Sample	Peak_Chrom	Peak_Start	Peak_End	Peak_Summit	Peak_Strand	Peak_Class	Height	Summit_Reads	Total_Reads	RPM	Entropy	TE_Chrom	TE_Start	TE_End	TE_Name	TE_Strand	Assembled_Iso_Chrom	Assembled_Iso_Start	Assembled_Iso_End	Assembled_Iso_Name	Assembled_Iso_Strand	Assembled_Iso_Exon_Start	Assembled_Iso_Exon_End	Assignment_Fraction
adrenal_gland_female_adult_51_years	chr9	128921939	128921958	128921957	+	High_confidence	4	4	11	0.635188	2.721928	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921989	128942038	STRG.20290.1	+	128921989,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368,128940598,128941444,128941667	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940497,128940715,128941571,128942038	0.909091
adrenal_gland_female_adult_51_years	chr15	78456028	78456092	78456028	+	RAMPAGE_only	42	52	194	11.202401	6.361088	chr15	78455788	78456214	LTR|ERVL-MaLR|MLT1F	-	chr15	78465298	78470948	IREB2|ENST00000559427.1	+	78465298,78466270,78470531,78470719	78465388,78466489,78470601,78470948	0.500000
adrenal_gland_female_adult_51_years	chr2	6918647	6918680	6918679	-	High_confidence	13	13	34	1.963307	4.771143	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6912275	6918682	RNF144A-AS1|NR_033997.1	-	6912275,6914192,6915822,6916849,6918401	6913664,6914350,6915967,6917224,6918682	0.794118
adrenal_gland_female_adult_51_years	chr13	27445106	27445108	27445107	-	RAMPAGE_only	10	17	18	1.039398	4.087463	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.944444
adrenal_gland_female_adult_51_years	chr13	113187444	113187485	113187471	-	High_confidence	9	9	40	2.309773	4.409130	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.925000
adrenal_gland_female_adult_51_years	chr6	79631273	79631329	79631328	+	High_confidence	24	27	97	5.601201	5.631733	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
adrenal_gland_female_adult_51_years	chr4_GL000008v2_random	170347	170350	170347	-	RAMPAGE_only	5	5	12	0.692932	2.688722	chr4_GL000008v2_random	170280	170685	LTR|ERV1|MER61C	+	chr4_GL000008v2_random	161986	178171	ANKRD20A12P|NR_046228.1	-	161986,163784,164602,175824,177526	162439,163998,164884,175974,178171	1.000000
adrenal_gland_female_adult_51_years	chr1	179302439	179302487	179302486	+	RAMPAGE_only	25	27	89	5.139246	5.548438	chr1	179302291	179302649	LTR|ERVL-MaLR|THE1D	+	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.988764
adrenal_gland_female_adult_51_years	chr8	119875414	119875430	119875414	+	RAMPAGE_only	4	11	20	1.154887	3.642150	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.850000
adrenal_gland_female_adult_51_years	chr5	40982338	40982538	40982412	+	RAMPAGE_only	32	42	443	25.580741	5.491202	chr5	40982142	40982442	SINE|Alu|AluSx1	-	chr5	40909496	40982939	C7|NM_000587.2	+	40909496,40928579,40931063,40934324,40936337,40937551,40945197,40947601,40949903,40955386,40958032,40959448,40962084,40964740,40972402,40976749,40979724,40981391	40909616,40928635,40931139,40934466,40936485,40937690,40945368,40947845,40950014,40955553,40958261,40959620,40962172,40964873,40972594,40976840,40979909,40982939	0.984199
adrenal_gland_female_adult_51_years	chr1	179302548	179302549	179302548	+	RAMPAGE_only	8	8	10	0.577443	2.725481	chr1	179302291	179302649	LTR|ERVL-MaLR|THE1D	+	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.900000
adrenal_gland_female_adult_51_years	chr5	41425969	41425970	41425969	+	High_confidence	7	7	10	0.577443	2.921928	chr5	41425316	41427700	LINE|L1|L1MC1	-	chr5	41426030	41428562	STRG.11107.1	+	41426030,41428404	41426151,41428562	0.800000
adrenal_gland_female_adult_51_years	chr1	150457371	150457374	150457371	+	RAMPAGE_only	4	5	9	0.519699	2.725481	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150364710	150473556	RPRD2|ENST00000369068.4	+	150364710,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150364919,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	1.000000
adrenal_gland_female_adult_51_years	chr8	17803607	17803615	17803607	+	RAMPAGE_only	16	17	32	1.847819	3.732445	chr8	17803546	17803836	SINE|Alu|AluSx1	+	chr8	17801337	17820625	STRG.17385.3	+	17801337,17808941,17820357	17801742,17809687,17820625	0.718750
adrenal_gland_female_adult_51_years	chr17	47053192	47053238	47053192	-	High_confidence	5	8	20	1.154887	3.511085	chr17	47053156	47053444	SINE|Alu|AluSz	+	chr17	47047364	47053963	STRG.32438.8	-	47047364,47048620	47048350,47053963	0.950000
adrenal_gland_female_adult_51_years	chr7	129395214	129395245	129395214	+	RAMPAGE_only	6	6	15	0.866165	3.323231	chr7	129395069	129395595	LINE|L1|L1MCc	-	chr7	129400299	129405508	AHCYL2|ENST00000492628.1	+	129400299,129403378,129405096	129400384,129403485,129405508	0.800000
adrenal_gland_female_adult_51_years	chr2	113710017	113710114	113710017	-	High_confidence	5	5	32	1.847819	4.449699	chr2	113709808	113710102	SINE|Alu|AluJo	-	chr2	113707074	113710157	STRG.5193.12	-	113707074	113710157	1.000000
adrenal_gland_female_adult_51_years	chr19	48868595	48868631	48868595	-	High_confidence	164	171	715	41.287200	7.400888	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.988811
adrenal_gland_female_adult_51_years	chr12	10363706	10363707	10363706	+	High_confidence	8	8	12	0.692932	3.022055	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	1.000000
adrenal_gland_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	38	38	38	2.194285	3.011251	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
adrenal_gland_female_adult_51_years	chr16	81181322	81181362	81181361	-	High_confidence	2	2	8	0.461955	2.521641	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181362	PKD1L2|NM_001278423.1	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181362	0.875000
adrenal_gland_female_adult_51_years	chr17	59892713	59892717	59892716	-	High_confidence	14	16	26	1.501353	3.970176	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.884615
adrenal_gland_female_adult_51_years	chr12	104030726	104030727	104030726	+	High_confidence	42	42	58	3.349171	5.290095	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.913793
adrenal_gland_female_adult_51_years	chr1	51570692	51570696	51570692	-	RAMPAGE_only	13	13	31	1.790074	4.413716	chr1	51570665	51570811	SINE|MIR|MIRc	+	chr1	51565529	51583727	CALR4P|ENST00000641477.1	-	51565529,51567173,51567751,51569547,51573953,51582823,51583449	51566541,51567332,51567843,51569750,51574055,51582920,51583727	0.838710
adrenal_gland_female_adult_51_years	chr7	40742581	40742612	40742599	+	High_confidence	479	507	1796	103.708826	6.947838	chr7	40742340	40742651	DNA|hAT-Charlie|MER1B	-	chr7	40742592	40860631	STRG.15395.4	+	40742592,40749433,40860315	40742692,40749497,40860631	0.864143
adrenal_gland_female_adult_51_years	chr3	33864124	33864125	33864124	+	RAMPAGE_only	5	6	7	0.404210	2.807355	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	1.000000
adrenal_gland_female_adult_51_years	chr12	55990087	55990088	55990087	+	High_confidence	5	5	8	0.461955	2.521641	chr12	55990127	55990424	SINE|Alu|AluSc	+	chr12	55989955	55994648	STRG.25511.3	+	55989955,55990681,55991359,55992096	55990098,55990804,55991453,55994648	0.875000
adrenal_gland_female_adult_51_years	chr1	9239792	9239846	9239843	+	High_confidence	11	11	52	3.002705	4.951741	chr1	9239801	9239853	LINE|Penelope|Penelope1_Vert	+	chr1	9239843	9271337	H6PD|NM_001282587.1	+	9239843,9244924,9246965,9262058,9263508	9240018,9245561,9247083,9262328,9271337	0.826923
adrenal_gland_female_adult_51_years	chr9	20658568	20658608	20658568	+	High_confidence	5	5	20	1.154887	3.826875	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658334	20765075	STRG.19003.3	+	20658334,20715321,20717793,20720379,20740235,20758089,20764868	20658826,20715410,20717868,20720534,20740340,20758191,20765075	0.650000
adrenal_gland_female_adult_51_years	chr1	226939239	226939271	226939269	+	High_confidence	5	11	30	1.732330	4.444188	chr1	226939237	226939309	DNA|hAT-Charlie|Charlie18a	-	chr1	226940236	226987545	ADCK3|NM_020247.4	+	226940236,226961376,226964999,226965670,226977448,226982026,226982677,226982893,226983551,226983760,226984093,226984547,226984875,226985253,226986452	226940399,226961562,226965410,226965737,226977523,226982149,226982763,226983034,226983633,226983854,226984235,226984655,226984941,226985340,226987545	0.566667
adrenal_gland_female_adult_51_years	chr11	72758532	72758611	72758553	-	High_confidence	7	11	59	3.406916	4.114498	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72759309	STARD10|ENST00000537351.5	-	72754728,72755121,72755700,72757766,72758529,72759233	72754782,72755142,72755753,72757884,72758633,72759309	0.627119
adrenal_gland_female_adult_51_years	chr17	43508342	43508343	43508342	+	RAMPAGE_only	10	10	10	0.577443	3.121928	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	1.000000
adrenal_gland_female_adult_51_years	chr17	4143196	4143215	4143199	+	High_confidence	391	405	836	48.274264	6.149263	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.983254
adrenal_gland_female_adult_51_years	chr11	119046593	119046604	119046603	-	RAMPAGE_only	5	6	10	0.577443	2.503258	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119044307	119048825	STRG.24346.5	-	119044307,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713	119045654,119045834,119046467,119046802,119047818,119048080,119048370,119048563,119048825	0.900000
adrenal_gland_female_adult_51_years	chr9	97563767	97563828	97563794	+	RAMPAGE_only	3	3	16	0.923909	3.452820	chr9	97563706	97563887	SINE|MIR|MIRc	-	chr9	97555434	97601254	TMOD1|ENST00000375175.1	+	97555434,97562731,97564037,97565847,97568893,97591290,97599633	97555711,97562821,97564168,97565955,97569037,97591435,97601254	0.937500
adrenal_gland_female_adult_51_years	chr5	151182125	151182143	151182125	-	RAMPAGE_only	3	3	17	0.981654	3.292770	chr5	151182086	151182249	SINE|MIR|MIRc	+	chr5	151181234	151185215	CCDC69|ENST00000519448.1	-	151181234,151184343	151183614,151185215	0.941176
adrenal_gland_female_adult_51_years	chr7	100808587	100808594	100808593	-	RAMPAGE_only	3	5	8	0.461955	2.500000	chr7	100808534	100808723	SINE|tRNA-RTE|MamSINE1	-	chr7	100805972	100807579	EPHB4|ENST00000492403.1	-	100805972,100807364	100806569,100807579	0.625000
adrenal_gland_female_adult_51_years	chr21	29077486	29077524	29077486	+	High_confidence	16	17	42	2.425262	4.460903	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.738095
adrenal_gland_female_adult_51_years	chrX	40263399	40263421	40263399	+	High_confidence	2	2	8	0.461955	2.521641	chrX	40263153	40263681	LTR|ERVL-MaLR|MLT1N2	-	chrX	40262916	40287721	LOC101927476|NR_110386.1	+	40262916,40283440,40285528	40263552,40283612,40287721	0.625000
adrenal_gland_female_adult_51_years	chr1	7913248	7913268	7913248	-	RAMPAGE_only	13	13	36	2.078796	3.755574	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.750000
adrenal_gland_female_adult_51_years	chr11	67999524	67999548	67999524	-	High_confidence	4	4	8	0.461955	2.521641	chr11	67999398	67999517	SINE|MIR|MIR3	-	chr11	67991103	67999194	UNC93B1|ENST00000610659.4	-	67991103,67996771,67997674,67998358,67999172	67991362,67996784,67997799,67998452,67999194	0.625000
adrenal_gland_female_adult_51_years	chrX	150777449	150777473	150777449	-	RAMPAGE_only	5	5	19	1.097142	3.115834	chrX	150776742	150777409	LTR|ERV1|MER4A	-	chrX	150768976	150814864	CD99L2|ENST00000634795.1	-	150768976,150770303,150771804,150776173,150777443,150793690,150795205,150795417,150814861	150769101,150770369,150771822,150776293,150777482,150793756,150795289,150795486,150814864	0.894737
adrenal_gland_female_adult_51_years	chr7	135981004	135981019	135981004	+	RAMPAGE_only	2	2	8	0.461955	2.750000	chr7	135980608	135981257	LTR|ERV1|MER51A	-	chr7	136092924	136437163	AC078845.1|ENST00000445293.6	+	136092924,136117070,136177251,136242149,136328981,136405269,136437051	136093036,136117188,136177413,136242371,136329097,136405316,136437163	0.625000
adrenal_gland_female_adult_51_years	chr12	79455504	79455560	79455536	-	High_confidence	3	3	15	0.866165	3.467720	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.933333
adrenal_gland_female_adult_51_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	30	30	30	1.732330	3.602910	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.900000
adrenal_gland_female_adult_51_years	chr12	643625	643636	643635	-	High_confidence	8	9	16	0.923909	3.456565	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.625000
adrenal_gland_female_adult_51_years	chr22	24011756	24011757	24011756	+	High_confidence	8	8	9	0.519699	2.750000	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.888889
adrenal_gland_female_adult_51_years	chr4	21544451	21544485	21544451	-	High_confidence	15	16	53	3.060450	4.370340	chr4	21544311	21544682	LTR|ERVL-MaLR|MLT1E2	-	chr4	21544063	21544352	STRG.9469.1	-	21544063	21544352	0.754717
adrenal_gland_female_adult_51_years	chr8	143558019	143558020	143558019	+	High_confidence	13	13	13	0.750676	3.392747	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	1.000000
adrenal_gland_female_adult_51_years	chr14	88831392	88831393	88831392	+	RAMPAGE_only	9	9	9	0.519699	2.947703	chr14	88831031	88831570	LTR|ERV1|MER66C	+	chr14	88824738	88877956	TTC8|ENST00000554686.5	+	88824738,88839451,88840864,88841036,88843805,88852970,88857189,88861221,88870058,88871548,88872329,88877293	88824821,88839572,88840928,88841196,88843850,88853056,88857277,88861332,88870198,88871723,88872452,88877956	0.777778
adrenal_gland_female_adult_51_years	chr2	154678681	154678717	154678716	-	RAMPAGE_only	4	4	18	1.039398	3.219528	chr2	154678542	154678955	LTR|ERVL|MLT2B4	-	chr2	154676095	154676304	STRG.5493.1	-	154676095	154676304	0.666667
adrenal_gland_female_adult_51_years	chr6	35672673	35672674	35672673	-	RAMPAGE_only	9	12	12	0.692932	3.251629	chr6	35672643	35672949	SINE|Alu|AluY	+	chr6	35573584	35688915	FKBP5|ENST00000539068.5	-	35573584,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35688731	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35642843,35688915	0.750000
adrenal_gland_female_adult_51_years	chr9	127531647	127531648	127531647	-	RAMPAGE_only	8	8	11	0.635188	3.277613	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	1.000000
adrenal_gland_female_adult_51_years	chr3	58377952	58377953	58377952	-	RAMPAGE_only	13	13	13	0.750676	2.968919	chr3	58377660	58378426	LINE|L1|HAL1	+	chr3	58192626	58214697	DNASE1L3|ENST00000483681.5	-	58192626,58197820,58200996,58204768,58205470,58208217,58210765,58214107,58214301	58193439,58197978,58201109,58204881,58205560,58208306,58211003,58214196,58214697	1.000000
adrenal_gland_female_adult_51_years	chr22	40930505	40930527	40930505	+	RAMPAGE_only	5	5	16	0.923909	3.030639	chr22	40930437	40930565	LINE|L1|L1MA5A	-	chr22	40857097	40932815	XPNPEP3|ENST00000357137.8	+	40857097,40868998,40881769,40886312,40907586,40909121,40914238,40922332,40924361,40926268	40857245,40869115,40882177,40886515,40907649,40909235,40914324,40922513,40924482,40932815	1.000000
adrenal_gland_female_adult_51_years	chr18	7946878	7946898	7946878	+	High_confidence	283	285	660	38.111261	6.431706	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946883	8379313	STRG.33296.2	+	7946883,7949180,7955120,8069685,8143646,8244057,8247844,8253226,8296367,8314780,8319177,8343422,8370889,8376045,8376461,8378264,8379166	7946977,7949355,7955414,8069994,8143779,8244209,8247919,8253414,8296455,8314857,8319214,8343520,8371006,8376200,8376597,8378414,8379313	0.980303
adrenal_gland_female_adult_51_years	chr11	65430580	65430815	65430775	+	RAMPAGE_only	384	386	857	49.486895	5.438812	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.997666
adrenal_gland_female_adult_51_years	chr9	104763743	104763756	104763755	+	High_confidence	4	5	11	0.635188	3.121928	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	0.909091
adrenal_gland_female_adult_51_years	chr14	29666082	29666102	29666082	-	High_confidence	7	8	14	0.808421	3.521641	chr14	29665934	29666040	LINE|L1|L1PB3	-	chr14	29638295	29666158	PRKD1|ENST00000468370.5	-	29638295,29638693,29656475,29663698,29666076	29638566,29638904,29656499,29663859,29666158	0.785714
adrenal_gland_female_adult_51_years	chr6	48111154	48111194	48111154	-	RAMPAGE_only	4	4	21	1.212631	3.826875	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47899608	48068689	PTCHD4|NM_207499.2	-	47899608,48008633,48068229	47901935,48009114,48068689	0.523810
adrenal_gland_female_adult_51_years	chr3	179681645	179681666	179681665	+	RAMPAGE_only	3	4	8	0.461955	3.000000	chr3	179681222	179681750	LTR|ERV1|LTR6A	-	chr3	179690237	179707137	STRG.8894.4	+	179690237,179701007,179706933	179690301,179701179,179707137	0.625000
adrenal_gland_female_adult_51_years	chrX	16712889	16712959	16712958	-	High_confidence	6	6	42	2.425262	4.812210	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16587998	16712979	CTPS2|NM_019857.4	-	16587998,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712979	0.976190
adrenal_gland_female_adult_51_years	chr7	95506771	95506772	95506771	+	RAMPAGE_only	9	9	11	0.635188	2.921928	chr7	95506197	95507338	LINE|L1|HAL1	-	chr7	95492260	95540232	STRG.16155.2	+	95492260,95495757,95527812,95536436,95537570	95492410,95496057,95528303,95536550,95540232	0.636364
adrenal_gland_female_adult_51_years	chr1	49257817	49257818	49257817	-	RAMPAGE_only	4	4	7	0.404210	2.521641	chr1	49257178	49257818	LINE|L1|L1PA3	-	chr1	48817506	50023900	AGBL4|ENST00000371836.1	-	48817506,48867190,49045583,49245769,49697312,49851395,50023762	48818222,48867230,49045800,49245864,49697437,49851518,50023900	0.857143
adrenal_gland_female_adult_51_years	chr10	84142679	84142726	84142725	+	RAMPAGE_only	3	3	15	0.866165	3.189898	chr10	84142771	84142861	DNA|hAT-Charlie|Charlie4z	+	chr10	84139439	84153245	GHITM|ENST00000372134.5	+	84139439,84141461,84142654,84143994,84144874,84148729,84150054,84150708,84152263	84139593,84141629,84142754,84144106,84145016,84148838,84150243,84150880,84153245	1.000000
adrenal_gland_female_adult_51_years	chr12	53464784	53464834	53464815	+	RAMPAGE_only	19	19	49	2.829472	4.818392	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479614	STRG.25451.18	+	53462513,53464759,53465931,53467220,53468776,53471637,53479405	53462567,53464852,53465973,53467293,53468832,53471807,53479614	0.979592
adrenal_gland_female_adult_51_years	chr7	134447614	134447641	134447614	-	RAMPAGE_only	6	6	16	0.923909	3.506891	chr7	134447401	134447602	SINE|MIR|MIR	-	chr7	134442385	134459102	AKR1B1|ENST00000434222.5	-	134442385,134445237,134447297,134447460,134448386,134448996,134449719,134450785,134451585,134458996	134442770,134445320,134447381,134448061,134448493,134449119,134449797,134450902,134451753,134459102	0.750000
adrenal_gland_female_adult_51_years	chr15	80059918	80059933	80059918	+	High_confidence	199	218	464	26.793372	5.080624	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.982759
adrenal_gland_female_adult_51_years	chr15	74354435	74354436	74354435	+	High_confidence	16	19	19	1.097142	3.826875	chr15	74354143	74354537	LTR|ERV1|LTR7	+	chr15	74354455	74364620	PPIAP46|ENST00000562009.1	+	74354455,74361513	74354685,74364620	0.789474
adrenal_gland_female_adult_51_years	chr1	147173225	147173261	147173225	+	High_confidence	16	16	85	4.908269	5.469693	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.858824
adrenal_gland_female_adult_51_years	chr6	26474333	26474343	26474333	+	RAMPAGE_only	3	3	11	0.635188	2.913977	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.727273
adrenal_gland_female_adult_51_years	chr2	27773572	27773604	27773572	+	RAMPAGE_only	14	16	49	2.829472	4.336563	chr2	27773515	27773671	LINE|L2|L2c	+	chr2	27772189	27779697	MRPL33|ENST00000476552.1	+	27772189,27772673,27774423,27779432	27772385,27772692,27774530,27779697	0.938776
adrenal_gland_female_adult_51_years	chr19	45524130	45524140	45524130	+	RAMPAGE_only	2	2	7	0.404210	2.521641	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45507509	45526500	STRG.35204.2	+	45507509,45517662,45522534,45522717,45523643,45523840,45524096,45524569,45525945,45526139	45507776,45517750,45522581,45522818,45523695,45523877,45524142,45524660,45526003,45526500	0.857143
adrenal_gland_female_adult_51_years	chr2	27893866	27893943	27893942	+	High_confidence	31	31	139	8.026463	4.933895	chr2	27893713	27894016	SINE|Alu|AluSc	+	chr2	27894544	28233315	BABAM2|ENST00000379629.7	+	27894544,27929831,27987992,28025225,28045724,28129270,28233142	27894684,27929908,27988087,28025420,28045799,28129380,28233315	0.956835
adrenal_gland_female_adult_51_years	chr3	33129942	33130063	33130041	+	RAMPAGE_only	14	15	72	4.157592	5.031072	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	0.986111
adrenal_gland_female_adult_51_years	chr4	123894758	123894759	123894758	+	RAMPAGE_only	10	10	10	0.577443	3.321928	chr4	123894654	123894827	SINE|Alu|AluYc	-	chr4	123925006	123930642	STRG.10258.2	+	123925006,123925183,123930247	123925025,123925337,123930642	0.700000
adrenal_gland_female_adult_51_years	chr2	27904549	27904550	27904549	+	RAMPAGE_only	12	12	16	0.923909	3.189898	chr2	27904412	27904729	LINE|L1|HAL1	+	chr2	27910940	28338901	STRG.4047.8	+	27910940,27929831,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28327273,28338449	27911143,27929908,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28327447,28338901	0.937500
adrenal_gland_female_adult_51_years	chr2	3536827	3536882	3536845	-	High_confidence	9	9	78	4.504058	5.461496	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.871795
adrenal_gland_female_adult_51_years	chr10	72355126	72355146	72355145	-	High_confidence	10	10	19	1.097142	3.721612	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
adrenal_gland_female_adult_51_years	chr14	50159437	50159441	50159440	-	RAMPAGE_only	12	13	19	1.097142	3.932138	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	1.000000
adrenal_gland_female_adult_51_years	chr5	139364665	139364720	139364718	+	RAMPAGE_only	7	10	26	1.501353	3.763342	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.500000
adrenal_gland_female_adult_51_years	chr2	11201309	11201353	11201309	-	RAMPAGE_only	2	2	16	0.923909	3.773557	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.937500
adrenal_gland_female_adult_51_years	chr19	11356802	11356803	11356802	+	High_confidence	9	10	10	0.577443	2.846439	chr19	11356842	11356927	SINE|MIR|MIRc	+	chr19	11357695	11359894	PLPPR2|ENST00000588196.1	+	11357695,11359531	11357739,11359894	0.500000
adrenal_gland_female_adult_51_years	chr15	52569721	52569722	52569721	-	High_confidence	8	8	8	0.461955	2.500000	chr15	52569688	52569809	LINE|L2|L2	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	0.750000
adrenal_gland_female_adult_51_years	chr2	227534916	227534931	227534916	+	RAMPAGE_only	2	2	12	0.692932	2.913977	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.916667
adrenal_gland_female_adult_51_years	chr2	27978248	27978252	27978251	+	High_confidence	2037	2220	3734	215.617348	6.854431	chr2	27978041	27978454	LTR|ERVL-MaLR|MSTB	+	chr2	27978205	28338901	STRG.4047.7	+	27978205,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28310081,28327227,28338449	27978374,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28310153,28327447,28338901	0.956347
adrenal_gland_female_adult_51_years	chr9	131026294	131026319	131026294	+	RAMPAGE_only	3	3	9	0.519699	2.500000	chr9	131026266	131026354	DNA|TcMar-Tigger|Tigger19b	+	chr9	131009173	131092109	LAMC3|ENST00000480883.1	+	131009173,131026284,131032044,131036165,131038863,131039130,131041636,131045523,131091673	131009587,131026589,131032175,131036332,131039052,131039248,131041735,131045567,131092109	0.888889
adrenal_gland_female_adult_51_years	chr11	77571431	77571452	77571431	+	High_confidence	4	4	9	0.519699	2.725481	chr11	77571455	77571917	LTR|ERV1|HERV3-int	+	chr11	77571371	77574414	STRG.23735.1	+	77571371,77574210	77571685,77574414	0.777778
adrenal_gland_female_adult_51_years	chr1	89272836	89272883	89272859	-	High_confidence	9	10	62	3.580149	4.478391	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	1.000000
adrenal_gland_female_adult_51_years	chr20	3873764	3873812	3873811	+	RAMPAGE_only	9	15	33	1.905563	4.413910	chr20	3873828	3874352	LINE|L1|L1ME3A	+	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.939394
adrenal_gland_female_adult_51_years	chr19	50379815	50379860	50379859	+	RAMPAGE_only	3	3	13	0.750676	2.688722	chr19	50379903	50379991	SINE|MIR|MIRc	+	chr19	50377244	50382944	NR1H2|ENST00000593926.5	+	50377244,50377586,50377732,50378148,50378521,50379001,50379779,50381965,50382455	50377328,50377648,50377870,50378439,50378796,50379181,50379879,50382174,50382944	0.923077
adrenal_gland_female_adult_51_years	chr5	149431002	149431033	149431002	-	RAMPAGE_only	5	5	27	1.559097	3.824539	chr5	149430947	149431025	SINE|MIR|MIRc	-	chr5	149374266	149404202	IL17B|NM_001317987.1	-	149374266,149376735,149404107	149374600,149377025,149404202	0.925926
adrenal_gland_female_adult_51_years	chr3	188708151	188708202	188708163	+	RAMPAGE_only	10	10	39	2.252029	4.580023	chr3	188708061	188708180	SINE|MIR|MIR3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.974359
adrenal_gland_female_adult_51_years	chr18	28159296	28159297	28159296	-	High_confidence	17	19	21	1.212631	3.826875	chr18	28159142	28159517	LTR|ERVL|LTR79	+	chr18	28011917	28159297	CDH2|ENST00000413878.1	-	28011917,28013682,28147672,28159148	28011992,28013909,28147784,28159297	0.761905
adrenal_gland_female_adult_51_years	chr5	150118757	150118789	150118788	-	RAMPAGE_only	5	5	10	0.577443	3.121928	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	1.000000
adrenal_gland_female_adult_51_years	chr1	166850225	166850294	166850293	+	RAMPAGE_only	3	3	10	0.577443	3.121928	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
adrenal_gland_female_adult_51_years	chr4	158093706	158093707	158093706	-	High_confidence	7	7	11	0.635188	2.732159	chr4	158093594	158093891	SINE|Alu|AluSp	-	chr4	157987703	158093847	STRG.10531.1	-	157987703,158034042,158093530	157987775,158034159,158093847	0.636364
adrenal_gland_female_adult_51_years	chr16	14245647	14245648	14245647	+	RAMPAGE_only	18	18	21	1.212631	3.195296	chr16	14245645	14245696	SINE|tRNA|LFSINE_Vert	+	chr16	14079287	14266772	MRTFB|ENST00000318282.9	+	14079287,14140543,14210242,14212353,14213544,14217125,14218819,14234145,14240236,14245527,14246472,14248925,14251861,14252364,14258100,14260908	14079354,14140760,14210308,14212409,14213620,14217287,14218998,14234283,14240484,14245660,14247357,14249081,14252023,14252502,14258161,14266772	0.904762
adrenal_gland_female_adult_51_years	chr14	22909550	22909577	22909550	-	RAMPAGE_only	2	2	8	0.461955	3.000000	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22904884	22919110	STRG.27350.6	-	22904884,22905093,22905335,22905605,22906194,22909482,22911327,22918998	22905012,22905221,22905453,22905659,22906368,22909595,22911403,22919110	0.875000
adrenal_gland_female_adult_51_years	chr16	20674497	20674498	20674497	+	High_confidence	106	108	117	6.756087	4.104249	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.914530
adrenal_gland_female_adult_51_years	chr12	42098261	42098284	42098283	-	RAMPAGE_only	7	7	20	1.154887	3.384184	chr12	42098282	42098429	SINE|MIR|MIR	+	chr12	42087144	42144712	GXYLT1|ENST00000280876.6	-	42087144,42097441,42097909,42105817,42109565,42118999,42144425	42087947,42097614,42098033,42106069,42109691,42119171,42144712	0.900000
adrenal_gland_female_adult_51_years	chr5	157100535	157100536	157100535	-	RAMPAGE_only	6	6	9	0.519699	3.000000	chr5	157100457	157100544	LINE|L2|L2a	-	chr5	157087087	157109122	HAVCR2|ENST00000522593.5	-	157087087,157088940,157095305,157098857,157106626,157108925	157087294,157088977,157095459,157098901,157106962,157109122	0.777778
adrenal_gland_female_adult_51_years	chr11	123060137	123060257	123060137	-	High_confidence	47	54	484	27.948258	5.453076	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.685950
adrenal_gland_female_adult_51_years	chr3	29280832	29280896	29280853	-	High_confidence	4	4	27	1.559097	3.852498	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.629630
adrenal_gland_female_adult_51_years	chr10	65570519	65570529	65570519	+	High_confidence	5	6	18	1.039398	3.572431	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.666667
adrenal_gland_female_adult_51_years	chr11	17282802	17282824	17282813	+	RAMPAGE_only	3	4	9	0.519699	2.750000	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.888889
adrenal_gland_female_adult_51_years	chr1	166850123	166850124	166850123	+	RAMPAGE_only	12	13	18	1.039398	3.572431	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
adrenal_gland_female_adult_51_years	chr1	156252929	156252960	156252929	-	RAMPAGE_only	2	2	8	0.461955	3.000000	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156250032	156251380	SMG5|ENST00000476954.1	-	156250032,156250857	156250670,156251380	0.750000
adrenal_gland_female_adult_51_years	chr16	84139254	84139303	84139269	-	RAMPAGE_only	4	4	17	0.981654	3.572469	chr16	84139153	84139637	LTR|ERVL-MaLR|MLT1D	+	chr16	84124122	84145169	HSDL1|ENST00000434463.7	-	84124122,84129547,84129985,84130336,84131101,84135543,84145079	84124728,84129775,84130171,84130431,84131327,84135605,84145169	0.823529
adrenal_gland_female_adult_51_years	chr13	106561950	106561951	106561950	-	High_confidence	7	7	7	0.404210	2.807355	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	1.000000
adrenal_gland_female_adult_51_years	chr14	102235458	102235481	102235480	-	High_confidence	7	7	17	0.981654	3.616875	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	1.000000
adrenal_gland_female_adult_51_years	chr6	43025285	43025319	43025318	+	High_confidence	8	10	19	1.097142	3.431624	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.842105
adrenal_gland_female_adult_51_years	chr7	6590246	6590279	6590269	+	High_confidence	9	9	48	2.771728	4.803509	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.645833
adrenal_gland_female_adult_51_years	chr5	41426015	41426052	41426015	+	High_confidence	95	97	493	28.467957	4.019314	chr5	41425316	41427700	LINE|L1|L1MC1	-	chr5	41426030	41428562	STRG.11107.1	+	41426030,41428404	41426151,41428562	0.985801
adrenal_gland_female_adult_51_years	chr11	128896441	128896486	128896441	+	RAMPAGE_only	14	15	45	2.598495	3.652500	chr11	128896213	128896607	LINE|L1|L1MD1	-	chr11	128891468	128916853	KCNJ5|ENST00000338350.4	+	128891468,128909851,128911263,128916408	128891721,128909940,128912210,128916853	1.000000
adrenal_gland_female_adult_51_years	chr19	45099722	45099746	45099722	+	High_confidence	8	8	18	1.039398	3.947703	chr19	45099644	45099739	LINE|L2|L2c	+	chr19	45100063	45141386	PPP1R37|ENST00000544897.5	+	45100063,45138513,45140235,45140505,45141321	45100280,45138611,45140281,45140606,45141386	0.611111
adrenal_gland_female_adult_51_years	chr20	37298760	37298761	37298760	+	RAMPAGE_only	13	15	18	1.039398	3.461320	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
adrenal_gland_female_adult_51_years	chr11	110406440	110406740	110406565	+	RAMPAGE_only	19	19	189	10.913679	6.252526	chr11	110406480	110407144	LTR|ERV1|LTR12_	+	chr11	110355198	110407676	STRG.24167.1	+	110355198,110366360,110388955,110406243	110355518,110366534,110389077,110407676	1.000000
adrenal_gland_female_adult_51_years	chr4	39319808	39319847	39319808	-	RAMPAGE_only	23	28	65	3.753382	4.519608	chr4	39319668	39319780	DNA|TcMar-Tigger|MER44B	-	chr4	39312763	39318070	RFC1|ENST00000509084.1	-	39312763,39316914,39317863	39312931,39317022,39318070	0.538462
adrenal_gland_female_adult_51_years	chr1	77532106	77532107	77532106	+	High_confidence	24	25	31	1.790074	4.185230	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.935484
adrenal_gland_female_adult_51_years	chr16	29963060	29963109	29963060	+	High_confidence	7	7	24	1.385864	4.220176	chr16	29962944	29963068	SINE|MIR|MIRc	+	chr16	29963171	29973048	TMEM219|ENST00000570255.5	+	29963171,29963399,29968024,29971407,29972041,29972949	29963308,29963589,29968254,29971578,29972140,29973048	1.000000
adrenal_gland_female_adult_51_years	chrX	15404901	15404904	15404903	-	RAMPAGE_only	7	15	18	1.039398	3.292770	chrX	15404835	15405042	SINE|tRNA-RTE|MamSINE1	+	chrX	15384798	15407653	PIR|ENST00000492432.5	-	15384798,15390184,15397448,15407505	15385116,15390251,15397531,15407653	0.888889
adrenal_gland_female_adult_51_years	chr18	50400902	50400903	50400902	+	High_confidence	11	11	12	0.692932	2.913977	chr18	50400450	50401006	LTR|ERV1|LTR6A	+	chr18	50400866	50405443	STRG.33604.1	+	50400866,50405174	50401215,50405443	0.750000
adrenal_gland_female_adult_51_years	chr17	58535636	58535637	58535636	-	RAMPAGE_only	4	5	7	0.404210	2.521641	chr17	58535378	58535602	LINE|CR1|L3	-	chr17	58520249	58532084	SEPT4|NM_080416.3	-	58520249,58520742,58520997,58521253,58521544,58521735,58521966,58525077,58525694,58526219,58526681,58531960	58520485,58520842,58521160,58521350,58521646,58521853,58522101,58525201,58525781,58526313,58526978,58532084	1.000000
adrenal_gland_female_adult_51_years	chr1	153967486	153967512	153967486	+	High_confidence	10	13	49	2.829472	4.601684	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.653061
adrenal_gland_female_adult_51_years	chr6	43013379	43013393	43013392	-	High_confidence	11	11	20	1.154887	4.021928	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
adrenal_gland_female_adult_51_years	chr11	63626330	63626331	63626330	-	RAMPAGE_only	41	43	43	2.483006	3.806727	chr11	63626098	63626400	SINE|Alu|AluSx	+	chr11	63624086	63671612	ATL3|ENST00000398868.7	-	63624086,63631039,63633025,63635533,63636206,63643356,63644168,63646506,63651935,63652470,63658760,63659037,63671289	63629405,63631471,63633097,63635590,63636334,63643495,63644261,63646563,63651986,63652575,63658904,63659252,63671612	0.953488
adrenal_gland_female_adult_51_years	chr1	158999949	158999976	158999949	+	High_confidence	7	7	30	1.732330	3.669577	chr1	158999859	158999963	LTR|ERVL-MaLR|MSTB	+	chr1	158999967	159014929	IFI16|ENST00000566111.5	+	158999967,159010002,159014660	159000395,159010161,159014929	0.966667
adrenal_gland_female_adult_51_years	chr7	112452385	112452419	112452403	+	High_confidence	11	14	59	3.406916	4.963596	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112477203	IFRD1|NM_001197079.1	+	112452057,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112452511,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112477203	0.932203
adrenal_gland_female_adult_51_years	chr6	169725731	169725742	169725739	-	High_confidence	3	5	10	0.577443	2.521928	chr6	169725736	169726118	LTR|ERV1|MER65A	+	chr6	169725090	169725854	AL354892.2|ENST00000413088.1	-	169725090,169725420,169725826	169725316,169725569,169725854	0.600000
adrenal_gland_female_adult_51_years	chr5	180909576	180909577	180909576	+	High_confidence	4	4	7	0.404210	2.521641	chr5	180909597	180909731	SINE|Alu|FLAM_C	+	chr5	180909578	180948921	BTNL8|ENST00000513442.1	+	180909578,180911338,180947511,180948354	180909697,180911614,180947625,180948921	0.857143
adrenal_gland_female_adult_51_years	chr20	3795750	3795789	3795750	+	High_confidence	15	15	118	6.813832	5.835838	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
adrenal_gland_female_adult_51_years	chr12	79873262	79873267	79873262	-	High_confidence	6	6	11	0.635188	2.550341	chr12	79873243	79873519	DNA|hAT-Charlie|Charlie1a	+	chr12	79828370	79872872	PPP1R12A|ENST00000548318.1	-	79828370,79832331,79845301,79848787,79872807	79828464,79832491,79845420,79848931,79872872	0.909091
adrenal_gland_female_adult_51_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	12	12	12	0.692932	3.084963	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
adrenal_gland_female_adult_51_years	chr9	13386129	13386133	13386132	+	RAMPAGE_only	25	26	43	2.483006	4.403989	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.837209
adrenal_gland_female_adult_51_years	chr9	108885821	108885872	108885839	-	High_confidence	907	1139	4903	283.120476	7.703342	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108867771	108885884	STRG.19919.2	-	108867771,108874894,108877994,108878622,108879445,108880051,108881704,108882124,108885388	108869182,108874970,108878149,108878750,108879557,108880165,108881765,108882187,108885884	0.977157
adrenal_gland_female_adult_51_years	chr1	89135035	89135036	89135035	-	RAMPAGE_only	6	6	8	0.461955	3.000000	chr1	89133498	89139088	LINE|L1|L1PA15	+	chr1	89131750	89176040	GBP7|ENST00000294671.2	-	89131750,89133257,89141545,89147566,89149291,89150329,89152267,89152667,89164730,89171745,89175920	89132403,89133451,89141648,89147779,89149572,89150575,89152464,89152777,89164858,89171954,89176040	1.000000
adrenal_gland_female_adult_51_years	chr8	143281669	143281687	143281686	-	High_confidence	18	19	61	3.522404	5.340740	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281690	MINCR|ENST00000518073.1	-	143280827,143281481	143280997,143281690	0.590164
adrenal_gland_female_adult_51_years	chr19	7635819	7635831	7635819	-	RAMPAGE_only	4	4	12	0.692932	3.095795	chr19	7635792	7635861	DNA|hAT-Blackjack|MER81	+	chr19	7631614	7633748	PCP2|ENST00000311069.5	-	7631614,7632392,7632715,7633406	7631808,7632517,7632830,7633748	0.916667
adrenal_gland_female_adult_51_years	chr1	1655410	1655411	1655410	-	RAMPAGE_only	58	64	76	4.388569	5.415450	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.605263
adrenal_gland_female_adult_51_years	chr14	57274832	57274861	57274860	+	RAMPAGE_only	4	7	12	0.692932	2.663533	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.833333
adrenal_gland_female_adult_51_years	chr9	121281850	121281892	121281850	+	RAMPAGE_only	9	10	39	2.252029	4.754378	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.846154
adrenal_gland_female_adult_51_years	chr8	97719119	97719183	97719182	+	RAMPAGE_only	15	15	31	1.790074	3.535675	chr8	97719213	97719522	SINE|Alu|AluSx1	+	chr8	97644545	97725243	MTDH|ENST00000519934.5	+	97644545,97661071,97686667,97687428,97689037,97690951,97706625,97713661,97719048,97722878,97724599	97644887,97661173,97686752,97687605,97689103,97691188,97706750,97713769,97719189,97723035,97725243	1.000000
adrenal_gland_female_adult_51_years	chr2	46903532	46903539	46903532	-	RAMPAGE_only	28	29	61	3.522404	4.914377	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.950820
adrenal_gland_female_adult_51_years	chr12	124833010	124833036	124833023	-	RAMPAGE_only	3	4	12	0.692932	2.550341	chr12	124832826	124833193	LTR|ERVL-MaLR|MLT1D	-	chr12	124785819	124817707	SCARB1|ENST00000544327.1	-	124785819,124787405,124795194,124800123,124807760,124810173,124811869,124814201,124814972,124817549	124786503,124787457,124795268,124800242,124807927,124810289,124811965,124814405,124815114,124817707	0.916667
adrenal_gland_female_adult_51_years	chr11	58578102	58578156	58578132	-	High_confidence	23	27	104	6.005411	5.494112	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.875000
adrenal_gland_female_adult_51_years	chr1	155058772	155058773	155058772	+	High_confidence	15	15	17	0.981654	3.734522	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	1.000000
adrenal_gland_female_adult_51_years	chr4	15688662	15688684	15688683	+	RAMPAGE_only	5	5	9	0.519699	2.503258	chr4	15686498	15689141	DNA|hAT-Charlie|Charlie9	+	chr4	15681728	15690447	FAM200B|NM_001145191.1	+	15681728,15686235	15681901,15690447	0.777778
adrenal_gland_female_adult_51_years	chr12	104280736	104280812	104280736	-	High_confidence	17	17	60	3.464660	5.362207	chr12	104280524	104280952	LTR|ERVL|MLT2D	+	chr12	104262313	104280722	AC089983.1|ENST00000549807.1	-	104262313,104280283	104262575,104280722	0.933333
adrenal_gland_female_adult_51_years	chr14	94581662	94581676	94581675	+	High_confidence	4	4	11	0.635188	3.121928	chr14	94581654	94581760	SINE|MIR|MIRb	+	chr14	94581614	94593115	SERPINA5|ENST00000554276.1	+	94581614,94587345,94590040,94590748,94592056	94581710,94587981,94590311,94590896,94593115	0.909091
adrenal_gland_female_adult_51_years	chr12	111792739	111792773	111792772	+	RAMPAGE_only	5	5	15	0.866165	3.456565	chr12	111792817	111793049	SINE|MIR|MIRc	+	chr12	111766947	111809630	ALDH2|ENST00000548536.1	+	111766947,111775604,111781917,111783157,111785266,111789822,111790433,111791305,111792060,111792597,111798077,111799905,111803858,111809542	111767096,111775720,111782022,111783298,111785346,111789934,111790562,111791419,111792163,111792782,111798242,111800063,111803973,111809630	0.600000
adrenal_gland_female_adult_51_years	chr12	93773375	93773438	93773408	+	RAMPAGE_only	9	12	58	3.349171	4.659261	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.913793
adrenal_gland_female_adult_51_years	chr11	78023571	78023586	78023571	-	High_confidence	3	4	8	0.461955	2.500000	chr11	78023502	78023666	SINE|Alu|AluJb	-	chr11	78015714	78023294	KCTD14|ENST00000353172.5	-	78015714,78023159	78017270,78023294	0.875000
adrenal_gland_female_adult_51_years	chr11	65429888	65430106	65430042	+	RAMPAGE_only	18	18	160	9.239094	5.668660	chr11	65430027	65430148	SINE|MIR|MIRb	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.987500
adrenal_gland_female_adult_51_years	chr12	10363651	10363664	10363651	+	High_confidence	3	4	13	0.750676	3.418296	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.538462
adrenal_gland_female_adult_51_years	chr2	54618407	54618412	54618411	+	RAMPAGE_only	9	9	15	0.866165	3.521641	chr2	54618332	54618503	LINE|L2|L2c	-	chr2	54558393	54662308	SPTBN1|NM_178313.2	+	54558393,54599091,54612160,54616206,54617607,54618077,54621399,54622299,54623478,54624803,54625931,54628096,54628932,54629891,54630854,54632565,54637712,54642982,54644322,54645228,54645927,54646193,54647130,54648985,54649614,54653608,54655069,54655913,54657849,54659153,54659935	54558887,54599243,54612334,54616298,54617688,54618193,54621512,54622487,54623596,54624962,54626234,54628250,54629803,54630029,54631611,54632768,54637803,54643129,54644586,54645453,54646017,54646475,54647261,54649190,54649989,54653853,54655208,54655998,54658046,54659266,54662308	0.933333
adrenal_gland_female_adult_51_years	chr19	1880087	1880088	1880087	-	High_confidence	12	12	15	0.866165	3.324863	chr19	1880079	1880146	DNA|hAT-Ac|OldhAT1	+	chr19	1877203	1880017	ABHD17A|ENST00000592757.1	-	1877203,1877507,1878663,1879920	1877425,1877687,1878904,1880017	0.733333
adrenal_gland_female_adult_51_years	chr7	143279927	143279948	143279947	+	High_confidence	3	5	8	0.461955	3.000000	chr7	143279918	143280020	SINE|MIR|MIRc	+	chr7	143279956	143287296	TMEM139|ENST00000409102.5	+	143279956,143285940,143286423	143280047,143286202,143287296	0.750000
adrenal_gland_female_adult_51_years	chr12	124355447	124355448	124355447	-	RAMPAGE_only	13	16	17	0.981654	3.500000	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124325385	124388824	STRG.26413.3	-	124325385,124326190,124327546,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124388684	124325583,124326370,124327633,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362294,124363799,124372610,124374463,124378384,124385887,124388824	0.941176
adrenal_gland_female_adult_51_years	chr16	11774341	11774342	11774341	-	High_confidence	9	9	11	0.635188	3.095795	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	0.727273
adrenal_gland_female_adult_51_years	chr10	59707194	59707207	59707194	-	RAMPAGE_only	9	9	31	1.790074	4.094740	chr10	59707053	59707198	SINE|Alu|AluJb	+	chr10	59650763	59709891	SLC16A9|NM_001323981.1	-	59650763,59653674,59664226,59672769,59684095,59707105,59709478	59652950,59654589,59664322,59672913,59684327,59707188,59709891	0.935484
adrenal_gland_female_adult_51_years	chr2	229232042	229232054	229232053	-	High_confidence	4	4	8	0.461955	2.750000	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.875000
adrenal_gland_female_adult_51_years	chr6	2990740	2990755	2990748	-	RAMPAGE_only	108	139	438	25.292019	4.664303	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.897260
adrenal_gland_female_adult_51_years	chr19	9700673	9700674	9700673	-	High_confidence	18	18	18	1.039398	3.392147	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.944444
adrenal_gland_female_adult_51_years	chr11	123061207	123061323	123061322	-	High_confidence	41	47	188	10.855935	5.795970	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.957447
adrenal_gland_female_adult_51_years	chr3	114380891	114380919	114380891	-	RAMPAGE_only	2	3	9	0.519699	2.503258	chr3	114380802	114381001	SINE|MIR|MIR3	+	chr3	114338652	114383641	ZBTB20|ENST00000474710.5	-	114338652,114350273,114380216,114380776,114383615	114339426,114351878,114380404,114380940,114383641	1.000000
adrenal_gland_female_adult_51_years	chr19	571752	571771	571770	-	High_confidence	8	8	17	0.981654	3.500000	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.823529
adrenal_gland_female_adult_51_years	chr18	36807869	36807870	36807869	-	High_confidence	21	21	27	1.559097	4.403856	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.666667
adrenal_gland_female_adult_51_years	chr6	2881285	2881286	2881285	-	High_confidence	11	11	11	0.635188	3.277613	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
adrenal_gland_female_adult_51_years	chr9	109806957	109806963	109806962	+	RAMPAGE_only	6	6	14	0.808421	3.664498	chr9	109806348	109807341	LINE|L2|L2a	-	chr9	109780455	110169909	PALM2-AKAP2|ENST00000302798.7	+	109780455,109867490,109880550,109923734,109925060,109931926,110015953,110136126,110156318,110168398	109780533,109867571,109880681,109923849,109925082,109932028,110016039,110138539,110156497,110169909	0.714286
adrenal_gland_female_adult_51_years	chr8	141730595	141730670	141730664	-	High_confidence	10	10	94	5.427968	5.482693	chr8	141730639	141730761	SINE|MIR|MIR3	+	chr8	141725470	141730247	STRG.18603.1	-	141725470,141730211	141727274,141730247	0.617021
adrenal_gland_female_adult_51_years	chr1	110897855	110897876	110897855	+	High_confidence	4	4	8	0.461955	2.750000	chr1	110897898	110898002	SINE|MIR|MIR	+	chr1	110897669	110899316	CD53|ENST00000464329.1	+	110897669,110899123	110897892,110899316	0.500000
adrenal_gland_female_adult_51_years	chr5	90993206	90993217	90993206	+	RAMPAGE_only	7	7	31	1.790074	4.228073	chr5	90993154	90993450	SINE|Alu|AluSx4	-	chr5	90965187	91164216	STRG.11656.1	+	90965187,90985343,91072446,91102218,91150029,91153220,91163781	90965531,90985522,91072604,91102340,91150221,91153398,91164216	0.935484
adrenal_gland_female_adult_51_years	chr5	154409561	154409591	154409569	+	RAMPAGE_only	3	3	16	0.923909	3.106891	chr5	154409601	154409687	LINE|L1|L1PREC2	+	chr5	154403776	154419033	GALNT10|ENST00000517958.1	+	154403776,154409540,154412888,154415782,154416813	154404216,154409762,154413005,154415932,154419033	0.875000
adrenal_gland_female_adult_51_years	chr9	129489063	129489126	129489125	+	High_confidence	14	16	40	2.309773	4.971928	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.850000
adrenal_gland_female_adult_51_years	chr12	56157322	56157459	56157351	+	High_confidence	13	13	141	8.141951	5.442406	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.872340
adrenal_gland_female_adult_51_years	chr17	63691838	63691840	63691838	+	RAMPAGE_only	5	7	10	0.577443	2.725481	chr17	63691879	63692027	SINE|MIR|MIRc	+	chr17	63622709	63693874	MAP3K3|ENST00000577395.5	+	63622709,63632680,63646033,63652556,63657793,63666939,63681765,63685516,63688526,63688788,63689543,63690263,63691101,63691732,63692241,63693548	63622763,63632802,63646074,63652656,63657907,63667060,63681899,63685578,63688594,63688881,63689735,63690412,63691233,63691862,63692419,63693874	0.600000
adrenal_gland_female_adult_51_years	chr19	7642282	7642317	7642316	+	High_confidence	2	3	8	0.461955	2.807355	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7647810	STRG.34030.2	+	7642245,7642428,7642765,7642982,7643164,7644613,7645196,7646248,7647161,7647724	7642333,7642536,7642823,7643048,7643245,7644752,7645306,7646344,7647511,7647810	0.875000
adrenal_gland_female_adult_51_years	chr19	40608591	40608592	40608591	+	RAMPAGE_only	8	8	8	0.461955	2.750000	chr19	40608638	40608924	SINE|Alu|AluSq2	+	chr19	40609745	40616984	STRG.35041.3	+	40609745,40610531,40611151,40611858,40612072,40613064,40613403,40613915,40614314,40616888	40609871,40610657,40611394,40611984,40612192,40613196,40613529,40614038,40614446,40616984	0.750000
adrenal_gland_female_adult_51_years	chr8	32927958	32927978	32927967	+	RAMPAGE_only	7	9	29	1.674586	4.235926	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.758621
adrenal_gland_female_adult_51_years	chr13	98988460	98988461	98988460	-	RAMPAGE_only	11	11	11	0.635188	2.663533	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98793486	98978084	DOCK9|NM_001130048.1	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,98977783	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,98978084	0.818182
adrenal_gland_female_adult_51_years	chr8	29017535	29017536	29017535	+	RAMPAGE_only	6	6	7	0.404210	2.584963	chr8	29017457	29017772	LINE|L2|L2	-	chr8	28963862	29051549	HMBOX1|ENST00000524238.3	+	28963862,28970042,28980070,29009071,29018759,29045360,29047357,29048956,29049289,29051017	28963890,28970519,28980156,29009182,29018913,29045443,29047453,29049048,29049361,29051549	0.571429
adrenal_gland_female_adult_51_years	chr17	32684271	32684272	32684271	-	RAMPAGE_only	8	8	9	0.519699	2.750000	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32494718	32659406	MYO1D|ENST00000577352.5	-	32494718,32605086,32638721,32653842,32654476,32659114	32494915,32605241,32638835,32653947,32654621,32659406	0.777778
adrenal_gland_female_adult_51_years	chr3	114759252	114759277	114759276	-	High_confidence	11	11	23	1.328120	3.936180	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.739130
adrenal_gland_female_adult_51_years	chr18	12653084	12653098	12653084	-	High_confidence	5	6	10	0.577443	2.921928	chr18	12653065	12653265	DNA|hAT-Charlie|MER20	+	chr18	12506495	12653085	SPIRE1|ENST00000449797.5	-	12506495,12512453,12535475,12546673,12635061,12653000	12506641,12512531,12535601,12546904,12635096,12653085	1.000000
adrenal_gland_female_adult_51_years	chr4	79492595	79492605	79492595	+	High_confidence	6	6	14	0.808421	3.128085	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	1.000000
adrenal_gland_female_adult_51_years	chr4	184399588	184399613	184399612	-	RAMPAGE_only	3	3	6	0.346466	2.584963	chr4	184399580	184399651	LINE|L1|L1MD	-	chr4	184389021	184418590	IRF2|ENST00000505067.5	-	184389021,184390702,184398914,184407178,184408157,184418166,184418531	184389066,184390749,184399079,184407283,184408275,184418213,184418590	0.500000
adrenal_gland_female_adult_51_years	chr7	107580245	107580267	107580264	+	High_confidence	437	438	1970	113.756341	6.747466	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.960406
adrenal_gland_female_adult_51_years	chr14	94592124	94592716	94592490	+	RAMPAGE_only	29	29	612	35.339533	7.298157	chr14	94592430	94592576	SINE|MIR|MIR3	-	chr14	94581614	94593115	SERPINA5|ENST00000554276.1	+	94581614,94587345,94590040,94590748,94592056	94581710,94587981,94590311,94590896,94593115	0.998366
adrenal_gland_female_adult_51_years	chr1	86703112	86703119	86703112	+	RAMPAGE_only	9	9	29	1.674586	4.235926	chr1	86702882	86703173	SINE|Alu|AluSz	+	chr1	86704569	86748184	SH3GLB1|NM_016009.4	+	86704569,86715723,86719506,86722539,86724312,86734601,86735078,86742207,86743127	86704971,86715865,86719635,86722673,86724405,86734691,86735179,86742436,86748184	0.931034
adrenal_gland_female_adult_51_years	chr4	87499820	87499853	87499844	-	RAMPAGE_only	10	10	29	1.674586	4.039149	chr4	87499693	87499843	LINE|RTE-BovB|MamRTE1	-	chr4	87494416	87528619	SPARCL1|ENST00000535835.5	-	87494416,87494980,87499520,87504821,87528554	87494598,87495127,87499585,87504923,87528619	0.551724
adrenal_gland_female_adult_51_years	chr2	27774800	27774850	27774800	+	RAMPAGE_only	2	2	13	0.750676	3.085055	chr2	27774629	27774985	LINE|L2|L2a	-	chr2	27772189	27779697	MRPL33|ENST00000476552.1	+	27772189,27772673,27774423,27779432	27772385,27772692,27774530,27779697	0.923077
adrenal_gland_female_adult_51_years	chr18	34709350	34709374	34709350	+	High_confidence	3	3	12	0.692932	3.584963	chr18	34709150	34709395	LINE|L2|L2c	-	chr18	34709355	34812056	DTNA|ENST00000585446.1	+	34709355,34794036,34806218,34811958	34709517,34794250,34806304,34812056	0.666667
adrenal_gland_female_adult_51_years	chr12	123390743	123390744	123390743	+	High_confidence	10	10	15	0.866165	3.640224	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.866667
adrenal_gland_female_adult_51_years	chr12	120465650	120465705	120465650	-	High_confidence	8	8	33	1.905563	3.870004	chr12	120465539	120465607	SINE|MIR|MIRb	-	chr12	120461710	120464943	SRSF9|ENST00000548792.1	-	120461710,120463949	120462162,120464943	1.000000
adrenal_gland_female_adult_51_years	chr1	246176493	246176563	246176562	-	High_confidence	24	25	98	5.658945	5.627016	chr1	246176527	246176817	SINE|Alu|AluJb	-	chr1	245749564	246176526	STRG.3638.3	-	245749564,245764040,245858495,245863798,245915529,245927930,245929869,246176464	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246176526	0.897959
adrenal_gland_female_adult_51_years	chr3	139344537	139344584	139344547	+	High_confidence	122	122	350	20.210517	5.617065	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.985714
adrenal_gland_female_adult_51_years	chr14	94109769	94109778	94109769	+	High_confidence	3	3	9	0.519699	2.500000	chr14	94109433	94109807	LTR|ERV1|MER65B	-	chr14	94110732	94116698	IFI27|ENST00000616764.4	+	94110732,94110925,94111624,94114850,94115780,94116441	94110797,94110978,94111773,94114880,94115942,94116698	0.888889
adrenal_gland_female_adult_51_years	chr1	207745580	207745581	207745580	+	RAMPAGE_only	5	5	8	0.461955	2.807355	chr1	207745199	207747909	LTR|ERV1|HUERS-P3b-int	+	chr1	207752037	207795516	CD46|NM_002389.4	+	207752037,207757013,207757539,207759638,207761248,207767012,207767606,207767778,207770320,207783291,207785070,207785618,207790252,207793518	207752309,207757202,207757642,207759724,207761446,207767195,207767651,207767823,207770362,207783330,207785106,207785682,207790345,207795516	0.750000
adrenal_gland_female_adult_51_years	chr14	77736987	77737004	77736987	-	High_confidence	2	2	7	0.404210	2.521641	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.857143
adrenal_gland_female_adult_51_years	chr12	118126515	118126524	118126515	-	RAMPAGE_only	3	3	10	0.577443	2.641604	chr12	118126091	118126475	LTR|ERVL|MER76	-	chr12	118063592	118104005	VSIG10|NM_019086.5	-	118063592,118068376,118071051,118071358,118073698,118079345,118082126,118095532,118103592	118066694,118068597,118071067,118071469,118073992,118079606,118082429,118095814,118104005	0.600000
adrenal_gland_female_adult_51_years	chr8	116648830	116648907	116648830	-	RAMPAGE_only	6	6	37	2.136540	4.365689	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
adrenal_gland_female_adult_51_years	chr19	51795131	51795172	51795171	+	High_confidence	3	3	17	0.981654	3.616875	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.764706
adrenal_gland_female_adult_51_years	chr2	119431404	119431423	119431422	+	High_confidence	8	8	16	0.923909	3.452820	chr2	119431376	119431442	SINE|MIR|MIRc	-	chr2	119431868	119438520	TMEM37|ENST00000306406.4	+	119431868,119436888	119431924,119438520	0.562500
adrenal_gland_female_adult_51_years	chr1	207220273	207220276	207220273	+	High_confidence	5	5	9	0.519699	2.500000	chr1	207219801	207220376	LTR|ERV1|LTR61	+	chr1	207220318	207228877	STRG.3161.1	+	207220318,207228787	207220607,207228877	0.666667
adrenal_gland_female_adult_51_years	chr9	72363469	72363546	72363545	-	High_confidence	4	4	22	1.270375	3.508695	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.772727
adrenal_gland_female_adult_51_years	chr11	77571152	77571179	77571170	+	High_confidence	4	4	16	0.923909	3.189898	chr11	77570921	77571455	LTR|ERV1|LTR61	+	chr11	77571088	77575662	LOC646029|NR_130930.1	+	77571088,77571514,77574210	77571310,77571685,77575662	0.937500
adrenal_gland_female_adult_51_years	chr8	133119554	133119555	133119554	-	RAMPAGE_only	5	7	7	0.404210	2.807355	chr8	133119359	133119724	LTR|ERVL-MaLR|MLT1A0	-	chr8	133036727	133103066	SLA|NM_001045556.2	-	133036727,133039997,133044983,133047829,133049901,133050815,133060099,133074852,133102552	133038737,133040130,133045115,133047933,133049988,133050915,133060200,133075130,133103066	0.857143
adrenal_gland_female_adult_51_years	chr11	65434769	65434980	65434819	+	RAMPAGE_only	19	19	110	6.351877	5.329977	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.981818
adrenal_gland_female_adult_51_years	chr9	120519535	120519578	120519535	-	RAMPAGE_only	5	5	21	1.212631	4.106603	chr9	120519385	120519845	LTR|ERV1|MER65A	+	chr9	120406145	120536437	CDK5RAP2|ENST00000483412.5	-	120406145,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349,120487293,120491306,120518426,120524985,120527805,120528743,120529977,120536371	120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477450,120487437,120491477,120518645,120525078,120527925,120528797,120530140,120536437	1.000000
adrenal_gland_female_adult_51_years	chr9	62376790	62376798	62376790	-	High_confidence	7	7	14	0.808421	2.753434	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.928571
adrenal_gland_female_adult_51_years	chr2	203533411	203533440	203533439	-	High_confidence	4	4	11	0.635188	3.321928	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.909091
adrenal_gland_female_adult_51_years	chr5	160199150	160199156	160199155	+	High_confidence	62	73	130	7.506764	4.405340	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.953846
adrenal_gland_female_adult_51_years	chr1	179302318	179302331	179302330	+	RAMPAGE_only	3	3	9	0.519699	2.947703	chr1	179302291	179302649	LTR|ERVL-MaLR|THE1D	+	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	1.000000
adrenal_gland_female_adult_51_years	chr17	47056698	47056737	47056730	-	RAMPAGE_only	13	13	33	1.905563	4.351410	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.818182
adrenal_gland_female_adult_51_years	chrX	73994875	73994876	73994875	+	RAMPAGE_only	12	13	14	0.808421	3.324863	chrX	73994826	73995038	SINE|Alu|AluSp	-	chrX	73944594	74008854	STRG.38473.3	+	73944594,73946998,73998767,73998953,74004269	73944662,73947374,73998844,74000496,74008854	0.928571
adrenal_gland_female_adult_51_years	chr2	27910882	27910914	27910882	+	High_confidence	18	23	87	5.023757	5.507247	chr2	27910851	27911226	LTR|ERVL-MaLR|THE1C	+	chr2	27910940	28338901	STRG.4047.8	+	27910940,27929831,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28327273,28338449	27911143,27929908,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28327447,28338901	0.954023
adrenal_gland_female_adult_51_years	chr3	57267742	57267773	57267772	+	RAMPAGE_only	12	12	22	1.270375	3.754442	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.863636
adrenal_gland_female_adult_51_years	chr8	119417858	119417880	119417858	+	RAMPAGE_only	3	3	10	0.577443	2.947703	chr8	119417775	119417879	SINE|MIR|MIR3	+	chr8	119416311	119424438	NOV|NM_002514.3	+	119416311,119416743,119418057,119419130,119422835	119416616,119416969,119418309,119419345,119424438	0.800000
adrenal_gland_female_adult_51_years	chr7	66430320	66430343	66430320	-	High_confidence	2	2	9	0.519699	2.947703	chr7	66430180	66430480	LTR|ERV1|MER61A	-	chr7	66423231	66430224	STRG.15631.3	-	66423231,66427948,66429678,66429883,66430119	66423878,66428040,66429757,66430017,66430224	0.777778
adrenal_gland_female_adult_51_years	chr19	56833291	56833345	56833344	-	High_confidence	8	10	33	1.905563	4.663910	chr19	56833344	56833537	LTR|ERVL-MaLR|MLT1O	-	chr19	56814387	56833747	PEG3|ENST00000647852.1	-	56814387,56817745,56818599,56821650,56822752,56823589,56824261,56826387,56827133,56833289,56833642	56817579,56817838,56818702,56821754,56822836,56823679,56824427,56826463,56827246,56833420,56833747	0.878788
adrenal_gland_female_adult_51_years	chr15	85330260	85330280	85330260	-	RAMPAGE_only	2	2	9	0.519699	2.750000	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.666667
adrenal_gland_female_adult_51_years	chr2	26729687	26729780	26729779	+	RAMPAGE_only	12	12	39	2.252029	4.168466	chr2	26729553	26729852	SINE|Alu|AluJb	+	chr2	26692750	26733420	KCNK3|ENST00000302909.3	+	26692750,26727666	26693158,26733420	0.974359
adrenal_gland_female_adult_51_years	chr12	113215170	113215192	113215171	+	RAMPAGE_only	6	14	27	1.559097	3.986188	chr12	113215191	113215364	SINE|MIR|MIRb	+	chr12	113221049	113267879	TPCN1|ENST00000552642.5	+	113221049,113260367,113266179,113267842	113221236,113260492,113266356,113267879	0.814815
adrenal_gland_female_adult_51_years	chr14	91462210	91462211	91462210	-	High_confidence	7	8	9	0.519699	2.947703	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.888889
adrenal_gland_female_adult_51_years	chr2	201115935	201116008	201116007	+	High_confidence	7	7	40	2.309773	4.375071	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201176687	CFLAR|ENST00000309955.7	+	201116103,201129728,201133028,201135971,201140356,201145377,201149002,201149753,201160431,201163834	201116481,201130146,201133134,201136107,201140439,201145432,201149052,201149835,201160942,201176687	0.925000
adrenal_gland_female_adult_51_years	chr15	40264411	40264438	40264411	+	High_confidence	8	8	20	1.154887	3.784184	chr15	40264251	40264457	LINE|L1|L1M5	-	chr15	40264455	40266491	STRG.28860.5	+	40264455,40264780,40265841	40264528,40264989,40266491	0.950000
adrenal_gland_female_adult_51_years	chr1	179322481	179322490	179322489	+	RAMPAGE_only	6	8	21	1.212631	3.446439	chr1	179322375	179322519	SINE|Alu|AluSx3	-	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.857143
adrenal_gland_female_adult_51_years	chr19	5680234	5680262	5680234	-	High_confidence	4	4	19	1.097142	3.286629	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
adrenal_gland_female_adult_51_years	chr22	37855566	37855587	37855575	+	RAMPAGE_only	4	4	13	0.750676	3.334679	chr22	37855622	37855711	SINE|tRNA|LFSINE_Vert	+	chr22	37858564	37871290	EIF3L|ENST00000464790.1	+	37858564,37862968,37863271,37870175,37871199	37858740,37863038,37863345,37870347,37871290	0.769231
adrenal_gland_female_adult_51_years	chr1	20639925	20639975	20639954	+	RAMPAGE_only	10	10	52	3.002705	4.812145	chr1	20640002	20640112	LINE|L2|L2b	+	chr1	20638128	20651316	PINK1|ENST00000492302.1	+	20638128,20644489,20645559,20648504,20650433	20639992,20644672,20645723,20649231,20651316	0.961538
adrenal_gland_female_adult_51_years	chr11	77672343	77672430	77672375	-	RAMPAGE_only	39	41	263	15.186760	5.985501	chr11	77672368	77672530	SINE|Alu|AluJb	-	chr11	77660027	77700998	STRG.23743.3	-	77660027,77672041,77675035,77676791,77678085,77683709,77685104,77691158,77693506,77698486,77700720	77667491,77672191,77675256,77676999,77678153,77683819,77685159,77691238,77693611,77698693,77700998	0.893536
adrenal_gland_female_adult_51_years	chr2	95121537	95121566	95121537	-	High_confidence	2	2	12	0.692932	3.251629	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	1.000000
adrenal_gland_female_adult_51_years	chr16	21634371	21634405	21634371	-	RAMPAGE_only	6	6	26	1.501353	3.893661	chr16	21631296	21636946	LTR|ERV1|HERV9NC-int	-	chr16	21629856	21637059	STRG.30392.1	-	21629856,21636883	21630749,21637059	0.923077
adrenal_gland_female_adult_51_years	chr12	119704490	119704574	119704554	-	High_confidence	66	73	277	15.995181	6.629612	chr12	119704528	119704734	DNA|hAT-Charlie|MER20	-	chr12	119685920	119704551	STRG.26233.1	-	119685920,119690150,119697658,119697975,119700744,119701623,119701849,119704362	119688255,119690454,119697838,119698054,119700825,119701752,119701958,119704551	0.942238
adrenal_gland_female_adult_51_years	chr5	150640269	150640315	150640314	+	High_confidence	4	4	16	0.923909	3.640224	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640016	150659207	STRG.12295.2	+	150640016,150647943,150656403	150640134,150650303,150659207	0.937500
adrenal_gland_female_adult_51_years	chr14	50754761	50754773	50754761	-	RAMPAGE_only	2	3	6	0.346466	2.584963	chr14	50754738	50754803	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
adrenal_gland_female_adult_51_years	chr5	41425935	41425936	41425935	+	High_confidence	34	40	45	2.598495	3.563346	chr5	41425316	41427700	LINE|L1|L1MC1	-	chr5	41426030	41428562	STRG.11107.1	+	41426030,41428404	41426151,41428562	1.000000
adrenal_gland_female_adult_51_years	chr2	55618850	55618870	55618850	-	High_confidence	19	20	41	2.367518	4.859641	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.926829
adrenal_gland_female_adult_51_years	chr16	81664342	81664344	81664342	+	RAMPAGE_only	32	40	52	3.002705	3.005441	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.980769
adrenal_gland_female_adult_51_years	chr7	134527596	134527597	134527596	+	High_confidence	83	88	96	5.543456	5.784007	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.947917
adrenal_gland_female_adult_51_years	chr18	23576944	23576948	23576944	-	High_confidence	16	16	28	1.616841	3.424174	chr18	23576532	23578195	LTR|ERV1|LTR12C	-	chr18	23573451	23576947	NPC1|ENST00000587223.1	-	23573451,23576480	23573574,23576947	1.000000
adrenal_gland_female_adult_51_years	chr5	93553788	93553815	93553814	-	RAMPAGE_only	3	3	8	0.461955	2.750000	chr5	93553755	93553876	LINE|RTE-BovB|MamRTE1	-	chr5	93409358	93570793	NR2F1-AS1|ENST00000607797.5	-	93409358,93553760,93554873,93563363,93569889	93411509,93553863,93554995,93563463,93570793	0.875000
adrenal_gland_female_adult_51_years	chr7	101217578	101217595	101217578	-	High_confidence	3	3	17	0.981654	3.690117	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
adrenal_gland_female_adult_51_years	chr4	21544656	21544671	21544670	-	High_confidence	31	32	95	5.485712	5.222348	chr4	21544311	21544682	LTR|ERVL-MaLR|MLT1E2	-	chr4	21544063	21544352	STRG.9469.1	-	21544063	21544352	0.631579
adrenal_gland_female_adult_51_years	chr20	44738989	44738993	44738992	-	High_confidence	7	7	16	0.923909	3.006239	chr20	44738735	44739078	LTR|ERVL-MaLR|MLT1J2	-	chr20	44694891	44738896	KCNK15-AS1|ENST00000427598.5	-	44694891,44716624,44738819	44695507,44716793,44738896	0.500000
adrenal_gland_female_adult_51_years	chr4	128428000	128428018	128428005	+	High_confidence	16	16	34	1.963307	4.601410	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.735294
adrenal_gland_female_adult_51_years	chr15	69337422	69337475	69337474	+	RAMPAGE_only	10	10	28	1.616841	4.208966	chr15	69335705	69337814	LTR|ERV1|HUERS-P1-int	+	chr15	69359949	69407641	PAQR5|ENST00000340965.4	+	69359949,69379882,69384676,69389653,69397467,69399973,69403580	69360131,69380010,69384882,69389780,69397564,69400115,69407641	1.000000
adrenal_gland_female_adult_51_years	chr2	130428523	130428542	130428533	-	High_confidence	5	5	16	0.923909	3.506891	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046259.1	-	130416749,130419070,130425090,130425913,130427703	130418298,130419245,130425158,130426038,130428546	0.937500
adrenal_gland_female_adult_51_years	chr3	114624940	114625007	114625006	-	High_confidence	59	63	546	31.528407	5.534242	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114329754	114624945	STRG.8167.6	-	114329754,114350273,114380216,114380776,114383615,114388064,114389004,114500351,114624876	114339426,114351878,114380404,114380940,114383746,114388123,114389105,114500391,114624945	0.946886
adrenal_gland_female_adult_51_years	chr2	113237055	113237108	113237107	-	High_confidence	4	4	16	0.923909	3.577820	chr2	113237106	113237236	SINE|MIR|MIR	-	chr2	113235344	113236929	PAX8|ENST00000554352.1	-	113235344,113236600	113235582,113236929	0.687500
adrenal_gland_female_adult_51_years	chr4	95000468	95000481	95000480	+	RAMPAGE_only	8	8	20	1.154887	4.084184	chr4	95000399	95000534	SINE|Alu|AluSc	+	chr4	94996231	95154673	BMPR1B|ENST00000512312.5	+	94996231,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547	94996384,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95154673	0.850000
adrenal_gland_female_adult_51_years	chr3	33838228	33838257	33838232	+	RAMPAGE_only	6	6	24	1.385864	3.918296	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.916667
adrenal_gland_female_adult_51_years	chr19	7893595	7893601	7893595	+	High_confidence	24	27	41	2.367518	3.548258	chr19	7893546	7893832	SINE|Alu|AluSg	-	chr19	7893595	7898808	LRRC8E|ENST00000593511.1	+	7893595,7895598,7898660	7893859,7895741,7898808	0.926829
adrenal_gland_female_adult_51_years	chr12	118139096	118139097	118139096	+	High_confidence	13	13	14	0.808421	3.392747	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.785714
adrenal_gland_female_adult_51_years	chr9	111784061	111784062	111784061	-	High_confidence	11	14	14	0.808421	3.378783	chr9	111783697	111784151	LTR|ERVL|MER70A	-	chr9	111758771	111784045	STRG.19976.1	-	111758771,111775790,111780929,111783798	111758848,111775975,111781017,111784045	0.571429
adrenal_gland_female_adult_51_years	chr2	7023778	7023790	7023780	+	RAMPAGE_only	9	13	26	1.501353	3.863465	chr2	7023743	7023814	SINE|MIR|MIRc	-	chr2	6917391	7044179	RNF144A|NM_014746.4	+	6917391,6940947,6996915,7014453,7014711,7020472,7024368,7030125,7039628	6917622,6941147,6997061,7014558,7014772,7020680,7024516,7030215,7044179	0.961538
adrenal_gland_female_adult_51_years	chr19	39839801	39839821	39839801	-	High_confidence	7	7	18	1.039398	3.734522	chr19	39839431	39839808	LINE|L2|L2a	-	chr19	39834457	39840441	FBL|ENST00000595545.5	-	39834457,39836555,39837710,39839034,39840232,39840413	39834813,39836668,39837843,39839205,39840327,39840441	0.944444
adrenal_gland_female_adult_51_years	chr4	2861127	2861155	2861154	+	RAMPAGE_only	8	8	23	1.328120	4.175736	chr4	2860917	2861297	LINE|L2|L2a	-	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.608696
adrenal_gland_female_adult_51_years	chr7	102973265	102973291	102973290	-	High_confidence	13	13	30	1.732330	4.280395	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102877519	102973252	STRG.16381.2	-	102877519,102878330,102883304,102883567,102913085,102926273,102931880,102968021,102973149	102877593,102878450,102883467,102883685,102913215,102926374,102931933,102968117,102973252	0.666667
adrenal_gland_female_adult_51_years	chr18	63329288	63329290	63329289	-	RAMPAGE_only	5	7	10	0.577443	2.947703	chr18	63329193	63329512	DNA|TcMar-Tigger|MER46C	-	chr18	63327725	63367206	KDSR|ENST00000645214.2	-	63327725,63335256,63338799,63344409,63350887,63355203,63355497,63359735,63362778,63367010	63331901,63335358,63338883,63344493,63351079,63355299,63355563,63359792,63362868,63367206	0.900000
adrenal_gland_female_adult_51_years	chr11	10570416	10570417	10570416	-	RAMPAGE_only	22	22	23	1.328120	3.823068	chr11	10570034	10570437	LTR|ERVL-MaLR|MLT1E2	-	chr11	10557865	10568818	LYVE1|NM_006691.3	-	10557865,10559815,10560494,10563939,10564202,10568447	10559297,10559894,10560800,10564079,10564374,10568818	0.782609
adrenal_gland_female_adult_51_years	chr11	71999605	71999627	71999605	+	High_confidence	5	5	41	2.367518	4.363530	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999600	72002697	IL18BP|ENST00000534583.5	+	71999600,72000350,72001200,72001404,72001783,72002552	72000012,72000557,72001324,72001552,72001948,72002697	1.000000
adrenal_gland_female_adult_51_years	chr3	129724020	129724117	129724116	-	High_confidence	65	71	247	14.262851	5.379820	chr3	129724100	129724190	LINE|CR1|L3	+	chr3	129648533	129724099	STRG.8456.3	-	129648533,129654967,129670329,129723963	129651795,129655103,129671264,129724099	0.979757
adrenal_gland_female_adult_51_years	chrX	115647977	115647987	115647984	+	RAMPAGE_only	2	3	9	0.519699	2.750000	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.888889
adrenal_gland_female_adult_51_years	chr15	57451562	57451563	57451562	+	RAMPAGE_only	14	14	16	0.923909	3.456565	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376871	57548255	STRG.29186.2	+	57376871,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57377165,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57548255	0.937500
adrenal_gland_female_adult_51_years	chr15	40389163	40389197	40389196	+	RAMPAGE_only	7	7	20	1.154887	3.386637	chr15	40389143	40389448	SINE|Alu|AluSp	-	chr15	40383254	40392023	KNSTRN|ENST00000559083.1	+	40383254,40389505,40389835,40391492,40391948	40383322,40389611,40389929,40391554,40392023	0.900000
adrenal_gland_female_adult_51_years	chr1	100268167	100268281	100268280	+	RAMPAGE_only	38	38	75	4.330825	4.509247	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266288	100292712	STRG.1810.2	+	100266288,100266523,100268136,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100292712	0.986667
adrenal_gland_female_adult_51_years	chr1	32221748	32221803	32221802	+	High_confidence	15	15	78	4.504058	5.349524	chr1	32221596	32221823	SINE|MIR|MIRb	-	chr1	32221927	32226295	EIF3I|ENST00000355082.9	+	32221927,32222357,32222537,32224033,32224409,32226170	32222032,32222444,32222630,32224121,32224475,32226295	0.756410
adrenal_gland_female_adult_51_years	chrX	120143500	120143501	120143500	+	RAMPAGE_only	14	14	14	0.808421	2.835238	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120139052	120143889	STRG.38883.1	+	120139052,120143722	120139119,120143889	0.642857
adrenal_gland_female_adult_51_years	chr4	182905196	182905208	182905207	-	RAMPAGE_only	8	8	18	1.039398	3.836592	chr4	182904639	182905323	LINE|L2|L2c	+	chr4	182890254	182917361	DCTD|ENST00000507543.5	-	182890254,182893030,182894488,182914922,182915460,182916722,182917310	182891477,182893127,182894605,182915058,182915575,182916857,182917361	1.000000
adrenal_gland_female_adult_51_years	chr9	111284841	111284875	111284874	-	High_confidence	22	22	34	1.963307	4.184863	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.823529
adrenal_gland_female_adult_51_years	chr17	1659356	1659357	1659356	-	RAMPAGE_only	8	8	12	0.692932	3.459432	chr17	1659014	1659325	SINE|Alu|AluSx3	-	chr17	1650630	1684837	PRPF8|ENST00000572621.5	-	1650630,1651107,1651413,1651647,1653541,1653776,1655349,1656391,1656647,1658252,1658525,1659356,1659840,1660431,1660697,1660992,1661270,1661610,1661905,1673080,1673356,1673745,1674441,1675151,1675619,1675927,1676206,1676504,1676975,1677564,1678517,1678761,1679016,1679290,1679608,1680725,1680928,1681477,1681819,1682128,1683532,1684471	1650956,1651310,1651553,1651788,1653683,1654016,1655543,1656565,1656761,1658381,1658763,1659548,1660001,1660578,1660827,1661162,1661406,1661790,1662153,1673197,1673567,1673892,1674680,1675339,1675812,1676054,1676370,1676711,1677172,1677694,1678652,1678881,1679206,1679410,1679799,1680831,1681054,1681690,1682038,1682293,1683701,1684837	0.916667
adrenal_gland_female_adult_51_years	chr8	144106344	144106365	144106364	+	RAMPAGE_only	2	2	7	0.404210	2.584963	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144104511	144107611	MAF1|ENST00000534585.5	+	144104511,144105639,144105868,144106075,144106342,144106834,144107087	144104858,144105766,144105997,144106241,144106674,144106963,144107611	0.857143
adrenal_gland_female_adult_51_years	chr4	86453161	86453212	86453202	-	High_confidence	11	13	67	3.868870	4.137510	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.925373
adrenal_gland_female_adult_51_years	chr9	83433994	83433997	83433994	-	RAMPAGE_only	5	5	10	0.577443	2.921928	chr9	83433440	83433952	DNA|hAT-Charlie|MER1A	-	chr9	83244621	83467742	FRMD3|NM_001244960.1	-	83244621,83290602,83298747,83299111,83309535,83310484,83311886,83313659,83335515,83343189,83349678,83372912,83389603,83467617	83248516,83290727,83298816,83299186,83309624,83310548,83311975,83313747,83335639,83343287,83349757,83372955,83389708,83467742	0.800000
adrenal_gland_female_adult_51_years	chr20	23386663	23386699	23386698	-	RAMPAGE_only	12	12	19	1.097142	3.536887	chr20	23386573	23386920	LTR|ERVL|MER77	+	chr20	23374521	23421488	NAPB|ENST00000377026.4	-	23374521,23379444,23379866,23381212,23389945,23390208,23394921,23395138,23397071,23402992,23421304	23377486,23379495,23379935,23381317,23390030,23390264,23394999,23395185,23397188,23403072,23421488	1.000000
adrenal_gland_female_adult_51_years	chr9	123758083	123758104	123758103	-	High_confidence	21	21	74	4.273081	5.155798	chr9	123758093	123758254	SINE|MIR|MIRb	-	chr9	123569544	123757759	DENND1A|ENST00000474676.1	-	123569544,123583168,123609435,123630375,123652012,123667025,123671290,123757702	123569595,123583270,123609481,123630476,123652123,123667079,123671371,123757759	0.905405
adrenal_gland_female_adult_51_years	chr10	103181328	103181329	103181328	-	High_confidence	28	28	32	1.847819	4.687500	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103097307	103181320	STRG.22186.4	-	103097307,103098930,103099925,103101044,103101234,103105705,103106588,103111744,103139405,103174857,103181184	103097374,103098984,103100019,103101102,103101326,103105801,103106706,103111805,103139479,103174982,103181320	0.593750
adrenal_gland_female_adult_51_years	chr3	120395860	120395919	120395860	-	RAMPAGE_only	8	11	45	2.598495	4.519088	chr3	120395790	120395849	SINE|MIR|MIR3	-	chr3	120394213	120451071	FSTL1|NM_007085.4	-	120394213,120399882,120402807,120403241,120404852,120409531,120410951,120411853,120415922,120450683,120450896	120396996,120399959,120402918,120403354,120404971,120409662,120410984,120411983,120416027,120450746,120451071	1.000000
adrenal_gland_female_adult_51_years	chr4	182738419	182738444	182738419	+	RAMPAGE_only	2	2	9	0.519699	2.725481	chr4	182738424	182738481	SINE|tRNA|LFSINE_Vert	+	chr4	182680323	182755353	TENM3|ENST00000502950.1	+	182680323,182680542,182681813,182688165,182714086,182728964,182730199,182730877,182736807,182738400,182743169,182744142,182751799,182753449,182754384	182680349,182680737,182682014,182688351,182714233,182729181,182730319,182731139,182737075,182738544,182743419,182744163,182752032,182753604,182755353	1.000000
adrenal_gland_female_adult_51_years	chr4	39627120	39627121	39627120	-	High_confidence	14	14	17	0.981654	2.899397	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.941176
adrenal_gland_female_adult_51_years	chr9	127509520	127509521	127509520	-	RAMPAGE_only	6	7	8	0.461955	2.750000	chr9	127509331	127509530	SINE|MIR|MIR3	+	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	0.875000
adrenal_gland_female_adult_51_years	chr20	45833293	45833308	45833293	-	High_confidence	22	25	61	3.522404	4.023481	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.967213
adrenal_gland_female_adult_51_years	chr2	227164620	227164645	227164620	+	High_confidence	14	14	29	1.674586	4.807355	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164569	227270941	STRG.6518.1	+	227164569,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270941	0.655172
adrenal_gland_female_adult_51_years	chr9	127509355	127509376	127509375	-	RAMPAGE_only	6	6	32	1.847819	4.309035	chr9	127509331	127509530	SINE|MIR|MIR3	+	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	0.812500
adrenal_gland_female_adult_51_years	chr9	35699100	35699148	35699147	-	High_confidence	5	5	24	1.385864	4.142915	chr9	35699139	35699218	LTR|Gypsy|LTR81B	+	chr9	35698043	35699328	TLN1|ENST00000489255.2	-	35698043,35698322,35698616,35698807,35699031	35698172,35698505,35698679,35698933,35699328	0.500000
adrenal_gland_female_adult_51_years	chr10	114699005	114699049	114699005	-	High_confidence	3	4	21	1.212631	4.011365	chr10	114698749	114699028	LINE|L1|HAL1	+	chr10	114436037	114698965	STRG.22217.5	-	114436037,114437843,114439175,114440081,114441016,114441721,114444028,114445311,114447879,114451623,114453378,114465697,114468180,114472976,114473878,114487957,114491790,114545004,114547649,114571296,114575415,114601826,114698805	114436373,114437924,114439250,114440089,114441077,114441786,114444134,114445403,114448020,114451671,114453483,114465827,114468216,114473132,114473956,114488016,114491878,114545098,114547776,114571406,114575599,114601961,114698965	0.761905
adrenal_gland_female_adult_51_years	chrX	119127811	119127818	119127817	-	RAMPAGE_only	34	34	91	5.254735	5.437924	chrX	119127624	119127833	LINE|L2|L2a	+	chrX	119078634	119150579	KIAA1210|ENST00000402510.2	-	119078634,119083014,119085382,119086545,119093666,119093988,119096493,119104991,119108336,119109075,119116495,119123581,119147472,119150290	119081504,119083120,119085546,119089746,119093775,119094096,119096691,119105147,119108471,119109202,119116664,119123652,119147593,119150579	1.000000
adrenal_gland_female_adult_51_years	chr20	25191781	25191838	25191794	-	High_confidence	10	10	46	2.656239	4.986189	chr20	25191623	25192078	LTR|ERVL|MER70A	-	chr20	25184817	25191834	STRG.36085.1	-	25184817,25186896,25187852,25190217,25191726	25186160,25186979,25187947,25190302,25191834	0.913043
adrenal_gland_female_adult_51_years	chr20	44907245	44907350	44907288	+	RAMPAGE_only	4	5	23	1.328120	4.055958	chr20	44907296	44907477	SINE|Alu|FAM	+	chr20	44885710	44908532	YWHAB|ENST00000372839.7	+	44885710,44887647,44901530,44903992,44904967,44906000,44906381	44885886,44887742,44901833,44904116,44905131,44906096,44908532	1.000000
adrenal_gland_female_adult_51_years	chr14	53217609	53217622	53217609	+	High_confidence	6	8	17	0.981654	3.572469	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217711	53687258	AL365295.1|ENST00000456100.5	+	53217711,53318030,53369451,53687198	53218055,53318138,53369501,53687258	0.647059
adrenal_gland_female_adult_51_years	chr15	75879161	75879162	75879161	+	RAMPAGE_only	25	25	26	1.501353	3.653661	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75868950	75899577	UBE2Q2|ENST00000567921.1	+	75868950,75873427,75883365,75896994,75899426	75869010,75873568,75883424,75897061,75899577	0.961538
adrenal_gland_female_adult_51_years	chr11	67886471	67886535	67886534	+	High_confidence	27	34	128	7.391275	4.794284	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.992188
adrenal_gland_female_adult_51_years	chr11	65887614	65887615	65887614	-	High_confidence	6	6	8	0.461955	2.521641	chr11	65887463	65887575	LINE|L2|L2	-	chr11	65884008	65888490	FIBP|ENST00000533037.5	-	65884008,65884391,65884569,65884934,65885077,65885529,65887599,65887933,65888333	65884043,65884489,65884656,65884998,65885186,65885663,65887726,65888132,65888490	0.500000
adrenal_gland_female_adult_51_years	chr6	166957430	166957439	166957430	-	High_confidence	6	7	11	0.635188	2.921928	chr6	166957416	166957859	LINE|L2|L2a	+	chr6	166929632	166957422	STRG.14801.3	-	166929632,166931043,166938894,166943018,166946681,166948569,166952487,166956096,166957386	166929791,166931118,166939008,166943089,166946739,166948625,166952548,166956191,166957422	0.727273
adrenal_gland_female_adult_51_years	chr2	200656127	200656136	200656135	+	RAMPAGE_only	11	12	28	1.616841	4.494680	chr2	200656100	200656334	LTR|Gypsy|MamGypsy2-I	+	chr2	200660036	200670650	AOX1|ENST00000260930.10	+	200660036,200661578,200662854,200666686,200668680,200669574,200670628	200660069,200661631,200662969,200666752,200668803,200669742,200670650	0.571429
adrenal_gland_female_adult_51_years	chr6	129584033	129584042	129584041	-	RAMPAGE_only	6	6	10	0.577443	2.947703	chr6	129583973	129584076	LINE|RTE-BovB|MamRTE1	-	chr6	129576131	129710225	ARHGAP18|ENST00000368149.2	-	129576131,129580069,129583987,129599215,129600641,129605876,129607892,129611532,129616211,129618686,129629352,129634041,129638393,129641815,129710023	129578604,129580131,129584112,129599356,129600848,129605959,129608052,129611610,129616303,129618852,129629522,129634105,129638629,129642018,129710225	0.900000
adrenal_gland_female_adult_51_years	chr4	102431237	102431250	102431237	-	High_confidence	2	2	11	0.635188	2.721928	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.909091
adrenal_gland_female_adult_51_years	chr9	37426564	37426647	37426623	+	RAMPAGE_only	5	5	34	1.963307	4.675698	chr9	37426667	37426970	SINE|Alu|AluSx3	+	chr9	37427705	37436989	GRHPR|ENST00000497693.1	+	37427705,37436660	37432138,37436989	1.000000
adrenal_gland_female_adult_51_years	chr5	148319974	148319975	148319974	+	RAMPAGE_only	8	8	11	0.635188	2.721928	chr5	148319975	148321427	LINE|L1|L1P1	+	chr5	148321202	148339722	SPINK9|ENST00000511717.6	+	148321202,148323678,148336421,148338477,148339666	148321400,148323868,148336453,148338605,148339722	0.909091
adrenal_gland_female_adult_51_years	chr11	65444367	65444440	65444409	+	RAMPAGE_only	10	11	44	2.540751	4.897081	chr11	65444390	65444497	SINE|MIR|MIR1_Amn	+	chr11	65437261	65445529	STRG.23403.6	+	65437261,65444283	65444263,65445529	0.977273
adrenal_gland_female_adult_51_years	chr19	49539150	49539151	49539150	+	RAMPAGE_only	23	25	29	1.674586	4.280226	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49542601	49543633	RCN3|ENST00000593483.1	+	49542601,49543105	49542668,49543633	0.517241
adrenal_gland_female_adult_51_years	chr1	155478037	155478044	155478043	-	RAMPAGE_only	7	7	13	0.750676	3.026987	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
adrenal_gland_female_adult_51_years	chr19	39839757	39839758	39839757	-	High_confidence	6	6	6	0.346466	2.584963	chr19	39839431	39839808	LINE|L2|L2a	-	chr19	39834457	39840441	FBL|ENST00000595545.5	-	39834457,39836555,39837710,39839034,39840232,39840413	39834813,39836668,39837843,39839205,39840327,39840441	1.000000
adrenal_gland_female_adult_51_years	chr9	111783889	111783960	111783923	-	High_confidence	13	22	91	5.254735	5.311159	chr9	111783697	111784151	LTR|ERVL|MER70A	-	chr9	111758771	111784045	STRG.19976.1	-	111758771,111775790,111780929,111783798	111758848,111775975,111781017,111784045	0.703297
adrenal_gland_female_adult_51_years	chr11	125895226	125895228	125895227	-	RAMPAGE_only	4	6	9	0.519699	2.500000	chr11	125895047	125895200	SINE|Alu|AluSc8	-	chr11	125893484	125896330	PUS3|ENST00000530811.5	-	125893484,125895223,125895906	125894286,125895789,125896330	0.888889
adrenal_gland_female_adult_51_years	chr5	150640347	150640359	150640347	+	High_confidence	11	11	21	1.212631	3.558519	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	1.000000
adrenal_gland_female_adult_51_years	chr17	4720029	4720058	4720046	+	RAMPAGE_only	7	7	40	2.309773	4.448861	chr17	4719939	4720058	LINE|L2|L2a	-	chr17	4715588	4721138	ARRB2|ENST00000571206.1	+	4715588,4716146,4716411,4717216,4717684,4717887,4718260,4718611,4719282,4720215,4720392,4720585,4720945	4716033,4716191,4716608,4717276,4717752,4718023,4718345,4718684,4719420,4720299,4720472,4720640,4721138	0.900000
adrenal_gland_female_adult_51_years	chr12	91179462	91179526	91179462	-	High_confidence	1866	1919	5342	308.470239	7.468241	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.915949
adrenal_gland_female_adult_51_years	chr5	50443255	50443258	50443257	-	High_confidence	4	7	9	0.519699	3.000000	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.888889
adrenal_gland_female_adult_51_years	chr4	185933369	185933447	185933446	-	High_confidence	6	6	33	1.905563	4.038910	chr4	185933361	185933839	LTR|ERVL-MaLR|MLT1C	-	chr4	185775280	185933370	SORBS2|ENST00000488562.1	-	185775280,185894296,185932935	185775366,185894373,185933370	0.787879
adrenal_gland_female_adult_51_years	chr16	29963549	29963572	29963560	+	High_confidence	5	6	12	0.692932	3.277613	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.500000
adrenal_gland_female_adult_51_years	chr1	179294641	179294642	179294641	+	High_confidence	8	8	12	0.692932	3.277613	chr1	179294538	179294832	SINE|Alu|AluSz	-	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.833333
adrenal_gland_female_adult_51_years	chr2	6866552	6866553	6866552	-	High_confidence	5	5	8	0.461955	3.000000	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.750000
adrenal_gland_female_adult_51_years	chr15	61857527	61857590	61857527	-	RAMPAGE_only	2	2	13	0.750676	3.418296	chr15	61857144	61857545	LINE|L2|L2c	-	chr15	61852403	61864760	VPS13C|ENST00000560637.5	-	61852403,61854870,61856285,61863439	61854558,61854954,61856409,61864760	0.923077
adrenal_gland_female_adult_51_years	chr3	135965670	135965749	135965723	+	High_confidence	25	37	152	8.777139	5.951668	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.960526
adrenal_gland_female_adult_51_years	chr5	172958875	172958925	172958918	+	High_confidence	20	20	83	4.792780	4.667779	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.987952
adrenal_gland_female_adult_51_years	chr7	88277563	88277721	88277720	-	RAMPAGE_only	13	13	66	3.811126	5.152115	chr7	88277593	88277887	SINE|Alu|AluSz6	+	chr7	88271207	88306880	STRG.16071.1	-	88271207,88280914,88282640,88283813,88290915,88306791	88279628,88281079,88283168,88284271,88291014,88306880	0.969697
adrenal_gland_female_adult_51_years	chr16	21637128	21637141	21637128	-	High_confidence	19	20	61	3.522404	4.818044	chr16	21636946	21637915	LTR|ERV1|LTR12D	-	chr16	21629856	21637059	STRG.30392.1	-	21629856,21636883	21630749,21637059	0.901639
adrenal_gland_female_adult_51_years	chr13	22040971	22040972	22040971	+	High_confidence	7	8	9	0.519699	2.750000	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.666667
adrenal_gland_female_adult_51_years	chr11	110406240	110406308	110406240	+	RAMPAGE_only	5	8	30	1.732330	4.573557	chr11	110404839	110406480	LTR|ERV1|HERV9-int	+	chr11	110355198	110407676	STRG.24167.1	+	110355198,110366360,110388955,110406243	110355518,110366534,110389077,110407676	1.000000
adrenal_gland_female_adult_51_years	chr14	94109676	94109679	94109676	+	RAMPAGE_only	7	7	12	0.692932	3.251629	chr14	94109433	94109807	LTR|ERV1|MER65B	-	chr14	94110732	94116698	IFI27|ENST00000616764.4	+	94110732,94110925,94111624,94114850,94115780,94116441	94110797,94110978,94111773,94114880,94115942,94116698	0.583333
adrenal_gland_female_adult_51_years	chr5	149887968	149887983	149887982	-	RAMPAGE_only	3	5	14	0.808421	2.968919	chr5	149887556	149888026	LTR|ERV1|LTR46	+	chr5	149858269	149884830	STRG.12276.1	-	149858269,149863118,149866169,149867724,149868094,149883428,149884478,149884779	149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884830	0.571429
adrenal_gland_female_adult_51_years	chr1	225825476	225825497	225825486	+	High_confidence	12	12	25	1.443608	3.943465	chr1	225825407	225825487	LINE|CR1|L3b	+	chr1	225825353	225845563	EPHX1|ENST00000366837.5	+	225825353,225828724,225831778,225838653,225839216,225839828,225842365,225844497,225845145	225825544,225828912,225831959,225838881,225839346,225840037,225842474,225844623,225845563	1.000000
adrenal_gland_female_adult_51_years	chr1	196715616	196715687	196715659	+	RAMPAGE_only	5	5	37	2.136540	4.149473	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	1.000000
adrenal_gland_female_adult_51_years	chr7	100035606	100035609	100035608	+	RAMPAGE_only	4	8	10	0.577443	2.725481	chr7	100035147	100035840	LINE|RTE-BovB|MamRTE1	+	chr7	100023407	100041688	ZKSCAN1|ENST00000620510.1	+	100023407,100023551,100024153,100029860,100030248,100033304	100023461,100023932,100024307,100029952,100030375,100041688	0.900000
adrenal_gland_female_adult_51_years	chr7	11193311	11193341	11193340	+	High_confidence	4	6	11	0.635188	3.321928	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.545455
adrenal_gland_female_adult_51_years	chr3	31423620	31423638	31423620	-	High_confidence	2	2	7	0.404210	2.807355	chr3	31423581	31424079	LTR|ERVL-MaLR|MLT1H	-	chr3	31296350	31423631	STRG.7112.1	-	31296350,31308846,31423167	31296558,31308926,31423631	0.857143
adrenal_gland_female_adult_51_years	chr7	150330349	150330361	150330349	+	High_confidence	2	2	8	0.461955	2.807355	chr7	150329923	150330471	DNA|hAT-Ac|OldhAT1	+	chr7	150329848	150332721	ZBED6CL|NM_138434.2	+	150329848	150332721	0.875000
adrenal_gland_female_adult_51_years	chr17	47067498	47067518	47067498	-	High_confidence	401	433	1446	83.498309	5.778473	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.957815
adrenal_gland_female_adult_51_years	chr7	74568837	74568872	74568841	+	RAMPAGE_only	16	16	77	4.446314	5.353297	chr7	74568749	74569022	LINE|L2|L2	-	chr7	74545761	74601106	GTF2IRD1|ENST00000470715.1	+	74545761,74555173,74555437,74557638,74558860,74559626,74589850,74590824,74595013,74601043	74545809,74555223,74555494,74557722,74559044,74559655,74589928,74591017,74595051,74601106	0.519481
adrenal_gland_female_adult_51_years	chr5	133089588	133089693	133089676	+	RAMPAGE_only	28	35	111	6.409621	5.918214	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.990991
adrenal_gland_female_adult_51_years	chr1	167937108	167937153	167937152	+	High_confidence	4	4	10	0.577443	2.846439	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167937152	167993330	DCAF6|ENST00000455334.5	+	167937152,167951799,167966628,167974829,167987494,167991203,167993225	167937252,167951861,167966721,167975015,167987608,167991339,167993330	0.900000
adrenal_gland_female_adult_51_years	chr1	179322445	179322457	179322456	+	RAMPAGE_only	3	4	14	0.808421	3.182006	chr1	179322375	179322519	SINE|Alu|AluSx3	-	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.785714
adrenal_gland_female_adult_51_years	chr4	169697625	169697626	169697625	+	RAMPAGE_only	11	11	12	0.692932	3.095795	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169662721	169723183	CLCN3|ENST00000504131.6	+	169662721,169663113,169663526,169680049,169687657,169689042,169690529,169692113,169695611,169697188,169703997,169706867,169713078,169719906	169662738,169663114,169663617,169680207,169687757,169689230,169690652,169692320,169695692,169697734,169704184,169707266,169713295,169723183	0.916667
adrenal_gland_female_adult_51_years	chr19	11356870	11356874	11356871	+	High_confidence	4	6	12	0.692932	3.251629	chr19	11356842	11356927	SINE|MIR|MIRc	+	chr19	11357695	11359894	PLPPR2|ENST00000588196.1	+	11357695,11359531	11357739,11359894	0.666667
adrenal_gland_female_adult_51_years	chr11	111097319	111097352	111097343	-	High_confidence	5	6	27	1.559097	3.686419	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.962963
adrenal_gland_female_adult_51_years	chr14	100829576	100829611	100829610	+	High_confidence	2	2	8	0.461955	2.750000	chr14	100829596	100829639	LINE|L2|L2b	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	1.000000
adrenal_gland_female_adult_51_years	chr1	25820171	25820239	25820192	+	High_confidence	19	21	108	6.236388	5.522989	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.814815
adrenal_gland_female_adult_51_years	chr22	18149848	18149869	18149868	+	High_confidence	29	29	85	4.908269	4.845617	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.976471
adrenal_gland_female_adult_51_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	84	85	85	4.908269	5.451608	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.988235
adrenal_gland_female_adult_51_years	chr3	188884232	188884256	188884232	+	RAMPAGE_only	2	2	9	0.519699	2.725481	chr3	188884141	188884305	SINE|MIR|MIRc	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
adrenal_gland_female_adult_51_years	chr11	117836292	117836298	117836297	+	High_confidence	10	10	20	1.154887	3.932138	chr11	117836254	117836523	SINE|Alu|AluJb	-	chr11	117836307	117837857	STRG.24305.1	+	117836307,117837167	117836502,117837857	0.800000
adrenal_gland_female_adult_51_years	chr7	101318959	101319015	101318959	-	RAMPAGE_only	3	3	20	1.154887	3.146439	chr7	101318630	101318917	SINE|Alu|AluJo	-	chr7	101314752	101321764	IFT22|ENST00000498704.6	-	101314752,101316339,101318123,101321670	101315282,101316542,101318213,101321764	1.000000
adrenal_gland_female_adult_51_years	chr7	134432378	134432453	134432378	-	High_confidence	7	7	36	2.078796	4.793345	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.833333
adrenal_gland_female_adult_51_years	chr18	46087026	46087065	46087031	-	High_confidence	3	3	17	0.981654	3.875000	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.764706
adrenal_gland_female_adult_51_years	chr17	19386334	19386335	19386334	-	High_confidence	14	17	18	1.039398	3.337175	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.944444
adrenal_gland_female_adult_51_years	chr12	113334627	113334637	113334636	-	High_confidence	4	4	8	0.461955	2.750000	chr12	113334544	113334646	SINE|MIR|MIRb	+	chr12	113320849	113334613	SLC8B1|ENST00000552613.1	-	113320849,113321055,113321195,113332748,113334442	113320907,113321108,113321348,113332960,113334613	1.000000
adrenal_gland_female_adult_51_years	chr14	100829453	100829478	100829477	+	High_confidence	3	5	14	0.808421	3.521641	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	1.000000
adrenal_gland_female_adult_51_years	chr2	182928788	182928844	182928788	-	RAMPAGE_only	8	11	26	1.501353	3.697797	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.730769
adrenal_gland_female_adult_51_years	chr7	155952039	155952100	155952039	+	High_confidence	11	11	41	2.367518	4.611949	chr7	155951984	155952147	SINE|MIR|MIR3	-	chr7	155952306	155966057	STRG.17184.2	+	155952306,155964451	155952408,155966057	0.682927
adrenal_gland_female_adult_51_years	chr8	39083033	39083067	39083066	+	RAMPAGE_only	11	18	33	1.905563	4.256515	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.848485
adrenal_gland_female_adult_51_years	chr3	143824526	143824547	143824526	-	RAMPAGE_only	8	8	19	1.097142	3.614369	chr3	143824344	143824714	LINE|L2|L2a	+	chr3	143693209	143848485	SLC9A9|ENST00000474727.2	-	143693209,143795000,143796825,143848147	143693307,143795077,143796903,143848485	0.578947
adrenal_gland_female_adult_51_years	chr22	50330772	50330774	50330772	+	RAMPAGE_only	3	6	8	0.461955	2.750000	chr22	50330753	50331068	LTR|ERVL-MaLR|MLT1D	+	chr22	50343303	50445090	PPP6R2|ENST00000359139.7	+	50343303,50372019,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439697,50439960,50440821,50443865,50444202	50343550,50372150,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50445090	0.750000
adrenal_gland_female_adult_51_years	chr3	15341379	15341380	15341379	-	High_confidence	6	7	9	0.519699	3.169925	chr3	15341159	15341407	LINE|L2|L2a	+	chr3	15255649	15341368	SH3BP5|ENST00000408919.7	-	15255649,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341368	1.000000
adrenal_gland_female_adult_51_years	chr2	42639113	42639135	42639113	+	RAMPAGE_only	11	12	34	1.963307	4.572469	chr2	42639051	42639230	SINE|Alu|AluSx	-	chr2	42568745	42753399	MTA3|ENST00000405094.1	+	42568745,42570436,42579106,42609457,42640172,42644126,42656199,42659762,42682400,42695764,42697775,42704193,42707902,42708873,42718987,42722888,42753373	42568773,42570504,42579200,42609584,42640236,42644244,42656302,42659862,42682589,42695839,42697834,42704318,42708054,42709096,42719074,42723035,42753399	0.941176
adrenal_gland_female_adult_51_years	chr4	39548175	39548194	39548193	-	RAMPAGE_only	20	20	33	1.905563	4.498940	chr4	39547905	39548204	SINE|Alu|AluSp	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.969697
adrenal_gland_female_adult_51_years	chr15	65577067	65577306	65577190	+	RAMPAGE_only	34	36	231	13.338941	5.650690	chr15	65577153	65577426	SINE|Alu|AluJr	+	chr15	65530488	65578355	HACD3|NM_016395.2	+	65530488,65551675,65554886,65556738,65558679,65562773,65564214,65570090,65571547,65572234,65576302	65530718,65551718,65554960,65556903,65558731,65562884,65564342,65570203,65571654,65572366,65578355	0.995671
adrenal_gland_female_adult_51_years	chr1	212792464	212792473	212792464	-	High_confidence	4	4	10	0.577443	2.921928	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.900000
adrenal_gland_female_adult_51_years	chr2	60516688	60516689	60516688	-	RAMPAGE_only	8	8	8	0.461955	2.750000	chr2	60516599	60517135	LINE|CR1|Plat_L3	+	chr2	60461908	60527855	BCL11A|ENST00000645455.1	-	60461908,60468731,60527654	60462424,60468833,60527855	0.875000
adrenal_gland_female_adult_51_years	chr1	51403420	51403485	51403420	-	RAMPAGE_only	4	6	38	2.194285	3.730855	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	1.000000
adrenal_gland_female_adult_51_years	chr19	47227183	47227226	47227216	-	High_confidence	3	3	14	0.808421	3.521641	chr19	47227045	47227213	SINE|MIR|MIR1_Amn	-	chr19	47221644	47227189	BBC3|ENST00000598636.1	-	47221644,47226563	47221918,47227189	1.000000
adrenal_gland_female_adult_51_years	chr19	51350356	51350380	51350356	-	RAMPAGE_only	10	10	33	1.905563	3.557931	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.939394
adrenal_gland_female_adult_51_years	chr17	43508392	43508427	43508412	+	RAMPAGE_only	2	2	11	0.635188	2.921928	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	0.909091
adrenal_gland_female_adult_51_years	chr5	149887611	149887618	149887616	-	RAMPAGE_only	16	32	50	2.887217	4.679708	chr5	149887556	149888026	LTR|ERV1|LTR46	+	chr5	149858269	149884830	STRG.12276.1	-	149858269,149863118,149866169,149867724,149868094,149883428,149884478,149884779	149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884830	0.720000
adrenal_gland_female_adult_51_years	chr20	44532568	44532570	44532569	+	High_confidence	48	53	70	4.042103	5.506242	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.871429
adrenal_gland_female_adult_51_years	chr11	112176365	112176373	112176365	+	High_confidence	44	50	135	7.795485	5.550064	chr11	112176309	112176508	LINE|L2|L2c	-	chr11	112176365	112218929	BCO2|NM_001256397.1	+	112176365,112179277,112193473,112193878,112194652,112199698,112200612,112202022,112213723,112214761,112216219,112217760	112176458,112179482,112193697,112193994,112194755,112199827,112200773,112202190,112213861,112214926,112216330,112218929	0.948148
adrenal_gland_female_adult_51_years	chr2	37365962	37365967	37365966	+	RAMPAGE_only	53	55	80	4.619547	5.310309	chr2	37365632	37366257	LINE|L2|L2	-	chr2	37367122	37373030	QPCT|ENST00000469098.1	+	37367122,37369684,37372355,37372681	37367408,37369784,37372472,37373030	0.737500
adrenal_gland_female_adult_51_years	chr5	173809081	173809138	173809119	-	High_confidence	3	3	20	1.154887	3.511085	chr5	173808847	173809163	SINE|Alu|AluJb	+	chr5	173790808	173809039	LINC01485|ENST00000518675.1	-	173790808,173808729	173790870,173809039	0.650000
adrenal_gland_female_adult_51_years	chr12	109179279	109179280	109179279	+	RAMPAGE_only	9	9	11	0.635188	2.846439	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109154681	109191918	STRG.26098.5	+	109154681,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846	109154940,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191918	0.909091
adrenal_gland_female_adult_51_years	chr6	143828749	143828802	143828801	+	RAMPAGE_only	12	19	57	3.291427	4.874057	chr6	143828714	143828929	DNA|hAT-Charlie|MER20B	-	chr6	143677964	143831185	PHACTR2|NM_001100164.1	+	143677964,143712015,143748984,143753753,143760400,143765260,143772257,143774058,143777327,143783218,143788772,143807056,143823673	143678209,143712183,143749065,143753912,143760640,143765798,143772457,143774215,143777383,143783280,143788910,143807133,143831185	0.982456
adrenal_gland_female_adult_51_years	chr2	47369479	47369492	47369479	+	High_confidence	34	34	136	7.853230	6.208672	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369474	47375254	EPCAM|ENST00000474691.1	+	47369474,47373462,47375233	47369581,47374048,47375254	0.507353
adrenal_gland_female_adult_51_years	chr5	151669663	151669686	151669663	-	RAMPAGE_only	5	5	25	1.443608	4.243856	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	1.000000
adrenal_gland_female_adult_51_years	chr3	151539185	151539210	151539185	-	RAMPAGE_only	3	3	9	0.519699	2.725481	chr3	151538962	151539152	LTR|ERVL|LTR79	-	chr3	151444943	151461050	STRG.8702.4	-	151444943,151453383,151457025,151458515,151460945	151449265,151453774,151457155,151458710,151461050	1.000000
adrenal_gland_female_adult_51_years	chr19	3062922	3062983	3062922	-	High_confidence	50	56	150	8.661650	5.549232	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.986667
adrenal_gland_female_adult_51_years	chr4	158174139	158174145	158174139	-	RAMPAGE_only	9	12	27	1.559097	4.286790	chr4	158173970	158174146	SINE|MIR|MIRb	+	chr4	158124473	158173050	FAM198B|ENST00000585682.5	-	158124473,158130785,158155610,158170465,158172867	158127614,158131012,158155825,158171599,158173050	0.888889
adrenal_gland_female_adult_51_years	chr4	185620099	185620144	185620108	-	RAMPAGE_only	15	17	111	6.409621	4.673781	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.882883
adrenal_gland_female_adult_51_years	chr1	1989109	1989143	1989142	-	RAMPAGE_only	7	7	28	1.616841	4.450212	chr1	1989142	1989459	LTR|ERVL|LTR18B	+	chr1	1987961	1990929	CFAP74|ENST00000378590.4	-	1987961,1988511,1988888,1990889	1988133,1988655,1988973,1990929	0.857143
adrenal_gland_female_adult_51_years	chr9	128625577	128625621	128625587	+	RAMPAGE_only	7	7	32	1.847819	3.764735	chr9	128625247	128625624	LINE|L2|L2c	-	chr9	128566740	128633335	SPTAN1|ENST00000630866.1	+	128566740,128568771,128574674,128575198,128576822,128577128,128577351,128578109,128579636,128580921,128581781,128582478,128582693,128583076,128583787,128584281,128584720,128585747,128587605,128588808,128591476,128592982,128594174,128598399,128598962,128600079,128603542,128604325,128605033,128605295,128607603,128607851,128608129,128608873,128609121,128609650,128611713,128612108,128613380,128615631,128617639,128617986,128618870,128621157,128624327,128625102,128625768,128626390,128627385,128627924,128629124,128630320,128632126,128632430,128632571,128632807,128633208	128566977,128568897,128574815,128575345,128576956,128577273,128577506,128578245,128579738,128581059,128581892,128582556,128582849,128583281,128583969,128584525,128584843,128585965,128587698,128588943,128591625,128593042,128594373,128598504,128598986,128600115,128603590,128604417,128605178,128605477,128607703,128608049,128608276,128608977,128609284,128609665,128611845,128612246,128613485,128615840,128617760,128618108,128619003,128621256,128624487,128625179,128625978,128626687,128627498,128627942,128629187,128630375,128632323,128632484,128632718,128632955,128633335	0.906250
adrenal_gland_female_adult_51_years	chr15	34988756	34988785	34988767	-	High_confidence	8	9	29	1.674586	4.307355	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.862069
adrenal_gland_female_adult_51_years	chr4	184339459	184339460	184339459	-	RAMPAGE_only	12	12	18	1.039398	3.503258	chr4	184339404	184339941	LTR|ERV1|MER41B	-	chr4	184334290	184347904	STRG.10735.1	-	184334290,184341952,184347712	184334419,184342053,184347904	0.666667
adrenal_gland_female_adult_51_years	chr1	184483148	184483175	184483148	+	RAMPAGE_only	2	2	8	0.461955	2.500000	chr1	184483121	184483214	LINE|CR1|L3	-	chr1	184477384	184629020	STRG.2931.2	+	184477384,184507587,184590738,184598400,184619517,184623428	184477603,184507682,184590815,184598461,184623392,184629020	1.000000
adrenal_gland_female_adult_51_years	chr15	40418695	40418790	40418744	+	RAMPAGE_only	6	10	57	3.291427	3.375245	chr15	40418750	40418809	DNA|TcMar-Tigger|Tigger4b	+	chr15	40415145	40419157	IVD|ENST00000497816.1	+	40415145,40416077,40416289,40418129	40415482,40416182,40416362,40419157	0.807018
adrenal_gland_female_adult_51_years	chr9	39809852	39809876	39809858	-	High_confidence	9	15	45	2.598495	4.786503	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803599	39810013	STRG.19187.2	-	39803599,39809485,39809730	39803859,39809615,39810013	0.800000
adrenal_gland_female_adult_51_years	chr6	31400605	31400620	31400605	-	High_confidence	10	10	20	1.154887	3.684184	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31394279	31400481	STRG.13144.1	-	31394279,31400053	31395217,31400481	0.900000
adrenal_gland_female_adult_51_years	chr12	53251259	53251307	53251259	+	High_confidence	2	2	15	0.866165	3.521641	chr12	53251157	53251415	LINE|L2|L2a	-	chr12	53251250	53251897	MFSD5|ENST00000546655.1	+	53251250,53251704	53251624,53251897	0.533333
adrenal_gland_female_adult_51_years	chr3	14525856	14525919	14525856	-	High_confidence	3	3	16	0.923909	3.452820	chr3	14525692	14525809	SINE|MIR|MIRc	-	chr3	14520691	14525983	GRIP2|ENST00000422481.5	-	14520691,14525436,14525850	14524538,14525572,14525983	0.875000
adrenal_gland_female_adult_51_years	chr5	151182241	151182264	151182241	-	RAMPAGE_only	3	5	14	0.808421	3.378783	chr5	151182086	151182249	SINE|MIR|MIRc	+	chr5	151181234	151185215	CCDC69|ENST00000519448.1	-	151181234,151184343	151183614,151185215	0.928571
adrenal_gland_female_adult_51_years	chr10	114698843	114698849	114698843	-	High_confidence	44	47	86	4.966013	5.741686	chr10	114698749	114699028	LINE|L1|HAL1	+	chr10	114436037	114698965	STRG.22217.5	-	114436037,114437843,114439175,114440081,114441016,114441721,114444028,114445311,114447879,114451623,114453378,114465697,114468180,114472976,114473878,114487957,114491790,114545004,114547649,114571296,114575415,114601826,114698805	114436373,114437924,114439250,114440089,114441077,114441786,114444134,114445403,114448020,114451671,114453483,114465827,114468216,114473132,114473956,114488016,114491878,114545098,114547776,114571406,114575599,114601961,114698965	0.895349
adrenal_gland_female_adult_51_years	chr1	171517792	171517814	171517813	+	RAMPAGE_only	13	15	21	1.212631	3.630413	chr1	171517862	171517949	DNA|hAT-Charlie|Charlie4a	+	chr1	171523348	171524870	PRRC2C|ENST00000470689.1	+	171523348,171524820	171523522,171524870	0.523810
adrenal_gland_female_adult_51_years	chr2	110118119	110118147	110118141	-	RAMPAGE_only	9	12	34	1.963307	3.645711	chr2	110117625	110118184	LINE|L1|L1MD2	-	chr2	110083869	110116566	MALL|NM_005434.4	-	110083869,110087571,110091602,110115687	110085757,110087697,110091770,110116566	1.000000
adrenal_gland_female_adult_51_years	chr10	93431448	93431461	93431448	-	RAMPAGE_only	5	5	9	0.519699	2.503258	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.777778
adrenal_gland_female_adult_51_years	chr17	42403692	42403715	42403692	-	RAMPAGE_only	8	8	18	1.039398	3.381580	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	0.944444
adrenal_gland_female_adult_51_years	chr2	46903267	46903357	46903356	-	RAMPAGE_only	48	55	137	7.910974	5.090205	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.992701
adrenal_gland_female_adult_51_years	chr22	39021141	39021182	39021141	+	High_confidence	4	4	37	2.136540	4.175273	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
adrenal_gland_female_adult_51_years	chr19	9140390	9140428	9140393	+	High_confidence	36	36	128	7.391275	5.899767	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.812500
adrenal_gland_female_adult_51_years	chr11	65181222	65181373	65181222	+	High_confidence	19	19	199	11.491123	5.939588	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	1.000000
adrenal_gland_female_adult_51_years	chr3	9792224	9792244	9792243	-	High_confidence	3	3	7	0.404210	2.807355	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.571429
adrenal_gland_female_adult_51_years	chr4	2867795	2867851	2867835	+	High_confidence	56	58	350	20.210517	6.539025	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.997143
adrenal_gland_female_adult_51_years	chr7	89884714	89884731	89884730	-	RAMPAGE_only	3	3	6	0.346466	2.584963	chr7	89884667	89884870	SINE|MIR|MIRb	+	chr7	89882352	90211635	STEAP2-AS1|ENST00000478318.6	-	89882352,90209850,90211299	89882555,90209938,90211635	0.500000
adrenal_gland_female_adult_51_years	chr1	78620056	78620057	78620056	+	High_confidence	11	13	13	0.750676	3.238901	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78619999	78643309	STRG.1511.1	+	78619999,78620456,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620058,78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78643309	0.923077
adrenal_gland_female_adult_51_years	chr16	87381469	87381509	87381508	-	RAMPAGE_only	15	17	39	2.252029	4.506751	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87326986	87383757	FBXO31|ENST00000311635.11	-	87326986,87333885,87335303,87336154,87342876,87343597,87347173,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87360366,87383757	0.794872
adrenal_gland_female_adult_51_years	chr11	65439034	65439100	65439034	+	RAMPAGE_only	10	11	35	2.021052	4.479143	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65437261	65445529	STRG.23403.6	+	65437261,65444283	65444263,65445529	1.000000
adrenal_gland_female_adult_51_years	chr17	75498186	75498210	75498186	+	High_confidence	3	4	9	0.519699	2.750000	chr17	75498201	75498275	LINE|L2|L2-1_Crp	+	chr17	75498216	75498814	TMEM94|ENST00000577194.1	+	75498216,75498443	75498323,75498814	0.777778
adrenal_gland_female_adult_51_years	chr19	10825149	10825221	10825220	+	RAMPAGE_only	8	9	45	2.598495	4.472424	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	0.933333
adrenal_gland_female_adult_51_years	chr10	78977915	78977963	78977923	-	RAMPAGE_only	5	5	25	1.443608	4.213661	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78962394	ZMIZ1-AS1|ENST00000428862.5	-	78943327,78945911,78960504,78961253	78944747,78945989,78960716,78962394	0.840000
adrenal_gland_female_adult_51_years	chr11	67887541	67887568	67887541	+	RAMPAGE_only	12	16	52	3.002705	4.481857	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.865385
adrenal_gland_female_adult_51_years	chr20	56367400	56367722	56367400	+	RAMPAGE_only	19	19	212	12.241799	5.529799	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	0.985849
adrenal_gland_female_adult_51_years	chr2	228483350	228483351	228483350	-	RAMPAGE_only	9	10	14	0.808421	3.378783	chr2	228483264	228483837	DNA|hAT-Charlie|Charlie1a	+	chr2	228482172	228611440	STRG.6531.1	-	228482172,228483417,228488682,228611251	228483244,228483498,228488793,228611440	0.928571
adrenal_gland_female_adult_51_years	chr12	7502483	7502525	7502503	-	High_confidence	19	19	57	3.291427	5.174824	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502711	STRG.24746.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7495080,7496812,7498867,7501138,7502477	7471397,7479996,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7488087,7495401,7497133,7499188,7501462,7502711	1.000000
adrenal_gland_female_adult_51_years	chr1	89134845	89134846	89134845	-	RAMPAGE_only	6	6	9	0.519699	2.947703	chr1	89133498	89139088	LINE|L1|L1PA15	+	chr1	89131750	89176040	GBP7|ENST00000294671.2	-	89131750,89133257,89141545,89147566,89149291,89150329,89152267,89152667,89164730,89171745,89175920	89132403,89133451,89141648,89147779,89149572,89150575,89152464,89152777,89164858,89171954,89176040	1.000000
adrenal_gland_female_adult_51_years	chr1	174874418	174874439	174874418	+	High_confidence	8	11	22	1.270375	4.021928	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.590909
adrenal_gland_female_adult_51_years	chr10	27121396	27121432	27121396	-	RAMPAGE_only	2	2	9	0.519699	2.750000	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	0.888889
adrenal_gland_female_adult_51_years	chr2	159428314	159428359	159428358	-	RAMPAGE_only	10	13	47	2.713984	5.182040	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159400598	159419867	BAZ2B|ENST00000482501.5	-	159400598,159404848,159405021,159412334,159419779	159400664,159404910,159405114,159412545,159419867	0.553191
adrenal_gland_female_adult_51_years	chr5	997305	997314	997305	-	High_confidence	8	8	29	1.674586	3.824539	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.931034
adrenal_gland_female_adult_51_years	chr19	44744995	44744996	44744995	+	RAMPAGE_only	6	6	9	0.519699	2.503258	chr19	44744995	44745093	SINE|MIR|MIR3	-	chr19	44747835	44749004	BCL3|ENST00000487394.1	+	44747835,44748694	44748128,44749004	0.555556
adrenal_gland_female_adult_51_years	chr7	150330116	150330149	150330116	+	High_confidence	14	16	37	2.136540	4.702565	chr7	150329923	150330471	DNA|hAT-Ac|OldhAT1	+	chr7	150329848	150332721	ZBED6CL|NM_138434.2	+	150329848	150332721	1.000000
adrenal_gland_female_adult_51_years	chr15	74361111	74361148	74361111	+	High_confidence	3	3	12	0.692932	3.459432	chr15	74360994	74361387	LTR|ERV1|MER41-int	+	chr15	74361131	74362041	STRG.29500.1	+	74361131,74361513	74361186,74362041	0.750000
adrenal_gland_female_adult_51_years	chr3	52615426	52615445	52615426	-	High_confidence	7	7	13	0.750676	3.180833	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	1.000000
adrenal_gland_female_adult_51_years	chr9	19126400	19126425	19126424	-	RAMPAGE_only	4	4	8	0.461955	2.750000	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19115769	19127576	PLIN2|ENST00000276914.6	-	19115769,19118320,19119649,19120879,19123564,19126113,19126396,19127418	19116649,19118455,19119831,19121165,19123647,19126309,19126448,19127576	1.000000
adrenal_gland_female_adult_51_years	chr2	27910837	27910838	27910837	+	High_confidence	28	29	30	1.732330	4.073330	chr2	27910851	27911226	LTR|ERVL-MaLR|THE1C	+	chr2	27910940	28338901	STRG.4047.8	+	27910940,27929831,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28327273,28338449	27911143,27929908,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28327447,28338901	0.966667
adrenal_gland_female_adult_51_years	chr3	32703762	32703789	32703788	+	High_confidence	11	11	20	1.154887	3.826875	chr3	32703312	32703822	DNA|TcMar-Tigger|MER44B	-	chr3	32703790	32713349	CNOT10|ENST00000485136.5	+	32703790,32704810,32708669,32713226	32703962,32704972,32708820,32713349	0.900000
adrenal_gland_female_adult_51_years	chr4	4477596	4477601	4477596	-	RAMPAGE_only	4	4	11	0.635188	3.321928	chr4	4477450	4477692	SINE|MIR|MIR	-	chr4	4425160	4461954	STX18|ENST00000512195.5	-	4425160,4434769,4438393,4457190,4457422,4459371,4461905	4425222,4434858,4438509,4457257,4457500,4459487,4461954	0.909091
adrenal_gland_female_adult_51_years	chr14	94581619	94581629	94581628	+	High_confidence	13	13	27	1.559097	3.893661	chr14	94581654	94581760	SINE|MIR|MIRb	+	chr14	94581614	94593115	SERPINA5|ENST00000554276.1	+	94581614,94587345,94590040,94590748,94592056	94581710,94587981,94590311,94590896,94593115	0.925926
adrenal_gland_female_adult_51_years	chr11	110248000	110248015	110248014	-	RAMPAGE_only	10	10	17	0.981654	3.337175	chr11	110247890	110248238	LINE|L1|L1PB2	+	chr11	110195589	110296504	RDX|ENST00000646663.1	-	110195589,110199580,110200277,110231872,110233236,110236098,110237491,110247702,110253945,110255288,110257766,110258105,110263959,110264778,110272535,110279680,110296466	110196165,110199678,110200386,110232033,110233479,110236191,110237652,110247833,110254109,110255385,110257913,110258189,110264234,110264874,110272619,110279756,110296504	1.000000
adrenal_gland_female_adult_51_years	chr10	59806928	59806948	59806940	-	RAMPAGE_only	2	2	7	0.404210	2.584963	chr10	59806852	59806982	LINE|Penelope|Penelope1_Vert	+	chr10	59791751	59805576	CCDC6|ENST00000491922.1	-	59791751,59794472,59804419	59793111,59794597,59805576	0.857143
adrenal_gland_female_adult_51_years	chr2	100291160	100291161	100291160	-	RAMPAGE_only	10	11	11	0.635188	2.721928	chr2	100291129	100291287	LINE|L1|L1MCc	+	chr2	100283541	100309505	LONRF2|ENST00000409647.1	-	100283541,100286913,100290257,100294228,100295431,100298835,100299225,100299716,100300643,100302920,100309106,100309484	100284492,100287063,100290420,100294387,100295553,100298950,100299319,100299918,100300787,100303043,100309225,100309505	0.818182
adrenal_gland_female_adult_51_years	chr10	79446854	79446881	79446860	-	RAMPAGE_only	9	9	34	1.963307	4.066677	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.941176
adrenal_gland_female_adult_51_years	chr22	30611009	30611052	30611051	+	RAMPAGE_only	3	3	13	0.750676	2.855389	chr22	30611097	30611237	SINE|MIR|MIR3	+	chr22	30607203	30627060	TCN2|ENST00000407817.3	+	30607203,30610870,30612872,30614348,30615300,30615600,30617329,30622967,30626459	30607395,30611063,30612961,30614501,30615473,30615787,30617495,30623083,30627060	0.923077
adrenal_gland_female_adult_51_years	chr12	81255570	81255750	81255749	+	RAMPAGE_only	5	7	78	4.504058	4.968516	chr12	81255550	81255819	SINE|Alu|AluSx1	+	chr12	81077210	81261205	ACSS3|ENST00000548058.5	+	81077210,81109559,81134815,81139130,81143106,81151843,81152000,81174787,81199340,81216900,81220012,81231056,81233348,81253306,81253494,81254856	81078431,81109704,81135004,81139265,81143247,81151924,81152096,81174939,81199444,81216996,81220076,81231138,81233471,81253406,81253670,81261205	0.974359
adrenal_gland_female_adult_51_years	chr17	2667194	2667196	2667194	+	High_confidence	3	7	9	0.519699	2.947703	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	1.000000
adrenal_gland_female_adult_51_years	chr10	133369995	133370021	133370020	-	RAMPAGE_only	15	15	54	3.118194	5.095661	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.981481
adrenal_gland_female_adult_51_years	chr5	109383424	109383434	109383433	-	High_confidence	3	5	12	0.692932	2.663533	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.916667
adrenal_gland_female_adult_51_years	chr15	57451514	57451535	57451534	+	RAMPAGE_only	7	11	23	1.328120	3.497056	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376871	57548255	STRG.29186.2	+	57376871,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57377165,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57548255	1.000000
adrenal_gland_female_adult_51_years	chr11	43881075	43881090	43881087	+	High_confidence	9	9	43	2.483006	4.442929	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.813953
adrenal_gland_female_adult_51_years	chr2	27910978	27911045	27911012	+	High_confidence	32	32	156	9.008116	5.529609	chr2	27910851	27911226	LTR|ERVL-MaLR|THE1C	+	chr2	27910940	28338901	STRG.4047.8	+	27910940,27929831,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28327273,28338449	27911143,27929908,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28327447,28338901	0.935897
adrenal_gland_female_adult_51_years	chr20	62367059	62367084	62367067	-	High_confidence	2	2	8	0.461955	2.521641	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.875000
adrenal_gland_female_adult_51_years	chr14	102191198	102191281	102191240	+	High_confidence	6	9	33	1.905563	4.718488	chr14	102191068	102191286	SINE|MIR|MIRb	-	chr14	102191240	102208848	WDR20|ENST00000555973.1	+	102191240,102194937,102208602	102191371,102195120,102208848	0.696970
adrenal_gland_female_adult_51_years	chr16	74485805	74485814	74485813	-	RAMPAGE_only	4	4	9	0.519699	2.750000	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	0.888889
adrenal_gland_female_adult_51_years	chr14	58424075	58424096	58424075	-	RAMPAGE_only	3	4	9	0.519699	2.725481	chr14	58423952	58424081	LINE|CR1|L3	-	chr14	58408663	58427114	TIMM9|ENST00000556007.6	-	58408663,58410842,58411906,58424007,58427053	58409099,58410938,58411971,58424095,58427114	1.000000
adrenal_gland_female_adult_51_years	chr19	36850372	36850396	36850384	+	High_confidence	4	4	17	0.981654	3.454822	chr19	36850362	36850429	LTR|ERV1|MER67D	-	chr19	36850360	36879572	ZNF345|ENST00000589046.1	+	36850360,36851727,36876784	36850515,36851904,36879572	0.529412
adrenal_gland_female_adult_51_years	chr8	91069624	91069645	91069624	-	High_confidence	3	3	7	0.404210	2.521641	chr8	91068863	91069609	LINE|L1|L1M6	-	chr8	91067910	91070189	OTUD6B-AS1|ENST00000524003.1	-	91067910,91069930	91069822,91070189	0.857143
adrenal_gland_female_adult_51_years	chr12	9065161	9065174	9065173	+	High_confidence	21	22	56	3.233683	4.706199	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.857143
adrenal_gland_female_adult_51_years	chr11	77129913	77129916	77129915	+	RAMPAGE_only	17	28	32	1.847819	3.802910	chr11	77129511	77129953	LINE|L2|L2b	-	chr11	77128301	77214954	MYO7A|ENST00000409619.6	+	77128301,77130588,77139400,77142708,77147797,77155906,77156659,77156861,77157278,77158276,77159446,77160162,77160972,77162119,77162852,77166055,77172747,77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353,77197480,77198494,77199648,77201447,77202299,77203059,77204075,77205461,77206096,77207288,77208429,77208696,77211151,77211820,77212951,77213859,77214606	77128489,77130652,77139480,77142822,77147950,77156091,77156781,77157004,77157392,77158430,77159523,77160282,77161115,77162330,77162988,77166162,77172885,77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194524,77197598,77198621,77199818,77201638,77202424,77203217,77204229,77205617,77206202,77207402,77208517,77208803,77211337,77211937,77213035,77213979,77214954	0.937500
adrenal_gland_female_adult_51_years	chr17	2975621	2975661	2975621	+	RAMPAGE_only	3	4	21	1.212631	4.297079	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2980321	3034717	STRG.31437.1	+	2980321,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034717	0.904762
adrenal_gland_female_adult_51_years	chr15	75626266	75626305	75626304	-	High_confidence	4	4	14	0.808421	3.235926	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.928571
adrenal_gland_female_adult_51_years	chr3	33864049	33864068	33864049	+	High_confidence	2	3	9	0.519699	2.725481	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33863895	33866468	PDCD6IP|ENST00000473593.1	+	33863895,33865242,33866350	33864129,33865430,33866468	0.555556
adrenal_gland_female_adult_51_years	chr4	4461946	4462005	4461960	-	High_confidence	120	124	439	25.349763	6.809152	chr4	4461848	4462205	LTR|ERVL|LTR79	+	chr4	4425160	4461954	STX18|ENST00000512195.5	-	4425160,4434769,4438393,4457190,4457422,4459371,4461905	4425222,4434858,4438509,4457257,4457500,4459487,4461954	0.917995
adrenal_gland_female_adult_51_years	chr2	177328237	177328280	177328279	+	RAMPAGE_only	15	15	51	2.944961	4.613340	chr2	177327759	177328473	LINE|L2|L2c	-	chr2	177392643	177543836	AGPS|ENST00000264167.8	+	177392643,177420268,177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177538073	177393049,177420358,177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177543836	0.588235
adrenal_gland_female_adult_51_years	chr16	11587465	11587487	11587465	-	High_confidence	3	3	12	0.692932	2.918296	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
adrenal_gland_female_adult_51_years	chr3	9192457	9192463	9192462	+	High_confidence	5	5	9	0.519699	2.947703	chr3	9192123	9192754	LTR|ERVL|MER77	+	chr3	9192492	9194453	LOC101927416|NR_121663.1	+	9192492,9193428,9193725	9192995,9193490,9194453	1.000000
adrenal_gland_female_adult_51_years	chr4	152412494	152412498	152412494	-	High_confidence	7	7	14	0.808421	3.378783	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
adrenal_gland_female_adult_51_years	chr6	31587200	31587275	31587201	+	High_confidence	5	8	44	2.540751	4.521829	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.909091
adrenal_gland_female_adult_51_years	chr17	75498252	75498269	75498268	+	High_confidence	4	4	14	0.808421	2.985228	chr17	75498201	75498275	LINE|L2|L2-1_Crp	+	chr17	75498216	75498814	TMEM94|ENST00000577194.1	+	75498216,75498443	75498323,75498814	0.500000
adrenal_gland_female_adult_51_years	chr3	101466859	101466886	101466874	-	RAMPAGE_only	8	9	19	1.097142	3.721612	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.947368
adrenal_gland_female_adult_51_years	chr4	26385909	26385944	26385909	+	RAMPAGE_only	5	5	20	1.154887	4.021928	chr4	26385792	26385970	SINE|Alu|AluJr	-	chr4	26362529	26420725	RBPJ|ENST00000504938.1	+	26362529,26383884,26384528,26386352,26406174,26415474,26420550	26362628,26383960,26384608,26386391,26406270,26415640,26420725	1.000000
adrenal_gland_female_adult_51_years	chr3	134485443	134485490	134485443	-	High_confidence	4	4	33	1.905563	4.438067	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.666667
adrenal_gland_female_adult_51_years	chr10	119038237	119038260	119038237	-	RAMPAGE_only	3	6	11	0.635188	3.095795	chr10	119037907	119038207	SINE|Alu|AluSq2	-	chr10	119033669	119080804	EIF3A|ENST00000369144.7	-	119033669,119037118,119038237,119041993,119044053,119049800,119050520,119051198,119056739,119056935,119057955,119059211,119059601,119060745,119061223,119065398,119069445,119070885,119072889,119073440,119073746,119080627	119036268,119037309,119038439,119042772,119044142,119049985,119050674,119051321,119056853,119057040,119058303,119059397,119059718,119060844,119061328,119065570,119069654,119071085,119073053,119073577,119073937,119080804	1.000000
adrenal_gland_female_adult_51_years	chr19	46413530	46413612	46413611	-	High_confidence	56	60	272	15.706459	5.963842	chr19	46413579	46413731	LTR|Gypsy|LTR104_Mam	-	chr19	46410378	46413564	CCDC8|ENST00000307522.4	-	46410378	46413564	0.988971
adrenal_gland_female_adult_51_years	chr9	92536601	92536704	92536651	-	High_confidence	16	22	78	4.504058	5.207222	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.884615
adrenal_gland_female_adult_51_years	chr8	117932737	117932753	117932752	-	RAMPAGE_only	6	6	12	0.692932	2.855389	chr8	117932667	117932818	DNA|hAT-Charlie|Charlie29a	-	chr8	117822464	118110414	EXT1|ENST00000436216.2	-	117822464,117830229,117831598,117835443,117837107,118110084	117822597,117830349,117831653,117835551,117837201,118110414	0.583333
adrenal_gland_female_adult_51_years	chr22	49657461	49657484	49657483	-	High_confidence	9	9	21	1.212631	3.784942	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49414523	49657504	C22orf34|ENST00000414287.5	-	49414523,49416601,49416814,49440875,49657404	49416035,49416735,49416928,49441212,49657504	0.666667
adrenal_gland_female_adult_51_years	chr5	95509600	95509601	95509600	-	RAMPAGE_only	6	6	9	0.519699	2.750000	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	0.888889
adrenal_gland_female_adult_51_years	chr7	150330271	150330325	150330304	+	High_confidence	6	6	28	1.616841	4.450212	chr7	150329923	150330471	DNA|hAT-Ac|OldhAT1	+	chr7	150329848	150332721	ZBED6CL|NM_138434.2	+	150329848	150332721	1.000000
adrenal_gland_female_adult_51_years	chr7	158863386	158863402	158863388	+	RAMPAGE_only	4	6	18	1.039398	3.616875	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.888889
adrenal_gland_female_adult_51_years	chr2	54632011	54632022	54632021	+	RAMPAGE_only	7	7	16	0.923909	2.952820	chr2	54631930	54632098	SINE|Alu|AluJb	+	chr2	54558393	54662308	SPTBN1|NM_178313.2	+	54558393,54599091,54612160,54616206,54617607,54618077,54621399,54622299,54623478,54624803,54625931,54628096,54628932,54629891,54630854,54632565,54637712,54642982,54644322,54645228,54645927,54646193,54647130,54648985,54649614,54653608,54655069,54655913,54657849,54659153,54659935	54558887,54599243,54612334,54616298,54617688,54618193,54621512,54622487,54623596,54624962,54626234,54628250,54629803,54630029,54631611,54632768,54637803,54643129,54644586,54645453,54646017,54646475,54647261,54649190,54649989,54653853,54655208,54655998,54658046,54659266,54662308	1.000000
adrenal_gland_female_adult_51_years	chr11	64226142	64226180	64226158	-	High_confidence	85	89	525	30.315776	6.954789	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.961905
adrenal_gland_female_adult_51_years	chr19	44914313	44914338	44914321	+	High_confidence	145	151	246	14.205106	4.821651	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.922764
adrenal_gland_female_adult_51_years	chr3	128626810	128626822	128626810	-	RAMPAGE_only	3	5	15	0.866165	3.640224	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	1.000000
adrenal_gland_female_adult_51_years	chr14	55671852	55671857	55671856	+	High_confidence	7	7	14	0.808421	3.392747	chr14	55671902	55672073	DNA|hAT-Charlie|MER5A	+	chr14	55671314	55684579	KTN1|ENST00000556631.1	+	55671314,55678351,55679564,55684098	55675918,55678444,55679685,55684579	0.928571
adrenal_gland_female_adult_51_years	chr16	20674404	20674408	20674404	+	High_confidence	5	5	18	1.039398	2.889549	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.888889
adrenal_gland_female_adult_51_years	chr18	55119563	55119564	55119563	-	High_confidence	4	4	7	0.404210	2.521641	chr18	55119430	55119710	LINE|L2|L2	+	chr18	55108310	55119598	LINC01929|ENST00000592405.1	-	55108310,55116953,55119495	55108653,55117083,55119598	0.857143
adrenal_gland_female_adult_51_years	chr20	37297344	37297345	37297344	+	High_confidence	8	8	9	0.519699	3.000000	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.888889
adrenal_gland_female_adult_51_years	chr1	231422725	231422749	231422748	-	RAMPAGE_only	4	6	16	0.923909	2.973557	chr1	231422714	231422871	SINE|MIR|MIRb	-	chr1	231363750	231425044	EGLN1|ENST00000366641.3	-	231363750,231367568,231370561,231373979,231420997	231366475,231367636,231370698,231374099,231425044	0.937500
adrenal_gland_female_adult_51_years	chr17	42136477	42136480	42136478	-	High_confidence	6	11	15	0.866165	3.506891	chr17	42136440	42136680	SINE|MIR|MIRb	+	chr17	42128691	42136484	RAB5C|ENST00000550504.5	-	42128691,42130336,42136264	42128800,42130590,42136484	0.866667
adrenal_gland_female_adult_51_years	chr12	4304391	4304671	4304587	+	RAMPAGE_only	74	78	261	15.071272	5.742902	chr12	4304530	4304620	DNA|hAT-Ac|OldhAT1	-	chr12	4276063	4305350	STRG.24662.2	+	4276063,4278759,4288841,4299859,4301014	4276220,4278919,4288990,4300942,4305350	0.996169
adrenal_gland_female_adult_51_years	chr1	54200536	54200558	54200557	+	High_confidence	19	20	42	2.425262	4.331687	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200195	54225464	MRPL37|ENST00000605337.5	+	54200195,54205017,54205294,54209945,54212500,54216140,54225124	54200589,54205201,54205410,54210131,54212658,54216344,54225464	0.952381
adrenal_gland_female_adult_51_years	chr20	50267474	50267488	50267477	+	High_confidence	6	9	24	1.385864	4.001629	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	1.000000
adrenal_gland_female_adult_51_years	chr7	102973321	102973387	102973321	+	High_confidence	41	44	113	6.525110	5.517782	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973436	102978667	NFE4|ENST00000638942.1	+	102973436,102975890,102978380	102973771,102976230,102978667	0.725664
adrenal_gland_female_adult_51_years	chr1	246689698	246689712	246689711	+	High_confidence	3	3	8	0.461955	3.000000	chr1	246689571	246689829	LTR|ERVL|LTR41	+	chr1	246690046	246691821	AL591848.2|ENST00000442712.1	+	246690046,246691467	246690214,246691821	0.875000
adrenal_gland_female_adult_51_years	chr19	17312068	17312103	17312086	+	RAMPAGE_only	3	3	11	0.635188	2.921928	chr19	17312030	17312227	SINE|MIR|MIRb	-	chr19	17309573	17314732	DDA1|ENST00000596925.1	+	17309573,17314022,17314337	17309657,17314103,17314732	0.727273
adrenal_gland_female_adult_51_years	chr7	2242922	2242923	2242922	+	High_confidence	13	13	13	0.750676	3.392747	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
adrenal_gland_female_adult_51_years	chr14	32075876	32075880	32075879	+	High_confidence	5	5	11	0.635188	3.321928	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32075975	32154827	STRG.27475.5	+	32075975,32090501,32117139,32146262,32149901,32152422,32154620	32076217,32094386,32117287,32146340,32150033,32152528,32154827	0.909091
adrenal_gland_female_adult_51_years	chr12	26832767	26832836	26832779	-	High_confidence	13	13	60	3.464660	5.135813	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.950000
adrenal_gland_female_adult_51_years	chr7	53811930	53811942	53811930	-	High_confidence	30	30	81	4.677291	5.743469	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.864198
adrenal_gland_female_adult_51_years	chr17	47099845	47099949	47099845	-	RAMPAGE_only	9	9	76	4.388569	4.761168	chr17	47099807	47099866	LTR|ERVL-MaLR|MLT1A	+	chr17	47018046	47067537	AC068152.1|ENST00000575173.1	-	47018046,47021581,47033277,47056459,47067413	47018465,47021721,47033381,47056753,47067537	0.881579
adrenal_gland_female_adult_51_years	chr14	81170385	81170420	81170413	-	High_confidence	21	38	134	7.737741	5.560423	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.947761
adrenal_gland_female_adult_51_years	chr7	38789812	38789813	38789812	-	RAMPAGE_only	13	14	15	0.866165	3.324863	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	0.933333
adrenal_gland_female_adult_51_years	chr4	141332616	141332617	141332616	-	High_confidence	79	79	81	4.677291	4.412163	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.975309
adrenal_gland_female_adult_51_years	chr11	68031371	68031398	68031394	+	High_confidence	4	4	13	0.750676	3.180833	chr11	68031347	68031647	SINE|Alu|AluSx1	-	chr11	68030742	68036514	NDUFS8|ENST00000526339.5	+	68030742,68032151,68032285,68032922,68033110,68036252,68036461	68030877,68032209,68032336,68033012,68033283,68036381,68036514	0.538462
adrenal_gland_female_adult_51_years	chr7	27792936	27792944	27792936	+	High_confidence	5	5	10	0.577443	2.947703	chr7	27792679	27792983	SINE|Alu|AluJo	+	chr7	27793137	27829022	TAX1BP1|ENST00000457186.2	+	27793137,27794322,27796115,27799964,27803108,27816348,27816889,27827737,27828627	27793212,27794446,27796219,27800090,27803180,27816394,27817038,27827820,27829022	0.900000
adrenal_gland_female_adult_51_years	chr9	39810033	39810116	39810033	-	High_confidence	75	76	277	15.995181	6.261901	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803599	39810013	STRG.19187.2	-	39803599,39809485,39809730	39803859,39809615,39810013	0.873646
adrenal_gland_female_adult_51_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	71	72	72	4.157592	4.918396	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.986111
adrenal_gland_female_adult_51_years	chr3	9192492	9192493	9192492	+	High_confidence	9	9	11	0.635188	3.321928	chr3	9192123	9192754	LTR|ERVL|MER77	+	chr3	9192492	9194453	LOC101927416|NR_121663.1	+	9192492,9193428,9193725	9192995,9193490,9194453	0.909091
adrenal_gland_female_adult_51_years	chr22	23700803	23700804	23700803	-	RAMPAGE_only	8	8	12	0.692932	2.855389	chr22	23700074	23701270	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	1.000000
adrenal_gland_female_adult_51_years	chr14	50756790	50756809	50756790	-	RAMPAGE_only	3	4	9	0.519699	2.500000	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.888889
adrenal_gland_female_adult_51_years	chr10	45594328	45594355	45594328	-	High_confidence	2	2	10	0.577443	3.321928	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45454592	45594491	STRG.21059.1	-	45454592,45458003,45459119,45461230,45464238,45489366,45533109,45553111,45594234	45457966,45458543,45459267,45461411,45464327,45489417,45533289,45553204,45594491	0.900000
adrenal_gland_female_adult_51_years	chr15	92914950	92914974	92914973	+	High_confidence	5	5	11	0.635188	3.277613	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.636364
adrenal_gland_female_adult_51_years	chr2	109247968	109247991	109247990	-	High_confidence	7	7	28	1.616841	4.356558	chr2	109247714	109248111	LTR|ERVL-MaLR|MLT1H2	-	chr2	109233268	109247939	STRG.5090.1	-	109233268,109242636,109247791	109233319,109243557,109247939	0.857143
adrenal_gland_female_adult_51_years	chr17	35432496	35432500	35432499	-	High_confidence	5	5	10	0.577443	2.947703	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.900000
adrenal_gland_female_adult_51_years	chr7	150322656	150322674	150322656	+	High_confidence	4062	4922	10698	617.748899	5.992460	chr7	150322211	150322830	LTR|ERV1|MER41B	+	chr7	150322638	150332721	STRG.17103.4	+	150322638,150325840,150328634	150323212,150326010,150332721	0.987661
adrenal_gland_female_adult_51_years	chr6	122444139	122444648	122444225	-	RAMPAGE_only	63	64	487	28.121491	5.781360	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	1.000000
adrenal_gland_female_adult_51_years	chr7	76109077	76109092	76109087	-	High_confidence	7	8	33	1.905563	4.210765	chr7	76108929	76109272	LTR|ERV1|MER61A	-	chr7	76104078	76109084	STRG.15894.1	-	76104078,76108230,76108434,76108868	76104275,76108309,76108762,76109084	0.818182
adrenal_gland_female_adult_51_years	chrX	40263364	40263365	40263364	+	High_confidence	5	7	7	0.404210	2.521641	chrX	40263153	40263681	LTR|ERVL-MaLR|MLT1N2	-	chrX	40262916	40287721	LOC101927476|NR_110386.1	+	40262916,40283440,40285528	40263552,40283612,40287721	0.714286
adrenal_gland_female_adult_51_years	chr12	109053947	109053961	109053951	-	High_confidence	21	21	56	3.233683	5.144641	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.910714
adrenal_gland_female_adult_51_years	chr1	155343321	155343324	155343323	-	RAMPAGE_only	8	15	19	1.097142	3.405822	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
adrenal_gland_female_adult_51_years	chr7	103353933	103353939	103353938	+	High_confidence	3	3	7	0.404210	2.521641	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.714286
adrenal_gland_female_adult_51_years	chr3	193614834	193614870	193614834	+	High_confidence	2	2	11	0.635188	2.921928	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.727273
adrenal_gland_female_adult_51_years	chr1	58903672	58903675	58903672	-	High_confidence	3	3	8	0.461955	2.807355	chr1	58903524	58903639	SINE|MIR|MIRb	-	chr1	58882871	58903679	AC105277.1|ENST00000635492.1	-	58882871,58889148,58895844,58896997,58903567	58883734,58889208,58896009,58897090,58903679	0.875000
adrenal_gland_female_adult_51_years	chr4	2860848	2860862	2860848	+	RAMPAGE_only	8	9	22	1.270375	3.658993	chr4	2860711	2860912	SINE|MIR|MIR	-	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.909091
adrenal_gland_female_adult_51_years	chr19	20611504	20611523	20611504	+	High_confidence	139	148	297	17.150068	4.925003	chr19	20611050	20611625	LTR|ERV1|LTR61	+	chr19	20611558	20615389	AC010636.1|ENST00000598116.1	+	20611558,20615058	20611855,20615389	0.902357
adrenal_gland_female_adult_51_years	chr6	125219581	125219594	125219593	+	High_confidence	11	12	30	1.732330	4.280226	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.966667
adrenal_gland_female_adult_51_years	chr22	36481305	36481335	36481313	-	High_confidence	14	15	60	3.464660	4.266248	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.883333
adrenal_gland_female_adult_51_years	chr1	179856097	179856112	179856097	-	RAMPAGE_only	2	2	7	0.404210	2.521641	chr1	179855896	179856189	SINE|Alu|AluSz	+	chr1	179839966	179877799	TOR1AIP2|ENST00000367612.7	-	179839966,179847534,179850844,179852631,179877238,179877692	179846828,179847636,179851363,179852811,179877373,179877799	1.000000
adrenal_gland_female_adult_51_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	12	12	15	0.866165	3.664498	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.666667
adrenal_gland_female_adult_51_years	chr3	9787801	9787831	9787801	-	High_confidence	4	7	16	0.923909	3.577820	chr3	9787746	9788031	LINE|L2|L2c	-	chr3	9779966	9788083	TADA3|ENST00000492103.1	-	9779966,9784027,9785315,9787005,9787198	9780549,9784213,9785425,9787109,9788083	1.000000
adrenal_gland_female_adult_51_years	chr11	46865460	46865472	46865471	-	RAMPAGE_only	9	14	22	1.270375	4.011365	chr11	46865442	46865504	LINE|CR1|L3	+	chr11	46856869	46862933	LRP4|ENST00000529604.1	-	46856869,46862605	46859315,46862933	0.954545
adrenal_gland_female_adult_51_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	17	18	18	1.039398	3.807764	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	0.944444
adrenal_gland_female_adult_51_years	chr3	80770347	80770393	80770377	-	High_confidence	12	13	61	3.522404	4.922826	chr3	80769735	80770387	LTR|ERV1|LTR1A1	-	chr3	80761450	80770037	STRG.7967.1	-	80761450,80769758	80761573,80770037	0.606557
adrenal_gland_female_adult_51_years	chr5	170267210	170267260	170267210	-	High_confidence	13	13	96	5.543456	5.074927	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.947917
adrenal_gland_female_adult_51_years	chr7	87519343	87519438	87519363	-	High_confidence	12	12	103	5.947667	5.663127	chr7	87519184	87519318	SINE|5S-Deu-L2|AmnSINE1	-	chr7	87505901	87518963	ABCB1|ENST00000475929.5	-	87505901,87509274,87515230,87516508,87518880	87506043,87509481,87515428,87516665,87518963	0.941748
adrenal_gland_female_adult_51_years	chr6	31587009	31587016	31587009	+	High_confidence	5	8	14	0.808421	3.238901	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.642857
adrenal_gland_female_adult_51_years	chr22	30971777	30971778	30971777	+	High_confidence	6	6	9	0.519699	2.725481	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	1.000000
adrenal_gland_female_adult_51_years	chr15	91408711	91408735	91408711	+	High_confidence	2	3	13	0.750676	3.022055	chr15	91408656	91408747	SINE|MIR|MIRc	-	chr15	91408707	91605211	CRAT37|ENST00000555947.5	+	91408707,91473220,91604876	91408841,91473316,91605211	0.692308
adrenal_gland_female_adult_51_years	chr20	33401581	33401609	33401581	+	RAMPAGE_only	5	6	19	1.097142	3.892407	chr20	33401623	33401937	DNA|hAT-Charlie|MER33	+	chr20	33490074	33618546	CBFA2T2|ENST00000471007.1	+	33490074,33606955,33611093,33618447	33490301,33607099,33611335,33618546	0.578947
adrenal_gland_female_adult_51_years	chr7	154928474	154928504	154928503	+	High_confidence	37	38	62	3.580149	5.153366	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.967742
adrenal_gland_female_adult_51_years	chr8	18063205	18063226	18063216	-	High_confidence	4	6	17	0.981654	3.734522	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
adrenal_gland_female_adult_51_years	chr1	54413492	54413493	54413492	-	High_confidence	9	9	13	0.750676	3.180833	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54412707	54413466	SSBP3|ENST00000448572.1	-	54412707,54413080,54413355	54412877,54413253,54413466	0.769231
adrenal_gland_female_adult_51_years	chr11	93499344	93499345	93499344	-	High_confidence	6	6	9	0.519699	2.947703	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	0.888889
adrenal_gland_female_adult_51_years	chr12	47223495	47223551	47223547	+	High_confidence	42	42	117	6.756087	6.068874	chr12	47223277	47223596	LINE|L2|L2	-	chr12	47223544	47235238	PCED1B|ENST00000551777.1	+	47223544,47223923,47235006	47223672,47224039,47235238	0.529915
adrenal_gland_female_adult_51_years	chr16	9108737	9108738	9108737	+	RAMPAGE_only	29	29	30	1.732330	3.371105	chr16	9108771	9108857	SINE|MIR|MIRb	+	chr16	9104847	9113181	AC087190.3|ENST00000574616.2	+	9104847	9113181	0.966667
adrenal_gland_female_adult_51_years	chr6	77369117	77369167	77369144	-	RAMPAGE_only	13	13	60	3.464660	5.242398	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77273084	77316711	STRG.13839.1	-	77273084,77316635	77273307,77316711	0.533333
adrenal_gland_female_adult_51_years	chr19	46495128	46495200	46495199	-	High_confidence	7	7	17	0.981654	3.616875	chr19	46495193	46495527	LTR|Gypsy|MamGyp-int	-	chr19	46491190	46495912	PNMAL2|NM_020709.2	-	46491190	46495912	1.000000
adrenal_gland_female_adult_51_years	chrX	120594139	120594160	120594159	+	High_confidence	9	9	27	1.559097	4.161978	chrX	120594152	120598861	LINE|L1|L1MA1	+	chrX	120594080	120611047	MCTS1|ENST00000493274.5	+	120594080,120594950,120605406,120606078,120608224,120611010	120594272,120595068,120605559,120606176,120608358,120611047	0.925926
adrenal_gland_female_adult_51_years	chrX	19350015	19350022	19350015	+	RAMPAGE_only	5	5	13	0.750676	3.180833	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19352828	19355445	PDHA1|ENST00000479146.1	+	19352828,19354490,19355348	19353173,19354583,19355445	0.615385
adrenal_gland_female_adult_51_years	chrX	74000299	74000300	74000299	+	RAMPAGE_only	8	8	10	0.577443	2.947703	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944594	74008854	STRG.38473.3	+	73944594,73946998,73998767,73998953,74004269	73944662,73947374,73998844,74000496,74008854	0.900000
adrenal_gland_female_adult_51_years	chr15	90467553	90467567	90467553	+	RAMPAGE_only	3	3	10	0.577443	2.947703	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90388260	90500371	IQGAP1|ENST00000560738.1	+	90388260,90390773,90466046,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390824,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500371	0.800000
adrenal_gland_female_adult_51_years	chr6	34757079	34757115	34757103	+	High_confidence	6	6	20	1.154887	3.471354	chr6	34757127	34757285	LINE|L2|L2a	+	chr6	34757093	34773857	SNRPC|NR_029472.1	+	34757093,34762594,34767907,34770290,34773445	34757551,34762703,34767997,34770395,34773857	0.900000
adrenal_gland_female_adult_51_years	chr3	45034833	45034841	45034840	+	RAMPAGE_only	11	12	25	1.443608	4.053661	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	1.000000
adrenal_gland_female_adult_51_years	chr11	77175226	77175303	77175302	+	High_confidence	32	34	116	6.698343	5.922815	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175282	77213918	STRG.23734.5	+	77175282,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77191674,77192050,77194353,77197480,77198494,77199648,77201447,77202299,77203059,77204075,77205461,77206096,77207288,77208429,77208696,77211151,77211820,77212951,77213859	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77191782,77192278,77194524,77197598,77198621,77199818,77201638,77202424,77203217,77204229,77205617,77206202,77207402,77208517,77208803,77211337,77211937,77213035,77213918	0.974138
adrenal_gland_female_adult_51_years	chr7	150329845	150330011	150329986	+	High_confidence	38	40	285	16.457136	5.493402	chr7	150329923	150330471	DNA|hAT-Ac|OldhAT1	+	chr7	150329848	150332721	ZBED6CL|NM_138434.2	+	150329848	150332721	0.989474
adrenal_gland_female_adult_51_years	chr5	80407084	80407086	80407084	+	High_confidence	5	7	9	0.519699	2.750000	chr5	80406956	80407268	SINE|Alu|AluJr	-	chr5	80408012	80440376	ZFYVE16|NM_001284237.1	+	80408012,80434108,80436755,80439935	80408153,80434217,80439007,80440376	0.777778
adrenal_gland_female_adult_51_years	chr5	151687244	151687251	151687244	-	High_confidence	11	11	18	1.039398	3.292770	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.944444
adrenal_gland_female_adult_51_years	chr3	151808021	151808064	151808045	+	RAMPAGE_only	11	13	36	2.078796	4.474938	chr3	151806183	151808619	LTR|ERV1|HERVFH21-int	+	chr3	151814036	151828488	AADAC|ENST00000232892.11	+	151814036,151817365,151820382,151824662,151827575	151814300,151817588,151820452,151824834,151828488	0.944444
adrenal_gland_female_adult_51_years	chr7	100037768	100037802	100037801	+	RAMPAGE_only	3	3	12	0.692932	2.625815	chr7	100037735	100038031	SINE|Alu|AluSx3	+	chr7	100023407	100041688	ZKSCAN1|ENST00000620510.1	+	100023407,100023551,100024153,100029860,100030248,100033304	100023461,100023932,100024307,100029952,100030375,100041688	1.000000
adrenal_gland_female_adult_51_years	chr1	225810576	225810583	225810582	+	High_confidence	6	6	11	0.635188	2.921928	chr1	225810574	225810980	LTR|ERV1|LTR7	-	chr1	225810411	225845559	EPHX1|ENST00000614058.4	+	225810411,225828724,225831778,225838653,225839216,225839828,225842365,225844497,225845145	225810615,225828912,225831959,225838881,225839346,225840037,225842474,225844623,225845559	0.818182
adrenal_gland_female_adult_51_years	chr9	20694517	20694518	20694517	+	RAMPAGE_only	7	7	7	0.404210	2.521641	chr9	20694323	20694599	DNA|hAT-Charlie|Charlie15b	-	chr9	20715320	20995955	FOCAD|ENST00000338382.10	+	20715320,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.857143
adrenal_gland_female_adult_51_years	chr19	20423688	20423704	20423703	-	RAMPAGE_only	7	10	38	2.194285	4.073885	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.736842
adrenal_gland_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	189	193	193	11.144657	4.952902	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.943005
adrenal_gland_female_adult_51_years	chr14	34586235	34586292	34586235	-	RAMPAGE_only	5	6	30	1.732330	3.015922	chr14	34585901	34586200	SINE|Alu|AluSg	-	chr14	34561093	34630109	SNX6|ENST00000396526.7	-	34561093,34567685,34567853,34575755,34581560,34586229,34593044,34597549,34603347,34605595,34608029,34609637,34629906	34563175,34567771,34568013,34575842,34581600,34586305,34593150,34597645,34603471,34605717,34608140,34609742,34630109	1.000000
adrenal_gland_female_adult_51_years	chr8	143039246	143039267	143039256	+	High_confidence	13	13	53	3.060450	4.673823	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.962264
adrenal_gland_female_adult_51_years	chr3	197913277	197913321	197913295	-	High_confidence	85	92	218	12.588265	6.089036	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	1.000000
adrenal_gland_female_adult_51_years	chr19	3058299	3058300	3058299	-	High_confidence	7	7	8	0.461955	2.807355	chr19	3058272	3058434	SINE|MIR|MIRc	-	chr19	3053211	3057748	AES|ENST00000587393.5	-	3053211,3054119,3055663,3056311,3057678	3054040,3054194,3055726,3056356,3057748	0.625000
adrenal_gland_female_adult_51_years	chr19	51795244	51795252	51795244	+	High_confidence	3	4	6	0.346466	2.584963	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	1.000000
adrenal_gland_female_adult_51_years	chrX	23782625	23782647	23782625	-	RAMPAGE_only	2	2	9	0.519699	2.725481	chrX	23782563	23782777	DNA|hAT-Charlie|Charlie1	-	chrX	23703683	23766475	ACOT9|ENST00000379295.5	-	23703683,23704693,23704992,23705508,23705767,23706627,23707876,23713134,23721880,23722669,23730526,23730815,23733171,23735918,23756926,23762436,23765546	23703982,23704844,23705080,23705594,23705858,23706739,23707944,23713208,23721984,23722753,23730564,23730986,23733217,23736016,23757109,23762582,23766475	0.555556
adrenal_gland_female_adult_51_years	chr1	6820080	6820194	6820084	+	RAMPAGE_only	14	15	126	7.275786	4.710654	chr1	6819710	6820142	LINE|L1|L1MC4	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.753968
adrenal_gland_female_adult_51_years	chr2	200588166	200588222	200588221	+	High_confidence	15	15	58	3.349171	5.122995	chr2	200587906	200588390	LINE|L2|L2a	-	chr2	200588173	200603297	AOX1|ENST00000454629.1	+	200588173,200593145,200595271,200597396,200599619,200602283,200603266	200588270,200593203,200595368,200597505,200599746,200602345,200603297	0.810345
adrenal_gland_female_adult_51_years	chr19	17312141	17312176	17312159	+	RAMPAGE_only	6	6	20	1.154887	3.366091	chr19	17312030	17312227	SINE|MIR|MIRb	-	chr19	17309573	17314732	DDA1|ENST00000596925.1	+	17309573,17314022,17314337	17309657,17314103,17314732	0.850000
adrenal_gland_female_adult_51_years	chr5	32403116	32403169	32403148	-	RAMPAGE_only	23	37	120	6.929320	5.294031	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354851	32420176	STRG.10990.2	-	32354851,32363947,32364163,32379114,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820	32355939,32364045,32364275,32379210,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420176	0.991667
adrenal_gland_female_adult_51_years	chr14	53217890	53217919	53217890	+	High_confidence	7	7	18	1.039398	3.690117	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217954	53786106	AL365295.1|ENST00000648066.1	+	53217954,53313715,53318030,53369451,53687198,53737666,53765657,53769014,53785144,53785727	53218055,53313790,53318138,53369501,53687374,53737766,53765719,53769133,53785250,53786106	0.555556
adrenal_gland_female_adult_51_years	chr16	2757851	2757871	2757851	+	High_confidence	7	7	27	1.559097	4.003856	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.814815
adrenal_gland_female_adult_51_years	chr17	77127872	77127877	77127872	+	High_confidence	19	19	30	1.732330	4.720050	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.833333
adrenal_gland_female_adult_51_years	chr12	50924037	50924079	50924078	+	High_confidence	21	29	51	2.944961	4.893661	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	0.980392
adrenal_gland_female_adult_51_years	chr17	4032375	4032412	4032411	-	High_confidence	12	12	20	1.154887	3.746439	chr17	4032368	4032452	LINE|L2|L2b	+	chr17	4024918	4033359	ZZEF1|ENST00000573606.2	-	4024918,4032125,4032827	4025118,4032258,4033359	0.800000
adrenal_gland_female_adult_51_years	chrX	153348631	153348663	153348631	+	RAMPAGE_only	2	2	7	0.404210	2.521641	chrX	153348340	153349105	DNA|TcMar-Tc2|Kanga2_a	-	chrX	153344276	153351393	ZNF275|ENST00000647705.1	+	153344276,153346818	153345621,153351393	1.000000
adrenal_gland_female_adult_51_years	chr17	59619894	59619929	59619894	+	High_confidence	718	841	2612	150.828204	6.295727	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.963629
adrenal_gland_female_adult_51_years	chr1	167937013	167937026	167937013	-	High_confidence	3	3	7	0.404210	2.521641	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167918067	167937040	MPC2|ENST00000271373.8	-	167918067,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937040	1.000000
adrenal_gland_female_adult_51_years	chr2	232845850	232845876	232845875	+	RAMPAGE_only	11	11	28	1.616841	4.458591	chr2	232845876	232846546	LINE|CR1|L3	+	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.964286
adrenal_gland_female_adult_51_years	chr11	123625588	123625747	123625685	+	RAMPAGE_only	15	15	115	6.640599	5.380692	chr11	123625572	123625740	SINE|MIR|MIR3	+	chr11	123591086	123627774	GRAMD1B|ENST00000646146.1	+	123591086,123594081,123594734,123595941,123600467,123603425,123605321,123606608,123608658,123609794,123610195,123612760,123613454,123614744,123618344,123618692,123619106,123622505	123591541,123594166,123594838,123596037,123600548,123603541,123605478,123606798,123608802,123609913,123610338,123612864,123613658,123614835,123618356,123618800,123619224,123627774	1.000000
adrenal_gland_female_adult_51_years	chr12	53251611	53251684	53251653	+	High_confidence	12	17	90	5.196990	5.594142	chr12	53251547	53251701	SINE|MIR|MIRc	-	chr12	53251652	53253752	MFSD5|ENST00000551660.2	+	53251652,53252817	53252035,53253752	1.000000
adrenal_gland_female_adult_51_years	chr11	65367405	65367438	65367437	+	High_confidence	9	10	27	1.559097	4.323856	chr11	65367362	65367667	SINE|Alu|AluY	-	chr11	65367437	65375299	AP000944.1|ENST00000533886.1	+	65367437,65367926,65375230	65367815,65368043,65375299	0.814815
adrenal_gland_female_adult_51_years	chr1	147172956	147172974	147172973	+	High_confidence	4	4	11	0.635188	2.921928	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.909091
adrenal_gland_female_adult_51_years	chr12	118138993	118139017	118139009	+	High_confidence	44	44	174	10.047514	6.372048	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.839080
adrenal_gland_female_adult_51_years	chr5	176411455	176411459	176411458	-	RAMPAGE_only	20	25	40	2.309773	4.907072	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392792	176416538	STRG.12511.2	-	176392792,176397606,176397929,176410256,176416176,176416413	176392945,176397718,176398047,176410303,176416214,176416538	0.775000
adrenal_gland_female_adult_51_years	chr2	231270659	231270700	231270672	+	High_confidence	17	26	88	5.081502	5.675119	chr2	231270419	231270687	LINE|L1|HAL1	-	chr2	231270742	231291435	ARMC9|ENST00000481520.1	+	231270742,231272954,231276635,231278381,231282058,231291352	231271072,231273078,231276775,231278458,231282133,231291435	0.920455
adrenal_gland_female_adult_51_years	chr16	15006394	15006395	15006394	+	RAMPAGE_only	29	29	32	1.847819	4.066428	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.625000
adrenal_gland_female_adult_51_years	chr9	20658312	20658347	20658312	+	High_confidence	24	25	120	6.929320	5.407086	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.800000
adrenal_gland_female_adult_51_years	chr3	51973644	51973712	51973648	+	High_confidence	13	13	101	5.832178	5.828506	chr3	51973505	51973664	SINE|Alu|AluJb	-	chr3	51973683	51981189	STRG.7538.11	+	51973683,51977870,51978258,51980392,51980835	51973905,51978082,51978374,51980628,51981189	0.980198
adrenal_gland_female_adult_51_years	chr3	179740075	179740076	179740075	+	RAMPAGE_only	4	4	7	0.404210	2.584963	chr3	179740053	179740112	SINE|MIR|MIR	+	chr3	179721563	179761151	USP13|ENST00000497155.1	+	179721563,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179761111	179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179761151	0.857143
adrenal_gland_female_adult_51_years	chr22	42644615	42644634	42644621	-	High_confidence	5	7	25	1.443608	4.163856	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	1.000000
adrenal_gland_female_adult_51_years	chr4	158172987	158173025	158173024	-	High_confidence	1525	1576	2828	163.300980	7.682653	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158130799	158173023	STRG.10559.3	-	158130799,158155610,158170246,158170465,158172867	158131012,158155825,158170347,158171599,158173023	0.917256
adrenal_gland_female_adult_51_years	chr11	61354299	61354345	61354299	-	High_confidence	5	6	21	1.212631	3.689704	chr11	61354208	61354347	SINE|Alu|FRAM	+	chr11	61351058	61354741	CYB561A3|ENST00000540139.5	-	61351058,61352984,61353783	61351147,61353139,61354741	1.000000
adrenal_gland_female_adult_51_years	chr4	1241488	1241491	1241490	-	High_confidence	6	7	10	0.577443	3.169925	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1235752	1241463	CTBP1|ENST00000515690.1	-	1235752,1238182,1241324	1236316,1238337,1241463	0.700000
adrenal_gland_female_adult_51_years	chr11	62600175	62600220	62600175	-	High_confidence	2	2	10	0.577443	3.121928	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.900000
adrenal_gland_female_adult_51_years	chr16	47589065	47589099	47589098	+	RAMPAGE_only	2	3	6	0.346466	2.584963	chr16	47589128	47589377	SINE|MIR|MIR	+	chr16	47594149	47598036	PHKB|ENST00000566436.1	+	47594149,47596372,47597803	47594214,47596531,47598036	0.666667
adrenal_gland_female_adult_51_years	chr22	39320328	39320392	39320328	-	High_confidence	6	7	34	1.963307	4.712319	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	1.000000
adrenal_gland_female_adult_51_years	chr16	2757798	2757814	2757813	+	High_confidence	14	14	28	1.616841	4.162295	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.892857
adrenal_gland_female_adult_51_years	chr20	18793975	18793987	18793986	-	High_confidence	5	5	11	0.635188	3.095795	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18787970	18793982	LINC00652|NR_026884.1	-	18787970,18789573,18793664	18788898,18789709,18793982	1.000000
adrenal_gland_female_adult_51_years	chr1	32816888	32816909	32816908	-	High_confidence	7	7	13	0.750676	3.084963	chr1	32816717	32816919	LINE|L2|L2c	+	chr1	32780250	32817244	YARS|ENST00000616261.1	-	32780250,32781047,32781128,32782403,32786361,32786939,32791161,32797762,32806481,32810590,32810910,32817187	32780278,32781127,32781145,32782539,32786447,32787075,32791254,32797843,32806611,32810766,32811057,32817244	0.615385
adrenal_gland_female_adult_51_years	chr15	23403999	23404028	23404010	+	High_confidence	4	6	14	0.808421	3.182006	chr15	23404024	23404146	SINE|MIR|MIRb	+	chr15	23403872	23407288	STRG.28540.1	+	23403872,23406959	23404108,23407288	1.000000
adrenal_gland_female_adult_51_years	chr7	107069835	107069836	107069835	+	High_confidence	7	7	7	0.404210	2.521641	chr7	107069817	107070165	LINE|L1|L1ME4c	-	chr7	107069624	107140953	PRKAR2B|ENST00000393613.6	+	107069624,107070280,107121951,107128211,107140846	107069986,107070316,107122004,107128295,107140953	0.571429
adrenal_gland_female_adult_51_years	chr12	113334808	113334825	113334823	-	High_confidence	2	4	8	0.461955	2.521641	chr12	113334758	113334823	LINE|L2|L2b	-	chr12	113307799	113334833	SLC8B1|ENST00000553238.5	-	113307799,113310233,113315334,113316525,113316941,113318963,113320580,113320849,113321055,113321195,113332722,113334442	113307912,113310355,113315476,113316656,113317001,113319071,113320686,113320907,113321108,113321348,113332960,113334833	0.875000
adrenal_gland_female_adult_51_years	chr1	1721637	1721638	1721637	-	High_confidence	8	8	8	0.461955	2.750000	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.750000
adrenal_gland_female_adult_51_years	chr9	121463300	121463301	121463300	-	RAMPAGE_only	6	6	8	0.461955	2.500000	chr9	121463204	121463259	LINE|L2|L2	-	chr9	121446910	121467922	GGTA1P|ENST00000488429.5	-	121446910,121452145,121460103,121461253,121463292,121467846	121447595,121452275,121460219,121461314,121463328,121467922	0.875000
adrenal_gland_female_adult_51_years	chr14	67396723	67396724	67396723	-	RAMPAGE_only	8	8	9	0.519699	2.500000	chr14	67396493	67396938	LINE|L2|L2a	+	chr14	67386986	67392705	PLEK2|ENST00000556532.1	-	67386986,67388223,67392325,67392661	67387456,67388302,67392427,67392705	0.555556
adrenal_gland_female_adult_51_years	chr10	27509905	27509928	27509905	+	RAMPAGE_only	5	5	13	0.750676	3.392747	chr10	27509948	27510212	LINE|L2|L2c	+	chr10	27504618	27537966	RAB18|ENST00000423465.1	+	27504618,27504978,27509874,27526827,27531528,27532506,27533734,27533927,27537875	27504724,27505190,27509930,27526889,27531615,27532579,27533853,27533994,27537966	0.692308
adrenal_gland_female_adult_51_years	chr16	30729567	30729568	30729567	+	RAMPAGE_only	6	7	7	0.404210	2.521641	chr16	30729600	30729733	LINE|CR1|L3	+	chr16	30707257	30739733	SRCAP|ENST00000395059.6	+	30707257,30707571,30709512,30709850,30710753,30710998,30711570,30711834,30712261,30712678,30713207,30713518,30716065,30716292,30720161,30720712,30721188,30722121,30722962,30723583,30728965,30729369,30733279,30733601,30733893,30734495,30736199,30736540,30737048	30707368,30707712,30709735,30710128,30710847,30711088,30711744,30712157,30712439,30712815,30713377,30713711,30716202,30716479,30720331,30720978,30721476,30722286,30723229,30725082,30729231,30729572,30733449,30733798,30734008,30734615,30736394,30736624,30739733	1.000000
adrenal_gland_female_adult_51_years	chr17	82081606	82081623	82081613	-	High_confidence	3	3	10	0.577443	2.503258	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.500000
adrenal_gland_female_adult_51_years	chr12	123617831	123617864	123617863	+	High_confidence	3	4	8	0.461955	3.000000	chr12	123617854	123617910	LINE|RTE-X|L4_A_Mam	-	chr12	123617779	123620422	STRG.26394.1	+	123617779,123618668,123619431,123619963	123617872,123618837,123619724,123620422	1.000000
adrenal_gland_female_adult_51_years	chrX	106860233	106860258	106860247	+	RAMPAGE_only	4	4	17	0.981654	3.280639	chrX	106858571	106860340	LINE|L1|L1PA15	-	chrX	106865545	106866862	TBC1D8B|ENST00000492970.2	+	106865545,106866796	106866033,106866862	0.882353
adrenal_gland_female_adult_51_years	chr19	6736600	6736617	6736600	-	High_confidence	2	2	8	0.461955	2.500000	chr19	6736397	6736568	SINE|MIR|MIRb	-	chr19	6730085	6737260	GPR108|ENST00000430424.8	-	6730085,6730986,6731198,6731472,6731890,6732024,6732262,6732475,6732986,6733167,6733569,6733844,6734004,6734182,6735621,6735907,6736591,6736989	6730384,6731111,6731282,6731522,6731934,6732155,6732380,6732549,6733062,6733301,6733674,6733913,6734054,6734307,6735704,6735958,6736711,6737260	0.750000
adrenal_gland_female_adult_51_years	chr20	50131139	50131140	50131139	-	High_confidence	6	6	8	0.461955	2.750000	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	1.000000
adrenal_gland_female_adult_51_years	chr9	68975842	68975865	68975845	-	High_confidence	9	10	42	2.425262	4.582794	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.547619
adrenal_gland_female_adult_51_years	chr2	232890990	232891005	232891001	-	High_confidence	5	9	35	2.021052	4.536286	chr2	232890857	232891264	LINE|L2|L2c	+	chr2	232882228	232890980	NGEF|ENST00000424488.5	-	232882228,232883310,232883980,232885279,232888032,232890933	232882265,232883466,232884144,232885369,232888107,232890980	0.685714
adrenal_gland_female_adult_51_years	chr3	120596753	120596764	120596753	-	RAMPAGE_only	4	4	18	1.039398	3.852169	chr3	120596706	120596936	SINE|MIR|MIR	+	chr3	120392292	120451253	FSTL1|ENST00000295633.7	-	120392292,120399882,120402807,120403241,120404852,120409531,120410951,120411853,120415922,120450683,120450896	120396996,120399959,120402918,120403354,120404971,120409662,120410984,120411983,120416027,120450746,120451253	0.777778
adrenal_gland_female_adult_51_years	chr5	55982727	55982778	55982757	-	High_confidence	4	4	16	0.923909	3.625000	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.875000
adrenal_gland_female_adult_51_years	chr9	133540946	133540991	133540990	+	RAMPAGE_only	9	9	24	1.385864	4.053509	chr9	133541033	133541162	SINE|MIR|MIR3	+	chr9	133539607	133575518	STRG.20383.3	+	133539607,133540597,133540877,133544469,133547037,133554356,133555557,133561197,133566935,133568272,133568602,133569407,133570330,133573842,133574745	133539873,133540738,133541001,133544550,133547213,133554693,133555930,133561295,133567062,133568486,133568758,133569578,133570507,133573987,133575518	1.000000
adrenal_gland_female_adult_51_years	chr16	28608308	28608321	28608308	-	High_confidence	2	2	9	0.519699	2.750000	chr16	28608009	28608286	SINE|Alu|AluSp	-	chr16	28605195	28608920	SULT1A1|ENST00000569554.5	-	28605195,28606055,28606760,28606950,28608290,28608477,28608707	28605933,28606236,28606855,28607077,28608388,28608603,28608920	0.888889
adrenal_gland_female_adult_51_years	chr5	150640005	150640051	150640050	+	High_confidence	313	331	1187	68.542526	7.297304	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150640016	150659207	STRG.12295.2	+	150640016,150647943,150656403	150640134,150650303,150659207	0.986521
adrenal_gland_female_adult_51_years	chr9	77822994	77823008	77822997	-	High_confidence	75	81	177	10.220747	5.716363	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77716211	77822997	STRG.19508.2	-	77716211,77728513,77794462,77797519,77815615,77822890	77721513,77728667,77794592,77797648,77815770,77822997	0.960452
adrenal_gland_female_adult_51_years	chr5	57186580	57186624	57186580	+	RAMPAGE_only	6	9	35	2.021052	3.735281	chr5	57186403	57186591	LINE|L1|L1ME1	-	chr5	57175945	57263085	GPBP1|ENST00000511209.5	+	57175945,57214073,57221375,57230845,57231097,57235965,57246299,57247074,57249453,57250953,57261179,57262593	57176400,57214193,57221396,57230969,57231321,57236032,57246484,57247215,57249576,57251141,57261282,57263085	0.971429
adrenal_gland_female_adult_51_years	chr6	149590962	149590985	149590962	+	RAMPAGE_only	8	9	13	0.750676	3.392747	chr6	149591012	149591303	SINE|Alu|AluSc	+	chr6	149566293	149591748	GINM1|ENST00000650599.1	+	149566293,149572284,149572506,149578821,149579833,149580590,149582439,149590726	149566534,149572344,149572603,149578973,149579990,149580723,149582603,149591748	0.923077
adrenal_gland_female_adult_51_years	chrX	48683361	48683363	48683361	+	High_confidence	10	23	23	1.328120	4.088779	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.913043
adrenal_gland_female_adult_51_years	chrX	53546437	53546455	53546454	-	RAMPAGE_only	8	8	18	1.039398	3.572431	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.722222
adrenal_gland_female_adult_51_years	chr4	53015507	53015556	53015507	-	RAMPAGE_only	2	2	9	0.519699	2.725481	chr4	53015303	53015519	LINE|L2|L2b	-	chr4	52872981	53366075	SCFD2|NM_152540.3	-	52872981,52885746,52907456,52920724,53145332,53273825,53313635,53352597,53365103	52874061,52885866,52907591,52920870,53145582,53274001,53313763,53352766,53366075	0.888889
adrenal_gland_female_adult_51_years	chr12	12927733	12927756	12927733	+	High_confidence	65	69	149	8.603906	6.567604	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.630872
adrenal_gland_female_adult_51_years	chr16	30499535	30499568	30499550	-	High_confidence	63	63	179	10.336236	5.304111	chr16	30499510	30499629	SINE|MIR|MIR1_Amn	+	chr16	30498765	30499554	AC116348.2|ENST00000563751.1	-	30498765,30499363	30499151,30499554	0.938547
adrenal_gland_female_adult_51_years	chr11	77571338	77571352	77571351	+	High_confidence	12	12	22	1.270375	4.004886	chr11	77570921	77571455	LTR|ERV1|LTR61	+	chr11	77571371	77574414	STRG.23735.1	+	77571371,77574210	77571685,77574414	0.954545
adrenal_gland_female_adult_51_years	chr12	15001807	15001839	15001838	+	High_confidence	4	4	13	0.750676	3.084963	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.846154
adrenal_gland_female_adult_51_years	chrX	5726311	5726356	5726324	-	High_confidence	60	67	121	6.987065	5.423763	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.884298
adrenal_gland_female_adult_51_years	chr16	70590319	70590329	70590328	+	RAMPAGE_only	6	6	17	0.981654	3.375000	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.764706
adrenal_gland_female_adult_51_years	chr9	98943575	98943585	98943575	+	High_confidence	6	6	17	0.981654	3.280639	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.941176
adrenal_gland_female_adult_51_years	chr10	102836770	102836778	102836770	-	High_confidence	5	7	13	0.750676	3.084963	chr10	102836703	102836755	SINE|MIR|MIRb	-	chr10	102830604	102836772	CYP17A1|ENST00000640633.1	-	102830604,102831507,102832510,102832992,102834035,102834784,102835253,102836713	102830985,102831611,102832680,102833208,102834122,102835014,102835392,102836772	0.769231
adrenal_gland_female_adult_51_years	chr17	41871775	41871792	41871775	-	RAMPAGE_only	2	3	8	0.461955	2.521641	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.875000
adrenal_gland_female_adult_51_years	chr7	150325912	150326002	150325933	+	RAMPAGE_only	35	35	144	8.315184	5.800108	chr7	150325771	150325966	DNA|hAT-Charlie|Chap1_Mam	+	chr7	150322638	150332721	STRG.17103.4	+	150322638,150325840,150328634	150323212,150326010,150332721	0.902778
adrenal_gland_female_adult_51_years	chr6	41961858	41961860	41961858	-	RAMPAGE_only	3	5	8	0.461955	2.500000	chr6	41961729	41962101	LINE|L2|L2b	+	chr6	41934932	41941848	CCND3|NM_001136125.2	-	41934932,41936558,41937234,41941451	41936107,41936695,41937394,41941848	1.000000
adrenal_gland_female_adult_51_years	chr19	17376934	17376977	17376949	-	High_confidence	12	13	41	2.367518	4.803056	chr19	17376820	17376901	SINE|MIR|MIR1_Amn	-	chr19	17351447	17377349	PLVAP|NM_031310.2	-	17351447,17360527,17360771,17365285,17366098,17376919	17352368,17360609,17360832,17365998,17366195,17377349	0.975610
adrenal_gland_female_adult_51_years	chr5	96797192	96797194	96797193	-	RAMPAGE_only	4	7	11	0.635188	2.663533	chr5	96797097	96797154	DNA|hAT-Blackjack|MER81	-	chr5	96790584	96793671	ERAP1|ENST00000503311.1	-	96790584,96792060,96793399	96790643,96792192,96793671	0.545455
adrenal_gland_female_adult_51_years	chr5	151158489	151158509	151158498	-	High_confidence	9	9	31	1.790074	3.659537	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.806452
adrenal_gland_female_adult_51_years	chr14	68882880	68882897	68882880	-	High_confidence	7	15	29	1.674586	3.937193	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.965517
adrenal_gland_female_adult_51_years	chr20	44685294	44685335	44685324	-	RAMPAGE_only	4	4	18	1.039398	3.969816	chr20	44685068	44685316	SINE|MIR|MIRb	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.722222
adrenal_gland_female_adult_51_years	chr11	18706988	18707033	18707001	-	High_confidence	9	12	42	2.425262	4.221811	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18705417	18706129	IGSF22|ENST00000510673.1	-	18705417,18705816	18705617,18706129	0.595238
adrenal_gland_female_adult_51_years	chr1	33021409	33021456	33021455	-	RAMPAGE_only	11	11	18	1.039398	3.614369	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	1.000000
adrenal_gland_female_adult_51_years	chr7	21851136	21851185	21851174	+	High_confidence	13	13	117	6.756087	5.265514	chr7	21851065	21851438	LTR|ERVL-MaLR|THE1C	+	chr7	21851161	21861970	DNAH11|ENST00000607413.5	+	21851161,21852466,21854314,21861852	21851320,21852631,21854455,21861970	0.914530
adrenal_gland_female_adult_51_years	chr1	20685295	20685330	20685306	-	High_confidence	51	53	262	15.129016	6.847134	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.877863
adrenal_gland_female_adult_51_years	chr1	204870075	204870100	204870099	+	High_confidence	4	8	24	1.385864	4.418296	chr1	204870144	204870213	LINE|CR1|Plat_L3	+	chr1	204870830	205018371	NFASC|ENST00000404076.5	+	204870830,204920631,204944225,204952010,204954187,204954828,204957655,204968248,204968797,204970615,204973275,204974178,204974656,204975270,204976670,204978967,204979361,204980369,204981797,204984026,204985909,204987417,204988632,204991291,205009556,205012796,205016307	204871053,204920740,204944406,204952116,204954384,204954951,204957826,204968360,204968982,204970747,204973419,204974290,204974823,204975418,204976795,204979069,204979559,204980440,204982020,204984142,204986114,204987540,204988806,204991306,205009688,205012866,205018371	0.541667
adrenal_gland_female_adult_51_years	chr9	113375494	113375497	113375494	-	High_confidence	2	3	8	0.461955	3.000000	chr9	113375358	113375529	SINE|MIR|MIR3	-	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	0.875000
adrenal_gland_female_adult_51_years	chr15	75347042	75347082	75347042	+	High_confidence	10	10	32	1.847819	4.324849	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.625000
adrenal_gland_female_adult_51_years	chr7	76439696	76439708	76439696	+	High_confidence	20	25	36	2.078796	3.368550	chr7	76439423	76439703	SINE|Alu|AluJb	+	chr7	76439897	76442071	ZP3|ENST00000467555.1	+	76439897,76440249,76440474,76441841	76439990,76440341,76440611,76442071	0.972222
adrenal_gland_female_adult_51_years	chr16	253927	253928	253927	+	High_confidence	9	9	9	0.519699	2.947703	chr16	253772	253931	SINE|MIR|MIR	-	chr16	254121	259520	FAM234A|ENST00000496874.1	+	254121,259482	254681,259520	0.555556
adrenal_gland_female_adult_51_years	chr15	93863033	93863066	93863055	+	High_confidence	4	4	16	0.923909	3.327820	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.875000
adrenal_gland_female_adult_51_years	chr12	10363964	10363965	10363964	+	High_confidence	15	15	21	1.212631	3.684184	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.857143
adrenal_gland_female_adult_51_years	chr1	162781245	162781287	162781286	+	RAMPAGE_only	41	42	68	3.926615	5.013848	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.970588
adrenal_gland_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	700	840	1540	88.926276	5.279513	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.979870
adrenal_gland_female_adult_51_years	chr4	158167223	158167224	158167223	-	RAMPAGE_only	36	36	47	2.713984	4.970573	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158124579	158172566	FAM198B|NM_016613.6	-	158124579,158130785,158155610,158170465,158172338	158127614,158131012,158155825,158171599,158172566	0.936170
adrenal_gland_female_adult_51_years	chr10	74438146	74438147	74438146	+	RAMPAGE_only	6	6	9	0.519699	2.500000	chr10	74437274	74438232	LINE|L2|L2a	+	chr10	74176685	74709303	ADK|ENST00000372734.3	+	74176685,74200763,74224537,74314666,74394140,74398470,74525255,74589281,74600378,74670182,74708320	74176886,74200838,74224591,74314745,74394313,74398579,74525426,74589317,74600493,74670269,74709303	0.777778
adrenal_gland_female_adult_51_years	chr7	104940943	104940944	104940943	+	High_confidence	10	10	10	0.577443	2.646439	chr7	104939974	104941430	LTR|ERV1|LTR12C	+	chr7	104941062	104962060	AC007384.1|ENST00000415513.1	+	104941062,104961983	104941670,104962060	1.000000
adrenal_gland_female_adult_51_years	chr8	38143397	38144211	38143397	-	RAMPAGE_only	1258	1258	5208	300.732498	6.245003	chr8	38143305	38143603	SINE|Alu|AluSx3	-	chr8	38143651	38150992	STAR|ENST00000520114.1	-	38143651,38146288,38148199,38150754	38146147,38146447,38148754,38150992	0.547811
adrenal_gland_female_adult_53_years	chr4	182905196	182905208	182905207	-	RAMPAGE_only	24	26	53	2.488206	4.390436	chr4	182904639	182905323	LINE|L2|L2c	+	chr4	182877501	182917345	STRG.15605.2	-	182877501,182891402,182893030,182894488,182914922,182915460,182917287	182877760,182891477,182893127,182894605,182915058,182915575,182917345	0.830189
adrenal_gland_female_adult_53_years	chr20	44986796	44986803	44986796	+	RAMPAGE_only	2	2	7	0.328631	2.807355	chr20	44986042	44986998	LINE|L2|L2a	-	chr20	44966521	45075608	STK4|ENST00000372801.5	+	44966521,44972077,44978442,44981828,44987131,44995089,44997168,45000391,45001166,45024972,45053085,45075017	44966603,44972158,44978571,44981943,44987296,44995257,44997306,45000520,45001353,45025130,45053180,45075608	0.857143
adrenal_gland_female_adult_53_years	chr12	56157322	56157459	56157322	+	High_confidence	21	21	153	7.182935	5.033924	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.947712
adrenal_gland_female_adult_53_years	chr1	174874418	174874439	174874438	+	High_confidence	5	5	20	0.938946	3.721612	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874457	174958182	RABGAP1L|ENST00000478442.5	+	174874457,174877391,174957456,174957890	174874506,174877605,174957549,174958182	0.600000
adrenal_gland_female_adult_53_years	chr12	95454901	95454943	95454942	-	High_confidence	23	23	119	5.586728	4.611757	chr12	95449175	95456110	LTR|ERV1|HERV9-int	-	chr12	95451286	95454939	STRG.36097.1	-	95451286,95454791	95451502,95454939	0.848739
adrenal_gland_female_adult_53_years	chr17	77127869	77127875	77127872	+	High_confidence	6	6	15	0.704209	3.773557	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.933333
adrenal_gland_female_adult_53_years	chr12	53464815	53464842	53464815	+	RAMPAGE_only	7	7	15	0.704209	3.240224	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	1.000000
adrenal_gland_female_adult_53_years	chr2	27978248	27978252	27978251	+	High_confidence	1085	1168	1931	90.655217	7.291999	chr2	27978041	27978454	LTR|ERVL-MaLR|MSTB	+	chr2	27978197	28338901	STRG.5602.6	+	27978197,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28338449	27978374,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28338901	0.951321
adrenal_gland_female_adult_53_years	chr1	147173219	147173261	147173225	+	High_confidence	19	20	109	5.117255	5.873241	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.807339
adrenal_gland_female_adult_53_years	chr8	143281669	143281687	143281686	-	High_confidence	80	95	251	11.783770	5.399910	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.717131
adrenal_gland_female_adult_53_years	chr7	11193340	11193366	11193340	+	High_confidence	24	24	57	2.675996	4.253530	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.807018
adrenal_gland_female_adult_53_years	chr2	227534932	227534939	227534932	+	RAMPAGE_only	10	11	16	0.751157	3.373557	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.937500
adrenal_gland_female_adult_53_years	chr20	3795750	3795789	3795750	+	High_confidence	11	12	70	3.286310	5.377437	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
adrenal_gland_female_adult_53_years	chr9	128684459	128684493	128684479	-	RAMPAGE_only	14	14	75	3.521047	4.968532	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.840000
adrenal_gland_female_adult_53_years	chr3	112302483	112302484	112302483	+	High_confidence	4	4	7	0.328631	2.807355	chr3	112302478	112303209	LTR|ERV1|HERV3-int	+	chr3	112302477	112332791	AC112487.1|ENST00000498032.5	+	112302477,112326521,112327610,112329345,112332185	112302714,112326650,112327694,112329386,112332791	0.714286
adrenal_gland_female_adult_53_years	chr5	109383412	109383465	109383464	-	High_confidence	3	4	17	0.798104	3.572469	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
adrenal_gland_female_adult_53_years	chr5	90931108	90931123	90931122	+	High_confidence	4	4	11	0.516420	3.095795	chr5	90930978	90931288	LINE|L2|L2c	-	chr5	90931149	91072581	ADGRV1|ENST00000640369.1	+	90931149,90965414,90985343,91072446	90931218,90965531,90985522,91072581	0.545455
adrenal_gland_female_adult_53_years	chr4	73144752	73144793	73144752	-	RAMPAGE_only	3	3	14	0.657262	3.039149	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	1.000000
adrenal_gland_female_adult_53_years	chr17	27889183	27889202	27889201	-	RAMPAGE_only	3	3	12	0.563367	3.418296	chr17	27888753	27889272	LINE|CR1|L3	-	chr17	27878313	27892321	LYRM9|ENST00000379103.7	-	27878313,27880273,27882568,27882938,27892242	27879490,27880366,27882712,27883130,27892321	1.000000
adrenal_gland_female_adult_53_years	chr5	149431023	149431042	149431023	-	High_confidence	2	2	7	0.328631	2.521641	chr5	149430947	149431025	SINE|MIR|MIRc	-	chr5	149374370	149430965	STRG.17950.2	-	149374370,149376735,149393384,149430863	149374600,149377025,149393494,149430965	1.000000
adrenal_gland_female_adult_53_years	chr2	200588166	200588222	200588166	+	High_confidence	11	14	49	2.300417	4.787782	chr2	200587906	200588390	LINE|L2|L2a	-	chr2	200588173	200603297	AOX1|ENST00000454629.1	+	200588173,200593145,200595271,200597396,200599619,200602283,200603266	200588270,200593203,200595368,200597505,200599746,200602345,200603297	0.755102
adrenal_gland_female_adult_53_years	chr2	185782507	185782508	185782507	+	RAMPAGE_only	11	11	17	0.798104	3.452820	chr2	185782182	185782614	LINE|L2|L2c	-	chr2	185738894	185833290	FSIP2|ENST00000424728.5	+	185738894,185739345,185743132,185744321,185745428,185746668,185747312,185753721,185756191,185760987,185761971,185763182,185764501,185782704,185786251,185788642,185799696,185813544,185815370,185824433,185828155,185831812,185833089	185738993,185739471,185743294,185744411,185745568,185746810,185747423,185753842,185756278,185761103,185762017,185763289,185764565,185782762,185786288,185797526,185809133,185814042,185815471,185824480,185828199,185831882,185833290	0.647059
adrenal_gland_female_adult_53_years	chr3	151808045	151808046	151808045	+	RAMPAGE_only	14	14	17	0.798104	3.750000	chr3	151806183	151808619	LTR|ERV1|HERVFH21-int	+	chr3	151813806	151828488	STRG.12290.8	+	151813806,151814138,151817365,151820382,151824662,151827575	151814034,151814300,151817588,151820452,151824834,151828488	0.941176
adrenal_gland_female_adult_53_years	chr11	8776406	8776426	8776425	-	High_confidence	6	6	10	0.469473	2.725481	chr11	8776369	8776474	LINE|L2|L2b	-	chr11	8730980	8776679	ST5|ENST00000533016.1	-	8730980,8750620,8776191	8731209,8750725,8776679	0.900000
adrenal_gland_female_adult_53_years	chr8	80485592	80485605	80485592	+	High_confidence	12	12	32	1.502313	4.478232	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.875000
adrenal_gland_female_adult_53_years	chr4	38816533	38816534	38816533	-	High_confidence	15	16	21	0.985893	3.884184	chr4	38816327	38816690	LTR|ERVL-MaLR|MSTA	-	chr4	38814411	38815898	STRG.13745.1	-	38814411	38815898	0.619048
adrenal_gland_female_adult_53_years	chr13	112703279	112703318	112703293	+	High_confidence	4	6	16	0.751157	3.280639	chr13	112703103	112703441	LTR|ERVL-MaLR|MLT1A	-	chr13	112703286	112810699	ATP11A|ENST00000466946.5	+	112703286,112785134,112804956,112806212,112810618	112703342,112785257,112805046,112806293,112810699	0.812500
adrenal_gland_female_adult_53_years	chr6	159681135	159681145	159681144	-	RAMPAGE_only	4	4	9	0.422526	2.500000	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	0.888889
adrenal_gland_female_adult_53_years	chr12	15163760	15163771	15163770	+	High_confidence	8	8	19	0.891999	3.725481	chr12	15163550	15163797	LTR|ERVL|LTR33A	-	chr12	15163332	15173595	STRG.34739.1	+	15163332,15168627,15168842,15169506,15171067	15163829,15168760,15168955,15169628,15173595	0.736842
adrenal_gland_female_adult_53_years	chrX	16653677	16653711	16653704	+	RAMPAGE_only	5	8	18	0.845051	3.461320	chrX	16653607	16653738	DNA|hAT-Charlie|MER5A	+	chrX	16650157	16654670	S100G|ENST00000380200.3	+	16650157,16650998,16654404	16650203,16651141,16654670	0.944444
adrenal_gland_female_adult_53_years	chr8	144106393	144106440	144106439	+	High_confidence	4	6	19	0.891999	3.461320	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.526316
adrenal_gland_female_adult_53_years	chr18	66670192	66670193	66670192	-	RAMPAGE_only	21	21	28	1.314524	3.580462	chr18	66669951	66670217	LINE|L2|L2	+	chr18	66501186	66604138	CDH19|NR_073130.1	-	66501186,66508994,66511567,66529844,66534985,66543970,66544718,66551093,66554404,66568415,66572009,66603953	66505302,66509218,66511685,66529966,66535107,66544224,66544903,66551258,66554524,66568710,66572316,66604138	0.928571
adrenal_gland_female_adult_53_years	chr22	39021125	39021156	39021155	+	High_confidence	17	17	105	4.929465	5.559218	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.990476
adrenal_gland_female_adult_53_years	chr6	111606255	111606277	111606276	-	High_confidence	8	8	20	0.938946	4.121928	chr6	111606274	111606582	SINE|Alu|AluY	+	chr6	111555377	111606274	TRAF3IP2|NM_147686.3	-	111555377,111562964,111566443,111567623,111572894,111575642,111580196,111591257,111605775	111559551,111563039,111566560,111567692,111572983,111575821,111580389,111592094,111606274	1.000000
adrenal_gland_female_adult_53_years	chr10	92826829	92826851	92826850	+	High_confidence	3	4	14	0.657262	3.521641	chr10	92826510	92827023	LINE|L2|L2a	-	chr10	92826830	93059494	EXOC6|NM_001013848.3	+	92826830,92834712,92893348,92894793,92894929,92899598,92909426,92915757,92919981,92928338,92934143,92934309,92935813,92940726,92948273,92952272,92954629,92955579,92974052,92997473,93014193,93056923,93058222	92826944,92834824,92893520,92894841,92895020,92899644,92909631,92915913,92920050,92928422,92934190,92934430,92935885,92940824,92948379,92952382,92954741,92955714,92974232,92997615,93014267,93057036,93059494	0.928571
adrenal_gland_female_adult_53_years	chr5	90964809	90964815	90964809	+	RAMPAGE_only	3	3	7	0.328631	2.521641	chr5	90964589	90964900	LINE|L2|L2a	-	chr5	90931149	91072581	ADGRV1|ENST00000640369.1	+	90931149,90965414,90985343,91072446	90931218,90965531,90985522,91072581	0.857143
adrenal_gland_female_adult_53_years	chr1	147172956	147172976	147172973	+	High_confidence	3	3	9	0.422526	2.750000	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.666667
adrenal_gland_female_adult_53_years	chr5	80407084	80407085	80407084	+	High_confidence	7	8	9	0.422526	2.750000	chr5	80406956	80407268	SINE|Alu|AluJr	-	chr5	80408012	80440376	ZFYVE16|NM_001284237.1	+	80408012,80434108,80436755,80439935	80408153,80434217,80439007,80440376	0.666667
adrenal_gland_female_adult_53_years	chr4	184339459	184339478	184339459	-	RAMPAGE_only	26	26	45	2.112628	3.967940	chr4	184339404	184339941	LTR|ERV1|MER41B	-	chr4	184334220	184347912	STRG.15654.1	-	184334220,184334526,184341952,184347712	184334419,184334611,184342053,184347912	0.822222
adrenal_gland_female_adult_53_years	chr9	129489251	129489270	129489251	+	High_confidence	3	5	8	0.375578	2.500000	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	1.000000
adrenal_gland_female_adult_53_years	chr3	129724082	129724117	129724116	-	High_confidence	24	28	82	3.849678	4.701591	chr3	129724100	129724190	LINE|CR1|L3	+	chr3	129647796	129724106	STRG.11951.8	-	129647796,129654967,129670329,129723963	129651795,129655103,129671264,129724106	0.987805
adrenal_gland_female_adult_53_years	chr15	33194695	33194709	33194695	-	High_confidence	5	5	11	0.516420	2.646439	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.818182
adrenal_gland_female_adult_53_years	chr19	17376920	17376935	17376920	-	High_confidence	3	3	9	0.422526	3.169925	chr19	17376820	17376901	SINE|MIR|MIR1_Amn	-	chr19	17351447	17377349	PLVAP|NM_031310.2	-	17351447,17360527,17360771,17365285,17366098,17376919	17352368,17360609,17360832,17365998,17366195,17377349	1.000000
adrenal_gland_female_adult_53_years	chr19	12800944	12801045	12800944	-	High_confidence	28	29	142	6.666515	5.098731	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.992958
adrenal_gland_female_adult_53_years	chr19	3062922	3062983	3062922	-	High_confidence	27	35	163	7.652408	5.568608	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.987730
adrenal_gland_female_adult_53_years	chr8	99892036	99892057	99892056	-	RAMPAGE_only	114	114	188	8.826091	4.777734	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.994681
adrenal_gland_female_adult_53_years	chr12	122064281	122064309	122064308	+	RAMPAGE_only	3	3	7	0.328631	2.584963	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.857143
adrenal_gland_female_adult_53_years	chr4	87499804	87499841	87499804	-	RAMPAGE_only	6	6	27	1.267577	4.440636	chr4	87499693	87499843	LINE|RTE-BovB|MamRTE1	-	chr4	87494416	87528619	SPARCL1|ENST00000535835.5	-	87494416,87494980,87499520,87504821,87528554	87494598,87495127,87499585,87504923,87528619	0.555556
adrenal_gland_female_adult_53_years	chr1	25820171	25820216	25820192	+	High_confidence	10	10	110	5.164202	5.604233	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.754545
adrenal_gland_female_adult_53_years	chr7	107580245	107580267	107580264	+	High_confidence	742	747	3388	159.057419	7.042925	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.945396
adrenal_gland_female_adult_53_years	chr21	34512192	34512220	34512219	-	High_confidence	3	3	8	0.375578	3.000000	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.625000
adrenal_gland_female_adult_53_years	chr20	44532314	44532334	44532333	+	High_confidence	3	4	8	0.375578	2.807355	chr20	44532283	44532460	SINE|MIR|MIR	+	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.750000
adrenal_gland_female_adult_53_years	chr17	59651208	59651256	59651208	+	RAMPAGE_only	4	7	31	1.455366	4.028073	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.870968
adrenal_gland_female_adult_53_years	chr7	130566625	130566626	130566625	-	RAMPAGE_only	10	10	11	0.516420	2.521928	chr7	130566496	130566917	LTR|ERV1|LTR46	-	chr7	130506523	130564511	COPG2|ENST00000617523.1	-	130506523,130507273,130507684,130508568,130547673,130548402,130549313,130550523,130551240,130552354,130554480,130555036,130561032,130563268,130564259	130506806,130507372,130507823,130508659,130547845,130548542,130549376,130550649,130551344,130552430,130554724,130555132,130561221,130563336,130564511	0.636364
adrenal_gland_female_adult_53_years	chr6	166957409	166957431	166957430	-	High_confidence	5	5	9	0.422526	3.000000	chr6	166957416	166957859	LINE|L2|L2a	+	chr6	166929539	166957184	RNASET2|ENST00000476238.6	-	166929539,166931043,166934090,166938894,166943018,166946681,166948569,166952487,166956096,166957125	166929791,166931118,166934136,166939008,166943089,166946739,166948625,166952548,166956191,166957184	0.777778
adrenal_gland_female_adult_53_years	chr1	89128427	89128474	89128443	+	High_confidence	18	27	122	5.727569	5.481728	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89128434	89179792	STRG.2181.1	+	89128434,89148586,89149331,89179318	89128644,89148680,89149546,89179792	0.950820
adrenal_gland_female_adult_53_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	8	8	8	0.375578	2.500000	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.875000
adrenal_gland_female_adult_53_years	chr2	218398232	218398233	218398232	+	High_confidence	8	8	12	0.563367	2.855389	chr2	218398216	218398343	SINE|MIR|MIRb	+	chr2	218398255	218404418	CTDSP1|ENST00000491064.5	+	218398255,218401563,218402113,218402348,218403034,218403231,218404296	218398332,218401712,218402215,218402405,218403127,218403417,218404418	0.500000
adrenal_gland_female_adult_53_years	chr11	67887541	67887568	67887541	+	High_confidence	6	8	15	0.704209	2.985228	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67887567	67894032	STRG.32896.2	+	67887567,67888152,67893878	67887708,67888324,67894032	0.933333
adrenal_gland_female_adult_53_years	chr14	81192681	81192703	81192681	-	RAMPAGE_only	4	4	10	0.469473	2.725481	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.900000
adrenal_gland_female_adult_53_years	chr7	87040212	87040249	87040212	-	RAMPAGE_only	5	5	15	0.704209	3.906891	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.666667
adrenal_gland_female_adult_53_years	chr2	37365966	37365967	37365966	+	RAMPAGE_only	6	6	8	0.375578	2.500000	chr2	37365632	37366257	LINE|L2|L2	-	chr2	37367122	37373030	QPCT|ENST00000469098.1	+	37367122,37369684,37372355,37372681	37367408,37369784,37372472,37373030	0.500000
adrenal_gland_female_adult_53_years	chr3	107202999	107203000	107202999	-	RAMPAGE_only	7	8	9	0.422526	2.750000	chr3	107202830	107203195	LTR|ERVL-MaLR|THE1B	-	chr3	107111484	107240627	LINC00882|ENST00000479612.6	-	107111484,107129887,107240442	107112146,107129992,107240627	0.666667
adrenal_gland_female_adult_53_years	chr15	78456028	78456092	78456028	+	RAMPAGE_only	39	45	178	8.356618	6.295649	chr15	78455788	78456214	LTR|ERVL-MaLR|MLT1F	-	chr15	78465298	78470948	IREB2|ENST00000559427.1	+	78465298,78466270,78470531,78470719	78465388,78466489,78470601,78470948	0.556180
adrenal_gland_female_adult_53_years	chr15	23404011	23404054	23404011	+	High_confidence	3	4	16	0.751157	2.682589	chr15	23404024	23404146	SINE|MIR|MIRb	+	chr15	23403875	23407224	STRG.40029.1	+	23403875,23406959	23404108,23407224	0.937500
adrenal_gland_female_adult_53_years	chr3	29280838	29280899	29280838	-	High_confidence	7	7	39	1.830944	4.464889	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.743590
adrenal_gland_female_adult_53_years	chr17	40191757	40191761	40191760	-	High_confidence	16	21	30	1.408419	4.081728	chr17	40191739	40191838	DNA|hAT-Tip100|MER91A	-	chr17	40189982	40191750	STRG.44884.1	-	40189982,40191697	40190909,40191750	1.000000
adrenal_gland_female_adult_53_years	chr11	72758533	72758572	72758533	-	High_confidence	5	7	36	1.690102	3.738219	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72759309	STARD10|ENST00000537351.5	-	72754728,72755121,72755700,72757766,72758529,72759233	72754782,72755142,72755753,72757884,72758633,72759309	0.777778
adrenal_gland_female_adult_53_years	chr11	83257938	83257973	83257938	-	High_confidence	28	28	138	6.478726	5.992907	chr11	83257834	83258260	LTR|ERVL-MaLR|MLT1J	+	chr11	83225193	83258712	STRG.33278.2	-	83225193,83257832	83225778,83258712	0.695652
adrenal_gland_female_adult_53_years	chr1	95041557	95041558	95041557	-	RAMPAGE_only	11	11	17	0.798104	2.780639	chr1	95041410	95041646	SINE|Alu|AluJo	+	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.941176
adrenal_gland_female_adult_53_years	chr2	7023780	7023813	7023791	+	RAMPAGE_only	9	12	24	1.126735	4.418296	chr2	7023743	7023814	SINE|MIR|MIRc	-	chr2	6917391	7044179	RNF144A|NM_014746.4	+	6917391,6940947,6996915,7014453,7014711,7020472,7024368,7030125,7039628	6917622,6941147,6997061,7014558,7014772,7020680,7024516,7030215,7044179	0.875000
adrenal_gland_female_adult_53_years	chr5	150125450	150125474	150125450	-	High_confidence	4	4	11	0.516420	3.095795	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113836	150125520	STRG.17987.6	-	150113836,150115150,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444	150115099,150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125520	1.000000
adrenal_gland_female_adult_53_years	chr14	21024318	21024363	21024339	-	High_confidence	3	4	14	0.657262	2.661226	chr14	21024322	21024505	SINE|MIR|MIR3	+	chr14	21021821	21024295	NDRG2|ENST00000554561.5	-	21021821,21022061,21022391,21023240,21024029	21021879,21022182,21022497,21023321,21024295	0.928571
adrenal_gland_female_adult_53_years	chr1	179322610	179322615	179322610	+	RAMPAGE_only	4	4	9	0.422526	3.000000	chr1	179322542	179322907	LINE|L1|L1MB8	-	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.777778
adrenal_gland_female_adult_53_years	chr8	11864444	11864455	11864444	-	RAMPAGE_only	4	4	8	0.375578	2.500000	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.625000
adrenal_gland_female_adult_53_years	chr6	2881285	2881286	2881285	-	High_confidence	45	45	45	2.112628	4.924969	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.977778
adrenal_gland_female_adult_53_years	chr16	87381453	87381509	87381469	-	RAMPAGE_only	19	19	86	4.037467	5.496077	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87326986	87383757	FBXO31|ENST00000311635.11	-	87326986,87333885,87335303,87336154,87342876,87343597,87347173,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87360366,87383757	0.686047
adrenal_gland_female_adult_53_years	chr12	79455514	79455560	79455536	-	High_confidence	8	10	43	2.018733	4.795581	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.976744
adrenal_gland_female_adult_53_years	chr4	141212875	141212897	141212875	-	High_confidence	4	4	11	0.516420	2.921928	chr4	141212711	141212921	LTR|ERVL-MaLR|MSTA	-	chr4	140865570	141212877	RNF150|ENST00000420921.6	-	140865570,140911143,140925976,140947653,140949300,140967622,141053665,141212793	140868379,140911354,140926073,140947736,140949372,140967873,141053731,141212877	0.727273
adrenal_gland_female_adult_53_years	chr7	134527596	134527597	134527596	+	High_confidence	80	84	85	3.990520	5.932209	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.941176
adrenal_gland_female_adult_53_years	chr11	58578102	58578156	58578132	-	High_confidence	22	31	106	4.976413	5.676185	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58550418	58578139	STRG.32433.4	-	58550418,58551064,58554840,58564154,58570555,58576733	58550880,58551232,58554940,58564201,58570713,58578139	0.830189
adrenal_gland_female_adult_53_years	chr7	76439696	76439708	76439696	+	High_confidence	5	6	18	0.845051	2.855954	chr7	76439423	76439703	SINE|Alu|AluJb	+	chr7	76439897	76442071	ZP3|ENST00000467555.1	+	76439897,76440249,76440474,76441841	76439990,76440341,76440611,76442071	1.000000
adrenal_gland_female_adult_53_years	chr14	102191198	102191281	102191280	+	High_confidence	8	8	50	2.347365	4.795729	chr14	102191068	102191286	SINE|MIR|MIRb	-	chr14	102191240	102208848	WDR20|ENST00000555973.1	+	102191240,102194937,102208602	102191371,102195120,102208848	0.540000
adrenal_gland_female_adult_53_years	chr16	8868126	8868133	8868126	-	High_confidence	6	6	14	0.657262	3.392747	chr16	8868119	8868156	SINE|MIR|MIRc	-	chr16	8858089	8868343	CARHSP1|ENST00000562843.5	-	8858089,8859170,8868048	8858472,8859335,8868343	0.571429
adrenal_gland_female_adult_53_years	chr2	69798826	69798855	69798849	-	RAMPAGE_only	13	13	36	1.690102	4.391831	chr2	69796454	69798802	LTR|ERV1|HUERS-P3-int	-	chr2	69789561	69789926	STRG.6441.1	-	69789561	69789926	0.555556
adrenal_gland_female_adult_53_years	chr5	147382883	147382900	147382883	+	High_confidence	11	11	52	2.441259	4.730935	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.730769
adrenal_gland_female_adult_53_years	chr5	41426015	41426060	41426015	+	High_confidence	56	57	312	14.647554	4.225193	chr5	41425316	41427700	LINE|L1|L1MC1	-	chr5	41426045	41428622	STRG.16176.1	+	41426045,41428404	41426151,41428622	0.983974
adrenal_gland_female_adult_53_years	chr3	101466855	101466901	101466900	-	RAMPAGE_only	4	4	19	0.891999	3.572431	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.894737
adrenal_gland_female_adult_53_years	chr7	75934771	75934775	75934774	+	RAMPAGE_only	7	10	14	0.657262	3.392747	chr7	75934337	75935241	LTR|ERVL-MaLR|MST-int	+	chr7	75953988	75986854	POR|ENST00000454934.5	+	75953988,75972412,75979450,75980338,75981516,75982223,75983519,75983737,75984776,75985057,75985578,75985922,75986158,75986336	75954180,75972461,75979579,75980488,75981606,75982322,75983636,75983856,75984958,75985207,75985849,75986068,75986241,75986854	0.500000
adrenal_gland_female_adult_53_years	chr17	19386319	19386335	19386319	-	High_confidence	3	3	8	0.375578	2.521641	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.875000
adrenal_gland_female_adult_53_years	chr9	83340537	83340587	83340537	-	RAMPAGE_only	18	19	40	1.877892	4.503056	chr9	83340246	83340568	LINE|L2|L2a	-	chr9	83242989	83331961	FRMD3|NM_001244961.1	-	83242989,83248054,83290602,83298747,83299111,83309535,83310484,83311886,83313659,83331851	83243215,83248516,83290727,83298816,83299186,83309624,83310548,83311975,83313747,83331961	0.950000
adrenal_gland_female_adult_53_years	chr11	18706988	18707033	18706988	-	High_confidence	9	11	33	1.549261	4.377727	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18704304	18707014	STRG.32019.1	-	18704304,18705816,18706913	18704538,18706146,18707014	0.727273
adrenal_gland_female_adult_53_years	chr4	26385904	26385920	26385919	+	RAMPAGE_only	4	4	10	0.469473	2.947703	chr4	26385792	26385970	SINE|Alu|AluJr	-	chr4	26362529	26420725	RBPJ|ENST00000504938.1	+	26362529,26383884,26384528,26386352,26406174,26415474,26420550	26362628,26383960,26384608,26386391,26406270,26415640,26420725	0.900000
adrenal_gland_female_adult_53_years	chr2	108601363	108601374	108601363	-	High_confidence	8	8	28	1.314524	4.356558	chr2	108601093	108601668	LTR|ERVL|LTR66	-	chr2	108595110	108601366	STRG.7134.1	-	108595110,108601274	108595729,108601366	0.642857
adrenal_gland_female_adult_53_years	chr2	231270672	231270706	231270673	+	High_confidence	9	14	49	2.300417	5.084963	chr2	231270419	231270687	LINE|L1|HAL1	-	chr2	231270742	231291435	ARMC9|ENST00000481520.1	+	231270742,231272954,231276635,231278381,231282058,231291352	231271072,231273078,231276775,231278458,231282133,231291435	0.918367
adrenal_gland_female_adult_53_years	chr3	169812903	169812904	169812903	-	High_confidence	6	6	9	0.422526	2.500000	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.888889
adrenal_gland_female_adult_53_years	chr6	149895954	149895962	149895954	-	High_confidence	6	8	14	0.657262	2.565448	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.928571
adrenal_gland_female_adult_53_years	chr19	46203082	46203083	46203082	-	High_confidence	219	222	223	10.469246	5.832719	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.556054
adrenal_gland_female_adult_53_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	12	12	15	0.704209	3.189898	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
adrenal_gland_female_adult_53_years	chr9	39809803	39809865	39809858	-	High_confidence	9	11	57	2.675996	4.216417	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803268	39810013	STRG.27456.2	-	39803268,39809485,39809730	39803859,39809615,39810013	0.842105
adrenal_gland_female_adult_53_years	chr14	73463608	73463634	73463608	-	RAMPAGE_only	3	3	14	0.657262	3.334679	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73275106	73458617	NUMB|ENST00000554546.5	-	73275106,73282358,73284080,73287109,73292733,73297210,73323129,73355625,73366896,73409936,73458492	73277293,73282505,73284374,73287314,73292874,73297285,73323204,73355766,73366981,73410068,73458617	0.714286
adrenal_gland_female_adult_53_years	chr11	61361734	61361740	61361734	-	High_confidence	4	4	9	0.422526	2.750000	chr11	61361566	61361746	SINE|MIR|MIR3	-	chr11	61349656	61361853	CYB561A3|ENST00000540755.5	-	61349656,61350990,61352984,61356529,61357732,61361732	61350422,61351147,61353139,61356728,61357828,61361853	0.666667
adrenal_gland_female_adult_53_years	chr17	47067498	47067534	47067498	-	High_confidence	410	451	1748	82.063863	6.194464	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.921053
adrenal_gland_female_adult_53_years	chr11	118700422	118700450	118700427	+	High_confidence	4	5	20	0.938946	4.021928	chr11	118700359	118700777	LTR|ERVL-MaLR|MLT1H	+	chr11	118700426	118708848	AP002954.1|ENST00000646572.1	+	118700426,118704607,118708381	118700643,118704838,118708848	0.850000
adrenal_gland_female_adult_53_years	chr2	27910975	27911013	27911012	+	RAMPAGE_only	9	9	51	2.394312	5.000569	chr2	27910851	27911226	LTR|ERVL-MaLR|THE1C	+	chr2	27894619	28025488	BABAM2|ENST00000604932.1	+	27894619,27929831,27987992,28025225	27894684,27929908,27988087,28025488	0.803922
adrenal_gland_female_adult_53_years	chr5	90966590	90966592	90966590	+	RAMPAGE_only	6	9	10	0.469473	3.169925	chr5	90966560	90966705	LINE|L2|L2a	-	chr5	90899182	91164216	ADGRV1|ENST00000640815.1	+	90899182,90965414,90985343,91072446,91102218,91150029,91153220,91163781	90899323,90965531,90985522,91072604,91102340,91150221,91153398,91164216	0.900000
adrenal_gland_female_adult_53_years	chr8	53523936	53523964	53523963	-	High_confidence	7	7	20	0.938946	3.932138	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.950000
adrenal_gland_female_adult_53_years	chr14	77736978	77737003	77736978	-	High_confidence	4	4	13	0.610315	2.751629	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.692308
adrenal_gland_female_adult_53_years	chr1	179294632	179294642	179294641	+	High_confidence	7	8	14	0.657262	3.378783	chr1	179294538	179294832	SINE|Alu|AluSz	-	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	1.000000
adrenal_gland_female_adult_53_years	chr5	150743280	150743306	150743280	-	High_confidence	3	3	14	0.657262	3.026987	chr5	150742837	150748950	LINE|L1|L1PA3	+	chr5	150731063	150743159	DCTN4|ENST00000521728.5	-	150731063,150731415,150733367,150742113,150742817	150731156,150731489,150733475,150742157,150743159	0.928571
adrenal_gland_female_adult_53_years	chr11	17282811	17282812	17282811	+	RAMPAGE_only	4	4	7	0.328631	2.521641	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	1.000000
adrenal_gland_female_adult_53_years	chr8	143039246	143039267	143039266	+	High_confidence	35	35	126	5.915359	5.323958	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.952381
adrenal_gland_female_adult_53_years	chr8	38151952	38151971	38151970	-	High_confidence	3	3	6	0.281684	2.584963	chr8	38151792	38151924	SINE|MIR|MIR3	-	chr8	38143648	38151265	STAR|ENST00000276449.8	-	38143648,38145221,38145962,38146288,38148199,38148640,38150754	38144386,38145315,38146147,38146447,38148327,38148754,38151265	1.000000
adrenal_gland_female_adult_53_years	chr12	42098225	42098284	42098283	-	RAMPAGE_only	5	5	21	0.985893	3.880180	chr12	42098282	42098429	SINE|MIR|MIR	+	chr12	42087144	42144712	GXYLT1|ENST00000280876.6	-	42087144,42097441,42097909,42105817,42109565,42118999,42144425	42087947,42097614,42098033,42106069,42109691,42119171,42144712	1.000000
adrenal_gland_female_adult_53_years	chr7	21618200	21618218	21618200	+	High_confidence	22	24	37	1.737050	4.614997	chr7	21618177	21618299	DNA|hAT-Blackjack|MER81	+	chr7	21618193	21636078	DNAH11|ENST00000465593.1	+	21618193,21619099,21619955,21635870	21618473,21619222,21620078,21636078	0.648649
adrenal_gland_female_adult_53_years	chr8	123202348	123202415	123202414	-	High_confidence	64	70	134	6.290937	3.556935	chr8	123202116	123202636	LINE|L2|L2b	+	chr8	123201171	123202743	FAM83A-AS1|ENST00000520576.5	-	123201171,123202207	123201982,123202743	0.977612
adrenal_gland_female_adult_53_years	chr11	112176365	112176373	112176372	+	High_confidence	83	117	244	11.455139	5.853742	chr11	112176309	112176508	LINE|L2|L2c	-	chr11	112176370	112218135	BCO2|ENST00000526088.5	+	112176370,112179277,112193473,112193878,112194652,112199698,112200612,112202022,112213723,112214761,112216219,112217760	112176458,112179482,112193697,112193994,112194755,112199827,112200773,112202190,112213861,112214926,112216330,112218135	0.930328
adrenal_gland_female_adult_53_years	chr17	19647131	19647153	19647148	-	High_confidence	52	53	193	9.060827	6.759979	chr17	19646652	19647241	LTR|ERV1|MER4-int	-	chr17	19577173	19647173	STRG.44426.2	-	19577173,19582116,19646936	19580355,19582264,19647173	0.507772
adrenal_gland_female_adult_53_years	chr12	7502483	7502540	7502503	-	High_confidence	7	10	33	1.549261	4.631616	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.939394
adrenal_gland_female_adult_53_years	chr12	113215170	113215173	113215172	+	RAMPAGE_only	8	11	14	0.657262	3.238901	chr12	113215191	113215364	SINE|MIR|MIRb	+	chr12	113221049	113267879	TPCN1|ENST00000552642.5	+	113221049,113260367,113266179,113267842	113221236,113260492,113266356,113267879	0.642857
adrenal_gland_female_adult_53_years	chr11	77129913	77129916	77129915	+	High_confidence	8	14	17	0.798104	3.572469	chr11	77129511	77129953	LINE|L2|L2b	-	chr11	77129826	77215238	STRG.33173.3	+	77129826,77130588,77142708,77147797,77155906,77156659,77156861,77157278,77158276,77159446,77160162,77160972,77162119,77162852,77166055,77172747,77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353,77197480,77198494,77199648,77201447,77202299,77203059,77204075,77205461,77206096,77207288,77208429,77208696,77211151,77211820,77212951,77213859,77214606	77129994,77130652,77142822,77147950,77156091,77156781,77157004,77157392,77158430,77159523,77160282,77161115,77162330,77162988,77166162,77172885,77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194524,77197598,77198621,77199818,77201638,77202424,77203217,77204229,77205617,77206202,77207402,77208517,77208803,77211337,77211937,77213035,77213979,77215238	1.000000
adrenal_gland_female_adult_53_years	chr6	31587007	31587014	31587009	+	High_confidence	21	36	60	2.816837	4.888928	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.950000
adrenal_gland_female_adult_53_years	chr6	28354122	28354144	28354137	-	High_confidence	10	10	20	0.938946	3.932138	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324736	28354195	ZSCAN31|ENST00000396838.6	-	28324736,28327382,28329302,28336789,28337755,28341745,28353861,28354130	28326854,28327533,28329714,28336943,28337893,28341792,28353952,28354195	0.800000
adrenal_gland_female_adult_53_years	chr20	34369392	34369421	34369420	+	RAMPAGE_only	2	3	8	0.375578	2.807355	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.875000
adrenal_gland_female_adult_53_years	chr6	26956988	26957017	26957013	+	High_confidence	2	2	8	0.375578	2.500000	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26956992	27023924	LINC00240|ENST00000606878.1	+	26956992,26968457,27023253	26957183,26968522,27023924	0.625000
adrenal_gland_female_adult_53_years	chr9	97563813	97563814	97563813	+	RAMPAGE_only	7	7	11	0.516420	3.121928	chr9	97563706	97563887	SINE|MIR|MIRc	-	chr9	97555434	97601254	TMOD1|ENST00000375175.1	+	97555434,97562731,97564037,97565847,97568893,97591290,97599633	97555711,97562821,97564168,97565955,97569037,97591435,97601254	0.818182
adrenal_gland_female_adult_53_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	23	29	31	1.455366	4.250752	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.806452
adrenal_gland_female_adult_53_years	chr12	119704554	119704574	119704554	-	RAMPAGE_only	49	51	140	6.572621	5.943569	chr12	119704528	119704734	DNA|hAT-Charlie|MER20	-	chr12	119701851	119710732	CIT|ENST00000538073.5	-	119701851,119704362,119708178,119710539	119701958,119704455,119708318,119710732	0.528571
adrenal_gland_female_adult_53_years	chr3	139344537	139344584	139344547	+	High_confidence	81	81	300	14.084187	5.667288	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.980000
adrenal_gland_female_adult_53_years	chr3	179681639	179681666	179681665	+	RAMPAGE_only	13	13	41	1.924839	4.563717	chr3	179681222	179681750	LTR|ERV1|LTR6A	-	chr3	179653692	179784406	USP13|ENST00000496897.5	+	179653692,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653750,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179784406	0.926829
adrenal_gland_female_adult_53_years	chr2	96303165	96303192	96303191	-	RAMPAGE_only	4	5	23	1.079788	3.642490	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
adrenal_gland_female_adult_53_years	chr19	20611504	20611523	20611504	+	High_confidence	148	149	365	17.135761	4.978808	chr19	20611050	20611625	LTR|ERV1|LTR61	+	chr19	20611558	20615389	AC010636.1|ENST00000598116.1	+	20611558,20615058	20611855,20615389	0.926027
adrenal_gland_female_adult_53_years	chr6	52579438	52579439	52579438	+	RAMPAGE_only	5	6	8	0.375578	2.750000	chr6	52579191	52579722	LTR|ERVL-MaLR|MLT1F1	+	chr6	52578365	52583559	TRAM2-AS1|ENST00000605910.1	+	52578365,52578501,52579374,52582862	52578393,52578594,52579609,52583559	1.000000
adrenal_gland_female_adult_53_years	chr7	143279936	143279952	143279947	+	High_confidence	5	7	20	0.938946	4.037401	chr7	143279918	143280020	SINE|MIR|MIRc	+	chr7	143279956	143287296	TMEM139|ENST00000409102.5	+	143279956,143285940,143286423	143280047,143286202,143287296	0.850000
adrenal_gland_female_adult_53_years	chr2	86482561	86482578	86482577	+	RAMPAGE_only	3	3	6	0.281684	2.584963	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.833333
adrenal_gland_female_adult_53_years	chr3	141661616	141661642	141661616	-	High_confidence	8	8	36	1.690102	4.093400	chr3	141661608	141661642	SINE|MIR|MIR3	+	chr3	141658886	141661394	STRG.12139.1	-	141658886,141661172	141660149,141661394	0.777778
adrenal_gland_female_adult_53_years	chr4	79492729	79492730	79492729	+	High_confidence	5	5	8	0.375578	2.807355	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.750000
adrenal_gland_female_adult_53_years	chr10	78977923	78977969	78977923	-	RAMPAGE_only	13	13	61	2.863785	5.660976	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943325	78962694	STRG.30511.1	-	78943325,78945911,78961898	78944747,78945989,78962694	0.540984
adrenal_gland_female_adult_53_years	chr12	95003262	95003284	95003262	-	High_confidence	5	5	9	0.422526	2.500000	chr12	95003195	95003316	SINE|MIR|MIR3	-	chr12	94971332	95003608	NDUFA12|ENST00000551991.5	-	94971332,94994169,94996903,95002738,95003594	94971620,94994257,94996976,95002821,95003608	0.888889
adrenal_gland_female_adult_53_years	chr3	129439743	129439767	129439766	-	High_confidence	2	2	6	0.281684	2.584963	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129431265	129440007	MBD4|ENST00000503197.5	-	129431265,129432555,129433097,129433849,129434061,129436442,129437719,129439729	129431578,129432606,129433247,129433984,129434136,129437308,129437950,129440007	1.000000
adrenal_gland_female_adult_53_years	chr6	28354199	28354206	28354205	-	High_confidence	10	10	20	0.938946	3.621928	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.850000
adrenal_gland_female_adult_53_years	chr18	28159167	28159168	28159167	-	High_confidence	4	4	7	0.328631	2.521641	chr18	28159142	28159517	LTR|ERVL|LTR79	+	chr18	28011917	28159297	CDH2|ENST00000413878.1	-	28011917,28013682,28147672,28159148	28011992,28013909,28147784,28159297	0.857143
adrenal_gland_female_adult_53_years	chr2	159428318	159428357	159428356	-	RAMPAGE_only	5	5	12	0.563367	3.459432	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159398842	159411996	STRG.7792.14	-	159398842,159400598,159404848,159405021,159411906	159398894,159400664,159404910,159405114,159411996	0.500000
adrenal_gland_female_adult_53_years	chrX	16712958	16712979	16712958	-	High_confidence	3	4	8	0.375578	3.000000	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16587998	16712979	CTPS2|NM_019857.4	-	16587998,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712979	0.875000
adrenal_gland_female_adult_53_years	chr5	114433510	114433511	114433510	+	High_confidence	36	36	36	1.690102	4.305497	chr5	114432499	114433929	LTR|ERV1|LTR12C	+	chr5	114433529	114496500	KCNN2|NR_103458.1	+	114433529,114463048,114473053,114486697,114487049,114493402,114495894	114433929,114463190,114473164,114486803,114487177,114493472,114496500	0.861111
adrenal_gland_female_adult_53_years	chr6	107872858	107872889	107872888	-	RAMPAGE_only	3	6	13	0.610315	3.418296	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.923077
adrenal_gland_female_adult_53_years	chr4	39319808	39319809	39319808	-	RAMPAGE_only	4	4	7	0.328631	2.584963	chr4	39319668	39319780	DNA|TcMar-Tigger|MER44B	-	chr4	39303089	39317013	RFC1|ENST00000504554.1	-	39303089,39304813,39311444,39312751,39316914	39303151,39304928,39311549,39312931,39317013	0.571429
adrenal_gland_female_adult_53_years	chr2	27773572	27773622	27773572	+	RAMPAGE_only	13	13	27	1.267577	4.134336	chr2	27773515	27773671	LINE|L2|L2c	+	chr2	27772189	27779697	MRPL33|ENST00000476552.1	+	27772189,27772673,27774423,27779432	27772385,27772692,27774530,27779697	1.000000
adrenal_gland_female_adult_53_years	chr7	107398354	107398380	107398362	-	RAMPAGE_only	5	5	15	0.704209	3.324863	chr7	107398304	107398642	DNA|hAT-Charlie|MER1B	+	chr7	107362067	107480942	COG5|ENST00000484237.5	-	107362067,107362307,107372594,107412501,107480821	107362110,107362420,107372760,107412632,107480942	0.666667
adrenal_gland_female_adult_53_years	chr4	79493376	79493389	79493377	+	High_confidence	7	9	16	0.751157	3.456565	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492592	79586752	STRG.14236.3	+	79492592,79493151,79513784,79585147	79492623,79493585,79513902,79586752	0.625000
adrenal_gland_female_adult_53_years	chr19	47227131	47227162	47227131	-	High_confidence	4	4	13	0.610315	3.238901	chr19	47227045	47227213	SINE|MIR|MIR1_Amn	-	chr19	47221644	47227189	BBC3|ENST00000598636.1	-	47221644,47226563	47221918,47227189	1.000000
adrenal_gland_female_adult_53_years	chr11	10570416	10570417	10570416	-	RAMPAGE_only	81	81	91	4.272203	5.778870	chr11	10570034	10570437	LTR|ERVL-MaLR|MLT1E2	-	chr11	10557865	10568818	LYVE1|NM_006691.3	-	10557865,10559815,10560494,10563939,10564202,10568447	10559297,10559894,10560800,10564079,10564374,10568818	0.692308
adrenal_gland_female_adult_53_years	chr3	536198	536234	536198	+	High_confidence	8	8	49	2.300417	4.517894	chr3	535186	536320	LTR|ERV1|LTR12D	-	chr3	536230	846015	LINC01266|ENST00000420823.5	+	536230,592104,750214,840714,842375	536327,592183,750250,840810,846015	0.571429
adrenal_gland_female_adult_53_years	chr2	231072218	231072227	231072226	+	RAMPAGE_only	3	3	8	0.375578	2.521641	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.875000
adrenal_gland_female_adult_53_years	chr11	72359162	72359217	72359216	-	High_confidence	5	5	19	0.891999	4.037401	chr11	72359191	72359464	LINE|L2|L2c	-	chr11	72294620	72359206	CLPB|ENST00000544382.5	-	72294620,72295491,72301802,72302303,72307198,72308526,72317105,72329706,72358879,72359137	72294693,72295648,72301964,72302348,72307254,72308604,72317220,72329804,72359008,72359206	0.894737
adrenal_gland_female_adult_53_years	chr14	102235451	102235472	102235458	-	High_confidence	16	16	51	2.394312	4.548758	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102231745	102235455	STRG.39823.10	-	102231745,102232534,102233687,102235364	102231821,102232708,102233789,102235455	0.764706
adrenal_gland_female_adult_53_years	chr19	20423688	20423704	20423703	-	High_confidence	26	37	95	4.459993	4.302299	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20405466	20423697	STRG.47997.3	-	20405466,20408949,20423480	20406132,20409045,20423697	0.821053
adrenal_gland_female_adult_53_years	chr2	231403896	231403897	231403896	+	High_confidence	21	21	25	1.173682	4.088779	chr2	231401206	231405702	LTR|ERV1|HERVE-int	+	chr2	231403901	231408788	STRG.9167.1	+	231403901,231406023	231404514,231408788	0.880000
adrenal_gland_female_adult_53_years	chr17	60887025	60887026	60887025	+	High_confidence	4	5	7	0.328631	2.807355	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	1.000000
adrenal_gland_female_adult_53_years	chr1	23417904	23417918	23417907	-	RAMPAGE_only	3	3	12	0.563367	2.732159	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.833333
adrenal_gland_female_adult_53_years	chr18	50400902	50400903	50400902	+	High_confidence	364	364	394	18.497232	6.631900	chr18	50400450	50401006	LTR|ERV1|LTR6A	+	chr18	50400910	50408592	STRG.46761.1	+	50400910,50405174	50401215,50408592	0.951777
adrenal_gland_female_adult_53_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	11	11	16	0.751157	3.500000	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.875000
adrenal_gland_female_adult_53_years	chr1	1989109	1989143	1989109	-	High_confidence	18	21	85	3.990520	5.978569	chr1	1989070	1989156	LTR|ERVL|LTR18B	+	chr1	1985145	1989129	STRG.123.3	-	1985145,1986936,1988511,1988888	1985490,1987035,1988655,1989129	0.847059
adrenal_gland_female_adult_53_years	chr19	34860633	34860644	34860633	-	High_confidence	4	5	9	0.422526	2.750000	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.666667
adrenal_gland_female_adult_53_years	chr11	321229	321258	321229	-	High_confidence	3	3	10	0.469473	2.947703	chr11	321227	321340	SINE|Alu|AluY	+	chr11	319772	321340	IFITM3|ENST00000526811.4	-	319772,320564,321223	319990,320772,321340	0.500000
adrenal_gland_female_adult_53_years	chr3	15341379	15341380	15341379	-	High_confidence	24	25	26	1.220630	4.220176	chr3	15341159	15341407	LINE|L2|L2a	+	chr3	15255649	15341368	SH3BP5|ENST00000408919.7	-	15255649,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341368	0.923077
adrenal_gland_female_adult_53_years	chr1	179877288	179877355	179877352	-	High_confidence	3	3	22	1.032840	3.746439	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179835809	179877772	STRG.3837.1	-	179835809,179846106,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179836403,179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877772	0.909091
adrenal_gland_female_adult_53_years	chrX	63809264	63809301	63809264	-	High_confidence	16	18	37	1.737050	4.437577	chrX	63809146	63809232	SINE|MIR|MIR1_Amn	-	chrX	63678495	63809274	ARHGEF9|ENST00000623417.3	-	63678495,63697124,63706257,63795515,63809202	63678572,63697304,63706449,63795576,63809274	0.864865
adrenal_gland_female_adult_53_years	chr4	169697625	169697626	169697625	+	RAMPAGE_only	9	10	10	0.469473	2.646439	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169662721	169723183	CLCN3|ENST00000504131.6	+	169662721,169663113,169663526,169680049,169687657,169689042,169690529,169692113,169695611,169697188,169703997,169706867,169713078,169719906	169662738,169663114,169663617,169680207,169687757,169689230,169690652,169692320,169695692,169697734,169704184,169707266,169713295,169723183	1.000000
adrenal_gland_female_adult_53_years	chr16	81181330	81181362	81181330	-	High_confidence	8	8	43	2.018733	4.945772	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.953488
adrenal_gland_female_adult_53_years	chr5	41425935	41425936	41425935	+	High_confidence	21	22	27	1.267577	3.305645	chr5	41425316	41427700	LINE|L1|L1MC1	-	chr5	41426045	41428622	STRG.16176.1	+	41426045,41428404	41426151,41428622	0.962963
adrenal_gland_female_adult_53_years	chr17	8196253	8196264	8196263	+	High_confidence	6	6	14	0.657262	3.093069	chr17	8196193	8196273	SINE|MIR|MIR	-	chr17	8196326	8209894	STRG.44096.1	+	8196326,8207210,8209860	8196473,8207419,8209894	0.714286
adrenal_gland_female_adult_53_years	chr3	4899724	4899725	4899724	-	RAMPAGE_only	12	12	17	0.798104	3.750000	chr3	4899705	4899891	SINE|MIR|MIRc	-	chr3	4896808	4906501	BHLHE40-AS1|NR_125914.1	-	4896808,4900540,4906375	4898935,4900697,4906501	0.647059
adrenal_gland_female_adult_53_years	chr8	42188962	42188997	42188962	-	High_confidence	4	4	15	0.704209	3.093069	chr8	42188619	42188914	SINE|Alu|AluJo	-	chr8	42184694	42188489	PLAT|ENST00000521647.1	-	42184694,42187905	42187572,42188489	0.666667
adrenal_gland_female_adult_53_years	chr5	77088079	77088109	77088108	+	High_confidence	7	7	13	0.610315	3.392747	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.538462
adrenal_gland_female_adult_53_years	chr16	87582065	87582079	87582078	+	High_confidence	7	7	19	0.891999	3.614369	chr16	87581834	87582132	LINE|L1|L1ME3A	-	chr16	87582080	87584553	STRG.43646.1	+	87582080,87584318	87582158,87584553	0.736842
adrenal_gland_female_adult_53_years	chr15	38004722	38004736	38004724	+	High_confidence	10	17	39	1.830944	3.882093	chr15	38003252	38004953	LINE|L1|L1M1	-	chr15	38004745	38025018	LINC02345|ENST00000557883.2	+	38004745,38020191,38024680	38004832,38020532,38025018	0.897436
adrenal_gland_female_adult_53_years	chr5	55982789	55982801	55982800	-	High_confidence	4	7	14	0.657262	3.378783	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	1.000000
adrenal_gland_female_adult_53_years	chrX	40263232	40263256	40263232	+	High_confidence	4	4	9	0.422526	2.500000	chrX	40263153	40263681	LTR|ERVL-MaLR|MLT1N2	-	chrX	40262965	40287720	STRG.52761.2	+	40262965,40283296,40285528	40263552,40283612,40287720	0.777778
adrenal_gland_female_adult_53_years	chr9	109806962	109806963	109806962	+	RAMPAGE_only	4	4	6	0.281684	2.584963	chr9	109806348	109807341	LINE|L2|L2a	-	chr9	109780455	110169909	PALM2-AKAP2|ENST00000302798.7	+	109780455,109867490,109880550,109923734,109925060,109931926,110015953,110136126,110156318,110168398	109780533,109867571,109880681,109923849,109925082,109932028,110016039,110138539,110156497,110169909	0.500000
adrenal_gland_female_adult_53_years	chr9	62376632	62376647	62376632	+	High_confidence	5	5	12	0.563367	3.251629	chr9	62376600	62376639	SINE|MIR|MIRb	+	chr9	62376516	62434385	FGF7P6|ENST00000452826.2	+	62376516,62432875	62376813,62434385	0.833333
adrenal_gland_female_adult_53_years	chr2	54618386	54618414	54618411	+	RAMPAGE_only	14	14	42	1.971786	4.689704	chr2	54618332	54618503	LINE|L2|L2c	-	chr2	54558393	54662308	SPTBN1|NM_178313.2	+	54558393,54599091,54612160,54616206,54617607,54618077,54621399,54622299,54623478,54624803,54625931,54628096,54628932,54629891,54630854,54632565,54637712,54642982,54644322,54645228,54645927,54646193,54647130,54648985,54649614,54653608,54655069,54655913,54657849,54659153,54659935	54558887,54599243,54612334,54616298,54617688,54618193,54621512,54622487,54623596,54624962,54626234,54628250,54629803,54630029,54631611,54632768,54637803,54643129,54644586,54645453,54646017,54646475,54647261,54649190,54649989,54653853,54655208,54655998,54658046,54659266,54662308	1.000000
adrenal_gland_female_adult_53_years	chr8	133684071	133684083	133684071	-	High_confidence	8	8	16	0.751157	2.923231	chr8	133683915	133684227	LTR|ERVL|ERV3-16A3_LTR	+	chr8	133663760	133684066	LOC105375773|NR_134462.1	-	133663760,133664701,133683968	133663933,133664975,133684066	0.687500
adrenal_gland_female_adult_53_years	chr11	17225031	17225068	17225031	+	RAMPAGE_only	5	5	15	0.704209	3.640224	chr11	17224821	17225165	LINE|L2|L2a	+	chr11	17260339	17349980	NUCB2|ENST00000646648.1	+	17260339,17269184,17276007,17282788,17295323,17296103,17301743,17309571,17310824,17311184,17311871,17312027,17315385,17330126,17330901,17337347,17349344	17260501,17269331,17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17337534,17349980	1.000000
adrenal_gland_female_adult_53_years	chr1	6820080	6820169	6820116	+	RAMPAGE_only	9	10	61	2.863785	4.420262	chr1	6819710	6820142	LINE|L1|L1MC4	-	chr1	6806987	6888201	STRG.217.2	+	6806987,6820180,6825091,6871756,6887653	6807088,6820250,6825210,6871840,6888201	0.803279
adrenal_gland_female_adult_53_years	chr13	33927458	33927460	33927459	+	RAMPAGE_only	6	9	12	0.563367	2.918296	chr13	33927241	33927709	LTR|ERV1|MER65B	-	chr13	33818068	33966558	RFC3|ENST00000434425.5	+	33818068,33821131,33823916,33825788,33829835,33830718,33831255,33835147,33966086	33818265,33821269,33823984,33825886,33830017,33830855,33831354,33835217,33966558	0.666667
adrenal_gland_female_adult_53_years	chr4	183618735	183618763	183618735	-	High_confidence	5	6	28	1.314524	4.155046	chr4	183618405	183618902	LTR|ERVL|MLT2C2	-	chr4	183557994	183618722	STRG.15619.1	-	183557994,183561835,183567217,183618647	183559458,183561898,183568323,183618722	0.535714
adrenal_gland_female_adult_53_years	chr9	104763732	104763756	104763755	+	High_confidence	4	5	10	0.469473	2.503258	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	0.900000
adrenal_gland_female_adult_53_years	chr1	1721637	1721649	1721637	-	High_confidence	3	3	8	0.375578	2.521641	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.625000
adrenal_gland_female_adult_53_years	chr7	101217578	101217599	101217578	-	High_confidence	9	11	28	1.314524	4.458591	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101211634	101217595	STRG.23456.2	-	101211634,101211845,101212252,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101211716,101211950,101212374,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217595	0.964286
adrenal_gland_female_adult_53_years	chr3	28136999	28137034	28137002	-	High_confidence	23	24	43	2.018733	4.833014	chr3	28136955	28138097	LINE|L2|L2b	-	chr3	28089241	28137003	STRG.9842.1	-	28089241,28132800,28136793	28091362,28133074,28137003	0.860465
adrenal_gland_female_adult_53_years	chr15	34588451	34588453	34588452	-	High_confidence	8	15	16	0.751157	3.056565	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.500000
adrenal_gland_female_adult_53_years	chr9	77822994	77823008	77822997	-	High_confidence	134	141	378	17.746076	6.772329	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77716171	77822997	STRG.27902.2	-	77716171,77728513,77794462,77797519,77815615,77822890	77721513,77728667,77794592,77797648,77815770,77822997	0.978836
adrenal_gland_female_adult_53_years	chr6	31400605	31400618	31400617	-	High_confidence	3	3	8	0.375578	2.521641	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31399538	31400608	STRG.19239.1	-	31399538	31400608	0.500000
adrenal_gland_female_adult_53_years	chr12	108630726	108630742	108630741	-	RAMPAGE_only	12	14	30	1.408419	4.415061	chr12	108630735	108630934	LINE|L2|L2b	+	chr12	108621894	108632078	SELPLG|NM_001206609.1	-	108621894,108631858	108624312,108632078	1.000000
adrenal_gland_female_adult_53_years	chr20	50172503	50172572	50172571	+	High_confidence	10	10	64	3.004627	5.433365	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.859375
adrenal_gland_female_adult_53_years	chr6	125219582	125219615	125219582	+	High_confidence	11	21	53	2.488206	4.678912	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.981132
adrenal_gland_female_adult_53_years	chr18	7946875	7946898	7946878	+	High_confidence	249	253	758	35.586046	6.655636	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.777045
adrenal_gland_female_adult_53_years	chr12	118138993	118139025	118139009	+	High_confidence	61	63	339	15.915131	6.846613	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.811209
adrenal_gland_female_adult_53_years	chr12	64715283	64715396	64715394	-	RAMPAGE_only	22	36	122	5.727569	5.457068	chr12	64715237	64715536	SINE|Alu|AluSx3	+	chr12	64713444	64752871	GNS|ENST00000418919.6	-	64713444,64720021,64721594,64723005,64728955,64737003,64739380,64740605,64743140,64744808,64745658,64747711,64752697	64716819,64720182,64721705,64723113,64729057,64737107,64739499,64740688,64743308,64744907,64745724,64747918,64752871	1.000000
adrenal_gland_female_adult_53_years	chr7	38789812	38789813	38789812	-	RAMPAGE_only	6	8	9	0.422526	2.750000	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	0.888889
adrenal_gland_female_adult_53_years	chr1	85379656	85379658	85379656	-	RAMPAGE_only	11	16	21	0.985893	3.932138	chr1	85379540	85379612	SINE|MIR|MIR	-	chr1	85321451	85404528	DDAH1|ENST00000633113.1	-	85321451,85324739,85350414,85351505,85358747,85404380	85321568,85324883,85350534,85351579,85358847,85404528	0.714286
adrenal_gland_female_adult_53_years	chr9	83433989	83433997	83433996	-	RAMPAGE_only	3	5	7	0.328631	2.521641	chr9	83433440	83433952	DNA|hAT-Charlie|MER1A	-	chr9	83244621	83467742	FRMD3|NM_001244960.1	-	83244621,83290602,83298747,83299111,83309535,83310484,83311886,83313659,83335515,83343189,83349678,83372912,83389603,83467617	83248516,83290727,83298816,83299186,83309624,83310548,83311975,83313747,83335639,83343287,83349757,83372955,83389708,83467742	1.000000
adrenal_gland_female_adult_53_years	chr1	88887263	88887291	88887263	-	RAMPAGE_only	1	1	8	0.375578	2.807355	chr1	88886926	88887218	SINE|Alu|AluSx1	-	chr1	88853223	88891496	GTF2B|ENST00000448623.5	-	88853223,88857372,88859881,88860139,88863980,88887260,88891482	88853346,88857487,88860011,88860286,88864114,88887367,88891496	0.875000
adrenal_gland_female_adult_53_years	chr5	32403148	32403169	32403148	-	RAMPAGE_only	8	8	22	1.032840	3.784942	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.954545
adrenal_gland_female_adult_53_years	chr6	159680997	159681086	159681019	-	RAMPAGE_only	4	5	33	1.549261	4.415458	chr6	159680968	159681092	LINE|L1|L1ME4c	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	1.000000
adrenal_gland_female_adult_53_years	chr19	54572996	54573009	54573001	+	High_confidence	14	14	26	1.220630	4.286790	chr19	54572997	54573273	SINE|Alu|AluJr	-	chr19	54572996	54587560	LILRA2|NM_006866.3	+	54572996,54573697,54574075,54574300,54574730,54575255,54575806,54587200	54573435,54573912,54574111,54574582,54575033,54575552,54576109,54587560	1.000000
adrenal_gland_female_adult_53_years	chr9	98943562	98943578	98943575	+	High_confidence	21	23	54	2.535154	5.095661	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.981481
adrenal_gland_female_adult_53_years	chr3	33838213	33838262	33838228	+	RAMPAGE_only	3	3	20	0.938946	3.932138	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.750000
adrenal_gland_female_adult_53_years	chr1	42844700	42844745	42844744	-	RAMPAGE_only	9	9	32	1.502313	4.163910	chr1	42844426	42844922	LTR|ERVL|MLT2B4	-	chr1	42841897	42846387	AL512353.1|ENST00000425076.1	-	42841897,42842774,42843403,42844510,42846256	42842013,42842916,42843450,42844610,42846387	0.906250
adrenal_gland_female_adult_53_years	chr1	16020455	16020473	16020472	-	High_confidence	3	5	9	0.422526	3.000000	chr1	16020340	16020460	SINE|MIR|MIR3	-	chr1	16014027	16019594	HSPB7|ENST00000375718.4	-	16014027,16017073,16017764,16019133	16015759,16017207,16017852,16019594	0.888889
adrenal_gland_female_adult_53_years	chr12	52043600	52043604	52043603	+	High_confidence	4	4	8	0.375578	2.500000	chr12	52043411	52043661	SINE|tRNA|LFSINE_Vert	-	chr12	52043726	52055961	NR4A1|ENST00000478250.1	+	52043726,52054326	52043911,52055961	1.000000
adrenal_gland_female_adult_53_years	chr11	60182532	60182554	60182550	-	High_confidence	8	8	27	1.267577	4.014147	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.592593
adrenal_gland_female_adult_53_years	chr2	46903031	46903064	46903048	-	RAMPAGE_only	3	3	22	1.032840	3.884184	chr2	46903002	46903353	LTR|ERVL-MaLR|THE1A	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.909091
adrenal_gland_female_adult_53_years	chr6	147131963	147132000	147131963	-	RAMPAGE_only	2	2	9	0.422526	2.947703	chr6	147131896	147132081	DNA|DNA|UCON78	+	chr6	146842565	147204540	STXBP5-AS1|ENST00000427394.5	-	146842565,146844318,146850824,146860617,146972044,147001440,147074804,147119416,147173592,147173814,147204412	146842809,146844712,146851331,146860743,146972070,147001543,147074847,147119477,147173647,147173948,147204540	0.666667
adrenal_gland_female_adult_53_years	chr12	7575270	7575288	7575283	-	RAMPAGE_only	4	4	12	0.563367	2.732159	chr12	7575005	7575582	LINE|L1|L1MB8	+	chr12	7470812	7503893	CD163|ENST00000359156.8	-	7470812,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7503644	7471397,7479996,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7503893	0.583333
adrenal_gland_female_adult_53_years	chrX	106860233	106860253	106860252	+	RAMPAGE_only	6	6	13	0.610315	3.084963	chrX	106858571	106860340	LINE|L1|L1PA15	-	chrX	106865545	106866862	TBC1D8B|ENST00000492970.2	+	106865545,106866796	106866033,106866862	0.615385
adrenal_gland_female_adult_53_years	chr10	97634098	97634113	97634108	-	High_confidence	5	7	20	0.938946	3.241446	chr10	97634006	97634308	SINE|Alu|AluJo	+	chr10	97619409	97633491	MORN4|ENST00000370635.3	-	97619409,97633346	97619683,97633491	0.800000
adrenal_gland_female_adult_53_years	chr18	65236505	65236526	65236505	+	High_confidence	4	4	9	0.422526	3.000000	chr18	65236171	65236723	LINE|RTE-BovB|MamRTE1	+	chr18	65236517	65253835	STRG.46896.1	+	65236517,65253173,65253677	65236665,65253320,65253835	0.666667
adrenal_gland_female_adult_53_years	chr10	89888015	89888038	89888037	+	RAMPAGE_only	4	4	15	0.704209	3.106891	chr10	89888002	89888814	LTR|ERV1|LTR8B	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.933333
adrenal_gland_female_adult_53_years	chr15	40389187	40389202	40389196	+	RAMPAGE_only	16	16	48	2.253470	4.722261	chr15	40389143	40389448	SINE|Alu|AluSp	-	chr15	40383254	40392023	KNSTRN|ENST00000559083.1	+	40383254,40389505,40389835,40391492,40391948	40383322,40389611,40389929,40391554,40392023	0.895833
adrenal_gland_female_adult_53_years	chr18	23576944	23576948	23576947	-	High_confidence	29	29	58	2.722943	4.494633	chr18	23576532	23578195	LTR|ERV1|LTR12C	-	chr18	23573451	23576947	NPC1|ENST00000587223.1	-	23573451,23576480	23573574,23576947	0.896552
adrenal_gland_female_adult_53_years	chrX	72305913	72305914	72305913	-	High_confidence	8	11	11	0.516420	3.095795	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	1.000000
adrenal_gland_female_adult_53_years	chr13	27445107	27445120	27445107	-	RAMPAGE_only	9	9	20	0.938946	3.584184	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	1.000000
adrenal_gland_female_adult_53_years	chr9	113387349	113387473	113387349	-	RAMPAGE_only	6	7	96	4.506940	5.797995	chr9	113387097	113387638	LINE|L2|L2a	+	chr9	113386311	113401120	ALAD|NM_001317745.1	-	113386311,113388976,113389437,113389598,113389772,113390404,113390592,113390797,113391526,113393446,113400933	113388361,113389106,113389524,113389686,113389828,113390493,113390676,113390933,113391623,113393634,113401120	1.000000
adrenal_gland_female_adult_53_years	chrX	5726116	5726325	5726324	-	High_confidence	115	128	330	15.492606	6.136749	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.551515
adrenal_gland_female_adult_53_years	chr1	16154729	16154730	16154729	-	RAMPAGE_only	8	8	9	0.422526	2.500000	chr1	16154471	16154783	SINE|Alu|AluSq2	+	chr1	16148377	16156052	EPHA2|ENST00000461614.1	-	16148377,16155847	16149047,16156052	0.666667
adrenal_gland_female_adult_53_years	chr4	102431237	102431260	102431244	-	High_confidence	15	15	81	3.802730	5.150683	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.950617
adrenal_gland_female_adult_53_years	chr11	11963884	11963969	11963884	-	RAMPAGE_only	7	8	46	2.159575	4.594301	chr11	11963694	11963925	SINE|MIR|MIRc	+	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.913043
adrenal_gland_female_adult_53_years	chr8	38151807	38151832	38151818	-	High_confidence	3	3	14	0.657262	3.378783	chr8	38151792	38151924	SINE|MIR|MIR3	-	chr8	38143648	38151265	STAR|ENST00000276449.8	-	38143648,38145221,38145962,38146288,38148199,38148640,38150754	38144386,38145315,38146147,38146447,38148327,38148754,38151265	1.000000
adrenal_gland_female_adult_53_years	chr8	141730664	141730670	141730664	-	High_confidence	5	5	10	0.469473	2.947703	chr8	141730639	141730761	SINE|MIR|MIR3	+	chr8	141730148	141730400	STRG.26638.1	-	141730148	141730400	0.600000
adrenal_gland_female_adult_53_years	chr2	201115961	201116019	201116007	+	High_confidence	8	8	37	1.737050	4.520000	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.945946
adrenal_gland_female_adult_53_years	chr5	50443255	50443259	50443258	-	High_confidence	8	10	15	0.704209	2.985228	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.600000
adrenal_gland_female_adult_53_years	chrX	48683361	48683363	48683362	+	High_confidence	44	85	85	3.990520	4.821086	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.964706
adrenal_gland_female_adult_53_years	chr7	9961015	9961074	9961073	+	High_confidence	36	39	87	4.084414	5.340940	chr7	9961015	9961170	SINE|MIR|MIR3	+	chr7	9961023	9985555	STRG.21806.1	+	9961023,9961284,9981737,9984811	9961165,9961423,9981829,9985555	0.942529
adrenal_gland_female_adult_53_years	chrX	119127811	119127814	119127813	-	High_confidence	13	19	26	1.220630	3.833270	chrX	119127624	119127833	LINE|L2|L2a	+	chrX	119078622	119127804	STRG.53856.1	-	119078622,119083014,119085382,119086545,119093666,119096493,119104991,119108336,119109075,119116495,119123581,119127726	119081504,119083120,119085546,119089746,119093775,119096691,119105147,119108471,119109202,119116664,119123652,119127804	0.961538
adrenal_gland_female_adult_53_years	chr17	2975599	2975661	2975660	+	RAMPAGE_only	4	5	25	1.173682	4.163856	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2939967	3037733	STRG.43818.2	+	2939967,2957758,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2940078,2957794,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037733	0.920000
adrenal_gland_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	56	57	60	2.816837	3.618506	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.916667
adrenal_gland_female_adult_53_years	chr3	50226714	50226734	50226714	+	High_confidence	2	2	8	0.375578	2.807355	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	0.875000
adrenal_gland_female_adult_53_years	chr7	37353636	37353646	37353636	-	High_confidence	6	6	20	0.938946	3.932138	chr7	37353223	37353900	LTR|ERV1|LTR12_	-	chr7	36852905	37353668	ELMO1|NM_001206482.1	-	36852905,36861658,36870392,36878009,36887559,36894853,37013298,37096618,37133129,37211385,37213334,37216644,37222614,37224878,37233094,37244355,37259180,37271831,37314849,37315919,37342612,37353031	36855751,36861736,36870475,36878117,36887672,36895017,37013435,37096727,37133234,37211517,37213457,37216695,37222693,37225030,37233194,37244391,37259350,37271882,37314922,37315960,37342763,37353668	0.900000
adrenal_gland_female_adult_53_years	chr1	212792424	212792445	212792444	-	High_confidence	3	3	8	0.375578	2.807355	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.750000
adrenal_gland_female_adult_53_years	chr7	88277811	88277834	88277833	-	RAMPAGE_only	4	4	13	0.610315	3.418296	chr7	88277593	88277887	SINE|Alu|AluSz6	+	chr7	88270892	88306880	STRG.23120.1	-	88270892,88280914,88282640,88283813,88290915,88306791	88279628,88281079,88283168,88284271,88291014,88306880	0.923077
adrenal_gland_female_adult_53_years	chr11	65382789	65382790	65382789	-	High_confidence	9	9	9	0.422526	2.947703	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375191	65382674	SLC25A45|NM_182556.3	-	65375191,65376817,65379375,65379866,65380131,65381914,65382485	65376675,65377076,65379561,65379938,65380175,65381969,65382674	1.000000
adrenal_gland_female_adult_53_years	chr16	11587465	11587469	11587465	-	High_confidence	3	3	9	0.422526	2.947703	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
adrenal_gland_female_adult_53_years	chr22	50757129	50757134	50757133	+	High_confidence	3	3	8	0.375578	2.521641	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.875000
adrenal_gland_female_adult_53_years	chr9	132789855	132789856	132789855	-	RAMPAGE_only	20	22	24	1.126735	3.663533	chr9	132789646	132790007	LTR|ERVL-MaLR|MLT1E2	-	chr9	132725582	132727598	AK8|ENST00000467161.1	-	132725582,132727453	132725925,132727598	0.916667
adrenal_gland_female_adult_53_years	chr1	89272843	89272883	89272867	-	High_confidence	23	23	130	6.103148	5.400199	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.984615
adrenal_gland_female_adult_53_years	chr16	30445873	30445877	30445873	-	High_confidence	65	106	167	7.840197	6.227216	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.988024
adrenal_gland_female_adult_53_years	chr14	100569582	100569603	100569582	-	High_confidence	6	7	13	0.610315	2.855389	chr14	100569527	100569624	LINE|L2|L2b	+	chr14	100538887	100569558	BEGAIN|ENST00000556188.5	-	100538887,100540495,100543857,100544999,100546500,100567910,100569426	100539315,100540579,100543965,100545066,100546662,100567939,100569558	0.923077
adrenal_gland_female_adult_53_years	chr16	29963560	29963579	29963560	+	High_confidence	3	5	12	0.563367	3.095795	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.666667
adrenal_gland_female_adult_53_years	chr5	42993223	42993261	42993238	-	High_confidence	8	9	28	1.314524	3.986188	chr5	42992907	42993217	SINE|Alu|AluSz	-	chr5	42985397	42993333	FLJ32255|NR_104643.1	-	42985397,42990838	42985662,42993333	0.928571
adrenal_gland_female_adult_53_years	chr16	21634371	21634405	21634404	-	RAMPAGE_only	7	8	25	1.173682	3.522055	chr16	21631296	21636946	LTR|ERV1|HERV9NC-int	-	chr16	21629486	21637145	STRG.42597.1	-	21629486,21636883	21630749,21637145	0.920000
adrenal_gland_female_adult_53_years	chr10	72355126	72355151	72355145	-	High_confidence	37	37	79	3.708836	5.235380	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.962025
adrenal_gland_female_adult_53_years	chr7	25579773	25579811	25579773	-	High_confidence	2	2	16	0.751157	3.189898	chr7	25579571	25579766	LTR|ERVL-MaLR|MLT1L	-	chr7	25576494	25579880	STRG.22027.2	-	25576494,25579220	25577105,25579880	0.812500
adrenal_gland_female_adult_53_years	chr1	97277898	97277923	97277922	-	RAMPAGE_only	8	9	19	0.891999	3.239098	chr1	97277442	97277974	LINE|L2|L2	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.947368
adrenal_gland_female_adult_53_years	chr1	112956793	112956815	112956793	+	High_confidence	3	3	10	0.469473	2.947703	chr1	112956705	112956908	SINE|MIR|MIR	+	chr1	112956460	112975430	SLC16A1-AS1|ENST00000428411.5	+	112956460,112960476,112968034	112957722,112960575,112975430	0.700000
adrenal_gland_female_adult_53_years	chr18	46087031	46087119	46087031	-	High_confidence	4	4	34	1.596208	4.572469	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.823529
adrenal_gland_female_adult_53_years	chr22	44181162	44181184	44181183	+	High_confidence	8	8	19	0.891999	3.176110	chr22	44181132	44181213	LINE|L2|L2a	-	chr22	44181335	44206622	PARVG|ENST00000475485.6	+	44181335,44181741,44183317,44185807,44186576,44189113,44190550,44192048,44196156,44196346,44198620,44205756,44206316	44181370,44181917,44183408,44185872,44187878,44189254,44190666,44192129,44196213,44196415,44198722,44205829,44206622	0.947368
adrenal_gland_female_adult_53_years	chr9	20658312	20658349	20658338	+	High_confidence	25	25	152	7.135988	5.569266	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658311	20770112	STRG.27176.6	+	20658311,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.888158
adrenal_gland_female_adult_53_years	chr8	133684110	133684111	133684110	-	High_confidence	6	6	6	0.281684	2.584963	chr8	133683915	133684227	LTR|ERVL|ERV3-16A3_LTR	+	chr8	133663760	133684066	LOC105375773|NR_134462.1	-	133663760,133664701,133683968	133663933,133664975,133684066	0.500000
adrenal_gland_female_adult_53_years	chr9	108885821	108885872	108885839	-	High_confidence	1083	1337	5654	265.439978	7.723648	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108867516	108885872	STRG.28458.3	-	108867516,108874894,108877994,108878622,108879445,108880051,108881704,108882124,108885767	108869182,108874970,108878149,108878750,108879557,108880165,108881765,108882187,108885872	0.972940
adrenal_gland_female_adult_53_years	chr10	118744461	118744469	118744468	-	RAMPAGE_only	5	5	11	0.516420	3.321928	chr10	118744415	118744654	LINE|L1|L1MB5	+	chr10	118676410	118755246	CACUL1|ENST00000369151.7	-	118676410,118686597,118691264,118695140,118701305,118707491,118729294,118730283,118754395	118686168,118686641,118691403,118695230,118701408,118707587,118729397,118730410,118755246	0.545455
adrenal_gland_female_adult_53_years	chr4	2860883	2860896	2860883	+	RAMPAGE_only	4	5	11	0.516420	2.646439	chr4	2860711	2860912	SINE|MIR|MIR	-	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.909091
adrenal_gland_female_adult_53_years	chr12	50924078	50924079	50924078	+	High_confidence	17	20	20	0.938946	3.184184	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	1.000000
adrenal_gland_female_adult_53_years	chr1	77532106	77532107	77532106	+	High_confidence	7	7	11	0.516420	3.121928	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.636364
adrenal_gland_female_adult_53_years	chr2	69459311	69459356	69459311	-	RAMPAGE_only	2	2	10	0.469473	2.646439	chr2	69459260	69459563	SINE|Alu|AluJb	-	chr2	69457996	69509280	AAK1|ENST00000606389.5	-	69457996,69495984,69505568,69507420,69509230	69466551,69496080,69505673,69507578,69509280	1.000000
adrenal_gland_female_adult_53_years	chr6	79631254	79631329	79631302	+	High_confidence	63	63	320	15.023133	6.252942	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.987500
adrenal_gland_female_adult_53_years	chr20	36168081	36168082	36168081	+	RAMPAGE_only	33	33	35	1.643155	3.652996	chr20	36167948	36168192	LTR?|LTR?|MamRep605	-	chr20	36173768	36229340	EPB41L1|ENST00000373941.5	+	36173768,36175550,36177951,36178629,36182271,36185116,36187675,36188346,36190276,36190621,36194211,36195328,36197858,36209487,36212271,36214359,36218875,36219760,36221863,36222277,36229331	36173954,36175715,36178056,36178672,36182347,36185335,36187763,36188499,36190374,36190797,36194360,36195364,36198041,36209898,36212376,36214440,36218962,36219844,36221944,36222394,36229340	0.942857
adrenal_gland_female_adult_53_years	chr13	24968471	24968482	24968471	-	High_confidence	2	2	9	0.422526	2.750000	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24933005	24968453	TPTE2P1|ENST00000649209.1	-	24933005,24937576,24940506,24941986,24942931,24951396,24951594,24961748,24967391,24968205	24934663,24937770,24940785,24942108,24943021,24951488,24951770,24961849,24967453,24968453	0.666667
adrenal_gland_female_adult_53_years	chr4	180123039	180123060	180123039	+	RAMPAGE_only	4	4	8	0.375578	2.750000	chr4	180122888	180123232	LTR|Gypsy?|LTR88b	+	chr4	180058905	180180590	STRG.15634.9	+	180058905,180148814,180176976,180178125	180059282,180148934,180177114,180180590	0.750000
adrenal_gland_female_adult_53_years	chr15	40894523	40894539	40894523	+	High_confidence	3	3	8	0.375578	2.807355	chr15	40894565	40894630	LINE|CR1|X6A_LINE	+	chr15	40894466	40902861	VPS18|ENST00000558474.1	+	40894466,40895937,40898906,40902615	40894859,40896079,40898998,40902861	0.750000
adrenal_gland_female_adult_53_years	chr18	22695130	22695131	22695130	+	High_confidence	93	94	106	4.976413	5.819982	chr18	22695164	22695316	SINE|MIR|MIRb	+	chr18	22695140	22703213	STRG.46459.1	+	22695140,22696216,22702907	22695192,22696881,22703213	0.547170
adrenal_gland_female_adult_53_years	chr5	150640038	150640051	150640050	+	High_confidence	231	235	758	35.586046	7.194868	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150640017	150659215	STRG.18002.2	+	150640017,150647943,150656403	150640134,150650303,150659215	0.978892
adrenal_gland_female_adult_53_years	chr2	208255750	208255770	208255750	-	High_confidence	2	2	13	0.610315	3.418296	chr2	208255694	208256010	SINE|Alu|AluJb	-	chr2	208248561	208255798	IDH1|ENST00000417583.5	-	208248561,208251429,208253885,208254938,208255528	208248660,208251567,208253959,208255059,208255798	0.769231
adrenal_gland_female_adult_53_years	chr13	113187420	113187472	113187471	-	High_confidence	12	13	45	2.112628	4.774861	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	1.000000
adrenal_gland_female_adult_53_years	chr10	65570515	65570520	65570515	+	High_confidence	4	4	11	0.516420	2.913977	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.818182
adrenal_gland_female_adult_53_years	chr1	209651130	209651167	209651135	-	High_confidence	30	31	64	3.004627	5.519455	chr1	209651125	209651277	SINE|MIR|MIR3	+	chr1	209614869	209651334	LAMB3|NM_001017402.1	-	209614869,209616470,209617409,209617906,209618451,209622535,209622981,209623504,209623839,209625647,209626866,209627382,209628034,209629736,209630614,209632582,209633069,209634446,209637907,209638533,209649963,209650916	209615407,209616624,209617586,209618048,209618659,209622680,209623179,209623725,209624000,209626026,209626978,209627579,209628190,209629925,209630735,209632776,209633133,209634638,209637981,209638648,209650118,209651334	1.000000
adrenal_gland_female_adult_53_years	chr8	22392861	22392884	22392883	+	High_confidence	3	3	12	0.563367	2.918296	chr8	22392932	22392982	LINE|L2|L2b	+	chr8	22392829	22404870	SLC39A14|ENST00000520832.1	+	22392829,22404695	22393232,22404870	0.833333
adrenal_gland_female_adult_53_years	chr19	571754	571792	571770	-	High_confidence	7	7	27	1.267577	4.032303	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.925926
adrenal_gland_female_adult_53_years	chr17	32684271	32684272	32684271	-	RAMPAGE_only	27	27	28	1.314524	4.532665	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32638774	32659451	MYO1D|ENST00000581059.5	-	32638774,32653842,32654476,32659114,32659424	32638835,32653947,32654621,32659338,32659451	0.678571
adrenal_gland_female_adult_53_years	chr4	184343887	184343968	184343907	-	RAMPAGE_only	19	26	82	3.849678	5.175687	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184334220	184347912	STRG.15654.1	-	184334220,184334526,184341952,184347712	184334419,184334611,184342053,184347912	0.621951
adrenal_gland_female_adult_53_years	chr20	18794077	18794086	18794085	+	High_confidence	10	10	24	1.126735	2.912506	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
adrenal_gland_female_adult_53_years	chr19	54617130	54617148	54617147	+	High_confidence	11	12	25	1.173682	4.293661	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	1.000000
adrenal_gland_female_adult_53_years	chr7	30756548	30756767	30756609	+	RAMPAGE_only	24	24	185	8.685249	5.784757	chr7	30756402	30756705	SINE|Alu|AluYg6	-	chr7	30752134	30757602	INMT|NM_001199219.1	+	30752134,30753733,30755421	30752304,30753938,30757602	0.989189
adrenal_gland_female_adult_53_years	chr7	43881909	43881926	43881925	-	RAMPAGE_only	3	3	13	0.610315	3.418296	chr7	43881785	43881943	LINE|L2|L2	+	chr7	43875912	43889634	URGCP|ENST00000336086.10	-	43875912,43881658,43881906,43887414	43879260,43881697,43881957,43889634	0.923077
adrenal_gland_female_adult_53_years	chr12	10363964	10363974	10363964	+	High_confidence	17	17	31	1.455366	4.444188	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.870968
adrenal_gland_female_adult_53_years	chr2	11201326	11201364	11201326	-	RAMPAGE_only	3	3	13	0.610315	3.084963	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.923077
adrenal_gland_female_adult_53_years	chr8	61578141	61578142	61578141	+	High_confidence	43	43	43	2.018733	4.235119	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	1.000000
adrenal_gland_female_adult_53_years	chr1	179302439	179302487	179302486	+	RAMPAGE_only	87	93	263	12.347137	6.062133	chr1	179302291	179302649	LTR|ERVL-MaLR|THE1D	+	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.950570
adrenal_gland_female_adult_53_years	chr8	143039459	143039466	143039465	+	High_confidence	5	6	12	0.563367	2.732159	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039294	143059942	C8orf31|ENST00000519775.2	+	143039294,143047678,143049208,143059652	143039569,143047814,143049298,143059942	0.833333
adrenal_gland_female_adult_53_years	chr10	84142659	84142745	84142744	+	RAMPAGE_only	4	5	31	1.455366	4.195816	chr10	84142771	84142861	DNA|hAT-Charlie|Charlie4z	+	chr10	84139439	84153245	GHITM|ENST00000372134.5	+	84139439,84141461,84142654,84143994,84144874,84148729,84150054,84150708,84152263	84139593,84141629,84142754,84144106,84145016,84148838,84150243,84150880,84153245	1.000000
adrenal_gland_female_adult_53_years	chr7	150325854	150325889	150325888	+	RAMPAGE_only	4	4	10	0.469473	2.947703	chr7	150325771	150325966	DNA|hAT-Charlie|Chap1_Mam	+	chr7	150322638	150332721	STRG.24507.4	+	150322638,150325840,150328634	150323212,150326010,150332721	0.800000
adrenal_gland_female_adult_53_years	chr11	47060994	47060995	47060994	+	RAMPAGE_only	12	13	14	0.657262	3.182006	chr11	47060963	47061038	LINE|L2|L2c	-	chr11	47052460	47159811	C11orf49|ENST00000526827.1	+	47052460,47137644,47155175,47157022,47157812,47159632	47052518,47137729,47155261,47157218,47157922,47159811	0.785714
adrenal_gland_female_adult_53_years	chr20	25191790	25191852	25191794	-	RAMPAGE_only	31	32	100	4.694729	5.970634	chr20	25191623	25192078	LTR|ERVL|MER70A	-	chr20	25184671	25196892	LOC101926889|NR_109994.1	-	25184671,25186541,25186896,25187852,25190217,25196622	25186160,25186699,25186979,25187947,25190302,25196892	0.900000
adrenal_gland_female_adult_53_years	chr15	58865729	58865749	58865738	-	High_confidence	34	49	98	4.600834	5.500643	chr15	58865655	58865936	LTR|ERVL|MER77	-	chr15	58863346	58865757	STRG.40840.2	-	58863346,58865413	58865284,58865757	0.897959
adrenal_gland_female_adult_53_years	chr13	36359724	36359747	36359732	-	RAMPAGE_only	3	3	13	0.610315	3.392747	chr13	36359679	36359903	SINE|MIR|MIR	+	chr13	36301651	36370136	SPART|ENST00000650221.1	-	36301651,36312144,36312318,36314226,36326574,36329361,36331398,36335020,36368873,36370088	36304632,36312235,36312477,36314421,36326698,36329517,36331596,36335832,36368990,36370136	1.000000
adrenal_gland_female_adult_53_years	chr3	39154613	39154631	39154630	-	High_confidence	3	3	7	0.328631	2.521641	chr3	39154504	39154649	LINE|L2|L2c	+	chr3	39141850	39154602	CSRNP1|NM_001320560.1	-	39141850,39144136,39144996,39146477,39154496	39144044,39144451,39145256,39146722,39154602	1.000000
adrenal_gland_female_adult_53_years	chr12	75499242	75499250	75499242	+	RAMPAGE_only	2	2	7	0.328631	2.584963	chr12	75499189	75499246	SINE|MIR|MIR	+	chr12	75480752	75505243	STRG.35845.1	+	75480752,75481833,75490405,75495576,75498693,75498823,75503903,75505197	75481054,75482079,75490518,75495662,75498720,75502000,75504074,75505243	0.857143
adrenal_gland_female_adult_53_years	chr1	116390246	116390290	116390246	+	RAMPAGE_only	9	9	22	1.032840	3.788755	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
adrenal_gland_female_adult_53_years	chr11	128896446	128896486	128896446	+	RAMPAGE_only	27	27	96	4.506940	4.684293	chr11	128896213	128896607	LINE|L1|L1MD1	-	chr11	128891468	128916853	KCNJ5|ENST00000338350.4	+	128891468,128909851,128911263,128916408	128891721,128909940,128912210,128916853	0.989583
adrenal_gland_female_adult_53_years	chr1	39026175	39026205	39026204	+	High_confidence	4	4	13	0.610315	3.188722	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.923077
adrenal_gland_female_adult_53_years	chr19	21440639	21440671	21440660	-	High_confidence	2	2	11	0.516420	2.921928	chr19	21440180	21440667	LTR|ERV1|HERV3-int	-	chr19	21433551	21440653	STRG.48067.1	-	21433551,21440414	21433947,21440653	0.909091
adrenal_gland_female_adult_53_years	chr4	184537538	184537596	184537538	-	High_confidence	14	15	107	5.023360	5.467666	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.691589
adrenal_gland_female_adult_53_years	chr8	29017535	29017536	29017535	+	RAMPAGE_only	12	12	15	0.704209	3.506891	chr8	29017457	29017772	LINE|L2|L2	-	chr8	28970435	29018899	HMBOX1|ENST00000518080.2	+	28970435,28980070,29009071,29009683,29018759	28970519,28980156,29009182,29009821,29018899	0.666667
adrenal_gland_female_adult_53_years	chr10	114698843	114698849	114698843	-	RAMPAGE_only	12	13	19	0.891999	3.787144	chr10	114698749	114699028	LINE|L1|HAL1	+	chr10	114435953	114685003	ABLIM1|ENST00000369256.6	-	114435953,114437843,114439175,114440081,114441016,114441721,114444028,114445311,114447879,114451623,114453378,114465697,114468180,114472976,114473878,114485296,114487957,114491790,114545004,114547649,114571296,114575415,114601826,114684289	114436373,114437924,114439250,114440089,114441077,114441786,114444134,114445403,114448026,114451671,114453483,114465827,114468216,114473132,114473956,114485380,114488016,114491878,114545098,114547776,114571406,114575599,114601961,114685003	0.684211
adrenal_gland_female_adult_53_years	chr19	45099711	45099723	45099722	+	High_confidence	7	7	14	0.657262	3.664498	chr19	45099644	45099739	LINE|L2|L2c	+	chr19	45100063	45141386	PPP1R37|ENST00000544897.5	+	45100063,45138513,45140235,45140505,45141321	45100280,45138611,45140281,45140606,45141386	0.714286
adrenal_gland_female_adult_53_years	chr2	96342286	96342309	96342301	+	RAMPAGE_only	2	2	8	0.375578	2.521641	chr2	96342343	96342558	SINE|MIR|MIR	+	chr2	96335817	96373815	NCAPH|ENST00000455200.5	+	96335817,96341391,96342049,96342755,96343165,96344104,96351830,96353305,96354182,96359044,96360142,96360587,96364480,96365875,96367256,96368971,96369424,96373291	96335848,96341894,96342140,96342848,96343304,96344229,96352020,96353397,96354388,96359193,96360249,96360710,96364591,96366058,96367373,96369063,96369500,96373815	0.625000
adrenal_gland_female_adult_53_years	chr7	64992034	64992038	64992034	-	RAMPAGE_only	8	12	20	0.938946	3.642150	chr7	64990915	64999343	LTR|ERV1|HERV3-int	-	chr7	64990808	64999430	STRG.22680.9	-	64990808,64999120	64993414,64999430	0.950000
adrenal_gland_female_adult_53_years	chr6	70394883	70394884	70394883	+	High_confidence	23	23	23	1.079788	3.174886	chr6	70394625	70395013	LTR|ERV1|MER48	+	chr6	70394886	70399417	AL365226.2|ENST00000418403.1	+	70394886,70395229,70399214	70395043,70395266,70399417	1.000000
adrenal_gland_female_adult_53_years	chr12	93773408	93773438	93773411	+	RAMPAGE_only	97	120	394	18.497232	6.077281	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.850254
adrenal_gland_female_adult_53_years	chr20	44600465	44600474	44600465	+	RAMPAGE_only	5	7	12	0.563367	3.022055	chr20	44600101	44600563	LINE|L2|L2	-	chr20	44614307	44619037	PKIG|ENST00000349959.3	+	44614307,44618284	44614707,44619037	1.000000
adrenal_gland_female_adult_53_years	chr18	12653084	12653098	12653097	-	High_confidence	9	10	27	1.267577	3.873141	chr18	12653065	12653265	DNA|hAT-Charlie|MER20	+	chr18	12506495	12653085	SPIRE1|ENST00000449797.5	-	12506495,12512453,12535475,12546673,12635061,12653000	12506641,12512531,12535601,12546904,12635096,12653085	0.888889
adrenal_gland_female_adult_53_years	chr2	154678676	154678736	154678703	-	RAMPAGE_only	10	10	33	1.549261	4.538910	chr2	154678542	154678955	LTR|ERVL|MLT2B4	-	chr2	154675994	154676269	STRG.7702.1	-	154675994	154676269	0.969697
adrenal_gland_female_adult_53_years	chr3	12994728	12994734	12994733	-	High_confidence	6	6	12	0.563367	3.022055	chr3	12994635	12994703	SINE|MIR|MIRc	-	chr3	12908348	12994384	IQSEC1|ENST00000648386.1	-	12908348,12909272,12911628,12913427,12915103,12915593,12920429,12922119,12924580,12935447,12941570,12994080	12908525,12909434,12911728,12913553,12915133,12915733,12920596,12922242,12924742,12936697,12941865,12994384	1.000000
adrenal_gland_female_adult_53_years	chr11	65181239	65181297	65181239	+	High_confidence	8	8	44	2.065681	4.376003	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.977273
adrenal_gland_female_adult_53_years	chr1	113759894	113759900	113759898	-	High_confidence	5	8	18	0.845051	3.381580	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.500000
adrenal_gland_female_adult_53_years	chrX	40263355	40263378	40263364	+	High_confidence	6	7	26	1.220630	4.053661	chrX	40263153	40263681	LTR|ERVL-MaLR|MLT1N2	-	chrX	40262965	40287720	STRG.52761.2	+	40262965,40283296,40285528	40263552,40283612,40287720	0.807692
adrenal_gland_female_adult_53_years	chr16	85322727	85322730	85322729	+	RAMPAGE_only	3	5	8	0.375578	2.500000	chr16	85322608	85322915	SINE|Alu|AluSx1	-	chr16	85357462	85359449	GSE1|ENST00000568080.1	+	85357462,85359341	85357643,85359449	0.625000
adrenal_gland_female_adult_53_years	chr19	39839801	39839821	39839801	-	High_confidence	18	18	40	1.877892	4.634184	chr19	39839431	39839808	LINE|L2|L2a	-	chr19	39834457	39840441	FBL|ENST00000595545.5	-	39834457,39836555,39837710,39839034,39840232,39840413	39834813,39836668,39837843,39839205,39840327,39840441	1.000000
adrenal_gland_female_adult_53_years	chr19	7893595	7893601	7893595	+	High_confidence	14	14	27	1.267577	4.254525	chr19	7893546	7893832	SINE|Alu|AluSg	-	chr19	7893595	7898808	LRRC8E|ENST00000593511.1	+	7893595,7895598,7898660	7893859,7895741,7898808	0.740741
adrenal_gland_female_adult_53_years	chr4	21544656	21544692	21544670	-	High_confidence	32	39	119	5.586728	5.280669	chr4	21544311	21544682	LTR|ERVL-MaLR|MLT1E2	-	chr4	20728615	21544656	KCNIP4|NM_001035004.1	-	20728615,20732005,20732680,20734627,20749661,20758820,20850542,21544389	20730129,20732068,20732785,20734735,20749732,20758890,20850667,21544656	0.655462
adrenal_gland_female_adult_53_years	chr3	194486609	194486631	194486609	-	High_confidence	2	2	7	0.328631	2.584963	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194403464	194486659	STRG.12903.1	-	194403464,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194486659	0.857143
adrenal_gland_female_adult_53_years	chr10	63594814	63594847	63594846	+	RAMPAGE_only	3	3	12	0.563367	3.418296	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	1.000000
adrenal_gland_female_adult_53_years	chr2	38515659	38515666	38515659	-	High_confidence	2	4	9	0.422526	2.500000	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.888889
adrenal_gland_female_adult_53_years	chr2	95121537	95121558	95121537	-	High_confidence	7	9	23	1.079788	3.823068	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.826087
adrenal_gland_female_adult_53_years	chr7	134432378	134432443	134432378	-	High_confidence	30	32	156	7.323777	4.996328	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.858974
adrenal_gland_female_adult_53_years	chr3	143824540	143824541	143824540	-	RAMPAGE_only	4	4	6	0.281684	2.584963	chr3	143824344	143824714	LINE|L2|L2a	+	chr3	143265221	143848531	SLC9A9|ENST00000316549.10	-	143265221,143268874,143363483,143382059,143467036,143493652,143495334,143552361,143574087,143578584,143652254,143693191,143795000,143796825,143832018,143848147	143266929,143268980,143363563,143382114,143467190,143493764,143495448,143552450,143574193,143578723,143652360,143693307,143795077,143796903,143832221,143848531	0.500000
adrenal_gland_female_adult_53_years	chr14	94109676	94109696	94109676	+	RAMPAGE_only	31	31	69	3.239363	5.418201	chr14	94109433	94109807	LTR|ERV1|MER65B	-	chr14	94110732	94116698	IFI27|ENST00000616764.4	+	94110732,94110925,94111624,94114850,94115780,94116441	94110797,94110978,94111773,94114880,94115942,94116698	0.913043
adrenal_gland_female_adult_53_years	chr9	89479889	89479890	89479889	-	High_confidence	15	16	16	0.751157	3.373557	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89402924	89479890	SEMA4D|ENST00000540475.5	-	89402924,89405350,89455887,89479571	89403016,89405699,89455953,89479890	0.937500
adrenal_gland_female_adult_53_years	chr8	128069008	128069009	128069008	+	RAMPAGE_only	5	5	7	0.328631	2.521641	chr8	128068865	128069026	LINE|L1|L1ME4c	+	chr8	127890627	128101253	PVT1|ENST00000513868.6	+	127890627,127939507,127983903,127989161,128070159,128096517,128099369,128100979	127890998,127939676,127984204,127989291,128070272,128096654,128099573,128101253	1.000000
adrenal_gland_female_adult_53_years	chr4	38942037	38942038	38942037	-	High_confidence	38	41	52	2.441259	4.616175	chr4	38941874	38942233	LTR|ERVL-MaLR|THE1B	-	chr4	38941342	38942028	STRG.13757.1	-	38941342,38941957	38941668,38942028	0.500000
adrenal_gland_female_adult_53_years	chr6	43025307	43025321	43025307	+	High_confidence	4	4	9	0.422526	2.947703	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.555556
adrenal_gland_female_adult_53_years	chr8	141023508	141023552	141023551	+	High_confidence	13	15	60	2.816837	4.508888	chr8	141023560	141023716	DNA|hAT-Tip100|MER45C	+	chr8	141023525	141032887	STRG.26623.1	+	141023525,141028483,141032613	141023629,141028698,141032887	0.950000
adrenal_gland_female_adult_53_years	chr4	158167223	158167224	158167223	-	High_confidence	9	10	12	0.563367	3.277613	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158127544	158167212	FAM198B|ENST00000592586.1	-	158127544,158130785,158155610,158167176	158127614,158131012,158155825,158167212	0.583333
adrenal_gland_female_adult_53_years	chrX	49879172	49879175	49879174	-	High_confidence	4	7	8	0.375578	2.521641	chrX	49879073	49879252	DNA|hAT-Charlie|MER5B	-	chrX	49876723	49879241	USP27X-AS1|ENST00000437322.2	-	49876723,49879090	49878747,49879241	0.875000
adrenal_gland_female_adult_53_years	chr13	52236223	52236228	52236227	-	RAMPAGE_only	4	7	12	0.563367	3.277613	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219343	52325605	TPTE2P2|ENST00000605924.5	-	52219343,52221735,52223238,52227004,52229325,52233063,52235219,52253744,52253936,52279840,52280651,52280861,52283237,52289821,52291506,52297765,52308245,52309195,52323279,52323829,52324065,52325539	52219630,52221806,52223331,52227096,52229431,52233144,52235281,52253833,52254018,52279905,52280715,52280961,52283357,52289983,52291557,52297828,52308299,52309249,52323388,52323969,52324167,52325605	0.583333
adrenal_gland_female_adult_53_years	chr5	80407139	80407149	80407148	+	High_confidence	4	4	8	0.375578	3.000000	chr5	80406956	80407268	SINE|Alu|AluJr	-	chr5	80408012	80479869	ZFYVE16|NM_001105251.2	+	80408012,80411645,80434108,80436755,80439935,80443122,80445262,80448025,80449590,80450430,80451484,80455691,80456460,80456944,80459413,80472760,80473753,80474662,80477218	80408153,80411773,80434217,80439007,80440032,80443284,80445405,80448404,80449713,80450586,80451709,80455774,80456565,80457092,80459494,80472923,80473859,80474830,80479869	1.000000
adrenal_gland_female_adult_53_years	chr1	20028404	20028408	20028407	+	High_confidence	5	6	11	0.516420	2.646439	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028429	20091158	PLA2G5|ENST00000465698.5	+	20028429,20059631,20068872,20084820,20086082,20088824,20089788,20090567	20028709,20059692,20069032,20084870,20086227,20088943,20089895,20091158	0.909091
adrenal_gland_female_adult_53_years	chr9	68975842	68975855	68975842	-	High_confidence	74	78	206	9.671142	5.796154	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.587379
adrenal_gland_female_adult_53_years	chr11	17282902	17282925	17282902	+	RAMPAGE_only	2	2	11	0.516420	3.095795	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.818182
adrenal_gland_female_adult_53_years	chr15	40264411	40264418	40264411	+	RAMPAGE_only	6	6	12	0.563367	3.251629	chr15	40264251	40264457	LINE|L1|L1M5	-	chr15	40253183	40277487	PAK6|ENST00000542403.3	+	40253183,40264780,40265841,40272223,40272865,40273345,40273550,40274141,40275926,40277115	40253289,40264989,40266495,40272721,40272999,40273472,40273676,40274276,40276105,40277487	1.000000
adrenal_gland_female_adult_53_years	chr8	128049543	128049569	128049543	+	RAMPAGE_only	3	3	10	0.469473	2.725481	chr8	128049515	128049731	LTR|ERVL|LTR33	+	chr8	127890627	128101253	PVT1|ENST00000513868.6	+	127890627,127939507,127983903,127989161,128070159,128096517,128099369,128100979	127890998,127939676,127984204,127989291,128070272,128096654,128099573,128101253	0.800000
adrenal_gland_female_adult_53_years	chr1	166850123	166850125	166850123	+	RAMPAGE_only	6	10	12	0.563367	3.095795	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.916667
adrenal_gland_female_adult_53_years	chr1	225818507	225818527	225818526	+	RAMPAGE_only	5	7	12	0.563367	2.918296	chr1	225818246	225818555	LINE|L2|L2b	-	chr1	225825300	225845563	EPHX1|NM_000120.3	+	225825300,225828724,225831778,225838653,225839216,225839828,225842365,225844497,225845145	225825544,225828912,225831959,225838881,225839346,225840037,225842474,225844623,225845563	1.000000
adrenal_gland_female_adult_53_years	chr4	55947965	55947972	55947965	-	High_confidence	3	3	9	0.422526	2.947703	chr4	55947862	55947994	LTR|ERV1|MER51D	-	chr4	55938489	55947964	STRG.13960.1	-	55938489,55940516,55947839	55938955,55940632,55947964	0.555556
adrenal_gland_female_adult_53_years	chr14	81170392	81170420	81170419	-	High_confidence	15	15	99	4.647782	5.413158	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81165299	81170415	STRG.39435.1	-	81165299,81170108	81165381,81170415	0.747475
adrenal_gland_female_adult_53_years	chr1	1655392	1655411	1655410	-	RAMPAGE_only	5	6	12	0.563367	2.855389	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.833333
adrenal_gland_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	189	191	191	8.966932	5.293714	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.905759
adrenal_gland_female_adult_53_years	chr7	64991435	64991480	64991435	-	RAMPAGE_only	6	7	30	1.408419	4.307355	chr7	64990915	64999343	LTR|ERV1|HERV3-int	-	chr7	64990808	64999430	STRG.22680.9	-	64990808,64999120	64993414,64999430	0.866667
adrenal_gland_female_adult_53_years	chr4	123895040	123895065	123895059	+	High_confidence	6	6	16	0.751157	2.973557	chr4	123895108	123895406	LTR|ERVL-MaLR|MSTD	+	chr4	123894734	123934968	STRG.14843.2	+	123894734,123925183,123930247,123934570	123895002,123925337,123931004,123934968	0.937500
adrenal_gland_female_adult_53_years	chr20	45833293	45833313	45833293	-	High_confidence	67	78	181	8.497459	4.543393	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.961326
adrenal_gland_female_adult_53_years	chr1	244815758	244815772	244815771	+	High_confidence	5	5	9	0.422526	2.947703	chr1	244815533	244815948	LTR|ERV1|MER41A	+	chr1	244815792	244816318	STRG.4941.1	+	244815792	244816318	0.777778
adrenal_gland_female_adult_53_years	chr16	21637018	21637037	21637036	-	High_confidence	3	3	6	0.281684	2.584963	chr16	21636946	21637915	LTR|ERV1|LTR12D	-	chr16	21629486	21637145	STRG.42597.1	-	21629486,21636883	21630749,21637145	1.000000
adrenal_gland_female_adult_53_years	chr1	97904654	97904676	97904675	-	RAMPAGE_only	5	5	12	0.563367	3.188722	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.583333
adrenal_gland_female_adult_53_years	chr16	29963060	29963080	29963060	+	High_confidence	6	6	11	0.516420	2.921928	chr16	29962944	29963068	SINE|MIR|MIRc	+	chr16	29963171	29973048	TMEM219|ENST00000570255.5	+	29963171,29963399,29968024,29971407,29972041,29972949	29963308,29963589,29968254,29971578,29972140,29973048	0.909091
adrenal_gland_female_adult_53_years	chr5	997298	997319	997318	-	High_confidence	9	9	46	2.159575	5.030633	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.978261
adrenal_gland_female_adult_53_years	chr4	123894705	123894770	123894758	+	High_confidence	102	119	392	18.403338	6.557070	chr4	123894654	123894827	SINE|Alu|AluYc	-	chr4	123894734	123934968	STRG.14843.1	+	123894734,123924096,123925183,123930247,123934570	123895002,123924200,123925337,123931004,123934968	0.961735
adrenal_gland_female_adult_53_years	chr19	48868595	48868631	48868595	-	High_confidence	230	236	1136	53.332121	7.579017	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.993838
adrenal_gland_female_adult_53_years	chr10	59707189	59707201	59707194	-	RAMPAGE_only	13	13	29	1.361471	4.148794	chr10	59707053	59707198	SINE|Alu|AluJb	+	chr10	59650763	59709891	SLC16A9|NM_001323981.1	-	59650763,59653674,59664226,59672769,59684095,59707105,59709478	59652950,59654589,59664322,59672913,59684327,59707188,59709891	0.931034
adrenal_gland_female_adult_53_years	chr11	128897155	128897172	128897155	+	RAMPAGE_only	8	8	17	0.798104	3.175123	chr11	128897093	128897397	SINE|Alu|AluSx	-	chr11	128891468	128916853	KCNJ5|ENST00000338350.4	+	128891468,128909851,128911263,128916408	128891721,128909940,128912210,128916853	1.000000
adrenal_gland_female_adult_53_years	chr3	151766778	151766781	151766780	+	High_confidence	101	132	146	6.854304	5.965616	chr3	151766184	151766973	LINE|L1|L1MC3	-	chr3	151766791	151784894	STRG.12290.1	+	151766791,151770507,151775694,151783831	151766854,151770611,151775764,151784894	0.671233
adrenal_gland_female_adult_53_years	chr1	150765957	150765958	150765957	-	High_confidence	7	7	7	0.328631	2.521641	chr1	150765956	150766249	SINE|Alu|AluJr	+	chr1	150730195	150765957	CTSS|NM_004079.4	-	150730195,150747776,150750005,150751780,150755000,150757857,150764637,150765697	150733145,150747879,150750171,150752008,150755150,150757980,150764764,150765957	1.000000
adrenal_gland_female_adult_53_years	chr1	110897839	110897857	110897856	+	RAMPAGE_only	4	5	8	0.375578	2.750000	chr1	110897898	110898002	SINE|MIR|MIR	+	chr1	110894308	110899851	CD53|ENST00000497404.1	+	110894308,110894959,110899123	110894401,110895055,110899851	1.000000
adrenal_gland_female_adult_53_years	chr1	115925778	115925810	115925809	+	High_confidence	4	4	10	0.469473	2.641604	chr1	115925646	115925834	SINE|tRNA-RTE|MamSINE1	+	chr1	115925856	115931852	STRG.2727.1	+	115925856,115930887,115931325	115925982,115930983,115931852	0.900000
adrenal_gland_female_adult_53_years	chr12	104030726	104030727	104030726	+	High_confidence	59	59	75	3.521047	5.647357	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.933333
adrenal_gland_female_adult_53_years	chr18	34709342	34709389	34709342	+	High_confidence	13	17	52	2.441259	4.828905	chr18	34709150	34709395	LINE|L2|L2c	-	chr18	34709355	34812056	DTNA|ENST00000585446.1	+	34709355,34794036,34806218,34811958	34709517,34794250,34806304,34812056	0.538462
adrenal_gland_female_adult_53_years	chr13	49495602	49495633	49495602	+	High_confidence	2	2	12	0.563367	3.418296	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495609	49528992	PHF11|NM_001040443.2	+	49495609,49506634,49513058,49518017,49520893,49522042,49523174,49524084,49526386,49528510	49496095,49506756,49513166,49518151,49520940,49522107,49523241,49524216,49526458,49528992	1.000000
adrenal_gland_female_adult_53_years	chr11	14337110	14337142	14337123	-	High_confidence	5	5	21	0.985893	3.784184	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.571429
adrenal_gland_female_adult_53_years	chr4	173369526	173369534	173369526	-	High_confidence	5	5	12	0.563367	3.277613	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.583333
adrenal_gland_female_adult_53_years	chrX	16712932	16712933	16712932	-	High_confidence	6	6	9	0.422526	2.947703	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	1.000000
adrenal_gland_female_adult_53_years	chr5	27472270	27472284	27472270	+	High_confidence	4	4	9	0.422526	2.947703	chr5	27472073	27472487	LTR|ERV1|MER61C	+	chr5	27472291	27496401	PURPL|ENST00000510165.5	+	27472291,27475534,27477638,27494234,27495948	27472519,27475695,27477801,27494335,27496401	1.000000
adrenal_gland_female_adult_53_years	chr1	77129077	77129078	77129077	+	High_confidence	583	709	727	34.130680	5.738279	chr1	77128993	77129084	DNA|hAT-Charlie|MER58B	+	chr1	77129113	77129668	AC113935.1|ENST00000471722.1	+	77129113	77129668	0.896836
adrenal_gland_female_adult_53_years	chr1	33021438	33021456	33021438	-	RAMPAGE_only	4	4	8	0.375578	2.750000	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.875000
adrenal_gland_female_adult_53_years	chr7	6590246	6590286	6590246	+	High_confidence	7	7	42	1.971786	4.505752	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.928571
adrenal_gland_female_adult_53_years	chr7	100546545	100546557	100546556	-	High_confidence	69	73	161	7.558514	5.411392	chr7	100546543	100546611	LINE|L2|L2c	+	chr7	100543461	100546649	STRG.23419.1	-	100543461,100546407	100543632,100546649	0.944099
adrenal_gland_female_adult_53_years	chr11	66729276	66729303	66729279	-	High_confidence	4	4	18	0.845051	3.175123	chr11	66729233	66729349	SINE|MIR|MIRb	-	chr11	66715353	66729226	SPTBN2|ENST00000527010.1	-	66715353,66715829,66721083,66728740	66715395,66715981,66721262,66729226	0.944444
adrenal_gland_female_adult_53_years	chr17	2667195	2667196	2667195	+	High_confidence	7	8	10	0.469473	2.947703	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.900000
adrenal_gland_female_adult_53_years	chr10	19768175	19768205	19768204	+	RAMPAGE_only	5	5	15	0.704209	3.640224	chr10	19768143	19768495	LTR|ERV1|LTR23	+	chr10	19816238	20289856	PLXDC2|ENST00000377252.4	+	19816238,20001774,20046868,20068169,20143294,20147783,20164467,20176998,20177327,20211668,20217425,20219063,20245344,20279702	19817191,20001986,20047015,20068239,20143417,20147902,20164567,20177094,20177409,20211729,20217576,20219102,20245505,20289856	1.000000
adrenal_gland_female_adult_53_years	chr9	33393832	33393883	33393832	-	High_confidence	5	5	25	1.173682	4.053661	chr9	33393691	33394003	LINE|L2|L2b	+	chr9	33385505	33394176	AQP7|ENST00000447660.3	-	33385505,33386076,33386403,33393796	33385866,33386195,33386541,33394176	0.520000
adrenal_gland_female_adult_53_years	chr22	49657461	49657487	49657483	-	High_confidence	7	7	25	1.173682	3.625815	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49414523	49657504	C22orf34|ENST00000414287.5	-	49414523,49416601,49416814,49440875,49657404	49416035,49416735,49416928,49441212,49657504	0.600000
adrenal_gland_female_adult_53_years	chr3	45034833	45034850	45034840	+	RAMPAGE_only	11	11	28	1.314524	4.363713	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	0.928571
adrenal_gland_female_adult_53_years	chr9	134373102	134373108	134373102	+	High_confidence	12	15	25	1.173682	4.022055	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134373019	134440585	STRG.29112.3	+	134373019,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134373180,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440585	0.720000
adrenal_gland_female_adult_53_years	chr15	92678199	92678213	92678212	-	RAMPAGE_only	5	6	11	0.516420	3.027169	chr15	92678051	92678466	LTR|ERVL-MaLR|MSTC	-	chr15	92619182	92668043	FAM174B|ENST00000557480.5	-	92619182,92630213,92667897	92619459,92630345,92668043	0.909091
adrenal_gland_female_adult_53_years	chr13	52570323	52570324	52570323	+	RAMPAGE_only	6	6	8	0.375578	2.500000	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.625000
adrenal_gland_female_adult_53_years	chr16	8870907	8870929	8870907	-	RAMPAGE_only	2	2	8	0.375578	2.521641	chr16	8870671	8870950	SINE|Alu|AluJb	+	chr16	8852941	8869012	CARHSP1|NM_014316.3	-	8852941,8858349,8859170,8868965	8855326,8858472,8859335,8869012	0.875000
adrenal_gland_female_adult_53_years	chr9	92536651	92536704	92536651	-	High_confidence	16	18	73	3.427152	5.206257	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.931507
adrenal_gland_female_adult_53_years	chr18	28159275	28159297	28159296	-	High_confidence	29	29	43	2.018733	4.211751	chr18	28159142	28159517	LTR|ERVL|LTR79	+	chr18	28011917	28159297	CDH2|ENST00000413878.1	-	28011917,28013682,28147672,28159148	28011992,28013909,28147784,28159297	0.837209
adrenal_gland_female_adult_53_years	chr1	20639966	20639976	20639966	+	RAMPAGE_only	4	4	10	0.469473	2.947703	chr1	20640002	20640112	LINE|L2|L2b	+	chr1	20638128	20651316	PINK1|ENST00000492302.1	+	20638128,20644489,20645559,20648504,20650433	20639992,20644672,20645723,20649231,20651316	0.900000
adrenal_gland_female_adult_53_years	chr1	153967486	153967512	153967486	+	High_confidence	14	18	54	2.535154	5.129435	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.648148
adrenal_gland_female_adult_53_years	chr4	4269605	4269614	4269609	-	High_confidence	8	8	23	1.079788	2.703559	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.913043
adrenal_gland_female_adult_53_years	chr9	125538282	125538302	125538282	+	High_confidence	169	176	271	12.722716	5.532682	chr9	125538091	125538491	LINE|L2|L2	-	chr9	125538215	125542394	STRG.28822.1	+	125538215,125539336,125541134	125538364,125539449,125542394	0.955720
adrenal_gland_female_adult_53_years	chr9	111784059	111784062	111784061	-	High_confidence	3	5	8	0.375578	2.807355	chr9	111783697	111784151	LTR|ERVL|MER70A	-	chr9	111775790	111783937	STRG.28556.1	-	111775790,111780929,111783798	111775975,111781017,111783937	0.625000
adrenal_gland_female_adult_53_years	chr1	20685285	20685320	20685297	-	High_confidence	34	52	201	9.436405	6.735799	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.820896
adrenal_gland_female_adult_53_years	chr12	124867502	124867513	124867512	-	RAMPAGE_only	8	9	15	0.704209	3.521641	chr12	124867318	124867919	LINE|L1|L1MB7	+	chr12	124782682	124880461	SCARB1|ENST00000535005.5	-	124782682,124786356,124787405,124795194,124800123,124807760,124810173,124811869,124814201,124814972,124817549,124866988,124880169	124782811,124786503,124787457,124795268,124800242,124807927,124810289,124811965,124814405,124815114,124817707,124867137,124880461	0.533333
adrenal_gland_female_adult_53_years	chr14	35294442	35294467	35294442	+	RAMPAGE_only	4	4	14	0.657262	3.521641	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	0.928571
adrenal_gland_female_adult_53_years	chr1	231422748	231422749	231422748	-	RAMPAGE_only	12	12	15	0.704209	3.128085	chr1	231422714	231422871	SINE|MIR|MIRb	-	chr1	231363750	231425044	EGLN1|ENST00000366641.3	-	231363750,231367568,231370561,231373979,231420997	231366475,231367636,231370698,231374099,231425044	0.933333
adrenal_gland_female_adult_53_years	chr12	91362308	91362337	91362319	+	High_confidence	18	18	38	1.783997	4.523986	chr12	91362362	91362457	DNA|hAT-Tip100|MamTip2	+	chr12	91362195	91368606	AC025035.1|ENST00000551571.1	+	91362195,91367930	91362413,91368606	1.000000
adrenal_gland_female_adult_53_years	chr4	118835953	118835954	118835953	-	High_confidence	15	15	15	0.704209	3.640224	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	1.000000
adrenal_gland_female_adult_53_years	chr2	86482600	86482628	86482627	+	RAMPAGE_only	2	2	6	0.281684	2.584963	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.833333
adrenal_gland_female_adult_53_years	chr5	173809113	173809149	173809113	-	High_confidence	4	4	20	0.938946	3.070847	chr5	173808847	173809163	SINE|Alu|AluJb	+	chr5	173786927	173809152	STRG.18298.1	-	173786927,173787688,173790635,173790808,173808729	173787247,173787745,173790727,173790924,173809152	0.900000
adrenal_gland_female_adult_53_years	chr3	49415422	49415458	49415422	+	RAMPAGE_only	2	2	12	0.563367	2.550341	chr3	49415234	49415524	SINE|Alu|AluSg	+	chr3	49412205	49416476	TCTA|NM_022171.2	+	49412205,49413055,49414819	49412640,49413110,49416476	0.916667
adrenal_gland_female_adult_53_years	chr11	93532530	93532558	93532557	-	RAMPAGE_only	3	3	13	0.610315	3.392747	chr11	93532369	93532643	LTR|ERVL|MLT2B3	+	chr11	93478940	93537915	SMCO4|ENST00000527149.5	-	93478940,93499275,93537845	93479269,93499348,93537915	0.538462
adrenal_gland_female_adult_53_years	chr19	48637343	48637379	48637367	-	High_confidence	40	40	95	4.459993	5.437837	chr19	48637310	48637367	LINE|L1|X9_LINE	+	chr19	48633085	48637363	DBP|ENST00000601104.1	-	48633085,48635579,48636855	48633655,48635990,48637363	1.000000
adrenal_gland_female_adult_53_years	chr18	80148048	80148049	80148048	+	High_confidence	15	16	17	0.798104	3.852169	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.705882
adrenal_gland_female_adult_53_years	chr16	14511329	14511345	14511329	-	RAMPAGE_only	2	2	7	0.328631	2.584963	chr16	14511277	14511448	SINE|tRNA-RTE|MamSINE1	+	chr16	14446956	14501689	PARN|ENST00000564882.5	-	14446956,14482637,14501552	14447081,14482827,14501689	0.857143
adrenal_gland_female_adult_53_years	chr19	9709659	9709660	9709659	+	High_confidence	10	10	10	0.469473	2.921928	chr19	9709309	9709779	LTR|ERV1|LTR10A	+	chr19	9709673	9719743	STRG.47460.1	+	9709673,9719542	9709992,9719743	0.700000
adrenal_gland_female_adult_53_years	chr20	56367400	56367745	56367400	+	RAMPAGE_only	20	21	224	10.516193	5.444629	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	1.000000
adrenal_gland_female_adult_53_years	chr11	108224074	108224075	108224074	+	High_confidence	7	7	8	0.375578	2.521641	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.750000
adrenal_gland_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	145	145	154	7.229883	4.566156	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.967532
adrenal_gland_female_adult_53_years	chr6	2990740	2990755	2990748	-	High_confidence	105	158	405	19.013652	4.598843	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989428	2990758	STRG.18563.1	-	2989428,2990670	2990011,2990758	0.977778
adrenal_gland_female_adult_53_years	chr11	128889915	128889916	128889915	+	RAMPAGE_only	8	8	8	0.375578	2.500000	chr11	128889763	128890002	LTR?|LTR?|MamRep605	+	chr11	128891355	128921035	KCNJ5|ENST00000529694.5	+	128891355,128911263,128916408	128891721,128912210,128921035	1.000000
adrenal_gland_female_adult_53_years	chr13	106561950	106561951	106561950	-	High_confidence	11	11	11	0.516420	3.027169	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.909091
adrenal_gland_female_adult_53_years	chr2	232890994	232891005	232890999	-	High_confidence	12	14	43	2.018733	4.963746	chr2	232890857	232891264	LINE|L2|L2c	+	chr2	232878687	232890980	STRG.9221.3	-	232878687,232881145,232882185,232883310,232883980,232885279,232888032,232890933	232879679,232881250,232882265,232883466,232884144,232885369,232888107,232890980	0.930233
adrenal_gland_female_adult_53_years	chr12	643627	643636	643635	-	High_confidence	21	21	46	2.159575	4.597083	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.543478
adrenal_gland_female_adult_53_years	chr11	60182444	60182445	60182444	-	High_confidence	8	8	11	0.516420	2.921928	chr11	60182383	60182456	SINE|MIR|MIRb	-	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.636364
adrenal_gland_female_adult_53_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	32	32	57	2.675996	3.979180	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.982456
adrenal_gland_female_adult_53_years	chr14	102235398	102235417	102235416	-	High_confidence	4	4	9	0.422526	2.947703	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102226139	102235424	MOK|ENST00000561150.5	-	102226139,102232534,102233687,102235364	102226408,102232671,102233789,102235424	0.555556
adrenal_gland_female_adult_53_years	chr12	15163701	15163711	15163710	+	High_confidence	4	4	11	0.516420	3.027169	chr12	15163550	15163797	LTR|ERVL|LTR33A	-	chr12	15163332	15173595	STRG.34739.1	+	15163332,15168627,15168842,15169506,15171067	15163829,15168760,15168955,15169628,15173595	0.818182
adrenal_gland_female_adult_53_years	chr6	118651542	118651593	118651563	-	High_confidence	43	43	244	11.455139	6.733942	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.967213
adrenal_gland_female_adult_53_years	chr7	155952034	155952057	155952056	+	High_confidence	7	9	26	1.220630	4.056021	chr7	155951984	155952147	SINE|MIR|MIR3	-	chr7	155951838	155966343	STRG.24601.2	+	155951838,155964451	155952408,155966343	0.692308
adrenal_gland_female_adult_53_years	chr7	90463190	90463212	90463211	+	RAMPAGE_only	6	6	12	0.563367	3.418296	chr7	90463115	90463485	LTR|ERVL-MaLR|THE1C	+	chr7	90466423	90790628	CDK14|ENST00000449528.5	+	90466423,90479227,90494366,90563734,90604217,90726566,90747680,90790572	90466513,90479274,90494430,90563863,90604249,90726812,90747775,90790628	0.916667
adrenal_gland_female_adult_53_years	chr5	147188432	147188484	147188471	-	RAMPAGE_only	2	2	10	0.469473	3.121928	chr5	147188358	147188647	LTR|Gypsy|MamGypLTR1a	+	chr5	147183288	147234924	STRG.17899.1	-	147183288,147196758,147201976,147234712	147184429,147196835,147202151,147234924	0.700000
adrenal_gland_female_adult_53_years	chr11	67886471	67886535	67886471	+	High_confidence	8	8	38	1.783997	4.229327	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.973684
adrenal_gland_female_adult_53_years	chr7	112452385	112452419	112452418	+	High_confidence	27	31	119	5.586728	5.269568	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112477203	IFRD1|NM_001197079.1	+	112452057,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112452511,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112477203	0.957983
adrenal_gland_female_adult_53_years	chr5	133089604	133089678	133089676	+	RAMPAGE_only	4	7	34	1.596208	4.829966	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
adrenal_gland_female_adult_53_years	chr19	5680205	5680252	5680248	-	High_confidence	15	15	60	2.816837	4.759513	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.966667
adrenal_gland_female_adult_53_years	chr3	150736585	150736601	150736585	-	RAMPAGE_only	5	7	10	0.469473	3.121928	chr3	150736563	150736695	DNA|hAT-Charlie|MER5B	+	chr3	150734470	150738985	LOC101928105|NR_121657.1	-	150734470,150736341,150738850	150734864,150736515,150738985	0.900000
adrenal_gland_female_adult_53_years	chr12	79873253	79873267	79873266	-	High_confidence	6	6	13	0.610315	3.334679	chr12	79873243	79873519	DNA|hAT-Charlie|Charlie1a	+	chr12	79828370	79872872	PPP1R12A|ENST00000548318.1	-	79828370,79832331,79845301,79848787,79872807	79828464,79832491,79845420,79848931,79872872	1.000000
adrenal_gland_female_adult_53_years	chr15	85433962	85433963	85433962	+	RAMPAGE_only	8	11	11	0.516420	3.095795	chr15	85433963	85439965	LINE|L1|L1PA2	+	chr15	85380728	85745610	AKAP13|ENST00000361243.6	+	85380728,85485709,85521427,85533583,85543771,85575130,85578929,85585701,85639373,85645817,85655416,85662387,85664562,85669721,85682157,85684740,85693276,85708018,85710578,85715787,85717289,85718006,85719075,85721990,85722229,85723071,85726409,85727065,85727380,85730512,85734991,85735559,85736089,85740221,85741045,85743491,85744627	85380798,85485753,85521575,85533880,85543955,85575329,85582107,85585823,85639449,85645954,85655787,85662453,85664755,85669830,85682212,85684873,85693451,85708086,85710645,85715923,85717402,85718159,85719326,85722116,85722347,85723320,85726486,85727247,85727463,85730707,85735150,85735630,85736134,85740272,85741495,85743825,85745610	1.000000
adrenal_gland_female_adult_53_years	chr12	53251630	53251654	53251633	+	High_confidence	8	10	35	1.643155	4.629004	chr12	53251547	53251701	SINE|MIR|MIRc	-	chr12	53251652	53253752	MFSD5|ENST00000551660.2	+	53251652,53252817	53252035,53253752	1.000000
adrenal_gland_female_adult_53_years	chr12	15001807	15001839	15001838	+	High_confidence	30	38	145	6.807357	5.870894	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.813793
adrenal_gland_female_adult_53_years	chr17	77390290	77390291	77390290	+	RAMPAGE_only	8	9	12	0.563367	2.751629	chr17	77390212	77390366	SINE|Alu|AluYc	+	chr17	77400557	77402579	SEPT9|ENST00000590825.1	+	77400557,77402058	77400590,77402579	0.916667
adrenal_gland_female_adult_53_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	8	8	11	0.516420	3.321928	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.545455
adrenal_gland_female_adult_53_years	chr3	177037427	177037474	177037473	+	High_confidence	4	4	18	0.845051	3.852169	chr3	177037351	177037772	LTR|ERVL|MLT2B1	+	chr3	177037404	177047892	TBL1XR1-AS1|ENST00000617758.1	+	177037404,177038361,177044896,177047633	177037744,177038450,177044996,177047892	0.777778
adrenal_gland_female_adult_53_years	chr17	32479860	32479861	32479860	+	High_confidence	6	6	9	0.422526	2.947703	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.888889
adrenal_gland_female_adult_53_years	chr19	44914321	44914322	44914321	+	High_confidence	347	353	450	21.126281	6.129367	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.840000
adrenal_gland_female_adult_53_years	chr10	30999472	30999520	30999519	-	High_confidence	27	30	79	3.708836	5.753226	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.518987
adrenal_gland_female_adult_53_years	chr19	48589072	48589077	48589076	+	High_confidence	5	5	11	0.516420	2.846439	chr19	48588603	48589545	LINE|L2|L2a	-	chr19	48589082	48599423	STRG.48935.1	+	48589082,48591608,48592721,48596738,48599134	48589195,48591735,48592816,48596919,48599423	0.909091
adrenal_gland_female_adult_53_years	chrX	35890901	35890915	35890901	+	RAMPAGE_only	4	4	8	0.375578	2.500000	chrX	35890725	35891088	LTR|ERVL|LTR41	+	chrX	35919733	35990147	CFAP47|ENST00000297866.9	+	35919733,35926016,35941282,35948313,35951130,35951802,35953591,35955960,35966564,35967618,35970767,35971585,35971868,35975146,35975671,35989318	35920048,35926168,35941398,35948452,35951359,35951963,35953719,35956196,35966754,35967832,35970923,35971772,35971965,35975363,35975913,35990147	0.875000
adrenal_gland_female_adult_53_years	chr19	7635818	7635831	7635818	-	RAMPAGE_only	12	19	62	2.910732	4.759951	chr19	7635792	7635861	DNA|hAT-Blackjack|MER81	+	chr19	7631614	7633748	PCP2|ENST00000311069.5	-	7631614,7632392,7632715,7633406	7631808,7632517,7632830,7633748	0.919355
adrenal_gland_female_adult_53_years	chr2	27893866	27893943	27893866	+	High_confidence	104	104	371	17.417445	5.988590	chr2	27893713	27894016	SINE|Alu|AluSc	+	chr2	27894544	28233315	BABAM2|ENST00000379629.7	+	27894544,27929831,27987992,28025225,28045724,28129270,28233142	27894684,27929908,27988087,28025420,28045799,28129380,28233315	0.956873
adrenal_gland_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	1286	1522	2541	119.293064	5.116723	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.987013
adrenal_gland_female_adult_53_years	chr9	20694517	20694518	20694517	+	RAMPAGE_only	15	15	15	0.704209	3.506891	chr9	20694323	20694599	DNA|hAT-Charlie|Charlie15b	-	chr9	20684239	20770112	STRG.27176.8	+	20684239,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20684293,20715410,20717868,20720534,20740340,20758191,20765073,20770112	1.000000
adrenal_gland_female_adult_53_years	chr1	196715635	196715660	196715651	+	RAMPAGE_only	3	3	13	0.610315	3.026987	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	1.000000
adrenal_gland_female_adult_53_years	chr2	3536827	3536879	3536845	-	High_confidence	19	19	144	6.760410	6.149541	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.847222
adrenal_gland_female_adult_53_years	chr3	27821492	27821502	27821492	+	RAMPAGE_only	3	3	9	0.422526	3.000000	chr3	27815983	27821983	LINE|L1|L1PA7	-	chr3	27802761	27860327	LINC01980|ENST00000425195.6	+	27802761,27824649,27848700,27860086	27802850,27824748,27848764,27860327	0.777778
adrenal_gland_female_adult_53_years	chr4	95000465	95000481	95000480	+	RAMPAGE_only	16	16	32	1.502313	3.921938	chr4	95000399	95000534	SINE|Alu|AluSc	+	chr4	94996231	95154673	BMPR1B|ENST00000512312.5	+	94996231,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547	94996384,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95154673	0.937500
adrenal_gland_female_adult_53_years	chr8	29024056	29024115	29024114	+	RAMPAGE_only	3	3	13	0.610315	2.751629	chr8	29023977	29024124	LINE|L1|L1MC5a	-	chr8	29051017	29064764	HMBOX1|ENST00000522468.1	+	29051017,29063881,29064175	29051163,29063963,29064764	0.615385
adrenal_gland_female_adult_53_years	chrX	103517474	103517478	103517474	-	RAMPAGE_only	14	15	23	1.079788	4.055958	chrX	103517347	103517455	SINE|MIR|MIR3	-	chrX	103437173	103437729	STRG.53674.1	-	103437173	103437729	0.652174
adrenal_gland_female_adult_53_years	chr7	102973265	102973291	102973265	-	High_confidence	20	20	41	1.924839	4.875146	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102883571	102973219	FBXL13|ENST00000477915.5	-	102883571,102884213,102913085,102926273,102963532,102968021,102973149	102883685,102884312,102913215,102926374,102963665,102968117,102973219	0.682927
adrenal_gland_female_adult_53_years	chr5	150118757	150118840	150118788	-	RAMPAGE_only	2	2	15	0.704209	3.807355	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113836	150125520	STRG.17987.6	-	150113836,150115150,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444	150115099,150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125520	0.933333
adrenal_gland_female_adult_53_years	chr16	2757798	2757817	2757798	+	High_confidence	2	2	10	0.469473	3.121928	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
adrenal_gland_female_adult_53_years	chrX	147937510	147937561	147937510	+	RAMPAGE_only	2	2	11	0.516420	3.277613	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.54190.6	+	147940580,147943130,147944868,147945533,147948733	147940662,147943326,147945051,147945616,147950315	1.000000
adrenal_gland_female_adult_53_years	chr6	26474340	26474346	26474345	+	RAMPAGE_only	20	20	41	1.924839	3.777567	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26476110	26476531	STRG.19002.1	+	26476110	26476531	0.853659
adrenal_gland_female_adult_53_years	chr22	36481305	36481353	36481334	-	High_confidence	20	24	127	5.962306	4.680612	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.866142
adrenal_gland_female_adult_53_years	chr17	58535641	58535646	58535641	-	RAMPAGE_only	3	3	8	0.375578	2.500000	chr17	58535378	58535602	LINE|CR1|L3	-	chr17	58520249	58532084	SEPT4|NM_080416.3	-	58520249,58520742,58520997,58521253,58521544,58521735,58521966,58525077,58525694,58526219,58526681,58531960	58520485,58520842,58521160,58521350,58521646,58521853,58522101,58525201,58525781,58526313,58526978,58532084	0.750000
adrenal_gland_female_adult_53_years	chr22	18149848	18149869	18149868	+	High_confidence	24	24	69	3.239363	4.783511	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
adrenal_gland_female_adult_53_years	chr5	78549168	78549185	78549184	-	High_confidence	14	14	28	1.314524	3.878783	chr5	78548966	78549452	LTR|ERVL-MaLR|MLT1H	-	chr5	78485214	78549151	LHFPL2|ENST00000515007.6	-	78485214,78509783,78549025	78489153,78510398,78549151	0.857143
adrenal_gland_female_adult_53_years	chr11	77175226	77175303	77175226	+	High_confidence	33	34	129	6.056200	5.545732	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.992248
adrenal_gland_female_adult_53_years	chr20	44532558	44532570	44532569	+	High_confidence	49	53	74	3.474099	5.544653	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531915	44624247	PKIG|ENST00000372887.5	+	44531915,44582584,44589796,44614533,44623932	44531978,44582731,44589866,44614707,44624247	0.554054
adrenal_gland_female_adult_53_years	chr2	127082979	127082988	127082987	-	High_confidence	5	7	12	0.563367	2.732159	chr2	127082958	127083081	LINE|L1|L1MC4	-	chr2	127048022	127082065	BIN1|NM_001320634.1	-	127048022,127050420,127050801,127059010,127062114,127063570,127063932,127068923,127069994,127070552,127070761,127076625,127081831	127048633,127050522,127050912,127059155,127062197,127063646,127064018,127069031,127070090,127070647,127070816,127076706,127082065	0.750000
adrenal_gland_female_adult_53_years	chr19	46413426	46413612	46413611	-	High_confidence	62	62	390	18.309443	6.619613	chr19	46413579	46413731	LTR|Gypsy|LTR104_Mam	-	chr19	46410378	46413564	CCDC8|ENST00000307522.4	-	46410378	46413564	0.989744
adrenal_gland_female_adult_53_years	chr22	23700746	23700804	23700803	-	RAMPAGE_only	16	16	35	1.643155	4.453189	chr22	23700074	23701270	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.885714
adrenal_gland_female_adult_53_years	chr1	21329462	21329497	21329462	-	RAMPAGE_only	5	5	17	0.798104	3.327820	chr1	21329434	21329646	SINE|MIR|MIRb	+	chr1	21217246	21345504	ECE1|ENST00000415912.6	-	21217246,21221746,21225249,21227158,21227930,21233557,21235849,21236745,21238133,21244988,21247220,21255946,21257524,21258692,21260270,21272698,21279190,21290069,21345375	21220131,21221842,21225440,21227226,21228041,21233661,21235927,21236844,21238244,21245103,21247363,21256138,21257590,21258839,21260392,21272911,21279332,21290156,21345504	0.941176
adrenal_gland_female_adult_53_years	chr20	44600431	44600432	44600431	+	RAMPAGE_only	6	7	7	0.328631	2.584963	chr20	44600101	44600563	LINE|L2|L2	-	chr20	44614307	44619037	PKIG|ENST00000349959.3	+	44614307,44618284	44614707,44619037	0.857143
adrenal_gland_female_adult_53_years	chr1	226939240	226939248	226939247	+	High_confidence	3	4	7	0.328631	2.521641	chr1	226939237	226939309	DNA|hAT-Charlie|Charlie18a	-	chr1	226940236	226987545	ADCK3|NM_020247.4	+	226940236,226961376,226964999,226965670,226977448,226982026,226982677,226982893,226983551,226983760,226984093,226984547,226984875,226985253,226986452	226940399,226961562,226965410,226965737,226977523,226982149,226982763,226983034,226983633,226983854,226984235,226984655,226984941,226985340,226987545	0.571429
adrenal_gland_female_adult_53_years	chr1	64506588	64506611	64506588	+	High_confidence	5	5	11	0.516420	2.921928	chr1	64506404	64506597	SINE|MIR|MIR	-	chr1	64505900	64693040	CACHD1|ENST00000650260.1	+	64505900,64550593,64582155,64602805,64629354,64632598,64634043,64641819,64647800,64652160,64653757,64654685,64658704,64663694,64664497,64666056,64671563,64673157,64673347,64675400,64675896,64676894,64678158,64679594,64681257,64682004,64691322	64506487,64550656,64582304,64602912,64629481,64632743,64634260,64641969,64648034,64652310,64653881,64654803,64658873,64663837,64664679,64666167,64671686,64673257,64673464,64675561,64675983,64677011,64678310,64679756,64681335,64682106,64693040	0.545455
adrenal_gland_female_adult_53_years	chr20	44685303	44685335	44685303	-	RAMPAGE_only	6	6	38	1.783997	4.704511	chr20	44685068	44685316	SINE|MIR|MIRb	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.789474
adrenal_gland_female_adult_53_years	chrX	5726383	5726387	5726383	-	High_confidence	10	10	21	0.985893	3.286629	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5719178	5726371	STRG.52429.1	-	5719178,5725929	5719872,5726371	0.904762
adrenal_gland_female_adult_53_years	chr8	30653987	30653995	30653987	-	RAMPAGE_only	3	3	9	0.422526	2.947703	chr8	30653838	30654118	SINE|Alu|AluJb	+	chr8	30607103	30657005	GTF2E2|ENST00000518599.5	-	30607103,30612298,30614607,30635031,30653432,30656868	30607150,30612481,30614715,30635123,30653602,30657005	1.000000
adrenal_gland_female_adult_53_years	chr3	129559620	129559645	129559620	-	High_confidence	12	12	24	1.126735	4.053509	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	0.958333
adrenal_gland_female_adult_53_years	chr9	98943483	98943484	98943483	+	High_confidence	15	16	17	0.798104	3.750000	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.941176
adrenal_gland_female_adult_53_years	chr2	47369479	47369492	47369479	+	High_confidence	42	45	194	9.107774	6.535318	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369147	47387028	EPCAM|NM_002354.2	+	47369147,47373462,47373807,47375233,47377013,47378952,47379768,47385165,47386571	47369581,47373570,47374048,47375299,47377077,47379054,47379969,47385210,47387028	0.969072
adrenal_gland_female_adult_53_years	chr9	108885661	108885685	108885671	-	High_confidence	4	5	15	0.704209	3.640224	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108867516	108885872	STRG.28458.3	-	108867516,108874894,108877994,108878622,108879445,108880051,108881704,108882124,108885767	108869182,108874970,108878149,108878750,108879557,108880165,108881765,108882187,108885872	1.000000
adrenal_gland_female_adult_53_years	chr15	93863033	93863066	93863065	+	High_confidence	11	11	42	1.971786	5.064869	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863030	93867575	STRG.41746.1	+	93863030,93865373,93867399	93863216,93865648,93867575	0.500000
adrenal_gland_female_adult_53_years	chr5	38934371	38934448	38934447	+	RAMPAGE_only	5	5	23	1.079788	3.202546	chr5	38934435	38934553	LINE|L2|L2b	+	chr5	38845998	38935641	OSMR|ENST00000274276.7	+	38845998,38869031,38876200,38881592,38883826,38885348,38886038,38903881,38904352,38917545,38918839,38921614,38923149,38924421,38925203,38931882,38932462,38932871	38846387,38869117,38876373,38881764,38884111,38885484,38886190,38904024,38904503,38917622,38919062,38921794,38923254,38924595,38925371,38931964,38932535,38935641	0.956522
adrenal_gland_female_adult_53_years	chr5	172896675	172896717	172896710	+	RAMPAGE_only	4	4	16	0.751157	3.139572	chr5	172896579	172896710	DNA|hAT-Charlie|Charlie8	-	chr5	172906059	172926563	ERGIC1|ENST00000519567.5	+	172906059,172909666,172914713,172924004,172926508	172906180,172909761,172914838,172924109,172926563	0.500000
adrenal_gland_female_adult_53_years	chr20	35307090	35307091	35307090	-	High_confidence	6	6	6	0.281684	2.584963	chr20	35306926	35307046	SINE|MIR|MIR3	-	chr20	35302565	35307082	UQCC1|ENST00000472559.5	-	35302565,35306665	35304069,35307082	1.000000
adrenal_gland_female_adult_53_years	chr19	55280218	55280251	55280218	-	High_confidence	8	9	22	1.032840	3.001609	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.909091
adrenal_gland_female_adult_53_years	chr11	71999605	71999627	71999614	+	High_confidence	42	93	338	15.868184	5.439398	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.970414
adrenal_gland_female_adult_53_years	chrX	40263420	40263444	40263420	+	High_confidence	2	2	10	0.469473	3.121928	chrX	40263153	40263681	LTR|ERVL-MaLR|MLT1N2	-	chrX	40262965	40287720	STRG.52761.4	+	40262965,40283440	40263552,40287720	0.900000
adrenal_gland_female_adult_53_years	chr6	168093055	168093063	168093055	-	High_confidence	12	12	29	1.361471	3.699028	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.931034
adrenal_gland_female_adult_53_years	chr7	150325933	150325934	150325933	+	RAMPAGE_only	11	11	15	0.704209	3.521641	chr7	150325771	150325966	DNA|hAT-Charlie|Chap1_Mam	+	chr7	150322638	150332721	STRG.24507.4	+	150322638,150325840,150328634	150323212,150326010,150332721	0.800000
adrenal_gland_female_adult_53_years	chr19	17556545	17556557	17556545	+	High_confidence	4	4	9	0.422526	2.947703	chr19	17556574	17556631	SINE|MIR|MIR	+	chr19	17556560	17568577	COLGALT1|ENST00000600474.1	+	17556560,17559310,17560347,17567405,17568508	17556679,17559421,17560465,17567540,17568577	0.666667
adrenal_gland_female_adult_53_years	chr9	14678065	14678066	14678065	-	RAMPAGE_only	4	4	7	0.328631	2.521641	chr9	14678056	14678165	LINE|L2|L2c	+	chr9	14677365	14693265	ZDHHC21|ENST00000497966.1	-	14677365,14680032,14683570,14690336,14693228	14677472,14680162,14683729,14690385,14693265	0.571429
adrenal_gland_female_adult_53_years	chr17	50108033	50108034	50108033	+	High_confidence	13	13	15	0.704209	2.788450	chr17	50107994	50108062	LTR|ERVL-MaLR|MLT1J	-	chr17	50108007	50109984	PDK2|ENST00000506647.1	+	50108007,50108611,50109286,50109956	50108417,50108719,50109400,50109984	0.666667
adrenal_gland_female_adult_53_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	118	119	119	5.586728	5.089447	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.991597
adrenal_gland_female_adult_53_years	chr7	30179130	30179141	30179130	-	High_confidence	10	10	39	1.830944	4.733870	chr7	30179124	30179307	SINE|MIR|MIRb	+	chr7	30176386	30179014	AC007036.1|ENST00000430537.1	-	30176386,30178936	30176982,30179014	0.769231
adrenal_gland_female_adult_53_years	chr12	100410606	100410621	100410617	+	High_confidence	7	7	15	0.704209	3.664498	chr12	100410510	100410676	SINE|Alu|AluSx1	+	chr12	100410620	100420089	SLC17A8|ENST00000552697.1	+	100410620,100412769,100418028,100419814	100410699,100412880,100418156,100420089	0.533333
adrenal_gland_female_adult_53_years	chr12	109053951	109053957	109053951	-	High_confidence	17	17	45	2.112628	4.400615	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.888889
adrenal_gland_female_adult_53_years	chr19	46180850	46180863	46180850	-	High_confidence	5	5	17	0.798104	2.586888	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46163892	46180647	AC006262.2|ENST00000599127.1	-	46163892,46164577,46173933,46179485,46180604	46164216,46164651,46174052,46179537,46180647	0.705882
adrenal_gland_female_adult_53_years	chr16	58421272	58421292	58421272	+	High_confidence	2	2	8	0.375578	2.807355	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421223	58440183	STRG.43165.1	+	58421223,58433809,58435691,58437155	58421385,58433948,58435823,58440183	0.500000
adrenal_gland_female_adult_53_years	chr8	16186271	16186277	16186271	-	High_confidence	16	20	36	1.690102	4.631293	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.750000
adrenal_gland_female_adult_53_years	chr3	149222077	149222078	149222077	-	High_confidence	5	5	8	0.375578	2.500000	chr3	149222056	149222177	LINE|L2|L2b	+	chr3	149172498	149222055	CP|ENST00000264613.10	-	149172498,149176249,149177839,149178414,149179555,149182004,149183465,149185238,149186519,149188051,149198366,149199711,149202101,149206167,149207362,149209210,149210166,149212450,149221646	149173730,149176412,149177979,149178631,149179662,149182133,149183605,149185446,149186732,149188202,149198578,149199864,149202241,149206339,149207617,149209384,149210379,149212698,149222055	1.000000
adrenal_gland_female_adult_53_years	chrX	15404901	15404904	15404901	-	RAMPAGE_only	24	28	43	2.018733	4.324271	chrX	15404835	15405042	SINE|tRNA-RTE|MamSINE1	+	chrX	15384798	15407653	PIR|ENST00000492432.5	-	15384798,15390184,15397448,15407505	15385116,15390251,15397531,15407653	0.860465
adrenal_gland_female_adult_53_years	chrX	153352034	153352176	153352175	+	RAMPAGE_only	7	7	61	2.863785	4.710650	chrX	153352175	153352240	LTR|ERVL-MaLR|MLT1M	+	chrX	153334154	153352926	ZNF275|ENST00000370251.3	+	153334154,153336633,153345519,153346818,153347753	153334285,153336710,153345621,153347655,153352926	0.967213
adrenal_gland_female_adult_53_years	chr12	10363706	10363707	10363706	+	High_confidence	6	6	9	0.422526	2.750000	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.888889
adrenal_gland_female_adult_53_years	chr12	108630676	108630705	108630676	-	RAMPAGE_only	6	6	10	0.469473	3.121928	chr12	108630567	108630719	SINE|MIR|MIRc	+	chr12	108621894	108632078	SELPLG|NM_001206609.1	-	108621894,108631858	108624312,108632078	1.000000
adrenal_gland_female_adult_53_years	chr3	114759249	114759277	114759276	-	High_confidence	22	22	39	1.830944	4.714647	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.820513
adrenal_gland_female_adult_53_years	chr7	102973321	102973391	102973321	+	High_confidence	101	101	286	13.426925	5.763127	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973436	102978667	NFE4|ENST00000638942.1	+	102973436,102975890,102978380	102973771,102976230,102978667	0.846154
adrenal_gland_female_adult_53_years	chr4	39627120	39627121	39627120	-	High_confidence	24	24	26	1.220630	3.938722	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.884615
adrenal_gland_female_adult_53_years	chr8	2726962	2726968	2726962	+	High_confidence	6	6	10	0.469473	2.921928	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.600000
adrenal_gland_female_adult_53_years	chr9	111783898	111783960	111783917	-	High_confidence	16	16	87	4.084414	5.484506	chr9	111783697	111784151	LTR|ERVL|MER70A	-	chr9	111686518	111783499	C9orf84|NM_173521.4	-	111686518,111691550,111693798,111694230,111699953,111702104,111703880,111705246,111706567,111707854,111713099,111714444,111718183,111722408,111723791,111727632,111738279,111741475,111746233,111748091,111756324,111758083,111758694,111775790,111780929,111783387	111686870,111692511,111693948,111694362,111700047,111702226,111703992,111705364,111706746,111707924,111713172,111714623,111718288,111722585,111723911,111728049,111738522,111741570,111746342,111748199,111756478,111758195,111758848,111775975,111781017,111783499	0.942529
adrenal_gland_female_adult_53_years	chr2	227534973	227535007	227534973	+	RAMPAGE_only	2	2	13	0.610315	3.084963	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.923077
adrenal_gland_female_adult_53_years	chr20	37298760	37298761	37298760	+	RAMPAGE_only	17	17	17	0.798104	3.146286	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
adrenal_gland_female_adult_53_years	chr22	50330763	50330774	50330773	+	RAMPAGE_only	3	3	7	0.328631	2.584963	chr22	50330753	50331068	LTR|ERVL-MaLR|MLT1D	+	chr22	50343303	50445090	PPP6R2|ENST00000359139.7	+	50343303,50372019,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439697,50439960,50440821,50443865,50444202	50343550,50372150,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50445090	0.571429
adrenal_gland_female_adult_53_years	chr2	182030747	182030774	182030747	+	High_confidence	4	6	15	0.704209	3.378783	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.933333
adrenal_gland_female_adult_53_years	chr2	240022172	240022280	240022172	-	RAMPAGE_only	8	9	82	3.849678	3.290005	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
adrenal_gland_female_adult_53_years	chrX	16712878	16712890	16712889	-	High_confidence	6	6	16	0.751157	3.750000	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	1.000000
adrenal_gland_female_adult_53_years	chr8	19094411	19094417	19094416	+	RAMPAGE_only	8	8	16	0.751157	3.875000	chr8	19094270	19094435	SINE|MIR|MIRc	-	chr8	19091732	19115024	AC100849.2|ENST00000518324.1	+	19091732,19095446,19114884	19091888,19095669,19115024	0.812500
adrenal_gland_female_adult_53_years	chr1	16208435	16208453	16208452	-	High_confidence	3	3	14	0.657262	3.026987	chr1	16208394	16208524	SINE|MIR|MIRc	+	chr1	16204810	16208440	STRG.460.2	-	16204810,16205086,16205537,16205930,16206179,16206947,16207521,16207674,16207943	16204919,16205425,16205667,16206083,16206340,16207210,16207598,16207777,16208440	0.857143
adrenal_gland_female_adult_53_years	chr17	355346	355381	355380	+	High_confidence	12	13	35	1.643155	4.764858	chr17	355237	355620	LTR|ERVL-MaLR|MLT1K	+	chr17	355374	358127	STRG.43789.1	+	355374,356702,358048	355469,357540,358127	0.914286
adrenal_gland_female_adult_53_years	chr8	119875413	119875416	119875414	+	RAMPAGE_only	3	8	10	0.469473	2.947703	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.900000
adrenal_gland_female_adult_53_years	chr22	42643939	42643971	42643939	-	High_confidence	3	3	16	0.751157	2.952820	chr22	42643895	42644038	SINE|MIR|MIR	-	chr22	42617839	42644509	CYB5R3|ENST00000361740.8	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644509	1.000000
adrenal_gland_female_adult_53_years	chr21	33968445	33968467	33968463	-	High_confidence	7	7	22	1.032840	3.916127	chr21	33968191	33968612	LTR|ERVL-MaLR|MLT1J	-	chr21	33967100	33968573	AP000569.1|ENST00000607953.1	-	33967100,33968232	33967350,33968573	0.863636
adrenal_gland_female_adult_53_years	chr9	129069607	129069639	129069638	+	High_confidence	5	5	19	0.891999	3.614369	chr9	129069599	129069801	SINE|MIR|MIRb	-	chr9	129069258	129072071	MIGA2|ENST00000483458.1	+	129069258,129070246	129069965,129072071	0.947368
adrenal_gland_female_adult_53_years	chr6	46105674	46105696	46105693	-	RAMPAGE_only	3	3	9	0.422526	2.500000	chr6	46104973	46106121	LTR|ERV1|LTR49-int	+	chr6	46097092	46129591	AL035701.1|ENST00000444038.2	-	46097092,46102539,46129503	46097346,46102659,46129591	0.777778
adrenal_gland_female_adult_53_years	chr12	53251683	53251711	53251683	+	High_confidence	5	5	11	0.516420	3.459432	chr12	53251547	53251701	SINE|MIR|MIRc	-	chr12	53251652	53253752	MFSD5|ENST00000551660.2	+	53251652,53252817	53252035,53253752	1.000000
adrenal_gland_female_adult_53_years	chr9	92536601	92536603	92536601	-	High_confidence	8	13	16	0.751157	3.077820	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.812500
adrenal_gland_female_adult_53_years	chr15	51338597	51338598	51338597	-	High_confidence	7	7	8	0.375578	2.521641	chr15	51338475	51338990	LTR|ERVL|MER21A	-	chr15	51222478	51338597	CYP19A1|ENST00000405011.6	-	51222478,51227778,51236858,51242767,51278007,51338494	51222525,51227933,51237009,51242950,51278162,51338597	0.875000
adrenal_gland_female_adult_53_years	chr19	51795135	51795187	51795186	+	High_confidence	13	13	136	6.384831	5.969411	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.985294
adrenal_gland_female_adult_53_years	chr2	134177490	134177502	134177490	+	RAMPAGE_only	2	2	8	0.375578	3.000000	chr2	134177283	134177549	LTR|ERVL-MaLR|MLT1J1	-	chr2	134120181	134454621	MGAT5|ENST00000409645.5	+	134120181,134254261,134270385,134317528,134318649,134336216,134338258,134341589,134344929,134349804,134362274,134402987,134412868,134422802,134428364,134441757,134448648	134120291,134254644,134270550,134317605,134318739,134336288,134338420,134341759,134345064,134349938,134362408,134403137,134413015,134422919,134428439,134441915,134454621	1.000000
adrenal_gland_female_adult_53_years	chr9	110170760	110170776	110170768	+	RAMPAGE_only	4	6	15	0.704209	3.521641	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	0.933333
adrenal_gland_female_adult_53_years	chr3	128626794	128626811	128626810	-	RAMPAGE_only	4	4	8	0.375578	2.807355	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.875000
adrenal_gland_female_adult_53_years	chr3	157487448	157487449	157487448	-	RAMPAGE_only	19	20	20	0.938946	3.642150	chr3	157486755	157488128	LINE|L1|L1ME3C	+	chr3	157460094	157489356	VEPH1|ENST00000482434.1	-	157460094,157470313,157489054	157460355,157470529,157489356	0.850000
adrenal_gland_female_adult_53_years	chr3	157533650	157533651	157533650	-	High_confidence	5	5	7	0.328631	2.807355	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157470501	157533614	VEPH1|ENST00000489602.1	-	157470501,157495211,157505277,157533512	157470529,157495506,157505409,157533614	0.571429
adrenal_gland_female_adult_53_years	chr20	50267474	50267494	50267477	+	High_confidence	4	4	18	0.845051	4.087463	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.944444
adrenal_gland_female_adult_53_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	31	31	31	1.455366	4.014860	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
adrenal_gland_female_adult_53_years	chr5	151158498	151158518	151158498	-	High_confidence	13	13	41	1.924839	4.515312	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.853659
adrenal_gland_female_adult_53_years	chr5	151157958	151157983	151157982	-	High_confidence	2	2	10	0.469473	2.641604	chr5	151157893	151158048	SINE|MIR|MIR3	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.900000
adrenal_gland_female_adult_53_years	chr17	39965531	39965532	39965531	+	High_confidence	7	7	10	0.469473	2.947703	chr17	39965434	39965542	SINE|MIR|MIRc	+	chr17	39965522	39970565	GSDMA|ENST00000577447.1	+	39965522,39965682,39966259,39970481	39965588,39965901,39966437,39970565	0.900000
adrenal_gland_female_adult_53_years	chr17	75498213	75498255	75498246	+	High_confidence	3	3	16	0.751157	3.452820	chr17	75498201	75498275	LINE|L2|L2-1_Crp	+	chr17	75498216	75498814	TMEM94|ENST00000577194.1	+	75498216,75498443	75498323,75498814	0.687500
adrenal_gland_female_adult_53_years	chr6	11111791	11111845	11111829	-	High_confidence	12	12	71	3.333258	3.982113	chr6	11111706	11112217	LTR|ERV1|MER50	-	chr6	11102488	11111838	ERVFRD-1|NM_207582.2	-	11102488,11111676	11105630,11111838	1.000000
adrenal_gland_female_adult_53_years	chr11	307580	307581	307580	-	RAMPAGE_only	15	15	15	0.704209	3.640224	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	1.000000
adrenal_gland_female_adult_53_years	chr13	22432945	22432961	22432960	+	RAMPAGE_only	4	4	11	0.516420	3.321928	chr13	22432682	22433088	LTR|ERV1|MER57D	+	chr13	22428370	22453872	STRG.36957.1	+	22428370,22453459	22428672,22453872	0.636364
adrenal_gland_female_adult_53_years	chr1	162781286	162781309	162781286	+	RAMPAGE_only	13	13	25	1.173682	3.886842	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.960000
adrenal_gland_female_adult_53_years	chrX	101550442	101550468	101550442	+	High_confidence	2	4	10	0.469473	2.947703	chrX	101550258	101550488	LINE|L1|L1M5	+	chrX	101550530	101554700	ARMCX1|ENST00000372829.7	+	101550530,101550970,101551568,101552808	101550660,101551024,101551633,101554700	0.900000
adrenal_gland_female_adult_53_years	chr7	64999321	64999373	64999372	-	High_confidence	5	5	14	0.657262	3.334679	chr7	64990915	64999343	LTR|ERV1|HERV3-int	-	chr7	64990808	64999430	STRG.22680.9	-	64990808,64999120	64993414,64999430	0.857143
adrenal_gland_female_adult_53_years	chr7	150322656	150322674	150322656	+	High_confidence	827	979	1931	90.655217	5.900510	chr7	150322211	150322830	LTR|ERV1|MER41B	+	chr7	150322638	150332721	STRG.24507.4	+	150322638,150325840,150328634	150323212,150326010,150332721	0.988607
adrenal_gland_female_adult_53_years	chrX	38612581	38612623	38612622	+	RAMPAGE_only	5	5	13	0.610315	3.026987	chrX	38612500	38614189	LINE|L1|HAL1	-	chrX	38570682	38675816	TSPAN7|ENST00000488893.5	+	38570682,38666120,38671375,38674220,38675704	38570946,38666309,38671450,38674316,38675816	0.769231
adrenal_gland_female_adult_53_years	chr22	50330653	50330680	50330679	+	RAMPAGE_only	7	8	28	1.314524	4.235926	chr22	50330424	50330745	SINE|Alu|AluY	+	chr22	50343303	50445090	PPP6R2|ENST00000359139.7	+	50343303,50372019,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439697,50439960,50440821,50443865,50444202	50343550,50372150,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50445090	0.571429
adrenal_gland_female_adult_53_years	chr4	86453161	86453207	86453202	-	High_confidence	7	10	57	2.675996	4.738013	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.894737
adrenal_gland_female_adult_53_years	chr1	156252930	156252931	156252930	-	RAMPAGE_only	8	9	10	0.469473	3.121928	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156250032	156251380	SMG5|ENST00000476954.1	-	156250032,156250857	156250670,156251380	0.800000
adrenal_gland_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	6629	6857	19362	908.993429	7.559343	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.915298
adrenal_gland_female_adult_53_years	chr4	185620092	185620126	185620093	-	RAMPAGE_only	5	10	54	2.535154	4.162745	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.722222
adrenal_gland_female_adult_53_years	chr8	18063185	18063216	18063215	-	High_confidence	7	7	19	0.891999	3.471354	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
adrenal_gland_female_adult_53_years	chr16	30499535	30499570	30499550	-	High_confidence	13	13	60	2.816837	5.008288	chr16	30499510	30499629	SINE|MIR|MIR1_Amn	+	chr16	30498765	30499554	AC116348.2|ENST00000563751.1	-	30498765,30499363	30499151,30499554	0.883333
adrenal_gland_female_adult_53_years	chr14	106845858	106845894	106845858	-	High_confidence	3	3	18	0.845051	3.969816	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106809251	106846124	STRG.39986.1	-	106809251,106810849,106845802	106810746,106811054,106846124	0.611111
adrenal_gland_female_adult_53_years	chr4	152412488	152412498	152412497	-	High_confidence	3	3	8	0.375578	2.807355	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.875000
adrenal_gland_female_adult_53_years	chr5	14653390	14653391	14653390	-	High_confidence	49	49	49	2.300417	4.077971	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	1.000000
adrenal_gland_female_adult_53_years	chr3	69237182	69237188	69237187	-	RAMPAGE_only	5	8	14	0.657262	3.546594	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69195248	69200898	FRMD4B|ENST00000462512.1	-	69195248,69196254,69196899,69198697,69200811	69195364,69196396,69197038,69198774,69200898	0.500000
adrenal_gland_female_adult_53_years	chr16	15006394	15006395	15006394	+	RAMPAGE_only	18	18	19	0.891999	3.461320	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.789474
adrenal_gland_female_adult_53_years	chr1	234980760	234980791	234980760	-	RAMPAGE_only	8	8	44	2.065681	5.033184	chr1	234980615	234980877	SINE|5S-Deu-L2|AmnSINE1	-	chr1	234959662	234963188	AL391832.2|ENST00000423175.1	-	234959662,234961416,234963038	234959916,234961566,234963188	0.613636
adrenal_gland_female_adult_53_years	chr7	40742581	40742612	40742599	+	RAMPAGE_only	469	491	1900	89.199851	6.665629	chr7	40742340	40742651	DNA|hAT-Charlie|MER1B	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.931579
adrenal_gland_female_adult_53_years	chr17	68413622	68413649	68413648	+	High_confidence	5	5	12	0.563367	3.084963	chr17	68408123	68414142	LINE|L1|L1PA3	-	chr17	68413622	68524949	AC007780.1|ENST00000590353.1	+	68413622,68515393,68522755,68523724,68524015,68524911	68413795,68515576,68522926,68523816,68524077,68524949	0.500000
adrenal_gland_female_adult_53_years	chr5	137997945	137997993	137997945	-	RAMPAGE_only	5	7	18	0.845051	3.836592	chr5	137997891	137998211	LTR|ERV1|MER57E1	+	chr5	137940180	138032928	STRG.17671.1	-	137940180,137941943,137942874,137943132,137945901,137946227,137948954,137952627,137953335,137954165,137956476,137959615,137960165,137962404,137985256,137987460,137988273,138006989,138011007,138011767,138018301,138018954,138021030,138032781	137940348,137942045,137943038,137943216,137945997,137946311,137949184,137952709,137953465,137954376,137956542,137959763,137960214,137962469,137985389,137987616,137988315,138007147,138011149,138011945,138018514,138019146,138021197,138032928	0.944444
adrenal_gland_female_adult_53_years	chr17	13931138	13931174	13931138	-	RAMPAGE_only	2	2	10	0.469473	2.947703	chr17	13931030	13931624	LTR|ERVL-MaLR|MLT1L	+	chr17	13776831	13892839	COX10-AS1|ENST00000577798.6	-	13776831,13790268,13865078,13880301,13892724	13777349,13790313,13865266,13880371,13892839	0.500000
adrenal_gland_female_adult_53_years	chr1	212792472	212792473	212792472	-	High_confidence	8	8	8	0.375578	2.500000	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	1.000000
adrenal_gland_female_adult_53_years	chr6	43013379	43013393	43013392	-	High_confidence	12	12	22	1.032840	4.277613	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
adrenal_gland_female_adult_53_years	chr5	109383486	109383500	109383486	-	High_confidence	2	2	7	0.328631	2.584963	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.857143
adrenal_gland_female_adult_53_years	chr12	104280730	104280809	104280736	-	High_confidence	34	34	247	11.595981	6.731051	chr12	104280524	104280952	LTR|ERVL|MLT2D	+	chr12	104262313	104280722	AC089983.1|ENST00000549807.1	-	104262313,104280283	104262575,104280722	0.874494
adrenal_gland_female_adult_53_years	chr1	226939309	226939346	226939309	+	High_confidence	2	2	9	0.422526	2.725481	chr1	226939237	226939309	DNA|hAT-Charlie|Charlie18a	-	chr1	226940236	226987545	ADCK3|NM_020247.4	+	226940236,226961376,226964999,226965670,226977448,226982026,226982677,226982893,226983551,226983760,226984093,226984547,226984875,226985253,226986452	226940399,226961562,226965410,226965737,226977523,226982149,226982763,226983034,226983633,226983854,226984235,226984655,226984941,226985340,226987545	0.777778
adrenal_gland_female_adult_53_years	chrX	93432836	93432837	93432836	+	High_confidence	19	19	22	1.032840	3.744239	chrX	93430164	93437998	LTR|ERV1|HERVE-int	+	chrX	93432747	93434069	STRG.53523.1	+	93432747,93433484	93433363,93434069	0.818182
adrenal_gland_female_adult_53_years	chr7	130566544	130566577	130566576	-	RAMPAGE_only	4	4	8	0.375578	2.500000	chr7	130566496	130566917	LTR|ERV1|LTR46	-	chr7	130506523	130564511	COPG2|ENST00000617523.1	-	130506523,130507273,130507684,130508568,130547673,130548402,130549313,130550523,130551240,130552354,130554480,130555036,130561032,130563268,130564259	130506806,130507372,130507823,130508659,130547845,130548542,130549376,130550649,130551344,130552430,130554724,130555132,130561221,130563336,130564511	1.000000
adrenal_gland_female_adult_53_years	chr19	45524130	45524142	45524130	+	RAMPAGE_only	4	4	9	0.422526	2.725481	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45507505	45526942	VASP|ENST00000586014.5	+	45507505,45517662,45517928,45522522,45522717,45523643,45523840,45524096,45524569,45525945,45526139	45507776,45517834,45517963,45522581,45522818,45523695,45523877,45524142,45524660,45526003,45526942	0.666667
adrenal_gland_female_adult_53_years	chr21	29077453	29077487	29077486	+	High_confidence	11	11	27	1.267577	4.023465	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.555556
adrenal_gland_female_adult_53_years	chr7	21851161	21851190	21851168	+	High_confidence	21	24	181	8.497459	5.598405	chr7	21851065	21851438	LTR|ERVL-MaLR|THE1C	+	chr7	21851161	21861970	DNAH11|ENST00000607413.5	+	21851161,21852466,21854314,21861852	21851320,21852631,21854455,21861970	0.911602
adrenal_gland_female_adult_53_years	chr11	68773414	68773423	68773414	-	RAMPAGE_only	4	5	8	0.375578	2.500000	chr11	68773373	68773449	LINE|CR1|L3	+	chr11	68754619	68815503	CPT1A|ENST00000540367.5	-	68754619,68759568,68760224,68761534,68762626,68773264,68775315,68780639,68781770,68784814,68793314,68794803,68796855,68799217,68803999,68807466,68812436,68815333	68754851,68759661,68760338,68761687,68762761,68773429,68775432,68780745,68781959,68785010,68793402,68794911,68796933,68799355,68804101,68807638,68812576,68815503	1.000000
adrenal_gland_female_adult_53_years	chr12	12635947	12635974	12635947	+	RAMPAGE_only	4	7	15	0.704209	3.640224	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	1.000000
adrenal_gland_female_adult_53_years	chr11	72111459	72111497	72111496	-	High_confidence	2	3	7	0.328631	2.521641	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72108817	72111497	ANAPC15|ENST00000538117.5	-	72108817,72109228,72110087,72110543,72111156,72111411	72108875,72109341,72110225,72110603,72111281,72111497	0.571429
adrenal_gland_female_adult_53_years	chr8	38825311	38825361	38825360	+	RAMPAGE_only	6	7	30	1.408419	4.681728	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	1.000000
adrenal_gland_female_adult_53_years	chr7	74568837	74568850	74568841	+	RAMPAGE_only	4	4	15	0.704209	3.506891	chr7	74568749	74569022	LINE|L2|L2	-	chr7	74600959	74602583	GTF2IRD1|ENST00000486086.1	+	74600959,74602364	74601180,74602583	0.533333
adrenal_gland_female_adult_53_years	chr11	46865469	46865473	46865469	-	RAMPAGE_only	4	4	14	0.657262	3.392747	chr11	46865442	46865504	LINE|CR1|L3	+	chr11	46856869	46862933	LRP4|ENST00000529604.1	-	46856869,46862605	46859315,46862933	0.928571
adrenal_gland_female_adult_53_years	chr21	36005313	36005320	36005313	+	High_confidence	5	5	10	0.469473	2.846439	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.800000
adrenal_gland_female_adult_53_years	chr15	66502611	66502741	66502611	-	High_confidence	24	24	327	15.351764	6.441610	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.892966
adrenal_gland_female_adult_53_years	chr15	75879161	75879162	75879161	+	High_confidence	15	15	15	0.704209	3.373557	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75878185	75897062	UBE2Q2|ENST00000563966.1	+	75878185,75879097,75883365,75890434,75890918,75896994	75878360,75879188,75883424,75890483,75891014,75897062	0.733333
adrenal_gland_female_adult_53_years	chr11	110429298	110429341	110429298	+	High_confidence	5	5	22	1.032840	3.844233	chr11	110429165	110429333	SINE|MIR|MIRb	-	chr11	110429400	110472082	STRG.33646.1	+	110429400,110429933,110435833,110456917,110462353,110463419,110464792	110429832,110430305,110435958,110457047,110463338,110464748,110472082	0.954545
adrenal_gland_female_adult_53_years	chr9	121281886	121281892	121281886	+	RAMPAGE_only	4	4	9	0.422526	2.947703	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	1.000000
adrenal_gland_female_adult_53_years	chr7	88277540	88277721	88277540	-	RAMPAGE_only	5	8	78	3.661889	5.355539	chr7	88277452	88277571	LINE|L1|L1ME4c	+	chr7	88270892	88306880	STRG.23120.1	-	88270892,88280914,88282640,88283813,88290915,88306791	88279628,88281079,88283168,88284271,88291014,88306880	1.000000
adrenal_gland_female_adult_53_years	chr14	92733116	92733148	92733116	-	RAMPAGE_only	3	3	12	0.563367	3.584963	chr14	92732868	92733169	SINE|Alu|AluSg	+	chr14	92703846	92748603	LGMN|ENST00000557609.5	-	92703846,92704639,92706482,92709671,92711658,92711836,92712804,92713822,92714375,92717379,92718746,92732648,92748488	92704361,92704707,92706653,92709872,92711748,92711955,92712871,92713885,92714451,92717461,92718844,92732815,92748603	0.666667
adrenal_gland_female_adult_53_years	chr4	4461944	4462005	4461960	-	High_confidence	75	78	271	12.722716	6.511572	chr4	4461848	4462205	LTR|ERVL|LTR79	+	chr4	4425160	4461954	STX18|ENST00000512195.5	-	4425160,4434769,4438393,4457190,4457422,4459371,4461905	4425222,4434858,4438509,4457257,4457500,4459487,4461954	0.900369
adrenal_gland_female_adult_53_years	chr15	74361111	74361146	74361111	+	RAMPAGE_only	19	20	43	2.018733	4.765731	chr15	74360994	74361387	LTR|ERV1|MER41-int	+	chr15	74354455	74364620	PPIAP46|ENST00000562009.1	+	74354455,74361513	74354685,74364620	0.953488
adrenal_gland_female_adult_53_years	chr2	6866532	6866580	6866552	-	High_confidence	6	6	17	0.798104	3.454822	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.941176
adrenal_gland_female_adult_53_years	chr1	51403432	51403485	51403432	-	RAMPAGE_only	8	8	41	1.924839	4.002656	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.975610
adrenal_gland_female_adult_53_years	chr7	64999443	64999444	64999443	-	High_confidence	512	536	592	27.792796	7.012459	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64990808	64999430	STRG.22680.9	-	64990808,64999120	64993414,64999430	0.923986
adrenal_gland_female_adult_53_years	chr12	12927723	12927741	12927733	+	High_confidence	113	113	246	11.549033	7.125388	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.626016
adrenal_gland_female_adult_53_years	chr6	28335912	28335921	28335912	-	High_confidence	2	3	9	0.422526	2.750000	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.888889
adrenal_gland_female_adult_53_years	chr5	160199150	160199156	160199155	+	High_confidence	133	165	293	13.755556	4.981352	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199156	160238716	STRG.18151.2	+	160199156,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238716	0.938567
adrenal_gland_female_adult_53_years	chr4	4477582	4477599	4477582	-	RAMPAGE_only	3	3	13	0.610315	3.022055	chr4	4477450	4477692	SINE|MIR|MIR	-	chr4	4425160	4461954	STX18|ENST00000512195.5	-	4425160,4434769,4438393,4457190,4457422,4459371,4461905	4425222,4434858,4438509,4457257,4457500,4459487,4461954	0.615385
adrenal_gland_female_adult_53_years	chr17	59619888	59619923	59619894	+	High_confidence	1011	1153	3404	159.808575	6.399952	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.944477
adrenal_gland_female_adult_53_years	chr10	133369912	133370029	133369997	-	RAMPAGE_only	4	5	33	1.549261	4.288910	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.969697
adrenal_gland_female_adult_53_years	chr1	246176493	246176563	246176562	-	High_confidence	38	41	221	10.375351	6.327357	chr1	246176527	246176817	SINE|Alu|AluJb	-	chr1	245749350	246176567	STRG.4978.3	-	245749350,245764040,245858495,245863798,245915529,245927930,245929869,246176464	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246176567	0.977376
adrenal_gland_female_adult_53_years	chrX	120594156	120594160	120594159	+	High_confidence	10	13	18	0.845051	3.503258	chrX	120594152	120598861	LINE|L1|L1MA1	+	chrX	120594080	120611047	MCTS1|ENST00000493274.5	+	120594080,120594950,120605406,120606078,120608224,120611010	120594272,120595068,120605559,120606176,120608358,120611047	0.777778
adrenal_gland_female_adult_53_years	chr2	218287266	218287280	218287279	-	High_confidence	287	287	590	27.698901	6.241588	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.854237
adrenal_gland_female_adult_53_years	chr1	58903660	58903673	58903660	-	High_confidence	3	4	17	0.798104	3.750000	chr1	58903524	58903639	SINE|MIR|MIRb	-	chr1	58882871	58903679	AC105277.1|ENST00000635492.1	-	58882871,58889148,58895844,58896997,58903567	58883734,58889208,58896009,58897090,58903679	0.882353
adrenal_gland_female_adult_53_years	chr4	158172929	158173025	158173024	-	High_confidence	1206	1267	2635	123.706109	7.952106	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158130799	158173023	STRG.15378.7	-	158130799,158155610,158170465,158172867	158131220,158155825,158171599,158173023	0.913852
adrenal_gland_female_adult_53_years	chr6	31587201	31587275	31587201	+	High_confidence	28	37	139	6.525673	5.279998	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.992806
adrenal_gland_female_adult_53_years	chr7	11194708	11194724	11194708	+	RAMPAGE_only	7	7	16	0.751157	3.640224	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.625000
adrenal_gland_female_adult_53_years	chr1	212234697	212234703	212234702	-	High_confidence	3	3	9	0.422526	3.169925	chr1	212234586	212234675	DNA|hAT-Charlie|Charlie24	-	chr1	212225277	212234736	LOC101929541|NR_125983.1	-	212225277,212230202,212234502	212225513,212230259,212234736	1.000000
adrenal_gland_female_adult_53_years	chr3	188947212	188947237	188947236	+	High_confidence	5	6	9	0.422526	2.947703	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.555556
adrenal_gland_female_adult_53_years	chr9	129489063	129489126	129489125	+	High_confidence	42	55	154	7.229883	6.026962	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.935065
adrenal_gland_female_adult_53_years	chr4	152850647	152850656	152850647	+	High_confidence	5	5	11	0.516420	2.721928	chr4	152850580	152850736	DNA|hAT-Charlie|MER5A1	+	chr4	152850647	152881111	ARFIP1|ENST00000513361.1	+	152850647,152863605,152870752,152872451,152880962	152850727,152863714,152870848,152872564,152881111	0.636364
adrenal_gland_female_adult_53_years	chr1	179302537	179302549	179302548	+	RAMPAGE_only	9	13	25	1.173682	4.022055	chr1	179302291	179302649	LTR|ERVL-MaLR|THE1D	+	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.960000
adrenal_gland_female_adult_53_years	chr2	27911044	27911045	27911044	+	RAMPAGE_only	9	9	9	0.422526	2.725481	chr2	27910851	27911226	LTR|ERVL-MaLR|THE1C	+	chr2	27894619	28025488	BABAM2|ENST00000604932.1	+	27894619,27929831,27987992,28025225	27894684,27929908,27988087,28025488	1.000000
adrenal_gland_female_adult_53_years	chr5	73617589	73617603	73617602	+	RAMPAGE_only	3	3	8	0.375578	2.500000	chr5	73617465	73617933	LTR|ERVL-MaLR|MLT1J	+	chr5	73626157	73941992	ARHGEF28|ENST00000513042.6	+	73626157,73684840,73749836,73752908,73773854,73776515,73780675,73794401,73795330,73832337,73840479,73846267,73848975,73852649,73857655,73858086,73864816,73865964,73867875,73868099,73870068,73872998,73882471,73883766,73885849,73887602,73892051,73893196,73894392,73897961,73901183,73904221,73904357,73909411,73911274,73940843	73626322,73684884,73749984,73753202,73774038,73776696,73780745,73794454,73795391,73832459,73840760,73846475,73849087,73852692,73857779,73858219,73864872,73866013,73868020,73868227,73870209,73873246,73882594,73883884,73886104,73887679,73892230,73893288,73894575,73898093,73901284,73904260,73904405,73909897,73911575,73941992	0.750000
adrenal_gland_female_adult_53_years	chr3	120596725	120596754	120596753	-	RAMPAGE_only	3	3	7	0.328631	2.521641	chr3	120596706	120596936	SINE|MIR|MIR	+	chr3	120392292	120451253	FSTL1|ENST00000295633.7	-	120392292,120399882,120402807,120403241,120404852,120409531,120410951,120411853,120415922,120450683,120450896	120396996,120399959,120402918,120403354,120404971,120409662,120410984,120411983,120416027,120450746,120451253	0.714286
adrenal_gland_female_adult_53_years	chr3	37058875	37058887	37058886	-	RAMPAGE_only	3	4	8	0.375578	2.807355	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.875000
adrenal_gland_female_adult_53_years	chr20	63864273	63864305	63864278	-	High_confidence	6	6	18	0.845051	3.572469	chr20	63864154	63864284	SINE|MIR|MIR	+	chr20	63861211	63864293	AL118506.1|ENST00000601296.2	-	63861211	63864293	0.944444
adrenal_gland_female_adult_53_years	chr1	204870210	204870211	204870210	+	High_confidence	4	4	7	0.328631	2.584963	chr1	204870215	204870325	LINE|CR1|L3	+	chr1	204870603	204945032	NFASC|ENST00000493914.5	+	204870603,204920631,204944225,204944736	204870700,204920740,204944406,204945032	0.714286
adrenal_gland_female_adult_53_years	chr8	47360804	47360805	47360804	+	High_confidence	9	9	14	0.657262	3.085055	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47440397	SPIDR|ENST00000521918.6	+	47360818,47396375,47407860,47440322	47360949,47396626,47407961,47440397	0.857143
adrenal_gland_female_adult_53_years	chr8	123025813	123025814	123025813	-	High_confidence	7	7	10	0.469473	2.646439	chr8	123025804	123025900	SINE|MIR|MIRc	-	chr8	123015445	123025772	DERL1|ENST00000523036.1	-	123015445,123019194,123021446,123022683,123023712,123024985,123025722	123015585,123019305,123021499,123022779,123023739,123025050,123025772	0.600000
adrenal_gland_female_adult_53_years	chr17	60886978	60886979	60886978	+	High_confidence	6	6	9	0.422526	2.500000	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.888889
adrenal_gland_female_adult_53_years	chr2	227164620	227164621	227164620	+	High_confidence	87	87	123	5.774517	6.224605	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.829268
adrenal_gland_female_adult_53_years	chr15	80059918	80059933	80059918	+	High_confidence	225	254	580	27.229428	5.477924	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.982759
adrenal_gland_female_adult_53_years	chr6	2999165	2999186	2999185	-	High_confidence	7	7	22	1.032840	3.913977	chr6	2999098	2999242	LINE|L1|L1MD2	-	chr6	2989725	2999134	AL133351.1|ENST00000429319.1	-	2989725,2999012	2990011,2999134	1.000000
adrenal_gland_female_adult_53_years	chr10	91185469	91185496	91185469	+	RAMPAGE_only	5	5	25	1.173682	3.993270	chr10	91179356	91186029	LINE|L1|L1PA13	-	chr10	91163347	91284329	STRG.30766.4	+	91163347,91222688,91240483,91248504,91248664,91251291,91261325,91264430,91271637,91278268	91163667,91222983,91240580,91248560,91248724,91251440,91261424,91264520,91271697,91284329	0.760000
adrenal_gland_female_adult_53_years	chr1	179322451	179322500	179322489	+	RAMPAGE_only	24	28	91	4.272203	5.183070	chr1	179322375	179322519	SINE|Alu|AluSx3	-	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.934066
adrenal_gland_female_adult_53_years	chr9	112471315	112471428	112471315	+	RAMPAGE_only	4	4	52	2.441259	3.653547	chr9	112471252	112471587	LTR|ERVL-MaLR|MLT1B	+	chr9	112380079	112472405	HSDL2|ENST00000398803.1	+	112380079,112403994,112405623,112418859,112438430,112441698,112454012,112459448,112470431	112380180,112404158,112405722,112418958,112438625,112441770,112454162,112459577,112472405	0.942308
adrenal_gland_female_adult_53_years	chr2	200889234	200889318	200889279	-	High_confidence	16	16	65	3.051574	5.390320	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889276	PPIL3|ENST00000465823.5	-	200870955,200876918,200881420,200885697,200887612,200888955	200871521,200877037,200881488,200885772,200887685,200889276	0.738462
adrenal_gland_female_adult_53_years	chr9	121286546	121286549	121286548	+	High_confidence	3	5	7	0.328631	2.584963	chr9	121286415	121286709	LINE|L2|L2b	+	chr9	121286579	121332842	GSN|NM_001258030.1	+	121286579,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286761,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.714286
adrenal_gland_female_adult_53_years	chr3	197913277	197913296	197913295	-	High_confidence	72	76	128	6.009253	6.063357	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.992188
adrenal_gland_female_adult_53_years	chr19	3062734	3062735	3062734	-	High_confidence	14	14	19	0.891999	3.721612	chr19	3062710	3062746	SINE|MIR|MIR3	+	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.789474
adrenal_gland_female_adult_53_years	chr16	84139251	84139281	84139251	-	High_confidence	8	11	33	1.549261	4.687500	chr16	84139153	84139637	LTR|ERVL-MaLR|MLT1D	+	chr16	84122280	84139386	STRG.43573.3	-	84122280,84129547,84129985,84131101,84135543,84139222	84124728,84129775,84130431,84131286,84135605,84139386	0.878788
adrenal_gland_female_adult_53_years	chr11	123469402	123469415	123469402	+	RAMPAGE_only	19	23	32	1.502313	3.223119	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123480737	123594838	GRAMD1B|ENST00000633087.1	+	123480737,123577366,123584311,123594081,123594734	123480893,123577577,123584332,123594166,123594838	0.687500
adrenal_gland_female_adult_53_years	chr2	54631991	54632022	54632021	+	RAMPAGE_only	16	16	66	3.098521	5.095467	chr2	54631930	54632098	SINE|Alu|AluJb	+	chr2	54558393	54662308	SPTBN1|NM_178313.2	+	54558393,54599091,54612160,54616206,54617607,54618077,54621399,54622299,54623478,54624803,54625931,54628096,54628932,54629891,54630854,54632565,54637712,54642982,54644322,54645228,54645927,54646193,54647130,54648985,54649614,54653608,54655069,54655913,54657849,54659153,54659935	54558887,54599243,54612334,54616298,54617688,54618193,54621512,54622487,54623596,54624962,54626234,54628250,54629803,54630029,54631611,54632768,54637803,54643129,54644586,54645453,54646017,54646475,54647261,54649190,54649989,54653853,54655208,54655998,54658046,54659266,54662308	1.000000
adrenal_gland_female_adult_53_years	chr16	28608315	28608316	28608315	-	High_confidence	4	4	6	0.281684	2.584963	chr16	28608009	28608286	SINE|Alu|AluSp	-	chr16	28605195	28608920	SULT1A1|ENST00000569554.5	-	28605195,28606055,28606760,28606950,28608290,28608477,28608707	28605933,28606236,28606855,28607077,28608388,28608603,28608920	1.000000
adrenal_gland_female_adult_53_years	chr16	67173544	67173552	67173544	+	High_confidence	4	4	13	0.610315	3.418296	chr16	67173531	67173719	LINE|L2|L2c	-	chr16	67173852	67175737	NOL3|NM_001276311.1	+	67173852,67174161,67174620,67175046	67174046,67174340,67174944,67175737	0.769231
adrenal_gland_female_adult_53_years	chr17	59892716	59892753	59892716	-	High_confidence	4	4	14	0.657262	3.546594	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.928571
adrenal_gland_female_adult_53_years	chr4	158174135	158174143	158174139	-	High_confidence	21	25	74	3.474099	5.798329	chr4	158173970	158174146	SINE|MIR|MIRb	+	chr4	158127544	158174511	STRG.15378.1	-	158127544,158130785,158155610,158170465,158172867,158174113	158127614,158131012,158155825,158171599,158172920,158174511	0.878378
adrenal_gland_female_adult_53_years	chr11	123061178	123061328	123061212	-	High_confidence	9	9	126	5.915359	5.465703	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.992063
adrenal_gland_female_adult_53_years	chrX	41621337	41621341	41621340	+	High_confidence	8	8	15	0.704209	3.378783	chrX	41621194	41621705	LTR|ERVL-MaLR|MLT1F2	+	chrX	41621559	41647993	STRG.52784.1	+	41621559,41647531	41621671,41647993	0.800000
adrenal_gland_female_adult_53_years	chr1	30742460	30742473	30742460	-	RAMPAGE_only	3	3	14	0.657262	3.085055	chr1	30742233	30742438	SINE|MIR|MIR3	-	chr1	30733888	30746229	LAPTM5|ENST00000464569.1	-	30733888,30735172,30737603,30738939,30739808,30741639,30742455,30745917	30733917,30735265,30737699,30739062,30739937,30741716,30742549,30746229	0.928571
adrenal_gland_female_adult_53_years	chr4	184342183	184342192	184342191	-	RAMPAGE_only	4	4	8	0.375578	2.500000	chr4	184341789	184342273	LTR|ERVL-MaLR|MLT1H	-	chr4	184334220	184347912	STRG.15654.3	-	184334220,184341952,184347701	184334419,184342053,184347912	1.000000
adrenal_gland_female_adult_53_years	chr12	10710653	10710654	10710653	-	High_confidence	6	6	6	0.281684	2.584963	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.666667
adrenal_gland_female_adult_53_years	chr12	26832738	26832810	26832779	-	High_confidence	15	16	45	2.112628	4.869631	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.777778
adrenal_gland_female_adult_53_years	chr11	84097219	84097220	84097219	-	RAMPAGE_only	48	48	49	2.300417	4.740602	chr11	84097168	84097629	LTR|ERV1|MER31B	+	chr11	83962962	84167004	DLG2|ENST00000398299.1	-	83962962,83965323,83980505,84059314,84098922,84163460,84166955	83963023,83965468,83980642,84059484,84099047,84163511,84167004	0.530612
adrenal_gland_female_adult_53_years	chr5	150640301	150640304	150640301	+	High_confidence	7	9	17	0.798104	3.452820	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640017	150659215	STRG.18002.2	+	150640017,150647943,150656403	150640134,150650303,150659215	0.941176
adrenal_gland_female_adult_53_years	chr12	9065167	9065181	9065173	+	High_confidence	24	25	92	4.319151	5.119111	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.684783
adrenal_gland_female_adult_53_years	chr9	113395431	113395432	113395431	-	RAMPAGE_only	14	14	14	0.657262	2.896292	chr9	113395423	113395553	DNA|TcMar-Tigger|Tigger19b	+	chr9	113392131	113397402	ALAD|ENST00000452726.1	-	113392131,113393446,113397045	113392169,113393634,113397402	0.785714
adrenal_gland_female_adult_53_years	chr5	83096150	83096153	83096152	+	RAMPAGE_only	8	10	15	0.704209	3.240224	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	1.000000
adrenal_gland_female_adult_53_years	chr11	310056	310068	310067	+	High_confidence	4	4	9	0.422526	2.500000	chr11	309444	310164	LTR|ERV1|LTR30	-	chr11	310280	315272	STRG.31541.3	+	310280,313996,314921	310314,314356,315272	0.888889
adrenal_gland_female_adult_53_years	chr9	121313981	121314021	121314002	+	RAMPAGE_only	13	13	64	3.004627	4.651864	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
adrenal_gland_female_adult_53_years	chr3	9973627	9973649	9973627	-	RAMPAGE_only	2	2	8	0.375578	2.500000	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	1.000000
adrenal_gland_female_adult_53_years	chr13	49495740	49495750	49495740	+	High_confidence	3	3	8	0.375578	2.750000	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495664	49518060	PHF11|ENST00000481509.5	+	49495664,49513058,49518017	49496095,49513166,49518060	0.750000
adrenal_gland_female_adult_53_years	chrX	134949529	134949530	134949529	+	High_confidence	34	37	43	2.018733	4.716950	chrX	134949285	134949569	LTR|ERVL-MaLR|MLT1D	+	chrX	134950245	134960886	STRG.54088.1	+	134950245,134957545,134959772	134950535,134957683,134960886	0.813953
adrenal_gland_female_adult_53_years	chr9	68975752	68975784	68975774	-	High_confidence	3	3	14	0.657262	3.392747	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.571429
adrenal_gland_female_adult_53_years	chr17	4143196	4143215	4143199	+	High_confidence	327	344	756	35.492151	6.465232	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.976190
adrenal_gland_female_adult_53_years	chr14	94109769	94109774	94109769	+	High_confidence	6	6	14	0.657262	3.521641	chr14	94109433	94109807	LTR|ERV1|MER65B	-	chr14	94110732	94116698	IFI27|ENST00000616764.4	+	94110732,94110925,94111624,94114850,94115780,94116441	94110797,94110978,94111773,94114880,94115942,94116698	1.000000
adrenal_gland_female_adult_53_years	chr1	225810582	225810607	225810606	+	High_confidence	7	7	13	0.610315	3.251629	chr1	225810574	225810980	LTR|ERV1|LTR7	-	chr1	225810411	225845559	EPHX1|ENST00000614058.4	+	225810411,225828724,225831778,225838653,225839216,225839828,225842365,225844497,225845145	225810615,225828912,225831959,225838881,225839346,225840037,225842474,225844623,225845559	0.923077
adrenal_gland_female_adult_53_years	chr1	207220273	207220274	207220273	+	High_confidence	40	41	54	2.535154	4.853118	chr1	207219801	207220376	LTR|ERV1|LTR61	+	chr1	207220077	207230950	STRG.4258.1	+	207220077,207228787	207220607,207230950	0.944444
adrenal_gland_female_adult_53_years	chr10	69315797	69315806	69315805	+	High_confidence	3	5	8	0.375578	2.807355	chr10	69315806	69315937	SINE|MIR|MIRc	+	chr10	69315784	69401443	HK1|ENST00000298649.8	+	69315784,69343826,69359896,69364782,69368535,69369236,69369440,69376933,69379861,69382486,69384332,69384795,69386322,69389196,69392124,69394949,69398594,69400990	69316014,69343989,69360045,69364902,69368631,69369336,69369624,69377089,69380095,69382791,69384481,69384915,69386418,69389296,69392308,69395105,69398828,69401443	0.875000
adrenal_gland_female_adult_53_years	chr10	102449836	102449845	102449844	+	High_confidence	11	12	43	2.018733	4.486582	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449839	102456297	STRG.31177.1	+	102449839,102450186,102451398,102452089,102455336	102450022,102450330,102451555,102452187,102456297	1.000000
adrenal_gland_female_adult_53_years	chr12	47223495	47223548	47223547	+	High_confidence	15	16	76	3.567994	5.849708	chr12	47223277	47223596	LINE|L2|L2	-	chr12	47223500	47235566	PCED1B|ENST00000549630.1	+	47223500,47235006	47223672,47235566	0.776316
adrenal_gland_female_adult_53_years	chr1	151195069	151195115	151195091	-	RAMPAGE_only	3	4	16	0.751157	3.773557	chr1	151194900	151195210	SINE|Alu|AluSc8	+	chr1	151176299	151190213	VPS72|NM_001271087.1	-	151176299,151178000,151184316,151185505,151185797,151190004	151177064,151178145,151184493,151185620,151185950,151190213	0.562500
adrenal_gland_female_adult_53_years	chr14	105024981	105024999	105024998	-	High_confidence	7	8	17	0.798104	3.750000	chr14	105024875	105025057	LTR|ERVL-MaLR|MLT1H	-	chr14	105010002	105024978	STRG.39923.2	-	105010002,105024872	105011935,105024978	0.764706
adrenal_gland_female_adult_53_years	chr14	100903704	100903726	100903704	-	High_confidence	16	16	37	1.737050	4.683542	chr14	100903521	100903697	SINE|MIR|MIRb	-	chr14	100879752	100903722	RTL1|ENST00000649591.1	-	100879752,100893443,100903290,100903604	100884874,100893505,100903386,100903722	0.945946
adrenal_gland_female_adult_53_years	chr3	33130007	33130054	33130041	+	RAMPAGE_only	4	5	13	0.610315	3.418296	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	0.923077
adrenal_gland_female_adult_53_years	chr2	180569	180629	180578	+	High_confidence	25	29	132	6.197042	5.150012	chr2	180349	180763	LTR|ERV1|LOR1-int	+	chr2	180233	186635	STRG.5038.1	+	180233,184873,186313	180670,184969,186635	0.750000
adrenal_gland_female_adult_53_years	chr15	74354435	74354436	74354435	+	High_confidence	41	42	45	2.112628	4.771598	chr15	74354143	74354537	LTR|ERV1|LTR7	+	chr15	74354455	74364620	PPIAP46|ENST00000562009.1	+	74354455,74361513	74354685,74364620	0.666667
adrenal_gland_female_adult_53_years	chr1	154975518	154975546	154975524	+	High_confidence	9	9	40	1.877892	4.038081	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.925000
adrenal_gland_female_adult_53_years	chr7	95506771	95506772	95506771	+	RAMPAGE_only	10	11	12	0.563367	2.594907	chr7	95506197	95507338	LINE|L1|HAL1	-	chr7	95485900	95540231	ASB4|NM_016116.2	+	95485900,95495757,95527812,95536436,95537570	95486158,95496057,95528303,95536550,95540231	0.833333
adrenal_gland_female_adult_53_years	chr4	39032920	39032921	39032920	-	High_confidence	11	12	17	0.798104	3.625000	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	38993734	39032922	TMEM156|ENST00000344606.6	-	38993734,38998723,39032225,39032641	38993998,38998909,39032443,39032922	0.882353
adrenal_gland_female_adult_53_years	chr4	79258867	79258868	79258867	+	High_confidence	6	8	9	0.422526	2.500000	chr4	79257987	79259677	LTR|ERV1|MER52A	+	chr4	79258780	79308654	LINC01088|ENST00000511241.5	+	79258780,79306690,79308272	79259039,79306728,79308654	0.888889
adrenal_gland_female_adult_53_years	chr12	9567470	9567471	9567470	+	RAMPAGE_only	9	9	9	0.422526	2.725481	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9563963	9633828	AC092821.3|ENST00000642112.1	+	9563963,9567489,9569057,9570762,9571460,9573002,9573465,9584105,9606352,9607670,9617243,9622318,9633424	9565303,9567567,9569202,9570892,9571573,9573093,9573534,9584164,9606456,9607802,9617351,9622436,9633828	0.555556
adrenal_gland_female_adult_53_years	chr3	28291847	28291848	28291847	+	RAMPAGE_only	8	8	8	0.375578	2.500000	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28241583	28319762	CMC1|ENST00000477739.1	+	28241583,28263290,28316332	28241812,28263380,28319762	0.625000
adrenal_gland_female_adult_53_years	chr16	70590308	70590335	70590328	+	RAMPAGE_only	10	11	34	1.596208	4.558051	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.705882
adrenal_gland_female_adult_53_years	chr9	121340610	121340640	121340610	-	RAMPAGE_only	2	2	14	0.657262	3.392747	chr9	121340456	121340767	SINE|Alu|AluSq2	+	chr9	121339076	121370205	STOM|ENST00000286713.6	-	121339076,121348014,121349119,121353219,121354600,121356052,121370126	121341408,121348149,121349323,121353302,121354673,121356156,121370205	0.928571
adrenal_gland_female_adult_53_years	chr8	56559496	56559497	56559496	-	High_confidence	6	6	6	0.281684	2.584963	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.666667
adrenal_gland_female_adult_53_years	chr11	65382645	65382646	65382645	-	High_confidence	8	8	11	0.516420	2.721928	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65379452	65382645	SLC25A45|ENST00000529962.5	-	65379452,65379866,65380131,65380533,65381874,65382485	65379561,65379938,65380175,65380622,65381969,65382645	0.636364
adrenal_gland_female_adult_53_years	chr5	57186580	57186595	57186580	+	RAMPAGE_only	2	3	7	0.328631	2.521641	chr5	57186403	57186591	LINE|L1|L1ME1	-	chr5	57175945	57263085	GPBP1|ENST00000511209.5	+	57175945,57214073,57221375,57230845,57231097,57235965,57246299,57247074,57249453,57250953,57261179,57262593	57176400,57214193,57221396,57230969,57231321,57236032,57246484,57247215,57249576,57251141,57261282,57263085	1.000000
adrenal_gland_female_adult_53_years	chr16	21637128	21637131	21637130	-	High_confidence	142	241	292	13.708609	5.573033	chr16	21636946	21637915	LTR|ERV1|LTR12D	-	chr16	21629486	21637145	STRG.42597.1	-	21629486,21636883	21630749,21637145	0.917808
adrenal_gland_female_adult_53_years	chr19	50379814	50379860	50379859	+	RAMPAGE_only	5	6	19	0.891999	3.308271	chr19	50379903	50379991	SINE|MIR|MIRc	+	chr19	50377244	50382944	NR1H2|ENST00000593926.5	+	50377244,50377586,50377732,50378148,50378521,50379001,50379779,50381965,50382455	50377328,50377648,50377870,50378439,50378796,50379181,50379879,50382174,50382944	0.947368
adrenal_gland_female_adult_53_years	chr20	44959341	44959342	44959341	+	RAMPAGE_only	4	4	6	0.281684	2.584963	chr20	44959390	44959947	LINE|L2|L2b	+	chr20	44966473	45079959	STK4|ENST00000372806.7	+	44966473,44972077,44978442,44981828,44987131,44995089,44997168,45000391,45001166,45024972,45075017	44966603,44972158,44978571,44981943,44987296,44995257,44997306,45000520,45001353,45025130,45079959	1.000000
adrenal_gland_female_adult_53_years	chr6	38687135	38687141	38687138	-	RAMPAGE_only	5	5	13	0.610315	3.180833	chr6	38687125	38687432	LTR|ERVL|LTR16C	+	chr6	38675942	38683215	GLO1|ENST00000470973.1	-	38675942,38682011,38682807	38677383,38682101,38683215	0.538462
adrenal_gland_female_adult_53_years	chr11	72114848	72114849	72114848	+	High_confidence	13	13	14	0.657262	2.873141	chr11	72114280	72114987	LINE|L2|L2a	-	chr11	72114868	72139628	FOLR3|ENST00000622388.4	+	72114868,72115034,72135946,72138960,72139346,72139586	72114925,72115185,72136120,72139149,72139482,72139628	0.642857
adrenal_gland_female_adult_53_years	chrX	103577211	103577212	103577211	+	High_confidence	12	16	16	0.751157	3.327820	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
adrenal_gland_female_adult_53_years	chr12	118139311	118139332	118139331	+	High_confidence	12	12	25	1.173682	3.708132	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.840000
adrenal_gland_female_adult_53_years	chr20	50172404	50172465	50172444	+	High_confidence	3	3	15	0.704209	3.506891	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.600000
adrenal_gland_female_adult_53_years	chr15	75007499	75007505	75007504	+	RAMPAGE_only	12	14	34	1.596208	3.884859	chr15	75007388	75007556	SINE|Alu|AluJo	-	chr15	75011657	75018467	SCAMP5|ENST00000564779.5	+	75011657,75011791,75012676,75016592,75017869,75018417	75011680,75011846,75012805,75016749,75017971,75018467	0.852941
adrenal_gland_female_adult_53_years	chr7	75791598	75791618	75791602	-	RAMPAGE_only	3	4	11	0.516420	3.277613	chr7	75791545	75791632	SINE|Alu|FLAM_C	-	chr7	75769532	75789896	CCL26|ENST00000394905.2	-	75769532,75771888,75772103,75789716	75769789,75772003,75772254,75789896	1.000000
adrenal_gland_female_adult_53_years	chr2	131492719	131492736	131492719	-	High_confidence	4	6	10	0.469473	3.321928	chr2	131492672	131492724	LINE|L2|L2b	+	chr2	131483959	131493269	STRG.7487.2	-	131483959,131491875,131492206,131492991	131484218,131492024,131492719,131493269	0.800000
adrenal_gland_female_adult_53_years	chr1	35146365	35146412	35146390	-	High_confidence	6	6	25	1.173682	3.969002	chr1	35145875	35146564	LTR|ERV1|HERV3-int	-	chr1	35141585	35146363	STRG.977.1	-	35141585,35146298	35143033,35146363	0.840000
adrenal_gland_female_adult_53_years	chr11	125090446	125090447	125090446	+	RAMPAGE_only	617	620	626	29.389004	6.522092	chr11	125089312	125090854	LTR|ERV1|LTR12C	+	chr11	125063334	125107550	STRG.33979.1	+	125063334,125076756,125077229,125077449,125079111,125079683,125080613,125081420,125081753,125082243,125083814,125084233,125084824,125085065,125085394,125085576,125085953,125088118,125102104	125063426,125076838,125077323,125077528,125079247,125079760,125080780,125081458,125081906,125082334,125083877,125084319,125084873,125085139,125085473,125085674,125086018,125090871,125107550	0.865815
adrenal_gland_female_adult_53_years	chr1	32221748	32221803	32221770	+	High_confidence	7	7	42	1.971786	4.948896	chr1	32221596	32221823	SINE|MIR|MIRb	-	chr1	32221927	32226295	EIF3I|ENST00000355082.9	+	32221927,32222357,32222537,32224033,32224409,32226170	32222032,32222444,32222630,32224121,32224475,32226295	0.714286
adrenal_gland_female_adult_53_years	chr5	157100476	157100536	157100535	-	RAMPAGE_only	11	11	47	2.206523	4.607156	chr5	157100457	157100544	LINE|L2|L2a	-	chr5	157087087	157109122	HAVCR2|ENST00000522593.5	-	157087087,157088940,157095305,157098857,157106626,157108925	157087294,157088977,157095459,157098901,157106962,157109122	0.829787
adrenal_gland_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	32	32	32	1.502313	3.327319	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
adrenal_gland_female_adult_53_years	chr14	100829592	100829610	100829592	+	High_confidence	3	3	8	0.375578	2.500000	chr14	100829596	100829639	LINE|L2|L2b	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.625000
adrenal_gland_female_adult_53_years	chr13	99496775	99496799	99496798	-	RAMPAGE_only	5	5	11	0.516420	3.121928	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491467	99494143	LINC01232|ENST00000625287.1	-	99491467	99494143	0.636364
adrenal_gland_female_adult_53_years	chr12	109179279	109179280	109179279	+	RAMPAGE_only	7	7	11	0.516420	3.121928	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109139396	109260147	ACACB|ENST00000377854.9	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260147	0.909091
adrenal_gland_female_adult_53_years	chr8	144106344	144106359	144106358	+	RAMPAGE_only	2	3	7	0.328631	2.584963	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144104511	144107611	MAF1|ENST00000534585.5	+	144104511,144105639,144105868,144106075,144106342,144106834,144107087	144104858,144105766,144105997,144106241,144106674,144106963,144107611	0.857143
adrenal_gland_female_adult_53_years	chr10	72353701	72353710	72353701	-	High_confidence	3	3	9	0.422526	3.000000	chr10	72353576	72353727	SINE|MIR|MIRc	+	chr10	72334080	72354380	DNAJB12|ENST00000461919.5	-	72334080,72335833,72336523,72338201,72340788,72340984,72343365,72353341	72334617,72335931,72336696,72338311,72340868,72341170,72343511,72354380	0.555556
adrenal_gland_female_adult_53_years	chr9	129908898	129908918	129908898	-	RAMPAGE_only	2	2	8	0.375578	2.521641	chr9	129908556	129908853	SINE|Alu|AluSx	-	chr9	129899992	129916243	FNBP1|ENST00000462766.2	-	129899992,129900425,129902907,129908889,129915965	129900101,129900532,129903001,129908999,129916243	0.750000
adrenal_gland_female_adult_53_years	chr22	42644558	42644626	42644615	-	High_confidence	17	18	59	2.769890	5.403581	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	1.000000
adrenal_gland_female_adult_53_years	chr2	200656135	200656136	200656135	+	RAMPAGE_only	5	5	8	0.375578	2.807355	chr2	200656100	200656334	LTR|Gypsy|MamGypsy2-I	+	chr2	200660036	200670650	AOX1|ENST00000260930.10	+	200660036,200661578,200662854,200666686,200668680,200669574,200670628	200660069,200661631,200662969,200666752,200668803,200669742,200670650	0.500000
adrenal_gland_female_adult_53_years	chr2	27904549	27904550	27904549	+	RAMPAGE_only	65	68	88	4.131362	5.010260	chr2	27904412	27904729	LINE|L1|HAL1	+	chr2	27894619	28025488	BABAM2|ENST00000604932.1	+	27894619,27929831,27987992,28025225	27894684,27929908,27988087,28025488	0.727273
adrenal_gland_female_adult_53_years	chr5	157107316	157107337	157107316	-	High_confidence	7	8	20	0.938946	3.621928	chr5	157107099	157107287	DNA|hAT-Charlie|MER5A	-	chr5	157106653	157107302	HAVCR2|ENST00000517358.1	-	157106653,157107045	157106962,157107302	0.750000
adrenal_gland_female_adult_53_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	175	175	175	8.215776	5.864481	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
adrenal_gland_female_adult_53_years	chr2	164761375	164761404	164761403	-	RAMPAGE_only	4	4	14	0.657262	3.700440	chr2	164761399	164761470	SINE|Alu|AluSp	+	chr2	164722305	164773754	COBLL1|ENST00000452626.5	-	164722305,164722424,164727968,164729913,164743686,164773706	164722311,164722522,164728197,164730115,164743875,164773754	0.785714
adrenal_gland_female_adult_53_years	chr6	159681253	159681478	159681340	-	RAMPAGE_only	11	11	106	4.976413	5.512184	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	1.000000
adrenal_gland_female_adult_53_years	chr11	67887307	67887372	67887307	+	High_confidence	8	8	41	1.924839	4.506825	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67887567	67894032	STRG.32896.2	+	67887567,67888152,67893878	67887708,67888324,67894032	0.878049
adrenal_gland_female_adult_53_years	chr6	159716424	159716530	159716426	+	High_confidence	12	19	94	4.413045	5.990561	chr6	159716167	159716546	LTR|ERVL-MaLR|MLT1L	-	chr6	159716404	159756317	STRG.21428.3	+	159716404,159736257,159738989,159742087,159743664,159748190,159753459,159755027	159716596,159736295,159739045,159742146,159743792,159748369,159753614,159756317	0.787234
adrenal_gland_female_adult_53_years	chr20	37297344	37297345	37297344	+	High_confidence	30	30	31	1.455366	4.348394	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.967742
adrenal_gland_female_adult_53_years	chr8	106060475	106060494	106060493	-	High_confidence	3	3	7	0.328631	2.584963	chr8	106060473	106060807	LTR|ERVL|LTR18A	+	chr8	105780409	106060503	ZFPM2-AS1|NR_125796.1	-	105780409,105782386,105785061,105787066,105787448,105798324,106059080,106060380	105780567,105782483,105785217,105787221,105787596,105798442,106059136,106060503	0.571429
adrenal_gland_female_adult_53_years	chr15	85330237	85330287	85330286	-	RAMPAGE_only	6	6	30	1.408419	4.573557	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.600000
adrenal_gland_female_adult_53_years	chr7	158863367	158863402	158863400	+	RAMPAGE_only	10	17	34	1.596208	4.687500	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.882353
adrenal_gland_female_adult_53_years	chr19	9140393	9140428	9140427	+	High_confidence	38	38	142	6.666515	6.080754	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.873239
adrenal_gland_female_adult_53_years	chr5	66690173	66690223	66690212	+	RAMPAGE_only	18	18	77	3.614941	5.007128	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66759729	66986523	MAST4|ENST00000432817.5	+	66759729,66788669,66899950,66902648,66986443	66759862,66788794,66899982,66902736,66986523	0.636364
adrenal_gland_female_adult_53_years	chr2	153871893	153871913	153871897	+	High_confidence	2	2	7	0.328631	2.521641	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871897	154453977	GALNT13|NM_052917.3	+	153871897,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453977	1.000000
adrenal_gland_female_adult_53_years	chr2	42639118	42639135	42639134	+	RAMPAGE_only	4	4	16	0.751157	3.452820	chr2	42639051	42639230	SINE|Alu|AluSx	-	chr2	42568745	42753399	MTA3|ENST00000405094.1	+	42568745,42570436,42579106,42609457,42640172,42644126,42656199,42659762,42682400,42695764,42697775,42704193,42707902,42708873,42718987,42722888,42753373	42568773,42570504,42579200,42609584,42640236,42644244,42656302,42659862,42682589,42695839,42697834,42704318,42708054,42709096,42719074,42723035,42753399	1.000000
adrenal_gland_female_adult_53_years	chr16	66408530	66408547	66408530	+	High_confidence	6	6	16	0.751157	2.682589	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.937500
adrenal_gland_female_adult_53_years	chr1	183590887	183590926	183590910	-	High_confidence	9	9	29	1.361471	4.083617	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.827586
adrenal_gland_female_adult_53_years	chr12	91178974	91178977	91178974	-	High_confidence	8	9	19	0.891999	4.142664	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91143276	91178646	DCN|NM_133506.3	-	91143276,91164604,91178341	91146252,91164717,91178646	0.684211
adrenal_gland_female_adult_53_years	chr7	102973485	102973492	102973491	+	High_confidence	44	44	97	4.553887	5.347545	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973521	102988856	NFE4|ENST00000420058.1	+	102973521,102978380,102988032,102988374	102973771,102978520,102988232,102988856	0.525773
adrenal_gland_female_adult_53_years	chr12	15163615	15163646	15163615	+	High_confidence	2	2	8	0.375578	2.500000	chr12	15163550	15163797	LTR|ERVL|LTR33A	-	chr12	15163332	15173595	STRG.34739.1	+	15163332,15168627,15168842,15169506,15171067	15163829,15168760,15168955,15169628,15173595	1.000000
adrenal_gland_female_adult_53_years	chr8	29017223	29017224	29017223	-	High_confidence	49	50	67	3.145468	5.538910	chr8	29017103	29017388	LTR|ERVL-MaLR|MLT1G	-	chr8	29016159	29017277	STRG.25160.1	-	29016159	29017277	0.925373
adrenal_gland_female_adult_53_years	chr3	188708160	188708187	188708163	+	RAMPAGE_only	12	14	35	1.643155	4.616875	chr3	188708061	188708180	SINE|MIR|MIR3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.971429
adrenal_gland_female_adult_53_years	chr2	55618850	55618870	55618850	-	High_confidence	8	9	15	0.704209	3.056565	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.733333
adrenal_gland_female_adult_53_years	chr8	10138835	10138847	10138846	+	RAMPAGE_only	4	5	11	0.516420	2.921928	chr8	10138793	10139056	LINE|CR1|L3	+	chr8	10095726	10428889	MSRA|ENST00000382490.9	+	10095726,10207832,10245103,10301533,10319882,10428147	10096043,10207901,10245223,10301638,10319989,10428889	0.636364
adrenal_gland_female_adult_53_years	chr5	150743213	150743224	150743223	-	High_confidence	8	8	17	0.798104	3.500000	chr5	150742837	150748950	LINE|L1|L1PA3	+	chr5	150731063	150743159	DCTN4|ENST00000521728.5	-	150731063,150731415,150733367,150742113,150742817	150731156,150731489,150733475,150742157,150743159	0.941176
adrenal_gland_female_adult_53_years	chr12	31749381	31749404	31749381	+	RAMPAGE_only	23	23	57	2.675996	4.049065	chr12	31749068	31749596	LTR|ERV1|LTR8B	-	chr12	31754719	31755121	AC023157.1|ENST00000453713.1	+	31754719	31755121	0.614035
adrenal_gland_female_adult_53_years	chr1	70947389	70947396	70947392	+	High_confidence	9	9	22	1.032840	3.913977	chr1	70947197	70947555	LTR|ERVL-MaLR|THE1A	+	chr1	70947378	70951493	AL031429.1|ENST00000426775.1	+	70947378,70950734,70950900	70947475,70950793,70951493	0.545455
adrenal_gland_female_adult_53_years	chr4	79493255	79493283	79493282	+	High_confidence	8	8	21	0.985893	3.784184	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.714286
adrenal_gland_female_adult_53_years	chr7	76109087	76109092	76109091	-	High_confidence	19	23	51	2.394312	4.834094	chr7	76108929	76109272	LTR|ERV1|MER61A	-	chr7	76071514	76109083	STRG.22975.1	-	76071514,76077105,76084328,76084806,76088138,76091825,76092062,76093296,76099439,76099897,76100908,76103812,76108230,76108434,76108868	76075318,76077295,76084418,76084953,76088216,76091957,76092166,76093401,76099514,76099956,76101414,76104275,76108309,76108762,76109083	1.000000
adrenal_gland_female_adult_53_years	chr1	204870075	204870119	204870113	+	High_confidence	11	11	78	3.661889	5.717895	chr1	204870144	204870213	LINE|CR1|Plat_L3	+	chr1	204870830	205018371	NFASC|ENST00000404076.5	+	204870830,204920631,204944225,204952010,204954187,204954828,204957655,204968248,204968797,204970615,204973275,204974178,204974656,204975270,204976670,204978967,204979361,204980369,204981797,204984026,204985909,204987417,204988632,204991291,205009556,205012796,205016307	204871053,204920740,204944406,204952116,204954384,204954951,204957826,204968360,204968982,204970747,204973419,204974290,204974823,204975418,204976795,204979069,204979559,204980440,204982020,204984142,204986114,204987540,204988806,204991306,205009688,205012866,205018371	0.525641
adrenal_gland_female_adult_53_years	chr19	47227183	47227209	47227193	-	High_confidence	4	4	14	0.657262	3.238901	chr19	47227045	47227213	SINE|MIR|MIR1_Amn	-	chr19	47221644	47227189	BBC3|ENST00000598636.1	-	47221644,47226563	47221918,47227189	0.928571
adrenal_gland_female_adult_53_years	chr5	170267210	170267270	170267259	-	High_confidence	27	27	160	7.511566	6.220977	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.987500
adrenal_gland_female_adult_53_years	chr11	64242573	64242609	64242589	+	High_confidence	2	3	11	0.516420	2.646439	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.909091
adrenal_gland_female_adult_53_years	chr13	110057302	110057307	110057302	-	High_confidence	5	5	11	0.516420	2.921928	chr13	110056667	110057319	LTR|ERV1|LTR58	+	chr13	110036196	110057286	AL355974.2|ENST00000617298.1	-	110036196,110057125	110036971,110057286	0.727273
adrenal_gland_female_adult_53_years	chr7	154928492	154928504	154928503	+	High_confidence	26	26	39	1.830944	4.859641	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.974359
adrenal_gland_female_adult_53_years	chr17	42136445	42136480	42136473	-	High_confidence	2	2	8	0.375578	2.521641	chr17	42136440	42136680	SINE|MIR|MIRb	+	chr17	42128329	42136431	RAB5C|ENST00000552162.5	-	42128329,42128648,42130336,42136340	42128383,42128800,42130590,42136431	0.750000
adrenal_gland_female_adult_53_years	chr2	6918668	6918680	6918679	-	High_confidence	7	7	15	0.704209	3.664498	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6912276	6918680	STRG.5154.2	-	6912276,6914192,6915822,6916815,6918284	6913664,6914350,6915967,6917224,6918680	0.866667
adrenal_gland_female_adult_53_years	chr4	79492503	79492601	79492595	+	High_confidence	14	15	77	3.614941	4.679515	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79586752	STRG.14236.3	+	79492592,79493151,79513784,79585147	79492623,79493585,79513902,79586752	0.922078
adrenal_gland_female_adult_53_years	chr7	2242922	2242923	2242922	+	High_confidence	16	17	17	0.798104	3.875000	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.941176
adrenal_gland_female_adult_53_years	chr16	19699319	19699324	19699319	+	High_confidence	3	3	9	0.422526	2.500000	chr16	19699230	19699443	SINE|MIR|MIRb	-	chr16	19699375	19701120	VPS35L|ENST00000566850.1	+	19699375,19700377	19699648,19701120	0.888889
adrenal_gland_female_adult_53_years	chr7	64993308	64993340	64993308	-	RAMPAGE_only	3	3	19	0.891999	3.836592	chr7	64990915	64999343	LTR|ERV1|HERV3-int	-	chr7	64990808	64999430	STRG.22680.9	-	64990808,64999120	64993414,64999430	0.842105
adrenal_gland_female_adult_53_years	chr13	98988460	98988461	98988460	-	RAMPAGE_only	15	15	15	0.704209	3.506891	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98793486	98978084	DOCK9|NM_001130048.1	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,98977783	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,98978084	0.866667
adrenal_gland_female_adult_53_years	chr6	113873339	113873357	113873339	-	High_confidence	3	3	12	0.563367	2.625815	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.750000
adrenal_gland_female_adult_53_years	chr9	35699084	35699148	35699147	-	High_confidence	4	4	22	1.032840	4.201841	chr9	35699139	35699218	LTR|Gypsy|LTR81B	+	chr9	35698043	35699328	TLN1|ENST00000489255.2	-	35698043,35698322,35698616,35698807,35699031	35698172,35698505,35698679,35698933,35699328	0.681818
adrenal_gland_female_adult_53_years	chr15	75347012	75347043	75347037	+	High_confidence	4	4	16	0.751157	3.625000	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347012	75349098	NEIL1|ENST00000566752.5	+	75347012,75347202,75348883	75347110,75347473,75349098	0.562500
adrenal_gland_female_adult_53_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	52	55	131	6.150095	5.751096	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.885496
adrenal_gland_female_adult_53_years	chr2	128746428	128746430	128746428	-	High_confidence	48	79	90	4.225256	5.794594	chr2	128746345	128746703	LTR|ERVL|LTR42	-	chr2	128744610	128746386	STRG.7452.1	-	128744610,128746366	128745643,128746386	0.966667
adrenal_gland_female_adult_53_years	chr7	111413967	111413999	111413967	-	RAMPAGE_only	4	4	22	1.032840	3.936260	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	110663049	111562291	IMMP2L|NM_032549.3	-	110663049,110886592,110963499,111487237,111521312,111561850	110663721,110886695,110963565,111487341,111521449,111562291	0.500000
adrenal_gland_female_adult_53_years	chrX	13303406	13303409	13303406	-	High_confidence	10	14	23	1.079788	3.642490	chrX	13303238	13303604	LTR|ERVL-MaLR|THE1B	-	chrX	13266047	13303392	LINC02154|ENST00000412485.1	-	13266047,13287428,13303319	13267335,13287564,13303392	1.000000
adrenal_gland_female_adult_53_years	chr5	170267399	170267419	170267407	-	High_confidence	2	3	10	0.469473	3.169925	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170256556	170267327	LCP2|ENST00000520344.1	-	170256556,170258036,170258865,170261106,170262634,170262841,170262966,170267008	170256575,170258166,170258878,170261137,170262742,170262861,170262992,170267327	0.500000
adrenal_gland_female_adult_53_years	chr9	132789820	132789821	132789820	-	RAMPAGE_only	4	4	6	0.281684	2.584963	chr9	132789646	132790007	LTR|ERVL-MaLR|MLT1E2	-	chr9	132725582	132727598	AK8|ENST00000467161.1	-	132725582,132727453	132725925,132727598	1.000000
adrenal_gland_female_adult_53_years	chr14	89183946	89183947	89183946	-	RAMPAGE_only	9	9	9	0.422526	2.503258	chr14	89183817	89183974	SINE|MIR|MIR	+	chr14	89161399	89412476	FOXN3|ENST00000615335.4	-	89161399,89180700,89280949,89350671,89411933	89162969,89180806,89281014,89350808,89412476	1.000000
adrenal_gland_female_adult_53_years	chr17	35432507	35432534	35432507	-	High_confidence	3	3	15	0.704209	3.640224	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	1.000000
adrenal_gland_female_adult_53_years	chr18	50843101	50843104	50843101	-	RAMPAGE_only	17	17	43	2.018733	4.496633	chr18	50842925	50843332	LTR|ERVL|MLT2D	-	chr18	50798376	50825402	MRO|ENST00000428869.6	-	50798376,50800035,50801348,50805153,50806703,50809301,50816123,50819580,50825308	50799390,50800143,50801504,50805336,50806850,50809404,50816162,50819702,50825402	1.000000
adrenal_gland_female_adult_53_years	chr12	104287705	104287739	104287705	+	High_confidence	2	2	7	0.328631	2.521641	chr12	104287727	104287918	SINE|MIR|MIR	+	chr12	104287367	104348644	TXNRD1|ENST00000524698.5	+	104287367,104288930,104311289,104313244,104315776,104318912,104319469,104321090,104325336,104326346,104327514,104331533,104334236,104339138,104348352	104287431,104289040,104311412,104313317,104315896,104319055,104319585,104321316,104325429,104326423,104327671,104331641,104334332,104339273,104348644	1.000000
adrenal_gland_female_adult_53_years	chr2	203533404	203533440	203533429	-	High_confidence	17	26	74	3.474099	5.176191	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.797297
adrenal_gland_female_adult_53_years	chr7	64993242	64993271	64993242	-	RAMPAGE_only	3	4	12	0.563367	3.277613	chr7	64990915	64999343	LTR|ERV1|HERV3-int	-	chr7	64990808	64999430	STRG.22680.9	-	64990808,64999120	64993414,64999430	0.750000
adrenal_gland_female_adult_53_years	chr7	11192786	11192819	11192802	+	RAMPAGE_only	3	5	15	0.704209	3.132915	chr7	11192822	11192883	LINE|L1|L1MA1	+	chr7	11181731	11227655	AC004160.1|ENST00000599917.5	+	11181731,11188538,11192994,11197309,11227017,11227516	11181836,11188634,11193050,11197444,11227064,11227655	0.533333
adrenal_gland_female_adult_53_years	chr9	123758083	123758104	123758103	-	High_confidence	17	18	53	2.488206	4.625679	chr9	123758093	123758254	SINE|MIR|MIRb	-	chr9	123569544	123757759	DENND1A|ENST00000474676.1	-	123569544,123583168,123609435,123630375,123652012,123667025,123671290,123757702	123569595,123583270,123609481,123630476,123652123,123667079,123671371,123757759	0.924528
adrenal_gland_female_adult_53_years	chr5	151687244	151687252	151687244	-	High_confidence	18	19	48	2.253470	4.576496	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151662487	151687241	STRG.18057.1	-	151662487,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687241	0.937500
adrenal_gland_female_adult_53_years	chr2	27910837	27910914	27910882	+	RAMPAGE_only	20	22	71	3.333258	5.190117	chr2	27910851	27911226	LTR|ERVL-MaLR|THE1C	+	chr2	27894619	28025488	BABAM2|ENST00000604932.1	+	27894619,27929831,27987992,28025225	27894684,27929908,27988087,28025488	0.732394
adrenal_gland_female_adult_53_years	chr19	20611616	20611622	20611621	+	High_confidence	6	8	15	0.704209	3.323231	chr19	20611625	20612547	LTR|ERV1|HERV3-int	+	chr19	20611558	20615389	AC010636.1|ENST00000598116.1	+	20611558,20615058	20611855,20615389	0.800000
adrenal_gland_female_adult_53_years	chr2	110118141	110118147	110118146	-	RAMPAGE_only	11	12	25	1.173682	3.253661	chr2	110117625	110118184	LINE|L1|L1MD2	-	chr2	110083869	110116566	MALL|NM_005434.4	-	110083869,110087571,110091602,110115687	110085757,110087697,110091770,110116566	1.000000
adrenal_gland_female_adult_53_years	chr4	2867795	2867857	2867835	+	High_confidence	78	79	513	24.083960	6.892395	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.990253
adrenal_gland_female_adult_53_years	chr6	79998981	79999008	79998981	+	RAMPAGE_only	7	11	16	0.751157	3.702820	chr6	79997894	79999302	LINE|L1|L1MEc	-	chr6	80003886	80042527	TTK|ENST00000509894.5	+	80003886,80005841,80007808,80008385,80010813,80011433,80011728,80011885,80013278,80014462,80022323,80026380,80027884,80031466,80034984,80035265,80036474,80037966,80039695,80040195,80040605,80042118	80004713,80005982,80008031,80008492,80010957,80011548,80011801,80011980,80013366,80014586,80022472,80026514,80028011,80031559,80035142,80035417,80036599,80038047,80039872,80040280,80040703,80042527	0.937500
adrenal_gland_female_adult_53_years	chr2	72693353	72693354	72693353	-	RAMPAGE_only	7	7	8	0.375578	2.521641	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.875000
adrenal_gland_female_adult_53_years	chr5	78549216	78549268	78549227	-	High_confidence	7	13	42	1.971786	3.922113	chr5	78548966	78549452	LTR|ERVL-MaLR|MLT1H	-	chr5	78485214	78549151	LHFPL2|ENST00000515007.6	-	78485214,78509783,78549025	78489153,78510398,78549151	0.952381
adrenal_gland_female_adult_53_years	chr3	134485443	134485496	134485443	-	High_confidence	18	19	126	5.915359	5.947219	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.904762
adrenal_gland_female_adult_53_years	chr11	117836274	117836293	117836274	+	RAMPAGE_only	3	3	11	0.516420	3.277613	chr11	117836254	117836523	SINE|Alu|AluJb	-	chr11	117833892	117837655	AP000757.1|ENST00000525260.5	+	117833892,117836268,117837167	117834061,117836502,117837655	1.000000
adrenal_gland_female_adult_53_years	chr9	39810023	39810118	39810033	-	High_confidence	34	34	171	8.027987	5.716905	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803268	39810013	STRG.27456.2	-	39803268,39809485,39809730	39803859,39809615,39810013	0.853801
adrenal_gland_female_adult_53_years	chr6	125219531	125219538	125219531	+	High_confidence	2	2	9	0.422526	2.750000	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.777778
adrenal_gland_female_adult_53_years	chr15	90420200	90420205	90420200	+	RAMPAGE_only	4	4	8	0.375578	2.807355	chr15	90420174	90420357	SINE|MIR|MIRb	-	chr15	90388276	90440528	IQGAP1|ENST00000560418.1	+	90388276,90426109,90429588,90431220,90433718,90439331,90440501	90388396,90426266,90429666,90431252,90433795,90439399,90440528	0.625000
adrenal_gland_female_adult_53_years	chr1	31376356	31376357	31376356	-	High_confidence	9	9	9	0.422526	2.641604	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365720	31376357	STRG.858.2	-	31365720,31367392,31369384,31372941,31376355	31365939,31367494,31369557,31373041,31376357	0.888889
adrenal_gland_female_adult_53_years	chrX	47179158	47179159	47179158	+	High_confidence	7	8	8	0.375578	2.521641	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	0.875000
adrenal_gland_female_adult_53_years	chr20	50130077	50130099	50130092	-	RAMPAGE_only	4	4	12	0.563367	3.277613	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.833333
adrenal_gland_female_adult_53_years	chr18	36807869	36807888	36807869	-	High_confidence	20	21	32	1.502313	4.309035	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.656250
adrenal_gland_female_adult_53_years	chr9	73160352	73160376	73160375	+	High_confidence	3	3	6	0.281684	2.584963	chr9	73160421	73160511	SINE|MIR|MIR	+	chr9	73160284	73165544	ANXA1|ENST00000489109.1	+	73160284,73160802,73162781,73163475,73165115	73160376,73160893,73162861,73163532,73165544	0.833333
adrenal_gland_female_adult_53_years	chr9	13386132	13386133	13386132	+	RAMPAGE_only	14	15	16	0.751157	3.452820	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.937500
adrenal_gland_female_adult_53_years	chr2	241235121	241235130	241235121	-	RAMPAGE_only	7	7	13	0.610315	3.251629	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241230774	241236664	HDLBP|ENST00000470482.5	-	241230774,241233819,241235120,241235489,241236614	241230944,241233963,241235275,241235594,241236664	0.538462
adrenal_gland_female_adult_53_years	chr3	28347646	28347654	28347653	-	High_confidence	17	17	30	1.408419	4.298069	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.833333
adrenal_gland_female_adult_53_years	chr1	228103441	228103494	228103470	+	High_confidence	5	6	35	1.643155	4.250572	chr1	228103518	228103807	SINE|Alu|AluSz	+	chr1	228103419	228104591	STRG.4663.1	+	228103419	228104591	0.914286
adrenal_gland_female_adult_53_years	chr3	99881590	99881607	99881590	+	RAMPAGE_only	5	5	12	0.563367	3.022055	chr3	99881537	99881832	SINE|Alu|AluSx	-	chr3	99817882	100172404	CMSS1|ENST00000491299.5	+	99817882,100141529,100146972,100160429,100162302,100166334,100167737,100171838,100172315	99818043,100141645,100147061,100160501,100162432,100166394,100167840,100171899,100172404	0.750000
adrenal_gland_female_adult_53_years	chr4	79493495	79493500	79493499	+	High_confidence	4	4	9	0.422526	2.947703	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492592	79586752	STRG.14236.3	+	79492592,79493151,79513784,79585147	79492623,79493585,79513902,79586752	0.666667
adrenal_gland_female_adult_53_years	chr5	176411455	176411459	176411458	-	RAMPAGE_only	6	8	12	0.563367	3.277613	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.750000
adrenal_gland_female_adult_53_years	chr14	50159433	50159441	50159440	-	RAMPAGE_only	5	6	9	0.422526	2.500000	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.888889
adrenal_gland_female_adult_53_years	chr12	50924027	50924038	50924027	+	High_confidence	5	5	11	0.516420	3.321928	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50924004	50929955	METTL7A|ENST00000550502.1	+	50924004,50925036,50929913	50924080,50925536,50929955	0.545455
adrenal_gland_female_adult_53_years	chr4	87503011	87503054	87503053	-	RAMPAGE_only	6	6	16	0.751157	3.750000	chr4	87502566	87503540	LINE|L1|HAL1	-	chr4	87494416	87528619	SPARCL1|ENST00000535835.5	-	87494416,87494980,87499520,87504821,87528554	87494598,87495127,87499585,87504923,87528619	0.500000
adrenal_gland_female_adult_53_years	chr4	128428000	128428006	128428000	+	High_confidence	18	19	48	2.253470	4.886842	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.895833
adrenal_gland_female_adult_53_years	chr12	111791861	111791862	111791861	+	High_confidence	9	9	14	0.657262	3.182006	chr12	111791747	111791914	SINE|Alu|AluJb	+	chr12	111792610	111809670	ALDH2|ENST00000549106.1	+	111792610,111798077,111803858,111809542	111792782,111798242,111803973,111809670	0.928571
adrenal_gland_female_adult_53_years	chr9	72918957	72918998	72918957	-	RAMPAGE_only	5	6	17	0.798104	3.625000	chr9	72918948	72919050	SINE|Alu|AluSx3	-	chr9	72900661	72953055	ALDH1A1|ENST00000297785.7	-	72900661,72905957,72909601,72911957,72916919,72918719,72924018,72925483,72927115,72928891,72930878,72940147,72952934	72901280,72906032,72909759,72912122,72917104,72918822,72924132,72925612,72927177,72929021,72931019,72940252,72953055	0.941176
adrenal_gland_female_adult_53_years	chr9	20658568	20658608	20658568	+	High_confidence	9	9	56	2.629048	4.661933	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658311	20770112	STRG.27176.6	+	20658311,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.821429
adrenal_gland_female_adult_53_years	chr9	111284874	111284875	111284874	-	High_confidence	15	15	16	0.751157	3.456565	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.875000
adrenal_gland_female_adult_53_years	chr3	33864065	33864121	33864081	+	RAMPAGE_only	6	6	25	1.173682	4.323856	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	1.000000
adrenal_gland_female_adult_53_years	chr5	180909572	180909573	180909572	+	High_confidence	19	20	21	0.985893	3.787144	chr5	180909597	180909731	SINE|Alu|FLAM_C	+	chr5	180909572	180948353	BTNL8|ENST00000514448.5	+	180909572,180911338,180947511	180909697,180911614,180948353	0.666667
adrenal_gland_female_adult_53_years	chr2	130692973	130692992	130692973	+	High_confidence	1	1	6	0.281684	2.584963	chr2	130693010	130693142	SINE|Alu|AluY	+	chr2	130693281	130696388	FAR2P3|ENST00000434289.1	+	130693281,130696341	130693796,130696388	0.666667
adrenal_gland_female_adult_53_years	chr7	107069835	107069862	107069835	+	RAMPAGE_only	8	8	24	1.126735	4.001823	chr7	107069817	107070165	LINE|L1|L1ME4c	-	chr7	107091675	107146462	PRKAR2B|ENST00000488792.1	+	107091675,107121951,107128211,107140846,107146307	107091885,107122004,107128295,107140953,107146462	0.666667
adrenal_gland_female_adult_53_years	chr13	50715096	50715121	50715096	-	High_confidence	9	9	19	0.891999	3.826875	chr13	50714806	50715412	LTR|ERVL-MaLR|MLT1E2	-	chr13	50711304	50715362	STRG.37609.1	-	50711304,50714877	50713240,50715362	1.000000
adrenal_gland_female_adult_53_years	chr1	223771312	223771338	223771312	+	High_confidence	2	2	9	0.422526	2.750000	chr1	223771209	223771420	LTR|ERVL-MaLR|MLT1J	-	chr1	223770622	223776018	CAPN2|ENST00000463997.1	+	223770622,223772180,223774833	223771925,223772239,223776018	0.888889
adrenal_gland_female_adult_53_years	chr11	57426754	57426755	57426754	-	High_confidence	18	18	21	0.985893	4.121928	chr11	57426722	57426811	SINE|MIR|MIRb	-	chr11	57407405	57426752	SLC43A3|ENST00000529554.5	-	57407405,57409174,57409934,57414614,57414932,57416572,57417747,57420971,57421296,57423981,57425540,57425988,57426587	57407896,57409298,57410121,57414731,57415106,57416670,57417887,57421064,57421373,57424028,57425670,57426352,57426752	0.952381
adrenal_gland_male_adult_54_years	chr4	102431241	102431271	102431247	-	High_confidence	4	5	22	0.834244	3.784942	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.909091
adrenal_gland_male_adult_54_years	chr19	49086520	49086547	49086546	+	High_confidence	21	23	38	1.440967	4.499598	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.657895
adrenal_gland_male_adult_54_years	chr19	3062922	3062983	3062982	-	High_confidence	19	20	95	3.602417	5.439328	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.978947
adrenal_gland_male_adult_54_years	chrX	103517474	103517475	103517474	-	RAMPAGE_only	35	37	50	1.896009	5.012470	chrX	103517347	103517455	SINE|MIR|MIR3	-	chrX	103437161	103461589	STRG.104931.1	-	103437161,103461517	103437766,103461589	0.660000
adrenal_gland_male_adult_54_years	chrX	119127808	119127814	119127811	-	High_confidence	31	50	114	4.322901	5.735097	chrX	119127624	119127833	LINE|L2|L2a	+	chrX	119078634	119127847	STRG.105264.1	-	119078634,119083014,119085382,119086545,119093666,119096493,119104991,119108336,119109075,119116495,119123581,119127726	119081504,119083120,119085546,119089746,119093775,119096691,119105147,119108471,119109202,119116664,119123652,119127847	0.982456
adrenal_gland_male_adult_54_years	chr2	201458835	201458854	201458835	+	RAMPAGE_only	7	8	12	0.455042	3.418296	chr2	201458879	201459004	SINE|Alu|FLAM_C	+	chr2	201451795	201480846	STRADB|ENST00000392249.6	+	201451795,201454745,201458783,201469952,201472954,201474646,201475618,201477618,201478086,201478356,201479488,201480007	201451938,201454852,201458864,201470052,201473076,201474755,201475742,201477790,201478191,201478601,201479531,201480846	1.000000
adrenal_gland_male_adult_54_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	24	24	24	0.910084	3.490602	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
adrenal_gland_male_adult_54_years	chr11	61354299	61354321	61354299	-	High_confidence	4	4	12	0.455042	2.855389	chr11	61354208	61354347	SINE|Alu|FRAM	+	chr11	61351058	61354741	CYB561A3|ENST00000540139.5	-	61351058,61352984,61353783	61351147,61353139,61354741	1.000000
adrenal_gland_male_adult_54_years	chr3	114759252	114759277	114759276	-	High_confidence	19	19	40	1.516807	4.353056	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.700000
adrenal_gland_male_adult_54_years	chrX	71383108	71383125	71383124	+	RAMPAGE_only	5	5	10	0.379202	3.121928	chrX	71383170	71383464	LINE|L1|L1MC5a	+	chrX	71387085	71388301	TAF1|ENST00000472567.1	+	71387085,71388236	71387461,71388301	0.500000
adrenal_gland_male_adult_54_years	chr17	47056606	47056632	47056631	-	RAMPAGE_only	2	2	9	0.341282	2.750000	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.666667
adrenal_gland_male_adult_54_years	chr12	47223495	47223548	47223547	+	High_confidence	39	39	108	4.095380	6.013785	chr12	47223277	47223596	LINE|L2|L2	-	chr12	47223500	47235566	PCED1B|ENST00000549630.1	+	47223500,47235006	47223672,47235566	0.620370
adrenal_gland_male_adult_54_years	chr11	71999605	71999627	71999614	+	High_confidence	31	49	144	5.460507	4.903171	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.965278
adrenal_gland_male_adult_54_years	chr17	28229995	28230029	28230013	-	RAMPAGE_only	25	25	110	4.171220	5.073100	chr17	28229876	28230134	LTR|ERVL-MaLR|MLT1J2	-	chr17	28202799	28206313	STRG.88997.1	-	28202799	28206313	0.754545
adrenal_gland_male_adult_54_years	chr16	29963560	29963579	29963560	+	High_confidence	4	5	10	0.379202	3.121928	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.700000
adrenal_gland_male_adult_54_years	chr3	191425524	191425528	191425527	+	High_confidence	6	8	11	0.417122	3.277613	chr3	191425335	191425687	LTR|ERVL-MaLR|THE1B	+	chr3	191425527	191591097	AC073365.1|ENST00000641055.1	+	191425527,191473550,191557261,191559677,191569599,191573313,191589902	191425604,191473688,191557384,191559750,191569824,191573474,191591097	1.000000
adrenal_gland_male_adult_54_years	chr7	21851147	21851190	21851174	+	High_confidence	21	22	148	5.612187	4.970351	chr7	21851065	21851438	LTR|ERVL-MaLR|THE1C	+	chr7	21851161	21902230	STRG.45101.3	+	21851161,21852466,21854314,21861852,21864534,21866469,21867858,21868863,21873273,21880701,21884290,21892424,21894622,21894883,21899335,21899979,21901006	21851320,21852631,21854455,21862023,21864657,21866663,21868007,21868991,21873501,21880893,21884410,21892667,21894805,21894999,21899448,21900120,21902230	0.993243
adrenal_gland_male_adult_54_years	chr3	28137002	28137034	28137002	-	High_confidence	14	18	29	1.099685	4.384517	chr3	28136955	28138097	LINE|L2|L2b	-	chr3	28089203	28136989	STRG.19663.1	-	28089203,28132800,28136793	28091362,28133078,28136989	0.793103
adrenal_gland_male_adult_54_years	chr11	46865469	46865472	46865469	-	RAMPAGE_only	4	4	10	0.379202	2.947703	chr11	46865442	46865504	LINE|CR1|L3	+	chr11	46856869	46862933	LRP4|ENST00000529604.1	-	46856869,46862605	46859315,46862933	0.900000
adrenal_gland_male_adult_54_years	chr3	179681656	179681670	179681665	+	RAMPAGE_only	29	36	72	2.730253	5.393429	chr3	179681222	179681750	LTR|ERV1|LTR6A	-	chr3	179653692	179784406	USP13|ENST00000496897.5	+	179653692,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653750,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179784406	0.972222
adrenal_gland_male_adult_54_years	chr5	139364707	139364720	139364719	+	RAMPAGE_only	4	5	17	0.644643	3.734522	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.705882
adrenal_gland_male_adult_54_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	22	23	24	0.910084	4.186704	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.666667
adrenal_gland_male_adult_54_years	chr1	207745580	207745581	207745580	+	RAMPAGE_only	9	9	10	0.379202	2.947703	chr1	207745199	207747909	LTR|ERV1|HUERS-P3b-int	+	chr1	207752037	207795516	CD46|NM_002389.4	+	207752037,207757013,207757539,207759638,207761248,207767012,207767606,207767778,207770320,207783291,207785070,207785618,207790252,207793518	207752309,207757202,207757642,207759724,207761446,207767195,207767651,207767823,207770362,207783330,207785106,207785682,207790345,207795516	0.600000
adrenal_gland_male_adult_54_years	chr6	36505073	36505091	36505073	-	RAMPAGE_only	2	2	9	0.341282	2.750000	chr6	36505057	36505226	DNA|hAT-Charlie|MER5B	+	chr6	36493891	36517525	STRG.39195.2	-	36493891,36496710,36497779,36498362,36506582,36507499,36515337	36495914,36496805,36497875,36499990,36506644,36507602,36517525	0.888889
adrenal_gland_male_adult_54_years	chr13	24284218	24284219	24284218	+	RAMPAGE_only	4	5	7	0.265441	2.807355	chr13	24284180	24284220	LINE|CR1|L3	+	chr13	24270687	24303904	SPATA13|ENST00000399949.6	+	24270687,24284134,24286213,24286764,24288998,24290651,24294738,24297362,24300400,24302597	24270912,24284271,24286393,24286950,24289178,24290884,24294868,24297735,24300475,24303904	1.000000
adrenal_gland_male_adult_54_years	chr15	67851453	67851458	67851455	+	RAMPAGE_only	9	15	34	1.289286	4.202820	chr15	67851260	67851613	LTR|ERVL-MaLR|MSTA	+	chr15	67833081	67873866	AC009292.2|ENST00000560577.1	+	67833081,67873696	67833257,67873866	0.500000
adrenal_gland_male_adult_54_years	chr7	131108707	131108708	131108707	-	RAMPAGE_only	20	20	22	0.834244	3.821928	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944159	131109916	LINC-PINT|NR_109854.1	-	130944159,130945719,130984052,131052424,131107719,131109736	130944889,130945791,130984109,131052555,131108803,131109916	0.909091
adrenal_gland_male_adult_54_years	chr5	173790908	173790942	173790941	-	High_confidence	2	2	8	0.303361	2.521641	chr5	173790732	173790899	DNA|hAT-Tip100|MER115	-	chr5	173786789	173790942	LINC01485|NR_108028.1	-	173786789,173787688,173790635,173790808	173787247,173787745,173790727,173790942	0.875000
adrenal_gland_male_adult_54_years	chr2	171554969	171555830	171555829	+	RAMPAGE_only	45	46	837	31.739194	6.662453	chr2	171555665	171555905	SINE|MIR|MIR	-	chr2	171522476	171557646	CYBRD1|ENST00000375252.3	+	171522476,171553345,171554523	171522738,171553500,171557646	1.000000
adrenal_gland_male_adult_54_years	chr8	16186260	16186272	16186271	-	High_confidence	14	14	25	0.948005	4.163856	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.800000
adrenal_gland_male_adult_54_years	chr11	65436520	65436788	65436622	+	RAMPAGE_only	11	12	138	5.232985	3.397725	chr11	65436611	65437060	LINE|L1|L1ME4b	-	chr11	65423637	65445540	STRG.66558.14	+	65423637,65432397	65432372,65445540	0.978261
adrenal_gland_male_adult_54_years	chr20	56367435	56367456	56367455	+	RAMPAGE_only	5	7	16	0.606723	3.577820	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	1.000000
adrenal_gland_male_adult_54_years	chr8	123202330	123202379	123202378	-	High_confidence	4	4	22	0.834244	2.941446	chr8	123202116	123202636	LINE|L2|L2b	+	chr8	123201171	123202743	FAM83A-AS1|ENST00000520576.5	-	123201171,123202207	123201982,123202743	0.909091
adrenal_gland_male_adult_54_years	chr21	29077486	29077517	29077486	+	High_confidence	17	19	57	2.161450	5.363506	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077474	29091576	MAP3K7CL|ENST00000419845.5	+	29077474,29080551,29085812,29091500	29077713,29080708,29085917,29091576	0.596491
adrenal_gland_male_adult_54_years	chr5	50443257	50443279	50443258	-	High_confidence	10	15	32	1.213446	4.437500	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.750000
adrenal_gland_male_adult_54_years	chr3	28291847	28291848	28291847	+	High_confidence	13	13	16	0.606723	2.973557	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.750000
adrenal_gland_male_adult_54_years	chr3	9787784	9787802	9787784	-	High_confidence	4	4	12	0.455042	3.022055	chr3	9787746	9788031	LINE|L2|L2c	-	chr3	9779966	9788083	TADA3|ENST00000492103.1	-	9779966,9784027,9785315,9787005,9787198	9780549,9784213,9785425,9787109,9788083	1.000000
adrenal_gland_male_adult_54_years	chr5	151158489	151158518	151158498	-	High_confidence	15	15	44	1.668488	4.925119	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.886364
adrenal_gland_male_adult_54_years	chr10	30999418	30999419	30999418	-	High_confidence	10	10	14	0.530883	3.093069	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30998722	30999323	STRG.60007.1	-	30998722	30999323	0.571429
adrenal_gland_male_adult_54_years	chr7	87040212	87040249	87040212	-	High_confidence	8	8	27	1.023845	3.926572	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	87039765	87040286	STRG.47035.1	-	87039765	87040286	0.703704
adrenal_gland_male_adult_54_years	chr15	45204945	45204970	45204945	+	High_confidence	13	26	39	1.478887	4.753226	chr15	45204971	45205116	DNA|hAT-Charlie|MER5A1	+	chr15	45204900	45211040	STRG.82328.1	+	45204900,45210317	45205158,45211040	0.512821
adrenal_gland_male_adult_54_years	chr5	70401444	70401543	70401502	+	RAMPAGE_only	12	12	110	4.171220	5.379493	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.972727
adrenal_gland_male_adult_54_years	chr2	127765174	127765175	127765174	-	RAMPAGE_only	12	12	14	0.530883	3.664498	chr2	127765110	127765160	LINE|CR1|L3	-	chr2	127750914	127811147	STRG.14091.3	-	127750914,127753220,127765173,127768188,127768932,127770777,127811011	127752330,127764979,127765269,127768293,127769001,127771004,127811147	0.785714
adrenal_gland_male_adult_54_years	chr8	26656921	26656936	26656935	+	RAMPAGE_only	7	7	13	0.492962	3.584963	chr8	26656926	26657015	SINE|MIR|MIRc	-	chr8	26578404	26658177	DPYSL2|NM_001244604.1	+	26578404,26581968,26583798,26624142,26626616,26627214,26627871,26634779,26643438,26643949,26647629,26652256,26653231,26655614	26578533,26582057,26583983,26624307,26626678,26627295,26627940,26634900,26643595,26644091,26647800,26652436,26653397,26658177	0.923077
adrenal_gland_male_adult_54_years	chr12	53251623	53251658	53251653	+	High_confidence	12	14	46	1.744328	4.523948	chr12	53251547	53251701	SINE|MIR|MIRc	-	chr12	53251652	53253752	MFSD5|ENST00000551660.2	+	53251652,53252817	53252035,53253752	0.956522
adrenal_gland_male_adult_54_years	chr11	77129913	77129916	77129913	+	RAMPAGE_only	6	8	14	0.530883	2.565448	chr11	77129511	77129953	LINE|L2|L2b	-	chr11	77128301	77214954	MYO7A|ENST00000409619.6	+	77128301,77130588,77139400,77142708,77147797,77155906,77156659,77156861,77157278,77158276,77159446,77160162,77160972,77162119,77162852,77166055,77172747,77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353,77197480,77198494,77199648,77201447,77202299,77203059,77204075,77205461,77206096,77207288,77208429,77208696,77211151,77211820,77212951,77213859,77214606	77128489,77130652,77139480,77142822,77147950,77156091,77156781,77157004,77157392,77158430,77159523,77160282,77161115,77162330,77162988,77166162,77172885,77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194524,77197598,77198621,77199818,77201638,77202424,77203217,77204229,77205617,77206202,77207402,77208517,77208803,77211337,77211937,77213035,77213979,77214954	0.928571
adrenal_gland_male_adult_54_years	chr10	74438137	74438147	74438137	+	RAMPAGE_only	2	3	8	0.303361	2.521641	chr10	74437274	74438232	LINE|L2|L2a	+	chr10	74176685	74709303	ADK|ENST00000372734.3	+	74176685,74200763,74224537,74314666,74394140,74398470,74525255,74589281,74600378,74670182,74708320	74176886,74200838,74224591,74314745,74394313,74398579,74525426,74589317,74600493,74670269,74709303	0.875000
adrenal_gland_male_adult_54_years	chr11	65126217	65126344	65126343	+	RAMPAGE_only	5	5	35	1.327206	4.395999	chr11	65126137	65126433	SINE|Alu|AluSx1	-	chr11	65124724	65127363	MRPL49|ENST00000532671.1	+	65124724,65125725	65125612,65127363	0.971429
adrenal_gland_male_adult_54_years	chr18	7946878	7946898	7946878	+	High_confidence	277	278	732	27.757575	6.448754	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.797814
adrenal_gland_male_adult_54_years	chr2	46903127	46903200	46903169	-	RAMPAGE_only	4	4	22	0.834244	3.546439	chr2	46903002	46903353	LTR|ERVL-MaLR|THE1A	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.909091
adrenal_gland_male_adult_54_years	chr19	7893570	7893596	7893595	+	High_confidence	11	13	25	0.948005	4.213661	chr19	7893546	7893832	SINE|Alu|AluSg	-	chr19	7893595	7898808	LRRC8E|ENST00000593511.1	+	7893595,7895598,7898660	7893859,7895741,7898808	0.520000
adrenal_gland_male_adult_54_years	chr4	103085357	103085380	103085377	-	RAMPAGE_only	2	3	10	0.379202	2.725481	chr4	103085151	103085336	DNA|hAT-Charlie|MER58A	-	chr4	103079478	103099808	BDH2|ENST00000464039.5	-	103079478,103082080,103082870,103085348,103091176,103092599,103095202,103096182,103098643,103099782	103079755,103082173,103082929,103086540,103091285,103092696,103095281,103096274,103099400,103099808	0.700000
adrenal_gland_male_adult_54_years	chr19	49958121	49958149	49958138	-	High_confidence	3	3	14	0.530883	3.238901	chr19	49958017	49958143	LTR|ERV1|LTR61	+	chr19	49949669	49958458	SIGLEC11|ENST00000426296.1	-	49949669,49951890,49958282	49950236,49951972,49958458	0.714286
adrenal_gland_male_adult_54_years	chr5	38881726	38881741	38881740	+	RAMPAGE_only	3	3	11	0.417122	2.646439	chr5	38881676	38881753	SINE|tRNA-Deu|AmnSINE2	+	chr5	38845998	38886739	OSMR|NM_001323504.1	+	38845998,38869031,38876200,38881592,38883826,38885348,38886038	38846387,38869117,38876373,38881764,38884111,38885484,38886739	0.909091
adrenal_gland_male_adult_54_years	chr16	15006394	15006404	15006394	+	RAMPAGE_only	16	19	34	1.289286	4.288910	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.735294
adrenal_gland_male_adult_54_years	chrX	15353126	15353137	15353133	-	RAMPAGE_only	7	7	14	0.530883	3.392747	chrX	15352993	15353083	DNA|hAT-Ac|OldhAT1	-	chrX	15345971	15347475	VEGFD|ENST00000488351.1	-	15345971,15347163	15346259,15347475	0.928571
adrenal_gland_male_adult_54_years	chr2	240022181	240022324	240022181	-	RAMPAGE_only	71	75	252	9.555886	3.911477	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.992063
adrenal_gland_male_adult_54_years	chr2	202565188	202565199	202565198	+	RAMPAGE_only	3	3	8	0.303361	2.521641	chr2	202565124	202565329	LINE|CR1|L3b	-	chr2	202377433	202567751	BMPR2|ENST00000374574.2	+	202377433,202464808,202467518,202513718,202514887,202518821,202520086,202530793,202532584,202542310,202552715,202559695	202377550,202464979,202467689,202513829,202514979,202519052,202520201,202530954,202532732,202542447,202552888,202567751	0.875000
adrenal_gland_male_adult_54_years	chr2	46903245	46903357	46903356	-	RAMPAGE_only	12	17	68	2.578573	5.260041	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	1.000000
adrenal_gland_male_adult_54_years	chr8	47998202	47998235	47998227	+	RAMPAGE_only	2	3	8	0.303361	2.500000	chr8	47995253	47998768	LTR|ERV1|HERVFH21-int	-	chr8	48008399	48064708	UBE2V2|ENST00000523111.6	+	48008399,48043032,48049852,48060681	48008470,48043181,48049978,48064708	1.000000
adrenal_gland_male_adult_54_years	chr2	27910978	27911013	27911012	+	RAMPAGE_only	7	7	22	0.834244	3.879664	chr2	27910851	27911226	LTR|ERVL-MaLR|THE1C	+	chr2	27894619	28025488	BABAM2|ENST00000604932.1	+	27894619,27929831,27987992,28025225	27894684,27929908,27988087,28025488	0.772727
adrenal_gland_male_adult_54_years	chr14	102235451	102235472	102235458	-	High_confidence	14	14	36	1.365127	3.917626	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.944444
adrenal_gland_male_adult_54_years	chr15	92914950	92914974	92914950	+	High_confidence	10	10	33	1.251366	4.597276	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.666667
adrenal_gland_male_adult_54_years	chr8	11864387	11864419	11864387	-	RAMPAGE_only	6	6	16	0.606723	3.773557	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.500000
adrenal_gland_male_adult_54_years	chr21	26468209	26468250	26468249	-	RAMPAGE_only	8	8	18	0.682563	3.969816	chr21	26468074	26468343	LINE|CR1|L3	-	chr21	26466208	26573176	STRG.99406.3	-	26466208,26480271,26566265,26572867	26468634,26480429,26566368,26573176	0.944444
adrenal_gland_male_adult_54_years	chr15	89196416	89196470	89196469	+	RAMPAGE_only	17	21	33	1.251366	3.143514	chr15	89196302	89196472	SINE|MIR|MIR3	+	chr15	89088149	89202360	ABHD2|NM_007011.7	+	89088149,89090282,89102499,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89202360	1.000000
adrenal_gland_male_adult_54_years	chr4	86453164	86453203	86453202	-	High_confidence	12	12	83	3.147375	4.759692	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.843373
adrenal_gland_male_adult_54_years	chr19	7515244	7515264	7515244	+	High_confidence	3	4	17	0.644643	3.625000	chr19	7514930	7515246	LTR|ERV1|MER90	-	chr19	7515291	7519751	ZNF358|ENST00000596712.1	+	7515291,7519204	7515406,7519751	0.882353
adrenal_gland_male_adult_54_years	chr15	51357241	51357242	51357241	+	RAMPAGE_only	8	8	9	0.341282	2.750000	chr15	51357132	51357320	LTR|ERV1|LTR12F	+	chr15	51360253	51384414	GLDN|ENST00000559317.5	+	51360253,51377448,51383435,51383784	51360537,51377500,51383453,51384414	0.555556
adrenal_gland_male_adult_54_years	chr11	65431719	65431785	65431761	+	RAMPAGE_only	4	5	36	1.365127	4.493150	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65423637	65445540	STRG.66558.14	+	65423637,65432397	65432372,65445540	0.972222
adrenal_gland_male_adult_54_years	chr7	66795519	66795534	66795533	+	RAMPAGE_only	5	5	15	0.568803	2.896292	chr7	66795573	66795610	DNA|hAT-Tip100|MamTip2	+	chr7	66797371	66808064	RABGEF1|ENST00000461017.1	+	66797371,66799322,66805139,66807837	66797506,66799414,66805396,66808064	0.933333
adrenal_gland_male_adult_54_years	chr1	31376356	31376357	31376356	-	High_confidence	7	7	7	0.265441	2.521641	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.857143
adrenal_gland_male_adult_54_years	chr22	42644615	42644622	42644621	-	High_confidence	6	6	12	0.455042	2.913977	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	0.916667
adrenal_gland_male_adult_54_years	chr13	43055406	43055412	43055406	+	RAMPAGE_only	26	26	43	1.630568	4.735362	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.581395
adrenal_gland_male_adult_54_years	chr12	64715259	64715496	64715344	-	RAMPAGE_only	38	39	208	7.887398	6.146305	chr12	64715237	64715536	SINE|Alu|AluSx3	+	chr12	64713444	64752871	GNS|ENST00000418919.6	-	64713444,64720021,64721594,64723005,64728955,64737003,64739380,64740605,64743140,64744808,64745658,64747711,64752697	64716819,64720182,64721705,64723113,64729057,64737107,64739499,64740688,64743308,64744907,64745724,64747918,64752871	0.995192
adrenal_gland_male_adult_54_years	chr10	92826819	92826851	92826850	+	High_confidence	3	3	9	0.341282	3.000000	chr10	92826510	92827023	LINE|L2|L2a	-	chr10	92826830	93059494	EXOC6|NM_001013848.3	+	92826830,92834712,92893348,92894793,92894929,92899598,92909426,92915757,92919981,92928338,92934143,92934309,92935813,92940726,92948273,92952272,92954629,92955579,92974052,92997473,93014193,93056923,93058222	92826944,92834824,92893520,92894841,92895020,92899644,92909631,92915913,92920050,92928422,92934190,92934430,92935885,92940824,92948379,92952382,92954741,92955714,92974232,92997615,93014267,93057036,93059494	0.888889
adrenal_gland_male_adult_54_years	chr5	78549086	78549118	78549117	-	High_confidence	2	2	6	0.227521	2.584963	chr5	78548966	78549452	LTR|ERVL-MaLR|MLT1H	-	chr5	78485214	78549151	LHFPL2|ENST00000515007.6	-	78485214,78509783,78549025	78489153,78510398,78549151	0.833333
adrenal_gland_male_adult_54_years	chr13	54572234	54572235	54572234	+	High_confidence	16	18	21	0.796324	4.011365	chr13	54572234	54573121	LINE|L1|L1HS	+	chr13	54572242	54582060	STRG.76319.1	+	54572242,54581570	54572379,54582060	0.809524
adrenal_gland_male_adult_54_years	chr15	75879161	75879162	75879161	+	High_confidence	6	7	7	0.265441	2.521641	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75878185	75897062	UBE2Q2|ENST00000563966.1	+	75878185,75879097,75883365,75890434,75890918,75896994	75878360,75879188,75883424,75890483,75891014,75897062	0.857143
adrenal_gland_male_adult_54_years	chr5	173809124	173809138	173809137	-	High_confidence	6	9	23	0.872164	3.132258	chr5	173808847	173809163	SINE|Alu|AluJb	+	chr5	173789274	173809112	STRG.37269.2	-	173789274,173790635,173790808,173808729	173789662,173790727,173790924,173809112	0.956522
adrenal_gland_male_adult_54_years	chr12	12635947	12635951	12635947	+	RAMPAGE_only	6	11	19	0.720483	3.932138	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	1.000000
adrenal_gland_male_adult_54_years	chr3	15341379	15341380	15341379	-	High_confidence	9	10	10	0.379202	2.947703	chr3	15341159	15341407	LINE|L2|L2a	+	chr3	15255649	15341368	SH3BP5|ENST00000408919.7	-	15255649,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341368	0.700000
adrenal_gland_male_adult_54_years	chrX	102339367	102339368	102339367	-	High_confidence	42	46	47	1.782249	4.392779	chrX	102338893	102340240	LTR|ERV1|MER52A	-	chrX	102338860	102339358	STRG.104820.1	-	102338860	102339358	0.829787
adrenal_gland_male_adult_54_years	chr2	46903472	46903623	46903560	-	RAMPAGE_only	49	52	159	6.029309	5.703467	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.993711
adrenal_gland_male_adult_54_years	chr20	45833293	45833315	45833305	-	High_confidence	18	21	112	4.247061	4.525384	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.973214
adrenal_gland_male_adult_54_years	chr11	72217298	72217310	72217309	+	High_confidence	4	4	8	0.303361	2.521641	chr11	72217038	72217322	SINE|Alu|AluSx1	-	chr11	72216830	72221586	FOLR2|ENST00000321324.11	+	72216830,72218572,72220869,72221175,72221469	72216925,72218734,72221058,72221311,72221586	0.750000
adrenal_gland_male_adult_54_years	chr13	46203125	46203148	46203147	-	RAMPAGE_only	2	2	7	0.265441	2.584963	chr13	46203010	46203255	DNA|hAT-Charlie|Charlie29a	-	chr13	46125919	46211348	LCP1|ENST00000398576.6	-	46125919,46130813,46134126,46142291,46143289,46144441,46146907,46148351,46150935,46152779,46154804,46156437,46158521,46158825,46159598,46182110,46183908,46203100,46211292	46127723,46130938,46134250,46142425,46143404,46144520,46147103,46148447,46151078,46152945,46154886,46156570,46158651,46158989,46159686,46182225,46183972,46203230,46211348	0.714286
adrenal_gland_male_adult_54_years	chr8	143281669	143281687	143281686	-	High_confidence	133	147	358	13.575426	4.665843	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.840782
adrenal_gland_male_adult_54_years	chr10	102727672	102727692	102727691	+	RAMPAGE_only	4	4	9	0.341282	2.750000	chr10	102727660	102728003	LINE|L2|L2c	-	chr10	102714635	102739189	SFXN2|ENST00000459894.6	+	102714635,102724935,102726611,102726986,102728430,102729722,102732858,102733553,102735861,102737662	102714681,102724996,102726797,102727157,102728529,102729808,102732908,102733603,102735909,102739189	0.555556
adrenal_gland_male_adult_54_years	chr19	44744976	44744996	44744995	+	RAMPAGE_only	3	3	8	0.303361	2.521641	chr19	44744995	44745093	SINE|MIR|MIR3	-	chr19	44747704	44759486	BCL3|ENST00000403534.7	+	44747704,44751226,44756231,44757016,44757326,44757645,44758245,44759427	44748128,44751380,44756340,44757221,44757415,44757723,44758841,44759486	0.625000
adrenal_gland_male_adult_54_years	chr11	64226142	64226180	64226158	-	High_confidence	147	155	897	34.014405	7.409439	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.953177
adrenal_gland_male_adult_54_years	chr12	118138993	118139017	118139009	+	High_confidence	59	60	172	6.522272	6.078876	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.837209
adrenal_gland_male_adult_54_years	chr7	143279932	143279947	143279932	+	High_confidence	2	2	10	0.379202	2.641604	chr7	143279918	143280020	SINE|MIR|MIRc	+	chr7	143279956	143287296	TMEM139|ENST00000409102.5	+	143279956,143285940,143286423	143280047,143286202,143287296	0.900000
adrenal_gland_male_adult_54_years	chr12	76137156	76137173	76137156	-	RAMPAGE_only	3	3	11	0.417122	2.921928	chr12	76136941	76137163	LINE|L1|L1M5	+	chr12	76036586	76085033	NAP1L1|ENST00000618691.4	-	76036586,76049199,76049755,76050530,76053090,76053204,76053769,76055018,76056032,76059797,76060137,76067370,76068908,76074202,76084566	76048464,76049250,76049785,76050653,76053110,76053350,76053909,76055090,76056161,76059878,76060279,76067473,76068994,76074239,76085033	0.727273
adrenal_gland_male_adult_54_years	chrX	11351675	11351698	11351675	-	RAMPAGE_only	5	5	11	0.417122	2.913977	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.727273
adrenal_gland_male_adult_54_years	chr14	77076182	77076194	77076188	-	High_confidence	40	40	103	3.905779	5.742093	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77073873	77076353	STRG.80181.1	-	77073873,77076104	77074598,77076353	0.766990
adrenal_gland_male_adult_54_years	chr11	65430452	65430816	65430606	+	RAMPAGE_only	28	30	436	16.533200	5.633067	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65423637	65445540	STRG.66558.14	+	65423637,65432397	65432372,65445540	1.000000
adrenal_gland_male_adult_54_years	chr4	185933383	185933447	185933446	-	High_confidence	6	6	31	1.175526	4.232760	chr4	185933361	185933839	LTR|ERVL-MaLR|MLT1C	-	chr4	185775280	185933370	SORBS2|ENST00000488562.1	-	185775280,185894296,185932935	185775366,185894373,185933370	0.709677
adrenal_gland_male_adult_54_years	chr9	92536601	92536675	92536601	-	High_confidence	44	47	161	6.105150	5.911568	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.850932
adrenal_gland_male_adult_54_years	chrX	54440853	54440866	54440853	+	High_confidence	4	4	9	0.341282	2.641604	chrX	54440890	54441048	SINE|MIR|MIRb	+	chrX	54440419	54445297	TSR2|NM_058163.1	+	54440419,54440689,54443399,54444007,54444415	54440502,54440780,54443491,54444184,54445297	1.000000
adrenal_gland_male_adult_54_years	chr7	101217578	101217599	101217578	-	High_confidence	6	6	27	1.023845	3.893661	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.925926
adrenal_gland_male_adult_54_years	chr2	48568986	48568987	48568986	+	High_confidence	9	10	13	0.492962	2.931209	chr2	48569019	48569241	SINE|MIR|MIRb	+	chr2	48569019	48679609	STON1-GTF2A1L|NM_172311.2	+	48569019,48580586,48591652,48620850,48621166,48642401,48645032,48646452,48669721,48671590,48679334	48569086,48582563,48591855,48620952,48621290,48642457,48645117,48647042,48669982,48671680,48679609	1.000000
adrenal_gland_male_adult_54_years	chrX	71198195	71198196	71198195	-	High_confidence	9	9	14	0.530883	3.521641	chrX	71198068	71198187	SINE|MIR|MIR3	-	chrX	71183558	71198175	AL590764.1|ENST00000450860.1	-	71183558,71197908	71184017,71198175	0.714286
adrenal_gland_male_adult_54_years	chr11	8724718	8724725	8724724	-	RAMPAGE_only	6	6	10	0.379202	2.921928	chr11	8724654	8725135	LTR|ERVL|LTR40a	+	chr11	8711121	8726174	ST5|ENST00000530593.5	-	8711121,8712550,8714609,8715602,8717740,8726072	8711231,8712735,8714706,8715818,8717892,8726174	1.000000
adrenal_gland_male_adult_54_years	chr9	108885821	108885872	108885839	-	RAMPAGE_only	824	983	3896	147.737037	7.715718	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108867516	108893083	ELP1|ENST00000495759.5	-	108867516,108874894,108875632,108877994,108878622,108879445,108880051,108881704,108882124,108889331,108891202,108892985	108869182,108874970,108875735,108878149,108878750,108879557,108880165,108881765,108882187,108889393,108891404,108893083	0.939168
adrenal_gland_male_adult_54_years	chr11	69425689	69425709	69425689	+	High_confidence	8	8	20	0.758404	3.300559	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425689	69429621	AP000439.3|ENST00000545202.1	+	69425689,69427362	69425806,69429621	0.900000
adrenal_gland_male_adult_54_years	chr22	41653688	41653689	41653688	+	RAMPAGE_only	8	9	11	0.417122	3.095795	chr22	41653710	41653849	DNA|hAT-Charlie|MER5A	+	chr22	41656952	41661699	XRCC6|ENST00000478914.1	+	41656952,41658251,41661330	41657032,41658352,41661699	0.727273
adrenal_gland_male_adult_54_years	chr7	150330096	150330117	150330116	+	High_confidence	10	11	33	1.251366	4.062383	chr7	150329923	150330471	DNA|hAT-Ac|OldhAT1	+	chr7	150329848	150332721	ZBED6CL|NM_138434.2	+	150329848	150332721	1.000000
adrenal_gland_male_adult_54_years	chrX	5726311	5726356	5726324	-	High_confidence	127	147	248	9.404206	5.433944	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.826613
adrenal_gland_male_adult_54_years	chr1	78620056	78620058	78620057	+	High_confidence	35	65	65	2.464812	4.935121	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.892308
adrenal_gland_male_adult_54_years	chr14	50159440	50159446	50159440	-	RAMPAGE_only	8	8	14	0.530883	3.392747	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50147810	50151519	STRG.78762.9	-	50147810,50150007	50148406,50151519	0.571429
adrenal_gland_male_adult_54_years	chr2	27773572	27773612	27773572	+	RAMPAGE_only	6	6	21	0.796324	3.463281	chr2	27773515	27773671	LINE|L2|L2c	+	chr2	27772189	27779697	MRPL33|ENST00000476552.1	+	27772189,27772673,27774423,27779432	27772385,27772692,27774530,27779697	1.000000
adrenal_gland_male_adult_54_years	chrX	71300084	71300460	71300459	+	RAMPAGE_only	132	155	841	31.890875	6.119434	chrX	71300434	71300519	SINE|Alu|AluSx	-	chrX	71291994	71301168	NONO|ENST00000490044.5	+	71291994,71294218,71296564,71296850,71297376,71297835,71298468,71298706,71299941	71293041,71294528,71296660,71297047,71297461,71297938,71298508,71298816,71301168	1.000000
adrenal_gland_male_adult_54_years	chr13	48492781	48492791	48492790	-	High_confidence	5	7	16	0.606723	3.240224	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.750000
adrenal_gland_male_adult_54_years	chr11	44564426	44564431	44564426	+	High_confidence	2	2	7	0.265441	2.584963	chr11	44564373	44564477	SINE|MIR|MIRc	+	chr11	44564426	44615295	CD82|ENST00000526958.5	+	44564426,44587474,44594642,44600157,44605057,44605354,44615271	44564502,44587556,44594725,44600230,44605182,44605429,44615295	0.857143
adrenal_gland_male_adult_54_years	chr6	129584097	129584106	129584105	-	RAMPAGE_only	3	3	7	0.265441	2.807355	chr6	129583973	129584076	LINE|RTE-BovB|MamRTE1	-	chr6	129578418	129596875	ARHGAP18|ENST00000483367.5	-	129578418,129580069,129583987,129596788	129578604,129580131,129584112,129596875	0.714286
adrenal_gland_male_adult_54_years	chr22	28724885	28724886	28724885	-	High_confidence	16	16	16	0.606723	3.327820	chr22	28724569	28724864	SINE|Alu|AluSp	-	chr22	28687748	28724886	STRG.100792.6	-	28687748,28689134,28694031,28695126,28695709,28696900,28699837,28703504,28710005,28711908,28724885	28687986,28689215,28694117,28695242,28695873,28696987,28699937,28703566,28710059,28712017,28724886	1.000000
adrenal_gland_male_adult_54_years	chr17	63691838	63691851	63691838	+	RAMPAGE_only	2	4	8	0.303361	2.500000	chr17	63691879	63692027	SINE|MIR|MIRc	+	chr17	63622709	63693874	MAP3K3|ENST00000577395.5	+	63622709,63632680,63646033,63652556,63657793,63666939,63681765,63685516,63688526,63688788,63689543,63690263,63691101,63691732,63692241,63693548	63622763,63632802,63646074,63652656,63657907,63667060,63681899,63685578,63688594,63688881,63689735,63690412,63691233,63691862,63692419,63693874	1.000000
adrenal_gland_male_adult_54_years	chr11	72758533	72758595	72758533	-	High_confidence	8	10	42	1.592648	4.452200	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72759309	STARD10|ENST00000537351.5	-	72754728,72755121,72755700,72757766,72758529,72759233	72754782,72755142,72755753,72757884,72758633,72759309	0.595238
adrenal_gland_male_adult_54_years	chr13	48492622	48492656	48492622	-	High_confidence	3	3	10	0.379202	2.921928	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.600000
adrenal_gland_male_adult_54_years	chr5	109383420	109383449	109383446	-	High_confidence	10	10	30	1.137606	4.640224	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
adrenal_gland_male_adult_54_years	chr1	11058815	11058845	11058815	-	RAMPAGE_only	3	3	11	0.417122	2.921928	chr1	11058682	11058785	SINE|MIR|MIRc	-	chr1	11054588	11060024	SRM|ENST00000376957.6	-	11054588,11054961,11055780,11056010,11056603,11058799,11059224,11059776	11054885,11055084,11055926,11056094,11056757,11058892,11059345,11060024	0.909091
adrenal_gland_male_adult_54_years	chr12	79455504	79455537	79455527	-	High_confidence	19	20	57	2.161450	5.063165	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.877193
adrenal_gland_male_adult_54_years	chr15	65577059	65577241	65577143	+	RAMPAGE_only	44	46	201	7.621957	5.195941	chr15	65577153	65577426	SINE|Alu|AluJr	+	chr15	65530488	65578355	HACD3|NM_016395.2	+	65530488,65551675,65554886,65556738,65558679,65562773,65564214,65570090,65571547,65572234,65576302	65530718,65551718,65554960,65556903,65558731,65562884,65564342,65570203,65571654,65572366,65578355	1.000000
adrenal_gland_male_adult_54_years	chr17	59651214	59651265	59651214	+	RAMPAGE_only	4	5	38	1.440967	4.669925	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.868421
adrenal_gland_male_adult_54_years	chr14	88824124	88824139	88824138	+	High_confidence	7	8	12	0.455042	3.251629	chr14	88824007	88824142	SINE|MIR|MIR3	+	chr14	88824152	88853046	TTC8|ENST00000556077.5	+	88824152,88824573,88836907,88839451,88840864,88841036,88841424,88843805,88852970	88824214,88824821,88837066,88839572,88840923,88841196,88841514,88843850,88853046	0.916667
adrenal_gland_male_adult_54_years	chr16	11587444	11587466	11587465	-	High_confidence	10	10	16	0.606723	3.056565	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.937500
adrenal_gland_male_adult_54_years	chr11	62600195	62600217	62600195	-	High_confidence	3	3	11	0.417122	3.095795	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.636364
adrenal_gland_male_adult_54_years	chr7	66430259	66430260	66430259	-	High_confidence	22	22	22	0.834244	4.004886	chr7	66430180	66430480	LTR|ERV1|MER61A	-	chr7	66402087	66430320	STRG.46390.6	-	66402087,66407289,66409059,66411614,66427948,66429678,66429883,66430119	66402545,66407364,66409244,66411702,66428040,66429757,66429932,66430320	0.590909
adrenal_gland_male_adult_54_years	chr11	46274422	46274430	46274422	-	High_confidence	8	8	22	0.834244	3.481715	chr11	46274366	46274400	SINE|MIR|MIR1_Amn	-	chr11	46256354	46274547	LINC02489|ENST00000527239.1	-	46256354,46274380	46256541,46274547	0.727273
adrenal_gland_male_adult_54_years	chr3	129724091	129724117	129724116	-	RAMPAGE_only	28	33	81	3.071535	5.034328	chr3	129724100	129724190	LINE|CR1|L3	+	chr3	129647793	129727206	STRG.23034.4	-	129647793,129654967,129670329,129723963,129726912	129651795,129655103,129671264,129726679,129727206	0.950617
adrenal_gland_male_adult_54_years	chr4	26385909	26385928	26385909	+	RAMPAGE_only	4	4	9	0.341282	2.750000	chr4	26385792	26385970	SINE|Alu|AluJr	-	chr4	26362529	26420725	RBPJ|ENST00000504938.1	+	26362529,26383884,26384528,26386352,26406174,26415474,26420550	26362628,26383960,26384608,26386391,26406270,26415640,26420725	0.666667
adrenal_gland_male_adult_54_years	chr4	123894705	123894772	123894758	+	High_confidence	57	63	212	8.039079	5.688662	chr4	123894654	123894827	SINE|Alu|AluYc	-	chr4	123894713	123930887	STRG.29284.1	+	123894713,123924096,123925183,123930247	123895103,123924200,123925337,123930887	0.976415
adrenal_gland_male_adult_54_years	chr19	9700673	9700674	9700673	-	High_confidence	13	15	19	0.720483	3.419382	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.789474
adrenal_gland_male_adult_54_years	chr14	101120839	101120874	101120839	+	High_confidence	3	3	15	0.568803	3.521641	chr14	101120596	101120905	LTR|ERVL-MaLR|MLT1J2	-	chr14	101120855	101123542	LINC02285|ENST00000557121.1	+	101120855,101122888	101121144,101123542	0.800000
adrenal_gland_male_adult_54_years	chr11	128896441	128896465	128896441	+	RAMPAGE_only	18	18	56	2.123530	4.481200	chr11	128896213	128896607	LINE|L1|L1MD1	-	chr11	128891468	128916853	KCNJ5|ENST00000338350.4	+	128891468,128909851,128911263,128916408	128891721,128909940,128912210,128916853	1.000000
adrenal_gland_male_adult_54_years	chr12	10363964	10363965	10363964	+	High_confidence	15	15	20	0.758404	4.037401	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.650000
adrenal_gland_male_adult_54_years	chr6	11111829	11111838	11111829	-	High_confidence	3	3	11	0.417122	3.095795	chr6	11111706	11112217	LTR|ERV1|MER50	-	chr6	11102488	11111838	ERVFRD-1|NM_207582.2	-	11102488,11111676	11105630,11111838	1.000000
adrenal_gland_male_adult_54_years	chr3	114759158	114759187	114759186	-	High_confidence	4	4	11	0.417122	2.921928	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114338651	114759271	ZBTB20|ENST00000471418.5	-	114338651,114350273,114380216,114389004,114500351,114693527,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114759271	0.636364
adrenal_gland_male_adult_54_years	chr7	95506769	95506776	95506771	+	RAMPAGE_only	4	7	12	0.455042	3.084963	chr7	95506197	95507338	LINE|L1|HAL1	-	chr7	95503053	95540232	STRG.47443.4	+	95503053,95527812,95536436	95506834,95528303,95540232	0.750000
adrenal_gland_male_adult_54_years	chr4	141332616	141332617	141332616	-	High_confidence	219	220	259	9.821328	4.597949	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.945946
adrenal_gland_male_adult_54_years	chr3	194486599	194486632	194486631	-	High_confidence	3	3	10	0.379202	2.721928	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.700000
adrenal_gland_male_adult_54_years	chr4	4269605	4269614	4269609	-	High_confidence	15	16	46	1.744328	3.356967	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.978261
adrenal_gland_male_adult_54_years	chr1	179294641	179294642	179294641	+	High_confidence	5	6	7	0.265441	2.584963	chr1	179294538	179294832	SINE|Alu|AluSz	-	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.714286
adrenal_gland_male_adult_54_years	chr5	154409563	154409610	154409581	+	RAMPAGE_only	5	5	14	0.530883	2.699514	chr5	154409601	154409687	LINE|L1|L1PREC2	+	chr5	154403776	154419033	GALNT10|ENST00000517958.1	+	154403776,154409540,154412888,154415782,154416813	154404216,154409762,154413005,154415932,154419033	1.000000
adrenal_gland_male_adult_54_years	chr12	68963240	68963265	68963264	-	RAMPAGE_only	8	8	16	0.606723	3.006239	chr12	68963127	68963528	LTR|ERV1|MER39B	+	chr12	68957376	68957677	PRELID2P1|ENST00000552837.1	-	68957376	68957677	0.562500
adrenal_gland_male_adult_54_years	chr4	87499820	87499845	87499844	-	RAMPAGE_only	5	5	15	0.568803	3.807355	chr4	87499693	87499843	LINE|RTE-BovB|MamRTE1	-	chr4	87473417	87529092	SPARCL1|ENST00000503414.5	-	87473417,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87497130,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87497239,87499585,87529092	0.933333
adrenal_gland_male_adult_54_years	chr16	13940780	13940804	13940780	+	RAMPAGE_only	6	6	13	0.492962	3.418296	chr16	13940407	13940901	LTR|ERVL|MER77	-	chr16	13937763	13948004	ERCC4|ENST00000462862.1	+	13937763,13943973,13944722,13947613	13937858,13944095,13944835,13948004	0.692308
adrenal_gland_male_adult_54_years	chr12	119179268	119179314	119179296	+	High_confidence	6	6	14	0.530883	2.835238	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	1.000000
adrenal_gland_male_adult_54_years	chr8	17803594	17803608	17803607	+	RAMPAGE_only	14	14	38	1.440967	4.162573	chr8	17803546	17803836	SINE|Alu|AluSx1	+	chr8	17801344	17820625	STRG.50529.2	+	17801344,17808941,17809596,17820357	17803866,17809005,17809687,17820625	0.894737
adrenal_gland_male_adult_54_years	chr11	113246348	113246368	113246367	+	RAMPAGE_only	4	5	9	0.341282	2.750000	chr11	113246334	113246435	SINE|5S-Deu-L2|AmnSINE1	+	chr11	113233146	113275448	NCAM1|ENST00000528590.5	+	113233146,113235032,113236300,113240785,113246367,113255876,113260145,113270187,113271759,113275266	113233317,113235164,113236315,113240833,113246370,113256001,113260323,113270395,113271876,113275448	0.555556
adrenal_gland_male_adult_54_years	chr7	155952039	155952071	155952039	+	High_confidence	4	4	16	0.606723	3.625000	chr7	155951984	155952147	SINE|MIR|MIR3	-	chr7	155952048	155967203	STRG.49940.1	+	155952048,155964451	155952408,155967203	1.000000
adrenal_gland_male_adult_54_years	chr12	643627	643642	643635	-	High_confidence	16	17	59	2.237291	4.410875	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.983051
adrenal_gland_male_adult_54_years	chr11	86938472	86938473	86938472	-	RAMPAGE_only	4	4	7	0.265441	2.521641	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86892213	86922104	AP001528.2|ENST00000528660.1	-	86892213,86896412,86921235	86892372,86896540,86922104	1.000000
adrenal_gland_male_adult_54_years	chr2	231072213	231072255	231072254	+	RAMPAGE_only	9	9	27	1.023845	4.209867	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.962963
adrenal_gland_male_adult_54_years	chr1	174874418	174874439	174874418	+	High_confidence	28	28	84	3.185295	5.619390	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.630952
adrenal_gland_male_adult_54_years	chr9	14678065	14678076	14678075	-	RAMPAGE_only	7	8	19	0.720483	3.725481	chr9	14678056	14678165	LINE|L2|L2c	+	chr9	14611070	14693265	STRG.54943.2	-	14611070,14619638,14639895,14658748,14662214,14672829,14674186,14683570,14690336,14693228	14619098,14619682,14640012,14658887,14662326,14672928,14680162,14683729,14690385,14693265	0.894737
adrenal_gland_male_adult_54_years	chrY	12686557	12686590	12686589	+	RAMPAGE_only	4	5	11	0.417122	3.095795	chrY	12685409	12686624	LTR|ERV1|MER4-int	+	chrY	12701230	12860839	USP9Y|ENST00000338981.7	+	12701230,12708633,12709387,12720588,12722107,12725112,12726574,12735611,12735997,12736410,12738156,12739524,12757191,12758505,12760483,12771067,12773582,12775470,12776648,12778018,12778605,12779525,12786202,12786521,12790406,12791498,12793031,12810178,12810671,12811634,12812829,12816123,12818419,12833687,12837910,12839863,12841009,12842239,12843063,12846332,12846932,12847238,12856339,12856632,12857565,12859278	12702055,12708693,12709543,12720737,12722187,12725225,12726793,12735727,12736249,12736549,12738309,12739629,12757398,12758642,12760617,12771155,12773925,12775566,12776860,12778259,12778755,12779646,12786333,12786800,12790532,12791624,12793201,12810287,12810818,12811781,12813052,12816344,12818610,12833861,12838052,12840614,12841133,12842465,12843193,12846518,12847153,12847327,12856496,12856845,12857661,12860839	0.727273
adrenal_gland_male_adult_54_years	chr15	40264411	40264418	40264413	+	RAMPAGE_only	4	7	12	0.455042	3.027169	chr15	40264251	40264457	LINE|L1|L1M5	-	chr15	40253183	40277487	PAK6|ENST00000542403.3	+	40253183,40264780,40265841,40272223,40272865,40273345,40273550,40274141,40275926,40277115	40253289,40264989,40266495,40272721,40272999,40273472,40273676,40274276,40276105,40277487	0.916667
adrenal_gland_male_adult_54_years	chr8	142872615	142872795	142872769	-	RAMPAGE_only	17	18	153	5.801788	5.525998	chr8	142872730	142873092	LTR|ERVL-MaLR|MLT1A0	+	chr8	142872356	142875797	CYP11B1|ENST00000519285.5	-	142872356,142874956,142875233,142875711	142874486,142875154,142875381,142875797	0.908497
adrenal_gland_male_adult_54_years	chr14	94109670	94109699	94109678	+	RAMPAGE_only	3	4	14	0.530883	3.238901	chr14	94109433	94109807	LTR|ERV1|MER65B	-	chr14	94110732	94116698	IFI27|ENST00000616764.4	+	94110732,94110925,94111624,94114850,94115780,94116441	94110797,94110978,94111773,94114880,94115942,94116698	0.571429
adrenal_gland_male_adult_54_years	chr4	1241462	1241491	1241462	-	High_confidence	4	4	11	0.417122	3.459432	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1235752	1241463	CTBP1|ENST00000515690.1	-	1235752,1238182,1241324	1236316,1238337,1241463	0.727273
adrenal_gland_male_adult_54_years	chr19	571754	571792	571754	-	High_confidence	5	7	20	0.758404	3.784184	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	1.000000
adrenal_gland_male_adult_54_years	chr12	9065161	9065174	9065161	+	High_confidence	15	22	80	3.033615	5.092371	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9069861	STRG.69872.2	+	9065176	9069861	1.000000
adrenal_gland_male_adult_54_years	chr14	100829447	100829566	100829523	+	High_confidence	6	6	39	1.478887	4.609384	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.948718
adrenal_gland_male_adult_54_years	chr2	110118141	110118147	110118141	-	RAMPAGE_only	5	8	14	0.530883	3.182006	chr2	110117625	110118184	LINE|L1|L1MD2	-	chr2	110083869	110116566	MALL|NM_005434.4	-	110083869,110087571,110091602,110115687	110085757,110087697,110091770,110116566	0.785714
adrenal_gland_male_adult_54_years	chr9	123758077	123758104	123758103	-	High_confidence	10	11	61	2.313131	5.236237	chr9	123758093	123758254	SINE|MIR|MIRb	-	chr9	123569544	123757759	DENND1A|ENST00000474676.1	-	123569544,123583168,123609435,123630375,123652012,123667025,123671290,123757702	123569595,123583270,123609481,123630476,123652123,123667079,123671371,123757759	0.918033
adrenal_gland_male_adult_54_years	chr4	158167208	158167224	158167223	-	High_confidence	14	17	24	0.910084	4.175736	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158127544	158167212	FAM198B|ENST00000592586.1	-	158127544,158130785,158155610,158167176	158127614,158131012,158155825,158167212	0.666667
adrenal_gland_male_adult_54_years	chr17	4143196	4143215	4143199	+	High_confidence	380	385	918	34.810729	6.135083	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.974946
adrenal_gland_male_adult_54_years	chr11	65441801	65441991	65441801	+	RAMPAGE_only	9	9	108	4.095380	5.275133	chr11	65441504	65441864	LINE|L1|L1MB7	-	chr11	65423637	65445540	STRG.66558.14	+	65423637,65432397	65432372,65445540	1.000000
adrenal_gland_male_adult_54_years	chr8	143039246	143039285	143039266	+	High_confidence	28	30	100	3.792018	5.197391	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.670000
adrenal_gland_male_adult_54_years	chr15	52548722	52548829	52548722	-	RAMPAGE_only	8	8	77	2.919854	4.394407	chr15	52548654	52548753	DNA|TcMar-Tigger|Tigger7	+	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	0.974026
adrenal_gland_male_adult_54_years	chr1	226939240	226939248	226939240	+	RAMPAGE_only	3	4	7	0.265441	2.807355	chr1	226939237	226939309	DNA|hAT-Charlie|Charlie18a	-	chr1	226897535	226987545	COQ8A|ENST00000366779.5	+	226897535,226908521,226909701,226910588,226917526,226939407,226961376,226964999,226965670,226977448,226982026,226982677,226982893,226983551,226983760,226984093,226984547,226984875,226985253,226986452	226899555,226908683,226909794,226910757,226917660,226939591,226961562,226965410,226965737,226977523,226982149,226982763,226983034,226983633,226983854,226984235,226984655,226984941,226985340,226987545	0.714286
adrenal_gland_male_adult_54_years	chr12	118139313	118139332	118139331	+	High_confidence	7	7	15	0.568803	3.521641	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.866667
adrenal_gland_male_adult_54_years	chr8	144106368	144106379	144106368	+	High_confidence	2	2	7	0.265441	2.521641	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.714286
adrenal_gland_male_adult_54_years	chr12	113374554	113374566	113374565	+	RAMPAGE_only	2	2	7	0.265441	2.584963	chr12	113374588	113374752	SINE|MIR|MIR3	+	chr12	113358569	113391625	PLBD2|ENST00000280800.4	+	113358569,113369115,113372648,113374473,113374792,113380744,113384104,113384850,113385211,113386936,113387743,113388458	113358890,113369209,113372807,113374574,113375007,113380842,113384265,113384946,113385283,113387089,113387906,113391625	0.857143
adrenal_gland_male_adult_54_years	chr14	100831450	100831468	100831450	+	High_confidence	2	2	7	0.265441	2.521641	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100831480	100836223	STRG.80975.21	+	100831480,100834631,100836166	100832641,100835879,100836223	0.571429
adrenal_gland_male_adult_54_years	chrY	4036475	4036535	4036531	+	High_confidence	6	6	50	1.896009	4.768099	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	0.860000
adrenal_gland_male_adult_54_years	chr12	27579302	27579334	27579302	+	RAMPAGE_only	3	3	9	0.341282	2.725481	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.666667
adrenal_gland_male_adult_54_years	chr3	101466852	101466901	101466874	-	RAMPAGE_only	5	6	23	0.872164	3.914866	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.956522
adrenal_gland_male_adult_54_years	chr19	39390068	39390092	39390079	-	RAMPAGE_only	3	3	9	0.341282	2.750000	chr19	39389937	39390046	LINE|L2|L2a	-	chr19	39389293	39391082	PAF1|ENST00000595797.5	-	39389293,39389479,39390068,39390259,39390817	39389383,39389761,39390161,39390289,39391082	0.555556
adrenal_gland_male_adult_54_years	chr9	15461276	15461285	15461281	+	RAMPAGE_only	2	2	8	0.303361	2.750000	chr9	15461171	15461460	SINE|Alu|AluJb	-	chr9	15447111	15471044	STRG.55018.3	+	15447111,15451319,15453040,15457959	15447244,15451402,15453205,15471044	1.000000
adrenal_gland_male_adult_54_years	chr1	147172975	147172997	147172975	+	High_confidence	11	18	28	1.061765	3.797903	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147295762	STRG.5370.2	+	147172770,147252622,147254869,147255812,147256530,147259836,147264421,147265931,147267425,147268781,147270931,147272170,147275353,147276103,147280025,147284350,147285323,147286297,147287634,147291481,147293607,147294408,147295430	147174585,147252735,147254976,147255927,147256562,147259918,147264584,147266087,147267518,147268878,147271005,147272281,147275468,147276257,147280191,147284499,147285487,147286500,147287733,147291552,147293722,147294517,147295762	0.964286
adrenal_gland_male_adult_54_years	chr14	81192654	81192655	81192654	-	RAMPAGE_only	7	7	7	0.265441	2.807355	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	1.000000
adrenal_gland_male_adult_54_years	chr3	129256114	129256146	129256145	+	RAMPAGE_only	4	4	10	0.379202	3.121928	chr3	129256170	129256401	DNA|hAT|MamRep38	+	chr3	129260226	129265675	COPG1|ENST00000504547.1	+	129260226,129260618,129263903,129265548	129260400,129260807,129263999,129265675	0.500000
adrenal_gland_male_adult_54_years	chr19	20611504	20611523	20611504	+	High_confidence	202	207	463	17.557045	4.937019	chr19	20611050	20611625	LTR|ERV1|LTR61	+	chr19	20611558	20615389	AC010636.1|ENST00000598116.1	+	20611558,20615058	20611855,20615389	0.855292
adrenal_gland_male_adult_54_years	chr1	85379939	85379974	85379973	-	RAMPAGE_only	4	4	11	0.417122	2.921928	chr1	85379701	85380025	LINE|L2|L2	+	chr1	85318484	85465140	DDAH1|ENST00000284031.12	-	85318484,85324739,85350414,85351505,85358747,85464742	85321568,85324883,85350534,85351579,85358847,85465140	0.636364
adrenal_gland_male_adult_54_years	chr17	42136457	42136480	42136479	-	High_confidence	4	5	8	0.303361	2.750000	chr17	42136440	42136680	SINE|MIR|MIRb	+	chr17	42128329	42136431	RAB5C|ENST00000552162.5	-	42128329,42128648,42130336,42136340	42128383,42128800,42130590,42136431	1.000000
adrenal_gland_male_adult_54_years	chr10	114698826	114698849	114698843	-	RAMPAGE_only	11	12	23	0.872164	3.845351	chr10	114698749	114699028	LINE|L1|HAL1	+	chr10	114435953	114685003	ABLIM1|ENST00000369256.6	-	114435953,114437843,114439175,114440081,114441016,114441721,114444028,114445311,114447879,114451623,114453378,114465697,114468180,114472976,114473878,114485296,114487957,114491790,114545004,114547649,114571296,114575415,114601826,114684289	114436373,114437924,114439250,114440089,114441077,114441786,114444134,114445403,114448026,114451671,114453483,114465827,114468216,114473132,114473956,114485380,114488016,114491878,114545098,114547776,114571406,114575599,114601961,114685003	0.565217
adrenal_gland_male_adult_54_years	chr20	37297344	37297345	37297344	+	High_confidence	9	9	9	0.341282	2.725481	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
adrenal_gland_male_adult_54_years	chr6	77369117	77369167	77369166	-	High_confidence	20	25	117	4.436662	5.853280	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77273025	77369174	STRG.40547.3	-	77273025,77350621,77368885	77273307,77350734,77369174	0.863248
adrenal_gland_male_adult_54_years	chrX	38612577	38612598	38612577	+	RAMPAGE_only	4	4	16	0.606723	3.625000	chrX	38612500	38614189	LINE|L1|HAL1	-	chrX	38570682	38675816	TSPAN7|ENST00000488893.5	+	38570682,38666120,38671375,38674220,38675704	38570946,38666309,38671450,38674316,38675816	0.750000
adrenal_gland_male_adult_54_years	chr18	80148048	80148049	80148048	+	High_confidence	13	13	14	0.530883	2.931209	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.928571
adrenal_gland_male_adult_54_years	chr3	53495035	53495054	53495035	+	High_confidence	1	1	7	0.265441	2.584963	chr3	53495032	53495170	LINE|L2|L2a	+	chr3	53495048	53812465	CACNA1D|NM_000720.3	+	53495048,53497151,53501614,53650778,53660132,53665659,53666338,53673712,53702640,53718300,53718681,53719754,53722313,53723433,53723791,53726878,53730441,53731076,53732015,53732814,53735373,53740279,53743010,53744739,53745623,53745822,53747301,53749267,53751748,53753571,53761997,53769972,53770423,53772832,53774586,53775885,53776602,53776859,53780025,53781565,53786821,53800248,53801057,53802146,53803422,53804982,53808648,53809977,53811112	53495233,53497461,53501720,53650918,53660275,53665812,53666535,53673816,53702810,53718388,53718741,53719781,53722474,53723659,53723999,53726999,53730556,53731146,53732082,53732962,53735503,53740339,53743117,53744827,53745731,53745875,53747448,53749469,53751907,53753682,53762081,53770017,53770552,53772898,53774678,53776045,53776730,53776956,53780128,53781667,53786952,53800365,53801425,53802173,53803572,53805146,53808770,53810298,53812465	0.857143
adrenal_gland_male_adult_54_years	chr11	108330408	108330417	108330416	+	RAMPAGE_only	3	3	12	0.455042	3.027169	chr11	108330466	108330549	LINE|L2|L2c	+	chr11	108296973	108333908	ATM|ENST00000533690.5	+	108296973,108299713,108301647,108302852,108304674,108307896,108310159,108312410,108315822,108316010,108317372,108319953,108321300,108325309,108326057,108327644,108329020,108330213,108331443,108331878,108332761,108333885	108297382,108299885,108301789,108303029,108304852,108307984,108310315,108312498,108315911,108316113,108317521,108320058,108321420,108325544,108326225,108327758,108329238,108330421,108331557,108332037,108332900,108333908	0.666667
adrenal_gland_male_adult_54_years	chr2	54618386	54618414	54618411	+	RAMPAGE_only	9	11	30	1.137606	4.306257	chr2	54618332	54618503	LINE|L2|L2c	-	chr2	54558393	54662308	SPTBN1|NM_178313.2	+	54558393,54599091,54612160,54616206,54617607,54618077,54621399,54622299,54623478,54624803,54625931,54628096,54628932,54629891,54630854,54632565,54637712,54642982,54644322,54645228,54645927,54646193,54647130,54648985,54649614,54653608,54655069,54655913,54657849,54659153,54659935	54558887,54599243,54612334,54616298,54617688,54618193,54621512,54622487,54623596,54624962,54626234,54628250,54629803,54630029,54631611,54632768,54637803,54643129,54644586,54645453,54646017,54646475,54647261,54649190,54649989,54653853,54655208,54655998,54658046,54659266,54662308	0.866667
adrenal_gland_male_adult_54_years	chr2	71417037	71417058	71417037	+	RAMPAGE_only	1	1	7	0.265441	2.584963	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.714286
adrenal_gland_male_adult_54_years	chr9	134373102	134373106	134373102	+	High_confidence	10	13	30	1.137606	4.066109	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134372851	134440585	STRG.58884.2	+	134372851,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134374130,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440585	0.933333
adrenal_gland_male_adult_54_years	chr4	39627120	39627121	39627120	-	High_confidence	16	16	16	0.606723	3.280639	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.937500
adrenal_gland_male_adult_54_years	chr19	10555127	10555148	10555127	-	RAMPAGE_only	3	5	10	0.379202	2.947703	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	0.900000
adrenal_gland_male_adult_54_years	chr19	9140390	9140428	9140393	+	High_confidence	64	64	264	10.010929	6.301771	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	STRG.93735.3	+	9140396,9155924,9156611,9157979,9158825,9160113	9140592,9156041,9157394,9158075,9158908,9163408	0.859848
adrenal_gland_male_adult_54_years	chr4	38744114	38744135	38744114	+	RAMPAGE_only	48	53	118	4.474582	5.870593	chr4	38743635	38744259	LINE|L1|HAL1	+	chr4	38748193	38754389	STRG.26515.1	+	38748193,38750593,38751431	38748790,38750739,38754389	0.508475
adrenal_gland_male_adult_54_years	chr9	92720691	92720702	92720691	-	RAMPAGE_only	3	3	8	0.303361	2.521641	chr9	92720689	92720791	DNA|TcMar-Tigger|Tigger19b	-	chr9	92711362	92764801	BICD2|NM_001003800.1	-	92711362,92717796,92718538,92720299,92722655,92729023,92764504	92715463,92717948,92719582,92720755,92722808,92729236,92764801	0.875000
adrenal_gland_male_adult_54_years	chr9	128684476	128684493	128684484	-	High_confidence	4	5	22	0.834244	4.106603	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683042	128684470	STRG.58746.1	-	128683042	128684470	0.590909
adrenal_gland_male_adult_54_years	chr14	67396723	67396724	67396723	-	RAMPAGE_only	7	7	10	0.379202	2.921928	chr14	67396493	67396938	LINE|L2|L2a	+	chr14	67386978	67412200	PLEK2|NM_016445.2	-	67386978,67388223,67390662,67392325,67392661,67393149,67395401,67397661,67412017	67387456,67388302,67390746,67392427,67392849,67393241,67395583,67397826,67412200	0.600000
adrenal_gland_male_adult_54_years	chr4	75047346	75047536	75047499	+	RAMPAGE_only	47	47	393	14.902632	5.269717	chr4	75047494	75047704	DNA|hAT-Charlie|MER20	+	chr4	74933115	75050113	PARM1|ENST00000307428.7	+	74933115,75012424,75033882,75046162	74933370,75013150,75033961,75050113	1.000000
adrenal_gland_male_adult_54_years	chr15	40389187	40389197	40389196	+	RAMPAGE_only	10	11	26	0.985925	4.623517	chr15	40389143	40389448	SINE|Alu|AluSp	-	chr15	40383254	40392023	KNSTRN|ENST00000559083.1	+	40383254,40389505,40389835,40391492,40391948	40383322,40389611,40389929,40391554,40392023	0.846154
adrenal_gland_male_adult_54_years	chr10	92928419	92928420	92928419	+	High_confidence	8	10	11	0.417122	2.550341	chr10	92928456	92928528	LINE|L2|L2a	+	chr10	92928373	93058524	EXOC6|ENST00000495132.5	+	92928373,92934143,92934309,92935813,92940726,92948273,92952272,92954629,92955579,92974052,92997473,92999249,93014193,93056923,93058222	92928422,92934190,92934430,92935885,92940824,92948379,92952382,92954741,92955714,92974232,92997615,92999387,93014267,93057036,93058524	0.909091
adrenal_gland_male_adult_54_years	chr10	72220360	72220369	72220368	+	RAMPAGE_only	3	3	8	0.303361	2.521641	chr10	72220369	72220666	SINE|Alu|AluJo	+	chr10	72223132	72233829	ANAPC16|ENST00000470481.2	+	72223132,72230365,72233000	72224056,72230440,72233829	0.875000
adrenal_gland_male_adult_54_years	chr20	23386680	23386699	23386698	-	RAMPAGE_only	11	11	25	0.948005	4.103465	chr20	23386573	23386920	LTR|ERVL|MER77	+	chr20	23374521	23421488	NAPB|ENST00000377026.4	-	23374521,23379444,23379866,23381212,23389945,23390208,23394921,23395138,23397071,23402992,23421304	23377486,23379495,23379935,23381317,23390030,23390264,23394999,23395185,23397188,23403072,23421488	0.960000
adrenal_gland_male_adult_54_years	chr5	997307	997319	997318	-	High_confidence	5	5	13	0.492962	3.238901	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	1.000000
adrenal_gland_male_adult_54_years	chr11	57794056	57794070	57794069	+	RAMPAGE_only	6	6	10	0.379202	2.921928	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	1.000000
adrenal_gland_male_adult_54_years	chr19	51350329	51350369	51350368	-	RAMPAGE_only	7	7	17	0.644643	3.024397	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.941176
adrenal_gland_male_adult_54_years	chr16	84139251	84139279	84139251	-	RAMPAGE_only	4	6	16	0.606723	3.506891	chr16	84139153	84139637	LTR|ERVL-MaLR|MLT1D	+	chr16	84130318	84144438	HSDL1|ENST00000568857.5	-	84130318,84131101,84135543,84144290	84130431,84131327,84135605,84144438	0.625000
adrenal_gland_male_adult_54_years	chr7	55538661	55538667	55538661	-	High_confidence	5	6	13	0.492962	2.688722	chr7	55538614	55538881	LINE|L1|L1ME4b	+	chr7	55471967	55538660	VOPP1|ENST00000625836.2	-	55471967,55492281,55497612,55521071,55538612	55473045,55492418,55497690,55521130,55538660	0.923077
adrenal_gland_male_adult_54_years	chr15	34988767	34988792	34988767	-	High_confidence	4	5	10	0.379202	2.646439	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	1.000000
adrenal_gland_male_adult_54_years	chr1	154975524	154975552	154975524	+	High_confidence	5	5	24	0.910084	3.642490	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.750000
adrenal_gland_male_adult_54_years	chr2	182030756	182030794	182030756	+	High_confidence	4	4	20	0.758404	3.821928	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.950000
adrenal_gland_male_adult_54_years	chr12	26832778	26832827	26832779	-	High_confidence	13	16	34	1.289286	4.351410	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.794118
adrenal_gland_male_adult_54_years	chr15	85330237	85330251	85330237	-	RAMPAGE_only	6	7	11	0.417122	2.921928	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.727273
adrenal_gland_male_adult_54_years	chr14	32075811	32075822	32075821	+	High_confidence	6	6	11	0.417122	3.095795	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076113	32090780	ARHGAP5|ENST00000555814.1	+	32076113,32076457,32090501	32076217,32076657,32090780	0.545455
adrenal_gland_male_adult_54_years	chr6	169654701	169654724	169654701	-	RAMPAGE_only	5	5	17	0.644643	3.625000	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169457211	169649233	WDR27|ENST00000479310.5	-	169457211,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197	169457634,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649233	0.823529
adrenal_gland_male_adult_54_years	chr17	7013027	7013031	7013027	+	High_confidence	5	5	9	0.341282	2.500000	chr17	7012918	7013141	SINE|Alu|AluSx	+	chr17	7013230	7014520	RNASEK|ENST00000552321.2	+	7013230,7013665,7014144	7013516,7013742,7014520	0.888889
adrenal_gland_male_adult_54_years	chr18	12653062	12653085	12653080	-	High_confidence	3	3	13	0.492962	3.392747	chr18	12653065	12653265	DNA|hAT-Charlie|MER20	+	chr18	12506495	12653085	SPIRE1|ENST00000449797.5	-	12506495,12512453,12535475,12546673,12635061,12653000	12506641,12512531,12535601,12546904,12635096,12653085	0.846154
adrenal_gland_male_adult_54_years	chr11	17282798	17282822	17282821	+	RAMPAGE_only	3	3	11	0.417122	3.095795	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.818182
adrenal_gland_male_adult_54_years	chr9	77822994	77823008	77822997	-	RAMPAGE_only	89	93	329	12.475741	6.532527	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77716273	78031449	GNAQ|NM_002072.4	-	77716273,77728513,77794462,77797519,77815615,77922160,78031099	77721513,77728667,77794592,77797648,77815770,77922345,78031449	0.963526
adrenal_gland_male_adult_54_years	chr19	44914313	44914323	44914321	+	High_confidence	213	265	391	14.826792	5.841505	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.795396
adrenal_gland_male_adult_54_years	chr2	200857727	200857747	200857746	-	High_confidence	2	3	8	0.303361	2.521641	chr2	200857615	200857696	LINE|L1|L1MA8	-	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.875000
adrenal_gland_male_adult_54_years	chr5	31551429	31551430	31551429	+	RAMPAGE_only	6	7	8	0.303361	2.750000	chr5	31551437	31551891	LTR|ERVL-MaLR|MLT1D	+	chr5	31545670	31554839	C5orf22|ENST00000504866.1	+	31545670,31548489,31551292,31552772	31545712,31548687,31551432,31554839	1.000000
adrenal_gland_male_adult_54_years	chr15	92678221	92678246	92678221	-	RAMPAGE_only	2	2	8	0.303361	3.000000	chr15	92678051	92678466	LTR|ERVL-MaLR|MSTC	-	chr15	92619182	92668043	FAM174B|ENST00000557480.5	-	92619182,92630213,92667897	92619459,92630345,92668043	0.500000
adrenal_gland_male_adult_54_years	chr5	42837767	42837774	42837773	-	RAMPAGE_only	14	15	27	1.023845	4.103465	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.777778
adrenal_gland_male_adult_54_years	chr11	110248039	110248042	110248039	-	RAMPAGE_only	3	3	8	0.303361	2.521641	chr11	110247890	110248238	LINE|L1|L1PB2	+	chr11	110195589	110296504	RDX|ENST00000646663.1	-	110195589,110199580,110200277,110231872,110233236,110236098,110237491,110247702,110253945,110255288,110257766,110258105,110263959,110264778,110272535,110279680,110296466	110196165,110199678,110200386,110232033,110233479,110236191,110237652,110247833,110254109,110255385,110257913,110258189,110264234,110264874,110272619,110279756,110296504	0.875000
adrenal_gland_male_adult_54_years	chr7	99410112	99410113	99410112	+	High_confidence	8	8	12	0.455042	3.277613	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.916667
adrenal_gland_male_adult_54_years	chr22	36481305	36481346	36481305	-	High_confidence	9	9	43	1.630568	4.234480	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.697674
adrenal_gland_male_adult_54_years	chr13	52570267	52570324	52570323	+	RAMPAGE_only	8	9	24	0.910084	3.708132	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.583333
adrenal_gland_male_adult_54_years	chr9	121313981	121314021	121314020	+	RAMPAGE_only	74	76	225	8.532041	5.398675	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
adrenal_gland_male_adult_54_years	chr12	122218272	122218296	122218272	-	High_confidence	4	4	11	0.417122	3.277613	chr12	122218031	122218232	DNA|hAT-Charlie|MER58A	-	chr12	122208315	122218289	DIABLO|ENST00000439489.6	-	122208315,122209696,122216487,122216758,122218265	122208577,122209858,122216584,122216869,122218289	0.727273
adrenal_gland_male_adult_54_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	31	34	79	2.995695	4.027543	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.949367
adrenal_gland_male_adult_54_years	chrX	147937502	147937584	147937502	+	RAMPAGE_only	3	5	33	1.251366	4.187889	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147951112	STRG.106023.6	+	147940580,147943130,147944904,147945533,147948682	147940662,147943326,147945051,147945616,147951112	1.000000
adrenal_gland_male_adult_54_years	chr13	98988460	98988461	98988460	-	RAMPAGE_only	52	53	55	2.085610	4.231086	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98793486	98978084	DOCK9|NM_001130048.1	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,98977783	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,98978084	0.872727
adrenal_gland_male_adult_54_years	chr8	53523890	53523891	53523890	-	High_confidence	7	7	8	0.303361	2.807355	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.750000
adrenal_gland_male_adult_54_years	chr13	93455157	93455185	93455182	+	RAMPAGE_only	3	3	14	0.530883	3.093069	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93507675	93830487	STRG.76683.2	+	93507675,93545262,93830153	93507747,93545421,93830487	1.000000
adrenal_gland_male_adult_54_years	chr18	42027530	42027539	42027530	+	RAMPAGE_only	8	8	19	0.720483	3.392147	chr18	42027565	42027649	DNA|hAT-Charlie|MER58B	+	chr18	42025781	42037817	PIK3C3|ENST00000590013.2	+	42025781,42027442,42029324,42033825,42037691	42025939,42027548,42029441,42033957,42037817	0.842105
adrenal_gland_male_adult_54_years	chr9	20658312	20658349	20658312	+	High_confidence	35	35	191	7.242755	5.795020	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.774869
adrenal_gland_male_adult_54_years	chr12	6787003	6787004	6787003	+	High_confidence	6	6	6	0.227521	2.584963	chr12	6786967	6787079	DNA|hAT-Charlie|MER102c	-	chr12	6786857	6800445	CD4|ENST00000535707.5	+	6786857,6789488,6800071,6800306	6787005,6789662,6800187,6800445	0.666667
adrenal_gland_male_adult_54_years	chr1	111192179	111192190	111192179	-	RAMPAGE_only	2	2	6	0.227521	2.584963	chr1	111191905	111192139	SINE|MIR|MIRb	-	chr1	111187173	111189328	DENND2D|ENST00000468692.1	-	111187173,111188130,111188701,111189211	111187681,111188370,111188786,111189328	1.000000
adrenal_gland_male_adult_54_years	chr5	147382883	147382900	147382883	+	High_confidence	11	11	39	1.478887	3.922706	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.717949
adrenal_gland_male_adult_54_years	chr10	133369963	133370017	133370016	-	RAMPAGE_only	10	11	24	0.910084	4.175736	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.958333
adrenal_gland_male_adult_54_years	chr1	20028387	20028408	20028407	+	High_confidence	9	15	24	0.910084	3.879664	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028429	20091158	PLA2G5|ENST00000465698.5	+	20028429,20059631,20068872,20084820,20086082,20088824,20089788,20090567	20028709,20059692,20069032,20084870,20086227,20088943,20089895,20091158	0.875000
adrenal_gland_male_adult_54_years	chr17	4736361	4736404	4736361	-	High_confidence	10	14	48	1.820169	3.151902	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	1.000000
adrenal_gland_male_adult_54_years	chr3	33838239	33838261	33838239	+	RAMPAGE_only	8	8	31	1.175526	4.306891	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.806452
adrenal_gland_male_adult_54_years	chr14	57274826	57274843	57274833	+	RAMPAGE_only	5	6	16	0.606723	3.750000	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.937500
adrenal_gland_male_adult_54_years	chr15	75347042	75347082	75347042	+	High_confidence	4	4	17	0.644643	3.969816	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347052	75349170	NEIL1|ENST00000568059.1	+	75347052,75347246,75348883	75347110,75347473,75349170	0.529412
adrenal_gland_male_adult_54_years	chr5	42993225	42993261	42993225	-	High_confidence	5	6	19	0.720483	3.836592	chr5	42992907	42993217	SINE|Alu|AluSz	-	chr5	42990836	42993327	STRG.32811.1	-	42990836	42993327	0.894737
adrenal_gland_male_adult_54_years	chr19	51795244	51795287	51795244	+	High_confidence	5	6	26	0.985925	4.373661	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.961538
adrenal_gland_male_adult_54_years	chr11	64242499	64242547	64242546	+	High_confidence	19	20	75	2.844014	5.153763	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
adrenal_gland_male_adult_54_years	chr2	85890210	85890247	85890232	+	RAMPAGE_only	2	3	9	0.341282	2.750000	chr2	85890028	85890278	SINE|Alu|AluSx	+	chr2	85889116	85904727	STRG.12985.1	+	85889116,85903871	85891297,85904727	0.777778
adrenal_gland_male_adult_54_years	chr2	86826129	86826130	86826129	-	RAMPAGE_only	6	6	8	0.303361	2.750000	chr2	86826118	86826191	SINE|MIR|MIR1_Amn	+	chr2	86815346	86861915	CD8B|ENST00000393759.6	-	86815346,86822320,86844921,86846683,86852996,86858056,86861822	86815718,86822374,86844958,86846773,86853086,86858416,86861915	1.000000
adrenal_gland_male_adult_54_years	chr15	41280692	41280702	41280695	+	RAMPAGE_only	5	8	21	0.796324	3.272804	chr15	41280505	41280810	SINE|Alu|AluSx3	-	chr15	41231238	41281887	CHP1|NM_007236.4	+	41231238,41243666,41256909,41262755,41270556,41278766,41279335	41231449,41243739,41256990,41262883,41270618,41278889,41281887	0.952381
adrenal_gland_male_adult_54_years	chr19	52215825	52215848	52215825	+	RAMPAGE_only	2	2	8	0.303361	2.521641	chr19	52215807	52215838	LINE|L2|L2b	-	chr19	52201092	52226417	PPP2R1A|ENST00000462990.5	+	52201092,52201943,52205962,52211259,52212685,52212954,52215778,52216003,52216528,52219690,52220188,52220978,52222098,52225716,52225964	52201694,52202034,52206063,52211492,52212833,52213110,52215893,52216074,52216663,52219864,52220249,52221133,52222241,52225808,52226417	0.875000
adrenal_gland_male_adult_54_years	chr12	104280736	104280809	104280781	-	High_confidence	14	18	65	2.464812	5.360529	chr12	104280524	104280952	LTR|ERVL|MLT2D	+	chr12	104262313	104280722	AC089983.1|ENST00000549807.1	-	104262313,104280283	104262575,104280722	0.738462
adrenal_gland_male_adult_54_years	chr12	2798734	2798810	2798793	+	RAMPAGE_only	2	3	16	0.606723	3.875000	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2794952	2805423	FKBP4|ENST00000001008.5	+	2794952,2797137,2797728,2798705,2799087,2799849,2800038,2800391,2801116,2803150	2795244,2797282,2797871,2798826,2799244,2799940,2800122,2800577,2801356,2805423	0.937500
adrenal_gland_male_adult_54_years	chr1	54200557	54200588	54200557	+	High_confidence	4	4	28	1.061765	4.021641	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.607143
adrenal_gland_male_adult_54_years	chr12	26914550	26914579	26914550	-	RAMPAGE_only	6	7	14	0.530883	3.235926	chr12	26914520	26914587	LINE|RTE-BovB|MamRTE1	+	chr12	26905180	26917734	INTS13|ENST00000538155.5	-	26905180,26906301,26911177,26913456,26913973,26916001,26917351,26917643	26905536,26906437,26911317,26913687,26914128,26916180,26917441,26917734	1.000000
adrenal_gland_male_adult_54_years	chr6	109325708	109325753	109325708	+	RAMPAGE_only	3	3	15	0.568803	3.106891	chr6	109324446	109326053	LINE|L2|L2a	-	chr6	109294308	109355046	CCDC162P|ENST00000638844.1	+	109294308,109295526,109300230,109305958,109307981,109309501,109314062,109315279,109316847,109329002,109336367,109337395,109338447,109340901,109341301,109342398,109343986,109348426,109352786,109354847	109294458,109295692,109300369,109306112,109308077,109309654,109314292,109315418,109316968,109329112,109336517,109337449,109338615,109341054,109341433,109342551,109344196,109348547,109352914,109355046	0.800000
adrenal_gland_male_adult_54_years	chr11	111097312	111097380	111097319	-	High_confidence	5	5	49	1.858089	4.127066	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.938776
adrenal_gland_male_adult_54_years	chr11	65434368	65434703	65434702	+	RAMPAGE_only	10	11	211	8.001159	6.157497	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65423637	65445540	STRG.66558.14	+	65423637,65432397	65432372,65445540	0.985782
adrenal_gland_male_adult_54_years	chr16	81181322	81181340	81181330	-	High_confidence	9	9	16	0.606723	3.640224	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.937500
adrenal_gland_male_adult_54_years	chr12	79873266	79873267	79873266	-	High_confidence	8	8	10	0.379202	2.725481	chr12	79873243	79873519	DNA|hAT-Charlie|Charlie1a	+	chr12	79828370	79872872	PPP1R12A|ENST00000548318.1	-	79828370,79832331,79845301,79848787,79872807	79828464,79832491,79845420,79848931,79872872	0.900000
adrenal_gland_male_adult_54_years	chr9	20658568	20658608	20658607	+	High_confidence	8	14	31	1.175526	4.582119	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658335	20770112	STRG.55169.4	+	20658335,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.903226
adrenal_gland_male_adult_54_years	chr2	228483000	228483020	228483000	-	RAMPAGE_only	4	4	10	0.379202	2.641604	chr2	228481167	228483258	LINE|L1|L1PA3	-	chr2	228481181	228611395	STRG.18128.3	-	228481181,228488682,228611251	228483498,228488793,228611395	0.800000
adrenal_gland_male_adult_54_years	chr19	54617128	54617148	54617130	+	High_confidence	6	11	29	1.099685	4.418157	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.793103
adrenal_gland_male_adult_54_years	chr12	7890750	7890787	7890750	+	High_confidence	3	3	11	0.417122	2.646439	chr12	7890747	7890813	LINE|CR1|L3	+	chr12	7890800	7900140	NANOGP1|ENST00000607111.2	+	7890800,7892580,7895476,7898264,7898534,7899483	7890850,7892726,7895739,7898351,7899313,7900140	0.727273
adrenal_gland_male_adult_54_years	chr1	179856134	179856147	179856146	-	RAMPAGE_only	2	3	7	0.265441	2.584963	chr1	179855896	179856189	SINE|Alu|AluSz	+	chr1	179840086	179877772	STRG.6809.1	-	179840086,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877772	0.857143
adrenal_gland_male_adult_54_years	chr16	87381459	87381509	87381508	-	RAMPAGE_only	16	16	32	1.213446	4.481728	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87326986	87383757	FBXO31|ENST00000311635.11	-	87326986,87333885,87335303,87336154,87342876,87343597,87347173,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87360366,87383757	0.562500
adrenal_gland_male_adult_54_years	chr6	26474342	26474346	26474345	+	High_confidence	5	5	9	0.341282	2.725481	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26474351	26476606	STRG.38579.1	+	26474351,26476160	26474396,26476606	0.666667
adrenal_gland_male_adult_54_years	chr13	110179297	110179344	110179297	-	RAMPAGE_only	11	11	47	1.782249	4.683752	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	0.957447
adrenal_gland_male_adult_54_years	chr6	2881285	2881286	2881285	-	High_confidence	63	65	65	2.464812	5.453160	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.969231
adrenal_gland_male_adult_54_years	chr1	151195091	151195106	151195105	-	RAMPAGE_only	6	6	15	0.568803	3.378783	chr1	151194900	151195210	SINE|Alu|AluSc8	+	chr1	151176299	151190213	VPS72|NM_001271087.1	-	151176299,151178000,151184316,151185505,151185797,151190004	151177064,151178145,151184493,151185620,151185950,151190213	0.600000
adrenal_gland_male_adult_54_years	chr12	118139096	118139097	118139096	+	High_confidence	33	33	33	1.251366	4.597276	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.818182
adrenal_gland_male_adult_54_years	chr15	75626279	75626305	75626304	-	High_confidence	7	8	23	0.872164	3.675311	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
adrenal_gland_male_adult_54_years	chr1	89272783	89272860	89272856	-	High_confidence	214	355	1841	69.811059	6.435255	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.967952
adrenal_gland_male_adult_54_years	chr4	185620089	185620144	185620093	-	RAMPAGE_only	3	7	29	1.099685	3.525940	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.931034
adrenal_gland_male_adult_54_years	chr16	4355592	4355593	4355592	-	High_confidence	143	147	147	5.574267	5.127476	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.925170
adrenal_gland_male_adult_54_years	chr9	113392137	113392149	113392148	-	RAMPAGE_only	14	14	22	0.834244	3.921928	chr9	113391831	113392103	LINE|CR1|L3	-	chr9	113386311	113401120	ALAD|NM_001317745.1	-	113386311,113388976,113389437,113389598,113389772,113390404,113390592,113390797,113391526,113393446,113400933	113388361,113389106,113389524,113389686,113389828,113390493,113390676,113390933,113391623,113393634,113401120	0.909091
adrenal_gland_male_adult_54_years	chr12	42098225	42098284	42098283	-	RAMPAGE_only	13	13	63	2.388972	4.886764	chr12	42098282	42098429	SINE|MIR|MIR	+	chr12	42087144	42144712	GXYLT1|ENST00000280876.6	-	42087144,42097441,42097909,42105817,42109565,42118999,42144425	42087947,42097614,42098033,42106069,42109691,42119171,42144712	0.984127
adrenal_gland_male_adult_54_years	chr3	28347630	28347667	28347653	-	High_confidence	7	7	20	0.758404	4.021928	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.600000
adrenal_gland_male_adult_54_years	chr13	30376929	30376954	30376953	-	High_confidence	3	3	10	0.379202	2.947703	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30357741	30377145	LINC00426|ENST00000420219.5	-	30357741,30358253,30363160,30372284,30375466,30376826	30357889,30358376,30363226,30372374,30375776,30377145	0.500000
adrenal_gland_male_adult_54_years	chr11	73272240	73272248	73272240	+	High_confidence	8	9	17	0.644643	2.933955	chr11	73272218	73272327	SINE|MIR|MIRc	+	chr11	73272201	73298617	P2RY6|ENST00000393590.2	+	73272201,73296484	73272466,73298617	0.941176
adrenal_gland_male_adult_54_years	chr7	37353636	37353651	37353636	-	High_confidence	16	16	37	1.403047	4.516876	chr7	37353223	37353900	LTR|ERV1|LTR12_	-	chr7	36852905	37353668	ELMO1|NM_001206482.1	-	36852905,36861658,36870392,36878009,36887559,36894853,37013298,37096618,37133129,37211385,37213334,37216644,37222614,37224878,37233094,37244355,37259180,37271831,37314849,37315919,37342612,37353031	36855751,36861736,36870475,36878117,36887672,36895017,37013435,37096727,37133234,37211517,37213457,37216695,37222693,37225030,37233194,37244391,37259350,37271882,37314922,37315960,37342763,37353668	0.891892
adrenal_gland_male_adult_54_years	chr4	54264923	54265036	54265035	+	RAMPAGE_only	11	13	98	3.716178	4.079062	chr4	54265070	54265216	SINE|MIR|MIR3	+	chr4	54229310	54281978	PDGFRA|ENST00000509490.5	+	54229310,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54278818,54280315,54281580	54229415,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54278971,54280482,54281978	1.000000
adrenal_gland_male_adult_54_years	chr18	50400902	50400903	50400902	+	High_confidence	29	29	33	1.251366	3.910179	chr18	50400450	50401006	LTR|ERV1|LTR6A	+	chr18	50400861	50408414	STRG.92706.1	+	50400861,50405174	50401215,50408414	0.939394
adrenal_gland_male_adult_54_years	chr1	147173173	147173261	147173225	+	High_confidence	25	34	166	6.294751	6.320023	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.807229
adrenal_gland_male_adult_54_years	chr2	200656127	200656136	200656135	+	RAMPAGE_only	5	5	14	0.530883	3.378783	chr2	200656100	200656334	LTR|Gypsy|MamGypsy2-I	+	chr2	200609242	200671136	AOX1|ENST00000485106.5	+	200609242,200612608,200613803,200615970,200621119,200623860,200627352,200634790,200636910,200638214,200641097,200642609,200650973,200656841,200659164,200659994,200661578,200662854,200666686,200668614,200669574,200670628	200609414,200612793,200613966,200616063,200621246,200623983,200627449,200634915,200637044,200638302,200641184,200642801,200651201,200656937,200659293,200660069,200661631,200662969,200666752,200668803,200669742,200671136	0.571429
adrenal_gland_male_adult_54_years	chr2	218287266	218287306	218287279	-	High_confidence	62	63	160	6.067229	5.748027	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.868750
adrenal_gland_male_adult_54_years	chr7	102973321	102973358	102973321	+	High_confidence	63	64	154	5.839708	5.446909	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973436	102978667	NFE4|ENST00000638942.1	+	102973436,102975890,102978380	102973771,102976230,102978667	0.740260
adrenal_gland_male_adult_54_years	chr13	32503853	32503874	32503873	-	RAMPAGE_only	4	4	18	0.682563	3.191612	chr13	32503763	32504021	SINE|Alu|AluJr4	+	chr13	32432786	32490140	N4BP2L2|ENST00000503296.6	-	32432786,32436360,32438651,32442387,32477886,32480589,32490091	32432972,32436405,32438737,32444126,32478048,32480637,32490140	1.000000
adrenal_gland_male_adult_54_years	chr5	160199150	160199156	160199150	+	High_confidence	122	125	268	10.162609	5.563744	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199150	160238714	STRG.36912.1	+	160199150,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238714	0.947761
adrenal_gland_male_adult_54_years	chr2	113181306	113181308	113181306	+	RAMPAGE_only	6	10	11	0.417122	2.721928	chr2	113181245	113181407	LINE|RTE-X|L4_A_Mam	-	chr2	113173996	113209396	PSD4|ENST00000441564.7	+	113173996,113182345,113184956,113185364,113185960,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197749,113198739,113199082,113201157	113174054,113183512,113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113209396	0.909091
adrenal_gland_male_adult_54_years	chr5	78549206	78549257	78549206	-	High_confidence	3	3	16	0.606723	3.456565	chr5	78548966	78549452	LTR|ERVL-MaLR|MLT1H	-	chr5	78485214	78549151	LHFPL2|ENST00000515007.6	-	78485214,78509783,78549025	78489153,78510398,78549151	0.812500
adrenal_gland_male_adult_54_years	chrX	53585017	53585038	53585017	-	RAMPAGE_only	4	4	11	0.417122	3.121928	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.818182
adrenal_gland_male_adult_54_years	chr1	179302417	179302487	179302486	+	RAMPAGE_only	26	29	104	3.943699	5.593146	chr1	179302291	179302649	LTR|ERVL-MaLR|THE1D	+	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.923077
adrenal_gland_male_adult_54_years	chr7	112452385	112452419	112452385	+	High_confidence	13	13	58	2.199371	5.418157	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112477203	IFRD1|NM_001197079.1	+	112452057,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112452511,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112477203	0.948276
adrenal_gland_male_adult_54_years	chr4	95000465	95000481	95000465	+	RAMPAGE_only	27	28	91	3.450737	4.466517	chr4	95000399	95000534	SINE|Alu|AluSc	+	chr4	94996231	95154673	BMPR1B|ENST00000512312.5	+	94996231,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547	94996384,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95154673	0.901099
adrenal_gland_male_adult_54_years	chr7	107580245	107580267	107580245	+	High_confidence	645	649	3200	121.344589	7.218464	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.926250
adrenal_gland_male_adult_54_years	chr11	60182517	60182551	60182550	-	High_confidence	5	6	17	0.644643	3.572469	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60172014	60183040	MS4A6A|ENST00000420732.6	-	60172014,60173027,60175505,60178259,60179830,60181580,60182977	60172253,60173129,60175611,60178316,60179965,60181741,60183040	0.941176
adrenal_gland_male_adult_54_years	chr6	31587052	31587072	31587052	+	High_confidence	4	4	12	0.455042	3.027169	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587053	31588909	LST1|ENST00000376089.6	+	31587053,31587943,31588517	31587318,31587966,31588909	0.916667
adrenal_gland_male_adult_54_years	chr15	88635654	88635661	88635654	+	High_confidence	4	4	11	0.417122	3.121928	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.818182
adrenal_gland_male_adult_54_years	chr8	145055470	145055539	145055538	+	RAMPAGE_only	30	31	83	3.147375	4.221208	chr8	145055125	145056118	LTR|ERVK|LTR13	+	chr8	145052466	145056030	C8orf33|ENST00000530455.5	+	145052466,145053061,145053296,145054017	145052897,145053146,145053443,145056030	0.987952
adrenal_gland_male_adult_54_years	chr10	45594343	45594364	45594363	-	High_confidence	2	3	10	0.379202	2.947703	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45454592	45594491	STRG.60538.1	-	45454592,45459119,45461230,45464238,45489366,45533109,45553111,45594234	45458543,45459267,45461411,45464327,45489417,45533289,45553204,45594491	0.800000
adrenal_gland_male_adult_54_years	chrX	120143500	120143501	120143500	+	RAMPAGE_only	10	10	11	0.417122	3.121928	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120036235	120146854	RHOXF1-AS1|ENST00000553843.5	+	120036235,120120851,120138997,120143722,120145637	120036532,120121139,120139119,120143900,120146854	0.909091
adrenal_gland_male_adult_54_years	chrX	134949529	134949530	134949529	+	High_confidence	19	22	25	0.948005	4.055958	chrX	134949285	134949569	LTR|ERVL-MaLR|MLT1D	+	chrX	134949548	134953382	LINC02243|ENST00000441841.1	+	134949548,134950199,134952864	134949655,134950535,134953382	0.520000
adrenal_gland_male_adult_54_years	chr21	42534417	42534418	42534417	-	High_confidence	14	16	19	0.720483	3.725481	chr21	42533957	42534487	LINE|L1|L1ME3	-	chr21	42528012	42534448	STRG.100016.1	-	42528012,42534142	42528825,42534448	0.789474
adrenal_gland_male_adult_54_years	chr4	82661449	82661450	82661449	-	RAMPAGE_only	14	14	16	0.606723	3.375000	chr4	82661342	82661539	DNA?|DNA?|MER124	+	chr4	82629536	82798857	SCD5|NM_001037582.2	-	82629536,82636590,82680706,82705282,82798305	82631517,82636823,82680912,82705413,82798857	1.000000
adrenal_gland_male_adult_54_years	chr19	16102050	16102602	16102289	+	RAMPAGE_only	95	117	1060	40.195395	5.124946	chr19	16102068	16102357	SINE|Alu|AluSz	+	chr19	16088710	16102946	TPM4|ENST00000591645.2	+	16088710,16089044,16093535,16093683,16101263	16088849,16089120,16093598,16093753,16102946	0.998113
adrenal_gland_male_adult_54_years	chr3	52518344	52518359	52518344	+	High_confidence	5	7	14	0.530883	3.521641	chr3	52518378	52518454	SINE|MIR|MIR3	+	chr3	52518800	52523476	STAB1|ENST00000481626.5	+	52518800,52519263,52519943,52520399,52520641,52521360,52521595,52521843,52522036,52522329,52522554,52522774,52523024,52523221,52523426	52518869,52519564,52520290,52520549,52521005,52521510,52521700,52521951,52522230,52522474,52522688,52522940,52523134,52523341,52523476	1.000000
adrenal_gland_male_adult_54_years	chr11	77672375	77672430	77672375	-	RAMPAGE_only	37	40	181	6.863553	5.547504	chr11	77672368	77672530	SINE|Alu|AluJb	-	chr11	77659995	77700998	STRG.67121.3	-	77659995,77672041,77675035,77676791,77678085,77683709,77685104,77691158,77693506,77698486	77667491,77672230,77675256,77676999,77678153,77683819,77685159,77691238,77693611,77700998	0.988950
adrenal_gland_male_adult_54_years	chr14	100903673	100903712	100903704	-	High_confidence	10	10	29	1.099685	4.513153	chr14	100903521	100903697	SINE|MIR|MIRb	-	chr14	100879752	100903722	RTL1|ENST00000649591.1	-	100879752,100893443,100903290,100903604	100884874,100893505,100903386,100903722	0.896552
adrenal_gland_male_adult_54_years	chr9	127451136	127451181	127451136	-	High_confidence	5	5	11	0.417122	2.732159	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.818182
adrenal_gland_male_adult_54_years	chr18	36807864	36807870	36807869	-	High_confidence	6	7	13	0.492962	3.084963	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.615385
adrenal_gland_male_adult_54_years	chr1	184590782	184590808	184590795	+	RAMPAGE_only	7	7	30	1.137606	3.419251	chr1	184590844	184591183	DNA|TcMar-Tigger|MER2B	+	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	1.000000
adrenal_gland_male_adult_54_years	chr2	28956553	28956583	28956582	+	RAMPAGE_only	5	5	9	0.341282	2.641604	chr2	28956428	28956586	DNA|hAT-Charlie|MER5A	-	chr2	28970938	28999248	TOGARAM2|ENST00000420297.5	+	28970938,28994724,28998142,28999180	28971114,28994862,28998253,28999248	1.000000
adrenal_gland_male_adult_54_years	chr16	20736862	20736883	20736882	-	RAMPAGE_only	4	4	12	0.455042	3.084963	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	1.000000
adrenal_gland_male_adult_54_years	chr5	69044019	69044036	69044019	-	High_confidence	2	2	9	0.341282	2.750000	chr5	69043966	69044273	SINE|Alu|AluSq	-	chr5	69038517	69043821	AC010273.2|ENST00000479830.2	-	69038517,69043442	69038576,69043821	0.777778
adrenal_gland_male_adult_54_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	7	9	10	0.379202	2.725481	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.700000
adrenal_gland_male_adult_54_years	chr11	72111434	72111497	72111434	-	High_confidence	4	4	17	0.644643	3.625000	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72107158	72111443	ANAPC15|ENST00000543050.5	-	72107158,72110087,72110543,72111156,72111411	72107605,72110225,72110603,72111286,72111443	0.764706
adrenal_gland_male_adult_54_years	chr4	158172987	158173025	158173024	-	High_confidence	1724	1785	3217	121.989232	7.722503	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.873485
adrenal_gland_male_adult_54_years	chr14	101995278	101995300	101995299	+	RAMPAGE_only	2	2	7	0.265441	2.807355	chr14	101995329	101995627	SINE|Alu|AluY	+	chr14	101964572	102011733	DYNC1H1|ENST00000643684.1	+	101964572,101975711,101979318,101979718,101980363,101983018,101983381,101985686,101987452,101988702,101991526,101994183,101994672,101994985,101995180,101997034,101999988,102000285,102000953,102001144,102001534,102002536,102002791,102004517,102005041,102005887,102007007,102008177,102009842,102010275,102010739	101964947,101975799,101979492,101979974,101980550,101983290,101983609,101986763,101987632,101988852,101991673,101994324,101994849,101995096,101995300,101997274,102000144,102000399,102001064,102001354,102001681,102002703,102002965,102004950,102005236,102006170,102007108,102008337,102010086,102010459,102011733	1.000000
adrenal_gland_male_adult_54_years	chr5	150743241	150743281	150743241	-	High_confidence	3	3	10	0.379202	2.921928	chr5	150742837	150748950	LINE|L1|L1PA3	+	chr5	150731063	150743159	DCTN4|ENST00000521728.5	-	150731063,150731415,150733367,150742113,150742817	150731156,150731489,150733475,150742157,150743159	0.900000
adrenal_gland_male_adult_54_years	chr19	46203082	46203083	46203082	-	High_confidence	61	66	66	2.502732	4.455485	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.727273
adrenal_gland_male_adult_54_years	chr1	161118874	161118875	161118874	+	High_confidence	8	8	8	0.303361	2.500000	chr1	161118894	161118942	LINE|L2|L2c	+	chr1	161118907	161119943	NIT1|ENST00000461376.1	+	161118907,161119508,161119818	161119388,161119612,161119943	1.000000
adrenal_gland_male_adult_54_years	chr4	184343954	184343968	184343967	-	RAMPAGE_only	7	7	24	0.910084	3.569774	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184333974	184347906	STRG.31753.1	-	184333974,184334526,184339299,184347712	184334419,184339183,184342053,184347906	0.666667
adrenal_gland_male_adult_54_years	chr3	134485415	134485489	134485462	-	High_confidence	10	11	79	2.995695	5.583068	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.886076
adrenal_gland_male_adult_54_years	chr3	32703788	32703810	32703788	+	High_confidence	5	5	28	1.061765	4.378783	chr3	32703312	32703822	DNA|TcMar-Tigger|MER44B	-	chr3	32703790	32713349	CNOT10|ENST00000485136.5	+	32703790,32704810,32708669,32713226	32703962,32704972,32708820,32713349	0.750000
adrenal_gland_male_adult_54_years	chr5	41426015	41426053	41426015	+	High_confidence	84	91	435	16.495280	4.296213	chr5	41425316	41427700	LINE|L1|L1MC1	-	chr5	41426056	41428627	STRG.32798.1	+	41426056,41428404	41426151,41428627	0.983908
adrenal_gland_male_adult_54_years	chr14	21360429	21360450	21360437	-	RAMPAGE_only	2	2	8	0.303361	2.521641	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351478	21358402	SUPT16H|ENST00000557394.5	-	21351478,21353487,21353702,21354410,21357196,21357926	21352818,21353565,21353832,21354540,21357366,21358402	0.625000
adrenal_gland_male_adult_54_years	chr18	46087018	46087066	46087042	-	High_confidence	26	27	62	2.351051	4.908986	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.854839
adrenal_gland_male_adult_54_years	chr11	72359155	72359216	72359203	-	High_confidence	3	3	16	0.606723	3.640224	chr11	72359191	72359464	LINE|L2|L2c	-	chr11	72294620	72359206	CLPB|ENST00000544382.5	-	72294620,72295491,72301802,72302303,72307198,72308526,72317105,72329706,72358879,72359137	72294693,72295648,72301964,72302348,72307254,72308604,72317220,72329804,72359008,72359206	0.937500
adrenal_gland_male_adult_54_years	chr10	65570497	65570522	65570521	+	High_confidence	4	8	22	0.834244	3.684184	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570874	65615757	LINC01515|ENST00000593568.1	+	65570874,65572934,65585484,65615635	65571579,65573056,65585567,65615757	0.727273
adrenal_gland_male_adult_54_years	chr20	56367278	56367321	56367317	+	RAMPAGE_only	5	5	25	0.948005	3.973661	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	1.000000
adrenal_gland_male_adult_54_years	chr2	46903732	46903749	46903748	-	RAMPAGE_only	4	4	11	0.417122	2.921928	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.909091
adrenal_gland_male_adult_54_years	chr14	94581618	94581676	94581618	+	High_confidence	11	22	79	2.995695	4.924441	chr14	94581654	94581760	SINE|MIR|MIRb	+	chr14	94581614	94593115	SERPINA5|ENST00000554276.1	+	94581614,94587345,94590040,94590748,94592056	94581710,94587981,94590311,94590896,94593115	0.974684
adrenal_gland_male_adult_54_years	chr19	50016109	50016129	50016110	-	RAMPAGE_only	2	3	8	0.303361	2.521641	chr19	50016092	50016166	DNA|hAT-Ac|OldhAT1	-	chr19	49994862	50020647	VRK3|ENST00000599342.5	-	49994862,50000789,50007568,50009235,50015731,50016023,50020584	49994919,50000854,50007826,50009385,50015793,50016163,50020647	0.875000
adrenal_gland_male_adult_54_years	chr3	44439857	44439906	44439905	-	High_confidence	7	7	26	0.985925	4.238901	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421126	44439917	C3orf86|ENST00000636468.1	-	44421126,44439796	44421813,44439917	0.692308
adrenal_gland_male_adult_54_years	chr10	102449836	102449845	102449836	+	High_confidence	36	37	79	2.995695	4.931075	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449841	102455883	STRG.62654.1	+	102449841,102450186,102451398,102452065,102455336	102450022,102450330,102451555,102452187,102455883	0.949367
adrenal_gland_male_adult_54_years	chr2	85354337	85354338	85354337	-	High_confidence	10	10	10	0.379202	3.121928	chr2	85354216	85354326	SINE|MIR|MIR1_Amn	-	chr2	85349431	85354506	RETSAT|ENST00000409984.2	-	85349431,85350039,85350779,85354335	85349581,85350241,85351021,85354506	0.800000
adrenal_gland_male_adult_54_years	chr5	150640005	150640051	150640050	+	High_confidence	159	167	697	26.430368	7.358279	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150639659	150659213	STRG.36639.3	+	150639659,150647943,150656403	150640134,150650303,150659213	0.982783
adrenal_gland_male_adult_54_years	chr2	11201309	11201383	11201309	-	RAMPAGE_only	7	7	30	1.137606	4.423252	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.933333
adrenal_gland_male_adult_54_years	chr7	102973258	102973291	102973265	-	High_confidence	18	18	54	2.047690	4.921192	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102813074	102973228	STRG.47842.1	-	102813074,102822039,102854776,102877466,102878330,102883304,102883567,102884213,102913085,102926273,102931880,102963532,102968021,102973149	102813531,102822203,102854860,102877593,102878450,102883467,102883685,102884312,102913215,102926374,102931933,102963665,102968117,102973228	0.962963
adrenal_gland_male_adult_54_years	chr8	143558019	143558020	143558019	+	High_confidence	28	28	28	1.061765	4.178439	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	1.000000
adrenal_gland_male_adult_54_years	chr3	44391330	44391331	44391330	+	RAMPAGE_only	12	12	12	0.455042	3.584963	chr3	44391184	44391489	SINE|Alu|AluSx4	-	chr3	44338805	44400550	TCAIM|ENST00000417768.1	+	44338805,44354738,44357740,44361364,44367531,44392854,44396399,44396742,44400354	44338834,44354811,44357876,44361518,44367708,44392977,44396497,44396834,44400550	0.750000
adrenal_gland_male_adult_54_years	chr1	6639903	6639961	6639903	-	RAMPAGE_only	3	3	16	0.606723	3.456565	chr1	6639724	6639885	SINE|MIR|MIR	-	chr1	6634167	6645057	DNAJC11|ENST00000465508.5	-	6634167,6636116,6637197,6637446,6639901,6644557,6645040	6635700,6636246,6637340,6638364,6640057,6644674,6645057	0.937500
adrenal_gland_male_adult_54_years	chr11	65433890	65433907	65433906	+	RAMPAGE_only	4	4	14	0.530883	2.815072	chr11	65433870	65434194	LINE|L1|L1ME3F	-	chr11	65423637	65445540	STRG.66558.14	+	65423637,65432397	65432372,65445540	0.928571
adrenal_gland_male_adult_54_years	chr5	55982744	55982801	55982788	-	High_confidence	3	4	21	0.796324	3.916127	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	1.000000
adrenal_gland_male_adult_54_years	chr1	85379647	85379671	85379647	-	RAMPAGE_only	4	4	16	0.606723	3.323231	chr1	85379540	85379612	SINE|MIR|MIR	-	chr1	85321451	85404528	DDAH1|ENST00000633113.1	-	85321451,85324739,85350414,85351505,85358747,85404380	85321568,85324883,85350534,85351579,85358847,85404528	0.812500
adrenal_gland_male_adult_54_years	chr11	125895226	125895273	125895226	-	RAMPAGE_only	2	3	13	0.492962	3.084963	chr11	125895047	125895200	SINE|Alu|AluSc8	-	chr11	125893484	125896330	PUS3|ENST00000530811.5	-	125893484,125895223,125895906	125894286,125895789,125896330	0.923077
adrenal_gland_male_adult_54_years	chrX	51819345	51819346	51819345	+	RAMPAGE_only	12	12	12	0.455042	2.855389	chrX	51819123	51819506	LTR|ERVL|LTR52	+	chrX	51803058	51902354	MAGED1|NM_001005332.1	+	51803058,51894268,51895052,51896408,51897207,51897546,51897794,51898113,51898284,51898580,51900181,51901552,51902145	51803117,51894349,51895760,51897077,51897271,51897626,51897886,51898193,51898327,51898643,51900296,51901938,51902354	0.916667
adrenal_gland_male_adult_54_years	chr1	156252925	156252970	156252925	-	RAMPAGE_only	4	6	14	0.530883	3.664498	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156250032	156251380	SMG5|ENST00000476954.1	-	156250032,156250857	156250670,156251380	0.571429
adrenal_gland_male_adult_54_years	chr18	50843101	50843104	50843103	-	RAMPAGE_only	8	14	21	0.796324	3.784942	chr18	50842925	50843332	LTR|ERVL|MLT2D	-	chr18	50798376	50825402	MRO|ENST00000428869.6	-	50798376,50800035,50801348,50805153,50806703,50809301,50816123,50819580,50825308	50799390,50800143,50801504,50805336,50806850,50809404,50816162,50819702,50825402	0.904762
adrenal_gland_male_adult_54_years	chr9	127509361	127509376	127509361	-	RAMPAGE_only	3	3	11	0.417122	2.732159	chr9	127509331	127509530	SINE|MIR|MIR3	+	chr9	127507183	127569076	FAM129B|ENST00000484348.2	-	127507183,127507866,127508092,127508421,127568914	127507431,127507978,127508200,127508445,127569076	0.636364
adrenal_gland_male_adult_54_years	chr2	36513735	36513736	36513735	+	High_confidence	9	9	14	0.530883	2.565448	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.785714
adrenal_gland_male_adult_54_years	chr22	24573591	24573592	24573591	+	RAMPAGE_only	10	10	12	0.455042	3.084963	chr22	24573592	24573899	SINE|Alu|AluJo	+	chr22	24555649	24574964	SNRPD3|NM_001278656.1	+	24555649,24557656,24567983,24571915	24556057,24557800,24568176,24574964	1.000000
adrenal_gland_male_adult_54_years	chr16	85322726	85322730	85322729	+	RAMPAGE_only	4	4	9	0.341282	2.725481	chr16	85322608	85322915	SINE|Alu|AluSx1	-	chr16	85357462	85359449	GSE1|ENST00000568080.1	+	85357462,85359341	85357643,85359449	0.777778
adrenal_gland_male_adult_54_years	chr8	53523963	53523967	53523966	-	High_confidence	4	6	10	0.379202	2.846439	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
adrenal_gland_male_adult_54_years	chr6	87562704	87562728	87562727	-	RAMPAGE_only	3	3	8	0.303361	2.521641	chr6	87562493	87562687	LINE|L2|L2b	-	chr6	87513423	87589999	STRG.41284.2	-	87513423,87514956,87516805,87518168,87518629,87518823,87519582,87520179,87521463,87524556,87529541,87530783,87541917,87545615,87548590,87555407,87562701,87564129,87569516,87589700	87514499,87515020,87516880,87518264,87518739,87518891,87519707,87520256,87521524,87524652,87529648,87530942,87541994,87545699,87548646,87555505,87562785,87564232,87569590,87589999	0.875000
adrenal_gland_male_adult_54_years	chr13	22040971	22040975	22040971	+	High_confidence	12	13	20	0.758404	4.221928	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.650000
adrenal_gland_male_adult_54_years	chr3	33129942	33130063	33130062	+	RAMPAGE_only	14	17	83	3.147375	5.066061	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	1.000000
adrenal_gland_male_adult_54_years	chr2	168841856	168841873	168841872	+	RAMPAGE_only	4	5	8	0.303361	3.000000	chr2	168841678	168842328	LTR|ERV1|MER39B	-	chr2	168843051	168855654	NOSTRIN|ENST00000486873.2	+	168843051,168851083,168851278,168855351	168843117,168851182,168851404,168855654	0.750000
adrenal_gland_male_adult_54_years	chr4	119217597	119217650	119217649	+	RAMPAGE_only	3	3	10	0.379202	2.921928	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212635	119294746	USP53|ENST00000274030.10	+	119212635,119214069,119217549,119235289,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119212873,119214222,119217673,119235411,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119294746	1.000000
adrenal_gland_male_adult_54_years	chr22	39320328	39320380	39320334	-	High_confidence	9	9	27	1.023845	4.243856	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.925926
adrenal_gland_male_adult_54_years	chr3	197299307	197299321	197299320	-	High_confidence	4	7	17	0.644643	3.625000	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.647059
adrenal_gland_male_adult_54_years	chr9	113375459	113375465	113375464	-	High_confidence	8	8	16	0.606723	3.500000	chr9	113375358	113375529	SINE|MIR|MIR3	-	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	1.000000
adrenal_gland_male_adult_54_years	chr9	121281886	121281892	121281886	+	RAMPAGE_only	8	8	16	0.606723	3.452820	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.875000
adrenal_gland_male_adult_54_years	chr1	16208435	16208453	16208444	-	High_confidence	6	6	17	0.644643	3.750000	chr1	16208394	16208524	SINE|MIR|MIRc	+	chr1	16204810	16208430	STRG.879.2	-	16204810,16205086,16205350,16205537,16205930,16206179,16206947,16207521,16207674,16207943	16204919,16205176,16205425,16205667,16206083,16206340,16207210,16207598,16207777,16208430	0.823529
adrenal_gland_male_adult_54_years	chrX	48683361	48683363	48683362	+	High_confidence	54	100	101	3.829939	5.207139	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.930693
adrenal_gland_male_adult_54_years	chr12	50924027	50924038	50924027	+	High_confidence	8	8	19	0.720483	3.471354	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50924004	50929955	METTL7A|ENST00000550502.1	+	50924004,50925036,50929913	50924080,50925536,50929955	0.842105
adrenal_gland_male_adult_54_years	chr9	129489063	129489126	129489125	+	High_confidence	17	25	104	3.943699	5.833719	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.894231
adrenal_gland_male_adult_54_years	chr12	93773375	93773412	93773411	+	RAMPAGE_only	9	9	39	1.478887	4.036980	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.897436
adrenal_gland_male_adult_54_years	chr10	91796469	91796502	91796469	+	RAMPAGE_only	1	1	8	0.303361	2.807355	chr10	91796343	91796573	DNA|hAT-Charlie|MER1A	-	chr10	91798311	91865276	TNKS2|ENST00000371627.4	+	91798311,91812982,91817133,91819269,91819481,91819938,91822295,91827016,91828284,91830922,91831102,91833852,91836918,91840560,91841282,91842171,91844918,91845751,91848382,91849511,91851215,91855028,91855613,91857424,91859461,91861998,91862936	91798889,91813207,91817229,91819306,91819557,91820033,91822362,91827203,91828406,91831014,91831181,91834024,91836998,91840706,91841448,91842391,91845028,91845940,91848635,91849594,91851336,91855126,91855688,91857530,91859648,91862155,91865276	0.625000
adrenal_gland_male_adult_54_years	chr2	26696423	26696447	26696423	-	High_confidence	20	23	78	2.957774	5.625020	chr2	26696141	26696387	SINE|MIR|MIRc	-	chr2	26694315	26696437	STRG.10602.1	-	26694315	26696437	0.628205
adrenal_gland_male_adult_54_years	chr1	1989109	1989143	1989109	-	High_confidence	15	16	71	2.692333	5.578912	chr1	1989070	1989156	LTR|ERVL|LTR18B	+	chr1	1979875	1989134	STRG.144.1	-	1979875,1985338,1986936,1988511,1988888	1979924,1985490,1987035,1988655,1989134	0.887324
adrenal_gland_male_adult_54_years	chr14	89486637	89486670	89486669	-	RAMPAGE_only	4	4	8	0.303361	2.750000	chr14	89486513	89486649	SINE|5S-Deu-L2|AmnSINE1	-	chr14	89161384	89417112	FOXN3|ENST00000557258.5	-	89161384,89180700,89280949,89350671,89411933,89416870	89162969,89180806,89281014,89350808,89412490,89417112	0.875000
adrenal_gland_male_adult_54_years	chr11	123060124	123060229	123060151	-	High_confidence	30	43	394	14.940553	5.767717	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.619289
adrenal_gland_male_adult_54_years	chr16	15798662	15798675	15798664	-	RAMPAGE_only	3	6	11	0.417122	2.721928	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.909091
adrenal_gland_male_adult_54_years	chr1	25820173	25820216	25820192	+	High_confidence	23	23	166	6.294751	5.545858	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.620482
adrenal_gland_male_adult_54_years	chr2	159428332	159428404	159428356	-	RAMPAGE_only	7	11	45	1.706408	4.850534	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.600000
adrenal_gland_male_adult_54_years	chr16	67571177	67571196	67571188	+	High_confidence	3	3	12	0.455042	3.095795	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.833333
adrenal_gland_male_adult_54_years	chr19	20423688	20423704	20423703	-	RAMPAGE_only	22	31	68	2.578573	4.422610	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.823529
adrenal_gland_male_adult_54_years	chr1	97904654	97904676	97904654	-	RAMPAGE_only	4	4	9	0.341282	2.641604	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.888889
adrenal_gland_male_adult_54_years	chr3	130821183	130821203	130821191	+	High_confidence	3	3	11	0.417122	3.459432	chr3	130821102	130821255	LTR|ERVL-MaLR|MLT1E1A	+	chr3	130821183	130823914	AC097105.1|ENST00000647973.1	+	130821183,130822699	130821584,130823914	0.727273
adrenal_gland_male_adult_54_years	chr7	150325888	150325934	150325888	+	RAMPAGE_only	76	78	116	4.398741	6.006234	chr7	150325771	150325966	DNA|hAT-Charlie|Chap1_Mam	+	chr7	150322638	150332721	STRG.49780.4	+	150322638,150325840,150328634	150323212,150326010,150332721	0.887931
adrenal_gland_male_adult_54_years	chr1	77169295	77169332	77169331	-	RAMPAGE_only	3	3	15	0.568803	3.378783	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77088989	77219426	PIGK|ENST00000370812.7	-	77088989,77122274,77154448,77161294,77161593,77163845,77166718,77169259,77206639,77210435,77219309	77092490,77122359,77154621,77161405,77161711,77163942,77166830,77169395,77206731,77210489,77219426	0.933333
adrenal_gland_male_adult_54_years	chr12	7137085	7137098	7137097	+	RAMPAGE_only	13	13	27	1.023845	3.921030	chr12	7137127	7137213	SINE|MIR|MIR1_Amn	+	chr12	7138681	7143198	CLSTN3|ENST00000544584.1	+	7138681,7141241,7142085,7142868,7143162	7138816,7141404,7142139,7143026,7143198	0.962963
adrenal_gland_male_adult_54_years	chr22	46171258	46171301	46171300	+	RAMPAGE_only	3	3	16	0.606723	3.640224	chr22	46171297	46171902	LINE|L2|L2a	-	chr22	46176747	46235403	PPARA|ENST00000402126.1	+	46176747,46198344,46215172,46218262,46219811,46231791,46235132	46176836,46198591,46215333,46218401,46220014,46232239,46235403	0.500000
adrenal_gland_male_adult_54_years	chr4	6927312	6927319	6927318	+	RAMPAGE_only	5	5	12	0.455042	2.913977	chr4	6927305	6927415	SINE|MIR|MIR	+	chr4	6909844	7033111	TBC1D14|ENST00000409757.8	+	6909844,6923372,6967303,6994183,6996324,6999084,7001144,7004843,7006631,7009876,7010652,7014447,7025003,7030326	6909951,6924111,6967424,6994302,6996407,6999202,7001251,7004924,7006726,7009948,7010781,7014557,7025262,7033111	0.750000
adrenal_gland_male_adult_54_years	chr12	116759927	116759935	116759927	+	High_confidence	18	21	41	1.554728	3.452078	chr12	116756444	116760863	LINE|L1|L1PB1	-	chr12	116759871	116760274	STRG.74516.1	+	116759871	116760274	0.878049
adrenal_gland_male_adult_54_years	chr1	110897859	110897876	110897875	+	RAMPAGE_only	3	3	9	0.341282	2.500000	chr1	110897898	110898002	SINE|MIR|MIR	+	chr1	110894308	110899851	CD53|ENST00000497404.1	+	110894308,110894959,110899123	110894401,110895055,110899851	0.888889
adrenal_gland_male_adult_54_years	chr18	28159255	28159297	28159296	-	High_confidence	25	26	39	1.478887	4.311706	chr18	28159142	28159517	LTR|ERVL|LTR79	+	chr18	28011917	28159297	CDH2|ENST00000413878.1	-	28011917,28013682,28147672,28159148	28011992,28013909,28147784,28159297	0.846154
adrenal_gland_male_adult_54_years	chr19	7635818	7635830	7635819	-	RAMPAGE_only	8	14	35	1.327206	4.314973	chr19	7635792	7635861	DNA|hAT-Blackjack|MER81	+	chr19	7631614	7633748	PCP2|ENST00000311069.5	-	7631614,7632392,7632715,7633406	7631808,7632517,7632830,7633748	0.885714
adrenal_gland_male_adult_54_years	chr7	158863392	158863419	158863392	+	RAMPAGE_only	3	3	17	0.644643	3.616875	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.882353
adrenal_gland_male_adult_54_years	chr20	50267474	50267502	50267474	+	High_confidence	19	27	139	5.270906	5.054886	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.985612
adrenal_gland_male_adult_54_years	chr7	100037729	100037730	100037729	+	RAMPAGE_only	21	21	27	1.023845	3.699471	chr7	100037735	100038031	SINE|Alu|AluSx3	+	chr7	100023407	100041688	ZKSCAN1|ENST00000620510.1	+	100023407,100023551,100024153,100029860,100030248,100033304	100023461,100023932,100024307,100029952,100030375,100041688	0.925926
adrenal_gland_male_adult_54_years	chr6	35672673	35672691	35672673	-	RAMPAGE_only	6	6	12	0.455042	3.022055	chr6	35672643	35672949	SINE|Alu|AluY	+	chr6	35573584	35688915	FKBP5|ENST00000539068.5	-	35573584,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35688731	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35642843,35688915	0.916667
adrenal_gland_male_adult_54_years	chr9	125538282	125538302	125538282	+	RAMPAGE_only	117	120	184	6.977314	5.319667	chr9	125538091	125538491	LINE|L2|L2	-	chr9	125541074	125542044	STRG.58531.1	+	125541074	125542044	1.000000
adrenal_gland_male_adult_54_years	chr12	10553364	10553365	10553364	+	High_confidence	11	13	13	0.492962	3.180833	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	1.000000
adrenal_gland_male_adult_54_years	chr12	91179028	91179045	91179044	-	High_confidence	5	5	10	0.379202	2.846439	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.800000
adrenal_gland_male_adult_54_years	chr7	66430226	66430232	66430226	-	RAMPAGE_only	4	4	8	0.303361	2.521641	chr7	66430180	66430480	LTR|ERV1|MER61A	-	chr7	66423404	66423893	SKP1P1|ENST00000438081.1	-	66423404	66423893	0.500000
adrenal_gland_male_adult_54_years	chr7	134432378	134432463	134432435	-	High_confidence	10	10	47	1.782249	4.805911	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.829787
adrenal_gland_male_adult_54_years	chr6	76877048	76877075	76877074	-	High_confidence	4	6	10	0.379202	3.121928	chr6	76875759	76877075	LINE|L1|L1HS	-	chr6	76875579	76877331	STRG.40620.1	-	76875579	76877331	1.000000
adrenal_gland_male_adult_54_years	chr12	124355447	124355448	124355447	-	RAMPAGE_only	8	8	11	0.417122	3.459432	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124347401	124348940	NCOR2|ENST00000473999.2	-	124347401,124348173	124347911,124348940	0.545455
adrenal_gland_male_adult_54_years	chr20	45827642	45827644	45827643	-	High_confidence	4	7	8	0.303361	2.750000	chr20	45827623	45827844	SINE|MIR|MIRc	+	chr20	45823213	45827341	TNNC2|ENST00000372555.7	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827341	1.000000
adrenal_gland_male_adult_54_years	chr3	188397636	188397667	188397661	+	RAMPAGE_only	3	3	10	0.379202	2.721928	chr3	188397610	188397913	SINE|Alu|AluSz	-	chr3	188568149	188609551	LPP|ENST00000462758.1	+	188568149,188609160	188568322,188609551	0.600000
adrenal_gland_male_adult_54_years	chr15	89200344	89200397	89200366	+	RAMPAGE_only	4	4	23	0.872164	3.969002	chr15	89200250	89200502	Retroposon|SVA|SVA_F	-	chr15	89088149	89202360	ABHD2|NM_007011.7	+	89088149,89090282,89102499,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89202360	1.000000
adrenal_gland_male_adult_54_years	chr5	34244813	34244816	34244815	-	High_confidence	4	8	10	0.379202	2.503258	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.800000
adrenal_gland_male_adult_54_years	chr8	86368952	86368953	86368952	+	RAMPAGE_only	6	7	7	0.265441	2.807355	chr8	86368776	86369052	LINE|L2|L2c	+	chr8	86374040	86467476	WWP1|ENST00000265428.4	+	86374040,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	0.857143
adrenal_gland_male_adult_54_years	chr1	155637559	155637569	155637568	-	High_confidence	50	55	125	4.740023	5.523129	chr1	155637451	155637661	LTR|ERV1|LTR12F	-	chr1	155626905	155637701	STRG.5888.1	-	155626905,155634769,155637393	155627727,155634846,155637701	0.576000
adrenal_gland_male_adult_54_years	chr13	113187420	113187472	113187444	-	High_confidence	6	6	27	1.023845	4.323856	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.851852
adrenal_gland_male_adult_54_years	chr5	148319972	148319975	148319974	+	RAMPAGE_only	8	13	18	0.682563	3.503258	chr5	148319975	148321427	LINE|L1|L1P1	+	chr5	148321202	148339722	SPINK9|ENST00000511717.6	+	148321202,148323678,148336421,148338477,148339666	148321400,148323868,148336453,148338605,148339722	0.722222
adrenal_gland_male_adult_54_years	chr20	50131135	50131162	50131161	-	High_confidence	3	5	14	0.530883	3.392747	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.857143
adrenal_gland_male_adult_54_years	chr2	55618850	55618851	55618850	-	High_confidence	14	16	19	0.720483	3.932138	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.789474
adrenal_gland_male_adult_54_years	chr3	29280832	29280877	29280832	-	High_confidence	11	11	58	2.199371	5.420438	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280939	RBMS3-AS3|NR_109804.1	-	29264193,29274322,29280730	29264757,29274429,29280939	0.551724
adrenal_gland_male_adult_54_years	chr19	51795150	51795187	51795186	+	High_confidence	18	19	90	3.412817	5.388695	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.944444
adrenal_gland_male_adult_54_years	chr5	149887611	149887618	149887617	-	RAMPAGE_only	7	12	20	0.758404	3.681881	chr5	149887556	149888026	LTR|ERV1|LTR46	+	chr5	149857954	149944793	PDE6A|ENST00000617647.4	-	149857954,149859891,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647,149907311,149914942,149921634,149931027,149944199	149858530,149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149903695,149907378,149915007,149921709,149931168,149944793	0.600000
adrenal_gland_male_adult_54_years	chr14	50756643	50756674	50756673	-	RAMPAGE_only	4	4	10	0.379202	2.947703	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.900000
adrenal_gland_male_adult_54_years	chr1	166850123	166850128	166850123	+	RAMPAGE_only	6	9	15	0.568803	3.640224	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
adrenal_gland_male_adult_54_years	chr7	25579775	25579817	25579810	-	High_confidence	2	2	10	0.379202	2.947703	chr7	25579571	25579766	LTR|ERVL-MaLR|MLT1L	-	chr7	25579212	25579934	STRG.45231.1	-	25579212	25579934	0.500000
adrenal_gland_male_adult_54_years	chr14	53217609	53217615	53217614	+	High_confidence	4	5	15	0.568803	3.640224	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217527	53218255	STRG.78898.1	+	53217527	53218255	0.600000
adrenal_gland_male_adult_54_years	chr11	10450112	10450139	10450138	+	High_confidence	2	2	6	0.227521	2.584963	chr11	10449604	10450192	LINE|L2|L2	-	chr11	10450320	10482168	STRG.64225.8	+	10450320,10461514,10478525,10482062	10450515,10461740,10478730,10482168	0.833333
adrenal_gland_male_adult_54_years	chr15	45631147	45631148	45631147	+	High_confidence	25	26	26	0.985925	3.863465	chr15	45630952	45631306	LTR|ERVL-MaLR|THE1A	+	chr15	45631147	45691280	SQOR|ENST00000568606.5	+	45631147,45631926,45658906,45661954,45669927,45673606,45676100,45682477,45688336,45689038,45690972	45631230,45632015,45659157,45662125,45669981,45673801,45676310,45682661,45688404,45689217,45691280	0.923077
adrenal_gland_male_adult_54_years	chr4	183618715	183618749	183618735	-	RAMPAGE_only	9	11	52	1.971850	4.744726	chr4	183618405	183618902	LTR|ERVL|MLT2C2	-	chr4	183558239	183576702	STRG.31664.1	-	183558239,183567217,183576350	183558579,183568323,183576702	0.750000
adrenal_gland_male_adult_54_years	chr4	4477582	4477601	4477600	-	RAMPAGE_only	10	10	16	0.606723	3.189898	chr4	4477450	4477692	SINE|MIR|MIR	-	chr4	4425160	4461954	STX18|ENST00000512195.5	-	4425160,4434769,4438393,4457190,4457422,4459371,4461905	4425222,4434858,4438509,4457257,4457500,4459487,4461954	0.875000
adrenal_gland_male_adult_54_years	chr1	179856083	179856098	179856083	-	RAMPAGE_only	2	2	8	0.303361	2.807355	chr1	179855896	179856189	SINE|Alu|AluSz	+	chr1	179840086	179877772	STRG.6809.1	-	179840086,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877772	0.875000
adrenal_gland_male_adult_54_years	chr2	6866529	6866553	6866552	-	High_confidence	8	8	16	0.606723	3.373557	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.875000
adrenal_gland_male_adult_54_years	chr10	78977907	78977924	78977923	-	RAMPAGE_only	4	4	10	0.379202	3.169925	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78962394	ZMIZ1-AS1|ENST00000428862.5	-	78943327,78945911,78960504,78961253	78944747,78945989,78960716,78962394	0.800000
adrenal_gland_male_adult_54_years	chr12	123390743	123390774	123390743	+	High_confidence	3	3	8	0.303361	3.000000	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	1.000000
adrenal_gland_male_adult_54_years	chr10	16467147	16467150	16467149	+	RAMPAGE_only	3	5	7	0.265441	2.807355	chr10	16467096	16467427	DNA|TcMar-Tigger|MER44A	+	chr10	16484334	16513745	PTER|ENST00000298942.4	+	16484334,16486351,16511045	16484816,16486617,16513745	1.000000
adrenal_gland_male_adult_54_years	chr22	39018666	39018692	39018691	+	RAMPAGE_only	8	9	19	0.720483	3.932138	chr22	39018697	39018999	SINE|Alu|AluJb	+	chr22	39014082	39020352	APOBEC3C|ENST00000361441.4	+	39014082,39015594,39017765,39018268	39014379,39015751,39018045,39020352	1.000000
adrenal_gland_male_adult_54_years	chr2	227164611	227164621	227164620	+	High_confidence	9	9	15	0.568803	3.664498	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.866667
adrenal_gland_male_adult_54_years	chr1	58903660	58903680	58903672	-	High_confidence	3	3	14	0.530883	3.664498	chr1	58903524	58903639	SINE|MIR|MIRb	-	chr1	58882871	58903679	AC105277.1|ENST00000635492.1	-	58882871,58889148,58895844,58896997,58903567	58883734,58889208,58896009,58897090,58903679	1.000000
adrenal_gland_male_adult_54_years	chr2	96303177	96303280	96303177	-	RAMPAGE_only	14	16	118	4.474582	5.664825	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
adrenal_gland_male_adult_54_years	chr22	50757129	50757147	50757129	+	High_confidence	2	2	9	0.341282	2.750000	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.888889
adrenal_gland_male_adult_54_years	chr6	28335904	28335921	28335904	-	High_confidence	4	4	16	0.606723	3.625000	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.750000
adrenal_gland_male_adult_54_years	chr5	90993197	90993217	90993206	+	RAMPAGE_only	6	6	25	0.948005	4.303509	chr5	90993154	90993450	SINE|Alu|AluSx4	-	chr5	90965069	91164257	STRG.34329.1	+	90965069,90985343,91072446,91102218,91150029,91153220,91163781	90965531,90985522,91072604,91102340,91150221,91153398,91164257	0.880000
adrenal_gland_male_adult_54_years	chr20	56367491	56367700	56367491	+	RAMPAGE_only	11	13	150	5.688028	5.100444	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	0.993333
adrenal_gland_male_adult_54_years	chr2	39571537	39571545	39571544	+	RAMPAGE_only	3	4	7	0.265441	2.807355	chr2	39571462	39571913	LINE|L2|L2c	+	chr2	39437415	39601344	AC007388.1|ENST00000449569.5	+	39437415,39453838,39454296,39516413,39518582,39599365	39437535,39453931,39454365,39516541,39518710,39601344	1.000000
adrenal_gland_male_adult_54_years	chr7	64999443	64999444	64999443	-	RAMPAGE_only	93	102	119	4.512502	6.143923	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64974451	65006653	STRG.46308.2	-	64974451,64981386,64981983,64989946,64999120,65000695,65006512	64979536,64981482,64982116,64993414,65000365,65006421,65006653	0.747899
adrenal_gland_male_adult_54_years	chr19	49539150	49539158	49539150	+	RAMPAGE_only	12	14	25	0.948005	3.364889	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49527617	49543638	RCN3|ENST00000270645.7	+	49527617,49528466,49534192,49537032,49539118,49542552,49543105	49528058,49528714,49534395,49537205,49539179,49542752,49543638	1.000000
adrenal_gland_male_adult_54_years	chr20	25191790	25191852	25191794	-	RAMPAGE_only	33	33	117	4.436662	6.164986	chr20	25191623	25192078	LTR|ERVL|MER70A	-	chr20	25178958	25196709	STRG.97876.1	-	25178958,25186896,25187852,25196622	25186160,25186979,25187947,25196709	0.760684
adrenal_gland_male_adult_54_years	chr4	2867795	2867857	2867850	+	High_confidence	72	73	330	12.513661	6.395112	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.996970
adrenal_gland_male_adult_54_years	chr5	96934454	96934465	96934454	+	RAMPAGE_only	8	8	19	0.720483	3.536887	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	1.000000
adrenal_gland_male_adult_54_years	chr19	35164180	35164209	35164208	+	High_confidence	3	3	12	0.455042	2.918296	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	1.000000
adrenal_gland_male_adult_54_years	chr10	78977960	78977973	78977968	-	RAMPAGE_only	7	7	26	0.985925	3.855389	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78962394	ZMIZ1-AS1|ENST00000428862.5	-	78943327,78945911,78960504,78961253	78944747,78945989,78960716,78962394	0.692308
adrenal_gland_male_adult_54_years	chr7	107069861	107069866	107069861	+	RAMPAGE_only	6	6	12	0.455042	3.418296	chr7	107069817	107070165	LINE|L1|L1ME4c	-	chr7	107091675	107146462	PRKAR2B|ENST00000488792.1	+	107091675,107121951,107128211,107140846,107146307	107091885,107122004,107128295,107140953,107146462	0.666667
adrenal_gland_male_adult_54_years	chr2	27893866	27893943	27893866	+	High_confidence	25	25	87	3.299056	5.056340	chr2	27893713	27894016	SINE|Alu|AluSc	+	chr2	27894544	28233315	BABAM2|ENST00000379629.7	+	27894544,27929831,27987992,28025225,28045724,28129270,28233142	27894684,27929908,27988087,28025420,28045799,28129380,28233315	0.908046
adrenal_gland_male_adult_54_years	chr16	21634404	21634405	21634404	-	RAMPAGE_only	7	8	11	0.417122	3.121928	chr16	21631296	21636946	LTR|ERV1|HERV9NC-int	-	chr16	21629674	21630751	STRG.86055.1	-	21629674	21630751	0.909091
adrenal_gland_male_adult_54_years	chr8	65979196	65979197	65979196	+	RAMPAGE_only	13	13	14	0.530883	3.392747	chr8	65979005	65979377	LTR|ERVL-MaLR|THE1B	+	chr8	66021555	66100520	DNAJC5B|NM_033105.4	+	66021555,66043487,66051530,66076659,66080376,66099936	66021705,66043611,66051666,66076873,66080548,66100520	0.785714
adrenal_gland_male_adult_54_years	chr4	118692031	118692060	118692059	+	RAMPAGE_only	3	3	7	0.265441	2.521641	chr4	118692102	118692201	DNA|TcMar-Tigger|Tigger19a	+	chr4	118697210	118710601	METTL14|ENST00000506780.2	+	118697210,118700549,118703934,118709997	118697323,118700642,118704051,118710601	0.857143
adrenal_gland_male_adult_54_years	chr6	31587007	31587014	31587009	+	High_confidence	24	45	74	2.806094	5.014832	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.918919
adrenal_gland_male_adult_54_years	chr6	118651542	118651626	118651592	-	High_confidence	18	18	95	3.602417	5.412205	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.989474
adrenal_gland_male_adult_54_years	chr3	129586587	129586597	129586596	-	RAMPAGE_only	4	4	10	0.379202	2.521928	chr3	129586391	129586559	LINE|L2|L2c	-	chr3	129571539	129606661	STRG.23015.2	-	129571539,129571676,129572608,129572841,129573593,129574335,129575468,129575765,129578328,129583566,129584124,129584384,129585951,129586171,129586587,129589350,129605328,129606059	129571599,129571844,129572748,129572941,129573745,129574490,129575562,129575855,129578433,129583669,129584233,129584562,129586081,129586272,129586719,129589527,129606027,129606661	1.000000
adrenal_gland_male_adult_54_years	chr2	200889215	200889230	200889215	-	High_confidence	2	3	8	0.303361	2.750000	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870906	200889269	PPIL3|ENST00000286175.12	-	200870906,200876918,200881420,200885261,200885697,200887612,200888955	200871521,200877037,200881488,200885367,200885772,200887685,200889269	1.000000
adrenal_gland_male_adult_54_years	chr3	135965673	135965749	135965748	+	High_confidence	34	34	221	8.380361	6.096130	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.990950
adrenal_gland_male_adult_54_years	chr5	140596612	140596627	140596626	+	High_confidence	5	5	11	0.417122	3.095795	chr5	140596528	140596989	LTR|ERVL|MER70A	+	chr5	140596602	140613045	STRG.36140.1	+	140596602,140612875	140596891,140613045	0.545455
adrenal_gland_male_adult_54_years	chr11	65431863	65432065	65431913	+	RAMPAGE_only	6	8	95	3.602417	5.521850	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65423637	65445540	STRG.66558.14	+	65423637,65432397	65432372,65445540	0.989474
adrenal_gland_male_adult_54_years	chr3	114380840	114380907	114380891	-	RAMPAGE_only	5	5	26	0.985925	3.522055	chr3	114380802	114381001	SINE|MIR|MIR3	+	chr3	114338652	114383641	ZBTB20|ENST00000474710.5	-	114338652,114350273,114380216,114380776,114383615	114339426,114351878,114380404,114380940,114383641	0.923077
adrenal_gland_male_adult_54_years	chr16	20676160	20676218	20676160	-	High_confidence	2	3	10	0.379202	3.321928	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	1.000000
adrenal_gland_male_adult_54_years	chr17	47056719	47056753	47056725	-	RAMPAGE_only	8	8	16	0.606723	3.500000	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.812500
adrenal_gland_male_adult_54_years	chr9	128187868	128187890	128187879	-	RAMPAGE_only	2	3	11	0.417122	3.121928	chr9	128187633	128188001	LINE|L1|L1M5	+	chr9	128180798	128190467	CIZ1|ENST00000474442.1	-	128180798,128185546,128187862,128190328	128180814,128185776,128187934,128190467	0.545455
adrenal_gland_male_adult_54_years	chr15	33194695	33194709	33194708	-	High_confidence	4	4	12	0.455042	2.855389	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.666667
adrenal_gland_male_adult_54_years	chr9	33068832	33068850	33068832	-	RAMPAGE_only	1	2	9	0.341282	2.750000	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.888889
adrenal_gland_male_adult_54_years	chr11	18706988	18707017	18706996	-	RAMPAGE_only	4	4	18	0.682563	3.614369	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18704304	18726180	IGSF22|ENST00000513874.5	-	18704304,18705816,18706913,18707803,18708206,18709386,18710326,18710654,18712081,18713851,18714276,18714499,18715431,18716727,18717930,18718614,18719715,18720063,18720185,18721534,18721909,18724127,18726073	18704538,18706146,18707213,18707996,18708295,18709683,18710455,18710828,18712384,18714148,18714418,18714624,18715716,18717000,18718093,18718728,18719893,18720103,18720285,18721671,18722041,18724269,18726180	0.722222
adrenal_gland_male_adult_54_years	chr15	40389085	40389108	40389085	+	RAMPAGE_only	6	6	21	0.796324	3.630413	chr15	40388942	40389142	SINE|MIR|MIRb	-	chr15	40383254	40392023	KNSTRN|ENST00000559083.1	+	40383254,40389505,40389835,40391492,40391948	40383322,40389611,40389929,40391554,40392023	0.809524
adrenal_gland_male_adult_54_years	chr1	196404216	196404229	196404228	-	RAMPAGE_only	11	11	19	0.720483	3.997670	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225782	196465387	KCNT2|ENST00000498426.5	-	196225782,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196317173,196331155,196333846,196340340,196342078,196373139,196398562,196423049,196425851,196428104,196429576,196465292	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196317269,196331261,196334060,196340570,196342228,196373248,196398671,196423113,196425988,196428269,196429757,196465387	0.631579
adrenal_gland_male_adult_54_years	chr13	113187326	113187344	113187343	-	High_confidence	5	5	25	0.948005	3.886842	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.800000
adrenal_gland_male_adult_54_years	chr14	102191240	102191281	102191264	+	High_confidence	7	7	31	1.175526	3.814372	chr14	102191068	102191286	SINE|MIR|MIRb	-	chr14	102191240	102208848	WDR20|ENST00000555973.1	+	102191240,102194937,102208602	102191371,102195120,102208848	0.741935
adrenal_gland_male_adult_54_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	24	27	62	2.351051	5.052323	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.774194
adrenal_gland_male_adult_54_years	chr14	100897920	100897921	100897920	+	High_confidence	7	8	8	0.303361	3.000000	chr14	100897872	100897994	LINE|L1|L1ME5	+	chr14	100897948	100928615	MEG8|ENST00000553465.5	+	100897948,100898956,100906097,100906935,100910232,100913431,100928098	100898053,100899085,100906163,100907132,100910304,100913521,100928615	0.500000
adrenal_gland_male_adult_54_years	chr2	27910837	27910838	27910837	+	RAMPAGE_only	7	7	10	0.379202	2.947703	chr2	27910851	27911226	LTR|ERVL-MaLR|THE1C	+	chr2	27894619	28025488	BABAM2|ENST00000604932.1	+	27894619,27929831,27987992,28025225	27894684,27929908,27988087,28025488	0.700000
adrenal_gland_male_adult_54_years	chr5	140700445	140700452	140700445	+	High_confidence	1314	1532	2773	105.152670	5.038907	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.979805
adrenal_gland_male_adult_54_years	chr5	151182189	151182257	151182226	-	RAMPAGE_only	2	2	14	0.530883	3.180833	chr5	151182086	151182249	SINE|MIR|MIRc	+	chr5	151181234	151185215	CCDC69|ENST00000519448.1	-	151181234,151184343	151183614,151185215	0.785714
adrenal_gland_male_adult_54_years	chr6	111387800	111387818	111387817	-	RAMPAGE_only	3	3	8	0.303361	2.750000	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.875000
adrenal_gland_male_adult_54_years	chr1	153967486	153967512	153967486	+	High_confidence	25	26	72	2.730253	4.973475	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.805556
adrenal_gland_male_adult_54_years	chr1	225810576	225810607	225810606	+	High_confidence	18	19	46	1.744328	4.542705	chr1	225810574	225810980	LTR|ERV1|LTR7	-	chr1	225810411	225845559	EPHX1|ENST00000614058.4	+	225810411,225828724,225831778,225838653,225839216,225839828,225842365,225844497,225845145	225810615,225828912,225831959,225838881,225839346,225840037,225842474,225844623,225845559	1.000000
adrenal_gland_male_adult_54_years	chr2	200588166	200588177	200588169	+	High_confidence	7	8	23	0.872164	3.879664	chr2	200587906	200588390	LINE|L2|L2a	-	chr2	200588173	200603297	AOX1|ENST00000454629.1	+	200588173,200593145,200595271,200597396,200599619,200602283,200603266	200588270,200593203,200595368,200597505,200599746,200602345,200603297	0.782609
adrenal_gland_male_adult_54_years	chr16	66408512	66408539	66408532	+	High_confidence	3	3	13	0.492962	3.251629	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.846154
adrenal_gland_male_adult_54_years	chr11	65434263	65434286	65434285	+	RAMPAGE_only	10	10	23	0.872164	4.061482	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65423637	65445540	STRG.66558.14	+	65423637,65432397	65432372,65445540	0.956522
adrenal_gland_male_adult_54_years	chr15	80059918	80059933	80059918	+	High_confidence	260	294	680	25.785725	5.612940	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.979412
adrenal_gland_male_adult_54_years	chr7	88277673	88277834	88277833	-	RAMPAGE_only	14	14	132	5.005464	5.990330	chr7	88277593	88277887	SINE|Alu|AluSz6	+	chr7	88270891	88306891	STEAP4|ENST00000380079.8	-	88270891,88280914,88282640,88283813,88306791	88279628,88281079,88283168,88284271,88306891	0.992424
adrenal_gland_male_adult_54_years	chr10	72355126	72355146	72355145	-	High_confidence	10	10	18	0.682563	3.419382	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
adrenal_gland_male_adult_54_years	chr9	104763732	104763756	104763732	+	High_confidence	6	6	20	0.758404	3.784184	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NM_018376.3	+	104763740,104766324,104768862,104770848,104772821,104772996	104764300,104766535,104769021,104770998,104772908,104777764	1.000000
adrenal_gland_male_adult_54_years	chr5	41425935	41425936	41425935	+	High_confidence	19	20	22	0.834244	3.368042	chr5	41425316	41427700	LINE|L1|L1MC1	-	chr5	41426056	41428627	STRG.32798.1	+	41426056,41428404	41426151,41428627	0.954545
adrenal_gland_male_adult_54_years	chr7	30756609	30757234	30757233	+	RAMPAGE_only	139	142	910	34.507368	7.057500	chr7	30757106	30757687	LTR|ERVL|LTR18B	+	chr7	30752134	30757602	INMT|NM_001199219.1	+	30752134,30753733,30755421	30752304,30753938,30757602	0.995604
adrenal_gland_male_adult_54_years	chr20	37298760	37298761	37298760	+	RAMPAGE_only	7	7	7	0.265441	2.521641	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
adrenal_gland_male_adult_54_years	chr5	139364647	139364670	139364647	+	RAMPAGE_only	4	4	10	0.379202	2.921928	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.900000
adrenal_gland_male_adult_54_years	chr14	32075876	32075880	32075879	+	High_confidence	5	6	9	0.341282	2.500000	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076113	32090780	ARHGAP5|ENST00000555814.1	+	32076113,32076457,32090501	32076217,32076657,32090780	0.555556
adrenal_gland_male_adult_54_years	chr12	109053951	109053961	109053956	-	High_confidence	14	23	59	2.237291	4.985064	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.864407
adrenal_gland_male_adult_54_years	chr13	49495740	49495741	49495740	+	High_confidence	5	6	7	0.265441	2.521641	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495664	49518060	PHF11|ENST00000481509.5	+	49495664,49513058,49518017	49496095,49513166,49518060	1.000000
adrenal_gland_male_adult_54_years	chr20	34588453	34588467	34588453	-	RAMPAGE_only	5	5	10	0.379202	2.725481	chr20	34588269	34588423	LINE|L1|L1MA7	-	chr20	34560902	34616093	PIGU|ENST00000438215.1	-	34560902,34575103,34581547,34585436,34588539,34616041	34560979,34575246,34581672,34585480,34588607,34616093	0.900000
adrenal_gland_male_adult_54_years	chr7	2242922	2242923	2242922	+	High_confidence	14	14	14	0.530883	3.521641	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
adrenal_gland_male_adult_54_years	chr15	57451514	57451533	57451528	+	RAMPAGE_only	3	4	14	0.530883	2.985228	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
adrenal_gland_male_adult_54_years	chr7	134527596	134527597	134527596	+	High_confidence	87	92	103	3.905779	5.894653	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.932039
adrenal_gland_male_adult_54_years	chr5	80407084	80407085	80407084	+	High_confidence	16	20	23	0.872164	3.939471	chr5	80406956	80407268	SINE|Alu|AluJr	-	chr5	80408012	80440376	ZFYVE16|NM_001284237.1	+	80408012,80434108,80436755,80439935	80408153,80434217,80439007,80440376	0.782609
adrenal_gland_male_adult_54_years	chr11	3380960	3380961	3380960	+	High_confidence	17	17	18	0.682563	3.852169	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.666667
adrenal_gland_male_adult_54_years	chr4	158174139	158174145	158174139	-	High_confidence	21	23	43	1.630568	4.764591	chr4	158173970	158174146	SINE|MIR|MIRb	+	chr4	158124603	158174143	STRG.30747.1	-	158124603,158130785,158155610,158170465,158172867,158174113	158127614,158131012,158155825,158171599,158172920,158174143	0.906977
adrenal_gland_male_adult_54_years	chr16	70590308	70590335	70590328	+	RAMPAGE_only	25	25	80	3.033615	4.520675	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.775000
adrenal_gland_male_adult_54_years	chr8	29017223	29017224	29017223	-	High_confidence	36	36	48	1.820169	4.695769	chr8	29017103	29017388	LTR|ERVL-MaLR|MLT1G	-	chr8	29015938	29017273	STRG.50885.1	-	29015938	29017273	0.979167
adrenal_gland_male_adult_54_years	chr9	121281818	121281851	121281850	+	RAMPAGE_only	7	8	16	0.606723	3.323231	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.812500
adrenal_gland_male_adult_54_years	chr1	32816866	32816909	32816908	-	High_confidence	6	6	10	0.379202	3.321928	chr1	32816717	32816919	LINE|L2|L2c	+	chr1	32780250	32817244	YARS|ENST00000616261.1	-	32780250,32781047,32781128,32782403,32786361,32786939,32791161,32797762,32806481,32810590,32810910,32817187	32780278,32781127,32781145,32782539,32786447,32787075,32791254,32797843,32806611,32810766,32811057,32817244	0.700000
adrenal_gland_male_adult_54_years	chr12	53251683	53251711	53251683	+	High_confidence	3	3	11	0.417122	3.121928	chr12	53251547	53251701	SINE|MIR|MIRc	-	chr12	53251652	53253752	MFSD5|ENST00000551660.2	+	53251652,53252817	53252035,53253752	0.909091
adrenal_gland_male_adult_54_years	chr2	73640722	73640723	73640722	+	High_confidence	13	13	15	0.568803	3.324863	chr2	73640769	73640932	LTR|ERVL-MaLR|MLT1J2	+	chr2	73640540	73641678	STRG.12699.1	+	73640540	73641678	0.800000
adrenal_gland_male_adult_54_years	chr1	1721622	1721637	1721636	-	High_confidence	6	9	15	0.568803	3.039149	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.933333
adrenal_gland_male_adult_54_years	chr22	37849317	37849333	37849317	-	High_confidence	28	28	84	3.185295	4.998668	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.976190
adrenal_gland_male_adult_54_years	chr8	117932747	117932753	117932752	-	RAMPAGE_only	5	7	10	0.379202	2.725481	chr8	117932667	117932818	DNA|hAT-Charlie|Charlie29a	-	chr8	117822464	118110414	EXT1|ENST00000436216.2	-	117822464,117830229,117831598,117835443,117837107,118110084	117822597,117830349,117831653,117835551,117837201,118110414	0.500000
adrenal_gland_male_adult_54_years	chr13	50715096	50715121	50715096	-	High_confidence	19	19	33	1.251366	4.413910	chr13	50714806	50715412	LTR|ERVL-MaLR|MLT1E2	-	chr13	50710980	50715157	STRG.76234.1	-	50710980,50714877	50713240,50715157	0.969697
adrenal_gland_male_adult_54_years	chr4	1241361	1241362	1241361	-	RAMPAGE_only	8	8	10	0.379202	3.169925	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1248740	CTBP1|ENST00000513420.1	-	1225437,1228198,1238182,1241324,1248660	1225566,1228343,1238337,1241519,1248740	0.800000
adrenal_gland_male_adult_54_years	chr3	50796839	50796840	50796839	+	RAMPAGE_only	6	6	8	0.303361	2.500000	chr3	50796637	50797446	LINE|L1|L1PA13	-	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.875000
adrenal_gland_male_adult_54_years	chr1	30756610	30756643	30756610	-	RAMPAGE_only	4	4	16	0.606723	3.189898	chr1	30756372	30756636	SINE|MIR|MIR	-	chr1	30732468	30757820	LAPTM5|ENST00000294507.3	-	30732468,30735172,30737603,30738939,30739808,30741639,30742455,30757658	30733917,30735265,30737699,30739062,30739937,30741716,30742549,30757820	0.562500
adrenal_gland_male_adult_54_years	chr12	111873	111876	111875	-	High_confidence	7	12	15	0.568803	3.664498	chr12	110820	111833	LTR|ERV1|HERVP71A-int	-	chr12	106523	111850	AC026369.3|ENST00000540226.1	-	106523,111618	106877,111850	0.733333
adrenal_gland_male_adult_54_years	chr4	79492539	79492601	79492539	+	High_confidence	9	9	49	1.858089	4.653089	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.877551
adrenal_gland_male_adult_54_years	chr2	113185065	113185066	113185065	+	High_confidence	11	12	12	0.455042	2.663533	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.916667
adrenal_gland_male_adult_54_years	chr2	55267603	55267620	55267603	-	High_confidence	2	2	8	0.303361	2.521641	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.500000
adrenal_gland_male_adult_54_years	chr18	36122259	36122266	36122259	-	High_confidence	2	2	7	0.265441	2.584963	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.857143
adrenal_gland_male_adult_54_years	chr7	137933016	137933041	137933040	-	High_confidence	4	5	26	0.985925	4.213661	chr7	137932870	137933021	DNA|hAT-Charlie|MER5A1	-	chr7	137874978	137932988	CREB3L2|NM_001318246.1	-	137874978,137882411,137884994,137885402,137901353,137903958,137905701,137908251,137912990,137915836,137928149,137932903	137880551,137882628,137885121,137885502,137901422,137904017,137905848,137908436,137913078,137916012,137928366,137932988	0.923077
adrenal_gland_male_adult_54_years	chr1	100268183	100268281	100268280	+	RAMPAGE_only	9	11	70	2.654413	4.429597	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.957143
adrenal_gland_male_adult_54_years	chrX	7147267	7147288	7147267	+	High_confidence	2	2	6	0.227521	2.584963	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.666667
adrenal_gland_male_adult_54_years	chr20	44532558	44532570	44532569	+	High_confidence	78	84	137	5.195065	6.204278	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.890511
adrenal_gland_male_adult_54_years	chr1	246176493	246176573	246176562	-	High_confidence	45	47	231	8.759563	6.452473	chr1	246176527	246176817	SINE|Alu|AluJb	-	chr1	245863808	246177106	STRG.9428.7	-	245863808,245915529,245927930,245929869,246176464	245863886,245915640,245928033,245929937,246177106	0.636364
adrenal_gland_male_adult_54_years	chr9	95831804	95831814	95831804	-	RAMPAGE_only	2	2	8	0.303361	2.750000	chr9	95831563	95831844	LTR|ERVL|LTR16D	+	chr9	95812313	95875758	STRG.57312.3	-	95812313,95874979	95813922,95875758	0.875000
adrenal_gland_male_adult_54_years	chr14	81427441	81427467	81427461	-	High_confidence	7	7	39	1.478887	4.432294	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.897436
adrenal_gland_male_adult_54_years	chr5	83096150	83096174	83096152	+	RAMPAGE_only	4	7	14	0.530883	3.392747	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	0.785714
adrenal_gland_male_adult_54_years	chr6	125219582	125219594	125219582	+	High_confidence	11	23	33	1.251366	4.248495	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	1.000000
adrenal_gland_male_adult_54_years	chr6	43013319	43013393	43013392	-	High_confidence	10	10	34	1.289286	4.451885	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.970588
adrenal_gland_male_adult_54_years	chr12	113408328	113408349	113408348	-	RAMPAGE_only	4	6	12	0.455042	3.095795	chr12	113408040	113408392	LTR|ERV1|MER4C	+	chr12	113392444	113403888	SDS|ENST00000257549.8	-	113392444,113393891,113397164,113398514,113398706,113399111,113399555,113403767	113393149,113394016,113397392,113398606,113398846,113399151,113399710,113403888	0.833333
adrenal_gland_male_adult_54_years	chr2	227534913	227534933	227534916	+	RAMPAGE_only	11	12	33	1.251366	4.415458	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	1.000000
adrenal_gland_male_adult_54_years	chr8	27907903	27907925	27907924	-	High_confidence	10	10	25	0.948005	3.319080	chr8	27907885	27908122	SINE|MIR|MIRb	-	chr8	27869882	27907562	STRG.50851.2	-	27869882,27879568,27904777,27907147,27907439	27872070,27879766,27904834,27907246,27907562	0.640000
adrenal_gland_male_adult_54_years	chr13	36359732	36359756	36359732	-	RAMPAGE_only	4	4	10	0.379202	3.321928	chr13	36359679	36359903	SINE|MIR|MIR	+	chr13	36301651	36370136	SPART|ENST00000650221.1	-	36301651,36312144,36312318,36314226,36326574,36329361,36331398,36335020,36368873,36370088	36304632,36312235,36312477,36314421,36326698,36329517,36331596,36335832,36368990,36370136	0.900000
adrenal_gland_male_adult_54_years	chr1	184483148	184483222	184483148	+	RAMPAGE_only	9	9	45	1.706408	4.505975	chr1	184483121	184483214	LINE|CR1|L3	-	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.555556
adrenal_gland_male_adult_54_years	chr14	21024350	21024365	21024350	-	High_confidence	3	3	17	0.644643	3.286896	chr14	21024322	21024505	SINE|MIR|MIR3	+	chr14	21021821	21024295	NDRG2|ENST00000554561.5	-	21021821,21022061,21022391,21023240,21024029	21021879,21022182,21022497,21023321,21024295	1.000000
adrenal_gland_male_adult_54_years	chr13	24580610	24580623	24580622	+	High_confidence	4	5	12	0.455042	3.459432	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.750000
adrenal_gland_male_adult_54_years	chr17	82081606	82081705	82081606	-	RAMPAGE_only	52	52	104	3.943699	4.866452	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	0.980769
adrenal_gland_male_adult_54_years	chr5	66690214	66690223	66690222	+	RAMPAGE_only	9	9	17	0.644643	3.750000	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66596360	67169595	MAST4|ENST00000403625.6	+	66596360,66759708,66788669,66899950,67054403,67090161,67095596,67100434,67102535,67104365,67110097,67114086,67118681,67121016,67130209,67131812,67133513,67134522,67136562,67142114,67142420,67144668,67145143,67149388,67152636,67153457,67160455,67162606,67163146	66597018,66759862,66788794,66899982,67054492,67090231,67095675,67100592,67102611,67104575,67110199,67114219,67118749,67121102,67130418,67131951,67133646,67134688,67136664,67142237,67142533,67144796,67145379,67149589,67152866,67153580,67160592,67162788,67169595	0.647059
adrenal_gland_male_adult_54_years	chr5	32403108	32403236	32403115	-	RAMPAGE_only	8	13	109	4.133300	5.791479	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.981651
adrenal_gland_male_adult_54_years	chr2	26299966	26299968	26299967	+	RAMPAGE_only	8	13	17	0.644643	2.866587	chr2	26299720	26300034	LTR|ERV1|HERV15-int	+	chr2	26298962	26305384	STRG.10542.1	+	26298962,26303830	26299029,26305384	0.705882
adrenal_gland_male_adult_54_years	chr3	193614823	193614861	193614823	+	High_confidence	7	8	25	0.948005	3.563074	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.920000
adrenal_gland_male_adult_54_years	chr19	54573001	54573008	54573001	+	High_confidence	4	4	12	0.455042	3.084963	chr19	54572997	54573273	SINE|Alu|AluJr	-	chr19	54572996	54587560	LILRA2|NM_006866.3	+	54572996,54573697,54574075,54574300,54574730,54575255,54575806,54587200	54573435,54573912,54574111,54574582,54575033,54575552,54576109,54587560	1.000000
adrenal_gland_male_adult_54_years	chr12	12927723	12927741	12927733	+	High_confidence	150	151	328	12.437820	7.299101	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.606707
adrenal_gland_male_adult_54_years	chr5	160412454	160412484	160412462	-	RAMPAGE_only	2	3	11	0.417122	3.321928	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160401640	160419161	SLU7|NM_006425.4	-	160401640,160404439,160404808,160405030,160406467,160407475,160407745,160407970,160408328,160408649,160412450,160413455,160413898,160414318,160415124,160419022	160403464,160404556,160404880,160405135,160406629,160407615,160407813,160408068,160408460,160408697,160412519,160413620,160413979,160414472,160415310,160419161	0.909091
adrenal_gland_male_adult_54_years	chr4	141212875	141212897	141212875	-	High_confidence	5	6	27	1.023845	4.056021	chr4	141212711	141212921	LTR|ERVL-MaLR|MSTA	-	chr4	140865570	141212877	RNF150|ENST00000420921.6	-	140865570,140911143,140925976,140947653,140949300,140967622,141053665,141212793	140868379,140911354,140926073,140947736,140949372,140967873,141053731,141212877	0.740741
adrenal_gland_male_adult_54_years	chr1	215423896	215423923	215423896	+	RAMPAGE_only	12	12	42	1.592648	4.319980	chr1	215423943	215424006	SINE|MIR|MIR	+	chr1	215456246	215457905	STRG.8105.1	+	215456246	215457905	0.547619
adrenal_gland_male_adult_54_years	chr12	15001810	15001839	15001825	+	High_confidence	8	8	39	1.478887	4.734512	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.615385
adrenal_gland_male_adult_54_years	chr7	107398355	107398375	107398355	-	RAMPAGE_only	3	3	14	0.530883	3.392747	chr7	107398304	107398642	DNA|hAT-Charlie|MER1B	+	chr7	107201554	107564040	COG5|ENST00000347053.7	-	107201554,107210525,107211098,107230614,107236449,107248395,107258272,107281299,107283570,107298141,107324439,107362032,107362307,107372594,107412501,107527236,107548110,107548277,107554284,107557975,107563802	107203630,107210605,107211225,107230691,107236687,107248499,107258383,107281399,107283732,107298346,107324521,107362110,107362420,107372760,107412632,107527357,107548180,107548332,107554342,107558115,107564040	0.857143
adrenal_gland_male_adult_54_years	chr19	58381361	58381385	58381384	+	High_confidence	5	5	11	0.417122	2.913977	chr19	58381391	58381508	DNA|hAT-Charlie|MER5B	+	chr19	58381220	58382835	STRG.96861.1	+	58381220	58382835	0.909091
adrenal_gland_male_adult_54_years	chrX	103607576	103607580	103607579	+	High_confidence	3	3	7	0.265441	2.521641	chrX	103607556	103607707	SINE|MIR|MIRb	+	chrX	103607450	103609927	TCEAL3|ENST00000372628.5	+	103607450,103608603,103609042	103607716,103608673,103609927	1.000000
adrenal_gland_male_adult_54_years	chr7	40742581	40742612	40742599	+	High_confidence	181	189	643	24.382678	6.696963	chr7	40742340	40742651	DNA|hAT-Charlie|MER1B	-	chr7	40742497	40860631	STRG.45964.3	+	40742497,40749433,40860315	40742692,40749497,40860631	0.839813
adrenal_gland_male_adult_54_years	chr9	39809852	39809859	39809858	-	High_confidence	10	17	28	1.061765	4.100069	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803687	39810058	STRG.55743.2	-	39803687,39809485,39809730	39803859,39809615,39810058	0.785714
adrenal_gland_male_adult_54_years	chr19	48868595	48868631	48868595	-	High_confidence	696	726	3494	132.493123	7.657753	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.988838
adrenal_gland_male_adult_54_years	chr17	41871793	41871800	41871799	-	RAMPAGE_only	8	9	14	0.530883	3.392747	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.928571
adrenal_gland_male_adult_54_years	chr4	4477972	4478014	4478013	-	RAMPAGE_only	3	3	10	0.379202	2.521928	chr4	4477875	4478111	SINE|MIR|MIRb	-	chr4	4425160	4461954	STX18|ENST00000512195.5	-	4425160,4434769,4438393,4457190,4457422,4459371,4461905	4425222,4434858,4438509,4457257,4457500,4459487,4461954	0.800000
adrenal_gland_male_adult_54_years	chr9	128625551	128625605	128625604	+	RAMPAGE_only	10	10	50	1.896009	4.297995	chr9	128625247	128625624	LINE|L2|L2c	-	chr9	128566740	128633335	SPTAN1|ENST00000630866.1	+	128566740,128568771,128574674,128575198,128576822,128577128,128577351,128578109,128579636,128580921,128581781,128582478,128582693,128583076,128583787,128584281,128584720,128585747,128587605,128588808,128591476,128592982,128594174,128598399,128598962,128600079,128603542,128604325,128605033,128605295,128607603,128607851,128608129,128608873,128609121,128609650,128611713,128612108,128613380,128615631,128617639,128617986,128618870,128621157,128624327,128625102,128625768,128626390,128627385,128627924,128629124,128630320,128632126,128632430,128632571,128632807,128633208	128566977,128568897,128574815,128575345,128576956,128577273,128577506,128578245,128579738,128581059,128581892,128582556,128582849,128583281,128583969,128584525,128584843,128585965,128587698,128588943,128591625,128593042,128594373,128598504,128598986,128600115,128603590,128604417,128605178,128605477,128607703,128608049,128608276,128608977,128609284,128609665,128611845,128612246,128613485,128615840,128617760,128618108,128619003,128621256,128624487,128625179,128625978,128626687,128627498,128627942,128629187,128630375,128632323,128632484,128632718,128632955,128633335	0.900000
adrenal_gland_male_adult_54_years	chr12	113334760	113334769	113334768	-	High_confidence	3	3	7	0.265441	2.584963	chr12	113334758	113334823	LINE|L2|L2b	-	chr12	113307799	113334833	SLC8B1|ENST00000553238.5	-	113307799,113310233,113315334,113316525,113316941,113318963,113320580,113320849,113321055,113321195,113332722,113334442	113307912,113310355,113315476,113316656,113317001,113319071,113320686,113320907,113321108,113321348,113332960,113334833	0.714286
adrenal_gland_male_adult_54_years	chr1	234980760	234980791	234980760	-	High_confidence	3	3	22	0.834244	4.011365	chr1	234980615	234980877	SINE|5S-Deu-L2|AmnSINE1	-	chr1	234979669	234980740	STRG.9127.1	-	234979669	234980740	0.545455
adrenal_gland_male_adult_54_years	chr14	100829592	100829605	100829592	+	High_confidence	2	4	12	0.455042	2.663533	chr14	100829596	100829639	LINE|L2|L2b	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.916667
adrenal_gland_male_adult_54_years	chr1	6820052	6820117	6820084	+	RAMPAGE_only	17	19	80	3.033615	4.415923	chr1	6819710	6820142	LINE|L1|L1MC4	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.750000
adrenal_gland_male_adult_54_years	chr3	53168712	53168772	53168745	+	High_confidence	12	13	33	1.251366	4.726410	chr3	53168641	53169049	LINE|L2|L2b	-	chr3	53168723	53192554	STRG.20819.5	+	53168723,53178403,53179576,53181206,53181443,53181700,53183451,53184873,53185603,53185926,53186166,53186603,53187339,53188719,53189057,53189872,53192107	53168811,53178537,53179776,53181267,53181606,53183206,53183581,53184974,53185700,53186027,53186340,53186695,53187402,53188858,53189246,53190001,53192554	0.878788
adrenal_gland_male_adult_54_years	chr11	119046561	119046643	119046604	-	RAMPAGE_only	4	4	16	0.606723	3.202820	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	1.000000
adrenal_gland_male_adult_54_years	chr17	4032411	4032412	4032411	-	High_confidence	7	7	7	0.265441	2.521641	chr17	4032368	4032452	LINE|L2|L2b	+	chr17	4024918	4033359	ZZEF1|ENST00000573606.2	-	4024918,4032125,4032827	4025118,4032258,4033359	0.571429
adrenal_gland_male_adult_54_years	chr2	109247970	109247991	109247990	-	High_confidence	6	7	13	0.492962	3.026987	chr2	109247714	109248111	LTR|ERVL-MaLR|MLT1H2	-	chr2	109242646	109247984	STRG.13621.1	-	109242646,109247791	109243557,109247984	0.923077
adrenal_gland_male_adult_54_years	chr6	122444187	122444632	122444187	-	RAMPAGE_only	83	90	851	32.270077	5.702186	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	0.998825
adrenal_gland_male_adult_54_years	chr8	29017535	29017536	29017535	+	RAMPAGE_only	27	27	29	1.099685	4.236369	chr8	29017457	29017772	LINE|L2|L2	-	chr8	28970435	29051549	STRG.50884.7	+	28970435,28980070,29009071,29018759,29045360,29047357,29048956,29051017	28970519,28980156,29009182,29018913,29045443,29047453,29049048,29051549	0.758621
adrenal_gland_male_adult_54_years	chr1	227142947	227142957	227142956	-	RAMPAGE_only	21	21	38	1.440967	4.574054	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317714	CDC42BPA|ENST00000334218.9	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227059372,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227112670,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227059411,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227112913,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317714	0.973684
adrenal_gland_male_adult_54_years	chr7	21618200	21618244	21618200	+	High_confidence	20	22	40	1.516807	4.634184	chr7	21618177	21618299	DNA|hAT-Blackjack|MER81	+	chr7	21618193	21636078	DNAH11|ENST00000465593.1	+	21618193,21619099,21619955,21635870	21618473,21619222,21620078,21636078	0.650000
adrenal_gland_male_adult_54_years	chr5	109383499	109383501	109383499	-	High_confidence	5	8	11	0.417122	3.321928	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.909091
adrenal_gland_male_adult_54_years	chr9	111570100	111570115	111570100	-	RAMPAGE_only	3	7	12	0.455042	3.095795	chr9	111569760	111570075	LINE|L2|L2a	-	chr9	111562972	111597432	PTGR1|ENST00000374324.5	-	111562972,111570090,111574733,111578795,111583471,111585997,111589263,111592925,111594221,111597316	111564262,111570209,111574842,111578951,111583589,111586165,111589382,111592982,111594267,111597432	0.916667
adrenal_gland_male_adult_54_years	chr19	11196112	11196224	11196126	-	High_confidence	4	4	32	1.213446	4.116729	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.968750
adrenal_gland_male_adult_54_years	chr2	85376881	85376882	85376881	+	High_confidence	6	6	6	0.227521	2.584963	chr2	85376136	85377036	LINE|L1|L1MDa	-	chr2	85376881	85390995	ELMOD3|ENST00000496957.1	+	85376881,85377343,85389750,85390137,85390759	85376916,85377474,85389827,85390265,85390995	0.833333
adrenal_gland_male_adult_54_years	chr19	58306115	58306166	58306115	+	High_confidence	10	10	29	1.099685	3.967720	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58312462	ERVK3-1|ENST00000609864.5	+	58305376,58306087,58312020,58312165	58305445,58306216,58312061,58312462	0.620690
adrenal_gland_male_adult_54_years	chr2	37929500	37929533	37929500	+	High_confidence	2	3	10	0.379202	2.725481	chr2	37929546	37929613	LINE|L1|HAL1M8	+	chr2	37928758	38017744	RMDN2|ENST00000406384.5	+	37928758,37929261,37974039,37975211,37981282,37989540,37991219,37997415,38003990,38004135,38017185	37928936,37929729,37974214,37975314,37981343,37989616,37991297,37997514,38004044,38004216,38017744	0.900000
adrenal_gland_male_adult_54_years	chr15	78456013	78456092	78456028	+	RAMPAGE_only	40	43	176	6.673952	6.128125	chr15	78455788	78456214	LTR|ERVL-MaLR|MLT1F	-	chr15	78465298	78470948	IREB2|ENST00000559427.1	+	78465298,78466270,78470531,78470719	78465388,78466489,78470601,78470948	0.568182
adrenal_gland_male_adult_54_years	chr4	152412528	152412529	152412528	-	High_confidence	9	10	10	0.379202	3.169925	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.900000
adrenal_gland_male_adult_54_years	chr17	75498234	75498258	75498257	+	RAMPAGE_only	4	4	11	0.417122	3.277613	chr17	75498201	75498275	LINE|L2|L2-1_Crp	+	chr17	75496333	75499368	TMEM94|ENST00000577247.5	+	75496333,75497112,75497780,75498174,75498443,75498628,75498911,75499261	75496471,75497198,75497862,75498323,75498538,75498722,75499082,75499368	0.545455
adrenal_gland_male_adult_54_years	chr3	129439736	129439779	129439755	-	High_confidence	3	3	13	0.492962	3.546594	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129431265	129440007	MBD4|ENST00000503197.5	-	129431265,129432555,129433097,129433849,129434061,129436442,129437719,129439729	129431578,129432606,129433247,129433984,129434136,129437308,129437950,129440007	1.000000
adrenal_gland_male_adult_54_years	chr1	32221748	32221803	32221748	+	High_confidence	9	9	50	1.896009	4.753270	chr1	32221596	32221823	SINE|MIR|MIRb	-	chr1	32221583	32231604	EIF3I|NM_003757.3	+	32221583,32222357,32222537,32224033,32224409,32226170,32226402,32228498,32228726,32229134,32230926,32231114	32222032,32222444,32222630,32224121,32224475,32226320,32226530,32228609,32228816,32229208,32231019,32231604	0.960000
adrenal_gland_male_adult_54_years	chr5	150640276	150640348	150640347	+	High_confidence	4	4	24	0.910084	4.061482	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.875000
adrenal_gland_male_adult_54_years	chr4	182905207	182905208	182905207	-	RAMPAGE_only	15	15	17	0.644643	3.616875	chr4	182904639	182905323	LINE|L2|L2c	+	chr4	182890254	182917361	DCTD|ENST00000507543.5	-	182890254,182893030,182894488,182914922,182915460,182916722,182917310	182891477,182893127,182894605,182915058,182915575,182916857,182917361	0.941176
adrenal_gland_male_adult_54_years	chr1	54413492	54413493	54413492	-	RAMPAGE_only	19	19	27	1.023845	3.923856	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54226631	54406419	SSBP3|ENST00000371320.7	-	54226631,54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54257126,54258068,54281437,54401860,54404575,54404857,54405952	54227160,54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257186,54258149,54281527,54401945,54404637,54404930,54406419	0.592593
adrenal_gland_male_adult_54_years	chr16	20735287	20735325	20735324	-	RAMPAGE_only	5	5	18	0.682563	3.734522	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20733663	20741964	THUMPD1|NM_001304550.1	-	20733663,20736859,20737707,20738896,20741508	20736358,20737286,20737956,20739071,20741964	0.944444
adrenal_gland_male_adult_54_years	chr4	98891328	98891330	98891328	-	High_confidence	4	7	11	0.417122	2.921928	chr4	98891322	98891802	LINE|L1|L1MB2	+	chr4	98881009	98890898	EIF4E|ENST00000505194.5	-	98881009,98884921,98887078,98887888,98890786	98881142,98885061,98887192,98887952,98890898	0.909091
adrenal_gland_male_adult_54_years	chr20	36891722	36891735	36891722	-	RAMPAGE_only	5	5	13	0.492962	3.251629	chr20	36891694	36891859	SINE|Alu|AluSx3	-	chr20	36890418	36893066	SAMHD1|ENST00000644250.1	-	36890418,36892618	36891794,36893066	0.923077
adrenal_gland_male_adult_54_years	chr12	104030726	104030727	104030726	+	High_confidence	53	55	72	2.730253	5.411216	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.930556
adrenal_gland_male_adult_54_years	chr5	72139315	72139343	72139342	-	High_confidence	41	46	66	2.502732	4.113245	chr5	72139305	72139426	SINE|MIR|MIR3	+	chr5	72138078	72139140	STRG.33428.1	-	72138078	72139140	0.893939
adrenal_gland_male_adult_54_years	chr2	85905122	85905135	85905128	-	RAMPAGE_only	8	10	21	0.796324	3.784184	chr2	85904827	85905161	SINE|Alu|AluJo	+	chr2	85903180	85903682	STRG.12986.1	-	85903180	85903682	0.666667
adrenal_gland_male_adult_54_years	chr14	35294419	35294446	35294442	+	RAMPAGE_only	3	3	13	0.492962	3.251629	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	0.769231
adrenal_gland_male_adult_54_years	chr7	150325854	150325855	150325854	+	RAMPAGE_only	9	9	10	0.379202	2.947703	chr7	150325771	150325966	DNA|hAT-Charlie|Chap1_Mam	+	chr7	150322638	150332721	STRG.49780.4	+	150322638,150325840,150328634	150323212,150326010,150332721	0.800000
adrenal_gland_male_adult_54_years	chr1	155058722	155058777	155058776	+	High_confidence	4	4	20	0.758404	4.021928	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	1.000000
adrenal_gland_male_adult_54_years	chr1	89134829	89134846	89134829	-	High_confidence	13	13	26	0.985925	4.251629	chr1	89133498	89139088	LINE|L1|L1PA15	+	chr1	89131740	89135001	STRG.4070.1	-	89131740,89133257,89134799	89132403,89133451,89135001	0.923077
adrenal_gland_male_adult_54_years	chr15	97875618	97875650	97875618	-	High_confidence	14	28	61	2.313131	5.258286	chr15	97875560	97876737	LTR|ERV1|LTR12D	+	chr15	97701333	97875634	STRG.84901.2	-	97701333,97705460,97743329,97873952	97704108,97705527,97743483,97875634	1.000000
adrenal_gland_male_adult_54_years	chr11	65887622	65887623	65887622	-	High_confidence	5	5	8	0.303361	2.521641	chr11	65887463	65887575	LINE|L2|L2	-	chr11	65884934	65888436	FIBP|ENST00000532229.1	-	65884934,65885077,65885508,65887599,65887933,65888333	65884998,65885186,65885663,65887726,65888132,65888436	0.875000
adrenal_gland_male_adult_54_years	chr3	48430108	48430145	48430144	-	High_confidence	2	2	6	0.227521	2.584963	chr3	48430133	48430258	SINE|MIR|MIRb	+	chr3	48403853	48430051	PLXNB1|ENST00000296440.10	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48430007	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48430051	0.833333
adrenal_gland_male_adult_54_years	chr14	91462210	91462234	91462210	-	High_confidence	7	8	15	0.568803	3.006239	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.933333
adrenal_gland_male_adult_54_years	chr16	21637001	21637040	21637039	-	RAMPAGE_only	2	2	7	0.265441	2.521641	chr16	21636946	21637915	LTR|ERV1|LTR12D	-	chr16	21629674	21630751	STRG.86055.1	-	21629674	21630751	0.714286
adrenal_gland_male_adult_54_years	chr1	113759894	113759900	113759894	-	High_confidence	3	3	11	0.417122	3.095795	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.636364
adrenal_gland_male_adult_54_years	chr5	151687237	151687252	151687244	-	High_confidence	9	9	43	1.630568	4.879526	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151667473	151687289	STRG.36695.2	-	151667473,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687289	0.744186
adrenal_gland_male_adult_54_years	chr4	79493499	79493516	79493499	+	High_confidence	5	5	11	0.417122	3.459432	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492683	79586342	STRG.27636.3	+	79492683,79493151,79513784,79585147	79492774,79493585,79513902,79586342	0.636364
adrenal_gland_male_adult_54_years	chr3	139344537	139344584	139344547	+	High_confidence	119	121	398	15.092233	5.827462	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.964824
adrenal_gland_male_adult_54_years	chr1	1655395	1655446	1655409	-	RAMPAGE_only	10	20	59	2.237291	5.348579	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.525424
adrenal_gland_male_adult_54_years	chrX	19350019	19350078	19350019	+	RAMPAGE_only	3	3	28	1.061765	4.137538	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19355317	19359025	PDHA1|ENST00000481733.1	+	19355317,19355685,19357651,19358915	19355504,19355757,19357719,19359025	0.642857
adrenal_gland_male_adult_54_years	chr1	35146365	35146412	35146390	-	High_confidence	5	6	15	0.568803	2.815922	chr1	35145875	35146564	LTR|ERV1|HERV3-int	-	chr1	35141527	35146359	STRG.1519.1	-	35141527,35144866,35146298	35143033,35145051,35146359	0.866667
adrenal_gland_male_adult_54_years	chr4	128428000	128428041	128428005	+	High_confidence	35	36	74	2.806094	5.257575	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.837838
adrenal_gland_male_adult_54_years	chr3	33864004	33864091	33864090	+	RAMPAGE_only	6	6	54	2.047690	4.030346	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	1.000000
adrenal_gland_male_adult_54_years	chr1	196715617	196715679	196715644	+	RAMPAGE_only	5	7	29	1.099685	4.280395	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.965517
adrenal_gland_male_adult_54_years	chr17	40191760	40191762	40191760	-	RAMPAGE_only	7	10	14	0.530883	3.546594	chr17	40191739	40191838	DNA|hAT-Tip100|MER91A	-	chr17	40190236	40190749	STRG.89636.1	-	40190236	40190749	0.500000
adrenal_gland_male_adult_54_years	chr19	10379712	10379713	10379712	-	High_confidence	9	9	10	0.379202	2.947703	chr19	10379599	10379809	SINE|MIR|MIRb	+	chr19	10368328	10380510	TYK2|ENST00000530829.1	-	10368328,10369756,10378213,10379614,10380379	10368418,10369877,10378426,10379779,10380510	0.900000
adrenal_gland_male_adult_54_years	chr1	89135035	89135052	89135035	-	High_confidence	6	6	12	0.455042	3.418296	chr1	89133498	89139088	LINE|L1|L1PA15	+	chr1	89131740	89135001	STRG.4070.1	-	89131740,89133257,89134799	89132403,89133451,89135001	1.000000
adrenal_gland_male_adult_54_years	chr12	104280844	104280857	104280846	-	High_confidence	3	5	12	0.455042	3.277613	chr12	104280524	104280952	LTR|ERVL|MLT2D	+	chr12	104262313	104280722	AC089983.1|ENST00000549807.1	-	104262313,104280283	104262575,104280722	0.666667
adrenal_gland_male_adult_54_years	chr1	20685285	20685323	20685297	-	High_confidence	64	88	273	10.352210	6.904938	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20664034	20685283	STRG.958.6	-	20664034,20666213,20670420,20671937,20682652,20684808,20685251	20664762,20666331,20670488,20672196,20682884,20685020,20685283	0.959707
adrenal_gland_male_adult_54_years	chr11	65429815	65429856	65429855	+	RAMPAGE_only	6	10	19	0.720483	3.461320	chr11	65429592	65429862	LINE|L1|L1ME4a	-	chr11	65423637	65445540	STRG.66558.14	+	65423637,65432397	65432372,65445540	0.947368
adrenal_gland_male_adult_54_years	chr17	35432496	35432514	35432499	-	High_confidence	6	6	17	0.644643	3.280639	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.941176
adrenal_gland_male_adult_54_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	7	7	7	0.265441	2.521641	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.714286
adrenal_gland_male_adult_54_years	chr1	226939265	226939275	226939274	+	High_confidence	6	7	14	0.530883	3.180833	chr1	226939237	226939309	DNA|hAT-Charlie|Charlie18a	-	chr1	226940236	226987545	ADCK3|NM_020247.4	+	226940236,226961376,226964999,226965670,226977448,226982026,226982677,226982893,226983551,226983760,226984093,226984547,226984875,226985253,226986452	226940399,226961562,226965410,226965737,226977523,226982149,226982763,226983034,226983633,226983854,226984235,226984655,226984941,226985340,226987545	0.714286
adrenal_gland_male_adult_54_years	chr3	114693531	114693563	114693531	-	RAMPAGE_only	3	3	13	0.492962	2.918296	chr3	114693457	114693551	SINE|MIR|MIR	+	chr3	114338683	114758940	ZBTB20|ENST00000464560.5	-	114338683,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114758940	0.846154
adrenal_gland_male_adult_54_years	chr5	64788990	64789019	64789018	+	RAMPAGE_only	2	2	6	0.227521	2.584963	chr5	64789056	64789153	LINE|L2|L2b	+	chr5	64800244	64804907	CWC27|ENST00000506168.1	+	64800244,64801301,64804228	64800327,64801332,64804907	0.500000
adrenal_gland_male_adult_54_years	chr5	75512945	75512946	75512945	+	High_confidence	8	8	8	0.303361	2.750000	chr5	75512845	75513016	SINE|Alu|AluSx1	+	chr5	75512068	75573837	POLK|ENST00000514296.5	+	75512068,75534827,75547009,75552471,75569339,75573737	75512946,75534964,75547157,75552591,75569492,75573837	0.875000
adrenal_gland_male_adult_54_years	chr22	37755641	37755658	37755641	+	High_confidence	4	6	12	0.455042	3.022055	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37754881	37774140	STRG.101214.3	+	37754881,37755100,37755549,37757612,37759153,37765669,37768073,37769027,37769261,37771649,37772600	37754984,37755190,37755659,37758138,37759264,37765817,37768176,37769187,37769375,37771736,37774140	0.916667
adrenal_gland_male_adult_54_years	chr3	53495124	53495207	53495124	+	High_confidence	7	7	36	1.365127	4.171861	chr3	53495032	53495170	LINE|L2|L2a	+	chr3	53495158	53650957	CACNA1D|ENST00000636480.1	+	53495158,53497151,53501614,53650778	53495233,53497461,53501720,53650957	0.861111
adrenal_gland_male_adult_54_years	chr8	18010636	18010666	18010665	+	RAMPAGE_only	4	4	22	0.834244	4.277613	chr8	18010700	18010985	SINE|Alu|AluSg	+	chr8	18013827	18027758	PCM1|ENST00000519802.5	+	18013827,18014583,18025360,18025543,18027636	18014036,18014840,18025453,18025658,18027758	0.545455
adrenal_gland_male_adult_54_years	chr3	31004509	31004528	31004516	-	RAMPAGE_only	3	3	9	0.341282	2.503258	chr3	31004363	31004856	LTR|ERVL-MaLR|MLT1G1	-	chr3	30726199	30894765	GADL1|ENST00000282538.9	-	30726199,30778178,30786354,30800888,30833852,30834216,30838996,30844209,30844386,30849995,30850834,30854698,30857014,30861592,30894577	30728415,30778268,30786406,30801088,30833934,30834281,30839113,30844264,30844466,30850111,30850941,30854789,30857141,30861765,30894765	0.777778
adrenal_gland_male_adult_54_years	chr14	94109773	94109778	94109773	+	High_confidence	2	2	7	0.265441	2.521641	chr14	94109433	94109807	LTR|ERV1|MER65B	-	chr14	94110732	94116698	IFI27|ENST00000616764.4	+	94110732,94110925,94111624,94114850,94115780,94116441	94110797,94110978,94111773,94114880,94115942,94116698	1.000000
adrenal_gland_male_adult_54_years	chr2	187461472	187461530	187461529	+	High_confidence	5	5	18	0.682563	4.058814	chr2	187461411	187462268	LTR|ERV1|LTR1A2	+	chr2	187461758	187499820	STRG.16412.1	+	187461758,187499505	187462016,187499820	0.722222
adrenal_gland_male_adult_54_years	chr12	53464815	53464837	53464815	+	RAMPAGE_only	7	7	15	0.568803	3.664498	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.866667
adrenal_gland_male_adult_54_years	chr4	78971798	78971820	78971798	+	High_confidence	2	2	12	0.455042	3.251629	chr4	78971775	78972175	LINE|L1|L1MA7	-	chr4	78971747	79308799	LINC01088|NR_038342.1	+	78971747,78972999,79086095,79195835,79306690,79308272	78971876,78973052,79086262,79195932,79306728,79308799	0.833333
adrenal_gland_male_adult_54_years	chr11	123469400	123469403	123469402	+	RAMPAGE_only	22	26	37	1.403047	3.832595	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123480737	123594838	GRAMD1B|ENST00000633087.1	+	123480737,123577366,123584311,123594081,123594734	123480893,123577577,123584332,123594166,123594838	0.756757
adrenal_gland_male_adult_54_years	chr11	65367381	65367438	65367437	+	High_confidence	18	19	47	1.782249	4.711831	chr11	65367362	65367667	SINE|Alu|AluY	-	chr11	65367437	65375299	AP000944.1|ENST00000533886.1	+	65367437,65367926,65375230	65367815,65368043,65375299	0.808511
adrenal_gland_male_adult_54_years	chr10	59707194	59707207	59707194	-	RAMPAGE_only	14	15	41	1.554728	4.464157	chr10	59707053	59707198	SINE|Alu|AluJb	+	chr10	59650763	59709891	SLC16A9|NM_001323981.1	-	59650763,59653674,59664226,59672769,59684095,59707105,59709478	59652950,59654589,59664322,59672913,59684327,59707188,59709891	0.926829
adrenal_gland_male_adult_54_years	chr2	27978248	27978252	27978251	+	High_confidence	951	1034	1661	62.985426	7.568343	chr2	27978041	27978454	LTR|ERVL-MaLR|MSTB	+	chr2	27978156	28338901	STRG.10692.6	+	27978156,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28338449	27978374,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28338901	0.865744
adrenal_gland_male_adult_54_years	chr17	59729715	59729734	59729715	+	High_confidence	2	2	8	0.303361	2.521641	chr17	59729673	59729983	SINE|Alu|AluSq2	-	chr17	59729714	59737517	VMP1|ENST00000587259.5	+	59729714,59731420,59735337,59737452	59730017,59731522,59735473,59737517	0.750000
adrenal_gland_male_adult_54_years	chr8	129970956	129970961	129970956	-	High_confidence	3	4	8	0.303361	2.807355	chr8	129970879	129971079	SINE|MIR|MIR	+	chr8	129855582	129970990	FAM49B|ENST00000519142.5	-	129855582,129862228,129871374,129879388,129903311,129904498,129912469,129970942	129855747,129862334,129871496,129879471,129903350,129904585,129912515,129970990	0.625000
adrenal_gland_male_adult_54_years	chr7	6590236	6590300	6590269	+	High_confidence	4	4	32	1.213446	3.977917	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.968750
adrenal_gland_male_adult_54_years	chr10	35482595	35482633	35482607	+	RAMPAGE_only	2	2	14	0.530883	3.180833	chr10	35482549	35482749	DNA|hAT-Charlie|MER102b	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.785714
adrenal_gland_male_adult_54_years	chr16	84158977	84159005	84158992	+	High_confidence	2	3	10	0.379202	2.947703	chr16	84158730	84159030	SINE|Alu|AluSz	-	chr16	84159039	84177920	DNAAF1|NM_001318756.1	+	84159039,84159674,84165782,84169858,84172259,84174668,84175932,84177728	84159211,84159796,84165997,84170356,84172375,84174722,84176299,84177920	0.900000
adrenal_gland_male_adult_54_years	chr15	41280557	41280636	41280579	+	RAMPAGE_only	18	24	71	2.692333	4.313440	chr15	41280505	41280810	SINE|Alu|AluSx3	-	chr15	41231238	41281887	CHP1|NM_007236.4	+	41231238,41243666,41256909,41262755,41270556,41278766,41279335	41231449,41243739,41256990,41262883,41270618,41278889,41281887	1.000000
adrenal_gland_male_adult_54_years	chr7	128622497	128622529	128622528	+	RAMPAGE_only	4	7	13	0.492962	3.180833	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128591602	128652334	STRG.48788.4	+	128591602,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294,128629371,128631679,128638773,128642216,128648791,128651037,128651188	128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626530,128629458,128631869,128641379,128642281,128648986,128651095,128652334	0.923077
adrenal_gland_male_adult_54_years	chr8	105188775	105188781	105188775	-	High_confidence	2	2	7	0.265441	2.521641	chr8	105188346	105188933	LINE|L1|L1M3d	+	chr8	105142859	105188606	AC021546.1|ENST00000518927.1	-	105142859,105167417,105188535	105143747,105167489,105188606	0.857143
adrenal_gland_male_adult_54_years	chr17	3890731	3890743	3890731	-	High_confidence	2	2	7	0.265441	2.584963	chr17	3890665	3890852	LINE|L2|L2b	+	chr17	3860314	3890743	CAMKK1|NM_172206.1	-	3860314,3865907,3869486,3869800,3872553,3873408,3876222,3880345,3881626,3882527,3883041,3883428,3883883,3884379,3885327,3890692	3862283,3866011,3869615,3869888,3872627,3873462,3876422,3880434,3881648,3882564,3883175,3883480,3883937,3884427,3885730,3890743	0.714286
adrenal_gland_male_adult_54_years	chr1	162781247	162781309	162781286	+	RAMPAGE_only	10	10	61	2.313131	4.921062	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.934426
adrenal_gland_male_adult_54_years	chr5	139011485	139011486	139011485	-	RAMPAGE_only	6	6	6	0.227521	2.584963	chr5	139005423	139011486	LINE|L1|L1PA2	-	chr5	138946994	138953433	SIL1|ENST00000515008.1	-	138946994,138951170,138951787,138953331	138947473,138951335,138951884,138953433	1.000000
adrenal_gland_male_adult_54_years	chr11	65440596	65440738	65440702	+	RAMPAGE_only	9	9	78	2.957774	4.654628	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65423637	65445540	STRG.66558.14	+	65423637,65432397	65432372,65445540	1.000000
adrenal_gland_male_adult_54_years	chr9	13386132	13386133	13386132	+	RAMPAGE_only	27	28	38	1.440967	4.448861	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.868421
adrenal_gland_male_adult_54_years	chr13	27445105	27445120	27445107	-	RAMPAGE_only	4	6	17	0.644643	3.750000	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.941176
adrenal_gland_male_adult_54_years	chr5	140633644	140633673	140633644	-	High_confidence	8	8	28	1.061765	4.310443	chr5	140633624	140633721	LINE|CR1|L3	+	chr5	140632343	140633651	CD14|ENST00000498971.6	-	140632343,140633068,140633530	140632980,140633192,140633651	0.678571
adrenal_gland_male_adult_54_years	chr11	108224074	108224075	108224074	+	High_confidence	9	9	12	0.455042	3.027169	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.500000
adrenal_gland_male_adult_54_years	chr3	128651521	128651529	128651521	-	High_confidence	4	4	11	0.417122	2.921928	chr3	128651508	128651582	LINE|L1|L1MC4a	+	chr3	128632120	128651529	RPN1|ENST00000495462.5	-	128632120,128637798,128644918,128651372	128632157,128638105,128644983,128651529	0.818182
adrenal_gland_male_adult_54_years	chr6	2990740	2990755	2990748	-	High_confidence	38	42	125	4.740023	5.069674	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989708	2990759	STRG.37772.1	-	2989708,2990670	2990011,2990759	0.856000
adrenal_gland_male_adult_54_years	chr3	197913277	197913300	197913295	-	High_confidence	48	51	98	3.716178	5.834555	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.969388
adrenal_gland_male_adult_54_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	13	14	19	0.720483	3.892407	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.947368
adrenal_gland_male_adult_54_years	chr3	9986887	9986888	9986887	+	High_confidence	7	7	10	0.379202	3.121928	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.600000
adrenal_gland_male_adult_54_years	chr3	51973635	51973693	51973648	+	RAMPAGE_only	14	14	119	4.512502	5.703653	chr3	51973505	51973664	SINE|Alu|AluJb	-	chr3	51975025	51981200	ABHD14A|NM_015407.4	+	51975025,51977870,51978258,51980392,51980835	51975204,51978082,51978374,51980628,51981200	0.915966
adrenal_gland_male_adult_54_years	chr4	53015527	53015556	53015546	-	RAMPAGE_only	3	5	14	0.530883	3.039149	chr4	53015303	53015519	LINE|L2|L2b	-	chr4	52873787	53366061	SCFD2|ENST00000388940.8	-	52873787,52885746,52920724,53145332,53273825,53313635,53352597,53365103	52874061,52885866,52920870,53145582,53274001,53313763,53352766,53366061	0.928571
adrenal_gland_male_adult_54_years	chr5	42175253	42175291	42175290	-	High_confidence	9	9	28	1.061765	3.824863	chr5	42175074	42175255	LTR|ERVL-MaLR|MSTC	-	chr5	42155832	42175345	LOC101926960|NR_104636.1	-	42155832,42159026,42159336,42175152	42157411,42159053,42159446,42175345	0.785714
adrenal_gland_male_adult_54_years	chr2	174410027	174410040	174410039	+	High_confidence	5	6	12	0.455042	2.688722	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410036	174428859	SCRN3|ENST00000548921.5	+	174410036,174422884,174424474,174427712	174410225,174423047,174424649,174428859	0.750000
adrenal_gland_male_adult_54_years	chr5	128082251	128082279	128082251	-	High_confidence	3	4	16	0.606723	3.750000	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	128024026	128082960	LINC01184|ENST00000508878.5	-	128024026,128061143,128076946,128081972,128082734	128024298,128061244,128077093,128082194,128082960	0.687500
adrenal_gland_male_adult_54_years	chr10	89888015	89888047	89888037	+	RAMPAGE_only	16	16	35	1.327206	4.194388	chr10	89888002	89888814	LTR|ERV1|LTR8B	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.542857
adrenal_gland_male_adult_54_years	chr2	202519016	202519037	202519036	+	RAMPAGE_only	2	2	7	0.265441	2.584963	chr2	202519079	202519382	SINE|Alu|AluSz6	+	chr2	202464807	202560341	BMPR2|ENST00000638587.1	+	202464807,202467052,202467518,202513718,202514887,202518821,202520086,202530793,202532584,202542310,202552715,202555251,202559695	202464983,202467054,202467689,202513829,202514979,202519052,202520201,202530954,202532732,202542447,202552888,202556531,202560341	0.857143
adrenal_gland_male_adult_54_years	chr2	109247929	109247930	109247929	-	High_confidence	9	9	12	0.455042	3.027169	chr2	109247714	109248111	LTR|ERVL-MaLR|MLT1H2	-	chr2	109242646	109247984	STRG.13621.1	-	109242646,109247791	109243557,109247984	0.750000
adrenal_gland_male_adult_54_years	chr4	39544055	39544056	39544055	-	High_confidence	483	513	579	21.955787	5.790301	chr4	39543948	39544368	LTR|ERVK|LTR3B	-	chr4	39539323	39544365	STRG.26576.1	-	39539323,39543823	39539775,39544365	0.939551
adrenal_gland_male_adult_54_years	chr3	52615417	52615438	52615437	-	High_confidence	3	3	12	0.455042	3.188722	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	1.000000
adrenal_gland_male_adult_54_years	chr13	43055454	43055480	43055454	+	RAMPAGE_only	5	5	19	0.720483	3.725481	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.789474
adrenal_gland_male_adult_54_years	chr9	114177931	114177942	114177931	+	RAMPAGE_only	5	5	15	0.568803	3.521641	chr9	114177859	114178092	LINE|L2|L2c	-	chr9	114168607	114311548	COL27A1|ENST00000494090.6	+	114168607,114178290,114183021,114195958,114205101,114205758,114206251,114209674,114210981,114219790,114222222,114231078,114231821,114235598,114236980,114237661,114240219,114240433,114242186,114243506,114245865,114250614,114252592,114252878,114258540,114264354,114264923,114265065,114265421,114266564,114267503,114269240,114270727,114275660,114282276,114282456,114283708,114284723,114288454,114288701,114288913,114289241,114290057,114290223,114290809,114292102,114300069,114300624,114301071,114301283,114301444,114301681,114302081,114304607,114306519,114307668,114309259,114310548	114169463,114178344,114183075,114196012,114205146,114205812,114206296,114209728,114211026,114219844,114222267,114231132,114231858,114235652,114237034,114237715,114240273,114240487,114242231,114243560,114245910,114250668,114252653,114252932,114258594,114264408,114264968,114265110,114265475,114266618,114267557,114269294,114270781,114275768,114282330,114282564,114283762,114284777,114288511,114288755,114288967,114289295,114290111,114290331,114290917,114292210,114300123,114300687,114301125,114301319,114301462,114301717,114302108,114304673,114306688,114307778,114309478,114311548	0.866667
adrenal_gland_male_adult_54_years	chr20	18794063	18794086	18794085	+	High_confidence	26	26	66	2.502732	4.123722	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.984848
adrenal_gland_male_adult_54_years	chr14	75134051	75134092	75134091	-	RAMPAGE_only	4	4	12	0.455042	3.022055	chr14	75133229	75134244	LINE|L1|L1ME1	+	chr14	75131469	75176631	TMED10|ENST00000303575.8	-	75131469,75135759,75147663,75152031,75176354	75135006,75135886,75147737,75152143,75176631	1.000000
adrenal_gland_male_adult_54_years	chr2	231270673	231270706	231270673	+	High_confidence	17	26	76	2.881934	5.432294	chr2	231270419	231270687	LINE|L1|HAL1	-	chr2	231270742	231291435	ARMC9|ENST00000481520.1	+	231270742,231272954,231276635,231278381,231282058,231291352	231271072,231273078,231276775,231278458,231282133,231291435	0.842105
adrenal_gland_male_adult_54_years	chr2	3592789	3592804	3592789	+	RAMPAGE_only	3	4	9	0.341282	3.000000	chr2	3592540	3592841	SINE|Alu|AluJb	-	chr2	3594831	3644644	COLEC11|ENST00000382062.6	+	3594831,3604314,3613310,3640277,3643443,3643726	3595168,3604470,3613382,3640331,3643539,3644644	0.777778
adrenal_gland_male_adult_54_years	chr8	123025815	123025816	123025815	-	High_confidence	8	8	9	0.341282	2.750000	chr8	123025804	123025900	SINE|MIR|MIRc	-	chr8	123015445	123025772	DERL1|ENST00000523036.1	-	123015445,123019194,123021446,123022683,123023712,123024985,123025722	123015585,123019305,123021499,123022779,123023739,123025050,123025772	0.666667
adrenal_gland_male_adult_54_years	chr4	73144752	73144776	73144752	-	RAMPAGE_only	3	3	10	0.379202	2.725481	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.900000
adrenal_gland_male_adult_54_years	chr3	143824523	143824567	143824540	-	RAMPAGE_only	5	5	29	1.099685	4.513153	chr3	143824344	143824714	LINE|L2|L2a	+	chr3	143265221	143848531	SLC9A9|ENST00000316549.10	-	143265221,143268874,143363483,143382059,143467036,143493652,143495334,143552361,143574087,143578584,143652254,143693191,143795000,143796825,143832018,143848147	143266929,143268980,143363563,143382114,143467190,143493764,143495448,143552450,143574193,143578723,143652360,143693307,143795077,143796903,143832221,143848531	0.689655
adrenal_gland_male_adult_54_years	chr20	44685318	44685335	44685329	-	RAMPAGE_only	8	8	40	1.516807	4.584184	chr20	44685068	44685316	SINE|MIR|MIRb	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.825000
adrenal_gland_male_adult_54_years	chr11	78532942	78532951	78532950	+	High_confidence	6	7	13	0.492962	3.084963	chr11	78532498	78533068	LTR|ERV1|LTR24C	+	chr11	78533175	78558565	AP003110.1|ENST00000526976.1	+	78533175,78546508,78555214,78558263	78533303,78546640,78555369,78558565	0.923077
adrenal_gland_male_adult_54_years	chr19	45099722	45099740	45099722	+	High_confidence	4	4	12	0.455042	3.251629	chr19	45099644	45099739	LINE|L2|L2c	+	chr19	45100063	45141386	PPP1R37|ENST00000544897.5	+	45100063,45138513,45140235,45140505,45141321	45100280,45138611,45140281,45140606,45141386	0.666667
adrenal_gland_male_adult_54_years	chr13	106561950	106561951	106561950	-	High_confidence	46	46	47	1.782249	5.099436	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.808511
adrenal_gland_male_adult_54_years	chr7	11194708	11194726	11194708	+	RAMPAGE_only	5	5	12	0.455042	3.277613	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.500000
adrenal_gland_male_adult_54_years	chr7	134711498	134711504	134711503	+	RAMPAGE_only	3	3	8	0.303361	2.807355	chr7	134711275	134711628	LTR|ERVL|MLT2D	+	chr7	134744251	134968402	CALD1|ENST00000417172.5	+	134744251,134843883,134867692,134928753,134932987,134941091,134947507,134950373,134958068,134958208,134959973,134960532,134965305,134968339	134744363,134843971,134867804,134928900,134933390,134941237,134947769,134950514,134958112,134958290,134960111,134960628,134965386,134968402	0.875000
adrenal_gland_male_adult_54_years	chr9	19126420	19126424	19126420	-	RAMPAGE_only	3	3	9	0.341282	2.500000	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19115769	19127576	PLIN2|ENST00000276914.6	-	19115769,19118320,19119649,19120879,19123564,19126113,19126396,19127418	19116649,19118455,19119831,19121165,19123647,19126309,19126448,19127576	0.888889
adrenal_gland_male_adult_54_years	chr1	51403428	51403469	51403428	-	RAMPAGE_only	47	50	130	4.929624	4.628171	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.953846
adrenal_gland_male_adult_54_years	chr7	154928480	154928504	154928503	+	High_confidence	64	66	115	4.360821	5.298562	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.973913
adrenal_gland_male_adult_54_years	chrX	5726116	5726194	5726116	-	High_confidence	73	86	352	13.347905	5.707504	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5718858	5726175	STRG.101864.1	-	5718858,5725929	5719872,5726175	0.940341
adrenal_gland_male_adult_54_years	chr5	140655854	140655987	140655986	+	RAMPAGE_only	22	37	253	9.593807	5.596986	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.996047
adrenal_gland_male_adult_54_years	chr5	170267210	170267290	170267210	-	High_confidence	41	45	292	11.072694	6.503288	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.982877
adrenal_gland_male_adult_54_years	chr12	79455424	79455443	79455442	-	High_confidence	3	3	8	0.303361	2.521641	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.625000
adrenal_gland_male_adult_54_years	chr9	35755616	35755644	35755636	+	RAMPAGE_only	3	3	10	0.379202	3.121928	chr9	35755462	35755813	DNA|hAT-Charlie|MER1B	-	chr9	35749290	35758575	STRG.55622.3	+	35749290,35749736,35750242,35750657,35750839,35751265,35751955,35752650	35749408,35749871,35750379,35750741,35750989,35751754,35752145,35758575	1.000000
adrenal_gland_male_adult_54_years	chr5	95509594	95509600	95509599	-	RAMPAGE_only	6	8	11	0.417122	3.027169	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	1.000000
adrenal_gland_male_adult_54_years	chr12	50924078	50924080	50924078	+	High_confidence	12	24	24	0.910084	4.349649	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	0.958333
adrenal_gland_male_adult_54_years	chr6	31587201	31587275	31587201	+	High_confidence	65	70	308	11.679417	5.585573	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000376093.6	+	31587199,31587640,31587943,31588496	31587318,31587733,31587966,31588909	0.993506
adrenal_gland_male_adult_54_years	chr3	46895736	46895752	46895739	+	RAMPAGE_only	3	3	17	0.644643	3.500000	chr3	46895551	46895745	SINE|MIR|MIRc	-	chr3	46892720	46898734	PTH1R|ENST00000490109.1	+	46892720,46893906,46895734,46897854,46898073,46898377,46898661	46892815,46894009,46895869,46897965,46898192,46898472,46898734	0.588235
adrenal_gland_male_adult_54_years	chr12	10363706	10363707	10363706	+	High_confidence	4	7	7	0.265441	2.521641	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.571429
adrenal_gland_male_adult_54_years	chr1	188915363	188915378	188915363	-	High_confidence	3	4	9	0.341282	2.725481	chr1	188914961	188915594	LTR|ERV1|MER67C	-	chr1	188913819	188914954	STRG.6994.1	-	188913819	188914954	0.666667
adrenal_gland_male_adult_54_years	chr16	21637128	21637141	21637128	-	RAMPAGE_only	24	24	53	2.009770	4.763317	chr16	21636946	21637915	LTR|ERV1|LTR12D	-	chr16	21629674	21630751	STRG.86055.1	-	21629674	21630751	0.679245
adrenal_gland_male_adult_54_years	chr3	52644703	52644710	52644705	-	RAMPAGE_only	3	6	10	0.379202	2.725481	chr3	52644388	52644682	SINE|Alu|AluSc	-	chr3	52586429	52678567	PBRM1|ENST00000446103.5	-	52586429,52587352,52589069,52603520,52609312,52615350,52617261,52624896,52627272,52628893,52634601,52641953,52643247,52644703,52648343,52651741,52658198,52662132,52668497,52678499	52586688,52587510,52589252,52603732,52609955,52615456,52617538,52624941,52627370,52629035,52634815,52642045,52643343,52644789,52648442,52651810,52658315,52662276,52668645,52678567	0.900000
adrenal_gland_male_adult_54_years	chr2	232890998	232891016	232891015	-	High_confidence	8	12	41	1.554728	4.881704	chr2	232890857	232891264	LINE|L2|L2c	+	chr2	232882228	232890980	NGEF|ENST00000424488.5	-	232882228,232883310,232883980,232885279,232888032,232890933	232882265,232883466,232884144,232885369,232888107,232890980	0.609756
adrenal_gland_male_adult_54_years	chr6	79998979	79998982	79998981	+	RAMPAGE_only	10	17	17	0.644643	3.263933	chr6	79997894	79999302	LINE|L1|L1MEc	-	chr6	80003886	80042527	TTK|ENST00000509894.5	+	80003886,80005841,80007808,80008385,80010813,80011433,80011728,80011885,80013278,80014462,80022323,80026380,80027884,80031466,80034984,80035265,80036474,80037966,80039695,80040195,80040605,80042118	80004713,80005982,80008031,80008492,80010957,80011548,80011801,80011980,80013366,80014586,80022472,80026514,80028011,80031559,80035142,80035417,80036599,80038047,80039872,80040280,80040703,80042527	1.000000
adrenal_gland_male_adult_54_years	chr6	79631273	79631329	79631328	+	High_confidence	46	52	216	8.190760	6.173783	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.981481
adrenal_gland_male_adult_54_years	chr7	137254958	137254969	137254968	-	RAMPAGE_only	8	8	13	0.492962	2.719295	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	1.000000
adrenal_gland_male_adult_54_years	chr19	48637343	48637379	48637367	-	High_confidence	40	41	120	4.550422	5.531659	chr19	48637310	48637367	LINE|L1|X9_LINE	+	chr19	48633085	48637363	DBP|ENST00000601104.1	-	48633085,48635579,48636855	48633655,48635990,48637363	0.933333
adrenal_gland_male_adult_54_years	chr6	107872865	107872870	107872865	-	RAMPAGE_only	3	3	9	0.341282	3.000000	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.888889
adrenal_gland_male_adult_54_years	chr4	158167344	158167360	158167344	-	High_confidence	5	5	12	0.455042	2.918296	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158127544	158167212	FAM198B|ENST00000592586.1	-	158127544,158130785,158155610,158167176	158127614,158131012,158155825,158167212	0.500000
adrenal_gland_male_adult_54_years	chrX	103577210	103577212	103577211	+	High_confidence	9	20	20	0.758404	3.984184	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
adrenal_gland_male_adult_54_years	chr8	18063185	18063218	18063185	-	High_confidence	5	6	24	0.910084	4.004886	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.916667
adrenal_gland_male_adult_54_years	chr7	76109077	76109092	76109091	-	High_confidence	21	22	49	1.858089	4.709311	chr7	76108929	76109272	LTR|ERV1|MER61A	-	chr7	76090430	76108779	GTF2IP7|ENST00000434037.1	-	76090430,76093296,76099439,76099897,76108230,76108434	76092166,76093401,76099514,76099956,76108309,76108779	0.530612
adrenal_gland_male_adult_54_years	chr2	159231728	159231748	159231747	+	RAMPAGE_only	4	4	11	0.417122	2.732159	chr2	159231677	159231761	DNA|TcMar-Mariner|MARNA	-	chr2	159224392	159232659	TANC1|ENST00000496406.1	+	159224392,159229577	159228896,159232659	0.909091
adrenal_gland_male_adult_54_years	chr16	30354611	30354680	30354679	-	High_confidence	10	11	32	1.213446	4.502583	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.968750
adrenal_gland_male_adult_54_years	chr19	47227183	47227214	47227213	-	High_confidence	3	4	13	0.492962	2.792481	chr19	47227045	47227213	SINE|MIR|MIR1_Amn	-	chr19	47221644	47227189	BBC3|ENST00000598636.1	-	47221644,47226563	47221918,47227189	0.923077
adrenal_gland_male_adult_54_years	chr3	183683134	183683208	183683144	+	RAMPAGE_only	7	7	31	1.175526	3.676441	chr3	183682928	183683231	SINE|Alu|AluSx3	-	chr3	183635634	183684477	STRG.24709.4	+	183635634,183643479,183650295,183663457,183664920,183671033,183672295,183679085	183636311,183643542,183651276,183663642,183665039,183671222,183672484,183684477	0.935484
adrenal_gland_male_adult_54_years	chr9	37492706	37492707	37492706	+	RAMPAGE_only	7	7	8	0.303361	2.807355	chr9	37492736	37492850	SINE|MIR|MIR3	+	chr9	37486152	37503697	POLR1E|ENST00000377792.3	+	37486152,37487862,37489314,37492656,37493558,37495168,37495889,37498090,37500839,37501712,37503042	37486806,37487939,37489400,37492715,37493703,37495276,37495986,37498224,37500921,37501844,37503697	0.875000
adrenal_gland_male_adult_54_years	chr8	133458995	133459046	133459045	-	RAMPAGE_only	4	4	20	0.758404	3.321104	chr8	133458873	133459194	SINE|Alu|AluJo	-	chr8	133454852	133571925	ST3GAL1|ENST00000521180.5	-	133454852,133461874,133463413,133464777,133465893,133475718,133499134,133545773,133571692	133459937,133461994,133463459,133464957,133466090,133476600,133499189,133545926,133571925	0.950000
adrenal_gland_male_adult_54_years	chr1	209651135	209651136	209651135	-	High_confidence	6	6	9	0.341282	3.169925	chr1	209651125	209651277	SINE|MIR|MIR3	+	chr1	209614869	209651334	LAMB3|NM_001017402.1	-	209614869,209616470,209617409,209617906,209618451,209622535,209622981,209623504,209623839,209625647,209626866,209627382,209628034,209629736,209630614,209632582,209633069,209634446,209637907,209638533,209649963,209650916	209615407,209616624,209617586,209618048,209618659,209622680,209623179,209623725,209624000,209626026,209626978,209627579,209628190,209629925,209630735,209632776,209633133,209634638,209637981,209638648,209650118,209651334	1.000000
adrenal_gland_male_adult_54_years	chr1	183590905	183590926	183590910	-	High_confidence	4	4	17	0.644643	3.292770	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.941176
adrenal_gland_male_adult_54_years	chr12	7502503	7502544	7502543	-	High_confidence	28	28	105	3.981619	5.804907	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.980952
adrenal_gland_male_adult_54_years	chr19	47751067	47751103	47751102	+	RAMPAGE_only	5	5	12	0.455042	3.418296	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47745564	47756744	NOP53|ENST00000598681.5	+	47745564,47746966,47750177,47750907,47751519,47752511,47754526,47754708,47755347,47756527,47756687	47745783,47747031,47750286,47751107,47751590,47752607,47754631,47754891,47755523,47756604,47756744	1.000000
adrenal_gland_male_adult_54_years	chr11	65382634	65382670	65382641	-	High_confidence	4	4	10	0.379202	3.121928	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382638	SLC25A45|ENST00000294187.10	-	65375193,65376817,65379375,65379866,65380131,65382485	65376675,65377076,65379561,65379938,65380175,65382638	0.600000
adrenal_gland_male_adult_54_years	chr1	51297935	51297975	51297945	-	High_confidence	6	7	21	0.796324	3.939471	chr1	51297625	51298239	LINE|L2|L2a	+	chr1	51287985	51297960	TTC39A|ENST00000534098.1	-	51287985,51288838,51290004,51290513,51294390,51297790	51288280,51288955,51290119,51290625,51294511,51297960	0.761905
adrenal_gland_male_adult_54_years	chr9	114423331	114423385	114423331	-	RAMPAGE_only	3	3	13	0.492962	3.180833	chr9	114423160	114423291	SINE|MIR|MIRb	-	chr9	114402080	114426071	STRG.58100.6	-	114402080,114403216,114403895,114406354,114407946,114424333,114424987,114425845	114402936,114403339,114404077,114406892,114423523,114424546,114425696,114426071	1.000000
adrenal_gland_male_adult_54_years	chr9	111284841	111284875	111284874	-	High_confidence	69	69	103	3.905779	5.746933	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.563107
adrenal_gland_male_adult_54_years	chr7	30179120	30179149	30179148	-	High_confidence	2	2	6	0.227521	2.584963	chr7	30179124	30179307	SINE|MIR|MIRb	+	chr7	30176386	30179014	AC007036.1|ENST00000430537.1	-	30176386,30178936	30176982,30179014	0.833333
adrenal_gland_male_adult_54_years	chr8	80485592	80485596	80485592	+	High_confidence	5	5	9	0.341282	2.947703	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	1.000000
adrenal_gland_male_adult_54_years	chr8	133684071	133684111	133684110	-	High_confidence	25	28	81	3.071535	5.598499	chr8	133683915	133684227	LTR|ERVL|ERV3-16A3_LTR	+	chr8	133663760	133684066	LOC105375773|NR_134462.1	-	133663760,133664701,133683968	133663933,133664975,133684066	0.617284
adrenal_gland_male_adult_54_years	chr1	27525737	27525746	27525737	+	High_confidence	2	3	10	0.379202	2.947703	chr1	27525728	27525810	LINE|L2|L2b	+	chr1	27525804	27530561	BX293535.1|ENST00000443579.1	+	27525804,27530359	27525885,27530561	0.500000
adrenal_gland_male_adult_54_years	chr11	8776391	8776409	8776391	-	High_confidence	2	2	7	0.265441	2.584963	chr11	8776369	8776474	LINE|L2|L2b	-	chr11	8730980	8776679	ST5|ENST00000533016.1	-	8730980,8750620,8776191	8731209,8750725,8776679	0.857143
adrenal_gland_male_adult_54_years	chr8	128049559	128049600	128049559	+	RAMPAGE_only	4	5	20	0.758404	3.616349	chr8	128049515	128049731	LTR|ERVL|LTR33	+	chr8	127890627	128101253	PVT1|ENST00000513868.6	+	127890627,127939507,127983903,127989161,128070159,128096517,128099369,128100979	127890998,127939676,127984204,127989291,128070272,128096654,128099573,128101253	0.950000
adrenal_gland_male_adult_54_years	chr6	85865858	85865888	85865858	+	High_confidence	15	15	59	2.237291	4.724952	chr6	85864765	85867347	LTR|ERV1|HERV3-int	-	chr6	85866183	85866808	STRG.41194.1	+	85866183	85866808	0.745763
adrenal_gland_male_adult_54_years	chr11	36498489	36498521	36498489	-	RAMPAGE_only	1	1	7	0.265441	2.584963	chr11	36498352	36498447	LINE|L2|L2a	-	chr11	36490376	36496510	TRAF6|ENST00000529150.1	-	36490376,36492550,36494975,36496359	36490650,36492628,36495047,36496510	0.714286
adrenal_gland_male_adult_54_years	chr11	86955920	86955950	86955949	+	High_confidence	4	5	9	0.341282	2.947703	chr11	86955862	86955972	SINE|MIR|MIRb	+	chr11	86956090	87000490	AP001528.1|ENST00000531827.1	+	86956090,86957981,86999875	86956260,86958026,87000490	0.555556
adrenal_gland_male_adult_54_years	chr12	56157322	56157459	56157338	+	High_confidence	16	16	181	6.863553	5.160412	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.895028
adrenal_gland_male_adult_54_years	chr1	31181203	31181242	31181203	-	RAMPAGE_only	2	3	12	0.455042	2.913977	chr1	31181174	31181290	SINE|MIR|MIR3	-	chr1	31179744	31239554	NKAIN1|ENST00000373736.6	-	31179744,31181859,31182529,31183816,31185246,31188049,31239493	31181712,31181941,31182590,31184014,31185327,31188187,31239554	0.916667
adrenal_gland_male_adult_54_years	chr11	61488893	61488896	61488895	+	High_confidence	7	12	15	0.568803	2.699514	chr11	61488729	61489022	LINE|L2|L2b	-	chr11	61488841	61490931	PPP1R32|ENST00000366212.8	+	61488841,61489781,61490500,61490813	61488962,61489946,61490584,61490931	0.933333
adrenal_gland_male_adult_54_years	chr16	81664292	81664349	81664292	+	RAMPAGE_only	5	5	36	1.365127	3.526557	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.944444
adrenal_gland_male_adult_54_years	chr6	166957430	166957438	166957430	-	High_confidence	4	4	10	0.379202	3.121928	chr6	166957416	166957859	LINE|L2|L2a	+	chr6	166929539	166957184	RNASET2|ENST00000476238.6	-	166929539,166931043,166934090,166938894,166943018,166946681,166948569,166952487,166956096,166957125	166929791,166931118,166934136,166939008,166943089,166946739,166948625,166952548,166956191,166957184	1.000000
adrenal_gland_male_adult_54_years	chr2	3536822	3536873	3536827	-	High_confidence	18	18	110	4.171220	5.740419	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.927273
adrenal_gland_male_adult_54_years	chr16	396845	396849	396848	+	High_confidence	3	3	8	0.303361	2.521641	chr16	396818	396940	SINE|Alu|AluJb	-	chr16	396754	400754	NME4|NM_001286436.1	+	396754,398989,399378,399626,400218	397079,399123,399480,399739,400754	0.875000
adrenal_gland_male_adult_54_years	chr6	84061973	84061974	84061973	+	RAMPAGE_only	4	4	7	0.265441	2.584963	chr6	84061901	84062061	LINE|L2|L2	-	chr6	84033755	84090881	MRAP2|ENST00000257776.4	+	84033755,84055311,84062892,84089090	84033883,84055445,84062992,84090881	0.714286
adrenal_gland_male_adult_54_years	chr2	95121537	95121554	95121537	-	High_confidence	4	4	12	0.455042	3.418296	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.833333
adrenal_gland_male_adult_54_years	chr17	47067498	47067534	47067498	-	High_confidence	478	514	2003	75.954129	5.951552	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.930105
adrenal_gland_male_adult_54_years	chr3	33142753	33142796	33142781	+	RAMPAGE_only	9	12	60	2.275211	4.850544	chr3	33142664	33142953	SINE|Alu|AluSx	-	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	0.900000
adrenal_gland_male_adult_54_years	chr8	128068950	128068964	128068961	+	RAMPAGE_only	3	3	12	0.455042	3.084963	chr8	128068865	128069026	LINE|L1|L1ME4c	+	chr8	127890627	128101253	PVT1|ENST00000513868.6	+	127890627,127939507,127983903,127989161,128070159,128096517,128099369,128100979	127890998,127939676,127984204,127989291,128070272,128096654,128099573,128101253	1.000000
adrenal_gland_male_adult_54_years	chr2	185782462	185782465	185782462	+	RAMPAGE_only	2	3	7	0.265441	2.807355	chr2	185782182	185782614	LINE|L2|L2c	-	chr2	185738894	185833290	FSIP2|ENST00000424728.5	+	185738894,185739345,185743132,185744321,185745428,185746668,185747312,185753721,185756191,185760987,185761971,185763182,185764501,185782704,185786251,185788642,185799696,185813544,185815370,185824433,185828155,185831812,185833089	185738993,185739471,185743294,185744411,185745568,185746810,185747423,185753842,185756278,185761103,185762017,185763289,185764565,185782762,185786288,185797526,185809133,185814042,185815471,185824480,185828199,185831882,185833290	0.571429
adrenal_gland_male_adult_54_years	chr14	29666076	29666100	29666082	-	High_confidence	3	3	9	0.341282	2.750000	chr14	29665934	29666040	LINE|L1|L1PB3	-	chr14	29638295	29666158	PRKD1|ENST00000468370.5	-	29638295,29638693,29656475,29663698,29666076	29638566,29638904,29656499,29663859,29666158	0.777778
adrenal_gland_male_adult_54_years	chr9	20658403	20658437	20658416	+	High_confidence	3	3	13	0.492962	3.584963	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658335	20770112	STRG.55169.4	+	20658335,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.846154
adrenal_gland_male_adult_54_years	chr15	74361111	74361126	74361111	+	RAMPAGE_only	7	8	16	0.606723	3.506891	chr15	74360994	74361387	LTR|ERV1|MER41-int	+	chr15	74354455	74364620	PPIAP46|ENST00000562009.1	+	74354455,74361513	74354685,74364620	0.937500
adrenal_gland_male_adult_54_years	chr14	95516119	95516123	95516120	+	High_confidence	9	16	23	0.872164	4.186704	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.956522
adrenal_gland_male_adult_54_years	chr7	150567287	150567288	150567287	+	High_confidence	6	6	9	0.341282	2.947703	chr7	150567129	150567290	DNA|hAT-Charlie|MER3	-	chr7	150567276	150573955	GIMAP4|ENST00000255945.3	+	150567276,150569887,150572128	150567437,150569959,150573955	1.000000
adrenal_gland_male_adult_54_years	chr1	209742616	209742617	209742616	-	High_confidence	5	5	8	0.303361	2.750000	chr1	209742384	209742599	DNA|hAT-Blackjack|MER63A	-	chr1	209661358	209742562	LOC101930114|NR_134510.1	-	209661358,209662910,209742496	209661567,209663061,209742562	0.500000
adrenal_gland_male_adult_54_years	chr12	4303818	4304139	4303957	+	RAMPAGE_only	22	24	229	8.683722	6.429849	chr12	4303932	4303980	LINE|RTE-BovB|MamRTE1	+	chr12	4278799	4305350	STRG.69564.2	+	4278799,4288841,4299859,4301014	4278919,4288990,4300942,4305350	1.000000
adrenal_gland_male_adult_54_years	chr6	130894344	130894356	130894344	-	RAMPAGE_only	5	5	11	0.417122	3.459432	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	1.000000
adrenal_gland_male_adult_54_years	chr17	35089876	35089901	35089876	-	High_confidence	4	4	11	0.417122	3.095795	chr17	35089759	35089896	SINE|MIR|MIRb	-	chr17	35009111	35089329	RFFL|NR_037713.1	-	35009111,35014739,35016369,35017522,35021370,35026373,35089104	35012149,35014763,35016580,35017606,35021781,35026561,35089329	0.636364
adrenal_gland_male_adult_54_years	chr2	42639113	42639135	42639113	+	RAMPAGE_only	11	11	38	1.440967	4.428996	chr2	42639051	42639230	SINE|Alu|AluSx	-	chr2	42570436	42756945	STRG.11190.4	+	42570436,42579106,42609457,42640172,42644126,42656199,42659762,42682400,42695764,42697775,42704193,42707902,42708873,42718987,42722888,42753373	42570504,42579200,42609584,42640236,42644244,42656302,42659862,42682589,42695839,42697834,42704318,42708054,42709014,42719074,42723035,42756945	0.894737
adrenal_gland_male_adult_54_years	chr11	117185994	117186013	117185994	+	High_confidence	4	4	14	0.530883	2.815072	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.785714
adrenal_gland_male_adult_54_years	chr2	27910882	27910914	27910884	+	RAMPAGE_only	6	14	33	1.251366	4.500000	chr2	27910851	27911226	LTR|ERVL-MaLR|THE1C	+	chr2	27894619	28025488	BABAM2|ENST00000604932.1	+	27894619,27929831,27987992,28025225	27894684,27929908,27988087,28025488	0.606061
adrenal_gland_male_adult_54_years	chr2	127084221	127084234	127084221	-	High_confidence	4	4	9	0.341282	2.947703	chr2	127084080	127084233	DNA|hAT-Charlie|MER5A1	+	chr2	127048022	127084550	BIN1|NM_001320642.1	-	127048022,127050420,127050801,127051153,127052254,127053421,127053904,127057472,127059010,127062114,127063570,127063932,127068162,127068923,127069994,127070552,127070761,127076625,127083588	127048633,127050522,127050912,127051243,127052362,127053445,127054012,127057601,127059155,127062197,127063646,127064018,127068255,127069031,127070090,127070647,127070816,127076706,127084550	0.888889
adrenal_gland_male_adult_54_years	chr16	30499535	30499551	30499550	-	High_confidence	31	31	80	3.033615	4.839386	chr16	30499510	30499629	SINE|MIR|MIR1_Amn	+	chr16	30498765	30499554	AC116348.2|ENST00000563751.1	-	30498765,30499363	30499151,30499554	0.950000
adrenal_gland_male_adult_54_years	chr20	51526030	51526044	51526030	-	RAMPAGE_only	6	8	13	0.492962	3.238901	chr20	51525529	51526222	LINE|L2|L2b	+	chr20	51386956	51542719	NFATC2|NM_012340.4	-	51386956,51398642,51432066,51435187,51435705,51454547,51473979,51475457,51516783,51523080,51542369	51391451,51398730,51432756,51435314,51435761,51454688,51474152,51475660,51516955,51524110,51542719	1.000000
adrenal_gland_male_adult_54_years	chr16	20674497	20674498	20674497	+	High_confidence	172	192	201	7.621957	3.661566	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.910448
adrenal_gland_male_adult_54_years	chr6	127330835	127330893	127330892	-	High_confidence	3	3	12	0.455042	3.277613	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.666667
adrenal_gland_male_adult_54_years	chr9	39810033	39810099	39810033	-	High_confidence	58	59	232	8.797483	6.199432	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.530172
adrenal_gland_male_adult_54_years	chr2	203533429	203533440	203533429	-	High_confidence	12	16	40	1.516807	4.823864	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.625000
adrenal_gland_male_adult_54_years	chr8	11795578	11795582	11795578	+	High_confidence	8	9	14	0.530883	3.093069	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	1.000000
adrenal_gland_male_adult_54_years	chr12	50033476	50033477	50033476	-	High_confidence	7	7	11	0.417122	2.845351	chr12	50033334	50033456	LINE|L2|L2c	-	chr12	50005255	50033136	RACGAP1|ENST00000548247.1	-	50005255,50016630,50031696,50032969	50005392,50016719,50031867,50033136	0.909091
adrenal_gland_male_adult_54_years	chr2	186602121	186602128	186602127	+	RAMPAGE_only	9	10	22	0.834244	3.720129	chr2	186602116	186602175	LINE|RTE-BovB|MamRTE1	-	chr2	186600204	186677441	ITGAV|ENST00000433736.6	+	186600204,186602020,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186600381,186602151,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186677441	1.000000
adrenal_gland_male_adult_54_years	chr17	28406547	28406548	28406547	-	High_confidence	6	6	6	0.227521	2.584963	chr17	28406429	28406560	SINE|MIR|MIR	-	chr17	28404723	28406630	SLC46A1|ENST00000584995.5	-	28404723,28405886,28406456	28405468,28405997,28406630	1.000000
adrenal_gland_male_adult_54_years	chr5	78549181	78549185	78549184	-	High_confidence	4	4	8	0.303361	2.500000	chr5	78548966	78549452	LTR|ERVL-MaLR|MLT1H	-	chr5	78485214	78549151	LHFPL2|ENST00000515007.6	-	78485214,78509783,78549025	78489153,78510398,78549151	0.750000
adrenal_gland_male_adult_54_years	chr9	111783896	111783964	111783963	-	High_confidence	48	64	390	14.788872	6.712456	chr9	111783697	111784151	LTR|ERVL|MER70A	-	chr9	111707535	111783962	STRG.57960.1	-	111707535,111713099,111714444,111718183,111723791,111727632,111738279,111741475,111746233,111748091,111756324,111758083,111758694,111775790,111780929,111783798	111707924,111713172,111714623,111722585,111723911,111728049,111738522,111741570,111746342,111748199,111756478,111758195,111758848,111775975,111781017,111783962	0.910256
adrenal_gland_male_adult_54_years	chr10	102836771	102836778	102836771	-	High_confidence	3	4	9	0.341282	2.725481	chr10	102836703	102836755	SINE|MIR|MIRb	-	chr10	102830604	102836772	CYP17A1|ENST00000640633.1	-	102830604,102831507,102832510,102832992,102834035,102834784,102835253,102836713	102830985,102831611,102832680,102833208,102834122,102835014,102835392,102836772	0.888889
adrenal_gland_male_adult_54_years	chr6	17856034	17856067	17856034	-	RAMPAGE_only	7	8	15	0.568803	3.323231	chr6	17855745	17856010	SINE|Alu|AluJo	-	chr6	17759182	17987463	KIF13A|ENST00000378814.9	-	17759182,17764154,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571,17796668,17799265,17799951,17804360,17805474,17808767,17817019,17825767,17826037,17828239,17831100,17833960,17836877,17837471,17849376,17850322,17851954,17855436,17856029,17873376,17898167,17987053,17987408	17760877,17764946,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794704,17796820,17799439,17800113,17804510,17805615,17808930,17817233,17825934,17826124,17828370,17831235,17834071,17837090,17837583,17849489,17850457,17852042,17855617,17856122,17873437,17898180,17987144,17987463	1.000000
adrenal_gland_male_adult_54_years	chr7	6044569	6044634	6044569	-	RAMPAGE_only	7	8	39	1.478887	3.346283	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6041152	6046437	EIF2AK1|ENST00000470168.1	-	6041152,6042932,6044561,6046070	6041219,6042993,6044661,6046437	0.820513
adrenal_gland_male_adult_54_years	chr2	6918647	6918680	6918679	-	High_confidence	63	63	243	9.214605	6.402957	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.909465
adrenal_gland_male_adult_54_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	43	44	44	1.668488	4.536389	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.977273
adrenal_gland_male_adult_54_years	chr19	45524130	45524140	45524130	+	RAMPAGE_only	20	21	39	1.478887	4.387465	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.846154
adrenal_gland_male_adult_54_years	chr2	171414676	171414677	171414676	-	RAMPAGE_only	5	5	7	0.265441	2.584963	chr2	171414444	171414743	SINE|Alu|AluJb	+	chr2	171331807	171433116	METTL8|ENST00000460539.5	-	171331807,171339183,171392042,171433025	171331867,171339554,171392197,171433116	0.571429
adrenal_gland_male_adult_54_years	chr12	120465630	120465651	120465650	-	High_confidence	8	8	17	0.644643	3.454822	chr12	120465539	120465607	SINE|MIR|MIRb	-	chr12	120461710	120464943	SRSF9|ENST00000548792.1	-	120461710,120463949	120462162,120464943	1.000000
adrenal_gland_male_adult_54_years	chr14	50756863	50756897	50756896	-	RAMPAGE_only	3	3	9	0.341282	2.750000	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.888889
adrenal_gland_male_adult_54_years	chr6	76774949	76775007	76774949	+	High_confidence	69	69	408	15.471435	6.200698	chr6	76774716	76775166	LTR|ERVL|MER70A	+	chr6	76774982	76807336	STRG.40617.4	+	76774982	76807336	0.661765
adrenal_gland_male_adult_54_years	chr4	180246395	180246424	180246423	+	RAMPAGE_only	2	3	9	0.341282	2.500000	chr4	180246251	180246533	SINE|Alu|AluY	+	chr4	180058913	180282482	STRG.31831.11	+	180058913,180148814,180235908	180059282,180148934,180282482	0.777778
adrenal_gland_male_adult_54_years	chr3	151539200	151539292	151539216	-	RAMPAGE_only	5	5	49	1.858089	4.761842	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.816327
adrenal_gland_male_adult_54_years	chr11	11963557	11963857	11963856	-	RAMPAGE_only	21	21	253	9.593807	5.642433	chr11	11963694	11963925	SINE|MIR|MIRc	+	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.996047
adrenal_gland_male_adult_54_years	chr22	18149845	18149874	18149868	+	High_confidence	22	22	63	2.388972	4.852468	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.968254
adrenal_gland_male_adult_54_years	chr2	27904547	27904586	27904549	+	RAMPAGE_only	20	25	39	1.478887	4.465946	chr2	27904412	27904729	LINE|L1|HAL1	+	chr2	27894619	28025488	BABAM2|ENST00000604932.1	+	27894619,27929831,27987992,28025225	27894684,27929908,27988087,28025488	0.666667
adrenal_gland_male_adult_54_years	chr7	88272577	88272601	88272577	-	RAMPAGE_only	22	23	38	1.440967	4.249730	chr7	88272526	88272659	DNA|hAT-Charlie|MER5C1	+	chr7	88270891	88306891	STEAP4|ENST00000380079.8	-	88270891,88280914,88282640,88283813,88306791	88279628,88281079,88283168,88284271,88306891	0.973684
adrenal_gland_male_adult_54_years	chr2	119431422	119431423	119431422	+	High_confidence	5	5	7	0.265441	2.584963	chr2	119431376	119431442	SINE|MIR|MIRc	-	chr2	119431419	119438520	STRG.13906.2	+	119431419,119436888	119431585,119438520	0.571429
adrenal_gland_male_adult_54_years	chr1	179302546	179302549	179302546	+	RAMPAGE_only	4	4	11	0.417122	3.321928	chr1	179302291	179302649	LTR|ERVL-MaLR|THE1D	+	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.818182
adrenal_gland_male_adult_54_years	chr2	190415309	190415334	190415309	+	RAMPAGE_only	5	7	14	0.530883	3.378783	chr2	190415267	190415569	SINE|Alu|AluJr4	-	chr2	190408354	190502315	MFSD6|ENST00000392328.5	+	190408354,190415291,190435976,190469757,190488656,190489767,190497438,190500014	190408503,190415413,190437561,190469855,190488818,190489866,190497719,190502315	1.000000
adrenal_gland_male_adult_54_years	chrX	129493040	129493044	129493040	-	RAMPAGE_only	4	4	8	0.303361	2.807355	chrX	129492703	129493323	LINE|L1|L1ME4a	+	chrX	129446845	129523405	SMARCA1|ENST00000371121.4	-	129446845,129448332,129465519,129465843,129468772,129471203,129480700,129481074,129487017,129488936,129490059,129491940,129493039,129496749,129497844,129499731,129504733,129506079,129507940,129511803,129515686,129515893,129516330,129518360,129523196	129447233,129448443,129465732,129465962,129468905,129471326,129480814,129481185,129487137,129489085,129490192,129492093,129493075,129496871,129498071,129499841,129504802,129506211,129508096,129511983,129515787,129515994,129516497,129518447,129523405	0.875000
adrenal_gland_male_adult_54_years	chr14	81170392	81170420	81170392	-	High_confidence	23	23	139	5.270906	5.748784	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.935252
adrenal_gland_male_adult_54_years	chr1	89134986	89135003	89134998	-	High_confidence	4	5	15	0.568803	3.521641	chr1	89133498	89139088	LINE|L1|L1PA15	+	chr1	89131740	89135001	STRG.4070.1	-	89131740,89133257,89134799	89132403,89133451,89135001	0.866667
adrenal_gland_male_adult_54_years	chr11	63625065	63625092	63625065	-	RAMPAGE_only	10	10	33	1.251366	4.176109	chr11	63624954	63625088	DNA|hAT-Charlie|MER5A	+	chr11	63624086	63671612	ATL3|ENST00000398868.7	-	63624086,63631039,63633025,63635533,63636206,63643356,63644168,63646506,63651935,63652470,63658760,63659037,63671289	63629405,63631471,63633097,63635590,63636334,63643495,63644261,63646563,63651986,63652575,63658904,63659252,63671612	0.969697
adrenal_gland_male_adult_54_years	chr14	92733121	92733127	92733121	-	RAMPAGE_only	4	4	9	0.341282	2.750000	chr14	92732868	92733169	SINE|Alu|AluSg	+	chr14	92703846	92748603	LGMN|ENST00000557609.5	-	92703846,92704639,92706482,92709671,92711658,92711836,92712804,92713822,92714375,92717379,92718746,92732648,92748488	92704361,92704707,92706653,92709872,92711748,92711955,92712871,92713885,92714451,92717461,92718844,92732815,92748603	0.888889
adrenal_gland_male_adult_54_years	chr8	119875376	119875414	119875376	+	RAMPAGE_only	2	3	11	0.417122	2.921928	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.818182
adrenal_gland_male_adult_54_years	chr10	95874240	95874293	95874240	-	RAMPAGE_only	3	3	16	0.606723	3.452820	chr10	95874049	95875624	LTR|ERVL-MaLR|THE1A-int	-	chr10	95867180	95907775	STRG.62460.3	-	95867180,95876517,95897527,95904829,95907662	95875666,95876660,95897679,95904935,95907775	1.000000
adrenal_gland_male_adult_54_years	chr1	150457334	150457344	150457334	+	High_confidence	4	4	10	0.379202	2.921928	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150456988	150473556	STRG.5566.4	+	150456988,150460059,150464526,150470560,150471882	150457570,150460317,150464727,150471742,150473556	1.000000
adrenal_gland_male_adult_54_years	chr3	179740075	179740081	179740080	+	RAMPAGE_only	4	4	9	0.341282	2.947703	chr3	179740053	179740112	SINE|MIR|MIR	+	chr3	179721563	179761151	USP13|ENST00000497155.1	+	179721563,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179761111	179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179761151	0.777778
adrenal_gland_male_adult_54_years	chr11	125090446	125090447	125090446	+	RAMPAGE_only	166	168	180	6.825633	5.789004	chr11	125089312	125090854	LTR|ERV1|LTR12C	+	chr11	125063334	125104919	STRG.68905.1	+	125063334,125076756,125077229,125077449,125079111,125079683,125080613,125081420,125081753,125082243,125083814,125084233,125084824,125085065,125085394,125085576,125085953,125088118,125102104	125063426,125076838,125077323,125077528,125079247,125079760,125080780,125081458,125081906,125082334,125083877,125084319,125084873,125085139,125085473,125085674,125086018,125090871,125104919	0.888889
adrenal_gland_male_adult_54_years	chr3	129365473	129365474	129365473	-	High_confidence	10	10	14	0.530883	3.238901	chr3	129365318	129365670	LTR|ERVL-MaLR|THE1A	-	chr3	129361984	129365543	STRG.22965.1	-	129361984	129365543	0.928571
adrenal_gland_male_adult_54_years	chr2	28997478	28997486	28997478	+	High_confidence	4	4	11	0.417122	3.121928	chr2	28997313	28997521	LINE|L2|L2b	+	chr2	28997433	29018257	STRG.10728.8	+	28997433,28998142,28999180,29002535,29003491,29011454,29014394,29017153,29017791	28997666,28998253,28999468,29002747,29003682,29011501,29014561,29017304,29018257	0.636364
adrenal_gland_male_adult_54_years	chr17	59619874	59619923	59619894	+	High_confidence	2620	2898	8210	311.324711	4.930974	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.969062
adrenal_gland_male_adult_54_years	chr9	89479886	89479890	89479889	-	High_confidence	26	26	40	1.516807	3.528240	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89402924	89479890	SEMA4D|ENST00000540475.5	-	89402924,89405350,89455887,89479571	89403016,89405699,89455953,89479890	0.900000
adrenal_gland_male_adult_54_years	chr9	113387258	113387572	113387258	-	RAMPAGE_only	10	10	182	6.901474	6.187356	chr9	113387097	113387638	LINE|L2|L2a	+	chr9	113386311	113401120	ALAD|NM_001317745.1	-	113386311,113388976,113389437,113389598,113389772,113390404,113390592,113390797,113391526,113393446,113400933	113388361,113389106,113389524,113389686,113389828,113390493,113390676,113390933,113391623,113393634,113401120	1.000000
adrenal_gland_male_adult_54_years	chr19	17556545	17556546	17556545	+	High_confidence	5	5	8	0.303361	2.500000	chr19	17556574	17556631	SINE|MIR|MIR	+	chr19	17556560	17568577	COLGALT1|ENST00000600474.1	+	17556560,17559310,17560347,17567405,17568508	17556679,17559421,17560465,17567540,17568577	0.750000
adrenal_gland_male_adult_54_years	chr9	111784059	111784062	111784061	-	High_confidence	20	26	34	1.289286	4.635007	chr9	111783697	111784151	LTR|ERVL|MER70A	-	chr9	111707535	111783962	STRG.57960.1	-	111707535,111713099,111714444,111718183,111723791,111727632,111738279,111741475,111746233,111748091,111756324,111758083,111758694,111775790,111780929,111783798	111707924,111713172,111714623,111722585,111723911,111728049,111738522,111741570,111746342,111748199,111756478,111758195,111758848,111775975,111781017,111783962	0.941176
adrenal_gland_male_adult_54_years	chr3	9792219	9792226	9792225	-	High_confidence	12	14	21	0.796324	3.721928	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.809524
adrenal_gland_male_adult_54_years	chr11	112176365	112176373	112176372	+	High_confidence	45	63	131	4.967544	5.877498	chr11	112176309	112176508	LINE|L2|L2c	-	chr11	112176370	112218135	BCO2|ENST00000526088.5	+	112176370,112179277,112193473,112193878,112194652,112199698,112200612,112202022,112213723,112214761,112216219,112217760	112176458,112179482,112193697,112193994,112194755,112199827,112200773,112202190,112213861,112214926,112216330,112218135	0.786260
adrenal_gland_male_adult_54_years	chr4	2861102	2861155	2861154	+	RAMPAGE_only	4	5	13	0.492962	3.700440	chr4	2860917	2861297	LINE|L2|L2a	-	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.692308
adrenal_gland_male_adult_54_years	chr20	50172544	50172595	50172594	+	High_confidence	11	12	47	1.782249	5.299270	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172589	50176671	LINC01273|ENST00000411453.2	+	50172589,50172922,50176280	50172788,50173017,50176671	0.808511
adrenal_gland_male_adult_54_years	chr12	107864789	107864816	107864815	-	High_confidence	5	5	12	0.455042	3.251629	chr12	107864193	107865394	LTR|ERV1|LTR12D	+	chr12	107839290	107863967	AC126177.4|ENST00000547452.5	-	107839290,107845400,107845962,107860417,107863725	107839366,107845587,107846104,107860501,107863967	0.500000
adrenal_gland_male_adult_54_years	chr12	91179462	91179549	91179462	-	High_confidence	3096	3762	13025	493.910398	7.653230	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.893282
adrenal_gland_male_adult_54_years	chr1	179322456	179322490	179322456	+	RAMPAGE_only	8	8	17	0.644643	3.263933	chr1	179322375	179322519	SINE|Alu|AluSx3	-	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	1.000000
adrenal_gland_male_adult_54_years	chr1	65432833	65432877	65432855	+	RAMPAGE_only	4	4	15	0.568803	2.866248	chr1	65432670	65432950	LINE|L1|L1MA7	+	chr1	65420715	65436007	LEPROT|NM_001198681.1	+	65420715,65421327,65425302,65429861,65431802	65420740,65421459,65425378,65430048,65436007	1.000000
adrenal_gland_male_adult_54_years	chr10	93431448	93431449	93431448	-	RAMPAGE_only	13	13	17	0.644643	3.750000	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.941176
adrenal_gland_male_adult_54_years	chr22	39021125	39021161	39021125	+	High_confidence	21	21	102	3.867859	5.384189	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.980392
adrenal_gland_male_adult_54_years	chr19	46413426	46413612	46413611	-	High_confidence	56	61	466	17.670806	6.711424	chr19	46413579	46413731	LTR|Gypsy|LTR104_Mam	-	chr19	46410378	46413564	CCDC8|ENST00000307522.4	-	46410378	46413564	0.989270
adrenal_gland_male_adult_54_years	chr17	30968780	30968804	30968780	+	High_confidence	3	3	13	0.492962	3.084963	chr17	30968749	30968853	LINE|L2|L2	-	chr17	30968784	30970307	RNF135|ENST00000582674.1	+	30968784,30970277	30969335,30970307	0.769231
adrenal_gland_male_adult_54_years	chr9	129493495	129493535	129493534	+	High_confidence	2	2	8	0.303361	2.500000	chr9	129493487	129493626	LINE|L2|L2b	-	chr9	129493576	129513683	LINC00963|ENST00000623185.3	+	129493576,129503322,129504891,129513418	129493595,129503672,129505043,129513683	0.875000
adrenal_gland_male_adult_54_years	chr8	116648828	116648905	116648864	-	RAMPAGE_only	15	16	45	1.706408	4.671730	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.933333
adrenal_gland_male_adult_54_years	chr4	184339459	184339463	184339459	-	RAMPAGE_only	7	7	15	0.568803	3.039149	chr4	184339404	184339941	LTR|ERV1|MER41B	-	chr4	184333974	184347906	STRG.31753.2	-	184333974,184334526,184347712	184334419,184342053,184347906	0.933333
adrenal_gland_male_adult_54_years	chr15	57451575	57451582	57451575	+	RAMPAGE_only	5	5	11	0.417122	3.095795	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
adrenal_gland_male_adult_54_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	114	114	114	4.322901	5.593641	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.991228
adrenal_gland_male_adult_54_years	chr11	58578102	58578133	58578132	-	High_confidence	21	39	128	4.853784	5.439012	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58540097	58578166	STRG.66119.3	-	58540097,58549972,58551064,58554840,58564154,58570555,58577985	58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.765625
adrenal_gland_male_adult_54_years	chr11	67886517	67886542	67886517	+	High_confidence	10	11	32	1.213446	3.718139	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.968750
adrenal_gland_male_adult_54_years	chr4	4461944	4462005	4461960	-	High_confidence	133	142	618	23.434674	6.949644	chr4	4461848	4462205	LTR|ERVL|LTR79	+	chr4	4425160	4461954	STX18|ENST00000512195.5	-	4425160,4434769,4438393,4457190,4457422,4459371,4461905	4425222,4434858,4438509,4457257,4457500,4459487,4461954	0.899676
adrenal_gland_male_adult_54_years	chr2	182928788	182928790	182928788	-	RAMPAGE_only	9	13	16	0.606723	3.323231	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.687500
adrenal_gland_male_adult_54_years	chr7	29483815	29483842	29483841	+	High_confidence	9	9	24	0.910084	3.641250	chr7	29483882	29484008	SINE|MIR|MIRb	+	chr7	29483815	29512740	CHN2|ENST00000410098.1	+	29483815,29495951,29499866,29504743,29507227,29509300,29512563	29483975,29496036,29500040,29504821,29507365,29509406,29512740	0.875000
adrenal_gland_male_adult_54_years	chr1	30738962	30739008	30738962	-	RAMPAGE_only	4	5	26	0.985925	3.939471	chr1	30738862	30738914	SINE|MIR|MIR	-	chr1	30732468	30757820	LAPTM5|ENST00000294507.3	-	30732468,30735172,30737603,30738939,30739808,30741639,30742455,30757658	30733917,30735265,30737699,30739062,30739937,30741716,30742549,30757820	0.961538
adrenal_gland_male_adult_54_years	chr14	106845850	106845883	106845858	-	RAMPAGE_only	9	11	39	1.478887	4.506825	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106809820	106811131	STRG.81249.2	-	106809820	106811131	0.692308
adrenal_gland_male_adult_54_years	chr15	75007494	75007505	75007504	+	RAMPAGE_only	14	14	41	1.554728	4.553056	chr15	75007388	75007556	SINE|Alu|AluJo	-	chr15	75011657	75018467	SCAMP5|ENST00000564779.5	+	75011657,75011791,75012676,75016592,75017869,75018417	75011680,75011846,75012805,75016749,75017971,75018467	0.585366
adrenal_gland_male_adult_54_years	chr19	5680205	5680249	5680240	-	High_confidence	8	8	28	1.061765	4.356558	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.964286
adrenal_gland_male_adult_54_years	chr1	220032401	220032402	220032401	-	RAMPAGE_only	5	6	7	0.265441	2.584963	chr1	220032081	220032353	SINE|Alu|AluY	-	chr1	219987295	220046451	EPRS|ENST00000609181.5	-	219987295,219988589,219996982,220001137,220005247,220006105,220007201,220010945,220018125,220018448,220018994,220019987,220022346,220024263,220025131,220030385,220032386,220033501,220034913,220040184,220046342	219987404,219988823,219997342,220001255,220005360,220006313,220007338,220011056,220018146,220018508,220019079,220020221,220022518,220024456,220025258,220030480,220032526,220033658,220035013,220040269,220046451	0.857143
adrenal_gland_male_adult_54_years	chr2	3613317	3613361	3613317	+	RAMPAGE_only	6	7	33	1.251366	3.071078	chr2	3613229	3613340	DNA|hAT-Ac|OldhAT1	-	chr2	3606051	3644644	COLEC11|NM_001255988.1	+	3606051,3613310,3640277,3643443,3643726	3606243,3613382,3640331,3643539,3644644	1.000000
adrenal_gland_male_adult_54_years	chr19	39839801	39839821	39839801	-	High_confidence	8	8	23	0.872164	4.088779	chr19	39839431	39839808	LINE|L2|L2a	-	chr19	39834457	39840441	FBL|ENST00000595545.5	-	39834457,39836555,39837710,39839034,39840232,39840413	39834813,39836668,39837843,39839205,39840327,39840441	0.913043
adrenal_gland_male_adult_54_years	chr14	100569620	100569646	100569620	-	High_confidence	3	3	8	0.303361	2.500000	chr14	100569527	100569624	LINE|L2|L2b	+	chr14	100538887	100569558	BEGAIN|ENST00000556188.5	-	100538887,100540495,100543857,100544999,100546500,100567910,100569426	100539315,100540579,100543965,100545066,100546662,100567939,100569558	0.875000
adrenal_gland_male_adult_54_years	chr8	39082976	39083066	39083065	+	RAMPAGE_only	9	9	49	1.858089	4.286269	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.795918
adrenal_gland_male_adult_54_years	chr17	8310235	8310241	8310240	+	High_confidence	6	6	12	0.455042	3.251629	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.833333
adrenal_gland_male_adult_54_years	chrX	16712878	16712933	16712889	-	High_confidence	12	13	43	1.630568	4.943593	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.953488
adrenal_gland_male_adult_54_years	chr17	27889169	27889202	27889169	-	RAMPAGE_only	5	5	25	0.948005	3.733661	chr17	27888753	27889272	LINE|CR1|L3	-	chr17	27878313	27892321	LYRM9|ENST00000379103.7	-	27878313,27880273,27882568,27882938,27892242	27879490,27880366,27882712,27883130,27892321	0.920000
adrenal_gland_male_adult_54_years	chr6	125219533	125219540	125219536	+	High_confidence	3	4	10	0.379202	2.947703	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.900000
adrenal_gland_male_adult_54_years	chr18	80147921	80147930	80147921	+	High_confidence	5	9	13	0.492962	3.392747	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.538462
adrenal_gland_male_adult_54_years	chr1	6208681	6208682	6208681	-	High_confidence	99	99	99	3.754098	3.527363	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.989899
adrenal_gland_male_adult_54_years	chr11	65431474	65431511	65431483	+	RAMPAGE_only	3	3	15	0.568803	3.640224	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65423637	65445540	STRG.66558.14	+	65423637,65432397	65432372,65445540	1.000000
adrenal_gland_male_adult_54_years	chr12	91178974	91178975	91178974	-	High_confidence	8	8	9	0.341282	2.500000	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.888889
adrenal_gland_male_adult_54_years	chr16	28608315	28608331	28608315	-	High_confidence	4	4	11	0.417122	3.321928	chr16	28608009	28608286	SINE|Alu|AluSp	-	chr16	28605195	28608920	SULT1A1|ENST00000569554.5	-	28605195,28606055,28606760,28606950,28608290,28608477,28608707	28605933,28606236,28606855,28607077,28608388,28608603,28608920	0.909091
adrenal_gland_male_adult_54_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	19	19	19	0.720483	3.892407	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
adrenal_gland_male_adult_54_years	chr12	119704490	119704565	119704554	-	High_confidence	62	70	218	8.266600	6.494631	chr12	119704528	119704734	DNA|hAT-Charlie|MER20	-	chr12	119685793	119704548	STRG.74606.2	-	119685793,119690150,119697658,119697975,119700744,119701623,119701849,119704362	119688255,119690454,119697838,119698054,119700825,119701752,119701958,119704548	0.922018
adrenal_gland_male_adult_54_years	chr1	33021416	33021456	33021455	-	High_confidence	9	11	25	0.948005	4.053509	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010518	33021690	STRG.1604.5	-	33010518,33014521,33021366,33021592	33013402,33014594,33021461,33021690	0.960000
adrenal_gland_male_adult_54_years	chr7	103353956	103353957	103353956	+	High_confidence	9	9	13	0.492962	3.392747	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.692308
adrenal_gland_male_adult_54_years	chr3	62150030	62150064	62150030	-	High_confidence	5	5	26	0.985925	4.315824	chr3	62149964	62150083	LINE|L2|L2a	+	chr3	62138042	62150048	STRG.21142.1	-	62138042,62149845	62138214,62150048	0.538462
adrenal_gland_male_adult_54_years	chr9	97563770	97563814	97563813	+	RAMPAGE_only	6	8	14	0.530883	3.521641	chr9	97563706	97563887	SINE|MIR|MIRc	-	chr9	97555434	97601254	TMOD1|ENST00000375175.1	+	97555434,97562731,97564037,97565847,97568893,97591290,97599633	97555711,97562821,97564168,97565955,97569037,97591435,97601254	0.857143
adrenal_gland_male_adult_54_years	chr6	143828833	143828978	143828833	+	RAMPAGE_only	12	14	94	3.564497	5.447088	chr6	143828714	143828929	DNA|hAT-Charlie|MER20B	-	chr6	143677964	143831185	PHACTR2|NM_001100164.1	+	143677964,143712015,143748984,143753753,143760400,143765260,143772257,143774058,143777327,143783218,143788772,143807056,143823673	143678209,143712183,143749065,143753912,143760640,143765798,143772457,143774215,143777383,143783280,143788910,143807133,143831185	0.978723
adrenal_gland_male_adult_54_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	24	24	34	1.289286	4.359378	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.852941
adrenal_gland_male_adult_54_years	chr8	93858105	93858106	93858105	+	High_confidence	7	7	7	0.265441	2.521641	chr8	93857958	93858227	LINE|L1|L1MB3	+	chr8	93857806	93922443	STRG.52701.6	+	93857806,93922015	93858194,93922443	0.714286
adrenal_gland_male_adult_54_years	chr9	127509520	127509521	127509520	-	RAMPAGE_only	6	6	9	0.341282	3.169925	chr9	127509331	127509530	SINE|MIR|MIR3	+	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	0.555556
adrenal_gland_male_adult_54_years	chr7	150322656	150322674	150322656	+	High_confidence	892	1039	2874	108.982609	5.929781	chr7	150322211	150322830	LTR|ERV1|MER41B	+	chr7	150322638	150332721	STRG.49780.4	+	150322638,150325840,150328634	150323212,150326010,150332721	0.992345
adrenal_gland_male_adult_54_years	chr7	11193317	11193367	11193340	+	High_confidence	23	26	63	2.388972	4.660085	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.730159
adrenal_gland_male_adult_54_years	chr5	57186580	57186619	57186580	+	RAMPAGE_only	8	10	33	1.251366	4.324849	chr5	57186403	57186591	LINE|L1|L1ME1	-	chr5	57175945	57263085	GPBP1|ENST00000511209.5	+	57175945,57214073,57221375,57230845,57231097,57235965,57246299,57247074,57249453,57250953,57261179,57262593	57176400,57214193,57221396,57230969,57231321,57236032,57246484,57247215,57249576,57251141,57261282,57263085	0.939394
adrenal_gland_male_adult_54_years	chr2	72693342	72693354	72693353	-	RAMPAGE_only	41	41	60	2.275211	4.887901	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.833333
adrenal_gland_male_adult_54_years	chr16	28538686	28538705	28538690	-	High_confidence	3	6	13	0.492962	2.931209	chr16	28538407	28538698	SINE|Alu|AluJo	+	chr16	28537506	28538951	NUPR1|ENST00000567646.1	-	28537506,28538005,28538525,28538795	28537669,28538155,28538654,28538951	0.615385
adrenal_gland_male_adult_54_years	chr2	28165301	28165304	28165301	+	RAMPAGE_only	3	3	9	0.341282	2.503258	chr2	28165020	28165437	LINE|L2|L2b	-	chr2	27978156	28338901	STRG.10692.6	+	27978156,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28338449	27978374,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28338901	1.000000
adrenal_gland_male_adult_54_years	chr4	184537517	184537596	184537538	-	High_confidence	15	16	40	1.516807	4.884184	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184536775	184537296	STRG.31780.1	-	184536775	184537296	0.525000
adrenal_gland_male_adult_54_years	chr7	151350011	151350040	151350015	+	RAMPAGE_only	2	3	13	0.492962	3.251629	chr7	151349775	151350771	LTR|ERVK|LTR13	-	chr7	151351119	151360295	NUB1|ENST00000493588.5	+	151351119,151352811,151355767,151356127,151360140	151351482,151352882,151355950,151356222,151360295	0.769231
adrenal_gland_male_adult_54_years	chr19	18938394	18938395	18938394	-	High_confidence	8	8	9	0.341282	2.500000	chr19	18938201	18938361	SINE|MIR|MIR3	-	chr19	18929438	18938982	HOMER3|ENST00000594439.5	-	18929438,18931324,18931508,18931975,18932923,18938352,18938727,18938968	18929634,18931411,18931625,18932132,18933045,18938484,18938884,18938982	0.777778
adrenal_gland_male_adult_54_years	chr3	129559620	129559621	129559620	-	High_confidence	14	14	19	0.720483	3.787144	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129560414	STRG.23015.6	-	129555213,129556616,129557082,129558427,129560329	129556428,129556691,129557223,129559783,129560414	1.000000
adrenal_gland_male_adult_54_years	chr20	3795750	3795781	3795750	+	High_confidence	32	34	135	5.119225	5.345093	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.985185
adrenal_gland_male_adult_54_years	chr2	201115997	201116034	201116033	+	High_confidence	6	6	30	1.137606	4.281728	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201176687	CFLAR|ENST00000309955.7	+	201116103,201129728,201133028,201135971,201140356,201145377,201149002,201149753,201160431,201163834	201116481,201130146,201133134,201136107,201140439,201145432,201149052,201149835,201160942,201176687	0.933333
adrenal_gland_male_adult_54_years	chr11	77175226	77175303	77175302	+	High_confidence	35	44	140	5.308826	5.955869	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.971429
adrenal_gland_male_adult_54_years	chr7	107041406	107041436	107041406	+	RAMPAGE_only	2	2	11	0.417122	2.913977	chr7	107041280	107041502	LTR|ERVL-MaLR|MLT1J	+	chr7	107044648	107161811	PRKAR2B|ENST00000265717.4	+	107044648,107070280,107121951,107128211,107140846,107146307,107150921,107153176,107156983,107157185,107159448	107045214,107070316,107122004,107128295,107140953,107146461,107151023,107153251,107157049,107157324,107161811	1.000000
adrenal_gland_male_adult_54_years	chr19	12800944	12801045	12800944	-	High_confidence	12	12	105	3.981619	5.313933	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.980952
adrenal_gland_male_adult_54_years	chr1	51570671	51570696	51570692	-	High_confidence	13	13	42	1.592648	4.850534	chr1	51570665	51570811	SINE|MIR|MIRc	+	chr1	51565811	51570680	STRG.2576.1	-	51565811,51567173,51569547,51570549	51566541,51567843,51569750,51570680	0.976190
adrenal_gland_male_adult_54_years	chr4	173369526	173369552	173369526	-	High_confidence	3	3	9	0.341282	2.641604	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.777778
adrenal_gland_male_adult_54_years	chr9	98943554	98943617	98943575	+	High_confidence	6	7	26	0.985925	4.103910	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
adrenal_gland_male_adult_54_years	chrX	38612622	38612627	38612622	+	RAMPAGE_only	5	5	10	0.379202	2.503258	chrX	38612500	38614189	LINE|L1|HAL1	-	chrX	38570682	38675816	TSPAN7|ENST00000488893.5	+	38570682,38666120,38671375,38674220,38675704	38570946,38666309,38671450,38674316,38675816	0.700000
adrenal_gland_male_adult_54_years	chr4	2860848	2860849	2860848	+	RAMPAGE_only	7	8	9	0.341282	2.750000	chr4	2860711	2860912	SINE|MIR|MIR	-	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.888889
adrenal_gland_male_adult_54_years	chr7	64989995	64990045	64990044	-	High_confidence	3	3	13	0.492962	3.251629	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.692308
adrenal_gland_male_adult_54_years	chr10	37726810	37726821	37726810	-	High_confidence	6	6	15	0.568803	3.056565	chr10	37726715	37727042	SINE|Alu|AluY	-	chr10	37726205	37726685	STRG.60358.1	-	37726205	37726685	0.666667
adrenal_gland_male_adult_54_years	chr5	25963826	25963839	25963826	+	High_confidence	9	9	28	1.061765	4.032303	chr5	25963846	25964173	LTR|ERV1|MER65-int	+	chr5	25963854	25964348	STRG.32294.1	+	25963854	25964348	0.535714
adrenal_gland_male_adult_54_years	chr2	188466526	188466537	188466526	+	RAMPAGE_only	2	2	7	0.265441	2.521641	chr2	188466571	188466837	LINE|L2|L2	+	chr2	188522737	188584309	GULP1|ENST00000476422.5	+	188522737,188529096,188541180,188569238,188570027,188584264	188522827,188529195,188541318,188569355,188570120,188584309	0.714286
adrenal_gland_male_adult_54_years	chrX	15404901	15404904	15404901	-	RAMPAGE_only	14	17	27	1.023845	3.565448	chrX	15404835	15405042	SINE|tRNA-RTE|MamSINE1	+	chrX	15384798	15407653	PIR|ENST00000492432.5	-	15384798,15390184,15397448,15407505	15385116,15390251,15397531,15407653	0.888889
airway_epithelial_cell	chr14	73463602	73463630	73463624	-	High_confidence	2	2	8	0.332633	2.521641	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73458849	73463635	AC005280.2|ENST00000647202.1	-	73458849,73462528,73463474	73459305,73462689,73463635	0.500000
airway_epithelial_cell	chr15	32613762	32613779	32613762	+	High_confidence	14	14	27	1.122638	3.179727	chr15	32613534	32613838	SINE|Alu|AluSg7	+	chr15	32613732	32615111	AC123768.2|ENST00000500941.2	+	32613732,32614108,32614739	32613998,32614202,32615111	0.814815
airway_epithelial_cell	chr19	38327934	38327998	38327962	+	RAMPAGE_only	3	3	19	0.790004	3.031116	chr19	38327903	38328211	LINE|L2|L2b	-	chr19	38319843	38329014	KCNK6|NM_004823.1	+	38319843,38326592,38327179	38320272,38326988,38329014	1.000000
airway_epithelial_cell	chr1	224504669	224504680	224504669	+	RAMPAGE_only	5	5	17	0.706846	2.780639	chr1	224504696	224504911	SINE|MIR|MIRb	+	chr1	224513687	224521221	CNIH3|ENST00000496372.1	+	224513687,224515740,224520999	224513780,224515876,224521221	0.882353
airway_epithelial_cell	chr19	46180850	46180876	46180862	-	High_confidence	21	21	96	3.991600	4.851178	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46163892	46180647	AC006262.2|ENST00000599127.1	-	46163892,46164577,46173933,46179485,46180604	46164216,46164651,46174052,46179537,46180647	0.583333
airway_epithelial_cell	chr11	123061128	123061328	123061296	-	High_confidence	12	12	209	8.690046	6.007419	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.966507
airway_epithelial_cell	chr15	30624357	30624368	30624357	+	High_confidence	6	6	18	0.748425	2.927451	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.722222
airway_epithelial_cell	chr11	121465839	121465857	121465839	+	RAMPAGE_only	2	2	7	0.291054	2.807355	chr11	121465836	121465864	DNA|hAT-Charlie|MER5B	-	chr11	121452379	121547024	SORL1|ENST00000532451.1	+	121452379,121470006,121478117,121488031,121490042,121496868,121513002,121514151,121520656,121522585,121522915,121532463,121543547,121545242,121546862	121452616,121470123,121478243,121488193,121490110,121497049,121513104,121514321,121520849,121522703,121522989,121532552,121543726,121545429,121547024	0.857143
airway_epithelial_cell	chr12	10362352	10362460	10362459	+	RAMPAGE_only	27	27	81	3.367913	5.490312	chr12	10362140	10362659	LTR|ERV1|LTR10C	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.703704
airway_epithelial_cell	chr17	6853886	6853939	6853928	+	High_confidence	8	8	38	1.580008	4.815623	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853940	6895482	ALOX12P2|ENST00000574271.5	+	6853940,6854213,6892002,6894317,6894883,6895095,6895342	6854060,6854435,6892075,6894519,6895006,6895199,6895482	0.657895
airway_epithelial_cell	chr5	42993238	42993271	42993239	-	High_confidence	3	6	14	0.582108	2.950212	chr5	42992907	42993217	SINE|Alu|AluSz	-	chr5	42985397	42993333	FLJ32255|NR_104643.1	-	42985397,42990838	42985662,42993333	0.928571
airway_epithelial_cell	chr7	6590246	6590279	6590246	+	High_confidence	4	4	25	1.039479	4.083856	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	1.000000
airway_epithelial_cell	chr5	83096128	83096153	83096152	+	RAMPAGE_only	24	28	47	1.954221	5.027889	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	0.914894
airway_epithelial_cell	chr2	166185025	166185037	166185031	+	RAMPAGE_only	164	171	427	17.754304	6.823880	chr2	166184665	166185205	LINE|L2|L2a	-	chr2	166149180	166294588	AC010127.1|ENST00000630020.2	+	166149180,166171386,166199638,166248194,166249342,166251833,166277087,166294564	166149572,166171558,166199818,166248276,166249384,166251912,166277247,166294588	0.576112
airway_epithelial_cell	chr5	75336495	75336515	75336514	+	High_confidence	8	10	25	1.039479	4.001823	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.800000
airway_epithelial_cell	chr16	4355592	4355593	4355592	-	High_confidence	204	204	204	8.482150	4.843722	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.931373
airway_epithelial_cell	chr19	55280196	55280202	55280199	-	High_confidence	12	14	41	1.704746	3.226233	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
airway_epithelial_cell	chr17	14776966	14776986	14776985	-	High_confidence	7	7	18	0.748425	3.454822	chr17	14776695	14777201	LTR|ERVL-MaLR|MLT1F	+	chr17	14769051	14776916	MSTRG.13440.2	-	14769051,14776732	14770246,14776916	0.888889
airway_epithelial_cell	chr6	56999189	56999207	56999189	-	RAMPAGE_only	5	5	11	0.457371	3.095795	chr6	56998981	56999851	LINE|L1|L1PA15-16	+	chr6	56640466	56954628	DST|ENST00000449297.6	-	56640466,56641946,56642409,56645865,56646086,56648569,56650925,56651131,56670640,56699652,56701887,56704279,56735227,56851396,56900420,56953784,56954406	56640605,56642101,56642503,56645993,56646182,56648689,56651032,56651244,56670807,56699745,56701965,56704369,56735289,56851604,56900621,56953819,56954628	0.818182
airway_epithelial_cell	chr1	116390239	116390299	116390239	+	RAMPAGE_only	4	5	27	1.122638	3.606015	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
airway_epithelial_cell	chr7	134527683	134527716	134527714	+	High_confidence	29	36	77	3.201596	5.378992	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527619	134537087	AKR1B10|ENST00000475559.1	+	134527619,134530642,134531907,134533003,134535616,134536708,134537050	134527977,134530810,134532024,134533081,134535663,134536772,134537087	0.740260
airway_epithelial_cell	chr2	27350389	27350390	27350389	-	RAMPAGE_only	14	14	21	0.873163	3.291393	chr2	27350219	27350401	DNA|hAT-Charlie|MER5A	+	chr2	27325848	27356492	GTF3C2|ENST00000359541.6	-	27325848,27327176,27328036,27328467,27328843,27329120,27329378,27333654,27333973,27335597,27335916,27336197,27337243,27337480,27337925,27341947,27342825,27343307,27356086	27326893,27327284,27328189,27328596,27328931,27329282,27329523,27333784,27333999,27335706,27336028,27336425,27337342,27337558,27338020,27342233,27343147,27343578,27356492	1.000000
airway_epithelial_cell	chr11	3477049	3477073	3477067	-	High_confidence	45	45	244	10.145317	5.575441	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3475808	3477083	MSTRG.4849.1	-	3475808,3476942	3476373,3477083	0.971311
airway_epithelial_cell	chr21	33931521	33931540	33931521	+	High_confidence	2	2	9	0.374213	2.947703	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931213	33971186	LINC00649|ENST00000400353.6	+	33931213,33945809,33969236	33931267,33945895,33971186	0.666667
airway_epithelial_cell	chr7	5068311	5068341	5068311	+	RAMPAGE_only	2	2	8	0.332633	2.521641	chr7	5068350	5069163	LINE|L1|L1ME3A	+	chr7	5045921	5069488	RBAK|ENST00000396912.1	+	5045921,5048032,5057294,5057683,5063694	5046396,5048091,5057421,5057779,5069488	0.875000
airway_epithelial_cell	chr7	74776791	74776797	74776796	+	High_confidence	38	40	58	2.411592	4.804308	chr7	74776760	74777011	SINE|Alu|AluJo	-	chr7	74776808	74785292	NCF1|ENST00000443956.7	+	74776808,74777266,74777553,74779081,74779256,74780779,74782938,74783524,74785181	74776853,74777347,74777701,74779157,74779422,74780835,74783061,74783632,74785292	0.982759
airway_epithelial_cell	chr22	50757212	50757252	50757247	+	High_confidence	15	16	62	2.577908	4.699770	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.854839
airway_epithelial_cell	chr10	6737372	6737433	6737414	+	High_confidence	50	50	188	7.816883	6.350083	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.914894
airway_epithelial_cell	chr12	104030726	104030727	104030726	+	High_confidence	193	193	223	9.272154	6.227667	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030728	104032486	MSTRG.7936.1	+	104030728,104031679	104031419,104032486	0.721973
airway_epithelial_cell	chr1	155058736	155058785	155058784	+	High_confidence	5	5	29	1.205796	4.254196	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.931034
airway_epithelial_cell	chr5	119420439	119420465	119420440	+	RAMPAGE_only	4	7	14	0.582108	3.085055	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.928571
airway_epithelial_cell	chr10	84172094	84172095	84172094	-	High_confidence	114	118	129	5.363713	5.248347	chr10	84171986	84172465	LTR|ERV1|LTR2B	-	chr10	84167227	84172093	CERNA2|ENST00000647830.1	-	84167227,84171721	84168729,84172093	0.728682
airway_epithelial_cell	chr1	93324874	93324879	93324878	-	High_confidence	3	4	8	0.332633	2.807355	chr1	93324761	93324840	LINE|CR1|L3b	-	chr1	93264646	93324691	CCDC18-AS1|ENST00000415150.5	-	93264646,93305387,93315148,93318167,93324634	93264772,93305470,93315269,93318228,93324691	0.500000
airway_epithelial_cell	chr13	45206668	45206669	45206668	+	High_confidence	5	5	7	0.291054	2.807355	chr13	45206646	45206717	SINE|MIR|MIRb	+	chr13	45206354	45267333	GTF2F2|ENST00000494087.5	+	45206354,45252870,45267232	45207505,45252970,45267333	1.000000
airway_epithelial_cell	chr8	100919899	100920011	100919954	-	RAMPAGE_only	7	7	41	1.704746	4.470612	chr8	100919701	100920019	LTR|ERV1|MER34B-int	-	chr8	100918575	100950571	YWHAZ|NM_001135702.1	-	100918575,100923954,100924134,100924915,100948595,100950405	100920752,100924050,100924298,100925039,100948900,100950571	1.000000
airway_epithelial_cell	chr1	209429204	209429340	209429271	+	High_confidence	44	53	470	19.542208	5.896802	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.889362
airway_epithelial_cell	chr3	194486631	194486632	194486631	-	High_confidence	7	7	8	0.332633	2.521641	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.875000
airway_epithelial_cell	chr3	9987139	9987163	9987162	+	High_confidence	9	9	20	0.831583	3.431624	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9987214	10003097	EMC3-AS1|ENST00000440568.1	+	9987214,9987814,9988711,10002716	9987264,9987905,9988747,10003097	0.700000
airway_epithelial_cell	chr11	72111462	72111497	72111496	-	High_confidence	7	9	22	0.914742	3.689704	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.954545
airway_epithelial_cell	chr2	71050189	71050214	71050200	+	RAMPAGE_only	16	18	62	2.577908	3.807458	chr2	71048568	71050605	LTR|ERV1|HERVE-int	+	chr2	71055526	71056003	OR7E62P|ENST00000456741.1	+	71055526	71056003	0.806452
airway_epithelial_cell	chr10	122127024	122127025	122127024	+	High_confidence	19	19	19	0.790004	3.826875	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.736842
airway_epithelial_cell	chr22	37849301	37849322	37849317	-	High_confidence	59	59	179	7.442671	5.183428	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.960894
airway_epithelial_cell	chr15	34588450	34588453	34588450	-	RAMPAGE_only	8	12	20	0.831583	3.584184	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34379067	34583664	MSTRG.10446.1	-	34379067,34381700,34381967,34382150,34382385,34382796,34383440,34383745,34383960,34385047,34385253,34385426,34385739,34386624,34389643,34391122,34391352,34398633,34399154,34400711,34404916,34406673,34407523,34435382,34437397,34583543	34381613,34381856,34382068,34382251,34382529,34383053,34383528,34383853,34384047,34385157,34385338,34385474,34385778,34387952,34389768,34391265,34391426,34398729,34399203,34400759,34405055,34406870,34407735,34435471,34437442,34583664	0.650000
airway_epithelial_cell	chr4	102431179	102431180	102431179	-	High_confidence	10	10	12	0.498950	2.855389	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	1.000000
airway_epithelial_cell	chr17	59892716	59892753	59892716	-	High_confidence	15	17	56	2.328433	5.157394	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.910714
airway_epithelial_cell	chr10	103746763	103746793	103746763	+	High_confidence	2	2	11	0.457371	2.721928	chr10	103746609	103747070	LINE|L2|L2b	+	chr10	103746778	103755409	SH3PXD2A-AS1|NR_038940.1	+	103746778,103749781,103753843	103747096,103749920,103755409	0.636364
airway_epithelial_cell	chr7	55210285	55210349	55210348	+	RAMPAGE_only	4	4	18	0.748425	3.572431	chr7	55210374	55210539	DNA|hAT-Charlie|MER5B	+	chr7	55019150	55211628	MSTRG.29000.8	+	55019150,55077849,55081370,55142285,55143304,55146605,55151293,55152545,55154010,55155829,55156532,55156758,55157662,55160138,55161498,55163732,55165279,55171174,55172982,55173920,55174721,55181292,55191718,55192765,55198716,55200315,55201187,55201734,55202516,55205255	55019365,55078030,55081543,55142437,55143488,55146740,55151362,55152664,55154152,55155946,55156659,55156832,55157753,55160338,55161631,55163823,55165437,55171213,55173124,55174043,55174820,55181478,55191874,55192841,55198863,55200413,55201355,55201782,55202625,55211628	1.000000
airway_epithelial_cell	chr11	120128727	120128728	120128727	-	High_confidence	12	12	13	0.540529	3.084963	chr11	120128621	120128702	LINE|L2|L2a	-	chr11	120112409	120128913	TRIM29|ENST00000529044.5	-	120112409,120115337,120118222,120120572,120122953,120125690,120127335,120128399,120128647	120112476,120115414,120118321,120120665,120123055,120125889,120127569,120128495,120128913	0.769231
airway_epithelial_cell	chr4	165476670	165476694	165476693	+	RAMPAGE_only	4	5	15	0.623688	3.324863	chr4	165476024	165476747	LTR|ERV1|MER50	-	chr4	165378941	165498320	CPE|ENST00000402744.8	+	165378941,165464389,165467687,165482241,165484421,165487437,165493170,165495558,165497511	165379528,165464586,165467855,165482359,165484604,165487577,165493270,165495677,165498320	0.933333
airway_epithelial_cell	chr20	50172566	50172590	50172571	+	High_confidence	4	4	12	0.498950	3.084963	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.583333
airway_epithelial_cell	chr10	84171958	84171985	84171958	-	High_confidence	3	3	8	0.332633	2.521641	chr10	84171609	84171986	LTR|ERV1|Harlequin-int	-	chr10	84167227	84172076	HOST2|NR_134505.1	-	84167227,84171721	84168729,84172076	0.750000
airway_epithelial_cell	chr5	149125501	149125519	149125501	+	High_confidence	8	8	17	0.706846	3.577820	chr5	149125341	149125788	LTR|ERVL|LTR33	-	chr5	149125500	149125819	MSTRG.26412.1	+	149125500	149125819	0.529412
airway_epithelial_cell	chr3	197299271	197299321	197299282	-	High_confidence	4	4	25	1.039479	4.403856	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197042559	197299272	DLG1|NM_001290983.1	-	197042559,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299272	0.920000
airway_epithelial_cell	chr6	79631366	79631367	79631366	+	High_confidence	5	5	8	0.332633	2.750000	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
airway_epithelial_cell	chr1	158146895	158146896	158146895	-	High_confidence	25	25	27	1.122638	3.617797	chr1	158146568	158147206	LTR|ERVL|MER70B	-	chr1	158132039	158146929	LINC01704|ENST00000635685.1	-	158132039,158146766	158132656,158146929	0.851852
airway_epithelial_cell	chr22	24011715	24011716	24011715	+	High_confidence	5	5	7	0.291054	2.521641	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
airway_epithelial_cell	chr12	121993539	121993598	121993583	+	RAMPAGE_only	2	2	15	0.623688	2.985228	chr12	121993005	121993967	Retroposon|SVA|SVA_F	+	chr12	122001703	122003927	WDR66|ENST00000545988.1	+	122001703,122003651	122001919,122003927	0.800000
airway_epithelial_cell	chr16	30354709	30354710	30354709	-	High_confidence	6	6	6	0.249475	2.584963	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	1.000000
airway_epithelial_cell	chr1	11058812	11058823	11058812	-	RAMPAGE_only	2	3	8	0.332633	2.521641	chr1	11058682	11058785	SINE|MIR|MIRc	-	chr1	11054588	11060024	SRM|ENST00000376957.6	-	11054588,11054961,11055780,11056010,11056603,11058799,11059224,11059776	11054885,11055084,11055926,11056094,11056757,11058892,11059345,11060024	0.875000
airway_epithelial_cell	chr1	6208681	6208682	6208681	-	High_confidence	134	135	135	5.613188	3.769843	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.977778
airway_epithelial_cell	chr19	35164163	35164229	35164228	+	High_confidence	3	3	17	0.706846	3.130718	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	1.000000
airway_epithelial_cell	chr15	67223153	67223154	67223153	-	RAMPAGE_only	19	20	26	1.081058	4.163856	chr15	67222907	67223177	LINE|L2|L2-3_Crp	+	chr15	67201672	67221202	AAGAB|ENST00000538028.1	-	67201672,67203547,67204043,67208561,67209461,67220488,67221038	67202898,67203597,67204148,67208658,67209544,67220540,67221202	0.769231
airway_epithelial_cell	chr19	48994931	48994932	48994931	+	RAMPAGE_only	6	8	8	0.332633	2.750000	chr19	48994647	48994932	SINE|Alu|AluSz	+	chr19	48993909	49009882	RUVBL2|ENST00000593570.5	+	48993909,48999318,49001348,49003278,49004276,49007017,49007301,49009775	48993923,48999373,49001590,49003334,49004418,49007147,49007368,49009882	0.750000
airway_epithelial_cell	chr9	6545484	6545494	6545484	-	RAMPAGE_only	4	4	10	0.415792	2.947703	chr9	6545170	6545645	DNA|TcMar-Tigger|Tigger3b	-	chr9	6532506	6541816	GLDC|ENST00000639461.1	-	6532506,6534707,6536063,6540050	6533160,6534788,6536236,6541816	0.900000
airway_epithelial_cell	chr10	63610313	63610334	63610333	+	RAMPAGE_only	3	4	7	0.291054	2.807355	chr10	63610367	63610583	LINE|L1|L1PA8	+	chr10	63521362	63625123	REEP3|ENST00000373758.4	+	63521362,63566337,63594777,63598023,63599169,63610186,63619654,63620812	63521577,63566410,63594854,63598144,63599283,63610334,63619800,63625123	1.000000
airway_epithelial_cell	chr9	127451050	127451128	127451104	-	High_confidence	10	10	40	1.663167	4.556752	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.950000
airway_epithelial_cell	chr12	46266488	46266516	46266515	-	High_confidence	9	9	32	1.330533	4.453881	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.906250
airway_epithelial_cell	chr11	34659807	34659892	34659891	+	RAMPAGE_only	7	10	51	2.120538	4.333903	chr11	34659791	34660003	DNA|hAT-Charlie|MER20	-	chr11	34632463	34663288	EHF|NM_001206616.1	+	34632463,34642627,34646438,34649018,34651541,34651736,34656907,34658532,34658831	34632652,34642727,34646684,34649081,34651610,34651805,34656970,34658728,34663288	1.000000
airway_epithelial_cell	chr3	9391827	9391828	9391827	-	RAMPAGE_only	6	7	7	0.291054	2.584963	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9385794	9397428	THUMPD3-AS1|ENST00000521609.5	-	9385794,9388086,9390279,9391426,9397423	9385923,9388127,9390497,9391826,9397428	0.571429
airway_epithelial_cell	chr4	74449080	74449146	74449135	+	RAMPAGE_only	15	16	54	2.245275	4.856196	chr4	74449070	74449168	LINE|L1|L1MEf	+	chr4	74445301	74455005	AREG|ENST00000502307.1	+	74445301,74446533,74449046,74450379,74454758	74445406,74446782,74449248,74450532,74455005	0.648148
airway_epithelial_cell	chr5	53601811	53601826	53601811	+	RAMPAGE_only	21	22	72	2.993700	4.888513	chr5	53601604	53601895	DNA|TcMar-Tigger|MER44B	+	chr5	53560674	53683338	NDUFS4|ENST00000506765.1	+	53560674,53603451,53646232,53683117	53560760,53603530,53646405,53683338	0.583333
airway_epithelial_cell	chr12	10363964	10363974	10363964	+	High_confidence	53	54	84	3.492650	5.239374	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.809524
airway_epithelial_cell	chr4	107970714	107970715	107970714	+	RAMPAGE_only	9	9	9	0.374213	3.169925	chr4	107970516	107970823	SINE|Alu|AluJb	-	chr4	108620557	108625370	RPL34|NM_001319236.1	+	108620557,108621950,108622104,108622514,108625127	108620600,108622024,108622204,108622618,108625370	1.000000
airway_epithelial_cell	chr16	50396868	50396897	50396877	-	RAMPAGE_only	41	50	102	4.241075	5.596205	chr16	50396540	50397080	LTR|ERVL|MLT2A2	-	chr16	50390915	50395133	LINC02178|ENST00000566876.1	-	50390915,50394934	50391141,50395133	0.578431
airway_epithelial_cell	chr11	4129081	4129117	4129116	+	RAMPAGE_only	6	6	20	0.831583	3.621928	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.950000
airway_epithelial_cell	chr12	14665612	14665645	14665612	+	High_confidence	2	2	11	0.457371	3.121928	chr12	14665652	14665749	LINE|L2|L2a	+	chr12	14665654	14757963	AC010168.1|ENST00000501178.2	+	14665654,14665858,14672265,14718034,14757594	14665697,14666013,14672314,14718075,14757963	0.818182
airway_epithelial_cell	chr3	50816069	50816102	50816069	+	RAMPAGE_only	5	5	16	0.665267	3.452820	chr3	50815749	50816183	LTR|ERV1|LTR54B	-	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.812500
airway_epithelial_cell	chr20	18794063	18794078	18794077	+	High_confidence	9	9	20	0.831583	3.884184	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
airway_epithelial_cell	chr22	35896684	35896711	35896684	-	RAMPAGE_only	11	11	35	1.455271	4.675698	chr22	35896673	35896791	LINE|L2|L2	+	chr22	35743982	35938897	RBFOX2|ENST00000359369.8	-	35743982,35745922,35746472,35750425,35756104,35759887,35761201,35761414,35765422,35768256,35778024,35781599,35809779,35938846	35744249,35745995,35746561,35750457,35756144,35760020,35761294,35761468,35765483,35768349,35778078,35781743,35810004,35938897	0.914286
airway_epithelial_cell	chr3	58526765	58526766	58526765	-	High_confidence	12	12	13	0.540529	3.418296	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	0.923077
airway_epithelial_cell	chr13	51576978	51576997	51576994	+	RAMPAGE_only	20	20	76	3.160017	5.454971	chr13	51576916	51577173	LINE|L2|L2a	-	chr13	51584347	51762035	WDFY2|NM_052950.3	+	51584347,51660595,51675169,51703595,51719197,51727677,51739048,51751309,51755357,51756331,51758191,51759739	51584824,51660663,51675243,51703650,51719348,51727790,51739175,51751415,51755459,51756462,51758300,51762035	0.802632
airway_epithelial_cell	chr5	133064408	133064445	133064424	+	RAMPAGE_only	6	6	19	0.790004	3.536887	chr5	133064223	133064516	SINE|Alu|AluSx	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
airway_epithelial_cell	chr17	40477233	40477363	40477324	-	RAMPAGE_only	13	13	92	3.825283	5.301783	chr17	40477275	40477331	DNA|hAT-Charlie|MER5A	-	chr17	40475827	40480875	TNS4|ENST00000394072.7	-	40475827,40478306,40478579,40480699	40477729,40478333,40478648,40480875	1.000000
airway_epithelial_cell	chr7	116507431	116507441	116507434	+	RAMPAGE_only	4	4	14	0.582108	3.521641	chr7	116507390	116507671	SINE|Alu|AluSc	+	chr7	116500043	116508541	CAV2|NM_001206748.1	+	116500043,116505970	116500447,116508541	1.000000
airway_epithelial_cell	chr22	36481985	36482026	36482025	-	High_confidence	5	6	22	0.914742	2.931721	chr22	36481702	36481993	SINE|Alu|AluSc	-	chr22	36467035	36482030	TXN2|ENST00000216185.6	-	36467035,36476732,36480574,36481563	36467917,36476856,36480837,36482030	0.909091
airway_epithelial_cell	chr3	149284778	149284779	149284778	+	High_confidence	7	7	7	0.291054	2.521641	chr3	149283837	149285090	LTR|ERV1|LTR12C	+	chr3	149284781	149333653	AC093001.1|ENST00000489011.1	+	149284781,149333503	149285182,149333653	0.571429
airway_epithelial_cell	chr2	113078001	113078003	113078002	+	RAMPAGE_only	26	42	44	1.829483	4.963746	chr2	113077919	113078146	LINE|L2|L2c	-	chr2	113111115	113134013	IL1RN|ENST00000409052.5	+	113111115,113112999,113120065,113121447,113127688,113129575,113131044,113132655,113133602	113111199,113113114,113120128,113121618,113127740,113129664,113131157,113133460,113134013	0.704545
airway_epithelial_cell	chr16	63618044	63618045	63618044	-	High_confidence	9	12	14	0.582108	3.324863	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63531232	63618044	AC138305.1|ENST00000563855.1	-	63531232,63532816,63617692	63531304,63532931,63618044	0.571429
airway_epithelial_cell	chr11	12989543	12989546	12989543	-	High_confidence	282	349	647	26.901721	7.440950	chr11	12989406	12989730	LTR|ERVL-MaLR|THE1D	-	chr11	12959681	12989537	MSTRG.5059.1	-	12959681,12979316,12989455	12962763,12980909,12989537	0.663060
airway_epithelial_cell	chr1	7913248	7913268	7913248	-	RAMPAGE_only	49	49	97	4.033179	5.123707	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.567010
airway_epithelial_cell	chr9	39809803	39809859	39809858	-	High_confidence	11	15	33	1.372113	3.779797	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.848485
airway_epithelial_cell	chr12	10361115	10361116	10361115	-	High_confidence	6	6	6	0.249475	2.584963	chr12	10360929	10361561	LTR|ERV1|LTR9B	-	chr12	10358463	10361045	LINC02598|ENST00000535911.1	-	10358463,10360583	10358563,10361045	0.833333
airway_epithelial_cell	chr8	75324289	75324332	75324331	-	High_confidence	3	3	9	0.374213	2.947703	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223702	75324741	CASC9|ENST00000522183.1	-	75223702,75324564	75224358,75324741	0.666667
airway_epithelial_cell	chr14	40954688	40954706	40954700	+	High_confidence	11	11	32	1.330533	3.774397	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954897	40975877	LINC02315|ENST00000515218.2	+	40954897,40962789,40974339,40975340	40954952,40962842,40974390,40975877	0.531250
airway_epithelial_cell	chr3	69237176	69237188	69237187	-	RAMPAGE_only	8	13	37	1.538429	4.736216	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69197714	69320944	FRMD4B|ENST00000470070.6	-	69197714,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69320888	69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69320944	0.513514
airway_epithelial_cell	chr12	8681676	8681677	8681676	+	High_confidence	32	32	41	1.704746	4.807009	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.878049
airway_epithelial_cell	chr7	107580245	107580267	107580264	+	High_confidence	738	739	3744	155.672400	7.501224	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.868056
airway_epithelial_cell	chr19	9700673	9700674	9700673	-	High_confidence	29	36	37	1.538429	4.572431	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.729730
airway_epithelial_cell	chr1	54852047	54852066	54852047	-	RAMPAGE_only	7	7	19	0.790004	3.281036	chr1	54851851	54852077	SINE|MIR|MIRb	-	chr1	54849663	54886890	DHCR24|ENST00000648712.1	-	54849663,54853433,54854036,54865302,54871349,54875092,54875941,54879059,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54879319,54883773,54886890	0.947368
airway_epithelial_cell	chr13	29647319	29647361	29647360	+	High_confidence	12	12	25	1.039479	4.023465	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.840000
airway_epithelial_cell	chr17	41871712	41871833	41871808	-	RAMPAGE_only	6	6	85	3.534229	5.528287	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.541176
airway_epithelial_cell	chr11	128095841	128095999	128095994	+	High_confidence	19	25	117	4.864763	5.836560	chr11	128093965	128096590	LTR|ERVL|ERVL-B4-int	+	chr11	128096041	128183212	AP000904.1|ENST00000649115.1	+	128096041,128101241,128167171,128168182,128169212,128169593,128174634,128180459,128182800	128096099,128101384,128167255,128168371,128169346,128169830,128174797,128180623,128183212	0.752137
airway_epithelial_cell	chr17	76564125	76564173	76564167	+	RAMPAGE_only	3	3	16	0.665267	3.189898	chr17	76564146	76564423	SINE|Alu|AluSx	-	chr17	76557791	76565279	SNHG16|ENST00000590435.5	+	76557791,76558944,76561287,76563118,76563972	76557857,76559043,76561398,76563482,76565279	0.937500
airway_epithelial_cell	chr2	58113211	58113212	58113211	+	High_confidence	10	10	12	0.498950	2.918296	chr2	58113028	58113330	SINE|Alu|AluSg	+	chr2	58112904	58159784	MSTRG.18060.13	+	58112904,58123100,58131807,58135140,58139665,58146315,58159348	58113474,58123233,58131928,58135199,58139832,58146474,58159784	0.833333
airway_epithelial_cell	chr12	21662312	21662313	21662312	+	High_confidence	37	40	52	2.162117	4.529667	chr12	21661347	21662731	LTR|ERV1|LTR12C	+	chr12	21662312	21760032	AC010197.1|ENST00000541860.1	+	21662312,21759913	21662771,21760032	0.826923
airway_epithelial_cell	chr16	66408519	66408556	66408519	+	High_confidence	12	12	29	1.205796	4.418157	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66412135	LINC00920|ENST00000499966.1	+	66408523,66410279	66408814,66412135	0.793103
airway_epithelial_cell	chr10	65570509	65570522	65570521	+	High_confidence	15	29	89	3.700546	5.374387	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.730337
airway_epithelial_cell	chr9	116838440	116838454	116838440	+	High_confidence	7	7	16	0.665267	2.727217	chr9	116838426	116838730	SINE|Alu|AluSq2	-	chr9	116838227	116876827	MSTRG.32521.2	+	116838227,116841428,116870198,116876607	116839021,116841517,116870244,116876827	0.750000
airway_epithelial_cell	chr1	9894223	9894252	9894251	-	RAMPAGE_only	9	9	30	1.247375	4.280395	chr1	9894071	9894347	LINE|L1|L1MC4	-	chr1	9850449	9893237	CTNNBIP1|ENST00000377258.5	-	9850449,9871186,9871968,9877904,9893008	9850776,9871277,9872088,9877989,9893237	0.766667
airway_epithelial_cell	chr3	189309857	189309889	189309866	+	High_confidence	4	4	16	0.665267	3.452820	chr3	189309787	189309871	LINE|RTE-BovB|MamRTE1	+	chr3	189309918	189323572	MSTRG.23571.16	+	189309918,189310385,189320625	189310177,189310539,189323572	0.500000
airway_epithelial_cell	chr18	30991765	30991851	30991809	-	RAMPAGE_only	5	5	45	1.871063	4.694646	chr18	30991406	30991833	LTR|ERV1|MER65C	-	chr18	30990007	31042741	DSC3|ENST00000360428.8	-	30990007,30996790,31001617,31004141,31006906,31008015,31008268,31018070,31018665,31022335,31024348,31025759,31029508,31030972,31032191,31042591	30994372,30997048,31001739,31004366,31007131,31008158,31008525,31018256,31018800,31022502,31024493,31025915,31029628,31031172,31032276,31042741	1.000000
airway_epithelial_cell	chr1	100268280	100268290	100268280	+	RAMPAGE_only	6	6	14	0.582108	2.896292	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	1.000000
airway_epithelial_cell	chr1	46181621	46181644	46181643	+	RAMPAGE_only	18	19	50	2.078958	4.963856	chr1	46181615	46181833	LINE|L2|L2b	-	chr1	46183432	46185308	TSPAN1|ENST00000464786.5	+	46183432,46184190,46184593,46184784,46184959,46185224	46183683,46184397,46184668,46184883,46185115,46185308	0.760000
airway_epithelial_cell	chr4	6673446	6673447	6673446	+	High_confidence	140	140	140	5.821083	5.522769	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	1.000000
airway_epithelial_cell	chr19	9140390	9140428	9140427	+	High_confidence	33	33	152	6.320033	6.354808	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.835526
airway_epithelial_cell	chr12	109851800	109852135	109851939	-	RAMPAGE_only	16	18	218	9.064258	6.141963	chr12	109851848	109852148	SINE|Alu|AluSq2	-	chr12	109850942	109880488	GLTP|NM_016433.3	-	109850942,109855618,109857525,109858682,109880271	109852737,109855769,109857659,109858741,109880488	0.981651
airway_epithelial_cell	chr3	121731455	121731475	121731455	-	RAMPAGE_only	13	13	55	2.286854	4.801003	chr3	121731351	121731515	SINE|Alu|AluSc8	-	chr3	121697026	121729950	GOLGB1|ENST00000489400.1	-	121697026,121699811,121702480,121714860,121716736,121718387,121726912,121729187,121729864	121698929,121699885,121702595,121714976,121717139,121718501,121727041,121729340,121729950	0.636364
airway_epithelial_cell	chr17	35432475	35432500	35432499	-	High_confidence	9	9	18	0.748425	3.852169	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.944444
airway_epithelial_cell	chr21	27722316	27722355	27722333	+	High_confidence	2	3	11	0.457371	3.321928	chr21	27721678	27722360	LTR|ERV1|MER50	-	chr21	27722378	27751233	LINC00113|NR_024357.2	+	27722378,27743392,27745817,27751071	27722413,27743504,27746032,27751233	0.818182
airway_epithelial_cell	chr1	181044804	181044864	181044804	+	RAMPAGE_only	8	11	53	2.203696	5.056021	chr1	181044850	181045171	DNA|hAT-Tip100|MER115	+	chr1	181034002	181061938	MR1|ENST00000367580.5	+	181034002,181049051,181050010,181052234,181053572,181055224	181034074,181049312,181050286,181052510,181053677,181061938	0.943396
airway_epithelial_cell	chr1	16981569	16981642	16981569	-	High_confidence	42	43	229	9.521629	5.537982	chr1	16981567	16981905	LTR|ERV1|LTR64	+	chr1	16974501	16981586	MFAP2|NM_001135247.1	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16981513	16975023,16975342,16975730,16976545,16976794,16976923,16977195,16978314,16981586	0.965066
airway_epithelial_cell	chr4	142474346	142474349	142474346	-	High_confidence	4	4	9	0.374213	2.750000	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.555556
airway_epithelial_cell	chr12	121960749	121960750	121960749	+	RAMPAGE_only	6	6	9	0.374213	2.947703	chr12	121960789	121960876	LINE|L2|L2b	+	chr12	121961993	121972033	MSTRG.8212.23	+	121961993,121966954,121968005,121968885	121962162,121967069,121968169,121972033	1.000000
airway_epithelial_cell	chr11	43881157	43881167	43881166	+	High_confidence	4	4	8	0.332633	2.521641	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.875000
airway_epithelial_cell	chr8	99891995	99892057	99892056	-	RAMPAGE_only	19	19	69	2.868963	4.404473	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
airway_epithelial_cell	chr18	23881968	23882030	23882029	+	RAMPAGE_only	16	18	74	3.076858	5.036663	chr18	23882065	23882312	LINE|L1|L1MB7	+	chr18	23884772	23931559	LAMA3|ENST00000586751.5	+	23884772,23890010,23894297,23894906,23898737,23898953,23899287,23901126,23903008,23903932,23904552,23905521,23907549,23907755,23909152,23912710,23914409,23914697,23915288,23916550,23920934,23921451,23928122,23928624,23931061,23931419	23884853,23890117,23894348,23895058,23898848,23899065,23899455,23901323,23903125,23904087,23904694,23905624,23907666,23907935,23909295,23912881,23914561,23914860,23915422,23916695,23921054,23921585,23928240,23928765,23931201,23931559	0.986486
airway_epithelial_cell	chr9	129488843	129488905	129488856	+	High_confidence	11	11	42	1.746325	4.393899	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.976190
airway_epithelial_cell	chr22	21001579	21001611	21001610	-	High_confidence	4	4	19	0.790004	3.683542	chr22	21001557	21001648	SINE|MIR|MIR	-	chr22	21000271	21001518	THAP7|ENST00000488975.1	-	21000271,21000646,21001255	21000432,21000729,21001518	0.578947
airway_epithelial_cell	chr1	86424340	86424341	86424340	+	High_confidence	9	9	13	0.540529	3.022055	chr1	86424338	86424378	LINE|RTE-BovB|MamRTE1	+	chr1	86424085	86456558	CLCA2|ENST00000370565.4	+	86424085,86425338,86428417,86430861,86432368,86434517,86438875,86440147,86441436,86443786,86447507,86450562,86453368,86455084	86424433,86425476,86428568,86430970,86432528,86434745,86439106,86440325,86441543,86444011,86447778,86450733,86453602,86456558	0.923077
airway_epithelial_cell	chr17	2667179	2667195	2667179	+	High_confidence	3	4	6	0.249475	2.584963	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	1.000000
airway_epithelial_cell	chr12	109885820	109885852	109885820	+	RAMPAGE_only	7	7	21	0.873163	3.584184	chr12	109885780	109885918	SINE|Alu|AluJr	-	chr12	109900273	109918069	TCHP|NM_001143852.1	+	109900273,109903026,109903936,109904736,109906571,109907525,109908585,109908870,109911062,109912990,109914441,109915402,109916590	109900426,109903214,109904147,109904793,109906640,109907699,109908698,109908937,109911235,109913072,109914627,109915546,109918069	0.666667
airway_epithelial_cell	chr1	114705707	114705758	114705707	-	RAMPAGE_only	2	2	17	0.706846	3.292770	chr1	114705629	114705788	SINE|Alu|AluSx3	-	chr1	114704463	114716894	NRAS|NM_002524.4	-	114704463,114708153,114708530,114709568,114713799,114716049,114716657	114708050,114708192,114708654,114709728,114713978,114716177,114716894	1.000000
airway_epithelial_cell	chr2	20217662	20217670	20217662	-	RAMPAGE_only	5	5	9	0.374213	2.750000	chr2	20217521	20217659	SINE|MIR|MIRc	-	chr2	20204001	20223388	SDC1|ENST00000482879.5	-	20204001,20205342,20223202	20204291,20205424,20223388	0.555556
airway_epithelial_cell	chr9	4620426	4620436	4620427	-	RAMPAGE_only	6	9	18	0.748425	3.947703	chr9	4620379	4620545	DNA|hAT-Charlie|MER5A1	+	chr9	4600519	4666347	SPATA6L|ENST00000381890.9	-	4600519,4605346,4622407,4625326,4629090,4635274,4646486,4656040,4661898,4666211	4600809,4605440,4622510,4625566,4629168,4635399,4646528,4656089,4662036,4666347	0.611111
airway_epithelial_cell	chr2	71417057	71417126	71417125	+	RAMPAGE_only	4	4	20	0.831583	3.441446	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	1.000000
airway_epithelial_cell	chr4	142474407	142474421	142474407	-	High_confidence	64	68	111	4.615288	5.736525	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.819820
airway_epithelial_cell	chr5	126600248	126600249	126600248	+	High_confidence	72	75	82	3.409492	5.387815	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	0.975610
airway_epithelial_cell	chr19	49086546	49086547	49086546	+	High_confidence	4	4	6	0.249475	2.584963	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.500000
airway_epithelial_cell	chr1	88887267	88887322	88887267	-	RAMPAGE_only	2	2	21	0.873163	3.535175	chr1	88886926	88887218	SINE|Alu|AluSx1	-	chr1	88853223	88891496	GTF2B|ENST00000448623.5	-	88853223,88857372,88859881,88860139,88863980,88887260,88891482	88853346,88857487,88860011,88860286,88864114,88887367,88891496	0.952381
airway_epithelial_cell	chr19	16102072	16102612	16102289	+	RAMPAGE_only	44	49	1269	52.763963	5.309445	chr19	16102068	16102357	SINE|Alu|AluSz	+	chr19	16088710	16102946	TPM4|ENST00000591645.2	+	16088710,16089044,16093535,16093683,16101263	16088849,16089120,16093598,16093753,16102946	0.996060
airway_epithelial_cell	chr4	75127193	75127252	75127224	-	RAMPAGE_only	84	114	504	20.955900	5.535161	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.980159
airway_epithelial_cell	chr8	32927967	32927984	32927976	+	High_confidence	258	272	632	26.278033	6.814458	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927933	33044802	MSTRG.30523.1	+	32927933,33041634,33044366	32928093,33041771,33044802	0.914557
airway_epithelial_cell	chr11	14337098	14337157	14337156	-	RAMPAGE_only	17	17	78	3.243175	5.543424	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14279396	14342094	RRAS2|ENST00000531807.5	-	14279396,14281601,14294470,14294759,14295767,14341809	14279424,14281720,14294579,14294862,14295855,14342094	0.692308
airway_epithelial_cell	chr1	39026130	39026151	39026130	+	High_confidence	2	3	7	0.291054	2.807355	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
airway_epithelial_cell	chr4	39032917	39032921	39032920	-	High_confidence	7	7	15	0.623688	3.039149	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	39028374	39032720	TMEM156|ENST00000495029.1	-	39028374,39032225,39032641	39028597,39032443,39032720	0.600000
airway_epithelial_cell	chr8	53523855	53523863	53523855	-	High_confidence	2	3	6	0.249475	2.584963	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
airway_epithelial_cell	chr6	117442523	117442524	117442523	-	RAMPAGE_only	28	28	32	1.330533	3.468139	chr6	117442358	117442707	LTR|ERVL-MaLR|THE1B	-	chr6	117288299	117425855	ROS1|ENST00000368507.7	-	117288299,117300973,117308793,117310080,117311019,117317142,117318187,117319867,117321258,117324331,117326223,117329328,117337171,117341134,117341399,117342399,117344059,117352989,117356628,117357803,117359808,117360341,117362602,117365059,117365580,117366075,117379058,117383316,117385682,117386888,117387779,117389349,117393223,117394161,117394615,117396187,117396914,117403138,117404279,117409581,117414518,117416257,117418461,117425533	117288802,117301137,117308928,117310281,117311117,117317272,117318252,117320030,117321394,117324415,117326414,117329446,117337340,117341311,117341632,117342544,117344262,117353166,117356915,117358009,117360011,117360405,117362865,117365204,117365741,117366290,117379159,117383508,117385861,117386999,117387992,117389846,117393321,117394346,117394738,117396264,117397116,117403277,117404428,117409642,117414545,117416317,117418506,117425855	0.906250
airway_epithelial_cell	chr2	9307242	9307273	9307255	+	RAMPAGE_only	4	4	14	0.582108	3.324863	chr2	9307128	9307302	DNA|hAT-Charlie|MER5A	-	chr2	9323120	9358838	ASAP2|ENST00000641030.1	+	9323120,9327825,9334737,9335092,9336035,9344531,9344730,9350807,9356046,9356178,9358755	9323250,9327911,9334813,9335179,9336044,9344635,9344800,9350895,9356095,9356345,9358838	0.928571
airway_epithelial_cell	chr7	44619050	44619051	44619050	+	High_confidence	18	18	18	0.748425	3.794653	chr7	44618793	44619481	LTR|ERVL|MER21A	+	chr7	44619004	44675245	MSTRG.28959.9	+	44619004,44624316,44645326,44647443,44666735,44673786,44674410,44675177	44619046,44624565,44645518,44647534,44666851,44673941,44674557,44675245	0.666667
airway_epithelial_cell	chr12	122064308	122064328	122064308	+	RAMPAGE_only	5	5	18	0.748425	3.734522	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.666667
airway_epithelial_cell	chrX	120143500	120143501	120143500	+	RAMPAGE_only	18	18	21	0.873163	4.021928	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120036235	120146854	RHOXF1-AS1|ENST00000553843.5	+	120036235,120120851,120138997,120143722,120145637	120036532,120121139,120139119,120143900,120146854	0.952381
airway_epithelial_cell	chr3	121919314	121919328	121919322	+	RAMPAGE_only	24	24	64	2.661067	4.786768	chr3	121918873	121919737	LTR|ERV1|LTR27D	-	chr3	121927658	121928538	SLC15A2|ENST00000489957.1	+	121927658,121928420	121927839,121928538	0.562500
airway_epithelial_cell	chr2	73982163	73982169	73982163	-	High_confidence	49	49	119	4.947921	3.785910	chr2	73982060	73982404	LINE|L2|L2c	-	chr2	73957966	73981439	DGUOK-AS1|NR_104030.1	-	73957966,73981134	73958207,73981439	0.991597
airway_epithelial_cell	chr1	174874433	174874441	174874433	+	High_confidence	5	5	13	0.540529	3.238901	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874457	174958182	RABGAP1L|ENST00000478442.5	+	174874457,174877391,174957456,174957890	174874506,174877605,174957549,174958182	0.692308
airway_epithelial_cell	chr7	99410089	99410120	99410089	+	High_confidence	3	4	11	0.457371	2.646439	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.909091
airway_epithelial_cell	chr8	123178985	123178988	123178985	+	High_confidence	3	3	7	0.291054	2.807355	chr8	123179033	123179135	SINE|MIR|MIR3	+	chr8	123179113	123180719	FAM83A|ENST00000523412.1	+	123179113,123180131,123180341	123179137,123180229,123180719	0.714286
airway_epithelial_cell	chr16	68833979	68834056	68834019	+	RAMPAGE_only	6	6	32	1.330533	4.155652	chr16	68833960	68834253	SINE|Alu|AluJb	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.937500
airway_epithelial_cell	chr12	91179462	91179549	91179462	-	High_confidence	16	16	89	3.700546	5.705714	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.898876
airway_epithelial_cell	chr6	43013388	43013393	43013392	-	High_confidence	29	29	47	1.954221	4.873738	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
airway_epithelial_cell	chr8	106060475	106060494	106060493	-	High_confidence	4	5	17	0.706846	3.875000	chr8	106060473	106060807	LTR|ERVL|LTR18A	+	chr8	105784804	106060477	ZFPM2-AS1|ENST00000524045.6	-	105784804,105787066,105787448,105798324,106059080,106060380	105785217,105787221,105787596,105798442,106059136,106060477	0.647059
airway_epithelial_cell	chr1	32816886	32816907	32816906	+	High_confidence	5	5	17	0.706846	3.337175	chr1	32816717	32816919	LINE|L2|L2c	+	chr1	32816766	32826489	S100PBP|ENST00000530710.5	+	32816766,32825312,32826097	32816982,32825429,32826489	0.882353
airway_epithelial_cell	chr18	36805392	36805404	36805392	-	RAMPAGE_only	2	2	10	0.415792	2.725481	chr18	36805277	36805349	LINE|L2|L2b	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.500000
airway_epithelial_cell	chr12	10363706	10363707	10363706	+	High_confidence	148	151	212	8.814783	6.101494	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.886792
airway_epithelial_cell	chr9	39810023	39810099	39810033	-	High_confidence	20	20	65	2.702646	4.798314	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.923077
airway_epithelial_cell	chr3	9986887	9986916	9986898	+	High_confidence	14	15	80	3.326333	5.651808	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.612500
airway_epithelial_cell	chr6	2990742	2990755	2990754	-	RAMPAGE_only	5	5	18	0.748425	3.281036	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.888889
airway_epithelial_cell	chr10	46042633	46042644	46042633	-	RAMPAGE_only	2	2	7	0.291054	2.584963	chr10	46042478	46042671	LINE|L1|L1M5	+	chr10	46033304	46046269	MSMB|NM_002443.3	-	46033304,46038965,46039985,46046234	46033551,46039071,46040091,46046269	0.857143
airway_epithelial_cell	chr1	43525091	43525092	43525091	+	High_confidence	11	11	13	0.540529	3.392747	chr1	43524527	43525317	LINE|L2|L2c	-	chr1	43525186	43553519	PTPRF|ENST00000496043.5	+	43525186,43528656,43538197,43545030,43553491	43525257,43528756,43538277,43545166,43553519	0.769231
airway_epithelial_cell	chr3	57197096	57197110	57197096	+	RAMPAGE_only	3	3	11	0.457371	3.277613	chr3	57196989	57197284	SINE|Alu|AluYc	-	chr3	57227725	57278105	APPL1|ENST00000650354.1	+	57227725,57235565,57237491,57238044,57240464,57242100,57242855,57246075,57247394,57248192,57249359,57252268,57253681,57256956,57257245,57259027,57259844,57260116,57260627,57267741,57268397,57269540,57276303,57277792	57227937,57235664,57237551,57238116,57240552,57242142,57242914,57246222,57247477,57248351,57249548,57252311,57253738,57257051,57257428,57259080,57260019,57260153,57260774,57267792,57268487,57269751,57276459,57278105	0.818182
airway_epithelial_cell	chr7	64999443	64999444	64999443	-	RAMPAGE_only	17	17	18	0.748425	3.852169	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64990808	65006653	ERV3-1|ENST00000394323.2	-	64990808,65006540	64993414,65006653	0.611111
airway_epithelial_cell	chr10	103890285	103890316	103890285	-	RAMPAGE_only	12	13	25	1.039479	3.943465	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103892375	MSTRG.4491.2	-	103882554,103889071,103892296	103882841,103889144,103892375	0.960000
airway_epithelial_cell	chr10	122852351	122852352	122852351	-	RAMPAGE_only	5	6	8	0.332633	2.521641	chr10	122852085	122852506	LINE|L1|L1MCa	+	chr10	122832148	122850793	CUZD1|ENST00000368904.5	-	122832148,122833671,122834705,122836177,122836830,122837403,122839016,122841177,122845761,122849236,122850423	122832450,122833940,122835097,122836350,122837048,122837554,122839231,122841328,122846220,122849439,122850793	0.625000
airway_epithelial_cell	chr10	52454998	52455019	52454998	-	High_confidence	3	3	8	0.332633	2.500000	chr10	52454703	52455679	LINE|L2|L2a	+	chr10	52450873	52455272	LNCAROD|ENST00000435813.6	-	52450873,52454585,52455105	52451517,52454749,52455272	1.000000
airway_epithelial_cell	chr4	170226586	170226588	170226586	+	High_confidence	2	4	6	0.249475	2.584963	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.666667
airway_epithelial_cell	chr9	20658568	20658692	20658607	+	High_confidence	15	18	104	4.324233	5.486278	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658338	20995948	MSTRG.31687.2	+	20658338,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	0.586538
airway_epithelial_cell	chr1	200675044	200675057	200675056	+	RAMPAGE_only	67	70	104	4.324233	3.687894	chr1	200674973	200675322	LINE|L2|L2c	-	chr1	200669506	200694250	LOC101929224|NR_110787.1	+	200669506,200690308,200693752	200669622,200690430,200694250	0.951923
airway_epithelial_cell	chr2	222843163	222843189	222843163	+	RAMPAGE_only	8	8	17	0.706846	3.616875	chr2	222843050	222843319	LTR|ERVL-MaLR|MLT1K	-	chr2	222860933	222944639	ACSL3|ENST00000357430.7	+	222860933,222887829,222900673,222908732,222916318,222918045,222919063,222921279,222922707,222923077,222924455,222927016,222928861,222930620,222933165,222934529,222941496	222861258,222887888,222900780,222909150,222916496,222918155,222919202,222921430,222922831,222923149,222924595,222927189,222928936,222930812,222933280,222934687,222944639	0.705882
airway_epithelial_cell	chrX	283492	283509	283508	+	High_confidence	8	9	14	0.582108	3.467720	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.571429
airway_epithelial_cell	chr11	33696930	33696974	33696930	-	High_confidence	16	16	75	3.118438	5.915852	chr11	33696789	33697100	LINE|L2|L2a	+	chr11	33665219	33696701	AL049629.1|ENST00000534431.1	-	33665219,33669523,33670914,33696585	33665564,33669645,33670979,33696701	0.586667
airway_epithelial_cell	chr7	134432378	134432443	134432435	-	High_confidence	33	34	153	6.361613	5.010375	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.980392
airway_epithelial_cell	chr22	18149863	18149885	18149868	+	High_confidence	22	22	49	2.037379	4.070858	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
airway_epithelial_cell	chr5	168555419	168555456	168555455	-	RAMPAGE_only	2	2	6	0.249475	2.584963	chr5	168555251	168555542	SINE|Alu|AluSx	-	chr5	168548494	168579600	PANK3|ENST00000239231.6	-	168548494,168559031,168561392,168563888,168566012,168568645,168579255	168557621,168559157,168561516,168564065,168566266,168568998,168579600	1.000000
airway_epithelial_cell	chr14	39265954	39265982	39265954	+	High_confidence	9	9	21	0.873163	3.746439	chr14	39265902	39265967	LINE|RTE-BovB|MamRTE1	+	chr14	39265967	39350423	MIA2|ENST00000396165.8	+	39265967,39276933,39279336,39279448,39291018,39293270,39293999,39294924,39299863,39302128,39303477,39304290,39308448,39313339,39314738,39315682,39317943,39319208,39320927,39326863,39345903,39347712,39348742,39350097	39266527,39277065,39279358,39279537,39291096,39293381,39294071,39295029,39299986,39302249,39303524,39304381,39308587,39313441,39314799,39315718,39318011,39319291,39321056,39327022,39346026,39347771,39348977,39350423	0.952381
airway_epithelial_cell	chr3	37987981	37987994	37987981	+	High_confidence	8	8	25	1.039479	4.103465	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.760000
airway_epithelial_cell	chr15	45645859	45645903	45645895	+	RAMPAGE_only	8	9	28	1.164217	4.423252	chr15	45645871	45646155	DNA|hAT-Tip100|Arthur1C	+	chr15	45634739	45691294	SQRDL|NM_021199.3	+	45634739,45658906,45661954,45669927,45673606,45676100,45682477,45688336,45689038,45690972	45635108,45659157,45662125,45669981,45673801,45676310,45682661,45688404,45689217,45691294	0.964286
airway_epithelial_cell	chr5	77491273	77491285	77491284	-	High_confidence	2	2	7	0.291054	2.584963	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77453865	77491285	WDR41|ENST00000504895.5	-	77453865,77459061,77463094,77464760,77489456,77491192	77453928,77459124,77463226,77464809,77489572,77491285	0.714286
airway_epithelial_cell	chr1	209786942	209786999	209786994	-	RAMPAGE_only	6	6	23	0.956321	3.975418	chr1	209786991	209787231	SINE|Alu|AluJo	+	chr1	209785690	209806044	IRF6|ENST00000367021.7	-	209785690,209789666,209790494,209792268,209795289,209796347,209801239,209801971,209805946	209788644,209789785,209790887,209792427,209795418,209796552,209801416,209802043,209806044	0.913043
airway_epithelial_cell	chr1	51403428	51403432	51403428	-	RAMPAGE_only	2	2	7	0.291054	2.584963	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.857143
airway_epithelial_cell	chr2	174410322	174410412	174410371	+	High_confidence	41	41	199	8.274254	4.977804	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.939698
airway_epithelial_cell	chr11	5619724	5619725	5619724	+	High_confidence	5	8	8	0.332633	2.500000	chr11	5619688	5619999	SINE|Alu|AluSx1	-	chr11	5619763	5644398	TRIM34|ENST00000514226.5	+	5619763,5632254,5633803,5634630,5641166,5642405,5642816,5643143	5620023,5632754,5633899,5634861,5641189,5642506,5642843,5644398	1.000000
airway_epithelial_cell	chr6	149857186	149857214	149857202	-	RAMPAGE_only	5	5	22	0.914742	3.168233	chr6	149857081	149857249	LTR|ERV1|LTR8	+	chr6	149818797	149864026	LRP11|ENST00000239367.6	-	149818797,149826263,149836084,149837337,149842982,149853002,149863407	149820703,149826359,149836297,149837463,149843124,149853160,149864026	0.909091
airway_epithelial_cell	chr17	47067498	47067534	47067498	-	High_confidence	108	117	410	17.047458	5.719346	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.892683
airway_epithelial_cell	chr2	174410002	174410074	174410019	+	High_confidence	12	13	57	2.370013	4.720889	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410036	174428859	SCRN3|ENST00000548921.5	+	174410036,174422884,174424474,174427712	174410225,174423047,174424649,174428859	0.842105
airway_epithelial_cell	chr10	121842958	121842973	121842972	-	RAMPAGE_only	6	8	15	0.623688	3.378783	chr10	121842495	121844102	LINE|L1|L1MC3	+	chr10	121743194	121927938	ATE1|ENST00000423243.5	-	121743194,121790168,121836717,121841081,121870005,121899865,121902390,121910905,121913789,121922348,121924265,121927843	121743858,121790289,121836817,121841263,121870038,121899994,121902620,121911151,121913893,121922411,121924329,121927938	0.933333
airway_epithelial_cell	chr12	3215215	3215267	3215240	+	RAMPAGE_only	7	7	37	1.538429	4.794653	chr12	3215284	3215474	SINE|MIR|MIRc	+	chr12	3201176	3282108	TSPAN9|ENST00000407263.2	+	3201176,3278420,3278991,3280381,3281197,3281733	3201256,3278612,3279066,3280483,3281329,3282108	0.594595
airway_epithelial_cell	chr7	99208111	99208119	99208118	-	High_confidence	4	6	11	0.457371	3.321928	chr7	99208098	99208244	SINE|Alu|AluSx3	-	chr7	99173573	99207506	KPNA7|ENST00000327442.6	-	99173573,99177919,99181882,99184928,99188299,99193018,99195069,99196083,99203105,99207400	99173794,99178066,99182065,99185162,99188563,99193101,99195338,99196166,99203240,99207506	0.818182
airway_epithelial_cell	chr10	103181328	103181329	103181328	-	High_confidence	26	27	27	1.122638	4.315824	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103181320	MSTRG.4475.1	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857,103181184	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982,103181320	0.666667
airway_epithelial_cell	chr12	55716626	55716655	55716654	+	High_confidence	5	5	11	0.457371	2.663533	chr12	55716643	55716820	SINE|MIR|MIR3	+	chr12	55716530	55719703	BLOC1S1|ENST00000548556.1	+	55716530,55719090,55719498	55716717,55719223,55719703	1.000000
airway_epithelial_cell	chrX	16712889	16712923	16712889	-	High_confidence	7	7	27	1.122638	4.384517	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	1.000000
airway_epithelial_cell	chr5	33049393	33049423	33049422	-	High_confidence	5	5	10	0.415792	3.121928	chr5	33049026	33055088	LINE|L1|L1M2a	+	chr5	33023100	33049401	AC010343.3|ENST00000505339.1	-	33023100,33049234	33023327,33049401	0.500000
airway_epithelial_cell	chr3	73808585	73808586	73808585	+	High_confidence	4	4	7	0.291054	2.521641	chr3	73808390	73808744	LTR|ERVL-MaLR|THE1A	+	chr3	73808600	73902866	LINC02005|ENST00000498832.1	+	73808600,73869775,73878805,73902530	73808668,73869961,73878997,73902866	0.857143
airway_epithelial_cell	chr15	66354122	66354123	66354122	-	RAMPAGE_only	11	11	11	0.457371	3.095795	chr15	66354028	66355027	LINE|L2|L2a	+	chr15	66336383	66356685	TIPIN|ENST00000566524.5	-	66336383,66341149,66349059,66349314,66352128,66352814,66356638	66337181,66341356,66349123,66349437,66352207,66352955,66356685	1.000000
airway_epithelial_cell	chr4	89681469	89681505	89681504	+	High_confidence	158	175	255	10.602688	6.665919	chr4	89681260	89681677	LTR|ERV1|MER61C	+	chr4	89681514	89726752	MSTRG.24411.7	+	89681514,89691284,89719825,89726383	89681684,89691405,89720432,89726752	0.588235
airway_epithelial_cell	chr10	84172024	84172055	84172024	-	High_confidence	2	2	8	0.332633	3.000000	chr10	84171609	84171986	LTR|ERV1|Harlequin-int	-	chr10	84167227	84172076	HOST2|NR_134505.1	-	84167227,84171721	84168729,84172076	0.875000
airway_epithelial_cell	chr16	2757847	2757872	2757871	+	High_confidence	5	5	10	0.415792	2.641604	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.900000
airway_epithelial_cell	chr15	34988754	34988792	34988791	-	High_confidence	4	4	14	0.582108	2.931209	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.928571
airway_epithelial_cell	chr6	3083251	3083295	3083251	+	RAMPAGE_only	3	3	9	0.374213	2.500000	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.888889
airway_epithelial_cell	chr2	29114149	29114174	29114173	+	High_confidence	13	13	38	1.580008	4.414994	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.973684
airway_epithelial_cell	chr20	25296925	25296951	25296950	+	RAMPAGE_only	3	3	12	0.498950	3.251629	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	1.000000
airway_epithelial_cell	chr8	127218878	127218931	127218878	-	High_confidence	10	10	37	1.538429	4.794653	chr8	127218788	127218864	SINE|MIR|MIR	-	chr8	127185606	127218925	CASC19|ENST00000641523.1	-	127185606,127187784,127188044,127202041,127203162,127208605,127208856,127218809	127185770,127187884,127188115,127202152,127203220,127208682,127209717,127218925	0.540541
airway_epithelial_cell	chr17	14776805	14776829	14776817	-	High_confidence	3	3	12	0.498950	3.418296	chr17	14776695	14777201	LTR|ERVL-MaLR|MLT1F	+	chr17	14769051	14776916	MSTRG.13440.2	-	14769051,14776732	14770246,14776916	0.750000
airway_epithelial_cell	chr18	36807846	36807880	36807863	-	High_confidence	3	3	13	0.540529	3.251629	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.923077
airway_epithelial_cell	chr16	20676147	20676162	20676161	-	High_confidence	5	5	9	0.374213	3.169925	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.555556
airway_epithelial_cell	chr17	41628684	41628696	41628684	-	RAMPAGE_only	4	5	12	0.498950	3.251629	chr17	41628668	41628794	LINE|L2|L2c	+	chr17	41626535	41634106	KRT42P|ENST00000458343.2	-	41626535,41627886,41628354,41629075,41630418,41633815	41626628,41628106,41628469,41629237,41630630,41634106	0.500000
airway_epithelial_cell	chr8	116648817	116648917	116648874	-	RAMPAGE_only	3	3	26	1.081058	4.023465	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.961538
airway_epithelial_cell	chr7	158863386	158863410	158863386	+	RAMPAGE_only	4	4	20	0.831583	4.121928	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.850000
airway_epithelial_cell	chr2	3536862	3536877	3536867	-	High_confidence	3	4	13	0.540529	3.251629	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.615385
airway_epithelial_cell	chr15	82749702	82749703	82749702	+	RAMPAGE_only	16	17	21	0.873163	3.541446	chr15	82749521	82749958	LTR|ERVL-MaLR|MLT1C	+	chr15	82744222	82750289	AC105339.3|ENST00000558342.1	+	82744222,82749295	82744319,82750289	0.761905
airway_epithelial_cell	chr21	26405915	26405943	26405942	+	RAMPAGE_only	25	25	43	1.787904	4.803056	chr21	26405595	26406023	LTR|ERVL|LTR16	+	chr21	26390135	26471698	AP001596.1|ENST00000421771.1	+	26390135,26470750	26390265,26471698	0.511628
airway_epithelial_cell	chr2	201115977	201116034	201116018	+	High_confidence	3	3	10	0.415792	2.646439	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201176687	CFLAR|ENST00000309955.7	+	201116103,201129728,201133028,201135971,201140356,201145377,201149002,201149753,201160431,201163834	201116481,201130146,201133134,201136107,201140439,201145432,201149052,201149835,201160942,201176687	0.900000
airway_epithelial_cell	chr1	86745114	86745115	86745114	+	RAMPAGE_only	5	5	8	0.332633	2.750000	chr1	86745106	86745336	SINE|MIR|MIRb	+	chr1	86704575	86748184	SH3GLB1|ENST00000370558.8	+	86704575,86715723,86719506,86722539,86724312,86734601,86735078,86742207,86743127	86704971,86715865,86719635,86722673,86724405,86734691,86735179,86742436,86748184	1.000000
airway_epithelial_cell	chr5	53485023	53485062	53485031	+	RAMPAGE_only	9	9	41	1.704746	3.494528	chr5	53484969	53485042	LINE|RTE-BovB|MamRTE1	+	chr5	53480625	53487106	FST|ENST00000396947.7	+	53480625,53482879,53483503,53484068,53484996,53485686	53480876,53483071,53483722,53484293,53485227,53487106	0.853659
airway_epithelial_cell	chr2	218398232	218398233	218398232	+	High_confidence	8	8	8	0.332633	2.750000	chr2	218398216	218398343	SINE|MIR|MIRb	+	chr2	218398255	218404418	CTDSP1|ENST00000491064.5	+	218398255,218401563,218402113,218402348,218403034,218403231,218404296	218398332,218401712,218402215,218402405,218403127,218403417,218404418	0.500000
airway_epithelial_cell	chr15	90413277	90413306	90413305	+	RAMPAGE_only	7	7	18	0.748425	3.413834	chr15	90413281	90413747	LTR|ERV1|MER84	-	chr15	90388276	90440528	IQGAP1|ENST00000560418.1	+	90388276,90426109,90429588,90431220,90433718,90439331,90440501	90388396,90426266,90429666,90431252,90433795,90439399,90440528	0.666667
airway_epithelial_cell	chr16	68834181	68834321	68834181	+	RAMPAGE_only	4	4	38	1.580008	4.939183	chr16	68833960	68834253	SINE|Alu|AluJb	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.657895
airway_epithelial_cell	chr7	54759973	54759974	54759973	-	High_confidence	14	14	19	0.790004	3.531631	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.894737
airway_epithelial_cell	chr8	8177047	8177061	8177047	+	RAMPAGE_only	12	12	32	1.330533	4.288910	chr8	8172260	8180087	LTR|ERV1|HERVE-int	+	chr8	8065645	8180527	AC105233.5|ENST00000641338.1	+	8065645,8086006,8154394,8177754	8065816,8086223,8154530,8180527	0.968750
airway_epithelial_cell	chr8	12488591	12488645	12488609	-	High_confidence	27	27	170	7.068458	6.394665	chr8	12485575	12493402	LTR|ERV1|HERVE-int	-	chr8	12487009	12488622	MSTRG.30309.1	-	12487009,12488290	12487908,12488622	0.941176
airway_epithelial_cell	chr2	58113247	58113277	58113247	+	High_confidence	7	7	20	0.831583	3.065957	chr2	58113028	58113330	SINE|Alu|AluSg	+	chr2	58112904	58159784	MSTRG.18060.13	+	58112904,58123100,58131807,58135140,58139665,58146315,58159348	58113474,58123233,58131928,58135199,58139832,58146474,58159784	0.750000
airway_epithelial_cell	chr4	75127141	75127154	75127141	-	RAMPAGE_only	2	2	8	0.332633	2.521641	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.875000
airway_epithelial_cell	chr10	72355145	72355169	72355145	-	High_confidence	3	3	10	0.415792	2.921928	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
airway_epithelial_cell	chr5	140700445	140700457	140700445	+	High_confidence	630	1014	2548	105.943717	4.905396	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.990188
airway_epithelial_cell	chrX	19647778	19647785	19647784	-	RAMPAGE_only	14	16	34	1.413692	4.712319	chrX	19647773	19647939	DNA|hAT-Charlie|MER5A	+	chrX	19592067	19664715	SH3KBP1|ENST00000477102.1	-	19592067,19594948,19601499,19607937,19631863,19645399,19664688	19592147,19595000,19601650,19608045,19631958,19645475,19664715	0.882353
airway_epithelial_cell	chr3	11225885	11225919	11225885	-	High_confidence	4	4	25	1.039479	4.163856	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.920000
airway_epithelial_cell	chr9	20658321	20658349	20658348	+	High_confidence	19	27	81	3.367913	5.098836	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658338	20995948	MSTRG.31687.2	+	20658338,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	0.567901
airway_epithelial_cell	chr2	177314885	177314929	177314885	-	RAMPAGE_only	6	6	39	1.621588	4.711953	chr2	177314867	177315028	DNA|hAT-Charlie|MER5A1	+	chr2	177232498	177287777	NFE2L2|ENST00000588123.1	-	177232498,177233249,177234004,177283599,177287610	177232583,177233339,177234271,177283804,177287777	0.512821
airway_epithelial_cell	chr16	2757801	2757815	2757801	+	High_confidence	4	4	9	0.374213	3.000000	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.888889
airway_epithelial_cell	chr20	37297342	37297345	37297344	+	High_confidence	5	9	10	0.415792	2.947703	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.900000
airway_epithelial_cell	chr15	82094003	82094036	82094018	+	RAMPAGE_only	5	5	21	0.873163	3.327340	chr15	82093781	82094459	DNA|TcMar-Tigger|Tigger7	+	chr15	82088632	82095707	LINC01583|ENST00000559788.1	+	82088632,82091726,82095481	82088728,82091935,82095707	0.952381
airway_epithelial_cell	chr14	81170392	81170414	81170413	-	High_confidence	5	6	13	0.540529	2.931209	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.846154
airway_epithelial_cell	chr10	4678086	4678169	4678146	-	High_confidence	10	10	60	2.494750	5.084009	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.716667
airway_epithelial_cell	chr18	7946875	7946946	7946878	+	High_confidence	54	54	270	11.226375	6.130930	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8406856	MSTRG.15141.5	+	7946869,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8143646,8244057,8247844,8253226,8296367,8314780,8319177,8343422,8370889,8376045,8376461,8378264,8379166,8380295,8384560,8387071,8394475,8406108	7946977,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8143779,8244209,8247919,8253414,8296455,8314857,8319214,8343520,8371006,8376200,8376597,8378414,8379340,8380427,8384686,8387235,8394611,8406856	0.962963
airway_epithelial_cell	chr3	194486569	194486589	194486588	-	High_confidence	3	3	8	0.332633	2.521641	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.875000
airway_epithelial_cell	chr22	24011756	24011757	24011756	+	High_confidence	10	10	10	0.415792	2.521928	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.800000
airway_epithelial_cell	chr3	135965673	135965742	135965723	+	High_confidence	21	33	156	6.486350	5.998603	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.910256
airway_epithelial_cell	chr1	28509029	28509071	28509031	+	RAMPAGE_only	3	5	13	0.540529	3.392747	chr1	28508996	28509066	SINE|Alu|AluSz6	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.846154
airway_epithelial_cell	chr15	60391151	60391152	60391151	-	RAMPAGE_only	5	5	8	0.332633	2.521641	chr15	60391133	60391257	SINE|MIR|MIRc	-	chr15	60347336	60387097	ANXA2|ENST00000560014.5	-	60347336,60349074,60351192,60351723,60352378,60354153,60355918,60357145,60360940,60364428,60382341,60386027	60347689,60349197,60351251,60351819,60352476,60354213,60355998,60357236,60361054,60364523,60382441,60387097	0.750000
airway_epithelial_cell	chr2	182030794	182030852	182030851	+	High_confidence	9	10	50	2.078958	4.069774	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.900000
airway_epithelial_cell	chr1	159920334	159920475	159920334	-	RAMPAGE_only	9	9	149	6.195296	5.791087	chr1	159920065	159920288	LINE|CR1|L3b	-	chr1	159918106	159923717	TAGLN2|NM_001277224.1	-	159918106,159919273,159919660,159920329,159923435	159918941,159919376,159919835,159920537,159923717	0.993289
airway_epithelial_cell	chr19	3575603	3575638	3575628	+	High_confidence	5	5	14	0.582108	3.378783	chr19	3575668	3575971	SINE|Alu|AluSx1	+	chr19	3576615	3579083	HMG20B|ENST00000585900.1	+	3576615,3576891,3577980,3578701	3576625,3577107,3578113,3579083	0.642857
airway_epithelial_cell	chr15	80059918	80059933	80059918	+	High_confidence	284	317	804	33.429650	5.787274	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.976368
airway_epithelial_cell	chr2	55618850	55618870	55618850	-	High_confidence	5	6	14	0.582108	3.664498	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.785714
airway_epithelial_cell	chr9	32997349	32997350	32997349	-	High_confidence	21	22	23	0.956321	4.297079	chr9	32997347	32997748	LINE|L2|L2c	-	chr9	32972762	32997360	APTX|ENST00000479656.5	-	32972762,32974457,32984630,32985970,32987543,32988078,32989758,32997242	32973652,32974561,32984857,32986030,32987842,32988124,32989895,32997360	0.869565
airway_epithelial_cell	chr1	112936000	112936022	112936000	-	High_confidence	6	6	20	0.831583	3.681881	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	0.800000
airway_epithelial_cell	chr17	17686056	17686071	17686057	+	RAMPAGE_only	9	13	22	0.914742	3.646439	chr17	17685599	17686175	LINE|L2|L2b	+	chr17	17682494	17793143	RAI1|ENST00000471135.2	+	17682494,17683545,17724027,17792932	17682563,17683703,17724159,17793143	0.545455
airway_epithelial_cell	chr17	56412585	56412602	56412601	+	High_confidence	2	3	8	0.332633	2.807355	chr17	56412352	56412894	LTR|ERVL|MLT2A2	+	chr17	56412699	56449164	MSTRG.14420.9	+	56412699,56440326,56442842,56449078	56412815,56440424,56442933,56449164	0.625000
airway_epithelial_cell	chr20	35307069	35307091	35307069	-	High_confidence	4	4	11	0.457371	2.921928	chr20	35306926	35307046	SINE|MIR|MIR3	-	chr20	35302565	35307082	UQCC1|ENST00000472559.5	-	35302565,35306665	35304069,35307082	0.909091
airway_epithelial_cell	chr8	122671560	122671606	122671560	-	RAMPAGE_only	5	5	17	0.706846	2.733459	chr8	122671397	122672209	LINE|L1|HAL1	+	chr8	122670384	122694106	LINC01151|NR_126348.1	-	122670384,122671268,122693372,122693880	122670500,122671388,122693481,122694106	0.647059
airway_epithelial_cell	chr22	31082207	31082221	31082207	+	High_confidence	2	2	8	0.332633	2.750000	chr22	31082179	31082226	LINE|L2|L2b	-	chr22	31082859	31104623	SMTN|ENST00000619644.4	+	31082859,31083178,31087964,31088512,31088698,31088871,31089698,31090107,31090807,31090960,31091674,31093783,31095302,31095533,31096732,31096997,31097268,31098666,31099061,31099744,31104315	31083002,31083309,31088113,31088606,31088777,31088969,31090019,31090180,31090879,31091482,31091847,31093876,31095455,31095609,31096897,31097060,31097338,31098840,31099179,31099896,31104623	0.500000
airway_epithelial_cell	chr2	181954491	181954526	181954491	+	High_confidence	9	9	47	1.954221	4.089341	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.829787
airway_epithelial_cell	chr12	48489577	48489578	48489577	+	High_confidence	15	16	22	0.914742	3.845351	chr12	48489441	48489716	SINE|Alu|AluSz6	-	chr12	48489292	48496386	MSTRG.7206.5	+	48489292,48490811,48492946,48494797,48496180	48489354,48490836,48492995,48494979,48496386	0.818182
airway_epithelial_cell	chr4	128428040	128428064	128428063	+	High_confidence	3	3	9	0.374213	2.750000	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428069	128519394	AC108062.1|ENST00000511497.5	+	128428069,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519394	0.666667
airway_epithelial_cell	chr17	11944829	11944830	11944829	+	RAMPAGE_only	15	15	21	0.873163	3.308751	chr17	11944747	11944849	DNA|hAT-Charlie|MER5A	+	chr17	11882903	11969748	DNAH9|ENST00000396001.6	+	11882903,11883585,11886824,11891776,11894373,11902718,11905660,11923813,11929865,11932013,11933879,11937351,11942302,11961866,11969299	11883172,11883750,11886965,11891947,11894496,11902912,11905809,11923941,11930093,11932205,11934071,11937522,11942485,11962256,11969748	1.000000
airway_epithelial_cell	chr18	46087060	46087066	46087060	-	RAMPAGE_only	4	4	12	0.498950	3.277613	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084149	46088696	ATP5F1A|ENST00000586523.1	-	46084149	46088696	0.833333
airway_epithelial_cell	chr13	110057302	110057329	110057309	-	High_confidence	2	2	10	0.415792	3.169925	chr13	110056667	110057319	LTR|ERV1|LTR58	+	chr13	110036196	110057286	AL355974.2|ENST00000617298.1	-	110036196,110057125	110036971,110057286	0.900000
airway_epithelial_cell	chr6	79631273	79631303	79631302	+	High_confidence	125	125	433	18.003779	6.240221	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.986143
airway_epithelial_cell	chr17	4187108	4187109	4187108	-	High_confidence	13	13	17	0.706846	2.889549	chr17	4187012	4187196	LINE|L1|L1PB2	-	chr17	4183525	4187109	ANKFY1|ENST00000574736.1	-	4183525,4183811,4184817,4186893	4183551,4183910,4185046,4187109	0.941176
airway_epithelial_cell	chr12	53464815	53464850	53464815	+	RAMPAGE_only	2	2	9	0.374213	2.641604	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479624	MSTRG.7370.39	+	53462513,53465931,53467220,53467804,53468779,53471637,53479405	53462567,53465973,53467293,53467843,53468832,53471807,53479624	0.555556
airway_epithelial_cell	chr3	14017294	14017310	14017309	+	High_confidence	4	4	8	0.332633	3.000000	chr3	14012549	14017955	LINE|L1|L1PB1	-	chr3	14017266	14064401	TPRXL|ENST00000528067.2	+	14017266,14064024	14017665,14064401	0.625000
airway_epithelial_cell	chr9	97697163	97697204	97697163	-	High_confidence	3	3	15	0.623688	3.324863	chr9	97696883	97697140	LINE|L1|L1M4b	-	chr9	97674908	97697293	XPA|ENST00000462523.5	-	97674908,97682199,97684922,97687095,97689533,97693648,97697120	97675587,97682430,97685040,97687261,97689639,97693759,97697293	0.933333
airway_epithelial_cell	chr12	15956713	15956751	15956719	+	High_confidence	20	20	71	2.952121	5.542431	chr12	15956683	15956730	DNA|TcMar-Mariner|MADE1	-	chr12	15956715	16037282	MSTRG.6871.10	+	15956715,15956935,15958187,15959828,15962812,15982307,16032541,16036231,16036689	15956781,15957033,15958335,15959924,15962947,15982436,16032654,16036381,16037282	0.985915
airway_epithelial_cell	chr12	4303830	4303895	4303884	+	RAMPAGE_only	5	5	30	1.247375	4.280395	chr12	4303932	4303980	LINE|RTE-BovB|MamRTE1	+	chr12	4278667	4305350	MSTRG.6634.4	+	4278667,4288841,4299859,4301014	4278919,4288990,4300942,4305350	0.933333
airway_epithelial_cell	chr4	99906521	99906546	99906545	-	High_confidence	5	5	11	0.457371	2.921928	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.909091
airway_epithelial_cell	chr8	39083050	39083066	39083065	+	RAMPAGE_only	7	7	15	0.623688	3.640224	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.600000
airway_epithelial_cell	chr17	4143199	4143218	4143199	+	High_confidence	163	165	382	15.883242	6.037607	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.984293
airway_epithelial_cell	chr7	101308295	101308325	101308324	+	High_confidence	46	59	297	12.349013	6.582449	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.932660
airway_epithelial_cell	chr15	98890315	98890318	98890317	+	High_confidence	6	11	17	0.706846	3.499228	chr15	98890160	98890677	LTR|ERV1|MER41A	+	chr15	98890541	98896886	IGF1R|ENST00000560432.1	+	98890541,98891324,98896756	98890755,98891637,98896886	0.529412
airway_epithelial_cell	chr5	154287434	154287470	154287469	+	High_confidence	11	12	20	0.831583	3.684184	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	0.800000
airway_epithelial_cell	chr17	41521716	41521776	41521762	-	High_confidence	12	12	107	4.448971	5.831141	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41515884	41521774	MSTRG.14047.7	-	41515884,41516103,41516807,41517082,41518329,41521684	41516010,41516265,41516964,41517165,41518461,41521774	0.887850
airway_epithelial_cell	chr4	74114610	74114626	74114617	+	High_confidence	4	4	14	0.582108	3.521641	chr4	74114563	74114677	SINE|MIR|MIR	+	chr4	74114497	74162253	MSTRG.24264.2	+	74114497,74125439,74143392,74160054	74114657,74125517,74143467,74162253	0.642857
airway_epithelial_cell	chr6	7347474	7347503	7347502	-	High_confidence	7	7	22	0.914742	4.021928	chr6	7347074	7349650	LINE|L1|L1PB1	+	chr6	7301332	7347446	SSR1|ENST00000488834.5	-	7301332,7303549,7309916,7334021,7347371	7301572,7303637,7310029,7334090,7347446	0.636364
airway_epithelial_cell	chr1	153967482	153967512	153967486	+	High_confidence	11	12	32	1.330533	4.281728	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.593750
airway_epithelial_cell	chr4	74114559	74114577	74114559	+	High_confidence	165	166	335	13.929021	7.154245	chr4	74114563	74114677	SINE|MIR|MIR	+	chr4	74114497	74162253	MSTRG.24264.2	+	74114497,74125439,74143392,74160054	74114657,74125517,74143467,74162253	0.555224
airway_epithelial_cell	chr6	43025290	43025308	43025307	+	RAMPAGE_only	6	6	12	0.498950	2.625815	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43021646	43029599	RRP36|NM_033112.2	+	43021646,43024984,43025262,43026036,43027177,43027359,43029091	43021784,43025132,43025329,43026141,43027252,43027477,43029599	1.000000
airway_epithelial_cell	chr7	75169168	75169180	75169168	-	RAMPAGE_only	5	5	11	0.457371	2.521928	chr7	75168965	75169216	SINE|Alu|AluJo	+	chr7	75156577	75171998	NCF1C|NR_003187.3	-	75156577,75157249,75157865,75160658,75162325,75162896,75165123,75166536,75166801,75168631,75171871	75156915,75157395,75157970,75160776,75162433,75163019,75165179,75166702,75166877,75168710,75171998	0.909091
airway_epithelial_cell	chr20	8600707	8600739	8600725	+	High_confidence	11	13	49	2.037379	4.284231	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600725	8788523	PLCB1|ENST00000626966.2	+	8600725,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8600781,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788523	0.959184
airway_epithelial_cell	chr7	2242922	2242923	2242922	+	High_confidence	78	78	78	3.243175	5.338627	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
airway_epithelial_cell	chr9	20732392	20732441	20732428	+	RAMPAGE_only	18	23	72	2.993700	5.043044	chr9	20732128	20733009	LINE|L2|L2b	-	chr9	20726350	20770133	FOCAD|ENST00000604103.1	+	20726350,20740235,20758089,20764873,20770031	20726432,20740340,20758191,20765073,20770133	0.944444
airway_epithelial_cell	chr15	67166512	67166533	67166530	+	High_confidence	79	79	155	6.444771	5.093573	chr15	67166449	67166543	LINE|L2|L2b	-	chr15	67166530	67181420	SMAD3|ENST00000558428.5	+	67166530,67170553,67181240	67166853,67170604,67181420	0.870968
airway_epithelial_cell	chr5	117454948	117454953	117454949	+	High_confidence	49	77	127	5.280554	5.782610	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.763780
airway_epithelial_cell	chr13	29647624	29647636	29647624	+	High_confidence	6	6	10	0.415792	3.169925	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.600000
airway_epithelial_cell	chr19	46927466	46927467	46927466	+	RAMPAGE_only	91	95	116	4.823183	5.678584	chr19	46927388	46927549	LINE|L2|L2b	-	chr19	46918675	47005077	ARHGAP35|ENST00000404338.7	+	46918675,46937263,46987988,46989543,46999303,47000330	46922356,46937408,46988066,46989675,46999409,47005077	0.896552
airway_epithelial_cell	chr7	87039797	87039870	87039869	-	High_confidence	9	10	36	1.496850	4.734522	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86880015	87039811	MSTRG.29312.3	-	86880015,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,86947726,86964903,87039755	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,86947922,86965024,87039811	0.861111
airway_epithelial_cell	chr22	50757126	50757134	50757133	+	High_confidence	4	4	15	0.623688	3.378783	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.800000
airway_epithelial_cell	chr5	151268717	151268927	151268811	+	RAMPAGE_only	36	37	461	19.167996	3.932974	chr5	151268575	151268846	DNA|hAT-Charlie|MER102a	-	chr5	151253191	151272765	MSTRG.26464.4	+	151253191,151259754,151266730,151267295,151268200	151253297,151259916,151266913,151268141,151272765	0.997831
airway_epithelial_cell	chr5	128082264	128082276	128082264	-	High_confidence	7	7	14	0.582108	3.392747	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	128024026	128082960	LINC01184|ENST00000508878.5	-	128024026,128061143,128076946,128081972,128082734	128024298,128061244,128077093,128082194,128082960	0.571429
airway_epithelial_cell	chr16	58755976	58755977	58755976	-	RAMPAGE_only	34	34	34	1.413692	4.053308	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
airway_epithelial_cell	chr10	1036449	1036452	1036449	+	High_confidence	4	4	9	0.374213	2.947703	chr10	1036495	1036911	LTR|ERVL|MER70C	+	chr10	1036822	1044024	IDI2-AS1|ENST00000536039.2	+	1036822,1043528,1043588,1043685,1043725,1043760	1036893,1043586,1043681,1043721,1043758,1044024	0.777778
airway_epithelial_cell	chr4	118835953	118835954	118835953	-	High_confidence	11	11	12	0.498950	3.459432	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.916667
airway_epithelial_cell	chrX	44951147	44951148	44951147	+	High_confidence	337	370	383	15.924821	6.494238	chrX	44950752	44951268	LTR|ERV1|LTR10D	+	chrX	44951147	45112598	MSTRG.33250.9	+	44951147,44961283,44974665,45010960,45020609,45034930,45037654,45051708,45053828,45059005,45059246,45060021,45061323,45063421,45069578,45076696,45078399,45079145,45082575,45082714,45083459,45085864,45089742,45090722,45107409,45110078,45111381	44951195,44961392,44974715,45011019,45020730,45034985,45037689,45051802,45053955,45059104,45059466,45060156,45061419,45063817,45070357,45076826,45078505,45079351,45082640,45082789,45083608,45085979,45089930,45090864,45107536,45110249,45112598	0.616188
airway_epithelial_cell	chr12	109878996	109878999	109878998	+	RAMPAGE_only	11	15	18	0.748425	3.836592	chr12	109878962	109879076	SINE|MIR|MIRb	-	chr12	109900273	109918069	TCHP|NM_001143852.1	+	109900273,109903026,109903936,109904736,109906571,109907525,109908585,109908870,109911062,109912990,109914441,109915402,109916590	109900426,109903214,109904147,109904793,109906640,109907699,109908698,109908937,109911235,109913072,109914627,109915546,109918069	1.000000
airway_epithelial_cell	chr17	65855375	65855415	65855375	-	RAMPAGE_only	4	4	14	0.582108	3.392747	chr17	65854979	65855781	LINE|L1|L1MEh	+	chr17	65635815	65873661	CEP112|ENST00000580694.5	-	65635815,65637123,65640963,65689128,65743067,65750661,65851803,65872956,65873636	65635974,65637188,65641065,65689218,65743217,65750724,65852034,65873121,65873661	0.571429
airway_epithelial_cell	chr10	84171750	84171901	84171813	-	High_confidence	15	16	107	4.448971	4.269479	chr10	84171609	84171986	LTR|ERV1|Harlequin-int	-	chr10	84167227	84172076	HOST2|NR_134505.1	-	84167227,84171721	84168729,84172076	0.831776
airway_epithelial_cell	chr11	130199044	130199062	130199044	+	RAMPAGE_only	12	12	20	0.831583	2.623220	chr11	130199074	130199268	DNA|hAT-Tip100|MER91A	+	chr11	130159786	130210362	ST14|NM_021978.3	+	130159786,130188113,130188529,130188868,130189738,130190112,130190453,130194148,130194639,130196338,130196569,130197840,130198307,130198507,130198946,130199950,130208409,130209441,130209661	130160060,130188273,130188657,130188939,130189896,130190148,130190694,130194288,130194737,130196448,130196700,130197945,130198418,130198621,130199069,130200137,130208684,130209578,130210362	1.000000
airway_epithelial_cell	chr3	14017455	14017488	14017486	+	High_confidence	18	24	60	2.494750	5.627642	chr3	14012549	14017955	LINE|L1|L1PB1	-	chr3	14017552	14065984	TPRXL|ENST00000429201.6	+	14017552,14057137,14063378,14064019	14017665,14057184,14063508,14065984	0.566667
airway_epithelial_cell	chr2	229586868	229586927	229586868	-	High_confidence	7	7	31	1.288954	4.389898	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229407239	229586896	MSTRG.19689.2	-	229407239,229418107,229447315,229477139,229512782,229546946,229585857,229586693	229407345,229418230,229447540,229477253,229512936,229547092,229586024,229586896	0.741935
airway_epithelial_cell	chr12	48489292	48489316	48489315	+	High_confidence	28	31	122	5.072658	5.896973	chr12	48489156	48489319	DNA|hAT-Tip100|MamTip3	+	chr12	48489292	48496386	MSTRG.7206.5	+	48489292,48490811,48492946,48494797,48496180	48489354,48490836,48492995,48494979,48496386	0.852459
airway_epithelial_cell	chr1	112762636	112762681	112762654	+	High_confidence	8	12	67	2.785804	5.424006	chr1	112762625	112762805	SINE|MIR|MIRb	+	chr1	112762643	112797846	MSTRG.1785.1	+	112762643,112797591	112762746,112797846	0.671642
airway_epithelial_cell	chr16	15651951	15651952	15651951	+	RAMPAGE_only	7	7	9	0.374213	2.947703	chr16	15651926	15652196	SINE|Alu|AluSx4	-	chr16	15650256	15700491	MSTRG.11991.7	+	15650256,15664735,15667285,15677800,15687374,15691143,15694164,15696708,15699596	15650294,15664861,15667439,15677949,15687511,15691323,15694256,15696860,15700491	0.888889
airway_epithelial_cell	chr1	6200543	6200605	6200604	-	High_confidence	4	4	18	0.748425	2.866587	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.944444
airway_epithelial_cell	chr12	3104111	3104133	3104111	+	RAMPAGE_only	3	3	12	0.498950	3.418296	chr12	3103785	3104309	LINE|L2|L2a	-	chr12	3077384	3281756	TSPAN9|ENST00000649909.1	+	3077384,3083652,3278420,3278991,3280381,3281197,3281733	3077453,3083719,3278612,3279066,3280483,3281329,3281756	0.500000
airway_epithelial_cell	chr2	232890986	232891000	232890986	-	High_confidence	2	2	11	0.457371	2.921928	chr2	232890857	232891264	LINE|L2|L2c	+	chr2	232879214	232890980	MSTRG.19753.2	-	232879214,232881145,232882185,232883310,232883980,232885279,232888032,232890933	232879679,232881250,232882265,232883466,232884144,232885369,232888107,232890980	0.909091
airway_epithelial_cell	chrX	53220846	53220851	53220846	-	RAMPAGE_only	2	3	7	0.291054	2.584963	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	0.857143
airway_epithelial_cell	chr17	59619868	59619923	59619894	+	High_confidence	729	844	2724	113.261650	6.283725	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.903084
airway_epithelial_cell	chr14	55796687	55796688	55796687	-	High_confidence	307	330	379	15.758504	5.578773	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796688	LINC00520|ENST00000649892.1	-	55781136,55793367,55796602	55782581,55793456,55796688	0.920844
airway_epithelial_cell	chr2	71024039	71024075	71024039	+	High_confidence	8	8	42	1.746325	4.481254	chr2	71020399	71024471	LTR|ERV1|HERVE-int	+	chr2	71024074	71029931	OR7E91P|NR_002185.3	+	71024074,71024305,71028915	71024200,71024394,71029931	0.904762
airway_epithelial_cell	chr19	48868595	48868631	48868613	-	High_confidence	121	127	644	26.776983	7.206210	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.996894
airway_epithelial_cell	chr19	46925766	46925791	46925790	+	RAMPAGE_only	2	3	7	0.291054	2.807355	chr19	46925682	46925823	SINE|MIR|MIR	+	chr19	46918675	47005077	ARHGAP35|ENST00000404338.7	+	46918675,46937263,46987988,46989543,46999303,47000330	46922356,46937408,46988066,46989675,46999409,47005077	1.000000
airway_epithelial_cell	chr2	110642789	110642790	110642789	-	High_confidence	14	14	14	0.582108	3.521641	chr2	110642693	110642986	SINE|Alu|AluJr	-	chr2	110641325	110642790	BUB1|ENST00000478175.1	-	110641325,110641641,110642118,110642448	110641464,110641803,110642234,110642790	0.928571
airway_epithelial_cell	chr2	131492702	131492720	131492719	-	High_confidence	2	3	7	0.291054	2.584963	chr2	131492672	131492724	LINE|L2|L2b	+	chr2	131483957	131492743	MZT2A|ENST00000410036.2	-	131483957,131491875,131492719	131484218,131491972,131492743	0.571429
airway_epithelial_cell	chr10	84172135	84172169	84172135	-	High_confidence	5	5	14	0.582108	3.700440	chr10	84171986	84172465	LTR|ERV1|LTR2B	-	chr10	84167227	84172093	CERNA2|ENST00000647830.1	-	84167227,84171721	84168729,84172093	0.785714
airway_epithelial_cell	chr21	28674855	28674856	28674855	-	High_confidence	8	11	12	0.498950	3.027169	chr21	28674675	28675025	LTR|ERVL-MaLR|MLT1A0	-	chr21	28439345	28674848	AF165147.1|ENST00000433310.6	-	28439345,28446289,28577218,28626584,28674646	28444809,28446472,28577380,28626676,28674848	0.666667
airway_epithelial_cell	chr17	60887025	60887084	60887070	+	High_confidence	4	6	24	0.997900	4.175736	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.666667
airway_epithelial_cell	chr2	171433124	171433148	171433124	-	High_confidence	5	8	37	1.538429	4.574054	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171330624	171434018	METTL8|ENST00000392599.6	-	171330624,171339183,171360421,171392042,171433882	171330698,171339554,171360513,171392197,171434018	0.756757
airway_epithelial_cell	chr19	571725	571774	571770	-	High_confidence	11	11	68	2.827383	5.226737	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.794118
airway_epithelial_cell	chr17	51153837	51153869	51153858	+	High_confidence	13	13	53	2.203696	5.226251	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51154043	51155759	NME1|ENST00000456492.1	+	51154043,51155650	51154444,51155759	0.566038
airway_epithelial_cell	chr2	218287233	218287280	218287279	-	High_confidence	9	9	42	1.746325	4.707677	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.642857
airway_epithelial_cell	chr2	58113032	58113034	58113033	+	High_confidence	20	24	35	1.455271	4.707715	chr2	58113028	58113330	SINE|Alu|AluSg	+	chr2	58112904	58159784	MSTRG.18060.13	+	58112904,58123100,58131807,58135140,58139665,58146315,58159348	58113474,58123233,58131928,58135199,58139832,58146474,58159784	0.971429
airway_epithelial_cell	chr8	29735222	29735264	29735222	-	High_confidence	60	64	241	10.020579	6.705763	chr8	29735013	29735262	SINE|MIR|MIR	-	chr8	29673921	29735223	LINC00589|ENST00000518623.5	-	29673921,29677909,29726155,29735170	29674443,29678004,29726423,29735223	0.539419
airway_epithelial_cell	chr17	32684271	32684272	32684271	-	RAMPAGE_only	11	11	13	0.540529	3.546594	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32494718	32659406	MYO1D|ENST00000577352.5	-	32494718,32605086,32638721,32653842,32654476,32659114	32494915,32605241,32638835,32653947,32654621,32659406	0.846154
airway_epithelial_cell	chr14	67478175	67478186	67478185	-	RAMPAGE_only	6	6	15	0.623688	3.521641	chr14	67478033	67478148	LTR|ERVL-MaLR|MLT1F2	-	chr14	67470265	67515304	TMEM229B|NM_182526.2	-	67470265,67486999,67515085	67473941,67487172,67515304	0.733333
airway_epithelial_cell	chr1	42959041	42959100	42959077	+	High_confidence	34	37	141	5.862663	4.603701	chr1	42959103	42959181	SINE|MIR|MIR3	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.957447
airway_epithelial_cell	chr13	45206633	45206645	45206633	+	High_confidence	6	7	13	0.540529	2.931209	chr13	45206646	45206717	SINE|MIR|MIRb	+	chr13	45206354	45267333	GTF2F2|ENST00000494087.5	+	45206354,45252870,45267232	45207505,45252970,45267333	1.000000
airway_epithelial_cell	chr7	7566514	7566534	7566530	-	High_confidence	5	5	21	0.873163	3.681881	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.809524
airway_epithelial_cell	chr17	41525689	41525690	41525689	-	RAMPAGE_only	7	8	11	0.457371	2.913977	chr17	41525654	41525806	SINE|MIR|MIRb	-	chr17	41523616	41528308	KRT19|ENST00000361566.7	-	41523616,41524142,41524378,41524842,41525190,41527827	41523997,41524268,41524540,41524999,41525273,41528308	0.636364
airway_epithelial_cell	chr16	72627704	72627735	72627704	-	RAMPAGE_only	3	4	10	0.415792	2.646439	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72427357	72664933	MSTRG.12802.3	-	72427357,72522552,72523331,72540577,72555264,72664891	72427457,72522623,72523415,72540611,72555326,72664933	0.600000
airway_epithelial_cell	chr2	55279518	55279543	55279538	+	RAMPAGE_only	16	16	45	1.871063	5.030633	chr2	55279270	55280234	LTR|ERVK|LTR5_Hs	+	chr2	55314160	55340227	AC012358.3|ENST00000630025.2	+	55314160,55329421,55332138,55339502	55314251,55329713,55332261,55340227	0.600000
airway_epithelial_cell	chr6	30876420	30876440	30876420	+	High_confidence	3	3	8	0.332633	2.521641	chr6	30876394	30876521	DNA|hAT-Charlie|Charlie29a	-	chr6	30876443	30889411	DDR1|ENST00000505066.5	+	30876443,30888687,30888907,30889201	30876559,30888814,30889010,30889411	0.625000
airway_epithelial_cell	chr10	52455292	52455324	52455292	-	High_confidence	668	702	1383	57.503988	7.228585	chr10	52454703	52455679	LINE|L2|L2a	+	chr10	52450873	52455272	LNCAROD|ENST00000435813.6	-	52450873,52454585,52455105	52451517,52454749,52455272	0.723066
airway_epithelial_cell	chr20	37344680	37344696	37344680	+	High_confidence	5	5	22	0.914742	3.522572	chr20	37344715	37344779	SINE|MIR|MIRc	+	chr20	37344684	37405432	SRC|NM_005417.4	+	37344684,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.818182
airway_epithelial_cell	chr21	33945809	33945810	33945809	-	RAMPAGE_only	44	44	44	1.829483	3.724461	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
airway_epithelial_cell	chr12	10363779	10363873	10363872	+	High_confidence	8	9	25	1.039479	3.973661	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.880000
airway_epithelial_cell	chr17	82081606	82081839	82081606	-	High_confidence	27	29	176	7.317933	5.915822	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.596591
airway_epithelial_cell	chr2	73072182	73072194	73072193	-	High_confidence	17	17	33	1.372113	4.373551	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.636364
airway_epithelial_cell	chr5	32403130	32403167	32403145	-	RAMPAGE_only	3	5	18	0.748425	3.616875	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.944444
airway_epithelial_cell	chr6	43013471	43013496	43013495	-	High_confidence	4	4	10	0.415792	2.921928	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
airway_epithelial_cell	chr2	113117947	113117972	113117970	+	High_confidence	2812	3387	6623	275.378822	6.472707	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117980	113133121	MSTRG.18678.7	+	113117980,113120065,113121447,113127688,113129575,113131044,113132655	113118028,113120128,113121618,113127740,113129664,113131157,113133121	0.754039
airway_epithelial_cell	chrX	152972193	152972276	152972193	+	RAMPAGE_only	17	20	46	1.912642	2.593008	chrX	152972090	152972223	SINE|MIR|MIRb	-	chrX	152941700	152973472	ZNF185|ENST00000454925.1	+	152941700,152945266,152959698,152963838,152965446,152967166,152969381,152970442,152971273	152941830,152945464,152959896,152963949,152965527,152967238,152969484,152970541,152973472	0.934783
airway_epithelial_cell	chr16	761092	761111	761110	+	High_confidence	4	4	10	0.415792	2.947703	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.900000
airway_epithelial_cell	chrX	119441089	119441109	119441089	+	RAMPAGE_only	2	2	7	0.291054	2.521641	chrX	119435468	119441493	LINE|L1|L1HS	-	chrX	119399408	119453182	SLC25A43|ENST00000493093.5	+	119399408,119410189,119452008,119452864	119399678,119410362,119452143,119453182	0.714286
airway_epithelial_cell	chr2	73736756	73736757	73736756	-	High_confidence	11	11	11	0.457371	2.550341	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73729889	73737335	MSTRG.18282.6	-	73729889,73730559,73732162,73734428,73737301	73730029,73730736,73732681,73734588,73737335	0.909091
airway_epithelial_cell	chr3	50226714	50226726	50226714	+	High_confidence	7	7	16	0.665267	3.452820	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	1.000000
airway_epithelial_cell	chr20	62367047	62367072	62367071	-	High_confidence	3	5	12	0.498950	3.095795	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.916667
airway_epithelial_cell	chr18	36122241	36122245	36122242	-	High_confidence	3	4	8	0.332633	2.521641	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.875000
airway_epithelial_cell	chr2	233691673	233691710	233691709	+	High_confidence	100	105	317	13.180596	7.050977	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233691709	233772341	UGT1A6|ENST00000446481.6	+	233691709,233693798,233767033,233767848,233768219,233769530,233772261	233691820,233693865,233767165,233767936,233768439,233769664,233772341	0.507886
airway_epithelial_cell	chr14	77737015	77737051	77737015	-	High_confidence	2	2	12	0.498950	2.913977	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.833333
airway_epithelial_cell	chr20	58461888	58461897	58461888	-	RAMPAGE_only	4	4	9	0.374213	2.725481	chr20	58461664	58462098	LINE|L2|L2b	+	chr20	58459100	58514938	APCDD1L|NM_001304787.1	-	58459100,58467105,58470608,58513816,58514658	58461554,58467658,58470747,58513987,58514938	0.777778
airway_epithelial_cell	chr21	38235459	38235514	38235513	+	High_confidence	19	19	44	1.829483	4.570354	chr21	38235271	38235576	SINE|Alu|AluSx	+	chr21	38235468	38301490	MSTRG.20859.16	+	38235468,38257045,38291605,38296925,38299243	38235670,38257185,38291747,38297023,38301490	1.000000
airway_epithelial_cell	chr5	134613031	134613061	134613050	-	RAMPAGE_only	5	6	20	0.831583	2.945039	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606429	134614903	SAR1B|ENST00000508363.5	-	134606429,134608371,134609570,134612690	134607066,134608503,134609674,134614903	0.950000
airway_epithelial_cell	chr17	28233986	28234046	28234009	-	RAMPAGE_only	6	8	44	1.829483	4.452444	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.977273
airway_epithelial_cell	chr5	176411456	176411459	176411458	-	High_confidence	132	160	221	9.188996	5.661020	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392792	176410798	MSTRG.26657.5	-	176392792,176397606,176397929,176410256,176410627	176392945,176397718,176398047,176410303,176410798	0.927602
airway_epithelial_cell	chr11	64226142	64226180	64226158	-	High_confidence	86	93	637	26.485929	7.103839	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.952904
airway_epithelial_cell	chr8	17692225	17692259	17692258	-	High_confidence	21	21	75	3.118438	5.773444	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.786667
airway_epithelial_cell	chr22	42721262	42721276	42721262	-	High_confidence	4	4	25	1.039479	3.123216	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	1.000000
airway_epithelial_cell	chr3	37058846	37058884	37058883	-	RAMPAGE_only	3	3	10	0.415792	2.947703	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.800000
airway_epithelial_cell	chr2	191167917	191167922	191167917	-	RAMPAGE_only	4	4	10	0.415792	2.646439	chr2	191167857	191168044	LINE|CR1|L3	+	chr2	191029575	191151596	STAT4|NM_001243835.1	-	191029575,191030971,191031449,191032957,191033489,191033910,191034547,191036163,191039198,191041064,191054489,191058017,191058201,191058709,191061728,191062761,191064806,191066429,191069692,191073097,191076226,191146612,191148075,191151333	191029866,191031080,191031516,191033149,191033626,191034005,191034597,191036299,191039297,191041148,191054534,191058111,191058219,191058769,191061821,191062920,191064958,191066515,191069771,191073190,191076325,191146757,191148204,191151596	1.000000
airway_epithelial_cell	chr2	241372938	241372950	241372949	+	RAMPAGE_only	8	8	21	0.873163	3.826875	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241356296	241466030	FARP2|ENST00000373287.8	+	241356296,241373083,241403827,241404798,241407536,241411032,241413306,241417961,241431678,241434157,241434961,241436480,241441303,241456746,241462522,241463334,241463898,241465459	241356388,241373290,241403932,241404841,241407615,241411130,241413421,241418109,241431774,241434321,241435030,241436538,241441556,241456922,241462612,241463468,241463980,241466030	0.761905
airway_epithelial_cell	chr1	158146825	158146849	158146838	-	High_confidence	5	7	18	0.748425	3.530493	chr1	158146568	158147206	LTR|ERVL|MER70B	-	chr1	158132039	158146929	LINC01704|ENST00000635685.1	-	158132039,158146766	158132656,158146929	0.888889
airway_epithelial_cell	chr4	2936335	2936336	2936335	+	High_confidence	22	25	25	1.039479	4.023465	chr4	2935837	2936474	LTR|ERV1|LTR8	+	chr4	2935545	2951078	NOP14-AS1|NR_015453.2	+	2935545,2938692,2946872,2950152	2938142,2938792,2947120,2951078	1.000000
airway_epithelial_cell	chr1	154975505	154975546	154975524	+	High_confidence	13	13	52	2.162117	4.871220	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.923077
airway_epithelial_cell	chr7	101217578	101217595	101217594	-	High_confidence	8	8	22	0.914742	3.880180	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.954545
airway_epithelial_cell	chr5	160199150	160199156	160199155	+	High_confidence	15	18	28	1.164217	3.708048	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.964286
airway_epithelial_cell	chr7	134527838	134527853	134527838	+	High_confidence	4	4	8	0.332633	2.750000	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527619	134537087	AKR1B10|ENST00000475559.1	+	134527619,134530642,134531907,134533003,134535616,134536708,134537050	134527977,134530810,134532024,134533081,134535663,134536772,134537087	0.625000
airway_epithelial_cell	chrX	107156153	107156212	107156211	-	RAMPAGE_only	3	3	16	0.665267	3.906891	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.750000
airway_epithelial_cell	chr11	17282821	17282831	17282821	+	RAMPAGE_only	2	3	7	0.291054	2.521641	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.714286
airway_epithelial_cell	chr13	110179272	110179302	110179272	-	RAMPAGE_only	2	3	9	0.374213	3.000000	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	0.888889
airway_epithelial_cell	chr19	1148418	1148424	1148423	-	RAMPAGE_only	4	4	11	0.457371	2.913977	chr19	1148343	1148479	LINE|L2|L2b	+	chr19	1107633	1132274	SBNO2|NM_001100122.1	-	1107633,1108778,1109134,1109291,1109505,1109682,1110744,1111018,1111505,1111995,1112188,1112401,1112817,1113534,1114230,1116020,1116828,1117322,1119010,1119515,1119905,1122138,1122467,1122657,1122893,1123533,1123941,1127603,1132089	1108704,1108969,1109211,1109423,1109598,1109777,1110888,1111093,1111614,1112067,1112301,1112537,1112949,1113704,1114422,1116103,1116926,1117499,1119164,1119621,1120023,1122282,1122558,1122791,1123045,1123639,1124022,1127765,1132274	1.000000
airway_epithelial_cell	chr7	141737468	141737480	141737468	+	High_confidence	3	3	8	0.332633	2.750000	chr7	141736645	141737590	DNA|TcMar-Tigger|Tigger3b	+	chr7	141738320	141750461	SSBP1|ENST00000265304.10	+	141738320,141739123,141742168,141743560,141743901,141745495,141750310	141738410,141739190,141742229,141743701,141743989,141745584,141750461	1.000000
airway_epithelial_cell	chr8	81590141	81590178	81590141	-	RAMPAGE_only	3	3	16	0.665267	3.750000	chr8	81589985	81590374	DNA|hAT-Charlie|Charlie14a	+	chr8	81524980	81531378	FABP12|ENST00000360464.4	-	81524980,81527019,81529437,81531242	81525120,81527121,81529610,81531378	0.875000
airway_epithelial_cell	chr12	121950281	121950292	121950291	+	High_confidence	597	599	1052	43.741283	6.972446	chr12	121949929	121950482	LINE|L1|L1MB5	+	chr12	121950236	121972033	MSTRG.8212.20	+	121950236,121951479,121954119,121957073,121958271,121958942,121960584,121961977,121966954,121968005,121969681	121950336,121951530,121954334,121957268,121958522,121959094,121960758,121962162,121967069,121968169,121972033	0.975285
airway_epithelial_cell	chr2	182928788	182928846	182928788	-	RAMPAGE_only	4	4	23	0.956321	4.277613	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182909114	183038472	NCKAP1|ENST00000361354.8	-	182909114,182926815,182928116,182928782,182930694,182934751,182935292,182942069,182952404,182952792,182953112,182956461,182957456,182962158,182964675,182967215,182976892,182978833,182981243,182982820,182983285,182986170,182989029,182994838,182995700,183001952,183002126,183002973,183003232,183023805,183037991	182925818,182926905,182928226,182928899,182930788,182934832,182935375,182942163,182952502,182952923,182953331,182956593,182957596,182962278,182964808,182967361,182976951,182978915,182981376,182982927,182983382,182986227,182989186,182994887,182995838,183002043,183002269,183003030,183003325,183023916,183038472	0.913043
airway_epithelial_cell	chr2	3536496	3536516	3536514	-	High_confidence	2	4	10	0.415792	2.947703	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.500000
airway_epithelial_cell	chr6	13794241	13794242	13794241	-	RAMPAGE_only	6	6	8	0.332633	2.750000	chr6	13794117	13794268	SINE|Alu|FLAM_C	-	chr6	13787133	13801345	MCUR1|ENST00000607303.1	-	13787133,13788645,13791877,13793893,13798832,13800340,13801287	13787355,13788704,13791992,13793947,13798904,13800382,13801345	1.000000
airway_epithelial_cell	chr1	19344364	19344365	19344364	-	RAMPAGE_only	7	7	9	0.374213	2.500000	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.888889
airway_epithelial_cell	chr19	55069766	55069781	55069780	-	High_confidence	6	6	18	0.748425	3.281036	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55044323	55069546	RDH13|NM_138412.3	-	55044323,55047386,55048328,55048658,55056652,55059156,55064295,55069321	55045309,55047488,55048541,55048763,55056808,55059275,55064412,55069546	0.722222
airway_epithelial_cell	chr4	102431241	102431260	102431244	-	High_confidence	14	14	66	2.744225	4.935765	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.909091
airway_epithelial_cell	chr20	3795759	3795823	3795788	+	High_confidence	17	17	83	3.451071	5.121868	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	1.000000
airway_epithelial_cell	chr11	7906253	7906254	7906253	-	High_confidence	7	7	7	0.291054	2.807355	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.571429
airway_epithelial_cell	chr11	123060115	123060256	123060252	-	High_confidence	17	25	218	9.064258	5.280756	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.637615
airway_epithelial_cell	chr11	64242615	64242620	64242619	+	High_confidence	9	9	21	0.873163	3.826875	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.904762
airway_epithelial_cell	chr19	15829094	15829095	15829094	+	High_confidence	8	11	11	0.457371	3.277613	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15835695	UCA1|ENST00000645177.1	+	15829094,15831254,15834501,15835553	15829338,15831356,15835280,15835695	0.909091
airway_epithelial_cell	chr19	12800915	12801045	12800915	-	High_confidence	9	9	98	4.074758	4.753645	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.959184
airway_epithelial_cell	chr13	74442945	74442997	74442980	+	RAMPAGE_only	17	18	76	3.160017	5.250895	chr13	74442973	74443195	DNA|hAT-Charlie|MER30	+	chr13	74419157	74444735	LINC00381|ENST00000649990.1	+	74419157,74426092,74434502,74443159,74444097	74419228,74426418,74434622,74443284,74444735	1.000000
airway_epithelial_cell	chr19	3062919	3062965	3062922	-	High_confidence	11	13	40	1.663167	4.558107	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.975000
airway_epithelial_cell	chr9	125650437	125650446	125650437	-	High_confidence	3	3	11	0.457371	2.913977	chr9	125649959	125650542	LINE|L2|L2b	+	chr9	125444500	125650417	MAPKAP1|ENST00000420643.5	-	125444500,125467971,125484442,125543058,125559632,125585554,125599834,125650363	125444598,125468109,125484583,125543168,125559809,125585727,125599927,125650417	0.909091
airway_epithelial_cell	chr10	6779588	6779631	6779630	+	High_confidence	10	10	41	1.704746	4.733870	chr10	6779419	6779969	LTR|ERVL|MLT2A2	+	chr10	6779597	6842906	LINC00707|NR_038291.1	+	6779597,6781303,6833642,6837973,6840390	6779887,6781486,6833688,6838008,6842906	0.634146
airway_epithelial_cell	chr19	11323424	11323436	11323435	-	RAMPAGE_only	3	5	11	0.457371	2.921928	chr19	11323311	11323610	SINE|Alu|AluSx1	+	chr19	11322045	11339668	RAB3D|NM_004283.3	-	11322045,11335446,11335664,11337171,11339468	11325585,11335571,11335783,11337460,11339668	0.909091
airway_epithelial_cell	chr1	97904675	97904679	97904675	-	RAMPAGE_only	7	7	13	0.540529	3.546594	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.846154
airway_epithelial_cell	chr2	24085656	24085657	24085656	-	High_confidence	7	7	7	0.291054	2.521641	chr2	24085501	24085858	LTR|ERV1|MER31A	+	chr2	24077432	24085215	TP53I3|NM_004881.4	-	24077432,24079443,24080818,24082884,24084188	24077761,24079640,24081031,24083152,24085215	0.714286
airway_epithelial_cell	chr2	9114921	9114923	9114922	+	High_confidence	10	14	18	0.748425	3.836592	chr2	9114748	9115100	LTR|ERVL-MaLR|THE1B	+	chr2	9115196	9116884	AC093904.3|ENST00000492300.1	+	9115196,9116572	9115252,9116884	0.722222
airway_epithelial_cell	chr14	30690418	30690453	30690449	+	RAMPAGE_only	13	13	42	1.746325	4.327340	chr14	30684809	30690837	LINE|L1|L1HS	-	chr14	30676125	30705885	SCFD1|ENST00000554486.1	+	30676125,30694772,30700187,30702295,30705822	30676633,30694869,30700258,30702375,30705885	0.666667
airway_epithelial_cell	chr19	1267381	1267395	1267381	+	High_confidence	2	2	8	0.332633	3.000000	chr19	1267425	1267483	LINE|L2|L2c	+	chr19	1267411	1274810	CIRBP|ENST00000585913.5	+	1267411,1270927,1271139,1271328,1271550,1271980,1274306,1274651	1267443,1271036,1271246,1271467,1271632,1272051,1274440,1274810	0.625000
airway_epithelial_cell	chr17	28719711	28719712	28719711	+	High_confidence	11	11	11	0.457371	2.663533	chr17	28719632	28719760	SINE|Alu|AluYh3	+	chr17	28719981	28724356	RPL23A|NM_000984.5	+	28719981,28720706,28722722,28723570,28723866	28720030,28720890,28722899,28723640,28724356	1.000000
airway_epithelial_cell	chr3	33838239	33838261	33838239	+	RAMPAGE_only	4	4	9	0.374213	3.169925	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.777778
airway_epithelial_cell	chr3	134485408	134485463	134485443	-	High_confidence	6	6	40	1.663167	4.853056	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	1.000000
airway_epithelial_cell	chr12	110440319	110440371	110440319	-	RAMPAGE_only	6	7	48	1.995800	4.854977	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.958333
airway_epithelial_cell	chr12	12927723	12927744	12927733	+	High_confidence	171	174	382	15.883242	6.937999	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.835079
airway_epithelial_cell	chr1	183590751	183590785	183590784	-	High_confidence	7	8	21	0.873163	3.403989	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555562	183590876	NCF2|ENST00000367536.5	-	183555562,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590876	1.000000
airway_epithelial_cell	chr17	2975627	2975666	2975660	+	RAMPAGE_only	5	9	35	1.455271	4.879143	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2991344	3008090	RAP1GAP2|ENST00000574515.1	+	2991344,2995336,2998220,3005340,3005954,3008010	2991397,2995466,2998376,3005440,3006041,3008090	0.542857
airway_epithelial_cell	chr17	76551108	76551127	76551126	-	High_confidence	12	12	25	1.039479	3.762267	chr17	76550828	76551081	SINE|MIR|MIRb	-	chr17	76528533	76551175	CYGB|ENST00000589145.1	-	76528533,76530978,76531459,76550861	76528611,76531142,76531691,76551175	0.760000
airway_epithelial_cell	chr11	5619752	5619753	5619752	+	High_confidence	9	9	13	0.540529	3.418296	chr11	5619688	5619999	SINE|Alu|AluSx1	-	chr11	5619763	5644398	TRIM34|ENST00000514226.5	+	5619763,5632254,5633803,5634630,5641166,5642405,5642816,5643143	5620023,5632754,5633899,5634861,5641189,5642506,5642843,5644398	0.923077
airway_epithelial_cell	chr17	50271485	50271488	50271487	+	High_confidence	109	204	204	8.482150	5.496448	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	0.990196
airway_epithelial_cell	chr6	140858799	140858836	140858799	-	RAMPAGE_only	7	7	16	0.665267	3.625000	chr6	140858706	140858997	SINE|Alu|AluJb	-	chr6	140845957	140852924	AL035446.1|ENST00000455011.1	-	140845957,140852818	140846304,140852924	1.000000
airway_epithelial_cell	chr15	43133115	43133135	43133134	+	High_confidence	6	6	13	0.540529	2.855389	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133143	43148788	TMEM62|ENST00000569535.5	+	43133143,43135511,43146492,43148754	43133402,43135649,43146634,43148788	0.769231
airway_epithelial_cell	chr20	52105663	52105666	52105665	-	High_confidence	14	21	26	1.081058	4.083856	chr20	52105641	52105800	DNA|hAT-Charlie|MER5A1	-	chr20	52084010	52105644	ZFP64|ENST00000371523.8	-	52084010,52088391,52097372,52098437,52105131	52085266,52088643,52097435,52098587,52105644	0.961538
airway_epithelial_cell	chr9	128684430	128684480	128684459	-	RAMPAGE_only	19	19	99	4.116338	4.699965	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.717172
airway_epithelial_cell	chr11	47214671	47214672	47214671	+	High_confidence	10	10	14	0.582108	3.324863	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214569	47234653	DDB2|ENST00000614825.4	+	47214569,47215072,47216335,47216857,47232813,47234572	47214674,47215263,47216472,47217049,47232959,47234653	0.642857
airway_epithelial_cell	chr17	28525381	28525382	28525381	+	RAMPAGE_only	5	5	8	0.332633	3.000000	chr17	28525111	28525398	DNA|TcMar-Tigger|Tigger19b	+	chr17	28523940	28538896	FOXN1|ENST00000226247.2	+	28523940,28524502,28527250,28529093,28530748,28534330,28534706,28537116	28524092,28524967,28527361,28529224,28530845,28534538,28535198,28538896	0.750000
airway_epithelial_cell	chr20	44959322	44959364	44959363	+	RAMPAGE_only	4	4	10	0.415792	3.121928	chr20	44959390	44959947	LINE|L2|L2b	+	chr20	44966473	45079959	STK4|ENST00000372806.7	+	44966473,44972077,44978442,44981828,44987131,44995089,44997168,45000391,45001166,45024972,45075017	44966603,44972158,44978571,44981943,44987296,44995257,44997306,45000520,45001353,45025130,45079959	0.800000
airway_epithelial_cell	chr7	134527596	134527597	134527596	+	High_confidence	860	870	952	39.583367	7.174707	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.981092
airway_epithelial_cell	chr17	909562	909563	909562	+	High_confidence	4	4	6	0.249475	2.584963	chr17	909532	909837	SINE|Alu|AluYm1	-	chr17	909631	911212	AC087392.1|ENST00000576252.1	+	909631,910693	909932,911212	1.000000
airway_epithelial_cell	chr11	71745881	71745915	71745881	+	High_confidence	38	38	223	9.272154	5.900788	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.919283
airway_epithelial_cell	chr8	143281646	143281687	143281686	-	High_confidence	38	46	153	6.361613	5.032311	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.660131
airway_epithelial_cell	chr19	39485793	39485803	39485802	+	High_confidence	8	9	13	0.540529	3.026987	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	1.000000
airway_epithelial_cell	chr4	173369515	173369548	173369533	-	High_confidence	4	5	19	0.790004	3.530493	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363779	173370446	AC097534.2|ENST00000609153.1	-	173363779,173369433,173370291	173364198,173369610,173370446	0.842105
airway_epithelial_cell	chr11	64318682	64318734	64318733	+	High_confidence	7	7	24	0.997900	3.641250	chr11	64318595	64318908	SINE|Alu|AluSx	-	chr11	64318181	64321740	PRDX5|ENST00000352435.8	+	64318181,64319733,64320864,64321006,64321585	64318386,64319868,64320903,64321068,64321740	0.750000
airway_epithelial_cell	chr10	34973974	34974006	34973990	+	High_confidence	8	8	40	1.663167	4.618736	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34973983	34975576	AL392046.2|ENST00000635301.1	+	34973983,34974193,34974657	34974088,34974282,34975576	0.825000
airway_epithelial_cell	chr5	177883461	177883473	177883461	+	RAMPAGE_only	5	5	16	0.665267	3.189898	chr5	177883451	177883608	SINE|MIR|MIR	+	chr5	177875521	177884272	AC106795.1|ENST00000506672.5	+	177875521,177876531,177878643,177882368,177882651,177883666	177875860,177876688,177878848,177882530,177882752,177884272	0.875000
airway_epithelial_cell	chr6	26474341	26474346	26474341	+	RAMPAGE_only	3	5	11	0.457371	3.459432	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.727273
airway_epithelial_cell	chr16	68834405	68834445	68834405	+	RAMPAGE_only	9	9	28	1.164217	3.921030	chr16	68834273	68834516	SINE|Alu|AluJr	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.500000
airway_epithelial_cell	chr12	27012945	27012972	27012961	-	High_confidence	8	8	28	1.164217	4.351823	chr12	27012717	27013014	SINE|Alu|AluSg	+	chr12	26996850	27013014	TM7SF3|ENST00000512808.2	-	26996850,26999525,27003235,27012709	26996862,26999676,27003390,27013014	0.571429
airway_epithelial_cell	chr11	67848641	67848702	67848701	-	High_confidence	15	15	110	4.573708	5.225356	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67845203	67848688	MSTRG.5739.1	-	67845203,67848565	67847989,67848688	0.954545
airway_epithelial_cell	chr11	307580	307581	307580	-	RAMPAGE_only	7	7	7	0.291054	2.807355	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	0.714286
airway_epithelial_cell	chr3	157533600	157533615	157533600	-	High_confidence	6	6	11	0.457371	2.550341	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157460214	157533606	VEPH1|ENST00000487753.5	-	157460214,157470313,157495211,157533512	157460355,157470529,157495506,157533606	1.000000
airway_epithelial_cell	chr16	1963507	1963526	1963507	-	High_confidence	2	2	9	0.374213	2.947703	chr16	1963335	1963598	SINE|Alu|AluSx3	+	chr16	1962060	1963256	RPS2|ENST00000526586.6	-	1962060,1962735,1963148	1962656,1962909,1963256	1.000000
airway_epithelial_cell	chr15	90467511	90467554	90467553	+	RAMPAGE_only	3	3	18	0.748425	3.725481	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90388260	90500371	IQGAP1|ENST00000560738.1	+	90388260,90390773,90466046,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390824,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500371	1.000000
airway_epithelial_cell	chr12	69765674	69765697	69765674	+	RAMPAGE_only	5	5	21	0.873163	4.011365	chr12	69765606	69765757	LINE|L1|L1PA15-16	-	chr12	69756485	69812834	RAB3IP|ENST00000550647.5	+	69756485,69784719,69794436,69795140,69800208,69812777	69756663,69784815,69794514,69795344,69800337,69812834	0.714286
airway_epithelial_cell	chr12	13376710	13376729	13376710	-	High_confidence	2	3	8	0.332633	2.521641	chr12	13376413	13376888	LTR|ERVL|MLT2B1	-	chr12	13371088	13376711	LINC01559|ENST00000318426.6	-	13371088,13376223,13376513	13373438,13376425,13376711	0.625000
airway_epithelial_cell	chr1	1655448	1655462	1655461	-	RAMPAGE_only	4	4	9	0.374213	2.750000	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.777778
airway_epithelial_cell	chr13	29647543	29647585	29647543	+	High_confidence	3	3	20	0.831583	3.308695	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.850000
airway_epithelial_cell	chrX	23883548	23883573	23883572	-	RAMPAGE_only	10	10	24	0.997900	4.142915	chrX	23883103	23883918	LTR|ERV1|LTR1A1	+	chrX	23833362	23880901	APOO|ENST00000439528.5	-	23833362,23840312,23856301,23858641,23868592,23874402,23878914,23880844	23833510,23840377,23856382,23858733,23868688,23874457,23879034,23880901	0.750000
airway_epithelial_cell	chr7	40843871	40843924	40843882	+	RAMPAGE_only	12	13	45	1.871063	4.489877	chr7	40843519	40843915	LINE|L2|L2a	-	chr7	40815645	40860763	MSTRG.28917.10	+	40815645,40860315	40815803,40860763	0.933333
airway_epithelial_cell	chr12	8681599	8681600	8681599	+	High_confidence	30	31	41	1.704746	4.881704	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.536585
airway_epithelial_cell	chr2	160195378	160195428	160195427	-	RAMPAGE_only	4	4	8	0.332633	2.750000	chr2	160195366	160195442	LINE|CR1|L3	-	chr2	160101635	160200252	ITGB6|ENST00000428609.6	-	160101635,160107678,160112079,160123790,160126378,160137433,160138064,160141981,160169211,160172568,160173973,160195368,160196215,160200002	160101834,160107845,160112199,160123888,160126601,160137851,160138199,160142071,160169307,160172730,160174139,160195615,160196420,160200252	0.875000
airway_epithelial_cell	chr20	31566028	31566084	31566028	+	High_confidence	28	36	215	8.939521	5.578406	chr20	31566028	31566111	SINE|MIR|MIR3	+	chr20	31566153	31569567	HM13|ENST00000487281.1	+	31566153,31567639,31569119	31566295,31567806,31569567	0.981395
airway_epithelial_cell	chr14	67478665	67478686	67478665	-	RAMPAGE_only	14	14	38	1.580008	4.810673	chr14	67478346	67478698	LINE|L2|L2c	+	chr14	67470265	67515304	TMEM229B|NM_182526.2	-	67470265,67486999,67515085	67473941,67487172,67515304	0.578947
airway_epithelial_cell	chr4	79206659	79206695	79206694	+	RAMPAGE_only	11	11	21	0.873163	3.784942	chr4	79206338	79206927	LTR|ERV1|LTR10C	+	chr4	79197540	79308655	LINC01088|ENST00000512130.5	+	79197540,79306690,79308272	79197644,79306728,79308655	0.666667
airway_epithelial_cell	chr12	55930641	55930642	55930641	+	High_confidence	19	19	19	0.790004	3.681881	chr12	55930357	55930665	SINE|Alu|AluSc8	-	chr12	55930971	55954015	DGKA|ENST00000331886.9	+	55930971,55936422,55937016,55937407,55937977,55938510,55938914,55939185,55939414,55940081,55940313,55940623,55940896,55941251,55941509,55941997,55942173,55951622,55952034,55952340,55952733,55953039,55953349,55953684	55931344,55936567,55937090,55937543,55938052,55938560,55938989,55939305,55939529,55940170,55940433,55940722,55940980,55941325,55941584,55942083,55942263,55951783,55952099,55952431,55952932,55953160,55953410,55954015	0.789474
airway_epithelial_cell	chr17	41581027	41581041	41581040	-	RAMPAGE_only	4	4	8	0.332633	2.750000	chr17	41580826	41581048	SINE|MIR|MIRb	-	chr17	41565840	41572058	KRT9|ENST00000246662.8	-	41565840,41567232,41568161,41568507,41569425,41569858,41570137,41571350	41566152,41567750,41568385,41568633,41569587,41570015,41570220,41572058	1.000000
airway_epithelial_cell	chr1	222064772	222064773	222064772	-	High_confidence	33	35	36	1.496850	4.071582	chr1	222064600	222064953	LTR|ERVL-MaLR|THE1B	-	chr1	222041704	222064763	LINC01705|ENST00000438158.1	-	222041704,222058413,222064684	222041922,222058678,222064763	0.722222
airway_epithelial_cell	chr1	151166660	151166686	151166685	+	High_confidence	7	7	34	1.413692	4.327820	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	0.852941
airway_epithelial_cell	chr2	96303166	96303178	96303166	-	RAMPAGE_only	10	11	19	0.790004	3.461320	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.947368
airway_epithelial_cell	chr10	6737490	6737492	6737491	+	High_confidence	29	44	50	2.078958	4.522055	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.940000
airway_epithelial_cell	chr4	79206603	79206623	79206615	+	RAMPAGE_only	3	3	8	0.332633	2.500000	chr4	79206338	79206927	LTR|ERV1|LTR10C	+	chr4	79197540	79308655	LINC01088|ENST00000512130.5	+	79197540,79306690,79308272	79197644,79306728,79308655	0.750000
airway_epithelial_cell	chr7	40815652	40815714	40815654	+	High_confidence	75	146	523	21.745904	6.139246	chr7	40810256	40816712	LINE|L1|L1PA16	-	chr7	40815645	40860763	MSTRG.28917.10	+	40815645,40860315	40815803,40860763	0.940727
airway_epithelial_cell	chr20	37298760	37298761	37298760	+	RAMPAGE_only	23	23	23	0.956321	3.757925	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
airway_epithelial_cell	chr17	35432451	35432452	35432451	-	High_confidence	6	8	8	0.332633	2.750000	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	1.000000
airway_epithelial_cell	chr19	51027569	51027668	51027667	-	High_confidence	51	53	377	15.675346	6.647258	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.901857
airway_epithelial_cell	chr13	109272202	109272203	109272202	+	RAMPAGE_only	87	88	124	5.155817	5.718201	chr13	109271794	109272374	LTR|ERV1|LTR9	+	chr13	109269633	109273838	AL161431.1|ENST00000618966.1	+	109269633	109273838	0.862903
airway_epithelial_cell	chr3	122800237	122800242	122800237	+	RAMPAGE_only	5	5	9	0.374213	2.725481	chr3	122799141	122801328	LINE|L2|L2a	-	chr3	122795083	122879748	DIRC2|ENST00000477647.1	+	122795083,122826799,122833316,122845762,122856306,122860074,122872414,122879262	122795535,122827065,122833446,122845871,122856374,122860202,122872597,122879748	0.666667
airway_epithelial_cell	chr19	35115816	35115923	35115834	+	High_confidence	87	87	535	22.244854	6.050578	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_021910.2	+	35115827,35116263,35119167,35119362,35121077,35121221,35122764,35123270,35123440	35115959,35116359,35119251,35119416,35121110,35121245,35122954,35123308,35124324	0.981308
airway_epithelial_cell	chr11	14337249	14337263	14337262	-	RAMPAGE_only	9	9	23	0.956321	4.368523	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14279396	14342094	RRAS2|ENST00000531807.5	-	14279396,14281601,14294470,14294759,14295767,14341809	14279424,14281720,14294579,14294862,14295855,14342094	0.521739
airway_epithelial_cell	chr18	30991966	30991992	30991966	-	RAMPAGE_only	6	6	18	0.748425	3.969816	chr18	30991883	30992175	SINE|Alu|AluY	+	chr18	30990007	31042741	DSC3|ENST00000360428.8	-	30990007,30996790,31001617,31004141,31006906,31008015,31008268,31018070,31018665,31022335,31024348,31025759,31029508,31030972,31032191,31042591	30994372,30997048,31001739,31004366,31007131,31008158,31008525,31018256,31018800,31022502,31024493,31025915,31029628,31031172,31032276,31042741	0.944444
airway_epithelial_cell	chr1	9894299	9894341	9894340	-	RAMPAGE_only	4	4	14	0.582108	3.378783	chr1	9894071	9894347	LINE|L1|L1MC4	-	chr1	9850449	9893237	CTNNBIP1|ENST00000377258.5	-	9850449,9871186,9871968,9877904,9893008	9850776,9871277,9872088,9877989,9893237	0.785714
airway_epithelial_cell	chr4	139647334	139647363	139647357	-	RAMPAGE_only	59	59	146	6.070558	6.610000	chr4	139647213	139647611	LINE|L2|L2b	+	chr4	139506041	139606699	MSTRG.24768.4	-	139506041,139517884,139520276,139523353,139529030,139533164,139546919,139604400,139604768,139606597	139511843,139518042,139520394,139523435,139529220,139533366,139547049,139604482,139604810,139606699	0.520548
airway_epithelial_cell	chr10	89701903	89701918	89701917	+	High_confidence	3	3	10	0.415792	3.169925	chr10	89701885	89702085	SINE|MIR|MIR	+	chr10	89701678	89711090	KIF20B|ENST00000447580.1	+	89701678,89705293,89709166,89709344,89709926,89710960	89701717,89705441,89709253,89709461,89710065,89711090	0.800000
airway_epithelial_cell	chr19	5680196	5680252	5680240	-	High_confidence	30	30	133	5.530029	5.605791	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.962406
airway_epithelial_cell	chr13	43062201	43062239	43062226	+	RAMPAGE_only	102	106	270	11.226375	4.990060	chr13	43062071	43062490	LTR|ERVL|LTR33	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.992593
airway_epithelial_cell	chr6	63805796	63805797	63805796	+	RAMPAGE_only	7	7	7	0.291054	2.521641	chr6	63805602	63805978	LTR|ERVL-MaLR|THE1D	+	chr6	63806835	63822642	AL354719.2|ENST00000429530.1	+	63806835,63821239	63806886,63822642	0.571429
airway_epithelial_cell	chr19	45450734	45450766	45450757	-	RAMPAGE_only	13	13	49	2.037379	5.110902	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	0.612245
airway_epithelial_cell	chr18	31093564	31093611	31093564	-	RAMPAGE_only	6	6	25	1.039479	4.213661	chr18	31093142	31093519	LINE|L1|L1PA10	-	chr18	31065973	31102004	DSC2|ENST00000251081.6	-	31065973,31068298,31068893,31070725,31071604,31074682,31079846,31080095,31082237,31082925,31086575,31087668,31089438,31091027,31092100,31093558,31101902	31068212,31068344,31069151,31070850,31071841,31074907,31079989,31080352,31082423,31083060,31086742,31087813,31089594,31091147,31092300,31093643,31102004	1.000000
airway_epithelial_cell	chr7	99358774	99358775	99358774	+	High_confidence	8	8	8	0.332633	2.500000	chr7	99358536	99358830	SINE|Alu|AluSp	-	chr7	99358665	99366214	ARPC1A|ENST00000463009.1	+	99358665,99359544,99363542,99365890	99358775,99359738,99363633,99366214	1.000000
airway_epithelial_cell	chr1	201361651	201361652	201361651	-	RAMPAGE_only	5	8	8	0.332633	2.500000	chr1	201361629	201361711	SINE|MIR|MIR3	-	chr1	201359007	201363350	TNNT2|ENST00000476888.5	-	201359007,201359622,201361278,201361950,201362385,201363295	201359255,201359663,201361369,201362022,201362394,201363350	1.000000
airway_epithelial_cell	chrX	56810773	56810774	56810773	+	RAMPAGE_only	10	10	10	0.415792	2.521928	chrX	56805824	56812210	LINE|L1|L1PA7	-	chrX	56729353	56817626	NBDY|ENST00000423617.2	+	56729353,56817319	56729589,56817626	0.900000
airway_epithelial_cell	chr3	33864011	33864126	33864078	+	RAMPAGE_only	4	6	41	1.704746	4.192322	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.975610
airway_epithelial_cell	chr20	24930628	24930660	24930659	+	High_confidence	24	24	173	7.193196	5.431787	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930635	24932983	MSTRG.20105.1	+	24930635,24931346	24930774,24932983	0.988439
airway_epithelial_cell	chr7	148784335	148784350	148784349	+	RAMPAGE_only	4	4	8	0.332633	2.500000	chr7	148784291	148784392	SINE|5S-Deu-L2|AmnSINE1	-	chr7	148729998	148800707	CUL1|ENST00000617797.1	+	148729998,148753975,148754081,148756982,148759303,148759547,148760332,148766560,148767618,148783782,148783970,148786550,148786988,148788556,148789749,148790309,148792725,148797811,148797936,148798571,148799274,148800501	148730262,148754009,148754150,148757150,148759354,148759638,148760496,148766723,148767749,148783890,148784077,148786599,148787120,148788674,148789826,148790441,148792818,148797859,148798019,148798677,148799388,148800707	1.000000
airway_epithelial_cell	chr3	139344537	139344548	139344547	+	High_confidence	416	416	894	37.171775	5.972642	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.966443
airway_epithelial_cell	chr5	172958855	172958919	172958918	+	High_confidence	43	53	211	8.773204	5.162751	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.943128
airway_epithelial_cell	chr14	102235451	102235481	102235458	-	High_confidence	4	4	11	0.457371	3.459432	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.818182
airway_epithelial_cell	chr10	93431409	93431466	93431448	-	RAMPAGE_only	8	10	41	1.704746	4.375487	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	1.000000
airway_epithelial_cell	chrX	152920390	152920394	152920390	+	High_confidence	4	4	12	0.498950	3.095795	chrX	152920417	152920551	SINE|MIR|MIR3	+	chrX	152920348	152973473	ZNF185|ENST00000426821.6	+	152920348,152920706,152922172,152931671,152932872,152938073,152945266,152959698,152963838,152965446,152967166,152969381,152970442,152971273	152920411,152920748,152922256,152931776,152932971,152938163,152945464,152959896,152963949,152965527,152967238,152969484,152970541,152973473	0.916667
airway_epithelial_cell	chr4	81154143	81154175	81154174	-	High_confidence	4	4	15	0.623688	3.664498	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81087369	81154157	PRKG2|NM_001282480.1	-	81087369,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153429,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153555,81153721,81154157	0.933333
airway_epithelial_cell	chr11	14337292	14337293	14337292	-	RAMPAGE_only	5	5	8	0.332633	2.521641	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14279396	14342094	RRAS2|ENST00000531807.5	-	14279396,14281601,14294470,14294759,14295767,14341809	14279424,14281720,14294579,14294862,14295855,14342094	0.625000
airway_epithelial_cell	chr12	48489746	48489780	48489746	+	High_confidence	12	12	42	1.746325	4.701376	chr12	48489725	48490021	SINE|Alu|AluSx	-	chr12	48489292	48496386	MSTRG.7206.5	+	48489292,48490811,48492946,48494797,48496180	48489354,48490836,48492995,48494979,48496386	0.952381
airway_epithelial_cell	chr3	101518636	101518668	101518636	+	High_confidence	5	5	21	0.873163	3.584184	chr3	101518577	101518728	LINE|L2|L2	-	chr3	101518866	101523887	FAM172BP|NR_036433.2	+	101518866,101521881	101519155,101523887	0.857143
airway_epithelial_cell	chr2	9102928	9102980	9102979	+	High_confidence	4	4	16	0.665267	3.500000	chr2	9102644	9103077	LTR|ERV1|MER65C	-	chr2	9103439	9104581	AC093904.2|ENST00000495580.1	+	9103439,9104034,9104435	9103585,9104160,9104581	0.562500
airway_epithelial_cell	chr12	19397915	19397918	19397915	+	RAMPAGE_only	3	3	6	0.249475	2.584963	chr12	19397954	19398081	SINE|Alu|AluSz	+	chr12	19404065	19518192	AEBP2|ENST00000541908.5	+	19404065,19462509,19473247,19493799,19500096,19512397,19514670,19518086	19404124,19462717,19473355,19493986,19500221,19512465,19514784,19518192	0.833333
airway_epithelial_cell	chr9	129489081	129489145	129489125	+	High_confidence	5	5	21	0.873163	3.653757	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.952381
body_of_pancreas_female_adult_51_years	chr12	4021303	4021381	4021375	-	High_confidence	3	3	16	1.526394	3.506891	chr12	4018993	4021963	LTR|ERV1|HERVH-int	+	chr12	3909280	4021606	STRG.108031.1	-	3909280,4020915	3909320,4021606	0.750000
body_of_pancreas_female_adult_51_years	chr10	116603841	116603861	116603860	+	RAMPAGE_only	3	3	8	0.763197	2.500000	chr10	116603610	116603898	SINE|Alu|AluSz	+	chr10	116594729	116609175	PNLIPRP1|ENST00000482833.1	+	116594729,116596213,116597827,116598046,116601071,116604029,116605385,116609052	116594864,116596322,116597947,116598166,116601201,116604138,116605553,116609175	0.500000
body_of_pancreas_female_adult_51_years	chr4	170226587	170226605	170226587	+	High_confidence	17	19	28	2.671189	4.384517	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.821429
body_of_pancreas_female_adult_51_years	chr17	2975660	2975667	2975660	+	RAMPAGE_only	5	8	15	1.430994	3.506891	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2963734	3036042	STRG.137272.2	+	2963734,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3033391	2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3032449,3036042	0.800000
body_of_pancreas_female_adult_51_years	chr9	136341950	136341968	136341950	+	High_confidence	10	10	22	2.098791	3.921928	chr9	136341826	136341950	SINE|Alu|AluJr	-	chr9	136341936	136350137	STRG.91159.5	+	136341936,136348696,136349586	136342097,136348767,136350137	0.545455
body_of_pancreas_female_adult_51_years	chr3	151766780	151766781	151766780	+	RAMPAGE_only	7	7	7	0.667797	2.521641	chr3	151766184	151766973	LINE|L1|L1MC3	-	chr3	151770473	151784421	AADACP1|ENST00000561502.5	+	151770473,151773429,151775694,151776803,151783831	151770611,151773652,151775764,151776975,151784421	0.571429
body_of_pancreas_female_adult_51_years	chr12	4018886	4018887	4018886	+	RAMPAGE_only	65	65	79	7.536569	5.377339	chr12	4018540	4018991	LTR|ERV1|LTR7	+	chr12	4012838	4019237	STRG.108075.1	+	4012838,4013691,4018981	4013114,4013786,4019237	0.645570
body_of_pancreas_female_adult_51_years	chr15	75347039	75347082	75347039	+	High_confidence	3	3	11	1.049396	2.913977	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.818182
body_of_pancreas_female_adult_51_years	chr12	16353884	16353885	16353884	+	High_confidence	6	6	6	0.572398	2.584963	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.500000
body_of_pancreas_female_adult_51_years	chr10	5768362	5768383	5768382	-	RAMPAGE_only	2	2	7	0.667797	2.521641	chr10	5768371	5769005	LINE|L1|L1MB3	+	chr10	5765228	5769389	GDI2|ENST00000479928.1	-	5765228,5766240,5768212	5766152,5766638,5769389	1.000000
body_of_pancreas_female_adult_51_years	chr3	114759249	114759301	114759276	-	High_confidence	8	9	28	2.671189	4.356558	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.500000
body_of_pancreas_female_adult_51_years	chr10	122838509	122838515	122838509	-	RAMPAGE_only	4	4	10	0.953996	2.846439	chr10	122838499	122838623	DNA|hAT-Charlie|MER5A	+	chr10	122832157	122843746	STRG.99089.7	-	122832157,122834705,122836177,122837403	122833940,122835097,122837048,122843746	1.000000
body_of_pancreas_female_adult_51_years	chr9	123179187	123179221	123179220	-	RAMPAGE_only	5	6	9	0.858597	3.000000	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.777778
body_of_pancreas_female_adult_51_years	chrX	120140707	120140710	120140707	+	RAMPAGE_only	6	6	12	1.144795	2.913977	chrX	120140230	120140875	LTR|ERV1|LTR9C	+	chrX	120036235	120146854	RHOXF1-AS1|ENST00000553843.5	+	120036235,120120851,120138997,120143722,120145637	120036532,120121139,120139119,120143900,120146854	0.916667
body_of_pancreas_female_adult_51_years	chr3	114624940	114625007	114625006	-	High_confidence	10	15	57	5.437778	4.496385	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.824561
body_of_pancreas_female_adult_51_years	chr15	89462828	89462831	89462828	+	High_confidence	104	105	175	16.694932	5.790992	chr15	89462544	89462974	LTR|ERV1|MER51A	+	chr15	89462856	89465281	STRG.131669.2	+	89462856	89465281	0.925714
body_of_pancreas_female_adult_51_years	chr5	133089620	133089678	133089677	+	RAMPAGE_only	6	6	18	1.717193	3.381580	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133091190	133104477	STRG.55888.1	+	133091190,133092699,133096097,133097160,133099544,133101758,133103864,133104232	133091374,133092789,133096250,133097286,133099652,133101878,133104026,133104477	0.833333
body_of_pancreas_female_adult_51_years	chr17	4143196	4143215	4143199	+	High_confidence	22	26	51	4.865380	4.410229	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.960784
body_of_pancreas_female_adult_51_years	chr6	31186084	31186118	31186117	-	High_confidence	86	91	217	20.701716	6.306408	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31185191	31186451	STRG.60293.1	-	31185191	31186451	0.723502
body_of_pancreas_female_adult_51_years	chr7	134527596	134527597	134527596	+	High_confidence	8	8	10	0.953996	2.721928	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.800000
body_of_pancreas_female_adult_51_years	chr17	81845356	81845379	81845356	-	High_confidence	4	4	9	0.858597	2.641604	chr17	81845321	81845418	SINE|Alu|AluJo	+	chr17	81843491	81845456	P4HB|ENST00000473021.1	-	81843491,81845143	81844092,81845456	1.000000
body_of_pancreas_female_adult_51_years	chr16	20323390	20323435	20323390	-	High_confidence	24	31	65	6.200975	5.250404	chr16	20323235	20323476	SINE|MIR|MIR	+	chr16	20318401	20323753	GP2|ENST00000573897.5	-	20318401,20319619,20320261,20322868,20323684	20318430,20319768,20320473,20322979,20323753	0.630769
body_of_pancreas_female_adult_51_years	chr4	107682416	107682430	107682429	-	High_confidence	15	17	32	3.052788	4.542748	chr4	107682312	107682592	DNA|TcMar-Tigger|Tigger17c	-	chr4	107656908	107682274	STRG.45345.3	-	107656908,107659958,107682014	107657007,107660072,107682274	0.718750
body_of_pancreas_female_adult_51_years	chr21	28090339	28090410	28090409	+	High_confidence	8	8	31	2.957388	3.394050	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	1.000000
body_of_pancreas_female_adult_51_years	chr19	49086416	49086547	49086546	+	High_confidence	21	22	84	8.013567	4.886499	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.988095
body_of_pancreas_female_adult_51_years	chr3	134485443	134485490	134485443	-	High_confidence	6	6	31	2.957388	3.882607	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.806452
body_of_pancreas_female_adult_51_years	chr5	151687233	151687251	151687233	-	High_confidence	5	5	25	2.384990	4.133661	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.880000
body_of_pancreas_female_adult_51_years	chr19	20423678	20423704	20423701	-	RAMPAGE_only	6	7	27	2.575790	4.208410	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.666667
body_of_pancreas_female_adult_51_years	chr10	65570509	65570522	65570521	+	High_confidence	8	9	33	3.148187	4.536670	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.636364
body_of_pancreas_female_adult_51_years	chr9	92536651	92536704	92536703	-	High_confidence	5	5	16	1.526394	3.373557	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.937500
body_of_pancreas_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	138	166	277	26.425692	5.319260	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.963899
body_of_pancreas_female_adult_51_years	chr3	167462483	167462539	167462493	-	RAMPAGE_only	4	4	28	2.671189	3.699514	chr3	167462255	167462664	LTR|ERVL-MaLR|MLT1B	-	chr3	167459676	167471839	STRG.38537.7	-	167459676,167467054,167471587	167465673,167469581,167471839	1.000000
body_of_pancreas_female_adult_51_years	chr10	116614456	116614466	116614456	+	High_confidence	39	39	96	9.158363	5.952822	chr10	116614299	116614693	LTR|ERVL-MaLR|MLT1A1	+	chr10	116614459	116618013	STRG.98966.20	+	116614459,116616740	116614614,116618013	0.718750
body_of_pancreas_female_adult_51_years	chr14	102235451	102235459	102235458	-	High_confidence	6	6	11	1.049396	2.921928	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.727273
body_of_pancreas_female_adult_51_years	chr1	149229367	149229368	149229367	-	High_confidence	14	15	19	1.812593	3.787144	chr1	149229335	149229457	SINE|MIR|MIR3	+	chr1	149190445	149229475	STRG.8861.3	-	149190445,149197995,149198360,149201013,149229292	149190531,149198171,149198484,149201090,149229475	0.684211
body_of_pancreas_female_adult_51_years	chr6	31186532	31186568	31186567	-	High_confidence	23	23	62	5.914776	5.119102	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31185191	31186451	STRG.60293.1	-	31185191	31186451	0.983871
body_of_pancreas_female_adult_51_years	chr19	11507462	11507490	11507462	-	High_confidence	3	4	10	0.953996	2.846439	chr19	11507282	11507445	SINE|Alu|FRAM	-	chr19	11506074	11507709	ECSIT|ENST00000585898.1	-	11506074,11507456	11506428,11507709	1.000000
body_of_pancreas_female_adult_51_years	chr19	48753676	48753677	48753676	-	High_confidence	89	92	94	8.967563	5.825460	chr19	48753519	48753902	LTR|ERVK|LTR13A	-	chr19	48748010	48753660	FUT1|ENST00000645652.1	-	48748010,48752489,48752891,48753324,48753647	48751283,48752725,48753122,48753563,48753660	0.829787
body_of_pancreas_female_adult_51_years	chr3	136625270	136625311	136625270	-	RAMPAGE_only	25	25	42	4.006784	4.784184	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.761905
body_of_pancreas_female_adult_51_years	chr15	90233262	90233271	90233270	-	High_confidence	3	3	8	0.763197	2.521641	chr15	90233112	90233301	SINE|MIR|MIRb	+	chr15	90232666	90233951	STRG.131836.2	-	90232666,90232834,90233834	90232809,90233703,90233951	0.500000
body_of_pancreas_female_adult_51_years	chrX	151958581	151958582	151958581	-	RAMPAGE_only	9	9	9	0.858597	2.947703	chrX	151958580	151958655	DNA|DNA|MER135	-	chrX	151953124	151959723	GABRE|ENST00000486255.1	-	151953124,151955367,151955707	151955084,151955567,151959723	1.000000
body_of_pancreas_female_adult_51_years	chr20	45312859	45312901	45312860	+	RAMPAGE_only	12	15	25	2.384990	3.973661	chr20	45312711	45313024	SINE|Alu|AluJb	+	chr20	45306850	45316959	STRG.152958.4	+	45306850,45308142,45311588,45314034,45314412,45316186,45316476,45316685	45306944,45309692,45313605,45314144,45314565,45316342,45316580,45316959	1.000000
body_of_pancreas_female_adult_51_years	chr5	34244741	34244781	34244753	-	High_confidence	4	4	26	2.480390	3.893661	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.576923
body_of_pancreas_female_adult_51_years	chr2	232816731	232816766	232816731	+	RAMPAGE_only	7	7	23	2.194191	4.110093	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	1.000000
body_of_pancreas_female_adult_51_years	chr1	21987376	21987377	21987376	+	High_confidence	27	27	32	3.052788	2.861929	chr1	21987188	21987470	SINE|Alu|AluSg7	+	chr1	21987480	21987777	RN7SL386P|ENST00000485776.3	+	21987480	21987777	0.875000
body_of_pancreas_female_adult_51_years	chr16	20310803	20311131	20310920	-	RAMPAGE_only	1722	1778	6677	636.983205	7.640543	chr16	20310748	20311056	SINE|Alu|AluSx1	-	chr16	20310488	20327507	GP2|ENST00000341642.9	-	20310488,20314656,20315955,20317212,20318184,20319619,20320261,20322868,20326337,20327466	20311281,20314701,20316040,20317375,20318430,20319768,20320473,20322979,20326467,20327507	0.899805
body_of_pancreas_female_adult_51_years	chr21	39657322	39657347	39657322	+	High_confidence	3	3	9	0.858597	2.725481	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657319	39662889	B3GALT5|NM_033171.2	+	39657319,39657784,39659752,39660559	39657599,39657893,39659912,39662889	0.666667
body_of_pancreas_female_adult_51_years	chr3	39407682	39407683	39407682	+	High_confidence	12	12	18	1.717193	3.572469	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.944444
body_of_pancreas_female_adult_51_years	chr4	158173024	158173025	158173024	-	High_confidence	9	9	9	0.858597	2.947703	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.888889
body_of_pancreas_female_adult_51_years	chr11	3477049	3477073	3477055	-	High_confidence	21	22	96	9.158363	5.485439	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3476132	3477036	STRG.99959.1	-	3476132,3476691	3476373,3477036	0.854167
body_of_pancreas_female_adult_51_years	chr10	116654852	116654853	116654852	+	RAMPAGE_only	8	10	10	0.953996	3.121928	chr10	116653174	116655283	LINE|L1|L1PA16	-	chr10	116653087	116659709	STRG.98967.4	+	116653087	116659709	1.000000
body_of_pancreas_female_adult_51_years	chr2	74148407	74148440	74148415	+	High_confidence	5	8	34	3.243587	4.057476	chr2	74148357	74148636	LINE|L2|L2	-	chr2	74148044	74149988	BOLA3-AS1|ENST00000533563.1	+	74148044,74148349,74148697	74148223,74148478,74149988	0.617647
body_of_pancreas_female_adult_51_years	chr14	100569561	100569636	100569593	-	High_confidence	6	6	21	2.003392	4.011365	chr14	100569527	100569624	LINE|L2|L2b	+	chr14	100538887	100569558	BEGAIN|ENST00000556188.5	-	100538887,100540495,100543857,100544999,100546500,100567910,100569426	100539315,100540579,100543965,100545066,100546662,100567939,100569558	0.666667
body_of_pancreas_female_adult_51_years	chr1	166850100	166850125	166850124	+	RAMPAGE_only	5	7	18	1.717193	3.175123	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.944444
body_of_pancreas_female_adult_51_years	chr7	7566469	7566534	7566514	-	High_confidence	50	57	285	27.188889	6.714109	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7552461	7566996	AC004982.2|ENST00000609497.5	-	7552461,7555155,7565913	7552922,7555189,7566996	0.968421
body_of_pancreas_female_adult_51_years	chr20	45312958	45312990	45312989	+	RAMPAGE_only	41	42	81	7.727369	4.631790	chr20	45312711	45313024	SINE|Alu|AluJb	+	chr20	45306850	45316959	STRG.152958.4	+	45306850,45308142,45311588,45314034,45314412,45316186,45316476,45316685	45306944,45309692,45313605,45314144,45314565,45316342,45316580,45316959	0.975309
body_of_pancreas_female_adult_51_years	chr7	152082452	152082467	152082465	+	RAMPAGE_only	2	4	8	0.763197	2.807355	chr7	152082186	152082768	LTR|ERV1|LTR10C	-	chr7	152079274	152104891	GALNT11|ENST00000422997.6	+	152079274,152094189,152100797,152103111	152079408,152094522,152100921,152104891	0.750000
body_of_pancreas_female_adult_51_years	chr1	184568398	184568411	184568398	+	High_confidence	6	6	24	2.289591	3.355389	chr1	184568204	184568449	LINE|L1|L1MB3	-	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	1.000000
body_of_pancreas_female_adult_51_years	chr8	109581048	109581091	109581081	-	High_confidence	9	9	41	3.911384	4.772186	chr8	109580602	109581257	LINE|L2|L2c	+	chr8	109575974	109581058	SYBU|ENST00000527707.5	-	109575974,109577867,109579798,109580878	109576013,109578017,109580002,109581058	0.756098
body_of_pancreas_female_adult_51_years	chr1	1721636	1721637	1721636	-	High_confidence	4	5	7	0.667797	2.584963	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1719165	1721879	CDK11A|ENST00000498810.1	-	1719165,1721595	1719455,1721879	0.571429
body_of_pancreas_female_adult_51_years	chr2	11345436	11345442	11345436	-	High_confidence	15	16	35	3.338986	4.686147	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11179758	11345407	ROCK2|NM_001321643.1	-	11179758,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345407	0.885714
body_of_pancreas_female_adult_51_years	chr5	42175235	42175254	42175253	-	High_confidence	5	5	14	1.335595	3.521641	chr5	42175074	42175255	LTR|ERVL-MaLR|MSTC	-	chr5	42155832	42175345	LOC101926960|NR_104635.1	-	42155832,42159336,42168462,42175152	42157411,42159446,42168587,42175345	0.785714
body_of_pancreas_female_adult_51_years	chr11	123855377	123855424	123855377	+	High_confidence	2	2	10	0.953996	2.947703	chr11	123854152	123856733	LINE|L1|L1PA10	+	chr11	123855062	123856948	STRG.106970.1	+	123855062	123856948	0.900000
body_of_pancreas_female_adult_51_years	chr5	139364666	139364670	139364666	+	High_confidence	3	3	7	0.667797	2.584963	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139364565	139369717	STRG.56242.1	+	139364565,139368732	139364743,139369717	0.857143
body_of_pancreas_female_adult_51_years	chr4	81154213	81154222	81154221	-	High_confidence	5	5	15	1.430994	3.240224	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	1.000000
body_of_pancreas_female_adult_51_years	chr4	186265459	186265465	186265464	+	High_confidence	4	4	9	0.858597	2.750000	chr4	186265210	186265540	SINE|Alu|AluSx3	+	chr4	186265944	186288780	F11|ENST00000403665.6	+	186265944,186267135,186271608,186273070,186274115,186275786,186276230,186280011,186280222,186280473,186284091,186285637,186286414,186287683,186288452	186266295,186267191,186271771,186273177,186274275,186275896,186276390,186280121,186280385,186280580,186284260,186285813,186286510,186287823,186288780	0.555556
body_of_pancreas_female_adult_51_years	chr7	130285205	130285206	130285205	+	RAMPAGE_only	8	10	11	1.049396	2.721928	chr7	130285128	130285263	LINE|L2|L2c	-	chr7	130266862	130289798	CPA2|NM_001869.2	+	130266862,130268928,130269668,130270692,130273075,130275148,130276627,130277825,130279462,130282103,130289559	130266952,130269010,130269803,130270788,130273177,130275247,130276738,130277916,130279662,130282188,130289798	0.909091
body_of_pancreas_female_adult_51_years	chr6	24383294	24383313	24383294	-	High_confidence	5	5	9	0.858597	2.947703	chr6	24383044	24383353	SINE|Alu|AluSp	+	chr6	24171754	24383292	DCDC2|NM_001195610.1	-	24171754,24178329,24205001,24278048,24288851,24290931,24301714,24301967,24353568,24357457,24383180	24174834,24178632,24205102,24278211,24288906,24291078,24301846,24302044,24353623,24357847,24383292	0.666667
body_of_pancreas_female_adult_51_years	chr6	31186398	31186464	31186398	-	High_confidence	19	22	42	4.006784	4.651379	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31185191	31186451	STRG.60293.1	-	31185191	31186451	0.976190
body_of_pancreas_female_adult_51_years	chr19	47751067	47751103	47751102	+	High_confidence	9	10	45	4.292983	4.383535	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47750177	47757005	NOP53|ENST00000595143.5	+	47750177,47750907,47751519,47752511,47754526,47754708,47755783,47756527,47756687,47756998	47750286,47751107,47751590,47752607,47754631,47754757,47755822,47756604,47756744,47757005	0.600000
body_of_pancreas_female_adult_51_years	chr13	40350367	40350446	40350410	-	High_confidence	16	22	50	4.769981	5.012470	chr13	40350403	40350604	SINE|MIR|MIR3	+	chr13	40203690	40350362	STRG.117617.1	-	40203690,40217577,40343956,40350108	40204518,40217750,40344205,40350362	0.760000
body_of_pancreas_female_adult_51_years	chr11	65382812	65382835	65382834	-	High_confidence	5	6	11	1.049396	3.277613	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.818182
body_of_pancreas_female_adult_51_years	chr6	140898421	140898422	140898421	-	High_confidence	4	4	7	0.667797	2.584963	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140575787	140898381	AL035446.2|ENST00000650553.1	-	140575787,140620907,140651477,140816131,140898187	140576557,140620995,140651561,140816230,140898381	0.571429
body_of_pancreas_female_adult_51_years	chr15	57451517	57451532	57451531	+	RAMPAGE_only	3	3	8	0.763197	3.000000	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
body_of_pancreas_female_adult_51_years	chr11	107441571	107441585	107441584	-	RAMPAGE_only	3	3	12	1.144795	2.663533	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	0.916667
body_of_pancreas_female_adult_51_years	chr12	15764153	15764159	15764158	-	RAMPAGE_only	28	41	73	6.964172	4.679273	chr12	15763995	15764357	LTR|ERVL-MaLR|THE1B	-	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.780822
body_of_pancreas_female_adult_51_years	chr2	159428348	159428357	159428356	-	RAMPAGE_only	8	8	13	1.240195	3.251629	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.538462
body_of_pancreas_female_adult_51_years	chr2	200889293	200889318	200889293	-	High_confidence	9	9	24	2.289591	4.142915	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.500000
body_of_pancreas_female_adult_51_years	chr11	33696930	33697036	33696930	-	High_confidence	5	5	42	4.006784	4.701376	chr11	33696789	33697100	LINE|L2|L2a	+	chr11	33665219	33696701	AL049629.1|ENST00000534431.1	-	33665219,33669523,33670914,33696585	33665564,33669645,33670979,33696701	0.500000
body_of_pancreas_female_adult_51_years	chr10	42654678	42654707	42654678	-	RAMPAGE_only	4	4	13	1.240195	3.392747	chr10	42654446	42654969	LTR|ERV1|HERV1_LTRa	+	chr10	42589083	42638837	ZNF33B|NM_001305040.1	-	42589083,42613887,42614281,42631928,42632294,42636919,42638473	42594699,42613968,42614358,42632024,42632439,42636972,42638837	0.615385
body_of_pancreas_female_adult_51_years	chr6	28354152	28354206	28354205	-	High_confidence	12	13	31	2.957388	4.418157	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.806452
body_of_pancreas_female_adult_51_years	chr12	24862298	24862325	24862324	-	RAMPAGE_only	6	6	26	2.480390	4.103910	chr12	24862308	24862762	LTR|ERV1|MER72	+	chr12	24812649	24881398	STRG.109692.2	-	24812649,24817662,24829822,24832722,24836510,24842081,24849785,24878529,24881300	24813900,24818049,24829897,24832863,24836596,24842224,24849949,24878649,24881398	0.730769
body_of_pancreas_female_adult_51_years	chr6	79631254	79631329	79631328	+	High_confidence	24	24	122	11.638753	5.766977	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.967213
body_of_pancreas_female_adult_51_years	chr1	237471146	237471229	237471146	+	High_confidence	64	64	198	18.889123	6.578894	chr1	237470691	237471420	LTR|ERV1|LTR9A1	-	chr1	237471169	237619028	STRG.13678.1	+	237471169,237491805,237492953,237496510,237500710,237503288,237506709,237511687,237530426,237548430,237550543,237566566,237569144,237589792,237590639,237591738,237593475,237595497,237602024,237610761,237614038,237617285,237618380	237471351,237491924,237493087,237496752,237500903,237503505,237506814,237511791,237530510,237548590,237550691,237566775,237569319,237590001,237590992,237591853,237593636,237595657,237602111,237610988,237614843,237617486,237619028	0.646465
body_of_pancreas_female_adult_51_years	chr10	110885060	110885061	110885060	+	High_confidence	6	6	6	0.572398	2.584963	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110885252	110898122	PDCD4|ENST00000462577.5	+	110885252,110887664,110890599,110894090,110894411,110895947,110898027	110885366,110887814,110890670,110894198,110894522,110896087,110898122	0.666667
body_of_pancreas_female_adult_51_years	chr1	1655395	1655410	1655409	-	RAMPAGE_only	21	24	36	3.434386	4.669925	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.722222
body_of_pancreas_female_adult_51_years	chr12	123390725	123390747	123390725	+	High_confidence	7	7	15	1.430994	3.324863	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.733333
body_of_pancreas_female_adult_51_years	chr11	287845	287941	287872	+	High_confidence	139	177	816	77.846083	7.530124	chr11	287740	288214	LINE|L2|L2a	-	chr11	288037	288987	AC136475.3|ENST00000534742.1	+	288037,288949	288811,288987	0.946078
body_of_pancreas_female_adult_51_years	chr9	105500687	105500717	105500688	+	High_confidence	11	15	27	2.575790	3.657385	chr9	105500002	105500744	LINE|L1|L1MCa	-	chr9	105500658	105552433	FSD1L|ENST00000374707.1	+	105500658,105506398,105508616,105512806,105534492,105535066,105539262,105546357	105500763,105506608,105508715,105512936,105534593,105535318,105539351,105552433	0.925926
body_of_pancreas_female_adult_51_years	chr19	46350838	46350850	46350838	+	RAMPAGE_only	2	2	7	0.667797	2.521641	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	1.000000
body_of_pancreas_female_adult_51_years	chr10	103181328	103181329	103181328	-	High_confidence	9	9	9	0.858597	2.503258	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103181014	103181329	STRG.98075.8	-	103181014	103181329	0.555556
body_of_pancreas_female_adult_51_years	chr6	145685040	145685041	145685040	-	High_confidence	4	4	6	0.572398	2.584963	chr6	145685032	145685344	LINE|L1|HAL1ME	+	chr6	145684520	145685018	STRG.66014.1	-	145684520	145685018	0.833333
body_of_pancreas_female_adult_51_years	chr7	154928480	154928504	154928503	+	High_confidence	6	6	12	1.144795	3.188722	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.916667
body_of_pancreas_female_adult_51_years	chr4	128428000	128428016	128428000	+	High_confidence	5	6	12	1.144795	3.095795	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.666667
body_of_pancreas_female_adult_51_years	chr5	66690212	66690233	66690222	+	High_confidence	14	14	37	3.529786	4.104244	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66690062	66900200	STRG.51734.2	+	66690062,66759708,66788669,66899950	66690286,66759862,66788794,66900200	0.675676
body_of_pancreas_female_adult_51_years	chr5	32403148	32403167	32403148	-	RAMPAGE_only	6	6	13	1.240195	2.855389	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.923077
body_of_pancreas_female_adult_51_years	chrX	48589947	48590033	48590006	+	RAMPAGE_only	37	40	128	12.211150	6.204390	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48597533	48600281	WDR13|ENST00000492715.1	+	48597533,48599598	48599462,48600281	0.554688
body_of_pancreas_female_adult_51_years	chr4	128098315	128098327	128098315	+	RAMPAGE_only	4	4	8	0.763197	2.750000	chr4	128098347	128098409	LINE|L1|L1MC2	+	chr4	128114135	128162901	STRG.46248.14	+	128114135,128121825,128162197	128114742,128122188,128162901	0.875000
body_of_pancreas_female_adult_51_years	chr12	120316952	120316987	120316974	+	High_confidence	16	16	57	5.437778	5.049275	chr12	120316786	120316989	SINE|MIR|MIR	-	chr12	120316971	120318075	STRG.115296.1	+	120316971	120318075	0.964912
body_of_pancreas_female_adult_51_years	chr18	58088174	58088197	58088196	+	RAMPAGE_only	4	6	11	1.049396	2.921928	chr18	58087897	58088355	LTR|ERVL-MaLR|MLT1F	-	chr18	58047225	58401540	NEDD4L|NM_001144964.1	+	58047225,58165787,58245426,58248898,58252000,58315981,58322424,58323231,58324995,58328994,58330737,58333817,58335477,58341037,58341677,58342905,58349536,58350990,58357193,58364267,58365998,58367745,58370396,58373173,58383245,58385525,58387438,58389084,58390645,58391486,58396166	58047510,58165861,58245508,58248937,58252054,58316032,58322486,58323334,58325162,58329127,58330914,58333892,58335537,58341169,58341797,58343103,58349614,58351045,58357252,58364333,58366228,58367867,58370467,58373269,58383319,58385586,58387498,58389192,58390742,58391559,58401540	0.545455
body_of_pancreas_female_adult_51_years	chr3	15738511	15738512	15738511	+	High_confidence	588	645	647	61.723549	4.718242	chr3	15738158	15739435	LTR|ERVK|MER11B	-	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.993818
body_of_pancreas_female_adult_51_years	chr20	45312663	45312702	45312663	+	RAMPAGE_only	13	13	39	3.720585	3.231370	chr20	45312711	45313024	SINE|Alu|AluJb	+	chr20	45306850	45316959	STRG.152958.4	+	45306850,45308142,45311588,45314034,45314412,45316186,45316476,45316685	45306944,45309692,45313605,45314144,45314565,45316342,45316580,45316959	0.974359
body_of_pancreas_female_adult_51_years	chr12	91179462	91179526	91179462	-	High_confidence	360	374	1595	152.162380	7.045237	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.683386
body_of_pancreas_female_adult_51_years	chr3	114759186	114759190	114759186	-	High_confidence	11	11	26	2.480390	4.243856	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114338651	114759271	ZBTB20|ENST00000471418.5	-	114338651,114350273,114380216,114389004,114500351,114693527,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114759271	0.615385
body_of_pancreas_female_adult_51_years	chr15	34588450	34588451	34588450	-	High_confidence	12	14	18	1.717193	3.683542	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.944444
body_of_pancreas_female_adult_51_years	chr2	241970925	241970964	241970963	+	High_confidence	5	5	11	1.049396	2.913977	chr2	241970680	241971299	LTR|ERV1|LTR71B	+	chr2	241970999	241978674	STRG.29005.2	+	241970999,241971679,241972112,241972451,241978562	241971493,241971775,241972169,241972556,241978674	1.000000
body_of_pancreas_female_adult_51_years	chr1	103616606	103616607	103616606	+	High_confidence	5	5	7	0.667797	2.521641	chr1	103616189	103616656	LTR|ERV1|LTR2B	-	chr1	103616810	103625777	AMY2A|ENST00000622339.4	+	103616810,103617394,103617953,103618910,103619553,103620550,103621576,103621793,103623865,103624095,103625556	103617059,103617608,103618100,103619108,103619784,103620684,103621699,103621893,103623984,103624221,103625777	1.000000
body_of_pancreas_female_adult_51_years	chr16	20330074	20330075	20330074	-	RAMPAGE_only	6	6	8	0.763197	2.521641	chr16	20329820	20330142	LINE|L2|L2a	+	chr16	20324046	20327508	GP2|ENST00000575730.1	-	20324046,20326255,20327466	20324256,20326467,20327508	0.750000
body_of_pancreas_female_adult_51_years	chr12	15764201	15764204	15764201	-	RAMPAGE_only	6	6	11	1.049396	2.921928	chr12	15763995	15764357	LTR|ERVL-MaLR|THE1B	-	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.545455
body_of_pancreas_female_adult_51_years	chr7	104926626	104926641	104926626	-	High_confidence	47	49	132	12.592749	5.858842	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104911915	104926630	LHFPL3-AS2|ENST00000453666.2	-	104911915,104915705,104917559,104920384,104926452	104912076,104915827,104917980,104920425,104926630	0.568182
body_of_pancreas_female_adult_51_years	chr22	18149851	18149864	18149863	+	High_confidence	10	10	17	1.621793	2.524397	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.941176
body_of_pancreas_female_adult_51_years	chr19	9140390	9140428	9140393	+	High_confidence	24	24	89	8.490565	5.562911	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.606742
body_of_pancreas_female_adult_51_years	chr9	121313980	121314021	121314020	+	RAMPAGE_only	19	19	69	6.582573	5.079630	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
body_of_pancreas_female_adult_51_years	chr5	38468436	38468444	38468436	-	High_confidence	5	5	12	1.144795	3.095795	chr5	38468426	38468568	SINE|MIR|MIRc	-	chr5	38466162	38468339	AC010457.1|ENST00000510137.1	-	38466162,38468238	38466398,38468339	0.750000
body_of_pancreas_female_adult_51_years	chr15	80059918	80059928	80059918	+	High_confidence	19	21	37	3.529786	4.756619	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.945946
body_of_pancreas_female_adult_51_years	chr13	22040971	22040972	22040971	+	High_confidence	14	15	21	2.003392	3.748995	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.571429
body_of_pancreas_female_adult_51_years	chr17	358994	359025	358994	-	RAMPAGE_only	7	9	36	3.434386	4.593400	chr17	358953	359053	DNA|hAT-Charlie|MER117	+	chr17	212501	353097	RPH3AL|ENST00000323434.12	-	212501,215653,219622,247110,319419,321271,327466,333758,352711	213923,215802,219736,247285,319549,321415,327579,333934,353097	0.638889
body_of_pancreas_female_adult_51_years	chr12	105233219	105233220	105233219	-	High_confidence	7	8	11	1.049396	3.095795	chr12	105233175	105233274	LINE|L2|L2c	+	chr12	105177109	105233154	APPL2|ENST00000547809.5	-	105177109,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105233090	105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105233154	0.818182
body_of_pancreas_female_adult_51_years	chr22	49657346	49657349	49657346	-	High_confidence	4	4	9	0.858597	2.750000	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49656735	49657312	STRG.157336.1	-	49656735	49657312	0.666667
body_of_pancreas_female_adult_51_years	chr14	91462201	91462243	91462201	-	High_confidence	2	2	8	0.763197	2.750000	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.625000
body_of_pancreas_female_adult_51_years	chr2	53048291	53048297	53048296	-	RAMPAGE_only	3	3	9	0.858597	2.750000	chr2	53048230	53049807	LINE|L1|L1PA4	+	chr2	53044890	53049735	STRG.17706.1	-	53044890	53049735	0.777778
body_of_pancreas_female_adult_51_years	chr16	75225644	75225762	75225666	+	High_confidence	51	56	229	21.846511	6.275666	chr16	75225506	75225759	SINE|Alu|AluYm1	-	chr16	75224816	75226338	CTRB1|ENST00000642378.1	+	75224816,75225643	75225397,75226338	0.868996
body_of_pancreas_female_adult_51_years	chr11	2376167	2376188	2376187	+	High_confidence	3	3	7	0.667797	2.521641	chr11	2376100	2376285	DNA|hAT-Charlie|MER3	-	chr11	2376176	2395900	CD81|ENST00000475945.6	+	2376176,2390411,2394094,2394971,2395415,2395868	2376357,2390526,2394192,2395046,2395520,2395900	0.857143
body_of_pancreas_female_adult_51_years	chr19	20750334	20750368	20750362	-	RAMPAGE_only	29	29	144	13.737544	5.782140	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746922	20755250	AC010329.1|ENST00000593903.1	-	20746922	20755250	0.993056
body_of_pancreas_female_adult_51_years	chr9	104906000	104906001	104906000	-	RAMPAGE_only	9	9	14	1.335595	2.896292	chr9	104905864	104906087	SINE|MIR|MIRb	+	chr9	104861437	104928139	ABCA1|ENST00000374733.1	-	104861437,104883038,104884426,104889101,104927934	104861800,104883157,104884568,104889195,104928139	1.000000
body_of_pancreas_female_adult_51_years	chr5	42175290	42175291	42175290	-	High_confidence	12	12	13	1.240195	3.084963	chr5	42175074	42175255	LTR|ERVL-MaLR|MSTC	-	chr5	42155832	42175345	LOC101926960|NR_104635.1	-	42155832,42159336,42168462,42175152	42157411,42159446,42168587,42175345	0.538462
body_of_pancreas_female_adult_51_years	chr11	58578102	58578133	58578132	-	High_confidence	15	16	55	5.246979	4.796145	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.636364
body_of_pancreas_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	23	23	23	2.194191	3.675311	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.739130
body_of_pancreas_female_adult_51_years	chr13	93455182	93455185	93455184	+	RAMPAGE_only	5	8	10	0.953996	2.725481	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.900000
body_of_pancreas_female_adult_51_years	chr11	107385652	107385655	107385654	-	RAMPAGE_only	8	11	13	1.240195	3.584963	chr11	107385593	107386104	DNA|TcMar-Tigger|MER44B	+	chr11	107348710	107353730	CWF19L2|ENST00000462890.1	-	107348710,107353523	107349053,107353730	0.846154
body_of_pancreas_female_adult_51_years	chr2	25559370	25559378	25559371	-	High_confidence	19	23	36	3.434386	4.514718	chr2	25558950	25559610	LINE|L2|L2	+	chr2	25455408	25559330	STRG.15878.1	-	25455408,25482795,25531472,25559150	25455494,25482873,25531597,25559330	0.861111
body_of_pancreas_female_adult_51_years	chrX	115647936	115647988	115647987	+	RAMPAGE_only	2	3	9	0.858597	2.750000	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.888889
body_of_pancreas_female_adult_51_years	chr7	97973336	97973338	97973336	-	High_confidence	5	10	13	1.240195	3.392747	chr7	97973175	97973663	LTR|ERV1|MER51E	-	chr7	97945543	97972975	STRG.72737.1	-	97945543,97969769,97970133,97970318	97945615,97969845,97970227,97972975	0.615385
body_of_pancreas_female_adult_51_years	chr4	130850440	130850481	130850476	+	High_confidence	33	41	79	7.536569	5.572459	chr4	130850413	130851223	LTR|ERV1|LTR38-int	+	chr4	130850484	130851328	STRG.46176.1	+	130850484	130851328	0.632911
body_of_pancreas_female_adult_51_years	chr16	20676155	20676162	20676161	-	High_confidence	10	12	19	1.812593	3.947703	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.789474
body_of_pancreas_female_adult_51_years	chr2	227164620	227164621	227164620	+	High_confidence	10	10	11	1.049396	3.121928	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.727273
body_of_pancreas_female_adult_51_years	chr2	79215317	79215353	79215331	-	High_confidence	4	4	19	1.812593	3.683542	chr2	79214031	79217306	LTR|ERV1|HERVH-int	-	chr2	79211487	79215257	STRG.19964.1	-	79211487,79214997	79211764,79215257	0.736842
body_of_pancreas_female_adult_51_years	chr21	29077484	29077501	29077486	+	High_confidence	7	10	21	2.003392	3.784184	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.666667
body_of_pancreas_female_adult_51_years	chr2	208353336	208353381	208353336	+	High_confidence	79	80	164	15.645536	5.802727	chr2	208353158	208353396	DNA|hAT-Charlie|Charlie10a	+	chr2	208352622	208358001	STRG.27018.1	+	208352622,208353897,208354570,208355189	208352782,208354159,208354645,208358001	0.512195
body_of_pancreas_female_adult_51_years	chr4	86453182	86453203	86453202	-	High_confidence	15	15	96	9.158363	4.660832	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.927083
body_of_pancreas_female_adult_51_years	chr1	160537052	160537059	160537052	+	High_confidence	19	21	62	5.914776	4.997999	chr1	160536842	160537065	LTR|ERVL|LTR33A_	+	chr1	160537072	160571458	AL138930.1|ENST00000446952.1	+	160537072,160570938	160537187,160571458	0.741935
body_of_pancreas_female_adult_51_years	chr16	75222415	75222707	75222419	+	High_confidence	51	64	457	43.597622	7.295750	chr16	75222363	75222517	SINE|MIR|MIR	-	chr16	75222609	75223607	CTRB1|ENST00000495583.1	+	75222609,75222968,75223140,75223447	75222871,75223048,75223219,75223607	0.684902
body_of_pancreas_female_adult_51_years	chr10	116597708	116597721	116597720	+	High_confidence	6	8	16	1.526394	3.202820	chr10	116597714	116597764	DNA|hAT-Tip100|MER91B	-	chr10	116598068	116600516	PNLIPRP1|ENST00000534513.1	+	116598068,116600046	116598166,116600516	0.500000
body_of_pancreas_female_adult_51_years	chr13	59343989	59344012	59343996	-	RAMPAGE_only	5	5	19	1.812593	3.366091	chr13	59343979	59344022	LTR|ERVL-MaLR|MLT1L	-	chr13	59125641	59138391	STRG.118657.1	-	59125641,59127920,59134089,59138178	59125817,59127974,59134268,59138391	0.578947
body_of_pancreas_female_adult_51_years	chr7	117475573	117475579	117475578	+	RAMPAGE_only	5	6	10	0.953996	2.721928	chr7	117475506	117475805	SINE|Alu|AluJo	-	chr7	117470968	117476111	STRG.75010.1	+	117470968,117475690	117471037,117476111	0.600000
body_of_pancreas_female_adult_51_years	chr2	79214899	79214914	79214899	+	RAMPAGE_only	4	4	10	0.953996	3.321928	chr2	79214031	79217306	LTR|ERV1|HERVH-int	-	chr2	79312709	79369585	STRG.19888.1	+	79312709,79339614,79339947,79365775,79369353	79312796,79339862,79340063,79366803,79369585	0.500000
body_of_pancreas_female_adult_51_years	chr7	142712498	142712534	142712533	-	High_confidence	33	33	85	8.108967	5.856220	chr7	142712041	142712531	LTR|ERVL-MaLR|MLT1D	-	chr7	142711098	142712380	STRG.76441.1	-	142711098	142712380	0.717647
body_of_pancreas_female_adult_51_years	chr16	20674497	20674498	20674497	+	High_confidence	129	134	149	14.214542	5.658511	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.597315
body_of_pancreas_female_adult_51_years	chr7	155243611	155243702	155243611	-	RAMPAGE_only	8	8	37	3.529786	4.537845	chr7	155240897	155243674	LTR|ERVK|HERVK9-int	-	chr7	155239492	155246339	STRG.77437.1	-	155239492,155243564,155245817	155239783,155243716,155246339	0.648649
body_of_pancreas_female_adult_51_years	chr2	240686436	240686437	240686436	+	High_confidence	13	13	18	1.717193	3.281036	chr2	240685606	240686514	LTR|ERV1|MER49	-	chr2	240686333	240690414	AC011298.1|ENST00000407635.2	+	240686333,240688415,240688601	240687821,240688512,240690414	1.000000
body_of_pancreas_female_adult_51_years	chr2	178679629	178679659	178679658	-	High_confidence	3	3	9	0.858597	2.500000	chr2	178679617	178679655	LINE|CR1|L3	-	chr2	178672455	178679445	STRG.25180.2	-	178672455,178672634,178673632,178674313,178675038,178675920,178677200,178677620,178678124,178678413,178678746,178679338	178672481,178672703,178673710,178674409,178675113,178675995,178677287,178677917,178678208,178678497,178678830,178679445	0.888889
body_of_pancreas_female_adult_51_years	chr19	7642315	7642326	7642315	+	High_confidence	2	3	8	0.763197	2.521641	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7647863	STRG.146797.5	+	7642245,7642428,7642765,7642982,7643164,7644613,7645196,7646248,7647161,7647724	7642333,7642536,7642823,7643048,7643245,7644752,7645306,7646344,7647511,7647863	0.750000
body_of_pancreas_female_adult_51_years	chr1	21987305	21987316	21987305	+	High_confidence	7	7	12	1.144795	2.845351	chr1	21987188	21987470	SINE|Alu|AluSg7	+	chr1	21987480	21987777	RN7SL386P|ENST00000485776.3	+	21987480	21987777	0.500000
body_of_pancreas_female_adult_51_years	chr12	4012946	4012963	4012947	+	High_confidence	1029	1195	1785	170.288306	6.424349	chr12	4012703	4012997	SINE|Alu|AluJb	+	chr12	4012838	4019237	STRG.108075.1	+	4012838,4013691,4018981	4013114,4013786,4019237	0.903641
body_of_pancreas_female_adult_51_years	chr11	47172314	47172317	47172314	-	High_confidence	3	4	8	0.763197	2.807355	chr11	47172030	47172274	SINE|MIR|MIRb	-	chr11	47166267	47171557	ARFGAP2|ENST00000527776.5	-	47166267,47166505,47166759,47167908,47168122,47171452	47166386,47166599,47166886,47168043,47168251,47171557	0.625000
body_of_pancreas_female_adult_51_years	chr9	98943575	98943578	98943575	+	High_confidence	10	13	29	2.766589	4.236369	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.931034
body_of_pancreas_female_adult_51_years	chr12	4013179	4013180	4013179	+	High_confidence	5	5	7	0.667797	2.521641	chr12	4013126	4013391	LINE|L2|L2c	-	chr12	4012838	4019237	STRG.108075.1	+	4012838,4013691,4018981	4013114,4013786,4019237	0.571429
body_of_pancreas_female_adult_51_years	chr20	47397247	47397315	47397263	-	High_confidence	15	16	85	8.108967	5.175346	chr20	47397231	47397385	LTR|ERVL-MaLR|MLT1J	-	chr20	47384369	47397296	STRG.153089.1	-	47384369,47397148	47385019,47397296	0.705882
body_of_pancreas_female_adult_51_years	chr11	106177054	106177094	106177054	+	High_confidence	31	44	140	13.355946	6.251251	chr11	106176827	106177612	LTR|ERV1|LTR1A2	+	chr11	106177002	106180006	STRG.105631.1	+	106177002	106180006	0.514286
body_of_pancreas_female_adult_51_years	chr3	148854675	148855085	148854925	+	High_confidence	62	63	869	82.902262	7.186231	chr3	148854677	148855107	LINE|L2|L2c	-	chr3	148854340	148860187	CPB1|ENST00000473621.5	+	148854340,148859814	148857541,148860187	1.000000
body_of_pancreas_female_adult_51_years	chr6	77369106	77369167	77369166	-	High_confidence	20	33	86	8.204367	5.336165	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77350515	77368988	STRG.62619.1	-	77350515,77368885	77350734,77368988	0.651163
body_of_pancreas_female_adult_51_years	chr16	63618045	63618046	63618045	-	High_confidence	53	70	71	6.773372	5.604213	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.521127
body_of_pancreas_female_adult_51_years	chr7	99410146	99410162	99410146	+	High_confidence	5	5	9	0.858597	2.750000	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.777778
body_of_pancreas_female_adult_51_years	chr22	49925449	49925479	49925478	+	RAMPAGE_only	5	5	20	1.907992	3.446439	chr22	49925493	49925572	LINE|CR1|L3b	+	chr22	49923209	49927528	CRELD2|ENST00000487969.1	+	49923209,49927254	49925557,49927528	1.000000
body_of_pancreas_female_adult_51_years	chr8	19955888	19955919	19955904	+	High_confidence	2	2	10	0.953996	2.725481	chr8	19955939	19955979	DNA|TcMar-Tigger|Tigger19b	+	chr8	19956004	19967196	LPL|ENST00000650478.1	+	19956004,19960900,19962114,19965309	19956083,19961083,19962219,19967196	0.800000
body_of_pancreas_female_adult_51_years	chr2	71423274	71423309	71423285	+	RAMPAGE_only	5	5	24	2.289591	3.886842	chr2	71423244	71423287	DNA|hAT-Ac|OldhAT1	+	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	1.000000
body_of_pancreas_female_adult_51_years	chr7	101308269	101308300	101308299	+	High_confidence	16	16	48	4.579181	5.022055	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.979167
body_of_pancreas_female_adult_51_years	chr19	18279007	18279014	18279007	-	RAMPAGE_only	3	3	7	0.667797	2.807355	chr19	18278973	18279105	SINE|MIR|MIRc	+	chr19	18278243	18281606	STRG.147709.2	-	18278243,18281018	18280925,18281606	0.857143
body_of_pancreas_female_adult_51_years	chr3	135965670	135965749	135965733	+	High_confidence	10	11	88	8.395166	5.541318	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965732	136027175	STRG.36923.1	+	135965732,136001058,136026831	135965849,136003493,136027175	0.965909
body_of_pancreas_female_adult_51_years	chr13	110314105	110314146	110314105	-	High_confidence	4	4	17	1.621793	3.219528	chr13	110314011	110314270	LINE|L1|L1MD3	+	chr13	110313190	110313538	STRG.120448.1	-	110313190	110313538	0.823529
body_of_pancreas_female_adult_51_years	chr3	28347646	28347654	28347653	-	High_confidence	5	5	11	1.049396	2.646439	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.727273
body_of_pancreas_female_adult_51_years	chr1	174874395	174874441	174874418	+	High_confidence	7	7	27	2.575790	4.293661	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.740741
body_of_pancreas_female_adult_51_years	chr10	116655161	116655182	116655181	+	RAMPAGE_only	6	6	13	1.240195	3.251629	chr10	116653174	116655283	LINE|L1|L1PA16	-	chr10	116653087	116659709	STRG.98967.4	+	116653087	116659709	0.923077
body_of_pancreas_female_adult_51_years	chr2	213923806	213923828	213923827	+	RAMPAGE_only	3	3	11	1.049396	3.095795	chr2	213921220	213924593	LINE|L1|L1PA14	-	chr2	213284454	214241376	SPAG16|ENST00000452556.5	+	213284454,213296063,213297261,213340162,213350527,213364075,213375009,213489962,213862484,213929959,214013950,214108195,214149139,214238135	213284619,213296128,213297357,213340270,213350645,213364145,213375119,213490090,213862628,213930145,214014077,214108261,214149266,214241376	0.545455
body_of_pancreas_female_adult_51_years	chr7	80524846	80524865	80524846	+	RAMPAGE_only	14	15	22	2.098791	3.384184	chr7	80524761	80524908	LTR|ERV1|LTR38B	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.500000
body_of_pancreas_female_adult_51_years	chr18	7946878	7946879	7946878	+	High_confidence	8	8	12	1.144795	3.418296	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.833333
body_of_pancreas_female_adult_51_years	chr7	155243787	155243795	155243794	-	RAMPAGE_only	9	9	19	1.812593	3.747413	chr7	155243674	155244187	LTR|ERVK|MER9a1	-	chr7	155239492	155246339	STRG.77437.1	-	155239492,155243564,155245817	155239783,155243716,155246339	0.684211
body_of_pancreas_female_adult_51_years	chr1	21987269	21987271	21987270	+	High_confidence	25	34	44	4.197583	3.430406	chr1	21987188	21987470	SINE|Alu|AluSg7	+	chr1	21987480	21987777	RN7SL386P|ENST00000485776.3	+	21987480	21987777	0.886364
body_of_pancreas_female_adult_51_years	chr5	180830985	180831041	180831040	+	High_confidence	2	2	12	1.144795	3.418296	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831038	180834871	LINC00847|ENST00000509921.1	+	180831038,180831735,180834311	180831229,180831806,180834871	1.000000
body_of_pancreas_female_adult_51_years	chr8	102930217	102930226	102930219	+	High_confidence	2	3	6	0.572398	2.584963	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.833333
body_of_pancreas_female_adult_51_years	chr17	60887052	60887071	60887070	+	High_confidence	8	8	23	2.194191	3.725651	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.608696
body_of_pancreas_female_adult_51_years	chr5	171400153	171400202	171400153	+	High_confidence	2	2	12	1.144795	3.251629	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171400785	171405732	NPM1|ENST00000519955.1	+	171400785,171405301	171400925,171405732	0.583333
body_of_pancreas_female_adult_51_years	chr17	49836377	49836387	49836377	+	High_confidence	5	5	11	1.049396	3.095795	chr17	49836221	49836537	LINE|L2|L2a	-	chr17	49836282	49836553	STRG.140714.1	+	49836282	49836553	0.818182
body_of_pancreas_female_adult_51_years	chr3	114617614	114617646	114617633	-	High_confidence	2	3	9	0.858597	3.000000	chr3	114617609	114618177	LINE|L2|L2a	+	chr3	114616353	114617957	STRG.35708.1	-	114616353	114617957	0.888889
body_of_pancreas_female_adult_51_years	chr19	51027648	51027668	51027648	-	High_confidence	5	5	18	1.717193	3.807764	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022230	51027629	KLK11|NM_144947.1	-	51022230,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027629	0.611111
body_of_pancreas_female_adult_51_years	chr7	80594489	80594498	80594489	+	RAMPAGE_only	3	3	10	0.953996	3.121928	chr7	80594254	80594543	SINE|Alu|AluJo	-	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.800000
body_of_pancreas_female_adult_51_years	chr8	34174878	34174925	34174878	+	High_confidence	6	6	42	4.006784	4.719349	chr8	34174849	34181329	LINE|L1|L1PB1	+	chr8	34174885	34184895	AC087855.2|ENST00000518217.1	+	34174885,34184486	34175013,34184895	0.666667
body_of_pancreas_female_adult_51_years	chr1	103576952	103577064	103576966	+	High_confidence	69	76	236	22.514308	5.581227	chr1	103576953	103577226	SINE|Alu|AluJo	+	chr1	103577386	103579534	AMY2B|ENST00000481821.1	+	103577386,103579310	103577845,103579534	0.754237
body_of_pancreas_female_adult_51_years	chr16	2759908	2760018	2759971	+	High_confidence	7	7	66	6.296374	4.335590	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.939394
body_of_pancreas_female_adult_51_years	chr11	32953974	32954010	32953974	+	RAMPAGE_only	2	2	10	0.953996	3.169925	chr11	32953932	32953995	LINE|CR1|L3	-	chr11	32934583	32975630	QSER1|ENST00000524678.1	+	32934583,32953856,32955295,32955987,32957868,32966299,32969045,32973396,32975247	32935435,32954179,32955412,32956121,32958086,32966437,32969143,32973549,32975630	0.700000
body_of_pancreas_female_adult_51_years	chr11	64242523	64242547	64242546	+	High_confidence	20	20	32	3.052788	4.187500	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
body_of_pancreas_female_adult_51_years	chr22	23700803	23700804	23700803	-	RAMPAGE_only	10	10	11	1.049396	2.921928	chr22	23700074	23701270	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.909091
body_of_pancreas_female_adult_51_years	chrX	54998771	54998805	54998788	-	High_confidence	6	8	23	2.194191	3.882045	chrX	54998783	54998927	LINE|L1|L1ME4c	+	chrX	54949130	54998590	STRG.159267.1	-	54949130,54951904,54956152,54958305,54958850,54959826,54963256,54998405	54949221,54952112,54956274,54958362,54958925,54959893,54963382,54998590	0.739130
body_of_pancreas_female_adult_51_years	chr7	99659109	99659358	99659350	-	RAMPAGE_only	17	17	111	10.589357	5.650457	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99658832	99663582	CYP3A5|ENST00000473347.1	-	99658832,99662815	99660659,99663582	0.558559
body_of_pancreas_female_adult_51_years	chrX	39774153	39774177	39774176	+	High_confidence	32	34	96	9.158363	5.595445	chrX	39774140	39775059	DNA|hAT-Tip100|MER45B	+	chrX	39774177	39774699	STRG.158540.1	+	39774177	39774699	0.791667
body_of_pancreas_female_adult_51_years	chr11	287314	287315	287314	+	High_confidence	23	24	34	3.243587	4.513795	chr11	287048	287379	LINE|L2|L2a	-	chr11	287304	288298	AC136475.3|ENST00000533924.1	+	287304,288019	287334,288298	0.558824
body_of_pancreas_female_adult_51_years	chr11	123797374	123797503	123797374	+	High_confidence	24	30	151	14.405341	5.715827	chr11	123796966	123797634	LTR|ERV1|LTR76	-	chr11	123797430	123817413	STRG.106937.2	+	123797430,123816990	123797992,123817413	0.953642
body_of_pancreas_female_adult_51_years	chr12	122064346	122064376	122064375	+	High_confidence	203	208	355	33.866862	6.484132	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122064356	122068558	STRG.115447.7	+	122064356,122068027	122064682,122068558	0.583099
body_of_pancreas_female_adult_51_years	chr16	75226218	75227197	75226982	+	High_confidence	181	193	4344	414.415912	7.256355	chr16	75226955	75227086	SINE|MIR|MIRb	-	chr16	75226985	75228195	AC009078.2|ENST00000467381.1	+	75226985,75227989	75227306,75228195	0.544199
body_of_pancreas_female_adult_51_years	chr5	150507696	150507697	150507696	+	High_confidence	6	6	6	0.572398	2.584963	chr5	150507670	150507785	SINE|MIR|MIR3	-	chr5	150507639	150521102	NDST1|ENST00000518346.1	+	150507639,150508146,150518797,150520867	150507698,150508226,150518919,150521102	0.666667
body_of_pancreas_female_adult_51_years	chr6	89656026	89656058	89656026	-	RAMPAGE_only	2	2	8	0.763197	2.500000	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642498	89819723	MDN1|ENST00000369393.7	-	89642498,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89706058,89707360,89708495,89710680,89712035,89712574,89713147,89714542,89715652,89716649,89718365,89718766,89719135,89722954,89723511,89725198,89727832,89728930,89730725,89732556,89738325,89740233,89743149,89743575,89745272,89745491,89747328,89749222,89749542,89750353,89751430,89753511,89754082,89756276,89758254,89758815,89761644,89762318,89771560,89772572,89774620,89776599,89780211,89781398,89785011,89787853,89789779,89790158,89793761,89794099,89794576,89803327,89819505	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89706192,89707476,89708628,89710794,89712256,89712786,89713296,89714751,89715769,89716809,89718627,89719030,89719225,89723143,89723619,89725396,89727955,89729139,89730923,89732775,89738455,89740378,89743280,89743714,89745411,89745626,89747470,89749369,89749751,89750532,89751582,89753622,89754230,89756390,89758351,89758960,89761748,89762530,89771621,89772721,89774733,89776695,89780293,89781592,89785126,89787957,89789911,89790401,89793954,89794207,89794801,89803554,89819723	1.000000
body_of_pancreas_female_adult_51_years	chr12	53464815	53464842	53464815	+	RAMPAGE_only	2	2	10	0.953996	2.521928	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	1.000000
body_of_pancreas_female_adult_51_years	chr7	107580245	107580267	107580245	+	High_confidence	113	113	485	46.268811	6.756734	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.870103
body_of_pancreas_female_adult_51_years	chr9	20658334	20658347	20658346	+	High_confidence	10	10	40	3.815984	4.249341	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658335	20694520	STRG.85580.1	+	20658335,20694519	20658826,20694520	0.575000
body_of_pancreas_female_adult_51_years	chr8	116648828	116648905	116648847	-	RAMPAGE_only	4	4	27	2.575790	4.403856	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.925926
body_of_pancreas_female_adult_51_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	24	24	24	2.289591	3.569774	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
body_of_pancreas_female_adult_51_years	chr14	100829453	100829524	100829513	+	High_confidence	13	13	52	4.960780	4.940636	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.884615
body_of_pancreas_female_adult_51_years	chr17	47067498	47067534	47067498	-	High_confidence	99	110	399	38.064445	5.756066	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.954887
body_of_pancreas_female_adult_51_years	chr3	122183657	122183732	122183718	+	High_confidence	41	43	255	24.326901	6.440161	chr3	122183547	122183832	LINE|L2|L2c	-	chr3	122183682	122286497	CASR|NM_000388.3	+	122183682,122253947,122257080,122261527,122275811,122282112,122283686	122183812,122254374,122257387,122262412,122276042,122282236,122286497	0.541176
body_of_pancreas_female_adult_51_years	chr10	110884168	110884311	110884219	+	RAMPAGE_only	8	10	105	10.016959	5.107190	chr10	110884269	110884365	DNA|TcMar-Tigger|Tigger7	+	chr10	110871954	110894179	STRG.98333.3	+	110871954,110875965,110881232,110883002,110887664,110889532,110890555,110894090	110872018,110876070,110881535,110885366,110887886,110889630,110890670,110894179	1.000000
body_of_pancreas_female_adult_51_years	chr2	48568957	48568988	48568986	+	High_confidence	12	21	46	4.388382	5.028890	chr2	48569019	48569241	SINE|MIR|MIRb	+	chr2	48569019	48679609	STON1-GTF2A1L|NM_172311.2	+	48569019,48580586,48591652,48620850,48621166,48642401,48645032,48646452,48669721,48671590,48679334	48569086,48582563,48591855,48620952,48621290,48642457,48645117,48647042,48669982,48671680,48679609	0.739130
body_of_pancreas_female_adult_51_years	chr2	241235112	241235149	241235112	-	RAMPAGE_only	3	3	10	0.953996	2.641604	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241230774	241236664	HDLBP|ENST00000470482.5	-	241230774,241233819,241235120,241235489,241236614	241230944,241233963,241235275,241235594,241236664	0.500000
body_of_pancreas_female_adult_51_years	chr14	81170392	81170420	81170419	-	High_confidence	16	18	107	10.207758	4.977306	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.971963
body_of_pancreas_female_adult_51_years	chr17	82081606	82081626	82081606	-	High_confidence	8	8	19	1.812593	4.037401	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.526316
body_of_pancreas_female_adult_51_years	chr11	117159626	117159627	117159626	+	High_confidence	4	4	7	0.667797	2.521641	chr11	117159461	117159762	SINE|Alu|AluJb	+	chr11	117159386	117161263	PAFAH1B2|ENST00000533677.1	+	117159386,117161144	117160023,117161263	0.857143
body_of_pancreas_female_adult_51_years	chr7	10941135	10941145	10941141	+	RAMPAGE_only	3	3	12	1.144795	2.855389	chr7	10941109	10941301	LINE|L2|L2b	-	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.916667
body_of_pancreas_female_adult_51_years	chr5	9409594	9409615	9409614	-	RAMPAGE_only	27	27	50	4.769981	4.863465	chr5	9409587	9409722	SINE|MIR|MIR1_Amn	+	chr5	9202123	9380201	SEMA5A|ENST00000513968.4	-	9202123,9224673,9226868,9237827,9318371,9337712,9379822,9380106	9202240,9224887,9226967,9237890,9318417,9337812,9380023,9380201	0.540000
body_of_pancreas_female_adult_51_years	chr1	1655473	1655481	1655480	-	RAMPAGE_only	3	3	7	0.667797	2.807355	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.571429
body_of_pancreas_female_adult_51_years	chr11	77175259	77175303	77175302	+	High_confidence	4	4	15	1.430994	3.240224	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
body_of_pancreas_female_adult_51_years	chr6	113873318	113873347	113873346	-	High_confidence	5	5	19	1.812593	3.392147	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.894737
body_of_pancreas_female_adult_51_years	chr1	236236139	236236147	236236146	-	RAMPAGE_only	11	11	18	1.717193	2.996624	chr1	236235932	236236226	SINE|Alu|AluSx1	-	chr1	236220172	236281985	STRG.13639.2	-	236220172,236221923,236225069,236226268,236226646,236232827,236235788,236243421,236249884,236252049,236253421,236269874,236281681	236220965,236222010,236225139,236226515,236230250,236232839,236236398,236243495,236249967,236252091,236253505,236269994,236281985	0.944444
body_of_pancreas_female_adult_51_years	chr5	147839235	147839238	147839237	-	High_confidence	15	18	24	2.289591	3.788755	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.791667
body_of_pancreas_female_adult_51_years	chr10	116554491	116554492	116554491	+	RAMPAGE_only	22	22	27	2.575790	4.162295	chr10	116554056	116554491	DNA|hAT-Charlie|Charlie13b	-	chr10	116545930	116567855	PNLIP|ENST00000369221.2	+	116545930,116546092,116547293,116548359,116551097,116553726,116555177,116555387,116555999,116559153,116560415,116561471,116567734	116545958,116546138,116547448,116548482,116551232,116553838,116555297,116555507,116556118,116559283,116560524,116561636,116567855	0.666667
body_of_pancreas_female_adult_51_years	chr15	57451556	57451587	57451556	+	RAMPAGE_only	3	3	15	1.430994	2.978095	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.933333
body_of_pancreas_female_adult_51_years	chr7	53811930	53811935	53811930	-	High_confidence	4	4	10	0.953996	2.846439	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.900000
body_of_pancreas_female_adult_51_years	chr12	3367957	3367984	3367983	+	High_confidence	5	5	15	1.430994	2.815922	chr12	3368033	3368104	LTR|ERVL|LTR16	+	chr12	3367832	3371346	LINC02417|ENST00000542449.1	+	3367832,3368264,3371284	3368124,3368425,3371346	0.933333
body_of_pancreas_female_adult_51_years	chr5	115956591	115956676	115956591	+	High_confidence	17	17	121	11.543353	5.831329	chr5	115956262	115957250	LINE|L2|L2b	-	chr5	115956584	115958590	STRG.54721.1	+	115956584,115958428	115956920,115958590	0.760331
body_of_pancreas_female_adult_51_years	chr11	9266228	9266265	9266264	-	High_confidence	3	3	8	0.763197	3.000000	chr11	9266225	9266423	SINE|MIR|MIR	+	chr11	9138824	9265390	DENND5A|ENST00000328194.7	-	9138824,9141939,9142721,9143402,9144096,9144994,9145669,9147029,9150080,9150679,9152357,9160712,9165835,9169855,9170626,9178131,9178857,9180766,9193493,9203659,9206672,9207560,9264960	9139854,9142108,9142845,9143485,9144278,9145113,9145815,9147151,9150209,9150764,9152442,9160865,9165967,9169949,9170777,9178366,9179073,9181084,9193681,9204317,9206782,9207632,9265390	0.750000
body_of_pancreas_female_adult_51_years	chr10	110884978	110885005	110885004	+	High_confidence	10	11	22	2.098791	3.823068	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110884770	110894179	PDCD4|ENST00000481353.5	+	110884770,110887664,110889532,110890555,110894090	110885366,110887886,110889630,110890670,110894179	1.000000
body_of_pancreas_female_adult_51_years	chr8	102930126	102930183	102930162	+	High_confidence	34	34	173	16.504133	6.173068	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930155	102930469	STRG.82549.1	+	102930155	102930469	0.734104
body_of_pancreas_female_adult_51_years	chr15	32613717	32613763	32613752	+	High_confidence	18	18	55	5.246979	4.058043	chr15	32613534	32613838	SINE|Alu|AluSg7	+	chr15	32613732	32615111	AC123768.2|ENST00000500941.2	+	32613732,32614108,32614739	32613998,32614202,32615111	0.781818
body_of_pancreas_female_adult_51_years	chr7	104926544	104926545	104926544	-	RAMPAGE_only	10	10	14	1.335595	3.521641	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104916171	104918281	STRG.73291.1	-	104916171	104918281	0.500000
body_of_pancreas_female_adult_51_years	chr6	118651542	118651593	118651592	-	High_confidence	20	20	98	9.349162	5.650388	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118632550	118651585	STRG.64671.1	-	118632550,118651196	118632611,118651585	0.653061
body_of_pancreas_female_adult_51_years	chr14	61885139	61885171	61885170	+	RAMPAGE_only	6	6	14	1.335595	3.238901	chr14	61885174	61885370	SINE|MIR|MIR	+	chr14	61812705	61996460	SYT16|ENST00000636344.1	+	61812705,61970131,61995875	61812810,61970311,61996460	0.642857
body_of_pancreas_female_adult_51_years	chrX	93434924	93434956	93434955	+	High_confidence	5	6	26	2.480390	4.026987	chrX	93430164	93437998	LTR|ERV1|HERVE-int	+	chrX	93435129	93435827	STRG.160801.1	+	93435129	93435827	0.769231
body_of_pancreas_female_adult_51_years	chr11	106176918	106176926	106176918	+	High_confidence	5	5	13	1.240195	3.251629	chr11	106176827	106177612	LTR|ERV1|LTR1A2	+	chr11	106177002	106180006	STRG.105631.1	+	106177002	106180006	0.769231
body_of_pancreas_female_adult_51_years	chr14	95516119	95516121	95516119	+	High_confidence	3	6	8	0.763197	2.500000	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	1.000000
body_of_pancreas_female_adult_51_years	chr8	102929989	102930019	102929989	+	High_confidence	10	10	36	3.434386	4.627987	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930155	102930469	STRG.82549.1	+	102930155	102930469	0.583333
body_of_pancreas_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	54	54	56	5.342378	4.226270	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.892857
body_of_pancreas_female_adult_51_years	chr7	101217578	101217588	101217580	-	High_confidence	8	14	23	2.194191	4.175736	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101212543	101217562	STRG.73035.2	-	101212543,101212841,101213106,101215088,101215907,101216196,101216409,101216694,101217165	101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217562	1.000000
body_of_pancreas_female_adult_51_years	chr20	3795750	3795789	3795788	+	High_confidence	12	12	74	7.059571	5.214200	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	1.000000
body_of_pancreas_female_adult_51_years	chr14	95481761	95481766	95481761	-	RAMPAGE_only	5	7	10	0.953996	2.721928	chr14	95481614	95481737	LTR|ERVL|LTR33A_	-	chr14	95443660	95475836	SYNE3|ENST00000553340.1	-	95443660,95445908,95449930,95452246,95455376,95457176,95465930,95467794,95475677	95444628,95446091,95450105,95452383,95455724,95457338,95466240,95467967,95475836	1.000000
body_of_pancreas_female_adult_51_years	chr10	45000453	45000504	45000453	+	High_confidence	8	8	29	2.766589	3.948859	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.965517
body_of_pancreas_female_adult_51_years	chr17	59619894	59619923	59619894	+	High_confidence	417	453	1296	123.637896	5.575159	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.957562
body_of_pancreas_female_adult_51_years	chr10	116595465	116596259	116596150	+	RAMPAGE_only	99	105	1582	150.922185	8.262125	chr10	116596064	116596174	LINE|L2|L2	-	chr10	116590968	116597945	STRG.98966.8	+	116590968,116591129,116591770,116592415,116594729,116597827	116590995,116591178,116591925,116592541,116596322,116597945	0.742099
body_of_pancreas_female_adult_51_years	chr9	33788013	33788022	33788021	-	High_confidence	131	133	207	19.747720	6.784121	chr9	33787788	33788259	LTR|ERVL|MER70B	-	chr9	33787394	33787999	STRG.86007.1	-	33787394	33787999	0.531401
body_of_pancreas_female_adult_51_years	chr12	132437315	132437337	132437336	-	High_confidence	13	13	37	3.529786	4.171861	chr12	132437064	132437307	LTR|ERVL-MaLR|MLT1A1	-	chr12	132435629	132437355	STRG.116013.1	-	132435629,132435954,132437094	132435805,132436211,132437355	0.837838
body_of_pancreas_female_adult_51_years	chr15	45397244	45397346	45397310	-	High_confidence	25	26	205	19.556920	5.579256	chr15	45397083	45398013	LTR|ERVL|MER21C	+	chr15	45380499	45397346	GATM|ENST00000527933.2	-	45380499,45396166,45396921	45380559,45396253,45397346	0.975610
body_of_pancreas_female_adult_51_years	chr18	46087118	46087119	46087118	-	High_confidence	6	6	8	0.763197	2.500000	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.750000
body_of_pancreas_female_adult_51_years	chr5	117455092	117455102	117455101	+	High_confidence	3	3	10	0.953996	2.921928	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.700000
body_of_pancreas_female_adult_51_years	chr1	236236088	236236100	236236088	-	RAMPAGE_only	6	6	15	1.430994	2.950212	chr1	236235932	236236226	SINE|Alu|AluSx1	-	chr1	236220172	236281985	STRG.13639.2	-	236220172,236221923,236225069,236226268,236226646,236232827,236235788,236243421,236249884,236252049,236253421,236269874,236281681	236220965,236222010,236225139,236226515,236230250,236232839,236236398,236243495,236249967,236252091,236253505,236269994,236281985	0.933333
body_of_pancreas_female_adult_51_years	chr9	129489122	129489140	129489125	+	High_confidence	8	8	16	1.526394	3.500000	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.875000
body_of_pancreas_female_adult_51_years	chr11	71745857	71745936	71745935	+	High_confidence	2	2	12	1.144795	3.459432	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.833333
body_of_pancreas_female_adult_51_years	chr7	150323668	150323751	150323711	-	High_confidence	10	10	61	5.819376	4.862520	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	0.918033
body_of_pancreas_female_adult_51_years	chr1	225825456	225825497	225825486	+	High_confidence	12	12	32	3.052788	4.155639	chr1	225825407	225825487	LINE|CR1|L3b	+	chr1	225825353	225845563	EPHX1|ENST00000366837.5	+	225825353,225828724,225831778,225838653,225839216,225839828,225842365,225844497,225845145	225825544,225828912,225831959,225838881,225839346,225840037,225842474,225844623,225845563	0.968750
body_of_pancreas_female_adult_51_years	chr12	72432475	72432484	72432479	+	High_confidence	101	166	461	43.979221	6.823445	chr12	72432166	72432618	LTR|ERVK|LTR22A	-	chr12	72432227	72621331	STRG.112810.1	+	72432227,72469757,72473066,72499497,72542290,72562164,72562852,72568567,72575254,72575486,72618890,72621107	72432566,72469912,72473180,72499635,72542356,72562230,72563040,72568656,72575388,72575542,72619038,72621331	0.652928
body_of_pancreas_female_adult_51_years	chr2	240686336	240686365	240686336	+	High_confidence	205	213	690	65.825732	4.429688	chr2	240685606	240686514	LTR|ERV1|MER49	-	chr2	240686333	240690414	AC011298.1|ENST00000407635.2	+	240686333,240688415,240688601	240687821,240688512,240690414	0.997101
body_of_pancreas_female_adult_51_years	chr21	36980868	36980983	36980982	-	High_confidence	7	7	42	4.006784	4.552197	chr21	36980978	36981177	LINE|L2|L2b	+	chr21	36750887	36980964	HLCS|ENST00000612277.4	-	36750887,36756541,36759726,36765011,36767217,36896859,36930250,36936448,36938831,36946008,36962035,36980783	36754417,36756755,36759841,36765172,36767285,36897131,36930433,36937392,36938994,36946154,36962170,36980964	0.904762
body_of_pancreas_female_adult_51_years	chr17	28233986	28234046	28234030	-	RAMPAGE_only	40	42	246	23.468304	6.684161	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.995935
body_of_pancreas_female_adult_51_years	chr11	123061152	123061257	123061256	-	High_confidence	86	86	201	19.175322	5.310965	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.960199
body_of_pancreas_female_adult_51_years	chrX	73837450	73837474	73837450	-	RAMPAGE_only	7	7	17	1.621793	3.202820	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.941176
body_of_pancreas_female_adult_51_years	chr1	116390191	116390242	116390239	+	RAMPAGE_only	6	6	26	2.480390	3.917189	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.769231
body_of_pancreas_female_adult_51_years	chr21	42955761	42955834	42955786	-	High_confidence	21	23	64	6.105575	4.966579	chr21	42955408	42955905	LTR|ERV1|HERVE-int	-	chr21	42955461	42955764	STRG.155071.1	-	42955461	42955764	0.625000
body_of_pancreas_female_adult_51_years	chr1	22010374	22010435	22010413	+	High_confidence	15	16	66	6.296374	4.035245	chr1	22010352	22010637	SINE|Alu|AluSg7	+	chr1	22010649	22010946	RN7SL186P|ENST00000466485.3	+	22010649	22010946	0.742424
body_of_pancreas_female_adult_51_years	chr11	64226142	64226180	64226158	-	High_confidence	31	32	168	16.027135	6.652670	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.976190
body_of_pancreas_female_adult_51_years	chr8	17895504	17895521	17895504	-	High_confidence	354	357	1363	130.029670	7.655163	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.670580
body_of_pancreas_female_adult_51_years	chr12	4020873	4020922	4020904	+	High_confidence	3	3	22	2.098791	3.821928	chr12	4018993	4021963	LTR|ERV1|HERVH-int	+	chr12	4020976	4026658	AC007207.2|ENST00000543206.1	+	4020976,4026221	4021081,4026658	0.545455
body_of_pancreas_female_adult_51_years	chr12	643625	643636	643635	-	High_confidence	6	6	19	1.812593	3.641604	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.736842
body_of_pancreas_female_adult_51_years	chr1	19344370	19344389	19344388	-	RAMPAGE_only	4	4	10	0.953996	2.947703	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.900000
body_of_pancreas_female_adult_51_years	chr10	116600691	116600833	116600691	+	RAMPAGE_only	14	18	83	7.918168	5.456646	chr10	116600619	116600804	DNA|hAT-Blackjack|MER63A	+	chr10	116594729	116609175	PNLIPRP1|ENST00000482833.1	+	116594729,116596213,116597827,116598046,116601071,116604029,116605385,116609052	116594864,116596322,116597947,116598166,116601201,116604138,116605553,116609175	0.650602
body_of_pancreas_female_adult_51_years	chr7	90718123	90718124	90718123	+	RAMPAGE_only	7	7	9	0.858597	2.947703	chr7	90718060	90718155	DNA|hAT-Charlie|MER20B	+	chr7	90709861	90955793	CDK14|ENST00000431029.5	+	90709861,90726566,90790572,90863174,90899290,90917600,90955696	90709957,90726812,90790652,90863269,90899353,90917724,90955793	0.888889
body_of_pancreas_female_adult_51_years	chr9	73080369	73080370	73080369	-	High_confidence	11	11	11	1.049396	2.732159	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.818182
body_of_pancreas_female_adult_51_years	chr3	139344535	139344548	139344547	+	High_confidence	5	5	13	1.240195	3.392747	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.769231
body_of_pancreas_female_adult_51_years	chr11	123060129	123060229	123060174	-	High_confidence	11	12	83	7.918168	4.916813	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.650602
body_of_pancreas_female_adult_51_years	chr4	141332616	141332617	141332616	-	High_confidence	1672	1683	1728	164.850528	5.244064	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.950810
body_of_pancreas_female_adult_51_years	chr8	144853526	144853556	144853555	-	High_confidence	2	2	7	0.667797	2.521641	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	1.000000
body_of_pancreas_female_adult_51_years	chr6	76774949	76775007	76774949	+	High_confidence	44	44	207	19.747720	6.246172	chr6	76774716	76775166	LTR|ERVL|MER70A	+	chr6	76774982	76775860	AL590426.2|ENST00000607287.1	+	76774982,76775167	76775075,76775860	0.913043
body_of_pancreas_female_adult_51_years	chr11	65437479	65437645	65437584	+	RAMPAGE_only	14	14	108	10.303158	4.947369	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65425550	65445540	STRG.103205.5	+	65425550,65430209	65429951,65445540	0.990741
body_of_pancreas_female_adult_51_years	chr19	49867876	49867909	49867908	-	High_confidence	3	3	6	0.572398	2.584963	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49863965	49867909	PNKP|ENST00000599543.3	-	49863965,49864178,49864323,49865126,49866398,49867053,49867678	49864071,49864236,49864403,49865426,49866445,49867217,49867909	0.833333
body_of_pancreas_female_adult_51_years	chr11	17282821	17282825	17282824	+	RAMPAGE_only	4	4	8	0.763197	2.807355	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.500000
body_of_pancreas_female_adult_51_years	chr9	127642418	127642438	127642428	+	High_confidence	25	27	93	8.872164	5.632915	chr9	127642433	127642559	LINE|CR1|L3	+	chr9	127642342	127663258	STXBP1|ENST00000626333.1	+	127642342,127651602,127653714,127658374,127660029,127661101,127663204	127642563,127651652,127653796,127658451,127660108,127661205,127663258	0.569892
body_of_pancreas_female_adult_51_years	chr9	129488817	129488891	129488856	+	High_confidence	13	13	48	4.579181	4.644975	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.979167
body_of_pancreas_female_adult_51_years	chr13	59292581	59292596	59292581	-	RAMPAGE_only	4	4	13	1.240195	2.931209	chr13	59291392	59297848	LINE|L1|L1PA7	+	chr13	59125641	59138391	STRG.118657.1	-	59125641,59127920,59134089,59138178	59125817,59127974,59134268,59138391	1.000000
body_of_pancreas_female_adult_51_years	chr4	152412488	152412529	152412488	-	High_confidence	3	3	8	0.763197	2.750000	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
body_of_pancreas_female_adult_51_years	chr11	1456382	1456437	1456436	+	RAMPAGE_only	4	4	16	1.526394	2.780639	chr11	1456423	1456514	DNA|hAT-Ac|OldhAT1	-	chr11	1454426	1459447	BRSK2|ENST00000531932.1	+	1454426,1456347,1456597,1459191	1454608,1456528,1456687,1459447	0.625000
body_of_pancreas_female_adult_51_years	chr17	42662962	42662965	42662964	+	High_confidence	5	7	9	0.858597	2.750000	chr17	42662805	42662965	LTR|ERVL|MER21A	+	chr17	42662785	42666948	STRG.139900.4	+	42662785,42665475,42666322,42666602	42663503,42666239,42666484,42666948	0.666667
body_of_pancreas_female_adult_51_years	chr2	200889135	200889157	200889156	-	High_confidence	4	4	17	1.621793	3.454822	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200881421	200889157	PPIL3|ENST00000492074.5	-	200881421,200885261,200885697,200886913,200887612,200888955	200881488,200885367,200885772,200886982,200887685,200889157	0.882353
body_of_pancreas_female_adult_51_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	43	46	46	4.388382	3.821159	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738504	16414586	STRG.30243.1	+	15738504,16414562	15738730,16414586	0.934783
body_of_pancreas_female_adult_51_years	chr2	164839323	164839361	164839323	+	RAMPAGE_only	5	5	20	1.907992	3.536887	chr2	164839310	164839440	SINE|Alu|AluJr	+	chr2	164840671	165094117	AC019197.1|ENST00000638199.1	+	164840671,164848841,164945583,164949934,164959254,164960898,165091119,165091829	164840822,164849402,164945671,164950133,164959329,164960967,165091299,165094117	0.950000
body_of_pancreas_female_adult_51_years	chr3	142159976	142160012	142160011	-	RAMPAGE_only	15	16	36	3.434386	3.378306	chr3	142159854	142160147	SINE|Alu|AluSx	-	chr3	142157526	142225607	GK5|NM_001039547.2	-	142157526,142170324,142171418,142172352,142177481,142181460,142182922,142185928,142186193,142186451,142187703,142198801,142204694,142213525,142215598,142225308	142165770,142170458,142171478,142172456,142177576,142181565,142183049,142185989,142186267,142186513,142187779,142198933,142204788,142213601,142215692,142225607	0.944444
body_of_pancreas_female_adult_51_years	chr1	12572759	12572761	12572759	-	RAMPAGE_only	2	5	7	0.667797	2.521641	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.857143
body_of_pancreas_female_adult_51_years	chr9	128921399	128921413	128921399	+	High_confidence	36	40	63	6.010176	5.111735	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.825397
body_of_pancreas_female_adult_51_years	chr7	100351407	100351463	100351422	+	RAMPAGE_only	4	4	19	1.812593	3.239098	chr7	100351420	100351962	LINE|L2|L2	-	chr7	100338598	100351900	STRG.72988.5	+	100338598,100345864,100349798,100351251	100338889,100345968,100349887,100351900	0.842105
body_of_pancreas_female_adult_51_years	chr16	2770192	2770193	2770192	+	High_confidence	12	12	16	1.526394	3.500000	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2770354	2771410	SRRM2|ENST00000573692.1	+	2770354,2770603,2770857,2771368	2770465,2770717,2771049,2771410	0.875000
body_of_pancreas_female_adult_51_years	chr1	153967486	153967512	153967497	+	High_confidence	7	8	28	2.671189	3.086049	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.750000
body_of_pancreas_female_adult_51_years	chr22	46933257	46933276	46933275	+	RAMPAGE_only	11	11	31	2.957388	4.348394	chr22	46933181	46933347	DNA|TcMar-Tigger|Tigger12	-	chr22	46773926	47175699	TBC1D22A|NM_001284305.1	+	46773926,46792519,46793500,46797443,46878652,46891265,46894783,46912073,46974289,46997633,47037070,47111507,47173497	46774235,46792576,46793841,46797620,46878723,46891394,46894846,46912188,46974399,46997709,47037198,47111603,47175699	0.741935
body_of_pancreas_female_adult_51_years	chr15	30624357	30624365	30624364	+	High_confidence	7	11	19	1.812593	2.687323	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.947368
body_of_pancreas_female_adult_51_years	chr5	147831440	147831466	147831440	-	High_confidence	2	2	11	1.049396	3.459432	chr5	147831290	147831398	LINE|CR1|L3	-	chr5	147824567	147831786	SPINK1|ENST00000296695.9	-	147824567,147828021,147829598,147831522	147824706,147828128,147829630,147831786	0.545455
body_of_pancreas_female_adult_51_years	chr8	143281669	143281687	143281686	-	High_confidence	5	5	12	1.144795	3.277613	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281690	MINCR|ENST00000518073.1	-	143280827,143281481	143280997,143281690	0.583333
body_of_pancreas_female_adult_51_years	chr2	53110387	53110407	53110387	-	RAMPAGE_only	10	10	17	1.621793	3.146286	chr2	53110232	53110381	SINE|Alu|AluSx	-	chr2	53105809	53116853	STRG.17672.2	-	53105809	53116853	1.000000
body_of_pancreas_female_adult_51_years	chr11	123797613	123797651	123797640	+	High_confidence	2	2	10	0.953996	2.725481	chr11	123797634	123797797	LTR|ERV1|MER83	-	chr11	123797430	123817413	STRG.106937.1	+	123797430,123797788,123816990	123797665,123797992,123817413	0.700000
body_of_pancreas_female_adult_51_years	chr20	18794077	18794086	18794085	+	High_confidence	11	11	20	1.907992	3.471354	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.950000
body_of_pancreas_female_adult_51_years	chr9	39810033	39810040	39810033	-	High_confidence	14	14	25	2.384990	3.886842	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.720000
body_of_pancreas_female_adult_51_years	chrX	16712879	16712909	16712889	-	High_confidence	4	5	12	1.144795	2.845351	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16609488	16712881	STRG.158031.1	-	16609488,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712334	16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712881	0.916667
body_of_pancreas_female_adult_51_years	chr1	46572113	46572277	46572276	-	High_confidence	11	11	64	6.105575	4.609473	chr1	46572222	46572517	SINE|Alu|AluSz	-	chr1	46558755	46572300	MKNK1|ENST00000532897.5	-	46558755,46561477,46562648,46565040,46568442,46572062	46558800,46561642,46562843,46565136,46568498,46572300	0.656250
body_of_pancreas_female_adult_51_years	chr1	200411673	200411691	200411690	+	High_confidence	4	4	18	1.717193	3.734522	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411693	200478360	AC104461.1|ENST00000647823.1	+	200411693,200444617,200472040,200473908,200477967	200411962,200444945,200472119,200474186,200478360	0.611111
body_of_pancreas_female_adult_51_years	chr4	185820828	185820863	185820828	+	High_confidence	10	11	41	3.911384	4.900116	chr4	185820741	185820911	LINE|L2|L2b	+	chr4	185820796	185821162	STRG.49110.1	+	185820796	185821162	0.804878
body_of_pancreas_female_adult_53_years	chr16	57898155	57898171	57898155	-	RAMPAGE_only	3	3	10	0.724929	2.721928	chr16	57897985	57898209	SINE|MIR|MIRc	+	chr16	57882339	57971112	CNGB1|ENST00000251102.12	-	57882339,57887854,57897396,57897795,57901351,57901527,57903821,57904733,57911752,57912929,57915248,57916128,57917267,57919098,57920386,57923272,57931715,57939429,57940233,57949352,57950380,57957340,57958409,57959887,57960481,57960839,57962564,57962841,57962973,57964129,57964486,57967127,57971059	57884457,57888074,57897543,57897914,57901435,57901625,57903981,57904875,57911875,57912994,57915335,57916179,57917476,57919254,57920544,57923380,57931878,57939592,57940321,57949439,57950540,57957377,57958485,57960065,57960530,57960915,57962610,57962872,57963064,57964202,57964544,57967294,57971112	0.500000
body_of_pancreas_female_adult_53_years	chr14	100829513	100829532	100829513	+	High_confidence	8	8	23	1.667336	3.649001	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.826087
body_of_pancreas_female_adult_53_years	chr11	287871	287941	287872	+	High_confidence	160	219	916	66.403455	7.567085	chr11	287740	288214	LINE|L2|L2a	-	chr11	288037	288987	AC136475.3|ENST00000534742.1	+	288037,288949	288811,288987	0.974891
body_of_pancreas_female_adult_53_years	chr12	4012947	4012963	4012947	+	High_confidence	131	147	238	17.253299	6.127267	chr12	4012703	4012997	SINE|Alu|AluJb	+	chr12	4012916	4019205	STRG.115258.1	+	4012916,4013691,4018981	4013114,4013786,4019205	0.873950
body_of_pancreas_female_adult_53_years	chr16	75222417	75222620	75222419	+	High_confidence	1632	1958	3545	256.987169	7.428607	chr16	75222363	75222517	SINE|MIR|MIR	-	chr16	75222609	75223607	CTRB1|ENST00000495583.1	+	75222609,75222968,75223140,75223447	75222871,75223048,75223219,75223607	0.583075
body_of_pancreas_female_adult_53_years	chr7	101217563	101217588	101217580	-	High_confidence	5	6	12	0.869914	3.277613	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.916667
body_of_pancreas_female_adult_53_years	chr7	134527596	134527597	134527596	+	High_confidence	66	66	67	4.857021	5.544098	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.985075
body_of_pancreas_female_adult_53_years	chr7	55688031	55688032	55688031	-	High_confidence	9	9	9	0.652436	2.947703	chr7	55687987	55688170	LINE|L1|L1MC4	+	chr7	55681073	55688032	FKBP9P1|NR_027340.1	-	55681073,55685171,55687778	55682825,55685335,55688032	1.000000
body_of_pancreas_female_adult_53_years	chr19	55676628	55676633	55676628	+	High_confidence	8	8	13	0.942407	3.022055	chr19	55676523	55676713	SINE|MIR|MIRb	-	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.923077
body_of_pancreas_female_adult_53_years	chr6	118651542	118651602	118651563	-	High_confidence	49	49	309	22.400292	6.881316	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.928803
body_of_pancreas_female_adult_53_years	chr8	32927967	32927983	32927976	+	RAMPAGE_only	18	22	47	3.407164	4.723874	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.659574
body_of_pancreas_female_adult_53_years	chr7	154928480	154928504	154928503	+	High_confidence	9	9	19	1.377364	3.683542	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.789474
body_of_pancreas_female_adult_53_years	chr5	147839219	147839258	147839237	-	High_confidence	20	33	85	6.161893	5.282458	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.705882
body_of_pancreas_female_adult_53_years	chr8	143281669	143281687	143281678	-	High_confidence	10	12	34	2.464757	4.477025	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143281069	143281665	MINCR|ENST00000524335.1	-	143281069,143281481	143281384,143281665	0.558824
body_of_pancreas_female_adult_53_years	chr2	54709705	54709737	54709705	+	High_confidence	11	12	39	2.827221	4.618736	chr2	54708539	54710604	LTR|ERV1|MER52D	+	chr2	54709795	54717642	STRG.18971.1	+	54709795,54711498,54717406	54710612,54711541,54717642	0.948718
body_of_pancreas_female_adult_53_years	chr2	240686318	240686363	240686336	+	High_confidence	114	132	429	31.099435	4.025671	chr2	240685606	240686514	LTR|ERV1|MER49	-	chr2	240686333	240690414	AC011298.1|ENST00000407635.2	+	240686333,240688415,240688601	240687821,240688512,240690414	0.997669
body_of_pancreas_female_adult_53_years	chr12	53464793	53464823	53464795	+	RAMPAGE_only	3	5	21	1.522350	3.405822	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.809524
body_of_pancreas_female_adult_53_years	chr8	117145924	117145925	117145924	+	RAMPAGE_only	14	20	20	1.449857	3.821928	chr8	117145842	117146265	LINE|L1|L1MA4	+	chr8	117135327	117174091	SLC30A8|ENST00000456015.6	+	117135327,117146953,117152943,117157690,117161737,117163424,117171033,117172535	117135398,117147153,117153090,117157844,117161888,117163530,117171168,117174091	0.650000
body_of_pancreas_female_adult_53_years	chr20	24930628	24930666	24930639	+	High_confidence	54	54	260	18.848142	6.417789	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930643	24932983	STRG.160605.1	+	24930643,24931346	24930774,24932983	0.896154
body_of_pancreas_female_adult_53_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	12	12	12	0.869914	2.855389	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.750000
body_of_pancreas_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	12	12	12	0.869914	3.418296	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.916667
body_of_pancreas_female_adult_53_years	chr4	107682394	107682430	107682429	-	RAMPAGE_only	33	34	50	3.624643	5.027569	chr4	107682312	107682592	DNA|TcMar-Tigger|Tigger17c	-	chr4	107653492	107720222	PAPSS1|ENST00000511304.5	-	107653492,107654694,107656895,107659958,107682014,107687038,107720119	107653626,107654900,107657007,107660072,107682133,107687177,107720222	0.840000
body_of_pancreas_female_adult_53_years	chr10	116558375	116558379	116558375	+	RAMPAGE_only	3	3	9	0.652436	2.500000	chr10	116558191	116558493	SINE|Alu|AluY	-	chr10	116545930	116567855	PNLIP|ENST00000369221.2	+	116545930,116546092,116547293,116548359,116551097,116553726,116555177,116555387,116555999,116559153,116560415,116561471,116567734	116545958,116546138,116547448,116548482,116551232,116553838,116555297,116555507,116556118,116559283,116560524,116561636,116567855	0.666667
body_of_pancreas_female_adult_53_years	chr4	4269609	4269614	4269609	-	High_confidence	23	24	40	2.899714	3.798223	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.975000
body_of_pancreas_female_adult_53_years	chr1	235454157	235454230	235454157	-	RAMPAGE_only	4	6	30	2.174786	3.435699	chr1	235454005	235454137	SINE|Alu|FLAM_C	-	chr1	235447189	235504481	B3GALNT2|NM_152490.4	-	235447189,235453089,235454155,235455558,235458602,235465635,235470849,235480053,235484321,235489167,235494680,235504140	235450340,235453146,235454315,235455684,235458786,235465714,235470960,235480149,235484515,235489268,235494828,235504481	0.933333
body_of_pancreas_female_adult_53_years	chrX	102959032	102959044	102959034	+	RAMPAGE_only	5	7	18	1.304871	3.807764	chrX	102958500	102960936	LINE|L1|L1PA15	-	chrX	102961548	102963513	STRG.171619.2	+	102961548	102963513	0.666667
body_of_pancreas_female_adult_53_years	chr1	1721636	1721637	1721636	-	High_confidence	5	5	7	0.507450	2.807355	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.714286
body_of_pancreas_female_adult_53_years	chr2	240686436	240686437	240686436	+	High_confidence	11	13	15	1.087393	2.573557	chr2	240685606	240686514	LTR|ERV1|MER49	-	chr2	240686333	240690414	AC011298.1|ENST00000407635.2	+	240686333,240688415,240688601	240687821,240688512,240690414	1.000000
body_of_pancreas_female_adult_53_years	chr19	20321296	20321306	20321296	-	High_confidence	4	4	11	0.797421	3.095795	chr19	20320046	20321730	LTR|ERVK|HERVK14-int	-	chr19	20301114	20321286	STRG.155768.1	-	20301114,20321185	20301387,20321286	0.818182
body_of_pancreas_female_adult_53_years	chr9	128921399	128921413	128921412	+	High_confidence	8	10	24	1.739829	3.606937	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921411	128933788	PHYHD1|ENST00000419552.5	+	128921411,128921929,128922282,128927037,128933781	128921601,128922047,128922356,128927196,128933788	0.500000
body_of_pancreas_female_adult_53_years	chr4	185820783	185820863	185820783	+	High_confidence	13	13	86	6.234385	5.420110	chr4	185820741	185820911	LINE|L2|L2b	+	chr4	185820842	185827518	STRG.51874.1	+	185820842,185825817	185822425,185827518	1.000000
body_of_pancreas_female_adult_53_years	chr1	8022384	8022592	8022556	-	RAMPAGE_only	10	11	93	6.741835	5.152061	chr1	8022378	8022538	SINE|MIR|MIRc	-	chr1	8014039	8026283	STRG.641.5	-	8014039,8015307,8015494	8014396,8015384,8026283	0.989247
body_of_pancreas_female_adult_53_years	chr9	128684459	128684485	128684459	-	High_confidence	5	5	33	2.392264	4.476064	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683770	128684460	STRG.97628.1	-	128683770	128684460	0.696970
body_of_pancreas_female_adult_53_years	chr7	130271337	130271489	130271389	+	RAMPAGE_only	8	13	97	7.031807	4.332042	chr7	130271239	130271802	LTR|ERV1|MER51A	-	chr7	130266880	130289798	STRG.80812.3	+	130266880,130268928,130269668,130270692,130275148,130276627,130277825,130279462,130282103,130289559	130266952,130269010,130269803,130273177,130275247,130276738,130277916,130279662,130282188,130289798	1.000000
body_of_pancreas_female_adult_53_years	chr8	16186271	16186272	16186271	-	High_confidence	9	11	14	1.014900	3.664498	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	1.000000
body_of_pancreas_female_adult_53_years	chr20	45312860	45312871	45312860	+	RAMPAGE_only	16	17	34	2.464757	4.043058	chr20	45312711	45313024	SINE|Alu|AluJb	+	chr20	45306850	45316959	STRG.161670.5	+	45306850,45308142,45309566,45311588,45312220,45314034,45314412,45316476,45316685	45306944,45308251,45309692,45311954,45313605,45314144,45316342,45316580,45316959	1.000000
body_of_pancreas_female_adult_53_years	chr15	91408711	91408755	91408711	+	High_confidence	5	6	16	1.159886	3.373557	chr15	91408656	91408747	SINE|MIR|MIRc	-	chr15	91408707	91605211	CRAT37|ENST00000555947.5	+	91408707,91473220,91604876	91408841,91473316,91605211	0.562500
body_of_pancreas_female_adult_53_years	chr1	226871341	226871349	226871348	+	High_confidence	4	4	9	0.652436	2.947703	chr1	226871299	226871488	SINE|MIR|MIR3	-	chr1	226871267	226896098	PSEN2|ENST00000366782.5	+	226871267,226875364,226880468,226881887,226883704,226885537,226888090,226888828,226890034,226891277,226891742,226894006,226895423	226871404,226875550,226880724,226882048,226883919,226885679,226888158,226889049,226890133,226891361,226891844,226894125,226896098	1.000000
body_of_pancreas_female_adult_53_years	chr10	116595138	116595184	116595170	+	RAMPAGE_only	2	2	11	0.797421	3.121928	chr10	116595073	116595197	SINE|MIR|MIR	-	chr10	116590959	116609175	PNLIPRP1|ENST00000526223.5	+	116590959,116591129,116591770,116592415,116594318,116597827,116598038,116600046,116601071,116604029,116605385,116609052	116590995,116591178,116591925,116592541,116596322,116597947,116598166,116600313,116601201,116604138,116605553,116609175	0.909091
body_of_pancreas_female_adult_53_years	chr9	83154225	83154251	83154250	-	RAMPAGE_only	4	7	16	1.159886	3.456565	chr9	83154086	83154297	SINE|MIR|MIRc	+	chr9	82979584	83063128	RASEF|NM_152573.3	-	82979584,82990390,82992905,82997011,82998364,83000168,83000432,83000895,83004497,83005415,83007436,83009640,83012433,83015804,83022335,83025774,83062436	82982782,82990467,82993025,82997126,82998446,83000316,83000570,83001130,83004586,83005500,83007505,83009756,83012511,83015900,83022426,83025921,83063128	0.500000
body_of_pancreas_female_adult_53_years	chr10	110884119	110884382	110884348	+	RAMPAGE_only	6	6	86	6.234385	4.503859	chr10	110884269	110884365	DNA|TcMar-Tigger|Tigger7	+	chr10	110871954	110885339	STRG.104802.12	+	110871954,110883002	110881535,110885339	0.976744
body_of_pancreas_female_adult_53_years	chr8	47360804	47360829	47360804	+	High_confidence	6	6	12	0.869914	3.095795	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47440397	SPIDR|ENST00000521918.6	+	47360818,47396375,47407860,47440322	47360949,47396626,47407961,47440397	0.666667
body_of_pancreas_female_adult_53_years	chr5	150778348	150778396	150778388	+	High_confidence	28	29	67	4.857021	5.614378	chr5	150778285	150778464	SINE|MIR|MIRb	-	chr5	150778804	150796734	SMIM3|ENST00000648745.1	+	150778804,150782473,150795429	150778972,150782590,150796734	0.552239
body_of_pancreas_female_adult_53_years	chr11	65434523	65434623	65434583	+	RAMPAGE_only	8	8	72	5.219486	5.160468	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.986111
body_of_pancreas_female_adult_53_years	chr17	28233986	28234043	28234030	-	High_confidence	40	44	392	28.417199	6.831905	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28230560	28234047	STRG.146998.1	-	28230560,28233917	28233342,28234047	0.775510
body_of_pancreas_female_adult_53_years	chr8	21129079	21129110	21129087	-	RAMPAGE_only	21	22	51	3.697136	5.272773	chr8	21128762	21129274	LINE|L2|L2a	+	chr8	20952644	20973877	AC015468.3|ENST00000518967.1	-	20952644,20973732	20952916,20973877	0.529412
body_of_pancreas_female_adult_53_years	chr8	102978504	102978519	102978518	+	High_confidence	6	6	10	0.724929	3.121928	chr8	102978224	102978995	DNA|TcMar-Tigger|Tigger6a	+	chr8	102978260	102979675	STRG.87593.7	+	102978260	102979675	0.900000
body_of_pancreas_female_adult_53_years	chr2	178874960	178875018	178875017	-	RAMPAGE_only	11	14	69	5.002007	5.309692	chr2	178874815	178875282	LINE|L1|L1MEg1	+	chr2	178835755	178884951	CCDC141|ENST00000343876.6	-	178835755,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900	178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178884951	0.782609
body_of_pancreas_female_adult_53_years	chr10	110881044	110881057	110881044	+	High_confidence	3	4	9	0.652436	3.169925	chr10	110881075	110881155	DNA|TcMar-Mariner|MADE2	+	chr10	110880318	110887798	PDCD4|ENST00000492932.5	+	110880318,110881232,110883002,110885252,110887664	110880485,110881535,110883097,110885366,110887798	0.555556
body_of_pancreas_female_adult_53_years	chr12	26832797	26832821	26832797	-	High_confidence	2	2	9	0.652436	3.000000	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26716161	26832786	ITPR2|ENST00000545235.1	-	26716161,26722396,26724655,26725649,26832689	26716242,26722555,26724742,26725765,26832786	0.888889
body_of_pancreas_female_adult_53_years	chr22	46933275	46933278	46933275	+	RAMPAGE_only	7	7	14	1.014900	3.546594	chr22	46933181	46933347	DNA|TcMar-Tigger|Tigger12	-	chr22	46773926	47175699	TBC1D22A|NM_001284305.1	+	46773926,46792519,46793500,46797443,46878652,46891265,46894783,46912073,46974289,46997633,47037070,47111507,47173497	46774235,46792576,46793841,46797620,46878723,46891394,46894846,46912188,46974399,46997709,47037198,47111603,47175699	0.500000
body_of_pancreas_female_adult_53_years	chr2	174410287	174410325	174410322	+	High_confidence	5	5	19	1.377364	3.642150	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.631579
body_of_pancreas_female_adult_53_years	chr12	75983814	75983831	75983814	-	RAMPAGE_only	4	4	17	1.232379	3.500000	chr12	75983502	75984058	LINE|L2|L2a	+	chr12	75693133	75985936	STRG.120162.1	-	75693133,75694856,75927383,75956290,75985720	75694770,75694947,75927476,75956371,75985936	0.647059
body_of_pancreas_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	89	89	89	6.451864	3.843585	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.988764
body_of_pancreas_female_adult_53_years	chr4	184537538	184537578	184537577	-	High_confidence	6	7	34	2.464757	4.513646	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184536646	184537359	STRG.51681.1	-	184536646	184537359	0.705882
body_of_pancreas_female_adult_53_years	chr21	39657326	39657337	39657336	+	High_confidence	6	6	15	1.087393	3.521641	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657326	39662889	B3GALT5|ENST00000380618.5	+	39657326,39659752,39660559	39657599,39659912,39662889	0.866667
body_of_pancreas_female_adult_53_years	chr10	17891768	17891769	17891768	+	RAMPAGE_only	9	9	13	0.942407	3.084963	chr10	17891627	17892603	LINE|L1|L1MCa	-	chr10	17822918	17911443	STRG.99278.1	+	17822918,17827541,17833674,17840692,17845288,17849578,17852966,17856241,17861386,17863533,17866561,17870245,17870847,17871981,17873783,17875089,17877899,17879720,17880524,17881066,17885268,17894209,17898033,17900787,17901972,17906885,17907533,17909305,17910214	17823475,17827715,17833839,17840806,17845435,17849764,17853124,17856352,17861502,17863682,17866761,17870373,17870935,17872126,17873825,17875253,17877967,17879821,17880670,17881181,17885435,17894312,17898266,17900953,17902122,17906999,17907698,17909347,17911443	0.692308
body_of_pancreas_female_adult_53_years	chr3	12994707	12994726	12994717	-	High_confidence	2	2	7	0.507450	2.584963	chr3	12994635	12994703	SINE|MIR|MIRc	-	chr3	12908348	12994384	IQSEC1|ENST00000648386.1	-	12908348,12909272,12911628,12913427,12915103,12915593,12920429,12922119,12924580,12935447,12941570,12994080	12908525,12909434,12911728,12913553,12915133,12915733,12920596,12922242,12924742,12936697,12941865,12994384	0.857143
body_of_pancreas_female_adult_53_years	chr17	336846	336879	336846	-	RAMPAGE_only	16	20	45	3.262178	4.535863	chr17	336507	336888	LINE|L2|L2	+	chr17	247119	337952	STRG.145293.11	-	247119,281767,319419,321271,327466,333758,335774	247285,281854,319549,321415,327579,333934,337952	0.911111
body_of_pancreas_female_adult_53_years	chr11	2376179	2376194	2376193	+	High_confidence	3	3	10	0.724929	2.921928	chr11	2376100	2376285	DNA|hAT-Charlie|MER3	-	chr11	2376201	2395429	CD81|ENST00000530648.5	+	2376201,2376820,2390411,2394094,2394971,2395415	2376357,2376920,2390526,2394192,2395046,2395429	0.800000
body_of_pancreas_female_adult_53_years	chr21	22062638	22062658	22062638	-	High_confidence	49	51	137	9.931521	5.851244	chr21	22062350	22062974	LINE|L2|L2a	+	chr21	22038929	22062750	STRG.162868.2	-	22038929,22042944,22062008	22041435,22043087,22062750	0.963504
body_of_pancreas_female_adult_53_years	chr9	136341948	136341951	136341950	+	RAMPAGE_only	4	6	9	0.652436	2.750000	chr9	136341826	136341950	SINE|Alu|AluJr	-	chr9	136332469	136359601	STRG.98098.2	+	136332469,136334446,136335965,136336920,136337440,136337845,136338554,136339706,136340869,136348696,136349586,136355689,136356341,136358013	136332555,136334668,136336101,136337072,136337564,136337961,136338710,136339815,136340993,136348767,136349763,136355846,136356550,136359601	0.777778
body_of_pancreas_female_adult_53_years	chr2	185425244	185425283	185425282	+	High_confidence	5	5	17	1.232379	3.337175	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185425014	185496487	STRG.26989.1	+	185425014,185434096,185483033,185496442	185425507,185434187,185483091,185496487	0.588235
body_of_pancreas_female_adult_53_years	chr7	104926626	104926641	104926626	-	High_confidence	38	38	91	6.596850	5.700233	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104911915	104926630	LHFPL3-AS2|ENST00000453666.2	-	104911915,104915705,104917559,104920384,104926452	104912076,104915827,104917980,104920425,104926630	0.692308
body_of_pancreas_female_adult_53_years	chr8	99891978	99892057	99892056	-	RAMPAGE_only	54	54	131	9.496564	4.701582	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
body_of_pancreas_female_adult_53_years	chr20	45312625	45312702	45312701	+	RAMPAGE_only	9	9	35	2.537250	3.568382	chr20	45312711	45313024	SINE|Alu|AluJb	+	chr20	45306850	45316959	STRG.161670.5	+	45306850,45308142,45309566,45311588,45312220,45314034,45314412,45316476,45316685	45306944,45308251,45309692,45311954,45313605,45314144,45316342,45316580,45316959	0.971429
body_of_pancreas_female_adult_53_years	chr13	43055406	43055407	43055406	+	High_confidence	7	7	9	0.652436	2.947703	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43055424	43059855	STRG.124499.1	+	43055424	43059855	0.888889
body_of_pancreas_female_adult_53_years	chr12	4022060	4022103	4022091	-	High_confidence	14	14	91	6.596850	5.229815	chr12	4022091	4022233	LTR|ERV1|HERVH-int	+	chr12	4021565	4022047	STRG.115335.1	-	4021565	4022047	0.791209
body_of_pancreas_female_adult_53_years	chr17	59651214	59651253	59651214	+	RAMPAGE_only	3	3	10	0.724929	3.121928	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59648239	59656231	CLTC|ENST00000472129.3	+	59648239,59651202,59655853	59648401,59651316,59656231	0.500000
body_of_pancreas_female_adult_53_years	chr15	39109798	39109799	39109798	-	RAMPAGE_only	42	42	42	3.044700	4.975418	chr15	39109674	39109895	LINE|CR1|L3	+	chr15	38878807	39273890	STRG.135227.1	-	38878807,38886696,38974154,39071502,39109700,39273839	38885628,38886929,38974235,39071608,39109798,39273890	0.571429
body_of_pancreas_female_adult_53_years	chr13	114196793	114196794	114196793	-	High_confidence	72	72	74	5.364471	5.555138	chr13	114196682	114197555	LTR|ERV1|MER4D1	-	chr13	114196230	114196786	STRG.127265.1	-	114196230	114196786	0.527027
body_of_pancreas_female_adult_53_years	chr17	76557847	76557862	76557847	+	High_confidence	3	3	6	0.434957	2.584963	chr17	76557889	76558010	SINE|MIR|MIR	+	chr17	76557791	76565343	STRG.150611.2	+	76557791,76558944,76561287,76563118,76563778	76558600,76559043,76561398,76563753,76565343	1.000000
body_of_pancreas_female_adult_53_years	chr7	142742059	142742060	142742059	-	High_confidence	53	53	74	5.364471	5.031395	chr7	142741826	142742297	LTR|ERVL|MER70B	-	chr7	142740989	142741749	STRG.81807.1	-	142740989	142741749	0.810811
body_of_pancreas_female_adult_53_years	chr6	28354152	28354206	28354205	-	High_confidence	43	44	87	6.306878	5.873866	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28349516	28354220	STRG.64327.4	-	28349516,28354130	28353952,28354220	0.701149
body_of_pancreas_female_adult_53_years	chr1	200411683	200411691	200411686	+	High_confidence	6	6	15	1.087393	3.373557	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411693	200478360	AC104461.1|ENST00000647823.1	+	200411693,200444617,200472040,200473908,200477967	200411962,200444945,200472119,200474186,200478360	0.533333
body_of_pancreas_female_adult_53_years	chr4	128428005	128428016	128428005	+	High_confidence	15	15	25	1.812321	4.103465	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428002	128485049	STRG.49245.2	+	128428002,128466607,128470049,128470351,128481672,128483328	128428298,128466772,128470216,128470549,128481750,128485049	0.600000
body_of_pancreas_female_adult_53_years	chr1	227142956	227142957	227142956	-	RAMPAGE_only	8	8	10	0.724929	2.521928	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317714	CDC42BPA|ENST00000334218.9	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227059372,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227112670,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227059411,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227112913,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317714	1.000000
body_of_pancreas_female_adult_53_years	chr8	18063185	18063207	18063206	-	High_confidence	3	5	8	0.579943	2.521641	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.875000
body_of_pancreas_female_adult_53_years	chr10	116625709	116625729	116625709	+	RAMPAGE_only	5	5	20	1.449857	4.021928	chr10	116625410	116625827	DNA|hAT-Charlie|Charlie4a	-	chr10	116621305	116645143	PNLIPRP2|ENST00000591655.3	+	116621305,116623944,116625945,116626863,116627762,116629942,116631237,116634840,116636784,116637127,116638373,116642114,116645033	116621354,116624099,116626071,116626998,116627874,116630062,116631357,116634959,116636914,116637132,116638480,116642282,116645143	0.700000
body_of_pancreas_female_adult_53_years	chr2	67177618	67177643	67177618	-	RAMPAGE_only	2	2	9	0.652436	2.750000	chr2	67177475	67177676	LINE|L2|L2	+	chr2	67169556	67325147	STRG.20266.1	-	67169556,67203115,67205508,67321804,67324404,67325084	67177712,67203173,67205563,67321844,67324484,67325147	0.888889
body_of_pancreas_female_adult_53_years	chr21	41426098	41426157	41426098	+	High_confidence	2	2	13	0.942407	3.392747	chr21	41426026	41426113	DNA|hAT-Charlie|MER5A	-	chr21	41426030	41459214	MX1|NM_002462.4	+	41426030,41427205,41427754,41430532,41432049,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41426263,41427304,41427866,41430608,41432175,41436029,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	0.923077
body_of_pancreas_female_adult_53_years	chr6	76774949	76775007	76774949	+	High_confidence	51	52	280	20.297999	6.346059	chr6	76774716	76775166	LTR|ERVL|MER70A	+	chr6	76774982	76775860	AL590426.2|ENST00000607287.1	+	76774982,76775167	76775075,76775860	0.732143
body_of_pancreas_female_adult_53_years	chr1	166850052	166850081	166850052	+	RAMPAGE_only	2	2	9	0.652436	2.500000	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.888889
body_of_pancreas_female_adult_53_years	chr2	55281003	55281006	55281003	+	RAMPAGE_only	2	2	7	0.507450	2.521641	chr2	55280758	55281335	LTR|ERV1|LTR10C	-	chr2	55282349	55314446	AC012358.3|ENST00000625718.2	+	55282349,55308831,55313987	55282434,55308927,55314446	0.571429
body_of_pancreas_female_adult_53_years	chr12	4021941	4021967	4021941	-	High_confidence	6	6	16	1.159886	3.189898	chr12	4018993	4021963	LTR|ERV1|HERVH-int	+	chr12	4021565	4022047	STRG.115335.1	-	4021565	4022047	0.750000
body_of_pancreas_female_adult_53_years	chr7	55687987	55687990	55687987	-	High_confidence	15	17	42	3.044700	4.863292	chr7	55687987	55688170	LINE|L1|L1MC4	+	chr7	55681073	55688032	FKBP9P1|NR_027340.1	-	55681073,55685171,55687778	55682825,55685335,55688032	0.880952
body_of_pancreas_female_adult_53_years	chr20	34546843	34546850	34546843	+	High_confidence	5	5	10	0.724929	2.947703	chr20	34546707	34546884	LTR|ERVL-MaLR|MLT1J	-	chr20	34546853	34560345	MAP1LC3A|ENST00000374837.7	+	34546853,34549904,34559207,34559346,34559735	34546916,34550029,34559263,34559453,34560345	0.500000
body_of_pancreas_female_adult_53_years	chr15	65300634	65300635	65300634	-	High_confidence	15	15	15	1.087393	3.056565	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65266576	65300618	PARP16|ENST00000558873.1	-	65266576,65270934,65282546,65300196	65266768,65271072,65282632,65300618	0.533333
body_of_pancreas_female_adult_53_years	chr2	182030747	182030782	182030773	+	High_confidence	9	9	33	2.392264	4.106949	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.818182
body_of_pancreas_female_adult_53_years	chr16	75225666	75225888	75225666	+	High_confidence	30	35	161	11.671350	6.123198	chr16	75225506	75225759	SINE|Alu|AluYm1	-	chr16	75224816	75226338	CTRB1|ENST00000642378.1	+	75224816,75225643	75225397,75226338	0.875776
body_of_pancreas_female_adult_53_years	chr6	107872810	107872888	107872863	-	RAMPAGE_only	3	3	22	1.594843	4.121928	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.863636
body_of_pancreas_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	381	417	589	42.698291	5.513382	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.984720
body_of_pancreas_female_adult_53_years	chr6	44229593	44229601	44229593	+	High_confidence	2	2	7	0.507450	2.584963	chr6	44229546	44229598	LINE|CR1|L3b	-	chr6	44229770	44232428	SLC29A1|ENST00000646251.1	+	44229770,44229906,44230366,44230567,44230810,44231363,44231997,44232342	44229791,44230046,44230481,44230665,44230889,44231461,44232106,44232428	0.571429
body_of_pancreas_female_adult_53_years	chr2	46903422	46903463	46903462	-	RAMPAGE_only	4	4	11	0.797421	3.321928	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.909091
body_of_pancreas_female_adult_53_years	chr6	70394883	70394884	70394883	+	High_confidence	49	49	53	3.842121	5.132944	chr6	70394625	70395013	LTR|ERV1|MER48	+	chr6	70394886	70399417	AL365226.2|ENST00000418403.1	+	70394886,70395229,70399214	70395043,70395266,70399417	0.603774
body_of_pancreas_female_adult_53_years	chr11	287699	287725	287723	+	High_confidence	18	25	80	5.799428	5.743548	chr11	287662	287740	LINE|L2|L2a	-	chr11	288037	288987	AC136475.3|ENST00000534742.1	+	288037,288949	288811,288987	0.537500
body_of_pancreas_female_adult_53_years	chr13	46097238	46097239	46097238	+	RAMPAGE_only	7	7	9	0.652436	2.947703	chr13	46096795	46098485	LTR|ERVL|ERV3-16A3_I-int	+	chr13	46052901	46113332	CPB2-AS1|ENST00000415033.2	+	46052901,46094852,46098397,46113183	46052965,46095002,46098781,46113332	0.555556
body_of_pancreas_female_adult_53_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	14	15	17	1.232379	3.381580	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.647059
body_of_pancreas_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	606	615	659	47.772791	6.276549	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.775417
body_of_pancreas_female_adult_53_years	chr5	32403145	32403170	32403145	-	RAMPAGE_only	3	3	10	0.724929	3.121928	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354851	32418278	STRG.52941.2	-	32354851,32363947,32364163,32379114,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647	32355939,32364045,32364275,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32418278	1.000000
body_of_pancreas_female_adult_53_years	chr16	20310311	20311094	20310920	-	RAMPAGE_only	1953	2047	12821	929.430888	8.440238	chr16	20310748	20311056	SINE|Alu|AluSx1	-	chr16	20310488	20327507	GP2|ENST00000341642.9	-	20310488,20314656,20315955,20317212,20318184,20319619,20320261,20322868,20326337,20327466	20311281,20314701,20316040,20317375,20318430,20319768,20320473,20322979,20326467,20327507	0.638406
body_of_pancreas_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	570	583	1915	138.823816	7.307985	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.533681
body_of_pancreas_female_adult_53_years	chrX	48577896	48577944	48577896	+	RAMPAGE_only	23	23	76	5.509457	3.701544	chrX	48577882	48578092	SINE|Alu|AluSx	+	chrX	48575898	48578291	RBM3|ENST00000354480.2	+	48575898,48576507,48577025	48576419,48576604,48578291	0.986842
body_of_pancreas_female_adult_53_years	chr16	75206484	75206552	75206502	-	High_confidence	4	7	37	2.682236	4.648510	chr16	75206482	75206663	SINE|MIR|MIRb	+	chr16	75204102	75205992	CTRB2|ENST00000567767.5	-	75204102,75205332,75205741,75205912	75204322,75205513,75205820,75205992	0.567568
body_of_pancreas_female_adult_53_years	chr17	77127945	77127965	77127964	+	High_confidence	3	3	7	0.507450	2.584963	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.714286
body_of_pancreas_female_adult_53_years	chr9	20658312	20658349	20658348	+	High_confidence	20	33	69	5.002007	4.440769	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658350	20770112	STRG.91624.4	+	20658350,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.913043
body_of_pancreas_female_adult_53_years	chr12	7502504	7502529	7502504	-	High_confidence	3	3	12	0.869914	2.845351	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.750000
body_of_pancreas_female_adult_53_years	chr7	152460665	152460677	152460665	-	RAMPAGE_only	18	21	40	2.899714	4.753226	chr7	152460557	152460804	LINE|L2|L2a	-	chr7	152193872	152436790	STRG.82207.4	-	152193872,152194228,152194439,152195906,152199278,152202933,152205105,152207299,152220522,152222000,152222572,152224014,152224434,152229922,152230219,152235816,152238706,152247901,152249875,152250852,152251938,152252545,152263015,152265037,152273704,152309965,152311797,152315137,152330600,152358586,152435625,152436511	152194128,152194261,152194568,152196011,152199459,152203064,152205225,152207428,152220735,152222066,152222682,152224179,152224616,152230027,152230321,152235933,152238826,152248620,152249953,152250966,152252090,152252715,152263130,152265209,152273867,152310075,152311946,152315338,152330739,152358675,152435787,152436790	0.700000
body_of_pancreas_female_adult_53_years	chr17	4143199	4143215	4143199	+	High_confidence	47	47	120	8.699143	5.347808	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.975000
body_of_pancreas_female_adult_53_years	chr16	3129638	3129655	3129638	-	RAMPAGE_only	3	3	8	0.579943	2.500000	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3128832	3132042	ZNF213-AS1|ENST00000573447.1	-	3128832,3131746	3129653,3132042	0.625000
body_of_pancreas_female_adult_53_years	chr5	117454948	117454966	117454949	+	High_confidence	26	46	92	6.669343	5.813951	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117454955	117473926	STRG.58254.2	+	117454955,117471901,117473870	117455454,117471938,117473926	0.608696
body_of_pancreas_female_adult_53_years	chr18	59666165	59666166	59666165	-	High_confidence	7	10	10	0.724929	3.321928	chr18	59665992	59666361	LTR|ERVL-MaLR|THE1B	-	chr18	59448045	59666162	CCBE1|ENST00000589419.1	-	59448045,59454850,59466738,59469472,59480185,59666075	59448103,59454951,59466891,59469607,59480238,59666162	0.600000
body_of_pancreas_female_adult_53_years	chr12	16608172	16608189	16608172	-	High_confidence	6	6	19	1.377364	3.576618	chr12	16608118	16608177	LTR|ERV1|MER4-int	+	chr12	16560474	16607924	LMO3|ENST00000536509.5	-	16560474,16600713,16606065,16607660	16560538,16600868,16606132,16607924	0.631579
body_of_pancreas_female_adult_53_years	chr9	123179187	123179221	123179220	-	RAMPAGE_only	8	9	15	1.087393	3.506891	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.933333
body_of_pancreas_female_adult_53_years	chr1	174874395	174874441	174874433	+	High_confidence	7	7	41	2.972207	4.540240	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.780488
body_of_pancreas_female_adult_53_years	chr6	42960392	42960411	42960410	+	High_confidence	4	4	8	0.579943	2.807355	chr6	42960249	42960412	LTR?|LTR?|MamRep605	-	chr6	42960753	42963880	GNMT|NM_018960.5	+	42960753,42962211,42962761,42963071,42963327,42963534	42960973,42962339,42962878,42963214,42963449,42963880	0.750000
body_of_pancreas_female_adult_53_years	chr7	55688305	55688366	55688350	-	High_confidence	32	34	111	8.046707	5.425827	chr7	55688306	55688503	SINE|MIR|MIRb	+	chr7	55681073	55688356	STRG.75659.2	-	55681073,55685171,55687778	55682825,55685335,55688356	0.963964
body_of_pancreas_female_adult_53_years	chr19	47259340	47259355	47259354	+	RAMPAGE_only	7	7	17	1.232379	3.750000	chr19	47258829	47259503	LINE|L2|L2b	-	chr19	47257539	47265182	STRG.157781.5	+	47257539,47258329,47258558,47260320,47260587,47264602,47264772	47257909,47258403,47258663,47260422,47260839,47264686,47265182	0.705882
body_of_pancreas_female_adult_53_years	chr1	22010413	22010561	22010560	+	High_confidence	32	33	170	12.323785	4.377752	chr1	22010352	22010637	SINE|Alu|AluSg7	+	chr1	22010649	22010946	RN7SL186P|ENST00000466485.3	+	22010649	22010946	0.694118
body_of_pancreas_female_adult_53_years	chr14	65297071	65297072	65297071	+	RAMPAGE_only	27	27	30	2.174786	4.481728	chr14	65296889	65297273	LTR|ERVL-MaLR|MSTA	+	chr14	65410591	65744121	FUT8|ENST00000360689.9	+	65410591,65455620,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65411993,65455718,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65744121	0.833333
body_of_pancreas_female_adult_53_years	chr10	94683483	94683510	94683483	+	High_confidence	3	3	8	0.579943	2.500000	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_001128925.1	+	94683493,94687769,94688124,94694916,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94720537,94724533,94733438,94736190	1.000000
body_of_pancreas_female_adult_53_years	chr1	234531031	234531033	234531031	+	High_confidence	3	5	8	0.579943	2.521641	chr1	234531002	234531158	SINE|MIR|MIR	+	chr1	234531251	234531475	STRG.14469.1	+	234531251	234531475	0.500000
body_of_pancreas_female_adult_53_years	chr16	75217850	75217873	75217872	+	RAMPAGE_only	4	4	9	0.652436	2.947703	chr16	75217840	75218135	SINE|Alu|AluSx	+	chr16	75218985	75224924	CTRB1|NM_001906.4	+	75218985,75222767,75222968,75223140,75223447,75224054,75224704	75219059,75222871,75223048,75223219,75223628,75224188,75224924	0.666667
body_of_pancreas_female_adult_53_years	chr16	20674726	20674735	20674734	+	High_confidence	3	3	7	0.507450	2.521641	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.571429
body_of_pancreas_female_adult_53_years	chr1	21995463	21995464	21995463	+	RAMPAGE_only	7	7	11	0.797421	2.921928	chr1	21995436	21995538	LTR|ERVL-MaLR|MLT1J	+	chr1	21981101	21998642	CELA3B|ENST00000400277.2	+	21981101,21983693,21984188,21986530,21998150	21981172,21983830,21984331,21986683,21998642	0.818182
body_of_pancreas_female_adult_53_years	chr20	18794077	18794086	18794085	+	High_confidence	14	14	26	1.884814	4.243856	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.961538
body_of_pancreas_female_adult_53_years	chr9	121313981	121314021	121314002	+	RAMPAGE_only	11	11	52	3.769628	4.647153	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
body_of_pancreas_female_adult_53_years	chr21	29077079	29077132	29077079	+	High_confidence	3	3	13	0.942407	3.584963	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077109	29091997	STRG.163387.2	+	29077109,29085812,29091500,29091667	29077713,29085917,29091576,29091997	0.846154
body_of_pancreas_female_adult_53_years	chr21	29077476	29077487	29077486	+	High_confidence	9	9	26	1.884814	4.243856	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.615385
body_of_pancreas_female_adult_53_years	chr20	45312815	45312828	45312815	+	RAMPAGE_only	8	8	21	1.522350	2.910440	chr20	45312711	45313024	SINE|Alu|AluJb	+	chr20	45306850	45316959	STRG.161670.5	+	45306850,45308142,45309566,45311588,45312220,45314034,45314412,45316476,45316685	45306944,45308251,45309692,45311954,45313605,45314144,45316342,45316580,45316959	1.000000
body_of_pancreas_female_adult_53_years	chr11	71745881	71745936	71745935	+	High_confidence	41	43	186	13.483671	5.898916	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.956989
body_of_pancreas_female_adult_53_years	chr10	116609490	116609491	116609490	-	High_confidence	7	7	11	0.797421	3.321928	chr10	116609405	116609464	SINE|MIR|MIR3	-	chr10	116602050	116609724	STRG.105566.2	-	116602050	116609724	0.909091
body_of_pancreas_female_adult_53_years	chr12	24852042	24852063	24852048	+	High_confidence	12	12	40	2.899714	4.260424	chr12	24851932	24852292	LTR|ERVL-MaLR|MSTA	+	chr12	24852049	24856446	STRG.117013.1	+	24852049	24856446	0.900000
body_of_pancreas_female_adult_53_years	chr22	37849302	37849333	37849321	-	High_confidence	9	11	34	2.464757	4.393062	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.970588
body_of_pancreas_female_adult_53_years	chr8	38825360	38825361	38825360	+	RAMPAGE_only	6	6	9	0.652436	2.750000	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.777778
body_of_pancreas_female_adult_53_years	chr6	31186398	31186399	31186398	-	High_confidence	23	23	34	2.464757	4.625000	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31183132	31186533	STRG.64562.6	-	31183132	31186533	0.941176
body_of_pancreas_female_adult_53_years	chr14	68882874	68882909	68882874	-	High_confidence	4	4	15	1.087393	3.235926	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.933333
body_of_pancreas_female_adult_53_years	chr10	116600931	116601017	116600931	+	RAMPAGE_only	20	22	67	4.857021	5.420531	chr10	116600920	116601006	SINE|MIR|MIR3	-	chr10	116594729	116609175	PNLIPRP1|ENST00000482833.1	+	116594729,116596213,116597827,116598046,116601071,116604029,116605385,116609052	116594864,116596322,116597947,116598166,116601201,116604138,116605553,116609175	0.776119
body_of_pancreas_female_adult_53_years	chr2	86482629	86482659	86482629	+	RAMPAGE_only	3	3	12	0.869914	3.095795	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86449813	86492712	STRG.21276.6	+	86449813,86451102,86455084,86456441,86456804,86456982,86464052,86466371,86470203,86474775,86477876,86478169,86478607,86481929,86484941,86485728,86489317,86489519,86490880,86491140,86492038	86449962,86451213,86455187,86456566,86456877,86457071,86464216,86466883,86470408,86474990,86478029,86478265,86480362,86484158,86485029,86485859,86489437,86489659,86491057,86491275,86492712	0.916667
body_of_pancreas_female_adult_53_years	chr7	107580245	107580267	107580264	+	High_confidence	141	141	703	50.962477	6.965123	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.933144
body_of_pancreas_female_adult_53_years	chr12	16382843	16382874	16382873	+	High_confidence	9	9	32	2.319771	4.288910	chr12	16377145	16383292	LINE|L1|L1PA4	-	chr12	16382826	16438761	MGST1|ENST00000359720.3	+	16382826,16437387	16383604,16438761	0.906250
body_of_pancreas_female_adult_53_years	chr6	2990740	2990755	2990740	-	RAMPAGE_only	5	5	14	1.014900	3.182006	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	1.000000
body_of_pancreas_female_adult_53_years	chr15	80059915	80059919	80059918	+	High_confidence	34	43	82	5.944414	5.041360	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.951220
body_of_pancreas_female_adult_53_years	chr6	113873326	113873347	113873342	-	High_confidence	6	6	25	1.812321	3.729446	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.880000
body_of_pancreas_female_adult_53_years	chr4	141333565	141333592	141333575	+	RAMPAGE_only	5	8	20	1.449857	3.616349	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141636595	141733987	IL15|NM_172175.2	+	141636595,141656185,141688821,141719377,141720468,141721058,141721923,141727939,141729846,141732737	141636748,141656307,141689035,141719476,141720566,141721177,141722008,141727984,141729984,141733987	0.500000
body_of_pancreas_female_adult_53_years	chr18	46087018	46087066	46087065	-	High_confidence	4	4	20	1.449857	3.884184	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.850000
body_of_pancreas_female_adult_53_years	chr4	185620116	185620127	185620123	-	RAMPAGE_only	3	3	12	0.869914	3.095795	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.666667
body_of_pancreas_female_adult_53_years	chr10	121838171	121838184	121838171	-	High_confidence	23	23	47	3.407164	4.985336	chr10	121837900	121838385	LINE|L2|L2	+	chr10	121740435	121838170	STRG.105418.4	-	121740435,121790168,121836717,121837929	121743858,121790289,121836817,121838170	0.765957
body_of_pancreas_female_adult_53_years	chr17	70106480	70106517	70106480	+	RAMPAGE_only	3	3	9	0.652436	2.503258	chr17	70106432	70106486	SINE|MIR|MIRc	-	chr17	70104999	70132194	KCNJ16|ENST00000587892.1	+	70104999,70108300,70130878,70131352,70131994	70105075,70108381,70130975,70131480,70132194	0.777778
body_of_pancreas_female_adult_53_years	chr11	123060124	123060229	123060168	-	High_confidence	21	22	182	13.193700	5.276960	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.615385
body_of_pancreas_female_adult_53_years	chr1	119800060	119800061	119800060	-	RAMPAGE_only	13	13	13	0.942407	3.085055	chr1	119800050	119800224	SINE|MIR|MIRc	+	chr1	119794412	119808805	REG4|ENST00000530654.1	-	119794412,119799724,119803067,119808702	119794685,119799862,119803165,119808805	0.769231
body_of_pancreas_female_adult_53_years	chr16	20326913	20326950	20326949	-	High_confidence	8	8	37	2.682236	4.756619	chr16	20326885	20326958	LINE|L2|L2b	+	chr16	20323966	20326912	GP2|ENST00000575449.1	-	20323966,20326337,20326760	20324256,20326467,20326912	0.513514
body_of_pancreas_female_adult_53_years	chr8	80485592	80485617	80485592	+	High_confidence	3	3	11	0.797421	3.277613	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.818182
body_of_pancreas_female_adult_53_years	chr4	86453184	86453203	86453202	-	High_confidence	5	5	20	1.449857	3.721612	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.800000
body_of_pancreas_female_adult_53_years	chrX	39774153	39774177	39774176	+	High_confidence	12	14	44	3.189686	5.232159	chrX	39774140	39775059	DNA|hAT-Tip100|MER45B	+	chrX	39774160	39774693	STRG.168273.1	+	39774160	39774693	0.772727
body_of_pancreas_female_adult_53_years	chr12	110440313	110440374	110440313	-	RAMPAGE_only	3	3	15	1.087393	3.521641	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.933333
body_of_pancreas_female_adult_53_years	chr12	12927723	12927741	12927733	+	High_confidence	67	68	139	10.076507	6.758781	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.517986
body_of_pancreas_female_adult_53_years	chr7	155243794	155243819	155243794	-	RAMPAGE_only	2	2	7	0.507450	2.584963	chr7	155243674	155244187	LTR|ERVK|MER9a1	-	chr7	155238270	155254133	STRG.82058.2	-	155238270,155239490	155238833,155254133	0.714286
body_of_pancreas_female_adult_53_years	chr4	68881079	68881080	68881079	-	High_confidence	269	340	360	26.097428	5.883509	chr4	68880689	68881286	LTR|ERV1|LTR1A2	-	chr4	68880485	68880767	STRG.45926.1	-	68880485	68880767	0.577778
body_of_pancreas_female_adult_53_years	chr15	88635654	88635661	88635660	+	High_confidence	10	10	22	1.594843	3.784942	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.818182
body_of_pancreas_female_adult_53_years	chr17	59620043	59620049	59620043	+	High_confidence	4	5	10	0.724929	2.947703	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.800000
body_of_pancreas_female_adult_53_years	chr7	64999443	64999444	64999443	-	High_confidence	19	19	20	1.449857	4.037401	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64974451	65000413	STRG.75764.1	-	64974451,64981386,64981983,64989946,64999120	64979536,64981482,64982116,64993414,65000413	0.600000
body_of_pancreas_female_adult_53_years	chr11	17282810	17282814	17282810	+	RAMPAGE_only	4	4	10	0.724929	2.721928	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.700000
body_of_pancreas_female_adult_53_years	chrX	94495315	94495324	94495319	+	High_confidence	14	18	34	2.464757	4.513646	chrX	94493111	94495855	LTR|ERVK|HERVK22-int	+	chrX	94495331	94498350	STRG.171343.1	+	94495331,94497857	94495539,94498350	0.970588
body_of_pancreas_female_adult_53_years	chr17	47067498	47067518	47067498	-	High_confidence	89	96	419	30.374506	5.809883	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.916468
body_of_pancreas_female_adult_53_years	chr22	26523820	26523821	26523820	-	RAMPAGE_only	6	6	9	0.652436	2.947703	chr22	26523573	26523882	SINE|Alu|AluSx	-	chr22	26521982	26590163	TPST2|ENST00000338754.8	-	26521982,26528213,26532694,26536287,26540788,26544603,26590052	26526267,26528262,26532745,26536486,26541718,26544675,26590163	1.000000
body_of_pancreas_female_adult_53_years	chr15	89804981	89804982	89804981	-	High_confidence	10	13	13	0.942407	3.085055	chr15	89804868	89804982	SINE|MIR|MIRb	-	chr15	89803984	89804851	ANPEP|ENST00000559887.1	-	89803984,89804252,89804490	89804002,89804407,89804851	0.692308
body_of_pancreas_female_adult_53_years	chr19	44719456	44719457	44719456	-	High_confidence	7	7	10	0.724929	3.121928	chr19	44719365	44719654	LINE|L2|L2a	+	chr19	44632198	44718631	AC243964.2|ENST00000590796.1	-	44632198,44699083,44715949,44718449	44632619,44699177,44716081,44718631	0.900000
body_of_pancreas_female_adult_53_years	chr7	7566514	7566538	7566514	-	High_confidence	60	68	295	21.385392	6.839126	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7552461	7566996	AC004982.2|ENST00000609497.5	-	7552461,7555155,7565913	7552922,7555189,7566996	0.898305
body_of_pancreas_female_adult_53_years	chr16	82056440	82056442	82056441	+	High_confidence	3	5	8	0.579943	2.807355	chr16	82056434	82056642	LINE|L1|L1ME3A	+	chr16	82056452	82098341	HSD17B2|ENST00000568090.5	+	82056452,82068169,82070941,82090901,82098074	82056513,82068382,82071127,82091039,82098341	0.500000
body_of_pancreas_female_adult_53_years	chr2	36513756	36513757	36513756	+	High_confidence	7	7	10	0.724929	2.921928	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.800000
body_of_pancreas_female_adult_53_years	chr5	9409590	9409615	9409614	-	RAMPAGE_only	14	14	26	1.884814	4.257756	chr5	9409587	9409722	SINE|MIR|MIR1_Amn	+	chr5	9202123	9380201	SEMA5A|ENST00000513968.4	-	9202123,9224673,9226868,9237827,9318371,9337712,9379822,9380106	9202240,9224887,9226967,9237890,9318417,9337812,9380023,9380201	0.846154
body_of_pancreas_female_adult_53_years	chr8	116648828	116648900	116648847	-	RAMPAGE_only	3	3	16	1.159886	2.973557	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.937500
body_of_pancreas_female_adult_53_years	chr10	110883946	110884044	110884012	+	RAMPAGE_only	9	9	66	4.784528	4.814341	chr10	110883998	110884271	DNA|TcMar-Tigger|Tigger7	+	chr10	110871954	110885339	STRG.104802.12	+	110871954,110883002	110881535,110885339	0.924242
body_of_pancreas_female_adult_53_years	chr11	123061191	123061276	123061256	-	High_confidence	152	161	397	28.779663	5.876815	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.959698
body_of_pancreas_female_adult_53_years	chr18	80148048	80148049	80148048	+	High_confidence	30	30	33	2.392264	4.513795	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.727273
body_of_pancreas_female_adult_53_years	chr7	100035471	100035502	100035501	+	RAMPAGE_only	3	3	9	0.652436	2.503258	chr7	100035147	100035840	LINE|RTE-BovB|MamRTE1	+	chr7	100023407	100041688	ZKSCAN1|ENST00000620510.1	+	100023407,100023551,100024153,100029860,100030248,100033304	100023461,100023932,100024307,100029952,100030375,100041688	1.000000
body_of_pancreas_female_adult_53_years	chr3	135965682	135965758	135965748	+	High_confidence	7	7	68	4.929514	4.997977	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.985294
body_of_pancreas_female_adult_53_years	chr10	116600879	116600880	116600879	+	RAMPAGE_only	7	7	11	0.797421	2.913977	chr10	116600822	116600909	DNA|hAT-Charlie|MER5B	-	chr10	116594729	116609175	PNLIPRP1|ENST00000482833.1	+	116594729,116596213,116597827,116598046,116601071,116604029,116605385,116609052	116594864,116596322,116597947,116598166,116601201,116604138,116605553,116609175	0.818182
body_of_pancreas_female_adult_53_years	chr17	50476652	50476698	50476652	-	High_confidence	15	17	50	3.624643	4.916566	chr17	50476465	50476629	SINE|MIR|MIRb	-	chr17	50475496	50476687	STRG.148934.3	-	50475496,50476170,50476314	50476098,50476290,50476687	0.840000
body_of_pancreas_female_adult_53_years	chr6	31186084	31186135	31186117	-	High_confidence	43	47	118	8.554157	5.683171	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31183132	31186533	STRG.64562.6	-	31183132	31186533	0.923729
body_of_pancreas_female_adult_53_years	chr3	136625270	136625271	136625270	-	RAMPAGE_only	47	48	62	4.494557	5.258286	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.870968
body_of_pancreas_female_adult_53_years	chr11	106176978	106176999	106176978	+	High_confidence	4	4	8	0.579943	2.521641	chr11	106176827	106177612	LTR|ERV1|LTR1A2	+	chr11	106177063	106587442	STRG.112833.1	+	106177063,106348261,106369189,106409142,106532684,106585927	106177330,106348324,106369256,106409188,106532815,106587442	0.625000
body_of_pancreas_female_adult_53_years	chr22	18149848	18149869	18149868	+	High_confidence	21	21	34	2.464757	3.056326	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.705882
body_of_pancreas_female_adult_53_years	chr17	59892716	59892724	59892716	-	High_confidence	4	4	9	0.652436	3.000000	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.666667
body_of_pancreas_female_adult_53_years	chr11	65440660	65440882	65440781	+	RAMPAGE_only	33	33	223	16.165907	5.541141	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
body_of_pancreas_female_adult_53_years	chr4	81154211	81154222	81154211	-	High_confidence	9	11	26	1.884814	3.532573	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	1.000000
body_of_pancreas_female_adult_53_years	chr12	4020819	4020890	4020826	+	High_confidence	7	8	52	3.769628	4.684373	chr12	4018993	4021963	LTR|ERV1|HERVH-int	+	chr12	4020976	4026658	AC007207.2|ENST00000543206.1	+	4020976,4026221	4021081,4026658	0.711538
body_of_pancreas_female_adult_53_years	chr9	89479889	89479890	89479889	-	High_confidence	13	13	14	1.014900	3.026987	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89402924	89479890	SEMA4D|ENST00000540475.5	-	89402924,89405350,89455887,89479571	89403016,89405699,89455953,89479890	0.857143
body_of_pancreas_female_adult_53_years	chr11	64242486	64242547	64242546	+	High_confidence	13	13	42	3.044700	4.716972	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.976190
body_of_pancreas_female_adult_53_years	chr1	89272843	89272883	89272843	-	High_confidence	7	7	54	3.914614	4.708048	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.925926
body_of_pancreas_female_adult_53_years	chr6	77369134	77369167	77369144	-	RAMPAGE_only	9	9	42	3.044700	4.643875	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77211924	77273309	STRG.66896.1	-	77211924,77271339,77273026	77212053,77271493,77273309	0.666667
body_of_pancreas_female_adult_53_years	chr19	9140393	9140428	9140427	+	High_confidence	16	17	55	3.987107	5.171373	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.600000
body_of_pancreas_female_adult_53_years	chr9	33796024	33796025	33796024	-	High_confidence	15	15	15	1.087393	3.506891	chr9	33795952	33796109	DNA|hAT-Charlie|MER5B	-	chr9	33792110	33796064	STRG.92289.1	-	33792110	33796064	0.866667
body_of_pancreas_female_adult_53_years	chr19	48753676	48753677	48753676	-	High_confidence	19	20	20	1.449857	4.142664	chr19	48753519	48753902	LTR|ERVK|LTR13A	-	chr19	48748010	48753660	FUT1|ENST00000645652.1	-	48748010,48752489,48752891,48753324,48753647	48751283,48752725,48753122,48753563,48753660	0.900000
body_of_pancreas_female_adult_53_years	chr5	137316019	137316025	137316024	-	High_confidence	13	14	20	1.449857	3.826875	chr5	137316016	137316339	LTR|ERVL-MaLR|MLT1A0	-	chr5	137112491	137316013	STRG.59389.6	-	137112491,137140579,137267009,137315513	137112561,137140694,137267055,137316013	0.650000
body_of_pancreas_female_adult_53_years	chr1	1655395	1655410	1655409	-	RAMPAGE_only	13	15	24	1.739829	4.277613	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.666667
body_of_pancreas_female_adult_53_years	chr11	72758552	72758604	72758552	-	High_confidence	10	12	32	2.319771	3.974695	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754862	72757939	STARD10|ENST00000543089.1	-	72754862,72755700,72757766	72755142,72755753,72757939	0.562500
body_of_pancreas_female_adult_53_years	chr12	24852104	24852107	24852104	+	High_confidence	23	28	42	3.044700	4.953056	chr12	24851932	24852292	LTR|ERVL-MaLR|MSTA	+	chr12	24852049	24856446	STRG.117013.1	+	24852049	24856446	0.880952
body_of_pancreas_female_adult_53_years	chr17	6853899	6853934	6853928	+	High_confidence	8	8	28	2.029800	4.162295	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853940	6895482	ALOX12P2|ENST00000574271.5	+	6853940,6854213,6892002,6894317,6894883,6895095,6895342	6854060,6854435,6892075,6894519,6895006,6895199,6895482	0.642857
body_of_pancreas_female_adult_53_years	chr2	233012610	233012631	233012610	+	High_confidence	2	2	7	0.507450	2.521641	chr2	233012609	233012781	DNA|hAT-Tip100|MER45A	+	chr2	233012613	233015885	AC106876.1|ENST00000409905.1	+	233012613,233013139,233015706	233012969,233013247,233015885	1.000000
body_of_pancreas_female_adult_53_years	chr11	58578123	58578145	58578132	-	High_confidence	9	15	44	3.189686	4.880180	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.590909
body_of_pancreas_female_adult_53_years	chr7	6054548	6054563	6054548	-	RAMPAGE_only	4	4	10	0.724929	2.641604	chr7	6054207	6054503	SINE|Alu|AluSx1	-	chr7	6046722	6059056	EIF2AK1|ENST00000463213.5	-	6046722,6048806,6049911,6054545,6058965	6047091,6048844,6050045,6054704,6059056	0.600000
body_of_pancreas_female_adult_53_years	chr12	4020966	4020985	4020966	+	High_confidence	3	3	16	1.159886	3.640224	chr12	4018993	4021963	LTR|ERV1|HERVH-int	+	chr12	4020976	4026658	AC007207.2|ENST00000543206.1	+	4020976,4026221	4021081,4026658	0.562500
body_of_pancreas_female_adult_53_years	chr16	20674647	20674648	20674647	+	High_confidence	9	9	13	0.942407	3.418296	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.615385
body_of_pancreas_female_adult_53_years	chr7	97973333	97973335	97973333	-	High_confidence	6	8	10	0.724929	2.641604	chr7	97973175	97973663	LTR|ERV1|MER51E	-	chr7	97966376	97973325	STRG.78351.12	-	97966376,97969769,97970133,97973091	97969052,97969845,97970730,97973325	0.700000
body_of_pancreas_female_adult_53_years	chr20	47397242	47397317	47397242	-	High_confidence	7	8	48	3.479657	4.807367	chr20	47397231	47397385	LTR|ERVL-MaLR|MLT1J	-	chr20	47382550	47397307	STRG.161755.1	-	47382550,47397148	47385019,47397307	0.812500
body_of_pancreas_female_adult_53_years	chr8	17895504	17895521	17895504	-	High_confidence	1010	1036	3502	253.869977	7.912382	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.940605
body_of_pancreas_female_adult_53_years	chr16	75306448	75306460	75306448	-	High_confidence	20	21	45	3.262178	4.234480	chr16	75306282	75306398	LINE|CR1|L3	-	chr16	75293697	75306545	CFDP1|ENST00000570103.5	-	75293697,75305023,75306386	75294042,75305182,75306545	0.933333
body_of_pancreas_female_adult_53_years	chr9	127531669	127531737	127531669	-	RAMPAGE_only	3	3	16	1.159886	3.500000	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.750000
body_of_pancreas_female_adult_53_years	chr15	89999179	89999180	89999179	+	High_confidence	4	4	7	0.507450	2.521641	chr15	89998992	89999393	LINE|L2|L2c	+	chr15	89999065	90077366	STRG.139777.3	+	89999065,90067109,90073070,90074115	89999360,90068595,90073262,90077366	0.714286
body_of_pancreas_female_adult_53_years	chr12	132437312	132437324	132437320	-	High_confidence	8	8	30	2.174786	4.137538	chr12	132437064	132437307	LTR|ERVL-MaLR|MLT1A1	-	chr12	132430943	132437488	STRG.122899.1	-	132430943,132433762,132437094	132432171,132436103,132437488	0.766667
body_of_pancreas_female_adult_53_years	chrX	16712869	16712892	16712889	-	High_confidence	2	2	9	0.652436	3.000000	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.777778
body_of_pancreas_female_adult_53_years	chr19	3062917	3062925	3062917	-	High_confidence	2	2	10	0.724929	2.947703	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.900000
body_of_pancreas_female_adult_53_years	chr4	185620068	185620093	185620092	-	RAMPAGE_only	4	4	8	0.579943	2.750000	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.625000
body_of_pancreas_female_adult_53_years	chr2	159428333	159428357	159428356	-	RAMPAGE_only	6	6	12	0.869914	3.277613	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.583333
body_of_pancreas_female_adult_53_years	chr2	208353336	208353402	208353336	+	High_confidence	104	106	331	23.995135	6.314812	chr2	208353158	208353396	DNA|hAT-Charlie|Charlie10a	+	chr2	208353346	208358733	STRG.28712.4	+	208353346,208354570,208355189	208354159,208354645,208358733	0.972810
body_of_pancreas_female_adult_53_years	chr8	51973605	51973621	51973620	+	RAMPAGE_only	17	18	31	2.247278	4.625054	chr8	51973413	51973909	LINE|L1|L1M4	-	chr8	51961457	52022974	AC064807.2|ENST00000521188.1	+	51961457,52022415	51961570,52022974	0.870968
body_of_pancreas_female_adult_53_years	chr3	30614627	30614635	30614634	+	RAMPAGE_only	3	3	11	0.797421	3.277613	chr3	30614618	30614848	SINE|MIR|MIR	-	chr3	30606600	30694142	TGFBR2|ENST00000359013.4	+	30606600,30623198,30644746,30650269,30671637,30674104,30688383,30691419	30606977,30623273,30644915,30650460,30672437,30674246,30688511,30694142	0.727273
body_of_pancreas_female_adult_53_years	chr14	100569561	100569605	100569561	-	High_confidence	4	8	26	1.884814	4.022055	chr14	100569527	100569624	LINE|L2|L2b	+	chr14	100538887	100569558	BEGAIN|ENST00000556188.5	-	100538887,100540495,100543857,100544999,100546500,100567910,100569426	100539315,100540579,100543965,100545066,100546662,100567939,100569558	0.730769
body_of_pancreas_female_adult_53_years	chr1	200411799	200411814	200411799	+	High_confidence	35	36	55	3.987107	5.117269	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200412010	200412560	STRG.11775.1	+	200412010	200412560	0.527273
body_of_pancreas_female_adult_53_years	chr16	20676160	20676202	20676160	-	High_confidence	9	16	31	2.247278	4.256565	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.838710
body_of_pancreas_female_adult_53_years	chr1	28983857	28983880	28983874	+	RAMPAGE_only	3	3	11	0.797421	2.921928	chr1	28983513	28984367	LTR|ERV1|LTR1D	-	chr1	28987497	29072224	EPB41|ENST00000645111.1	+	28987497,28993329,29011864,29015691,29018223,29030399,29033092,29035825,29039253,29053103,29058588,29058810,29060421,29064981,29068732,29070363	28987905,28993542,29011907,29015767,29018442,29030487,29033245,29035923,29039426,29053312,29058645,29058852,29060484,29065158,29068768,29072224	0.636364
body_of_pancreas_female_adult_53_years	chr14	81170402	81170431	81170413	-	High_confidence	12	19	62	4.494557	5.067964	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.822581
body_of_pancreas_female_adult_53_years	chr10	42654643	42654679	42654643	-	RAMPAGE_only	4	4	27	1.957307	4.623517	chr10	42654446	42654969	LTR|ERV1|HERV1_LTRa	+	chr10	42589083	42638837	ZNF33B|NM_001305040.1	-	42589083,42613887,42614281,42631928,42632294,42636919,42638473	42594699,42613968,42614358,42632024,42632439,42636972,42638837	0.592593
body_of_pancreas_female_adult_53_years	chr8	102929960	102930019	102929989	+	High_confidence	11	11	50	3.624643	5.109508	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.760000
body_of_pancreas_female_adult_53_years	chr10	65570509	65570540	65570517	+	High_confidence	8	10	37	2.682236	4.625213	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570874	65615757	LINC01515|ENST00000593568.1	+	65570874,65572934,65585484,65615635	65571579,65573056,65585567,65615757	0.621622
body_of_pancreas_female_adult_53_years	chr1	116390239	116390303	116390239	+	RAMPAGE_only	7	7	40	2.899714	4.491220	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116387302	116404772	STRG.8305.5	+	116387302,116388130,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116387491,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404772	0.900000
body_of_pancreas_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	27	28	28	2.029800	3.958229	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.678571
body_of_pancreas_female_adult_53_years	chr11	67848678	67848702	67848701	-	High_confidence	12	12	49	3.552150	4.852045	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67846771	67847872	STRG.110350.1	-	67846771	67847872	0.836735
body_of_pancreas_female_adult_53_years	chr1	153967486	153967512	153967511	+	High_confidence	10	10	28	2.029800	3.869331	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.857143
body_of_pancreas_female_adult_53_years	chrX	73837450	73837465	73837450	-	RAMPAGE_only	8	9	15	1.087393	3.235926	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.933333
body_of_pancreas_female_adult_53_years	chr6	28354041	28354077	28354041	-	High_confidence	8	9	26	1.884814	4.103910	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28349516	28354220	STRG.64327.4	-	28349516,28354130	28353952,28354220	0.961538
body_of_pancreas_female_adult_53_years	chr4	152412516	152412529	152412528	-	High_confidence	4	4	9	0.652436	3.169925	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
body_of_pancreas_female_adult_53_years	chr11	46274422	46274429	46274422	-	High_confidence	7	7	26	1.884814	3.668296	chr11	46274366	46274400	SINE|MIR|MIR1_Amn	-	chr11	46256354	46274547	LINC02489|ENST00000527239.1	-	46256354,46274380	46256541,46274547	0.884615
body_of_pancreas_female_adult_53_years	chr4	130850440	130850481	130850476	+	High_confidence	46	50	88	6.379371	5.893813	chr4	130850413	130851223	LTR|ERV1|LTR38-int	+	chr4	130850440	130852722	STRG.49170.1	+	130850440	130852722	0.545455
body_of_pancreas_female_adult_53_years	chr21	42955784	42955807	42955786	-	High_confidence	8	12	26	1.884814	4.103465	chr21	42955408	42955905	LTR|ERV1|HERVE-int	-	chr21	42955185	42955795	STRG.164463.1	-	42955185,42955689	42955584,42955795	0.923077
body_of_pancreas_female_adult_53_years	chr7	142772554	142772584	142772554	+	High_confidence	10	10	30	2.174786	4.506891	chr7	142772494	142772559	DNA|hAT-Charlie|MER5B	-	chr7	142772158	142774557	PRSS2|ENST00000618750.2	+	142772158,142773265,142773918,142774355	142772208,142773519,142774038,142774557	0.566667
body_of_pancreas_female_adult_53_years	chr19	34860643	34860646	34860643	-	High_confidence	4	4	11	0.797421	3.095795	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.545455
body_of_pancreas_female_adult_53_years	chr1	103576966	103577117	103576966	+	High_confidence	58	61	224	16.238399	5.398555	chr1	103576953	103577226	SINE|Alu|AluJo	+	chr1	103577386	103579534	AMY2B|ENST00000481821.1	+	103577386,103579310	103577845,103579534	0.843750
body_of_pancreas_female_adult_53_years	chr12	16353884	16353885	16353884	+	High_confidence	23	23	26	1.884814	3.323074	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.653846
body_of_pancreas_female_adult_53_years	chr8	144106356	144106369	144106356	+	High_confidence	2	4	9	0.652436	2.750000	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.777778
body_of_pancreas_female_adult_53_years	chr15	89462830	89462831	89462830	+	High_confidence	11	13	13	0.942407	3.238901	chr15	89462544	89462974	LTR|ERV1|MER51A	+	chr15	89462840	89464124	STRG.139750.1	+	89462840	89464124	0.692308
body_of_pancreas_female_adult_53_years	chr6	79631273	79631329	79631302	+	High_confidence	56	57	231	16.745849	6.397028	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.974026
body_of_pancreas_female_adult_53_years	chr7	130385587	130385621	130385587	+	RAMPAGE_only	3	3	15	1.087393	3.182006	chr7	130385511	130385592	SINE|MIR|MIR	-	chr7	130383783	130388107	CPA1|ENST00000479106.1	+	130383783,130385838,130387823	130385345,130385923,130388107	0.533333
body_of_pancreas_female_adult_53_years	chr17	358994	358998	358997	-	RAMPAGE_only	5	6	11	0.797421	3.095795	chr17	358953	359053	DNA|hAT-Charlie|MER117	+	chr17	212501	353097	RPH3AL|ENST00000323434.12	-	212501,215653,219622,247110,319419,321271,327466,333758,352711	213923,215802,219736,247285,319549,321415,327579,333934,353097	0.545455
body_of_pancreas_female_adult_53_years	chr7	103353956	103353957	103353956	+	High_confidence	12	12	12	0.869914	2.584963	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.833333
body_of_pancreas_female_adult_53_years	chr7	104926544	104926545	104926544	-	High_confidence	7	7	7	0.507450	2.521641	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104911915	104926630	LHFPL3-AS2|ENST00000453666.2	-	104911915,104915705,104917559,104920384,104926452	104912076,104915827,104917980,104920425,104926630	0.714286
body_of_pancreas_female_adult_53_years	chr19	8839656	8839670	8839669	+	RAMPAGE_only	4	4	10	0.724929	2.947703	chr19	8839589	8839920	LINE|L2|L2a	-	chr19	8842592	8843340	MBD3L1|NM_145208.2	+	8842592	8843340	0.900000
body_of_pancreas_female_adult_53_years	chr1	231422748	231422749	231422748	-	High_confidence	16	17	19	1.377364	3.572431	chr1	231422714	231422871	SINE|MIR|MIRb	-	chr1	231363750	231422303	STRG.14184.2	-	231363750,231370561,231373979,231420997	231366475,231370698,231374099,231422303	0.684211
body_of_pancreas_female_adult_53_years	chr2	213923806	213923807	213923806	+	RAMPAGE_only	9	9	13	0.942407	3.085055	chr2	213921220	213924593	LINE|L1|L1PA14	-	chr2	213284388	214410501	SPAG16|ENST00000406979.6	+	213284388,213285885,213296039,213297021,213297261,213310058,213317218,213340162,213350527,213364075,213375009,213489962,213862484,213929959,214013950,214108195,214149139,214410139	213284619,213285918,213296110,213297139,213297357,213310177,213317356,213340270,213350645,213364145,213375119,213490090,213862628,213930145,214014077,214108261,214149266,214410501	0.538462
body_of_pancreas_female_adult_53_years	chr7	112458998	112459019	112459018	+	RAMPAGE_only	5	5	9	0.652436	2.500000	chr7	112459064	112459233	SINE|Alu|AluJo	+	chr7	112450466	112462122	STRG.79861.2	+	112450466,112455762,112456001,112456913,112458860,112462000	112450782,112455867,112456086,112457038,112461916,112462122	0.666667
body_of_pancreas_female_adult_53_years	chr5	66690173	66690223	66690222	+	RAMPAGE_only	9	9	38	2.754728	4.461320	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66759727	66930961	MAST4|ENST00000452953.5	+	66759727,66788669,66899950,66930746	66759862,66788794,66899982,66930961	0.605263
body_of_pancreas_female_adult_53_years	chr10	116625609	116625647	116625609	+	RAMPAGE_only	3	3	13	0.942407	3.180833	chr10	116625410	116625827	DNA|hAT-Charlie|Charlie4a	-	chr10	116621305	116645143	PNLIPRP2|ENST00000591655.3	+	116621305,116623944,116625945,116626863,116627762,116629942,116631237,116634840,116636784,116637127,116638373,116642114,116645033	116621354,116624099,116626071,116626998,116627874,116630062,116631357,116634959,116636914,116637132,116638480,116642282,116645143	0.846154
body_of_pancreas_female_adult_53_years	chr3	114759249	114759301	114759249	-	High_confidence	3	3	16	1.159886	3.875000	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114338651	114759271	ZBTB20|ENST00000471418.5	-	114338651,114350273,114380216,114389004,114500351,114693527,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114759271	0.500000
body_of_pancreas_female_adult_53_years	chr11	43881075	43881088	43881087	+	High_confidence	15	17	48	3.479657	5.155549	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.750000
body_of_pancreas_female_adult_53_years	chr15	57451517	57451576	57451575	+	RAMPAGE_only	11	14	54	3.914614	4.181319	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.981481
body_of_pancreas_female_adult_53_years	chr11	3477038	3477073	3477055	-	High_confidence	52	55	269	19.500578	6.329105	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3475725	3477126	STRG.106467.1	-	3475725,3476942	3476373,3477126	0.832714
body_of_pancreas_female_adult_53_years	chr17	60887054	60887071	60887054	+	High_confidence	2	2	9	0.652436	2.750000	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.666667
body_of_pancreas_female_adult_53_years	chr2	181954491	181954513	181954512	+	High_confidence	5	5	14	1.014900	3.235926	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954530	182117685	PPP1R1C|ENST00000490645.5	+	181954530,181962133,181975218,182061441,182063730,182117206	181954634,181962196,181975264,182061479,182063791,182117685	0.928571
body_of_pancreas_female_adult_53_years	chr17	50476554	50476574	50476573	-	High_confidence	5	5	11	0.797421	2.721928	chr17	50476465	50476629	SINE|MIR|MIRb	-	chr17	50464552	50476687	STRG.148934.1	-	50464552,50465293,50465706,50468039,50470972,50476386	50465049,50465439,50465870,50470034,50471085,50476687	0.636364
body_of_pancreas_female_adult_53_years	chr9	39809827	39809859	39809858	-	High_confidence	5	5	13	0.942407	3.418296	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39802812	39810013	STRG.92798.4	-	39802812,39809485	39803859,39810013	0.692308
body_of_pancreas_female_adult_53_years	chr6	31186530	31186568	31186567	-	High_confidence	19	20	56	4.059600	4.910918	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31183132	31186533	STRG.64562.6	-	31183132	31186533	0.982143
body_of_pancreas_female_adult_53_years	chr10	116553478	116553523	116553520	+	RAMPAGE_only	15	18	92	6.669343	5.426810	chr10	116553404	116553688	DNA|TcMar-Tigger|Tigger3b	+	chr10	116545930	116567855	PNLIP|ENST00000369221.2	+	116545930,116546092,116547293,116548359,116551097,116553726,116555177,116555387,116555999,116559153,116560415,116561471,116567734	116545958,116546138,116547448,116548482,116551232,116553838,116555297,116555507,116556118,116559283,116560524,116561636,116567855	0.836957
body_of_pancreas_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	53	53	53	3.842121	4.116598	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
body_of_pancreas_female_adult_53_years	chr14	55671871	55671876	55671871	+	High_confidence	4	4	12	0.869914	3.251629	chr14	55671902	55672073	DNA|hAT-Charlie|MER5A	+	chr14	55671861	55674304	KTN1|ENST00000555506.1	+	55671861,55672629,55672928	55671877,55672701,55674304	0.500000
body_of_pancreas_female_adult_53_years	chr2	240685920	240685942	240685939	+	High_confidence	4	5	17	1.232379	3.750000	chr2	240685606	240686514	LTR|ERV1|MER49	-	chr2	240685948	240690397	STRG.30583.1	+	240685948,240686437,240687763,240688415,240688601,240689872	240686342,240687586,240687821,240688512,240688825,240690397	0.941176
body_of_pancreas_female_adult_53_years	chr2	67564635	67564646	67564635	-	RAMPAGE_only	2	2	8	0.579943	2.750000	chr2	67564630	67564673	LINE|L2|L2c	+	chr2	67555077	67825651	STRG.20356.1	-	67555077,67563781,67564427,67683951,67823873,67825488	67563029,67563915,67565644,67684077,67823979,67825651	0.625000
body_of_pancreas_female_adult_53_years	chr1	21987376	21987397	21987396	+	High_confidence	7	8	20	1.449857	3.115834	chr1	21987188	21987470	SINE|Alu|AluSg7	+	chr1	21987815	21987919	RNU6-1022P|ENST00000365049.1	+	21987815	21987919	0.550000
body_of_pancreas_female_adult_53_years	chr3	13327805	13327861	13327860	-	High_confidence	3	3	13	0.942407	3.180833	chr3	13327798	13327965	SINE|MIR|MIR	+	chr3	13316234	13328079	STRG.31979.5	-	13316234,13319071,13319229,13319762,13321584,13322192,13323308,13327216	13317781,13319155,13319325,13319979,13321835,13322339,13325931,13328079	1.000000
body_of_pancreas_female_adult_53_years	chr6	116590931	116590932	116590931	+	RAMPAGE_only	7	7	8	0.579943	2.807355	chr6	116590978	116591112	SINE|Alu|FLAM_C	+	chr6	116571488	116593588	RWDD1|ENST00000487832.6	+	116571488,116574057,116580294,116584726,116588841,116590271,116590887,116592979	116571655,116574171,116580360,116584857,116588985,116590404,116590950,116593588	0.750000
body_of_pancreas_female_adult_53_years	chr5	133089677	133089678	133089677	+	RAMPAGE_only	16	16	19	1.377364	3.614369	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.947368
body_of_pancreas_female_adult_53_years	chr19	20423687	20423704	20423687	-	RAMPAGE_only	3	5	16	1.159886	2.789898	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.812500
body_of_pancreas_female_adult_53_years	chr9	129489063	129489154	129489120	+	High_confidence	3	3	23	1.667336	4.088779	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.782609
body_of_pancreas_female_adult_53_years	chr18	7946875	7946888	7946878	+	High_confidence	46	46	104	7.539257	5.766112	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.682692
body_of_pancreas_female_adult_53_years	chr10	116600815	116600838	116600832	+	RAMPAGE_only	4	4	18	1.304871	3.690117	chr10	116600822	116600909	DNA|hAT-Charlie|MER5B	-	chr10	116594729	116609175	PNLIPRP1|ENST00000482833.1	+	116594729,116596213,116597827,116598046,116601071,116604029,116605385,116609052	116594864,116596322,116597947,116598166,116601201,116604138,116605553,116609175	0.833333
body_of_pancreas_female_adult_53_years	chr12	24862290	24862325	24862324	-	RAMPAGE_only	9	9	39	2.827221	4.662015	chr12	24862308	24862762	LTR|ERV1|MER72	+	chr12	24814802	24902296	BCAT1|ENST00000538118.5	-	24814802,24829822,24832722,24836510,24842081,24849785,24878529,24881300,24894274,24901813,24901962	24818049,24829897,24832863,24836596,24842224,24849949,24878649,24881411,24894475,24901885,24902296	0.846154
body_of_pancreas_female_adult_53_years	chr11	57771286	57771287	57771286	+	RAMPAGE_only	14	15	20	1.449857	3.884184	chr11	57771192	57771540	LINE|L2|L2a	-	chr11	57761800	57808535	STRG.109451.27	+	57761800,57791491,57795576,57796456,57801732,57803620,57804662,57805881,57806914,57808164,57808389	57789155,57794081,57795729,57796992,57802196,57803804,57804780,57806035,57806983,57808292,57808535	1.000000
body_of_pancreas_female_adult_53_years	chr7	152082458	152082469	152082458	+	RAMPAGE_only	3	3	13	0.942407	3.392747	chr7	152082186	152082768	LTR|ERV1|LTR10C	-	chr7	152079274	152104891	GALNT11|ENST00000422997.6	+	152079274,152094189,152100797,152103111	152079408,152094522,152100921,152104891	0.692308
body_of_pancreas_female_adult_53_years	chr22	49925449	49925454	49925453	+	RAMPAGE_only	3	4	7	0.507450	2.807355	chr22	49925493	49925572	LINE|CR1|L3b	+	chr22	49923209	49927528	CRELD2|ENST00000487969.1	+	49923209,49927254	49925557,49927528	1.000000
body_of_pancreas_female_adult_53_years	chr14	92025779	92025798	92025779	-	RAMPAGE_only	3	4	8	0.579943	2.500000	chr14	92025601	92025895	SINE|Alu|AluSc	+	chr14	91965990	92040059	TRIP11|NM_001321851.1	-	91965990,91972716,91974626,91975171,91976107,91988283,91993808,91995351,91999239,91999967,92003418,92007639,92010985,92011754,92014214,92015695,92017681,92021555,92025309,92033191,92039546	91969893,91972861,91974743,91975286,91976189,91988383,91993912,91995515,91999433,92000108,92006448,92007852,92011072,92011795,92014577,92015861,92017750,92021831,92025420,92033250,92040059	0.625000
body_of_pancreas_female_adult_53_years	chr9	127642418	127642455	127642428	+	High_confidence	16	16	81	5.871921	5.420560	chr9	127642433	127642559	LINE|CR1|L3	+	chr9	127642342	127663258	STXBP1|ENST00000626333.1	+	127642342,127651602,127653714,127658374,127660029,127661101,127663204	127642563,127651652,127653796,127658451,127660108,127661205,127663258	0.716049
body_of_pancreas_female_adult_53_years	chr4	79492592	79492616	79492615	+	High_confidence	4	4	13	0.942407	3.238901	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.923077
body_of_pancreas_female_adult_53_years	chr22	21687313	21687314	21687313	+	RAMPAGE_only	4	4	7	0.507450	2.521641	chr22	21687347	21687571	SINE|Alu|AluSx	+	chr22	21685672	21697901	PPIL2|ENST00000446951.1	+	21685672,21686482,21686891,21687642,21688072,21688731,21693815,21694592,21694754,21694936,21695393,21696884	21685726,21686558,21686998,21687732,21688106,21688849,21693872,21694665,21694817,21695070,21695496,21697901	0.857143
body_of_pancreas_female_adult_53_years	chr6	35796063	35796108	35796071	-	High_confidence	2	2	10	0.724929	2.947703	chr6	35796021	35796159	SINE|MIR|MIR3	+	chr6	35794981	35796850	CLPS|ENST00000622413.2	-	35794981,35795730,35796808	35795277,35795853,35796850	0.500000
body_of_pancreas_female_adult_53_years	chr8	102930138	102930183	102930182	+	High_confidence	20	21	143	10.366478	6.075547	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.867133
body_of_pancreas_female_adult_53_years	chrX	48589967	48590030	48590029	+	High_confidence	20	20	123	8.916621	6.115075	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48590041	48599682	STRG.168771.8	+	48590041,48597957,48599352,48599586	48590287,48598957,48599462,48599682	0.861789
body_of_pancreas_female_adult_53_years	chr2	164839342	164839361	164839342	+	RAMPAGE_only	3	3	15	1.087393	3.139572	chr2	164839310	164839440	SINE|Alu|AluJr	+	chr2	164840671	165094117	AC019197.1|ENST00000638199.1	+	164840671,164848841,164945583,164949934,164959254,164960898,165091119,165091829	164840822,164849402,164945671,164950133,164959329,164960967,165091299,165094117	0.933333
body_of_pancreas_female_adult_53_years	chr5	997312	997319	997318	-	High_confidence	7	7	20	1.449857	3.584184	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.750000
body_of_pancreas_female_adult_53_years	chr14	102235451	102235473	102235458	-	High_confidence	7	7	21	1.522350	3.031116	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.904762
body_of_pancreas_female_adult_53_years	chr11	287314	287315	287314	+	High_confidence	23	23	32	2.319771	4.615061	chr11	287048	287379	LINE|L2|L2a	-	chr11	288037	288987	AC136475.3|ENST00000534742.1	+	288037,288949	288811,288987	0.937500
body_of_pancreas_female_adult_53_years	chr2	200889279	200889294	200889293	-	High_confidence	4	4	8	0.579943	3.000000	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889276	PPIL3|ENST00000465823.5	-	200870955,200876918,200881420,200885697,200887612,200888955	200871521,200877037,200881488,200885772,200887685,200889276	0.500000
body_of_pancreas_female_adult_53_years	chrX	44225761	44225827	44225802	-	High_confidence	12	12	62	4.494557	4.244002	chrX	44225702	44225811	SINE|MIR|MIR3	-	chrX	44147881	44225756	EFHC2|ENST00000343571.3	-	44147881,44163921,44176291,44178366,44225684	44148896,44164027,44176384,44178564,44225756	1.000000
body_of_pancreas_female_adult_53_years	chr11	77175226	77175292	77175226	+	High_confidence	7	7	20	1.449857	3.471354	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175311	77192478	STRG.111156.1	+	77175311,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77184587,77189343,77190019,77190696,77192050,77192414	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77184715,77189470,77190139,77190870,77192278,77192478	0.950000
body_of_pancreas_female_adult_53_years	chr8	109581048	109581088	109581081	-	High_confidence	9	10	37	2.682236	4.764858	chr8	109580602	109581257	LINE|L2|L2c	+	chr8	109575974	109581058	SYBU|ENST00000527707.5	-	109575974,109577867,109579798,109580878	109576013,109578017,109580002,109581058	0.729730
body_of_pancreas_female_adult_53_years	chr15	45397343	45397385	45397384	-	High_confidence	5	5	25	1.812321	4.001629	chr15	45397083	45398013	LTR|ERVL|MER21C	+	chr15	45380499	45397346	GATM|ENST00000527933.2	-	45380499,45396166,45396921	45380559,45396253,45397346	0.960000
body_of_pancreas_female_adult_53_years	chr3	39407628	39407743	39407682	+	High_confidence	19	19	75	5.436964	5.398623	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.946667
body_of_pancreas_female_adult_53_years	chr1	77169312	77169313	77169312	-	RAMPAGE_only	5	5	8	0.579943	2.521641	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77088989	77219426	PIGK|ENST00000370812.7	-	77088989,77122274,77154448,77161294,77161593,77163845,77166718,77169259,77206639,77210435,77219309	77092490,77122359,77154621,77161405,77161711,77163942,77166830,77169395,77206731,77210489,77219426	0.875000
body_of_pancreas_female_adult_53_years	chr9	39810023	39810076	39810033	-	High_confidence	14	15	39	2.827221	4.563717	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39802812	39810013	STRG.92798.4	-	39802812,39809485	39803859,39810013	0.897436
body_of_pancreas_female_adult_53_years	chr19	51027667	51027697	51027667	-	High_confidence	16	17	42	3.044700	4.967308	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.690476
body_of_pancreas_female_adult_53_years	chr19	7642299	7642316	7642315	+	High_confidence	7	7	12	0.869914	3.459432	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.666667
body_of_pancreas_female_adult_53_years	chr2	208542669	208542722	208542699	+	High_confidence	5	5	29	2.102293	4.351823	chr2	208542564	208543130	LTR|ERVL|MLT2B3	-	chr2	208542641	208825587	LOC101927960|NR_136588.1	+	208542641,208572012,208656825,208819551,208824194,208825398	208542991,208572167,208656989,208819655,208824350,208825587	0.758621
body_of_pancreas_female_adult_53_years	chr5	83096128	83096153	83096152	+	RAMPAGE_only	10	16	23	1.667336	4.165894	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	0.826087
body_of_pancreas_female_adult_53_years	chr7	39855234	39855260	39855259	-	High_confidence	12	12	44	3.189686	4.362507	chr7	39855258	39855554	LINE|L1|L1MC1	-	chr7	39854493	39855056	RWDD4P2|ENST00000426392.1	-	39854493	39855056	0.522727
body_of_pancreas_female_adult_53_years	chr7	47571342	47571392	47571361	-	RAMPAGE_only	3	3	16	1.159886	3.589898	chr7	47571239	47571398	SINE|MIR|MIRb	-	chr7	47302966	47573858	STRG.75489.2	-	47302966,47304831,47344754,47344923,47346186,47368364,47396799,47400392,47400784,47411726,47413936,47415093,47424100,47428311,47435281,47437262,47439486,47442002,47470442,47481102,47506906,47529035,47573479	47303584,47305003,47344838,47345038,47346356,47369621,47396904,47400458,47400914,47411802,47413997,47415206,47424184,47428376,47435404,47437313,47439658,47442055,47473321,47481141,47506944,47529147,47573858	0.562500
body_of_pancreas_female_adult_53_years	chr3	139344537	139344548	139344547	+	High_confidence	5	5	13	0.942407	3.180833	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.769231
body_of_pancreas_female_adult_53_years	chr8	143558019	143558020	143558019	+	High_confidence	6	6	6	0.434957	2.584963	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.666667
body_of_pancreas_female_adult_53_years	chr7	6590246	6590275	6590251	+	High_confidence	8	8	23	1.667336	3.653997	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.739130
body_of_pancreas_female_adult_53_years	chr12	122064350	122064393	122064375	+	High_confidence	147	151	263	19.065621	6.394521	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122064264	122070155	STRG.122494.1	+	122064264,122067197	122067144,122070155	0.977186
body_of_pancreas_female_adult_53_years	chrX	7147267	7147288	7147281	+	High_confidence	5	5	19	1.377364	3.572431	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147273	7354234	STRG.167309.1	+	7147273,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7148083,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354234	0.947368
body_of_pancreas_female_adult_53_years	chr1	220032390	220032441	220032390	-	RAMPAGE_only	1	1	9	0.652436	2.750000	chr1	220032081	220032353	SINE|Alu|AluY	-	chr1	219987295	220046451	EPRS|ENST00000609181.5	-	219987295,219988589,219996982,220001137,220005247,220006105,220007201,220010945,220018125,220018448,220018994,220019987,220022346,220024263,220025131,220030385,220032386,220033501,220034913,220040184,220046342	219987404,219988823,219997342,220001255,220005360,220006313,220007338,220011056,220018146,220018508,220019079,220020221,220022518,220024456,220025258,220030480,220032526,220033658,220035013,220040269,220046451	0.888889
body_of_pancreas_female_adult_53_years	chr16	67664270	67664303	67664270	-	High_confidence	2	3	8	0.579943	2.500000	chr16	67664174	67664319	LINE|L2|L2b	+	chr16	67662945	67664512	ENKD1|ENST00000602942.5	-	67662945,67663419,67663656,67663936	67663321,67663556,67663820,67664512	0.875000
body_of_pancreas_female_adult_53_years	chr3	112119227	112119228	112119227	+	RAMPAGE_only	8	9	10	0.724929	2.921928	chr3	112119102	112119372	SINE|Alu|AluSq2	+	chr3	112086437	112150724	STRG.37681.4	+	112086437,112093359,112102837,112109542,112112963,112116641,112128232	112086545,112093489,112102965,112109613,112113145,112119562,112150724	1.000000
body_of_pancreas_female_adult_53_years	chr5	147831882	147831883	147831882	-	High_confidence	18	21	27	1.957307	3.950064	chr5	147831826	147831957	SINE|MIR|MIR3	+	chr5	147824567	147831786	SPINK1|ENST00000296695.9	-	147824567,147828021,147829598,147831522	147824706,147828128,147829630,147831786	0.962963
body_of_pancreas_female_adult_53_years	chr16	30445873	30445877	30445873	-	High_confidence	19	35	51	3.697136	4.930837	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.960784
body_of_pancreas_female_adult_53_years	chr10	103890256	103890286	103890256	-	RAMPAGE_only	5	5	19	1.377364	3.191612	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103917669	STN1|ENST00000369764.1	-	103882554,103889071,103892129,103897547,103898876,103900061,103905090,103910526,103917461	103882841,103889144,103892252,103897719,103899000,103900223,103905156,103910622,103917669	0.947368
body_of_pancreas_female_adult_53_years	chr2	227164620	227164621	227164620	+	High_confidence	8	8	9	0.652436	2.750000	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.777778
body_of_pancreas_female_adult_53_years	chr16	72627715	72627720	72627719	-	RAMPAGE_only	8	8	13	0.942407	3.084963	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.538462
body_of_pancreas_female_adult_53_years	chr3	37987977	37987990	37987989	+	High_confidence	7	7	23	1.667336	3.849224	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	1.000000
body_of_pancreas_female_adult_53_years	chr19	47259758	47259775	47259758	+	RAMPAGE_only	4	7	14	1.014900	3.182006	chr19	47259641	47260247	LINE|L2|L2a	-	chr19	47257539	47265182	STRG.157781.5	+	47257539,47258329,47258558,47260320,47260587,47264602,47264772	47257909,47258403,47258663,47260422,47260839,47264686,47265182	0.785714
body_of_pancreas_female_adult_53_years	chr2	232551105	232551106	232551105	+	High_confidence	7	7	10	0.724929	2.725481	chr2	232551133	232551224	SINE|MIR|MIRb	+	chr2	232550806	232567205	EIF4E2|ENST00000454501.1	+	232550806,232556415,232557883,232564246,232566828,232567077	232551218,232556530,232558018,232564351,232566981,232567205	0.900000
body_of_pancreas_female_adult_53_years	chr5	40981710	40981797	40981752	+	RAMPAGE_only	9	9	65	4.712036	5.045692	chr5	40981792	40981922	SINE|MIR|MIR3	+	chr5	40909496	40982939	C7|NM_000587.2	+	40909496,40928579,40931063,40934324,40936337,40937551,40945197,40947601,40949903,40955386,40958032,40959448,40962084,40964740,40972402,40976749,40979724,40981391	40909616,40928635,40931139,40934466,40936485,40937690,40945368,40947845,40950014,40955553,40958261,40959620,40962172,40964873,40972594,40976840,40979909,40982939	1.000000
body_of_pancreas_female_adult_53_years	chr3	69237179	69237186	69237179	-	RAMPAGE_only	5	5	16	1.159886	3.506891	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.562500
body_of_pancreas_female_adult_53_years	chr16	20674249	20674266	20674265	+	High_confidence	3	4	7	0.507450	2.521641	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	1.000000
body_of_pancreas_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	525	528	544	39.436113	4.994974	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.943015
body_of_pancreas_female_adult_53_years	chr2	185425014	185425047	185425041	+	High_confidence	3	3	15	1.087393	3.521641	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185425014	185496487	STRG.26989.1	+	185425014,185434096,185483033,185496442	185425507,185434187,185483091,185496487	0.600000
body_of_pancreas_female_adult_53_years	chr16	20330054	20330073	20330054	-	RAMPAGE_only	4	4	11	0.797421	2.921928	chr16	20329820	20330142	LINE|L2|L2a	+	chr16	20309573	20327620	GP2|NM_001007240.2	-	20309573,20314656,20315955,20317212,20318184,20319619,20320261,20322868,20323380,20323815,20326337,20327466	20311281,20314701,20316040,20317375,20318430,20319768,20320473,20322979,20323389,20324256,20326467,20327620	0.545455
body_of_pancreas_female_adult_53_years	chr17	2975657	2975682	2975681	+	RAMPAGE_only	2	2	7	0.507450	2.807355	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2853905	3037737	STRG.145706.1	+	2853905,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2854102,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037737	1.000000
body_of_pancreas_female_adult_53_years	chr6	2961938	2961959	2961938	-	High_confidence	4	4	9	0.652436	2.725481	chr6	2961899	2962022	SINE|Alu|AluJr	-	chr6	2948158	2962108	SERPINB6|ENST00000380524.5	-	2948158,2948913,2953043,2954591,2955523,2959167,2961893	2948699,2949069,2953186,2954709,2955670,2959342,2962108	0.888889
body_of_pancreas_female_adult_53_years	chr16	81314782	81314819	81314782	-	High_confidence	6	6	36	2.609743	4.815623	chr16	81314567	81314733	SINE|MIR|MIR	-	chr16	81314307	81314770	STRG.144590.1	-	81314307	81314770	0.555556
body_of_pancreas_female_adult_53_years	chr12	120316921	120316982	120316974	+	High_confidence	12	12	41	2.972207	4.900116	chr12	120316786	120316989	SINE|MIR|MIR	-	chr12	120316964	120318317	STRG.122318.1	+	120316964	120318317	0.975610
body_of_pancreas_female_adult_53_years	chr1	237471146	237471173	237471146	+	High_confidence	35	36	119	8.626650	6.146971	chr1	237470691	237471420	LTR|ERV1|LTR9A1	-	chr1	237471125	237700512	STRG.14763.1	+	237471125,237491805,237492953,237496510,237500710,237503288,237506709,237511687,237530426,237548430,237550543,237566566,237569144,237589792,237590639,237591738,237593475,237595497,237602024,237610761,237614038,237617285,237623764,237625660,237627806,237631426,237633577,237634888,237638356,237639014,237640896,237643326,237648443,237649876,237651410,237654273,237655820,237657943,237659984,237660809,237666511,237667882,237674095,237674730,237698964,237700228	237471351,237491924,237493087,237496752,237500903,237503505,237506814,237511791,237530510,237548590,237550691,237566775,237569319,237590001,237590992,237591853,237593636,237595657,237602111,237610988,237614843,237617486,237623870,237625804,237628080,237631541,237633710,237634992,237638492,237639201,237641002,237643447,237648613,237650097,237651501,237654414,237656051,237658022,237660074,237660947,237666589,237667958,237674219,237674846,237699025,237700512	0.714286
body_of_pancreas_female_adult_53_years	chr16	75206637	75206669	75206637	-	High_confidence	22	23	47	3.407164	4.708324	chr16	75206482	75206663	SINE|MIR|MIRb	+	chr16	75204136	75207159	CTRB2|ENST00000481611.1	-	75204136,75204772,75205741,75206089	75204322,75205513,75205992,75207159	0.978723
body_of_pancreas_female_adult_53_years	chr9	128921940	128921958	128921957	+	High_confidence	5	6	17	1.232379	3.500000	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.882353
body_of_pancreas_female_adult_53_years	chr14	101731402	101731428	101731413	+	High_confidence	12	12	31	2.247278	4.280226	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732525	LINC00239|NR_026774.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732525	0.903226
body_of_pancreas_female_adult_53_years	chr9	123179103	123179138	123179103	-	RAMPAGE_only	3	3	12	0.869914	2.845351	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.750000
body_of_pancreas_female_adult_53_years	chr20	3795749	3795789	3795788	+	High_confidence	4	4	24	1.739829	3.827910	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.958333
body_of_pancreas_female_adult_53_years	chrX	73841836	73841877	73841876	-	High_confidence	7	7	24	1.739829	3.788755	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.875000
body_of_pancreas_female_adult_53_years	chr19	20750334	20750374	20750350	-	High_confidence	5	5	46	3.334671	4.689561	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20749686	20750338	STRG.155940.1	-	20749686,20750237	20750132,20750338	0.847826
body_of_pancreas_female_adult_53_years	chr5	34244760	34244816	34244811	-	High_confidence	6	6	35	2.537250	4.150293	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.542857
body_of_pancreas_female_adult_53_years	chr2	34677834	34677868	34677834	+	High_confidence	3	3	9	0.652436	2.725481	chr2	34677662	34678040	LTR|ERV1|Harlequin-int	+	chr2	34677834	34722547	LINC01320|ENST00000627935.2	+	34677834,34691590,34713578,34721998	34677927,34691669,34713773,34722547	0.666667
body_of_pancreas_female_adult_53_years	chr12	72432463	72432484	72432481	+	High_confidence	58	170	342	24.792556	6.564542	chr12	72432166	72432618	LTR|ERVK|LTR22A	-	chr12	72432430	72629194	STRG.120108.2	+	72432430,72469757,72473066,72499497,72542290,72562164,72562852,72568567,72575254,72575486,72618890,72621107	72432566,72469912,72473180,72499635,72542356,72562230,72563040,72568656,72575388,72575542,72619038,72629194	0.692982
body_of_pancreas_female_adult_53_years	chr2	100946531	100946536	100946535	+	RAMPAGE_only	8	9	14	1.014900	2.661226	chr2	100946372	100947169	LINE|L2|L2b	-	chr2	100936562	100963188	STRG.22176.8	+	100936562,100948234,100949366,100962754	100937842,100948355,100949480,100963188	0.785714
body_of_pancreas_female_adult_53_years	chr7	101308299	101308317	101308299	+	High_confidence	26	35	79	5.726936	5.235824	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.962025
body_of_pancreas_female_adult_53_years	chr17	339559	339607	339579	-	High_confidence	4	4	18	1.304871	3.146286	chr17	339540	339644	SINE|MIR|MIRb	-	chr17	281827	339659	RPH3AL|ENST00000575736.5	-	281827,319419,321271,327466,339507	281854,319549,321415,327579,339659	0.666667
body_of_pancreas_female_adult_53_years	chr6	2962022	2962023	2962022	-	High_confidence	5	5	7	0.507450	2.521641	chr6	2961899	2962022	SINE|Alu|AluJr	-	chr6	2948158	2962108	SERPINB6|ENST00000380524.5	-	2948158,2948913,2953043,2954591,2955523,2959167,2961893	2948699,2949069,2953186,2954709,2955670,2959342,2962108	1.000000
body_of_pancreas_female_adult_53_years	chr7	46969657	46969662	46969661	+	High_confidence	3	4	8	0.579943	2.500000	chr7	46969489	46969705	LINE|L2|L2c	-	chr7	46969701	46983429	AC004870.2|ENST00000445615.5	+	46969701,46972276,46982212,46983010	46969913,46972385,46982303,46983429	0.750000
body_of_pancreas_female_adult_53_years	chrX	5726324	5726325	5726324	-	High_confidence	15	15	15	1.087393	2.923231	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	1.000000
body_of_pancreas_female_adult_53_years	chr15	30624357	30624368	30624362	+	High_confidence	8	8	23	1.667336	2.845351	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.565217
body_of_pancreas_female_adult_53_years	chr2	131557333	131557334	131557333	+	RAMPAGE_only	4	4	6	0.434957	2.584963	chr2	131556954	131557921	LINE|L1|L1MA6	-	chr2	131565345	131565784	STRG.23458.1	+	131565345	131565784	0.500000
body_of_pancreas_female_adult_53_years	chr16	75226218	75227197	75226982	+	High_confidence	139	144	2031	147.232988	6.642399	chr16	75226955	75227086	SINE|MIR|MIRb	-	chr16	75226985	75228195	AC009078.2|ENST00000467381.1	+	75226985,75227989	75227306,75228195	0.634663
body_of_pancreas_female_adult_53_years	chr10	110874017	110874123	110874092	+	RAMPAGE_only	5	9	45	3.262178	3.482558	chr10	110874056	110874276	SINE|MIR|MIRb	+	chr10	110871954	110885339	STRG.104802.12	+	110871954,110883002	110881535,110885339	1.000000
body_of_pancreas_female_adult_53_years	chr19	49086520	49086547	49086520	+	High_confidence	4	5	14	1.014900	3.546594	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.785714
body_of_pancreas_female_adult_53_years	chr1	21983544	21983617	21983544	+	High_confidence	5	5	39	2.827221	4.357838	chr1	21983399	21983549	SINE|Alu|AluJo	+	chr1	21983605	22030617	AL590556.3|ENST00000650360.1	+	21983605,21984188,21986530,22005446,22005661,22007372,22009704,22025291,22030279	21983830,21984331,21986683,22005544,22005796,22007515,22009857,22025372,22030617	0.512821
body_of_pancreas_female_adult_53_years	chr9	127451087	127451201	127451200	-	High_confidence	14	16	48	3.479657	4.756509	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.895833
body_of_pancreas_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	155	192	553	40.088549	6.135582	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.907776
body_of_pancreas_female_adult_53_years	chr19	47750963	47751103	47751102	+	High_confidence	11	11	57	4.132093	4.984390	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47750177	47757005	NOP53|ENST00000595143.5	+	47750177,47750907,47751519,47752511,47754526,47754708,47755783,47756527,47756687,47756998	47750286,47751107,47751590,47752607,47754631,47754757,47755822,47756604,47756744,47757005	0.807018
body_of_pancreas_female_adult_53_years	chr2	47369308	47369311	47369310	+	High_confidence	24	35	40	2.899714	4.406821	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369147	47387028	EPCAM|NM_002354.2	+	47369147,47373462,47373807,47375233,47377013,47378952,47379768,47385165,47386571	47369581,47373570,47374048,47375299,47377077,47379054,47379969,47385210,47387028	0.975000
body_of_pancreas_female_adult_53_years	chr10	116554485	116554492	116554491	+	RAMPAGE_only	92	103	167	12.106307	5.258600	chr10	116554056	116554491	DNA|hAT-Charlie|Charlie13b	-	chr10	116545930	116567855	PNLIP|ENST00000369221.2	+	116545930,116546092,116547293,116548359,116551097,116553726,116555177,116555387,116555999,116559153,116560415,116561471,116567734	116545958,116546138,116547448,116548482,116551232,116553838,116555297,116555507,116556118,116559283,116560524,116561636,116567855	0.934132
body_of_pancreas_female_adult_53_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	7	7	7	0.507450	2.521641	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
breast_epithelium_female_adult_51_years	chr4	14877342	14877370	14877369	-	High_confidence	4	4	10	0.664760	3.169925	chr4	14877247	14877682	LINE|L2|L2c	+	chr4	14468719	14877604	STRG.39477.2	-	14468719,14477346,14700742,14716094,14763000,14859542,14877258	14474563,14477458,14700781,14716169,14765136,14859616,14877604	0.500000
breast_epithelium_female_adult_51_years	chr13	29647532	29647576	29647540	+	High_confidence	3	4	24	1.595423	4.001629	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647551	29655475	STRG.110228.1	+	29647551,29655069	29647724,29655475	0.916667
breast_epithelium_female_adult_51_years	chr8	29748331	29748332	29748331	+	High_confidence	9	9	12	0.797712	3.277613	chr8	29748353	29748657	LTR|ERVL-MaLR|MLT1B	+	chr8	29748349	29798492	LINC02099|ENST00000517491.1	+	29748349,29790331,29791094,29796834	29748579,29790447,29791881,29798492	0.500000
breast_epithelium_female_adult_51_years	chr6	3083297	3083300	3083297	+	RAMPAGE_only	3	3	8	0.531808	2.807355	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.750000
breast_epithelium_female_adult_51_years	chr2	131555069	131555075	131555069	+	RAMPAGE_only	6	7	10	0.664760	2.646439	chr2	131554702	131555824	LINE|L1|L1MA6	-	chr2	131544924	131656426	STRG.20199.1	+	131544924,131553012,131555071,131557350,131564860,131577507,131580151,131582017,131591801,131596773,131597047,131600004,131601422,131604017,131609381,131611132,131612985,131638576	131545201,131553166,131555184,131557463,131575207,131577614,131580264,131582129,131592104,131596888,131597221,131600111,131601556,131604088,131609452,131611709,131613103,131656426	0.900000
breast_epithelium_female_adult_51_years	chr6	26956454	26956466	26956465	-	High_confidence	4	4	9	0.598284	2.750000	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.777778
breast_epithelium_female_adult_51_years	chr10	37285156	37285195	37285176	+	RAMPAGE_only	12	13	25	1.661899	3.970176	chr10	37284156	37285722	LTR|ERV1|LTR12C	-	chr10	37248117	37315801	STRG.91112.15	+	37248117,37261863,37262482,37264529,37314377,37315695	37252396,37261925,37262539,37309328,37314441,37315801	0.960000
breast_epithelium_female_adult_51_years	chr4	40191070	40191087	40191077	+	High_confidence	4	5	13	0.864187	3.392747	chr4	40191101	40191231	DNA|TcMar-Mariner|MARNA	+	chr4	40191052	40243995	RHOH|ENST00000505618.5	+	40191052,40242713,40243177	40191338,40242834,40243995	0.846154
breast_epithelium_female_adult_51_years	chr4	138930067	138930068	138930067	+	High_confidence	8	8	10	0.664760	2.646439	chr4	138928237	138931267	LTR|ERV1|HERVH-int	+	chr4	138929991	138942207	STRG.45394.1	+	138929991,138939727	138930416,138942207	0.900000
breast_epithelium_female_adult_51_years	chr18	7946867	7946879	7946878	+	High_confidence	4	4	14	0.930663	3.392747	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.857143
breast_epithelium_female_adult_51_years	chr8	143039231	143039257	143039246	+	High_confidence	2	2	10	0.664760	2.947703	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.800000
breast_epithelium_female_adult_51_years	chr4	95701856	95701876	95701864	+	High_confidence	5	6	22	1.462471	4.186704	chr4	95701791	95702238	LTR|ERVL-MaLR|MLT1C	+	chr4	95701907	95702339	STRG.43320.1	+	95701907	95702339	0.500000
breast_epithelium_female_adult_51_years	chr11	65430512	65430543	65430512	+	RAMPAGE_only	3	3	10	0.664760	2.921928	chr11	65430444	65430516	DNA|hAT-Charlie|Charlie4z	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
breast_epithelium_female_adult_51_years	chr20	56809754	56809758	56809757	-	High_confidence	53	53	89	5.916360	3.856696	chr20	56809687	56809919	LINE|L2|L2b	-	chr20	56809018	56809709	STRG.143594.1	-	56809018	56809709	0.955056
breast_epithelium_female_adult_51_years	chr11	62260855	62260915	62260895	-	High_confidence	36	37	140	9.306634	6.044140	chr11	62260827	62260914	LINE|L2|L2c	-	chr11	62213426	62260549	AP003306.1|ENST00000529875.1	-	62213426,62214475,62260497	62213626,62214576,62260549	0.514286
breast_epithelium_female_adult_51_years	chr7	30349413	30349437	30349436	+	RAMPAGE_only	3	3	9	0.598284	2.725481	chr7	30349425	30349529	SINE|MIR|MIRb	-	chr7	30284718	30380669	STRG.68769.3	+	30284718,30323641,30355727	30285826,30323737,30380669	1.000000
breast_epithelium_female_adult_51_years	chr19	35115804	35115845	35115804	+	High_confidence	9	10	32	2.127231	4.323231	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.906250
breast_epithelium_female_adult_51_years	chr20	50267474	50267502	50267474	+	High_confidence	10	18	70	4.653317	5.158223	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.985714
breast_epithelium_female_adult_51_years	chr12	11713776	11713802	11713801	+	RAMPAGE_only	3	3	6	0.398856	2.584963	chr12	11713762	11713934	DNA|hAT-Charlie|MER5B	+	chr12	11650010	11895402	STRG.104055.2	+	11650010,11752449,11825643,11853426,11869423,11884444,11885925,11890940	11716743,11752579,11839304,11853561,11869969,11884587,11886026,11895402	1.000000
breast_epithelium_female_adult_51_years	chr19	7635818	7635826	7635825	-	RAMPAGE_only	10	11	21	1.395995	3.721928	chr19	7635792	7635861	DNA|hAT-Blackjack|MER81	+	chr19	7631628	7637010	STRG.136832.1	-	7631628,7632392,7632715,7633406,7635791	7631808,7632517,7632830,7633490,7637010	0.904762
breast_epithelium_female_adult_51_years	chr15	89837951	89837966	89837965	-	High_confidence	16	17	38	2.526086	5.037401	chr15	89837927	89838155	SINE|MIR|MIRb	+	chr15	89835423	89837954	AP3S2|ENST00000558926.1	-	89835423,89837614	89835643,89837954	0.710526
breast_epithelium_female_adult_51_years	chr16	20674753	20674775	20674765	+	High_confidence	15	17	54	3.589702	5.208410	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674607	20688899	STRG.125891.12	+	20674607,20679157	20675055,20688899	0.833333
breast_epithelium_female_adult_51_years	chr12	9965305	9965321	9965320	+	RAMPAGE_only	6	6	10	0.664760	3.169925	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.700000
breast_epithelium_female_adult_51_years	chr1	51403428	51403433	51403428	-	RAMPAGE_only	4	4	15	0.997139	2.973557	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	1.000000
breast_epithelium_female_adult_51_years	chr10	118311680	118311686	118311685	-	High_confidence	4	4	8	0.531808	2.500000	chr10	118311545	118311893	DNA|hAT-Charlie|Charlie19a	+	chr10	118310413	118311486	FAM204A|ENST00000467890.1	-	118310413,118311206	118310908,118311486	1.000000
breast_epithelium_female_adult_51_years	chr14	53217886	53217891	53217890	+	High_confidence	5	6	12	0.797712	3.277613	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217954	53786106	AL365295.1|ENST00000648066.1	+	53217954,53313715,53318030,53369451,53687198,53737666,53765657,53769014,53785144,53785727	53218055,53313790,53318138,53369501,53687374,53737766,53765719,53769133,53785250,53786106	0.500000
breast_epithelium_female_adult_51_years	chr14	81170392	81170420	81170419	-	High_confidence	35	36	153	10.170822	5.636210	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81165210	81170416	STRG.118800.1	-	81165210,81170108	81165381,81170416	0.901961
breast_epithelium_female_adult_51_years	chr9	68975832	68975849	68975842	-	High_confidence	9	9	37	2.459611	4.918781	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.594595
breast_epithelium_female_adult_51_years	chr11	71745875	71745915	71745875	+	High_confidence	41	41	188	12.497481	6.130452	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.898936
breast_epithelium_female_adult_51_years	chr9	125650426	125650446	125650426	-	High_confidence	5	6	10	0.664760	3.169925	chr9	125649959	125650542	LINE|L2|L2b	+	chr9	125444500	125650417	MAPKAP1|ENST00000420643.5	-	125444500,125467971,125484442,125543058,125559632,125585554,125599834,125650363	125444598,125468109,125484583,125543168,125559809,125585727,125599927,125650417	0.700000
breast_epithelium_female_adult_51_years	chr14	77076159	77076194	77076193	-	High_confidence	4	6	20	1.329519	3.616349	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77074237	77076355	STRG.118165.1	-	77074237,77076104	77074598,77076355	0.650000
breast_epithelium_female_adult_51_years	chr2	149006003	149006017	149006003	+	RAMPAGE_only	14	14	26	1.728375	4.019471	chr2	149005870	149006070	SINE|MIR|MIRc	-	chr2	148999934	149026759	KIF5C|ENST00000482151.1	+	148999934,149000721,149005392,149007962,149010134,149011569,149023077	149000524,149000782,149005464,149008067,149010351,149011683,149026759	0.500000
breast_epithelium_female_adult_51_years	chr19	48868595	48868617	48868613	-	High_confidence	329	396	1530	101.708219	7.634047	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837182	48868614	STRG.139498.2	-	48837182,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868614	0.985621
breast_epithelium_female_adult_51_years	chr17	59619894	59619923	59619894	+	High_confidence	653	734	1858	123.512334	5.846981	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.946179
breast_epithelium_female_adult_51_years	chr9	84368670	84368699	84368670	-	High_confidence	4	4	15	0.997139	3.664498	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.800000
breast_epithelium_female_adult_51_years	chr7	131075991	131075992	131075991	-	RAMPAGE_only	7	8	10	0.664760	2.725481	chr7	131075705	131076129	LTR|ERVL-MaLR|MSTC	-	chr7	130944174	131107923	STRG.74053.10	-	130944174,130984052,131052424,131086218	130945835,130984109,131086198,131107923	0.900000
breast_epithelium_female_adult_51_years	chr5	67646810	67646812	67646810	-	High_confidence	62	93	104	6.913500	6.268758	chr5	67646558	67646761	SINE|MIR|MIRc	-	chr5	67627165	67646802	STRG.50579.2	-	67627165,67634306,67636807,67646605	67633335,67634395,67636948,67646802	0.625000
breast_epithelium_female_adult_51_years	chr1	84274981	84274999	84274998	+	High_confidence	64	66	98	6.514644	5.557333	chr1	84274743	84275154	LTR|ERVL-MaLR|MSTD	+	chr1	84275000	84285800	STRG.5263.1	+	84275000,84284775	84275075,84285800	0.857143
breast_epithelium_female_adult_51_years	chr9	69407794	69407795	69407794	+	RAMPAGE_only	7	8	9	0.598284	3.169925	chr9	69407074	69409905	LTR|ERV1|HERVH-int	-	chr9	69472465	69494513	AL353693.1|ENST00000429567.2	+	69472465,69474262,69494286	69472590,69474352,69494513	0.555556
breast_epithelium_female_adult_51_years	chr3	188153225	188153229	188153225	+	High_confidence	2	2	6	0.398856	2.584963	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.666667
breast_epithelium_female_adult_51_years	chr16	20676155	20676202	20676161	-	High_confidence	22	29	71	4.719793	5.632073	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.704225
breast_epithelium_female_adult_51_years	chr19	20423697	20423704	20423703	-	RAMPAGE_only	23	34	62	4.121510	4.956725	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.645161
breast_epithelium_female_adult_51_years	chr9	72363469	72363510	72363509	-	RAMPAGE_only	3	3	11	0.731236	3.121928	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72356945	72364976	STRG.85453.7	-	72356945,72359417,72360109,72360627,72364695	72357056,72359521,72360221,72363606,72364976	0.909091
breast_epithelium_female_adult_51_years	chr6	159681386	159681387	159681386	-	RAMPAGE_only	6	6	9	0.598284	2.750000	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679115	159693228	STRG.66310.2	-	159679115,159680822,159684853,159688125,159692660,159693144	159680659,159682638,159685033,159688242,159692863,159693228	0.888889
breast_epithelium_female_adult_51_years	chr19	9700673	9700674	9700673	-	High_confidence	18	19	20	1.329519	3.386637	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.850000
breast_epithelium_female_adult_51_years	chr7	134565108	134565109	134565108	+	High_confidence	90	93	112	7.445308	5.771195	chr7	134564837	134565429	LTR|ERV1|LTR10D	+	chr7	134565067	134579865	STRG.74249.1	+	134565067,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134565546,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579865	0.946429
breast_epithelium_female_adult_51_years	chr11	65382789	65382803	65382789	-	High_confidence	4	4	10	0.664760	2.947703	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375191	65382674	SLC25A45|NM_182556.3	-	65375191,65376817,65379375,65379866,65380131,65381914,65382485	65376675,65377076,65379561,65379938,65380175,65381969,65382674	0.600000
breast_epithelium_female_adult_51_years	chr7	101217578	101217599	101217594	-	High_confidence	3	4	10	0.664760	3.169925	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101215907	101217570	STRG.72531.4	-	101215907,101216196,101216409,101216694,101217165	101216020,101216326,101216546,101216786,101217570	0.800000
breast_epithelium_female_adult_51_years	chr6	71291106	71291181	71291142	+	High_confidence	5	5	15	0.997139	3.182006	chr6	71290785	71291650	LINE|L2|L2	-	chr6	71291361	71293612	OGFRL1|ENST00000467503.1	+	71291361,71293292,71293532	71292020,71293379,71293612	0.866667
breast_epithelium_female_adult_51_years	chr7	107580245	107580267	107580264	+	High_confidence	387	387	1926	128.032700	7.366750	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.926791
breast_epithelium_female_adult_51_years	chr22	39021127	39021156	39021127	+	High_confidence	4	6	19	1.263043	3.892407	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021126	39025501	STRG.147666.9	+	39021126,39022821,39025069	39021536,39023014,39025501	1.000000
breast_epithelium_female_adult_51_years	chr11	7905925	7905979	7905925	-	High_confidence	8	12	54	3.589702	5.169524	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7696504	7905955	STRG.96017.12	-	7696504,7700295,7701323,7701715,7702156,7703697,7704564,7879006,7879594,7881088,7881955,7882859,7905602	7698773,7700485,7701475,7701811,7702329,7703789,7704674,7879083,7879759,7881149,7882073,7882933,7905955	0.703704
breast_epithelium_female_adult_51_years	chr4	142474721	142474772	142474755	-	High_confidence	28	28	92	6.115788	5.672914	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.804348
breast_epithelium_female_adult_51_years	chr5	128082251	128082276	128082251	-	High_confidence	6	10	27	1.794851	4.243856	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	128024026	128082960	LINC01184|ENST00000508878.5	-	128024026,128061143,128076946,128081972,128082734	128024298,128061244,128077093,128082194,128082960	0.555556
breast_epithelium_female_adult_51_years	chr8	124526284	124526292	124526291	-	RAMPAGE_only	3	3	8	0.531808	2.750000	chr8	124525908	124526339	LTR|ERV1|LTR56	+	chr8	124515923	124523479	TATDN1|ENST00000518133.5	-	124515923,124518741,124522150,124522936,124523206	124516030,124518881,124522200,124523002,124523479	0.500000
breast_epithelium_female_adult_51_years	chrX	5726324	5726325	5726324	-	High_confidence	15	17	18	1.196567	2.813846	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.833333
breast_epithelium_female_adult_51_years	chr11	123061128	123061257	123061256	-	High_confidence	20	20	115	7.644735	5.609159	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.973913
breast_epithelium_female_adult_51_years	chr12	79455504	79455528	79455504	-	High_confidence	1	1	8	0.531808	2.807355	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.875000
breast_epithelium_female_adult_51_years	chr10	65570509	65570536	65570519	+	High_confidence	20	26	102	6.780548	5.976155	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570526	65616806	STRG.91604.3	+	65570526,65571424,65572934,65585484,65615635	65570759,65571579,65573056,65585802,65616806	0.901961
breast_epithelium_female_adult_51_years	chr10	34973970	34974012	34973990	+	High_confidence	5	5	26	1.728375	4.209867	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34973983	34975576	AL392046.2|ENST00000635301.1	+	34973983,34974193,34974657	34974088,34974282,34975576	0.538462
breast_epithelium_female_adult_51_years	chr12	10553364	10553365	10553364	+	High_confidence	32	36	40	2.659038	4.953056	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.650000
breast_epithelium_female_adult_51_years	chr1	117211182	117211184	117211182	-	High_confidence	4	6	8	0.531808	2.807355	chr1	117211182	117211360	LINE|CR1|L3	+	chr1	117143586	117210960	VTCN1|NR_045603.1	-	117143586,117147612,117153090,117156573,117170106,117210823	117145225,117147782,117153369,117157011,117170171,117210960	0.625000
breast_epithelium_female_adult_51_years	chr1	33021416	33021429	33021416	-	High_confidence	5	5	11	0.731236	2.663533	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010754	33021690	STRG.1665.6	-	33010754,33014521,33021366,33021592	33013402,33014594,33021461,33021690	1.000000
breast_epithelium_female_adult_51_years	chr12	56157286	56157341	56157338	+	High_confidence	18	21	59	3.922082	4.494234	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.949153
breast_epithelium_female_adult_51_years	chr19	20750334	20750371	20750362	-	High_confidence	32	33	178	11.832721	6.323124	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746861	20750379	STRG.137775.1	-	20746861,20749986,20750237	20749661,20750132,20750379	0.859551
breast_epithelium_female_adult_51_years	chr2	159428313	159428376	159428356	-	RAMPAGE_only	7	7	23	1.528947	4.186704	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.608696
breast_epithelium_female_adult_51_years	chr3	149283038	149283070	149283038	-	RAMPAGE_only	8	8	26	1.728375	4.392747	chr3	149282835	149283083	LINE|L1|L1MCb	+	chr3	149229444	149277662	STRG.34993.3	-	149229444,149230738,149241361,149244253,149245662,149247367,149249021,149252845,149255929,149256396,149257457,149266865,149269819,149270749,149273502,149273999,149275462,149276509	149229687,149230901,149241501,149244455,149245769,149247496,149250169,149254268,149256141,149256537,149257589,149267037,149270062,149270920,149273715,149274268,149275702,149277662	0.730769
breast_epithelium_female_adult_51_years	chr2	185425227	185425257	185425227	+	High_confidence	2	2	11	0.731236	2.732159	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185425334	185502995	STRG.23346.1	+	185425334,185434096,185483033,185502662	185425507,185434187,185483091,185502995	0.545455
breast_epithelium_female_adult_51_years	chr4	138931659	138931767	138931734	-	High_confidence	10	10	70	4.653317	5.611216	chr4	138931408	138931902	LTR|ERV1|HERVH-int	+	chr4	138929499	138931759	STRG.45379.6	-	138929499	138931759	0.628571
breast_epithelium_female_adult_51_years	chr3	15738511	15738512	15738511	+	High_confidence	338	356	357	23.731918	4.798707	chr3	15738158	15739435	LTR|ERVK|MER11B	-	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.994398
breast_epithelium_female_adult_51_years	chr21	8817798	8817799	8817798	+	RAMPAGE_only	9	10	10	0.664760	2.947703	chr21	8817416	8819072	LINE|L1|L1PB	-	chr21	8823066	8878839	STRG.145292.1	+	8823066,8857287,8859996,8864000,8866870,8866990,8873016,8877130,8878663	8823205,8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878839	0.900000
breast_epithelium_female_adult_51_years	chr2	130428500	130428527	130428523	-	High_confidence	10	10	23	1.528947	4.055958	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046259.1	-	130416749,130419070,130425090,130425913,130427703	130418298,130419245,130425158,130426038,130428546	1.000000
breast_epithelium_female_adult_51_years	chr12	643625	643636	643635	-	High_confidence	11	11	30	1.994279	4.215061	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.933333
breast_epithelium_female_adult_51_years	chr3	123620626	123620627	123620626	-	High_confidence	7	7	10	0.664760	2.503258	chr3	123620562	123620624	LINE|RTE-BovB|MamRTE1	-	chr3	123614063	123620626	MYLK|ENST00000583087.5	-	123614063,123618638,123620206,123620496	123614349,123618770,123620336,123620626	0.700000
breast_epithelium_female_adult_51_years	chr7	128903361	128903390	128903361	-	High_confidence	4	4	11	0.731236	3.121928	chr7	128903088	128903463	LINE|L2|L2b	+	chr7	128889946	128903352	KCP|ENST00000616669.4	-	128889946,128890904,128891184,128891450,128891645,128892513,128892687,128892868,128893237,128893390,128893805,128894199,128902776,128903163	128890513,128891096,128891278,128891533,128891819,128892607,128892794,128893021,128893319,128893476,128894055,128894293,128902859,128903352	0.818182
breast_epithelium_female_adult_51_years	chr11	85682862	85682863	85682862	-	High_confidence	5	6	8	0.531808	2.521641	chr11	85682520	85682971	DNA|hAT-Tip100|MER115	+	chr11	85660167	85682863	CREBZF|ENST00000531515.5	-	85660167,85662388,85663523,85682716	85660597,85662457,85663601,85682863	0.500000
breast_epithelium_female_adult_51_years	chrX	13889045	13889046	13889045	-	RAMPAGE_only	98	100	104	6.913500	6.029158	chrX	13889024	13889187	DNA|hAT-Charlie|MER5B	+	chrX	13774336	13938415	GPM6B|ENST00000398361.7	-	13774336,13776237,13777351,13779817,13783364,13785621,13938326	13774624,13776303,13777425,13779989,13783521,13785808,13938415	0.519231
breast_epithelium_female_adult_51_years	chr5	34244698	34244781	34244698	-	High_confidence	48	51	199	13.228716	6.358915	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34164697	34244698	STRG.49234.10	-	34164697,34175444,34175821,34179012,34182679,34218294,34244615	34169153,34175537,34175957,34179097,34200921,34218450,34244698	0.633166
breast_epithelium_female_adult_51_years	chr1	116390289	116390305	116390289	+	RAMPAGE_only	2	2	12	0.797712	3.027169	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.916667
breast_epithelium_female_adult_51_years	chr4	141332616	141332617	141332616	-	High_confidence	124	125	126	8.375971	4.803909	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.944444
breast_epithelium_female_adult_51_years	chr11	287872	287941	287940	+	High_confidence	16	17	64	4.254461	5.554924	chr11	287740	288214	LINE|L2|L2a	-	chr11	288037	288987	AC136475.3|ENST00000534742.1	+	288037,288949	288811,288987	0.953125
breast_epithelium_female_adult_51_years	chr10	37288218	37288241	37288218	+	RAMPAGE_only	2	2	7	0.465332	2.521641	chr10	37285722	37289009	LINE|L1|L1PA10	-	chr10	37248117	37315801	STRG.91112.15	+	37248117,37261863,37262482,37264529,37314377,37315695	37252396,37261925,37262539,37309328,37314441,37315801	1.000000
breast_epithelium_female_adult_51_years	chr4	158173024	158173025	158173024	-	High_confidence	135	140	171	11.367389	6.092217	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158124603	158173023	STRG.46612.3	-	158124603,158155610,158170465,158172867	158131012,158155825,158171599,158173023	0.660819
breast_epithelium_female_adult_51_years	chr20	24930628	24930692	24930639	+	High_confidence	79	79	402	26.723336	6.681377	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930632	24932971	STRG.142248.1	+	24930632,24931346	24930774,24932971	0.947761
breast_epithelium_female_adult_51_years	chr4	155122722	155122758	155122757	-	High_confidence	4	4	12	0.797712	3.277613	chr4	155121473	155122913	LTR|ERV1|MER4-int	-	chr4	155121874	155122807	STRG.46403.1	-	155121874,155122618	155122367,155122807	0.583333
breast_epithelium_female_adult_51_years	chr12	12927723	12927741	12927733	+	High_confidence	25	25	56	3.722654	5.472446	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.696429
breast_epithelium_female_adult_51_years	chr13	52236177	52236218	52236182	-	High_confidence	71	82	168	11.167961	6.362058	chr13	52235788	52236194	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.553571
breast_epithelium_female_adult_51_years	chr15	75347039	75347082	75347042	+	High_confidence	13	14	77	5.118649	5.091416	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.597403
breast_epithelium_female_adult_51_years	chr21	33931141	33931147	33931146	+	High_confidence	4	4	8	0.531808	2.521641	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.500000
breast_epithelium_female_adult_51_years	chr4	14877420	14877425	14877420	-	High_confidence	4	4	10	0.664760	2.846439	chr4	14877247	14877682	LINE|L2|L2c	+	chr4	14687870	14877604	STRG.39477.3	-	14687870,14859542,14877258	14700781,14859616,14877604	0.700000
breast_epithelium_female_adult_51_years	chr9	69408287	69408349	69408287	-	High_confidence	15	19	108	7.179404	6.130961	chr9	69407074	69409905	LTR|ERV1|HERVH-int	-	chr9	69390166	69408386	STRG.85187.4	-	69390166,69398733,69407935	69398398,69398833,69408386	0.861111
breast_epithelium_female_adult_51_years	chr14	65594339	65594342	65594341	+	RAMPAGE_only	3	7	8	0.531808	2.521641	chr14	65594100	65595106	LTR|ERV1|LTR28B	-	chr14	65413068	65742936	STRG.117246.3	+	65413068,65455620,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65413214,65455718,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65742936	0.625000
breast_epithelium_female_adult_51_years	chr17	47067498	47067518	47067498	-	High_confidence	100	107	441	29.315899	5.896059	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.907029
breast_epithelium_female_adult_51_years	chr5	154287456	154287470	154287469	+	High_confidence	9	9	18	1.196567	3.683542	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	0.722222
breast_epithelium_female_adult_51_years	chr9	92536601	92536602	92536601	-	High_confidence	30	32	34	2.260183	4.452820	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.911765
breast_epithelium_female_adult_51_years	chr2	232816742	232816752	232816751	+	RAMPAGE_only	5	5	13	0.864187	3.084963	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.923077
breast_epithelium_female_adult_51_years	chr5	109383422	109383465	109383454	-	High_confidence	4	4	20	1.329519	4.142664	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.950000
breast_epithelium_female_adult_51_years	chr3	65872648	65872689	65872648	-	RAMPAGE_only	3	3	11	0.731236	2.846439	chr3	65872578	65873071	LINE|L1|L1ME3	+	chr3	65771068	65891758	STRG.30839.11	-	65771068,65783904,65808470,65860126	65783746,65808069,65859610,65891758	0.909091
breast_epithelium_female_adult_51_years	chr1	147225792	147225793	147225792	-	High_confidence	5	5	7	0.465332	2.521641	chr1	147225754	147226210	LTR|ERV1|LTR2C	-	chr1	147213358	147225873	FMO5|ENST00000533848.2	-	147213358,147215753,147224894,147225728	147213470,147215942,147225066,147225873	1.000000
breast_epithelium_female_adult_51_years	chr11	134467260	134467265	134467260	+	High_confidence	7	7	13	0.864187	3.251629	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134466387	134472201	STRG.102849.1	+	134466387,134467864,134469486	134467615,134467987,134472201	0.923077
breast_epithelium_female_adult_51_years	chr14	64087849	64087850	64087849	+	RAMPAGE_only	8	8	8	0.531808	2.750000	chr14	64087899	64088180	SINE|Alu|AluSz	+	chr14	64075614	64226430	SYNE2|ENST00000394768.6	+	64075614,64078465,64080455,64081442,64087418,64087670,64089573,64090865,64093348,64097948,64098746,64101931,64107490,64113340,64119426,64120926,64122011,64122285,64125078,64126326,64126597,64128451,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64165284,64167232,64167494,64168876,64170227,64174943,64177357,64186423,64188549,64190070,64202800,64208757,64209427,64209941,64211960,64212810,64214193,64216247,64218397,64219207,64220436,64221575,64223188,64224460,64224995,64225318	64076100,64078606,64080638,64081580,64087487,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64122427,64125210,64126479,64126807,64128553,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64165410,64167387,64167639,64168971,64170462,64175138,64177483,64186579,64188708,64190237,64202963,64208945,64209578,64210124,64212098,64213005,64214470,64216387,64218512,64219410,64220637,64221704,64223380,64224547,64225045,64226430	1.000000
breast_epithelium_female_adult_51_years	chr18	12843820	12843837	12843836	-	High_confidence	2	2	7	0.465332	2.584963	chr18	12843767	12845707	LINE|L1|L1MD2	-	chr18	12792301	12843981	PTPN2|ENST00000591497.5	-	12792301,12801969,12814202,12817155,12825809,12830942,12836790,12840713,12843904	12794485,12802151,12814355,12817365,12825944,12831041,12836891,12840962,12843981	0.714286
breast_epithelium_female_adult_51_years	chr12	126772336	126772352	126772336	-	High_confidence	5	5	12	0.797712	2.913977	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126748055	126772356	LINC00944|ENST00000542248.5	-	126748055,126760931,126763414,126772078	126748127,126761045,126763498,126772356	0.833333
breast_epithelium_female_adult_51_years	chr8	74828240	74828241	74828240	+	RAMPAGE_only	10	10	15	0.997139	3.378783	chr8	74828010	74828314	LINE|L2|L2a	-	chr8	74824785	74849425	PI15|ENST00000523773.1	+	74824785,74843980,74845127,74845381,74849117	74825522,74844099,74845260,74845497,74849425	0.733333
breast_epithelium_female_adult_51_years	chr5	134612956	134612989	134612956	-	RAMPAGE_only	7	7	15	0.997139	3.006239	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606429	134614903	SAR1B|ENST00000508363.5	-	134606429,134608371,134609570,134612690	134607066,134608503,134609674,134614903	1.000000
breast_epithelium_female_adult_51_years	chr4	86453149	86453203	86453202	-	High_confidence	4	4	26	1.728375	3.823935	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.807692
breast_epithelium_female_adult_51_years	chr9	98943575	98943576	98943575	+	High_confidence	8	10	12	0.797712	3.251629	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
breast_epithelium_female_adult_51_years	chr14	41911238	41911274	41911264	+	High_confidence	21	21	63	4.187986	5.166293	chr14	41908983	41911704	LINE|L1|L1PA3	-	chr14	41911268	41912342	STRG.115352.1	+	41911268	41912342	0.841270
breast_epithelium_female_adult_51_years	chr1	155679929	155679930	155679929	-	High_confidence	8	8	8	0.531808	2.750000	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	1.000000
breast_epithelium_female_adult_51_years	chr18	39800293	39800314	39800313	-	High_confidence	11	14	46	3.057894	5.141250	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.521739
breast_epithelium_female_adult_51_years	chr20	3795750	3795789	3795750	+	High_confidence	31	32	106	7.046452	5.501862	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.981132
breast_epithelium_female_adult_51_years	chr19	3575617	3575629	3575628	+	High_confidence	4	5	11	0.731236	3.321928	chr19	3575668	3575971	SINE|Alu|AluSx1	+	chr19	3575650	3578671	HMG20B|ENST00000487894.5	+	3575650,3576552,3576891,3577980,3578508	3576307,3576625,3577107,3578113,3578671	0.636364
breast_epithelium_female_adult_51_years	chr8	17692225	17692259	17692225	-	High_confidence	6	6	17	1.130091	3.734522	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.705882
breast_epithelium_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	51	53	53	3.523226	4.897724	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.830189
breast_epithelium_female_adult_51_years	chrX	5726077	5726117	5726116	-	High_confidence	6	8	25	1.661899	3.555533	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719237	5726369	STRG.148710.1	-	5719237,5725929	5719872,5726369	0.800000
breast_epithelium_female_adult_51_years	chr17	75742744	75742759	75742758	+	High_confidence	3	3	7	0.465332	2.521641	chr17	75742779	75742995	SINE|MIR|MIRb	+	chr17	75742423	75749045	ITGB4|ENST00000584025.1	+	75742423,75743712,75746263,75748840	75742761,75743861,75746375,75749045	1.000000
breast_epithelium_female_adult_51_years	chr16	20674403	20674405	20674403	+	High_confidence	3	6	6	0.398856	2.584963	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.500000
breast_epithelium_female_adult_51_years	chr19	44914383	44914432	44914426	+	High_confidence	6	6	24	1.595423	3.772055	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	1.000000
breast_epithelium_female_adult_51_years	chr3	14047185	14047206	14047205	-	High_confidence	4	5	11	0.731236	2.921928	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14041489	14046891	STRG.27778.1	-	14041489,14046812	14041628,14046891	0.545455
breast_epithelium_female_adult_51_years	chr9	133126483	133126484	133126483	+	High_confidence	90	99	114	7.578259	5.703348	chr9	133126342	133126571	DNA|hAT-Charlie|MER102b	+	chr9	133126495	133126964	STRG.88746.1	+	133126495	133126964	0.877193
breast_epithelium_female_adult_51_years	chr9	137738601	137738628	137738601	+	High_confidence	4	4	8	0.531808	2.750000	chr9	137738221	137739080	LINE|L1|L1MB3	+	chr9	137738606	137754221	EHMT1|ENST00000495657.5	+	137738606,137743370,137743901,137752330,137754170	137738779,137743528,137744090,137752408,137754221	0.750000
breast_epithelium_female_adult_51_years	chr8	74668510	74668536	74668535	+	RAMPAGE_only	4	4	10	0.664760	2.947703	chr8	74668523	74668613	LINE|L2|L2a	+	chr8	74599865	74758352	MIR2052HG|ENST00000523118.5	+	74599865,74612852,74702378,74703605,74752440,74756606	74599908,74612940,74702456,74703682,74752533,74758352	0.500000
breast_epithelium_female_adult_51_years	chr11	112787642	112787649	112787648	+	High_confidence	20	20	40	2.659038	4.859641	chr11	112787482	112787755	LTR|ERVL-MaLR|MLT1K	-	chr11	112787546	112802852	STRG.101606.1	+	112787546,112788280,112795441	112787722,112788581,112802852	0.850000
breast_epithelium_female_adult_51_years	chr1	43553158	43553159	43553158	+	RAMPAGE_only	5	6	7	0.465332	2.584963	chr1	43553152	43553374	SINE|MIR|MIR	+	chr1	43545075	43579284	PTPRF|ENST00000437607.1	+	43545075,43553491,43553799,43569589,43578809,43579175	43545166,43553637,43553941,43569778,43578920,43579284	0.714286
breast_epithelium_female_adult_51_years	chr14	106845858	106845866	106845858	-	RAMPAGE_only	14	14	26	1.728375	4.026987	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106810441	106811131	IGHV3-74|ENST00000424969.2	-	106810441,106810849	106810746,106811131	0.500000
breast_epithelium_female_adult_51_years	chr11	61588355	61588409	61588382	-	RAMPAGE_only	3	3	12	0.797712	3.459432	chr11	61588272	61588409	SINE|MIR|MIRb	-	chr11	61513715	61580872	SYT7|NM_001300773.1	-	61513715,61523074,61523826,61524362,61527914,61532988,61547176,61551383,61556103,61580789	61518731,61523274,61523941,61524532,61528185,61533124,61547308,61551463,61556207,61580872	0.583333
breast_epithelium_female_adult_51_years	chr22	18149851	18149874	18149873	+	High_confidence	7	7	13	0.864187	2.688722	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.923077
breast_epithelium_female_adult_51_years	chr6	34757079	34757104	34757103	+	High_confidence	2	2	8	0.531808	2.807355	chr6	34757127	34757285	LINE|L2|L2a	+	chr6	34757093	34773857	SNRPC|NM_003093.2	+	34757093,34757911,34762594,34767907,34770290,34773445	34757551,34757954,34762703,34767997,34770395,34773857	0.875000
breast_epithelium_female_adult_51_years	chr9	13616185	13616190	13616185	+	RAMPAGE_only	25	42	114	7.578259	5.923482	chr9	13616016	13616359	LTR|ERVL-MaLR|MLT1A	+	chr9	13551822	13716384	STRG.83154.3	+	13551822,13605328,13623127	13605246,13623019,13716384	0.938596
breast_epithelium_female_adult_51_years	chr3	149284778	149284779	149284778	+	High_confidence	3254	3265	3406	226.417121	6.705142	chr3	149283837	149285090	LTR|ERV1|LTR12C	+	chr3	149284781	149367381	STRG.35006.6	+	149284781,149295462	149295409,149367381	0.955079
breast_epithelium_female_adult_51_years	chr2	29114149	29114174	29114158	+	High_confidence	9	9	60	3.988558	5.369683	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.816667
breast_epithelium_female_adult_51_years	chr2	206161460	206161467	206161460	+	High_confidence	3	5	11	0.731236	2.845351	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	1.000000
breast_epithelium_female_adult_51_years	chr11	77175252	77175267	77175252	+	High_confidence	3	3	11	0.731236	3.277613	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175323	77215191	STRG.99434.1	+	77175323,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353,77197480,77198494,77199648,77201447,77202299,77203059,77204075,77205461,77206096,77207288,77208429,77208696,77211151,77211820,77212951,77213859,77214606	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194524,77197598,77198621,77199818,77201638,77202424,77203217,77204229,77205617,77206202,77207402,77208517,77208803,77211337,77211937,77213035,77213979,77215191	1.000000
breast_epithelium_female_adult_51_years	chr18	27224182	27224194	27224182	+	RAMPAGE_only	3	3	8	0.531808	2.750000	chr18	27223626	27224373	LINE|L1|L1PB1	-	chr18	27225741	27247188	LINC01908|ENST00000583148.1	+	27225741,27234921,27235607,27243612,27247040	27225961,27235002,27235659,27243666,27247188	0.750000
breast_epithelium_female_adult_51_years	chr7	102822458	102822461	102822458	-	High_confidence	27	30	43	2.858466	4.722435	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813208	102822451	STRG.72649.3	-	102813208,102822039,102822382	102813531,102822203,102822451	0.790698
breast_epithelium_female_adult_51_years	chr7	87319198	87319235	87319198	-	High_confidence	4	4	15	0.997139	3.378783	chr7	87318389	87319585	LINE|L1|L1P3	-	chr7	87318392	87318719	STRG.71315.1	-	87318392	87318719	0.733333
breast_epithelium_female_adult_51_years	chr1	43120069	43120148	43120089	+	High_confidence	12	14	58	3.855606	4.851823	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43120035	43156396	STRG.2204.1	+	43120035,43145126,43150760,43152827,43156205	43145004,43148091,43150820,43152931,43156396	0.965517
breast_epithelium_female_adult_51_years	chr9	13527581	13527643	13527642	+	High_confidence	151	151	367	24.396677	6.869951	chr9	13527543	13527664	LINE|L1|L1MC4	-	chr9	13527528	13715985	STRG.83154.1	+	13527528,13553274,13575951,13605328	13527795,13571328,13605246,13715985	0.724796
breast_epithelium_female_adult_51_years	chr12	14190743	14190773	14190772	-	RAMPAGE_only	9	9	26	1.728375	4.136842	chr12	14190529	14190826	SINE|Alu|AluJb	+	chr12	13537336	13980363	GRIN2B|ENST00000609686.3	-	13537336,13567024,13569829,13571803,13608602,13611724,13615113,13615492,13616454,13675744,13753316,13865797,13979927	13564639,13567263,13570017,13571964,13608832,13611850,13615267,13615664,13616657,13675859,13753915,13866226,13980363	0.500000
breast_epithelium_female_adult_51_years	chr12	22636063	22636102	22636063	+	RAMPAGE_only	2	2	10	0.664760	2.721928	chr12	22635924	22636184	SINE|Alu|AluJb	+	chr12	22643888	22661228	ETNK1|ENST00000539974.1	+	22643888,22659013,22661062	22644022,22659154,22661228	0.500000
breast_epithelium_female_adult_51_years	chr16	53445773	53445789	53445780	+	High_confidence	7	7	18	1.196567	3.572431	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.833333
breast_epithelium_female_adult_51_years	chr18	46087038	46087066	46087038	-	High_confidence	2	3	12	0.797712	2.845351	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.916667
breast_epithelium_female_adult_51_years	chr8	65979196	65979197	65979196	+	High_confidence	15	15	20	1.329519	3.921928	chr8	65979005	65979377	LTR|ERVL-MaLR|THE1B	+	chr8	65979215	66076829	STRG.78401.1	+	65979215,66043487,66051530,66076659	65979293,66043611,66051666,66076829	0.650000
breast_epithelium_female_adult_51_years	chr4	38744114	38744129	38744114	+	High_confidence	4	4	8	0.531808	3.000000	chr4	38743635	38744259	LINE|L1|HAL1	+	chr4	38744130	38748493	STRG.40362.2	+	38744130,38745340,38748299	38744267,38745461,38748493	0.875000
breast_epithelium_female_adult_51_years	chr2	201115924	201115932	201115924	+	High_confidence	3	3	6	0.398856	2.584963	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.666667
breast_epithelium_female_adult_51_years	chr6	21258732	21258761	21258732	-	RAMPAGE_only	5	5	18	1.196567	3.690117	chr6	21258614	21259005	LTR|ERVL-MaLR|MLT1J	-	chr6	21232930	21233370	STRG.58683.1	-	21232930	21233370	0.555556
breast_epithelium_female_adult_51_years	chr5	134613031	134613113	134613031	-	High_confidence	10	10	56	3.722654	4.706199	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.607143
breast_epithelium_female_adult_51_years	chr11	7906124	7906135	7906124	-	High_confidence	3	3	8	0.531808	2.750000	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.750000
breast_epithelium_female_adult_51_years	chrX	94600177	94600205	94600177	-	High_confidence	6	6	13	0.864187	3.418296	chrX	94599902	94600549	LTR|ERVL|LTR66	-	chrX	94523120	94600348	STRG.152810.7	-	94523120,94544719,94600106	94529483,94544811,94600348	0.538462
breast_epithelium_female_adult_51_years	chr10	37242774	37242795	37242786	+	RAMPAGE_only	3	4	12	0.797712	3.277613	chr10	37242591	37243134	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr10	37248117	37315801	STRG.91112.15	+	37248117,37261863,37262482,37264529,37314377,37315695	37252396,37261925,37262539,37309328,37314441,37315801	0.833333
breast_epithelium_female_adult_51_years	chr17	6853909	6853950	6853928	+	High_confidence	26	26	94	6.248740	6.062412	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853940	6895482	STRG.128919.2	+	6853940,6854213,6892002,6894317,6894883,6895095,6895342	6854060,6854453,6892075,6894519,6895006,6895199,6895482	0.627660
breast_epithelium_female_adult_51_years	chr11	107441566	107441612	107441590	-	RAMPAGE_only	2	3	10	0.664760	2.725481	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	0.900000
breast_epithelium_female_adult_51_years	chr3	114624916	114625007	114624984	-	High_confidence	7	8	61	4.055034	5.229838	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.622951
breast_epithelium_female_adult_51_years	chr17	10291816	10291823	10291816	+	High_confidence	2	2	11	0.731236	3.121928	chr17	10291623	10291998	LTR|ERVL-MaLR|THE1B	+	chr17	10291850	10497800	STRG.129209.1	+	10291850,10317497,10318454,10320391,10406147,10492466,10492880,10497609,10497763	10291913,10317867,10318549,10320512,10406238,10492624,10492971,10497676,10497800	0.636364
breast_epithelium_female_adult_51_years	chr12	3215196	3215315	3215271	+	RAMPAGE_only	11	11	112	7.445308	5.413396	chr12	3215284	3215474	SINE|MIR|MIRc	+	chr12	3201176	3282108	TSPAN9|ENST00000407263.2	+	3201176,3278420,3278991,3280381,3281197,3281733	3201256,3278612,3279066,3280483,3281329,3282108	0.741071
breast_epithelium_female_adult_51_years	chr11	85811011	85811047	85811011	-	High_confidence	2	2	8	0.531808	2.521641	chr11	85810837	85810962	SINE|MIR|MIR3	-	chr11	85694274	85811129	SYTL2|ENST00000316356.8	-	85694274,85696182,85697978,85700514,85704857,85707428,85709330,85711112,85714412,85718789,85720857,85727895,85733938,85736500,85737574,85745636,85748271,85757624,85810953	85695340,85696388,85698078,85700593,85705028,85707531,85709500,85711232,85714507,85718843,85720959,85727967,85734742,85736615,85737656,85745772,85748423,85758114,85811129	0.750000
breast_epithelium_female_adult_51_years	chr3	120719602	120719622	120719615	-	RAMPAGE_only	4	6	20	1.329519	3.892407	chr3	120719120	120721943	LINE|L1|L1PA4	+	chr3	120686700	120742516	RABL3|ENST00000648525.1	-	120686700,120690448,120694152,120698422,120705999,120709779,120730695,120738549,120742461	120689888,120690487,120694224,120698573,120706114,120709909,120730787,120738667,120742516	0.500000
breast_epithelium_female_adult_51_years	chr6	31587007	31587010	31587009	+	High_confidence	8	14	18	1.196567	3.807764	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.944444
breast_epithelium_female_adult_51_years	chr21	36980958	36980987	36980986	-	High_confidence	4	4	13	0.864187	3.392747	chr21	36980978	36981177	LINE|L2|L2b	+	chr21	36750887	36980964	HLCS|ENST00000612277.4	-	36750887,36756541,36759726,36765011,36767217,36896859,36930250,36936448,36938831,36946008,36962035,36980783	36754417,36756755,36759841,36765172,36767285,36897131,36930433,36937392,36938994,36946154,36962170,36980964	1.000000
breast_epithelium_female_adult_51_years	chr7	80369531	80369569	80369531	+	High_confidence	7	7	17	1.130091	3.690117	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	1.000000
breast_epithelium_female_adult_51_years	chr1	171251807	171251857	171251849	-	High_confidence	7	7	45	2.991418	5.002964	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171118983	171251847	STRG.8862.3	-	171118983,171168103,171251522	171121863,171168188,171251847	0.600000
breast_epithelium_female_adult_51_years	chr2	73072182	73072194	73072193	-	High_confidence	7	7	12	0.797712	3.459432	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.666667
breast_epithelium_female_adult_51_years	chr11	67848682	67848702	67848701	-	High_confidence	23	23	91	6.049312	5.547316	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67845086	67848697	STRG.98989.1	-	67845086,67848565	67847989,67848697	0.791209
breast_epithelium_female_adult_51_years	chr11	65440842	65440912	65440842	+	RAMPAGE_only	4	7	30	1.994279	3.481728	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
breast_epithelium_female_adult_51_years	chr16	27286217	27286234	27286233	+	High_confidence	6	6	12	0.797712	3.418296	chr16	27285896	27286308	LTR|ERVL-MaLR|MLT1G	-	chr16	27286204	27286849	STRG.126086.1	+	27286204	27286849	0.666667
breast_epithelium_female_adult_51_years	chr19	51976292	51976293	51976292	+	RAMPAGE_only	20	21	22	1.462471	3.784942	chr19	51976151	51976436	LTR|ERVK|LTR3A	+	chr19	51949161	51981367	ZNF350-AS1|ENST00000595010.1	+	51949161,51976390,51980926	51949235,51976573,51981367	0.500000
breast_epithelium_female_adult_51_years	chr3	104523272	104523279	104523277	-	RAMPAGE_only	4	6	14	0.930663	3.467720	chr3	104522908	104523406	LTR|ERV1|LTR49-int	-	chr3	104334231	104362732	STRG.32470.2	-	104334231	104362732	0.571429
breast_epithelium_female_adult_51_years	chr6	144564129	144564130	144564129	+	RAMPAGE_only	11	11	14	0.930663	3.324863	chr6	144564039	144564485	LINE|L2|L2a	-	chr6	144583209	144851003	UTRN|ENST00000367526.8	+	144583209,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144583600,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144851003	0.571429
breast_epithelium_female_adult_51_years	chr11	64242523	64242547	64242546	+	High_confidence	4	4	15	0.997139	3.324863	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.933333
breast_epithelium_female_adult_51_years	chr8	115547979	115548005	115548004	-	RAMPAGE_only	5	5	11	0.731236	3.121928	chr8	115547948	115548224	SINE|Alu|AluJb	+	chr8	115414428	115668702	STRG.80979.1	-	115414428,115418329,115438789,115461275,115476318,115499964,115603872,115619131,115668544	115415084,115438718,115461251,115475989,115499943,115587604,115605002,115623758,115668702	0.909091
breast_epithelium_female_adult_51_years	chr21	34737110	34737111	34737110	-	RAMPAGE_only	10	10	10	0.664760	2.921928	chr21	34736861	34737522	LINE|L1|L1ME4b	-	chr21	34732712	34733622	STRG.145489.1	-	34732712	34733622	0.500000
breast_epithelium_female_adult_51_years	chr6	71291239	71291310	71291239	+	High_confidence	3	3	19	1.263043	3.826875	chr6	71290785	71291650	LINE|L2|L2	-	chr6	71291361	71293612	OGFRL1|ENST00000467503.1	+	71291361,71293292,71293532	71292020,71293379,71293612	0.842105
breast_epithelium_female_adult_51_years	chr14	38948211	38948246	38948236	-	High_confidence	3	4	14	0.930663	3.235926	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38838888	38948237	LINC00639|ENST00000556116.1	-	38838888,38941519,38948177	38839204,38941695,38948237	0.857143
breast_epithelium_female_adult_51_years	chr4	184382294	184382295	184382294	-	High_confidence	12	12	16	1.063615	3.327820	chr4	184382179	184382738	LTR|ERVL|LTR67B	+	chr4	184372406	184382306	LINC02362|ENST00000608785.1	-	184372406,184376440,184378964,184382133	184372480,184376544,184379129,184382306	0.750000
breast_epithelium_female_adult_51_years	chr10	110881128	110881149	110881148	+	High_confidence	4	7	15	0.997139	3.378783	chr10	110881075	110881155	DNA|TcMar-Mariner|MADE2	+	chr10	110880318	110887798	PDCD4|ENST00000492932.5	+	110880318,110881232,110883002,110885252,110887664	110880485,110881535,110883097,110885366,110887798	0.866667
breast_epithelium_female_adult_51_years	chr2	88784865	88784891	88784865	+	RAMPAGE_only	2	3	8	0.531808	2.750000	chr2	88784858	88784980	DNA|hAT-Charlie|MER5A1	-	chr2	88782730	88806404	STRG.18373.3	+	88782730,88782852,88784597,88784720,88786469,88786590,88788317,88788441,88792420,88801098,88804379,88804786,88805378	88782762,88782925,88784626,88784926,88786498,88786663,88788346,88788514,88792494,88801305,88804450,88804880,88806404	1.000000
breast_epithelium_female_adult_51_years	chr8	115533821	115533834	115533833	-	RAMPAGE_only	4	5	8	0.531808	2.521641	chr8	115533655	115534008	LTR|ERVL-MaLR|MLT1A	-	chr8	115414428	115668702	STRG.80979.1	-	115414428,115418329,115438789,115461275,115476318,115499964,115603872,115619131,115668544	115415084,115438718,115461251,115475989,115499943,115587604,115605002,115623758,115668702	0.875000
breast_epithelium_female_adult_51_years	chr15	93863065	93863076	93863065	+	High_confidence	4	4	8	0.531808	2.807355	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.750000
breast_epithelium_female_adult_51_years	chr7	30573317	30573343	30573317	-	High_confidence	2	3	7	0.465332	2.521641	chr7	30572870	30573848	LTR|ERV1|LOR1-int	-	chr7	30564143	30573148	GARS-DT|ENST00000614950.4	-	30564143,30568832,30572999	30564255,30568989,30573148	0.857143
breast_epithelium_female_adult_51_years	chr10	37295399	37295488	37295399	+	RAMPAGE_only	9	11	62	4.121510	4.756995	chr10	37295285	37295693	LINE|L2|L2	-	chr10	37248117	37315801	STRG.91112.15	+	37248117,37261863,37262482,37264529,37314377,37315695	37252396,37261925,37262539,37309328,37314441,37315801	0.967742
breast_epithelium_female_adult_51_years	chr3	4887090	4887113	4887090	-	RAMPAGE_only	2	2	7	0.465332	2.521641	chr3	4886955	4887375	LINE|L2|L2b	+	chr3	4814296	4885788	AC018816.1|ENST00000449914.5	-	4814296,4825745,4830946,4885722	4814431,4825862,4831018,4885788	0.571429
breast_epithelium_female_adult_51_years	chr3	33864090	33864126	33864090	+	RAMPAGE_only	2	2	12	0.797712	3.418296	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.916667
breast_epithelium_female_adult_51_years	chr3	149274041	149274065	149274041	-	RAMPAGE_only	3	5	11	0.731236	3.321928	chr3	149273971	149274029	LINE|L2|L2c	-	chr3	149229444	149271833	STRG.34993.4	-	149229444,149230738,149241361,149244253,149245662,149247367,149249021,149254117,149255929,149256396,149257457,149266865,149269819,149270749	149229687,149230901,149241501,149244455,149245769,149247496,149253058,149254268,149256141,149256537,149257589,149267037,149270062,149271833	0.545455
breast_epithelium_female_adult_51_years	chr6	18759510	18759513	18759512	-	RAMPAGE_only	6	8	11	0.731236	2.721928	chr6	18756399	18759477	LTR|ERV1|HERVH-int	-	chr6	18737437	18757539	STRG.58479.1	-	18737437,18744047,18748088,18757252	18741550,18746952,18748154,18757539	0.727273
breast_epithelium_female_adult_51_years	chr19	21440639	21440675	21440669	-	RAMPAGE_only	18	25	109	7.245880	5.801358	chr19	21440180	21440667	LTR|ERV1|HERV3-int	-	chr19	21429602	21443687	STRG.137980.1	-	21429602,21440414	21433947,21443687	0.880734
breast_epithelium_female_adult_51_years	chr10	37295564	37295630	37295564	+	RAMPAGE_only	3	3	33	2.193707	3.471159	chr10	37295285	37295693	LINE|L2|L2	-	chr10	37248117	37315801	STRG.91112.15	+	37248117,37261863,37262482,37264529,37314377,37315695	37252396,37261925,37262539,37309328,37314441,37315801	0.939394
breast_epithelium_female_adult_51_years	chr6	18757582	18757604	18757603	-	High_confidence	5	5	13	0.864187	3.700440	chr6	18756399	18759477	LTR|ERV1|HERVH-int	-	chr6	18737437	18757539	STRG.58479.1	-	18737437,18744047,18748088,18757252	18741550,18746952,18748154,18757539	0.923077
breast_epithelium_female_adult_51_years	chr1	202551686	202551731	202551709	+	RAMPAGE_only	3	3	12	0.797712	3.459432	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202511067	202596983	STRG.10386.11	+	202511067,202562777,202564442,202567777,202569146	202558893,202562922,202564547,202567831,202596983	0.916667
breast_epithelium_female_adult_51_years	chr11	58578102	58578156	58578102	-	High_confidence	32	38	130	8.641875	5.960840	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58538000	58578166	STRG.98111.4	-	58538000,58549972,58564154,58570555,58576733	58549867,58554940,58564201,58570713,58578166	0.961538
breast_epithelium_female_adult_51_years	chr7	120395828	120395834	120395828	+	High_confidence	5	5	11	0.731236	2.663533	chr7	120395466	120395936	LTR|ERV1|MER66C	-	chr7	120395218	120397477	STRG.73592.1	+	120395218	120397477	0.545455
breast_epithelium_female_adult_51_years	chr13	60410080	60410081	60410080	+	RAMPAGE_only	19	19	19	1.263043	4.142664	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60397830	60573864	TDRD3|ENST00000648252.1	+	60397830,60400255,60402717,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573615	60398631,60400292,60402815,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573864	0.947368
breast_epithelium_female_adult_51_years	chr17	44019404	44019415	44019414	-	High_confidence	3	5	7	0.465332	2.521641	chr17	44019061	44019706	LTR|ERVL|LTR66	-	chr17	44014489	44019442	TMEM101|ENST00000586174.1	-	44014489,44014815,44019237	44014537,44015155,44019442	0.571429
breast_epithelium_female_adult_51_years	chr17	2975621	2975682	2975621	+	RAMPAGE_only	13	13	66	4.387413	5.437752	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2904989	3008090	STRG.128774.2	+	2904989,2957758,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010	2905368,2957794,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008090	0.787879
breast_epithelium_female_adult_51_years	chr17	82076525	82076526	82076525	-	RAMPAGE_only	6	6	6	0.398856	2.584963	chr17	82076254	82076887	LINE|L1|L1MEc	-	chr17	81511345	81523847	ACTG1|ENST00000575994.5	-	81511345,81511902,81512231,81523641	81511626,81512142,81512360,81523847	1.000000
breast_epithelium_female_adult_51_years	chr19	40042782	40042815	40042782	-	RAMPAGE_only	4	4	18	1.196567	3.947703	chr19	40037915	40044054	LINE|L1|L1PA4	-	chr19	40037958	40056156	STRG.138833.16	-	40037958,40048669,40050323,40055415	40047470,40048796,40050377,40056156	1.000000
breast_epithelium_female_adult_51_years	chr3	104523707	104523740	104523724	-	High_confidence	14	14	65	4.320937	4.703648	chr3	104523444	104523995	LTR|ERV1|LTR49	-	chr3	104518467	104523767	STRG.32470.5	-	104518467,104523248	104522795,104523767	0.938462
breast_epithelium_female_adult_51_years	chr6	87213731	87213764	87213741	+	RAMPAGE_only	10	12	64	4.254461	5.268880	chr6	87213283	87213856	LTR|ERV1|LTR10A	-	chr6	87204581	87243567	STRG.62121.5	+	87204581,87215902,87216298,87218595,87230669,87243474	87215142,87216057,87216377,87229477,87233527,87243567	0.906250
breast_epithelium_female_adult_51_years	chr9	94640294	94640319	94640318	-	High_confidence	3	3	8	0.531808	2.521641	chr9	94640267	94640989	LINE|L2|L2a	-	chr9	94603132	94640249	FBP1|NM_001127628.1	-	94603132,94605456,94606814,94609920,94617767,94620328,94639140,94640043	94603572,94605576,94606952,94610061,94617860,94620491,94639334,94640249	0.875000
breast_epithelium_female_adult_51_years	chr14	81427431	81427445	81427431	-	High_confidence	2	2	8	0.531808	2.807355	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.875000
breast_epithelium_female_adult_51_years	chr8	80485592	80485619	80485592	+	High_confidence	20	20	38	2.526086	4.702565	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.631579
breast_epithelium_female_adult_51_years	chr14	82642621	82642628	82642621	+	High_confidence	4	7	16	1.063615	3.773557	chr14	82642501	82642782	LTR|ERV1|MER61B	+	chr14	82642619	82651657	LINC02301|ENST00000555798.1	+	82642619,82650923	82642674,82651657	0.500000
breast_epithelium_female_adult_51_years	chr1	19344388	19344410	19344388	-	RAMPAGE_only	7	7	18	1.196567	3.734522	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.944444
breast_epithelium_female_adult_51_years	chr3	151928075	151928178	151928177	-	High_confidence	22	23	152	10.104346	6.392387	chr3	151927972	151929469	LTR|ERV1|LTR12C	+	chr3	151751178	151928175	AADACL2-AS1|NR_110202.1	-	151751178,151755071,151774605,151927856	151751511,151755131,151774665,151928175	0.638158
breast_epithelium_female_adult_51_years	chr10	37288481	37288516	37288481	+	RAMPAGE_only	2	2	13	0.864187	3.546594	chr10	37285722	37289009	LINE|L1|L1PA10	-	chr10	37248117	37315801	STRG.91112.15	+	37248117,37261863,37262482,37264529,37314377,37315695	37252396,37261925,37262539,37309328,37314441,37315801	1.000000
breast_epithelium_female_adult_51_years	chr13	45379837	45379838	45379837	+	High_confidence	5	6	8	0.531808	2.807355	chr13	45379416	45380004	LTR|ERV1|HERVE-int	-	chr13	45379283	45391157	TPT1-AS1|ENST00000519454.5	+	45379283,45379925,45383090,45383759,45389734,45390757,45391031	45379335,45380001,45383235,45383838,45389820,45390902,45391157	0.750000
breast_epithelium_female_adult_51_years	chr10	89888015	89888038	89888015	+	RAMPAGE_only	3	3	10	0.664760	2.947703	chr10	89888002	89888814	LTR|ERV1|LTR8B	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.600000
breast_epithelium_female_adult_51_years	chr19	51795144	51795184	51795144	+	High_confidence	2	2	10	0.664760	2.947703	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795145	51826190	FPR3|NM_002030.4	+	51795145,51823738	51795331,51826190	0.900000
breast_epithelium_female_adult_51_years	chr8	116648815	116648905	116648847	-	RAMPAGE_only	3	4	21	1.395995	4.142664	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.904762
breast_epithelium_female_adult_51_years	chr2	201790499	201790539	201790506	+	High_confidence	6	6	19	1.263043	3.681881	chr2	201790433	201790802	LINE|L2|L2-3_Crp	-	chr2	201790471	201807938	CDK15|ENST00000493754.5	+	201790471,201806428,201807493,201807852	201790660,201806547,201807643,201807938	0.526316
breast_epithelium_female_adult_51_years	chr5	32584841	32584842	32584841	+	High_confidence	8	8	8	0.531808	3.000000	chr5	32584793	32584926	SINE|MIR|MIR	+	chr5	32585498	32604079	SUB1|ENST00000265073.8	+	32585498,32588511,32591562,32598960,32601004	32585625,32588584,32591685,32599069,32604079	1.000000
breast_epithelium_female_adult_51_years	chr22	38168075	38168093	38168092	-	High_confidence	7	7	17	1.130091	3.625000	chr22	38167963	38168270	LINE|L2|L2b	+	chr22	38143236	38168090	PLA2G6|ENST00000452972.1	-	38143236,38144895,38145437,38167917	38143288,38144978,38145653,38168090	0.705882
breast_epithelium_female_adult_51_years	chrX	120143500	120143501	120143500	+	High_confidence	18	18	18	1.196567	3.947703	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120143514	120146855	STRG.153727.1	+	120143514,120145637	120143900,120146855	0.944444
breast_epithelium_female_adult_51_years	chr4	102431244	102431248	102431247	-	High_confidence	7	7	15	0.997139	3.378783	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.933333
breast_epithelium_female_adult_51_years	chr15	42404759	42404776	42404759	+	High_confidence	30	31	85	5.650457	5.552885	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404778	42412315	CAPN3|ENST00000337571.8	+	42404778,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412315	0.658824
breast_epithelium_female_adult_51_years	chr3	135965670	135965749	135965723	+	High_confidence	70	121	561	37.293014	6.712990	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.985740
breast_epithelium_female_adult_51_years	chr4	142474920	142474921	142474920	-	High_confidence	8	8	9	0.598284	3.000000	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.777778
breast_epithelium_female_adult_51_years	chr7	6590246	6590272	6590269	+	High_confidence	5	5	21	1.395995	3.880180	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.666667
breast_epithelium_female_adult_51_years	chr1	174874418	174874454	174874418	+	High_confidence	102	114	397	26.390956	7.130809	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.639798
breast_epithelium_female_adult_51_years	chr13	98988460	98988461	98988460	-	RAMPAGE_only	34	36	36	2.393135	3.981297	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98793486	98978084	DOCK9|NM_001130048.1	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,98977783	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,98978084	0.805556
breast_epithelium_female_adult_51_years	chr19	49086488	49086547	49086520	+	High_confidence	23	39	127	8.442447	5.356840	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.960630
breast_epithelium_female_adult_51_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	10	10	10	0.664760	2.921928	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
breast_epithelium_female_adult_51_years	chr8	134820646	134820673	134820646	-	RAMPAGE_only	2	3	9	0.598284	2.500000	chr8	134820464	134820792	LTR|ERVL-MaLR|MLT1I	-	chr8	134792019	134832302	STRG.82211.1	-	134792019,134813831	134813799,134832302	0.888889
breast_epithelium_female_adult_51_years	chr3	33838256	33838257	33838256	+	RAMPAGE_only	4	5	6	0.398856	2.584963	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.833333
breast_epithelium_female_adult_51_years	chr11	96261268	96261292	96261291	-	RAMPAGE_only	2	2	7	0.465332	2.584963	chr11	96261030	96261429	LTR|ERVL-MaLR|MSTC	+	chr11	96154960	96343180	STRG.100778.3	-	96154960,96155531	96155509,96343180	0.857143
breast_epithelium_female_adult_51_years	chr7	152460665	152460692	152460665	-	RAMPAGE_only	6	6	11	0.731236	3.459432	chr7	152460557	152460804	LINE|L2|L2a	-	chr7	152308735	152436566	STRG.75631.12	-	152308735,152311797,152315137,152330600,152358586,152435625,152436511	152310075,152311946,152315338,152330739,152358675,152435787,152436566	0.727273
breast_epithelium_female_adult_51_years	chr3	189121331	189121349	189121331	+	RAMPAGE_only	3	3	7	0.465332	2.521641	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.857143
breast_epithelium_female_adult_51_years	chr21	28090363	28090410	28090409	+	High_confidence	4	4	11	0.731236	3.095795	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	1.000000
breast_epithelium_female_adult_51_years	chr6	43013392	43013393	43013392	-	High_confidence	17	17	22	1.462471	4.095795	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
breast_epithelium_female_adult_51_years	chr11	93734882	93734898	93734882	-	High_confidence	3	3	6	0.398856	2.584963	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730282	93734661	TAF1D|ENST00000525928.5	-	93730282,93730676,93731149,93731752,93732243,93733086,93733349	93730447,93730712,93731216,93731799,93732291,93733121,93734661	0.833333
breast_epithelium_female_adult_51_years	chr14	91883347	91883350	91883349	-	RAMPAGE_only	6	8	11	0.731236	2.846439	chr14	91883123	91883337	LINE|CR1|L3	-	chr14	91870042	91947074	FBLN5|ENST00000556154.5	-	91870042,91877486,91881291,91882953,91887192,91891220,91894949,91936946,91940564,91942906,91946710	91870385,91877682,91881418,91883076,91887312,91891337,91895072,91937201,91940616,91942961,91947074	0.727273
breast_epithelium_female_adult_51_years	chr5	126600248	126600249	126600248	+	High_confidence	9	11	11	0.731236	3.277613	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	1.000000
breast_epithelium_female_adult_51_years	chr3	149277622	149277677	149277622	-	High_confidence	31	35	70	4.653317	5.369111	chr3	149277531	149277647	LINE|L2|L2c	+	chr3	149229444	149277662	STRG.34993.3	-	149229444,149230738,149241361,149244253,149245662,149247367,149249021,149252845,149255929,149256396,149257457,149266865,149269819,149270749,149273502,149273999,149275462,149276509	149229687,149230901,149241501,149244455,149245769,149247496,149250169,149254268,149256141,149256537,149257589,149267037,149270062,149270920,149273715,149274268,149275702,149277662	0.957143
breast_epithelium_female_adult_51_years	chr9	121313944	121314021	121314002	+	RAMPAGE_only	11	12	62	4.121510	4.630985	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
breast_epithelium_female_adult_51_years	chr8	27977120	27977126	27977125	-	RAMPAGE_only	19	20	33	2.193707	4.116729	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.696970
breast_epithelium_female_adult_51_years	chr21	28048446	28048447	28048446	+	High_confidence	11	11	12	0.797712	2.732159	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.916667
breast_epithelium_female_adult_51_years	chr17	19386333	19386360	19386333	-	High_confidence	3	4	9	0.598284	2.503258	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	1.000000
breast_epithelium_female_adult_51_years	chr6	28354199	28354206	28354205	-	High_confidence	4	4	8	0.531808	2.750000	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28326294	28354273	STRG.59086.5	-	28326294,28327382,28329302,28353861	28326854,28327533,28329714,28354273	0.625000
breast_epithelium_female_adult_51_years	chr14	81192577	81192593	81192577	-	RAMPAGE_only	3	3	7	0.465332	2.584963	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.857143
breast_epithelium_female_adult_51_years	chr21	42955784	42955818	42955786	-	High_confidence	6	8	28	1.861327	4.593069	chr21	42955408	42955905	LTR|ERV1|HERVE-int	-	chr21	42955206	42955760	STRG.146148.1	-	42955206,42955689	42955584,42955760	0.964286
breast_epithelium_female_adult_51_years	chr21	29077486	29077517	29077486	+	High_confidence	22	22	47	3.124370	4.575865	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.765957
breast_epithelium_female_adult_51_years	chr6	18757326	18757356	18757355	-	High_confidence	9	11	33	2.193707	4.476410	chr6	18756399	18759477	LTR|ERV1|HERVH-int	-	chr6	18737437	18757539	STRG.58479.1	-	18737437,18744047,18748088,18757252	18741550,18746952,18748154,18757539	0.818182
breast_epithelium_female_adult_51_years	chr1	88887267	88887297	88887267	-	RAMPAGE_only	2	2	9	0.598284	2.725481	chr1	88886926	88887218	SINE|Alu|AluSx1	-	chr1	88853223	88891496	GTF2B|ENST00000448623.5	-	88853223,88857372,88859881,88860139,88863980,88887260,88891482	88853346,88857487,88860011,88860286,88864114,88887367,88891496	1.000000
breast_epithelium_female_adult_51_years	chr7	150323728	150323751	150323750	-	High_confidence	5	6	10	0.664760	3.121928	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	1.000000
breast_epithelium_female_adult_51_years	chr21	36005313	36005320	36005313	+	High_confidence	10	12	19	1.263043	3.787144	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.947368
breast_epithelium_female_adult_51_years	chr15	92914950	92914974	92914973	+	High_confidence	30	31	112	7.445308	6.000759	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.750000
breast_epithelium_female_adult_51_years	chr10	37191863	37191898	37191863	+	RAMPAGE_only	15	20	55	3.656178	4.767279	chr10	37191713	37191945	SINE|Alu|AluYh3	+	chr10	37167570	37315801	STRG.91112.11	+	37167570,37169529,37169651,37173711,37173838,37176156,37177665,37181321,37181443,37185512,37185639,37187957,37189466,37193063,37193185,37197280,37197407,37199726,37201234,37216180,37218979,37231460,37232498,37235794,37241170,37242757,37248117,37252247,37262482,37264529,37309096,37314377,37315695	37169249,37169558,37169724,37173740,37175775,37176218,37180798,37181350,37181516,37185541,37185712,37188019,37189557,37193092,37193258,37197309,37197480,37199788,37201325,37216394,37219897,37231680,37232567,37241016,37241273,37242847,37248620,37261925,37262539,37264637,37309328,37314441,37315801	0.745455
breast_epithelium_female_adult_51_years	chr4	69051362	69051431	69051378	+	High_confidence	7	7	50	3.323798	5.253661	chr4	69051337	69051715	LTR|ERV1|Harlequin-int	+	chr4	69051362	69108227	UGT2B7|ENST00000502942.5	+	69051362,69089471,69098539,69102806,69107174,69108102	69051602,69089603,69098688,69102938,69107262,69108227	0.560000
breast_epithelium_female_adult_51_years	chr8	119875413	119875416	119875415	+	RAMPAGE_only	8	17	21	1.395995	3.826875	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.857143
breast_epithelium_female_adult_51_years	chr4	41359606	41359607	41359606	+	High_confidence	221	226	260	17.283750	5.907687	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.815385
breast_epithelium_female_adult_51_years	chr17	2667103	2667196	2667195	+	High_confidence	4	4	20	1.329519	3.921928	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.900000
breast_epithelium_female_adult_51_years	chr10	45000453	45000524	45000503	+	High_confidence	6	6	38	2.526086	4.781036	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.921053
breast_epithelium_female_adult_51_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	18	18	18	1.196567	3.905765	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
breast_epithelium_female_adult_51_years	chr17	69248808	69248848	69248847	-	High_confidence	15	15	33	2.193707	4.413716	chr17	69248697	69249025	SINE|Alu|AluJb	-	chr17	69247375	69249141	ABCA5|ENST00000586601.1	-	69247375,69248261	69247644,69249141	0.939394
breast_epithelium_female_adult_51_years	chr1	183590887	183590911	183590910	-	High_confidence	5	5	14	0.930663	3.180833	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.785714
breast_epithelium_female_adult_51_years	chr19	571754	571778	571754	-	High_confidence	2	2	11	0.731236	2.721928	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.818182
breast_epithelium_female_adult_51_years	chr12	52118139	52118183	52118139	-	High_confidence	3	3	14	0.930663	3.392747	chr12	52116006	52118404	LTR|ERV1|HERVE-int	-	chr12	52117211	52118174	STRG.106157.1	-	52117211	52118174	0.857143
breast_epithelium_female_adult_51_years	chr12	9065162	9065178	9065167	+	High_confidence	2	2	10	0.664760	2.641604	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.800000
breast_epithelium_female_adult_51_years	chr4	142601100	142601122	142601110	-	RAMPAGE_only	10	10	25	1.661899	4.262692	chr4	142597986	142601688	LINE|L1|L1PA11	+	chr4	142086178	142560669	INPP4B|ENST00000510812.5	-	142086178,142108092,142112541,142122127,142123291,142124587,142145839,142160357,142173631,142193086,142208424,142208895,142237863,142260491,142270662,142305457,142314711,142402937,142405205,142429172,142431168,142462662,142560456	142086256,142108190,142112682,142122245,142123415,142124760,142145996,142160561,142173809,142193195,142208529,142209026,142238011,142260564,142270774,142305537,142314762,142403054,142405324,142429217,142431385,142462726,142560669	0.520000
breast_epithelium_female_adult_51_years	chr6	26956533	26956554	26956544	-	High_confidence	11	11	26	1.728375	4.483856	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.807692
breast_epithelium_female_adult_51_years	chr5	55982772	55982800	55982772	-	High_confidence	2	2	6	0.398856	2.584963	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	1.000000
breast_epithelium_female_adult_51_years	chr1	209429033	209429087	209429072	+	High_confidence	4	4	19	1.263043	3.350209	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429082	209430621	MIR205HG|ENST00000444286.1	+	209429082,209430424	209429408,209430621	0.842105
breast_epithelium_female_adult_51_years	chr3	9109603	9109653	9109623	-	RAMPAGE_only	4	4	10	0.664760	3.121928	chr3	9109543	9109955	LINE|L2|L2c	-	chr3	9006978	9124977	SRGAP3|ENST00000618999.4	-	9006978,9010307,9013307,9013736,9014741,9015596,9025260,9026934,9028099,9032649,9038062,9047390,9049260,9053026,9056232,9058250,9060230,9064395,9080024,9104679,9124724	9008347,9010387,9013535,9013842,9014841,9015731,9025338,9026995,9028130,9032752,9038090,9047475,9049469,9053224,9056334,9058472,9060359,9064581,9080087,9104842,9124977	0.600000
breast_epithelium_female_adult_51_years	chr8	2727224	2727264	2727253	+	High_confidence	8	8	31	2.060755	4.582119	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.741935
breast_epithelium_female_adult_51_years	chr10	102449836	102449845	102449844	+	High_confidence	6	6	16	1.063615	3.875000	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449838	102455883	STRG.93984.1	+	102449838,102450186,102452089,102455336	102450022,102451018,102452187,102455883	0.937500
breast_epithelium_female_adult_51_years	chr7	131108707	131108708	131108707	-	RAMPAGE_only	28	28	29	1.927803	4.280395	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944159	131109916	LINC-PINT|NR_109854.1	-	130944159,130945719,130984052,131052424,131107719,131109736	130944889,130945791,130984109,131052555,131108803,131109916	0.965517
breast_epithelium_female_adult_51_years	chr5	44752945	44752951	44752950	+	High_confidence	26	27	41	2.725514	4.836434	chr5	44752754	44753114	LTR|ERVL-MaLR|THE1B	+	chr5	44752948	44765744	AC093297.1|ENST00000511712.1	+	44752948,44762085,44765313	44753031,44762162,44765744	0.658537
breast_epithelium_female_adult_51_years	chr6	109714069	109714111	109714110	+	High_confidence	103	113	312	20.740500	5.882981	chr6	109711420	109714446	LINE|L1|L1PA13	-	chr6	109713609	109802227	STRG.63070.2	+	109713609,109715077,109716444,109727108,109732636,109735149,109738324,109741443,109743109,109743674,109760249,109762090,109763936,109765012,109766728,109776921,109784969,109786301,109789593,109791375,109792581,109796764	109714191,109715176,109716568,109727265,109732687,109735298,109738453,109741544,109743272,109743772,109760383,109762207,109763982,109765161,109766895,109777060,109785028,109786449,109789677,109791571,109792664,109802227	0.945513
breast_epithelium_female_adult_51_years	chr19	54617128	54617131	54617130	+	High_confidence	3	5	8	0.531808	2.521641	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.625000
breast_epithelium_female_adult_51_years	chr2	131553010	131553011	131553010	+	RAMPAGE_only	50	50	50	3.323798	5.188758	chr2	131552233	131553018	LINE|L1|L1PB1	-	chr2	131544924	131656426	STRG.20199.1	+	131544924,131553012,131555071,131557350,131564860,131577507,131580151,131582017,131591801,131596773,131597047,131600004,131601422,131604017,131609381,131611132,131612985,131638576	131545201,131553166,131555184,131557463,131575207,131577614,131580264,131582129,131592104,131596888,131597221,131600111,131601556,131604088,131609452,131611709,131613103,131656426	0.920000
breast_epithelium_female_adult_51_years	chr2	43277312	43277318	43277317	-	High_confidence	4	5	8	0.531808	3.000000	chr2	43277189	43277438	LINE|L2|L2	+	chr2	43231206	43277301	THADA|ENST00000467668.1	-	43231206,43232712,43277226	43231343,43232882,43277301	0.500000
breast_epithelium_female_adult_51_years	chr3	134485387	134485471	134485443	-	High_confidence	9	10	56	3.722654	4.853732	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.928571
breast_epithelium_female_adult_51_years	chrX	71198195	71198196	71198195	-	High_confidence	5	5	7	0.465332	2.584963	chrX	71198068	71198187	SINE|MIR|MIR3	-	chrX	71183558	71198175	AL590764.1|ENST00000450860.1	-	71183558,71197908	71184017,71198175	0.857143
breast_epithelium_female_adult_51_years	chr2	207662375	207662376	207662375	+	High_confidence	20	20	20	1.329519	3.821928	chr2	207662277	207662604	LTR|ERVL-MaLR|MLT1A1	+	chr2	207662374	207667024	LINC01857|ENST00000429730.1	+	207662374,207666680	207662522,207667024	0.950000
breast_epithelium_female_adult_51_years	chr3	195689355	195689361	195689355	+	High_confidence	2	2	7	0.465332	2.584963	chr3	195689376	195689522	LINE|L1|L1MC5a	+	chr3	195689377	195708807	MUC20-OT1|ENST00000451216.6	+	195689377,195689545,195708133,195708428,195708746	195689438,195689608,195708268,195708513,195708807	0.571429
breast_epithelium_female_adult_51_years	chr14	23636366	23636367	23636366	+	High_confidence	26	26	32	2.127231	4.226410	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	0.875000
breast_epithelium_female_adult_51_years	chr19	20154909	20154954	20154952	+	RAMPAGE_only	24	31	65	4.320937	5.383756	chr19	20154965	20156337	LTR|ERV1|HERVH-int	+	chr19	20153588	20161741	STRG.137778.2	+	20153588,20154793,20161196	20153893,20155111,20161741	0.846154
breast_epithelium_female_adult_51_years	chr4	175063801	175063817	175063816	-	RAMPAGE_only	6	6	15	0.997139	3.807355	chr4	175063707	175064454	LINE|L1|L1PREC2	-	chr4	174989452	174993894	STRG.47153.1	-	174989452,174993818	174990145,174993894	0.533333
breast_epithelium_female_adult_51_years	chr7	154928480	154928504	154928503	+	High_confidence	39	39	90	5.982836	5.469566	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.977778
breast_epithelium_female_adult_51_years	chr4	73144750	73144781	73144750	-	RAMPAGE_only	2	2	10	0.664760	2.725481	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.700000
breast_epithelium_female_adult_51_years	chr3	9986881	9986899	9986887	+	High_confidence	5	6	14	0.930663	3.700440	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.571429
breast_epithelium_female_adult_51_years	chr19	10555125	10555148	10555125	-	RAMPAGE_only	5	5	10	0.664760	2.646439	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	1.000000
breast_epithelium_female_adult_51_years	chr4	187408762	187408783	187408773	+	RAMPAGE_only	5	6	20	1.329519	3.787144	chr4	187402177	187408891	LINE|L1|L1PA7	-	chr4	187413846	187414256	STRG.47878.1	+	187413846	187414256	0.500000
breast_epithelium_female_adult_51_years	chr7	138097607	138097615	138097607	+	RAMPAGE_only	2	2	10	0.664760	3.169925	chr7	138097260	138097636	LTR|ERVL|LTR16A2	-	chr7	138076476	138117986	AKR1D1|ENST00000242375.7	+	138076476,138088600,138091767,138097865,138105306,138106607,138107414,138113689,138116619	138076611,138088768,138091884,138097943,138105429,138106717,138107580,138113772,138117986	0.900000
breast_epithelium_female_adult_51_years	chr1	43537878	43537920	43537897	+	High_confidence	5	5	21	1.395995	4.221928	chr1	43537916	43538017	LINE|L2|L2a	+	chr1	43538197	43580078	PTPRF|ENST00000372405.1	+	43538197,43545030,43553491,43553799,43569589,43578809	43538277,43545166,43553637,43553941,43569778,43580078	0.904762
breast_epithelium_female_adult_51_years	chr11	8138593	8138614	8138593	-	High_confidence	2	2	13	0.864187	3.251629	chr11	8138547	8139126	LTR|ERV1|LTR10C	+	chr11	8110243	8138559	RIC3|ENST00000524799.5	-	8110243,8110658,8126658,8137377,8138271	8110407,8111137,8126804,8137471,8138559	0.615385
breast_epithelium_female_adult_51_years	chr11	90251203	90251205	90251204	+	High_confidence	4	7	8	0.531808	2.807355	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.625000
breast_epithelium_female_adult_51_years	chr4	14877463	14877503	14877471	-	High_confidence	3	3	10	0.664760	3.321928	chr4	14877247	14877682	LINE|L2|L2c	+	chr4	14687870	14877604	STRG.39477.3	-	14687870,14859542,14877258	14700781,14859616,14877604	0.500000
breast_epithelium_female_adult_51_years	chr5	109383494	109383516	109383494	-	High_confidence	2	2	9	0.598284	3.000000	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.888889
breast_epithelium_female_adult_51_years	chr11	64226142	64226180	64226158	-	High_confidence	50	53	260	17.283750	7.027183	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.980769
breast_epithelium_female_adult_51_years	chr7	134432378	134432451	134432435	-	High_confidence	4	4	19	1.263043	3.681881	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.736842
breast_epithelium_female_adult_51_years	chr16	70590308	70590335	70590308	+	RAMPAGE_only	2	2	8	0.531808	2.521641	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.625000
breast_epithelium_female_adult_51_years	chr2	121902533	121902534	121902533	+	High_confidence	8	8	10	0.664760	2.947703	chr2	121902488	121902606	LINE|L2|L2a	-	chr2	121902510	121944892	STRG.19655.1	+	121902510,121944333	121902989,121944892	0.600000
breast_epithelium_female_adult_51_years	chr8	61578141	61578142	61578141	+	High_confidence	26	31	31	2.060755	4.195816	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	1.000000
breast_epithelium_female_adult_51_years	chr19	44719449	44719457	44719449	-	High_confidence	3	3	10	0.664760	2.725481	chr19	44719365	44719654	LINE|L2|L2a	+	chr19	44715563	44718685	AC243964.2|ENST00000591312.1	-	44715563,44718453	44716083,44718685	0.600000
breast_epithelium_female_adult_51_years	chr1	78620056	78620058	78620057	+	High_confidence	3	5	7	0.465332	2.521641	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78619921	78628207	IFI44L|ENST00000452835.1	+	78619921,78620456,78627905	78620058,78620571,78628207	0.714286
breast_epithelium_female_adult_51_years	chr8	47604699	47604724	47604723	+	RAMPAGE_only	9	9	18	1.196567	3.794653	chr8	47604481	47604915	LINE|L2|L2c	-	chr8	47654087	47735883	SPIDR|ENST00000519141.5	+	47654087,47673800,47700402,47701720,47701955,47712661,47713488,47727199,47728932,47729411,47735306	47654149,47673941,47700490,47701864,47702015,47712872,47713641,47727293,47729047,47729465,47735883	0.722222
breast_epithelium_female_adult_51_years	chr15	69080885	69080891	69080890	+	High_confidence	59	63	122	8.110067	6.303957	chr15	69080204	69081232	LINE|L1|L1M7	-	chr15	69080873	69095807	STRG.122687.3	+	69080873,69090914,69094700	69081376,69092242,69095807	0.909836
breast_epithelium_female_adult_51_years	chr17	59209392	59209398	59209392	+	High_confidence	3	4	9	0.598284	2.947703	chr17	59209373	59209528	SINE|Alu|AluSx3	-	chr17	59209399	59215239	SMG8|ENST00000543872.6	+	59209399,59209899,59212340,59212728,59214804	59209511,59211810,59212486,59213601,59215239	0.888889
breast_epithelium_female_adult_51_years	chr3	149285890	149285891	149285890	-	High_confidence	18	18	21	1.395995	3.826875	chr3	149285794	149286264	LTR|ERV1|LTR8	-	chr3	149284303	149284935	STRG.34993.9	-	149284303	149284935	0.666667
breast_epithelium_female_adult_51_years	chr2	240136800	240136822	240136821	-	High_confidence	8	8	22	1.462471	3.784184	chr2	240136718	240137396	LINE|L1|L1MB3	+	chr2	240133982	240136807	COPS9|ENST00000403160.4	-	240133982,240136221	240134005,240136807	0.818182
breast_epithelium_female_adult_51_years	chrX	5726193	5726194	5726193	-	High_confidence	7	7	8	0.531808	2.807355	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.500000
breast_epithelium_female_adult_51_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	32	35	35	2.326659	4.036007	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
breast_epithelium_female_adult_51_years	chr10	37304729	37304754	37304729	+	RAMPAGE_only	2	3	14	0.930663	3.664498	chr10	37304655	37304967	SINE|Alu|AluJr	-	chr10	37248117	37315801	STRG.91112.15	+	37248117,37261863,37262482,37264529,37314377,37315695	37252396,37261925,37262539,37309328,37314441,37315801	1.000000
breast_epithelium_female_adult_51_years	chr11	70077938	70077957	70077956	+	High_confidence	4	4	10	0.664760	2.947703	chr11	70077921	70078008	LINE|L2|L2c	-	chr11	70078301	70189545	ANO1|NM_018043.5	+	70078301,70087751,70103065,70103998,70105733,70108352,70111706,70116457,70124349,70126060,70131918,70149709,70152449,70153056,70155910,70156946,70161160,70161621,70163282,70165469,70167241,70170886,70180003,70182501,70185589,70187737	70078714,70088084,70103164,70104150,70105788,70108404,70111762,70116499,70124414,70126195,70132079,70149792,70152461,70153128,70155988,70157021,70161362,70161733,70163340,70165570,70167387,70171039,70180056,70182686,70185695,70189545	0.700000
breast_epithelium_female_adult_51_years	chr6	26474335	26474346	26474345	+	RAMPAGE_only	4	4	14	0.930663	3.546594	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.500000
breast_epithelium_female_adult_51_years	chr11	102832671	102832694	102832693	+	High_confidence	14	15	24	1.595423	3.658993	chr11	102832592	102832982	DNA|TcMar-Tigger|MER6A	+	chr11	102831702	103069163	STRG.101185.1	+	102831702,103048413,103069115	102832906,103048541,103069163	0.666667
breast_epithelium_female_adult_51_years	chr2	204544985	204544986	204544985	+	High_confidence	4	4	7	0.465332	2.521641	chr2	204544936	204545029	SINE|MIR|MIR3	+	chr2	204545792	205048595	PARD3B|ENST00000415947.1	+	204545792,204686180,204965151,205047580	204546171,204686282,204965323,205048595	0.714286
breast_epithelium_female_adult_51_years	chr11	3477038	3477073	3477055	-	High_confidence	57	57	295	19.610408	6.155354	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3473240	3477069	STRG.95518.2	-	3473240	3477069	0.986441
breast_epithelium_female_adult_51_years	chr3	188947214	188947237	188947236	+	High_confidence	26	26	64	4.254461	5.402115	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.546875
breast_epithelium_female_adult_51_years	chr19	8396446	8396447	8396446	+	High_confidence	8	8	10	0.664760	2.947703	chr19	8396324	8397353	LINE|L2|L2a	-	chr19	8396366	8404128	STRG.136912.3	+	8396366,8399862,8402085,8402484	8396702,8400058,8402279,8404128	0.900000
breast_epithelium_female_adult_51_years	chr6	131015842	131015852	131015844	-	High_confidence	4	6	10	0.664760	2.947703	chr6	131015722	131015818	LINE|L2|L2a	-	chr6	130956024	131015842	EPB41L2|ENST00000526983.1	-	130956024,131015280,131015818	130956499,131015333,131015842	0.800000
breast_epithelium_female_adult_51_years	chr9	128921399	128921413	128921399	+	High_confidence	11	11	21	1.395995	4.201841	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.904762
breast_epithelium_female_adult_51_years	chrX	18467392	18467393	18467392	+	RAMPAGE_only	8	8	10	0.664760	2.641604	chrX	18467091	18467553	LTR|ERVL|LTR32	+	chrX	18442274	18619944	CDKL5|ENST00000463994.4	+	18442274,18506934,18510819,18564476,18575353,18579847,18581890,18584262,18587953,18595347,18598461,18603901,18608810,18609464,18613151,18619866	18442390,18507160,18510854,18564522,18575490,18579968,18581950,18584353,18588143,18595428,18598613,18604868,18608912,18609570,18613275,18619944	0.900000
breast_epithelium_female_adult_51_years	chr14	91462124	91462224	91462209	-	High_confidence	6	6	43	2.858466	4.507433	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.976744
breast_epithelium_female_adult_51_years	chr1	147172956	147172976	147172975	+	High_confidence	3	5	10	0.664760	2.947703	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.900000
breast_epithelium_female_adult_51_years	chr4	119217569	119217599	119217569	+	RAMPAGE_only	4	4	10	0.664760	3.169925	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212742	119294638	STRG.44717.4	+	119212742,119217549,119235289,119239217,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119269690,119271295,119273631,119291164,119292337	119212873,119217673,119235411,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119269837,119272034,119273708,119291261,119294638	0.600000
breast_epithelium_female_adult_51_years	chr4	14877557	14877580	14877567	-	High_confidence	81	83	150	9.971394	6.203270	chr4	14877247	14877682	LINE|L2|L2c	+	chr4	14468719	14877604	STRG.39477.2	-	14468719,14477346,14700742,14716094,14763000,14859542,14877258	14474563,14477458,14700781,14716169,14765136,14859616,14877604	0.793333
breast_epithelium_female_adult_51_years	chr4	138928130	138928131	138928130	+	RAMPAGE_only	35	35	49	3.257322	5.272773	chr4	138927835	138928235	LTR|ERV1|LTR7	+	chr4	138929991	138942207	STRG.45394.1	+	138929991,138939727	138930416,138942207	0.551020
breast_epithelium_female_adult_51_years	chr1	77532106	77532107	77532106	+	High_confidence	9	9	12	0.797712	3.095795	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.750000
breast_epithelium_female_adult_51_years	chr4	782623	782655	782654	+	High_confidence	2	2	8	0.531808	3.000000	chr4	782341	782655	LINE|L2|L2a	+	chr4	782621	785833	STRG.38454.1	+	782621	785833	0.500000
breast_epithelium_female_adult_51_years	chr8	143281669	143281687	143281686	-	High_confidence	32	33	96	6.381692	5.296930	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.593750
breast_epithelium_female_adult_51_years	chr12	111875	111884	111883	-	High_confidence	6	6	12	0.797712	3.251629	chr12	110820	111833	LTR|ERV1|HERVP71A-int	-	chr12	106523	111850	AC026369.3|ENST00000540226.1	-	106523,111618	106877,111850	0.916667
breast_epithelium_female_adult_51_years	chr10	370581	370604	370603	-	High_confidence	3	3	6	0.398856	2.584963	chr10	370551	370635	LINE|L2|L2a	+	chr10	336978	370864	STRG.88985.4	-	336978,337813,344808,344998,348640,349330,356425,357827,362489,363196,364373,366274,369493,370494	337397,341329,344918,345110,348762,349454,356506,357937,362691,363311,364582,366411,369633,370864	0.833333
breast_epithelium_female_adult_51_years	chrX	16712889	16712959	16712889	-	High_confidence	7	7	45	2.991418	5.193707	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.777778
breast_epithelium_female_adult_51_years	chr3	102177402	102177403	102177402	-	High_confidence	43	48	48	3.190846	4.686641	chr3	102177236	102177901	LTR|ERV1|LTR9A1	-	chr3	102174007	102177003	STRG.32324.1	-	102174007	102177003	0.770833
breast_epithelium_female_adult_51_years	chr16	30623968	30623969	30623968	-	High_confidence	36	41	45	2.991418	5.075078	chr16	30623844	30624281	LTR|ERVK|LTR3B_	-	chr16	30604617	30624012	ZNF689|ENST00000566673.5	-	30604617,30609524,30610587,30623739	30605447,30609638,30610782,30624012	0.644444
breast_epithelium_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	888	1027	1572	104.500210	5.323405	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.989186
breast_epithelium_female_adult_51_years	chr3	177631902	177631908	177631907	+	RAMPAGE_only	3	3	8	0.531808	2.807355	chr3	177631913	177631992	LINE|RTE-X|L4_A_Mam	+	chr3	177679421	177753510	STRG.37156.2	+	177679421,177687398,177751910	177685014,177687588,177753510	0.500000
breast_epithelium_female_adult_51_years	chrX	73837450	73837504	73837450	-	RAMPAGE_only	7	8	23	1.528947	3.327485	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
breast_epithelium_female_adult_51_years	chr8	143018394	143018434	143018394	-	High_confidence	16	16	96	6.381692	5.902655	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.697917
breast_epithelium_female_adult_51_years	chr11	287308	287315	287314	+	High_confidence	9	10	19	1.263043	3.836592	chr11	287048	287379	LINE|L2|L2a	-	chr11	288037	288987	AC136475.3|ENST00000534742.1	+	288037,288949	288811,288987	0.947368
breast_epithelium_female_adult_51_years	chr3	69237171	69237186	69237185	-	High_confidence	8	8	28	1.861327	4.680813	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69195248	69237482	STRG.31029.5	-	69195248,69196254,69196899,69198697,69216262,69218321,69221857,69224606,69237096	69195364,69196396,69197038,69198774,69216349,69218379,69221923,69224690,69237482	0.607143
breast_epithelium_female_adult_51_years	chr2	7775168	7775188	7775168	+	High_confidence	7	7	20	1.329519	3.826875	chr2	7775136	7775349	LINE|L2|L2c	-	chr2	7775193	7788517	STRG.13547.1	+	7775193,7777124,7787686	7775357,7777525,7788517	0.950000
breast_epithelium_female_adult_51_years	chr4	138930307	138930313	138930312	+	High_confidence	5	5	10	0.664760	2.721928	chr4	138928237	138931267	LTR|ERV1|HERVH-int	+	chr4	138929991	138942207	STRG.45394.1	+	138929991,138939727	138930416,138942207	0.800000
breast_epithelium_female_adult_51_years	chr22	23527431	23527455	23527443	+	High_confidence	46	55	131	8.708351	5.667651	chr22	23527401	23527785	LINE|L2|L2b	-	chr22	23527232	23547167	STRG.146831.3	+	23527232,23536971,23538760	23527564,23537136,23547167	0.916031
breast_epithelium_female_adult_51_years	chr12	10363964	10363965	10363964	+	High_confidence	7	7	8	0.531808	2.521641	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.875000
breast_epithelium_female_adult_51_years	chr9	14222288	14222320	14222319	-	RAMPAGE_only	2	3	10	0.664760	3.169925	chr9	14222262	14222324	LTR|ERVL-MaLR|MLT1E1A	+	chr9	14150179	14313667	STRG.83460.14	-	14150179,14155824,14179726,14201364,14271288,14287817,14313481	14150265,14155893,14201234,14271118,14287153,14307520,14313667	0.900000
breast_epithelium_female_adult_51_years	chr9	20658312	20658349	20658338	+	High_confidence	23	24	124	8.243019	5.181184	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658334	20954160	STRG.83601.5	+	20658334,20715321,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20946700,20948270,20948850,20949603,20950995,20952984	20658826,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20944774,20946820,20948393,20948928,20949675,20951098,20954160	0.717742
breast_epithelium_female_adult_51_years	chr15	89838063	89838064	89838063	-	RAMPAGE_only	8	8	10	0.664760	2.725481	chr15	89837927	89838155	SINE|MIR|MIRb	+	chr15	89834981	89893977	AP3S2|ENST00000423566.6	-	89834981,89837614,89871474,89877305,89888520,89889048,89893880	89835643,89837722,89871546,89877424,89888632,89889140,89893977	0.800000
breast_epithelium_female_adult_51_years	chr6	77369031	77369032	77369031	-	RAMPAGE_only	7	7	7	0.465332	2.807355	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77145271	77273309	STRG.61659.1	-	77145271,77151818,77271339,77273026	77151280,77151974,77271493,77273309	1.000000
breast_epithelium_female_adult_51_years	chr1	85830949	85830950	85830949	-	RAMPAGE_only	5	5	7	0.465332	2.807355	chr1	85824940	85830944	LINE|L1|L1PA3	-	chr1	85729232	86156438	COL24A1|NM_152890.5	-	85729232,85734748,85737395,85744665,85745440,85761395,85761530,85775673,85781219,85783495,85784112,85784258,85786353,85816787,85818033,85823535,85823684,85838584,85841221,85842067,85842339,85847664,85849352,85868518,85868781,85874648,85875276,85877121,85889559,85895857,85896020,85896355,85907193,85908597,85909949,85911379,85961248,85965008,85970226,85971339,85987600,86017150,86022239,86022537,86022832,86022953,86031877,86033869,86046824,86050123,86057930,86059120,86063714,86089173,86092266,86112566,86115324,86124844,86146118,86156340	85730692,85734964,85737505,85744834,85745506,85761422,85761566,85775709,85781273,85783558,85784166,85784366,85786461,85816895,85818087,85823589,85823738,85838638,85841278,85842121,85842393,85847772,85849406,85868626,85868835,85874702,85875330,85877175,85889613,85895902,85896065,85896409,85907247,85908651,85910003,85911433,85961293,85965062,85970271,85971393,85987654,86017204,86022293,86022591,86022877,86023007,86031922,86033923,86046869,86050177,86057975,86059174,86063759,86089227,86092320,86112620,86115378,86126214,86146183,86156438	1.000000
breast_epithelium_female_adult_51_years	chr1	51297890	51297946	51297945	-	High_confidence	48	60	170	11.300913	6.601989	chr1	51297625	51298239	LINE|L2|L2a	+	chr1	51287985	51297960	TTC39A|ENST00000534098.1	-	51287985,51288838,51290004,51290513,51294390,51297790	51288280,51288955,51290119,51290625,51294511,51297960	0.670588
breast_epithelium_female_adult_51_years	chr22	36145876	36145886	36145880	-	RAMPAGE_only	5	5	14	0.930663	3.238901	chr22	36145730	36145893	LTR|ERVL-MaLR|MLT1B	+	chr22	36141026	36149126	APOL3|ENST00000424878.3	-	36141026,36145472,36149045	36142058,36145599,36149126	0.928571
breast_epithelium_female_adult_51_years	chr10	37295674	37295748	37295674	+	RAMPAGE_only	3	3	21	1.395995	3.997670	chr10	37295285	37295693	LINE|L2|L2	-	chr10	37248117	37315801	STRG.91112.15	+	37248117,37261863,37262482,37264529,37314377,37315695	37252396,37261925,37262539,37309328,37314441,37315801	0.904762
breast_epithelium_female_adult_51_years	chr2	232296062	232296092	232296091	-	High_confidence	8	8	20	1.329519	4.021928	chr2	232294917	232296264	LINE|L2|L2	+	chr2	232288962	232296079	STRG.26004.1	-	232288962,232295395	232291205,232296079	0.750000
breast_epithelium_female_adult_51_years	chr17	1770503	1770518	1770517	+	High_confidence	4	4	18	1.196567	3.947703	chr17	1770450	1770759	SINE|Alu|AluSx1	-	chr17	1770525	1772032	SERPINF1|ENST00000570820.1	+	1770525,1771871	1771184,1772032	0.944444
breast_epithelium_female_adult_51_years	chr17	28234014	28234054	28234042	-	High_confidence	30	30	199	13.228716	5.875460	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28230673	28234058	STRG.129938.1	-	28230673,28233917	28233342,28234058	0.894472
breast_epithelium_female_adult_51_years	chr8	99891978	99892057	99892056	-	RAMPAGE_only	12	12	58	3.855606	4.639515	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
breast_epithelium_female_adult_51_years	chr1	89272838	89272887	89272867	-	High_confidence	7	7	56	3.722654	5.012911	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.910714
breast_epithelium_female_adult_51_years	chr10	133369969	133369970	133369969	-	RAMPAGE_only	5	5	7	0.465332	2.521641	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
breast_epithelium_female_adult_51_years	chr16	2757853	2757854	2757853	+	High_confidence	4	4	6	0.398856	2.584963	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
breast_epithelium_female_adult_51_years	chr8	32927963	32927977	32927976	+	High_confidence	19	19	57	3.789130	5.398594	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927967	33045699	STRG.77379.1	+	32927967,32996200,33041634,33044366	32928093,32996316,33041771,33045699	0.912281
breast_epithelium_female_adult_51_years	chrX	107155947	107155965	107155963	-	RAMPAGE_only	4	7	14	0.930663	3.392747	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107121619	107154234	STRG.153355.14	-	107121619,107147742,107153171,107153453,107154095	107124332,107147809,107153306,107153503,107154234	0.785714
breast_epithelium_female_adult_51_years	chr3	197913291	197913303	197913291	-	High_confidence	3	3	10	0.664760	3.169925	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.900000
breast_epithelium_female_adult_51_years	chr2	201115966	201116019	201115990	+	High_confidence	7	7	26	1.728375	3.483074	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.961538
breast_epithelium_female_adult_51_years	chr11	2376259	2376265	2376259	+	High_confidence	2	2	7	0.465332	2.584963	chr11	2376100	2376285	DNA|hAT-Charlie|MER3	-	chr11	2376176	2397419	CD81|NM_001297649.1	+	2376176,2390411,2394094,2394971,2395415,2395868,2396627,2396803	2376357,2390526,2394192,2395046,2395520,2395970,2396714,2397419	0.857143
breast_epithelium_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	91	91	91	6.049312	4.260057	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.934066
breast_epithelium_female_adult_51_years	chr5	151687193	151687245	151687244	-	High_confidence	3	3	15	0.997139	3.664498	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.733333
breast_epithelium_female_adult_51_years	chr2	200889060	200889318	200889293	-	High_confidence	42	42	368	24.463153	7.091182	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.638587
breast_epithelium_female_adult_51_years	chr9	39809843	39809859	39809858	-	High_confidence	7	11	24	1.595423	3.605389	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.916667
breast_epithelium_female_adult_51_years	chr2	71423276	71423309	71423276	+	RAMPAGE_only	4	5	16	1.063615	3.327820	chr2	71423244	71423287	DNA|hAT-Ac|OldhAT1	+	chr2	71415908	71434869	STRG.17669.10	+	71415908,71424649,71426459,71431326,71433164,71434741	71424038,71424715,71428651,71431428,71433283,71434869	1.000000
breast_epithelium_female_adult_51_years	chr11	34511819	34511820	34511819	-	High_confidence	4	4	6	0.398856	2.584963	chr11	34511819	34511851	LINE|CR1|X6A_LINE	-	chr11	34482429	34511828	ELF5|ENST00000528709.1	-	34482429,34490008,34505628,34511543	34482499,34490059,34505753,34511828	0.500000
breast_epithelium_female_adult_51_years	chr7	30563875	30563899	30563898	-	High_confidence	4	4	13	0.864187	3.022055	chr7	30563654	30564076	LTR|ERVL-MaLR|MLT1C	-	chr7	30548356	30564617	GARS-DT|ENST00000355837.4	-	30548356,30563722	30562128,30564617	0.923077
breast_epithelium_female_adult_51_years	chr1	166850210	166850235	166850234	+	RAMPAGE_only	6	6	12	0.797712	3.022055	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
breast_epithelium_female_adult_51_years	chr4	138930149	138930150	138930149	-	RAMPAGE_only	27	28	29	1.927803	4.236369	chr4	138928237	138931267	LTR|ERV1|HERVH-int	+	chr4	138929499	138931759	STRG.45379.6	-	138929499	138931759	0.517241
breast_epithelium_female_adult_51_years	chr5	67646698	67646731	67646708	-	High_confidence	4	5	18	1.196567	3.734522	chr5	67646558	67646761	SINE|MIR|MIRc	-	chr5	67627165	67646802	STRG.50579.2	-	67627165,67634306,67636807,67646605	67633335,67634395,67636948,67646802	0.833333
breast_epithelium_female_adult_51_years	chr4	184768350	184768365	184768350	-	RAMPAGE_only	2	2	7	0.465332	2.584963	chr4	184768056	184768306	SINE|MIR|MIRc	-	chr4	184755600	184766702	ACSL1|ENST00000503407.5	-	184755600,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621	184757265,184757706,184757920,184760500,184762493,184763255,184764925,184765986,184766702	0.571429
breast_epithelium_female_adult_51_years	chr11	65382645	65382663	65382645	-	High_confidence	7	7	18	1.196567	4.058814	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	1.000000
breast_epithelium_female_adult_51_years	chr4	184537514	184537550	184537538	-	High_confidence	4	4	18	1.196567	3.969816	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184536755	184537550	STRG.47751.1	-	184536755	184537550	0.777778
breast_epithelium_female_adult_51_years	chr3	139344537	139344548	139344547	+	High_confidence	5	5	11	0.731236	3.121928	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.909091
breast_epithelium_female_adult_51_years	chr19	3047779	3047815	3047811	-	High_confidence	8	9	31	2.060755	4.281728	chr19	3047758	3047946	LINE|L2|L2a	+	chr19	2997637	3047635	TLE2|NM_001144761.1	-	2997637,3002352,3005436,3005720,3006419,3008868,3009541,3011021,3013668,3014569,3015652,3017839,3019282,3019698,3025019,3027828,3028318,3028705,3045725,3047562	2997955,3002503,3005584,3005968,3006669,3008945,3009702,3011160,3013818,3014614,3015760,3017859,3019466,3019773,3025082,3027873,3028382,3028803,3045799,3047635	0.709677
breast_epithelium_female_adult_51_years	chr4	4269605	4269614	4269613	-	High_confidence	20	23	72	4.786269	3.854460	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.902778
breast_epithelium_female_adult_51_years	chrX	48683361	48683363	48683361	+	High_confidence	8	14	14	0.930663	3.467720	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
breast_epithelium_female_adult_51_years	chrX	131501702	131501723	131501702	-	RAMPAGE_only	6	6	12	0.797712	2.913977	chrX	131501574	131502093	LTR|ERVL|MLT2A2	-	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.833333
breast_epithelium_female_adult_51_years	chr19	55280199	55280218	55280217	-	High_confidence	3	4	9	0.598284	2.500000	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.888889
breast_epithelium_female_adult_51_years	chr10	72355126	72355146	72355145	-	High_confidence	4	4	9	0.598284	3.169925	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.888889
breast_epithelium_female_adult_51_years	chr9	97575039	97575040	97575039	+	High_confidence	14	17	19	1.263043	3.787144	chr9	97574036	97575455	LTR|ERV1|LTR12C	+	chr9	97574894	97601748	STRG.86625.2	+	97574894,97591290,97599633	97575486,97591435,97601748	1.000000
breast_epithelium_female_adult_51_years	chr1	1655409	1655445	1655409	-	RAMPAGE_only	12	12	34	2.260183	4.862576	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.852941
breast_epithelium_female_adult_51_years	chr3	114759276	114759301	114759276	-	High_confidence	6	9	19	1.263043	3.725481	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.578947
breast_epithelium_female_adult_51_years	chr12	10363706	10363707	10363706	+	High_confidence	6	7	9	0.598284	2.947703	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.777778
breast_epithelium_female_adult_51_years	chr7	2242922	2242923	2242922	+	High_confidence	10	10	10	0.664760	3.321928	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
breast_epithelium_female_adult_51_years	chr8	18010611	18010660	18010659	+	RAMPAGE_only	2	2	8	0.531808	2.521641	chr8	18010700	18010985	SINE|Alu|AluSg	+	chr8	18013827	18027758	PCM1|ENST00000519802.5	+	18013827,18014583,18025360,18025543,18027636	18014036,18014840,18025453,18025658,18027758	0.750000
breast_epithelium_female_adult_51_years	chr2	11345418	11345456	11345455	-	High_confidence	4	4	10	0.664760	3.121928	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11179758	11345407	ROCK2|NM_001321643.1	-	11179758,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345407	1.000000
breast_epithelium_female_adult_51_years	chr22	46058234	46058235	46058234	-	High_confidence	8	8	8	0.531808	2.750000	chr22	46058183	46058282	SINE|MIR|MIRc	+	chr22	46057696	46058246	STRG.148219.1	-	46057696	46058246	0.750000
breast_epithelium_female_adult_51_years	chr1	15305736	15305738	15305737	+	High_confidence	6	8	12	0.797712	3.027169	chr1	15305544	15305895	LTR|ERVL-MaLR|THE1A	+	chr1	15305760	15330059	FHAD1|ENST00000375996.6	+	15305760,15308612,15313056,15316377,15317823,15324451,15327058,15328276,15329345	15305819,15308736,15313187,15316467,15317928,15324559,15327142,15328429,15330059	0.833333
breast_epithelium_female_adult_51_years	chr12	108635848	108635849	108635848	+	High_confidence	51	51	51	3.390274	5.211449	chr12	108635755	108635962	SINE|MIR|MIRb	-	chr12	108635848	108640917	AC007569.1|ENST00000547282.1	+	108635848,108636394,108640873	108636046,108636455,108640917	0.549020
breast_epithelium_female_adult_51_years	chr4	138930285	138930344	138930285	-	RAMPAGE_only	6	6	22	1.462471	3.784184	chr4	138928237	138931267	LTR|ERV1|HERVH-int	+	chr4	138929499	138931759	STRG.45379.6	-	138929499	138931759	0.636364
breast_epithelium_female_adult_51_years	chr10	37237489	37237519	37237489	+	RAMPAGE_only	3	3	9	0.598284	3.000000	chr10	37237306	37237522	DNA|hAT-Charlie|Charlie15a	-	chr10	37167570	37315801	STRG.91112.11	+	37167570,37169529,37169651,37173711,37173838,37176156,37177665,37181321,37181443,37185512,37185639,37187957,37189466,37193063,37193185,37197280,37197407,37199726,37201234,37216180,37218979,37231460,37232498,37235794,37241170,37242757,37248117,37252247,37262482,37264529,37309096,37314377,37315695	37169249,37169558,37169724,37173740,37175775,37176218,37180798,37181350,37181516,37185541,37185712,37188019,37189557,37193092,37193258,37197309,37197480,37199788,37201325,37216394,37219897,37231680,37232567,37241016,37241273,37242847,37248620,37261925,37262539,37264637,37309328,37314441,37315801	0.888889
breast_epithelium_female_adult_51_years	chr13	52236308	52236326	52236325	-	RAMPAGE_only	6	6	11	0.731236	3.277613	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.636364
breast_epithelium_female_adult_51_years	chr1	176162895	176162905	176162904	-	RAMPAGE_only	3	4	8	0.531808	2.807355	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	176116645	176206440	COP1|ENST00000491600.5	-	176116645,176135009,176136487,176149005,176162868,176163814,176168664,176175909,176184632,176206348	176116681,176135086,176136547,176149074,176162988,176163891,176168748,176176007,176184692,176206440	0.750000
breast_epithelium_female_adult_51_years	chr18	36122242	36122267	36122242	-	High_confidence	5	5	15	0.997139	3.324863	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.933333
breast_epithelium_female_adult_51_years	chr19	40772059	40772060	40772059	+	RAMPAGE_only	27	27	27	1.794851	3.750465	chr19	40771932	40772225	SINE|Alu|AluJo	-	chr19	40775176	40777493	MIA|NM_001202553.1	+	40775176,40775536,40775751,40776968,40777396	40775211,40775669,40775885,40777079,40777493	1.000000
breast_epithelium_female_adult_51_years	chr7	17099566	17099567	17099566	-	High_confidence	19	19	25	1.661899	3.318030	chr7	17099547	17099907	LINE|RTE-BovB|MamRTE1	-	chr7	17098602	17099502	STRG.67888.1	-	17098602	17099502	0.840000
breast_epithelium_female_adult_51_years	chr4	138930256	138930264	138930256	+	High_confidence	6	6	10	0.664760	3.121928	chr4	138928237	138931267	LTR|ERV1|HERVH-int	+	chr4	138929991	138942207	STRG.45394.1	+	138929991,138939727	138930416,138942207	1.000000
breast_epithelium_female_adult_51_years	chr11	123060124	123060220	123060168	-	High_confidence	11	11	61	4.055034	4.683823	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	0.983607
breast_epithelium_female_adult_51_years	chr5	119420437	119420470	119420440	+	RAMPAGE_only	36	46	140	9.306634	5.968711	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.821429
breast_epithelium_female_adult_51_years	chr19	15829094	15829095	15829094	+	High_confidence	24	25	27	1.794851	4.056021	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15835419	UCA1|ENST00000645221.1	+	15829094,15831254,15834501,15835187	15829338,15831356,15835114,15835419	0.740741
breast_epithelium_female_adult_51_years	chr2	96638013	96638023	96638022	-	High_confidence	5	5	11	0.731236	3.095795	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.545455
breast_epithelium_female_adult_51_years	chr1	210366890	210366994	210366975	-	High_confidence	37	39	260	17.283750	6.282669	chr1	210366950	210367095	LINE|L2|L2a	-	chr1	210360695	210366997	STRG.10841.1	-	210360695,210366786	210365181,210366997	0.957692
breast_epithelium_female_adult_51_years	chr4	122700441	122700442	122700441	+	High_confidence	146	146	177	11.766245	6.677496	chr4	122700197	122700669	LTR|ERVL|MER70A	+	chr4	122700666	122708845	STRG.44852.4	+	122700666	122708845	0.728814
breast_epithelium_female_adult_51_years	chr5	140633672	140633680	140633679	-	High_confidence	3	3	7	0.465332	2.584963	chr5	140633624	140633721	LINE|CR1|L3	+	chr5	140632818	140633700	CD14|ENST00000512545.1	-	140632818,140633068,140633530	140632980,140633292,140633700	0.571429
breast_epithelium_female_adult_51_years	chr1	246417412	246417413	246417412	-	High_confidence	16	16	17	1.130091	3.125000	chr1	246417275	246418033	LTR|ERV1|LTR8B	-	chr1	245749339	246417412	SMYD3|NM_022743.2	-	245749339,245764040,245858495,245863798,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246417295	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246417412	0.882353
breast_epithelium_female_adult_51_years	chr8	47277069	47277070	47277069	+	High_confidence	11	11	11	0.731236	2.913977	chr8	47276926	47277227	SINE|Alu|AluSp	-	chr8	47276832	47735911	SPIDR|ENST00000521214.5	+	47276832,47279269,47279861,47284027,47291032,47293866,47396375,47407860,47440322,47595810,47598945,47673800,47700407,47701720,47701955,47712661,47713488,47727199,47728932,47729411,47735306	47277071,47279436,47280017,47284094,47291137,47294030,47396626,47407961,47440542,47596006,47599196,47673941,47700490,47701864,47702015,47712872,47713641,47727293,47729047,47729465,47735911	1.000000
breast_epithelium_female_adult_51_years	chr1	209429204	209429205	209429204	+	High_confidence	16	17	23	1.528947	4.088779	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432407	STRG.10814.5	+	209429010,209429180,209430424	209429088,209429408,209432407	0.826087
breast_epithelium_female_adult_51_years	chr12	91179462	91179526	91179462	-	High_confidence	2993	3084	8979	596.887649	7.231797	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.675576
breast_epithelium_female_adult_51_years	chr1	209429238	209429288	209429238	+	High_confidence	8	10	37	2.459611	4.760067	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.513514
breast_epithelium_female_adult_51_years	chr8	53523839	53523886	53523862	-	High_confidence	38	39	102	6.780548	6.165395	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.921569
breast_epithelium_female_adult_51_years	chr8	143558019	143558020	143558019	+	High_confidence	14	14	14	0.930663	3.664498	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	1.000000
breast_epithelium_female_adult_51_years	chr11	67022648	67022649	67022648	+	High_confidence	7	7	9	0.598284	2.500000	chr11	67022615	67022807	SINE|MIR|MIRb	+	chr11	67022718	67050863	SYT12|NM_001177880.1	+	67022718,67030121,67034644,67039810,67043637,67044592,67045743,67048583	67022925,67030178,67034838,67040203,67043853,67044713,67045877,67050863	0.888889
breast_epithelium_female_adult_51_years	chr5	70401467	70401512	70401511	+	High_confidence	6	6	27	1.794851	4.293661	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70401015	70873061	STRG.50991.8	+	70401015,70749576,70751076,70785437,70789207,70791131,70795780,70850809,70853535	70401668,70749610,70751232,70785625,70789292,70791306,70795916,70853190,70873061	0.518519
breast_epithelium_female_adult_51_years	chrX	15602157	15602158	15602157	-	High_confidence	17	17	23	1.528947	4.262692	chrX	15602053	15602111	LINE|CR1|L3	-	chrX	15594886	15602148	ACE2|ENST00000484756.1	-	15594886,15600725,15601955	15595003,15601014,15602148	0.565217
breast_epithelium_female_adult_51_years	chr11	18706988	18707002	18706991	-	High_confidence	12	12	47	3.124370	5.115847	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18704311	18707106	STRG.96557.1	-	18704311,18705816,18706913	18704538,18706146,18707106	0.510638
breast_epithelium_female_adult_51_years	chr15	88635654	88635661	88635654	+	High_confidence	6	7	13	0.864187	3.418296	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.538462
breast_epithelium_female_adult_51_years	chr17	43860952	43860974	43860952	-	RAMPAGE_only	2	2	14	0.930663	3.378783	chr17	43860877	43860994	SINE|MIR|MIR3	-	chr17	43849834	43854710	STRG.130896.1	-	43849834,43854410	43850301,43854710	0.500000
breast_epithelium_female_adult_51_years	chr4	155122816	155122817	155122816	-	High_confidence	46	47	52	3.456750	4.566370	chr4	155121473	155122913	LTR|ERV1|MER4-int	-	chr4	155121874	155122807	STRG.46403.1	-	155121874,155122618	155122367,155122807	0.711538
breast_epithelium_female_adult_51_years	chr21	22062636	22062648	22062647	-	High_confidence	9	9	23	1.528947	3.757925	chr21	22062350	22062974	LINE|L2|L2a	+	chr21	22041237	22062472	STRG.144409.1	-	22041237,22042944,22062008	22041435,22043087,22062472	0.869565
breast_epithelium_female_adult_51_years	chr1	89128404	89128444	89128427	+	High_confidence	47	57	238	15.821279	6.346732	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89128432	89179798	STRG.5726.1	+	89128432,89148590,89149331,89179318	89128644,89148680,89149546,89179798	0.789916
breast_epithelium_female_adult_51_years	chr17	82081606	82081626	82081606	-	High_confidence	2	2	7	0.465332	2.807355	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.571429
breast_epithelium_female_adult_51_years	chr2	232295917	232296000	232295999	-	High_confidence	121	135	204	13.561096	6.672487	chr2	232294917	232296264	LINE|L2|L2	+	chr2	232288962	232296079	STRG.26004.1	-	232288962,232295395	232291205,232296079	0.637255
breast_epithelium_female_adult_51_years	chr5	55232920	55232926	55232920	+	High_confidence	3	3	7	0.465332	2.521641	chr5	55232867	55232985	SINE|MIR|MIRc	+	chr5	55232905	55234284	STRG.50011.1	+	55232905	55234284	0.857143
breast_epithelium_female_adult_51_years	chr21	16011599	16011684	16011646	+	RAMPAGE_only	7	8	50	3.323798	5.076566	chr21	16011644	16011787	LTR|ERVL-MaLR|MLT1I-int	+	chr21	16070487	16610777	MIR99AHG|NR_136542.1	+	16070487,16071113,16181590,16231055,16391613,16487489,16594339,16606993	16070567,16071398,16181687,16231115,16391685,16487538,16594454,16610777	0.660000
breast_epithelium_female_adult_51_years	chrX	72305913	72305914	72305913	-	High_confidence	93	109	112	7.445308	5.659066	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	0.964286
breast_epithelium_female_adult_51_years	chr10	37146717	37146776	37146775	+	High_confidence	11	11	59	3.922082	4.887235	chr10	37146483	37146996	LTR|ERVK|LTR22B	-	chr10	37146653	37315801	STRG.91112.6	+	37146653,37147369,37149650,37149776,37152059,37153571,37158391,37158513,37162648,37162775,37165093,37166604,37169529,37169651,37173711,37173838,37176156,37177665,37181321,37181443,37185512,37185639,37187957,37189466,37193063,37193185,37197280,37197407,37199726,37201234,37216180,37217694,37218979,37231460,37232498,37235794,37241170,37242757,37248117,37261863,37262482,37264529,37266522,37314377,37315695	37147068,37147457,37149679,37149849,37152121,37153662,37158420,37158586,37162677,37162848,37165155,37166695,37169558,37169724,37173740,37173911,37176218,37177756,37181350,37181516,37185541,37185712,37188019,37189557,37193092,37193258,37197309,37197480,37199788,37201325,37216394,37217878,37219897,37231680,37232567,37241016,37241273,37242847,37252396,37261925,37262539,37266350,37309180,37314441,37315801	0.949153
breast_epithelium_female_adult_51_years	chr16	81181301	81181331	81181330	-	High_confidence	3	3	8	0.531808	2.521641	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.875000
breast_epithelium_female_adult_51_years	chr10	46269603	46269607	46269606	-	High_confidence	3	5	9	0.598284	2.500000	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.666667
breast_epithelium_female_adult_51_years	chr11	62600225	62600242	62600241	-	High_confidence	4	4	8	0.531808	2.807355	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.625000
breast_epithelium_female_adult_51_years	chr9	72363544	72363574	72363573	-	RAMPAGE_only	3	4	10	0.664760	2.725481	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72356945	72364976	STRG.85453.7	-	72356945,72359417,72360109,72360627,72364695	72357056,72359521,72360221,72363606,72364976	0.900000
breast_epithelium_female_adult_51_years	chr8	114005853	114005864	114005863	+	High_confidence	8	9	21	1.395995	3.975418	chr8	114000279	114006307	LINE|L1|L1PA2	-	chr8	114006142	114006346	STRG.80767.1	+	114006142	114006346	0.666667
breast_epithelium_female_adult_51_years	chr3	189121267	189121295	189121294	+	RAMPAGE_only	4	4	14	0.930663	3.392747	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.785714
breast_epithelium_female_adult_51_years	chr8	134817336	134817350	134817336	-	RAMPAGE_only	2	2	7	0.465332	2.521641	chr8	134817054	134817394	LTR|ERVL|MLT2C1	+	chr8	134792019	134832302	STRG.82211.1	-	134792019,134813831	134813799,134832302	1.000000
breast_epithelium_female_adult_51_years	chr14	53217609	53217622	53217609	+	High_confidence	5	5	10	0.664760	2.721928	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217711	53687258	AL365295.1|ENST00000456100.5	+	53217711,53318030,53369451,53687198	53218055,53318138,53369501,53687258	0.500000
breast_epithelium_female_adult_51_years	chr3	197299316	197299321	197299316	-	High_confidence	12	14	27	1.794851	4.243856	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.777778
breast_epithelium_female_adult_51_years	chr6	131844462	131844473	131844472	+	High_confidence	47	49	176	11.699769	5.695336	chr6	131844197	131845043	DNA|TcMar-Tigger|Tigger6a	+	chr6	131844370	131893818	STRG.64578.4	+	131844370,131847775,131849989,131851141,131852174,131854925,131858667,131860386,131861594,131864505,131864865,131868017,131869357,131872069,131872922,131874267,131875775,131876991,131878541,131879879,131882344,131883693,131884930,131886561,131890340	131844980,131847848,131850106,131851267,131852235,131855023,131858747,131860506,131861704,131864571,131864938,131868126,131869489,131872101,131873050,131874337,131875863,131877161,131878593,131880034,131882474,131883774,131885063,131886724,131893818	0.965909
breast_epithelium_female_adult_51_years	chr1	43119997	43120043	43120042	+	High_confidence	9	9	28	1.861327	4.137538	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43120035	43156396	STRG.2204.1	+	43120035,43145126,43150760,43152827,43156205	43145004,43148091,43150820,43152931,43156396	0.964286
breast_epithelium_female_adult_51_years	chr8	23243634	23243635	23243634	+	High_confidence	7	7	7	0.465332	2.807355	chr8	23243551	23243732	LTR|ERV1|LTR21A	+	chr8	23243636	23262000	CHMP7|NM_152272.4	+	23243636,23246255,23249209,23255246,23256459,23258032,23258329,23258731,23259065,23260143,23260537	23243844,23246994,23249381,23255432,23256593,23258081,23258449,23258830,23259126,23260323,23262000	1.000000
breast_epithelium_female_adult_51_years	chr5	140655854	140655989	140655988	+	RAMPAGE_only	6	9	56	3.722654	4.940760	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.964286
breast_epithelium_female_adult_51_years	chr20	33401580	33401582	33401581	+	High_confidence	7	9	12	0.797712	2.913977	chr20	33401623	33401937	DNA|hAT-Charlie|MER33	+	chr20	33401589	33410322	STRG.142527.1	+	33401589,33410052	33401675,33410322	0.583333
breast_epithelium_female_adult_51_years	chr16	20674497	20674498	20674497	+	High_confidence	361	364	406	26.989240	5.815760	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.805419
breast_epithelium_female_adult_51_years	chr6	31186497	31186533	31186532	-	High_confidence	2	3	8	0.531808	2.750000	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31177472	31186176	STRG.59326.1	-	31177472,31186025	31177899,31186176	0.500000
breast_epithelium_female_adult_51_years	chr14	68882879	68882906	68882879	-	High_confidence	4	5	20	1.329519	3.787144	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.900000
breast_epithelium_female_adult_51_years	chr2	171555703	171555786	171555747	+	RAMPAGE_only	10	10	65	4.320937	4.638827	chr2	171555665	171555905	SINE|MIR|MIR	-	chr2	171522509	171557646	STRG.22429.1	+	171522509,171541584,171553345,171554523,171556445	171522738,171541793,171553500,171556362,171557646	0.923077
breast_epithelium_female_adult_51_years	chr6	144533141	144533154	144533141	+	RAMPAGE_only	2	2	7	0.465332	2.584963	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144330819	144678552	STRG.65268.2	+	144330819,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405	144331018,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144660275,144678552	0.857143
breast_epithelium_female_adult_51_years	chr20	37298760	37298761	37298760	+	RAMPAGE_only	6	6	6	0.398856	2.584963	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
breast_epithelium_female_adult_51_years	chr3	80770347	80770433	80770432	-	High_confidence	7	7	32	2.127231	4.476410	chr3	80769735	80770387	LTR|ERV1|LTR1A1	-	chr3	80757688	80770151	STRG.31683.1	-	80757688,80769758	80757746,80770151	0.656250
breast_epithelium_female_adult_51_years	chr2	9554953	9554966	9554953	-	High_confidence	11	11	31	2.060755	4.456565	chr2	9554869	9555063	DNA|hAT-Tip100?|MamRep1879	-	chr2	9488636	9554729	ADAM17|ENST00000648548.1	-	9488636,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152,9551474,9554708	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526264,9527954,9535922,9536828,9543285,9551757,9554729	0.806452
breast_epithelium_female_adult_51_years	chr2	49820424	49820425	49820424	-	RAMPAGE_only	6	6	8	0.531808	2.750000	chr2	49820422	49820786	LTR|ERVL-MaLR|THE1B	-	chr2	49810584	49838632	STRG.15994.14	-	49810584,49820305	49818053,49838632	0.625000
breast_epithelium_female_adult_51_years	chr12	79873266	79873267	79873266	-	High_confidence	9	9	13	0.864187	3.180833	chr12	79873243	79873519	DNA|hAT-Charlie|Charlie1a	+	chr12	79828370	79872872	PPP1R12A|ENST00000548318.1	-	79828370,79832331,79845301,79848787,79872807	79828464,79832491,79845420,79848931,79872872	0.923077
breast_epithelium_female_adult_51_years	chr6	18757439	18757498	18757497	-	High_confidence	113	122	400	26.590384	5.878002	chr6	18756399	18759477	LTR|ERV1|HERVH-int	-	chr6	18737437	18757539	STRG.58479.1	-	18737437,18744047,18748088,18757252	18741550,18746952,18748154,18757539	0.910000
breast_epithelium_female_adult_51_years	chr9	111284874	111284875	111284874	-	High_confidence	8	8	9	0.598284	2.750000	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.888889
breast_epithelium_female_adult_51_years	chr6	31587224	31587268	31587258	+	High_confidence	3	3	11	0.731236	3.121928	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	0.727273
breast_epithelium_female_adult_51_years	chr16	53803262	53803269	53803268	+	RAMPAGE_only	4	4	8	0.531808	2.807355	chr16	53802451	53803355	LINE|L1|L1MEc	-	chr16	53704184	53844241	FTO|ENST00000640179.1	+	53704184,53810139,53844154	53704229,53810217,53844241	0.625000
breast_epithelium_female_adult_51_years	chr17	28525381	28525382	28525381	+	RAMPAGE_only	13	13	14	0.930663	3.180833	chr17	28525111	28525398	DNA|TcMar-Tigger|Tigger19b	+	chr17	28523940	28538896	FOXN1|ENST00000226247.2	+	28523940,28524502,28527250,28529093,28530748,28534330,28534706,28537116	28524092,28524967,28527361,28529224,28530845,28534538,28535198,28538896	0.714286
breast_epithelium_female_adult_51_years	chr19	5680232	5680241	5680240	-	High_confidence	4	4	9	0.598284	2.750000	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.888889
breast_epithelium_female_adult_51_years	chr15	42404804	42404806	42404804	+	High_confidence	5	9	11	0.731236	2.921928	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404797	42412317	CAPN3|ENST00000561817.5	+	42404797,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42412085	42404955,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412317	0.636364
breast_epithelium_female_adult_51_years	chr10	37279458	37279555	37279554	+	RAMPAGE_only	3	3	23	1.528947	4.186704	chr10	37275880	37284069	LTR|ERV1|HERV9-int	-	chr10	37248117	37315801	STRG.91112.15	+	37248117,37261863,37262482,37264529,37314377,37315695	37252396,37261925,37262539,37309328,37314441,37315801	0.956522
breast_epithelium_female_adult_51_years	chr9	20658589	20658624	20658607	+	High_confidence	8	11	28	1.861327	3.910233	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658334	20954160	STRG.83601.5	+	20658334,20715321,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20946700,20948270,20948850,20949603,20950995,20952984	20658826,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20944774,20946820,20948393,20948928,20949675,20951098,20954160	0.821429
breast_epithelium_female_adult_51_years	chr10	37288676	37288731	37288722	+	RAMPAGE_only	4	4	25	1.661899	3.938722	chr10	37285722	37289009	LINE|L1|L1PA10	-	chr10	37248117	37315801	STRG.91112.15	+	37248117,37261863,37262482,37264529,37314377,37315695	37252396,37261925,37262539,37309328,37314441,37315801	0.960000
breast_epithelium_female_adult_51_years	chr11	3380960	3380961	3380960	+	High_confidence	8	8	8	0.531808	2.750000	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.625000
breast_epithelium_female_adult_51_years	chr4	142474968	142474969	142474968	-	High_confidence	9	9	10	0.664760	2.641604	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142382664	142474408	STRG.45651.12	-	142382664,142402937,142405205,142429172,142431168,142462662,142474225	142384116,142403054,142405324,142429217,142431385,142462726,142474408	0.600000
breast_epithelium_female_adult_51_years	chr7	101308299	101308317	101308299	+	High_confidence	7	10	27	1.794851	4.282484	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	1.000000
breast_epithelium_female_adult_51_years	chr18	80147918	80147932	80147931	+	High_confidence	3	5	11	0.731236	3.277613	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.727273
breast_epithelium_female_adult_51_years	chr17	72045441	72045475	72045474	-	RAMPAGE_only	2	2	6	0.398856	2.584963	chr17	72045355	72045733	LTR|ERVL-MaLR|MSTA	-	chr17	72034106	72057719	STRG.132530.8	-	72034106,72057458	72045524,72057719	0.666667
breast_epithelium_female_adult_51_years	chr2	200857745	200857769	200857745	-	High_confidence	3	3	10	0.664760	3.169925	chr2	200857615	200857696	LINE|L1|L1MA8	-	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.800000
breast_epithelium_female_adult_51_years	chr9	129495778	129495820	129495813	+	RAMPAGE_only	3	3	9	0.598284	2.750000	chr9	129495725	129495901	SINE|MIR|MIRc	-	chr9	129490818	129503622	LINC00963|ENST00000454635.6	+	129490818,129493418,129502396,129503322	129491128,129493595,129502519,129503622	0.555556
breast_epithelium_female_adult_51_years	chr4_GL000008v2_random	170347	170348	170347	-	RAMPAGE_only	7	7	9	0.598284	2.725481	chr4_GL000008v2_random	170280	170685	LTR|ERV1|MER61C	+	chr4_GL000008v2_random	161986	178171	ANKRD20A12P|NR_046228.1	-	161986,163784,164602,175824,177526	162439,163998,164884,175974,178171	1.000000
breast_epithelium_female_adult_51_years	chr9	128684459	128684493	128684492	-	High_confidence	12	13	57	3.789130	5.222446	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683083	128684469	STRG.88500.1	-	128683083	128684469	0.578947
breast_epithelium_female_adult_51_years	chr15	33194708	33194715	33194708	-	High_confidence	3	3	8	0.531808	2.750000	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.875000
breast_epithelium_female_adult_51_years	chr6	18759546	18759547	18759546	-	RAMPAGE_only	4	5	7	0.465332	2.584963	chr6	18759479	18759870	LTR|ERV1|LTR7	-	chr6	18737437	18757539	STRG.58479.1	-	18737437,18744047,18748088,18757252	18741550,18746952,18748154,18757539	0.714286
breast_epithelium_female_adult_51_years	chr9	127451107	127451150	127451107	-	High_confidence	3	3	11	0.731236	2.913977	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.909091
breast_epithelium_female_adult_51_years	chr3	33864015	33864065	33864064	+	High_confidence	2	2	8	0.531808	2.750000	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33863895	33866468	PDCD6IP|ENST00000473593.1	+	33863895,33865242,33866350	33864129,33865430,33866468	0.500000
breast_epithelium_female_adult_51_years	chr9	63382537	63382568	63382567	-	RAMPAGE_only	2	2	7	0.465332	2.521641	chr9	63382068	63383594	LINE|L1|L1MDa	+	chr9	63357817	63380075	STRG.84923.4	-	63357817,63373320,63374382,63375917,63379122,63379939	63372978,63373468,63374505,63376098,63379294,63380075	0.857143
breast_epithelium_female_adult_51_years	chr9	39810023	39810116	39810033	-	High_confidence	21	21	57	3.789130	5.124006	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.824561
breast_epithelium_female_adult_51_years	chr19	9140393	9140428	9140393	+	High_confidence	44	44	122	8.110067	6.144524	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	STRG.136930.3	+	9140396,9155924,9156611,9157979,9158825,9160113	9140592,9156041,9157394,9158075,9158908,9163408	0.786885
breast_epithelium_female_adult_51_years	chr1	153967486	153967512	153967486	+	High_confidence	8	10	36	2.393135	3.647463	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.833333
breast_epithelium_female_adult_51_years	chr4	138930147	138930229	138930170	+	High_confidence	8	8	36	2.393135	4.440351	chr4	138928237	138931267	LTR|ERV1|HERVH-int	+	chr4	138929991	138942207	STRG.45394.1	+	138929991,138939727	138930416,138942207	0.972222
breast_epithelium_female_adult_51_years	chr11	12989543	12989546	12989543	-	High_confidence	13	15	20	1.329519	3.746439	chr11	12989406	12989730	LTR|ERVL-MaLR|THE1D	-	chr11	12980210	12989539	LINC00958|ENST00000534477.5	-	12980210,12986039,12989455	12980909,12986144,12989539	0.550000
breast_epithelium_female_adult_51_years	chr16	30445873	30445877	30445873	-	High_confidence	61	77	116	7.711211	6.186119	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.974138
breast_epithelium_female_adult_51_years	chr1	24151504	24151543	24151504	+	High_confidence	9	10	43	2.858466	4.553944	chr1	24151159	24151642	LTR|ERV1|LTR10D	-	chr1	24151505	24160441	STRG.1310.1	+	24151505,24155011,24157254	24151739,24155192,24160441	0.837209
breast_epithelium_female_adult_51_years	chr2	166185015	166185037	166185025	+	RAMPAGE_only	12	12	46	3.057894	5.175736	chr2	166184665	166185205	LINE|L2|L2a	-	chr2	166149180	166294588	AC010127.1|ENST00000630020.2	+	166149180,166171386,166199638,166248194,166249342,166251833,166277087,166294564	166149572,166171558,166199818,166248276,166249384,166251912,166277247,166294588	0.630435
breast_epithelium_female_adult_51_years	chr4	81154211	81154248	81154221	-	High_confidence	16	20	57	3.789130	5.007986	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.894737
breast_epithelium_female_adult_51_years	chr12	50924078	50924080	50924078	+	High_confidence	5	9	9	0.598284	2.947703	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	1.000000
breast_epithelium_female_adult_51_years	chr1	116390239	116390247	116390246	+	RAMPAGE_only	4	4	8	0.531808	3.000000	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
breast_epithelium_female_adult_51_years	chr8	85839704	85839705	85839704	+	RAMPAGE_only	26	26	38	2.526086	4.826875	chr8	85839524	85839864	LTR|ERVL-MaLR|THE1B	+	chr8	85833376	85908602	AC100801.1|ENST00000648211.1	+	85833376,85885934,85908312	85833775,85889653,85908602	0.657895
breast_epithelium_female_adult_51_years	chr5	32403105	32403116	32403105	-	RAMPAGE_only	3	3	14	0.930663	3.700440	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.928571
breast_epithelium_female_adult_51_years	chr9	13616106	13616107	13616106	+	RAMPAGE_only	16	16	20	1.329519	4.037401	chr9	13616016	13616359	LTR|ERVL-MaLR|MLT1A	+	chr9	13551822	13716384	STRG.83154.3	+	13551822,13605328,13623127	13605246,13623019,13716384	0.800000
breast_epithelium_female_adult_51_years	chr8	74599760	74599784	74599783	+	RAMPAGE_only	2	3	8	0.531808	2.521641	chr8	74594235	74600252	LINE|L1|L1PA3	-	chr8	74612952	74613291	STRG.78894.1	+	74612952	74613291	0.625000
breast_epithelium_female_adult_51_years	chr10	37267146	37267153	37267146	+	RAMPAGE_only	2	2	7	0.465332	2.521641	chr10	37266963	37267259	SINE|Alu|AluSq2	-	chr10	37248117	37315801	STRG.91112.15	+	37248117,37261863,37262482,37264529,37314377,37315695	37252396,37261925,37262539,37309328,37314441,37315801	1.000000
breast_epithelium_female_adult_51_years	chr1	147173225	147173226	147173225	+	High_confidence	4	4	7	0.465332	2.584963	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.571429
breast_epithelium_female_adult_51_years	chr8	116319266	116319270	116319266	-	RAMPAGE_only	9	10	15	0.997139	3.773557	chr8	116317511	116319948	LINE|L1|L1PA11	+	chr8	115950510	116325059	LINC00536|NR_046215.1	-	115950510,115951462,115954928,115963792,115969683,115976069,115977242,116119688,116125371,116130197,116259491,116260346,116273480,116324829	115950739,115951570,115955005,115964158,115969777,115976135,115977436,116119783,116125418,116130280,116260031,116260677,116273712,116325059	0.666667
breast_epithelium_female_adult_51_years	chr4	9102701	9102713	9102712	+	High_confidence	5	5	24	1.595423	4.168296	chr4	9097916	9105755	LTR|ERV1|HERVE-int	+	chr4	9102731	9103209	STRG.38921.1	+	9102731	9103209	0.500000
breast_epithelium_female_adult_51_years	chr12	8681676	8681677	8681676	+	High_confidence	9	9	10	0.664760	2.947703	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.900000
breast_epithelium_female_adult_51_years	chr7	7566505	7566515	7566514	-	High_confidence	3	4	9	0.598284	3.000000	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7552461	7566996	AC004982.2|ENST00000609497.5	-	7552461,7555155,7565913	7552922,7555189,7566996	0.888889
breast_epithelium_female_adult_51_years	chr11	102832746	102832782	102832746	+	RAMPAGE_only	9	9	32	2.127231	4.301109	chr11	102832592	102832982	DNA|TcMar-Tigger|MER6A	+	chr11	102831702	103069163	STRG.101185.1	+	102831702,103048413,103069115	102832906,103048541,103069163	0.781250
breast_epithelium_female_adult_51_years	chr2	87469947	87469950	87469949	+	RAMPAGE_only	63	109	119	7.910639	4.173966	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87455428	87479353	STRG.18317.3	+	87455428,87469797	87469219,87479353	0.932773
breast_epithelium_female_adult_51_years	chr1	109725827	109725828	109725827	+	High_confidence	11	12	15	0.997139	3.640224	chr1	109725516	109725947	LTR|ERVK|LTR3	+	chr1	109725819	109775252	AL158847.1|ENST00000431955.1	+	109725819,109732174,109736939,109775071	109726068,109732350,109737141,109775252	0.533333
breast_epithelium_female_adult_51_years	chr14	103931833	103931834	103931833	+	RAMPAGE_only	11	11	13	0.864187	3.085055	chr14	103931646	103932201	LTR|ERVL-MaLR|MLT1E2	+	chr14	103928479	104052667	TDRD9|NM_153046.2	+	103928479,103955663,103963078,103965332,103966708,103970540,103975388,103986216,103991159,103994331,103994518,103995749,103998623,104004237,104005273,104006388,104006645,104006781,104007159,104008412,104014724,104015980,104018091,104022156,104024568,104025563,104026046,104026678,104031107,104032016,104033959,104034959,104040195,104042068,104049607,104051980	103928724,103955770,103963176,103965554,103966831,103970621,103975553,103986320,103991224,103994386,103994603,103995807,103998728,104004335,104005405,104006554,104006709,104006845,104007204,104008466,104014841,104016088,104018192,104022330,104024680,104025776,104026136,104026939,104031263,104032087,104034069,104035056,104040334,104042187,104049680,104052667	0.846154
breast_epithelium_female_adult_51_years	chr11	7906059	7906060	7906059	-	High_confidence	5	5	8	0.531808	2.500000	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	1.000000
breast_epithelium_female_adult_51_years	chr16	2757779	2757815	2757801	+	High_confidence	5	5	21	1.395995	3.984184	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.952381
breast_epithelium_female_adult_51_years	chr20	52895394	52895410	52895409	-	High_confidence	8	17	38	2.526086	4.926734	chr20	52895240	52895371	DNA|hAT-Tip100|MamTip3	-	chr20	52838956	52895828	STRG.143526.2	-	52838956,52843630,52895139	52842129,52845103,52895828	0.789474
breast_epithelium_female_adult_51_years	chr17	4143196	4143215	4143199	+	High_confidence	121	123	279	18.546793	5.736323	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.964158
breast_epithelium_female_adult_51_years	chr2	170751706	170751708	170751706	+	High_confidence	8	11	13	0.864187	3.085055	chr2	170750015	170751707	LINE|L1|L1MEc	+	chr2	170751804	170752788	EIF2S2P4|ENST00000461070.1	+	170751804	170752788	0.923077
breast_epithelium_female_adult_51_years	chr14	95516119	95516123	95516119	+	High_confidence	2	4	9	0.598284	2.947703	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	1.000000
breast_epithelium_female_adult_51_years	chr13	45379801	45379807	45379801	+	High_confidence	6	7	11	0.731236	2.913977	chr13	45379416	45380004	LTR|ERV1|HERVE-int	-	chr13	45379283	45391352	STRG.111194.6	+	45379283,45383090,45389734,45390713,45391031	45380001,45383235,45389820,45390902,45391352	0.545455
breast_epithelium_female_adult_51_years	chr20	18794077	18794086	18794085	+	High_confidence	38	38	111	7.378832	5.781411	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.972973
breast_epithelium_female_adult_51_years	chr10	37146973	37146974	37146973	+	High_confidence	24	24	31	2.060755	4.542748	chr10	37146483	37146996	LTR|ERVK|LTR22B	-	chr10	37146653	37315801	STRG.91112.6	+	37146653,37147369,37149650,37149776,37152059,37153571,37158391,37158513,37162648,37162775,37165093,37166604,37169529,37169651,37173711,37173838,37176156,37177665,37181321,37181443,37185512,37185639,37187957,37189466,37193063,37193185,37197280,37197407,37199726,37201234,37216180,37217694,37218979,37231460,37232498,37235794,37241170,37242757,37248117,37261863,37262482,37264529,37266522,37314377,37315695	37147068,37147457,37149679,37149849,37152121,37153662,37158420,37158586,37162677,37162848,37165155,37166695,37169558,37169724,37173740,37173911,37176218,37177756,37181350,37181516,37185541,37185712,37188019,37189557,37193092,37193258,37197309,37197480,37199788,37201325,37216394,37217878,37219897,37231680,37232567,37241016,37241273,37242847,37252396,37261925,37262539,37266350,37309180,37314441,37315801	0.935484
breast_epithelium_female_adult_51_years	chr9	129489073	129489126	129489125	+	High_confidence	6	7	37	2.459611	4.593429	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129504274	STRG.88535.4	+	129489106,129493418,129502396,129503322	129489299,129493595,129503139,129504274	0.864865
breast_epithelium_female_adult_51_years	chr3	149284664	149284665	149284664	+	High_confidence	14	14	19	1.263043	3.426367	chr3	149283837	149285090	LTR|ERV1|LTR12C	+	chr3	149284781	149367381	STRG.35006.6	+	149284781,149295462	149295409,149367381	1.000000
breast_epithelium_female_adult_51_years	chr9	92536651	92536704	92536701	-	High_confidence	6	6	32	2.127231	4.037862	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.906250
breast_epithelium_female_adult_51_years	chr7	101287058	101287078	101287058	+	RAMPAGE_only	13	14	36	2.393135	4.572469	chr7	101286998	101287140	SINE|MIR|MIRb	-	chr7	101299577	101301346	LNCPRESS1|ENST00000429254.2	+	101299577,101300768	101299866,101301346	0.694444
breast_epithelium_female_adult_51_years	chr7	73739706	73739715	73739714	-	High_confidence	4	5	9	0.598284	2.750000	chr7	73739595	73739750	SINE|Alu|AluJr	-	chr7	73739199	73739746	STRG.70529.1	-	73739199	73739746	0.666667
breast_epithelium_female_adult_51_years	chr11	100715407	100715410	100715407	+	RAMPAGE_only	8	8	18	1.196567	3.734522	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.555556
breast_epithelium_female_adult_51_years	chr19	3062922	3062978	3062939	-	High_confidence	7	10	33	2.193707	4.256515	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.969697
breast_epithelium_female_adult_51_years	chr14	67857900	67857914	67857902	+	RAMPAGE_only	3	5	10	0.664760	2.725481	chr14	67857721	67858812	LTR|ERV1|LTR28	-	chr14	67865031	68683118	RAD51B|ENST00000553595.5	+	67865031,67885868,67887020,68291883,68411423,68682936	67865139,67885988,67887204,68291980,68411527,68683118	0.500000
breast_epithelium_female_adult_51_years	chr2	55618850	55618895	55618850	-	High_confidence	3	3	23	1.528947	4.436605	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.913043
breast_epithelium_female_adult_51_years	chr15	80059918	80059933	80059918	+	High_confidence	114	131	340	22.601827	5.807277	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.970588
breast_epithelium_female_adult_51_years	chr16	53803397	53803450	53803431	+	RAMPAGE_only	4	5	26	1.728375	4.161978	chr16	53803423	53803486	LINE|L1|L1MEg	+	chr16	53704157	54111835	FTO|ENST00000637562.1	+	53704157,53810139,53825863,53844154,53873785,53879843,53888831,53933984,54061661,54111761	53704229,53810217,53826491,53844298,53873865,53879987,53888951,53934109,54061720,54111835	0.961538
breast_epithelium_female_adult_51_years	chr8	2726956	2726963	2726962	+	High_confidence	17	17	39	2.592562	4.864727	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.666667
breast_epithelium_female_adult_51_years	chr4	152412488	152412529	152412528	-	High_confidence	5	5	27	1.794851	4.680813	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
breast_epithelium_female_adult_51_years	chr5	79548230	79548249	79548230	+	High_confidence	3	4	14	0.930663	3.392747	chr5	79548137	79548255	DNA|hAT-Charlie|MER5B	-	chr5	79548233	79579258	STRG.51307.1	+	79548233,79574135,79579014	79548302,79574276,79579258	0.642857
breast_epithelium_female_adult_51_years	chr6	76877073	76877075	76877074	-	RAMPAGE_only	13	15	20	1.329519	4.121928	chr6	76875759	76877075	LINE|L1|L1HS	-	chr6	76872051	76880049	STRG.61581.1	-	76872051	76880049	1.000000
breast_epithelium_female_adult_51_years	chr1	43537640	43537641	43537640	+	High_confidence	9	9	9	0.598284	2.725481	chr1	43537442	43537857	LINE|L2|L2b	-	chr1	43538197	43580078	PTPRF|ENST00000372405.1	+	43538197,43545030,43553491,43553799,43569589,43578809	43538277,43545166,43553637,43553941,43569778,43580078	0.666667
breast_epithelium_female_adult_51_years	chr8	134815770	134815958	134815823	-	RAMPAGE_only	9	9	76	5.052173	5.153521	chr8	134815500	134816070	LINE|L2|L2a	+	chr8	134792019	134832302	STRG.82211.1	-	134792019,134813831	134813799,134832302	0.973684
breast_epithelium_female_adult_51_years	chr18	80148048	80148049	80148048	+	High_confidence	93	97	108	7.179404	6.144014	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.657407
breast_epithelium_female_adult_51_years	chr4	142474407	142474454	142474407	-	High_confidence	540	578	1710	113.673892	6.828716	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142028955	142474408	STRG.45651.5	-	142028955,142086143,142108092,142112541,142122127,142123291,142124587,142145839,142160357,142173631,142193086,142208424,142208895,142237863,142260491,142270662,142305457,142314711,142402937,142405205,142429172,142431168,142462662,142474225	142082185,142086256,142108190,142112682,142122245,142123415,142124760,142145996,142160561,142173809,142193195,142208529,142209026,142238011,142260564,142270774,142305537,142314762,142403054,142405324,142429217,142431385,142462726,142474408	0.898246
breast_epithelium_female_adult_51_years	chr2	86482561	86482578	86482577	+	RAMPAGE_only	7	7	12	0.797712	3.251629	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.666667
breast_epithelium_female_adult_51_years	chr21	16011367	16011388	16011367	+	RAMPAGE_only	3	3	9	0.598284	2.947703	chr21	16010777	16011575	LTR|ERVL-MaLR|MLT1I-int	+	chr21	16070487	16610777	MIR99AHG|NR_136542.1	+	16070487,16071113,16181590,16231055,16391613,16487489,16594339,16606993	16070567,16071398,16181687,16231115,16391685,16487538,16594454,16610777	0.777778
breast_epithelium_female_adult_51_years	chr2	24887184	24887185	24887184	-	RAMPAGE_only	20	20	23	1.528947	3.969002	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24841324	24878027	ADCY3|ENST00000433852.1	-	24841324,24841555,24842253,24872569,24877921	24841386,24841667,24842384,24872719,24878027	0.869565
breast_epithelium_female_adult_51_years	chr6	127330812	127330938	127330812	-	High_confidence	3	3	23	1.528947	4.055958	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.739130
breast_epithelium_female_adult_51_years	chr14	55671844	55671872	55671871	+	High_confidence	6	6	19	1.263043	3.536887	chr14	55671902	55672073	DNA|hAT-Charlie|MER5A	+	chr14	55671861	55674304	KTN1|ENST00000555506.1	+	55671861,55672629,55672928	55671877,55672701,55674304	0.526316
breast_epithelium_female_adult_51_years	chr10	88939904	88939950	88939904	-	RAMPAGE_only	4	7	19	1.263043	3.932138	chr10	88939875	88939917	LINE|L2|L2a	+	chr10	88935073	88952773	ACTA2|ENST00000224784.10	-	88935073,88938060,88939506,88941228,88941784,88943796,88947257,88948801,88952730	88935366,88938242,88939698,88941390,88941869,88943907,88947386,88948953,88952773	0.842105
breast_epithelium_female_adult_51_years	chr7	158863386	158863410	158863409	+	RAMPAGE_only	4	4	11	0.731236	2.845351	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.909091
breast_epithelium_female_adult_51_years	chr3	180870518	180870522	180870518	-	High_confidence	7	11	19	1.263043	4.142664	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180707588	180870178	LOC101928882|NR_109986.1	-	180707588,180711192,180711309,180725514,180733478,180734486,180737492,180747879,180748245,180751347,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180733682,180734606,180737814,180748043,180748319,180751410,180782124,180810470,180847624,180870178	0.526316
breast_epithelium_female_adult_51_years	chr17	4736361	4736404	4736361	-	High_confidence	6	8	28	1.861327	3.791925	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.892857
breast_epithelium_female_adult_51_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	14	14	14	0.930663	3.235926	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
breast_epithelium_female_adult_51_years	chr4	142475745	142475746	142475745	-	RAMPAGE_only	12	14	17	1.130091	3.734522	chr4	142475331	142477907	LINE|L1|L1PA14	+	chr4	142382664	142474408	STRG.45651.12	-	142382664,142402937,142405205,142429172,142431168,142462662,142474225	142384116,142403054,142405324,142429217,142431385,142462726,142474408	0.529412
breast_epithelium_female_adult_51_years	chr1	7913248	7913268	7913248	-	RAMPAGE_only	11	11	30	1.994279	4.348394	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.500000
breast_epithelium_female_adult_51_years	chr19	44914321	44914322	44914321	+	High_confidence	101	102	128	8.508923	5.644892	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.859375
breast_epithelium_female_adult_51_years	chr11	7906253	7906289	7906253	-	High_confidence	144	158	219	14.558235	6.904273	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7696504	7905955	STRG.96017.12	-	7696504,7700295,7701323,7701715,7702156,7703697,7704564,7879006,7879594,7881088,7881955,7882859,7905602	7698773,7700485,7701475,7701811,7702329,7703789,7704674,7879083,7879759,7881149,7882073,7882933,7905955	0.593607
breast_epithelium_female_adult_51_years	chr14	21360429	21360477	21360452	-	RAMPAGE_only	3	3	15	0.997139	3.521641	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351471	21384266	SUPT16H|ENST00000216297.6	-	21351471,21353487,21353702,21354410,21357196,21357926,21358314,21359483,21360414,21360845,21361077,21362196,21362793,21363033,21363232,21363437,21364826,21365069,21366438,21368268,21369203,21369749,21370335,21371873,21373337,21383861	21352818,21353565,21353832,21354540,21357366,21358002,21358427,21359609,21360533,21360972,21361213,21362324,21362947,21363149,21363328,21363503,21364939,21365143,21366529,21368441,21369355,21369896,21370488,21372044,21373430,21384266	0.933333
breast_epithelium_female_adult_51_years	chr19	20153793	20153830	20153793	+	High_confidence	29	29	62	4.121510	5.149026	chr19	20153502	20154120	LTR|ERVL|LTR66	+	chr19	20153588	20161741	STRG.137778.2	+	20153588,20154793,20161196	20153893,20155111,20161741	0.564516
breast_epithelium_female_adult_51_years	chr17	13931151	13931155	13931151	-	RAMPAGE_only	7	7	16	1.063615	3.056565	chr17	13931030	13931624	LTR|ERVL-MaLR|MLT1L	+	chr17	13879890	13892881	STRG.129389.3	-	13879890,13892724	13880371,13892881	0.812500
breast_epithelium_female_adult_51_years	chr16	27720571	27720590	27720571	+	RAMPAGE_only	8	8	14	0.930663	3.378783	chr16	27720509	27720640	LINE|L2|L2b	-	chr16	27550151	27780369	KIAA0556|ENST00000261588.8	+	27550151,27573900,27618424,27628660,27631064,27648603,27677728,27681398,27698327,27699533,27701588,27703895,27708704,27721557,27740040,27749583,27751718,27754172,27761412,27766308,27769860,27771587,27773098,27774944,27776927,27777609,27777880,27778573	27550177,27573956,27618501,27628830,27631162,27648735,27677996,27681530,27698500,27699599,27701695,27703998,27708920,27721695,27740920,27750306,27751924,27754251,27761590,27766474,27770018,27771652,27773209,27775084,27777029,27777770,27777969,27780369	1.000000
breast_epithelium_female_adult_51_years	chr3	149285033	149285054	149285045	+	High_confidence	3	3	12	0.797712	3.027169	chr3	149285090	149285688	LTR|ERV1|HERV9NC-int	+	chr3	149284781	149367381	STRG.35006.6	+	149284781,149295462	149295409,149367381	0.916667
breast_epithelium_female_adult_51_years	chr7	40509494	40509498	40509494	+	RAMPAGE_only	4	4	13	0.864187	3.418296	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.538462
breast_epithelium_female_adult_51_years	chr9	69408126	69408185	69408126	-	High_confidence	80	85	272	18.081461	6.661314	chr9	69407074	69409905	LTR|ERV1|HERVH-int	-	chr9	69390166	69408386	STRG.85187.4	-	69390166,69398733,69407935	69398398,69398833,69408386	0.709559
breast_epithelium_female_adult_51_years	chr10	77498907	77498961	77498960	-	High_confidence	14	24	41	2.725514	5.113650	chr10	77498859	77499086	SINE|MIR|MIR	+	chr10	77183472	77498970	KCNMA1|ENST00000640311.1	-	77183472,77184822,77251194,77403861,77493797,77498583	77183532,77184916,77251256,77404023,77493929,77498970	0.658537
breast_epithelium_female_adult_51_years	chrX	46780564	46780589	46780571	-	High_confidence	8	9	25	1.661899	3.893661	chrX	46780169	46780592	LTR|ERVL|LTR16A	+	chrX	46775252	46780586	STRG.150478.1	-	46775252,46780378	46775494,46780586	0.680000
breast_epithelium_female_adult_51_years	chr20	45833305	45833311	45833305	-	High_confidence	3	3	9	0.598284	2.750000	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823313	45833427	STRG.143242.1	-	45823313,45823990,45824291,45824494,45824782,45833250	45823379,45824127,45824406,45824638,45824834,45833427	0.888889
breast_epithelium_female_adult_51_years	chr12	109179253	109179282	109179281	+	RAMPAGE_only	3	4	8	0.531808	2.521641	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109139396	109260147	ACACB|ENST00000377854.9	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260147	0.625000
breast_epithelium_female_adult_51_years	chr8	134841349	134841353	134841351	+	RAMPAGE_only	4	10	14	0.930663	3.700440	chr8	134840384	134841665	LTR|ERVL-MaLR|MLT1I-int	+	chr8	134849934	134883637	STRG.82164.2	+	134849934,134881183	134851630,134883637	0.571429
breast_epithelium_female_adult_51_years	chr8	2119289	2119301	2119299	+	High_confidence	18	24	52	3.456750	4.623517	chr8	2119298	2119410	LINE|L2|L2c	-	chr8	2119311	2145456	STRG.75961.1	+	2119311,2123251,2123554,2124178,2129126,2140722,2141140,2142374,2143400,2144663	2119451,2123365,2123642,2124217,2129232,2140886,2141177,2142397,2143456,2145456	0.961538
breast_epithelium_female_adult_51_years	chr6	79631273	79631329	79631302	+	High_confidence	80	80	345	22.934206	6.656582	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.953623
breast_epithelium_female_adult_51_years	chr14	20706941	20706942	20706941	-	RAMPAGE_only	31	35	39	2.592562	5.009636	chr14	20706808	20707335	LTR|ERV1|LTR26B	-	chr14	20698502	20700616	STRG.113621.1	-	20698502	20700616	0.589744
breast_epithelium_female_adult_51_years	chr3	149284955	149284994	149284955	+	High_confidence	2	3	13	0.864187	3.251629	chr3	149283837	149285090	LTR|ERV1|LTR12C	+	chr3	149284781	149367381	STRG.35006.6	+	149284781,149295462	149295409,149367381	0.923077
breast_epithelium_female_adult_51_years	chr18	61652303	61652325	61652303	+	RAMPAGE_only	43	49	126	8.375971	6.078404	chr18	61652260	61652563	SINE|Alu|AluJr	-	chr18	61660880	61663527	STRG.135705.2	+	61660880	61663527	0.619048
breast_epithelium_female_adult_51_years	chr11	123469402	123469403	123469402	+	RAMPAGE_only	22	23	24	1.595423	3.442862	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123480737	123594838	GRAMD1B|ENST00000633087.1	+	123480737,123577366,123584311,123594081,123594734	123480893,123577577,123584332,123594166,123594838	0.625000
breast_epithelium_female_adult_51_years	chr8	134824060	134824109	134824060	-	RAMPAGE_only	3	3	16	1.063615	3.625000	chr8	134824000	134824098	LINE|L2|L2c	-	chr8	134792019	134832302	STRG.82211.1	-	134792019,134813831	134813799,134832302	1.000000
breast_epithelium_female_adult_51_years	chr11	74070873	74070892	74070873	-	High_confidence	13	14	20	1.329519	3.787144	chr11	74070756	74071175	LINE|L2|L2c	+	chr11	74049518	74070869	C2CD3|ENST00000542484.1	-	74049518,74054606,74057405,74070505	74049542,74054671,74057544,74070869	0.800000
breast_epithelium_female_adult_51_years	chr16	11627097	11627121	11627097	-	RAMPAGE_only	3	5	20	1.329519	3.932138	chr16	11627088	11627513	LTR|ERVL-MaLR|MLT1K	+	chr16	11549612	11629210	LITAF|ENST00000576036.5	-	11549612,11553532,11556510,11629122	11549745,11553689,11556735,11629210	0.700000
breast_epithelium_female_adult_51_years	chr9	14285200	14285214	14285200	-	RAMPAGE_only	2	2	9	0.598284	2.750000	chr9	14285128	14285421	SINE|Alu|AluSx	-	chr9	14150179	14313667	STRG.83460.14	-	14150179,14155824,14179726,14201364,14271288,14287817,14313481	14150265,14155893,14201234,14271118,14287153,14307520,14313667	0.888889
cardiac_muscle_cell	chr21	46142704	46142708	46142707	-	High_confidence	239	243	364	8.064525	5.898251	chr21	46142201	46143045	LTR|ERV1|LTR12	-	chr21	46136261	46142741	FTCD|ENST00000460011.5	-	46136261,46136914,46137238,46138507,46142108	46136494,46137073,46137334,46138646,46142741	0.950549
cardiac_muscle_cell	chr9	93448426	93448447	93448446	-	RAMPAGE_only	3	3	8	0.177242	2.500000	chr9	93448211	93448518	SINE|Alu|AluSz	+	chr9	93446923	93451208	FAM120AOS|ENST00000483056.5	-	93446923,93448368,93450478,93450944	93447697,93448489,93450599,93451208	0.875000
cardiac_muscle_cell	chr16	84139278	84139299	84139298	-	RAMPAGE_only	4	4	13	0.288019	3.084963	chr16	84139153	84139637	LTR|ERVL-MaLR|MLT1D	+	chr16	84130318	84144438	HSDL1|ENST00000568857.5	-	84130318,84131101,84135543,84144290	84130431,84131327,84135605,84144438	0.538462
cardiac_muscle_cell	chr2	173223307	173223335	173223334	+	RAMPAGE_only	6	6	10	0.221553	2.921928	chr2	173223213	173223451	SINE|MIR|MIR	+	chr2	173075841	173227146	MAP3K20|ENST00000338983.7	+	173075841,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173221149	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173227146	1.000000
cardiac_muscle_cell	chr19	17336685	17336727	17336685	+	High_confidence	31	31	73	1.617336	4.864578	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.835616
cardiac_muscle_cell	chr15	63046840	63046850	63046840	+	RAMPAGE_only	4	7	12	0.265863	2.625815	chr15	63046756	63046919	DNA|hAT-Charlie|MER5B	+	chr15	63042686	63047726	TPM1|ENST00000610733.1	+	63042686,63044026	63042943,63047726	0.750000
cardiac_muscle_cell	chr3	121731455	121731462	121731461	-	RAMPAGE_only	6	6	10	0.221553	2.646439	chr3	121731351	121731515	SINE|Alu|AluSc8	-	chr3	121697026	121730216	MSTRG.25723.7	-	121697026,121699811,121702480,121714860,121716736,121718387,121719645,121722261,121726912,121729187,121729864	121698929,121699885,121702595,121714976,121717139,121718501,121719750,121722378,121727041,121729340,121730216	1.000000
cardiac_muscle_cell	chr19	1261323	1261347	1261346	+	High_confidence	3	3	6	0.132932	2.584963	chr19	1261339	1261573	LINE|L2|L2c	-	chr19	1261341	1264572	CIRBP|ENST00000591622.1	+	1261341,1264324	1261641,1264572	0.833333
cardiac_muscle_cell	chr3	44845801	44845854	44845806	+	RAMPAGE_only	7	7	31	0.686814	4.240224	chr3	44845603	44846090	LTR|ERV1|MER65D	+	chr3	44843122	44873376	KIF15|ENST00000422209.1	+	44843122,44847984,44848520,44851786,44852207,44852672,44873328	44843234,44848057,44848558,44851952,44852339,44852794,44873376	0.645161
cardiac_muscle_cell	chr5	65988640	65988674	65988673	+	High_confidence	5	8	13	0.288019	3.085055	chr5	65988722	65989005	SINE|Alu|AluJb	+	chr5	65988632	66078936	ERBIN|ENST00000508515.1	+	65988632,65992709,65994746,66012048,66013548,66014668,66021321,66023289,66024305,66025479,66025847,66026301,66028273,66038382,66043076,66044136,66046352,66048666,66050782,66053405,66076315,66076874,66078422	65988682,65992907,65994864,66012127,66013638,66014725,66021385,66023364,66024450,66025552,66025977,66026417,66028343,66038482,66043198,66044310,66046538,66048781,66050966,66054951,66076408,66076949,66078936	1.000000
cardiac_muscle_cell	chr8	23430661	23430704	23430661	-	RAMPAGE_only	7	7	34	0.753280	3.797083	chr8	23430495	23430632	DNA|hAT-Charlie|MER58C	-	chr8	23429151	23447787	MSTRG.34496.20	-	23429151,23434316,23435391,23436933,23439748,23441568,23442006,23443849,23444455,23447679	23433154,23434681,23435477,23437258,23439915,23441723,23442066,23443953,23444606,23447787	0.970588
cardiac_muscle_cell	chr7	116952942	116952976	116952975	+	High_confidence	16	19	58	1.285007	4.909571	chr7	116952980	116953196	SINE|MIR|MIR	+	chr7	116953237	117230096	ST7|ENST00000393446.6	+	116953237,117099761,117119560,117129792,117130490,117131884,117136080,117138434,117170861,117189320,117190833,117209786,117221922,117229761	116953691,117099844,117119720,117129847,117130606,117131960,117136235,117138532,117170976,117189393,117190936,117209937,117222062,117230096	0.741379
cardiac_muscle_cell	chr12	1351136	1351145	1351144	+	RAMPAGE_only	5	5	18	0.398795	3.350209	chr12	1350694	1351148	LTR|ERVL-MaLR|MSTB2	-	chr12	1408191	1445055	ERC1|ENST00000539802.2	+	1408191,1444561	1408247,1445055	0.777778
cardiac_muscle_cell	chr19	7635818	7635826	7635818	-	RAMPAGE_only	4	4	9	0.199398	2.503258	chr19	7635792	7635861	DNA|hAT-Blackjack|MER81	+	chr19	7631614	7633748	PCP2|ENST00000311069.5	-	7631614,7632392,7632715,7633406	7631808,7632517,7632830,7633748	1.000000
cardiac_muscle_cell	chr19	50556715	50556741	50556740	-	High_confidence	5	5	15	0.332329	3.506891	chr19	50556522	50556743	LINE|L2|L2a	+	chr19	50517127	50556802	MSTRG.19226.4	-	50517127,50548541,50556534	50519415,50548873,50556802	0.933333
cardiac_muscle_cell	chr16	3018366	3018371	3018370	+	High_confidence	7	8	15	0.332329	3.056565	chr16	3018372	3018504	SINE|MIR|MIRc	+	chr16	3018444	3022086	TNFRSF12A|ENST00000573001.5	+	3018444,3021214,3021554,3021770	3018536,3021319,3021689,3022086	0.733333
cardiac_muscle_cell	chr5	116085461	116085480	116085476	+	High_confidence	4	4	16	0.354485	3.202820	chr5	116085484	116085794	DNA|hAT-Charlie|MER113	+	chr5	116085473	116292657	COMMD10|ENST00000515539.5	+	116085473,116087496,116091078,116092544,116134067,116291516,116292450	116085606,116087587,116091189,116092700,116134178,116291576,116292657	0.500000
cardiac_muscle_cell	chr20	50131130	50131162	50131139	-	High_confidence	52	52	274	6.070549	6.711264	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.916058
cardiac_muscle_cell	chr4	679983	680008	680007	+	High_confidence	3	3	15	0.332329	3.189898	chr4	680053	680142	DNA|hAT-Charlie|MER102b	+	chr4	680745	682028	MYL5|ENST00000503612.1	+	680745,681892	681140,682028	1.000000
cardiac_muscle_cell	chr5	95717623	95717677	95717676	+	High_confidence	27	27	126	2.791566	4.109430	chr5	95717605	95717747	LTR|ERVL|LTR33	-	chr5	95717632	95756093	RHOBTB3|ENST00000504949.1	+	95717632,95731858,95736888,95748332,95752238,95755395	95717765,95732084,95737075,95748487,95752350,95756093	0.936508
cardiac_muscle_cell	chr6	56785861	56785868	56785867	-	High_confidence	6	7	10	0.221553	2.725481	chr6	56779724	56785868	LINE|L1|L1PA3	-	chr6	56670674	56785879	DST|ENST00000522538.5	-	56670674,56699652,56701887,56704279,56735227,56785770	56670807,56699745,56701965,56704369,56735289,56785879	0.700000
cardiac_muscle_cell	chr15	53540743	53540797	53540743	-	High_confidence	97	103	214	4.741231	5.637060	chr15	53540633	53546677	LINE|L1|L1PA2	+	chr15	53513740	53540852	WDR72|NR_102336.1	-	53513740,53523217,53540661	53517754,53523322,53540852	0.934579
cardiac_muscle_cell	chr15	73457374	73457420	73457419	+	RAMPAGE_only	14	15	57	1.262851	4.489804	chr15	73456969	73457767	LINE|L1|L1MEc	-	chr15	73443163	73560010	REC114|ENST00000560581.1	+	73443163,73473831,73550937,73556301,73559751	73443344,73473921,73551150,73556391,73560010	0.912281
cardiac_muscle_cell	chr8	39685045	39685046	39685045	+	High_confidence	12	14	18	0.398795	3.572469	chr8	39684703	39685147	LTR|ERV1|LTR2	+	chr8	39685129	39730062	ADAM18|ENST00000523755.5	+	39685129,39692599,39706789,39723747,39729897	39685412,39692680,39706904,39723907,39730062	0.944444
cardiac_muscle_cell	chr17	50271485	50271488	50271485	+	High_confidence	219	220	392	8.684873	5.980945	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	0.997449
cardiac_muscle_cell	chr3	130179566	130179571	130179566	+	RAMPAGE_only	2	2	7	0.155087	2.521641	chr3	130177549	130180359	LTR|ERV1|HERVS71-int	-	chr3	130212819	130273806	COL6A4P2|NR_027898.1	+	130212819,130214215,130215671,130218268,130221376,130221788,130228015,130228186,130233445,130234586,130235159,130237518,130244290,130244430,130245772,130248385,130248616,130250716,130250817,130260912,130263799,130266269,130267013	130212894,130214242,130215713,130218322,130221439,130221854,130228069,130228222,130233508,130234649,130235222,130237569,130244326,130244493,130245835,130248422,130248751,130250728,130251309,130261003,130264484,130266366,130273806	0.714286
cardiac_muscle_cell	chr11	121236800	121236801	121236800	+	High_confidence	217	226	232	5.140027	5.781167	chr11	121236523	121236926	LTR|ERVK|LTR14B	+	chr11	121236804	121237449	MSTRG.7143.1	+	121236804	121237449	0.883621
cardiac_muscle_cell	chr11	85773435	85773453	85773452	-	RAMPAGE_only	4	4	9	0.199398	2.500000	chr11	85773277	85773644	LINE|L2|L2c	+	chr11	85694220	85758069	SYTL2|NM_001162951.2	-	85694220,85696182,85697978,85700514,85704857,85707428,85709330,85711112,85714412,85718789,85720857,85727895,85733938,85736500,85737574,85745636,85748271,85757624	85695340,85696388,85698078,85700593,85705028,85707531,85709500,85711232,85714507,85718843,85720959,85727967,85734742,85736612,85737656,85745772,85748423,85758069	0.555556
cardiac_muscle_cell	chr10	35140950	35140972	35140971	+	RAMPAGE_only	5	8	27	0.598193	4.323856	chr10	35140967	35141107	SINE|MIR|MIRb	+	chr10	35137835	35212957	CREM|ENST00000439705.5	+	35137835,35148367,35178888,35179133,35201450,35206894,35211253	35137879,35148491,35178986,35179276,35201486,35207051,35212957	0.777778
cardiac_muscle_cell	chr2	185425017	185425112	185425075	+	High_confidence	153	160	911	20.183467	7.621617	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185424939	185732635	MSTRG.21571.2	+	185424939,185434096,185729348,185731723	185425507,185434191,185729419,185732635	0.522503
cardiac_muscle_cell	chr1	45522798	45522859	45522858	-	High_confidence	30	30	74	1.639491	5.492973	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.986486
cardiac_muscle_cell	chrX	136222422	136222445	136222422	-	RAMPAGE_only	3	3	12	0.265863	2.845351	chrX	136222161	136222377	SINE|MIR|MIR	-	chrX	136216813	136220813	MAP7D3|ENST00000471510.1	-	136216813,136219397,136219592,136220764	136217258,136219495,136219671,136220813	0.916667
cardiac_muscle_cell	chr2	169840458	169840478	169840458	+	RAMPAGE_only	17	18	40	0.886211	4.196439	chr2	169840412	169841348	LTR|ERVL-MaLR|MLT1A1-int	-	chr2	169827507	170084131	UBR3|NM_172070.3	+	169827507,169872235,169875790,169877493,169878524,169891164,169895180,169896506,169905113,169906030,169914059,169923928,169924083,169925618,169926691,169926837,169927319,169928726,169932911,169942492,169946287,169947541,169949604,169958437,169986644,169994322,170001303,170006989,170008803,170015280,170029345,170040881,170055459,170061078,170061317,170073427,170079813,170080544,170081725	169828052,169872375,169875949,169877637,169878574,169891231,169895311,169896735,169905293,169906164,169914146,169923994,169924173,169925747,169926744,169926971,169927405,169928868,169933008,169942634,169946392,169947715,169950065,169958526,169986794,169994456,170001414,170007190,170008940,170015366,170029448,170040985,170055584,170061186,170061443,170073607,170080023,170080684,170084131	0.825000
cardiac_muscle_cell	chr7	134548940	134548946	134548940	+	High_confidence	34	34	50	1.107764	4.647585	chr7	134548478	134549049	LTR|ERV1|LTR6A	+	chr7	134549096	134579840	AKR1B15|NM_001080538.2	+	134549096,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579840	0.780000
cardiac_muscle_cell	chr6	26125806	26125814	26125813	-	High_confidence	5	6	12	0.265863	3.095795	chr6	26125749	26126038	SINE|Alu|AluSq	-	chr6	26114872	26126195	MSTRG.30517.1	-	26114872,26123514,26125476	26115135,26124584,26126195	0.833333
cardiac_muscle_cell	chr5	150778538	150778556	150778538	+	High_confidence	4	4	8	0.177242	2.807355	chr5	150778483	150778644	SINE|MIR|MIR3	-	chr5	150778804	150796734	SMIM3|ENST00000648745.1	+	150778804,150782473,150795429	150778972,150782590,150796734	0.750000
cardiac_muscle_cell	chr3	14225463	14225538	14225516	+	High_confidence	133	137	367	8.130990	4.736771	chr3	14225513	14226223	LTR|ERVK|HERVK3-int	+	chr3	14225377	14230528	MSTRG.24570.1	+	14225377,14229704	14225626,14230528	0.863760
cardiac_muscle_cell	chr4	103140835	103140847	103140835	-	RAMPAGE_only	2	2	9	0.199398	2.500000	chr4	103140692	103140796	LINE|L1|L1MC	-	chr4	103105812	103198408	CENPE|ENST00000380026.7	-	103105812,103108802,103110827,103114454,103116576,103120147,103122870,103132692,103133694,103136140,103138350,103140255,103140813,103141749,103143247,103144330,103145049,103145522,103145828,103147355,103148843,103149117,103151218,103153046,103158299,103158613,103159009,103160624,103161085,103161334,103163136,103174735,103175959,103176898,103180310,103181336,103182761,103183200,103185809,103194228,103194373,103194602,103195113,103195919,103196162,103196758,103198263	103106316,103109089,103111011,103114552,103116689,103120333,103123089,103132896,103133892,103136359,103138452,103140414,103141104,103141908,103143406,103144618,103145334,103145681,103146107,103147646,103148999,103149408,103151377,103153250,103158458,103158886,103159324,103160779,103161251,103161457,103163256,103174903,103176048,103177046,103180469,103181456,103182891,103183288,103185861,103194294,103194441,103194684,103195233,103196038,103196252,103196850,103198408	0.888889
cardiac_muscle_cell	chr1	167993401	167993428	167993421	+	RAMPAGE_only	3	3	12	0.265863	2.855389	chr1	167993467	167993755	SINE|Alu|AluSp	+	chr1	167936817	168075834	DCAF6|ENST00000367840.3	+	167936817,167951799,167966628,167974829,167987494,167991203,167993225,168002481,168003869,168004532,168015780,168022987,168038370,168043024,168044584,168044899,168050891,168063620,168065589,168066376,168068357,168075370	167937008,167951861,167966721,167975015,167987608,167991339,167993440,168002575,168003989,168004793,168015951,168023047,168038488,168043140,168044671,168045227,168050933,168063759,168065746,168066465,168068463,168075834	0.916667
cardiac_muscle_cell	chr3	126748971	126749000	126748976	+	RAMPAGE_only	7	7	35	0.775435	4.536670	chr3	126748776	126749205	LINE|L2|L2b	-	chr3	126750919	126960406	MSTRG.25803.6	+	126750919,126852646,126914679,126957415,126960195	126751077,126852730,126914750,126957551,126960406	0.942857
cardiac_muscle_cell	chr2	71423195	71423226	71423195	+	RAMPAGE_only	8	8	34	0.753280	4.337175	chr2	71423244	71423287	DNA|hAT-Ac|OldhAT1	+	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	1.000000
cardiac_muscle_cell	chr11	38424669	38424682	38424681	+	High_confidence	9	9	20	0.443106	3.646439	chr11	38424586	38425121	LTR|ERVL|MLT2B3	+	chr11	38424801	38433365	MSTRG.5847.1	+	38424801,38429947	38425041,38433365	0.800000
cardiac_muscle_cell	chr4	106317832	106317852	106317832	+	RAMPAGE_only	2	2	6	0.132932	2.584963	chr4	106317692	106317877	SINE|MIR|MIRb	+	chr4	106316506	106349220	MSTRG.27619.4	+	106316506,106324984,106327450,106328075,106331671,106336868,106347525	106321451,106325118,106327564,106328243,106331883,106337037,106349220	1.000000
cardiac_muscle_cell	chr12	53464833	53464837	53464833	+	RAMPAGE_only	4	5	12	0.265863	3.084963	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.833333
cardiac_muscle_cell	chr5	70077177	70077191	70077190	+	RAMPAGE_only	4	4	10	0.221553	2.521928	chr5	70076974	70077573	LINE|L1|L1MC5a	+	chr5	70049663	70077592	SMN2|ENST00000380742.8	+	70049663,70063414,70065964,70066933,70067293,70070640,70076520,70077018	70049766,70063486,70066084,70067134,70067446,70070751,70076574,70077592	0.600000
cardiac_muscle_cell	chr21	33931219	33931235	33931224	+	High_confidence	19	21	49	1.085609	4.420234	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.551020
cardiac_muscle_cell	chr1	15526456	15526491	15526456	-	High_confidence	3	3	10	0.221553	2.846439	chr1	15526347	15526477	SINE|MIR|MIR3	+	chr1	15518135	15526534	CASP9|ENST00000469637.1	-	15518135,15519880,15526190	15518395,15520001,15526534	0.900000
cardiac_muscle_cell	chr7	103888825	103888836	103888825	-	RAMPAGE_only	5	5	14	0.310174	3.378783	chr7	103888723	103888803	DNA|hAT-Tip100|MER91A	-	chr7	103471783	103989516	RELN|ENST00000428762.5	-	103471783,103478388,103482872,103483652,103486196,103489741,103490667,103491952,103495722,103496525,103497819,103498076,103500744,103503015,103510850,103515184,103519322,103522021,103523390,103535315,103539077,103540196,103542730,103545123,103551066,103553460,103553659,103556976,103557964,103561531,103561812,103565277,103566223,103566600,103572183,103574091,103575547,103589595,103593681,103594320,103596455,103603303,103604345,103610694,103611610,103629939,103635424,103636234,103640542,103650273,103651660,103652550,103654092,103661375,103682115,103697852,103700909,103723139,103728110,103749425,103753181,103776556,103833536,103917074,103989130	103472908,103478394,103482971,103483850,103486416,103489899,103490829,103492026,103495898,103496768,103497926,103498252,103500922,103503230,103511005,103515441,103519516,103522199,103523531,103535484,103539327,103540455,103542878,103545344,103551296,103553563,103553831,103557159,103558049,103561709,103561953,103565551,103566412,103566759,103572260,103574299,103575705,103589828,103593882,103594492,103596661,103603490,103604483,103610807,103611803,103630176,103635586,103636468,103640609,103650383,103651789,103652759,103654205,103661527,103682261,103698093,103701006,103723191,103728207,103749504,103753214,103776627,103833672,103917185,103989516	0.857143
cardiac_muscle_cell	chr10	103395892	103395914	103395913	-	High_confidence	2	2	6	0.132932	2.584963	chr10	103395615	103395992	LINE|RTE-X|L4_C_Mam	+	chr10	103389049	103396074	ATP5MD|ENST00000369811.5	-	103389049,103392190,103392370,103395745	103389166,103392283,103392466,103396074	0.666667
cardiac_muscle_cell	chr2	210432528	210432597	210432528	-	RAMPAGE_only	5	5	32	0.708969	3.186176	chr2	210432360	210432487	DNA|PiggyBac|MER85	-	chr2	210431248	210476705	LANCL1|NM_001136574.1	-	210431248,210435386,210436215,210437689,210440597,210441307,210455106,210471958,210476315,210476646	210434563,210435459,210436392,210437872,210440744,210441443,210455314,210472076,210476412,210476705	0.968750
cardiac_muscle_cell	chr2	178830615	178830736	178830681	-	RAMPAGE_only	4	7	52	1.152075	4.499828	chr2	178830536	178830986	LINE|L2|L2c	-	chr2	178830268	178837137	CCDC141|ENST00000472828.1	-	178830268,178836893	178830795,178837137	0.730769
cardiac_muscle_cell	chr15	41365763	41365769	41365768	+	High_confidence	7	7	18	0.398795	2.910992	chr15	41365708	41366019	SINE|Alu|AluSc8	-	chr15	41365746	41377288	NUSAP1|ENST00000560318.1	+	41365746,41371526,41375711,41377195	41365863,41371684,41375828,41377288	0.666667
cardiac_muscle_cell	chr5	78642123	78642150	78642123	-	RAMPAGE_only	11	13	31	0.686814	4.513153	chr5	78641943	78642313	LTR|ERVL-MaLR|MLT1A	-	chr5	78485214	78648825	LHFPL2|NM_005779.2	-	78485214,78509783,78564812,78632263,78648498	78489153,78510398,78564871,78632368,78648825	0.548387
cardiac_muscle_cell	chr1	41186185	41186208	41186194	-	RAMPAGE_only	3	3	16	0.354485	3.323231	chr1	41186124	41186319	SINE|MIR|MIR1_Amn	+	chr1	41027198	41163017	SCMH1|NM_001172221.1	-	41027198,41028583,41033982,41037361,41046406,41048689,41070594,41075218,41113282,41116921,41142877,41151613,41160874,41161363,41162778	41028319,41028726,41034048,41037541,41046598,41048890,41070721,41075451,41113526,41117010,41143112,41151684,41160898,41161432,41163017	0.500000
cardiac_muscle_cell	chr11	307580	307581	307580	-	RAMPAGE_only	17	17	17	0.376640	3.807764	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	0.529412
cardiac_muscle_cell	chr8	107362982	107363040	107363039	-	High_confidence	72	75	431	9.548929	6.350624	chr8	107363039	107363288	SINE|MIR|MIRc	+	chr8	107251526	107362996	MSTRG.35375.5	-	107251526,107264220,107284681,107293935,107303239,107321895,107336149,107346941,107362860	107252015,107264351,107284848,107294037,107303367,107322128,107336271,107347097,107362996	0.953596
cardiac_muscle_cell	chr3	141429526	141429539	141429538	+	RAMPAGE_only	8	10	14	0.310174	3.392747	chr3	141429492	141430039	LINE|L2|L2a	-	chr3	141426126	141443020	ZBTB38|ENST00000510726.1	+	141426126,141427633,141442388	141426165,141427821,141443020	0.571429
cardiac_muscle_cell	chr7	101217578	101217595	101217578	-	High_confidence	23	23	75	1.661647	5.398956	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.960000
cardiac_muscle_cell	chr5	81616575	81616590	81616579	-	High_confidence	8	8	19	0.420950	3.683542	chr5	81616090	81622140	LINE|L1|L1HS	+	chr5	81442650	81616473	SSBP2|ENST00000509743.6	-	81442650,81446867,81448789,81461054,81466973,81473699,81474495,81489249,81513627,81615472,81616348	81442723,81446922,81448825,81461103,81467041,81473770,81474562,81489309,81513717,81615557,81616473	0.684211
cardiac_muscle_cell	chr4	79013881	79013933	79013932	+	RAMPAGE_only	8	8	41	0.908367	4.784184	chr4	79013849	79013996	SINE|5S-Deu-L2|AmnSINE1	-	chr4	78971747	79308799	LINC01088|NR_038342.1	+	78971747,78972999,79086095,79195835,79306690,79308272	78971876,78973052,79086262,79195932,79306728,79308799	0.658537
cardiac_muscle_cell	chr14	80927095	80927147	80927118	-	RAMPAGE_only	17	18	67	1.484404	4.924452	chr14	80925611	80928702	LINE|L1|L1PB3	+	chr14	80496473	80939540	CEP128|ENST00000281129.7	-	80496473,80504911,80526868,80530808,80559278,80580373,80743074,80756891,80761436,80777881,80784894,80792759,80831142,80836204,80838203,80840681,80862756,80895717,80899937,80904812,80905954,80914321,80916400,80939384	80497582,80505020,80526982,80530886,80559302,80580423,80743267,80756951,80761613,80778046,80785545,80793110,80831294,80836337,80838278,80840768,80862873,80895790,80900029,80904931,80906081,80914408,80916562,80939540	0.910448
cardiac_muscle_cell	chr4	118835953	118835954	118835953	-	High_confidence	26	26	28	0.620348	3.796218	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.928571
cardiac_muscle_cell	chr4	75127364	75127365	75127364	-	RAMPAGE_only	12	13	18	0.398795	3.219528	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.944444
cardiac_muscle_cell	chr1	153967460	153967512	153967486	+	High_confidence	70	80	227	5.029250	6.045306	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.559471
cardiac_muscle_cell	chr16	72627719	72627775	72627765	-	RAMPAGE_only	64	65	311	6.890294	6.977286	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.614148
cardiac_muscle_cell	chr1	217696027	217696037	217696027	+	RAMPAGE_only	6	6	10	0.221553	2.921928	chr1	217690492	217696523	LINE|L1|L1PA2	-	chr1	217737843	217801768	SPATA17|ENST00000492747.2	+	217737843,217739472,217741974,217774333,217782173,217801717	217737967,217739589,217742098,217774537,217782322,217801768	1.000000
cardiac_muscle_cell	chr12	46266534	46266555	46266554	-	High_confidence	4	4	12	0.265863	2.913977	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.916667
cardiac_muscle_cell	chr15	65300634	65300635	65300634	-	High_confidence	61	63	66	1.462249	4.579089	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65266576	65300618	PARP16|ENST00000558873.1	-	65266576,65270934,65282546,65300196	65266768,65271072,65282632,65300618	0.772727
cardiac_muscle_cell	chr13	33818364	33818375	33818364	+	High_confidence	5	5	12	0.265863	3.095795	chr13	33818361	33818761	LINE|L2|L2a	-	chr13	33818068	33837507	RFC3|NM_002915.3	+	33818068,33821131,33823916,33825788,33829835,33830718,33831255,33835147,33836103	33818265,33821269,33823984,33825886,33830017,33830855,33831354,33835217,33837507	0.750000
cardiac_muscle_cell	chr5	109383499	109383509	109383499	-	High_confidence	4	4	14	0.310174	3.180833	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.857143
cardiac_muscle_cell	chr17	50737440	50737469	50737461	+	RAMPAGE_only	3	3	11	0.243708	3.095795	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50744660	50750847	LUC7L3|ENST00000504065.5	+	50744660,50745719,50746541,50749218,50750500	50744813,50746003,50746702,50749344,50750847	0.636364
cardiac_muscle_cell	chr1	39310285	39310317	39310285	+	RAMPAGE_only	2	2	13	0.288019	3.085055	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	1.000000
cardiac_muscle_cell	chr7	15547679	15547703	15547679	-	RAMPAGE_only	5	5	21	0.465261	3.820889	chr7	15547309	15553333	LINE|L1|L1PA2	+	chr7	15200317	15562015	AGMO|NM_001004320.1	-	15200317,15365513,15366139,15385445,15387405,15390670,15390839,15394112,15418557,15431004,15544771,15560140,15561719	15201359,15365619,15366222,15385562,15387540,15390750,15390905,15394179,15418653,15431108,15544923,15560271,15562015	0.857143
cardiac_muscle_cell	chr12	12110981	12110986	12110981	+	High_confidence	40	47	64	1.417938	4.692988	chr12	12110866	12110982	SINE|Alu|AluJb	+	chr12	12111162	12111489	AC007537.1|ENST00000539347.1	+	12111162	12111489	0.796875
cardiac_muscle_cell	chr7	33554843	33554883	33554882	+	RAMPAGE_only	18	18	76	1.683802	5.376603	chr7	33553757	33554962	LINE|L2|L2a	-	chr7	33344606	33605626	BBS9|ENST00000434373.3	+	33344606,33349067,33351218,33352858,33357854,33367766,33383665,33387991,33505462,33533953,33604864	33344634,33349170,33351323,33352873,33357995,33367862,33383838,33388144,33505645,33534176,33605626	0.881579
cardiac_muscle_cell	chr13	20140135	20140136	20140135	-	RAMPAGE_only	10	10	14	0.310174	2.873141	chr13	20140031	20140160	DNA|hAT-Charlie|MER105	+	chr13	20138254	20161044	GJA3|NM_021954.3	-	20138254,20160889	20143305,20161044	0.928571
cardiac_muscle_cell	chr12	8320329	8320378	8320361	+	High_confidence	5	5	28	0.620348	4.606739	chr12	8318355	8321168	LTR|ERV1|HERVS71-int	-	chr12	8320380	8369555	AC092745.2|ENST00000537764.1	+	8320380,8368981	8320426,8369555	0.750000
cardiac_muscle_cell	chr9	132319462	132319476	132319468	-	RAMPAGE_only	19	21	75	1.661647	5.535476	chr9	132319064	132319644	LINE|L2|L2a	+	chr9	132261355	132311856	SETX|ENST00000436441.5	-	132261355,132269402,132269614,132271709,132275255,132277059,132278069,132281466,132283263,132286422,132288235,132288549,132295871,132296886,132298079,132300629,132311756	132264985,132269489,132269702,132271808,132275420,132277152,132278257,132281574,132283413,132286494,132288351,132288651,132296028,132297054,132298312,132300803,132311856	0.720000
cardiac_muscle_cell	chr20	46684480	46684488	46684487	-	High_confidence	8	8	14	0.310174	2.842371	chr20	46684315	46684677	LTR|ERVL-MaLR|THE1C	-	chr20	46557822	46684485	SLC13A3|NM_001193340.1	-	46557822,46563413,46566228,46575572,46583571,46589159,46592403,46596156,46599970,46610445,46613459,46670042,46684395	46560198,46563551,46566390,46575685,46583669,46589255,46592529,46596342,46600037,46610609,46613725,46670139,46684485	0.571429
cardiac_muscle_cell	chr6	114011310	114011311	114011310	-	High_confidence	26	26	31	0.686814	4.004364	chr6	114011169	114011436	LTR|ERV1|MER51B	-	chr6	113956628	114011308	HDAC2|ENST00000522371.5	-	113956628,113958648,113959905,113962366,114011130	113956693,113958766,113960018,113962394,114011308	0.645161
cardiac_muscle_cell	chr11	111097319	111097329	111097319	-	High_confidence	3	3	7	0.155087	2.807355	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	1.000000
cardiac_muscle_cell	chr21	28089888	28090340	28090339	+	High_confidence	115	130	1519	33.653881	4.903834	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.938117
cardiac_muscle_cell	chr10	119038237	119038400	119038237	-	RAMPAGE_only	9	9	120	2.658634	5.983160	chr10	119037907	119038207	SINE|Alu|AluSq2	-	chr10	119033669	119080804	EIF3A|ENST00000369144.7	-	119033669,119037118,119038237,119041993,119044053,119049800,119050520,119051198,119056739,119056935,119057955,119059211,119059601,119060745,119061223,119065398,119069445,119070885,119072889,119073440,119073746,119080627	119036268,119037309,119038439,119042772,119044142,119049985,119050674,119051321,119056853,119057040,119058303,119059397,119059718,119060844,119061328,119065570,119069654,119071085,119073053,119073577,119073937,119080804	0.983333
cardiac_muscle_cell	chr9	128185577	128185578	128185577	-	RAMPAGE_only	17	17	17	0.376640	3.690117	chr9	128185400	128185541	SINE|MIR|MIR3	-	chr9	128166151	128190710	CIZ1|ENST00000415526.5	-	128166151,128166758,128167094,128169051,128169405,128170019,128176350,128177565,128178368,128178708,128180414,128180720,128185546,128190328,128190687	128166406,128166880,128167164,128169201,128169519,128170107,128176475,128177763,128178490,128179415,128180523,128180799,128185776,128190444,128190710	1.000000
cardiac_muscle_cell	chr7	134432378	134432453	134432378	-	High_confidence	23	23	124	2.747256	4.902890	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.572581
cardiac_muscle_cell	chr2	179054971	179054982	179054981	+	High_confidence	487	618	959	21.246920	7.254270	chr2	179054073	179056929	LTR|ERV1|HERVH-int	-	chr2	179054805	179058325	MSTRG.21530.1	+	179054805,179056428	179056407,179058325	0.779979
cardiac_muscle_cell	chr3	157089677	157089701	157089677	+	High_confidence	5	5	13	0.288019	3.026987	chr3	157089613	157089857	SINE|MIR|MIRb	+	chr3	157089880	157101135	LINC00881|NR_034008.1	+	157089880,157099482,157100685	157090122,157099581,157101135	1.000000
cardiac_muscle_cell	chr22	50757120	50757248	50757247	+	High_confidence	18	19	150	3.323293	6.177836	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.580000
cardiac_muscle_cell	chr18	58953780	58953794	58953793	+	High_confidence	5	5	11	0.243708	2.594907	chr18	58953830	58953961	SINE|MIR|MIRc	+	chr18	58953183	58984799	ZNF532|ENST00000592249.5	+	58953183,58953517,58979054,58981469,58983971	58953282,58953799,58979167,58981617,58984799	1.000000
cardiac_muscle_cell	chr3	9986881	9986916	9986898	+	High_confidence	22	22	107	2.370616	5.934157	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.560748
cardiac_muscle_cell	chr5	108380033	108380044	108380033	-	RAMPAGE_only	5	5	9	0.199398	2.503258	chr5	108379933	108380070	SINE|MIR|MIRb	+	chr5	107859052	108381109	FBXL17|ENST00000619412.4	-	107859052,107881036,108020924,108186116,108224120,108348398,108364737,108367830,108380698,108381055	107861860,107881179,108021001,108186247,108224228,108348530,108364995,108367953,108380923,108381109	0.888889
cardiac_muscle_cell	chrX	129493040	129493058	129493040	-	RAMPAGE_only	6	6	16	0.354485	3.125000	chrX	129492703	129493323	LINE|L1|L1ME4a	+	chrX	129446845	129523405	SMARCA1|ENST00000371121.4	-	129446845,129448332,129465519,129465843,129468772,129471203,129480700,129481074,129487017,129488936,129490059,129491940,129493039,129496749,129497844,129499731,129504733,129506079,129507940,129511803,129515686,129515893,129516330,129518360,129523196	129447233,129448443,129465732,129465962,129468905,129471326,129480814,129481185,129487137,129489085,129490192,129492093,129493075,129496871,129498071,129499841,129504802,129506211,129508096,129511983,129515787,129515994,129516497,129518447,129523405	0.937500
cardiac_muscle_cell	chr1	238486024	238486036	238486024	-	High_confidence	2	2	7	0.155087	2.521641	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480440	238486023	LINC01139|ENST00000649681.1	-	238480440	238486023	1.000000
cardiac_muscle_cell	chr16	61918794	61918795	61918794	-	High_confidence	11	11	12	0.265863	2.845351	chr16	61918303	61919817	LINE|L1|L1HS	+	chr16	61901391	61918714	CDH8|ENST00000577228.1	-	61901391,61918257	61901473,61918714	0.666667
cardiac_muscle_cell	chr2	178828001	178828023	178828001	-	RAMPAGE_only	3	3	16	0.354485	3.577820	chr2	178827770	178828123	LTR|ERVL-MaLR|MLT1C	-	chr2	178527011	179050059	MSTRG.21674.12	-	178527011,178527445,178528273,178528527,178529959,178530240,178535981,178536937,178537341,178538539,178538945,178539381,178540067,178541281,178542263,178542661,178543068,178543833,178544200,178545387,178545819,178546211,178546599,178547002,178547406,178549569,178549985,178550966,178551629,178553501,178553913,178554452,178554864,178556847,178557252,178557647,178558340,178559310,178576528,178576922,178577601,178577987,178578610,178578805,178579560,178579938,178580321,178581498,178581905,178582295,178582939,178583606,178584275,178584668,178585071,178586504,178587117,178587515,178587898,178588537,178591598,178591977,178592378,178592774,178593172,178593567,178593960,178594343,178595506,178597537,178597907,178598505,178598747,178599145,178599553,178600853,178601264,178601657,178601881,178602001,178602281,178603875,178604707,178604986,178605413,178607020,178607400,178607784,178608177,178608605,178609207,178609683,178610089,178610992,178611371,178611757,178612056,178612276,178612772,178613160,178613750,178614051,178614465,178614846,178615306,178615640,178616478,178616728,178617119,178617324,178617778,178618188,178618583,178619620,178619987,178620216,178620714,178621101,178621474,178621839,178622669,178624464,178625272,178629300,178630240,178630803,178631033,178632146,178632525,178632917,178633186,178633412,178633816,178634365,178634722,178635164,178635439,178635962,178636397,178637368,178639698,178640047,178640540,178641240,178642236,178644547,178645919,178649816,178650163,178650750,178651242,178651452,178651665,178651883,178652095,178652263,178652457,178659004,178659171,178662965,178670217,178671089,178671970,178672406,178672634,178673632,178674313,178675038,178675920,178677620,178678124,178678413,178678746,178679338,178679598,178679893,178680253,178681078,178681375,178681660,178682696,178683210,178683998,178684329,178684665,178684905,178685252,178685517,178688110,178688676,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453,178704146,178704509,178704876,178705173,178706453,178706861,178707525,178709565,178710634,178711061,178711943,178712314,178712696,178713084,178713896,178714291,178714985,178715492,178717094,178717522,178717942,178718321,178718694,178719163,178719553,178719982,178720384,178720920,178721846,178722258,178722658,178723045,178723417,178723855,178724259,178725367,178725767,178727089,178727584,178728109,178728499,178728890,178729287,178729663,178730092,178730504,178730924,178731304,178731692,178732065,178732439,178732833,178733238,178733613,178734327,178734706,178735510,178738081,178739140,178753123,178758983,178764176,178764526,178766380,178767758,178768013,178768672,178769678,178770059,178770411,178771210,178773108,178773461,178773837,178774206,178774920,178775355,178777148,178777419,178777703,178778873,178779228,178779999,178781120,178782211,178782538,178782805,178783719,178784069,178785619,178785847,178789359,178789977,178790707,178792071,178793403,178794398,178794921,178799486,178799824,178800394,178802137,178804551,178817525,178825312,178836893,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900,178886751,178888526,178905328,178918712,178944534,178961229,178975056,178978483,179047283,179049839	178527307,178527748,178528427,178529219,178530116,178535849,178536575,178537243,178537917,178538839,178539251,178539966,178540370,178541584,178542563,178542949,178543662,178544115,178544506,178545693,178546116,178546502,178546905,178547305,178549473,178549869,178550273,178551260,178553396,178553807,178554216,178554752,178555152,178557144,178557555,178558235,178558637,178576416,178576831,178577510,178577898,178578185,178578715,178579393,178579848,178580229,178580609,178581804,178582208,178582592,178583227,178583906,178584578,178584968,178585347,178586807,178587417,178587800,178588219,178591504,178591892,178592277,178592660,178593083,178593475,178593867,178594242,178594646,178595809,178597819,178598058,178598654,178599062,178599445,178599850,178601171,178601564,178601787,178601914,178602150,178602590,178604305,178604898,178605295,178605713,178607314,178607685,178608081,178608477,178608908,178609570,178609986,178610389,178611271,178611677,178611954,178612162,178612576,178613072,178613276,178613937,178614348,178614753,178614968,178615484,178615788,178616630,178617013,178617234,178617512,178618081,178618491,178618853,178619887,178620112,178620625,178620993,178621368,178621741,178622008,178622767,178624731,178625396,178629443,178630367,178630943,178631300,178632413,178632792,178633044,178633326,178633676,178634083,178634629,178634849,178635304,178635715,178636241,178636799,178637419,178639788,178640110,178640630,178641315,178642317,178644616,178646030,178649894,178650271,178650834,178651320,178651536,178651749,178651967,178652179,178652347,178652541,178659088,178659255,178663055,178670295,178671170,178672267,178672481,178672703,178673710,178674409,178675113,178675995,178677917,178678208,178678497,178678830,178679416,178679682,178680055,178680331,178681171,178681450,178681738,178682903,178683291,178684082,178684413,178684749,178684989,178685330,178685598,178688224,178688778,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702663,178704407,178704777,178704966,178705357,178706739,178706954,178707813,178709856,178710922,178711349,178712222,178712593,178712975,178713372,178714175,178714573,178715264,178715774,178717382,178717810,178718221,178718600,178718973,178719451,178719832,178720264,178720663,178721202,178722134,178722546,178722937,178723324,178723696,178724143,178724538,178725649,178726046,178727371,178727863,178728397,178728778,178729169,178729566,178729945,178730371,178730792,178731203,178731583,178731971,178732347,178732718,178733121,178733517,178733892,178734606,178734988,178736074,178738360,178741921,178753180,178759172,178764302,178764811,178766612,178767924,178768155,178768933,178769939,178770320,178770675,178771471,178773369,178773725,178774110,178774473,178775202,178777049,178777317,178777584,178777975,178779118,178779462,178780205,178781263,178782427,178782602,178783064,178783785,178784351,178785742,178786141,178789497,178790115,178790845,178792197,178793541,178794551,178795252,178799731,178799910,178800682,178802341,178804655,178817680,178834440,178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178885092,178886871,178888668,178905501,178918907,178944651,178961483,178975165,178978675,179047406,179050059	1.000000
cardiac_muscle_cell	chr6	3195772	3195779	3195772	-	High_confidence	21	21	36	0.797590	4.650572	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.972222
cardiac_muscle_cell	chr2	70257706	70257735	70257717	+	High_confidence	3	3	10	0.221553	2.503258	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.900000
cardiac_muscle_cell	chr5	128896929	128897006	128896929	+	RAMPAGE_only	31	35	117	2.592169	6.088290	chr5	128892904	128897248	LINE|L1|L1MA2	-	chr5	128965126	129033642	SLC27A6|NM_001317984.1	+	128965126,128965873,128985132,128988599,128990339,129015884,129023619,129027132,129028344,129029576,129033105	128965697,128966618,128985336,128988758,128990464,129016079,129023710,129027331,129028442,129029707,129033642	0.632479
cardiac_muscle_cell	chr2	182030581	182030608	182030581	+	RAMPAGE_only	3	3	15	0.332329	2.835238	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	181986021	182129538	PPP1R1C|ENST00000409702.1	+	181986021,181987838,182061441,182063730,182117206,182128973	181986191,181987899,182061479,182063791,182117468,182129538	0.800000
cardiac_muscle_cell	chr3	25737366	25737368	25737366	-	RAMPAGE_only	6	8	10	0.221553	2.725481	chr3	25737106	25737338	SINE|MIR|MIRb	-	chr3	25719278	25736346	NGLY1|ENST00000496726.5	-	25719278,25720013,25729132,25733871	25719635,25720191,25729318,25736346	0.800000
cardiac_muscle_cell	chr20	25296861	25296916	25296894	+	RAMPAGE_only	5	5	18	0.398795	3.419382	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	1.000000
cardiac_muscle_cell	chr2	178799195	178799403	178799292	-	RAMPAGE_only	8	8	127	2.813721	5.520814	chr2	178799289	178799435	LTR|ERV1|LTR1A2	+	chr2	178798494	178807408	TTN|ENST00000470257.1	-	178798494,178799824,178800394,178802137,178804551,178807211	178799731,178799910,178800682,178802341,178804655,178807408	0.976378
cardiac_muscle_cell	chr12	8696627	8696641	8696640	+	High_confidence	6	6	19	0.420950	3.787144	chr12	8696484	8696683	SINE|MIR|MIR	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.526316
cardiac_muscle_cell	chr19	35899347	35899371	35899370	+	RAMPAGE_only	14	14	27	0.598193	2.999080	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35902479	35904271	HCST|NM_014266.3	+	35902479,35903350,35903771,35904119	35902636,35903416,35903903,35904271	0.925926
cardiac_muscle_cell	chr20	18794077	18794086	18794085	+	High_confidence	85	85	240	5.317269	6.310588	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.991667
cardiac_muscle_cell	chr7	15547747	15547803	15547747	-	RAMPAGE_only	10	10	47	1.041298	3.716705	chr7	15547309	15553333	LINE|L1|L1PA2	+	chr7	15200317	15562015	AGMO|NM_001004320.1	-	15200317,15365513,15366139,15385445,15387405,15390670,15390839,15394112,15418557,15431004,15544771,15560140,15561719	15201359,15365619,15366222,15385562,15387540,15390750,15390905,15394179,15418653,15431108,15544923,15560271,15562015	0.872340
cardiac_muscle_cell	chr7	47992160	47992161	47992160	-	RAMPAGE_only	4	4	7	0.155087	2.521641	chr7	47992098	47992580	LINE|L1|HAL1	+	chr7	47987147	47988963	SUN3|ENST00000461953.5	-	47987147,47988787	47987449,47988963	1.000000
cardiac_muscle_cell	chr16	58755976	58755977	58755976	-	RAMPAGE_only	25	25	25	0.553882	4.213661	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
cardiac_muscle_cell	chr15	75198898	75198917	75198907	+	High_confidence	7	12	33	0.731124	3.993731	chr15	75198623	75199037	LTR|ERV1|MER51A	-	chr15	75198891	75212169	C15orf39|ENST00000360639.6	+	75198891,75205998,75210748	75199161,75208824,75212169	0.878788
cardiac_muscle_cell	chr9	38467523	38467541	38467523	+	High_confidence	4	4	9	0.199398	2.750000	chr9	38467291	38467773	LINE|L1|L1ME1	-	chr9	38467566	38504160	MSTRG.36133.4	+	38467566,38469846,38471887,38501969,38503751	38467616,38469965,38471933,38502081,38504160	0.666667
cardiac_muscle_cell	chr16	57484930	57484961	57484930	-	High_confidence	10	12	25	0.553882	3.619471	chr16	57484598	57484990	LINE|L2|L2a	+	chr16	57475558	57484294	DOK4|ENST00000566705.5	-	57475558,57475849,57479441,57483957	57475620,57475957,57479685,57484294	0.960000
cardiac_muscle_cell	chr18	80147915	80147930	80147929	+	High_confidence	5	5	13	0.288019	2.855389	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.615385
cardiac_muscle_cell	chr10	103181328	103181329	103181328	-	RAMPAGE_only	19	19	19	0.420950	4.037401	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.736842
cardiac_muscle_cell	chr9	87041987	87042111	87042110	-	High_confidence	29	30	160	3.544846	6.173923	chr9	87041882	87047900	LINE|L1|L1PA3	+	chr9	87008450	87042126	LOC440173|NR_027471.1	-	87008450,87041870	87010210,87042126	0.787500
cardiac_muscle_cell	chrX	44314281	44314312	44314311	-	RAMPAGE_only	10	12	53	1.174230	5.260847	chrX	44314142	44314275	LINE|L1|L1ME3Cz	-	chrX	44148664	44343672	EFHC2|ENST00000420999.1	-	44148664,44163921,44176291,44178366,44229648,44232480,44235304,44242120,44248271,44248802,44250193,44261074,44272685,44312567,44343546	44148896,44164027,44176384,44178564,44229779,44232677,44235447,44242289,44248410,44248916,44250445,44261298,44272836,44312756,44343672	0.698113
cardiac_muscle_cell	chr3	197299271	197299317	197299316	-	High_confidence	9	9	22	0.487416	3.921928	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.909091
cardiac_muscle_cell	chr8	99893361	99893415	99893414	-	High_confidence	11	12	32	0.708969	3.844414	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.875000
cardiac_muscle_cell	chrX	21947294	21947329	21947328	+	RAMPAGE_only	3	3	9	0.199398	2.947703	chrX	21947305	21947443	DNA|hAT-Charlie|MER5A	+	chrX	21941051	21994473	MSTRG.37458.6	+	21941051,21966982,21967195,21971896,21972506,21977060,21977959,21978876,21984303,21985143,21992596,21994311	21941468,21967045,21967316,21971990,21972571,21977236,21978114,21978966,21984418,21985223,21992712,21994473	1.000000
cardiac_muscle_cell	chr5	117454948	117454965	117454949	+	High_confidence	18	27	45	0.996988	4.831940	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.622222
cardiac_muscle_cell	chr3	120719592	120719616	120719602	-	RAMPAGE_only	4	4	13	0.288019	3.392747	chr3	120719120	120721943	LINE|L1|L1PA4	+	chr3	120689417	120742505	RABL3|ENST00000481015.5	-	120689417,120690448,120694152,120705999,120730695,120742461	120689888,120690487,120694224,120706114,120730787,120742505	0.615385
cardiac_muscle_cell	chr17	82755244	82755247	82755246	+	RAMPAGE_only	22	32	34	0.753280	4.250000	chr17	82754906	82755749	LTR|ERV1|MER4D1	-	chr17	82752157	82942709	TBCD|ENST00000539345.6	+	82752157,82756164,82763964,82766266,82768419,82772451,82781588,82797756,82800863,82805874,82807607,82809707,82814839,82870223,82884144,82889667,82893546,82900650,82903404,82905935,82907760,82909284,82911757,82920555,82921500,82923651,82924938,82926399,82927185,82927904,82929112,82929361,82930521,82932657,82937270,82937845,82938048,82939366,82941398,82942448	82752377,82756215,82764062,82766368,82768566,82772507,82781721,82797802,82800996,82806011,82807668,82809782,82814934,82870380,82884202,82889697,82893632,82900731,82903478,82906053,82907821,82909307,82911789,82920618,82921577,82923733,82925057,82926491,82927323,82927988,82929271,82929500,82930643,82932735,82937360,82937959,82938136,82939476,82941483,82942709	0.911765
cardiac_muscle_cell	chrX	74000371	74000466	74000371	+	RAMPAGE_only	4	5	40	0.886211	3.975177	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.950000
cardiac_muscle_cell	chr2	182928782	182928853	182928801	-	RAMPAGE_only	5	7	33	0.731124	4.392583	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.515152
cardiac_muscle_cell	chr13	43053948	43054008	43053971	+	RAMPAGE_only	150	168	803	17.790696	5.712102	chr13	43052716	43054750	LINE|L1|L1PB1	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.960149
cardiac_muscle_cell	chr1	51403428	51403522	51403428	-	RAMPAGE_only	9	9	76	1.683802	4.136474	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.960526
cardiac_muscle_cell	chr1	41162285	41162307	41162297	-	High_confidence	5	5	18	0.398795	3.499228	chr1	41161918	41163496	LTR|ERV1|MER52D	+	chr1	41027198	41163017	SCMH1|NM_001172221.1	-	41027198,41028583,41033982,41037361,41046406,41048689,41070594,41075218,41113282,41116921,41142877,41151613,41160874,41161363,41162778	41028319,41028726,41034048,41037541,41046598,41048890,41070721,41075451,41113526,41117010,41143112,41151684,41160898,41161432,41163017	0.555556
cardiac_muscle_cell	chr1	147760564	147760609	147760601	-	High_confidence	107	109	196	4.342436	5.445516	chr1	147760317	147760652	LINE|L2|L2c	+	chr1	147756198	147760606	GJA5|ENST00000579774.2	-	147756198,147760498	147759271,147760606	0.979592
cardiac_muscle_cell	chr4	90990541	90990600	90990599	+	RAMPAGE_only	7	8	27	0.598193	4.060262	chr4	90990629	90990739	DNA|hAT-Charlie|MER5A	+	chr4	91085949	91601913	CCSER1|ENST00000649522.1	+	91085949,91283808,91598571	91085994,91283854,91601913	0.740741
cardiac_muscle_cell	chr6	52955040	52955041	52955040	+	RAMPAGE_only	8	8	8	0.177242	2.500000	chr6	52955078	52955376	SINE|Alu|AluSz6	+	chr6	52995619	52995950	RF00100|ENST00000365328.1	+	52995619	52995950	1.000000
cardiac_muscle_cell	chr1	83182658	83182679	83182658	-	High_confidence	7	7	21	0.465261	3.594466	chr1	83182174	83188201	LINE|L1|L1PA2	+	chr1	83019431	83182602	MSTRG.1560.1	-	83019431,83182169	83021428,83182602	0.523810
cardiac_muscle_cell	chr11	65382789	65382790	65382789	-	High_confidence	11	11	15	0.332329	2.753434	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375191	65382674	SLC25A45|NM_001077241.2	-	65375191,65376817,65379375,65379866,65380131,65382485	65376675,65377076,65379561,65379938,65380175,65382674	0.533333
cardiac_muscle_cell	chr21	44485567	44485568	44485567	+	High_confidence	30	39	44	0.974833	4.833014	chr21	44485339	44486157	LTR|ERV1|LTR1A2	+	chr21	44485576	44490288	LINC02575|ENST00000449713.1	+	44485576,44490030	44486230,44490288	0.818182
cardiac_muscle_cell	chr1	49257817	49257829	49257817	-	RAMPAGE_only	4	4	14	0.310174	3.392747	chr1	49257178	49257818	LINE|L1|L1PA3	-	chr1	48817506	50023900	AGBL4|ENST00000371836.1	-	48817506,48867190,49045583,49245769,49697312,49851395,50023762	48818222,48867230,49045800,49245864,49697437,49851518,50023900	0.714286
cardiac_muscle_cell	chr13	56735607	56735632	56735621	-	High_confidence	145	198	840	18.610441	6.736054	chr13	56735426	56736646	LTR|ERV1|LTR12C	+	chr13	56276085	56735681	MSTRG.9850.1	-	56276085,56291311,56335536,56616245,56735396	56276261,56291403,56335593,56616376,56735681	0.503571
cardiac_muscle_cell	chr18	28159296	28159297	28159296	-	High_confidence	15	16	16	0.354485	2.789898	chr18	28159142	28159517	LTR|ERVL|LTR79	+	chr18	28011917	28159297	CDH2|ENST00000413878.1	-	28011917,28013682,28147672,28159148	28011992,28013909,28147784,28159297	0.750000
cardiac_muscle_cell	chr6	122444187	122444455	122444285	-	RAMPAGE_only	12	13	198	4.386747	5.087543	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	0.994949
cardiac_muscle_cell	chr1	167870506	167870558	167870557	-	RAMPAGE_only	3	3	16	0.354485	3.202820	chr1	167870510	167870823	SINE|Alu|AluSq2	+	chr1	167809644	167914102	ADCY10|ENST00000367851.8	-	167809644,167810724,167818071,167822023,167823007,167824475,167824650,167829266,167832986,167833969,167836308,167837248,167845562,167845984,167848360,167854352,167856164,167859806,167860870,167870256,167875130,167878445,167880114,167880490,167883436,167893852,167896594,167899422,167901661,167902015,167903886,167904992,167913975	167809839,167810913,167818267,167822141,167823123,167824572,167824855,167829423,167833162,167834077,167836540,167837318,167845853,167846263,167848489,167854489,167856439,167859893,167861063,167870410,167875186,167878635,167880191,167880609,167883628,167893941,167896691,167899628,167901805,167902054,167903991,167905198,167914102	1.000000
cardiac_muscle_cell	chr19	5680213	5680261	5680248	-	High_confidence	15	15	70	1.550870	5.065260	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.942857
cardiac_muscle_cell	chr1	83182286	83182334	83182286	-	High_confidence	8	11	47	1.041298	4.865982	chr1	83182174	83188201	LINE|L1|L1PA2	+	chr1	83019431	83182602	MSTRG.1560.1	-	83019431,83182169	83021428,83182602	0.574468
cardiac_muscle_cell	chr18	7946875	7946898	7946878	+	High_confidence	98	98	319	7.067537	6.217475	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.711599
cardiac_muscle_cell	chr4	48591494	48591495	48591494	-	RAMPAGE_only	7	7	11	0.243708	2.550341	chr4	48591391	48591952	LINE|L2|L2	+	chr4	48580455	48605846	FRYL|ENST00000506685.1	-	48580455,48581419,48582496,48586620,48589744,48590658,48593929,48595589,48595896,48602019,48603289,48605740	48580951,48581605,48582734,48586728,48589877,48590830,48594016,48595698,48596000,48602121,48603388,48605846	0.909091
cardiac_muscle_cell	chr1	153119468	153119469	153119468	-	RAMPAGE_only	890	902	1001	22.177442	5.406176	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112113	153113515	SPRR2F|ENST00000468739.1	-	153112113,153113473	153112752,153113515	0.979021
cardiac_muscle_cell	chr8	100919827	100919851	100919828	-	RAMPAGE_only	4	6	15	0.332329	3.235926	chr8	100919701	100920019	LTR|ERV1|MER34B-int	-	chr8	100918575	100950571	YWHAZ|NM_001135702.1	-	100918575,100923954,100924134,100924915,100948595,100950405	100920752,100924050,100924298,100925039,100948900,100950571	0.933333
cardiac_muscle_cell	chr15	24983650	24983711	24983650	+	RAMPAGE_only	4	4	19	0.420950	3.169925	chr15	24983509	24983805	SINE|Alu|AluSx	+	chr15	24981993	25002830	MSTRG.11662.20	+	24981993,24998969,25000244,25001357,25002724	24998486,24999078,25000374,25001713,25002830	0.947368
cardiac_muscle_cell	chr17	50737378	50737407	50737390	+	RAMPAGE_only	4	4	12	0.265863	2.845351	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50744660	50750847	LUC7L3|ENST00000504065.5	+	50744660,50745719,50746541,50749218,50750500	50744813,50746003,50746702,50749344,50750847	0.750000
cardiac_muscle_cell	chr6	34757084	34757101	34757100	+	High_confidence	3	3	9	0.199398	2.750000	chr6	34757127	34757285	LINE|L2|L2a	+	chr6	34757093	34773857	SNRPC|NM_003093.2	+	34757093,34757911,34762594,34767907,34770290,34773445	34757551,34757954,34762703,34767997,34770395,34773857	0.777778
cardiac_muscle_cell	chr19	39341546	39341576	39341567	-	High_confidence	8	8	31	0.686814	3.736243	chr19	39340883	39341633	LINE|L2|L2	+	chr19	39328361	39342372	GMFG|ENST00000600322.5	-	39328361,39328999,39329543,39333076,39335260,39335434,39342291	39328548,39329073,39329626,39333126,39335310,39335531,39342372	0.967742
cardiac_muscle_cell	chr2	210693899	210693914	210693913	-	RAMPAGE_only	6	6	21	0.465261	3.921928	chr2	210693758	210694197	LTR|ERVL-MaLR|MLT1H	-	chr2	210440698	210477652	LANCL1|ENST00000448951.5	-	210440698,210441307,210455106,210471958,210476315,210477449	210440744,210441443,210455314,210472076,210476412,210477652	0.619048
cardiac_muscle_cell	chr7	18395180	18395181	18395180	+	RAMPAGE_only	12	12	12	0.265863	3.251629	chr7	18395143	18395371	SINE|MIR|MIRc	+	chr7	18495709	18591544	HDAC9|ENST00000413380.5	+	18495709,18496261,18585280,18590335,18591515	18496023,18496324,18585522,18590486,18591544	0.833333
cardiac_muscle_cell	chr2	218287266	218287280	218287279	-	High_confidence	65	66	141	3.123895	5.953265	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.680851
cardiac_muscle_cell	chrX	24077116	24077326	24077116	+	RAMPAGE_only	17	17	208	4.608300	5.022193	chrX	24077071	24077365	SINE|Alu|AluSx	-	chrX	24054947	24078810	EIF2S3|NM_001415.3	+	24054947,24055614,24057420,24057632,24060087,24062415,24064200,24065997,24067963,24071557,24073090,24076721	24055037,24055678,24057548,24057754,24060182,24062574,24064335,24066092,24068108,24071727,24073263,24078810	1.000000
cardiac_muscle_cell	chr17	8384046	8384060	8384046	-	High_confidence	7	7	24	0.531727	3.882045	chr17	8384033	8384050	SINE|Alu|AluSq	-	chr17	8377515	8383250	RPL26|ENST00000293842.10	-	8377515,8379795,8382142,8383156	8377692,8379936,8382315,8383250	0.666667
cardiac_muscle_cell	chr11	12249193	12249239	12249193	+	RAMPAGE_only	4	4	23	0.509572	4.055958	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.913043
cardiac_muscle_cell	chr3	52644709	52644757	52644709	-	RAMPAGE_only	2	2	16	0.354485	3.323231	chr3	52644388	52644682	SINE|Alu|AluSc	-	chr3	52586429	52678567	PBRM1|ENST00000446103.5	-	52586429,52587352,52589069,52603520,52609312,52615350,52617261,52624896,52627272,52628893,52634601,52641953,52643247,52644703,52648343,52651741,52658198,52662132,52668497,52678499	52586688,52587510,52589252,52603732,52609955,52615456,52617538,52624941,52627370,52629035,52634815,52642045,52643343,52644789,52648442,52651810,52658315,52662276,52668645,52678567	0.937500
cardiac_muscle_cell	chr14	59952125	59952139	59952125	+	RAMPAGE_only	4	4	15	0.332329	3.773557	chr14	59946504	59952523	LINE|L1|L1PA2	-	chr14	59919712	60063559	LRRC9|NR_075071.1	+	59919712,59927910,59928267,59930917,59931618,59931968,59938389,59944588,59959817,59960913,59966588,59967095,59974575,59977224,59978016,59981847,59985104,59997655,59999100,60001965,60003620,60006396,60008091,60016659,60018345,60019120,60022733,60027883,60031994,60053064,60057877,60062010,60063322	59919883,59927991,59928486,59931058,59931682,59932039,59938572,59944744,59960014,59961045,59966765,59967213,59974708,59977347,59978132,59982060,59985224,59997847,59999226,60002100,60003798,60006617,60008214,60016790,60018479,60019260,60022870,60028101,60032067,60053205,60058022,60062179,60063559	0.600000
cardiac_muscle_cell	chr16	69838797	69838819	69838797	+	High_confidence	3	4	13	0.288019	2.931209	chr16	69838688	69838832	LINE|CR1|X7A_LINE	+	chr16	69838736	69941741	WWP2|NM_001270453.1	+	69838736,69840125,69842023,69871803,69888038,69908760,69917708,69925429,69929447,69930129,69931151,69931508,69931801,69933969,69935852,69936311,69937117,69937547,69939026,69939340,69939840	69838889,69840263,69842120,69871931,69888249,69908850,69917883,69925484,69929529,69930258,69931227,69931580,69931890,69934129,69935986,69936452,69937238,69937652,69939123,69939413,69941741	1.000000
cardiac_muscle_cell	chr9	131336715	131336748	131336715	+	RAMPAGE_only	6	7	33	0.731124	4.250000	chr9	131336662	131336759	SINE|MIR|MIRc	+	chr9	131289458	131359022	PLPP7|ENST00000645295.1	+	131289458,131325451,131346788,131348600,131358763	131290448,131325639,131347756,131348870,131359022	0.606061
cardiac_muscle_cell	chr1	218519388	218519415	218519414	+	RAMPAGE_only	9	9	34	0.753280	4.395999	chr1	218519114	218519572	LINE|L2|L2c	-	chr1	218524839	218525978	C1orf143|ENST00000491260.2	+	218524839,218525406	218525080,218525978	0.676471
cardiac_muscle_cell	chr19	20423688	20423704	20423703	-	RAMPAGE_only	35	65	163	3.611312	5.204604	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.699387
cardiac_muscle_cell	chr14	92733111	92733135	92733121	-	RAMPAGE_only	5	5	19	0.420950	3.683542	chr14	92732868	92733169	SINE|Alu|AluSg	+	chr14	92703806	92748612	LGMN|ENST00000555699.5	-	92703806,92709671,92711658,92711836,92712804,92713822,92714375,92716135,92717379,92718746,92732648,92748488	92704361,92709872,92711748,92711955,92712871,92713885,92714451,92716221,92717461,92718844,92732815,92748612	0.894737
cardiac_muscle_cell	chr21	44485452	44485492	44485462	+	High_confidence	27	31	158	3.500535	5.867823	chr21	44485339	44486157	LTR|ERV1|LTR1A2	+	chr21	44485484	44516575	MSTRG.23572.1	+	44485484,44502594,44506646,44508267,44508726,44509078,44509312,44509822,44510664,44510938,44515496	44486230,44502795,44507099,44508309,44508929,44509204,44509406,44509927,44510799,44511071,44516575	0.974684
cardiac_muscle_cell	chr17	47219307	47219326	47219325	+	RAMPAGE_only	3	4	10	0.221553	2.721928	chr17	47219323	47219424	SINE|MIR|MIRc	-	chr17	47209399	47223477	MSTRG.15856.10	+	47209399,47213798,47219529,47221681,47222379,47223013	47209557,47213826,47220053,47221855,47222457,47223477	0.800000
cardiac_muscle_cell	chr3	27821483	27821527	27821518	+	RAMPAGE_only	4	4	20	0.443106	3.784184	chr3	27815983	27821983	LINE|L1|L1PA7	-	chr3	27802761	27860327	LINC01980|ENST00000425195.6	+	27802761,27824649,27848700,27860086	27802850,27824748,27848764,27860327	0.700000
cardiac_muscle_cell	chr7	158863386	158863410	158863400	+	RAMPAGE_only	33	43	145	3.212517	5.877793	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.972414
cardiac_muscle_cell	chr3	6717571	6717585	6717571	+	RAMPAGE_only	2	2	7	0.155087	2.521641	chr3	6717382	6717733	LTR|ERVL-MaLR|MLT1A0	+	chr3	6490478	6736129	AC069277.1|ENST00000433639.1	+	6490478,6717568,6724449,6732270,6735661	6490672,6717667,6724546,6732495,6736129	0.857143
cardiac_muscle_cell	chr13	110179272	110179309	110179301	-	RAMPAGE_only	7	7	23	0.509572	3.762267	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	1.000000
cardiac_muscle_cell	chr19	35399488	35399506	35399488	+	RAMPAGE_only	6	7	19	0.420950	3.392147	chr19	35399184	35399804	LTR|ERV1|MER49	+	chr19	35405606	35416840	LINC01531|ENST00000536898.5	+	35405606,35406584,35409285,35411161,35416478	35405681,35409151,35409472,35411282,35416840	0.789474
cardiac_muscle_cell	chr10	102706282	102706283	102706282	-	RAMPAGE_only	14	15	15	0.332329	3.378783	chr10	102706170	102706459	SINE|Alu|AluSc8	+	chr10	102673730	102714407	ARL3|ENST00000260746.5	-	102673730,102685815,102689892,102699372,102705345,102714272	102676941,102686001,102689943,102699489,102705489,102714407	0.933333
cardiac_muscle_cell	chr8	83968214	83968259	83968258	+	RAMPAGE_only	4	4	18	0.398795	3.725481	chr8	83967386	83969314	LINE|L1|L1PA7	+	chr8	83912712	83987583	MSTRG.35074.4	+	83912712,83967327,83974632,83978571,83979924	83912835,83974590,83976926,83978766,83987583	1.000000
cardiac_muscle_cell	chr12	31447608	31447639	31447608	-	RAMPAGE_only	5	6	21	0.465261	3.060214	chr12	31447606	31447734	LINE|L1|X9_LINE	+	chr12	31424568	31426751	DENND5B|ENST00000537061.1	-	31424568,31426292	31424687,31426751	0.523810
cardiac_muscle_cell	chr17	40648578	40648611	40648578	-	High_confidence	9	9	27	0.598193	3.753270	chr17	40648546	40648925	LINE|L2|L2b	+	chr17	40625002	40648654	SMARCE1|ENST00000643318.1	-	40625002,40630713,40631591,40632194,40635930,40636394,40637491,40645795,40647772	40628993,40630924,40631693,40632367,40636102,40636526,40637572,40645847,40648654	0.888889
cardiac_muscle_cell	chr5	147382883	147382900	147382899	+	High_confidence	24	24	75	1.661647	5.161940	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.666667
cardiac_muscle_cell	chr8	15757796	15757823	15757796	+	RAMPAGE_only	3	4	14	0.310174	2.950212	chr8	15757770	15757946	SINE|MIR|MIRc	+	chr8	15743443	15758277	TUSC3|ENST00000507316.1	+	15743443,15748374,15757790,15758029	15743612,15748465,15757855,15758277	0.714286
cardiac_muscle_cell	chr1	236899246	236899259	236899258	+	RAMPAGE_only	4	4	14	0.310174	3.026987	chr1	236899039	236900641	LINE|L1|L1ME3F	+	chr1	236894340	236900409	MTR|ENST00000470570.1	+	236894340,236897005,236897557	236895550,236897118,236900409	0.928571
cardiac_muscle_cell	chr4	64410802	64410815	64410814	-	RAMPAGE_only	7	7	12	0.265863	3.188722	chr4	64410619	64410999	LINE|L2|L2	+	chr4	64278458	64409398	MSTRG.27289.3	-	64278458,64281473,64289709,64299973,64305165,64309825,64322688,64328511,64375171,64409117	64281086,64281559,64289767,64300017,64305238,64314763,64322792,64328556,64375223,64409398	0.583333
cardiac_muscle_cell	chr10	29142760	29142766	29142762	+	High_confidence	1684	2038	3354	74.308833	6.593070	chr10	29142530	29143374	LTR|ERV1|LTR1A2	+	chr10	29142649	29144044	MSTRG.3917.2	+	29142649,29143607	29143485,29144044	0.974657
cardiac_muscle_cell	chr6	114010112	114010113	114010112	-	RAMPAGE_only	7	7	11	0.243708	2.846439	chr6	114009574	114011168	LTR|ERV1|MER51-int	-	chr6	113933027	113971285	HDAC2|ENST00000519065.5	-	113933027,113941707,113943350,113944279,113945361,113946007,113948978,113949167,113953276,113956012,113956618,113958648,113959905,113970856	113941088,113941765,113943506,113944410,113945470,113946148,113949087,113949260,113953418,113956151,113956693,113958766,113960018,113971285	0.818182
cardiac_muscle_cell	chr10	104254172	104254173	104254172	+	High_confidence	6	6	6	0.132932	2.584963	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254163	104266190	GSTO1|ENST00000493946.1	+	104254163,104255162,104259575,104262978,104266083	104254499,104255271,104259798,104263077,104266190	1.000000
cardiac_muscle_cell	chr9	39809803	39809865	39809858	-	High_confidence	46	76	245	5.428045	4.760615	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803576	39810063	MSTRG.36161.3	-	39803576,39809485,39809730	39803859,39809615,39810063	0.800000
cardiac_muscle_cell	chr5	83095952	83096153	83096152	+	RAMPAGE_only	89	131	507	11.232731	7.020992	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	0.818540
cardiac_muscle_cell	chr5	151158498	151158518	151158498	-	High_confidence	237	238	727	16.106894	7.153780	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.884457
cardiac_muscle_cell	chr3	112302298	112302390	112302375	+	High_confidence	57	60	523	11.587215	7.375341	chr3	112301857	112302478	LTR|ERV1|LTR76	+	chr3	112302223	112330324	MSTRG.25599.1	+	112302223,112306913,112326521,112327610,112329345,112330249	112302714,112307198,112326650,112327706,112329386,112330324	0.646272
cardiac_muscle_cell	chrX	104189952	104189970	104189959	+	RAMPAGE_only	3	3	8	0.177242	2.521641	chrX	104189898	104190084	DNA|hAT-Charlie|MER5A	+	chrX	104186117	104191446	FAM199X|ENST00000299906.5	+	104186117,104186459,104188039,104189607	104186215,104186621,104188177,104191446	0.875000
cardiac_muscle_cell	chr4	110486823	110486848	110486847	+	RAMPAGE_only	3	3	13	0.288019	2.565448	chr4	110486738	110487469	LTR|ERV1|LTR8	-	chr4	110476072	110565285	ENPEP|ENST00000265162.9	+	110476072,110488540,110491032,110506636,110509652,110510244,110513414,110515376,110520007,110520214,110531197,110542750,110543014,110548175,110549345,110549527,110549715,110553314,110559646,110561405	110477058,110488682,110491164,110506757,110509807,110510358,110513549,110515442,110520073,110520366,110531277,110542887,110543070,110548326,110549419,110549632,110549886,110553455,110559725,110565285	0.769231
cardiac_muscle_cell	chr3	33446606	33446610	33446609	+	High_confidence	2721	2877	4626	102.490358	6.346441	chr3	33446461	33447026	LTR|ERV1|LTR12C	+	chr3	33446611	33458005	MSTRG.24768.1	+	33446611,33453035	33447137,33458005	0.961522
cardiac_muscle_cell	chr8	99893225	99893297	99893296	-	High_confidence	6	6	45	0.996988	3.919691	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.977778
cardiac_muscle_cell	chr20	25191790	25191795	25191794	-	RAMPAGE_only	8	8	16	0.354485	3.640224	chr20	25191623	25192078	LTR|ERVL|MER70A	-	chr20	25184671	25196892	LOC101926889|NR_109994.1	-	25184671,25186541,25186896,25187852,25190217,25196622	25186160,25186699,25186979,25187947,25190302,25196892	0.937500
cardiac_muscle_cell	chr6	109250759	109250786	109250759	+	RAMPAGE_only	8	8	23	0.509572	4.001823	chr6	109245218	109251251	LINE|L1|L1PA2	-	chr6	109236613	109270514	LOC100996634|NM_001277339.1	+	109236613,109239327,109242178,109254447,109255370,109257545,109261888,109264800,109267807,109270038	109236780,109239520,109242306,109254648,109255492,109257774,109262091,109264956,109267901,109270514	0.695652
cardiac_muscle_cell	chr10	107023059	107023073	107023072	-	High_confidence	6	7	15	0.332329	3.039149	chr10	107022959	107023152	SINE|MIR|MIRb	+	chr10	107021765	107023551	MSTRG.4922.1	-	107021765,107022840	107022375,107023551	0.733333
cardiac_muscle_cell	chr1	33021424	33021456	33021446	-	RAMPAGE_only	5	5	17	0.376640	3.337175	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.882353
cardiac_muscle_cell	chr1	1655444	1655445	1655444	-	RAMPAGE_only	8	9	11	0.243708	2.521928	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.818182
cardiac_muscle_cell	chr10	20818704	20818705	20818704	-	High_confidence	6	6	8	0.177242	2.521641	chr10	20818659	20818779	LINE|L2|L2b	+	chr10	20813739	20819480	NEBL|ENST00000481592.5	-	20813739,20815624,20817597,20818703,20819423	20814043,20815717,20817692,20818834,20819480	0.750000
cardiac_muscle_cell	chr17	76564137	76564173	76564160	+	RAMPAGE_only	4	4	19	0.420950	3.947703	chr17	76564146	76564423	SINE|Alu|AluSx	-	chr17	76557791	76565279	SNHG16|ENST00000590435.5	+	76557791,76558944,76561287,76563118,76563972	76557857,76559043,76561398,76563482,76565279	0.947368
cardiac_muscle_cell	chr1	202585177	202585216	202585185	+	RAMPAGE_only	3	3	22	0.487416	3.041626	chr1	202585028	202585296	SINE|Alu|AluJb	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.954545
cardiac_muscle_cell	chr13	21539458	21539491	21539475	-	RAMPAGE_only	4	4	14	0.310174	3.334679	chr13	21539425	21539597	SINE|Alu|AluY	-	chr13	21492699	21604214	MICU2|ENST00000382374.8	-	21492699,21495160,21496051,21502925,21510003,21514352,21521244,21522602,21539301,21539656,21566796,21603938	21493353,21495318,21496160,21503097,21510101,21514418,21521327,21522650,21539377,21539688,21566944,21604214	0.642857
cardiac_muscle_cell	chr17	82081601	82081607	82081606	-	RAMPAGE_only	12	12	23	0.509572	3.427333	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	0.913043
cardiac_muscle_cell	chr3	69237179	69237183	69237179	-	RAMPAGE_only	4	4	8	0.177242	2.521641	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.500000
cardiac_muscle_cell	chr16	29697442	29697744	29697614	+	RAMPAGE_only	15	19	420	9.305221	4.676997	chr16	29697491	29697661	SINE|MIR|MIR	+	chr16	29695796	29697995	QPRT|ENST00000564967.1	+	29695796	29697995	0.657143
cardiac_muscle_cell	chr13	20099306	20099319	20099314	+	RAMPAGE_only	6	6	20	0.443106	3.431624	chr13	20099270	20099802	LTR|ERVL|LTR41C	+	chr13	20102700	20103230	LINC01072|ENST00000455848.1	+	20102700,20102925	20102826,20103230	0.650000
cardiac_muscle_cell	chr12	104030726	104030727	104030726	+	High_confidence	295	307	417	9.238755	6.550298	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.935252
cardiac_muscle_cell	chr15	24995234	24995298	24995234	+	RAMPAGE_only	4	4	27	0.598193	3.163074	chr15	24995035	24995326	SINE|Alu|AluSx4	+	chr15	24981993	25002830	MSTRG.11662.20	+	24981993,24998969,25000244,25001357,25002724	24998486,24999078,25000374,25001713,25002830	0.925926
cardiac_muscle_cell	chr1	28617958	28618007	28617958	-	RAMPAGE_only	3	3	20	0.443106	3.521928	chr1	28617880	28617910	SINE|MIR|MIR	-	chr1	28603100	28643005	TAF12|ENST00000263974.4	-	28603100,28605371,28613246,28617952,28621913,28642654	28603574,28605460,28613361,28618030,28622165,28643005	1.000000
cardiac_muscle_cell	chr5	103129664	103129686	103129682	+	High_confidence	2	2	8	0.177242	2.521641	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	0.750000
cardiac_muscle_cell	chr8	15525038	15525052	15525038	+	RAMPAGE_only	3	3	8	0.177242	2.750000	chr8	15524892	15525398	LTR|ERV1|MER87B	+	chr8	15540086	15766649	TUSC3|NM_178234.2	+	15540086,15623079,15650696,15659506,15662155,15673746,15730665,15743537,15748374,15764202	15540568,15623249,15650814,15659647,15662296,15673836,15730729,15743612,15748465,15766649	0.875000
cardiac_muscle_cell	chrX	131785224	131785245	131785243	-	High_confidence	3	5	14	0.310174	3.392747	chrX	131784983	131785287	SINE|Alu|AluSz	+	chrX	131691995	131785262	FIRRE|ENST00000649391.1	-	131691995,131695466,131695843,131703416,131709497,131711650,131749305,131755597,131756610,131768548,131777622,131783886,131785156	131692636,131695620,131695913,131703518,131709556,131711744,131749458,131755746,131756709,131768696,131777744,131784039,131785262	0.928571
cardiac_muscle_cell	chr11	17208515	17208559	17208537	+	RAMPAGE_only	7	7	36	0.797590	4.871178	chr11	17208523	17208605	SINE|MIR|MIRc	-	chr11	17260339	17349980	NUCB2|ENST00000646648.1	+	17260339,17269184,17276007,17282788,17295323,17296103,17301743,17309571,17310824,17311184,17311871,17312027,17315385,17330126,17330901,17337347,17349344	17260501,17269331,17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17337534,17349980	0.555556
cardiac_muscle_cell	chr5	168667686	168667721	168667710	+	RAMPAGE_only	9	10	22	0.487416	3.884184	chr5	168667660	168667779	SINE|MIR|MIRc	+	chr5	168706566	168720884	AC011365.1|ENST00000522615.1	+	168706566,168710054,168712284,168712679,168718068,168719938	168708647,168710200,168712380,168712771,168718185,168720884	0.818182
cardiac_muscle_cell	chr17	47067498	47067534	47067498	-	High_confidence	458	506	2076	45.994376	6.519879	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.913776
cardiac_muscle_cell	chr10	79446868	79446869	79446868	-	RAMPAGE_only	12	13	18	0.398795	2.727497	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.777778
cardiac_muscle_cell	chr5	96979809	96979837	96979809	+	RAMPAGE_only	5	5	10	0.221553	3.121928	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	0.900000
cardiac_muscle_cell	chr9	129489092	129489128	129489125	+	High_confidence	6	6	18	0.398795	2.974938	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.833333
cardiac_muscle_cell	chr17	59619894	59619929	59619894	+	High_confidence	1481	1709	5776	127.968939	6.370349	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.904259
cardiac_muscle_cell	chr17	4610456	4610470	4610469	+	High_confidence	5	5	13	0.288019	3.238901	chr17	4610403	4610704	SINE|Alu|AluJb	+	chr17	4610448	4617650	LINC01996|ENST00000573270.1	+	4610448,4616762	4610833,4617650	1.000000
cardiac_muscle_cell	chr16	46763151	46763337	46763230	-	High_confidence	74	82	735	16.284136	7.236756	chr16	46763076	46763184	SINE|MIR|MIRb	-	chr16	46727237	46763246	MSTRG.13917.8	-	46727237,46729023,46729593,46730592,46732207,46737710,46740056,46763039	46727377,46729133,46729687,46730698,46732668,46738143,46740147,46763246	0.868027
cardiac_muscle_cell	chr1	6639916	6639946	6639916	-	RAMPAGE_only	5	6	15	0.332329	3.189898	chr1	6639724	6639885	SINE|MIR|MIR	-	chr1	6634167	6645057	DNAJC11|ENST00000465508.5	-	6634167,6636116,6637197,6637446,6639901,6644557,6645040	6635700,6636246,6637340,6638364,6640057,6644674,6645057	1.000000
cardiac_muscle_cell	chr2	162657197	162657217	162657197	-	RAMPAGE_only	2	2	10	0.221553	2.921928	chr2	162657011	162657786	LINE|L1|L1MC1	-	chr2	162631719	162665325	MSTRG.21329.1	-	162631719,162653424	162642801,162665325	1.000000
cardiac_muscle_cell	chr3	149752659	149752662	149752661	-	High_confidence	5	8	10	0.221553	2.921928	chr3	149752625	149752732	LINE|L2|L2a	-	chr3	149738469	149752499	COMMD2|ENST00000473414.5	-	149738469,149750677,149751402,149752209,149752377	149741718,149750851,149751485,149752287,149752499	1.000000
cardiac_muscle_cell	chr4	79258867	79258870	79258869	+	High_confidence	13	22	25	0.553882	4.243856	chr4	79257987	79259677	LTR|ERV1|MER52A	+	chr4	79258780	79308654	LINC01088|ENST00000511241.5	+	79258780,79306690,79308272	79259039,79306728,79308654	0.680000
cardiac_muscle_cell	chr5	92776602	92776631	92776602	-	RAMPAGE_only	11	11	32	0.708969	4.288910	chr5	92776298	92776633	LTR|ERV1|LTR29	+	chr5	92410255	92639497	AC124854.1|ENST00000512210.5	-	92410255,92507347,92559798,92639445	92410361,92507465,92560033,92639497	0.531250
cardiac_muscle_cell	chr13	49495600	49495629	49495602	+	High_confidence	4	7	16	0.354485	3.323231	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495609	49528992	PHF11|NM_001040443.2	+	49495609,49506634,49513058,49518017,49520893,49522042,49523174,49524084,49526386,49528510	49496095,49506756,49513166,49518151,49520940,49522107,49523241,49524216,49526458,49528992	0.937500
cardiac_muscle_cell	chr2	181954472	181954492	181954484	+	High_confidence	16	18	55	1.218541	4.620844	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.618182
cardiac_muscle_cell	chr13	30257839	30257866	30257865	-	RAMPAGE_only	3	3	10	0.221553	2.503258	chr13	30257280	30258056	LINE|RTE-BovB|MamRTE1	-	chr13	30208479	30307026	KATNAL1|ENST00000380617.7	-	30208479,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30306939	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307026	0.800000
cardiac_muscle_cell	chr9	90415110	90415113	90415112	-	RAMPAGE_only	7	12	12	0.265863	2.625815	chr9	90413146	90415976	LTR|ERV1|HERVH-int	+	chr9	90300895	90433489	LINC01508|NR_109795.1	-	90300895,90383519,90433430	90301653,90383721,90433489	1.000000
cardiac_muscle_cell	chr17	41871819	41871825	41871819	-	RAMPAGE_only	9	11	18	0.398795	3.454822	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.833333
cardiac_muscle_cell	chr10	102449836	102449865	102449844	+	High_confidence	28	30	133	2.946653	5.326106	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449852	102456293	RPARP-AS1|ENST00000492465.2	+	102449852,102450186,102451398,102452089,102455336	102450022,102450360,102451555,102452187,102456293	0.939850
cardiac_muscle_cell	chr19	20611504	20611505	20611504	+	High_confidence	7	8	11	0.243708	3.121928	chr19	20611050	20611625	LTR|ERV1|LTR61	+	chr19	20611558	20615389	AC010636.1|ENST00000598116.1	+	20611558,20615058	20611855,20615389	0.545455
cardiac_muscle_cell	chr3	54926395	54926438	54926419	-	RAMPAGE_only	3	3	10	0.221553	2.641604	chr3	54926203	54926446	SINE|MIR|MIR	-	chr3	54918236	54928074	LRTM1|ENST00000273286.5	-	54918236,54924618,54927904	54918892,54925215,54928074	0.600000
cardiac_muscle_cell	chr12	93400560	93400798	93400702	+	RAMPAGE_only	16	20	239	5.295114	6.163817	chr12	93400620	93400906	SINE|Alu|AluSg	-	chr12	93378549	93403248	NUDT4|NM_001301023.1	+	93378549,93394608,93395488,93398770,93399176	93378790,93394719,93395533,93398855,93403248	1.000000
cardiac_muscle_cell	chr6	79631434	79631479	79631434	+	High_confidence	2	2	10	0.221553	2.921928	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
cardiac_muscle_cell	chr19	40716719	40716724	40716723	-	High_confidence	12	19	35	0.775435	4.297300	chr19	40716589	40716687	SINE|MIR|MIRc	-	chr19	40704167	40716885	COQ8B|ENST00000601451.5	-	40704167,40710058,40714066,40714277,40714530,40716586	40705447,40710136,40714133,40714397,40714635,40716885	0.885714
cardiac_muscle_cell	chr9	132289149	132289173	132289149	-	RAMPAGE_only	6	7	18	0.398795	3.101881	chr9	132289026	132289571	LTR|ERVK|LTR14	+	chr9	132261355	132311856	SETX|ENST00000436441.5	-	132261355,132269402,132269614,132271709,132275255,132277059,132278069,132281466,132283263,132286422,132288235,132288549,132295871,132296886,132298079,132300629,132311756	132264985,132269489,132269702,132271808,132275420,132277152,132278257,132281574,132283413,132286494,132288351,132288651,132296028,132297054,132298312,132300803,132311856	0.500000
cardiac_muscle_cell	chr17	31762436	31762437	31762436	+	High_confidence	59	60	68	1.506560	4.943307	chr17	31762038	31762862	LTR|ERV1|LTR12	+	chr17	31762439	31769048	AC007923.1|ENST00000577970.1	+	31762439,31769006	31762902,31769048	0.676471
cardiac_muscle_cell	chr22	36328083	36328095	36328094	-	High_confidence	4	5	14	0.310174	3.093069	chr22	36327959	36328139	SINE|MIR|MIRb	+	chr22	36320273	36328952	MYH9|ENST00000463027.1	-	36320273,36320797,36321757,36322428,36326567,36327460,36328858	36320363,36320896,36321821,36322521,36326661,36327488,36328952	0.500000
cardiac_muscle_cell	chr14	40954490	40954558	40954547	+	High_confidence	94	101	446	9.881258	7.571130	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954435	40975877	MSTRG.10579.1	+	40954435,40962789,40974339	40954952,40962842,40975877	0.544843
cardiac_muscle_cell	chr1	16048837	16048862	16048837	+	High_confidence	153	154	511	11.321352	6.497348	chr1	16048792	16048900	SINE|MIR|MIR	+	chr1	16048788	16057308	CLCNKB|ENST00000375667.7	+	16048788,16049617,16049814,16050515,16050874,16051477,16051709,16052197,16053638,16055434,16055677,16056421,16056868	16049245,16049702,16049916,16050600,16051048,16051547,16051820,16052411,16053772,16055523,16055758,16056508,16057308	0.947162
cardiac_muscle_cell	chr1	35145240	35145270	35145269	-	RAMPAGE_only	12	12	23	0.509572	3.551191	chr1	35144755	35145857	LTR|ERV1|HERV3-int	-	chr1	35141514	35146435	AL590434.1|ENST00000641402.1	-	35141514,35144866,35146298	35143033,35145096,35146435	1.000000
cardiac_muscle_cell	chr13	60268008	60268103	60268050	-	High_confidence	6	6	42	0.930522	4.766968	chr13	60266267	60268006	LTR|ERV1|HERV30-int	-	chr13	60214346	60268104	LINC00434|NR_047022.1	-	60214346,60226604,60267954	60214942,60226818,60268104	0.523810
cardiac_muscle_cell	chr1	28506816	28506821	28506816	+	High_confidence	3	3	10	0.221553	3.121928	chr1	28506774	28506950	SINE|Alu|AluSg	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	1.000000
cardiac_muscle_cell	chr22	24011756	24011757	24011756	+	High_confidence	19	20	21	0.465261	3.884184	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.952381
cardiac_muscle_cell	chr3	58842598	58842643	58842642	-	High_confidence	11	12	38	0.841901	4.609384	chr3	58842154	58848179	LINE|L1|L1PA2	+	chr3	58717366	58842357	MSTRG.25275.2	-	58717366,58734471,58753768,58806394,58842146	58717628,58734558,58753863,58806456,58842357	0.605263
cardiac_muscle_cell	chr5	149371589	149371603	149371602	+	High_confidence	7	7	24	0.531727	4.055958	chr5	149371562	149371710	LINE|L2|L2b	-	chr5	149372173	149375116	AC131025.1|ENST00000521756.1	+	149372173,149374708	149372353,149375116	0.625000
cardiac_muscle_cell	chr7	137385505	137385522	137385505	-	RAMPAGE_only	11	11	26	0.576037	3.136842	chr7	137385414	137385650	LINE|CR1|L3	-	chr7	137381041	137454873	MSTRG.33957.2	-	137381041,137395597,137397376,137407874,137412169,137444076,137454753	137391336,137395697,137397413,137407995,137412207,137444102,137454873	0.923077
cardiac_muscle_cell	chr2	170751706	170751708	170751706	+	High_confidence	57	74	87	1.927510	5.132948	chr2	170750015	170751707	LINE|L1|L1MEc	+	chr2	170751804	170752788	EIF2S2P4|ENST00000461070.1	+	170751804	170752788	0.942529
cardiac_muscle_cell	chr1	10282476	10282533	10282532	+	RAMPAGE_only	4	4	18	0.398795	3.683542	chr1	10282562	10282741	LINE|CR1|L3	+	chr1	10232328	10381596	KIF1B|ENST00000620295.2	+	10232328,10256246,10258492,10261904,10267379,10268151,10271501,10272240,10273013,10275427,10276320,10277985,10282321,10291081,10292046,10295085,10295659,10296581,10296896,10297173,10320042,10321708,10323883,10324757,10326110,10334519,10336656,10337073,10337370,10339768,10342049,10343231,10345844,10347760,10348648,10352630,10360928,10361691,10363282,10365099,10365408,10368466,10371140,10374315,10374853,10375254,10378338	10232434,10256323,10258672,10261970,10267558,10268263,10271579,10272306,10273031,10275503,10276399,10278128,10282533,10291161,10292122,10295165,10295766,10296665,10297077,10297246,10320136,10321857,10324062,10324895,10326359,10334638,10336742,10337203,10337533,10339859,10342168,10343287,10345953,10347827,10348733,10352736,10361043,10361825,10363344,10365245,10365648,10368538,10371262,10374465,10375046,10375373,10381596	0.944444
cardiac_muscle_cell	chr2	232890994	232891016	232891004	-	RAMPAGE_only	9	9	40	0.886211	4.443943	chr2	232890857	232891264	LINE|L2|L2c	+	chr2	232878685	232928151	NGEF|NM_001114090.1	-	232878685,232881145,232882185,232883310,232883980,232885279,232888032,232891357,232892897,232894755,232920283,232927043,232927892	232879679,232881250,232882265,232883466,232884144,232885369,232888107,232891487,232893050,232894916,232920585,232927186,232928151	0.575000
cardiac_muscle_cell	chr8	12522682	12522816	12522683	+	RAMPAGE_only	24	37	147	3.256827	5.310008	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437143	12566779	MSTRG.34389.1	+	12437143,12438163,12440968,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566779	0.850340
cardiac_muscle_cell	chr6	122482061	122482094	122482061	+	High_confidence	890	986	3095	68.570614	7.861545	chr6	122481961	122482259	SINE|Alu|AluYe5	-	chr6	122482087	122726971	MSTRG.31822.8	+	122482087,122509451,122581764,122585920,122633282,122675077,122717786,122725127	122482266,122509525,122581844,122586007,122633367,122675144,122717963,122726971	0.871405
cardiac_muscle_cell	chr2	71417084	71417126	71417115	+	RAMPAGE_only	8	8	28	0.620348	4.286790	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.857143
cardiac_muscle_cell	chr3	157533600	157533619	157533600	-	High_confidence	6	6	13	0.288019	3.392747	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157460214	157533606	VEPH1|ENST00000487753.5	-	157460214,157470313,157495211,157533512	157460355,157470529,157495506,157533606	1.000000
cardiac_muscle_cell	chr3	183452137	183452174	183452137	+	RAMPAGE_only	8	9	29	0.642503	4.066109	chr3	183452059	183452354	SINE|Alu|AluSz6	-	chr3	183447650	183455625	LINC00888|ENST00000468380.1	+	183447650,183452077,183454011,183455198	183447947,183452512,183454093,183455625	0.793103
cardiac_muscle_cell	chr11	36289321	36289330	36289321	-	High_confidence	4	4	8	0.177242	2.807355	chr11	36289122	36289309	SINE|MIR|MIR3	-	chr11	36274324	36289424	COMMD9|ENST00000532705.1	-	36274324,36276136,36278476,36280711,36289361	36274772,36276240,36278616,36280837,36289424	0.625000
cardiac_muscle_cell	chr18	36805376	36805411	36805376	-	RAMPAGE_only	3	3	13	0.288019	3.251629	chr18	36805277	36805349	LINE|L2|L2b	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.615385
cardiac_muscle_cell	chr3	33446880	33446897	33446896	+	High_confidence	3	3	8	0.177242	2.500000	chr3	33446461	33447026	LTR|ERV1|LTR12C	+	chr3	33446611	33458005	MSTRG.24768.1	+	33446611,33453035	33447137,33458005	1.000000
cardiac_muscle_cell	chr5	83102821	83102835	83102833	+	RAMPAGE_only	5	9	27	0.598193	4.458591	chr5	83102848	83103023	SINE|MIR|MIR	+	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	0.777778
cardiac_muscle_cell	chr8	12521373	12521374	12521373	+	RAMPAGE_only	9	9	11	0.243708	3.095795	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437143	12566779	MSTRG.34389.1	+	12437143,12438163,12440968,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566779	0.545455
cardiac_muscle_cell	chrX	76173380	76173404	76173403	+	High_confidence	6	6	16	0.354485	3.500000	chrX	76173221	76173522	SINE|Alu|AluJb	-	chrX	76173039	76178196	PBDC1|ENST00000373357.3	+	76173039,76173584,76174889,76175472,76177615	76173168,76173650,76174949,76175613,76178196	0.937500
cardiac_muscle_cell	chr11	121309153	121309164	121309153	+	RAMPAGE_only	2	2	9	0.199398	2.725481	chr11	121309122	121309460	LTR|ERVL-MaLR|MLT1J2	-	chr11	121292867	121313410	SC5D|NM_001024956.2	+	121292867,121303365,121304360,121306385,121307056	121293078,121303585,121304493,121306486,121313410	1.000000
cardiac_muscle_cell	chr2	113583448	113583509	113583448	+	High_confidence	26	26	71	1.573025	4.022486	chr2	113583263	113583560	LINE|L1|L1MB3	-	chr2	113583476	113599034	MSTRG.20915.1	+	113583476,113588549,113595062,113595368,113595692,113596067,113596380,113596670,113597485,113598397,113598606	113584136,113588703,113595161,113595515,113595829,113596203,113596578,113596829,113597638,113598466,113599034	0.971831
cardiac_muscle_cell	chr6	17287978	17287999	17287998	+	RAMPAGE_only	3	3	9	0.199398	2.500000	chr6	17287970	17288220	SINE|MIR|MIRb	-	chr6	17280406	17293023	MSTRG.30445.4	+	17280406,17281418,17282804,17284656,17285052,17290848,17291755	17281327,17281749,17282928,17284711,17290068,17290893,17293023	0.888889
cardiac_muscle_cell	chr2	211591602	211591630	211591629	-	RAMPAGE_only	7	7	18	0.398795	3.239098	chr2	211591346	211591644	LINE|L2|L2c	+	chr2	211375716	212124907	ERBB4|ENST00000402597.6	-	211375716,211386852,211420440,211422006,211424154,211428407,211430944,211561902,211619176,211623921,211630461,211657753,211665322,211673163,211679051,211701966,211704103,211705317,211712049,211713534,211722392,211725075,211750638,211788024,211947429,212124751	211384060,211387150,211420611,211422104,211424301,211428483,211431100,211562088,211619275,211624044,211630594,211657828,211665477,211673257,211679184,211702166,211704194,211705391,211712176,211713648,211722534,211725194,211750704,211788159,211947616,212124907	0.777778
cardiac_muscle_cell	chr11	121295393	121295394	121295393	+	RAMPAGE_only	12	15	18	0.398795	3.683542	chr11	121295120	121295718	LTR|ERV1|MER4A1_	-	chr11	121292867	121313410	SC5D|NM_001024956.2	+	121292867,121303365,121304360,121306385,121307056	121293078,121303585,121304493,121306486,121313410	0.833333
cardiac_muscle_cell	chr17	29667631	29667658	29667657	-	RAMPAGE_only	59	59	121	2.680790	5.870746	chr17	29667384	29667678	DNA|hAT-Charlie|MER1B	+	chr17	29630799	29761417	SSH2|ENST00000649863.1	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677738,29684684,29695523,29703062,29761417	0.727273
cardiac_muscle_cell	chrX	77046737	77046745	77046744	-	High_confidence	3	3	8	0.177242	2.500000	chrX	77046226	77052252	LINE|L1|L1PA3	+	chrX	77046196	77046660	MSTRG.38014.1	-	77046196	77046660	0.500000
cardiac_muscle_cell	chr20	34369410	34369439	34369420	+	RAMPAGE_only	3	3	9	0.199398	2.947703	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	1.000000
cardiac_muscle_cell	chr18	8063083	8063097	8063083	+	RAMPAGE_only	11	11	21	0.465261	3.536887	chr18	8057452	8063463	LINE|L1|L1PA2	-	chr18	8049363	8076564	PTPRM|ENST00000578698.1	+	8049363,8069685,8076454	8049430,8069994,8076564	0.761905
cardiac_muscle_cell	chr4	127655756	127655862	127655861	+	RAMPAGE_only	189	195	1109	24.570213	5.319204	chr4	127650220	127656245	LINE|L1|L1PA2	-	chr4	127632965	127716479	INTU|ENST00000503952.5	+	127632965,127643520,127656635,127663380,127669035,127674123,127684408,127685441,127687740,127700009,127704227,127705590,127706486,127708570,127710912,127713935,127716324	127633180,127644056,127656721,127663584,127669154,127674213,127684486,127685569,127687867,127700063,127704290,127705812,127706969,127708668,127711102,127714093,127716479	0.963030
cardiac_muscle_cell	chr1	166850112	166850144	166850134	+	RAMPAGE_only	2	2	9	0.199398	2.750000	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.888889
cardiac_muscle_cell	chr3	132259991	132260011	132260010	-	RAMPAGE_only	10	10	24	0.531727	4.088779	chr3	132259704	132260165	LTR|ERVL|LTR33	+	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.625000
cardiac_muscle_cell	chr1	24151504	24151543	24151542	+	High_confidence	106	120	527	11.675836	6.096902	chr1	24151159	24151642	LTR|ERV1|LTR10D	-	chr1	24151504	24160681	MSTRG.578.1	+	24151504,24155011,24157254	24151739,24155192,24160681	0.924099
cardiac_muscle_cell	chr5	134613096	134613126	134613096	-	RAMPAGE_only	9	9	28	0.620348	3.272770	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606429	134614903	SAR1B|ENST00000508363.5	-	134606429,134608371,134609570,134612690	134607066,134608503,134609674,134614903	0.928571
cardiac_muscle_cell	chr3	101466869	101466892	101466874	-	RAMPAGE_only	11	11	63	1.395783	5.172300	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.904762
cardiac_muscle_cell	chr19	50490429	50490430	50490429	-	RAMPAGE_only	7	7	11	0.243708	2.921928	chr19	50490122	50490413	SINE|Alu|AluSg4	-	chr19	50486809	50487638	AC020909.2|ENST00000595005.1	-	50486809,50487391	50487188,50487638	0.636364
cardiac_muscle_cell	chr15	53541016	53541120	53541094	-	High_confidence	180	185	796	17.635609	6.391840	chr15	53540633	53546677	LINE|L1|L1PA2	+	chr15	53513740	53541103	WDR72|ENST00000567224.1	-	53513740,53523217,53540889	53517754,53523322,53541103	0.928392
cardiac_muscle_cell	chr18	50659308	50659335	50659308	+	RAMPAGE_only	3	3	16	0.354485	3.323231	chr18	50659243	50659313	DNA|hAT-Tip100|MER91B	-	chr18	50560641	50706139	MAPK4|ENST00000588540.1	+	50560641,50663088,50704529	50560759,50664504,50706139	0.687500
cardiac_muscle_cell	chr8	83968341	83968374	83968341	+	RAMPAGE_only	4	4	27	0.598193	3.954530	chr8	83967386	83969314	LINE|L1|L1PA7	+	chr8	83912712	83987583	MSTRG.35074.4	+	83912712,83967327,83974632,83978571,83979924	83912835,83974590,83976926,83978766,83987583	1.000000
cardiac_muscle_cell	chr10	104254026	104254069	104254062	+	High_confidence	18	18	50	1.107764	4.903465	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254163	104266190	GSTO1|ENST00000493946.1	+	104254163,104255162,104259575,104262978,104266083	104254499,104255271,104259798,104263077,104266190	0.940000
cardiac_muscle_cell	chr12	6582139	6582232	6582139	-	High_confidence	8	8	70	1.550870	5.495993	chr12	6581880	6582102	SINE|Alu|AluSx1	-	chr12	6570190	6581343	CHD4|ENST00000644652.1	-	6570190,6570868,6573073,6577784,6578028,6578408,6578845,6580581,6581043,6581290	6570693,6571032,6573269,6577917,6578137,6578546,6578917,6580699,6581173,6581343	0.857143
cardiac_muscle_cell	chr20	37297344	37297345	37297344	+	High_confidence	22	22	25	0.553882	3.292481	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.960000
cardiac_muscle_cell	chr3	186786927	186786947	186786946	+	High_confidence	3	5	12	0.265863	3.084963	chr3	186786926	186787056	SINE|Alu|AluJb	-	chr3	186787406	186788199	EIF4A2|ENST00000461021.1	+	186787406,186787802	186787584,186788199	0.500000
cardiac_muscle_cell	chr15	57451517	57451569	57451534	+	RAMPAGE_only	12	12	91	2.016131	5.054668	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.989011
cardiac_muscle_cell	chr6	126020255	126020256	126020255	+	RAMPAGE_only	21	21	25	0.553882	3.625815	chr6	126019803	126020820	DNA|TcMar-Tigger|Tigger12	+	chr6	125986506	126203817	TRMT11|ENST00000648977.1	+	125986506,125993756,125995966,125998052,125998222,125998549,125999456,126006841,126008391,126008656,126010924,126012770,126012969,126021159,126038704,126040794,126053122,126112865,126114704,126115344,126115742,126174824,126202027	125986622,125993822,125996040,125998134,125998315,125998684,125999613,126006954,126008472,126008745,126011417,126012852,126013101,126021280,126038925,126040845,126053190,126112954,126114739,126115493,126115855,126174911,126203817	0.760000
cardiac_muscle_cell	chr4	65998820	65998858	65998820	+	High_confidence	7	7	28	0.620348	3.238921	chr4	65993299	65999302	LINE|L1|L1PA2	-	chr4	65998845	66150012	AC116049.2|ENST00000508572.1	+	65998845,66122355,66135387,66149873	65999308,66122428,66135466,66150012	0.785714
cardiac_muscle_cell	chr3	101467039	101467072	101467063	-	RAMPAGE_only	16	18	57	1.262851	4.737424	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.894737
cardiac_muscle_cell	chr4	65024461	65024479	65024461	-	High_confidence	8	15	52	1.152075	4.630868	chr4	65024156	65024597	LTR|ERVL-MaLR|MSTB1	-	chr4	64914280	65024485	LINC02232|ENST00000509932.2	-	64914280,64926591,64937606,64939272,64939955,64977488,65004402,65008781,65024236	64917643,64926661,64937839,64939365,64940036,64977629,65004501,65008912,65024485	0.519231
cardiac_muscle_cell	chr11	67619986	67619987	67619986	+	High_confidence	22563	22717	23488	520.383385	5.815982	chr11	67618852	67620425	LTR|ERV1|LTR12C	+	chr11	67619993	67640431	MSTRG.6357.4	+	67619993,67636532	67628062,67640431	0.963130
cardiac_muscle_cell	chr12	106985290	106985321	106985307	-	RAMPAGE_only	3	3	10	0.221553	2.846439	chr12	106985200	106985407	LINE|L2|L2c	+	chr12	106977548	106987126	MTERF2|ENST00000552029.1	-	106977548,106985114	106978771,106987126	0.500000
cardiac_muscle_cell	chr18	39800271	39800305	39800297	-	High_confidence	45	49	228	5.051405	6.557861	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.662281
cardiac_muscle_cell	chr12	21395454	21395465	21395454	-	High_confidence	10	12	20	0.443106	3.536887	chr12	21395009	21401039	LINE|L1|L1PA2	+	chr12	21264599	21395437	SLCO1A2|NM_134431.3	-	21264599,21274468,21275359,21292163,21293944,21295596,21297403,21300347,21301170,21304426,21306881,21314548,21318781,21334587,21374398,21394905	21269767,21274586,21275424,21292336,21294110,21295792,21297568,21300569,21301269,21304573,21306988,21314681,21318923,21334709,21374525,21395437	0.800000
cardiac_muscle_cell	chr9	94094611	94094616	94094611	+	RAMPAGE_only	5	5	13	0.288019	3.026987	chr9	94089082	94095103	LINE|L1|L1PA2	-	chr9	94084463	94109854	PTPDC1|ENST00000288976.3	+	94084463,94085250,94087830,94088144,94095316,94097320,94101565,94104274,94107827	94084768,94085422,94087911,94088263,94095454,94098579,94101751,94104385,94109854	0.692308
cardiac_muscle_cell	chr2	79373881	79373912	79373886	+	RAMPAGE_only	158	159	266	5.893306	6.417476	chr2	79373725	79373942	SINE|MIR|MIRb	-	chr2	79369553	80648689	MSTRG.20524.6	+	79369553,79373830,79505053,79651551,79744386,79858012,79869815,79874075,79909593,80393210,80419448,80544981,80545906,80555692,80574162,80581705,80589303,80604073,80608183,80619084,80647584	79369582,79374013,79505182,79651658,79744582,79858179,79869935,79874342,79909797,80393291,80419601,80545074,80546063,80555893,80574314,80581819,80589485,80604179,80608318,80619228,80648689	0.744361
cardiac_muscle_cell	chr4	158173024	158173025	158173024	-	High_confidence	17	17	22	0.487416	3.784942	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.818182
cardiac_muscle_cell	chr6	43013156	43013393	43013392	-	High_confidence	71	71	205	4.541834	5.719982	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.985366
cardiac_muscle_cell	chr19	58314833	58314868	58314833	+	RAMPAGE_only	3	5	13	0.288019	3.180833	chr19	58314839	58315267	LTR|ERVK|LTR3	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.692308
cardiac_muscle_cell	chr4	81154221	81154274	81154221	-	High_confidence	17	18	64	1.417938	4.812453	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.859375
cardiac_muscle_cell	chr4	48255346	48255365	48255364	-	RAMPAGE_only	5	5	12	0.265863	3.418296	chr4	48255094	48255505	LTR|ERVL-MaLR|MLT1K	-	chr4	48135782	48269797	TEC|NM_003215.2	-	48135782,48138664,48138903,48141354,48145078,48145407,48146324,48149556,48150862,48156679,48163701,48167777,48168585,48170247,48171367,48176081,48228476,48269751	48137499,48138822,48139022,48141419,48145295,48145579,48146399,48149690,48150942,48156734,48163767,48167953,48168626,48170376,48171449,48176186,48228659,48269797	1.000000
cardiac_muscle_cell	chr1	218519494	218519495	218519494	+	RAMPAGE_only	8	8	12	0.265863	2.522055	chr1	218519114	218519572	LINE|L2|L2c	-	chr1	218524839	218525978	C1orf143|ENST00000491260.2	+	218524839,218525406	218525080,218525978	1.000000
cardiac_muscle_cell	chr21	40577388	40577408	40577406	-	RAMPAGE_only	4	6	10	0.221553	2.721928	chr21	40577281	40577547	LTR|ERV1|HERVS71-int	-	chr21	40012413	40369270	DSCAM|ENST00000617870.4	-	40012413,40042370,40044077,40051957,40055724,40062868,40075036,40078686,40080151,40083907,40085601,40087169,40093720,40124194,40133853,40142557,40144490,40167217,40178926,40187130,40187890,40189041,40276096,40296054,40312080,40338100,40339118,40347669,40353464,40369098	40013386,40042673,40044275,40052107,40055840,40062899,40075213,40078977,40080340,40084006,40085765,40087287,40093874,40124328,40134009,40142704,40144731,40167288,40179094,40187259,40187987,40189238,40276270,40296174,40312359,40338376,40339415,40347945,40353743,40369270	0.600000
cardiac_muscle_cell	chr3	132285409	132285410	132285409	-	High_confidence	889	949	1263	27.982128	8.234386	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.559778
cardiac_muscle_cell	chr14	23406380	23406406	23406405	-	RAMPAGE_only	6	6	15	0.332329	3.506891	chr14	23406293	23406406	SINE|MIR|MIRb	-	chr14	23382018	23407592	MYH6|ENST00000356287.3	-	23382018,23382427,23383224,23384441,23384915,23385927,23386314,23387528,23387757,23388154,23388858,23389392,23389592,23390056,23392561,23392911,23393341,23393665,23394067,23396283,23396693,23396962,23397169,23397542,23398727,23400255,23400708,23402463,23402696,23403347,23403714,23404295,23404710,23405099,23405222,23405626,23407022,23407575	23382063,23382562,23383320,23384717,23385041,23386131,23386623,23387653,23387923,23388338,23389055,23389511,23389719,23390446,23392652,23393057,23393518,23393908,23394323,23396420,23396817,23397080,23397257,23397613,23399037,23400426,23400977,23402602,23402800,23403446,23403778,23404388,23404822,23405127,23405379,23405770,23407236,23407592	0.733333
cardiac_muscle_cell	chr4	152412488	152412529	152412528	-	High_confidence	8	8	23	0.509572	3.697846	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.956522
cardiac_muscle_cell	chr15	34988764	34988768	34988764	-	High_confidence	6	6	14	0.310174	3.378783	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.928571
cardiac_muscle_cell	chr12	8788249	8788253	8788252	+	High_confidence	125	136	220	4.874163	6.042430	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.854545
cardiac_muscle_cell	chr5	168549842	168549852	168549842	-	RAMPAGE_only	2	2	9	0.199398	2.750000	chr5	168549776	168549944	SINE|Alu|AluSc8	-	chr5	168548494	168579600	PANK3|ENST00000239231.6	-	168548494,168559031,168561392,168563888,168566012,168568645,168579255	168557621,168559157,168561516,168564065,168566266,168568998,168579600	0.888889
cardiac_muscle_cell	chr3	100734358	100734369	100734358	+	RAMPAGE_only	10	10	20	0.443106	3.747413	chr3	100734224	100734464	LINE|L1|L1M4a1	-	chr3	100742475	100748963	TFG|ENST00000481203.1	+	100742475,100748148	100744931,100748963	0.700000
cardiac_muscle_cell	chr4	61517401	61517444	61517440	+	RAMPAGE_only	33	34	171	3.788554	5.875292	chr4	61517137	61518029	DNA|hAT-Charlie|Charlie17b	+	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.859649
cardiac_muscle_cell	chr6	77369106	77369167	77369166	-	High_confidence	156	228	657	14.556024	7.528380	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77273025	77369158	MSTRG.31326.1	-	77273025,77316635,77350621,77368885	77273307,77316704,77350734,77369158	0.634703
cardiac_muscle_cell	chr19	17075184	17075200	17075184	-	High_confidence	4	4	13	0.288019	2.855389	chr19	17075045	17075226	SINE|MIR|MIRb	-	chr19	17049765	17075200	HAUS8|ENST00000593360.1	-	17049765,17052824,17055860,17058548,17058810,17059556,17059996,17062697,17069030,17073273	17050176,17052966,17056002,17058707,17058876,17059651,17060092,17062779,17069086,17075200	0.923077
cardiac_muscle_cell	chrX	73994930	73994949	73994930	+	RAMPAGE_only	3	3	15	0.332329	2.753434	chrX	73994826	73995038	SINE|Alu|AluSp	-	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.933333
cardiac_muscle_cell	chr5	140700445	140700452	140700445	+	High_confidence	1351	1921	3887	86.117601	4.991575	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.983278
cardiac_muscle_cell	chr6	130978700	130978739	130978732	-	High_confidence	17	18	60	1.329317	5.242398	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.583333
cardiac_muscle_cell	chr22	37849317	37849333	37849317	-	High_confidence	105	108	428	9.482463	6.161900	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.981308
cardiac_muscle_cell	chr10	110835177	110835178	110835177	+	High_confidence	13	13	16	0.354485	3.272906	chr10	110835193	110835289	SINE|MIR|MIR	+	chr10	110835177	110836258	RBM20|ENST00000465774.2	+	110835177,110835867	110835691,110836258	0.875000
cardiac_muscle_cell	chr1	113758059	113758085	113758084	-	RAMPAGE_only	9	9	31	0.686814	4.284684	chr1	113758040	113758255	SINE|Alu|AluSq2	+	chr1	113697201	113759155	PHTF1|ENST00000393357.6	-	113697201,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113759155	0.870968
cardiac_muscle_cell	chr15	52548793	52548829	52548828	-	RAMPAGE_only	3	3	7	0.155087	2.521641	chr15	52548772	52548988	DNA|TcMar-Tigger|MamRep434	-	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	1.000000
cardiac_muscle_cell	chr6	2990742	2990755	2990748	-	RAMPAGE_only	144	162	331	7.333400	4.937169	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.912387
cardiac_muscle_cell	chr4	99906550	99906570	99906550	-	High_confidence	3	3	10	0.221553	3.321928	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	1.000000
cardiac_muscle_cell	chr19	50495991	50496187	50496186	-	RAMPAGE_only	56	57	168	3.722088	5.495156	chr19	50496046	50496212	SINE|Alu|AluJo	+	chr19	50493105	50497689	MSTRG.19224.1	-	50493105	50497689	0.904762
cardiac_muscle_cell	chr1	57725451	57725484	57725451	-	RAMPAGE_only	171	188	276	6.114859	7.018408	chr1	57725173	57725585	LTR|ERV1|MER110	+	chr1	56994777	57424057	DAB1|ENST00000371236.6	-	56994777,57010679,57011144,57014882,57023530,57025980,57062883,57069359,57071022,57071521,57072282,57136542,57145289,57290963,57423929	56998128,57010790,57011272,57015431,57023639,57026043,57062943,57069425,57071061,57071641,57072414,57136641,57145429,57291166,57424057	0.547101
cardiac_muscle_cell	chr5	180830987	180831032	180831009	+	High_confidence	21	21	145	3.212517	5.962374	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.889655
cardiac_muscle_cell	chrX	47658609	47658630	47658629	-	High_confidence	10	16	41	0.908367	2.782236	chrX	47658369	47658606	SINE|MIR|MIR	-	chrX	47651800	47659107	UXT|ENST00000485641.5	-	47651800,47652080,47657182,47657781,47658829	47651895,47652144,47657290,47657863,47659107	1.000000
cardiac_muscle_cell	chr15	80059915	80059933	80059918	+	High_confidence	312	365	949	21.025368	5.899820	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.979979
cardiac_muscle_cell	chr5	102671615	102671720	102671719	-	High_confidence	19	19	91	2.016131	5.752246	chr5	102671229	102677260	LINE|L1|L1PA2	+	chr5	102609155	102671559	LINC00491|ENST00000510145.1	-	102609155,102671226	102609766,102671559	0.604396
cardiac_muscle_cell	chr14	103848918	103848919	103848918	-	High_confidence	14	14	21	0.465261	3.184184	chr14	103848808	103849048	SINE|MIR|MIRb	+	chr14	103735113	103848681	MSTRG.11500.9	-	103735113,103736002,103737693,103738678,103738885,103739823,103741789,103742653,103746372,103749793,103752999,103754069,103757649,103778744,103784794,103797370,103848271	103735195,103736202,103737860,103738812,103739023,103740593,103742291,103742823,103746553,103749934,103753196,103754244,103757751,103778821,103784914,103797518,103848681	0.571429
cardiac_muscle_cell	chr19	51354788	51354842	51354823	-	High_confidence	33	36	119	2.636479	5.395380	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.983193
cardiac_muscle_cell	chr2	182030721	182030774	182030747	+	High_confidence	75	77	288	6.380723	5.877512	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.579861
cardiac_muscle_cell	chr4	103085370	103085385	103085370	-	RAMPAGE_only	3	3	7	0.155087	2.521641	chr4	103085151	103085336	DNA|hAT-Charlie|MER58A	-	chr4	103079478	103099808	BDH2|ENST00000464039.5	-	103079478,103082080,103082870,103085348,103091176,103092599,103095202,103096182,103098643,103099782	103079755,103082173,103082929,103086540,103091285,103092696,103095281,103096274,103099400,103099808	0.571429
cardiac_muscle_cell	chr11	17352281	17352310	17352281	+	High_confidence	5	5	37	0.819746	4.204511	chr11	17352168	17352474	SINE|Alu|AluY	-	chr11	17352516	17353300	MSTRG.5632.1	+	17352516	17353300	0.837838
cardiac_muscle_cell	chr14	20342767	20342789	20342769	-	RAMPAGE_only	7	10	30	0.664659	3.666248	chr14	20342726	20343030	SINE|Alu|AluY	-	chr14	20311367	20333312	CCNB1IP1|ENST00000437553.6	-	20311367,20313467,20316226,20317793,20325538,20326715,20329173,20333253	20311752,20313801,20316560,20317974,20325653,20326793,20329373,20333312	0.933333
cardiac_muscle_cell	chr1	42959478	42959496	42959478	+	High_confidence	8	8	15	0.332329	3.323231	chr1	42959490	42959595	LINE|L2|L2c	+	chr1	42959048	42983358	SLC2A1-AS1|NR_033967.1	+	42959048,42970248,42973973,42983124	42959577,42970394,42974188,42983358	0.533333
cardiac_muscle_cell	chr3	14225322	14225332	14225331	+	High_confidence	7	7	18	0.398795	3.337175	chr3	14225057	14225513	LTR|ERVK|LTR3A	+	chr3	14225377	14230528	MSTRG.24570.1	+	14225377,14229704	14225626,14230528	0.777778
cardiac_muscle_cell	chr22	39320317	39320340	39320334	-	High_confidence	5	5	26	0.576037	3.938722	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.923077
cardiac_muscle_cell	chr1	19344359	19344389	19344388	-	RAMPAGE_only	10	10	24	0.531727	3.762267	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.916667
cardiac_muscle_cell	chr12	51418117	51418158	51418157	+	RAMPAGE_only	9	9	35	0.775435	4.393062	chr12	51418065	51418366	LINE|CR1|L3	+	chr12	51420099	51453586	SLC4A8|ENST00000548352.5	+	51420099,51440707,51450875,51452123,51453538	51420208,51440789,51451022,51452259,51453586	0.657143
cardiac_muscle_cell	chrX	74000118	74000157	74000156	+	RAMPAGE_only	4	5	10	0.221553	2.921928	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.900000
cardiac_muscle_cell	chr1	31376356	31376357	31376356	-	High_confidence	205	209	209	4.630455	4.838483	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.808612
cardiac_muscle_cell	chr10	52955696	52955697	52955696	-	High_confidence	29	30	32	0.708969	4.093139	chr10	52955588	52956110	LTR|ERV1|LTR6A	-	chr10	52946430	52955585	AC073174.2|ENST00000648218.1	-	52946430,52955381	52952970,52955585	0.781250
cardiac_muscle_cell	chr18	199274	199305	199304	+	RAMPAGE_only	5	5	14	0.310174	3.182006	chr18	199329	199945	DNA|TcMar-Tigger|Tigger17a	+	chr18	196538	211268	USP14|ENST00000578786.1	+	196538,197615,198046,199201,202879,203097,204563,209970,210385,211132	196767,197696,198132,199316,202945,203190,204692,210031,210493,211268	1.000000
cardiac_muscle_cell	chr7	33351953	33351978	33351977	+	RAMPAGE_only	4	6	13	0.288019	3.026987	chr7	33351872	33352111	LTR|ERV1|LTR27B	-	chr7	33344606	33605626	BBS9|ENST00000434373.3	+	33344606,33349067,33351218,33352858,33357854,33367766,33383665,33387991,33505462,33533953,33604864	33344634,33349170,33351323,33352873,33357995,33367862,33383838,33388144,33505645,33534176,33605626	0.769231
cardiac_muscle_cell	chr17	2975599	2975609	2975599	+	RAMPAGE_only	3	3	6	0.132932	2.584963	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.500000
cardiac_muscle_cell	chr9	20658312	20658349	20658312	+	High_confidence	147	150	832	18.433199	6.431550	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	MSTRG.35895.2	+	20658308,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.854567
cardiac_muscle_cell	chr10	17920508	17920552	17920508	+	RAMPAGE_only	3	3	15	0.332329	3.106891	chr10	17920352	17920743	LTR|ERVL-MaLR|MLT1A1	+	chr10	17951838	18043292	SLC39A12|ENST00000377369.6	+	17951838,17953190,17961580,17965482,17977901,17981311,17987478,17991150,17993180,17995655,18000666,18003170,18042704	17952025,17953537,17961862,17965690,17978074,17981483,17987651,17991303,17993291,17995722,18000825,18003358,18043292	0.533333
cardiac_muscle_cell	chr7	40490104	40490121	40490104	+	RAMPAGE_only	3	3	7	0.155087	2.521641	chr7	40489709	40490698	LINE|L1|L1MA10	-	chr7	40742493	40860631	MSTRG.32830.8	+	40742493,40749433,40860315	40742692,40749497,40860631	0.857143
cardiac_muscle_cell	chr7	107580467	107580507	107580506	+	High_confidence	7	7	25	0.553882	3.509275	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580467	107583982	BCAP29|ENST00000473124.1	+	107580467,107583881	107580864,107583982	0.520000
cardiac_muscle_cell	chr1	65229059	65229076	65229075	+	RAMPAGE_only	5	6	9	0.199398	2.725481	chr1	65228934	65229173	SINE|MIR|MIRb	-	chr1	65148202	65232136	AK4|ENST00000327299.7	+	65148202,65190709,65218753,65224751,65226062	65148552,65190829,65218926,65224870,65232136	1.000000
cardiac_muscle_cell	chr3	43566313	43566339	43566313	-	RAMPAGE_only	8	8	21	0.465261	3.146439	chr3	43565822	43571847	LINE|L1|L1PA2	+	chr3	43366347	43621965	ANO10|ENST00000350459.8	-	43366347,43432610,43549719,43555277,43561219,43565652,43574808,43580352,43598531,43600383,43605713,43621908	43366974,43432727,43549848,43555469,43561402,43565727,43574864,43580472,43598666,43600581,43605863,43621965	0.619048
cardiac_muscle_cell	chr11	38424781	38424953	38424854	+	High_confidence	42	60	583	12.916532	6.919395	chr11	38424586	38425121	LTR|ERVL|MLT2B3	+	chr11	38424801	38433365	MSTRG.5847.1	+	38424801,38429947	38425041,38433365	0.698113
cardiac_muscle_cell	chr6	41052368	41052369	41052368	-	RAMPAGE_only	18	18	18	0.398795	3.281036	chr6	41051836	41052409	LINE|L2|L2a	+	chr6	41026910	41039217	UNC5CL|ENST00000244565.7	-	41026910,41030387,41030654,41031680,41032035,41032883,41033880,41034689,41039161	41028595,41030501,41030755,41031748,41032137,41033146,41034181,41035135,41039217	0.500000
cardiac_muscle_cell	chr12	53427241	53427250	53427241	+	RAMPAGE_only	50	53	96	2.126908	5.097484	chr12	53427040	53427257	LINE|L2|L2a	-	chr12	53425081	53431527	MSTRG.8306.7	+	53425081,53425454,53425688,53428895,53429452,53429830,53430145,53431176	53425164,53425487,53425919,53429010,53429625,53429978,53430282,53431527	0.979167
cardiac_muscle_cell	chr4	124996	125006	125005	+	High_confidence	3	3	8	0.177242	2.521641	chr4	124971	125157	LTR|ERV1|MER57E3	-	chr4	124537	162701	ZNF718|ENST00000609714.1	+	124537,130787,131409,160911	125296,130914,131505,162701	0.625000
cardiac_muscle_cell	chrX	73999766	73999783	73999766	+	RAMPAGE_only	12	12	24	0.531727	4.084963	chrX	73999206	73999999	LINE|L1|L1M3de	+	chrX	73944341	74000491	JPX|ENST00000414209.5	+	73944341,73944583,73946998,73998767,73998953	73944465,73944662,73947374,73998844,74000491	0.833333
cardiac_muscle_cell	chr9	132319377	132319387	132319382	-	RAMPAGE_only	3	3	9	0.199398	2.750000	chr9	132319064	132319644	LINE|L2|L2a	+	chr9	132261355	132311856	SETX|ENST00000436441.5	-	132261355,132269402,132269614,132271709,132275255,132277059,132278069,132281466,132283263,132286422,132288235,132288549,132295871,132296886,132298079,132300629,132311756	132264985,132269489,132269702,132271808,132275420,132277152,132278257,132281574,132283413,132286494,132288351,132288651,132296028,132297054,132298312,132300803,132311856	0.888889
cardiac_muscle_cell	chr7	137254858	137254969	137254968	-	RAMPAGE_only	20	27	188	4.165194	5.519369	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.984043
cardiac_muscle_cell	chr4	64278953	64280106	64279236	-	RAMPAGE_only	114	114	2441	54.081056	7.570652	chr4	64278475	64279257	LINE|L1|L1MA5A	-	chr4	64278458	64409398	MSTRG.27289.3	-	64278458,64281473,64289709,64299973,64305165,64309825,64322688,64328511,64375171,64409117	64281086,64281559,64289767,64300017,64305238,64314763,64322792,64328556,64375223,64409398	0.990987
cardiac_muscle_cell	chr19	18227905	18227906	18227905	-	RAMPAGE_only	14	14	14	0.310174	3.324863	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
cardiac_muscle_cell	chr12	76085621	76085634	76085633	-	High_confidence	15	15	24	0.531727	3.845351	chr12	76085540	76085990	DNA|hAT-Charlie|Charlie1b	+	chr12	76036586	76085033	NAP1L1|ENST00000618691.4	-	76036586,76049199,76049755,76050530,76053090,76053204,76053769,76055018,76056032,76059797,76060137,76067370,76068908,76074202,76084566	76048464,76049250,76049785,76050653,76053110,76053350,76053909,76055090,76056161,76059878,76060279,76067473,76068994,76074239,76085033	0.875000
cardiac_muscle_cell	chr9	38467420	38467467	38467466	+	High_confidence	18	25	104	2.304150	5.721283	chr9	38467291	38467773	LINE|L1|L1ME1	-	chr9	38467566	38504160	MSTRG.36133.4	+	38467566,38469846,38471887,38501969,38503751	38467616,38469965,38471933,38502081,38504160	0.711538
cardiac_muscle_cell	chr22	42115542	42115545	42115544	-	RAMPAGE_only	5	7	9	0.199398	2.500000	chr22	42115425	42115918	LTR|ERV1|LTR10G	-	chr22	42085524	42090955	NDUFA6|ENST00000498737.7	-	42085524,42087059,42090605	42086314,42087175,42090955	0.555556
cardiac_muscle_cell	chr13	60267652	60267721	60267706	+	High_confidence	32	32	330	7.311245	5.478473	chr13	60266267	60268006	LTR|ERV1|HERV30-int	-	chr13	60267727	60268426	MSTRG.9882.1	+	60267727	60268426	0.966667
cardiac_muscle_cell	chr2	217756554	217756656	217756560	-	High_confidence	22	32	210	4.652610	5.687885	chr2	217756466	217756533	SINE|MIR|MIR3	-	chr2	217284022	217756593	DIRC3|NR_026597.1	-	217284022,217317965,217318919,217325845,217327996,217425301,217426590,217427390,217432922,217433947,217478380,217599611,217756467	217284863,217318201,217319177,217325970,217328152,217425522,217426786,217427473,217433021,217434116,217478558,217600829,217756593	0.823810
cardiac_muscle_cell	chr2	173705183	173705226	173705202	+	RAMPAGE_only	5	5	18	0.398795	3.286896	chr2	173699375	173705410	LINE|L1|L1PA2	-	chr2	174395728	174429575	SCRN3|NM_024583.4	+	174395728,174398274,174399921,174400989,174404102,174422884,174424474,174427712	174395817,174398442,174400103,174401189,174404315,174423047,174424649,174429575	0.777778
cardiac_muscle_cell	chr13	20811071	20811072	20811071	-	RAMPAGE_only	18	18	19	0.420950	3.461320	chr13	20811062	20811281	LINE|L2|L2	-	chr13	20777356	20832405	MSTRG.9455.7	-	20777356,20786964,20787480,20788485,20790461,20796075,20796763,20799164,20800155,20800830,20807456,20808435,20809082,20809790,20821703,20822131,20831751	20783919,20787057,20787598,20788616,20790580,20796256,20797057,20799339,20800325,20800990,20807634,20808581,20809225,20809967,20821878,20822289,20832405	0.526316
cardiac_muscle_cell	chr1	235109740	235110194	235109898	-	RAMPAGE_only	17	17	424	9.393842	5.410608	chr1	235109784	235110109	DNA|TcMar-Tigger|Tigger10	-	chr1	235109335	235128936	TOMM20|ENST00000366607.4	-	235109335,235113767,235119817,235122325,235128594	235112108,235113910,235119899,235122372,235128936	0.995283
cardiac_muscle_cell	chr15	58851957	58851958	58851957	+	RAMPAGE_only	10	10	10	0.221553	2.646439	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	1.000000
cardiac_muscle_cell	chr3	55905799	55905864	55905834	-	RAMPAGE_only	4	4	25	0.553882	3.863465	chr3	55905721	55906117	LINE|L2|L2b	+	chr3	55511139	55766799	ERC2|ENST00000487287.1	-	55511139,55699377,55734770,55766683	55511276,55699512,55734914,55766799	0.880000
cardiac_muscle_cell	chr1	6208681	6208682	6208681	-	High_confidence	89	90	91	2.016131	3.909410	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.912088
cardiac_muscle_cell	chr14	77710836	77710867	77710866	+	High_confidence	5	5	20	0.443106	2.595462	chr14	77710914	77711213	LINE|L1|L1MA1	+	chr14	77710643	77717584	SLIRP|ENST00000556956.1	+	77710643,77715771,77717495	77710896,77715879,77717584	0.950000
cardiac_muscle_cell	chr12	45292684	45292722	45292685	+	High_confidence	18	31	99	2.193373	5.285927	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.919192
cardiac_muscle_cell	chr13	49495740	49495750	49495740	+	High_confidence	4	4	11	0.243708	2.921928	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495664	49518060	PHF11|ENST00000481509.5	+	49495664,49513058,49518017	49496095,49513166,49518060	0.727273
cardiac_muscle_cell	chr20	35713403	35713424	35713403	-	High_confidence	4	4	9	0.199398	2.503258	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.555556
cardiac_muscle_cell	chr2	55618850	55618904	55618869	-	High_confidence	14	14	52	1.152075	5.301307	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55588458	55618880	MSTRG.20178.5	-	55588458,55603977,55615450,55617143,55618065	55588956,55604076,55615506,55617978,55618880	0.923077
cardiac_muscle_cell	chr16	30876009	30876052	30876009	+	High_confidence	5	5	16	0.354485	3.139572	chr16	30875869	30876035	SINE|MIR|MIRc	-	chr16	30875911	30895220	MIR762HG|ENST00000565573.1	+	30875911,30888713,30894547	30876118,30888958,30895220	0.812500
cardiac_muscle_cell	chr2	3536862	3536887	3536872	-	High_confidence	4	4	15	0.332329	3.189898	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	1.000000
cardiac_muscle_cell	chr2	187513652	187513653	187513652	-	High_confidence	9	9	13	0.288019	3.180833	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	0.846154
cardiac_muscle_cell	chr12	95003338	95003358	95003357	-	High_confidence	2	3	6	0.132932	2.584963	chr12	95003195	95003316	SINE|MIR|MIR3	-	chr12	94971332	95003608	NDUFA12|ENST00000551991.5	-	94971332,94994169,94996903,95002738,95003594	94971620,94994257,94996976,95002821,95003608	1.000000
cardiac_muscle_cell	chr2	174410019	174410108	174410019	+	High_confidence	74	77	433	9.593239	6.265410	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410036	174428859	SCRN3|ENST00000548921.5	+	174410036,174422884,174424474,174427712	174410225,174423047,174424649,174428859	0.517321
cardiac_muscle_cell	chr5	34918370	34918371	34918370	+	RAMPAGE_only	7	7	9	0.199398	2.725481	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	0.888889
cardiac_muscle_cell	chr2	218398232	218398233	218398232	+	High_confidence	29	29	39	0.864056	4.540402	chr2	218398216	218398343	SINE|MIR|MIRb	+	chr2	218398255	218404418	CTDSP1|ENST00000491064.5	+	218398255,218401563,218402113,218402348,218403034,218403231,218404296	218398332,218401712,218402215,218402405,218403127,218403417,218404418	0.820513
cardiac_muscle_cell	chr6	17856034	17856035	17856034	-	RAMPAGE_only	6	7	8	0.177242	2.500000	chr6	17855745	17856010	SINE|Alu|AluJo	-	chr6	17759182	17987463	KIF13A|ENST00000378814.9	-	17759182,17764154,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571,17796668,17799265,17799951,17804360,17805474,17808767,17817019,17825767,17826037,17828239,17831100,17833960,17836877,17837471,17849376,17850322,17851954,17855436,17856029,17873376,17898167,17987053,17987408	17760877,17764946,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794704,17796820,17799439,17800113,17804510,17805615,17808930,17817233,17825934,17826124,17828370,17831235,17834071,17837090,17837583,17849489,17850457,17852042,17855617,17856122,17873437,17898180,17987144,17987463	0.875000
cardiac_muscle_cell	chr7	101308269	101308325	101308316	+	High_confidence	28	36	155	3.434070	6.034025	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.903226
cardiac_muscle_cell	chr4	173369589	173369617	173369601	-	High_confidence	4	5	18	0.398795	2.969389	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.500000
cardiac_muscle_cell	chr4	75127183	75127272	75127193	-	RAMPAGE_only	21	24	96	2.126908	4.771722	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.968750
cardiac_muscle_cell	chr19	45862581	45862625	45862581	-	High_confidence	3	3	16	0.354485	2.780639	chr19	45862393	45862941	LINE|L2|L2b	-	chr19	45848829	45863194	SYMPK|ENST00000594293.5	-	45848829,45852311,45852481,45854174,45854390,45861899,45863057	45848876,45852385,45852535,45854240,45854507,45862027,45863194	0.625000
cardiac_muscle_cell	chr6	77369029	77369032	77369031	-	High_confidence	53	82	102	2.259839	5.644314	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77273025	77369158	MSTRG.31326.1	-	77273025,77316635,77350621,77368885	77273307,77316704,77350734,77369158	0.607843
cardiac_muscle_cell	chr22	42519287	42519288	42519287	+	RAMPAGE_only	6	6	9	0.199398	2.500000	chr22	42519127	42519409	LINE|L2|L2c	-	chr22	42553616	42558412	SERHL2|ENST00000447870.6	+	42553616,42554937,42555231,42555663,42556063,42556513,42558347	42553713,42555087,42555345,42555705,42556083,42556588,42558412	0.777778
cardiac_muscle_cell	chr2	179124731	179124740	179124739	-	High_confidence	8	9	14	0.310174	3.039149	chr2	179124713	179125532	LINE|L2|L2a	+	chr2	179109321	179124467	SESTD1|ENST00000446758.5	-	179109321,179112723,179115064,179116573,179117531,179121769,179123714,179124363	179110028,179112845,179115256,179116790,179117613,179121929,179123829,179124467	1.000000
cardiac_muscle_cell	chr8	83978484	83978519	83978517	+	RAMPAGE_only	5	7	18	0.398795	3.461320	chr8	83978365	83978955	LINE|L1|L1MC3	+	chr8	83912712	83987583	MSTRG.35074.4	+	83912712,83967327,83974632,83978571,83979924	83912835,83974590,83976926,83978766,83987583	0.555556
cardiac_muscle_cell	chr19	9140393	9140428	9140427	+	High_confidence	89	90	293	6.491499	6.763860	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.655290
cardiac_muscle_cell	chr3	194486517	194486536	194486517	-	High_confidence	3	3	8	0.177242	2.500000	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194403464	194486659	MSTRG.26552.9	-	194403464,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194486659	1.000000
cardiac_muscle_cell	chr17	29667410	29667465	29667414	-	RAMPAGE_only	8	10	43	0.952677	4.850570	chr17	29667384	29667678	DNA|hAT-Charlie|MER1B	+	chr17	29630799	29761417	SSH2|ENST00000649863.1	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677738,29684684,29695523,29703062,29761417	0.860465
cardiac_muscle_cell	chr11	44695212	44695261	44695212	-	RAMPAGE_only	43	44	145	3.212517	5.852321	chr11	44695126	44695254	LINE|L1|L1ME3F	-	chr11	44694862	44696301	AC104241.2|ENST00000532748.1	-	44694862,44696220	44695570,44696301	0.772414
cardiac_muscle_cell	chr14	93183682	93183714	93183713	-	RAMPAGE_only	4	4	12	0.265863	2.855389	chr14	93183223	93184271	LTR|Gypsy|MamGyp-int	-	chr14	93182195	93184904	MOAP1|NM_022151.4	-	93182195,93184558,93184809	93184362,93184713,93184904	1.000000
cardiac_muscle_cell	chr1	151450948	151450949	151450948	-	RAMPAGE_only	4	4	7	0.155087	2.584963	chr1	151450922	151451133	SINE|Alu|AluSz	+	chr1	151402723	151459178	POGZ|ENST00000358476.7	-	151402723,151406606,151407234,151408099,151408408,151408693,151411624,151412295,151423396,151423948,151424954,151427822,151428122,151429602,151430665,151442080,151459151	151406464,151407023,151407291,151408240,151408581,151408828,151411771,151412396,151423551,151424286,151425061,151428041,151428413,151429711,151430841,151442205,151459178	0.714286
cardiac_muscle_cell	chr2	162664627	162664650	162664627	-	High_confidence	3	3	12	0.265863	3.277613	chr2	162664363	162664586	SINE|MIR|MIRb	-	chr2	162631719	162665325	MSTRG.21329.1	-	162631719,162653424	162642801,162665325	0.916667
cardiac_muscle_cell	chr2	182030851	182030862	182030861	+	High_confidence	9	9	21	0.465261	3.921928	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.714286
cardiac_muscle_cell	chr11	102374681	102374708	102374707	+	RAMPAGE_only	3	5	13	0.288019	2.522055	chr11	102369166	102375192	LINE|L1|L1PA2	-	chr11	102347373	102378663	BIRC2|ENST00000613397.4	+	102347373,102348597,102350843,102362895,102363667,102368305,102377495,102377856,102377989	102347845,102350749,102350943,102362974,102363716,102368548,102377750,102377898,102378663	0.923077
cardiac_muscle_cell	chr12	32834221	32834240	32834221	-	RAMPAGE_only	31	31	60	1.329317	5.150747	chr12	32834048	32834260	LINE|L2|L2c	+	chr12	32821466	32824405	PKP2|ENST00000546498.1	-	32821466,32822466,32824044	32821529,32822631,32824405	0.550000
cardiac_muscle_cell	chr3	36925060	36925086	36925067	-	RAMPAGE_only	6	8	27	0.598193	4.356558	chr3	36923610	36925588	LTR|ERV1|MER83A-int	+	chr3	36826825	36944861	TRANK1|ENST00000646897.1	-	36826825,36829563,36830872,36834761,36838371,36838612,36842621,36846247,36847199,36850153,36851718,36852145,36855172,36858717,36860905,36864318,36874125,36889828,36892201,36892900,36895639,36899108,36903148,36908322,36929314,36944786	36828375,36829662,36833919,36834907,36838504,36838716,36842710,36846404,36847346,36851417,36851856,36852345,36858049,36858894,36861160,36864480,36874296,36889960,36892340,36892984,36895758,36899259,36903275,36908454,36929415,36944861	0.814815
cardiac_muscle_cell	chr4	64311018	64311145	64311018	-	RAMPAGE_only	10	11	129	2.858032	5.319931	chr4	64310733	64311018	SINE|Alu|AluJb	-	chr4	64278458	64409398	MSTRG.27289.3	-	64278458,64281473,64289709,64299973,64305165,64309825,64322688,64328511,64375171,64409117	64281086,64281559,64289767,64300017,64305238,64314763,64322792,64328556,64375223,64409398	0.976744
cardiac_muscle_cell	chr4	79086113	79086144	79086141	+	High_confidence	6	6	20	0.443106	3.984184	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.700000
cardiac_muscle_cell	chr1	114705820	114705849	114705838	-	RAMPAGE_only	6	6	18	0.398795	3.392147	chr1	114705629	114705788	SINE|Alu|AluSx3	-	chr1	114704463	114716894	NRAS|NM_002524.4	-	114704463,114708153,114708530,114709568,114713799,114716049,114716657	114708050,114708192,114708654,114709728,114713978,114716177,114716894	1.000000
cardiac_muscle_cell	chr12	122218276	122218289	122218276	-	High_confidence	4	4	10	0.221553	2.725481	chr12	122218031	122218232	DNA|hAT-Charlie|MER58A	-	chr12	122208315	122218289	DIABLO|ENST00000439489.6	-	122208315,122209696,122216487,122216758,122218265	122208577,122209858,122216584,122216869,122218289	0.800000
cardiac_muscle_cell	chr19	45524115	45524131	45524130	+	RAMPAGE_only	5	7	13	0.288019	2.855389	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.692308
cardiac_muscle_cell	chr11	86938472	86938485	86938474	-	RAMPAGE_only	43	70	105	2.326305	5.741493	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86892213	86922104	AP001528.2|ENST00000528660.1	-	86892213,86896412,86921235	86892372,86896540,86922104	0.885714
cardiac_muscle_cell	chr1	75376210	75376316	75376315	-	RAMPAGE_only	90	93	466	10.324364	6.462234	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.753219
cardiac_muscle_cell	chr15	52548963	52549023	52549001	-	RAMPAGE_only	3	3	15	0.332329	3.640224	chr15	52548772	52548988	DNA|TcMar-Tigger|MamRep434	-	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	1.000000
cardiac_muscle_cell	chr3	179325287	179325317	179325296	+	High_confidence	3	3	10	0.221553	2.646439	chr3	179325011	179325319	SINE|Alu|AluSp	-	chr3	179325152	179333829	ZNF639|ENST00000466264.5	+	179325152,179327560,179328282,179329617,179332988,179333268	179325322,179327631,179328351,179329728,179333123,179333829	0.900000
cardiac_muscle_cell	chr15	24995063	24995087	24995063	+	RAMPAGE_only	2	3	8	0.177242	2.750000	chr15	24995035	24995326	SINE|Alu|AluSx4	+	chr15	24981993	25002830	MSTRG.11662.20	+	24981993,24998969,25000244,25001357,25002724	24998486,24999078,25000374,25001713,25002830	1.000000
cardiac_muscle_cell	chr7	39013161	39013167	39013166	+	High_confidence	27	27	54	1.196386	4.763966	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.500000
cardiac_muscle_cell	chr6	34219370	34219371	34219370	+	High_confidence	23	25	33	0.731124	2.931808	chr6	34219234	34219371	SINE|Alu|AluSx	+	chr6	34219438	34220066	CYCSP55|ENST00000399027.3	+	34219438,34220022	34219705,34220066	0.757576
cardiac_muscle_cell	chr5	55982777	55982800	55982799	-	High_confidence	4	4	15	0.332329	3.521641	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.933333
cardiac_muscle_cell	chr1	72899142	72899154	72899153	-	High_confidence	10	10	16	0.354485	3.625000	chr1	72898768	72900480	LINE|L1|L1PA2	+	chr1	72748920	72899140	AL583808.1|ENST00000445976.1	-	72748920,72749165,72850749,72898766,72899028	72749028,72749276,72850800,72898883,72899140	0.687500
cardiac_muscle_cell	chr2	172597129	172597170	172597129	+	RAMPAGE_only	11	14	36	0.797590	4.252715	chr2	172597096	172597405	SINE|Alu|AluJo	-	chr2	172556101	172608669	MSTRG.21431.12	+	172556101,172558707,172562219,172564502,172564977,172566855,172568740,172570725,172586277,172592934,172595828,172599418	172556346,172558849,172562291,172564687,172565073,172566933,172568817,172570824,172586388,172593048,172599052,172608669	1.000000
cardiac_muscle_cell	chr12	122064308	122064376	122064332	+	RAMPAGE_only	66	66	279	6.181325	6.549852	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.512545
cardiac_muscle_cell	chr3	187073849	187073850	187073849	+	RAMPAGE_only	11	11	16	0.354485	3.500000	chr3	187073802	187073876	SINE|MIR|MIR3	+	chr3	187071973	187078551	ST6GAL1|ENST00000470633.1	+	187071973,187073404,187075561	187072947,187074333,187078551	1.000000
cardiac_muscle_cell	chr20	8600725	8600749	8600738	+	High_confidence	11	11	42	0.930522	4.171928	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600725	8788523	PLCB1|ENST00000626966.2	+	8600725,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8600781,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788523	0.738095
cardiac_muscle_cell	chr20	56367530	56367575	56367530	+	RAMPAGE_only	5	8	29	0.642503	3.838804	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	0.965517
cardiac_muscle_cell	chr1	149229360	149229401	149229367	-	RAMPAGE_only	32	36	119	2.636479	4.880135	chr1	149229335	149229457	SINE|MIR|MIR3	+	chr1	149190349	149285838	MSTRG.2304.2	-	149190349,149197995,149198360,149201013,149240376,149261639,149266968,149285453	149190531,149198171,149198484,149201090,149240487,149261791,149267024,149285838	0.957983
cardiac_muscle_cell	chr10	55900027	55900141	55900058	-	High_confidence	35	37	245	5.428045	6.805712	chr10	55899641	55905708	LINE|L1|L1PA3	+	chr10	55773228	55900136	MSTRG.4180.1	-	55773228,55799761,55899633	55773507,55799882,55900136	0.518367
cardiac_muscle_cell	chr3	194486571	194486632	194486631	-	High_confidence	8	10	57	1.262851	4.178777	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194403464	194486659	MSTRG.26552.9	-	194403464,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194486659	0.982456
cardiac_muscle_cell	chr14	58424016	58424055	58424016	-	RAMPAGE_only	3	3	12	0.265863	3.251629	chr14	58423952	58424081	LINE|CR1|L3	-	chr14	58408663	58427114	TIMM9|ENST00000556007.6	-	58408663,58410842,58411906,58424007,58427053	58409099,58410938,58411971,58424095,58427114	0.833333
cardiac_muscle_cell	chr2	178610604	178610620	178610604	-	RAMPAGE_only	2	2	10	0.221553	2.725481	chr2	178610474	178610633	DNA|hAT-Charlie|MER20B	-	chr2	178525988	178651516	MSTRG.21674.1	-	178525988,178527445,178528273,178528527,178529959,178530240,178531875,178535981,178536937,178537341,178538539,178538945,178539381,178540067,178541281,178542263,178542661,178543068,178543833,178544200,178545387,178545819,178546211,178546599,178547002,178547406,178549569,178549985,178550966,178551629,178552951,178553501,178553913,178554452,178554864,178556847,178557252,178557647,178558340,178559310,178576528,178576922,178577601,178577987,178578610,178578805,178579560,178579938,178580321,178581498,178581905,178582295,178582939,178583606,178584275,178584668,178585071,178586504,178587117,178587515,178587898,178588537,178591598,178591977,178592378,178592774,178593172,178593567,178593960,178594343,178595506,178597537,178597907,178598505,178598747,178599145,178599553,178600853,178601264,178601657,178601881,178602001,178602281,178603875,178604707,178604986,178605413,178607020,178607400,178607784,178608177,178608605,178609207,178609683,178610089,178610992,178611371,178611757,178612056,178612276,178612772,178613160,178613750,178614051,178614465,178614846,178615306,178615640,178616478,178616728,178617119,178617324,178617778,178618188,178618583,178619620,178619987,178620216,178620714,178621101,178621474,178621839,178622669,178624464,178625272,178629300,178630240,178630803,178631033,178632146,178632525,178632917,178633186,178633412,178633816,178634365,178634722,178635164,178635439,178635962,178636397,178637368,178639698,178640047,178640540,178641240,178642236,178644547,178645919,178649816,178650163,178650750,178651242,178651452	178527307,178527748,178528427,178529219,178530116,178531810,178535849,178536575,178537243,178537917,178538839,178539251,178539966,178540370,178541584,178542563,178542949,178543662,178544115,178544506,178545693,178546116,178546502,178546905,178547305,178549473,178549869,178550273,178551260,178552899,178553396,178553807,178554216,178554752,178555152,178557144,178557555,178558235,178558637,178576416,178576831,178577510,178577898,178578185,178578715,178579393,178579848,178580229,178580609,178581804,178582208,178582592,178583227,178583906,178584578,178584968,178585347,178586807,178587417,178587800,178588219,178591504,178591892,178592277,178592660,178593083,178593475,178593867,178594242,178594646,178595809,178597819,178598058,178598654,178599062,178599445,178599850,178601171,178601564,178601787,178601914,178602150,178602590,178604305,178604898,178605295,178605713,178607314,178607685,178608081,178608477,178608908,178609570,178609986,178610389,178611271,178611677,178611954,178612162,178612576,178613072,178613276,178613937,178614348,178614753,178614968,178615484,178615788,178616630,178617013,178617234,178617512,178618081,178618491,178618853,178619887,178620112,178620625,178620993,178621368,178621741,178622008,178622767,178624731,178625396,178629443,178630367,178630943,178631300,178632413,178632792,178633044,178633326,178633676,178634083,178634629,178634849,178635304,178635715,178636241,178636799,178637419,178639788,178640110,178640630,178641315,178642317,178644616,178646030,178649894,178650271,178650834,178651320,178651516	0.800000
cardiac_muscle_cell	chr3	46815161	46815229	46815178	-	RAMPAGE_only	4	4	21	0.465261	2.965584	chr3	46813333	46815678	LTR|ERVL|HERVL-int	-	chr3	46712114	46855002	MSTRG.24954.1	-	46712114,46712900,46714217,46715534,46717436,46717718,46719943,46748624,46754487,46756041,46812221,46827785,46844137,46848516	46712482,46713067,46714501,46715697,46717637,46718306,46720003,46748651,46754648,46756629,46827765,46836203,46848467,46855002	0.904762
cardiac_muscle_cell	chr11	123060156	123060256	123060252	-	High_confidence	25	38	189	4.187349	5.236040	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.661376
cardiac_muscle_cell	chrX	32510392	32510393	32510392	-	RAMPAGE_only	17	21	21	0.465261	3.880180	chrX	32509835	32510599	LINE|L2|L2a	+	chrX	31119227	33128165	DMD|ENST00000619831.4	-	31119227,31126641,31134101,31146290,31147274,31169442,31172347,31173538,31177931,31178668,31180369,31182737,31203960,31206581,31209497,31223046,31260954,31323597,31348555,31444480,31478105,31478982,31496787,31507280,31627672,31657989,31679374,31729630,31773959,31819974,31836717,31875187,31929595,31932079,31968338,32151389,32216888,32216906,32287528,32310081,32342099,32343133,32345942,32348405,32362787,32364581,32365019,32380509,32386309,32389500,32390070,32411751,32438240,32441179,32448455,32454661,32463438,32464585,32468497,32472163,32484918,32491276,32501754,32518007,32545158,32565701,32573529,32573744,32595756,32614302,32644131,32644963,32697869,32699111,32809492,32816467,32823294,32844782,32849727,33020138,33128146	31121930,31126673,31134194,31146414,31147518,31169601,31172413,31173604,31177970,31178805,31180481,31182904,31204118,31206667,31209699,31223121,31261016,31323658,31348634,31444627,31478374,31479103,31496944,31507453,31627862,31658144,31679586,31729748,31774192,31820083,31836819,31875373,31929745,31932227,31968450,32151426,32216903,32217063,32287701,32310276,32342282,32343286,32346080,32348528,32362958,32364710,32365199,32380680,32386465,32389674,32390181,32411913,32438390,32441314,32448638,32454832,32463594,32464699,32468710,32472309,32485099,32491518,32501842,32518131,32545334,32565881,32573637,32573846,32595876,32614453,32644313,32645152,32697998,32699293,32809611,32816640,32823387,32844860,32849820,33020200,33128165	0.857143
cardiac_muscle_cell	chr22	32059151	32059180	32059169	+	High_confidence	11	12	28	0.620348	4.032303	chr22	32059153	32059234	SINE|Alu|AluSz6	+	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	0.750000
cardiac_muscle_cell	chr1	147173185	147173189	147173185	+	High_confidence	3	3	9	0.199398	2.725481	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.555556
cardiac_muscle_cell	chr9	110170650	110170703	110170650	+	RAMPAGE_only	4	4	27	0.598193	4.392747	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	0.962963
cardiac_muscle_cell	chr14	30690449	30690460	30690459	+	RAMPAGE_only	26	26	76	1.683802	5.374311	chr14	30684809	30690837	LINE|L1|L1HS	-	chr14	30676125	30705885	SCFD1|ENST00000554486.1	+	30676125,30694772,30700187,30702295,30705822	30676633,30694869,30700258,30702375,30705885	0.539474
cardiac_muscle_cell	chr20	37223242	37223272	37223242	+	RAMPAGE_only	6	6	23	0.509572	3.788755	chr20	37223287	37223521	SINE|MIR|MIR	+	chr20	37179160	37241619	RPN2|ENST00000373622.9	+	37179160,37184179,37199049,37203884,37204766,37207272,37210046,37213759,37223877,37225687,37228549,37229972,37232295,37234019,37236579,37238401,37241302	37179369,37184373,37199225,37203960,37204901,37207449,37210165,37213865,37223969,37225802,37228744,37230059,37232391,37234095,37236709,37238449,37241619	0.913043
cardiac_muscle_cell	chr19	47780106	47780108	47780107	+	High_confidence	193	246	319	7.067537	5.912499	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.918495
cardiac_muscle_cell	chr4	48255295	48255318	48255302	-	RAMPAGE_only	6	6	16	0.354485	3.906891	chr4	48255094	48255505	LTR|ERVL-MaLR|MLT1K	-	chr4	48135782	48269797	TEC|NM_003215.2	-	48135782,48138664,48138903,48141354,48145078,48145407,48146324,48149556,48150862,48156679,48163701,48167777,48168585,48170247,48171367,48176081,48228476,48269751	48137499,48138822,48139022,48141419,48145295,48145579,48146399,48149690,48150942,48156734,48163767,48167953,48168626,48170376,48171449,48176186,48228659,48269797	0.750000
cardiac_muscle_cell	chr16	21979367	21979376	21979375	+	RAMPAGE_only	5	5	9	0.199398	2.947703	chr16	21979345	21979895	DNA|TcMar-Tigger|Tigger3c	-	chr16	21953402	21983347	MSTRG.13607.8	+	21953402,21957234,21957416,21958534,21962459,21962760,21965407,21968627,21971524,21971922,21973895,21976166,21983087	21953456,21957318,21957566,21958599,21962516,21962885,21965505,21968685,21971620,21972122,21973976,21980700,21983347	1.000000
cardiac_muscle_cell	chrX	97310597	97310613	97310597	+	RAMPAGE_only	52	54	165	3.655622	5.755396	chrX	97310220	97310731	LINE|L2|L2a	-	chrX	96685016	97469765	DIAPH2|ENST00000373054.5	+	96685016,96735757,96738585,96758153,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348117,97383908,97429649,97469693	96685190,96735790,96738762,96758258,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247841,97348280,97384044,97429745,97469765	0.909091
cardiac_muscle_cell	chr1	201370001	201370049	201370048	-	RAMPAGE_only	8	9	25	0.553882	3.573661	chr1	201369918	201370169	SINE|MIR|MIRb	+	chr1	201359008	201373254	TNNT2|ENST00000236918.11	-	201359008,201359622,201361278,201361912,201362385,201363295,201364297,201365190,201365609,201366837,201367770,201368161,201369815,201372026,201372144,201373213	201359255,201359663,201361369,201362022,201362394,201363406,201364375,201365307,201365670,201366871,201367806,201368227,201369845,201372041,201372155,201373254	0.520000
cardiac_muscle_cell	chr1	154975524	154975552	154975545	+	High_confidence	23	24	100	2.215529	4.726069	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975538	154978916	CKS1B|ENST00000473344.1	+	154975538,154977986,154978724	154975608,154978114,154978916	0.730000
cardiac_muscle_cell	chr2	68679667	68679687	68679683	+	High_confidence	5	5	18	0.398795	3.794653	chr2	68677861	68680074	LINE|L1|L1PA3	-	chr2	68679845	68787922	ARHGAP25|ENST00000481684.5	+	68679845,68710504,68757637,68775220,68782232,68787839	68680095,68710698,68757730,68775420,68782320,68787922	0.666667
cardiac_muscle_cell	chr1	33031619	33031620	33031619	-	RAMPAGE_only	15	16	18	0.398795	3.175123	chr1	33031545	33031766	SINE|MIR|MIRb	+	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.722222
cardiac_muscle_cell	chr12	4509376	4509405	4509384	-	RAMPAGE_only	7	7	23	0.509572	3.969002	chr12	4508895	4514901	LINE|L1|L1PA2	+	chr12	4487727	4538471	C12orf4|ENST00000261250.7	-	4487727,4490521,4491176,4500137,4505305,4517060,4518057,4518773,4525253,4525483,4529868,4534156,4536016,4538408	4489899,4490589,4491234,4500340,4505380,4517189,4518255,4518880,4525375,4525583,4530050,4534302,4536219,4538471	0.695652
cardiac_muscle_cell	chr5	171888359	171888360	171888359	-	RAMPAGE_only	42	45	60	1.329317	5.014834	chr5	171887957	171889163	LINE|L1|L1MEf	+	chr5	171861551	172006640	FBXW11|ENST00000265094.9	-	171861551,171868609,171869728,171870747,171872871,171876284,171878010,171891466,171899003,171899913,171910571,171957596,172006457	171864101,171868796,171869807,171870858,171872990,171876534,171878129,171891604,171899094,171900100,171910797,171957698,172006640	0.683333
cardiac_muscle_cell	chr4	2867835	2867879	2867850	+	High_confidence	7	7	22	0.487416	3.629220	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
cardiac_muscle_cell	chr5	90929166	90929271	90929166	+	High_confidence	29	30	123	2.725100	5.849802	chr5	90923630	90929658	LINE|L1|L1PA2	-	chr5	90929526	91072579	ADGRV1|ENST00000639707.1	+	90929526,90965414,90985343,91072446	90929661,90965531,90985522,91072579	0.528455
cardiac_muscle_cell	chr12	8788492	8788493	8788492	+	High_confidence	5	5	8	0.177242	2.521641	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788273	8795789	AC092490.1|ENST00000514568.2	+	8788273,8794304	8788760,8795789	0.625000
cardiac_muscle_cell	chr2	10844198	10844257	10844241	+	RAMPAGE_only	14	14	49	1.085609	4.645123	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10878266	10885118	LOC101929733|NR_110575.1	+	10878266,10884833	10878444,10885118	0.653061
cardiac_muscle_cell	chr11	64242611	64242620	64242619	+	High_confidence	24	25	49	1.085609	4.392785	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
cardiac_muscle_cell	chr8	144427932	144427967	144427932	+	High_confidence	16	19	68	1.506560	4.973621	chr8	144427788	144427946	LINE|L2|L2	-	chr8	144427912	144441534	MSTRG.35694.1	+	144427912,144436750,144437648,144438227,144438676,144439827	144429712,144436995,144437746,144438333,144438782,144441534	0.882353
cardiac_muscle_cell	chr4	3930059	3930072	3930059	-	RAMPAGE_only	5	7	17	0.376640	3.263933	chr4	3927854	3930775	LTR|ERV1|HERVH-int	+	chr4	3915186	3924274	AC226119.2|ENST00000513501.1	-	3915186,3917820,3921623,3924070	3915272,3917901,3921782,3924274	1.000000
cardiac_muscle_cell	chr10	71219472	71219473	71219472	-	High_confidence	352	366	464	10.280053	6.189951	chr10	71219245	71219680	LTR|ERVL|MLT2A1	-	chr10	71217223	71219471	MSTRG.4322.2	-	71217223,71217993,71219319	71217635,71219081,71219471	0.967672
cardiac_muscle_cell	chr11	47351783	47351848	47351783	-	High_confidence	53	53	227	5.029250	6.594997	chr11	47351577	47351776	SINE|MIR|MIRb	-	chr11	47331396	47352702	MYBPC3|ENST00000545968.5	-	47331396,47331844,47332071,47332565,47332813,47333193,47333556,47333921,47335041,47335876,47337390,47337689,47338519,47339323,47339650,47341002,47341137,47341990,47342577,47342829,47343020,47343259,47343491,47346206,47346626,47347026,47347425,47347650,47347856,47348423,47349773,47350013,47350501,47351238,47352622	47331716,47331881,47332258,47332702,47332973,47333333,47333752,47334010,47335209,47336011,47337579,47337794,47338679,47339404,47339790,47341032,47341244,47342156,47342744,47342935,47343145,47343262,47343624,47346370,47346644,47347029,47347479,47347680,47347905,47348541,47349922,47350112,47350615,47351505,47352702	0.797357
cardiac_muscle_cell	chr19	10681306	10681329	10681328	+	RAMPAGE_only	6	6	12	0.265863	2.855389	chr19	10681334	10681610	SINE|Alu|AluJb	+	chr19	10654303	10689847	ILF3|ENST00000587928.5	+	10654303,10670515,10670973,10671357,10677162,10678612,10679096,10679815,10680345,10681018,10681218,10682536,10683124,10683365,10683635,10683916,10684415,10687345,10688549,10689178	10654487,10670608,10671203,10671535,10677310,10678704,10679192,10679927,10680443,10681130,10682192,10682704,10683262,10683542,10683789,10683970,10684476,10687708,10688678,10689847	1.000000
cardiac_muscle_cell	chr11	72111432	72111437	72111432	-	High_confidence	4	4	10	0.221553	2.725481	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.700000
cardiac_muscle_cell	chr2	40453196	40453241	40453196	-	RAMPAGE_only	3	3	19	0.420950	3.826875	chr2	40453124	40453283	DNA|hAT-Charlie|MER5A	-	chr2	40097269	40452069	SLC8A1|ENST00000406785.6	-	40097269,40139400,40160764,40164853,40174824,40177751,40428472,40451903	40115629,40139676,40160864,40164984,40174842,40177855,40430304,40452069	0.526316
cardiac_muscle_cell	chr18	46087018	46087169	46087042	-	High_confidence	23	24	231	5.117871	6.186766	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.584416
cardiac_muscle_cell	chr5	1863770	1863771	1863770	-	RAMPAGE_only	11	11	11	0.243708	2.845351	chr5	1863665	1864152	LTR|ERV1|MER50	-	chr5	1855969	1856568	LINC02116|ENST00000509455.1	-	1855969,1856402	1856296,1856568	0.545455
cardiac_muscle_cell	chr7	40742599	40742612	40742611	+	High_confidence	733	736	2121	46.991364	6.625043	chr7	40742340	40742651	DNA|hAT-Charlie|MER1B	-	chr7	40742493	40860631	MSTRG.32830.8	+	40742493,40749433,40860315	40742692,40749497,40860631	0.827440
cardiac_muscle_cell	chr1	156752174	156752255	156752197	-	High_confidence	14	14	90	1.993976	5.708194	chr1	156752098	156752165	LINE|L2|L2c	-	chr1	156742106	156752232	HDGF|NM_001126051.1	-	156742106,156743651,156744162,156745007,156745296,156752037	156743455,156743878,156744348,156745146,156745373,156752232	1.000000
cardiac_muscle_cell	chr1	147517874	147517875	147517874	-	High_confidence	63	72	72	1.595181	5.169921	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147382191	147517875	LINC00624|NR_038423.2	-	147382191,147514337,147515520,147517442	147384863,147514448,147515676,147517875	0.875000
cardiac_muscle_cell	chr22	50783214	50783227	50783214	+	High_confidence	5	5	10	0.221553	2.503258	chr22	50783102	50783247	SINE|Alu|AluJr	-	chr22	50783253	50799305	RPL23AP82|ENST00000467796.5	+	50783253,50785172,50798654	50783294,50785293,50799305	0.900000
cardiac_muscle_cell	chr2	163121645	163121735	163121682	+	High_confidence	2587	2624	16186	358.605478	6.919524	chr2	163121522	163122034	LINE|L1|L1ME2	-	chr2	163121574	163124952	MSTRG.21335.3	+	163121574,163121793,163124118	163121679,163121927,163124952	0.968738
cardiac_muscle_cell	chr3	195088048	195088071	195088048	-	RAMPAGE_only	7	7	21	0.465261	3.616349	chr3	195087672	195093677	LINE|L1|L1PA2	+	chr3	195068600	195184798	XXYLT1|ENST00000437101.5	-	195068600,195156448,195175630,195180390,195184633	195070111,195156581,195175853,195180507,195184798	0.857143
cardiac_muscle_cell	chr5	96934331	96934397	96934357	+	RAMPAGE_only	12	14	53	1.174230	5.104910	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.943396
cardiac_muscle_cell	chr16	82139734	82139744	82139734	-	High_confidence	7	10	19	0.420950	3.826875	chr16	82139255	82145258	LINE|L1|L1PA2	+	chr16	82044370	82139631	AC092142.1|ENST00000567021.1	-	82044370,82063092,82070802,82139588	82044608,82063253,82071189,82139631	0.578947
cardiac_muscle_cell	chr13	20140042	20140067	20140066	-	RAMPAGE_only	2	2	8	0.177242	2.521641	chr13	20140031	20140160	DNA|hAT-Charlie|MER105	+	chr13	20138254	20161044	GJA3|NM_021954.3	-	20138254,20160889	20143305,20161044	0.875000
cardiac_muscle_cell	chr8	12524333	12524373	12524372	+	RAMPAGE_only	5	5	21	0.465261	3.164963	chr8	12523603	12525944	LTR|ERV1|HERVS71-int	-	chr8	12437143	12566779	MSTRG.34389.1	+	12437143,12438163,12440968,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566779	0.809524
cardiac_muscle_cell	chr20	33441308	33441338	33441308	-	RAMPAGE_only	3	3	13	0.288019	3.392747	chr20	33441089	33441319	SINE|MIR|MIR	-	chr20	33407954	33443892	SNTA1|ENST00000217381.2	-	33407954,33408700,33410134,33412295,33412574,33417718,33438840,33443310	33408599,33408888,33410331,33412426,33412782,33417923,33439026,33443892	0.769231
cardiac_muscle_cell	chr7	19194696	19194697	19194696	+	RAMPAGE_only	4	4	6	0.132932	2.584963	chr7	19189041	19195047	LINE|L1|L1PA2	-	chr7	19353533	19578606	AC007091.1|ENST00000412563.1	+	19353533,19354739,19403700,19405331,19576286,19578528	19353641,19354885,19403763,19405370,19576418,19578606	0.666667
cardiac_muscle_cell	chr12	50767070	50767071	50767070	+	RAMPAGE_only	8	8	8	0.177242	3.000000	chr12	50766664	50767224	LTR|ERV1|MER41-int	+	chr12	50764508	50814368	ATF1|ENST00000552487.1	+	50764508,50780139,50795908,50809455,50814009,50814279	50764647,50780238,50796009,50809589,50814192,50814368	0.750000
cardiac_muscle_cell	chr7	107580245	107580267	107580245	+	High_confidence	1621	1634	7574	167.804145	7.674847	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.847901
cardiac_muscle_cell	chr12	81512312	81512318	81512312	-	High_confidence	7	7	16	0.354485	3.506891	chr12	81512110	81512385	LINE|L2|L2	+	chr12	81259435	81512362	PPFIA2|ENST00000550359.6	-	81259435,81261948,81263230,81266951,81267911,81277316,81281256,81283009,81284240,81294834,81299300,81325776,81339179,81341077,81344663,81347532,81353118,81358081,81362692,81367107,81368724,81369110,81374633,81375795,81384022,81405786,81439971,81445555,81457764,81512283	81259660,81262040,81263390,81267020,81268087,81277414,81281450,81283039,81284303,81295035,81299382,81325870,81339334,81341208,81344693,81347770,81353339,81358217,81362784,81367170,81368856,81369194,81374768,81375942,81384244,81405903,81440046,81445720,81457866,81512362	0.500000
cardiac_muscle_cell	chr6	2768862	2768872	2768870	+	High_confidence	3	5	10	0.221553	2.503258	chr6	2768884	2768965	SINE|MIR|MIRc	+	chr6	2768772	2785745	WRNIP1|ENST00000380764.1	+	2768772,2770119,2779262,2783405,2784323,2785006	2768882,2770361,2779492,2783561,2784403,2785745	0.900000
cardiac_muscle_cell	chr5	172958855	172958919	172958918	+	High_confidence	61	62	211	4.674766	5.067667	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.971564
cardiac_muscle_cell	chr22	41653650	41653668	41653667	+	RAMPAGE_only	5	8	17	0.376640	3.410417	chr22	41653710	41653849	DNA|hAT-Charlie|MER5A	+	chr22	41656952	41661699	XRCC6|ENST00000478914.1	+	41656952,41658251,41661330	41657032,41658352,41661699	0.529412
cardiac_muscle_cell	chr22	36481305	36481353	36481305	-	High_confidence	6	6	28	0.620348	3.851823	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.714286
cardiac_muscle_cell	chr1	68881419	68881430	68881419	+	High_confidence	10	11	17	0.376640	3.219528	chr1	68875777	68881805	LINE|L1|L1PA2	-	chr1	68881576	68943452	AL033530.1|ENST00000646995.1	+	68881576,68942580	68882003,68943452	0.941176
cardiac_muscle_cell	chr13	29647353	29647361	29647360	+	High_confidence	7	7	13	0.288019	3.238901	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.769231
cardiac_muscle_cell	chr7	87039792	87039870	87039869	-	High_confidence	30	31	221	4.896318	6.815912	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86911824	87040221	MSTRG.33266.9	-	86911824,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040221	0.900452
cardiac_muscle_cell	chr7	6590246	6590300	6590246	+	High_confidence	3	3	45	0.996988	4.474643	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.977778
cardiac_muscle_cell	chr7	92244937	92244950	92244949	-	High_confidence	6	6	10	0.221553	2.947703	chr7	92244870	92245026	DNA|hAT-Charlie|MER20B	+	chr7	92200357	92245795	KRIT1|ENST00000412043.6	-	92200357,92201306,92213194,92213891,92214610,92221901,92222821,92225719,92226525,92234448,92234807,92235402,92236412,92237666,92240992,92242033,92244001,92244901,92245426	92200804,92201423,92213401,92213979,92214777,92222053,92222978,92225827,92226682,92234592,92234923,92235646,92236542,92237759,92241152,92242137,92244149,92245171,92245795	0.600000
cardiac_muscle_cell	chr17	1115408	1115420	1115408	-	High_confidence	7	7	23	0.509572	3.308751	chr17	1115307	1115433	LINE|L2|L2b	+	chr17	1072732	1115436	ABR|ENST00000570441.5	-	1072732,1073624,1079329,1083519,1091664,1100636,1115275	1072754,1073677,1079390,1083627,1091850,1100735,1115436	0.826087
cardiac_muscle_cell	chr11	72111494	72111497	72111496	-	High_confidence	5	8	10	0.221553	3.321928	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72108817	72111497	ANAPC15|ENST00000538117.5	-	72108817,72109228,72110087,72110543,72111156,72111411	72108875,72109341,72110225,72110603,72111281,72111497	0.600000
cardiac_muscle_cell	chr7	33527266	33527283	33527266	+	RAMPAGE_only	2	2	11	0.243708	2.921928	chr7	33521747	33527773	LINE|L1|L1PA2	-	chr7	33533686	33605207	BBS9|ENST00000498189.1	+	33533686,33604864,33605194	33534176,33604975,33605207	0.545455
cardiac_muscle_cell	chr8	98045644	98045676	98045659	+	High_confidence	15	15	101	2.237684	5.538563	chr8	98045692	98046014	SINE|Alu|AluJb	+	chr8	98045662	98047342	MSTRG.35249.1	+	98045662	98047342	0.990099
cardiac_muscle_cell	chr14	34462751	34462772	34462771	-	High_confidence	8	10	14	0.310174	2.699514	chr14	34462624	34462760	LINE|L2|L2a	-	chr14	33985380	34462774	EGLN3|ENST00000551935.5	-	33985380,33987011,34092320,34169490,34462715	33985507,33987162,34092402,34169646,34462774	0.571429
cardiac_muscle_cell	chr11	112176365	112176373	112176365	+	High_confidence	354	381	664	14.711111	7.095902	chr11	112176309	112176508	LINE|L2|L2c	-	chr11	112176365	112218929	BCO2|NM_001256397.1	+	112176365,112179277,112193473,112193878,112194652,112199698,112200612,112202022,112213723,112214761,112216219,112217760	112176458,112179482,112193697,112193994,112194755,112199827,112200773,112202190,112213861,112214926,112216330,112218929	0.775602
cardiac_muscle_cell	chr12	31119083	31119089	31119088	-	High_confidence	6	8	13	0.288019	3.251629	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.769231
cardiac_muscle_cell	chr7	117387536	117387602	117387601	-	RAMPAGE_only	8	8	23	0.509572	3.732159	chr7	117387484	117387772	LINE|L2|L2	+	chr7	117363307	117427498	ASZ1|ENST00000463182.5	-	117363307,117367351,117379937,117381010,117382068,117382985,117384725,117385697,117420162,117422236,117426835,117427355	117363748,117368717,117380047,117381067,117382144,117383110,117384860,117385809,117420274,117422359,117426935,117427498	0.956522
cardiac_muscle_cell	chr17	5419853	5419882	5419881	+	High_confidence	7	7	22	0.487416	3.732159	chr17	5419928	5419992	LINE|L2|L2	+	chr17	5419887	5432608	RPAIN|ENST00000327154.10	+	5419887,5421295,5422768,5425970,5432541	5420291,5421466,5422829,5426082,5432608	0.636364
cardiac_muscle_cell	chr15	81798422	81798423	81798422	-	High_confidence	12	12	14	0.310174	2.565448	chr15	81797930	81803963	LINE|L1|L1PA2	+	chr15	81660481	81798124	AC104041.1|ENST00000560054.5	-	81660481,81661999,81797923	81660710,81662138,81798124	0.785714
cardiac_muscle_cell	chr5	154287453	154287470	154287469	+	High_confidence	3	3	6	0.132932	2.584963	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	0.666667
cardiac_muscle_cell	chr1	23967454	23967497	23967454	-	RAMPAGE_only	2	2	12	0.265863	2.918296	chr1	23967371	23967536	LINE|CR1|X7B_LINE	-	chr1	23966444	23980296	SRSF10|ENST00000453840.7	-	23966444,23971572,23971849,23974973,23978712,23980190	23967723,23971623,23972012,23975077,23978817,23980296	1.000000
cardiac_muscle_cell	chr3	150572485	150572529	150572528	+	RAMPAGE_only	4	4	15	0.332329	3.506891	chr3	150572572	150572872	SINE|Alu|AluSz	+	chr3	150568031	150584234	EIF2A|ENST00000465535.1	+	150568031,150568175,150571957,150575648,150583199,150583845	150568046,150568292,150572529,150575762,150583265,150584234	0.666667
cardiac_muscle_cell	chr15	73515647	73515650	73515648	+	RAMPAGE_only	15	22	30	0.664659	4.375222	chr15	73515474	73515869	LTR|ERVL-MaLR|MLT1A	+	chr15	73443163	73560010	REC114|ENST00000560581.1	+	73443163,73473831,73550937,73556301,73559751	73443344,73473921,73551150,73556391,73560010	0.566667
cardiac_muscle_cell	chrX	131579064	131579170	131579122	-	High_confidence	79	87	504	11.166265	6.723306	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131361169	131579138	MSTRG.38469.9	-	131361169,131368951,131389016,131399573,131578667	131364926,131369052,131389148,131399704,131579138	0.640873
cardiac_muscle_cell	chr7	16347874	16347940	16347929	-	RAMPAGE_only	70	71	218	4.829853	6.229758	chr7	16347738	16351158	LINE|L1|L1M3de	+	chr7	16087526	16421322	ISPD|ENST00000407010.6	-	16087526,16216065,16258389,16258919,16278128,16301420,16308522,16376091,16406060,16421065	16091799,16216197,16258482,16259012,16278226,16301466,16308627,16376241,16406337,16421322	0.779817
cardiac_muscle_cell	chr5	79481773	79481791	79481790	-	RAMPAGE_only	10	11	18	0.398795	3.381580	chr5	79481262	79481938	LINE|L1|L1MEc	+	chr5	79375929	79512794	HOMER1|ENST00000282260.10	-	79375929,79396822,79397526,79450989,79456861,79512769	79376197,79396903,79397637,79451121,79457018,79512794	0.777778
cardiac_muscle_cell	chr5	140655880	140655989	140655988	+	RAMPAGE_only	14	15	143	3.168206	5.041719	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.993007
cardiac_muscle_cell	chr2	196906078	196906084	196906078	-	RAMPAGE_only	5	5	11	0.243708	2.663533	chr2	196905587	196911636	LINE|L1|L1HS	+	chr2	196835183	196926655	PGAP1|ENST00000423035.5	-	196835183,196842720,196843887,196844523,196845881,196847002,196847946,196864986,196870940,196872440,196872959,196873527,196873684,196875745,196880075,196885423,196885833,196890827,196892345,196893139,196897130,196898316,196902584,196912881,196916417,196919996,196922102,196926469	196841372,196842825,196844075,196844574,196846017,196847200,196848037,196865080,196870979,196872549,196873026,196873579,196873758,196875821,196880153,196885475,196885880,196890911,196892401,196893245,196897197,196898369,196902742,196913053,196916593,196920150,196922186,196926655	0.909091
cardiac_muscle_cell	chr3	100734300	100734308	100734307	+	RAMPAGE_only	6	6	10	0.221553	2.646439	chr3	100734224	100734464	LINE|L1|L1M4a1	-	chr3	100742475	100748963	TFG|ENST00000481203.1	+	100742475,100748148	100744931,100748963	0.500000
cardiac_muscle_cell	chr9	122858686	122858709	122858686	-	RAMPAGE_only	1	1	8	0.177242	2.807355	chr9	122858410	122858651	SINE|MIR|MIR	-	chr9	122853773	122855737	RC3H2|ENST00000398671.2	-	122853773,122854184,122854530,122855183,122855731	122854086,122854266,122854581,122855397,122855737	0.750000
cardiac_muscle_cell	chr12	121582258	121582286	121582285	-	RAMPAGE_only	6	6	18	0.398795	3.572469	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121429095	121581015	KDM2B|NM_032590.4	-	121429095,121439856,121440815,121441069,121442156,121442991,121443679,121444011,121444449,121445274,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549459,121574546,121575780,121578801,121580785	121430469,121440075,121440977,121441233,121442836,121443030,121443793,121444272,121444536,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548983,121549638,121574593,121575859,121578946,121581015	0.833333
cardiac_muscle_cell	chr4	13446762	13446812	13446796	-	RAMPAGE_only	3	3	17	0.376640	3.454822	chr4	13444849	13446816	LINE|L1|L1P3	-	chr4	13367723	13484331	RAB28|ENST00000508274.5	-	13367723,13376544,13381490,13474317,13479429,13484075	13368650,13376622,13381594,13474406,13479526,13484331	0.705882
cardiac_muscle_cell	chr5	109383462	109383464	109383462	-	High_confidence	2	4	7	0.155087	2.521641	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
cardiac_muscle_cell	chr13	42999599	42999655	42999599	+	RAMPAGE_only	12	13	78	1.728112	4.530278	chr13	42999404	43000000	LTR|ERVL|MER70B	+	chr13	43023202	43114224	DNAJC15|ENST00000379221.3	+	43023202,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43114224	0.974359
cardiac_muscle_cell	chr4	69986883	69986931	69986930	+	RAMPAGE_only	5	5	20	0.443106	3.721928	chr4	69986784	69986962	DNA|hAT-Charlie|MER5A	-	chr4	69995929	70002453	STATH|ENST00000246895.8	+	69995929,69998422,69999666,69999779,70000862,70002188	69996025,69998488,69999687,69999809,70000982,70002453	0.850000
cardiac_muscle_cell	chr19	3062922	3062983	3062982	-	High_confidence	40	47	217	4.807697	6.284233	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.990783
cardiac_muscle_cell	chr5	27475659	27475692	27475691	+	RAMPAGE_only	3	3	14	0.310174	3.182006	chr5	27472714	27477542	LTR|ERV1|MER61-int	+	chr5	27472306	27491077	MSTRG.28436.3	+	27472306,27475534,27484925	27472519,27477801,27491077	1.000000
cardiac_muscle_cell	chr2	74148413	74148440	74148413	+	High_confidence	3	3	13	0.288019	3.026987	chr2	74148357	74148636	LINE|L2|L2	-	chr2	74148044	74149988	BOLA3-AS1|ENST00000533563.1	+	74148044,74148349,74148697	74148223,74148478,74149988	0.846154
cardiac_muscle_cell	chr4	47801648	47801689	47801673	-	RAMPAGE_only	4	4	17	0.376640	3.292770	chr4	47801348	47803138	LINE|L1|L1M1	+	chr4	47595481	47790260	CORIN|ENST00000508498.5	-	47595481,47600213,47603396,47623570,47623898,47626404,47641919,47643145,47645080,47653552,47661710,47665031,47674392,47677937,47680140,47683730,47692969,47744401,47763378,47786724,47790220	47595903,47600347,47603668,47623745,47623948,47626521,47642049,47643256,47645194,47653660,47661856,47665263,47674500,47678054,47680251,47683838,47693083,47744583,47763586,47786925,47790260	0.588235
cardiac_muscle_cell	chr1	32221738	32221749	32221738	+	High_confidence	2	2	7	0.155087	2.807355	chr1	32221596	32221823	SINE|MIR|MIRb	-	chr1	32221583	32231604	EIF3I|NM_003757.3	+	32221583,32222357,32222537,32224033,32224409,32226170,32226402,32228498,32228726,32229134,32230926,32231114	32222032,32222444,32222630,32224121,32224475,32226320,32226530,32228609,32228816,32229208,32231019,32231604	1.000000
cardiac_muscle_cell	chr4	102431170	102431180	102431179	-	High_confidence	8	8	13	0.288019	3.085055	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	1.000000
cardiac_muscle_cell	chr3	132627106	132627117	132627106	-	High_confidence	26	29	48	1.063454	4.490741	chr3	132627080	132627408	LTR|ERV1|MER61C	+	chr3	132579178	132627074	ACAD11|ENST00000487024.1	-	132579178,132603228,132605097,132618633,132619467,132626690	132579558,132603327,132605205,132618772,132619545,132627074	0.770833
cardiac_muscle_cell	chr2	10844298	10844421	10844420	+	RAMPAGE_only	15	15	73	1.617336	4.392807	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10878266	10885118	LOC101929733|NR_110575.1	+	10878266,10884833	10878444,10885118	0.616438
cardiac_muscle_cell	chr5	139364676	139364737	139364719	+	RAMPAGE_only	6	6	29	0.642503	4.351823	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342441	139369720	PAIP2|ENST00000394795.6	+	139342441,139363758,139364563,139368732	139343406,139363922,139364743,139369720	0.965517
cardiac_muscle_cell	chr16	3018400	3018408	3018400	+	High_confidence	9	9	15	0.332329	2.664498	chr16	3018372	3018504	SINE|MIR|MIRc	+	chr16	3018444	3022086	TNFRSF12A|ENST00000573001.5	+	3018444,3021214,3021554,3021770	3018536,3021319,3021689,3022086	0.733333
cardiac_muscle_cell	chr16	30445873	30445877	30445873	-	High_confidence	107	129	191	4.231660	6.116293	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.958115
cardiac_muscle_cell	chr1	83182369	83182418	83182369	-	High_confidence	6	6	42	0.930522	4.594466	chr1	83182174	83188201	LINE|L1|L1PA2	+	chr1	83019431	83182602	MSTRG.1560.1	-	83019431,83182169	83021428,83182602	0.500000
cardiac_muscle_cell	chr3	56321521	56321522	56321521	-	RAMPAGE_only	135	138	167	3.699933	5.997703	chr3	56321414	56321840	LTR|ERV1|MER57F	-	chr3	55510775	56468337	ERC2|ENST00000612797.4	-	55510775,55606779,55683793,55699377,55734770,55888388,55950424,55985976,55992056,56007180,56010448,56018893,56080816,56139508,56148976,56173445,56296018,56434350,56468247	55511276,55606966,55683859,55699512,55734918,55888549,55950560,55985988,55992250,56007321,56010589,56019031,56080984,56139676,56149132,56173520,56296435,56435147,56468337	0.610778
cardiac_muscle_cell	chr14	47795013	47795072	47795013	-	High_confidence	252	280	852	18.876305	6.835098	chr14	47794965	47800647	LINE|L1|L1PA2	+	chr14	47764952	47795014	LINC00648|NR_039996.1	-	47764952,47789905,47794971	47767757,47789943,47795014	0.700704
cardiac_muscle_cell	chr1	236704916	236704937	236704916	+	RAMPAGE_only	8	8	15	0.332329	3.640224	chr1	236704260	236705191	LTR|ERVL|MER21A	-	chr1	236686526	236744769	ACTN2|ENST00000492634.5	+	236686526,236717857,236718893,236720104,236725932,236727677,236731232,236734432,236735634,236737121,236739301,236742895,236744625	236686799,236717972,236719013,236720191,236726020,236727756,236731314,236734518,236735720,236737214,236739532,236743043,236744769	0.933333
cardiac_muscle_cell	chr10	84279967	84279968	84279967	+	High_confidence	31	36	39	0.864056	4.317033	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279990	84288995	LINC00858|ENST00000437892.1	+	84279990,84288223,84288593	84280065,84288420,84288995	0.769231
cardiac_muscle_cell	chr12	110203917	110203930	110203917	+	High_confidence	2	2	9	0.199398	2.750000	chr12	110203870	110203951	LINE|L1|HAL1	+	chr12	110203334	110218560	IFT81|ENST00000550748.1	+	110203334,110205594,110209170,110218043	110205514,110205680,110209216,110218560	0.777778
cardiac_muscle_cell	chr16	89958341	89958353	89958341	+	High_confidence	13	13	29	0.642503	4.384517	chr16	89958222	89958381	LTR|ERVL-MaLR|MLT1K	-	chr16	89958350	89959365	DEF8|ENST00000562044.1	+	89958350,89959013	89958533,89959365	0.758621
cardiac_muscle_cell	chr10	47743694	47743702	47743694	+	High_confidence	3	5	10	0.221553	2.521928	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.600000
cardiac_muscle_cell	chr7	11193316	11193366	11193340	+	High_confidence	22	24	95	2.104752	5.178208	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.705263
cardiac_muscle_cell	chr2	186602127	186602128	186602127	+	RAMPAGE_only	7	7	9	0.199398	2.750000	chr2	186602116	186602175	LINE|RTE-BovB|MamRTE1	-	chr2	186600204	186677441	ITGAV|ENST00000433736.6	+	186600204,186602020,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186600381,186602151,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186677441	0.777778
cardiac_muscle_cell	chr17	60887070	60887094	60887083	+	High_confidence	26	33	116	2.570013	5.932479	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.887931
cardiac_muscle_cell	chr5	150389767	150389768	150389767	+	RAMPAGE_only	7	7	7	0.155087	2.521641	chr5	150389675	150389784	SINE|MIR|MIRb	+	chr5	150357746	150399048	TCOF1|ENST00000504761.6	+	150357746,150361155,150364112,150367843,150368715,150369528,150372005,150374173,150374616,150374953,150375338,150375720,150376081,150376422,150378904,150379228,150379531,150387901,150389886,150391543,150391956,150392707,150393371,150396281,150398353,150399021	150357854,150361211,150364252,150367917,150368902,150369602,150372236,150374386,150374811,150375163,150375554,150375909,150376330,150376620,150379042,150379408,150379732,150388088,150390023,150391657,150392176,150392790,150393552,150396842,150398451,150399048	0.571429
cardiac_muscle_cell	chrX	7147248	7147268	7147248	+	High_confidence	3	3	10	0.221553	2.646439	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	1.000000
cardiac_muscle_cell	chr20	50172544	50172595	50172566	+	High_confidence	10	10	50	1.107764	4.773661	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.640000
cardiac_muscle_cell	chr5	70401416	70401479	70401444	+	RAMPAGE_only	60	96	670	14.844042	6.632009	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.952239
cardiac_muscle_cell	chr4	8436087	8436171	8436138	+	High_confidence	20	20	80	1.772423	4.570542	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8436139	8439301	TRMT44|ENST00000532937.1	+	8436139,8438791	8436399,8439301	0.837500
cardiac_muscle_cell	chr6	73482196	73482238	73482237	+	High_confidence	2	2	8	0.177242	2.521641	chr6	73482272	73482396	SINE|Alu|AluJr	+	chr6	73482131	73500701	MTO1|ENST00000523763.1	+	73482131,73482448,73486597,73492233,73500573	73482244,73482620,73486761,73492352,73500701	0.750000
cardiac_muscle_cell	chr9	37426627	37426649	37426648	+	RAMPAGE_only	4	4	14	0.310174	3.182006	chr9	37426667	37426970	SINE|Alu|AluSx3	+	chr9	37427705	37436989	GRHPR|ENST00000497693.1	+	37427705,37436660	37432138,37436989	0.785714
cardiac_muscle_cell	chr11	65382645	65382659	65382645	-	High_confidence	5	5	9	0.199398	2.503258	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	1.000000
cardiac_muscle_cell	chr8	83967971	83968093	83968052	+	RAMPAGE_only	9	10	63	1.395783	4.904575	chr8	83967386	83969314	LINE|L1|L1PA7	+	chr8	83912712	83987583	MSTRG.35074.4	+	83912712,83967327,83974632,83978571,83979924	83912835,83974590,83976926,83978766,83987583	0.952381
cardiac_muscle_cell	chr8	93795090	93795117	93795113	+	High_confidence	12	14	45	0.996988	4.627090	chr8	93794953	93795181	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.933333
cardiac_muscle_cell	chr3	141697631	141697632	141697631	+	RAMPAGE_only	12	12	13	0.288019	2.688722	chr3	141696851	141698212	LTR|ERV1|HERVFH21-int	-	chr3	141663198	141721074	LOC646730|NR_136190.1	+	141663198,141666779,141681484,141685058,141685871,141690431,141713291,141720991	141663271,141666932,141681633,141685199,141686017,141690527,141713427,141721074	0.769231
cardiac_muscle_cell	chr8	94749699	94749705	94749699	+	RAMPAGE_only	7	10	16	0.354485	3.500000	chr8	94749315	94749714	LTR|ERV1|LTR10E	-	chr8	94719899	94793836	DPY19L4|ENST00000414645.6	+	94719899,94726330,94734629,94738368,94739412,94739644,94756035,94761699,94765182,94765710,94766611,94768394,94770451,94777665,94780358,94781083,94783669,94787893,94789745	94720014,94726441,94734754,94738459,94739534,94739790,94756159,94761834,94765314,94765809,94766685,94768553,94770571,94777786,94780415,94781166,94783802,94788052,94793836	0.562500
cardiac_muscle_cell	chr2	179125334	179125367	179125350	-	High_confidence	20	20	55	1.218541	4.110627	chr2	179124713	179125532	LINE|L2|L2a	+	chr2	179109321	179124467	SESTD1|ENST00000446758.5	-	179109321,179112723,179115064,179116573,179117531,179121769,179123714,179124363	179110028,179112845,179115256,179116790,179117613,179121929,179123829,179124467	0.981818
cardiac_muscle_cell	chr14	73323927	73323928	73323927	-	RAMPAGE_only	5	5	7	0.155087	2.584963	chr14	73323880	73324507	LTR|ERV1|LTR48	+	chr14	73275217	73299375	NUMB|ENST00000556772.5	-	73275217,73279280,73282358,73284080,73287109,73292733,73297210	73277293,73279424,73282505,73284374,73287314,73292874,73299375	0.714286
cardiac_muscle_cell	chr12	55710072	55710077	55710076	+	High_confidence	6	6	11	0.243708	2.921928	chr12	55710078	55710380	SINE|Alu|AluSx1	+	chr12	55709799	55719703	MSTRG.8361.1	+	55709799,55715989,55716932,55719090,55719498	55710402,55716196,55717005,55719223,55719703	0.909091
cardiac_muscle_cell	chr9	128684459	128684485	128684484	-	High_confidence	13	20	72	1.595181	5.338337	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683646	128684738	MSTRG.36992.1	-	128683646	128684738	0.611111
cardiac_muscle_cell	chr11	58927709	58927719	58927709	+	High_confidence	3	3	8	0.177242	2.521641	chr11	58927656	58928383	LTR|ERVK|HERVK22-int	-	chr11	58927700	58956405	GLYATL1|ENST00000317391.8	+	58927700,58942539,58943542,58947045,58947857,58954769,58955175,58955609	58927829,58942584,58943666,58947165,58947965,58954896,58955353,58956405	0.750000
cardiac_muscle_cell	chr14	81170402	81170431	81170402	-	High_confidence	17	19	85	1.883199	5.671730	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.741176
cardiac_muscle_cell	chr4	143470455	143470467	143470455	+	RAMPAGE_only	10	11	20	0.443106	3.616349	chr4	143470450	143470571	DNA|TcMar-Tigger|UCON55	+	chr4	143336829	143474565	GAB1|NM_207123.2	+	143336829,143415476,143433490,143437998,143439801,143440078,143457679,143459384,143460363,143466102,143469030	143337260,143415771,143433716,143438600,143439887,143440382,143457769,143459478,143460487,143466225,143474565	0.950000
cardiac_muscle_cell	chr16	56745215	56745248	56745247	+	RAMPAGE_only	9	11	29	0.642503	4.392127	chr16	56744963	56745793	LINE|L2|L2a	-	chr16	56730129	56844769	NUP93|ENST00000569842.5	+	56730129,56748233,56758537,56798475,56805503,56818663,56821503,56823706,56828976,56830527,56831841,56832294,56833214,56834127,56834369,56834733,56836600,56837607,56838951,56839520,56841704,56842577,56844498	56730211,56748426,56758655,56798538,56805632,56818738,56821593,56823846,56829109,56830685,56832007,56832388,56833406,56834254,56834442,56834778,56836717,56837726,56839069,56839604,56841833,56842695,56844769	0.517241
cardiac_muscle_cell	chr3	46823972	46824061	46824023	-	RAMPAGE_only	3	3	27	0.598193	3.782122	chr3	46822656	46824230	LTR|ERVL-MaLR|THE1D-int	-	chr3	46712114	46855002	MSTRG.24954.1	-	46712114,46712900,46714217,46715534,46717436,46717718,46719943,46748624,46754487,46756041,46812221,46827785,46844137,46848516	46712482,46713067,46714501,46715697,46717637,46718306,46720003,46748651,46754648,46756629,46827765,46836203,46848467,46855002	1.000000
cardiac_muscle_cell	chr19	571725	571774	571754	-	High_confidence	34	42	172	3.810709	5.782999	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.924419
cardiac_muscle_cell	chr4	158841765	158841771	158841770	+	RAMPAGE_only	5	5	11	0.243708	2.732159	chr4	158841566	158842041	LTR|ERVL|LTR75	+	chr4	158832079	158908015	MSTRG.28052.6	+	158832079,158833527,158833800,158835404,158851320,158859056,158859196,158859577,158861341,158861606,158868101,158870312,158891445,158895749,158904465	158832138,158833628,158833890,158835476,158851450,158859145,158859258,158859666,158861488,158861776,158869428,158870469,158891646,158895865,158908015	1.000000
cardiac_muscle_cell	chr12	80217403	80217425	80217412	+	High_confidence	302	316	793	17.569143	7.858859	chr12	80217325	80217441	SINE|MIR|MIRc	-	chr12	80217364	80231166	MSTRG.8687.6	+	80217364,80217597,80219813,80222090,80229256	80217483,80217664,80219912,80222245,80231166	0.525851
cardiac_muscle_cell	chr4	75127418	75127471	75127418	-	RAMPAGE_only	5	5	25	0.553882	3.855389	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.800000
cardiac_muscle_cell	chr18	55892937	55893051	55892972	+	High_confidence	31	35	162	3.589157	5.581019	chr18	55887412	55893439	LINE|L1|L1PA3	-	chr18	55893037	56023462	AC009271.1|ENST00000589440.1	+	55893037,56017727,56023401	55893442,56017779,56023462	0.635802
cardiac_muscle_cell	chr1	39004914	39004981	39004980	+	RAMPAGE_only	21	24	62	1.373628	4.399299	chr1	39005023	39005323	SINE|Alu|AluSx1	+	chr1	38991287	39006059	MSTRG.921.2	+	38991287,38998170,39003346,39004044	38991600,39001106,39003418,39006059	1.000000
cardiac_muscle_cell	chr1	170067623	170067639	170067623	-	RAMPAGE_only	4	4	9	0.199398	2.500000	chr1	170067296	170068769	LINE|L1|L1MB5	+	chr1	169921328	170068915	KIFAP3|NM_001204517.1	-	169921328,169954010,169961045,169972512,169978084,169981971,169982701,169983269,169984581,169992154,170016461,170024417,170031885,170034371,170035453,170038289,170039232,170046711,170055304,170067503	169921781,169954110,169961235,169972598,169978183,169982097,169982867,169983382,169984690,169992255,170016624,170024596,170031984,170034496,170035553,170038431,170039288,170046866,170055436,170068915	0.666667
cardiac_muscle_cell	chr9	26976658	26976670	26976662	+	RAMPAGE_only	3	3	17	0.376640	3.734522	chr9	26976272	26976760	LTR|ERV1|LTR10B2	-	chr9	26956478	27036800	IFT74|ENST00000429045.6	+	26956478,26961948,26978127,26980570,26984256,26984498,26988668,26990133,27009019,27011905,27016906,27018646,27029024,27036449	26956516,26962087,26978263,26980619,26984355,26984559,26988728,26990195,27009158,27011968,27017050,27018687,27029104,27036800	0.705882
cardiac_muscle_cell	chr5	139437414	139437426	139437414	-	High_confidence	2	3	11	0.243708	3.095795	chr5	139437311	139437364	SINE|MIR|MIR	-	chr5	139420201	139437560	DNAJC18|ENST00000507405.5	-	139420201,139425004,139426171,139428537,139437371	139420225,139425114,139426357,139428683,139437560	0.909091
cardiac_muscle_cell	chr1	31681420	31681455	31681451	-	High_confidence	18	19	82	1.816734	5.496220	chr1	31681233	31681470	SINE|MIR|MIRb	-	chr1	31652587	31681459	MSTRG.763.3	-	31652587,31653598,31653866,31654791,31655313,31656097,31657032,31658487,31658913,31660584,31661065,31661413,31661659,31662333,31662586,31665171,31665582,31665881,31666036,31667574,31668164,31668801,31670601,31671614,31672415,31672595,31672723,31675006,31675257,31679631,31679803,31680041,31680904,31681022,31681287	31652853,31653676,31654043,31654858,31655502,31656444,31657068,31658577,31658964,31660638,31661119,31661458,31661704,31662387,31662658,31665234,31665618,31665935,31666081,31667628,31668218,31668855,31670646,31671659,31672502,31672637,31672840,31675039,31675311,31679685,31679851,31680101,31680931,31681067,31681459	0.853659
cardiac_muscle_cell	chr14	23401190	23401215	23401207	-	RAMPAGE_only	3	3	11	0.243708	2.913977	chr14	23401007	23401306	SINE|Alu|AluSz	-	chr14	23382018	23407592	MYH6|ENST00000356287.3	-	23382018,23382427,23383224,23384441,23384915,23385927,23386314,23387528,23387757,23388154,23388858,23389392,23389592,23390056,23392561,23392911,23393341,23393665,23394067,23396283,23396693,23396962,23397169,23397542,23398727,23400255,23400708,23402463,23402696,23403347,23403714,23404295,23404710,23405099,23405222,23405626,23407022,23407575	23382063,23382562,23383320,23384717,23385041,23386131,23386623,23387653,23387923,23388338,23389055,23389511,23389719,23390446,23392652,23393057,23393518,23393908,23394323,23396420,23396817,23397080,23397257,23397613,23399037,23400426,23400977,23402602,23402800,23403446,23403778,23404388,23404822,23405127,23405379,23405770,23407236,23407592	0.636364
cardiac_muscle_cell	chr11	17282791	17282825	17282791	+	RAMPAGE_only	2	3	22	0.487416	3.788755	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.636364
cardiac_muscle_cell	chr1	113759884	113759899	113759898	-	High_confidence	12	16	30	0.664659	4.513153	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.800000
cardiac_muscle_cell	chr17	60886978	60887026	60887005	+	High_confidence	16	19	67	1.484404	5.421373	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.746269
cardiac_muscle_cell	chr3	33838240	33838264	33838263	+	RAMPAGE_only	5	7	14	0.310174	2.719295	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.714286
cardiac_muscle_cell	chr16	63618044	63618046	63618045	-	High_confidence	285	383	424	9.393842	7.287070	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.500000
cardiac_muscle_cell	chr4	47801614	47801617	47801614	-	RAMPAGE_only	6	6	12	0.265863	2.913977	chr4	47801348	47803138	LINE|L1|L1M1	+	chr4	47595481	47790260	CORIN|ENST00000508498.5	-	47595481,47600213,47603396,47623570,47623898,47626404,47641919,47643145,47645080,47653552,47661710,47665031,47674392,47677937,47680140,47683730,47692969,47744401,47763378,47786724,47790220	47595903,47600347,47603668,47623745,47623948,47626521,47642049,47643256,47645194,47653660,47661856,47665263,47674500,47678054,47680251,47683838,47693083,47744583,47763586,47786925,47790260	0.750000
cardiac_muscle_cell	chr9	69307536	69307572	69307562	-	High_confidence	6	6	23	0.509572	4.055958	chr9	69306938	69307567	LTR|ERV1|MER41B	-	chr9	69296684	69307135	BANCR|ENST00000624238.2	-	69296684,69304935,69306147,69306853	69296867,69305077,69306290,69307135	0.782609
cardiac_muscle_cell	chr12	8320262	8320284	8320266	+	High_confidence	25	28	54	1.196386	5.238901	chr12	8318355	8321168	LTR|ERV1|HERVS71-int	-	chr12	8320380	8369555	AC092745.2|ENST00000537764.1	+	8320380,8368981	8320426,8369555	0.814815
cardiac_muscle_cell	chr4	65998906	65998926	65998925	+	High_confidence	14	16	23	0.509572	3.689704	chr4	65993299	65999302	LINE|L1|L1PA2	-	chr4	65998845	66150012	AC116049.2|ENST00000508572.1	+	65998845,66122355,66135387,66149873	65999308,66122428,66135466,66150012	0.565217
cardiac_muscle_cell	chr2	200857745	200857754	200857745	-	High_confidence	4	4	11	0.243708	2.921928	chr2	200857615	200857696	LINE|L1|L1MA8	-	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.818182
cardiac_muscle_cell	chr3	183683125	183683135	183683125	+	RAMPAGE_only	4	4	12	0.265863	2.913977	chr3	183682928	183683231	SINE|Alu|AluSx3	-	chr3	183635622	183684519	KLHL24|NM_017644.3	+	183635622,183643479,183650295,183663457,183664920,183671033,183672295,183679085	183635793,183643542,183651276,183663642,183665039,183671222,183672484,183684519	0.916667
cardiac_muscle_cell	chr4	92523813	92523845	92523813	+	RAMPAGE_only	2	2	8	0.177242	2.500000	chr4	92522918	92523890	LINE|L2|L2	-	chr4	92304484	93217267	GRID2|ENST00000505687.5	+	92304484,92590130,93084994,93110747,93207403,93216737	92304744,92590286,93085279,93110953,93207457,93217267	0.625000
cardiac_muscle_cell	chr12	124014259	124014294	124014259	+	RAMPAGE_only	5	5	24	0.531727	3.751629	chr12	124013958	124014362	LINE|L2|L2a	-	chr12	123973294	124015422	ZNF664|ENST00000337815.8	+	123973294,123973885,123988042,124011380,124011545	123973352,123974020,123988138,124011441,124015422	1.000000
cardiac_muscle_cell	chr5	44817881	44817892	44817891	+	RAMPAGE_only	4	4	10	0.221553	2.725481	chr5	44817550	44817906	LTR|ERVL-MaLR|MLT1A0	+	chr5	44815218	44820428	MRPS30|ENST00000230914.4	+	44815218,44816442	44815563,44820428	0.900000
cardiac_muscle_cell	chr9	69372660	69372687	69372681	+	RAMPAGE_only	5	5	13	0.288019	2.584963	chr9	69372181	69373080	LINE|L1|L1MB2	-	chr9	69324795	69388445	MSTRG.36271.5	+	69324795,69336212,69371498,69377369,69377610,69383629,69383946,69385794,69388157	69325723,69336269,69375864,69377477,69377744,69383735,69384025,69385947,69388445	0.923077
cardiac_muscle_cell	chr22	46335333	46335383	46335377	+	High_confidence	5	7	25	0.553882	3.720176	chr22	46335152	46335459	LTR|ERV1|MER4B	-	chr22	46335400	46357340	TRMU|NM_018006.4	+	46335400,46337778,46343261,46346421,46350290,46352120,46352263,46353766,46355443,46355989,46356841	46335846,46337944,46343368,46346544,46350463,46352174,46352330,46353867,46355588,46356072,46357340	0.960000
cardiac_muscle_cell	chr11	68904179	68904201	68904179	-	High_confidence	7	9	13	0.288019	3.238901	chr11	68904163	68904319	LINE|CR1|L3	-	chr11	68891277	68903835	MRPL21|NM_181515.1	-	68891277,68892889,68893402,68896514,68897926,68900534,68903722	68891395,68892993,68893455,68896678,68898012,68900605,68903835	1.000000
cardiac_muscle_cell	chr11	64226142	64226186	64226158	-	High_confidence	360	388	2549	56.473827	7.576942	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.950961
cardiac_muscle_cell	chr22	39021125	39021156	39021125	+	High_confidence	20	20	118	2.614324	5.193225	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.932203
cardiac_muscle_cell	chr12	1103538	1103539	1103538	+	RAMPAGE_only	14	15	15	0.332329	3.182006	chr12	1103178	1103695	LINE|L2|L2a	-	chr12	1083572	1244956	ERC1|ENST00000536573.6	+	1083572,1104749,1110191,1112214,1115865,1141619,1180539,1181924,1183280,1189858,1236768,1244542	1083580,1104824,1110347,1112307,1116033,1141787,1180677,1182065,1183421,1190052,1236904,1244956	0.866667
cardiac_muscle_cell	chr12	83472653	83472670	83472653	-	High_confidence	16	16	32	0.708969	4.413910	chr12	83472101	83472741	LTR|ERVL-MaLR|MLT1E2	+	chr12	83456452	83472520	MSTRG.8728.1	-	83456452,83472259	83458952,83472520	1.000000
cardiac_muscle_cell	chr11	47769725	47769750	47769736	-	RAMPAGE_only	7	7	21	0.465261	3.916127	chr11	47769430	47769893	LTR|ERV1|LTR2	+	chr11	47716509	47767478	FNBP4|NM_001318339.1	-	47716509,47719928,47722975,47724027,47724467,47731373,47732536,47734024,47736615,47743952,47746055,47750915,47751142,47752915,47754527,47765269,47767062	47717512,47720086,47723316,47724172,47724778,47731561,47732670,47734129,47736740,47744163,47746394,47751036,47751290,47753102,47754664,47765362,47767478	0.952381
cardiac_muscle_cell	chr1	28681084	28681085	28681084	+	RAMPAGE_only	16	16	16	0.354485	2.952820	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	0.812500
cardiac_muscle_cell	chr5	102671389	102671464	102671425	-	High_confidence	5	5	28	0.620348	4.032303	chr5	102671229	102677260	LINE|L1|L1PA2	+	chr5	102608491	102671464	LINC00491|NR_103753.1	-	102608491,102636142,102671226	102609766,102636291,102671464	0.535714
cardiac_muscle_cell	chr5	81473699	81473743	81473699	-	RAMPAGE_only	3	3	21	0.465261	3.721928	chr5	81473245	81473683	LINE|L1|L1PA8	-	chr5	81419978	81448063	SSBP2|ENST00000510060.5	-	81419978,81428584,81437429,81440557,81442652,81446867,81447909	81420533,81428683,81437458,81440636,81442723,81446922,81448063	0.952381
cardiac_muscle_cell	chr2	163120290	163120291	163120290	+	High_confidence	604	608	622	13.780589	6.300307	chr2	163120011	163120443	LTR|ERV1|MER83	+	chr2	163120300	163124952	MSTRG.21335.2	+	163120300,163121793,163124118	163120731,163121927,163124952	0.954984
cardiac_muscle_cell	chr1	6200833	6200864	6200863	-	High_confidence	11	12	51	1.129920	3.789444	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	1.000000
cardiac_muscle_cell	chr8	39685111	39685130	39685111	+	High_confidence	2	2	11	0.243708	2.845351	chr8	39684703	39685147	LTR|ERV1|LTR2	+	chr8	39685129	39730062	ADAM18|ENST00000523755.5	+	39685129,39692599,39706789,39723747,39729897	39685412,39692680,39706904,39723907,39730062	1.000000
cardiac_muscle_cell	chr5	148410400	148410414	148410400	+	RAMPAGE_only	3	3	13	0.288019	3.251629	chr5	148410178	148410561	LTR|ERVL-MaLR|THE1B	+	chr5	148415359	148417215	FBXO38|ENST00000508485.2	+	148415359,148415927,148416993	148415387,148416070,148417215	0.615385
cardiac_muscle_cell	chr7	40509494	40509495	40509494	+	RAMPAGE_only	9	9	14	0.310174	3.039149	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40742493	40860631	MSTRG.32830.8	+	40742493,40749433,40860315	40742692,40749497,40860631	0.928571
cardiac_muscle_cell	chr8	143281655	143281687	143281686	-	High_confidence	275	308	1115	24.703145	5.124315	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.778475
cardiac_muscle_cell	chr20	6039273	6039286	6039273	-	RAMPAGE_only	2	3	9	0.199398	2.503258	chr20	6039160	6039261	SINE|Alu|FRAM	-	chr20	6035537	6054049	MSTRG.22428.1	-	6035537,6039281,6044542,6050778,6052144,6053829	6039261,6042246,6044680,6050983,6052804,6054049	1.000000
cardiac_muscle_cell	chr7	39013338	39013356	39013338	+	High_confidence	5	5	14	0.310174	3.324863	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.785714
cardiac_muscle_cell	chr20	25437250	25437261	25437250	+	RAMPAGE_only	5	5	11	0.243708	3.095795	chr20	25436252	25437621	LINE|L1|L1MB3	-	chr20	25407726	25448555	GINS1|ENST00000262460.4	+	25407726,25413789,25417103,25418104,25425210,25441701,25445922	25407895,25413854,25417202,25418195,25425327,25441776,25448555	0.818182
cardiac_muscle_cell	chrX	155719045	155719070	155719045	-	RAMPAGE_only	80	97	253	5.605288	6.855404	chrX	155718901	155722240	LINE|L1|L1M1	+	chrX	155489010	155612961	TMLHE|NM_018196.3	-	155489010,155492356,155506897,155511672,155513985,155524455,155545095,155612791	155491666,155492495,155507134,155511792,155514265,155524632,155545277,155612961	0.608696
cardiac_muscle_cell	chr10	18549063	18549064	18549063	-	RAMPAGE_only	8	8	10	0.221553	2.725481	chr10	18548737	18549669	LINE|L2|L2a	+	chr10	18545560	18651622	NSUN6|ENST00000377304.6	-	18545560,18548111,18551822,18585948,18596207,18609844,18614459,18616183,18642475,18648489,18651128	18546145,18548237,18551971,18586093,18596327,18609926,18614613,18616293,18642555,18648645,18651622	0.900000
cardiac_muscle_cell	chr19	55280217	55280246	55280217	-	High_confidence	9	17	45	0.996988	3.611508	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.933333
cardiac_muscle_cell	chr9	121286538	121286549	121286538	+	High_confidence	3	4	12	0.265863	3.095795	chr9	121286415	121286709	LINE|L2|L2b	+	chr9	121286579	121332842	GSN|NM_001258030.1	+	121286579,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286761,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.916667
cardiac_muscle_cell	chr1	151166642	151166686	151166685	+	High_confidence	11	11	29	0.642503	3.913800	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	0.965517
cardiac_muscle_cell	chr8	123413102	123413166	123413102	-	RAMPAGE_only	8	10	47	1.041298	5.028890	chr8	123412758	123413395	LTR|ERV1|MER67B	+	chr8	123320501	123416350	ATAD2|ENST00000521903.5	-	123320501,123322937,123325892,123328189,123333877,123334199,123336372,123337624,123339310,123344883,123346085,123346617,123347091,123348186,123349284,123356388,123357561,123359220,123359576,123361538,123369057,123369820,123370902,123371235,123371669,123372636,123380528,123400742,123416247	123321175,123323066,123326026,123328579,123334021,123334322,123336532,123337821,123339446,123345069,123346272,123346750,123347406,123348273,123349421,123356477,123357736,123359336,123359685,123361646,123369175,123370024,123370990,123371338,123371835,123372686,123380677,123401175,123416350	0.851064
cardiac_muscle_cell	chr5	14653390	14653391	14653390	-	High_confidence	81	84	87	1.927510	4.033299	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.954023
cardiac_muscle_cell	chr11	75979574	75979636	75979604	+	High_confidence	34	34	240	5.317269	6.358925	chr11	75974665	75980018	LINE|L1|L1PA6	-	chr11	75979525	76142651	UVRAG|ENST00000531818.5	+	75979525,75983386,76004004,76007533,76008806,76016814,76065709,76115923,76140710	75980038,75983513,76004089,76007621,76008867,76016980,76065788,76116015,76142651	0.933333
cardiac_muscle_cell	chr1	218442361	218442807	218442777	+	High_confidence	18	18	451	9.992035	6.085084	chr1	218442725	218442783	LTR|ERV1|LTR64	-	chr1	218442625	218443996	TGFB2-OT1|ENST00000625474.1	+	218442625	218443996	0.975610
cardiac_muscle_cell	chr4	102431228	102431248	102431244	-	High_confidence	32	36	114	2.525703	5.311298	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.938596
cardiac_muscle_cell	chr1	203040816	203040817	203040816	+	RAMPAGE_only	9	9	10	0.221553	2.725481	chr1	203040699	203040878	SINE|MIR|MIRb	-	chr1	203034483	203078735	PPFIA4|ENST00000295706.8	+	203034483,203034702,203035238,203035558,203037173,203038946,203043396,203043930,203044378,203044695,203045367,203045840,203046247,203048226,203048570,203048917,203049675,203051768,203053752,203055431,203056119,203056374,203056783,203059177,203059769,203060216,203060969,203063827,203067694,203068452,203071691,203075576,203076340	203034589,203034780,203035322,203035640,203037202,203039242,203043498,203044095,203044453,203044785,203045559,203045987,203046382,203048310,203048714,203048980,203049767,203051877,203053961,203055672,203056155,203056508,203056950,203059271,203059851,203060417,203061032,203064003,203067792,203068628,203071760,203075757,203078735	0.700000
cardiac_muscle_cell	chr15	57357170	57357177	57357170	+	RAMPAGE_only	9	9	15	0.332329	3.006239	chr15	57357113	57357474	DNA|TcMar-Tigger|Tigger2a	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.933333
cardiac_muscle_cell	chr1	169124612	169124634	169124612	+	RAMPAGE_only	4	4	21	0.465261	3.471354	chr1	169124508	169124714	SINE|MIR|MIRb	+	chr1	169107906	169127399	ATP1B1|ENST00000494797.1	+	169107906,169111369,169124883,169127223	169108163,169111498,169125039,169127399	0.857143
cardiac_muscle_cell	chr3	196936483	196936525	196936483	-	RAMPAGE_only	2	2	10	0.221553	2.947703	chr3	196936453	196936575	SINE|Alu|AluJr	-	chr3	196935405	196942377	NCBP2|ENST00000447325.5	-	196935405,196937509,196939250,196942159	196937082,196937648,196939432,196942377	0.900000
cardiac_muscle_cell	chr2	185424811	185424817	185424816	+	High_confidence	3	3	8	0.177242	2.750000	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185424833	185513894	MSTRG.21571.1	+	185424833,185434096,185483033,185513450	185425507,185434191,185483091,185513894	0.625000
cardiac_muscle_cell	chr2	237085326	237085356	237085332	+	High_confidence	8	8	42	0.930522	4.735362	chr2	237085222	237085359	LINE|L2|L2	-	chr2	237085311	237100466	COPS8|ENST00000354371.6	+	237085311,237087126,237088604,237089861,237094089,237095821,237096821,237097662	237086042,237087197,237088653,237089994,237094197,237095884,237096869,237100466	0.928571
cardiac_muscle_cell	chr15	47339078	47339079	47339078	+	RAMPAGE_only	8	8	12	0.265863	3.084963	chr15	47338778	47339538	LTR|ERVL|MER21A	+	chr15	47184205	47774223	SEMA6D|NM_001198999.1	+	47184205,47412392,47470473,47600864,47759744,47760303,47760977,47761157,47761329,47761660,47762199,47763015,47763849,47764173,47764637,47764882,47765868,47766104,47766576,47770496	47184418,47412472,47470545,47600896,47759907,47760415,47761038,47761220,47761431,47761751,47762319,47763104,47764067,47764305,47764793,47765056,47766009,47766182,47766677,47774223	0.500000
cardiac_muscle_cell	chr1	227142956	227142959	227142956	-	RAMPAGE_only	5	5	9	0.199398	2.725481	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317714	CDC42BPA|ENST00000334218.9	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227059372,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227112670,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227059411,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227112913,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317714	1.000000
cardiac_muscle_cell	chr13	60267790	60267825	60267790	+	High_confidence	16	18	87	1.927510	4.835751	chr13	60266267	60268006	LTR|ERV1|HERV30-int	-	chr13	60267727	60268426	MSTRG.9882.1	+	60267727	60268426	0.942529
cardiac_muscle_cell	chr2	215383347	215383375	215383357	-	High_confidence	4	5	22	0.487416	3.139354	chr2	215383001	215383307	SINE|Alu|AluSz	-	chr2	215379204	215383483	FN1|ENST00000490833.5	-	215379204,215380810,215382002,215382211,215383327	215379317,215381080,215382048,215382325,215383483	0.681818
cardiac_muscle_cell	chr19	48868595	48868637	48868613	-	High_confidence	620	686	2698	59.774965	7.736453	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.981838
cardiac_muscle_cell	chr3	98733173	98733206	98733184	+	High_confidence	25	25	136	3.013119	5.929205	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.816176
cardiac_muscle_cell	chrX	53220857	53220872	53220857	-	RAMPAGE_only	2	3	7	0.155087	2.521641	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	1.000000
cardiac_muscle_cell	chr15	30758013	30758047	30758013	+	RAMPAGE_only	5	5	20	0.443106	3.084184	chr15	30757872	30758013	LINE|L2|L2b	+	chr15	30658739	30768126	AC091057.1|ENST00000562954.1	+	30658739,30716219,30750401,30767857	30658844,30716342,30750556,30768126	0.850000
cardiac_muscle_cell	chr19	17823626	17823627	17823626	-	RAMPAGE_only	32	33	33	0.731124	4.324699	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.939394
cardiac_muscle_cell	chr1	218519445	218519452	218519445	+	RAMPAGE_only	7	7	12	0.265863	2.663533	chr1	218519114	218519572	LINE|L2|L2c	-	chr1	218524839	218525978	C1orf143|ENST00000491260.2	+	218524839,218525406	218525080,218525978	0.666667
cardiac_muscle_cell	chr1	23417903	23417925	23417904	-	RAMPAGE_only	6	10	20	0.443106	3.784184	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.700000
cardiac_muscle_cell	chr4	64323226	64323227	64323226	-	RAMPAGE_only	11	12	13	0.288019	2.625815	chr4	64323117	64323423	SINE|Alu|AluJb	+	chr4	64278458	64409398	MSTRG.27289.3	-	64278458,64281473,64289709,64299973,64305165,64309825,64322688,64328511,64375171,64409117	64281086,64281559,64289767,64300017,64305238,64314763,64322792,64328556,64375223,64409398	0.846154
cardiac_muscle_cell	chr15	51936194	51936208	51936194	-	RAMPAGE_only	52	80	241	5.339424	4.675095	chr15	51935784	51936413	LTR|ERVL|LTR50	-	chr15	51919072	51930627	AC090971.3|ENST00000557871.1	-	51919072,51921783,51922721,51924039,51925745,51926780,51928206,51929333,51930530	51919145,51921873,51922908,51924177,51925881,51926870,51928291,51929478,51930627	0.763485
cardiac_muscle_cell	chr14	61463050	61463090	61463050	+	RAMPAGE_only	6	6	30	0.664659	4.323161	chr14	61463043	61463245	SINE|MIR|MIRb	+	chr14	61477166	61549946	PRKCH|ENST00000536400.5	+	61477166,61485501,61529074,61530406,61547742,61549684	61477245,61485656,61529213,61530595,61547886,61549946	0.700000
cardiac_muscle_cell	chr13	20099171	20099208	20099171	+	RAMPAGE_only	4	4	20	0.443106	3.821928	chr13	20097834	20099226	LINE|L1|HAL1	+	chr13	20102700	20103230	LINC01072|ENST00000455848.1	+	20102700,20102925	20102826,20103230	0.800000
cardiac_muscle_cell	chr2	179051641	179051670	179051653	-	RAMPAGE_only	3	4	11	0.243708	2.845351	chr2	179051586	179051988	LTR|ERV1|LTR7	-	chr2	178872132	179050086	CCDC141|ENST00000446116.5	-	178872132,178877963,178884900,178886751,178888526,178905328,178944534,178961229,178975056,178978483,179047283,179049839	178872312,178878143,178885092,178886871,178888668,178905501,178944651,178961483,178975165,178978675,179047406,179050086	0.909091
cardiac_muscle_cell	chrX	74000284	74000315	74000284	+	RAMPAGE_only	2	2	9	0.199398	2.725481	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	1.000000
cardiac_muscle_cell	chr10	65570509	65570536	65570519	+	High_confidence	98	143	634	14.046452	6.799506	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570525	65672549	MSTRG.4224.5	+	65570525,65571424,65572934,65585484,65615635,65670688,65672311	65570759,65571579,65573056,65585802,65615761,65670871,65672549	0.728707
cardiac_muscle_cell	chr3	9363405	9363420	9363405	+	High_confidence	8	10	27	0.598193	3.810081	chr3	9363443	9363535	LINE|L2|L2b	+	chr3	9363097	9384870	THUMPD3|ENST00000515662.6	+	9363097,9365015,9366907,9371059,9374515,9377818,9380502,9383198,9384211,9384523	9363728,9365320,9366985,9371536,9374646,9377888,9380618,9383309,9384335,9384870	0.888889
cardiac_muscle_cell	chr3	157122999	157123015	157123001	-	High_confidence	7	11	34	0.753280	4.413910	chr3	157122796	157123135	LTR|ERVL-MaLR|MLT1A1	-	chr3	157081666	157123002	LINC00880|NR_034007.1	-	157081666,157101934,157103357,157122875	157083275,157102092,157103479,157123002	0.735294
cardiac_muscle_cell	chr13	22041315	22041323	22041315	+	High_confidence	5	5	11	0.243708	2.721928	chr13	22041251	22041402	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.818182
cardiac_muscle_cell	chr11	67620389	67620419	67620389	+	High_confidence	2	3	12	0.265863	2.913977	chr11	67620425	67625693	LTR|ERV1|HERV9NC-int	+	chr11	67619993	67640431	MSTRG.6357.4	+	67619993,67636532	67628062,67640431	0.916667
cardiac_muscle_cell	chr2	46905034	46905130	46905129	-	RAMPAGE_only	5	5	27	0.598193	3.468626	chr2	46904869	46905220	LTR|ERVL-MaLR|THE1A	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	1.000000
cardiac_muscle_cell	chr8	93795165	93795170	93795166	+	High_confidence	6	9	20	0.443106	3.721612	chr8	93794953	93795181	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.800000
cardiac_muscle_cell	chr20	56367467	56367505	56367491	+	RAMPAGE_only	6	6	25	0.553882	4.213661	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	1.000000
cardiac_muscle_cell	chr4	64310774	64310980	64310842	-	RAMPAGE_only	16	16	226	5.007095	5.055939	chr4	64310733	64311018	SINE|Alu|AluJb	-	chr4	64278458	64409398	MSTRG.27289.3	-	64278458,64281473,64289709,64299973,64305165,64309825,64322688,64328511,64375171,64409117	64281086,64281559,64289767,64300017,64305238,64314763,64322792,64328556,64375223,64409398	0.995575
cardiac_muscle_cell	chr20	56367267	56367314	56367313	+	RAMPAGE_only	4	4	15	0.332329	3.106891	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	1.000000
cardiac_muscle_cell	chr5	67818311	67818327	67818311	-	High_confidence	7	8	28	0.620348	4.235926	chr5	67817944	67823959	LINE|L1|L1PA3	+	chr5	67699450	67818322	AC106798.1|ENST00000506819.1	-	67699450,67701490,67817939,67818279	67699725,67701652,67818048,67818322	0.500000
cardiac_muscle_cell	chr14	81192669	81192676	81192675	-	RAMPAGE_only	4	6	12	0.265863	2.913977	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.833333
cardiac_muscle_cell	chr1	239629036	239629041	239629036	+	High_confidence	4	5	8	0.177242	2.750000	chr1	239623498	239629523	LINE|L1|L1HS	-	chr1	239629072	239915452	CHRM3|ENST00000255380.8	+	239629072,239632223,239678185,239827251,239907432	239629539,239632286,239678288,239827378,239915452	0.875000
cardiac_muscle_cell	chr11	4129116	4129136	4129135	+	RAMPAGE_only	5	5	17	0.376640	3.616875	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	1.000000
cardiac_muscle_cell	chr3	32138220	32138249	32138232	+	RAMPAGE_only	5	5	16	0.354485	3.202820	chr3	32137833	32138280	LTR|ERVL|LTR33	-	chr3	32158333	32168706	GPD1L|ENST00000474846.5	+	32158333,32159567,32165813	32159109,32159674,32168706	0.500000
cardiac_muscle_cell	chr2	178679583	178679659	178679637	-	RAMPAGE_only	12	12	88	1.949665	5.870824	chr2	178679617	178679655	LINE|CR1|L3	-	chr2	178636751	178702520	TTN|ENST00000414766.5	-	178636751,178639698,178640047,178640540,178641240,178642236,178673632,178674313,178678124,178678413,178678746,178681660,178682696,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453	178636799,178639788,178640110,178640630,178641315,178642317,178673710,178674409,178678208,178678497,178678830,178681738,178682903,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702520	0.613636
cardiac_muscle_cell	chr4	110411060	110411071	110411070	+	RAMPAGE_only	8	8	21	0.465261	3.689704	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110365732	110506258	ENPEP|ENST00000510961.1	+	110365732,110488540,110491032,110500028,110506182	110365804,110488682,110491164,110500163,110506258	0.523810
cardiac_muscle_cell	chr22	39320379	39320392	39320379	-	High_confidence	4	4	9	0.199398	2.641604	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	1.000000
cardiac_muscle_cell	chr17	59651206	59651243	59651208	+	RAMPAGE_only	6	10	28	0.620348	4.161978	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.714286
cardiac_muscle_cell	chr4	64305531	64305702	64305615	-	RAMPAGE_only	6	6	92	2.038286	4.896316	chr4	64305438	64306047	LTR|ERV1|LTR77	+	chr4	64304904	64409456	TECRL|ENST00000511356.1	-	64304904,64309825,64314647,64322688,64328511,64375171,64409117	64305238,64309931,64314763,64322792,64328556,64375223,64409456	0.869565
cardiac_muscle_cell	chrX	149606249	149606250	149606249	-	RAMPAGE_only	10	10	12	0.265863	3.084963	chrX	149605893	149606457	DNA|hAT-Charlie|MER119	-	chrX	149597964	149608751	TMEM185A|ENST00000502858.3	-	149597964,149599553,149600302,149608626	149598255,149599677,149600479,149608751	0.500000
cardiac_muscle_cell	chr19	12800915	12800991	12800944	-	High_confidence	29	30	267	5.915462	5.158200	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.985019
cardiac_muscle_cell	chrX	29941491	29941544	29941514	+	RAMPAGE_only	9	10	45	0.996988	5.033184	chrX	29940922	29941551	LTR|ERVL?|LTR87	+	chrX	29917462	29955820	IL1RAPL1|ENST00000302196.5	+	29917462,29919948,29941650,29954521,29955101	29917596,29920094,29941794,29954692,29955820	0.844444
cardiac_muscle_cell	chr12	12927733	12927744	12927733	+	High_confidence	126	126	226	5.007095	7.124188	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.504425
cardiac_muscle_cell	chr8	23432423	23432590	23432515	-	RAMPAGE_only	15	15	127	2.813721	4.490060	chr8	23432504	23432797	SINE|Alu|AluY	-	chr8	23429151	23447787	MSTRG.34496.20	-	23429151,23434316,23435391,23436933,23439748,23441568,23442006,23443849,23444455,23447679	23433154,23434681,23435477,23437258,23439915,23441723,23442066,23443953,23444606,23447787	1.000000
cardiac_muscle_cell	chr2	31496793	31496800	31496793	-	RAMPAGE_only	4	4	10	0.221553	2.721928	chr2	31496361	31500000	LINE|L1|L1P1	+	chr2	31334321	31414745	XDH|NM_000379.3	-	31334321,31337640,31339488,31341328,31342182,31344683,31346768,31347521,31348267,31348898,31349685,31350031,31364157,31365456,31365975,31366869,31367960,31368540,31370354,31372227,31373872,31375379,31377052,31379866,31381632,31383000,31383754,31386413,31387810,31388226,31397667,31398572,31401219,31403047,31405906,31414624	31336008,31337817,31339677,31341394,31342297,31344736,31346843,31347650,31348363,31348980,31349831,31350223,31364244,31365544,31366109,31366994,31368057,31368660,31370478,31372397,31373956,31375554,31377237,31379976,31381726,31383152,31383847,31386555,31387897,31388295,31397729,31398699,31401328,31403144,31405964,31414745	0.700000
cardiac_muscle_cell	chr1	83182543	83182559	83182553	-	High_confidence	12	13	48	1.063454	3.993701	chr1	83182174	83188201	LINE|L1|L1PA2	+	chr1	83019431	83182602	MSTRG.1560.1	-	83019431,83182169	83021428,83182602	0.875000
cardiac_muscle_cell	chr21	44485669	44485714	44485713	+	High_confidence	6	6	31	0.686814	4.237291	chr21	44485339	44486157	LTR|ERV1|LTR1A2	+	chr21	44485576	44490288	LINC02575|ENST00000449713.1	+	44485576,44490030	44486230,44490288	0.709677
cardiac_muscle_cell	chr4	110410956	110410957	110410956	+	RAMPAGE_only	15	16	21	0.465261	3.522572	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110365732	110506258	ENPEP|ENST00000510961.1	+	110365732,110488540,110491032,110500028,110506182	110365804,110488682,110491164,110500163,110506258	0.523810
cardiac_muscle_cell	chr1	200411799	200411884	200411799	+	High_confidence	191	192	373	8.263922	5.741777	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411799	200475513	AC104461.1|ENST00000634596.1	+	200411799,200473908	200411962,200475513	0.863271
cardiac_muscle_cell	chrX	10589962	10589963	10589962	-	High_confidence	10	10	12	0.265863	3.277613	chrX	10589852	10590340	LTR|ERV1|LTR2B	-	chrX	10445555	10589909	MID1|ENST00000380780.5	-	10445555,10454869,10459645,10469696,10474622,10482479,10495583,10523091,10566887,10589586	10449716,10455077,10459807,10469840,10474750,10482628,10495691,10523187,10567603,10589909	0.583333
cardiac_muscle_cell	chr6	109250863	109250867	109250863	+	RAMPAGE_only	7	7	13	0.288019	2.719295	chr6	109245218	109251251	LINE|L1|L1PA2	-	chr6	109236613	109270514	LOC100996634|NM_001277339.1	+	109236613,109239327,109242178,109254447,109255370,109257545,109261888,109264800,109267807,109270038	109236780,109239520,109242306,109254648,109255492,109257774,109262091,109264956,109267901,109270514	0.615385
cardiac_muscle_cell	chr1	168137486	168137508	168137486	-	High_confidence	3	3	17	0.376640	3.125000	chr1	168137391	168137473	LINE|L2|L2b	-	chr1	168085277	168137583	GPR161|ENST00000367835.1	-	168085277,168087584,168090563,168096507,168104476,168114455,168137164	168085796,168087704,168090668,168097232,168104894,168114549,168137583	0.823529
cardiac_muscle_cell	chr20	25191841	25191852	25191851	-	RAMPAGE_only	5	5	11	0.243708	3.121928	chr20	25191623	25192078	LTR|ERVL|MER70A	-	chr20	25184671	25196892	LOC101926889|NR_109994.1	-	25184671,25186541,25186896,25187852,25190217,25196622	25186160,25186699,25186979,25187947,25190302,25196892	0.545455
cardiac_muscle_cell	chr3	138593997	138594016	138593997	-	High_confidence	3	4	11	0.243708	2.913977	chr3	138593850	138594045	SINE|MIR|MIRb	-	chr3	138572858	138594129	CEP70|ENST00000485115.1	-	138572858,138591853,138593708	138572932,138591956,138594129	0.636364
cardiac_muscle_cell	chr10	32954320	32954323	32954322	-	RAMPAGE_only	19	41	56	1.240696	4.916742	chr10	32953969	32954360	LINE|L2|L2	+	chr10	32928149	32955663	ITGB1|ENST00000480226.5	-	32928149,32929821,32932514,32935491,32955569	32928264,32930044,32932600,32935558,32955663	0.875000
cardiac_muscle_cell	chr20	33441360	33441386	33441385	-	RAMPAGE_only	15	15	29	0.642503	4.280395	chr20	33441339	33441479	SINE|MIR|MIR3	-	chr20	33407954	33443892	SNTA1|ENST00000217381.2	-	33407954,33408700,33410134,33412295,33412574,33417718,33438840,33443310	33408599,33408888,33410331,33412426,33412782,33417923,33439026,33443892	0.689655
cardiac_muscle_cell	chr10	133369990	133370017	133370016	-	RAMPAGE_only	8	10	18	0.398795	3.734522	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.833333
cardiac_muscle_cell	chr12	21395386	21395410	21395396	-	High_confidence	20	23	52	1.152075	5.248329	chr12	21395009	21401039	LINE|L1|L1PA2	+	chr12	21318830	21395397	SLCO1A2|ENST00000421287.5	-	21318830,21334587,21394905	21318923,21334704,21395397	0.576923
cardiac_muscle_cell	chr5	115209676	115209678	115209677	-	RAMPAGE_only	6	8	12	0.265863	2.918296	chr5	115208861	115209680	LINE|L1|L1M8	-	chr5	115204011	115262872	PGGT1B|ENST00000419445.5	-	115204011,115216864,115221823,115230975,115236389,115237857,115241538,115253136,115262711	115212583,115216973,115222008,115231021,115236522,115238009,115241606,115253255,115262872	1.000000
cardiac_muscle_cell	chr9	69307095	69307135	69307134	-	High_confidence	57	64	355	7.865127	6.102058	chr9	69306938	69307567	LTR|ERV1|MER41B	-	chr9	69296684	69307135	BANCR|ENST00000624238.2	-	69296684,69304935,69306147,69306853	69296867,69305077,69306290,69307135	0.926761
cardiac_muscle_cell	chr22	18149848	18149869	18149868	+	High_confidence	34	34	57	1.262851	3.931145	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.982456
cardiac_muscle_cell	chr13	24580593	24580623	24580593	+	High_confidence	5	5	24	0.531727	4.053509	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.875000
cardiac_muscle_cell	chr8	93698580	93698581	93698580	+	High_confidence	58	60	67	1.484404	5.435273	chr8	93698481	93698872	LTR|ERVL-MaLR|MLT1H2	+	chr8	93698560	93709779	FAM92A|ENST00000523475.5	+	93698560,93701223,93703619,93704908,93708010,93709770	93698747,93701458,93703688,93705010,93708016,93709779	0.582090
cardiac_muscle_cell	chr12	40241063	40241064	40241063	+	RAMPAGE_only	19	19	24	0.531727	3.657268	chr12	40240740	40241125	LINE|L2|L2b	-	chr12	40225187	40251544	LRRK2|ENST00000644108.1	+	40225187,40225554,40227890,40232273,40235625,40237968,40240482,40243549,40249825,40251231,40251464	40225282,40225640,40227916,40232383,40235714,40238103,40240617,40243681,40249945,40251374,40251544	0.916667
cardiac_muscle_cell	chr1	201373866	201373903	201373866	-	High_confidence	4	4	24	0.531727	3.740602	chr1	201373644	201373868	SINE|Alu|AluJb	-	chr1	201363328	201373315	TNNT2|ENST00000466570.5	-	201363328,201364297,201365190,201365609,201366837,201367770,201368161,201372026,201373118	201363406,201364375,201365307,201365670,201366871,201367803,201368227,201372155,201373315	0.500000
cardiac_muscle_cell	chr8	144427274	144427275	144427274	-	High_confidence	8	9	9	0.199398	2.750000	chr8	144427020	144427326	SINE|Alu|AluSx	+	chr8	144424964	144427294	VPS28|ENST00000531924.1	-	144424964,144425682,144426025,144426908	144425000,144425772,144426208,144427294	0.777778
cardiac_muscle_cell	chr12	31447662	31447663	31447662	-	RAMPAGE_only	10	11	12	0.265863	2.845351	chr12	31447606	31447734	LINE|L1|X9_LINE	+	chr12	31424568	31426751	DENND5B|ENST00000537061.1	-	31424568,31426292	31424687,31426751	0.750000
cardiac_muscle_cell	chr18	976636	976672	976648	+	High_confidence	12	12	49	1.085609	3.672400	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976696	1159311	AP005328.1|ENST00000579835.5	+	976696,1061462,1133842,1137813,1159178	976895,1061535,1133894,1137864,1159311	0.632653
cardiac_muscle_cell	chr18	976392	976497	976438	+	High_confidence	20	23	187	4.143039	6.187771	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976588	1159391	AP005328.1|ENST00000577719.5	+	976588,1133842,1137813,1159178	976895,1133952,1137864,1159391	0.502674
cardiac_muscle_cell	chr3	98733090	98733131	98733090	-	High_confidence	4	4	26	0.576037	3.923856	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98714332	98732651	ST3GAL6-AS1|NR_046683.1	-	98714332,98715375,98715649,98718418,98732425	98714498,98715521,98715777,98718521,98732651	0.807692
cardiac_muscle_cell	chr13	20833834	20833852	20833851	-	RAMPAGE_only	9	9	31	0.686814	4.349200	chr13	20833640	20833897	LINE|L2|L2b	-	chr13	20777356	20832405	MSTRG.9455.7	-	20777356,20786964,20787480,20788485,20790461,20796075,20796763,20799164,20800155,20800830,20807456,20808435,20809082,20809790,20821703,20822131,20831751	20783919,20787057,20787598,20788616,20790580,20796256,20797057,20799339,20800325,20800990,20807634,20808581,20809225,20809967,20821878,20822289,20832405	0.903226
cardiac_muscle_cell	chr21	39390319	39390348	39390347	+	RAMPAGE_only	4	4	11	0.243708	2.913977	chr21	39390171	39390648	LTR|ERVL|LTR42	-	chr21	39387790	39397254	WRB|ENST00000466787.1	+	39387790,39390697,39391768,39393165,39396865	39387855,39391476,39391836,39393280,39397254	0.818182
cardiac_muscle_cell	chr8	83978296	83978342	83978324	+	RAMPAGE_only	8	9	61	1.351473	4.496364	chr8	83978365	83978955	LINE|L1|L1MC3	+	chr8	83912712	83987583	MSTRG.35074.4	+	83912712,83967327,83974632,83978571,83979924	83912835,83974590,83976926,83978766,83987583	0.672131
cardiac_muscle_cell	chr18	976722	976772	976771	+	High_confidence	7	8	32	0.708969	4.218139	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976696	1159311	AP005328.1|ENST00000579835.5	+	976696,1061462,1133842,1137813,1159178	976895,1061535,1133894,1137864,1159311	0.562500
cardiac_muscle_cell	chr19	9620978	9621000	9620978	+	High_confidence	3	3	10	0.221553	2.947703	chr19	9620760	9621007	SINE|Alu|AluSx	+	chr19	9621290	9633885	ZNF561-AS1|ENST00000591932.5	+	9621290,9632227,9633459	9621350,9632417,9633885	0.700000
cardiac_muscle_cell	chr11	87219503	87219511	87219503	+	RAMPAGE_only	5	5	11	0.243708	2.845351	chr11	87219487	87219730	LTR|ERVL-MaLR|MLT1B	-	chr11	87042811	87328754	MSTRG.6739.7	+	87042811,87067693,87091361,87157340,87236637,87295781,87302295,87305935,87309504,87313424,87314470,87318136,87319309,87321200	87043098,87067821,87091395,87157406,87236684,87295823,87302442,87306005,87309672,87313488,87314547,87318235,87319377,87328754	0.909091
cardiac_muscle_cell	chr2	30567597	30567603	30567602	+	RAMPAGE_only	19	19	36	0.797590	4.551462	chr2	30567334	30567874	LTR|ERV1|LTR38A1	+	chr2	30447256	30644225	LCLAT1|ENST00000309052.8	+	30447256,30459551,30525586,30533115,30562145,30568059,30640116	30447404,30459722,30525755,30533314,30562292,30568176,30644225	0.527778
cardiac_muscle_cell	chr12	96316387	96316408	96316387	-	RAMPAGE_only	3	3	10	0.221553	2.921928	chr12	96315942	96321971	LINE|L1|L1PA2	+	chr12	96289257	96303125	CDK17|ENST00000553042.1	-	96289257,96294998,96297269,96297626,96298868,96300303,96303040	96289287,96295122,96297332,96297721,96298983,96300360,96303125	0.600000
cardiac_muscle_cell	chr16	27229403	27229410	27229403	-	RAMPAGE_only	2	2	8	0.177242	2.521641	chr16	27229101	27229466	LINE|L2|L2b	+	chr16	27225024	27268741	NSMCE1|ENST00000565070.5	-	27225024,27225725,27233000,27234187,27235177,27257434,27268705	27225236,27226836,27233147,27234265,27235299,27257581,27268741	0.625000
cardiac_muscle_cell	chr4	158841801	158841813	158841812	+	RAMPAGE_only	6	7	14	0.310174	3.093069	chr4	158841566	158842041	LTR|ERVL|LTR75	+	chr4	158832079	158908015	MSTRG.28052.6	+	158832079,158833527,158833800,158835404,158851320,158859056,158859196,158859577,158861341,158861606,158868101,158870312,158891445,158895749,158904465	158832138,158833628,158833890,158835476,158851450,158859145,158859258,158859666,158861488,158861776,158869428,158870469,158891646,158895865,158908015	0.571429
cardiac_muscle_cell	chr2	95121533	95121558	95121537	-	High_confidence	9	9	32	0.708969	4.179229	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.843750
cardiac_muscle_cell	chr1	77227398	77227407	77227398	+	RAMPAGE_only	3	4	6	0.132932	2.584963	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888514	77943895	NEXN|NM_144573.3	+	77888514,77916054,77917565,77917959,77918124,77925187,77926413,77926715,77929315,77933281,77935822,77942022,77942460	77888759,77916133,77917757,77918038,77918273,77925229,77926611,77926892,77929504,77933479,77936044,77942208,77943895	0.666667
cardiac_muscle_cell	chr7	2242922	2242923	2242922	+	High_confidence	48	48	48	1.063454	4.795915	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
cardiac_muscle_cell	chr1	201360453	201360454	201360453	-	RAMPAGE_only	92	92	99	2.193373	3.858413	chr1	201360361	201360542	SINE|MIR|MIR	-	chr1	201359007	201363350	TNNT2|ENST00000476888.5	-	201359007,201359622,201361278,201361950,201362385,201363295	201359255,201359663,201361369,201362022,201362394,201363350	0.939394
cardiac_muscle_cell	chr16	4355592	4355593	4355592	-	High_confidence	572	582	582	12.894377	5.569264	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.936426
cardiac_muscle_cell	chr12	83472379	83472432	83472431	-	High_confidence	11484	11769	20690	458.392891	5.854355	chr12	83472101	83472741	LTR|ERVL-MaLR|MLT1E2	+	chr12	83456452	83472520	MSTRG.8728.1	-	83456452,83472259	83458952,83472520	0.985162
cardiac_muscle_cell	chr5	41456608	41456628	41456608	-	RAMPAGE_only	32	34	100	2.215529	5.206447	chr5	41456571	41456939	LTR|ERVL-MaLR|MLT1A0	+	chr5	41306953	41510601	PLCXD3|ENST00000377801.7	-	41306953,41381825,41510423	41313770,41382534,41510601	0.790000
cardiac_muscle_cell	chr19	52893391	52893416	52893391	-	RAMPAGE_only	2	2	7	0.155087	2.521641	chr19	52893383	52893654	SINE|Alu|AluSc	+	chr19	52876171	52891346	ZNF320|NM_207333.2	-	52876171,52888126,52890240,52891228	52881983,52888253,52890328,52891346	0.571429
cardiac_muscle_cell	chr22	30971680	30971763	30971705	+	High_confidence	5	5	35	0.775435	4.493150	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30976063	MSTRG.24008.21	+	30971438,30972047,30975169	30971779,30973601,30976063	0.971429
cardiac_muscle_cell	chr4	110411253	110411277	110411253	+	RAMPAGE_only	2	2	9	0.199398	2.500000	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110365732	110506258	ENPEP|ENST00000510961.1	+	110365732,110488540,110491032,110500028,110506182	110365804,110488682,110491164,110500163,110506258	0.555556
cardiac_muscle_cell	chr14	71002043	71002098	71002097	+	RAMPAGE_only	41	50	119	2.636479	5.400356	chr14	71001845	71002099	LTR|ERVL-MaLR|MLT1J	-	chr14	70907404	71115382	PCNX1|NM_014982.2	+	70907404,70946914,70962225,70968197,70969020,70976941,70988566,70995740,71009633,71011491,71012984,71019008,71023199,71026116,71026771,71028699,71033428,71033930,71036064,71045132,71046963,71047806,71050651,71051882,71055503,71057508,71073544,71076188,71088329,71089191,71101989,71103394,71105234,71108603,71109451,71109794	70908003,70947123,70962331,70968243,70969110,70978648,70988699,70995925,71009724,71011549,71013202,71019162,71023232,71026288,71026882,71028791,71033538,71034036,71036157,71045283,71047105,71047984,71050760,71052012,71055562,71057724,71073798,71076419,71088430,71089342,71102220,71103669,71105440,71109046,71109592,71115382	0.504202
cardiac_muscle_cell	chr15	33194695	33194709	33194708	-	High_confidence	7	7	18	0.398795	3.197160	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.888889
cardiac_muscle_cell	chr3	58842535	58842539	58842538	-	RAMPAGE_only	6	6	10	0.221553	2.947703	chr3	58842154	58848179	LINE|L1|L1PA2	+	chr3	58742009	59049989	C3orf67|NM_198463.2	-	58742009,58753768,58806394,58831685,58863557,58866565,58867816,58869327,58870172,58884544,58913707,58937647,59039556,59046228,59047164,59049934	58742572,58753863,58806456,58831889,58863892,58866688,58867936,58869490,58870309,58884709,58913864,58937762,59039629,59046322,59047254,59049989	0.500000
cardiac_muscle_cell	chr7	33527354	33527397	33527396	+	RAMPAGE_only	4	4	16	0.354485	3.500000	chr7	33521747	33527773	LINE|L1|L1PA2	-	chr7	33533686	33605207	BBS9|ENST00000498189.1	+	33533686,33604864,33605194	33534176,33604975,33605207	0.562500
cardiac_muscle_cell	chr12	9065161	9065181	9065173	+	RAMPAGE_only	29	29	155	3.434070	4.964986	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9062771	9068668	MSTRG.7683.1	+	9062771	9068668	0.967742
cardiac_muscle_cell	chr12	121770002	121770015	121770014	+	RAMPAGE_only	4	4	13	0.288019	3.238901	chr12	121769747	121770100	LINE|L2|L2a	-	chr12	121755328	121776158	MSTRG.9215.5	+	121755328,121761648,121770906,121771487,121773420,121774657,121775061,121775608	121758986,121761738,121770972,121771549,121773513,121774722,121775130,121776158	0.692308
cardiac_muscle_cell	chr21	33945809	33945810	33945809	-	RAMPAGE_only	138	138	138	3.057430	4.222752	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
cardiac_muscle_cell	chr19	57279864	57279865	57279864	+	High_confidence	6	6	8	0.177242	2.521641	chr19	57279571	57279886	LINE|L2|L2a	+	chr19	57280050	57292534	ZNF460|ENST00000537645.5	+	57280050,57284550,57290698	57280124,57284677,57292534	0.625000
cardiac_muscle_cell	chrX	100593623	100593640	100593623	+	RAMPAGE_only	4	4	16	0.354485	3.625000	chrX	100593595	100593649	LINE|CR1|L3	+	chrX	100584801	100599885	TNMD|ENST00000373031.4	+	100584801,100585230,100593894,100594260,100597503,100599015,100599507	100585066,100585362,100594035,100594362,100597657,100599182,100599885	0.937500
cardiac_muscle_cell	chr2	177499706	177499729	177499706	+	RAMPAGE_only	5	5	13	0.288019	3.026987	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.769231
cardiac_muscle_cell	chr11	59944210	59944236	59944210	+	RAMPAGE_only	10	17	49	1.085609	4.622277	chr11	59944029	59944317	LTR|ERVL|LTR16A	-	chr11	59938431	59957480	OOSP1|ENST00000646685.1	+	59938431,59942846,59945168,59947732,59957194	59938530,59943028,59945266,59947862,59957480	0.755102
cardiac_muscle_cell	chr11	74493843	74493878	74493877	+	High_confidence	8	8	21	0.465261	3.141619	chr11	74493874	74494088	LINE|L2|L2a	-	chr11	74493384	74498533	LOC100287896|NM_001319240.1	+	74493384,74496648	74493973,74498533	0.809524
cardiac_muscle_cell	chr22	23705513	23705531	23705524	-	RAMPAGE_only	3	3	11	0.243708	2.721928	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23649212	23717267	MSTRG.23842.12	-	23649212,23649429,23652481,23652715,23652860,23653208,23659864,23683724,23686837,23690231,23695172,23705428,23709129,23709785,23714186,23715008,23717030	23649355,23649557,23652579,23652773,23652944,23653352,23660000,23683867,23686995,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717267	0.636364
cardiac_muscle_cell	chr11	9775665	9775711	9775675	+	High_confidence	567	589	1195	26.475568	7.204477	chr11	9775466	9776058	LTR|ERVL|MER21C	+	chr11	9775730	9808379	SBF2-AS1|ENST00000534671.1	+	9775730,9780375,9807847	9775765,9780575,9808379	0.810042
cardiac_muscle_cell	chr10	67387433	67387468	67387467	-	RAMPAGE_only	5	5	18	0.398795	3.292770	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	65912517	67665685	CTNNA3|NM_001127384.2	-	65912517,65966611,65988691,66069307,66103156,66280469,66379151,66520616,66621691,66766263,66775443,67180316,67219606,67521841,67539502,67606856,67647414,67665540	65920617,65966746,65988797,66069489,66103249,66280621,66379352,66520773,66621784,66766416,66775524,67180520,67219870,67521961,67539669,67607049,67647518,67665685	0.666667
cardiac_muscle_cell	chr1	212792334	212792352	212792351	-	High_confidence	4	4	9	0.199398	3.000000	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.888889
cardiac_muscle_cell	chr8	74337194	74337195	74337194	+	RAMPAGE_only	15	16	16	0.354485	3.640224	chr8	74336923	74337350	LTR|ERVL|LTR16A	+	chr8	74350381	74366876	GDAP1|ENST00000220822.11	+	74350381,74351273,74360136,74361883,74362938,74363984	74350578,74351466,74360310,74361978,74363053,74366876	0.812500
cardiac_muscle_cell	chr6	26474335	26474348	26474345	+	RAMPAGE_only	31	37	77	1.705957	5.204714	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.636364
cardiac_muscle_cell	chr6	87210539	87210553	87210552	+	RAMPAGE_only	4	4	8	0.177242	2.750000	chr6	87210539	87210803	SINE|Alu|AluY	+	chr6	87204583	87264196	MSTRG.31445.8	+	87204583,87213330,87215902,87216298,87218595,87233324,87243474,87245502,87254649	87210807,87215142,87216057,87216377,87218731,87233527,87243611,87245644,87264196	0.625000
cardiac_muscle_cell	chr1	167937062	167937127	167937081	+	High_confidence	5	5	17	0.376640	3.454822	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167937152	167993330	DCAF6|ENST00000455334.5	+	167937152,167951799,167966628,167974829,167987494,167991203,167993225	167937252,167951861,167966721,167975015,167987608,167991339,167993330	1.000000
cardiac_muscle_cell	chr12	46266488	46266495	46266488	-	High_confidence	7	7	17	0.376640	3.690117	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.705882
cardiac_muscle_cell	chr16	61918689	61918703	61918689	-	High_confidence	6	8	15	0.332329	2.789898	chr16	61918303	61919817	LINE|L1|L1HS	+	chr16	61901391	61918714	CDH8|ENST00000577228.1	-	61901391,61918257	61901473,61918714	0.866667
cardiac_muscle_cell	chr4	110411199	110411230	110411229	+	RAMPAGE_only	3	3	8	0.177242	2.500000	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110365732	110506258	ENPEP|ENST00000510961.1	+	110365732,110488540,110491032,110500028,110506182	110365804,110488682,110491164,110500163,110506258	0.875000
cardiac_muscle_cell	chr6	118651542	118651602	118651592	-	High_confidence	63	63	466	10.324364	6.898994	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.965665
cardiac_muscle_cell	chr11	66372478	66372480	66372479	-	High_confidence	9	15	21	0.465261	3.916127	chr11	66372296	66372448	DNA|hAT-Tip100|ORSL-2b	-	chr11	66362520	66372476	SLC29A2|NM_001300868.1	-	66362520,66364224,66365935,66366125,66366430,66367463,66367771,66368536,66369059,66369368,66371243,66371562,66372009,66372357	66363547,66364424,66366021,66366231,66366564,66367548,66367869,66368671,66369199,66369532,66371325,66371646,66372265,66372476	0.714286
cardiac_muscle_cell	chr17	35187606	35187754	35187648	+	RAMPAGE_only	6	8	66	1.462249	5.127283	chr17	35187192	35187720	LTR|ERVL-MaLR|MLT1K	-	chr17	35148263	35189345	UNC45B|NM_001308281.1	+	35148263,35148972,35150047,35152892,35154573,35155295,35159374,35163994,35168060,35171321,35174241,35175967,35177016,35177494,35180558,35183426,35186298	35148431,35149009,35150223,35152982,35154741,35155464,35159545,35164166,35168361,35171462,35174369,35176034,35177130,35177610,35180676,35183582,35189345	1.000000
cardiac_muscle_cell	chr3	134485387	134485463	134485443	-	High_confidence	94	104	676	14.976974	6.769823	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.924556
cardiac_muscle_cell	chr10	42614297	42614303	42614297	-	RAMPAGE_only	3	3	7	0.155087	2.584963	chr10	42613992	42614593	LINE|L1|L1MC3	+	chr10	42589106	42632912	ZNF33B|ENST00000613419.4	-	42589106,42631928,42632294,42632903	42594699,42632024,42632439,42632912	0.857143
cardiac_muscle_cell	chr3	42407916	42407917	42407916	-	High_confidence	21	21	31	0.686814	4.195816	chr3	42407891	42407978	SINE|MIR|MIR	+	chr3	42397096	42407508	LYZL4|ENST00000470991.1	-	42397096,42404045,42406845,42407112,42407399	42397334,42404124,42406998,42407172,42407508	0.903226
cardiac_muscle_cell	chrX	283484	283509	283491	+	High_confidence	4	5	21	0.465261	4.021928	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.809524
cardiac_muscle_cell	chr7	10973332	10973336	10973335	+	High_confidence	24	24	42	0.930522	4.945772	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.857143
cardiac_muscle_cell	chr5	64802093	64802129	64802102	+	RAMPAGE_only	65	68	201	4.453213	6.247997	chr5	64802007	64802808	LINE|L2|L2b	-	chr5	64800244	64804907	CWC27|ENST00000506168.1	+	64800244,64801301,64804228	64800327,64801332,64804907	0.587065
cardiac_muscle_cell	chr5	109383417	109383423	109383422	-	High_confidence	5	6	11	0.243708	2.663533	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.727273
cardiac_muscle_cell	chr7	73683420	73683443	73683420	-	High_confidence	96	97	398	8.817804	6.416622	chr7	73683365	73683430	LINE|RTE-BovB|MamRTE1	+	chr7	73680917	73683451	DNAJC30|NM_032317.2	-	73680917	73683451	0.989950
cardiac_muscle_cell	chr1	15507442	15507457	15507442	-	RAMPAGE_only	3	3	11	0.243708	3.277613	chr1	15507404	15507600	LINE|L2|L2c	+	chr1	15492365	15524192	CASP9|ENST00000400777.7	-	15492365,15493891,15495272,15504610,15505989,15506898,15507872,15518109,15524068	15493035,15494001,15495452,15504758,15506079,15507133,15507907,15518395,15524192	1.000000
cardiac_muscle_cell	chr14	103778755	103778791	103778755	-	RAMPAGE_only	3	4	17	0.376640	3.030639	chr14	103778558	103778705	SINE|Alu|AluJr	-	chr14	103733194	103797488	PPP1R13B|ENST00000647748.1	-	103733194,103736002,103737693,103738678,103738885,103739823,103741789,103742653,103746372,103749793,103752999,103754069,103757649,103778744,103784794,103797370	103735195,103736202,103737860,103738812,103739023,103740593,103742291,103742823,103746553,103749934,103753196,103754238,103757751,103778821,103784914,103797488	0.588235
cardiac_muscle_cell	chr12	79045146	79045202	79045155	+	High_confidence	19	19	52	1.152075	4.593611	chr12	79039621	79045645	LINE|L1|L1PA2	-	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.884615
cardiac_muscle_cell	chr8	12507562	12507608	12507562	-	RAMPAGE_only	2	2	12	0.265863	2.918296	chr8	12504803	12508690	LINE|L1|L1PA4	-	chr8	12506079	12601376	MSTRG.34390.4	-	12506079,12511121,12518771,12601157	12509800,12511257,12518955,12601376	1.000000
cardiac_muscle_cell	chr15	75626279	75626305	75626304	-	High_confidence	8	9	13	0.288019	3.238901	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.846154
cardiac_muscle_cell	chr15	70942791	70942811	70942804	+	RAMPAGE_only	5	6	20	0.443106	3.431624	chr15	70942582	70942814	LTR|ERV1|MER4E1	-	chr15	70936527	71050075	LRRC49|ENST00000560158.6	+	70936527,70980100,70984093,71008378,71009806,71012803,71037178,71049408	70936822,70980184,70984257,71008616,71009992,71012913,71037332,71050075	0.750000
cardiac_muscle_cell	chr2	200888587	200888628	200888587	-	High_confidence	11	11	28	0.620348	3.892725	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.928571
cardiac_muscle_cell	chr8	74199404	74199405	74199404	+	High_confidence	10	10	10	0.221553	2.721928	chr8	74199086	74199513	LINE|L2|L2a	+	chr8	74199395	74208441	AC087627.1|ENST00000522339.2	+	74199395,74207358,74207720	74199532,74207493,74208441	0.800000
cardiac_muscle_cell	chr9	20658568	20658624	20658568	+	High_confidence	7	7	62	1.373628	5.081728	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.580645
cardiac_muscle_cell	chr3	15738511	15738512	15738511	+	High_confidence	56	59	59	1.307162	4.133484	chr3	15738158	15739435	LTR|ERVK|MER11B	-	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.983051
cardiac_muscle_cell	chr19	44914321	44914410	44914321	+	High_confidence	36	39	116	2.570013	5.087316	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.982759
cardiac_muscle_cell	chr7	66292483	66292507	66292483	+	RAMPAGE_only	5	5	18	0.398795	3.947703	chr7	66286853	66292884	LINE|L1|L1HS	-	chr7	66996804	67239520	TYW1|NM_018264.3	+	66996804,66998064,66998816,67009582,67014366,67017852,67024899,67049948,67055834,67067284,67083429,67098540,67117482,67183125,67195169,67238307	66996982,66998195,66998954,67009684,67014561,67018143,67025022,67050066,67055887,67067403,67083539,67098718,67117618,67183236,67195337,67239520	0.666667
cardiac_muscle_cell	chr1	212233406	212233449	212233424	-	RAMPAGE_only	6	8	27	0.598193	3.884155	chr1	212233221	212233468	LINE|CR1|L3b	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	0.925926
cardiac_muscle_cell	chr8	127312039	127312079	127312069	-	RAMPAGE_only	31	31	121	2.680790	5.419165	chr8	127311575	127315431	LINE|L1|L1HS	+	chr8	127289816	127421374	CASC8|ENST00000501396.5	-	127289816,127323014,127420828	127290060,127323154,127421374	0.537190
cardiac_muscle_cell	chr6	126020312	126020340	126020312	+	RAMPAGE_only	10	10	53	1.174230	4.060051	chr6	126019803	126020820	DNA|TcMar-Tigger|Tigger12	+	chr6	125986552	126038888	MSTRG.31863.8	+	125986552,125993756,125995966,125998052,125998222,125998549,125999456,126008391,126011252,126012770,126012969,126021159,126038704	125986879,125993822,125996040,125998134,125998315,125998684,125999613,126008472,126011417,126012852,126013101,126021280,126038888	0.509434
cardiac_muscle_cell	chr1	212234693	212234700	212234693	-	High_confidence	7	7	12	0.265863	3.095795	chr1	212234586	212234675	DNA|hAT-Charlie|Charlie24	-	chr1	212225277	212234736	LOC101929541|NR_125983.1	-	212225277,212230202,212234502	212225513,212230259,212234736	0.916667
cardiac_muscle_cell	chrX	131756612	131756645	131756612	-	High_confidence	4	4	14	0.310174	2.835238	chrX	131756588	131756710	SINE|Alu|AluJr	-	chrX	131694860	131755709	FIRRE|ENST00000648028.1	-	131694860,131749305,131755597	131695913,131749458,131755709	0.785714
cardiac_muscle_cell	chr9	132319548	132319566	132319548	-	RAMPAGE_only	2	3	7	0.155087	2.521641	chr9	132319064	132319644	LINE|L2|L2a	+	chr9	132261355	132311856	SETX|ENST00000436441.5	-	132261355,132269402,132269614,132271709,132275255,132277059,132278069,132281466,132283263,132286422,132288235,132288549,132295871,132296886,132298079,132300629,132311756	132264985,132269489,132269702,132271808,132275420,132277152,132278257,132281574,132283413,132286494,132288351,132288651,132296028,132297054,132298312,132300803,132311856	0.571429
cardiac_muscle_cell	chr3	33864068	33864112	33864090	+	RAMPAGE_only	5	6	29	0.642503	3.556657	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.965517
cardiac_muscle_cell	chr19	49086488	49086547	49086546	+	High_confidence	11	11	42	0.930522	4.898153	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.523810
cardiac_muscle_cell	chr15	57402037	57402038	57402037	+	RAMPAGE_only	6	6	6	0.132932	2.584963	chr15	57402062	57402472	LTR|ERVL-MaLR|MSTB	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
cardiac_muscle_cell	chr1	83263770	83263799	83263790	-	RAMPAGE_only	2	2	9	0.199398	3.000000	chr1	83263607	83269631	LINE|L1|L1PA3	+	chr1	83019431	83182602	MSTRG.1560.1	-	83019431,83182169	83021428,83182602	0.777778
cardiac_muscle_cell	chr6	43025277	43025308	43025307	+	High_confidence	7	7	23	0.509572	3.663533	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.826087
cardiac_muscle_cell	chr8	12521394	12521414	12521394	+	RAMPAGE_only	2	2	8	0.177242	2.500000	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437143	12566779	MSTRG.34389.1	+	12437143,12438163,12440968,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566779	0.875000
cardiac_muscle_cell	chr3	132285531	132285558	132285531	-	High_confidence	11	12	57	1.262851	5.301931	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.561404
cardiac_muscle_cell	chr5	43307787	43307819	43307818	-	RAMPAGE_only	3	3	13	0.288019	2.565448	chr5	43307757	43307827	SINE|tRNA|LFSINE_Vert	+	chr5	43287469	43313224	HMGCS1|NM_001324219.1	-	43287469,43292473,43292847,43294055,43294690,43295751,43297001,43298008,43298517,43313021	43291220,43292637,43292973,43294162,43294861,43295917,43297166,43298134,43298975,43313224	1.000000
cardiac_muscle_cell	chr8	9249411	9249412	9249411	+	High_confidence	16	16	19	0.420950	3.281036	chr8	9249335	9249524	LTR|ERV1|LTR2C	+	chr8	9249603	9413714	AC022784.1|ENST00000520255.5	+	9249603,9325901,9361365,9413648	9249940,9326303,9361423,9413714	0.631579
cardiac_muscle_cell	chr7	44828314	44828566	44828465	-	RAMPAGE_only	14	14	147	3.256827	5.764204	chr7	44828400	44828601	SINE|MIR|MIRb	-	chr7	44826790	44848063	MSTRG.32888.1	-	44826790,44833232,44835528,44840898,44843276,44847968	44832808,44834562,44835658,44841012,44843354,44848063	1.000000
cardiac_muscle_cell	chr8	12522463	12522478	12522477	+	RAMPAGE_only	7	7	18	0.398795	3.377444	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437143	12566779	MSTRG.34389.1	+	12437143,12438163,12440968,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566779	1.000000
cardiac_muscle_cell	chr15	78245687	78245688	78245687	-	High_confidence	15	15	17	0.376640	3.286896	chr15	78245271	78246702	LTR|ERV1|LTR12C	-	chr15	78170913	78245688	ACSBG1|ENST00000560817.5	-	78170913,78173592,78174384,78178613,78179549,78180754,78181968,78182465,78182704,78245268	78171529,78173839,78174524,78178831,78179780,78180936,78182145,78182615,78182785,78245688	0.941176
cardiac_muscle_cell	chr3	25790466	25790471	25790470	+	High_confidence	12	12	20	0.443106	3.584184	chr3	25790363	25790519	SINE|MIR|MIR3	-	chr3	25790479	25791841	OXSM|ENST00000449808.1	+	25790479,25790989,25791769	25790816,25791315,25791841	0.800000
cardiac_muscle_cell	chr4	84299222	84299271	84299270	-	High_confidence	16	16	40	0.886211	4.903056	chr4	84298780	84304810	LINE|L1|L1PA2	+	chr4	83968081	84299169	LOC101928978|NR_125909.1	-	83968081,84012054,84148046,84149218,84243110,84284205,84286668,84293219,84299123	83970110,84012119,84148130,84149256,84243216,84284326,84286827,84293409,84299169	0.550000
cardiac_muscle_cell	chr3	132285719	132285742	132285719	-	High_confidence	15	19	41	0.908367	4.903056	chr3	132285620	132285930	LTR|ERV1|MER65C	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.560976
cardiac_muscle_cell	chr14	90258074	90258080	90258079	+	RAMPAGE_only	7	7	13	0.288019	3.180833	chr14	90258077	90258330	SINE|MIR|MIRb	+	chr14	90256577	90272550	PSMC1|ENST00000543772.2	+	90256577,90259159,90263317,90263661,90264040,90265069,90268223,90269396,90270197,90272272	90256600,90259213,90263442,90263847,90264169,90265166,90268413,90269548,90270352,90272550	0.769231
cardiac_muscle_cell	chr3	68910118	68910125	68910124	-	RAMPAGE_only	5	9	14	0.310174	3.026987	chr3	68909732	68910310	LTR|ERVL-MaLR|MLT1F2	-	chr3	68731763	68932610	FAM19A4|NM_001005527.2	-	68731763,68739074,68752862,68880729,68885174,68932321	68733153,68739199,68753018,68880845,68885310,68932610	0.928571
cardiac_muscle_cell	chr16	67183392	67183407	67183406	-	High_confidence	4	4	11	0.243708	2.663533	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183941	MSTRG.14170.2	-	67175603,67178009,67178198,67179429,67179814,67180040,67181605,67183261,67183871	67176975,67178107,67178504,67179562,67179958,67180666,67181697,67183455,67183941	0.818182
cardiac_muscle_cell	chr1	222715266	222715267	222715266	+	RAMPAGE_only	12	12	13	0.288019	2.751629	chr1	222715165	222715305	DNA|hAT-Charlie|MER5A1	+	chr1	222713400	222727209	BROX|ENST00000489191.1	+	222713400,222715144,222718924,222719262,222724091,222725449,222727167	222713416,222715269,222719031,222719359,222724164,222725555,222727209	0.846154
cardiac_muscle_cell	chr5	151958804	151958834	151958804	+	High_confidence	2	2	11	0.243708	2.921928	chr5	151958688	151959037	LTR|ERVL-MaLR|THE1B	+	chr5	151958897	152270445	LINC01933|ENST00000524034.5	+	151958897,152267264,152270194	151958954,152267355,152270445	0.636364
cardiac_muscle_cell	chr5	151958866	151958867	151958866	+	High_confidence	14	17	20	0.443106	3.484184	chr5	151958688	151959037	LTR|ERVL-MaLR|THE1B	+	chr5	151958897	152270445	LINC01933|ENST00000524034.5	+	151958897,152267264,152270194	151958954,152267355,152270445	0.900000
cardiac_muscle_cell	chr3	132259862	132259868	132259862	-	RAMPAGE_only	4	4	11	0.243708	3.095795	chr3	132259704	132260165	LTR|ERVL|LTR33	+	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.636364
cardiac_muscle_cell	chr11	67620234	67620280	67620247	+	High_confidence	24	32	112	2.481392	5.593776	chr11	67618852	67620425	LTR|ERV1|LTR12C	+	chr11	67619993	67640431	MSTRG.6357.4	+	67619993,67636532	67628062,67640431	0.964286
cardiac_muscle_cell	chr12	21395493	21395501	21395500	-	High_confidence	39	39	63	1.395783	4.347625	chr12	21395009	21401039	LINE|L1|L1PA2	+	chr12	21264599	21395437	SLCO1A2|NM_134431.3	-	21264599,21274468,21275359,21292163,21293944,21295596,21297403,21300347,21301170,21304426,21306881,21314548,21318781,21334587,21374398,21394905	21269767,21274586,21275424,21292336,21294110,21295792,21297568,21300569,21301269,21304573,21306988,21314681,21318923,21334709,21374525,21395437	0.904762
cardiac_muscle_cell	chr3	33453815	33453833	33453832	+	RAMPAGE_only	3	3	9	0.199398	2.725481	chr3	33453276	33454987	LTR|ERV1|LTR12C	+	chr3	33446611	33458005	MSTRG.24768.1	+	33446611,33453035	33447137,33458005	1.000000
cardiac_muscle_cell	chr14	32075810	32075822	32075821	+	High_confidence	4	4	11	0.243708	2.732159	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076113	32090780	ARHGAP5|ENST00000555814.1	+	32076113,32076457,32090501	32076217,32076657,32090780	0.636364
cardiac_muscle_cell	chr19	35399538	35399554	35399553	+	RAMPAGE_only	4	4	10	0.221553	2.521928	chr19	35399184	35399804	LTR|ERV1|MER49	+	chr19	35405606	35416840	LINC01531|ENST00000536898.5	+	35405606,35406584,35409285,35411161,35416478	35405681,35409151,35409472,35411282,35416840	1.000000
cardiac_muscle_cell	chr6	79631273	79631329	79631302	+	High_confidence	436	437	1450	32.125166	6.936868	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.979310
cardiac_muscle_cell	chr19	3575583	3575629	3575628	+	High_confidence	4	4	18	0.398795	3.461320	chr19	3575668	3575971	SINE|Alu|AluSx1	+	chr19	3576615	3579083	HMG20B|ENST00000585900.1	+	3576615,3576891,3577980,3578701	3576625,3577107,3578113,3579083	0.611111
cardiac_muscle_cell	chr5	81616533	81616550	81616533	-	High_confidence	8	9	15	0.332329	3.640224	chr5	81616090	81622140	LINE|L1|L1HS	+	chr5	81442650	81616473	SSBP2|ENST00000509743.6	-	81442650,81446867,81448789,81461054,81466973,81473699,81474495,81489249,81513627,81615472,81616348	81442723,81446922,81448825,81461103,81467041,81473770,81474562,81489309,81513717,81615557,81616473	0.666667
cardiac_muscle_cell	chr3	46827254	46827380	46827332	-	RAMPAGE_only	10	10	83	1.838889	5.445890	chr3	46827251	46827474	LTR|ERV1|MER31A	+	chr3	46712114	46855002	MSTRG.24954.1	-	46712114,46712900,46714217,46715534,46717436,46717718,46719943,46748624,46754487,46756041,46812221,46827785,46844137,46848516	46712482,46713067,46714501,46715697,46717637,46718306,46720003,46748651,46754648,46756629,46827765,46836203,46848467,46855002	1.000000
cardiac_muscle_cell	chr1	75376017	75376031	75376017	-	RAMPAGE_only	9	9	19	0.420950	3.300559	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.947368
cardiac_muscle_cell	chr1	201427175	201427176	201427175	-	RAMPAGE_only	3477	3485	3493	77.388418	6.775050	chr1	201427119	201427295	SINE|MIR|MIR	-	chr1	201408863	201429866	TNNI1|ENST00000336092.8	-	201408863,201410325,201411356,201413031,201414517,201415212,201417115,201417782,201421672,201427174,201428837,201429698	201409250,201410435,201411533,201413121,201414649,201415254,201417119,201417812,201421726,201427293,201429274,201429866	0.981964
cardiac_muscle_cell	chr5	95706448	95706461	95706460	+	RAMPAGE_only	6	8	12	0.265863	2.855389	chr5	95706209	95706598	LTR|ERVL-MaLR|MSTA	+	chr5	95717632	95756093	RHOBTB3|ENST00000504949.1	+	95717632,95731858,95736888,95748332,95752238,95755395	95717765,95732084,95737075,95748487,95752350,95756093	1.000000
cardiac_muscle_cell	chr11	114405785	114405786	114405785	+	RAMPAGE_only	11	12	15	0.332329	2.923231	chr11	114405747	114405830	LINE|CR1|X6B_LINE	-	chr11	114400673	114408123	RBM7|ENST00000545678.1	+	114400673,114405705,114407444	114400767,114405799,114408123	0.733333
cardiac_muscle_cell	chr1	89198311	89198330	89198329	+	High_confidence	19	19	42	0.930522	4.927799	chr1	89197862	89198421	LTR|ERV1|LTR6A	-	chr1	89198713	89207040	AC099063.4|ENST00000641099.1	+	89198713,89205783	89199058,89207040	0.666667
cardiac_muscle_cell	chr1	200411676	200411691	200411683	+	High_confidence	162	165	564	12.495582	6.397810	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411693	200478360	AC104461.1|ENST00000647823.1	+	200411693,200444617,200472040,200473908,200477967	200411962,200444945,200472119,200474186,200478360	0.785461
cardiac_muscle_cell	chr17	60887251	60887264	60887255	+	High_confidence	5	5	14	0.310174	3.182006	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.500000
cardiac_muscle_cell	chr4	173369515	173369534	173369515	-	High_confidence	13	15	46	1.019143	4.276082	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.543478
cardiac_muscle_cell	chr6	76877074	76877085	76877074	-	High_confidence	44	46	75	1.661647	5.638309	chr6	76875759	76877075	LINE|L1|L1HS	-	chr6	76874103	76877835	MSTRG.31300.1	-	76874103	76877835	0.973333
cardiac_muscle_cell	chrX	107156143	107156154	107156153	-	RAMPAGE_only	5	5	16	0.354485	3.240224	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.500000
cardiac_muscle_cell	chr4	127656232	127656263	127656232	+	RAMPAGE_only	3	3	10	0.221553	2.646439	chr4	127650220	127656245	LINE|L1|L1PA2	-	chr4	127632965	127716479	INTU|ENST00000503952.5	+	127632965,127643520,127656635,127663380,127669035,127674123,127684408,127685441,127687740,127700009,127704227,127705590,127706486,127708570,127710912,127713935,127716324	127633180,127644056,127656721,127663584,127669154,127674213,127684486,127685569,127687867,127700063,127704290,127705812,127706969,127708668,127711102,127714093,127716479	1.000000
cardiac_muscle_cell	chr12	110936582	110936585	110936584	+	High_confidence	613	910	1177	26.076773	6.323715	chr12	110936431	110936780	LTR|ERVL-MaLR|THE1D	+	chr12	110936601	110937451	LINC01405|ENST00000331096.2	+	110936601,110937184	110936698,110937451	0.798641
cardiac_muscle_cell	chr3	53495039	53495048	53495039	+	High_confidence	2	2	8	0.177242	2.750000	chr3	53495032	53495170	LINE|L2|L2a	+	chr3	53495048	53812465	CACNA1D|NM_000720.3	+	53495048,53497151,53501614,53650778,53660132,53665659,53666338,53673712,53702640,53718300,53718681,53719754,53722313,53723433,53723791,53726878,53730441,53731076,53732015,53732814,53735373,53740279,53743010,53744739,53745623,53745822,53747301,53749267,53751748,53753571,53761997,53769972,53770423,53772832,53774586,53775885,53776602,53776859,53780025,53781565,53786821,53800248,53801057,53802146,53803422,53804982,53808648,53809977,53811112	53495233,53497461,53501720,53650918,53660275,53665812,53666535,53673816,53702810,53718388,53718741,53719781,53722474,53723659,53723999,53726999,53730556,53731146,53732082,53732962,53735503,53740339,53743117,53744827,53745731,53745875,53747448,53749469,53751907,53753682,53762081,53770017,53770552,53772898,53774678,53776045,53776730,53776956,53780128,53781667,53786952,53800365,53801425,53802173,53803572,53805146,53808770,53810298,53812465	1.000000
cardiac_muscle_cell	chr22	30753025	30753026	30753025	+	RAMPAGE_only	32	32	46	1.019143	4.570354	chr22	30752589	30753102	LTR|ERV1|MER4D1	-	chr22	30764252	30907824	OSBP2|NM_001282740.1	+	30764252,30870428,30887425,30888222,30889179,30889489,30890727,30893121,30893462,30893637,30893816,30905836,30906196	30764392,30870682,30887618,30888340,30889234,30889636,30890973,30893242,30893566,30893733,30894001,30906069,30907824	0.782609
cardiac_muscle_cell	chrX	107364817	107364836	107364827	-	RAMPAGE_only	5	5	18	0.398795	3.130718	chrX	107364336	107370349	LINE|L1|L1PA2	+	chrX	107123426	107206440	NUP62CL|NR_033676.1	-	107123426,107147742,107153171,107153453,107167648,107175088,107206272	107124332,107147809,107153306,107153503,107167784,107175193,107206440	0.833333
cardiac_muscle_cell	chr9	129208604	129208620	129208604	+	High_confidence	19	20	83	1.838889	5.372259	chr9	129208534	129208778	LINE|L2|L2c	+	chr9	129208504	129210449	MSTRG.37026.3	+	129208504,129208868	129208704,129210449	0.734940
cardiac_muscle_cell	chr1	25244078	25244184	25244109	-	High_confidence	18	21	122	2.702945	4.173846	chr1	25244059	25244116	SINE|Alu|Alu	-	chr1	25242248	25244105	RSRP1|ENST00000569495.5	-	25242248,25242538,25243549	25242426,25242705,25244105	0.983607
cardiac_muscle_cell	chr7	39013062	39013109	39013108	+	High_confidence	6	8	26	0.576037	4.469670	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.692308
cardiac_muscle_cell	chr4	185620090	185620100	185620090	-	RAMPAGE_only	5	6	25	0.553882	3.914866	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.720000
cardiac_muscle_cell	chr10	71219585	71219586	71219585	-	High_confidence	7	7	10	0.221553	2.947703	chr10	71219245	71219680	LTR|ERVL|MLT2A1	-	chr10	71217223	71219653	MSTRG.4322.1	-	71217223,71217993,71218999,71219319	71217635,71218040,71219046,71219653	0.600000
cardiac_muscle_cell	chr13	29647246	29647293	29647246	+	High_confidence	13	15	52	1.152075	4.699687	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.692308
cardiac_muscle_cell	chr9	69372490	69372574	69372530	+	RAMPAGE_only	3	5	26	0.576037	3.268929	chr9	69372181	69373080	LINE|L1|L1MB2	-	chr9	69324795	69388445	MSTRG.36271.5	+	69324795,69336212,69371498,69377369,69377610,69383629,69383946,69385794,69388157	69325723,69336269,69375864,69377477,69377744,69383735,69384025,69385947,69388445	1.000000
cardiac_muscle_cell	chr17	75262006	75262011	75262010	+	High_confidence	2	2	7	0.155087	2.584963	chr17	75262042	75262134	SINE|MIR|MIRc	+	chr17	75261960	75266084	MRPS7|ENST00000583407.1	+	75261960,75262462,75262803,75263339,75265701	75261983,75262688,75262867,75263507,75266084	0.857143
cardiac_muscle_cell	chr1	35145047	35145184	35145082	-	RAMPAGE_only	17	17	155	3.434070	4.757977	chr1	35144755	35145857	LTR|ERV1|HERV3-int	-	chr1	35141514	35146435	AL590434.1|ENST00000641402.1	-	35141514,35144866,35146298	35143033,35145096,35146435	1.000000
cardiac_muscle_cell	chr7	103888749	103888773	103888749	-	RAMPAGE_only	5	5	13	0.288019	3.392747	chr7	103888723	103888803	DNA|hAT-Tip100|MER91A	-	chr7	103471783	103989516	RELN|ENST00000428762.5	-	103471783,103478388,103482872,103483652,103486196,103489741,103490667,103491952,103495722,103496525,103497819,103498076,103500744,103503015,103510850,103515184,103519322,103522021,103523390,103535315,103539077,103540196,103542730,103545123,103551066,103553460,103553659,103556976,103557964,103561531,103561812,103565277,103566223,103566600,103572183,103574091,103575547,103589595,103593681,103594320,103596455,103603303,103604345,103610694,103611610,103629939,103635424,103636234,103640542,103650273,103651660,103652550,103654092,103661375,103682115,103697852,103700909,103723139,103728110,103749425,103753181,103776556,103833536,103917074,103989130	103472908,103478394,103482971,103483850,103486416,103489899,103490829,103492026,103495898,103496768,103497926,103498252,103500922,103503230,103511005,103515441,103519516,103522199,103523531,103535484,103539327,103540455,103542878,103545344,103551296,103553563,103553831,103557159,103558049,103561709,103561953,103565551,103566412,103566759,103572260,103574299,103575705,103589828,103593882,103594492,103596661,103603490,103604483,103610807,103611803,103630176,103635586,103636468,103640609,103650383,103651789,103652759,103654205,103661527,103682261,103698093,103701006,103723191,103728207,103749504,103753214,103776627,103833672,103917185,103989516	1.000000
cardiac_muscle_cell	chr2	130428509	130428534	130428523	-	High_confidence	34	34	148	3.278982	5.603972	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046259.1	-	130416749,130419070,130425090,130425913,130427703	130418298,130419245,130425158,130426038,130428546	0.972973
cardiac_muscle_cell	chr16	66408519	66408539	66408519	+	High_confidence	6	7	17	0.376640	3.875000	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.588235
cardiac_muscle_cell	chr12	96316433	96316434	96316433	-	RAMPAGE_only	9	9	11	0.243708	3.121928	chr12	96315942	96321971	LINE|L1|L1PA2	+	chr12	96289257	96303125	CDK17|ENST00000553042.1	-	96289257,96294998,96297269,96297626,96298868,96300303,96303040	96289287,96295122,96297332,96297721,96298983,96300360,96303125	0.909091
cardiac_muscle_cell	chr2	174410248	174410341	174410340	+	High_confidence	38	38	299	6.624431	5.516636	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.826087
cardiac_muscle_cell	chrX	3815171	3815202	3815201	+	High_confidence	6	6	17	0.376640	3.734522	chrX	3815241	3815539	SINE|Alu|AluY	+	chrX	3815119	3816220	MSTRG.37324.1	+	3815119	3816220	0.647059
cardiac_muscle_cell	chr22	46575631	46575641	46575640	+	High_confidence	4	4	8	0.177242	2.500000	chr22	46575415	46575643	LINE|L2|L2c	-	chr22	46576011	46637936	GRAMD4|ENST00000447351.5	+	46576011,46626750,46637839	46576078,46626961,46637936	0.625000
cardiac_muscle_cell	chr1	161043269	161043293	161043269	-	RAMPAGE_only	3	3	10	0.221553	2.721928	chr1	161043002	161043224	SINE|MIR|MIRb	-	chr1	161039250	161044937	USF1|NM_001276373.1	-	161039250,161040201,161040575,161040813,161041323,161041650,161042115,161042554,161042832,161043267,161044911	161040009,161040330,161040670,161040872,161041411,161041846,161042217,161042670,161042882,161043360,161044937	0.600000
cardiac_muscle_cell	chrX	131794400	131794419	131794400	-	RAMPAGE_only	4	4	12	0.265863	2.845351	chrX	131794354	131794480	SINE|Alu|FLAM_A	+	chrX	131691529	131795809	FIRRE|ENST00000637577.2	-	131691529,131709497,131711650,131743095,131749305,131755597,131756642,131768548,131783886,131785156,131793993,131794296,131795808	131692636,131709556,131711744,131743248,131749458,131755746,131756709,131768696,131784039,131785258,131794115,131794466,131795809	0.666667
cardiac_muscle_cell	chr4	61517248	61517324	61517271	+	RAMPAGE_only	5	6	33	0.731124	4.680758	chr4	61517137	61518029	DNA|hAT-Charlie|Charlie17b	+	chr4	61497293	62071127	ADGRL3|ENST00000506746.5	+	61497293,61517314,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61517518,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.878788
cardiac_muscle_cell	chr16	15006396	15006422	15006403	+	RAMPAGE_only	5	5	15	0.332329	3.521641	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.733333
cardiac_muscle_cell	chrX	100680074	100680080	100680074	-	RAMPAGE_only	20	20	47	1.041298	4.562478	chrX	100679783	100680407	LINE|L2|L2b	+	chrX	100674493	100678783	SYTL4|ENST00000491602.1	-	100674493,100678390	100676176,100678783	0.978723
cardiac_muscle_cell	chr6	17288426	17288538	17288483	+	RAMPAGE_only	7	12	47	1.041298	4.308903	chr6	17288409	17288530	SINE|MIR|MIRb	-	chr6	17280406	17293023	MSTRG.30445.4	+	17280406,17281418,17282804,17284656,17285052,17290848,17291755	17281327,17281749,17282928,17284711,17290068,17290893,17293023	0.978723
cardiac_muscle_cell	chr1	212792421	212792445	212792444	-	High_confidence	5	5	16	0.354485	3.272906	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.875000
cardiac_muscle_cell	chr3	139344535	139344548	139344547	+	High_confidence	888	889	2136	47.323693	6.308246	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.933521
cardiac_muscle_cell	chr2	196906032	196906043	196906032	-	RAMPAGE_only	3	4	11	0.243708	2.913977	chr2	196905587	196911636	LINE|L1|L1HS	+	chr2	196835183	196926655	PGAP1|ENST00000423035.5	-	196835183,196842720,196843887,196844523,196845881,196847002,196847946,196864986,196870940,196872440,196872959,196873527,196873684,196875745,196880075,196885423,196885833,196890827,196892345,196893139,196897130,196898316,196902584,196912881,196916417,196919996,196922102,196926469	196841372,196842825,196844075,196844574,196846017,196847200,196848037,196865080,196870979,196872549,196873026,196873579,196873758,196875821,196880153,196885475,196885880,196890911,196892401,196893245,196897197,196898369,196902742,196913053,196916593,196920150,196922186,196926655	1.000000
cardiac_muscle_cell	chr2	188516176	188516181	188516177	+	RAMPAGE_only	4	5	10	0.221553	2.947703	chr2	188516132	188516621	LINE|L1|HAL1	-	chr2	188522737	188584309	GULP1|ENST00000476422.5	+	188522737,188529096,188541180,188569238,188570027,188584264	188522827,188529195,188541318,188569355,188570120,188584309	0.800000
cardiac_muscle_cell	chr18	41632127	41632232	41632127	-	High_confidence	379	408	2032	45.019544	7.909301	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41521197	41632075	KC6|ENST00000600183.5	-	41521197,41525354,41631999	41521496,41525526,41632075	0.558563
cardiac_muscle_cell	chr2	211592008	211592009	211592008	-	RAMPAGE_only	29	32	34	0.753280	4.288910	chr2	211591918	211592462	LTR|ERV1|LTR6B	-	chr2	211375716	212124907	ERBB4|ENST00000402597.6	-	211375716,211386852,211420440,211422006,211424154,211428407,211430944,211561902,211619176,211623921,211630461,211657753,211665322,211673163,211679051,211701966,211704103,211705317,211712049,211713534,211722392,211725075,211750638,211788024,211947429,212124751	211384060,211387150,211420611,211422104,211424301,211428483,211431100,211562088,211619275,211624044,211630594,211657828,211665477,211673257,211679184,211702166,211704194,211705391,211712176,211713648,211722534,211725194,211750704,211788159,211947616,212124907	0.617647
cardiac_muscle_cell	chr22	50785210	50785261	50785210	+	RAMPAGE_only	5	5	25	0.553882	3.653661	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.960000
cardiac_muscle_cell	chr3	29280832	29280877	29280838	-	High_confidence	21	21	141	3.123895	6.170155	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280841	MSTRG.24722.1	-	29264193,29274322,29280730	29264757,29274424,29280841	0.631206
cardiac_muscle_cell	chr2	11201333	11201356	11201333	-	RAMPAGE_only	7	7	14	0.310174	3.026987	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.928571
cardiac_muscle_cell	chr6	28985669	28985694	28985669	+	High_confidence	6	8	27	0.598193	3.777797	chr6	28985713	28985796	SINE|Alu|AluJo	+	chr6	28986202	28987484	HCG15|ENST00000438190.1	+	28986202,28986312,28986676	28986232,28986506,28987484	0.629630
cardiac_muscle_cell	chr1	10459993	10459994	10459993	-	RAMPAGE_only	9	10	11	0.243708	2.921928	chr1	10459962	10460261	SINE|Alu|AluSx	+	chr1	10456521	10472526	DFFA|ENST00000377038.7	-	10456521,10463057,10463430,10467189,10469176,10472322	10461702,10463209,10463620,10467332,10469338,10472526	0.909091
cardiac_muscle_cell	chr7	87040144	87040145	87040144	-	High_confidence	6	6	8	0.177242	2.521641	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86911824	87040221	MSTRG.33266.9	-	86911824,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040221	0.625000
cardiac_muscle_cell	chr14	57112666	57112703	57112676	-	High_confidence	40	40	107	2.370616	5.561352	chr14	57112210	57118214	LINE|L1|L1PA2	+	chr14	57067007	57112660	AL391152.1|ENST00000551408.2	-	57067007,57112194	57067165,57112660	0.504673
cardiac_muscle_cell	chr6	43013478	43013548	43013478	-	High_confidence	5	5	28	0.620348	3.869331	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.964286
cardiac_muscle_cell	chr2	26974581	26974646	26974622	+	High_confidence	118	122	378	8.374699	5.568122	chr2	26974629	26974850	SINE|MIR|MIRb	+	chr2	26974492	27027195	MSTRG.19824.7	+	26974492,27022211,27023331,27024095,27025582,27025879,27026279	26974710,27022339,27023477,27024252,27025737,27026032,27027195	0.894180
cardiac_muscle_cell	chr16	2757779	2757802	2757801	+	High_confidence	11	11	35	0.775435	4.185867	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.971429
cardiac_muscle_cell	chr15	24996960	24997005	24996960	+	RAMPAGE_only	4	4	21	0.465261	3.584184	chr15	24996994	24997299	SINE|Alu|AluSq2	+	chr15	24981993	25002830	MSTRG.11662.20	+	24981993,24998969,25000244,25001357,25002724	24998486,24999078,25000374,25001713,25002830	0.952381
cardiac_muscle_cell	chr16	61918747	61918768	61918747	-	High_confidence	5	5	11	0.243708	3.277613	chr16	61918303	61919817	LINE|L1|L1HS	+	chr16	61901391	61918714	CDH8|ENST00000577228.1	-	61901391,61918257	61901473,61918714	0.636364
cardiac_muscle_cell	chr11	75979522	75979532	75979531	+	High_confidence	23	24	44	0.974833	4.282099	chr11	75974665	75980018	LINE|L1|L1PA6	-	chr11	75979525	76142651	UVRAG|ENST00000531818.5	+	75979525,75983386,76004004,76007533,76008806,76016814,76065709,76115923,76140710	75980038,75983513,76004089,76007621,76008867,76016980,76065788,76116015,76142651	0.954545
cardiac_muscle_cell	chr6	26956514	26956552	26956544	-	High_confidence	11	11	24	0.531727	3.969002	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.833333
cardiac_muscle_cell	chr4	8436023	8436026	8436025	-	RAMPAGE_only	17	30	40	0.886211	4.765312	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.575000
cardiac_muscle_cell	chr5	80655184	80655185	80655184	+	High_confidence	9	10	13	0.288019	3.392747	chr5	80655174	80655239	SINE|MIR|MIR3	-	chr5	80654647	80876460	MSH3|ENST00000265081.6	+	80654647,80656410,80665142,80670096,80672243,80672740,80674982,80678926,80725452,80728850,80741463,80744505,80761545,80767932,80768834,80775693,80778719,80787564,80792732,80813583,80854129,80864812,80873115,80875750	80654964,80656531,80665363,80670309,80672360,80672858,80675128,80679093,80725565,80728965,80741548,80744615,80761678,80768120,80769003,80775758,80778836,80787672,80792844,80813741,80854316,80864942,80873287,80876460	0.769231
cardiac_muscle_cell	chr2	172596256	172596860	172596786	+	RAMPAGE_only	79	81	792	17.546987	7.015464	chr2	172596730	172596897	DNA|hAT-Charlie|MER5A	+	chr2	172556101	172608669	MSTRG.21431.12	+	172556101,172558707,172562219,172564502,172564977,172566855,172568740,172570725,172586277,172592934,172595828,172599418	172556346,172558849,172562291,172564687,172565073,172566933,172568817,172570824,172586388,172593048,172599052,172608669	0.997475
cardiac_muscle_cell	chr6	113649568	113649576	113649568	-	High_confidence	4	5	10	0.221553	2.646439	chr6	113649538	113649782	SINE|MIR|MIRc	-	chr6	113616926	113650090	LINC02541|ENST00000649523.1	-	113616926,113622880,113623170,113623739,113627520,113649403,113650014	113617423,113623054,113623646,113623822,113627675,113649821,113650090	0.900000
cardiac_muscle_cell	chr14	77737015	77737045	77737015	-	High_confidence	2	2	11	0.243708	2.921928	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.818182
cardiac_muscle_cell	chr9	132789854	132789856	132789855	-	RAMPAGE_only	10	13	16	0.354485	3.056565	chr9	132789646	132790007	LTR|ERVL-MaLR|MLT1E2	-	chr9	132725582	132727598	AK8|ENST00000467161.1	-	132725582,132727453	132725925,132727598	0.937500
cardiac_muscle_cell	chr22	30975219	30975346	30975258	+	RAMPAGE_only	18	19	167	3.699933	4.718372	chr22	30975231	30975411	DNA|hAT-Charlie|Charlie15a	-	chr22	30972262	30976063	TUG1|ENST00000602393.1	+	30972262,30975169	30973601,30976063	0.982036
cardiac_muscle_cell	chr4	88261798	88261822	88261821	-	RAMPAGE_only	5	5	9	0.199398	2.641604	chr4	88261681	88261864	SINE|Alu|AluSq2	-	chr4	88257619	88284736	PPM1K|ENST00000608933.5	-	88257619,88265000,88268189,88268740,88277142,88278143,88284405	88262726,88265135,88268334,88268906,88277243,88278642,88284736	1.000000
cardiac_muscle_cell	chr19	45450739	45450766	45450757	-	High_confidence	12	12	42	0.930522	4.755296	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.666667
cardiac_muscle_cell	chr1	201363846	201363889	201363861	-	High_confidence	8	9	29	0.642503	4.180451	chr1	201363783	201363861	LINE|L2|L2b	+	chr1	201359007	201364188	TNNT2|ENST00000460780.5	-	201359007,201359622,201360452,201361912,201362385,201363295	201359255,201359663,201361369,201362022,201362394,201364188	0.931034
cardiac_muscle_cell	chr2	173225116	173225197	173225189	+	RAMPAGE_only	7	7	50	1.107764	4.551272	chr2	173225138	173225282	DNA|hAT-Charlie|MER20B	+	chr2	173075841	173227146	MAP3K20|ENST00000338983.7	+	173075841,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173221149	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173227146	1.000000
cardiac_muscle_cell	chr7	150792324	150792345	150792344	-	RAMPAGE_only	3	6	10	0.221553	2.921928	chr7	150792306	150792818	LTR|ERVL-MaLR|MLT1G1	+	chr7	150791300	150796732	TMEM176B|ENST00000429904.6	-	150791300,150792055,150793087,150793543,150793960,150796365	150791623,150792175,150793315,150793600,150794071,150796732	0.700000
cardiac_muscle_cell	chr1	170067543	170067549	170067548	-	RAMPAGE_only	6	7	14	0.310174	3.324863	chr1	170067296	170068769	LINE|L1|L1MB5	+	chr1	169921328	170068915	KIFAP3|NM_001204517.1	-	169921328,169954010,169961045,169972512,169978084,169981971,169982701,169983269,169984581,169992154,170016461,170024417,170031885,170034371,170035453,170038289,170039232,170046711,170055304,170067503	169921781,169954110,169961235,169972598,169978183,169982097,169982867,169983382,169984690,169992255,170016624,170024596,170031984,170034496,170035553,170038431,170039288,170046866,170055436,170068915	1.000000
cardiac_muscle_cell	chr3	193614812	193614824	193614823	+	High_confidence	6	6	10	0.221553	2.503258	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.700000
cardiac_muscle_cell	chr19	58306188	58306202	58306201	+	High_confidence	4	4	8	0.177242	2.500000	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58315183	MSTRG.19539.35	+	58305376,58306087,58312165	58305445,58306216,58315183	0.625000
cardiac_muscle_cell	chr3	132285313	132285320	132285316	-	High_confidence	11	11	36	0.797590	4.477025	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.583333
cardiac_muscle_cell	chr2	159428332	159428417	159428356	-	RAMPAGE_only	6	6	37	0.819746	4.668913	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159400598	159419867	BAZ2B|ENST00000482501.5	-	159400598,159404848,159405021,159412334,159419779	159400664,159404910,159405114,159412545,159419867	0.648649
cardiac_muscle_cell	chrX	48036180	48036218	48036213	+	RAMPAGE_only	7	7	29	0.642503	4.168326	chrX	48035853	48036312	LTR|ERV1|MER92A	-	chrX	48056309	48066583	ZNF630-AS1|NR_046742.1	+	48056309,48066309	48056432,48066583	0.517241
cardiac_muscle_cell	chr3	37058852	37058890	37058885	-	RAMPAGE_only	4	8	24	0.531727	3.767894	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	1.000000
cardiac_muscle_cell	chr22	21014923	21014955	21014954	+	High_confidence	8	8	30	0.664659	4.307355	chr22	21014708	21014996	LINE|L2|L2b	+	chr22	21015026	21028830	P2RX6|ENST00000413302.6	+	21015026,21015941,21017988,21022675,21022941,21023117,21023274,21023508,21025804,21026010,21026251,21026419	21015338,21016092,21018060,21022751,21023035,21023198,21023416,21023618,21025898,21026076,21026329,21028830	0.733333
cardiac_muscle_cell	chr1	6205508	6205519	6205518	+	High_confidence	7	7	19	0.420950	3.239098	chr1	6205476	6205750	SINE|Alu|AluSz	-	chr1	6205474	6208307	RNF207|ENST00000466994.5	+	6205474,6206195,6206535,6207378	6206101,6206302,6206726,6208307	0.736842
cardiac_muscle_cell	chr12	53033939	53034028	53034021	+	RAMPAGE_only	6	6	51	1.129920	4.893661	chr12	53034069	53034237	DNA|hAT-Charlie|MER20B	+	chr12	53037725	53040352	EIF4B|ENST00000549592.1	+	53037725,53039629,53040142	53039343,53039702,53040352	0.803922
cardiac_muscle_cell	chr11	58059938	58059959	58059943	-	High_confidence	3	3	9	0.199398	2.725481	chr11	58059905	58060126	LTR|ERVL|LTR33	+	chr11	58044109	58060138	AP004247.2|ENST00000526131.1	-	58044109,58047256,58057682,58059925	58045342,58047547,58057835,58060138	0.555556
cardiac_muscle_cell	chr17	21001486	21001610	21001609	-	RAMPAGE_only	45	46	164	3.633467	5.333281	chr17	21001557	21001631	DNA|hAT-Charlie|MER58C	+	chr17	20999592	21043039	USP22|ENST00000261497.8	-	20999592,21004201,21004927,21006895,21007869,21011150,21012829,21015751,21017941,21019083,21021112,21028541,21042664	21003073,21004351,21004990,21006987,21007996,21011309,21012935,21015899,21018111,21019185,21021226,21028674,21043039	1.000000
cardiac_muscle_cell	chr11	27220088	27220120	27220088	-	High_confidence	9	10	28	0.620348	4.110577	chr11	27219703	27225730	LINE|L1|L1PA2	+	chr11	27063019	27220086	BBOX1-AS1|ENST00000530430.1	-	27063019,27066491,27151049,27217316,27219686	27063060,27066662,27151152,27217480,27220086	0.642857
cardiac_muscle_cell	chr7	99410046	99410057	99410046	+	High_confidence	3	3	12	0.265863	3.251629	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99409084	99419577	MSTRG.33422.5	+	99409084,99410033,99411063,99416137,99417428	99409245,99410169,99411186,99416260,99419577	1.000000
cardiac_muscle_cell	chr15	43331937	43331976	43331957	+	High_confidence	4	4	15	0.332329	3.324863	chr15	43331694	43331973	LINE|L2|L2-3_Crp	-	chr15	43331974	43345877	ADAL|ENST00000563551.1	+	43331974,43333310,43335695,43340264,43342993,43345853	43332000,43333434,43335826,43340352,43343075,43345877	0.733333
cardiac_muscle_cell	chr2	179054798	179054805	179054798	+	High_confidence	13	13	26	0.576037	3.902175	chr2	179054073	179056929	LTR|ERV1|HERVH-int	-	chr2	179054805	179058325	MSTRG.21530.1	+	179054805,179056428	179056407,179058325	0.692308
cardiac_muscle_cell	chr14	75133504	75133580	75133504	-	RAMPAGE_only	5	5	31	0.686814	4.257111	chr14	75133229	75134244	LINE|L1|L1ME1	+	chr14	75131469	75176631	TMED10|ENST00000303575.8	-	75131469,75135759,75147663,75152031,75176354	75135006,75135886,75147737,75152143,75176631	1.000000
cardiac_muscle_cell	chr20	47988795	47988824	47988823	-	RAMPAGE_only	3	4	16	0.354485	3.875000	chr20	47988801	47989059	LTR|ERVL-MaLR|MLT1L	-	chr20	47980092	47990117	LINC01522|NR_110027.1	-	47980092,47988606,47990014	47980778,47988742,47990117	0.875000
cardiac_muscle_cell	chr2	40453541	40453547	40453546	-	High_confidence	12	12	20	0.443106	3.426367	chr2	40453521	40453703	DNA|hAT-Charlie|MER5B	+	chr2	40430019	40453438	SLC8A1|ENST00000455476.5	-	40430019,40453160	40430304,40453438	0.600000
cardiac_muscle_cell	chr20	8600613	8600661	8600660	+	High_confidence	15	15	65	1.440094	4.331994	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.815385
cardiac_muscle_cell	chr6	118559693	118560192	118560011	+	RAMPAGE_only	17	18	365	8.086680	5.918311	chr6	118559956	118560031	LINE|CR1|L3	-	chr6	118548297	118560730	PLN|ENST00000357525.5	+	118548297,118558824	118548392,118560730	0.983562
cardiac_muscle_cell	chr8	126805154	126805180	126805179	+	RAMPAGE_only	8	8	26	0.576037	3.803074	chr8	126799617	126805646	LINE|L1|L1PA2	-	chr8	126557892	127292862	PCAT1|ENST00000645463.1	+	126557892,126589191,126592273,126713285,126877671,127006554,127292811	126557931,126589290,126592418,126713674,126877790,127006618,127292862	0.576923
cardiac_muscle_cell	chr6	26956577	26956599	26956598	-	High_confidence	4	4	18	0.398795	3.086049	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.833333
cardiac_muscle_cell	chr10	20819175	20819241	20819216	-	RAMPAGE_only	6	6	33	0.731124	3.876839	chr10	20819067	20819353	LINE|L1|L1PA13	-	chr10	20809866	20835561	NEBL|ENST00000493005.5	-	20809866,20812768,20813938,20815624,20817599,20818703,20823207,20826446,20828529,20831195,20831472,20835512	20809898,20812940,20814043,20815717,20817692,20819516,20823300,20826539,20828634,20831306,20831583,20835561	1.000000
cardiac_muscle_cell	chr1	200411581	200411582	200411581	+	High_confidence	8	9	10	0.221553	2.947703	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411693	200478360	AC104461.1|ENST00000647823.1	+	200411693,200444617,200472040,200473908,200477967	200411962,200444945,200472119,200474186,200478360	0.900000
cardiac_muscle_cell	chr9	73452778	73452779	73452778	+	RAMPAGE_only	20	21	23	0.509572	3.749903	chr9	73452617	73452998	LTR|ERVL-MaLR|MSTA	+	chr9	73445645	73455066	MSTRG.36310.2	+	73445645,73449390,73452779,73454886	73445719,73449507,73452914,73455066	0.565217
cardiac_muscle_cell	chr8	32927967	32927984	32927976	+	High_confidence	2188	2379	5058	112.061442	7.509969	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927961	33048451	MSTRG.34655.3	+	32927961,32996200,33041634,33044366	32928093,32996316,33041743,33048451	0.882167
cardiac_muscle_cell	chr6	128911427	128911449	128911448	+	RAMPAGE_only	4	4	14	0.310174	2.842371	chr6	128905633	128911663	LINE|L1|L1PA3	-	chr6	128883196	129516569	LAMA2|ENST00000421865.2	+	128883196,129049917,129059783,129098172,129143900,129146958,129148978,129154504,129165575,129177705,129190204,129192679,129250111,129252083,129260710,129267105,129270623,129280060,129287846,129291613,129297684,129300735,129312860,129314654,129315475,129315761,129316037,129320537,129328277,129342342,129349297,129353163,129366218,129369891,129383121,129391490,129393044,129401223,129402323,129403820,129427751,129438645,129440815,129443062,129445666,129452987,129454154,129456334,129460199,129464289,129465144,129473213,129475389,129478692,129481262,129486473,129491900,129492314,129502658,129503090,129505199,129507488,129512362,129514372,129516189	128883357,129050088,129059896,129098415,129144080,129147048,129149096,129154683,129165675,129177866,129190345,129192853,129250213,129252295,129260822,129267219,129270751,129280147,129288058,129291720,129297865,129300872,129313097,129314798,129315655,129315950,129316171,129320655,129328412,129342467,129349384,129353357,129366361,129369990,129383233,129391653,129393255,129401340,129402487,129403959,129427854,129438762,129440998,129443068,129445821,129453131,129454288,129456494,129460324,129464452,129465289,129473352,129475401,129478813,129481439,129486622,129492077,129492483,129502771,129503280,129505355,129507642,129512493,129514595,129516569	0.857143
cardiac_muscle_cell	chr11	67620862	67620865	67620862	-	High_confidence	196	203	357	7.909438	5.501252	chr11	67620425	67625693	LTR|ERV1|HERV9NC-int	+	chr11	67612652	67620865	MSTRG.6356.2	-	67612652,67613042,67615614,67615762,67616010	67612967,67615397,67615686,67615842,67620865	0.997199
cardiac_muscle_cell	chr3	125497340	125497349	125497340	-	RAMPAGE_only	5	6	11	0.243708	2.550341	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	1.000000
cardiac_muscle_cell	chr4	113537392	113537413	113537404	-	RAMPAGE_only	6	6	35	0.775435	4.329283	chr4	113537398	113537465	DNA|hAT-Ac|OldhAT1	-	chr4	113460146	113517643	CAMK2D|ENST00000509594.1	-	113460146,113465528,113500462,113509637,113513327,113513829,113515068,113517562	113460241,113465604,113500508,113509672,113513370,113513913,113515191,113517643	0.885714
cardiac_muscle_cell	chr3	14225364	14225365	14225364	+	High_confidence	136	163	173	3.832865	4.336107	chr3	14225057	14225513	LTR|ERVK|LTR3A	+	chr3	14225377	14230528	MSTRG.24570.1	+	14225377,14229704	14225626,14230528	0.832370
cardiac_muscle_cell	chr21	33931121	33931157	33931121	+	High_confidence	25	28	118	2.614324	4.895053	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931121	33971186	LINC00649|NR_038883.2	+	33931121,33945809,33969236	33931742,33945895,33971186	0.864407
cardiac_muscle_cell	chr1	41186128	41186147	41186139	-	RAMPAGE_only	6	6	14	0.310174	3.085055	chr1	41186124	41186319	SINE|MIR|MIR1_Amn	+	chr1	41027198	41163017	SCMH1|NM_001172221.1	-	41027198,41028583,41033982,41037361,41046406,41048689,41070594,41075218,41113282,41116921,41142877,41151613,41160874,41161363,41162778	41028319,41028726,41034048,41037541,41046598,41048890,41070721,41075451,41113526,41117010,41143112,41151684,41160898,41161432,41163017	0.785714
cardiac_muscle_cell	chr9	7153393	7153417	7153414	+	RAMPAGE_only	33	33	118	2.614324	5.727710	chr9	7153395	7153524	DNA|TcMar-Mariner|MARNA	-	chr9	6925500	7175347	KDM4C|ENST00000428870.6	+	6925500,6980924,6984165,6986343,6990415,7011697,7013787,7015852,7046861,7049091,7103684,7128065,7165237,7169797,7174552	6925671,6981118,6984404,6986666,6990524,7011879,7014001,7015929,7046917,7049200,7103870,7128236,7165357,7169890,7175347	0.957627
cardiac_muscle_cell	chr4	158173057	158173071	158173070	-	High_confidence	8	8	22	0.487416	3.617810	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158124473	158173050	FAM198B|ENST00000585682.5	-	158124473,158130785,158155610,158170465,158172867	158127614,158131012,158155825,158171599,158173050	0.772727
cardiac_muscle_cell	chr7	87040212	87040249	87040212	-	High_confidence	126	138	533	11.808768	7.432517	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86911824	87040221	MSTRG.33266.9	-	86911824,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040221	0.836773
cardiac_muscle_cell	chr1	16027017	16027018	16027017	+	High_confidence	34	35	44	0.974833	4.930484	chr1	16027025	16027092	SINE|MIR|MIR	+	chr1	16026838	16030075	CLCNKA|ENST00000491433.1	+	16026838,16027309,16027820,16028017,16028760,16029125,16029730,16029964	16026909,16027435,16027905,16028119,16028845,16029299,16029800,16030075	0.840909
cardiac_muscle_cell	chr2	67334102	67334103	67334102	-	RAMPAGE_only	7	7	10	0.221553	2.921928	chr2	67331916	67335853	LTR|ERV1|HERVH-int	+	chr2	67175422	67215277	LINC01829|ENST00000414404.1	-	67175422,67177581,67203115,67205508,67215227	67175699,67177712,67203173,67205563,67215277	0.600000
cardiac_muscle_cell	chr22	50756861	50756950	50756939	+	High_confidence	39	44	197	4.364592	6.352265	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50759584	MSTRG.24392.2	+	50756947,50759133	50757326,50759584	0.563452
cardiac_muscle_cell	chr17	4143196	4143218	4143199	+	High_confidence	313	322	893	19.784671	6.408237	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.960806
cardiac_muscle_cell	chr12	53464774	53464789	53464774	+	RAMPAGE_only	7	8	28	0.620348	4.083617	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.964286
cardiac_muscle_cell	chr2	29538189	29538190	29538189	+	RAMPAGE_only	9	10	10	0.221553	3.321928	chr2	29538208	29538633	LTR|ERVL-MaLR|MSTB	+	chr2	30231368	30260028	LBH|ENST00000395323.8	+	30231368,30234404,30257432	30231764,30234507,30260028	1.000000
cardiac_muscle_cell	chrX	147937503	147937592	147937542	+	RAMPAGE_only	5	6	37	0.819746	4.197160	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.621622
cardiac_muscle_cell	chr1	148900909	148900917	148900909	+	RAMPAGE_only	12	13	22	0.487416	4.095795	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148889644	148993882	PDE4DIP|ENST00000369351.7	+	148889644,148929196,148931799,148932112,148937746,148960653,148961836,148962195,148962427,148965483,148966542,148966838,148967725,148968835,148972179,148972510,148974513,148977936,148978277,148979736,148981269,148991884	148889894,148929273,148931923,148932288,148937864,148960785,148961956,148962288,148962640,148965642,148966656,148966976,148967905,148969030,148972344,148972592,148974605,148978053,148978415,148979849,148981397,148993882	0.863636
cardiac_muscle_cell	chr1	39382097	39382130	39382127	+	RAMPAGE_only	3	3	13	0.288019	3.251629	chr1	39382176	39382271	SINE|MIR|MIRb	+	chr1	39331137	39486987	MACF1|ENST00000289893.8	+	39331137,39337181,39340501,39340803,39346976,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39378460,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39427960,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39465094,39468614,39479797,39484600,39485537	39336653,39337331,39340717,39340953,39347210,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39378523,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39428287,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39465112,39468732,39480009,39484730,39486987	0.923077
cardiac_muscle_cell	chr9	3331042	3331044	3331042	-	RAMPAGE_only	4	6	8	0.177242	2.500000	chr9	3331035	3331297	LINE|L2|L2b	+	chr9	3247036	3395596	RFX3|ENST00000358730.6	-	3247036,3256990,3262934,3266207,3270370,3271002,3275499,3277339,3288130,3293076,3301545,3330258,3346666,3395471	3248185,3257199,3263084,3266305,3270525,3271118,3275612,3277461,3288250,3293258,3301620,3330517,3346764,3395596	0.875000
cardiac_muscle_cell	chr15	62815355	62815357	62815356	+	RAMPAGE_only	6	11	11	0.243708	2.913977	chr15	62815347	62815498	LINE|CR1|L3	+	chr15	62835644	62840590	TLN2|ENST00000559174.1	+	62835644,62835890,62838855,62840481	62835799,62836073,62838981,62840590	0.636364
cardiac_muscle_cell	chr16	67183484	67183520	67183519	-	High_confidence	4	4	15	0.332329	2.973557	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183941	MSTRG.14170.2	-	67175603,67178009,67178198,67179429,67179814,67180040,67181605,67183261,67183871	67176975,67178107,67178504,67179562,67179958,67180666,67181697,67183455,67183941	0.933333
cardiac_muscle_cell	chr13	43062188	43062251	43062226	+	RAMPAGE_only	24	25	122	2.702945	4.726187	chr13	43062071	43062490	LTR|ERVL|LTR33	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.967213
cardiac_muscle_cell	chr12	64715465	64715493	64715492	-	RAMPAGE_only	3	3	10	0.221553	2.846439	chr12	64715237	64715536	SINE|Alu|AluSx3	+	chr12	64713444	64752871	GNS|ENST00000418919.6	-	64713444,64720021,64721594,64723005,64728955,64737003,64739380,64740605,64743140,64744808,64745658,64747711,64752697	64716819,64720182,64721705,64723113,64729057,64737107,64739499,64740688,64743308,64744907,64745724,64747918,64752871	1.000000
cardiac_muscle_cell	chr8	102261159	102261211	102261159	-	High_confidence	3	3	14	0.310174	3.026987	chr8	102261109	102261291	DNA|hAT-Ac|OldhAT1	+	chr8	102253945	102261986	UBR5|ENST00000517465.1	-	102253945,102257631,102258315,102258984,102261145,102261914	102254514,102257717,102258424,102259129,102261259,102261986	0.928571
cardiac_muscle_cell	chr1	167937009	167937028	167937013	-	High_confidence	10	10	23	0.509572	4.011365	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167918067	167937040	MPC2|ENST00000271373.8	-	167918067,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937040	0.782609
cardiac_muscle_cell	chr16	396848	396860	396848	+	High_confidence	7	7	24	0.531727	3.918296	chr16	396818	396940	SINE|Alu|AluJb	-	chr16	396754	400754	NME4|NM_001286436.1	+	396754,398989,399378,399626,400218	397079,399123,399480,399739,400754	0.875000
cardiac_muscle_cell	chr8	102285735	102285755	102285735	-	RAMPAGE_only	4	4	14	0.310174	3.378783	chr8	102285712	102285783	DNA|hAT-Ac|OldhAT1	-	chr8	102252272	102412689	UBR5|NM_001282873.1	-	102252272,102257631,102258984,102261145,102261914,102264473,102265099,102266946,102268977,102270038,102271133,102272528,102275520,102275707,102276971,102278825,102279035,102280393,102281288,102285126,102285512,102286359,102287432,102288154,102289452,102293604,102293954,102294981,102295203,102295413,102295635,102296892,102297457,102298391,102298847,102299451,102299999,102304042,102305084,102311298,102311734,102312133,102312341,102313803,102314743,102323310,102326545,102327741,102329089,102329282,102342472,102345395,102346235,102346902,102360070,102360588,102361124,102361581,102412172	102254514,102257717,102259129,102261259,102262070,102264558,102265275,102267007,102269108,102270183,102271245,102272772,102275619,102275828,102277192,102278939,102279208,102280467,102281519,102285338,102285781,102286617,102287564,102288266,102289576,102293844,102294115,102295111,102295330,102295532,102295782,102296984,102297606,102298489,102298971,102299547,102300151,102304169,102305295,102311496,102311889,102312245,102312485,102313916,102314853,102323495,102326663,102327896,102329200,102329399,102342684,102345545,102346395,102347092,102360190,102360665,102361206,102361626,102412689	1.000000
cardiac_muscle_cell	chr8	28712412	28712425	28712424	+	RAMPAGE_only	7	7	13	0.288019	2.625815	chr8	28711903	28712458	LINE|L2|L2b	-	chr8	28710354	28715903	EXTL3|ENST00000518223.1	+	28710354,28713456,28715584	28710503,28713550,28715903	0.923077
cardiac_muscle_cell	chr2	196905964	196905975	196905974	-	RAMPAGE_only	5	5	12	0.265863	3.084963	chr2	196905587	196911636	LINE|L1|L1HS	+	chr2	196835183	196926655	PGAP1|ENST00000423035.5	-	196835183,196842720,196843887,196844523,196845881,196847002,196847946,196864986,196870940,196872440,196872959,196873527,196873684,196875745,196880075,196885423,196885833,196890827,196892345,196893139,196897130,196898316,196902584,196912881,196916417,196919996,196922102,196926469	196841372,196842825,196844075,196844574,196846017,196847200,196848037,196865080,196870979,196872549,196873026,196873579,196873758,196875821,196880153,196885475,196885880,196890911,196892401,196893245,196897197,196898369,196902742,196913053,196916593,196920150,196922186,196926655	0.916667
cardiac_muscle_cell	chr9	69347524	69347566	69347565	+	RAMPAGE_only	5	5	12	0.265863	3.095795	chr9	69347464	69347830	LTR|ERV1|LTR78	+	chr9	69337698	69388445	MSTRG.36271.11	+	69337698,69371498,69375735,69377369,69377610,69383629,69383946,69385794,69388157	69355888,69371609,69375864,69377477,69377744,69383759,69384025,69385947,69388445	0.916667
cardiac_muscle_cell	chr1	231847664	231847707	231847706	-	High_confidence	960	1103	2698	59.774965	8.372955	chr1	231847541	231847935	LINE|L2|L2a	+	chr1	231809861	231847684	MSTRG.3463.2	-	231809861,231822679,231847518	231814291,231822834,231847684	0.713862
cardiac_muscle_cell	chr2	71417011	71417048	71417011	+	RAMPAGE_only	16	16	51	1.129920	4.990957	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.921569
cardiac_muscle_cell	chr2	193170703	193170704	193170703	+	High_confidence	45	50	62	1.373628	4.826080	chr2	193170704	193171720	LINE|L1|L1HS	+	chr2	193170709	193171784	MSTRG.21724.1	+	193170709	193171784	0.935484
cardiac_muscle_cell	chr7	117154229	117154236	117154233	+	RAMPAGE_only	11	12	25	0.553882	2.637298	chr7	117154062	117154422	LTR|ERVL-MaLR|MLT1A	+	chr7	117173408	117209937	ST7|ENST00000485394.6	+	117173408,117189320,117190833,117209786	117173566,117189393,117190936,117209937	0.920000
cardiac_muscle_cell	chr4	110410982	110411003	110410982	+	RAMPAGE_only	5	5	13	0.288019	2.719295	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110476072	110565285	ENPEP|ENST00000265162.9	+	110476072,110488540,110491032,110506636,110509652,110510244,110513414,110515376,110520007,110520214,110531197,110542750,110543014,110548175,110549345,110549527,110549715,110553314,110559646,110561405	110477058,110488682,110491164,110506757,110509807,110510358,110513549,110515442,110520073,110520366,110531277,110542887,110543070,110548326,110549419,110549632,110549886,110553455,110559725,110565285	0.692308
cardiac_muscle_cell	chrX	16712869	16712933	16712889	-	High_confidence	110	113	580	12.850067	6.668666	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.972414
cardiac_muscle_cell	chr2	231072230	231072255	231072254	+	RAMPAGE_only	4	4	12	0.265863	2.845351	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.916667
cardiac_muscle_cell	chr6	145736020	145736023	145736022	-	High_confidence	9	13	17	0.376640	3.146286	chr6	145735975	145736071	SINE|MIR|MIR3	+	chr6	145625352	145736023	EPM2A|ENST00000611340.5	-	145625352,145635244,145686121,145735995	145627693,145635486,145686296,145736023	0.882353
cardiac_muscle_cell	chr1	23394306	23394339	23394306	-	RAMPAGE_only	12	12	35	0.775435	4.454822	chr1	23394262	23394444	SINE|MIR|MIRb	+	chr1	23381060	23424740	TCEA3|ENST00000450454.6	-	23381060,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23381474,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424740	0.914286
cardiac_muscle_cell	chr13	52661530	52661561	52661530	+	RAMPAGE_only	2	2	9	0.199398	2.750000	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	0.888889
cardiac_muscle_cell	chr2	68679571	68679583	68679582	+	High_confidence	18	18	46	1.019143	4.817053	chr2	68677861	68680074	LINE|L1|L1PA3	-	chr2	68679600	68816311	ARHGAP25|ENST00000463483.5	+	68679600,68710504,68775220,68782232,68787839,68807272,68813286,68816153	68679729,68710698,68775420,68782320,68787956,68807480,68813419,68816311	0.543478
cardiac_muscle_cell	chr11	10853133	10853187	10853133	-	RAMPAGE_only	3	3	22	0.487416	3.308751	chr11	10852862	10854628	DNA|hAT-Charlie|Charlie14a	-	chr11	10852703	10858073	ZBED5|NM_021211.3	-	10852703,10856143,10857861	10855118,10856257,10858073	0.909091
cardiac_muscle_cell	chr15	37040335	37040410	37040335	-	RAMPAGE_only	4	4	28	0.620348	3.499698	chr15	37040229	37040347	LINE|L2|L2c	+	chr15	36892218	37100530	MSTRG.11803.14	-	36892218,36895150,36896627,36950323,37036813,37093580,37094526,37095563,37096288,37097966,37098900,37099076	36892459,36895261,36896686,36950400,37083885,37093730,37094577,37095614,37096430,37098199,37098998,37100530	0.928571
cardiac_muscle_cell	chr14	73712898	73712928	73712898	-	RAMPAGE_only	5	5	18	0.398795	3.281036	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	1.000000
cardiac_muscle_cell	chr22	27920133	27920165	27920138	-	High_confidence	62	63	218	4.829853	6.606846	chr22	27919974	27920411	LINE|L2|L2b	-	chr22	27860195	27920134	PITPNB|ENST00000415296.5	-	27860195,27873737,27894554,27896551,27897129,27897800,27910963,27914316,27919810	27860241,27873815,27894638,27896626,27897137,27897892,27911109,27914347,27920134	0.683486
cardiac_muscle_cell	chr2	240022181	240022280	240022181	-	RAMPAGE_only	18	18	119	2.636479	4.064935	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.966387
cardiac_muscle_cell	chr2	178793716	178793738	178793728	-	RAMPAGE_only	2	2	9	0.199398	3.000000	chr2	178793595	178793814	SINE|Alu|AluSz6	+	chr2	178786088	178794954	TTN|ENST00000436599.1	-	178786088,178789359,178792071,178793403,178794398,178794921	178786141,178789497,178792197,178793541,178794551,178794954	0.555556
cardiac_muscle_cell	chr14	30690324	30690392	30690345	+	RAMPAGE_only	19	19	78	1.728112	4.577967	chr14	30684809	30690837	LINE|L1|L1HS	-	chr14	30676125	30705885	SCFD1|ENST00000554486.1	+	30676125,30694772,30700187,30702295,30705822	30676633,30694869,30700258,30702375,30705885	0.692308
cardiac_muscle_cell	chr2	179125226	179125270	179125249	-	High_confidence	8	10	43	0.952677	4.147561	chr2	179124713	179125532	LINE|L2|L2a	+	chr2	179109321	179124467	SESTD1|ENST00000446758.5	-	179109321,179112723,179115064,179116573,179117531,179121769,179123714,179124363	179110028,179112845,179115256,179116790,179117613,179121929,179123829,179124467	0.883721
cardiac_muscle_cell	chr5	157288627	157288628	157288627	+	RAMPAGE_only	10	10	15	0.332329	3.373557	chr5	157288569	157288795	SINE|MIR|MIRb	-	chr5	157269341	157395598	CYFIP2|NM_014376.3	+	157269341,157285338,157287018,157294782,157296672,157300714,157302793,157304237,157307760,157309742,157311663,157314343,157314968,157319761,157320654,157323920,157325481,157326170,157327972,157330741,157333326,157339056,157341069,157359004,157360281,157361467,157382589,157383264,157389188,157390520,157392832	157269583,157285478,157287108,157294860,157296774,157300896,157302890,157304366,157307865,157309834,157311781,157314463,157315094,157319928,157320802,157324074,157325638,157326267,157328049,157330850,157333446,157339256,157341157,157359148,157360372,157361598,157382662,157383359,157389427,157390668,157395598	0.666667
cardiac_muscle_cell	chr2	179051613	179051614	179051613	-	RAMPAGE_only	4	4	7	0.155087	2.584963	chr2	179051586	179051988	LTR|ERV1|LTR7	-	chr2	178872132	179050086	CCDC141|ENST00000446116.5	-	178872132,178877963,178884900,178886751,178888526,178905328,178944534,178961229,178975056,178978483,179047283,179049839	178872312,178878143,178885092,178886871,178888668,178905501,178944651,178961483,178975165,178978675,179047406,179050086	0.857143
cardiac_muscle_cell	chr2	10120434	10120435	10120434	+	High_confidence	20	22	29	0.642503	4.282484	chr2	10120422	10120535	SINE|Alu|FLAM_C	+	chr2	10120697	10131418	RRM2|ENST00000641198.1	+	10120697,10122754,10122982,10123386,10123735,10124716,10126874,10127086,10128847,10129040,10129233	10120882,10122897,10123057,10123530,10123852,10124850,10126969,10127220,10128952,10129154,10131418	0.517241
cardiac_muscle_cell	chrX	107156231	107156267	107156231	-	RAMPAGE_only	13	13	49	1.085609	4.954449	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.571429
cardiac_muscle_cell	chr8	61578141	61578142	61578141	+	High_confidence	147	156	163	3.611312	5.358958	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.975460
cardiac_muscle_cell	chr10	20921343	20921357	20921343	-	RAMPAGE_only	4	4	9	0.199398	2.500000	chr10	20921267	20921576	LTR|ERVL|LTR33	+	chr10	20779972	20897602	NEBL|NM_006393.2	-	20779972,20787201,20808509,20809805,20812768,20813938,20815624,20817599,20819423,20823207,20826446,20828529,20831195,20831472,20835512,20840738,20845257,20850394,20852544,20858239,20859712,20868663,20869739,20880793,20888096,20889844,20896957,20897124	20785923,20787308,20808659,20809898,20812940,20814043,20815717,20817692,20819516,20823300,20826539,20828634,20831306,20831583,20835623,20840849,20845368,20850502,20852649,20858344,20859826,20868765,20869841,20880904,20888207,20889949,20897029,20897602	0.888889
cardiac_muscle_cell	chr19	38822839	38822840	38822839	+	RAMPAGE_only	72	75	76	1.683802	4.976080	chr19	38821336	38823305	LTR|ERV1|LTR12C	+	chr19	38820165	38823223	AC104534.1|ENST00000594558.1	+	38820165,38822984	38820492,38823223	0.644737
cardiac_muscle_cell	chr9	104763740	104763756	104763755	+	High_confidence	12	15	26	0.576037	4.161978	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	1.000000
cardiac_muscle_cell	chr20	35732254	35732368	35732338	-	High_confidence	9	9	83	1.838889	4.550784	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.987952
cardiac_muscle_cell	chr7	97954113	97954143	97954142	-	RAMPAGE_only	6	8	19	0.420950	3.530493	chr7	97951318	97955393	LTR|ERV1|HERVE-int	-	chr7	97852313	97955673	MSTRG.33376.12	-	97852313,97853059,97853304,97854579,97855352,97856689,97858277,97858853,97859212,97864258,97868907,97869777,97872350,97928081,97937079,97953205	97852468,97853215,97853386,97854680,97855459,97856816,97858405,97858955,97859398,97864496,97869179,97869813,97872449,97928777,97937160,97955673	0.947368
cardiac_muscle_cell	chr3	141429581	141429587	141429586	+	RAMPAGE_only	5	5	11	0.243708	2.663533	chr3	141429492	141430039	LINE|L2|L2a	-	chr3	141426126	141443020	ZBTB38|ENST00000510726.1	+	141426126,141427633,141442388	141426165,141427821,141443020	0.727273
cardiac_muscle_cell	chr2	96638016	96638023	96638022	-	High_confidence	7	7	19	0.420950	3.932138	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.684211
cardiac_muscle_cell	chr9	39810033	39810094	39810033	-	High_confidence	33	33	169	3.744244	5.310764	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803576	39810063	MSTRG.36161.3	-	39803576,39809485,39809730	39803859,39809615,39810063	0.875740
cardiac_muscle_cell	chr17	76740500	76740524	76740517	+	RAMPAGE_only	7	7	31	0.686814	3.466248	chr17	76740464	76740701	SINE|MIR|MIR	+	chr17	76742190	76769840	MFSD11|ENST00000585584.5	+	76742190,76743397,76744321,76745392,76754046,76767385,76769745	76742273,76743456,76744466,76745439,76754087,76767451,76769840	0.709677
cardiac_muscle_cell	chr1	6200570	6200658	6200657	-	High_confidence	27	32	223	4.940629	3.996718	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	1.000000
cardiac_muscle_cell	chr12	50763491	50763522	50763521	+	High_confidence	8	8	22	0.487416	3.970573	chr12	50763350	50763657	SINE|Alu|AluJo	+	chr12	50763709	50814192	ATF1|ENST00000552510.5	+	50763709,50780139,50795908,50809455,50814009	50763741,50780238,50796009,50809589,50814192	0.681818
cardiac_muscle_cell	chr17	75833300	75833329	75833306	-	High_confidence	24	25	72	1.595181	5.297221	chr17	75833179	75833712	LINE|L2|L2a	+	chr17	75827230	75833269	MSTRG.16469.3	-	75827230,75828786,75830027,75830361,75830577,75831097,75831242,75832965,75833192	75828086,75828983,75830151,75830482,75830661,75831169,75831348,75833045,75833269	0.944444
cardiac_muscle_cell	chr1	120288993	120289027	120288993	+	RAMPAGE_only	6	6	20	0.443106	3.308695	chr1	120288937	120289059	SINE|MIR|MIR3	-	chr1	120232932	120330886	MSTRG.2034.3	+	120232932,120251413,120256602,120277925,120319190,120319503,120327434	120233347,120251469,120256754,120278036,120319314,120319679,120330886	1.000000
cardiac_muscle_cell	chr1	31373534	31373541	31373540	-	High_confidence	7	7	13	0.288019	2.777363	chr1	31373523	31373667	SINE|MIR|MIRb	-	chr1	31365252	31373288	FABP3|NM_001320996.1	-	31365252,31367392,31369384,31372941	31365939,31367494,31369590,31373288	1.000000
cardiac_muscle_cell	chr15	70691614	70691634	70691633	-	RAMPAGE_only	4	4	10	0.221553	2.725481	chr15	70691585	70691668	LINE|L2|L2a	+	chr15	70671877	70699666	UACA|ENST00000560523.5	-	70671877,70676492,70677107,70678098,70679607,70682757,70684264,70687539,70687749,70690453,70691298,70695016,70699526	70672001,70676591,70677140,70678206,70679676,70682795,70684446,70687646,70687820,70690511,70691363,70695105,70699666	0.900000
cardiac_muscle_cell	chr1	31746717	31746744	31746743	-	RAMPAGE_only	49	52	78	1.728112	4.763566	chr1	31746731	31747473	LINE|L2|L2b	+	chr1	31739514	31756264	ADGRB2|ENST00000530134.5	-	31739514,31739925,31741623,31741799,31742052,31742837,31744647,31755998	31739635,31740034,31741725,31741967,31742217,31743002,31744731,31756264	0.653846
cardiac_muscle_cell	chr17	59892718	59892724	59892719	-	High_confidence	3	5	11	0.243708	2.921928	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.818182
cardiac_muscle_cell	chr7	44828784	44828879	44828800	-	RAMPAGE_only	3	3	36	0.797590	3.970576	chr7	44828696	44829092	LTR|ERVL-MaLR|MLT1D	-	chr7	44826790	44848063	MSTRG.32888.1	-	44826790,44833232,44835528,44840898,44843276,44847968	44832808,44834562,44835658,44841012,44843354,44848063	0.944444
cardiac_muscle_cell	chr21	33968445	33968481	33968463	-	High_confidence	18	23	55	1.218541	5.085639	chr21	33968191	33968612	LTR|ERVL-MaLR|MLT1J	-	chr21	33967100	33968573	AP000569.1|ENST00000607953.1	-	33967100,33968232	33967350,33968573	0.690909
cardiac_muscle_cell	chr8	93794731	93794754	93794731	+	High_confidence	3	4	13	0.288019	2.792481	chr8	93794713	93794824	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.923077
cardiac_muscle_cell	chr14	32075876	32075880	32075876	+	RAMPAGE_only	5	5	13	0.288019	3.251629	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076966	32155011	ARHGAP5|ENST00000556611.5	+	32076966,32090501,32117142,32146262,32149901,32152422,32154620	32077053,32094386,32117287,32146340,32150033,32152528,32155011	0.538462
cardiac_muscle_cell	chr8	67056534	67056544	67056543	-	High_confidence	5	5	11	0.243708	3.095795	chr8	67056310	67056494	SINE|Alu|AluJr	-	chr8	67043078	67056560	COPS5|ENST00000523086.5	-	67043078,67045811,67047684,67051229,67056518	67043317,67045960,67047859,67051341,67056560	1.000000
cardiac_muscle_cell	chr20	37298760	37298761	37298760	+	RAMPAGE_only	17	17	17	0.376640	2.939829	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
cardiac_muscle_cell	chr13	110507478	110507514	110507504	+	RAMPAGE_only	6	7	31	0.686814	4.215061	chr13	110507382	110507519	LINE|RTE-X|L4_A_Mam	-	chr13	110511364	110513027	COL4A2|ENST00000648222.1	+	110511364	110513027	0.806452
cardiac_muscle_cell	chr12	96316329	96316331	96316329	-	RAMPAGE_only	6	8	10	0.221553	2.725481	chr12	96315942	96321971	LINE|L1|L1PA2	+	chr12	96289257	96303125	CDK17|ENST00000553042.1	-	96289257,96294998,96297269,96297626,96298868,96300303,96303040	96289287,96295122,96297332,96297721,96298983,96300360,96303125	0.500000
cardiac_muscle_cell	chr9	121313981	121314021	121314020	+	RAMPAGE_only	8	8	27	0.598193	3.565448	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.962963
cardiac_muscle_cell	chr1	75376059	75376060	75376059	-	RAMPAGE_only	9	9	13	0.288019	3.022055	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.692308
cardiac_muscle_cell	chr5	27472283	27472304	27472283	+	High_confidence	1187	1253	3469	76.856691	7.506412	chr5	27472073	27472487	LTR|ERV1|MER61C	+	chr5	27472306	27491077	MSTRG.28436.3	+	27472306,27475534,27484925	27472519,27477801,27491077	0.766215
cardiac_muscle_cell	chr3	33446693	33446735	33446693	+	High_confidence	11	11	27	0.598193	3.689892	chr3	33446461	33447026	LTR|ERV1|LTR12C	+	chr3	33446611	33458005	MSTRG.24768.1	+	33446611,33453035	33447137,33458005	0.962963
cardiac_muscle_cell	chr2	96303172	96303331	96303172	-	RAMPAGE_only	7	7	71	1.573025	5.003655	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.985915
cardiac_muscle_cell	chr4	47831053	47831056	47831055	+	High_confidence	4	8	8	0.177242	2.750000	chr4	47831064	47831545	LINE|RTE-BovB|MamRTE1	+	chr4	47831344	47896848	LOC101927179|NR_125881.1	+	47831344,47875205,47896541	47831508,47875331,47896848	0.625000
cardiac_muscle_cell	chr11	104153045	104153070	104153064	-	RAMPAGE_only	187	197	802	17.768540	7.778195	chr11	104153017	104153226	LINE|L2|L2	+	chr11	103907185	104164107	PDGFD|ENST00000393158.6	-	103907185,103926911,103943451,103947661,103996064,104000050,104163803	103909819,103927126,103943650,103947724,103996245,104000255,104164107	0.549875
cardiac_muscle_cell	chr17	47056644	47056652	47056644	-	RAMPAGE_only	2	2	8	0.177242	2.500000	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.500000
cardiac_muscle_cell	chr5	128863474	128863489	128863488	+	RAMPAGE_only	6	7	13	0.288019	3.418296	chr5	128863255	128863676	LTR|ERVL|MLT2D	+	chr5	128965126	129033642	SLC27A6|NM_001317984.1	+	128965126,128965873,128985132,128988599,128990339,129015884,129023619,129027132,129028344,129029576,129033105	128965697,128966618,128985336,128988758,128990464,129016079,129023710,129027331,129028442,129029707,129033642	0.615385
cardiac_muscle_cell	chr2	37147694	37147707	37147694	-	High_confidence	2	3	6	0.132932	2.584963	chr2	37147318	37147662	LINE|L1|L1PA4	-	chr2	37107272	37147806	EIF2AK2|ENST00000405334.5	-	37107272,37107473,37109193,37114730,37119958,37122505,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687	37107395,37107527,37109295,37114859,37120139,37122664,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147806	0.666667
cardiac_muscle_cell	chr15	66502611	66502741	66502611	-	High_confidence	68	68	769	17.037416	6.462724	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.916775
cardiac_muscle_cell	chr14	75132356	75132542	75132356	-	RAMPAGE_only	7	7	107	2.370616	5.437729	chr14	75132105	75132408	SINE|Alu|AluSz	+	chr14	75131469	75176631	TMED10|ENST00000303575.8	-	75131469,75135759,75147663,75152031,75176354	75135006,75135886,75147737,75152143,75176631	1.000000
cardiac_muscle_cell	chr4	64311402	64311501	64311500	-	RAMPAGE_only	7	7	52	1.152075	4.048206	chr4	64311321	64311455	LINE|L2|L2a	-	chr4	64278458	64409398	MSTRG.27289.3	-	64278458,64281473,64289709,64299973,64305165,64309825,64322688,64328511,64375171,64409117	64281086,64281559,64289767,64300017,64305238,64314763,64322792,64328556,64375223,64409398	1.000000
cardiac_muscle_cell	chr12	1100334	1100335	1100334	+	RAMPAGE_only	56	59	81	1.794578	5.404799	chr12	1100147	1101111	LINE|L2|L2a	-	chr12	1083572	1244956	ERC1|ENST00000536573.6	+	1083572,1104749,1110191,1112214,1115865,1141619,1180539,1181924,1183280,1189858,1236768,1244542	1083580,1104824,1110347,1112307,1116033,1141787,1180677,1182065,1183421,1190052,1236904,1244956	0.950617
cardiac_muscle_cell	chr1	235110584	235110679	235110627	-	RAMPAGE_only	7	7	58	1.285007	4.687163	chr1	235110540	235110668	SINE|MIR|MIR3	-	chr1	235109335	235128936	TOMM20|ENST00000366607.4	-	235109335,235113767,235119817,235122325,235128594	235112108,235113910,235119899,235122372,235128936	0.948276
cardiac_muscle_cell	chr19	58306086	58306087	58306086	+	High_confidence	16	16	18	0.398795	3.614369	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58315183	MSTRG.19539.35	+	58305376,58306087,58312165	58305445,58306216,58315183	0.888889
cardiac_muscle_cell	chr11	83236049	83236074	83236049	+	RAMPAGE_only	3	3	12	0.265863	2.913977	chr11	83236047	83236181	SINE|MIR|MIRc	+	chr11	83227784	83256099	ANKRD42|ENST00000531815.1	+	83227784,83236403,83247942,83255844	83227872,83236509,83248087,83256099	0.500000
cardiac_muscle_cell	chr17	41871754	41871772	41871754	-	RAMPAGE_only	2	2	7	0.155087	2.521641	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.857143
cardiac_muscle_cell	chr15	63056672	63056684	63056683	+	High_confidence	4	5	8	0.177242	2.521641	chr15	63056384	63056694	SINE|Alu|AluY	+	chr15	63056860	63059962	TPM1|ENST00000558400.1	+	63056860,63059562	63057118,63059962	0.750000
cardiac_muscle_cell	chr11	100304686	100304710	100304686	+	RAMPAGE_only	4	4	9	0.199398	3.169925	chr11	100304723	100304932	SINE|MIR|MIR	+	chr11	100191176	100356289	CNTN5|ENST00000524560.1	+	100191176,100193487,100255759,100271091,100297624,100299161,100308358,100340462,100341092,100350701,100356116	100191253,100193663,100255918,100271241,100297695,100299396,100308468,100340649,100341205,100350870,100356289	0.888889
cardiac_muscle_cell	chr18	36807846	36807866	36807863	-	High_confidence	4	4	13	0.288019	2.777363	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.923077
cardiac_muscle_cell	chr4	88297315	88297316	88297315	+	RAMPAGE_only	11	11	13	0.288019	3.251629	chr4	88297121	88297585	LTR|ERVL-MaLR|MLT1H	+	chr4	88284929	88341657	LOC105369192|NR_134238.1	+	88284929,88311795,88316685,88340861,88341302	88285061,88311871,88316807,88340952,88341657	0.615385
cardiac_muscle_cell	chr3	31533540	31533557	31533556	+	High_confidence	6	6	11	0.243708	3.095795	chr3	31533377	31533564	LINE|L1|L1M4b	-	chr3	31533624	31617005	STT3B|ENST00000462235.5	+	31533624,31576395,31579808,31596797,31600359,31615104,31616928	31533686,31576504,31580096,31596863,31600459,31615203,31617005	0.909091
cardiac_muscle_cell	chr2	164839350	164839377	164839360	+	RAMPAGE_only	5	5	14	0.310174	3.026987	chr2	164839310	164839440	SINE|Alu|AluJr	+	chr2	164840671	165094117	AC019197.1|ENST00000638199.1	+	164840671,164848841,164945583,164949934,164959254,164960898,165091119,165091829	164840822,164849402,164945671,164950133,164959329,164960967,165091299,165094117	0.857143
cardiac_muscle_cell	chr20	3795750	3795789	3795788	+	High_confidence	14	14	61	1.351473	5.096804	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.967213
cardiac_muscle_cell	chr1	41243836	41243856	41243855	-	RAMPAGE_only	208	220	755	16.727242	7.147964	chr1	41243611	41244191	LTR|ERVL-MaLR|MLT1E3	-	chr1	41027198	41242143	SCMH1|NM_001172218.1	-	41027198,41028583,41037361,41046406,41048689,41070594,41075218,41113282,41116921,41142877,41151613,41159724,41160874,41161363,41186120,41242058	41028319,41028726,41037541,41046598,41048890,41070721,41075451,41113526,41117010,41143112,41151684,41159933,41160898,41161432,41186250,41242143	0.556291
cardiac_muscle_cell	chr19	37346321	37346335	37346321	+	High_confidence	6	6	20	0.443106	4.037401	chr19	37346204	37346404	SINE|MIR|MIR	-	chr19	37346296	37364447	HKR1|ENST00000541583.6	+	37346296,37347189,37347776,37362108	37346492,37347316,37347872,37364447	0.800000
cardiac_muscle_cell	chr14	50756826	50756827	50756826	-	RAMPAGE_only	5	5	8	0.177242	2.521641	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.875000
cardiac_muscle_cell	chr6	122482211	122482236	122482227	+	High_confidence	5	5	13	0.288019	3.546594	chr6	122481961	122482259	SINE|Alu|AluYe5	-	chr6	122482087	122726971	MSTRG.31822.8	+	122482087,122509451,122581764,122585920,122633282,122675077,122717786,122725127	122482266,122509525,122581844,122586007,122633367,122675144,122717963,122726971	0.923077
cardiac_muscle_cell	chr3	27821596	27821597	27821596	+	RAMPAGE_only	8	8	11	0.243708	2.521928	chr3	27815983	27821983	LINE|L1|L1PA7	-	chr3	27802761	27860327	LINC01980|ENST00000425195.6	+	27802761,27824649,27848700,27860086	27802850,27824748,27848764,27860327	0.727273
cardiac_muscle_cell	chrX	131578790	131578931	131578913	-	High_confidence	20	20	90	1.993976	5.512531	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.800000
cardiac_muscle_cell	chr1	116390239	116390372	116390239	+	RAMPAGE_only	16	20	331	7.333400	5.515988	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.936556
cardiac_muscle_cell	chr4	15279145	15279165	15279145	-	RAMPAGE_only	5	5	10	0.221553	2.947703	chr4	15278666	15284652	LINE|L1|L1PA2	+	chr4	15004941	15427914	AC098829.1|ENST00000502344.5	-	15004941,15006470,15010492,15017801,15263396,15427828	15005157,15006570,15010572,15017881,15263464,15427914	0.500000
cardiac_muscle_cell	chr19	10825211	10825216	10825215	+	RAMPAGE_only	3	3	7	0.155087	2.521641	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	0.857143
cardiac_muscle_cell	chr2	169089343	169089347	169089346	+	RAMPAGE_only	5	6	12	0.265863	3.277613	chr2	169089308	169089394	LTR|ERVL|LTR33	-	chr2	169081106	169096167	DHRS9|NM_001142271.1	+	169081106,169081522,169083328,169091789,169095543	169081152,169081894,169083587,169091953,169096167	0.916667
cardiac_muscle_cell	chr14	102247965	102248003	102247965	-	High_confidence	6	6	17	0.376640	3.454822	chr14	102246370	102248154	LTR|ERV1|HERVFH21-int	+	chr14	102225945	102247464	MOK|ENST00000557823.5	-	102225945,102233687,102247394	102226408,102233789,102247464	0.588235
cardiac_muscle_cell	chr4	127656067	127656087	127656067	+	RAMPAGE_only	3	3	11	0.243708	2.663533	chr4	127650220	127656245	LINE|L1|L1PA2	-	chr4	127632965	127716479	INTU|ENST00000503952.5	+	127632965,127643520,127656635,127663380,127669035,127674123,127684408,127685441,127687740,127700009,127704227,127705590,127706486,127708570,127710912,127713935,127716324	127633180,127644056,127656721,127663584,127669154,127674213,127684486,127685569,127687867,127700063,127704290,127705812,127706969,127708668,127711102,127714093,127716479	1.000000
cardiac_muscle_cell	chr14	102235458	102235481	102235458	-	High_confidence	4	4	12	0.265863	3.084963	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.500000
cardiac_muscle_cell	chr10	99431508	99431516	99431508	-	High_confidence	9	9	25	0.553882	3.371654	chr10	99431456	99431604	LINE|L2|L2c	+	chr10	99396869	99431569	GOT1|ENST00000370508.6	-	99396869,99402579,99403468,99403723,99405755,99406136,99406725,99420623,99430447	99397686,99402722,99403634,99403874,99405860,99406249,99406849,99420805,99431569	0.960000
cardiac_muscle_cell	chr16	27229197	27229198	27229197	-	RAMPAGE_only	5	5	7	0.155087	2.521641	chr16	27229101	27229466	LINE|L2|L2b	+	chr16	27225024	27268741	NSMCE1|ENST00000565070.5	-	27225024,27225725,27233000,27234187,27235177,27257434,27268705	27225236,27226836,27233147,27234265,27235299,27257581,27268741	0.571429
cardiac_muscle_cell	chr12	55516318	55516319	55516318	+	RAMPAGE_only	8	8	8	0.177242	2.750000	chr12	55515725	55517184	LINE|L1|L1M1	+	chr12	56158160	56161574	MYL6|ENST00000550697.5	+	56158160,56158683,56159586,56159974,56160242,56160625,56161386	56158404,56158711,56159730,56160148,56160320,56160670,56161574	0.875000
cardiac_muscle_cell	chr5	997302	997319	997318	-	High_confidence	13	13	29	0.642503	4.254525	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.862069
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	150572478	150572529	150572528	+	RAMPAGE_only	4	4	15	0.593084	3.456565	chr3	150572572	150572872	SINE|Alu|AluSz	+	chr3	150568031	150584234	EIF2A|ENST00000465535.1	+	150568031,150568175,150571957,150575648,150583199,150583845	150568046,150568292,150572529,150575762,150583265,150584234	0.600000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	50750550	50750574	50750573	-	RAMPAGE_only	2	2	7	0.276772	2.584963	chr2	50750481	50750604	LINE|L1|L1PA5	+	chr2	50745468	51027703	MSTRG.12708.65	-	50745468,50757987,50795615,50868175,50925937,51027501	50757764,50795553,50868141,50922687,50925955,51027703	0.857143
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	32403115	32403233	32403145	-	RAMPAGE_only	5	5	54	2.135101	4.926119	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.962963
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	59620042	59620089	59620042	+	High_confidence	6	10	45	1.779251	4.802915	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.688889
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	67318761	67318775	67318761	+	RAMPAGE_only	1	1	7	0.276772	2.584963	chr12	67318670	67318923	LINE|L2|L2c	-	chr12	67269280	67319951	CAND1|ENST00000545606.5	+	67269280,67281909,67292621,67295032,67297406,67297747,67298949,67302322,67304604,67305103,67307396,67309900,67310151,67311692,67312605	67269785,67282053,67292776,67295156,67297663,67297853,67299095,67302615,67304746,67306597,67307492,67310070,67310316,67311800,67319951	0.857143
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	175871048	175871055	175871048	+	High_confidence	4	4	11	0.434928	3.277613	chr5	175870919	175871155	LINE|L2|L2b	-	chr5	175871497	175880170	CPLX2|ENST00000393745.7	+	175871497,175878651,175878907,175879847	175871705,175878770,175879083,175880170	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	91179462	91179526	91179462	-	High_confidence	381	395	1640	64.843810	7.494611	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.857927
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	63618045	63618046	63618045	-	High_confidence	17	22	25	0.988473	4.163856	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.640000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	183116041	183116042	183116041	-	High_confidence	7	7	8	0.316311	2.521641	chr3	183115868	183116225	LTR|ERV1|MER51E	-	chr3	183015217	183116075	MCCC1|ENST00000492597.5	-	183015217,183017265,183020129,183022416,183025754,183033990,183037217,183039025,183041566,183045412,183052158,183057310,183070998,183071209,183072365,183086692,183094558,183115473	183015566,183017337,183020237,183022554,183025804,183034077,183037434,183039135,183041750,183045540,183052240,183057422,183071120,183071357,183072487,183086788,183094605,183116075	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	41978605	41978630	41978629	-	RAMPAGE_only	6	6	18	0.711700	3.572469	chr19	41978480	41978588	LINE|L2|L2b	-	chr19	41966581	41993467	ATP1A3|NM_001256213.1	-	41966581,41967248,41967661,41968784,41969434,41970184,41970387,41975628,41976415,41977935,41978150,41978605,41981501,41981721,41981907,41984917,41985305,41985863,41986115,41987935,41988317,41988475,41993392	41966965,41967340,41967763,41968915,41969580,41970308,41970542,41975797,41976566,41978072,41978326,41978798,41981636,41981831,41982106,41985186,41985423,41985998,41986229,41988139,41988377,41988562,41993467	0.888889
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	107580245	107580267	107580264	+	High_confidence	695	695	3367	133.127504	7.154535	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.914464
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	140700445	140700452	140700445	+	High_confidence	1932	2204	3428	135.539378	4.691183	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.987456
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr22	50783134	50783156	50783144	+	High_confidence	2	4	11	0.434928	2.646439	chr22	50783102	50783247	SINE|Alu|AluJr	-	chr22	50783253	50799305	RPL23AP82|ENST00000467796.5	+	50783253,50785172,50798654	50783294,50785293,50799305	0.818182
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	85293051	85293082	85293051	+	RAMPAGE_only	3	3	10	0.395389	3.321928	chr3	85289930	85295940	LINE|L1|L1PA2	+	chr3	84959004	85381395	MSTRG.15972.4	+	84959004,85238956,85352888,85373786	84959668,85352702,85373738,85381395	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	122789084	122789118	122789084	+	High_confidence	3	3	9	0.355850	3.169925	chr6	122788977	122789115	LTR|ERV1|PrimLTR79	+	chr6	122789048	122809720	SMPDL3A|NM_006714.4	+	122789048,122795676,122796823,122801309,122803663,122804908,122806232,122809090	122789458,122795890,122796968,122801406,122803833,122805089,122806357,122809720	0.777778
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr22	42519287	42519288	42519287	+	RAMPAGE_only	6	6	9	0.355850	2.500000	chr22	42519127	42519409	LINE|L2|L2c	-	chr22	42553858	42574381	SERHL2|ENST00000477564.5	+	42553858,42554937,42555231,42555663,42556063,42556513,42558347,42560185,42571120,42572435,42573935	42554042,42555087,42555345,42555705,42556083,42556588,42558457,42560265,42571901,42572529,42574381	0.555556
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	23939538	23939587	23939565	+	High_confidence	5	5	24	0.948934	3.970573	chr2	23939241	23939827	LTR|ERV1|MER92B	-	chr2	23940418	24004909	UBXN2A|ENST00000309033.4	+	23940418,23958300,23971275,23976968,23982895,23984672,23999671	23940648,23958355,23971414,23977075,23983033,23984831,24004909	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr21	37084215	37084257	37084256	+	RAMPAGE_only	3	3	9	0.355850	2.503258	chr21	37084122	37084370	LINE|L2|L2	-	chr21	37082946	37203107	TTC3|NM_003316.3	+	37082946,37087246,37087832,37088195,37088798,37090232,37091292,37094004,37095349,37096580,37108391,37121816,37122982,37124618,37126079,37129002,37132681,37135379,37138633,37140560,37144524,37147480,37148545,37150077,37150819,37151892,37152950,37156654,37159698,37160801,37161989,37164050,37165549,37167554,37172594,37182773,37185705,37187048,37188494,37191333,37192111,37195674,37197569,37197881,37200231,37201439	37084331,37087401,37087875,37088346,37088886,37090286,37091413,37094090,37095444,37096643,37108446,37121979,37123028,37124742,37126143,37129063,37132766,37135514,37138714,37140673,37144645,37147603,37148647,37150170,37150884,37152029,37153277,37156906,37159745,37160858,37162063,37164215,37166615,37167620,37172744,37182913,37185774,37187145,37188595,37191424,37192213,37196036,37197696,37198025,37200324,37203107	0.666667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	100268275	100268284	100268280	+	RAMPAGE_only	2	2	8	0.316311	2.807355	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266288	100292769	MSTRG.1125.5	+	100266288,100266523,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100292769	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	37058871	37058899	37058895	-	RAMPAGE_only	2	2	8	0.316311	2.521641	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr20	3795750	3795783	3795750	+	High_confidence	9	9	57	2.253718	5.244999	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.982456
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	93253875	93253893	93253875	+	High_confidence	3	3	12	0.474467	3.584963	chr1	93253572	93253948	LINE|L1|L1M1	-	chr1	93254516	93264947	CCDC18|ENST00000447456.1	+	93254516,93256334,93258747,93264700	93254614,93256538,93258885,93264947	0.833333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	48683361	48683363	48683362	+	High_confidence	12	20	20	0.790778	3.426367	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.950000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	122882295	122882306	122882305	+	High_confidence	3	4	7	0.276772	2.521641	chr11	122881733	122882629	LINE|L1|L1ME3D	-	chr11	122882527	122905892	C11orf63|NM_199124.2	+	122882527,122885760,122903924,122905171	122882972,122886193,122904444,122905892	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	112459210	112459223	112459210	+	RAMPAGE_only	5	5	12	0.474467	3.418296	chr9	112459247	112459316	LINE|L2|L2c	+	chr9	112380121	112459537	HSDL2|ENST00000467434.5	+	112380121,112405623,112408906,112418859,112438430,112441698,112454012,112459448	112380180,112405722,112409021,112418958,112438625,112441770,112454162,112459537	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	46087060	46087083	46087060	-	High_confidence	2	2	9	0.355850	3.169925	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.777778
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	114285928	114285948	114285947	+	High_confidence	8	8	13	0.514006	3.392747	chr13	114285920	114286050	LINE|L1|L1ME1	-	chr13	114285974	114291718	UPF3A|ENST00000481131.5	+	114285974,114286518,114291488,114291633	114286400,114286629,114291544,114291718	0.923077
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	3783651	3783667	3783651	-	RAMPAGE_only	4	4	8	0.316311	2.750000	chr3	3783609	3783698	LINE|CR1|L3b	-	chr3	3700813	3800875	SUMF1|ENST00000470751.5	-	3700813,3777724,3779240,3782502,3788913,3800700	3702461,3777803,3779322,3782701,3789074,3800875	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	96303166	96303177	96303166	-	RAMPAGE_only	7	7	13	0.514006	3.238901	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	160199150	160199156	160199150	+	High_confidence	75	77	141	5.574986	4.813656	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.929078
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	163426340	163426341	163426340	+	RAMPAGE_only	4	5	7	0.276772	2.807355	chr6	163425976	163427403	LINE|L1|L1MC5a	-	chr6	163428994	163534984	QKI|ENST00000545346.1	+	163428994,163455278,163457380,163478779,163534981	163429017,163455421,163457551,163478896,163534984	0.571429
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	134527596	134527597	134527596	+	High_confidence	354	364	369	14.589857	6.762412	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.967480
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	64989995	64990045	64989995	-	RAMPAGE_only	3	3	19	0.751239	3.614369	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.894737
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	44914395	44914410	44914395	+	High_confidence	2	2	7	0.276772	2.521641	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	26213702	26213739	26213738	-	RAMPAGE_only	5	5	15	0.593084	3.640224	chr14	26213640	26213876	LINE|L2|L2c	+	chr14	25647303	26143305	LINC02306|ENST00000546412.2	-	25647303,25649798,25660845,25663482,25664734,25835849,25837128,25838459,26126156,26143106	25649257,25649905,25660927,25663550,25664975,25835974,25837211,25838530,26126215,26143305	0.733333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	123061128	123061297	123061256	-	High_confidence	23	24	139	5.495908	5.448144	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.913669
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	122882365	122882398	122882365	+	High_confidence	5	5	24	0.948934	3.740602	chr11	122881733	122882629	LINE|L1|L1ME3D	-	chr11	122882527	122905892	C11orf63|NM_199124.2	+	122882527,122885760,122903924,122905171	122882972,122886193,122904444,122905892	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	127543805	127543810	127543809	-	RAMPAGE_only	7	8	12	0.474467	3.095795	chr9	127543678	127543822	LINE|L2|L2c	+	chr9	127507171	127568953	FAM129B|ENST00000468379.1	-	127507171,127507866,127525057,127527193,127531647,127568819	127507431,127507934,127525163,127527322,127531778,127568953	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	52579438	52579439	52579438	+	RAMPAGE_only	6	6	8	0.316311	2.521641	chr6	52579191	52579722	LTR|ERVL-MaLR|MLT1F1	+	chr6	52578365	52583559	TRAM2-AS1|ENST00000605910.1	+	52578365,52578501,52579374,52582862	52578393,52578594,52579609,52583559	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	59708639	59708640	59708639	-	RAMPAGE_only	7	7	7	0.276772	2.521641	chr13	59708300	59708705	LINE|L2|L2-3_Crp	+	chr13	59665691	59751021	DIAPH3|ENST00000649952.1	-	59665691,59750838	59666846,59751021	0.857143
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	62255185	62255195	62255194	+	RAMPAGE_only	3	3	8	0.316311	2.521641	chr3	62255186	62255301	LINE|RTE-BovB|MamRTE1	-	chr3	62243575	62267813	PTPRG|ENST00000485215.5	+	62243575,62255123,62262797,62267409,62267684	62243898,62255215,62262894,62267492,62267813	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	158228657	158228666	158228657	-	RAMPAGE_only	6	6	11	0.434928	3.095795	chr4	158226186	158228751	LTR|ERV1|Harlequin-int	-	chr4	158199104	158200442	AC098679.1|ENST00000513067.1	-	158199104,158200323	158199350,158200442	0.636364
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	23420472	23420536	23420535	-	RAMPAGE_only	17	22	39	1.542017	4.892407	chr16	23420437	23420606	LINE|L2|L2c	+	chr16	23398045	23417293	COG7|ENST00000567821.1	-	23398045,23403693,23406075,23410294,23413447,23416966	23398129,23403834,23406262,23410360,23413564,23417293	0.589744
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	141700490	141700507	141700490	+	RAMPAGE_only	4	4	11	0.434928	2.845351	chr3	141698964	141700512	LTR|ERV1|HERVFH21-int	-	chr3	141663198	141721074	LOC646730|NR_136190.1	+	141663198,141666779,141681484,141685058,141685871,141690431,141713291,141720991	141663271,141666932,141681633,141685199,141686017,141690527,141713427,141721074	0.818182
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	176027843	176027858	176027843	-	RAMPAGE_only	4	4	8	0.316311	2.807355	chr1	176027841	176028205	LTR|ERVL-MaLR|THE1B	-	chr1	175944830	176081256	COP1|ENST00000461830.6	-	175944830,175947194,175986942,175988287,176027571,176043185,176043809,176046180,176081151	175945170,175947239,175987103,175989479,176027688,176043203,176043818,176046324,176081256	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	143018381	143018434	143018394	-	High_confidence	15	17	87	3.439885	5.070976	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	142981737	143018390	LY6E-DT|ENST00000517833.1	-	142981737,143018159	142982501,143018390	0.724138
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	54759973	54759974	54759973	-	High_confidence	16	16	18	0.711700	3.794653	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.944444
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	156752092	156752113	156752112	-	High_confidence	8	8	19	0.751239	3.302723	chr1	156752098	156752165	LINE|L2|L2c	-	chr1	156742106	156752232	HDGF|NM_001126051.1	-	156742106,156743651,156744162,156745007,156745296,156752037	156743455,156743878,156744348,156745146,156745373,156752232	0.947368
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	31376356	31376357	31376356	-	High_confidence	12	12	12	0.474467	3.022055	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	81154211	81154222	81154217	-	High_confidence	2	2	8	0.316311	2.521641	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	17910367	17910378	17910367	-	High_confidence	7	7	13	0.514006	3.392747	chr8	17908095	17912373	LTR|ERVK|HERVK-int	-	chr8	17864379	17910365	FGL1|ENST00000398056.6	-	17864379,17868547,17868915,17874018,17874361,17881998,17885491,17895446,17896169,17909884	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17895517,17896416,17910365	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	67183295	67183316	67183295	-	High_confidence	5	5	13	0.514006	2.873141	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67176729	67183941	KIAA0895L|ENST00000563902.1	-	67176729,67178009,67178198,67179429,67179814,67180040,67183261	67176975,67178107,67178504,67179562,67179958,67180666,67183941	0.692308
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	22250956	22250969	22250956	-	RAMPAGE_only	8	8	19	0.751239	3.471354	chr2	22250730	22251099	LTR|ERVL-MaLR|THE1C	-	chr2	21933335	22531105	AC096570.1|ENST00000450551.1	-	21933335,21934966,21971740,22210864,22531035	21933547,21935094,21971836,22210994,22531105	0.684211
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	2242922	2242923	2242922	+	High_confidence	14	14	14	0.553545	3.039149	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	147559948	147559994	147559993	+	High_confidence	92	92	308	12.177984	6.535906	chr5	147559899	147560053	DNA|hAT-Charlie|MER5A1	-	chr5	147559993	147662009	JAKMIP2-AS1|NR_038902.1	+	147559993,147594359,147595439,147660452	147560137,147594477,147595540,147662009	0.652597
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	159005961	159005962	159005961	+	High_confidence	9	9	10	0.395389	3.169925	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.600000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	58578132	58578168	58578132	-	High_confidence	9	10	36	1.423401	4.440351	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.722222
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	65570441	65570466	65570465	+	High_confidence	6	6	11	0.434928	3.095795	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570451	65615757	LINC01515|ENST00000601979.5	+	65570451,65572934,65585484,65585664,65615635	65570545,65573056,65585567,65585802,65615757	0.727273
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	45616366	45616393	45616392	+	High_confidence	3	3	7	0.276772	2.807355	chr1	45616440	45616559	SINE|Alu|FLAM_C	+	chr1	45617236	45618246	NASP|ENST00000472408.1	+	45617236,45618060	45617591,45618246	0.857143
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	123279570	123279617	123279570	-	RAMPAGE_only	3	3	19	0.751239	4.058814	chr8	123279322	123279782	LTR|ERVL-MaLR|MLT1H	-	chr8	123248449	123275541	ZHX1|NR_037873.1	-	123248449,123253321,123267272,123275339	123250320,123256171,123267386,123275541	0.894737
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	72305913	72305914	72305913	-	High_confidence	13	15	16	0.632623	3.373557	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	0.937500
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	36807856	36807870	36807856	-	High_confidence	2	2	10	0.395389	3.169925	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.700000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	113940461	113940479	113940464	-	RAMPAGE_only	4	4	10	0.395389	2.721928	chr12	113940445	113940822	LTR|ERVL|LTR16C	+	chr12	113816741	113966306	RBM19|ENST00000545145.6	-	113816741,113823208,113844667,113858790,113914968,113918391,113920610,113924696,113927053,113937006,113939959,113942323,113945827,113946353,113947333,113948832,113950082,113952511,113955130,113957781,113959211,113959864,113960058,113962231,113966191	113818186,113823321,113844788,113858896,113915085,113918447,113920690,113924757,113927229,113937136,113940160,113942434,113945924,113946475,113947464,113949036,113950154,113952590,113955211,113958050,113959404,113959903,113960178,113962414,113966306	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	182672909	182672924	182672923	-	High_confidence	5	5	12	0.474467	2.845351	chr1	182672886	182673055	DNA|hAT-Charlie|MER5A	+	chr1	182641813	182672932	RGS8|NM_001102450.2	-	182641813,182648136,182665968,182666871,182669623,182671656,182672818	182646917,182648303,182666033,182666973,182669752,182671730,182672932	0.833333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	15657883	15657884	15657883	+	RAMPAGE_only	13	13	13	0.514006	3.180833	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr22	50541367	50541389	50541383	+	RAMPAGE_only	3	3	14	0.553545	3.085055	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	0.928571
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	66407318	66407330	66407318	+	RAMPAGE_only	11	11	30	1.186167	4.418157	chr17	66407182	66407579	LTR|ERVL-MaLR|MSTA	+	chr17	66302859	66775127	PRKCA|ENST00000284384.6	+	66302859,66306095,66496200,66554518,66641354,66645382,66687110,66688301,66688950,66732687,66735488,66738763,66741658,66742621,66773986	66303024,66306127,66496283,66554579,66641466,66645511,66687267,66688436,66689047,66732825,66735662,66738855,66741721,66742760,66775127	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	2610561	2610575	2610561	+	RAMPAGE_only	6	6	12	0.474467	2.584963	chr16	2610448	2610737	SINE|Alu|AluSq2	-	chr16	2603383	2630494	LOC652276|NR_015441.1	+	2603383,2610461,2613959,2628824	2603727,2611052,2614068,2630494	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	149829291	149829322	149829291	+	RAMPAGE_only	2	2	9	0.355850	2.750000	chr2	149828748	149829430	LTR|ERVL-MaLR|MLT1E1A	+	chr2	149587357	149848234	LOC101929231|NR_110240.1	+	149587357,149743717,149847908	149587850,149743759,149848234	0.777778
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	41871699	41871763	41871745	-	RAMPAGE_only	3	3	12	0.474467	2.855389	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.583333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	103129650	103129680	103129650	+	High_confidence	3	3	13	0.514006	3.392747	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	123060124	123060256	123060174	-	High_confidence	20	21	222	8.777638	5.053224	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.693694
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	35449689	35449726	35449689	+	RAMPAGE_only	2	2	11	0.434928	3.121928	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.636364
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	39800293	39800314	39800293	-	High_confidence	31	31	90	3.558502	5.999727	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.644444
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	20658312	20658347	20658338	+	High_confidence	14	17	105	4.151585	5.229656	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	105911795	105911820	105911819	-	RAMPAGE_only	3	3	6	0.237233	2.584963	chr8	105911686	105912062	LTR|ERVL-MaLR|THE1D	-	chr8	105784804	106060477	ZFPM2-AS1|ENST00000524045.6	-	105784804,105787066,105787448,105798324,106059080,106060380	105785217,105787221,105787596,105798442,106059136,106060477	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	53523963	53523964	53523963	-	High_confidence	6	6	8	0.316311	2.521641	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	126070623	126070625	126070623	-	High_confidence	3	5	8	0.316311	2.807355	chr10	126070617	126070770	LINE|CR1|X7A_LINE	-	chr10	126049602	126070633	ADAM12|ENST00000467145.1	-	126049602,126064805,126066716,126070386	126049669,126065001,126066806,126070633	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	92632610	92632784	92632613	+	RAMPAGE_only	5	5	67	2.649107	5.323036	chr4	92632354	92632653	SINE|Alu|AluSz6	+	chr4	92600138	92701936	MSTRG.17302.5	+	92600138,92604523,92653062	92604498,92652649,92701936	0.985075
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	163423160	163423161	163423160	+	High_confidence	17	19	23	0.909395	3.820889	chr6	163423016	163423301	SINE|Alu|AluSx4	+	chr6	163423133	163563454	QKI|ENST00000537041.5	+	163423133,163455278,163478779,163534981,163561981,163563443	163423213,163455421,163478896,163535125,163562069,163563454	0.739130
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	72363490	72363576	72363506	-	High_confidence	4	4	26	1.028012	4.315824	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.538462
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	25244001	25244137	25244078	-	High_confidence	6	6	50	1.976945	3.362102	chr1	25244059	25244116	SINE|Alu|Alu	-	chr1	25242248	25244105	RSRP1|ENST00000569495.5	-	25242248,25242538,25243549	25242426,25242705,25244105	0.980000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	40894498	40894524	40894523	+	High_confidence	4	4	14	0.553545	3.039149	chr15	40894565	40894630	LINE|CR1|X6A_LINE	+	chr15	40894466	40902861	VPS18|ENST00000558474.1	+	40894466,40895937,40898906,40902615	40894859,40896079,40898998,40902861	0.857143
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	15532258	15532277	15532258	-	RAMPAGE_only	7	7	14	0.553545	3.546594	chr17	15532101	15532724	LINE|L1|L1M4	-	chr17	15438157	15563468	MSTRG.9518.8	-	15438157,15440207,15503097,15540432,15547058,15555281,15563436	15438200,15440285,15538153,15545916,15547148,15555364,15563468	0.928571
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	2667167	2667196	2667195	+	High_confidence	5	5	10	0.395389	2.521928	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.800000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	31355180	31355221	31355211	+	RAMPAGE_only	2	3	10	0.395389	3.169925	chr10	31355121	31355304	SINE|MIR|MIRc	-	chr10	31321689	31461180	MSTRG.2528.23	+	31321689,31373017,31387123,31461036	31358333,31373173,31387266,31461180	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	121313938	121314003	121314002	+	RAMPAGE_only	14	14	51	2.016484	4.112643	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.921569
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	149218620	149218625	149218620	+	High_confidence	5	6	11	0.434928	2.721928	chr6	149218600	149218675	SINE|MIR|MIR3	-	chr6	149218697	149244072	AL031056.1|ENST00000445901.1	+	149218697,149243728	149218776,149244072	0.545455
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	232816695	232816752	232816731	+	RAMPAGE_only	4	4	16	0.632623	3.456565	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.937500
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	51354419	51354422	51354419	-	High_confidence	5	5	12	0.474467	3.459432	chr19	51354373	51354482	SINE|MIR|MIR3	-	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.916667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	153967486	153967512	153967486	+	High_confidence	9	10	18	0.711700	3.292770	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.666667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	139364647	139364663	139364647	+	RAMPAGE_only	1	1	7	0.276772	2.584963	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.571429
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	8697182	8697216	8697193	+	High_confidence	11	11	36	1.423401	4.371178	chr12	8697043	8697239	SINE|MIR|MIRc	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.833333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	39369871	39369894	39369893	-	RAMPAGE_only	7	7	16	0.632623	3.640224	chr12	39369860	39369969	LINE|Penelope|Penelope1_Vert	+	chr12	39293228	39442943	KIF21A|ENST00000636569.1	-	39293228,39301479,39302964,39304820,39307564,39309585,39311416,39315228,39315931,39318072,39319905,39322667,39325838,39326263,39330241,39330745,39331689,39332213,39332590,39332892,39333211,39337095,39340164,39340905,39341504,39342033,39351776,39356831,39357247,39358177,39363097,39366349,39367029,39367882,39369728,39370038,39442926	39294517,39301679,39303135,39304938,39307729,39309766,39311553,39315243,39315970,39318201,39320013,39322882,39325893,39326324,39330262,39330911,39331791,39332408,39332744,39333107,39333280,39337203,39340364,39341094,39341622,39342124,39351980,39356895,39357437,39358373,39363213,39366517,39367164,39368032,39369911,39370261,39442943	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	47171401	47171430	47171401	-	RAMPAGE_only	4	4	9	0.355850	2.725481	chr2	47171391	47171495	SINE|MIR|MIRb	-	chr2	47160081	47174207	CALM2|NM_001305626.1	-	47160081,47161722,47162285,47162518,47170733	47160804,47161858,47162392,47162662,47174207	0.777778
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	31587195	31587244	31587195	+	High_confidence	5	6	36	1.423401	4.571861	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.972222
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	2205788	2205875	2205867	+	High_confidence	23	24	296	11.703517	5.171961	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.996622
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	61949792	61949821	61949820	+	High_confidence	9	11	31	1.225706	3.719852	chr11	61949804	61949945	SINE|MIR|MIR3	-	chr11	61949820	61964461	BEST1|ENST00000378043.8	+	61949820,61951770,61955106,61955717,61956843,61957386,61958145,61959497,61959891,61962254,61964103	61950427,61951958,61955201,61955951,61956998,61957464,61958298,61959578,61960043,61962893,61964461	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	84910564	84910694	84910693	-	RAMPAGE_only	15	15	104	4.112046	5.261077	chr12	84910504	84910928	LTR|ERV1|LTR46	+	chr12	84891832	84912024	SLC6A15|ENST00000549540.1	-	84891832,84911937	84892308,84912024	0.817308
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	164822059	164822062	164822059	-	High_confidence	8	8	13	0.514006	3.418296	chr6	164818472	164822156	LINE|L1|L1MA2	+	chr6	164793376	164822063	MEAT6|NR_131926.1	-	164793376,164804955,164805695,164821937	164794152,164805090,164805729,164822063	0.538462
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	75248150	75248186	75248150	-	High_confidence	10	10	16	0.632623	3.030639	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.687500
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	238486008	238486043	238486034	-	High_confidence	12	15	74	2.925879	5.401691	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.729730
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	59619894	59619923	59619894	+	High_confidence	929	1132	2999	118.577186	5.787490	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.950317
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	30499535	30499551	30499535	-	High_confidence	6	6	15	0.593084	2.973557	chr16	30499510	30499629	SINE|MIR|MIR1_Amn	+	chr16	30498765	30499554	AC116348.2|ENST00000563751.1	-	30498765,30499363	30499151,30499554	0.933333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	20423687	20423704	20423703	-	RAMPAGE_only	9	13	33	1.304784	3.885828	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.757576
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	4462004	4462005	4462004	-	High_confidence	7	7	10	0.395389	2.725481	chr4	4461848	4462205	LTR|ERVL|LTR79	+	chr4	4425160	4461954	STX18|ENST00000512195.5	-	4425160,4434769,4438393,4457190,4457422,4459371,4461905	4425222,4434858,4438509,4457257,4457500,4459487,4461954	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	42959478	42959479	42959478	+	High_confidence	5	5	7	0.276772	2.521641	chr1	42959490	42959595	LINE|L2|L2c	+	chr1	42959048	42983358	SLC2A1-AS1|NR_033967.1	+	42959048,42970248,42973973,42983124	42959577,42970394,42974188,42983358	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	69314828	69314832	69314828	-	High_confidence	2	2	7	0.276772	2.584963	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69246950	69315425	ABCA5|ENST00000588877.5	-	69246950,69248261,69249904,69250471,69251746,69253572,69253793,69254314,69255542,69255732,69256156,69259705,69260337,69261124,69261634,69264734,69267942,69270612,69271161,69273958,69277640,69283952,69285897,69286220,69287612,69289176,69289861,69291215,69294654,69297190,69301138,69302717,69304668,69306724,69308279,69309261,69313091,69314313	69247644,69248317,69249984,69250621,69251866,69253667,69253869,69254490,69255634,69255850,69256283,69259797,69260412,69261259,69261748,69264905,69268056,69270750,69271289,69274128,69277842,69284072,69286037,69286311,69287751,69289296,69290037,69291326,69294713,69297359,69301286,69302906,69304810,69306954,69308368,69309423,69313296,69315425	0.571429
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	217363	217378	217363	+	High_confidence	87	94	186	7.354237	6.220707	chr3	217318	217820	LINE|L2|L2a	-	chr3	217534	328223	CHL1|ENST00000449294.6	+	217534,244612,319682,325958,328166	217700,244692,319867,326064,328223	0.854839
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	203015483	203015504	203015483	+	High_confidence	6	6	12	0.474467	2.913977	chr2	203015479	203015763	SINE|Alu|AluSx1	-	chr2	203015790	203041857	NBEAL1|ENST00000492870.1	+	203015790,203016155,203041764	203015864,203016427,203041857	0.833333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	47743725	47743747	47743727	+	High_confidence	10	22	42	1.660634	5.136249	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.761905
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	73080423	73080457	73080433	-	High_confidence	12	14	73	2.886340	5.638254	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.931507
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	80374518	80374542	80374541	-	High_confidence	5	5	9	0.355850	2.947703	chr7	80374347	80374986	LINE|RTE-X|L4_B_Mam	+	chr7	80371920	80374469	AC004862.1|ENST00000605580.1	-	80371920,80373811,80374340	80372294,80373990,80374469	0.666667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	65181200	65181216	65181200	+	High_confidence	4	4	9	0.355850	2.503258	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181193	65212006	CAPN1|ENST00000533820.5	+	65181193,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	102431228	102431248	102431247	-	High_confidence	22	23	87	3.439885	5.220957	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.850575
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	109383402	109383465	109383448	-	High_confidence	2	3	20	0.790778	4.121928	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.950000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	187250276	187250291	187250276	-	RAMPAGE_only	3	3	9	0.355850	2.750000	chr3	187250141	187250238	LINE|CR1|L3	-	chr3	187247158	187291882	MASP1|ENST00000392470.6	-	187247158,187250250,187251633,187253167,187256663,187260740,187262542,187285824,187291244,187291627	187247385,187250329,187251752,187253315,187256860,187260872,187262720,187286056,187291350,187291882	0.555556
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	73567616	73567641	73567616	+	High_confidence	7	7	21	0.830317	3.844233	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.952381
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	38825360	38825367	38825360	+	RAMPAGE_only	3	3	14	0.553545	3.467720	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.928571
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	212475229	212475374	212475239	-	RAMPAGE_only	7	7	64	2.530490	4.375153	chr2	212475180	212475355	DNA|hAT-Tip100|MER45A	+	chr2	212408265	212538529	MSTRG.13750.11	-	212408265,212426361	212426275,212538529	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	64559811	64559832	64559811	+	RAMPAGE_only	7	7	20	0.790778	3.892407	chr1	64559678	64561161	LINE|L1|L1MEf	-	chr1	64563676	64693058	CACHD1|ENST00000470527.1	+	64563676,64582155,64602805,64613487,64629354,64632598,64634043,64641819,64647800,64652160,64653757,64654685,64658704,64663694,64664497,64666056,64671563,64673157,64673347,64675400,64675896,64676894,64678158,64679594,64681257,64682004,64691322	64563844,64582304,64602912,64613518,64629481,64632743,64634260,64641969,64648034,64652310,64653881,64654803,64658873,64663837,64664679,64666167,64671686,64673257,64673464,64675561,64675983,64677011,64678310,64679756,64681335,64682106,64693058	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	184537549	184537596	184537565	-	High_confidence	8	14	59	2.332796	4.972907	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.542373
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	51905849	51905850	51905849	+	RAMPAGE_only	6	6	9	0.355850	2.500000	chr14	51905656	51906021	LTR|ERVL-MaLR|THE1C	+	chr14	51877591	51969800	GNG2|ENST00000556752.2	+	51877591,51950649,51966558	51877657,51950765,51969800	0.777778
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	59651208	59651265	59651208	+	RAMPAGE_only	3	3	19	0.751239	3.197160	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.947368
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	122322556	122322583	122322566	-	RAMPAGE_only	3	3	8	0.316311	2.807355	chr11	122322142	122322989	LINE|L2|L2c	+	chr11	122089195	122309451	MIR100HG|ENST00000648734.1	-	122089195,122155550,122180335,122202763,122292283,122309249	122091719,122155632,122180398,122202909,122292403,122309451	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	86482561	86482578	86482577	+	RAMPAGE_only	9	10	21	0.830317	3.721928	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.761905
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	1655450	1655475	1655450	-	RAMPAGE_only	2	3	10	0.395389	2.947703	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.700000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	78956519	78956529	78956519	-	RAMPAGE_only	3	3	7	0.276772	2.584963	chr6	78956249	78956547	LINE|L2|L2	+	chr6	78940545	78982943	PHIP|ENST00000479165.1	-	78940545,78945299,78946000,78946710,78947622,78954813,78955231,78955612,78961689,78963096,78965702,78965944,78969834,78970048,78970780,78978591,78982885	78941330,78945497,78946260,78946874,78947775,78954963,78955282,78958600,78961810,78963252,78965764,78966056,78969917,78970173,78970888,78978711,78982943	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	130088237	130088241	130088238	+	High_confidence	57	82	130	5.140058	6.111575	chr9	130088096	130088536	LINE|L2|L2a	+	chr9	130088230	130127531	MSTRG.23299.7	+	130088230,130090875,130092247,130099456,130100628,130101105,130104419,130107495,130124914,130127482	130088330,130090983,130092381,130099532,130100702,130101223,130104550,130107539,130124964,130127531	0.861538
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	111841427	111841474	111841445	-	High_confidence	4	4	10	0.395389	3.121928	chr12	111841073	111841497	LINE|L2|L2b	+	chr12	111839766	111841902	MAPKAPK5-AS1|ENST00000443596.1	-	111839766,111841683	111840477,111841902	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	81442201	81442214	81442213	-	RAMPAGE_only	5	5	10	0.395389	2.725481	chr8	81441615	81442280	LINE|L1|L1MC4	-	chr8	81440325	81447484	PMP2|NM_002677.3	-	81440325,81444499,81444816,81447313	81443448,81444601,81444989,81447484	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	4335276	4335283	4335282	-	RAMPAGE_only	25	25	42	1.660634	3.939354	chr17	4335012	4335548	LINE|L1|L1M8	+	chr17	4282898	4331923	UBE2G1|ENST00000571953.5	-	4282898,4289229,4296716,4307020,4331773	4282921,4289408,4296814,4307123,4331923	0.809524
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	28681084	28681085	28681084	+	RAMPAGE_only	14	14	14	0.553545	3.521641	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	123390760	123390765	123390760	+	High_confidence	5	5	10	0.395389	2.641604	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.700000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr22	23696415	23696478	23696415	+	High_confidence	2	2	16	0.632623	3.625000	chr22	23696381	23696442	SINE|MIR|MIRb	-	chr22	23696483	23699176	RGL4|ENST00000452208.1	+	23696483,23697170,23697837,23698211,23698843	23696688,23697245,23697861,23698333,23699176	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	28291847	28291848	28291847	+	High_confidence	28	30	31	1.225706	4.415061	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.645161
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	158173024	158173025	158173024	-	High_confidence	91	91	123	4.863286	5.655702	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.926829
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	151539265	151539321	151539265	-	RAMPAGE_only	14	14	53	2.095562	4.528023	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.660377
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	8436025	8436026	8436025	-	RAMPAGE_only	11	14	16	0.632623	3.875000	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	31117740	31117767	31117740	-	High_confidence	2	2	7	0.276772	2.521641	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	73824192	73824262	73824192	-	RAMPAGE_only	5	5	38	1.502479	4.124050	chrX	73824094	73824164	SINE|MIR|MIRc	-	chrX	73823336	73829691	XIST|ENST00000649757.1	-	73823336,73829067	73827984,73829691	0.921053
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	44646475	44646509	44646505	+	RAMPAGE_only	5	7	25	0.988473	4.243856	chr3	44646305	44646632	LINE|L1|L1MC5a	+	chr3	44625094	44647778	ZNF197|ENST00000334075.6	+	44625094,44629073,44630813,44631061,44632104,44632472,44646490	44625143,44629544,44630946,44631221,44632196,44632599,44647778	0.640000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	53464815	53464850	53464815	+	RAMPAGE_only	3	4	14	0.553545	3.324863	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.785714
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	101912460	101912495	101912494	+	RAMPAGE_only	3	3	16	0.632623	3.456565	chr6	101912442	101912571	LINE|RTE-BovB|MamRTE1	-	chr6	101392941	102035541	MSTRG.19927.5	+	101392941,101398984,101621948,101626379,101676622,101682552,101686179,101799647,101802330,101818369,101859286,101889639,101893067,102035340	101393837,101399392,101622116,101626637,101676804,101682606,101686353,101799791,101802438,101818483,101859493,101893009,101928632,102035541	0.937500
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	77736976	77736996	77736976	-	High_confidence	2	2	8	0.316311	2.807355	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	102449836	102449845	102449836	+	High_confidence	11	11	32	1.265245	4.452820	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	80147920	80147930	80147929	+	High_confidence	12	13	48	1.897868	4.912782	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80147923	80178432	PARD6G-AS1|NR_028340.1	+	80147923,80175879,80178085	80148254,80175935,80178432	0.520833
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	13932172	13932185	13932172	-	High_confidence	1	1	7	0.276772	2.584963	chr5	13932098	13932203	LINE|L2|L2c	-	chr5	13911356	13932456	DNAH5|ENST00000508040.1	-	13911356,13913742,13914519,13916347,13917142,13919175,13920479,13922106,13923279,13928093,13931109,13932040	13911493,13913958,13914642,13916455,13917256,13919401,13920617,13922328,13923440,13928178,13931244,13932456	0.571429
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	663424	663450	663445	+	High_confidence	2	2	9	0.355850	2.725481	chr19	663474	663667	LINE|L2|L2a	+	chr19	663481	669500	AC004156.1|ENST00000591866.2	+	663481,667211	664511,669500	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	12522656	12522683	12522682	+	RAMPAGE_only	6	7	10	0.395389	3.321928	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.800000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	170226587	170226588	170226587	+	High_confidence	45	48	59	2.332796	5.314709	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.593220
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	45862601	45862625	45862613	-	High_confidence	5	5	23	0.909395	3.567040	chr19	45862393	45862941	LINE|L2|L2b	-	chr19	45848829	45863194	SYMPK|ENST00000594293.5	-	45848829,45852311,45852481,45854174,45854390,45861899,45863057	45848876,45852385,45852535,45854240,45854507,45862027,45863194	0.652174
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	20833233	20833234	20833233	-	RAMPAGE_only	6	7	9	0.355850	2.750000	chr16	20833201	20833523	LINE|L1|L1MEi	-	chr16	20797373	20806676	ERI2|ENST00000563117.5	-	20797373,20799262,20799956,20800301,20801202,20802795,20803432,20803602,20805714,20806407	20799067,20799351,20800038,20800402,20801359,20802923,20803516,20803670,20805945,20806676	0.555556
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	39810033	39810099	39810033	-	High_confidence	40	40	226	8.935793	5.742629	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.584071
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	29970353	29970359	29970358	-	High_confidence	7	7	16	0.632623	3.506891	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	151669675	151669724	151669678	-	RAMPAGE_only	10	10	39	1.542017	4.398643	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.948718
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	44304778	44304804	44304778	-	High_confidence	3	3	11	0.434928	3.459432	chr19	44304575	44304734	SINE|MIR|MIR	-	chr19	44288804	44304968	ZNF235|ENST00000591609.1	-	44288804,44298807,44299605,44303389,44304700	44289196,44298903,44299732,44303452,44304968	0.545455
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	24580612	24580623	24580612	+	High_confidence	9	15	25	0.988473	4.023465	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.920000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr20	37298760	37298761	37298760	+	RAMPAGE_only	7	7	7	0.276772	2.521641	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	93695800	93695812	93695800	-	RAMPAGE_only	5	5	11	0.434928	3.027169	chr10	93695744	93695847	SINE|MIR|MIR3	+	chr10	93667882	93702572	FRA10AC1|ENST00000359204.4	-	93667882,93670769,93676652,93681479,93684055,93685245,93687403,93692008,93692645,93694860,93698135,93698300,93700029,93702374	93669868,93670848,93676691,93681598,93684098,93685359,93687449,93692093,93692729,93694937,93698181,93698396,93700106,93702572	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	174874417	174874439	174874418	+	High_confidence	14	20	49	1.937407	4.696854	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.530612
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	9869561	9869591	9869561	-	High_confidence	3	3	13	0.514006	3.392747	chr12	9869538	9869722	DNA|hAT-Charlie|MER105	-	chr12	9856900	9869386	CLEC2B|ENST00000540743.1	-	9856900,9862498,9869204	9857637,9862573,9869386	0.923077
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	243375959	243375977	243375976	+	RAMPAGE_only	3	3	8	0.316311	2.500000	chr1	243375914	243375981	DNA|TcMar-Tigger|Tigger19a	+	chr1	243256055	243500092	SDCCAG8|ENST00000366541.7	+	243256055,243270104,243270977,243274542,243286271,243293090,243304712,243307988,243316754,243330539,243341038,243344214,243378720,243415701,243417967,243426426,243489013,243499755	243256240,243270257,243271063,243274656,243286397,243293219,243304777,243308177,243316893,243330692,243341173,243344331,243378863,243415829,243418076,243426558,243489140,243500092	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	145815086	145815118	145815117	+	High_confidence	3	3	9	0.355850	2.725481	chr6	145815053	145815170	SINE|MIR|MIR3	-	chr6	145814875	145886585	LOC100507557|NR_038244.1	+	145814875,145828360,145881578,145883204	145815431,145828456,145881648,145886585	0.555556
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	39809858	39809914	39809858	-	High_confidence	12	15	52	2.056023	4.238149	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.865385
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	30429288	30429289	30429288	-	RAMPAGE_only	8	11	11	0.434928	2.921928	chr13	30428989	30429302	SINE|Alu|AluSq2	+	chr13	30202629	30307487	KATNAL1|NM_032116.4	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30307330	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307487	0.727273
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	92626589	92626650	92626606	+	RAMPAGE_only	7	7	27	1.067551	4.315824	chr4	92626497	92627160	LINE|L1|L1MEd	+	chr4	92600138	92701936	MSTRG.17302.5	+	92600138,92604523,92653062	92604498,92652649,92701936	0.962963
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	140969934	140969935	140969934	-	RAMPAGE_only	4	4	7	0.276772	2.807355	chr8	140969802	140970308	LTR|ERVL|LTR33B	+	chr8	140879470	140984039	PTK2|ENST00000523803.5	-	140879470,140890542,140925660,140927345,140983841	140879637,140890769,140925749,140927414,140984039	0.571429
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	46540537	46540547	46540546	-	RAMPAGE_only	10	10	24	0.948934	4.004886	chr19	46540383	46540588	LTR|ERVL-MaLR|MLT1B	-	chr19	46480795	46600932	PPP5D1|ENST00000602017.5	-	46480795,46525662,46526924,46600882	46481440,46525784,46527072,46600932	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	94130224	94130244	94130224	-	High_confidence	7	7	12	0.474467	3.277613	chr14	94130148	94130231	LINE|L1|L1ME1	-	chr14	94128376	94129580	IFI27L2|ENST00000556552.1	-	94128376,94129557	94129291,94129580	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	27121398	27121417	27121398	-	RAMPAGE_only	2	3	9	0.355850	3.000000	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	0.666667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	37987981	37987994	37987993	+	High_confidence	18	22	65	2.570029	5.329759	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.769231
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr20	50130092	50130113	50130098	-	RAMPAGE_only	2	2	9	0.355850	2.750000	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.888889
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	24987560	24987585	24987584	+	RAMPAGE_only	3	3	9	0.355850	2.750000	chr15	24987476	24987621	DNA|hAT-Charlie|MER5A	-	chr15	24985052	24988232	PWAR5|ENST00000624480.1	+	24985052	24988232	0.666667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	30535290	30535298	30535290	+	High_confidence	3	3	7	0.276772	2.521641	chr16	30535226	30535680	LTR|ERV1|MER4A1	-	chr16	30534751	30537144	AC002310.1|ENST00000457283.3	+	30534751,30536428	30535480,30537144	0.571429
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	172165645	172165646	172165645	+	RAMPAGE_only	8	8	8	0.316311	2.750000	chr1	172165409	172165862	LINE|L2|L2c	+	chr1	171841499	172408354	DNM3|ENST00000355305.9	+	171841499,171921747,171987655,171988944,172032401,172033104,172038318,172042008,172044384,172048611,172068818,172081831,172092823,172093695,172131174,172253572,172308727,172379017,172387132,172388572,172407771	171841817,171921821,171987805,171989148,172032500,172033265,172038461,172042144,172044452,172048750,172068905,172081902,172092875,172093725,172131288,172253682,172308839,172379182,172387359,172388809,172408354	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	80634697	80634745	80634697	-	RAMPAGE_only	2	2	11	0.434928	3.277613	chr8	80634474	80634795	DNA|hAT-Charlie|MER102b	+	chr8	80628450	80873665	MSTRG.22058.1	-	80628450,80637080,80643034,80659584,80664814,80670502,80687225,80693003,80821373,80873543	80637056,80641477,80643129,80659689,80665082,80670603,80687458,80693107,80821615,80873665	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	115663914	115663915	115663914	+	RAMPAGE_only	8	8	8	0.316311	2.500000	chr3	115663952	115664106	SINE|MIR|MIR	+	chr3	115623509	115721490	GAP43|ENST00000393780.3	+	115623509,115663520,115676012,115720793	115623719,115663916,115676610,115721490	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	6590246	6590300	6590271	+	High_confidence	6	9	38	1.502479	4.681881	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.973684
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	102235451	102235481	102235451	-	High_confidence	4	4	16	0.632623	3.375000	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	89479889	89479890	89479889	-	High_confidence	105	105	105	4.151585	4.603698	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	0.971429
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	31959178	31959202	31959178	+	High_confidence	4	4	13	0.514006	3.418296	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31981060	KIAA1551|ENST00000540924.5	+	31959407,31960776,31980877	31959491,31960871,31981060	0.538462
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	151539183	151539217	151539183	-	RAMPAGE_only	2	2	12	0.474467	3.095795	chr3	151538962	151539152	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.583333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	21075853	21075854	21075853	+	High_confidence	8	8	11	0.434928	2.846439	chr17	21075733	21075870	LINE|L2|L2a	-	chr17	21075555	21090615	LINC01563|ENST00000456235.1	+	21075555,21090267	21075957,21090615	0.636364
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	39341527	39341555	39341554	-	High_confidence	3	3	7	0.276772	2.521641	chr19	39340883	39341633	LINE|L2|L2	+	chr19	39328361	39342372	GMFG|ENST00000600322.5	-	39328361,39328999,39329543,39333076,39335260,39335434,39342291	39328548,39329073,39329626,39333126,39335310,39335531,39342372	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	51028612	51028613	51028612	+	High_confidence	4	5	6	0.237233	2.584963	chr18	51028217	51028743	LTR|ERVL-MaLR|MLT1F2	+	chr18	51028393	51048816	SMAD4|ENST00000588860.5	+	51028393,51046919,51048685	51028665,51047295,51048816	0.833333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	80344452	80344493	80344478	+	RAMPAGE_only	4	4	12	0.474467	2.663533	chr6	80344348	80344644	SINE|Alu|AluSc	-	chr6	80106646	80346270	BCKDHB|ENST00000320393.8	+	80106646,80127546,80129160,80167677,80168874,80171281,80200933,80203101,80273134,80343663	80106889,80127624,80129229,80167811,80169030,80171390,80201031,80203212,80273221,80346270	0.916667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	141332616	141332617	141332616	-	High_confidence	82	82	85	3.360807	4.097612	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.952941
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	71291106	71291181	71291118	+	High_confidence	3	3	17	0.672161	3.499228	chr6	71290785	71291650	LINE|L2|L2	-	chr6	71291361	71293612	OGFRL1|ENST00000467503.1	+	71291361,71293292,71293532	71292020,71293379,71293612	0.764706
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	176943338	176943345	176943338	-	RAMPAGE_only	3	3	8	0.316311	2.521641	chr5	176943235	176943320	DNA|hAT-Charlie|Charlie10	-	chr5	176905065	176970793	UIMC1|ENST00000510698.2	-	176905065,176906010,176907113,176908522,176911310,176943334,176951473,176955958,176958092,176969600,176970741	176905492,176906047,176907177,176908694,176911389,176943488,176951577,176956035,176958154,176969706,176970793	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	81170402	81170423	81170413	-	High_confidence	20	28	86	3.400346	5.418346	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.930233
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	134485443	134485489	134485470	-	High_confidence	31	31	206	8.145015	6.346397	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.927184
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	10521487	10521526	10521525	+	High_confidence	6	6	24	0.948934	3.688722	chr6	10521558	10521623	LINE|L2|L2a	+	chr6	10521484	10621422	GCNT2|ENST00000474518.1	+	10521484,10527473,10528630,10621350	10521594,10527660,10528841,10621422	0.833333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	62897380	62897431	62897430	+	High_confidence	14	14	39	1.542017	4.701746	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.743590
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	95523264	95523276	95523264	-	RAMPAGE_only	4	4	11	0.434928	2.646439	chr4	95523000	95523386	LTR|ERVL|LTR16A1	-	chr4	95162503	95548972	MSTRG.17315.2	-	95162503,95170153,95182896,95185046,95202730,95206627,95218968,95219984,95222209,95242428,95244976,95250486,95278258,95301605,95335409,95358221,95448165	95169399,95170332,95183061,95185196,95202964,95216211,95219313,95220176,95222266,95242593,95245144,95250667,95278362,95301749,95335631,95448078,95548972	0.909091
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	95825758	95825772	95825771	-	RAMPAGE_only	4	4	10	0.395389	2.521928	chr2	95824349	95826979	LINE|L1|L1PA10	-	chr2	95807051	95826981	LINC00342|NR_103734.1	-	95807051,95814049,95824200	95807302,95814145,95826981	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	70075722	70075758	70075757	-	RAMPAGE_only	7	7	21	0.830317	3.880180	chr18	70075732	70075793	LINE|CR1|L3	-	chr18	70003839	70109581	RTTN|ENST00000579986.6	-	70003839,70005197,70006380,70017406,70020614,70024721,70028723,70030011,70030875,70047970,70051410,70054130,70057741,70059849,70073905,70075351,70086612,70087988,70092109,70092675,70109497	70004236,70005267,70006484,70017674,70020817,70024848,70028801,70030109,70030981,70048188,70051548,70054284,70057832,70060042,70073994,70075541,70086684,70088147,70092220,70092804,70109581	0.857143
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	155343321	155343322	155343321	-	RAMPAGE_only	8	8	12	0.474467	3.027169	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	8681673	8681677	8681676	+	High_confidence	6	6	11	0.434928	2.521928	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.636364
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	103577211	103577212	103577211	+	High_confidence	8	9	9	0.355850	3.169925	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	0.888889
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	182121681	182121697	182121681	+	High_confidence	12	12	23	0.909395	3.913977	chr3	182121591	182121699	SINE|tRNA-Deu|AmnSINE2	+	chr3	182121883	182142137	AC012081.1|ENST00000462382.1	+	182121883,182141974	182122197,182142137	0.739130
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	44914321	44914322	44914321	+	High_confidence	111	113	139	5.495908	4.967985	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.884892
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	246417412	246417422	246417412	-	High_confidence	8	8	13	0.514006	3.546594	chr1	246417275	246418033	LTR|ERV1|LTR8B	-	chr1	245749339	246417412	SMYD3|NM_022743.2	-	245749339,245764040,245858495,245863798,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246417295	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246417412	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	129951258	129951312	129951295	-	RAMPAGE_only	4	4	17	0.672161	3.616875	chr11	129951241	129951324	SINE|MIR|MIRb	-	chr11	129899705	129947622	PRDM10|NM_199438.1	-	129899705,129905637,129910475,129912123,129914703,129915659,129917126,129918538,129923247,129924881,129929409,129931015,129932101,129935100,129937597,129942425,129944770,129947144	129902516,129905741,129910656,129912225,129915018,129915860,129917237,129918718,129923403,129925229,129929421,129931258,129932231,129935218,129937670,129942629,129945012,129947622	0.529412
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	118476941	118476989	118476967	+	RAMPAGE_only	3	3	13	0.514006	3.251629	chr7	118476699	118477301	LTR|ERVL|LTR50	-	chr7	118239974	118496171	ANKRD7|ENST00000634332.1	+	118239974,118259836,118322670,118322858,118426976,118431923,118433517,118433883,118443399,118474938,118475916,118477069,118493672,118496039	118239998,118259889,118322711,118322996,118427074,118432019,118433593,118433979,118443535,118475029,118476024,118477139,118493788,118496171	0.538462
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	15740061	15740084	15740061	-	RAMPAGE_only	2	2	12	0.474467	3.277613	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.916667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	183683128	183683197	183683128	+	RAMPAGE_only	4	5	23	0.909395	3.844882	chr3	183682928	183683231	SINE|Alu|AluSx3	-	chr3	183635622	183684519	KLHL24|NM_017644.3	+	183635622,183643479,183650295,183663457,183664920,183671033,183672295,183679085	183635793,183643542,183651276,183663642,183665039,183671222,183672484,183684519	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	41632117	41632159	41632158	-	RAMPAGE_only	6	6	18	0.711700	2.614369	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41516141	41520596	KC6|ENST00000596923.1	-	41516141,41520383	41516555,41520596	0.555556
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	85330237	85330278	85330237	-	RAMPAGE_only	12	14	28	1.107089	4.423252	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	19487898	19487901	19487900	-	High_confidence	8	16	19	0.751239	3.536887	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.894737
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	5726324	5726325	5726324	-	High_confidence	129	134	137	5.416830	5.097584	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.781022
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	60949443	60949447	60949443	-	RAMPAGE_only	5	5	9	0.355850	2.500000	chr1	60949259	60949438	SINE|MIR|MIRb	-	chr1	60940238	60970776	NFIA-AS2|ENST00000438559.5	-	60940238,60941179,60952510,60954321,60954484,60963565,60970547	60940631,60941252,60952684,60954370,60954602,60963804,60970776	0.555556
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	69425654	69425692	69425689	+	High_confidence	27	29	105	4.151585	4.350316	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425689	69429621	AP000439.3|ENST00000545202.1	+	69425689,69427362	69425806,69429621	0.980952
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	12522775	12522818	12522775	+	RAMPAGE_only	4	4	29	1.146628	4.155756	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.620690
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	100829420	100829477	100829476	+	High_confidence	5	5	24	0.948934	4.136842	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829349	100847301	MSTRG.7196.29	+	100829349,100836166,100845457	100831534,100836300,100847301	0.833333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	86453161	86453232	86453202	-	High_confidence	11	17	138	5.456369	5.345874	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.797101
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr20	9079499	9079501	9079499	+	RAMPAGE_only	8	13	13	0.514006	3.392747	chr20	9079212	9079563	LTR|ERVL|LTR33	-	chr20	9069053	9480813	PLCB4|ENST00000378473.7	+	9069053,9217389,9307799,9337125,9338007,9338893,9362895,9365460,9371213,9372302,9373046,9380053,9384200,9387462,9389878,9390530,9393587,9395522,9401489,9405312,9407916,9408632,9409056,9411036,9419806,9421296,9423747,9435559,9437001,9443980,9444177,9453346,9457413,9459634,9468570,9472789,9473278,9478920	9069206,9217452,9307898,9337206,9338067,9339037,9362975,9365514,9371295,9372403,9373104,9380162,9384411,9387556,9389958,9390615,9393678,9395618,9401590,9405348,9408058,9408717,9409181,9411088,9419909,9421461,9423952,9435648,9437152,9444030,9444243,9453462,9457489,9459810,9468672,9472847,9473365,9480813	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	212475831	212475906	212475831	-	RAMPAGE_only	6	7	42	1.660634	4.121673	chr2	212475822	212476001	LINE|L2|L2a	+	chr2	212408265	212538529	MSTRG.13750.11	-	212408265,212426361	212426275,212538529	0.976190
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	112880854	112880886	112880858	-	RAMPAGE_only	24	36	81	3.202652	5.455759	chr7	112880837	112882391	LTR|ERV1|MER52A	+	chr7	112821636	112939618	BMT2|ENST00000432572.1	-	112821636,112832560,112895568,112915305,112935186,112939590	112822373,112832675,112895739,112915447,112935264,112939618	0.790123
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	24995216	24995235	24995218	+	RAMPAGE_only	4	6	10	0.395389	3.121928	chr15	24995035	24995326	SINE|Alu|AluSx4	+	chr15	24981993	25002830	MSTRG.7370.21	+	24981993,24998969,25000244,25001357,25002724	24998486,24999078,25000374,25001713,25002830	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	3782832	3782843	3782842	-	RAMPAGE_only	11	13	34	1.344323	4.712319	chr3	3782417	3783018	LTR|ERVL|MLT2A2	-	chr3	3700813	3800875	SUMF1|ENST00000470751.5	-	3700813,3777724,3779240,3782502,3788913,3800700	3702461,3777803,3779322,3782701,3789074,3800875	0.647059
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr21	39657322	39657337	39657336	+	High_confidence	7	7	21	0.830317	3.384184	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657326	39662889	B3GALT5|ENST00000380618.5	+	39657326,39659752,39660559	39657599,39659912,39662889	0.571429
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	14265553	14265568	14265553	+	RAMPAGE_only	4	5	13	0.514006	3.418296	chr18	14265410	14265727	LTR|ERVL-MaLR|MSTA-int	+	chr18	14337422	14342524	CYP4F35P|ENST00000582957.1	+	14337422,14339511,14340381,14341521	14338896,14339640,14340651,14342524	0.538462
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	71745881	71745936	71745935	+	High_confidence	10	11	49	1.937407	4.210751	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.938776
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	15798658	15798665	15798664	-	RAMPAGE_only	8	9	13	0.514006	2.855389	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.769231
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	65437467	65437645	65437556	+	RAMPAGE_only	10	10	121	4.784208	5.044641	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.983471
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	52236213	52236239	52236238	-	RAMPAGE_only	6	7	20	0.790778	4.142664	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52167708	52291557	AL158066.1|ENST00000451298.1	-	52167708,52169986,52171157,52175638,52180581,52183975,52186682,52189638,52223238,52227004,52229325,52233063,52235219,52253744,52253936,52258528,52279840,52280651,52280861,52283237,52289821,52291506	52169304,52170099,52171248,52175776,52180654,52184114,52186823,52189914,52223331,52227096,52229431,52233144,52235281,52253833,52254018,52258590,52279905,52280715,52280961,52283357,52289983,52291557	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	123181172	123181186	123181172	-	RAMPAGE_only	2	2	6	0.237233	2.584963	chr12	123180971	123181130	SINE|MIR|MIRc	-	chr12	123163768	123176716	MPHOSPH9|ENST00000606321.1	-	123163768,123165301,123166654,123176687	123164090,123165477,123166789,123176716	0.833333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr22	30971696	30971732	30971731	+	High_confidence	3	3	11	0.434928	3.027169	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	95121537	95121594	95121557	-	High_confidence	7	7	41	1.621095	4.834184	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.829268
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	6200699	6200738	6200699	-	High_confidence	2	2	13	0.514006	3.084963	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.769231
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	64007079	64007086	64007085	+	RAMPAGE_only	4	4	11	0.434928	2.646439	chr1	64007065	64007141	SINE|MIR|MIRc	+	chr1	64009302	64181492	ROR1|ENST00000545203.2	+	64009302,64049690,64050685,64137368,64140108,64142404,64158980,64177427	64009376,64049978,64050716,64137496,64140426,64142650,64159192,64181492	0.545455
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	77127872	77127873	77127872	+	High_confidence	7	7	11	0.434928	2.921928	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.545455
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	66408538	66408570	66408538	+	High_confidence	3	3	14	0.553545	3.392747	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.785714
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	9189784	9189785	9189784	-	High_confidence	8	9	9	0.355850	2.750000	chr7	9189604	9190242	LTR|ERV1|LTR9	-	chr7	9082556	9189785	AC004852.2|ENST00000614289.1	-	9082556,9189559	9084548,9189785	0.555556
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	5890477	5890486	5890477	+	RAMPAGE_only	3	3	7	0.276772	2.584963	chr3	5890378	5890510	DNA|hAT-Charlie|MER117	+	chr3	5962841	6124120	AC087857.1|ENST00000425894.1	+	5962841,5963433,6123975	5963081,5963515,6124120	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	196404218	196404229	196404228	-	RAMPAGE_only	3	3	8	0.316311	2.750000	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225782	196465387	KCNT2|ENST00000498426.5	-	196225782,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196317173,196331155,196333846,196340340,196342078,196373139,196398562,196423049,196425851,196428104,196429576,196465292	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196317269,196331261,196334060,196340570,196342228,196373248,196398671,196423113,196425988,196428269,196429757,196465387	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	9140390	9140428	9140393	+	High_confidence	33	33	153	6.049453	5.935704	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.712418
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	141333508	141333513	141333512	+	RAMPAGE_only	5	5	9	0.355850	2.725481	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141636595	141733987	IL15|NM_172175.2	+	141636595,141656185,141688821,141719377,141720468,141721058,141721923,141727939,141729846,141732737	141636748,141656307,141689035,141719476,141720566,141721177,141722008,141727984,141729984,141733987	0.555556
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	147173173	147173250	147173173	+	High_confidence	18	21	69	2.728185	5.351066	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.782609
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	104763726	104763756	104763755	+	High_confidence	13	16	46	1.818790	4.224752	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	0.978261
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	11587468	11587475	11587468	-	High_confidence	10	10	18	0.711700	3.263933	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.944444
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	145735997	145736023	145736022	-	High_confidence	7	9	19	0.751239	3.005315	chr6	145735975	145736071	SINE|MIR|MIR3	+	chr6	145625303	145735855	EPM2A|NM_005670.3	-	145625303,145635244,145686121,145735197	145627693,145635486,145686296,145735855	0.947368
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	571725	571755	571754	-	High_confidence	27	34	68	2.688646	5.035274	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.941176
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	180870504	180870522	180870521	-	High_confidence	5	6	12	0.474467	2.913977	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180707588	180870178	LOC101928882|NR_109986.1	-	180707588,180711192,180711309,180725514,180733478,180734486,180737492,180747879,180748245,180751347,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180733682,180734606,180737814,180748043,180748319,180751410,180782124,180810470,180847624,180870178	0.583333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	94683469	94683508	94683483	+	High_confidence	20	20	41	1.621095	3.621621	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_001128925.1	+	94683493,94687769,94688124,94694916,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94720537,94724533,94733438,94736190	0.926829
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	68975842	68975855	68975842	-	High_confidence	19	21	56	2.214179	4.619338	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.607143
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	135965718	135965773	135965723	+	High_confidence	40	75	408	16.131875	6.560068	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.997549
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	79455405	79455419	79455406	-	High_confidence	3	5	12	0.474467	3.418296	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	112383908	112383910	112383909	-	RAMPAGE_only	12	16	21	0.830317	4.201841	chr8	112383757	112384155	LINE|RTE-X|L4_A_Mam	+	chr8	112222931	112690042	CSMD3|ENST00000339701.7	-	112222931,112228755,112231544,112234364,112237189,112241719,112244393,112247019,112254252,112255253,112263638,112265410,112281173,112287063,112289364,112291509,112292536,112295832,112301792,112304720,112306006,112310977,112313905,112314428,112318836,112319900,112335328,112336651,112337542,112341476,112346096,112351174,112352415,112380351,112383566,112390663,112406523,112472590,112492488,112503789,112506690,112517033,112550670,112552593,112556762,112573500,112587065,112636816,112638695,112645108,112650160,112656153,112666276,112682441,112685405,112689867	112224930,112228891,112231632,112234477,112237348,112241785,112244573,112247131,112254326,112255427,112263812,112265590,112281350,112287246,112289538,112291695,112292710,112296006,112301966,112304915,112306192,112311166,112314052,112314617,112318950,112319981,112335474,112336829,112337731,112341686,112346213,112351244,112352534,112380456,112383663,112390788,112406727,112472707,112492683,112503977,112506829,112517225,112550873,112552720,112556954,112573657,112587235,112637005,112638911,112645225,112650349,112656341,112666415,112682636,112685732,112690042	0.761905
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	184590779	184590809	184590808	+	RAMPAGE_only	3	3	10	0.395389	2.521928	chr1	184590844	184591183	DNA|TcMar-Tigger|MER2B	+	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	49086519	49086521	49086520	+	High_confidence	3	5	7	0.276772	2.584963	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	53974893	53974927	53974893	-	RAMPAGE_only	7	7	20	0.790778	3.681881	chr15	53974757	53975143	LTR|ERVL-MaLR|MLT1F1	-	chr15	53948145	53976908	AC084759.2|ENST00000557976.5	-	53948145,53955768,53968001,53972669,53974817,53976767	53948608,53955831,53968150,53972784,53974939,53976908	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr22	50785204	50785243	50785242	+	RAMPAGE_only	4	4	10	0.395389	2.947703	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	227142956	227142957	227142956	-	RAMPAGE_only	12	12	13	0.514006	3.251629	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317714	CDC42BPA|ENST00000334218.9	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227059372,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227112670,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227059411,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227112913,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317714	0.923077
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	4782342	4782359	4782358	+	High_confidence	4	4	8	0.316311	3.000000	chr3	4782402	4782508	DNA|hAT-Charlie|MER117	+	chr3	4782339	4788458	ITPR1|ENST00000481415.2	+	4782339,4783815,4787946	4782741,4783920,4788458	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	41497434	41497467	41497463	-	RAMPAGE_only	6	6	21	0.830317	3.536887	chr11	41497463	41497555	DNA|TcMar-Tigger|Tigger7	+	chr11	40648223	41459636	LRRC4C|ENST00000534577.1	-	40648223,40933634,41222796,41459430	40648278,40933723,41223008,41459636	0.666667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	70285805	70285812	70285805	+	RAMPAGE_only	2	2	6	0.237233	2.584963	chr7	70285761	70286289	LINE|L2|L2b	-	chr7	70245175	70294239	MSTRG.20800.13	+	70245175,70250002	70249817,70294239	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	8788252	8788253	8788252	+	High_confidence	9	9	9	0.355850	2.947703	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.888889
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	118477049	118477058	118477049	+	RAMPAGE_only	5	5	10	0.395389	2.947703	chr7	118476699	118477301	LTR|ERVL|LTR50	-	chr7	118239974	118496171	ANKRD7|ENST00000634332.1	+	118239974,118259836,118322670,118322858,118426976,118431923,118433517,118433883,118443399,118474938,118475916,118477069,118493672,118496039	118239998,118259889,118322711,118322996,118427074,118432019,118433593,118433979,118443535,118475029,118476024,118477139,118493788,118496171	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	26957017	26957044	26957017	+	High_confidence	7	7	20	0.790778	3.884184	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26956992	27023924	LINC00240|ENST00000606878.1	+	26956992,26968457,27023253	26957183,26968522,27023924	0.600000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	75460621	75460643	75460627	-	RAMPAGE_only	7	7	24	0.948934	3.675311	chr16	75460383	75460811	LINE|L2|L2a	+	chr16	75443243	75464416	TMEM170A|NM_001304997.1	-	75443243,75451668,75464231	75447688,75451839,75464416	0.833333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	68882874	68882909	68882874	-	High_confidence	8	8	25	0.988473	3.621176	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.880000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	69069433	69069464	69069463	-	RAMPAGE_only	54	54	109	4.309741	6.017077	chr17	69069462	69069607	LTR|ERVL|LTR33	-	chr17	68974487	69061064	ABCA9|ENST00000340001.8	-	68974487,68976134,68982561,68983708,68984055,68984884,68985052,68986163,68989026,68989812,68990836,68992174,68993015,68995894,69007758,69008061,69011975,69016252,69017655,69018412,69020387,69021741,69024213,69026376,69026975,69027329,69027639,69028534,69029168,69032107,69033725,69035245,69035659,69043488,69044496,69045171,69049282,69051030,69060865	68976013,68976190,68982641,68983849,68984175,68984979,68985128,68986324,68989118,68989930,68990957,68992266,68993084,68996014,69007872,69008235,69012083,69016390,69017789,69018579,69020586,69021861,69024353,69026467,69027114,69027449,69027815,69028645,69029227,69032276,69033873,69035431,69035801,69043715,69044600,69045336,69049490,69051139,69061064	0.504587
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	137309813	137309817	137309813	-	RAMPAGE_only	9	9	15	0.593084	3.378783	chr7	137309097	137310388	DNA|TcMar-Tigger|Tigger1	-	chr7	137227363	137343774	PTN|ENST00000393083.2	-	137227363,137236143,137251229,137253463,137254858,137343438	137228075,137236242,137251391,137253637,137254974,137343774	0.733333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	67183453	67183493	67183466	-	High_confidence	4	4	15	0.593084	3.378783	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.733333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	138347725	138347758	138347757	+	High_confidence	13	13	45	1.779251	4.550419	chr3	138347598	138347891	SINE|Alu|AluSx	-	chr3	138347696	138405533	MRAS|ENST00000289104.8	+	138347696,138372865,138397323,138398468,138400533,138402169	138348325,138373076,138397477,138398568,138400613,138405533	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	51027667	51027684	51027667	-	High_confidence	11	11	21	0.830317	3.203702	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	47998234	47998280	47998261	+	RAMPAGE_only	6	6	19	0.751239	3.826875	chr8	47995253	47998768	LTR|ERV1|HERVFH21-int	-	chr8	48008399	48064708	UBE2V2|ENST00000523111.6	+	48008399,48043032,48049852,48060681	48008470,48043181,48049978,48064708	0.947368
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	43167346	43167347	43167346	-	RAMPAGE_only	44	45	47	1.858329	4.217859	chr17	43167246	43167698	LTR|ERV1|LTR2	-	chr17	43148367	43170316	AC060780.1|ENST00000635600.1	-	43148367,43159422,43166979,43170125	43148783,43159727,43167849,43170316	0.936170
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	7640240	7640244	7640243	+	RAMPAGE_only	4	5	8	0.316311	2.807355	chr1	7640080	7640291	DNA|hAT-Charlie|MER20	+	chr1	6785323	7769706	CAMTA1|ENST00000303635.11	+	6785323,6820180,6825091,7091303,7249490,7467829,7640399,7661725,7663352,7670910,7677598,7732447,7736343,7736930,7737254,7737958,7744834,7745844,7747709,7751198,7752458,7755637,7766458	6785575,6820250,6825210,7091371,7249626,7467901,7640553,7661866,7665199,7671037,7677733,7732599,7736540,7737009,7737570,7738482,7745022,7746091,7747781,7751392,7752533,7755668,7769706	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	26956421	26956438	26956437	-	High_confidence	3	5	7	0.276772	2.521641	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	7147275	7147288	7147275	+	High_confidence	5	5	10	0.395389	2.947703	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.600000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	40453541	40453547	40453546	-	High_confidence	8	9	15	0.593084	3.664498	chr2	40453521	40453703	DNA|hAT-Charlie|MER5B	+	chr2	40115252	40453438	MSTRG.12611.9	-	40115252,40139400,40160764,40164853,40170280,40174824,40178386,40428472,40453160	40115629,40139676,40160864,40164984,40170349,40174842,40178493,40430304,40453438	0.866667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	70590319	70590329	70590328	+	RAMPAGE_only	6	6	13	0.514006	3.026987	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.769231
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr21	42524935	42524976	42524975	+	RAMPAGE_only	4	4	16	0.632623	3.773557	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42513913	42581440	SLC37A1|ENST00000352133.2	+	42513913,42518276,42525775,42534697,42535471,42539511,42542403,42543435,42547102,42554061,42558957,42562077,42563814,42564707,42565826,42566984,42568359,42574817,42579735,42580344	42514717,42518510,42525857,42534830,42535550,42539647,42542480,42543602,42547140,42554142,42559089,42562168,42563877,42564793,42565875,42567058,42568438,42574915,42579800,42581440	0.562500
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	185620093	185620126	185620093	-	RAMPAGE_only	2	2	14	0.553545	3.180833	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.785714
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	66729229	66729350	66729279	-	High_confidence	146	159	945	37.364268	5.646233	chr11	66729233	66729349	SINE|MIR|MIRb	-	chr11	66715353	66729226	SPTBN2|ENST00000527010.1	-	66715353,66715829,66721083,66728740	66715395,66715981,66721262,66729226	0.985185
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	100919985	100920021	100919985	-	RAMPAGE_only	7	7	32	1.265245	4.281728	chr8	100919701	100920019	LTR|ERV1|MER34B-int	-	chr8	100918575	100950571	YWHAZ|NM_001135702.1	-	100918575,100923954,100924134,100924915,100948595,100950405	100920752,100924050,100924298,100925039,100948900,100950571	0.937500
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	94849443	94849449	94849448	+	RAMPAGE_only	5	6	10	0.395389	3.121928	chr4	94848411	94849793	LINE|L2|L2	-	chr4	94757976	95158450	BMPR1B|NM_001203.2	+	94757976,94875830,94996039,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547	94758068,94875900,94996134,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95158450	0.600000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	47706420	47706438	47706420	-	RAMPAGE_only	2	3	9	0.355850	2.750000	chr3	47706169	47706371	SINE|Alu|AluSx	-	chr3	47678195	47701654	SMARCC1|ENST00000462198.5	-	47678195,47680436,47686048,47689386,47693240,47701277	47678311,47680508,47686170,47689424,47693300,47701654	0.777778
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	95852391	95852515	95852391	-	RAMPAGE_only	7	9	66	2.609568	4.494687	chr2	95852342	95852526	DNA|hAT-Charlie|MER58A	+	chr2	95836918	95855377	ANKRD36C|ENST00000612359.4	-	95836918,95851165,95851693,95852125,95853708,95855265	95837108,95851195,95851787,95852196,95853861,95855377	0.848485
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	7566491	7566531	7566514	-	High_confidence	7	10	36	1.423401	4.607436	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.722222
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	1744898	1744909	1744898	-	High_confidence	2	2	8	0.316311	2.500000	chr2	1744859	1744905	SINE|MIR|MIR	-	chr2	1680252	1744852	PXDN|ENST00000485177.1	-	1680252,1683655,1684079,1687631,1691927,1693062,1744803	1680362,1683727,1684151,1687703,1691999,1693134,1744852	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr22	50756789	50756862	50756826	+	High_confidence	4	4	28	1.107089	4.085055	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.571429
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	15518437	15518471	15518460	+	RAMPAGE_only	6	6	32	1.265245	4.128079	chr16	15518437	15518591	LTR|ERVL|LTR86C	-	chr16	15515342	15584182	C16orf45|ENST00000561692.5	+	15515342,15567982,15581216,15583155,15584006	15515428,15568056,15581331,15583238,15584182	0.843750
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	73999896	73999934	73999933	+	RAMPAGE_only	3	3	10	0.395389	3.169925	chrX	73999206	73999999	LINE|L1|L1M3de	+	chrX	73944341	74000491	JPX|ENST00000414209.5	+	73944341,73944583,73946998,73998767,73998953	73944465,73944662,73947374,73998844,74000491	0.700000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	52236182	52236183	52236182	-	RAMPAGE_only	13	13	13	0.514006	3.392747	chr13	52235788	52236194	LINE|L1|L1PA16	+	chr13	52167708	52291557	AL158066.1|ENST00000451298.1	-	52167708,52169986,52171157,52175638,52180581,52183975,52186682,52189638,52223238,52227004,52229325,52233063,52235219,52253744,52253936,52258528,52279840,52280651,52280861,52283237,52289821,52291506	52169304,52170099,52171248,52175776,52180654,52184114,52186823,52189914,52223331,52227096,52229431,52233144,52235281,52253833,52254018,52258590,52279905,52280715,52280961,52283357,52289983,52291557	0.692308
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	42878206	42878240	42878236	-	RAMPAGE_only	4	4	13	0.514006	2.584963	chr17	42878058	42878260	SINE|Alu|AluSx	+	chr17	42874669	42898704	LINC00671|ENST00000301683.7	-	42874669,42877974,42878526,42894565,42897686,42898632	42874863,42878073,42879818,42894634,42897918,42898704	0.846154
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	197596814	197596815	197596814	-	RAMPAGE_only	5	5	8	0.316311	2.521641	chr2	197596323	197596769	LINE|L1|L1ME4c	-	chr2	197571734	197618021	RFTN2|ENST00000494346.1	-	197571734,197595990,197615875,197617799	197572280,197596069,197615979,197618021	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	73837693	73837738	73837698	-	RAMPAGE_only	5	5	23	0.909395	3.606937	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.739130
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	2727102	2727272	2727243	+	High_confidence	17	17	98	3.874813	5.716378	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.744898
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	94088137	94088157	94088156	+	RAMPAGE_only	5	5	14	0.553545	3.546594	chr14	94088069	94088490	LTR|ERVL|LTR67B	+	chr14	94081395	94102709	IFI27L1|ENST00000557066.5	+	94081395,94094749,94096855,94100738,94102476	94081449,94094899,94096965,94100771,94102709	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	240022172	240022216	240022215	-	RAMPAGE_only	7	9	26	1.028012	2.619451	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.961538
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	53258340	53258362	53258340	-	RAMPAGE_only	3	3	11	0.434928	2.921928	chr1	53258163	53258293	LINE|L2|L2-3_Crp	-	chr1	53245748	53257323	LRP8|ENST00000529670.5	-	53245748,53246955,53250689,53255116,53257239	53245981,53247056,53250862,53255185,53257323	0.727273
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr22	18149844	18149869	18149868	+	High_confidence	7	7	12	0.474467	2.584963	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	48492749	48492791	48492783	-	High_confidence	12	14	36	1.423401	4.910992	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.694444
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	11737818	11737851	11737818	-	RAMPAGE_only	4	4	9	0.355850	3.169925	chr16	11737581	11737874	SINE|Alu|AluSc8	+	chr16	11692049	11733999	TXNDC11|ENST00000571882.1	-	11692049,11698124,11700451,11721313,11721576,11733981	11692082,11698325,11700564,11721435,11721670,11733999	0.555556
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	153872174	153872201	153872174	+	High_confidence	3	3	12	0.474467	3.095795	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	95061980	95061982	95061981	+	RAMPAGE_only	33	44	54	2.135101	4.839769	chr4	95061793	95062180	LTR|ERVL-MaLR|MSTA	+	chr4	95051678	95154817	BMPR1B|ENST00000509540.5	+	95051678,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547	95051772,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95154817	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	31119460	31119480	31119460	-	High_confidence	6	8	13	0.514006	2.918296	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.769231
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	48492537	48492556	48492537	-	RAMPAGE_only	2	2	9	0.355850	2.947703	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48488958	48533233	RCBTB2|ENST00000344532.7	-	48488958,48496190,48499620,48501741,48502723,48510628,48511769,48512015,48512728,48515204,48515585,48521897,48522307,48524658,48533027	48490251,48496321,48499760,48501868,48502914,48510771,48511877,48512174,48512895,48515355,48515741,48521962,48522403,48524757,48533233	0.888889
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr21	29193399	29193460	29193459	+	High_confidence	19	20	81	3.202652	4.008837	chr21	29193019	29193674	LTR|ERV1|MER50B	+	chr21	29193493	29288205	LINC00189|NR_027072.2	+	29193493,29287983	29194260,29288205	0.987654
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	31188904	31188928	31188904	+	RAMPAGE_only	2	2	8	0.316311	2.500000	chr17	31188574	31189019	LTR|ERVL|MLT2A1	+	chr17	31200535	31374433	NF1|ENST00000456735.6	+	31200535,31201036,31201410,31206239,31214450,31219004,31221849,31223443,31225094,31226434,31227217,31227522,31229024,31229834,31230259,31230841,31232072,31232699,31233001,31235610,31235917,31248983,31258343,31259031,31260368,31261710,31265228,31325819,31327498,31330295,31334837,31336332,31336634,31337367,31337818,31338024,31338703,31340504,31343008,31349119,31350182,31352256,31356459,31356959,31357268,31358479,31358968,31360486,31367224,31374012	31200595,31201159,31201485,31206371,31214585,31219118,31221929,31223567,31225250,31226684,31227291,31227606,31229465,31229974,31230382,31230925,31232189,31232881,31233213,31235772,31236021,31249119,31258502,31259129,31260515,31261857,31265339,31326252,31327839,31330498,31335031,31336473,31336914,31337582,31337880,31338139,31338805,31340645,31343135,31349251,31350318,31352414,31356582,31357090,31357369,31358622,31359015,31360703,31367278,31374433	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	53523862	53523902	53523862	-	High_confidence	2	2	10	0.395389	3.169925	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	26474345	26474348	26474345	+	RAMPAGE_only	8	8	16	0.632623	3.875000	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.562500
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	58312309	58312360	58312344	+	RAMPAGE_only	3	3	15	0.593084	3.240224	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.666667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	49646471	49646510	49646509	-	High_confidence	5	5	17	0.672161	3.175123	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.705882
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	98943562	98943578	98943575	+	High_confidence	37	44	81	3.202652	5.371439	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.987654
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	47067498	47067518	47067498	-	High_confidence	383	415	1420	56.145250	6.021350	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.914789
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	92536601	92536704	92536601	-	High_confidence	42	45	121	4.784208	5.757545	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.892562
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	37177260	37177261	37177260	-	High_confidence	8	8	8	0.316311	2.750000	chr3	37176997	37177246	LINE|L2|L2c	-	chr3	37075023	37176532	LRRFIP2|ENST00000416425.5	-	37075023,37083635,37091466,37094791,37096615,37129062,37148893,37174538,37176368	37075116,37083806,37091538,37094908,37096660,37129149,37149038,37174605,37176532	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	7754076	7754077	7754076	+	High_confidence	19	19	19	0.751239	3.260828	chr4	7753883	7754236	LTR|ERVL-MaLR|THE1A	+	chr4	7754089	7778928	AFAP1-AS1|NR_026892.1	+	7754089,7772203	7754159,7778928	0.947368
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	4355592	4355593	4355592	-	High_confidence	138	138	138	5.456369	4.722580	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.978261
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	51403421	51403448	51403432	-	RAMPAGE_only	7	7	20	0.790778	3.260828	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	129488735	129488857	129488856	+	High_confidence	18	18	99	3.914352	5.006353	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.929293
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	117379662	117379663	117379662	+	RAMPAGE_only	5	5	8	0.316311	2.807355	chr11	117379571	117379701	SINE|MIR|MIRb	-	chr11	117363954	117413266	CEP164|ENST00000533706.5	+	117363954,117371079,117373750,117375707,117380613,117381700,117382795,117387202,117390776,117390998,117392225,117392495,117393003,117394349,117394919,117395122,117395546,117396053,117396549,117397090,117407924,117408525,117408889,117409617,117410827,117411794,117412071	117364043,117371466,117373831,117375791,117380705,117381868,117382942,117387412,117390908,117391215,117392303,117392627,117393126,117394493,117395003,117395191,117395722,117396180,117396611,117397313,117408032,117408755,117409028,117409965,117410894,117411917,117413266	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	60250505	60250546	60250505	-	RAMPAGE_only	2	2	9	0.355850	2.641604	chr8	60250226	60250619	LINE|L2|L2a	+	chr8	60222648	60281324	MSTRG.21936.3	-	60222648,60224536,60226872,60232283,60280188	60222761,60224585,60226935,60279880,60281324	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	8658876	8658884	8658883	-	High_confidence	10	11	27	1.067551	4.356558	chr11	8658830	8658957	DNA|DNA|MER126	-	chr11	8612036	8658836	TRIM66|ENST00000299550.10	-	8612036,8618749,8619382,8620049,8620445,8621031,8621644,8622815,8624358,8624708,8638653,8640226,8643008,8645740,8646446,8647969,8648415,8649739,8651799,8658736	8618003,8618968,8619535,8620124,8620572,8621321,8621819,8622876,8624454,8625228,8638815,8641152,8643126,8645887,8646561,8648086,8648548,8649887,8651903,8658836	0.851852
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	212411871	212411936	212411874	-	RAMPAGE_only	3	3	18	0.711700	3.499228	chr2	212411857	212411989	LTR|ERV1|LTR78	-	chr2	212408265	212538529	MSTRG.13750.11	-	212408265,212426361	212426275,212538529	0.944444
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	215383333	215383430	215383357	-	High_confidence	12	12	90	3.558502	5.092950	chr2	215383001	215383307	SINE|Alu|AluSz	-	chr2	215379204	215383483	FN1|ENST00000490833.5	-	215379204,215380810,215382002,215382211,215383327	215379317,215381080,215382048,215382325,215383483	0.577778
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr20	46432995	46433070	46433069	-	RAMPAGE_only	14	20	71	2.807262	5.065025	chr20	46433014	46433360	LTR|ERVL|ERV3-16A3_I-int	-	chr20	46414227	46459276	ZNF663P|ENST00000400371.2	-	46414227,46455894,46457596,46459218	46414964,46457503,46457914,46459276	0.802817
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	196715591	196715604	196715591	+	RAMPAGE_only	3	3	11	0.434928	2.646439	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.818182
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	123279661	123279667	123279661	-	RAMPAGE_only	8	9	19	0.751239	4.058814	chr8	123279322	123279782	LTR|ERVL-MaLR|MLT1H	-	chr8	123248449	123275541	ZHX1|NR_037873.1	-	123248449,123253321,123267272,123275339	123250320,123256171,123267386,123275541	0.526316
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	28233998	28234048	28233998	-	RAMPAGE_only	2	3	11	0.434928	2.721928	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.909091
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	202565118	202565128	202565125	+	RAMPAGE_only	3	4	13	0.514006	2.918296	chr2	202565124	202565329	LINE|CR1|L3b	-	chr2	202377433	202567751	BMPR2|ENST00000374574.2	+	202377433,202464808,202467518,202513718,202514887,202518821,202520086,202530793,202532584,202542310,202552715,202559695	202377550,202464979,202467689,202513829,202514979,202519052,202520201,202530954,202532732,202542447,202552888,202567751	0.923077
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	196715644	196715657	196715644	+	RAMPAGE_only	2	2	8	0.316311	2.807355	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	78620056	78620058	78620056	+	High_confidence	51	87	87	3.439885	5.070095	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.862069
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	122164574	122164597	122164595	+	High_confidence	8	11	29	1.146628	4.378783	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122164614	122174568	MORN5|ENST00000418632.1	+	122164614,122166767,122169644,122174495	122164647,122166915,122169756,122174568	0.586207
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr20	18794054	18794086	18794085	+	High_confidence	34	34	125	4.942364	6.194868	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	143824540	143824567	143824566	-	RAMPAGE_only	5	5	12	0.474467	3.418296	chr3	143824344	143824714	LINE|L2|L2a	+	chr3	143265221	143848531	SLC9A9|ENST00000316549.10	-	143265221,143268874,143363483,143382059,143467036,143493652,143495334,143552361,143574087,143578584,143652254,143693191,143795000,143796825,143832018,143848147	143266929,143268980,143363563,143382114,143467190,143493764,143495448,143552450,143574193,143578723,143652360,143693307,143795077,143796903,143832221,143848531	0.666667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	78971818	78971826	78971818	+	High_confidence	3	3	9	0.355850	2.750000	chr4	78971775	78972175	LINE|L1|L1MA7	-	chr4	78971747	79308799	LINC01088|NR_038342.1	+	78971747,78972999,79086095,79195835,79306690,79308272	78971876,78973052,79086262,79195932,79306728,79308799	0.888889
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	138880196	138880197	138880196	-	RAMPAGE_only	8	8	8	0.316311	2.750000	chr5	138880161	138880436	SINE|Alu|AluJb	-	chr5	138872631	138875368	LRRTM2|ENST00000518785.1	-	138872631,138874907	138874128,138875368	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	47409168	47409225	47409224	-	High_confidence	7	8	30	1.186167	4.573557	chr11	47409105	47409195	SINE|MIR|MIR1_Amn	-	chr11	47383543	47409190	AC090559.1|ENST00000532340.1	-	47383543,47405509,47408951	47383832,47405547,47409190	0.566667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	113758081	113758155	113758141	-	RAMPAGE_only	14	15	98	3.874813	5.619304	chr1	113758040	113758255	SINE|Alu|AluSq2	+	chr1	113697201	113759155	PHTF1|ENST00000393357.6	-	113697201,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113759155	0.775510
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	2757786	2757814	2757786	+	High_confidence	4	4	19	0.751239	3.787144	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	7913244	7913249	7913248	-	RAMPAGE_only	5	5	11	0.434928	3.027169	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7847611	7853491	UTS2|NM_021995.2	-	7847611,7849639,7850811,7852900,7853306	7847882,7849683,7850922,7852923,7853491	0.636364
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	17617785	17617798	17617796	-	High_confidence	15	17	32	1.265245	4.093139	chr10	17617759	17617913	SINE|Alu|FRAM	-	chr10	17589031	17617377	HACD1|ENST00000361271.7	-	17589031,17594204,17599289,17603559,17603725,17603929,17617082	17590446,17594383,17599411,17603648,17603744,17604047,17617377	0.593750
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	26956465	26956472	26956471	-	High_confidence	3	3	8	0.316311	2.521641	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	102419899	102419938	102419937	-	High_confidence	4	4	9	0.355850	3.169925	chr10	102419931	102420131	SINE|MIR|MIRc	+	chr10	102402616	102419934	PSD|NM_001270965.1	-	102402616,102403841,102404582,102404897,102405182,102405345,102407222,102410857,102411057,102411706,102412146,102412380,102413768,102414862,102416016,102416384,102418700,102419873	102403430,102403985,102404727,102405055,102405253,102405536,102407266,102410947,102411116,102411819,102412227,102412575,102414197,102415229,102416119,102417121,102418759,102419934	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	72242772	72242792	72242791	-	RAMPAGE_only	11	11	18	0.711700	3.572431	chr15	72242722	72243260	LINE|L2|L2c	-	chr15	72241217	72245787	PARP6|ENST00000566991.5	-	72241217,72241900,72242156,72242619	72241557,72241985,72242220,72245787	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	124673287	124673297	124673287	-	High_confidence	3	3	6	0.237233	2.584963	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	80059915	80059933	80059918	+	High_confidence	86	94	191	7.551931	5.273124	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.989529
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	163427021	163427038	163427037	+	RAMPAGE_only	3	3	11	0.434928	3.121928	chr6	163425976	163427403	LINE|L1|L1MC5a	-	chr6	163423133	163563454	QKI|ENST00000537041.5	+	163423133,163455278,163478779,163534981,163561981,163563443	163423213,163455421,163478896,163535125,163562069,163563454	0.636364
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	26399412	26399448	26399442	-	High_confidence	14	17	63	2.490951	5.323238	chr7	26399411	26399720	DNA|hAT-Charlie|MER33	+	chr7	26372018	26399418	LOC105375304|NR_136272.1	-	26372018,26399340	26372568,26399418	0.603175
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	116085461	116085462	116085461	+	High_confidence	4	4	7	0.276772	2.521641	chr5	116085484	116085794	DNA|hAT-Charlie|MER113	+	chr5	116085461	116293290	COMMD10|NM_001308080.1	+	116085461,116087496,116091078,116092544,116134067,116291516,116292450	116085606,116087587,116091189,116092700,116134178,116291576,116293290	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	79086177	79086186	79086177	+	High_confidence	4	4	8	0.316311	2.750000	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	24318752	24318775	24318774	+	High_confidence	3	3	11	0.434928	3.277613	chr1	24318741	24318936	SINE|MIR|MIRc	+	chr1	24319321	24355318	GRHL3|ENST00000361548.8	+	24319321,24331425,24334644,24336481,24337077,24337635,24337991,24339667,24342114,24342693,24342891,24344896,24346552,24347467,24350057,24354373	24319568,24331612,24334706,24336827,24337151,24337789,24338103,24339762,24342273,24342772,24343025,24344931,24346641,24347553,24350122,24355318	0.727273
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	39026091	39026140	39026110	+	High_confidence	5	5	19	0.751239	3.308271	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.947368
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	46243208	46243268	46243267	-	RAMPAGE_only	5	5	15	0.593084	3.640224	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.866667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	212485173	212485304	212485275	-	RAMPAGE_only	5	5	48	1.897868	4.613521	chr2	212485211	212485446	LINE|L2|L2c	+	chr2	212408265	212538529	MSTRG.13750.11	-	212408265,212426361	212426275,212538529	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	83179178	83179179	83179178	+	RAMPAGE_only	12	12	12	0.474467	2.855389	chr15	83178896	83179386	LTR|ERVL|LTR53	+	chr15	83180801	83184796	AC103876.1|ENST00000561498.1	+	83180801,83184647	83181021,83184796	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	134613031	134613097	134613060	-	RAMPAGE_only	10	10	50	1.976945	3.396217	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606429	134614903	SAR1B|ENST00000508363.5	-	134606429,134608371,134609570,134612690	134607066,134608503,134609674,134614903	0.980000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	21679806	21679851	21679806	+	RAMPAGE_only	7	7	16	0.632623	3.327820	chr13	21679659	21679978	SINE|Alu|AluY	+	chr13	21681112	21701832	FGF9|ENST00000478546.1	+	21681112,21701189	21681253,21701832	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	116390262	116390305	116390289	+	RAMPAGE_only	3	3	12	0.474467	2.845351	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.916667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	45192665	45192666	45192665	-	RAMPAGE_only	6	6	9	0.355850	2.947703	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	114624940	114625007	114625006	-	High_confidence	21	23	104	4.112046	5.193979	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.721154
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	7823603	7823627	7823626	+	RAMPAGE_only	38	40	110	4.349280	4.383467	chr18	7823431	7823938	LTR|ERVL|MLT2A2	+	chr18	7814117	8069959	MSTRG.10767.5	+	7814117,7888105,7906504,7926567,7949180,7955120,8069685	7823852,7888377,7906583,7926683,7949355,7955414,8069959	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	138557286	138557287	138557286	-	High_confidence	10	10	10	0.395389	2.521928	chr5	138557194	138557264	SINE|Alu|AluSx3	-	chr5	138555826	138557891	HSPA9|ENST00000524109.1	-	138555826,138556451,138556773,138557868	138556114,138556592,138557496,138557891	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	99937889	99937909	99937889	+	RAMPAGE_only	2	2	9	0.355850	2.947703	chr10	99937898	99938057	SINE|MIR|MIRc	+	chr10	99927208	99958998	DNMBP-AS1|NR_024130.2	+	99927208,99928159,99955673,99956481,99956788	99927299,99928240,99955832,99956591,99958998	0.777778
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	2726956	2726963	2726956	+	High_confidence	90	125	234	9.252105	6.542295	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.636752
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	195356169	195356212	195356211	-	High_confidence	12	14	46	1.818790	3.551787	chr3	195355936	195357733	LINE|L1|L1M1	+	chr3	195333081	195356212	ACAP2|ENST00000423531.3	-	195333081,195336931,195342470,195345258,195356067	195333123,195336976,195342654,195345317,195356212	0.826087
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	44610854	44610874	44610854	-	RAMPAGE_only	3	4	11	0.434928	3.459432	chr12	44610329	44610807	LINE|L2|L2	-	chr12	44522776	44532621	NELL2|ENST00000550139.1	-	44522776,44532580	44523484,44532621	0.636364
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	73144744	73144817	73144770	-	RAMPAGE_only	4	5	16	0.632623	3.323231	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.937500
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr20	45833293	45833323	45833293	-	High_confidence	4	4	9	0.355850	2.641604	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	105145874	105145891	105145882	+	High_confidence	3	3	11	0.434928	2.646439	chr4	105145828	105145941	DNA|TcMar-Tigger|Tigger19b	+	chr4	105145874	105242771	TET2|ENST00000305737.6	+	105145874,105190359,105233896	105146086,105190505,105242771	0.909091
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	157122999	157123004	157122999	-	High_confidence	2	2	8	0.316311	2.521641	chr3	157122796	157123135	LTR|ERVL-MaLR|MLT1A1	-	chr3	157081666	157123002	LINC00880|NR_034007.1	-	157081666,157101934,157103357,157122875	157083275,157102092,157103479,157123002	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	246689699	246689700	246689699	+	High_confidence	4	4	6	0.237233	2.584963	chr1	246689571	246689829	LTR|ERVL|LTR41	+	chr1	246690046	246691821	AL591848.2|ENST00000442712.1	+	246690046,246691467	246690214,246691821	0.833333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	50271485	50271488	50271485	+	High_confidence	12	12	21	0.830317	3.039633	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	80148048	80148049	80148048	+	High_confidence	33	33	33	1.304784	4.498940	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.636364
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	34588450	34588453	34588452	-	High_confidence	17	25	27	1.067551	3.926572	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.777778
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	59892716	59892746	59892716	-	High_confidence	5	5	25	0.988473	4.262692	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.760000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	80374439	80374450	80374439	-	High_confidence	4	4	15	0.593084	3.640224	chr7	80374347	80374986	LINE|RTE-X|L4_B_Mam	+	chr7	80371516	80374439	LOC101927269|NR_110075.1	-	80371516,80372126,80373811,80374340	80371577,80372294,80373990,80374439	0.600000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	95433915	95433956	95433915	-	RAMPAGE_only	6	6	18	0.711700	3.308271	chr4	95433794	95434204	LINE|L2|L2c	+	chr4	95162503	95548972	MSTRG.17315.2	-	95162503,95170153,95182896,95185046,95202730,95206627,95218968,95219984,95222209,95242428,95244976,95250486,95278258,95301605,95335409,95358221,95448165	95169399,95170332,95183061,95185196,95202964,95216211,95219313,95220176,95222266,95242593,95245144,95250667,95278362,95301749,95335631,95448078,95548972	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr22	23705502	23705514	23705502	-	RAMPAGE_only	4	4	8	0.316311	2.750000	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	70257706	70257707	70257706	+	High_confidence	9	9	9	0.355850	2.725481	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	84910874	84910899	84910874	-	RAMPAGE_only	6	7	14	0.553545	3.521641	chr12	84910504	84910928	LTR|ERV1|LTR46	+	chr12	84891832	84912024	SLC6A15|ENST00000549540.1	-	84891832,84911937	84892308,84912024	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	75626287	75626305	75626304	-	High_confidence	5	5	13	0.514006	3.238901	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	137254876	137254941	137254940	-	RAMPAGE_only	553	609	1281	50.649342	6.162734	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.992194
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	1655369	1655410	1655409	-	RAMPAGE_only	5	5	14	0.553545	3.085055	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	0.928571
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	154928503	154928504	154928503	+	High_confidence	18	18	27	1.067551	4.180833	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.888889
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	2757865	2757894	2757865	+	High_confidence	3	3	17	0.672161	3.690117	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.823529
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	32446977	32446997	32446977	+	High_confidence	66	68	179	7.077465	5.846238	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.899441
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	7766333	7766339	7766333	+	RAMPAGE_only	22	24	33	1.304784	4.113609	chr18	7766244	7766859	LTR|ERVL|LTR41	-	chr18	7774139	8406858	PTPRM|ENST00000400060.8	+	7774139,7888105,7906504,7926567,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8143646,8244057,8247844,8248149,8252487,8253226,8296367,8314780,8319177,8343422,8370889,8376045,8376461,8378264,8379166,8380295,8384560,8387071,8394475,8406108	7774271,7888377,7906583,7926683,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8143779,8244209,8247919,8248176,8252499,8253414,8296455,8314857,8319214,8343520,8371006,8376200,8376597,8378414,8379340,8380427,8384686,8387235,8394611,8406858	0.848485
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	195356090	195356109	195356099	-	High_confidence	17	17	33	1.304784	4.171465	chr3	195355936	195357733	LINE|L1|L1M1	+	chr3	195333081	195356212	ACAP2|ENST00000423531.3	-	195333081,195336931,195342470,195345258,195356067	195333123,195336976,195342654,195345317,195356212	0.727273
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	73837439	73837503	73837439	-	RAMPAGE_only	11	11	38	1.502479	3.343003	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.973684
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr21	29077453	29077501	29077476	+	High_confidence	7	8	53	2.095562	4.614344	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077474	29091576	MAP3K7CL|ENST00000419845.5	+	29077474,29080551,29085812,29091500	29077713,29080708,29085917,29091576	0.773585
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	43133126	43133141	43133126	+	High_confidence	4	4	8	0.316311	3.000000	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133143	43148788	TMEM62|ENST00000569535.5	+	43133143,43135511,43146492,43148754	43133402,43135649,43146634,43148788	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	111940109	111940147	111940109	-	RAMPAGE_only	2	2	10	0.395389	2.947703	chr7	111940063	111940135	LINE|RTE-BovB|MamRTE1	-	chr7	111728273	112004131	DOCK4|ENST00000445943.5	-	111728273,111732225,111735053,111736916,111739133,111739395,111741093,111741539,111742012,111746333,111747266,111755514,111758623,111760180,111765117,111767031,111769528,111778275,111782863,111783856,111784096,111788661,111790456,111808820,111809300,111811873,111822361,111834587,111840762,111844762,111846998,111863371,111867983,111869573,111871989,111872268,111872466,111877029,111895611,111900373,111901676,111915778,111935539,111940109,111944810,111945716,111977131,111984305,111989014,111994134,111998447,112000493,112004047	111728720,111732287,111735167,111736989,111739243,111739477,111741214,111741661,111742132,111746417,111747443,111755601,111758790,111760322,111765222,111767118,111769677,111778369,111782924,111783952,111784123,111788747,111790605,111808879,111809401,111811949,111822456,111834686,111840870,111844897,111847126,111863564,111868154,111869655,111872090,111872352,111872564,111877186,111895718,111900536,111901801,111915904,111935628,111940242,111944871,111945798,111977283,111984390,111989163,111994231,111998503,112000534,112004131	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	88784864	88784869	88784864	+	RAMPAGE_only	7	7	14	0.553545	3.235926	chr2	88784858	88784980	DNA|hAT-Charlie|MER5A1	-	chr2	88782711	88805403	ANKRD36BP2|ENST00000575193.1	+	88782711,88782852,88784597,88784720,88786469,88786590,88788317,88788441,88792420,88797281,88801053,88802712,88804379,88804786,88805378	88782762,88782925,88784626,88784793,88786498,88786663,88788346,88788514,88792494,88797423,88801309,88802865,88804450,88804880,88805403	0.928571
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	117454949	117454966	117454949	+	High_confidence	8	10	29	1.146628	3.922829	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.827586
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	155612312	155612323	155612312	+	High_confidence	2	2	6	0.237233	2.584963	chrX	155612307	155612443	SINE|MIR|MIR3	-	chrX	155612564	155782459	SPRY3|NM_001304990.1	+	155612564,155767961,155773765	155612647,155768136,155782459	0.666667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	37903557	37903558	37903557	-	High_confidence	7	8	8	0.316311	2.807355	chr9	37903533	37903620	SINE|MIR|MIR3	+	chr9	37887603	37904110	SLC25A51|ENST00000377716.6	-	37887603,37899828,37903530	37888592,37899950,37904110	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	24077184	24077308	24077270	+	RAMPAGE_only	5	5	45	1.779251	3.707305	chrX	24077071	24077365	SINE|Alu|AluSx	-	chrX	24054947	24078810	EIF2S3|NM_001415.3	+	24054947,24055614,24057420,24057632,24060087,24062415,24064200,24065997,24067963,24071557,24073090,24076721	24055037,24055678,24057548,24057754,24060182,24062574,24064335,24066092,24068108,24071727,24073263,24078810	0.977778
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	94691046	94691072	94691071	+	High_confidence	49	49	123	4.863286	5.927799	chr5	94691104	94691211	LINE|Penelope|Penelope1_Vert	+	chr5	94691194	94697621	MSTRG.18368.9	+	94691194,94692073,94694830	94691656,94692409,94697621	0.975610
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	91462186	91462236	91462215	-	High_confidence	2	2	10	0.395389	2.921928	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	67825485	67825524	67825515	+	High_confidence	7	7	38	1.502479	4.418723	chr15	67825556	67825685	SINE|MIR|MIR3	+	chr15	67825515	67834555	SKOR1|ENST00000554054.5	+	67825515,67825935,67829178,67830190,67830817,67832273,67832606,67833191,67833741	67825625,67828144,67829269,67830298,67830889,67832348,67832681,67833257,67834555	0.710526
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	5680226	5680249	5680240	-	High_confidence	19	19	60	2.372334	4.569046	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.916667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	65300634	65300635	65300634	-	High_confidence	13	13	13	0.514006	3.238901	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65266576	65300618	PARP16|ENST00000558873.1	-	65266576,65270934,65282546,65300196	65266768,65271072,65282632,65300618	0.846154
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	19349989	19350000	19349999	+	RAMPAGE_only	3	3	10	0.395389	2.721928	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19355317	19359025	PDHA1|ENST00000481733.1	+	19355317,19355685,19357651,19358915	19355504,19355757,19357719,19359025	0.700000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	82139698	82139709	82139708	-	High_confidence	3	3	8	0.316311	2.500000	chr16	82139255	82145258	LINE|L1|L1PA2	+	chr16	82044370	82139631	AC092142.1|ENST00000567021.1	-	82044370,82063092,82070802,82139588	82044608,82063253,82071189,82139631	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	65570509	65570529	65570519	+	High_confidence	23	29	112	4.428358	5.645288	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570535	65585775	LINC01515|ENST00000608678.5	+	65570535,65571424,65572934,65581611,65585484	65570759,65571579,65573056,65581673,65585775	0.580357
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	120793967	120793968	120793967	+	RAMPAGE_only	10	10	11	0.434928	2.646439	chr2	120793847	120793996	SINE|MIR|MIRc	+	chr2	120792408	120992653	GLI2|ENST00000452319.5	+	120792408,120797290,120927360,120951242,120955244,120968713,120970392,120971940,120974923,120978433,120982715,120984470,120986277,120988207	120792438,120797468,120927466,120951445,120955430,120968915,120970606,120972063,120975109,120978583,120982880,120984743,120986614,120992653	0.909091
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr20	50131135	50131140	50131139	-	High_confidence	5	5	9	0.355850	2.725481	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	43013392	43013393	43013392	-	High_confidence	15	15	16	0.632623	3.640224	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.937500
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	9986881	9986905	9986898	+	High_confidence	20	20	46	1.818790	5.012480	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.586957
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	224210478	224210510	224210502	-	High_confidence	3	3	10	0.395389	2.725481	chr1	224210478	224210598	LINE|L2|L2a	+	chr1	224208746	224210412	AC092809.2|ENST00000453760.5	-	224208746,224210240	224209011,224210412	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	100663202	100663222	100663221	-	High_confidence	2	3	8	0.316311	2.807355	chr8	100662939	100663274	LINE|L1|L1PA17	+	chr8	100617643	100663219	SNX31|ENST00000520661.5	-	100617643,100630326,100635896,100657723,100663141	100617730,100630391,100636011,100657867,100663219	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	212426713	212426715	212426714	-	RAMPAGE_only	4	5	8	0.316311	2.521641	chr2	212426619	212426859	SINE|tRNA-RTE|MamSINE1	-	chr2	212408265	212538529	MSTRG.13750.11	-	212408265,212426361	212426275,212538529	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	34239375	34239376	34239375	-	RAMPAGE_only	7	7	7	0.276772	2.521641	chr5	34237778	34241635	LINE|L1|L1PA16	+	chr5	34152824	34244698	MSTRG.17954.1	-	34152824,34175821,34179012,34182679,34218294,34244615	34169153,34175957,34179097,34182867,34218450,34244698	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	79631242	79631329	79631302	+	High_confidence	115	115	733	28.982020	6.490162	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.929059
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	101217578	101217599	101217598	-	High_confidence	5	5	15	0.593084	3.240224	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	113759894	113759900	113759898	-	High_confidence	8	16	30	1.186167	4.306257	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759540	PHTF1|NM_001323044.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113749505,113757698,113758658	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113749589,113757755,113759540	0.566667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	78055007	78055034	78055033	+	High_confidence	6	6	16	0.632623	3.452820	chr13	78055000	78055239	LTR|ERV1|LTR12C	-	chr13	78054996	78605557	RNF219-AS1|ENST00000606376.5	+	78054996,78274252,78363571,78605300	78055064,78274337,78363731,78605557	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	60533916	60533920	60533919	+	RAMPAGE_only	23	30	38	1.502479	4.315623	chr5	60533762	60534097	LTR|ERVL-MaLR|MSTD	+	chr5	60546218	60546349	RF02161|ENST00000619680.1	+	60546218	60546349	0.684211
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr20	45911662	45911684	45911662	-	High_confidence	5	5	19	0.751239	3.419382	chr20	45911555	45911651	SINE|MIR|MIRc	-	chr20	45898762	45912047	PLTP|ENST00000477313.5	-	45898762,45899461,45899621,45899835,45902266,45902439,45904799,45904941,45906267,45907691,45907840,45909515,45909941,45911151,45911352	45899063,45899538,45899685,45899878,45902334,45902604,45904859,45905118,45906359,45907755,45907904,45909671,45910070,45911251,45912047	0.947368
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	113940712	113940740	113940712	-	RAMPAGE_only	2	2	8	0.316311	2.521641	chr12	113940445	113940822	LTR|ERVL|LTR16C	+	chr12	113914968	113927431	RBM19|ENST00000552386.1	-	113914968,113918391,113920610,113924696,113927053	113915085,113918447,113920690,113924757,113927431	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	6248470	6248471	6248470	+	RAMPAGE_only	199	200	200	7.907782	6.043171	chr9	6248331	6248575	LTR|ERVL-MaLR|MSTD	+	chr9	6241694	6257982	IL33|ENST00000456383.3	+	6241694,6250473,6251139,6253551,6254461,6255967	6241785,6250599,6251265,6253602,6254553,6257982	0.835000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	4187108	4187109	4187108	-	High_confidence	13	13	16	0.632623	2.866248	chr17	4187012	4187196	LINE|L1|L1PB2	-	chr17	4183525	4187109	ANKFY1|ENST00000574736.1	-	4183525,4183811,4184817,4186893	4183551,4183910,4185046,4187109	0.812500
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	147382883	147382900	147382883	+	High_confidence	124	131	486	19.215909	5.917680	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.736626
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	102822460	102822463	102822460	-	RAMPAGE_only	2	2	7	0.276772	2.521641	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	21200777	21200826	21200825	+	High_confidence	8	8	20	0.790778	4.221928	chr6	21200835	21201081	LINE|L1|L1MC3	+	chr6	21200811	21231441	CDKAL1|ENST00000476517.1	+	21200811,21201109,21230847	21200892,21201274,21231441	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	113	113	113	4.467897	4.015691	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	52570267	52570324	52570323	+	RAMPAGE_only	27	35	106	4.191124	4.240964	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.839623
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	136530776	136530802	136530776	+	High_confidence	2	2	8	0.316311	3.000000	chr8	136530234	136530974	LTR|ERV1|LTR12C	-	chr8	136530770	137092183	LINC02055|ENST00000649576.1	+	136530770,136536977,136789834,136797273,136896984,136961739,137074249,137090409,137091340	136531006,136537059,136789889,136797370,136897078,136961851,137074367,137090503,137092183	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	132285409	132285410	132285409	-	High_confidence	5	6	8	0.316311	2.521641	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	11192949	11192978	11192977	+	High_confidence	8	8	18	0.711700	3.690117	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.611111
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	4342714	4342715	4342714	-	RAMPAGE_only	5	5	8	0.316311	2.750000	chr17	4342597	4343190	LINE|L2|L2a	+	chr17	4296732	4345780	UBE2G1|ENST00000574059.1	-	4296732,4307020,4331773,4335208,4345627	4296814,4307123,4331888,4335324,4345780	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	74000281	74000299	74000298	+	RAMPAGE_only	4	5	8	0.316311	3.000000	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	55140652	55140655	55140654	-	High_confidence	6	11	11	0.434928	2.845351	chr19	55140496	55140779	SINE|Alu|AluSx4	+	chr19	55132827	55140922	TNNT1|ENST00000589745.5	-	55132827,55133886,55134065,55137102,55137960,55140882	55132960,55133927,55134156,55137212,55138074,55140922	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	74148401	74148449	74148407	+	High_confidence	8	9	35	1.383862	4.364858	chr2	74148357	74148636	LINE|L2|L2	-	chr2	74148044	74149988	BOLA3-AS1|ENST00000533563.1	+	74148044,74148349,74148697	74148223,74148478,74149988	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	100829523	100829605	100829604	+	High_confidence	7	7	49	1.937407	5.084963	chr14	100829596	100829639	LINE|L2|L2b	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.734694
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	2867835	2867836	2867835	+	High_confidence	7	7	11	0.434928	3.095795	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	10449243	10449277	10449243	+	RAMPAGE_only	3	3	14	0.553545	3.521641	chr8	10448179	10449541	LINE|L1|L1MEg	+	chr8	10433671	10481974	MSTRG.21601.1	+	10433671,10470815,10477122,10480138,10481181	10454680,10474631,10477898,10480192,10481974	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	201115977	201115998	201115977	+	High_confidence	5	5	19	0.751239	3.419382	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.947368
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	10363964	10363965	10363964	+	High_confidence	7	9	11	0.434928	2.921928	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.545455
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	56120576	56120640	56120638	+	RAMPAGE_only	38	59	155	6.128531	6.299041	chr14	56120608	56120865	LINE|L2|L2a	-	chr14	56119108	56290293	PELI2|ENST00000561019.1	+	56119108,56178334,56279675,56288436,56290267	56119210,56178464,56279777,56288634,56290293	0.529032
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	16712869	16712959	16712889	-	High_confidence	28	31	184	7.275159	6.280899	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.923913
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	643635	643648	643635	-	High_confidence	4	4	12	0.474467	2.625815	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	67166530	67166531	67166530	+	High_confidence	5	5	8	0.316311	2.521641	chr15	67166449	67166543	LINE|L2|L2b	-	chr15	67166530	67184778	SMAD3|ENST00000558827.1	+	67166530,67166778,67170553,67181240,67184726	67166691,67166853,67170604,67181453,67184778	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	3062917	3062925	3062922	-	High_confidence	58	63	139	5.495908	5.312592	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.992806
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	65024463	65024473	65024463	-	High_confidence	2	3	6	0.237233	2.584963	chr4	65024156	65024597	LTR|ERVL-MaLR|MSTB1	-	chr4	64914280	65024485	LINC02232|ENST00000509932.2	-	64914280,64926591,64937606,64939272,64939955,64977488,65004402,65008781,65024236	64917643,64926661,64937839,64939365,64940036,64977629,65004501,65008912,65024485	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	170089470	170089495	170089485	-	High_confidence	2	3	13	0.514006	3.418296	chr4	170089443	170089514	LINE|L2|L2b	+	chr4	170070618	170089394	AADAT|ENST00000510340.5	-	170070618,170073135,170078508,170087115,170088395,170089260	170070652,170073345,170078583,170087248,170088564,170089394	0.923077
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	95541283	95541318	95541317	-	RAMPAGE_only	3	4	12	0.474467	3.277613	chr4	95541124	95541365	DNA|TcMar-Tigger|Tigger7	+	chr4	95162503	95548972	MSTRG.17315.2	-	95162503,95170153,95182896,95185046,95202730,95206627,95218968,95219984,95222209,95242428,95244976,95250486,95278258,95301605,95335409,95358221,95448165	95169399,95170332,95183061,95185196,95202964,95216211,95219313,95220176,95222266,95242593,95245144,95250667,95278362,95301749,95335631,95448078,95548972	0.916667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	16186271	16186277	16186271	-	High_confidence	3	4	7	0.276772	2.807355	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.857143
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	149217931	149217932	149217931	+	High_confidence	40	46	58	2.293257	5.534621	chr6	149217688	149218082	LTR|ERVL-MaLR|MLT1J	+	chr6	149217935	149245554	AL031056.1|ENST00000635954.1	+	149217935,149218622,149229931,149243728	149218084,149218776,149229995,149245554	0.672414
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	20658568	20658608	20658607	+	High_confidence	6	8	40	1.581556	4.289865	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.700000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	168093050	168093056	168093055	-	High_confidence	14	14	23	0.909395	3.697846	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.782609
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	200888569	200888629	200888628	-	High_confidence	6	6	30	1.186167	3.879894	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.800000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	85378112	85378113	85378112	-	High_confidence	203	211	211	8.342710	5.131574	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.957346
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	111487567	111487611	111487567	+	RAMPAGE_only	2	2	11	0.434928	3.459432	chr5	111487494	111487703	DNA|hAT-Charlie|Charlie5	-	chr5	111224541	111494886	CAMK4|NM_001323377.1	+	111224541,111344023,111374849,111394709,111446685,111449128,111473310,111478380,111482784,111484025	111224644,111344102,111374912,111394782,111446776,111449203,111473386,111478507,111482937,111494886	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	194476134	194476135	194476134	-	RAMPAGE_only	15	15	17	0.672161	3.625000	chr3	194476050	194476123	DNA|TcMar-Tigger|Tigger16a	-	chr3	194402673	194468239	ATP13A3|NM_024524.3	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194467883	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194468239	0.705882
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	44828864	44828903	44828864	-	RAMPAGE_only	2	2	13	0.514006	3.392747	chr7	44828696	44829092	LTR|ERVL-MaLR|MLT1D	-	chr7	44826790	44848077	H2AFV|ENST00000222690.10	-	44826790,44835528,44840898,44843276,44847968	44830163,44835658,44841012,44843354,44848077	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	50899059	50899164	50899163	-	RAMPAGE_only	5	5	33	1.304784	3.727217	chr2	50899087	50899251	DNA|TcMar-Tigger|MER127	+	chr2	50745468	51027703	MSTRG.12708.65	-	50745468,50757987,50795615,50868175,50925937,51027501	50757764,50795553,50868141,50922687,50925955,51027703	0.969697
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	88611735	88611750	88611735	-	High_confidence	6	6	10	0.395389	2.725481	chr5	88611584	88611790	LINE|L1|L1MDa	+	chr5	88540510	88611776	LINC00461|ENST00000506664.5	-	88540510,88542034,88611663	88541123,88542070,88611776	0.800000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	6866488	6866553	6866552	-	High_confidence	10	10	29	1.146628	4.088221	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.758621
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	70180434	70180445	70180443	+	High_confidence	2	3	8	0.316311	2.521641	chr12	70180098	70180628	LTR|ERVL|MLT2B2	+	chr12	70180337	70202004	AC084032.1|ENST00000552324.1	+	70180337,70199732,70201714	70180538,70199819,70202004	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	24216731	24216995	24216798	+	RAMPAGE_only	8	8	174	6.879770	6.337703	chr16	24216784	24216906	SINE|MIR|MIR3	-	chr16	23836023	24220611	PRKCB|ENST00000303531.11	+	23836023,23837374,23988507,24032135,24035418,24092790,24094162,24112972,24123834,24154683,24172269,24174517,24180789,24185110,24185459,24191089,24214657	23836348,23837406,23988590,24032247,24035547,24092947,24094297,24113069,24123981,24154857,24172361,24174580,24180928,24185191,24185567,24191230,24220611	0.988506
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	193656743	193656758	193656743	+	RAMPAGE_only	1	2	7	0.276772	2.584963	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193648765	193659514	OPA1|ENST00000482865.1	+	193648765,193654861,193657079,193658886,193659481	193648871,193655027,193657232,193658995,193659514	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr20	33102062	33102075	33102062	+	RAMPAGE_only	2	2	6	0.237233	2.584963	chr20	33102048	33102157	LINE|L2|L2b	-	chr20	33104703	33111751	BPIFB4|ENST00000494121.1	+	33104703,33107743,33111413	33104873,33107820,33111751	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	149217971	149217987	149217971	+	High_confidence	3	3	7	0.276772	2.521641	chr6	149217688	149218082	LTR|ERVL-MaLR|MLT1J	+	chr6	149217935	149245554	AL031056.1|ENST00000635954.1	+	149217935,149218622,149229931,149243728	149218084,149218776,149229995,149245554	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	92813188	92813373	92813205	+	RAMPAGE_only	24	24	107	4.230663	4.397515	chr4	92813182	92813504	LTR|ERVL-MaLR|MLT1A0	-	chr4	92303621	93774553	MSTRG.17302.1	+	92303621,92590130,92666673,92670425,92749473,92804035,93084994,93110747,93207403,93216737,93224613,93238370,93395606,93422770,93455661,93490638,93515215,93626268,93769209,93772075	92304744,92660629,92666740,92695125,92803942,92863585,93085279,93110953,93207457,93216911,93224775,93238490,93395708,93422968,93455974,93490777,93515411,93626435,93769450,93774553	0.990654
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	95042531	95042539	95042538	-	RAMPAGE_only	6	6	14	0.553545	3.546594	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr22	50756938	50756950	50756939	+	High_confidence	4	6	13	0.514006	3.418296	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.846154
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	123179155	123179203	123179187	-	RAMPAGE_only	4	5	22	0.869856	4.084184	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.863636
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	173369515	173369534	173369533	-	High_confidence	4	4	23	0.909395	4.055958	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.608696
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	217534	217535	217534	+	RAMPAGE_only	7	8	11	0.434928	3.459432	chr3	217318	217820	LINE|L2|L2a	-	chr3	198006	341946	CHL1|ENST00000435603.5	+	198006,319682,325958,328166,340793,341911	198092,319867,326064,328354,340916,341946	0.636364
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	84279967	84279968	84279967	+	High_confidence	7	7	7	0.276772	2.521641	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279990	84288995	LINC00858|ENST00000437892.1	+	84279990,84288223,84288593	84280065,84288420,84288995	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	137345811	137345839	137345811	-	High_confidence	10	10	47	1.858329	4.658303	chr7	137345640	137346278	LTR|ERV1|MER41B	-	chr7	137227340	137346526	MSTRG.21361.1	-	137227340,137251229,137253463,137254858,137343438,137345065,137345646	137228075,137251391,137253637,137254974,137343699,137345130,137346526	0.787234
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	92646313	92646314	92646313	+	RAMPAGE_only	4	5	7	0.276772	2.521641	chr4	92645520	92646642	LINE|L1|L1ME3	-	chr4	92600138	92701936	MSTRG.17302.5	+	92600138,92604523,92653062	92604498,92652649,92701936	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	62897589	62897611	62897589	-	High_confidence	2	2	9	0.355850	3.000000	chr9	62897543	62897631	SINE|MIR|MIRb	-	chr9	62857832	62897707	AL512625.3|ENST00000591993.5	-	62857832,62859071,62866966,62867696,62869189,62897528	62858183,62859193,62867110,62867876,62869304,62897707	0.666667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	26854030	26854055	26854042	-	RAMPAGE_only	3	3	13	0.514006	3.418296	chr18	26854018	26854100	LINE|L2|L2b	-	chr18	26852037	26862910	AQP4|NM_004028.4	-	26852037,26860771,26861130,26862181	26856489,26860852,26861295,26862910	0.923077
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	99471746	99471779	99471772	-	RAMPAGE_only	6	6	17	0.672161	3.337175	chr7	99471609	99471877	SINE|Alu|AluSx1	+	chr7	99458194	99466331	ATP5MF|ENST00000292475.7	-	99458194,99459146,99460085,99466110	99458355,99459263,99460193,99466331	0.941176
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	23951343	23951366	23951343	+	High_confidence	2	2	8	0.316311	2.521641	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	65438567	65438782	65438659	+	RAMPAGE_only	9	14	126	4.981902	4.849988	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.992063
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	111097307	111097338	111097337	-	High_confidence	5	10	32	1.265245	3.890320	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	122064375	122064376	122064375	+	High_confidence	6	6	8	0.316311	2.500000	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122064356	122065822	AC156455.1|ENST00000423999.2	+	122064356,122065255	122064682,122065822	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	176003061	176003094	176003061	-	High_confidence	15	15	39	1.542017	4.292350	chr4	176003011	176003179	SINE|MIR|MIR3	+	chr4	175632936	176002691	GPM6A|NM_005277.4	-	175632936,175640128,175640752,175651833,175673679,175701574,175812190,176002308	175635057,175640194,175640829,175651987,175673836,175701767,175812249,176002691	0.948718
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	12419888	12419904	12419903	+	High_confidence	7	8	20	0.790778	4.221928	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12419932	12432238	PRELID3A|ENST00000592149.5	+	12419932,12421539,12427040,12427220,12429349,12431149	12420493,12421629,12427111,12427323,12429436,12432238	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	147937519	147937530	147937528	+	RAMPAGE_only	3	6	11	0.434928	2.921928	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.545455
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	222737198	222737290	222737289	+	High_confidence	46	48	144	5.693603	6.110873	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.618056
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	108841936	108841937	108841936	+	RAMPAGE_only	6	7	8	0.316311	2.750000	chr6	108841964	108842055	LTR|ERVL|LTR16D2	+	chr6	108848415	108974472	ARMC2|NM_032131.5	+	108848415,108854224,108858198,108868823,108876142,108894466,108899693,108904229,108910898,108912334,108928087,108936899,108953032,108961571,108962013,108964179,108964979,108973356	108848546,108854485,108858271,108868995,108876350,108894543,108899792,108904405,108911001,108912558,108928233,108936999,108953351,108961694,108962127,108964312,108965140,108974472	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	79631425	79631442	79631434	+	High_confidence	6	6	20	0.790778	3.616349	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.950000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	159428345	159428388	159428356	-	RAMPAGE_only	17	20	57	2.253718	5.387538	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159386373	159419867	MSTRG.13337.11	-	159386373,159389344,159395768,159400598,159404848,159405021,159412334,159419779	159386607,159389485,159398894,159400664,159404910,159405114,159412545,159419867	0.912281
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	2990748	2990755	2990748	-	RAMPAGE_only	12	13	25	0.988473	3.448884	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.880000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	102389527	102389539	102389527	-	RAMPAGE_only	3	3	8	0.316311	2.750000	chr13	102389487	102389966	LTR|ERVL|LTR40a	+	chr13	101720854	102401774	FGF14|NM_175929.2	-	101720854,101726611,101868724,101875185,102401470	101722967,101726810,101868828,101875296,102401774	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	52570180	52570186	52570180	+	RAMPAGE_only	15	15	23	0.909395	3.495237	chr13	52569964	52570306	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.565217
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	55618850	55618904	55618850	-	High_confidence	20	21	104	4.112046	5.499215	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.971154
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	212440346	212440637	212440359	-	RAMPAGE_only	8	8	169	6.682076	4.837659	chr2	212440122	212440548	LTR|ERVL|MLT2A1	+	chr2	212408265	212538529	MSTRG.13750.11	-	212408265,212426361	212426275,212538529	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	31053446	31053449	31053448	+	High_confidence	7	11	12	0.474467	2.845351	chr6	31053266	31053607	LTR|ERVL-MaLR|THE1A	+	chr6	31053449	31059890	HCG22|NR_003948.2	+	31053449,31054099,31055709,31059407	31053531,31054516,31056910,31059890	0.916667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	47427359	47427386	47427385	-	RAMPAGE_only	4	4	10	0.395389	2.646439	chr19	47427348	47427570	LTR|ERVL|LTR33	+	chr19	47403117	47419528	MEIS3|NM_001009813.2	-	47403117,47406459,47406887,47407078,47407351,47409098,47409435,47414716,47415050,47416651,47416803,47417177,47419069	47403553,47406526,47406971,47407137,47407428,47409247,47409547,47414815,47415101,47416702,47416963,47417350,47419528	0.800000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	40763340	40763354	40763340	+	High_confidence	4	4	8	0.316311	2.521641	chr19	40763301	40763519	LINE|L2|L2a	-	chr19	40763540	40765208	SNRPA|ENST00000596860.1	+	40763540,40765007	40763675,40765208	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	81192593	81192645	81192622	-	RAMPAGE_only	3	3	10	0.395389	2.947703	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	158017462	158017465	158017462	+	High_confidence	14	14	28	1.107089	4.026987	chr6	158017402	158017714	SINE|Alu|AluSp	-	chr6	158017464	158033532	SYNJ2|ENST00000449320.2	+	158017464,158028755,158033454	158017795,158029026,158033532	0.607143
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	236825	236842	236825	-	High_confidence	2	2	8	0.316311	2.750000	chr11	236640	236796	SINE|MIR|MIRb	-	chr11	216610	236834	SIRT3|ENST00000529382.5	-	216610,218831,224077,230451,232982,233342,236615	216718,219041,224239,230552,233215,233534,236834	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	98733165	98733222	98733221	+	High_confidence	4	4	20	0.790778	3.932138	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.550000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	154287456	154287470	154287456	+	High_confidence	3	4	8	0.316311	2.500000	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	52548955	52548991	52548990	-	RAMPAGE_only	3	3	11	0.434928	2.921928	chr15	52548772	52548988	DNA|TcMar-Tigger|MamRep434	-	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	0.909091
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	50756879	50756943	50756879	-	RAMPAGE_only	3	3	18	0.711700	3.969816	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.833333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	105956715	105956716	105956715	+	High_confidence	5	5	7	0.276772	2.521641	chr1	105956478	105956938	LTR|ERVL|MER70A	+	chr1	105956715	105967623	AL355306.2|ENST00000634776.1	+	105956715,105961469,105965679	105956847,105961523,105967623	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr21	23384863	23384866	23384865	-	High_confidence	9	12	15	0.593084	3.664498	chr21	23384605	23385150	LTR|ERVL|MLT2B3	-	chr21	23361103	23384861	D21S2088E|ENST00000262354.4	-	23361103,23364037,23372326,23372947,23384687	23362239,23364193,23372448,23373084,23384861	0.600000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	6918647	6918680	6918679	-	High_confidence	14	14	47	1.858329	4.952591	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.744681
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	72833814	72833832	72833831	+	RAMPAGE_only	4	4	10	0.395389	2.521928	chr15	72833851	72833981	LTR|ERVL-MaLR|MLT1L	+	chr15	72858353	72887128	AC103874.1|ENST00000649889.1	+	72858353,72886575	72858538,72887128	0.700000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	3536839	3536873	3536839	-	High_confidence	5	5	14	0.553545	3.546594	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.857143
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	114759261	114759277	114759276	-	High_confidence	12	13	20	0.790778	3.471354	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.600000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	31587007	31587014	31587009	+	High_confidence	18	27	40	1.581556	4.281687	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	3063029	3063065	3063064	-	High_confidence	4	4	13	0.514006	3.251629	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3063107	AES|ENST00000221561.12	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3063107	0.846154
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	166850112	166850135	166850112	+	RAMPAGE_only	4	4	13	0.514006	3.392747	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	116496252	116496308	116496307	-	High_confidence	5	6	25	0.988473	3.319774	chr5	116496283	116496331	LINE|L2|L2	+	chr5	116486748	116495445	SEMA6A|ENST00000502996.5	-	116486748,116488107,116488887,116491739,116492326,116495412	116486966,116488196,116489007,116491830,116492485,116495445	0.680000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	143879984	143880004	143879984	-	RAMPAGE_only	7	7	18	0.711700	3.852169	chr1	143879646	143880169	LTR|ERVL-MaLR|MLT1E1A	-	chr1	143877730	143885076	AC239798.2|ENST00000415338.1	-	143877730,143884015	143880209,143885076	0.944444
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	163423219	163423264	163423229	+	High_confidence	4	6	24	0.948934	3.969002	chr6	163423016	163423301	SINE|Alu|AluSx4	+	chr6	163423133	163563454	QKI|ENST00000537041.5	+	163423133,163455278,163478779,163534981,163561981,163563443	163423213,163455421,163478896,163535125,163562069,163563454	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	51354782	51354850	51354809	-	High_confidence	14	15	106	4.191124	5.121348	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	67206044	67206067	67206044	-	RAMPAGE_only	2	4	9	0.355850	2.725481	chr13	67205987	67206134	SINE|Alu|AluJo	-	chr13	67201014	67230445	PCDH9|ENST00000377861.4	-	67201014,67229779	67228575,67230445	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	175874841	175874860	175874841	+	RAMPAGE_only	4	4	16	0.632623	3.240224	chr5	175874579	175875409	LINE|L2|L2b	-	chr5	175872809	175879873	CPLX2|ENST00000502265.5	+	175872809,175878651,175878907,175879847	175873020,175878770,175879083,175879873	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	79455468	79455537	79455514	-	High_confidence	17	23	110	4.349280	6.193605	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.763636
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	217756560	217756617	217756560	-	High_confidence	8	10	51	2.016484	4.895949	chr2	217756466	217756533	SINE|MIR|MIR3	-	chr2	217284022	217756593	DIRC3|NR_026597.1	-	217284022,217317965,217318919,217325845,217327996,217425301,217426590,217427390,217432922,217433947,217478380,217599611,217756467	217284863,217318201,217319177,217325970,217328152,217425522,217426786,217427473,217433021,217434116,217478558,217600829,217756593	0.509804
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	241372949	241372963	241372949	+	RAMPAGE_only	25	25	46	1.818790	4.406517	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241356296	241466030	FARP2|ENST00000373287.8	+	241356296,241373083,241403827,241404798,241407536,241411032,241413306,241417961,241431678,241434157,241434961,241436480,241441303,241456746,241462522,241463334,241463898,241465459	241356388,241373290,241403932,241404841,241407615,241411130,241413421,241418109,241431774,241434321,241435030,241436538,241441556,241456922,241462612,241463468,241463980,241466030	0.847826
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	25179951	25179997	25179951	-	High_confidence	6	6	20	0.790778	3.497156	chr13	25179771	25180118	LTR|ERVL-MaLR|MLT1J1	-	chr13	25172823	25180001	LINC00463|NR_120428.1	-	25172823,25173912,25176675,25179776	25173322,25174087,25176849,25180001	0.550000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	2728418	2728462	2728418	-	High_confidence	28	49	179	7.077465	6.528454	chr8	2728201	2728557	LTR|ERV1|LTR12C	+	chr8	2530091	2728451	LOC101927815|NR_125425.1	-	2530091,2595564,2596624,2604780,2674729,2728329	2530166,2595703,2596704,2604930,2674845,2728451	0.547486
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	73824887	73825096	73825034	-	RAMPAGE_only	18	18	144	5.693603	5.412201	chrX	73825002	73825055	SINE|MIR|MIRc	-	chrX	73823336	73829691	XIST|ENST00000649757.1	-	73823336,73829067	73827984,73829691	0.993056
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	34536102	34536133	34536102	-	RAMPAGE_only	3	4	8	0.316311	2.750000	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34515928	34539710	EAPP|ENST00000250454.7	-	34515928,34524696,34529357,34533443,34536093,34539554	34516586,34524807,34529475,34533539,34536275,34539710	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	43013460	43013479	43013460	-	High_confidence	4	4	9	0.355850	2.750000	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.888889
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	34244698	34244779	34244698	-	High_confidence	30	34	64	2.530490	5.538910	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34152824	34244698	MSTRG.17954.1	-	34152824,34175821,34179012,34182679,34218294,34244615	34169153,34175957,34179097,34182867,34218450,34244698	0.718750
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	17716592	17716623	17716592	-	High_confidence	4	4	14	0.553545	3.392747	chr8	17716571	17716853	SINE|Alu|AluY	-	chr8	17675216	17716590	MTUS1|ENST00000522149.5	-	17675216,17684327,17713213,17715766,17716472	17675252,17684542,17713252,17715901,17716590	0.642857
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	179517545	179517569	179517545	+	RAMPAGE_only	32	34	135	5.337753	6.419082	chr1	179516075	179517979	LINE|L1|L1PB1	-	chr1	179534492	179554713	AXDND1|ENST00000484455.1	+	179534492,179554511	179534962,179554713	0.651852
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	117877503	117877505	117877503	-	High_confidence	6	10	12	0.474467	3.095795	chr11	117877415	117877598	SINE|MIR|MIRb	+	chr11	117836975	117877486	FXYD6|NM_001164831.2	-	117836975,117839780,117840318,117841147,117841790,117841989,117842718,117877298	117838277,117839830,117840368,117841184,117841865,117842028,117842781,117877486	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	246355477	246355532	246355492	-	High_confidence	17	20	103	4.072508	5.322242	chr1	246355309	246355511	LINE|L1|L1PB1	+	chr1	245929897	246355335	SMYD3|ENST00000453676.5	-	245929897,246327200,246330479,246335366,246355030,246355180	245929937,246327337,246330537,246335474,246355094,246355335	0.689320
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr22	50783214	50783215	50783214	+	High_confidence	11	11	14	0.553545	2.873141	chr22	50783102	50783247	SINE|Alu|AluJr	-	chr22	50783253	50799305	RPL23AP82|ENST00000467796.5	+	50783253,50785172,50798654	50783294,50785293,50799305	0.928571
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	39310248	39310279	39310278	+	RAMPAGE_only	2	2	8	0.316311	2.750000	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	34988764	34988792	34988764	-	High_confidence	6	6	20	0.790778	3.321104	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	246355565	246355597	246355596	-	High_confidence	9	10	18	0.711700	3.734522	chr1	246355513	246357091	LINE|L1|L1PB1	+	chr1	245929897	246355335	SMYD3|ENST00000453676.5	-	245929897,246327200,246330479,246335366,246355030,246355180	245929937,246327337,246330537,246335474,246355094,246355335	0.777778
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	143018276	143018305	143018291	-	High_confidence	3	3	12	0.474467	3.022055	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	142982048	143018381	LY6E-DT|ENST00000522060.1	-	142982048,143009048,143018159	142982501,143009207,143018381	0.666667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	113873337	113873347	113873346	-	High_confidence	7	7	18	0.711700	3.683542	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.666667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	94702457	94702458	94702457	+	RAMPAGE_only	21	21	21	0.830317	4.011365	chr4	94702407	94702532	SINE|Alu|AluJb	-	chr4	94757967	95158448	BMPR1B|ENST00000515059.5	+	94757967,94875830,94996039,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547	94758068,94875900,94996134,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95158448	0.571429
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	123279469	123279515	123279469	-	RAMPAGE_only	6	8	38	1.502479	4.704511	chr8	123279322	123279782	LTR|ERVL-MaLR|MLT1H	-	chr8	123248449	123275541	ZHX1|NR_037873.1	-	123248449,123253321,123267272,123275339	123250320,123256171,123267386,123275541	0.842105
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	4143196	4143218	4143199	+	High_confidence	72	73	181	7.156542	5.520551	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.972376
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	58927693	58927738	58927693	+	High_confidence	3	4	16	0.632623	3.773557	chr11	58927656	58928383	LTR|ERVK|HERVK22-int	-	chr11	58927700	58956405	GLYATL1|ENST00000317391.8	+	58927700,58942539,58943542,58947045,58947857,58954769,58955175,58955609	58927829,58942584,58943666,58947165,58947965,58954896,58955353,58956405	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	106097477	106097524	106097504	+	RAMPAGE_only	8	15	39	1.542017	3.472034	chr11	106097423	106097517	LTR|ERVL-MaLR|MLT1L	-	chr11	106091466	106098699	AASDHPPT|ENST00000534152.1	+	106091466,106096742	106094654,106098699	0.974359
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	17026146	17026179	17026175	+	RAMPAGE_only	3	3	12	0.474467	2.845351	chrX	17026085	17026321	SINE|MIR|MIRc	+	chrX	16946861	17153272	REPS2|ENST00000303843.7	+	16946861,17006220,17022122,17025061,17029525,17047346,17052381,17054807,17062437,17068401,17069939,17074113,17077270,17103717,17133823,17135260,17138855,17147412	16947134,17006344,17022271,17025185,17029623,17047482,17052445,17054950,17062532,17068471,17069993,17074159,17077407,17103779,17133907,17135406,17138961,17153272	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	11193340	11193367	11193340	+	High_confidence	15	16	46	1.818790	4.419847	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.739130
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	112227202	112227225	112227202	+	High_confidence	12	13	37	1.462940	4.683542	chr11	112227196	112227258	SINE|MIR|MIR	+	chr11	112226431	112233810	PTS|ENST00000525803.1	+	112226431,112228593,112233162,112233431	112226526,112228673,112233233,112233810	0.864865
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	109725827	109725828	109725827	+	High_confidence	6	6	6	0.237233	2.584963	chr1	109725516	109725947	LTR|ERVK|LTR3	+	chr1	109725819	109775252	AL158847.1|ENST00000431955.1	+	109725819,109732174,109736939,109775071	109726068,109732350,109737141,109775252	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	38948205	38948246	38948236	-	High_confidence	23	23	93	3.677118	5.816828	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38838888	38948237	LINC00639|ENST00000556116.1	-	38838888,38941519,38948177	38839204,38941695,38948237	0.741935
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	997289	997319	997289	-	High_confidence	2	2	9	0.355850	2.750000	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.888889
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr10	88667593	88667676	88667634	+	RAMPAGE_only	255	262	1453	57.450034	5.961668	chr10	88667660	88667752	DNA|hAT-Ac|OldhAT1	+	chr10	88664457	88678814	LIPF|ENST00000355843.2	+	88664457,88665478,88667286,88667568,88668656,88669836,88671828,88673587,88675585,88676208,88678444	88664491,88665559,88667402,88667686,88668756,88669946,88671965,88673734,88675657,88676280,88678814	0.990365
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	7946878	7946898	7946878	+	High_confidence	185	186	446	17.634353	5.740304	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.905830
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	139344535	139344548	139344547	+	High_confidence	51	51	139	5.495908	5.457457	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.949640
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	48662919	48662935	48662934	+	RAMPAGE_only	13	13	25	0.988473	3.973661	chr18	48662701	48663071	LINE|L1|L1ME3A	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	22250904	22250905	22250904	-	RAMPAGE_only	43	45	51	2.016484	4.120112	chr2	22250730	22251099	LTR|ERVL-MaLR|THE1C	-	chr2	21933335	22531105	AC096570.1|ENST00000450551.1	-	21933335,21934966,21971740,22210864,22531035	21933547,21935094,21971836,22210994,22531105	0.529412
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	231186425	231186456	231186455	-	RAMPAGE_only	2	3	6	0.237233	2.584963	chr1	231186359	231186764	LTR|ERVL-MaLR|MLT1C	-	chr1	231184097	231187627	AL109810.2|ENST00000425559.1	-	231184097,231186075,231187516	231185236,231186173,231187627	0.833333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	81427414	81427462	81427414	-	High_confidence	2	2	13	0.514006	2.815072	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	158214159	158214177	158214176	+	RAMPAGE_only	3	3	6	0.237233	2.584963	chr3	158213942	158214205	DNA|TcMar-Tigger|MER2	+	chr3	158203071	158543687	RSRC1|ENST00000482822.2	+	158203071,158298038,158354856,158460934,158537091,158543334	158203245,158298075,158354908,158461003,158537198,158543687	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	94088222	94088249	94088222	+	RAMPAGE_only	6	6	20	0.790778	3.746439	chr14	94088069	94088490	LTR|ERVL|LTR67B	+	chr14	94081395	94102709	IFI27L1|ENST00000557066.5	+	94081395,94094749,94096855,94100738,94102476	94081449,94094899,94096965,94100771,94102709	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	193656716	193656717	193656716	+	RAMPAGE_only	8	8	10	0.395389	3.169925	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193638018	193697800	OPA1|ENST00000646544.1	+	193638018,193642764,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193638065,193642845,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193697800	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	55280218	55280232	55280218	-	High_confidence	4	4	11	0.434928	2.921928	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.909091
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	39407682	39407755	39407682	+	High_confidence	6	6	54	2.135101	5.286790	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.962963
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr18	14265482	14265483	14265482	+	RAMPAGE_only	4	4	7	0.276772	2.584963	chr18	14265410	14265727	LTR|ERVL-MaLR|MSTA-int	+	chr18	14225223	14342505	AP005212.4|ENST00000577614.2	+	14225223,14227610,14232524,14234686,14243011,14244561,14248966,14249431,14250287,14338697,14340381,14341521,14342224	14226062,14227760,14232637,14234815,14243223,14244784,14249023,14249485,14250407,14339640,14340651,14341635,14342505	0.571429
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	52236308	52236326	52236325	-	RAMPAGE_only	23	23	41	1.621095	4.671928	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.707317
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	65053820	65053821	65053820	-	RAMPAGE_only	6	6	8	0.316311	3.000000	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr22	36481305	36481346	36481334	-	High_confidence	16	18	63	2.490951	4.213175	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.904762
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	57746128	57746129	57746128	+	High_confidence	45	47	54	2.135101	4.951293	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.981481
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	130692962	130693006	130692981	+	High_confidence	14	14	81	3.202652	5.659184	chr2	130693010	130693142	SINE|Alu|AluY	+	chr2	130693281	130696388	FAR2P3|ENST00000434289.1	+	130693281,130696341	130693796,130696388	0.753086
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr22	30971753	30971763	30971757	+	High_confidence	2	2	8	0.316311	2.807355	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	77175226	77175300	77175226	+	High_confidence	3	3	18	0.711700	3.725481	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	4461944	4461961	4461960	-	High_confidence	8	10	23	0.909395	3.649001	chr4	4461848	4462205	LTR|ERVL|LTR79	+	chr4	4425160	4461954	STX18|ENST00000512195.5	-	4425160,4434769,4438393,4457190,4457422,4459371,4461905	4425222,4434858,4438509,4457257,4457500,4459487,4461954	0.869565
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	110440313	110440327	110440313	-	RAMPAGE_only	5	5	13	0.514006	3.418296	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.923077
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	142734113	142734114	142734113	+	RAMPAGE_only	4	6	7	0.276772	2.584963	chr3	142733680	142734206	LINE|L1|L1MEd	+	chr3	142724168	142807888	MSTRG.16356.2	+	142724168,142743484,142748257,142777631,142780833,142784703,142791018,142792823,142802168,142803976,142804435,142806007	142736533,142743586,142748460,142777763,142781029,142785040,142791158,142792967,142802344,142804178,142804630,142807888	0.857143
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	217842161	217842185	217842161	-	High_confidence	4	4	21	0.830317	3.826875	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	50226714	50226726	50226714	+	High_confidence	17	17	28	1.107089	4.137538	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	0.857143
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr17	40062335	40062377	40062376	+	High_confidence	6	6	18	0.711700	3.734522	chr17	40062342	40062502	SINE|MIR|MIR3	-	chr17	40062192	40093613	THRA|ENST00000394121.8	+	40062192,40074191,40076870,40077507,40083834,40084609,40086706,40088241,40089205,40093019	40062451,40074541,40076938,40077608,40083982,40084815,40086853,40088500,40089333,40093613	0.833333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	32601284	32601312	32601284	+	RAMPAGE_only	1	1	7	0.276772	2.584963	chr12	32601190	32601318	SINE|MIR|MIRb	-	chr12	32582378	32644751	FGD4|ENST00000494977.1	+	32582378,32598496,32600409,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624658,32624975,32625653,32633548,32637649,32638654,32640275,32642760,32644593	32582467,32598586,32600509,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32624751,32625068,32625779,32633689,32637855,32638795,32640453,32642842,32644751	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr9	70168430	70168457	70168451	+	High_confidence	5	7	22	0.869856	3.820889	chr9	70168209	70168496	SINE|Alu|AluSx1	+	chr9	70168614	70170782	MAMDC2|ENST00000460688.1	+	70168614,70170478	70168795,70170782	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	107872868	107872888	107872868	-	RAMPAGE_only	2	2	8	0.316311	2.521641	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	100831484	100831517	100831484	+	RAMPAGE_only	3	3	12	0.474467	3.251629	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100833277	100847301	MEG3|ENST00000455531.1	+	100833277,100845457	100836300,100847301	0.583333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	212792425	212792445	212792444	-	High_confidence	5	8	13	0.514006	2.855389	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.692308
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr6	3195732	3195773	3195772	-	High_confidence	48	49	110	4.349280	5.340458	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.909091
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	20957512	20957521	20957512	-	RAMPAGE_only	3	3	8	0.316311	2.807355	chr4	20957394	20957492	SINE|MIR|MIR	-	chr4	20729915	20984041	KCNIP4|ENST00000382149.9	-	20729915,20732005,20732680,20734627,20749661,20758820,20850542,20983813	20730129,20732068,20732785,20734735,20749732,20758890,20850667,20984041	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	43908188	43908195	43908194	+	RAMPAGE_only	3	3	7	0.276772	2.521641	chr11	43908061	43908432	LINE|L2|L2	-	chr11	43918803	43920266	ALKBH3|ENST00000529434.1	+	43918803,43919917	43919136,43920266	0.857143
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr7	118493444	118493461	118493444	+	RAMPAGE_only	2	2	7	0.276772	2.584963	chr7	118493210	118493482	LINE|L1|HAL1	+	chr7	118239974	118496171	ANKRD7|ENST00000634332.1	+	118239974,118259836,118322670,118322858,118426976,118431923,118433517,118433883,118443399,118474938,118475916,118477069,118493672,118496039	118239998,118259889,118322711,118322996,118427074,118432019,118433593,118433979,118443535,118475029,118476024,118477139,118493788,118496171	0.571429
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	119938027	119938074	119938039	+	RAMPAGE_only	31	34	117	4.626052	5.647008	chr4	119937855	119938568	LINE|L2|L2b	-	chr4	119939539	119964293	LOC100996694|NR_121639.1	+	119939539,119963787	119939675,119964293	0.572650
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	57641698	57641699	57641698	+	High_confidence	5	5	8	0.316311	2.750000	chr16	57641565	57641864	SINE|Alu|AluSz6	-	chr16	57640964	57651468	ADGRG1|ENST00000563414.5	+	57640964,57641590,57650252,57651199	57641064,57641708,57650351,57651468	0.750000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	49771658	49771673	49771672	+	RAMPAGE_only	3	3	7	0.276772	2.521641	chr14	49771716	49772002	SINE|Alu|AluSz	+	chr14	49768167	49783122	KLHDC2|ENST00000557247.1	+	49768167,49771593,49774560,49777838,49778177,49778410,49779594,49779747,49780212,49782369,49782829	49768621,49771673,49774678,49777954,49778259,49778494,49779675,49779806,49780322,49782457,49783122	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	67183405	67183421	67183420	-	High_confidence	2	2	7	0.276772	2.584963	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.857143
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	32927967	32927984	32927976	+	RAMPAGE_only	121	136	276	10.912739	6.447169	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.771739
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	61375001	61375033	61375032	+	High_confidence	2	2	7	0.276772	2.584963	chr5	61374879	61375051	LINE|L1|L1ME4b	+	chr5	61375111	61375855	AC122718.1|ENST00000439448.2	+	61375111	61375855	0.714286
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	24346923	24346963	24346959	+	RAMPAGE_only	4	6	22	0.869856	3.546439	chr8	24346931	24347022	LINE|L1|L1MC1	-	chr8	24294068	24354472	ADAM28|ENST00000520448.5	+	24294068,24299973,24309893,24310162,24311360,24313387,24320235,24321314,24323833,24326553,24329984,24331149,24332659,24335445,24339465,24341597,24343100,24343505,24349863,24351231,24351986,24353769,24354383	24294195,24300077,24309970,24310241,24311437,24313580,24320307,24321448,24324003,24326635,24330115,24331327,24332749,24335641,24339568,24341757,24343181,24343588,24349972,24351310,24352052,24353832,24354472	0.727273
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	42404743	42404776	42404759	+	High_confidence	4	5	25	0.988473	4.053661	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404778	42412315	CAPN3|ENST00000337571.8	+	42404778,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412315	0.800000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	50907420	50907428	50907420	-	RAMPAGE_only	2	2	8	0.316311	2.521641	chr2	50906857	50907497	LTR|ERV1|MER39	+	chr2	50745468	51027703	MSTRG.12708.65	-	50745468,50757987,50795615,50868175,50925937,51027501	50757764,50795553,50868141,50922687,50925955,51027703	0.875000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	62884031	62884042	62884031	+	High_confidence	2	2	8	0.316311	2.521641	chr11	62883998	62884123	SINE|MIR|MIRb	+	chr11	62884454	62888169	SLC3A2|ENST00000535768.1	+	62884454,62884631,62885176,62888134	62884525,62884690,62885608,62888169	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	6928364	6928375	6928374	+	RAMPAGE_only	13	17	29	1.146628	4.310443	chr4	6928389	6928549	SINE|MIR|MIRb	+	chr4	6909844	7033111	TBC1D14|ENST00000409757.8	+	6909844,6923372,6967303,6994183,6996324,6999084,7001144,7004843,7006631,7009876,7010652,7014447,7025003,7030326	6909951,6924111,6967424,6994302,6996407,6999202,7001251,7004924,7006726,7009948,7010781,7014557,7025262,7033111	0.862069
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	75127261	75127264	75127263	-	RAMPAGE_only	3	6	9	0.355850	2.750000	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.777778
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	65431680	65431713	65431712	+	RAMPAGE_only	8	8	20	0.790778	3.826875	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.950000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	147839218	147839255	147839237	-	High_confidence	16	16	36	1.423401	3.874670	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.805556
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr20	47500871	47500900	47500899	+	High_confidence	2	3	6	0.237233	2.584963	chr20	47500403	47500991	LINE|L2|L2a	-	chr20	47501856	47656877	NCOA3|NM_006534.3	+	47501856,47583182,47622228,47623910,47625380,47627001,47627560,47627921,47633495,47634047,47635321,47635890,47637647,47639007,47639576,47639924,47642212,47647072,47649004,47650981,47652405,47652930,47653405	47502019,47583261,47622330,47624083,47625481,47627176,47627749,47628023,47633636,47634195,47635713,47636762,47637783,47639202,47639822,47640051,47642384,47647366,47649097,47651276,47652580,47653072,47656877	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr13	78054835	78054855	78054854	+	High_confidence	10	10	26	1.028012	4.323856	chr13	78054705	78054994	LINE|L1|L1M4b	-	chr13	78054844	78578714	RNF219-AS1|ENST00000605996.5	+	78054844,78189607,78274252,78363571,78578476	78055064,78189696,78274337,78363731,78578714	0.730769
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr11	64226142	64226203	64226158	-	High_confidence	43	44	237	9.370721	6.837807	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.966245
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	6208681	6208682	6208681	-	High_confidence	106	106	106	4.191124	3.553613	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	116648895	116648917	116648895	-	RAMPAGE_only	4	4	21	0.830317	3.308751	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.952381
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	46266488	46266495	46266488	-	High_confidence	3	3	8	0.316311	2.807355	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.625000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr2	229232042	229232054	229232053	-	High_confidence	10	12	22	0.869856	3.784942	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.500000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	95061917	95061945	95061923	+	RAMPAGE_only	9	9	20	0.790778	3.471354	chr4	95061793	95062180	LTR|ERVL-MaLR|MSTA	+	chr4	95051678	95154817	BMPR1B|ENST00000509540.5	+	95051678,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547	95051772,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95154817	0.600000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr15	85750314	85750365	85750364	-	High_confidence	12	12	39	1.542017	4.218469	chr15	85750035	85750376	SINE|Alu|AluSz	+	chr15	85744108	85750281	AC021739.2|ENST00000558375.1	-	85744108,85748907,85750241	85744814,85749125,85750281	0.538462
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	112332567	112332573	112332572	+	High_confidence	6	9	17	0.672161	3.625000	chr3	112332311	112332606	SINE|Alu|AluY	+	chr3	112332499	112347830	CD200|ENST00000606471.5	+	112332499,112344961,112347557	112332701,112345288,112347830	0.588235
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr14	89944250	89944252	89944251	-	RAMPAGE_only	8	12	13	0.514006	3.418296	chr14	89944085	89944442	LTR|ERVL-MaLR|THE1B	-	chr14	89797156	89952605	EFCAB11|ENST00000553871.5	-	89797156,89931540,89932525,89950096,89952388	89797324,89931631,89932627,89950142,89952605	0.615385
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	109383499	109383516	109383499	-	High_confidence	2	3	9	0.355850	2.947703	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.888889
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chrX	74213754	74213784	74213780	-	High_confidence	2	2	9	0.355850	3.000000	chrX	74213589	74213937	LINE|L1|L1PB	+	chrX	74209975	74213660	Z83843.1|ENST00000604070.1	-	74209975	74213660	0.888889
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	34244813	34244826	34244813	-	High_confidence	13	16	40	1.581556	4.076139	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244796	MSTRG.17954.3	-	34175821,34179012,34182679,34200820,34218294,34239374,34244615	34175957,34179097,34182867,34200921,34218450,34239448,34244796	0.700000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr19	48868595	48868631	48868613	-	High_confidence	235	262	1322	52.270437	7.680622	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.979576
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	171251845	171251857	171251856	-	High_confidence	4	4	12	0.474467	3.095795	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171247579	171251794	AL445673.1|ENST00000455124.2	-	171247579,171251522	171247723,171251794	0.583333
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr1	156418570	156418589	156418570	-	RAMPAGE_only	8	9	25	0.988473	3.803509	chr1	156418390	156418698	SINE|Alu|AluSc	+	chr1	156404249	156417439	C1orf61|ENST00000608007.1	-	156404249,156414653	156404601,156417439	0.840000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr4	127822666	127822684	127822683	+	RAMPAGE_only	5	5	10	0.395389	2.725481	chr4	127822034	127822729	LINE|L1|L1MB4	-	chr4	127783548	127832968	HSPA4L|ENST00000505726.1	+	127783548,127794076,127795767,127798586,127801137,127801784,127803628,127804010,127805072,127805686,127807995,127811436,127818324,127820427,127822768,127823516,127827304,127830637,127832682	127783680,127794134,127795908,127798709,127801237,127801918,127803873,127804087,127805224,127805793,127808129,127811636,127818420,127820565,127822894,127823624,127827424,127830799,127832968	0.900000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr16	19393734	19393735	19393734	-	High_confidence	9	9	12	0.474467	3.251629	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19392212	19393468	AC130456.7|ENST00000623838.1	-	19392212	19393468	0.666667
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr8	143039256	143039267	143039266	+	High_confidence	6	6	17	0.672161	3.410417	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.941176
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr3	173979142	173979184	173979168	+	RAMPAGE_only	2	2	9	0.355850	2.500000	chr3	173979016	173979417	LINE|L2|L2	-	chr3	173816085	174116265	MSTRG.16571.1	+	173816085,173914034	173914001,174116265	0.888889
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	147383058	147383082	147383058	+	RAMPAGE_only	7	7	39	1.542017	4.649115	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147235015	147384205	STK32A|NM_001112724.1	+	147235015,147239538,147278123,147279246,147323897,147343005,147351064,147361516,147370653,147373168,147375089,147383440,147383889	147235199,147239686,147278179,147279398,147324071,147343043,147351154,147361614,147370770,147373294,147375218,147383505,147384205	0.641026
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr12	7137084	7137101	7137097	+	RAMPAGE_only	2	2	8	0.316311	2.750000	chr12	7137127	7137213	SINE|MIR|MIR1_Amn	+	chr12	7138681	7143198	CLSTN3|ENST00000544584.1	+	7138681,7141241,7142085,7142868,7143162	7138816,7141404,7142139,7143026,7143198	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	88281936	88281980	88281979	+	RAMPAGE_only	2	2	8	0.316311	2.500000	chr5	88281784	88282187	LTR|ERVL-MaLR|MSTB	+	chr5	88269046	88436602	MSTRG.18378.10	+	88269046,88270525,88291383,88410072,88436272	88269119,88287622,88292643,88410194,88436602	1.000000
cerebellum_female_fetal_19_weeks_and_female_fetal_37_weeks	chr5	77088108	77088109	77088108	+	High_confidence	5	6	8	0.316311	2.500000	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088008	77142094	ZBED3-AS1|ENST00000646594.1	+	77088008,77088744,77089345,77098654,77118319,77139260	77088472,77088799,77089403,77098747,77118521,77142094	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	51813744	51813804	51813744	+	RAMPAGE_only	5	7	34	0.782844	4.452820	chr15	51813619	51813862	SINE|MIR|MIRc	+	chr15	51751666	51816368	MSTRG.8270.4	+	51751666,51766372,51767070,51773711,51776931,51781043,51782720,51798196,51806376,51808419	51751712,51766567,51768418,51773834,51777018,51781174,51782828,51798340,51806521,51816368	0.941176
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	42524975	42524989	42524977	+	RAMPAGE_only	10	18	31	0.713770	4.567100	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42513913	42581440	SLC37A1|ENST00000352133.2	+	42513913,42518276,42525775,42534697,42535471,42539511,42542403,42543435,42547102,42554061,42558957,42562077,42563814,42564707,42565826,42566984,42568359,42574817,42579735,42580344	42514717,42518510,42525857,42534830,42535550,42539647,42542480,42543602,42547140,42554142,42559089,42562168,42563877,42564793,42565875,42567058,42568438,42574915,42579800,42581440	0.870968
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	149752626	149752676	149752626	-	High_confidence	4	4	28	0.644695	4.180833	chr3	149752625	149752732	LINE|L2|L2a	-	chr3	149738469	149752499	COMMD2|ENST00000473414.5	-	149738469,149750677,149751402,149752209,149752377	149741718,149750851,149751485,149752287,149752499	0.928571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	30971630	30971711	30971710	+	High_confidence	4	6	30	0.690745	4.423252	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.933333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	42704737	42704791	42704790	-	RAMPAGE_only	2	2	11	0.253273	2.921928	chr6	42704706	42704816	LINE|L2|L2a	-	chr6	42696599	42722574	PRPH2|ENST00000230381.6	-	42696599,42704364,42721753	42698507,42704611,42722574	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	53495025	53495040	53495039	+	High_confidence	5	6	9	0.207223	2.750000	chr3	53495032	53495170	LINE|L2|L2a	+	chr3	53495048	53812465	CACNA1D|NM_000720.3	+	53495048,53497151,53501614,53650778,53660132,53665659,53666338,53673712,53702640,53718300,53718681,53719754,53722313,53723433,53723791,53726878,53730441,53731076,53732015,53732814,53735373,53740279,53743010,53744739,53745623,53745822,53747301,53749267,53751748,53753571,53761997,53769972,53770423,53772832,53774586,53775885,53776602,53776859,53780025,53781565,53786821,53800248,53801057,53802146,53803422,53804982,53808648,53809977,53811112	53495233,53497461,53501720,53650918,53660275,53665812,53666535,53673816,53702810,53718388,53718741,53719781,53722474,53723659,53723999,53726999,53730556,53731146,53732082,53732962,53735503,53740339,53743117,53744827,53745731,53745875,53747448,53749469,53751907,53753682,53762081,53770017,53770552,53772898,53774678,53776045,53776730,53776956,53780128,53781667,53786952,53800365,53801425,53802173,53803572,53805146,53808770,53810298,53812465	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	44600486	44600516	44600486	-	RAMPAGE_only	2	3	11	0.253273	3.121928	chr15	44600285	44600441	SINE|Alu|AluJo	-	chr15	44596115	44597172	SPG11|ENST00000561391.1	-	44596115,44596783	44596355,44597172	0.636364
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	47795126	47795185	47795184	-	High_confidence	7	7	36	0.828894	4.558051	chr14	47794965	47800647	LINE|L1|L1PA2	+	chr14	47764952	47795014	LINC00648|NR_039996.1	-	47764952,47789905,47794971	47767757,47789943,47795014	0.722222
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	13277063	13277086	13277085	-	High_confidence	18	19	40	0.920993	4.115312	chr8	13277041	13277334	SINE|Alu|AluJr	+	chr8	13100605	13276873	DLC1|ENST00000503161.6	-	13100605,13102789,13110741,13115585,13276694	13100770,13102853,13110823,13115657,13276873	0.975000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	99466477	99466492	99466477	-	High_confidence	2	2	6	0.138149	2.584963	chr7	99466388	99466558	SINE|Alu|AluSx	-	chr7	99458194	99466331	ATP5MF|ENST00000292475.7	-	99458194,99459146,99460085,99466110	99458355,99459263,99460193,99466331	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	47622063	47622094	47622093	+	High_confidence	2	2	11	0.253273	2.846439	chr7	47621721	47622564	LTR|ERV1|LTR1A2	-	chr7	47621938	47629893	LINC01447|NR_108090.1	+	47621938,47623111,47627260,47628696	47622337,47623734,47627802,47629893	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	9743904	9743941	9743904	-	RAMPAGE_only	7	7	26	0.598645	4.363713	chr1	9743549	9743856	SINE|Alu|AluJo	-	chr1	9729027	9751581	CLSTN1|ENST00000435891.5	-	9729027,9731205,9731760,9733400,9733971,9734947,9735466,9735884,9741093,9743883,9744394,9749460,9749763,9751472	9730705,9731390,9731896,9733546,9734142,9735174,9735615,9736042,9741256,9744005,9744643,9749646,9749913,9751581	0.961538
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	68040273	68040285	68040273	+	High_confidence	2	2	8	0.184199	2.750000	chr6	68040221	68040931	LTR|ERV1|LTR30	-	chr6	68040289	68083574	AL646090.2|ENST00000647954.1	+	68040289,68040840,68082551	68040598,68040941,68083574	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	69425679	69425709	69425689	+	High_confidence	54	64	241	5.548982	4.830538	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425689	69429621	AP000439.3|ENST00000545202.1	+	69425689,69427362	69425806,69429621	0.979253
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	62864750	62864766	62864765	-	High_confidence	5	5	9	0.207223	2.725481	chr9	62864712	62865033	LTR|ERV1|LTR8	+	chr9	62861381	62864957	ADGRF5P1|ENST00000590130.1	-	62861381,62864789	62862193,62864957	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	99155935	99155953	99155935	-	High_confidence	5	5	16	0.368397	3.456565	chr12	99155702	99156003	LINE|CR1|L3	-	chr12	98743973	99155090	ANKS1B|NM_001204067.1	-	98743973,98751354,98773041,98781116,98782125,98798933,98800996,98832028,99053156,99084924,99154288,99154969	98745846,98751522,98773179,98781203,98782137,98799005,98801125,98832136,99053309,99085023,99154395,99155090	0.812500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	107754822	107754855	107754823	-	RAMPAGE_only	4	7	13	0.299323	3.700440	chr1	107754420	107755105	LINE|L2|L2a	+	chr1	107617583	107749508	VAV3|ENST00000529809.5	-	107617583,107642618,107704549,107704959,107748967,107749461	107617632,107642755,107704650,107705061,107749077,107749508	0.846154
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	37452362	37452368	37452367	+	RAMPAGE_only	6	7	10	0.230248	2.846439	chr17	37452121	37452411	SINE|Alu|AluSz	+	chr17	37450564	37476956	TADA2A|ENST00000619335.4	+	37450564,37458523,37462077,37465430,37467453,37470399,37471093,37474555,37476796	37450646,37458587,37462121,37465541,37467525,37470532,37471137,37474629,37476956	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	55982766	55982800	55982799	-	High_confidence	2	2	6	0.138149	2.584963	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	172958855	172958919	172958918	+	High_confidence	19	19	106	2.440631	4.929217	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.924528
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	16712828	16712933	16712879	-	High_confidence	21	39	226	5.203610	6.416345	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.964602
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	102419969	102419987	102419986	+	High_confidence	4	4	10	0.230248	2.947703	chr10	102419931	102420131	SINE|MIR|MIRc	+	chr10	102419831	102423136	FBXL15|ENST00000369956.6	+	102419831,102421353,102421786,102422803	102421182,102421507,102422292,102423136	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	101308255	101308317	101308316	+	High_confidence	8	8	42	0.967043	4.537171	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	117455261	117455295	117455261	+	RAMPAGE_only	7	7	18	0.414447	3.734522	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117415511	117579744	LINC00992|NR_046089.1	+	117415511,117437523,117471901,117546098,117555645,117577247	117415739,117437619,117471938,117546196,117555780,117579744	0.611111
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	160009699	160009700	160009699	+	High_confidence	5	5	8	0.184199	2.750000	chr5	160009550	160009733	DNA|hAT-Charlie|MER5B	+	chr5	160009112	160065543	TTC1|ENST00000231238.9	+	160009112,160010499,160035139,160036690,160043132,160049513,160051128,160064931	160009193,160010858,160035200,160036803,160043169,160049662,160051183,160065543	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	51354770	51354824	51354788	-	High_confidence	75	76	313	7.206770	5.652703	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	48708379	48708401	48708379	+	High_confidence	12	12	59	1.358465	4.779889	chr7	48708130	48708556	LTR|ERVL|MER70B	-	chr7	48708326	48711582	AC091770.2|ENST00000649656.1	+	48708326,48708794,48711156	48708703,48708914,48711582	0.525424
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	49227473	49227493	49227473	+	High_confidence	9	9	17	0.391422	3.292770	chr12	49227287	49227588	SINE|Alu|AluSx	+	chr12	49227544	49273166	MSTRG.5491.8	+	49227544,49228090,49256396,49269464,49269827,49272252	49227840,49228166,49256511,49269687,49269976,49273166	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	95720057	95720071	95720057	-	RAMPAGE_only	2	2	7	0.161174	2.521641	chr4	95719839	95720334	LTR|ERVL|MLT2B1	-	chr4	95162503	95549210	UNC5C|NM_003728.3	-	95162503,95170153,95182896,95185046,95202730,95206627,95216123,95218968,95219984,95242428,95244976,95250486,95278258,95301605,95335409,95548733	95169399,95170332,95183061,95185196,95202964,95206796,95216211,95219313,95220176,95242593,95245144,95250667,95278362,95301749,95335631,95549210	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	204140061	204140101	204140061	-	RAMPAGE_only	3	5	23	0.529571	4.316828	chr1	204139662	204140016	DNA|TcMar-Tigger|Tigger3a	-	chr1	204131955	204141262	ETNK2|ENST00000367197.5	-	204131955,204134514,204137103,204140034,204141024	204132256,204134588,204137249,204140118,204141262	0.913043
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	154928480	154928504	154928503	+	High_confidence	3	4	13	0.299323	3.418296	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.615385
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	75347042	75347076	75347042	+	High_confidence	7	7	20	0.460496	3.826875	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	151694575	151694607	151694587	+	High_confidence	10	11	29	0.667720	4.110577	chrX	151694449	151694631	SINE|MIR|MIRb	-	chrX	151695123	151700144	PRRG3|ENST00000448726.5	+	151695123,151698783,151699995	151695275,151698821,151700144	0.758621
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	23178109	23178172	23178171	-	High_confidence	3	3	23	0.529571	4.175736	chr1	23178154	23178237	SINE|MIR|MIRb	-	chr1	23084029	23177808	LUZP1|ENST00000302291.8	-	23084029,23091189,23109021,23168765,23177490	23089053,23094380,23109127,23169024,23177808	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	102431159	102431180	102431179	-	High_confidence	6	7	17	0.391422	3.500000	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.941176
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	246689675	246689717	246689698	+	High_confidence	6	8	30	0.690745	4.228165	chr1	246689571	246689829	LTR|ERVL|LTR41	+	chr1	246690046	246691821	AL591848.2|ENST00000442712.1	+	246690046,246691467	246690214,246691821	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	12522656	12522684	12522682	+	RAMPAGE_only	7	14	32	0.736794	3.537688	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.937500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	93184011	93184211	93184148	-	High_confidence	11	15	117	2.693904	5.939288	chr14	93183223	93184271	LTR|Gypsy|MamGyp-int	-	chr14	93182195	93184904	MOAP1|NM_022151.4	-	93182195,93184558,93184809	93184362,93184713,93184904	0.991453
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	62389257	62389304	62389257	+	RAMPAGE_only	2	2	10	0.230248	2.947703	chr5	62389203	62389505	SINE|Alu|AluSx	+	chr5	62306451	62391358	MSTRG.19796.4	+	62306451,62347129,62348047,62350065,62352587,62353274,62355158,62357690,62358136,62361241,62361465,62362449,62363177,62363694,62365242,62366413,62372437,62373686,62377660,62381117,62385483,62385783	62306536,62347224,62348167,62350120,62352710,62353375,62355254,62357745,62358299,62361332,62361529,62362541,62363320,62363899,62365353,62366481,62372551,62373837,62377762,62381253,62385707,62391358	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	203533425	203533440	203533429	-	High_confidence	3	3	9	0.207223	2.750000	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	52617083	52617098	52617097	+	High_confidence	6	7	10	0.230248	2.947703	chr13	52616905	52617215	SINE|Alu|AluSg	+	chr13	52617469	52643784	HNRNPA1L2|NM_001011725.1	+	52617469,52621988,52627437,52632421,52637304,52642405	52617682,52622264,52627578,52632494,52637446,52643784	0.600000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	47105998	47106009	47105998	-	RAMPAGE_only	1	1	7	0.161174	2.584963	chr3	47105925	47105951	LINE|L1|L1ME4b	-	chr3	47066991	47120432	SETD2|ENST00000638947.1	-	47066991,47083719,47086194,47088112,47097954,47097962,47097966,47101457,47103345,47105996,47113875,47116622,47120181	47067118,47084382,47086314,47088249,47097961,47097965,47098081,47101555,47103423,47106120,47114004,47116754,47120432	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	165370285	165370299	165370298	+	RAMPAGE_only	4	5	9	0.207223	2.947703	chr2	165370314	165370388	LINE|L2|L2a	+	chr2	165295772	165392310	SCN2A|NM_001040143.1	+	165295772,165297016,165307847,165308665,165309164,165310322,165312024,165313619,165313901,165315470,165323155,165326851,165331329,165342295,165344554,165354191,165365142,165367216,165370125,165373224,165374684,165377596,165380591,165381092,165386745,165388628	165296090,165297135,165307937,165308794,165309256,165310595,165312088,165313761,165314108,165315758,165323500,165326984,165331568,165342469,165344911,165354671,165365263,165367371,165370299,165373347,165374966,165377650,165380729,165381197,165387016,165392310	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	43974349	43974402	43974392	+	High_confidence	5	6	35	0.805869	4.822001	chr1	43973920	43974462	LINE|L2|L2a	-	chr1	43974486	43976823	ATP6V0B|ENST00000472505.6	+	43974486,43976089,43976301,43976589,43976772	43974614,43976173,43976379,43976659,43976823	0.771429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	217524	217567	217534	+	High_confidence	13	14	42	0.967043	4.765795	chr3	217318	217820	LINE|L2|L2a	-	chr3	217534	328223	CHL1|ENST00000449294.6	+	217534,244612,319682,325958,328166	217700,244692,319867,326064,328223	0.523810
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	49377300	49377322	49377321	-	High_confidence	3	3	8	0.184199	2.807355	chr13	49377270	49377379	LTR|ERV1|LTR9B	-	chr13	49310621	49377131	CAB39L|ENST00000425242.5	-	49310621,49331946,49339676,49350743,49359713,49376966	49310993,49332090,49339742,49350912,49359832,49377131	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	4542394	4542474	4542473	+	High_confidence	12	14	151	3.476748	4.620797	chr4	4542511	4542647	SINE|MIR|MIRb	+	chr4	4542417	4545060	STX18-AS1|ENST00000514763.1	+	4542417,4544737	4542625,4545060	0.907285
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	22007427	22007452	22007451	+	High_confidence	4	5	12	0.276298	3.251629	chr16	22006872	22007647	LINE|L2|L2a	+	chr16	22007637	22076378	MOSMO|ENST00000567004.1	+	22007637,22075486	22007696,22076378	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	125497354	125497374	125497354	-	RAMPAGE_only	10	11	19	0.437472	3.932138	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	51153852	51153902	51153858	+	High_confidence	7	7	44	1.013092	5.176151	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51154043	51155759	NME1|ENST00000456492.1	+	51154043,51155650	51154444,51155759	0.772727
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	231072232	231072326	231072232	+	RAMPAGE_only	5	5	46	1.059142	4.854977	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.978261
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	147131952	147131986	147131985	-	RAMPAGE_only	97	100	248	5.710156	6.732901	chr6	147131896	147132081	DNA|DNA|UCON78	+	chr6	146842565	147204540	STXBP5-AS1|ENST00000427394.5	-	146842565,146844318,146850824,146860617,146972044,147001440,147074804,147119416,147173592,147173814,147204412	146842809,146844712,146851331,146860743,146972070,147001543,147074847,147119477,147173647,147173948,147204540	0.657258
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	7704757	7704795	7704794	+	High_confidence	2	2	9	0.207223	2.725481	chr17	7704566	7704803	SINE|MIR|MIRc	+	chr17	7705201	7711375	EFNB3|NM_001406.3	+	7705201,7707957,7708434,7708634,7709166	7705720,7708250,7708527,7708739,7711375	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	74929727	74929741	74929727	-	RAMPAGE_only	2	2	8	0.184199	2.521641	chr11	74929615	74929915	LINE|L2|L2c	+	chr11	74842967	74949116	XRRA1|ENST00000527087.5	-	74842967,74844167,74845072,74848114,74851087,74906238,74907144,74921213,74927390,74930299,74933824,74936883,74940784,74945017,74948927	74843453,74844283,74845271,74848462,74851203,74906456,74907273,74921347,74927488,74930372,74933872,74937068,74940882,74945085,74949116	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	40113157	40113416	40113157	-	RAMPAGE_only	10	14	137	3.154401	5.486280	chr2	40113052	40113158	LINE|L2|L2b	+	chr2	40112145	40430304	SLC8A1|NM_021097.2	-	40112145,40139400,40160764,40164853,40170280,40174705,40174824,40175260,40178386,40428472	40115629,40139676,40160864,40164984,40170349,40174720,40174842,40175281,40178493,40430304	0.992701
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	118926261	118926309	118926308	-	High_confidence	3	4	16	0.368397	3.456565	chr11	118926282	118926450	LINE|L2|L2c	+	chr11	118893874	118926245	MSTRG.4771.1	-	118893874,118899916,118900618,118902989,118903235,118907482,118908269,118909913,118918825,118925237	118899508,118900198,118902908,118903074,118903452,118907602,118908655,118910015,118918879,118926245	0.937500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	2170454	2170460	2170454	+	RAMPAGE_only	3	3	8	0.184199	2.807355	chr9	2170425	2170469	LINE|CR1|L3	+	chr9	2160263	2192751	SMARCA2|ENST00000634781.1	+	2160263,2161685,2181570,2182140,2186095,2191265,2192703	2160619,2161903,2181676,2182242,2186228,2191408,2192751	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	47795013	47795072	47795013	-	High_confidence	8	9	52	1.197291	4.421030	chr14	47794965	47800647	LINE|L1|L1PA2	+	chr14	47764952	47795014	LINC00648|NR_039996.1	-	47764952,47789905,47794971	47767757,47789943,47795014	0.730769
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	168137346	168137600	168137436	-	High_confidence	29	29	325	7.483067	6.942910	chr1	168137391	168137473	LINE|L2|L2b	-	chr1	168079541	168137573	GPR161|NM_001267611.1	-	168079541,168087584,168090563,168096507,168104476,168137389	168085796,168087704,168090668,168097232,168104894,168137573	0.520000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	70085606	70085630	70085629	-	High_confidence	4	4	12	0.276298	3.459432	chr2	70085547	70085755	SINE|MIR|MIR	+	chr2	69964409	70085595	PCBP1-AS1|ENST00000628322.2	-	69964409,69996685,70018014,70032132,70051202,70077300,70085546	69964427,69996888,70018131,70032255,70051305,70077381,70085595	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	17910080	17910091	17910080	-	High_confidence	3	3	13	0.299323	3.180833	chr8	17908095	17912373	LTR|ERVK|HERVK-int	-	chr8	17864379	17910365	FGL1|ENST00000398056.6	-	17864379,17868547,17868915,17874018,17874361,17881998,17885491,17895446,17896169,17909884	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17895517,17896416,17910365	0.615385
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	101217580	101217599	101217580	-	High_confidence	7	12	25	0.575621	4.083856	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	45289379	45289380	45289379	+	RAMPAGE_only	6	6	9	0.207223	2.750000	chr21	45289210	45290050	LTR|ERV1|MER4D1	-	chr21	45288061	45297354	LINC00205|ENST00000647108.1	+	45288061,45289350,45290470,45296201	45288165,45289438,45293522,45297354	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	169697625	169697640	169697625	+	RAMPAGE_only	14	18	34	0.782844	4.675698	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169662721	169723183	CLCN3|ENST00000504131.6	+	169662721,169663113,169663526,169680049,169687657,169689042,169690529,169692113,169695611,169697188,169703997,169706867,169713078,169719906	169662738,169663114,169663617,169680207,169687757,169689230,169690652,169692320,169695692,169697734,169704184,169707266,169713295,169723183	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	91069605	91069657	91069626	-	High_confidence	3	4	25	0.575621	4.403856	chr8	91068863	91069609	LINE|L1|L1M6	-	chr8	91067910	91070189	OTUD6B-AS1|ENST00000524003.1	-	91067910,91069930	91069822,91070189	0.880000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	91022722	91022740	91022722	+	High_confidence	5	7	11	0.253273	2.845351	chr15	91022701	91022863	SINE|Alu|AluSx3	+	chr15	91022621	91031140	VPS33B-DT|ENST00000501381.3	+	91022621,91023312,91029880,91030658	91022740,91023971,91030241,91031140	0.727273
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	33194695	33194709	33194695	-	High_confidence	3	3	8	0.184199	2.521641	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	55416110	55416131	55416122	+	High_confidence	3	3	9	0.207223	2.725481	chr4	55415845	55416154	SINE|Alu|AluJb	-	chr4	55415270	55425545	TMEM165|ENST00000514904.5	+	55415270,55417071,55417802,55424537,55425375	55416157,55417247,55417985,55424643,55425545	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	128104821	128104841	128104840	-	RAMPAGE_only	6	6	14	0.322348	3.238901	chr3	128104760	128104822	LINE|CR1|L3	-	chr3	128081181	128100744	RUVBL1|ENST00000478892.1	-	128081181,128082482,128087705,128097299,128098881,128100594	128081409,128082574,128087844,128097498,128098945,128100744	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	74197147	74197162	74197147	-	RAMPAGE_only	4	5	11	0.253273	2.921928	chrX	74196376	74198555	LINE|L1|L1MA9	-	chrX	74167443	74293472	MSTRG.25817.10	-	74167443,74218620,74280930,74281701,74293351	74218577,74280494,74281085,74281848,74293472	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	51403418	51403476	51403428	-	RAMPAGE_only	5	12	68	1.565688	4.326074	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.970588
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	53523862	53523902	53523862	-	High_confidence	6	6	29	0.667720	4.566109	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.896552
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	43080033	43080034	43080033	+	RAMPAGE_only	10	10	15	0.345372	3.323231	chr8	43078293	43080600	DNA|TcMar-Tigger|Tigger1	+	chr8	43076646	43085780	FNTA|ENST00000525099.1	+	43076646,43084709,43085159	43083180,43084881,43085780	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	99410145	99410162	99410145	+	High_confidence	3	6	11	0.253273	3.277613	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.818182
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	2798799	2798822	2798821	+	High_confidence	4	4	8	0.184199	2.807355	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	152717584	152717585	152717584	+	RAMPAGE_only	16	16	16	0.368397	3.577820	chr6	152717403	152717757	LTR|ERVL-MaLR|THE1B	+	chr6	152697960	152724501	MYCT1|ENST00000532295.1	+	152697960,152721741,152722762	152698098,152722253,152724501	0.937500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	90258079	90258080	90258079	+	RAMPAGE_only	14	14	21	0.483521	3.975418	chr14	90258077	90258330	SINE|MIR|MIRb	+	chr14	90256577	90272550	PSMC1|ENST00000543772.2	+	90256577,90259159,90263317,90263661,90264040,90265069,90268223,90269396,90270197,90272272	90256600,90259213,90263442,90263847,90264169,90265166,90268413,90269548,90270352,90272550	0.523810
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	73837439	73837451	73837450	-	RAMPAGE_only	8	8	21	0.483521	3.260828	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.904762
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	2205823	2205885	2205867	+	High_confidence	77	83	842	19.386901	5.935315	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.983373
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	77710859	77710889	77710888	+	High_confidence	9	16	28	0.644695	3.624519	chr14	77710914	77711213	LINE|L1|L1MA1	+	chr14	77710643	77717584	SLIRP|ENST00000556956.1	+	77710643,77715771,77717495	77710896,77715879,77717584	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	110057228	110057266	110057228	-	High_confidence	3	3	14	0.322348	3.664498	chr13	110056667	110057319	LTR|ERV1|LTR58	+	chr13	110036196	110057286	AL355974.2|ENST00000617298.1	-	110036196,110057125	110036971,110057286	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	8783232	8783426	8783232	+	RAMPAGE_only	7	8	166	3.822121	5.395291	chr16	8783193	8783543	LINE|L2|L2c	-	chr16	8720715	8784575	ABAT|NM_001127448.1	+	8720715,8735698,8746000,8748107,8750421,8757756,8764068,8764737,8766207,8768192,8768824,8772779,8774889,8776343,8779478,8781308	8720934,8735809,8746098,8748137,8750539,8757806,8764149,8764830,8766270,8768256,8768973,8772917,8775057,8776490,8779590,8784575	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	131316016	131316053	131316016	+	RAMPAGE_only	1	1	10	0.230248	3.321928	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131264099	131394667	CDC42SE2|ENST00000505065.1	+	131264099,131315975,131359208,131385542,131390992	131264166,131316144,131359547,131385644,131394667	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	32580162	32580174	32580173	-	RAMPAGE_only	9	9	26	0.598645	3.151799	chr21	32580094	32580404	SINE|Alu|AluY	-	chr21	32576658	32582434	TCP10L|ENST00000491828.5	-	32576658,32577425,32578693,32582199	32576923,32577676,32578831,32582434	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	74490271	74490290	74490271	-	RAMPAGE_only	2	2	8	0.184199	3.000000	chr15	74490025	74490757	LINE|L2|L2a	+	chr15	74445976	74461188	UBL7|NM_001286742.1	-	74445976,74448477,74449185,74449625,74449935,74450801,74451435,74452295,74456551,74458683,74460667,74461036	74446227,74448600,74449353,74449675,74450069,74450859,74451520,74452378,74456671,74458896,74460778,74461188	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	142152931	142153182	142152931	+	RAMPAGE_only	11	13	169	3.891195	5.782731	chr5	142152915	142153329	DNA|TcMar-Tigger|Tigger8	-	chr5	142142977	142154195	NDFIP1|ENST00000503388.1	+	142142977,142151730	142144676,142154195	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	41402270	41402275	41402270	-	High_confidence	2	3	8	0.184199	2.500000	chr15	41402120	41402288	SINE|MIR|MIR	-	chr15	41396486	41402442	NDUFAF1|ENST00000558719.1	-	41396486,41402259	41397140,41402442	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	119497067	119497080	119497079	-	RAMPAGE_only	3	4	9	0.207223	3.000000	chr12	119496915	119497202	LTR|ERVL-MaLR|MLT1I	-	chr12	119387990	119594240	AC002070.1|ENST00000535511.5	-	119387990,119553547,119594181	119388328,119553645,119594240	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	103353956	103353957	103353956	+	High_confidence	7	7	9	0.207223	2.503258	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	61812129	61812166	61812161	+	High_confidence	8	8	22	0.506546	4.152391	chr14	61812067	61812179	LINE|L2|L2a	-	chr14	61812705	61996460	SYT16|ENST00000636344.1	+	61812705,61970131,61995875	61812810,61970311,61996460	0.590909
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	663425	663445	663429	+	High_confidence	3	3	10	0.230248	3.121928	chr19	663474	663667	LINE|L2|L2a	+	chr19	663481	669500	AC004156.1|ENST00000591866.2	+	663481,667211	664511,669500	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	31181202	31181267	31181203	-	RAMPAGE_only	15	22	79	1.818961	4.678989	chr1	31181174	31181290	SINE|MIR|MIR3	-	chr1	31179744	31239554	NKAIN1|ENST00000373736.6	-	31179744,31181859,31182529,31183816,31185246,31188049,31239493	31181712,31181941,31182590,31184014,31185327,31188187,31239554	0.987342
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	127120928	127120931	127120928	-	RAMPAGE_only	5	6	10	0.230248	2.725481	chr4	127120312	127121110	LTR|ERVL|LTR82B	-	chr4	127096890	127106771	AC093772.1|ENST00000513519.1	-	127096890,127106634	127097259,127106771	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	76445409	76445410	76445409	-	High_confidence	45	45	45	1.036117	3.839308	chr2	76445391	76445484	LTR|ERV1|MER66B	+	chr2	76445078	76445410	RN7SKP203|ENST00000363618.1	-	76445078	76445410	0.977778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	122789084	122789110	122789109	+	High_confidence	3	3	12	0.276298	3.418296	chr6	122788977	122789115	LTR|ERV1|PrimLTR79	+	chr6	122789169	122809720	SMPDL3A|ENST00000368440.4	+	122789169,122795676,122796823,122801309,122803663,122804908,122806232,122809090	122789458,122795890,122796968,122801406,122803833,122805089,122806357,122809720	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	41426070	41426117	41426079	+	High_confidence	10	10	33	0.759819	4.476410	chr21	41426026	41426113	DNA|hAT-Charlie|MER5A	-	chr21	41426030	41459214	MX1|NM_002462.4	+	41426030,41427205,41427754,41430532,41432049,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41426263,41427304,41427866,41430608,41432175,41436029,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	0.969697
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	50754760	50754774	50754773	-	RAMPAGE_only	6	6	12	0.276298	3.277613	chr14	50754738	50754803	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	37147694	37147795	37147694	-	High_confidence	6	10	36	0.828894	4.557854	chr2	37147318	37147662	LINE|L1|L1PA4	-	chr2	37107272	37147806	EIF2AK2|ENST00000405334.5	-	37107272,37107473,37109193,37114730,37119958,37122505,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687	37107395,37107527,37109295,37114859,37120139,37122664,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147806	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	26346422	26346436	26346426	+	RAMPAGE_only	3	4	12	0.276298	3.277613	chr7	26346432	26346464	DNA|hAT-Ac|OldhAT1	+	chr7	26354056	26372608	SNX10|ENST00000409367.5	+	26354056,26360974,26364534,26365046,26371820,26372490	26354184,26361061,26364635,26365145,26372033,26372608	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	34364762	34364791	34364762	+	High_confidence	3	3	10	0.230248	2.721928	chr19	34364780	34364874	LINE|L2|L2a	+	chr19	34364739	34402413	GPI|NM_001184722.1	+	34364739,34365259,34366344,34366782,34368582,34377734,34378933,34379517,34381465,34393247,34393727,34393913,34396300,34396580,34399206,34399555,34399718,34399900	34365019,34365388,34366435,34366851,34368702,34377881,34379005,34379562,34381519,34393308,34393771,34394066,34396430,34396657,34399335,34399631,34399785,34402413	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	183116089	183116104	183116089	-	High_confidence	2	2	11	0.253273	3.459432	chr3	183115868	183116225	LTR|ERV1|MER51E	-	chr3	183071045	183116075	MSTRG.18220.12	-	183071045,183071209,183072365,183086692,183092408,183094558,183115473	183071120,183071357,183072487,183086788,183092545,183094605,183116075	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	135965722	135965773	135965723	+	High_confidence	39	63	480	11.051915	6.520261	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.993750
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	194632856	194632896	194632868	+	High_confidence	4	5	40	0.920993	3.463010	chr3	194632668	194632869	SINE|MIR|MIR	-	chr3	194632922	194645401	AC046143.1|ENST00000447139.1	+	194632922,194644674	194633167,194645401	0.975000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	68413581	68413740	68413622	+	High_confidence	8	8	64	1.473589	5.616091	chr17	68408123	68414142	LINE|L1|L1PA3	-	chr17	68413622	68533431	PRKAR1A|NM_001278433.1	+	68413622,68515393,68522755,68523724,68524015,68524911,68525753,68527839,68528869,68529919,68530276	68413795,68515576,68522926,68523816,68524077,68524958,68525912,68527900,68528991,68530001,68533431	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	8649422	8649446	8649445	+	RAMPAGE_only	3	3	10	0.230248	2.947703	chr20	8649465	8649857	LTR|ERVL-MaLR|MSTC	+	chr20	8658620	8968360	PLCB1|ENST00000487210.5	+	8658620,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448,8788632,8789517,8790174,8802055,8962195,8965089,8967219	8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788525,8788722,8789575,8790261,8802173,8963010,8965151,8968360	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	52570163	52570181	52570180	+	RAMPAGE_only	12	12	25	0.575621	3.931838	chr13	52569964	52570306	LINE|L1|L1PA16	-	chr13	52488992	52587090	TPTE2P3|NR_002793.1	+	52488992,52490108,52497561,52499042,52499240,52499821,52503319,52504280,52514787,52521058,52522633,52529264,52531600,52531846,52532656,52552452,52552637,52571231,52573365,52577070,52579343,52583095,52584632,52586809	52489343,52490215,52497674,52499144,52499381,52499930,52503373,52504334,52514850,52521109,52522795,52529384,52531700,52531910,52532721,52552534,52552726,52571293,52573446,52577176,52579435,52583188,52584703,52587090	0.600000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	158228657	158228717	158228657	-	High_confidence	5	6	32	0.736794	4.232760	chr4	158226186	158228751	LTR|ERV1|Harlequin-int	-	chr4	158124473	158228652	MSTRG.19304.1	-	158124473,158130785,158155610,158170465,158172867,158228485	158127614,158131012,158155825,158171599,158172920,158228652	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	107860618	107860712	107860618	-	RAMPAGE_only	6	6	31	0.713770	4.418157	chr5	107860285	107860584	DNA?|DNA?|MER124	-	chr5	107859052	108381109	FBXL17|ENST00000619412.4	-	107859052,107881036,108020924,108186116,108224120,108348398,108364737,108367830,108380698,108381055	107861860,107881179,108021001,108186247,108224228,108348530,108364995,108367953,108380923,108381109	0.935484
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	30429287	30429289	30429288	-	RAMPAGE_only	6	12	13	0.299323	3.584963	chr13	30428989	30429302	SINE|Alu|AluSq2	+	chr13	30202629	30307487	KATNAL1|NM_032116.4	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30307330	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307487	0.692308
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	71417115	71417126	71417115	+	RAMPAGE_only	2	2	8	0.184199	2.807355	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	86482577	86482578	86482577	+	RAMPAGE_only	7	7	7	0.161174	2.521641	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	64217358	64217369	64217367	+	RAMPAGE_only	3	5	9	0.207223	2.750000	chr5	64216848	64217666	LINE|L1|L1ME1	-	chr5	64165881	64372869	RNF180|ENST00000389100.8	+	64165881,64200807,64212064,64213557,64217360,64325185,64330280,64369614	64165953,64200942,64212160,64214517,64217396,64325411,64330406,64372869	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	94130224	94130250	94130224	-	High_confidence	5	5	13	0.299323	3.584963	chr14	94130148	94130231	LINE|L1|L1ME1	-	chr14	94128376	94129580	IFI27L2|ENST00000556552.1	-	94128376,94129557	94129291,94129580	0.692308
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	68293011	68293272	68293208	+	RAMPAGE_only	32	34	322	7.413993	5.825987	chr15	68293137	68293227	DNA|DNA|MER135	+	chr15	68277802	68295865	FEM1B|ENST00000306917.4	+	68277802,68289606	68278665,68295865	0.996894
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	216498495	216498515	216498513	+	High_confidence	2	4	8	0.184199	2.521641	chr2	216498429	216498540	SINE|Alu|AluSg4	-	chr2	216498796	216501467	RPL37A|NM_000998.4	+	216498796,216499269,216499948,216501340	216498877,216499398,216500031,216501467	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	50159437	50159441	50159440	-	RAMPAGE_only	5	7	10	0.230248	3.169925	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	29424381	29424399	29424398	+	High_confidence	5	5	10	0.230248	2.725481	chr10	29424112	29424697	LTR|ERVL-MaLR|MLT1F2	-	chr10	29423559	29430456	MSTRG.2706.1	+	29423559	29430456	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	152369025	152369026	152369025	+	RAMPAGE_only	9	9	9	0.207223	2.503258	chr3	152367042	152371316	LINE|L1|L1PA7	-	chr3	152415057	152455577	MBNL1|ENST00000460166.1	+	152415057,152432716,152445281,152455541	152415111,152432920,152445539,152455577	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	49665234	49665250	49665249	+	RAMPAGE_only	2	2	7	0.161174	2.584963	chr3	49665244	49665310	SINE|MIR|MIRb	+	chr3	49554488	49671549	BSN|NM_003458.3	+	49554488,49624974,49642267,49650611,49651542,49660485,49662875,49663786,49664422,49664798,49665228,49667589	49554826,49625383,49643152,49651079,49658196,49662562,49663666,49663886,49664554,49664853,49665318,49671549	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	153336567	153337069	153337068	+	RAMPAGE_only	47	80	973	22.403153	5.699574	chr4	153336971	153337087	LINE|L2|L2a	-	chr4	153322649	153339320	MSTRG.19277.14	+	153322649,153324077,153328529,153334813	153322828,153324148,153328670,153339320	0.996917
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	78054974	78055046	78055024	+	High_confidence	20	22	111	2.555755	5.608366	chr13	78055000	78055239	LTR|ERV1|LTR12C	-	chr13	78054996	78605557	RNF219-AS1|ENST00000606376.5	+	78054996,78274252,78363571,78605300	78055064,78274337,78363731,78605557	0.540541
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	197235246	197235253	197235252	-	RAMPAGE_only	3	3	7	0.161174	2.521641	chr3	197234967	197235950	LINE|L1|L1MEc	+	chr3	197140144	197260461	DLG1|ENST00000453607.5	-	197140144,197142717,197194424,197260258	197140264,197142768,197194589,197260461	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	135965649	135965674	135965649	+	High_confidence	3	3	11	0.253273	3.027169	chr3	135965610	135965668	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	137385536	137385584	137385583	-	RAMPAGE_only	6	6	20	0.460496	3.471354	chr7	137385414	137385650	LINE|CR1|L3	-	chr7	137381036	137846536	DGKI|ENST00000453654.6	-	137381036,137395597,137397376,137407874,137412169,137444076,137465907,137466901,137469549,137485373,137487609,137493782,137521865,137552368,137571174,137572764,137577221,137578269,137581849,137585208,137587096,137597846,137599822,137608965,137609534,137619823,137623482,137645471,137654731,137656465,137678556,137843387,137846461	137391336,137395697,137397413,137407995,137412207,137444102,137466035,137466942,137469619,137485418,137487689,137493836,137521966,137552568,137571286,137572838,137577284,137578325,137581928,137585346,137587210,137597907,137599905,137609064,137609609,137619940,137623554,137645537,137654788,137656540,137678652,137843462,137846536	0.950000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	22909559	22909574	22909559	-	RAMPAGE_only	1	2	8	0.184199	2.807355	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22906027	22919110	RBM23|ENST00000554955.5	-	22906027,22908332,22909482,22911327,22918998	22906368,22908380,22909595,22911403,22919110	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	160199150	160199156	160199155	+	High_confidence	682	778	1406	32.372901	5.499653	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.959459
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	48907235	48907256	48907239	-	High_confidence	3	3	12	0.276298	3.459432	chr4	48907159	48907231	SINE|MIR|MIRb	-	chr4	48885381	48906937	OCIAD2|ENST00000508069.6	-	48885381,48892771,48894005,48897803,48904483,48906657	48885565,48892889,48894053,48897857,48904611,48906937	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	64439294	64439308	64439307	+	RAMPAGE_only	4	4	12	0.276298	3.027169	chr12	64439324	64439679	DNA|hAT-Charlie|Charlie4a	+	chr12	64404372	64448684	XPOT|NM_007235.4	+	64404372,64409961,64414906,64416697,64418045,64418875,64420069,64420352,64421234,64423004,64423181,64424598,64425037,64425337,64425814,64428050,64430048,64431537,64433413,64434506,64434793,64435626,64439243,64445074,64448104	64404804,64410095,64414989,64416754,64418115,64419094,64420254,64420521,64421471,64423043,64423244,64424723,64425182,64425457,64425909,64428120,64430287,64431823,64433603,64434623,64434909,64435674,64439315,64445131,64448684	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	148433428	148433447	148433428	+	RAMPAGE_only	5	5	12	0.276298	3.251629	chr1	148433382	148433731	LTR|ERV1|MER66-int	-	chr1	148444944	148448219	MSTRG.1569.1	+	148444944	148448219	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	37903557	37903558	37903557	-	High_confidence	9	9	12	0.276298	3.027169	chr9	37903533	37903620	SINE|MIR|MIR3	+	chr9	37887603	37904110	SLC25A51|ENST00000377716.6	-	37887603,37899828,37903530	37888592,37899950,37904110	0.583333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	39369884	39369908	39369893	-	RAMPAGE_only	3	6	18	0.414447	3.947703	chr12	39369860	39369969	LINE|Penelope|Penelope1_Vert	+	chr12	39357250	39367927	KIF21A|ENST00000552908.1	-	39357250,39358177,39363097,39366349,39367029,39367882	39357437,39358373,39363213,39366517,39367188,39367927	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	13443715	13443742	13443730	+	RAMPAGE_only	4	4	29	0.667720	4.494680	chr18	13443716	13444219	LINE|L1|L1MC5	-	chr18	13278104	13652754	LDLRAD4|NM_181481.4	+	13278104,13387340,13438243,13621116,13643358,13645126	13278188,13387762,13438384,13621271,13643412,13652754	0.827586
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	69314759	69314760	69314759	-	High_confidence	6	7	9	0.207223	2.947703	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	177744861	177744930	177744878	-	RAMPAGE_only	7	10	49	1.128216	4.507151	chr1	177744683	177745823	LINE|L2|L2a	+	chr1	177393678	177597709	AL122019.1|ENST00000458070.1	-	177393678,177573727,177576710,177597570	177393788,177573784,177576950,177597709	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	112570296	112570307	112570306	+	High_confidence	3	4	6	0.138149	2.584963	chr12	112570281	112570552	LTR|ERVL-MaLR|MLT1K	+	chr12	112570379	112847731	RPH3A|ENST00000549736.5	+	112570379,112649413,112651766,112792142,112828300,112836490,112847695	112570544,112649463,112651827,112792263,112828389,112836502,112847731	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	29317853	29317866	29317865	-	High_confidence	5	6	20	0.460496	3.892407	chr12	29317690	29317914	SINE|MIR|MIRb	-	chr12	29280414	29317848	LOC100506606|NR_103860.1	-	29280414,29282163,29292214,29293065,29307849,29309770,29317707	29281542,29282360,29292328,29293540,29308044,29309903,29317848	0.650000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	163427011	163427053	163427028	+	RAMPAGE_only	3	3	18	0.414447	3.725481	chr6	163425976	163427403	LINE|L1|L1MC5a	-	chr6	163423133	163563454	QKI|ENST00000537041.5	+	163423133,163455278,163478779,163534981,163561981,163563443	163423213,163455421,163478896,163535125,163562069,163563454	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	39170575	39170607	39170575	-	High_confidence	4	4	14	0.322348	3.546594	chr14	39170565	39170853	SINE|Alu|AluSp	+	chr14	39147810	39170532	TRAPPC6B|ENST00000469361.5	-	39147810,39151745,39154210,39158284,39170014	39150381,39151839,39154294,39159550,39170532	0.785714
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	106097399	106097523	106097461	+	RAMPAGE_only	18	20	144	3.315575	4.483242	chr11	106097423	106097517	LTR|ERVL-MaLR|MLT1L	-	chr11	106091466	106098699	AASDHPPT|ENST00000534152.1	+	106091466,106096742	106094654,106098699	0.993056
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	183115739	183115766	183115765	-	High_confidence	7	7	38	0.874943	4.563717	chr3	183115570	183115868	SINE|Alu|AluSq2	+	chr3	183071045	183116075	MSTRG.18220.12	-	183071045,183071209,183072365,183086692,183092408,183094558,183115473	183071120,183071357,183072487,183086788,183092545,183094605,183116075	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	25032566	25032725	25032673	+	High_confidence	18	25	196	4.512865	5.396627	chr15	25032433	25032891	LINE|L1|L1MEf	-	chr15	25031872	25036490	PWAR6|ENST00000552334.1	+	25031872	25036490	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	214327027	214327130	214327095	+	High_confidence	14	15	98	2.256433	5.790944	chr1	214327045	214327127	SINE|MIR|MIRc	-	chr1	214327493	214331070	SMYD2|ENST00000484459.1	+	214327493,214330167,214330949	214327724,214330278,214331070	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	643625	643642	643635	-	High_confidence	15	15	60	1.381489	4.812650	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.550000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	58858176	58858435	58858434	+	RAMPAGE_only	18	18	412	9.486227	6.505508	chr5	58858414	58858654	LINE|L2|L2b	-	chr5	58583043	58859394	RAB3C|NM_138453.3	+	58583043,58617642,58726001,58825037,58851163	58583232,58617870,58726120,58825162,58859394	0.997573
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	8320379	8320401	8320400	+	High_confidence	9	9	33	0.759819	4.478232	chr12	8318355	8321168	LTR|ERV1|HERVS71-int	-	chr12	8320380	8369555	AC092745.2|ENST00000537764.1	+	8320380,8368981	8320426,8369555	0.757576
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	161153511	161153543	161153542	+	High_confidence	7	7	25	0.575621	3.720176	chr1	161153494	161153649	LINE|L1|L1PA6	+	chr1	161153743	161158856	UFC1|NM_016406.3	+	161153743,161156949,161157253,161157616,161158120,161158411	161154120,161157017,161157317,161157693,161158211,161158856	0.960000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	4382228	4382250	4382237	+	RAMPAGE_only	200	281	649	14.943110	4.213087	chr10	4382142	4382281	LINE|L2|L2	-	chr10	4384245	4410612	LINC00703|NR_108054.1	+	4384245,4391723,4408454	4384477,4391826,4410612	0.873652
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	51355012	51355015	51355014	-	High_confidence	5	8	9	0.207223	3.000000	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	202913323	202913340	202913330	-	RAMPAGE_only	7	11	29	0.667720	3.263604	chr2	202913304	202913405	SINE|MIR|MIR	+	chr2	202874781	202912226	WDR12|ENST00000261015.4	-	202874781,202882710,202883608,202884197,202884394,202892616,202894580,202896064,202897299,202899530,202901024,202907864,202911435	202880937,202882783,202883741,202884303,202884535,202892702,202894626,202896219,202897415,202899637,202901119,202907959,202912226	0.931034
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	95121537	95121554	95121537	-	High_confidence	8	8	25	0.575621	4.316828	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.760000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	130428509	130428553	130428523	-	High_confidence	128	129	648	14.920085	6.615462	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046259.1	-	130416749,130419070,130425090,130425913,130427703	130418298,130419245,130425158,130426038,130428546	0.983025
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	157394473	157394581	157394501	+	RAMPAGE_only	197	204	477	10.982841	5.644824	chr5	157394544	157394671	DNA|hAT-Charlie|MER5A	+	chr5	157269341	157395598	CYFIP2|NM_014376.3	+	157269341,157285338,157287018,157294782,157296672,157300714,157302793,157304237,157307760,157309742,157311663,157314343,157314968,157319761,157320654,157323920,157325481,157326170,157327972,157330741,157333326,157339056,157341069,157359004,157360281,157361467,157382589,157383264,157389188,157390520,157392832	157269583,157285478,157287108,157294860,157296774,157300896,157302890,157304366,157307865,157309834,157311781,157314463,157315094,157319928,157320802,157324074,157325638,157326267,157328049,157330850,157333446,157339256,157341157,157359148,157360372,157361598,157382662,157383359,157389427,157390668,157395598	0.993711
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	21360437	21360472	21360454	-	RAMPAGE_only	2	2	11	0.253273	3.121928	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351478	21358402	SUPT16H|ENST00000557394.5	-	21351478,21353487,21353702,21354410,21357196,21357926	21352818,21353565,21353832,21354540,21357366,21358402	0.818182
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	13606470	13606495	13606488	+	RAMPAGE_only	3	5	13	0.299323	3.180833	chrX	13606482	13606534	LINE|RTE-BovB|MamRTE1	-	chrX	13569621	13633575	EGFL6|ENST00000380602.3	+	13569621,13589555,13594835,13599974,13603316,13606378,13608323,13617729,13619162,13623820,13627010,13632984	13569935,13589668,13594928,13600094,13603436,13606513,13608446,13618053,13619243,13623925,13627276,13633575	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	65667723	65667759	65667723	-	RAMPAGE_only	17	18	41	0.944018	4.734184	chr5	65667690	65667871	DNA|hAT-Charlie|MER5A	+	chr5	65665927	65722114	SGTB|NM_019072.2	-	65665927,65671914,65672243,65680493,65680655,65685367,65704278,65708488,65712960,65720707,65721916	65670357,65671998,65672281,65680556,65680794,65685472,65704378,65708558,65713064,65720829,65722114	0.975610
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	62308509	62308510	62308509	+	RAMPAGE_only	5	5	7	0.161174	2.807355	chr5	62308376	62308950	LINE|L1|L1MA9	+	chr5	62306457	62353021	KIF2A|ENST00000504883.1	+	62306457,62347129,62348047,62350065,62352587	62306536,62347224,62348167,62350120,62353021	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	93773408	93773412	93773408	+	RAMPAGE_only	5	7	11	0.253273	2.913977	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	228611437	228611491	228611440	-	High_confidence	11	12	64	1.473589	4.264387	chr2	228611386	228611594	SINE|MIR|MIRb	+	chr2	228483260	228611395	LINC01807|ENST00000432481.2	-	228483260,228488682,228506326,228611251	228483498,228488793,228506509,228611395	0.843750
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	11963658	11964291	11963658	-	RAMPAGE_only	111	178	1685	38.796827	6.970237	chr11	11963645	11963694	DNA|hAT-Ac|OldhAT1	-	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.986350
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	42404744	42404760	42404759	+	High_confidence	10	11	24	0.552596	4.084963	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404778	42412315	CAPN3|ENST00000337571.8	+	42404778,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412315	0.958333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	8658878	8658905	8658885	-	High_confidence	31	52	135	3.108351	6.255616	chr11	8658830	8658957	DNA|DNA|MER126	-	chr11	8612036	8658836	TRIM66|ENST00000299550.10	-	8612036,8618749,8619382,8620049,8620445,8621031,8621644,8622815,8624358,8624708,8638653,8640226,8643008,8645740,8646446,8647969,8648415,8649739,8651799,8658736	8618003,8618968,8619535,8620124,8620572,8621321,8621819,8622876,8624454,8625228,8638815,8641152,8643126,8645887,8646561,8648086,8648548,8649887,8651903,8658836	0.807407
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	107754873	107754877	107754873	-	RAMPAGE_only	2	2	7	0.161174	2.584963	chr1	107754420	107755105	LINE|L2|L2a	+	chr1	107617583	107749508	VAV3|ENST00000529809.5	-	107617583,107642618,107704549,107704959,107748967,107749461	107617632,107642755,107704650,107705061,107749077,107749508	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	9406391	9406406	9406405	-	RAMPAGE_only	3	4	12	0.276298	3.095795	chr12	9406304	9406453	LTR|ERV1|HERVE-int	+	chr12	9398354	9414851	AC141557.1|ENST00000540982.1	-	9398354,9400235,9402426,9414802	9398484,9400326,9402556,9414851	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	22024645	22024655	22024645	+	High_confidence	12	12	19	0.437472	3.155222	chr1	22024621	22024905	SINE|Alu|AluSx1	-	chr1	22024557	22031223	LINC00339|ENST00000635675.2	+	22024557,22025291,22030279	22024936,22025372,22031223	0.947368
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	97758726	97758765	97758764	+	RAMPAGE_only	3	3	17	0.391422	3.734522	chr3	97758479	97758933	LINE|L2|L2a	-	chr3	96814790	97761532	MSTRG.17588.3	+	96814790,96866824,96906270,96936013,96987329,97226263,97243951,97405149,97448124,97448567,97475351,97479293,97483933,97532357,97592611,97610792,97637872,97720260,97735924,97747422,97748586	96815008,96866889,96906348,96936133,96987993,97226419,97244287,97405274,97448172,97448730,97475460,97479364,97484059,97532543,97592737,97610854,97638082,97720410,97736118,97747572,97761532	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	79973216	79973232	79973231	+	RAMPAGE_only	4	4	11	0.253273	3.121928	chr12	79972933	79973792	LINE|L1|L1MC5a	+	chr12	80028892	80029631	RPL7P38|ENST00000488396.1	+	80028892	80029631	0.545455
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	26474333	26474346	26474333	+	RAMPAGE_only	4	4	25	0.575621	4.323856	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.560000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	153006722	153006777	153006722	-	RAMPAGE_only	2	2	13	0.299323	3.251629	chr6	153006708	153006915	SINE|MIR|MIRb	-	chr6	153004458	153044043	RGS17|ENST00000367225.6	-	153004458,153024261,153026453,153043899	153011762,153024496,153026543,153044043	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	29193394	29193414	29193399	+	High_confidence	7	8	21	0.483521	3.681881	chr21	29193019	29193674	LTR|ERV1|MER50B	+	chr21	29193493	29288205	LINC00189|NR_027072.2	+	29193493,29287983	29194260,29288205	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	57746128	57746129	57746128	+	High_confidence	27	27	28	0.644695	4.208410	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.964286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	166586897	166586905	166586897	-	High_confidence	3	3	7	0.161174	2.521641	chr6	166586891	166586986	LTR|ERVL-MaLR|MLT1J2	+	chr6	166585603	166587594	RAMACL|ENST00000444122.2	-	166585603	166587594	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	103607652	103607653	103607652	+	High_confidence	18	18	24	0.552596	3.969002	chrX	103607556	103607707	SINE|MIR|MIRb	+	chrX	103607450	103609927	TCEAL3|ENST00000372628.5	+	103607450,103608603,103609042	103607716,103608673,103609927	0.958333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	112999778	112999811	112999796	-	High_confidence	3	3	12	0.276298	3.251629	chr9	112999325	112999997	LTR|ERVL|MER21C	-	chr9	112957742	112999091	ZNF883|ENST00000639709.1	-	112957742,112959125,112959349,112959792,112966649,112968821,112969339,112998120	112958036,112959171,112959451,112959903,112966740,112968941,112969380,112999091	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	99893225	99893297	99893296	-	High_confidence	13	13	68	1.565688	4.544098	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.955882
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	37178584	37178613	37178584	+	High_confidence	3	3	11	0.253273	2.663533	chr20	37178563	37178867	SINE|Alu|AluSx	-	chr20	37178409	37210150	RPN2|ENST00000456102.5	+	37178409,37184179,37203884,37204766,37207272,37210046	37178514,37184373,37203960,37204901,37207449,37210150	0.818182
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	46467861	46467872	46467861	-	High_confidence	6	7	14	0.322348	3.392747	chr13	46467669	46468268	LTR|ERV1|HERVE-int	+	chr13	46455138	46467857	LINC01198|ENST00000648133.1	-	46455138,46457839,46460944,46464674,46465842,46466608,46467660	46455511,46457913,46461170,46464819,46465987,46466709,46467857	0.928571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	138347725	138347773	138347725	+	High_confidence	21	21	139	3.200450	4.385601	chr3	138347598	138347891	SINE|Alu|AluSx	-	chr3	138347696	138405533	MRAS|ENST00000289104.8	+	138347696,138372865,138397323,138398468,138400533,138402169	138348325,138373076,138397477,138398568,138400613,138405533	0.992806
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	55671846	55671859	55671858	+	High_confidence	4	5	9	0.207223	3.000000	chr14	55671902	55672073	DNA|hAT-Charlie|MER5A	+	chr14	55671314	55684579	KTN1|ENST00000556631.1	+	55671314,55678351,55679564,55684098	55675918,55678444,55679685,55684579	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	108223508	108223517	108223516	+	High_confidence	3	4	6	0.138149	2.584963	chr11	108223533	108223589	SINE|MIR|MIR	+	chr11	108223528	108229364	ATM|ENST00000526567.5	+	108223528,108227594,108227775,108229177	108223686,108227696,108227888,108229364	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	174874418	174874441	174874418	+	High_confidence	7	11	36	0.828894	4.947703	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	113759857	113759899	113759898	-	High_confidence	8	10	37	0.851918	4.536286	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.513514
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	35432499	35432500	35432499	-	High_confidence	6	6	8	0.184199	2.521641	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	205422055	205422056	205422055	-	High_confidence	6	6	9	0.207223	2.725481	chr1	205421923	205422209	DNA|DNA|UCON78	-	chr1	205381377	205422054	LEMD1|ENST00000367153.8	-	205381377,205384287,205416231,205419229,205420454,205421989	205381856,205384364,205416296,205419352,205420574,205422054	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	107580245	107580267	107580245	+	High_confidence	1398	1403	6629	152.631552	7.162141	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.950219
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	69080867	69080875	69080874	+	High_confidence	3	3	7	0.161174	2.584963	chr15	69080204	69081232	LINE|L1|L1M7	-	chr15	69080861	69095807	EWSAT1|ENST00000440444.1	+	69080861,69090914,69091691,69094700	69081376,69091114,69092367,69095807	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	47658609	47658635	47658609	-	High_confidence	9	9	45	1.036117	2.684234	chrX	47658369	47658606	SINE|MIR|MIR	-	chrX	47651800	47659107	UXT|ENST00000485641.5	-	47651800,47652080,47657182,47657781,47658829	47651895,47652144,47657290,47657863,47659107	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	38625543	38625569	38625543	-	RAMPAGE_only	13	13	38	0.874943	4.070167	chr13	38625340	38625708	LINE|L1|L1MA8	+	chr13	38531999	38686675	LINC00437|NR_126377.1	-	38531999,38683686,38686438	38534020,38683787,38686675	0.842105
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	103685585	103685592	103685585	-	RAMPAGE_only	2	2	11	0.253273	3.321928	chrX	103685462	103685634	LINE|L1|L1MC5	-	chrX	103675504	103686668	MORF4L2|ENST00000441076.6	-	103675504,103678498,103685170,103686630	103677051,103678651,103685260,103686668	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	130693246	130693336	130693335	+	High_confidence	13	14	56	1.289390	4.604068	chr2	130693150	130693434	SINE|Alu|AluY	+	chr2	130693281	130696388	FAR2P3|ENST00000434289.1	+	130693281,130696341	130693796,130696388	0.946429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	28570635	28570638	28570637	+	RAMPAGE_only	6	10	13	0.299323	2.617492	chr8	28570345	28570650	SINE|Alu|AluY	+	chr8	28494255	28574268	FZD3|ENST00000240093.7	+	28494255,28499932,28502669,28520637,28527146,28551602,28555737,28562797	28494343,28499978,28503202,28520834,28528164,28551751,28555971,28574268	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	112275849	112275863	112275849	-	RAMPAGE_only	2	2	10	0.230248	2.725481	chr9	112275710	112275819	LINE|L1|L1ME4a	-	chr9	112217714	112333026	PTBP3|NM_001244898.1	-	112217714,112224132,112227410,112228379,112231379,112232098,112234819,112250928,112252677,112262434,112268048,112275843,112297840,112332783	112223983,112224210,112227627,112228472,112231413,112232238,112234897,112251103,112252788,112262599,112268195,112276013,112297916,112333026	0.700000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	88611733	88611754	88611735	-	High_confidence	75	95	341	7.851465	7.204158	chr5	88611584	88611790	LINE|L1|L1MDa	+	chr5	88540510	88611776	LINC00461|ENST00000506664.5	-	88540510,88542034,88611663	88541123,88542070,88611776	0.504399
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	154327167	154327184	154327183	+	High_confidence	3	5	7	0.161174	2.521641	chrX	154327074	154327312	SINE|MIR|MIRb	+	chrX	154327375	154329688	TKTL1|ENST00000463884.1	+	154327375,154327590,154327838,154329515	154327426,154327687,154327958,154329688	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	88418938	88418940	88418938	+	RAMPAGE_only	4	8	8	0.184199	3.000000	chr9	88418784	88418941	SINE|MIR|MIR	+	chr9	88389370	88468477	SPIN1|ENST00000483785.1	+	88389370,88426381,88448940,88462495,88468371	88389410,88426591,88448989,88462749,88468477	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	46375584	46375601	46375584	+	High_confidence	4	5	12	0.276298	2.913977	chr11	46375632	46375749	SINE|MIR|MIRb	+	chr11	46375023	46377350	DGKZ|ENST00000529698.1	+	46375023,46375431,46375850,46376065,46376327,46376523,46377072	46375045,46375631,46375951,46376145,46376397,46376564,46377350	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	63746947	63746956	63746947	-	RAMPAGE_only	2	2	7	0.161174	2.584963	chr15	63746812	63746905	LINE|L2|L2c	-	chr15	63608617	63833888	HERC1|ENST00000443617.6	-	63608617,63612250,63615767,63616429,63622814,63623724,63624157,63625984,63628676,63630465,63632708,63633847,63634732,63635960,63637504,63638410,63638710,63640151,63641469,63642956,63643403,63644991,63645482,63648068,63649724,63651252,63652413,63654118,63655741,63656087,63658543,63659735,63660972,63661752,63662983,63664469,63665918,63666355,63669537,63672495,63674341,63677844,63680076,63680536,63686358,63689588,63690540,63692410,63693963,63694311,63694773,63696123,63698727,63706779,63712774,63713352,63716301,63718573,63718782,63723181,63725291,63727646,63729235,63729496,63732923,63734723,63746917,63747723,63749366,63749646,63752957,63754504,63755228,63756436,63758174,63764095,63774693,63833826	63609266,63612556,63615920,63616682,63622891,63623890,63624327,63626154,63628815,63630635,63632811,63633970,63634888,63636142,63637643,63638536,63638776,63640445,63641643,63643058,63643550,63645097,63645682,63648199,63649925,63651380,63652541,63654324,63655955,63656358,63658718,63659936,63661025,63662021,63663204,63664594,63666150,63666472,63669698,63672694,63675117,63678365,63680160,63680776,63686535,63689699,63690647,63692566,63694157,63694549,63694894,63696339,63698996,63706831,63712895,63713665,63716473,63718694,63718897,63723355,63725513,63727838,63729368,63729649,63733145,63734849,63747083,63747858,63749538,63749791,63753085,63754648,63755325,63756748,63758369,63764191,63775649,63833888	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	130428089	130428103	130428089	-	High_confidence	2	2	9	0.207223	2.503258	chr2	130428080	130428364	SINE|Alu|AluY	-	chr2	130426191	130428176	FAR2P2|ENST00000415406.1	-	130426191,130427703	130426263,130428176	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	23911336	23911344	23911343	-	High_confidence	4	5	9	0.207223	2.750000	chr3	23911171	23911473	SINE|Alu|AluSx	+	chr3	23892082	23910925	NKIRAS1|ENST00000614374.4	-	23892082,23900807,23910810	23893337,23901049,23910925	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	100453328	100453329	100453328	+	RAMPAGE_only	8	9	9	0.207223	3.000000	chr12	100453230	100453657	LTR|ERVL-MaLR|MLT1J	-	chr12	100473707	100564413	NR1H4|ENST00000548884.5	+	100473707,100492502,100493269,100510777,100532457,100534889,100536511,100536947,100540671,100561884,100563250	100474059,100492637,100493402,100511143,100532598,100535023,100536610,100537047,100540818,100561998,100564413	0.555556
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	57279864	57279865	57279864	+	High_confidence	5	5	8	0.184199	2.807355	chr19	57279571	57279886	LINE|L2|L2a	+	chr19	57280050	57292534	ZNF460|ENST00000537645.5	+	57280050,57284550,57290698	57280124,57284677,57292534	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	28613628	28613646	28613628	-	High_confidence	5	5	14	0.322348	3.085055	chr14	28613407	28613767	LTR|ERVL-MaLR|MLT1I	-	chr14	28592222	28613623	LINC02300|ENST00000549742.1	-	28592222,28612321,28613458	28592565,28612478,28613623	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	41871694	41871755	41871745	-	RAMPAGE_only	6	6	28	0.644695	4.351823	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.535714
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	167453173	167453175	167453174	-	RAMPAGE_only	262	346	439	10.107897	7.023216	chr1	167453164	167453402	SINE|MIR|MIRc	-	chr1	167431172	167439640	CD247|ENST00000470379.1	-	167431172,167433023,167434019,167435398,167438569,167439343	167431746,167433059,167434076,167435431,167438650,167439640	0.886105
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	128740798	128740852	128740798	-	RAMPAGE_only	2	2	12	0.276298	2.845351	chr9	128740596	128740754	LINE|RTE-X|L4_C_Mam	-	chr9	128729785	128771893	ZER1|ENST00000291900.6	-	128729785,128733425,128735333,128739930,128740771,128741534,128741799,128742529,128750615,128751121,128751412,128752672,128753163,128753808,128755407,128771580	128731394,128733528,128735431,128740119,128740887,128741654,128741841,128742745,128750789,128751268,128751527,128752849,128753600,128753959,128755659,128771893	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	92847184	92847201	92847195	-	RAMPAGE_only	4	7	13	0.299323	2.918296	chr1	92847043	92847171	LINE|L1|L1ME4c	-	chr1	92842159	92877150	FAM69A|ENST00000613047.4	-	92842159,92847182,92850847,92876295,92876960	92844195,92847359,92850955,92876430,92877150	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	78055134	78055146	78055145	+	High_confidence	10	13	32	0.736794	4.663910	chr13	78055000	78055239	LTR|ERV1|LTR12C	-	chr13	78054996	78605557	RNF219-AS1|ENST00000606376.5	+	78054996,78274252,78363571,78605300	78055064,78274337,78363731,78605557	0.531250
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	37298760	37298761	37298760	+	RAMPAGE_only	30	30	30	0.690745	4.481728	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	128185577	128185578	128185577	-	RAMPAGE_only	8	9	11	0.253273	3.321928	chr9	128185400	128185541	SINE|MIR|MIR3	-	chr9	128166151	128190710	CIZ1|ENST00000415526.5	-	128166151,128166758,128167094,128169051,128169405,128170019,128176350,128177565,128178368,128178708,128180414,128180720,128185546,128190328,128190687	128166406,128166880,128167164,128169201,128169519,128170107,128176475,128177763,128178490,128179415,128180523,128180799,128185776,128190444,128190710	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	81441239	81441513	81441371	-	RAMPAGE_only	11	11	140	3.223475	5.402807	chr8	81440801	81441520	LINE|L1|L1MC4	-	chr8	81440325	81447484	PMP2|NM_002677.3	-	81440325,81444499,81444816,81447313	81443448,81444601,81444989,81447484	0.992857
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	571754	571765	571754	-	High_confidence	5	6	12	0.276298	3.022055	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	75523602	75523652	75523625	-	High_confidence	7	7	25	0.575621	3.886842	chrX	75523580	75523687	LINE|CR1|L3	-	chrX	75368426	75523502	ZDHHC15|NM_001146256.1	-	75368426,75379119,75417086,75421863,75424651,75429077,75429947,75431450,75450801,75478890,75522888	75372945,75379198,75417190,75421990,75424784,75429198,75429980,75431520,75450922,75478985,75523502	0.960000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	26914558	26914561	26914558	-	RAMPAGE_only	2	2	7	0.161174	2.584963	chr12	26914520	26914587	LINE|RTE-BovB|MamRTE1	+	chr12	26905180	26917734	INTS13|ENST00000538155.5	-	26905180,26906301,26911177,26913456,26913973,26916001,26917351,26917643	26905536,26906437,26911317,26913687,26914128,26916180,26917441,26917734	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	134485387	134485490	134485443	-	High_confidence	58	64	494	11.374263	6.687859	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.965587
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	109383431	109383504	109383459	-	High_confidence	9	9	96	2.210383	5.540139	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.958333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	41420023	41420057	41420056	+	High_confidence	4	4	15	0.345372	3.640224	chr21	41420051	41420187	DNA|hAT-Charlie|MER5A1	-	chr21	41420303	41427866	MX1|ENST00000490220.5	+	41420303,41421837,41422755,41427205,41427754	41420440,41422095,41422911,41427304,41427866	0.600000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	29647522	29647554	29647553	+	High_confidence	3	3	9	0.207223	2.750000	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	33600213	33600216	33600213	-	High_confidence	3	3	8	0.184199	2.750000	chr8	33600197	33600426	SINE|MIR|MIR	-	chr8	33591329	33600106	DUSP26|NM_024025.2	-	33591329,33593532,33597294,33599664	33592212,33593747,33597591,33600106	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	32641904	32641957	32641908	-	High_confidence	6	6	37	0.851918	3.166988	chr21	32641733	32641912	SINE|MIR|MIR3	-	chr21	32631777	32641945	SYNJ1|ENST00000418301.3	-	32631777,32634860,32638907,32639670,32641895	32631801,32634881,32639125,32639779,32641945	0.837838
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	80847029	80847102	80847036	-	RAMPAGE_only	7	10	47	1.082167	4.764814	chr14	80847034	80847103	LINE|CR1|L3	+	chr14	80830164	80904928	CEP128|ENST00000554827.5	-	80830164,80836204,80838203,80840681,80862756,80895717,80899937,80904812	80831294,80836337,80838278,80840768,80862873,80895790,80900029,80904928	0.936170
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	112999664	112999705	112999664	-	High_confidence	6	6	15	0.345372	2.950212	chr9	112999325	112999997	LTR|ERVL|MER21C	-	chr9	112957742	112999091	ZNF883|ENST00000639709.1	-	112957742,112959125,112959349,112959792,112966649,112968821,112969339,112998120	112958036,112959171,112959451,112959903,112966740,112968941,112969380,112999091	0.933333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	27613327	27613362	27613338	+	High_confidence	8	9	29	0.667720	4.208410	chr14	27612881	27613894	LTR|ERV1|MER4B-int	+	chr14	27612610	27639636	LINC00645|ENST00000557399.1	+	27612610,27613420,27619822,27634243,27636419	27612677,27613496,27619873,27634344,27639636	0.862069
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	10235079	10235275	10235205	+	RAMPAGE_only	20	24	128	2.947177	4.517867	chrX	10235000	10235355	LTR|ERVL-MaLR|MLT1J	-	chrX	10156983	10237660	CLCN4|ENST00000380833.8	+	10156983,10158288,10185021,10187514,10194910,10197938,10206357,10206695,10208044,10212466,10213680,10220660,10233493	10157100,10158551,10185176,10187614,10195098,10198061,10206564,10206776,10208590,10212653,10214079,10220877,10237660	0.992188
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	56833685	56833700	56833699	-	High_confidence	3	3	10	0.230248	3.121928	chr19	56833578	56833676	DNA|hAT-Charlie|MER5A	-	chr19	56814387	56833747	PEG3|ENST00000647852.1	-	56814387,56817745,56818599,56821650,56822752,56823589,56824261,56826387,56827133,56833289,56833642	56817579,56817838,56818702,56821754,56822836,56823679,56824427,56826463,56827246,56833420,56833747	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	24011756	24011757	24011756	+	High_confidence	7	7	7	0.161174	2.521641	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	116277780	116277854	116277853	-	RAMPAGE_only	24	39	96	2.210383	4.148932	chr6	116277660	116277934	SINE|Alu|AluSg	+	chr6	116276577	116279903	TSPYL1|ENST00000368608.3	-	116276577	116279903	0.979167
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	59619874	59619923	59619894	+	High_confidence	3012	3530	12865	296.214348	5.753053	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.970229
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	32901901	32901919	32901901	+	RAMPAGE_only	2	2	9	0.207223	2.503258	chr6	32901520	32901996	LINE|L1|L1MC2	+	chr6	32894739	32907405	MSTRG.21145.1	+	32894739,32900919	32894927,32907405	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	108563326	108563366	108563365	-	RAMPAGE_only	3	3	10	0.230248	2.646439	chr7	108563255	108563567	SINE|Alu|AluSx	+	chr7	108562143	108569453	THAP5|NM_182529.3	-	108562143,108565829,108569098	108565105,108566022,108569453	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	18137181	18137233	18137227	+	High_confidence	9	9	49	1.128216	4.833798	chr20	18137136	18137292	SINE|Alu|AluSz	+	chr20	18137854	18143169	PET117|NM_001164811.1	+	18137854,18142207	18138051,18143169	0.959184
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	38354262	38354278	38354262	+	RAMPAGE_only	3	3	11	0.253273	2.921928	chr13	38354306	38354393	LINE|L1|L1M5	+	chr13	38349880	38363619	UFM1|ENST00000239878.8	+	38349880,38349998,38354238,38358092,38359300,38360710	38349921,38350055,38354296,38358132,38359333,38363619	0.727273
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	138646811	138646852	138646827	-	RAMPAGE_only	6	7	27	0.621670	4.363713	chr6	138646689	138646819	LINE|L2|L2a	-	chr6	138447064	138692571	NHSL1|ENST00000491526.6	-	138447064,138473305,138496218,138692475	138447193,138473433,138496371,138692571	0.925926
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	39681948	39682022	39681996	-	RAMPAGE_only	106	106	273	6.285777	5.845380	chr1	39681933	39682041	LINE|L2|L2c	+	chr1	39678647	39691485	HPCAL4|ENST00000617690.2	-	39678647,39683936,39684441,39691064,39691305	39682733,39684152,39684611,39691170,39691485	0.992674
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	168550018	168550074	168550073	-	RAMPAGE_only	5	5	21	0.483521	4.297079	chr5	168550033	168550400	DNA|TcMar-Tigger|MER47A	+	chr5	168548494	168579600	PANK3|ENST00000239231.6	-	168548494,168559031,168561392,168563888,168566012,168568645,168579255	168557621,168559157,168561516,168564065,168566266,168568998,168579600	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	104254172	104254173	104254172	+	High_confidence	16	16	20	0.460496	4.142664	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254163	104266190	GSTO1|ENST00000493946.1	+	104254163,104255162,104259575,104262978,104266083	104254499,104255271,104259798,104263077,104266190	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	126391373	126391397	126391396	+	RAMPAGE_only	3	4	10	0.230248	2.846439	chr9	126390969	126391719	LINE|L1|L1MC5a	+	chr9	126395639	126448409	MVB12B|ENST00000470567.5	+	126395639,126421853,126448141	126395697,126421948,126448409	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	26505734	26505745	26505742	-	RAMPAGE_only	15	15	36	0.828894	4.829966	chr8	26505710	26505993	SINE|Alu|AluSx1	+	chr8	26504679	26513967	PNMA2|NM_007257.5	-	26504679,26509547,26513815	26509243,26509677,26513967	0.944444
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	52661530	52661531	52661530	+	RAMPAGE_only	6	8	8	0.184199	2.750000	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	10681318	10681329	10681328	+	RAMPAGE_only	4	4	8	0.184199	3.000000	chr19	10681334	10681610	SINE|Alu|AluJb	+	chr19	10654303	10689847	ILF3|ENST00000587928.5	+	10654303,10670515,10670973,10671357,10677162,10678612,10679096,10679815,10680345,10681018,10681218,10682536,10683124,10683365,10683635,10683916,10684415,10687345,10688549,10689178	10654487,10670608,10671203,10671535,10677310,10678704,10679192,10679927,10680443,10681130,10682192,10682704,10683262,10683542,10683789,10683970,10684476,10687708,10688678,10689847	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	59234313	59234326	59234325	+	RAMPAGE_only	10	10	24	0.552596	3.688722	chr17	59234099	59234367	SINE|Alu|AluY	+	chr17	59220561	59273021	GDPD1|ENST00000581276.5	+	59220561,59234491,59245413,59248739,59257121,59257750,59267040,59270935,59272784	59220751,59234534,59245549,59248785,59257240,59257840,59267174,59270995,59273021	0.791667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	182738440	182738446	182738445	+	RAMPAGE_only	6	11	20	0.460496	3.681881	chr4	182738424	182738481	SINE|tRNA|LFSINE_Vert	+	chr4	182680323	182755353	TENM3|ENST00000502950.1	+	182680323,182680542,182681813,182688165,182714086,182728964,182730199,182730877,182736807,182738400,182743169,182744142,182751799,182753449,182754384	182680349,182680737,182682014,182688351,182714233,182729181,182730319,182731139,182737075,182738544,182743419,182744163,182752032,182753604,182755353	0.950000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	82031625	82031635	82031634	+	RAMPAGE_only	6	6	12	0.276298	3.277613	chr5	82031270	82032036	LTR|ERVL|LTR101_Mam	+	chr5	81987557	82252713	ATG10|ENST00000513634.1	+	81987557,82058494,82164398,82178489,82252561	81987678,82058602,82164537,82178587,82252713	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	212429184	212429219	212429218	-	High_confidence	7	7	19	0.437472	3.725481	chr2	212428936	212429403	LTR|ERVL|LTR33	-	chr2	211750698	212429247	ERBB4|ENST00000435846.1	-	211750698,211788024,211947429,212124751,212429158	211750704,211788159,211947616,212124903,212429247	0.736842
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	63809263	63809265	63809264	-	High_confidence	4	7	9	0.207223	3.000000	chrX	63809146	63809232	SINE|MIR|MIR1_Amn	-	chrX	63678495	63809274	ARHGEF9|ENST00000623417.3	-	63678495,63697124,63706257,63795515,63809202	63678572,63697304,63706449,63795576,63809274	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	48352334	48352336	48352334	+	RAMPAGE_only	9	12	16	0.368397	3.373557	chr16	48352363	48352642	SINE|Alu|AluSz6	+	chr16	48244295	48357349	LONP2|ENST00000285737.8	+	48244295,48252130,48256609,48258617,48261423,48262777,48270015,48277337,48296014,48299661,48303171,48334215,48347506,48348099,48351580	48244621,48252365,48256741,48258740,48261587,48262872,48270274,48277479,48296165,48299788,48303305,48334358,48347714,48348290,48357349	0.937500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	69314796	69314839	69314820	-	High_confidence	3	3	20	0.460496	4.142664	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	32927967	32927984	32927967	+	RAMPAGE_only	214	214	727	16.739046	6.637933	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.914718
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	215383357	215383364	215383357	-	High_confidence	4	4	12	0.276298	3.251629	chr2	215383001	215383307	SINE|Alu|AluSz	-	chr2	215379204	215383483	FN1|ENST00000490833.5	-	215379204,215380810,215382002,215382211,215383327	215379317,215381080,215382048,215382325,215383483	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	86453139	86453166	86453139	-	High_confidence	3	3	10	0.230248	3.321928	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016477	86453138	MAPK10|ENST00000641435.1	-	86016477,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86103185,86107222,86159297,86194318,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453138	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	6853884	6853906	6853886	+	High_confidence	6	8	25	0.575621	4.323856	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853860	6902192	ALOX12P2|ENST00000574727.5	+	6853860,6854213,6892002,6894317,6894883,6895095,6895342,6896315,6896553,6898528,6898799,6899390,6899592,6899867	6854060,6854435,6892075,6894513,6895006,6895199,6895503,6896459,6896763,6898698,6898929,6899490,6899760,6902192	0.920000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	53495164	53495187	53495164	+	High_confidence	1	1	9	0.207223	3.000000	chr3	53495032	53495170	LINE|L2|L2a	+	chr3	53495166	53811406	CACNA1D|ENST00000422281.6	+	53495166,53497151,53501614,53650778,53660132,53665659,53666338,53673022,53702640,53718300,53719754,53722313,53723433,53723791,53726878,53730441,53731076,53732015,53732814,53735373,53740279,53743010,53744739,53745623,53745822,53747301,53749267,53751748,53753571,53761997,53770423,53772832,53774586,53775885,53776602,53776859,53780025,53781565,53786821,53800248,53801057,53803422,53804982,53808648,53809977,53811112	53495233,53497461,53501720,53650918,53660275,53665812,53666535,53673126,53702810,53718388,53719781,53722474,53723659,53723999,53726999,53730556,53731146,53732082,53732962,53735503,53740339,53743117,53744827,53745731,53745875,53747448,53749469,53751907,53753682,53762081,53770552,53772898,53774678,53776045,53776730,53776956,53780128,53781667,53786952,53800365,53801425,53803572,53805146,53808770,53810298,53811406	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	12522775	12522821	12522810	+	RAMPAGE_only	44	44	223	5.134536	5.513366	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.798206
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	40464224	40464242	40464224	+	RAMPAGE_only	11	12	18	0.414447	3.690117	chr3	40463973	40464259	SINE|Alu|AluSx	-	chr3	40457291	40468587	RPL14|ENST00000338970.10	+	40457291,40457889,40458641,40461406,40461607,40461938	40457363,40457991,40458736,40461506,40461661,40468587	0.944444
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	66408519	66408531	66408519	+	High_confidence	8	8	13	0.299323	3.251629	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.769231
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	66729229	66729344	66729279	-	High_confidence	125	137	1165	26.823919	6.161428	chr11	66729233	66729349	SINE|MIR|MIRb	-	chr11	66715353	66729226	SPTBN2|ENST00000527010.1	-	66715353,66715829,66721083,66728740	66715395,66715981,66721262,66729226	0.994850
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100829523	100829634	100829629	+	High_confidence	38	38	214	4.927312	6.677449	chr14	100829596	100829639	LINE|L2|L2b	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.766355
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	283480	283509	283506	+	High_confidence	6	10	21	0.483521	3.820889	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.904762
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	44887690	44887729	44887690	+	RAMPAGE_only	4	5	21	0.483521	4.106603	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885739	44901833	YWHAB|ENST00000428262.1	+	44885739,44887544,44901530	44885886,44887742,44901833	0.523810
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	73787447	73787524	73787469	+	High_confidence	5	5	44	1.013092	4.606937	chr11	73787272	73787558	SINE|Alu|AluSx1	+	chr11	73787315	73864611	MRPL48|ENST00000310614.11	+	73787315,73805026,73808312,73825707,73844806,73859906,73863171,73864295	73787992,73805079,73808350,73825796,73844976,73860009,73863261,73864611	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	32537176	32537247	32537176	-	High_confidence	8	8	37	0.851918	3.841097	chr20	32537119	32537267	SINE|MIR|MIRb	-	chr20	32464779	32536397	NOL4L|ENST00000375678.7	-	32464779,32474600,32511346,32520810,32527757,32532316,32533375,32535440	32465134,32474742,32511456,32520922,32527913,32532416,32533485,32536397	0.972973
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	61812319	61812321	61812319	-	RAMPAGE_only	30	46	64	1.473589	5.400554	chr18	61812140	61812347	DNA|hAT-Charlie|MER3	-	chr18	61808062	61893759	RNF152|ENST00000312828.3	-	61808062,61892794	61816598,61893759	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	47427367	47427384	47427375	-	RAMPAGE_only	2	2	7	0.161174	2.584963	chr19	47427348	47427570	LTR|ERVL|LTR33	+	chr19	47403117	47419528	MEIS3|NM_001009813.2	-	47403117,47406459,47406887,47407078,47407351,47409098,47409435,47414716,47415050,47416651,47416803,47417177,47419069	47403553,47406526,47406971,47407137,47407428,47409247,47409547,47414815,47415101,47416702,47416963,47417350,47419528	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	33021373	33021382	33021381	-	RAMPAGE_only	3	3	12	0.276298	2.845351	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	52955040	52955041	52955040	+	RAMPAGE_only	28	28	28	0.644695	3.583617	chr6	52955078	52955376	SINE|Alu|AluSz6	+	chr6	52995619	52995950	RF00100|ENST00000365328.1	+	52995619	52995950	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	5953200	5953220	5953219	+	RAMPAGE_only	6	6	11	0.253273	3.121928	chr20	5953132	5953291	LTR|ERVL|LTR33A	-	chr20	5950930	5995206	MCM8|ENST00000265187.4	+	5950930,5952010,5952423,5954607,5955101,5957125,5958527,5963273,5967435,5967877,5972006,5973055,5977875,5982969,5984780,5985921,5987281,5993505,5994298	5951077,5952163,5952528,5954690,5955251,5957229,5958726,5963359,5967587,5968025,5972037,5973196,5978017,5983165,5985000,5986131,5987358,5993695,5995206	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	12635947	12635949	12635948	+	RAMPAGE_only	6	9	12	0.276298	3.277613	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	3062782	3062831	3062803	-	High_confidence	29	29	254	5.848305	6.741651	chr19	3062800	3062899	SINE|MIR|MIRc	+	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.972441
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	43027196	43027218	43027206	+	RAMPAGE_only	2	2	8	0.184199	2.521641	chr17	43027173	43027300	LINE|CR1|X6A_LINE	-	chr17	43025240	43032041	RND2|NM_005440.4	+	43025240,43025959,43027182,43028060,43028431	43025449,43026047,43027292,43028195,43032041	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	6208681	6208682	6208681	-	High_confidence	81	82	84	1.934085	3.677607	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.964286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	104763726	104763757	104763755	+	High_confidence	20	27	116	2.670879	5.463477	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	0.974138
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	15738511	15738512	15738511	+	High_confidence	525	530	530	12.203156	4.785723	chr3	15738158	15739435	LTR|ERVK|MER11B	-	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.998113
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	180886884	180886945	180886904	+	RAMPAGE_only	4	5	20	0.460496	3.484184	chr1	180886892	180887197	SINE|Alu|AluSg	+	chr1	180632009	180890279	XPR1|NM_001135669.1	+	180632009,180682359,180787752,180803387,180806061,180806473,180811406,180824752,180825164,180834873,180863707,180873802,180880075,180884005	180632270,180682411,180787854,180803611,180806211,180806557,180811488,180824943,180825344,180835045,180863874,180873942,180880297,180890279	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	11193306	11193349	11193340	+	High_confidence	4	4	19	0.437472	3.350209	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.736842
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	117455153	117455171	117455153	+	High_confidence	5	5	10	0.230248	3.121928	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.700000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	183452327	183452328	183452327	+	RAMPAGE_only	5	5	7	0.161174	2.521641	chr3	183452059	183452354	SINE|Alu|AluSz6	-	chr3	183453642	183455541	LINC00888|ENST00000482098.1	+	183453642,183455198	183454093,183455541	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	15526471	15526479	15526471	-	High_confidence	2	3	8	0.184199	2.500000	chr1	15526347	15526477	SINE|MIR|MIR3	+	chr1	15518135	15526534	CASP9|ENST00000469637.1	-	15518135,15519880,15526190	15518395,15520001,15526534	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	46243225	46243277	46243267	-	RAMPAGE_only	4	5	41	0.944018	4.521829	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.926829
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	6913805	6913850	6913849	+	High_confidence	3	3	17	0.391422	3.572469	chr12	6913590	6913862	SINE|Alu|AluSc8	-	chr12	6913101	6914228	LRRC23|ENST00000472633.1	+	6913101,6913890	6913237,6914228	0.882353
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100834645	100834724	100834723	+	RAMPAGE_only	21	21	59	1.358465	4.827387	chr14	100834648	100834738	LINE|L2|L2b	+	chr14	100833277	100847301	MEG3|ENST00000455531.1	+	100833277,100845457	100836300,100847301	0.813559
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	187995770	187995810	187995770	+	High_confidence	8	10	25	0.575621	3.703465	chr4	187995806	187995869	DNA|hAT-Charlie|MER112	+	chr4	187995770	188005050	ZFP42|NM_174900.4	+	187995770,187999107,187999608,188002712	187995840,187999273,187999685,188005050	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	33068824	33068896	33068848	-	RAMPAGE_only	3	7	45	1.036117	3.973992	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	97241155	97241176	97241155	+	RAMPAGE_only	2	2	9	0.207223	2.500000	chr2	97241018	97241180	LINE|L2|L2c	+	chr2	97212726	97249050	ANKRD36|ENST00000421946.2	+	97212726,97213541,97215300,97215424,97217176,97217299,97219049,97219173,97224808,97233729,97241265,97243845,97245156,97247475	97213447,97213614,97215329,97215497,97217205,97217372,97219078,97219246,97224879,97233871,97241479,97244029,97246071,97249050	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	63618045	63618046	63618045	-	High_confidence	11	15	16	0.368397	3.456565	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	147660702	147660705	147660704	+	RAMPAGE_only	7	12	12	0.276298	3.022055	chr6	147660510	147660901	LTR|ERVL-MaLR|MSTA	+	chr6	148272303	148440694	SASH1|ENST00000367469.5	+	148272303,148390133,148440183,148440357	148272377,148390262,148440234,148440694	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	3380960	3380961	3380960	+	High_confidence	32	33	33	0.759819	4.536670	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	216215821	216215824	216215821	+	RAMPAGE_only	21	21	48	1.105192	4.263716	chr2	216215054	216216151	LTR|ERVL|LTR57-int	-	chr2	216109296	216220192	MSTRG.15153.2	+	216109296,216113015,216116658,216117745,216119042,216122061,216125916,216127535,216130874,216132324,216137087,216138088,216141185,216148082,216160067,216161978,216190224,216192638,216194918,216204321,216205187,216217714	216109457,216113129,216116842,216117794,216119165,216122253,216126031,216127674,216130987,216132387,216137225,216138179,216141319,216148276,216160161,216162048,216190334,216192735,216194986,216204396,216217322,216220192	0.979167
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	22007517	22007529	22007528	+	High_confidence	3	3	7	0.161174	2.584963	chr16	22006872	22007647	LINE|L2|L2a	+	chr16	22008134	22084654	C16orf52|NM_001164579.1	+	22008134,22075486,22080695	22008407,22075699,22084654	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	115144900	115144901	115144900	-	RAMPAGE_only	6	8	9	0.207223	3.000000	chr2	115144845	115145008	LINE|L1|L1MEa	-	chr2	115144047	115161343	DPP10-AS1|NR_036580.1	-	115144047,115144858,115161103	115144368,115145027,115161343	0.555556
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	123690007	123690057	123690024	+	RAMPAGE_only	6	6	17	0.391422	3.337175	chr10	123689893	123690080	DNA|hAT-Blackjack|MER63A	+	chr10	123666354	123697399	GPR26|NM_153442.3	+	123666354,123674817,123687928	123667075,123674931,123697399	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	77491364	77491382	77491366	-	High_confidence	10	14	29	0.667720	3.948859	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77453865	77491285	WDR41|ENST00000504895.5	-	77453865,77459061,77463094,77464760,77489456,77491192	77453928,77459124,77463226,77464809,77489572,77491285	0.862069
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	24983353	24983366	24983365	+	RAMPAGE_only	8	13	23	0.529571	3.606937	chr15	24983127	24983421	SINE|Alu|AluSx1	+	chr15	24981993	25000276	MSTRG.7932.21	+	24981993,24998969,25000244	24998486,24999078,25000276	0.956522
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	236835	236838	236835	-	High_confidence	6	6	11	0.253273	3.277613	chr11	236640	236796	SINE|MIR|MIRb	-	chr11	216610	236834	SIRT3|ENST00000529382.5	-	216610,218831,224077,230451,232982,233342,236615	216718,219041,224239,230552,233215,233534,236834	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	155478037	155478044	155478043	-	RAMPAGE_only	6	6	14	0.322348	3.664498	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	27367612	27367613	27367612	-	RAMPAGE_only	16	16	22	0.506546	3.606937	chr6	27367435	27367797	LTR|ERVL-MaLR|MSTA	-	chr6	27357822	27371525	ZNF204P|NR_002722.2	-	27357822,27363178,27367516,27370135	27360221,27363302,27367612,27371525	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	27983009	27983078	27983009	-	High_confidence	32	39	86	1.980135	5.467754	chr10	27982876	27983540	LTR|ERVL|LTR50	+	chr10	27812163	27983106	ARMC4|NM_001312689.1	-	27812163,27860624,27862433,27907662,27935009,27936725,27939896,27940562,27944221,27944815,27961567,27968922,27971107,27981465,27982928	27812625,27860846,27862622,27907777,27935252,27936880,27940007,27940805,27944431,27944962,27961715,27969018,27971313,27981582,27983106	0.965116
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	111126403	111126450	111126403	+	RAMPAGE_only	2	2	16	0.368397	3.506891	chrX	111126193	111126441	DNA|TcMar-Tigger|Tigger20a	+	chrX	111096141	111129205	PAK3|NR_136740.1	+	111096141,111097574,111123076	111096415,111097684,111129205	0.937500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	149911800	149911807	149911804	-	RAMPAGE_only	2	2	8	0.184199	2.521641	chr1	149911671	149911783	LINE|L2|L2b	-	chr1	149905471	149917841	SV2A|ENST00000369145.1	-	149905471,149906649,149907699,149908041,149909191,149909460,149909800,149910569,149910825,149911799,149913218,149917738	149906039,149906856,149907833,149908206,149909280,149909571,149909890,149910703,149910977,149911980,149914187,149917841	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	149608306	149608318	149608306	-	RAMPAGE_only	5	6	11	0.253273	3.121928	chr6	149608148	149609381	LINE|L1|L1MA5	+	chr6	149598052	149603373	KATNA1|ENST00000481905.5	-	149598052,149601593,149603267	149598350,149601752,149603373	0.727273
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31117692	31117767	31117757	-	High_confidence	21	23	88	2.026184	4.620615	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.931818
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	23980458	23980506	23980505	-	High_confidence	10	12	38	0.874943	3.964812	chr22	23980449	23980597	SINE|MIR|MIRc	+	chr22	23971364	23980494	MSTRG.16469.1	-	23971364,23973767,23974306,23980411	23971623,23973943,23974439,23980494	0.921053
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	112361632	112362007	112361868	+	RAMPAGE_only	59	63	512	11.788709	5.482175	chr3	112361783	112361898	SINE|MIR|MIRc	+	chr3	112333177	112362809	CD200|ENST00000478595.1	+	112333177,112344961,112347562,112349711,112361542	112333224,112345288,112347830,112349819,112362809	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	67884976	67885003	67885002	+	RAMPAGE_only	5	5	16	0.368397	3.452820	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.812500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	145815093	145815118	145815093	+	High_confidence	3	3	11	0.253273	3.121928	chr6	145815053	145815170	SINE|MIR|MIR3	-	chr6	145815297	145871493	AL356599.1|ENST00000592775.5	+	145815297,145870929	145815431,145871493	0.636364
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	11356862	11356950	11356881	+	High_confidence	11	12	81	1.865011	4.999918	chr19	11356842	11356927	SINE|MIR|MIRc	+	chr19	11357695	11359894	PLPPR2|ENST00000588196.1	+	11357695,11359531	11357739,11359894	0.740741
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	72363472	72363559	72363508	-	High_confidence	3	4	32	0.736794	4.601410	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.937500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	44662188	44662216	44662215	+	RAMPAGE_only	3	3	6	0.138149	2.584963	chr19	44661967	44662259	LTR|ERVL|MER77	-	chr19	44643913	44663583	PVR|ENST00000187830.2	+	44643913,44647299,44649808,44653899,44657761,44658741,44661291,44661739	44644175,44647570,44650105,44654017,44657910,44658900,44661323,44663583	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	159005961	159005962	159005961	+	High_confidence	8	8	11	0.253273	3.277613	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.727273
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	51401238	51401269	51401243	-	RAMPAGE_only	5	5	26	0.598645	3.269275	chr1	51401165	51401262	SINE|MIR|MIRb	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.961538
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	125874669	125874684	125874669	-	High_confidence	2	2	7	0.161174	2.521641	chr11	125874041	125875038	LTR|ERV1|HUERS-P3-int	+	chr11	125873448	125874528	AP000842.3|ENST00000569238.1	-	125873448	125874528	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	232845833	232845886	232845866	+	RAMPAGE_only	6	6	20	0.460496	3.884184	chr2	232845876	232846546	LINE|CR1|L3	+	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	74331350	74331482	74331426	-	RAMPAGE_only	14	22	108	2.486681	5.097883	chr11	74331263	74331561	SINE|Alu|AluSp	-	chr11	74330311	74398465	PGM2L1|NM_173582.4	-	74330311,74338467,74342460,74342884,74343322,74345468,74346731,74347147,74351382,74368491,74370901,74371710,74374414,74398050	74336754,74338601,74342650,74343014,74343416,74345649,74346829,74347337,74351576,74368575,74370986,74371817,74374582,74398465	0.944444
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	997318	997343	997318	-	High_confidence	5	5	18	0.414447	3.286896	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.944444
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	94234039	94234073	94234039	+	RAMPAGE_only	3	5	12	0.276298	3.277613	chr4	94234038	94234182	SINE|MIR|MIR3	-	chr4	94208083	94289899	SMARCAD1|ENST00000394961.6	+	94208083,94208345,94213034,94226118,94233953,94236951,94240905,94249653,94250751,94252615,94264706,94270727,94273616,94274737,94274889,94276338,94277021,94278421,94278615,94278922,94280591,94281471,94283120,94284959,94289472	94208242,94208584,94213152,94226296,94234122,94237018,94241006,94249755,94250833,94253007,94264906,94270818,94273716,94274797,94274965,94276474,94277159,94278517,94278733,94279050,94280780,94281590,94283303,94285069,94289899	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	131165142	131165149	131165145	+	High_confidence	5	7	13	0.299323	3.584963	chr3	131165064	131165167	LINE|L2|L2b	-	chr3	131165276	131228595	NEK11|ENST00000510823.1	+	131165276,131168829,131170772,131228527	131165519,131168937,131170887,131228595	0.615385
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	202564830	202565002	202564984	+	RAMPAGE_only	24	25	193	4.443791	5.816453	chr2	202564765	202565066	SINE|Alu|AluSc8	+	chr2	202377433	202567751	BMPR2|ENST00000374574.2	+	202377433,202464808,202467518,202513718,202514887,202518821,202520086,202530793,202532584,202542310,202552715,202559695	202377550,202464979,202467689,202513829,202514979,202519052,202520201,202530954,202532732,202542447,202552888,202567751	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	27331602	27331790	27331786	+	High_confidence	187	189	1289	29.678997	6.543474	chr22	27331341	27331854	LTR|ERVL|LTR33	-	chr22	27331786	27379265	AL020994.2|ENST00000413244.1	+	27331786,27335157,27336096,27379185	27331938,27335330,27336262,27379265	0.880528
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	39800293	39800314	39800297	-	High_confidence	7	7	30	0.690745	4.254196	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	65383614	65383616	65383614	-	RAMPAGE_only	10	16	16	0.368397	3.773557	chr3	65383574	65383652	DNA|hAT-Ac|OldhAT1	-	chr3	65375764	65380831	MAGI1|ENST00000480729.1	-	65375764,65379260,65380741	65375948,65379554,65380831	0.562500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	150069531	150069592	150069566	-	High_confidence	8	8	38	0.874943	4.681881	chr6	150069423	150069517	SINE|MIR|MIR1_Amn	-	chr6	150061045	150069147	ULBP3|NM_024518.2	-	150061045,150064584,150065397,150065898,150068978	150063351,150064713,150065673,150066162,150069147	0.973684
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	235109820	235110125	235109821	-	RAMPAGE_only	160	235	721	16.600897	5.716140	chr1	235109784	235110109	DNA|TcMar-Tigger|Tigger10	-	chr1	235109335	235128936	TOMM20|ENST00000366607.4	-	235109335,235113767,235119817,235122325,235128594	235112108,235113910,235119899,235122372,235128936	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	57451568	57451576	57451575	+	RAMPAGE_only	3	4	8	0.184199	2.521641	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	241504046	241504053	241504052	-	RAMPAGE_only	3	3	7	0.161174	2.584963	chr1	241503964	241504054	SINE|MIR|MIRc	+	chr1	241497602	241519761	FH|ENST00000366560.3	-	241497602,241500436,241502442,241504041,241506002,241508602,241511966,241513602,241517181,241519590	241497970,241500590,241502570,241504245,241506168,241508785,241512143,241513713,241517316,241519761	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	46489999	46490042	46490004	-	High_confidence	9	9	64	1.473589	5.056592	chr19	46489891	46489994	LINE|L2|L2a	-	chr19	46481084	46490120	PPP5D1|ENST00000595691.1	-	46481084,46489865	46481440,46490120	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	85750301	85750331	85750330	-	High_confidence	2	2	7	0.161174	2.584963	chr15	85750035	85750376	SINE|Alu|AluSz	+	chr15	85744108	85750281	AC021739.2|ENST00000558375.1	-	85744108,85748907,85750241	85744814,85749125,85750281	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	71463091	71463107	71463091	-	High_confidence	2	2	8	0.184199	2.521641	chr16	71462483	71463159	DNA|hAT-Charlie|MER20B	-	chr16	71447596	71462759	ZNF23|ENST00000357254.8	-	71447596,71453242,71454041,71456763,71462209	71449882,71453350,71454218,71456828,71462759	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	20658568	20658598	20658568	+	High_confidence	9	9	49	1.128216	3.979748	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658311	20865967	MSTRG.24507.4	+	20658311,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20820323,20820940,20822988,20862577,20865925	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20820425,20821071,20823115,20862712,20865967	0.612245
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	163429980	163430007	163429980	+	RAMPAGE_only	6	6	12	0.276298	3.251629	chr6	163429946	163430100	LINE|L2|L2b	-	chr6	163423133	163563454	QKI|ENST00000537041.5	+	163423133,163455278,163478779,163534981,163561981,163563443	163423213,163455421,163478896,163535125,163562069,163563454	0.583333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	43133126	43133162	43133126	+	High_confidence	10	11	50	1.151241	4.940841	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133161	43146521	TMEM62|ENST00000565291.5	+	43133161,43134256,43135511,43138573,43146492	43133402,43134368,43135649,43138619,43146521	0.860000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	165686784	165686929	165686921	+	RAMPAGE_only	64	68	226	5.203610	5.858351	chr2	165686895	165687018	LINE|CR1|Plat_L3	-	chr2	165572338	165689407	CSRNP3|ENST00000342316.8	+	165572338,165595042,165657760,165676311,165678700	165572587,165595213,165658020,165676608,165689407	0.995575
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	140700445	140700455	140700445	+	High_confidence	1823	2685	6008	138.333137	4.748279	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.980526
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	56157322	56157459	56157348	+	High_confidence	61	62	722	16.623922	5.740957	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.896122
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	74589928	74589929	74589928	-	RAMPAGE_only	5	5	7	0.161174	2.521641	chrX	74589722	74589950	SINE|tRNA-RTE|MamSINE1	+	chrX	74585216	74614617	RLIM|ENST00000332687.10	-	74585216,74594305,74595808,74614421	74593061,74594389,74596000,74614617	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	7147231	7147288	7147267	+	High_confidence	14	17	58	1.335440	5.094797	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.965517
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	51627601	51627680	51627610	-	RAMPAGE_only	7	8	57	1.312415	4.735228	chr20	51627270	51627593	LINE|L2|L2a	-	chr20	51596513	51768328	ATP9A|ENST00000311637.9	-	51596513,51604816,51607526,51608517,51610100,51613676,51617489,51618661,51618953,51622073,51625191,51627599,51628979,51639342,51656937,51669996,51671114,51674152,51676131,51712965,51725818,51729833,51768301	51601347,51605020,51607584,51608626,51610165,51613832,51617554,51618806,51619043,51622172,51625362,51627683,51629072,51639504,51657150,51670109,51671257,51674313,51676208,51713074,51725932,51729978,51768328	0.964912
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	132035993	132036024	132035996	+	RAMPAGE_only	8	15	42	0.967043	4.772186	chr10	132035997	132036125	LTR|ERVL|ERVL-E-int	+	chr10	132065966	132184809	JAKMIP3|NM_001323087.1	+	132065966,132104671,132117076,132133311,132135040,132135929,132137018,132137253,132138118,132140450,132141919,132145106,132145517,132147951,132149411,132149981,132152957,132153758,132153912,132163208,132164669,132166982,132167952,132182356	132066061,132104943,132117574,132133527,132135160,132136076,132137150,132137289,132138178,132140579,132142048,132145190,132145580,132148050,132149510,132150041,132153023,132153827,132153990,132163412,132164735,132167055,132169033,132184809	0.523810
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	96303166	96303178	96303166	-	RAMPAGE_only	8	8	21	0.483521	4.106603	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	39026029	39026064	39026029	+	High_confidence	2	2	10	0.230248	2.921928	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	62864866	62864912	62864866	-	High_confidence	3	3	14	0.322348	3.093069	chr9	62864712	62865033	LTR|ERV1|LTR8	+	chr9	62861381	62864957	ADGRF5P1|ENST00000590130.1	-	62861381,62864789	62862193,62864957	0.928571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	233357072	233357073	233357072	+	RAMPAGE_only	5	5	7	0.161174	2.521641	chr2	233356905	233357200	LTR|ERVL|LTR33A_	-	chr2	233354506	233472097	DGKD|NM_152879.2	+	233354506,233388256,233390402,233434379,233434768,233435817,233436315,233437376,233438216,233441886,233445622,233446711,233448086,233448275,233449102,233449981,233450921,233451963,233454762,233456898,233457220,233458283,233459756,233460193,233462347,233462642,233464163,233467085,233468422,233469370	233354674,233388367,233390483,233434484,233434901,233435924,233436441,233437479,233438379,233441995,233445762,233446796,233448181,233448375,233449376,233450131,233451050,233452060,233454873,233456995,233457328,233458397,233459891,233460345,233462459,233462735,233464283,233467203,233468553,233472097	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	1655409	1655445	1655410	-	RAMPAGE_only	17	21	48	1.105192	5.194236	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	123279459	123279474	123279469	-	RAMPAGE_only	4	4	12	0.276298	2.913977	chr8	123279322	123279782	LTR|ERVL-MaLR|MLT1H	-	chr8	123248449	123275541	ZHX1|NR_037873.1	-	123248449,123253321,123267272,123275339	123250320,123256171,123267386,123275541	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	10929317	10929339	10929338	+	RAMPAGE_only	5	5	13	0.299323	2.661226	chr3	10929386	10929565	SINE|MIR|MIRb	+	chr3	10816200	10942034	MSTRG.16954.2	+	10816200,10819464,10819711,10823301,10844213,10874960,10912089,10918328,10926003,10929201,10933150,10934065,10935028,10938249,10940517	10816521,10819599,10819852,10823392,10844346,10875095,10912193,10918453,10926116,10929339,10933253,10934166,10935199,10940427,10942034	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	133089611	133089693	133089677	+	RAMPAGE_only	25	42	140	3.223475	6.037783	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	7946875	7946898	7946878	+	High_confidence	340	344	1449	33.362969	6.437794	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8143778	MSTRG.11797.5	+	7946869,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8143646	7946977,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8143778	0.982747
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	124674152	124674198	124674197	+	High_confidence	8	8	18	0.414447	3.969816	chr11	124674230	124674340	SINE|Alu|AluJo	+	chr11	124673843	124697518	SPA17|ENST00000532692.1	+	124673843,124681388,124691695,124694302	124675418,124681459,124691782,124697518	0.944444
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	98288511	98289345	98289288	-	RAMPAGE_only	83	115	1294	29.794121	6.957866	chr9	98289190	98289411	SINE|MIR|MIRc	-	chr9	98288081	98709197	GABBR2|ENST00000259455.3	-	98288081,98293784,98299223,98303240,98306120,98311094,98362714,98371463,98385639,98388853,98394174,98406080,98453980,98473145,98480931,98496412,98541872,98577934,98708416	98290749,98293902,98299353,98303423,98306345,98311205,98362837,98371571,98385772,98389004,98394255,98406141,98454217,98473346,98480997,98496514,98542043,98578072,98709197	0.996909
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	39026790	39026843	39026790	+	High_confidence	4	4	29	0.667720	4.211261	chr1	39026635	39026832	LINE|L2|L2	+	chr1	39026317	39034636	NDUFS5|ENST00000372967.3	+	39026317,39028722,39034391	39026398,39028940,39034636	0.965517
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	94070559	94070619	94070559	-	High_confidence	21	33	139	3.200450	5.925867	chr15	94070430	94070669	SINE|5S-Deu-L2|AmnSINE1	-	chr15	94064368	94070820	LINC01579|ENST00000555772.1	-	94064368,94066768,94070523	94065292,94066879,94070820	0.805755
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	113873339	113873388	113873346	-	High_confidence	15	15	61	1.404514	4.786524	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.688525
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	74350017	74350033	74350017	-	High_confidence	2	2	10	0.230248	3.321928	chr8	74349865	74349977	LINE|L1|L1MC4	-	chr8	74347756	74350050	AC103952.1|ENST00000521872.1	-	74347756,74349909	74348205,74350050	0.700000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	153872174	153872206	153872174	+	High_confidence	6	13	35	0.805869	4.491443	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.914286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	82844098	82844154	82844110	-	RAMPAGE_only	15	16	42	0.967043	4.422578	chr15	82843867	82844250	LTR|ERVL-MaLR|MLT1I	-	chr15	82836945	82849727	HOMER2|ENST00000558090.2	-	82836945,82849688	82847247,82849727	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	156418566	156418582	156418581	-	RAMPAGE_only	5	5	21	0.483521	3.975418	chr1	156418390	156418698	SINE|Alu|AluSc	+	chr1	156404249	156417439	C1orf61|ENST00000608007.1	-	156404249,156414653	156404601,156417439	0.761905
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	41871790	41871833	41871832	-	RAMPAGE_only	4	5	24	0.552596	4.334963	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.791667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	28617958	28617994	28617958	-	RAMPAGE_only	2	2	10	0.230248	2.947703	chr1	28617880	28617910	SINE|MIR|MIR	-	chr1	28603100	28643005	TAF12|ENST00000263974.4	-	28603100,28605371,28613246,28617952,28621913,28642654	28603574,28605460,28613361,28618030,28622165,28643005	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	89904138	89904162	89904161	+	High_confidence	3	3	11	0.253273	2.846439	chr16	89904174	89904222	LINE|CR1|L3	+	chr16	89905008	89909174	TCF25|ENST00000563484.1	+	89905008,89906193,89907242,89908965	89905096,89906284,89907322,89909174	0.727273
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	11058814	11058830	11058814	-	RAMPAGE_only	4	5	10	0.230248	2.846439	chr1	11058682	11058785	SINE|MIR|MIRc	-	chr1	11054588	11060024	SRM|ENST00000376957.6	-	11054588,11054961,11055780,11056010,11056603,11058799,11059224,11059776	11054885,11055084,11055926,11056094,11056757,11058892,11059345,11060024	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	133952645	133952693	133952645	+	High_confidence	6	6	33	0.759819	4.476064	chr6	133952660	133952828	DNA|hAT-Charlie|Charlie2a	+	chr6	133952169	133987500	TBPL1|NM_001253676.1	+	133952169,133980081,133982567,133982816,133984375,133984576,133986960	133952730,133980260,133982650,133982880,133984479,133984671,133987500	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	44305172	44305184	44305175	+	High_confidence	4	5	13	0.299323	3.392747	chr21	44305083	44305240	SINE|MIR|MIRc	+	chr21	44305193	44313954	PFKL|ENST00000491298.1	+	44305193,44306680,44311005,44312104,44312977,44313637,44313912	44305417,44306754,44311083,44312294,44313143,44313682,44313954	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	103686108	103686121	103686109	-	High_confidence	4	7	20	0.460496	3.787144	chrX	103685658	103686122	LINE|L1|L1MC5	-	chrX	103675504	103686668	MORF4L2|ENST00000441076.6	-	103675504,103678498,103685170,103686630	103677051,103678651,103685260,103686668	0.950000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31119436	31119479	31119470	-	High_confidence	6	6	32	0.736794	4.002268	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.781250
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	180684904	180684942	180684904	-	RAMPAGE_only	2	2	10	0.230248	3.169925	chr3	180684657	180685442	LTR|ERVL|LTR41	+	chr3	180614587	180679500	CCDC39|ENST00000442201.6	-	180614587,180616280,180616515,180616825,180619258,180619810,180631468,180641992,180644119,180647078,180648164,180651400,180652162,180654761,180659451,180659676,180660569,180661860,180663866,180679290	180615077,180616363,180616695,180616966,180619365,180619970,180631592,180642201,180644257,180647243,180648359,180651533,180652266,180654953,180659580,180659769,180660728,180662007,180663986,180679500	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	24995130	24995133	24995130	+	RAMPAGE_only	15	17	32	0.736794	4.429229	chr15	24995035	24995326	SINE|Alu|AluSx4	+	chr15	24981993	25000276	MSTRG.7932.21	+	24981993,24998969,25000244	24998486,24999078,25000276	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	93504673	93504674	93504673	-	RAMPAGE_only	7	7	7	0.161174	2.807355	chr5	93504513	93504869	LTR|ERVL-MaLR|THE1A	-	chr5	93411017	93438737	NR2F1-AS1|ENST00000606188.1	-	93411017,93438702	93411509,93438737	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	88147767	88147787	88147786	-	RAMPAGE_only	3	7	12	0.276298	3.251629	chr6	88147611	88147801	LINE|L2|L2c	+	chr6	88143243	88145365	CNR1|ENST00000549890.1	-	88143243	88145365	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	76093963	76093975	76093974	+	RAMPAGE_only	3	3	9	0.207223	2.750000	chr4	76093875	76094237	LTR|ERVL-MaLR|MLT1A	+	chr4	76082498	76112412	ART3|ENST00000511188.1	+	76082498,76097643,76098954,76100290,76100794,76100989,76103936,76104596,76105521,76107760,76112385	76082535,76097676,76098987,76100320,76100824,76101019,76103969,76104629,76105554,76107793,76112412	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	73841948	73841974	73841973	-	High_confidence	3	4	11	0.253273	2.846439	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.818182
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	44319231	44319320	44319319	-	RAMPAGE_only	41	42	162	3.730021	4.412997	chr2	44319280	44319536	LINE|L1|L1ME4c	+	chr2	44317606	44359749	PREPL|NM_001042386.2	-	44317606,44321826,44322730,44323261,44326711,44328936,44338350,44339146,44342416,44343744,44344519,44346267,44359496	44321445,44321900,44322854,44323411,44326928,44329112,44338536,44339363,44342552,44343951,44344586,44346390,44359749	0.962963
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	168179896	168179920	168179908	+	High_confidence	5	5	20	0.460496	4.037401	chr1	168179860	168180632	LINE|L2|L2c	-	chr1	168179054	168192395	TIPRL|ENST00000367830.3	+	168179054,168183901,168184778,168191368,168192207	168179181,168184081,168184878,168191500,168192395	0.600000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	133369958	133370021	133370016	-	RAMPAGE_only	5	8	49	1.128216	4.930837	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	174853913	174853923	174853913	+	RAMPAGE_only	3	4	9	0.207223	2.947703	chr4	174853324	174854110	DNA|TcMar-Tigger|Tigger7	-	chr4	174831727	174875964	LOC101928551|NR_125900.1	+	174831727,174834848,174856530,174868805,174875794	174831886,174834937,174856607,174870035,174875964	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	44828853	44828885	44828853	-	RAMPAGE_only	2	2	10	0.230248	2.921928	chr7	44828696	44829092	LTR|ERVL-MaLR|MLT1D	-	chr7	44826790	44848077	H2AFV|ENST00000222690.10	-	44826790,44835528,44840898,44843276,44847968	44830163,44835658,44841012,44843354,44848077	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	75512945	75512946	75512945	+	High_confidence	8	8	9	0.207223	3.000000	chr5	75512845	75513016	SINE|Alu|AluSx1	+	chr5	75512068	75573837	POLK|ENST00000514296.5	+	75512068,75534827,75547009,75552471,75569339,75573737	75512946,75534964,75547157,75552591,75569492,75573837	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	117877359	117877430	117877416	-	High_confidence	14	15	112	2.578780	5.025483	chr11	117877415	117877598	SINE|MIR|MIRb	+	chr11	117836975	117877486	FXYD6|NM_001164831.2	-	117836975,117839780,117840318,117841147,117841790,117841989,117842718,117877298	117838277,117839830,117840368,117841184,117841865,117842028,117842781,117877486	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	163445820	163445821	163445820	+	RAMPAGE_only	12	12	18	0.414447	3.572469	chr6	163445615	163445913	SINE|Alu|AluY	-	chr6	163455215	163563461	QKI|ENST00000544823.5	+	163455215,163478779,163534981,163561981,163563419	163455421,163478896,163535125,163562069,163563461	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	9422943	9422990	9422943	-	High_confidence	2	2	17	0.391422	3.500000	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9408151	9423176	ITGB1BP1|ENST00000494563.5	-	9408151,9412268,9414177,9418625,9419989,9422965	9408205,9412405,9414256,9418732,9420100,9423176	0.529412
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	15006394	15006415	15006394	+	RAMPAGE_only	10	10	17	0.391422	2.905639	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.647059
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	76050925	76050926	76050925	-	RAMPAGE_only	7	7	7	0.161174	2.807355	chr12	76050731	76051020	SINE|Alu|AluJo	+	chr12	76049433	76053158	NAP1L1|ENST00000547969.5	-	76049433,76050530,76053090	76049785,76050653,76053158	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	2838253	2838261	2838258	+	RAMPAGE_only	7	7	22	0.506546	3.784942	chr4	2838108	2838543	LINE|L1|L1ME3B	-	chr4	2843856	2930076	ADD1|NM_176801.2	+	2843856,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763,2907742,2908514,2914883,2926013,2926641,2928170	2844024,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905108,2907844,2908604,2915040,2926112,2926675,2930076	0.954545
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	61517325	61517336	61517332	+	RAMPAGE_only	2	2	8	0.184199	2.521641	chr4	61517137	61518029	DNA|hAT-Charlie|Charlie17b	+	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	103273605	103273622	103273621	-	RAMPAGE_only	13	25	52	1.197291	4.415940	chr7	103273579	103273710	SINE|MIR|MIRc	-	chr7	103273091	103280277	DPY19L2P2|ENST00000446373.1	-	103273091,103277613,103279832	103275627,103277638,103280277	0.980769
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	45450739	45450766	45450765	-	High_confidence	3	3	11	0.253273	3.277613	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	33818324	33818393	33818364	+	High_confidence	4	4	29	0.667720	4.384517	chr13	33818361	33818761	LINE|L2|L2a	-	chr13	33818068	33837507	RFC3|NM_002915.3	+	33818068,33821131,33823916,33825788,33829835,33830718,33831255,33835147,33836103	33818265,33821269,33823984,33825886,33830017,33830855,33831354,33835217,33837507	0.793103
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	54920503	54920518	54920517	+	High_confidence	4	4	9	0.207223	2.750000	chrX	54920421	54920568	LINE|L2|L2c	-	chrX	54920562	54922877	TRO|ENST00000452830.5	+	54920562,54922217	54920878,54922877	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	100102275	100102299	100102275	+	High_confidence	4	4	13	0.299323	3.546594	chr7	100102098	100102390	SINE|Alu|AluSx1	+	chr7	100102085	100103296	AP4M1|ENST00000495154.1	+	100102085,100102674,100102863,100103227	100102393,100102781,100102960,100103296	0.538462
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	232584383	232584428	232584420	-	High_confidence	3	3	22	0.506546	3.154222	chr2	232584416	232584592	LTR|ERVL|LTR50	-	chr2	232581150	232584791	AC073254.1|ENST00000447488.2	-	232581150,232584305	232581304,232584791	0.954545
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	67231038	67231062	67231048	-	RAMPAGE_only	5	5	24	0.552596	3.125815	chr10	67230665	67236674	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.958333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	5004627	5004695	5004694	-	RAMPAGE_only	6	6	22	0.506546	3.879664	chr18	5004136	5010155	LINE|L1|L1PA2	+	chr18	5002758	5003254	PPIAP14|ENST00000577627.1	-	5002758	5003254	0.590909
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	64318707	64318734	64318733	+	High_confidence	4	4	11	0.253273	3.277613	chr11	64318595	64318908	SINE|Alu|AluSx	-	chr11	64318181	64321740	PRDX5|ENST00000352435.8	+	64318181,64319733,64320864,64321006,64321585	64318386,64319868,64320903,64321068,64321740	0.636364
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	52014703	52014723	52014722	-	RAMPAGE_only	4	4	12	0.276298	2.751629	chr19	52014362	52015009	LTR|ERVL|MER21C	-	chr19	52013323	52028427	ZNF614|NM_025040.3	-	52013323,52018007,52018367,52025730,52028241	52017359,52018103,52018494,52025961,52028427	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	38612622	38612626	38612622	+	RAMPAGE_only	2	2	7	0.161174	2.521641	chrX	38612500	38614189	LINE|L1|HAL1	-	chrX	38570682	38675816	TSPAN7|ENST00000488893.5	+	38570682,38666120,38671375,38674220,38675704	38570946,38666309,38671450,38674316,38675816	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	147559993	147560014	147559993	+	High_confidence	11	11	19	0.437472	4.058814	chr5	147559899	147560053	DNA|hAT-Charlie|MER5A1	-	chr5	147559993	147662009	JAKMIP2-AS1|NR_038902.1	+	147559993,147594359,147595439,147660452	147560137,147594477,147595540,147662009	0.684211
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	205188102	205188107	205188102	+	RAMPAGE_only	3	3	7	0.161174	2.807355	chr2	205187953	205188316	LINE|L2|L2c	-	chr2	204965151	205620162	PARD3B|ENST00000622699.2	+	204965151,205047580,205104425,205113490,205118920,205121590,205124326,205125608,205158721,205172210,205176444,205185763,205193204,205245777,205300529,205301463,205401012,205499895,205553323,205615455	204965323,205047690,205104514,205113577,205119046,205121949,205124466,205125737,205158907,205172381,205176577,205185863,205193320,205245822,205300736,205301701,205401123,205500031,205553403,205620162	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	57187904	57187928	57187911	+	RAMPAGE_only	3	4	9	0.207223	2.750000	chr11	57187622	57187935	LINE|L2|L2b	-	chr11	57181746	57191717	LRRC55|ENST00000497933.1	+	57181746,57187244	57182683,57191717	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	116085461	116085477	116085461	+	High_confidence	9	9	34	0.782844	4.538910	chr5	116085484	116085794	DNA|hAT-Charlie|MER113	+	chr5	116085461	116293290	COMMD10|NM_001308080.1	+	116085461,116087496,116091078,116092544,116134067,116291516,116292450	116085606,116087587,116091189,116092700,116134178,116291576,116293290	0.647059
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	97758580	97758643	97758641	+	RAMPAGE_only	6	10	38	0.874943	4.649115	chr3	97758479	97758933	LINE|L2|L2a	-	chr3	96814790	97761532	MSTRG.17588.3	+	96814790,96866824,96906270,96936013,96987329,97226263,97243951,97405149,97448124,97448567,97475351,97479293,97483933,97532357,97592611,97610792,97637872,97720260,97735924,97747422,97748586	96815008,96866889,96906348,96936133,96987993,97226419,97244287,97405274,97448172,97448730,97475460,97479364,97484059,97532543,97592737,97610854,97638082,97720410,97736118,97747572,97761532	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	163426384	163426400	163426399	+	RAMPAGE_only	3	3	8	0.184199	2.807355	chr6	163425976	163427403	LINE|L1|L1MC5a	-	chr6	163428994	163534984	QKI|ENST00000545346.1	+	163428994,163455278,163457380,163478779,163534981	163429017,163455421,163457551,163478896,163534984	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrY	4036474	4036502	4036475	+	High_confidence	5	8	31	0.713770	4.069577	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	0.741935
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	65642904	65642934	65642916	+	High_confidence	3	3	13	0.299323	3.392747	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	94435344	94435351	94435350	-	RAMPAGE_only	6	6	13	0.299323	3.418296	chr12	94435233	94435447	LTR|ERV1|MER39	+	chr12	94308285	94412595	CEP83|ENST00000397807.6	-	94308285,94309917,94312913,94312930,94331699,94333481,94335588,94367793,94368056,94369921,94375885,94378790,94400849,94403169,94411696,94412317	94308917,94310107,94312929,94313017,94331829,94333639,94335664,94367943,94368201,94370036,94376017,94379042,94400981,94403262,94411847,94412595	0.846154
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	111413972	111413995	111413976	-	RAMPAGE_only	23	24	108	2.486681	5.783261	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	110663049	111562291	IMMP2L|NM_032549.3	-	110663049,110886592,110963499,111487237,111521312,111561850	110663721,110886695,110963565,111487341,111521449,111562291	0.555556
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	144103585	144103610	144103585	-	High_confidence	2	2	9	0.207223	2.500000	chr8	144103289	144103558	SINE|MIR|MIR	-	chr8	144098636	144104190	SHARPIN|ENST00000398712.6	-	144098636,144098865,144099080,144099276,144099509,144099702,144099928,144103050,144103552	144098788,144098994,144099205,144099430,144099618,144099844,144100069,144103225,144104190	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	31188882	31188916	31188915	+	RAMPAGE_only	4	4	15	0.345372	3.521641	chr17	31188574	31189019	LTR|ERVL|MLT2A1	+	chr17	31200535	31374433	NF1|ENST00000456735.6	+	31200535,31201036,31201410,31206239,31214450,31219004,31221849,31223443,31225094,31226434,31227217,31227522,31229024,31229834,31230259,31230841,31232072,31232699,31233001,31235610,31235917,31248983,31258343,31259031,31260368,31261710,31265228,31325819,31327498,31330295,31334837,31336332,31336634,31337367,31337818,31338024,31338703,31340504,31343008,31349119,31350182,31352256,31356459,31356959,31357268,31358479,31358968,31360486,31367224,31374012	31200595,31201159,31201485,31206371,31214585,31219118,31221929,31223567,31225250,31226684,31227291,31227606,31229465,31229974,31230382,31230925,31232189,31232881,31233213,31235772,31236021,31249119,31258502,31259129,31260515,31261857,31265339,31326252,31327839,31330498,31335031,31336473,31336914,31337582,31337880,31338139,31338805,31340645,31343135,31349251,31350318,31352414,31356582,31357090,31357369,31358622,31359015,31360703,31367278,31374433	0.933333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	23838586	23838597	23838596	-	High_confidence	3	3	7	0.161174	2.807355	chr1	23837780	23838651	LTR|ERV1|LTR1A2	+	chr1	23801886	23838620	HMGCL|ENST00000374487.6	-	23801886,23804399,23808134,23810735,23814189,23816674,23817475,23820509,23826083,23838063	23802564,23804525,23808323,23810799,23814338,23816770,23817583,23820593,23826183,23838620	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	57641613	57641624	57641613	+	High_confidence	2	2	9	0.207223	3.000000	chr16	57641565	57641864	SINE|Alu|AluSz6	-	chr16	57640964	57651468	ADGRG1|ENST00000563414.5	+	57640964,57641590,57650252,57651199	57641064,57641708,57650351,57651468	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	127624040	127624217	127624078	+	RAMPAGE_only	37	56	323	7.437018	6.277308	chr5	127623227	127624265	LINE|L1|HAL1	+	chr5	127649020	127658630	CTXN3|NM_001048252.2	+	127649020,127653316,127657422	127649388,127653423,127658630	0.879257
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	110728253	110728283	110728261	+	High_confidence	5	5	20	0.460496	3.921928	chr9	110728186	110728327	DNA|DNA|UCON78	+	chr9	110728272	110768018	MUSK|ENST00000634612.1	+	110728272,110728690,110734250,110747640,110762201,110767819	110728295,110728717,110734375,110747800,110762208,110768018	0.600000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	187021850	187021855	187021851	+	High_confidence	4	6	10	0.230248	2.947703	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	80655184	80655185	80655184	+	High_confidence	5	7	7	0.161174	2.521641	chr5	80655174	80655239	SINE|MIR|MIR3	-	chr5	80654647	80876460	MSH3|ENST00000265081.6	+	80654647,80656410,80665142,80670096,80672243,80672740,80674982,80678926,80725452,80728850,80741463,80744505,80761545,80767932,80768834,80775693,80778719,80787564,80792732,80813583,80854129,80864812,80873115,80875750	80654964,80656531,80665363,80670309,80672360,80672858,80675128,80679093,80725565,80728965,80741548,80744615,80761678,80768120,80769003,80775758,80778836,80787672,80792844,80813741,80854316,80864942,80873287,80876460	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	94070695	94070721	94070695	-	High_confidence	9	9	46	1.059142	5.289760	chr15	94070430	94070669	SINE|5S-Deu-L2|AmnSINE1	-	chr15	94064368	94070820	LINC01579|ENST00000555772.1	-	94064368,94066768,94070523	94065292,94066879,94070820	0.695652
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	46540537	46540551	46540537	-	RAMPAGE_only	3	3	8	0.184199	3.000000	chr19	46540383	46540588	LTR|ERVL-MaLR|MLT1B	-	chr19	46480795	46600932	PPP5D1|ENST00000602017.5	-	46480795,46525662,46526924,46600882	46481440,46525784,46527072,46600932	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	141333512	141333582	141333512	+	RAMPAGE_only	12	17	96	2.210383	4.770648	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141636595	141733987	IL15|NM_172175.2	+	141636595,141656185,141688821,141719377,141720468,141721058,141721923,141727939,141729846,141732737	141636748,141656307,141689035,141719476,141720566,141721177,141722008,141727984,141729984,141733987	0.708333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	9884149	9884150	9884149	+	RAMPAGE_only	4	4	7	0.161174	2.584963	chr2	9883881	9884768	LTR|ERV1|MER52A	-	chr2	9875997	9913709	TAF1B|ENST00000492648.2	+	9875997,9882705,9904858,9910735,9911510,9913158	9876018,9882805,9905006,9910913,9911557,9913709	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	93455214	93455234	93455214	+	RAMPAGE_only	2	2	8	0.184199	2.500000	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	14245647	14245652	14245647	+	RAMPAGE_only	5	5	11	0.253273	3.095795	chr16	14245645	14245696	SINE|tRNA|LFSINE_Vert	+	chr16	14178580	14266771	MSTRG.9243.10	+	14178580,14210242,14212353,14213544,14217125,14218819,14234145,14240236,14245527,14246472,14248925,14251861,14252364,14258100,14260908	14187035,14210308,14212409,14213620,14217287,14218998,14234283,14240484,14245660,14247507,14249081,14252023,14252502,14258161,14266771	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	88611927	88611985	88611927	-	High_confidence	7	7	38	0.874943	4.984770	chr5	88611830	88613057	LINE|L1|L1MDa	+	chr5	88540510	88611776	LINC00461|ENST00000506664.5	-	88540510,88542034,88611663	88541123,88542070,88611776	0.815789
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	17934766	17934767	17934766	+	RAMPAGE_only	6	7	8	0.184199	3.000000	chr8	17934728	17935264	LTR|Gypsy?|LTR85a	-	chr8	17924743	18027975	PCM1|ENST00000524226.5	+	17924743,17935588,17937133,17938739,17939690,17947185,17950614,17952969,17955469,17956603,17957263,17957536,17960013,17960314,17962033,17963100,17964567,17965998,17966327,17966979,17969576,17972328,17985446,17985958,17989858,17991541,17993482,18006262,18009546,18010608,18011236,18011666,18025360,18025543,18027636	17924780,17935706,17937379,17939009,17939861,17947363,17950724,17953186,17955653,17956777,17957421,17957775,17960165,17960444,17962174,17963291,17964768,17966218,17966473,17967170,17969748,17972687,17985619,17986087,17989979,17991700,17993619,18006397,18009744,18010668,18011366,18011827,18025453,18025658,18027975	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	3062734	3062741	3062734	-	High_confidence	3	3	8	0.184199	2.521641	chr19	3062710	3062746	SINE|MIR|MIR3	+	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	119781113	119781118	119781117	+	RAMPAGE_only	4	5	9	0.207223	2.750000	chr10	119781007	119781507	LINE|L1|L1MC4a	-	chr10	119750876	119828360	INPP5F|ENST00000647699.1	+	119750876,119781634,119791516,119791868,119792156,119796714,119797460,119798542,119804172,119805383,119806359,119807931,119810099,119811756,119820845,119822430,119823070,119823814,119826630	119751156,119781771,119791645,119792036,119792213,119796913,119797640,119798610,119804297,119805461,119806480,119808060,119810217,119811955,119820917,119822504,119823199,119823902,119828360	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	58305629	58305670	58305629	+	High_confidence	22	23	161	3.706997	6.303392	chr19	58305670	58306101	LTR|ERVK|LTR3	+	chr19	58305376	58312462	ERVK3-1|ENST00000609864.5	+	58305376,58306087,58312020,58312165	58305445,58306216,58312061,58312462	0.689441
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	196838772	196838847	196838788	-	RAMPAGE_only	4	5	28	0.644695	4.208966	chr2	196838616	196838762	DNA?|DNA?|MER124	-	chr2	196837870	196842825	PGAP1|ENST00000459896.5	-	196837870,196842720	196838529,196842825	0.785714
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	191245163	191245173	191245163	+	High_confidence	8	8	17	0.391422	3.734522	chr2	191245108	191245343	LINE|L1|L1M4b	+	chr2	191245184	191346274	MYO1B|ENST00000418908.5	+	191245184,191276886,191296110,191329934,191341460,191346235	191245257,191277030,191296226,191330029,191341565,191346274	0.882353
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	134875064	134875080	134875064	+	High_confidence	5	5	15	0.345372	3.664498	chr5	134874872	134875108	SINE|MIR|MIRb	-	chr5	134875095	134888180	TXNDC15|ENST00000508810.1	+	134875095,134887694	134875188,134888180	0.733333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	30971746	30971763	30971762	+	High_confidence	4	5	11	0.253273	3.277613	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	39485802	39485803	39485802	+	High_confidence	7	7	11	0.253273	3.095795	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	100038810	100038811	100038810	+	RAMPAGE_only	11	13	13	0.299323	3.546594	chr7	100038713	100039008	SINE|Alu|AluSc8	+	chr7	100023407	100041688	ZKSCAN1|ENST00000620510.1	+	100023407,100023551,100024153,100029860,100030248,100033304	100023461,100023932,100024307,100029952,100030375,100041688	0.846154
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	44732805	44732836	44732832	+	RAMPAGE_only	4	4	13	0.299323	3.026987	chr15	44732534	44732858	LTR|ERV1|MER49	+	chr15	44729000	44734000	TRIM69|ENST00000560141.2	+	44729000,44731362	44729552,44734000	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	28685387	28685438	28685437	+	RAMPAGE_only	7	7	22	0.506546	3.880180	chr3	28685251	28685698	DNA|hAT-Tip100|Zaphod	+	chr3	28576427	28757595	RBMS3|ENST00000445077.1	+	28576427,28757108,28757349	28576496,28757241,28757595	0.636364
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	122741938	122741968	122741967	-	RAMPAGE_only	5	7	20	0.460496	4.037401	chr5	122741229	122742053	LINE|L2|L2a	+	chr5	122628951	122730560	LOC101927379|NR_109881.1	-	122628951,122638888,122640432,122641132,122697170,122699656,122704207,122705425,122722213,122725945,122728341,122730488	122629424,122638981,122640491,122641237,122697342,122699860,122704348,122705469,122722323,122726066,122728399,122730560	0.700000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	48683361	48683363	48683361	+	High_confidence	17	31	31	0.713770	4.257111	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	61812377	61812394	61812377	-	RAMPAGE_only	34	36	55	1.266365	4.838191	chr18	61812140	61812347	DNA|hAT-Charlie|MER3	-	chr18	61808062	61893759	RNF152|ENST00000312828.3	-	61808062,61892794	61816598,61893759	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50326342	50326367	50326363	+	RAMPAGE_only	6	6	26	0.598645	4.220176	chr22	50326357	50326591	LINE|L2|L2	-	chr22	50343303	50445090	PPP6R2|ENST00000359139.7	+	50343303,50372019,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439697,50439960,50440821,50443865,50444202	50343550,50372150,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50445090	0.576923
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	55618850	55618904	55618869	-	High_confidence	23	23	96	2.210383	5.889548	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.885417
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	47974253	47974315	47974314	-	RAMPAGE_only	6	6	27	0.621670	4.563856	chr3	47974143	47974434	SINE|Alu|AluSz	+	chr3	47973083	48016412	MAP4|ENST00000434267.5	-	47973083,47977864,47998637,48016333	47975465,47977933,47998879,48016412	0.925926
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	102363764	102363808	102363772	-	High_confidence	20	21	108	2.486681	5.653266	chr14	102363630	102363879	SINE|MIR|MIR	+	chr14	102342618	102363798	MSTRG.7730.2	-	102342618,102343634,102348278,102349918,102355767,102359418,102363737	102342726,102344389,102348759,102350048,102355897,102359587,102363798	0.953704
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	161102072	161102102	161102072	-	RAMPAGE_only	2	2	12	0.276298	3.277613	chr1	161101763	161102022	SINE|Alu|AluJb	-	chr1	161100555	161118055	PFDN2|ENST00000468311.1	-	161100555,161117951	161100859,161118055	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	73404342	73404739	73404410	-	RAMPAGE_only	34	43	527	12.134082	5.405155	chr11	73404305	73404446	SINE|MIR|MIRc	+	chr11	73400477	73598189	FAM168A|NM_001286051.1	-	73400477,73407512,73419873,73430689,73468404,73597922	73406744,73407643,73419999,73430770,73468492,73598189	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	12800935	12801038	12800944	-	High_confidence	15	15	127	2.924153	5.479120	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.937008
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	77491284	77491317	77491309	-	High_confidence	25	26	103	2.371557	5.311044	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77453865	77491285	WDR41|ENST00000504895.5	-	77453865,77459061,77463094,77464760,77489456,77491192	77453928,77459124,77463226,77464809,77489572,77491285	0.786408
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	1261425	1261426	1261425	+	High_confidence	6	6	8	0.184199	2.521641	chr19	1261339	1261573	LINE|L2|L2c	-	chr19	1261381	1271029	CIRBP|ENST00000592051.1	+	1261381,1264252,1270927	1261641,1264463,1271029	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	89944284	89944295	89944284	-	RAMPAGE_only	3	3	12	0.276298	3.277613	chr14	89944085	89944442	LTR|ERVL-MaLR|THE1B	-	chr14	89797156	89952605	EFCAB11|ENST00000553871.5	-	89797156,89931540,89932525,89950096,89952388	89797324,89931631,89932627,89950142,89952605	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	65570441	65570466	65570441	+	High_confidence	5	5	22	0.506546	3.725651	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570451	65615757	LINC01515|ENST00000601979.5	+	65570451,65572934,65585484,65585664,65615635	65570545,65573056,65585567,65585802,65615757	0.818182
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	8384046	8384068	8384046	-	High_confidence	7	9	55	1.266365	5.120357	chr17	8384033	8384050	SINE|Alu|AluSq	-	chr17	8377515	8383250	RPL26|ENST00000293842.10	-	8377515,8379795,8382142,8383156	8377692,8379936,8382315,8383250	0.654545
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	179333001	179333017	179333001	+	RAMPAGE_only	36	37	60	1.381489	4.781728	chr3	179332959	179333116	SINE|MIR|MIR1_Amn	-	chr3	179329633	179333730	ZNF639|ENST00000466663.1	+	179329633,179329933,179332988,179333268	179329728,179330055,179333123,179333730	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	170541860	170541861	170541860	-	RAMPAGE_only	4	4	6	0.138149	2.584963	chr6	170541779	170541879	SINE|MIR|MIRb	+	chr6	170535115	170553329	PSMB1|NM_002793.3	-	170535115,170537233,170543600,170546102,170549005,170553129	170535405,170537340,170543730,170546184,170549113,170553329	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	3346295	3346306	3346305	+	RAMPAGE_only	4	4	9	0.207223	3.000000	chr4	3346045	3347162	LTR|ERV1|MER65-int	-	chr4	3342414	3416121	RGS12|ENST00000513784.7	+	3342414,3342936,3386415,3414071,3414751,3415977	3342578,3343053,3386437,3414241,3414844,3416121	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	11618119	11618149	11618119	+	RAMPAGE_only	1	1	7	0.161174	2.584963	chr19	11618078	11618188	LTR|ERVL|LTR33C	+	chr19	11597482	11619124	ZNF627|ENST00000588174.1	+	11597482,11614526,11614826,11616705	11597630,11614653,11614887,11619124	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	3062919	3062940	3062922	-	High_confidence	88	115	300	6.907447	6.162166	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.973333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	6918647	6918669	6918666	-	High_confidence	10	11	60	1.381489	5.289091	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6913626	6918667	RNF144A-AS1|ENST00000426122.1	-	6913626,6914192,6918284	6913664,6914350,6918667	0.566667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	17282902	17282915	17282914	+	RAMPAGE_only	4	4	9	0.207223	2.500000	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	41632132	41632157	41632140	-	High_confidence	3	3	9	0.207223	2.725481	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41521197	41632075	KC6|ENST00000600183.5	-	41521197,41525354,41631999	41521496,41525526,41632075	0.555556
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	118192737	118192769	118192768	-	RAMPAGE_only	12	14	29	0.667720	3.528242	chr8	118192750	118192931	DNA|hAT-Tip100|ORSL-2a	+	chr8	118189454	118621914	SAMD12|ENST00000409003.5	-	118189454,118379559,118439861,118580714,118621803	118197732,118379700,118439961,118580893,118621914	0.931034
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	123418996	123419017	123419016	-	RAMPAGE_only	4	4	8	0.184199	2.521641	chr6	123419006	123419359	LTR|ERVL|LTR47A	-	chr6	123349474	123637093	TRDN|NM_001251987.1	-	123349474,123366134,123375604,123377715,123377865,123381369,123382117,123388521,123393623,123438062,123438943,123464905,123497192,123503718,123512302,123516140,123530505,123547339,123548453,123570922,123636753	123352586,123366182,123375631,123377742,123377898,123381390,123382147,123388551,123393677,123438125,123439003,123464983,123497252,123503901,123512362,123516206,123530565,123547372,123548612,123571132,123637093	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	234660311	234660312	234660311	+	RAMPAGE_only	10	11	14	0.322348	3.546594	chr1	234659950	234660648	LTR|ERV1|MER50B	+	chr1	234646288	234660924	AL160408.1|ENST00000417805.1	+	234646288,234655225,234656107,234660133	234646505,234655464,234656233,234660924	0.785714
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	13615995	13615996	13615995	+	High_confidence	5	5	7	0.161174	2.807355	chr6	13615954	13616046	SINE|Alu|AluJb	+	chr6	13615588	13632739	NOL7|ENST00000474485.1	+	13615588,13615711,13616462,13617769,13618057,13620207,13620407,13620753,13632392	13615624,13615772,13616521,13617801,13618139,13620329,13620485,13620856,13632739	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	32221748	32221755	32221748	+	High_confidence	7	7	12	0.276298	3.277613	chr1	32221596	32221823	SINE|MIR|MIRb	-	chr1	32221583	32231604	EIF3I|NM_003757.3	+	32221583,32222357,32222537,32224033,32224409,32226170,32226402,32228498,32228726,32229134,32230926,32231114	32222032,32222444,32222630,32224121,32224475,32226320,32226530,32228609,32228816,32229208,32231019,32231604	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	40312925	40312951	40312950	-	RAMPAGE_only	5	6	15	0.345372	3.323231	chr1	40312944	40313017	SINE|MIR|MIRc	-	chr1	40310110	40315438	COL9A2|ENST00000488463.6	-	40310110,40310263,40310713,40311092,40311229,40311499,40311661,40312058,40312455,40312573,40312730,40314204,40314351,40315237	40310164,40310317,40310767,40311146,40311286,40311547,40311715,40312112,40312479,40312609,40312784,40314267,40314387,40315438	0.866667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	166850015	166850062	166850015	+	RAMPAGE_only	4	5	26	0.598645	4.363713	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	150081923	150081953	150081952	+	RAMPAGE_only	8	11	37	0.851918	4.777021	chr4	150081714	150082027	SINE|Alu|AluSx1	+	chr4	150079027	150256247	DCLK2|ENST00000506325.5	+	150079027,150102477,150193137,150198001,150203794,150220705,150221676,150224500,150232336,150232681,150239741,150240398,150247602,150248304,150249567,150256019	150079448,150102812,150193240,150198103,150203889,150220778,150221785,150224558,150232456,150232828,150239875,150240476,150247699,150248385,150249684,150256247	0.945946
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	41710611	41710640	41710633	+	RAMPAGE_only	3	3	13	0.299323	2.855389	chr7	41710641	41710740	SINE|MIR|MIR1_Amn	+	chr7	41693936	41712757	INHBA-AS1|ENST00000422822.1	+	41693936,41710597	41694088,41712757	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	183452250	183452260	183452250	+	RAMPAGE_only	1	1	7	0.161174	2.584963	chr3	183452059	183452354	SINE|Alu|AluSz6	-	chr3	183447650	183455625	LINC00888|ENST00000468380.1	+	183447650,183452077,183454011,183455198	183447947,183452512,183454093,183455625	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	46467441	46467733	46467486	-	RAMPAGE_only	47	93	453	10.430245	5.709007	chr19	46467419	46467702	SINE|Alu|AluSg	-	chr19	46466490	46471407	PNMA8A|ENST00000438932.2	-	46466490,46469937,46471336	46468577,46471114,46471407	0.997792
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	130520836	130520963	130520836	+	RAMPAGE_only	23	37	168	3.868170	6.046511	chr7	130520448	130521122	DNA|TcMar-Tigger|MERX	+	chr7	130513375	130531027	MSTRG.23086.20	+	130513375,130528714	130524596,130531027	0.982143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	161089958	161090024	161090023	-	RAMPAGE_only	5	5	20	0.460496	4.037401	chr3	161089786	161090085	SINE|Alu|AluSx	+	chr3	161084982	161104549	B3GALNT1|ENST00000473285.5	-	161084982,161101138,161103426,161104318,161104506	161086788,161101233,161103517,161104406,161104549	0.950000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	123494119	123494143	123494119	-	RAMPAGE_only	4	4	10	0.230248	3.121928	chr3	123494040	123494287	DNA?|DNA?|MER124	-	chr3	123491553	123585185	HACD2|ENST00000383657.9	-	123491553,123500514,123502559,123528385,123567761,123582211,123584872	123494970,123500693,123502681,123528474,123567780,123582329,123585185	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	22758438	22758465	22758464	+	High_confidence	4	5	12	0.276298	3.418296	chr15	22758208	22758505	SINE|Alu|AluYm1	+	chr15	22758492	22764516	AC138649.1|ENST00000618814.1	+	22758492,22758818,22764223	22758525,22758921,22764516	0.583333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	11135557	11135607	11135583	+	RAMPAGE_only	8	11	29	0.667720	4.159200	chr6	11135545	11135913	DNA|TcMar-Tc2|Kanga1a	+	chr6	11094032	11138738	SMIM13|NM_001135575.1	+	11094032,11134402	11094389,11138738	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	58857640	58857676	58857663	+	RAMPAGE_only	4	4	20	0.460496	4.142664	chr5	58857630	58857684	LINE|RTE-BovB|MamRTE1	+	chr5	58583043	58859394	RAB3C|NM_138453.3	+	58583043,58617642,58726001,58825037,58851163	58583232,58617870,58726120,58825162,58859394	0.950000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	53305771	53305776	53305775	+	High_confidence	5	7	13	0.299323	3.238901	chr12	53305666	53305817	SINE|MIR|MIR3	+	chr12	53305695	53307108	C12orf10|ENST00000550199.5	+	53305695,53306197,53306679,53306965	53306060,53306320,53306861,53307108	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	7754076	7754077	7754076	+	High_confidence	17	18	20	0.460496	3.576618	chr4	7753883	7754236	LTR|ERVL-MaLR|THE1A	+	chr4	7754089	7778928	AFAP1-AS1|NR_026892.1	+	7754089,7772203	7754159,7778928	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	53546437	53546455	53546453	-	RAMPAGE_only	3	6	10	0.230248	2.947703	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	67605637	67605652	67605644	+	High_confidence	6	6	16	0.368397	3.750000	chr11	67605625	67605829	SINE|MIR|MIRc	+	chr11	67605652	67612554	NDUFV1|ENST00000647561.1	+	67605652,67606359,67608395,67608551,67609451,67610380,67610994,67611402,67611896,67612119,67612371	67606044,67607076,67608478,67608722,67609635,67610570,67611207,67611569,67611978,67612265,67612554	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	66438593	66438605	66438593	-	High_confidence	10	10	23	0.529571	3.827910	chr11	66438453	66438566	SINE|MIR|MIR	-	chr11	66435837	66438826	MRPL11|ENST00000534488.5	-	66435837,66437103,66437349,66438163,66438631	66436112,66437263,66437435,66438259,66438826	0.869565
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	57516547	57516639	57516588	+	RAMPAGE_only	7	7	58	1.335440	5.073330	chr15	57516424	57516656	DNA|hAT-Charlie|MER58A	-	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	49494850	49494852	49494850	-	RAMPAGE_only	8	12	14	0.322348	2.985228	chr16	49494837	49495000	DNA|DNA|Eulor11	-	chr16	49490786	49664225	ZNF423|ENST00000535559.5	-	49490786,49523623,49525362,49626169,49635659,49664090	49491304,49523739,49525494,49626254,49638874,49664225	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	42519283	42519303	42519287	+	RAMPAGE_only	9	9	22	0.506546	4.061482	chr22	42519127	42519409	LINE|L2|L2c	-	chr22	42553616	42558412	SERHL2|ENST00000447870.6	+	42553616,42554937,42555231,42555663,42556063,42556513,42558347	42553713,42555087,42555345,42555705,42556083,42556588,42558412	0.590909
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	139364669	139364741	139364711	+	RAMPAGE_only	5	6	42	0.967043	4.576492	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.523810
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	2726956	2726963	2726956	+	High_confidence	3	4	10	0.230248	2.947703	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	38931969	38932007	38932000	+	RAMPAGE_only	4	4	25	0.575621	4.053661	chr4	38931976	38932030	LINE|L2|L2a	-	chr4	38929098	38944033	FAM114A1|ENST00000508737.1	+	38929098,38931450,38932234,38935717,38940967,38943455	38929333,38931612,38932374,38935790,38941021,38944033	0.960000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	15657883	15657884	15657883	+	RAMPAGE_only	25	26	26	0.598645	3.733661	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.961538
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	13543814	13544046	13544045	-	RAMPAGE_only	10	14	179	4.121443	6.458174	chr12	13542496	13545457	LINE|L2|L2a	+	chr12	13537336	13980363	GRIN2B|ENST00000609686.3	-	13537336,13567024,13569829,13571803,13608602,13611724,13615113,13615492,13616454,13675744,13753316,13865797,13979927	13564639,13567263,13570017,13571964,13608832,13611850,13615267,13615664,13616657,13675859,13753915,13866226,13980363	0.994413
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	81170402	81170431	81170419	-	High_confidence	18	18	101	2.325507	5.437173	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.930693
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	127624261	127624286	127624261	+	RAMPAGE_only	4	4	14	0.322348	3.807355	chr5	127623227	127624265	LINE|L1|HAL1	+	chr5	127649020	127658630	CTXN3|NM_001048252.2	+	127649020,127653316,127657422	127649388,127653423,127658630	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	1455720	1455721	1455720	-	RAMPAGE_only	4	6	6	0.138149	2.584963	chr20	1455574	1455795	SINE|MIR|MIRc	+	chr20	1442161	1457090	NSFL1C|ENST00000461211.5	-	1442161,1445665,1452492,1453030,1454212,1454966,1455713	1443911,1445830,1452630,1453140,1454305,1455132,1457090	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	34244698	34244699	34244698	-	High_confidence	7	7	8	0.184199	2.521641	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244698	MSTRG.19618.3	-	34175821,34179012,34182679,34200820,34218294,34219916,34244615	34175957,34179097,34182867,34200921,34218450,34219950,34244698	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	38820958	38821183	38821132	-	RAMPAGE_only	32	33	257	5.917380	5.203872	chr22	38820896	38821193	SINE|Alu|AluSz	-	chr22	38818457	38843634	MSTRG.16691.2	-	38818457,38823082,38826499,38828286,38843234	38822833,38823262,38826747,38828509,38843634	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	41466505	41466522	41466505	+	RAMPAGE_only	7	7	12	0.276298	3.418296	chr13	41466397	41466689	SINE|Alu|AluSx	-	chr13	41464114	41468844	RGCC|ENST00000487837.1	+	41464114,41466822,41468775	41464180,41466930,41468844	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	184537553	184537596	184537595	-	High_confidence	21	21	161	3.706997	5.547663	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.826087
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	26506196	26506839	26506808	-	RAMPAGE_only	33	39	753	17.337692	6.957160	chr8	26506707	26506876	LINE|L2|L2c	+	chr8	26504679	26513967	PNMA2|NM_007257.5	-	26504679,26509547,26513815	26509243,26509677,26513967	0.998672
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50785201	50785278	50785277	+	RAMPAGE_only	9	11	96	2.210383	4.805087	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.989583
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	138594832	138594845	138594835	-	High_confidence	5	5	16	0.368397	3.327820	chr3	138594820	138595293	LTR|Gypsy|MamGypLTR3	-	chr3	138570434	138594538	CEP70|ENST00000470159.5	-	138570434,138571033,138571265,138572858,138591853,138594443	138570498,138571157,138571356,138572932,138591956,138594538	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	21845524	21845543	21845542	+	RAMPAGE_only	5	5	14	0.322348	2.950212	chr6	21845434	21845600	DNA?|DNA?|Eulor6D	-	chr6	21898719	22214505	CASC15|ENST00000444265.6	+	21898719,21909469,21978944,22020338,22056545,22063019,22110746,22191566,22194044,22205184,22214306	21898784,21909603,21979062,22020542,22056690,22063240,22110920,22191656,22194116,22205259,22214505	0.785714
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	81154211	81154222	81154221	-	High_confidence	3	3	7	0.161174	2.584963	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	47743725	47743747	47743727	+	High_confidence	32	55	92	2.118284	5.849835	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.684783
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	115663914	115663915	115663914	+	RAMPAGE_only	17	17	17	0.391422	3.734522	chr3	115663952	115664106	SINE|MIR|MIR	+	chr3	115623509	115721490	GAP43|ENST00000393780.3	+	115623509,115663520,115676012,115720793	115623719,115663916,115676610,115721490	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	73748000	73748051	73748021	-	High_confidence	4	4	20	0.460496	3.784184	chr8	73748021	73748120	SINE|MIR|MIR	+	chr8	73549600	73747708	STAU2|NM_001164384.1	-	73549600,73582769,73595165,73603725,73613743,73615674,73617291,73673106,73688653,73738283,73747386	73552319,73582830,73595297,73603863,73613956,73615782,73617451,73673242,73688813,73738349,73747708	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	50226714	50226747	50226714	+	High_confidence	32	36	228	5.249660	5.883245	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	0.942982
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	47143650	47143690	47143650	-	High_confidence	3	3	15	0.345372	3.640224	chr16	47143450	47143941	LTR|ERV1|LTR12C	+	chr16	47081633	47143709	NETO2|ENST00000303155.9	-	47081633,47086225,47109482,47122656,47122888,47128324,47129223,47131968,47143578	47083801,47086339,47109711,47122784,47122912,47128573,47129364,47132025,47143709	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	15757796	15757823	15757796	+	RAMPAGE_only	4	4	17	0.391422	3.286896	chr8	15757770	15757946	SINE|MIR|MIRc	+	chr8	15540278	15764629	TUSC3|ENST00000510836.5	+	15540278,15623079,15650696,15659506,15662155,15673746,15743537,15764202	15540568,15623249,15650814,15659647,15662296,15673836,15743612,15764629	0.705882
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50757202	50757261	50757260	+	High_confidence	3	3	21	0.483521	4.201841	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.523810
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	153674285	153674288	153674285	-	High_confidence	4	4	8	0.184199	2.750000	chrX	153674234	153674570	LINE|L2|L2a	+	chrX	153669767	153674325	PNCK|ENST00000370142.5	-	153669767,153670449,153670743,153670917,153671077,153671284,153671552,153671879,153672125,153672565,153673008,153674273	153670130,153670594,153670831,153670996,153671190,153671433,153671672,153672018,153672200,153672697,153673078,153674325	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	64449550	64449552	64449550	+	RAMPAGE_only	4	7	10	0.230248	2.921928	chr12	64449537	64449603	DNA|hAT-Charlie|Charlie4z	+	chr12	64404349	64451127	XPOT|ENST00000332707.9	+	64404349,64409961,64414906,64416697,64418045,64418875,64420069,64420352,64421234,64423004,64423181,64424598,64425037,64425337,64425814,64428050,64430048,64431537,64433413,64434506,64434793,64435626,64439243,64445074,64448104	64404804,64410095,64414989,64416754,64418115,64419094,64420254,64420521,64421471,64423043,64423244,64424723,64425182,64425457,64425909,64428120,64430287,64431823,64433603,64434623,64434909,64435674,64439315,64445131,64451127	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	74203043	74203060	74203059	+	High_confidence	4	4	13	0.299323	2.565448	chr17	74202947	74203091	SINE|Alu|FLAM_C	-	chr17	74203581	74209880	RPL38|ENST00000439590.6	+	74203581,74203917,74204129,74209186,74209803	74203710,74203958,74204190,74209309,74209880	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	110334119	110334131	110334130	+	RAMPAGE_only	4	5	11	0.253273	3.095795	chr12	110334168	110334585	LINE|L2|L2a	+	chr12	110292048	110346621	ATP2A2|ENST00000548169.2	+	110292048,110296598,110326389,110327552,110332596,110333180,110334011,110339280,110339502,110340658,110342227,110343231,110344885,110345248,110346000,110346200	110292124,110296737,110326475,110328017,110332685,110333283,110334143,110339403,110339721,110340994,110342448,110343434,110344971,110345382,110346118,110346621	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	125228895	125228910	125228909	+	RAMPAGE_only	3	3	6	0.138149	2.584963	chr8	125228776	125228977	SINE|MIR|MIRb	-	chr8	125124143	125367118	NSMCE2|ENST00000517315.1	+	125124143,125126965,125151170,125182102,125357218,125357711,125366767	125124217,125127067,125151277,125182256,125357319,125357818,125367118	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	71728528	71728554	71728553	-	High_confidence	7	7	13	0.299323	3.392747	chr3	71728377	71728554	SINE|MIR|MIR3	-	chr3	71684619	71728637	EIF4E3|ENST00000468147.5	-	71684619,71690009,71693874,71710411,71728475	71684728,71690165,71693941,71710484,71728637	0.538462
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	133952729	133952730	133952729	+	High_confidence	7	7	7	0.161174	2.521641	chr6	133952660	133952828	DNA|hAT-Charlie|Charlie2a	+	chr6	133953162	133987500	TBPL1|NM_004865.3	+	133953162,133980081,133982567,133982816,133984375,133984576,133986960	133953425,133980260,133982650,133982880,133984479,133984671,133987500	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	44299457	44299474	44299473	+	High_confidence	3	3	7	0.161174	2.584963	chr21	44299423	44299490	LINE|L1|L1ME3A	-	chr21	44300033	44327381	PFKL|NM_001002021.2	+	44300033,44304274,44305256,44305799,44306680,44311005,44312104,44312977,44313637,44313912,44316243,44316431,44318469,44319350,44320083,44321728,44322132,44322961,44323765,44324490,44324855,44325152,44325960,44326158,44326714	44300190,44304455,44305417,44305935,44306754,44311083,44312294,44313143,44313682,44314021,44316339,44316524,44318595,44319415,44320147,44321875,44322203,44323049,44323918,44324655,44324917,44325264,44326060,44326264,44327381	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	71417266	71417277	71417266	+	RAMPAGE_only	4	4	9	0.207223	2.500000	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	73712381	73713512	73712542	-	RAMPAGE_only	51	53	1210	27.860036	7.599724	chr14	73712255	73712562	DNA|hAT-Charlie|Charlie15b	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	0.998347
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	118825541	118826075	118825652	+	RAMPAGE_only	18	18	430	9.900674	6.164771	chrX	118824858	118825775	LTR|Gypsy|MamGyp-int	+	chrX	118823789	118826968	ZCCHC12|ENST00000310164.2	+	118823789,118824338,118824588,118825130	118824005,118824390,118824713,118826968	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	100363162	100363166	100363162	+	High_confidence	6	6	12	0.276298	2.855389	chr1	100362798	100363434	LTR|ERV1|LTR9	-	chr1	100363160	100484639	CDC14A|ENST00000646563.1	+	100363160,100377545,100390731,100424221,100439931,100442933,100462650,100467955,100484291	100363225,100377621,100390824,100424301,100439998,100442996,100462881,100468094,100484639	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	28933988	28934018	28934017	+	RAMPAGE_only	7	8	18	0.414447	3.572431	chr15	28933748	28934022	LINE|L2|L2c	-	chr15	28921636	29118311	APBA2|ENST00000558259.5	+	28921636,28995752,29053844,29074920,29076054,29093074,29094277,29098489,29101598,29105378,29106606,29108269,29113875,29117061	28921749,28995806,29054835,29075001,29076091,29093220,29094313,29098576,29101784,29105558,29106819,29108389,29114016,29118311	0.555556
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	49823288	49823296	49823288	+	RAMPAGE_only	2	2	6	0.138149	2.584963	chr17	49823326	49823426	LINE|L2|L2c	+	chr17	49824481	49827762	KAT7|ENST00000503101.1	+	49824481,49825999,49826692,49827400	49824740,49826146,49826799,49827762	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	87221110	87221128	87221127	-	High_confidence	2	2	8	0.184199	2.521641	chr4	87221115	87221417	SINE|Alu|AluSc5	+	chr4	87160102	87220608	KLHL8|ENST00000273963.9	-	87160102,87163877,87170078,87170446,87176756,87178476,87183202,87185250,87195323,87220417	87163642,87164079,87170238,87170615,87176868,87178620,87183389,87185799,87195690,87220608	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	130017256	130017259	130017256	-	High_confidence	5	5	11	0.253273	3.459432	chr8	130017097	130017284	LINE|L2|L2a	-	chr8	129862249	130017129	FAM49B|ENST00000523993.5	-	129862249,129871374,129879388,129903311,129904498,129970942,130017017	129862334,129871496,129879471,129903350,129904585,129970995,130017129	0.636364
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	35902628	35902629	35902628	+	RAMPAGE_only	4	5	7	0.161174	2.521641	chr7	35902620	35902824	SINE|MIR|MIRc	+	chr7	35890743	35903189	SEPT7|ENST00000485569.1	+	35890743,35898214,35903075	35890793,35898383,35903189	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	3342657	3342682	3342657	+	RAMPAGE_only	2	2	9	0.207223	2.750000	chr4	3342582	3342705	SINE|MIR|MIR	-	chr4	3318038	3378591	RGS12|ENST00000511805.5	+	3318038,3342936,3378169	3318051,3343053,3378591	0.555556
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	22825057	22825147	22825145	+	RAMPAGE_only	18	22	66	1.519638	5.082069	chr15	22825034	22825368	DNA|TcMar-Tigger|Tigger3a	-	chr15	22786766	22826076	NIPA1|ENST00000559448.5	+	22786766,22810748,22812162,22813632,22820312,22823727	22786834,22810796,22812253,22813714,22820473,22826076	0.954545
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	74969716	74969731	74969716	+	RAMPAGE_only	3	4	9	0.207223	2.947703	chr10	74969693	74969726	LINE|L2|L2a	-	chr10	74842619	75022125	KAT6B|ENST00000648369.1	+	74842619,74959969,74969659,74970019,74972506,74975398,74977315,74979223,74981786,74985079,75020581,75021125,75021880	74843478,74960078,74969775,74970101,74972639,74976330,74977437,74979339,74981928,74985241,75020813,75021285,75022125	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	5726228	5726256	5726228	-	High_confidence	5	5	17	0.391422	3.577820	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.588235
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	47500871	47500900	47500871	+	High_confidence	4	4	19	0.437472	3.681881	chr20	47500403	47500991	LINE|L2|L2a	-	chr20	47501856	47656877	NCOA3|NM_006534.3	+	47501856,47583182,47622228,47623910,47625380,47627001,47627560,47627921,47633495,47634047,47635321,47635890,47637647,47639007,47639576,47639924,47642212,47647072,47649004,47650981,47652405,47652930,47653405	47502019,47583261,47622330,47624083,47625481,47627176,47627749,47628023,47633636,47634195,47635713,47636762,47637783,47639202,47639822,47640051,47642384,47647366,47649097,47651276,47652580,47653072,47656877	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	13779762	13779763	13779762	-	High_confidence	11	12	15	0.345372	3.807355	chr16	13779489	13780125	LTR|ERV1|LTR9	+	chr16	13730253	13779760	U95743.1|ENST00000576944.1	-	13730253,13777719,13778900,13779697	13730436,13777844,13779095,13779760	0.533333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	122913054	122913077	122913063	-	High_confidence	4	4	14	0.322348	3.392747	chr9	122912996	122913067	LINE|L2|L2b	+	chr9	122908055	122913328	ZBTB6|NM_006626.5	-	122908055,122913250	122912081,122913328	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	43537088	43537095	43537094	-	RAMPAGE_only	5	5	9	0.207223	3.000000	chr3	43536883	43537057	LINE|L1|L1ME1	-	chr3	43366642	43555411	MSTRG.17206.6	-	43366642,43432610,43549719,43551471,43555277	43366974,43432727,43549848,43551566,43555411	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	66550394	66550407	66550394	-	High_confidence	5	5	17	0.391422	3.734522	chr16	66550352	66550498	SINE|MIR|MIRb	-	chr16	66508002	66550412	TK2|NR_073520.1	-	66508002,66513730,66517135,66517788,66528993,66531379,66536963,66541878,66548977	66512066,66513811,66517215,66517877,66529067,66531469,66537017,66541953,66550412	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	48644913	48644938	48644913	-	RAMPAGE_only	23	23	71	1.634762	5.113899	chr19	48644772	48644894	SINE|Alu|AluSx	-	chr19	48637941	48646312	CA11|NR_136241.1	-	48637941,48638239,48639304,48639548,48639787,48640094,48644426,48645402,48645565	48638144,48639053,48639459,48639621,48639883,48640280,48644569,48645477,48646312	0.535211
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	51814931	51815851	51815125	+	RAMPAGE_only	35	48	1125	25.902926	6.445905	chr15	51814979	51815278	SINE|Alu|AluSq2	+	chr15	51751666	51816368	MSTRG.8270.4	+	51751666,51766372,51767070,51773711,51776931,51781043,51782720,51798196,51806376,51808419	51751712,51766567,51768418,51773834,51777018,51781174,51782828,51798340,51806521,51816368	0.999111
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	32479849	32479861	32479860	+	RAMPAGE_only	3	3	7	0.161174	2.584963	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32444473	32481471	PSMD11|ENST00000457654.6	+	32444473,32446944,32454494,32464048,32464520,32468998,32473800,32474763,32477520,32479250,32479850,32480145,32480488	32444614,32447046,32454619,32464120,32464578,32469193,32473945,32474824,32477583,32479376,32479886,32480197,32481471	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	183452114	183452138	183452137	+	High_confidence	6	6	19	0.437472	3.794653	chr3	183452059	183452354	SINE|Alu|AluSz6	-	chr3	183451740	183455335	LINC00888|ENST00000487386.1	+	183451740,183452370,183454014,183455190	183451822,183452485,183454093,183455335	0.578947
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	27509883	27509918	27509917	+	RAMPAGE_only	3	4	16	0.368397	3.875000	chr10	27509948	27510212	LINE|L2|L2c	+	chr10	27504618	27537966	RAB18|ENST00000423465.1	+	27504618,27504978,27509874,27526827,27531528,27532506,27533734,27533927,27537875	27504724,27505190,27509930,27526889,27531615,27532579,27533853,27533994,27537966	0.812500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	88751376	88751397	88751396	-	RAMPAGE_only	3	3	11	0.253273	3.095795	chr11	88747848	88753722	LINE|L1|L1PA11	+	chr11	88507809	89048022	GRM5|ENST00000305432.9	-	88507809,88567052,88590600,88597183,88604717,88653167,88849905,89047211	88509504,88567992,88590727,88597352,88604964,88653403,88850155,89048022	0.545455
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	25319908	25319958	25319908	-	RAMPAGE_only	13	13	56	1.289390	5.208966	chr20	25319592	25319927	LTR|ERV1|LTR65	+	chr20	25306832	25310472	ABHD12|ENST00000481556.1	-	25306832,25307965,25308456,25309445,25310199	25306915,25308045,25308494,25309575,25310472	0.785714
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	112227125	112227160	112227159	+	High_confidence	4	4	16	0.368397	3.750000	chr11	112227196	112227258	SINE|MIR|MIR	+	chr11	112226431	112233810	PTS|ENST00000525803.1	+	112226431,112228593,112233162,112233431	112226526,112228673,112233233,112233810	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	121314002	121314021	121314002	+	RAMPAGE_only	4	4	16	0.368397	3.077820	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	32131769	32131817	32131816	+	RAMPAGE_only	4	4	27	0.621670	3.703465	chr13	32131824	32131914	DNA|hAT-Ac|OldhAT1	+	chr13	32031554	32296613	MSTRG.6511.12	+	32031554,32078833,32101962,32117333,32124285,32124601,32124794,32131671,32134903,32135084,32136870,32147281,32147838,32149747,32155490,32157272,32161143,32171011,32173366,32175545,32178176,32178843,32179674,32182976,32184599,32184975,32186259,32187545,32194142,32201940,32202355,32208852,32209584,32210865,32212291,32218748,32224234,32224932,32225788,32228455,32231178,32234573,32236077,32237378,32239251,32239710,32244041,32247322,32249525,32251877,32254223,32261615,32262313,32265449,32267169,32274841,32276463,32278464,32287866,32289632,32294367,32295201	32031865,32079033,32102016,32117473,32124376,32124681,32124875,32131840,32134996,32135183,32136972,32147385,32147947,32149834,32155662,32157405,32161251,32171270,32173549,32175632,32178436,32179033,32179799,32183034,32184691,32185148,32186420,32187656,32194297,32202040,32202527,32209109,32209731,32211034,32212382,32218831,32224385,32225036,32225974,32228654,32231300,32234761,32236172,32237986,32239349,32239881,32244182,32247502,32249687,32251952,32254394,32261816,32262475,32265616,32267359,32274991,32276562,32278548,32287884,32289743,32294570,32296613	0.740741
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	58306092	58306159	58306127	+	High_confidence	2	2	15	0.345372	3.182006	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.533333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	49771616	49771673	49771672	+	RAMPAGE_only	5	5	26	0.598645	4.392747	chr14	49771716	49772002	SINE|Alu|AluSz	+	chr14	49768167	49783122	KLHDC2|ENST00000557247.1	+	49768167,49771593,49774560,49777838,49778177,49778410,49779594,49779747,49780212,49782369,49782829	49768621,49771673,49774678,49777954,49778259,49778494,49779675,49779806,49780322,49782457,49783122	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	6200559	6200658	6200657	-	High_confidence	15	15	103	2.371557	4.007730	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.980583
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	101466859	101466892	101466890	-	RAMPAGE_only	2	3	10	0.230248	2.725481	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	17208512	17208564	17208558	+	RAMPAGE_only	8	8	35	0.805869	4.510709	chr11	17208523	17208605	SINE|MIR|MIRc	-	chr11	17260339	17349980	NUCB2|ENST00000646648.1	+	17260339,17269184,17276007,17282788,17295323,17296103,17301743,17309571,17310824,17311184,17311871,17312027,17315385,17330126,17330901,17337347,17349344	17260501,17269331,17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17337534,17349980	0.600000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	35899251	35899275	35899251	+	RAMPAGE_only	5	8	27	0.621670	3.555085	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35902479	35904271	HCST|NM_014266.3	+	35902479,35903350,35903771,35904119	35902636,35903416,35903903,35904271	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	40954688	40954722	40954721	+	High_confidence	3	3	14	0.322348	3.026987	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954710	41141048	LOC644919|NR_109758.1	+	40954710,40962789,40974339,41140833	40954952,40962842,40974390,41141048	0.642857
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	94996905	94996906	94996905	-	High_confidence	12	12	12	0.276298	3.418296	chr12	94996903	94997043	SINE|MIR|MIR3	+	chr12	94971331	94997447	NDUFA12|ENST00000550187.5	-	94971331,94994169,94997307	94971620,94994257,94997447	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	83208487	83208498	83208488	-	High_confidence	3	4	10	0.230248	3.169925	chr15	83208475	83208527	SINE|MIR|MIRb	-	chr15	83127752	83208018	HDGFL3|ENST00000299633.6	-	83127752,83151214,83157414,83157902,83163998,83207330	83139275,83151361,83157573,83158041,83164075,83208018	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	24580612	24580623	24580622	+	High_confidence	8	9	22	0.506546	4.186704	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	33141962	33141981	33141962	-	RAMPAGE_only	6	6	10	0.230248	2.921928	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33141430	33161491	CSTF3|NM_001033505.1	-	33141430,33141884,33161298	33141762,33141986,33161491	0.600000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	150640347	150640359	150640347	+	High_confidence	5	5	9	0.207223	3.169925	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	96934331	96934354	96934331	+	RAMPAGE_only	3	3	17	0.391422	3.750000	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.882353
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	95042501	95042545	95042501	-	RAMPAGE_only	2	2	10	0.230248	2.721928	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.600000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	33909085	33909091	33909085	-	High_confidence	4	4	9	0.207223	2.750000	chr21	33908880	33909038	DNA|hAT-Charlie|MER5A1	-	chr21	33903455	33909095	ATP5PO|ENST00000418933.1	-	33903455,33903934,33907340,33909081	33903656,33904021,33907453,33909095	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	138233823	138233824	138233823	+	RAMPAGE_only	11	11	11	0.253273	2.845351	chr9	138233782	138233910	LINE|L1|L1MC4	-	chr9	138217067	138252994	FAM157B|ENST00000446912.3	+	138217067,138220781,138230907,138243619,138244793,138248215,138249314,138251537,138252688	138217230,138221328,138231103,138243729,138244925,138248431,138249380,138251596,138252994	0.818182
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	35899347	35899360	35899347	+	RAMPAGE_only	9	11	21	0.483521	3.272804	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35902479	35904271	HCST|NM_014266.3	+	35902479,35903350,35903771,35904119	35902636,35903416,35903903,35904271	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	67181672	67181689	67181672	-	RAMPAGE_only	4	4	12	0.276298	3.095795	chr16	67181600	67181913	LINE|L2|L2a	+	chr16	67176770	67183586	MSTRG.9807.9	-	67176770,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178107,67178504,67179562,67179958,67180666,67181697,67183586	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	66282749	66282776	66282749	+	High_confidence	5	6	23	0.529571	3.936180	chr11	66282790	66282925	SINE|MIR|MIR3	+	chr11	66282593	66283750	CNIH2|ENST00000531936.1	+	66282593,66283034,66283247,66283569	66282780,66283147,66283391,66283750	0.869565
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	29550826	29550833	29550826	-	RAMPAGE_only	4	4	11	0.253273	2.921928	chr22	29550799	29551148	DNA|hAT-Charlie|MER113	+	chr22	29508330	29549157	THOC5|ENST00000358079.8	-	29508330,29511105,29512020,29517028,29517262,29519005,29520007,29520997,29525837,29528077,29528425,29528936,29531830,29536623,29539329,29542858,29543414,29544459,29549051	29508520,29511296,29512136,29517116,29517366,29519120,29520104,29521099,29525946,29528177,29528466,29529239,29531963,29536738,29539476,29542956,29543542,29544603,29549157	0.818182
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	197899862	197899863	197899862	-	RAMPAGE_only	6	6	8	0.184199	3.000000	chr3	197899702	197901148	LINE|L1|L1M1	+	chr3	197889412	197913034	IQCG|ENST00000485787.1	-	197889412,197892627,197912674,197912853	197889714,197892759,197912749,197913034	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	199955964	199956020	199955980	+	High_confidence	7	7	41	0.944018	4.774243	chr2	199955996	199956125	LINE|L1|L1MDb	+	chr2	199955820	200008540	MAIP1|ENST00000435773.2	+	199955820,199959267,199959753,200005742,200008465	199956248,199959339,199959880,200005777,200008540	0.682927
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	102419929	102419948	102419947	-	High_confidence	2	3	8	0.184199	2.807355	chr10	102419931	102420131	SINE|MIR|MIRc	+	chr10	102402616	102419934	PSD|NM_001270965.1	-	102402616,102403841,102404582,102404897,102405182,102405345,102407222,102410857,102411057,102411706,102412146,102412380,102413768,102414862,102416016,102416384,102418700,102419873	102403430,102403985,102404727,102405055,102405253,102405536,102407266,102410947,102411116,102411819,102412227,102412575,102414197,102415229,102416119,102417121,102418759,102419934	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	128684459	128684477	128684459	-	RAMPAGE_only	5	5	17	0.391422	3.734522	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.588235
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	9363399	9363419	9363399	+	High_confidence	4	4	15	0.345372	2.923231	chr3	9363443	9363535	LINE|L2|L2b	+	chr3	9363097	9384870	THUMPD3|ENST00000515662.6	+	9363097,9365015,9366907,9371059,9374515,9377818,9380502,9383198,9384211,9384523	9363728,9365320,9366985,9371536,9374646,9377888,9380618,9383309,9384335,9384870	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	46266515	46266542	46266534	-	High_confidence	6	6	16	0.368397	3.506891	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.937500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	197899949	197899960	197899957	-	RAMPAGE_only	5	6	15	0.345372	3.640224	chr3	197899702	197901148	LINE|L1|L1M1	+	chr3	197889412	197913034	IQCG|ENST00000485787.1	-	197889412,197892627,197912674,197912853	197889714,197892759,197912749,197913034	0.733333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	119179128	119179187	119179186	+	High_confidence	7	7	23	0.529571	3.015139	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.956522
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	26505880	26505968	26505880	-	RAMPAGE_only	33	37	103	2.371557	5.074674	chr8	26505710	26505993	SINE|Alu|AluSx1	+	chr8	26504679	26513967	PNMA2|NM_007257.5	-	26504679,26509547,26513815	26509243,26509677,26513967	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	111097310	111097352	111097351	-	High_confidence	5	5	24	0.552596	3.918296	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	131147614	131147753	131147751	+	RAMPAGE_only	21	36	82	1.888035	4.991355	chr2	131147516	131147813	SINE|Alu|AluY	+	chr2	131104943	131149852	PLEKHB2|ENST00000234115.10	+	131104943,131120933,131125752,131126683,131130720,131132901,131140169,131146636	131105398,131120978,131125905,131126786,131130760,131132991,131140275,131149852	0.951220
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	44439853	44439897	44439853	-	High_confidence	2	2	10	0.230248	2.503258	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421126	44439917	C3orf86|ENST00000636468.1	-	44421126,44439796	44421813,44439917	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	158632934	158632963	158632962	+	RAMPAGE_only	3	3	10	0.230248	2.646439	chr6	158632785	158633081	SINE|Alu|AluJb	+	chr6	158536435	158635428	TMEM181|ENST00000367090.3	+	158536435,158573419,158580939,158583953,158585303,158589671,158605266,158607243,158608332,158608658,158623549,158625103,158625702,158628407,158629729,158631322,158631809	158536865,158573523,158580995,158584044,158585425,158589782,158605347,158607343,158608463,158608750,158623607,158625206,158625754,158628490,158629819,158631389,158635428	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	132924576	132924614	132924576	-	RAMPAGE_only	2	2	11	0.253273	3.277613	chr12	132924226	132924817	LINE|L1|L1MEc	-	chr12	132921432	132956282	ZNF605|NM_183238.3	-	132921432,132933034,132945620,132948147,132956242	132927162,132933155,132945797,132948270,132956282	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	70250796	70250857	70250796	-	RAMPAGE_only	6	6	27	0.621670	3.573661	chr16	70250712	70250826	SINE|Alu|AluJr	+	chr16	70246777	70251930	EXOSC6|ENST00000435634.2	-	70246777	70251930	0.925926
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	28566351	28566352	28566351	+	High_confidence	10	10	14	0.322348	3.093069	chr2	28566276	28566363	LINE|RTE-X|L5	+	chr2	28566442	28578147	PLB1|ENST00000485642.1	+	28566442,28573196,28578106	28566839,28573305,28578147	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	95041557	95041608	95041607	-	RAMPAGE_only	9	9	42	0.967043	4.540240	chr1	95041410	95041646	SINE|Alu|AluJo	+	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.928571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	102947726	102947729	102947726	-	RAMPAGE_only	4	5	8	0.184199	2.750000	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	147559948	147559949	147559948	+	High_confidence	11	11	14	0.322348	2.549523	chr5	147559899	147560053	DNA|hAT-Charlie|MER5A1	-	chr5	147559993	147662009	JAKMIP2-AS1|NR_038902.1	+	147559993,147594359,147595439,147660452	147560137,147594477,147595540,147662009	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	75376726	75376786	75376726	-	RAMPAGE_only	12	12	60	1.381489	4.800548	chr16	75376668	75377149	LTR|ERV1|MER66B	+	chr16	75293709	75433485	CFDP1|ENST00000283882.3	-	75293709,75305023,75395089,75411824,75412534,75414577,75433288	75294042,75305182,75395209,75411952,75412754,75414695,75433485	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	34988764	34988792	34988764	-	High_confidence	14	15	80	1.841986	5.172827	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.862500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	169925840	169925859	169925858	-	RAMPAGE_only	5	5	13	0.299323	3.026987	chr1	169925820	169925881	SINE|5S-Deu-L2|AmnSINE1	+	chr1	169921328	170068915	KIFAP3|NM_001204517.1	-	169921328,169954010,169961045,169972512,169978084,169981971,169982701,169983269,169984581,169992154,170016461,170024417,170031885,170034371,170035453,170038289,170039232,170046711,170055304,170067503	169921781,169954110,169961235,169972598,169978183,169982097,169982867,169983382,169984690,169992255,170016624,170024596,170031984,170034496,170035553,170038431,170039288,170046866,170055436,170068915	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	171268995	171268996	171268995	+	RAMPAGE_only	4	4	6	0.138149	2.584963	chr1	171268815	171269160	LTR|ERVL-MaLR|THE1B	+	chr1	171275345	171283196	FMO1|ENST00000472893.1	+	171275345,171278728,171280785,171281977,171283143	171275508,171278871,171280985,171282065,171283196	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	103129616	103129686	103129637	+	High_confidence	3	3	27	0.621670	4.469670	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	0.851852
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	64990025	64990036	64990025	-	RAMPAGE_only	4	4	13	0.299323	3.418296	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.846154
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	155679929	155679930	155679929	-	High_confidence	10	10	10	0.230248	2.721928	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	57200897	57200899	57200897	+	RAMPAGE_only	3	5	7	0.161174	2.807355	chr4	57200605	57200905	DNA|hAT-Charlie|MER102b	-	chr4	57179144	57205510	IGFBP7-AS1|ENST00000515865.1	+	57179144,57201132,57201785,57204477,57205073	57179284,57201215,57201820,57204593,57205510	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	21075853	21075856	21075853	+	High_confidence	28	28	48	1.105192	4.502167	chr17	21075733	21075870	LINE|L2|L2a	-	chr17	21075555	21090615	LINC01563|ENST00000456235.1	+	21075555,21090267	21075957,21090615	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	193090063	193090072	193090071	+	RAMPAGE_only	2	2	6	0.138149	2.584963	chr1	193089802	193090103	SINE|Alu|AluSc5	-	chr1	193069015	193091777	MSTRG.2032.11	+	193069015,193075819,193076500,193076912,193081363,193082185,193082561,193084578,193084988	193069634,193076040,193076647,193077050,193081480,193082299,193082708,193084657,193091777	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100903704	100903705	100903704	-	High_confidence	6	6	6	0.138149	2.584963	chr14	100903521	100903697	SINE|MIR|MIRb	-	chr14	100879752	100903722	RTL1|ENST00000649591.1	-	100879752,100893443,100903290,100903604	100884874,100893505,100903386,100903722	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	1997217	1997336	1997253	-	RAMPAGE_only	5	7	57	1.312415	4.655075	chr2	1997219	1997369	SINE|MIR|MIRb	+	chr2	1789147	1979220	MYT1L|ENST00000650399.1	-	1789147,1792320,1801695,1809075,1839148,1840759,1851640,1886538,1887487,1889240,1892036,1942981,1979164	1792007,1792464,1801799,1809167,1839370,1840843,1851703,1886607,1887609,1889477,1892287,1943334,1979220	0.929825
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	25034857	25035035	25034989	+	RAMPAGE_only	13	15	166	3.822121	4.934451	chr15	25034892	25035089	DNA|hAT-Charlie|MER58A	-	chr15	25031872	25036490	PWAR6|ENST00000552334.1	+	25031872	25036490	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	165683705	165683752	165683714	+	RAMPAGE_only	6	6	33	0.759819	3.839108	chr2	165683635	165683720	LINE|L2|L2b	-	chr2	165572338	165689407	CSRNP3|ENST00000342316.8	+	165572338,165595042,165657760,165676311,165678700	165572587,165595213,165658020,165676608,165689407	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	32403105	32403169	32403148	-	RAMPAGE_only	81	86	270	6.216702	6.143795	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.996296
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	81664294	81664349	81664342	+	RAMPAGE_only	32	52	115	2.647855	4.433565	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.991304
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	196897631	196897644	196897643	+	RAMPAGE_only	5	5	15	0.345372	3.324863	chr1	196897152	196897920	LTR|ERV1|LTR1B1	-	chr1	196888081	196918633	CFHR4|ENST00000251424.8	+	196888081,196902417,196912739,196914494,196914955,196918209	196888208,196902615,196912922,196914671,196915138,196918633	0.533333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	78054835	78054855	78054854	+	High_confidence	96	103	245	5.641082	6.654785	chr13	78054705	78054994	LINE|L1|L1M4b	-	chr13	78054844	78578714	RNF219-AS1|ENST00000605996.5	+	78054844,78189607,78274252,78363571,78578476	78055064,78189696,78274337,78363731,78578714	0.632653
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	82139889	82139911	82139910	-	RAMPAGE_only	3	3	7	0.161174	2.584963	chr15	82139719	82139903	LINE|L1|L1ME3G	-	chr15	82130219	82262528	EFL1|NM_001322845.1	-	82130219,82138657,82151464,82157712,82163852,82214716,82219651,82220077,82225164,82227449,82228190,82229033,82230847,82238306,82240417,82241269,82252690,82259087,82261687,82262136	82130561,82138842,82152423,82157860,82163984,82214855,82219818,82220229,82225264,82227572,82228327,82229110,82230971,82238521,82240555,82241403,82252775,82259155,82261797,82262528	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	65570509	65570536	65570521	+	High_confidence	28	47	119	2.739954	6.187416	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.647059
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	28681084	28681085	28681084	+	RAMPAGE_only	8	8	9	0.207223	2.750000	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	54066279	54066282	54066281	+	RAMPAGE_only	4	7	9	0.207223	2.750000	chr2	54066093	54066455	LTR|ERVL-MaLR|THE1D	+	chr2	54115272	54305300	ACYP2|NM_001320589.1	+	54115272,54135452,54138638,54267295,54304687	54115756,54135469,54138748,54267365,54305300	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	44912594	44912629	44912594	-	High_confidence	8	8	21	0.483521	3.748995	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	123382153	123382178	123382153	-	RAMPAGE_only	3	4	10	0.230248	3.321928	chr5	123381886	123382104	LINE|L1|L1ME4b	-	chr5	123344884	123423303	CEP120|ENST00000306467.9	-	123344884,123349943,123364495,123372649,123377373,123378335,123382110,123382736,123382985,123384950,123386517,123388431,123389923,123391109,123393299,123399135,123412398,123416009,123418358,123422949	123346753,123350089,123364594,123372772,123377535,123378428,123382200,123382889,123383082,123385133,123386667,123388606,123390140,123391337,123393497,123399284,123412540,123416124,123418515,123423303	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	103353930	103353931	103353930	+	High_confidence	8	8	9	0.207223	2.500000	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	138133142	138133163	138133162	-	RAMPAGE_only	4	5	11	0.253273	2.646439	chr5	138133098	138133404	SINE|Alu|AluY	-	chr5	138115171	138139415	NME5|ENST00000265191.3	-	138115171,138118817,138128478,138129262,138138651,138139370	138115764,138118936,138128579,138129468,138138785,138139415	0.545455
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	103919512	103919534	103919533	-	High_confidence	6	6	17	0.391422	3.750000	chrX	103919452	103919627	SINE|MIR|MIRb	-	chrX	103917410	103919548	TMSB15B-AS1|ENST00000614615.1	-	103917410,103918408,103918831,103919424	103918225,103918460,103919080,103919548	0.529412
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	18794054	18794078	18794077	+	High_confidence	17	17	50	1.151241	5.238563	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	7138546	7138549	7138546	+	RAMPAGE_only	20	20	31	0.713770	3.676466	chr8	7138366	7138724	LTR|ERVL-MaLR|THE1B	+	chr8	7109286	7187316	AF228730.5|ENST00000649959.1	+	7109286,7112355,7119281,7152717,7186283	7109616,7112518,7119400,7152806,7187316	0.935484
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	166973358	166973359	166973358	-	RAMPAGE_only	9	9	14	0.322348	3.664498	chr1	166973297	166973476	SINE|MIR|MIR3	+	chr1	166918865	166975031	MSTRG.1838.4	-	166918865,166920706,166922592,166927066,166935300,166936590,166939513,166956732,166957768,166972901	166919390,166921379,166922809,166927180,166935477,166936737,166939570,166956852,166958101,166975031	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	183116008	183116065	183116008	-	High_confidence	7	7	30	0.690745	4.164735	chr3	183115868	183116225	LTR|ERV1|MER51E	-	chr3	183015217	183116075	MCCC1|ENST00000492597.5	-	183015217,183017265,183020129,183022416,183025754,183033990,183037217,183039025,183041566,183045412,183052158,183057310,183070998,183071209,183072365,183086692,183094558,183115473	183015566,183017337,183020237,183022554,183025804,183034077,183037434,183039135,183041750,183045540,183052240,183057422,183071120,183071357,183072487,183086788,183094605,183116075	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	30285646	30285668	30285652	-	High_confidence	2	2	11	0.253273	2.721928	chr6	30285321	30286662	LINE|L1|L1MA1	-	chr6	30282348	30286054	AL662795.2|ENST00000624252.1	-	30282348	30286054	0.818182
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	122444225	122444988	122444225	-	RAMPAGE_only	78	84	2336	53.785987	7.005255	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	0.999572
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	98870596	98870601	98870600	-	High_confidence	2	4	7	0.161174	2.584963	chr7	98870597	98870897	SINE|Alu|AluSx1	-	chr7	98863094	98870771	TMEM130|ENST00000445790.1	-	98863094,98870398	98863400,98870771	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	237891311	237891332	237891331	+	RAMPAGE_only	5	5	11	0.253273	3.121928	chr2	237891135	237891449	SINE|Alu|AluY	-	chr2	237859975	237912010	RAMP1|ENST00000403885.1	+	237859975,237877223,237911527	237860003,237877362,237912010	0.818182
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	19034124	19034125	19034124	+	High_confidence	9	9	11	0.253273	3.095795	chr19	19034116	19034210	LINE|L2|L2b	-	chr19	19034102	19057881	ARMC6|ENST00000392336.7	+	19034102,19042710,19043991,19051621,19054151,19055264,19055790,19057415	19034238,19042877,19044074,19052195,19054321,19055396,19055928,19057881	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	48994931	48994932	48994931	+	RAMPAGE_only	5	6	6	0.138149	2.584963	chr19	48994647	48994932	SINE|Alu|AluSz	+	chr19	48993909	49009882	RUVBL2|ENST00000593570.5	+	48993909,48999318,49001348,49003278,49004276,49007017,49007301,49009775	48993923,48999373,49001590,49003334,49004418,49007147,49007368,49009882	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	119823257	119823258	119823257	-	RAMPAGE_only	6	6	9	0.207223	3.169925	chr12	119823188	119823312	LINE|L2|L2	+	chr12	119685790	119877288	CIT|ENST00000261833.11	-	119685790,119690150,119697658,119697975,119700744,119701623,119701849,119704362,119708178,119710250,119710539,119712177,119712590,119713202,119713467,119714196,119718244,119718698,119720477,119721308,119728501,119730494,119734163,119735159,119742410,119752049,119757370,119758590,119760938,119767086,119772769,119775785,119776357,119776671,119782517,119783907,119784959,119803205,119822819,119825164,119832770,119834085,119850173,119857522,119869059,119876072,119877248	119688255,119690454,119697838,119698054,119700825,119701752,119701958,119704455,119708318,119710386,119710620,119712347,119712695,119713294,119713648,119714334,119718409,119718861,119720585,119721449,119728606,119730630,119734357,119735357,119742464,119752247,119757545,119758700,119761055,119767182,119772910,119775839,119776408,119776842,119782637,119784051,119785065,119803389,119822973,119825368,119832864,119834228,119850275,119857698,119869201,119876181,119877288	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	4143196	4143218	4143199	+	High_confidence	239	245	690	15.887128	6.077528	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.975362
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	24988990	24989149	24989023	+	RAMPAGE_only	48	49	214	4.927312	6.008780	chr15	24989027	24989101	LINE|L2|L2a	+	chr15	24981993	25000276	MSTRG.7932.21	+	24981993,24998969,25000244	24998486,24999078,25000276	0.995327
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	113625643	113625700	113625643	-	RAMPAGE_only	3	5	25	0.575621	3.617797	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	0.960000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	143039459	143039483	143039459	+	High_confidence	3	3	12	0.276298	3.095795	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.583333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	10170534	10170566	10170534	+	High_confidence	4	4	16	0.368397	2.780639	chr12	10170491	10170780	SINE|Alu|AluSg	-	chr12	10170728	10175522	TMEM52B|ENST00000545924.1	+	10170728,10175281	10170851,10175522	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	34364734	34364737	34364734	+	High_confidence	3	3	8	0.184199	2.521641	chr19	34364780	34364874	LINE|L2|L2a	+	chr19	34364739	34402413	GPI|NM_001184722.1	+	34364739,34365259,34366344,34366782,34368582,34377734,34378933,34379517,34381465,34393247,34393727,34393913,34396300,34396580,34399206,34399555,34399718,34399900	34365019,34365388,34366435,34366851,34368702,34377881,34379005,34379562,34381519,34393308,34393771,34394066,34396430,34396657,34399335,34399631,34399785,34402413	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	122882295	122882407	122882406	+	High_confidence	10	10	87	2.003160	4.941755	chr11	122881733	122882629	LINE|L1|L1ME3D	-	chr11	122882527	122905892	C11orf63|NM_199124.2	+	122882527,122885760,122903924,122905171	122882972,122886193,122904444,122905892	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	175891539	175891560	175891546	-	RAMPAGE_only	2	2	7	0.161174	2.584963	chr4	175890999	175891614	LTR|ERV1|MER90a	+	chr4	175673679	175907168	GPM6A|ENST00000513365.1	-	175673679,175701574,175812190,175906652,175907042	175673836,175701767,175812249,175906851,175907168	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	48492787	48492791	48492790	-	High_confidence	4	4	8	0.184199	2.807355	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	170141533	170141589	170141555	-	RAMPAGE_only	16	20	42	0.967043	3.840575	chr3	170141493	170141603	LINE|RTE-X|L4_A_Mam	+	chr3	170129384	170136670	PHC3|ENST00000497171.1	-	170129384,170136418	170129552,170136670	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	155641650	155641668	155641667	+	RAMPAGE_only	3	3	8	0.184199	2.500000	chrX	155641390	155642085	LTR|ERV1|LTR30	-	chrX	155612564	155782459	SPRY3|NM_001304990.1	+	155612564,155767961,155773765	155612647,155768136,155782459	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	11033802	11033829	11033802	+	High_confidence	2	2	11	0.253273	2.721928	chr19	11033706	11034051	SINE|tRNA|LFSINE_Vert	-	chr19	11033486	11061915	SMARCA4|ENST00000538456.4	+	11033486,11034122,11034913,11041297,11058254,11059752,11060044,11061783	11033517,11034200,11035132,11041560,11058363,11059885,11060187,11061915	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	155883271	155883727	155883292	+	RAMPAGE_only	23	28	394	9.071780	5.554902	chr1	155883251	155883538	SINE|Alu|AluJb	+	chr1	155859508	155885199	SYT11|ENST00000368324.4	+	155859508,155867964,155880499,155881197	155859795,155868791,155880623,155885199	0.997462
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	93504729	93504747	93504729	-	RAMPAGE_only	5	5	16	0.368397	3.773557	chr5	93504513	93504869	LTR|ERVL-MaLR|THE1A	-	chr5	93411017	93438737	NR2F1-AS1|ENST00000606188.1	-	93411017,93438702	93411509,93438737	0.937500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	103395848	103395905	103395881	-	High_confidence	2	2	13	0.299323	3.022055	chr10	103395615	103395992	LINE|RTE-X|L4_C_Mam	+	chr10	103389049	103396074	ATP5MD|ENST00000369811.5	-	103389049,103392190,103392370,103395745	103389166,103392283,103392466,103396074	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	44914307	44914432	44914321	+	High_confidence	165	165	357	8.219862	5.459492	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.887955
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	134432378	134432445	134432378	-	High_confidence	23	23	103	2.371557	5.066522	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.708738
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	39341621	39341717	39341621	-	High_confidence	7	7	65	1.496613	4.931193	chr19	39340883	39341633	LINE|L2|L2	+	chr19	39328361	39342372	GMFG|ENST00000600322.5	-	39328361,39328999,39329543,39333076,39335260,39335434,39342291	39328548,39329073,39329626,39333126,39335310,39335531,39342372	0.938462
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	75979616	75979637	75979636	+	High_confidence	4	4	15	0.345372	3.378783	chr11	75974665	75980018	LINE|L1|L1PA6	-	chr11	75979525	76142651	UVRAG|ENST00000531818.5	+	75979525,75983386,76004004,76007533,76008806,76016814,76065709,76115923,76140710	75980038,75983513,76004089,76007621,76008867,76016980,76065788,76116015,76142651	0.933333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	23404025	23404065	23404025	-	RAMPAGE_only	9	10	31	0.713770	4.506891	chr1	23403928	23404035	LINE|RTE-BovB|MamRTE1	+	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.774194
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	107580458	107580476	107580458	+	High_confidence	9	9	19	0.437472	4.037401	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.684211
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	225774965	225774970	225774967	+	RAMPAGE_only	8	14	27	0.621670	4.483856	chr1	225774781	225775174	LTR|ERVL-MaLR|MSTA	+	chr1	225777812	225790466	SRP9|NM_001130440.1	+	225777812,225783299,225786861,225789239	225778012,225783368,225786985,225790466	0.851852
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	159681872	159681873	159681872	-	RAMPAGE_only	20	20	27	0.621670	4.469670	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	0.962963
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	128098295	128098327	128098326	+	RAMPAGE_only	3	3	8	0.184199	3.000000	chr4	128098347	128098409	LINE|L1|L1MC2	+	chr4	128077840	128122352	LARP1B|ENST00000507377.1	+	128077840,128082164,128091000,128091346,128098185,128107138,128114569,128121825	128077962,128082305,128091144,128091512,128098330,128107313,128114742,128122352	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	52661489	52661507	52661489	+	RAMPAGE_only	4	4	13	0.299323	2.873141	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	93432330	93432347	93432330	-	RAMPAGE_only	12	12	23	0.529571	3.880180	chr10	93432105	93432412	SINE|Alu|AluJr	+	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.521739
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	109498754	109498800	109498783	-	High_confidence	6	6	31	0.713770	4.706891	chr9	109498741	109499030	LINE|L2|L2a	+	chr9	109375693	109498313	PTPN3|ENST00000262539.7	-	109375693,109381651,109382301,109383306,109389232,109391137,109391470,109404447,109406461,109408320,109409998,109410228,109420423,109422717,109426949,109428620,109433072,109436882,109438113,109445239,109448810,109454495,109457172,109457291,109463296,109498218	109379633,109381787,109382447,109383551,109389379,109391199,109391561,109404608,109406618,109408377,109410076,109410415,109420600,109422852,109427122,109428684,109433161,109436970,109438234,109445292,109448855,109454574,109457215,109457399,109463451,109498313	0.935484
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	103684986	103685036	103685034	+	RAMPAGE_only	15	26	85	1.957110	5.512815	chr14	103684918	103685042	SINE|MIR|MIRc	-	chr14	103675551	103686200	KLC1|ENST00000553325.5	+	103675551,103675688,103677414,103679383,103684985,103685637	103675601,103675756,103677523,103679518,103685036,103686200	0.505882
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	3795740	3795789	3795759	+	High_confidence	7	9	79	1.818961	5.277280	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	139344535	139344579	139344547	+	High_confidence	182	182	554	12.755752	5.865664	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.949458
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	100811125	100811151	100811125	-	RAMPAGE_only	5	5	19	0.437472	3.110578	chr5	100810895	100811184	SINE|Alu|AluY	+	chr5	100806934	100903266	ST8SIA4|ENST00000231461.9	-	100806934,100856102,100886342,100895653,100902842	100812129,100856396,100886600,100895785,100903266	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	60210044	60210054	60210044	+	RAMPAGE_only	6	6	10	0.230248	2.947703	chr18	60210000	60210089	LINE|L1|L1M1	+	chr18	60329232	60538595	AC091576.1|ENST00000650201.1	+	60329232,60479570,60535632,60538299	60329345,60479672,60535755,60538595	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	79373870	79373887	79373886	+	RAMPAGE_only	4	4	10	0.230248	2.503258	chr2	79373725	79373942	SINE|MIR|MIRb	-	chr2	79512933	80648868	CTNNA2|NM_001282597.2	+	79512933,79651551,79744386,79858012,79869815,79874075,79909593,80393210,80419448,80544981,80545906,80555692,80574162,80581705,80589303,80604073,80608183,80619084,80647584	79513207,79651658,79744582,79858179,79869935,79874342,79909797,80393291,80419601,80545074,80546063,80555893,80574314,80581819,80589485,80604179,80608318,80619228,80648868	0.700000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	58449448	58449493	58449482	+	RAMPAGE_only	3	4	23	0.529571	4.011365	chr8	58449418	58450701	LTR|ERVL-MaLR|MLT1D-int	-	chr8	58411263	58451501	UBXN2B|NM_001077619.1	+	58411263,58416849,58430518,58433159,58434394,58439632,58445906,58447388	58411469,58416953,58430669,58433243,58434504,58439770,58446068,58451501	0.913043
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	158172987	158173025	158173024	-	High_confidence	90	93	134	3.085326	5.748587	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.947761
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	153674316	153674361	153674360	-	High_confidence	7	7	32	0.736794	4.437500	chrX	153674234	153674570	LINE|L2|L2a	+	chrX	153669732	153674361	PNCK|NM_001039582.3	-	153669732,153670449,153670743,153670917,153671077,153671284,153671548,153671879,153672125,153672565,153673008,153673928	153670130,153670594,153670831,153670996,153671190,153671360,153671672,153672018,153672200,153672697,153673078,153674361	0.906250
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	94435396	94435446	94435396	-	RAMPAGE_only	11	11	37	0.851918	4.947703	chr12	94435233	94435447	LTR|ERV1|MER39	+	chr12	94308285	94412595	CEP83|ENST00000397807.6	-	94308285,94309917,94312913,94312930,94331699,94333481,94335588,94367793,94368056,94369921,94375885,94378790,94400849,94403169,94411696,94412317	94308917,94310107,94312929,94313017,94331829,94333639,94335664,94367943,94368201,94370036,94376017,94379042,94400981,94403262,94411847,94412595	0.702703
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	126852190	126852216	126852190	+	RAMPAGE_only	2	2	13	0.299323	3.392747	chr3	126852226	126852428	SINE|MIR|MIR	+	chr3	126854863	126949879	CHCHD6|ENST00000515867.1	+	126854863,126914679,126949257	126854948,126914750,126949879	0.692308
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	148433301	148433321	148433316	+	RAMPAGE_only	12	12	38	0.874943	4.754378	chr1	148432841	148433382	LTR|ERV1|MER66C	-	chr1	148444944	148448219	MSTRG.1569.1	+	148444944	148448219	0.815789
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	153871899	153871922	153871911	+	High_confidence	5	5	19	0.437472	3.572431	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.947368
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	52548793	52548960	52548956	-	RAMPAGE_only	74	103	263	6.055528	4.696717	chr15	52548772	52548988	DNA|TcMar-Tigger|MamRep434	-	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	0.996198
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	57516505	57516528	57516505	+	RAMPAGE_only	2	2	7	0.161174	2.521641	chr15	57516424	57516656	DNA|hAT-Charlie|MER58A	-	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	26399412	26399495	26399442	-	High_confidence	15	15	93	2.141309	5.794003	chr7	26399411	26399720	DNA|hAT-Charlie|MER33	+	chr7	26372018	26399418	LOC105375304|NR_136272.1	-	26372018,26399340	26372568,26399418	0.860215
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	112039600	112039605	112039604	+	High_confidence	4	4	8	0.184199	2.500000	chr3	112039253	112040092	LTR|ERVL|MER21C	+	chr3	112039617	112081269	TMPRSS7|NR_026734.1	+	112039617,112041919,112044254,112045752,112047407,112047738,112049843,112050670,112057024,112061786,112063524,112066391,112074295,112075320,112076875,112078741,112080913	112039749,112042050,112044322,112045943,112047520,112047967,112049974,112050783,112057131,112061923,112063632,112066502,112074412,112075492,112077144,112078878,112081269	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	149218585	149218641	149218640	+	High_confidence	39	71	223	5.134536	6.673450	chr6	149218600	149218675	SINE|MIR|MIR3	-	chr6	149218697	149244072	AL031056.1|ENST00000445901.1	+	149218697,149243728	149218776,149244072	0.627803
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	143018267	143018310	143018308	-	High_confidence	4	6	29	0.667720	3.791925	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	142982048	143018381	LY6E-DT|ENST00000522060.1	-	142982048,143009048,143018159	142982501,143009207,143018381	0.689655
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	43025273	43025329	43025303	+	High_confidence	4	4	22	0.506546	3.788755	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.954545
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	78568325	78568364	78568363	-	High_confidence	20	24	48	1.105192	4.996115	chr7	78567616	78568734	LINE|L2|L2a	+	chr7	78518063	78568364	MAGI2|ENST00000635863.1	-	78518063,78521429,78567948,78568094	78519126,78521645,78568004,78568364	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	52570278	52570324	52570323	+	RAMPAGE_only	23	25	75	1.726862	5.283238	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.546667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	9993966	9993969	9993968	-	High_confidence	3	6	8	0.184199	2.521641	chr11	9993915	9994007	DNA|hAT-Ac|OldhAT1	+	chr11	9853706	9993104	SBF2|ENST00000420722.2	-	9853706,9856457,9858225,9895942,9961956,9963772,9968340,9989496,9992989	9853712,9856720,9858396,9896011,9962106,9963882,9968545,9989595,9993104	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	57294847	57294848	57294847	+	RAMPAGE_only	5	5	8	0.184199	2.750000	chr19	57294290	57294864	LINE|L1|L1MA5	-	chr19	57280050	57308562	MSTRG.13517.1	+	57280050,57284550,57290698,57291339	57280124,57284677,57291255,57308562	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	22024605	22024639	22024621	+	High_confidence	13	14	47	1.082167	4.857676	chr8	22024494	22024638	DNA|hAT-Charlie|MER5A	+	chr8	22024433	22036897	NPM2|ENST00000518119.5	+	22024433,22024723,22025215,22025435,22025646,22033129,22034108,22034509,22036492,22036637	22024623,22024830,22025306,22025521,22025772,22033223,22034275,22034544,22036526,22036897	0.914894
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	98045561	98045584	98045583	+	RAMPAGE_only	5	5	11	0.253273	3.121928	chr9	98045312	98045711	LTR|ERV1|MER57B1	+	chr9	98056676	98083083	NANS|NM_018946.3	+	98056676,98060781,98076917,98078192,98080815,98082845	98056940,98060997,98077017,98078347,98081082,98083083	0.818182
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	68248530	68248553	68248552	+	High_confidence	4	4	12	0.276298	3.084963	chr17	68248543	68248580	LINE|L2|L2c	-	chr17	68248534	68256926	AMZ2|ENST00000585050.5	+	68248534,68249010,68250359,68250793,68251049,68256813	68248705,68249096,68250470,68250967,68251178,68256926	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	24968346	24968484	24968471	-	High_confidence	63	65	370	8.519185	7.499234	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24933005	24968453	TPTE2P1|ENST00000649209.1	-	24933005,24937576,24940506,24941986,24942931,24951396,24951594,24961748,24967391,24968205	24934663,24937770,24940785,24942108,24943021,24951488,24951770,24961849,24967453,24968453	0.508108
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	25702755	25702756	25702755	+	RAMPAGE_only	4	4	7	0.161174	2.584963	chr22	25702730	25702939	SINE|MIR|MIRb	-	chr22	25564916	25729294	MSTRG.16494.3	+	25564916,25604376,25661575,25663629,25667738,25672295,25674436,25678815,25685169,25687536,25690188,25695106,25703509,25704108,25709897,25711067,25714407,25718244,25721283,25722288	25565153,25604453,25661677,25663704,25667800,25672347,25674528,25678915,25685248,25687667,25690283,25695214,25703576,25704209,25709964,25711163,25714570,25718381,25721397,25729294	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	127765210	127765218	127765210	-	RAMPAGE_only	2	2	8	0.184199	2.750000	chr2	127765110	127765160	LINE|CR1|L3	-	chr2	127701021	127811147	WDR33|ENST00000322313.8	-	127701021,127708676,127709489,127709692,127713582,127717154,127719264,127721835,127722590,127722957,127723252,127724332,127724886,127725060,127726650,127763061,127764827,127765173,127768188,127768932,127770777,127811011	127706552,127708892,127709582,127709856,127714021,127717263,127720353,127721988,127722730,127723044,127723347,127724443,127724965,127725215,127726777,127763159,127764979,127765269,127768293,127769001,127771004,127811147	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	118393264	118393271	118393270	+	High_confidence	4	4	8	0.184199	2.500000	chrX	118393300	118393615	SINE|Alu|AluJb	+	chrX	118392747	118449336	WDR44|ENST00000371848.3	+	118392747,118394054,118395248,118396969,118398386,118404337,118406874,118409488,118410894,118432780,118436701,118441367,118442243,118442564,118443559,118444359,118447059,118448892	118393271,118394185,118395344,118397106,118398470,118404444,118407026,118409627,118410959,118432894,118436824,118441559,118442345,118442680,118443687,118444494,118447114,118449336	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	57568212	57568218	57568212	-	High_confidence	21	22	37	0.851918	4.553652	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	49168492	49168514	49168492	+	High_confidence	2	2	9	0.207223	3.169925	chr8	49167941	49168559	LTR|ERVL|MER70B	-	chr8	49168538	49228925	AC022568.1|ENST00000518222.1	+	49168538,49224937,49228139,49228557	49168809,49225050,49228220,49228925	0.555556
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	184908405	184908407	184908405	+	RAMPAGE_only	2	4	7	0.161174	2.521641	chr3	184908278	184909120	LTR|ERV1|LTR27B	-	chr3	184885968	185052311	VPS8|ENST00000492449.5	+	184885968,184894702,184898564,184900920,184913518,184914980,184915354,184920126,184924861,184926593,184928450,184929579,184930469,184936245,184940196,184957373,184964467,184966670,184971648,184982565,184983011,184993982,184996331,184999695,185024335,185048478,185051875	184886156,184894925,184898654,184900972,184913561,184915053,184915474,184920198,184924981,184926650,184928533,184929664,184930568,184936335,184940243,184957521,184964557,184966713,184971752,184982647,184983094,184994063,184996501,184999861,185024389,185048559,185052311	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	46530311	46530393	46530311	-	RAMPAGE_only	13	14	81	1.865011	5.726808	chr19	46530185	46530438	LINE|L2|L2b	+	chr19	46525475	46600931	PPP5D1|ENST00000593359.2	-	46525475,46526924,46600882	46525784,46527072,46600931	0.530864
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	177507769	177507827	177507809	+	RAMPAGE_only	17	25	90	2.072234	5.067968	chr2	177507688	177507814	LINE|L2|L2b	-	chr2	177392767	177538418	AGPS|ENST00000409888.1	+	177392767,177420268,177521328,177523747,177538073	177393049,177420358,177521368,177523805,177538418	0.677778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	39064912	39064922	39064912	-	RAMPAGE_only	8	8	17	0.391422	3.702820	chr14	39064766	39064897	SINE|Alu|FLAM_C	-	chr14	39031918	39088723	SEC23A|ENST00000537403.5	-	39031918,39039030,39040731,39042785,39045162,39048651,39055142,39061764,39063323,39064912,39067172,39074414,39075934,39085761,39086928,39087523	39033328,39039096,39040887,39042872,39045324,39048729,39055296,39061871,39063413,39064993,39067296,39074530,39076093,39085906,39087008,39088723	0.941176
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	163426340	163426356	163426340	+	RAMPAGE_only	5	5	17	0.391422	3.702820	chr6	163425976	163427403	LINE|L1|L1MC5a	-	chr6	163423133	163563454	QKI|ENST00000537041.5	+	163423133,163455278,163478779,163534981,163561981,163563443	163423213,163455421,163478896,163535125,163562069,163563454	0.588235
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	23939529	23939583	23939582	+	High_confidence	5	5	25	0.575621	4.136842	chr2	23939241	23939827	LTR|ERV1|MER92B	-	chr2	23940418	24004909	UBXN2A|ENST00000309033.4	+	23940418,23958300,23971275,23976968,23982895,23984672,23999671	23940648,23958355,23971414,23977075,23983033,23984831,24004909	0.880000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	36807858	36807870	36807869	-	High_confidence	22	24	46	1.059142	4.861970	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.652174
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	34874759	34874780	34874779	+	RAMPAGE_only	6	6	10	0.230248	3.121928	chr6	34874714	34874995	LINE|CR1|CR1_Mam	+	chr6	34792079	34877514	UHRF1BP1|ENST00000192788.5	+	34792079,34821652,34821916,34823256,34834216,34834720,34835293,34836155,34855616,34856238,34856789,34857328,34857723,34858123,34864001,34867224,34867465,34870853,34871583,34871818,34872312	34792294,34821815,34821955,34823348,34834406,34834861,34835464,34836348,34855703,34856409,34856929,34857470,34857917,34859571,34864198,34867379,34867616,34871116,34871692,34871925,34877514	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	33770745	33770777	33770765	-	RAMPAGE_only	2	2	9	0.207223	3.000000	chr11	33770411	33770718	LINE|L2|L2c	-	chr11	33740938	33774347	FBXO3|ENST00000526785.5	-	33740938,33747129,33748776,33750538,33751522,33754454,33755770,33758486,33768850,33770740	33742084,33747320,33748892,33750661,33751607,33754500,33755975,33758601,33769014,33774347	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	32571172	32571173	32571172	+	RAMPAGE_only	8	9	9	0.207223	2.500000	chr5	32571161	32571263	LTR|ERVL-MaLR|MLT1J1	-	chr5	32585498	32604079	SUB1|ENST00000265073.8	+	32585498,32588511,32591562,32598960,32601004	32585625,32588584,32591685,32599069,32604079	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	106682458	106682509	106682469	-	RAMPAGE_only	3	4	24	0.552596	4.061482	chr11	106682331	106682490	DNA|hAT-Charlie|MER5B	+	chr11	106674018	106988205	MSTRG.4649.2	-	106674018,106708511,106776438,106809992,106936649,106978618,106986069	106687756,106708666,106776582,106810478,106940178,106978740,106988205	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	113758055	113758085	113758081	-	RAMPAGE_only	7	8	30	0.690745	4.086790	chr1	113758040	113758255	SINE|Alu|AluSq2	+	chr1	113697201	113759155	PHTF1|ENST00000393357.6	-	113697201,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113759155	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	127451087	127451108	127451087	-	High_confidence	4	4	11	0.253273	2.721928	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	73964611	73964614	73964611	-	RAMPAGE_only	4	5	10	0.230248	2.947703	chr8	73964514	73964649	SINE|Alu|FLAM_C	+	chr8	73946263	73970637	ELOC|ENST00000519487.5	-	73946263,73955910,73959764,73970578	73946820,73956054,73959818,73970637	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	52569721	52569722	52569721	-	High_confidence	17	17	17	0.391422	3.969816	chr15	52569688	52569809	LINE|L2|L2	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	0.705882
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	196941594	196941616	196941615	-	High_confidence	4	4	9	0.207223	2.725481	chr3	196941558	196941660	LINE|L2|L2b	+	chr3	196937339	196941769	NCBP2|ENST00000479647.1	-	196937339,196939250,196941708	196937648,196939432,196941769	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	58054206	58054219	58054218	-	RAMPAGE_only	8	11	20	0.460496	4.142664	chr14	58053997	58054183	SINE|MIR|MIR1_Amn	-	chr14	58000760	58152213	ARMH4|ENST00000267485.7	-	58000760,58005047,58012118,58096723,58131511,58133089,58137989,58152074	58004804,58005182,58012150,58096981,58131721,58133341,58139414,58152213	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	4355592	4355593	4355592	-	High_confidence	403	408	408	9.394128	5.220352	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.987745
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	42567723	42567814	42567787	+	RAMPAGE_only	3	3	21	0.483521	3.141619	chr15	42567556	42567866	SINE|Alu|AluSx1	+	chr15	42548837	42568930	HAUS2|ENST00000391623.8	+	42548837,42559338,42560781,42561269,42563748,42566606	42548965,42559408,42560870,42561402,42563857,42568930	0.904762
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	92536601	92536652	92536601	-	High_confidence	18	21	44	1.013092	5.004886	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.863636
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	74148407	74148449	74148407	+	High_confidence	40	51	200	4.604965	6.257806	chr2	74148357	74148636	LINE|L2|L2	-	chr2	74148044	74149988	BOLA3-AS1|ENST00000533563.1	+	74148044,74148349,74148697	74148223,74148478,74149988	0.965000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	36024849	36024875	36024849	-	High_confidence	3	3	17	0.391422	3.625000	chr6	36024812	36024869	LINE|L2|L2a	-	chr6	35943513	36024855	SLC26A8|ENST00000490799.5	-	35943513,35951162,35951444,35955151,35959459,35959713,35960842,35960992,35962525,35968876,35975374,35977203,35982120,35991658,35992509,35997737,35999991,36012232,36019519,36024503	35944340,35951347,35951499,35955520,35959591,35959806,35960912,35961099,35962621,35968954,35975488,35977351,35982203,35991808,35992674,35997919,36000108,36012372,36019709,36024855	0.941176
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	104254062	104254085	104254062	+	High_confidence	40	40	122	2.809028	5.347295	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254163	104266190	GSTO1|ENST00000493946.1	+	104254163,104255162,104259575,104262978,104266083	104254499,104255271,104259798,104263077,104266190	0.942623
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	53585017	53585024	53585017	-	RAMPAGE_only	11	11	19	0.437472	3.281036	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.947368
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	43826848	43826865	43826848	+	High_confidence	3	4	9	0.207223	2.500000	chr15	43826579	43826872	SINE|Alu|AluSq2	-	chr15	43826913	43868419	WDR76|NM_001167941.1	+	43826913,43828074,43835060,43836160,43839604,43842414,43842627,43843900,43851086,43856945,43858670,43861332,43866127	43827092,43828366,43835150,43836216,43839728,43842516,43842671,43844054,43851245,43857163,43858823,43861386,43868419	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	75047390	75047448	75047447	+	RAMPAGE_only	6	7	35	0.805869	4.514718	chr4	75047494	75047704	DNA|hAT-Charlie|MER20	+	chr4	74933115	75050113	PARM1|ENST00000307428.7	+	74933115,75012424,75033882,75046162	74933370,75013150,75033961,75050113	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	32527421	32527477	32527421	-	RAMPAGE_only	5	5	22	0.506546	4.277613	chr13	32527156	32527383	SINE|MIR|MIRc	-	chr13	32516893	32525579	N4BP2L2|ENST00000503814.1	-	32516893,32521372	32518003,32525579	0.727273
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	58312248	58312276	58312264	+	RAMPAGE_only	5	5	18	0.414447	3.734522	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.944444
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	20372696	20372712	20372711	-	High_confidence	5	5	13	0.299323	3.392747	chr22	20372309	20373771	LINE|L1|L1M3de	+	chr22	20350577	20372696	USP41|ENST00000486536.6	-	20350577,20363624,20364185,20366566,20367547,20369428,20370119,20372535	20350931,20363674,20364317,20366734,20367643,20369575,20370199,20372696	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	14945660	14945840	14945679	-	RAMPAGE_only	19	19	151	3.476748	5.828909	chr3	14945072	14946290	DNA|TcMar-Mariner|HSMAR1	-	chr3	14942778	14947505	FGD5-AS1|NR_046252.1	-	14942778,14947086	14946154,14947505	0.986755
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	10380376	10380424	10380423	+	RAMPAGE_only	6	6	24	0.552596	3.827910	chr1	10380425	10380719	SINE|Alu|AluSx	+	chr1	10232328	10381596	KIF1B|ENST00000620295.2	+	10232328,10256246,10258492,10261904,10267379,10268151,10271501,10272240,10273013,10275427,10276320,10277985,10282321,10291081,10292046,10295085,10295659,10296581,10296896,10297173,10320042,10321708,10323883,10324757,10326110,10334519,10336656,10337073,10337370,10339768,10342049,10343231,10345844,10347760,10348648,10352630,10360928,10361691,10363282,10365099,10365408,10368466,10371140,10374315,10374853,10375254,10378338	10232434,10256323,10258672,10261970,10267558,10268263,10271579,10272306,10273031,10275503,10276399,10278128,10282533,10291161,10292122,10295165,10295766,10296665,10297077,10297246,10320136,10321857,10324062,10324895,10326359,10334638,10336742,10337203,10337533,10339859,10342168,10343287,10345953,10347827,10348733,10352736,10361043,10361825,10363344,10365245,10365648,10368538,10371262,10374465,10375046,10375373,10381596	0.958333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65382641	65382660	65382659	-	High_confidence	5	6	13	0.299323	3.251629	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	26366330	26366396	26366395	+	RAMPAGE_only	6	6	39	0.897968	4.077212	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	0.871795
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	5680196	5680261	5680240	-	High_confidence	37	37	241	5.548982	5.863945	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.987552
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	46064131	46064151	46064150	+	High_confidence	5	5	12	0.276298	3.095795	chr14	46063782	46064404	LTR|ERV1|LTR9	-	chr14	46064158	46501903	LINC00871|NR_102701.1	+	46064158,46210823,46211746,46438180,46449907,46501306	46064216,46210939,46211804,46438250,46449954,46501903	0.583333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	57641671	57641699	57641676	+	High_confidence	3	3	13	0.299323	3.546594	chr16	57641565	57641864	SINE|Alu|AluSz6	-	chr16	57640964	57651468	ADGRG1|ENST00000563414.5	+	57640964,57641590,57650252,57651199	57641064,57641708,57650351,57651468	0.692308
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	49227527	49227550	49227527	+	High_confidence	8	8	18	0.414447	3.572431	chr12	49227287	49227588	SINE|Alu|AluSx	+	chr12	49227544	49273166	MSTRG.5491.8	+	49227544,49228090,49256396,49269464,49269827,49272252	49227840,49228166,49256511,49269687,49269976,49273166	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	12069749	12069792	12069758	+	High_confidence	115	131	361	8.311961	6.417918	chr17	12069730	12069890	LINE|CR1|L3	+	chr17	12069755	12125350	MAP2K4|ENST00000579089.5	+	12069755,12095574,12107789,12110374,12113232,12125293	12069849,12095694,12107909,12110426,12113360,12125350	0.673130
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	33021455	33021456	33021455	-	RAMPAGE_only	7	10	10	0.230248	2.921928	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	37857462	37857508	37857507	-	High_confidence	4	4	13	0.299323	3.418296	chr10	37857478	37857541	SINE|MIR|MIR	-	chr10	37802822	37857551	ZNF248|ENST00000485560.5	-	37802822,37803832,37833024,37837616,37837984,37856295,37857184	37803692,37803943,37833116,37837712,37838111,37856337,37857551	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	51814471	51814617	51814471	+	RAMPAGE_only	5	5	102	2.348532	5.216161	chr15	51814446	51814570	LINE|L2|L2c	+	chr15	51751666	51816368	MSTRG.8270.4	+	51751666,51766372,51767070,51773711,51776931,51781043,51782720,51798196,51806376,51808419	51751712,51766567,51768418,51773834,51777018,51781174,51782828,51798340,51806521,51816368	0.970588
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	55172906	55172922	55172916	-	High_confidence	4	4	12	0.276298	2.663533	chr19	55172843	55172926	SINE|MIR|MIRc	-	chr19	55171686	55173093	SYT5|ENST00000592935.1	-	55171686,55172577	55171781,55173093	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	26647223	26647236	26647235	+	High_confidence	5	5	12	0.276298	3.418296	chr22	26647225	26647366	LINE|L2|L2b	-	chr22	26647227	26665809	MIAT|ENST00000430483.5	+	26647227,26660698,26663315,26665530	26647340,26660816,26663398,26665809	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	141737465	141737480	141737479	+	High_confidence	3	3	9	0.207223	3.169925	chr7	141736645	141737590	DNA|TcMar-Tigger|Tigger3b	+	chr7	141738320	141750461	SSBP1|ENST00000265304.10	+	141738320,141739123,141742168,141743560,141743901,141745495,141750310	141738410,141739190,141742229,141743701,141743989,141745584,141750461	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	57197088	57197125	57197088	+	RAMPAGE_only	3	3	18	0.414447	3.461320	chr3	57196989	57197284	SINE|Alu|AluYc	-	chr3	57227725	57278105	APPL1|ENST00000650354.1	+	57227725,57235565,57237491,57238044,57240464,57242100,57242855,57246075,57247394,57248192,57249359,57252268,57253681,57256956,57257245,57259027,57259844,57260116,57260627,57267741,57268397,57269540,57276303,57277792	57227937,57235664,57237551,57238116,57240552,57242142,57242914,57246222,57247477,57248351,57249548,57252311,57253738,57257051,57257428,57259080,57260019,57260153,57260774,57267792,57268487,57269751,57276459,57278105	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	38414566	38414568	38414566	-	RAMPAGE_only	6	12	13	0.299323	3.251629	chr9	38414336	38414535	SINE|MIR|MIR3	-	chr9	38406527	38424447	IGFBPL1|NM_001007563.2	-	38406527,38411390,38413236,38414093,38423964	38409217,38411549,38413353,38414203,38424447	0.846154
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	146788326	146788356	146788326	+	RAMPAGE_only	3	3	12	0.276298	3.277613	chr6	146788237	146788400	DNA|TcMar-Tigger|Tigger9a	+	chr6	146801858	146807838	ADGB|ENST00000367489.2	+	146801858,146807401	146802011,146807838	0.583333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	116499297	116499304	116499297	+	High_confidence	3	3	9	0.207223	3.000000	chr7	116499174	116499371	SINE|MIR|MIRb	-	chr7	116499389	116508541	CAV2|ENST00000222693.4	+	116499389,116500259,116505970	116499931,116500447,116508541	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	27445106	27445108	27445107	-	RAMPAGE_only	9	18	21	0.483521	4.142664	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.904762
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	33864090	33864105	33864090	+	RAMPAGE_only	6	6	12	0.276298	2.845351	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	65053813	65053855	65053822	-	RAMPAGE_only	7	8	21	0.483521	3.621928	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64947546	65072260	MSTRG.9718.3	-	64947546,64950766,64971578,64971930,64972903,64982047,64988156,64991767,64992914,64998561,65004641,65053803,65071988	64948787,64951018,64971696,64972064,64973040,64982301,64988344,64991935,64993034,64998856,65005041,65053928,65072260	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	13554514	13554527	13554514	-	RAMPAGE_only	3	3	7	0.161174	2.584963	chr12	13554112	13554482	LINE|L2|L2c	-	chr12	13537336	13980363	GRIN2B|ENST00000609686.3	-	13537336,13567024,13569829,13571803,13608602,13611724,13615113,13615492,13616454,13675744,13753316,13865797,13979927	13564639,13567263,13570017,13571964,13608832,13611850,13615267,13615664,13616657,13675859,13753915,13866226,13980363	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	154975518	154975546	154975524	+	High_confidence	12	12	32	0.736794	4.051109	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	9792215	9792226	9792225	-	High_confidence	3	3	7	0.161174	2.584963	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	227534913	227534950	227534913	+	RAMPAGE_only	4	4	16	0.368397	3.373557	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.937500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	93701940	93701959	93701940	-	High_confidence	4	4	8	0.184199	3.000000	chr10	93701798	93702029	SINE|MIR|MIR	+	chr10	93667882	93702572	FRA10AC1|ENST00000359204.4	-	93667882,93670769,93676652,93681479,93684055,93685245,93687403,93692008,93692645,93694860,93698135,93698300,93700029,93702374	93669868,93670848,93676691,93681598,93684098,93685359,93687449,93692093,93692729,93694937,93698181,93698396,93700106,93702572	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	46239680	46239704	46239680	-	High_confidence	3	3	17	0.391422	3.500000	chr12	46239310	46239631	SINE|Alu|AluSz	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.941176
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	58857466	58857469	58857466	+	RAMPAGE_only	8	8	24	0.552596	4.251629	chr15	58857267	58857555	SINE|Alu|AluSx1	+	chr15	58771361	58861900	FAM63B|NM_001040453.2	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58861900	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	130017188	130017219	130017188	-	High_confidence	6	6	24	0.552596	4.523562	chr8	130017097	130017284	LINE|L2|L2a	-	chr8	129862249	130017129	FAM49B|ENST00000523993.5	-	129862249,129871374,129879388,129903311,129904498,129970942,130017017	129862334,129871496,129879471,129903350,129904585,129970995,130017129	0.541667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	61955382	61955393	61955382	-	RAMPAGE_only	3	3	9	0.207223	2.500000	chr17	61954857	61955361	LTR|ERVL-MaLR|MLT1D	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	57623444	57623445	57623444	+	RAMPAGE_only	9	11	11	0.253273	3.277613	chr19	57623386	57624308	LTR|ERVL-MaLR|MLT1F-int	+	chr19	57614250	57624723	ZNF134|ENST00000396161.9	+	57614250,57619411,57620159	57614503,57619508,57624723	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	17568331	17568654	17568331	+	RAMPAGE_only	102	106	1108	25.511504	4.456170	chr21	17568125	17568427	SINE|Alu|AluY	-	chr21	17512905	17570111	CXADR|NM_001338.4	+	17512905,17547026,17551748,17558975,17560701,17561337,17565427	17513172,17547193,17551953,17559131,17560824,17561476,17570111	0.999097
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	30535290	30535291	30535290	+	High_confidence	4	4	6	0.138149	2.584963	chr16	30535226	30535680	LTR|ERV1|MER4A1	-	chr16	30534751	30537144	AC002310.1|ENST00000457283.3	+	30534751,30536428	30535480,30537144	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	65722828	65722853	65722852	-	High_confidence	4	4	9	0.207223	2.641604	chr5	65722781	65722883	DNA|hAT-Ac|OldhAT1	-	chr5	65680687	65723035	SGTB|ENST00000506816.1	-	65680687,65685367,65704278,65708488,65712960,65720707,65722756	65680794,65685472,65704378,65708558,65713064,65720829,65723035	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	57274832	57274877	57274832	+	RAMPAGE_only	2	3	14	0.322348	3.546594	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	108768090	108768105	108768104	+	RAMPAGE_only	4	5	13	0.299323	3.251629	chr5	108768042	108768250	LINE|CR1|L3b	-	chr5	108748966	108843001	FER|ENST00000502752.1	+	108748966,108768092,108782662,108798123,108832769,108835707,108841830,108842261	108748993,108768238,108782755,108798389,108832943,108835807,108841868,108843001	0.846154
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	33141750	33141751	33141750	-	RAMPAGE_only	6	6	9	0.207223	2.750000	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33084583	33161465	CSTF3|ENST00000323959.8	-	33084583,33085712,33085894,33086987,33090531,33092270,33096305,33096834,33098689,33099033,33099607,33102176,33103106,33105566,33105882,33105997,33107902,33108385,33141666,33141884,33161298	33085289,33085773,33085989,33087141,33090727,33092340,33096408,33096978,33098764,33099150,33099717,33102339,33103184,33105693,33105917,33106064,33108000,33108418,33141762,33141986,33161465	0.555556
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	126070623	126070624	126070623	-	High_confidence	10	11	14	0.322348	3.334679	chr10	126070617	126070770	LINE|CR1|X7A_LINE	-	chr10	126049602	126070633	ADAM12|ENST00000467145.1	-	126049602,126064805,126066716,126070386	126049669,126065001,126066806,126070633	0.785714
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	122897286	122897299	122897286	-	High_confidence	3	3	8	0.184199	2.521641	chr9	122897211	122897256	DNA|TcMar-Mariner|MADE1	-	chr9	122890170	122897534	RC3H2|ENST00000471874.2	-	122890170,122892908,122897278	122890545,122893026,122897534	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	39810023	39810099	39810033	-	High_confidence	56	56	244	5.618057	6.081663	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.823770
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31117598	31117610	31117607	-	High_confidence	4	6	14	0.322348	3.546594	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.928571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	39422938	39422939	39422938	-	RAMPAGE_only	6	7	8	0.184199	2.750000	chr13	39422758	39423139	LTR|ERVL-MaLR|THE1C	-	chr13	39342891	39603171	LHFPL6|ENST00000379589.3	-	39342891,39378427,39600831,39602882	39344054,39378526,39601390,39603171	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	23384824	23384866	23384865	-	High_confidence	25	29	61	1.404514	5.415061	chr21	23384605	23385150	LTR|ERVL|MLT2B3	-	chr21	23361103	23384861	D21S2088E|ENST00000262354.4	-	23361103,23364037,23372326,23372947,23384687	23362239,23364193,23372448,23373084,23384861	0.721311
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	1354324	1354325	1354324	+	High_confidence	6	6	6	0.138149	2.584963	chr19	1354143	1354390	SINE|Alu|AluSx	+	chr19	1354710	1360606	MSTRG.12262.1	+	1354710,1356323,1357008,1360135	1355020,1356449,1358464,1360606	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	52236182	52236239	52236226	-	RAMPAGE_only	7	12	46	1.059142	4.941744	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52167708	52291557	AL158066.1|ENST00000451298.1	-	52167708,52169986,52171157,52175638,52180581,52183975,52186682,52189638,52223238,52227004,52229325,52233063,52235219,52253744,52253936,52258528,52279840,52280651,52280861,52283237,52289821,52291506	52169304,52170099,52171248,52175776,52180654,52184114,52186823,52189914,52223331,52227096,52229431,52233144,52235281,52253833,52254018,52258590,52279905,52280715,52280961,52283357,52289983,52291557	0.695652
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	216107562	216107592	216107562	+	High_confidence	3	3	12	0.276298	3.095795	chr2	216107336	216107624	SINE|Alu|AluJo	+	chr2	216107463	216206303	XRCC5|ENST00000392133.7	+	216107463,216107652,216109090,216113015,216116658,216117745,216119042,216122061,216125916,216127535,216130874,216132324,216137087,216138088,216141185,216148082,216160067,216161978,216190224,216192638,216194918,216204321,216205187	216107532,216107698,216109457,216113129,216116842,216117794,216119165,216122253,216126031,216127674,216130987,216132387,216137225,216138179,216141319,216148276,216160161,216162048,216190334,216192735,216194986,216204396,216206303	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	30015972	30015976	30015972	-	High_confidence	6	6	11	0.253273	2.721928	chr11	30015938	30016024	DNA|hAT-Ac|OldhAT1	+	chr11	30012938	30016359	KCNA4|ENST00000526518.1	-	30012938,30016336	30013460,30016359	0.727273
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	235330459	235330460	235330459	+	RAMPAGE_only	6	9	9	0.207223	2.947703	chr1	235330202	235330492	SINE|Alu|AluYf1	+	chr1	235329028	235342559	GGPS1|ENST00000497327.1	+	235329028,235335241,235341707,235342010	235329183,235335334,235341778,235342559	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	34918377	34918381	34918377	+	RAMPAGE_only	4	4	10	0.230248	2.503258	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	172868110	172868139	172868110	+	RAMPAGE_only	2	4	10	0.230248	3.121928	chr5	172868100	172868295	SINE|MIR|MIR	-	chr5	172834274	172952685	ERGIC1|ENST00000393784.7	+	172834274,172888698,172897001,172909666,172914713,172924004,172926508,172932435,172935187,172950708	172834433,172888760,172897074,172909761,172914838,172924109,172926569,172932536,172935310,172952685	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	41976271	41976306	41976271	+	High_confidence	5	5	13	0.299323	3.026987	chr22	41975946	41976360	LINE|L2|L2c	+	chr22	41976271	41989589	SEPT3|ENST00000449288.5	+	41976271,41981644,41985983,41987205,41987621,41989566	41976583,41981836,41986112,41987287,41987759,41989589	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	155343313	155343324	155343321	-	RAMPAGE_only	9	10	28	0.644695	4.074720	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.785714
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	23849076	23849115	23849114	-	RAMPAGE_only	4	5	21	0.483521	4.037401	chr1	23848965	23849282	SINE|Alu|AluSq2	-	chr1	23845076	23868294	FUCA1|ENST00000374479.3	-	23845076,23846073,23848648,23854359,23859797,23863133,23865490,23867897	23845855,23846173,23848839,23854560,23859903,23863271,23865625,23868294	0.523810
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	134285	134315	134285	+	High_confidence	2	2	10	0.230248	3.121928	chr10	134050	134295	DNA|TcMar-Tigger|MER44A	-	chr10	134464	252470	ZMYND11|ENST00000397962.8	+	134464,179993,209888,221194,236837,237584,239437,240055,240892,242020,246765,247397,248335,248902,252347	134786,180128,210048,221356,236915,237677,239525,240111,240970,242139,246973,247466,248608,249088,252470	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	46087042	46087223	46087042	-	High_confidence	12	12	117	2.693904	6.089304	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.683761
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	44816812	44816866	44816826	+	RAMPAGE_only	3	3	21	0.483521	2.841446	chr5	44816752	44817108	LINE|L2|L2	+	chr5	44815218	44820428	MRPS30|ENST00000230914.4	+	44815218,44816442	44815563,44820428	0.952381
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	75336490	75336518	75336514	+	High_confidence	4	4	14	0.322348	3.026987	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.928571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	147173173	147173250	147173173	+	High_confidence	11	11	93	2.141309	5.777907	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.827957
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	104186531	104186538	104186537	-	High_confidence	8	8	15	0.345372	3.521641	chr10	104186433	104186569	LINE|L2|L2c	+	chr10	104129933	104186065	CFAP43|ENST00000434629.5	-	104129933,104131330,104132115,104133619,104140841,104142280,104143425,104145475,104147890,104152606,104161036,104161960,104162316,104164093,104166487,104167620,104168743,104172409,104179028,104179839,104182365,104185015,104185973	104130305,104131484,104132196,104133784,104141001,104142393,104143639,104145564,104147998,104152726,104161162,104162041,104162403,104164300,104166718,104167737,104168848,104172535,104179106,104179932,104182513,104185146,104186065	0.866667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	67791731	67791754	67791731	-	RAMPAGE_only	6	6	21	0.483521	3.880180	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701465	67833467	GNG12|ENST00000370982.3	-	67701465,67707593,67777457,67833343	67705576,67707712,67777507,67833467	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	26646849	26646904	26646874	+	High_confidence	6	8	40	0.920993	4.554124	chr22	26646780	26647058	LTR|Gypsy?|LTR85c	+	chr22	26646639	26665639	MIAT|ENST00000418918.5	+	26646639,26663315,26665456	26646959,26663398,26665639	0.650000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	163441840	163441850	163441840	+	RAMPAGE_only	10	10	23	0.529571	4.186704	chr6	163441471	163441975	LINE|L2|L2a	-	chr6	163428994	163534984	QKI|ENST00000545346.1	+	163428994,163455278,163457380,163478779,163534981	163429017,163455421,163457551,163478896,163534984	0.608696
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	42117114	42117137	42117133	-	RAMPAGE_only	2	2	9	0.207223	2.500000	chr17	42117078	42117181	LINE|CR1|L3	+	chr17	42114223	42115833	KAT2A|ENST00000588759.1	-	42114223,42114357,42114489,42114953,42115722	42114282,42114394,42114604,42115035,42115833	0.555556
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	119046572	119046605	119046604	-	RAMPAGE_only	5	6	18	0.414447	2.752715	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	146788287	146788288	146788287	+	RAMPAGE_only	8	8	10	0.230248	3.121928	chr6	146788237	146788400	DNA|TcMar-Tigger|Tigger9a	+	chr6	146801858	146807838	ADGB|ENST00000367489.2	+	146801858,146807401	146802011,146807838	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	34757079	34757101	34757079	+	High_confidence	6	6	16	0.368397	2.983459	chr6	34757127	34757285	LINE|L2|L2a	+	chr6	34757093	34773857	SNRPC|NM_003093.2	+	34757093,34757911,34762594,34767907,34770290,34773445	34757551,34757954,34762703,34767997,34770395,34773857	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	64326433	64326447	64326433	-	RAMPAGE_only	3	3	8	0.184199	2.750000	chr4	64326351	64326743	LTR|ERVL-MaLR|MLT1H	+	chr4	64298863	64322696	TECRL|ENST00000513125.5	-	64298863,64299973,64305165,64309825,64314647,64322688	64299249,64300017,64305238,64309931,64314763,64322696	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	51918501	51918572	51918501	-	RAMPAGE_only	5	5	40	0.920993	4.039608	chr1	51918370	51918613	LINE|CR1|L3	+	chr1	51907955	51990764	RAB3B|NM_002867.3	-	51907955,51933317,51937293,51976889,51990551	51920114,51933442,51937412,51977117,51990764	0.950000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	155478141	155478162	155478144	-	RAMPAGE_only	2	2	8	0.184199	2.521641	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	11356802	11356805	11356802	+	High_confidence	11	12	20	0.460496	3.681881	chr19	11356842	11356927	SINE|MIR|MIRc	+	chr19	11357695	11359894	PLPPR2|ENST00000588196.1	+	11357695,11359531	11357739,11359894	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	19681935	19681984	19681983	+	RAMPAGE_only	8	9	37	0.851918	4.243010	chr20	19682003	19682281	SINE|Alu|AluSz6	+	chr20	19212842	19722899	SLC24A3|ENST00000613834.1	+	19212842,19280958,19355137,19515487,19579999,19584970,19585440,19654061,19665863,19673600,19681857,19684175,19685099,19693258,19696796,19698567,19717527,19720990	19212984,19281083,19355141,19515564,19580074,19585055,19585544,19654136,19665889,19673654,19681991,19684336,19685361,19693425,19696911,19698680,19717593,19722899	0.918919
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	130692962	130692996	130692991	+	High_confidence	133	134	742	17.084419	6.754298	chr2	130693010	130693142	SINE|Alu|AluY	+	chr2	130693281	130696388	FAR2P3|ENST00000434289.1	+	130693281,130696341	130693796,130696388	0.861186
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	92224397	92224406	92224397	+	RAMPAGE_only	3	3	13	0.299323	3.546594	chr11	92224275	92224450	SINE|MIR|MIRc	+	chr11	92352095	92896452	FAT3|ENST00000409404.6	+	92352095,92524633,92697383,92761855,92764878,92774040,92789942,92792766,92797835,92805152,92806361,92809842,92831621,92834869,92836565,92837662,92840561,92843933,92857213,92859164,92866740,92880730,92882737,92886999,92890490	92355404,92524948,92697445,92762170,92765089,92774180,92790218,92792977,92801909,92805349,92806515,92810076,92832011,92835084,92836703,92837806,92840759,92844732,92857348,92859322,92867209,92880884,92883393,92887113,92896452	0.692308
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	28224872	28224886	28224885	+	High_confidence	3	3	8	0.184199	2.750000	chr6	28224900	28225028	LINE|L1|HAL1ME	+	chr6	28224885	28227207	ZSCAN9|ENST00000531941.1	+	28224885,28227011	28225268,28227207	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	37686860	37686914	37686860	+	High_confidence	11	13	46	1.059142	4.952638	chr22	37686834	37686893	LINE|L2|L2b	-	chr22	37686413	37726503	Z83844.1|ENST00000455236.4	+	37686413,37687909,37688311,37688849,37690696,37691173,37693331,37697587,37701305,37710426,37713209,37715762,37723184	37686475,37688015,37688360,37688992,37690794,37691424,37693410,37697696,37701479,37710566,37713411,37715934,37726503	0.913043
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	62704550	62704551	62704550	+	RAMPAGE_only	6	6	9	0.207223	2.750000	chr17	62704596	62704772	DNA|hAT-Charlie|MER5A	+	chr17	62706205	62737922	AC005821.1|ENST00000582564.1	+	62706205,62707431,62736085	62706469,62707607,62737922	0.555556
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	81473699	81473723	81473707	-	RAMPAGE_only	3	3	13	0.299323	3.584963	chr5	81473245	81473683	LINE|L1|L1PA8	-	chr5	81419978	81448063	SSBP2|ENST00000510060.5	-	81419978,81428584,81437429,81440557,81442652,81446867,81447909	81420533,81428683,81437458,81440636,81442723,81446922,81448063	0.769231
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	200888587	200888628	200888587	-	High_confidence	13	13	64	1.473589	5.232343	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.781250
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	50559082	50559116	50559115	+	High_confidence	5	5	18	0.414447	3.794653	chr14	50558973	50559175	LINE|L2|L2	-	chr14	50559086	50590957	ATL1|ENST00000555960.5	+	50559086,50560126,50587830,50590940	50559268,50560299,50588078,50590957	0.722222
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	54200536	54200558	54200557	+	High_confidence	9	9	16	0.368397	3.024397	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.562500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	23384744	23384776	23384775	-	High_confidence	8	8	28	0.644695	4.039149	chr21	23384605	23385150	LTR|ERVL|MLT2B3	-	chr21	23361103	23384835	D21S2088E|NR_040254.1	-	23361103,23364037,23372326,23372947,23384687	23362239,23364193,23372448,23373084,23384835	0.821429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	129488817	129488857	129488856	+	High_confidence	8	8	21	0.483521	3.471354	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.809524
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	141332616	141332617	141332616	-	High_confidence	37	37	37	0.851918	3.934825	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.972973
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	32446972	32446990	32446977	+	High_confidence	43	45	132	3.039277	5.750204	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.931818
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	37556764	37556784	37556764	+	High_confidence	8	8	18	0.414447	3.836592	chr1	37556628	37556767	SINE|MIR|MIRc	-	chr1	37556918	37566857	DNALI1|ENST00000296218.7	+	37556918,37557602,37559326,37561556,37562080,37565025	37557075,37557748,37559496,37561735,37562245,37566857	0.944444
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31119558	31119559	31119558	-	High_confidence	4	4	6	0.138149	2.584963	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	18149848	18149869	18149868	+	High_confidence	9	9	32	0.736794	4.260333	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.968750
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	232584532	232584558	232584532	-	High_confidence	12	12	19	0.437472	3.221097	chr2	232584416	232584592	LTR|ERVL|LTR50	-	chr2	232581150	232584791	AC073254.1|ENST00000447488.2	-	232581150,232584305	232581304,232584791	0.947368
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	46563937	46563938	46563937	-	RAMPAGE_only	4	4	7	0.161174	2.584963	chr20	46563921	46564094	DNA|hAT-Charlie|MER5A	-	chr20	46559993	46613886	SLC13A3|ENST00000495082.5	-	46559993,46563413,46566228,46575572,46583571,46588058,46589159,46592403,46596156,46599970,46610445,46613459	46560198,46563551,46566390,46575685,46583669,46588163,46589255,46592529,46596342,46600037,46610609,46613886	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	190442622	190442626	190442625	+	High_confidence	4	4	9	0.207223	2.947703	chr2	190442314	190442925	LINE|L2|L2	-	chr2	190442575	190469855	MFSD6|ENST00000489793.1	+	190442575,190469757	190443005,190469855	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	109532691	109532736	109532728	+	RAMPAGE_only	2	2	10	0.230248	2.947703	chr4	109532709	109532882	LTR|ERVL|LTR41B	-	chr4	109433814	109540896	SEC24B|ENST00000265175.5	+	109433814,109462900,109473003,109481676,109491326,109494614,109506327,109510008,109511956,109513746,109516527,109520365,109521116,109521419,109524817,109525345,109526225,109527321,109530288,109531384,109532638,109533592,109538492,109539560	109434002,109463644,109473186,109481781,109491407,109494856,109506512,109510111,109512083,109513856,109516640,109520484,109521172,109521626,109524941,109525504,109526399,109527432,109530464,109531522,109532743,109533685,109538596,109540896	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	95874701	95874755	95874717	-	RAMPAGE_only	4	5	16	0.368397	3.500000	chr10	95874049	95875624	LTR|ERVL-MaLR|THE1A-int	-	chr10	95866320	95907775	MSTRG.3222.3	-	95866320,95904829,95907662	95876660,95904938,95907775	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	103056475	103056517	103056480	-	RAMPAGE_only	3	3	13	0.299323	3.418296	chr11	103055937	103056716	LINE|L2|L2a	+	chr11	103050686	103092148	MSTRG.4627.1	-	103050686,103064274,103066268,103066458,103083255,103089226,103091786	103062414,103064377,103066373,103066567,103083326,103089318,103092148	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	123060115	123060257	123060137	-	High_confidence	101	157	1312	30.208568	5.790307	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.617378
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	119110868	119110891	119110890	+	High_confidence	9	16	29	0.667720	4.162295	chr11	119110843	119110902	LINE|CR1|L3b	+	chr11	119111056	119117121	C2CD2L|ENST00000528586.2	+	119111056,119111262,119111520,119112327,119112481,119112699,119113610,119113854,119114079,119116024	119111168,119111374,119111629,119112392,119112609,119112874,119113712,119113988,119114365,119117121	0.931034
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	170259912	170259925	170259912	+	RAMPAGE_only	5	5	10	0.230248	2.947703	chr4	170259715	170259944	LTR|ERVL|LTR33C	-	chr4	170273918	170283079	LINC01612|ENST00000504509.1	+	170273918,170276581,170282750	170273964,170276675,170283079	0.600000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	149608350	149608363	149608350	-	RAMPAGE_only	3	3	6	0.138149	2.584963	chr6	149608148	149609381	LINE|L1|L1MA5	+	chr6	149598052	149603373	KATNA1|ENST00000481905.5	-	149598052,149601593,149603267	149598350,149601752,149603373	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	57104643	57104704	57104669	+	RAMPAGE_only	3	3	19	0.437472	3.794653	chr6	57104625	57104697	LINE|L1|L1MB2	-	chr6	57090075	57109716	ZNF451|ENST00000370708.8	+	57090075,57090810,57099060,57100602	57090274,57090894,57099141,57109716	0.947368
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	78604293	78604504	78604375	+	RAMPAGE_only	43	45	390	8.979681	5.639375	chr8	78604183	78604412	SINE|MIR|MIRb	-	chr8	78516138	78605267	PKIA|ENST00000396418.6	+	78516138,78572810,78598357,78601741	78516468,78572939,78598535,78605267	0.994872
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	111225599	111225642	111225599	+	RAMPAGE_only	2	2	9	0.207223	3.169925	chrX	111225566	111225766	SINE|MIR|MIR3	+	chrX	111123076	111227361	PAK3|NM_001128172.2	+	111123076,111142095,111144859,111147736,111152409,111162914,111163561,111173017,111192126,111192505,111194300,111195841,111196443,111216420,111220357	111123278,111142196,111144922,111147890,111152447,111163046,111163727,111173081,111192175,111192618,111194418,111195941,111196640,111216558,111227361	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	158510415	158510441	158510415	+	RAMPAGE_only	9	10	19	0.437472	3.721612	chr6	158510327	158510475	SINE|MIR|MIR3	+	chr6	158312659	158511828	TULP4|NM_020245.4	+	158312659,158413064,158429735,158448995,158452133,158461562,158479750,158481054,158489587,158493572,158494752,158498668,158501677,158506577	158314268,158413193,158429897,158449176,158452268,158461729,158479975,158481289,158489732,158493717,158494846,158498812,158504178,158511828	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	3063041	3063107	3063106	-	High_confidence	7	7	44	1.013092	5.169548	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3063107	AES|ENST00000221561.12	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3063107	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	75879161	75879162	75879161	+	RAMPAGE_only	9	10	10	0.230248	3.121928	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75868950	75899577	UBE2Q2|ENST00000567921.1	+	75868950,75873427,75883365,75896994,75899426	75869010,75873568,75883424,75897061,75899577	0.700000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	68975842	68975855	68975842	-	High_confidence	7	7	31	0.713770	3.950344	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.677419
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	72562208	72562229	72562208	+	High_confidence	3	3	8	0.184199	2.750000	chr12	72562199	72562318	LINE|RTE-BovB|MamRTE1	+	chr12	72562851	72582520	TRHDE|ENST00000549401.5	+	72562851,72568567,72575254,72575486,72582226	72563040,72568656,72575388,72575542,72582520	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	200411799	200411814	200411813	+	High_confidence	4	5	8	0.184199	3.000000	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411799	200475513	AC104461.1|ENST00000634596.1	+	200411799,200473908	200411962,200475513	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	107580498	107580507	107580498	+	High_confidence	3	3	7	0.161174	2.807355	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580467	107583982	BCAP29|ENST00000473124.1	+	107580467,107583881	107580864,107583982	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	47500697	47500748	47500697	+	RAMPAGE_only	5	5	25	0.575621	3.779471	chr20	47500403	47500991	LINE|L2|L2a	-	chr20	47501856	47656877	NCOA3|NM_006534.3	+	47501856,47583182,47622228,47623910,47625380,47627001,47627560,47627921,47633495,47634047,47635321,47635890,47637647,47639007,47639576,47639924,47642212,47647072,47649004,47650981,47652405,47652930,47653405	47502019,47583261,47622330,47624083,47625481,47627176,47627749,47628023,47633636,47634195,47635713,47636762,47637783,47639202,47639822,47640051,47642384,47647366,47649097,47651276,47652580,47653072,47656877	0.760000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	197615625	197615626	197615625	-	RAMPAGE_only	5	6	7	0.161174	2.584963	chr3	197614452	197615925	LTR|ERV1|MER4-int	-	chr3	197614026	197627881	LOC220729|NR_003266.2	-	197614026,197615563,197619739,197621703,197622186,197623219,197624111,197627779	197614622,197615685,197619888,197621868,197622330,197623382,197624197,197627881	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	158167208	158167224	158167208	-	RAMPAGE_only	2	3	8	0.184199	2.807355	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158124579	158172566	FAM198B|NM_016613.6	-	158124579,158130785,158155610,158170465,158172338	158127614,158131012,158155825,158171599,158172566	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	23656534	23656547	23656534	-	High_confidence	8	8	14	0.322348	3.392747	chr20	23656448	23656550	DNA|hAT-Charlie|MER5A1	-	chr20	23655224	23656390	AL121894.1|ENST00000450971.1	-	23655224,23656324	23655594,23656390	0.785714
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	143281653	143281687	143281686	-	High_confidence	95	108	354	8.150787	5.565707	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.669492
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	2242922	2242923	2242922	+	High_confidence	11	11	11	0.253273	3.095795	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	144106344	144106394	144106382	+	High_confidence	4	4	14	0.322348	3.378783	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50756920	50756950	50756949	+	High_confidence	13	13	32	0.736794	4.631616	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	2972164	2972191	2972164	-	High_confidence	6	6	21	0.483521	3.621928	chr6	2971942	2972236	SINE|Alu|AluSz	+	chr6	2948158	2972165	SERPINB6|NM_001297699.1	-	2948158,2948913,2953043,2954591,2955523,2959167,2971247	2948699,2949069,2953186,2954709,2955670,2959342,2972165	0.952381
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	33813222	33813223	33813222	+	RAMPAGE_only	9	9	14	0.322348	3.182006	chr20	33812865	33813547	LINE|L2|L2a	-	chr20	33811303	33854367	CHMP4B|NM_176812.4	+	33811303,33848466,33850951,33852076,33853495	33811658,33848644,33851066,33852203,33854367	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	196593924	196593944	196593943	-	High_confidence	6	6	16	0.368397	3.452820	chr2	196593879	196593974	SINE|MIR|MIRc	+	chr2	196199350	196593692	HECW2|ENST00000644978.1	-	196199350,196215864,196217007,196220038,196220794,196222210,196225771,196228101,196240448,196242083,196253919,196257822,196271192,196274020,196278527,196292564,196306487,196307129,196307934,196317273,196318551,196320338,196322477,196324979,196329574,196334423,196343656,196433131,196593507	196201388,196215977,196217093,196220153,196220941,196222340,196225870,196228254,196240562,196242204,196254029,196257906,196271289,196274123,196278662,196292750,196306612,196307233,196308085,196317369,196319904,196320439,196322620,196325149,196329650,196334518,196343764,196433458,196593692	0.812500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	48111154	48111194	48111154	-	RAMPAGE_only	2	2	14	0.322348	3.664498	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47856108	48069135	MSTRG.21354.1	-	47856108,48008633,48068229,48068952	47879936,48009114,48068641,48069135	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	193614816	193614861	193614860	+	High_confidence	7	8	34	0.782844	3.714870	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.970588
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	88611859	88611860	88611859	-	High_confidence	6	6	8	0.184199	2.807355	chr5	88611830	88613057	LINE|L1|L1MDa	+	chr5	88540510	88611776	LINC00461|ENST00000506664.5	-	88540510,88542034,88611663	88541123,88542070,88611776	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	113912720	113912735	113912720	+	RAMPAGE_only	1	1	7	0.161174	2.584963	chr10	113912633	113912770	SINE|MIR|MIRc	-	chr10	113854660	113917194	NHLRC2|ENST00000369301.3	+	113854660,113858527,113876520,113879573,113884250,113898109,113901665,113902470,113903526,113904816,113908279	113855050,113858680,113876976,113879695,113884380,113898209,113901897,113902593,113903736,113905036,113917194	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	77491048	77491099	77491098	-	High_confidence	6	7	22	0.506546	3.463281	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77453865	77491285	WDR41|ENST00000504895.5	-	77453865,77459061,77463094,77464760,77489456,77491192	77453928,77459124,77463226,77464809,77489572,77491285	0.954545
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	216107457	216107462	216107461	+	High_confidence	5	7	12	0.276298	3.277613	chr2	216107336	216107624	SINE|Alu|AluJo	+	chr2	216107463	216206303	XRCC5|ENST00000392133.7	+	216107463,216107652,216109090,216113015,216116658,216117745,216119042,216122061,216125916,216127535,216130874,216132324,216137087,216138088,216141185,216148082,216160067,216161978,216190224,216192638,216194918,216204321,216205187	216107532,216107698,216109457,216113129,216116842,216117794,216119165,216122253,216126031,216127674,216130987,216132387,216137225,216138179,216141319,216148276,216160161,216162048,216190334,216192735,216194986,216204396,216206303	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	40763172	40763173	40763172	+	RAMPAGE_only	7	7	7	0.161174	2.807355	chr12	40762868	40763291	LTR|ERVL-MaLR|MSTB	+	chr12	40827937	40972717	CNTN1|NM_001256064.1	+	40827937,40908356,40910072,40918638,40922255,40924556,40929795,40933460,40933696,40936780,40937569,40939334,40943596,40943994,40959113,40971433	40828301,40908493,40910105,40918771,40922428,40924652,40930002,40933560,40933878,40936905,40937687,40939485,40943724,40944170,40959234,40972717	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	46512754	46512756	46512755	-	High_confidence	7	10	12	0.276298	3.418296	chr20	46512687	46512773	SINE|MIR|MIR1_Amn	+	chr20	46499631	46513554	ZNF334|ENST00000347606.8	-	46499631,46504213,46504613,46512081,46513409	46503097,46504306,46504740,46512140,46513554	0.583333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	9406446	9406459	9406446	-	RAMPAGE_only	3	3	14	0.322348	3.546594	chr12	9406304	9406453	LTR|ERV1|HERVE-int	+	chr12	9398354	9414851	AC141557.1|ENST00000540982.1	-	9398354,9400235,9402426,9414802	9398484,9400326,9402556,9414851	0.642857
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	63457504	63457505	63457504	-	RAMPAGE_only	4	4	7	0.161174	2.521641	chr15	63457441	63457637	DNA|hAT|MamRep38	-	chr15	63456293	63469351	AC007950.1|ENST00000560465.1	-	63456293,63469158,63469305	63456817,63469203,63469351	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	143853173	143853237	143853236	-	RAMPAGE_only	14	17	117	2.693904	6.243150	chr7	143853075	143853314	SINE|Alu|AluJr	-	chr7	143851367	143885373	TCAF1|NM_001206941.1	-	143851367,143857099,143858823,143860207,143861094,143862415,143862801,143885209	143854142,143857350,143859161,143860447,143861308,143862513,143863796,143885373	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	53614552	53614554	53614552	-	RAMPAGE_only	5	7	9	0.207223	2.947703	chrX	53614388	53614509	SINE|MIR|MIR3	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	180886989	180887035	180887034	+	RAMPAGE_only	28	32	55	1.266365	5.245447	chr1	180886892	180887197	SINE|Alu|AluSg	+	chr1	180632009	180890279	XPR1|NM_001135669.1	+	180632009,180682359,180787752,180803387,180806061,180806473,180811406,180824752,180825164,180834873,180863707,180873802,180880075,180884005	180632270,180682411,180787854,180803611,180806211,180806557,180811488,180824943,180825344,180835045,180863874,180873942,180880297,180890279	0.981818
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	13544591	13544749	13544674	-	RAMPAGE_only	8	8	108	2.486681	5.439562	chr12	13542496	13545457	LINE|L2|L2a	+	chr12	13537336	13980363	GRIN2B|ENST00000609686.3	-	13537336,13567024,13569829,13571803,13608602,13611724,13615113,13615492,13616454,13675744,13753316,13865797,13979927	13564639,13567263,13570017,13571964,13608832,13611850,13615267,13615664,13616657,13675859,13753915,13866226,13980363	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	163445795	163445799	163445795	+	RAMPAGE_only	3	4	6	0.138149	2.584963	chr6	163445615	163445913	SINE|Alu|AluY	-	chr6	163455215	163563461	QKI|ENST00000544823.5	+	163455215,163478779,163534981,163561981,163563419	163455421,163478896,163535125,163562069,163563461	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	57532029	57532075	57532029	-	RAMPAGE_only	2	3	13	0.299323	3.418296	chr12	57531960	57532134	LINE|RTE-BovB|MamRTE1	+	chr12	57530310	57547141	DCTN2|ENST00000434715.7	-	57530310,57532014,57532212,57532571,57532732,57532983,57533237,57533952,57534291,57535055,57535483,57535748,57538518,57541363,57546027,57547027	57530775,57532106,57532315,57532643,57532810,57533022,57533303,57534097,57534452,57535154,57535545,57535845,57538524,57541372,57546096,57547141	0.846154
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	31376356	31376357	31376356	-	High_confidence	111	113	113	2.601805	4.353850	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.929204
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	172387311	172387352	172387351	+	RAMPAGE_only	3	3	14	0.322348	2.896292	chr1	172387375	172387672	SINE|Alu|AluYj4	+	chr1	171841499	172408354	DNM3|ENST00000355305.9	+	171841499,171921747,171987655,171988944,172032401,172033104,172038318,172042008,172044384,172048611,172068818,172081831,172092823,172093695,172131174,172253572,172308727,172379017,172387132,172388572,172407771	171841817,171921821,171987805,171989148,172032500,172033265,172038461,172042144,172044452,172048750,172068905,172081902,172092875,172093725,172131288,172253682,172308839,172379182,172387359,172388809,172408354	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	137877224	137877271	137877270	+	RAMPAGE_only	5	5	20	0.460496	4.037401	chr5	137877087	137877391	SINE|Alu|AluY	+	chr5	137867875	137887528	MYOT|ENST00000515645.1	+	137867875,137870440,137870876,137875828,137877519,137880815,137881972,137883383,137886047,137886863,137887212	137867953,137870525,137871007,137876003,137877621,137880865,137882105,137883591,137886213,137886997,137887528	0.950000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	43080108	43080109	43080108	+	RAMPAGE_only	6	6	8	0.184199	2.750000	chr8	43078293	43080600	DNA|TcMar-Tigger|Tigger1	+	chr8	43076646	43085780	FNTA|ENST00000525099.1	+	43076646,43084709,43085159	43083180,43084881,43085780	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	34244753	34244812	34244780	-	High_confidence	6	6	41	0.944018	4.631305	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244796	MSTRG.19618.2	-	34175821,34179012,34182679,34200820,34218294,34239374,34244615	34175957,34179097,34182867,34200921,34218450,34239448,34244796	0.658537
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	35593084	35593108	35593107	+	High_confidence	25	28	44	1.013092	4.771598	chr13	35593078	35593135	SINE|MIR|MIR3	-	chr13	35593005	35672735	NBEA|ENST00000379922.3	+	35593005,35606425,35628080,35645868,35646258,35649654,35651804,35654854,35655578,35665084,35667373,35668367,35670900	35593447,35606578,35628248,35645931,35646348,35649847,35651876,35655010,35655749,35665186,35667570,35668519,35672735	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	26508869	26509097	26508869	-	RAMPAGE_only	11	11	100	2.302482	6.029517	chr8	26507740	26508856	LTR|Gypsy|MamGyp-int	-	chr8	26504679	26513967	PNMA2|NM_007257.5	-	26504679,26509547,26513815	26509243,26509677,26513967	0.990000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	36981013	36981030	36981027	-	High_confidence	3	3	10	0.230248	2.947703	chr21	36980978	36981177	LINE|L2|L2b	+	chr21	36750887	36980964	HLCS|ENST00000612277.4	-	36750887,36756541,36759726,36765011,36767217,36896859,36930250,36936448,36938831,36946008,36962035,36980783	36754417,36756755,36759841,36765172,36767285,36897131,36930433,36937392,36938994,36946154,36962170,36980964	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	76084220	76084245	76084220	+	High_confidence	4	4	17	0.391422	3.375000	chr5	76084199	76084242	LINE|L2|L2a	-	chr5	76083413	76353939	SV2C|ENST00000322285.7	+	76083413,76131649,76194918,76209735,76285161,76285780,76291220,76291767,76295777,76298793,76300728,76301385,76353129	76083512,76132330,76195099,76209887,76285295,76285870,76291331,76291856,76295942,76298927,76300932,76301545,76353939	0.882353
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	58314833	58314861	58314860	+	RAMPAGE_only	3	3	9	0.207223	2.641604	chr19	58314839	58315267	LTR|ERVK|LTR3	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	17005385	17005503	17005385	-	High_confidence	7	9	56	1.289390	4.905363	chr1	17005163	17005347	SINE|MIR|MIR3	-	chr1	17000282	17005395	ATP13A2|ENST00000508222.5	-	17000282,17000399,17002033,17002295,17004331,17004706,17005013,17005373	17000312,17000507,17002103,17002373,17004411,17004821,17005072,17005395	0.892857
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	77737002	77737056	77737002	-	High_confidence	3	3	21	0.483521	3.368042	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	70250413	70250463	70250462	-	RAMPAGE_only	6	6	23	0.529571	3.621176	chr16	70250387	70250696	SINE|Alu|AluSx	+	chr16	70246777	70251930	EXOSC6|ENST00000435634.2	-	70246777	70251930	0.913043
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	51908765	51909006	51908840	-	RAMPAGE_only	19	29	298	6.861397	4.792143	chr1	51908764	51908943	SINE|MIR|MIRc	+	chr1	51907955	51990764	RAB3B|NM_002867.3	-	51907955,51933317,51937293,51976889,51990551	51920114,51933442,51937412,51977117,51990764	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	84279967	84279968	84279967	+	High_confidence	11	12	13	0.299323	3.084963	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279990	84288995	LINC00858|ENST00000437892.1	+	84279990,84288223,84288593	84280065,84288420,84288995	0.615385
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	3195772	3195783	3195772	-	High_confidence	166	170	368	8.473135	6.026106	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.964674
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	20950671	20950690	20950689	+	RAMPAGE_only	3	4	7	0.161174	2.807355	chr22	20950428	20950713	SINE|Alu|AluSx	-	chr22	20917425	20953749	CRKL|ENST00000354336.7	+	20917425,20933778,20949710	20918245,20934244,20953749	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	58851957	58851958	58851957	+	RAMPAGE_only	6	7	8	0.184199	3.000000	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	38121472	38121492	38121491	+	High_confidence	4	4	13	0.299323	3.546594	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	201824487	201824728	201824727	+	RAMPAGE_only	19	19	194	4.466816	4.784238	chr1	201824764	201824936	DNA|hAT-Charlie|MER5A	+	chr1	201739867	201826969	NAV1|ENST00000367295.5	+	201739867,201780420,201781011,201782175,201783405,201785309,201786428,201788467,201789739,201790553,201790688,201793791,201794465,201803592,201807952,201808417,201808702,201809163,201809441,201809945,201810522,201811602,201811902,201812464,201813139,201817087,201819836	201740076,201780559,201781309,201782869,201783852,201785351,201786577,201788638,201789792,201790577,201790766,201793875,201794577,201803714,201808149,201808610,201808871,201809261,201809537,201810105,201810758,201811757,201811974,201812661,201813258,201817285,201826969	0.989691
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	11324859	11325001	11324859	+	RAMPAGE_only	46	47	139	3.200450	5.797798	chr8	11324706	11324870	SINE|Alu|AluJo	+	chr8	11284490	11328146	MTMR9|NM_015458.3	+	11284490,11295193,11300022,11304840,11306189,11309526,11314922,11316672,11319686,11322624	11285070,11295302,11300148,11305014,11306407,11309688,11315064,11316893,11319838,11328146	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	54759973	54759974	54759973	-	High_confidence	76	79	93	2.141309	5.257015	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.946237
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	21740093	21740108	21740107	+	RAMPAGE_only	4	6	11	0.253273	3.277613	chr6	21739913	21740139	LINE|L2|L2b	-	chr6	21668818	22194385	CASC15|ENST00000607048.5	+	21668818,21783631,21802656,21909469,21978944,22020338,22056545,22110746,22113916,22173997,22191566,22194044	21668899,21783708,21802740,21909603,21979062,22020542,22056690,22110920,22114037,22174062,22191656,22194385	0.818182
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	175874976	175874998	175874997	+	RAMPAGE_only	3	3	10	0.230248	2.947703	chr5	175874579	175875409	LINE|L2|L2b	-	chr5	175872809	175879873	CPLX2|ENST00000502265.5	+	175872809,175878651,175878907,175879847	175873020,175878770,175879083,175879873	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	61949784	61949821	61949820	+	High_confidence	8	8	30	0.690745	4.021268	chr11	61949804	61949945	SINE|MIR|MIR3	-	chr11	61949820	61964461	BEST1|ENST00000378043.8	+	61949820,61951770,61955106,61955717,61956843,61957386,61958145,61959497,61959891,61962254,61964103	61950427,61951958,61955201,61955951,61956998,61957464,61958298,61959578,61960043,61962893,61964461	0.966667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	107837220	107837237	107837236	+	RAMPAGE_only	3	3	11	0.253273	2.646439	chr2	107837188	107837494	SINE|Alu|AluJo	-	chr2	107826936	107890841	RGPD4|ENST00000408999.3	+	107826936,107836601,107838256,107838811,107843008,107843584,107848340,107854555,107856759,107859113,107859378,107859721,107860765,107861193,107861593,107862681,107862948,107866189,107869882,107870704,107879967,107882671,107890720	107827085,107836669,107838368,107838964,107843239,107843730,107848536,107854643,107856969,107859295,107859554,107859845,107860927,107861331,107861740,107862861,107863032,107866325,107869977,107872928,107880107,107882873,107890841	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	36457703	36457704	36457703	-	RAMPAGE_only	8	8	8	0.184199	2.500000	chr4	36457523	36457903	LTR|ERVL-MaLR|THE1C	-	chr4	36065997	36244509	ARAP2|ENST00000303965.8	-	36065997,36073688,36080215,36082250,36083367,36091880,36107564,36114169,36117060,36119649,36121178,36124861,36128532,36133225,36147295,36147547,36148404,36150899,36158729,36159330,36160458,36161464,36164913,36166931,36177826,36187450,36193577,36210389,36212395,36213242,36214421,36228581,36244178	36068278,36073823,36080279,36082286,36083450,36092020,36107693,36114287,36117135,36119718,36121326,36124967,36128745,36133389,36147359,36147746,36148507,36151044,36158864,36159505,36160641,36161550,36165113,36167047,36178005,36187571,36193647,36210743,36212487,36213319,36214480,36229645,36244509	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	10380556	10380669	10380576	+	RAMPAGE_only	15	15	204	4.697064	4.987926	chr1	10380425	10380719	SINE|Alu|AluSx	+	chr1	10232328	10381596	KIF1B|ENST00000620295.2	+	10232328,10256246,10258492,10261904,10267379,10268151,10271501,10272240,10273013,10275427,10276320,10277985,10282321,10291081,10292046,10295085,10295659,10296581,10296896,10297173,10320042,10321708,10323883,10324757,10326110,10334519,10336656,10337073,10337370,10339768,10342049,10343231,10345844,10347760,10348648,10352630,10360928,10361691,10363282,10365099,10365408,10368466,10371140,10374315,10374853,10375254,10378338	10232434,10256323,10258672,10261970,10267558,10268263,10271579,10272306,10273031,10275503,10276399,10278128,10282533,10291161,10292122,10295165,10295766,10296665,10297077,10297246,10320136,10321857,10324062,10324895,10326359,10334638,10336742,10337203,10337533,10339859,10342168,10343287,10345953,10347827,10348733,10352736,10361043,10361825,10363344,10365245,10365648,10368538,10371262,10374465,10375046,10375373,10381596	0.970588
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	73080440	73080464	73080463	-	High_confidence	3	3	11	0.253273	3.027169	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.818182
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	52169761	52169762	52169761	-	High_confidence	5	5	8	0.184199	2.750000	chr19	52169654	52169811	SINE|Alu|AluJb	+	chr19	52157365	52170386	ZNF836|ENST00000596428.5	-	52157365,52160464,52168057,52169647,52170359	52157540,52160591,52168152,52169781,52170386	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	83808533	83808562	83808533	+	High_confidence	5	5	14	0.322348	3.180833	chr16	83808490	83808599	SINE|MIR|MIR3	-	chr16	83808061	83811503	HSBP1|ENST00000567382.1	+	83808061,83809304,83811420	83808746,83809425,83811503	0.785714
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	31587007	31587010	31587009	+	High_confidence	19	33	43	0.990067	4.553056	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.906977
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	15001756	15001770	15001766	+	High_confidence	7	7	18	0.414447	3.836592	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.722222
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	54448824	54448847	54448846	-	High_confidence	7	7	13	0.299323	2.931209	chr19	54448651	54448966	SINE|Alu|AluSg	+	chr19	54445035	54448602	LENG8-AS1|ENST00000416022.1	-	54445035,54448164	54445179,54448602	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	110936582	110936585	110936584	+	High_confidence	13	18	22	0.506546	4.021928	chr12	110936431	110936780	LTR|ERVL-MaLR|THE1D	+	chr12	110936601	110937451	LINC01405|ENST00000331096.2	+	110936601,110937184	110936698,110937451	0.545455
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	36481305	36481346	36481305	-	High_confidence	13	15	72	1.657787	4.777383	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.819444
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	137268114	137268178	137268177	-	High_confidence	15	15	62	1.427539	4.856791	chr7	137267941	137268351	LTR|ERV1|HERVE_a-int	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.967742
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	29970337	29970359	29970358	-	High_confidence	5	5	20	0.460496	3.932138	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	227758596	227758625	227758624	+	RAMPAGE_only	6	6	13	0.299323	3.251629	chr1	227758567	227758649	DNA|hAT-Charlie|MER3	-	chr1	227748153	227770744	SNAP47|ENST00000478768.2	+	227748153,227758994,227766958,227770570	227748233,227759485,227767083,227770744	0.846154
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	2881285	2881286	2881285	-	High_confidence	9	10	10	0.230248	2.641604	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	2867786	2867836	2867814	+	High_confidence	5	6	23	0.529571	3.975418	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.913043
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	143020977	143020996	143020977	+	RAMPAGE_only	4	6	12	0.276298	3.084963	chr8	143021012	143021252	LINE|L2|L2b	+	chr8	143018556	143021892	LY6E|ENST00000522024.1	+	143018556,143018832,143020887,143021313,143021565	143018586,143019119,143020991,143021433,143021892	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	31391050	31391081	31391062	+	High_confidence	3	3	16	0.368397	3.577820	chr17	31391083	31391212	SINE|MIR|MIR	+	chr17	31391623	31538217	RAB11FIP4|ENST00000621161.4	+	31391623,31431812,31434033,31517650,31521165,31521914,31522359,31523511,31523892,31525089,31527841,31528405,31528619,31530325,31531615	31392011,31431900,31434122,31517877,31521360,31522049,31522395,31523611,31523996,31525230,31527923,31528543,31528778,31530469,31538217	0.562500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	176630691	176630720	176630719	+	High_confidence	2	2	8	0.184199	2.807355	chr5	176630696	176630861	SINE|MIR|MIRb	+	chr5	176630681	176642737	EIF4E1B|ENST00000510473.5	+	176630681,176642042,176642709	176631051,176642177,176642737	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	1983267	1983273	1983271	-	RAMPAGE_only	12	21	33	0.759819	4.026619	chr1	1983141	1983370	LINE|L1|L1MC4	+	chr1	1955147	2003714	CFAP74|ENST00000468610.5	-	1955147,1955690,1956619,1959119,1959963,1963748,1964887,1966370,1968634,1970658,1971979,1972936,1974024,1985385,1986936,1988511,1988888,1990889,2003700	1955523,1955850,1956784,1959209,1960030,1963867,1965061,1966526,1968833,1970816,1972082,1973047,1974198,1985490,1987035,1988655,1988973,1990975,2003714	0.939394
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	112227200	112227225	112227202	+	High_confidence	13	20	82	1.888035	5.492576	chr11	112227196	112227258	SINE|MIR|MIR	+	chr11	112226431	112233810	PTS|ENST00000525803.1	+	112226431,112228593,112233162,112233431	112226526,112228673,112233233,112233810	0.853659
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	4736349	4736367	4736349	-	High_confidence	2	2	8	0.184199	2.521641	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	93959573	93959574	93959573	+	RAMPAGE_only	13	13	13	0.299323	3.334679	chr7	93959443	93959993	LTR|ERVL-MaLR|MLT1F2	-	chr7	94656324	94669695	PEG10|ENST00000482108.1	+	94656324,94663333	94656580,94669695	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	110450804	110450822	110450804	-	High_confidence	4	4	16	0.368397	3.577820	chr12	110450569	110450861	SINE|Alu|AluSx1	+	chr12	110444882	110450422	ARPC3|ENST00000475777.2	-	110444882,110450254	110445551,110450422	0.812500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	92678192	92678252	92678212	-	RAMPAGE_only	4	7	26	0.598645	4.103910	chr15	92678051	92678466	LTR|ERVL-MaLR|MSTC	-	chr15	92619182	92668043	FAM174B|ENST00000557480.5	-	92619182,92630213,92667897	92619459,92630345,92668043	0.846154
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	180830712	180830748	180830747	+	High_confidence	3	3	10	0.230248	3.321928	chr5	180830726	180830835	LTR|ERV1|MER67A	-	chr5	180830956	180835726	LINC00847|NR_045678.1	+	180830956,180831758,180834311	180831229,180831941,180835726	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	9256267	9256352	9256267	+	RAMPAGE_only	3	3	36	0.828894	4.071894	chr18	9255910	9256385	LINE|L1|HAL1b	+	chr18	9216779	9283759	MSTRG.11805.22	+	9216779,9221851,9239476,9254210,9263789,9275523,9279548,9280940	9216900,9221999,9239556,9258931,9263888,9275667,9279644,9283759	0.944444
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	97521626	97521666	97521630	-	High_confidence	4	4	13	0.299323	3.546594	chr15	97521399	97521640	SINE|tRNA|LFSINE_Vert	+	chr15	97370370	97521811	LINC02254|ENST00000558621.2	-	97370370,97397656,97427650,97515286,97521580	97371341,97397740,97427952,97515424,97521811	0.692308
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	23359300	23359445	23359310	-	RAMPAGE_only	12	12	159	3.660947	5.381303	chr19	23359221	23359506	SINE|Alu|AluY	-	chr19	23303768	23395418	MSTRG.12864.4	-	23303768,23338726,23342169,23358429,23373741,23374637,23395324	23309097,23338887,23342265,23362725,23373837,23374764,23395418	0.987421
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	30876016	30876055	30876016	+	High_confidence	11	12	98	2.256433	5.752688	chr16	30875869	30876035	SINE|MIR|MIRc	-	chr16	30875911	30895220	MIR762HG|ENST00000565573.1	+	30875911,30888713,30894547	30876118,30888958,30895220	0.897959
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	115296267	115296287	115296279	-	High_confidence	2	2	9	0.207223	3.000000	chr5	115296013	115296236	SINE|MIR|MIRb	-	chr5	115267187	115296290	CCDC112|NM_152549.2	-	115267187,115268881,115269702,115271212,115275215,115275993,115276964,115279646,115284786,115295909	115267918,115269000,115269798,115271626,115275606,115276069,115277054,115279768,115284908,115296290	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	48868595	48868631	48868613	-	High_confidence	191	222	822	18.926405	7.508778	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.989051
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	54215768	54215799	54215768	+	RAMPAGE_only	15	15	83	1.911060	5.034577	chr3	54215784	54215885	DNA|hAT-Charlie|Charlie18a	+	chr3	54177795	54562915	CACNA2D3|ENST00000492460.5	+	54177795,54320441,54386714,54503491,54562799	54177898,54320558,54386774,54503654,54562915	0.891566
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	114706813	114706839	114706827	-	RAMPAGE_only	3	3	15	0.345372	3.521641	chr1	114706649	114706866	SINE|tRNA-RTE|MamSINE1	-	chr1	114704463	114716894	NRAS|NM_002524.4	-	114704463,114708153,114708530,114709568,114713799,114716049,114716657	114708050,114708192,114708654,114709728,114713978,114716177,114716894	0.933333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	57267760	57267787	57267786	+	RAMPAGE_only	4	4	23	0.529571	3.827910	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.826087
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	79631254	79631329	79631302	+	High_confidence	326	327	1776	40.892086	6.588725	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.989865
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	31466375	31466376	31466375	-	High_confidence	5	5	8	0.184199	2.521641	chr5	31466363	31466531	DNA|TcMar-Mariner|MARNA	-	chr5	31449368	31466486	DROSHA|ENST00000507174.1	-	31449368,31451532,31464235,31466181	31449419,31451640,31464343,31466486	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	140655868	140655989	140655988	+	RAMPAGE_only	13	20	200	4.604965	5.226042	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.975000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	98891256	98891330	98891329	-	High_confidence	8	12	52	1.197291	5.054587	chr4	98891322	98891802	LINE|L1|L1MB2	+	chr4	98881009	98890898	EIF4E|ENST00000505194.5	-	98881009,98884921,98887078,98887888,98890786	98881142,98885061,98887192,98887952,98890898	0.865385
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	164822030	164822060	164822059	-	High_confidence	2	2	7	0.161174	2.584963	chr6	164818472	164822156	LINE|L1|L1MA2	+	chr6	164793376	164822063	MEAT6|NR_131926.1	-	164793376,164804955,164805695,164821937	164794152,164805090,164805729,164822063	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	85682855	85682891	85682862	-	RAMPAGE_only	50	65	145	3.338599	6.356060	chr11	85682520	85682971	DNA|hAT-Tip100|MER115	+	chr11	85657563	85665138	CREBZF|NR_028025.1	-	85657563,85663523,85663814	85662457,85663601,85665138	0.668966
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	92224230	92224259	92224230	+	RAMPAGE_only	18	20	65	1.496613	5.191024	chr11	92224275	92224450	SINE|MIR|MIRc	+	chr11	92352095	92896452	FAT3|ENST00000409404.6	+	92352095,92524633,92697383,92761855,92764878,92774040,92789942,92792766,92797835,92805152,92806361,92809842,92831621,92834869,92836565,92837662,92840561,92843933,92857213,92859164,92866740,92880730,92882737,92886999,92890490	92355404,92524948,92697445,92762170,92765089,92774180,92790218,92792977,92801909,92805349,92806515,92810076,92832011,92835084,92836703,92837806,92840759,92844732,92857348,92859322,92867209,92880884,92883393,92887113,92896452	0.507692
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	102450326	102450379	102450326	-	High_confidence	4	4	40	0.920993	4.821928	chr11	102450237	102450387	LTR|ERVL-MaLR|MLT1K	+	chr11	102402033	102449452	TMEM123|ENST00000531103.5	-	102402033,102448811,102449114	102402206,102448868,102449452	0.675000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	114705701	114705868	114705773	-	RAMPAGE_only	21	23	184	4.236567	4.448455	chr1	114705629	114705788	SINE|Alu|AluSx3	-	chr1	114704463	114716894	NRAS|NM_002524.4	-	114704463,114708153,114708530,114709568,114713799,114716049,114716657	114708050,114708192,114708654,114709728,114713978,114716177,114716894	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	95516103	95516120	95516119	+	High_confidence	3	3	8	0.184199	3.000000	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	196500508	196500569	196500528	-	RAMPAGE_only	5	5	32	0.736794	3.458566	chr3	196500000	196500645	LINE|L1|L1MB3	+	chr3	196471759	196503677	RNF168|ENST00000437070.1	-	196471759,196475230,196483769,196487398,196502872	196472772,196475312,196483891,196487578,196503677	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	54208557	54208558	54208557	+	High_confidence	16	17	17	0.391422	3.077820	chr20	54208550	54208675	SINE|MIR|MIR3	-	chr20	54208311	54219203	PFDN4|ENST00000487129.1	+	54208311,54208834,54214350,54215299,54219018	54208558,54208915,54214458,54215440,54219203	0.882353
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	22007382	22007398	22007397	+	High_confidence	6	6	19	0.437472	3.191612	chr16	22006872	22007647	LINE|L2|L2a	+	chr16	22008134	22084654	C16orf52|NM_001164579.1	+	22008134,22075486,22080695	22008407,22075699,22084654	0.894737
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	10973335	10973336	10973335	+	High_confidence	9	9	14	0.322348	3.700440	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.642857
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	93553814	93553864	93553814	-	RAMPAGE_only	3	3	20	0.460496	4.121928	chr5	93553755	93553876	LINE|RTE-BovB|MamRTE1	-	chr5	93409358	93570793	NR2F1-AS1|ENST00000607797.5	-	93409358,93553760,93554873,93563363,93569889	93411509,93553863,93554995,93563463,93570793	0.550000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	95770714	95770781	95770714	-	RAMPAGE_only	46	46	220	5.065461	4.594248	chr4	95770067	95771358	LINE|L1|L1MA3	+	chr4	95162503	95549210	UNC5C|NM_003728.3	-	95162503,95170153,95182896,95185046,95202730,95206627,95216123,95218968,95219984,95242428,95244976,95250486,95278258,95301605,95335409,95548733	95169399,95170332,95183061,95185196,95202964,95206796,95216211,95219313,95220176,95242593,95245144,95250667,95278362,95301749,95335631,95549210	0.836364
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	26045839	26045868	26045867	-	RAMPAGE_only	3	3	10	0.230248	2.721928	chr13	26045800	26046107	SINE|Alu|AluSx1	+	chr13	26044596	26051031	SHISA2|ENST00000319420.3	-	26044596,26050641	26047066,26051031	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	43307767	43307816	43307815	-	RAMPAGE_only	2	2	9	0.207223	3.169925	chr5	43307757	43307827	SINE|tRNA|LFSINE_Vert	+	chr5	43287469	43313224	HMGCS1|NM_001324219.1	-	43287469,43292473,43292847,43294055,43294690,43295751,43297001,43298008,43298517,43313021	43291220,43292637,43292973,43294162,43294861,43295917,43297166,43298134,43298975,43313224	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	50476942	50476960	50476942	+	High_confidence	4	4	9	0.207223	2.503258	chr19	50476976	50477106	SINE|Alu|AluJr	+	chr19	50476942	50479066	EMC10|ENST00000597799.1	+	50476942,50477928,50478956	50477221,50478001,50479066	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	99906521	99906566	99906521	-	High_confidence	7	7	54	1.243340	5.118216	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	39809803	39809865	39809858	-	High_confidence	37	62	241	5.548982	5.567875	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.751037
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	70590328	70590335	70590328	+	RAMPAGE_only	4	4	11	0.253273	3.027169	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.636364
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	60277563	60277571	60277563	-	RAMPAGE_only	17	32	50	1.151241	3.813917	chr3	60277246	60277886	LTR|ERV1|LTR9D	+	chr3	59747277	60081127	FHIT|NM_001320901.1	-	59747277,59922345,60011370,60014006,60014205,60070858,60080790	59752321,59922414,60011400,60014075,60014264,60070939,60081127	0.820000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	205093955	205093977	205093955	+	RAMPAGE_only	3	3	12	0.276298	3.459432	chr2	205093818	205094099	LINE|RTE-BovB|MamRTE1	-	chr2	205103691	205121688	PARD3B|ENST00000489565.1	+	205103691,205104425,205113490,205118920,205121590	205103769,205104514,205113577,205119046,205121688	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	36024503	36024522	36024510	-	High_confidence	3	3	15	0.345372	3.640224	chr6	36024359	36024470	LINE|L2|L2b	-	chr6	35943513	36024500	SLC26A8|NM_138718.2	-	35943513,35951162,35951444,35955151,35959459,35959713,35960842,35960992,35962525,35968876,35975374,35977203,35982120,35997737,35999991,36012232,36019519,36024329	35944340,35951347,35951499,35955520,35959591,35959806,35960912,35961099,35962621,35968954,35975488,35977351,35982203,35997919,36000108,36012372,36019709,36024500	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	44829070	44829072	44829070	-	RAMPAGE_only	10	18	23	0.529571	3.572624	chr7	44828696	44829092	LTR|ERVL-MaLR|MLT1D	-	chr7	44826790	44848077	H2AFV|ENST00000222690.10	-	44826790,44835528,44840898,44843276,44847968	44830163,44835658,44841012,44843354,44848077	0.956522
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	11821382	11821418	11821407	-	RAMPAGE_only	3	3	16	0.368397	3.452820	chr3	11821108	11821600	DNA|hAT-Charlie|MER1A	-	chr3	11790542	11817337	TAMM41|ENST00000414736.1	-	11790542,11807832,11809516,11810775,11817079	11790581,11807895,11809682,11810897,11817337	0.937500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	10551143	10551147	10551145	+	RAMPAGE_only	4	10	15	0.345372	3.039149	chr18	10550972	10551236	SINE|Alu|AluJb	-	chr18	10539123	10552761	NAPG|ENST00000583367.1	+	10539123,10539987,10540328,10546325,10548298,10548966,10550076	10539871,10540054,10540399,10546404,10548378,10549096,10552761	0.933333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	80147915	80147930	80147929	+	High_confidence	20	20	53	1.220316	5.358700	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80147923	80178432	PARD6G-AS1|NR_028340.1	+	80147923,80175879,80178085	80148254,80175935,80178432	0.528302
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	20658312	20658349	20658338	+	High_confidence	20	25	119	2.739954	5.325344	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658311	20865967	MSTRG.24507.4	+	20658311,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20820323,20820940,20822988,20862577,20865925	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20820425,20821071,20823115,20862712,20865967	0.689076
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	49371242	49371263	49371242	+	RAMPAGE_only	3	3	12	0.276298	3.584963	chr12	49371035	49371545	LINE|L1|L1MB3	-	chr12	49367517	49484663	SPATS2|ENST00000548777.5	+	49367517,49406472,49460769,49484589	49367587,49406565,49461037,49484663	0.583333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	152074293	152074298	152074293	+	High_confidence	6	7	18	0.414447	3.734522	chr7	152073014	152074601	LINE|L1|L1MA5A	-	chr7	152074297	152122160	GALNT11|ENST00000434507.5	+	152074297,152075009,152079286,152094189,152100797,152103111,152105244,152108037,152110527,152113245,152117156,152118677,152120830,152121545	152074403,152075180,152079408,152094522,152100921,152103278,152105370,152108287,152110645,152113398,152117375,152118782,152120968,152122160	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	17352281	17352314	17352281	+	High_confidence	19	20	74	1.703837	5.056884	chr11	17352168	17352474	SINE|Alu|AluY	-	chr11	17351725	17383531	MSTRG.3802.1	+	17351725,17356650,17367008,17368866,17372005	17352683,17357001,17367347,17368964,17383531	0.891892
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	74929831	74929906	74929865	-	RAMPAGE_only	17	17	104	2.394582	5.564112	chr11	74929615	74929915	LINE|L2|L2c	+	chr11	74906352	74949020	XRRA1|ENST00000525407.5	-	74906352,74907144,74921213,74927390,74930299,74933800,74936883,74940784,74948927	74906456,74907273,74921347,74927488,74930372,74933872,74937068,74940882,74949020	0.509615
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	32601284	32601288	32601284	+	RAMPAGE_only	4	5	8	0.184199	3.000000	chr12	32601190	32601318	SINE|MIR|MIRb	-	chr12	32582378	32644751	FGD4|ENST00000494977.1	+	32582378,32598496,32600409,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624658,32624975,32625653,32633548,32637649,32638654,32640275,32642760,32644593	32582467,32598586,32600509,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32624751,32625068,32625779,32633689,32637855,32638795,32640453,32642842,32644751	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	102125354	102125373	102125354	+	High_confidence	3	3	8	0.184199	2.807355	chrX	102125258	102125410	SINE|MIR|MIRb	+	chrX	102125687	102127712	TCEAL2|NM_080390.3	+	102125687,102126372,102126803	102125806,102126445,102127712	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	13615960	13615966	13615960	+	High_confidence	13	13	23	0.529571	3.975418	chr6	13615954	13616046	SINE|Alu|AluJb	+	chr6	13615588	13632739	NOL7|ENST00000474485.1	+	13615588,13615711,13616462,13617769,13618057,13620207,13620407,13620753,13632392	13615624,13615772,13616521,13617801,13618139,13620329,13620485,13620856,13632739	0.826087
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	22007559	22007583	22007578	+	High_confidence	6	6	15	0.345372	3.664498	chr16	22006872	22007647	LINE|L2|L2a	+	chr16	22008134	22084654	C16orf52|NM_001164579.1	+	22008134,22075486,22080695	22008407,22075699,22084654	0.866667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	34129783	34129805	34129804	-	RAMPAGE_only	4	5	16	0.368397	3.577820	chr20	34129672	34130246	LTR|ERVK|HERVK-int	+	chr20	34088297	34112356	EIF2S2|NM_001316363.1	-	34088297,34090516,34093674,34096656,34097415,34098497,34103461,34105367,34112095	34089905,34090602,34093731,34096805,34097516,34098624,34103565,34105545,34112356	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	103577211	103577212	103577211	+	High_confidence	6	9	9	0.207223	2.947703	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	8376199	8376200	8376199	+	RAMPAGE_only	28	28	41	0.944018	4.171474	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8370932	8379313	PTPRM|ENST00000583153.2	+	8370932,8371759,8376045,8376461,8378264,8379166	8371006,8371810,8376200,8376597,8378414,8379313	0.780488
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	61813817	61813834	61813833	+	RAMPAGE_only	2	3	12	0.276298	3.095795	chr4	61813790	61813894	SINE|tRNA|LFSINE_Vert	-	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	76173381	76173407	76173405	+	High_confidence	5	10	17	0.391422	3.969816	chrX	76173221	76173522	SINE|Alu|AluJb	-	chrX	76173039	76178196	PBDC1|ENST00000373357.3	+	76173039,76173584,76174889,76175472,76177615	76173168,76173650,76174949,76175613,76178196	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	138880196	138880197	138880196	-	RAMPAGE_only	42	42	42	0.967043	3.810832	chr5	138880161	138880436	SINE|Alu|AluJb	-	chr5	138869389	138875368	LRRTM2|NM_015564.2	-	138869389,138874907	138874556,138875368	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	13542985	13543497	13542985	-	RAMPAGE_only	18	22	319	7.344919	6.679668	chr12	13542496	13545457	LINE|L2|L2a	+	chr12	13537336	13980363	GRIN2B|ENST00000609686.3	-	13537336,13567024,13569829,13571803,13608602,13611724,13615113,13615492,13616454,13675744,13753316,13865797,13979927	13564639,13567263,13570017,13571964,13608832,13611850,13615267,13615664,13616657,13675859,13753915,13866226,13980363	0.996865
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	11047938	11047945	11047938	+	RAMPAGE_only	8	9	13	0.299323	3.022055	chr6	11047908	11048028	SINE|MIR|MIRc	-	chr6	11044692	11078226	ELOVL2-AS1|ENST00000456616.1	+	11044692,11047908,11077688	11044966,11047999,11078226	0.769231
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	50737306	50737313	50737306	+	RAMPAGE_only	2	2	7	0.161174	2.521641	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50740266	50744808	LUC7L3|ENST00000507503.1	+	50740266,50741101,50741656,50743705,50744651	50740345,50741246,50741731,50743810,50744808	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	6590246	6590310	6590292	+	High_confidence	12	12	111	2.555755	5.713178	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.585586
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	155478081	155478112	155478111	-	RAMPAGE_only	4	5	12	0.276298	2.918296	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	182928782	182928846	182928788	-	RAMPAGE_only	8	15	55	1.266365	5.003998	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.600000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	1879868	1879904	1879903	-	RAMPAGE_only	9	9	18	0.414447	3.690117	chr1	1879727	1879914	DNA|hAT-Charlie|Charlie1	-	chr1	1793244	1890401	GNB1|ENST00000434686.6	-	1793244,1804418,1806474,1815755,1817836,1825396,1839189,1839628,1890363	1793311,1804581,1806538,1815862,1817875,1825499,1839238,1839682,1890401	0.944444
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	77169365	77169388	77169387	-	RAMPAGE_only	2	2	7	0.161174	2.584963	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77088989	77219426	PIGK|ENST00000370812.7	-	77088989,77122274,77154448,77161294,77161593,77163845,77166718,77169259,77206639,77210435,77219309	77092490,77122359,77154621,77161405,77161711,77163942,77166830,77169395,77206731,77210489,77219426	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	49867874	49867909	49867884	-	High_confidence	11	11	47	1.082167	5.088779	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49861203	49867886	PNKP|ENST00000322344.7	-	49861203,49861448,49861607,49861771,49862043,49862184,49862370,49862537,49862689,49863688,49863963,49864178,49864323,49865126,49866398,49867053,49867468	49861365,49861510,49861695,49861881,49862105,49862281,49862463,49862608,49862738,49863760,49864071,49864236,49864403,49865426,49866445,49867217,49867886	0.829787
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	43013460	43013554	43013497	-	High_confidence	10	12	114	2.624830	5.919596	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.956140
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	9474000	9474035	9474000	+	High_confidence	4	4	11	0.253273	3.121928	chr2	9473951	9474065	DNA|TcMar-Tigger|MER2	+	chr2	9473817	9488444	IAH1|ENST00000482918.5	+	9473817,9475986,9478221,9481285,9484431,9488146	9473899,9476039,9478370,9481447,9484550,9488444	0.818182
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	52661555	52661558	52661557	+	RAMPAGE_only	32	43	49	1.128216	3.664961	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31121175	31121221	31121192	-	RAMPAGE_only	4	4	22	0.506546	3.499228	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.954545
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	124651955	124652019	124652001	-	RAMPAGE_only	5	7	30	0.690745	4.215061	chrX	124651906	124651980	LINE|CR1|L3	-	chrX	124375907	124869059	MSTRG.26075.2	-	124375907,124382669,124383633,124385676,124392051,124405030,124406316,124420310,124422271,124453336,124481731,124487208,124497015,124503559,124520516,124523363,124529863,124546873,124561670,124563748,124565374,124641790,124645142,124646708,124651913,124653583,124671682,124705012,124736956,124868940	124381294,124382812,124384854,124386064,124392348,124405266,124406489,124420821,124422638,124453491,124481964,124487229,124497265,124503703,124520784,124523625,124529983,124547090,124561817,124563772,124565560,124641991,124645337,124646810,124652124,124653783,124671835,124705251,124737197,124869059	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	18544030	18544084	18544035	-	High_confidence	6	6	24	0.552596	4.053509	chr19	18544020	18544075	SINE|MIR|MIR3	-	chr19	18538215	18544077	FKBP8|ENST00000597611.7	-	18538215,18539370,18539550,18541678,18543908	18538436,18539459,18539720,18541995,18544077	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	45593653	45593667	45593653	+	High_confidence	13	13	22	0.506546	3.984184	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	137345811	137345828	137345811	-	RAMPAGE_only	11	11	20	0.460496	3.921928	chr7	137345640	137346278	LTR|ERV1|MER41B	-	chr7	137227340	137344364	MSTRG.23139.1	-	137227340,137251229,137253463,137254858,137343438,137344257	137228075,137251391,137253637,137254974,137343699,137344364	0.700000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	168555306	168555531	168555418	-	RAMPAGE_only	51	57	365	8.404060	5.558544	chr5	168555251	168555542	SINE|Alu|AluSx	-	chr5	168548494	168579600	PANK3|ENST00000239231.6	-	168548494,168559031,168561392,168563888,168566012,168568645,168579255	168557621,168559157,168561516,168564065,168566266,168568998,168579600	0.997260
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	82881864	82881886	82881864	-	High_confidence	2	2	9	0.207223	2.750000	chr4	82881686	82881823	LINE|L2|L2c	-	chr4	82818671	82881937	SEC31A|ENST00000505472.5	-	82818671,82821036,82824554,82827368,82828999,82842139,82844385,82845200,82848803,82851430,82853569,82854902,82856951,82857688,82861630,82862533,82863317,82864361,82866807,82867154,82870324,82871943,82874610,82875726,82878729,82880798,82881857	82819253,82821108,82824674,82827632,82829058,82842481,82844509,82845293,82848977,82851604,82853715,82855029,82857130,82857764,82861708,82862572,82863392,82864598,82866960,82867316,82870424,82872086,82874751,82875822,82878928,82880922,82881937	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	80133953	80133964	80133963	+	High_confidence	8	8	14	0.322348	3.324863	chr7	80133950	80134060	SINE|MIR|MIR3	-	chr7	80133957	80218111	GNAI1|ENST00000649267.1	+	80133957,80135005,80188950,80189089,80199224,80203703,80210968,80212715,80217302	80134312,80135278,80188993,80189231,80199382,80203832,80211098,80212869,80218111	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	152412488	152412529	152412488	-	High_confidence	6	7	26	0.598645	4.180833	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	76386882	76387071	76386989	-	RAMPAGE_only	10	12	94	2.164333	4.770957	chr9	76386869	76387001	SINE|Alu|FLAM_C	-	chr9	76385545	76394132	RFK|ENST00000490113.1	-	76385545,76388182,76388553,76392417,76394089	76387529,76388286,76388656,76392569,76394132	0.989362
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	113773650	113773692	113773685	-	High_confidence	79	86	231	5.318734	6.379159	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113744576	113773683	LINC01234|NR_110026.1	-	113744576,113767074,113773614	113746595,113767208,113773683	0.658009
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	9973632	9973659	9973632	-	RAMPAGE_only	2	2	12	0.276298	3.277613	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	62883977	62884038	62884031	+	High_confidence	14	18	70	1.611738	4.984441	chr11	62883998	62884123	SINE|MIR|MIRb	+	chr11	62884454	62888169	SLC3A2|ENST00000535768.1	+	62884454,62884631,62885176,62888134	62884525,62884690,62885608,62888169	0.957143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	30096880	30096932	30096880	-	High_confidence	3	3	14	0.322348	3.182006	chr16	30096875	30097207	LTR|ERV1|LTR10B2	+	chr16	30092636	30096912	YPEL3|ENST00000566595.5	-	30092636,30094788,30095102,30095251,30096615	30092799,30094897,30095146,30095434,30096912	0.928571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	237891251	237891268	237891251	+	RAMPAGE_only	10	10	55	1.266365	4.874554	chr2	237891135	237891449	SINE|Alu|AluY	-	chr2	237859975	237912010	RAMP1|ENST00000403885.1	+	237859975,237877223,237911527	237860003,237877362,237912010	0.545455
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	145815164	145815165	145815164	+	High_confidence	8	8	12	0.276298	3.095795	chr6	145815053	145815170	SINE|MIR|MIR3	-	chr6	145815297	145883661	AL356599.1|ENST00000587540.1	+	145815297,145881578,145883204	145815431,145881648,145883661	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	78388842	78388898	78388875	+	RAMPAGE_only	5	6	38	0.874943	4.725481	chr5	78388798	78388903	LINE|CR1|L3	-	chr5	78360627	78416635	SCAMP1|ENST00000511551.2	+	78360627,78370619,78388836,78415519,78416540	78360728,78370805,78388914,78415618,78416635	0.631579
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	94093466	94093487	94093486	+	RAMPAGE_only	3	3	6	0.138149	2.584963	chr3	94093363	94093753	LTR|ERVL?|LTR87	-	chr3	94063010	94126786	NSUN3|NM_022072.3	+	94063010,94064436,94084106,94094139,94095032,94126210	94063138,94064546,94084450,94094294,94095154,94126786	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	86257586	86257587	86257586	+	RAMPAGE_only	4	5	7	0.161174	2.521641	chr11	86257623	86258034	LTR|ERV1|MER65A	+	chr11	86263944	86278554	EED|ENST00000534564.5	+	86263944,86268455,86276979,86277917,86278398	86266216,86268561,86277138,86277991,86278554	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	77877073	77877079	77877078	+	RAMPAGE_only	5	5	10	0.230248	2.947703	chr1	77877007	77877102	SINE|Alu|FRAM	-	chr1	77779774	77878378	MIGA1|ENST00000645526.1	+	77779774,77783242,77801330,77803269,77806974,77813733,77815107,77843306,77858937,77859313,77860039,77861223,77863893,77866337,77873003,77874845	77779967,77783351,77801508,77803406,77807101,77813867,77815231,77843407,77859056,77859386,77860126,77861322,77864028,77866391,77873120,77878378	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	176378601	176378606	176378601	+	RAMPAGE_only	2	2	6	0.138149	2.584963	chr5	176378457	176378644	LTR|ERV1|ERV24B_Prim-int	-	chr5	176365467	176381909	ARL10|ENST00000310389.5	+	176365467,176366379,176368806,176371721	176365746,176366581,176368982,176381909	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	11252937	11252940	11252937	+	High_confidence	2	2	7	0.161174	2.807355	chr7	11252764	11253207	LTR|ERVL|LTR40b	-	chr7	11252979	11520175	AC004160.1|ENST00000445839.5	+	11252979,11379286,11383796,11520051	11253225,11379369,11383908,11520175	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	169812810	169812811	169812810	-	High_confidence	5	5	8	0.184199	2.500000	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793427	169812786	LRRC34|NM_153353.4	-	169793427,169795484,169796213,169796744,169804052,169806847,169807425,169807587,169808627,169812409	169793838,169795611,169796369,169796899,169804181,169806931,169807490,169807709,169808745,169812786	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	35394352	35394353	35394352	-	High_confidence	8	8	12	0.276298	3.251629	chr20	35394267	35394643	LTR|ERVL|MER21C	+	chr20	35303452	35394203	UQCC1|ENST00000397556.7	-	35303452,35306665,35314687,35347163,35366556,35381925,35384037,35394091	35304069,35306779,35314765,35347272,35366614,35382025,35384133,35394203	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	73144752	73144771	73144752	-	RAMPAGE_only	18	20	58	1.335440	4.699926	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.948276
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	70257698	70257720	70257706	+	High_confidence	24	25	43	0.990067	4.773270	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.953488
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	29420727	29420759	29420733	+	RAMPAGE_only	2	2	10	0.230248	2.947703	chr10	29420738	29420847	LINE|L1|L1MA5	+	chr10	29409571	29422372	SVIL-AS1|ENST00000427063.6	+	29409571,29415356,29420490	29409658,29415412,29422372	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	148262918	148262929	148262928	+	High_confidence	4	4	8	0.184199	2.521641	chr7	148262800	148262969	LTR|ERV1|MER90	-	chr7	148263054	148420920	CNTNAP2|ENST00000636242.1	+	148263054,148267032,148383648,148409390,148415416	148263236,148267126,148383888,148409471,148420920	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	163423160	163423231	163423160	+	High_confidence	11	11	86	1.980135	5.747454	chr6	163423016	163423301	SINE|Alu|AluSx4	+	chr6	163423133	163563454	QKI|ENST00000537041.5	+	163423133,163455278,163478779,163534981,163561981,163563443	163423213,163455421,163478896,163535125,163562069,163563454	0.651163
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	97719108	97719169	97719168	+	RAMPAGE_only	5	5	27	0.621670	4.134336	chr8	97719213	97719522	SINE|Alu|AluSx1	+	chr8	97644545	97725243	MTDH|ENST00000519934.5	+	97644545,97661071,97686667,97687428,97689037,97690951,97706625,97713661,97719048,97722878,97724599	97644887,97661173,97686752,97687605,97689103,97691188,97706750,97713769,97719189,97723035,97725243	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	20423688	20423704	20423703	-	RAMPAGE_only	65	98	297	6.838372	5.373842	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20395954	20424921	MSTRG.12800.3	-	20395954,20408949,20424785	20399038,20409045,20424921	0.831650
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	33672406	33672476	33672460	+	RAMPAGE_only	23	47	92	2.118284	3.959802	chr11	33672154	33672567	LTR|ERVL-MaLR|MLT1M	-	chr11	33542330	33674102	KIAA1549L|NM_012194.2	+	33542330,33544766,33547763,33551039,33552107,33559748,33561675,33568075,33574701,33583337,33591236,33598819,33606640,33609748,33618532,33645685,33656011,33658749,33660862,33667872	33544336,33545378,33547879,33551259,33552241,33559911,33561735,33568227,33574873,33583501,33591421,33598947,33606822,33609966,33618662,33646036,33656109,33658898,33661014,33674102	0.989130
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	5726324	5726356	5726324	-	High_confidence	128	140	193	4.443791	5.212743	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.818653
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	125874634	125874643	125874634	-	High_confidence	5	5	16	0.368397	3.327820	chr11	125874041	125875038	LTR|ERV1|HUERS-P3-int	+	chr11	125873448	125874528	AP000842.3|ENST00000569238.1	-	125873448	125874528	0.562500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	70755054	70755096	70755054	+	High_confidence	4	4	16	0.368397	3.875000	chr16	70754960	70755144	SINE|MIR|MIR3	-	chr16	70755059	70773251	VAC14-AS1|NR_034083.2	+	70755059,70756012,70761152,70766442,70768845,70771607	70755249,70756087,70761258,70766556,70768943,70773251	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	23838616	23838651	23838643	-	High_confidence	9	9	26	0.598645	4.168296	chr1	23837780	23838651	LTR|ERV1|LTR1A2	+	chr1	23801886	23838620	HMGCL|ENST00000374487.6	-	23801886,23804399,23808134,23810735,23814189,23816674,23817475,23820509,23826083,23838063	23802564,23804525,23808323,23810799,23814338,23816770,23817583,23820593,23826183,23838620	0.884615
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	45616369	45616393	45616392	+	High_confidence	4	4	18	0.414447	3.725481	chr1	45616440	45616559	SINE|Alu|FLAM_C	+	chr1	45617236	45618246	NASP|ENST00000472408.1	+	45617236,45618060	45617591,45618246	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	212792343	212792473	212792472	-	High_confidence	23	31	158	3.637922	6.050125	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.841772
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	143039246	143039267	143039266	+	High_confidence	38	41	147	3.384649	5.179904	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.877551
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	168179571	168179584	168179583	+	High_confidence	4	4	9	0.207223	2.725481	chr1	168179548	168179695	LINE|L2|L2c	-	chr1	168178932	168202114	TIPRL|ENST00000367833.6	+	168178932,168183901,168184778,168191368,168196546,168198918,168199902	168179181,168184081,168184878,168191500,168196642,168198981,168202114	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	58306184	58306189	58306188	+	High_confidence	8	8	14	0.322348	2.931209	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	37157440	37157491	37157472	-	High_confidence	13	14	85	1.957110	5.598499	chr2	37157310	37157469	SINE|MIR|MIRb	-	chr2	37141634	37157065	EIF2AK2|ENST00000390013.3	-	37141634,37146852,37147687,37148856,37156907	37141701,37146973,37147822,37148939,37157065	0.729412
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	29317802	29317817	29317814	-	High_confidence	14	23	53	1.220316	5.397547	chr12	29317690	29317914	SINE|MIR|MIRb	-	chr12	29280414	29317848	LOC100506606|NR_103860.1	-	29280414,29282163,29292214,29293065,29307849,29309770,29317707	29281542,29282360,29292328,29293540,29308044,29309903,29317848	0.792453
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	4461946	4462002	4461960	-	High_confidence	29	29	111	2.555755	5.629674	chr4	4461848	4462205	LTR|ERVL|LTR79	+	chr4	4425160	4461954	STX18|ENST00000512195.5	-	4425160,4434769,4438393,4457190,4457422,4459371,4461905	4425222,4434858,4438509,4457257,4457500,4459487,4461954	0.882883
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	41359601	41359607	41359601	+	High_confidence	3	3	6	0.138149	2.584963	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	71423274	71423382	71423274	+	RAMPAGE_only	6	7	52	1.197291	5.392747	chr2	71423244	71423287	DNA|hAT-Ac|OldhAT1	+	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	4542561	4542562	4542561	-	High_confidence	6	6	9	0.207223	2.641604	chr4	4542511	4542647	SINE|MIR|MIRb	+	chr4	4425172	4542346	STX18|ENST00000507908.5	-	4425172,4434769,4438393,4457190,4457422,4459371,4471638,4542159	4425222,4434858,4438509,4457257,4457500,4459487,4471706,4542346	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	35746777	35746792	35746791	+	RAMPAGE_only	3	3	8	0.184199	2.500000	chr9	35746808	35746868	LINE|L2|L2c	+	chr9	35749279	35753267	RGP1|NM_001080496.2	+	35749279,35749736,35750242,35750657,35750839,35751265,35751626,35751955,35752650	35749408,35749871,35750379,35750741,35750989,35751412,35751754,35752145,35753267	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	17617790	17617829	17617796	-	High_confidence	16	25	80	1.841986	5.011078	chr10	17617759	17617913	SINE|Alu|FRAM	-	chr10	17589031	17617377	HACD1|ENST00000361271.7	-	17589031,17594204,17599289,17603559,17603725,17603929,17617082	17590446,17594383,17599411,17603648,17603744,17604047,17617377	0.787500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	30867156	30867157	30867156	-	RAMPAGE_only	6	8	8	0.184199	2.750000	chrX	30866257	30867266	LINE|L1|L1MC3	+	chrX	30834620	30871802	TAB3|ENST00000467136.5	-	30834620,30842965,30852777,30854115,30859486,30867114,30867464,30871698	30836835,30846644,30852938,30855562,30859678,30867218,30867549,30871802	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	194486612	194486626	194486612	-	High_confidence	2	2	8	0.184199	2.807355	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	169812897	169812904	169812903	-	High_confidence	6	6	13	0.299323	3.546594	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	25243986	25244110	25244104	-	High_confidence	8	8	44	1.013092	4.140361	chr1	25244059	25244116	SINE|Alu|Alu	-	chr1	25242248	25244105	RSRP1|ENST00000569495.5	-	25242248,25242538,25243549	25242426,25242705,25244105	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	103181328	103181329	103181328	-	RAMPAGE_only	84	85	86	1.980135	5.817738	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.593023
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	217363	217374	217363	+	High_confidence	24	24	38	0.874943	4.871178	chr3	217318	217820	LINE|L2|L2a	-	chr3	217534	328223	CHL1|ENST00000449294.6	+	217534,244612,319682,325958,328166	217700,244692,319867,326064,328223	0.736842
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	51464703	51464718	51464709	-	RAMPAGE_only	3	3	9	0.207223	2.500000	chr15	51464508	51464665	LINE|L1|L1M5	-	chr15	51456324	51459782	DMXL2|ENST00000558124.5	-	51456324,51457327,51458505,51458708,51459597	51456369,51457466,51458627,51458795,51459782	0.555556
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	43622938	43622980	43622938	-	High_confidence	2	2	9	0.207223	2.641604	chr3	43622864	43623165	SINE|Alu|AluSx	-	chr3	43365847	43622068	ANO10|ENST00000292246.7	-	43365847,43432610,43549719,43555277,43561219,43565652,43574808,43576691,43580352,43598531,43600383,43605713,43621908	43366974,43432727,43549848,43555469,43561402,43565727,43574864,43577261,43580472,43598666,43600581,43605863,43622068	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	51297907	51297947	51297907	-	High_confidence	5	5	32	0.736794	4.515320	chr1	51297625	51298239	LINE|L2|L2a	+	chr1	51287985	51297960	TTC39A|ENST00000534098.1	-	51287985,51288838,51290004,51290513,51294390,51297790	51288280,51288955,51290119,51290625,51294511,51297960	0.812500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	147382883	147382900	147382883	+	High_confidence	31	31	121	2.786004	5.085761	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.752066
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	197458401	197458405	197458401	+	High_confidence	13	13	20	0.460496	3.787144	chr3	197458272	197458415	DNA|hAT-Tip100|MER91A	+	chr3	197458404	197467105	AC128709.3|ENST00000420213.1	+	197458404,197466617	197458542,197467105	0.550000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	237085324	237085355	237085343	+	High_confidence	3	3	18	0.414447	3.852169	chr2	237085222	237085359	LINE|L2|L2	-	chr2	237085311	237100466	COPS8|ENST00000354371.6	+	237085311,237087126,237088604,237089861,237094089,237095821,237096821,237097662	237086042,237087197,237088653,237089994,237094197,237095884,237096869,237100466	0.944444
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	4581919	4581920	4581919	-	RAMPAGE_only	7	9	10	0.230248	2.503258	chr6	4581835	4581952	SINE|tRNA-RTE|MamSINE1	-	chr6	4304941	4583871	AL162718.1|ENST00000642310.1	-	4304941,4428382,4431395,4581638,4583723	4307968,4428951,4431475,4581803,4583871	0.600000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	24816714	24816738	24816737	-	RAMPAGE_only	6	11	35	0.805869	4.438334	chr12	24816689	24817035	DNA|hAT-Charlie|MER1B	-	chr12	24814802	24902296	BCAT1|ENST00000538118.5	-	24814802,24829822,24832722,24836510,24842081,24849785,24878529,24881300,24894274,24901813,24901962	24818049,24829897,24832863,24836596,24842224,24849949,24878649,24881411,24894475,24901885,24902296	0.942857
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	155869846	155869915	155869860	+	RAMPAGE_only	5	5	36	0.828894	4.440351	chr1	155869840	155870033	SINE|MIR|MIR	+	chr1	155859508	155885199	SYT11|ENST00000368324.4	+	155859508,155867964,155880499,155881197	155859795,155868791,155880623,155885199	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	56811343	56811457	56811424	-	High_confidence	12	18	96	2.210383	4.700831	chr19	56811359	56811474	LINE|L1|L1ME4c	-	chr19	56810090	56811283	PEG3|ENST00000599565.1	-	56810090,56811032	56810157,56811283	0.677083
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	30097080	30097094	30097080	+	High_confidence	3	3	7	0.161174	2.521641	chr16	30096875	30097207	LTR|ERV1|LTR10B2	+	chr16	30096429	30104116	AC012645.1|ENST00000515455.2	+	30096429,30103456	30097419,30104116	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	185620107	185620133	185620125	-	RAMPAGE_only	3	3	10	0.230248	2.725481	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	23685964	23686771	23685964	-	RAMPAGE_only	18	19	849	19.548075	5.094629	chr15	23685864	23686119	LINE|L1|L1M5	+	chr15	23685406	23687303	NDN|NM_002487.2	-	23685406	23687303	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	200857727	200857764	200857727	-	High_confidence	2	2	16	0.368397	3.875000	chr2	200857615	200857696	LINE|L1|L1MA8	-	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	23403931	23403988	23403987	-	RAMPAGE_only	5	6	32	0.736794	4.625000	chr1	23403928	23404035	LINE|RTE-BovB|MamRTE1	+	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	80120439	80120445	80120444	-	RAMPAGE_only	2	2	7	0.161174	2.584963	chr8	80120207	80120508	SINE|Alu|AluSz6	+	chr8	80064474	80158887	TPD52|ENST00000521561.1	-	80064474,80158436	80064593,80158887	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	116390246	116390392	116390289	+	RAMPAGE_only	9	10	85	1.957110	5.116683	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.976471
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	159382560	159382588	159382560	-	RAMPAGE_only	3	6	21	0.483521	4.106603	chr2	159382314	159382523	SINE|MIR|MIRb	-	chr2	159336959	159400650	MSTRG.14699.6	-	159336959,159337566,159347485,159348677,159349006,159349707,159373044,159374690,159382558,159383605,159385154,159386352,159389344,159395768,159397073,159397344,159398828,159400598	159337077,159337772,159347646,159348833,159349280,159350357,159373189,159374753,159382802,159383680,159385369,159386607,159389485,159395834,159397100,159397389,159398894,159400650	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	29077476	29077517	29077486	+	High_confidence	12	13	41	0.944018	5.046457	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077474	29091576	MAP3K7CL|ENST00000419845.5	+	29077474,29080551,29085812,29091500	29077713,29080708,29085917,29091576	0.512195
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	74485805	74485828	74485827	-	RAMPAGE_only	3	3	9	0.207223	3.169925	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	18063197	18063216	18063197	-	High_confidence	5	5	25	0.575621	3.827910	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.920000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	94093560	94093564	94093563	+	RAMPAGE_only	4	5	9	0.207223	3.000000	chr3	94093363	94093753	LTR|ERVL?|LTR87	-	chr3	94063010	94126786	NSUN3|NM_022072.3	+	94063010,94064436,94084106,94094139,94095032,94126210	94063138,94064546,94084450,94094294,94095154,94126786	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	34588450	34588453	34588452	-	High_confidence	20	41	46	1.059142	4.811499	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.913043
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	97188696	97188719	97188710	-	RAMPAGE_only	12	13	40	0.920993	4.436186	chr9	97188625	97188759	LTR|ERVL-MaLR|MLT1L	+	chr9	97156569	97221235	ANKRD18CP|ENST00000354752.5	-	97156569,97160181,97161754,97162564,97170606,97172947,97178263,97179996,97185441,97187453,97191730,97194702,97200458,97204860,97211372,97221029	97156585,97160402,97161966,97162846,97170736,97173060,97178413,97180916,97185515,97187507,97191798,97194840,97200565,97205034,97211487,97221235	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	25820171	25820216	25820215	+	High_confidence	18	19	122	2.809028	5.618198	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820231	25829658	MTFR1L|ENST00000464008.6	+	25820231,25823018,25823237,25823643,25826301,25826614,25829508	25820659,25823128,25823323,25823748,25826411,25826826,25829658	0.950820
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	148433257	148433279	148433257	+	RAMPAGE_only	2	2	10	0.230248	2.921928	chr1	148432841	148433382	LTR|ERV1|MER66C	-	chr1	148444944	148448219	MSTRG.1569.1	+	148444944	148448219	0.700000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	217842161	217842182	217842181	-	High_confidence	4	6	12	0.276298	2.913977	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	113246364	113246370	113246369	+	High_confidence	4	6	14	0.322348	3.235926	chr11	113246334	113246435	SINE|5S-Deu-L2|AmnSINE1	+	chr11	113246107	113260317	NCAM1|ENST00000534516.2	+	113246107,113255876,113260145	113246370,113256001,113260317	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	132272641	132272672	132272642	-	RAMPAGE_only	3	5	14	0.322348	3.180833	chr10	132272416	132273145	LINE|L2|L2a	+	chr10	132207481	132249108	STK32C|NR_134911.1	-	132207481,132209033,132209294,132222640,132222860,132224406,132225232,132225526,132225746,132226794,132227976,132245899,132249029	132208151,132209101,132209364,132222772,132222986,132224523,132225336,132225616,132225784,132226968,132228128,132245955,132249108	0.642857
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	84061956	84061972	84061971	+	RAMPAGE_only	3	3	8	0.184199	2.807355	chr6	84061901	84062061	LINE|L2|L2	-	chr6	84033755	84090881	MRAP2|ENST00000257776.4	+	84033755,84055311,84062892,84089090	84033883,84055445,84062992,84090881	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	46760154	46760184	46760181	+	High_confidence	7	7	28	0.644695	3.852498	chr18	46759742	46760334	LTR|ERVL-MaLR|MLT1E3	+	chr18	46759723	46764408	AC090241.2|ENST00000624895.1	+	46759723	46764408	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	86703067	86703119	86703112	+	RAMPAGE_only	14	14	48	1.105192	4.813722	chr1	86702882	86703173	SINE|Alu|AluSz	+	chr1	86704569	86748184	SH3GLB1|NM_001206652.1	+	86704569,86715723,86719506,86722539,86724312,86728402,86730087,86734601,86735078,86742207,86743127	86704971,86715865,86719635,86722673,86724405,86728441,86730111,86734691,86735179,86742436,86748184	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	98733184	98733220	98733203	+	High_confidence	3	3	11	0.253273	2.921928	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.818182
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	21324720	21324736	21324720	-	High_confidence	3	3	13	0.299323	3.700440	chr12	21323599	21325951	LTR|ERV1|MER4B-int	-	chr12	21274902	21324736	SLCO1A2|ENST00000463718.5	-	21274902,21292163,21293944,21295596,21297403,21300347,21301170,21304426,21306881,21314548,21318781,21319371,21324593	21275424,21292336,21294110,21295792,21297568,21300569,21301269,21304573,21306988,21314681,21318923,21319579,21324736	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	80059915	80059926	80059918	+	High_confidence	152	183	361	8.311961	5.594012	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.972299
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	21700775	21700799	21700775	-	RAMPAGE_only	8	8	13	0.299323	3.392747	chr22	21700475	21700774	SINE|Alu|AluSq10	-	chr22	21697535	21735834	YPEL1|NR_130910.1	-	21697535,21703369,21703838,21710486,21735614	21701218,21703478,21704125,21710908,21735834	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	236691	236724	236723	-	High_confidence	5	6	27	0.621670	3.107601	chr11	236640	236796	SINE|MIR|MIRb	-	chr11	216610	236834	SIRT3|ENST00000529382.5	-	216610,218831,224077,230451,232982,233342,236615	216718,219041,224239,230552,233215,233534,236834	0.851852
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	100268205	100268281	100268280	+	RAMPAGE_only	55	58	149	3.430699	4.188499	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266288	100292769	MSTRG.1215.5	+	100266288,100266523,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100292769	0.993289
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	193656716	193656717	193656716	+	RAMPAGE_only	8	8	8	0.184199	3.000000	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193648765	193659514	OPA1|ENST00000482865.1	+	193648765,193654861,193657079,193658886,193659481	193648871,193655027,193657232,193658995,193659514	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	39297777	39297813	39297797	-	RAMPAGE_only	4	4	20	0.460496	4.321928	chr21	39297418	39297842	LINE|RTE-BovB|MamRTE1	+	chr21	39296436	39313642	BRWD1|ENST00000341322.4	-	39296436,39312840,39313071,39313240,39313442	39298582,39312900,39313101,39313299,39313642	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	11135048	11135217	11135216	+	RAMPAGE_only	10	11	126	2.901128	5.594245	chr6	11134901	11135549	DNA|TcMar-Tc2|Kanga1	+	chr6	11094230	11135811	SMIM13|ENST00000376935.4	+	11094230,11134402,11135304	11094389,11134987,11135811	0.873016
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	1536820	1536838	1536837	-	RAMPAGE_only	3	3	7	0.161174	2.521641	chr1	1536825	1536969	LINE|L2|L2	+	chr1	1535173	1540357	TMEM240|ENST00000378733.8	-	1535173,1535588,1539683,1540289	1535507,1535797,1539790,1540357	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	30548904	30548917	30548904	-	RAMPAGE_only	7	7	12	0.276298	3.251629	chr7	30548762	30548906	LTR|Gypsy?|LTR88b	-	chr7	30497076	30550761	AC005154.5|ENST00000598361.4	-	30497076,30498802,30500535,30524366,30550635	30497235,30498938,30500681,30524486,30550761	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	96387545	96387562	96387561	-	High_confidence	10	10	16	0.368397	3.773557	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	0.812500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	137268452	137268453	137268452	-	High_confidence	57	59	64	1.473589	4.602480	chr7	137268351	137268846	LTR|ERV1|LTR2B	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.937500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	80344732	80344733	80344732	+	High_confidence	25	26	28	0.644695	4.356558	chr10	80344537	80344891	LTR|ERVL-MaLR|THE1A	+	chr10	80344744	80368073	DYDC2|NR_070308.1	+	80344744,80352436,80356259,80362434,80362950,80366687	80344815,80352617,80356596,80362590,80363073,80368073	0.892857
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	100126723	100126769	100126723	+	High_confidence	13	14	34	0.782844	4.438334	chr7	100126512	100126811	SINE|Alu|AluJr	+	chr7	100126784	100127736	MBLAC1|ENST00000421390.1	+	100126784,100127367	100127133,100127736	0.735294
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	67387491	67387512	67387511	-	RAMPAGE_only	5	5	10	0.230248	2.721928	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100831428	100831503	100831428	+	RAMPAGE_only	6	6	46	1.059142	4.675311	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100833277	100847301	MEG3|ENST00000455531.1	+	100833277,100845457	100836300,100847301	0.739130
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	100278829	100278841	100278829	-	RAMPAGE_only	3	5	10	0.230248	2.725481	chr2	100278629	100279252	LTR|ERVL|HERVL74-int	+	chr2	100273290	100322733	LONRF2|ENST00000393437.7	-	100273290,100286913,100290257,100294228,100295431,100298835,100299225,100299716,100300643,100302920,100309106,100321414	100284492,100287063,100290420,100294387,100295553,100298950,100299319,100299918,100300787,100303043,100309225,100322733	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	114284224	114284242	114284241	+	RAMPAGE_only	4	4	10	0.230248	2.947703	chr13	114284081	114284352	SINE|Alu|AluSg	+	chr13	114285974	114291718	UPF3A|ENST00000481131.5	+	114285974,114286518,114291488,114291633	114286400,114286629,114291544,114291718	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	6208711	6208717	6208715	-	High_confidence	2	3	7	0.161174	2.584963	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	150777444	150777450	150777449	-	RAMPAGE_only	6	6	13	0.299323	3.238901	chrX	150776742	150777409	LTR|ERV1|MER4A	-	chrX	150768976	150814864	CD99L2|ENST00000634795.1	-	150768976,150770303,150771804,150776173,150777443,150793690,150795205,150795417,150814861	150769101,150770369,150771822,150776293,150777482,150793756,150795289,150795486,150814864	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	17617863	17617888	17617887	-	High_confidence	2	2	7	0.161174	2.807355	chr10	17617759	17617913	SINE|Alu|FRAM	-	chr10	17589031	17617377	HACD1|ENST00000361271.7	-	17589031,17594204,17599289,17603559,17603725,17603929,17617082	17590446,17594383,17599411,17603648,17603744,17604047,17617377	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	74000298	74000300	74000299	+	RAMPAGE_only	3	5	8	0.184199	3.000000	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	56272340	56272372	56272340	+	High_confidence	16	16	28	0.644695	4.423252	chr4	56272344	56272407	LINE|CR1|L3	+	chr4	56272403	56328092	KIAA1211|ENST00000541073.5	+	56272403,56298213,56301225,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56272492,56298349,56301247,56307699,56310734,56313379,56316689,56323567,56324266,56328092	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	145735988	145736034	145736033	-	High_confidence	5	5	23	0.529571	4.142915	chr6	145735975	145736071	SINE|MIR|MIR3	+	chr6	145625303	145735855	EPM2A|NM_005670.3	-	145625303,145635244,145686121,145735197	145627693,145635486,145686296,145735855	0.608696
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	11507464	11507486	11507485	-	High_confidence	2	2	8	0.184199	2.807355	chr19	11507282	11507445	SINE|Alu|FRAM	-	chr19	11506074	11507709	ECSIT|ENST00000585898.1	-	11506074,11507456	11506428,11507709	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	93183426	93183518	93183517	-	RAMPAGE_only	6	11	44	1.013092	4.603760	chr14	93183223	93184271	LTR|Gypsy|MamGyp-int	-	chr14	93182195	93184904	MOAP1|NM_022151.4	-	93182195,93184558,93184809	93184362,93184713,93184904	0.954545
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	53576899	53576986	53576985	-	RAMPAGE_only	3	3	18	0.414447	3.530493	chrX	53576946	53576998	LTR|ERV1|LTR43-int	+	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	169813007	169813015	169813007	-	High_confidence	4	4	8	0.184199	2.750000	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812986	LRRC34|ENST00000522526.6	-	169793472,169795484,169796213,169796744,169804052,169806847,169807425,169807587,169808627,169812409	169793838,169795611,169796369,169796899,169804181,169806931,169807490,169807709,169808745,169812986	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	19487900	19487901	19487900	-	High_confidence	7	7	9	0.207223	2.750000	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	99471721	99471766	99471765	-	RAMPAGE_only	6	6	20	0.460496	3.684184	chr7	99471609	99471877	SINE|Alu|AluSx1	+	chr7	99458194	99466331	ATP5MF|ENST00000292475.7	-	99458194,99459146,99460085,99466110	99458355,99459263,99460193,99466331	0.700000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	130693385	130693444	130693397	+	High_confidence	9	9	40	0.920993	4.599379	chr2	130693150	130693434	SINE|Alu|AluY	+	chr2	130693281	130696388	FAR2P3|ENST00000434289.1	+	130693281,130696341	130693796,130696388	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	55918042	55918056	55918042	+	RAMPAGE_only	2	3	6	0.138149	2.584963	chr7	55917950	55918451	LTR|ERVL-MaLR|MLT1G1	+	chr7	55887536	55942530	ZNF713|ENST00000411863.2	+	55887536,55906252,55911615,55912634,55918041,55923161,55923606,55938981,55941391	55887680,55906379,55912068,55912723,55918297,55923288,55923699,55940173,55942530	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	81154243	81154274	81154273	-	High_confidence	4	4	16	0.368397	3.323231	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	47838447	47838475	47838447	-	RAMPAGE_only	3	4	15	0.345372	3.589898	chr18	47838388	47838511	LINE|L2|L2b	+	chr18	47808956	47930559	SMAD2|ENST00000262160.10	-	47808956,47845339,47845662,47848474,47851273,47865058,47868322,47869242,47870474,47896520,47930360	47841950,47845484,47845800,47848687,47851327,47865133,47868457,47869436,47870564,47896809,47930559	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	122064308	122064333	122064332	+	RAMPAGE_only	13	13	37	0.851918	4.447703	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.513514
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	165683595	165683662	165683661	+	RAMPAGE_only	4	4	35	0.805869	4.207738	chr2	165683635	165683720	LINE|L2|L2b	-	chr2	165572338	165689407	CSRNP3|ENST00000342316.8	+	165572338,165595042,165657760,165676311,165678700	165572587,165595213,165658020,165676608,165689407	0.942857
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	51691181	51691230	51691201	+	RAMPAGE_only	7	7	30	0.690745	4.640224	chr15	51690842	51691675	LINE|L2|L2c	-	chr15	51681491	51720071	SCG3|ENST00000542355.6	+	51681491,51683078,51683218,51688259,51689218,51692158,51695874,51699318,51701106,51713332,51719407	51681837,51683124,51683434,51688402,51689368,51692336,51695991,51699402,51701244,51713413,51720071	0.966667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	96638058	96638060	96638058	-	High_confidence	2	4	7	0.161174	2.521641	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593154	96638060	KANSL3|NR_047658.1	-	96593154,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638060	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	81057964	81057990	81057964	-	RAMPAGE_only	2	2	12	0.276298	2.918296	chr16	81057749	81058030	SINE|Alu|AluSc8	+	chr16	81053496	81077213	C16orf46|ENST00000378611.8	-	81053496,81061205,81063745,81077135	81054094,81062138,81063993,81077213	0.583333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	217756560	217756609	217756560	-	High_confidence	7	8	44	1.013092	4.074969	chr2	217756466	217756533	SINE|MIR|MIR3	-	chr2	217284022	217756593	DIRC3|NR_026597.1	-	217284022,217317965,217318919,217325845,217327996,217425301,217426590,217427390,217432922,217433947,217478380,217599611,217756467	217284863,217318201,217319177,217325970,217328152,217425522,217426786,217427473,217433021,217434116,217478558,217600829,217756593	0.704545
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	12681090	12681102	12681090	-	High_confidence	3	4	6	0.138149	2.584963	chr19	12680833	12681131	SINE|Alu|AluSx3	-	chr19	12675742	12681206	DHPS|ENST00000594424.5	-	12675742,12676016,12677107,12677290,12679456,12679622,12679800,12680160,12681032	12675933,12676142,12677211,12677396,12679543,12679719,12679922,12680325,12681206	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	77278758	77278789	77278758	-	RAMPAGE_only	3	4	12	0.276298	3.027169	chr13	77278539	77278721	LINE|L1|L1MA7	-	chr13	77270030	77273511	MYCBP2|ENST00000474882.2	-	77270030,77270295,77272322,77273471	77270063,77270538,77272399,77273511	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	27028264	27028269	27028268	-	RAMPAGE_only	2	2	7	0.161174	2.584963	chr5	27028096	27028392	SINE|Alu|AluSz	+	chr5	26880599	27038582	CDH9|NM_016279.3	-	26880599,26885613,26885965,26889835,26890427,26902475,26903636,26905958,26906718,26915629,26988105,27038462	26881623,26885865,26886083,26889957,26890564,26902729,26903824,26906126,26906838,26915924,26988382,27038582	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	4129072	4129117	4129116	+	RAMPAGE_only	3	3	18	0.414447	3.969816	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.944444
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	53523953	53523977	53523963	-	High_confidence	5	5	20	0.460496	3.932138	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.950000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	34649472	34649499	34649478	+	High_confidence	2	2	8	0.184199	2.521641	chr9	34649448	34649570	LINE|RTE-BovB|MamRTE1	-	chr9	34648921	34650583	GALT|ENST00000488412.2	+	34648921,34650368	34649564,34650583	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	26505793	26505827	26505793	-	RAMPAGE_only	3	3	15	0.345372	3.378783	chr8	26505710	26505993	SINE|Alu|AluSx1	+	chr8	26504679	26513967	PNMA2|NM_007257.5	-	26504679,26509547,26513815	26509243,26509677,26513967	0.933333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	24995212	24995298	24995212	+	RAMPAGE_only	18	18	77	1.772911	4.693935	chr15	24995035	24995326	SINE|Alu|AluSx4	+	chr15	24981993	25000276	MSTRG.7932.21	+	24981993,24998969,25000244	24998486,24999078,25000276	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	52236308	52236363	52236325	-	RAMPAGE_only	14	15	59	1.358465	4.864131	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.677966
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	38789810	38789859	38789812	-	RAMPAGE_only	12	16	42	0.967043	4.814511	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	0.976190
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	54807566	54807594	54807582	+	High_confidence	14	17	42	0.967043	4.930484	chrX	54807588	54807638	SINE|MIR|MIRb	+	chrX	54807598	54815694	MAGED2|ENST00000375053.6	+	54807598,54809302,54809721,54810820,54811249,54811573,54812156,54812944,54813117,54813487,54814660,54815247	54807802,54809376,54810213,54811129,54811313,54811653,54812251,54813024,54813160,54813550,54814775,54815694	0.928571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	170267210	170267260	170267210	-	High_confidence	17	19	106	2.440631	5.427186	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.962264
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	167877387	167877402	167877401	+	RAMPAGE_only	6	6	10	0.230248	3.321928	chr3	167877292	167877615	LINE|L2|L2c	-	chr3	167864855	167920746	LRRC77P|ENST00000636485.1	+	167864855,167877672,167878919,167880320,167883187,167888859,167893553,167895935,167903305,167905862,167912785,167914826,167915060,167917347,167920564	167864919,167877723,167878965,167880395,167883252,167888934,167893719,167896084,167903450,167905952,167912904,167914970,167915155,167917468,167920746	0.600000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	49086519	49086547	49086520	+	High_confidence	5	7	20	0.460496	3.921928	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.600000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	6866488	6866553	6866552	-	High_confidence	38	40	181	4.167493	6.038667	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.906077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	25261301	25261321	25261301	+	RAMPAGE_only	4	4	14	0.322348	3.521641	chr15	25255613	25261749	LINE|L1|L1PA5	+	chr15	25255578	25419445	MSTRG.7932.72	+	25255578,25266430,25266911,25268328,25269604,25271417,25277366,25278846,25418787	25261549,25266614,25267044,25268453,25269733,25271534,25277409,25278884,25419445	0.928571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	50653833	50653834	50653833	+	RAMPAGE_only	6	6	8	0.184199	2.750000	chr19	50653744	50654153	LTR|ERV1|MER90a	-	chr19	50649787	50659095	C19orf81|ENST00000458538.1	+	50649787,50656049,50656225,50657988,50658946	50649797,50656122,50656346,50658128,50659095	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	21567524	21567545	21567544	+	High_confidence	5	5	12	0.276298	2.845351	chr22	21567525	21567629	LINE|L2|L2b	+	chr22	21567546	21624034	UBE2L3|NM_001256356.1	+	21567546,21610856,21621514	21567771,21611043,21624034	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	95869922	95869944	95869936	+	RAMPAGE_only	4	5	15	0.345372	3.323231	chr7	95869931	95869979	LINE|L2|L2	-	chr7	95837617	96028321	DYNC1I1|ENST00000519371.1	+	95837617,95869882,95977511,95984814,95987055,95995947,96028174	95837649,95869998,95977601,95984977,95987155,95996073,96028321	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	107441579	107441593	107441579	-	RAMPAGE_only	3	3	9	0.207223	2.750000	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	67387433	67387463	67387433	-	RAMPAGE_only	3	3	17	0.391422	2.780639	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.764706
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50541367	50541373	50541367	+	RAMPAGE_only	3	3	8	0.184199	2.750000	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	66502611	66502693	66502611	-	High_confidence	36	37	482	11.097965	6.499809	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.960581
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	8994342	8994360	8994358	-	RAMPAGE_only	4	5	12	0.276298	3.277613	chr3	8994234	8994318	DNA|hAT-Charlie|MER117	-	chr3	8980593	9249213	SRGAP3|ENST00000360413.7	-	8980593,8990511,8992905,8994342,9010307,9013307,9013736,9015596,9025260,9026934,9028099,9038062,9047390,9053026,9056232,9058250,9060230,9064395,9080024,9104679,9124724,9248884	8985932,8990839,8993055,8994523,9010387,9013535,9013842,9015731,9025338,9026995,9028130,9038090,9047475,9053224,9056334,9058472,9060359,9064581,9080087,9104842,9124917,9249213	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	77088087	77088106	77088097	+	High_confidence	4	4	10	0.230248	3.169925	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	55906250	55906272	55906259	+	High_confidence	4	4	11	0.253273	3.321928	chr7	55906118	55906259	LTR|ERV1|LTR23	+	chr7	55906119	55942225	MSTRG.22454.5	+	55906119,55911615,55912666,55923161,55923606,55938981	55906379,55912068,55912723,55923288,55923699,55942225	0.636364
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	195688579	195688603	195688586	+	High_confidence	3	4	11	0.253273	3.459432	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688520	195708807	MUC20-OT1|ENST00000630417.2	+	195688520,195689338,195699029,195708133,195708746	195688797,195689438,195699207,195708435,195708807	0.636364
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	40084089	40084109	40084095	+	RAMPAGE_only	4	4	20	0.460496	3.826875	chr22	40082185	40084512	LINE|L2|L2a	-	chr22	40045473	40323360	TNRC6B|ENST00000402203.5	+	40045473,40117054,40125771,40156114,40246014,40251178,40261831,40270121,40273424,40277076,40277998,40279994,40285644,40300454,40300909,40301149,40308511,40310816,40312504,40312901,40315282,40315941,40321089,40322853	40045588,40117128,40125862,40156182,40246102,40251200,40262173,40270280,40273600,40277151,40278044,40280143,40285770,40300586,40301005,40301333,40308649,40310993,40312651,40312997,40315507,40316012,40321229,40323360	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	130723773	130723833	130723773	-	High_confidence	21	21	72	1.657787	4.211681	chr3	130723716	130724035	LINE|L1|HAL1	+	chr3	130708321	130723815	PIK3R4|ENST00000508273.5	-	130708321,130716395,130718388,130723413,130723693	130708492,130716599,130718534,130723587,130723815	0.861111
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	143852475	143852625	143852590	-	RAMPAGE_only	13	13	108	2.486681	5.809426	chr7	143852406	143853075	LINE|L1|L1M6B	-	chr7	143851367	143885373	TCAF1|NM_001206941.1	-	143851367,143857099,143858823,143860207,143861094,143862415,143862801,143885209	143854142,143857350,143859161,143860447,143861308,143862513,143863796,143885373	0.953704
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	58313413	58313441	58313413	-	RAMPAGE_only	7	7	14	0.322348	3.467720	chr13	58313337	58313624	LTR|ERVL-MaLR|MLT1F1	-	chr13	58211696	58233117	LINC00374|ENST00000454780.2	-	58211696,58215625,58221136,58221865,58227556,58229137,58232834	58211827,58215683,58221268,58221928,58227616,58229210,58233117	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	8448648	8448666	8448665	+	High_confidence	2	2	7	0.161174	2.584963	chr17	8448710	8448938	DNA|TcMar-Tigger|MER8	+	chr17	8448603	8461384	NDEL1|ENST00000582277.5	+	8448603,8450779,8454795,8460008,8461136	8448686,8450953,8454887,8460160,8461384	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	80301327	80301328	80301327	+	RAMPAGE_only	52	53	53	1.220316	4.906981	chr4	80301302	80301442	DNA|TcMar-Tigger|Tigger9b	+	chr4	80335719	80963756	C4orf22|NM_001206997.1	+	80335719,80362753,80583092,80608332,80869992,80944809,80963516	80335879,80362884,80583183,80608383,80870135,80944939,80963756	0.849057
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	174826430	174826449	174826430	-	RAMPAGE_only	5	5	17	0.391422	2.984234	chr4	174825942	174826600	LINE|L1|L1ME3A	+	chr4	174642486	174829227	GLRA3|ENST00000340217.5	-	174642486,174659053,174677077,174682801,174715487,174728474,174766962,174788815,174828740	174644064,174659197,174677292,174682939,174715570,174728698,174767030,174788943,174829227	0.941176
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50783214	50783234	50783214	+	High_confidence	10	10	26	0.598645	4.133661	chr22	50783102	50783247	SINE|Alu|AluJr	-	chr22	50783253	50799305	RPL23AP82|ENST00000467796.5	+	50783253,50785172,50798654	50783294,50785293,50799305	0.961538
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	48662907	48662935	48662934	+	RAMPAGE_only	16	16	37	0.851918	4.262979	chr18	48662701	48663071	LINE|L1|L1ME3A	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	0.864865
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	84019372	84019398	84019391	+	High_confidence	24	33	69	1.588713	5.369111	chr6	84018885	84019444	LTR|ERVL|LTR80B	-	chr6	84019203	84026100	AL161621.1|ENST00000444796.2	+	84019203,84020883,84023026,84024269	84019482,84020989,84023110,84026100	0.521739
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	199209	199314	199313	+	RAMPAGE_only	5	7	50	1.151241	4.901468	chr18	199329	199945	DNA|TcMar-Tigger|Tigger17a	+	chr18	196538	211268	USP14|ENST00000578786.1	+	196538,197615,198046,199201,202879,203097,204563,209970,210385,211132	196767,197696,198132,199316,202945,203190,204692,210031,210493,211268	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	86453184	86453214	86453184	-	High_confidence	3	3	25	0.575621	3.639080	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016014	86453185	MAPK10|ENST00000641634.1	-	86016014,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194318,86354529,86429677,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86429805,86453185	0.840000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	91325915	91325921	91325915	-	RAMPAGE_only	3	3	8	0.184199	2.521641	chr14	91325567	91325865	SINE|Alu|AluJb	-	chr14	91313942	91315870	CCDC88C|ENST00000557507.1	-	91313942,91315649	91314150,91315870	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	201171625	201171652	201171633	-	High_confidence	8	11	23	0.529571	4.186704	chr1	201171602	201171730	SINE|MIR|MIRc	+	chr1	201134770	201171582	TMEM9|NM_001288564.1	-	201134770,201143819,201146739,201151760,201153857,201171489	201135815,201143951,201146848,201151852,201153959,201171582	0.956522
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	104418837	104418973	104418880	-	High_confidence	57	57	275	6.331826	6.854276	chr8	104418737	104418980	LINE|L2|L2c	+	chr8	104380512	104418854	DPYS|ENST00000520483.5	-	104380512,104392783,104418715	104381314,104392991,104418854	0.654545
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	89944251	89944252	89944251	-	RAMPAGE_only	56	66	75	1.726862	5.638623	chr14	89944085	89944442	LTR|ERVL-MaLR|THE1B	-	chr14	89797156	89952605	EFCAB11|ENST00000553871.5	-	89797156,89931540,89932525,89950096,89952388	89797324,89931631,89932627,89950142,89952605	0.626667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100907731	100907732	100907731	-	RAMPAGE_only	13	13	14	0.322348	3.026987	chr14	100907475	100907696	SINE|MIR|MIRb	-	chr14	100879752	100903722	RTL1|ENST00000649591.1	-	100879752,100893443,100903290,100903604	100884874,100893505,100903386,100903722	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	111387764	111387835	111387823	-	RAMPAGE_only	13	13	41	0.944018	4.668980	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111343949	111482607	MSTRG.21653.9	-	111343949,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111472012,111474245	111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111472140,111482607	0.780488
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	166850105	166850125	166850123	+	RAMPAGE_only	25	41	62	1.427539	5.011726	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.951613
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31120671	31120725	31120671	-	RAMPAGE_only	9	9	48	1.105192	3.764398	chr12	31120538	31120678	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.958333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	36513728	36513735	36513734	+	High_confidence	4	6	8	0.184199	2.750000	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	142658602	142658604	142658603	-	RAMPAGE_only	6	11	17	0.391422	3.454822	chr8	142658517	142658741	LTR|ERVL-MaLR|MLT1A	-	chr8	142657459	142666520	JRK|ENST00000614134.1	-	142657459,142666456	142666327,142666520	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50783136	50783175	50783148	+	High_confidence	7	7	30	0.690745	4.456565	chr22	50783102	50783247	SINE|Alu|AluJr	-	chr22	50783253	50799305	RPL23AP82|ENST00000467796.5	+	50783253,50785172,50798654	50783294,50785293,50799305	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	44907249	44907421	44907249	+	RAMPAGE_only	14	14	181	4.167493	5.817061	chr20	44907296	44907477	SINE|Alu|FAM	+	chr20	44885710	44908532	YWHAB|ENST00000372839.7	+	44885710,44887647,44901530,44903992,44904967,44906000,44906381	44885886,44887742,44901833,44904116,44905131,44906096,44908532	0.988950
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	114625033	114625034	114625033	-	High_confidence	6	7	9	0.207223	2.750000	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	100102067	100102109	100102108	+	High_confidence	15	15	40	0.920993	4.038500	chr7	100102098	100102390	SINE|Alu|AluSx1	+	chr7	100102085	100103296	AP4M1|ENST00000495154.1	+	100102085,100102674,100102863,100103227	100102393,100102781,100102960,100103296	0.925000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	53464793	53464850	53464815	+	RAMPAGE_only	4	4	20	0.460496	4.021928	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.850000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	191425522	191425527	191425526	+	High_confidence	7	17	22	0.506546	3.984184	chr3	191425335	191425687	LTR|ERVL-MaLR|THE1B	+	chr3	191425526	191591097	AC073365.1|ENST00000642133.1	+	191425526,191530815,191531649,191539293,191546050,191557261,191559677,191569599,191573313,191589902	191425604,191530850,191531707,191539529,191546115,191557384,191559754,191569824,191573474,191591097	0.772727
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	138593997	138594035	138594034	-	High_confidence	7	7	23	0.529571	3.663533	chr3	138593850	138594045	SINE|MIR|MIRb	-	chr3	138572858	138594129	CEP70|ENST00000485115.1	-	138572858,138591853,138593708	138572932,138591956,138594129	0.913043
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	45620853	45620854	45620853	-	RAMPAGE_only	7	7	7	0.161174	2.521641	chr22	45620676	45621053	LTR|ERVL-MaLR|THE1D	-	chr22	45604431	45605647	LINC01589|NR_131244.1	-	45604431,45605400	45604758,45605647	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	59857064	59857071	59857064	-	RAMPAGE_only	5	5	11	0.253273	2.921928	chr3	59856822	59857060	SINE|MIR|MIRb	-	chr3	59747277	60081127	FHIT|NM_001320901.1	-	59747277,59922345,60011370,60014006,60014205,60070858,60080790	59752321,59922414,60011400,60014075,60014264,60070939,60081127	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	165655290	165655337	165655316	-	High_confidence	260	261	951	21.896607	6.595306	chr6	165655189	165655800	LINE|L2|L2a	+	chr6	165327288	165655336	PDE10A|ENST00000648917.1	-	165327288,165336122,165339277,165343390,165379193,165388297,165392645,165395180,165396316,165413500,165416188,165418634,165428657,165430286,165431421,165432973,165435236,165448927,165450241,165482314,165543439,165654812	165333127,165336211,165339358,165343502,165379366,165388453,165392796,165395264,165396459,165413687,165416281,165418777,165428709,165430345,165431472,165433129,165435377,165448977,165450362,165482343,165543568,165655336	0.935857
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	38058845	38058859	38058858	+	RAMPAGE_only	4	4	10	0.230248	3.121928	chr10	38058776	38059513	LINE|L1|L1MC2	+	chr10	38010669	38060053	ZNF33A|ENST00000458705.6	+	38010669,38012297,38016870,38017290,38054377	38010783,38012350,38017015,38017386,38060053	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	142926755	142926801	142926755	+	High_confidence	5	5	41	0.944018	5.171928	chr3	142926619	142927109	LINE|L1|HAL1	+	chr3	142926674	142942536	LOC100507389|NR_038455.1	+	142926674,142933204,142936422,142938474,142941398	142926896,142933268,142936646,142938653,142942536	0.853659
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	212429273	212429299	212429273	-	High_confidence	3	3	14	0.322348	3.521641	chr2	212428936	212429403	LTR|ERVL|LTR33	-	chr2	211750698	212429247	ERBB4|ENST00000435846.1	-	211750698,211788024,211947429,212124751,212429158	211750704,211788159,211947616,212124903,212429247	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	43510446	43510447	43510446	-	High_confidence	4	4	7	0.161174	2.807355	chr15	43510182	43510408	LINE|CR1|L3b	-	chr15	43407213	43510509	TP53BP1|NM_005657.2	-	43407213,43407942,43408896,43409646,43413118,43415593,43416224,43420304,43421024,43421854,43428015,43432193,43438323,43441525,43446386,43447365,43455891,43469857,43474672,43475564,43477592,43479396,43479858,43480894,43491668,43492001,43492283,43510369	43407570,43408088,43409096,43409741,43413334,43415809,43416416,43420735,43421174,43422126,43428168,43432677,43438416,43441583,43446590,43447485,43457218,43470066,43474767,43475694,43477759,43479526,43480017,43481022,43491753,43492095,43492468,43510509	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	31587195	31587275	31587201	+	High_confidence	42	43	174	4.006319	5.186116	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.994253
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	51354390	51354420	51354419	-	High_confidence	6	7	28	0.644695	3.946223	chr19	51354373	51354482	SINE|MIR|MIR3	-	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.928571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	114	114	114	2.624830	4.168803	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	89479889	89479890	89479889	-	High_confidence	59	59	59	1.358465	4.256992	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	29887659	29887758	29887659	-	RAMPAGE_only	7	7	104	2.394582	5.162099	chr16	29887302	29887611	SINE|Alu|AluY	-	chr16	29876853	29886019	SEZ6L2|ENST00000568407.2	-	29876853,29877270,29878286,29879863,29885585	29876950,29877467,29878425,29880064,29886019	0.980769
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	154038408	154038413	154038408	-	High_confidence	3	3	7	0.161174	2.584963	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	42816755	42816756	42816755	-	High_confidence	10	10	14	0.322348	2.950212	chr1	42816684	42816893	SINE|MIR|MIRc	+	chr1	42807051	42816804	SVBP|ENST00000372522.5	-	42807051,42816430,42816753	42807500,42816580,42816804	0.928571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	10941130	10941145	10941144	+	RAMPAGE_only	10	10	28	0.644695	4.532665	chr7	10941109	10941301	LINE|L2|L2b	-	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	127330859	127330881	127330880	-	High_confidence	2	2	8	0.184199	2.807355	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	108767934	108767935	108767934	+	High_confidence	5	5	7	0.161174	2.807355	chr11	108767811	108768278	DNA|TcMar-Tigger|Tigger2	+	chr11	108767313	108841476	DDX10|ENST00000534439.5	+	108767313,108767936,108838445,108841314	108767404,108768001,108838565,108841476	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	30561520	30561560	30561550	-	RAMPAGE_only	4	4	12	0.276298	3.095795	chr7	30561212	30561820	DNA|hAT?|MER99	+	chr7	30497076	30550761	AC005154.5|ENST00000598361.4	-	30497076,30498802,30500535,30524366,30550635	30497235,30498938,30500681,30524486,30550761	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	112570386	112570425	112570386	+	High_confidence	46	53	313	7.206770	6.283951	chr12	112570281	112570552	LTR|ERVL-MaLR|MLT1K	+	chr12	112570379	112847731	RPH3A|ENST00000549736.5	+	112570379,112649413,112651766,112792142,112828300,112836490,112847695	112570544,112649463,112651827,112792263,112828389,112836502,112847731	0.623003
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	35408105	35408141	35408105	+	RAMPAGE_only	3	3	11	0.253273	2.845351	chr1	35408149	35408455	LINE|L1|L1ME3G	+	chr1	35361704	35422058	ZMYM4|ENST00000457946.1	+	35361704,35370028,35370371,35381258,35381545,35387002,35387453,35388909,35389947,35392211,35392646,35393594,35396554,35397376,35398412,35398863,35399481,35405022,35405372,35408007,35413971,35415465,35418442,35419469	35361789,35370113,35370627,35381433,35381758,35387278,35387604,35389082,35390098,35392352,35392684,35393739,35396670,35397545,35398466,35399043,35399576,35405194,35405468,35408159,35414083,35415714,35418572,35422058	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	238486001	238486035	238486034	-	High_confidence	6	8	28	0.644695	4.106377	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.678571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	15758206	15758214	15758211	+	High_confidence	4	4	12	0.276298	3.418296	chr1	15758111	15758311	SINE|MIR|MIRb	-	chr1	15758418	15786594	FBLIM1|ENST00000375766.7	+	15758418,15764495,15764963,15767375,15768527,15770408,15774617,15777169,15784547	15758848,15764685,15765233,15767563,15768630,15770578,15774796,15777287,15786594	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	123061174	123061322	123061256	-	High_confidence	39	43	526	12.111057	6.340302	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.969582
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	158330279	158330299	158330279	+	RAMPAGE_only	2	2	9	0.207223	3.000000	chr3	158324235	158330363	LINE|L1|L1PA5	-	chr3	158203071	158543687	RSRC1|ENST00000482822.2	+	158203071,158298038,158354856,158460934,158537091,158543334	158203245,158298075,158354908,158461003,158537198,158543687	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	72305913	72305914	72305913	-	High_confidence	49	55	57	1.312415	4.765463	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144885.1	-	72301637,72302809,72305301,72305824	72302244,72302934,72305422,72305914	0.947368
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	182672885	182672924	182672923	-	High_confidence	10	11	53	1.220316	3.999205	chr1	182672886	182673055	DNA|hAT-Charlie|MER5A	+	chr1	182641813	182672932	RGS8|NM_001102450.2	-	182641813,182648136,182665968,182666871,182669623,182671656,182672818	182646917,182648303,182666033,182666973,182669752,182671730,182672932	0.886792
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	129439763	129439779	129439778	-	High_confidence	5	5	13	0.299323	3.418296	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129431265	129440007	MBD4|ENST00000503197.5	-	129431265,129432555,129433097,129433849,129434061,129436442,129437719,129439729	129431578,129432606,129433247,129433984,129434136,129437308,129437950,129440007	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	130978732	130978739	130978738	-	High_confidence	42	44	93	2.141309	5.636080	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.709677
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	166973419	166973426	166973424	-	RAMPAGE_only	5	8	15	0.345372	3.589898	chr1	166973297	166973476	SINE|MIR|MIR3	+	chr1	166918865	166975031	MSTRG.1838.4	-	166918865,166920706,166922592,166927066,166935300,166936590,166939513,166956732,166957768,166972901	166919390,166921379,166922809,166927180,166935477,166936737,166939570,166956852,166958101,166975031	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	29280818	29280840	29280827	+	High_confidence	5	6	15	0.345372	3.039149	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29280981	30010391	RBMS3|ENST00000434693.6	+	29280981,29434745,29488440,29587113,29739719,29762909,29868857,29884161,29897378,29899704,29936085,29944206,29988142,29991081,30003855	29281756,29434915,29488499,29587205,29739877,29762989,29868964,29884208,29897475,29899755,29936196,29944254,29988223,29991209,30010391	0.933333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	25400079	25400080	25400079	+	RAMPAGE_only	10	10	12	0.276298	2.845351	chr4	25399642	25400996	LINE|L2|L2a	-	chr4	25396718	25413871	ANAPC4|ENST00000505842.5	+	25396718,25396847,25402970,25405572,25406828,25407196,25409697,25413644	25396764,25396899,25403026,25405619,25406885,25407253,25409791,25413871	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	17910367	17910378	17910367	-	High_confidence	9	9	17	0.391422	3.577820	chr8	17908095	17912373	LTR|ERVK|HERVK-int	-	chr8	17864379	17910365	FGL1|ENST00000398056.6	-	17864379,17868547,17868915,17874018,17874361,17881998,17885491,17895446,17896169,17909884	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17895517,17896416,17910365	0.647059
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	5775174	5775184	5775174	+	RAMPAGE_only	9	9	25	0.575621	3.569774	chr19	5775110	5775356	LTR|ERVK|LTR3B_	-	chr19	5753510	5778734	CATSPERD|ENST00000309164.11	+	5753510,5754131,5757842,5759085,5763214,5766102,5768167,5770943,5772787,5776160,5778375	5753687,5754245,5757932,5759144,5763293,5766155,5768242,5771072,5772965,5776315,5778734	0.840000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	107155913	107155953	107155952	-	RAMPAGE_only	2	3	11	0.253273	2.921928	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	155881855	155881994	155881951	+	RAMPAGE_only	36	36	116	2.670879	4.530365	chr1	155881722	155882028	SINE|Alu|AluSq2	-	chr1	155859508	155885199	SYT11|ENST00000368324.4	+	155859508,155867964,155880499,155881197	155859795,155868791,155880623,155885199	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	100438676	100438677	100438676	+	RAMPAGE_only	9	13	13	0.299323	3.546594	chr13	100438447	100438841	LTR|ERVL|LTR47B2	+	chr13	100368471	100530432	PCCA|ENST00000458283.5	+	100368471,100425632,100449251,100527674,100530097	100368574,100425731,100449305,100527752,100530432	0.692308
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	10146459	10146464	10146463	+	RAMPAGE_only	6	6	12	0.276298	3.022055	chr8	10146471	10146716	LINE|L1|L1MB7	+	chr8	10095726	10428889	MSRA|ENST00000382490.9	+	10095726,10207832,10245103,10301533,10319882,10428147	10096043,10207901,10245223,10301638,10319989,10428889	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	119497205	119497217	119497205	-	RAMPAGE_only	2	2	6	0.138149	2.584963	chr12	119496915	119497202	LTR|ERVL-MaLR|MLT1I	-	chr12	119387990	119594240	AC002070.1|ENST00000535511.5	-	119387990,119553547,119594181	119388328,119553645,119594240	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	196897679	196897680	196897679	+	RAMPAGE_only	5	6	8	0.184199	2.521641	chr1	196897152	196897920	LTR|ERV1|LTR1B1	-	chr1	196888051	196918633	CFHR4|ENST00000608469.6	+	196888051,196902417,196905107,196906860,196907315,196910280,196912739,196914494,196914955,196918209	196888208,196902615,196905290,196907037,196907498,196910478,196912922,196914671,196915138,196918633	0.750000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	89888929	89888962	89888929	+	RAMPAGE_only	17	22	48	1.105192	4.000815	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.687500
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	115850839	115850857	115850839	+	RAMPAGE_only	3	3	11	0.253273	3.121928	chr5	115850763	115851205	LTR|ERV1|LTR56	-	chr5	115842037	115913900	MSTRG.20165.6	+	115842037,115866669,115870016,115895086,115902884,115906820,115913361	115842106,115866761,115870128,115895158,115902992,115906861,115913900	0.818182
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	177745054	177745073	177745054	-	RAMPAGE_only	2	2	8	0.184199	2.500000	chr1	177744683	177745823	LINE|L2|L2a	+	chr1	177393678	177597709	AL122019.1|ENST00000458070.1	-	177393678,177573727,177576710,177597570	177393788,177573784,177576950,177597709	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	57294895	57294918	57294895	+	RAMPAGE_only	6	6	14	0.322348	3.026987	chr19	57294864	57294942	LTR|ERV1|LTR23	-	chr19	57280050	57308562	MSTRG.13517.1	+	57280050,57284550,57290698,57291339	57280124,57284677,57291255,57308562	0.928571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	57487044	57487061	57487060	+	RAMPAGE_only	24	24	51	1.174266	4.861468	chr17	57486852	57487083	LINE|L2|L2c	-	chr17	57440689	57675059	MSI2|ENST00000579505.5	+	57440689,57529675,57596867,57615969,57627228,57652098,57674917	57440739,57529724,57596950,57616084,57627303,57652161,57675059	0.509804
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	102431237	102431260	102431244	-	High_confidence	27	27	116	2.670879	5.491211	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.931034
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	1267375	1267387	1267386	+	High_confidence	8	8	23	0.529571	4.061482	chr19	1267425	1267483	LINE|L2|L2c	+	chr19	1267411	1274810	CIRBP|ENST00000585913.5	+	1267411,1270927,1271139,1271328,1271550,1271980,1274306,1274651	1267443,1271036,1271246,1271467,1271632,1272051,1274440,1274810	0.739130
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	3926096	3926143	3926122	+	RAMPAGE_only	3	4	14	0.322348	3.521641	chr19	3926027	3926329	SINE|Alu|AluSq	+	chr19	3880619	3928082	ATCAY|NM_033064.4	+	3880619,3885726,3902486,3905433,3907733,3908267,3909485,3910802,3913757,3917741,3918805,3920765,3924582	3881008,3885844,3902545,3905655,3907919,3908370,3909617,3910889,3913856,3917777,3918877,3920798,3928082	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	91796463	91796470	91796463	+	RAMPAGE_only	5	6	12	0.276298	3.251629	chr10	91796343	91796573	DNA|hAT-Charlie|MER1A	-	chr10	91798311	91865276	TNKS2|ENST00000371627.4	+	91798311,91812982,91817133,91819269,91819481,91819938,91822295,91827016,91828284,91830922,91831102,91833852,91836918,91840560,91841282,91842171,91844918,91845751,91848382,91849511,91851215,91855028,91855613,91857424,91859461,91861998,91862936	91798889,91813207,91817229,91819306,91819557,91820033,91822362,91827203,91828406,91831014,91831181,91834024,91836998,91840706,91841448,91842391,91845028,91845940,91848635,91849594,91851336,91855126,91855688,91857530,91859648,91862155,91865276	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	165576525	165576540	165576539	-	High_confidence	4	5	8	0.184199	2.750000	chr6	165576342	165576862	LINE|L2|L2	+	chr6	165333024	165576448	PDE10A|ENST00000650117.1	-	165333024,165336122,165339277,165343390,165379193,165388297,165392645,165395180,165396316,165413500,165416188,165418634,165428657,165430286,165431421,165432973,165435236,165448927,165450241,165482314,165543439,165576411	165333127,165336211,165339358,165343502,165379366,165388453,165392796,165395264,165396459,165413687,165416281,165418777,165428709,165430345,165431472,165433129,165435377,165448977,165450362,165482343,165543568,165576448	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	36286849	36286850	36286849	-	RAMPAGE_only	15	15	15	0.345372	3.373557	chr11	36286616	36286962	LINE|L1|L1MD1	+	chr11	36274472	36289424	MSTRG.3925.6	-	36274472,36276136,36277088,36278476,36280711,36286820,36289361	36274772,36276240,36277123,36278616,36280837,36286845,36289424	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	32262742	32262745	32262742	+	High_confidence	4	4	10	0.230248	2.947703	chr6	32262048	32263749	LINE|L1|L1PA7	-	chr6	32262701	32407763	HCG23|ENST00000642577.1	+	32262701,32365779,32390213,32403668,32405453,32406116	32262809,32365839,32390753,32403792,32405557,32407763	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	160187371	160187410	160187392	+	High_confidence	9	9	45	1.036117	4.604667	chr5	160187374	160187670	LINE|L2|L2b	-	chr5	160187366	160238735	FABP6|ENST00000393980.8	+	160187366,160199048,160213735,160229545,160232097,160234819,160238605	160187454,160199157,160213819,160229624,160232273,160234909,160238735	0.933333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	26507870	26508590	26508334	-	RAMPAGE_only	92	139	805	18.534983	6.824198	chr8	26507740	26508856	LTR|Gypsy|MamGyp-int	-	chr8	26504679	26513967	PNMA2|NM_007257.5	-	26504679,26509547,26513815	26509243,26509677,26513967	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	9567531	9567549	9567531	+	RAMPAGE_only	7	7	25	0.575621	3.047210	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9557313	9576275	AC092821.1|ENST00000520314.2	+	9557313,9558368,9559174,9560109,9560816,9565091,9567489,9570765,9571460,9573002,9573465,9574846	9557580,9558452,9559348,9560191,9564325,9565303,9569202,9570892,9571573,9573093,9573534,9576275	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	74588194	74588196	74588194	-	RAMPAGE_only	12	21	30	0.690745	4.396292	chrX	74588187	74588473	SINE|Alu|AluSz	+	chrX	74585216	74614617	RLIM|ENST00000332687.10	-	74585216,74594305,74595808,74614421	74593061,74594389,74596000,74614617	0.933333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	380623	380634	380623	+	High_confidence	4	4	16	0.368397	3.030639	chr20	380404	380708	SINE|Alu|AluY	+	chr20	380628	397559	TRIB3|NM_021158.4	+	380628,388010,391286,396197	381169,388301,391579,397559	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	61517445	61517488	61517470	+	RAMPAGE_only	3	3	13	0.299323	3.084963	chr4	61517137	61518029	DNA|hAT-Charlie|Charlie17b	+	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.846154
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	54235396	54235441	54235396	-	RAMPAGE_only	2	3	15	0.345372	3.235926	chr12	54235340	54235626	SINE|Alu|AluY	+	chr12	54230945	54259545	CBX5|NM_001127322.1	-	54230945,54246114,54252040,54257513,54259269	54241905,54246215,54252227,54257692,54259545	0.933333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	50964390	50964433	50964432	-	RAMPAGE_only	5	5	14	0.322348	3.664498	chr17	50964310	50964604	SINE|Alu|AluSx	+	chr17	50962173	51046968	SPAG9|NM_001251971.1	-	50962173,50970706,50974770,50975862,50977107,50979745,50982523,50984922,50985697,50987111,50989676,50990449,50993763,50995056,50995443,50996564,50998443,50999660,51001714,51005211,51006084,51007268,51014231,51020158,51021157,51041500,51046499	50966387,50970856,50974947,50975901,50977221,50979917,50982672,50984990,50985778,50987237,50989872,50990668,50993935,50995224,50995533,50996694,50998617,50999717,51001845,51005263,51006237,51007326,51014353,51020258,51021365,51041651,51046968	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	56656147	56656150	56656147	+	RAMPAGE_only	6	6	14	0.322348	3.521641	chr19	56655948	56656243	SINE|Alu|AluY	-	chr19	56643158	56657246	SMIM17|NM_001193628.1	+	56643158,56645567,56647557,56655102	56643210,56645836,56647634,56657246	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	62582103	62582122	62582103	+	RAMPAGE_only	9	10	32	0.736794	4.389365	chr5	62581720	62582538	LINE|L2|L2c	-	chr5	62578820	62628582	IPO11|ENST00000409534.1	+	62578820,62591576,62601763,62627153	62578935,62591672,62601848,62628582	0.968750
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	120140709	120140713	120140709	+	RAMPAGE_only	3	3	6	0.138149	2.584963	chrX	120140230	120140875	LTR|ERV1|LTR9C	+	chrX	120036235	120146854	RHOXF1-AS1|ENST00000553843.5	+	120036235,120120851,120138997,120143722,120145637	120036532,120121139,120139119,120143900,120146854	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	200411676	200411684	200411683	+	High_confidence	4	4	8	0.184199	2.521641	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411693	200478360	AC104461.1|ENST00000647823.1	+	200411693,200444617,200472040,200473908,200477967	200411962,200444945,200472119,200474186,200478360	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	176652459	176652473	176652459	+	RAMPAGE_only	3	3	12	0.276298	3.095795	chr5	176652030	176652581	LTR|ERVL-MaLR|MLT1K	-	chr5	176647619	176657056	TSPAN17|ENST00000507471.1	+	176647619,176652742,176654894,176656077,176656699,176656894	176647702,176652913,176655020,176656125,176656816,176657056	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31121301	31121338	31121301	-	RAMPAGE_only	339	353	728	16.762071	5.024779	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.920330
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	52617133	52617150	52617133	+	High_confidence	4	4	12	0.276298	3.022055	chr13	52616905	52617215	SINE|Alu|AluSg	+	chr13	52617469	52643784	HNRNPA1L2|NM_001011725.1	+	52617469,52621988,52627437,52632421,52637304,52642405	52617682,52622264,52627578,52632494,52637446,52643784	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	15417190	15417225	15417190	+	High_confidence	4	4	13	0.299323	2.918296	chr8	15417004	15417387	LTR|ERVL-MaLR|MSTA	+	chr8	15417214	15673836	TUSC3|ENST00000503191.5	+	15417214,15483385,15623079,15659506,15662155,15673746	15417305,15483483,15623249,15659647,15662296,15673836	0.692308
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	35770976	35771137	35770976	-	RAMPAGE_only	31	34	135	3.108351	5.203741	chr13	35770879	35771025	DNA?|DNA?|MER131	-	chr13	35768651	35855861	DCLK1|NM_001195415.1	-	35768651,35788211,35793365,35805698,35808223,35809017,35810834,35822728,35827634,35828249,35836032,35839091,35854498,35855509	35774699,35788285,35793479,35805779,35808320,35809095,35810968,35822875,35827754,35828307,35836141,35839176,35854593,35855861	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	76915464	76915469	76915464	-	RAMPAGE_only	4	4	9	0.207223	2.947703	chr10	76915312	76915672	LTR|ERVL-MaLR|MLT1I	+	chr10	76887411	76970999	KCNMA1|ENST00000639321.1	-	76887411,76889450,76891524,76909965,76914056,76914935,76944772,76949141,76953800,76969973	76887515,76889569,76891719,76910096,76914137,76915049,76944965,76949366,76953924,76970999	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	109427992	109428008	109428007	+	RAMPAGE_only	32	37	49	1.128216	5.175735	chr11	109428015	109428114	SINE|tRNA|LFSINE_Vert	+	chr11	109422119	109429114	C11orf87|ENST00000327419.6	+	109422119,109423374	109422263,109429114	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	32075876	32075899	32075879	+	High_confidence	10	10	34	0.782844	4.594672	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32075878	32157216	MSTRG.7080.1	+	32075878,32090501,32117142,32146262,32149901,32152422,32154620	32076657,32094386,32117287,32146340,32150033,32152528,32157216	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	115804320	115804476	115804357	-	RAMPAGE_only	9	11	82	1.888035	4.928101	chr3	115804301	115804475	SINE|MIR|MIR3	-	chr3	115802362	116086561	LSAMP|ENST00000539563.5	-	115802362,115841844,115842457,115852482,116019514,116086323	115810414,115841993,115842578,115852617,116019640,116086561	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	2990740	2990755	2990754	-	RAMPAGE_only	8	8	30	0.690745	3.940760	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.766667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	25261145	25261157	25261156	+	RAMPAGE_only	3	3	6	0.138149	2.584963	chr15	25255613	25261749	LINE|L1|L1PA5	+	chr15	25255578	25419445	MSTRG.7932.72	+	25255578,25266430,25266911,25268328,25269604,25271417,25277366,25278846,25418787	25261549,25266614,25267044,25268453,25269733,25271534,25277409,25278884,25419445	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	76094058	76094059	76094058	+	RAMPAGE_only	52	52	56	1.289390	3.866225	chr4	76093875	76094237	LTR|ERVL-MaLR|MLT1A	+	chr4	76082498	76112412	ART3|ENST00000511188.1	+	76082498,76097643,76098954,76100290,76100794,76100989,76103936,76104596,76105521,76107760,76112385	76082535,76097676,76098987,76100320,76100824,76101019,76103969,76104629,76105554,76107793,76112412	0.803571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	111662085	111662136	111662135	+	High_confidence	5	5	27	0.621670	4.392747	chr9	111662069	111662225	LINE|L2|L2	-	chr9	111661570	111670246	GNG10|NM_001198664.1	+	111661570,111666814,111669271	111661715,111666946,111670246	0.814815
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	53220846	53220858	53220846	-	RAMPAGE_only	2	2	10	0.230248	2.921928	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	147937499	147937599	147937528	+	RAMPAGE_only	7	8	52	1.197291	4.596900	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.615385
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	9987142	9987163	9987162	+	High_confidence	22	22	57	1.312415	5.056317	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.508772
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	185933548	185933569	185933548	-	High_confidence	3	3	8	0.184199	2.750000	chr4	185933361	185933839	LTR|ERVL-MaLR|MLT1C	-	chr4	185775280	185933370	SORBS2|ENST00000488562.1	-	185775280,185894296,185932935	185775366,185894373,185933370	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31447537	31447612	31447611	-	RAMPAGE_only	5	5	20	0.460496	3.884184	chr12	31447606	31447734	LINE|L1|X9_LINE	+	chr12	31382222	31590442	DENND5B|NM_001308339.1	-	31382222,31389323,31392266,31392613,31398174,31399653,31402497,31409262,31413435,31415366,31423596,31424534,31426292,31433154,31442774,31447537,31451939,31460193,31479588,31495809,31499605,31500392,31590385	31387786,31389498,31392393,31392696,31398362,31399772,31402643,31409384,31413564,31415448,31423675,31424687,31426424,31433248,31442925,31447769,31452476,31460381,31480255,31495919,31499671,31500652,31590442	0.950000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	130428167	130428213	130428178	-	High_confidence	13	13	47	1.082167	5.142915	chr2	130428080	130428364	SINE|Alu|AluY	-	chr2	130426191	130428176	FAR2P2|ENST00000415406.1	-	130426191,130427703	130426263,130428176	0.851064
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	99410041	99410057	99410056	+	RAMPAGE_only	4	4	14	0.322348	3.700440	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.785714
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	156752100	156752132	156752112	-	High_confidence	4	7	22	0.506546	4.011365	chr1	156752098	156752165	LINE|L2|L2c	-	chr1	156742106	156752232	HDGF|NM_001126051.1	-	156742106,156743651,156744162,156745007,156745296,156752037	156743455,156743878,156744348,156745146,156745373,156752232	0.954545
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	22174028	22174033	22174028	+	RAMPAGE_only	5	5	9	0.207223	2.750000	chr6	22172656	22174159	LTR|ERVL-MaLR|THE1D-int	+	chr6	22146653	22197219	CASC15|ENST00000606197.1	+	22146653,22173997,22191566,22194044	22147292,22174062,22191656,22197219	0.777778
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	24729155	24729163	24729155	+	High_confidence	4	4	10	0.230248	2.947703	chr16	24729126	24729241	SINE|MIR|MIRb	-	chr16	24729694	24826221	TNRC6A|ENST00000315183.11	+	24729694,24730252,24750725,24758338,24776932,24789231,24793472,24794543,24795906,24797489,24797914,24804176,24805013,24805604,24806205,24806573,24809349,24815146,24816815,24818592,24820138,24822076,24822873,24823431	24729846,24730300,24750813,24758360,24777358,24791817,24793649,24794719,24795939,24797570,24797966,24804319,24805151,24805733,24806283,24806784,24809481,24815305,24816956,24818700,24820360,24822147,24823013,24826221	0.600000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	102706282	102706283	102706282	-	RAMPAGE_only	13	14	14	0.322348	2.815072	chr10	102706170	102706459	SINE|Alu|AluSc8	+	chr10	102673730	102714407	ARL3|ENST00000260746.5	-	102673730,102685815,102689892,102699372,102705345,102714272	102676941,102686001,102689943,102699489,102705489,102714407	0.928571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	84142670	84142738	84142737	+	RAMPAGE_only	6	7	22	0.506546	3.846439	chr10	84142771	84142861	DNA|hAT-Charlie|Charlie4z	+	chr10	84139439	84153245	GHITM|ENST00000372134.5	+	84139439,84141461,84142654,84143994,84144874,84148729,84150054,84150708,84152263	84139593,84141629,84142754,84144106,84145016,84148838,84150243,84150880,84153245	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	160099439	160099493	160099467	-	High_confidence	8	8	24	0.552596	3.969002	chr1	160099439	160099671	SINE|MIR|MIRb	+	chr1	160091339	160099435	MSTRG.1760.1	-	160091339,160091807,160092281,160092923,160093709,160094868,160098408,160099215	160091631,160091938,160092695,160093331,160094171,160095246,160098517,160099435	0.958333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	44646462	44646497	44646481	+	RAMPAGE_only	3	3	16	0.368397	3.139572	chr3	44646305	44646632	LINE|L1|L1MC5a	+	chr3	44625094	44647778	ZNF197|ENST00000334075.6	+	44625094,44629073,44630813,44631061,44632104,44632472,44646490	44625143,44629544,44630946,44631221,44632196,44632599,44647778	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	128896441	128896447	128896441	+	RAMPAGE_only	6	6	11	0.253273	2.721928	chr11	128896213	128896607	LINE|L1|L1MD1	-	chr11	128891468	128916853	KCNJ5|ENST00000338350.4	+	128891468,128909851,128911263,128916408	128891721,128909940,128912210,128916853	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	75626279	75626305	75626304	-	High_confidence	23	25	60	1.381489	4.396362	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.983333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	20694517	20694518	20694517	+	RAMPAGE_only	9	9	9	0.207223	2.947703	chr9	20694323	20694599	DNA|hAT-Charlie|Charlie15b	-	chr9	20683977	20995955	MSTRG.24507.5	+	20683977,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20684293,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	102125053	102125077	102125076	-	High_confidence	3	3	14	0.322348	3.546594	chr8	102124979	102125028	LINE|L2|L2b	-	chr8	101686541	102124907	NCALD|NM_001040630.1	-	101686541,101692790,101719251,101915808,102020236,102124569	101689406,101692896,101719648,101915858,102020289,102124907	0.785714
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	168787065	168787088	168787065	+	High_confidence	3	3	12	0.276298	3.459432	chr1	168786791	168787303	LTR|ERVL-MaLR|MLT1L	+	chr1	168786940	168792888	LINC00626|NR_024160.1	+	168786940,168788780,168792330	168787228,168788889,168792888	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	75460622	75460625	75460624	-	RAMPAGE_only	4	7	11	0.253273	2.646439	chr16	75460383	75460811	LINE|L2|L2a	+	chr16	75443243	75464416	TMEM170A|NM_001304997.1	-	75443243,75451668,75464231	75447688,75451839,75464416	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	109498844	109498845	109498844	-	High_confidence	6	6	9	0.207223	2.641604	chr9	109498741	109499030	LINE|L2|L2a	+	chr9	109375693	109498313	PTPN3|ENST00000262539.7	-	109375693,109381651,109382301,109383306,109389232,109391137,109391470,109404447,109406461,109408320,109409998,109410228,109420423,109422717,109426949,109428620,109433072,109436882,109438113,109445239,109448810,109454495,109457172,109457291,109463296,109498218	109379633,109381787,109382447,109383551,109389379,109391199,109391561,109404608,109406618,109408377,109410076,109410415,109420600,109422852,109427122,109428684,109433161,109436970,109438234,109445292,109448855,109454574,109457215,109457399,109463451,109498313	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	195356099	195356212	195356211	-	High_confidence	65	78	280	6.446950	5.358743	chr3	195355936	195357733	LINE|L1|L1M1	+	chr3	195333081	195356212	ACAP2|ENST00000423531.3	-	195333081,195336931,195342470,195345258,195356067	195333123,195336976,195342654,195345317,195356212	0.828571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	121974512	121974532	121974512	-	High_confidence	3	3	11	0.253273	3.321928	chr10	121974357	121974506	DNA|hAT-Charlie|MER5A	-	chr10	121959364	121974285	NSMCE4A|ENST00000468209.5	-	121959364,121959500,121960357,121961422,121963237,121965285,121967654,121970938,121974003	121959410,121959595,121960406,121961517,121963328,121965385,121967806,121971069,121974285	0.909091
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	246355492	246355532	246355492	-	High_confidence	5	5	19	0.437472	3.536887	chr1	246355309	246355511	LINE|L1|L1PB1	+	chr1	245929897	246355335	SMYD3|ENST00000453676.5	-	245929897,246327200,246330479,246335366,246355030,246355180	245929937,246327337,246330537,246335474,246355094,246355335	0.789474
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	36104888	36104907	36104888	+	High_confidence	6	6	15	0.345372	3.640224	chr21	36104755	36109248	LTR|ERV1|HERVIP10FH-int	+	chr21	36104880	36109690	AP000688.2|ENST00000422473.1	+	36104880,36107597	36105123,36109690	0.533333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	80485592	80485605	80485592	+	High_confidence	18	18	43	0.990067	4.619390	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.906977
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	65722895	65722905	65722895	-	High_confidence	9	11	20	0.460496	3.932138	chr5	65722781	65722883	DNA|hAT-Ac|OldhAT1	-	chr5	65680687	65723035	SGTB|ENST00000506816.1	-	65680687,65685367,65704278,65708488,65712960,65720707,65722756	65680794,65685472,65704378,65708558,65713064,65720829,65723035	0.950000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	81442560	81442728	81442647	-	RAMPAGE_only	4	5	82	1.888035	5.024622	chr8	81442364	81442801	LINE|L1|L1ME2	+	chr8	81440325	81447484	PMP2|NM_002677.3	-	81440325,81444499,81444816,81447313	81443448,81444601,81444989,81447484	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	71417331	71417366	71417331	+	RAMPAGE_only	3	3	13	0.299323	3.418296	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.538462
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65181252	65181302	65181252	-	High_confidence	3	4	21	0.483521	3.576618	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65180020	65181834	AP003068.2|ENST00000526623.2	-	65180020,65181224	65181072,65181834	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	176162936	176162938	176162936	-	RAMPAGE_only	9	14	18	0.414447	3.836592	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.611111
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	32953969	32953978	32953969	+	RAMPAGE_only	3	3	7	0.161174	2.584963	chr11	32953932	32953995	LINE|CR1|L3	-	chr11	32934583	32975630	QSER1|ENST00000524678.1	+	32934583,32953856,32955295,32955987,32957868,32966299,32969045,32973396,32975247	32935435,32954179,32955412,32956121,32958086,32966437,32969143,32973549,32975630	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	20658403	20658427	20658426	+	High_confidence	8	8	20	0.460496	3.892407	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658311	20865967	MSTRG.24507.4	+	20658311,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20820323,20820940,20822988,20862577,20865925	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20820425,20821071,20823115,20862712,20865967	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	80115068	80115069	80115068	+	RAMPAGE_only	12	12	12	0.276298	2.855389	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.833333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	24085656	24085657	24085656	-	High_confidence	10	10	10	0.230248	3.121928	chr2	24085501	24085858	LTR|ERV1|MER31A	+	chr2	24077432	24085215	TP53I3|NM_004881.4	-	24077432,24079443,24080818,24082884,24084188	24077761,24079640,24081031,24083152,24085215	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	216213330	216213363	216213362	+	RAMPAGE_only	4	4	19	0.437472	4.058814	chr2	216213295	216214689	LTR|ERV1|MER101-int	-	chr2	216109296	216220192	MSTRG.15153.2	+	216109296,216113015,216116658,216117745,216119042,216122061,216125916,216127535,216130874,216132324,216137087,216138088,216141185,216148082,216160067,216161978,216190224,216192638,216194918,216204321,216205187,216217714	216109457,216113129,216116842,216117794,216119165,216122253,216126031,216127674,216130987,216132387,216137225,216138179,216141319,216148276,216160161,216162048,216190334,216192735,216194986,216204396,216217322,216220192	0.947368
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	18706999	18707062	18707061	-	High_confidence	11	11	47	1.082167	4.653216	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18705417	18706129	IGSF22|ENST00000510673.1	-	18705417,18705816	18705617,18706129	0.617021
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	69473193	69473260	69473193	-	RAMPAGE_only	14	22	41	0.944018	4.584184	chr2	69473074	69473226	SINE|MIR|MIR3	-	chr2	69467786	69643717	AAK1|ENST00000409085.8	-	69467786,69476879,69478950,69480859,69482710,69495984,69505568,69507420,69509230,69514470,69518953,69520833,69525032,69527215,69530007,69530624,69532040,69542522,69544435,69556859,69642877,69643574	69475963,69476990,69479061,69480961,69482812,69496080,69505673,69507578,69509460,69514749,69519240,69520988,69525112,69527319,69530140,69530706,69532162,69542665,69544544,69556978,69643274,69643717	0.975610
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	9569153	9569163	9569153	+	RAMPAGE_only	4	4	12	0.276298	2.855389	chr12	9568603	9569205	LTR|ERV1|HERVE-int	-	chr12	9557313	9576275	AC092821.1|ENST00000520314.2	+	9557313,9558368,9559174,9560109,9560816,9565091,9567489,9570765,9571460,9573002,9573465,9574846	9557580,9558452,9559348,9560191,9564325,9565303,9569202,9570892,9571573,9573093,9573534,9576275	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	89210447	89210462	89210447	+	RAMPAGE_only	2	2	7	0.161174	2.521641	chr3	89210434	89210500	DNA|hAT-Ac|OldhAT1	+	chr3	89107675	89479659	EPHA3|ENST00000494014.1	+	89107675,89127208,89209859,89340915,89341754,89395836,89399317,89407268,89408066,89413140,89419204,89429105,89431149,89449224,89450176,89472463,89479396	89107836,89127273,89210520,89341071,89342090,89395961,89399480,89407371,89408131,89413266,89419390,89429167,89431359,89449374,89450370,89472522,89479659	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	91179462	91179526	91179462	-	High_confidence	44	46	193	4.443791	6.275637	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.948187
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	149217922	149217932	149217931	+	High_confidence	42	48	73	1.680812	5.463152	chr6	149217688	149218082	LTR|ERVL-MaLR|MLT1J	+	chr6	149217935	149245554	AL031056.1|ENST00000635954.1	+	149217935,149218622,149229931,149243728	149218084,149218776,149229995,149245554	0.767123
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	18793975	18793987	18793975	-	High_confidence	13	15	41	0.944018	4.763295	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18787970	18793982	LINC00652|NR_026884.1	-	18787970,18789573,18793664	18788898,18789709,18793982	0.878049
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	123236945	123236949	123236945	-	RAMPAGE_only	2	4	8	0.184199	2.807355	chr9	123236851	123237154	SINE|Alu|AluSz	+	chr9	123179006	123213908	STRBP|ENST00000479114.2	-	123179006,123184131,123212584,123213588	123179227,123184298,123212708,123213908	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	82081601	82081756	82081613	-	RAMPAGE_only	7	7	75	1.726862	5.193761	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078996	82085660	MSTRG.11694.3	-	82078996,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82085034,82085237,82085481	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084953,82085156,82085402,82085660	0.986667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	27613406	27613429	27613428	+	High_confidence	2	3	8	0.184199	2.807355	chr14	27612881	27613894	LTR|ERV1|MER4B-int	+	chr14	27612610	27639636	LINC00645|ENST00000557399.1	+	27612610,27613420,27619822,27634243,27636419	27612677,27613496,27619873,27634344,27639636	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	51886849	51886866	51886865	-	RAMPAGE_only	3	3	8	0.184199	2.521641	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51878400	51887889	ZNF577|ENST00000638538.1	-	51878400,51880322,51880678,51886115,51886820,51887831	51878515,51880401,51880877,51886145,51886912,51887889	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	9140379	9140422	9140393	+	High_confidence	77	77	313	7.206770	6.349696	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.808307
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	47067487	47067513	47067498	-	High_confidence	369	399	1333	30.692089	6.099982	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.908477
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	51914029	51914038	51914029	-	RAMPAGE_only	3	3	10	0.230248	2.521928	chr1	51913771	51914133	LTR|ERVL-MaLR|MLT1H2	+	chr1	51907955	51990764	RAB3B|NM_002867.3	-	51907955,51933317,51937293,51976889,51990551	51920114,51933442,51937412,51977117,51990764	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	123900672	123900686	123900672	+	RAMPAGE_only	8	9	20	0.460496	3.784184	chrX	123900710	123900786	SINE|Alu|AluY	+	chrX	123860271	123913965	XIAP|ENST00000355640.3	+	123860271,123885630,123888618,123891237,123892730,123900492,123906987	123860545,123886539,123888718,123891316,123892773,123900693,123913965	0.900000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	123071385	123071604	123071386	-	RAMPAGE_only	42	66	253	5.825280	4.907073	chr11	123071151	123071444	SINE|Alu|AluSx	+	chr11	123069864	123195281	CLMP|ENST00000448775.3	-	123069864,123074701,123083084,123083679,123084511,123097794,123194912	123073774,123074843,123083207,123083847,123084713,123097952,123195281	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	193656743	193656763	193656762	+	RAMPAGE_only	3	3	12	0.276298	3.277613	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193648765	193659514	OPA1|ENST00000482865.1	+	193648765,193654861,193657079,193658886,193659481	193648871,193655027,193657232,193658995,193659514	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	24414135	24414155	24414135	-	RAMPAGE_only	4	4	14	0.322348	3.026987	chr1	24414047	24414345	SINE|Alu|AluSx1	-	chr1	24357004	24416934	STPG1|ENST00000468303.5	-	24357004,24360850,24369673,24373701,24379652,24383901,24391560,24391923,24401318,24413673	24358619,24361041,24369839,24373810,24379823,24384003,24391679,24392067,24401456,24416934	0.928571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	93183584	93183699	93183654	-	RAMPAGE_only	17	17	117	2.693904	5.205025	chr14	93183223	93184271	LTR|Gypsy|MamGyp-int	-	chr14	93182195	93184904	MOAP1|NM_022151.4	-	93182195,93184558,93184809	93184362,93184713,93184904	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	136188682	136188714	136188713	-	RAMPAGE_only	2	2	7	0.161174	2.807355	chr6	136188641	136188760	DNA|hAT-Blackjack|MER94B	+	chr6	136095959	136191875	AL138828.1|ENST00000585946.5	-	136095959,136162017,136162251,136191604	136096288,136162144,136162348,136191875	0.714286
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	64226142	64226180	64226158	-	High_confidence	144	150	519	11.949883	7.168056	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.959538
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	64242582	64242620	64242619	+	High_confidence	5	5	15	0.345372	3.240224	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	74334476	74335408	74335026	-	RAMPAGE_only	103	112	1000	23.024823	7.369536	chr11	74334907	74335067	SINE|Alu|AluJr4	-	chr11	74330311	74398465	PGM2L1|NM_173582.4	-	74330311,74338467,74342460,74342884,74343322,74345468,74346731,74347147,74351382,74368491,74370901,74371710,74374414,74398050	74336754,74338601,74342650,74343014,74343416,74345649,74346829,74347337,74351576,74368575,74370986,74371817,74374582,74398465	0.995000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	123390725	123390761	123390725	+	High_confidence	2	2	12	0.276298	3.277613	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	200824887	200824888	200824887	+	RAMPAGE_only	8	8	10	0.230248	2.921928	chr2	200824672	200824970	SINE|Alu|AluYm1	-	chr2	200811545	200827338	BZW1|ENST00000409600.5	+	200811545,200813207,200815340,200815666,200816324,200817105,200817973,200818222,200818754,200819981,200821182,200822146	200811990,200813281,200815517,200815761,200816390,200817241,200818083,200818393,200818901,200820120,200821305,200827338	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	14375656	14375689	14375656	-	RAMPAGE_only	2	3	14	0.322348	3.521641	chr21	14375499	14375631	SINE|Alu|AluY	-	chr21	14371114	14383187	HSPA13|ENST00000285667.3	-	14371114,14375651,14378198,14381202,14383094	14374284,14375819,14378412,14381543,14383187	0.928571
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	232551105	232551110	232551105	+	High_confidence	4	5	8	0.184199	3.000000	chr2	232551133	232551224	SINE|MIR|MIRb	+	chr2	232550806	232567205	EIF4E2|ENST00000454501.1	+	232550806,232556415,232557883,232564246,232566828,232567077	232551218,232556530,232558018,232564351,232566981,232567205	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	73736756	73736757	73736756	-	High_confidence	18	18	19	0.437472	3.683542	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73731905	73737335	TPRKB|ENST00000470012.1	-	73731905,73732583,73734428,73737301	73732285,73732700,73734591,73737335	0.842105
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	147383058	147383089	147383088	+	RAMPAGE_only	5	5	15	0.345372	3.640224	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147235015	147384205	STK32A|NM_001112724.1	+	147235015,147239538,147278123,147279246,147323897,147343005,147351064,147361516,147370653,147373168,147375089,147383440,147383889	147235199,147239686,147278179,147279398,147324071,147343043,147351154,147361614,147370770,147373294,147375218,147383505,147384205	0.866667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	35935596	35935614	35935600	+	High_confidence	2	2	8	0.184199	2.807355	chr19	35935345	35935652	SINE|Alu|AluSx1	-	chr19	35935549	35945767	LRFN3|ENST00000588831.5	+	35935549,35936750,35939409,35944547	35935782,35937555,35940840,35945767	0.625000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	116648808	116648848	116648808	-	RAMPAGE_only	2	2	10	0.230248	3.121928	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	122392344	122392369	122392368	+	High_confidence	2	2	6	0.138149	2.584963	chr10	122392193	122392492	LINE|L1|L1MC5	-	chr10	122392302	122432355	PLEKHA1|NM_021622.4	+	122392302,122393180,122397917,122400342,122406575,122412919,122415858,122417899,122424198,122424895,122426941,122429623	122392372,122393341,122397974,122400388,122406673,122413045,122416002,122417968,122424263,122424959,122427031,122432355	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	12409848	12409855	12409848	+	RAMPAGE_only	8	8	13	0.299323	3.546594	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	53258318	53258336	53258324	-	RAMPAGE_only	2	3	8	0.184199	2.521641	chr1	53258163	53258293	LINE|L2|L2-3_Crp	-	chr1	53245748	53257323	LRP8|ENST00000529670.5	-	53245748,53246955,53250689,53255116,53257239	53245981,53247056,53250862,53255185,53257323	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	117877465	117877505	117877504	-	High_confidence	7	11	42	0.967043	4.431687	chr11	117877415	117877598	SINE|MIR|MIRb	+	chr11	117836975	117877486	FXYD6|NM_001164831.2	-	117836975,117839780,117840318,117841147,117841790,117841989,117842718,117877298	117838277,117839830,117840368,117841184,117841865,117842028,117842781,117877486	0.952381
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	42816864	42816884	42816883	-	High_confidence	8	10	18	0.414447	3.969816	chr1	42816684	42816893	SINE|MIR|MIRc	+	chr1	42807051	42816804	SVBP|ENST00000372522.5	-	42807051,42816430,42816753	42807500,42816580,42816804	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	129904510	129904566	129904528	-	RAMPAGE_only	4	4	24	0.552596	3.970176	chr8	129904249	129904641	LTR|ERVL|LTR16E2	+	chr8	129849291	129903351	FAM49B|ENST00000639004.1	-	129849291,129849326,129850834,129852161,129854265,129855610,129855674,129862228,129862262,129871374,129879388,129903311	129849324,129849369,129850914,129852278,129854343,129855673,129855747,129862260,129862335,129871496,129879471,129903351	0.958333
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	21200777	21200826	21200825	+	High_confidence	17	20	62	1.427539	5.323238	chr6	21200835	21201081	LINE|L1|L1MC3	+	chr6	21200811	21231441	CDKAL1|ENST00000476517.1	+	21200811,21201109,21230847	21200892,21201274,21231441	0.951613
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	191245194	191245222	191245221	+	High_confidence	5	5	20	0.460496	3.721612	chr2	191245108	191245343	LINE|L1|L1M4b	+	chr2	191245184	191346274	MYO1B|ENST00000418908.5	+	191245184,191276886,191296110,191329934,191341460,191346235	191245257,191277030,191296226,191330029,191341565,191346274	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	166850227	166850330	166850227	+	RAMPAGE_only	7	10	63	1.450564	4.638892	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	27739697	27739717	27739697	+	High_confidence	4	4	8	0.184199	2.521641	chr7	27739664	27739799	SINE|MIR|MIR3	+	chr7	27739372	27829765	TAX1BP1|ENST00000543117.5	+	27739372,27748517,27758030,27765833,27769675,27785162,27785398,27787417,27792005,27793065,27794322,27796115,27799964,27816348,27816889,27827737,27828627	27739550,27748686,27758133,27766021,27769834,27785311,27785489,27787603,27792230,27793212,27794446,27796219,27800090,27816394,27817038,27827820,27829765	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	78620056	78620058	78620056	+	High_confidence	48	83	83	1.911060	5.455995	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.891566
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	43600373	43600395	43600394	-	RAMPAGE_only	4	6	12	0.276298	3.277613	chr22	43600372	43600515	DNA|hAT-Charlie|MER5A1	+	chr22	43551845	43672270	EFCAB6|ENST00000468552.1	-	43551845,43576296,43580463,43590073,43600068,43608481,43626446,43632104,43635101,43667103,43668871,43671972,43672245	43555096,43576488,43580659,43590229,43600263,43608600,43626679,43632238,43635216,43667272,43669045,43672133,43672270	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	70661965	70661988	70661965	-	RAMPAGE_only	3	3	11	0.253273	2.913977	chr2	70661824	70662049	SINE|MIR|MIRb	+	chr2	70656783	70768177	ADD2|ENST00000264436.8	-	70656783,70672877,70674677,70676795,70677757,70678703,70683590,70688023,70690785,70692402,70695720,70696244,70704320,70706225,70713065,70767885	70663735,70673006,70674825,70676885,70677877,70678961,70683767,70688122,70690929,70692552,70695801,70696396,70704459,70706442,70713184,70768177	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	136489406	136489430	136489429	+	High_confidence	14	18	40	0.920993	4.684184	chr8	136489231	136489726	LTR|ERV1|MER61F	+	chr8	136489447	136529876	LINC02055|ENST00000523232.1	+	136489447,136515965,136519147,136529794	136489502,136516300,136519239,136529876	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	20423566	20423611	20423610	-	RAMPAGE_only	3	3	12	0.276298	3.022055	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20395954	20424921	MSTRG.12800.3	-	20395954,20408949,20424785	20399038,20409045,20424921	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	31694351	31694362	31694361	-	RAMPAGE_only	5	6	9	0.207223	2.750000	chr1	31694205	31694316	SINE|MIR|MIR3	-	chr1	31688860	31697010	COL16A1|ENST00000373667.4	-	31688860,31689049,31689740,31690366,31690528,31691187,31691416,31691597,31692004,31692473,31692597,31692766,31693091,31695185,31695760,31696087,31696962	31688971,31689085,31689851,31690393,31690573,31691226,31691512,31691642,31692067,31692509,31692642,31692808,31693154,31695221,31695787,31696141,31697010	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	2740064	2740079	2740074	+	High_confidence	10	11	27	0.621670	4.392747	chr12	2740070	2740311	DNA|hAT-Charlie|MER112	+	chr12	2740092	2742855	LINC02371|ENST00000613818.1	+	2740092,2742073,2742504	2740201,2742180,2742855	0.703704
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	176003058	176003080	176003074	-	High_confidence	5	5	18	0.414447	3.947703	chr4	176003011	176003179	SINE|MIR|MIR3	+	chr4	175632936	176002691	GPM6A|NM_005277.4	-	175632936,175640128,175640752,175651833,175673679,175701574,175812190,176002308	175635057,175640194,175640829,175651987,175673836,175701767,175812249,176002691	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	45911669	45911753	45911669	-	High_confidence	12	14	123	2.832053	4.834639	chr20	45911555	45911651	SINE|MIR|MIRc	-	chr20	45898762	45912047	PLTP|ENST00000477313.5	-	45898762,45899461,45899621,45899835,45902266,45902439,45904799,45904941,45906267,45907691,45907840,45909515,45909941,45911151,45911352	45899063,45899538,45899685,45899878,45902334,45902604,45904859,45905118,45906359,45907755,45907904,45909671,45910070,45911251,45912047	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	45378428	45378459	45378458	+	High_confidence	3	3	10	0.230248	2.947703	chr13	45378076	45378674	LTR|ERV1|HERVE-int	-	chr13	45378529	45390879	TPT1-AS1|ENST00000520585.5	+	45378529,45379194,45379898,45383090,45383759,45389734,45390757	45378671,45379335,45380001,45383235,45383838,45389820,45390879	0.700000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	39021127	39021156	39021127	+	High_confidence	2	3	9	0.207223	2.750000	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.888889
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	102449836	102449845	102449836	+	High_confidence	27	27	125	2.878103	5.720624	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.912000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	113468660	113468705	113468660	+	High_confidence	3	4	22	0.506546	3.784184	chr13	113468663	113468942	LINE|L1|L1MC5a	+	chr13	113468900	113476135	DCUN1D2-AS|ENST00000414992.5	+	113468900,113475859	113468954,113476135	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	113758141	113758149	113758141	-	RAMPAGE_only	3	3	8	0.184199	2.521641	chr1	113758040	113758255	SINE|Alu|AluSq2	+	chr1	113697201	113759155	PHTF1|ENST00000393357.6	-	113697201,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113759155	0.500000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	6639916	6639948	6639916	-	RAMPAGE_only	3	3	14	0.322348	3.521641	chr1	6639724	6639885	SINE|MIR|MIR	-	chr1	6634167	6645057	DNAJC11|ENST00000465508.5	-	6634167,6636116,6637197,6637446,6639901,6644557,6645040	6635700,6636246,6637340,6638364,6640057,6644674,6645057	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	45585827	45585834	45585833	-	RAMPAGE_only	8	8	15	0.345372	3.056565	chr17	45585678	45585861	SINE|Alu|AluSp	+	chr17	45508108	45550335	LRRC37A4P|ENST00000581296.2	-	45508108,45508266,45508484,45510243,45513184,45513867,45517860,45519227,45521306,45539162,45539891,45542763,45545604,45547726	45508160,45508406,45508539,45510293,45513289,45515379,45518148,45519372,45521425,45539243,45539963,45542835,45545676,45550335	0.866667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	134720245	134720284	134720274	-	High_confidence	28	29	83	1.911060	5.802692	chr2	134719933	134720560	LTR|ERV1|MER39	+	chr2	134455763	134720443	MSTRG.14595.3	-	134455763,134458031,134466113,134502900,134550569,134552047,134713199,134720191	134456776,134458173,134466225,134502997,134550661,134552091,134713319,134720443	0.734940
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	202563349	202563369	202563349	+	RAMPAGE_only	6	6	22	0.506546	3.975418	chr2	202563151	202563452	SINE|Alu|AluSg4	+	chr2	202377433	202567751	BMPR2|ENST00000374574.2	+	202377433,202464808,202467518,202513718,202514887,202518821,202520086,202530793,202532584,202542310,202552715,202559695	202377550,202464979,202467689,202513829,202514979,202519052,202520201,202530954,202532732,202542447,202552888,202567751	0.954545
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	101399031	101399063	101399038	-	High_confidence	6	6	39	0.897968	4.178738	chr13	101399007	101399070	LINE|Penelope|Penelope1_Vert	+	chr13	101368544	101399154	NALCN|ENST00000376200.5	-	101368544,101376699,101376916,101378569,101395182,101399018	101368998,101376828,101377056,101378653,101395365,101399154	0.974359
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	55610909	55610910	55610909	-	High_confidence	7	7	7	0.161174	2.521641	chr3	55610883	55610977	SINE|tRNA-Deu|AmnSINE2	+	chr3	55508310	55610910	ERC2|ENST00000486496.5	-	55508310,55606779,55610575	55511276,55606966,55610910	0.857143
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	183115953	183115968	183115967	-	High_confidence	3	3	8	0.184199	2.807355	chr3	183115868	183116225	LTR|ERV1|MER51E	-	chr3	183015217	183116075	MCCC1|ENST00000492597.5	-	183015217,183017265,183020129,183022416,183025754,183033990,183037217,183039025,183041566,183045412,183052158,183057310,183070998,183071209,183072365,183086692,183094558,183115473	183015566,183017337,183020237,183022554,183025804,183034077,183037434,183039135,183041750,183045540,183052240,183057422,183071120,183071357,183072487,183086788,183094605,183116075	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	91161	91162	91161	+	RAMPAGE_only	11	11	16	0.368397	2.999581	chr4	90576	91239	LINE|L1|L1MB2	-	chr4	53328	99123	MSTRG.18416.5	+	53328,59429,60057,85730	54101,59556,60153,99123	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	27801476	27801644	27801571	+	RAMPAGE_only	14	14	145	3.338599	4.682379	chr12	27801558	27801735	DNA|hAT-Charlie|MER117	-	chr12	27780253	27803040	KLHL42|NM_020782.1	+	27780253,27791707,27797714	27781202,27791901,27803040	0.986207
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	32536545	32536558	32536545	+	RAMPAGE_only	2	2	7	0.161174	2.584963	chr5	32536384	32536887	DNA|hAT-Charlie|MER1A	+	chr5	32531817	32601200	SUB1|ENST00000512913.5	+	32531817,32571090,32588511,32591562,32598960,32601004	32531916,32571174,32588584,32591685,32599069,32601200	0.571429
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	43013356	43013393	43013392	-	High_confidence	28	28	43	0.990067	4.926037	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	174190721	174190722	174190721	+	RAMPAGE_only	6	6	9	0.207223	2.500000	chr1	174190471	174191121	DNA|TcMar-Tigger|Tigger1	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.555556
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	49448222	49448223	49448222	-	High_confidence	14	14	17	0.391422	3.149397	chr19	49448212	49448629	LINE|L2|L2b	+	chr19	49446298	49448062	PIH1D1|ENST00000594845.5	-	49446298,49446550,49447023,49447826,49448000	49446423,49446694,49447099,49447908,49448062	0.647059
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	24983562	24983723	24983700	+	RAMPAGE_only	29	30	206	4.743114	6.237797	chr15	24983509	24983805	SINE|Alu|AluSx	+	chr15	24981993	25000276	MSTRG.7932.21	+	24981993,24998969,25000244	24998486,24999078,25000276	1.000000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	170089393	170089515	170089451	-	High_confidence	16	16	121	2.786004	5.752688	chr4	170089443	170089514	LINE|L2|L2b	+	chr4	170070618	170089394	AADAT|ENST00000510340.5	-	170070618,170073135,170078508,170087115,170088395,170089260	170070652,170073345,170078583,170087248,170088564,170089394	0.867769
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	119179238	119179297	119179296	+	High_confidence	4	4	20	0.460496	3.405822	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.950000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	45243428	45243914	45243514	-	RAMPAGE_only	155	178	1157	26.639720	4.677181	chr11	45243462	45243579	DNA|hAT-Charlie|MER5A	+	chr11	45240300	45286319	SYT13|ENST00000020926.7	-	45240300,45246382,45252420,45254269,45255665,45286024	45244356,45246512,45252722,45254404,45255891,45286319	0.997407
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	124673274	124673293	124673287	-	High_confidence	3	4	10	0.230248	2.646439	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.800000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	115296235	115296238	115296237	-	High_confidence	6	8	11	0.253273	3.121928	chr5	115296013	115296236	SINE|MIR|MIRb	-	chr5	115267638	115296268	CCDC112|ENST00000395557.4	-	115267638,115268881,115269702,115271212,115275215,115275993,115276964,115279646,115284786,115295909	115267918,115269000,115269798,115271626,115275606,115276069,115277054,115279768,115284908,115296268	0.727273
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	27612576	27612587	27612576	+	High_confidence	86	86	145	3.338599	5.785155	chr14	27612284	27612881	LTR|ERVL|LTR66	+	chr14	27612587	27639636	LINC00645|ENST00000557359.5	+	27612587,27613420,27634243,27636419	27612677,27613496,27634344,27639636	0.917241
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31119278	31119313	31119278	-	High_confidence	12	12	52	1.197291	4.285742	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.923077
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	56216141	56216142	56216141	+	High_confidence	8	8	8	0.184199	2.750000	chr4	56216025	56216165	SINE|MIR|MIR3	+	chr4	56216101	56328625	KIAA1211|ENST00000504228.6	+	56216101,56272320,56298213,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56216273,56272492,56298349,56307699,56310734,56313379,56316689,56323567,56324266,56328625	0.875000
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	52615378	52615445	52615423	-	High_confidence	4	6	36	0.828894	4.594672	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.916667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	137268347	137268383	137268353	-	High_confidence	3	3	13	0.299323	3.418296	chr7	137267941	137268351	LTR|ERV1|HERVE_a-int	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.846154
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	177499694	177499726	177499694	+	RAMPAGE_only	4	6	24	0.552596	3.882045	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.666667
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	206161376	206161455	206161454	+	High_confidence	15	16	170	3.914220	5.801671	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	0.935294
diencephalon_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	75433974	75434017	75433998	-	High_confidence	15	15	48	1.105192	5.075078	chr16	75433678	75434907	DNA|TcMar-Tigger|Tigger17	+	chr16	75293709	75433489	CFDP1|NM_006324.2	-	75293709,75305023,75395089,75411824,75412534,75414577,75433288	75294042,75305182,75395209,75411952,75412754,75414695,75433489	0.625000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	157533600	157533615	157533600	-	High_confidence	383	397	709	30.610286	6.511472	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157460214	157533606	VEPH1|ENST00000487753.5	-	157460214,157470313,157495211,157533512	157460355,157470529,157495506,157533606	0.933709
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	16101453	16102602	16102303	+	RAMPAGE_only	2169	2182	7454	321.818153	5.593299	chr19	16102068	16102357	SINE|Alu|AluSz	+	chr19	16088710	16102946	TPM4|ENST00000591645.2	+	16088710,16089044,16093535,16093683,16101263	16088849,16089120,16093598,16093753,16102946	0.997988
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	162781359	162781436	162781435	+	RAMPAGE_only	4	5	47	2.029173	3.828303	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	122064327	122064347	122064332	+	RAMPAGE_only	18	18	55	2.374564	4.999186	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.781818
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	45424375	45424396	45424384	-	High_confidence	5	7	20	0.863478	4.121928	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	0.950000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chrX	44951147	44951148	44951147	+	RAMPAGE_only	11	12	13	0.561261	3.546594	chrX	44950752	44951268	LTR|ERV1|LTR10D	+	chrX	44873551	45111411	KDM6A|ENST00000621147.4	+	44873551,44873923,44961283,44974665,45010960,45020609,45034930,45037654,45053828,45059005,45059246,45061323,45063421,45069578,45076696,45078399,45107456,45110078,45111381	44873712,44873987,44961392,44974715,45011019,45020730,45034985,45037689,45053955,45059104,45059466,45061419,45063817,45070357,45076826,45078493,45107536,45110249,45111411	0.846154
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr8	71854506	71854533	71854532	+	RAMPAGE_only	17	19	34	1.467912	4.862576	chr8	71854285	71854726	LTR|ERVL|MLT2D	+	chr8	71843560	72052713	MSC-AS1|ENST00000524152.5	+	71843560,71962922,71965408,72052538	71843704,71963048,71965534,72052713	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	2757851	2757866	2757851	+	High_confidence	4	6	14	0.604434	3.378783	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.928571
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	16981569	16981637	16981569	-	High_confidence	26	26	132	5.698953	5.079961	chr1	16981567	16981905	LTR|ERV1|LTR64	+	chr1	16974501	16981586	MFAP2|NM_001135247.1	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16981513	16975023,16975342,16975730,16976545,16976794,16976923,16977195,16978314,16981586	0.931818
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	33129943	33130063	33130062	+	RAMPAGE_only	12	12	81	3.497085	5.493809	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	10363706	10363707	10363706	+	High_confidence	19	19	22	0.949826	3.921928	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.909091
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	39809852	39809865	39809852	-	High_confidence	3	3	17	0.733956	3.572469	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.764706
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	82081606	82081706	82081606	-	High_confidence	6	6	47	2.029173	4.368159	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.595745
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	2975656	2975665	2975656	+	RAMPAGE_only	2	2	6	0.259043	2.584963	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2991344	3008090	RAP1GAP2|ENST00000574515.1	+	2991344,2995336,2998220,3005340,3005954,3008010	2991397,2995466,2998376,3005440,3006041,3008090	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	153967486	153967512	153967486	+	High_confidence	13	15	57	2.460912	4.852639	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.789474
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr22	37855584	37855643	37855642	+	RAMPAGE_only	5	5	23	0.992999	4.262692	chr22	37855622	37855711	SINE|tRNA|LFSINE_Vert	+	chr22	37849480	37888630	EIF3L|ENST00000406934.5	+	37849480,37851279,37858678,37862968,37863271,37870175,37874369,37875840,37877673,37886764,37888425	37850063,37851490,37858740,37863038,37863345,37870347,37874524,37876011,37878171,37886845,37888630	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	10710653	10710654	10710653	-	High_confidence	27	27	28	1.208869	3.197884	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.857143
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chrX	19350008	19350009	19350008	+	RAMPAGE_only	6	6	9	0.388565	2.500000	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19352828	19355445	PDHA1|ENST00000479146.1	+	19352828,19354490,19355348	19353173,19354583,19355445	0.555556
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	180830987	180831010	180831009	+	High_confidence	5	5	34	1.467912	4.562500	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.911765
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr10	78977971	78977973	78977971	-	RAMPAGE_only	3	5	7	0.302217	2.521641	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78962394	ZMIZ1-AS1|ENST00000428862.5	-	78943327,78945911,78960504,78961253	78944747,78945989,78960716,78962394	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	3536839	3536889	3536839	-	High_confidence	9	11	63	2.719955	5.215785	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.825397
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	3380960	3380961	3380960	+	High_confidence	64	65	69	2.978998	5.364305	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.652174
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	39154613	39154641	39154613	-	High_confidence	4	4	8	0.345391	2.500000	chr3	39154504	39154649	LINE|L2|L2c	+	chr3	39141850	39154602	CSRNP1|NM_001320560.1	-	39141850,39144136,39144996,39146477,39154496	39144044,39144451,39145256,39146722,39154602	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	100102298	100102299	100102298	+	High_confidence	8	8	12	0.518087	3.251629	chr7	100102098	100102390	SINE|Alu|AluSx1	+	chr7	100102060	100107148	AP4M1|ENST00000422582.5	+	100102060,100102674,100102863,100103408,100103611,100104091,100104873,100105044,100105239,100105444,100105958,100106240,100106402,100106657	100102393,100102781,100102960,100103519,100103692,100104154,100104940,100105098,100105346,100105539,100106003,100106291,100106514,100107148	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	2242922	2242923	2242922	+	High_confidence	44	44	45	1.942825	4.834209	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.977778
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	174410019	174410020	174410019	+	High_confidence	13	13	15	0.647608	3.039149	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410036	174428859	SCRN3|ENST00000548921.5	+	174410036,174422884,174424474,174427712	174410225,174423047,174424649,174428859	0.866667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	15657883	15657884	15657883	+	RAMPAGE_only	13	13	13	0.561261	3.180833	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	179333001	179333002	179333001	+	RAMPAGE_only	33	35	45	1.942825	4.103778	chr3	179332959	179333116	SINE|MIR|MIR1_Amn	-	chr3	179329633	179333730	ZNF639|ENST00000466663.1	+	179329633,179329933,179332988,179333268	179329728,179330055,179333123,179333730	0.822222
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr8	143558019	143558020	143558019	+	High_confidence	8	8	8	0.345391	2.750000	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.750000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr22	36481985	36481993	36481985	-	High_confidence	12	12	23	0.992999	2.731419	chr22	36481702	36481993	SINE|Alu|AluSc	-	chr22	36467035	36482030	TXN2|ENST00000216185.6	-	36467035,36476732,36480574,36481563	36467917,36476856,36480837,36482030	0.956522
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	21551125	21551149	21551125	-	High_confidence	5	6	10	0.431739	2.721928	chr17	21551016	21551106	DNA|hAT-Charlie|Charlie16a	-	chr17	21528309	21551678	C17orf51|NM_001113434.4	-	21528309,21550995	21535538,21551678	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr22	50757126	50757147	50757133	+	High_confidence	7	7	16	0.690782	3.577820	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr8	32927967	32927977	32927976	+	High_confidence	251	269	557	24.047855	6.703899	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927969	33044802	MSTRG.39649.2	+	32927969,33041634,33044366	32928093,33041743,33044802	0.915619
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	94996905	94996906	94996905	-	High_confidence	29	30	30	1.295217	3.909368	chr12	94996903	94997043	SINE|MIR|MIR3	+	chr12	94971331	94997447	NDUFA12|ENST00000550187.5	-	94971331,94994169,94997307	94971620,94994257,94997447	0.966667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	124355447	124355448	124355447	-	RAMPAGE_only	9	10	12	0.518087	3.277613	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124346592	124388824	MSTRG.10371.18	-	124346592,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124378236,124385744,124388684	124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356803,124362297,124363799,124372610,124378384,124385887,124388824	0.916667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	98891328	98891329	98891328	-	High_confidence	5	8	8	0.345391	2.750000	chr4	98891322	98891802	LINE|L1|L1MB2	+	chr4	98881009	98890898	EIF4E|ENST00000505194.5	-	98881009,98884921,98887078,98887888,98890786	98881142,98885061,98887192,98887952,98890898	0.875000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	129698722	129698744	129698737	+	RAMPAGE_only	5	9	24	1.036173	3.816403	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	0.916667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr10	78977917	78977924	78977923	-	RAMPAGE_only	14	14	25	1.079347	4.142915	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78962394	ZMIZ1-AS1|ENST00000428862.5	-	78943327,78945911,78960504,78961253	78944747,78945989,78960716,78962394	0.800000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	65602823	65602875	65602866	+	High_confidence	23	23	166	7.166865	5.572904	chr12	65602914	65603138	LINE|L2|L2a	+	chr12	65602868	65606503	LINC02454|ENST00000539116.1	+	65602868,65606027	65602981,65606503	0.831325
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	41521716	41521717	41521716	-	High_confidence	5	5	8	0.345391	2.521641	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41513745	41521719	KRT15|ENST00000393976.6	-	41513745,41514648,41515471,41515884,41516103,41516807,41517082,41518329,41519344,41521684	41514120,41514674,41515692,41516010,41516265,41516964,41517165,41519010,41519872,41521719	0.875000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr13	51382030	51382060	51382047	-	RAMPAGE_only	3	3	15	0.647608	2.985228	chr13	51381694	51382000	SINE|Alu|AluSq4	-	chr13	51365502	51384691	INTS6|ENST00000483441.5	-	51365502,51367804,51368938,51374207,51374653,51376047,51378238,51379461,51382028,51383328,51383588	51365845,51367898,51369310,51374439,51374796,51376174,51378454,51379572,51382123,51383461,51384691	0.933333
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	59619868	59619923	59619894	+	High_confidence	1496	1716	5363	231.541555	5.493024	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.945180
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr22	24011756	24011757	24011756	+	High_confidence	6	6	6	0.259043	2.584963	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.833333
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	194486575	194486613	194486575	-	High_confidence	2	2	10	0.431739	2.947703	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194403464	194486659	MSTRG.29844.9	-	194403464,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194486659	0.900000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	151158498	151158499	151158498	-	High_confidence	6	6	9	0.388565	2.750000	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.777778
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr13	113187330	113187344	113187343	-	High_confidence	7	9	24	1.036173	3.642490	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.958333
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	166850075	166850124	166850123	+	RAMPAGE_only	15	18	31	1.338390	4.281728	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.967742
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr22	41653658	41653689	41653688	+	RAMPAGE_only	3	5	13	0.561261	3.392747	chr22	41653710	41653849	DNA|hAT-Charlie|MER5A	+	chr22	41656952	41661699	XRCC6|ENST00000478914.1	+	41656952,41658251,41661330	41657032,41658352,41661699	0.692308
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	32403116	32403244	32403148	-	RAMPAGE_only	40	46	139	6.001170	5.793024	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.992806
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	17336685	17336727	17336685	+	High_confidence	15	16	40	1.726955	4.753056	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.825000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	6590246	6590286	6590257	+	High_confidence	6	6	51	2.201868	4.235088	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.921569
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	49539126	49539151	49539150	+	RAMPAGE_only	44	49	68	2.935824	4.934808	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49542601	49543633	RCN3|ENST00000593483.1	+	49542601,49543105	49542668,49543633	0.676471
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	77011252	77011280	77011279	+	RAMPAGE_only	5	5	14	0.604434	2.699514	chr4	77011235	77011415	DNA|hAT-Charlie|MER117	+	chr4	77014870	77021639	SEPT11|ENST00000506047.1	+	77014870,77019164,77020501	77015017,77019261,77021639	0.785714
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	127531647	127531689	127531647	-	RAMPAGE_only	3	3	19	0.820304	4.037401	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127505342	127568885	MSTRG.42449.2	-	127505342,127505702,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127505680,127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127568885	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr13	52661555	52661558	52661555	+	RAMPAGE_only	3	3	9	0.388565	2.750000	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	0.888889
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr21	45184516	45184517	45184516	+	RAMPAGE_only	6	8	8	0.345391	2.750000	chr21	45184448	45184750	SINE|Alu|AluJb	-	chr21	45171641	45226560	ADARB1|ENST00000360697.4	+	45171641,45175729,45180329,45182584,45183361,45184473,45184922,45204554,45220835,45222017	45171684,45176664,45180444,45182753,45183510,45184593,45185091,45204736,45221014,45226560	0.875000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	42959077	42959078	42959077	+	High_confidence	11	12	15	0.647608	3.506891	chr1	42959103	42959181	SINE|MIR|MIR3	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.933333
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr8	143281653	143281687	143281686	-	High_confidence	27	29	104	4.490084	5.456652	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.596154
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	68385473	68385474	68385473	+	High_confidence	117	117	118	5.094519	5.373469	chr1	68384987	68385624	LTR|ERV1|MER41B	+	chr1	68385484	68386115	MSTRG.1657.1	+	68385484	68386115	0.949153
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	218287266	218287280	218287279	-	High_confidence	86	86	188	8.116691	5.945584	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.755319
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr13	24580610	24580623	24580610	+	High_confidence	5	5	18	0.777130	3.836592	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	140700445	140700452	140700445	+	High_confidence	942	1286	2768	119.505319	5.085087	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.985910
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	20658321	20658349	20658338	+	High_confidence	22	22	92	3.971998	5.503034	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.597826
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	187529460	187529476	187529460	-	RAMPAGE_only	3	5	13	0.561261	3.418296	chr2	187529293	187529670	LTR|ERVL-MaLR|MLT1B	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.846154
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	40608591	40608592	40608591	+	RAMPAGE_only	9	9	10	0.431739	2.947703	chr19	40608638	40608924	SINE|Alu|AluSq2	+	chr19	40610212	40611922	LTBP4|ENST00000598256.1	+	40610212,40611151,40611858	40610657,40611394,40611922	0.800000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	187513652	187513653	187513652	-	High_confidence	17	18	22	0.949826	3.553763	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	0.863636
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr15	74174548	74174572	74174571	+	High_confidence	77	101	369	15.931164	4.688856	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	0.970190
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	55280218	55280251	55280218	-	High_confidence	6	9	34	1.467912	3.744772	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr10	6009151	6009156	6009155	-	RAMPAGE_only	5	5	10	0.431739	2.721928	chr10	6008866	6009108	DNA|hAT-Charlie|Charlie20a	-	chr10	5952370	5978187	IL15RA|NM_001243539.1	-	5952370,5956378,5959753,5960366,5963742,5966144,5977776	5953206,5956454,5959786,5960567,5963841,5966339,5978187	0.600000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	245860512	245860513	245860512	-	RAMPAGE_only	7	7	7	0.302217	2.521641	chr1	245860451	245860544	DNA|hAT-Tip100|UCON132b	-	chr1	245749350	245929937	SMYD3|ENST00000470510.5	-	245749350,245764040,245814341,245858495,245863798,245915529,245927930,245929869	245749664,245764149,245814415,245858670,245863886,245915640,245928033,245929937	0.857143
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	19344364	19344405	19344388	-	RAMPAGE_only	11	11	47	2.029173	4.420756	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.978723
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr18	39800293	39800314	39800293	-	High_confidence	23	23	90	3.885650	6.000024	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.577778
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr15	30624357	30624368	30624364	+	High_confidence	13	25	49	2.115520	4.233007	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.897959
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	37903557	37903558	37903557	-	High_confidence	7	7	8	0.345391	2.521641	chr9	37903533	37903620	SINE|MIR|MIR3	+	chr9	37887603	37904110	SLC25A51|ENST00000377716.6	-	37887603,37899828,37903530	37888592,37899950,37904110	0.750000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	129587809	129587810	129587809	+	RAMPAGE_only	10	10	11	0.474913	3.321928	chr9	129587825	129588125	SINE|Alu|AluSp	+	chr9	129608883	129636131	NTMT1|NM_001286796.1	+	129608883,129632649,129634053,129635207	129609178,129632865,129634306,129636131	0.636364
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	52215803	52215867	52215807	+	RAMPAGE_only	4	4	26	1.122521	4.238901	chr19	52215807	52215838	LINE|L2|L2b	-	chr19	52220982	52226401	PPP2R1A|ENST00000391791.4	+	52220982,52222098,52225716	52221133,52222241,52226401	0.538462
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	59651209	59651256	59651209	+	RAMPAGE_only	9	11	33	1.424738	4.260333	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.878788
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	142474407	142474421	142474407	-	High_confidence	14	15	25	1.079347	4.403856	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.880000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	11963601	11963821	11963658	-	RAMPAGE_only	23	32	188	8.116691	5.261458	chr11	11963645	11963694	DNA|hAT-Ac|OldhAT1	-	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.989362
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr8	53523963	53523977	53523963	-	High_confidence	12	13	27	1.165695	4.243856	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.888889
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr21	28539618	28539620	28539618	+	High_confidence	7	16	18	0.777130	3.454822	chr21	28539394	28539851	LTR|ERVL-MaLR|MLT1C	+	chr21	28539317	28540355	LINC00161|ENST00000412526.5	+	28539317,28540052	28539884,28540355	0.888889
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	81170392	81170413	81170392	-	High_confidence	3	3	13	0.561261	3.022055	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.846154
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr10	133369997	133370021	133370020	-	RAMPAGE_only	5	5	18	0.777130	3.836592	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	162759949	162759976	162759975	+	RAMPAGE_only	3	3	9	0.388565	2.503258	chr1	162760014	162760180	SINE|MIR|MIR3	+	chr1	162632469	162780421	DDR2|ENST00000367921.7	+	162632469,162655210,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162780421	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	115939545	115939619	115939597	+	High_confidence	623	732	1581	68.257915	6.833492	chr9	115939412	115941194	LINE|L1|L1MB7	-	chr9	115939558	116020779	MSTRG.42281.4	+	115939558,115956095,116000846,116011352,116012626	115939664,115956595,116001010,116012530,116020779	0.689437
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	27525744	27525746	27525744	+	High_confidence	5	9	13	0.561261	3.188722	chr1	27525728	27525810	LINE|L2|L2b	+	chr1	27525804	27530561	BX293535.1|ENST00000443579.1	+	27525804,27530359	27525885,27530561	0.538462
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr10	63594824	63594840	63594824	+	RAMPAGE_only	3	4	15	0.647608	3.640224	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	77532082	77532107	77532106	+	High_confidence	15	18	24	1.036173	3.720176	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.958333
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr13	23867097	23867113	23867097	-	RAMPAGE_only	2	2	6	0.259043	2.584963	chr13	23866458	23867698	LINE|L2|L2a	+	chr13	23730188	23889398	MSTRG.10546.1	-	23730188,23760095,23805949,23809849,23836239,23837551,23839648,23841334,23858859,23862301,23864140,23869291,23870012,23874845,23879267,23881698,23886332,23889131	23730445,23760217,23806069,23809924,23836349,23837756,23839726,23841488,23858912,23862362,23864189,23869448,23870195,23874909,23879354,23881787,23886506,23889398	0.666667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	77076182	77076194	77076193	-	High_confidence	75	82	258	11.138863	6.784319	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77073419	77076250	MSTRG.12722.3	-	77073419,77076104	77074598,77076250	0.748062
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr21	29077464	29077517	29077486	+	High_confidence	11	11	28	1.208869	4.110577	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr20	44696111	44696112	44696111	-	High_confidence	6	6	6	0.259043	2.584963	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	135965718	135965762	135965748	+	High_confidence	18	18	145	6.260214	5.865825	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.979310
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	96087577	96087578	96087577	+	RAMPAGE_only	9	9	13	0.561261	3.180833	chr14	96087499	96087670	SINE|MIR|MIR3	-	chr14	96039371	96093887	MSTRG.12897.3	+	96039371,96086510,96091751	96039527,96091606,96093887	0.923077
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	58755976	58755977	58755976	-	RAMPAGE_only	11	11	11	0.474913	3.095795	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	100829513	100829541	100829523	+	High_confidence	3	3	13	0.561261	3.026987	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	35432451	35432476	35432451	-	High_confidence	13	25	41	1.770129	4.771928	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.951220
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	37163366	37163367	37163366	-	RAMPAGE_only	6	6	8	0.345391	3.000000	chr3	37163292	37163695	LTR|ERVL-MaLR|MLT1J2	+	chr3	37052889	37174564	LRRFIP2|ENST00000336686.8	-	37052889,37054410,37055085,37058789,37063741,37065809,37066223,37072789,37075023,37083635,37091466,37094791,37096615,37102923,37105454,37108072,37108636,37109526,37109652,37110990,37112914,37115053,37121491,37121634,37127629,37129062,37148893,37174538	37053961,37054515,37055165,37058910,37063791,37065942,37066325,37072882,37075116,37083806,37091538,37094908,37096660,37103013,37105523,37108129,37108684,37109571,37109703,37111065,37112980,37115095,37121536,37121691,37127680,37129149,37149038,37174564	0.875000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	112935972	112936001	112936000	-	High_confidence	10	12	28	1.208869	4.000646	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	0.928571
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	73144744	73144753	73144752	-	RAMPAGE_only	4	4	8	0.345391	2.750000	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113221	73149292	MSTRG.30763.12	-	73113221,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73141740,73142241,73142639,73144744,73146763,73147240,73148812	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73141843,73142385,73142767,73144832,73146873,73147432,73149292	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	148279242	148279274	148279273	+	High_confidence	22	22	125	5.396736	5.766349	chr1	148279033	148279814	LINE|L1|L1MEc	+	chr1	148279256	148288811	MSTRG.2491.1	+	148279256,148287689	148279544,148288811	0.976000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	15006394	15006427	15006421	+	RAMPAGE_only	2	2	9	0.388565	2.750000	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	14997747	15038323	PDXDC1|ENST00000450288.3	+	14997747,14998339,15006393,15008778,15009680,15016128,15017119,15017320,15018839,15022703,15026642,15028877,15029950,15031734,15032860,15033277,15034285,15034456,15035448,15036015	14997826,14998405,15006583,15008847,15009759,15016213,15017168,15017422,15018965,15022754,15026706,15028966,15030056,15031906,15032979,15033399,15034378,15034553,15035553,15038323	0.888889
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	5680226	5680262	5680240	-	High_confidence	8	8	48	2.072347	4.791306	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.979167
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr13	110179297	110179344	110179297	-	RAMPAGE_only	9	9	60	2.590433	5.315175	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	0.950000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	127914681	127914704	127914681	-	High_confidence	3	3	9	0.388565	2.641604	chr9	127914519	127914632	SINE|MIR|MIRb	-	chr9	127908317	127914762	ST6GALNAC4|ENST00000495983.1	-	127908317,127909950,127912267,127914655	127908581,127910528,127912680,127914762	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	162781245	162781294	162781286	+	RAMPAGE_only	8	8	24	1.036173	3.970573	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.916667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	129486648	129486659	129486648	+	High_confidence	4	5	8	0.345391	2.521641	chr3	129486534	129486712	LINE|L2|L2c	-	chr3	129487505	129520355	IFT122|ENST00000511425.5	+	129487505,129488256,129492140,129499901,129502710,129504318,129506408,129507667,129512311,129514388,129515487,129517468,129519106,129519567,129520175	129487927,129488397,129492194,129500068,129502882,129504421,129506549,129507762,129512412,129514554,129515599,129517594,129519186,129519732,129520355	0.875000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	9140393	9140428	9140393	+	High_confidence	39	39	134	5.785301	6.091832	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.761194
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr22	18149863	18149871	18149868	+	High_confidence	51	52	103	4.446910	4.912727	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.970874
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	102431237	102431249	102431244	-	High_confidence	19	19	84	3.626606	5.388285	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.869048
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	80017386	80017396	80017386	-	RAMPAGE_only	3	4	8	0.345391	2.807355	chr4	80016551	80017392	LINE|L2|L2a	+	chr4	79905570	80071620	ANTXR2|ENST00000449651.5	-	79905570,79907404,79977620,79978006,79983877,79984818,80008520,80018897,80024636,80031622,80033471,80035971,80054271,80055149,80055359,80055931,80069435,80071582	79906172,79907467,79977701,79978174,79983970,79984863,80008616,80018976,80024755,80031692,80033570,80036032,80054352,80055218,80055467,80056013,80069507,80071620	0.750000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	100268280	100268281	100268280	+	RAMPAGE_only	37	39	44	1.899651	3.858832	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.954545
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	182030747	182030784	182030773	+	High_confidence	7	7	22	0.949826	3.204448	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.727273
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chrX	53546454	53546461	53546454	-	RAMPAGE_only	4	4	8	0.345391	2.521641	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53532095	53549505	HUWE1|ENST00000426907.5	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543885,53544559,53545028,53546435,53546703,53547672,53548958	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505	0.750000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	9987162	9987163	9987162	+	High_confidence	19	19	28	1.208869	3.565448	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9987214	10003097	EMC3-AS1|ENST00000440568.1	+	9987214,9987814,9988711,10002716	9987264,9987905,9988747,10003097	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	104030726	104030727	104030726	+	High_confidence	103	104	121	5.224040	5.979852	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.942149
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr21	38235513	38235530	38235513	+	RAMPAGE_only	8	8	28	1.208869	4.226474	chr21	38235271	38235576	SINE|Alu|AluSx	+	chr21	38229914	38301826	KCNJ15|NM_001276438.1	+	38229914,38296925,38299243	38230023,38297023,38301826	0.857143
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	114624940	114625007	114625006	-	High_confidence	41	43	167	7.210039	5.367117	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.790419
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	4355592	4355593	4355592	-	High_confidence	344	345	345	14.894991	4.976982	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.956522
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	154975518	154975546	154975524	+	High_confidence	7	7	19	0.820304	3.826875	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.894737
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	61615038	61615046	61615045	+	High_confidence	9	13	20	0.863478	4.321928	chr11	61614843	61615211	LTR|ERVL-MaLR|THE1B	+	chr11	61615036	61636241	RPLP0P2|ENST00000478959.1	+	61615036,61624984,61628841,61636101	61615128,61625127,61629039,61636241	0.550000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	110440319	110440321	110440320	-	RAMPAGE_only	16	22	28	1.208869	4.363713	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.928571
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	17686017	17686058	17686057	+	RAMPAGE_only	19	31	63	2.719955	5.183641	chr17	17685599	17686175	LINE|L2|L2b	+	chr17	17682494	17793143	RAI1|ENST00000471135.2	+	17682494,17683545,17724027,17792932	17682563,17683703,17724159,17793143	0.793651
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr8	2728417	2728432	2728417	-	High_confidence	2	2	7	0.302217	2.521641	chr8	2728201	2728557	LTR|ERV1|LTR12C	+	chr8	2701472	2728417	AC246817.2|ENST00000520570.1	-	2701472,2705214,2728329	2701894,2705286,2728417	0.714286
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	173369507	173369534	173369533	-	High_confidence	14	16	54	2.331390	5.057925	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363779	173369809	MSTRG.31930.1	-	173363779,173369433,173369770	173364198,173369610,173369809	0.777778
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	73072186	73072210	73072209	-	High_confidence	4	5	17	0.733956	3.875000	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.823529
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	159428354	159428388	159428387	-	RAMPAGE_only	3	3	9	0.388565	2.947703	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159386373	159400650	BAZ2B|ENST00000294905.4	-	159386373,159389344,159395768,159397073,159397344,159398828,159400598	159386607,159389485,159395834,159397100,159397389,159398894,159400650	0.666667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	12800915	12801021	12800915	-	High_confidence	6	6	66	2.849477	5.046299	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.969697
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	137254953	137254969	137254968	-	High_confidence	5	5	16	0.690782	3.750000	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227363	137254976	MSTRG.38865.3	-	137227363,137251229,137253463,137254858	137228072,137251391,137253637,137254976	0.937500
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	21227164	21227186	21227164	-	RAMPAGE_only	3	4	10	0.431739	2.846439	chr1	21227023	21227146	SINE|Alu|AluJr4	-	chr1	21219813	21222081	ECE1|ENST00000531334.1	-	21219813,21221746	21220131,21222081	0.700000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr10	6737414	6737426	6737414	+	High_confidence	3	3	12	0.518087	3.084963	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.916667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	91462209	91462237	91462209	-	High_confidence	3	4	11	0.474913	2.913977	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	30445873	30445877	30445873	-	High_confidence	16	21	31	1.338390	4.438067	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	29280832	29280866	29280832	-	High_confidence	2	2	14	0.604434	3.334679	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	7913248	7913249	7913248	-	RAMPAGE_only	7	7	9	0.388565	2.500000	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7847611	7853491	UTS2|NM_021995.2	-	7847611,7849639,7850811,7852900,7853306	7847882,7849683,7850922,7852923,7853491	0.555556
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	104796052	104796088	104796052	-	RAMPAGE_only	5	5	12	0.518087	2.663533	chr9	104795349	104796003	LINE|L2|L2c	-	chr9	104781001	104928237	ABCA1|ENST00000374736.7	-	104781001,104785395,104786297,104786872,104787919,104788425,104790921,104791935,104792785,104793170,104794386,104796052,104796308,104798420,104799818,104800509,104802053,104803283,104804625,104806240,104809465,104810799,104812573,104814117,104814426,104816142,104817331,104818662,104819585,104819926,104821374,104822495,104824464,104825682,104826947,104828915,104830924,104831621,104832573,104836979,104837427,104840278,104845476,104858521,104861678,104883038,104884426,104889101,104903613,104927934	104784455,104785639,104786390,104786976,104788054,104788567,104791028,104791998,104792906,104793300,104794510,104796197,104796424,104798598,104799988,104800584,104802159,104803316,104804720,104806430,104809564,104810924,104812722,104814231,104814475,104816345,104817404,104818883,104819723,104820069,104821506,104822667,104824578,104825887,104827169,104829138,104831101,104831827,104832771,104837096,104837567,104840519,104845569,104858698,104861800,104883157,104884568,104889195,104903771,104928237	0.833333
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr15	82093996	82094078	82094031	+	RAMPAGE_only	36	36	325	14.031513	5.105743	chr15	82093781	82094459	DNA|TcMar-Tigger|Tigger7	+	chr15	82088632	82095707	LINC01583|ENST00000559788.1	+	82088632,82091726,82095481	82088728,82091935,82095707	0.923077
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	70590308	70590329	70590319	+	RAMPAGE_only	3	3	10	0.431739	2.725481	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.800000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	102431179	102431180	102431179	-	High_confidence	8	8	8	0.345391	3.000000	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.750000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	81664294	81664343	81664342	+	RAMPAGE_only	3	3	9	0.388565	2.725481	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	157487448	157487449	157487448	-	RAMPAGE_only	6	7	7	0.302217	2.584963	chr3	157486755	157488128	LINE|L1|L1ME3C	+	chr3	157460094	157489356	VEPH1|ENST00000482434.1	-	157460094,157470313,157489054	157460355,157470529,157489356	0.571429
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	238486001	238486035	238486008	-	High_confidence	3	3	14	0.604434	3.392747	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480383	238486017	LINC01139|NR_015407.1	-	238480383,238485784	238481681,238486017	0.785714
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr20	50172477	50172516	50172503	+	High_confidence	3	3	10	0.431739	2.921928	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172549	50173370	LINC01273|ENST00000427333.5	+	50172549,50172922,50173201	50172788,50173017,50173370	0.900000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	116390229	116390281	116390280	+	RAMPAGE_only	5	6	20	0.863478	3.284184	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	39810033	39810076	39810033	-	High_confidence	53	53	180	7.771300	5.841140	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.666667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	1655372	1655446	1655410	-	RAMPAGE_only	12	14	31	1.338390	4.348394	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1637991	1658972	MSTRG.180.9	-	1637991,1640276,1641047,1641661,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1638590,1640446,1641113,1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.548387
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr13	30743879	30743895	30743879	+	RAMPAGE_only	5	5	29	1.252043	4.282484	chr13	30743467	30743894	LINE|L2|L2c	+	chr13	30735507	30764426	ALOX5AP|ENST00000380490.4	+	30735507,30744059,30752051,30755943,30763943	30735675,30744159,30752122,30756025,30764426	0.896552
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	64985843	64985844	64985843	-	RAMPAGE_only	8	8	10	0.431739	3.169925	chr16	64985627	64985872	DNA|hAT-Charlie|MER20	+	chr16	64984695	64988334	CDH11|ENST00000619158.1	-	64984695	64988334	0.900000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	169812903	169812904	169812903	-	High_confidence	8	8	11	0.474913	3.095795	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.909091
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	182928789	182928824	182928789	-	RAMPAGE_only	3	4	15	0.647608	3.773557	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.666667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr22	28724885	28724886	28724885	-	High_confidence	13	13	13	0.561261	3.180833	chr22	28724569	28724864	SINE|Alu|AluSp	-	chr22	28699763	28725248	CHEK2|ENST00000439346.5	-	28699763,28703504,28710005,28711908,28724976,28725242	28699937,28703566,28710059,28712017,28725124,28725248	0.923077
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	108767922	108767938	108767934	+	RAMPAGE_only	5	5	18	0.777130	3.454822	chr11	108767811	108768278	DNA|TcMar-Tigger|Tigger2	+	chr11	108665121	108922243	DDX10|ENST00000526794.1	+	108665121,108673466,108675595,108677084,108678314,108679370,108688935,108691875,108693515,108706738,108715878,108719796,108722996,108838445,108841314,108852152,108917872	108665339,108673527,108675726,108677243,108678435,108679560,108689062,108692038,108693600,108706837,108715966,108719885,108723462,108838565,108841476,108852209,108922243	0.611111
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	12927708	12927756	12927733	+	High_confidence	29	29	96	4.144693	6.061807	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.645833
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	30523966	30523967	30523966	+	RAMPAGE_only	6	7	9	0.388565	2.503258	chr17	30522804	30524227	Retroposon|SVA|SVA_D	+	chr17	30477407	30526814	GOSR1|NM_001007024.1	+	30477407,30481142,30484213,30484662,30490125,30492678,30510879,30519938,30522253	30477486,30481257,30484301,30484770,30490217,30492753,30510909,30520021,30526814	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	39064912	39064924	39064912	-	RAMPAGE_only	3	3	8	0.345391	2.750000	chr14	39064766	39064897	SINE|Alu|FLAM_C	-	chr14	39031918	39088723	SEC23A|ENST00000537403.5	-	39031918,39039030,39040731,39042785,39045162,39048651,39055142,39061764,39063323,39064912,39067172,39074414,39075934,39085761,39086928,39087523	39033328,39039096,39040887,39042872,39045324,39048729,39055296,39061871,39063413,39064993,39067296,39074530,39076093,39085906,39087008,39088723	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr22	26512099	26512116	26512115	-	High_confidence	4	4	12	0.518087	2.913977	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	0.916667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	208251431	208251441	208251431	-	RAMPAGE_only	3	3	7	0.302217	2.584963	chr2	208251248	208251382	SINE|Alu|FLAM_A	-	chr2	208236226	208254303	IDH1|NM_001282387.1	-	208236226,208239070,208239862,208241993,208243426,208245318,208248368,208251429,208253885,208254030	208237169,208239233,208240003,208242145,208243604,208245424,208248660,208251567,208253959,208254303	0.857143
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	76564177	76564196	76564177	+	RAMPAGE_only	3	3	11	0.474913	3.277613	chr17	76564146	76564423	SINE|Alu|AluSx	-	chr17	76558462	76565279	MSTRG.18521.11	+	76558462,76558944,76561287,76563118	76558600,76559010,76561398,76565279	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	122074109	122074154	122074123	-	RAMPAGE_only	5	5	26	1.122521	4.251629	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065943	122076083	LOX|ENST00000505593.5	-	122065943,122070052,122070493,122074012,122075403,122076017	122066749,122070168,122070589,122074169,122075541,122076083	0.884615
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	152412480	152412529	152412480	-	High_confidence	2	2	9	0.388565	2.947703	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	103353930	103353940	103353930	+	High_confidence	3	3	11	0.474913	2.921928	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.727273
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	187565549	187565550	187565549	-	High_confidence	13	13	13	0.561261	3.238901	chr2	187565380	187565695	LTR|ERV1|HERVH-int	-	chr2	187496880	187565760	TFPI|ENST00000421427.5	-	187496880,187503647,187529363,187554199,187565549	187497078,187503770,187529485,187554349,187565760	0.846154
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr18	46087018	46087066	46087042	-	High_confidence	5	5	27	1.165695	4.563856	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.592593
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr6	43013451	43013479	43013478	-	High_confidence	3	4	8	0.345391	3.000000	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	65053813	65053855	65053854	-	RAMPAGE_only	8	15	41	1.770129	3.858612	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.853659
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr10	65570509	65570536	65570517	+	High_confidence	9	9	58	2.504085	5.396690	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr10	34405956	34405966	34405965	-	RAMPAGE_only	4	5	8	0.345391	2.500000	chr10	34405665	34405965	LTR|ERVL|LTR40b	-	chr10	34312263	34426731	PARD3|ENST00000544292.5	-	34312263,34317106,34331116,34336198,34337277,34341626,34347964,34359146,34360070,34374873,34377966,34382539,34384128,34399329,34401825,34426684	34312382,34317338,34331344,34336243,34337426,34341816,34348115,34359317,34360259,34375002,34378106,34382922,34384254,34399413,34401917,34426731	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	12635932	12635949	12635948	+	RAMPAGE_only	4	5	10	0.431739	2.721928	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	2757779	2757814	2757813	+	High_confidence	2	2	9	0.388565	2.750000	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.888889
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	81192622	81192661	81192644	-	RAMPAGE_only	4	4	12	0.518087	3.277613	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.916667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	29963577	29963578	29963577	+	High_confidence	9	11	12	0.518087	3.277613	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.833333
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	174825833	174825834	174825833	+	RAMPAGE_only	31	31	38	1.640608	4.807009	chr5	174825824	174825984	LTR|ERVL-MaLR|MLT1K	+	chr5	174820026	174826324	AC113346.1|ENST00000510150.1	+	174820026,174826121	174820110,174826324	0.578947
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	9065173	9065181	9065173	+	High_confidence	5	5	14	0.604434	3.392747	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.642857
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr13	93455164	93455183	93455182	+	RAMPAGE_only	5	5	10	0.431739	2.725481	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.600000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr22	36481305	36481346	36481345	-	High_confidence	13	13	56	2.417738	3.961335	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.785714
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr6	2990748	2990755	2990748	-	RAMPAGE_only	6	7	16	0.690782	3.149397	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.937500
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	25820158	25820193	25820192	+	High_confidence	5	6	23	0.992999	3.754442	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.826087
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	87040212	87040223	87040212	-	RAMPAGE_only	8	8	28	1.208869	4.450212	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.678571
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	50756987	50757005	50757004	-	RAMPAGE_only	4	4	9	0.388565	2.500000	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.888889
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	104280730	104280754	104280736	-	High_confidence	10	10	23	0.992999	4.011365	chr12	104280524	104280952	LTR|ERVL|MLT2D	+	chr12	104262313	104280722	AC089983.1|ENST00000549807.1	-	104262313,104280283	104262575,104280722	0.913043
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr8	43080033	43080034	43080033	+	RAMPAGE_only	4	4	6	0.259043	2.584963	chr8	43078293	43080600	DNA|TcMar-Tigger|Tigger1	+	chr8	43076646	43085780	FNTA|ENST00000525099.1	+	43076646,43084709,43085159	43083180,43084881,43085780	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	46850178	46850179	46850178	+	RAMPAGE_only	5	5	7	0.302217	2.521641	chr2	46850208	46850290	LINE|L2|L2a	+	chr2	46845875	46859006	LINC01119|ENST00000468141.2	+	46845875,46855922,46858079	46847037,46855990,46859006	0.571429
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	58455289	58455374	58455289	-	RAMPAGE_only	4	8	46	1.985999	4.909113	chr5	58455099	58455251	DNA|hAT-Charlie|MER5A	-	chr5	58453981	58460139	PLK2|NM_006622.3	-	58453981,58454910,58455284,58455538,58456025,58456491,58456944,58457180,58457487,58458083,58458398,58458724,58458984,58459689	58454774,58455021,58455414,58455779,58456155,58456589,58457092,58457379,58457583,58458171,58458528,58458841,58459092,58460139	0.978261
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	17282797	17282811	17282797	+	RAMPAGE_only	1	2	7	0.302217	2.584963	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277194	17331523	MSTRG.6250.16	+	17277194,17282788,17295323,17296103,17301743,17309571,17310824,17311192,17311871,17312027,17315385,17330126,17330901,17331411	17277297,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17331523	0.857143
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	58306086	58306124	58306086	+	High_confidence	4	4	10	0.431739	2.921928	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305373	58315202	ERVK3-1|ENST00000427361.5	+	58305373,58306087,58312196,58314747	58305445,58306216,58312462,58315202	0.900000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	34586235	34586236	34586235	-	RAMPAGE_only	7	8	10	0.431739	2.725481	chr14	34585901	34586200	SINE|Alu|AluSg	-	chr14	34561093	34630109	SNX6|ENST00000396526.7	-	34561093,34567685,34567853,34575755,34581560,34586229,34593044,34597549,34603347,34605595,34608029,34609637,34629906	34563175,34567771,34568013,34575842,34581600,34586305,34593150,34597645,34603471,34605717,34608140,34609742,34630109	0.900000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	38881696	38881744	38881696	+	RAMPAGE_only	8	9	44	1.899651	4.786503	chr5	38881676	38881753	SINE|tRNA-Deu|AmnSINE2	+	chr5	38845998	38935641	OSMR|ENST00000274276.7	+	38845998,38869031,38876200,38881592,38883826,38885348,38886038,38903881,38904352,38917545,38918839,38921614,38923149,38924421,38925203,38931882,38932462,38932871	38846387,38869117,38876373,38881764,38884111,38885484,38886190,38904024,38904503,38917622,38919062,38921794,38923254,38924595,38925371,38931964,38932535,38935641	0.954545
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	119525386	119525387	119525386	-	RAMPAGE_only	19	20	26	1.122521	4.213661	chr4	119525334	119525386	LINE|L2|L2c	+	chr4	119500822	119519099	PDE5A|ENST00000503412.1	-	119500822,119502580,119504535,119505854,119507603,119511046,119519044	119501253,119502655,119504599,119505932,119507704,119511134,119519099	0.653846
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	101217578	101217599	101217578	-	High_confidence	18	19	68	2.935824	5.062445	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.970588
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	81154213	81154222	81154221	-	High_confidence	14	14	27	1.165695	3.810081	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.925926
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	141629199	141629200	141629199	-	High_confidence	5	5	8	0.345391	2.500000	chr5	141628786	141629157	LINE|L2|L2a	-	chr5	141621484	141628562	HDAC3|ENST00000459727.5	-	141621484,141625207,141625684,141626193,141627892,141628113,141628558	141621537,141625365,141625764,141626283,141627957,141628187,141628562	0.750000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr22	37755650	37755658	37755650	+	RAMPAGE_only	3	4	8	0.345391	2.500000	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	0.750000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr10	104254263	104254264	104254263	+	High_confidence	7	7	11	0.474913	2.921928	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254193	104267464	GSTO1|NM_001191003.1	+	104254193,104255162,104259575,104262978,104266083,104267251	104254499,104255271,104259798,104263077,104266190,104267464	0.909091
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	15785371	15785372	15785371	+	RAMPAGE_only	4	4	6	0.259043	2.584963	chr1	15785352	15785645	SINE|Alu|AluSz6	+	chr1	15764963	15786589	FBLIM1|NM_001024216.1	+	15764963,15770408,15774617,15777169,15784547	15765233,15770578,15774796,15777287,15786589	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	8384046	8384064	8384046	-	High_confidence	2	2	10	0.431739	2.725481	chr17	8384033	8384050	SINE|Alu|AluSq	-	chr17	8377515	8383250	RPL26|ENST00000293842.10	-	8377515,8379795,8382142,8383156	8377692,8379936,8382315,8383250	0.900000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	41871712	41871820	41871819	-	RAMPAGE_only	4	4	32	1.381564	4.601410	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.687500
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr8	42188955	42189062	42188962	-	High_confidence	9	9	69	2.978998	5.119182	chr8	42188619	42188914	SINE|Alu|AluJo	-	chr8	42184694	42188489	PLAT|ENST00000521647.1	-	42184694,42187905	42187572,42188489	0.579710
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	150118746	150118780	150118746	-	RAMPAGE_only	2	2	11	0.474913	2.921928	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.909091
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr20	35307050	35307091	35307090	-	High_confidence	5	5	9	0.388565	2.725481	chr20	35306926	35307046	SINE|MIR|MIR3	-	chr20	35302565	35307082	UQCC1|ENST00000472559.5	-	35302565,35306665	35304069,35307082	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	175151094	175151134	175151133	-	High_confidence	4	4	14	0.604434	2.950212	chr2	175151128	175151379	DNA|hAT-Charlie|Charlie16a	-	chr2	175072264	175151082	ATF2|ENST00000409437.5	-	175072264,175080659,175093060,175097443,175111567,175117989,175118250,175121443,175130137,175132694,175136411,175151059	175074835,175080765,175093267,175097593,175111654,175118118,175118369,175121540,175130207,175132757,175136486,175151082	0.642857
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	49086546	49086547	49086546	+	High_confidence	5	5	8	0.345391	2.500000	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.625000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr18	46087105	46087144	46087105	-	High_confidence	4	5	27	1.165695	4.286790	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.666667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	128746429	128746439	128746429	-	High_confidence	24	25	50	2.158694	5.247363	chr2	128746345	128746703	LTR|ERVL|LTR42	-	chr2	128743261	128746437	MSTRG.23378.1	-	128743261,128746366	128745643,128746437	0.980000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	125123615	125123618	125123617	-	High_confidence	23	37	44	1.899651	4.908482	chr3	125123512	125123811	LTR|ERVL-MaLR|THE1B	-	chr3	125082643	125123599	MSTRG.28909.3	-	125082643,125088309,125091438,125092100,125107480,125110188,125118768,125120598,125123529	125084052,125088370,125091556,125092198,125108126,125110335,125118856,125120686,125123599	0.863636
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	11356864	11356882	11356872	+	High_confidence	2	3	10	0.431739	3.121928	chr19	11356842	11356927	SINE|MIR|MIRc	+	chr19	11357695	11359894	PLPPR2|ENST00000588196.1	+	11357695,11359531	11357739,11359894	0.900000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	45450734	45450766	45450765	-	High_confidence	6	6	26	1.122521	4.373661	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.576923
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	6507748	6507781	6507780	+	RAMPAGE_only	7	8	17	0.733956	3.750000	chr3	6507654	6507944	SINE|Alu|AluYi6	-	chr3	6490478	6736129	AC069277.1|ENST00000433639.1	+	6490478,6717568,6724449,6732270,6735661	6490672,6717667,6724546,6732495,6736129	0.705882
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	154287469	154287470	154287469	+	High_confidence	12	12	12	0.518087	3.084963	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	1880081	1880088	1880087	-	High_confidence	10	11	16	0.690782	2.999581	chr19	1880079	1880146	DNA|hAT-Ac|OldhAT1	+	chr19	1877203	1880017	ABHD17A|ENST00000592757.1	-	1877203,1877507,1878663,1879920	1877425,1877687,1878904,1880017	0.750000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	97904654	97904676	97904675	-	High_confidence	31	32	81	3.497085	5.650044	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97691206	97904664	MSTRG.2033.3	-	97691206,97699350,97720824,97721509,97740391,97828113,97883263,97904607	97691798,97699547,97720926,97721671,97740479,97828196,97883374,97904664	0.802469
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr20	50172544	50172595	50172544	+	High_confidence	5	6	28	1.208869	4.351823	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172549	50173370	LINC01273|ENST00000427333.5	+	50172549,50172922,50173201	50172788,50173017,50173370	0.535714
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	9986881	9986905	9986898	+	High_confidence	16	16	55	2.374564	5.339769	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.727273
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	55851351	55851368	55851367	+	High_confidence	7	7	56	2.417738	5.208868	chr5	55851124	55851720	DNA|TcMar-Tigger|Tigger17a	-	chr5	55851378	55909141	IL31RA|NM_001297570.1	+	55851378,55859508,55868790,55872269,55883043,55889969,55896349,55899915,55906105,55907358,55908264	55851633,55859599,55868908,55872451,55883195,55890135,55896429,55900132,55906288,55907460,55909141	0.821429
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	61472552	61472565	61472564	+	RAMPAGE_only	5	5	10	0.431739	2.921928	chr14	61472597	61472736	SINE|Alu|AluJb	+	chr14	61477166	61549946	PRKCH|ENST00000536400.5	+	61477166,61485501,61529074,61530406,61547742,61549684	61477245,61485656,61529213,61530595,61547886,61549946	0.700000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	17282859	17282905	17282895	+	RAMPAGE_only	3	3	13	0.561261	3.392747	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277194	17331523	MSTRG.6250.16	+	17277194,17282788,17295323,17296103,17301743,17309571,17310824,17311192,17311871,17312027,17315385,17330126,17330901,17331411	17277297,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17331523	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr21	33945809	33945810	33945809	-	RAMPAGE_only	12	12	12	0.518087	3.418296	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	231072206	231072248	231072247	+	RAMPAGE_only	4	4	17	0.733956	3.875000	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.941176
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	39499823	39499863	39499843	-	RAMPAGE_only	22	25	64	2.763129	3.481528	chr4	39499748	39499999	SINE|Alu|AluYk2	+	chr4	39498787	39526557	UGDH|ENST00000506179.5	-	39498787,39503874,39504416,39505236,39505617,39508565,39509759,39510352,39510660,39514082,39521350,39526383	39500253,39503985,39504508,39505370,39505748,39508660,39509907,39510550,39510861,39514184,39521519,39526557	0.984375
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	240022172	240022269	240022172	-	RAMPAGE_only	9	9	42	1.813303	3.210035	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.976190
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	20423697	20423704	20423703	-	RAMPAGE_only	6	6	11	0.474913	3.121928	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.636364
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	2838240	2838261	2838258	+	RAMPAGE_only	3	3	10	0.431739	3.321928	chr4	2838108	2838543	LINE|L1|L1ME3B	-	chr4	2843856	2930076	ADD1|NM_176801.2	+	2843856,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763,2907742,2908514,2914883,2926013,2926641,2928170	2844024,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905108,2907844,2908604,2915040,2926112,2926675,2930076	0.900000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	121582273	121582279	121582278	-	RAMPAGE_only	4	4	8	0.345391	2.750000	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121429095	121581015	KDM2B|NM_032590.4	-	121429095,121439856,121440815,121441069,121442156,121442991,121443679,121444011,121444449,121445274,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549459,121574546,121575780,121578801,121580785	121430469,121440075,121440977,121441233,121442836,121443030,121443793,121444272,121444536,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548983,121549638,121574593,121575859,121578946,121581015	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr10	32982549	32982592	32982580	+	High_confidence	2	2	10	0.431739	2.947703	chr10	32982518	32982768	SINE|Alu|AluSz6	-	chr10	32982540	33082102	ITGB1-DT|ENST00000414157.1	+	32982540,32985622,33081341	32982685,32985757,33082102	0.600000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	87042072	87042075	87042072	-	High_confidence	2	2	7	0.302217	2.584963	chr9	87041882	87047900	LINE|L1|L1PA3	+	chr9	87008450	87042126	LOC440173|NR_027471.1	-	87008450,87041870	87010210,87042126	0.571429
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	50230995	50230996	50230995	+	High_confidence	7	7	7	0.302217	2.807355	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	102020868	102020903	102020879	+	High_confidence	4	4	19	0.820304	3.721612	chr2	102020844	102021022	DNA|hAT-Charlie|MER5A	+	chr2	102020993	102028414	MSTRG.23060.8	+	102020993,102022186,102024532,102026110,102028225	102021253,102022249,102024668,102026253,102028414	0.947368
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	41380142	41380151	41380150	-	RAMPAGE_only	3	4	8	0.345391	2.807355	chr17	41379978	41380267	SINE|Alu|AluSc5	+	chr17	41377668	41382384	KRT34|NM_021013.3	-	41377668,41378955,41379352,41379569,41381055,41381712,41381898	41378146,41379176,41379478,41379731,41381212,41381795,41382384	0.875000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	39032900	39032942	39032900	-	High_confidence	4	4	16	0.690782	3.773557	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	38993734	39032922	TMEM156|ENST00000344606.6	-	38993734,38998723,39032225,39032641	38993998,38998909,39032443,39032922	0.812500
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	150572488	150572528	150572526	+	RAMPAGE_only	3	6	14	0.604434	3.182006	chr3	150572572	150572872	SINE|Alu|AluSz	+	chr3	150568031	150584234	EIF2A|ENST00000465535.1	+	150568031,150568175,150571957,150575648,150583199,150583845	150568046,150568292,150572529,150575762,150583265,150584234	0.642857
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	11225963	11226026	11226025	+	High_confidence	6	7	21	0.906652	4.201841	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11225982	11263253	HRH1|NM_001098211.1	+	11225982,11259002	11226059,11263253	0.523810
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	54413473	54413493	54413473	-	RAMPAGE_only	6	7	21	0.906652	3.975418	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54226631	54406419	SSBP3|ENST00000371320.7	-	54226631,54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54257126,54258068,54281437,54401860,54404575,54404857,54405952	54227160,54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257186,54258149,54281527,54401945,54404637,54404930,54406419	0.714286
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	20658585	20658608	20658597	+	High_confidence	3	3	11	0.474913	3.121928	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.545455
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	128684454	128684483	128684482	-	RAMPAGE_only	5	5	28	1.208869	3.692381	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.892857
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr6	26474333	26474346	26474345	+	RAMPAGE_only	7	7	32	1.381564	4.438067	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.906250
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	153549077	153549147	153549128	-	High_confidence	4	4	25	1.079347	4.293661	chr1	153549066	153549188	SINE|MIR|MIRb	+	chr1	153547512	153549126	S100A3|ENST00000368712.1	-	153547512,153548344,153549027	153547846,153548490,153549126	0.760000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	4129116	4129136	4129133	+	RAMPAGE_only	3	3	13	0.561261	3.418296	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.923077
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	93773408	93773412	93773411	+	RAMPAGE_only	10	11	17	0.733956	3.807764	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.882353
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	109053956	109053957	109053956	-	High_confidence	12	13	14	0.604434	3.235926	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	134527596	134527597	134527596	+	High_confidence	70	70	73	3.151694	5.593429	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.958904
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chrX	147937574	147937599	147937598	+	RAMPAGE_only	3	3	11	0.474913	2.913977	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	MSTRG.44003.19	+	147940580,147943130,147944904,147945533,147948682	147940662,147943326,147945051,147945616,147950315	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	128082243	128082252	128082251	-	High_confidence	4	4	11	0.474913	3.321928	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127965887	128082974	LINC01184|ENST00000501652.5	-	127965887,128061143,128081972,128082734	127966928,128061244,128082191,128082974	0.727273
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	99410034	99410050	99410041	+	High_confidence	3	3	8	0.345391	2.807355	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr6	130894344	130894377	130894344	-	RAMPAGE_only	3	3	12	0.518087	3.277613	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	0.833333
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	51153819	51153853	51153837	+	High_confidence	4	4	13	0.561261	3.026987	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51154043	51155759	NME1|ENST00000456492.1	+	51154043,51155650	51154444,51155759	0.615385
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	6208681	6208682	6208681	-	High_confidence	149	149	152	6.562431	3.667448	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.967105
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr13	111337431	111337461	111337431	+	RAMPAGE_only	2	2	8	0.345391	2.521641	chr13	111337198	111337649	LTR|ERVL-MaLR|MLT1F	-	chr13	111316184	111344247	TEX29|NM_001303133.1	+	111316184,111320856,111328182,111339293,111339862,111342755,111344082	111316257,111320948,111328293,111339438,111339932,111342931,111344247	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	111097312	111097352	111097319	-	High_confidence	16	18	108	4.662780	5.006110	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.962963
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr8	143039246	143039285	143039266	+	High_confidence	11	15	58	2.504085	4.812650	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.810345
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	46903799	46903850	46903849	-	RAMPAGE_only	5	6	19	0.820304	3.836592	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.947368
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr20	37297344	37297345	37297344	+	High_confidence	10	10	10	0.431739	3.121928	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	45524130	45524142	45524130	+	RAMPAGE_only	4	4	13	0.561261	3.546594	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.769231
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chrX	16712889	16712933	16712889	-	High_confidence	4	4	31	1.338390	4.324849	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	139344537	139344548	139344547	+	High_confidence	177	177	391	16.880990	5.797397	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.966752
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	64226142	64226180	64226142	-	High_confidence	131	132	875	37.777151	7.211337	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64224202	64226148	TRPT1|ENST00000545812.1	-	64224202,64224284,64224542,64224794,64225498,64225785,64226049	64224210,64224341,64224717,64224970,64225580,64225869,64226148	0.557714
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	48868595	48868631	48868613	-	High_confidence	496	559	2087	90.103902	7.612248	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.989459
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	21360450	21360466	21360450	-	RAMPAGE_only	1	1	7	0.302217	2.584963	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351478	21358402	SUPT16H|ENST00000557394.5	-	21351478,21353487,21353702,21354410,21357196,21357926	21352818,21353565,21353832,21354540,21357366,21358402	0.571429
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	64773441	64773491	64773482	-	RAMPAGE_only	3	3	14	0.604434	2.815072	chr11	64773369	64773442	LINE|RTE-BovB|MamRTE1	-	chr11	64769277	64770639	SF1|ENST00000486960.5	-	64769277,64769425,64769963,64770255	64769338,64769609,64770053,64770639	0.857143
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	54759973	54759974	54759973	-	High_confidence	8	8	11	0.474913	2.721928	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.909091
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	125538262	125538283	125538282	+	High_confidence	22	22	33	1.424738	4.202820	chr9	125538091	125538491	LINE|L2|L2	-	chr9	125538291	125541488	MSTRG.42422.1	+	125538291,125541134	125538364,125541488	0.787879
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	134432378	134432458	134432378	-	High_confidence	14	14	74	3.194868	4.967423	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.689189
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chrX	19349942	19349964	19349963	+	RAMPAGE_only	3	3	7	0.302217	2.807355	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19355317	19359025	PDHA1|ENST00000481733.1	+	19355317,19355685,19357651,19358915	19355504,19355757,19357719,19359025	0.714286
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	62376790	62376829	62376790	-	High_confidence	6	6	41	1.770129	3.905308	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.853659
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	31697910	31697933	31697910	-	High_confidence	6	6	12	0.518087	3.251629	chr1	31697333	31697861	LINE|L2|L2c	-	chr1	31688860	31697010	COL16A1|ENST00000373667.4	-	31688860,31689049,31689740,31690366,31690528,31691187,31691416,31691597,31692004,31692473,31692597,31692766,31693091,31695185,31695760,31696087,31696962	31688971,31689085,31689851,31690393,31690573,31691226,31691512,31691642,31692067,31692509,31692642,31692808,31693154,31695221,31695787,31696141,31697010	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	58578102	58578168	58578132	-	High_confidence	13	25	76	3.281215	5.502807	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.776316
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chrX	115648000	115648003	115648000	+	RAMPAGE_only	3	4	9	0.388565	2.750000	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.888889
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	83096150	83096153	83096150	+	RAMPAGE_only	10	10	17	0.733956	3.577820	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	0.882353
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	176943338	176943372	176943338	-	RAMPAGE_only	4	4	14	0.604434	3.238901	chr5	176943235	176943320	DNA|hAT-Charlie|Charlie10	-	chr5	176905065	176970793	UIMC1|ENST00000510698.2	-	176905065,176906010,176907113,176908522,176911310,176943334,176951473,176955958,176958092,176969600,176970741	176905492,176906047,176907177,176908694,176911389,176943488,176951577,176956035,176958154,176969706,176970793	0.928571
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	94061493	94061499	94061498	+	High_confidence	12	12	22	0.949826	4.061482	chr7	94061392	94061581	SINE|MIR|MIRc	-	chr7	94061140	94066661	AC003092.1|ENST00000438538.1	+	94061140,94061455,94061768,94064425,94066366	94061270,94061625,94061864,94064477,94066661	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr15	82093492	82093493	82093492	+	RAMPAGE_only	7	7	7	0.302217	2.521641	chr15	82093373	82093640	LTR|ERVL-MaLR|MLT1A0	-	chr15	82088632	82095707	LINC01583|ENST00000559788.1	+	82088632,82091726,82095481	82088728,82091935,82095707	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	179269465	179269466	179269465	-	RAMPAGE_only	12	15	15	0.647608	3.272906	chr5	179269301	179269658	LTR|ERVL-MaLR|THE1B	-	chr5	179110850	179345430	ADAMTS2|NM_014244.4	-	179110850,179121660,179122643,179124972,179125997,179127958,179129931,179132229,179132776,179135908,179137768,179139889,179152141,179153490,179154048,179154813,179158722,179181071,179207512,179272910,179343766,179345189	179114324,179121750,179122773,179125180,179126130,179128118,179130098,179132310,179132900,179136042,179137944,179140035,179152255,179153623,179154192,179154919,179158879,179181155,179207715,179273064,179344161,179345430	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	67912349	67912419	67912349	+	RAMPAGE_only	3	3	22	0.949826	3.921928	chr17	67912300	67912367	LINE|RTE-BovB|MamRTE1	-	chr17	67826141	67982288	BPTF|ENST00000424123.7	+	67826141,67853939,67866463,67874816,67875555,67886127,67891843,67893369,67894033,67903788,67904701,67909581,67910876,67918713,67920014,67922839,67924546,67928354,67929335,67931910,67940438,67944149,67945408,67947725,67948080,67959540,67964211,67966571,67975771,67982251	67826337,67854762,67866687,67875020,67875744,67886316,67892034,67893725,67894165,67903918,67904840,67909761,67913187,67918838,67920143,67922990,67924589,67928601,67929487,67932019,67940656,67944372,67945896,67947808,67948306,67959875,67964404,67966656,67975958,67982288	0.909091
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr10	102449836	102449839	102449836	+	High_confidence	11	11	18	0.777130	3.219528	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.888889
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr22	50756949	50756950	50756949	+	High_confidence	10	10	12	0.518087	3.251629	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.833333
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr6	28335913	28335921	28335915	-	High_confidence	6	8	15	0.647608	3.664498	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.733333
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	38789812	38789839	38789812	-	RAMPAGE_only	8	8	16	0.690782	3.327820	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	55982757	55982800	55982757	-	High_confidence	7	8	29	1.252043	4.593069	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.931034
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	6205508	6205540	6205508	+	High_confidence	2	2	10	0.431739	2.921928	chr1	6205476	6205750	SINE|Alu|AluSz	-	chr1	6205474	6208307	RNF207|ENST00000466994.5	+	6205474,6206195,6206535,6207378	6206101,6206302,6206726,6208307	0.800000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr10	103181328	103181329	103181328	-	RAMPAGE_only	11	11	12	0.518087	3.095795	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr10	97715468	97715470	97715469	+	RAMPAGE_only	5	9	14	0.604434	3.392747	chr10	97715446	97715562	DNA|hAT-Charlie|MER103C	-	chr10	97713723	97718152	MARVELD1|ENST00000285605.7	+	97713723,97717193	97715985,97718152	0.928571
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	141332616	141332617	141332616	-	High_confidence	13	13	13	0.561261	3.026987	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	15256235	15256236	15256235	-	RAMPAGE_only	47	47	59	2.547259	3.892235	chr19	15256082	15256220	LINE|L1|L1M5	-	chr19	15235518	15280451	BRD4|ENST00000263377.6	-	15235518,15238742,15239058,15239391,15239658,15239909,15242899,15244230,15244709,15254151,15255296,15256063,15256963,15263419,15264403,15265353,15267415,15268904,15272814,15280263	15238445,15238980,15239264,15239522,15239821,15240022,15243487,15244600,15244762,15254262,15255592,15256263,15257173,15263548,15264766,15265643,15267551,15269042,15273133,15280451	0.983051
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	643627	643642	643635	-	High_confidence	11	11	27	1.165695	3.825252	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.962963
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr6	129586980	129586987	129586980	-	RAMPAGE_only	2	2	7	0.302217	2.584963	chr6	129586832	129587035	LINE|L2|L2c	+	chr6	129578418	129596875	ARHGAP18|ENST00000483367.5	-	129578418,129580069,129583987,129596788	129578604,129580131,129584112,129596875	0.571429
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	139364711	139364720	139364719	+	RAMPAGE_only	4	6	14	0.604434	3.334679	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.571429
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	44304782	44304813	44304782	-	High_confidence	2	2	12	0.518087	3.251629	chr19	44304575	44304734	SINE|MIR|MIR	-	chr19	44288804	44304968	ZNF235|ENST00000591609.1	-	44288804,44298807,44299605,44303389,44304700	44289196,44298903,44299732,44303452,44304968	0.750000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	73366938	73366984	73366983	-	High_confidence	2	2	7	0.302217	2.807355	chr14	73366875	73367023	SINE|MIR|MIRb	+	chr14	73276548	73366920	NUMB|ENST00000560335.5	-	73276548,73282358,73287109,73292733,73297210,73316389,73323129,73355625,73366896	73277293,73282505,73287314,73292874,73297285,73316422,73323204,73355766,73366920	0.857143
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr15	89588158	89588168	89588167	+	RAMPAGE_only	5	5	9	0.388565	2.725481	chr15	89586398	89589443	LINE|L2|L2a	-	chr15	89575586	89628012	TICRR|ENST00000560985.5	+	89575586,89582685,89584288,89585707,89592046,89594414,89595392,89599323,89600584,89601297,89601488,89601736,89602795,89606767,89608802,89616404,89618151,89619707,89621392,89623622,89625935,89626955	89576240,89582965,89584527,89585942,89592176,89594554,89595611,89599475,89600685,89601391,89601568,89601976,89602892,89606825,89608949,89616495,89618210,89619842,89621550,89625786,89626061,89628012	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr22	27920124	27920134	27920133	-	High_confidence	3	4	8	0.345391	2.521641	chr22	27919974	27920411	LINE|L2|L2b	-	chr22	27860195	27920134	PITPNB|ENST00000415296.5	-	27860195,27873737,27894554,27896551,27897129,27897800,27910963,27914316,27919810	27860241,27873815,27894638,27896626,27897137,27897892,27911109,27914347,27920134	0.875000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr13	52661481	52661498	52661497	+	RAMPAGE_only	2	2	7	0.302217	2.584963	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	0.857143
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	200888617	200888629	200888617	-	High_confidence	7	7	23	0.992999	3.083587	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.913043
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	181954451	181954492	181954491	+	High_confidence	6	6	26	1.122521	3.823935	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.884615
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	160392298	160392299	160392298	-	RAMPAGE_only	4	4	7	0.302217	2.584963	chr2	160392258	160392467	DNA|hAT-Charlie|MER58A	+	chr2	160274539	160407882	MSTRG.23709.14	-	160274539,160275629,160277302,160278547,160281313,160284774,160284994,160286968,160300650,160303329,160313155,160318168,160367215,160407463	160274764,160275714,160277383,160278658,160281364,160284868,160285044,160287084,160300730,160303487,160313247,160318227,160367388,160407882	0.857143
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr6	133952656	133952693	133952692	+	High_confidence	3	3	8	0.345391	2.750000	chr6	133952660	133952828	DNA|hAT-Charlie|Charlie2a	+	chr6	133953162	133987500	TBPL1|NM_004865.3	+	133953162,133980081,133982567,133982816,133984375,133984576,133986960	133953425,133980260,133982650,133982880,133984479,133984671,133987500	0.750000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	997305	997328	997305	-	High_confidence	10	10	42	1.813303	4.773270	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	18938738	18938761	18938738	-	High_confidence	2	2	10	0.431739	2.725481	chr19	18938564	18938695	SINE|MIR|MIR3	-	chr19	18929202	18939049	HOMER3|ENST00000221222.15	-	18929202,18931324,18931508,18931975,18932923,18934302,18938352,18938727,18938968	18929625,18931411,18931625,18932132,18933045,18934410,18938484,18938884,18939049	0.900000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr15	67067764	67067785	67067784	+	RAMPAGE_only	5	6	13	0.561261	3.251629	chr15	67067830	67067863	SINE|MIR|MIR3	+	chr15	67065856	67195195	SMAD3|NM_005902.3	+	67065856,67164894,67165252,67166778,67170553,67181240,67184726,67187364,67190412	67066360,67165088,67165384,67166853,67170604,67181453,67184864,67187509,67195195	0.923077
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	19386333	19386450	19386334	-	High_confidence	69	110	231	9.973168	6.270393	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.987013
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	50271485	50271486	50271485	+	High_confidence	11	11	12	0.518087	3.095795	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	0.916667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	123061165	123061323	123061296	-	High_confidence	108	109	561	24.220551	6.185502	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.966132
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	11196140	11196163	11196140	-	High_confidence	14	14	32	1.381564	3.816428	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.937500
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr6	43025307	43025319	43025307	+	High_confidence	9	9	16	0.690782	3.625000	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.562500
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	74449092	74449231	74449135	+	RAMPAGE_only	22	25	171	7.382735	5.914508	chr4	74449070	74449168	LINE|L1|L1MEf	+	chr4	74445301	74455005	AREG|ENST00000502307.1	+	74445301,74446533,74449046,74450379,74454758	74445406,74446782,74449248,74450532,74455005	0.608187
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	571725	571771	571754	-	High_confidence	16	32	79	3.410737	5.420560	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.810127
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	222064772	222064773	222064772	-	High_confidence	12	13	13	0.561261	2.625815	chr1	222064600	222064953	LTR|ERVL-MaLR|THE1B	-	chr1	222041704	222064763	LINC01705|ENST00000438158.1	-	222041704,222058413,222064684	222041922,222058678,222064763	0.923077
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	49994140	49994156	49994155	-	RAMPAGE_only	4	6	10	0.431739	2.947703	chr12	49994071	49994113	LINE|L2|L2b	-	chr12	49976922	49992358	RACGAP1|ENST00000548961.5	-	49976922,49991997,49992244	49977059,49992133,49992358	0.700000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	70401420	70401526	70401450	+	RAMPAGE_only	5	5	67	2.892650	4.918580	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.970149
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr6	107872870	107872888	107872878	-	RAMPAGE_only	3	3	10	0.431739	2.725481	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.900000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	179527782	179527813	179527782	-	RAMPAGE_only	6	7	56	2.417738	4.986188	chr3	179527648	179527777	LTR|ERV1|LTR37B	-	chr3	179396088	179451590	GNB4|ENST00000232564.7	-	179396088,179405189,179413411,179413714,179414884,179416492,179419398,179420888,179426143,179451345	179401319,179405406,179413613,179413781,179415047,179416556,179419505,179420927,179426242,179451590	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	101308293	101308325	101308299	+	High_confidence	16	21	59	2.547259	5.280782	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.966102
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	28347653	28347667	28347653	-	High_confidence	22	22	46	1.985999	5.036616	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.760870
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	99906545	99906574	99906545	-	High_confidence	2	2	7	0.302217	2.807355	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr20	3795750	3795789	3795788	+	High_confidence	28	29	158	6.821474	5.938273	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.987342
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	91179462	91179549	91179525	-	High_confidence	1152	1577	7263	313.571940	7.240135	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91145258	91179582	DCN|ENST00000393155.5	-	91145258,91151653,91153095,91157074,91158295,91164604,91178341,91179361	91146252,91151792,91153189,91157188,91158509,91164717,91178585,91179582	0.977557
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	119046603	119046625	119046604	-	RAMPAGE_only	10	13	26	1.122521	3.859471	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057105	MSTRG.7864.9	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049017,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119057019	119045654,119045834,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049203,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119057105	0.961538
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	72111493	72111496	72111493	-	High_confidence	2	3	7	0.302217	2.521641	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	77723180	77723236	77723180	-	RAMPAGE_only	8	8	22	0.949826	4.221928	chr14	77722838	77723146	SINE|Alu|AluY	-	chr14	77717598	77761154	SNW1|NM_012245.2	-	77717598,77718366,77720710,77723180,77730987,77732484,77734946,77735936,77736970,77738777,77738965,77751318,77754966,77761113	77718286,77718530,77720828,77723277,77731129,77732601,77735012,77736006,77737075,77738884,77739061,77751480,77755120,77761154	0.909091
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	4143196	4143215	4143199	+	High_confidence	155	165	370	15.974338	6.011989	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.991892
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	86453161	86453207	86453202	-	High_confidence	10	11	87	3.756128	5.254003	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.896552
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	54200557	54200558	54200557	+	High_confidence	11	11	12	0.518087	2.913977	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200195	54225464	MRPL37|ENST00000605337.5	+	54200195,54205017,54205294,54209945,54212500,54216140,54225124	54200589,54205201,54205410,54210131,54212658,54216344,54225464	0.833333
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	6200614	6200647	6200614	-	High_confidence	7	7	23	0.992999	3.082328	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.913043
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr20	18794077	18794086	18794077	+	High_confidence	9	9	20	0.863478	3.584184	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	66408512	66408539	66408519	+	High_confidence	6	6	24	1.036173	4.501629	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.958333
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	151661909	151662491	151661909	-	RAMPAGE_only	96	99	898	38.770150	6.839466	chr5	151661901	151662129	LINE|L2|L2a	+	chr5	151661095	151687054	SPARC|NM_001309444.1	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663597,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687054	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	61463050	61463090	61463050	+	High_confidence	4	4	14	0.604434	3.238901	chr14	61463043	61463245	SINE|MIR|MIRb	+	chr14	61463068	61529209	PRKCH|ENST00000555233.5	+	61463068,61485501,61529074	61463360,61485656,61529209	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chrX	11351675	11351687	11351675	-	RAMPAGE_only	3	3	6	0.259043	2.584963	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.666667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chrX	16023354	16023381	16023360	+	High_confidence	9	9	37	1.597434	4.173417	chrX	16023377	16023944	LTR|ERVL-MaLR|MLT1E1	+	chrX	16023411	16171464	MSTRG.42901.1	+	16023411,16150304,16152255,16167481,16170333	16023870,16150656,16152635,16167783,16171464	0.972973
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	168138416	168138489	168138463	+	High_confidence	24	25	99	4.274215	5.889002	chr4	168138456	168139278	LINE|L1|L1P4	-	chr4	168138377	168187690	MSTRG.31886.2	+	168138377,168139485,168162527,168164197,168165246,168177739,168177889,168179216,168181682,168184558,168187365	168138519,168139580,168162641,168164288,168165326,168177793,168177983,168179312,168181741,168184681,168187690	0.959596
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	43694081	43694140	43694122	-	RAMPAGE_only	9	9	39	1.683782	3.882093	chr7	43693084	43695551	LINE|L2|L2a	+	chr7	43609232	43729483	COA1|ENST00000446564.5	-	43609232,43639448,43640572,43645250,43647534,43648599,43650611,43729428	43609641,43639681,43640649,43645399,43647634,43648652,43650712,43729483	0.794872
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	54296683	54296763	54296710	+	RAMPAGE_only	11	12	90	3.885650	5.012045	chr4	54296613	54296722	DNA|hAT-Charlie|MER5B	-	chr4	54229096	54298247	PDGFRA|ENST00000257290.9	+	54229096,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54280315,54285370,54285840,54287429,54288798,54289008,54290312,54295124	54229415,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54280482,54285486,54285963,54287541,54288898,54289114,54290554,54298247	0.955556
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr8	57746128	57746129	57746128	+	High_confidence	17	17	17	0.733956	2.542483	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	102235451	102235459	102235458	-	High_confidence	10	11	21	0.906652	3.884184	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.857143
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	129489063	129489131	129489125	+	High_confidence	18	21	42	1.813303	4.803056	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.809524
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	50226714	50226728	50226727	+	High_confidence	16	24	48	2.072347	4.815123	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	0.958333
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	62897400	62897441	62897430	+	High_confidence	16	16	38	1.640608	4.826875	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.842105
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr15	98890528	98890529	98890528	+	High_confidence	28	32	39	1.683782	4.810673	chr15	98890160	98890677	LTR|ERV1|MER41A	+	chr15	98890541	98911398	MSTRG.14803.15	+	98890541,98891324,98896756,98899476,98908684,98911314	98890755,98891637,98896905,98899621,98908899,98911398	0.769231
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	16981087	16981104	16981103	-	High_confidence	3	3	11	0.474913	2.646439	chr1	16980989	16981106	LINE|L2|L2b	+	chr1	16974501	16980835	MFAP2|ENST00000375535.3	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16980586	16975023,16975342,16975730,16976545,16976794,16976923,16977198,16978314,16980835	0.909091
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	23939329	23939337	23939329	+	RAMPAGE_only	6	6	16	0.690782	3.139572	chr2	23939241	23939827	LTR|ERV1|MER92B	-	chr2	23927311	24000203	UBXN2A|ENST00000404924.5	+	23927311,23939539,23958300,23971275,23976968,23982895,23984672,23999671	23927615,23939662,23958355,23971414,23977075,23983033,23984831,24000203	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	46413540	46413612	46413611	-	High_confidence	73	75	455	19.644119	6.423995	chr19	46413579	46413731	LTR|Gypsy|LTR104_Mam	-	chr19	46410378	46413564	CCDC8|ENST00000307522.4	-	46410378	46413564	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	89681504	89681508	89681504	+	RAMPAGE_only	5	6	9	0.388565	2.725481	chr4	89681260	89681677	LTR|ERV1|MER61C	+	chr4	89627783	89720172	AC097478.1|ENST00000507916.6	+	89627783,89691284,89719825	89627917,89691405,89720172	0.555556
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	51554682	51554696	51554695	+	RAMPAGE_only	13	13	27	1.165695	4.403856	chr14	51553917	51555014	LINE|L1|L1MC3	+	chr14	51489136	51730459	FRMD6|ENST00000356218.8	+	51489136,51570347,51689690,51698141,51701055,51702511,51704748,51708077,51711530,51712482,51715324,51720054,51721948,51725778,51727744	51489420,51570410,51689935,51698232,51701135,51702588,51704935,51708233,51711596,51712551,51715499,51720390,51722080,51725870,51730459	0.518519
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr15	55371793	55371825	55371793	-	RAMPAGE_only	3	3	11	0.474913	2.721928	chr15	55371592	55371758	SINE|MIR|MIRb	-	chr15	55358838	55372952	CCPG1|ENST00000568372.5	-	55358838,55365187,55371792	55360944,55365309,55372952	0.909091
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	134485387	134485471	134485443	-	High_confidence	27	29	156	6.735126	6.194209	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.961538
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr15	80059915	80059933	80059918	+	High_confidence	44	47	132	5.698953	5.138586	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.984848
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	43508342	43508343	43508342	+	RAMPAGE_only	9	9	12	0.518087	3.418296	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	11225913	11225939	11225938	-	High_confidence	4	5	13	0.561261	3.238901	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.923077
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	107580245	107580267	107580264	+	High_confidence	600	602	2998	129.435313	6.973453	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.928953
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	56157286	56157349	56157286	+	High_confidence	4	4	27	1.165695	3.350586	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.925926
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	11774341	11774342	11774341	-	High_confidence	8	9	9	0.388565	2.750000	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	0.777778
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	116327892	116327914	116327911	-	RAMPAGE_only	28	31	88	3.799302	5.869951	chr7	116327809	116328061	SINE|MIR|MIRb	-	chr7	116275605	116286727	LOC102724434|NR_130922.1	-	116275605,116284367,116286111,116286698	116277432,116284406,116286195,116286727	0.784091
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	93504673	93504674	93504673	-	RAMPAGE_only	11	11	11	0.474913	3.095795	chr5	93504513	93504869	LTR|ERVL-MaLR|THE1A	-	chr5	93411017	93438737	NR2F1-AS1|ENST00000606188.1	-	93411017,93438702	93411509,93438737	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr15	65577059	65577241	65577240	+	RAMPAGE_only	16	16	109	4.705954	5.247196	chr15	65577153	65577426	SINE|Alu|AluJr	+	chr15	65530488	65578355	HACD3|NM_016395.2	+	65530488,65551675,65554886,65556738,65558679,65562773,65564214,65570090,65571547,65572234,65576302	65530718,65551718,65554960,65556903,65558731,65562884,65564342,65570203,65571654,65572366,65578355	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	128104807	128104851	128104850	-	RAMPAGE_only	3	3	13	0.561261	3.700440	chr3	128104760	128104822	LINE|CR1|L3	-	chr3	128064781	128101619	RUVBL1|ENST00000472125.5	-	128064781,128097299,128098881,128100594,128101558	128065220,128097498,128098945,128100744,128101619	0.615385
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	43525091	43525092	43525091	+	High_confidence	30	30	36	1.554260	4.947703	chr1	43524527	43525317	LINE|L2|L2c	-	chr1	43525186	43553519	PTPRF|ENST00000496043.5	+	43525186,43528656,43538197,43545030,43553491	43525257,43528756,43538277,43545166,43553519	0.750000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chrX	154542227	154542240	154542239	+	High_confidence	3	3	9	0.388565	2.641604	chrX	154542235	154542311	SINE|MIR|MIR3	-	chrX	154542239	154565046	IKBKG|NM_001321396.1	+	154542239,154551987,154556164,154558531,154560406,154561687,154562809,154563558,154563958,154564318	154542387,154552189,154556376,154558650,154560559,154561784,154562953,154563701,154564020,154565046	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	106285249	106285262	106285258	+	High_confidence	12	13	38	1.640608	4.576618	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106285479	106286326	AC007032.1|ENST00000609281.1	+	106285479	106286326	0.973684
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	43881136	43881167	43881166	+	High_confidence	4	4	8	0.345391	2.750000	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.875000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	12528297	12528301	12528297	+	RAMPAGE_only	2	3	8	0.345391	2.521641	chr11	12528254	12528421	SINE|MIR|MIRb	-	chr11	12377478	12535356	PARVA|ENST00000649199.1	+	12377478,12473744,12473912,12477846,12496457,12504313,12508583,12511513,12513298,12513996,12517609,12518444,12527848	12377783,12473834,12473983,12477949,12496598,12504429,12508642,12511533,12513360,12514065,12517711,12518517,12535356	0.875000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	110642789	110642790	110642789	-	High_confidence	28	28	28	1.208869	4.450212	chr2	110642693	110642986	SINE|Alu|AluJr	-	chr2	110641325	110642790	BUB1|ENST00000478175.1	-	110641325,110641641,110642118,110642448	110641464,110641803,110642234,110642790	0.928571
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	151166647	151166686	151166679	+	High_confidence	15	15	43	1.856477	4.766968	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	0.976744
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	12572757	12572769	12572757	-	RAMPAGE_only	4	6	15	0.647608	3.521641	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.866667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr8	106060523	106060539	106060533	-	High_confidence	2	3	8	0.345391	2.807355	chr8	106060473	106060807	LTR|ERVL|LTR18A	+	chr8	105796939	106060443	ZFPM2-AS1|ENST00000509144.2	-	105796939,105798324,105927641,106060380	105797224,105798442,105927717,106060443	0.625000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr18	80148048	80148049	80148048	+	High_confidence	7	7	8	0.345391	2.807355	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.625000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	1659356	1659379	1659356	-	RAMPAGE_only	10	10	17	0.733956	3.852169	chr17	1659014	1659325	SINE|Alu|AluSx3	-	chr17	1650630	1684837	PRPF8|ENST00000572621.5	-	1650630,1651107,1651413,1651647,1653541,1653776,1655349,1656391,1656647,1658252,1658525,1659356,1659840,1660431,1660697,1660992,1661270,1661610,1661905,1673080,1673356,1673745,1674441,1675151,1675619,1675927,1676206,1676504,1676975,1677564,1678517,1678761,1679016,1679290,1679608,1680725,1680928,1681477,1681819,1682128,1683532,1684471	1650956,1651310,1651553,1651788,1653683,1654016,1655543,1656565,1656761,1658381,1658763,1659548,1660001,1660578,1660827,1661162,1661406,1661790,1662153,1673197,1673567,1673892,1674680,1675339,1675812,1676054,1676370,1676711,1677172,1677694,1678652,1678881,1679206,1679410,1679799,1680831,1681054,1681690,1682038,1682293,1683701,1684837	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr21	44962753	44962765	44962764	+	RAMPAGE_only	4	4	14	0.604434	3.521641	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44958245	44976973	FAM207A|ENST00000479127.5	+	44958245,44960099,44967033,44973196,44976679	44958424,44960168,44967181,44973265,44976973	0.928571
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	229586885	229586906	229586885	-	High_confidence	3	4	10	0.431739	2.846439	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229580153	229587177	DNER|ENST00000482831.1	-	229580153,229585857,229586693	229580344,229586024,229587177	0.600000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	33068834	33068879	33068834	-	RAMPAGE_only	6	8	22	0.949826	3.684184	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.863636
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr21	36005313	36005320	36005319	+	High_confidence	20	20	38	1.640608	4.593400	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.842105
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	121950281	121950292	121950291	+	RAMPAGE_only	14	14	24	1.036173	3.410099	chr12	121949929	121950482	LINE|L1|L1MB5	+	chr12	121952694	121959739	WDR66|ENST00000535257.1	+	121952694,121957073,121958271,121958942	121954334,121957268,121958522,121959739	0.958333
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	129488843	129488905	129488856	+	High_confidence	29	29	110	4.749128	5.116874	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.890909
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	60887070	60887094	60887070	+	High_confidence	2	2	6	0.259043	2.584963	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr20	37298760	37298761	37298760	+	RAMPAGE_only	19	19	20	0.863478	3.826875	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.950000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr18	54945458	54945460	54945458	-	RAMPAGE_only	3	6	8	0.345391	2.521641	chr18	54945305	54945474	SINE|MIR|MIRc	-	chr18	54901510	54942950	CCDC68|ENST00000432185.5	-	54901510,54907785,54917912,54919270,54928799,54934819,54936832,54937956,54940996,54942674	54904415,54907862,54917996,54919376,54928882,54934948,54936958,54938097,54941083,54942950	0.875000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	123060137	123060257	123060256	-	High_confidence	51	89	699	30.178547	5.663313	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.773963
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	123390725	123390744	123390743	+	High_confidence	3	4	8	0.345391	2.500000	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.750000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	6787003	6787004	6787003	+	High_confidence	6	7	7	0.302217	2.521641	chr12	6786967	6787079	DNA|hAT-Charlie|MER102c	-	chr12	6786857	6800445	CD4|ENST00000535707.5	+	6786857,6789488,6800071,6800306	6787005,6789662,6800187,6800445	0.571429
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	150881712	150881744	150881743	-	RAMPAGE_only	10	11	29	1.252043	4.349192	chr1	150881732	150882191	DNA|hAT-Charlie|Charlie25	+	chr1	150809704	150876768	ARNT|NM_001286036.1	-	150809704,150813171,150814076,150816258,150816787,150817081,150817360,150817919,150823193,150826542,150829092,150829903,150831817,150832333,150834537,150836279,150839440,150842423,150846262,150852761,150858348,150876542	150812110,150813338,150814239,150816400,150816890,150817202,150817433,150818030,150823345,150826617,150829227,150829980,150831903,150832399,150834640,150836493,150839654,150842468,150846307,150852806,150858460,150876768	0.724138
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr22	39021125	39021156	39021146	+	High_confidence	6	6	23	0.992999	3.725651	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.913043
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	150125473	150125485	150125473	-	RAMPAGE_only	2	2	6	0.259043	2.584963	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	129042506	129042507	129042506	+	RAMPAGE_only	5	8	8	0.345391	2.500000	chr9	129042512	129042674	SINE|MIR|MIRc	+	chr9	129036973	129072072	FAM73B|NM_032809.2	+	129036973,129040451,129042303,129048426,129049380,129049826,129059153,129060549,129061230,129063243,129063544,129067772,129068197,129069075,129069848,129070246	129037016,129040690,129042514,129048539,129049498,129049963,129059271,129060650,129061346,129063316,129063631,129067871,129068332,129069129,129069965,129072072	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	245860590	245860611	245860590	-	RAMPAGE_only	6	6	31	1.338390	4.706891	chr1	245860451	245860544	DNA|hAT-Tip100|UCON132b	-	chr1	245749350	245858647	SMYD3|ENST00000483072.5	-	245749350,245858495	245749664,245858647	0.709677
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	11963884	11964188	11963884	-	RAMPAGE_only	7	10	123	5.310388	5.738213	chr11	11963694	11963925	SINE|MIR|MIRc	+	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	97904734	97904735	97904734	-	High_confidence	7	7	7	0.302217	2.521641	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97691206	97904664	MSTRG.2033.3	-	97691206,97699350,97720824,97721509,97740391,97828113,97883263,97904607	97691798,97699547,97720926,97721671,97740479,97828196,97883374,97904664	0.857143
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr18	48621502	48621525	48621508	+	RAMPAGE_only	4	4	17	0.733956	3.875000	chr18	48621468	48621857	LINE|L2|L2a	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	0.647059
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	13037399	13037412	13037399	+	RAMPAGE_only	9	9	23	0.992999	3.653757	chr19	13037335	13037620	LINE|CR1|L3b	+	chr19	13024938	13094770	NFIX|ENST00000587260.1	+	13024938,13073046,13073421,13073905,13075534,13078612,13081679,13090298,13094634	13025552,13073109,13073496,13074026,13075671,13078735,13081855,13090390,13094770	0.913043
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	141333551	141333579	141333575	+	RAMPAGE_only	2	3	11	0.474913	2.921928	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141636595	141733987	IL15|NM_172175.2	+	141636595,141656185,141688821,141719377,141720468,141721058,141721923,141727939,141729846,141732737	141636748,141656307,141689035,141719476,141720566,141721177,141722008,141727984,141729984,141733987	0.545455
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	100829593	100829605	100829593	+	High_confidence	3	3	11	0.474913	2.846439	chr14	100829596	100829639	LINE|L2|L2b	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.818182
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr6	79631273	79631303	79631273	+	High_confidence	23	23	99	4.274215	5.349975	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.989899
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr6	43013234	43013393	43013392	-	High_confidence	18	18	82	3.540259	5.427810	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	125110569	125110598	125110597	-	RAMPAGE_only	9	12	20	0.863478	3.846439	chr3	125110543	125110700	DNA|hAT-Charlie|MER5A	-	chr3	125082635	125120854	SLC12A8|ENST00000430155.6	-	125082635,125088309,125091438,125092100,125107480,125110188,125118768,125120598	125084052,125088370,125091556,125092198,125108126,125110335,125118856,125120854	0.950000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chrX	74588195	74588196	74588195	-	RAMPAGE_only	7	7	10	0.431739	2.721928	chrX	74588187	74588473	SINE|Alu|AluSz	+	chrX	74585216	74614617	RLIM|ENST00000332687.10	-	74585216,74594305,74595808,74614421	74593061,74594389,74596000,74614617	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr4	177445009	177445033	177445009	+	High_confidence	5	5	9	0.388565	2.641604	chr4	177444910	177445732	LTR|ERV1|LTR1A2	+	chr4	177444978	177677126	AC078881.1|ENST00000507023.1	+	177444978,177451474,177593471,177596460,177623658,177675836	177445443,177451590,177593546,177596531,177623802,177677126	0.666667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	39026130	39026199	39026130	+	High_confidence	5	5	33	1.424738	4.562500	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.969697
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	151687244	151687252	151687244	-	High_confidence	14	16	40	1.726955	4.733870	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687274	MSTRG.34172.1	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687274	0.850000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	40815634	40815658	40815652	+	RAMPAGE_only	4	4	16	0.690782	3.240224	chr7	40810256	40816712	LINE|L1|L1PA16	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.937500
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	53811930	53811942	53811930	-	High_confidence	8	8	22	0.949826	3.684184	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.772727
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr14	34650816	34650844	34650843	-	RAMPAGE_only	6	6	19	0.820304	4.037401	chr14	34650761	34650903	LTR|ERVL-MaLR|MLT1J2	+	chr14	34562408	34630183	SNX6|ENST00000362031.8	-	34562408,34567685,34567853,34575755,34581560,34586229,34593044,34597549,34603347,34605595,34608029,34609637,34629906,34630110	34563175,34567771,34568013,34575842,34581600,34586305,34593150,34597645,34603471,34605717,34608140,34609742,34629954,34630183	0.842105
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	52615378	52615410	52615378	-	High_confidence	4	4	20	0.863478	3.366091	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.800000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	14511324	14511336	14511324	-	RAMPAGE_only	2	3	8	0.345391	2.521641	chr16	14511277	14511448	SINE|tRNA-RTE|MamSINE1	+	chr16	14446956	14501689	PARN|ENST00000564882.5	-	14446956,14482637,14501552	14447081,14482827,14501689	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	11587465	11587487	11587465	-	High_confidence	5	5	9	0.388565	2.725481	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr20	50653155	50653158	50653155	+	High_confidence	12	12	22	0.949826	4.106603	chr20	50652716	50653441	LINE|L1|L1MB7	+	chr20	50653201	50662275	AL353653.1|ENST00000435177.1	+	50653201,50653945,50659865,50662020	50653222,50653995,50660078,50662275	0.545455
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr13	27445106	27445108	27445106	-	RAMPAGE_only	7	15	16	0.690782	3.577820	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	162781522	162781700	162781559	+	RAMPAGE_only	11	13	115	4.964997	4.940380	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.991304
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	122064375	122064376	122064375	+	RAMPAGE_only	8	8	10	0.431739	2.641604	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.900000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	45192659	45192660	45192659	-	RAMPAGE_only	11	11	17	0.733956	3.572469	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	0.941176
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr12	53464788	53464834	53464815	+	RAMPAGE_only	14	14	43	1.856477	4.926037	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479624	MSTRG.9205.39	+	53462513,53464759,53467220,53467804,53468779,53471637,53479405	53462567,53465973,53467293,53467843,53468832,53471807,53479624	0.976744
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr18	7946875	7946898	7946878	+	High_confidence	95	95	359	15.499425	6.397817	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.771588
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	46558627	46558630	46558627	+	RAMPAGE_only	4	6	8	0.345391	3.000000	chr3	46558357	46558849	LINE|L1|L1MEf	-	chr3	46557397	46559688	LRRC2-AS1|ENST00000599511.1	+	46557397	46559688	0.500000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	48979508	48979524	48979508	+	RAMPAGE_only	3	4	9	0.388565	2.947703	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.888889
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr7	154928474	154928507	154928503	+	High_confidence	36	36	69	2.978998	5.471664	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.884058
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr9	111662115	111662116	111662115	+	High_confidence	8	8	8	0.345391	2.750000	chr9	111662069	111662225	LINE|L2|L2	-	chr9	111661578	111670229	MSTRG.42179.7	+	111661578,111666814,111669271	111661715,111666946,111670229	0.875000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	47067487	47067518	47067498	-	High_confidence	350	388	1452	62.688484	6.059424	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.928375
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr18	36807850	36807870	36807869	-	High_confidence	18	19	45	1.942825	4.898153	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.666667
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr21	14882004	14882005	14882004	-	High_confidence	6	6	6	0.259043	2.584963	chr21	14881808	14882178	LTR|ERVL-MaLR|MLT1A0	-	chr21	14852970	14881975	LINC02246|ENST00000418954.2	-	14852970,14857541,14881886	14853431,14857708,14881975	0.833333
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	86490280	86490310	86490309	-	RAMPAGE_only	3	6	14	0.604434	3.378783	chr16	86490288	86490466	LTR|ERVL-MaLR|MLT1F1	-	chr16	86474524	86508860	FENDRR|NR_033925.1	-	86474524,86477885,86478704,86508654	86477199,86478051,86478756,86508860	0.714286
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr8	144106344	144106354	144106344	+	RAMPAGE_only	4	4	9	0.388565	2.750000	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144104511	144107611	MAF1|ENST00000534585.5	+	144104511,144105639,144105868,144106075,144106342,144106834,144107087	144104858,144105766,144105997,144106241,144106674,144106963,144107611	0.888889
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr8	38825340	38825367	38825366	+	RAMPAGE_only	9	9	41	1.770129	4.521829	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	1.000000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	160412454	160412463	160412454	-	RAMPAGE_only	3	3	8	0.345391	2.750000	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160406348	160408421	SLU7|ENST00000520841.1	-	160406348,160407475,160407745,160407970,160408328	160406629,160407615,160407813,160408068,160408421	0.625000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr5	59093347	59093354	59093351	-	RAMPAGE_only	5	6	14	0.604434	3.039149	chr5	59092926	59093513	LINE|L1|HAL1	+	chr5	58974654	59039515	PDE4D|ENST00000515011.5	-	58974654,58975656,58976349,58977190,58988492,58989754,58990803,58991831,58993371,59038858	58975080,58975839,58976472,58977345,58988592,58989919,58990902,58992004,58993465,59039515	0.928571
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr13	94305764	94305779	94305766	+	RAMPAGE_only	4	6	10	0.431739	2.725481	chr13	94305750	94305776	SINE|MIR|MIRb	-	chr13	94286347	94403217	GPC6|ENST00000617456.1	+	94286347,94305979,94382413,94398465,94403014	94286479,94306123,94382550,94398641,94403217	0.900000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr1	77129077	77129078	77129077	+	High_confidence	1203	1399	1437	62.040875	6.217024	chr1	77128993	77129084	DNA|hAT-Charlie|MER58B	+	chr1	77129113	77129668	AC113935.1|ENST00000471722.1	+	77129113	77129668	0.885177
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr17	59892716	59892753	59892716	-	High_confidence	18	19	44	1.899651	5.141250	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.931818
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chrX	29660172	29660193	29660192	+	RAMPAGE_only	12	12	19	0.820304	3.836592	chrX	29659858	29660240	LTR|ERVL-MaLR|MSTA	-	chrX	29917462	29955820	IL1RAPL1|ENST00000302196.5	+	29917462,29919948,29941650,29954521,29955101	29917596,29920094,29941794,29954692,29955820	0.578947
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	3062924	3062983	3062982	-	High_confidence	16	16	82	3.540259	5.570345	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.939024
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	128626810	128626821	128626810	-	RAMPAGE_only	5	6	21	0.906652	3.932138	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.809524
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr19	58306198	58306212	58306198	+	High_confidence	2	2	7	0.302217	2.521641	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305373	58315202	ERVK3-1|ENST00000427361.5	+	58305373,58306087,58312196,58314747	58305445,58306216,58312462,58315202	0.714286
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr22	50757208	50757248	50757247	+	High_confidence	3	4	13	0.561261	3.418296	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.615385
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr11	65887614	65887623	65887614	-	High_confidence	11	14	21	0.906652	3.584184	chr11	65887463	65887575	LINE|L2|L2	-	chr11	65883947	65888514	FIBP|ENST00000533045.5	-	65883947,65884391,65884602,65884934,65885077,65885529,65886321,65887599,65887933,65888342	65884043,65884508,65884656,65884998,65885186,65885663,65886422,65887726,65888132,65888514	0.857143
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr13	113187420	113187472	113187444	-	High_confidence	6	7	31	1.338390	4.220168	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.935484
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr16	30354665	30354680	30354679	-	High_confidence	17	18	32	1.381564	4.220168	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.968750
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr3	157533690	157533708	157533707	-	High_confidence	6	7	10	0.431739	2.947703	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157428321	157533619	VEPH1|ENST00000479987.5	-	157428321,157460180,157470313,157533512	157428488,157460355,157470529,157533619	0.700000
epithelial_cell_of_alveolus_of_lung_NONE_and_female_fetal_21_week	chr2	55618850	55618870	55618850	-	High_confidence	16	16	48	2.072347	5.126629	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr9	129889269	129889450	129889384	-	RAMPAGE_only	54	56	226	12.388680	4.298372	chr9	129889287	129889599	SINE|Alu|AluSx	+	chr9	129887186	130043162	FNBP1|ENST00000446176.6	-	129887186,129895837,129899964,129900425,129902868,129908889,129915965,129923843,129924959,129927194,129929566,129957359,129958490,129978464,129979317,129994842,130042951	129890546,129895996,129900101,129900547,129903001,129908999,129915980,129924026,129925157,129927341,129929695,129957464,129958553,129978612,129979374,129994958,130043162	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr20	50131130	50131162	50131139	-	High_confidence	138	138	384	21.049793	6.612962	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.979167
esophagus_muscularis_mucosa_female_adult_51_years	chr10	28335269	28335320	28335295	-	High_confidence	139	166	543	29.765722	4.726562	chr10	28335237	28335330	SINE|Alu|AluYc	-	chr10	28125009	28335294	STRG.61133.3	-	28125009,28131559,28147482,28149981,28202152,28238567,28334869	28125091,28131691,28147563,28150059,28202271,28238735,28335294	0.979742
esophagus_muscularis_mucosa_female_adult_51_years	chrX	103607570	103607580	103607570	+	High_confidence	5	5	11	0.602989	3.321928	chrX	103607556	103607707	SINE|MIR|MIRb	+	chrX	103607450	103609927	TCEAL3|ENST00000372628.5	+	103607450,103608603,103609042	103607716,103608673,103609927	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chr16	65053822	65053831	65053822	-	RAMPAGE_only	4	5	9	0.493355	2.500000	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chr9	129489073	129489126	129489125	+	High_confidence	13	15	61	3.343847	5.256649	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129503573	STRG.59852.5	+	129489106,129493418,129502396,129503322	129489299,129493595,129503139,129503573	0.918033
esophagus_muscularis_mucosa_female_adult_51_years	chr5	154409554	154409592	154409581	+	RAMPAGE_only	3	3	14	0.767440	2.968919	chr5	154409601	154409687	LINE|L1|L1PREC2	+	chr5	154403776	154419033	GALNT10|ENST00000517958.1	+	154403776,154409540,154412888,154415782,154416813	154404216,154409762,154413005,154415932,154419033	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr3	180870518	180870519	180870518	-	High_confidence	7	7	7	0.383720	2.521641	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180847529	180870511	STRG.26081.1	-	180847529,180870046	180847624,180870511	0.714286
esophagus_muscularis_mucosa_female_adult_51_years	chr1	11058814	11058880	11058814	-	RAMPAGE_only	4	4	17	0.931892	3.702820	chr1	11058682	11058785	SINE|MIR|MIRc	-	chr1	11054588	11060024	SRM|ENST00000376957.6	-	11054588,11054961,11055780,11056010,11056603,11058799,11059224,11059776	11054885,11055084,11055926,11056094,11056757,11058892,11059345,11060024	0.941176
esophagus_muscularis_mucosa_female_adult_51_years	chr5	128082275	128082276	128082275	-	High_confidence	4	4	6	0.328903	2.584963	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	128024026	128082960	LINC01184|ENST00000508878.5	-	128024026,128061143,128076946,128081972,128082734	128024298,128061244,128077093,128082194,128082960	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	123884239	123884260	123884259	-	High_confidence	6	6	11	0.602989	2.913977	chr3	123883879	123884307	LINE|L1|L1M4b	+	chr3	123612295	123884302	MYLK|NM_001321309.1	-	123612295,123618638,123620206,123626817,123629473,123638070,123640286,123647223,123648970,123649161,123657125,123664104,123666218,123667136,123682223,123692734,123700019,123701437,123707753,123708697,123709755,123722127,123725943,123732895,123733686,123735397,123737377,123738896,123739952,123793676,123831547,123876558,123884205	123614349,123618770,123620336,123626941,123629626,123638194,123640504,123647427,123649064,123649194,123657428,123664258,123666346,123667187,123682310,123692851,123701005,123701509,123708003,123708895,123709893,123722280,123726078,123733102,123734222,123735416,123737543,123739062,123740001,123793844,123831670,123876617,123884302	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chr16	86490292	86490310	86490309	-	High_confidence	4	4	9	0.493355	2.750000	chr16	86490288	86490466	LTR|ERVL-MaLR|MLT1F1	-	chr16	86487705	86490879	FENDRR|ENST00000598996.2	-	86487705,86490852	86490513,86490879	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr4	1241488	1241491	1241488	-	High_confidence	5	5	15	0.822258	3.640224	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1235752	1241463	CTBP1|ENST00000515690.1	-	1235752,1238182,1241324	1236316,1238337,1241463	0.866667
esophagus_muscularis_mucosa_female_adult_51_years	chr2	231072214	231072232	231072218	+	RAMPAGE_only	3	3	9	0.493355	2.503258	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr10	4204162	4204169	4204168	-	RAMPAGE_only	6	6	11	0.602989	3.095795	chr10	4204052	4204347	SINE|Alu|AluSp	+	chr10	4201140	4243912	LINC00702|ENST00000608792.1	-	4201140,4243503,4243822	4207166,4243687,4243912	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chrX	110694712	110694757	110694742	-	RAMPAGE_only	4	4	20	1.096343	3.932138	chrX	110694632	110694852	LINE|L2|L2b	-	chrX	110673855	110795765	CHRDL1|ENST00000372045.5	-	110673855,110679335,110681481,110688593,110694162,110700653,110719834,110721384,110759660,110762694,110792087,110795685	110676361,110679425,110681646,110688803,110694331,110700721,110719928,110721527,110759754,110762807,110792215,110795765	0.800000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	235977048	235977281	235977097	-	RAMPAGE_only	30	33	175	9.593004	5.829664	chr1	235977053	235977230	DNA|hAT-Tip100|UCON132b	+	chr1	235975829	236065109	NID1|ENST00000366595.7	-	235975829,235978994,235979821,235980495,235981610,235985378,235990885,235993644,236024069,236025895,236029549,236032400,236038103,236041909,236045456,236048689,236064854	235977988,235979107,235979945,235980653,235981782,235985505,235991058,235993872,236024213,236026141,236029750,236032652,236038253,236042292,236045683,236048989,236065109	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	231262310	231262327	231262310	+	RAMPAGE_only	2	2	9	0.493355	2.725481	chr2	231262210	231262315	LINE|CR1|X6A_LINE	-	chr2	231258968	231276775	ARMC9|ENST00000424740.5	+	231258968,231262305,231270981,231272954,231276635	231259102,231262398,231271072,231273078,231276775	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr9	89004045	89004328	89004214	+	RAMPAGE_only	21	25	376	20.611255	5.950079	chr9	89004116	89004425	SINE|Alu|AluSx	+	chr9	88996505	89005010	S1PR3|ENST00000375846.3	+	88996505	89005010	0.997340
esophagus_muscularis_mucosa_female_adult_51_years	chr2	28664516	28664537	28664536	-	High_confidence	8	8	26	1.425246	4.403856	chr2	28664229	28664729	LTR|ERVL|LTR18B	+	chr2	28618821	28664540	STRG.11291.2	-	28618821,28664081	28622198,28664540	0.692308
esophagus_muscularis_mucosa_female_adult_51_years	chr2	48479478	48479482	48479481	+	High_confidence	23	25	35	1.918601	4.764858	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48479320	48491284	STRG.12049.6	+	48479320,48479923,48486630,48491017	48479556,48480016,48486758,48491284	0.600000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	215843528	215843547	215843546	-	High_confidence	5	6	13	0.712623	3.392747	chr2	215843544	215843646	LINE|L2|L2b	+	chr2	215611562	215843536	LINC00607|ENST00000445174.5	-	215611562,215615276,215621117,215622685,215624111,215740876,215743813,215747303,215750242,215843325	215613738,215615634,215621350,215622761,215624235,215741021,215743914,215747394,215750417,215843536	0.615385
esophagus_muscularis_mucosa_female_adult_51_years	chr1	33021455	33021456	33021455	-	RAMPAGE_only	10	11	13	0.712623	3.418296	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.923077
esophagus_muscularis_mucosa_female_adult_51_years	chr4	39499823	39499844	39499843	-	RAMPAGE_only	18	21	35	1.918601	3.547907	chr4	39499748	39499999	SINE|Alu|AluYk2	+	chr4	39498787	39526557	UGDH|ENST00000506179.5	-	39498787,39503874,39504416,39505236,39505617,39508565,39509759,39510352,39510660,39514082,39521350,39526383	39500253,39503985,39504508,39505370,39505748,39508660,39509907,39510550,39510861,39514184,39521519,39526557	0.942857
esophagus_muscularis_mucosa_female_adult_51_years	chr8	56559496	56559497	56559496	-	High_confidence	129	131	166	9.099650	6.441060	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56496231	56559510	STRG.52897.1	-	56496231,56520120,56559452	56496333,56520567,56559510	0.578313
esophagus_muscularis_mucosa_female_adult_51_years	chr6	169654674	169654713	169654701	-	RAMPAGE_only	2	2	10	0.548172	2.947703	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169457211	169649233	WDR27|ENST00000479310.5	-	169457211,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197	169457634,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649233	0.700000
esophagus_muscularis_mucosa_female_adult_51_years	chr17	41871770	41871792	41871770	-	RAMPAGE_only	2	2	8	0.438537	2.750000	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr11	65382641	65382646	65382645	-	High_confidence	14	14	23	1.260795	4.152391	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65379452	65382645	SLC25A45|ENST00000529962.5	-	65379452,65379866,65380131,65380533,65381874,65382485	65379561,65379938,65380175,65380622,65381969,65382645	0.565217
esophagus_muscularis_mucosa_female_adult_51_years	chr6	28354190	28354213	28354205	-	High_confidence	11	13	50	2.740858	4.987059	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.660000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	206161376	206161466	206161465	+	High_confidence	8	8	47	2.576407	4.969002	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	0.851064
esophagus_muscularis_mucosa_female_adult_51_years	chr4	5813692	5813723	5813692	+	RAMPAGE_only	2	2	9	0.493355	2.750000	chr4	5813642	5813697	LINE|CR1|L3	+	chr4	5793607	5831548	STRG.27144.5	+	5793607,5797021,5798585,5801949,5804729,5808200,5809517,5810338,5810952,5818210,5820401,5828518	5793717,5797232,5798792,5802094,5804841,5808327,5809611,5810450,5814162,5818254,5828216,5831548	0.777778
esophagus_muscularis_mucosa_female_adult_51_years	chr7	40509494	40509498	40509494	+	RAMPAGE_only	42	43	82	4.495008	5.431839	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.878049
esophagus_muscularis_mucosa_female_adult_51_years	chr15	63046902	63046905	63046904	+	RAMPAGE_only	7	11	13	0.712623	2.617492	chr15	63046756	63046919	DNA|hAT-Charlie|MER5B	+	chr15	63042686	63047726	TPM1|ENST00000610733.1	+	63042686,63044026	63042943,63047726	0.846154
esophagus_muscularis_mucosa_female_adult_51_years	chr2	217936357	217936358	217936357	-	High_confidence	7	7	10	0.548172	2.947703	chr2	217936345	217936444	LINE|CR1|L3b	-	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr19	35115802	35115823	35115822	+	High_confidence	10	11	24	1.315612	4.175736	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.833333
esophagus_muscularis_mucosa_female_adult_51_years	chr1	25820151	25820203	25820192	+	High_confidence	6	7	27	1.480064	3.844107	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.777778
esophagus_muscularis_mucosa_female_adult_51_years	chr4	2867795	2867851	2867835	+	High_confidence	9	9	42	2.302321	4.733870	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.928571
esophagus_muscularis_mucosa_female_adult_51_years	chr8	143039256	143039267	143039266	+	High_confidence	5	8	15	0.822258	3.182006	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.733333
esophagus_muscularis_mucosa_female_adult_51_years	chr19	11539669	11539706	11539705	+	High_confidence	11	11	40	2.192687	4.681881	chr19	11539660	11539789	SINE|MIR|MIRb	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	0.900000
esophagus_muscularis_mucosa_female_adult_51_years	chr7	18110316	18110319	18110316	+	RAMPAGE_only	5	5	13	0.712623	3.251629	chr7	18110265	18110868	LINE|L2|L2c	-	chr7	18086948	18666923	HDAC9|ENST00000417496.6	+	18086948,18162228,18458841,18496261,18585280,18590344,18591515,18593907,18634626,18644670,18647784,18648465,18666212	18087213,18162349,18458901,18496324,18585522,18590486,18591642,18594029,18634742,18644793,18647998,18648683,18666923	0.615385
esophagus_muscularis_mucosa_female_adult_51_years	chr22	31082843	31082941	31082940	+	High_confidence	15	16	62	3.398664	4.647846	chr22	31082905	31083026	SINE|MIR|MIRc	-	chr22	31082859	31104623	SMTN|ENST00000619644.4	+	31082859,31083178,31087964,31088512,31088698,31088871,31089698,31090107,31090807,31090960,31091674,31093783,31095302,31095533,31096732,31096997,31097268,31098666,31099061,31099744,31104315	31083002,31083309,31088113,31088606,31088777,31088969,31090019,31090180,31090879,31091482,31091847,31093876,31095455,31095609,31096897,31097060,31097338,31098840,31099179,31099896,31104623	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr15	75347037	75347043	75347037	+	High_confidence	3	5	11	0.602989	2.732159	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.545455
esophagus_muscularis_mucosa_female_adult_51_years	chr17	15475727	15475733	15475732	-	High_confidence	20	23	36	1.973418	4.418201	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15437858	15475728	CDRT4|ENST00000520956.2	-	15437858,15475600	15438200,15475728	0.694444
esophagus_muscularis_mucosa_female_adult_51_years	chr1	9743889	9743908	9743904	-	RAMPAGE_only	3	3	17	0.931892	3.500000	chr1	9743549	9743856	SINE|Alu|AluJo	-	chr1	9729027	9751581	CLSTN1|ENST00000435891.5	-	9729027,9731205,9731760,9733400,9733971,9734947,9735466,9735884,9741093,9743883,9744394,9749460,9749763,9751472	9730705,9731390,9731896,9733546,9734142,9735174,9735615,9736042,9741256,9744005,9744643,9749646,9749913,9751581	0.882353
esophagus_muscularis_mucosa_female_adult_51_years	chr2	113556527	113556534	113556527	+	RAMPAGE_only	2	2	8	0.438537	2.500000	chr2	113556433	113556613	SINE|MIR|MIRc	-	chr2	113541936	113570862	STRG.14534.1	+	113541936,113556490,113563135,113568639	113542163,113556580,113563298,113570862	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr4	114365007	114365008	114365007	-	High_confidence	4	4	6	0.328903	2.584963	chr4	114364772	114365325	LTR|ERVL-MaLR|MLT1E3	-	chr4	114314990	114364934	STRG.30550.1	-	114314990,114335128,114364807	114315024,114335244,114364934	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr16	14245647	14245648	14245647	+	RAMPAGE_only	7	7	9	0.493355	2.750000	chr16	14245645	14245696	SINE|tRNA|LFSINE_Vert	+	chr16	14140624	14266771	STRG.86096.2	+	14140624,14210242,14212353,14213544,14217125,14218819,14234145,14240236,14245527,14246472,14248925,14251861,14258100,14260908	14140760,14210308,14212409,14213620,14217287,14218998,14234283,14240484,14245660,14247507,14249081,14252023,14258161,14266771	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chr3	52644709	52644718	52644717	-	RAMPAGE_only	3	3	7	0.383720	2.521641	chr3	52644388	52644682	SINE|Alu|AluSc	-	chr3	52586429	52678567	PBRM1|ENST00000446103.5	-	52586429,52587352,52589069,52603520,52609312,52615350,52617261,52624896,52627272,52628893,52634601,52641953,52643247,52644703,52648343,52651741,52658198,52662132,52668497,52678499	52586688,52587510,52589252,52603732,52609955,52615456,52617538,52624941,52627370,52629035,52634815,52642045,52643343,52644789,52648442,52651810,52658315,52662276,52668645,52678567	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr6	118651542	118651602	118651563	-	High_confidence	41	42	262	14.362098	6.510622	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.984733
esophagus_muscularis_mucosa_female_adult_51_years	chr3	135965670	135965749	135965723	+	High_confidence	48	64	350	19.186009	6.520368	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.985714
esophagus_muscularis_mucosa_female_adult_51_years	chr11	77175226	77175260	77175226	+	High_confidence	5	5	14	0.767440	3.392747	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.928571
esophagus_muscularis_mucosa_female_adult_51_years	chr11	10574183	10574480	10574386	-	RAMPAGE_only	39	47	240	13.156120	5.764829	chr11	10574346	10574533	LINE|L2|L2c	-	chr11	10573090	10652185	MRVI1|ENST00000424001.5	-	10573090,10580454,10581866,10591547,10593491,10594145,10600917,10603119,10604404,10606741,10609727,10623777,10625965,10627715,10627972,10628750,10629537,10631990,10652024	10576575,10580589,10581986,10591612,10593599,10594195,10601059,10603251,10604545,10606772,10609851,10623856,10626583,10627763,10628025,10628828,10629711,10632061,10652185	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr22	42721262	42721276	42721262	-	High_confidence	9	9	21	1.151161	3.681881	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.619048
esophagus_muscularis_mucosa_female_adult_51_years	chr12	10710653	10710654	10710653	-	High_confidence	31	31	32	1.754149	3.575006	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.718750
esophagus_muscularis_mucosa_female_adult_51_years	chr2	217937254	217937255	217937254	-	High_confidence	24	24	24	1.315612	4.251629	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr11	47414174	47414211	47414198	+	High_confidence	12	12	62	3.398664	4.453250	chr11	47413942	47414364	LINE|L2|L2b	+	chr11	47414436	47415416	SLC39A13|ENST00000527829.1	+	47414436,47414776,47415059	47414475,47414909,47415416	0.564516
esophagus_muscularis_mucosa_female_adult_51_years	chr2	240022172	240022280	240022252	-	RAMPAGE_only	3	3	30	1.644515	3.539572	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr5	172954206	172954207	172954206	+	High_confidence	6	6	9	0.493355	2.750000	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172954080	172969721	STRG.38767.2	+	172954080,172959864,172968458,172969412	172954336,172960041,172968599,172969721	0.777778
esophagus_muscularis_mucosa_female_adult_51_years	chr21	28048446	28048447	28048446	+	High_confidence	355	361	414	22.694308	4.477170	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.954106
esophagus_muscularis_mucosa_female_adult_51_years	chr1	231832513	231832514	231832513	+	RAMPAGE_only	9	9	11	0.602989	3.095795	chr1	231832394	231832542	LTR|ERV1|HERVH-int	-	chr1	231818904	232009022	DISC1|ENST00000427560.1	+	231818904,231958827,232008784	231819150,231958888,232009022	0.545455
esophagus_muscularis_mucosa_female_adult_51_years	chr9	20658607	20658624	20658607	+	High_confidence	4	6	10	0.548172	2.921928	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.800000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	33838232	33838257	33838232	+	RAMPAGE_only	6	6	17	0.931892	3.702820	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.764706
esophagus_muscularis_mucosa_female_adult_51_years	chr2	229586868	229586906	229586883	-	High_confidence	3	3	18	0.986709	3.969816	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229357769	229586917	STRG.18586.2	-	229357769,229366872,229388264,229407231,229418107,229447315,229477139,229512782,229546946,229585857,229586693	229358651,229367119,229388396,229407345,229418230,229447540,229477253,229512936,229547092,229586024,229586917	0.944444
esophagus_muscularis_mucosa_female_adult_51_years	chr14	49771672	49771673	49771672	+	RAMPAGE_only	4	4	7	0.383720	2.521641	chr14	49771716	49772002	SINE|Alu|AluSz	+	chr14	49768167	49783122	KLHDC2|ENST00000557247.1	+	49768167,49771593,49774560,49777838,49778177,49778410,49779594,49779747,49780212,49782369,49782829	49768621,49771673,49774678,49777954,49778259,49778494,49779675,49779806,49780322,49782457,49783122	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr20	14226558	14226583	14226558	+	High_confidence	5	5	18	0.986709	3.572469	chr20	14226326	14227700	LTR|ERV1|LTR12C	+	chr20	14226396	14227913	STRG.98295.1	+	14226396	14227913	0.944444
esophagus_muscularis_mucosa_female_adult_51_years	chr21	44962764	44962798	44962790	+	High_confidence	19	19	60	3.289030	5.047299	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44962788	44976973	STRG.101410.4	+	44962788,44967033,44973196,44976679	44962856,44967181,44973265,44976973	0.900000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	200889135	200889154	200889153	-	High_confidence	11	11	33	1.808967	4.413716	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889154	PPIL3|ENST00000392283.8	-	200870955,200876918,200881420,200882341,200885697,200887612,200888955	200871521,200877037,200881488,200882435,200885772,200887685,200889154	0.939394
esophagus_muscularis_mucosa_female_adult_51_years	chr17	77390271	77390295	77390290	+	RAMPAGE_only	15	15	36	1.973418	4.218129	chr17	77390212	77390366	SINE|Alu|AluYc	+	chr17	77380122	77402483	SEPT9|ENST00000589140.1	+	77380122,77402058	77380249,77402483	0.833333
esophagus_muscularis_mucosa_female_adult_51_years	chr2	227164620	227164621	227164620	+	High_confidence	19	19	25	1.370429	4.403856	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164577	227277494	STRG.18545.1	+	227164577,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277494	0.960000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	48597093	48597130	48597115	+	RAMPAGE_only	2	2	9	0.493355	2.750000	chr2	48596847	48597152	SINE|Alu|AluSx	-	chr2	48530185	48598513	STON1|ENST00000406226.1	+	48530185,48530712,48580586,48591652,48595227	48530216,48530829,48582563,48591855,48598513	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chr12	91179456	91179463	91179462	-	High_confidence	19309	19959	29418	1612.611457	7.464324	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.923686
esophagus_muscularis_mucosa_female_adult_51_years	chr2	219420860	219420953	219420952	+	RAMPAGE_only	594	596	3566	195.478022	7.654031	chr2	219420988	219421091	SINE|MIR|MIRc	+	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	0.993550
esophagus_muscularis_mucosa_female_adult_51_years	chr14	39064912	39064924	39064912	-	RAMPAGE_only	4	4	10	0.548172	2.947703	chr14	39064766	39064897	SINE|Alu|FLAM_C	-	chr14	39031918	39088723	SEC23A|ENST00000537403.5	-	39031918,39039030,39040731,39042785,39045162,39048651,39055142,39061764,39063323,39064912,39067172,39074414,39075934,39085761,39086928,39087523	39033328,39039096,39040887,39042872,39045324,39048729,39055296,39061871,39063413,39064993,39067296,39074530,39076093,39085906,39087008,39088723	0.900000
esophagus_muscularis_mucosa_female_adult_51_years	chrX	48589967	48590030	48590006	+	High_confidence	7	8	19	1.041526	3.932138	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48590041	48599682	STRG.104630.5	+	48590041,48597957,48598716,48599352,48599586	48590287,48598037,48598957,48599462,48599682	0.894737
esophagus_muscularis_mucosa_female_adult_51_years	chr15	80059918	80059933	80059918	+	High_confidence	152	169	377	20.666072	5.586348	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.989390
esophagus_muscularis_mucosa_female_adult_51_years	chr14	50159440	50159441	50159440	-	RAMPAGE_only	17	17	21	1.151161	4.037401	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.904762
esophagus_muscularis_mucosa_female_adult_51_years	chr10	88953815	88953816	88953815	+	RAMPAGE_only	9	9	10	0.548172	2.641604	chr10	88953621	88953984	LTR|ERVL-MaLR|THE1D	+	chr10	88990558	89017061	FAS|NM_000043.5	+	88990558,89003028,89007699,89008888,89010538,89010752,89011998,89013342,89014118	88990906,89003194,89007837,89008997,89010600,89010815,89012081,89013367,89017061	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr16	11774341	11774367	11774341	-	High_confidence	4	5	14	0.767440	3.026987	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	0.785714
esophagus_muscularis_mucosa_female_adult_51_years	chr13	49495740	49495750	49495740	+	High_confidence	5	5	10	0.548172	2.846439	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495664	49518060	PHF11|ENST00000481509.5	+	49495664,49513058,49518017	49496095,49513166,49518060	0.700000
esophagus_muscularis_mucosa_female_adult_51_years	chr14	55671852	55671875	55671852	+	High_confidence	5	5	17	0.931892	3.292770	chr14	55671902	55672073	DNA|hAT-Charlie|MER5A	+	chr14	55671314	55684579	KTN1|ENST00000556631.1	+	55671314,55678351,55679564,55684098	55675918,55678444,55679685,55684579	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr14	50756643	50756650	50756649	-	RAMPAGE_only	3	3	7	0.383720	2.584963	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.714286
esophagus_muscularis_mucosa_female_adult_51_years	chr19	17197815	17197857	17197815	+	High_confidence	2	2	12	0.657806	3.418296	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	48979494	48979565	48979523	+	RAMPAGE_only	5	5	25	1.370429	3.969002	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.920000
esophagus_muscularis_mucosa_female_adult_51_years	chr5	151669675	151669773	151669678	-	RAMPAGE_only	16	23	102	5.591351	5.261657	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.980392
esophagus_muscularis_mucosa_female_adult_51_years	chr15	65642906	65642933	65642932	+	High_confidence	4	5	13	0.712623	3.085055	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr16	30445873	30445877	30445873	-	High_confidence	71	91	142	7.784038	6.038990	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.978873
esophagus_muscularis_mucosa_female_adult_51_years	chr4	15337853	15337870	15337858	-	High_confidence	16	18	45	2.466773	4.430199	chr4	15337541	15337952	LTR|ERVL-MaLR|MLT1J1-int	-	chr4	15336429	15338622	STRG.27615.4	-	15336429,15337658	15336996,15338622	0.933333
esophagus_muscularis_mucosa_female_adult_51_years	chr10	4206215	4206794	4206793	-	RAMPAGE_only	60	60	916	50.212526	7.130592	chr10	4206568	4206861	LINE|L2|L2a	+	chr10	4201140	4243912	LINC00702|ENST00000608792.1	-	4201140,4243503,4243822	4207166,4243687,4243912	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	29280838	29280877	29280838	-	High_confidence	7	8	35	1.918601	4.707715	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.628571
esophagus_muscularis_mucosa_female_adult_51_years	chr10	93431456	93431494	93431456	-	RAMPAGE_only	2	2	11	0.602989	2.721928	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chr20	37298760	37298761	37298760	+	RAMPAGE_only	20	21	27	1.480064	4.103465	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.925926
esophagus_muscularis_mucosa_female_adult_51_years	chr1	1721637	1721638	1721637	-	High_confidence	7	7	10	0.548172	3.169925	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.700000
esophagus_muscularis_mucosa_female_adult_51_years	chr10	73536388	73536401	73536400	-	RAMPAGE_only	3	4	11	0.602989	2.913977	chr10	73536351	73536426	LINE|L1|L1PBa	+	chr10	73497537	73541702	USP54|ENST00000424265.5	-	73497537,73500654,73505307,73516374,73520907,73523582,73526646,73529679,73530142,73530703,73534599,73536268,73539443,73541374,73541632	73499188,73500838,73505426,73517747,73521027,73523750,73526780,73529911,73530523,73530835,73534770,73536437,73539593,73541521,73541702	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chr7	134527596	134527597	134527596	+	High_confidence	8	8	8	0.438537	3.000000	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr19	47780076	47780108	47780107	+	High_confidence	9	11	24	1.315612	4.136842	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr19	44662249	44662270	44662255	+	RAMPAGE_only	2	3	8	0.438537	2.500000	chr19	44661967	44662259	LTR|ERVL|MER77	-	chr19	44643913	44663583	PVR|ENST00000187830.2	+	44643913,44647299,44649808,44653899,44657761,44658741,44661291,44661739	44644175,44647570,44650105,44654017,44657910,44658900,44661323,44663583	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	219434273	219434284	219434273	+	High_confidence	24	25	54	2.960127	5.120357	chr2	219433955	219434290	LINE|L2|L2c	+	chr2	219434845	219493632	SPEG|ENST00000312358.11	+	219434845,219444652,219444824,219447973,219451135,219451624,219461881,219462297,219464432,219467173,219468577,219468858,219469155,219471867,219472226,219472889,219473503,219473727,219476869,219477276,219477688,219477904,219479143,219479782,219479961,219480670,219481303,219481637,219482783,219483097,219485345,219488193,219488497,219488777,219489053,219489335,219490408,219490732,219491793,219492110,219492593	219435365,219444742,219445161,219449271,219451279,219451807,219462057,219462386,219464608,219467434,219468736,219469048,219469379,219471987,219472331,219473096,219473627,219473903,219476982,219477445,219477785,219478105,219479201,219479860,219480140,219480697,219481456,219481680,219482852,219485072,219485477,219488310,219488665,219488900,219489221,219489939,219490648,219490956,219491869,219492260,219493632	0.611111
esophagus_muscularis_mucosa_female_adult_51_years	chr5	150118751	150118822	150118751	-	RAMPAGE_only	4	4	46	2.521590	4.700208	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr4	79492566	79492601	79492600	+	High_confidence	3	4	10	0.548172	2.721928	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr16	15710481	15710518	15710481	-	High_confidence	3	4	24	1.315612	4.251629	chr16	15710240	15710545	SINE|Alu|AluSc	+	chr16	15703740	15711270	MYH11|ENST00000573908.1	-	15703740,15711112	15704123,15711270	0.958333
esophagus_muscularis_mucosa_female_adult_51_years	chr5	178206359	178206373	178206372	+	High_confidence	7	7	12	0.657806	3.095795	chr5	178206313	178206462	SINE|MIR|MIRb	-	chr5	178205567	178206866	HNRNPAB|ENST00000504796.1	+	178205567,178206731	178206010,178206866	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr19	55280217	55280246	55280217	-	High_confidence	4	7	16	0.877075	2.530639	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	188225403	188225500	188225403	+	High_confidence	16	17	102	5.591351	5.684249	chr3	188225342	188225427	SINE|MIR|MIR3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.990196
esophagus_muscularis_mucosa_female_adult_51_years	chr12	45292825	45292838	45292825	+	High_confidence	5	5	17	0.931892	3.280639	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.882353
esophagus_muscularis_mucosa_female_adult_51_years	chrX	136167003	136167019	136167004	+	High_confidence	41	80	130	7.126232	5.862774	chrX	136166859	136167051	SINE|MIR|MIR	-	chrX	136167003	136208575	FHL1|ENST00000452016.5	+	136167003,136169906,136206406,136207015,136207791,136208454	136167077,136169980,136206588,136207190,136207961,136208575	0.761538
esophagus_muscularis_mucosa_female_adult_51_years	chr9	76613361	76613651	76613432	-	RAMPAGE_only	39	40	241	13.210938	6.212233	chr9	76613273	76613560	DNA|hAT-Charlie|MER58B	-	chr9	76611375	76692193	PRUNE2|ENST00000376717.6	-	76611375,76619339,76624451,76629191,76636470,76637417,76638185,76644738,76652482,76655422,76692073	76614600,76619387,76624490,76629290,76636557,76637549,76638288,76644912,76652683,76655502,76692193	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr19	9621784	9621787	9621786	-	High_confidence	12	16	22	1.205978	3.784942	chr19	9621665	9622251	LTR|ERV1|LTR10C	-	chr19	9607331	9621399	ZNF561|ENST00000302851.7	-	9607331,9614020,9617044,9618090,9619431,9621161	9611336,9614103,9617171,9618179,9619582,9621399	0.590909
esophagus_muscularis_mucosa_female_adult_51_years	chr5	139364584	139364643	139364615	+	RAMPAGE_only	4	5	34	1.863784	4.079679	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.970588
esophagus_muscularis_mucosa_female_adult_51_years	chr2	241235121	241235160	241235121	-	RAMPAGE_only	2	2	15	0.822258	3.521641	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241230774	241236664	HDLBP|ENST00000470482.5	-	241230774,241233819,241235120,241235489,241236614	241230944,241233963,241235275,241235594,241236664	0.733333
esophagus_muscularis_mucosa_female_adult_51_years	chr9	92536651	92536675	92536674	-	High_confidence	3	3	9	0.493355	2.947703	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr14	77076188	77076194	77076188	-	High_confidence	7	7	13	0.712623	3.084963	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77074425	77076333	STRG.80222.1	-	77074425,77076104	77074598,77076333	0.538462
esophagus_muscularis_mucosa_female_adult_51_years	chr4	119043125	119043126	119043125	+	RAMPAGE_only	9	9	12	0.657806	2.918296	chr4	119043070	119043161	SINE|Alu|AluYj4	-	chr4	119042023	119043937	AC096745.2|ENST00000627783.1	+	119042023	119043937	0.916667
esophagus_muscularis_mucosa_female_adult_51_years	chr8	143281669	143281687	143281686	-	High_confidence	16	17	56	3.069761	4.940184	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.535714
esophagus_muscularis_mucosa_female_adult_51_years	chr2	179043807	179043808	179043807	-	RAMPAGE_only	6	6	6	0.328903	2.584963	chr2	179042647	179044414	LINE|L1|L1PA10	+	chr2	178829756	179050059	CCDC141|NM_173648.3	-	178829756,178836893,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900,178886751,178888526,178905328,178918712,178944534,178961229,178975056,178978483,179047283,179049839	178834440,178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178885092,178886871,178888668,178905501,178918907,178944651,178961483,178975165,178978675,179047406,179050059	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr12	9065161	9065174	9065173	+	High_confidence	15	15	47	2.576407	4.796937	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.638298
esophagus_muscularis_mucosa_female_adult_51_years	chr22	41261447	41261472	41261447	-	RAMPAGE_only	2	2	8	0.438537	2.521641	chr22	41261251	41261408	SINE|MIR|MIRc	-	chr22	41245614	41282514	RANGAP1|ENST00000455915.6	-	41245614,41249329,41249728,41251006,41252871,41254307,41256020,41256190,41256710,41257947,41261445,41264663,41268096,41274599,41280932	41246672,41249451,41249817,41251109,41252991,41254494,41256105,41256290,41256824,41258106,41261580,41264843,41268156,41274727,41282514	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr16	86490855	86490911	86490910	-	High_confidence	3	3	18	0.986709	3.461320	chr16	86490702	86490896	LINE|L1|L1MC5a	-	chr16	86487705	86490879	FENDRR|ENST00000598996.2	-	86487705,86490852	86490513,86490879	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	40466638	40466672	40466668	+	RAMPAGE_only	3	3	9	0.493355	2.750000	chr3	40466612	40466696	SINE|MIR|MIR	+	chr3	40457291	40468587	RPL14|ENST00000338970.10	+	40457291,40457889,40458641,40461406,40461607,40461938	40457363,40457991,40458736,40461506,40461661,40468587	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chrX	63432431	63432457	63432431	-	High_confidence	2	2	11	0.602989	2.646439	chrX	63428375	63433922	LTR|ERV1|LTR46-int	-	chrX	63426559	63431612	LINC01278|ENST00000608623.1	-	63426559	63431612	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chr2	201115997	201116019	201116007	+	High_confidence	6	6	27	1.480064	3.958229	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr10	95493224	95493287	95493224	-	RAMPAGE_only	8	8	42	2.302321	4.594466	chr10	95493013	95493319	SINE|Alu|AluSg	+	chr10	95414743	95482671	SORBS1|ENST00000492542.1	-	95414743,95421960,95432447,95437489,95441125,95482433	95414862,95422073,95432576,95437555,95441180,95482671	0.714286
esophagus_muscularis_mucosa_female_adult_51_years	chr9	34233920	34233921	34233920	+	RAMPAGE_only	17	17	23	1.260795	4.229871	chr9	34233518	34234003	LINE|L2|L2a	-	chr9	34220438	34252522	UBAP1|ENST00000359544.2	+	34220438,34220907,34234215,34241184,34249778,34250657,34251391	34220467,34220948,34234340,34242108,34249961,34250759,34252522	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr13	30429287	30429289	30429288	-	RAMPAGE_only	8	13	13	0.712623	3.026987	chr13	30428989	30429302	SINE|Alu|AluSq2	+	chr13	30202629	30307487	KATNAL1|NM_032116.4	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30307330	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307487	0.692308
esophagus_muscularis_mucosa_female_adult_51_years	chr11	77175289	77175303	77175302	+	High_confidence	14	14	22	1.205978	3.075580	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.954545
esophagus_muscularis_mucosa_female_adult_51_years	chrX	53585027	53585152	53585027	-	RAMPAGE_only	6	6	66	3.617933	4.237115	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.969697
esophagus_muscularis_mucosa_female_adult_51_years	chr10	133369997	133370017	133369997	-	RAMPAGE_only	5	6	11	0.602989	2.521928	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chr19	20423690	20423704	20423703	-	High_confidence	15	21	44	2.411955	4.251457	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20405734	20423683	STRG.95292.1	-	20405734,20408949,20423480	20406132,20409028,20423683	0.681818
esophagus_muscularis_mucosa_female_adult_51_years	chr2	217939269	217939315	217939281	-	RAMPAGE_only	25	26	69	3.782385	4.787387	chr2	217939059	217939291	SINE|MIR|MIR	-	chr2	217803445	217944005	TNS1|ENST00000611415.4	-	217803445,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217830366,217831454,217835090,217836014,217847509,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217906334,217907209,217920194,217943864	217804603,217808107,217808671,217809991,217810319,217812445,217813304,217813816,217814998,217818759,217821938,217830390,217831547,217835166,217836211,217849087,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217906385,217907251,217920236,217944005	0.971014
esophagus_muscularis_mucosa_female_adult_51_years	chr20	44714469	44714470	44714469	+	High_confidence	8	8	12	0.657806	3.095795	chr20	44714278	44714680	LINE|L2|L2b	+	chr20	44714843	44727812	WISP2|NM_001323370.1	+	44714843,44715365,44719896,44724737,44727086	44715161,44715450,44720113,44724992,44727812	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr7	66795529	66795562	66795529	+	RAMPAGE_only	2	2	10	0.548172	3.121928	chr7	66795573	66795610	DNA|hAT-Tip100|MamTip2	+	chr7	66797371	66808064	RABGEF1|ENST00000461017.1	+	66797371,66799322,66805139,66807837	66797506,66799414,66805396,66808064	0.900000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	182928788	182928790	182928788	-	RAMPAGE_only	14	20	23	1.260795	4.011365	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.739130
esophagus_muscularis_mucosa_female_adult_51_years	chrX	115647984	115647988	115647984	+	RAMPAGE_only	6	6	11	0.602989	3.121928	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chr6	28354041	28354153	28354137	-	High_confidence	18	18	135	7.400318	5.723697	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28326774	28354186	STRG.40587.2	-	28326774,28327382,28329302,28336789,28353861	28326854,28327533,28329714,28336943,28354186	0.740741
esophagus_muscularis_mucosa_female_adult_51_years	chr18	2589120	2589125	2589120	+	RAMPAGE_only	11	13	19	1.041526	3.826875	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	212792469	212792473	212792472	-	High_confidence	10	13	16	0.877075	3.456565	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.687500
esophagus_muscularis_mucosa_female_adult_51_years	chr16	30729558	30729568	30729567	+	RAMPAGE_only	2	4	7	0.383720	2.521641	chr16	30729600	30729733	LINE|CR1|L3	+	chr16	30709895	30744281	STRG.86740.4	+	30709895,30710753,30710998,30711570,30711834,30712261,30712678,30713207,30713518,30716065,30716292,30720161,30720712,30721188,30722121,30722944,30723583,30728965,30729369,30733279,30733601,30733893,30734495,30736199,30736540,30737048,30741740,30743781	30710128,30710847,30711088,30711744,30712157,30712439,30712815,30713377,30713711,30716202,30716479,30720331,30720978,30721476,30722286,30723229,30725082,30729231,30729572,30733449,30733798,30734008,30734615,30736394,30736624,30740707,30741908,30744281	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr18	48621504	48621530	48621522	+	RAMPAGE_only	9	10	47	2.576407	4.772570	chr18	48621468	48621857	LINE|L2|L2a	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	0.595745
esophagus_muscularis_mucosa_female_adult_51_years	chr12	104030726	104030727	104030726	+	High_confidence	33	34	46	2.521590	5.240218	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.847826
esophagus_muscularis_mucosa_female_adult_51_years	chrX	63432384	63432395	63432384	-	High_confidence	3	3	8	0.438537	2.521641	chrX	63428375	63433922	LTR|ERV1|LTR46-int	-	chrX	63426559	63431612	LINC01278|ENST00000608623.1	-	63426559	63431612	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr6	31400605	31400618	31400605	-	High_confidence	6	6	19	1.041526	4.037401	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31394376	31400790	STRG.40775.1	-	31394376,31398058	31395217,31400790	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr12	53464788	53464834	53464815	+	RAMPAGE_only	3	3	13	0.712623	3.251629	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.692308
esophagus_muscularis_mucosa_female_adult_51_years	chr1	168137436	168137487	168137436	-	High_confidence	15	15	53	2.905310	5.056021	chr1	168137391	168137473	LINE|L2|L2b	-	chr1	168085277	168137573	STRG.6743.8	-	168085277,168087584,168090563,168096507,168104476,168137164	168085796,168087704,168090668,168097232,168104894,168137573	0.792453
esophagus_muscularis_mucosa_female_adult_51_years	chr7	88283836	88283856	88283855	-	RAMPAGE_only	7	7	12	0.657806	3.095795	chr7	88283844	88283877	LINE|RTE-BovB|MamRTE1	-	chr7	88270892	88306880	STRG.48733.1	-	88270892,88274441,88280914,88282640,88283813,88306791	88274404,88279628,88281079,88283168,88284271,88306880	0.916667
esophagus_muscularis_mucosa_female_adult_51_years	chr5	172954028	172954055	172954028	+	High_confidence	3	3	9	0.493355	2.750000	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172954080	172969721	STRG.38767.2	+	172954080,172959864,172968458,172969412	172954336,172960041,172968599,172969721	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chr14	44912527	44912546	44912535	-	High_confidence	3	3	10	0.548172	2.725481	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr9	98943562	98943617	98943575	+	High_confidence	20	29	156	8.551478	6.120410	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	33130023	33130063	33130062	+	RAMPAGE_only	8	8	13	0.712623	3.085055	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr9	92536601	92536602	92536601	-	High_confidence	11	13	14	0.767440	3.392747	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.785714
esophagus_muscularis_mucosa_female_adult_51_years	chr2	127765174	127765175	127765174	-	RAMPAGE_only	8	8	8	0.438537	2.750000	chr2	127765110	127765160	LINE|CR1|L3	-	chr2	127701021	127811147	WDR33|ENST00000322313.8	-	127701021,127708676,127709489,127709692,127713582,127717154,127719264,127721835,127722590,127722957,127723252,127724332,127724886,127725060,127726650,127763061,127764827,127765173,127768188,127768932,127770777,127811011	127706552,127708892,127709582,127709856,127714021,127717263,127720353,127721988,127722730,127723044,127723347,127724443,127724965,127725215,127726777,127763159,127764979,127765269,127768293,127769001,127771004,127811147	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr15	75626279	75626305	75626304	-	High_confidence	6	6	10	0.548172	2.921928	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr16	81664312	81664338	81664312	+	RAMPAGE_only	3	3	11	0.602989	2.646439	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chr4	79258869	79258870	79258869	+	High_confidence	6	7	8	0.438537	2.500000	chr4	79257987	79259677	LTR|ERV1|MER52A	+	chr4	79258780	79308654	LINC01088|ENST00000511241.5	+	79258780,79306690,79308272	79259039,79306728,79308654	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	100268280	100268281	100268280	+	RAMPAGE_only	13	13	15	0.822258	3.235926	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.933333
esophagus_muscularis_mucosa_female_adult_51_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	10	10	22	1.205978	3.879664	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.863636
esophagus_muscularis_mucosa_female_adult_51_years	chr4	87524673	87524705	87524700	-	RAMPAGE_only	4	6	19	1.041526	3.836592	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87473417	87529092	SPARCL1|ENST00000503414.5	-	87473417,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87497130,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87497239,87499585,87529092	0.684211
esophagus_muscularis_mucosa_female_adult_51_years	chr19	45424364	45424396	45424395	-	High_confidence	3	3	7	0.383720	2.807355	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr19	3062922	3062983	3062982	-	High_confidence	92	98	461	25.270715	6.102297	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.995662
esophagus_muscularis_mucosa_female_adult_51_years	chr6	127330899	127330918	127330900	-	High_confidence	2	3	9	0.493355	2.750000	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.777778
esophagus_muscularis_mucosa_female_adult_51_years	chr2	110118134	110118147	110118146	-	RAMPAGE_only	5	5	13	0.712623	3.026987	chr2	110117625	110118184	LINE|L1|L1MD2	-	chr2	110083869	110116566	MALL|NM_005434.4	-	110083869,110087571,110091602,110115687	110085757,110087697,110091770,110116566	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr6	48111154	48111181	48111177	-	RAMPAGE_only	12	12	70	3.837202	5.352647	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47878027	48068689	PTCHD4|NM_001013732.3	-	47878027,48008633,48068229	47879936,48009114,48068689	0.671429
esophagus_muscularis_mucosa_female_adult_51_years	chr14	32402135	32402136	32402135	+	RAMPAGE_only	25	25	27	1.480064	3.347601	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32428375	32546449	STRG.78237.5	+	32428375,32433459,32535553,32545229	32428565,32433817,32535805,32546449	0.851852
esophagus_muscularis_mucosa_female_adult_51_years	chr3	40464844	40464907	40464904	+	RAMPAGE_only	10	17	35	1.918601	4.292770	chr3	40464917	40465003	SINE|MIR|MIRb	+	chr3	40457291	40468587	RPL14|ENST00000338970.10	+	40457291,40457889,40458641,40461406,40461607,40461938	40457363,40457991,40458736,40461506,40461661,40468587	0.971429
esophagus_muscularis_mucosa_female_adult_51_years	chr11	58578102	58578133	58578102	-	High_confidence	10	11	54	2.960127	4.839769	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.740741
esophagus_muscularis_mucosa_female_adult_51_years	chr1	54243234	54243266	54243265	-	RAMPAGE_only	4	4	12	0.657806	2.845351	chr1	54243091	54243229	SINE|MIR|MIR3	-	chr1	54226516	54228834	SSBP3|ENST00000528930.5	-	54226516,54228254,54228448,54228747	54227160,54228356,54228477,54228834	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr3	46463614	46463633	46463614	-	High_confidence	4	4	11	0.602989	2.550341	chr3	46463529	46463617	LTR|Gypsy|MamGypsy2-LTR	-	chr3	46436004	46463671	LTF|NM_001199149.1	-	46436004,46437939,46439295,46441415,46443440,46445280,46446439,46447307,46448862,46449853,46450494,46454304,46455294,46455795,46456289,46459655,46463443	46436229,46438129,46439480,46441483,46443582,46445436,46446493,46447398,46449017,46450028,46450673,46454360,46455442,46455978,46456398,46459819,46463671	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	63	63	64	3.508299	5.369904	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.515625
esophagus_muscularis_mucosa_female_adult_51_years	chr17	77426560	77426565	77426564	+	High_confidence	5	5	10	0.548172	3.169925	chr17	77426503	77426867	LINE|L2|L2a	+	chr17	77426955	77488273	SEPT9|ENST00000586521.5	+	77426955,77482143,77487423,77488239	77427201,77482335,77487552,77488273	0.700000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	147172973	147173016	147172973	+	High_confidence	2	2	13	0.712623	3.546594	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	188885882	188886404	188885882	+	RAMPAGE_only	541	564	1874	102.727373	6.974680	chr3	188885494	188885956	LINE|L1|L1PA3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.997332
esophagus_muscularis_mucosa_female_adult_51_years	chr3	52518326	52518332	52518331	+	High_confidence	4	4	8	0.438537	2.521641	chr3	52518378	52518454	SINE|MIR|MIR3	+	chr3	52518800	52523476	STAB1|ENST00000481626.5	+	52518800,52519263,52519943,52520399,52520641,52521360,52521595,52521843,52522036,52522329,52522554,52522774,52523024,52523221,52523426	52518869,52519564,52520290,52520549,52521005,52521510,52521700,52521951,52522230,52522474,52522688,52522940,52523134,52523341,52523476	0.750000
esophagus_muscularis_mucosa_female_adult_51_years	chr4	118769850	118769863	118769862	-	High_confidence	6	6	19	1.041526	3.530493	chr4	118769853	118769919	SINE|MIR|MIRb	+	chr4	118723023	118769840	SEC24D|ENST00000511481.5	-	118723023,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118769763	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118769840	0.894737
esophagus_muscularis_mucosa_female_adult_51_years	chr4	119037869	119037947	119037869	+	RAMPAGE_only	3	3	18	0.986709	3.947703	chr4	119037709	119037951	SINE|MIR|MIR	-	chr4	118888854	119038513	SYNPO2|ENST00000429713.6	+	118888854,119023429,119026626,119029844	118889141,119023581,119027438,119038513	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chr16	87381451	87381483	87381469	-	RAMPAGE_only	4	4	10	0.548172	2.725481	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87329335	87383748	STRG.88080.1	-	87329335,87333885,87335303,87336154,87342876,87343597,87347173,87358410,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87358497,87360366,87383748	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr18	34709342	34709389	34709342	+	High_confidence	5	6	27	1.480064	4.102679	chr18	34709150	34709395	LINE|L2|L2c	-	chr18	34709355	34812056	DTNA|ENST00000585446.1	+	34709355,34794036,34806218,34811958	34709517,34794250,34806304,34812056	0.518519
esophagus_muscularis_mucosa_female_adult_51_years	chr1	202582653	202582664	202582663	+	RAMPAGE_only	35	35	53	2.905310	4.485496	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	529	686	1315	72.084576	5.552812	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.985551
esophagus_muscularis_mucosa_female_adult_51_years	chr17	59619894	59619923	59619894	+	High_confidence	641	704	1798	98.561269	6.102192	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.977753
esophagus_muscularis_mucosa_female_adult_51_years	chr14	100569561	100569656	100569561	-	High_confidence	6	7	41	2.247504	4.704994	chr14	100569527	100569624	LINE|L2|L2b	+	chr14	100538887	100569558	BEGAIN|ENST00000556188.5	-	100538887,100540495,100543857,100544999,100546500,100567910,100569426	100539315,100540579,100543965,100545066,100546662,100567939,100569558	0.975610
esophagus_muscularis_mucosa_female_adult_51_years	chr20	44109012	44109032	44109012	-	RAMPAGE_only	2	3	7	0.383720	2.521641	chr20	44108999	44109119	LINE|CR1|L3	-	chr20	44096225	44187093	STRG.99293.2	-	44096225,44102541,44114781,44115664,44118504,44159617,44186326	44102392,44113503,44114876,44116386,44118623,44160407,44187093	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr4	141332616	141332617	141332616	-	High_confidence	54	54	56	3.069761	3.744090	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.964286
esophagus_muscularis_mucosa_female_adult_51_years	chr14	90405124	90405784	90405516	+	RAMPAGE_only	50	50	1145	62.765658	6.926695	chr14	90405466	90405547	SINE|tRNA-RTE|MamSINE1	+	chr14	90396982	90408261	CALM1|ENST00000356978.8	+	90396982,90400064,90401258,90403861,90404378,90404688	90397233,90400095,90401402,90403968,90404514,90408261	0.999127
esophagus_muscularis_mucosa_female_adult_51_years	chr9	39810033	39810084	39810033	-	High_confidence	6	6	25	1.370429	4.142915	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803652	39810013	STRG.57028.2	-	39803652,39809485,39809730	39803859,39809615,39810013	0.880000
esophagus_muscularis_mucosa_female_adult_51_years	chr12	109179279	109179283	109179279	+	RAMPAGE_only	8	8	21	1.151161	3.346439	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109139396	109260147	ACACB|ENST00000377854.9	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260147	0.952381
esophagus_muscularis_mucosa_female_adult_51_years	chr10	74969714	74969717	74969714	+	RAMPAGE_only	5	6	11	0.602989	2.646439	chr10	74969693	74969726	LINE|L2|L2a	-	chr10	74842619	75022125	KAT6B|ENST00000648369.1	+	74842619,74959969,74969659,74970019,74972506,74975398,74977315,74979223,74981786,74985079,75020581,75021125,75021880	74843478,74960078,74969775,74970101,74972639,74976330,74977437,74979339,74981928,74985241,75020813,75021285,75022125	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chrX	100646393	100646396	100646395	+	High_confidence	4	7	8	0.438537	2.521641	chrX	100646416	100646572	LINE|CR1|L3b	+	chrX	100646322	100666884	SRPX2|ENST00000638458.1	+	100646322,100650784,100662151,100664773,100665242,100665535,100666753	100646404,100650865,100662367,100664950,100665369,100665657,100666884	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	225600327	225600364	225600327	-	RAMPAGE_only	2	2	8	0.438537	2.500000	chr1	225600252	225600392	SINE|Alu|AluJb	+	chr1	225519197	225580257	ENAH|ENST00000391874.2	-	225519197,225530553,225554905,225567248,225580166	225519565,225530638,225555083,225567414,225580257	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr14	91462180	91462210	91462209	-	High_confidence	6	7	19	1.041526	4.037401	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.947368
esophagus_muscularis_mucosa_female_adult_51_years	chrX	147937583	147937584	147937583	+	RAMPAGE_only	9	9	13	0.712623	2.719295	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.615385
esophagus_muscularis_mucosa_female_adult_51_years	chr17	76677033	76677106	76677033	-	RAMPAGE_only	2	2	20	1.096343	3.932138	chr17	76677010	76677308	SINE|Alu|AluSx	+	chr17	76672550	76710955	MXRA7|ENST00000355797.7	-	76672550,76685071,76688112,76710604	76677702,76685165,76688176,76710955	0.950000
esophagus_muscularis_mucosa_female_adult_51_years	chr7	134432435	134432451	134432435	-	High_confidence	11	11	20	1.096343	3.260828	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.950000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	48421693	48421694	48421693	-	RAMPAGE_only	9	9	14	0.767440	3.334679	chr3	48421525	48421664	SINE|MIR|MIRb	-	chr3	48403853	48429463	PLXNB1|NM_002673.5	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48429252	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48429463	0.928571
esophagus_muscularis_mucosa_female_adult_51_years	chr8	38745153	38745161	38745160	+	RAMPAGE_only	3	3	8	0.438537	2.521641	chr8	38745147	38745506	LINE|L1|L1MEa	+	chr8	38728639	38848132	TACC1|ENST00000518415.5	+	38728639,38742350,38744894,38788703,38819521,38825307,38827167,38831124,38836161,38838469,38840223,38842286,38843288,38846698,38847954	38728671,38742451,38745493,38788819,38820635,38825368,38827288,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848132	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr16	27333283	27333288	27333283	+	RAMPAGE_only	5	5	10	0.548172	2.947703	chr16	27333168	27333399	LINE|CR1|L3	-	chr16	27340203	27364777	STRG.86386.4	+	27340203,27342120,27344868,27345373,27346466,27352539,27355807,27358915,27360765,27362251	27340273,27342259,27345020,27345789,27346618,27352696,27355907,27358994,27360815,27364777	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	73072193	73072226	73072193	-	High_confidence	2	3	16	0.877075	3.500000	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr15	65244449	65244455	65244454	-	RAMPAGE_only	26	27	45	2.466773	4.596382	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.933333
esophagus_muscularis_mucosa_female_adult_51_years	chr17	40191756	40191761	40191760	-	RAMPAGE_only	6	9	16	0.877075	3.056565	chr17	40191739	40191838	DNA|hAT-Tip100|MER91A	-	chr17	40190226	40190683	STRG.89955.1	-	40190226	40190683	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr14	50756790	50756809	50756790	-	RAMPAGE_only	6	6	15	0.822258	3.182006	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.933333
esophagus_muscularis_mucosa_female_adult_51_years	chr1	24151504	24151543	24151504	+	High_confidence	8	11	27	1.480064	4.102679	chr1	24151159	24151642	LTR|ERV1|LTR10D	-	chr1	24151514	24151739	STRG.1115.1	+	24151514	24151739	0.592593
esophagus_muscularis_mucosa_female_adult_51_years	chr5	172958912	172958919	172958918	+	High_confidence	13	14	21	1.151161	3.403989	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.904762
esophagus_muscularis_mucosa_female_adult_51_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	10	10	10	0.548172	3.321928	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	48529375	48529392	48529375	+	High_confidence	26	26	59	3.234213	4.962903	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	0.813559
esophagus_muscularis_mucosa_female_adult_51_years	chr19	9140390	9140428	9140393	+	High_confidence	62	62	170	9.318919	5.885093	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.876471
esophagus_muscularis_mucosa_female_adult_51_years	chr19	11356802	11356803	11356802	+	High_confidence	9	9	13	0.712623	3.084963	chr19	11356842	11356927	SINE|MIR|MIRc	+	chr19	11357695	11359894	PLPPR2|ENST00000588196.1	+	11357695,11359531	11357739,11359894	0.846154
esophagus_muscularis_mucosa_female_adult_51_years	chr20	38985964	38985984	38985964	+	RAMPAGE_only	12	12	41	2.247504	4.804508	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.951220
esophagus_muscularis_mucosa_female_adult_51_years	chr18	7946878	7946898	7946878	+	High_confidence	8	8	17	0.931892	3.734522	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.764706
esophagus_muscularis_mucosa_female_adult_51_years	chr7	99410041	99410057	99410041	+	High_confidence	2	2	6	0.328903	2.584963	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.833333
esophagus_muscularis_mucosa_female_adult_51_years	chr6	79631425	79631468	79631441	+	High_confidence	4	4	14	0.767440	3.392747	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.928571
esophagus_muscularis_mucosa_female_adult_51_years	chr21	45134715	45134741	45134716	+	High_confidence	3	5	15	0.822258	3.240224	chr21	45134610	45134741	LINE|L1|L1M	+	chr21	45134795	45226559	ADARB1|ENST00000629643.2	+	45134795,45171609,45175729,45180329,45182584,45183361,45184922,45204554,45220835,45222017,45225546	45134832,45171684,45176664,45180444,45182753,45183510,45185091,45204736,45221014,45223577,45226559	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr9	121313981	121314021	121314020	+	RAMPAGE_only	175	181	644	35.302256	5.874585	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.996894
esophagus_muscularis_mucosa_female_adult_51_years	chr5	149423244	149423295	149423292	+	RAMPAGE_only	5	5	30	1.644515	3.994680	chr5	149423272	149423349	LINE|L2|L2b	-	chr5	149406878	149428678	CARMN|ENST00000602964.1	+	149406878,149420480	149407078,149428678	0.933333
esophagus_muscularis_mucosa_female_adult_51_years	chr1	201877258	201877285	201877275	+	RAMPAGE_only	3	3	12	0.657806	3.277613	chr1	201877218	201877473	SINE|Alu|AluSz	+	chr1	201829159	201884294	IPO9|NM_018085.4	+	201829159,201847278,201847551,201848392,201852103,201853010,201854594,201854822,201855123,201855782,201857095,201858446,201858854,201863447,201866732,201868647,201869589,201870582,201871160,201872827,201874249,201874831,201875151,201875943	201829372,201847340,201847638,201848594,201852192,201853097,201854714,201854923,201855182,201855934,201857194,201858553,201858994,201863607,201866959,201868796,201869718,201870858,201871327,201872961,201874372,201874936,201875228,201884294	0.916667
esophagus_muscularis_mucosa_female_adult_51_years	chr2	10844420	10844423	10844420	+	High_confidence	6	6	10	0.548172	2.921928	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844242	10885118	STRG.10494.3	+	10844242,10884833	10844832,10885118	0.800000
esophagus_muscularis_mucosa_female_adult_51_years	chr15	90420204	90420205	90420204	+	RAMPAGE_only	4	4	7	0.383720	2.807355	chr15	90420174	90420357	SINE|MIR|MIRb	-	chr15	90388246	90500854	IQGAP1|ENST00000633485.1	+	90388246,90390773,90426109,90429588,90433718,90439331,90440501,90441505,90443393,90448572,90449558,90452774,90453131,90454427,90456151,90466000,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90482701,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390873,90426266,90429666,90433795,90439399,90440615,90441684,90443478,90448736,90449643,90452938,90453292,90454552,90456315,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90482749,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500854	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr8	144106344	144106383	144106364	+	High_confidence	5	6	25	1.370429	3.939471	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.640000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	155343321	155343387	155343321	-	RAMPAGE_only	21	22	64	3.508299	4.950829	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.953125
esophagus_muscularis_mucosa_female_adult_51_years	chr15	98017769	98017790	98017773	-	High_confidence	23	23	77	4.220922	5.646339	chr15	98016264	98017842	LINE|L2|L2a	+	chr15	98014380	98017799	STRG.85064.3	-	98014380	98017799	0.831169
esophagus_muscularis_mucosa_female_adult_51_years	chr2	171555675	171555702	171555701	+	RAMPAGE_only	4	4	15	0.822258	3.323231	chr2	171555665	171555905	SINE|MIR|MIR	-	chr2	171522476	171557646	CYBRD1|ENST00000375252.3	+	171522476,171553345,171554523	171522738,171553500,171557646	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr9	113484732	113484733	113484732	+	RAMPAGE_only	14	19	19	1.041526	4.142664	chr9	113484629	113484751	SINE|MIR|MIR	+	chr9	113501426	113597738	RGS3|ENST00000343817.9	+	113501426,113505441,113506387,113507286,113508540,113514457,113517540,113522929,113529220,113536795,113583449,113591332,113594429,113594918,113595598,113596767	113501630,113505523,113506493,113507638,113508580,113514654,113517624,113523041,113529264,113536918,113584427,113591397,113594531,113594980,113595765,113597738	0.578947
esophagus_muscularis_mucosa_female_adult_51_years	chrX	132281480	132281497	132281480	+	RAMPAGE_only	5	5	14	0.767440	3.392747	chrX	132281407	132283108	DNA|TcMar-Tigger|Tigger1	+	chrX	132278002	132283058	STRG.107273.3	+	132278002,132281094	132278243,132283058	0.928571
esophagus_muscularis_mucosa_female_adult_51_years	chr11	307580	307581	307580	-	RAMPAGE_only	7	7	7	0.383720	2.807355	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	0.714286
esophagus_muscularis_mucosa_female_adult_51_years	chr4	158173024	158173025	158173024	-	High_confidence	125	129	171	9.373736	6.091005	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.976608
esophagus_muscularis_mucosa_female_adult_51_years	chr5	43583511	43583527	43583526	-	RAMPAGE_only	5	5	9	0.493355	2.750000	chr5	43583213	43583828	LTR|ERV1|MER39B	-	chr5	43571593	43577533	STRG.33683.3	-	43571593,43572779	43571971,43577533	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chr6	108960936	108960939	108960936	+	RAMPAGE_only	5	5	9	0.493355	2.725481	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108848421	108973983	ARMC2|ENST00000392644.8	+	108848421,108854224,108858198,108868823,108876142,108894466,108899693,108904229,108910898,108912334,108928087,108936899,108953032,108961571,108962013,108964179,108964979,108973356	108848546,108854485,108858271,108868995,108876350,108894543,108899792,108904405,108911001,108912558,108928233,108936999,108953351,108961694,108962127,108964312,108965140,108973983	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr4	39824174	39824175	39824174	-	RAMPAGE_only	6	7	9	0.493355	2.750000	chr4	39824078	39824174	DNA|TcMar-Tigger|Tigger19b	+	chr4	39822862	39977956	PDS5A|NM_001100399.1	-	39822862,39837855,39841947,39844655,39845817,39848850,39849519,39862218,39862868,39863335,39866860,39869393,39872985,39874288,39876992,39879727,39890248,39898388,39898776,39900425,39902346,39904039,39908394,39910243,39913610,39917047,39920318,39922621,39925835,39926774,39927960,39976439,39977456	39825488,39838208,39842056,39844801,39845880,39848970,39849652,39862333,39863073,39863459,39866997,39869462,39873144,39874412,39877153,39879833,39890364,39898528,39898825,39900507,39902460,39904191,39908540,39910338,39913726,39917188,39920399,39922748,39925933,39926861,39928164,39976617,39977956	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chr17	68248568	68248569	68248568	+	High_confidence	5	6	7	0.383720	2.521641	chr17	68248543	68248580	LINE|L2|L2c	-	chr17	68248534	68256926	AMZ2|ENST00000585050.5	+	68248534,68249010,68250359,68250793,68251049,68256813	68248705,68249096,68250470,68250967,68251178,68256926	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr6	39864996	39865071	39865070	+	RAMPAGE_only	12	20	59	3.234213	5.119600	chr6	39865016	39865115	DNA|TcMar-Tigger|Tigger19b	-	chr6	39867312	39868879	DAAM2|ENST00000632657.1	+	39867312	39868879	0.644068
esophagus_muscularis_mucosa_female_adult_51_years	chr2	70257706	70257707	70257706	+	High_confidence	7	7	7	0.383720	2.521641	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr7	107580245	107580267	107580245	+	High_confidence	934	938	4348	238.345048	6.849082	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.960672
esophagus_muscularis_mucosa_female_adult_51_years	chr16	67571153	67571213	67571153	+	High_confidence	2	2	15	0.822258	2.896292	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.933333
esophagus_muscularis_mucosa_female_adult_51_years	chr10	65570512	65570522	65570521	+	High_confidence	4	7	15	0.822258	3.773557	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.733333
esophagus_muscularis_mucosa_female_adult_51_years	chrX	81262650	81262677	81262650	+	RAMPAGE_only	6	6	11	0.602989	2.646439	chrX	81262192	81262806	LINE|L1|L1MD3	+	chrX	81202629	81297591	SH3BGRL|ENST00000463546.5	+	81202629,81276983,81278330,81297194	81202720,81277169,81278411,81297591	0.818182
esophagus_muscularis_mucosa_female_adult_51_years	chr6	108960797	108960828	108960797	+	RAMPAGE_only	6	6	15	0.822258	3.378783	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108959459	108965117	ARMC2|ENST00000481850.1	+	108959459,108961571,108962013,108964179,108964979	108959519,108961694,108962127,108964312,108965117	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr15	40894523	40894539	40894523	+	High_confidence	2	2	7	0.383720	2.584963	chr15	40894565	40894630	LINE|CR1|X6A_LINE	+	chr15	40894466	40902861	VPS18|ENST00000558474.1	+	40894466,40895937,40898906,40902615	40894859,40896079,40898998,40902861	0.714286
esophagus_muscularis_mucosa_female_adult_51_years	chr2	86556642	86556669	86556668	-	RAMPAGE_only	3	3	8	0.438537	2.807355	chr2	86556435	86556899	LTR|ERVK|LTR22C0	+	chr2	86505774	86563166	CHMP3|ENST00000393773.7	-	86505774,86507478,86510357,86529217,86542251,86563092	86505949,86507593,86510479,86529397,86542312,86563166	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr17	32479860	32479875	32479860	+	High_confidence	3	3	7	0.383720	2.521641	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr19	48868473	48868482	48868481	-	High_confidence	4	4	8	0.438537	2.500000	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868454	PLEKHA4|ENST00000355496.9	-	48837096,48838016,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868454	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr8	30508157	30508190	30508189	+	RAMPAGE_only	21	21	66	3.617933	5.187910	chr8	30507969	30508353	LTR|ERVL-MaLR|MLT1B	+	chr8	30479329	30570757	STRG.52444.8	+	30479329,30504285,30544493,30545344,30558886,30566256,30570636	30479377,30504436,30545220,30556794,30558956,30566360,30570757	0.575758
esophagus_muscularis_mucosa_female_adult_51_years	chr2	219425186	219425187	219425186	+	RAMPAGE_only	25	25	27	1.480064	4.323856	chr2	219424901	219425196	SINE|Alu|AluSg	-	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	0.925926
esophagus_muscularis_mucosa_female_adult_51_years	chr16	50637401	50637431	50637401	+	RAMPAGE_only	2	2	12	0.657806	3.277613	chr16	50637284	50637580	SINE|Alu|AluSx	+	chr16	50548329	50649249	NKD1|ENST00000268459.5	+	50548329,50548716,50549421,50608293,50621601,50625484,50630185,50630825,50632280,50633191	50548578,50548749,50549555,50608360,50621708,50625580,50630333,50630910,50632408,50649249	0.916667
esophagus_muscularis_mucosa_female_adult_51_years	chr11	119046431	119046464	119046463	-	RAMPAGE_only	3	3	7	0.383720	2.807355	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr1	116390239	116390240	116390239	+	RAMPAGE_only	6	6	8	0.438537	3.000000	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chrX	136168194	136168209	136168194	+	High_confidence	13	13	23	1.260795	3.675311	chrX	136168049	136168241	SINE|MIR|MIR	-	chrX	136168193	136208575	FHL1|ENST00000434885.5	+	136168193,136169906,136206406,136207015,136207791,136208454	136168267,136169980,136206588,136207190,136207961,136208575	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr9	35657466	35657488	35657487	+	High_confidence	6	6	21	1.151161	3.748995	chr9	35657503	35657740	SINE|Alu|AluJb	+	chr9	35658289	35661503	CCDC107|NM_174923.2	+	35658289,35658575,35660400,35660556,35660745	35658485,35658727,35660461,35660647,35661503	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr10	122127024	122127025	122127024	+	High_confidence	12	13	16	0.877075	3.702820	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.687500
esophagus_muscularis_mucosa_female_adult_51_years	chr12	46266488	46266516	46266515	-	High_confidence	8	12	33	1.808967	4.016632	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.939394
esophagus_muscularis_mucosa_female_adult_51_years	chr7	102822458	102822461	102822458	-	RAMPAGE_only	3	4	8	0.438537	2.807355	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	28347653	28347664	28347653	-	High_confidence	7	7	12	0.657806	3.095795	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.916667
esophagus_muscularis_mucosa_female_adult_51_years	chr5	176411456	176411459	176411458	-	RAMPAGE_only	6	8	10	0.548172	2.947703	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.800000
esophagus_muscularis_mucosa_female_adult_51_years	chrX	103577211	103577212	103577211	+	High_confidence	15	22	22	1.205978	4.004886	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	198253786	198253787	198253786	+	RAMPAGE_only	5	5	8	0.438537	2.500000	chr2	198253767	198253887	LTR|ERVL-MaLR|THE1B	+	chr2	198346828	198572581	PLCL1|ENST00000472193.1	+	198346828,198355294,198387852,198571353,198571855	198346907,198355407,198388005,198571477,198572581	0.750000
esophagus_muscularis_mucosa_female_adult_51_years	chr15	57451528	57451563	57451562	+	RAMPAGE_only	11	11	28	1.534881	3.530964	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.928571
esophagus_muscularis_mucosa_female_adult_51_years	chr10	4205665	4205677	4205668	-	RAMPAGE_only	11	15	32	1.754149	4.256565	chr10	4205462	4205629	DNA|hAT-Tip100|MamTip2	-	chr10	4201140	4243912	LINC00702|ENST00000608792.1	-	4201140,4243503,4243822	4207166,4243687,4243912	0.937500
esophagus_muscularis_mucosa_female_adult_51_years	chr12	124355437	124355448	124355447	-	RAMPAGE_only	8	10	15	0.822258	3.039149	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124324415	124422554	NCOR2|ENST00000356219.7	-	124324415,124326190,124327408,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124398118,124400500,124402403,124419956,124422500	124325583,124326370,124327633,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362297,124363799,124372610,124374463,124378384,124385887,124398181,124400673,124402561,124420055,124422554	0.933333
esophagus_muscularis_mucosa_female_adult_51_years	chr16	63618044	63618046	63618044	-	High_confidence	5	10	11	0.602989	3.121928	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.636364
esophagus_muscularis_mucosa_female_adult_51_years	chr19	46736149	46736150	46736149	-	High_confidence	6	6	6	0.328903	2.584963	chr19	46735991	46736300	SINE|Alu|AluSz	+	chr19	46728686	46736349	STRN4|ENST00000602397.5	-	46728686,46730731,46733038,46736149	46728777,46730873,46733236,46736349	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr11	86395112	86395137	86395112	+	High_confidence	3	4	9	0.493355	3.000000	chr11	86395046	86395200	DNA|TcMar-Mariner|MARNA	+	chr11	86395173	86423109	CCDC81|ENST00000528728.1	+	86395173,86397620,86400677,86407613,86409260,86412386,86414788,86415092,86419927,86422573	86395413,86397742,86400801,86407701,86409365,86412559,86414867,86415313,86420053,86423109	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr3	58136122	58136155	58136154	+	RAMPAGE_only	4	4	12	0.657806	3.277613	chr3	58136192	58136456	SINE|MIR|MIRb	+	chr3	58132077	58172251	FLNB|ENST00000481470.5	+	58132077,58134615,58135978,58138281,58142649,58143472,58145920,58146819,58148205,58148648,58149849,58150104,58153374,58154790,58155959,58159553,58163153,58168439,58170574	58132931,58134772,58136168,58138529,58142752,58143613,58146049,58146993,58148364,58148852,58150002,58150227,58153641,58154928,58156075,58159686,58163330,58169793,58172251	0.583333
esophagus_muscularis_mucosa_female_adult_51_years	chr2	187461965	187461966	187461965	+	RAMPAGE_only	11	12	12	0.657806	3.277613	chr2	187461411	187462268	LTR|ERV1|LTR1A2	+	chr2	187003273	187554393	AC007319.1|ENST00000412276.5	+	187003273,187191834,187499505,187546728,187547077,187547482,187554275	187003365,187191931,187499605,187546839,187547163,187547707,187554393	0.583333
esophagus_muscularis_mucosa_female_adult_51_years	chr19	40608576	40608592	40608591	+	RAMPAGE_only	15	15	25	1.370429	4.053509	chr19	40608638	40608924	SINE|Alu|AluSq2	+	chr19	40610212	40611922	LTBP4|ENST00000598256.1	+	40610212,40611151,40611858	40610657,40611394,40611922	0.720000
esophagus_muscularis_mucosa_female_adult_51_years	chr4	4269605	4269614	4269613	-	High_confidence	6	6	15	0.822258	2.923231	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr16	11587465	11587487	11587486	-	High_confidence	6	6	15	0.822258	3.039149	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.933333
esophagus_muscularis_mucosa_female_adult_51_years	chr8	27977120	27977126	27977125	-	RAMPAGE_only	50	58	107	5.865437	5.139310	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.841121
esophagus_muscularis_mucosa_female_adult_51_years	chr10	95437800	95437816	95437815	-	RAMPAGE_only	76	78	160	8.770747	5.945642	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	9986881	9986916	9986915	+	High_confidence	4	4	12	0.657806	3.584963	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986910	10005244	EMC3-AS1|ENST00000326237.3	+	9986910,10002716	9987264,10005244	0.583333
esophagus_muscularis_mucosa_female_adult_51_years	chr20	50172537	50172590	50172589	+	High_confidence	6	7	15	0.822258	3.506891	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172589	50176671	LINC01273|ENST00000411453.2	+	50172589,50172922,50176280	50172788,50173017,50176671	0.600000
esophagus_muscularis_mucosa_female_adult_51_years	chr10	59303176	59303189	59303176	-	RAMPAGE_only	2	3	10	0.548172	3.169925	chr10	59302952	59303486	LINE|L2|L2a	+	chr10	59268591	59270321	FAM13C|ENST00000507568.1	-	59268591,59269898	59268691,59270321	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr20	44738989	44738993	44738992	-	High_confidence	4	4	10	0.548172	3.121928	chr20	44738735	44739078	LTR|ERVL-MaLR|MLT1J2	-	chr20	44694891	44738896	KCNK15-AS1|ENST00000427598.5	-	44694891,44716624,44738819	44695507,44716793,44738896	0.600000
esophagus_muscularis_mucosa_female_adult_51_years	chr13	46711820	46711841	46711840	+	RAMPAGE_only	10	12	25	1.370429	4.023465	chr13	46711708	46711858	LINE|L1|X9_LINE	-	chr13	46553259	46742733	LRCH1|ENST00000389797.7	+	46553259,46650200,46669029,46681740,46685904,46687851,46689132,46692535,46694892,46699335,46701120,46705067,46705267,46711790,46712524,46715559,46723220,46728846,46733920,46741641	46553703,46650345,46669156,46681846,46686041,46687979,46689196,46692641,46695017,46699403,46701207,46705157,46705304,46711844,46712597,46715664,46723330,46728984,46733998,46742733	0.600000
esophagus_muscularis_mucosa_female_adult_51_years	chr16	27286227	27286249	27286227	+	High_confidence	2	2	8	0.438537	2.807355	chr16	27285896	27286308	LTR|ERVL-MaLR|MLT1G	-	chr16	27286656	27290492	FLJ21408|ENST00000566535.1	+	27286656,27290244	27286744,27290492	0.625000
esophagus_muscularis_mucosa_female_adult_51_years	chr4	189722280	189722291	189722290	-	RAMPAGE_only	7	7	19	1.041526	4.037401	chr4	189721949	189722303	LINE|L1|L1M3b	+	chr4	189708137	189708588	STRG.32587.1	-	189708137	189708588	0.578947
esophagus_muscularis_mucosa_female_adult_51_years	chr2	217909736	217909748	217909736	-	RAMPAGE_only	4	4	10	0.548172	3.121928	chr2	217909603	217909688	DNA|hAT-Charlie|MER5A	-	chr2	217848883	217905461	TNS1|ENST00000413554.5	-	217848883,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217905295	217849087,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217905461	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr16	15006394	15006419	15006394	+	RAMPAGE_only	10	12	25	1.370429	3.938722	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.720000
esophagus_muscularis_mucosa_female_adult_51_years	chr5	81473699	81473759	81473699	-	RAMPAGE_only	4	4	18	0.986709	3.616875	chr5	81473245	81473683	LINE|L1|L1PA8	-	chr5	81419978	81448063	SSBP2|ENST00000510060.5	-	81419978,81428584,81437429,81440557,81442652,81446867,81447909	81420533,81428683,81437458,81440636,81442723,81446922,81448063	0.833333
esophagus_muscularis_mucosa_female_adult_51_years	chr1	166850222	166850294	166850246	+	RAMPAGE_only	4	4	25	1.370429	4.055958	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166845485	166854473	STRG.6674.6	+	166845485,166847493,166848937,166849787	166846738,166847592,166849733,166854473	0.920000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	202551728	202551798	202551797	+	RAMPAGE_only	11	15	69	3.782385	5.553964	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.579710
esophagus_muscularis_mucosa_female_adult_51_years	chr1	205012799	205012863	205012799	+	RAMPAGE_only	3	3	17	0.931892	3.734522	chr1	205012785	205012855	LINE|CR1|L3	+	chr1	205008444	205021031	NFASC|ENST00000503221.1	+	205008444,205012796,205016307	205009688,205012866,205021031	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr11	11963743	11963828	11963752	-	RAMPAGE_only	7	7	74	4.056470	5.092277	chr11	11963694	11963925	SINE|MIR|MIRc	+	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.986486
esophagus_muscularis_mucosa_female_adult_51_years	chr6	111606231	111606277	111606276	-	High_confidence	5	5	15	0.822258	3.773557	chr6	111606274	111606582	SINE|Alu|AluY	+	chr6	111555377	111606274	TRAF3IP2|NM_147686.3	-	111555377,111562964,111566443,111567623,111572894,111575642,111580196,111591257,111605775	111559551,111563039,111566560,111567692,111572983,111575821,111580389,111592094,111606274	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr11	3380960	3380961	3380960	+	High_confidence	10	10	10	0.548172	3.121928	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.600000
esophagus_muscularis_mucosa_female_adult_51_years	chr20	3795750	3795789	3795750	+	High_confidence	39	41	208	11.401971	5.953281	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.990385
esophagus_muscularis_mucosa_female_adult_51_years	chr11	71999605	71999642	71999614	+	High_confidence	22	35	109	5.975071	5.316931	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.926606
esophagus_muscularis_mucosa_female_adult_51_years	chrX	19349983	19350025	19350021	+	RAMPAGE_only	3	4	21	1.151161	4.297079	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19343932	19361685	PDHA1|ENST00000422285.6	+	19343932,19349311,19349936,19351280,19353081,19354490,19355348,19355685,19357651,19358915,19359488	19344094,19349371,19350110,19351407,19353173,19354583,19355504,19355757,19357719,19359024,19361685	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr8	117764549	117764555	117764549	+	RAMPAGE_only	9	9	18	0.986709	3.572431	chr8	117764354	117764720	LTR|ERVL-MaLR|THE1B	+	chr8	117769378	117769701	STRG.54793.1	+	117769378	117769701	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chr16	74485795	74485814	74485813	-	RAMPAGE_only	6	6	10	0.548172	2.921928	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	0.900000
esophagus_muscularis_mucosa_female_adult_51_years	chr4	152412494	152412529	152412528	-	High_confidence	10	12	30	1.644515	4.189898	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	155679929	155679930	155679929	-	High_confidence	10	11	12	0.657806	2.913977	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	0.916667
esophagus_muscularis_mucosa_female_adult_51_years	chr7	6590246	6590275	6590246	+	High_confidence	3	3	14	0.767440	3.546594	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	159920329	159920341	159920338	-	RAMPAGE_only	6	6	15	0.822258	3.378783	chr1	159920065	159920288	LINE|CR1|L3b	-	chr1	159918106	159923717	TAGLN2|NM_001277224.1	-	159918106,159919273,159919660,159920329,159923435	159918941,159919376,159919835,159920537,159923717	0.933333
esophagus_muscularis_mucosa_female_adult_51_years	chr1	202582563	202582572	202582563	+	RAMPAGE_only	7	7	15	0.822258	3.467720	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.866667
esophagus_muscularis_mucosa_female_adult_51_years	chr4	173369515	173369534	173369515	-	High_confidence	2	2	8	0.438537	2.807355	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr4	119059056	119059323	119059056	+	RAMPAGE_only	15	16	241	13.210938	5.617329	chr4	119058963	119059058	SINE|MIR|MIR3	+	chr4	119023470	119061247	SYNPO2|ENST00000504178.1	+	119023470,119026626,119029844,119057400	119023581,119027438,119031853,119061247	0.995851
esophagus_muscularis_mucosa_female_adult_51_years	chr3	69237176	69237183	69237182	-	RAMPAGE_only	5	5	16	0.877075	3.452820	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	231422748	231422749	231422748	-	RAMPAGE_only	5	5	8	0.438537	2.521641	chr1	231422714	231422871	SINE|MIR|MIRb	-	chr1	231363750	231425044	EGLN1|ENST00000366641.3	-	231363750,231367568,231370561,231373979,231420997	231366475,231367636,231370698,231374099,231425044	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr14	50756863	50756880	50756879	-	RAMPAGE_only	3	4	8	0.438537	2.521641	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr8	86417214	86417236	86417235	+	High_confidence	7	8	16	0.877075	3.875000	chr8	86417268	86417372	DNA|hAT-Charlie|MER58D	+	chr8	86417222	86431665	WWP1|ENST00000521079.1	+	86417222,86425222,86427642,86430696,86431405,86431614	86417279,86425318,86427817,86430751,86431490,86431665	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr19	48868595	48868617	48868595	-	High_confidence	477	498	1826	100.096149	7.640228	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.993976
esophagus_muscularis_mucosa_female_adult_51_years	chr20	50267474	50267494	50267474	+	High_confidence	7	8	27	1.480064	4.209867	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.962963
esophagus_muscularis_mucosa_female_adult_51_years	chr18	46087007	46087061	46087042	-	High_confidence	6	6	16	0.877075	3.773557	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.562500
esophagus_muscularis_mucosa_female_adult_51_years	chr14	102947722	102947763	102947722	-	RAMPAGE_only	2	2	18	0.986709	3.836592	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.611111
esophagus_muscularis_mucosa_female_adult_51_years	chrX	73837439	73837494	73837439	-	RAMPAGE_only	2	2	12	0.657806	2.688722	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chrX	16712889	16712959	16712889	-	High_confidence	6	6	21	1.151161	4.106603	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.952381
esophagus_muscularis_mucosa_female_adult_51_years	chr15	75879161	75879162	75879161	+	High_confidence	13	17	17	0.931892	3.572469	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75878185	75897062	UBE2Q2|ENST00000563966.1	+	75878185,75879097,75883365,75890434,75890918,75896994	75878360,75879188,75883424,75890483,75891014,75897062	0.647059
esophagus_muscularis_mucosa_female_adult_51_years	chr5	109383497	109383500	109383497	-	High_confidence	2	3	7	0.383720	2.584963	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr1	155478037	155478062	155478043	-	RAMPAGE_only	11	11	25	1.370429	4.088779	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.840000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	238771438	238771467	238771466	+	High_confidence	2	2	6	0.328903	2.584963	chr2	238771205	238771476	LINE|L1|L1MB3	+	chr2	238771495	238799462	STRG.18917.1	+	238771495,238799376	238771885,238799462	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr7	40046019	40046020	40046019	+	RAMPAGE_only	6	6	8	0.438537	2.500000	chr7	40046066	40046260	LINE|L1|L1PA17	+	chr7	40059214	40093168	CDK13|ENST00000478563.2	+	40059214,40062825,40063022,40078004,40078719,40088125,40092964	40059279,40062927,40063100,40078121,40078851,40088331,40093168	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr6	79631273	79631329	79631302	+	High_confidence	289	291	1094	59.969982	6.686684	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.980804
esophagus_muscularis_mucosa_female_adult_51_years	chr7	154928503	154928504	154928503	+	High_confidence	8	8	10	0.548172	2.921928	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.800000
esophagus_muscularis_mucosa_female_adult_51_years	chr9	92536701	92536714	92536703	-	High_confidence	10	12	19	1.041526	3.836592	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.842105
esophagus_muscularis_mucosa_female_adult_51_years	chr9	122164568	122164596	122164595	+	High_confidence	23	31	61	3.343847	5.215061	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122164614	122174568	MORN5|ENST00000418632.1	+	122164614,122166767,122169644,122174495	122164647,122166915,122169756,122174568	0.573770
esophagus_muscularis_mucosa_female_adult_51_years	chr8	97719137	97719183	97719182	+	RAMPAGE_only	10	10	40	2.192687	4.701944	chr8	97719213	97719522	SINE|Alu|AluSx1	+	chr8	97644545	97725243	MTDH|ENST00000519934.5	+	97644545,97661071,97686667,97687428,97689037,97690951,97706625,97713661,97719048,97722878,97724599	97644887,97661173,97686752,97687605,97689103,97691188,97706750,97713769,97719189,97723035,97725243	0.975000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	65550484	65550504	65550503	+	RAMPAGE_only	3	4	7	0.383720	2.521641	chr1	65544806	65550970	LINE|L1|L1PA3	-	chr1	65565545	65626234	LEPR|ENST00000371058.1	+	65565545,65570472,65572325,65592656,65596447,65598659,65601391,65601842,65605037,65608752,65609946,65610213,65616007,65617963,65619927,65621352,65622905,65626122	65565605,65570802,65572449,65592865,65596593,65598804,65601682,65601960,65605237,65608901,65610106,65610296,65616224,65618146,65620023,65621458,65622981,65626234	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr4	73144749	73144771	73144752	-	RAMPAGE_only	9	10	29	1.589698	3.369331	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.965517
esophagus_muscularis_mucosa_female_adult_51_years	chr17	47067498	47067518	47067498	-	High_confidence	375	402	1337	73.290554	5.940909	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.947644
esophagus_muscularis_mucosa_female_adult_51_years	chr3	152267218	152267485	152267410	-	RAMPAGE_only	7	9	134	7.345501	5.434154	chr3	152267213	152267496	LINE|L2|L2c	+	chr3	152262615	152269546	STRG.24879.4	-	152262615	152269546	0.985075
esophagus_muscularis_mucosa_female_adult_51_years	chr11	12528477	12528496	12528477	+	RAMPAGE_only	3	3	12	0.657806	3.418296	chr11	12528448	12528541	LINE|L1|L1ME3	-	chr11	12377478	12535356	PARVA|ENST00000649199.1	+	12377478,12473744,12473912,12477846,12496457,12504313,12508583,12511513,12513298,12513996,12517609,12518444,12527848	12377783,12473834,12473983,12477949,12496598,12504429,12508642,12511533,12513360,12514065,12517711,12518517,12535356	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr8	53523862	53523964	53523963	-	High_confidence	34	36	128	7.016598	6.259321	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.984375
esophagus_muscularis_mucosa_female_adult_51_years	chr20	4800985	4800997	4800985	-	RAMPAGE_only	3	3	11	0.602989	2.845351	chr20	4800953	4801009	DNA|hAT-Ac|OldhAT1	-	chr20	4780022	4795504	RASSF2|ENST00000478553.1	-	4780022,4786230,4787632,4788216,4789595,4790450,4792538,4792993,4795255	4784342,4786328,4787701,4788268,4789697,4790611,4792627,4793054,4795504	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr21	45184516	45184568	45184516	+	RAMPAGE_only	14	15	28	1.534881	4.680813	chr21	45184448	45184750	SINE|Alu|AluJb	-	chr21	45171641	45226560	ADARB1|ENST00000360697.4	+	45171641,45175729,45180329,45182584,45183361,45184473,45184922,45204554,45220835,45222017	45171684,45176664,45180444,45182753,45183510,45184593,45185091,45204736,45221014,45226560	0.785714
esophagus_muscularis_mucosa_female_adult_51_years	chr3	52615352	52615427	52615426	-	High_confidence	13	15	35	1.918601	4.318868	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.885714
esophagus_muscularis_mucosa_female_adult_51_years	chr17	8310240	8310241	8310240	+	High_confidence	6	6	7	0.383720	2.584963	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr12	12927708	12927734	12927733	+	High_confidence	5	5	13	0.712623	3.392747	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.692308
esophagus_muscularis_mucosa_female_adult_51_years	chr2	219419787	219419853	219419848	+	High_confidence	3	3	17	0.931892	3.969816	chr2	219419757	219419880	LINE|L2|L2b	-	chr2	219420044	219423820	DES|ENST00000477226.5	+	219420044,219420250,219420494,219420827,219421339,219423776	219420155,219420346,219420656,219420953,219421560,219423820	0.588235
esophagus_muscularis_mucosa_female_adult_51_years	chr2	86482577	86482619	86482577	+	RAMPAGE_only	12	13	19	1.041526	3.419382	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.684211
esophagus_muscularis_mucosa_female_adult_51_years	chr8	85378112	85378113	85378112	-	High_confidence	10	12	12	0.657806	2.732159	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.916667
esophagus_muscularis_mucosa_female_adult_51_years	chr10	71615177	71615209	71615196	+	RAMPAGE_only	22	22	46	2.521590	4.241527	chr10	71614899	71615319	DNA|hAT-Charlie|MER113	-	chr10	71570794	71716872	CDH23|ENST00000466757.8	+	71570794,71577913,71615503,71617204,71635237,71643860,71645830,71646458,71675111,71677455,71679386,71682444,71687646,71690467,71694146,71695417,71702021,71702548,71704910,71706896,71709097,71712664,71715201	71570918,71577992,71615616,71617393,71635297,71643866,71645980,71646617,71675176,71677693,71679492,71682572,71687719,71690584,71694259,71695525,71702211,71702694,71705130,71707049,71709211,71712813,71716872	0.804348
esophagus_muscularis_mucosa_female_adult_51_years	chr7	158863386	158863410	158863409	+	RAMPAGE_only	7	9	31	1.699332	4.760648	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.806452
esophagus_muscularis_mucosa_female_adult_51_years	chr6	43013379	43013393	43013392	-	High_confidence	15	15	34	1.863784	4.771143	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr19	3667321	3667349	3667348	-	RAMPAGE_only	4	4	14	0.767440	3.378783	chr19	3667202	3667314	SINE|MIR|MIR3	-	chr19	3636600	3700390	PIP5K1C|ENST00000537021.1	-	3636600,3638883,3641704,3642906,3643242,3644086,3645973,3647337,3648624,3651825,3653289,3656404,3660965,3661870,3664821,3667321,3700296	3638006,3639016,3641809,3642939,3643381,3644251,3646058,3647386,3648708,3652031,3653589,3656557,3661083,3662001,3664914,3667353,3700390	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	3536839	3536899	3536872	-	High_confidence	13	15	102	5.591351	5.761291	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531989	3536873	STRG.10319.1	-	3531989,3534112,3536197,3536723	3532310,3534255,3536313,3536873	0.921569
esophagus_muscularis_mucosa_female_adult_51_years	chr7	101217578	101217599	101217578	-	High_confidence	6	6	37	2.028235	4.729283	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.918919
esophagus_muscularis_mucosa_female_adult_51_years	chr7	38789812	38789813	38789812	-	RAMPAGE_only	15	16	20	1.096343	3.984184	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr14	50138615	50138686	50138615	-	RAMPAGE_only	3	3	16	0.877075	3.750000	chr14	50138460	50138574	LINE|L1|L1MA1	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr9	128187884	128187924	128187884	-	RAMPAGE_only	3	4	24	1.315612	3.621176	chr9	128187633	128188001	LINE|L1|L1M5	+	chr9	128180798	128190467	CIZ1|ENST00000474442.1	-	128180798,128185546,128187862,128190328	128180814,128185776,128187934,128190467	0.583333
esophagus_muscularis_mucosa_female_adult_51_years	chr4	147909372	147909399	147909398	+	RAMPAGE_only	2	2	7	0.383720	2.584963	chr4	147908966	147909613	LTR|ERVL|MER21C	-	chr4	147881866	148072775	ARHGAP10|ENST00000507661.1	+	147881866,147906637,147909731,147913073,147939824,147946616,147955315,147965023,147966679,148023262,148046891,148064415,148071992	147881932,147906719,147909777,147913139,147939899,147946704,147955374,147965129,147966839,148023413,148047051,148064507,148072775	0.571429
esophagus_muscularis_mucosa_female_adult_51_years	chr12	9407491	9407516	9407506	-	RAMPAGE_only	21	21	42	2.302321	4.393899	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9401798	9406398	STRG.70502.1	-	9401798,9402426,9406307	9401859,9402553,9406398	0.690476
esophagus_muscularis_mucosa_female_adult_51_years	chr16	27243358	27243371	27243370	-	RAMPAGE_only	6	7	11	0.602989	3.121928	chr16	27243362	27243410	LINE|L2|L2c	+	chr16	27233069	27258151	NSMCE1|ENST00000563900.5	-	27233069,27234187,27235177,27257434,27258083	27233147,27234265,27235299,27257581,27258151	0.636364
esophagus_muscularis_mucosa_female_adult_51_years	chr22	30971751	30971763	30971762	+	High_confidence	3	4	9	0.493355	2.947703	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	188217308	188217329	188217308	+	RAMPAGE_only	14	14	48	2.631224	5.075078	chr3	188216938	188217653	LINE|L2|L2b	-	chr3	188212932	188890671	LPP|NM_005578.4	+	188212932,188225404,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188213046,188225527,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.833333
esophagus_muscularis_mucosa_female_adult_51_years	chr12	47753931	47753948	47753931	+	RAMPAGE_only	4	4	26	1.425246	4.209867	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47758577	47780307	SLC48A1|ENST00000547002.5	+	47758577,47760215,47772169,47779027,47780144	47758660,47760401,47772320,47779195,47780307	0.846154
esophagus_muscularis_mucosa_female_adult_51_years	chr17	40648571	40648584	40648583	-	High_confidence	5	8	18	0.986709	3.572469	chr17	40648546	40648925	LINE|L2|L2b	+	chr17	40625002	40648654	SMARCE1|ENST00000643318.1	-	40625002,40630713,40631591,40632194,40635930,40636394,40637491,40645795,40647772	40628993,40630924,40631693,40632367,40636102,40636526,40637572,40645847,40648654	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chr22	50785189	50785243	50785227	+	RAMPAGE_only	4	5	29	1.589698	4.134336	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.896552
esophagus_muscularis_mucosa_female_adult_51_years	chr17	19386319	19386397	19386334	-	High_confidence	31	36	69	3.782385	5.445761	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.956522
esophagus_muscularis_mucosa_female_adult_51_years	chr8	30812339	30812454	30812453	-	High_confidence	13	13	78	4.275739	5.386599	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.987179
esophagus_muscularis_mucosa_female_adult_51_years	chr10	69416601	69416645	69416601	-	High_confidence	5	8	18	0.986709	3.572431	chr10	69416596	69416765	SINE|MIR|MIR3	-	chr10	69404483	69416867	TACR2|ENST00000373306.4	-	69404483,69407083,69408921,69414944,69415931	69405084,69407280,69409075,69415139,69416867	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr10	95493173	95493190	95493179	-	RAMPAGE_only	8	8	25	1.370429	4.243856	chr10	95493013	95493319	SINE|Alu|AluSg	+	chr10	95414743	95482671	SORBS1|ENST00000492542.1	-	95414743,95421960,95432447,95437489,95441125,95482433	95414862,95422073,95432576,95437555,95441180,95482671	0.640000
esophagus_muscularis_mucosa_female_adult_51_years	chr14	73567613	73567641	73567616	+	High_confidence	112	118	321	17.596311	5.998658	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.971963
esophagus_muscularis_mucosa_female_adult_51_years	chr11	123061128	123061328	123061256	-	High_confidence	32	35	205	11.237520	5.506621	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.975610
esophagus_muscularis_mucosa_female_adult_51_years	chr6	43025307	43025319	43025307	+	High_confidence	4	4	12	0.657806	3.277613	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.833333
esophagus_muscularis_mucosa_female_adult_51_years	chr12	50924027	50924051	50924050	+	High_confidence	3	3	10	0.548172	2.921928	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50924004	50929955	METTL7A|ENST00000550502.1	+	50924004,50925036,50929913	50924080,50925536,50929955	0.600000
esophagus_muscularis_mucosa_female_adult_51_years	chr18	36807858	36807870	36807869	-	High_confidence	7	7	14	0.767440	3.664498	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.714286
esophagus_muscularis_mucosa_female_adult_51_years	chr22	49657443	49657464	49657461	-	High_confidence	5	5	17	0.931892	3.030639	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49414523	49657504	C22orf34|ENST00000414287.5	-	49414523,49416601,49416814,49440875,49657404	49416035,49416735,49416928,49441212,49657504	0.529412
esophagus_muscularis_mucosa_female_adult_51_years	chr11	90251204	90251205	90251204	+	High_confidence	7	11	11	0.602989	2.663533	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.818182
esophagus_muscularis_mucosa_female_adult_51_years	chr4	122700441	122700442	122700441	+	RAMPAGE_only	6	6	8	0.438537	3.000000	chr4	122700197	122700669	LTR|ERVL|MER70A	+	chr4	122732701	122744942	BBS12|ENST00000542236.5	+	122732701,122733903,122741882	122732884,122734091,122744942	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	173223088	173223188	173223175	+	RAMPAGE_only	5	5	84	4.604642	4.713048	chr2	173223213	173223451	SINE|MIR|MIR	+	chr2	173075841	173227146	MAP3K20|ENST00000338983.7	+	173075841,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173221149	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173227146	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	57267742	57267782	57267772	+	RAMPAGE_only	8	8	23	1.260795	4.055958	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.826087
esophagus_muscularis_mucosa_female_adult_51_years	chr15	63046776	63046792	63046791	+	RAMPAGE_only	4	4	16	0.877075	3.625000	chr15	63046756	63046919	DNA|hAT-Charlie|MER5B	+	chr15	63042686	63047726	TPM1|ENST00000610733.1	+	63042686,63044026	63042943,63047726	0.937500
esophagus_muscularis_mucosa_female_adult_51_years	chr7	30924580	30924979	30924710	+	RAMPAGE_only	43	47	534	29.272368	6.636032	chr7	30924681	30924730	LINE|RTE-BovB|MamRTE1	+	chr7	30921503	30925516	AQP1|NM_001185062.1	+	30921503,30922065,30922563,30923449	30921624,30922230,30922644,30925516	0.996255
esophagus_muscularis_mucosa_female_adult_51_years	chr15	99098330	99098347	99098330	+	High_confidence	9	10	29	1.589698	4.423252	chr15	99098258	99098383	SINE|MIR|MIRb	-	chr15	99098216	99135593	SYNM|ENST00000560674.5	+	99098216,99113590,99126721,99129366,99132749	99098637,99113715,99126792,99131813,99135593	0.931034
esophagus_muscularis_mucosa_female_adult_51_years	chr2	73908362	73908363	73908362	+	RAMPAGE_only	11	11	11	0.602989	3.095795	chr2	73908047	73908439	LTR|ERVL|LTR33	-	chr2	73893007	73919865	ACTG2|ENST00000409624.1	+	73893007,73896751,73901275,73902359,73908672,73909054,73913484,73914679,73916583,73919431	73893051,73897314,73901437,73902488,73908783,73909139,73913646,73914871,73916765,73919865	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chr4	119058724	119058780	119058754	+	RAMPAGE_only	2	2	9	0.493355	3.169925	chr4	119058464	119058772	SINE|Alu|AluSg	-	chr4	119023470	119061247	SYNPO2|ENST00000504178.1	+	119023470,119026626,119029844,119057400	119023581,119027438,119031853,119061247	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr9	98943307	98943308	98943307	+	High_confidence	5	7	7	0.383720	2.521641	chr9	98943193	98943308	LINE|L2|L2a	-	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	10	10	11	0.602989	2.721928	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chr12	46243235	46243294	46243235	-	RAMPAGE_only	6	7	45	2.466773	4.747191	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.977778
esophagus_muscularis_mucosa_female_adult_51_years	chr4	151687304	151687315	151687304	-	High_confidence	2	2	6	0.328903	2.584963	chr4	151687184	151687573	LINE|L2|L2b	+	chr4	151670943	151687083	GATB|ENST00000507592.5	-	151670943,151672761,151679812,151686907	151671302,151672896,151679891,151687083	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr14	38948236	38948246	38948236	-	High_confidence	5	5	11	0.602989	2.663533	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38838888	38948237	LINC00639|ENST00000556116.1	-	38838888,38941519,38948177	38839204,38941695,38948237	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chr21	45563127	45563153	45563152	-	High_confidence	4	6	11	0.602989	3.321928	chr21	45562422	45564060	LINE|L1|L1MC3	+	chr21	45513775	45562991	STRG.101491.2	-	45513775,45525816,45530769,45531388,45537770,45562741	45516140,45525958,45530971,45532148,45538008,45562991	0.818182
esophagus_muscularis_mucosa_female_adult_51_years	chr8	2727243	2727264	2727243	+	High_confidence	5	5	19	1.041526	3.947703	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.736842
esophagus_muscularis_mucosa_female_adult_51_years	chr12	65464089	65464354	65464089	+	RAMPAGE_only	44	52	341	18.692654	5.761825	chr12	65463992	65464279	SINE|Alu|AluY	+	chr12	65279484	65466868	MSRB3|ENST00000642404.1	+	65279484,65306862,65308528,65326825,65328525,65368997,65453727,65463154	65279517,65307026,65308655,65326934,65328603,65369026,65453825,65466868	0.994135
esophagus_muscularis_mucosa_female_adult_51_years	chr14	44912628	44912646	44912628	-	High_confidence	6	7	15	0.822258	3.378783	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44766218	44912779	STRG.78696.1	-	44766218,44767994,44797929,44831615,44899229,44911756,44912452	44766334,44768129,44798012,44831690,44899313,44911860,44912779	0.800000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	153967486	153967517	153967486	+	High_confidence	24	24	63	3.453482	4.337049	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153974131	STRG.6122.3	+	153967533,153968521,153968929,153969333,153972743,153972971,153973194,153973379,153973619,153973871	153967884,153968699,153969176,153969455,153972836,153973078,153973263,153973464,153973716,153974131	0.904762
esophagus_muscularis_mucosa_female_adult_51_years	chr5	152094525	152094526	152094525	+	RAMPAGE_only	8	8	8	0.438537	2.750000	chr5	152094451	152094593	LINE|L2|L2a	+	chr5	152195447	152270445	LINC01933|ENST00000518431.5	+	152195447,152267264,152270194	152195530,152267355,152270445	0.750000
esophagus_muscularis_mucosa_female_adult_51_years	chr12	21818153	21818205	21818153	-	RAMPAGE_only	2	2	19	1.041526	3.086049	chr12	21817882	21818136	LINE|L1|L1PA8A	-	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	0.947368
esophagus_muscularis_mucosa_female_adult_51_years	chr2	173182183	173182242	173182219	+	RAMPAGE_only	6	7	23	1.260795	3.969002	chr2	173182099	173182382	LINE|L1|L1MB7	+	chr2	173075958	173268010	MAP3K20|ENST00000375213.7	+	173075958,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173229688,173232191,173232319,173238372,173239403,173258698,173261062,173263744,173266049	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173229733,173232222,173232459,173238435,173239496,173258815,173261137,173263895,173268010	0.782609
esophagus_muscularis_mucosa_female_adult_51_years	chr14	32075865	32075884	32075865	+	High_confidence	4	4	15	0.822258	3.323231	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076113	32090780	ARHGAP5|ENST00000555814.1	+	32076113,32076457,32090501	32076217,32076657,32090780	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr21	33931417	33931431	33931430	+	High_confidence	2	2	7	0.383720	2.584963	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr11	64226142	64226180	64226158	-	High_confidence	63	69	376	20.611255	7.206574	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.962766
esophagus_muscularis_mucosa_female_adult_51_years	chr4	87524562	87524579	87524562	-	RAMPAGE_only	21	24	76	4.166105	5.818754	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87473417	87529092	SPARCL1|ENST00000503414.5	-	87473417,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87497130,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87497239,87499585,87529092	0.934211
esophagus_muscularis_mucosa_female_adult_51_years	chr2	10844348	10844396	10844373	+	High_confidence	22	22	65	3.563116	4.452247	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844242	10885118	STRG.10494.3	+	10844242,10884833	10844832,10885118	0.815385
esophagus_muscularis_mucosa_female_adult_51_years	chr11	114651543	114651544	114651543	-	High_confidence	40	40	42	2.302321	3.373727	chr11	114651116	114651893	LTR|ERV1|LTR12	-	chr11	114648275	114651528	STRG.69164.1	-	114648275,114651162	114648345,114651528	0.809524
esophagus_muscularis_mucosa_female_adult_51_years	chr20	37297344	37297401	37297344	+	High_confidence	6	6	32	1.754149	4.663910	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr19	11196122	11196219	11196140	-	High_confidence	29	29	260	14.252464	5.931368	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.950000
esophagus_muscularis_mucosa_female_adult_51_years	chr11	111097312	111097352	111097351	-	High_confidence	3	3	9	0.493355	2.947703	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.777778
esophagus_muscularis_mucosa_female_adult_51_years	chr1	7913248	7913268	7913248	-	RAMPAGE_only	8	9	17	0.931892	3.572469	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.647059
esophagus_muscularis_mucosa_female_adult_51_years	chr1	33021373	33021419	33021416	-	RAMPAGE_only	4	5	16	0.877075	3.240224	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.937500
esophagus_muscularis_mucosa_female_adult_51_years	chr7	87040212	87040223	87040222	-	RAMPAGE_only	4	5	12	0.657806	2.845351	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr15	34588450	34588453	34588452	-	High_confidence	4	7	8	0.438537	2.807355	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	201790489	201790517	201790506	+	RAMPAGE_only	3	3	13	0.712623	3.418296	chr2	201790433	201790802	LINE|L2|L2-3_Crp	-	chr2	201806578	201895550	CDK15|ENST00000450471.6	+	201806578,201807493,201807857,201812482,201822808,201823664,201833847,201835642,201847380,201854873,201872277,201880027,201890802,201893300	201806787,201807643,201807952,201812562,201822903,201823727,201833971,201835763,201847474,201854937,201872326,201880167,201890927,201895550	0.538462
esophagus_muscularis_mucosa_female_adult_51_years	chr19	5680240	5680261	5680240	-	High_confidence	3	3	17	0.931892	3.875000	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.882353
esophagus_muscularis_mucosa_female_adult_51_years	chr12	643627	643636	643627	-	High_confidence	48	88	159	8.715930	5.490531	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.943396
esophagus_muscularis_mucosa_female_adult_51_years	chr17	4143196	4143215	4143199	+	High_confidence	116	118	274	15.019904	5.885015	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.970803
esophagus_muscularis_mucosa_female_adult_51_years	chr9	6251210	6251215	6251214	+	RAMPAGE_only	7	7	12	0.657806	3.095795	chr9	6251008	6251757	DNA|hAT-Charlie|Charlie17b	+	chr9	6241694	6257982	IL33|ENST00000456383.3	+	6241694,6250473,6251139,6253551,6254461,6255967	6241785,6250599,6251265,6253602,6254553,6257982	0.916667
esophagus_muscularis_mucosa_female_adult_51_years	chr3	14047155	14047206	14047205	-	High_confidence	33	45	96	5.262448	4.930191	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14041338	14047066	STRG.19892.1	-	14041338,14046812	14041628,14047066	0.802083
esophagus_muscularis_mucosa_female_adult_51_years	chr20	50130092	50130118	50130101	-	High_confidence	21	21	117	6.413609	5.547631	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50124043	50130184	STRG.99593.5	-	50124043,50127974,50129545,50130051	50125179,50128187,50129690,50130184	0.965812
esophagus_muscularis_mucosa_female_adult_51_years	chr15	56737902	56737905	56737904	-	RAMPAGE_only	4	8	8	0.438537	2.750000	chr15	56737845	56738254	LTR|ERVL-MaLR|MLT1J2	+	chr15	56630175	56734086	ZNF280D|NM_001002843.2	-	56630175,56635194,56642951,56654197,56654384,56658423,56666394,56666678,56668822,56676669,56677573,56678663,56682253,56689040,56689299,56693097,56700932,56701172,56704120,56707262,56733457	56632122,56635250,56642997,56654234,56654503,56658486,56666535,56666986,56668957,56676816,56677674,56678821,56682477,56689150,56689470,56693215,56701072,56701238,56704267,56707306,56734086	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	184792025	184792129	184792128	-	RAMPAGE_only	8	10	47	2.576407	4.791636	chr1	184791959	184792240	SINE|Alu|AluJo	-	chr1	184791029	184974550	FAM129A|ENST00000367511.3	-	184791029,184798078,184803584,184805945,184808073,184818637,184823166,184823637,184831846,184884632,184890107,184894074,184899178,184974301	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184823742,184831962,184884800,184890222,184894206,184899309,184974550	0.957447
esophagus_muscularis_mucosa_female_adult_51_years	chr10	72355112	72355146	72355145	-	High_confidence	27	27	68	3.727567	4.390477	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.970588
esophagus_muscularis_mucosa_female_adult_51_years	chr7	53811930	53811935	53811934	-	High_confidence	6	6	11	0.602989	3.095795	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr11	117836274	117836308	117836297	+	High_confidence	3	3	14	0.767440	3.378783	chr11	117836254	117836523	SINE|Alu|AluJb	-	chr11	117836294	117838271	STRG.69319.1	+	117836294,117837167	117836502,117838271	0.928571
esophagus_muscularis_mucosa_female_adult_51_years	chr4	86453149	86453203	86453202	-	High_confidence	10	10	61	3.343847	4.498211	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.901639
esophagus_muscularis_mucosa_female_adult_51_years	chr9	121281850	121281892	121281850	+	RAMPAGE_only	14	17	32	1.754149	4.351410	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.750000
esophagus_muscularis_mucosa_female_adult_51_years	chr22	37508811	37508840	37508811	-	High_confidence	2	2	8	0.438537	2.521641	chr22	37508777	37508913	SINE|MIR|MIRc	+	chr22	37490363	37509149	CARD10|ENST00000406271.7	-	37490363,37491754,37492434,37492643,37494085,37495516,37495759,37496448,37497018,37502601,37503184,37504185,37504634,37506191,37507828,37508526,37509007	37491393,37491867,37492550,37492802,37494188,37495586,37496003,37496560,37497178,37502725,37503213,37504301,37504769,37506383,37507954,37508682,37509149	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr9	68975832	68975855	68975832	-	High_confidence	11	11	29	1.589698	3.883337	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68956947	68975833	STRG.57407.2	-	68956947,68975663	68957211,68975833	0.551724
esophagus_muscularis_mucosa_female_adult_51_years	chr9	132269423	132269439	132269423	-	RAMPAGE_only	6	6	14	0.767440	2.873141	chr9	132269273	132269389	SINE|MIR|MIR	-	chr9	132261355	132275382	SETX|ENST00000477049.1	-	132261355,132266126,132269614,132271709,132275255	132264985,132266249,132269702,132271808,132275382	0.785714
esophagus_muscularis_mucosa_female_adult_51_years	chr5	95509594	95509601	95509594	-	RAMPAGE_only	3	4	7	0.383720	2.807355	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr5	154409663	154409682	154409666	+	RAMPAGE_only	2	2	8	0.438537	2.521641	chr5	154409601	154409687	LINE|L1|L1PREC2	+	chr5	154403776	154419033	GALNT10|ENST00000517958.1	+	154403776,154409540,154412888,154415782,154416813	154404216,154409762,154413005,154415932,154419033	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr20	45833293	45833315	45833293	-	High_confidence	8	8	38	2.083052	3.655051	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr11	123071311	123071604	123071386	-	RAMPAGE_only	61	65	429	23.516565	5.234629	chr11	123071151	123071444	SINE|Alu|AluSx	+	chr11	123069864	123195281	CLMP|ENST00000448775.3	-	123069864,123074701,123083084,123083679,123084511,123097794,123194912	123073774,123074843,123083207,123083847,123084713,123097952,123195281	0.995338
esophagus_muscularis_mucosa_female_adult_51_years	chr5	55982752	55982800	55982789	-	High_confidence	4	4	19	1.041526	3.932138	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.894737
esophagus_muscularis_mucosa_female_adult_51_years	chrX	11351636	11351676	11351675	-	RAMPAGE_only	36	37	63	3.453482	5.295411	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.650794
esophagus_muscularis_mucosa_female_adult_51_years	chr19	46350849	46350851	46350849	+	RAMPAGE_only	11	13	19	1.041526	3.572431	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.947368
esophagus_muscularis_mucosa_female_adult_51_years	chr4	122209197	122209315	122209314	+	High_confidence	5	5	31	1.699332	2.813698	chr4	122209362	122209650	SINE|Alu|AluSx	+	chr4	122209173	122227747	KIAA1109|ENST00000482114.1	+	122209173,122209817,122210886,122219339,122220332,122224497	122209337,122209924,122211095,122219567,122220470,122227747	0.935484
esophagus_muscularis_mucosa_female_adult_51_years	chr15	52548725	52548865	52548828	-	RAMPAGE_only	8	10	108	5.920254	4.473082	chr15	52548772	52548988	DNA|TcMar-Tigger|MamRep434	-	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	0.981481
esophagus_muscularis_mucosa_female_adult_51_years	chrX	73841835	73841877	73841876	-	High_confidence	3	3	10	0.548172	2.947703	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.900000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	188153195	188153257	188153209	+	High_confidence	10	10	56	3.069761	5.186732	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr11	12527947	12528407	12528406	+	RAMPAGE_only	42	43	480	26.312241	6.393562	chr11	12528254	12528421	SINE|MIR|MIRb	-	chr11	12377478	12535356	PARVA|ENST00000649199.1	+	12377478,12473744,12473912,12477846,12496457,12504313,12508583,12511513,12513298,12513996,12517609,12518444,12527848	12377783,12473834,12473983,12477949,12496598,12504429,12508642,12511533,12513360,12514065,12517711,12518517,12535356	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	217936962	217937054	217936990	-	RAMPAGE_only	4	4	24	1.315612	4.022055	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217803445	217944005	TNS1|ENST00000611415.4	-	217803445,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217830366,217831454,217835090,217836014,217847509,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217906334,217907209,217920194,217943864	217804603,217808107,217808671,217809991,217810319,217812445,217813304,217813816,217814998,217818759,217821938,217830390,217831547,217835166,217836211,217849087,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217906385,217907251,217920236,217944005	0.791667
esophagus_muscularis_mucosa_female_adult_51_years	chr13	46467861	46467872	46467861	-	High_confidence	2	3	7	0.383720	2.584963	chr13	46467669	46468268	LTR|ERV1|HERVE-int	+	chr13	46455138	46467857	LINC01198|ENST00000648133.1	-	46455138,46457839,46460944,46464674,46465842,46466608,46467660	46455511,46457913,46461170,46464819,46465987,46466709,46467857	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr5	150125450	150125570	150125473	-	RAMPAGE_only	5	5	34	1.863784	4.793345	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr11	12249200	12249221	12249200	+	RAMPAGE_only	5	5	22	1.205978	3.713048	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.772727
esophagus_muscularis_mucosa_female_adult_51_years	chrX	53220847	53220858	53220847	-	RAMPAGE_only	6	7	15	0.822258	3.521641	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	0.933333
esophagus_muscularis_mucosa_female_adult_51_years	chr4	185620092	185620133	185620107	-	RAMPAGE_only	10	15	94	5.152814	4.973495	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.893617
esophagus_muscularis_mucosa_female_adult_51_years	chr3	49468637	49468670	49468669	+	High_confidence	9	9	34	1.863784	4.253212	chr3	49468531	49468836	SINE|Alu|AluSx1	-	chr3	49468702	49535618	DAG1|NM_001177643.2	+	49468702,49510418,49530796	49469055,49510819,49535618	0.970588
esophagus_muscularis_mucosa_female_adult_51_years	chr2	173182284	173182285	173182284	+	RAMPAGE_only	9	9	9	0.493355	2.725481	chr2	173182099	173182382	LINE|L1|L1MB7	+	chr2	173160009	173191177	MAP3K20|ENST00000480606.1	+	173160009,173169804,173182853,173187557,173190894,173191039	173160407,173169892,173182955,173187623,173190923,173191177	0.777778
esophagus_muscularis_mucosa_female_adult_51_years	chr11	94873430	94873631	94873551	+	RAMPAGE_only	163	163	452	24.777360	5.225319	chr11	94873471	94873673	SINE|MIR|MIRb	-	chr11	94768370	94876753	AMOTL1|ENST00000433060.2	+	94768370,94795010,94799389,94821529,94830049,94831451,94850113,94853932,94859524,94864734,94865941,94869197,94870688	94768560,94795160,94800311,94821821,94830194,94831541,94850259,94854082,94859715,94864860,94866168,94869473,94876753	0.993363
esophagus_muscularis_mucosa_female_adult_51_years	chr12	124374443	124374456	124374455	-	RAMPAGE_only	5	5	14	0.767440	3.521641	chr12	124374395	124374495	LINE|CR1|L3b	+	chr12	124324415	124422554	NCOR2|ENST00000356219.7	-	124324415,124326190,124327408,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124398118,124400500,124402403,124419956,124422500	124325583,124326370,124327633,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362297,124363799,124372610,124374463,124378384,124385887,124398181,124400673,124402561,124420055,124422554	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	217937115	217937162	217937115	-	High_confidence	45	49	165	9.044833	6.202271	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.545455
esophagus_muscularis_mucosa_female_adult_51_years	chr4	79086113	79086178	79086142	+	High_confidence	3	4	30	1.644515	4.137538	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.633333
esophagus_muscularis_mucosa_female_adult_51_years	chr10	133369958	133369967	133369958	-	RAMPAGE_only	4	4	9	0.493355	2.500000	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chr2	232551105	232551106	232551105	+	High_confidence	6	6	8	0.438537	2.521641	chr2	232551133	232551224	SINE|MIR|MIRb	+	chr2	232550806	232567205	EIF4E2|ENST00000454501.1	+	232550806,232556415,232557883,232564246,232566828,232567077	232551218,232556530,232558018,232564351,232566981,232567205	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	11201309	11201342	11201313	-	RAMPAGE_only	5	5	23	1.260795	4.004886	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.956522
esophagus_muscularis_mucosa_female_adult_51_years	chr7	128648788	128648821	128648788	+	RAMPAGE_only	1	2	10	0.548172	3.169925	chr7	128648764	128648951	SINE|Alu|AluJb	-	chr7	128650149	128653243	STRG.50410.9	+	128650149,128651037,128651188	128650810,128651095,128653243	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr19	53874840	53874903	53874902	+	RAMPAGE_only	255	256	397	21.762416	5.489655	chr19	53874763	53874953	SINE|Alu|AluSx	-	chr19	53869405	53876435	MYADM|ENST00000391769.2	+	53869405,53869753,53873527	53869598,53869838,53876435	0.987406
esophagus_muscularis_mucosa_female_adult_51_years	chr6	3083202	3083274	3083251	+	RAMPAGE_only	5	5	35	1.918601	4.193429	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.942857
esophagus_muscularis_mucosa_female_adult_51_years	chr16	27330147	27330167	27330147	+	RAMPAGE_only	3	3	8	0.438537	2.521641	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27340203	27364777	STRG.86386.4	+	27340203,27342120,27344868,27345373,27346466,27352539,27355807,27358915,27360765,27362251	27340273,27342259,27345020,27345789,27346618,27352696,27355907,27358994,27360815,27364777	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	201115931	201115967	201115966	+	High_confidence	6	6	23	1.260795	3.969002	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.913043
esophagus_muscularis_mucosa_female_adult_51_years	chr3	128626807	128626817	128626816	-	RAMPAGE_only	3	4	11	0.602989	2.550341	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr19	17336685	17336720	17336685	+	High_confidence	10	10	27	1.480064	4.469670	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.703704
esophagus_muscularis_mucosa_female_adult_51_years	chr1	156252925	156252930	156252929	-	RAMPAGE_only	3	3	7	0.383720	2.584963	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156250032	156251380	SMG5|ENST00000476954.1	-	156250032,156250857	156250670,156251380	0.714286
esophagus_muscularis_mucosa_female_adult_51_years	chr3	151539211	151539271	151539248	-	RAMPAGE_only	3	4	21	1.151161	3.681881	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.619048
esophagus_muscularis_mucosa_female_adult_51_years	chr11	123060115	123060257	123060188	-	High_confidence	19	21	291	15.951796	5.542187	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.549828
esophagus_muscularis_mucosa_female_adult_51_years	chr2	3536487	3536516	3536515	-	High_confidence	4	5	14	0.767440	3.546594	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.714286
esophagus_muscularis_mucosa_female_adult_51_years	chr1	12409848	12409855	12409854	+	RAMPAGE_only	12	12	22	1.205978	3.748995	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.954545
esophagus_muscularis_mucosa_female_adult_51_years	chr6	29497474	29497479	29497474	+	High_confidence	6	6	10	0.548172	2.725481	chr6	29497305	29497670	LTR|ERVL-MaLR|THE1D	+	chr6	29497508	29510556	AL662860.1|ENST00000436804.1	+	29497508,29505320,29507168,29510267	29497539,29505377,29507668,29510556	0.700000
esophagus_muscularis_mucosa_female_adult_51_years	chr10	45000503	45000515	45000514	+	High_confidence	9	12	18	0.986709	3.947703	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr2	229232040	229232054	229232053	-	High_confidence	34	35	84	4.604642	5.743159	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.928571
esophagus_muscularis_mucosa_female_adult_51_years	chr10	88939876	88939904	88939876	-	RAMPAGE_only	5	6	20	1.096343	3.546439	chr10	88939875	88939917	LINE|L2|L2a	+	chr10	88935073	88952773	ACTA2|ENST00000224784.10	-	88935073,88938060,88939506,88941228,88941784,88943796,88947257,88948801,88952730	88935366,88938242,88939698,88941390,88941869,88943907,88947386,88948953,88952773	0.650000
esophagus_muscularis_mucosa_female_adult_51_years	chrX	5726116	5726132	5726116	-	High_confidence	13	15	25	1.370429	3.125815	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719490	5726134	STRG.103516.1	-	5719490,5725929	5719872,5726134	0.800000
esophagus_muscularis_mucosa_female_adult_51_years	chr5	154038408	154038409	154038408	-	High_confidence	8	8	9	0.493355	3.000000	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.555556
esophagus_muscularis_mucosa_female_adult_51_years	chr2	219441623	219441624	219441623	+	High_confidence	8	8	8	0.438537	2.750000	chr2	219441614	219441686	SINE|MIR|MIR1_Amn	+	chr2	219442046	219448158	STRG.18685.9	+	219442046,219443107,219444652,219444824,219447973	219442083,219444059,219444742,219445161,219448158	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	147173173	147173174	147173173	+	High_confidence	4	4	6	0.328903	2.584963	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.833333
esophagus_muscularis_mucosa_female_adult_51_years	chr18	9117551	9117565	9117564	+	RAMPAGE_only	2	2	6	0.328903	2.584963	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr5	180830987	180831032	180831009	+	High_confidence	14	14	77	4.220922	5.617771	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.922078
esophagus_muscularis_mucosa_female_adult_51_years	chr5	96934454	96934465	96934454	+	RAMPAGE_only	10	10	25	1.370429	4.334963	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.880000
esophagus_muscularis_mucosa_female_adult_51_years	chr14	81170412	81170420	81170419	-	High_confidence	5	6	18	0.986709	3.381580	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chr8	38850430	38850734	38850651	+	RAMPAGE_only	20	22	213	11.676057	6.346590	chr8	38850509	38850800	SINE|Alu|AluJb	+	chr8	38839283	38853028	TACC1|ENST00000519093.5	+	38839283,38842286,38843288,38846698,38847954	38840267,38842447,38843395,38846819,38853028	0.995305
esophagus_muscularis_mucosa_female_adult_51_years	chr2	36513735	36513759	36513758	+	RAMPAGE_only	5	5	18	0.986709	3.528064	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36356226	36551135	CRIM1|NM_016441.2	+	36356226,36396613,36441257,36442614,36464533,36476888,36479496,36499218,36509982,36512272,36513555,36517326,36522091,36537351,36544375,36546983,36548524	36356623,36396787,36441500,36442735,36464655,36477071,36479694,36499347,36510139,36512394,36513765,36517542,36522313,36537546,36544498,36547171,36551135	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chr15	58851957	58851958	58851957	+	RAMPAGE_only	13	15	18	0.986709	3.794653	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr16	15862843	15862886	15862843	-	RAMPAGE_only	11	11	26	1.425246	4.220176	chr16	15862762	15863014	LINE|L1|L1MC2	+	chr16	15703786	15857033	MYH11|ENST00000576790.6	-	15703786,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15786732,15798687,15823411,15838269,15857033	0.846154
esophagus_muscularis_mucosa_female_adult_51_years	chrX	47179158	47179159	47179158	+	High_confidence	5	5	7	0.383720	2.521641	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr5	109383412	109383455	109383431	-	High_confidence	6	6	35	1.918601	4.453189	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.942857
esophagus_muscularis_mucosa_female_adult_51_years	chr2	48479384	48479385	48479384	+	High_confidence	91	91	110	6.029889	5.768242	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48479320	48491284	STRG.12049.6	+	48479320,48479923,48486630,48491017	48479556,48480016,48486758,48491284	0.672727
esophagus_muscularis_mucosa_female_adult_51_years	chr15	99098593	99098611	99098608	+	High_confidence	6	6	19	1.041526	3.787144	chr15	99098604	99098809	SINE|MIR|MIR	+	chr15	99098216	99135593	SYNM|ENST00000560674.5	+	99098216,99113590,99126721,99129366,99132749	99098637,99113715,99126792,99131813,99135593	0.842105
esophagus_muscularis_mucosa_female_adult_51_years	chr5	32403116	32403149	32403116	-	RAMPAGE_only	25	30	84	4.604642	4.766225	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.976190
esophagus_muscularis_mucosa_female_adult_51_years	chr11	72111431	72111467	72111466	-	High_confidence	2	2	8	0.438537	2.521641	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72110163	72111483	ANAPC15|ENST00000438939.6	-	72110163,72110543,72111156,72111441	72110261,72110603,72111286,72111483	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr17	2975621	2975665	2975660	+	High_confidence	4	7	28	1.534881	4.378783	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975668	3037667	STRG.88444.2	+	2975668,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2975771,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037667	0.928571
esophagus_muscularis_mucosa_female_adult_51_years	chr22	24011756	24011757	24011756	+	High_confidence	8	8	9	0.493355	2.500000	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.777778
esophagus_muscularis_mucosa_female_adult_51_years	chr18	8714136	8714137	8714136	+	High_confidence	6	6	6	0.328903	2.584963	chr18	8714168	8714357	SINE|MIR|MIRb	+	chr18	8714136	8718592	STRG.92321.9	+	8714136,8718423	8714249,8718592	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr15	90467510	90467523	90467510	+	RAMPAGE_only	2	3	10	0.548172	2.725481	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.700000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	171517792	171517814	171517813	+	RAMPAGE_only	3	3	9	0.493355	2.947703	chr1	171517862	171517949	DNA|hAT-Charlie|Charlie4a	+	chr1	171512031	171593511	PRRC2C|ENST00000426496.6	+	171512031,171513000,171514535,171515733,171517590,171522176,171523220,171523434,171524820,171527790,171532342,171535427,171536028,171537262,171539970,171545478,171550085,171557239,171561017,171566232,171566591,171568246,171571319,171574926,171577433,171579353,171579827,171583955,171584418,171587002,171587647,171588378,171591586	171512200,171513172,171514645,171515859,171517814,171522259,171523354,171523522,171524965,171527844,171532961,171535597,171536278,171537473,171542229,171545687,171550240,171558143,171561103,171566421,171566843,171568339,171571421,171575128,171577637,171579466,171579964,171584187,171584526,171587221,171587751,171588505,171593511	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr9	130268662	130268702	130268693	+	High_confidence	5	7	32	1.754149	4.438067	chr9	130268629	130268697	LINE|L2|L2b	-	chr9	130268671	130320904	STRG.59890.3	+	130268671,130284602,130285157,130286187,130294854,130295665,130296673,130299024,130302856,130303486,130304729,130306128,130306810,130307452,130309911,130319494,130320355,130320775	130268731,130284673,130285316,130286310,130295026,130295772,130296794,130299288,130303001,130303608,130305002,130306270,130306938,130307566,130310061,130319695,130320451,130320904	0.968750
esophagus_muscularis_mucosa_female_adult_51_years	chr9	20658312	20658347	20658312	+	High_confidence	5	5	24	1.315612	4.022055	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.750000
esophagus_muscularis_mucosa_female_adult_51_years	chr8	99893443	99893445	99893444	-	High_confidence	8	14	14	0.767440	2.807355	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr11	108330416	108330417	108330416	+	RAMPAGE_only	5	5	7	0.383720	2.521641	chr11	108330466	108330549	LINE|L2|L2c	+	chr11	108296973	108333908	ATM|ENST00000533690.5	+	108296973,108299713,108301647,108302852,108304674,108307896,108310159,108312410,108315822,108316010,108317372,108319953,108321300,108325309,108326057,108327644,108329020,108330213,108331443,108331878,108332761,108333885	108297382,108299885,108301789,108303029,108304852,108307984,108310315,108312498,108315911,108316113,108317521,108320058,108321420,108325544,108326225,108327758,108329238,108330421,108331557,108332037,108332900,108333908	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr20	17573071	17573090	17573071	+	RAMPAGE_only	25	25	47	2.576407	4.732691	chr20	17572958	17573157	LTR|ERV1|MER92D	-	chr20	17570089	17607222	DSTN|ENST00000449141.2	+	17570089,17600737,17604554,17605109,17607036	17570211,17601045,17604631,17605211,17607222	0.872340
esophagus_muscularis_mucosa_female_adult_51_years	chr12	7502477	7502524	7502503	-	High_confidence	6	7	31	1.699332	4.582119	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.903226
esophagus_muscularis_mucosa_female_adult_51_years	chr6	35672673	35672674	35672673	-	RAMPAGE_only	7	7	9	0.493355	2.500000	chr6	35672643	35672949	SINE|Alu|AluY	+	chr6	35573584	35688915	FKBP5|ENST00000539068.5	-	35573584,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35688731	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35642843,35688915	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr1	1655409	1655411	1655410	-	RAMPAGE_only	66	80	100	5.481717	6.008046	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.600000
esophagus_muscularis_mucosa_female_adult_51_years	chr18	36122216	36122249	36122243	-	High_confidence	2	3	10	0.548172	3.169925	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.900000
esophagus_muscularis_mucosa_female_adult_51_years	chr20	44696111	44696112	44696111	-	High_confidence	20	20	21	1.151161	4.021928	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr20	44532558	44532595	44532569	+	High_confidence	33	34	63	3.453482	5.445379	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531915	44624247	PKIG|ENST00000372887.5	+	44531915,44582584,44589796,44614533,44623932	44531978,44582731,44589866,44614707,44624247	0.634921
esophagus_muscularis_mucosa_female_adult_51_years	chr1	20685297	20685334	20685297	-	High_confidence	2	4	15	0.822258	3.506891	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.733333
esophagus_muscularis_mucosa_female_adult_51_years	chr11	10690279	10690352	10690279	-	RAMPAGE_only	5	5	24	1.315612	4.022055	chr11	10690108	10690385	SINE|Alu|AluSz6	+	chr11	10576323	10693514	STRG.65281.3	-	10576323,10580454,10581866,10591547,10593491,10594145,10600917,10603119,10604404,10606741,10609727,10623777,10625965,10627715,10627972,10628750,10629537,10631990,10633967,10652024,10690264,10693461	10576575,10580589,10581986,10591612,10593599,10594195,10601059,10603251,10604545,10606772,10609851,10623856,10626583,10627760,10628025,10628828,10629711,10632061,10634071,10652182,10690369,10693514	0.916667
esophagus_muscularis_mucosa_female_adult_51_years	chr6	107872863	107872868	107872863	-	RAMPAGE_only	4	5	12	0.657806	2.732159	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.916667
esophagus_muscularis_mucosa_female_adult_51_years	chr8	144106422	144106451	144106431	+	RAMPAGE_only	4	4	14	0.767440	3.180833	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144104511	144107611	MAF1|ENST00000534585.5	+	144104511,144105639,144105868,144106075,144106342,144106834,144107087	144104858,144105766,144105997,144106241,144106674,144106963,144107611	0.928571
esophagus_muscularis_mucosa_female_adult_51_years	chr6	17856034	17856035	17856034	-	RAMPAGE_only	5	5	7	0.383720	2.584963	chr6	17855745	17856010	SINE|Alu|AluJo	-	chr6	17759182	17987463	KIF13A|ENST00000378814.9	-	17759182,17764154,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571,17796668,17799265,17799951,17804360,17805474,17808767,17817019,17825767,17826037,17828239,17831100,17833960,17836877,17837471,17849376,17850322,17851954,17855436,17856029,17873376,17898167,17987053,17987408	17760877,17764946,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794704,17796820,17799439,17800113,17804510,17805615,17808930,17817233,17825934,17826124,17828370,17831235,17834071,17837090,17837583,17849489,17850457,17852042,17855617,17856122,17873437,17898180,17987144,17987463	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr11	47569859	47569868	47569867	+	RAMPAGE_only	3	4	7	0.383720	2.584963	chr11	47569909	47570209	SINE|Alu|AluJb	+	chr11	47565897	47573461	PTPMT1|ENST00000527079.2	+	47565897,47569699,47571470	47565986,47569891,47573461	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr2	201167336	201167385	201167384	+	High_confidence	2	2	11	0.602989	2.921928	chr2	201167231	201167526	SINE|Alu|AluJo	+	chr2	201166964	201167546	AC007283.1|ENST00000434645.1	+	201166964,201167409	201167272,201167546	0.636364
esophagus_muscularis_mucosa_female_adult_51_years	chr1	166850052	166850124	166850123	+	RAMPAGE_only	24	29	60	3.289030	5.089898	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166845485	166854473	STRG.6674.6	+	166845485,166847493,166848937,166849787	166846738,166847592,166849733,166854473	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr18	9117589	9117606	9117605	+	RAMPAGE_only	4	4	14	0.767440	3.238901	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	0.785714
esophagus_muscularis_mucosa_female_adult_51_years	chr15	62894572	62894597	62894572	+	RAMPAGE_only	6	6	15	0.822258	3.640224	chr15	62894534	62894826	SINE|Alu|AluSx3	+	chr15	62895811	62899543	AC103740.2|ENST00000557900.1	+	62895811,62898650	62896143,62899543	0.866667
esophagus_muscularis_mucosa_female_adult_51_years	chr5	151687240	151687251	151687244	-	High_confidence	17	17	36	1.973418	4.440351	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr9	129698737	129698760	129698737	+	RAMPAGE_only	5	5	9	0.493355	3.169925	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr4	79744351	79744352	79744351	-	RAMPAGE_only	4	4	7	0.383720	2.521641	chr4	79743637	79744703	LINE|L2|L2a	+	chr4	79702679	79702992	STRG.29232.1	-	79702679	79702992	0.571429
esophagus_muscularis_mucosa_female_adult_51_years	chr8	116648842	116648917	116648864	-	RAMPAGE_only	7	10	38	2.083052	4.418723	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr16	86490425	86490426	86490425	-	High_confidence	4	5	7	0.383720	2.807355	chr16	86490288	86490466	LTR|ERVL-MaLR|MLT1F1	-	chr16	86487705	86490879	FENDRR|ENST00000598996.2	-	86487705,86490852	86490513,86490879	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr9	111284874	111284884	111284874	-	High_confidence	8	10	14	0.767440	3.238901	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.928571
esophagus_muscularis_mucosa_female_adult_51_years	chr1	54200525	54200558	54200557	+	High_confidence	10	11	16	0.877075	3.189898	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr17	79658941	79658955	79658954	-	RAMPAGE_only	5	5	10	0.548172	2.725481	chr17	79658911	79659280	LTR|ERVL-MaLR|MLT1I	-	chr17	79100593	79611121	STRG.91782.4	-	79100593,79103161,79104072,79106650,79115493,79235765,79307723,79482453,79610825	79101644,79103254,79104126,79106788,79115748,79235805,79307824,79482598,79611121	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	13	14	14	0.767440	3.378783	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888512	77933384	NEXN|ENST00000401035.7	+	77888512,77916054,77917959,77918124,77925187,77926413,77926715,77929315,77933281	77888759,77916133,77918038,77918273,77925229,77926611,77926892,77929504,77933384	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr21	29077474	29077501	29077486	+	High_confidence	12	12	33	1.808967	4.195816	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.818182
esophagus_muscularis_mucosa_female_adult_51_years	chrX	124243024	124243041	124243024	+	RAMPAGE_only	3	3	8	0.438537	2.807355	chrX	124242976	124243273	SINE|Alu|AluSz6	-	chrX	124227867	124373197	SH2D1A|ENST00000635645.1	+	124227867,124234572,124246241,124365760,124370175,124371350	124228170,124234671,124246337,124365824,124370320,124373197	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr20	44746222	44746254	44746253	-	High_confidence	9	10	32	1.754149	4.625000	chr20	44746252	44746334	SINE|MIR|MIR3	+	chr20	44711861	44746227	KCNK15-AS1|NR_132377.1	-	44711861,44716624,44737510,44738819,44745964	44711988,44716793,44737570,44738934,44746227	0.593750
esophagus_muscularis_mucosa_female_adult_51_years	chr14	44912767	44912807	44912806	-	High_confidence	2	3	7	0.383720	2.584963	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44766218	44912779	STRG.78696.1	-	44766218,44767994,44797929,44831615,44899229,44911756,44912452	44766334,44768129,44798012,44831690,44899313,44911860,44912779	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr10	79446860	79446869	79446860	-	RAMPAGE_only	30	31	71	3.892019	4.146839	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.929577
esophagus_muscularis_mucosa_female_adult_51_years	chr11	116786528	116786571	116786570	-	High_confidence	3	3	15	0.822258	3.378783	chr11	116786570	116786754	SINE|MIR|MIR3	+	chr11	116782157	116785843	ZPR1|ENST00000449430.1	-	116782157,116782918,116783529,116784377,116784858,116785098,116785513,116785795	116782244,116783029,116783619,116784498,116784921,116785146,116785636,116785843	0.933333
esophagus_muscularis_mucosa_female_adult_51_years	chr17	77127869	77127873	77127872	+	High_confidence	5	5	11	0.602989	2.913977	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chr1	27301333	27301457	27301456	+	RAMPAGE_only	6	9	28	1.534881	4.423252	chr1	27301504	27301735	SINE|MIR|MIRb	+	chr1	27305013	27306890	WDTC1|ENST00000472249.2	+	27305013,27306185,27306707	27305193,27306450,27306890	0.607143
esophagus_muscularis_mucosa_female_adult_51_years	chr4	47855440	47855441	47855440	-	RAMPAGE_only	5	5	7	0.383720	2.807355	chr4	47855405	47855475	LTR|ERVL-MaLR|MLT1J	+	chr4	47847239	47878704	NFXL1|ENST00000502448.5	-	47847239,47851094,47851855,47855058,47862845,47875126,47878524	47848336,47851148,47851942,47855163,47862915,47875293,47878704	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr7	128984174	128984196	128984195	-	RAMPAGE_only	2	3	9	0.493355	2.500000	chr7	128983986	128984151	LINE|L1|L1M5	-	chr7	128957222	129054883	TNPO3|ENST00000471166.1	-	128957222,128967279,128970147,128972425,128974867,128975818,128978982,128979970,128982247,128984167,128986728,128989960,128991998,128993806,128997388,129000428,129001058,129005015,129014978,129016982,129017956,129054650	128957315,128967392,128970315,128972582,128974962,128975935,128979123,128980031,128982324,128984259,128986920,128990202,128992090,128993914,128997535,129000567,129001234,129005159,129015135,129017056,129018157,129054883	0.555556
esophagus_muscularis_mucosa_female_adult_51_years	chrX	7147267	7147288	7147287	+	High_confidence	3	3	8	0.438537	2.521641	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147271	7354594	STRG.103567.1	+	7147271,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7148083,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354594	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr15	42415212	42415323	42415321	-	RAMPAGE_only	65	86	267	14.636184	5.866011	chr15	42415122	42415421	SINE|Alu|AluSq2	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	78620056	78620058	78620056	+	High_confidence	5	10	10	0.548172	3.121928	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.800000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	202582750	202582838	202582791	+	RAMPAGE_only	10	10	53	2.905310	4.724878	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr20	18794077	18794086	18794077	+	High_confidence	15	15	39	2.137870	4.300623	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	184811044	184811062	184811044	-	RAMPAGE_only	4	4	12	0.657806	3.251629	chr1	184810857	184811494	LTR|ERV1|MER57-int	+	chr1	184790723	184805985	FAM129A|ENST00000417056.5	-	184790723,184798078,184803584,184805945	184791065,184798190,184803692,184805985	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr17	47056614	47056753	47056736	-	RAMPAGE_only	10	16	65	3.563116	5.058842	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.784615
esophagus_muscularis_mucosa_female_adult_51_years	chr12	123390722	123390761	123390725	+	High_confidence	6	7	27	1.480064	4.236369	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.962963
esophagus_muscularis_mucosa_female_adult_51_years	chr14	81427441	81427445	81427441	-	High_confidence	3	3	9	0.493355	2.750000	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81267081	81427472	STRG.80343.1	-	81267081,81270669,81276900,81324016,81370987,81395893,81398294,81427101,81427300	81268497,81270872,81278739,81324187,81371185,81396178,81398580,81427212,81427472	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chr14	101995278	101995300	101995299	+	RAMPAGE_only	2	2	6	0.328903	2.584963	chr14	101995329	101995627	SINE|Alu|AluY	+	chr14	101964572	102011733	DYNC1H1|ENST00000643684.1	+	101964572,101975711,101979318,101979718,101980363,101983018,101983381,101985686,101987452,101988702,101991526,101994183,101994672,101994985,101995180,101997034,101999988,102000285,102000953,102001144,102001534,102002536,102002791,102004517,102005041,102005887,102007007,102008177,102009842,102010275,102010739	101964947,101975799,101979492,101979974,101980550,101983290,101983609,101986763,101987632,101988852,101991673,101994324,101994849,101995096,101995300,101997274,102000144,102000399,102001064,102001354,102001681,102002703,102002965,102004950,102005236,102006170,102007108,102008337,102010086,102010459,102011733	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr7	74046709	74046762	74046761	+	RAMPAGE_only	4	4	25	1.370429	4.323856	chr7	74046801	74047110	SINE|Alu|AluSz6	+	chr7	74042633	74069677	STRG.48873.9	+	74042633,74042983,74043117,74043878,74045221,74046187,74046695,74047674,74048141,74048502,74051749,74051923,74053162,74054715,74056270,74056671,74059885,74060139,74060375,74061100,74063152,74063309,74063620,74065693,74065943,74066731,74068656	74042706,74043034,74043168,74043920,74045293,74046217,74046767,74047716,74048201,74048556,74051839,74051983,74053309,74054769,74056435,74056713,74060047,74060184,74060501,74061139,74063224,74063369,74063695,74065732,74065997,74066776,74069677	0.960000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	139344547	139344579	139344547	+	High_confidence	2	2	9	0.493355	2.947703	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr8	2726955	2726963	2726962	+	High_confidence	8	8	23	1.260795	3.936180	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2726984	2804684	STRG.51540.1	+	2726984,2804585	2727493,2804684	0.826087
esophagus_muscularis_mucosa_female_adult_51_years	chr7	134711498	134711504	134711503	+	RAMPAGE_only	26	26	53	2.905310	5.323856	chr7	134711275	134711628	LTR|ERVL|MLT2D	+	chr7	134744251	134968402	CALD1|ENST00000417172.5	+	134744251,134843883,134867692,134928753,134932987,134941091,134947507,134950373,134958068,134958208,134959973,134960532,134965305,134968339	134744363,134843971,134867804,134928900,134933390,134941237,134947769,134950514,134958112,134958290,134960111,134960628,134965386,134968402	0.792453
esophagus_muscularis_mucosa_female_adult_51_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	8	8	8	0.438537	2.500000	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr7	37353636	37353637	37353636	-	High_confidence	9	9	11	0.602989	2.550341	chr7	37353223	37353900	LTR|ERV1|LTR12_	-	chr7	36852905	37353668	ELMO1|NM_001206482.1	-	36852905,36861658,36870392,36878009,36887559,36894853,37013298,37096618,37133129,37211385,37213334,37216644,37222614,37224878,37233094,37244355,37259180,37271831,37314849,37315919,37342612,37353031	36855751,36861736,36870475,36878117,36887672,36895017,37013435,37096727,37133234,37211517,37213457,37216695,37222693,37225030,37233194,37244391,37259350,37271882,37314922,37315960,37342763,37353668	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chrX	48683361	48683363	48683362	+	High_confidence	15	26	26	1.425246	3.825252	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	1655443	1655475	1655448	-	RAMPAGE_only	7	7	23	1.260795	4.004886	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	0.956522
esophagus_muscularis_mucosa_female_adult_51_years	chr1	6820195	6820232	6820197	+	RAMPAGE_only	7	9	20	1.096343	3.576618	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.650000
esophagus_muscularis_mucosa_female_adult_51_years	chr17	62520840	62520841	62520840	+	RAMPAGE_only	4	4	7	0.383720	2.521641	chr17	62520890	62521168	SINE|Alu|AluJr	+	chr17	62480767	62615481	TLK2|NM_001284363.1	+	62480767,62481120,62520772,62522203,62523133,62536169,62552301,62553662,62560015,62565000,62573214,62576708,62578476,62580110,62586134,62596584,62600650,62602041,62606129,62608040,62612391	62480787,62481206,62520844,62522273,62523177,62536337,62552397,62553755,62560126,62565137,62573367,62576775,62578574,62580192,62586226,62596674,62600820,62602180,62606241,62608148,62615481	0.571429
esophagus_muscularis_mucosa_female_adult_51_years	chr10	92826829	92826851	92826850	+	High_confidence	6	6	17	0.931892	3.625000	chr10	92826510	92827023	LINE|L2|L2a	-	chr10	92826857	92909633	STRG.62872.3	+	92826857,92834712,92893348,92894793,92894929,92899598,92909426	92826944,92834824,92893520,92894841,92895020,92899644,92909633	0.941176
esophagus_muscularis_mucosa_female_adult_51_years	chr3	188884063	188885110	188884260	+	RAMPAGE_only	93	105	2213	121.310393	7.724232	chr3	188884141	188884305	SINE|MIR|MIRc	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.999096
esophagus_muscularis_mucosa_female_adult_51_years	chr6	36540132	36540205	36540204	-	RAMPAGE_only	6	6	21	1.151161	4.011365	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36547470	STK38|ENST00000229812.7	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540207,36547470	0.952381
esophagus_muscularis_mucosa_female_adult_51_years	chr18	8376199	8376200	8376199	+	RAMPAGE_only	14	14	17	0.931892	3.572469	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8370932	8379313	PTPRM|ENST00000583153.2	+	8370932,8371759,8376045,8376461,8378264,8379166	8371006,8371810,8376200,8376597,8378414,8379313	0.705882
esophagus_muscularis_mucosa_female_adult_51_years	chrX	53546444	53546475	53546444	-	RAMPAGE_only	3	3	10	0.548172	3.169925	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.700000
esophagus_muscularis_mucosa_female_adult_51_years	chr10	94246587	94246603	94246602	+	RAMPAGE_only	4	4	11	0.602989	2.846439	chr10	94246652	94246837	SINE|MIR|MIR	+	chr10	94089094	94325609	PLCE1|ENST00000371375.1	+	94089094,94132173,94171179,94227305,94234053,94235914,94245945,94252315,94254189,94254892,94258799,94259013,94262493,94265646,94265792,94268928,94270485,94273561,94279781,94283789,94284847,94293507,94298378,94304481,94306426,94308580,94313253,94316546,94321900,94324348,94324891	94089376,94132459,94171496,94227451,94234312,94236120,94246621,94252498,94254307,94255049,94258922,94259150,94262732,94265708,94265958,94269036,94270602,94273720,94279911,94283911,94284965,94293639,94298669,94304645,94306688,94308699,94313382,94316756,94322059,94324567,94325609	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chr7	11194708	11194709	11194708	+	RAMPAGE_only	7	7	7	0.383720	2.807355	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.714286
esophagus_muscularis_mucosa_female_adult_51_years	chr20	25296603	25296931	25296873	+	RAMPAGE_only	29	36	318	17.431860	5.899635	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	28	28	28	1.534881	3.308277	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	155058772	155058785	155058772	+	High_confidence	6	6	12	0.657806	3.188722	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr19	49086520	49086547	49086520	+	High_confidence	5	5	19	1.041526	3.326360	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.631579
esophagus_muscularis_mucosa_female_adult_51_years	chr3	188885351	188885696	188885505	+	RAMPAGE_only	22	22	358	19.624546	6.070776	chr3	188885494	188885956	LINE|L1|L1PA3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr14	102235448	102235481	102235451	-	High_confidence	5	5	17	0.931892	3.202820	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.941176
esophagus_muscularis_mucosa_female_adult_51_years	chr12	9965320	9965321	9965320	+	RAMPAGE_only	14	16	20	1.096343	3.681881	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	27558503	27558505	27558504	-	High_confidence	5	9	11	0.602989	3.121928	chr1	27558497	27558557	SINE|MIR|MIR3	+	chr1	27551667	27558361	AHDC1|ENST00000487743.3	-	27551667,27552038,27552891,27553073,27558304	27551850,27552189,27552929,27553185,27558361	0.727273
esophagus_muscularis_mucosa_female_adult_51_years	chr1	162782229	162782244	162782229	+	RAMPAGE_only	2	2	6	0.328903	2.584963	chr1	162782100	162782282	SINE|MIR|MIR3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr11	113246367	113246368	113246367	+	RAMPAGE_only	4	6	6	0.328903	2.584963	chr11	113246334	113246435	SINE|5S-Deu-L2|AmnSINE1	+	chr11	113255949	113263174	NCAM1|ENST00000524916.1	+	113255949,113260145,113262902	113256001,113260323,113263174	0.500000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	37820190	37820203	37820202	+	RAMPAGE_only	3	3	12	0.657806	3.251629	chr3	37820051	37820299	LTR|ERVL|LTR16A2	-	chr3	37452118	37823514	ITGA9|ENST00000264741.9	+	37452118,37471006,37473353,37481483,37494500,37503177,37505999,37508558,37513762,37517503,37519259,37523520,37526025,37533313,37542424,37629186,37653713,37683864,37732711,37736903,37741729,37743925,37750461,37777391,37779901,37784976,37803822,37818890	37452559,37471134,37473460,37481607,37494568,37503307,37506085,37508627,37513900,37517609,37519354,37523611,37526071,37533468,37542585,37629336,37653790,37684015,37732798,37736983,37741819,37744034,37750569,37777517,37780021,37785078,37803942,37823514	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr7	158740224	158740281	158740280	-	RAMPAGE_only	38	38	150	8.222575	6.341095	chr7	158740209	158740388	LTR|ERV1|MER49	+	chr7	158733612	158744217	ESYT2|ENST00000435514.3	-	158733612,158734421,158735502,158737047,158739022,158741522,158743528	158734252,158734471,158735608,158737179,158739121,158741896,158744217	0.646667
esophagus_muscularis_mucosa_female_adult_51_years	chr16	15838796	15838826	15838796	-	RAMPAGE_only	3	3	19	1.041526	3.536887	chr16	15838577	15838884	SINE|Alu|AluSz	+	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.894737
esophagus_muscularis_mucosa_female_adult_51_years	chr1	89272836	89272887	89272859	-	High_confidence	4	4	32	1.754149	4.053236	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.937500
esophagus_muscularis_mucosa_female_adult_51_years	chr2	29114158	29114174	29114173	+	High_confidence	3	3	8	0.438537	2.750000	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr4	128570477	128570483	128570482	-	High_confidence	6	7	18	0.986709	3.308271	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr12	2798794	2798816	2798807	+	High_confidence	2	2	7	0.383720	2.584963	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.857143
esophagus_muscularis_mucosa_female_adult_51_years	chr4	119504539	119504594	119504539	-	RAMPAGE_only	4	4	16	0.877075	3.750000	chr4	119503954	119504512	LINE|L1|L1PA17	-	chr4	119494394	119627287	PDE5A|NM_033430.2	-	119494394,119501169,119502580,119504535,119505854,119507603,119511046,119519044,119520934,119525548,119538959,119542458,119552549,119553637,119560295,119562832,119565320,119567072,119596522,119606708,119627149	119498738,119501253,119502655,119504599,119505932,119507704,119511134,119519139,119521060,119525695,119539019,119542634,119552637,119553746,119560363,119562970,119565410,119567144,119596612,119607297,119627287	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	202585210	202585302	202585247	+	RAMPAGE_only	46	46	345	18.911923	4.296813	chr1	202585028	202585296	SINE|Alu|AluJb	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.997101
esophagus_muscularis_mucosa_female_adult_51_years	chrX	5726193	5726194	5726193	-	High_confidence	17	17	20	1.096343	3.884184	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5719490	5726134	STRG.103516.1	-	5719490,5725929	5719872,5726134	0.850000
esophagus_muscularis_mucosa_female_adult_51_years	chr13	27445106	27445108	27445107	-	RAMPAGE_only	11	17	22	1.205978	4.201841	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.909091
esophagus_muscularis_mucosa_female_adult_51_years	chr19	45524130	45524140	45524139	+	RAMPAGE_only	12	15	34	1.863784	3.939829	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.794118
esophagus_muscularis_mucosa_female_adult_51_years	chr4	81154213	81154222	81154221	-	High_confidence	12	13	20	1.096343	3.576618	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.950000
esophagus_muscularis_mucosa_female_adult_51_years	chr3	114759255	114759277	114759276	-	High_confidence	5	5	9	0.493355	2.750000	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.666667
esophagus_muscularis_mucosa_female_adult_51_years	chr16	20676201	20676226	20676201	-	High_confidence	3	3	9	0.493355	2.500000	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chr2	10844241	10844267	10844266	+	High_confidence	11	11	45	2.466773	4.483722	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844242	10885118	STRG.10494.3	+	10844242,10884833	10844832,10885118	0.866667
esophagus_muscularis_mucosa_female_adult_51_years	chr17	76557847	76557854	76557847	+	High_confidence	3	4	9	0.493355	2.725481	chr17	76557889	76558010	SINE|MIR|MIR	+	chr17	76557791	76565279	STRG.91698.2	+	76557791,76558944,76561287,76563118,76563778	76557857,76559043,76561398,76563753,76565279	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr19	1880087	1880088	1880087	-	High_confidence	6	7	8	0.438537	2.521641	chr19	1880079	1880146	DNA|hAT-Ac|OldhAT1	+	chr19	1877203	1880017	ABHD17A|ENST00000592757.1	-	1877203,1877507,1878663,1879920	1877425,1877687,1878904,1880017	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr17	59892716	59892753	59892716	-	High_confidence	3	4	10	0.548172	2.846439	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	202582602	202582615	202582608	+	RAMPAGE_only	5	5	15	0.822258	2.950212	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.933333
esophagus_muscularis_mucosa_female_adult_51_years	chr9	110170637	110170930	110170767	+	RAMPAGE_only	22	34	217	11.895326	5.899442	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	0.990783
esophagus_muscularis_mucosa_female_adult_51_years	chr9	33068834	33068918	33068834	-	RAMPAGE_only	2	3	19	1.041526	3.683542	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.947368
esophagus_muscularis_mucosa_female_adult_51_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	25	26	30	1.644515	3.872906	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.800000
esophagus_muscularis_mucosa_female_adult_51_years	chr10	63594784	63594826	63594824	+	RAMPAGE_only	4	8	26	1.425246	3.825252	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	0.961538
esophagus_muscularis_mucosa_female_adult_51_years	chr12	46239680	46239723	46239680	-	High_confidence	3	3	18	0.986709	3.616875	chr12	46239310	46239631	SINE|Alu|AluSz	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.944444
esophagus_muscularis_mucosa_female_adult_51_years	chr11	65181215	65181240	65181215	+	High_confidence	6	6	23	1.260795	3.697846	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.913043
esophagus_muscularis_mucosa_female_adult_51_years	chr7	128622513	128622529	128622528	+	RAMPAGE_only	5	6	9	0.493355	2.500000	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128577742	128626473	STRG.50410.2	+	128577742,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128578033,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.888889
esophagus_muscularis_mucosa_female_adult_51_years	chrX	147937500	147937526	147937502	+	RAMPAGE_only	2	4	10	0.548172	2.725481	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.700000
esophagus_muscularis_mucosa_female_adult_51_years	chr15	90420259	90420260	90420259	+	RAMPAGE_only	10	10	11	0.602989	2.646439	chr15	90420174	90420357	SINE|MIR|MIRb	-	chr15	90388276	90440528	IQGAP1|ENST00000560418.1	+	90388276,90426109,90429588,90431220,90433718,90439331,90440501	90388396,90426266,90429666,90431252,90433795,90439399,90440528	0.636364
esophagus_muscularis_mucosa_female_adult_51_years	chr16	8842153	8842167	8842153	+	High_confidence	20	20	37	2.028235	4.831075	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.945946
esophagus_muscularis_mucosa_female_adult_51_years	chr7	140641459	140641460	140641459	-	High_confidence	19	19	20	1.096343	3.826875	chr7	140641382	140641679	LINE|L2|L2b	-	chr7	140601924	140641485	DENND2A|ENST00000491728.5	-	140601924,140605704,140641405	140602542,140605806,140641485	0.850000
esophagus_muscularis_mucosa_female_adult_51_years	chr12	56157286	56157416	56157341	+	High_confidence	9	9	104	5.700986	5.299817	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.923077
esophagus_muscularis_mucosa_female_adult_51_years	chr10	71615257	71615258	71615257	+	RAMPAGE_only	8	8	8	0.438537	2.750000	chr10	71614899	71615319	DNA|hAT-Charlie|MER113	-	chr10	71570794	71716872	CDH23|ENST00000466757.8	+	71570794,71577913,71615503,71617204,71635237,71643860,71645830,71646458,71675111,71677455,71679386,71682444,71687646,71690467,71694146,71695417,71702021,71702548,71704910,71706896,71709097,71712664,71715201	71570918,71577992,71615616,71617393,71635297,71643866,71645980,71646617,71675176,71677693,71679492,71682572,71687719,71690584,71694259,71695525,71702211,71702694,71705130,71707049,71709211,71712813,71716872	0.875000
esophagus_muscularis_mucosa_female_adult_51_years	chr10	4202713	4203038	4202713	-	RAMPAGE_only	40	40	204	11.182702	5.869494	chr10	4202458	4202714	LTR|ERV1|MER31B	-	chr10	4201140	4243912	LINC00702|ENST00000608792.1	-	4201140,4243503,4243822	4207166,4243687,4243912	1.000000
esophagus_muscularis_mucosa_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	99	100	100	5.481717	5.390135	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.940000
esophagus_muscularis_mucosa_female_adult_51_years	chr1	192529554	192529587	192529554	+	High_confidence	4	4	15	0.822258	3.807355	chr1	192528890	192530203	LINE|L2|L2a	-	chr1	192529564	192530711	STRG.7703.1	+	192529564,192530306	192529626,192530711	0.800000
esophagus_muscularis_mucosa_female_adult_53_years	chr4	114364914	114364967	114364914	-	High_confidence	27	28	90	4.869234	4.355715	chr4	114364772	114365325	LTR|ERVL-MaLR|MLT1E3	-	chr4	114334843	114364929	STRG.22692.1	-	114334843,114335128,114364807	114335026,114335244,114364929	0.844444
esophagus_muscularis_mucosa_female_adult_53_years	chr5	150118764	150118779	150118764	-	RAMPAGE_only	5	5	9	0.486923	2.725481	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr1	202551736	202551798	202551797	+	RAMPAGE_only	23	23	87	4.706926	5.653336	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.551724
esophagus_muscularis_mucosa_female_adult_53_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	9	9	9	0.486923	3.169925	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr3	188217323	188217324	188217323	+	RAMPAGE_only	13	13	18	0.973847	3.350209	chr3	188216938	188217653	LINE|L2|L2b	-	chr3	188212932	188890671	LPP|NM_005578.4	+	188212932,188225404,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188213046,188225527,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.777778
esophagus_muscularis_mucosa_female_adult_53_years	chr7	11194708	11194730	11194708	+	RAMPAGE_only	19	21	31	1.677181	4.143893	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.612903
esophagus_muscularis_mucosa_female_adult_53_years	chr1	176162925	176162953	176162936	-	RAMPAGE_only	2	2	8	0.432821	2.521641	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	176116645	176206440	COP1|ENST00000491600.5	-	176116645,176135009,176136487,176149005,176162868,176163814,176168664,176175909,176184632,176206348	176116681,176135086,176136547,176149074,176162988,176163891,176168748,176176007,176184692,176206440	0.625000
esophagus_muscularis_mucosa_female_adult_53_years	chr9	122164574	122164596	122164595	+	RAMPAGE_only	23	28	64	3.462567	4.956224	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122166767	122200083	MORN5|ENST00000486801.1	+	122166767,122174495,122199884	122166915,122174627,122200083	0.859375
esophagus_muscularis_mucosa_female_adult_53_years	chr3	188885295	188885540	188885497	+	RAMPAGE_only	21	27	366	19.801553	6.308811	chr3	188885494	188885956	LINE|L1|L1PA3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr9	129698722	129698754	129698738	+	RAMPAGE_only	4	7	27	1.460770	3.476024	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	182030747	182030774	182030773	+	High_confidence	9	9	22	1.190257	3.425119	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.818182
esophagus_muscularis_mucosa_female_adult_53_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	21	25	31	1.677181	4.133169	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.774194
esophagus_muscularis_mucosa_female_adult_53_years	chr3	180870516	180870519	180870518	-	High_confidence	3	5	7	0.378718	2.521641	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180707588	180870178	LOC101928882|NR_109986.1	-	180707588,180711192,180711309,180725514,180733478,180734486,180737492,180747879,180748245,180751347,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180733682,180734606,180737814,180748043,180748319,180751410,180782124,180810470,180847624,180870178	0.571429
esophagus_muscularis_mucosa_female_adult_53_years	chr17	35724739	35724769	35724739	+	RAMPAGE_only	2	4	15	0.811539	3.323231	chr17	35724589	35724771	SINE|MIR|MIR3	-	chr17	35587273	35726409	AP2B1|ENST00000621914.4	+	35587273,35594007,35598229,35605704,35608141,35624396,35626620,35627384,35627630,35636340,35639594,35641876,35650529,35657598,35671753,35674175,35682694,35709223,35710233,35717194,35723624	35587428,35594067,35598335,35605840,35608387,35624587,35626842,35627505,35627726,35636456,35639760,35641975,35650789,35657791,35671900,35674321,35682824,35709308,35710320,35717349,35726409	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr10	92826781	92826851	92826829	+	High_confidence	6	8	31	1.677181	4.453881	chr10	92826510	92827023	LINE|L2|L2a	-	chr10	92826830	93059494	EXOC6|NM_001013848.3	+	92826830,92834712,92893348,92894793,92894929,92899598,92909426,92915757,92919981,92928338,92934143,92934309,92935813,92940726,92948273,92952272,92954629,92955579,92974052,92997473,93014193,93056923,93058222	92826944,92834824,92893520,92894841,92895020,92899644,92909631,92915913,92920050,92928422,92934190,92934430,92935885,92940824,92948379,92952382,92954741,92955714,92974232,92997615,93014267,93057036,93059494	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	28664494	28664537	28664494	-	High_confidence	6	6	16	0.865642	3.750000	chr2	28664229	28664729	LTR|ERVL|LTR18B	+	chr2	28619781	28664512	STRG.8322.1	-	28619781,28664081	28622198,28664512	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	229586902	229586927	229586905	-	High_confidence	4	4	14	0.757436	3.521641	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229357631	229587159	STRG.13601.2	-	229357631,229366872,229388264,229407231,229418107,229447315,229477139,229512782,229546946,229585857,229586693	229358651,229367119,229388396,229407345,229418230,229447540,229477253,229512936,229547092,229586024,229587159	0.928571
esophagus_muscularis_mucosa_female_adult_53_years	chr18	9117589	9117613	9117589	+	RAMPAGE_only	4	4	14	0.757436	3.235926	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr7	158863386	158863409	158863386	+	RAMPAGE_only	5	5	25	1.352565	4.323856	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158857604	158876712	STRG.38440.3	+	158857604,158869854,158871141,158876608	158857664,158869908,158871562,158876712	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr20	18794077	18794086	18794077	+	High_confidence	17	17	45	2.434617	4.694646	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr4	86453308	86453331	86453308	-	High_confidence	8	8	16	0.865642	2.973557	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453325	MAPK10|ENST00000641313.1	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86354644,86453325	0.937500
esophagus_muscularis_mucosa_female_adult_53_years	chr19	11196112	11196173	11196131	-	High_confidence	15	16	53	2.867438	4.290547	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.886792
esophagus_muscularis_mucosa_female_adult_53_years	chr4	185643466	185643594	185643592	-	RAMPAGE_only	7	12	65	3.516669	4.954784	chr4	185643014	185643625	LINE|L2|L2b	-	chr4	185639961	185656680	STRG.24092.19	-	185639961,185646667,185649466,185651783,185652661,185656614	185646071,185646782,185649656,185651828,185652728,185656680	0.984615
esophagus_muscularis_mucosa_female_adult_53_years	chr1	202551973	202551995	202551973	+	RAMPAGE_only	7	7	25	1.352565	4.163856	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.520000
esophagus_muscularis_mucosa_female_adult_53_years	chr6	43013345	43013393	43013392	-	High_confidence	15	15	30	1.623078	4.573557	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.966667
esophagus_muscularis_mucosa_female_adult_53_years	chr20	44696111	44696112	44696111	-	High_confidence	18	20	22	1.190257	3.748995	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.772727
esophagus_muscularis_mucosa_female_adult_53_years	chr22	37755611	37755658	37755657	+	RAMPAGE_only	3	3	7	0.378718	2.521641	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	0.571429
esophagus_muscularis_mucosa_female_adult_53_years	chr6	39865005	39865045	39865027	+	RAMPAGE_only	3	3	15	0.811539	3.773557	chr6	39865016	39865115	DNA|TcMar-Tigger|Tigger19b	-	chr6	39867312	39868879	DAAM2|ENST00000632657.1	+	39867312	39868879	0.600000
esophagus_muscularis_mucosa_female_adult_53_years	chr8	61578141	61578142	61578141	+	High_confidence	83	83	83	4.490516	5.045852	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	785	1011	1930	104.418024	4.963810	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.986010
esophagus_muscularis_mucosa_female_adult_53_years	chr11	123061164	123061316	123061256	-	High_confidence	10	14	150	8.115390	5.749183	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.993333
esophagus_muscularis_mucosa_female_adult_53_years	chr19	9140390	9140428	9140393	+	High_confidence	47	47	188	10.171289	6.161991	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.819149
esophagus_muscularis_mucosa_female_adult_53_years	chr4	185644294	185644583	185644581	-	RAMPAGE_only	19	26	268	14.499498	6.603870	chr4	185644514	185644746	SINE|MIR|MIR	+	chr4	185639961	185656680	STRG.24092.19	-	185639961,185646667,185649466,185651783,185652661,185656614	185646071,185646782,185649656,185651828,185652728,185656680	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	8	8	8	0.432821	2.500000	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr9	89479889	89479890	89479889	-	High_confidence	15	15	15	0.811539	2.789898	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89402924	89479890	SEMA4D|ENST00000540475.5	-	89402924,89405350,89455887,89479571	89403016,89405699,89455953,89479890	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr10	95437804	95437822	95437804	-	RAMPAGE_only	3	3	8	0.432821	2.807355	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.750000
esophagus_muscularis_mucosa_female_adult_53_years	chr4	87530853	87530910	87530853	-	High_confidence	3	3	13	0.703334	3.084963	chr4	87530812	87530989	SINE|MIR|MIR1_Amn	-	chr4	87494439	87531049	SPARCL1|ENST00000512317.5	-	87494439,87494980,87499520,87529044,87530544,87530977	87494598,87495127,87499585,87529101,87530631,87531049	0.769231
esophagus_muscularis_mucosa_female_adult_53_years	chr2	229232040	229232054	229232053	-	High_confidence	29	30	97	5.247953	5.661742	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.896907
esophagus_muscularis_mucosa_female_adult_53_years	chr17	47067498	47067518	47067498	-	High_confidence	207	214	897	48.530035	5.991624	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.939799
esophagus_muscularis_mucosa_female_adult_53_years	chr11	64226142	64226180	64226158	-	High_confidence	120	123	560	30.297458	6.874011	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.982143
esophagus_muscularis_mucosa_female_adult_53_years	chr16	2757779	2757801	2757779	+	High_confidence	3	4	9	0.486923	2.947703	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr12	6493747	6493748	6493747	-	High_confidence	9	9	13	0.703334	2.918296	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6492151	6493718	MRPL51|ENST00000543959.5	-	6492151,6492861,6493673	6492467,6492972,6493718	0.538462
esophagus_muscularis_mucosa_female_adult_53_years	chr8	38825317	38825367	38825360	+	RAMPAGE_only	15	15	92	4.977439	5.507713	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.956522
esophagus_muscularis_mucosa_female_adult_53_years	chr1	155058715	155058785	155058772	+	High_confidence	7	7	21	1.136155	3.748995	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.952381
esophagus_muscularis_mucosa_female_adult_53_years	chr2	10844241	10844267	10844241	+	High_confidence	12	12	61	3.300259	5.237874	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844255	10885118	STRG.7788.3	+	10844255,10884833	10844505,10885118	0.540984
esophagus_muscularis_mucosa_female_adult_53_years	chr6	79631402	79631453	79631402	+	High_confidence	2	2	9	0.486923	2.725481	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr6	145815093	145815118	145815093	+	High_confidence	2	3	7	0.378718	2.521641	chr6	145815053	145815170	SINE|MIR|MIR3	-	chr6	145814911	145886585	AL356599.1|ENST00000606388.5	+	145814911,145828360,145883204	145815431,145828420,145886585	0.571429
esophagus_muscularis_mucosa_female_adult_53_years	chr6	30492945	30493249	30493071	+	RAMPAGE_only	12	12	114	6.167697	5.543331	chr6	30493011	30493324	SINE|Alu|AluSc8	+	chr6	30489466	30494205	HLA-E|ENST00000376630.4	+	30489466,30489725,30490239,30491136,30491536,30492403,30492540,30492748	30489595,30489995,30490515,30491412,30491653,30492436,30492583,30494205	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr22	42721262	42721280	42721262	-	High_confidence	8	8	27	1.460770	3.348084	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.925926
esophagus_muscularis_mucosa_female_adult_53_years	chr8	107362995	107363040	107363039	-	RAMPAGE_only	7	7	29	1.568975	4.282484	chr8	107363039	107363288	SINE|MIR|MIRc	+	chr8	107251511	107336522	ANGPT1|ENST00000520734.5	-	107251511,107264220,107284681,107293935,107303239,107321895,107336149,107336383	107252015,107264351,107284848,107294037,107303367,107322128,107336271,107336522	0.689655
esophagus_muscularis_mucosa_female_adult_53_years	chr2	219420996	219421047	219420996	+	RAMPAGE_only	3	3	10	0.541026	2.921928	chr2	219420988	219421091	SINE|MIR|MIRc	+	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr12	28825945	28825960	28825945	-	High_confidence	5	6	13	0.703334	3.022055	chr12	28825676	28826170	LTR|ERVL|MLT2B3	-	chr12	28821974	28825831	AC022081.1|ENST00000537327.1	-	28821974,28825697	28822273,28825831	0.923077
esophagus_muscularis_mucosa_female_adult_53_years	chr3	29280838	29280899	29280876	-	High_confidence	3	3	14	0.757436	3.180833	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.571429
esophagus_muscularis_mucosa_female_adult_53_years	chr1	113759884	113759899	113759884	-	High_confidence	3	3	9	0.486923	3.000000	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.555556
esophagus_muscularis_mucosa_female_adult_53_years	chr19	11196205	11196225	11196222	-	High_confidence	4	4	10	0.541026	2.921928	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.800000
esophagus_muscularis_mucosa_female_adult_53_years	chr20	17573071	17573090	17573071	+	RAMPAGE_only	33	33	77	4.165900	5.420536	chr20	17572958	17573157	LTR|ERV1|MER92D	-	chr20	17570089	17607222	DSTN|ENST00000449141.2	+	17570089,17600737,17604554,17605109,17607036	17570211,17601045,17604631,17605211,17607222	0.714286
esophagus_muscularis_mucosa_female_adult_53_years	chr6	28354137	28354200	28354152	-	High_confidence	7	7	49	2.651028	4.449995	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329373	28354186	ZSCAN31|ENST00000446222.5	-	28329373,28336789,28353861,28354130	28329778,28336943,28353952,28354186	0.612245
esophagus_muscularis_mucosa_female_adult_53_years	chr10	29465746	29465747	29465746	+	RAMPAGE_only	15	15	16	0.865642	2.872906	chr10	29465779	29466024	LINE|L1|L1M5	+	chr10	29470173	29471254	STRG.45879.10	+	29470173,29471137	29470483,29471254	0.812500
esophagus_muscularis_mucosa_female_adult_53_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	8	8	8	0.432821	2.750000	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	18	18	22	1.190257	3.921928	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.818182
esophagus_muscularis_mucosa_female_adult_53_years	chr18	66670192	66670193	66670192	-	RAMPAGE_only	16	17	22	1.190257	3.141446	chr18	66669951	66670217	LINE|L2|L2	+	chr18	66501186	66604138	CDH19|NR_073130.1	-	66501186,66508994,66511567,66529844,66534985,66543970,66544718,66551093,66554404,66568415,66572009,66603953	66505302,66509218,66511685,66529966,66535107,66544224,66544903,66551258,66554524,66568710,66572316,66604138	0.909091
esophagus_muscularis_mucosa_female_adult_53_years	chr16	23124430	23124458	23124430	-	RAMPAGE_only	4	4	13	0.703334	2.719295	chr16	23124017	23124439	DNA|TcMar-Tigger|Tigger15a	+	chr16	23061405	23149270	USP31|ENST00000219689.11	-	23061405,23072044,23073721,23079945,23082437,23084859,23085584,23087091,23087723,23090623,23102318,23105440,23106212,23106398,23108045,23148637	23069616,23072197,23073880,23080171,23082557,23084989,23085662,23087186,23087835,23090804,23102463,23105576,23106305,23106487,23108183,23149270	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr8	99891947	99892057	99892056	-	RAMPAGE_only	117	117	210	11.361547	4.977093	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr20	50130092	50130118	50130101	-	High_confidence	19	19	84	4.544619	5.234425	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50124043	50130143	STRG.75300.6	-	50124043,50127974,50129545,50130051	50125179,50128187,50129690,50130143	0.976190
esophagus_muscularis_mucosa_female_adult_53_years	chr18	7946878	7946898	7946897	+	High_confidence	12	12	31	1.677181	3.768555	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.838710
esophagus_muscularis_mucosa_female_adult_53_years	chr19	50016128	50016157	50016128	-	RAMPAGE_only	3	3	7	0.378718	2.521641	chr19	50016092	50016166	DNA|hAT-Ac|OldhAT1	-	chr19	49994862	50020647	VRK3|ENST00000599342.5	-	49994862,50000789,50007568,50009235,50015731,50016023,50020584	49994919,50000854,50007826,50009385,50015793,50016163,50020647	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	217937072	217937078	217937072	-	RAMPAGE_only	4	4	9	0.486923	2.750000	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217803445	217944005	TNS1|ENST00000611415.4	-	217803445,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217830366,217831454,217835090,217836014,217847509,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217906334,217907209,217920194,217943864	217804603,217808107,217808671,217809991,217810319,217812445,217813304,217813816,217814998,217818759,217821938,217830390,217831547,217835166,217836211,217849087,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217906385,217907251,217920236,217944005	0.777778
esophagus_muscularis_mucosa_female_adult_53_years	chr2	130428509	130428534	130428523	-	High_confidence	8	9	26	1.406668	3.783465	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046259.1	-	130416749,130419070,130425090,130425913,130427703	130418298,130419245,130425158,130426038,130428546	0.961538
esophagus_muscularis_mucosa_female_adult_53_years	chr20	56367530	56367555	56367554	+	RAMPAGE_only	3	3	14	0.757436	3.334679	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	0.928571
esophagus_muscularis_mucosa_female_adult_53_years	chr3	54889135	54889161	54889136	+	RAMPAGE_only	3	5	11	0.595129	2.921928	chr3	54888995	54889708	LINE|L2|L2b	-	chr3	54123460	55074557	CACNA2D3|ENST00000471363.5	+	54123460,54320441,54386714,54503491,54562799,54569794,54569953,54581802,54627786,54642127,54752598,54764217,54837158,54838567,54846392,54871538,54879017,54880795,54885280,54885488,54887958,54891354,54896748,54899787,54968449,54969799,54984607,54987682,55004762,55007789,55009387,55018205,55073444,55073776,55074113	54123594,54320558,54386774,54503654,54562931,54569855,54570104,54581877,54627876,54642241,54752677,54764351,54837230,54838648,54846467,54871622,54879089,54880863,54885326,54885586,54888052,54891450,54896870,54899868,54968511,54969844,54984670,54987753,55004838,55007842,55009443,55018317,55073557,55073859,55074557	0.636364
esophagus_muscularis_mucosa_female_adult_53_years	chr8	2727247	2727272	2727247	+	High_confidence	4	4	12	0.649231	3.418296	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.583333
esophagus_muscularis_mucosa_female_adult_53_years	chr21	28750662	28750671	28750670	-	RAMPAGE_only	9	11	22	1.190257	3.341446	chr21	28750417	28750720	SINE|Alu|AluSz	+	chr21	28432358	28772540	STRG.76276.5	-	28432358,28482956,28577274,28626584,28771993	28446472,28483069,28577380,28626676,28772540	0.909091
esophagus_muscularis_mucosa_female_adult_53_years	chr11	123060156	123060256	123060174	-	High_confidence	23	24	276	14.932318	5.619344	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.536232
esophagus_muscularis_mucosa_female_adult_53_years	chr10	122127024	122127025	122127024	+	High_confidence	14	15	15	0.811539	3.240224	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126951	122237522	STRG.48199.9	+	122126951,122132608,122195039,122210396,122215390,122216626,122224725,122226365,122227836,122237394	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237522	0.733333
esophagus_muscularis_mucosa_female_adult_53_years	chr7	101308295	101308300	101308299	+	High_confidence	5	7	11	0.595129	2.921928	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.909091
esophagus_muscularis_mucosa_female_adult_53_years	chr15	94099309	94099353	94099352	-	High_confidence	6	6	20	1.082052	3.784184	chr15	94099050	94099714	LINE|L1|L1M4a2	+	chr15	94064384	94099339	STRG.63609.1	-	94064384,94066768,94099256	94065292,94066879,94099339	0.800000
esophagus_muscularis_mucosa_female_adult_53_years	chr9	39810033	39810099	39810033	-	High_confidence	19	19	83	4.490516	4.941345	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803521	39810013	STRG.42678.2	-	39803521,39809485,39809730	39803859,39809615,39810013	0.915663
esophagus_muscularis_mucosa_female_adult_53_years	chr1	202582644	202582664	202582663	+	RAMPAGE_only	3	3	9	0.486923	2.750000	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.888889
esophagus_muscularis_mucosa_female_adult_53_years	chr20	36890526	36890766	36890642	-	RAMPAGE_only	27	32	521	28.187456	6.001383	chr20	36890464	36890776	SINE|Alu|AluSq2	-	chr20	36890418	36893066	SAMHD1|ENST00000644250.1	-	36890418,36892618	36891794,36893066	0.558541
esophagus_muscularis_mucosa_female_adult_53_years	chr6	28354035	28354067	28354035	-	High_confidence	5	5	26	1.406668	4.083856	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329610	28354065	ZSCAN31|ENST00000444081.5	-	28329610,28336789,28337798,28353861	28329714,28336943,28337893,28354065	0.500000
esophagus_muscularis_mucosa_female_adult_53_years	chr4	81154211	81154248	81154221	-	High_confidence	12	12	30	1.623078	3.909368	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.866667
esophagus_muscularis_mucosa_female_adult_53_years	chr20	38985964	38985986	38985964	+	High_confidence	22	23	91	4.923337	5.578560	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38985964	39039721	STRG.74908.5	+	38985964,38988812,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38986012,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.945055
esophagus_muscularis_mucosa_female_adult_53_years	chr16	4239746	4239749	4239748	-	High_confidence	7	10	13	0.703334	2.777363	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr1	171207748	171207774	171207773	+	High_confidence	5	5	17	0.919744	3.572469	chr1	171207821	171208000	DNA|hAT-Charlie|MER5A	+	chr1	171207542	171209207	FMO2|ENST00000488431.1	+	171207542,171208793	171207790,171209207	0.941176
esophagus_muscularis_mucosa_female_adult_53_years	chr1	184793829	184793957	184793829	-	RAMPAGE_only	27	28	130	7.033338	4.738985	chr1	184793749	184793862	LINE|L2|L2c	+	chr1	184791029	184974550	FAM129A|ENST00000367511.3	-	184791029,184798078,184803584,184805945,184808073,184818637,184823166,184823637,184831846,184884632,184890107,184894074,184899178,184974301	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184823742,184831962,184884800,184890222,184894206,184899309,184974550	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr3	139344537	139344565	139344547	+	High_confidence	15	15	43	2.326412	4.491460	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.883721
esophagus_muscularis_mucosa_female_adult_53_years	chr13	110057209	110057258	110057241	-	High_confidence	5	6	19	1.027949	2.710777	chr13	110056667	110057319	LTR|ERV1|LTR58	+	chr13	110036196	110057286	AL355974.2|ENST00000617298.1	-	110036196,110057125	110036971,110057286	0.894737
esophagus_muscularis_mucosa_female_adult_53_years	chr15	89041057	89041060	89041057	+	High_confidence	4	4	9	0.486923	3.000000	chr15	89040910	89041343	LTR|ERVL-MaLR|MLT1H2	+	chr15	89041222	89082819	AC013565.1|ENST00000565938.1	+	89041222,89070090,89075295,89082490	89041300,89070191,89075384,89082819	0.555556
esophagus_muscularis_mucosa_female_adult_53_years	chr1	212792424	212792445	212792444	-	High_confidence	5	5	12	0.649231	2.913977	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.916667
esophagus_muscularis_mucosa_female_adult_53_years	chr19	51795165	51795187	51795186	+	High_confidence	4	4	14	0.757436	3.039149	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr20	44714455	44714470	44714469	+	High_confidence	6	6	11	0.595129	2.921928	chr20	44714278	44714680	LINE|L2|L2b	+	chr20	44714843	44727812	WISP2|NM_001323370.1	+	44714843,44715365,44719896,44724737,44727086	44715161,44715450,44720113,44724992,44727812	0.909091
esophagus_muscularis_mucosa_female_adult_53_years	chr19	47780107	47780108	47780107	+	High_confidence	7	7	11	0.595129	2.845351	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.727273
esophagus_muscularis_mucosa_female_adult_53_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	35	37	43	2.326412	4.402100	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.767442
esophagus_muscularis_mucosa_female_adult_53_years	chr1	162781221	162781295	162781286	+	RAMPAGE_only	7	8	49	2.651028	4.655127	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr7	111413972	111413995	111413976	-	RAMPAGE_only	8	8	18	0.973847	3.286896	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	110663300	111390750	IMMP2L|ENST00000489381.1	-	110663300,110664823,110963499,111390570	110663721,110665012,110963565,111390750	0.722222
esophagus_muscularis_mucosa_female_adult_53_years	chr2	201116007	201116039	201116007	+	High_confidence	5	5	17	0.919744	3.175123	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	1745	1967	4668	252.550951	5.351714	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.961868
esophagus_muscularis_mucosa_female_adult_53_years	chr21	39321623	39321656	39321623	-	High_confidence	9	9	25	1.352565	4.168296	chr21	39321465	39322038	LINE|L2|L2a	+	chr21	39298089	39321559	BRWD1|ENST00000470108.5	-	39298089,39312840,39313071,39313240,39321025	39298582,39312900,39313101,39313299,39321559	0.720000
esophagus_muscularis_mucosa_female_adult_53_years	chr12	9065161	9065174	9065173	+	High_confidence	19	19	85	4.598721	5.450420	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.776471
esophagus_muscularis_mucosa_female_adult_53_years	chr8	53523862	53523907	53523862	-	High_confidence	6	6	30	1.623078	4.415061	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr1	202585547	202585626	202585547	+	RAMPAGE_only	3	3	22	1.190257	4.011365	chr1	202585391	202585553	SINE|MIR|MIR3	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.954545
esophagus_muscularis_mucosa_female_adult_53_years	chr12	12927701	12927744	12927733	+	High_confidence	16	16	41	2.218207	4.900116	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927725	12980307	GPRC5D-AS1|ENST00000545914.5	+	12927725,12978940,12979523,12979999	12927803,12979021,12979622,12980307	0.609756
esophagus_muscularis_mucosa_female_adult_53_years	chr6	125828183	125828184	125828183	+	RAMPAGE_only	6	7	9	0.486923	2.725481	chr6	125827884	125828197	LINE|L2|L2a	-	chr6	125815217	125855590	NCOA7|ENST00000487635.1	+	125815217,125855019	125815404,125855590	0.666667
esophagus_muscularis_mucosa_female_adult_53_years	chr9	68975832	68975846	68975842	-	RAMPAGE_only	20	23	54	2.921541	4.712949	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68971084	68972642	STRG.43051.1	-	68971084	68972642	0.685185
esophagus_muscularis_mucosa_female_adult_53_years	chr11	119314501	119314557	119314501	-	RAMPAGE_only	5	5	33	1.785386	4.392583	chr11	119314166	119314455	SINE|Alu|AluJr	-	chr11	119308528	119317116	MCAM|ENST00000264036.5	-	119308528,119310348,119310755,119311089,119311279,119311529,119311807,119312051,119312265,119312526,119312769,119314488,119314678,119314832,119315138,119317034	119309915,119310466,119310903,119311185,119311421,119311651,119311949,119312170,119312428,119312648,119312949,119314576,119314749,119315040,119315263,119317116	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr19	11539683	11539706	11539683	+	High_confidence	11	13	43	2.326412	5.019061	chr19	11539660	11539789	SINE|MIR|MIRb	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	0.906977
esophagus_muscularis_mucosa_female_adult_53_years	chr17	41871819	41871820	41871819	-	RAMPAGE_only	7	7	11	0.595129	2.913977	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.818182
esophagus_muscularis_mucosa_female_adult_53_years	chr7	2242922	2242923	2242922	+	High_confidence	8	8	8	0.432821	2.500000	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr11	13419689	13419743	13419689	-	RAMPAGE_only	4	4	15	0.811539	3.240224	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.933333
esophagus_muscularis_mucosa_female_adult_53_years	chr13	27445106	27445120	27445119	-	RAMPAGE_only	7	8	16	0.865642	2.858459	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr4	102431247	102431250	102431249	-	High_confidence	4	8	12	0.649231	3.095795	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.750000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	215383357	215383455	215383357	-	RAMPAGE_only	24	24	253	13.687959	6.102389	chr2	215383001	215383307	SINE|Alu|AluSz	-	chr2	215375632	215381329	FN1|ENST00000474036.1	-	215375632,215376497,215378174,215379129,215380810	215375718,215376674,215378262,215379317,215381329	0.936759
esophagus_muscularis_mucosa_female_adult_53_years	chr1	161517991	161518026	161518025	+	RAMPAGE_only	5	7	20	1.082052	3.308695	chr1	161517820	161518039	LTR|ERV1|MER57-int	+	chr1	161514619	161518603	FCGR2A|ENST00000486608.1	+	161514619,161517974	161514874,161518603	0.950000
esophagus_muscularis_mucosa_female_adult_53_years	chr3	536198	536258	536198	+	High_confidence	24	33	143	7.736672	6.078192	chr3	535186	536320	LTR|ERV1|LTR12D	-	chr3	536230	846015	LINC01266|ENST00000420823.5	+	536230,592104,750214,840714,842375	536327,592183,750250,840810,846015	0.559441
esophagus_muscularis_mucosa_female_adult_53_years	chr4	87524679	87524705	87524700	-	RAMPAGE_only	6	6	23	1.244360	4.088779	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87473417	87529092	SPARCL1|ENST00000503414.5	-	87473417,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87497130,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87497239,87499585,87529092	0.782609
esophagus_muscularis_mucosa_female_adult_53_years	chr8	116648828	116648884	116648883	-	RAMPAGE_only	7	7	24	1.298462	3.754442	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.916667
esophagus_muscularis_mucosa_female_adult_53_years	chr20	50172544	50172595	50172594	+	High_confidence	8	8	22	1.190257	4.186704	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172589	50176671	LINC01273|ENST00000411453.2	+	50172589,50172922,50176280	50172788,50173017,50176671	0.727273
esophagus_muscularis_mucosa_female_adult_53_years	chr5	109383497	109383500	109383499	-	High_confidence	4	8	11	0.595129	2.646439	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.909091
esophagus_muscularis_mucosa_female_adult_53_years	chr7	80369568	80369575	80369568	+	High_confidence	4	4	8	0.432821	2.750000	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr1	168137436	168137481	168137436	-	High_confidence	4	4	20	1.082052	3.787144	chr1	168137391	168137473	LINE|L2|L2b	-	chr1	168085277	168137573	STRG.5271.2	-	168085277,168087584,168090563,168096507,168104476,168114455,168134905,168137164	168085796,168087704,168090668,168097232,168104894,168114549,168135036,168137573	0.950000
esophagus_muscularis_mucosa_female_adult_53_years	chr13	52570278	52570324	52570323	+	RAMPAGE_only	8	9	14	0.757436	3.238901	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.857143
esophagus_muscularis_mucosa_female_adult_53_years	chr10	45000453	45000504	45000503	+	High_confidence	9	11	31	1.677181	4.284684	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr3	16228269	16228356	16228314	+	RAMPAGE_only	6	6	37	2.001796	4.414439	chr3	16228359	16228663	SINE|Alu|AluSx	+	chr3	16219399	16229745	GALNT15|ENST00000617544.3	+	16219399,16219909,16222614,16227353,16227444	16219534,16220014,16222758,16227443,16229745	0.945946
esophagus_muscularis_mucosa_female_adult_53_years	chr2	11201313	11201398	11201313	-	RAMPAGE_only	6	6	56	3.029746	4.910918	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11179760	11221340	STRG.7846.2	-	11179760,11184665,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197	11183440,11185701,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221340	0.982143
esophagus_muscularis_mucosa_female_adult_53_years	chr6	108960797	108960828	108960827	+	RAMPAGE_only	3	3	10	0.541026	3.121928	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108959459	108965117	ARMC2|ENST00000481850.1	+	108959459,108961571,108962013,108964179,108964979	108959519,108961694,108962127,108964312,108965117	0.600000
esophagus_muscularis_mucosa_female_adult_53_years	chrX	136168194	136168209	136168194	+	High_confidence	10	10	16	0.865642	3.452820	chrX	136168049	136168241	SINE|MIR|MIR	-	chrX	136168193	136208575	FHL1|ENST00000434885.5	+	136168193,136169906,136206406,136207015,136207791,136208454	136168267,136169980,136206588,136207190,136207961,136208575	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	27	27	28	1.514873	3.376396	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.964286
esophagus_muscularis_mucosa_female_adult_53_years	chr2	46904629	46904667	46904629	-	RAMPAGE_only	2	2	11	0.595129	2.721928	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.909091
esophagus_muscularis_mucosa_female_adult_53_years	chr19	50379820	50379869	50379868	+	RAMPAGE_only	4	4	23	1.244360	3.447262	chr19	50379903	50379991	SINE|MIR|MIRc	+	chr19	50377244	50382944	NR1H2|ENST00000593926.5	+	50377244,50377586,50377732,50378148,50378521,50379001,50379779,50381965,50382455	50377328,50377648,50377870,50378439,50378796,50379181,50379879,50382174,50382944	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr1	20685285	20685303	20685302	-	High_confidence	4	4	9	0.486923	2.947703	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20664013	20685283	STRG.805.7	-	20664013,20666213,20670420,20671937,20682652,20684808,20685251	20664762,20666331,20670488,20672196,20682884,20685020,20685283	0.888889
esophagus_muscularis_mucosa_female_adult_53_years	chr3	188153177	188153196	188153195	+	High_confidence	5	5	10	0.541026	2.725481	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.800000
esophagus_muscularis_mucosa_female_adult_53_years	chr7	6590246	6590272	6590251	+	High_confidence	3	3	21	1.136155	3.653757	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.523810
esophagus_muscularis_mucosa_female_adult_53_years	chr7	154928492	154928506	154928503	+	High_confidence	13	13	32	1.731283	4.625000	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr1	184811018	184811045	184811044	-	RAMPAGE_only	4	5	12	0.649231	2.845351	chr1	184810857	184811494	LTR|ERV1|MER57-int	+	chr1	184794117	184868041	FAM129A|ENST00000487074.5	-	184794117,184798078,184803584,184805945,184808073,184818637,184823166,184831846,184867863	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184831962,184868041	0.500000
esophagus_muscularis_mucosa_female_adult_53_years	chr15	56737902	56737906	56737904	-	RAMPAGE_only	33	76	88	4.761029	5.435123	chr15	56737845	56738254	LTR|ERVL-MaLR|MLT1J2	+	chr15	56630175	56734086	ZNF280D|NM_001288588.1	-	56630175,56635194,56642951,56654197,56654384,56658423,56666394,56666678,56668822,56676669,56677573,56678663,56682253,56689040,56689299,56693097,56700932,56701172,56704120,56707081,56707262,56733457	56632122,56635250,56642997,56654234,56654503,56658486,56666535,56666986,56668957,56676816,56677674,56678821,56682477,56689150,56689470,56693215,56701072,56701238,56704267,56707143,56707306,56734086	0.875000
esophagus_muscularis_mucosa_female_adult_53_years	chr22	31082940	31082941	31082940	+	High_confidence	7	7	8	0.432821	2.521641	chr22	31082905	31083026	SINE|MIR|MIRc	-	chr22	31082859	31104623	SMTN|ENST00000619644.4	+	31082859,31083178,31087964,31088512,31088698,31088871,31089698,31090107,31090807,31090960,31091674,31093783,31095302,31095533,31096732,31096997,31097268,31098666,31099061,31099744,31104315	31083002,31083309,31088113,31088606,31088777,31088969,31090019,31090180,31090879,31091482,31091847,31093876,31095455,31095609,31096897,31097060,31097338,31098840,31099179,31099896,31104623	0.875000
esophagus_muscularis_mucosa_female_adult_53_years	chr14	81170392	81170414	81170392	-	High_confidence	5	5	15	0.811539	3.324863	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.933333
esophagus_muscularis_mucosa_female_adult_53_years	chr19	16416895	16416922	16416914	+	High_confidence	19	19	54	2.921541	4.854347	chr19	16416905	16416941	SINE|MIR|MIR3	-	chr19	16416879	16431701	STRG.71747.1	+	16416879,16431675	16417468,16431701	0.777778
esophagus_muscularis_mucosa_female_adult_53_years	chr5	151182135	151182214	151182135	-	RAMPAGE_only	3	4	27	1.460770	4.282484	chr5	151182086	151182249	SINE|MIR|MIRc	+	chr5	151181234	151185215	CCDC69|ENST00000519448.1	-	151181234,151184343	151183614,151185215	0.962963
esophagus_muscularis_mucosa_female_adult_53_years	chr3	16228411	16228484	16228483	+	RAMPAGE_only	5	6	34	1.839489	4.140320	chr3	16228359	16228663	SINE|Alu|AluSx	+	chr3	16219399	16229745	GALNT15|ENST00000617544.3	+	16219399,16219909,16222614,16227353,16227444	16219534,16220014,16222758,16227443,16229745	0.941176
esophagus_muscularis_mucosa_female_adult_53_years	chrX	5726116	5726132	5726116	-	High_confidence	22	23	57	3.083848	4.578333	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719230	5726281	STRG.78526.1	-	5719230,5725929	5719872,5726281	0.929825
esophagus_muscularis_mucosa_female_adult_53_years	chr12	46266488	46266535	46266488	-	High_confidence	11	13	34	1.839489	4.226410	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.941176
esophagus_muscularis_mucosa_female_adult_53_years	chr5	96979702	96979738	96979721	+	RAMPAGE_only	2	2	9	0.486923	2.725481	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr10	98391170	98391171	98391170	-	RAMPAGE_only	6	6	8	0.432821	3.000000	chr10	98391143	98391387	LINE|L2|L2c	+	chr10	98383564	98411877	PYROXD2|ENST00000483923.5	-	98383564,98384946,98387200,98390597,98390870,98392431,98392941,98395195,98395390,98397344,98400101,98407581,98407903,98410612,98411174	98383868,98385067,98387307,98390754,98391082,98392566,98393083,98395293,98395452,98397498,98400257,98407655,98407997,98410958,98411877	0.875000
esophagus_muscularis_mucosa_female_adult_53_years	chr20	44564090	44564137	44564090	+	High_confidence	3	3	13	0.703334	3.251629	chr20	44563829	44564153	LINE|L1|L1M5	-	chr20	44564200	44619037	STRG.75128.5	+	44564200,44582584,44589796,44614533,44618284	44564340,44582731,44589866,44614707,44619037	0.846154
esophagus_muscularis_mucosa_female_adult_53_years	chr8	85378112	85378113	85378112	-	High_confidence	11	12	12	0.649231	3.095795	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.916667
esophagus_muscularis_mucosa_female_adult_53_years	chr4	86453190	86453232	86453195	-	High_confidence	10	21	78	4.220003	4.741056	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016074	86453196	MAPK10|ENST00000641854.1	-	86016074,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86107352,86159467,86194407,86354644,86453196	0.935897
esophagus_muscularis_mucosa_female_adult_53_years	chr11	77175226	77175303	77175302	+	High_confidence	16	19	52	2.813335	4.863713	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175301	77190818	STRG.50753.1	+	77175301,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190818	0.942308
esophagus_muscularis_mucosa_female_adult_53_years	chr7	134527596	134527597	134527596	+	High_confidence	9	9	9	0.486923	2.641604	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr5	171400153	171400187	171400153	+	RAMPAGE_only	7	8	39	2.110002	4.560667	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171407492	171410884	NPM1|ENST00000524204.1	+	171407492,171410526	171407774,171410884	0.512821
esophagus_muscularis_mucosa_female_adult_53_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	14	14	41	2.218207	3.772339	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.975610
esophagus_muscularis_mucosa_female_adult_53_years	chr15	98017759	98017790	98017769	-	High_confidence	106	115	399	21.586939	7.236238	chr15	98016264	98017842	LINE|L2|L2a	+	chr15	98016124	98017798	STRG.63803.2	-	98016124	98017798	0.721805
esophagus_muscularis_mucosa_female_adult_53_years	chr5	67646810	67646812	67646810	-	RAMPAGE_only	28	47	53	2.867438	5.172234	chr5	67646558	67646761	SINE|MIR|MIRc	-	chr5	67628582	67633600	STRG.25371.1	-	67628582	67633600	0.547170
esophagus_muscularis_mucosa_female_adult_53_years	chr7	87040212	87040223	87040222	-	RAMPAGE_only	9	9	23	1.244360	4.088779	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.652174
esophagus_muscularis_mucosa_female_adult_53_years	chr1	8240004	8240030	8240029	+	RAMPAGE_only	3	3	10	0.541026	2.641604	chr1	8239979	8240262	SINE|Alu|AluSc8	-	chr1	8248776	8249009	STRG.298.1	+	8248776	8249009	0.900000
esophagus_muscularis_mucosa_female_adult_53_years	chr9	73080412	73080434	73080412	-	High_confidence	2	2	9	0.486923	2.500000	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.777778
esophagus_muscularis_mucosa_female_adult_53_years	chr19	40608591	40608592	40608591	+	RAMPAGE_only	9	9	13	0.703334	3.022055	chr19	40608638	40608924	SINE|Alu|AluSq2	+	chr19	40609745	40629817	LTBP4|ENST00000243562.13	+	40609745,40610531,40611858,40612072,40613064,40613403,40613915,40614314,40616888,40617099,40619346,40622400,40622949,40623603,40623935,40625856,40626974,40627704,40629395	40609871,40610657,40611984,40612192,40613196,40613529,40614038,40614446,40617020,40617225,40619493,40622667,40623021,40623732,40624082,40626009,40627355,40627857,40629817	0.615385
esophagus_muscularis_mucosa_female_adult_53_years	chrX	103536078	103536079	103536078	-	RAMPAGE_only	133	137	172	9.305648	6.565535	chrX	103535966	103536120	SINE|MIR|MIRb	+	chrX	103496487	103531019	STRG.80393.1	-	103496487,103523974,103526127,103526658,103530247,103530747	103500826,103524108,103526230,103526752,103530355,103531019	0.500000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	173182241	173182285	173182241	+	RAMPAGE_only	7	7	30	1.623078	4.640224	chr2	173182099	173182382	LINE|L1|L1MB7	+	chr2	173075958	173268010	MAP3K20|ENST00000375213.7	+	173075958,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173229688,173232191,173232319,173238372,173239403,173258698,173261062,173263744,173266049	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173229733,173232222,173232459,173238435,173239496,173258815,173261137,173263895,173268010	0.833333
esophagus_muscularis_mucosa_female_adult_53_years	chr16	11587465	11587475	11587465	-	High_confidence	11	11	22	1.190257	3.617810	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.954545
esophagus_muscularis_mucosa_female_adult_53_years	chr7	44829343	44829349	44829348	-	RAMPAGE_only	12	14	20	1.082052	3.646439	chr7	44829318	44829620	SINE|Alu|AluSq2	+	chr7	44826790	44848077	H2AFV|ENST00000222690.10	-	44826790,44835528,44840898,44843276,44847968	44830163,44835658,44841012,44843354,44848077	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	173222139	173222181	173222156	+	RAMPAGE_only	4	4	17	0.919744	3.454822	chr2	173222007	173222227	SINE|Alu|AluJo	+	chr2	173075841	173227146	MAP3K20|ENST00000338983.7	+	173075841,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173221149	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173227146	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	36513728	36513757	36513756	+	High_confidence	8	9	13	0.703334	3.022055	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.769231
esophagus_muscularis_mucosa_female_adult_53_years	chr1	52708380	52708381	52708380	-	RAMPAGE_only	13	13	13	0.703334	2.873141	chr1	52708320	52708479	LINE|L2|L2c	+	chr1	52684450	52698366	COA7|ENST00000371538.4	-	52684450,52692726,52698220	52688168,52692867,52698366	0.923077
esophagus_muscularis_mucosa_female_adult_53_years	chr1	174874418	174874427	174874418	+	High_confidence	7	7	12	0.649231	3.022055	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.750000
esophagus_muscularis_mucosa_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	148	148	148	8.007185	5.098340	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.952703
esophagus_muscularis_mucosa_female_adult_53_years	chr12	28226006	28226032	28226028	+	RAMPAGE_only	3	3	17	0.919744	3.969816	chr12	28226041	28226162	LTR|ERVL-MaLR|MLT1L	+	chr12	28256003	28549240	CCDC91|ENST00000543809.5	+	28256003,28257201,28259363,28305648,28306741,28307644,28362437,28391303,28412753,28450160,28450349,28452477,28484051,28549062	28256078,28257245,28259442,28305806,28306945,28307749,28362515,28391411,28412938,28450253,28450418,28452654,28484165,28549240	0.705882
esophagus_muscularis_mucosa_female_adult_53_years	chrX	5726193	5726256	5726193	-	High_confidence	4	4	18	0.973847	3.499228	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5719230	5726281	STRG.78526.1	-	5719230,5725929	5719872,5726281	0.777778
esophagus_muscularis_mucosa_female_adult_53_years	chr3	134485443	134485496	134485470	-	High_confidence	6	6	31	1.677181	4.415061	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.967742
esophagus_muscularis_mucosa_female_adult_53_years	chr8	30508189	30508190	30508189	+	RAMPAGE_only	10	11	15	0.811539	3.506891	chr8	30507969	30508353	LTR|ERVL-MaLR|MLT1B	+	chr8	30479329	30547517	RBPMS|ENST00000522694.1	+	30479329,30504285,30544493,30545163,30547291	30479377,30504436,30544624,30545220,30547517	0.666667
esophagus_muscularis_mucosa_female_adult_53_years	chr14	96087538	96087539	96087538	+	RAMPAGE_only	6	6	9	0.486923	3.169925	chr14	96087499	96087670	SINE|MIR|MIR3	-	chr14	96039323	96093889	C14orf132|ENST00000555004.2	+	96039323,96086510	96039527,96093889	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr17	2975600	2975667	2975660	+	RAMPAGE_only	8	10	47	2.542822	4.958345	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2991344	3008090	RAP1GAP2|ENST00000574515.1	+	2991344,2995336,2998220,3005340,3005954,3008010	2991397,2995466,2998376,3005440,3006041,3008090	0.574468
esophagus_muscularis_mucosa_female_adult_53_years	chr4	4269609	4269614	4269609	-	High_confidence	13	14	34	1.839489	3.378928	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.941176
esophagus_muscularis_mucosa_female_adult_53_years	chr16	15862843	15862844	15862843	-	RAMPAGE_only	6	6	8	0.432821	2.500000	chr16	15862762	15863014	LINE|L1|L1MC2	+	chr16	15703786	15857033	MYH11|ENST00000576790.6	-	15703786,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15786732,15798687,15823411,15838269,15857033	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr7	158740251	158740306	158740274	-	RAMPAGE_only	11	11	55	2.975643	5.281182	chr7	158740209	158740388	LTR|ERV1|MER49	+	chr7	158733612	158744217	ESYT2|ENST00000435514.3	-	158733612,158734421,158735502,158737047,158739022,158741522,158743528	158734252,158734471,158735608,158737179,158739121,158741896,158744217	0.763636
esophagus_muscularis_mucosa_female_adult_53_years	chr10	95313131	95314091	95313131	-	RAMPAGE_only	46	47	1658	89.702116	7.477350	chr10	95313103	95313210	DNA|hAT-Tip100|UCON132b	+	chr10	95311772	95339327	SORBS1|ENST00000649911.1	-	95311772,95318319,95321962,95339132	95315126,95318432,95322153,95339327	0.999397
esophagus_muscularis_mucosa_female_adult_53_years	chr4	128570470	128570488	128570487	-	High_confidence	9	9	24	1.298462	4.251629	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr12	47753915	47753962	47753934	+	RAMPAGE_only	4	5	19	1.027949	3.826875	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47758577	47780307	SLC48A1|ENST00000547002.5	+	47758577,47760215,47772169,47779027,47780144	47758660,47760401,47772320,47779195,47780307	0.736842
esophagus_muscularis_mucosa_female_adult_53_years	chr4	119217578	119217624	119217578	+	RAMPAGE_only	2	2	12	0.649231	3.459432	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212740	119294746	STRG.22752.2	+	119212740,119214069,119217549,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119212873,119214222,119217673,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119294746	0.916667
esophagus_muscularis_mucosa_female_adult_53_years	chr19	5680258	5680261	5680260	-	High_confidence	3	5	7	0.378718	2.521641	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr14	81427421	81427462	81427421	-	High_confidence	3	4	25	1.352565	3.377797	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr8	56559496	56559497	56559496	-	High_confidence	169	174	208	11.253341	6.756561	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.524038
esophagus_muscularis_mucosa_female_adult_53_years	chr20	44738992	44738993	44738992	-	RAMPAGE_only	5	7	8	0.432821	2.521641	chr20	44738735	44739078	LTR|ERVL-MaLR|MLT1J2	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.500000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	55618850	55618889	55618869	-	High_confidence	8	8	38	2.055899	4.448861	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.973684
esophagus_muscularis_mucosa_female_adult_53_years	chr12	65464131	65464354	65464314	+	RAMPAGE_only	11	11	169	9.143340	5.237069	chr12	65464285	65464467	SINE|Alu|AluSc	+	chr12	65279484	65466868	MSRB3|ENST00000642404.1	+	65279484,65306862,65308528,65326825,65328525,65368997,65453727,65463154	65279517,65307026,65308655,65326934,65328603,65369026,65453825,65466868	0.994083
esophagus_muscularis_mucosa_female_adult_53_years	chr3	14047155	14047206	14047205	-	High_confidence	29	30	64	3.462567	4.794275	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14041552	14047165	STRG.14492.1	-	14041552,14046812	14041628,14047165	0.812500
esophagus_muscularis_mucosa_female_adult_53_years	chr14	32433160	32433163	32433162	+	High_confidence	11	16	21	1.136155	3.511085	chr14	32432769	32433226	LTR|ERVL-MaLR|MLT1J	-	chr14	32433163	32439032	AKAP6|ENST00000554449.1	+	32433163,32438673	32433817,32439032	0.809524
esophagus_muscularis_mucosa_female_adult_53_years	chr2	219434273	219434284	219434273	+	RAMPAGE_only	21	21	57	3.083848	5.258243	chr2	219433955	219434290	LINE|L2|L2c	+	chr2	219437274	219466861	SPEG|ENST00000498378.5	+	219437274,219443107,219444652,219444824,219447973,219451135,219451624,219461881,219462297,219464432,219466056	219437320,219443637,219444742,219445161,219449271,219451279,219451807,219462057,219462386,219464608,219466861	0.526316
esophagus_muscularis_mucosa_female_adult_53_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	28	31	62	3.354361	5.017156	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.919355
esophagus_muscularis_mucosa_female_adult_53_years	chr14	38948242	38948246	38948245	-	High_confidence	5	5	11	0.595129	2.846439	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	0.909091
esophagus_muscularis_mucosa_female_adult_53_years	chr1	184794125	184794163	184794125	-	RAMPAGE_only	3	3	18	0.973847	3.260785	chr1	184794122	184794174	LINE|L2|L2b	+	chr1	184791029	184974550	FAM129A|ENST00000367511.3	-	184791029,184798078,184803584,184805945,184808073,184818637,184823166,184823637,184831846,184884632,184890107,184894074,184899178,184974301	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184823742,184831962,184884800,184890222,184894206,184899309,184974550	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr8	143281669	143281687	143281686	-	High_confidence	41	42	117	6.330005	4.986434	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.769231
esophagus_muscularis_mucosa_female_adult_53_years	chr10	4206448	4207015	4206793	-	RAMPAGE_only	21	23	656	35.491308	6.660262	chr10	4206568	4206861	LINE|L2|L2a	+	chr10	4201140	4243912	LINC00702|ENST00000608792.1	-	4201140,4243503,4243822	4207166,4243687,4243912	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr14	44912790	44912819	44912790	-	High_confidence	5	5	13	0.703334	3.085055	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44895328	44912830	STRG.59054.1	-	44895328,44899229,44911756,44912452	44895555,44899313,44911860,44912830	0.769231
esophagus_muscularis_mucosa_female_adult_53_years	chr9	92536601	92536602	92536601	-	High_confidence	19	21	21	1.136155	3.471354	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.571429
esophagus_muscularis_mucosa_female_adult_53_years	chr16	20676161	20676202	20676201	-	High_confidence	10	10	19	1.027949	3.530493	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.894737
esophagus_muscularis_mucosa_female_adult_53_years	chr7	134432378	134432382	134432378	-	High_confidence	5	6	10	0.541026	2.947703	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.500000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	29114149	29114174	29114149	+	High_confidence	3	3	11	0.595129	2.921928	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.818182
esophagus_muscularis_mucosa_female_adult_53_years	chr5	172954173	172954233	172954232	+	RAMPAGE_only	2	2	8	0.432821	3.000000	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172958728	172969716	RPL26L1|ENST00000519974.5	+	172958728,172959864,172968458,172969412	172958801,172960041,172968599,172969716	0.875000
esophagus_muscularis_mucosa_female_adult_53_years	chrX	5726324	5726325	5726324	-	High_confidence	52	54	75	4.057695	4.543223	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.893333
esophagus_muscularis_mucosa_female_adult_53_years	chr3	33864056	33864079	33864056	+	RAMPAGE_only	4	4	16	0.865642	3.280639	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr17	42403507	42403803	42403636	-	RAMPAGE_only	13	15	223	12.064880	6.381826	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	0.977578
esophagus_muscularis_mucosa_female_adult_53_years	chr4	173369507	173369555	173369533	-	High_confidence	8	8	19	1.027949	3.366091	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.842105
esophagus_muscularis_mucosa_female_adult_53_years	chr11	65382641	65382646	65382641	-	High_confidence	6	6	18	0.973847	3.794653	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65381587	65382642	SLC25A45|ENST00000529431.1	-	65381587,65382485	65381969,65382642	0.555556
esophagus_muscularis_mucosa_female_adult_53_years	chr3	151531387	151531426	151531411	-	RAMPAGE_only	3	4	15	0.811539	3.506891	chr3	151528406	151534796	LINE|L1|L1PA7	+	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.866667
esophagus_muscularis_mucosa_female_adult_53_years	chr9	92536674	92536675	92536674	-	High_confidence	6	6	8	0.432821	2.750000	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr7	103353930	103353931	103353930	+	High_confidence	8	8	11	0.595129	2.921928	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.909091
esophagus_muscularis_mucosa_female_adult_53_years	chr6	77369144	77369166	77369144	-	RAMPAGE_only	6	6	28	1.514873	3.824539	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77151213	77273309	STRG.31013.1	-	77151213,77151818,77271339,77273026	77151280,77151974,77271493,77273309	0.535714
esophagus_muscularis_mucosa_female_adult_53_years	chr2	70257706	70257707	70257706	+	High_confidence	10	11	12	0.649231	3.418296	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr9	35657466	35657478	35657466	+	High_confidence	5	5	10	0.541026	3.121928	chr9	35657503	35657740	SINE|Alu|AluJb	+	chr9	35658289	35661503	CCDC107|NM_174923.2	+	35658289,35658575,35660400,35660556,35660745	35658485,35658727,35660461,35660647,35661503	0.900000
esophagus_muscularis_mucosa_female_adult_53_years	chr1	202585129	202585302	202585185	+	RAMPAGE_only	9	9	85	4.598721	4.088224	chr1	202585028	202585296	SINE|Alu|AluJb	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr21	44962756	44962791	44962790	+	High_confidence	28	32	97	5.247953	5.558474	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44962756	44978505	STRG.76876.4	+	44962756,44967033,44973196,44976679	44962856,44967181,44973265,44978505	0.969072
esophagus_muscularis_mucosa_female_adult_53_years	chr4	184537558	184537596	184537558	-	High_confidence	5	5	25	1.352565	4.323856	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.800000
esophagus_muscularis_mucosa_female_adult_53_years	chr19	3062922	3062983	3062982	-	High_confidence	82	89	443	23.967453	6.235049	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.979684
esophagus_muscularis_mucosa_female_adult_53_years	chr20	14226554	14226583	14226554	+	High_confidence	5	5	19	1.027949	3.511085	chr20	14226326	14227700	LTR|ERV1|LTR12C	+	chr20	14227379	14227807	STRG.74390.1	+	14227379	14227807	0.736842
esophagus_muscularis_mucosa_female_adult_53_years	chr22	42721166	42721167	42721166	-	High_confidence	21	21	23	1.244360	3.427333	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.913043
esophagus_muscularis_mucosa_female_adult_53_years	chr2	96638013	96638031	96638022	-	High_confidence	4	5	13	0.703334	3.251629	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.769231
esophagus_muscularis_mucosa_female_adult_53_years	chr5	109383442	109383449	109383448	-	High_confidence	4	4	12	0.649231	3.277613	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.916667
esophagus_muscularis_mucosa_female_adult_53_years	chr22	50785201	50785223	50785222	+	RAMPAGE_only	3	3	14	0.757436	3.085055	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.928571
esophagus_muscularis_mucosa_female_adult_53_years	chrX	103607563	103607580	103607563	+	High_confidence	8	8	19	1.027949	3.530493	chrX	103607556	103607707	SINE|MIR|MIRb	+	chrX	103607450	103609927	TCEAL3|ENST00000372628.5	+	103607450,103608603,103609042	103607716,103608673,103609927	0.842105
esophagus_muscularis_mucosa_female_adult_53_years	chrX	53546444	53546472	53546444	-	RAMPAGE_only	3	4	12	0.649231	3.084963	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53532095	53549505	HUWE1|ENST00000426907.5	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543885,53544559,53545028,53546435,53546703,53547672,53548958	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505	0.916667
esophagus_muscularis_mucosa_female_adult_53_years	chr12	50924078	50924079	50924078	+	High_confidence	20	29	29	1.568975	4.211261	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr22	30611034	30611061	30611060	+	RAMPAGE_only	5	6	11	0.595129	3.095795	chr22	30611097	30611237	SINE|MIR|MIR3	+	chr22	30607203	30627060	TCN2|ENST00000407817.3	+	30607203,30610870,30612872,30614348,30615300,30615600,30617329,30622967,30626459	30607395,30611063,30612961,30614501,30615473,30615787,30617495,30623083,30627060	0.909091
esophagus_muscularis_mucosa_female_adult_53_years	chrX	155612335	155612342	155612335	+	High_confidence	6	6	11	0.595129	3.121928	chrX	155612307	155612443	SINE|MIR|MIR3	-	chrX	155612564	155782459	SPRY3|NM_001304990.1	+	155612564,155767961,155773765	155612647,155768136,155782459	0.545455
esophagus_muscularis_mucosa_female_adult_53_years	chr3	48748169	48748194	48748169	-	RAMPAGE_only	5	5	17	0.919744	2.655639	chr3	48748128	48748433	SINE|Alu|AluJo	-	chr3	48747514	48847804	PRKAR2A|ENST00000454963.5	-	48747514,48751584,48752175,48756378,48765003,48765247,48772954,48782985,48790543,48793996,48807648,48847334	48747940,48751718,48752317,48756444,48765078,48765349,48773108,48783092,48790627,48794049,48807684,48847804	0.823529
esophagus_muscularis_mucosa_female_adult_53_years	chr12	65464735	65464895	65464814	+	RAMPAGE_only	7	7	63	3.408464	5.326176	chr12	65464864	65464960	SINE|MIR|MIRc	+	chr12	65279484	65466868	MSRB3|ENST00000642404.1	+	65279484,65306862,65308528,65326825,65328525,65368997,65453727,65463154	65279517,65307026,65308655,65326934,65328603,65369026,65453825,65466868	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	43277317	43277318	43277317	-	High_confidence	8	9	11	0.595129	2.721928	chr2	43277189	43277438	LINE|L2|L2	+	chr2	43231206	43277301	THADA|ENST00000467668.1	-	43231206,43232712,43277226	43231343,43232882,43277301	0.636364
esophagus_muscularis_mucosa_female_adult_53_years	chr4	118769843	118769889	118769873	-	High_confidence	4	4	16	0.865642	3.155639	chr4	118769853	118769919	SINE|MIR|MIRb	+	chr4	118723023	118769840	SEC24D|ENST00000511481.5	-	118723023,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118769763	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118769840	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr10	72355126	72355146	72355145	-	High_confidence	4	5	11	0.595129	2.550341	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr19	35115816	35115845	35115822	+	High_confidence	11	12	30	1.623078	4.208966	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.900000
esophagus_muscularis_mucosa_female_adult_53_years	chr10	28335269	28335306	28335295	-	High_confidence	13	14	37	2.001796	3.489217	chr10	28335237	28335330	SINE|Alu|AluYc	-	chr10	28334869	28335297	STRG.45803.1	-	28334869	28335297	0.891892
esophagus_muscularis_mucosa_female_adult_53_years	chr1	15785385	15785426	15785393	+	RAMPAGE_only	3	3	13	0.703334	2.507380	chr1	15785352	15785645	SINE|Alu|AluSz6	+	chr1	15764963	15786589	FBLIM1|NM_001024216.1	+	15764963,15770408,15774617,15777169,15784547	15765233,15770578,15774796,15777287,15786589	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr5	55982777	55982810	55982777	-	High_confidence	8	8	40	2.164104	4.047085	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr1	89272859	89272883	89272882	-	High_confidence	7	7	23	1.244360	3.844882	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.956522
esophagus_muscularis_mucosa_female_adult_53_years	chr16	30445873	30445877	30445873	-	High_confidence	47	67	105	5.680773	5.885245	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.980952
esophagus_muscularis_mucosa_female_adult_53_years	chr4	87524560	87524573	87524572	-	RAMPAGE_only	15	17	42	2.272309	4.802555	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87494416	87528619	SPARCL1|ENST00000535835.5	-	87494416,87494980,87499520,87504821,87528554	87494598,87495127,87499585,87504923,87528619	0.500000
esophagus_muscularis_mucosa_female_adult_53_years	chr19	12800915	12800976	12800953	-	High_confidence	7	7	36	1.947694	3.667533	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.972222
esophagus_muscularis_mucosa_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	79	79	79	4.274106	3.468471	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.987342
esophagus_muscularis_mucosa_female_adult_53_years	chr2	29538189	29538190	29538189	+	RAMPAGE_only	6	7	7	0.378718	2.521641	chr2	29538208	29538633	LTR|ERVL-MaLR|MSTB	+	chr2	30231368	30260028	LBH|ENST00000395323.8	+	30231368,30234404,30257432	30231764,30234507,30260028	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr7	134711498	134711504	134711503	+	RAMPAGE_only	10	10	22	1.190257	4.021928	chr7	134711275	134711628	LTR|ERVL|MLT2D	+	chr7	134744251	134968402	CALD1|ENST00000417172.5	+	134744251,134843883,134867692,134928753,134932987,134941091,134947507,134950373,134958068,134958208,134959973,134960532,134965305,134968339	134744363,134843971,134867804,134928900,134933390,134941237,134947769,134950514,134958112,134958290,134960111,134960628,134965386,134968402	0.863636
esophagus_muscularis_mucosa_female_adult_53_years	chr9	76613428	76613611	76613432	-	RAMPAGE_only	12	15	92	4.977439	5.342810	chr9	76613273	76613560	DNA|hAT-Charlie|MER58B	-	chr9	76611375	76692193	PRUNE2|ENST00000376717.6	-	76611375,76619339,76624451,76629191,76636470,76637417,76638185,76644738,76652482,76655422,76692073	76614600,76619387,76624490,76629290,76636557,76637549,76638288,76644912,76652683,76655502,76692193	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr12	7502503	7502547	7502503	-	High_confidence	9	10	32	1.731283	4.288910	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr19	41447813	41447821	41447813	-	High_confidence	3	4	7	0.378718	2.584963	chr19	41447559	41447855	SINE|Alu|AluSp	+	chr19	41447243	41447454	STRG.72849.1	-	41447243	41447454	0.571429
esophagus_muscularis_mucosa_female_adult_53_years	chr11	117836274	117836298	117836297	+	High_confidence	4	4	9	0.486923	3.169925	chr11	117836254	117836523	SINE|Alu|AluJb	-	chr11	117836295	117838331	STRG.51791.1	+	117836295,117837167	117836502,117838331	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr8	143558019	143558020	143558019	+	High_confidence	11	11	11	0.595129	3.277613	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143558017	143563027	STRG.41468.3	+	143558017,143558377,143559331,143559776,143560602,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143561104,143561423,143561828,143562131,143562350,143562521,143563027	0.818182
esophagus_muscularis_mucosa_female_adult_53_years	chr12	110440319	110440374	110440319	-	RAMPAGE_only	2	3	18	0.973847	4.087463	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.888889
esophagus_muscularis_mucosa_female_adult_53_years	chr1	39310262	39310323	39310294	+	RAMPAGE_only	5	6	30	1.623078	3.989898	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr20	44138397	44138432	44138408	+	High_confidence	6	6	23	1.244360	4.142915	chr20	44138382	44138683	SINE|Alu|AluJb	-	chr20	44137729	44146401	STRG.75096.1	+	44137729,44141204,44144172	44138524,44141323,44146401	0.956522
esophagus_muscularis_mucosa_female_adult_53_years	chr2	218287266	218287283	218287279	-	High_confidence	94	94	196	10.604110	5.976053	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.770408
esophagus_muscularis_mucosa_female_adult_53_years	chr5	139364676	139364712	139364691	+	RAMPAGE_only	2	3	12	0.649231	3.277613	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.833333
esophagus_muscularis_mucosa_female_adult_53_years	chr6	26474340	26474346	26474340	+	RAMPAGE_only	7	13	22	1.190257	3.508695	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.863636
esophagus_muscularis_mucosa_female_adult_53_years	chr18	34709337	34709374	34709342	+	High_confidence	6	6	26	1.406668	4.546594	chr18	34709150	34709395	LINE|L2|L2c	-	chr18	34709355	34812056	DTNA|ENST00000585446.1	+	34709355,34794036,34806218,34811958	34709517,34794250,34806304,34812056	0.538462
esophagus_muscularis_mucosa_female_adult_53_years	chr8	39083050	39083066	39083065	+	RAMPAGE_only	5	5	10	0.541026	2.846439	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.600000
esophagus_muscularis_mucosa_female_adult_53_years	chr9	111284841	111284842	111284841	-	High_confidence	6	6	6	0.324616	2.584963	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.833333
esophagus_muscularis_mucosa_female_adult_53_years	chr15	89041221	89041228	89041227	+	RAMPAGE_only	9	10	15	0.811539	3.006239	chr15	89040910	89041343	LTR|ERVL-MaLR|MLT1H2	+	chr15	89079355	89079717	STRG.63479.1	+	89079355	89079717	0.666667
esophagus_muscularis_mucosa_female_adult_53_years	chr1	12409844	12409855	12409848	+	RAMPAGE_only	9	10	33	1.785386	4.476410	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.969697
esophagus_muscularis_mucosa_female_adult_53_years	chr20	44532569	44532609	44532569	+	High_confidence	61	64	102	5.518466	5.709300	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.941176
esophagus_muscularis_mucosa_female_adult_53_years	chr17	43508426	43508449	43508427	+	RAMPAGE_only	3	5	10	0.541026	2.721928	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr12	91179456	91179463	91179462	-	High_confidence	17348	17866	26030	1408.290759	7.707960	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.897388
esophagus_muscularis_mucosa_female_adult_53_years	chr5	40981698	40981993	40981796	+	RAMPAGE_only	14	15	248	13.417446	5.555337	chr5	40981792	40981922	SINE|MIR|MIR3	+	chr5	40909496	40982939	C7|NM_000587.2	+	40909496,40928579,40931063,40934324,40936337,40937551,40945197,40947601,40949903,40955386,40958032,40959448,40962084,40964740,40972402,40976749,40979724,40981391	40909616,40928635,40931139,40934466,40936485,40937690,40945368,40947845,40950014,40955553,40958261,40959620,40962172,40964873,40972594,40976840,40979909,40982939	0.987903
esophagus_muscularis_mucosa_female_adult_53_years	chr2	227164620	227164621	227164620	+	High_confidence	9	9	12	0.649231	3.418296	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.916667
esophagus_muscularis_mucosa_female_adult_53_years	chr16	9108737	9108829	9108737	+	RAMPAGE_only	11	11	30	1.623078	3.469577	chr16	9108771	9108857	SINE|MIR|MIRb	+	chr16	9104847	9113181	AC087190.3|ENST00000574616.2	+	9104847	9113181	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr20	3795750	3795789	3795750	+	High_confidence	17	18	106	5.734876	5.623594	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.990566
esophagus_muscularis_mucosa_female_adult_53_years	chr12	643627	643636	643635	-	High_confidence	38	38	105	5.680773	4.846809	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.961905
esophagus_muscularis_mucosa_female_adult_53_years	chr19	3047811	3047812	3047811	-	High_confidence	7	7	8	0.432821	2.521641	chr19	3047758	3047946	LINE|L2|L2a	+	chr19	2997637	3047635	TLE2|NM_001144761.1	-	2997637,3002352,3005436,3005720,3006419,3008868,3009541,3011021,3013668,3014569,3015652,3017839,3019282,3019698,3025019,3027828,3028318,3028705,3045725,3047562	2997955,3002503,3005584,3005968,3006669,3008945,3009702,3011160,3013818,3014614,3015760,3017859,3019466,3019773,3025082,3027873,3028382,3028803,3045799,3047635	0.625000
esophagus_muscularis_mucosa_female_adult_53_years	chr15	25346017	25346024	25346023	-	High_confidence	6	6	15	0.811539	3.324863	chr15	25345979	25347018	LINE|L1|L1ME2	+	chr15	25333727	25346031	UBE3A|ENST00000636667.1	-	25333727,25340084,25345979	25339257,25340228,25346031	0.933333
esophagus_muscularis_mucosa_female_adult_53_years	chr18	36807868	36807870	36807869	-	High_confidence	4	6	8	0.432821	2.500000	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.750000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	219425186	219425187	219425186	+	RAMPAGE_only	16	16	16	0.865642	3.030639	chr2	219424901	219425196	SINE|Alu|AluSg	-	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr3	37058883	37058887	37058883	-	RAMPAGE_only	4	4	11	0.595129	2.521928	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.909091
esophagus_muscularis_mucosa_female_adult_53_years	chr7	55207536	55207558	55207557	+	RAMPAGE_only	4	4	13	0.703334	3.251629	chr7	55207372	55207669	LINE|L2|L2c	-	chr7	55019100	55211628	EGFR|ENST00000275493.6	+	55019100,55142285,55143304,55146605,55151293,55152545,55154010,55155829,55156532,55156758,55157662,55160138,55161498,55163732,55165279,55171174,55172982,55173920,55174721,55181292,55191718,55192765,55198716,55200315,55201187,55201734,55202516,55205255	55019365,55142437,55143488,55146740,55151362,55152664,55154152,55155946,55156659,55156832,55157753,55160338,55161631,55163823,55165437,55171213,55173124,55174043,55174820,55181478,55191874,55192841,55198863,55200413,55201355,55201782,55202625,55211628	0.923077
esophagus_muscularis_mucosa_female_adult_53_years	chr9	20658585	20658608	20658585	+	High_confidence	3	5	13	0.703334	2.918296	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658357	20865967	STRG.42180.4	+	20658357,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865967	0.538462
esophagus_muscularis_mucosa_female_adult_53_years	chrX	103536115	103536116	103536115	-	RAMPAGE_only	9	9	14	0.757436	3.235926	chrX	103535966	103536120	SINE|MIR|MIRb	+	chrX	103496487	103531019	STRG.80393.1	-	103496487,103523974,103526127,103526658,103530247,103530747	103500826,103524108,103526230,103526752,103530355,103531019	0.714286
esophagus_muscularis_mucosa_female_adult_53_years	chr17	4143196	4143215	4143199	+	High_confidence	85	91	239	12.930522	5.548513	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.974895
esophagus_muscularis_mucosa_female_adult_53_years	chr10	32954322	32954339	32954338	-	RAMPAGE_only	6	6	10	0.541026	2.725481	chr10	32953969	32954360	LINE|L2|L2	+	chr10	32928149	32955663	ITGB1|ENST00000480226.5	-	32928149,32929821,32932514,32935491,32955569	32928264,32930044,32932600,32935558,32955663	0.900000
esophagus_muscularis_mucosa_female_adult_53_years	chrX	48683361	48683363	48683362	+	High_confidence	18	36	36	1.947694	3.894476	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr19	35899244	35899259	35899251	+	RAMPAGE_only	4	4	9	0.486923	2.500000	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35902479	35904271	HCST|NM_014266.3	+	35902479,35903350,35903771,35904119	35902636,35903416,35903903,35904271	0.888889
esophagus_muscularis_mucosa_female_adult_53_years	chr1	21833827	21833833	21833827	-	High_confidence	4	4	9	0.486923	2.500000	chr1	21833729	21833783	LINE|L2|L2c	-	chr1	21829992	21833577	HSPG2|ENST00000635682.1	-	21829992,21830981,21831214,21831462,21831651,21832494,21832874,21833267,21833466	21830091,21831090,21831324,21831562,21831796,21832606,21832892,21833384,21833577	0.888889
esophagus_muscularis_mucosa_female_adult_53_years	chr10	52282179	52282240	52282179	+	RAMPAGE_only	3	3	15	0.811539	3.506891	chr10	52282132	52282197	LINE|CR1|L3	+	chr10	52046866	52294176	PRKG1|ENST00000373975.3	+	52046866,52054483,52062536,52081596,52133839,52161888,52251569,52271349,52272391,52280788,52282152,52288725,52288930,52290223,52293801	52046926,52054561,52062631,52081657,52133905,52161963,52251666,52271489,52272481,52280930,52282316,52288848,52288993,52290290,52294176	0.933333
esophagus_muscularis_mucosa_female_adult_53_years	chr15	80059918	80059933	80059918	+	High_confidence	292	338	682	36.897975	5.744888	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059920	80131419	STRG.63169.10	+	80059920,80098415,80120327,80121711,80122699,80131179	80059963,80098578,80120498,80121820,80122800,80131419	0.951613
esophagus_muscularis_mucosa_female_adult_53_years	chr10	65570521	65570544	65570521	+	High_confidence	3	3	8	0.432821	2.750000	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.750000
esophagus_muscularis_mucosa_female_adult_53_years	chr12	95380505	95380506	95380505	+	High_confidence	154	155	155	8.385903	4.795231	chr12	95379425	95380921	LTR|ERV1|LTR12C	+	chr12	95380800	95381561	STRG.55309.1	+	95380800	95381561	0.541935
esophagus_muscularis_mucosa_female_adult_53_years	chr14	50756903	50756920	50756903	-	RAMPAGE_only	2	2	7	0.378718	2.584963	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.857143
esophagus_muscularis_mucosa_female_adult_53_years	chr1	179856122	179856148	179856147	-	RAMPAGE_only	4	5	12	0.649231	2.732159	chr1	179855896	179856189	SINE|Alu|AluSz	+	chr1	179839966	179877772	STRG.5791.2	-	179839966,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877772	0.916667
esophagus_muscularis_mucosa_female_adult_53_years	chr4	78971815	78971826	78971825	+	High_confidence	7	7	18	0.973847	3.614369	chr4	78971775	78972175	LINE|L1|L1MA7	-	chr4	78971747	79308799	LINC01088|NR_038342.1	+	78971747,78972999,79086095,79195835,79306690,79308272	78971876,78973052,79086262,79195932,79306728,79308799	0.500000
esophagus_muscularis_mucosa_female_adult_53_years	chr7	107580245	107580267	107580245	+	High_confidence	1204	1213	6040	326.779723	7.007809	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.944040
esophagus_muscularis_mucosa_female_adult_53_years	chr15	92914950	92914974	92914950	+	High_confidence	4	4	12	0.649231	3.095795	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.833333
esophagus_muscularis_mucosa_female_adult_53_years	chr4	11336762	11336783	11336775	+	RAMPAGE_only	46	51	137	7.412057	4.879035	chr4	11336585	11336947	LTR|ERVL-MaLR|MLT1O	+	chr4	11347193	11350022	STRG.20100.1	+	11347193	11350022	0.620438
esophagus_muscularis_mucosa_female_adult_53_years	chr4	48012914	48012945	48012944	-	High_confidence	7	8	24	1.298462	3.882045	chr4	48012591	48013262	LTR|ERV1|MER4-int	-	chr4	47935976	48012944	CNGA1|NM_000087.3	-	47935976,47940762,47942040,47943180,47943370,47949832,47951352,47952582,47981392,48010793,48012888	47937829,47940869,47942148,47943288,47943412,47949895,47951469,47952703,47981500,48010893,48012944	0.916667
esophagus_muscularis_mucosa_female_adult_53_years	chr2	48479478	48479482	48479478	+	High_confidence	5	5	9	0.486923	2.725481	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48479355	48515385	STRG.8948.6	+	48479355,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515385	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr14	77736978	77736988	77736978	-	High_confidence	2	3	6	0.324616	2.584963	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.833333
esophagus_muscularis_mucosa_female_adult_53_years	chr2	217937115	217937162	217937115	-	High_confidence	15	15	34	1.839489	4.395999	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.617647
esophagus_muscularis_mucosa_female_adult_53_years	chr3	33838256	33838262	33838256	+	RAMPAGE_only	8	8	14	0.757436	3.182006	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.928571
esophagus_muscularis_mucosa_female_adult_53_years	chr5	154038408	154038409	154038408	-	High_confidence	16	16	20	1.082052	3.536887	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	153991702	154038866	FAM114A2|ENST00000522858.5	-	153991702,153994918,153997802,154002250,154002846,154011240,154026398,154027175,154028148,154029488,154033790,154034277,154034743,154038292	153993110,153994972,153997875,154002390,154002969,154011320,154026522,154027334,154028283,154029580,154033883,154034377,154034967,154038866	0.950000
esophagus_muscularis_mucosa_female_adult_53_years	chrX	103577211	103577212	103577211	+	High_confidence	20	28	28	1.514873	4.351823	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr16	88268233	88268255	88268249	-	High_confidence	4	5	17	0.919744	3.327820	chr16	88267831	88268750	LINE|L1|L1MD3	-	chr16	88267595	88268242	STRG.66092.1	-	88267595	88268242	0.647059
esophagus_muscularis_mucosa_female_adult_53_years	chr4	185643310	185643346	185643310	-	RAMPAGE_only	3	5	13	0.703334	3.084963	chr4	185643014	185643625	LINE|L2|L2b	-	chr4	185639961	185656680	STRG.24092.19	-	185639961,185646667,185649466,185651783,185652661,185656614	185646071,185646782,185649656,185651828,185652728,185656680	0.923077
esophagus_muscularis_mucosa_female_adult_53_years	chrX	11351675	11351698	11351675	-	RAMPAGE_only	31	31	48	2.596925	5.171610	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.625000
esophagus_muscularis_mucosa_female_adult_53_years	chr16	27333283	27333284	27333283	+	RAMPAGE_only	9	10	13	0.703334	3.251629	chr16	27333168	27333399	LINE|CR1|L3	-	chr16	27340203	27355876	STRG.64755.4	+	27340203,27342120,27344868,27346466,27352539,27355807	27340273,27342259,27345020,27346618,27352696,27355876	0.538462
esophagus_muscularis_mucosa_female_adult_53_years	chr1	147172975	147172993	147172975	+	High_confidence	11	11	21	1.136155	4.201841	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr9	72363478	72363559	72363523	-	High_confidence	3	3	25	1.352565	4.163856	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.880000
esophagus_muscularis_mucosa_female_adult_53_years	chr8	2726958	2726963	2726962	+	High_confidence	7	7	17	0.919744	3.734522	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.764706
esophagus_muscularis_mucosa_female_adult_53_years	chr11	58578102	58578133	58578130	-	High_confidence	12	21	56	3.029746	5.056372	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.839286
esophagus_muscularis_mucosa_female_adult_53_years	chr11	57568212	57568213	57568212	-	High_confidence	6	6	8	0.432821	2.500000	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr3	28347646	28347654	28347653	-	High_confidence	6	6	11	0.595129	2.721928	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.818182
esophagus_muscularis_mucosa_female_adult_53_years	chr9	110170542	110170861	110170695	+	RAMPAGE_only	23	28	178	9.630263	6.228939	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr7	101217578	101217599	101217594	-	High_confidence	11	11	41	2.218207	4.763295	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr10	102449836	102449845	102449844	+	High_confidence	7	9	24	1.298462	4.175736	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449852	102456293	RPARP-AS1|ENST00000492465.2	+	102449852,102450186,102451398,102452089,102455336	102450022,102450360,102451555,102452187,102456293	0.875000
esophagus_muscularis_mucosa_female_adult_53_years	chr6	48111154	48111181	48111177	-	RAMPAGE_only	21	21	65	3.516669	5.352987	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47878027	48068689	PTCHD4|NM_001013732.3	-	47878027,48008633,48068229	47879936,48009114,48068689	0.523077
esophagus_muscularis_mucosa_female_adult_53_years	chr19	41545191	41545192	41545191	+	High_confidence	12	12	12	0.649231	2.751629	chr19	41544577	41545607	LTR|ERVK|LTR5A	+	chr19	41545191	41555251	AC243960.1|ENST00000595649.5	+	41545191,41549519,41551179,41551752,41553705,41554950,41555209	41545196,41549552,41551494,41551828,41553746,41555099,41555251	0.666667
esophagus_muscularis_mucosa_female_adult_53_years	chr10	88953815	88953816	88953815	+	RAMPAGE_only	9	9	9	0.486923	2.503258	chr10	88953621	88953984	LTR|ERVL-MaLR|THE1D	+	chr10	88990558	89017061	FAS|NM_000043.5	+	88990558,89003028,89007699,89008888,89010538,89010752,89011998,89013342,89014118	88990906,89003194,89007837,89008997,89010600,89010815,89012081,89013367,89017061	0.777778
esophagus_muscularis_mucosa_female_adult_53_years	chr2	3536827	3536867	3536827	-	High_confidence	3	3	25	1.352565	4.053509	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.600000
esophagus_muscularis_mucosa_female_adult_53_years	chr14	73567616	73567641	73567616	+	High_confidence	102	112	275	14.878216	5.928718	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.967273
esophagus_muscularis_mucosa_female_adult_53_years	chr14	77076158	77076194	77076193	-	High_confidence	15	16	60	3.246156	5.198245	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77074303	77076186	STRG.60090.2	-	77074303,77076104	77074598,77076186	0.550000
esophagus_muscularis_mucosa_female_adult_53_years	chr15	99098325	99098363	99098330	+	High_confidence	4	5	15	0.811539	3.373557	chr15	99098258	99098383	SINE|MIR|MIRb	-	chr15	99098216	99135593	SYNM|ENST00000560674.5	+	99098216,99113590,99126721,99129366,99132749	99098637,99113715,99126792,99131813,99135593	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	15	16	16	0.865642	3.452820	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888512	77933384	NEXN|ENST00000401035.7	+	77888512,77916054,77917959,77918124,77925187,77926413,77926715,77929315,77933281	77888759,77916133,77918038,77918273,77925229,77926611,77926892,77929504,77933384	0.937500
esophagus_muscularis_mucosa_female_adult_53_years	chr15	97875619	97875644	97875619	-	High_confidence	3	4	9	0.486923	2.500000	chr15	97875560	97876737	LTR|ERV1|LTR12D	+	chr15	97874856	97875312	STRG.63741.1	-	97874856	97875312	0.555556
esophagus_muscularis_mucosa_female_adult_53_years	chr13	110057302	110057310	110057309	-	High_confidence	12	14	19	1.027949	2.969389	chr13	110056667	110057319	LTR|ERV1|LTR58	+	chr13	110036196	110057286	AL355974.2|ENST00000617298.1	-	110036196,110057125	110036971,110057286	0.736842
esophagus_muscularis_mucosa_female_adult_53_years	chr1	100268205	100268281	100268280	+	RAMPAGE_only	6	6	40	2.164104	3.301195	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.975000
esophagus_muscularis_mucosa_female_adult_53_years	chr11	12528388	12528408	12528406	+	RAMPAGE_only	7	11	21	1.136155	3.471354	chr11	12528254	12528421	SINE|MIR|MIRb	-	chr11	12377478	12535356	PARVA|ENST00000649199.1	+	12377478,12473744,12473912,12477846,12496457,12504313,12508583,12511513,12513298,12513996,12517609,12518444,12527848	12377783,12473834,12473983,12477949,12496598,12504429,12508642,12511533,12513360,12514065,12517711,12518517,12535356	0.904762
esophagus_muscularis_mucosa_female_adult_53_years	chr21	28048446	28048447	28048446	+	High_confidence	132	135	148	8.007185	4.203753	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.959459
esophagus_muscularis_mucosa_female_adult_53_years	chr2	86556635	86556669	86556668	-	RAMPAGE_only	7	7	15	0.811539	3.378783	chr2	86556435	86556899	LTR|ERVK|LTR22C0	+	chr2	86505774	86563166	CHMP3|ENST00000393773.7	-	86505774,86507478,86510357,86529217,86542251,86563092	86505949,86507593,86510479,86529397,86542312,86563166	0.866667
esophagus_muscularis_mucosa_female_adult_53_years	chr14	44912600	44912682	44912628	-	High_confidence	26	27	72	3.895387	4.490040	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44895328	44912830	STRG.59054.1	-	44895328,44899229,44911756,44912452	44895555,44899313,44911860,44912830	0.680556
esophagus_muscularis_mucosa_female_adult_53_years	chr2	10844420	10844421	10844420	+	High_confidence	13	13	14	0.757436	2.777363	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844255	10885118	STRG.7788.3	+	10844255,10884833	10844505,10885118	0.642857
esophagus_muscularis_mucosa_female_adult_53_years	chr16	8842153	8842179	8842153	+	High_confidence	38	38	82	4.436413	5.355299	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.890244
esophagus_muscularis_mucosa_female_adult_53_years	chr11	70077956	70077961	70077960	+	High_confidence	5	6	11	0.595129	2.646439	chr11	70077921	70078008	LINE|L2|L2c	-	chr11	70078301	70189545	ANO1|NM_018043.5	+	70078301,70087751,70103065,70103998,70105733,70108352,70111706,70116457,70124349,70126060,70131918,70149709,70152449,70153056,70155910,70156946,70161160,70161621,70163282,70165469,70167241,70170886,70180003,70182501,70185589,70187737	70078714,70088084,70103164,70104150,70105788,70108404,70111762,70116499,70124414,70126195,70132079,70149792,70152461,70153128,70155988,70157021,70161362,70161733,70163340,70165570,70167387,70171039,70180056,70182686,70185695,70189545	0.818182
esophagus_muscularis_mucosa_female_adult_53_years	chr12	15001810	15001826	15001810	+	High_confidence	7	7	22	1.190257	3.272804	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.909091
esophagus_muscularis_mucosa_female_adult_53_years	chr9	18702070	18702071	18702070	-	High_confidence	12	14	15	0.811539	3.235926	chr9	18701896	18702263	LTR|ERVL-MaLR|THE1B	-	chr9	18657182	18702056	STRG.42126.1	-	18657182,18670172,18694347,18701979	18657739,18670287,18694419,18702056	0.666667
esophagus_muscularis_mucosa_female_adult_53_years	chr1	51403418	51403430	51403428	-	RAMPAGE_only	7	12	19	1.027949	3.471354	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr9	111284874	111284875	111284874	-	High_confidence	47	48	55	2.975643	4.479595	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.890909
esophagus_muscularis_mucosa_female_adult_53_years	chr2	48479384	48479385	48479384	+	High_confidence	73	75	83	4.490516	5.674735	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48479355	48515385	STRG.8948.6	+	48479355,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515385	0.867470
esophagus_muscularis_mucosa_female_adult_53_years	chr22	39021141	39021156	39021155	+	High_confidence	4	4	14	0.757436	3.039149	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr19	20423688	20423704	20423703	-	RAMPAGE_only	5	6	18	0.973847	3.419382	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.888889
esophagus_muscularis_mucosa_female_adult_53_years	chr16	15838799	15838821	15838799	-	RAMPAGE_only	4	5	15	0.811539	3.773557	chr16	15838577	15838884	SINE|Alu|AluSz	+	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr13	76335577	76335594	76335593	-	High_confidence	7	8	21	1.136155	4.142664	chr13	76335445	76335909	LINE|RTE-X|L4_C_Mam	+	chr13	76327963	76335591	STRG.57548.1	-	76327963,76335519	76328696,76335591	0.714286
esophagus_muscularis_mucosa_female_adult_53_years	chr20	36891797	36891839	36891833	-	RAMPAGE_only	5	5	20	1.082052	3.576618	chr20	36891694	36891859	SINE|Alu|AluSx3	-	chr20	36890418	36893066	SAMHD1|ENST00000644250.1	-	36890418,36892618	36891794,36893066	0.950000
esophagus_muscularis_mucosa_female_adult_53_years	chr5	149509878	149509932	149509878	-	RAMPAGE_only	9	9	66	3.570772	4.536819	chr5	149509722	149509839	SINE|Alu|AluJb	-	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.939394
esophagus_muscularis_mucosa_female_adult_53_years	chr22	43301445	43301494	43301462	-	RAMPAGE_only	3	3	13	0.703334	3.251629	chr22	43300768	43301818	LINE|L2|L2a	+	chr22	43231755	43262799	SCUBE1|ENST00000449304.5	-	43231755,43238837,43255487,43258218,43262719	43231875,43238954,43255577,43258335,43262799	0.769231
esophagus_muscularis_mucosa_female_adult_53_years	chr4	79492595	79492601	79492595	+	High_confidence	5	5	12	0.649231	2.845351	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.750000
esophagus_muscularis_mucosa_female_adult_53_years	chr5	151687233	151687245	151687244	-	High_confidence	12	14	33	1.785386	4.210765	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.969697
esophagus_muscularis_mucosa_female_adult_53_years	chrX	81262650	81262673	81262650	+	RAMPAGE_only	12	12	31	1.677181	4.066784	chrX	81262192	81262806	LINE|L1|L1MD3	+	chrX	81255493	81297516	SH3BGRL|ENST00000474113.1	+	81255493,81276983,81278330,81297194	81255643,81277169,81278411,81297516	0.903226
esophagus_muscularis_mucosa_female_adult_53_years	chrX	16712879	16712890	16712889	-	High_confidence	17	17	34	1.839489	4.375000	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.941176
esophagus_muscularis_mucosa_female_adult_53_years	chrX	124243024	124243030	124243024	+	RAMPAGE_only	7	7	20	1.082052	3.747413	chrX	124242976	124243273	SINE|Alu|AluSz6	-	chrX	124227867	124373197	SH2D1A|ENST00000635645.1	+	124227867,124234572,124246241,124365760,124370175,124371350	124228170,124234671,124246337,124365824,124370320,124373197	0.700000
esophagus_muscularis_mucosa_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	78	79	82	4.436413	4.290670	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.914634
esophagus_muscularis_mucosa_female_adult_53_years	chr2	177499710	177499720	177499719	+	RAMPAGE_only	4	4	10	0.541026	2.503258	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177392767	177538418	AGPS|ENST00000409888.1	+	177392767,177420268,177521328,177523747,177538073	177393049,177420358,177521368,177523805,177538418	0.900000
esophagus_muscularis_mucosa_female_adult_53_years	chr1	242001524	242001525	242001524	-	High_confidence	8	9	12	0.649231	2.913977	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	242001579	STRG.7382.1	-	241995489,241998513,241998775,241998950,242001308	241996385,241998620,241998831,241999026,242001579	0.916667
esophagus_muscularis_mucosa_female_adult_53_years	chr3	146152393	146152414	146152393	-	RAMPAGE_only	7	8	13	0.703334	3.084963	chr3	146152136	146152431	SINE|Alu|AluSx	+	chr3	146110299	146160991	PLOD2|ENST00000480704.1	-	146110299,146121111,146123264,146124137,146160880	146110448,146121248,146123325,146124229,146160991	0.923077
esophagus_muscularis_mucosa_female_adult_53_years	chr14	106846262	106846266	106846262	-	High_confidence	5	5	13	0.703334	3.584963	chr14	106845982	106849095	LINE|L1|L1PBb	-	chr14	106810441	106846077	STRG.60799.2	-	106810441,106845802	106810746,106846077	0.538462
esophagus_muscularis_mucosa_female_adult_53_years	chr6	79631273	79631329	79631328	+	High_confidence	82	92	304	16.447191	6.471031	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.993421
esophagus_muscularis_mucosa_female_adult_53_years	chr4	152412488	152412529	152412528	-	High_confidence	7	9	18	0.973847	3.683542	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.888889
esophagus_muscularis_mucosa_female_adult_53_years	chr5	128082243	128082265	128082243	-	High_confidence	3	3	11	0.595129	3.121928	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127940425	128082960	STRG.26831.3	-	127940425,127956803,128061143,128081972,128082734	127941220,127956921,128061244,128082191,128082960	0.545455
esophagus_muscularis_mucosa_female_adult_53_years	chr1	159920334	159920339	159920334	-	RAMPAGE_only	3	3	8	0.432821	2.521641	chr1	159920065	159920288	LINE|CR1|L3b	-	chr1	159918106	159923717	TAGLN2|NM_001277224.1	-	159918106,159919273,159919660,159920329,159923435	159918941,159919376,159919835,159920537,159923717	0.875000
esophagus_muscularis_mucosa_female_adult_53_years	chr14	95516099	95516123	95516122	+	High_confidence	5	6	9	0.486923	2.725481	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr22	37855591	37855613	37855591	+	RAMPAGE_only	2	2	9	0.486923	3.000000	chr22	37855622	37855711	SINE|tRNA|LFSINE_Vert	+	chr22	37849480	37888630	EIF3L|ENST00000406934.5	+	37849480,37851279,37858678,37862968,37863271,37870175,37874369,37875840,37877673,37886764,37888425	37850063,37851490,37858740,37863038,37863345,37870347,37874524,37876011,37878171,37886845,37888630	0.888889
esophagus_muscularis_mucosa_female_adult_53_years	chr8	18851510	18851534	18851510	-	RAMPAGE_only	7	7	15	0.811539	2.842371	chr8	18851419	18851578	SINE|tRNA-Deu|AmnSINE2	-	chr8	18527302	18808895	PSD3|NM_206909.2	-	18527302,18556208,18572527,18575127,18600363,18632612,18655641,18765448,18799294,18801269,18804521,18804703,18808754	18535958,18556352,18572672,18575285,18600434,18632806,18655685,18765538,18799353,18801382,18804602,18804898,18808895	0.533333
esophagus_muscularis_mucosa_female_adult_53_years	chr3	49468637	49468649	49468648	+	High_confidence	8	10	19	1.027949	3.572431	chr3	49468531	49468836	SINE|Alu|AluSx1	-	chr3	49468702	49535618	DAG1|NM_001177643.2	+	49468702,49510418,49530796	49469055,49510819,49535618	0.894737
esophagus_muscularis_mucosa_female_adult_53_years	chr11	43881075	43881088	43881087	+	High_confidence	17	20	64	3.462567	4.927669	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.937500
esophagus_muscularis_mucosa_female_adult_53_years	chr1	33021378	33021398	33021378	-	RAMPAGE_only	1	1	7	0.378718	2.584963	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.857143
esophagus_muscularis_mucosa_female_adult_53_years	chr6	17856034	17856035	17856034	-	RAMPAGE_only	4	4	7	0.378718	2.584963	chr6	17855745	17856010	SINE|Alu|AluJo	-	chr6	17759182	17987463	KIF13A|ENST00000378814.9	-	17759182,17764154,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571,17796668,17799265,17799951,17804360,17805474,17808767,17817019,17825767,17826037,17828239,17831100,17833960,17836877,17837471,17849376,17850322,17851954,17855436,17856029,17873376,17898167,17987053,17987408	17760877,17764946,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794704,17796820,17799439,17800113,17804510,17805615,17808930,17817233,17825934,17826124,17828370,17831235,17834071,17837090,17837583,17849489,17850457,17852042,17855617,17856122,17873437,17898180,17987144,17987463	0.857143
esophagus_muscularis_mucosa_female_adult_53_years	chr17	15475727	15475733	15475732	-	High_confidence	10	10	18	0.973847	3.219528	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15437858	15475728	CDRT4|ENST00000520956.2	-	15437858,15475600	15438200,15475728	0.555556
esophagus_muscularis_mucosa_female_adult_53_years	chr8	144106393	144106423	144106393	+	RAMPAGE_only	3	3	9	0.486923	2.725481	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144104511	144107611	MAF1|ENST00000534585.5	+	144104511,144105639,144105868,144106075,144106342,144106834,144107087	144104858,144105766,144105997,144106241,144106674,144106963,144107611	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	10844332	10844374	10844369	+	High_confidence	10	10	49	2.651028	4.464941	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844255	10885118	STRG.7788.1	+	10844255,10878270,10884833	10844505,10878444,10885118	0.714286
esophagus_muscularis_mucosa_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	63	63	81	4.382311	5.353056	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158124603	158173037	STRG.23625.3	-	158124603,158130785,158155610,158170465,158172872	158127614,158131012,158155825,158171599,158173037	0.950617
esophagus_muscularis_mucosa_female_adult_53_years	chr3	135965670	135965749	135965748	+	High_confidence	48	49	400	21.641041	6.354539	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.985000
esophagus_muscularis_mucosa_female_adult_53_years	chr12	10710653	10710654	10710653	-	High_confidence	16	16	17	0.919744	3.875000	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.529412
esophagus_muscularis_mucosa_female_adult_53_years	chr2	86225588	86225594	86225588	-	RAMPAGE_only	4	4	8	0.432821	2.750000	chr2	86225275	86225570	SINE|Alu|AluSp	-	chr2	86214250	86223785	REEP1|ENST00000646181.1	-	86214250,86219969,86223488	86217110,86220140,86223785	0.500000
esophagus_muscularis_mucosa_female_adult_53_years	chr15	52548955	52548957	52548956	-	RAMPAGE_only	4	5	8	0.432821	2.521641	chr15	52548772	52548988	DNA|TcMar-Tigger|MamRep434	-	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	0.875000
esophagus_muscularis_mucosa_female_adult_53_years	chr11	34089397	34089440	34089439	+	High_confidence	7	7	25	1.352565	3.923856	chr11	34089484	34089623	SINE|Alu|AluJr	+	chr11	34090025	34101151	CAPRIN1|ENST00000533657.5	+	34090025,34090528,34091905,34096478,34097195,34097697,34099302	34090289,34090678,34092056,34096673,34097296,34097761,34101151	0.960000
esophagus_muscularis_mucosa_female_adult_53_years	chr4	54264969	54265030	54265029	+	RAMPAGE_only	5	5	33	1.785386	3.813207	chr4	54265070	54265216	SINE|MIR|MIR3	+	chr4	54229310	54281978	PDGFRA|ENST00000509490.5	+	54229310,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54278818,54280315,54281580	54229415,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54278971,54280482,54281978	0.969697
esophagus_muscularis_mucosa_female_adult_53_years	chr22	49657355	49657371	49657355	-	High_confidence	6	6	12	0.649231	3.022055	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49656061	49657376	STRG.78359.1	-	49656061	49657376	0.750000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	37147695	37147728	37147695	-	High_confidence	3	4	10	0.541026	2.947703	chr2	37147318	37147662	LINE|L1|L1PA4	-	chr2	37107272	37147806	EIF2AK2|ENST00000405334.5	-	37107272,37107473,37109193,37114730,37119958,37122505,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687	37107395,37107527,37109295,37114859,37120139,37122664,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147806	0.800000
esophagus_muscularis_mucosa_female_adult_53_years	chr1	184590777	184590802	184590801	+	RAMPAGE_only	5	9	22	1.190257	2.964976	chr1	184590844	184591183	DNA|TcMar-Tigger|MER2B	+	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.954545
esophagus_muscularis_mucosa_female_adult_53_years	chr16	2757853	2757891	2757883	+	High_confidence	5	5	22	1.190257	4.004886	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	173223945	173224062	173224061	+	RAMPAGE_only	5	5	46	2.488720	4.518833	chr2	173223967	173224276	LINE|L2|L2a	-	chr2	173075841	173227146	MAP3K20|ENST00000338983.7	+	173075841,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173221149	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173227146	0.934783
esophagus_muscularis_mucosa_female_adult_53_years	chr1	202582614	202582623	202582614	+	RAMPAGE_only	5	5	10	0.541026	2.846439	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	62724476	62724519	62724518	+	RAMPAGE_only	7	7	28	1.514873	4.208410	chr2	62722846	62724681	LINE|L1|L1PA13	-	chr2	62707191	63045500	EHBP1|ENST00000405289.5	+	62707191,62747394,62764265,62771338,62826086,62831018,62859168,62864730,62874345,62942717,62943801,62948259,62955516,62979187,62987930,62990715,62993529,62993870,62996642,63037534,63038742,63045065,63045409	62707295,62747452,62764361,62771392,62826268,62831158,62859291,62864971,62874532,62942896,62943850,62949162,62955660,62979335,62988038,62990840,62993668,62993977,62996766,63037634,63038816,63045180,63045500	0.892857
esophagus_muscularis_mucosa_female_adult_53_years	chr8	80485592	80485619	80485592	+	High_confidence	19	19	36	1.947694	4.440404	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.777778
esophagus_muscularis_mucosa_female_adult_53_years	chr1	238486008	238486038	238486008	-	High_confidence	4	4	12	0.649231	3.418296	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480383	238486017	LINC01139|NR_015407.1	-	238480383,238485784	238481681,238486017	0.916667
esophagus_muscularis_mucosa_female_adult_53_years	chr16	17383432	17383459	17383458	-	RAMPAGE_only	4	4	10	0.541026	2.725481	chr16	17383202	17383569	LINE|L2|L2b	+	chr16	17101768	17470881	XYLT1|ENST00000261381.6	-	17101768,17117645,17127665,17134472,17138354,17141152,17158828,17198211,17200481,17258987,17358011,17470433	17109017,17117979,17127861,17134735,17138531,17141369,17158909,17198414,17200654,17259498,17358050,17470881	0.600000
esophagus_muscularis_mucosa_female_adult_53_years	chr4	15337854	15337892	15337854	-	High_confidence	4	7	17	0.919744	3.405639	chr4	15337541	15337952	LTR|ERVL-MaLR|MLT1J1-int	-	chr4	15333384	15338316	STRG.20293.6	-	15333384	15338316	0.823529
esophagus_muscularis_mucosa_female_adult_53_years	chr12	123390734	123390749	123390734	+	High_confidence	3	3	13	0.703334	2.968919	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.923077
esophagus_muscularis_mucosa_female_adult_53_years	chr8	100663220	100663221	100663220	-	RAMPAGE_only	4	4	7	0.378718	2.584963	chr8	100662939	100663274	LINE|L1|L1PA17	+	chr8	100572881	100649665	SNX31|NM_152628.3	-	100572881,100577018,100584110,100588865,100596638,100600348,100608493,100611999,100612994,100617619,100630326,100635896,100649273,100649448	100573960,100577075,100584188,100588979,100596842,100600441,100608563,100612087,100613085,100617730,100630391,100636011,100649348,100649665	0.857143
esophagus_muscularis_mucosa_female_adult_53_years	chr2	217937254	217937255	217937254	-	High_confidence	14	18	19	1.027949	3.419382	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.894737
esophagus_muscularis_mucosa_female_adult_53_years	chr14	32402135	32402136	32402135	+	High_confidence	39	39	40	2.164104	4.045286	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32402139	32546449	STRG.58685.5	+	32402139,32433459,32535553,32545229	32402141,32433817,32535805,32546449	0.975000
esophagus_muscularis_mucosa_female_adult_53_years	chr17	77127872	77127877	77127872	+	High_confidence	15	15	27	1.460770	4.286790	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.518519
esophagus_muscularis_mucosa_female_adult_53_years	chr9	20658312	20658349	20658348	+	High_confidence	17	25	53	2.867438	4.011718	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658357	20865967	STRG.42180.4	+	20658357,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865967	0.603774
esophagus_muscularis_mucosa_female_adult_53_years	chr15	98016468	98016497	98016468	-	RAMPAGE_only	2	2	8	0.432821	2.521641	chr15	98016264	98017842	LINE|L2|L2a	+	chr15	97988560	97999118	STRG.63803.1	-	97988560,97991787	97991244,97999118	0.750000
esophagus_muscularis_mucosa_female_adult_53_years	chr4	5813676	5813697	5813696	+	RAMPAGE_only	3	3	9	0.486923	2.641604	chr4	5813642	5813697	LINE|CR1|L3	+	chr4	5793607	5830611	STRG.19973.4	+	5793607,5797021,5798585,5801949,5804729,5808200,5809517,5810338,5810955,5818210,5820401,5827381,5828518	5793717,5797232,5798792,5802094,5804841,5808327,5809611,5810450,5814162,5818254,5823820,5827565,5830611	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	48529373	48529386	48529375	+	High_confidence	28	37	63	3.408464	5.226464	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	0.746032
esophagus_muscularis_mucosa_female_adult_53_years	chr12	52056988	52057001	52057000	+	RAMPAGE_only	3	3	11	0.595129	2.646439	chr12	52056859	52057005	DNA|hAT-Tip100|MER91A	-	chr12	52053417	52059503	NR4A1|ENST00000550557.1	+	52053417,52057351,52058687	52057259,52057530,52059503	0.545455
esophagus_muscularis_mucosa_female_adult_53_years	chr10	124005443	124005446	124005445	+	High_confidence	23	44	50	2.705130	4.153270	chr10	124005360	124005827	LTR|ERVL-MaLR|MLT1D	+	chr10	124005455	124008471	STRG.48327.1	+	124005455,124007891	124005668,124008471	0.520000
esophagus_muscularis_mucosa_female_adult_53_years	chr16	15798662	15798683	15798664	-	RAMPAGE_only	179	255	593	32.082844	6.560057	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.954469
esophagus_muscularis_mucosa_female_adult_53_years	chr3	151539250	151539264	151539263	-	RAMPAGE_only	4	4	10	0.541026	2.646439	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.800000
esophagus_muscularis_mucosa_female_adult_53_years	chr7	40509494	40509498	40509494	+	High_confidence	97	97	215	11.632060	5.806191	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40509375	40860631	STRG.34990.4	+	40509375,40749433,40860315	40509545,40749497,40860631	0.865116
esophagus_muscularis_mucosa_female_adult_53_years	chr7	134432435	134432436	134432435	-	High_confidence	11	12	16	0.865642	3.139572	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.812500
esophagus_muscularis_mucosa_female_adult_53_years	chr5	150640314	150640352	150640344	+	High_confidence	3	3	18	0.973847	3.852169	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.944444
esophagus_muscularis_mucosa_female_adult_53_years	chr21	29077476	29077517	29077476	+	High_confidence	3	4	11	0.595129	2.846439	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077474	29091576	MAP3K7CL|ENST00000419845.5	+	29077474,29080551,29085812,29091500	29077713,29080708,29085917,29091576	0.818182
esophagus_muscularis_mucosa_female_adult_53_years	chr20	45833305	45833323	45833305	-	High_confidence	28	29	128	6.925133	4.688440	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833289	STRG.75174.1	-	45823213,45823990,45824291,45824494,45824782,45833250	45823379,45824127,45824406,45824638,45824834,45833289	0.968750
esophagus_muscularis_mucosa_female_adult_53_years	chr17	59499698	59499718	59499698	+	High_confidence	3	3	9	0.486923	2.947703	chr17	59499447	59500000	Retroposon|SVA|SVA_D	+	chr17	59499500	59500982	STRG.68560.1	+	59499500	59500982	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr1	1721607	1721637	1721636	-	High_confidence	4	6	11	0.595129	2.845351	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.727273
esophagus_muscularis_mucosa_female_adult_53_years	chr8	27977120	27977126	27977125	-	High_confidence	67	87	136	7.357954	5.642775	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977115	STRG.39124.3	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977115	0.919118
esophagus_muscularis_mucosa_female_adult_53_years	chr5	96934447	96934465	96934464	+	High_confidence	6	9	16	0.865642	3.750000	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr9	129489077	129489126	129489125	+	High_confidence	9	10	50	2.705130	4.908535	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.900000
esophagus_muscularis_mucosa_female_adult_53_years	chr2	241641020	241641044	241641020	+	RAMPAGE_only	5	5	21	1.136155	3.535175	chr2	241640468	241641268	LINE|L2|L2a	-	chr2	241637728	241659187	ATG4B|ENST00000430617.6	+	241637728,241651009,241651263,241653306,241653511,241654545,241655270,241659107	241637760,241651111,241651335,241653369,241653610,241654647,241655343,241659187	0.666667
esophagus_muscularis_mucosa_female_adult_53_years	chr19	48868595	48868631	48868595	-	High_confidence	297	306	1207	65.301842	7.437325	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.990886
esophagus_muscularis_mucosa_female_adult_53_years	chr1	153967486	153967512	153967497	+	High_confidence	5	5	23	1.244360	3.689704	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153974131	STRG.4720.1	+	153967533,153968007,153968521,153968929,153969333,153972743,153972971,153973194,153973379,153973619,153973871	153967884,153968164,153968699,153969176,153969455,153972836,153973078,153973263,153973464,153973716,153974131	0.869565
esophagus_muscularis_mucosa_female_adult_53_years	chr9	98943562	98943617	98943575	+	High_confidence	29	32	96	5.193850	5.856440	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.979167
esophagus_muscularis_mucosa_female_adult_53_years	chr2	201167223	201167280	201167279	+	RAMPAGE_only	3	3	15	0.811539	3.182006	chr2	201167231	201167526	SINE|Alu|AluJo	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	0.933333
esophagus_muscularis_mucosa_female_adult_53_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	20	21	21	1.136155	3.684184	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	0.952381
esophagus_muscularis_mucosa_female_adult_53_years	chr7	101241490	101241515	101241490	-	High_confidence	3	3	7	0.378718	2.521641	chr7	101241231	101241489	SINE|Alu|AluSq2	-	chr7	101239611	101241177	FIS1|ENST00000463406.5	-	101239611,101240141,101240829,101241125	101239903,101240247,101240906,101241177	0.571429
esophagus_muscularis_mucosa_female_adult_53_years	chr18	46087018	46087043	46087018	-	High_confidence	2	2	7	0.378718	2.807355	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.571429
esophagus_muscularis_mucosa_female_adult_53_years	chr14	99897271	99897284	99897283	+	High_confidence	5	8	14	0.757436	2.873141	chr14	99897314	99897417	SINE|Alu|FLAM_A	+	chr14	99897241	99910322	EML1|ENST00000554553.5	+	99897241,99898232,99900928,99907637,99909308,99910241	99897294,99898302,99901039,99907733,99909479,99910322	0.928571
esophagus_muscularis_mucosa_female_adult_53_years	chr1	212792469	212792473	212792469	-	High_confidence	3	3	6	0.324616	2.584963	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr15	65244454	65244457	65244454	-	RAMPAGE_only	7	7	12	0.649231	2.855389	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234497	65234824	STRG.62558.1	-	65234497	65234824	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr20	37298760	37298761	37298760	+	RAMPAGE_only	6	6	7	0.378718	2.584963	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.857143
esophagus_muscularis_mucosa_female_adult_53_years	chr5	180830987	180831032	180831009	+	High_confidence	17	18	127	6.871031	6.113421	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.905512
esophagus_muscularis_mucosa_female_adult_53_years	chr1	1655387	1655422	1655410	-	RAMPAGE_only	5	9	18	0.973847	3.572431	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	1.000000
esophagus_muscularis_mucosa_female_adult_53_years	chr19	33395154	33395188	33395187	-	High_confidence	4	4	15	0.811539	3.323231	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	0.800000
esophagus_muscularis_mucosa_female_adult_53_years	chr11	3380960	3380961	3380960	+	High_confidence	11	11	11	0.595129	3.095795	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.818182
esophagus_muscularis_mucosa_female_adult_53_years	chr2	159428358	159428373	159428358	-	RAMPAGE_only	3	5	9	0.486923	3.169925	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.666667
esophagus_muscularis_mucosa_female_adult_53_years	chr8	53523963	53523964	53523963	-	High_confidence	19	19	26	1.406668	4.243856	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.961538
esophagus_muscularis_mucosa_female_adult_53_years	chr9	121313981	121314023	121314002	+	RAMPAGE_only	83	84	353	19.098219	5.529778	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.994334
esophagus_muscularis_mucosa_female_adult_53_years	chr20	50131130	50131158	50131139	-	High_confidence	23	24	85	4.598721	5.563183	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.976471
esophagus_muscularis_mucosa_female_adult_53_years	chr1	42959478	42959486	42959478	+	High_confidence	5	5	9	0.486923	2.725481	chr1	42959490	42959595	LINE|L2|L2c	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.777778
esophagus_muscularis_mucosa_female_adult_53_years	chr12	56157308	56157349	56157341	+	High_confidence	7	7	36	1.947694	4.082735	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.861111
esophagus_muscularis_mucosa_female_adult_53_years	chr12	110000084	110000091	110000090	-	RAMPAGE_only	5	5	10	0.541026	2.646439	chr12	110000006	110000153	SINE|MIR|MIR	-	chr12	109929801	109996389	GIT2|NM_001135213.1	-	109929801,109934021,109938379,109939164,109947255,109953091,109959846,109961277,109961612,109965525,109967313,109967457,109980951,109983372,109983607,109988962,109989689,109991626,109996172	109933190,109934085,109938568,109939247,109947504,109953234,109959958,109961375,109961685,109965577,109967319,109967503,109981046,109983503,109983694,109989068,109989802,109991760,109996389	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr4	86453182	86453243	86453195	-	High_confidence	16	33	128	7.994261	5.090220	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016074	86453196	MAPK10|ENST00000641854.1	-	86016074,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86107352,86159467,86194407,86354644,86453196	0.960938
esophagus_muscularis_mucosa_male_adult_37_years	chr8	143039246	143039257	143039246	+	High_confidence	4	4	12	0.749462	3.027169	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.916667
esophagus_muscularis_mucosa_male_adult_37_years	chr11	117185990	117186035	117185990	+	High_confidence	3	3	9	0.562096	2.947703	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.888889
esophagus_muscularis_mucosa_male_adult_37_years	chr15	89041057	89041061	89041057	+	RAMPAGE_only	3	3	8	0.499641	2.500000	chr15	89040910	89041343	LTR|ERVL-MaLR|MLT1H2	+	chr15	89087458	89155390	ABHD2|ENST00000569411.5	+	89087458,89113724,89116321,89151676,89155366	89087516,89113824,89116521,89151852,89155390	0.500000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	188886156	188886430	188886296	+	RAMPAGE_only	50	51	605	37.785372	6.049940	chr3	188885956	188886311	LINE|L1|L1PA3	+	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.993388
esophagus_muscularis_mucosa_male_adult_37_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	28	30	33	2.061020	4.478232	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.636364
esophagus_muscularis_mucosa_male_adult_37_years	chr7	111413972	111414006	111414005	-	RAMPAGE_only	4	4	15	0.936827	3.521641	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	110663425	111392915	IMMP2L|ENST00000450877.5	-	110663425,110886592,110963499,111391837,111392801	110663721,110886695,110963565,111392019,111392915	0.533333
esophagus_muscularis_mucosa_male_adult_37_years	chr11	77175226	77175303	77175302	+	High_confidence	16	17	59	3.684855	5.200191	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.983051
esophagus_muscularis_mucosa_male_adult_37_years	chr12	56157286	56157364	56157286	+	High_confidence	6	6	39	2.435751	3.523119	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.948718
esophagus_muscularis_mucosa_male_adult_37_years	chr7	107580245	107580267	107580245	+	High_confidence	1091	1100	4683	292.477519	7.008969	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.939355
esophagus_muscularis_mucosa_male_adult_37_years	chr16	8842279	8842280	8842279	+	High_confidence	8	8	11	0.687007	2.921928	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.909091
esophagus_muscularis_mucosa_male_adult_37_years	chr9	111284874	111284875	111284874	-	High_confidence	14	14	17	1.061738	3.202820	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.705882
esophagus_muscularis_mucosa_male_adult_37_years	chr7	154928503	154928515	154928503	+	High_confidence	24	24	48	2.997848	4.309561	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.916667
esophagus_muscularis_mucosa_male_adult_37_years	chr19	7515244	7515271	7515244	+	High_confidence	5	5	41	2.560662	4.686582	chr19	7514930	7515246	LTR|ERV1|MER90	-	chr19	7515291	7519751	ZNF358|ENST00000596712.1	+	7515291,7519204	7515406,7519751	0.853659
esophagus_muscularis_mucosa_male_adult_37_years	chr19	20423697	20423718	20423697	-	RAMPAGE_only	6	6	15	0.936827	3.323231	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.933333
esophagus_muscularis_mucosa_male_adult_37_years	chr9	121281844	121281892	121281891	+	RAMPAGE_only	6	6	22	1.374014	3.754442	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr12	8567934	8567938	8567937	-	High_confidence	3	5	7	0.437186	2.807355	chr12	8567561	8568746	LTR|ERV1|MER52C	-	chr12	8548360	8567613	AC092746.1|ENST00000542819.1	-	8548360,8551999,8567493	8548661,8552140,8567613	0.714286
esophagus_muscularis_mucosa_male_adult_37_years	chr14	32075871	32075880	32075876	+	High_confidence	4	4	16	0.999283	3.280639	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32075890	32154827	STRG.34360.5	+	32075890,32090501,32117139,32146262,32149901,32152422,32154620	32076217,32094386,32117287,32146340,32150033,32152528,32154827	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr15	80059915	80059933	80059918	+	High_confidence	253	298	559	34.912435	5.440101	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.980322
esophagus_muscularis_mucosa_male_adult_37_years	chr2	227164620	227164645	227164620	+	High_confidence	11	11	19	1.186648	4.058814	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164577	227267247	STRG.8005.2	+	227164577,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267247	0.631579
esophagus_muscularis_mucosa_male_adult_37_years	chr17	59651214	59651236	59651214	+	RAMPAGE_only	3	3	9	0.562096	3.169925	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr2	219425186	219425187	219425186	+	RAMPAGE_only	11	11	11	0.687007	3.095795	chr2	219424901	219425196	SINE|Alu|AluSg	-	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr12	31121301	31121338	31121301	-	RAMPAGE_only	18	21	47	2.935393	4.108484	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.936170
esophagus_muscularis_mucosa_male_adult_37_years	chrX	16712879	16712890	16712889	-	High_confidence	4	4	17	1.061738	3.750000	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.941176
esophagus_muscularis_mucosa_male_adult_37_years	chr2	229586860	229586869	229586860	-	High_confidence	4	5	10	0.624552	2.725481	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229357631	229586919	STRG.8016.1	-	229357631,229366872,229388264,229407231,229418107,229447315,229477139,229512782,229546946,229585857,229586693	229358651,229367119,229388396,229407345,229418230,229447540,229477253,229512936,229547092,229586024,229586919	0.900000
esophagus_muscularis_mucosa_male_adult_37_years	chr12	8681676	8681677	8681676	+	High_confidence	12	12	14	0.874372	3.378783	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.714286
esophagus_muscularis_mucosa_male_adult_37_years	chr6	31587009	31587011	31587009	+	High_confidence	21	30	34	2.123475	4.432620	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr22	49657348	49657356	49657348	-	High_confidence	7	7	15	0.936827	3.521641	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49655927	49657406	STRG.46861.1	-	49655927	49657406	0.666667
esophagus_muscularis_mucosa_male_adult_37_years	chr20	44532569	44532570	44532569	+	High_confidence	25	28	32	1.998565	4.389365	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.968750
esophagus_muscularis_mucosa_male_adult_37_years	chr9	34233920	34233921	34233920	+	RAMPAGE_only	11	11	12	0.749462	3.277613	chr9	34233518	34234003	LINE|L2|L2a	-	chr9	34220902	34251698	STRG.24195.3	+	34220902,34234215,34235852,34241184,34249778,34250657,34251391	34220948,34234340,34236003,34242108,34249961,34250759,34251698	0.916667
esophagus_muscularis_mucosa_male_adult_37_years	chr1	60949443	60949467	60949443	-	RAMPAGE_only	2	3	9	0.562096	2.947703	chr1	60949259	60949438	SINE|MIR|MIRb	-	chr1	60940238	60970776	NFIA-AS2|ENST00000438559.5	-	60940238,60941179,60952510,60954321,60954484,60963565,60970547	60940631,60941252,60952684,60954370,60954602,60963804,60970776	0.555556
esophagus_muscularis_mucosa_male_adult_37_years	chr12	50924078	50924079	50924078	+	High_confidence	7	9	9	0.562096	2.947703	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr11	65181222	65181257	65181222	+	High_confidence	3	3	13	0.811917	2.751629	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.923077
esophagus_muscularis_mucosa_male_adult_37_years	chr19	54448601	54448602	54448601	+	High_confidence	9	9	12	0.749462	2.550341	chr19	54448651	54448966	SINE|Alu|AluSg	+	chr19	54448886	54462037	LENG8|ENST00000326764.9	+	54448886,54451289,54452092,54452650,54453545,54454429,54454950,54455363,54455966,54456324,54456635,54457746,54457933,54458102,54458313,54460765	54449310,54451382,54452267,54452752,54453656,54454682,54455092,54455567,54456245,54456465,54456921,54457848,54458002,54458232,54458521,54462037	0.666667
esophagus_muscularis_mucosa_male_adult_37_years	chr3	139344537	139344548	139344547	+	High_confidence	11	11	20	1.249103	3.721928	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr15	90467511	90467534	90467511	+	RAMPAGE_only	4	4	11	0.687007	2.721928	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.545455
esophagus_muscularis_mucosa_male_adult_37_years	chr10	17617790	17617797	17617790	-	High_confidence	5	5	13	0.811917	2.873141	chr10	17617759	17617913	SINE|Alu|FRAM	-	chr10	17589031	17617377	HACD1|ENST00000361271.7	-	17589031,17594204,17599289,17603559,17603725,17603929,17617082	17590446,17594383,17599411,17603648,17603744,17604047,17617377	0.769231
esophagus_muscularis_mucosa_male_adult_37_years	chr18	34709333	34709389	34709373	+	High_confidence	6	6	22	1.374014	3.784184	chr18	34709150	34709395	LINE|L2|L2c	-	chr18	34710231	34868812	DTNA|NM_001198941.1	+	34710231,34755975,34765960,34794036,34806218,34811958,34815908,34818163,34820790,34827592,34848295,34851830,34858284,34863965,34866110	34710445,34756043,34766041,34794250,34806304,34812113,34816014,34818330,34820915,34827676,34848383,34851928,34858398,34864062,34868812	0.636364
esophagus_muscularis_mucosa_male_adult_37_years	chr6	29497474	29497479	29497474	+	High_confidence	10	10	25	1.561379	4.293661	chr6	29497305	29497670	LTR|ERVL-MaLR|THE1D	+	chr6	29497508	29510556	AL662860.1|ENST00000436804.1	+	29497508,29505320,29507168,29510267	29497539,29505377,29507668,29510556	0.960000
esophagus_muscularis_mucosa_male_adult_37_years	chr17	4143196	4143215	4143199	+	High_confidence	47	51	126	7.869350	5.472168	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.960317
esophagus_muscularis_mucosa_male_adult_37_years	chr14	91883349	91883350	91883349	-	RAMPAGE_only	6	8	8	0.499641	2.500000	chr14	91883123	91883337	LINE|CR1|L3	-	chr14	91870042	91947074	FBLN5|ENST00000556154.5	-	91870042,91877486,91881291,91882953,91887192,91891220,91894949,91936946,91940564,91942906,91946710	91870385,91877682,91881418,91883076,91887312,91891337,91895072,91937201,91940616,91942961,91947074	0.625000
esophagus_muscularis_mucosa_male_adult_37_years	chr9	92536601	92536602	92536601	-	High_confidence	12	13	13	0.811917	3.584963	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.692308
esophagus_muscularis_mucosa_male_adult_37_years	chr2	10844420	10844421	10844420	+	RAMPAGE_only	7	7	11	0.687007	2.921928	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10878266	10885118	LOC101929733|NR_110575.1	+	10878266,10884833	10878444,10885118	0.636364
esophagus_muscularis_mucosa_male_adult_37_years	chr2	48479481	48479482	48479481	+	High_confidence	9	9	13	0.811917	3.392747	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48479394	48515385	STRG.5275.5	+	48479394,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515385	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr9	69307095	69307107	69307106	-	High_confidence	4	4	9	0.562096	2.750000	chr9	69306938	69307567	LTR|ERV1|MER41B	-	chr9	69296684	69307135	BANCR|ENST00000624238.2	-	69296684,69304935,69306147,69306853	69296867,69305077,69306290,69307135	0.777778
esophagus_muscularis_mucosa_male_adult_37_years	chr2	173182199	173182218	173182217	+	RAMPAGE_only	4	4	11	0.687007	2.663533	chr2	173182099	173182382	LINE|L1|L1MB7	+	chr2	173160009	173191177	MAP3K20|ENST00000480606.1	+	173160009,173169804,173182853,173187557,173190894,173191039	173160407,173169892,173182955,173187623,173190923,173191177	0.727273
esophagus_muscularis_mucosa_male_adult_37_years	chr18	7946867	7946898	7946878	+	High_confidence	10	12	35	2.185931	4.307715	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.742857
esophagus_muscularis_mucosa_male_adult_37_years	chr2	29114149	29114164	29114149	+	High_confidence	7	7	17	1.061738	3.024397	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.882353
esophagus_muscularis_mucosa_male_adult_37_years	chr1	77129077	77129078	77129077	+	High_confidence	464	533	546	34.100518	5.711478	chr1	77128993	77129084	DNA|hAT-Charlie|MER58B	+	chr1	77129113	77129668	AC113935.1|ENST00000471722.1	+	77129113	77129668	0.880952
esophagus_muscularis_mucosa_male_adult_37_years	chr19	35164213	35164245	35164213	+	High_confidence	3	3	16	0.999283	3.125000	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr11	60182527	60182554	60182553	-	High_confidence	9	10	50	3.122758	4.767572	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.620000
esophagus_muscularis_mucosa_male_adult_37_years	chr4	4269605	4269614	4269609	-	High_confidence	53	57	166	10.367557	3.893784	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.975904
esophagus_muscularis_mucosa_male_adult_37_years	chr2	86826129	86826134	86826129	-	RAMPAGE_only	3	4	10	0.624552	3.121928	chr2	86826118	86826191	SINE|MIR|MIR1_Amn	+	chr2	86815346	86861915	CD8B|ENST00000393759.6	-	86815346,86822320,86844921,86846683,86852996,86858056,86861822	86815718,86822374,86844958,86846773,86853086,86858416,86861915	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr20	38985964	38985984	38985968	+	High_confidence	7	7	26	1.623834	4.136842	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38985742	39011865	STRG.44663.3	+	38985742,38988812,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39010511	38986012,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39011865	0.846154
esophagus_muscularis_mucosa_male_adult_37_years	chr20	50172549	50172578	50172571	+	High_confidence	4	4	13	0.811917	3.238901	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.769231
esophagus_muscularis_mucosa_male_adult_37_years	chr12	65464045	65464219	65464218	+	RAMPAGE_only	9	9	67	4.184496	4.699422	chr12	65463992	65464279	SINE|Alu|AluY	+	chr12	65279484	65466868	MSRB3|ENST00000642404.1	+	65279484,65306862,65308528,65326825,65328525,65368997,65453727,65463154	65279517,65307026,65308655,65326934,65328603,65369026,65453825,65466868	0.985075
esophagus_muscularis_mucosa_male_adult_37_years	chr3	188217298	188217324	188217323	+	RAMPAGE_only	6	6	10	0.624552	3.169925	chr3	188216938	188217653	LINE|L2|L2b	-	chr3	188212932	188890671	LPP|NM_005578.4	+	188212932,188225404,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188213046,188225527,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.700000
esophagus_muscularis_mucosa_male_adult_37_years	chr2	143070964	143070965	143070964	+	RAMPAGE_only	14	14	16	0.999283	3.500000	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143091361	143238352	ARHGAP15|ENST00000409869.5	+	143091361,143092156,143155476,143202133,143216383,143228580,143235945	143091422,143092258,143155655,143202202,143216445,143228668,143238352	0.687500
esophagus_muscularis_mucosa_male_adult_37_years	chr9	33068848	33068930	33068848	-	RAMPAGE_only	2	3	15	0.936827	3.506891	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr14	81170372	81170403	81170402	-	High_confidence	4	4	10	0.624552	2.947703	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.800000
esophagus_muscularis_mucosa_male_adult_37_years	chr9	37426597	37426649	37426648	+	RAMPAGE_only	4	4	12	0.749462	2.855389	chr9	37426667	37426970	SINE|Alu|AluSx3	+	chr9	37427705	37436989	GRHPR|ENST00000497693.1	+	37427705,37436660	37432138,37436989	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr9	20658338	20658347	20658346	+	High_confidence	8	11	22	1.374014	3.061482	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658340	20694520	STRG.24055.1	+	20658340,20694519	20658826,20694520	0.590909
esophagus_muscularis_mucosa_male_adult_37_years	chr17	59892716	59892753	59892716	-	High_confidence	3	3	12	0.749462	3.418296	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.666667
esophagus_muscularis_mucosa_male_adult_37_years	chr6	79631425	79631453	79631444	+	High_confidence	2	2	10	0.624552	2.947703	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.900000
esophagus_muscularis_mucosa_male_adult_37_years	chr14	95516120	95516123	95516120	+	High_confidence	7	10	16	0.999283	3.506891	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.937500
esophagus_muscularis_mucosa_male_adult_37_years	chr3	188153195	188153229	188153195	+	High_confidence	2	2	14	0.874372	3.324863	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.642857
esophagus_muscularis_mucosa_male_adult_37_years	chr1	183959076	183959103	183959076	-	RAMPAGE_only	2	2	7	0.437186	2.521641	chr1	183959026	183959127	LINE|L2|L2-3_Crp	+	chr1	183937964	183964500	COLGALT2|ENST00000367520.3	-	183937964,183940580,183944195,183945431,183951006,183954761,183963900	183939037,183940787,183944323,183945564,183951113,183954838,183964500	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr5	140700445	140700452	140700445	+	High_confidence	553	676	1178	73.572180	4.740470	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.988964
esophagus_muscularis_mucosa_male_adult_37_years	chr16	15798662	15798670	15798664	-	RAMPAGE_only	194	228	441	27.542726	6.453232	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.961451
esophagus_muscularis_mucosa_male_adult_37_years	chr15	93863033	93863066	93863039	+	High_confidence	16	16	62	3.872220	5.465745	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863050	93878356	STRG.37359.1	+	93863050,93865373,93878033	93863216,93865648,93878356	0.612903
esophagus_muscularis_mucosa_male_adult_37_years	chr11	94873541	94873599	94873541	+	RAMPAGE_only	5	6	27	1.686289	3.278061	chr11	94873471	94873673	SINE|MIR|MIRb	-	chr11	94768370	94876753	AMOTL1|ENST00000433060.2	+	94768370,94795010,94799389,94821529,94830049,94831451,94850113,94853932,94859524,94864734,94865941,94869197,94870688	94768560,94795160,94800311,94821821,94830194,94831541,94850259,94854082,94859715,94864860,94866168,94869473,94876753	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr19	48868500	48868537	48868536	-	High_confidence	7	7	27	1.686289	3.408053	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868454	PLEKHA4|ENST00000355496.9	-	48837096,48838016,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868454	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr9	18702070	18702071	18702070	-	High_confidence	35	38	46	2.872937	4.970573	chr9	18701896	18702263	LTR|ERVL-MaLR|THE1B	-	chr9	18656954	18702093	STRG.24092.1	-	18656954,18670172,18694347,18701979	18657739,18670287,18694419,18702093	0.782609
esophagus_muscularis_mucosa_male_adult_37_years	chr5	154038408	154038409	154038408	-	High_confidence	12	12	14	0.874372	3.546594	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	153991702	154038866	FAM114A2|ENST00000522858.5	-	153991702,153994918,153997802,154002250,154002846,154011240,154026398,154027175,154028148,154029488,154033790,154034277,154034743,154038292	153993110,153994972,153997875,154002390,154002969,154011320,154026522,154027334,154028283,154029580,154033883,154034377,154034967,154038866	0.714286
esophagus_muscularis_mucosa_male_adult_37_years	chr5	157107313	157107317	157107316	-	High_confidence	6	6	11	0.687007	2.721928	chr5	157107099	157107287	DNA|hAT-Charlie|MER5A	-	chr5	157095449	157107283	HAVCR2|ENST00000521665.1	-	157095449,157098857,157104665,157106626	157095459,157098901,157104749,157107283	0.909091
esophagus_muscularis_mucosa_male_adult_37_years	chr8	123507100	123507107	123507100	-	High_confidence	2	2	7	0.437186	2.584963	chr8	123507024	123507131	LINE|L2|L2a	+	chr8	123503105	123506625	FBXO32|ENST00000524000.5	-	123503105,123504603,123506391	123503462,123504747,123506625	0.857143
esophagus_muscularis_mucosa_male_adult_37_years	chr5	140633653	140633673	140633672	-	High_confidence	5	6	10	0.624552	2.846439	chr5	140633624	140633721	LINE|CR1|L3	+	chr5	140632740	140633672	CD14|ENST00000519715.1	-	140632740,140633068,140633551	140632980,140633192,140633672	0.800000
esophagus_muscularis_mucosa_male_adult_37_years	chr14	32402135	32402136	32402135	+	RAMPAGE_only	35	35	35	2.185931	2.970208	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32428396	32545455	STRG.34365.5	+	32428396,32433459,32438673,32535553,32545229	32428565,32433817,32439405,32535805,32545455	0.971429
esophagus_muscularis_mucosa_male_adult_37_years	chr13	52570268	52570280	52570279	+	RAMPAGE_only	2	3	7	0.437186	2.584963	chr13	52569964	52570306	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.571429
esophagus_muscularis_mucosa_male_adult_37_years	chr11	119046583	119046604	119046603	-	RAMPAGE_only	5	5	9	0.562096	2.750000	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.888889
esophagus_muscularis_mucosa_male_adult_37_years	chr1	184590753	184590808	184590807	+	RAMPAGE_only	4	4	15	0.936827	2.682589	chr1	184590844	184591183	DNA|TcMar-Tigger|MER2B	+	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr1	192908069	192908070	192908069	+	High_confidence	4	5	7	0.437186	2.807355	chr1	192907972	192908112	SINE|MIR|MIRb	-	chr1	192908078	192912392	STRG.3453.1	+	192908078,192910051,192910532,192911232	192908319,192910211,192910607,192912392	0.571429
esophagus_muscularis_mucosa_male_adult_37_years	chr12	55516318	55516319	55516318	+	RAMPAGE_only	5	6	6	0.374731	2.584963	chr12	55515725	55517184	LINE|L1|L1M1	+	chr12	56158160	56161574	MYL6|ENST00000550697.5	+	56158160,56158683,56159586,56159974,56160242,56160625,56161386	56158404,56158711,56159730,56160148,56160320,56160670,56161574	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr4	88533222	88533223	88533222	-	RAMPAGE_only	19	19	19	1.186648	4.037401	chr4	88532886	88533429	LTR|ERVL|MLT2A2	-	chr4	88520984	88523813	PYURF|ENST00000273968.4	-	88520984,88523497	88522029,88523813	0.736842
esophagus_muscularis_mucosa_male_adult_37_years	chr7	134527596	134527597	134527596	+	High_confidence	7	9	10	0.624552	2.947703	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.900000
esophagus_muscularis_mucosa_male_adult_37_years	chr4	128570470	128570488	128570487	-	High_confidence	5	5	13	0.811917	3.392747	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr12	643625	643636	643635	-	High_confidence	86	86	224	13.989956	5.550696	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.968750
esophagus_muscularis_mucosa_male_adult_37_years	chr17	59619894	59619923	59619894	+	High_confidence	1495	1662	4087	255.254243	5.510177	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.955713
esophagus_muscularis_mucosa_male_adult_37_years	chr9	92536651	92536704	92536674	-	High_confidence	8	8	30	1.873655	4.418157	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.866667
esophagus_muscularis_mucosa_male_adult_37_years	chr6	31587195	31587259	31587201	+	High_confidence	9	9	53	3.310124	4.569730	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	39154563	39154566	39154565	-	High_confidence	9	12	16	0.999283	3.327820	chr3	39154504	39154649	LINE|L2|L2c	+	chr3	39142337	39154562	CSRNP1|ENST00000514182.1	-	39142337,39144136,39144996,39146477,39154496	39144044,39144451,39145256,39146722,39154562	0.937500
esophagus_muscularis_mucosa_male_adult_37_years	chr5	34918052	34918053	34918052	-	High_confidence	8	8	8	0.499641	2.750000	chr5	34918029	34918308	SINE|Alu|AluJo	+	chr5	34908171	34918989	RAD1|ENST00000341754.8	-	34908171,34909257,34911553,34913469,34914694,34915415,34918051,34918231,34918521	34908948,34909356,34911812,34913578,34914961,34915626,34918136,34918297,34918989	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr20	45407849	45407862	45407861	-	High_confidence	3	3	8	0.499641	2.521641	chr20	45407777	45407881	SINE|MIR|MIRb	-	chr20	45404075	45407877	TP53TG5|ENST00000468375.1	-	45404075,45405716,45407748	45404307,45405820,45407877	0.500000
esophagus_muscularis_mucosa_male_adult_37_years	chr4	81154211	81154222	81154221	-	High_confidence	4	4	10	0.624552	2.846439	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr7	73683420	73683439	73683420	-	High_confidence	35	35	103	6.432882	5.592221	chr7	73683365	73683430	LINE|RTE-BovB|MamRTE1	+	chr7	73680917	73683451	DNAJC30|NM_032317.2	-	73680917	73683451	0.990291
esophagus_muscularis_mucosa_male_adult_37_years	chr17	34255540	34255591	34255590	+	High_confidence	4	4	11	0.687007	2.550341	chr17	34255527	34255643	SINE|MIR|MIRc	-	chr17	34255284	34257203	CCL2|ENST00000225831.4	+	34255284,34256221,34256721	34255425,34256339,34257203	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr8	80485592	80485605	80485592	+	High_confidence	7	7	16	0.999283	3.327820	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.750000
esophagus_muscularis_mucosa_male_adult_37_years	chr17	2975599	2975600	2975599	+	RAMPAGE_only	7	7	7	0.437186	2.807355	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2854007	3037727	STRG.39170.1	+	2854007,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2854102,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037727	0.857143
esophagus_muscularis_mucosa_male_adult_37_years	chr17	61952964	61952990	61952981	-	RAMPAGE_only	3	3	10	0.624552	2.947703	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.900000
esophagus_muscularis_mucosa_male_adult_37_years	chr4	11336762	11336783	11336775	+	High_confidence	134	148	346	21.609486	5.833901	chr4	11336585	11336947	LTR|ERVL-MaLR|MLT1O	+	chr4	11336768	11356022	STRG.11711.1	+	11336768,11337322,11347193	11336832,11337419,11356022	0.661850
esophagus_muscularis_mucosa_male_adult_37_years	chr4	87524545	87524563	87524545	-	RAMPAGE_only	2	2	7	0.437186	2.584963	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87473417	87529092	SPARCL1|ENST00000503414.5	-	87473417,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87497130,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87497239,87499585,87529092	0.714286
esophagus_muscularis_mucosa_male_adult_37_years	chr7	158740224	158740281	158740280	-	RAMPAGE_only	27	32	102	6.370426	5.672995	chr7	158740209	158740388	LTR|ERV1|MER49	+	chr7	158733612	158744217	ESYT2|ENST00000435514.3	-	158733612,158734421,158735502,158737047,158739022,158741522,158743528	158734252,158734471,158735608,158737179,158739121,158741896,158744217	0.558824
esophagus_muscularis_mucosa_male_adult_37_years	chr13	60410080	60410081	60410080	+	RAMPAGE_only	17	17	17	1.061738	3.572469	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60397830	60573864	TDRD3|ENST00000648252.1	+	60397830,60400255,60402717,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573615	60398631,60400292,60402815,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573864	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr20	56367406	56367436	56367435	+	RAMPAGE_only	3	3	10	0.624552	2.721928	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr19	50379825	50379860	50379859	+	RAMPAGE_only	5	6	22	1.374014	3.558519	chr19	50379903	50379991	SINE|MIR|MIRc	+	chr19	50377244	50382944	NR1H2|ENST00000593926.5	+	50377244,50377586,50377732,50378148,50378521,50379001,50379779,50381965,50382455	50377328,50377648,50377870,50378439,50378796,50379181,50379879,50382174,50382944	0.954545
esophagus_muscularis_mucosa_male_adult_37_years	chr4	39627120	39627121	39627120	-	High_confidence	9	9	9	0.562096	2.947703	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr16	20736882	20736883	20736882	-	RAMPAGE_only	11	11	17	1.061738	2.933955	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	37058855	37058907	37058886	-	RAMPAGE_only	4	5	16	0.999283	3.750000	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	21644433	21644442	21644436	-	RAMPAGE_only	4	4	10	0.624552	2.921928	chr3	21644048	21644639	DNA|TcMar-Tigger|MER6A	-	chr3	21420997	21751324	ZNF385D|NM_024697.2	-	21420997,21423962,21425491,21436969,21510860,21564573,21664885,21750894	21421447,21424064,21425670,21437203,21511023,21564684,21665028,21751324	0.500000
esophagus_muscularis_mucosa_male_adult_37_years	chr14	20928338	20928339	20928338	-	RAMPAGE_only	7	7	7	0.437186	2.521641	chr14	20928214	20928534	LTR|ERVL|MER21C	-	chr14	20801227	20803278	RNASE1|ENST00000397967.4	-	20801227,20802796	20802093,20803278	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chrX	5726228	5726272	5726228	-	High_confidence	3	3	12	0.749462	2.845351	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5718766	5726217	STRG.46966.1	-	5718766,5725929	5719872,5726217	0.916667
esophagus_muscularis_mucosa_male_adult_37_years	chr1	202551736	202551747	202551736	+	RAMPAGE_only	9	9	22	1.374014	4.277613	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.636364
esophagus_muscularis_mucosa_male_adult_37_years	chr10	44977107	44977156	44977107	-	RAMPAGE_only	5	7	22	1.374014	3.784184	chr10	44977078	44977207	SINE|MIR|MIR	-	chr10	44976128	44978810	DEPP1|ENST00000298295.3	-	44976128,44978617	44978055,44978810	0.863636
esophagus_muscularis_mucosa_male_adult_37_years	chr17	8310240	8310257	8310240	+	High_confidence	4	4	9	0.562096	2.725481	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.666667
esophagus_muscularis_mucosa_male_adult_37_years	chr17	4736357	4736404	4736361	-	High_confidence	15	19	54	3.372579	4.028055	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.981481
esophagus_muscularis_mucosa_male_adult_37_years	chr7	6590236	6590247	6590246	+	High_confidence	4	4	9	0.562096	2.500000	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.888889
esophagus_muscularis_mucosa_male_adult_37_years	chr1	12501854	12501870	12501863	+	RAMPAGE_only	2	2	8	0.499641	2.807355	chr1	12501629	12502031	LINE|L2|L2c	-	chr1	12496787	12512047	STRG.299.12	+	12496787,12497499,12506852,12508892	12497208,12497631,12507093,12512047	0.750000
esophagus_muscularis_mucosa_male_adult_37_years	chr7	80369531	80369569	80369531	+	High_confidence	9	9	30	1.873655	4.389898	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.933333
esophagus_muscularis_mucosa_male_adult_37_years	chr21	38907041	38907053	38907046	-	High_confidence	3	3	11	0.687007	2.921928	chr21	38906916	38907046	SINE|MIR|MIR3	-	chr21	38906540	38907060	STRG.45816.1	-	38906540	38907060	0.727273
esophagus_muscularis_mucosa_male_adult_37_years	chr7	134432435	134432436	134432435	-	High_confidence	5	5	8	0.499641	2.521641	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.875000
esophagus_muscularis_mucosa_male_adult_37_years	chr2	87469947	87469950	87469949	+	RAMPAGE_only	7	13	14	0.874372	3.085055	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87455844	87521504	CYTOR|ENST00000645138.1	+	87455844,87480222,87521206	87455973,87480423,87521504	0.500000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	9986887	9986888	9986887	+	High_confidence	5	5	7	0.437186	2.521641	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr1	158146895	158146896	158146895	-	High_confidence	8	10	12	0.749462	2.625815	chr1	158146568	158147206	LTR|ERVL|MER70B	-	chr1	158132039	158146929	LINC01704|ENST00000635685.1	-	158132039,158146766	158132656,158146929	0.750000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	135965673	135965749	135965748	+	High_confidence	33	34	254	15.863611	6.316514	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.996063
esophagus_muscularis_mucosa_male_adult_37_years	chr20	50131130	50131140	50131139	-	High_confidence	20	20	40	2.498206	4.855790	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.975000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	187738135	187738136	187738135	+	High_confidence	144	154	183	11.429294	5.593225	chr3	187738117	187738188	SINE|MIR|MIR3	-	chr3	187738113	187739994	STRG.11277.1	+	187738113	187739994	0.978142
esophagus_muscularis_mucosa_male_adult_37_years	chr2	179043807	179043808	179043807	-	RAMPAGE_only	10	10	11	0.687007	3.121928	chr2	179042647	179044414	LINE|L1|L1PA10	+	chr2	178829756	179050059	CCDC141|NM_173648.3	-	178829756,178836893,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900,178886751,178888526,178905328,178918712,178944534,178961229,178975056,178978483,179047283,179049839	178834440,178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178885092,178886871,178888668,178905501,178918907,178944651,178961483,178975165,178978675,179047406,179050059	0.727273
esophagus_muscularis_mucosa_male_adult_37_years	chr1	78620056	78620058	78620056	+	High_confidence	10	17	17	1.061738	3.852169	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr10	45000453	45000515	45000514	+	High_confidence	9	12	36	2.248386	4.260530	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.972222
esophagus_muscularis_mucosa_male_adult_37_years	chr3	134485403	134485471	134485443	-	High_confidence	8	9	52	3.247668	5.118427	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.942308
esophagus_muscularis_mucosa_male_adult_37_years	chr19	36850342	36850377	36850376	+	High_confidence	4	5	16	0.999283	3.773557	chr19	36850362	36850429	LTR|ERV1|MER67D	-	chr19	36850360	36879572	ZNF345|ENST00000589046.1	+	36850360,36851727,36876784	36850515,36851904,36879572	0.562500
esophagus_muscularis_mucosa_male_adult_37_years	chr2	186602121	186602131	186602130	+	RAMPAGE_only	3	3	7	0.437186	2.521641	chr2	186602116	186602175	LINE|RTE-BovB|MamRTE1	-	chr2	186600204	186677441	ITGAV|ENST00000433736.6	+	186600204,186602020,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186600381,186602151,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186677441	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	188877561	188877682	188877661	+	RAMPAGE_only	7	7	33	2.061020	4.741364	chr3	188877563	188877737	SINE|Alu|AluJr	+	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr7	103353924	103353957	103353956	+	High_confidence	4	4	8	0.499641	2.750000	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.875000
esophagus_muscularis_mucosa_male_adult_37_years	chr4	152412488	152412529	152412528	-	High_confidence	8	9	27	1.686289	4.088221	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.925926
esophagus_muscularis_mucosa_male_adult_37_years	chr1	174874418	174874439	174874433	+	High_confidence	4	4	19	1.186648	3.932138	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874457	174958182	RABGAP1L|ENST00000478442.5	+	174874457,174877391,174957456,174957890	174874506,174877605,174957549,174958182	0.842105
esophagus_muscularis_mucosa_male_adult_37_years	chr17	59620042	59620052	59620043	+	High_confidence	14	22	55	3.435034	4.778424	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59695112	STRG.40626.1	+	59619942,59644275,59647397,59648239,59651202,59655853,59660390,59661442,59663841,59664786,59666102,59666479,59666796,59668776,59673646,59674700,59676953,59679396,59680911,59681294,59681646,59682270,59682628,59682906,59683094,59683386,59683624,59683874,59685055,59685586,59687000,59690635,59693727	59620173,59644483,59647666,59648401,59651316,59656027,59660588,59661643,59663994,59664909,59666240,59666644,59666977,59668940,59673772,59674843,59677188,59679519,59681057,59681478,59681839,59682428,59682793,59683014,59683262,59683536,59683756,59683985,59685226,59685808,59687021,59690711,59695112	0.945455
esophagus_muscularis_mucosa_male_adult_37_years	chr2	227534915	227534933	227534932	+	RAMPAGE_only	10	10	24	1.498924	3.657268	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chrX	11351636	11351676	11351675	-	RAMPAGE_only	36	36	65	4.059585	5.359070	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.676923
esophagus_muscularis_mucosa_male_adult_37_years	chr19	11539683	11539706	11539705	+	High_confidence	11	11	54	3.372579	5.171373	chr19	11539660	11539789	SINE|MIR|MIRb	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	0.851852
esophagus_muscularis_mucosa_male_adult_37_years	chr5	139364701	139364724	139364701	+	RAMPAGE_only	2	2	8	0.499641	2.807355	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.625000
esophagus_muscularis_mucosa_male_adult_37_years	chrX	5726193	5726194	5726193	-	High_confidence	19	19	20	1.249103	3.826875	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5718766	5726217	STRG.46966.1	-	5718766,5725929	5719872,5726217	0.950000
esophagus_muscularis_mucosa_male_adult_37_years	chr11	58578123	58578168	58578132	-	High_confidence	11	19	54	3.372579	5.305542	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.703704
esophagus_muscularis_mucosa_male_adult_37_years	chr2	48529371	48529386	48529375	+	High_confidence	13	14	39	2.435751	4.648510	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	0.692308
esophagus_muscularis_mucosa_male_adult_37_years	chr9	77944991	77945035	77945016	-	RAMPAGE_only	5	5	12	0.749462	3.277613	chr9	77944910	77945186	DNA|TcMar-Tigger|Tigger19b	+	chr9	77797527	78030604	GNAQ|ENST00000411677.1	-	77797527,77815615,77922160,78030514	77797648,77815770,77922345,78030604	0.500000
esophagus_muscularis_mucosa_male_adult_37_years	chr10	122127024	122127025	122127024	+	High_confidence	9	9	10	0.624552	3.169925	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.800000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	28347646	28347654	28347653	-	High_confidence	29	29	49	3.060303	5.306171	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.755102
esophagus_muscularis_mucosa_male_adult_37_years	chr20	44498964	44499014	44498964	-	RAMPAGE_only	2	2	13	0.811917	3.418296	chr20	44498888	44499217	LINE|L2|L2b	+	chr20	44497430	44522109	SERINC3|ENST00000342374.4	-	44497430,44501072,44503814,44504800,44506826,44509890,44511288,44512800,44513878,44521912	44500434,44501300,44503995,44504891,44506996,44510028,44511368,44512994,44514040,44522109	0.923077
esophagus_muscularis_mucosa_male_adult_37_years	chr15	65642912	65642928	65642912	+	High_confidence	4	4	14	0.874372	3.664498	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr2	218287279	218287306	218287279	-	High_confidence	22	22	53	3.310124	5.015371	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.679245
esophagus_muscularis_mucosa_male_adult_37_years	chr16	8842153	8842215	8842153	+	High_confidence	19	19	56	3.497489	4.890095	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.946429
esophagus_muscularis_mucosa_male_adult_37_years	chr7	30563894	30563895	30563894	-	High_confidence	13	15	19	1.186648	3.892407	chr7	30563654	30564076	LTR|ERVL-MaLR|MLT1C	-	chr7	30548356	30564617	GARS-DT|ENST00000355837.4	-	30548356,30563722	30562128,30564617	0.789474
esophagus_muscularis_mucosa_male_adult_37_years	chr5	55982777	55982800	55982799	-	High_confidence	6	6	13	0.811917	3.022055	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.923077
esophagus_muscularis_mucosa_male_adult_37_years	chr4	184768336	184768378	184768336	-	RAMPAGE_only	3	4	19	1.186648	3.947703	chr4	184768056	184768306	SINE|MIR|MIRc	-	chr4	184755600	184766702	ACSL1|ENST00000503407.5	-	184755600,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621	184757265,184757706,184757920,184760500,184762493,184763255,184764925,184765986,184766702	0.842105
esophagus_muscularis_mucosa_male_adult_37_years	chr15	65244454	65244457	65244454	-	RAMPAGE_only	18	20	31	1.936110	4.389898	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.967742
esophagus_muscularis_mucosa_male_adult_37_years	chr8	56559496	56559497	56559496	-	High_confidence	76	77	92	5.745875	5.783901	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.619565
esophagus_muscularis_mucosa_male_adult_37_years	chr1	202582560	202582584	202582571	+	RAMPAGE_only	4	4	10	0.624552	2.947703	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.900000
esophagus_muscularis_mucosa_male_adult_37_years	chr1	28236208	28236247	28236219	+	High_confidence	3	3	18	1.124193	3.016876	chr1	28236202	28236266	LTR|ERVL|LTR16D1	-	chr1	28236153	28238098	ATP5IF1|ENST00000465645.1	+	28236153,28236360	28236270,28238098	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr8	27977125	27977126	27977125	-	RAMPAGE_only	33	35	46	2.872937	4.726144	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.847826
esophagus_muscularis_mucosa_male_adult_37_years	chr18	75280697	75280706	75280705	+	RAMPAGE_only	3	3	8	0.499641	2.521641	chr18	75280540	75280747	SINE|MIR|MIRb	+	chr18	75282863	75289943	TSHZ1|ENST00000584217.1	+	75282863	75289943	0.750000
esophagus_muscularis_mucosa_male_adult_37_years	chr2	200889135	200889154	200889153	-	High_confidence	17	17	45	2.810482	4.926037	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889154	PPIL3|ENST00000392283.8	-	200870955,200876918,200881420,200882341,200885697,200887612,200888955	200871521,200877037,200881488,200882435,200885772,200887685,200889154	0.955556
esophagus_muscularis_mucosa_male_adult_37_years	chr11	123061128	123061322	123061256	-	High_confidence	19	22	227	14.177322	6.090229	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.982379
esophagus_muscularis_mucosa_male_adult_37_years	chr15	42404741	42404767	42404766	+	High_confidence	4	4	9	0.562096	2.503258	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404778	42412315	CAPN3|ENST00000337571.8	+	42404778,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412315	0.666667
esophagus_muscularis_mucosa_male_adult_37_years	chr1	26158899	26158900	26158899	+	High_confidence	7	7	7	0.437186	2.521641	chr1	26158769	26158905	SINE|MIR|MIR3	+	chr1	26159019	26162628	FAM110D|NM_024869.2	+	26159019,26161211	26159126,26162628	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr5	109383417	109383468	109383446	-	High_confidence	4	4	37	2.310841	3.987164	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.945946
esophagus_muscularis_mucosa_male_adult_37_years	chr8	116648864	116648917	116648864	-	RAMPAGE_only	9	9	38	2.373296	4.448861	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	146222301	146222344	146222301	-	High_confidence	2	2	10	0.624552	3.121928	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146206586	146222371	PLSCR4|ENST00000498625.1	-	146206586,146220814,146222064	146206761,146220925,146222371	0.800000
esophagus_muscularis_mucosa_male_adult_37_years	chr9	39810033	39810118	39810033	-	High_confidence	10	10	50	3.122758	4.596566	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.920000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	188884122	188884372	188884174	+	RAMPAGE_only	19	19	238	14.864328	6.445494	chr3	188884141	188884305	SINE|MIR|MIRc	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr15	75626289	75626305	75626304	-	High_confidence	6	6	12	0.749462	2.625815	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598121	75626293	STRG.37040.4	-	75598121,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626293	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr9	122164574	122164596	122164595	+	High_confidence	10	15	35	2.185931	4.395999	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122164614	122174568	MORN5|ENST00000418632.1	+	122164614,122166767,122169644,122174495	122164647,122166915,122169756,122174568	0.600000
esophagus_muscularis_mucosa_male_adult_37_years	chr15	56737904	56737906	56737905	-	RAMPAGE_only	8	15	17	1.061738	3.454822	chr15	56737845	56738254	LTR|ERVL-MaLR|MLT1J2	+	chr15	56630175	56734086	ZNF280D|NM_001002843.2	-	56630175,56635194,56642951,56654197,56654384,56658423,56666394,56666678,56668822,56676669,56677573,56678663,56682253,56689040,56689299,56693097,56700932,56701172,56704120,56707262,56733457	56632122,56635250,56642997,56654234,56654503,56658486,56666535,56666986,56668957,56676816,56677674,56678821,56682477,56689150,56689470,56693215,56701072,56701238,56704267,56707306,56734086	0.705882
esophagus_muscularis_mucosa_male_adult_37_years	chr12	110000084	110000091	110000084	-	RAMPAGE_only	10	10	19	1.186648	3.787144	chr12	110000006	110000153	SINE|MIR|MIR	-	chr12	109929801	109996389	GIT2|NM_001135213.1	-	109929801,109934021,109938379,109939164,109947255,109953091,109959846,109961277,109961612,109965525,109967313,109967457,109980951,109983372,109983607,109988962,109989689,109991626,109996172	109933190,109934085,109938568,109939247,109947504,109953234,109959958,109961375,109961685,109965577,109967319,109967503,109981046,109983503,109983694,109989068,109989802,109991760,109996389	0.947368
esophagus_muscularis_mucosa_male_adult_37_years	chr2	27772162	27772171	27772162	+	High_confidence	3	6	12	0.749462	3.027169	chr2	27772098	27772242	SINE|MIR|MIR3	-	chr2	27772189	27779697	MRPL33|ENST00000476552.1	+	27772189,27772673,27774423,27779432	27772385,27772692,27774530,27779697	0.916667
esophagus_muscularis_mucosa_male_adult_37_years	chr4	2867841	2867851	2867841	+	High_confidence	3	4	10	0.624552	2.921928	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr11	72111411	72111433	72111432	-	High_confidence	5	7	13	0.811917	3.584963	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.923077
esophagus_muscularis_mucosa_male_adult_37_years	chr6	166957403	166957431	166957430	-	High_confidence	5	5	12	0.749462	2.913977	chr6	166957416	166957859	LINE|L2|L2a	+	chr6	166929539	166957184	RNASET2|ENST00000476238.6	-	166929539,166931043,166934090,166938894,166943018,166946681,166948569,166952487,166956096,166957125	166929791,166931118,166934136,166939008,166943089,166946739,166948625,166952548,166956191,166957184	0.916667
esophagus_muscularis_mucosa_male_adult_37_years	chr1	238486008	238486035	238486034	-	High_confidence	7	12	45	2.810482	4.743300	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.755556
esophagus_muscularis_mucosa_male_adult_37_years	chr5	176411458	176411459	176411458	-	RAMPAGE_only	8	9	12	0.749462	2.913977	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392641	176416261	CLTB|ENST00000508425.5	-	176392641,176397943,176410256,176416176	176392932,176398047,176410303,176416261	0.583333
esophagus_muscularis_mucosa_male_adult_37_years	chr2	105329670	105329674	105329673	-	High_confidence	5	5	10	0.624552	2.503258	chr2	105329666	105329774	LTR|ERV1|LTR2752	-	chr2	105264413	105329704	STRG.6262.1	-	105264413,105267216,105269271,105272854,105273543,105275559,105277613,105280381,105284315,105296355,105298510,105307613,105329624	105267188,105267559,105269705,105273014,105273690,105275703,105277671,105280723,105284398,105296510,105298705,105308318,105329704	0.900000
esophagus_muscularis_mucosa_male_adult_37_years	chr1	111473767	111473768	111473767	+	High_confidence	5	5	8	0.499641	2.500000	chr1	111473535	111473833	SINE|Alu|AluYm1	+	chr1	111473791	111478512	C1orf162|ENST00000343534.9	+	111473791,111476017,111476797,111477333,111477650,111477982	111474030,111476065,111476867,111477428,111477775,111478512	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr1	21833822	21833906	21833822	-	High_confidence	2	2	15	0.936827	3.664498	chr1	21833729	21833783	LINE|L2|L2c	-	chr1	21829992	21833577	HSPG2|ENST00000635682.1	-	21829992,21830981,21831214,21831462,21831651,21832494,21832874,21833267,21833466	21830091,21831090,21831324,21831562,21831796,21832606,21832892,21833384,21833577	0.933333
esophagus_muscularis_mucosa_male_adult_37_years	chr4	137700916	137700932	137700916	-	RAMPAGE_only	3	3	11	0.687007	2.721928	chr4	137700532	137701143	LTR|ERV1|LTR27D	+	chr4	137645264	137655174	AC116563.1|ENST00000505454.1	-	137645264,137648364,137652162,137655127	137645493,137648459,137652187,137655174	0.727273
esophagus_muscularis_mucosa_male_adult_37_years	chr13	30429288	30429289	30429288	-	RAMPAGE_only	7	9	9	0.562096	2.503258	chr13	30428989	30429302	SINE|Alu|AluSq2	+	chr13	30202629	30307487	KATNAL1|NM_032116.4	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30307330	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307487	0.777778
esophagus_muscularis_mucosa_male_adult_37_years	chr13	113187330	113187344	113187336	-	High_confidence	6	6	19	1.186648	3.932138	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.736842
esophagus_muscularis_mucosa_male_adult_37_years	chr22	31082936	31082941	31082940	+	High_confidence	6	6	14	0.874372	2.719295	chr22	31082905	31083026	SINE|MIR|MIRc	-	chr22	31082859	31104623	SMTN|ENST00000619644.4	+	31082859,31083178,31087964,31088512,31088698,31088871,31089698,31090107,31090807,31090960,31091674,31093783,31095302,31095533,31096732,31096997,31097268,31098666,31099061,31099744,31104315	31083002,31083309,31088113,31088606,31088777,31088969,31090019,31090180,31090879,31091482,31091847,31093876,31095455,31095609,31096897,31097060,31097338,31098840,31099179,31099896,31104623	0.928571
esophagus_muscularis_mucosa_male_adult_37_years	chr19	48868595	48868614	48868595	-	High_confidence	234	240	898	56.084735	7.272159	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.997773
esophagus_muscularis_mucosa_male_adult_37_years	chr10	95437804	95437816	95437815	-	RAMPAGE_only	12	12	24	1.498924	3.334963	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.958333
esophagus_muscularis_mucosa_male_adult_37_years	chr12	119179219	119179241	119179240	+	High_confidence	5	5	11	0.687007	2.913977	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr2	173223954	173223985	173223984	+	RAMPAGE_only	4	4	22	1.374014	3.823068	chr2	173223967	173224276	LINE|L2|L2a	-	chr2	173075841	173227146	MAP3K20|ENST00000338983.7	+	173075841,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173221149	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173227146	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	180870516	180870519	180870518	-	High_confidence	6	9	11	0.687007	3.321928	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180747935	180870512	STRG.11154.1	-	180747935,180751347,180781983,180847506,180870046	180748316,180751410,180782124,180847624,180870512	0.818182
esophagus_muscularis_mucosa_male_adult_37_years	chr2	8783139	8783166	8783160	-	RAMPAGE_only	6	6	16	0.999283	3.506891	chr2	8782911	8783214	SINE|Alu|AluSq	+	chr2	8725559	8802971	KIDINS220|ENST00000496383.5	-	8725559,8726886,8733443,8734654,8736867,8750111,8751465,8770669,8776747,8778638,8778895,8779673,8785740,8786205,8788646,8789879,8791059,8793809,8796770,8798201,8800399,8802929	8725599,8726943,8733680,8734753,8736999,8750335,8751644,8770832,8776892,8778727,8779139,8779814,8786030,8786357,8788812,8790059,8791224,8793987,8796869,8798300,8800498,8802971	0.937500
esophagus_muscularis_mucosa_male_adult_37_years	chr21	28048446	28048447	28048446	+	High_confidence	345	349	378	23.608051	4.445322	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.949735
esophagus_muscularis_mucosa_male_adult_37_years	chr12	9065162	9065181	9065169	+	High_confidence	6	9	36	2.248386	4.400432	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.888889
esophagus_muscularis_mucosa_male_adult_37_years	chr4	184855621	184855685	184855652	-	High_confidence	17	19	113	7.057433	6.131910	chr4	184855538	184855766	LTR|ERVL-MaLR|MLT1J1	-	chr4	184843295	184855652	MIR3945HG|NR_132989.1	-	184843295,184850494,184855468	184844925,184850599,184855652	0.646018
esophagus_muscularis_mucosa_male_adult_37_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	12	12	12	0.749462	3.418296	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.500000
esophagus_muscularis_mucosa_male_adult_37_years	chr2	48479384	48479385	48479384	+	High_confidence	51	51	58	3.622399	5.209912	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48479394	48515385	STRG.5275.5	+	48479394,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515385	0.931034
esophagus_muscularis_mucosa_male_adult_37_years	chr2	96342308	96342322	96342321	+	RAMPAGE_only	3	3	7	0.437186	2.521641	chr2	96342343	96342558	SINE|MIR|MIR	+	chr2	96335817	96373815	NCAPH|ENST00000455200.5	+	96335817,96341391,96342049,96342755,96343165,96344104,96351830,96353305,96354182,96359044,96360142,96360587,96364480,96365875,96367256,96368971,96369424,96373291	96335848,96341894,96342140,96342848,96343304,96344229,96352020,96353397,96354388,96359193,96360249,96360710,96364591,96366058,96367373,96369063,96369500,96373815	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr5	96934454	96934465	96934454	+	RAMPAGE_only	17	18	29	1.811200	4.323161	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr16	15740077	15740171	15740077	-	RAMPAGE_only	72	72	717	44.780351	7.608124	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.988842
esophagus_muscularis_mucosa_male_adult_37_years	chr6	26474340	26474348	26474340	+	RAMPAGE_only	4	5	9	0.562096	2.725481	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr5	172954206	172954224	172954206	+	High_confidence	7	7	13	0.811917	3.084963	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172954113	172969718	STRG.16208.3	+	172954113,172959864,172968458,172969412	172954336,172960041,172968599,172969718	0.846154
esophagus_muscularis_mucosa_male_adult_37_years	chr21	28048413	28048414	28048413	+	High_confidence	10	10	14	0.874372	3.521641	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048413	28137609	LOC284825|NR_126010.1	+	28048413,28102549,28130529,28135313,28136689	28048537,28102769,28130622,28135708,28137609	0.928571
esophagus_muscularis_mucosa_male_adult_37_years	chr20	50130092	50130118	50130101	-	High_confidence	16	16	70	4.371861	5.137227	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50127395	50130106	STRG.44837.4	-	50127395,50129545,50130051	50128187,50129690,50130106	0.728571
esophagus_muscularis_mucosa_male_adult_37_years	chrX	81262650	81262682	81262676	+	RAMPAGE_only	4	4	16	0.999283	3.250000	chrX	81262192	81262806	LINE|L1|L1MD3	+	chrX	81255493	81297516	SH3BGRL|ENST00000474113.1	+	81255493,81276983,81278330,81297194	81255643,81277169,81278411,81297516	0.937500
esophagus_muscularis_mucosa_male_adult_37_years	chr11	10574400	10574519	10574454	-	RAMPAGE_only	5	5	46	2.872937	3.691993	chr11	10574346	10574533	LINE|L2|L2c	-	chr11	10573090	10652185	MRVI1|ENST00000424001.5	-	10573090,10580454,10581866,10591547,10593491,10594145,10600917,10603119,10604404,10606741,10609727,10623777,10625965,10627715,10627972,10628750,10629537,10631990,10652024	10576575,10580589,10581986,10591612,10593599,10594195,10601059,10603251,10604545,10606772,10609851,10623856,10626583,10627763,10628025,10628828,10629711,10632061,10652185	0.978261
esophagus_muscularis_mucosa_male_adult_37_years	chr8	32927967	32927977	32927967	+	RAMPAGE_only	10	10	31	1.936110	4.413716	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.838710
esophagus_muscularis_mucosa_male_adult_37_years	chr4	79744339	79744341	79744340	-	High_confidence	7	11	15	0.936827	2.840224	chr4	79743637	79744703	LINE|L2|L2a	+	chr4	79702580	79744324	STRG.12543.1	-	79702580,79744218	79702991,79744324	0.533333
esophagus_muscularis_mucosa_male_adult_37_years	chr4	158173056	158173061	158173060	-	High_confidence	5	5	9	0.562096	2.503258	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158124473	158173050	FAM198B|ENST00000585682.5	-	158124473,158130785,158155610,158170465,158172867	158127614,158131012,158155825,158171599,158173050	0.888889
esophagus_muscularis_mucosa_male_adult_37_years	chr17	77127872	77127877	77127876	+	High_confidence	4	4	9	0.562096	2.503258	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr17	49646375	49646409	49646408	-	High_confidence	4	4	19	1.186648	3.681881	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49619045	49646622	STRG.40466.12	-	49619045,49619233,49621945,49622732,49646115	49619108,49619385,49622067,49622876,49646622	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	8	8	8	0.499641	2.750000	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr20	45833293	45833315	45833293	-	High_confidence	14	16	61	3.809765	4.286413	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr9	72363498	72363510	72363498	-	High_confidence	4	4	11	0.687007	3.121928	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.818182
esophagus_muscularis_mucosa_male_adult_37_years	chr19	51795150	51795172	51795171	+	High_confidence	4	4	24	1.498924	4.251629	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.958333
esophagus_muscularis_mucosa_male_adult_37_years	chr3	33142878	33142906	33142878	+	RAMPAGE_only	2	2	8	0.499641	2.521641	chr3	33142664	33142953	SINE|Alu|AluSx	-	chr3	33113978	33147773	CRTAP|ENST00000320954.10	+	33113978,33120343,33124407,33129938,33132554,33134181,33142394	33114548,33120493,33124579,33130067,33132700,33134265,33147773	0.875000
esophagus_muscularis_mucosa_male_adult_37_years	chr18	46087118	46087169	46087118	-	High_confidence	4	4	19	1.186648	3.683542	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.842105
esophagus_muscularis_mucosa_male_adult_37_years	chr7	106285426	106285441	106285426	-	High_confidence	3	3	10	0.624552	2.641604	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106277055	106285612	NAMPT|ENST00000417537.1	-	106277055,106284827,106285540	106277179,106284931,106285612	0.800000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	114759276	114759277	114759276	-	High_confidence	9	9	9	0.562096	2.725481	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.666667
esophagus_muscularis_mucosa_male_adult_37_years	chr11	78532945	78532951	78532945	+	High_confidence	4	5	11	0.687007	3.121928	chr11	78532498	78533068	LTR|ERV1|LTR24C	+	chr11	78533175	78558565	AP003110.1|ENST00000526976.1	+	78533175,78546508,78555214,78558263	78533303,78546640,78555369,78558565	0.727273
esophagus_muscularis_mucosa_male_adult_37_years	chr9	134373102	134373106	134373102	+	High_confidence	8	8	17	1.061738	3.734522	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134372940	134441125	STRG.25691.2	+	134372940,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134373180,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134441125	0.823529
esophagus_muscularis_mucosa_male_adult_37_years	chr15	42415322	42415368	42415322	-	RAMPAGE_only	5	6	22	1.374014	3.884184	chr15	42415122	42415421	SINE|Alu|AluSq2	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	0.909091
esophagus_muscularis_mucosa_male_adult_37_years	chr1	89272819	89272883	89272859	-	High_confidence	14	15	122	7.619530	5.592669	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.959016
esophagus_muscularis_mucosa_male_adult_37_years	chrX	103607488	103607490	103607489	+	High_confidence	5	9	14	0.874372	3.238901	chrX	103607367	103607515	LINE|L2|L2	-	chrX	103607450	103609927	TCEAL3|ENST00000372628.5	+	103607450,103608603,103609042	103607716,103608673,103609927	0.928571
esophagus_muscularis_mucosa_male_adult_37_years	chrX	5726324	5726325	5726324	-	High_confidence	115	117	122	7.619530	4.946486	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.844262
esophagus_muscularis_mucosa_male_adult_37_years	chr2	159428326	159428357	159428356	-	RAMPAGE_only	3	3	9	0.562096	3.000000	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.555556
esophagus_muscularis_mucosa_male_adult_37_years	chr9	122406522	122406567	122406534	+	High_confidence	4	4	23	1.436469	3.914866	chr9	122405232	122406719	LTR|ERV1|LTR12C	-	chr9	122406389	122416886	STRG.25412.1	+	122406389,122415713,122416767	122406780,122415782,122416886	0.826087
esophagus_muscularis_mucosa_male_adult_37_years	chr14	44912628	44912638	44912628	-	High_confidence	16	17	27	1.686289	4.132944	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.851852
esophagus_muscularis_mucosa_male_adult_37_years	chr7	40509494	40509498	40509494	+	RAMPAGE_only	9	9	23	1.436469	4.152391	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.826087
esophagus_muscularis_mucosa_male_adult_37_years	chr4	114364914	114364967	114364914	-	High_confidence	90	90	183	11.429294	4.670315	chr4	114364772	114365325	LTR|ERVL-MaLR|MLT1E3	-	chr4	114334838	114365001	STRG.12965.1	-	114334838,114335128,114364807	114335026,114335244,114365001	0.928962
esophagus_muscularis_mucosa_male_adult_37_years	chr11	123060124	123060256	123060168	-	High_confidence	68	71	341	21.297210	5.489288	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.560117
esophagus_muscularis_mucosa_male_adult_37_years	chr16	75248150	75248151	75248150	-	High_confidence	5	7	8	0.499641	2.521641	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.875000
esophagus_muscularis_mucosa_male_adult_37_years	chr2	229232040	229232054	229232042	-	High_confidence	16	24	50	3.122758	5.094102	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.760000
esophagus_muscularis_mucosa_male_adult_37_years	chr11	65382645	65382670	65382645	-	High_confidence	5	5	10	0.624552	3.169925	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.900000
esophagus_muscularis_mucosa_male_adult_37_years	chr5	78999363	78999373	78999372	-	RAMPAGE_only	4	6	13	0.811917	3.084963	chr5	78999319	78999631	SINE|Alu|AluY	-	chr5	78997605	79069649	DMGDH|ENST00000255189.7	-	78997605,79005272,79024270,79026423,79028432,79029903,79030832,79032686,79033238,79042282,79044303,79051286,79054183,79055809,79063612,79069519	78998297,79005407,79024330,79026581,79028650,79030034,79030998,79032840,79033408,79042481,79044552,79051491,79054348,79055908,79063787,79069649	0.923077
esophagus_muscularis_mucosa_male_adult_37_years	chr7	104940943	104940944	104940943	+	High_confidence	233	235	241	15.051694	5.226066	chr7	104939974	104941430	LTR|ERV1|LTR12C	+	chr7	104941062	104962060	AC007384.1|ENST00000415513.1	+	104941062,104961983	104941670,104962060	0.966805
esophagus_muscularis_mucosa_male_adult_37_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	12	12	12	0.749462	3.251629	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr12	111875	111884	111875	-	High_confidence	5	6	9	0.562096	2.947703	chr12	110820	111833	LTR|ERV1|HERVP71A-int	-	chr12	106523	111850	AC026369.3|ENST00000540226.1	-	106523,111618	106877,111850	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr12	46266488	46266516	46266515	-	High_confidence	15	15	42	2.623117	4.490029	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.904762
esophagus_muscularis_mucosa_male_adult_37_years	chr20	18794054	18794078	18794077	+	High_confidence	16	16	36	2.248386	4.511865	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.972222
esophagus_muscularis_mucosa_male_adult_37_years	chr1	232553338	232553343	232553338	-	RAMPAGE_only	3	3	7	0.437186	2.521641	chr1	232552807	232553528	LTR|ERV1|LTR1F1	-	chr1	232397964	232561558	SIPA1L2|ENST00000366630.5	-	232397964,232402391,232403447,232404124,232415493,232425588,232428410,232432246,232439107,232441290,232441767,232443601,232445528,232460886,232464839,232471370,232479626,232483791,232490873,232493526,232513856,232561468	232399273,232402473,232403571,232404178,232415625,232425808,232428564,232432471,232439496,232441394,232441868,232443685,232445786,232461161,232465416,232471528,232479730,232483966,232491062,232493660,232515608,232561558	0.571429
esophagus_muscularis_mucosa_male_adult_37_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	9	11	11	0.687007	3.277613	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr19	45424367	45424381	45424380	-	High_confidence	3	3	7	0.437186	2.807355	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr15	25346014	25346024	25346023	-	High_confidence	5	5	15	0.936827	3.378783	chr15	25345979	25347018	LINE|L1|L1ME2	+	chr15	25333727	25346031	UBE3A|ENST00000636667.1	-	25333727,25340084,25345979	25339257,25340228,25346031	0.733333
esophagus_muscularis_mucosa_male_adult_37_years	chr16	87860664	87860708	87860676	-	RAMPAGE_only	4	4	17	1.061738	3.250000	chr16	87860400	87860678	LTR|ERV1|MER4B	+	chr16	87830022	87863639	SLC7A5|ENST00000565644.5	-	87830022,87834413,87836497,87837844,87838713,87839701,87840428,87841049,87851723,87863589	87833025,87834591,87836647,87837941,87838817,87839825,87840473,87841155,87851849,87863639	0.882353
esophagus_muscularis_mucosa_male_adult_37_years	chr2	10844329	10844374	10844373	+	RAMPAGE_only	9	9	26	1.623834	4.286790	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10878266	10885118	LOC101929733|NR_110575.1	+	10878266,10884833	10878444,10885118	0.500000
esophagus_muscularis_mucosa_male_adult_37_years	chr17	49646312	49646321	49646312	-	High_confidence	6	6	14	0.874372	3.664498	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.642857
esophagus_muscularis_mucosa_male_adult_37_years	chr12	31959159	31959192	31959178	+	High_confidence	5	5	13	0.811917	3.251629	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31981060	KIAA1551|ENST00000540924.5	+	31959407,31960776,31980877	31959491,31960871,31981060	0.769231
esophagus_muscularis_mucosa_male_adult_37_years	chr9	128185577	128185578	128185577	-	RAMPAGE_only	5	6	7	0.437186	2.807355	chr9	128185400	128185541	SINE|MIR|MIR3	-	chr9	128177587	128180798	CIZ1|ENST00000476239.5	-	128177587,128178368,128178708,128179243,128180414,128180720	128177763,128178490,128178904,128179415,128180523,128180798	0.571429
esophagus_muscularis_mucosa_male_adult_37_years	chr7	11193340	11193367	11193359	+	High_confidence	4	4	15	0.936827	3.456565	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.933333
esophagus_muscularis_mucosa_male_adult_37_years	chr1	184793503	184793568	184793564	-	RAMPAGE_only	9	12	51	3.185213	4.027601	chr1	184793278	184793583	SINE|Alu|AluSz	+	chr1	184791029	184974550	FAM129A|ENST00000367511.3	-	184791029,184798078,184803584,184805945,184808073,184818637,184823166,184823637,184831846,184884632,184890107,184894074,184899178,184974301	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184823742,184831962,184884800,184890222,184894206,184899309,184974550	0.980392
esophagus_muscularis_mucosa_male_adult_37_years	chr5	95793873	95793904	95793903	+	RAMPAGE_only	5	5	11	0.687007	2.921928	chr5	95793796	95793956	DNA|hAT-Tip100|MER45A	+	chr5	95731174	95796367	RHOBTB3|ENST00000379982.7	+	95731174,95731858,95736888,95748332,95752238,95755395,95763507,95768045,95780251,95783796,95788761,95793058	95731684,95732084,95737075,95748487,95752350,95755761,95763620,95768166,95780425,95783963,95788858,95796367	0.909091
esophagus_muscularis_mucosa_male_adult_37_years	chr11	12528372	12528408	12528372	+	RAMPAGE_only	4	4	9	0.562096	2.725481	chr11	12528254	12528421	SINE|MIR|MIRb	-	chr11	12377478	12535356	PARVA|ENST00000649199.1	+	12377478,12473744,12473912,12477846,12496457,12504313,12508583,12511513,12513298,12513996,12517609,12518444,12527848	12377783,12473834,12473983,12477949,12496598,12504429,12508642,12511533,12513360,12514065,12517711,12518517,12535356	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr9	121313980	121314021	121314002	+	RAMPAGE_only	50	51	239	14.926784	5.361795	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr6	3083273	3083281	3083280	+	RAMPAGE_only	4	4	9	0.562096	2.503258	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.888889
esophagus_muscularis_mucosa_male_adult_37_years	chr8	53523885	53523891	53523890	-	High_confidence	5	5	11	0.687007	3.121928	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.909091
esophagus_muscularis_mucosa_male_adult_37_years	chr19	54617142	54617153	54617152	+	High_confidence	3	4	7	0.437186	2.807355	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617156	54632186	STRG.43806.6	+	54617156,54630516,54631025,54631270,54631499,54631934	54617349,54630633,54631107,54631306,54631787,54632186	0.857143
esophagus_muscularis_mucosa_male_adult_37_years	chr5	150640301	150640348	150640347	+	High_confidence	15	15	40	2.498206	4.663231	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.975000
esophagus_muscularis_mucosa_male_adult_37_years	chr11	33706995	33707019	33707018	-	RAMPAGE_only	3	5	12	0.749462	3.251629	chr11	33706918	33707043	SINE|MIR|MIRc	+	chr11	33703009	33722727	CD59|NM_001127225.1	-	33703009,33717369,33722378,33722570	33710343,33717471,33722463,33722727	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr7	102973265	102973266	102973265	-	High_confidence	5	6	8	0.499641	2.521641	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102883571	102973219	FBXL13|ENST00000477915.5	-	102883571,102884213,102913085,102926273,102963532,102968021,102973149	102883685,102884312,102913215,102926374,102963665,102968117,102973219	0.625000
esophagus_muscularis_mucosa_male_adult_37_years	chr14	81427421	81427445	81427444	-	High_confidence	5	6	16	0.999283	3.280639	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr22	18149848	18149869	18149868	+	High_confidence	12	12	21	1.311558	2.815202	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr19	58306095	58306130	58306127	+	High_confidence	2	2	8	0.499641	2.500000	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.625000
esophagus_muscularis_mucosa_male_adult_37_years	chr10	35449714	35449726	35449714	+	RAMPAGE_only	11	11	34	2.123475	4.265320	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.617647
esophagus_muscularis_mucosa_male_adult_37_years	chr19	44914321	44914322	44914321	+	High_confidence	7	7	9	0.562096	2.725481	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.888889
esophagus_muscularis_mucosa_male_adult_37_years	chr6	43013392	43013393	43013392	-	High_confidence	13	13	15	0.936827	3.773557	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr16	55636702	55636703	55636702	+	RAMPAGE_only	18	18	18	1.124193	3.350209	chr16	55636498	55636760	SINE|Alu|AluSz	+	chr16	56632232	56633986	MT1M|ENST00000379818.3	+	56632232,56633339,56633750	56632759,56633405,56633986	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr9	68975842	68975855	68975842	-	High_confidence	12	12	57	3.559944	4.905046	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.526316
esophagus_muscularis_mucosa_male_adult_37_years	chrX	147937542	147937580	147937542	+	RAMPAGE_only	4	4	13	0.811917	2.522055	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.692308
esophagus_muscularis_mucosa_male_adult_37_years	chr7	74744164	74744226	74744164	+	High_confidence	4	4	18	1.124193	3.410417	chr7	74744109	74744261	DNA|hAT-Charlie|MER117	+	chr7	74744343	74749452	GTF2I|ENST00000438130.6	+	74744343,74744757,74745882,74746336,74748014,74749024,74749267	74744508,74744941,74745941,74746411,74748116,74749090,74749452	0.888889
esophagus_muscularis_mucosa_male_adult_37_years	chr20	36890527	36890920	36890642	-	RAMPAGE_only	13	16	174	10.867198	5.741132	chr20	36890464	36890776	SINE|Alu|AluSq2	-	chr20	36890418	36893066	SAMHD1|ENST00000644250.1	-	36890418,36892618	36891794,36893066	0.580460
esophagus_muscularis_mucosa_male_adult_37_years	chr9	128684473	128684480	128684479	-	RAMPAGE_only	4	4	10	0.624552	2.646439	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.500000
esophagus_muscularis_mucosa_male_adult_37_years	chr17	2975656	2975661	2975660	+	RAMPAGE_only	11	12	20	1.249103	4.021928	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2854007	3037727	STRG.39170.1	+	2854007,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2854102,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037727	0.850000
esophagus_muscularis_mucosa_male_adult_37_years	chr1	33021389	33021417	33021416	-	RAMPAGE_only	2	2	9	0.562096	3.000000	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.888889
esophagus_muscularis_mucosa_male_adult_37_years	chr8	38825346	38825366	38825360	+	RAMPAGE_only	4	6	18	1.124193	3.614369	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr4	41359591	41359612	41359591	+	High_confidence	2	2	10	0.624552	2.921928	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	33130033	33130038	33130037	+	RAMPAGE_only	3	3	8	0.499641	2.521641	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	0.875000
esophagus_muscularis_mucosa_male_adult_37_years	chr8	53523839	53523863	53523862	-	High_confidence	5	5	9	0.562096	2.947703	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.777778
esophagus_muscularis_mucosa_male_adult_37_years	chr19	9140393	9140428	9140393	+	High_confidence	56	56	188	11.741570	6.480778	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	STRG.42258.3	+	9140396,9155924,9156611,9157979,9158825,9160113	9140592,9156041,9157394,9158075,9158908,9163408	0.893617
esophagus_muscularis_mucosa_male_adult_37_years	chr20	50267474	50267502	50267501	+	High_confidence	9	11	47	2.935393	4.474357	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267498	50278427	SMIM25|ENST00000445003.5	+	50267498,50277490,50278176	50267663,50277613,50278427	0.723404
esophagus_muscularis_mucosa_male_adult_37_years	chr8	53524064	53524095	53524064	-	High_confidence	4	4	13	0.811917	3.251629	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.846154
esophagus_muscularis_mucosa_male_adult_37_years	chr11	71999607	71999661	71999607	+	High_confidence	5	7	30	1.873655	4.548394	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999600	72002697	IL18BP|ENST00000534583.5	+	71999600,72000350,72001200,72001404,72001783,72002552	72000012,72000557,72001324,72001552,72001948,72002697	0.900000
esophagus_muscularis_mucosa_male_adult_37_years	chr7	134711498	134711504	134711503	+	RAMPAGE_only	15	15	39	2.435751	4.662015	chr7	134711275	134711628	LTR|ERVL|MLT2D	+	chr7	134744251	134968402	CALD1|ENST00000417172.5	+	134744251,134843883,134867692,134928753,134932987,134941091,134947507,134950373,134958068,134958208,134959973,134960532,134965305,134968339	134744363,134843971,134867804,134928900,134933390,134941237,134947769,134950514,134958112,134958290,134960111,134960628,134965386,134968402	0.846154
esophagus_muscularis_mucosa_male_adult_37_years	chr2	45192665	45192666	45192665	-	High_confidence	11	12	14	0.874372	3.180833	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45187169	45192285	LINC01121|ENST00000454673.1	-	45187169,45192139	45189249,45192285	0.785714
esophagus_muscularis_mucosa_male_adult_37_years	chr12	91179456	91179463	91179462	-	High_confidence	24753	25583	36866	2302.471969	7.825521	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.880486
esophagus_muscularis_mucosa_male_adult_37_years	chr2	200889279	200889318	200889293	-	High_confidence	21	21	72	4.496772	5.327853	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.666667
esophagus_muscularis_mucosa_male_adult_37_years	chr6	158631135	158631152	158631135	+	RAMPAGE_only	4	4	13	0.811917	3.251629	chr6	158631108	158631267	SINE|MIR|MIRc	-	chr6	158560082	158635606	STRG.19109.1	+	158560082,158573419,158580939,158583953,158585303,158589671,158605266,158607243,158608332,158608658,158623549,158625103,158625702,158628407,158629729,158631322,158631809	158560232,158573523,158580995,158584044,158585425,158589782,158605347,158607343,158608463,158608750,158623607,158625206,158625754,158628490,158629819,158631389,158635606	0.923077
esophagus_muscularis_mucosa_male_adult_37_years	chr20	37298760	37298761	37298760	+	RAMPAGE_only	13	13	13	0.811917	3.180833	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr2	202565248	202565291	202565248	+	RAMPAGE_only	3	3	17	1.061738	3.852169	chr2	202565124	202565329	LINE|CR1|L3b	-	chr2	202377433	202567751	BMPR2|ENST00000374574.2	+	202377433,202464808,202467518,202513718,202514887,202518821,202520086,202530793,202532584,202542310,202552715,202559695	202377550,202464979,202467689,202513829,202514979,202519052,202520201,202530954,202532732,202542447,202552888,202567751	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr2	182030747	182030784	182030747	+	High_confidence	2	3	11	0.687007	2.721928	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.727273
esophagus_muscularis_mucosa_male_adult_37_years	chr16	53445773	53445781	53445780	+	High_confidence	6	6	10	0.624552	2.721928	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr8	39082977	39083058	39083057	+	RAMPAGE_only	4	4	22	1.374014	3.553763	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.727273
esophagus_muscularis_mucosa_male_adult_37_years	chr19	35115816	35115827	35115816	+	High_confidence	5	5	14	0.874372	3.378783	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_021910.2	+	35115827,35116263,35119167,35119362,35121077,35121221,35122764,35123270,35123440	35115959,35116359,35119251,35119416,35121110,35121245,35122954,35123308,35124324	0.928571
esophagus_muscularis_mucosa_male_adult_37_years	chr7	101217580	101217599	101217594	-	High_confidence	7	7	20	1.249103	4.142664	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.950000
esophagus_muscularis_mucosa_male_adult_37_years	chr6	127330836	127330873	127330836	-	High_confidence	2	2	9	0.562096	2.725481	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr10	65570510	65570529	65570517	+	High_confidence	4	5	21	1.311558	4.392317	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.666667
esophagus_muscularis_mucosa_male_adult_37_years	chrX	53546446	53546496	53546460	-	RAMPAGE_only	3	4	10	0.624552	2.846439	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.800000
esophagus_muscularis_mucosa_male_adult_37_years	chr1	153967486	153967504	153967503	+	High_confidence	5	5	18	1.124193	3.503258	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.666667
esophagus_muscularis_mucosa_male_adult_37_years	chr6	79631273	79631329	79631328	+	High_confidence	61	65	200	12.491032	6.099588	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.980000
esophagus_muscularis_mucosa_male_adult_37_years	chr20	17573071	17573090	17573071	+	RAMPAGE_only	29	29	54	3.372579	4.864252	chr20	17572958	17573157	LTR|ERV1|MER92D	-	chr20	17570089	17607222	DSTN|ENST00000449141.2	+	17570089,17600737,17604554,17605109,17607036	17570211,17601045,17604631,17605211,17607222	0.814815
esophagus_muscularis_mucosa_male_adult_37_years	chr8	22392851	22392887	22392883	+	High_confidence	19	19	48	2.997848	5.115847	chr8	22392932	22392982	LINE|L2|L2b	+	chr8	22392829	22404870	SLC39A14|ENST00000520832.1	+	22392829,22404695	22393232,22404870	0.666667
esophagus_muscularis_mucosa_male_adult_37_years	chr13	113187444	113187492	113187444	-	High_confidence	2	2	12	0.749462	2.918296	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.833333
esophagus_muscularis_mucosa_male_adult_37_years	chr7	55538663	55538689	55538663	-	High_confidence	7	8	20	1.249103	2.563865	chr7	55538614	55538881	LINE|L1|L1ME4b	+	chr7	55471967	55538660	VOPP1|ENST00000625836.2	-	55471967,55492281,55497612,55521071,55538612	55473045,55492418,55497690,55521130,55538660	0.950000
esophagus_muscularis_mucosa_male_adult_37_years	chr18	9117556	9117606	9117605	+	RAMPAGE_only	4	4	23	1.436469	4.201841	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	0.826087
esophagus_muscularis_mucosa_male_adult_37_years	chr7	11194708	11194727	11194708	+	RAMPAGE_only	17	19	35	2.185931	4.016687	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.857143
esophagus_muscularis_mucosa_male_adult_37_years	chr19	5680233	5680241	5680240	-	High_confidence	3	3	7	0.437186	2.584963	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.714286
esophagus_muscularis_mucosa_male_adult_37_years	chr11	60182444	60182445	60182444	-	High_confidence	4	4	7	0.437186	2.521641	chr11	60182383	60182456	SINE|MIR|MIRb	-	chr11	60172019	60183030	STRG.28659.3	-	60172019,60173027,60175401,60178259,60179830,60181580,60182977	60172253,60173129,60175611,60178316,60179965,60181741,60183030	0.714286
esophagus_muscularis_mucosa_male_adult_37_years	chr19	47780076	47780108	47780106	+	High_confidence	7	12	19	1.186648	3.572431	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.894737
esophagus_muscularis_mucosa_male_adult_37_years	chr1	97904654	97904676	97904654	-	RAMPAGE_only	9	11	29	1.811200	4.494680	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.517241
esophagus_muscularis_mucosa_male_adult_37_years	chr3	151539265	151539316	151539265	-	RAMPAGE_only	4	4	15	0.936827	3.235926	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.666667
esophagus_muscularis_mucosa_male_adult_37_years	chr12	95381141	95381243	95381141	-	High_confidence	21	21	97	6.058151	5.581355	chr12	95380967	95381176	DNA|hAT-Charlie|MER102a	+	chr12	95368021	95381235	STRG.32318.2	-	95368021,95380726,95381211	95377369,95380958,95381235	0.845361
esophagus_muscularis_mucosa_male_adult_37_years	chr18	46087022	46087066	46087065	-	High_confidence	3	3	14	0.874372	3.238901	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.785714
esophagus_muscularis_mucosa_male_adult_37_years	chr20	44714452	44714470	44714469	+	High_confidence	11	11	23	1.436469	3.697846	chr20	44714278	44714680	LINE|L2|L2b	+	chr20	44714843	44727812	WISP2|NM_001323370.1	+	44714843,44715365,44719896,44724737,44727086	44715161,44715450,44720113,44724992,44727812	0.913043
esophagus_muscularis_mucosa_male_adult_37_years	chr11	64226142	64226180	64226158	-	High_confidence	108	115	524	32.726504	6.824478	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.958015
esophagus_muscularis_mucosa_male_adult_37_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	14	15	15	0.936827	3.521641	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	0.933333
esophagus_muscularis_mucosa_male_adult_37_years	chr7	90154183	90154206	90154183	+	High_confidence	6	6	11	0.687007	3.459432	chr7	90154032	90154206	DNA|hAT-Charlie|MER5A	+	chr7	90154374	90164827	STEAP1|ENST00000297205.6	+	90154374,90159757,90160804,90161913,90164476	90154543,90159872,90161317,90162078,90164827	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	33864067	33864095	33864070	+	RAMPAGE_only	2	2	10	0.624552	2.725481	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.900000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	13	13	13	0.811917	2.623517	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr6	56492856	56492870	56492856	-	High_confidence	5	5	10	0.624552	3.121928	chr6	56492590	56492886	SINE|Alu|AluSx1	+	chr6	56483528	56492243	DST|ENST00000487754.2	-	56483528,56487103,56489489,56492226	56485471,56487273,56489609,56492243	0.700000
esophagus_muscularis_mucosa_male_adult_37_years	chr9	129489101	129489141	129489125	+	High_confidence	11	17	52	3.247668	5.142371	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129503573	STRG.25583.3	+	129489106,129493418,129502396,129503322	129489299,129493595,129503139,129503573	0.903846
esophagus_muscularis_mucosa_male_adult_37_years	chr22	42721262	42721282	42721262	-	High_confidence	5	5	17	1.061738	3.381580	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.941176
esophagus_muscularis_mucosa_male_adult_37_years	chr8	53523953	53523997	53523963	-	High_confidence	5	5	20	1.249103	3.821928	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.950000
esophagus_muscularis_mucosa_male_adult_37_years	chr1	116390265	116390308	116390265	+	RAMPAGE_only	4	4	29	1.811200	3.853863	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr12	8681599	8681600	8681599	+	High_confidence	5	5	8	0.499641	2.807355	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.625000
esophagus_muscularis_mucosa_male_adult_37_years	chr1	91569498	91569527	91569508	-	High_confidence	5	6	16	0.999283	3.577820	chr1	91569350	91569473	SINE|MIR|MIRb	-	chr1	91500578	91569620	STRG.1887.1	-	91500578,91516399,91518532,91539186,91569412	91501795,91516511,91518675,91539246,91569620	0.562500
esophagus_muscularis_mucosa_male_adult_37_years	chr12	46186093	46186101	46186100	-	RAMPAGE_only	3	3	9	0.562096	2.947703	chr12	46185953	46186190	DNA|TcMar-Tigger|Tigger16b	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr8	144106351	144106394	144106351	+	High_confidence	3	3	12	0.749462	3.084963	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.750000
esophagus_muscularis_mucosa_male_adult_37_years	chr17	47067498	47067518	47067498	-	High_confidence	169	188	640	39.971303	5.722707	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.923438
esophagus_muscularis_mucosa_male_adult_37_years	chr8	85378112	85378113	85378112	-	High_confidence	134	143	143	8.931088	4.031261	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.986014
esophagus_muscularis_mucosa_male_adult_37_years	chr15	89041221	89041228	89041227	+	RAMPAGE_only	5	6	9	0.562096	2.500000	chr15	89040910	89041343	LTR|ERVL-MaLR|MLT1H2	+	chr15	89088149	89202360	ABHD2|NM_007011.7	+	89088149,89090282,89102499,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89202360	0.555556
esophagus_muscularis_mucosa_male_adult_37_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	7	7	7	0.437186	2.807355	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr12	103777154	103777646	103777288	-	RAMPAGE_only	17	20	443	27.667636	4.230205	chr12	103777216	103777295	DNA|TcMar-Tigger|Tigger19b	+	chr12	103772302	103841197	NT5DC3|NM_001031701.2	-	103772302,103780299,103785334,103787440,103788837,103793163,103793409,103793936,103796893,103798586,103806321,103806854,103814936,103840948	103778081,103780364,103785475,103787527,103788919,103793265,103793512,103793997,103797031,103798677,103806377,103806929,103815121,103841197	0.990971
esophagus_muscularis_mucosa_male_adult_37_years	chr1	183590910	183590935	183590910	-	High_confidence	4	5	15	0.936827	3.189898	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr5	14653390	14653391	14653390	-	High_confidence	64	65	65	4.059585	4.186278	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.984615
esophagus_muscularis_mucosa_male_adult_37_years	chrX	5726115	5726129	5726116	-	High_confidence	14	19	41	2.560662	4.125071	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5718766	5726217	STRG.46966.1	-	5718766,5725929	5719872,5726217	0.926829
esophagus_muscularis_mucosa_male_adult_37_years	chr3	3782620	3782640	3782639	-	RAMPAGE_only	2	2	8	0.499641	2.521641	chr3	3782417	3783018	LTR|ERVL|MLT2A2	-	chr3	3777694	3795460	STRG.8356.2	-	3777694,3779240,3782502,3788913,3795295	3777803,3779322,3782701,3789074,3795460	0.625000
esophagus_muscularis_mucosa_male_adult_37_years	chr17	15475693	15475733	15475727	-	High_confidence	8	8	25	1.561379	4.213661	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15437858	15475728	CDRT4|ENST00000520956.2	-	15437858,15475600	15438200,15475728	0.560000
esophagus_muscularis_mucosa_male_adult_37_years	chr15	88635654	88635661	88635654	+	High_confidence	11	12	26	1.623834	4.286790	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.923077
esophagus_muscularis_mucosa_male_adult_37_years	chr1	1655409	1655449	1655444	-	RAMPAGE_only	9	11	28	1.748745	4.494680	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.750000
esophagus_muscularis_mucosa_male_adult_37_years	chr18	36122236	36122243	36122242	-	High_confidence	3	3	8	0.499641	2.521641	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.875000
esophagus_muscularis_mucosa_male_adult_37_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	10	10	10	0.624552	3.121928	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888512	77933384	NEXN|ENST00000401035.7	+	77888512,77916054,77917959,77918124,77925187,77926413,77926715,77929315,77933281	77888759,77916133,77918038,77918273,77925229,77926611,77926892,77929504,77933384	0.900000
esophagus_muscularis_mucosa_male_adult_37_years	chr14	73567616	73567641	73567616	+	High_confidence	19	20	49	3.060303	4.871115	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.959184
esophagus_muscularis_mucosa_male_adult_37_years	chr16	4355592	4355593	4355592	-	High_confidence	129	129	129	8.056716	5.203077	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.945736
esophagus_muscularis_mucosa_male_adult_37_years	chr2	240022172	240022173	240022172	-	RAMPAGE_only	12	12	17	1.061738	3.175123	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr16	27333283	27333288	27333283	+	RAMPAGE_only	30	37	66	4.122041	5.285840	chr16	27333168	27333399	LINE|CR1|L3	-	chr16	27341288	27364777	IL4R|ENST00000170630.6	+	27341288,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27364777	0.772727
esophagus_muscularis_mucosa_male_adult_37_years	chr22	39021146	39021182	39021181	+	High_confidence	2	3	7	0.437186	2.807355	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr7	158863388	158863401	158863388	+	RAMPAGE_only	2	3	8	0.499641	2.807355	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158857622	158884981	STRG.21739.5	+	158857622,158869854,158871141,158876608,158879683,158884563,158884906	158857664,158869908,158871562,158876691,158879989,158884619,158884981	0.875000
esophagus_muscularis_mucosa_male_adult_37_years	chr11	108224068	108224075	108224074	+	High_confidence	4	4	9	0.562096	3.169925	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr4	141332616	141332617	141332616	-	High_confidence	26	26	26	1.623834	3.825252	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.961538
esophagus_muscularis_mucosa_male_adult_37_years	chr1	6208681	6208682	6208681	-	High_confidence	114	114	114	7.119888	3.496881	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.982456
esophagus_muscularis_mucosa_male_adult_37_years	chrX	48683361	48683363	48683362	+	High_confidence	41	65	65	4.059585	4.697124	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.938462
esophagus_muscularis_mucosa_male_adult_37_years	chr3	112603135	112603163	112603162	-	RAMPAGE_only	4	4	8	0.499641	2.500000	chr3	112601964	112603244	DNA|TcMar-Tigger|Tigger1	+	chr3	112596793	112641269	CCDC80|ENST00000206423.7	-	112596793,112607175,112609977,112616709,112618967,112630112,112638027,112640326	112605763,112607256,112610081,112616858,112619104,112630269,112639916,112641269	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr2	113117956	113117976	113117970	+	High_confidence	15	18	36	2.248386	4.760067	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.916667
esophagus_muscularis_mucosa_male_adult_37_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	24	24	50	3.122758	4.125042	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.980000
esophagus_muscularis_mucosa_male_adult_37_years	chr19	3062922	3062983	3062922	-	High_confidence	59	75	335	20.922479	6.272821	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.976119
esophagus_muscularis_mucosa_male_adult_37_years	chr1	202551781	202551791	202551787	+	RAMPAGE_only	5	7	15	0.936827	3.664498	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.533333
esophagus_muscularis_mucosa_male_adult_37_years	chr1	203488198	203488233	203488198	+	RAMPAGE_only	3	4	12	0.749462	3.084963	chr1	203488187	203488233	SINE|MIR|MIR3	+	chr1	203475827	203491352	PRELP|ENST00000343110.2	+	203475827,203483168,203486705	203475938,203484157,203491352	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr1	12409848	12409855	12409854	+	RAMPAGE_only	8	8	17	1.061738	3.499228	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.941176
esophagus_muscularis_mucosa_male_adult_37_years	chr8	143281669	143281687	143281686	-	High_confidence	61	66	217	13.552770	4.372034	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.894009
esophagus_muscularis_mucosa_male_adult_37_years	chr2	217937115	217937162	217937135	-	High_confidence	9	9	36	2.248386	4.550293	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.555556
esophagus_muscularis_mucosa_male_adult_37_years	chr1	51403428	51403453	51403432	-	RAMPAGE_only	6	7	25	1.561379	3.740953	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.880000
esophagus_muscularis_mucosa_male_adult_37_years	chr9	129488726	129488857	129488856	+	High_confidence	58	58	345	21.547031	5.534620	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.959420
esophagus_muscularis_mucosa_male_adult_37_years	chr19	1134593	1134612	1134593	-	RAMPAGE_only	3	3	10	0.624552	3.121928	chr19	1134434	1134765	LINE|L1|L1MB7	+	chr19	1107633	1132274	SBNO2|NM_001100122.1	-	1107633,1108778,1109134,1109291,1109505,1109682,1110744,1111018,1111505,1111995,1112188,1112401,1112817,1113534,1114230,1116020,1116828,1117322,1119010,1119515,1119905,1122138,1122467,1122657,1122893,1123533,1123941,1127603,1132089	1108704,1108969,1109211,1109423,1109598,1109777,1110888,1111093,1111614,1112067,1112301,1112537,1112949,1113704,1114422,1116103,1116926,1117499,1119164,1119621,1120023,1122282,1122558,1122791,1123045,1123639,1124022,1127765,1132274	0.700000
esophagus_muscularis_mucosa_male_adult_37_years	chr4	158173024	158173025	158173024	-	High_confidence	77	84	89	5.558509	5.165757	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.865169
esophagus_muscularis_mucosa_male_adult_37_years	chr12	104030726	104030727	104030726	+	High_confidence	26	27	38	2.373296	4.871178	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.815789
esophagus_muscularis_mucosa_male_adult_37_years	chr1	12572782	12572799	12572782	-	RAMPAGE_only	1	1	7	0.437186	2.584963	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.857143
esophagus_muscularis_mucosa_male_adult_37_years	chr6	36505070	36505091	36505090	-	RAMPAGE_only	6	6	12	0.749462	3.584963	chr6	36505057	36505226	DNA|hAT-Charlie|MER5B	+	chr6	36493891	36547454	STRG.17288.2	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540204,36547454	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr9	89479889	89479890	89479889	-	High_confidence	39	39	40	2.498206	4.284901	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89402924	89479890	SEMA4D|ENST00000540475.5	-	89402924,89405350,89455887,89479571	89403016,89405699,89455953,89479890	0.975000
esophagus_muscularis_mucosa_male_adult_37_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	8	9	12	0.749462	3.188722	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.916667
esophagus_muscularis_mucosa_male_adult_37_years	chr2	241843099	241843150	241843149	+	High_confidence	3	3	12	0.749462	3.251629	chr2	241842855	241843211	LINE|L1|L1MB3	-	chr2	241843270	241843673	STRG.8240.1	+	241843270	241843673	0.500000
esophagus_muscularis_mucosa_male_adult_37_years	chr3	45034830	45034869	45034868	+	RAMPAGE_only	5	5	17	1.061738	3.454822	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr11	310015	310068	310044	+	High_confidence	4	4	20	1.249103	3.826875	chr11	309444	310164	LTR|ERV1|LTR30	-	chr11	309838	315272	STRG.27873.4	+	309838,313996,314921	310171,314356,315272	0.950000
esophagus_muscularis_mucosa_male_adult_37_years	chr8	141417165	141417199	141417165	+	High_confidence	2	2	14	0.874372	3.521641	chr8	141417197	141417374	SINE|MIR|MIR	+	chr8	141417737	141431294	STRG.23550.6	+	141417737,141421387,141425047,141426938,141430926	141418018,141422345,141425140,141427069,141431294	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr14	73463624	73463625	73463624	-	High_confidence	16	16	23	1.436469	3.970573	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73284253	73463625	STRG.35165.3	-	73284253,73287109,73292733,73297210,73323129,73355625,73366896,73409936,73462528,73463474	73284374,73287314,73292874,73297285,73323204,73355766,73366981,73410068,73462689,73463625	0.739130
esophagus_muscularis_mucosa_male_adult_37_years	chrX	103577211	103577212	103577211	+	High_confidence	14	19	19	1.186648	3.826875	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr6	10521487	10521526	10521525	+	High_confidence	4	4	13	0.811917	3.022055	chr6	10521558	10521623	LINE|L2|L2a	+	chr6	10521484	10621422	GCNT2|ENST00000474518.1	+	10521484,10527473,10528630,10621350	10521594,10527660,10528841,10621422	0.846154
esophagus_muscularis_mucosa_male_adult_37_years	chr1	84202622	84202643	84202631	+	RAMPAGE_only	2	2	8	0.499641	2.807355	chr1	84202308	84202638	LINE|CR1|L3b	-	chr1	84181659	84238494	PRKACB|ENST00000610457.1	+	84181659,84182199,84184036,84185099,84196615,84197728,84202682,84214152,84235179	84181728,84182328,84184135,84185182,84196742,84197824,84202805,84214317,84238494	0.875000
esophagus_muscularis_mucosa_male_adult_37_years	chr5	151182193	151182231	151182193	-	RAMPAGE_only	4	4	11	0.687007	2.646439	chr5	151182086	151182249	SINE|MIR|MIRc	+	chr5	151181234	151185215	CCDC69|ENST00000519448.1	-	151181234,151184343	151183614,151185215	0.818182
esophagus_muscularis_mucosa_male_adult_37_years	chr16	2757779	2757802	2757801	+	High_confidence	3	3	11	0.687007	3.277613	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr12	110440313	110440314	110440313	-	RAMPAGE_only	6	7	8	0.499641	2.521641	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.875000
esophagus_muscularis_mucosa_male_adult_37_years	chr20	56367491	56367519	56367491	+	RAMPAGE_only	5	7	14	0.874372	3.392747	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	0.928571
esophagus_muscularis_mucosa_male_adult_37_years	chr2	201790489	201790517	201790506	+	High_confidence	17	17	52	3.247668	4.924199	chr2	201790433	201790802	LINE|L2|L2-3_Crp	-	chr2	201790471	201807938	CDK15|ENST00000493754.5	+	201790471,201806428,201807493,201807852	201790660,201806547,201807643,201807938	0.500000
esophagus_muscularis_mucosa_male_adult_37_years	chr2	3536845	3536885	3536845	-	High_confidence	3	4	18	1.124193	3.969816	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.777778
esophagus_muscularis_mucosa_male_adult_37_years	chr9	98943539	98943578	98943575	+	High_confidence	25	26	65	4.059585	5.519455	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.984615
esophagus_muscularis_mucosa_male_adult_37_years	chr20	44696111	44696112	44696111	-	High_confidence	29	29	30	1.873655	4.556088	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.666667
esophagus_muscularis_mucosa_male_adult_37_years	chr20	3795750	3795789	3795750	+	High_confidence	24	24	89	5.558509	5.449274	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.988764
esophagus_muscularis_mucosa_male_adult_37_years	chr6	108960797	108960828	108960797	+	RAMPAGE_only	3	4	16	0.999283	3.625000	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108959459	108965117	ARMC2|ENST00000481850.1	+	108959459,108961571,108962013,108964179,108964979	108959519,108961694,108962127,108964312,108965117	0.750000
esophagus_muscularis_mucosa_male_adult_37_years	chr11	108923712	108923737	108923712	+	RAMPAGE_only	4	5	11	0.687007	2.913977	chr11	108923524	108923886	LINE|L2|L2c	-	chr11	108929518	108940925	DDX10|ENST00000534221.1	+	108929518,108940245	108929708,108940925	1.000000
esophagus_muscularis_mucosa_male_adult_37_years	chr1	168137436	168137459	168137436	-	High_confidence	3	3	15	0.936827	3.378783	chr1	168137391	168137473	LINE|L2|L2b	-	chr1	168085277	168137573	STRG.3103.2	-	168085277,168087584,168090563,168096507,168104476,168114455,168134905,168137164	168085796,168087704,168090668,168097232,168104894,168114549,168135036,168137573	0.933333
esophagus_muscularis_mucosa_male_adult_37_years	chr12	93773410	93773412	93773411	+	RAMPAGE_only	12	16	19	1.186648	3.683542	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.526316
esophagus_muscularis_mucosa_male_adult_54_years	chr11	3380960	3380961	3380960	+	High_confidence	29	29	29	2.307591	4.116265	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.862069
esophagus_muscularis_mucosa_male_adult_54_years	chr15	65642885	65642907	65642906	+	High_confidence	3	3	8	0.636577	2.521641	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	0.875000
esophagus_muscularis_mucosa_male_adult_54_years	chr7	30923970	30924025	30923970	+	RAMPAGE_only	10	11	23	1.830158	3.969002	chr7	30923921	30924027	DNA|hAT-Tip100|MamTip2	+	chr7	30921503	30925516	AQP1|NM_001185062.1	+	30921503,30922065,30922563,30923449	30921624,30922230,30922644,30925516	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr11	119046588	119046598	119046588	-	RAMPAGE_only	3	3	7	0.557005	2.521641	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr1	21833817	21833850	21833822	-	High_confidence	3	3	14	1.114009	2.931209	chr1	21833729	21833783	LINE|L2|L2c	-	chr1	21829992	21833577	HSPG2|ENST00000635682.1	-	21829992,21830981,21831214,21831462,21831651,21832494,21832874,21833267,21833466	21830091,21831090,21831324,21831562,21831796,21832606,21832892,21833384,21833577	0.928571
esophagus_muscularis_mucosa_male_adult_54_years	chr10	79446833	79446869	79446868	-	RAMPAGE_only	7	7	19	1.511870	3.176110	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.947368
esophagus_muscularis_mucosa_male_adult_54_years	chr11	65431703	65431723	65431703	+	RAMPAGE_only	3	3	7	0.557005	2.584963	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.857143
esophagus_muscularis_mucosa_male_adult_54_years	chr16	15838799	15838805	15838799	-	RAMPAGE_only	6	6	11	0.875293	2.732159	chr16	15838577	15838884	SINE|Alu|AluSz	+	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.818182
esophagus_muscularis_mucosa_male_adult_54_years	chr5	65722915	65722919	65722918	-	High_confidence	3	3	7	0.557005	2.521641	chr5	65722781	65722883	DNA|hAT-Ac|OldhAT1	-	chr5	65680687	65723035	SGTB|ENST00000506816.1	-	65680687,65685367,65704278,65708488,65712960,65720707,65722756	65680794,65685472,65704378,65708558,65713064,65720829,65723035	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr2	219425186	219425187	219425186	+	RAMPAGE_only	8	8	10	0.795721	3.169925	chr2	219424901	219425196	SINE|Alu|AluSg	-	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	0.900000
esophagus_muscularis_mucosa_male_adult_54_years	chr1	202582642	202582675	202582674	+	RAMPAGE_only	2	2	8	0.636577	2.521641	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.875000
esophagus_muscularis_mucosa_male_adult_54_years	chr15	92914938	92914956	92914950	+	High_confidence	3	3	11	0.875293	2.646439	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.636364
esophagus_muscularis_mucosa_male_adult_54_years	chr9	127531649	127531672	127531671	-	RAMPAGE_only	3	5	11	0.875293	3.121928	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	0.909091
esophagus_muscularis_mucosa_male_adult_54_years	chr1	212792444	212792471	212792444	-	High_confidence	4	4	14	1.114009	3.093069	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.928571
esophagus_muscularis_mucosa_male_adult_54_years	chr4	79258869	79258870	79258869	+	High_confidence	9	10	13	1.034437	2.719295	chr4	79257987	79259677	LTR|ERV1|MER52A	+	chr4	79258780	79308654	LINC01088|ENST00000511241.5	+	79258780,79306690,79308272	79259039,79306728,79308654	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr2	217937115	217937162	217937161	-	High_confidence	22	26	67	5.331331	4.780707	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.567164
esophagus_muscularis_mucosa_male_adult_54_years	chr17	4143196	4143215	4143199	+	High_confidence	47	51	114	9.071220	5.225375	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.982456
esophagus_muscularis_mucosa_male_adult_54_years	chr10	95493258	95493265	95493264	-	RAMPAGE_only	3	5	9	0.716149	2.500000	chr10	95493013	95493319	SINE|Alu|AluSg	+	chr10	95414743	95482671	SORBS1|ENST00000492542.1	-	95414743,95421960,95432447,95437489,95441125,95482433	95414862,95422073,95432576,95437555,95441180,95482671	0.777778
esophagus_muscularis_mucosa_male_adult_54_years	chr7	158740231	158740281	158740280	-	RAMPAGE_only	23	23	95	7.559350	5.636835	chr7	158740209	158740388	LTR|ERV1|MER49	+	chr7	158733612	158744217	ESYT2|ENST00000435514.3	-	158733612,158734421,158735502,158737047,158739022,158741522,158743528	158734252,158734471,158735608,158737179,158739121,158741896,158744217	0.673684
esophagus_muscularis_mucosa_male_adult_54_years	chr16	8842153	8842160	8842153	+	High_confidence	18	18	28	2.228019	3.258355	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.892857
esophagus_muscularis_mucosa_male_adult_54_years	chr18	13283908	13283931	13283930	-	RAMPAGE_only	3	3	8	0.636577	2.500000	chr18	13283773	13284115	LTR|ERVL-MaLR|THE1A	-	chr18	13280340	13280769	STRG.83015.1	-	13280340	13280769	0.625000
esophagus_muscularis_mucosa_male_adult_54_years	chr17	42403419	42403959	42403661	-	RAMPAGE_only	38	38	323	25.701790	6.820802	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	0.993808
esophagus_muscularis_mucosa_male_adult_54_years	chr16	30354641	30354664	30354653	-	High_confidence	4	4	14	1.114009	3.026987	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.928571
esophagus_muscularis_mucosa_male_adult_54_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	15	15	15	1.193582	3.189898	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr17	56904437	56904446	56904437	-	High_confidence	5	7	12	0.954865	3.022055	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.666667
esophagus_muscularis_mucosa_male_adult_54_years	chrX	16712889	16712933	16712889	-	High_confidence	6	6	15	1.193582	3.373557	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr12	57138574	57138581	57138574	+	RAMPAGE_only	5	5	9	0.716149	2.725481	chr12	57138607	57138694	DNA|TcMar-Tigger|Tigger19b	+	chr12	57128908	57155593	LRP1|ENST00000554174.1	+	57128908,57138458,57141373,57143678,57144971,57145226,57154207,57154478	57129031,57138581,57141511,57143798,57145100,57145490,57154370,57155593	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr7	100349884	100349885	100349884	+	RAMPAGE_only	12	12	12	0.954865	3.022055	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336242	100353692	STRG.44932.7	+	100336242,100338178,100338772,100345864,100349716,100351251,100352563,100353209,100353372	100336337,100338264,100338889,100345968,100349887,100352478,100353123,100353270,100353692	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr18	46087042	46087070	46087042	-	High_confidence	4	4	20	1.591442	3.646439	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.800000
esophagus_muscularis_mucosa_male_adult_54_years	chr14	95516119	95516123	95516120	+	High_confidence	4	7	15	1.193582	3.373557	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.933333
esophagus_muscularis_mucosa_male_adult_54_years	chr1	95042501	95042515	95042501	-	RAMPAGE_only	2	2	6	0.477433	2.584963	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.500000
esophagus_muscularis_mucosa_male_adult_54_years	chr1	6208681	6208682	6208681	-	High_confidence	219	219	219	17.426291	4.234413	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.972603
esophagus_muscularis_mucosa_male_adult_54_years	chr14	102083105	102083126	102083105	-	RAMPAGE_only	4	4	12	0.954865	2.751629	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr1	168137436	168137470	168137436	-	High_confidence	4	4	16	1.273154	3.373557	chr1	168137391	168137473	LINE|L2|L2b	-	chr1	168085277	168137573	STRG.5750.1	-	168085277,168087584,168090563,168096507,168104476,168114455,168134905,168137164	168085796,168087704,168090668,168097232,168104894,168114549,168135036,168137573	0.687500
esophagus_muscularis_mucosa_male_adult_54_years	chr2	8783155	8783166	8783160	-	RAMPAGE_only	3	3	10	0.795721	2.947703	chr2	8782911	8783214	SINE|Alu|AluSq	+	chr2	8725559	8802971	KIDINS220|ENST00000496383.5	-	8725559,8726886,8733443,8734654,8736867,8750111,8751465,8770669,8776747,8778638,8778895,8779673,8785740,8786205,8788646,8789879,8791059,8793809,8796770,8798201,8800399,8802929	8725599,8726943,8733680,8734753,8736999,8750335,8751644,8770832,8776892,8778727,8779139,8779814,8786030,8786357,8788812,8790059,8791224,8793987,8796869,8798300,8800498,8802971	0.700000
esophagus_muscularis_mucosa_male_adult_54_years	chrX	5726193	5726194	5726193	-	High_confidence	18	18	22	1.750586	3.984184	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.681818
esophagus_muscularis_mucosa_male_adult_54_years	chr13	30376953	30376958	30376953	-	High_confidence	4	5	9	0.716149	2.500000	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30374002	30376964	LINC00426|ENST00000416261.1	-	30374002,30375466,30376826	30374093,30375776,30376964	0.666667
esophagus_muscularis_mucosa_male_adult_54_years	chrX	20204049	20204050	20204049	-	RAMPAGE_only	8	8	9	0.716149	2.500000	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.888889
esophagus_muscularis_mucosa_male_adult_54_years	chr9	125337374	125337375	125337374	+	RAMPAGE_only	5	6	8	0.636577	2.521641	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125261793	125341864	GAPVD1|ENST00000497580.5	+	125261793,125298889,125301982,125305062,125307412,125307690,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176	125261959,125299106,125302826,125305149,125307547,125307880,125312612,125321562,125323923,125326589,125330218,125332017,125332629,125337095,125337591,125341864	0.625000
esophagus_muscularis_mucosa_male_adult_54_years	chr19	48868595	48868617	48868613	-	High_confidence	121	139	602	47.902408	7.129053	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.985050
esophagus_muscularis_mucosa_male_adult_54_years	chr6	26474340	26474346	26474345	+	RAMPAGE_only	10	10	23	1.830158	3.762267	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.956522
esophagus_muscularis_mucosa_male_adult_54_years	chr20	17573071	17573092	17573071	+	RAMPAGE_only	6	6	18	1.432298	3.947703	chr20	17572958	17573157	LTR|ERV1|MER92D	-	chr20	17570089	17607222	DSTN|ENST00000449141.2	+	17570089,17600737,17604554,17605109,17607036	17570211,17601045,17604631,17605211,17607222	0.888889
esophagus_muscularis_mucosa_male_adult_54_years	chrX	103577211	103577212	103577211	+	High_confidence	18	23	23	1.830158	3.882045	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr1	153967486	153967498	153967486	+	High_confidence	17	17	29	2.307591	3.978334	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.724138
esophagus_muscularis_mucosa_male_adult_54_years	chr20	44696111	44696112	44696111	-	High_confidence	38	39	45	3.580745	4.401947	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.777778
esophagus_muscularis_mucosa_male_adult_54_years	chr13	93455168	93455206	93455182	+	RAMPAGE_only	5	5	22	1.750586	3.327340	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.909091
esophagus_muscularis_mucosa_male_adult_54_years	chr7	11193339	11193367	11193366	+	High_confidence	6	9	27	2.148447	3.587859	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.666667
esophagus_muscularis_mucosa_male_adult_54_years	chr2	11201309	11201353	11201309	-	RAMPAGE_only	4	4	16	1.273154	3.375000	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr16	2205850	2205855	2205854	+	High_confidence	5	5	9	0.716149	2.500000	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.888889
esophagus_muscularis_mucosa_male_adult_54_years	chr20	38985968	38985986	38985968	+	RAMPAGE_only	7	7	24	1.909731	3.653997	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.916667
esophagus_muscularis_mucosa_male_adult_54_years	chr19	51795150	51795184	51795183	+	High_confidence	3	3	11	0.875293	2.846439	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.909091
esophagus_muscularis_mucosa_male_adult_54_years	chr13	27445105	27445106	27445105	-	RAMPAGE_only	4	4	7	0.557005	2.807355	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr6	118651538	118651593	118651563	-	High_confidence	24	24	144	11.458383	5.867410	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.993056
esophagus_muscularis_mucosa_male_adult_54_years	chr5	140700445	140700452	140700445	+	High_confidence	476	560	969	77.105370	4.635261	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.982456
esophagus_muscularis_mucosa_male_adult_54_years	chr8	144106357	144106369	144106357	+	High_confidence	5	6	16	1.273154	3.452820	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.500000
esophagus_muscularis_mucosa_male_adult_54_years	chr1	1655409	1655422	1655409	-	RAMPAGE_only	14	15	25	1.989303	4.334963	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.600000
esophagus_muscularis_mucosa_male_adult_54_years	chr10	95437800	95437816	95437815	-	RAMPAGE_only	32	32	56	4.456038	4.986188	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.750000
esophagus_muscularis_mucosa_male_adult_54_years	chrY	3002893	3002905	3002893	+	High_confidence	13	13	35	2.785024	4.477025	chrY	3002436	3002992	LTR|ERV1|LTR4	+	chrY	3002911	3097217	LINC00278|ENST00000444263.5	+	3002911,3079283,3096994	3003217,3079341,3097217	0.657143
esophagus_muscularis_mucosa_male_adult_54_years	chr3	28347646	28347654	28347646	-	High_confidence	3	3	7	0.557005	2.584963	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.571429
esophagus_muscularis_mucosa_male_adult_54_years	chrX	5726324	5726325	5726324	-	High_confidence	38	40	50	3.978605	4.510300	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.860000
esophagus_muscularis_mucosa_male_adult_54_years	chr8	32927956	32927977	32927976	+	RAMPAGE_only	6	6	12	0.954865	3.251629	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.583333
esophagus_muscularis_mucosa_male_adult_54_years	chr4	158173024	158173025	158173024	-	High_confidence	61	61	75	5.967908	5.239358	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.920000
esophagus_muscularis_mucosa_male_adult_54_years	chrX	48683362	48683363	48683362	+	High_confidence	13	19	19	1.511870	3.536887	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683360	48686946	STRG.93826.1	+	48683360,48683819,48684282,48685546,48685733,48685945,48686080,48686780	48683363,48683985,48684423,48685633,48685836,48685987,48686134,48686946	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr22	44181149	44181184	44181183	+	High_confidence	7	7	16	1.273154	3.000000	chr22	44181132	44181213	LINE|L2|L2a	-	chr22	44181335	44206622	PARVG|ENST00000475485.6	+	44181335,44181741,44183317,44185807,44186576,44189113,44190550,44192048,44196156,44196346,44198620,44205756,44206316	44181370,44181917,44183408,44185872,44187878,44189254,44190666,44192129,44196213,44196415,44198722,44205829,44206622	0.937500
esophagus_muscularis_mucosa_male_adult_54_years	chr16	4355592	4355593	4355592	-	High_confidence	64	64	65	5.172187	4.859070	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.815385
esophagus_muscularis_mucosa_male_adult_54_years	chr7	158863400	158863410	158863400	+	RAMPAGE_only	8	11	26	2.068875	4.243856	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.923077
esophagus_muscularis_mucosa_male_adult_54_years	chr6	140898421	140898430	140898429	-	RAMPAGE_only	7	7	21	1.671014	4.021928	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140852924	AL035446.1|ENST00000455011.1	-	140845957,140852818	140846304,140852924	0.619048
esophagus_muscularis_mucosa_male_adult_54_years	chr20	3795750	3795783	3795750	+	High_confidence	15	17	48	3.819461	4.809492	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.958333
esophagus_muscularis_mucosa_male_adult_54_years	chr12	46266486	46266516	46266488	-	High_confidence	9	13	20	1.591442	3.241446	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.700000
esophagus_muscularis_mucosa_male_adult_54_years	chr10	71615171	71615197	71615196	+	RAMPAGE_only	10	10	21	1.671014	3.684184	chr10	71614899	71615319	DNA|hAT-Charlie|MER113	-	chr10	71570794	71716872	CDH23|ENST00000466757.8	+	71570794,71577913,71615503,71617204,71635237,71643860,71645830,71646458,71675111,71677455,71679386,71682444,71687646,71690467,71694146,71695417,71702021,71702548,71704910,71706896,71709097,71712664,71715201	71570918,71577992,71615616,71617393,71635297,71643866,71645980,71646617,71675176,71677693,71679492,71682572,71687719,71690584,71694259,71695525,71702211,71702694,71705130,71707049,71709211,71712813,71716872	0.809524
esophagus_muscularis_mucosa_male_adult_54_years	chr7	134711498	134711504	134711498	+	RAMPAGE_only	7	8	14	1.114009	3.664498	chr7	134711275	134711628	LTR|ERVL|MLT2D	+	chr7	134744251	134968402	CALD1|ENST00000417172.5	+	134744251,134843883,134867692,134928753,134932987,134941091,134947507,134950373,134958068,134958208,134959973,134960532,134965305,134968339	134744363,134843971,134867804,134928900,134933390,134941237,134947769,134950514,134958112,134958290,134960111,134960628,134965386,134968402	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr1	202551736	202551798	202551736	+	RAMPAGE_only	14	16	86	6.843201	5.455349	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.534884
esophagus_muscularis_mucosa_male_adult_54_years	chr18	23965561	23965587	23965583	+	High_confidence	10	15	44	3.501173	4.214114	chr18	23965348	23965836	LINE|L2|L2	-	chr18	23965571	24133027	STRG.83186.1	+	23965571,23966031,23966864,23967963,24064139,24066011,24069156,24080584,24082912,24114553,24118124,24123833,24125426,24128885,24130312,24131881,24132484	23965612,23966146,23966925,23968041,24064188,24066140,24069271,24080939,24083081,24114647,24118232,24123943,24125550,24128983,24130417,24131920,24133027	0.727273
esophagus_muscularis_mucosa_male_adult_54_years	chr16	15862843	15862854	15862853	-	RAMPAGE_only	5	5	11	0.875293	2.521928	chr16	15862762	15863014	LINE|L1|L1MC2	+	chr16	15703786	15857033	MYH11|ENST00000576790.6	-	15703786,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15786732,15798687,15823411,15838269,15857033	0.909091
esophagus_muscularis_mucosa_male_adult_54_years	chr9	121281850	121281852	121281850	+	RAMPAGE_only	7	11	15	1.193582	3.373557	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.733333
esophagus_muscularis_mucosa_male_adult_54_years	chr5	151687199	151687245	151687244	-	High_confidence	4	4	16	1.273154	3.640224	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.937500
esophagus_muscularis_mucosa_male_adult_54_years	chr6	77369144	77369167	77369144	-	RAMPAGE_only	7	7	22	1.750586	4.004886	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77151165	77316844	STRG.38442.1	-	77151165,77151818,77271339,77273026,77316635	77151280,77151974,77271493,77273307,77316844	0.500000
esophagus_muscularis_mucosa_male_adult_54_years	chr21	44962753	44962767	44962764	+	RAMPAGE_only	4	4	13	1.034437	3.026987	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44959135	44976973	STRG.91035.4	+	44959135,44960099,44967033,44973196,44976679	44959253,44960168,44967181,44973265,44976973	0.923077
esophagus_muscularis_mucosa_male_adult_54_years	chr20	45833293	45833313	45833309	-	High_confidence	7	16	43	3.421601	3.902078	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.930233
esophagus_muscularis_mucosa_male_adult_54_years	chr2	10844241	10844267	10844266	+	High_confidence	10	10	46	3.660317	4.261842	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844234	10885840	STRG.9086.3	+	10844234,10884833	10844505,10885840	0.586957
esophagus_muscularis_mucosa_male_adult_54_years	chr14	73567616	73567641	73567616	+	High_confidence	104	104	218	17.346719	5.786260	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.954128
esophagus_muscularis_mucosa_male_adult_54_years	chr8	53523862	53523891	53523862	-	High_confidence	12	13	36	2.864596	4.318868	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.972222
esophagus_muscularis_mucosa_male_adult_54_years	chr4	185620116	185620126	185620125	-	RAMPAGE_only	5	6	14	1.114009	2.753434	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr8	61578141	61578142	61578141	+	High_confidence	206	208	214	17.028431	5.773623	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.971963
esophagus_muscularis_mucosa_male_adult_54_years	chrX	5726234	5726242	5726241	-	High_confidence	4	5	11	0.875293	3.459432	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.636364
esophagus_muscularis_mucosa_male_adult_54_years	chr14	32402135	32402136	32402135	+	RAMPAGE_only	12	12	12	0.954865	3.251629	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32433163	32439032	AKAP6|ENST00000554449.1	+	32433163,32438673	32433817,32439032	0.750000
esophagus_muscularis_mucosa_male_adult_54_years	chr10	63594821	63594826	63594825	+	RAMPAGE_only	12	12	19	1.511870	3.471354	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	0.947368
esophagus_muscularis_mucosa_male_adult_54_years	chr10	65570512	65570536	65570512	+	High_confidence	5	5	27	2.148447	4.243856	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570501	65585801	LINC01515|ENST00000599409.5	+	65570501,65571424,65572934,65585484,65585664	65570759,65571579,65573056,65585567,65585801	0.703704
esophagus_muscularis_mucosa_male_adult_54_years	chr17	43508424	43508443	43508424	+	RAMPAGE_only	4	4	10	0.795721	2.646439	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr1	192529545	192529555	192529554	+	High_confidence	5	5	11	0.875293	3.121928	chr1	192528890	192530203	LINE|L2|L2a	-	chr1	192529581	192530918	STRG.6512.1	+	192529581,192530306	192529715,192530918	0.909091
esophagus_muscularis_mucosa_male_adult_54_years	chr9	84368698	84368727	84368726	-	High_confidence	4	4	14	1.114009	2.842371	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84368458	84368719	STRG.52831.1	-	84368458	84368719	0.642857
esophagus_muscularis_mucosa_male_adult_54_years	chr17	49646471	49646510	49646471	-	High_confidence	28	30	160	12.731537	4.748317	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49600278	49646622	STRG.81467.1	-	49600278,49601864,49607249,49607873,49611279,49611418,49618980,49619233,49621945,49622732,49636758,49646115	49600522,49602007,49607372,49607929,49611310,49611457,49619108,49619385,49622067,49622876,49636809,49646622	0.968750
esophagus_muscularis_mucosa_male_adult_54_years	chr7	134432360	134432379	134432378	-	High_confidence	6	7	12	0.954865	2.751629	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.750000
esophagus_muscularis_mucosa_male_adult_54_years	chr16	27286199	27286234	27286233	+	High_confidence	7	7	22	1.750586	3.788755	chr16	27285896	27286308	LTR|ERVL-MaLR|MLT1G	-	chr16	27286656	27290492	FLJ21408|ENST00000566535.1	+	27286656,27290244	27286744,27290492	0.590909
esophagus_muscularis_mucosa_male_adult_54_years	chr9	129489063	129489126	129489108	+	High_confidence	5	6	32	2.546307	4.103728	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.875000
esophagus_muscularis_mucosa_male_adult_54_years	chrX	53546444	53546445	53546444	-	High_confidence	7	7	9	0.716149	2.500000	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53539656	53546903	STRG.94055.11	-	53539656,53542442,53543840,53544559,53545028,53546435	53539812,53542539,53543968,53544762,53545161,53546903	0.777778
esophagus_muscularis_mucosa_male_adult_54_years	chr2	227164620	227164621	227164620	+	High_confidence	31	31	40	3.182884	4.733870	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164634	227293413	STRG.16212.2	+	227164634,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293413	0.575000
esophagus_muscularis_mucosa_male_adult_54_years	chr5	150118764	150118789	150118764	-	RAMPAGE_only	3	3	8	0.636577	2.521641	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.875000
esophagus_muscularis_mucosa_male_adult_54_years	chr4	152412488	152412529	152412528	-	High_confidence	6	6	20	1.591442	3.784184	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr19	3062922	3062983	3062982	-	High_confidence	31	33	164	13.049825	5.453055	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.981707
esophagus_muscularis_mucosa_male_adult_54_years	chr9	68975845	68975855	68975845	-	High_confidence	10	10	31	2.466735	4.389365	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.645161
esophagus_muscularis_mucosa_male_adult_54_years	chr3	134485470	134485501	134485470	-	High_confidence	3	3	11	0.875293	3.095795	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.636364
esophagus_muscularis_mucosa_male_adult_54_years	chr9	35659606	35659629	35659628	+	RAMPAGE_only	11	12	19	1.511870	3.826875	chr9	35659216	35659848	LINE|CR1|L3	+	chr9	35658316	35661403	CCDC107|ENST00000421582.2	+	35658316,35658575,35660400	35658485,35658727,35661403	0.684211
esophagus_muscularis_mucosa_male_adult_54_years	chr17	15475727	15475733	15475732	-	High_confidence	14	16	25	1.989303	3.863465	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15437858	15475728	CDRT4|ENST00000520956.2	-	15437858,15475600	15438200,15475728	0.640000
esophagus_muscularis_mucosa_male_adult_54_years	chr2	198253786	198253787	198253786	+	RAMPAGE_only	6	6	9	0.716149	2.750000	chr2	198253767	198253887	LTR|ERVL-MaLR|THE1B	+	chr2	198346828	198572581	PLCL1|ENST00000472193.1	+	198346828,198355294,198387852,198571353,198571855	198346907,198355407,198388005,198571477,198572581	0.666667
esophagus_muscularis_mucosa_male_adult_54_years	chr6	79631256	79631329	79631302	+	High_confidence	71	71	279	22.200618	6.165338	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.978495
esophagus_muscularis_mucosa_male_adult_54_years	chr5	109383420	109383465	109383446	-	High_confidence	6	6	28	2.228019	3.880456	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.964286
esophagus_muscularis_mucosa_male_adult_54_years	chr7	107580245	107580267	107580245	+	High_confidence	694	704	2958	235.374289	6.650198	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.950642
esophagus_muscularis_mucosa_male_adult_54_years	chr6	2881285	2881286	2881285	-	High_confidence	6	6	6	0.477433	2.584963	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr12	643627	643636	643635	-	High_confidence	19	19	65	5.172187	4.712362	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.938462
esophagus_muscularis_mucosa_male_adult_54_years	chr6	31587251	31587275	31587258	+	High_confidence	11	11	28	2.228019	3.583617	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	0.964286
esophagus_muscularis_mucosa_male_adult_54_years	chr8	116648828	116648851	116648847	-	RAMPAGE_only	6	6	19	1.511870	3.366091	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr12	7502497	7502544	7502522	-	High_confidence	5	5	37	2.944168	4.386426	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.945946
esophagus_muscularis_mucosa_male_adult_54_years	chr16	11587459	11587469	11587465	-	High_confidence	5	5	15	1.193582	2.872906	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr11	77175226	77175303	77175302	+	High_confidence	18	18	74	5.888336	5.042010	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175284	77190818	STRG.61088.2	+	77175284,77177548,77179044,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696	77175464,77177643,77179129,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190818	0.851351
esophagus_muscularis_mucosa_male_adult_54_years	chr4	141332616	141332617	141332616	-	High_confidence	65	66	70	5.570047	4.059900	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.957143
esophagus_muscularis_mucosa_male_adult_54_years	chr15	63056580	63056606	63056580	+	High_confidence	2	2	7	0.557005	2.584963	chr15	63056384	63056694	SINE|Alu|AluY	+	chr15	63056860	63059962	TPM1|ENST00000558400.1	+	63056860,63059562	63057118,63059962	0.571429
esophagus_muscularis_mucosa_male_adult_54_years	chr15	94099345	94099353	94099345	-	RAMPAGE_only	2	2	6	0.477433	2.584963	chr15	94099050	94099714	LINE|L1|L1M4a2	+	chr15	94064368	94070820	LINC01579|ENST00000555772.1	-	94064368,94066768,94070523	94065292,94066879,94070820	0.666667
esophagus_muscularis_mucosa_male_adult_54_years	chr10	32446970	32446978	32446977	+	High_confidence	4	4	9	0.716149	2.725481	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr18	34709342	34709374	34709342	+	High_confidence	10	10	47	3.739889	5.155549	chr18	34709150	34709395	LINE|L2|L2c	-	chr18	34710231	34868812	DTNA|NM_001198941.1	+	34710231,34755975,34765960,34794036,34806218,34811958,34815908,34818163,34820790,34827592,34848295,34851830,34858284,34863965,34866110	34710445,34756043,34766041,34794250,34806304,34812113,34816014,34818330,34820915,34827676,34848383,34851928,34858398,34864062,34868812	0.723404
esophagus_muscularis_mucosa_male_adult_54_years	chr3	33838228	33838257	33838256	+	RAMPAGE_only	4	4	8	0.636577	2.750000	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.625000
esophagus_muscularis_mucosa_male_adult_54_years	chr8	16186271	16186272	16186271	-	High_confidence	8	9	12	0.954865	2.594907	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.916667
esophagus_muscularis_mucosa_male_adult_54_years	chr17	77127869	77127873	77127872	+	High_confidence	11	11	19	1.511870	3.386637	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127887	77128154	STRG.82186.1	+	77127887	77128154	0.736842
esophagus_muscularis_mucosa_male_adult_54_years	chr11	100715407	100715442	100715407	+	RAMPAGE_only	8	8	16	1.273154	3.373557	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.562500
esophagus_muscularis_mucosa_male_adult_54_years	chr19	39485770	39485794	39485793	+	High_confidence	6	6	10	0.795721	2.947703	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	0.800000
esophagus_muscularis_mucosa_male_adult_54_years	chr17	59620043	59620064	59620043	+	High_confidence	5	7	20	1.591442	3.984184	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.900000
esophagus_muscularis_mucosa_male_adult_54_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	10	12	12	0.954865	2.751629	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.916667
esophagus_muscularis_mucosa_male_adult_54_years	chr16	15740077	15740182	15740077	-	RAMPAGE_only	315	317	1045	83.152851	7.706039	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.986603
esophagus_muscularis_mucosa_male_adult_54_years	chr18	46087105	46087140	46087105	-	High_confidence	2	2	9	0.716149	2.725481	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.888889
esophagus_muscularis_mucosa_male_adult_54_years	chr6	43013388	43013393	43013392	-	High_confidence	4	4	8	0.636577	3.000000	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr17	49646400	49646409	49646408	-	High_confidence	4	4	11	0.875293	2.646439	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.909091
esophagus_muscularis_mucosa_male_adult_54_years	chr4	118835953	118835954	118835953	-	High_confidence	10	10	10	0.795721	2.921928	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.900000
esophagus_muscularis_mucosa_male_adult_54_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	34	34	34	2.705452	4.182907	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr9	111284841	111284875	111284874	-	High_confidence	12	12	21	1.671014	3.748995	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.857143
esophagus_muscularis_mucosa_male_adult_54_years	chr2	48529375	48529386	48529375	+	High_confidence	17	17	32	2.546307	4.491729	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	0.843750
esophagus_muscularis_mucosa_male_adult_54_years	chr12	110440313	110440320	110440319	-	RAMPAGE_only	6	6	10	0.795721	2.725481	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.900000
esophagus_muscularis_mucosa_male_adult_54_years	chr8	116950234	116950235	116950234	+	High_confidence	6	6	9	0.716149	2.750000	chr8	116948944	116950299	LTR|ERV1|LTR12C	-	chr8	116950948	117147011	SLC30A8|ENST00000521035.5	+	116950948,117006990,117135231,117146818,117146953	116951119,117007113,117135398,117146848,117147011	0.555556
esophagus_muscularis_mucosa_male_adult_54_years	chr5	96934454	96934465	96934464	+	High_confidence	5	5	13	1.034437	2.792481	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.923077
esophagus_muscularis_mucosa_male_adult_54_years	chr7	6044577	6044616	6044577	-	RAMPAGE_only	2	2	11	0.875293	2.663533	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6041152	6046437	EIF2AK1|ENST00000470168.1	-	6041152,6042932,6044561,6046070	6041219,6042993,6044661,6046437	0.727273
esophagus_muscularis_mucosa_male_adult_54_years	chrX	49190851	49190873	49190851	-	RAMPAGE_only	3	3	8	0.636577	2.500000	chrX	49190482	49190814	SINE|Alu|AluJb	-	chrX	49190541	49200199	SYP|ENST00000479808.5	-	49190541,49193271,49194165,49197714,49198967,49200150	49191763,49193463,49194361,49197839,49199033,49200199	0.500000
esophagus_muscularis_mucosa_male_adult_54_years	chr21	34512192	34512219	34512218	-	High_confidence	3	5	13	1.034437	3.251629	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.923077
esophagus_muscularis_mucosa_male_adult_54_years	chr4	2867814	2867851	2867814	+	High_confidence	3	3	11	0.875293	3.121928	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.909091
esophagus_muscularis_mucosa_male_adult_54_years	chr20	18794077	18794086	18794077	+	High_confidence	26	26	70	5.570047	4.045413	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.985714
esophagus_muscularis_mucosa_male_adult_54_years	chr10	95493189	95493200	95493189	-	RAMPAGE_only	3	3	7	0.557005	2.521641	chr10	95493013	95493319	SINE|Alu|AluSg	+	chr10	95414743	95482671	SORBS1|ENST00000492542.1	-	95414743,95421960,95432447,95437489,95441125,95482433	95414862,95422073,95432576,95437555,95441180,95482671	0.714286
esophagus_muscularis_mucosa_male_adult_54_years	chr16	29154303	29154316	29154315	+	High_confidence	7	7	12	0.954865	3.084963	chr16	29154014	29154324	LINE|L1|L1MD2	+	chr16	29153963	29154844	STRG.78000.1	+	29153963	29154844	0.916667
esophagus_muscularis_mucosa_male_adult_54_years	chr3	73520961	73520997	73520961	+	High_confidence	2	2	12	0.954865	3.251629	chr3	73520782	73520990	LINE|L2|L2	-	chr3	73520977	73575811	STRG.19769.1	+	73520977,73569194,73575258	73521643,73569318,73575811	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr19	36850351	36850377	36850376	+	High_confidence	4	4	19	1.511870	3.836592	chr19	36850362	36850429	LTR|ERV1|MER67D	-	chr19	36850360	36879572	ZNF345|ENST00000589046.1	+	36850360,36851727,36876784	36850515,36851904,36879572	0.684211
esophagus_muscularis_mucosa_male_adult_54_years	chr2	187529370	187529376	187529370	-	RAMPAGE_only	3	3	8	0.636577	2.521641	chr2	187529293	187529670	LTR|ERVL-MaLR|MLT1B	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.875000
esophagus_muscularis_mucosa_male_adult_54_years	chr2	218287266	218287280	218287279	-	High_confidence	6	6	18	1.432298	3.725481	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.888889
esophagus_muscularis_mucosa_male_adult_54_years	chr6	3083267	3083294	3083267	+	RAMPAGE_only	2	2	8	0.636577	2.500000	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3077394	3115146	STRG.35666.3	+	3077394,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3077666,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115146	0.875000
esophagus_muscularis_mucosa_male_adult_54_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	8	8	8	0.636577	3.000000	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr21	45563114	45563153	45563152	-	High_confidence	3	3	10	0.795721	2.725481	chr21	45562422	45564060	LINE|L1|L1MC3	+	chr21	45530804	45563122	STRG.91086.1	-	45530804,45531388,45537770,45562741	45530971,45532148,45538008,45563122	0.900000
esophagus_muscularis_mucosa_male_adult_54_years	chr2	29114158	29114177	29114163	+	High_confidence	4	6	25	1.989303	3.509275	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.960000
esophagus_muscularis_mucosa_male_adult_54_years	chr14	35294432	35294446	35294432	+	RAMPAGE_only	2	2	7	0.557005	2.807355	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr5	85647813	85647823	85647822	-	High_confidence	8	8	16	1.273154	3.189898	chr5	85647706	85648160	LTR|ERV1|LTR71A	-	chr5	85633417	85647811	STRG.31756.1	-	85633417,85635203,85647484	85633429,85635252,85647811	0.812500
esophagus_muscularis_mucosa_male_adult_54_years	chr1	51403418	51403469	51403447	-	RAMPAGE_only	5	6	29	2.307591	3.495575	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.931034
esophagus_muscularis_mucosa_male_adult_54_years	chr10	89888929	89888964	89888929	+	RAMPAGE_only	2	2	8	0.636577	2.500000	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.500000
esophagus_muscularis_mucosa_male_adult_54_years	chr1	19344359	19344389	19344388	-	RAMPAGE_only	5	5	20	1.591442	3.892407	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.950000
esophagus_muscularis_mucosa_male_adult_54_years	chr19	11196112	11196223	11196126	-	High_confidence	13	13	112	8.912076	5.476331	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.991071
esophagus_muscularis_mucosa_male_adult_54_years	chr20	44532569	44532570	44532569	+	High_confidence	20	20	25	1.989303	4.183465	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531915	44619037	STRG.88831.6	+	44531915,44582584,44589796,44614533,44618284	44532688,44582731,44589866,44614707,44619037	0.880000
esophagus_muscularis_mucosa_male_adult_54_years	chr17	47067498	47067518	47067498	-	High_confidence	247	270	886	70.500886	5.969589	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.945824
esophagus_muscularis_mucosa_male_adult_54_years	chr13	60410080	60410081	60410080	+	RAMPAGE_only	12	12	12	0.954865	2.688722	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60397830	60573864	TDRD3|ENST00000648252.1	+	60397830,60400255,60402717,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573615	60398631,60400292,60402815,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573864	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr1	176162936	176162953	176162936	-	RAMPAGE_only	4	4	8	0.636577	2.807355	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	176116645	176206440	COP1|ENST00000491600.5	-	176116645,176135009,176136487,176149005,176162868,176163814,176168664,176175909,176184632,176206348	176116681,176135086,176136547,176149074,176162988,176163891,176168748,176176007,176184692,176206440	0.625000
esophagus_muscularis_mucosa_male_adult_54_years	chr6	31587007	31587010	31587009	+	High_confidence	8	17	22	1.750586	3.921928	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.727273
esophagus_muscularis_mucosa_male_adult_54_years	chr5	70401437	70401470	70401444	+	High_confidence	7	10	33	2.625879	3.983196	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70401468	70447526	STRG.31207.2	+	70401468,70414923,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70401668,70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr10	45000503	45000523	45000522	+	High_confidence	3	5	11	0.875293	2.913977	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr1	89272867	89272887	89272867	-	High_confidence	7	7	37	2.944168	4.087568	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.972973
esophagus_muscularis_mucosa_male_adult_54_years	chr7	55463753	55463766	55463765	-	RAMPAGE_only	4	4	10	0.795721	2.725481	chr7	55462917	55465186	LINE|L1|L1MA4A	-	chr7	55461616	55466502	STRG.43618.1	-	55461616	55466502	0.800000
esophagus_muscularis_mucosa_male_adult_54_years	chr9	20658312	20658349	20658348	+	High_confidence	5	5	18	1.432298	3.381580	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658350	20694520	STRG.51412.1	+	20658350,20694519	20658826,20694520	0.888889
esophagus_muscularis_mucosa_male_adult_54_years	chr3	188885437	188885551	188885497	+	RAMPAGE_only	33	34	163	12.970253	5.608840	chr3	188885494	188885956	LINE|L1|L1PA3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.987730
esophagus_muscularis_mucosa_male_adult_54_years	chr20	50130092	50130118	50130101	-	High_confidence	9	10	46	3.660317	4.850570	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50130130	STRG.89016.10	-	50123769,50127974,50129545,50130051	50125179,50128187,50129690,50130130	0.934783
esophagus_muscularis_mucosa_male_adult_54_years	chr2	201115973	201116024	201116023	+	High_confidence	7	10	26	2.068875	3.893661	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.961538
esophagus_muscularis_mucosa_male_adult_54_years	chr9	39810057	39810077	39810057	-	High_confidence	2	2	13	1.034437	3.251629	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807380	39810058	GLIDR|ENST00000618092.2	-	39807380,39809730	39809633,39810058	0.615385
esophagus_muscularis_mucosa_male_adult_54_years	chrY	3002802	3002822	3002802	-	High_confidence	3	3	7	0.557005	2.584963	chrY	3002436	3002992	LTR|ERV1|LTR4	+	chrY	2966843	3002626	ZFY-AS1|ENST00000417305.1	-	2966843,2981837,3002312	2966939,2981927,3002626	0.571429
esophagus_muscularis_mucosa_male_adult_54_years	chr11	64807592	64807613	64807612	-	RAMPAGE_only	5	6	10	0.795721	2.521928	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64804333	64810132	MEN1|ENST00000377313.5	-	64804333,64805033,64805634,64806231,64807010,64807178,64807551,64807890,64809649	64804816,64805198,64805770,64806368,64807098,64807219,64807680,64808099,64810132	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr4	114364914	114364967	114364914	-	High_confidence	209	209	577	45.913105	4.827918	chr4	114364772	114365325	LTR|ERVL-MaLR|MLT1E3	-	chr4	114334800	114364961	STRG.27533.2	-	114334800,114364807	114335244,114364961	0.972270
esophagus_muscularis_mucosa_male_adult_54_years	chr5	157384882	157384904	157384887	-	High_confidence	7	7	24	1.909731	4.053509	chr5	157384657	157384963	SINE|Alu|AluSx1	+	chr5	157375740	157384939	AC008676.1|ENST00000508443.1	-	157375740,157384212	157376945,157384939	0.583333
esophagus_muscularis_mucosa_male_adult_54_years	chr1	42959019	42959078	42959077	+	High_confidence	13	14	57	4.535610	4.161690	chr1	42959103	42959181	SINE|MIR|MIR3	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr19	51688373	51688388	51688387	+	RAMPAGE_only	6	6	11	0.875293	2.721928	chr19	51688154	51688544	LINE|L2|L2c	+	chr19	51689433	51705190	SPACA6|NM_001316994.1	+	51689433,51694477,51701657,51702628,51703020,51703227,51704029,51704269,51705089	51689582,51694555,51701726,51702652,51703098,51703337,51704186,51704480,51705190	0.545455
esophagus_muscularis_mucosa_male_adult_54_years	chr13	49495740	49495744	49495743	+	High_confidence	4	4	8	0.636577	2.521641	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495664	49518060	PHF11|ENST00000481509.5	+	49495664,49513058,49518017	49496095,49513166,49518060	0.750000
esophagus_muscularis_mucosa_male_adult_54_years	chr2	48479481	48479482	48479481	+	High_confidence	25	27	31	2.466735	4.502583	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48478810	48515385	STRG.10625.5	+	48478810,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515385	0.935484
esophagus_muscularis_mucosa_male_adult_54_years	chr16	20674497	20674498	20674497	+	High_confidence	16	16	17	1.352726	3.327820	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.941176
esophagus_muscularis_mucosa_male_adult_54_years	chr4	79584648	79584657	79584648	+	High_confidence	8	8	24	1.909731	3.855389	chr4	79584547	79584699	SINE|5S-Deu-L2|AmnSINE1	+	chr4	79585145	79586576	STRG.26401.1	+	79585145	79586576	0.958333
esophagus_muscularis_mucosa_male_adult_54_years	chr20	50267474	50267494	50267477	+	High_confidence	4	4	22	1.750586	3.499228	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.954545
esophagus_muscularis_mucosa_male_adult_54_years	chr9	39809836	39809859	39809858	-	High_confidence	6	8	15	1.193582	2.842371	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.800000
esophagus_muscularis_mucosa_male_adult_54_years	chr15	25346006	25346026	25346023	-	High_confidence	6	6	23	1.830158	3.820889	chr15	25345979	25347018	LINE|L1|L1ME2	+	chr15	25333727	25346031	UBE3A|ENST00000636667.1	-	25333727,25340084,25345979	25339257,25340228,25346031	0.913043
esophagus_muscularis_mucosa_male_adult_54_years	chr21	28048411	28048414	28048413	+	High_confidence	8	11	14	1.114009	2.950212	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048413	28137609	LOC284825|NR_126010.1	+	28048413,28102549,28130529,28135313,28136689	28048537,28102769,28130622,28135708,28137609	0.928571
esophagus_muscularis_mucosa_male_adult_54_years	chr11	58578102	58578138	58578132	-	High_confidence	13	19	56	4.456038	4.905046	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.642857
esophagus_muscularis_mucosa_male_adult_54_years	chr12	9065161	9065174	9065173	+	High_confidence	11	11	31	2.466735	4.513153	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.645161
esophagus_muscularis_mucosa_male_adult_54_years	chr3	135965670	135965749	135965723	+	High_confidence	21	28	153	12.174532	5.800584	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.967320
esophagus_muscularis_mucosa_male_adult_54_years	chr1	192986893	192986934	192986920	-	RAMPAGE_only	3	3	9	0.716149	2.750000	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192957113	192957861	STRG.6564.1	-	192957113	192957861	0.777778
esophagus_muscularis_mucosa_male_adult_54_years	chr5	172958875	172958919	172958918	+	High_confidence	9	13	31	2.466735	3.831402	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.903226
esophagus_muscularis_mucosa_male_adult_54_years	chr12	47753940	47753954	47753940	+	High_confidence	5	5	11	0.875293	2.721928	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47753929	47756485	SLC48A1|ENST00000552003.1	+	47753929,47755701	47754027,47756485	0.545455
esophagus_muscularis_mucosa_male_adult_54_years	chr6	28335913	28335916	28335915	-	High_confidence	3	5	8	0.636577	2.750000	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.875000
esophagus_muscularis_mucosa_male_adult_54_years	chr12	91179456	91179463	91179462	-	High_confidence	11133	11459	17813	1417.417920	7.519365	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.924493
esophagus_muscularis_mucosa_male_adult_54_years	chr3	45034820	45034841	45034840	+	RAMPAGE_only	3	4	11	0.875293	2.721928	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	0.909091
esophagus_muscularis_mucosa_male_adult_54_years	chr17	2975627	2975661	2975660	+	High_confidence	3	6	11	0.875293	2.646439	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975610	3037651	STRG.79394.2	+	2975610,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2975775,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037651	0.909091
esophagus_muscularis_mucosa_male_adult_54_years	chr11	117817474	117817506	117817474	-	High_confidence	4	4	28	2.228019	4.132944	chr11	117817399	117817493	DNA|hAT-Charlie|MER5B	+	chr11	117776808	117817525	DSCAML1|ENST00000525836.1	-	117776808,117780492,117817389	117776937,117780810,117817525	0.607143
esophagus_muscularis_mucosa_male_adult_54_years	chr2	217937254	217937255	217937254	-	High_confidence	8	8	11	0.875293	2.921928	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.909091
esophagus_muscularis_mucosa_male_adult_54_years	chr2	201790506	201790520	201790506	+	RAMPAGE_only	12	12	31	2.466735	4.260333	chr2	201790433	201790802	LINE|L2|L2-3_Crp	-	chr2	201806578	201895550	CDK15|ENST00000450471.6	+	201806578,201807493,201807857,201812482,201822808,201823664,201833847,201835642,201847380,201854873,201872277,201880027,201890802,201893300	201806787,201807643,201807952,201812562,201822903,201823727,201833971,201835763,201847474,201854937,201872326,201880167,201890927,201895550	0.548387
esophagus_muscularis_mucosa_male_adult_54_years	chr9	92536674	92536704	92536703	-	High_confidence	5	6	12	0.954865	3.084963	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr4	79086177	79086180	79086177	+	High_confidence	10	10	18	1.432298	3.419382	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.888889
esophagus_muscularis_mucosa_male_adult_54_years	chr7	134432435	134432451	134432435	-	High_confidence	6	6	11	0.875293	3.121928	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.818182
esophagus_muscularis_mucosa_male_adult_54_years	chr8	53523953	53523977	53523963	-	High_confidence	15	15	37	2.944168	4.023661	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr13	98988460	98988461	98988460	-	RAMPAGE_only	8	8	8	0.636577	2.500000	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98793486	98978084	DOCK9|NM_001130048.1	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,98977783	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,98978084	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr6	77369106	77369118	77369106	-	RAMPAGE_only	5	5	9	0.716149	2.750000	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77151165	77316844	STRG.38442.1	-	77151165,77151818,77271339,77273026,77316635	77151280,77151974,77271493,77273307,77316844	0.777778
esophagus_muscularis_mucosa_male_adult_54_years	chr17	19386345	19386433	19386345	-	High_confidence	5	5	33	2.625879	4.150159	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr1	78620056	78620058	78620057	+	High_confidence	6	11	11	0.875293	3.277613	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.909091
esophagus_muscularis_mucosa_male_adult_54_years	chr2	229232042	229232054	229232053	-	High_confidence	27	28	52	4.137750	4.950064	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.673077
esophagus_muscularis_mucosa_male_adult_54_years	chr14	81170378	81170414	81170402	-	High_confidence	7	8	21	1.671014	3.681881	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.761905
esophagus_muscularis_mucosa_male_adult_54_years	chr15	62894582	62894611	62894610	+	RAMPAGE_only	4	4	10	0.795721	2.921928	chr15	62894534	62894826	SINE|Alu|AluSx3	+	chr15	62895811	62899543	AC103740.2|ENST00000557900.1	+	62895811,62898650	62896143,62899543	0.800000
esophagus_muscularis_mucosa_male_adult_54_years	chr21	28048446	28048447	28048446	+	High_confidence	368	378	426	33.897717	4.647068	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.969484
esophagus_muscularis_mucosa_male_adult_54_years	chr19	12800944	12800991	12800944	-	High_confidence	5	5	23	1.830158	4.061482	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.826087
esophagus_muscularis_mucosa_male_adult_54_years	chr6	169654678	169654700	169654678	-	RAMPAGE_only	2	2	9	0.716149	2.500000	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169457336	169665933	STRG.41686.1	-	169457336,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197,169651929,169658275,169659085,169659450,169660662,169662303,169664165	169457634,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649275,169652008,169658358,169659207,169659518,169660766,169662424,169665933	0.666667
esophagus_muscularis_mucosa_male_adult_54_years	chr10	7076088	7076109	7076088	-	RAMPAGE_only	3	3	7	0.557005	2.521641	chr10	7075832	7076263	LTR|ERVL|LTR16C	+	chr10	6935099	6935404	STRG.55121.1	-	6935099	6935404	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr1	174874418	174874439	174874418	+	High_confidence	4	4	9	0.716149	2.725481	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.555556
esophagus_muscularis_mucosa_male_adult_54_years	chr19	17556555	17556569	17556555	+	High_confidence	3	6	11	0.875293	2.845351	chr19	17556574	17556631	SINE|MIR|MIR	+	chr19	17556560	17568577	COLGALT1|ENST00000600474.1	+	17556560,17559310,17560347,17567405,17568508	17556679,17559421,17560465,17567540,17568577	0.818182
esophagus_muscularis_mucosa_male_adult_54_years	chr10	93431427	93431495	93431448	-	RAMPAGE_only	5	6	21	1.671014	3.820889	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr15	65244454	65244455	65244454	-	RAMPAGE_only	13	13	19	1.511870	3.350209	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.947368
esophagus_muscularis_mucosa_male_adult_54_years	chr11	118647768	118647868	118647768	+	RAMPAGE_only	8	8	45	3.580745	4.691853	chr11	118647666	118647768	SINE|MIR|MIRb	-	chr11	118646333	118657152	PHLDB1|ENST00000526537.2	+	118646333,118650076,118650444,118655604,118656682	118648076,118650193,118650547,118655690,118657152	0.866667
esophagus_muscularis_mucosa_male_adult_54_years	chr12	12927708	12927741	12927733	+	High_confidence	18	20	48	3.819461	5.028890	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.604167
esophagus_muscularis_mucosa_male_adult_54_years	chrX	103607551	103607580	103607579	+	High_confidence	7	7	23	1.830158	4.004886	chrX	103607556	103607707	SINE|MIR|MIRb	+	chrX	103607450	103609927	TCEAL3|ENST00000372628.5	+	103607450,103608603,103609042	103607716,103608673,103609927	0.956522
esophagus_muscularis_mucosa_male_adult_54_years	chr2	164352222	164352259	164352232	-	High_confidence	7	7	34	2.705452	4.160705	chr2	164352042	164352431	LTR|ERVL-MaLR|MLT1C	-	chr2	163749572	164352223	AC016766.1|ENST00000429636.1	-	163749572,163869148,163950180,164250719,164352119	163749907,163869252,163950259,164250811,164352223	0.647059
esophagus_muscularis_mucosa_male_adult_54_years	chr6	144533090	144533091	144533090	+	RAMPAGE_only	4	4	6	0.477433	2.584963	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.833333
esophagus_muscularis_mucosa_male_adult_54_years	chrX	81262650	81262673	81262650	+	RAMPAGE_only	7	7	25	1.989303	3.849224	chrX	81262192	81262806	LINE|L1|L1MD3	+	chrX	81255493	81297516	SH3BGRL|ENST00000474113.1	+	81255493,81276983,81278330,81297194	81255643,81277169,81278411,81297516	0.760000
esophagus_muscularis_mucosa_male_adult_54_years	chr15	93863018	93863034	93863033	+	High_confidence	4	4	10	0.795721	2.947703	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.800000
esophagus_muscularis_mucosa_male_adult_54_years	chr11	72111493	72111497	72111496	-	High_confidence	3	5	8	0.636577	2.521641	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72108817	72111497	ANAPC15|ENST00000538117.5	-	72108817,72109228,72110087,72110543,72111156,72111411	72108875,72109341,72110225,72110603,72111281,72111497	0.500000
esophagus_muscularis_mucosa_male_adult_54_years	chr19	47780106	47780109	47780107	+	High_confidence	7	11	17	1.352726	4.000000	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.882353
esophagus_muscularis_mucosa_male_adult_54_years	chrX	11351636	11351637	11351636	-	RAMPAGE_only	13	13	17	1.352726	3.337175	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.705882
esophagus_muscularis_mucosa_male_adult_54_years	chr4	87524560	87524563	87524562	-	RAMPAGE_only	4	6	8	0.636577	2.500000	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87494416	87528619	SPARCL1|ENST00000535835.5	-	87494416,87494980,87499520,87504821,87528554	87494598,87495127,87499585,87504923,87528619	0.625000
esophagus_muscularis_mucosa_male_adult_54_years	chr19	49086520	49086547	49086520	+	High_confidence	12	14	30	2.387163	4.056565	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.966667
esophagus_muscularis_mucosa_male_adult_54_years	chr14	81427421	81427467	81427441	-	High_confidence	6	6	26	2.068875	4.303509	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.846154
esophagus_muscularis_mucosa_male_adult_54_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	10	10	14	1.114009	3.235926	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr12	46243286	46243308	46243293	-	RAMPAGE_only	3	5	17	1.352726	3.572469	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr9	98943559	98943585	98943575	+	High_confidence	9	10	34	2.705452	4.477025	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr5	109383497	109383521	109383520	-	High_confidence	3	3	9	0.716149	2.725481	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr16	81181319	81181331	81181330	-	High_confidence	9	9	23	1.830158	4.262692	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.956522
esophagus_muscularis_mucosa_male_adult_54_years	chr20	50131130	50131162	50131139	-	High_confidence	51	56	168	13.368114	5.894853	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.976190
esophagus_muscularis_mucosa_male_adult_54_years	chr2	217939254	217939282	217939281	-	RAMPAGE_only	11	11	19	1.511870	3.366091	chr2	217939059	217939291	SINE|MIR|MIR	-	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.631579
esophagus_muscularis_mucosa_male_adult_54_years	chr8	143281669	143281687	143281686	-	High_confidence	46	48	129	10.264802	5.045431	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.759690
esophagus_muscularis_mucosa_male_adult_54_years	chr2	200889261	200889294	200889293	-	High_confidence	14	14	47	3.739889	4.985412	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.510638
esophagus_muscularis_mucosa_male_adult_54_years	chr4	118769843	118769863	118769862	-	High_confidence	6	6	18	1.432298	2.705229	chr4	118769853	118769919	SINE|MIR|MIRb	+	chr4	118723023	118769840	SEC24D|ENST00000511481.5	-	118723023,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118769763	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118769840	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr15	75347042	75347074	75347042	+	High_confidence	6	6	18	1.432298	3.308271	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347089	75355245	NEIL1|ENST00000561643.5	+	75347089,75347202,75348883,75352110,75352323,75352601,75354652,75354963	75347110,75347473,75349339,75352230,75352387,75354492,75354818,75355245	0.944444
esophagus_muscularis_mucosa_male_adult_54_years	chr17	4736359	4736404	4736359	-	High_confidence	3	4	16	1.273154	2.952820	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr19	35115816	35115873	35115816	+	High_confidence	4	4	22	1.750586	4.243300	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr1	166850112	166850125	166850124	+	RAMPAGE_only	18	18	32	2.546307	3.885828	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166845239	166856341	STRG.5694.3	+	166845239,166847493,166848937,166849787	166846738,166847592,166849733,166856341	0.968750
esophagus_muscularis_mucosa_male_adult_54_years	chrX	136168208	136168209	136168208	+	High_confidence	11	11	15	1.193582	3.039149	chrX	136168049	136168241	SINE|MIR|MIR	-	chrX	136168193	136208575	FHL1|ENST00000434885.5	+	136168193,136169906,136206406,136207015,136207791,136208454	136168267,136169980,136206588,136207190,136207961,136208575	0.600000
esophagus_muscularis_mucosa_male_adult_54_years	chr12	16608172	16608189	16608172	-	High_confidence	6	8	28	2.228019	3.976386	chr12	16608118	16608177	LTR|ERV1|MER4-int	+	chr12	16548419	16608135	LMO3|ENST00000441439.6	-	16548419,16560412,16600654,16606065,16607935	16551327,16560538,16600868,16606132,16608135	0.642857
esophagus_muscularis_mucosa_male_adult_54_years	chr15	98017759	98017790	98017769	-	High_confidence	29	32	120	9.548653	6.196189	chr15	98016264	98017842	LINE|L2|L2a	+	chr15	97992926	98017782	STRG.76756.2	-	97992926,98016427	97996228,98017782	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr1	39026110	39026136	39026110	+	High_confidence	2	2	8	0.636577	2.500000	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr11	65181205	65181233	65181205	+	High_confidence	4	4	13	1.034437	2.751629	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.923077
esophagus_muscularis_mucosa_male_adult_54_years	chr16	67571180	67571220	67571180	+	High_confidence	4	4	10	0.795721	2.521928	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr14	21360422	21360453	21360422	-	RAMPAGE_only	2	2	7	0.557005	2.521641	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21270814	21383946	STRG.70477.1	-	21270814,21351493,21353487,21353702,21354410,21357196,21357926,21358314,21359483,21360414,21360845,21361077,21362196,21362793,21363033,21363232,21363437,21364826,21365069,21366438,21368268,21369203,21369749,21370335,21371873,21373337,21383861	21270832,21352818,21353565,21353832,21354540,21357366,21358002,21358427,21359609,21360533,21360972,21361213,21362324,21362947,21363149,21363328,21363503,21364939,21365143,21366529,21368441,21369355,21369896,21370488,21372044,21373430,21383946	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr2	173182199	173182242	173182199	+	RAMPAGE_only	10	10	23	1.830158	4.001823	chr2	173182099	173182382	LINE|L1|L1MB7	+	chr2	173160009	173191177	MAP3K20|ENST00000480606.1	+	173160009,173169804,173182853,173187557,173190894,173191039	173160407,173169892,173182955,173187623,173190923,173191177	0.652174
esophagus_muscularis_mucosa_male_adult_54_years	chrX	123602808	123602818	123602808	-	RAMPAGE_only	10	10	24	1.909731	3.277613	chrX	123602725	123603025	SINE|Alu|AluSc8	+	chrX	123602099	123621579	THOC2|ENST00000432353.5	-	123602099,123610917,123611439,123613398,123613638,123614051,123619400,123620374,123621156	123603748,123610963,123611516,123613556,123613708,123614189,123619436,123620965,123621579	0.833333
esophagus_muscularis_mucosa_male_adult_54_years	chr14	44912628	44912659	44912628	-	High_confidence	7	9	24	1.909731	3.490602	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.625000
esophagus_muscularis_mucosa_male_adult_54_years	chr3	139344537	139344548	139344547	+	High_confidence	11	11	25	1.989303	4.053661	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.960000
esophagus_muscularis_mucosa_male_adult_54_years	chr12	55516318	55516319	55516318	+	RAMPAGE_only	7	7	7	0.557005	2.521641	chr12	55515725	55517184	LINE|L1|L1M1	+	chr12	56158160	56161574	MYL6|ENST00000550697.5	+	56158160,56158683,56159586,56159974,56160242,56160625,56161386	56158404,56158711,56159730,56160148,56160320,56160670,56161574	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr19	20423697	20423704	20423703	-	High_confidence	11	18	38	3.023740	3.494528	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20341040	20423679	STRG.85431.1	-	20341040,20408949,20423480	20341101,20409045,20423679	0.868421
esophagus_muscularis_mucosa_male_adult_54_years	chr8	38825311	38825361	38825360	+	RAMPAGE_only	11	14	74	5.888336	5.217211	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.864865
esophagus_muscularis_mucosa_male_adult_54_years	chr7	154928492	154928504	154928503	+	High_confidence	6	6	10	0.795721	2.947703	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.700000
esophagus_muscularis_mucosa_male_adult_54_years	chr11	123060124	123060256	123060168	-	High_confidence	24	24	165	13.129397	4.954569	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	0.993939
esophagus_muscularis_mucosa_male_adult_54_years	chr17	59651214	59651236	59651214	+	RAMPAGE_only	3	3	15	1.193582	2.923231	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr15	80059915	80059933	80059918	+	High_confidence	210	252	464	36.921457	5.340643	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.974138
esophagus_muscularis_mucosa_male_adult_54_years	chr2	48479384	48479385	48479384	+	High_confidence	71	71	84	6.684057	5.367370	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48478810	48515385	STRG.10625.5	+	48478810,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515385	0.916667
esophagus_muscularis_mucosa_male_adult_54_years	chr17	63691818	63691840	63691839	+	RAMPAGE_only	4	5	9	0.716149	2.641604	chr17	63691879	63692027	SINE|MIR|MIRc	+	chr17	63622709	63693874	MAP3K3|ENST00000577395.5	+	63622709,63632680,63646033,63652556,63657793,63666939,63681765,63685516,63688526,63688788,63689543,63690263,63691101,63691732,63692241,63693548	63622763,63632802,63646074,63652656,63657907,63667060,63681899,63685578,63688594,63688881,63689735,63690412,63691233,63691862,63692419,63693874	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr19	5680226	5680249	5680240	-	High_confidence	4	4	15	1.193582	3.323231	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr11	60182517	60182572	60182550	-	High_confidence	5	5	21	1.671014	3.630413	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.809524
esophagus_muscularis_mucosa_male_adult_54_years	chr4	184537536	184537585	184537584	-	High_confidence	5	5	24	1.909731	4.220176	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184536618	184537365	STRG.29429.1	-	184536618	184537365	0.750000
esophagus_muscularis_mucosa_male_adult_54_years	chr4	81154211	81154248	81154211	-	High_confidence	5	6	20	1.591442	3.681881	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.950000
esophagus_muscularis_mucosa_male_adult_54_years	chr2	179043807	179043808	179043807	-	RAMPAGE_only	7	7	9	0.716149	2.947703	chr2	179042647	179044414	LINE|L1|L1PA10	+	chr2	178829756	179050059	CCDC141|NM_173648.3	-	178829756,178836893,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900,178886751,178888526,178905328,178918712,178944534,178961229,178975056,178978483,179047283,179049839	178834440,178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178885092,178886871,178888668,178905501,178918907,178944651,178961483,178975165,178978675,179047406,179050059	0.888889
esophagus_muscularis_mucosa_male_adult_54_years	chr9	122164574	122164597	122164595	+	High_confidence	23	32	72	5.729192	5.061947	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122164614	122174568	MORN5|ENST00000418632.1	+	122164614,122166767,122169644,122174495	122164647,122166915,122169756,122174568	0.625000
esophagus_muscularis_mucosa_male_adult_54_years	chr16	20676161	20676202	20676201	-	High_confidence	7	7	18	1.432298	3.734522	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.833333
esophagus_muscularis_mucosa_male_adult_54_years	chr6	39865071	39865072	39865071	+	RAMPAGE_only	4	4	6	0.477433	2.584963	chr6	39865016	39865115	DNA|TcMar-Tigger|Tigger19b	-	chr6	39867312	39868879	DAAM2|ENST00000632657.1	+	39867312	39868879	0.500000
esophagus_muscularis_mucosa_male_adult_54_years	chr11	123061182	123061303	123061256	-	High_confidence	59	69	218	17.346719	5.433719	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.958716
esophagus_muscularis_mucosa_male_adult_54_years	chr11	71999607	71999615	71999607	+	High_confidence	7	8	14	1.114009	3.235926	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999600	72002697	IL18BP|ENST00000534583.5	+	71999600,72000350,72001200,72001404,72001783,72002552	72000012,72000557,72001324,72001552,72001948,72002697	0.928571
esophagus_muscularis_mucosa_male_adult_54_years	chr19	11539683	11539706	11539705	+	High_confidence	9	10	38	3.023740	4.313460	chr19	11539660	11539789	SINE|MIR|MIRb	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	0.736842
esophagus_muscularis_mucosa_male_adult_54_years	chr14	81192592	81192682	81192681	-	RAMPAGE_only	5	5	28	2.228019	3.958229	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.964286
esophagus_muscularis_mucosa_male_adult_54_years	chr16	70590319	70590320	70590319	+	RAMPAGE_only	7	7	11	0.875293	2.921928	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.909091
esophagus_muscularis_mucosa_male_adult_54_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	20	21	26	2.068875	3.943465	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.615385
esophagus_muscularis_mucosa_male_adult_54_years	chr16	15798662	15798675	15798664	-	RAMPAGE_only	229	308	640	50.926148	6.668884	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.943750
esophagus_muscularis_mucosa_male_adult_54_years	chr2	200889135	200889157	200889153	-	High_confidence	7	7	19	1.511870	3.947703	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889154	PPIL3|ENST00000392283.8	-	200870955,200876918,200881420,200882341,200885697,200887612,200888955	200871521,200877037,200881488,200882435,200885772,200887685,200889154	0.894737
esophagus_muscularis_mucosa_male_adult_54_years	chr16	15786784	15786840	15786839	-	RAMPAGE_only	4	4	22	1.750586	3.481715	chr16	15786776	15786946	SINE|MIR|MIRc	-	chr16	15785014	15857028	MYH11|ENST00000571505.1	-	15785014,15798659,15823254,15837907,15856940	15786732,15798687,15823411,15838269,15857028	0.954545
esophagus_muscularis_mucosa_male_adult_54_years	chr16	15710513	15710514	15710513	-	High_confidence	12	12	17	1.352726	3.572469	chr16	15710240	15710545	SINE|Alu|AluSc	+	chr16	15703740	15711270	MYH11|ENST00000573908.1	-	15703740,15711112	15704123,15711270	0.882353
esophagus_muscularis_mucosa_male_adult_54_years	chr11	117811485	117811527	117811526	-	RAMPAGE_only	4	4	10	0.795721	2.521928	chr11	117810272	117812670	LTR|ERV1|HERVH-int	+	chr11	117776808	117817525	DSCAML1|ENST00000525836.1	-	117776808,117780492,117817389	117776937,117780810,117817525	0.900000
esophagus_muscularis_mucosa_male_adult_54_years	chr5	14653390	14653391	14653390	-	High_confidence	71	72	72	5.729192	4.057785	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.986111
esophagus_muscularis_mucosa_male_adult_54_years	chrY	3002985	3002986	3002985	+	High_confidence	6	6	8	0.636577	2.750000	chrY	3002992	3005218	LTR|ERV1|HERV3-int	+	chrY	3002995	3102272	LINC00278|NR_046502.1	+	3002995,3079283,3096994,3102084	3003217,3079341,3097056,3102272	0.500000
esophagus_muscularis_mucosa_male_adult_54_years	chr11	64226142	64226180	64226158	-	High_confidence	75	81	337	26.815800	6.773564	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.985163
esophagus_muscularis_mucosa_male_adult_54_years	chr17	59619894	59619923	59619894	+	High_confidence	377	414	889	70.739602	5.919682	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.978628
esophagus_muscularis_mucosa_male_adult_54_years	chr15	56737902	56737905	56737902	-	RAMPAGE_only	3	3	7	0.557005	2.521641	chr15	56737845	56738254	LTR|ERVL-MaLR|MLT1J2	+	chr15	56630175	56734086	ZNF280D|NM_001002843.2	-	56630175,56635194,56642951,56654197,56654384,56658423,56666394,56666678,56668822,56676669,56677573,56678663,56682253,56689040,56689299,56693097,56700932,56701172,56704120,56707262,56733457	56632122,56635250,56642997,56654234,56654503,56658486,56666535,56666986,56668957,56676816,56677674,56678821,56682477,56689150,56689470,56693215,56701072,56701238,56704267,56707306,56734086	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr2	3536839	3536868	3536839	-	High_confidence	7	7	41	3.262456	4.803056	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.731707
esophagus_muscularis_mucosa_male_adult_54_years	chr4	86453161	86453203	86453202	-	High_confidence	15	17	70	5.570047	4.168011	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.885714
esophagus_muscularis_mucosa_male_adult_54_years	chr5	172954206	172954233	172954206	+	RAMPAGE_only	10	10	23	1.830158	3.629220	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172958728	172969716	RPL26L1|ENST00000519974.5	+	172958728,172959864,172968458,172969412	172958801,172960041,172968599,172969716	0.869565
esophagus_muscularis_mucosa_male_adult_54_years	chr10	71615246	71615258	71615257	+	RAMPAGE_only	3	3	8	0.636577	2.521641	chr10	71614899	71615319	DNA|hAT-Charlie|MER113	-	chr10	71570794	71716872	CDH23|ENST00000466757.8	+	71570794,71577913,71615503,71617204,71635237,71643860,71645830,71646458,71675111,71677455,71679386,71682444,71687646,71690467,71694146,71695417,71702021,71702548,71704910,71706896,71709097,71712664,71715201	71570918,71577992,71615616,71617393,71635297,71643866,71645980,71646617,71675176,71677693,71679492,71682572,71687719,71690584,71694259,71695525,71702211,71702694,71705130,71707049,71709211,71712813,71716872	0.625000
esophagus_muscularis_mucosa_male_adult_54_years	chr9	121313949	121314021	121314002	+	RAMPAGE_only	86	88	363	28.884674	5.461637	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.983471
esophagus_muscularis_mucosa_male_adult_54_years	chr10	103181328	103181329	103181328	-	High_confidence	21	21	21	1.671014	3.713048	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103169283	103181320	NT5C2|ENST00000467380.1	-	103169283,103174857,103181184	103169449,103174982,103181320	0.523810
esophagus_muscularis_mucosa_male_adult_54_years	chr12	123390744	123390762	123390744	+	High_confidence	3	3	9	0.716149	2.725481	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr20	44714452	44714470	44714452	+	High_confidence	4	4	11	0.875293	2.913977	chr20	44714278	44714680	LINE|L2|L2b	+	chr20	44714843	44727812	WISP2|NM_001323370.1	+	44714843,44715365,44719896,44724737,44727086	44715161,44715450,44720113,44724992,44727812	0.727273
esophagus_muscularis_mucosa_male_adult_54_years	chr15	75626304	75626305	75626304	-	High_confidence	6	6	9	0.716149	2.503258	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.777778
esophagus_muscularis_mucosa_male_adult_54_years	chr11	63479003	63479004	63479003	-	RAMPAGE_only	8	8	8	0.636577	2.750000	chr11	63478801	63478955	SINE|MIR|MIR3	-	chr11	62533983	62556235	AHNAK|ENST00000530285.5	-	62533983,62535002,62535944,62536468,62556187	62534074,62535190,62536098,62536567,62556235	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr16	27243358	27243371	27243370	-	RAMPAGE_only	8	9	17	1.352726	3.155639	chr16	27243362	27243410	LINE|L2|L2c	+	chr16	27233069	27258151	NSMCE1|ENST00000563900.5	-	27233069,27234187,27235177,27257434,27258083	27233147,27234265,27235299,27257581,27258151	0.588235
esophagus_muscularis_mucosa_male_adult_54_years	chr7	40509494	40509498	40509494	+	High_confidence	113	114	221	17.585435	5.872897	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40509443	40860631	STRG.43279.5	+	40509443,40749433,40860315	40509545,40749497,40860631	0.855204
esophagus_muscularis_mucosa_male_adult_54_years	chr19	39390079	39390127	39390094	-	High_confidence	2	2	13	1.034437	2.918296	chr19	39389937	39390046	LINE|L2|L2a	-	chr19	39389293	39391082	PAF1|ENST00000595797.5	-	39389293,39389479,39390068,39390259,39390817	39389383,39389761,39390161,39390289,39391082	0.538462
esophagus_muscularis_mucosa_male_adult_54_years	chr14	102235451	102235473	102235458	-	High_confidence	6	6	24	1.909731	3.879664	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.875000
esophagus_muscularis_mucosa_male_adult_54_years	chr8	27977120	27977126	27977125	-	High_confidence	27	27	51	4.058177	4.646370	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977111	STRG.47985.3	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977111	0.960784
esophagus_muscularis_mucosa_male_adult_54_years	chr6	29497474	29497475	29497474	+	High_confidence	24	25	34	2.705452	4.490919	chr6	29497305	29497670	LTR|ERVL-MaLR|THE1D	+	chr6	29497508	29510556	AL662860.1|ENST00000436804.1	+	29497508,29505320,29507168,29510267	29497539,29505377,29507668,29510556	0.911765
esophagus_muscularis_mucosa_male_adult_54_years	chr10	72355145	72355146	72355145	-	High_confidence	11	11	17	1.352726	3.381580	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr3	37058886	37058887	37058886	-	RAMPAGE_only	5	5	8	0.636577	2.521641	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.750000
esophagus_muscularis_mucosa_male_adult_54_years	chr21	29077476	29077501	29077486	+	High_confidence	4	4	15	1.193582	3.521641	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.666667
esophagus_muscularis_mucosa_male_adult_54_years	chr1	21876237	21876316	21876237	-	RAMPAGE_only	8	9	34	2.705452	4.197326	chr1	21876092	21876241	LINE|L2|L2c	+	chr1	21874477	21896271	STRG.732.2	-	21874477,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21888667,21889980,21890426,21890584,21895921,21896174	21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21888718,21890141,21890485,21890694,21895966,21896271	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr5	55982765	55982800	55982799	-	High_confidence	8	8	18	1.432298	3.683542	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.944444
esophagus_muscularis_mucosa_male_adult_54_years	chr1	39310260	39310281	39310275	+	RAMPAGE_only	2	2	9	0.716149	2.947703	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.888889
esophagus_muscularis_mucosa_male_adult_54_years	chr22	50785210	50785258	50785210	+	RAMPAGE_only	3	3	16	1.273154	3.373557	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.937500
esophagus_muscularis_mucosa_male_adult_54_years	chr10	28335269	28335306	28335295	-	High_confidence	66	69	212	16.869286	4.663436	chr10	28335237	28335330	SINE|Alu|AluYc	-	chr10	28125009	28335304	STRG.55708.3	-	28125009,28131559,28147482,28149981,28202152,28238567,28334869	28125091,28131691,28147563,28150059,28202271,28238735,28335304	0.957547
esophagus_muscularis_mucosa_male_adult_54_years	chr2	159428345	159428357	159428356	-	RAMPAGE_only	6	6	18	1.432298	3.616875	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.555556
esophagus_muscularis_mucosa_male_adult_54_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	34	37	37	2.944168	4.465946	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888512	77933384	NEXN|ENST00000401035.7	+	77888512,77916054,77917959,77918124,77925187,77926413,77926715,77929315,77933281	77888759,77916133,77918038,77918273,77925229,77926611,77926892,77929504,77933384	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr2	227534919	227534933	227534932	+	RAMPAGE_only	3	4	6	0.477433	2.584963	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr4	119058902	119059001	119058950	+	RAMPAGE_only	3	3	25	1.989303	3.669275	chr4	119058963	119059058	SINE|MIR|MIR3	+	chr4	119023470	119061247	SYNPO2|ENST00000504178.1	+	119023470,119026626,119029844,119057400	119023581,119027438,119031853,119061247	1.000000
esophagus_muscularis_mucosa_male_adult_54_years	chr6	28354054	28354062	28354054	-	High_confidence	2	2	7	0.557005	2.521641	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28326294	28354051	STRG.36648.1	-	28326294,28327382,28329302,28336789,28353861	28326854,28327533,28329778,28336943,28354051	0.714286
esophagus_muscularis_mucosa_male_adult_54_years	chr19	9140393	9140428	9140427	+	High_confidence	19	19	83	6.604485	5.024162	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.831325
esophagus_squamous_epithelium_female_adult_51_years	chr11	17282811	17282905	17282904	+	RAMPAGE_only	4	4	30	1.982709	3.967720	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.666667
esophagus_squamous_epithelium_female_adult_51_years	chr9	33068829	33068850	33068829	-	RAMPAGE_only	3	3	15	0.991354	3.235926	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.933333
esophagus_squamous_epithelium_female_adult_51_years	chr15	100484549	100484633	100484549	-	RAMPAGE_only	3	3	26	1.718348	3.690260	chr15	100484388	100484502	SINE|MIR|MIR3	-	chr15	100398677	100529265	STRG.62066.1	-	100398677,100455892,100469377,100472923,100476085,100479427,100479988,100484549,100490816,100501676,100521666,100528812	100402865,100456046,100469484,100473052,100476178,100479478,100480046,100484668,100490931,100501850,100521756,100529265	0.961538
esophagus_squamous_epithelium_female_adult_51_years	chr3	57267772	57267773	57267772	+	RAMPAGE_only	28	28	38	2.511431	4.336633	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.973684
esophagus_squamous_epithelium_female_adult_51_years	chr17	10081206	10081269	10081268	-	RAMPAGE_only	7	7	16	1.057445	3.456565	chr17	10081158	10081453	SINE|Alu|AluSg	-	chr17	9946932	10061379	GAS7|ENST00000584389.5	-	9946932,9959201,9969676,9981803,10019776,10061218	9946983,9959255,9969762,9981884,10019897,10061379	0.812500
esophagus_squamous_epithelium_female_adult_51_years	chrX	48683361	48683362	48683361	+	High_confidence	5	8	8	0.528722	2.500000	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.750000
esophagus_squamous_epithelium_female_adult_51_years	chr17	4187145	4187146	4187145	-	High_confidence	7	7	8	0.528722	2.521641	chr17	4187012	4187196	LINE|L1|L1PB2	-	chr17	4183525	4187109	ANKFY1|ENST00000574736.1	-	4183525,4183811,4184817,4186893	4183551,4183910,4185046,4187109	0.875000
esophagus_squamous_epithelium_female_adult_51_years	chr5	93755743	93755769	93755743	-	High_confidence	3	4	16	1.057445	3.189898	chr5	93755381	93761065	LINE|L1|L1PB1	+	chr5	93618068	93756212	STRG.25824.5	-	93618068,93755659	93621129,93756212	0.937500
esophagus_squamous_epithelium_female_adult_51_years	chr14	24270842	24270924	24270844	-	High_confidence	12	19	93	6.146397	5.118788	chr14	24270551	24270794	SINE|MIR|MIR	-	chr14	24267903	24271183	RABGGTA|ENST00000543002.5	-	24267903,24268109,24268513,24268724,24268910,24269079,24269490,24269952,24270333,24271112	24267958,24268420,24268619,24268826,24268993,24269163,24269694,24270140,24270458,24271183	0.946237
esophagus_squamous_epithelium_female_adult_51_years	chr11	33696955	33696997	33696955	-	High_confidence	5	5	9	0.594813	2.947703	chr11	33696789	33697100	LINE|L2|L2a	+	chr11	33665219	33696701	AL049629.1|ENST00000534431.1	-	33665219,33669523,33670914,33696585	33665564,33669645,33670979,33696701	0.555556
esophagus_squamous_epithelium_female_adult_51_years	chr11	129839632	129839674	129839632	+	RAMPAGE_only	4	4	13	0.859174	2.688722	chr11	129839532	129839834	SINE|Alu|AluJb	-	chr11	129850331	129859215	TMEM45B|ENST00000524567.1	+	129850331,129852474,129854609,129855707,129857312,129858573	129850604,129852660,129854816,129855892,129857458,129859215	0.923077
esophagus_squamous_epithelium_female_adult_51_years	chr1	9894207	9894252	9894251	-	RAMPAGE_only	10	10	48	3.172334	4.829449	chr1	9894071	9894347	LINE|L1|L1MC4	-	chr1	9850449	9893237	CTNNBIP1|ENST00000377258.5	-	9850449,9871186,9871968,9877904,9893008	9850776,9871277,9872088,9877989,9893237	0.895833
esophagus_squamous_epithelium_female_adult_51_years	chr9	134356260	134356272	134356260	+	RAMPAGE_only	7	7	14	0.925264	3.392747	chr9	134356265	134356363	SINE|MIR|MIRb	+	chr9	134371970	134440585	RXRA|ENST00000356384.4	+	134371970,134374006,134401395,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134372139,134374130,134401540,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440585	0.928571
esophagus_squamous_epithelium_female_adult_51_years	chr12	123390709	123390762	123390743	+	High_confidence	14	15	56	3.701056	4.759658	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.964286
esophagus_squamous_epithelium_female_adult_51_years	chr2	47369461	47369487	47369471	+	High_confidence	3	3	10	0.660903	2.503258	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369474	47375254	EPCAM|ENST00000474691.1	+	47369474,47373462,47375233	47369581,47374048,47375254	0.600000
esophagus_squamous_epithelium_female_adult_51_years	chr19	34860645	34860646	34860645	-	High_confidence	4	5	7	0.462632	2.807355	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.857143
esophagus_squamous_epithelium_female_adult_51_years	chr3	129256129	129256137	129256129	+	RAMPAGE_only	4	4	8	0.528722	2.750000	chr3	129256170	129256401	DNA|hAT|MamRep38	+	chr3	129260226	129265675	COPG1|ENST00000504547.1	+	129260226,129260618,129263903,129265548	129260400,129260807,129263999,129265675	0.875000
esophagus_squamous_epithelium_female_adult_51_years	chr6	13794211	13794242	13794241	-	RAMPAGE_only	54	54	86	5.683765	3.880831	chr6	13794117	13794268	SINE|Alu|FLAM_C	-	chr6	13787133	13801345	MCUR1|ENST00000607303.1	-	13787133,13788645,13791877,13793893,13798832,13800340,13801287	13787355,13788704,13791992,13793947,13798904,13800382,13801345	0.965116
esophagus_squamous_epithelium_female_adult_51_years	chr11	12989543	12989546	12989543	-	High_confidence	101	132	251	16.588664	6.443602	chr11	12989406	12989730	LTR|ERVL-MaLR|THE1D	-	chr11	12961841	12989547	LINC00958|ENST00000527945.2	-	12961841,12965107,12989455	12962763,12965214,12989547	0.617530
esophagus_squamous_epithelium_female_adult_51_years	chr15	80059915	80059926	80059918	+	High_confidence	34	38	88	5.815946	4.963782	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.977273
esophagus_squamous_epithelium_female_adult_51_years	chr17	1659356	1659357	1659356	-	RAMPAGE_only	6	6	9	0.594813	2.641604	chr17	1659014	1659325	SINE|Alu|AluSx3	-	chr17	1650630	1684837	PRPF8|ENST00000572621.5	-	1650630,1651107,1651413,1651647,1653541,1653776,1655349,1656391,1656647,1658252,1658525,1659356,1659840,1660431,1660697,1660992,1661270,1661610,1661905,1673080,1673356,1673745,1674441,1675151,1675619,1675927,1676206,1676504,1676975,1677564,1678517,1678761,1679016,1679290,1679608,1680725,1680928,1681477,1681819,1682128,1683532,1684471	1650956,1651310,1651553,1651788,1653683,1654016,1655543,1656565,1656761,1658381,1658763,1659548,1660001,1660578,1660827,1661162,1661406,1661790,1662153,1673197,1673567,1673892,1674680,1675339,1675812,1676054,1676370,1676711,1677172,1677694,1678652,1678881,1679206,1679410,1679799,1680831,1681054,1681690,1682038,1682293,1683701,1684837	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr22	50756908	50756931	50756908	+	High_confidence	4	4	16	1.057445	3.500000	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.687500
esophagus_squamous_epithelium_female_adult_51_years	chr16	21048703	21048704	21048703	-	RAMPAGE_only	9	9	10	0.660903	3.169925	chr16	21042672	21048703	LINE|L1|L1PA2	-	chr16	20996858	21063000	DNAH3|ENST00000572640.5	-	20996858,21000223,21003103,21019623,21021970,21024595,21027026,21031044,21033973,21036713,21037760,21039851,21042026,21049568,21049909,21051669,21054419,21058085,21060263,21062481,21062771	20997462,21000518,21003207,21019869,21022100,21024701,21027127,21031286,21034085,21036848,21037980,21039943,21042203,21049682,21050018,21051868,21054534,21058196,21060356,21062683,21063000	0.800000
esophagus_squamous_epithelium_female_adult_51_years	chr5	73078287	73078289	73078287	+	RAMPAGE_only	5	8	11	0.726993	2.721928	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.909091
esophagus_squamous_epithelium_female_adult_51_years	chr3	55505262	55505263	55505262	-	High_confidence	34	40	40	2.643612	4.734184	chr3	55505081	55505454	LTR|ERVL-MaLR|THE1D	-	chr3	55493829	55505261	AC121764.1|ENST00000472238.1	-	55493829,55497388,55501598,55505197	55494055,55497477,55501782,55505261	0.650000
esophagus_squamous_epithelium_female_adult_51_years	chr12	109852107	109852237	109852107	-	RAMPAGE_only	13	16	67	4.428050	5.023423	chr12	109851848	109852148	SINE|Alu|AluSq2	-	chr12	109850942	109880488	GLTP|NM_016433.3	-	109850942,109855618,109857525,109858682,109880271	109852737,109855769,109857659,109858741,109880488	0.985075
esophagus_squamous_epithelium_female_adult_51_years	chr16	21160997	21161006	21160997	+	RAMPAGE_only	2	2	8	0.528722	2.521641	chr16	21160737	21161019	LINE|L1|L1MC	-	chr16	21158709	21179609	STRG.62776.5	+	21158709,21161084,21170436,21174009,21179474	21158746,21161278,21170605,21174148,21179609	0.750000
esophagus_squamous_epithelium_female_adult_51_years	chr18	31476531	31476676	31476655	+	RAMPAGE_only	30	36	144	9.517002	5.611053	chr18	31476677	31476987	SINE|Alu|AluYb8	+	chr18	31447794	31478702	DSG3|ENST00000257189.4	+	31447794,31456439,31456992,31458444,31459032,31459844,31460832,31461226,31464110,31465317,31466529,31469088,31472283,31472724,31474120,31475645	31447925,31456475,31457124,31458600,31459177,31460011,31460961,31461412,31464382,31465457,31466754,31469349,31472423,31472788,31474404,31478702	0.986111
esophagus_squamous_epithelium_female_adult_51_years	chr7	137254876	137254969	137254958	-	RAMPAGE_only	10	12	125	8.261287	5.631042	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.984000
esophagus_squamous_epithelium_female_adult_51_years	chr2	173533112	173533154	173533153	+	High_confidence	3	3	12	0.793084	3.584963	chr2	173527289	173533317	LINE|L1|L1PA3	-	chr2	173532881	173698441	STRG.11651.1	+	173532881,173697719	173533339,173698441	0.750000
esophagus_squamous_epithelium_female_adult_51_years	chr4	74114559	74114580	74114559	+	RAMPAGE_only	4	4	10	0.660903	2.721928	chr4	74114563	74114677	SINE|MIR|MIR	+	chr4	74123338	74160770	MTHFD2L|ENST00000475291.5	+	74123338,74125439,74143392,74160054	74123423,74125517,74143467,74160770	0.500000
esophagus_squamous_epithelium_female_adult_51_years	chr12	2798809	2798820	2798809	+	High_confidence	4	5	10	0.660903	2.721928	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr20	36122623	36122658	36122645	+	High_confidence	5	6	12	0.793084	2.732159	chr20	36122694	36122856	SINE|MIR|MIR3	+	chr20	36121721	36221934	STRG.72762.3	+	36121721,36122678,36125422,36173763,36175550,36177951,36178629,36182271,36185116,36187675,36188346,36190276,36190621,36194211,36197858,36209487,36212271,36218875,36219760,36221863	36121816,36122747,36125527,36173954,36175715,36178056,36178672,36182347,36185335,36187763,36188499,36190374,36190797,36194360,36198041,36209898,36212376,36218962,36219844,36221934	0.916667
esophagus_squamous_epithelium_female_adult_51_years	chr15	82935359	82935380	82935359	-	RAMPAGE_only	2	2	8	0.528722	3.000000	chr15	82934248	82936442	LINE|L2|L2a	+	chr15	82848982	82952721	HOMER2|ENST00000450735.6	-	82848982,82851150,82852141,82854643,82859028,82864166,82875272,82892684,82952530	82849903,82851231,82852252,82854800,82859135,82864259,82875404,82892841,82952721	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr10	110817762	110817786	110817762	+	RAMPAGE_only	6	8	18	1.189625	3.461320	chr10	110817495	110817997	LINE|L2|L2c	-	chr10	110644396	110839469	RBM20|ENST00000369519.3	+	110644396,110780800,110783365,110784340,110784791,110797507,110799786,110810382,110812277,110820071,110821274,110823479,110831060,110835867	110644645,110781884,110783427,110784432,110784889,110797648,110799918,110810462,110812947,110820176,110821935,110823614,110831182,110839469	0.944444
esophagus_squamous_epithelium_female_adult_51_years	chr12	10710653	10710654	10710653	-	High_confidence	17	17	20	1.321806	2.903702	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.850000
esophagus_squamous_epithelium_female_adult_51_years	chr7	154928468	154928504	154928491	+	High_confidence	3	5	13	0.859174	2.873141	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr3	124816480	124816514	124816491	+	High_confidence	21	24	50	3.304515	4.593270	chr3	124816318	124816531	DNA|TcMar-Tigger|Tigger16b	-	chr3	124816505	124827704	STRG.17654.1	+	124816505,124820516,124827659	124816662,124820680,124827704	0.680000
esophagus_squamous_epithelium_female_adult_51_years	chr15	40765592	40765597	40765596	+	High_confidence	4	4	9	0.594813	2.750000	chr15	40765434	40765599	SINE|Alu|FRAM	-	chr15	40765619	40767708	GCHFR|ENST00000558467.1	+	40765619,40767225	40765921,40767708	0.888889
esophagus_squamous_epithelium_female_adult_51_years	chr22	26536529	26536581	26536562	-	RAMPAGE_only	51	53	245	16.192122	4.253222	chr22	26536554	26536678	SINE|MIR|MIR1_Amn	+	chr22	26535894	26540871	TPST2|ENST00000445720.1	-	26535894,26540788	26536486,26540871	0.742857
esophagus_squamous_epithelium_female_adult_51_years	chr8	12488586	12488621	12488620	-	High_confidence	26	26	138	9.120460	6.048539	chr8	12485575	12493402	LTR|ERV1|HERVE-int	-	chr8	12487600	12488644	STRG.38172.3	-	12487600,12488290	12487908,12488644	0.789855
esophagus_squamous_epithelium_female_adult_51_years	chrX	47179145	47179162	47179158	+	High_confidence	4	5	16	1.057445	3.125000	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr1	153001946	153002020	153001946	+	High_confidence	10	10	56	3.701056	4.765131	chr1	153001909	153001987	SINE|MIR|MIR3	-	chr1	153001748	153002400	SPRR3|ENST00000495845.1	+	153001748,153001945	153001793,153002400	0.821429
esophagus_squamous_epithelium_female_adult_51_years	chr4	79206659	79206695	79206694	+	RAMPAGE_only	4	4	15	0.991354	3.182006	chr4	79206338	79206927	LTR|ERV1|LTR10C	+	chr4	79197540	79308655	LINC01088|ENST00000512130.5	+	79197540,79306690,79308272	79197644,79306728,79308655	0.866667
esophagus_squamous_epithelium_female_adult_51_years	chr9	73158140	73158196	73158174	+	High_confidence	4	5	22	1.453986	3.584184	chr9	73158106	73158195	LINE|L2|L2c	+	chr9	73157653	73170393	ANXA1|ENST00000376911.1	+	73157653,73158694,73159328,73160262,73160802,73162781,73163475,73165115,73166096,73167496,73169031,73170050	73158601,73158803,73159423,73160376,73160893,73162861,73163532,73165209,73166192,73167555,73169154,73170393	0.863636
esophagus_squamous_epithelium_female_adult_51_years	chr1	209429120	209429405	209429120	+	High_confidence	44	44	433	28.617097	5.579562	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.909931
esophagus_squamous_epithelium_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	44	44	45	2.974063	4.544326	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.933333
esophagus_squamous_epithelium_female_adult_51_years	chr19	3062922	3062983	3062922	-	High_confidence	33	35	105	6.939481	5.005311	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.971429
esophagus_squamous_epithelium_female_adult_51_years	chr8	9188188	9188210	9188188	+	High_confidence	3	3	8	0.528722	2.807355	chr8	9188163	9188460	LINE|L2|L2b	-	chr8	9188958	9203126	AC022784.1|ENST00000649571.1	+	9188958,9189347,9198923,9202498	9189046,9189586,9198991,9203126	0.750000
esophagus_squamous_epithelium_female_adult_51_years	chr3	139344537	139344548	139344547	+	High_confidence	21	21	33	2.180980	3.889050	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.909091
esophagus_squamous_epithelium_female_adult_51_years	chr8	129786285	129786306	129786300	-	High_confidence	5	5	15	0.991354	3.240224	chr8	129786052	129786345	SINE|Alu|AluSg7	+	chr8	129748195	129786888	GSDMC|ENST00000276708.8	-	129748195,129749451,129749989,129750430,129751541,129751861,129752105,129752697,129760544,129762625,129765627,129776101,129777367,129786010	129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752820,129760589,129762731,129765793,129776285,129777591,129786888	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr5	34244730	34244779	34244760	-	High_confidence	4	4	10	0.660903	2.921928	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.700000
esophagus_squamous_epithelium_female_adult_51_years	chr19	55069579	55069622	55069621	-	High_confidence	3	3	13	0.859174	2.931209	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55044323	55069546	RDH13|NM_138412.3	-	55044323,55047386,55048328,55048658,55056652,55059156,55064295,55069321	55045309,55047488,55048541,55048763,55056808,55059275,55064412,55069546	0.769231
esophagus_squamous_epithelium_female_adult_51_years	chr17	60887052	60887094	60887070	+	High_confidence	5	5	22	1.453986	3.697846	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr18	9588166	9588181	9588171	-	RAMPAGE_only	6	6	18	1.189625	3.572431	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9577063	9595061	PPP4R1|ENST00000580583.5	-	9577063,9584514,9584720,9588088,9588710,9593767,9595017	9577191,9584580,9584828,9588235,9588853,9593874,9595061	0.611111
esophagus_squamous_epithelium_female_adult_51_years	chr1	11058814	11058830	11058814	-	RAMPAGE_only	4	4	11	0.726993	2.550341	chr1	11058682	11058785	SINE|MIR|MIRc	-	chr1	11054588	11060024	SRM|ENST00000376957.6	-	11054588,11054961,11055780,11056010,11056603,11058799,11059224,11059776	11054885,11055084,11055926,11056094,11056757,11058892,11059345,11060024	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr9	39809856	39809865	39809858	-	High_confidence	8	14	24	1.586167	3.480084	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.666667
esophagus_squamous_epithelium_female_adult_51_years	chr10	103744172	103744197	103744172	+	RAMPAGE_only	10	10	34	2.247070	3.795811	chr10	103744149	103744452	SINE|Alu|AluSp	-	chr10	103745965	103755423	SH3PXD2A-AS1|ENST00000627886.2	+	103745965,103746982,103749781,103753843	103746159,103747096,103749920,103755423	0.970588
esophagus_squamous_epithelium_female_adult_51_years	chr3	52534908	52534940	52534908	-	High_confidence	1	1	9	0.594813	3.000000	chr3	52534822	52534878	LINE|L2|L2b	-	chr3	52524469	52535006	NT5DC2|ENST00000492555.5	-	52524469,52524816,52524962,52525208,52527293,52527616,52527828,52528012,52528182,52528636,52528860,52529149,52534350	52524731,52524881,52525103,52525295,52527375,52527718,52527931,52528073,52528311,52528692,52528935,52529334,52535006	0.888889
esophagus_squamous_epithelium_female_adult_51_years	chr10	34973959	34974007	34973990	+	High_confidence	17	17	91	6.014217	5.133363	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34973993	34975576	STRG.46235.4	+	34973993,34974193	34974088,34975576	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr19	51063609	51063615	51063609	-	RAMPAGE_only	3	3	6	0.396542	2.584963	chr19	51063472	51063654	SINE|MIR|MIRb	+	chr19	51056205	51064884	KLK13|ENST00000601975.5	-	51056205,51058537,51059744,51060432,51064597	51056775,51058674,51060093,51060619,51064884	0.833333
esophagus_squamous_epithelium_female_adult_51_years	chr11	3477051	3477079	3477067	-	High_confidence	20	20	76	5.022862	4.710281	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3476090	3477074	STRG.48706.1	-	3476090,3476942	3476373,3477074	0.960526
esophagus_squamous_epithelium_female_adult_51_years	chr20	3795740	3795789	3795763	+	High_confidence	5	5	26	1.718348	3.440636	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr17	2975606	2975661	2975606	+	High_confidence	9	9	62	4.097598	5.097432	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975674	3020675	STRG.64584.3	+	2975674,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476	2975775,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020675	0.951613
esophagus_squamous_epithelium_female_adult_51_years	chr15	51360222	51360241	51360222	+	High_confidence	4	4	8	0.528722	2.500000	chr15	51360002	51360808	LTR|ERV1|HERV17-int	+	chr15	51360253	51384414	GLDN|ENST00000559317.5	+	51360253,51377448,51383435,51383784	51360537,51377500,51383453,51384414	0.875000
esophagus_squamous_epithelium_female_adult_51_years	chr12	14665626	14665636	14665635	+	High_confidence	14	22	48	3.172334	4.335776	chr12	14665652	14665749	LINE|L2|L2a	+	chr12	14665654	14757963	AC010168.1|ENST00000501178.2	+	14665654,14665858,14672265,14718034,14757594	14665697,14666013,14672314,14718075,14757963	0.979167
esophagus_squamous_epithelium_female_adult_51_years	chr1	166850282	166850310	166850285	+	RAMPAGE_only	3	3	13	0.859174	2.855389	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.923077
esophagus_squamous_epithelium_female_adult_51_years	chr1	52914056	52914057	52914056	-	RAMPAGE_only	7	7	7	0.462632	2.521641	chr1	52913984	52914299	LINE|L2|L2b	-	chr1	52896231	52921703	ECHDC2|ENST00000371520.5	-	52896231,52897436,52899173,52904645,52905033,52907867,52911565,52911722,52913894,52921482	52896597,52897484,52899224,52904833,52905090,52907954,52911653,52912021,52914095,52921703	0.571429
esophagus_squamous_epithelium_female_adult_51_years	chr1	171129808	171129849	171129841	-	High_confidence	12	17	59	3.899327	4.784898	chr1	171129628	171130038	LTR|ERVL-MaLR|MSTB	-	chr1	171120296	171129836	STRG.4787.1	-	171120296,171121749,171129713	171120556,171121863,171129836	0.779661
esophagus_squamous_epithelium_female_adult_51_years	chr10	114515783	114515784	114515783	+	High_confidence	146	149	172	11.367530	5.570605	chr10	114515587	114516019	LTR|ERVL-MaLR|MLT1C	+	chr10	114516116	114516661	STRG.48171.1	+	114516116	114516661	0.680233
esophagus_squamous_epithelium_female_adult_51_years	chr1	9743890	9743891	9743890	-	RAMPAGE_only	7	7	10	0.660903	2.921928	chr1	9743549	9743856	SINE|Alu|AluJo	-	chr1	9729027	9751581	CLSTN1|ENST00000435891.5	-	9729027,9731205,9731760,9733400,9733971,9734947,9735466,9735884,9741093,9743883,9744394,9749460,9749763,9751472	9730705,9731390,9731896,9733546,9734142,9735174,9735615,9736042,9741256,9744005,9744643,9749646,9749913,9751581	0.900000
esophagus_squamous_epithelium_female_adult_51_years	chr21	13876404	13876405	13876404	-	RAMPAGE_only	13	13	14	0.925264	3.026987	chr21	13876110	13876852	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843132	13885096	STRG.73567.5	-	13843132,13844021,13845004,13846012,13846758,13848089,13859505	13843432,13844135,13845274,13846141,13847730,13859426,13885096	0.928571
esophagus_squamous_epithelium_female_adult_51_years	chrX	53220892	53220900	53220892	-	High_confidence	3	3	8	0.528722	2.521641	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53217852	53221818	KDM5C|ENST00000467093.1	-	53217852,53218275,53220838,53221687	53217966,53218398,53220916,53221818	0.500000
esophagus_squamous_epithelium_female_adult_51_years	chr11	17291237	17291305	17291304	+	RAMPAGE_only	9	9	34	2.247070	4.331977	chr11	17291264	17291560	SINE|Alu|AluSx	+	chr11	17295321	17331523	NUCB2|ENST00000458064.6	+	17295321,17296103,17301743,17309571,17310824,17311192,17311871,17312027,17330126,17330901,17331411	17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17330297,17330983,17331523	0.970588
esophagus_squamous_epithelium_female_adult_51_years	chr17	4852448	4852464	4852463	+	RAMPAGE_only	5	5	18	1.189625	3.410417	chr17	4852316	4852553	LINE|L2|L2c	-	chr17	4833620	4885965	MINK1|ENST00000577021.1	+	4833620,4878316,4880983,4881113,4884362,4884911,4885482,4885910	4833640,4878382,4881040,4881257,4884473,4885002,4885613,4885965	0.833333
esophagus_squamous_epithelium_female_adult_51_years	chr1	34781489	34781512	34781489	+	High_confidence	2	3	10	0.660903	2.921928	chr1	34781455	34781569	SINE|MIR|MIRc	-	chr1	34781188	34786364	GJB3|ENST00000373366.2	+	34781188,34784737	34781778,34786364	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr3	33838232	33838325	33838268	+	RAMPAGE_only	6	7	46	3.040153	4.586183	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.891304
esophagus_squamous_epithelium_female_adult_51_years	chr1	195722378	195722382	195722381	-	High_confidence	723	723	1174	77.590004	5.907370	chr1	195721970	195723453	LTR|ERV1|LTR12C	-	chr1	195574538	195722365	STRG.5271.1	-	195574538,195690604,195721819	195574805,195690765,195722365	0.958262
esophagus_squamous_epithelium_female_adult_51_years	chr17	82081606	82081797	82081606	-	RAMPAGE_only	24	24	125	8.261287	5.041058	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr1	9097151	9097152	9097151	-	RAMPAGE_only	8	9	9	0.594813	2.500000	chr1	9097058	9097391	LTR|ERV1|MER110A	+	chr1	9037935	9093822	STRG.278.1	-	9037935,9038430,9038827,9039551,9039799,9040063,9041784,9047609,9057447,9058151,9085013,9093791	9038024,9038506,9038929,9039662,9039987,9040189,9041937,9047734,9057608,9058250,9085142,9093822	0.555556
esophagus_squamous_epithelium_female_adult_51_years	chr21	13889506	13889517	13889516	-	RAMPAGE_only	6	8	14	0.925264	2.873141	chr21	13888588	13890121	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843132	13901257	STRG.73567.4	-	13843132,13844021,13845004,13846012,13846758,13848089,13885282,13888557,13896944	13843432,13844135,13845274,13846141,13847730,13865783,13886990,13890683,13901257	0.857143
esophagus_squamous_epithelium_female_adult_51_years	chr6	157578743	157578744	157578743	+	High_confidence	43	44	50	3.304515	3.970073	chr6	157578549	157578926	LTR|ERVL-MaLR|THE1D	+	chr6	157578758	157673529	STRG.32463.3	+	157578758,157592987,157628348,157632833,157645736,157647258,157653524,157672723	157578844,157593146,157628486,157632882,157645839,157647368,157653627,157673529	0.980000
esophagus_squamous_epithelium_female_adult_51_years	chr5	55378147	55378148	55378147	+	RAMPAGE_only	9	10	10	0.660903	3.121928	chr5	55377896	55378193	LTR|ERVL|MER21A	+	chr5	55308000	55425106	MTREX|ENST00000506750.5	+	55308000,55327715,55328698,55340009,55341680,55343330,55344521,55345093,55347012,55349572,55350918,55353167,55358572,55366724,55378313,55379126,55387973,55397415,55400232,55405424,55410523,55414181,55415969,55422877,55424719	55308147,55327778,55328811,55340184,55341771,55343455,55344620,55345196,55347144,55349652,55351029,55353269,55358698,55366875,55378486,55379195,55388102,55397526,55400421,55405588,55410629,55414238,55416132,55422982,55425106	0.900000
esophagus_squamous_epithelium_female_adult_51_years	chr1	166603680	166603727	166603680	+	High_confidence	11	13	53	3.502786	4.866162	chr1	166603525	166603837	SINE|Alu|AluSz	+	chr1	166603915	166625238	FMO9P|ENST00000477875.6	+	166603915,166604759,166612459,166620798,166621869,166623643,166624680	166603984,166604857,166612603,166620987,166622032,166623786,166625238	0.584906
esophagus_squamous_epithelium_female_adult_51_years	chr11	73200411	73200442	73200411	+	RAMPAGE_only	8	10	57	3.767147	4.193004	chr11	73200100	73200588	LINE|CR1|L3	+	chr11	73204976	73205282	STRG.50536.1	+	73204976	73205282	0.877193
esophagus_squamous_epithelium_female_adult_51_years	chr17	51006087	51006110	51006087	-	RAMPAGE_only	5	6	13	0.859174	2.968919	chr17	51005881	51006041	DNA|hAT-Charlie|Charlie17a	-	chr17	50996228	51001745	SPAG9|ENST00000513827.5	-	50996228,50998443,50999660,51001714	50996694,50998617,50999717,51001745	0.923077
esophagus_squamous_epithelium_female_adult_51_years	chr21	28090088	28090132	28090097	+	High_confidence	17	17	55	3.634966	4.730915	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28089888	28102790	LINC01697|ENST00000423808.2	+	28089888,28102549	28090521,28102790	0.981818
esophagus_squamous_epithelium_female_adult_51_years	chr12	53464751	53464774	53464773	+	RAMPAGE_only	2	3	7	0.462632	2.584963	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.571429
esophagus_squamous_epithelium_female_adult_51_years	chr7	2242922	2242923	2242922	+	High_confidence	20	20	20	1.321806	3.446439	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr1	154975505	154975546	154975524	+	High_confidence	7	7	24	1.586167	3.516028	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.750000
esophagus_squamous_epithelium_female_adult_51_years	chr3	24019043	24019046	24019043	+	RAMPAGE_only	2	2	7	0.462632	2.521641	chr3	24018754	24020004	LTR|ERV1|LTR2752	-	chr3	24151323	24189956	LOC101927854|NR_121667.1	+	24151323,24173783,24177949,24189574	24151400,24173904,24178012,24189956	0.857143
esophagus_squamous_epithelium_female_adult_51_years	chr3	50185887	50185909	50185892	+	RAMPAGE_only	3	3	9	0.594813	3.000000	chr3	50185763	50185908	SINE|MIR|MIR1_Amn	-	chr3	50159018	50189073	SEMA3F|ENST00000434342.5	+	50159018,50159574,50173792,50174051,50174230,50176767,50182283,50182643,50182903,50183185,50183419,50184591,50185442,50185665,50185888,50186280,50186612,50187704	50159288,50159734,50173953,50174114,50174350,50176861,50182403,50182783,50183018,50183255,50183564,50184814,50185531,50185707,50186046,50186348,50186746,50189073	0.888889
esophagus_squamous_epithelium_female_adult_51_years	chr17	59620040	59620080	59620072	+	High_confidence	3	3	25	1.652257	3.212879	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr13	29553765	29553791	29553767	-	RAMPAGE_only	4	8	13	0.859174	3.546594	chr13	29553624	29553773	LINE|CR1|L3b	+	chr13	29509409	29595688	SLC7A1|ENST00000380752.9	-	29509409,29516137,29517143,29517572,29519446,29522316,29523265,29524131,29530537,29532823,29535818,29553760,29595415	29514583,29516246,29517310,29517790,29519549,29522456,29523488,29524253,29530712,29532982,29536202,29553860,29595688	0.923077
esophagus_squamous_epithelium_female_adult_51_years	chr11	73217596	73217645	73217644	+	High_confidence	14	14	54	3.568876	4.773044	chr11	73217526	73217658	LINE|L2|L2b	-	chr11	73218297	73235932	P2RY2|ENST00000393597.6	+	73218297,73227980,73234155	73218432,73228175,73235932	0.888889
esophagus_squamous_epithelium_female_adult_51_years	chr15	34988764	34988768	34988767	-	High_confidence	5	5	12	0.793084	3.095795	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.583333
esophagus_squamous_epithelium_female_adult_51_years	chr10	84142698	84142737	84142736	+	RAMPAGE_only	4	5	15	0.991354	2.999581	chr10	84142771	84142861	DNA|hAT-Charlie|Charlie4z	+	chr10	84139439	84153245	GHITM|ENST00000372134.5	+	84139439,84141461,84142654,84143994,84144874,84148729,84150054,84150708,84152263	84139593,84141629,84142754,84144106,84145016,84148838,84150243,84150880,84153245	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chrX	73837441	73837486	73837466	-	RAMPAGE_only	3	5	16	1.057445	3.139572	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.937500
esophagus_squamous_epithelium_female_adult_51_years	chr9	92077036	92077037	92077036	-	High_confidence	8	12	12	0.793084	3.251629	chr9	92072526	92078223	LTR|ERV1|HERVH-int	+	chr9	92059178	92077768	STRG.43541.7	-	92059178,92067965,92077090	92059308,92068098,92077768	0.666667
esophagus_squamous_epithelium_female_adult_51_years	chr8	12522766	12522814	12522813	+	High_confidence	13	16	65	4.295869	4.467331	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12522793	12567080	STRG.38179.2	+	12522793,12565885	12522846,12567080	0.907692
esophagus_squamous_epithelium_female_adult_51_years	chr11	123061201	123061328	123061322	-	High_confidence	57	71	266	17.580018	5.195830	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.988722
esophagus_squamous_epithelium_female_adult_51_years	chr9	113375472	113375495	113375494	-	High_confidence	6	6	11	0.726993	2.646439	chr9	113375358	113375529	SINE|MIR|MIR3	-	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	0.909091
esophagus_squamous_epithelium_female_adult_51_years	chr12	64293377	64293380	64293379	-	High_confidence	13	18	21	1.387896	4.021928	chr12	64287349	64293377	LINE|L1|L1PA2	-	chr12	64266982	64293383	C12orf56|ENST00000536975.5	-	64266982,64270535,64274900,64275297,64277679,64284663,64285953,64293280	64267288,64270714,64274975,64275372,64277803,64284753,64286060,64293383	0.857143
esophagus_squamous_epithelium_female_adult_51_years	chr7	157293608	157293614	157293613	-	High_confidence	6	6	10	0.660903	2.921928	chr7	157293504	157293902	LTR|ERV1|LTR54	+	chr7	157293054	157293539	STRG.37754.1	-	157293054	157293539	0.500000
esophagus_squamous_epithelium_female_adult_51_years	chr9	20658607	20658608	20658607	+	High_confidence	13	14	19	1.255716	3.149673	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658335	20694520	STRG.41822.1	+	20658335,20694519	20658826,20694520	0.736842
esophagus_squamous_epithelium_female_adult_51_years	chr3	150575758	150575759	150575758	+	RAMPAGE_only	8	8	12	0.793084	3.251629	chr3	150575806	150576097	SINE|Alu|AluSz	+	chr3	150568031	150584234	EIF2A|ENST00000465535.1	+	150568031,150568175,150571957,150575648,150583199,150583845	150568046,150568292,150572529,150575762,150583265,150584234	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr8	126554322	126554337	126554327	-	RAMPAGE_only	3	3	11	0.726993	3.459432	chr8	126554033	126554306	SINE|Alu|AluSx1	-	chr8	126552441	126558393	FAM84B|ENST00000304916.3	-	126552441,126558033	126557485,126558393	0.909091
esophagus_squamous_epithelium_female_adult_51_years	chrX	19349995	19350022	19350021	+	RAMPAGE_only	8	8	18	1.189625	3.086049	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19352828	19355445	PDHA1|ENST00000479146.1	+	19352828,19354490,19355348	19353173,19354583,19355445	0.888889
esophagus_squamous_epithelium_female_adult_51_years	chr17	48096124	48096125	48096124	-	RAMPAGE_only	6	6	8	0.528722	3.000000	chr17	48095883	48096178	SINE|Alu|AluSx	-	chr17	48075088	48100582	CBX1|ENST00000444685.1	-	48075088,48076000,48076864,48095714,48100530	48075100,48076178,48077041,48095839,48100582	0.625000
esophagus_squamous_epithelium_female_adult_51_years	chr7	107580245	107580267	107580264	+	High_confidence	430	432	1790	118.301625	6.160618	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.969832
esophagus_squamous_epithelium_female_adult_51_years	chr17	7013027	7013071	7013027	+	High_confidence	8	8	33	2.180980	3.045177	chr17	7012918	7013141	SINE|Alu|AluSx	+	chr17	7013230	7014520	RNASEK|ENST00000552321.2	+	7013230,7013665,7014144	7013516,7013742,7014520	0.848485
esophagus_squamous_epithelium_female_adult_51_years	chr12	48489743	48489770	48489746	+	High_confidence	7	7	17	1.123535	2.875000	chr12	48489725	48490021	SINE|Alu|AluSx	-	chr12	48489570	48496376	STRG.53573.2	+	48489570,48490811,48492946,48494797,48496180	48489864,48490836,48492995,48494979,48496376	0.941176
esophagus_squamous_epithelium_female_adult_51_years	chr19	9140390	9140428	9140393	+	High_confidence	20	20	59	3.899327	4.636715	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.966102
esophagus_squamous_epithelium_female_adult_51_years	chr10	65570509	65570522	65570509	+	High_confidence	3	3	10	0.660903	2.947703	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.600000
esophagus_squamous_epithelium_female_adult_51_years	chr5	96171869	96171925	96171883	-	High_confidence	4	7	35	2.313160	3.921721	chr5	96169217	96171958	LTR|ERV1|HERVH-int	-	chr5	96165518	96172076	STRG.26134.1	-	96165518,96170071,96171797	96166159,96170257,96172076	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr10	103746763	103746809	103746765	+	High_confidence	19	37	170	11.235350	6.004930	chr10	103746609	103747070	LINE|L2|L2b	+	chr10	103746778	103755409	SH3PXD2A-AS1|NR_038940.1	+	103746778,103749781,103753843	103747096,103749920,103755409	0.923529
esophagus_squamous_epithelium_female_adult_51_years	chr17	41521747	41521769	41521747	-	High_confidence	6	6	19	1.255716	3.576618	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41513745	41521774	KRT15|ENST00000474031.5	-	41513745,41515884,41516103,41516807,41518329,41521684	41515692,41516010,41516265,41516964,41518461,41521774	0.736842
esophagus_squamous_epithelium_female_adult_51_years	chr1	89385469	89385675	89385672	+	RAMPAGE_only	304	321	1655	109.379435	5.393612	chr1	89385541	89385832	SINE|Alu|AluSz	-	chr1	89364057	89386461	GBP6|ENST00000370456.4	+	89364057,89368528,89369545,89378102,89378416,89380385,89381693,89382663,89383651,89384092,89385229	89364127,89368741,89369673,89378212,89378613,89380631,89381974,89382876,89383754,89384286,89386461	0.995166
esophagus_squamous_epithelium_female_adult_51_years	chr9	37471492	37471502	37471501	-	RAMPAGE_only	6	6	12	0.793084	3.277613	chr9	37471356	37471648	LTR|ERV1|MER34A	+	chr9	37438101	37465410	ZBTB5|NM_014872.2	-	37438101,37465214	37442555,37465410	0.500000
esophagus_squamous_epithelium_female_adult_51_years	chr2	17441935	17441992	17441959	-	High_confidence	16	16	74	4.890682	5.173649	chr2	17441102	17442030	LINE|L1|L1PBa1	-	chr2	17433679	17441940	STRG.7424.1	-	17433679,17441770	17434146,17441940	0.500000
esophagus_squamous_epithelium_female_adult_51_years	chr1	33021402	33021456	33021455	-	RAMPAGE_only	22	23	62	4.097598	4.838456	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.951613
esophagus_squamous_epithelium_female_adult_51_years	chr9	37426594	37426628	37426627	+	RAMPAGE_only	3	3	8	0.528722	2.807355	chr9	37426667	37426970	SINE|Alu|AluSx3	+	chr9	37427705	37436989	GRHPR|ENST00000497693.1	+	37427705,37436660	37432138,37436989	0.875000
esophagus_squamous_epithelium_female_adult_51_years	chr18	31364236	31364242	31364241	-	RAMPAGE_only	3	3	8	0.528722	2.750000	chr18	31363885	31364336	LTR|ERVL|LTR16C	-	chr18	31343367	31353936	DSG1-AS1|NR_110789.1	-	31343367,31347719,31353899	31343698,31347820,31353936	0.500000
esophagus_squamous_epithelium_female_adult_51_years	chr8	11864404	11864432	11864431	-	RAMPAGE_only	4	4	12	0.793084	3.084963	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr19	12800921	12801038	12800921	-	High_confidence	5	5	36	2.379251	4.537845	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.972222
esophagus_squamous_epithelium_female_adult_51_years	chr19	46927466	46927467	46927466	+	RAMPAGE_only	39	46	50	3.304515	3.183431	chr19	46927388	46927549	LINE|L2|L2b	-	chr19	46918675	47005077	ARHGAP35|ENST00000404338.7	+	46918675,46937263,46987988,46989543,46999303,47000330	46922356,46937408,46988066,46989675,46999409,47005077	0.980000
esophagus_squamous_epithelium_female_adult_51_years	chr19	1148382	1148454	1148453	-	RAMPAGE_only	51	67	331	21.875887	5.183045	chr19	1148343	1148479	LINE|L2|L2b	+	chr19	1117395	1155623	STRG.69356.3	-	1117395,1119010,1119515,1119905,1122138,1122467,1122657,1122893,1123533,1123941,1127603,1147308,1149368,1154183,1155085	1117499,1119164,1119621,1120023,1122282,1122558,1122791,1123045,1123639,1124022,1127765,1147420,1149442,1154402,1155623	0.960725
esophagus_squamous_epithelium_female_adult_51_years	chr8	26366358	26366396	26366395	+	RAMPAGE_only	27	27	113	7.468203	3.945928	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr16	8842174	8842213	8842212	+	High_confidence	3	3	10	0.660903	2.725481	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.900000
esophagus_squamous_epithelium_female_adult_51_years	chr1	166850123	166850144	166850123	+	RAMPAGE_only	22	26	35	2.313160	3.868170	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr20	31566028	31566084	31566048	+	High_confidence	21	21	182	12.028433	5.713010	chr20	31566028	31566111	SINE|MIR|MIR3	+	chr20	31566056	31569252	HM13|ENST00000493364.1	+	31566056,31569119	31566295,31569252	0.576923
esophagus_squamous_epithelium_female_adult_51_years	chr2	231072211	231072270	231072254	+	RAMPAGE_only	7	7	31	2.048799	4.513153	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.935484
esophagus_squamous_epithelium_female_adult_51_years	chr17	82076525	82076526	82076525	-	RAMPAGE_only	7	7	7	0.462632	2.521641	chr17	82076254	82076887	LINE|L1|L1MEc	-	chr17	81511345	81523847	ACTG1|ENST00000575994.5	-	81511345,81511902,81512231,81523641	81511626,81512142,81512360,81523847	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr3	57560361	57560391	57560361	+	RAMPAGE_only	13	13	42	2.775792	4.013176	chr3	57560303	57560625	SINE|Alu|AluSq2	-	chr3	57556276	57566844	PDE12|ENST00000311180.8	+	57556276,57559309,57559561	57557687,57559388,57566844	0.952381
esophagus_squamous_epithelium_female_adult_51_years	chr4	8436138	8436182	8436138	+	High_confidence	75	77	136	8.988280	5.735431	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8436139	8439301	TRMT44|ENST00000532937.1	+	8436139,8438791	8436399,8439301	0.919118
esophagus_squamous_epithelium_female_adult_51_years	chr13	19244146	19244157	19244156	-	High_confidence	3	5	10	0.660903	3.121928	chr13	19243448	19245701	LINE|L1|L1PB1	+	chr13	19243563	19244126	STRG.55564.1	-	19243563	19244126	0.900000
esophagus_squamous_epithelium_female_adult_51_years	chr19	51350348	51350357	51350356	-	RAMPAGE_only	5	6	14	0.925264	3.085055	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345687	51348530	ETFB|ENST00000594361.1	-	51345687	51348530	0.500000
esophagus_squamous_epithelium_female_adult_51_years	chr10	5768356	5768381	5768380	-	RAMPAGE_only	3	3	12	0.793084	2.855389	chr10	5768371	5769005	LINE|L1|L1MB3	+	chr10	5765228	5769389	GDI2|ENST00000479928.1	-	5765228,5766240,5768212	5766152,5766638,5769389	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	290	354	712	47.056289	5.517595	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.985955
esophagus_squamous_epithelium_female_adult_51_years	chr6	159681872	159682026	159681926	-	RAMPAGE_only	16	16	122	8.063016	5.293912	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr19	51027569	51027668	51027667	-	High_confidence	167	175	1513	99.994614	7.362236	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.871117
esophagus_squamous_epithelium_female_adult_51_years	chr12	91179456	91179463	91179462	-	High_confidence	584	611	896	59.216903	6.322777	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.668527
esophagus_squamous_epithelium_female_adult_51_years	chr1	12409804	12409855	12409854	+	RAMPAGE_only	6	6	18	1.189625	3.641604	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.944444
esophagus_squamous_epithelium_female_adult_51_years	chr21	13899186	13899223	13899214	-	RAMPAGE_only	4	5	16	1.057445	3.323231	chr21	13898559	13899880	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843132	13901257	STRG.73567.10	-	13843132,13844021,13845004,13846012,13846758,13896769	13843432,13844135,13845274,13846141,13877225,13901257	0.937500
esophagus_squamous_epithelium_female_adult_51_years	chr3	169447783	169447863	169447789	+	High_confidence	17	20	96	6.344668	5.118358	chr3	169447527	169447947	LINE|L2|L2c	-	chr3	169447866	169477052	LOC105374205|NR_134932.1	+	169447866,169463943,169467033,169470144,169476885	169447935,169464122,169467100,169470197,169477052	0.947917
esophagus_squamous_epithelium_female_adult_51_years	chr19	9700673	9700674	9700673	-	High_confidence	323	337	369	24.387318	4.268389	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9689923	9700672	STRG.69712.2	-	9689923,9693693,9694778,9696093,9700000	9691269,9693820,9694867,9696248,9700672	0.978320
esophagus_squamous_epithelium_female_adult_51_years	chr9	92077076	92077077	92077076	-	High_confidence	9	10	10	0.660903	2.947703	chr9	92072526	92078223	LTR|ERV1|HERVH-int	+	chr9	92059178	92077768	STRG.43541.7	-	92059178,92067965,92077090	92059308,92068098,92077768	0.800000
esophagus_squamous_epithelium_female_adult_51_years	chr19	5852526	5852527	5852526	+	High_confidence	26	27	37	2.445341	4.127987	chr19	5852530	5852959	LTR|ERV1|HERVH-int	+	chr19	5852278	5858082	STRG.69575.1	+	5852278,5854560,5857615	5852673,5854662,5858082	0.891892
esophagus_squamous_epithelium_female_adult_51_years	chr18	9588109	9588139	9588138	-	RAMPAGE_only	5	6	12	0.793084	2.522055	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9547712	9614505	PPP4R1|ENST00000285124.12	-	9547712,9549196,9550051,9550277,9553321,9557220,9559418,9561979,9562921,9563377,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9595017,9614225,9614477	9547952,9549338,9550186,9550398,9553422,9557382,9559604,9562075,9563046,9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9595102,9614270,9614505	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr20	37382673	37382698	37382673	+	High_confidence	5	5	12	0.793084	2.732159	chr20	37382563	37382753	SINE|MIR|MIRb	-	chr20	37382603	37405432	SRC|ENST00000358208.8	+	37382603,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.750000
esophagus_squamous_epithelium_female_adult_51_years	chr21	13899092	13899099	13899092	-	RAMPAGE_only	4	4	9	0.594813	2.725481	chr21	13898559	13899880	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843132	13901257	STRG.73567.10	-	13843132,13844021,13845004,13846012,13846758,13896769	13843432,13844135,13845274,13846141,13877225,13901257	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr22	50757120	50757147	50757120	+	High_confidence	2	2	8	0.528722	2.521641	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.625000
esophagus_squamous_epithelium_female_adult_51_years	chr7	76728870	76728902	76728870	-	High_confidence	2	2	8	0.528722	2.750000	chr7	76728485	76734513	LINE|L1|L1PA3	+	chr7	76610110	76728876	STRG.34988.1	-	76610110,76611453,76611721,76618182,76625521,76625999,76650397,76650755,76696973,76728465	76610215,76611591,76611813,76618300,76625683,76626215,76650576,76650882,76697073,76728876	0.625000
esophagus_squamous_epithelium_female_adult_51_years	chr4	139647322	139647358	139647357	-	High_confidence	111	117	168	11.103169	6.488334	chr4	139647213	139647611	LINE|L2|L2b	+	chr4	139617742	139647352	STRG.22785.3	-	139617742,139628541,139647248	139619101,139628675,139647352	0.583333
esophagus_squamous_epithelium_female_adult_51_years	chr12	48489577	48489578	48489577	+	High_confidence	6	6	8	0.528722	2.521641	chr12	48489441	48489716	SINE|Alu|AluSz6	-	chr12	48489570	48496376	STRG.53573.2	+	48489570,48490811,48492946,48494797,48496180	48489864,48490836,48492995,48494979,48496376	0.750000
esophagus_squamous_epithelium_female_adult_51_years	chr1	155058736	155058785	155058772	+	High_confidence	17	17	63	4.163688	5.040462	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.825397
esophagus_squamous_epithelium_female_adult_51_years	chr10	43596624	43596625	43596624	-	High_confidence	12	12	13	0.859174	3.084963	chr10	43596522	43597077	LTR|ERV1|LTR61	-	chr10	43585064	43596419	STRG.46391.1	-	43585064,43596294	43585427,43596419	0.769231
esophagus_squamous_epithelium_female_adult_51_years	chr16	2757801	2757891	2757813	+	High_confidence	6	9	71	4.692411	5.181218	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.901408
esophagus_squamous_epithelium_female_adult_51_years	chr17	59619888	59619923	59619894	+	High_confidence	1278	1571	5001	330.517556	4.842998	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.983603
esophagus_squamous_epithelium_female_adult_51_years	chr18	41632127	41632159	41632158	-	High_confidence	5	5	16	1.057445	3.189898	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41521337	41632124	KC6|ENST00000599934.1	-	41521337,41525354,41564798,41631999	41521496,41525526,41564898,41632124	0.500000
esophagus_squamous_epithelium_female_adult_51_years	chr1	195721922	195721942	195721941	+	RAMPAGE_only	4	5	9	0.594813	2.947703	chr1	195721489	195721970	LTR|ERVK|LTR14C	-	chr1	195737164	195738857	STRG.5266.1	+	195737164,195738115	195737508,195738857	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr9	131159447	131159463	131159447	+	RAMPAGE_only	6	7	18	1.189625	3.080501	chr9	131159497	131159575	LINE|L1|L1ME4a	+	chr9	131163099	131164549	NUP214|ENST00000489260.1	+	131163099,131163869,131164060	131163173,131163955,131164549	0.833333
esophagus_squamous_epithelium_female_adult_51_years	chr21	13880318	13880339	13880318	-	RAMPAGE_only	10	10	19	1.255716	3.721612	chr21	13879017	13880326	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843132	13885096	STRG.73567.5	-	13843132,13844021,13845004,13846012,13846758,13848089,13859505	13843432,13844135,13845274,13846141,13847730,13859426,13885096	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr17	45585824	45585834	45585833	-	High_confidence	4	4	9	0.594813	2.725481	chr17	45585678	45585861	SINE|Alu|AluSp	+	chr17	45509025	45586428	STRG.66326.4	-	45509025,45513184,45513867,45517177,45517860,45521306,45539162,45539891,45542763,45545604,45547726,45551439,45585701	45510200,45513289,45515525,45517282,45519518,45521425,45539243,45539963,45542835,45545676,45550732,45551537,45586428	0.666667
esophagus_squamous_epithelium_female_adult_51_years	chr2	70257706	70257707	70257706	+	High_confidence	7	7	8	0.528722	2.807355	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.875000
esophagus_squamous_epithelium_female_adult_51_years	chr2	174410329	174410372	174410371	+	High_confidence	29	29	79	5.221133	5.125586	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.784810
esophagus_squamous_epithelium_female_adult_51_years	chr2	176495470	176495491	176495470	+	RAMPAGE_only	225	239	500	33.045147	6.830460	chr2	176495430	176495588	SINE|Alu|AluJo	-	chr2	176465911	176588103	STRG.11816.1	+	176465911,176495472,176497713,176586032,176587918	176466028,176495570,176497795,176586092,176588103	0.630000
esophagus_squamous_epithelium_female_adult_51_years	chr6	118651542	118651564	118651563	-	High_confidence	5	5	15	0.991354	3.640224	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr5	93755845	93755885	93755869	-	High_confidence	4	4	16	1.057445	3.625000	chr5	93755381	93761065	LINE|L1|L1PB1	+	chr5	93618068	93756212	STRG.25824.5	-	93618068,93755659	93621129,93756212	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr17	75786606	75786645	75786616	+	RAMPAGE_only	13	13	76	5.022862	4.535181	chr17	75786575	75786885	SINE|Alu|AluSq2	+	chr17	75784854	75815221	STRG.67532.3	+	75784854,75791759,75809759,75812111,75812454,75813077,75813760,75815168	75784984,75792019,75809969,75812288,75812585,75813213,75813878,75815221	0.789474
esophagus_squamous_epithelium_female_adult_51_years	chr5	119420434	119420449	119420440	+	RAMPAGE_only	18	24	62	4.097598	4.979900	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.790323
esophagus_squamous_epithelium_female_adult_51_years	chr3	193837447	193837479	193837470	-	High_confidence	67	79	399	26.370027	6.514596	chr3	193837444	193837604	LTR|ERVL-MaLR|MLT1N2	+	chr3	193825234	193837561	STRG.19860.1	-	193825234,193832410,193833638,193837351	193832041,193833085,193833752,193837561	0.563910
esophagus_squamous_epithelium_female_adult_51_years	chr16	2205823	2205855	2205850	+	High_confidence	6	6	24	1.586167	3.621176	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.875000
esophagus_squamous_epithelium_female_adult_51_years	chr2	94207172	94207225	94207199	-	RAMPAGE_only	2	2	9	0.594813	2.750000	chr2	94206820	94207330	LTR|ERVL|LTR53B	+	chr2	94192120	94208698	STRG.9564.3	-	94192120,94199450,94202396,94208309	94199366,94199639,94202568,94208698	0.777778
esophagus_squamous_epithelium_female_adult_51_years	chr19	2028744	2028777	2028744	-	RAMPAGE_only	5	5	19	1.255716	3.614369	chr19	2028707	2028826	LINE|CR1|L3b	-	chr19	1985437	2015724	BTBD2|ENST00000255608.8	-	1985437,1986829,1987165,1987499,1990003,1990716,1993019,1997343,2015296	1986649,1986976,1987253,1987692,1990201,1990822,1993176,1997463,2015724	0.578947
esophagus_squamous_epithelium_female_adult_51_years	chr19	55280201	55280255	55280201	-	High_confidence	4	5	27	1.784438	3.352136	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr6	40867491	40867504	40867503	-	High_confidence	6	7	11	0.726993	3.321928	chr6	40861829	40868245	LTR|ERV1|HERVH-int	-	chr6	40857734	40867726	STRG.29439.1	-	40857734,40861326,40867389	40858753,40861432,40867726	0.818182
esophagus_squamous_epithelium_female_adult_51_years	chr2	173532873	173532942	173532873	+	High_confidence	5	5	37	2.445341	4.594456	chr2	173527289	173533317	LINE|L1|L1PA3	-	chr2	173532881	173698441	STRG.11651.1	+	173532881,173697719	173533339,173698441	0.918919
esophagus_squamous_epithelium_female_adult_51_years	chr2	113117970	113117976	113117970	+	High_confidence	25086	31422	46763	3090.580382	6.465798	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.947074
esophagus_squamous_epithelium_female_adult_51_years	chr2	215978476	215978496	215978495	-	RAMPAGE_only	6	6	12	0.793084	3.095795	chr2	215976650	215978919	LINE|L1|L1P2	+	chr2	215942804	216013613	MREG|ENST00000620139.4	-	215942804,215944110,215945570,215947022,215996305,216013232	215943739,215944997,215945734,215947113,215996465,216013613	0.916667
esophagus_squamous_epithelium_female_adult_51_years	chr1	34754777	34754799	34754798	+	High_confidence	26	35	67	4.428050	4.735710	chr1	34754671	34754841	SINE|MIR|MIR	-	chr1	34755046	34758512	GJB5|NM_005268.3	+	34755046,34757306	34755195,34758512	0.850746
esophagus_squamous_epithelium_female_adult_51_years	chr16	70561222	70561226	70561225	+	High_confidence	11	11	21	1.387896	3.321104	chr16	70561012	70561320	SINE|Alu|AluSx	-	chr16	70561348	70567541	SF3B3|ENST00000563739.5	+	70561348,70563875,70565064,70565367,70567410	70561784,70564050,70565270,70565524,70567541	0.904762
esophagus_squamous_epithelium_female_adult_51_years	chr9	116838419	116838467	116838466	+	High_confidence	30	31	87	5.749856	4.176111	chr9	116838426	116838730	SINE|Alu|AluSq2	-	chr9	116838226	116843751	STRG.44513.3	+	116838226,116841428,116842381	116839021,116841517,116843751	0.988506
esophagus_squamous_epithelium_female_adult_51_years	chr9	128921399	128921411	128921399	+	High_confidence	14	14	28	1.850528	3.633974	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.964286
esophagus_squamous_epithelium_female_adult_51_years	chr1	195721832	195721833	195721832	+	RAMPAGE_only	59	59	83	5.485494	4.769202	chr1	195721489	195721970	LTR|ERVK|LTR14C	-	chr1	195737164	195738857	STRG.5266.1	+	195737164,195738115	195737508,195738857	0.915663
esophagus_squamous_epithelium_female_adult_51_years	chr16	30113026	30113048	30113026	-	High_confidence	4	4	12	0.793084	3.251629	chr16	30112890	30112998	DNA|hAT-Tip100|MER91C	-	chr16	30104809	30113537	GDPD3|ENST00000360688.3	-	30104809,30108212,30108372,30111387,30112131,30112305,30112522,30112657,30113339	30105009,30108264,30108432,30111521,30112221,30112424,30112568,30113064,30113537	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr13	19244012	19244048	19244012	-	High_confidence	4	5	14	0.925264	2.777363	chr13	19243448	19245701	LINE|L1|L1PB1	+	chr13	19243563	19244126	STRG.55564.1	-	19243563	19244126	0.785714
esophagus_squamous_epithelium_female_adult_51_years	chr17	47067498	47067518	47067498	-	High_confidence	35	38	182	12.028433	5.343367	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.945055
esophagus_squamous_epithelium_female_adult_51_years	chr17	75742732	75742754	75742732	+	High_confidence	3	3	25	1.652257	3.288320	chr17	75742779	75742995	SINE|MIR|MIRb	+	chr17	75742423	75749045	ITGB4|ENST00000584025.1	+	75742423,75743712,75746263,75748840	75742761,75743861,75746375,75749045	0.680000
esophagus_squamous_epithelium_female_adult_51_years	chr14	95146586	95146610	95146599	-	RAMPAGE_only	4	4	9	0.594813	2.750000	chr14	95146085	95146813	LTR|ERV1|LTR27C	+	chr14	95086228	95141718	DICER1|ENST00000393063.5	-	95086228,95091033,95091202,95093887,95095824,95099779,95103345,95105070,95105677,95106040,95107607,95107879,95108323,95111316,95112171,95113091,95115666,95116452,95117621,95124195,95126579,95129471,95130057,95131508,95132514,95133314,95140658,95141682	95090663,95091109,95091365,95094156,95096713,95099935,95104126,95105246,95105783,95106223,95107761,95108093,95108503,95111456,95112247,95113224,95115821,95116695,95117754,95124668,95126748,95129632,95130192,95131639,95132677,95133503,95140759,95141718	0.888889
esophagus_squamous_epithelium_female_adult_51_years	chr8	100565688	100565704	100565703	-	High_confidence	14	14	34	2.247070	4.594672	chr8	100565495	100565873	LTR|ERVL-MaLR|MLT1A1	-	chr8	100520887	100565688	STRG.39581.2	-	100520887,100527844,100529522,100532355,100533208,100565573	100522771,100528003,100529860,100532460,100533311,100565688	0.500000
esophagus_squamous_epithelium_female_adult_51_years	chr14	80231057	80231058	80231057	-	High_confidence	1696	1703	1778	117.508541	7.559086	chr14	80230830	80231256	LTR|ERVL|MLT2A1	-	chr14	80202818	80231054	STRG.58852.7	-	80202818,80206230,80211250,80215971	80203288,80206338,80211525,80231054	0.929696
esophagus_squamous_epithelium_female_adult_51_years	chr1	174239180	174239181	174239180	+	RAMPAGE_only	8	9	10	0.660903	2.725481	chr1	174233266	174239293	LINE|L1|L1PA2	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.800000
esophagus_squamous_epithelium_female_adult_51_years	chr22	26512099	26512111	26512099	-	High_confidence	4	4	11	0.726993	2.663533	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	0.909091
esophagus_squamous_epithelium_female_adult_51_years	chr1	160350217	160350229	160350217	+	High_confidence	9	9	19	1.255716	2.970840	chr1	160350194	160350231	LINE|RTE-BovB|MamRTE1	-	chr1	160350104	160355753	NCSTN|ENST00000424645.6	+	160350104,160351287,160351695,160352053,160352886,160353159,160354117,160355654	160350250,160351372,160351805,160352206,160352991,160353237,160354290,160355753	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr17	17686057	17686058	17686057	+	RAMPAGE_only	5	7	8	0.528722	2.521641	chr17	17685599	17686175	LINE|L2|L2b	+	chr17	17682494	17793143	RAI1|ENST00000471135.2	+	17682494,17683545,17724027,17792932	17682563,17683703,17724159,17793143	0.875000
esophagus_squamous_epithelium_female_adult_51_years	chr16	57641692	57641693	57641692	+	RAMPAGE_only	5	5	8	0.528722	2.500000	chr16	57641565	57641864	SINE|Alu|AluSz6	-	chr16	57639517	57665032	ADGRG1|ENST00000540164.6	+	57639517,57641590,57650252,57651199,57653202,57653985,57655398,57655875,57656225,57656513,57657372,57659412,57660767,57661696,57663451	57639670,57641708,57650351,57651622,57653335,57654133,57655530,57655992,57656271,57656617,57657491,57659681,57660876,57661965,57665032	0.750000
esophagus_squamous_epithelium_female_adult_51_years	chr14	95146652	95146674	95146673	-	RAMPAGE_only	24	28	40	2.643612	4.238335	chr14	95146085	95146813	LTR|ERV1|LTR27C	+	chr14	95086228	95141718	DICER1|ENST00000393063.5	-	95086228,95091033,95091202,95093887,95095824,95099779,95103345,95105070,95105677,95106040,95107607,95107879,95108323,95111316,95112171,95113091,95115666,95116452,95117621,95124195,95126579,95129471,95130057,95131508,95132514,95133314,95140658,95141682	95090663,95091109,95091365,95094156,95096713,95099935,95104126,95105246,95105783,95106223,95107761,95108093,95108503,95111456,95112247,95113224,95115821,95116695,95117754,95124668,95126748,95129632,95130192,95131639,95132677,95133503,95140759,95141718	0.950000
esophagus_squamous_epithelium_female_adult_51_years	chr9	127561597	127561611	127561610	-	RAMPAGE_only	8	12	24	1.586167	4.055958	chr9	127561458	127561604	SINE|MIR|MIRb	-	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	0.583333
esophagus_squamous_epithelium_female_adult_51_years	chr12	10363950	10363970	10363964	+	High_confidence	7	7	16	1.057445	3.323231	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.812500
esophagus_squamous_epithelium_female_adult_51_years	chr14	103848782	103848814	103848813	-	High_confidence	14	20	71	4.692411	5.571861	chr14	103848808	103849048	SINE|MIR|MIRb	+	chr14	103733752	103848811	STRG.59356.1	-	103733752,103736002,103737693,103738678,103738885,103739823,103741789,103742653,103744611,103746372,103749793,103752999,103754069,103757649,103778744,103784794,103797370,103848271	103735195,103736202,103737860,103738812,103739023,103740593,103742291,103742823,103744716,103746553,103749934,103753196,103754244,103757751,103778821,103784914,103797518,103848811	0.901408
esophagus_squamous_epithelium_female_adult_51_years	chrX	152896665	152896671	152896670	+	RAMPAGE_only	5	5	10	0.660903	2.521928	chrX	152896538	152897159	LINE|L2|L2b	-	chrX	152898076	152959841	STRG.78359.7	+	152898076,152914444,152914709,152915137,152917130,152917284,152918064,152918982,152920327,152920706,152922172,152922719,152928574,152931671,152932872,152938073,152945266,152959698	152898238,152914523,152914833,152915203,152917169,152917362,152918154,152919081,152920411,152920748,152922256,152922809,152928661,152931776,152932971,152938163,152945464,152959841	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr21	29077437	29077489	29077486	+	High_confidence	8	9	27	1.784438	4.078419	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.814815
esophagus_squamous_epithelium_female_adult_51_years	chr17	1115411	1115412	1115411	-	High_confidence	4	4	6	0.396542	2.584963	chr17	1115307	1115433	LINE|L2|L2b	+	chr17	1072732	1115436	ABR|ENST00000570441.5	-	1072732,1073624,1079329,1083519,1091664,1100636,1115275	1072754,1073677,1079390,1083627,1091850,1100735,1115436	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr1	179877343	179877361	179877352	-	High_confidence	2	2	7	0.462632	2.584963	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179843930	179877772	STRG.4948.1	-	179843930,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877772	0.857143
esophagus_squamous_epithelium_female_adult_51_years	chr4	142474348	142474408	142474407	-	High_confidence	43	47	64	4.229779	4.943638	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.921875
esophagus_squamous_epithelium_female_adult_51_years	chr5	177883472	177883480	177883472	+	RAMPAGE_only	5	6	10	0.660903	3.121928	chr5	177883451	177883608	SINE|MIR|MIR	+	chr5	177875521	177884272	AC106795.1|ENST00000506672.5	+	177875521,177876531,177878643,177882368,177882651,177883666	177875860,177876688,177878848,177882530,177882752,177884272	0.900000
esophagus_squamous_epithelium_female_adult_51_years	chr9	123179170	123179187	123179170	-	RAMPAGE_only	2	2	9	0.594813	2.500000	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.888889
esophagus_squamous_epithelium_female_adult_51_years	chr16	10529555	10529904	10529800	-	RAMPAGE_only	21	25	247	16.324302	5.723128	chr16	10529648	10529961	SINE|Alu|AluSp	+	chr16	10528421	10580632	STRG.62572.2	-	10528421,10531690,10537927,10543569,10547539,10580548	10531653,10533092,10538074,10543660,10547677,10580632	0.995951
esophagus_squamous_epithelium_female_adult_51_years	chr3	57755421	57755448	57755421	+	High_confidence	4	4	10	0.660903	2.646439	chr3	57755311	57755437	SINE|MIR|MIRb	-	chr3	57755449	57757067	SLMAP|ENST00000481846.1	+	57755449,57756547	57755485,57757067	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr9	133276659	133276671	133276670	-	High_confidence	3	3	11	0.726993	2.521928	chr9	133276496	133276806	LINE|L1|L1MB3	+	chr9	133255601	133276651	STRG.45114.5	-	133255601,133258096,133259818,133261317,133262098,133276606	133257542,133258132,133259866,133261374,133262168,133276651	0.727273
esophagus_squamous_epithelium_female_adult_51_years	chr1	212232522	212232523	212232522	-	RAMPAGE_only	29	36	38	2.511431	4.426734	chr1	212232282	212232732	LTR|ERVL|MLT2A2	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	0.894737
esophagus_squamous_epithelium_female_adult_51_years	chr7	102637208	102637361	102637208	-	RAMPAGE_only	60	61	214	14.143323	3.971992	chr7	102637117	102637415	SINE|Alu|AluSc	+	chr7	102637024	102642791	UPK3BL|NM_001114403.2	-	102637024,102638713,102639122,102640203,102640611,102642629	102637633,102638834,102639199,102640414,102640773,102642791	0.985981
esophagus_squamous_epithelium_female_adult_51_years	chrX	152913821	152913840	152913821	+	High_confidence	3	3	9	0.594813	2.500000	chrX	152913773	152914030	SINE|MIR|MIRb	-	chrX	152914441	152973480	ZNF185|ENST00000318504.11	+	152914441,152914709,152915137,152917130,152917284,152918064,152918982,152920327,152920709,152922172,152931671,152932872,152938073,152945266,152959698,152963838,152965446,152967166,152969381,152970442,152971273	152914523,152914833,152915203,152917169,152917362,152918154,152919081,152920411,152920748,152922256,152931776,152932971,152938163,152945464,152959896,152963949,152965527,152967238,152969484,152970541,152973480	0.555556
esophagus_squamous_epithelium_female_adult_51_years	chr2	20217662	20217670	20217662	-	RAMPAGE_only	3	3	10	0.660903	2.846439	chr2	20217521	20217659	SINE|MIR|MIRc	-	chr2	20204001	20223388	SDC1|ENST00000482879.5	-	20204001,20205342,20223202	20204291,20205424,20223388	0.600000
esophagus_squamous_epithelium_female_adult_51_years	chr1	183590772	183590785	183590772	-	High_confidence	7	7	20	1.321806	3.616349	chr1	183590713	183590775	SINE|MIR|MIR3	+	chr1	183555724	183590743	STRG.5017.2	-	183555724,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590622	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590743	0.900000
esophagus_squamous_epithelium_female_adult_51_years	chr12	48489293	48489338	48489293	+	High_confidence	5	6	21	1.387896	3.421928	chr12	48489156	48489319	DNA|hAT-Tip100|MamTip3	+	chr12	48489570	48496376	STRG.53573.2	+	48489570,48490811,48492946,48494797,48496180	48489864,48490836,48492995,48494979,48496376	0.952381
esophagus_squamous_epithelium_female_adult_51_years	chr20	50267467	50267478	50267477	+	High_confidence	5	6	15	0.991354	2.950212	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.933333
esophagus_squamous_epithelium_female_adult_51_years	chr2	86482577	86482619	86482577	+	RAMPAGE_only	2	2	10	0.660903	3.321928	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86466348	86492712	STRG.9315.4	+	86466348,86470203,86474775,86477881,86478169,86478607,86480166,86481929,86482457,86483986,86484941,86485728,86489317,86489519,86490880,86492038	86466883,86470408,86474990,86478029,86478265,86478735,86480362,86482102,86482694,86484158,86485029,86485859,86489437,86489659,86491275,86492712	0.900000
esophagus_squamous_epithelium_female_adult_51_years	chr14	64053583	64053639	64053638	+	RAMPAGE_only	4	4	22	1.453986	3.663533	chr14	64053684	64053998	SINE|Alu|AluSz6	+	chr14	64003023	64078625	STRG.58055.7	+	64003023,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024256,64024911,64025129,64026578,64027483,64029894,64031015,64047999,64049610,64051556,64055943,64062750,64065431,64070644,64073967,64078465	64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64022863,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64048155,64049876,64053657,64056266,64062895,64065650,64070910,64074136,64078625	0.954545
esophagus_squamous_epithelium_female_adult_51_years	chr17	4143199	4143218	4143199	+	High_confidence	46	46	102	6.741210	4.842725	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.980392
esophagus_squamous_epithelium_female_adult_51_years	chr6	28354041	28354089	28354041	-	High_confidence	8	8	28	1.850528	3.528242	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329610	28354065	ZSCAN31|ENST00000444081.5	-	28329610,28336789,28337798,28353861	28329714,28336943,28337893,28354065	0.857143
esophagus_squamous_epithelium_female_adult_51_years	chr19	7642233	7642317	7642316	+	High_confidence	17	19	59	3.899327	4.727828	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.694915
esophagus_squamous_epithelium_female_adult_51_years	chr8	129786082	129786089	129786088	-	High_confidence	4	5	12	0.793084	2.913977	chr8	129786052	129786345	SINE|Alu|AluSg7	+	chr8	129748195	129786888	GSDMC|ENST00000276708.8	-	129748195,129749451,129749989,129750430,129751541,129751861,129752105,129752697,129760544,129762625,129765627,129776101,129777367,129786010	129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752820,129760589,129762731,129765793,129776285,129777591,129786888	0.916667
esophagus_squamous_epithelium_female_adult_51_years	chr2	113078001	113078003	113078002	+	RAMPAGE_only	21	25	35	2.313160	4.457575	chr2	113077919	113078146	LINE|L2|L2c	-	chr2	113111115	113134013	IL1RN|ENST00000409052.5	+	113111115,113112999,113120065,113121447,113127688,113129575,113131044,113132655,113133602	113111199,113113114,113120128,113121618,113127740,113129664,113131157,113133460,113134013	0.800000
esophagus_squamous_epithelium_female_adult_51_years	chr17	4187108	4187109	4187108	-	High_confidence	17	18	20	1.321806	3.684184	chr17	4187012	4187196	LINE|L1|L1PB2	-	chr17	4183525	4187109	ANKFY1|ENST00000574736.1	-	4183525,4183811,4184817,4186893	4183551,4183910,4185046,4187109	0.900000
esophagus_squamous_epithelium_female_adult_51_years	chr1	54200557	54200558	54200557	+	High_confidence	8	8	11	0.726993	2.646439	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.909091
esophagus_squamous_epithelium_female_adult_51_years	chr10	133369912	133370021	133370020	-	RAMPAGE_only	7	7	43	2.841883	4.340892	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.976744
esophagus_squamous_epithelium_female_adult_51_years	chr9	73154046	73154060	73154059	+	RAMPAGE_only	8	8	15	0.991354	2.950212	chr9	73153736	73154131	LINE|L2|L2c	-	chr9	73151901	73160338	ANXA1|ENST00000415424.5	+	73151901,73154197,73158521,73158694,73159328,73160262	73151924,73154340,73158601,73158803,73159423,73160338	0.800000
esophagus_squamous_epithelium_female_adult_51_years	chr3	134485443	134485450	134485443	-	High_confidence	3	4	8	0.528722	2.521641	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.625000
esophagus_squamous_epithelium_female_adult_51_years	chr12	10702260	10702261	10702260	-	High_confidence	12	12	12	0.793084	3.418296	chr12	10702238	10702535	SINE|Alu|AluSz	+	chr12	10699316	10702475	YBX3|ENST00000540975.5	-	10699316,10701253,10701959,10702411	10699654,10701353,10702134,10702475	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr16	14245647	14245648	14245647	+	RAMPAGE_only	6	6	8	0.528722	2.521641	chr16	14245645	14245696	SINE|tRNA|LFSINE_Vert	+	chr16	14079287	14266772	MRTFB|ENST00000318282.9	+	14079287,14140543,14210242,14212353,14213544,14217125,14218819,14234145,14240236,14245527,14246472,14248925,14251861,14252364,14258100,14260908	14079354,14140760,14210308,14212409,14213620,14217287,14218998,14234283,14240484,14245660,14247357,14249081,14252023,14252502,14258161,14266772	0.875000
esophagus_squamous_epithelium_female_adult_51_years	chr19	14491688	14491711	14491707	-	RAMPAGE_only	4	4	16	1.057445	3.506891	chr19	14491587	14491827	LINE|L2|L2	+	chr19	14477872	14496124	STRG.69960.2	-	14477872,14478051,14478683,14479411,14480304,14480592,14482688,14491655,14496036	14477988,14478567,14478765,14479524,14480485,14480778,14483006,14491743,14496124	0.937500
esophagus_squamous_epithelium_female_adult_51_years	chr12	119179243	119179333	119179243	+	High_confidence	4	4	26	1.718348	3.071035	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr22	35896669	35896689	35896687	-	RAMPAGE_only	15	26	51	3.370605	4.726370	chr22	35896673	35896791	LINE|L2|L2	+	chr22	35743982	35938897	RBFOX2|ENST00000359369.8	-	35743982,35745922,35746472,35750425,35756104,35759887,35761201,35761414,35765422,35768256,35778024,35781599,35809779,35938846	35744249,35745995,35746561,35750457,35756144,35760020,35761294,35761468,35765483,35768349,35778078,35781743,35810004,35938897	0.823529
esophagus_squamous_epithelium_female_adult_51_years	chr9	127451104	127451108	127451104	-	High_confidence	13	13	24	1.586167	3.464235	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.916667
esophagus_squamous_epithelium_female_adult_51_years	chr8	123179113	123179136	123179113	+	High_confidence	5	6	10	0.660903	2.725481	chr8	123179159	123179521	LTR|ERVL-MaLR|MSTD	+	chr8	123179046	123210079	FAM83A|NM_207006.2	+	123179046,123182025,123191802,123194023,123207156,123209425	123180229,123183336,123191970,123194148,123207416,123210079	0.500000
esophagus_squamous_epithelium_female_adult_51_years	chr2	130912845	130912846	130912845	+	High_confidence	4	4	7	0.462632	2.807355	chr2	130912814	130913132	DNA|TcMar-Tigger|MER44A	+	chr2	130912150	131040408	STRG.10414.5	+	130912150,130913985,130930951,130946508,131027944,131038852,131040015,131040260	130912379,130917498,130931257,130946635,131028084,131039032,131040192,131040408	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr18	14250295	14250334	14250295	+	RAMPAGE_only	5	5	24	1.586167	3.517894	chr18	14250135	14250316	LINE|L1|L1MC4	-	chr18	14244624	14258799	STRG.68149.8	+	14244624,14249431,14250287,14251968,14252293	14244784,14249485,14250407,14252140,14258799	0.958333
esophagus_squamous_epithelium_female_adult_51_years	chr3	217531	217567	217534	+	High_confidence	18	18	78	5.155043	4.927909	chr3	217318	217820	LINE|L2|L2a	-	chr3	217534	328223	CHL1|ENST00000449294.6	+	217534,244612,319682,325958,328166	217700,244692,319867,326064,328223	0.820513
esophagus_squamous_epithelium_female_adult_51_years	chr6	37320182	37320185	37320182	+	RAMPAGE_only	7	8	16	1.057445	3.272906	chr6	37320221	37320448	SINE|MIR|MIR	+	chr6	37257771	37332970	TBC1D22B|ENST00000373491.3	+	37257771,37269593,37279303,37282184,37282881,37284335,37287006,37291242,37312917,37313815,37316702,37317110,37331043	37257973,37269650,37279611,37282364,37282952,37284464,37287072,37291357,37313024,37313891,37316830,37317206,37332970	0.937500
esophagus_squamous_epithelium_female_adult_51_years	chr6	28354199	28354206	28354199	-	High_confidence	14	15	31	2.048799	4.116265	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.741935
esophagus_squamous_epithelium_female_adult_51_years	chr12	109591276	109591285	109591276	+	RAMPAGE_only	2	3	7	0.462632	2.584963	chr12	109591205	109591326	DNA|hAT-Ac|OldhAT1	+	chr12	109587860	109597262	MVK|ENST00000540353.1	+	109587860,109591240,109595027,109596425	109590861,109591357,109595181,109597262	0.857143
esophagus_squamous_epithelium_female_adult_51_years	chr3	94648032	94648063	94648041	+	High_confidence	2	4	15	0.991354	3.467720	chr3	94648059	94648919	LTR|ERVK|HERVK11D-int	+	chr3	94648067	94655851	STRG.16740.1	+	94648067,94650787,94655798	94648144,94651003,94655851	0.866667
esophagus_squamous_epithelium_female_adult_51_years	chr2	31254108	31254109	31254108	+	RAMPAGE_only	36	36	49	3.238424	5.027875	chr2	31254076	31254207	SINE|MIR|MIRc	-	chr2	31249266	31269447	STRG.8003.2	+	31249266,31254836,31260509,31261548,31266176	31249468,31254991,31260922,31261713,31269447	0.938776
esophagus_squamous_epithelium_female_adult_51_years	chr3	145698415	145698423	145698415	-	High_confidence	18	18	30	1.982709	4.351823	chr3	145698414	145698729	LTR|ERVL-MaLR|MLT1A0	+	chr3	145621851	145698410	STRG.18326.1	-	145621851,145625559,145645150,145650517,145698190	145621944,145625666,145645407,145650750,145698410	0.800000
esophagus_squamous_epithelium_female_adult_51_years	chr10	103890267	103890286	103890285	-	High_confidence	11	11	34	2.247070	3.861984	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103890386	STRG.47925.4	-	103882554,103889071,103890224	103882841,103889144,103890386	0.970588
esophagus_squamous_epithelium_female_adult_51_years	chr11	71745881	71745936	71745935	+	High_confidence	11	11	63	4.163688	4.711946	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745896	71747051	STRG.50447.2	+	71745896,71746570	71746012,71747051	0.984127
esophagus_squamous_epithelium_female_adult_51_years	chr1	89272850	89272887	89272859	-	High_confidence	9	9	43	2.841883	4.252453	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.976744
esophagus_squamous_epithelium_female_adult_51_years	chr21	13936002	13936075	13936074	-	RAMPAGE_only	4	4	21	1.387896	3.471354	chr21	13934252	13936999	Retroposon|SVA|SVA_A	-	chr21	13843132	13979997	STRG.73567.1	-	13843132,13844021,13845004,13846012,13846758,13904342,13907889,13909573,13910495,13911717,13915186,13916746,13917554,13925163,13932227,13933530,13939245,13940814,13945038,13951066,13951231,13954065,13967380,13969972,13971995	13843432,13844135,13845274,13846141,13846957,13907736,13908028,13909693,13910549,13911763,13915409,13916958,13917836,13925293,13932374,13938067,13939428,13940978,13945109,13951139,13951260,13962871,13967436,13970110,13979997	0.904762
esophagus_squamous_epithelium_female_adult_51_years	chr6	3076866	3076899	3076898	+	High_confidence	6	6	12	0.793084	3.251629	chr6	3076851	3076944	SINE|tRNA|LFSINE_Vert	-	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr5	140651851	140651900	140651872	+	RAMPAGE_only	9	9	59	3.899327	4.960755	chr5	140651884	140651935	DNA|hAT-Charlie|MER5A	+	chr5	140648093	140654727	IK|ENST00000502899.2	+	140648093,140648470,140651713,140652087,140652976,140653937,140654515,140654680	140648162,140648537,140651806,140652147,140653144,140654052,140654586,140654727	0.966102
esophagus_squamous_epithelium_female_adult_51_years	chr12	110334068	110334131	110334130	+	RAMPAGE_only	7	7	30	1.982709	4.348394	chr12	110334168	110334585	LINE|L2|L2a	+	chr12	110292048	110346621	ATP2A2|ENST00000548169.2	+	110292048,110296598,110326389,110327552,110332596,110333180,110334011,110339280,110339502,110340658,110342227,110343231,110344885,110345248,110346000,110346200	110292124,110296737,110326475,110328017,110332685,110333283,110334143,110339403,110339721,110340994,110342448,110343434,110344971,110345382,110346118,110346621	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr2	201116004	201116019	201116004	+	High_confidence	6	8	15	0.991354	2.732915	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr9	92077156	92077220	92077156	-	High_confidence	75	121	258	17.051296	5.992877	chr9	92072526	92078223	LTR|ERV1|HERVH-int	+	chr9	92059178	92077768	STRG.43541.7	-	92059178,92067965,92077090	92059308,92068098,92077768	0.852713
esophagus_squamous_epithelium_female_adult_51_years	chr4	152412488	152412498	152412488	-	High_confidence	6	6	12	0.793084	2.913977	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.916667
esophagus_squamous_epithelium_female_adult_51_years	chr3	153980040	153980204	153980203	-	High_confidence	8	8	51	3.370605	5.023465	chr3	153979573	153983404	LINE|L1|L1PB1	+	chr3	153730760	153980186	LINC02006|ENST00000488210.1	-	153730760,153927260,153937507,153979929	153730807,153927317,153937670,153980186	0.509804
esophagus_squamous_epithelium_female_adult_51_years	chr19	1880087	1880088	1880087	-	High_confidence	9	11	11	0.726993	3.095795	chr19	1880079	1880146	DNA|hAT-Ac|OldhAT1	+	chr19	1877203	1880017	ABHD17A|ENST00000592757.1	-	1877203,1877507,1878663,1879920	1877425,1877687,1878904,1880017	0.909091
esophagus_squamous_epithelium_female_adult_51_years	chr9	92077991	92078016	92078007	-	High_confidence	4	5	21	1.387896	3.784942	chr9	92072526	92078223	LTR|ERV1|HERVH-int	+	chr9	92059178	92077768	STRG.43541.7	-	92059178,92067965,92077090	92059308,92068098,92077768	0.809524
esophagus_squamous_epithelium_female_adult_51_years	chr6	10691014	10691015	10691014	+	High_confidence	19	19	22	1.453986	3.880180	chr6	10691063	10691105	SINE|MIR|MIRc	+	chr6	10690608	10709641	STRG.28520.1	+	10690608,10694748,10697323,10702368,10702564,10703404,10704506,10704746,10707414,10708952,10709237	10691319,10695069,10697486,10702489,10702639,10703457,10704652,10704844,10707514,10709076,10709641	0.727273
esophagus_squamous_epithelium_female_adult_51_years	chrX	115647984	115648009	115647996	+	RAMPAGE_only	3	4	11	0.726993	2.732159	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr2	177499675	177499729	177499694	+	RAMPAGE_only	11	11	23	1.520077	3.317640	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.782609
esophagus_squamous_epithelium_female_adult_51_years	chr13	29647556	29647625	29647624	+	High_confidence	13	13	29	1.916619	4.182006	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647644	29655364	STRG.55815.1	+	29647644,29655069	29647724,29655364	0.827586
esophagus_squamous_epithelium_female_adult_51_years	chr17	32684271	32684272	32684271	-	High_confidence	96	105	136	8.988280	5.815798	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32653863	32684284	MYO1D|ENST00000582217.1	-	32653863,32654476,32659114,32684174	32653947,32654621,32659338,32684284	0.720588
esophagus_squamous_epithelium_female_adult_51_years	chr5	93756069	93756099	93756069	-	High_confidence	4	4	11	0.726993	3.277613	chr5	93755381	93761065	LINE|L1|L1PB1	+	chr5	93618068	93756212	STRG.25824.5	-	93618068,93755659	93621129,93756212	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr1	174238875	174238907	174238906	+	RAMPAGE_only	5	7	19	1.255716	3.070847	chr1	174233266	174239293	LINE|L1|L1PA2	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.736842
esophagus_squamous_epithelium_female_adult_51_years	chr2	201115940	201115967	201115940	+	High_confidence	5	7	15	0.991354	2.556657	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.733333
esophagus_squamous_epithelium_female_adult_51_years	chr7	106285294	106285306	106285305	-	High_confidence	5	6	9	0.594813	2.750000	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106248284	106285192	NAMPT|NM_005746.2	-	106248284,106253016,106254363,106261587,106263391,106268463,106269153,106272529,106274945,106277022,106284827	106251193,106253151,106254504,106261707,106263617,106268600,106269312,106272658,106275049,106277179,106285192	0.888889
esophagus_squamous_epithelium_female_adult_51_years	chr17	32479860	32479866	32479860	+	High_confidence	6	6	12	0.793084	3.277613	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.666667
esophagus_squamous_epithelium_female_adult_51_years	chr1	222064772	222064773	222064772	-	High_confidence	11	12	12	0.793084	2.913977	chr1	222064600	222064953	LTR|ERVL-MaLR|THE1B	-	chr1	222041704	222064763	LINC01705|ENST00000438158.1	-	222041704,222058413,222064684	222041922,222058678,222064763	0.750000
esophagus_squamous_epithelium_female_adult_51_years	chr12	8861798	8861854	8861798	+	RAMPAGE_only	5	5	19	1.255716	3.350209	chr12	8861783	8862059	SINE|Alu|AluSq2	-	chr12	8845003	8876783	A2ML1|NM_001282424.2	+	8845003,8845441,8846076,8847548,8848719,8849668,8850159,8851783,8852209,8854127,8854779,8855508,8857163,8857506,8857945,8860880,8861134,8863793,8867841,8868229,8868536,8869134,8874424,8874970,8876057	8845174,8845502,8846222,8847698,8848914,8849759,8850274,8852012,8852336,8854249,8854831,8855592,8857340,8857588,8858102,8860955,8861297,8864008,8868057,8868357,8868627,8869203,8874527,8875012,8876783	0.947368
esophagus_squamous_epithelium_female_adult_51_years	chr19	39201007	39201525	39201375	+	RAMPAGE_only	108	133	997	65.892022	6.812200	chr19	39201312	39201610	SINE|Alu|AluSz	-	chr19	39196963	39201882	NCCRP1|NM_001001414.1	+	39196963,39198052,39198201,39199169,39200345,39200615	39197319,39198115,39198253,39199265,39200484,39201882	0.994985
esophagus_squamous_epithelium_female_adult_51_years	chr7	134527596	134527597	134527596	+	High_confidence	6592	6810	8805	581.925032	7.186610	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.994321
esophagus_squamous_epithelium_female_adult_51_years	chr19	45450744	45450766	45450765	-	High_confidence	12	12	28	1.850528	4.134336	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.678571
esophagus_squamous_epithelium_female_adult_51_years	chr5	160199150	160199157	160199150	+	High_confidence	4	4	8	0.528722	2.500000	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr6	31067774	31067822	31067821	-	High_confidence	6	6	22	1.453986	4.004886	chr6	31066602	31068056	Retroposon|SVA|SVA_C	-	chr6	31066687	31067999	STRG.29101.1	-	31066687	31067999	0.954545
esophagus_squamous_epithelium_female_adult_51_years	chr4	128428000	128428006	128428000	+	High_confidence	4	4	9	0.594813	2.500000	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.888889
esophagus_squamous_epithelium_female_adult_51_years	chr1	43120089	43120148	43120147	+	High_confidence	9	10	60	3.965418	4.888928	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43120120	43120726	STRG.1583.1	+	43120120	43120726	0.533333
esophagus_squamous_epithelium_female_adult_51_years	chr18	63589358	63589359	63589358	+	RAMPAGE_only	14	14	19	1.255716	3.681881	chr18	63589306	63589451	SINE|Alu|AluSq	+	chr18	63587428	63598743	SERPINB13|ENST00000438844.1	+	63587428,63588650,63589655,63592347,63592853,63594025,63594354,63595028,63596958	63587450,63588832,63589712,63592476,63592971,63594238,63594497,63595184,63598743	0.526316
esophagus_squamous_epithelium_female_adult_51_years	chr14	91462210	91462218	91462210	-	High_confidence	10	11	19	1.255716	2.705229	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.947368
esophagus_squamous_epithelium_female_adult_51_years	chr2	208251431	208251441	208251431	-	RAMPAGE_only	5	5	12	0.793084	2.913977	chr2	208251248	208251382	SINE|Alu|FLAM_A	-	chr2	208236226	208254303	IDH1|NM_001282387.1	-	208236226,208239070,208239862,208241993,208243426,208245318,208248368,208251429,208253885,208254030	208237169,208239233,208240003,208242145,208243604,208245424,208248660,208251567,208253959,208254303	0.916667
esophagus_squamous_epithelium_female_adult_51_years	chr1	12572746	12572806	12572757	-	RAMPAGE_only	3	4	21	1.387896	3.916127	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr19	5850842	5850881	5850869	-	High_confidence	32	34	162	10.706628	4.648363	chr19	5850730	5850957	SINE|Alu|AluJo	+	chr19	5844518	5851449	FUT3|ENST00000589714.1	-	5844518,5846425,5851389	5844851,5846599,5851449	0.876543
esophagus_squamous_epithelium_female_adult_51_years	chr5	75336467	75336519	75336514	+	High_confidence	8	8	32	2.114889	4.180003	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.843750
esophagus_squamous_epithelium_female_adult_51_years	chr1	54780724	54781152	54780821	-	RAMPAGE_only	65	66	853	56.375020	4.582750	chr1	54780746	54780875	LTR|ERVL-MaLR|MLT1O	-	chr1	54779711	54801267	TTC22|ENST00000371276.8	-	54779711,54782324,54785982,54786956,54787710,54788041,54800596	54781779,54782477,54786144,54787075,54787826,54788097,54801267	0.997655
esophagus_squamous_epithelium_female_adult_51_years	chr19	5847518	5847519	5847518	+	High_confidence	18	18	19	1.255716	3.080501	chr19	5847388	5847625	LTR|ERV1|LTR7B	+	chr19	5847466	5858239	AC024592.2|ENST00000589276.1	+	5847466,5852503,5854570,5857615	5847768,5852673,5854662,5858239	0.947368
esophagus_squamous_epithelium_female_adult_51_years	chr19	10919619	10919639	10919635	+	High_confidence	4	4	11	0.726993	2.846439	chr19	10919677	10919748	LINE|L2|L2	+	chr19	10919928	10921900	CARM1|ENST00000586298.1	+	10919928,10920658,10920833,10921049,10921374,10921614	10919966,10920748,10920946,10921127,10921443,10921900	0.909091
esophagus_squamous_epithelium_female_adult_51_years	chr16	72627661	72627720	72627661	-	High_confidence	4	4	17	1.123535	3.852169	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72523331	72627686	LINC01572|ENST00000563823.6	-	72523331,72540577,72555264,72561972,72570450,72617182,72627534	72523415,72540611,72555326,72562086,72570515,72617234,72627686	0.705882
esophagus_squamous_epithelium_female_adult_51_years	chr3	42809437	42809476	42809437	+	High_confidence	2	2	14	0.925264	3.378783	chr3	42809252	42809581	LTR|ERV1|MER39	-	chr3	42809429	42864534	ACKR2|ENST00000463699.5	+	42809429,42819630,42839093,42851295,42864465	42809532,42819711,42839279,42851454,42864534	0.714286
esophagus_squamous_epithelium_female_adult_51_years	chr14	80278717	80278718	80278717	-	RAMPAGE_only	7	7	11	0.726993	2.721928	chr14	80278355	80278872	LTR|ERVL|MLT2B4	-	chr14	80278428	80315838	DIO2|ENST00000556384.1	-	80278428,80313468,80315773	80278519,80313579,80315838	0.727273
esophagus_squamous_epithelium_female_adult_51_years	chr21	13962793	13962812	13962793	-	RAMPAGE_only	3	3	7	0.462632	2.521641	chr21	13962788	13963233	LINE|L1|L1MC1	+	chr21	13937945	13970003	ANKRD20A11P|ENST00000428576.5	-	13937945,13939245,13940814,13945038,13951066,13951231,13969972	13938067,13939428,13940978,13945109,13951139,13951260,13970003	0.714286
esophagus_squamous_epithelium_female_adult_51_years	chr19	282756	282789	282777	-	RAMPAGE_only	3	3	13	0.859174	2.855389	chr19	282643	282733	SINE|MIR|MIR1_Amn	-	chr19	281045	288537	PLPP2|ENST00000621795.1	-	281045,282133,282751	281537,282310,288537	0.923077
esophagus_squamous_epithelium_female_adult_51_years	chr12	50924027	50924051	50924027	+	High_confidence	4	4	10	0.660903	3.121928	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50924004	50929955	METTL7A|ENST00000550502.1	+	50924004,50925036,50929913	50924080,50925536,50929955	0.700000
esophagus_squamous_epithelium_female_adult_51_years	chr10	122127024	122127025	122127024	+	High_confidence	24	24	33	2.180980	4.536670	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.727273
esophagus_squamous_epithelium_female_adult_51_years	chr7	134549094	134549121	134549113	+	High_confidence	6	8	23	1.520077	3.708132	chr7	134549070	134551552	LTR|ERV1|HERVS71-int	+	chr7	134549096	134579840	AKR1B15|NM_001080538.2	+	134549096,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579840	0.782609
esophagus_squamous_epithelium_female_adult_51_years	chr19	46203082	46203083	46203082	-	High_confidence	102	103	110	7.269932	4.897272	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.709091
esophagus_squamous_epithelium_female_adult_51_years	chr17	6853933	6853950	6853933	+	High_confidence	3	3	12	0.793084	2.918296	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6895102	ALOX12P2|ENST00000576636.6	+	6853929,6854213,6892002,6894883,6895095	6854060,6854453,6892075,6895006,6895102	0.500000
esophagus_squamous_epithelium_female_adult_51_years	chr15	70055057	70055092	70055057	-	High_confidence	4	4	15	0.991354	2.923231	chr15	70054865	70055014	SINE|MIR|MIRc	-	chr15	70053173	70055263	TLE3|ENST00000542329.2	-	70053173,70054437,70055048	70053374,70054685,70055263	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr14	80278651	80278654	80278651	-	RAMPAGE_only	4	5	11	0.726993	3.121928	chr14	80278355	80278872	LTR|ERVL|MLT2B4	-	chr14	80211308	80387757	DIO2|ENST00000554188.5	-	80211308,80215971,80278426,80387677	80211525,80216150,80278519,80387757	0.636364
esophagus_squamous_epithelium_female_adult_51_years	chr8	26395604	26395612	26395611	+	High_confidence	10	11	16	1.057445	3.323231	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.937500
esophagus_squamous_epithelium_female_adult_51_years	chr3	14017455	14017488	14017486	+	High_confidence	36	52	171	11.301440	6.274933	chr3	14012549	14017955	LINE|L1|L1PB1	-	chr3	14017446	14082467	STRG.14385.1	+	14017446,14028275,14063378,14081661	14017665,14028384,14063508,14082467	0.625731
esophagus_squamous_epithelium_female_adult_51_years	chr6	167271168	167271176	167271175	+	High_confidence	6	6	16	1.057445	3.155639	chr6	167271035	167271181	DNA|hAT-Charlie|MER5A	+	chr6	167271168	167296196	UNC93A|ENST00000503433.5	+	167271168,167291438,167294516,167296031	167271458,167291576,167294698,167296196	0.937500
esophagus_squamous_epithelium_female_adult_51_years	chr12	49994153	49994156	49994155	-	RAMPAGE_only	7	10	13	0.859174	3.084963	chr12	49994071	49994113	LINE|L2|L2b	-	chr12	49976922	49992358	RACGAP1|ENST00000548961.5	-	49976922,49991997,49992244	49977059,49992133,49992358	0.923077
esophagus_squamous_epithelium_female_adult_51_years	chr15	75347049	75347079	75347049	+	High_confidence	2	2	11	0.726993	2.921928	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347052	75349170	NEIL1|ENST00000568059.1	+	75347052,75347246,75348883	75347110,75347473,75349170	0.545455
esophagus_squamous_epithelium_female_adult_51_years	chr6	82101686	82101718	82101699	-	RAMPAGE_only	5	5	25	1.652257	4.251629	chr6	82101303	82107312	LINE|L1|L1PA2	+	chr6	81845184	81933480	LINC02542|ENST00000418567.1	-	81845184,81928856,81933428	81845909,81928901,81933480	0.520000
esophagus_squamous_epithelium_female_adult_51_years	chr11	57794056	57794069	57794056	+	RAMPAGE_only	5	5	16	1.057445	3.056565	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.937500
esophagus_squamous_epithelium_female_adult_51_years	chr3	197546688	197546736	197546732	-	RAMPAGE_only	39	64	119	7.864745	5.329810	chr3	197546665	197546787	SINE|MIR|MIR3	+	chr3	197546118	197555956	BDH1|ENST00000492681.1	-	197546118,197555780	197546486,197555956	0.630252
esophagus_squamous_epithelium_female_adult_51_years	chr17	41871770	41871800	41871799	-	RAMPAGE_only	5	6	18	1.189625	3.337175	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.888889
esophagus_squamous_epithelium_female_adult_51_years	chr16	10531588	10531717	10531588	-	RAMPAGE_only	4	4	66	4.361959	4.700014	chr16	10531325	10531629	SINE|Alu|AluSx	-	chr16	10528421	10580632	STRG.62572.2	-	10528421,10531690,10537927,10543569,10547539,10580548	10531653,10533092,10538074,10543660,10547677,10580632	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr8	17692198	17692250	17692225	-	High_confidence	3	3	17	1.123535	3.327820	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.764706
esophagus_squamous_epithelium_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	35	35	35	2.313160	3.531679	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.971429
esophagus_squamous_epithelium_female_adult_51_years	chr9	20658312	20658347	20658338	+	High_confidence	4	4	13	0.859174	3.546594	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658335	20694520	STRG.41822.1	+	20658335,20694519	20658826,20694520	0.692308
esophagus_squamous_epithelium_female_adult_51_years	chr3	182644842	182644885	182644884	+	High_confidence	2	2	10	0.660903	2.725481	chr3	182644655	182644887	LINE|L2|L2c	+	chr3	182644213	182655880	LINC02031|ENST00000492416.2	+	182644213,182644467,182644817,182649882,182655821	182644315,182644573,182645024,182650000,182655880	0.800000
esophagus_squamous_epithelium_female_adult_51_years	chr9	39810033	39810034	39810033	-	High_confidence	21	21	25	1.652257	3.733661	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39808816	39810013	STRG.42417.4	-	39808816	39810013	0.960000
esophagus_squamous_epithelium_female_adult_51_years	chr9	72295108	72295109	72295108	+	RAMPAGE_only	23	23	23	1.520077	3.414441	chr9	72295156	72295467	SINE|Alu|AluJb	+	chr9	73151730	73170393	ANXA1|NM_000700.2	+	73151730,73158521,73158694,73159328,73160262,73160802,73162781,73163475,73165115,73166096,73167496,73169031,73170050	73151924,73158601,73158803,73159423,73160376,73160893,73162861,73163532,73165209,73166192,73167555,73169154,73170393	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr21	28090427	28090428	28090427	+	High_confidence	13	14	16	1.057445	3.189898	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090444	28103240	LINC01697|ENST00000436878.1	+	28090444,28101265,28102549	28090521,28101319,28103240	0.937500
esophagus_squamous_epithelium_female_adult_51_years	chr1	12356414	12356456	12356437	+	High_confidence	14	14	56	3.701056	2.963654	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12356350	12510346	VPS13D|ENST00000646411.1	+	12356350,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12356524,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	0.910714
esophagus_squamous_epithelium_female_adult_51_years	chr21	28090294	28090314	28090294	+	High_confidence	3	3	10	0.660903	2.521928	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr21	43775973	43776101	43775973	-	High_confidence	7	7	53	3.502786	4.635361	chr21	43775665	43776004	LTR|ERV1|MER31A	+	chr21	43772510	43776238	CSTB|ENST00000639959.1	-	43772510,43776203	43774330,43776238	0.566038
esophagus_squamous_epithelium_female_adult_51_years	chr11	123060137	123060257	123060137	-	High_confidence	82	118	662	43.751774	5.681199	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.601208
esophagus_squamous_epithelium_female_adult_51_years	chr5	32403116	32403149	32403116	-	RAMPAGE_only	18	19	51	3.370605	4.718912	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.960784
esophagus_squamous_epithelium_female_adult_51_years	chr1	111192146	111192196	111192178	-	RAMPAGE_only	4	5	19	1.255716	3.405822	chr1	111191905	111192139	SINE|MIR|MIRb	-	chr1	111187173	111189328	DENND2D|ENST00000468692.1	-	111187173,111188130,111188701,111189211	111187681,111188370,111188786,111189328	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr22	37849302	37849318	37849317	-	High_confidence	14	15	27	1.784438	3.843856	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.888889
esophagus_squamous_epithelium_female_adult_51_years	chr1	1655378	1655411	1655410	-	RAMPAGE_only	13	16	33	2.180980	4.331977	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.606061
esophagus_squamous_epithelium_female_adult_51_years	chr10	102449839	102449845	102449839	+	High_confidence	5	7	15	0.991354	3.093069	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.666667
esophagus_squamous_epithelium_female_adult_51_years	chr19	5848767	5848772	5848767	-	High_confidence	909	922	1511	99.862433	5.838752	chr19	5847625	5849489	LTR|ERV1|HERVH-int	+	chr19	5844539	5848905	FUT3|ENST00000587048.1	-	5844539,5846425,5848833	5844851,5846618,5848905	0.745202
esophagus_squamous_epithelium_female_adult_51_years	chr22	49925449	49925456	49925449	+	RAMPAGE_only	3	4	11	0.726993	2.550341	chr22	49925493	49925572	LINE|CR1|L3b	+	chr22	49923209	49927528	CRELD2|ENST00000487969.1	+	49923209,49927254	49925557,49927528	0.909091
esophagus_squamous_epithelium_female_adult_51_years	chr12	27030200	27030218	27030217	+	High_confidence	18	18	32	2.114889	2.988107	chr12	27030124	27030371	SINE|Alu|AluJr	-	chr12	27030259	27030673	MED21|ENST00000621885.1	+	27030259	27030673	0.812500
esophagus_squamous_epithelium_female_adult_51_years	chr8	142766152	142766172	142766171	-	RAMPAGE_only	4	4	10	0.660903	2.725481	chr8	142765992	142766460	LTR|ERV1|LTR15	+	chr8	142764350	142769785	SLURP2|ENST00000521396.1	-	142764350,142765035,142769754	142764587,142765140,142769785	0.500000
esophagus_squamous_epithelium_female_adult_51_years	chr11	68019407	68019449	68019410	+	High_confidence	9	9	38	2.511431	4.176191	chr11	68019333	68019423	SINE|MIR|MIRb	+	chr11	68018580	68021852	ALDH3B1|ENST00000616697.1	+	68018580,68018772,68019065,68019714,68021484	68018637,68018893,68019255,68019796,68021852	0.657895
esophagus_squamous_epithelium_female_adult_51_years	chr6	79631273	79631329	79631302	+	High_confidence	210	211	684	45.205761	6.808957	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.991228
esophagus_squamous_epithelium_female_adult_51_years	chr4	8436021	8436026	8436025	-	High_confidence	59	114	165	10.904898	6.397353	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8355224	8436065	STRG.20445.3	-	8355224,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8435922	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8436065	0.703030
esophagus_squamous_epithelium_female_adult_51_years	chr6	43025290	43025312	43025307	+	High_confidence	17	18	46	3.040153	4.400311	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.847826
esophagus_squamous_epithelium_female_adult_51_years	chr2	219420943	219420953	219420943	+	RAMPAGE_only	3	3	7	0.462632	2.807355	chr2	219420988	219421091	SINE|MIR|MIRc	+	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr7	101308293	101308325	101308299	+	High_confidence	4	8	22	1.453986	3.879664	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr2	109546084	109546111	109546084	-	RAMPAGE_only	2	2	8	0.528722	2.750000	chr2	109545815	109546035	LINE|L2|L2a	-	chr2	109542796	109613657	SEPT10|NM_001321513.1	-	109542796,109553086,109564365,109565762,109567814,109574580,109585125,109585720,109593050,109613111	109546237,109553219,109564534,109565859,109567976,109574767,109585321,109585838,109593119,109613657	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chrX	152920330	152920391	152920390	+	High_confidence	12	13	80	5.287223	4.966217	chrX	152920417	152920551	SINE|MIR|MIR3	+	chrX	152920348	152973473	ZNF185|ENST00000426821.6	+	152920348,152920706,152922172,152931671,152932872,152938073,152945266,152959698,152963838,152965446,152967166,152969381,152970442,152971273	152920411,152920748,152922256,152931776,152932971,152938163,152945464,152959896,152963949,152965527,152967238,152969484,152970541,152973473	0.712500
esophagus_squamous_epithelium_female_adult_51_years	chr8	124868214	124868261	124868260	+	RAMPAGE_only	5	5	13	0.859174	3.084963	chr8	124868246	124868336	LINE|L2|L2b	+	chr8	124848765	124944612	LINC00964|ENST00000528090.5	+	124848765,124849274,124849744,124941462,124943269,124944566	124848821,124849336,124849953,124941547,124943383,124944612	0.538462
esophagus_squamous_epithelium_female_adult_51_years	chr13	19243944	19243965	19243944	-	High_confidence	4	4	17	1.123535	2.675698	chr13	19243448	19245701	LINE|L1|L1PB1	+	chr13	19243563	19244126	STRG.55564.1	-	19243563	19244126	0.764706
esophagus_squamous_epithelium_female_adult_51_years	chrX	44225779	44225820	44225802	-	High_confidence	6	6	18	1.189625	3.337175	chrX	44225702	44225811	SINE|MIR|MIR3	-	chrX	44147881	44225756	EFHC2|ENST00000343571.3	-	44147881,44163921,44176291,44178366,44225684	44148896,44164027,44176384,44178564,44225756	0.944444
esophagus_squamous_epithelium_female_adult_51_years	chr1	27558503	27558505	27558504	-	High_confidence	7	9	12	0.793084	2.594907	chr1	27558497	27558557	SINE|MIR|MIR3	+	chr1	27551667	27558361	AHDC1|ENST00000487743.3	-	27551667,27552038,27552891,27553073,27558304	27551850,27552189,27552929,27553185,27558361	0.833333
esophagus_squamous_epithelium_female_adult_51_years	chr20	23426099	23426108	23426107	+	High_confidence	7	7	15	0.991354	3.373557	chr20	23426108	23432140	LINE|L1|L1HS	+	chr20	23426132	23426570	STRG.72440.1	+	23426132	23426570	0.733333
esophagus_squamous_epithelium_female_adult_51_years	chr21	43775855	43775901	43775886	-	High_confidence	3	3	12	0.793084	2.913977	chr21	43775665	43776004	LTR|ERV1|MER31A	+	chr21	43772524	43776268	CSTB|ENST00000480147.3	-	43772524	43776268	0.916667
esophagus_squamous_epithelium_female_adult_51_years	chr19	48704125	48704138	48704137	+	RAMPAGE_only	4	4	15	0.991354	3.456565	chr19	48704139	48704451	SINE|Alu|AluSz	+	chr19	48695974	48705950	FUT2|ENST00000425340.2	+	48695974,48702954	48696089,48705950	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr12	26832738	26832810	26832779	-	High_confidence	8	8	54	3.568876	4.682938	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.962963
esophagus_squamous_epithelium_female_adult_51_years	chr5	96172039	96172077	96172076	-	High_confidence	149	152	309	20.421901	5.705922	chr5	96171973	96172420	LTR|ERV1|LTR7	-	chr5	96165518	96172076	STRG.26134.1	-	96165518,96170071,96171797	96166159,96170257,96172076	0.983819
esophagus_squamous_epithelium_female_adult_51_years	chr3	9792222	9792237	9792222	-	High_confidence	2	2	9	0.594813	2.503258	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr16	27330089	27330165	27330147	+	RAMPAGE_only	4	4	26	1.718348	4.161978	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27340203	27363903	STRG.62906.3	+	27340203,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27340273,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27363903	0.923077
esophagus_squamous_epithelium_female_adult_51_years	chr1	19344364	19344412	19344364	-	RAMPAGE_only	7	7	49	3.238424	4.679708	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.959184
esophagus_squamous_epithelium_female_adult_51_years	chr10	103746972	103746993	103746974	+	High_confidence	4	6	13	0.859174	2.777363	chr10	103746609	103747070	LINE|L2|L2b	+	chr10	103746792	103754466	SH3PXD2A-AS1|ENST00000625265.1	+	103746792,103749781,103753843	103747096,103749920,103754466	0.923077
esophagus_squamous_epithelium_female_adult_51_years	chr12	643625	643636	643635	-	High_confidence	32	32	85	5.617675	4.986191	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	565359	643636	NINJ2|ENST00000433832.2	-	565359,643510	566178,643636	0.505882
esophagus_squamous_epithelium_female_adult_51_years	chr3	195688752	195688753	195688752	+	High_confidence	4	4	6	0.396542	2.584963	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688755	195708806	MUC20-OT1|ENST00000628547.2	+	195688755,195689338,195696360,195699029,195708133,195708746	195688797,195689438,195696589,195699178,195708435,195708806	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr20	31565857	31565858	31565857	+	High_confidence	12	12	14	0.925264	2.719295	chr20	31565825	31565966	DNA|hAT-Charlie|MER5A	+	chr20	31566056	31569252	HM13|ENST00000493364.1	+	31566056,31569119	31566295,31569252	0.714286
esophagus_squamous_epithelium_female_adult_51_years	chr6	167271298	167271331	167271323	+	High_confidence	4	4	19	1.255716	3.461320	chr6	167271259	167271341	DNA|hAT-Charlie|MER5A	+	chr6	167271168	167296196	UNC93A|ENST00000503433.5	+	167271168,167291438,167294516,167296031	167271458,167291576,167294698,167296196	0.894737
esophagus_squamous_epithelium_female_adult_51_years	chr19	5680234	5680249	5680246	-	High_confidence	5	5	17	1.123535	3.500000	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.941176
esophagus_squamous_epithelium_female_adult_51_years	chr21	13954071	13954116	13954071	-	RAMPAGE_only	4	4	17	1.123535	3.625000	chr21	13953734	13954027	SINE|Alu|AluYm1	-	chr21	13939373	13962785	ANKRD20A11P|ENST00000432875.5	-	13939373,13940814,13945038,13951066,13951231,13962739	13939428,13940978,13945143,13951139,13951260,13962785	0.882353
esophagus_squamous_epithelium_female_adult_51_years	chr3	197299245	197299320	197299316	-	High_confidence	9	9	26	1.718348	4.373661	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.884615
esophagus_squamous_epithelium_female_adult_51_years	chr1	174874418	174874441	174874418	+	High_confidence	10	14	36	2.379251	4.593429	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.666667
esophagus_squamous_epithelium_female_adult_51_years	chr14	80230917	80230992	80230959	-	High_confidence	10	11	35	2.313160	4.275415	chr14	80230830	80231256	LTR|ERVL|MLT2A1	-	chr14	80197524	80231054	DIO2|NM_000793.5	-	80197524,80211250,80215971,80230900	80203288,80211525,80216150,80231054	0.971429
esophagus_squamous_epithelium_female_adult_51_years	chr2	16599757	16599758	16599757	-	RAMPAGE_only	6	6	6	0.396542	2.584963	chr2	16593725	16599758	LINE|L1|L1HS	-	chr2	16552935	16665828	FAM49A|ENST00000406434.5	-	16552935,16555068,16559459,16560989,16561160,16561455,16562004,16563988,16565645,16588049,16622938,16623863,16665779	16552999,16555139,16559586,16561069,16561277,16561533,16562141,16564094,16565767,16588129,16623137,16624019,16665828	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr7	135699756	135699762	135699756	-	High_confidence	12	14	37	2.445341	4.013111	chr7	135699616	135699841	SINE|MIR|MIRb	+	chr7	135691292	135699516	STRG.37038.1	-	135691292,135691547,135692322,135694136,135695367,135699363	135691325,135691645,135692424,135694238,135695487,135699516	0.945946
esophagus_squamous_epithelium_female_adult_51_years	chr19	16082034	16082042	16082041	+	High_confidence	5	7	10	0.660903	2.921928	chr19	16082077	16082207	SINE|MIR|MIRb	+	chr19	16081722	16093581	TPM4|ENST00000592138.5	+	16081722,16086422,16088026,16089044,16093535	16082046,16086540,16088097,16089120,16093581	0.800000
esophagus_squamous_epithelium_female_adult_51_years	chr8	8177047	8177068	8177047	+	High_confidence	3	3	18	1.189625	3.836592	chr8	8172260	8180087	LTR|ERV1|HERVE-int	+	chr8	8177037	8180380	STRG.37983.2	+	8177037,8177736	8177178,8180380	0.833333
esophagus_squamous_epithelium_female_adult_51_years	chr2	187520535	187520540	187520535	+	High_confidence	3	3	9	0.594813	2.750000	chr2	187517160	187520609	LINE|L1|L1P3	-	chr2	187520564	187554606	STRG.12296.1	+	187520564,187547077,187547543,187554316,187554576	187520688,187547163,187547707,187554393,187554606	0.888889
esophagus_squamous_epithelium_female_adult_51_years	chr9	73113894	73113905	73113894	-	High_confidence	30	30	94	6.212488	4.715397	chr9	73113574	73113872	SINE|Alu|AluJo	-	chr9	73111764	73113891	STRG.43212.3	-	73111764,73113596	73112501,73113891	0.925532
esophagus_squamous_epithelium_female_adult_51_years	chr20	48192316	48192322	48192321	+	High_confidence	52	52	82	5.419404	5.436625	chr20	48191876	48192430	LTR|ERVL-MaLR|MLT1K	-	chr20	48192337	48198463	STRG.73045.1	+	48192337,48192893,48194453,48195250,48197536	48192490,48193039,48194649,48195439,48198463	0.707317
esophagus_squamous_epithelium_female_adult_51_years	chr1	209567751	209567777	209567751	-	High_confidence	3	3	19	1.255716	3.681881	chr1	209567578	209567919	LTR|ERVL-MaLR|MLT1I	-	chr1	209516680	209567814	STRG.5653.1	-	209516680,209525161,209526274,209531246,209540697,209541307,209542845,209566911,209567535	209517353,209525393,209526426,209531374,209540788,209541429,209542918,209566987,209567814	0.789474
esophagus_squamous_epithelium_female_adult_51_years	chr6	160926952	160926990	160926989	+	High_confidence	26	26	93	6.146397	4.790982	chr6	160926775	160927209	LTR|ERVL-MaLR|MLT1A	+	chr6	160926977	160981479	STRG.32601.1	+	160926977,160927862,160956566,160958968,160969717,160981408	160927232,160928016,160956700,160959064,160969824,160981479	0.892473
esophagus_squamous_epithelium_female_adult_51_years	chr5	93756155	93756160	93756159	-	High_confidence	3	5	12	0.793084	2.688722	chr5	93755381	93761065	LINE|L1|L1PB1	+	chr5	93618068	93756212	STRG.25824.5	-	93618068,93755659	93621129,93756212	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr12	75983998	75984028	75984006	-	High_confidence	16	17	75	4.956772	5.554694	chr12	75983502	75984058	LINE|L2|L2a	+	chr12	75631129	75984015	STRG.54334.1	-	75631129,75692104,75692902,75694599,75694856,75956290,75983720	75631314,75692179,75692992,75694770,75694975,75956371,75984015	0.760000
esophagus_squamous_epithelium_female_adult_51_years	chr5	133064420	133064450	133064420	+	RAMPAGE_only	9	11	43	2.841883	4.277926	chr5	133064223	133064516	SINE|Alu|AluSx	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.674419
esophagus_squamous_epithelium_female_adult_51_years	chr17	11974091	11974095	11974094	+	High_confidence	9	11	21	1.387896	3.916127	chr17	11972189	11975291	LTR|ERV1|HERVH-int	+	chr17	11973816	11976721	STRG.64953.1	+	11973816,11976500	11974437,11976721	0.952381
esophagus_squamous_epithelium_female_adult_51_years	chr16	15006426	15006437	15006426	+	RAMPAGE_only	3	3	7	0.462632	2.521641	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.714286
esophagus_squamous_epithelium_female_adult_51_years	chr3	14017298	14017389	14017309	+	High_confidence	10	10	51	3.370605	5.015371	chr3	14012549	14017955	LINE|L1|L1PB1	-	chr3	14017266	14064401	TPRXL|ENST00000528067.2	+	14017266,14064024	14017665,14064401	0.647059
esophagus_squamous_epithelium_female_adult_51_years	chr19	41663285	41663340	41663324	-	High_confidence	6	6	30	1.982709	4.323231	chr19	41663183	41663495	LTR|ERVL-MaLR|THE1B	-	chr19	41641452	41663323	STRG.70953.1	-	41641452,41651501,41663210	41641858,41651631,41663323	0.633333
esophagus_squamous_epithelium_female_adult_51_years	chr15	82935299	82935337	82935299	-	RAMPAGE_only	3	3	8	0.528722	3.000000	chr15	82934248	82936442	LINE|L2|L2a	+	chr15	82848982	82952721	HOMER2|ENST00000450735.6	-	82848982,82851150,82852141,82854643,82859028,82864166,82875272,82892684,82952530	82849903,82851231,82852252,82854800,82859135,82864259,82875404,82892841,82952721	0.875000
esophagus_squamous_epithelium_female_adult_51_years	chr2	177314856	177314917	177314916	-	High_confidence	27	31	168	11.103169	5.607071	chr2	177314867	177315028	DNA|hAT-Charlie|MER5A1	+	chr2	177310726	177314918	AC019080.1|ENST00000443132.1	-	177310726,177311232,177314795	177311035,177311328,177314918	0.660714
esophagus_squamous_epithelium_female_adult_51_years	chr6	30986140	30986174	30986140	+	RAMPAGE_only	6	6	20	1.321806	3.721928	chr6	30986064	30986223	SINE|MIR|MIR	+	chr6	30983717	30988637	MUC21|ENST00000486149.2	+	30983717,30986236,30987999	30984161,30987681,30988637	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr15	67166512	67166533	67166530	+	High_confidence	180	180	446	29.476271	5.583479	chr15	67166449	67166543	LINE|L2|L2b	-	chr15	67166530	67181420	SMAD3|ENST00000558428.5	+	67166530,67170553,67181240	67166853,67170604,67181420	0.950673
esophagus_squamous_epithelium_female_adult_51_years	chr17	79919434	79919479	79919478	+	High_confidence	4	4	14	0.925264	3.521641	chr17	79919488	79919611	SINE|MIR|MIR3	+	chr17	79919373	79925462	LINC01978|ENST00000572353.1	+	79919373,79925125	79919576,79925462	0.642857
esophagus_squamous_epithelium_female_adult_51_years	chr7	6590248	6590272	6590251	+	High_confidence	6	6	26	1.718348	3.813661	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.961538
esophagus_squamous_epithelium_female_adult_51_years	chr6	3083182	3083252	3083251	+	RAMPAGE_only	5	5	28	1.850528	3.565448	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.928571
esophagus_squamous_epithelium_female_adult_51_years	chrX	152946957	152947026	152946999	+	RAMPAGE_only	5	5	26	1.718348	3.397582	chrX	152946865	152947098	LINE|L2|L2c	-	chrX	152941700	152973472	ZNF185|ENST00000454925.1	+	152941700,152945266,152959698,152963838,152965446,152967166,152969381,152970442,152971273	152941830,152945464,152959896,152963949,152965527,152967238,152969484,152970541,152973472	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr7	150323728	150323751	150323750	-	High_confidence	9	9	17	1.123535	3.292770	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr2	43137646	43137660	43137659	-	RAMPAGE_only	15	17	28	1.850528	3.825252	chr2	43137289	43137984	LINE|L2|L2a	+	chr2	43097745	43102691	LINC02580|ENST00000434020.1	-	43097745,43102034	43098040,43102691	0.785714
esophagus_squamous_epithelium_female_adult_51_years	chr19	35115834	35115862	35115834	+	High_confidence	5	5	20	1.321806	3.621928	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.900000
esophagus_squamous_epithelium_female_adult_51_years	chr7	7566530	7566538	7566530	-	High_confidence	5	5	14	0.925264	3.182006	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.928571
esophagus_squamous_epithelium_female_adult_51_years	chr1	20775747	20775748	20775747	-	RAMPAGE_only	5	5	8	0.528722	2.521641	chr1	20775005	20775936	DNA|TcMar-Tigger|Tigger3b	+	chr1	20775449	20780541	HP1BP3|ENST00000487117.1	-	20775449,20779811,20780344	20776750,20779911,20780541	0.500000
esophagus_squamous_epithelium_female_adult_51_years	chr1	181044863	181044864	181044863	+	RAMPAGE_only	5	5	7	0.462632	2.807355	chr1	181044850	181045171	DNA|hAT-Tip100|MER115	+	chr1	181034021	181051273	MR1|ENST00000367578.1	+	181034021,181049051,181050010	181034074,181049312,181051273	0.571429
esophagus_squamous_epithelium_female_adult_51_years	chr21	13934440	13934494	13934493	-	RAMPAGE_only	15	24	74	4.890682	4.737489	chr21	13934252	13936999	Retroposon|SVA|SVA_A	-	chr21	13843132	13979997	STRG.73567.1	-	13843132,13844021,13845004,13846012,13846758,13904342,13907889,13909573,13910495,13911717,13915186,13916746,13917554,13925163,13932227,13933530,13939245,13940814,13945038,13951066,13951231,13954065,13967380,13969972,13971995	13843432,13844135,13845274,13846141,13846957,13907736,13908028,13909693,13910549,13911763,13915409,13916958,13917836,13925293,13932374,13938067,13939428,13940978,13945109,13951139,13951260,13962871,13967436,13970110,13979997	0.972973
esophagus_squamous_epithelium_female_adult_51_years	chr11	125090446	125090447	125090446	+	High_confidence	33	33	33	2.180980	4.150159	chr11	125089312	125090854	LTR|ERV1|LTR12C	+	chr11	125090566	125102211	STRG.51979.1	+	125090566,125102104	125090871,125102211	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr16	87950453	87950463	87950453	+	High_confidence	2	3	9	0.594813	2.750000	chr16	87950440	87950735	SINE|Alu|AluSx1	-	chr16	87950435	87984234	BANP|ENST00000488074.1	+	87950435,87981035,87984059	87950927,87981127,87984234	0.888889
esophagus_squamous_epithelium_female_adult_51_years	chr17	8105048	8105054	8105053	-	RAMPAGE_only	6	6	13	0.859174	2.522055	chr17	8104851	8105069	LINE|L2|L2a	+	chr17	8096248	8103515	ALOXE3|ENST00000583808.1	-	8096248,8103322	8096806,8103515	0.923077
esophagus_squamous_epithelium_female_adult_51_years	chr12	113225278	113225288	113225287	+	High_confidence	4	4	10	0.660903	2.503258	chr12	113225050	113225358	SINE|Alu|AluJr4	-	chr12	113225245	113298582	TPCN1|ENST00000541517.5	+	113225245,113226727,113260367,113266179,113267842,113268741,113269756,113272657,113273231,113273568,113276918,113277239,113278188,113278771,113280150,113284580,113284717,113285888,113286986,113288162,113288757,113290127,113290951,113291608,113291873,113292933,113293268,113295959	113225336,113226964,113260492,113266356,113267956,113268872,113269845,113272692,113273290,113273668,113277035,113277364,113278237,113278835,113280195,113284637,113284771,113285961,113287094,113288234,113288847,113290243,113290998,113291677,113291958,113293073,113293349,113298582	0.900000
esophagus_squamous_epithelium_female_adult_51_years	chr11	76920127	76920139	76920129	+	RAMPAGE_only	3	5	10	0.660903	2.947703	chr11	76919910	76920629	LTR|ERVL|LTR41	+	chr11	76926556	77015106	ACER3|ENST00000527508.1	+	76926556,76958978,76976288,76985642,76990538,76998762,77011329,77015015	76926667,76959031,76976341,76985724,76990574,76998821,77011375,77015106	0.700000
esophagus_squamous_epithelium_female_adult_51_years	chr8	38825325	38825367	38825366	+	RAMPAGE_only	3	3	12	0.793084	3.084963	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr21	41668862	41668863	41668862	-	RAMPAGE_only	8	10	11	0.726993	2.646439	chr21	41668831	41668924	SINE|MIR|MIRb	+	chr21	41665578	41666174	STRG.74297.1	-	41665578	41666174	0.909091
esophagus_squamous_epithelium_female_adult_51_years	chr15	90467487	90467514	90467487	+	RAMPAGE_only	3	3	9	0.594813	2.725481	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.555556
esophagus_squamous_epithelium_female_adult_51_years	chr21	13879173	13879246	13879173	-	RAMPAGE_only	6	6	36	2.379251	3.648511	chr21	13879017	13880326	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843132	13885096	STRG.73567.5	-	13843132,13844021,13845004,13846012,13846758,13848089,13859505	13843432,13844135,13845274,13846141,13847730,13859426,13885096	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr16	12117405	12117507	12117449	+	High_confidence	9	11	72	4.758501	4.940250	chr16	12117445	12117786	LINE|L1|L1MB5	+	chr16	12117025	12574289	STRG.62617.2	+	12117025,12126632,12129629,12199600,12277932,12356162,12398445,12403447,12477718,12524701,12568505	12117643,12126696,12129758,12199683,12278036,12356279,12398501,12403529,12477859,12524841,12574289	0.916667
esophagus_squamous_epithelium_female_adult_51_years	chr16	63618045	63618046	63618045	-	High_confidence	33	44	48	3.172334	4.953213	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.833333
esophagus_squamous_epithelium_female_adult_51_years	chr17	11974171	11974198	11974174	+	High_confidence	6	6	32	2.114889	4.116729	chr17	11972189	11975291	LTR|ERV1|HERVH-int	+	chr17	11973816	11976721	STRG.64953.1	+	11973816,11976500	11974437,11976721	0.687500
esophagus_squamous_epithelium_female_adult_51_years	chr8	101975326	101975331	101975326	-	High_confidence	16	17	34	2.247070	4.210765	chr8	101975304	101975478	DNA|hAT-Charlie|MER5A	-	chr8	101692865	101975329	NCALD|ENST00000520690.5	-	101692865,101719251,101915808,101975259	101692896,101719648,101915858,101975329	0.500000
esophagus_squamous_epithelium_female_adult_51_years	chr22	50757202	50757248	50757247	+	High_confidence	7	7	17	1.123535	3.149397	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.764706
esophagus_squamous_epithelium_female_adult_51_years	chr10	103181328	103181329	103181328	-	High_confidence	47	47	47	3.106244	4.426513	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103169283	103181320	NT5C2|ENST00000467380.1	-	103169283,103174857,103181184	103169449,103174982,103181320	0.659574
esophagus_squamous_epithelium_female_adult_51_years	chr20	37344680	37344696	37344695	+	High_confidence	9	12	29	1.916619	4.306257	chr20	37344715	37344779	SINE|MIR|MIRc	+	chr20	37344684	37405432	SRC|NM_005417.4	+	37344684,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.655172
esophagus_squamous_epithelium_female_adult_51_years	chr9	72577903	72577934	72577933	+	High_confidence	3	3	9	0.594813	2.725481	chr9	72577878	72578168	SINE|Alu|AluSz	-	chr9	72577938	72830511	TMC1|ENST00000645773.1	+	72577938,72616367,72627920,72648596,72688708,72694542,72740118,72742443,72751849,72754785,72772412,72788338,72789122,72791885,72792190,72805381,72816142,72820841,72826868,72830450	72578023,72616477,72628063,72648664,72688756,72694714,72740209,72742525,72751956,72754884,72772555,72788483,72789317,72792065,72792352,72805510,72816210,72821081,72826994,72830511	0.666667
esophagus_squamous_epithelium_female_adult_51_years	chr3	14063410	14063434	14063433	+	RAMPAGE_only	4	4	10	0.660903	2.646439	chr3	14063376	14063668	SINE|Alu|AluJr4	-	chr3	14048201	14064238	TPRXL|ENST00000528040.1	+	14048201,14063378,14064024	14048365,14063508,14064238	0.600000
esophagus_squamous_epithelium_female_adult_51_years	chr3	52615384	52615427	52615426	-	High_confidence	4	4	17	1.123535	3.175123	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr1	34781544	34781568	34781558	+	High_confidence	4	4	13	0.859174	3.238901	chr1	34781455	34781569	SINE|MIR|MIRc	-	chr1	34781188	34786364	GJB3|ENST00000373366.2	+	34781188,34784737	34781778,34786364	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr22	30836405	30836432	30836405	+	RAMPAGE_only	3	3	9	0.594813	3.169925	chr22	30836269	30836421	SINE|MIR|MIR	-	chr22	30822515	30907824	OSBP2|ENST00000437268.6	+	30822515,30870428,30887425,30888222,30889176,30889489,30890727,30893121,30893462,30893637,30893816,30905836,30906193	30822709,30870682,30887618,30888340,30889234,30889636,30890973,30893242,30893566,30893733,30894001,30906069,30907824	0.666667
esophagus_squamous_epithelium_female_adult_51_years	chr17	13931138	13931155	13931138	-	High_confidence	10	11	36	2.379251	4.479143	chr17	13931030	13931624	LTR|ERVL-MaLR|MLT1L	+	chr17	13790670	13931121	STRG.65039.1	-	13790670,13880301,13892724,13898608,13931022	13791075,13880371,13892842,13898732,13931121	0.611111
esophagus_squamous_epithelium_female_adult_51_years	chr19	49086546	49086547	49086546	+	High_confidence	10	10	10	0.660903	2.646439	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49108479	STRG.71360.4	+	49086523,49090290,49090465,49098426,49098641,49101389,49102113,49104633,49107624,49107821	49086561,49090353,49090520,49098491,49098704,49101471,49102173,49104735,49107712,49108479	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr19	3136820	3136870	3136835	-	High_confidence	41	44	248	16.390393	4.786942	chr19	3136742	3136815	SINE|MIR|MIRc	-	chr19	3117279	3136843	STRG.69463.3	-	3117279,3119253,3121078,3121395,3124311,3136467	3119065,3119304,3121284,3121452,3125467,3136843	0.987903
esophagus_squamous_epithelium_female_adult_51_years	chr6	106970504	106971001	106970647	-	RAMPAGE_only	269	293	2278	150.553688	7.404263	chr6	106970529	106970829	SINE|Alu|AluSx1	+	chr6	106969830	106974039	CD24|NM_001291739.1	-	106969830,106973669	106971834,106974039	0.998244
esophagus_squamous_epithelium_female_adult_51_years	chr1	45522822	45522859	45522858	-	High_confidence	452	454	850	56.176749	5.174202	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.985882
esophagus_squamous_epithelium_female_adult_51_years	chr7	77990356	77990380	77990356	+	RAMPAGE_only	6	6	12	0.793084	3.188722	chr7	77987877	77991087	LINE|L1|L1PBa1	-	chr7	78032540	78032789	STRG.34891.1	+	78032540	78032789	0.583333
esophagus_squamous_epithelium_female_adult_51_years	chr8	81590141	81590170	81590169	-	RAMPAGE_only	6	6	12	0.793084	3.095795	chr8	81589985	81590374	DNA|hAT-Charlie|Charlie14a	+	chr8	81524980	81531378	FABP12|ENST00000360464.4	-	81524980,81527019,81529437,81531242	81525120,81527121,81529610,81531378	0.833333
esophagus_squamous_epithelium_female_adult_51_years	chr13	52617113	52617170	52617169	+	High_confidence	6	6	16	1.057445	3.327820	chr13	52616905	52617215	SINE|Alu|AluSg	+	chr13	52617469	52643784	HNRNPA1L2|NM_001011725.1	+	52617469,52621988,52627437,52632421,52637304,52642405	52617682,52622264,52627578,52632494,52637446,52643784	0.562500
esophagus_squamous_epithelium_female_adult_51_years	chr1	171517794	171517814	171517813	+	RAMPAGE_only	6	6	11	0.726993	3.121928	chr1	171517862	171517949	DNA|hAT-Charlie|Charlie4a	+	chr1	171522514	171524855	PRRC2C|ENST00000480806.1	+	171522514,171523220,171523434,171524820	171522556,171523354,171523522,171524855	0.636364
esophagus_squamous_epithelium_female_adult_51_years	chr12	13376665	13376679	13376665	-	High_confidence	21	23	35	2.313160	4.620152	chr12	13376413	13376888	LTR|ERVL|MLT2B1	-	chr12	13374797	13376675	LINC01559|ENST00000539026.1	-	13374797,13376223,13376513	13375006,13376425,13376675	0.771429
esophagus_squamous_epithelium_female_adult_51_years	chr10	72355126	72355146	72355126	-	High_confidence	3	3	14	0.925264	2.692381	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr6	118651592	118651602	118651592	-	High_confidence	4	4	11	0.726993	2.921928	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.909091
esophagus_squamous_epithelium_female_adult_51_years	chr10	80176123	80176145	80176123	-	RAMPAGE_only	4	4	12	0.793084	3.277613	chr10	80176083	80176485	LINE|L1|L1ME4b	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	0.666667
esophagus_squamous_epithelium_female_adult_51_years	chr5	14653390	14653391	14653390	-	High_confidence	19	20	20	1.321806	3.642150	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.900000
esophagus_squamous_epithelium_female_adult_51_years	chr20	34369407	34369458	34369409	+	RAMPAGE_only	4	7	19	1.255716	3.169925	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.947368
esophagus_squamous_epithelium_female_adult_51_years	chr11	62600173	62600242	62600241	-	High_confidence	5	5	17	1.123535	3.077820	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.647059
esophagus_squamous_epithelium_female_adult_51_years	chr9	127944627	127944655	127944627	-	RAMPAGE_only	2	2	10	0.660903	2.521928	chr9	127944423	127944587	SINE|MIR|MIRb	-	chr9	127940880	127948159	FAM102A|ENST00000465821.5	-	127940880,127944776,127945366,127945648,127948070	127944684,127944898,127945562,127945753,127948159	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr2	233691669	233691710	233691673	+	High_confidence	77	79	227	15.002497	6.393068	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233691674	233773299	UGT1A6|NM_205862.1	+	233691674,233693798,233767033,233767848,233768219,233772261	233691820,233693865,233767165,233767936,233768439,233773299	0.792952
esophagus_squamous_epithelium_female_adult_51_years	chr2	29114149	29114219	29114158	+	High_confidence	8	8	52	3.436695	4.871220	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29114171	29145768	STRG.7964.8	+	29114171,29121373,29131257,29132151,29133654,29135547,29143708	29114312,29121521,29131397,29132245,29133816,29135666,29145768	0.923077
esophagus_squamous_epithelium_female_adult_51_years	chr14	22566425	22566447	22566444	-	RAMPAGE_only	4	5	14	0.925264	3.182006	chr14	22566338	22566626	SINE|Alu|AluSp	-	chr14	22564906	22575089	DAD1|ENST00000489532.6	-	22564906,22567087,22575058	22565137,22567164,22575089	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr5	93756019	93756036	93756031	-	High_confidence	4	4	12	0.793084	2.855389	chr5	93755381	93761065	LINE|L1|L1PB1	+	chr5	93618068	93756212	STRG.25824.5	-	93618068,93755659	93621129,93756212	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr12	109878996	109878999	109878996	+	High_confidence	26	27	59	3.899327	4.920662	chr12	109878962	109879076	SINE|MIR|MIRb	-	chr12	109879008	109918066	STRG.55057.2	+	109879008,109903026,109903936,109906571,109907525,109908585,109908870,109911062,109912990,109914441,109915402,109916590	109879108,109903214,109904793,109906640,109907699,109908698,109908937,109911235,109913072,109914627,109915546,109918066	0.864407
esophagus_squamous_epithelium_female_adult_51_years	chr16	67571179	67571215	67571214	+	High_confidence	3	3	9	0.594813	2.641604	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr19	45823789	45823823	45823789	-	High_confidence	3	6	13	0.859174	2.918296	chr19	45823777	45823871	LINE|RTE-BovB|MamRTE1	-	chr19	45816482	45824012	SYMPK|ENST00000598329.2	-	45816482,45816797,45817958,45821383,45822755,45823371,45823766	45816577,45816974,45818146,45821485,45822846,45823472,45824012	0.923077
esophagus_squamous_epithelium_female_adult_51_years	chr18	39800293	39800314	39800293	-	High_confidence	13	14	31	2.048799	4.094740	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.645161
esophagus_squamous_epithelium_female_adult_51_years	chr2	174410413	174410414	174410413	+	High_confidence	9	11	14	0.925264	2.664498	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr1	26953949	26953952	26953949	-	RAMPAGE_only	9	9	15	0.991354	3.039149	chr1	26953674	26953977	SINE|Alu|AluJb	+	chr1	26949564	26960385	KDF1|ENST00000616918.1	-	26949564,26950681,26951341,26952159,26960349	26950151,26950756,26952041,26952412,26960385	0.933333
esophagus_squamous_epithelium_female_adult_51_years	chr5	96979696	96979748	96979696	+	RAMPAGE_only	3	3	17	1.123535	2.602217	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	0.941176
esophagus_squamous_epithelium_female_adult_51_years	chr3	190556160	190556207	190556206	+	RAMPAGE_only	6	6	18	1.189625	3.572431	chr3	190556136	190556235	LINE|L1|L1ME3	-	chr3	190563445	190609079	IL1RAP|ENST00000453359.5	+	190563445,190564288,190604127,190608994	190563532,190564353,190604413,190609079	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr15	71546887	71546925	71546887	+	High_confidence	18	26	46	3.040153	4.542705	chr15	71546806	71547005	SINE|MIR|MIR3	-	chr15	71547201	71783383	THSD4|NM_001286429.1	+	71547201,71660529,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71771063,71777231	71547481,71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71771208,71783383	0.804348
esophagus_squamous_epithelium_female_adult_51_years	chr7	7566022	7566039	7566032	-	High_confidence	10	10	20	1.321806	3.300559	chr7	7565778	7566082	SINE|Alu|AluSc	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.800000
esophagus_squamous_epithelium_female_adult_51_years	chr19	51069500	51069501	51069500	-	RAMPAGE_only	6	6	9	0.594813	2.725481	chr19	51069174	51069685	LINE|L2|L2-1_AMi	+	chr19	51056586	51065822	STRG.71421.3	-	51056586,51058537,51059824,51060432,51065015,51065637	51056775,51058674,51060093,51060619,51065106,51065822	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr3	135965682	135965734	135965723	+	High_confidence	18	18	93	6.146397	5.151507	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.989247
esophagus_squamous_epithelium_female_adult_51_years	chr18	46087016	46087084	46087018	-	High_confidence	3	5	29	1.916619	3.857307	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.965517
esophagus_squamous_epithelium_female_adult_51_years	chr20	24930628	24930666	24930639	+	High_confidence	40	41	255	16.853025	6.217796	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930635	24932971	STRG.72466.1	+	24930635,24931346	24930774,24932971	0.992157
esophagus_squamous_epithelium_female_adult_51_years	chr11	119046586	119046635	119046604	-	RAMPAGE_only	16	18	62	4.097598	4.062257	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr4	75127193	75127225	75127212	-	RAMPAGE_only	15	16	94	6.212488	5.149130	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.851064
esophagus_squamous_epithelium_female_adult_51_years	chr7	99410112	99410162	99410146	+	High_confidence	5	6	29	1.916619	3.810928	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.827586
esophagus_squamous_epithelium_female_adult_51_years	chr19	55069745	55069781	55069774	-	High_confidence	13	26	63	4.163688	5.040462	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55059252	55069540	RDH13|ENST00000587026.1	-	55059252,55062967,55068412,55069321	55059275,55063217,55068530,55069540	0.666667
esophagus_squamous_epithelium_female_adult_51_years	chr17	28233986	28234048	28234047	-	RAMPAGE_only	4	6	18	1.189625	3.572431	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr15	81228036	81228063	81228062	+	RAMPAGE_only	2	3	8	0.528722	2.750000	chr15	81228022	81228127	LINE|L2|L2c	-	chr15	81225399	81308798	IL16|ENST00000302987.8	+	81225399,81259771,81265658,81269537,81273089,81278816,81279557,81282638,81285697,81290452,81292555,81296927,81299379,81301343,81303548,81305907,81306419,81308604	81225711,81259880,81265801,81269648,81273204,81278890,81279774,81282756,81285830,81290540,81293037,81297078,81300475,81301512,81303650,81306166,81306545,81308798	0.875000
esophagus_squamous_epithelium_female_adult_51_years	chr2	206161376	206161466	206161465	+	High_confidence	10	10	67	4.428050	5.271371	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	0.746269
esophagus_squamous_epithelium_female_adult_51_years	chr16	81664287	81664343	81664342	+	RAMPAGE_only	15	15	32	2.114889	2.962705	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr19	17336685	17336727	17336685	+	High_confidence	6	6	17	1.123535	2.748940	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.882353
esophagus_squamous_epithelium_female_adult_51_years	chr15	57451559	57451565	57451564	+	RAMPAGE_only	3	5	10	0.660903	2.503258	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.900000
esophagus_squamous_epithelium_female_adult_51_years	chr6	273776	273779	273778	+	High_confidence	13	20	26	1.718348	4.133661	chr6	273768	274070	LTR|ERVL-MaLR|MLT1E2	+	chr6	273833	282569	STRG.28177.1	+	273833,281791	274222,282569	0.653846
esophagus_squamous_epithelium_female_adult_51_years	chr6	28354137	28354144	28354137	-	High_confidence	29	30	58	3.833237	4.362882	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329373	28354186	ZSCAN31|ENST00000446222.5	-	28329373,28336789,28353861,28354130	28329778,28336943,28353952,28354186	0.896552
esophagus_squamous_epithelium_female_adult_51_years	chr2	96303166	96303271	96303166	-	RAMPAGE_only	9	9	82	5.419404	5.422539	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
esophagus_squamous_epithelium_female_adult_51_years	chr19	39198216	39198249	39198225	+	RAMPAGE_only	35	37	105	6.939481	4.422077	chr19	39198261	39198457	SINE|MIR|MIRb	+	chr19	39196963	39201882	NCCRP1|NM_001001414.1	+	39196963,39198052,39198201,39199169,39200345,39200615	39197319,39198115,39198253,39199265,39200484,39201882	0.990476
esophagus_squamous_epithelium_female_adult_51_years	chr11	77084702	77084752	77084737	+	High_confidence	4	4	11	0.726993	2.913977	chr11	77084653	77084796	SINE|MIR|MIRb	+	chr11	77084964	77112911	CAPN5|ENST00000533889.1	+	77084964,77093681,77112588	77085051,77093813,77112911	0.909091
esophagus_squamous_epithelium_female_adult_51_years	chr1	86424340	86424370	86424340	+	High_confidence	74	74	127	8.393467	5.013499	chr1	86424338	86424378	LINE|RTE-BovB|MamRTE1	+	chr1	86424085	86456558	CLCA2|ENST00000370565.4	+	86424085,86425338,86428417,86430861,86432368,86434517,86438875,86440147,86441436,86443786,86447507,86450562,86453368,86455084	86424433,86425476,86428568,86430970,86432528,86434745,86439106,86440325,86441543,86444011,86447778,86450733,86453602,86456558	0.976378
esophagus_squamous_epithelium_female_adult_51_years	chr5	176411456	176411459	176411458	-	RAMPAGE_only	1616	1941	2500	165.225733	6.810995	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.844800
esophagus_squamous_epithelium_female_adult_51_years	chr5	72926306	72926307	72926306	+	High_confidence	32	32	33	2.180980	4.077820	chr5	72925316	72926709	LTR|ERV1|LTR12C	+	chr5	72926227	72926747	STRG.25232.1	+	72926227	72926747	0.818182
esophagus_squamous_epithelium_female_adult_51_years	chr7	6953942	6953986	6953961	-	High_confidence	8	9	39	2.577521	4.304257	chr7	6950904	6958745	LTR|ERV1|HERVE-int	-	chr7	6952534	6953205	STRG.33080.1	-	6952534	6953205	0.974359
esophagus_squamous_epithelium_female_adult_51_years	chr18	31093567	31093611	31093567	-	RAMPAGE_only	12	12	60	3.965418	4.729737	chr18	31093142	31093519	LINE|L1|L1PA10	-	chr18	31065973	31102004	DSC2|ENST00000251081.6	-	31065973,31068298,31068893,31070725,31071604,31074682,31079846,31080095,31082237,31082925,31086575,31087668,31089438,31091027,31092100,31093558,31101902	31068212,31068344,31069151,31070850,31071841,31074907,31079989,31080352,31082423,31083060,31086742,31087813,31089594,31091147,31092300,31093643,31102004	0.933333
esophagus_squamous_epithelium_female_adult_51_years	chr6	40867661	40867733	40867729	-	High_confidence	268	313	728	48.113733	4.843991	chr6	40861829	40868245	LTR|ERV1|HERVH-int	-	chr6	40857734	40867726	STRG.29439.1	-	40857734,40861326,40867389	40858753,40861432,40867726	0.979396
esophagus_squamous_epithelium_female_adult_53_years	chr6	28354199	28354206	28354199	-	High_confidence	25	26	49	4.129438	4.636264	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324736	28354195	ZSCAN31|ENST00000396838.6	-	28324736,28327382,28329302,28336789,28337755,28341745,28353861,28354130	28326854,28327533,28329714,28336943,28337893,28341792,28353952,28354195	0.755102
esophagus_squamous_epithelium_female_adult_53_years	chr1	209651135	209651136	209651135	-	High_confidence	5	6	7	0.589920	2.521641	chr1	209651125	209651277	SINE|MIR|MIR3	+	chr1	209614869	209651334	LAMB3|NM_001017402.1	-	209614869,209616470,209617409,209617906,209618451,209622535,209622981,209623504,209623839,209625647,209626866,209627382,209628034,209629736,209630614,209632582,209633069,209634446,209637907,209638533,209649963,209650916	209615407,209616624,209617586,209618048,209618659,209622680,209623179,209623725,209624000,209626026,209626978,209627579,209628190,209629925,209630735,209632776,209633133,209634638,209637981,209638648,209650118,209651334	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr7	77990396	77990426	77990396	+	High_confidence	3	3	16	1.348388	3.500000	chr7	77987877	77991087	LINE|L1|L1PBa1	-	chr7	77990383	77994942	AC004990.1|ENST00000431722.1	+	77990383,77990983,77994871	77990677,77991182,77994942	0.562500
esophagus_squamous_epithelium_female_adult_53_years	chr5	90929202	90929213	90929202	+	High_confidence	3	3	6	0.505645	2.584963	chr5	90923630	90929658	LINE|L1|L1PA2	-	chr5	90929227	91164216	STRG.13233.1	+	90929227,90965414,90985343,91072446,91102218,91150029,91153220,91163781	90929398,90965531,90985522,91072604,91102340,91150221,91153398,91164216	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr5	140651849	140651882	140651867	+	RAMPAGE_only	12	12	47	3.960890	4.900230	chr5	140651884	140651935	DNA|hAT-Charlie|MER5A	+	chr5	140648093	140654727	IK|ENST00000502899.2	+	140648093,140648470,140651713,140652087,140652976,140653937,140654515,140654680	140648162,140648537,140651806,140652147,140653144,140654052,140654586,140654727	0.659574
esophagus_squamous_epithelium_female_adult_53_years	chr8	39032736	39032749	39032736	+	RAMPAGE_only	6	6	14	1.179839	3.026987	chr8	39031444	39032803	LINE|L1|L1P2	-	chr8	38997025	39105137	ADAM9|ENST00000481873.7	+	38997025,39007885,39011657,39013964,39016117,39017218,39018852,39021642,39023155,39025802,39026676,39041945,39054480,39055576,39071297,39077227,39082640,39082967,39091258,39101862,39103606	38997160,39007983,39011716,39014043,39016194,39017414,39018918,39021714,39023325,39025884,39026810,39042117,39054573,39055772,39071403,39077411,39082721,39083073,39091346,39101930,39105137	0.714286
esophagus_squamous_epithelium_female_adult_53_years	chr4	86453195	86453235	86453195	-	High_confidence	2	4	18	1.516936	3.292770	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016074	86453196	MAPK10|ENST00000641854.1	-	86016074,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86107352,86159467,86194407,86354644,86453196	0.888889
esophagus_squamous_epithelium_female_adult_53_years	chr11	133855225	133855242	133855225	-	RAMPAGE_only	7	7	16	1.348388	2.608459	chr11	133853332	133855332	LINE|L1|L1PB1	-	chr11	133840621	133845538	SPATA19|NM_174927.2	-	133840621,133842029,133842484,133844245,133844508,133845133,133845368	133840923,133842105,133842562,133844337,133844640,133845190,133845538	0.875000
esophagus_squamous_epithelium_female_adult_53_years	chr8	27977125	27977126	27977125	-	RAMPAGE_only	36	37	44	3.708067	4.091622	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.795455
esophagus_squamous_epithelium_female_adult_53_years	chr20	31566028	31566077	31566076	+	High_confidence	28	35	243	20.478642	5.310292	chr20	31566028	31566111	SINE|MIR|MIR3	+	chr20	31566153	31569567	HM13|ENST00000487281.1	+	31566153,31567639,31569119	31566295,31567806,31569567	0.983539
esophagus_squamous_epithelium_female_adult_53_years	chr12	643627	643636	643627	-	High_confidence	44	54	120	10.112910	4.889614	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.975000
esophagus_squamous_epithelium_female_adult_53_years	chr16	761104	761120	761114	+	High_confidence	11	11	35	2.949599	3.366089	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.942857
esophagus_squamous_epithelium_female_adult_53_years	chr2	39909325	39909329	39909328	+	RAMPAGE_only	11	15	21	1.769759	3.787144	chr2	39909133	39909489	LTR|ERVL-MaLR|THE1D	+	chr2	39917633	40255209	SLC8A1-AS1|NR_038441.1	+	39917633,39922848,40104908,40251683,40254419	39917659,39922889,40104962,40251774,40255209	0.809524
esophagus_squamous_epithelium_female_adult_53_years	chr6	31587251	31587275	31587274	+	High_confidence	10	11	27	2.275405	2.883216	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	0.592593
esophagus_squamous_epithelium_female_adult_53_years	chr15	71781465	71781502	71781501	+	RAMPAGE_only	3	3	8	0.674194	2.750000	chr15	71781091	71781809	LINE|CR1|L3	+	chr15	71547281	71783279	THSD4|ENST00000261862.7	+	71547281,71660529,71780541,71780547	71547481,71660726,71780545,71783279	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr9	39809858	39809884	39809858	-	High_confidence	6	8	18	1.516936	2.939829	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.944444
esophagus_squamous_epithelium_female_adult_53_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	14	14	14	1.179839	3.521641	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr12	109878996	109878997	109878996	+	RAMPAGE_only	5	5	8	0.674194	3.000000	chr12	109878962	109879076	SINE|MIR|MIRb	-	chr12	109900263	109905027	TCHP|ENST00000537218.1	+	109900263,109903026,109903936,109904736	109900426,109903214,109904147,109905027	0.750000
esophagus_squamous_epithelium_female_adult_53_years	chr1	95743370	95743371	95743370	+	RAMPAGE_only	73	73	77	6.489117	5.047577	chr1	95743332	95743584	LINE|L2|L2a	-	chr1	95748730	95759701	STRG.1826.1	+	95748730,95759290	95748790,95759701	0.519481
esophagus_squamous_epithelium_female_adult_53_years	chr3	58526765	58526766	58526765	-	High_confidence	107	108	131	11.039927	5.798460	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	0.923664
esophagus_squamous_epithelium_female_adult_53_years	chrX	48683361	48683363	48683362	+	High_confidence	11	17	19	1.601211	3.195296	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr12	121993094	121993169	121993148	+	RAMPAGE_only	5	5	20	1.685485	4.037401	chr12	121993005	121993967	Retroposon|SVA|SVA_F	+	chr12	121918556	122003927	WDR66|NM_144668.5	+	121918556,121921285,121923621,121931745,121934246,121942533,121942894,121948983,121951479,121954119,121957073,121958271,121958942,121960584,121961977,121966954,121968005,121975243,121975541,121999715,122001496,122003651	121918695,121921683,121923990,121931886,121934356,121942645,121942975,121949061,121951530,121954334,121957268,121958522,121959094,121960758,121962162,121967069,121968169,121975334,121975685,121999944,122001598,122003927	0.550000
esophagus_squamous_epithelium_female_adult_53_years	chr2	241098893	241098900	241098893	-	RAMPAGE_only	4	5	12	1.011291	3.084963	chr2	241098792	241098897	LINE|L2|L2a	-	chr2	241087203	241096070	MTERF4|ENST00000488567.5	-	241087203,241089979,241094276,241094596	241089365,241090044,241094429,241096070	0.750000
esophagus_squamous_epithelium_female_adult_53_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	12	12	12	1.011291	3.022055	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr12	10363964	10363974	10363964	+	High_confidence	30	31	47	3.960890	4.623218	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.978723
esophagus_squamous_epithelium_female_adult_53_years	chr7	107580245	107580267	107580264	+	High_confidence	587	591	2555	215.320704	6.634253	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.959687
esophagus_squamous_epithelium_female_adult_53_years	chr11	71745881	71745915	71745914	+	High_confidence	7	7	32	2.696776	4.116729	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.906250
esophagus_squamous_epithelium_female_adult_53_years	chr17	41757421	41757469	41757421	-	RAMPAGE_only	7	7	19	1.601211	3.531631	chr17	41757254	41757383	DNA|hAT-Tip100|MER91B	-	chr17	41754603	41785155	JUP|ENST00000393930.5	-	41754603,41755729,41756174,41757414,41757633,41758398,41758714,41762982,41764712,41764922,41767378,41768968,41769417,41771646,41784946	41755432,41755895,41756214,41757536,41757784,41758518,41758870,41763321,41764816,41765067,41767580,41769207,41769677,41771862,41785155	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr6	28354041	28354067	28354041	-	High_confidence	7	7	15	1.264114	2.606239	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324735	28354194	STRG.14879.1	-	28324735,28327382,28329302,28336789,28353861	28326854,28327533,28329778,28336943,28354194	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr7	43059494	43059540	43059512	-	RAMPAGE_only	3	3	21	1.769759	3.820889	chr7	43059096	43065116	LINE|L1|L1PA2	+	chr7	42971540	43113931	AC005537.1|ENST00000629291.2	-	42971540,43028337,43044546,43113623	42972848,43028395,43044620,43113931	0.714286
esophagus_squamous_epithelium_female_adult_53_years	chr13	29647326	29647361	29647360	+	High_confidence	6	6	19	1.601211	3.826875	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647662	29655378	STRG.29277.1	+	29647662,29655069	29647724,29655378	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr11	65181200	65181240	65181222	+	High_confidence	6	6	13	1.095565	3.085055	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.923077
esophagus_squamous_epithelium_female_adult_53_years	chr11	77175277	77175303	77175277	+	High_confidence	4	4	12	1.011291	3.022055	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr7	135699753	135699762	135699756	-	High_confidence	7	7	18	1.516936	3.169925	chr7	135699616	135699841	SINE|MIR|MIRb	+	chr7	135681249	135699743	STRG.18792.1	-	135681249,135684123,135685521,135691200,135691547,135692322,135694136,135695367,135699363	135681700,135684261,135685683,135691325,135691645,135692424,135694238,135695487,135699743	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr8	116648828	116648905	116648864	-	RAMPAGE_only	7	7	32	2.696776	3.964735	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.937500
esophagus_squamous_epithelium_female_adult_53_years	chr7	101308293	101308317	101308293	+	High_confidence	5	5	14	1.179839	3.378783	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chrX	16712879	16712923	16712908	-	High_confidence	5	7	24	2.022582	3.470176	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.958333
esophagus_squamous_epithelium_female_adult_53_years	chr2	113117956	113117976	113117970	+	High_confidence	2630	3181	6660	561.266494	7.554798	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117980	113133121	STRG.5844.1	+	113117980,113120065,113121447,113127688,113129575,113131044,113132655	113118028,113120128,113121618,113127740,113129664,113131157,113133121	0.708108
esophagus_squamous_epithelium_female_adult_53_years	chr3	27821565	27821584	27821565	+	RAMPAGE_only	5	5	23	1.938308	2.952102	chr3	27815983	27821983	LINE|L1|L1PA7	-	chr3	27802761	27860327	LINC01980|ENST00000425195.6	+	27802761,27824649,27848700,27860086	27802850,27824748,27848764,27860327	0.956522
esophagus_squamous_epithelium_female_adult_53_years	chr3	46606938	46606948	46606947	-	RAMPAGE_only	6	6	13	1.095565	3.022055	chr3	46606755	46606914	LTR|ERVL-MaLR|MLT1L	-	chr3	46518348	46580099	LRRC2|ENST00000296144.3	-	46518348,46521521,46527425,46529904,46532772,46539044,46545045,46551466,46579936	46519063,46521658,46527581,46530050,46532909,46539201,46545253,46551610,46580099	0.692308
esophagus_squamous_epithelium_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	73	73	73	6.152020	3.463444	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.986301
esophagus_squamous_epithelium_female_adult_53_years	chr10	95503052	95503082	95503052	-	High_confidence	30	30	150	12.641137	5.461644	chr10	95503034	95503135	LTR|ERV1?|LTR103b_Mam	-	chr10	95341583	95503075	STRG.24298.3	-	95341583,95346405,95351208,95354881,95357630,95367649,95381684,95383984,95384237,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95437489,95441125,95491034,95493164,95501783,95502520	95341678,95346452,95351376,95354967,95357803,95367699,95381799,95384114,95384285,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95437555,95441180,95491120,95493286,95502034,95503075	0.980000
esophagus_squamous_epithelium_female_adult_53_years	chr17	7013027	7013044	7013027	+	High_confidence	5	5	13	1.095565	3.022055	chr17	7012918	7013141	SINE|Alu|AluSx	+	chr17	7013230	7014520	RNASEK|ENST00000552321.2	+	7013230,7013665,7014144	7013516,7013742,7014520	0.846154
esophagus_squamous_epithelium_female_adult_53_years	chr17	75786596	75786645	75786616	+	High_confidence	13	13	38	3.202421	4.322631	chr17	75786575	75786885	SINE|Alu|AluSq2	+	chr17	75786621	75808968	STRG.36148.2	+	75786621,75791759,75792312,75793442,75808947	75786908,75792019,75792478,75793531,75808968	0.710526
esophagus_squamous_epithelium_female_adult_53_years	chr3	121919314	121919328	121919314	+	RAMPAGE_only	4	4	13	1.095565	3.026987	chr3	121918873	121919737	LTR|ERV1|LTR27D	-	chr3	121894439	121941252	SLC15A2|ENST00000295605.6	+	121894439,121896405,121897387,121913020,121915226,121915615,121922219,121922774,121923039,121923221,121924350,121924944,121927757,121928420,121928981,121929301,121930839,121931638,121939348,121940383,121940830	121894581,121896493,121897529,121913120,121915317,121915693,121922302,121922861,121923129,121923266,121924383,121925033,121927839,121928555,121929146,121929348,121930950,121931735,121939495,121940488,121941252	0.769231
esophagus_squamous_epithelium_female_adult_53_years	chr20	2325858	2325868	2325858	+	RAMPAGE_only	7	7	12	1.011291	2.918296	chr20	2325789	2325878	SINE|MIR|MIR3	+	chr20	2296000	2341078	TGM3|ENST00000381458.5	+	2296000,2309656,2310177,2311010,2312897,2317067,2317349,2325848,2328119,2332001,2335115,2339853,2340433	2296070,2309830,2310417,2311129,2313026,2317245,2317485,2325952,2328365,2332310,2335273,2339987,2341078	0.916667
esophagus_squamous_epithelium_female_adult_53_years	chr22	35896684	35896689	35896688	-	RAMPAGE_only	11	16	24	2.022582	4.088779	chr22	35896673	35896791	LINE|L2|L2	+	chr22	35743982	35938897	RBFOX2|ENST00000359369.8	-	35743982,35745922,35746472,35750425,35756104,35759887,35761201,35761414,35765422,35768256,35778024,35781599,35809779,35938846	35744249,35745995,35746561,35750457,35756144,35760020,35761294,35761468,35765483,35768349,35778078,35781743,35810004,35938897	0.833333
esophagus_squamous_epithelium_female_adult_53_years	chrX	23883553	23883579	23883553	-	RAMPAGE_only	2	2	11	0.927017	2.663533	chrX	23883103	23883918	LTR|ERV1|LTR1A1	+	chrX	23833362	23880901	APOO|ENST00000439528.5	-	23833362,23840312,23856301,23858641,23868592,23874402,23878914,23880844	23833510,23840377,23856382,23858733,23868688,23874457,23879034,23880901	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr17	2975621	2975667	2975660	+	RAMPAGE_only	14	19	48	4.045164	4.735200	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2963920	3020535	STRG.34429.1	+	2963920,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476	2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020535	0.833333
esophagus_squamous_epithelium_female_adult_53_years	chr21	28090097	28090154	28090131	+	High_confidence	3	3	17	1.432662	3.625000	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28089888	28102790	LINC01697|ENST00000423808.2	+	28089888,28102549	28090521,28102790	0.941176
esophagus_squamous_epithelium_female_adult_53_years	chr16	2205854	2205868	2205867	+	High_confidence	5	5	16	1.348388	3.202820	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr8	17692225	17692242	17692241	-	High_confidence	6	6	25	2.106856	3.434561	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.960000
esophagus_squamous_epithelium_female_adult_53_years	chr8	12488591	12488621	12488614	-	High_confidence	10	10	40	3.370970	4.634184	chr8	12485575	12493402	LTR|ERV1|HERVE-int	-	chr8	12487009	12488629	STRG.19305.1	-	12487009,12488484	12487908,12488629	0.950000
esophagus_squamous_epithelium_female_adult_53_years	chr8	56582878	56582879	56582878	+	RAMPAGE_only	7	7	7	0.589920	2.521641	chr8	56582691	56583072	LTR|ERVL-MaLR|MSTA	+	chr8	56588384	56588787	RPL37P6|ENST00000464216.1	+	56588384	56588787	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr17	11971953	11971954	11971953	+	High_confidence	4	4	7	0.589920	2.521641	chr17	11971755	11972189	LTR|ERV1|LTR7Y	+	chr17	11971979	11976829	STRG.34730.1	+	11971979,11976500	11972335,11976829	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr6	80390961	80390988	80390961	+	RAMPAGE_only	12	13	31	2.612502	3.990509	chr6	80390763	80391236	LTR|ERVL|MLT2A1	+	chr6	80443323	80470124	STRG.15667.2	+	80443323,80453156,80462871,80470079	80443538,80453261,80463072,80470124	0.870968
esophagus_squamous_epithelium_female_adult_53_years	chr1	9894251	9894258	9894251	-	High_confidence	4	4	11	0.927017	2.663533	chr1	9894071	9894347	LINE|L1|L1MC4	-	chr1	9848275	9894327	STRG.256.3	-	9848275,9871186,9871968,9877904,9894137	9850776,9871277,9872088,9877989,9894327	0.818182
esophagus_squamous_epithelium_female_adult_53_years	chr5	119420424	119420465	119420440	+	RAMPAGE_only	20	33	68	5.730649	5.153859	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.852941
esophagus_squamous_epithelium_female_adult_53_years	chr3	139344537	139344548	139344547	+	High_confidence	59	59	103	8.680248	5.125895	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.951456
esophagus_squamous_epithelium_female_adult_53_years	chr16	50396850	50396893	50396878	-	High_confidence	5	9	19	1.601211	3.725481	chr16	50396540	50397080	LTR|ERVL|MLT2A2	-	chr16	50390900	50396899	STRG.33725.2	-	50390900,50396626	50391141,50396899	0.684211
esophagus_squamous_epithelium_female_adult_53_years	chr8	81590110	81590151	81590110	-	High_confidence	14	19	64	5.393552	4.770582	chr8	81589985	81590374	DNA|hAT-Charlie|Charlie14a	+	chr8	81526843	81590115	STRG.20086.1	-	81526843,81529437,81531242,81590052	81527121,81529610,81531373,81590115	0.718750
esophagus_squamous_epithelium_female_adult_53_years	chr5	96172076	96172077	96172076	-	High_confidence	17	17	24	2.022582	3.636842	chr5	96171973	96172420	LTR|ERV1|LTR7	-	chr5	96166091	96171840	STRG.13300.1	-	96166091,96170071,96171797	96166159,96170257,96171840	0.958333
esophagus_squamous_epithelium_female_adult_53_years	chr12	31959160	31959179	31959178	+	High_confidence	8	8	16	1.348388	2.983459	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31981060	KIAA1551|ENST00000540924.5	+	31959407,31960776,31980877	31959491,31960871,31981060	0.812500
esophagus_squamous_epithelium_female_adult_53_years	chr9	92077156	92077220	92077157	-	RAMPAGE_only	10	19	61	5.140729	4.760507	chr9	92072526	92078223	LTR|ERV1|HERVH-int	+	chr9	92028457	92080076	SPTLC1|ENST00000646481.1	-	92028457,92029179,92034809,92038247,92045998,92046274,92047171,92047612,92049959,92055404,92059178,92067965,92076797,92080015	92028757,92029346,92034883,92038365,92046053,92046334,92047268,92047708,92050067,92055494,92059308,92068098,92077035,92080076	0.983607
esophagus_squamous_epithelium_female_adult_53_years	chr15	40894518	40894519	40894518	+	High_confidence	5	5	7	0.589920	2.521641	chr15	40894565	40894630	LINE|CR1|X6A_LINE	+	chr15	40894466	40902861	VPS18|ENST00000558474.1	+	40894466,40895937,40898906,40902615	40894859,40896079,40898998,40902861	0.714286
esophagus_squamous_epithelium_female_adult_53_years	chr9	72295108	72295109	72295108	+	RAMPAGE_only	8	8	8	0.674194	2.500000	chr9	72295156	72295467	SINE|Alu|AluJb	+	chr9	73151730	73170393	ANXA1|NM_000700.2	+	73151730,73158521,73158694,73159328,73160262,73160802,73162781,73163475,73165115,73166096,73167496,73169031,73170050	73151924,73158601,73158803,73159423,73160376,73160893,73162861,73163532,73165209,73166192,73167555,73169154,73170393	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr4	102431245	102431248	102431247	-	High_confidence	5	9	14	1.179839	3.238901	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.928571
esophagus_squamous_epithelium_female_adult_53_years	chr6	28354099	28354102	28354101	-	High_confidence	4	6	8	0.674194	2.500000	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329610	28354065	ZSCAN31|ENST00000444081.5	-	28329610,28336789,28337798,28353861	28329714,28336943,28337893,28354065	0.625000
esophagus_squamous_epithelium_female_adult_53_years	chr7	134549089	134549114	134549113	+	RAMPAGE_only	7	7	16	1.348388	3.077820	chr7	134549070	134551552	LTR|ERV1|HERVS71-int	+	chr7	134564787	134570474	AKR1B15|ENST00000467156.1	+	134564787,134568157,134569412	134565546,134568325,134570474	0.750000
esophagus_squamous_epithelium_female_adult_53_years	chr11	3477049	3477079	3477067	-	High_confidence	11	11	38	3.202421	4.229327	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3476036	3476259	STRG.24952.1	-	3476036	3476259	0.815789
esophagus_squamous_epithelium_female_adult_53_years	chr6	82101686	82101718	82101705	-	RAMPAGE_only	4	4	18	1.516936	3.572431	chr6	82101303	82107312	LINE|L1|L1PA2	+	chr6	81845184	81933480	LINC02542|ENST00000418567.1	-	81845184,81928856,81933428	81845909,81928901,81933480	0.777778
esophagus_squamous_epithelium_female_adult_53_years	chr19	45450760	45450766	45450765	-	High_confidence	5	5	11	0.927017	2.913977	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.636364
esophagus_squamous_epithelium_female_adult_53_years	chr2	166185025	166185032	166185025	+	RAMPAGE_only	3	3	7	0.589920	2.521641	chr2	166184665	166185205	LINE|L2|L2a	-	chr2	166149180	166294588	AC010127.1|ENST00000630020.2	+	166149180,166171386,166199638,166248194,166249342,166251833,166277087,166294564	166149572,166171558,166199818,166248276,166249384,166251912,166277247,166294588	0.714286
esophagus_squamous_epithelium_female_adult_53_years	chr2	27691791	27691795	27691794	+	High_confidence	5	5	12	1.011291	2.913977	chr2	27691589	27691889	SINE|Alu|AluSz	-	chr2	27691557	27694973	SLC4A1AP|ENST00000492196.1	+	27691557,27694633	27693754,27694973	0.833333
esophagus_squamous_epithelium_female_adult_53_years	chr1	89272850	89272883	89272859	-	High_confidence	14	14	100	8.427425	4.960659	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.980000
esophagus_squamous_epithelium_female_adult_53_years	chr9	121498589	121498633	121498622	-	RAMPAGE_only	5	7	22	1.854033	3.039633	chr9	121498508	121498653	SINE|MIR|MIRb	-	chr9	121444990	121499757	GGTA1P|ENST00000495328.5	-	121444990,121455654,121460103,121461251,121463292,121467842,121479065,121499649	121447597,121455841,121460219,121461317,121463328,121467931,121479334,121499757	0.818182
esophagus_squamous_epithelium_female_adult_53_years	chr2	72693331	72693354	72693353	-	RAMPAGE_only	9	9	16	1.348388	2.606239	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.937500
esophagus_squamous_epithelium_female_adult_53_years	chr1	183590784	183590818	183590784	-	High_confidence	4	4	15	1.264114	3.373557	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555562	183590876	NCF2|ENST00000367536.5	-	183555562,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590876	0.866667
esophagus_squamous_epithelium_female_adult_53_years	chr12	121993259	121993265	121993259	+	RAMPAGE_only	6	6	14	1.179839	3.521641	chr12	121993005	121993967	Retroposon|SVA|SVA_F	+	chr12	121996885	122003807	WDR66|ENST00000428465.2	+	121996885,122001496,122003651	121999944,122001598,122003807	0.500000
esophagus_squamous_epithelium_female_adult_53_years	chr8	12522756	12522767	12522756	+	High_confidence	3	3	8	0.674194	2.750000	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12522784	12566155	STRG.19311.4	+	12522784,12530942,12565885	12522846,12531031,12566155	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr15	67166530	67166533	67166530	+	High_confidence	35	35	65	5.477826	4.759358	chr15	67166449	67166543	LINE|L2|L2b	-	chr15	67166530	67181420	SMAD3|ENST00000558428.5	+	67166530,67170553,67181240	67166853,67170604,67181420	0.846154
esophagus_squamous_epithelium_female_adult_53_years	chr1	209429012	209429106	209429012	+	High_confidence	9	11	97	8.174602	4.954718	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.886598
esophagus_squamous_epithelium_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	702	809	1408	118.658142	5.002950	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.983665
esophagus_squamous_epithelium_female_adult_53_years	chr14	81427441	81427467	81427441	-	High_confidence	4	4	19	1.601211	3.260828	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr1	150729826	150729831	150729826	-	High_confidence	4	5	8	0.674194	2.500000	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150697994	150729639	STRG.2471.1	-	150697994,150700111,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150717137,150719472,150729148,150729573	150698734,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150717282,150719541,150729225,150729639	0.625000
esophagus_squamous_epithelium_female_adult_53_years	chr19	51795150	51795177	51795150	+	High_confidence	5	5	15	1.264114	3.323231	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795145	51826190	FPR3|NM_002030.4	+	51795145,51823738	51795331,51826190	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr18	39800293	39800314	39800293	-	High_confidence	12	12	58	4.887906	4.979012	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.655172
esophagus_squamous_epithelium_female_adult_53_years	chr14	73463624	73463630	73463629	-	High_confidence	5	5	10	0.842742	2.725481	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73458849	73463635	AC005280.2|ENST00000647202.1	-	73458849,73462528,73463474	73459305,73462689,73463635	0.500000
esophagus_squamous_epithelium_female_adult_53_years	chr2	55618850	55618873	55618850	-	High_confidence	7	8	15	1.264114	3.039149	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.866667
esophagus_squamous_epithelium_female_adult_53_years	chr5	176411456	176411459	176411458	-	RAMPAGE_only	774	928	1172	98.769419	6.398052	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.848976
esophagus_squamous_epithelium_female_adult_53_years	chr19	51027569	51027668	51027667	-	High_confidence	110	113	607	51.154469	7.037429	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.868204
esophagus_squamous_epithelium_female_adult_53_years	chr2	87469947	87469950	87469949	+	High_confidence	12	16	19	1.601211	3.127987	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87469949	87521413	CYTOR|ENST00000437561.1	+	87469949,87470149,87521206	87470042,87470304,87521413	0.578947
esophagus_squamous_epithelium_female_adult_53_years	chr8	26395611	26395612	26395611	+	High_confidence	136	152	184	15.506462	5.210421	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.668478
esophagus_squamous_epithelium_female_adult_53_years	chr13	43062178	43062221	43062195	+	RAMPAGE_only	4	4	18	1.516936	2.654255	chr13	43062071	43062490	LTR|ERVL|LTR33	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.944444
esophagus_squamous_epithelium_female_adult_53_years	chr17	51153837	51153859	51153837	+	High_confidence	3	3	7	0.589920	2.521641	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51154043	51155759	NME1|ENST00000456492.1	+	51154043,51155650	51154444,51155759	0.571429
esophagus_squamous_epithelium_female_adult_53_years	chr20	3795750	3795781	3795780	+	High_confidence	5	5	12	1.011291	2.732159	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.916667
esophagus_squamous_epithelium_female_adult_53_years	chr3	14017552	14017596	14017552	+	High_confidence	3	5	14	1.179839	2.873141	chr3	14012549	14017955	LINE|L1|L1PB1	-	chr3	14017552	14065984	TPRXL|ENST00000429201.6	+	14017552,14057137,14063378,14064019	14017665,14057184,14063508,14065984	0.714286
esophagus_squamous_epithelium_female_adult_53_years	chr12	3215196	3215241	3215196	+	RAMPAGE_only	5	5	21	1.769759	3.195296	chr12	3215140	3215247	SINE|MIR|MIRc	+	chr12	3273172	3286558	STRG.27032.3	+	3273172,3278497,3278991,3280381,3281197,3281733,3283044	3273246,3278612,3279066,3280483,3281329,3281817,3286558	0.904762
esophagus_squamous_epithelium_female_adult_53_years	chr20	50267479	50267498	50267497	+	High_confidence	6	6	10	0.842742	2.646439	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267498	50278427	SMIM25|ENST00000445003.5	+	50267498,50277490,50278176	50267663,50277613,50278427	0.900000
esophagus_squamous_epithelium_female_adult_53_years	chr5	96172015	96172040	96172039	-	High_confidence	8	10	18	1.516936	3.454822	chr5	96171973	96172420	LTR|ERV1|LTR7	-	chr5	96166091	96171840	STRG.13300.1	-	96166091,96170071,96171797	96166159,96170257,96171840	0.833333
esophagus_squamous_epithelium_female_adult_53_years	chr16	12117435	12117485	12117435	+	High_confidence	59	66	191	16.096381	5.542294	chr16	12117445	12117786	LINE|L1|L1MB5	+	chr16	12117447	12574221	STRG.33256.2	+	12117447,12126632,12129629,12199600,12277932,12356162,12398445,12403447,12477718,12524701,12568505	12117643,12126696,12129758,12199683,12278036,12356279,12398501,12403529,12477859,12524841,12574221	0.905759
esophagus_squamous_epithelium_female_adult_53_years	chr19	9700673	9700674	9700673	-	High_confidence	286	307	324	27.304856	5.029367	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9689923	9700672	STRG.37454.6	-	9689923,9693693,9694778,9696093,9700000,9700387	9691266,9693820,9694867,9696248,9700086,9700672	0.944444
esophagus_squamous_epithelium_female_adult_53_years	chr14	80231057	80231058	80231057	-	High_confidence	570	572	613	51.660114	7.395322	chr14	80230830	80231256	LTR|ERVL|MLT2A1	-	chr14	80197524	80231054	DIO2|NM_000793.5	-	80197524,80211250,80215971,80230900	80203288,80211525,80216150,80231054	0.890701
esophagus_squamous_epithelium_female_adult_53_years	chr7	134565077	134565109	134565108	+	High_confidence	5	5	10	0.842742	3.121928	chr7	134564837	134565429	LTR|ERV1|LTR10D	+	chr7	134564787	134570474	AKR1B15|ENST00000467156.1	+	134564787,134568157,134569412	134565546,134568325,134570474	0.900000
esophagus_squamous_epithelium_female_adult_53_years	chr19	2028744	2028772	2028744	-	RAMPAGE_only	3	4	14	1.179839	3.334679	chr19	2028707	2028826	LINE|CR1|L3b	-	chr19	1985437	2015724	BTBD2|ENST00000255608.8	-	1985437,1986829,1987165,1987499,1990003,1990716,1993019,1997343,2015296	1986649,1986976,1987253,1987692,1990201,1990822,1993176,1997463,2015724	0.928571
esophagus_squamous_epithelium_female_adult_53_years	chr12	104030726	104030754	104030726	+	High_confidence	35	37	63	5.309278	5.034526	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.920635
esophagus_squamous_epithelium_female_adult_53_years	chr11	73217605	73217645	73217644	+	High_confidence	9	9	34	2.865324	3.976450	chr11	73217526	73217658	LINE|L2|L2b	-	chr11	73218297	73235932	P2RY2|ENST00000393597.6	+	73218297,73227980,73234155	73218432,73228175,73235932	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr3	189309856	189309867	189309866	+	High_confidence	22	22	39	3.286696	3.889779	chr3	189309787	189309871	LINE|RTE-BovB|MamRTE1	+	chr3	189309893	189315595	TPRG1|ENST00000481307.1	+	189309893,189310385,189315492	189310177,189310539,189315595	0.512821
esophagus_squamous_epithelium_female_adult_53_years	chr3	135965649	135965758	135965741	+	High_confidence	12	12	140	11.798395	5.446988	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.978571
esophagus_squamous_epithelium_female_adult_53_years	chr15	71546885	71546889	71546887	+	High_confidence	11	23	33	2.781050	4.354852	chr15	71546806	71547005	SINE|MIR|MIR3	-	chr15	71547201	71783383	THSD4|NM_001286429.1	+	71547201,71660529,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71771063,71777231	71547481,71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71771208,71783383	0.848485
esophagus_squamous_epithelium_female_adult_53_years	chr19	51018587	51018592	51018587	-	High_confidence	4	4	9	0.758468	2.500000	chr19	51018434	51018728	SINE|Alu|AluYc	+	chr19	51014509	51018849	KLK10|ENST00000601467.1	-	51014509,51015416,51015881,51017109,51018454	51014952,51015550,51016156,51017290,51018849	0.888889
esophagus_squamous_epithelium_female_adult_53_years	chr1	47004182	47004183	47004182	+	High_confidence	23	25	34	2.865324	4.294246	chr1	47003946	47004346	LTR|ERV1|MER51B	+	chr1	47004239	47050754	CYP4X1|NM_001320290.1	+	47004239,47029989,47031435,47033240,47035805,47036016,47038659,47039341,47046466,47048564,47049421,47049999	47004369,47030131,47031480,47033368,47035933,47036171,47038766,47039532,47046600,47048629,47049504,47050754	0.970588
esophagus_squamous_epithelium_female_adult_53_years	chr12	121993527	121993572	121993571	+	RAMPAGE_only	22	22	120	10.112910	4.777374	chr12	121993005	121993967	Retroposon|SVA|SVA_F	+	chr12	122001703	122003927	WDR66|ENST00000545988.1	+	122001703,122003651	122001919,122003927	0.775000
esophagus_squamous_epithelium_female_adult_53_years	chr16	83803784	83803805	83803804	-	High_confidence	6	6	16	1.348388	2.549255	chr16	83803565	83803892	DNA|hAT-Charlie|MER113	-	chr16	83789966	83803528	AC009119.1|ENST00000565714.5	-	83789966,83803434	83790204,83803528	0.562500
esophagus_squamous_epithelium_female_adult_53_years	chr3	217534	217571	217565	+	High_confidence	8	20	53	4.466535	5.034432	chr3	217318	217820	LINE|L2|L2a	-	chr3	217534	409402	STRG.7592.1	+	217534,244612,319682,325958,328166,340793,341911,342983,344588,349358,354639,360283,361698,363216,365949,377817,382178,382473,383815,389251,390700,390954,391674,394692,399016,401625,405494	217700,244692,319867,326064,328354,340916,342082,343031,344709,349543,354771,360424,361810,363383,366115,377942,382280,382671,383886,389474,390816,391159,391797,394872,399148,401698,409402	0.698113
esophagus_squamous_epithelium_female_adult_53_years	chr4	8436023	8436026	8436023	-	High_confidence	29	34	63	5.309278	5.306412	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366711	8436030	STRG.10542.3	-	8366711,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8435922	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8436030	0.888889
esophagus_squamous_epithelium_female_adult_53_years	chr3	11225885	11225915	11225905	-	High_confidence	6	6	28	2.359679	3.794336	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.500000
esophagus_squamous_epithelium_female_adult_53_years	chr8	32927963	32927977	32927976	+	RAMPAGE_only	38	38	78	6.573391	4.731807	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.948718
esophagus_squamous_epithelium_female_adult_53_years	chr3	169447782	169447794	169447789	+	High_confidence	7	7	30	2.528227	4.189898	chr3	169447527	169447947	LINE|L2|L2c	-	chr3	169447866	169477052	LOC105374205|NR_134932.1	+	169447866,169463943,169467033,169470144,169476885	169447935,169464122,169467100,169470197,169477052	0.900000
esophagus_squamous_epithelium_female_adult_53_years	chr12	12927716	12927751	12927733	+	High_confidence	20	25	80	6.741940	5.265312	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.900000
esophagus_squamous_epithelium_female_adult_53_years	chr2	240022231	240022253	240022240	-	RAMPAGE_only	3	3	16	1.348388	2.577820	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr18	63423991	63423992	63423991	-	RAMPAGE_only	42	55	55	4.635084	4.385995	chr18	63423881	63424037	LTR|ERV1|LTR8	+	chr18	63422587	63422989	STRG.37000.1	-	63422587	63422989	0.781818
esophagus_squamous_epithelium_female_adult_53_years	chr20	8600707	8600726	8600707	+	High_confidence	7	7	23	1.938308	3.827910	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.695652
esophagus_squamous_epithelium_female_adult_53_years	chr2	31254108	31254109	31254108	+	High_confidence	217	221	271	22.838321	6.483487	chr2	31254076	31254207	SINE|MIR|MIRc	-	chr2	31254139	31269447	STRG.4661.3	+	31254139,31254836,31260509,31261548,31266176	31254221,31254991,31260922,31261713,31269447	0.933579
esophagus_squamous_epithelium_female_adult_53_years	chr1	97904658	97904676	97904675	-	RAMPAGE_only	10	10	34	2.865324	4.359378	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.911765
esophagus_squamous_epithelium_female_adult_53_years	chr11	115813681	115813720	115813719	-	High_confidence	5	5	11	0.927017	2.921928	chr11	115813486	115813845	LTR|ERVL-MaLR|THE1D	-	chr11	115808597	115813643	STRG.26658.1	-	115808597,115813568	115808828,115813643	0.909091
esophagus_squamous_epithelium_female_adult_53_years	chr11	16878647	16878710	16878652	-	High_confidence	22	22	142	11.966943	5.284766	chr11	16878610	16878767	SINE|Alu|AluSx	-	chr11	16851197	16878699	STRG.25197.6	-	16851197,16852282,16854888,16855802,16871098,16878422	16851291,16852355,16854993,16855914,16871182,16878699	0.943662
esophagus_squamous_epithelium_female_adult_53_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	5	5	8	0.674194	2.500000	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr4	8436138	8436182	8436138	+	High_confidence	23	23	46	3.876615	4.399677	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8436139	8439301	TRMT44|ENST00000532937.1	+	8436139,8438791	8436399,8439301	0.934783
esophagus_squamous_epithelium_female_adult_53_years	chr10	34973970	34974007	34974006	+	High_confidence	6	6	20	1.685485	3.846439	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34973983	34975576	AL392046.2|ENST00000635301.1	+	34973983,34974193,34974657	34974088,34974282,34975576	0.650000
esophagus_squamous_epithelium_female_adult_53_years	chr12	91179456	91179463	91179462	-	High_confidence	4693	4836	7701	648.995986	7.636823	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.893261
esophagus_squamous_epithelium_female_adult_53_years	chr2	71050189	71050221	71050189	+	RAMPAGE_only	6	6	16	1.348388	3.280639	chr2	71048568	71050605	LTR|ERV1|HERVE-int	+	chr2	71055526	71056003	OR7E62P|ENST00000456741.1	+	71055526	71056003	0.500000
esophagus_squamous_epithelium_female_adult_53_years	chr19	5850837	5850881	5850869	-	High_confidence	9	9	39	3.286696	3.810144	chr19	5850730	5850957	SINE|Alu|AluJo	+	chr19	5844518	5851449	FUT3|ENST00000589714.1	-	5844518,5846425,5851389	5844851,5846599,5851449	0.871795
esophagus_squamous_epithelium_female_adult_53_years	chr5	55378147	55378148	55378147	+	RAMPAGE_only	5	5	8	0.674194	2.750000	chr5	55377896	55378193	LTR|ERVL|MER21A	+	chr5	55308000	55425106	MTREX|ENST00000506750.5	+	55308000,55327715,55328698,55340009,55341680,55343330,55344521,55345093,55347012,55349572,55350918,55353167,55358572,55366724,55378313,55379126,55387973,55397415,55400232,55405424,55410523,55414181,55415969,55422877,55424719	55308147,55327778,55328811,55340184,55341771,55343455,55344620,55345196,55347144,55349652,55351029,55353269,55358698,55366875,55378486,55379195,55388102,55397526,55400421,55405588,55410629,55414238,55416132,55422982,55425106	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr10	103890267	103890286	103890267	-	RAMPAGE_only	6	6	21	1.769759	3.384184	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103892375	STRG.24517.12	-	103882554,103889071,103892296	103882841,103889144,103892375	0.761905
esophagus_squamous_epithelium_female_adult_53_years	chr2	200889293	200889335	200889293	-	High_confidence	9	9	31	2.612502	4.324849	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889276	PPIL3|ENST00000465823.5	-	200870955,200876918,200881420,200885697,200887612,200888955	200871521,200877037,200881488,200885772,200887685,200889276	0.741935
esophagus_squamous_epithelium_female_adult_53_years	chr1	21834132	21834156	21834155	-	RAMPAGE_only	5	5	14	1.179839	3.085055	chr1	21833996	21834157	SINE|MIR|MIRb	-	chr1	21833115	21836917	HSPG2|ENST00000471322.2	-	21833115,21833466,21833815,21834678,21836801	21833384,21833614,21833925,21835637,21836917	0.714286
esophagus_squamous_epithelium_female_adult_53_years	chr10	110835177	110835178	110835177	+	High_confidence	7	7	10	0.842742	2.725481	chr10	110835193	110835289	SINE|MIR|MIR	+	chr10	110835177	110836258	RBM20|ENST00000465774.2	+	110835177,110835867	110835691,110836258	0.800000
esophagus_squamous_epithelium_female_adult_53_years	chr14	95146673	95146674	95146673	-	RAMPAGE_only	23	23	32	2.696776	3.777518	chr14	95146085	95146813	LTR|ERV1|LTR27C	+	chr14	95086228	95141718	DICER1|ENST00000393063.5	-	95086228,95091033,95091202,95093887,95095824,95099779,95103345,95105070,95105677,95106040,95107607,95107879,95108323,95111316,95112171,95113091,95115666,95116452,95117621,95124195,95126579,95129471,95130057,95131508,95132514,95133314,95140658,95141682	95090663,95091109,95091365,95094156,95096713,95099935,95104126,95105246,95105783,95106223,95107761,95108093,95108503,95111456,95112247,95113224,95115821,95116695,95117754,95124668,95126748,95129632,95130192,95131639,95132677,95133503,95140759,95141718	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr13	29685584	29685636	29685584	+	High_confidence	35	36	80	6.741940	4.599145	chr13	29685401	29685796	LTR|ERVL-MaLR|MLT1H	+	chr13	29685602	29697964	STRG.29279.1	+	29685602,29695206,29697113,29697541	29685729,29695402,29697226,29697964	0.962500
esophagus_squamous_epithelium_female_adult_53_years	chr12	14665635	14665643	14665635	+	High_confidence	5	5	9	0.758468	3.169925	chr12	14665652	14665749	LINE|L2|L2a	+	chr12	14665654	14757963	AC010168.1|ENST00000501178.2	+	14665654,14665858,14672265,14718034,14757594	14665697,14666013,14672314,14718075,14757963	0.555556
esophagus_squamous_epithelium_female_adult_53_years	chr6	31587007	31587010	31587009	+	High_confidence	7	9	12	1.011291	3.251629	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr17	47067498	47067518	47067512	-	High_confidence	27	41	152	12.809686	4.810612	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.940789
esophagus_squamous_epithelium_female_adult_53_years	chr14	102235451	102235459	102235451	-	High_confidence	4	4	14	1.179839	3.182006	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr17	60887049	60887084	60887070	+	High_confidence	9	9	34	2.865324	4.271371	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.970588
esophagus_squamous_epithelium_female_adult_53_years	chr1	12409844	12409855	12409854	+	RAMPAGE_only	3	3	10	0.842742	2.725481	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.800000
esophagus_squamous_epithelium_female_adult_53_years	chr7	6590248	6590299	6590248	+	High_confidence	2	3	12	1.011291	3.022055	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr19	46203082	46203083	46203082	-	High_confidence	97	99	105	8.848796	4.402129	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.723810
esophagus_squamous_epithelium_female_adult_53_years	chr4	81154201	81154222	81154213	-	High_confidence	5	6	13	1.095565	3.026987	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr1	95743024	95743098	95743095	+	RAMPAGE_only	15	15	60	5.056455	4.843983	chr1	95737199	95743135	LINE|L1|L1PB1	-	chr1	95748730	95759701	STRG.1826.1	+	95748730,95759290	95748790,95759701	0.750000
esophagus_squamous_epithelium_female_adult_53_years	chr17	41521752	41521776	41521752	-	High_confidence	4	4	11	0.927017	2.846439	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41513756	41521774	STRG.35492.9	-	41513756,41514648,41515471,41515884,41516103,41516807,41517082,41518329,41521684	41514120,41514674,41515692,41516010,41516265,41516964,41517165,41519872,41521774	0.818182
esophagus_squamous_epithelium_female_adult_53_years	chr17	4143199	4143215	4143199	+	High_confidence	75	77	167	14.073799	5.180528	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.982036
esophagus_squamous_epithelium_female_adult_53_years	chr22	50757247	50757248	50757247	+	High_confidence	8	8	12	1.011291	3.084963	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.916667
esophagus_squamous_epithelium_female_adult_53_years	chr9	121313980	121314021	121314020	+	RAMPAGE_only	8	8	51	4.297987	4.262359	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr10	103746776	103746827	103746808	+	High_confidence	13	15	97	8.174602	5.282691	chr10	103746609	103747070	LINE|L2|L2b	+	chr10	103746792	103754466	SH3PXD2A-AS1|ENST00000625265.1	+	103746792,103749781,103753843	103747096,103749920,103754466	0.927835
esophagus_squamous_epithelium_female_adult_53_years	chr1	34754775	34754799	34754777	+	High_confidence	10	21	42	3.539518	4.615312	chr1	34754671	34754841	SINE|MIR|MIR	-	chr1	34755046	34758512	GJB5|NM_005268.3	+	34755046,34757306	34755195,34758512	0.928571
esophagus_squamous_epithelium_female_adult_53_years	chr2	229232040	229232054	229232053	-	High_confidence	27	28	50	4.213712	4.733661	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.980000
esophagus_squamous_epithelium_female_adult_53_years	chr6	37320182	37320183	37320182	+	RAMPAGE_only	25	29	31	2.612502	3.331613	chr6	37320221	37320448	SINE|MIR|MIR	+	chr6	37282464	37332964	STRG.15178.2	+	37282464,37282881,37284335,37287006,37291242,37312917,37313815,37316702,37317110,37331043	37282504,37282952,37284464,37287072,37291357,37313024,37313891,37316830,37317206,37332964	0.935484
esophagus_squamous_epithelium_female_adult_53_years	chr2	171433128	171433148	171433147	-	High_confidence	8	8	24	2.022582	3.414441	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171339330	171433532	STRG.6420.12	-	171339330,171360421,171414602,171433025	171339554,171360513,171414726,171433532	0.916667
esophagus_squamous_epithelium_female_adult_53_years	chr1	150729709	150729734	150729726	-	High_confidence	7	7	18	1.516936	3.725481	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150697994	150729639	STRG.2471.1	-	150697994,150700111,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150717137,150719472,150729148,150729573	150698734,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150717282,150719541,150729225,150729639	0.666667
esophagus_squamous_epithelium_female_adult_53_years	chr2	174410023	174410098	174410066	+	High_confidence	3	3	14	1.179839	2.950212	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410081	174427895	SCRN3|ENST00000549848.5	+	174410081,174422884,174424474,174427712	174410503,174423047,174424649,174427895	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr20	33019747	33019750	33019747	+	RAMPAGE_only	6	10	16	1.348388	3.139572	chr20	33019794	33020245	LINE|L2|L2b	+	chr20	33007599	33023709	BPIFB2|ENST00000170150.3	+	33007599,33008540,33011023,33012802,33013809,33015435,33017041,33018258,33018636,33019061,33019579,33020327,33020541,33021280,33021722,33023341	33007760,33008683,33011117,33012907,33013956,33015496,33017102,33018350,33018822,33019115,33019750,33020395,33020587,33021344,33021799,33023709	0.937500
esophagus_squamous_epithelium_female_adult_53_years	chr5	133064420	133064445	133064444	+	RAMPAGE_only	26	26	86	7.247585	4.243881	chr5	133064223	133064516	SINE|Alu|AluSx	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.848837
esophagus_squamous_epithelium_female_adult_53_years	chr16	8842144	8842154	8842153	+	High_confidence	8	8	14	1.179839	3.392747	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.857143
esophagus_squamous_epithelium_female_adult_53_years	chrX	5726324	5726325	5726324	-	High_confidence	39	42	47	3.960890	4.147818	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.702128
esophagus_squamous_epithelium_female_adult_53_years	chr1	174874418	174874441	174874438	+	High_confidence	8	8	35	2.949599	4.233947	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.628571
esophagus_squamous_epithelium_female_adult_53_years	chr16	63618044	63618046	63618045	-	High_confidence	14	20	29	2.443953	4.116265	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.827586
esophagus_squamous_epithelium_female_adult_53_years	chr22	26536487	26536563	26536562	-	RAMPAGE_only	47	51	198	16.686301	4.885943	chr22	26536554	26536678	SINE|MIR|MIR1_Amn	+	chr22	26525745	26565368	TPST2|ENST00000398110.6	-	26525745,26528213,26532694,26536287,26540788,26544603,26565223	26526267,26528262,26532745,26536486,26541718,26544675,26565368	0.969697
esophagus_squamous_epithelium_female_adult_53_years	chr2	241098858	241098866	241098858	-	RAMPAGE_only	10	10	17	1.432662	3.616875	chr2	241098792	241098897	LINE|L2|L2a	-	chr2	241087203	241096070	MTERF4|ENST00000488567.5	-	241087203,241089979,241094276,241094596	241089365,241090044,241094429,241096070	0.705882
esophagus_squamous_epithelium_female_adult_53_years	chr9	92078001	92078005	92078001	-	RAMPAGE_only	3	3	9	0.758468	2.500000	chr9	92072526	92078223	LTR|ERV1|HERVH-int	+	chr9	92028457	92080076	SPTLC1|ENST00000646481.1	-	92028457,92029179,92034809,92038247,92045998,92046274,92047171,92047612,92049959,92055404,92059178,92067965,92076797,92080015	92028757,92029346,92034883,92038365,92046053,92046334,92047268,92047708,92050067,92055494,92059308,92068098,92077035,92080076	0.777778
esophagus_squamous_epithelium_female_adult_53_years	chr7	7566046	7566052	7566051	-	High_confidence	5	5	11	0.927017	2.921928	chr7	7565778	7566082	SINE|Alu|AluSc	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.818182
esophagus_squamous_epithelium_female_adult_53_years	chr9	18702070	18702071	18702070	-	RAMPAGE_only	12	13	14	1.179839	2.931209	chr9	18701896	18702263	LTR|ERVL-MaLR|THE1B	-	chr9	18657175	18694019	STRG.21234.1	-	18657175,18670172,18693959	18657739,18670287,18694019	0.714286
esophagus_squamous_epithelium_female_adult_53_years	chr1	54200000	54200030	54200000	-	High_confidence	13	14	36	3.033873	3.961320	chr1	54199790	54199971	SINE|MIR|MIRb	-	chr1	54172335	54200010	CYB5RL|ENST00000421415.5	-	54172335,54179148,54184160,54187651,54195418,54196368,54199975	54174822,54179352,54184265,54187739,54195715,54196491,54200010	0.861111
esophagus_squamous_epithelium_female_adult_53_years	chr2	187520611	187520612	187520611	-	High_confidence	24	25	25	2.106856	3.198120	chr2	187517160	187520609	LINE|L1|L1P3	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.960000
esophagus_squamous_epithelium_female_adult_53_years	chr10	84172094	84172095	84172094	-	High_confidence	51	51	58	4.887906	4.485300	chr10	84171986	84172465	LTR|ERV1|LTR2B	-	chr10	84167227	84172093	CERNA2|ENST00000647830.1	-	84167227,84171721	84168729,84172093	0.517241
esophagus_squamous_epithelium_female_adult_53_years	chr1	19344364	19344417	19344364	-	RAMPAGE_only	5	5	19	1.601211	2.885513	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.947368
esophagus_squamous_epithelium_female_adult_53_years	chr2	58113211	58113212	58113211	+	High_confidence	12	12	18	1.516936	2.668839	chr2	58113028	58113330	SINE|Alu|AluSg	+	chr2	58113349	58164010	STRG.4963.5	+	58113349,58123100,58131807,58135140,58139665,58146315,58154753,58159348	58113474,58123233,58131928,58135199,58139832,58146474,58154802,58164010	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr10	45000503	45000504	45000503	+	High_confidence	4	4	7	0.589920	2.521641	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr19	5848767	5848772	5848767	-	High_confidence	231	232	418	35.226636	5.313323	chr19	5847625	5849489	LTR|ERV1|HERVH-int	+	chr19	5844539	5848905	FUT3|ENST00000587048.1	-	5844539,5846425,5848833	5844851,5846618,5848905	0.732057
esophagus_squamous_epithelium_female_adult_53_years	chr17	41503794	41503799	41503798	-	RAMPAGE_only	6	6	15	1.264114	3.521641	chr17	41503757	41503990	DNA|hAT-Charlie|MER30	-	chr17	41500980	41505597	KRT13|ENST00000246635.7	-	41500980,41501718,41502373,41502686,41502936,41503286,41503642,41505055	41501362,41501744,41502594,41502812,41503098,41503443,41503725,41505597	0.933333
esophagus_squamous_epithelium_female_adult_53_years	chr6	43013392	43013393	43013392	-	High_confidence	16	16	17	1.432662	3.625000	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.941176
esophagus_squamous_epithelium_female_adult_53_years	chr19	9140390	9140422	9140417	+	High_confidence	6	6	25	2.106856	3.893661	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.880000
esophagus_squamous_epithelium_female_adult_53_years	chr9	39810023	39810084	39810023	-	High_confidence	4	4	30	2.528227	3.964735	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.500000
esophagus_squamous_epithelium_female_adult_53_years	chr4	75127183	75127231	75127224	-	High_confidence	68	86	319	26.883485	5.737715	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75080626	75127234	STRG.11176.1	-	75080626,75081752,75084588,75121924,75127065	75080665,75082357,75084703,75122019,75127234	0.984326
esophagus_squamous_epithelium_female_adult_53_years	chr19	3062922	3062983	3062924	-	High_confidence	15	26	96	8.090328	5.395657	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.968750
esophagus_squamous_epithelium_female_adult_53_years	chr8	30812418	30812475	30812474	-	High_confidence	5	7	22	1.854033	3.170135	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr9	73154059	73154080	73154059	+	RAMPAGE_only	5	6	9	0.758468	2.947703	chr9	73153736	73154131	LINE|L2|L2c	-	chr9	73151901	73160338	ANXA1|ENST00000415424.5	+	73151901,73154197,73158521,73158694,73159328,73160262	73151924,73154340,73158601,73158803,73159423,73160338	0.666667
esophagus_squamous_epithelium_female_adult_53_years	chr19	12800944	12800969	12800944	-	High_confidence	11	11	18	1.516936	2.599666	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	61	62	63	5.309278	4.904029	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.952381
esophagus_squamous_epithelium_female_adult_53_years	chr19	46927466	46927467	46927466	+	RAMPAGE_only	34	34	34	2.865324	3.487275	chr19	46927388	46927549	LINE|L2|L2b	-	chr19	46918675	47005077	ARHGAP35|ENST00000404338.7	+	46918675,46937263,46987988,46989543,46999303,47000330	46922356,46937408,46988066,46989675,46999409,47005077	0.970588
esophagus_squamous_epithelium_female_adult_53_years	chr14	102083177	102083256	102083177	-	RAMPAGE_only	6	6	34	2.865324	4.331977	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.970588
esophagus_squamous_epithelium_female_adult_53_years	chr5	126600248	126600249	126600248	+	High_confidence	15	15	16	1.348388	3.240224	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	0.937500
esophagus_squamous_epithelium_female_adult_53_years	chr13	99496744	99496750	99496744	-	High_confidence	4	4	11	0.927017	2.913977	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.636364
esophagus_squamous_epithelium_female_adult_53_years	chr5	160229136	160229147	160229136	+	High_confidence	51	53	176	14.832268	4.790859	chr5	160228757	160229177	LINE|L2|L2c	+	chr5	160229155	160234892	STRG.14164.1	+	160229155,160229545,160232097,160234819	160229222,160229624,160232273,160234892	0.795455
esophagus_squamous_epithelium_female_adult_53_years	chr6	36757385	36757400	36757399	-	High_confidence	3	3	9	0.758468	2.725481	chr6	36757386	36757542	SINE|MIR|MIRc	-	chr6	36740777	36757409	CPNE5|NM_001314020.1	-	36740777,36743688,36744267,36745047,36745387,36746395,36748220,36756244,36757284	36742486,36743762,36744325,36745150,36745515,36746577,36748267,36756298,36757409	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr1	206053151	206053178	206053151	+	High_confidence	5	5	14	1.179839	2.985228	chr1	206053000	206053902	LTR|ERV1|Harlequin-int	+	chr1	206052844	206062257	BX571818.1|ENST00000582596.5	+	206052844,206060400,206061344,206061661	206053265,206060449,206061397,206062257	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr19	1148382	1148454	1148418	-	RAMPAGE_only	7	7	36	3.033873	3.557296	chr19	1148343	1148479	LINE|L2|L2b	+	chr19	1107633	1132274	SBNO2|NM_001100122.1	-	1107633,1108778,1109134,1109291,1109505,1109682,1110744,1111018,1111505,1111995,1112188,1112401,1112817,1113534,1114230,1116020,1116828,1117322,1119010,1119515,1119905,1122138,1122467,1122657,1122893,1123533,1123941,1127603,1132089	1108704,1108969,1109211,1109423,1109598,1109777,1110888,1111093,1111614,1112067,1112301,1112537,1112949,1113704,1114422,1116103,1116926,1117499,1119164,1119621,1120023,1122282,1122558,1122791,1123045,1123639,1124022,1127765,1132274	0.916667
esophagus_squamous_epithelium_female_adult_53_years	chr7	134432378	134432436	134432417	-	High_confidence	8	8	37	3.118147	3.541754	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.810811
esophagus_squamous_epithelium_female_adult_53_years	chr6	140898421	140898430	140898421	-	High_confidence	7	7	14	1.179839	3.235926	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140575787	140898381	AL035446.2|ENST00000650553.1	-	140575787,140620907,140651477,140816131,140898187	140576557,140620995,140651561,140816230,140898381	0.714286
esophagus_squamous_epithelium_female_adult_53_years	chr2	182030773	182030833	182030832	+	High_confidence	11	12	51	4.297987	3.932586	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.882353
esophagus_squamous_epithelium_female_adult_53_years	chr7	2242922	2242923	2242922	+	High_confidence	24	24	24	2.022582	4.168296	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr8	8177023	8177048	8177047	+	High_confidence	9	9	37	3.118147	4.378240	chr8	8172260	8180087	LTR|ERV1|HERVE-int	+	chr8	8177874	8180426	STRG.19231.1	+	8177874	8180426	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr19	5680248	5680255	5680248	-	High_confidence	3	3	8	0.674194	2.807355	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.875000
esophagus_squamous_epithelium_female_adult_53_years	chr8	143281653	143281687	143281669	-	High_confidence	8	8	33	2.781050	4.104408	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280165	143281660	MINCR|ENST00000517411.1	-	143280165,143280881,143281481	143280515,143280997,143281660	0.545455
esophagus_squamous_epithelium_female_adult_53_years	chr3	58526799	58526816	58526799	-	High_confidence	4	4	9	0.758468	2.641604	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr12	48489292	48489316	48489315	+	High_confidence	38	40	91	7.668957	5.235243	chr12	48489156	48489319	DNA|hAT-Tip100|MamTip3	+	chr12	48489604	48496376	STRG.27776.2	+	48489604,48490811,48492946,48494797,48496180	48489864,48490836,48492995,48494979,48496376	0.890110
esophagus_squamous_epithelium_female_adult_53_years	chr14	95146606	95146615	95146606	-	RAMPAGE_only	7	7	21	1.769759	3.341446	chr14	95146085	95146813	LTR|ERV1|LTR27C	+	chr14	95086228	95141718	DICER1|ENST00000393063.5	-	95086228,95091033,95091202,95093887,95095824,95099779,95103345,95105070,95105677,95106040,95107607,95107879,95108323,95111316,95112171,95113091,95115666,95116452,95117621,95124195,95126579,95129471,95130057,95131508,95132514,95133314,95140658,95141682	95090663,95091109,95091365,95094156,95096713,95099935,95104126,95105246,95105783,95106223,95107761,95108093,95108503,95111456,95112247,95113224,95115821,95116695,95117754,95124668,95126748,95129632,95130192,95131639,95132677,95133503,95140759,95141718	0.952381
esophagus_squamous_epithelium_female_adult_53_years	chr19	35115804	35115845	35115834	+	High_confidence	12	12	51	4.297987	4.137510	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr6	30971630	30971631	30971630	+	High_confidence	27	29	32	2.696776	4.567100	chr6	30971424	30971833	LTR|ERVL|MLT2A1	+	chr6	30971667	30988637	STRG.14971.1	+	30971667,30983906,30986236,30987999	30971756,30984019,30987681,30988637	0.625000
esophagus_squamous_epithelium_female_adult_53_years	chr19	55069734	55069775	55069774	-	High_confidence	5	5	19	1.601211	3.366091	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55044323	55069546	RDH13|NM_138412.3	-	55044323,55047386,55048328,55048658,55056652,55059156,55064295,55069321	55045309,55047488,55048541,55048763,55056808,55059275,55064412,55069546	0.578947
esophagus_squamous_epithelium_female_adult_53_years	chr3	193837447	193837483	193837447	-	RAMPAGE_only	9	9	61	5.140729	5.020741	chr3	193837444	193837604	LTR|ERVL-MaLR|MLT1N2	+	chr3	193832355	193833839	STRG.10170.1	-	193832355,193833638	193833085,193833839	0.704918
esophagus_squamous_epithelium_female_adult_53_years	chr1	162868855	162868882	162868855	-	High_confidence	1	1	8	0.674194	2.521641	chr1	162868436	162870470	LINE|L1|L1PBa1	+	chr1	162851315	162868815	CCDC190|ENST00000367912.6	-	162851315,162855086,162855631,162859459,162868652	162853161,162855359,162855755,162859658,162868815	0.750000
esophagus_squamous_epithelium_female_adult_53_years	chr6	118651548	118651593	118651563	-	High_confidence	8	8	34	2.865324	4.477025	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118565092	118651543	STRG.16060.1	-	118565092,118632452,118651196	118566316,118632611,118651543	0.970588
esophagus_squamous_epithelium_female_adult_53_years	chr4	119032816	119032838	119032835	+	RAMPAGE_only	3	3	9	0.758468	2.725481	chr4	119032737	119032853	SINE|Alu|AluJr	+	chr4	118888854	119038513	SYNPO2|ENST00000429713.6	+	118888854,119023429,119026626,119029844	118889141,119023581,119027438,119038513	0.777778
esophagus_squamous_epithelium_female_adult_53_years	chr1	153967484	153967504	153967486	+	High_confidence	5	7	14	1.179839	2.661226	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.714286
esophagus_squamous_epithelium_female_adult_53_years	chr4	74114550	74114577	74114559	+	High_confidence	12	14	38	3.202421	4.491220	chr4	74114563	74114677	SINE|MIR|MIR	+	chr4	74114173	74242210	MTHFD2L|ENST00000429519.5	+	74114173,74114487,74125439,74160054,74174505,74175280,74199793,74201262,74225301,74241566	74114383,74114657,74125517,74160088,74174690,74175403,74199946,74201370,74225394,74242210	0.578947
esophagus_squamous_epithelium_female_adult_53_years	chr1	45522855	45522898	45522858	-	High_confidence	184	184	320	26.967759	6.257488	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.990625
esophagus_squamous_epithelium_female_adult_53_years	chr3	134485414	134485456	134485431	-	High_confidence	4	4	27	2.275405	3.973661	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.777778
esophagus_squamous_epithelium_female_adult_53_years	chr4	142474407	142474408	142474407	-	High_confidence	18	18	22	1.854033	3.332095	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.772727
esophagus_squamous_epithelium_female_adult_53_years	chr11	76920127	76920139	76920127	+	High_confidence	15	15	42	3.539518	4.686582	chr11	76919910	76920629	LTR|ERVL|LTR41	+	chr11	76920136	77026797	STRG.26145.2	+	76920136,76926556,76958978,76976288,76985642,76990538,76998762,77015015,77016674,77019730,77020273	76920255,76926667,76959031,76976341,76985724,76990574,76998821,77015117,77016779,77019776,77026797	0.833333
esophagus_squamous_epithelium_female_adult_53_years	chr15	80059918	80059933	80059918	+	High_confidence	36	36	75	6.320569	4.716742	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059924	80138358	STRG.32538.1	+	80059924,80073265,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80073330,80098578,80120498,80121820,80122800,80131293,80138358	0.920000
esophagus_squamous_epithelium_female_adult_53_years	chr11	60182579	60182593	60182592	-	High_confidence	5	7	12	1.011291	2.584963	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.750000
esophagus_squamous_epithelium_female_adult_53_years	chr1	43120107	43120148	43120134	+	RAMPAGE_only	14	14	81	6.826214	5.315634	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43145152	43156396	FAM183A|ENST00000410048.5	+	43145152,43150760,43152827,43156205	43145297,43150820,43152931,43156396	0.530864
esophagus_squamous_epithelium_female_adult_53_years	chr11	67848678	67848696	67848678	-	High_confidence	4	5	11	0.927017	2.550341	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67847662	67848682	STRG.25929.1	-	67847662,67848565	67847989,67848682	0.727273
esophagus_squamous_epithelium_female_adult_53_years	chr1	75375885	75375895	75375885	-	High_confidence	8	8	18	1.516936	3.616875	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75238515	75375943	STRG.1556.1	-	75238515,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75238636,75242061,75243011,75251294,75275042,75300685,75339630,75375943	0.722222
esophagus_squamous_epithelium_female_adult_53_years	chr7	133895020	133895039	133895020	+	RAMPAGE_only	2	2	11	0.927017	2.721928	chr7	133889425	133895455	LINE|L1|L1PA2	-	chr7	133930440	133997634	EXOC4|ENST00000478265.1	+	133930440,133937890,133997491	133930713,133938069,133997634	0.818182
esophagus_squamous_epithelium_female_adult_53_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	20	21	27	2.275405	3.844107	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.851852
esophagus_squamous_epithelium_female_adult_53_years	chr6	90886244	90886265	90886264	-	RAMPAGE_only	3	3	10	0.842742	2.521928	chr6	90880516	90886330	LINE|L1|L1PB1	-	chr6	90872756	90873375	STRG.15795.1	-	90872756	90873375	0.600000
esophagus_squamous_epithelium_female_adult_53_years	chr3	197546731	197546751	197546731	-	High_confidence	3	5	17	1.432662	3.500000	chr3	197546665	197546787	SINE|MIR|MIR3	+	chr3	197509782	197546718	STRG.10266.4	-	197509782,197510416,197514263,197522639,197532411,197533488,197546360	197510290,197512364,197514416,197522781,197532522,197533561,197546718	0.941176
esophagus_squamous_epithelium_female_adult_53_years	chrX	44225779	44225803	44225802	-	High_confidence	5	5	13	1.095565	2.873141	chrX	44225702	44225811	SINE|MIR|MIR3	-	chrX	44147881	44225756	EFHC2|ENST00000343571.3	-	44147881,44163921,44176291,44178366,44225684	44148896,44164027,44176384,44178564,44225756	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr20	24930628	24930660	24930639	+	High_confidence	44	47	254	21.405659	5.324587	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930657	24932882	STRG.39445.1	+	24930657,24931346	24930774,24932882	0.996063
esophagus_squamous_epithelium_female_adult_53_years	chr6	79631258	79631329	79631302	+	High_confidence	53	53	182	15.337913	5.894321	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.989011
esophagus_squamous_epithelium_female_adult_53_years	chr2	174410287	174410372	174410371	+	High_confidence	43	43	147	12.388314	4.955496	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.850340
esophagus_squamous_epithelium_female_adult_53_years	chr1	162868813	162868833	162868813	-	High_confidence	5	10	15	1.264114	3.106891	chr1	162868436	162870470	LINE|L1|L1PBa1	+	chr1	162851315	162868815	CCDC190|ENST00000367912.6	-	162851315,162855086,162855631,162859459,162868652	162853161,162855359,162855755,162859658,162868815	0.866667
esophagus_squamous_epithelium_female_adult_53_years	chr12	48489577	48489588	48489577	+	High_confidence	4	4	8	0.674194	2.521641	chr12	48489441	48489716	SINE|Alu|AluSz6	-	chr12	48489604	48496376	STRG.27776.2	+	48489604,48490811,48492946,48494797,48496180	48489864,48490836,48492995,48494979,48496376	0.625000
esophagus_squamous_epithelium_female_adult_53_years	chr7	134527596	134527597	134527596	+	High_confidence	4134	4258	4941	416.399061	7.830716	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.985833
esophagus_squamous_epithelium_female_adult_53_years	chr5	133089613	133089678	133089677	+	RAMPAGE_only	8	8	18	1.516936	3.725481	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr2	29114170	29114200	29114196	+	High_confidence	3	3	15	1.264114	3.056565	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr13	74442980	74443006	74442980	+	RAMPAGE_only	7	7	18	1.516936	3.725481	chr13	74442973	74443195	DNA|hAT-Charlie|MER30	+	chr13	74444143	74444712	STRG.29768.1	+	74444143	74444712	0.777778
esophagus_squamous_epithelium_female_adult_53_years	chr7	40815633	40815662	40815652	+	RAMPAGE_only	5	6	25	2.106856	3.813661	chr7	40810256	40816712	LINE|L1|L1PA16	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.880000
esophagus_squamous_epithelium_female_adult_53_years	chrX	5726108	5726117	5726116	-	High_confidence	15	17	30	2.528227	3.668987	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719544	5726211	STRG.41571.1	-	5719544,5725929	5719872,5726211	0.600000
esophagus_squamous_epithelium_female_adult_53_years	chr21	33931399	33931418	33931417	+	High_confidence	3	3	9	0.758468	2.500000	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.666667
esophagus_squamous_epithelium_female_adult_53_years	chr7	64999443	64999444	64999443	-	High_confidence	35	37	39	3.286696	4.474899	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64977351	64999639	STRG.17482.1	-	64977351,64981386,64981983,64989946,64999120	64979536,64981482,64982116,64993414,64999639	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chrX	11351675	11351676	11351675	-	High_confidence	8	9	10	0.842742	2.846439	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11182077	11351650	STRG.41652.2	-	11182077,11186235,11188727,11196924,11254547,11351385	11182118,11186431,11188984,11196996,11254707,11351650	0.600000
esophagus_squamous_epithelium_female_adult_53_years	chr4	139647357	139647363	139647357	-	High_confidence	46	46	71	5.983472	5.241584	chr4	139647213	139647611	LINE|L2|L2b	+	chr4	139618406	139647345	STRG.11834.2	-	139618406,139628541,139647248	139619101,139628675,139647345	0.591549
esophagus_squamous_epithelium_female_adult_53_years	chr8	99892056	99892057	99892056	-	RAMPAGE_only	183	183	225	18.961706	4.700782	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.995556
esophagus_squamous_epithelium_female_adult_53_years	chr11	12989541	12989544	12989543	-	High_confidence	59	110	148	12.472589	5.988589	chr11	12989406	12989730	LTR|ERVL-MaLR|THE1D	-	chr11	12961841	12989547	LINC00958|ENST00000527945.2	-	12961841,12965107,12989455	12962763,12965214,12989547	0.513514
esophagus_squamous_epithelium_female_adult_53_years	chr19	48868595	48868631	48868613	-	High_confidence	70	94	435	36.659298	6.798727	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48859508	48868608	STRG.38653.1	-	48859508,48860349,48861400,48861619,48865502,48867536,48868082	48859684,48860459,48861501,48861692,48865610,48867626,48868608	0.993103
esophagus_squamous_epithelium_female_adult_53_years	chr17	59619888	59619923	59619894	+	High_confidence	490	599	1947	164.081961	5.309344	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.963534
esophagus_squamous_epithelium_female_adult_53_years	chr3	14017455	14017488	14017486	+	High_confidence	24	44	108	9.101619	6.048762	chr3	14012549	14017955	LINE|L1|L1PB1	-	chr3	14017552	14065984	TPRXL|ENST00000429201.6	+	14017552,14057137,14063378,14064019	14017665,14057184,14063508,14065984	0.518519
esophagus_squamous_epithelium_female_adult_53_years	chr3	24019018	24019044	24019043	+	RAMPAGE_only	5	6	15	1.264114	3.235926	chr3	24018754	24020004	LTR|ERV1|LTR2752	-	chr3	24151323	24189956	LOC101927854|NR_121667.1	+	24151323,24173783,24177949,24189574	24151400,24173904,24178012,24189956	0.600000
esophagus_squamous_epithelium_female_adult_53_years	chr6	40867661	40867730	40867661	-	High_confidence	34	35	101	8.511699	4.917352	chr6	40861829	40868245	LTR|ERV1|HERVH-int	-	chr6	40857746	40867714	STRG.15225.1	-	40857746,40867389	40858753,40867714	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr5	117454948	117454966	117454949	+	High_confidence	23	32	69	5.814923	5.041148	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.971014
esophagus_squamous_epithelium_female_adult_53_years	chr2	43137638	43137661	43137659	-	RAMPAGE_only	27	35	67	5.646375	4.604695	chr2	43137289	43137984	LINE|L2|L2a	+	chr2	43097745	43102691	LINC02580|ENST00000434020.1	-	43097745,43102034	43098040,43102691	0.895522
esophagus_squamous_epithelium_female_adult_53_years	chr1	75376223	75376258	75376223	-	High_confidence	9	9	26	2.191130	3.503539	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75238515	75375943	STRG.1556.1	-	75238515,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75238636,75242061,75243011,75251294,75275042,75300685,75339630,75375943	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr8	28245091	28245103	28245102	-	RAMPAGE_only	26	29	75	6.320569	4.476692	chr8	28244916	28245216	LTR|ERVL-MaLR|MSTA	-	chr8	28177586	28178032	STRG.19536.1	-	28177586	28178032	0.680000
esophagus_squamous_epithelium_female_adult_53_years	chr13	29647604	29647657	29647624	+	High_confidence	16	16	40	3.370970	4.503056	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647662	29655378	STRG.29277.1	+	29647662,29655069	29647724,29655378	0.900000
esophagus_squamous_epithelium_female_adult_53_years	chr12	13376665	13376666	13376665	-	High_confidence	12	12	18	1.516936	3.683542	chr12	13376413	13376888	LTR|ERVL|MLT2B1	-	chr12	13374439	13376684	STRG.27329.2	-	13374439,13376223,13376513	13375064,13376425,13376684	0.611111
esophagus_squamous_epithelium_female_adult_53_years	chr4	79206694	79206695	79206694	+	RAMPAGE_only	24	24	31	2.612502	4.021268	chr4	79206338	79206927	LTR|ERV1|LTR10C	+	chr4	79197540	79308655	LINC01088|ENST00000512130.5	+	79197540,79306690,79308272	79197644,79306728,79308655	0.870968
esophagus_squamous_epithelium_female_adult_53_years	chr3	73808585	73808586	73808585	+	High_confidence	24	24	26	2.191130	3.855389	chr3	73808390	73808744	LTR|ERVL-MaLR|THE1A	+	chr3	73808600	73902866	LINC02005|ENST00000498832.1	+	73808600,73869775,73878805,73902530	73808668,73869961,73878997,73902866	0.576923
esophagus_squamous_epithelium_female_adult_53_years	chr22	41604069	41604105	41604069	-	RAMPAGE_only	2	2	11	0.927017	2.732159	chr22	41603905	41604023	LINE|L2|L2c	-	chr22	41600892	41602523	DESI1|ENST00000468151.1	-	41600892,41602423	41601190,41602523	0.909091
esophagus_squamous_epithelium_female_adult_53_years	chr6	31587195	31587221	31587201	+	High_confidence	9	9	23	1.938308	3.236857	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.913043
esophagus_squamous_epithelium_female_adult_53_years	chr22	50541357	50541389	50541388	+	RAMPAGE_only	3	3	8	0.674194	2.750000	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr17	32684271	32684272	32684271	-	RAMPAGE_only	40	40	43	3.623793	4.106198	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32638774	32659451	MYO1D|ENST00000581059.5	-	32638774,32653842,32654476,32659114,32659424	32638835,32653947,32654621,32659338,32659451	0.534884
esophagus_squamous_epithelium_female_adult_53_years	chr1	212232522	212232523	212232522	-	RAMPAGE_only	26	33	33	2.781050	4.284684	chr1	212232282	212232732	LTR|ERVL|MLT2A2	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	0.939394
esophagus_squamous_epithelium_female_adult_53_years	chr19	55280196	55280219	55280217	-	High_confidence	4	7	17	1.432662	2.608459	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.941176
esophagus_squamous_epithelium_female_adult_53_years	chr8	9188188	9188211	9188188	+	High_confidence	3	3	27	2.275405	3.912114	chr8	9188163	9188460	LINE|L2|L2b	-	chr8	9188958	9203126	AC022784.1|ENST00000649571.1	+	9188958,9189347,9198923,9202498	9189046,9189586,9198991,9203126	0.962963
esophagus_squamous_epithelium_female_adult_53_years	chr17	11972082	11972083	11972082	+	High_confidence	247	253	321	27.052034	5.639496	chr17	11971755	11972189	LTR|ERV1|LTR7Y	+	chr17	11971979	11976829	STRG.34730.1	+	11971979,11976500	11972335,11976829	0.906542
esophagus_squamous_epithelium_female_adult_53_years	chr8	127218869	127218931	127218878	-	High_confidence	20	20	80	6.741940	5.418943	chr8	127218788	127218864	SINE|MIR|MIR	-	chr8	127185606	127218925	CASC19|ENST00000641523.1	-	127185606,127187784,127188044,127202041,127203162,127208605,127208856,127218809	127185770,127187884,127188115,127202152,127203220,127208682,127209717,127218925	0.525000
esophagus_squamous_epithelium_female_adult_53_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	6	6	6	0.505645	2.584963	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr19	41545191	41545192	41545191	+	RAMPAGE_only	33	33	33	2.781050	3.995025	chr19	41544577	41545607	LTR|ERVK|LTR5A	+	chr19	41549517	41586844	CEACAM21|NM_001288773.2	+	41549517,41564681,41577199,41579269,41584346,41585442,41585839,41586463	41549552,41565056,41577559,41579628,41584443,41585495,41585871,41586844	0.575758
esophagus_squamous_epithelium_female_adult_53_years	chr22	29748765	29748766	29748765	-	RAMPAGE_only	11	11	11	0.927017	2.913977	chr22	29748740	29748819	DNA|hAT-Charlie|MER5B	+	chr22	29730955	29766961	ZMAT5|ENST00000344318.3	-	29730955,29738329,29740649,29742417,29748417,29766871	29731354,29738441,29740730,29742480,29748571,29766961	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr14	22566412	22566445	22566426	-	RAMPAGE_only	7	7	38	3.202421	2.930973	chr14	22566338	22566626	SINE|Alu|AluSp	-	chr14	22564906	22575089	DAD1|ENST00000489532.6	-	22564906,22567087,22575058	22565137,22567164,22575089	0.921053
esophagus_squamous_epithelium_female_adult_53_years	chr2	233691673	233691710	233691709	+	High_confidence	59	65	227	19.130254	6.585880	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233691709	233772341	UGT1A6|ENST00000446481.6	+	233691709,233693798,233767033,233767848,233768219,233769530,233772261	233691820,233693865,233767165,233767936,233768439,233769664,233772341	0.585903
esophagus_squamous_epithelium_female_adult_53_years	chr1	154975508	154975519	154975518	+	High_confidence	6	6	12	1.011291	3.022055	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.916667
esophagus_squamous_epithelium_female_adult_53_years	chr11	123060135	123060256	123060255	-	High_confidence	13	15	139	11.714121	5.197333	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.553957
esophagus_squamous_epithelium_female_adult_53_years	chr8	53523792	53523902	53523862	-	High_confidence	6	6	27	2.275405	3.993270	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.851852
esophagus_squamous_epithelium_female_adult_53_years	chr21	17070943	17070967	17070943	-	RAMPAGE_only	2	2	10	0.842742	2.721928	chr21	17070789	17071170	LTR|ERVL-MaLR|THE1C	-	chr21	16973220	16973768	STRG.40167.1	-	16973220	16973768	0.800000
esophagus_squamous_epithelium_female_adult_53_years	chr22	42721166	42721167	42721166	-	High_confidence	10	10	10	0.842742	2.646439	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr12	48489743	48489780	48489779	+	High_confidence	10	11	57	4.803632	4.897193	chr12	48489725	48490021	SINE|Alu|AluSx	-	chr12	48489604	48496376	STRG.27776.2	+	48489604,48490811,48492946,48494797,48496180	48489864,48490836,48492995,48494979,48496376	0.807018
esophagus_squamous_epithelium_female_adult_53_years	chr11	76920217	76920226	76920217	+	High_confidence	5	5	11	0.927017	3.095795	chr11	76919910	76920629	LTR|ERVL|LTR41	+	chr11	76920136	77026797	STRG.26145.2	+	76920136,76926556,76958978,76976288,76985642,76990538,76998762,77015015,77016674,77019730,77020273	76920255,76926667,76959031,76976341,76985724,76990574,76998821,77015117,77016779,77019776,77026797	0.909091
esophagus_squamous_epithelium_female_adult_53_years	chr6	28354137	28354144	28354137	-	High_confidence	38	38	68	5.730649	4.714666	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329373	28354186	ZSCAN31|ENST00000446222.5	-	28329373,28336789,28353861,28354130	28329778,28336943,28353952,28354186	0.661765
esophagus_squamous_epithelium_female_adult_53_years	chr3	8611922	8611970	8611957	-	High_confidence	6	6	27	2.275405	4.132944	chr3	8611524	8617535	LINE|L1|L1PA3	+	chr3	8573241	8611923	STRG.7679.1	-	8573241,8603243,8611122,8611857	8573874,8603379,8611359,8611923	0.925926
esophagus_squamous_epithelium_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	114	115	115	9.691539	4.498583	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.947826
esophagus_squamous_epithelium_female_adult_53_years	chr1	209567775	209567778	209567777	-	High_confidence	7	16	18	1.516936	3.616875	chr1	209567578	209567919	LTR|ERVL-MaLR|MLT1I	-	chr1	209525198	209567812	STRG.3547.1	-	209525198,209526274,209540697,209541307,209566911,209567535	209525393,209526559,209540788,209541429,209566987,209567812	0.500000
esophagus_squamous_epithelium_female_adult_53_years	chr21	29077458	29077487	29077486	+	High_confidence	11	13	24	2.022582	3.795089	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.625000
esophagus_squamous_epithelium_female_adult_53_years	chr5	148094177	148094179	148094177	+	RAMPAGE_only	12	18	26	2.191130	3.753270	chr5	148094012	148094305	SINE|Alu|AluJo	+	chr5	148090927	148101428	SPINK5|ENST00000476608.1	+	148090927,148091164,148094353,148095817,148097866,148099233,148100453,148101354	148091045,148091228,148094481,148095905,148097994,148099315,148100581,148101428	0.961538
esophagus_squamous_epithelium_female_adult_53_years	chr1	209429200	209429264	209429238	+	High_confidence	52	62	299	25.198000	5.549596	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.929766
esophagus_squamous_epithelium_female_adult_53_years	chr1	116390289	116390372	116390289	+	RAMPAGE_only	9	9	54	4.550809	3.708877	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr10	102449836	102449845	102449836	+	High_confidence	7	7	25	2.106856	3.573935	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.880000
esophagus_squamous_epithelium_female_adult_53_years	chr9	20658312	20658349	20658348	+	High_confidence	11	18	62	5.225003	4.893657	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658351	20821063	STRG.21254.1	+	20658351,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821063	0.693548
esophagus_squamous_epithelium_female_adult_53_years	chr22	50756908	50756924	50756908	+	High_confidence	2	2	8	0.674194	2.500000	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756929	50783207	STRG.41507.1	+	50756929,50783119	50757326,50783207	0.625000
esophagus_squamous_epithelium_female_adult_53_years	chr1	222064772	222064773	222064772	-	High_confidence	48	50	50	4.213712	4.121115	chr1	222064600	222064953	LTR|ERVL-MaLR|THE1B	-	chr1	222041704	222064763	LINC01705|ENST00000438158.1	-	222041704,222058413,222064684	222041922,222058678,222064763	0.780000
esophagus_squamous_epithelium_female_adult_53_years	chr2	20217669	20217674	20217669	-	RAMPAGE_only	7	7	14	1.179839	2.699514	chr2	20217521	20217659	SINE|MIR|MIRc	-	chr2	20204001	20223388	SDC1|ENST00000482879.5	-	20204001,20205342,20223202	20204291,20205424,20223388	0.500000
esophagus_squamous_epithelium_female_adult_53_years	chr6	106970608	106970877	106970656	-	RAMPAGE_only	19	21	306	25.787920	6.001345	chr6	106970529	106970829	SINE|Alu|AluSx1	+	chr6	106969830	106974039	CD24|NM_001291739.1	-	106969830,106973669	106971834,106974039	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr10	65570509	65570518	65570515	+	High_confidence	3	3	12	1.011291	2.663533	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.666667
esophagus_squamous_epithelium_female_adult_53_years	chr7	154928503	154928504	154928503	+	High_confidence	18	18	26	2.191130	3.979098	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	1.000000
esophagus_squamous_epithelium_female_adult_53_years	chr9	116838453	116838467	116838466	+	High_confidence	10	10	28	2.359679	3.726474	chr9	116838426	116838730	SINE|Alu|AluSq2	-	chr9	116838280	116848170	STRG.22593.5	+	116838280,116847833	116839021,116848170	0.678571
esophagus_squamous_epithelium_female_adult_53_years	chr16	30445873	30445877	30445876	-	High_confidence	21	36	53	4.466535	4.887658	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.981132
esophagus_squamous_epithelium_female_adult_53_years	chr2	171433322	171433378	171433377	-	High_confidence	12	12	20	1.685485	3.642150	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171339330	171433532	STRG.6420.12	-	171339330,171360421,171414602,171433025	171339554,171360513,171414726,171433532	0.850000
esophagus_squamous_epithelium_female_adult_53_years	chr18	46868643	46868644	46868643	+	High_confidence	54	55	57	4.803632	4.325679	chr18	46868192	46868774	LTR|ERV1|LTR10B1	+	chr18	46868655	46875208	STRG.36837.1	+	46868655,46868811,46874769	46868692,46868990,46875208	0.912281
esophagus_squamous_epithelium_male_adult_37_years	chr11	65442584	65442585	65442584	+	RAMPAGE_only	11	11	17	0.805116	3.875000	chr11	65442603	65442894	SINE|Alu|AluSx4	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.941176
esophagus_squamous_epithelium_male_adult_37_years	chr1	168137436	168137470	168137458	-	High_confidence	8	8	23	1.089275	3.594466	chr1	168137391	168137473	LINE|L2|L2b	-	chr1	168085277	168137573	STRG.5938.2	-	168085277,168087584,168090563,168096507,168104476,168114455,168134905,168137164	168085796,168087704,168090668,168097232,168104894,168114549,168135036,168137573	0.869565
esophagus_squamous_epithelium_male_adult_37_years	chr14	32402135	32402136	32402135	+	RAMPAGE_only	23	23	23	1.089275	3.427071	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32433163	32439032	AKAP6|ENST00000554449.1	+	32433163,32438673	32433817,32439032	0.739130
esophagus_squamous_epithelium_male_adult_37_years	chr22	50785222	50785272	50785222	+	RAMPAGE_only	4	4	20	0.947196	3.884184	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	14	14	14	0.663037	2.807355	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr21	13889371	13889372	13889371	-	RAMPAGE_only	4	4	6	0.284159	2.584963	chr21	13888588	13890121	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13972129	STRG.89033.1	-	13843069,13845004,13846012,13846758,13879023,13887522,13900823,13907889,13909573,13910495,13911717,13915186,13916746,13917554,13925163,13932227,13939245,13940814,13945038,13951066,13951231,13954065,13969972	13844135,13845274,13846141,13859703,13879217,13891064,13907736,13908028,13909693,13910549,13911763,13915409,13916958,13917836,13925293,13938067,13939428,13940978,13945109,13951139,13951260,13967436,13972129	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr8	73964627	73964628	73964627	-	RAMPAGE_only	4	4	6	0.284159	2.584963	chr8	73964514	73964649	SINE|Alu|FLAM_C	+	chr8	73946263	73970637	ELOC|ENST00000519487.5	-	73946263,73955910,73959764,73970578	73946820,73956054,73959818,73970637	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr16	50396877	50396879	50396877	-	RAMPAGE_only	13	19	27	1.278714	3.958229	chr16	50396540	50397080	LTR|ERVL|MLT2A2	-	chr16	50390915	50395133	LINC02178|ENST00000566876.1	-	50390915,50394934	50391141,50395133	0.629630
esophagus_squamous_epithelium_male_adult_37_years	chr11	76963478	76963479	76963478	-	RAMPAGE_only	6	6	9	0.426238	2.725481	chr11	76962900	76963486	LTR|ERV1|MER61F	+	chr11	76955416	76978619	AP002498.1|ENST00000530190.1	-	76955416,76958833,76978400	76955585,76959013,76978619	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr5	139364730	139364741	139364730	+	RAMPAGE_only	2	2	6	0.284159	2.584963	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.833333
esophagus_squamous_epithelium_male_adult_37_years	chr17	47067498	47067518	47067498	-	High_confidence	165	181	624	29.552511	5.880823	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.943910
esophagus_squamous_epithelium_male_adult_37_years	chr17	41503978	41504126	41504125	-	RAMPAGE_only	14	15	122	5.777895	5.529412	chr17	41504018	41504184	SINE|MIR|MIR3	+	chr17	41500980	41505597	KRT13|ENST00000246635.7	-	41500980,41501718,41502373,41502686,41502936,41503286,41503642,41505055	41501362,41501744,41502594,41502812,41503098,41503443,41503725,41505597	0.557377
esophagus_squamous_epithelium_male_adult_37_years	chr3	134485443	134485490	134485443	-	High_confidence	8	8	52	2.462709	5.101456	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.865385
esophagus_squamous_epithelium_male_adult_37_years	chr18	7946878	7946888	7946878	+	High_confidence	11	11	28	1.326074	3.753434	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.928571
esophagus_squamous_epithelium_male_adult_37_years	chr19	35115816	35115842	35115834	+	High_confidence	13	13	33	1.562873	4.437500	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.757576
esophagus_squamous_epithelium_male_adult_37_years	chr1	47004182	47004218	47004217	+	High_confidence	5	5	21	0.994556	4.037401	chr1	47003946	47004346	LTR|ERV1|MER51B	+	chr1	47004239	47050754	CYP4X1|NM_001320290.1	+	47004239,47029989,47031435,47033240,47035805,47036016,47038659,47039341,47046466,47048564,47049421,47049999	47004369,47030131,47031480,47033368,47035933,47036171,47038766,47039532,47046600,47048629,47049504,47050754	0.809524
esophagus_squamous_epithelium_male_adult_37_years	chr21	13846042	13846062	13846057	-	RAMPAGE_only	4	4	15	0.710397	3.373557	chr21	13845763	13846089	LTR|ERVL|LTR16C	-	chr21	13843132	13848364	CYP4F29P|ENST00000428301.1	-	13843132,13844021,13845004,13846012,13846758,13848089	13843432,13844135,13845274,13846141,13846949,13848364	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr2	176495470	176495491	176495470	+	RAMPAGE_only	365	386	760	35.993443	7.067822	chr2	176495430	176495588	SINE|Alu|AluJo	-	chr2	176465923	176591160	STRG.14391.1	+	176465923,176495472,176497713,176586032,176587918	176466028,176495570,176497795,176586092,176591160	0.743421
esophagus_squamous_epithelium_male_adult_37_years	chr3	161282535	161282580	161282535	-	High_confidence	29	29	134	6.346212	5.519913	chr3	161282195	161282741	LTR|ERVL|MLT2A2	-	chr3	161267579	161282606	STRG.22554.1	-	161267579,161270388	161270342,161282606	0.970149
esophagus_squamous_epithelium_male_adult_37_years	chr21	46225967	46225986	46225981	-	RAMPAGE_only	3	3	10	0.473598	2.725481	chr21	46225020	46226027	LTR|ERVK|LTR13	+	chr21	46190782	46228762	STRG.90237.6	-	46190782,46191880,46193507,46195675,46196201,46205835,46206671,46207427,46208250,46209553,46210687,46213024,46213737,46215179,46215684,46216388,46219475,46221853,46222662,46228433,46228731	46191235,46193265,46194661,46195756,46196267,46205941,46206768,46207577,46208301,46209625,46210744,46213052,46213835,46215298,46215793,46216524,46219572,46221975,46227690,46228599,46228762	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr5	133089672	133089694	133089677	+	RAMPAGE_only	3	3	9	0.426238	3.169925	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr8	8177044	8177053	8177047	+	RAMPAGE_only	9	9	19	0.899836	3.947703	chr8	8172260	8180087	LTR|ERV1|HERVE-int	+	chr8	8065645	8180527	AC105233.5|ENST00000641338.1	+	8065645,8086006,8154394,8177754	8065816,8086223,8154530,8180527	0.684211
esophagus_squamous_epithelium_male_adult_37_years	chr6	7426874	7426875	7426874	+	High_confidence	8	8	10	0.473598	3.121928	chr6	7425609	7427287	LTR|ERV1|LTR12C	+	chr6	7426884	7427310	STRG.34443.1	+	7426884	7427310	0.800000
esophagus_squamous_epithelium_male_adult_37_years	chr11	112150608	112150633	112150608	-	High_confidence	9	9	17	0.805116	3.852169	chr11	112150354	112150650	LINE|L2|L2c	+	chr11	112143256	112151073	IL18|ENST00000525547.5	-	112143256,112148602,112150071	112143817,112148736,112151073	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr11	11118741	11118742	11118741	+	High_confidence	6	7	9	0.426238	2.750000	chr11	11118609	11118909	LTR|ERVL-MaLR|MLT1L	-	chr11	11117853	11183611	AC111188.1|ENST00000525758.1	+	11117853,11120523,11167822,11169080,11179906,11182326,11183362	11117949,11120535,11168157,11169198,11180004,11183251,11183611	0.555556
esophagus_squamous_epithelium_male_adult_37_years	chr20	18794063	18794086	18794085	+	High_confidence	38	39	111	5.256937	4.281485	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.981982
esophagus_squamous_epithelium_male_adult_37_years	chr9	92536651	92536675	92536651	-	High_confidence	6	7	15	0.710397	3.506891	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.866667
esophagus_squamous_epithelium_male_adult_37_years	chr5	148094158	148094178	148094177	+	RAMPAGE_only	10	12	19	0.899836	4.037401	chr5	148094012	148094305	SINE|Alu|AluJo	+	chr5	148090927	148101428	SPINK5|ENST00000476608.1	+	148090927,148091164,148094353,148095817,148097866,148099233,148100453,148101354	148091045,148091228,148094481,148095905,148097994,148099315,148100581,148101428	0.789474
esophagus_squamous_epithelium_male_adult_37_years	chr6	71291213	71291218	71291213	+	High_confidence	4	4	8	0.378878	2.807355	chr6	71290785	71291650	LINE|L2|L2	-	chr6	71291361	71293612	OGFRL1|ENST00000467503.1	+	71291361,71293292,71293532	71292020,71293379,71293612	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	52	52	52	2.462709	3.885625	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr1	17238484	17238505	17238504	+	RAMPAGE_only	5	5	12	0.568318	3.251629	chr1	17238342	17238535	LINE|L2|L2b	-	chr1	17239631	17246004	PADI1|ENST00000460293.1	+	17239631,17244009	17240760,17246004	0.916667
esophagus_squamous_epithelium_male_adult_37_years	chr19	5850837	5850886	5850842	-	High_confidence	2	3	19	0.899836	3.947703	chr19	5850730	5850957	SINE|Alu|AluJo	+	chr19	5844518	5851449	FUT3|ENST00000589714.1	-	5844518,5846425,5851389	5844851,5846599,5851449	0.684211
esophagus_squamous_epithelium_male_adult_37_years	chr12	15956719	15956720	15956719	+	High_confidence	9	9	10	0.473598	2.947703	chr12	15956683	15956730	DNA|TcMar-Mariner|MADE1	-	chr12	15956587	16037280	DERA|ENST00000526530.1	+	15956587,15956935,15958187,15959828,15962812,15982307,16032541,16036231,16036689	15956746,15957033,15958335,15959924,15962947,15982436,16032654,16036381,16037280	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr3	14047196	14047210	14047205	-	High_confidence	44	51	84	3.978223	5.102239	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14037448	14047189	STRG.17385.1	-	14037448,14046812	14041628,14047189	0.809524
esophagus_squamous_epithelium_male_adult_37_years	chr14	44912624	44912629	44912628	-	High_confidence	4	4	8	0.378878	2.807355	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chrX	5726193	5726194	5726193	-	High_confidence	18	18	19	0.899836	3.461320	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5718745	5726310	STRG.91976.1	-	5718745,5725929	5719872,5726310	0.842105
esophagus_squamous_epithelium_male_adult_37_years	chr12	91179456	91179463	91179462	-	High_confidence	25847	26584	37533	1777.555124	7.708304	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.904990
esophagus_squamous_epithelium_male_adult_37_years	chr8	27977120	27977126	27977125	-	RAMPAGE_only	19	21	30	1.420794	4.168326	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.766667
esophagus_squamous_epithelium_male_adult_37_years	chr9	73158094	73158142	73158141	+	High_confidence	4	6	15	0.710397	3.456565	chr9	73158106	73158195	LINE|L2|L2c	+	chr9	73157653	73170393	ANXA1|ENST00000376911.1	+	73157653,73158694,73159328,73160262,73160802,73162781,73163475,73165115,73166096,73167496,73169031,73170050	73158601,73158803,73159423,73160376,73160893,73162861,73163532,73165209,73166192,73167555,73169154,73170393	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr14	102235458	102235472	102235458	-	High_confidence	4	4	11	0.520958	2.521928	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.909091
esophagus_squamous_epithelium_male_adult_37_years	chr17	49646397	49646409	49646400	-	High_confidence	5	5	16	0.757757	3.006239	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.812500
esophagus_squamous_epithelium_male_adult_37_years	chr1	150729767	150729791	150729767	-	High_confidence	2	3	8	0.378878	2.521641	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150646224	150729890	STRG.5121.1	-	150646224,150661813,150663631,150694655,150696991,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150714614,150717137,150719472,150729141,150729573	150648748,150661928,150663763,150694850,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150714678,150717282,150719538,150729225,150729890	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr11	65434041	65434178	65434041	+	RAMPAGE_only	20	20	166	7.861726	5.127442	chr11	65433870	65434194	LINE|L1|L1ME3F	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr2	174410066	174410108	174410107	+	High_confidence	5	5	13	0.615677	3.238901	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410081	174427895	SCRN3|ENST00000549848.5	+	174410081,174422884,174424474,174427712	174410503,174423047,174424649,174427895	0.923077
esophagus_squamous_epithelium_male_adult_37_years	chr2	130912841	130912846	130912841	+	RAMPAGE_only	4	4	10	0.473598	3.169925	chr2	130912814	130913132	DNA|TcMar-Tigger|MER44A	+	chr2	130837454	130947230	ARHGEF4|ENST00000526381.2	+	130837454,130913985,130930951,130946508	130837701,130917498,130931257,130947230	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr22	30425556	30425561	30425556	+	High_confidence	3	3	6	0.284159	2.584963	chr22	30425519	30425631	SINE|MIR|MIRb	-	chr22	30425529	30429053	MTFP1|ENST00000266263.9	+	30425529,30426716,30427170,30428461	30425946,30426844,30427403,30429053	0.833333
esophagus_squamous_epithelium_male_adult_37_years	chr11	108224068	108224075	108224074	+	High_confidence	4	4	9	0.426238	2.750000	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr11	18706988	18707002	18707001	-	RAMPAGE_only	4	4	9	0.426238	2.750000	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18704304	18726180	IGSF22|ENST00000513874.5	-	18704304,18705816,18706913,18707803,18708206,18709386,18710326,18710654,18712081,18713851,18714276,18714499,18715431,18716727,18717930,18718614,18719715,18720063,18720185,18721534,18721909,18724127,18726073	18704538,18706146,18707213,18707996,18708295,18709683,18710455,18710828,18712384,18714148,18714418,18714624,18715716,18717000,18718093,18718728,18719893,18720103,18720285,18721671,18722041,18724269,18726180	0.555556
esophagus_squamous_epithelium_male_adult_37_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	25	25	25	1.183995	3.589275	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	9	9	14	0.663037	3.180833	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.642857
esophagus_squamous_epithelium_male_adult_37_years	chr12	643625	643636	643635	-	High_confidence	219	223	637	30.168188	5.629627	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.959184
esophagus_squamous_epithelium_male_adult_37_years	chr5	96171869	96171889	96171888	-	RAMPAGE_only	3	3	10	0.473598	2.947703	chr5	96169217	96171958	LTR|ERV1|HERVH-int	-	chr5	96165610	96166160	STRG.31344.1	-	96165610	96166160	0.700000
esophagus_squamous_epithelium_male_adult_37_years	chr21	13860575	13860632	13860586	-	RAMPAGE_only	3	3	16	0.757757	3.280639	chr21	13859698	13861012	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13885087	STRG.89033.17	-	13843069,13845004,13846012,13846758,13865636	13844135,13845274,13846141,13865504,13885087	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr17	60887052	60887083	60887052	+	High_confidence	3	3	17	0.805116	3.969816	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr12	10553364	10553365	10553364	+	High_confidence	82	86	93	4.404461	5.809328	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.548387
esophagus_squamous_epithelium_male_adult_37_years	chr19	9140390	9140428	9140427	+	High_confidence	38	39	163	7.719646	6.206039	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.644172
esophagus_squamous_epithelium_male_adult_37_years	chr1	39026163	39026178	39026163	+	High_confidence	1	1	7	0.331519	2.584963	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr1	17238421	17238440	17238428	+	RAMPAGE_only	2	2	9	0.426238	2.750000	chr1	17238342	17238535	LINE|L2|L2b	-	chr1	17239631	17246004	PADI1|ENST00000460293.1	+	17239631,17244009	17240760,17246004	0.555556
esophagus_squamous_epithelium_male_adult_37_years	chr1	168251204	168251210	168251204	+	RAMPAGE_only	3	6	17	0.805116	3.875000	chr1	168251021	168251335	SINE|Alu|AluSz6	+	chr1	168226007	168253025	SFT2D2|ENST00000271375.6	+	168226007,168231513,168231833,168235100,168236588,168236711,168239130,168242500	168226142,168231600,168231919,168235182,168236624,168236770,168239160,168253025	0.941176
esophagus_squamous_epithelium_male_adult_37_years	chr2	171433137	171433148	171433147	-	High_confidence	17	17	30	1.420794	4.215061	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr12	13376643	13376666	13376665	-	High_confidence	37	40	58	2.746868	5.316109	chr12	13376413	13376888	LTR|ERVL|MLT2B1	-	chr12	13374797	13376675	LINC01559|ENST00000539026.1	-	13374797,13376223,13376513	13375006,13376425,13376675	0.551724
esophagus_squamous_epithelium_male_adult_37_years	chr18	14256854	14256881	14256880	+	High_confidence	3	3	7	0.331519	2.584963	chr18	14256874	14257025	LTR|ERVL-MaLR|THE1D-int	-	chr18	14256245	14259282	STRG.81899.1	+	14256245	14259282	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr5	154038408	154038409	154038408	-	High_confidence	15	15	21	0.994556	4.037401	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.761905
esophagus_squamous_epithelium_male_adult_37_years	chr1	12572735	12572809	12572746	-	RAMPAGE_only	4	4	26	1.231355	4.243856	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.961538
esophagus_squamous_epithelium_male_adult_37_years	chrY	12686512	12686531	12686526	+	RAMPAGE_only	2	2	9	0.426238	2.750000	chrY	12685409	12686624	LTR|ERV1|MER4-int	+	chrY	12701230	12860839	USP9Y|ENST00000338981.7	+	12701230,12708633,12709387,12720588,12722107,12725112,12726574,12735611,12735997,12736410,12738156,12739524,12757191,12758505,12760483,12771067,12773582,12775470,12776648,12778018,12778605,12779525,12786202,12786521,12790406,12791498,12793031,12810178,12810671,12811634,12812829,12816123,12818419,12833687,12837910,12839863,12841009,12842239,12843063,12846332,12846932,12847238,12856339,12856632,12857565,12859278	12702055,12708693,12709543,12720737,12722187,12725225,12726793,12735727,12736249,12736549,12738309,12739629,12757398,12758642,12760617,12771155,12773925,12775566,12776860,12778259,12778755,12779646,12786333,12786800,12790532,12791624,12793201,12810287,12810818,12811781,12813052,12816344,12818610,12833861,12838052,12840614,12841133,12842465,12843193,12846518,12847153,12847327,12856496,12856845,12857661,12860839	0.777778
esophagus_squamous_epithelium_male_adult_37_years	chr21	29077464	29077501	29077486	+	High_confidence	22	25	72	3.409905	5.395280	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077474	29091576	MAP3K7CL|ENST00000419845.5	+	29077474,29080551,29085812,29091500	29077713,29080708,29085917,29091576	0.625000
esophagus_squamous_epithelium_male_adult_37_years	chr21	13883240	13883302	13883301	-	RAMPAGE_only	6	6	44	2.083831	4.536389	chr21	13881831	13883382	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13885087	STRG.89033.17	-	13843069,13845004,13846012,13846758,13865636	13844135,13845274,13846141,13865504,13885087	0.977273
esophagus_squamous_epithelium_male_adult_37_years	chr5	170267248	170267278	170267248	-	High_confidence	2	2	9	0.426238	2.947703	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr3	57267772	57267782	57267781	+	RAMPAGE_only	5	6	14	0.663037	3.521641	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.928571
esophagus_squamous_epithelium_male_adult_37_years	chr15	74350828	74350851	74350828	+	High_confidence	3	4	9	0.426238	2.750000	chr15	74350554	74350908	LTR|ERV1|MER51B	+	chr15	74350767	74361903	PPIAP46|ENST00000564109.1	+	74350767,74354525,74356282,74361513	74350939,74354685,74356475,74361903	0.777778
esophagus_squamous_epithelium_male_adult_37_years	chr18	49872174	49872175	49872174	-	RAMPAGE_only	5	5	8	0.378878	2.500000	chr18	49871998	49872125	SINE|MIR|MIR3	-	chr18	49863261	49876283	MYO5B|ENST00000587895.1	-	49863261,49864140,49872166,49875686,49876235	49863327,49864380,49872232,49875827,49876283	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr7	134527596	134527597	134527596	+	High_confidence	1170	1192	1504	71.229129	7.603267	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.982048
esophagus_squamous_epithelium_male_adult_37_years	chr9	20658338	20658349	20658338	+	High_confidence	10	11	39	1.847032	4.499598	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658341	20770112	STRG.49501.5	+	20658341,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.923077
esophagus_squamous_epithelium_male_adult_37_years	chr2	45192665	45192666	45192665	-	RAMPAGE_only	9	10	10	0.473598	2.725481	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr5	160412454	160412465	160412454	-	RAMPAGE_only	2	3	9	0.426238	3.000000	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160406348	160408421	SLU7|ENST00000520841.1	-	160406348,160407475,160407745,160407970,160408328	160406629,160407615,160407813,160408068,160408421	0.555556
esophagus_squamous_epithelium_male_adult_37_years	chr1	23417904	23417918	23417904	-	RAMPAGE_only	3	3	7	0.331519	2.521641	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23408559	23419236	TCEA3|ENST00000374602.2	-	23408559,23417248,23417903,23419076	23408726,23417390,23418009,23419236	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr6	160926942	160926990	160926989	+	High_confidence	36	38	105	4.972778	5.390110	chr6	160926775	160927209	LTR|ERVL-MaLR|MLT1A	+	chr6	160926961	160928366	STRG.39538.1	+	160926961,160927862	160927232,160928366	0.638095
esophagus_squamous_epithelium_male_adult_37_years	chr21	34512209	34512219	34512209	-	High_confidence	2	2	6	0.284159	2.584963	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr7	37353636	37353643	37353636	-	High_confidence	68	69	125	5.919974	5.645637	chr7	37353223	37353900	LTR|ERV1|LTR12_	-	chr7	36852905	37353668	ELMO1|NM_001206482.1	-	36852905,36861658,36870392,36878009,36887559,36894853,37013298,37096618,37133129,37211385,37213334,37216644,37222614,37224878,37233094,37244355,37259180,37271831,37314849,37315919,37342612,37353031	36855751,36861736,36870475,36878117,36887672,36895017,37013435,37096727,37133234,37211517,37213457,37216695,37222693,37225030,37233194,37244391,37259350,37271882,37314922,37315960,37342763,37353668	0.960000
esophagus_squamous_epithelium_male_adult_37_years	chr21	13893162	13893181	13893180	-	RAMPAGE_only	5	5	11	0.520958	3.121928	chr21	13891692	13893290	LTR|ERVL-MaLR|MSTA-int	-	chr21	13846758	13906488	STRG.89033.19	-	13846758,13848089,13865636,13891064	13847730,13865504,13871507,13906488	0.818182
esophagus_squamous_epithelium_male_adult_37_years	chr11	65434368	65434631	65434583	+	RAMPAGE_only	51	52	423	20.033193	6.478223	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr6	26474340	26474346	26474345	+	RAMPAGE_only	6	6	14	0.663037	3.521641	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr22	18149863	18149871	18149868	+	High_confidence	17	17	42	1.989111	4.379714	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr12	48489577	48489578	48489577	+	High_confidence	9	9	11	0.520958	2.913977	chr12	48489441	48489716	SINE|Alu|AluSz6	-	chr12	48489780	48495273	STRG.63382.1	+	48489780,48490811,48492946,48494797	48489864,48490836,48492995,48495273	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr11	67848690	67848702	67848695	-	High_confidence	8	11	34	1.610233	4.513795	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67847164	67848703	STRG.59112.1	-	67847164,67848565	67847989,67848703	0.794118
esophagus_squamous_epithelium_male_adult_37_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	19	19	32	1.515513	4.415061	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.906250
esophagus_squamous_epithelium_male_adult_37_years	chr2	71024039	71024075	71024074	+	High_confidence	4	4	16	0.757757	3.250000	chr2	71020399	71024471	LTR|ERV1|HERVE-int	+	chr2	71024074	71029931	OR7E91P|NR_002185.3	+	71024074,71024305,71028915	71024200,71024394,71029931	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr11	13419702	13419719	13419702	-	RAMPAGE_only	2	2	9	0.426238	3.000000	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.777778
esophagus_squamous_epithelium_male_adult_37_years	chr1	19344364	19344410	19344388	-	RAMPAGE_only	6	6	26	1.231355	4.209867	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr8	2726956	2726963	2726962	+	High_confidence	4	4	10	0.473598	3.169925	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727085	2727496	STRG.45350.1	+	2727085	2727496	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr19	17336685	17336686	17336685	+	High_confidence	7	7	7	0.331519	2.521641	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chrX	74260144	74260173	74260172	-	RAMPAGE_only	3	4	8	0.378878	2.521641	chrX	74259927	74260438	LTR|ERV1|LTR9B	+	chrX	74219896	74292529	STRG.93990.2	-	74219896,74280930,74281701,74284742,74285914,74292426	74280494,74281085,74281848,74284948,74289386,74292529	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr16	2757853	2757944	2757853	+	High_confidence	5	5	31	1.468154	4.582913	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.903226
esophagus_squamous_epithelium_male_adult_37_years	chr14	81192654	81192702	81192654	-	RAMPAGE_only	4	4	15	0.710397	3.521641	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.866667
esophagus_squamous_epithelium_male_adult_37_years	chr1	212792444	212792473	212792472	-	High_confidence	5	7	19	0.899836	3.787144	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.736842
esophagus_squamous_epithelium_male_adult_37_years	chr6	87213932	87213934	87213932	+	High_confidence	3	5	7	0.331519	2.807355	chr6	87213856	87214060	LTR|ERV1|LTR48B	-	chr6	87213737	87222867	ZNF292|ENST00000485016.2	+	87213737,87215902,87216298,87218595,87222769	87213865,87216057,87216377,87218731,87222867	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr13	74442967	74442981	74442980	+	RAMPAGE_only	3	3	9	0.426238	2.750000	chr13	74442973	74443195	DNA|hAT-Charlie|MER30	+	chr13	74419157	74444735	LINC00381|ENST00000649990.1	+	74419157,74426092,74434502,74443159,74444097	74419228,74426418,74434622,74443284,74444735	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr21	13884568	13884598	13884597	-	High_confidence	10	10	16	0.757757	3.323231	chr21	13884330	13884649	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13885087	STRG.89033.17	-	13843069,13845004,13846012,13846758,13865636	13844135,13845274,13846141,13865504,13885087	0.937500
esophagus_squamous_epithelium_male_adult_37_years	chr1	183590910	183590926	183590910	-	High_confidence	3	3	9	0.426238	3.000000	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr19	10825211	10825221	10825220	+	RAMPAGE_only	3	3	7	0.331519	2.807355	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr19	3062977	3062986	3062977	-	High_confidence	9	9	31	1.468154	4.142295	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.935484
esophagus_squamous_epithelium_male_adult_37_years	chr12	109878996	109878999	109878996	+	High_confidence	16	16	36	1.704953	4.947703	chr12	109878962	109879076	SINE|MIR|MIRb	-	chr12	109878961	109918066	STRG.65495.4	+	109878961,109903026,109903936,109907525,109908870,109911062,109912990,109914441,109915402,109916590	109879108,109903214,109906640,109908698,109908937,109911235,109913072,109914627,109915546,109918066	0.638889
esophagus_squamous_epithelium_male_adult_37_years	chr6	160788571	160788572	160788571	+	High_confidence	49	49	55	2.604789	4.429567	chr6	160788117	160788698	LTR|ERV1|LTR10C	+	chr6	160788760	160789037	STRG.39534.1	+	160788760	160789037	0.854545
esophagus_squamous_epithelium_male_adult_37_years	chr4	86453170	86453203	86453194	-	High_confidence	15	24	98	4.641260	5.000457	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016074	86453196	MAPK10|ENST00000641854.1	-	86016074,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86107352,86159467,86194407,86354644,86453196	0.938776
esophagus_squamous_epithelium_male_adult_37_years	chrY	8126317	8126337	8126336	-	High_confidence	4	5	10	0.473598	3.169925	chrY	8126183	8126768	LTR|ERVK|LTR14C	-	chrY	8121596	8126286	STRG.95912.2	-	8121596	8126286	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr5	75336467	75336518	75336514	+	High_confidence	7	8	34	1.610233	4.222594	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.852941
esophagus_squamous_epithelium_male_adult_37_years	chr10	103890285	103890297	103890285	-	RAMPAGE_only	14	14	24	1.136635	4.349649	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103893292	STRG.56123.4	-	103882554,103889071,103892296	103882841,103889144,103893292	0.916667
esophagus_squamous_epithelium_male_adult_37_years	chr1	28272779	28272781	28272780	+	RAMPAGE_only	3	5	7	0.331519	2.584963	chr1	28272824	28273057	SINE|MIR|MIRb	+	chr1	28259526	28282491	SESN2|ENST00000253063.3	+	28259526,28269182,28271673,28272283,28272580,28273357,28274039,28274824,28279096,28280715	28259937,28269248,28271871,28272466,28272793,28273508,28274158,28275015,28279241,28282491	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr11	3380960	3380961	3380960	+	High_confidence	31	31	32	1.515513	4.567100	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr20	24930628	24930651	24930639	+	High_confidence	44	47	203	9.614038	5.897929	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930641	24932983	STRG.87688.1	+	24930641,24931346	24930774,24932983	0.935961
esophagus_squamous_epithelium_male_adult_37_years	chr6	127330917	127330938	127330917	-	High_confidence	2	2	8	0.378878	2.521641	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr9	39810023	39810094	39810033	-	High_confidence	7	7	37	1.752312	4.530550	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803267	39810013	STRG.50157.2	-	39803267,39809485,39809730	39803859,39809615,39810013	0.891892
esophagus_squamous_epithelium_male_adult_37_years	chr4	152652537	152652568	152652567	-	High_confidence	5	5	14	0.663037	3.182006	chr4	152652539	152652595	SINE|5S-Deu-L2|AmnSINE1	+	chr4	152639772	152652928	TMEM154|ENST00000613578.4	-	152639772,152640927,152643087,152644414,152652537,152652666	152639785,152640985,152643173,152644442,152652576,152652928	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr3	150575685	150575759	150575758	+	RAMPAGE_only	7	7	36	1.704953	4.426734	chr3	150575806	150576097	SINE|Alu|AluSz	+	chr3	150568031	150584234	EIF2A|ENST00000465535.1	+	150568031,150568175,150571957,150575648,150583199,150583845	150568046,150568292,150572529,150575762,150583265,150584234	0.861111
esophagus_squamous_epithelium_male_adult_37_years	chr4	73144752	73144797	73144752	-	RAMPAGE_only	3	4	14	0.663037	3.026987	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.928571
esophagus_squamous_epithelium_male_adult_37_years	chr17	59620038	59620081	59620043	+	High_confidence	9	15	31	1.468154	4.415061	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.774194
esophagus_squamous_epithelium_male_adult_37_years	chr14	50756714	50756742	50756714	-	RAMPAGE_only	2	2	8	0.378878	2.500000	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr8	100565666	100565704	100565703	-	High_confidence	22	22	40	1.894392	4.454470	chr8	100565495	100565873	LTR|ERVL-MaLR|MLT1A1	-	chr8	100565160	100565676	STRG.47616.6	-	100565160	100565676	0.775000
esophagus_squamous_epithelium_male_adult_37_years	chr17	59619894	59619923	59619894	+	High_confidence	488	564	1580	74.828473	6.309235	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.937975
esophagus_squamous_epithelium_male_adult_37_years	chr11	65431099	65431119	65431118	+	RAMPAGE_only	5	5	9	0.426238	2.500000	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr2	174410324	174410372	174410371	+	High_confidence	29	30	90	4.262381	4.682705	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.833333
esophagus_squamous_epithelium_male_adult_37_years	chr2	72693353	72693354	72693353	-	RAMPAGE_only	10	11	15	0.710397	3.323231	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.733333
esophagus_squamous_epithelium_male_adult_37_years	chr19	46927466	46927467	46927466	+	RAMPAGE_only	7	7	10	0.473598	2.947703	chr19	46927388	46927549	LINE|L2|L2b	-	chr19	46918675	47005077	ARHGAP35|ENST00000404338.7	+	46918675,46937263,46987988,46989543,46999303,47000330	46922356,46937408,46988066,46989675,46999409,47005077	0.700000
esophagus_squamous_epithelium_male_adult_37_years	chr20	62367056	62367084	62367070	-	High_confidence	3	3	14	0.663037	3.334679	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.928571
esophagus_squamous_epithelium_male_adult_37_years	chr6	29497474	29497477	29497474	+	High_confidence	41	41	61	2.888947	5.120870	chr6	29497305	29497670	LTR|ERVL-MaLR|THE1D	+	chr6	29497508	29510556	AL662860.1|ENST00000436804.1	+	29497508,29505320,29507168,29510267	29497539,29505377,29507668,29510556	0.950820
esophagus_squamous_epithelium_male_adult_37_years	chr16	12119666	12119688	12119686	+	RAMPAGE_only	5	8	18	0.852476	3.807764	chr16	12119724	12119951	SINE|MIR|MIRb	+	chr16	11976737	12574289	SNX29|ENST00000566228.5	+	11976737,11999296,12002990,12027319,12042896,12046383,12048371,12051846,12061527,12069056,12078832,12126632,12129629,12199600,12277932,12356162,12398445,12403447,12477718,12524701,12568505	11976813,11999358,12003043,12027444,12043077,12046454,12048620,12052222,12061646,12069132,12078915,12126696,12129758,12199683,12278036,12356279,12398501,12403529,12477859,12524841,12574289	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr1	171251849	171251857	171251849	-	High_confidence	14	16	32	1.515513	4.562500	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171166725	171251840	STRG.6170.1	-	171166725,171247580,171251522,171251791	171168188,171247727,171251738,171251840	0.906250
esophagus_squamous_epithelium_male_adult_37_years	chr14	34536100	34536103	34536102	-	RAMPAGE_only	3	5	7	0.331519	2.807355	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34515928	34539710	EAPP|ENST00000250454.7	-	34515928,34524696,34529357,34533443,34536093,34539554	34516586,34524807,34529475,34533539,34536275,34539710	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr11	71745875	71745899	71745875	+	High_confidence	30	30	168	7.956445	5.716312	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.934524
esophagus_squamous_epithelium_male_adult_37_years	chr12	102108244	102108263	102108244	+	High_confidence	18	22	63	2.983667	4.976306	chr12	102108033	102108604	LTR|ERVL|MLT2B3	+	chr12	102108244	102108698	STRG.65245.1	+	102108244	102108698	0.523810
esophagus_squamous_epithelium_male_adult_37_years	chr5	148089051	148089076	148089055	+	RAMPAGE_only	2	2	9	0.426238	2.750000	chr5	148089083	148089302	LINE|L2|L2c	+	chr5	148063979	148095900	SPINK5|ENST00000476697.7	+	148063979,148065346,148070322,148072147,148086404,148088541,148089018,148089216,148089493,148091164,148094353,148095817	148064099,148065372,148070450,148072220,148086532,148088605,148089093,148089272,148089621,148091228,148094481,148095900	0.555556
esophagus_squamous_epithelium_male_adult_37_years	chr10	110835177	110835178	110835177	+	High_confidence	22	22	26	1.231355	3.636921	chr10	110835193	110835289	SINE|MIR|MIR	+	chr10	110835177	110839920	STRG.56197.2	+	110835177	110839920	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr1	153967486	153967512	153967486	+	High_confidence	10	11	33	1.562873	4.127283	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.787879
esophagus_squamous_epithelium_male_adult_37_years	chr4	76234500	76234536	76234518	-	High_confidence	5	5	23	1.089275	3.936180	chr4	76234334	76234657	LTR|ERV1|MER61A	-	chr4	76158759	76234536	SCARB2|ENST00000638295.1	-	76158759,76163224,76166249,76168402,76169866,76174143,76175790,76176436,76179516,76180953,76195706,76234302	76161751,76163383,76166301,76168476,76169985,76174313,76175910,76176528,76179705,76181101,76195864,76234536	0.695652
esophagus_squamous_epithelium_male_adult_37_years	chr11	65016272	65016273	65016272	+	RAMPAGE_only	32	38	38	1.799672	4.704511	chr11	65016219	65016460	LINE|L2|L2a	-	chr11	65497687	65506431	MALAT1|ENST00000619449.2	+	65497687,65498681,65498968,65506259	65497865,65498734,65503905,65506431	0.947368
esophagus_squamous_epithelium_male_adult_37_years	chrX	56810773	56810774	56810773	+	RAMPAGE_only	23	23	28	1.326074	3.132944	chrX	56805824	56812210	LINE|L1|L1PA7	-	chrX	56729353	56817626	NBDY|ENST00000423617.2	+	56729353,56817319	56729589,56817626	0.785714
esophagus_squamous_epithelium_male_adult_37_years	chr2	69686969	69686970	69686969	+	RAMPAGE_only	4	4	7	0.331519	2.584963	chr2	69686866	69687221	LINE|CR1|L3	+	chr2	69720790	69825774	ANXA4|ENST00000477632.5	+	69720790,69781519,69788053,69804532,69806384,69807905,69812652,69816100,69818598,69819279,69820698,69825455	69720871,69781574,69788141,69804627,69806498,69810673,69812709,69816194,69818694,69819338,69820821,69825774	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr14	102083051	102083246	102083165	-	RAMPAGE_only	11	12	169	8.003805	6.352757	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr17	6853879	6853950	6853928	+	High_confidence	7	7	24	1.136635	4.175736	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853940	6895482	ALOX12P2|ENST00000574271.5	+	6853940,6854213,6892002,6894317,6894883,6895095,6895342	6854060,6854435,6892075,6894519,6895006,6895199,6895482	0.541667
esophagus_squamous_epithelium_male_adult_37_years	chr4	152412488	152412529	152412528	-	High_confidence	12	12	27	1.278714	4.384517	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.925926
esophagus_squamous_epithelium_male_adult_37_years	chr7	101217567	101217599	101217594	-	High_confidence	2	2	8	0.378878	3.000000	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr3	59046985	59047042	59047036	-	RAMPAGE_only	5	5	28	1.326074	3.825252	chr3	59046635	59047050	LINE|L2|L2	-	chr3	58887345	59049759	C3orf67|ENST00000479931.5	-	58887345,58912565,58913707,58937647,59039556,59046228,59047164,59049610	58887439,58912742,58913864,58937762,59039629,59046322,59047254,59049759	0.678571
esophagus_squamous_epithelium_male_adult_37_years	chr5	119420434	119420449	119420440	+	RAMPAGE_only	13	24	51	2.415349	5.283856	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.823529
esophagus_squamous_epithelium_male_adult_37_years	chr4	8436138	8436139	8436138	+	High_confidence	35	35	42	1.989111	4.503417	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8436139	8439301	TRMT44|ENST00000532937.1	+	8436139,8438791	8436399,8439301	0.976190
esophagus_squamous_epithelium_male_adult_37_years	chr4	8436023	8436026	8436023	-	High_confidence	71	84	155	7.340768	6.212676	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366711	8436092	STRG.24492.4	-	8366711,8370907,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8435922	8367080,8370994,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8436092	0.606452
esophagus_squamous_epithelium_male_adult_37_years	chr6	113873337	113873347	113873346	-	High_confidence	4	4	10	0.473598	3.121928	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr7	76728870	76728871	76728870	-	High_confidence	7	7	8	0.378878	2.521641	chr7	76728485	76734513	LINE|L1|L1PA3	+	chr7	76696426	76728784	STRG.42751.5	-	76696426,76728465	76697073,76728784	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr21	43775921	43775926	43775921	-	High_confidence	6	6	11	0.520958	3.121928	chr21	43775665	43776004	LTR|ERV1|MER31A	+	chr21	43772524	43776268	CSTB|ENST00000480147.3	-	43772524	43776268	0.909091
esophagus_squamous_epithelium_male_adult_37_years	chr8	129786064	129786107	129786105	-	High_confidence	2	4	10	0.473598	2.947703	chr8	129786052	129786345	SINE|Alu|AluSg7	+	chr8	129751707	129786639	STRG.48485.4	-	129751707,129752697,129760544,129762625,129765627,129776101,129777367,129786010	129752147,129752820,129760589,129762731,129765793,129776285,129777591,129786639	0.800000
esophagus_squamous_epithelium_male_adult_37_years	chr11	7905973	7905975	7905973	-	High_confidence	3	5	8	0.378878	2.807355	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr5	34918370	34918386	34918385	+	RAMPAGE_only	3	3	6	0.284159	2.584963	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr11	65438554	65438816	65438781	+	RAMPAGE_only	27	27	303	14.350017	5.634045	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.996700
esophagus_squamous_epithelium_male_adult_37_years	chr9	73080369	73080370	73080369	-	High_confidence	9	9	9	0.426238	2.947703	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr15	92914950	92914974	92914950	+	High_confidence	5	5	16	0.757757	3.875000	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr6	36540276	36540278	36540276	-	RAMPAGE_only	3	6	8	0.378878	2.750000	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36547470	STK38|ENST00000229812.7	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540207,36547470	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr21	13863518	13863548	13863518	-	RAMPAGE_only	2	2	8	0.378878	2.807355	chr21	13862510	13863665	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13885087	STRG.89033.17	-	13843069,13845004,13846012,13846758,13865636	13844135,13845274,13846141,13865504,13885087	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr3	197299286	197299320	197299316	-	High_confidence	16	18	70	3.315186	5.691787	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.871429
esophagus_squamous_epithelium_male_adult_37_years	chr9	92536601	92536602	92536601	-	High_confidence	6	6	6	0.284159	2.584963	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92493546	92536092	ECM2|NM_001197296.1	-	92493546,92500726,92502512,92505532,92509898,92512010,92514630,92517686,92522574,92535932	92494149,92501053,92502652,92505690,92510034,92512126,92515137,92517875,92522893,92536092	0.833333
esophagus_squamous_epithelium_male_adult_37_years	chr1	51403428	51403484	51403432	-	RAMPAGE_only	5	5	18	0.852476	3.734522	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.722222
esophagus_squamous_epithelium_male_adult_37_years	chr16	81181319	81181331	81181330	-	High_confidence	12	12	29	1.373434	4.606739	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.827586
esophagus_squamous_epithelium_male_adult_37_years	chr10	93431427	93431449	93431448	-	RAMPAGE_only	4	5	10	0.473598	2.947703	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr2	231072241	231072273	231072241	+	RAMPAGE_only	2	2	13	0.615677	3.180833	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.846154
esophagus_squamous_epithelium_male_adult_37_years	chr7	107580245	107580267	107580245	+	High_confidence	818	822	3634	172.105489	7.120687	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.917446
esophagus_squamous_epithelium_male_adult_37_years	chr13	106574779	106574783	106574782	+	High_confidence	7	11	18	0.852476	3.734522	chr13	106574585	106575011	LTR|ERVL-MaLR|THE1C	+	chr13	106574669	106589081	STRG.68206.1	+	106574669	106589081	0.722222
esophagus_squamous_epithelium_male_adult_37_years	chrX	53220856	53220887	53220856	-	RAMPAGE_only	2	2	9	0.426238	3.169925	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr3	53371324	53371325	53371324	-	High_confidence	4	4	6	0.284159	2.584963	chr3	53365276	53371325	LINE|L1|L1PA2	-	chr3	53370426	53371317	STRG.18980.1	-	53370426	53371317	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr5	140651849	140651873	140651849	+	RAMPAGE_only	15	17	73	3.457265	4.942097	chr5	140651884	140651935	DNA|hAT-Charlie|MER5A	+	chr5	140648093	140654727	IK|ENST00000502899.2	+	140648093,140648470,140651713,140652087,140652976,140653937,140654515,140654680	140648162,140648537,140651806,140652147,140653144,140654052,140654586,140654727	0.917808
esophagus_squamous_epithelium_male_adult_37_years	chr8	17692207	17692264	17692233	-	High_confidence	3	3	29	1.373434	4.356558	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.793103
esophagus_squamous_epithelium_male_adult_37_years	chr17	19386333	19386433	19386359	-	High_confidence	23	24	135	6.393572	6.252219	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.992593
esophagus_squamous_epithelium_male_adult_37_years	chr15	45631147	45631148	45631147	+	High_confidence	6	6	6	0.284159	2.584963	chr15	45630952	45631306	LTR|ERVL-MaLR|THE1A	+	chr15	45631147	45691280	SQOR|ENST00000568606.5	+	45631147,45631926,45658906,45661954,45669927,45673606,45676100,45682477,45688336,45689038,45690972	45631230,45632015,45659157,45662125,45669981,45673801,45676310,45682661,45688404,45689217,45691280	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr6	42403632	42403673	42403667	-	RAMPAGE_only	5	5	20	0.947196	3.497156	chr6	42403232	42403669	LTR|ERVL-MaLR|MLT1C	+	chr6	42228125	42451261	TRERF1|ENST00000372917.8	-	42228125,42232680,42236204,42243247,42246455,42254850,42256727,42256962,42258134,42259338,42264703,42265750,42268153,42269498,42300637,42362946,42451176	42228669,42232892,42236411,42243361,42246544,42254926,42256831,42257102,42258201,42259723,42264854,42265797,42269251,42269848,42300749,42363079,42451261	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr1	29165963	29166010	29165963	-	RAMPAGE_only	3	3	14	0.663037	3.546594	chr1	29165912	29166153	SINE|tRNA-RTE|MamSINE1	-	chr1	29147852	29173494	SRSF4|ENST00000634348.1	-	29147852,29150102,29154695,29159373,29165889,29166728,29168502	29149226,29150192,29154910,29160517,29166064,29166866,29173494	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr13	109272198	109272203	109272202	+	RAMPAGE_only	13	14	21	0.994556	4.121928	chr13	109271794	109272374	LTR|ERV1|LTR9	+	chr13	109269633	109273838	AL161431.1|ENST00000618966.1	+	109269633	109273838	0.952381
esophagus_squamous_epithelium_male_adult_37_years	chr12	46243232	46243233	46243232	-	RAMPAGE_only	4	4	6	0.284159	2.584963	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr16	12117405	12117516	12117405	+	High_confidence	13	13	92	4.357101	5.685125	chr16	12117445	12117786	LINE|L1|L1MB5	+	chr16	12116625	12404925	STRG.75909.3	+	12116625,12126632,12129629,12199600,12277932,12356162,12398445,12403447	12117643,12126696,12129758,12199683,12278036,12356279,12398501,12404925	0.739130
esophagus_squamous_epithelium_male_adult_37_years	chr2	182030832	182030852	182030851	+	High_confidence	6	6	19	0.899836	3.461320	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.631579
esophagus_squamous_epithelium_male_adult_37_years	chr17	21001598	21001610	21001609	-	RAMPAGE_only	3	6	9	0.426238	2.500000	chr17	21001557	21001631	DNA|hAT-Charlie|MER58C	+	chr17	20999592	21043039	USP22|ENST00000261497.8	-	20999592,21004201,21004927,21006895,21007869,21011150,21012829,21015751,21017941,21019083,21021112,21028541,21042664	21003073,21004351,21004990,21006987,21007996,21011309,21012935,21015899,21018111,21019185,21021226,21028674,21043039	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr12	7502517	7502544	7502517	-	High_confidence	6	6	18	0.852476	3.690117	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.944444
esophagus_squamous_epithelium_male_adult_37_years	chr7	7566032	7566052	7566032	-	High_confidence	4	4	14	0.663037	3.334679	chr7	7565778	7566082	SINE|Alu|AluSc	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr13	43062226	43062239	43062226	+	RAMPAGE_only	3	3	8	0.378878	2.500000	chr13	43062071	43062490	LTR|ERVL|LTR33	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr7	110919920	110919926	110919920	+	High_confidence	6	8	16	0.757757	3.875000	chr7	110919742	110920295	LTR|ERVL|MLT2A2	+	chr7	110919926	110933260	STRG.43930.1	+	110919926,110931188,110933141	110920212,110931357,110933260	0.625000
esophagus_squamous_epithelium_male_adult_37_years	chr3	58200634	58200641	58200634	-	RAMPAGE_only	3	3	8	0.378878	2.807355	chr3	58200615	58200774	SINE|MIR|MIR	+	chr3	58192627	58204823	DNASE1L3|ENST00000477209.5	-	58192627,58197820,58200996,58204768	58192803,58197978,58201109,58204823	0.625000
esophagus_squamous_epithelium_male_adult_37_years	chr8	11795578	11795579	11795578	+	High_confidence	26	26	27	1.278714	4.103910	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.962963
esophagus_squamous_epithelium_male_adult_37_years	chr16	15740077	15740182	15740077	-	RAMPAGE_only	10	11	119	5.635815	6.304358	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.991597
esophagus_squamous_epithelium_male_adult_37_years	chr12	12184004	12184019	12184018	-	RAMPAGE_only	4	4	8	0.378878	2.500000	chr12	12183981	12184016	LINE|RTE-BovB|MamRTE1	-	chr12	12116028	12244304	LRP6|ENST00000538239.5	-	12116028,12120369,12121085,12124564,12125295,12126690,12130782,12131820,12135174,12138324,12147365,12148941,12150835,12158828,12159779,12162192,12164272,12165078,12179809,12181042,12183979,12186922,12203202,12244261	12119330,12120403,12121420,12124662,12125432,12126921,12130893,12132057,12135300,12138534,12147556,12149153,12151038,12159155,12159964,12162419,12164562,12165295,12179981,12181439,12184111,12187119,12203400,12244304	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr14	80278651	80278654	80278651	-	RAMPAGE_only	4	5	9	0.426238	2.947703	chr14	80278355	80278872	LTR|ERVL|MLT2B4	-	chr14	80278428	80315838	DIO2|ENST00000556384.1	-	80278428,80313468,80315773	80278519,80313579,80315838	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr11	120128587	120128654	120128634	-	High_confidence	3	3	18	0.852476	3.905765	chr11	120128621	120128702	LINE|L2|L2a	-	chr11	120112409	120128913	TRIM29|ENST00000529044.5	-	120112409,120115337,120118222,120120572,120122953,120125690,120127335,120128399,120128647	120112476,120115414,120118321,120120665,120123055,120125889,120127569,120128495,120128913	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr5	148089175	148089178	148089177	+	RAMPAGE_only	3	4	7	0.331519	2.584963	chr5	148089083	148089302	LINE|L2|L2c	+	chr5	148064002	148137289	SPINK5|ENST00000256084.7	+	148064002,148065346,148070322,148072147,148086404,148088541,148089493,148091164,148094353,148095817,148097866,148099233,148100453,148101354,148101780,148104951,148107036,148108752,148111767,148112867,148114361,148116369,148118436,148118985,148120008,148120294,148123832,148124764,148125722,148126982,148131258,148133796,148136982	148064099,148065372,148070450,148072220,148086532,148088605,148089621,148091228,148094481,148095905,148097994,148099315,148100581,148101436,148101908,148105000,148107164,148108837,148111895,148112934,148114489,148116466,148118564,148119058,148120136,148120391,148123960,148124837,148125850,148127079,148131389,148133887,148137289	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr1	17204822	17204840	17204822	+	High_confidence	7	7	14	0.663037	3.235926	chr1	17204627	17204823	SINE|MIR|MIR	-	chr1	17205125	17245968	STRG.779.5	+	17205125,17222289,17225810,17226032,17228624,17228947,17230084,17230571,17232818,17237313,17238615,17239703,17244009	17205309,17224428,17225928,17226158,17228797,17229051,17230208,17230679,17232970,17237458,17238709,17240760,17245968	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr19	58306146	58306162	58306146	+	High_confidence	2	2	8	0.378878	2.521641	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr11	112151045	112151058	112151057	-	High_confidence	4	4	10	0.473598	2.947703	chr11	112151042	112151534	LINE|L1|L1ME3G	+	chr11	112143256	112151073	IL18|ENST00000525547.5	-	112143256,112148602,112150071	112143817,112148736,112151073	0.800000
esophagus_squamous_epithelium_male_adult_37_years	chr9	92077195	92077243	92077199	-	RAMPAGE_only	13	13	41	1.941752	4.997677	chr9	92072526	92078223	LTR|ERV1|HERVH-int	+	chr9	92028457	92080076	SPTLC1|ENST00000646481.1	-	92028457,92029179,92034809,92038247,92045998,92046274,92047171,92047612,92049959,92055404,92059178,92067965,92076797,92080015	92028757,92029346,92034883,92038365,92046053,92046334,92047268,92047708,92050067,92055494,92059308,92068098,92077035,92080076	0.707317
esophagus_squamous_epithelium_male_adult_37_years	chr15	57451531	57451565	57451564	+	RAMPAGE_only	16	21	65	3.078387	4.470464	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57420798	57462005	STRG.73362.4	+	57420798,57437984,57440376,57442372,57451499,57452140,57453682,57461679	57421250,57439601,57440471,57442478,57451601,57452289,57453818,57462005	0.984615
esophagus_squamous_epithelium_male_adult_37_years	chr2	29114158	29114197	29114173	+	High_confidence	8	8	29	1.373434	3.878907	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.896552
esophagus_squamous_epithelium_male_adult_37_years	chr14	81170392	81170414	81170412	-	High_confidence	6	11	28	1.326074	4.253434	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.821429
esophagus_squamous_epithelium_male_adult_37_years	chr1	12409844	12409855	12409854	+	RAMPAGE_only	36	38	95	4.499180	6.146017	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12400309	12510346	STRG.446.9	+	12400309,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852	12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12510346	0.694737
esophagus_squamous_epithelium_male_adult_37_years	chr12	26914560	26914572	26914571	-	RAMPAGE_only	4	4	8	0.378878	2.750000	chr12	26914520	26914587	LINE|RTE-BovB|MamRTE1	+	chr12	26905180	26917734	INTS13|ENST00000538155.5	-	26905180,26906301,26911177,26913456,26913973,26916001,26917351,26917643	26905536,26906437,26911317,26913687,26914128,26916180,26917441,26917734	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr2	86826129	86826130	86826129	-	RAMPAGE_only	16	16	21	0.994556	3.046439	chr2	86826118	86826191	SINE|MIR|MIR1_Amn	+	chr2	86815147	86822345	STRG.11793.1	-	86815147,86822320	86815718,86822345	0.904762
esophagus_squamous_epithelium_male_adult_37_years	chr1	17238336	17238356	17238355	+	RAMPAGE_only	9	9	15	0.710397	3.664498	chr1	17238342	17238535	LINE|L2|L2b	-	chr1	17205125	17245968	STRG.779.6	+	17205125,17222289,17224366,17225810,17226032,17228624,17228947,17230084,17230571,17232818,17237313,17239703,17244009	17205309,17223693,17224428,17225928,17226158,17228797,17229051,17230208,17230679,17232970,17238709,17240760,17245968	0.800000
esophagus_squamous_epithelium_male_adult_37_years	chr2	55618850	55618870	55618850	-	High_confidence	3	3	7	0.331519	2.807355	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr1	6820197	6820198	6820197	+	RAMPAGE_only	7	8	9	0.426238	2.503258	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6853094	6872045	CAMTA1|ENST00000472283.1	+	6853094,6871756	6853189,6872045	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr21	13964877	13964881	13964877	-	RAMPAGE_only	3	3	8	0.378878	2.807355	chr21	13964463	13965004	LTR|ERVL|MER68	+	chr21	13936992	13972129	STRG.89033.5	-	13936992,13939245,13940814,13943743,13945038,13951066,13951231,13954065,13969972	13938067,13939428,13940978,13943862,13945109,13951139,13951260,13967436,13972129	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr2	173533010	173533015	173533014	+	High_confidence	13	14	20	0.947196	4.247928	chr2	173527289	173533317	LINE|L1|L1PA3	-	chr2	173532865	173698971	STRG.14205.2	+	173532865,173697719	173533339,173698971	0.600000
esophagus_squamous_epithelium_male_adult_37_years	chr14	80231057	80231058	80231057	-	High_confidence	556	557	594	28.131717	7.519819	chr14	80230830	80231256	LTR|ERVL|MLT2A1	-	chr14	80202818	80231054	STRG.70880.5	-	80202818,80206230,80211250,80215971	80203288,80206338,80211525,80231054	0.872054
esophagus_squamous_epithelium_male_adult_37_years	chr12	46254815	46254848	46254815	-	RAMPAGE_only	3	3	10	0.473598	2.646439	chr12	46253756	46255325	LTR|ERV1|MER41-int	-	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.600000
esophagus_squamous_epithelium_male_adult_37_years	chr6	13794241	13794242	13794241	-	RAMPAGE_only	97	97	134	6.346212	4.166573	chr6	13794117	13794268	SINE|Alu|FLAM_C	-	chr6	13787133	13801345	MCUR1|ENST00000607303.1	-	13787133,13788645,13791877,13793893,13798832,13800340,13801287	13787355,13788704,13791992,13793947,13798904,13800382,13801345	0.940299
esophagus_squamous_epithelium_male_adult_37_years	chr8	102275527	102275543	102275542	-	RAMPAGE_only	3	3	7	0.331519	2.807355	chr8	102275368	102275493	LINE|L1|L1ME3E	-	chr8	102271193	102276820	UBR5|ENST00000521566.1	-	102271193,102272528,102275520,102275707,102276773	102271245,102272772,102275619,102275828,102276820	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr17	43508424	43508454	43508424	+	RAMPAGE_only	5	5	15	0.710397	3.240224	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491310	43526786	STRG.79876.4	+	43491310,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520129,43521368,43522046,43523627	43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43517322,43520879,43521565,43522226,43526786	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr9	127517476	127517477	127517476	-	RAMPAGE_only	6	6	9	0.426238	2.750000	chr9	127517274	127517652	LINE|L2|L2a	+	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr16	4355592	4355593	4355592	-	High_confidence	68	70	70	3.315186	5.289833	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.842857
esophagus_squamous_epithelium_male_adult_37_years	chr4	79744340	79744352	79744340	-	High_confidence	17	19	36	1.704953	4.593429	chr4	79743637	79744703	LINE|L2|L2a	+	chr4	79702683	79744333	STRG.26082.2	-	79702683,79744218	79702991,79744333	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr4	187814822	187814832	187814822	+	High_confidence	2	3	6	0.284159	2.584963	chr4	187814585	187815260	LTR|ERV1|MER50	+	chr4	187814845	187815513	STRG.28626.1	+	187814845	187815513	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr19	41545191	41545192	41545191	+	RAMPAGE_only	105	106	106	5.020138	5.562035	chr19	41544577	41545607	LTR|ERVK|LTR5A	+	chr19	41549526	41550705	STRG.85381.2	+	41549526	41550705	0.726415
esophagus_squamous_epithelium_male_adult_37_years	chr7	101308293	101308317	101308293	+	High_confidence	33	37	221	10.466514	6.511490	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.954751
esophagus_squamous_epithelium_male_adult_37_years	chr3	58526765	58526766	58526765	-	High_confidence	19	20	26	1.231355	4.517559	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	0.961538
esophagus_squamous_epithelium_male_adult_37_years	chr17	61952970	61952982	61952970	-	RAMPAGE_only	3	3	6	0.284159	2.584963	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr12	57532038	57532063	57532038	-	RAMPAGE_only	4	4	13	0.615677	2.855389	chr12	57531960	57532134	LINE|RTE-BovB|MamRTE1	+	chr12	57530310	57547141	DCTN2|ENST00000434715.7	-	57530310,57532014,57532212,57532571,57532732,57532983,57533237,57533952,57534291,57535055,57535483,57535748,57538518,57541363,57546027,57547027	57530775,57532106,57532315,57532643,57532810,57533022,57533303,57534097,57534452,57535154,57535545,57535845,57538524,57541372,57546096,57547141	0.923077
esophagus_squamous_epithelium_male_adult_37_years	chr16	81664343	81664344	81664343	+	RAMPAGE_only	9	10	14	0.663037	3.238901	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.785714
esophagus_squamous_epithelium_male_adult_37_years	chr12	46243267	46243294	46243293	-	RAMPAGE_only	6	8	14	0.663037	3.392747	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.928571
esophagus_squamous_epithelium_male_adult_37_years	chr2	218287266	218287280	218287279	-	High_confidence	19	19	43	2.036471	4.200008	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr21	36980966	36980983	36980982	-	High_confidence	3	3	9	0.426238	2.947703	chr21	36980978	36981177	LINE|L2|L2b	+	chr21	36750887	36980964	HLCS|ENST00000612277.4	-	36750887,36756541,36759726,36765011,36767217,36896859,36930250,36936448,36938831,36946008,36962035,36980783	36754417,36756755,36759841,36765172,36767285,36897131,36930433,36937392,36938994,36946154,36962170,36980964	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr17	77390290	77390291	77390290	+	RAMPAGE_only	8	8	10	0.473598	2.725481	chr17	77390212	77390366	SINE|Alu|AluYc	+	chr17	77380122	77402483	SEPT9|ENST00000589140.1	+	77380122,77402058	77380249,77402483	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr9	72616449	72616450	72616449	+	High_confidence	6	6	8	0.378878	2.750000	chr9	72616393	72616469	SINE|MIR|MIRb	+	chr9	72616265	72836351	TMC1|ENST00000340019.4	+	72616265,72627920,72648596,72688708,72694542,72700517,72740118,72742443,72751849,72754785,72772412,72788338,72789122,72791885,72792190,72805381,72816142,72820841,72826868,72830450,72830630,72835950	72616477,72628063,72648664,72688756,72694714,72700643,72740209,72742525,72751956,72754884,72772555,72788483,72789317,72792065,72792352,72805510,72816210,72821081,72826994,72830529,72830682,72836351	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	14	14	17	0.805116	3.499228	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr21	28674853	28674854	28674853	-	RAMPAGE_only	7	7	10	0.473598	3.169925	chr21	28674675	28675025	LTR|ERVL-MaLR|MLT1A0	-	chr21	28569632	28774501	STRG.89592.5	-	28569632,28626584,28771993	28577380,28626676,28774501	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr2	31254108	31254109	31254108	+	RAMPAGE_only	45	45	56	2.652148	5.481649	chr2	31254076	31254207	SINE|MIR|MIRc	-	chr2	31249270	31269447	STRG.10058.2	+	31249270,31254836,31260509,31261548,31266176	31249468,31254991,31260922,31261713,31269447	0.785714
esophagus_squamous_epithelium_male_adult_37_years	chr7	80369531	80369569	80369531	+	High_confidence	13	13	46	2.178550	4.819305	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.804348
esophagus_squamous_epithelium_male_adult_37_years	chr20	37344680	37344696	37344695	+	High_confidence	6	7	22	1.041915	4.061482	chr20	37344715	37344779	SINE|MIR|MIRc	+	chr20	37344684	37405432	SRC|NM_005417.4	+	37344684,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.590909
esophagus_squamous_epithelium_male_adult_37_years	chr21	13898947	13899020	13898960	-	RAMPAGE_only	9	15	43	2.036471	4.534066	chr21	13898559	13899880	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13906488	STRG.89033.13	-	13843069,13844021,13845004,13846012,13846758,13865636,13894138	13843432,13844135,13845274,13846141,13865504,13874584,13906488	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr16	8842153	8842175	8842153	+	High_confidence	13	13	23	1.089275	4.095795	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.913043
esophagus_squamous_epithelium_male_adult_37_years	chr10	45000503	45000523	45000503	+	High_confidence	13	13	61	2.888947	5.034926	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.934426
esophagus_squamous_epithelium_male_adult_37_years	chr4	170226587	170226588	170226587	+	High_confidence	14	15	19	0.899836	4.058814	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.578947
esophagus_squamous_epithelium_male_adult_37_years	chr8	99893444	99893445	99893444	-	High_confidence	10	11	11	0.520958	2.646439	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.909091
esophagus_squamous_epithelium_male_adult_37_years	chr14	95516119	95516121	95516120	+	High_confidence	3	5	8	0.378878	2.750000	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr11	34659787	34659882	34659881	+	RAMPAGE_only	68	85	226	10.703313	5.146274	chr11	34659791	34660003	DNA|hAT-Charlie|MER20	-	chr11	34632463	34663288	EHF|NM_001206616.1	+	34632463,34642627,34646438,34649018,34651541,34651736,34656907,34658532,34658831	34632652,34642727,34646684,34649081,34651610,34651805,34656970,34658728,34663288	0.991150
esophagus_squamous_epithelium_male_adult_37_years	chr19	48637367	48637379	48637367	-	High_confidence	9	9	19	0.899836	4.142664	chr19	48637310	48637367	LINE|L1|X9_LINE	+	chr19	48633085	48637363	DBP|ENST00000601104.1	-	48633085,48635579,48636855	48633655,48635990,48637363	0.894737
esophagus_squamous_epithelium_male_adult_37_years	chr16	70561225	70561226	70561225	+	High_confidence	7	7	9	0.426238	2.947703	chr16	70561012	70561320	SINE|Alu|AluSx	-	chr16	70561348	70567541	SF3B3|ENST00000563739.5	+	70561348,70563875,70565064,70565367,70567410	70561784,70564050,70565270,70565524,70567541	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chrX	147937518	147937575	147937528	+	RAMPAGE_only	3	3	20	0.947196	4.037401	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.95414.11	+	147940580,147943130,147944943,147945533	147940662,147943326,147945051,147950315	0.800000
esophagus_squamous_epithelium_male_adult_37_years	chr12	10454487	10454505	10454493	-	High_confidence	9	9	27	1.278714	4.132944	chr12	10454129	10454577	LINE|L1|L1M3a	+	chr12	10446027	10454616	KLRC1|NM_213658.2	-	10446027,10447531,10449236,10449913,10450483,10450969,10453197,10454331	10446662,10447632,10449388,10449967,10450579,10451187,10453269,10454616	0.555556
esophagus_squamous_epithelium_male_adult_37_years	chr3	134485403	134485416	134485415	-	High_confidence	3	5	9	0.426238	2.750000	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr11	65429824	65429912	65429831	+	RAMPAGE_only	30	35	207	9.803477	6.273272	chr11	65429592	65429862	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr1	16017942	16017988	16017942	-	High_confidence	2	2	12	0.568318	3.277613	chr1	16017886	16017984	LINE|CR1|L3	+	chr1	16015498	16018005	HSPB7|ENST00000406363.2	-	16015498,16017073,16017764	16015759,16017219,16018005	0.583333
esophagus_squamous_epithelium_male_adult_37_years	chr6	166957430	166957439	166957430	-	High_confidence	4	5	11	0.520958	3.459432	chr6	166957416	166957859	LINE|L2|L2a	+	chr6	166929539	166957184	RNASET2|ENST00000476238.6	-	166929539,166931043,166934090,166938894,166943018,166946681,166948569,166952487,166956096,166957125	166929791,166931118,166934136,166939008,166943089,166946739,166948625,166952548,166956191,166957184	0.909091
esophagus_squamous_epithelium_male_adult_37_years	chr5	126600248	126600249	126600248	+	High_confidence	19	20	20	0.947196	3.932138	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	0.950000
esophagus_squamous_epithelium_male_adult_37_years	chr1	171129847	171129850	171129847	-	High_confidence	4	5	11	0.520958	3.121928	chr1	171129628	171130038	LTR|ERVL-MaLR|MSTB	-	chr1	171120010	171130284	STRG.6124.1	-	171120010,171121749,171129713	171120556,171121863,171130284	0.545455
esophagus_squamous_epithelium_male_adult_37_years	chr5	72926306	72926307	72926306	+	High_confidence	10	11	11	0.520958	3.095795	chr5	72925316	72926709	LTR|ERV1|LTR12C	+	chr5	72926134	72927231	STRG.30274.1	+	72926134	72927231	0.909091
esophagus_squamous_epithelium_male_adult_37_years	chr4	99906556	99906612	99906556	-	High_confidence	4	4	19	0.899836	3.892407	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.894737
esophagus_squamous_epithelium_male_adult_37_years	chr3	33864021	33864091	33864090	+	RAMPAGE_only	7	9	51	2.415349	4.498172	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.980392
esophagus_squamous_epithelium_male_adult_37_years	chr17	32684271	32684272	32684271	-	RAMPAGE_only	85	88	97	4.593900	5.700029	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32494718	32659406	MYO1D|ENST00000577352.5	-	32494718,32605086,32638721,32653842,32654476,32659114	32494915,32605241,32638835,32653947,32654621,32659406	0.845361
esophagus_squamous_epithelium_male_adult_37_years	chr4	128428000	128428006	128428005	+	High_confidence	11	11	20	0.947196	3.984184	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.950000
esophagus_squamous_epithelium_male_adult_37_years	chr11	73217618	73217645	73217644	+	High_confidence	7	7	18	0.852476	3.286896	chr11	73217526	73217658	LINE|L2|L2b	-	chr11	73217573	73235932	STRG.59345.4	+	73217573,73227980,73234155	73217709,73228175,73235932	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr8	26395611	26395612	26395611	+	High_confidence	38	47	52	2.462709	4.694498	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr15	89498874	89498880	89498874	+	High_confidence	6	8	13	0.615677	3.546594	chr15	89498797	89499018	SINE|MIR|MIRb	-	chr15	89498668	89502016	STRG.74872.1	+	89498668,89500054	89499099,89502016	0.769231
esophagus_squamous_epithelium_male_adult_37_years	chr19	48868595	48868617	48868613	-	High_confidence	149	172	609	28.842114	7.281512	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.975369
esophagus_squamous_epithelium_male_adult_37_years	chr12	119179219	119179315	119179240	+	High_confidence	9	9	69	3.267826	3.845481	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.985507
esophagus_squamous_epithelium_male_adult_37_years	chr1	157003703	157003704	157003703	-	RAMPAGE_only	4	6	7	0.331519	2.584963	chr1	157003457	157003683	SINE|MIR|MIRb	-	chr1	156935523	157045073	ARHGEF11|ENST00000361409.2	-	156935523,156936815,156937248,156938417,156939547,156940206,156941371,156941863,156942689,156943934,156944357,156945018,156946044,156946661,156946935,156947303,156947768,156948180,156948318,156951572,156954891,156955702,156956419,156957791,156958741,156959045,156960417,156961676,156963202,156963519,156967986,156969281,156969997,156976982,156978203,156979228,156980436,156984338,156986081,157044298	156936058,156937005,156937496,156938513,156939910,156940425,156941433,156941989,156942780,156944102,156944433,156945197,156946162,156946787,156947015,156947450,156947956,156948228,156948498,156951699,156954921,156955799,156956564,156957815,156958864,156959142,156960460,156961775,156963304,156963594,156968124,156969358,156970043,156977054,156978382,156979286,156980486,156984437,156986173,157045073	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr22	50756861	50756883	50756881	+	High_confidence	3	6	11	0.520958	3.459432	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50799123	STRG.91823.5	+	50756947,50783119,50785172,50798654	50757326,50783294,50785293,50799123	0.727273
esophagus_squamous_epithelium_male_adult_37_years	chr12	112506799	112506813	112506799	+	RAMPAGE_only	3	3	10	0.473598	3.169925	chr12	112506599	112506946	LTR|ERVL-MaLR|MLT1H	-	chr12	112418913	112509913	PTPN11|ENST00000351677.6	+	112418913,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486474,112488442,112489023,112502143,112504694,112505824	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504796,112509913	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr4	78971798	78971826	78971825	+	High_confidence	11	11	34	1.610233	4.577820	chr4	78971775	78972175	LINE|L1|L1MA7	-	chr4	78971747	79308799	LINC01088|NR_038342.1	+	78971747,78972999,79086095,79195835,79306690,79308272	78971876,78973052,79086262,79195932,79306728,79308799	0.852941
esophagus_squamous_epithelium_male_adult_37_years	chrX	53576945	53576973	53576972	-	RAMPAGE_only	3	4	8	0.378878	2.500000	chrX	53576946	53576998	LTR|ERV1|LTR43-int	+	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr4	176277282	176277303	176277295	-	RAMPAGE_only	2	2	10	0.473598	2.947703	chr4	176277280	176277397	LINE|L2|L2c	-	chr4	176213672	176269222	ASB5|ENST00000296525.7	-	176213672,176216817,176221154,176221449,176222312,176225261,176268912	176215727,176217009,176221289,176221600,176222420,176225341,176269222	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr7	40509485	40509510	40509494	+	RAMPAGE_only	2	2	7	0.331519	2.584963	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr5	176411456	176411459	176411458	-	RAMPAGE_only	589	711	921	43.618370	6.448646	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.877307
esophagus_squamous_epithelium_male_adult_37_years	chrY	3002893	3002986	3002893	+	High_confidence	70	71	262	12.408266	6.823257	chrY	3002436	3002992	LTR|ERV1|LTR4	+	chrY	3002997	3078120	STRG.95861.3	+	3002997,3074938	3073781,3078120	0.667939
esophagus_squamous_epithelium_male_adult_37_years	chr20	31566037	31566084	31566037	+	High_confidence	18	18	93	4.404461	5.432323	chr20	31566028	31566111	SINE|MIR|MIR3	+	chr20	31566153	31569567	HM13|ENST00000487281.1	+	31566153,31567639,31569119	31566295,31567806,31569567	0.849462
esophagus_squamous_epithelium_male_adult_37_years	chr21	43775963	43775974	43775963	-	High_confidence	3	3	8	0.378878	2.750000	chr21	43775665	43776004	LTR|ERV1|MER31A	+	chr21	43772510	43776238	CSTB|ENST00000639959.1	-	43772510,43776203	43774330,43776238	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr12	31959160	31959179	31959160	+	High_confidence	6	6	15	0.710397	3.182006	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959418	31993107	KIAA1551|ENST00000312561.8	+	31959418,31960776,31970188,31980877,31987238,31992377	31959491,31960871,31970356,31985957,31987322,31993107	0.933333
esophagus_squamous_epithelium_male_adult_37_years	chr11	65440660	65440882	65440781	+	RAMPAGE_only	71	72	448	21.217187	6.028679	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr7	158863386	158863408	158863388	+	RAMPAGE_only	2	4	9	0.426238	3.000000	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.777778
esophagus_squamous_epithelium_male_adult_37_years	chr1	97904675	97904676	97904675	-	RAMPAGE_only	4	4	6	0.284159	2.584963	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97731976	97920997	STRG.4078.3	-	97731976,97740391,97828113,97883263,97920883	97732470,97740479,97828196,97883374,97920997	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr10	101368216	101368227	101368216	+	RAMPAGE_only	4	7	14	0.663037	2.950212	chr10	101368004	101368435	LTR|ERVL-MaLR|MSTB1	+	chr10	101354533	101526083	BTRC|ENST00000370183.2	+	101354533,101430344,101461980,101479367,101521638,101526012	101354609,101430452,101462058,101479457,101521870,101526083	0.928571
esophagus_squamous_epithelium_male_adult_37_years	chr1	162419791	162419799	162419798	+	High_confidence	4	4	8	0.378878	2.521641	chr1	162419359	162419942	LTR|ERVK|LTR14C	+	chr1	162419794	162420676	STRG.5796.1	+	162419794	162420676	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr20	2325858	2325918	2325858	+	RAMPAGE_only	32	32	215	10.182356	6.746615	chr20	2325789	2325878	SINE|MIR|MIR3	+	chr20	2296000	2341078	TGM3|ENST00000381458.5	+	2296000,2309656,2310177,2311010,2312897,2317067,2317349,2325848,2328119,2332001,2335115,2339853,2340433	2296070,2309830,2310417,2311129,2313026,2317245,2317485,2325952,2328365,2332310,2335273,2339987,2341078	0.790698
esophagus_squamous_epithelium_male_adult_37_years	chr17	45585820	45585826	45585825	-	High_confidence	3	3	8	0.378878	2.807355	chr17	45585678	45585861	SINE|Alu|AluSp	+	chr17	45506740	45586413	STRG.80039.4	-	45506740,45508484,45510243,45513184,45513867,45517177,45517860,45521306,45539162,45539891,45542763,45545604,45547726,45551439,45585701	45508406,45508539,45510293,45513289,45515525,45517282,45519518,45521425,45539243,45539963,45542835,45545676,45550732,45551537,45586413	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr16	2205780	2205851	2205850	+	High_confidence	8	8	55	2.604789	4.350809	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.909091
esophagus_squamous_epithelium_male_adult_37_years	chr5	150125450	150125474	150125450	-	RAMPAGE_only	6	6	13	0.615677	3.084963	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.923077
esophagus_squamous_epithelium_male_adult_37_years	chr11	17282810	17282822	17282810	+	RAMPAGE_only	6	6	13	0.615677	3.418296	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.846154
esophagus_squamous_epithelium_male_adult_37_years	chr12	27579368	27579379	27579368	+	RAMPAGE_only	3	3	7	0.331519	2.584963	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27524255	27695564	PPFIBP1|ENST00000228425.10	+	27524255,27578151,27633361,27634909,27646061,27647728,27650009,27654721,27656615,27658815,27660883,27664361,27667165,27671430,27672426,27673766,27674191,27676427,27677063,27679488,27679932,27681545,27682386,27682614,27687384,27688297,27689014,27691748,27692590,27692795	27524365,27578239,27633460,27635115,27646148,27647842,27650141,27654814,27656730,27658848,27660945,27664446,27667320,27671546,27672483,27673827,27674221,27676599,27677096,27679639,27680061,27681696,27682498,27682703,27687507,27688423,27689203,27691928,27692656,27695564	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chrX	5726324	5726325	5726324	-	High_confidence	128	135	165	7.814366	5.310437	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5718745	5726310	STRG.91976.1	-	5718745,5725929	5719872,5726310	0.975758
esophagus_squamous_epithelium_male_adult_37_years	chr3	193837449	193837483	193837470	-	High_confidence	29	30	111	5.256937	5.862645	chr3	193837444	193837604	LTR|ERVL-MaLR|MLT1N2	+	chr3	193823984	193837468	STRG.23689.3	-	193823984	193837468	0.990991
esophagus_squamous_epithelium_male_adult_37_years	chr11	123061207	123061323	123061277	-	High_confidence	18	20	186	8.808922	5.620881	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.967742
esophagus_squamous_epithelium_male_adult_37_years	chrX	16712861	16712900	16712889	-	High_confidence	9	9	23	1.089275	3.725651	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.869565
esophagus_squamous_epithelium_male_adult_37_years	chr2	233691673	233691710	233691709	+	RAMPAGE_only	89	96	336	15.912891	7.381564	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233692865	233773305	UGT1A6|NM_001072.3	+	233692865,233767033,233767848,233768219,233772261	233693865,233767165,233767936,233768439,233773305	0.517857
esophagus_squamous_epithelium_male_adult_37_years	chr5	67646708	67646746	67646708	-	High_confidence	9	9	27	1.278714	4.384517	chr5	67646558	67646761	SINE|MIR|MIRc	-	chr5	67627129	67646825	STRG.30083.2	-	67627129,67634306,67646605	67633335,67634395,67646825	0.629630
esophagus_squamous_epithelium_male_adult_37_years	chr2	201790489	201790517	201790506	+	High_confidence	24	24	64	3.031027	5.064499	chr2	201790433	201790802	LINE|L2|L2-3_Crp	-	chr2	201790471	201807938	CDK15|ENST00000493754.5	+	201790471,201806428,201807493,201807852	201790660,201806547,201807643,201807938	0.515625
esophagus_squamous_epithelium_male_adult_37_years	chr5	139364647	139364666	139364647	+	RAMPAGE_only	3	3	10	0.473598	3.321928	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chrX	151971286	151971310	151971309	-	RAMPAGE_only	3	3	7	0.331519	2.807355	chrX	151971131	151971345	LINE|L1|L1ME3A	+	chrX	151955396	151974664	STRG.95567.3	-	151955396,151955707,151959838,151962422,151969668,151970184,151971139	151955567,151959149,151961365,151962643,151969736,151970402,151974664	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr16	10532038	10532142	10532117	-	RAMPAGE_only	7	8	49	2.320630	4.237649	chr16	10532094	10532204	DNA|hAT-Charlie|MER5A	-	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.979592
esophagus_squamous_epithelium_male_adult_37_years	chr11	71999605	71999608	71999605	+	High_confidence	4	4	10	0.473598	2.921928	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999600	72002697	IL18BP|ENST00000534583.5	+	71999600,72000350,72001200,72001404,72001783,72002552	72000012,72000557,72001324,72001552,72001948,72002697	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr9	73113654	73113696	73113665	-	High_confidence	5	7	23	1.089275	4.055958	chr9	73113574	73113872	SINE|Alu|AluJo	-	chr9	73090378	73113933	STRG.50819.2	-	73090378,73090628,73111793,73112238	73090567,73091997,73111906,73113933	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr6	144533090	144533106	144533105	+	RAMPAGE_only	4	4	9	0.426238	3.000000	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144330819	144549116	STRG.38857.2	+	144330819,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639	144331018,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144549116	0.777778
esophagus_squamous_epithelium_male_adult_37_years	chr20	33812325	33812339	33812325	-	High_confidence	11	12	29	1.373434	4.458591	chr20	33812158	33812326	SINE|MIR|MIR3	+	chr20	33787502	33812120	STRG.87933.1	-	33787502,33795513,33797917,33812062	33787777,33795616,33797995,33812120	0.551724
esophagus_squamous_epithelium_male_adult_37_years	chr3	14047155	14047156	14047155	-	High_confidence	71	71	88	4.167662	5.116987	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14037448	14047189	STRG.17385.1	-	14037448,14046812	14041628,14047189	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr4	81154143	81154167	81154162	-	High_confidence	3	3	12	0.568318	3.459432	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81087369	81154157	PRKG2|NM_001282480.1	-	81087369,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153429,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153555,81153721,81154157	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr1	147172992	147172997	147172996	+	High_confidence	3	3	8	0.378878	3.000000	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chrX	48683361	48683363	48683362	+	High_confidence	34	68	68	3.220466	4.797042	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr1	110897856	110897878	110897859	+	RAMPAGE_only	2	4	13	0.615677	3.251629	chr1	110897898	110898002	SINE|MIR|MIR	+	chr1	110894308	110899851	CD53|ENST00000497404.1	+	110894308,110894959,110899123	110894401,110895055,110899851	0.923077
esophagus_squamous_epithelium_male_adult_37_years	chr5	90929239	90929258	90929239	+	High_confidence	2	2	9	0.426238	2.750000	chr5	90923630	90929658	LINE|L1|L1PA2	-	chr5	90929526	91072579	ADGRV1|ENST00000639707.1	+	90929526,90965414,90985343,91072446	90929661,90965531,90985522,91072579	0.555556
esophagus_squamous_epithelium_male_adult_37_years	chr2	9422817	9422818	9422817	-	High_confidence	5	6	7	0.331519	2.521641	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NM_001319068.1	-	9405680,9407448,9408112,9412268,9414177,9418625,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9422660	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr10	75140577	75140593	75140577	+	RAMPAGE_only	6	6	30	1.420794	4.521641	chr10	75140501	75140676	LTR|ERVL-MaLR|MLT1E3	+	chr10	75111708	75182123	SAMD8|ENST00000372687.4	+	75111708,75150513,75164644,75168540,75176065	75111778,75151106,75164740,75168658,75182123	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr19	51795141	51795163	51795150	+	High_confidence	8	8	30	1.420794	4.348394	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795145	51826190	FPR3|NM_002030.4	+	51795145,51823738	51795331,51826190	0.866667
esophagus_squamous_epithelium_male_adult_37_years	chr5	52745599	52745610	52745608	-	RAMPAGE_only	4	8	13	0.615677	3.084963	chr5	52745284	52745728	LTR|ERVL|MLT2A1	-	chr5	52675192	52788026	AC022126.1|ENST00000502995.1	-	52675192,52685604,52785534,52787917	52675532,52685690,52785592,52788026	0.615385
esophagus_squamous_epithelium_male_adult_37_years	chr3	9973627	9973648	9973632	-	RAMPAGE_only	3	3	11	0.520958	3.121928	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.909091
esophagus_squamous_epithelium_male_adult_37_years	chr18	36805392	36805429	36805392	-	RAMPAGE_only	2	2	7	0.331519	2.807355	chr18	36805277	36805349	LINE|L2|L2b	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr18	9588109	9588121	9588120	-	RAMPAGE_only	5	5	9	0.426238	3.000000	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9577063	9595061	STRG.81764.6	-	9577063,9584514,9584720,9588088,9588710,9593767,9595017	9583275,9584580,9584828,9588235,9588853,9593874,9595061	0.777778
esophagus_squamous_epithelium_male_adult_37_years	chr10	27509890	27509918	27509898	+	RAMPAGE_only	4	4	10	0.473598	2.846439	chr10	27509948	27510212	LINE|L2|L2c	+	chr10	27504618	27537966	RAB18|ENST00000423465.1	+	27504618,27504978,27509874,27526827,27531528,27532506,27533734,27533927,27537875	27504724,27505190,27509930,27526889,27531615,27532579,27533853,27533994,27537966	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr17	4143196	4143215	4143199	+	High_confidence	74	77	176	8.335324	5.893196	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.960227
esophagus_squamous_epithelium_male_adult_37_years	chr5	32403108	32403165	32403108	-	RAMPAGE_only	4	4	23	1.089275	3.880180	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.913043
esophagus_squamous_epithelium_male_adult_37_years	chr21	13893266	13893293	13893292	-	RAMPAGE_only	5	6	9	0.426238	3.000000	chr21	13891692	13893290	LTR|ERVL-MaLR|MSTA-int	-	chr21	13846758	13906488	STRG.89033.19	-	13846758,13848089,13865636,13891064	13847730,13865504,13871507,13906488	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr7	87040212	87040223	87040222	-	High_confidence	10	11	20	0.947196	4.247928	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.550000
esophagus_squamous_epithelium_male_adult_37_years	chr14	21360429	21360473	21360437	-	RAMPAGE_only	3	3	11	0.520958	3.277613	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351478	21358402	SUPT16H|ENST00000557394.5	-	21351478,21353487,21353702,21354410,21357196,21357926	21352818,21353565,21353832,21354540,21357366,21358402	0.818182
esophagus_squamous_epithelium_male_adult_37_years	chr2	113119406	113119471	113119443	+	RAMPAGE_only	5	7	26	1.231355	4.315824	chr2	113119234	113119443	SINE|MIR|MIR	-	chr2	113117980	113133121	STRG.12598.4	+	113117980,113127688,113129575,113131044,113132655	113121618,113127740,113129664,113131157,113133121	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr3	37031633	37031646	37031645	+	RAMPAGE_only	15	15	36	1.704953	4.400432	chr3	37031587	37031713	SINE|MIR|MIRc	+	chr3	37025975	37050537	MLH1|ENST00000413740.1	+	37025975,37028783,37040185,37050485	37026007,37028932,37040294,37050537	0.638889
esophagus_squamous_epithelium_male_adult_37_years	chr19	5680240	5680249	5680248	-	High_confidence	9	9	29	1.373434	4.384517	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.931034
esophagus_squamous_epithelium_male_adult_37_years	chr5	131316079	131316102	131316079	+	High_confidence	3	3	6	0.284159	2.584963	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131315451	131394667	STRG.32201.6	+	131315451,131359208,131385542,131390992,131391828	131316144,131359547,131385644,131391108,131394667	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr14	80225829	80225851	80225829	-	RAMPAGE_only	4	4	11	0.520958	2.846439	chr14	80225246	80230830	LTR|ERVL|HERVL-int	-	chr14	80202818	80231054	STRG.70880.5	-	80202818,80206230,80211250,80215971	80203288,80206338,80211525,80231054	0.909091
esophagus_squamous_epithelium_male_adult_37_years	chr1	162781425	162781504	162781503	+	RAMPAGE_only	3	3	26	1.231355	3.653661	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.961538
esophagus_squamous_epithelium_male_adult_37_years	chr18	63587246	63587257	63587246	+	High_confidence	16	16	27	1.278714	4.163856	chr18	63587176	63587346	DNA|hAT-Charlie|MER5B	-	chr18	63587299	63599198	SERPINB13|ENST00000269489.9	+	63587299,63588650,63589655,63592347,63592853,63594354,63595028,63596958	63587450,63588832,63589742,63592476,63592971,63594497,63595184,63599198	0.703704
esophagus_squamous_epithelium_male_adult_37_years	chr2	71050173	71050221	71050202	+	RAMPAGE_only	5	7	26	1.231355	3.639080	chr2	71048568	71050605	LTR|ERV1|HERVE-int	+	chr2	71055526	71056003	OR7E62P|ENST00000456741.1	+	71055526	71056003	0.807692
esophagus_squamous_epithelium_male_adult_37_years	chr3	189121283	189121299	189121294	+	RAMPAGE_only	5	5	15	0.710397	3.189898	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.733333
esophagus_squamous_epithelium_male_adult_37_years	chr16	2757786	2757815	2757786	+	High_confidence	5	5	22	1.041915	3.880180	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.863636
esophagus_squamous_epithelium_male_adult_37_years	chr9	89479889	89479890	89479889	-	High_confidence	77	78	79	3.741424	4.267911	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	0.962025
esophagus_squamous_epithelium_male_adult_37_years	chr14	81427438	81427467	81427438	-	High_confidence	4	4	20	0.947196	3.884184	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr1	196715644	196715669	196715668	+	RAMPAGE_only	5	6	17	0.805116	3.499228	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr20	50130105	50130128	50130127	-	RAMPAGE_only	3	4	13	0.615677	3.546594	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr8	56582878	56582879	56582878	+	RAMPAGE_only	44	44	49	2.320630	4.436605	chr8	56582691	56583072	LTR|ERVL-MaLR|MSTA	+	chr8	56588384	56588787	RPL37P6|ENST00000464216.1	+	56588384	56588787	0.938776
esophagus_squamous_epithelium_male_adult_37_years	chr12	12927723	12927741	12927733	+	High_confidence	123	123	249	11.792589	7.083420	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.526104
esophagus_squamous_epithelium_male_adult_37_years	chr5	67646675	67646676	67646675	-	High_confidence	9	9	11	0.520958	3.277613	chr5	67646558	67646761	SINE|MIR|MIRc	-	chr5	67627129	67646825	STRG.30083.2	-	67627129,67634306,67646605	67633335,67634395,67646825	0.727273
esophagus_squamous_epithelium_male_adult_37_years	chr7	158740251	158740281	158740280	-	RAMPAGE_only	13	14	47	2.225910	4.860238	chr7	158740209	158740388	LTR|ERV1|MER49	+	chr7	158733612	158744217	ESYT2|ENST00000435514.3	-	158733612,158734421,158735502,158737047,158739022,158741522,158743528	158734252,158734471,158735608,158737179,158739121,158741896,158744217	0.617021
esophagus_squamous_epithelium_male_adult_37_years	chr21	13889981	13889982	13889981	-	RAMPAGE_only	8	8	9	0.426238	2.750000	chr21	13888588	13890121	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13972129	STRG.89033.1	-	13843069,13845004,13846012,13846758,13879023,13887522,13900823,13907889,13909573,13910495,13911717,13915186,13916746,13917554,13925163,13932227,13939245,13940814,13945038,13951066,13951231,13954065,13969972	13844135,13845274,13846141,13859703,13879217,13891064,13907736,13908028,13909693,13910549,13911763,13915409,13916958,13917836,13925293,13938067,13939428,13940978,13945109,13951139,13951260,13967436,13972129	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr9	73158164	73158182	73158175	+	High_confidence	5	8	20	0.947196	3.616349	chr9	73158106	73158195	LINE|L2|L2c	+	chr9	73157653	73170393	ANXA1|ENST00000376911.1	+	73157653,73158694,73159328,73160262,73160802,73162781,73163475,73165115,73166096,73167496,73169031,73170050	73158601,73158803,73159423,73160376,73160893,73162861,73163532,73165209,73166192,73167555,73169154,73170393	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr7	135706450	135706457	135706456	-	RAMPAGE_only	4	4	8	0.378878	2.807355	chr7	135706429	135706508	LINE|L2|L2c	+	chr7	135681236	135728186	SLC13A4|ENST00000354042.8	-	135681236,135684123,135685521,135691200,135691547,135692322,135694136,135695367,135699363,135701679,135702844,135705595,135706127,135708113,135721394,135727397	135681700,135684261,135685683,135691325,135691645,135692424,135694238,135695487,135699548,135701760,135702881,135705650,135706300,135708250,135721523,135728186	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chrX	5726386	5726387	5726386	-	High_confidence	6	6	9	0.426238	2.750000	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5718745	5726310	STRG.91976.1	-	5718745,5725929	5719872,5726310	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr10	103746765	103746827	103746765	+	High_confidence	15	23	112	5.304297	6.077457	chr10	103746609	103747070	LINE|L2|L2b	+	chr10	103746778	103755409	SH3PXD2A-AS1|NR_038940.1	+	103746778,103749781,103753843	103747096,103749920,103755409	0.830357
esophagus_squamous_epithelium_male_adult_37_years	chr19	9700673	9700674	9700673	-	High_confidence	38	43	46	2.178550	4.337220	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.760870
esophagus_squamous_epithelium_male_adult_37_years	chr8	81590111	81590170	81590169	-	RAMPAGE_only	7	7	58	2.746868	5.211261	chr8	81589985	81590374	DNA|hAT-Charlie|Charlie14a	+	chr8	81524980	81531378	FABP12|ENST00000360464.4	-	81524980,81527019,81529437,81531242	81525120,81527121,81529610,81531378	0.758621
esophagus_squamous_epithelium_male_adult_37_years	chr6	169654674	169654732	169654701	-	RAMPAGE_only	9	10	39	1.847032	4.777021	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169457211	169656224	STRG.39872.3	-	169457211,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197,169651929	169457634,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649275,169656224	0.846154
esophagus_squamous_epithelium_male_adult_37_years	chr4	68231862	68231954	68231917	-	RAMPAGE_only	9	9	33	1.562873	4.631616	chr4	68231843	68231989	SINE|Alu|FAM	+	chr4	68226652	68245691	STRG.25720.2	-	68226652,68227873,68228741,68229256,68231202,68234462,68236001,68236150,68241688,68245550	68227061,68228072,68228884,68229516,68232416,68234623,68236069,68236266,68241804,68245691	0.939394
esophagus_squamous_epithelium_male_adult_37_years	chr21	13857468	13857512	13857511	-	RAMPAGE_only	5	5	32	1.515513	4.640224	chr21	13856776	13857518	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13885087	STRG.89033.17	-	13843069,13845004,13846012,13846758,13865636	13844135,13845274,13846141,13865504,13885087	0.937500
esophagus_squamous_epithelium_male_adult_37_years	chr7	87039782	87039798	87039796	-	High_confidence	2	5	8	0.378878	2.500000	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.625000
esophagus_squamous_epithelium_male_adult_37_years	chr9	111284874	111284875	111284874	-	High_confidence	11	13	13	0.615677	3.084963	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.769231
esophagus_squamous_epithelium_male_adult_37_years	chr15	80059915	80059926	80059918	+	High_confidence	173	206	414	19.606954	5.437484	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.971014
esophagus_squamous_epithelium_male_adult_37_years	chr16	68833979	68834020	68834019	+	RAMPAGE_only	2	2	9	0.426238	2.500000	chr16	68833960	68834253	SINE|Alu|AluJb	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr4	142474348	142474408	142474407	-	High_confidence	41	42	61	2.888947	5.369022	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.737705
esophagus_squamous_epithelium_male_adult_37_years	chrX	107155879	107155883	107155879	-	RAMPAGE_only	3	3	7	0.331519	2.584963	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr18	46087042	46087066	46087042	-	High_confidence	4	4	13	0.615677	3.546594	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.923077
esophagus_squamous_epithelium_male_adult_37_years	chr21	13860956	13860988	13860987	-	RAMPAGE_only	5	5	22	1.041915	4.061482	chr21	13859698	13861012	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13885087	STRG.89033.17	-	13843069,13845004,13846012,13846758,13865636	13844135,13845274,13846141,13865504,13885087	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr3	145698358	145698416	145698415	-	High_confidence	184	184	338	16.007610	6.408228	chr3	145698414	145698729	LTR|ERVL-MaLR|MLT1A0	+	chr3	145624866	145698410	STRG.22029.2	-	145624866,145645150,145650517,145681175,145698190	145625666,145645407,145650750,145681351,145698410	0.852071
esophagus_squamous_epithelium_male_adult_37_years	chr20	34369409	34369439	34369420	+	RAMPAGE_only	4	4	22	1.041915	3.880180	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.954545
esophagus_squamous_epithelium_male_adult_37_years	chr11	122322349	122322394	122322389	-	RAMPAGE_only	5	5	24	1.136635	4.262692	chr11	122322142	122322989	LINE|L2|L2c	+	chr11	122089195	122309451	MIR100HG|ENST00000648734.1	-	122089195,122155550,122180335,122202763,122292283,122309249	122091719,122155632,122180398,122202909,122292403,122309451	0.541667
esophagus_squamous_epithelium_male_adult_37_years	chr22	50757022	50757042	50757022	+	High_confidence	3	3	7	0.331519	2.807355	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr5	151687233	151687251	151687244	-	High_confidence	3	3	13	0.615677	3.584963	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.923077
esophagus_squamous_epithelium_male_adult_37_years	chr16	15798664	15798686	15798664	-	RAMPAGE_only	45	57	118	5.588456	5.851359	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.906780
esophagus_squamous_epithelium_male_adult_37_years	chr11	3477055	3477079	3477067	-	High_confidence	48	49	266	12.597705	5.441848	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3475562	3477063	STRG.57284.1	-	3475562,3476942	3476373,3477063	0.906015
esophagus_squamous_epithelium_male_adult_37_years	chr1	166850052	166850131	166850130	+	RAMPAGE_only	3	3	14	0.663037	3.807355	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr10	133523673	133523798	133523673	-	High_confidence	32	34	154	7.293408	6.644652	chr10	133523363	133523706	LINE|L1|L1ME3G	+	chr10	133504649	133523786	STRG.56947.4	-	133504649,133514219,133523609	133509289,133514328,133523786	0.506494
esophagus_squamous_epithelium_male_adult_37_years	chr5	117454948	117454966	117454949	+	High_confidence	19	33	59	2.794228	5.335784	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.796610
esophagus_squamous_epithelium_male_adult_37_years	chr20	3795750	3795789	3795750	+	High_confidence	6	6	31	1.468154	4.651084	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.935484
esophagus_squamous_epithelium_male_adult_37_years	chr2	215978460	215978496	215978480	-	RAMPAGE_only	12	12	26	1.231355	4.220176	chr2	215976650	215978919	LINE|L1|L1P2	+	chr2	215942804	216013613	MREG|ENST00000620139.4	-	215942804,215944110,215945570,215947022,215996305,216013232	215943739,215944997,215945734,215947113,215996465,216013613	0.769231
esophagus_squamous_epithelium_male_adult_37_years	chrX	53546444	53546454	53546444	-	RAMPAGE_only	3	3	8	0.378878	2.807355	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr19	7642301	7642316	7642301	+	High_confidence	3	3	11	0.520958	2.721928	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.727273
esophagus_squamous_epithelium_male_adult_37_years	chr21	13845233	13845254	13845233	-	RAMPAGE_only	1	1	7	0.331519	2.584963	chr21	13845162	13845380	SINE|MIR|MIR	+	chr21	13843132	13848364	CYP4F29P|ENST00000428301.1	-	13843132,13844021,13845004,13846012,13846758,13848089	13843432,13844135,13845274,13846141,13846949,13848364	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr11	65431761	65432065	65432064	+	RAMPAGE_only	11	11	178	8.430043	6.278034	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr14	51393871	51393872	51393871	-	RAMPAGE_only	4	4	7	0.331519	2.807355	chr14	51393678	51394061	LTR|ERVL-MaLR|MLT1B	-	chr14	51392127	51397135	LINC02310|ENST00000556762.1	-	51392127,51392967,51393459,51396999	51392331,51393049,51393609,51397135	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr11	119046564	119046592	119046586	-	RAMPAGE_only	2	3	9	0.426238	2.750000	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119044191	119048416	STRG.61008.8	-	119044191,119045780,119046416,119046561,119047733,119047946,119048247	119045654,119045834,119046467,119046802,119047818,119048080,119048416	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr12	85702901	85702906	85702901	+	High_confidence	4	4	9	0.426238	2.641604	chr12	85702699	85703083	LTR|ERVL-MaLR|THE1D	+	chr12	85702920	85709108	STRG.64722.1	+	85702920,85708093	85703004,85709108	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr15	41278801	41278887	41278886	+	RAMPAGE_only	6	6	38	1.799672	4.306495	chr15	41278930	41279226	SINE|Alu|AluSg	+	chr15	41231238	41281887	CHP1|NM_007236.4	+	41231238,41243666,41256909,41262755,41270556,41278766,41279335	41231449,41243739,41256990,41262883,41270618,41278889,41281887	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr3	11225985	11225995	11225985	+	High_confidence	2	2	6	0.284159	2.584963	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr15	88635643	88635661	88635654	+	High_confidence	16	16	41	1.941752	4.967308	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.829268
esophagus_squamous_epithelium_male_adult_37_years	chr21	13971501	13971664	13971630	-	High_confidence	12	15	92	4.357101	4.713157	chr21	13971518	13971690	LINE|L2|L2c	+	chr21	13936992	13972129	STRG.89033.3	-	13936992,13939245,13940814,13945038,13951066,13951231,13954065,13967380,13969972	13938067,13939428,13940978,13945109,13951139,13951260,13962871,13967436,13972129	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr7	87039827	87039870	87039869	-	RAMPAGE_only	7	7	23	1.089275	4.106603	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.869565
esophagus_squamous_epithelium_male_adult_37_years	chr19	55069739	55069774	55069739	-	High_confidence	3	3	13	0.615677	3.700440	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55063900	55069531	RDH13|ENST00000587373.1	-	55063900,55069321	55064412,55069531	0.538462
esophagus_squamous_epithelium_male_adult_37_years	chr2	173533083	173533154	173533125	+	High_confidence	6	6	40	1.894392	5.037401	chr2	173527289	173533317	LINE|L1|L1PA3	-	chr2	173532865	173698971	STRG.14205.2	+	173532865,173697719	173533339,173698971	0.525000
esophagus_squamous_epithelium_male_adult_37_years	chr19	5852506	5852527	5852526	+	High_confidence	13	14	24	1.136635	3.715589	chr19	5852530	5852959	LTR|ERV1|HERVH-int	+	chr19	5852402	5858205	STRG.83719.1	+	5852402,5854560,5857615	5852673,5854662,5858205	0.916667
esophagus_squamous_epithelium_male_adult_37_years	chr1	166603680	166603727	166603710	+	High_confidence	12	12	56	2.652148	5.501505	chr1	166603525	166603837	SINE|Alu|AluSz	+	chr1	166603915	166625238	FMO9P|ENST00000477875.6	+	166603915,166604759,166612459,166620798,166621869,166623643,166624680	166603984,166604857,166612603,166620987,166622032,166623786,166625238	0.767857
esophagus_squamous_epithelium_male_adult_37_years	chr14	65285131	65285134	65285131	+	RAMPAGE_only	10	10	21	0.994556	4.084184	chr14	65284944	65285417	LTR|ERVL-MaLR|MLT1C	+	chr14	65410591	65744121	FUT8|NM_178156.2	+	65410591,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65411993,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65744121	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr16	63618044	63618046	63618045	-	High_confidence	74	99	109	5.162217	5.858647	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63305082	63618046	STRG.76948.2	-	63305082,63334599,63531224,63617692	63305420,63334667,63531304,63618046	0.660550
esophagus_squamous_epithelium_male_adult_37_years	chr9	121313980	121314023	121314020	+	RAMPAGE_only	43	44	195	9.235160	5.363177	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr15	42404760	42404776	42404760	+	High_confidence	2	3	8	0.378878	2.750000	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404778	42412315	CAPN3|ENST00000337571.8	+	42404778,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412315	0.625000
esophagus_squamous_epithelium_male_adult_37_years	chr17	28234007	28234048	28234030	-	RAMPAGE_only	4	4	16	0.757757	3.506891	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.937500
esophagus_squamous_epithelium_male_adult_37_years	chr19	20423697	20423704	20423703	-	RAMPAGE_only	16	25	45	2.131191	3.919120	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.777778
esophagus_squamous_epithelium_male_adult_37_years	chr1	202551736	202551744	202551736	+	RAMPAGE_only	3	3	9	0.426238	3.169925	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.777778
esophagus_squamous_epithelium_male_adult_37_years	chr17	49646471	49646501	49646471	-	High_confidence	8	11	53	2.510069	4.195784	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.849057
esophagus_squamous_epithelium_male_adult_37_years	chr8	144106431	144106454	144106431	+	High_confidence	2	2	7	0.331519	2.807355	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr11	57793743	57793786	57793743	+	RAMPAGE_only	5	5	16	0.757757	3.640224	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57781602	57796584	CTNND1|ENST00000530068.5	+	57781602,57791491,57794009,57795576,57796456	57781646,57791673,57794081,57795729,57796584	0.687500
esophagus_squamous_epithelium_male_adult_37_years	chr12	22150368	22150380	22150368	-	RAMPAGE_only	12	12	28	1.326074	4.384517	chr12	22147464	22152713	LINE|L1|L1PA7	+	chr12	22107158	22118489	ST8SIA1|ENST00000537795.1	-	22107158,22118311	22107536,22118489	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr18	34709342	34709389	34709369	+	High_confidence	7	7	41	1.941752	4.587472	chr18	34709150	34709395	LINE|L2|L2c	-	chr18	34709355	34812056	DTNA|ENST00000585446.1	+	34709355,34794036,34806218,34811958	34709517,34794250,34806304,34812056	0.585366
esophagus_squamous_epithelium_male_adult_37_years	chr7	11192977	11192978	11192977	+	High_confidence	8	8	11	0.520958	3.095795	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.909091
esophagus_squamous_epithelium_male_adult_37_years	chr15	67166512	67166531	67166530	+	High_confidence	342	342	731	34.620009	4.978307	chr15	67166449	67166543	LINE|L2|L2b	-	chr15	67166530	67181420	SMAD3|ENST00000558428.5	+	67166530,67170553,67181240	67166853,67170604,67181420	0.953488
esophagus_squamous_epithelium_male_adult_37_years	chr10	65570512	65570522	65570521	+	High_confidence	18	27	57	2.699508	5.218512	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570535	65585775	LINC01515|ENST00000608678.5	+	65570535,65571424,65572934,65581611,65585484	65570759,65571579,65573056,65581673,65585775	0.526316
esophagus_squamous_epithelium_male_adult_37_years	chr8	127218869	127219039	127218878	-	High_confidence	81	81	592	28.036998	7.341421	chr8	127218788	127218864	SINE|MIR|MIR	-	chr8	127185606	127218925	CASC19|ENST00000641523.1	-	127185606,127187784,127188044,127202041,127203162,127208605,127208856,127218809	127185770,127187884,127188115,127202152,127203220,127208682,127209717,127218925	0.685811
esophagus_squamous_epithelium_male_adult_37_years	chr21	13898604	13898686	13898685	-	RAMPAGE_only	11	13	56	2.652148	4.374715	chr21	13898559	13899880	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13906488	STRG.89033.13	-	13843069,13844021,13845004,13846012,13846758,13865636,13894138	13843432,13844135,13845274,13846141,13865504,13874584,13906488	0.946429
esophagus_squamous_epithelium_male_adult_37_years	chr21	13890475	13890557	13890556	-	RAMPAGE_only	15	15	45	2.131191	4.297627	chr21	13890286	13890575	LTR|ERVL-MaLR|MSTA	-	chr21	13843069	13972129	STRG.89033.1	-	13843069,13845004,13846012,13846758,13879023,13887522,13900823,13907889,13909573,13910495,13911717,13915186,13916746,13917554,13925163,13932227,13939245,13940814,13945038,13951066,13951231,13954065,13969972	13844135,13845274,13846141,13859703,13879217,13891064,13907736,13908028,13909693,13910549,13911763,13915409,13916958,13917836,13925293,13938067,13939428,13940978,13945109,13951139,13951260,13967436,13972129	0.955556
esophagus_squamous_epithelium_male_adult_37_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	11	12	16	0.757757	3.906891	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.625000
esophagus_squamous_epithelium_male_adult_37_years	chr2	166185009	166185032	166185031	+	RAMPAGE_only	7	8	24	1.136635	4.523562	chr2	166184665	166185205	LINE|L2|L2a	-	chr2	166149180	166294588	AC010127.1|ENST00000630020.2	+	166149180,166171386,166199638,166248194,166249342,166251833,166277087,166294564	166149572,166171558,166199818,166248276,166249384,166251912,166277247,166294588	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr2	187529375	187529404	187529375	-	RAMPAGE_only	2	2	11	0.520958	3.321928	chr2	187529293	187529670	LTR|ERVL-MaLR|MLT1B	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.818182
esophagus_squamous_epithelium_male_adult_37_years	chr2	8783155	8783166	8783155	-	RAMPAGE_only	3	3	9	0.426238	2.947703	chr2	8782911	8783214	SINE|Alu|AluSq	+	chr2	8725559	8802971	KIDINS220|ENST00000496383.5	-	8725559,8726886,8733443,8734654,8736867,8750111,8751465,8770669,8776747,8778638,8778895,8779673,8785740,8786205,8788646,8789879,8791059,8793809,8796770,8798201,8800399,8802929	8725599,8726943,8733680,8734753,8736999,8750335,8751644,8770832,8776892,8778727,8779139,8779814,8786030,8786357,8788812,8790059,8791224,8793987,8796869,8798300,8800498,8802971	0.777778
esophagus_squamous_epithelium_male_adult_37_years	chr2	39909325	39909326	39909325	+	RAMPAGE_only	7	7	11	0.520958	3.095795	chr2	39909133	39909489	LTR|ERVL-MaLR|THE1D	+	chr2	39917633	40255209	SLC8A1-AS1|NR_038441.1	+	39917633,39922848,40104908,40251683,40254419	39917659,39922889,40104962,40251774,40255209	0.545455
esophagus_squamous_epithelium_male_adult_37_years	chr19	7515237	7515262	7515237	+	High_confidence	2	2	9	0.426238	3.000000	chr19	7514930	7515246	LTR|ERV1|MER90	-	chr19	7515291	7519751	ZNF358|ENST00000596712.1	+	7515291,7519204	7515406,7519751	0.777778
esophagus_squamous_epithelium_male_adult_37_years	chr6	118651579	118651605	118651579	-	High_confidence	3	3	17	0.805116	3.852169	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr15	52548793	52548882	52548828	-	RAMPAGE_only	9	10	40	1.894392	4.024857	chr15	52548772	52548988	DNA|TcMar-Tigger|MamRep434	-	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	0.975000
esophagus_squamous_epithelium_male_adult_37_years	chr5	65988639	65988682	65988681	+	High_confidence	5	5	12	0.568318	3.022055	chr5	65988722	65989005	SINE|Alu|AluJb	+	chr5	65988632	66078936	ERBIN|ENST00000508515.1	+	65988632,65992709,65994746,66012048,66013548,66014668,66021321,66023289,66024305,66025479,66025847,66026301,66028273,66038382,66043076,66044136,66046352,66048666,66050782,66053405,66076315,66076874,66078422	65988682,65992907,65994864,66012127,66013638,66014725,66021385,66023364,66024450,66025552,66025977,66026417,66028343,66038482,66043198,66044310,66046538,66048781,66050966,66054951,66076408,66076949,66078936	0.916667
esophagus_squamous_epithelium_male_adult_37_years	chr18	9117574	9117618	9117605	+	RAMPAGE_only	8	10	43	2.036471	4.786503	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	0.813953
esophagus_squamous_epithelium_male_adult_37_years	chr12	8681676	8681677	8681676	+	High_confidence	31	31	37	1.752312	4.627987	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.864865
esophagus_squamous_epithelium_male_adult_37_years	chr1	183130868	183130891	183130890	+	RAMPAGE_only	2	2	7	0.331519	2.521641	chr1	183130892	183131190	SINE|Alu|AluSp	+	chr1	183023459	183145592	LAMC1|NM_002293.3	+	183023459,183103327,183108275,183110487,183114530,183115519,183116576,183116766,183117319,183117533,183118033,183121722,183122062,183124630,183125396,183126119,183127225,183128593,183130343,183131298,183132399,183133405,183134659,183135041,183136385,183137668,183140403,183142533	183024134,183103632,183108406,183110654,183114719,183115637,183116675,183116903,183117442,183117723,183118146,183121944,183122251,183124876,183125550,183126262,183127404,183128750,183130549,183131378,183132537,183133550,183134809,183135156,183136585,183137827,183140503,183145592	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr21	13935479	13935595	13935520	-	RAMPAGE_only	4	6	38	1.799672	4.760067	chr21	13934252	13936999	Retroposon|SVA|SVA_A	-	chr21	13843069	13972129	STRG.89033.1	-	13843069,13845004,13846012,13846758,13879023,13887522,13900823,13907889,13909573,13910495,13911717,13915186,13916746,13917554,13925163,13932227,13939245,13940814,13945038,13951066,13951231,13954065,13969972	13844135,13845274,13846141,13859703,13879217,13891064,13907736,13908028,13909693,13910549,13911763,13915409,13916958,13917836,13925293,13938067,13939428,13940978,13945109,13951139,13951260,13967436,13972129	0.947368
esophagus_squamous_epithelium_male_adult_37_years	chr6	79631273	79631329	79631302	+	High_confidence	551	553	1698	80.416929	6.930401	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.982332
esophagus_squamous_epithelium_male_adult_37_years	chr19	54448601	54448602	54448601	+	High_confidence	6	6	7	0.331519	2.584963	chr19	54448651	54448966	SINE|Alu|AluSg	+	chr19	54448886	54462037	LENG8|ENST00000326764.9	+	54448886,54451289,54452092,54452650,54453545,54454429,54454950,54455363,54455966,54456324,54456635,54457746,54457933,54458102,54458313,54460765	54449310,54451382,54452267,54452752,54453656,54454682,54455092,54455567,54456245,54456465,54456921,54457848,54458002,54458232,54458521,54462037	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr4	128570452	128570488	128570487	-	High_confidence	10	10	29	1.373434	4.513153	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.965517
esophagus_squamous_epithelium_male_adult_37_years	chr19	51027569	51027668	51027667	-	High_confidence	109	114	876	41.487179	7.827914	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.715753
esophagus_squamous_epithelium_male_adult_37_years	chr3	30614615	30614635	30614634	+	RAMPAGE_only	5	6	10	0.473598	2.947703	chr3	30614618	30614848	SINE|MIR|MIR	-	chr3	30606600	30694142	TGFBR2|ENST00000359013.4	+	30606600,30623198,30644746,30650269,30671637,30674104,30688383,30691419	30606977,30623273,30644915,30650460,30672437,30674246,30688511,30694142	0.700000
esophagus_squamous_epithelium_male_adult_37_years	chr19	35164235	35164245	35164235	+	High_confidence	3	4	7	0.331519	2.584963	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr21	13954248	13954277	13954261	-	RAMPAGE_only	2	2	11	0.520958	3.321928	chr21	13954223	13954519	SINE|Alu|AluJo	-	chr21	13936992	13972129	STRG.89033.5	-	13936992,13939245,13940814,13943743,13945038,13951066,13951231,13954065,13969972	13938067,13939428,13940978,13943862,13945109,13951139,13951260,13967436,13972129	0.636364
esophagus_squamous_epithelium_male_adult_37_years	chr6	119831175	119831193	119831175	+	RAMPAGE_only	6	6	17	0.805116	3.690117	chr6	119829916	119831590	LINE|L1|L1PBa	-	chr6	119549807	119845084	LOC105377975|NR_134600.1	+	119549807,119550229,119843065,119844566	119549893,119550395,119843107,119845084	0.529412
esophagus_squamous_epithelium_male_adult_37_years	chr19	3136825	3136911	3136835	-	High_confidence	8	8	56	2.652148	4.905046	chr19	3136742	3136815	SINE|MIR|MIRc	-	chr19	3136436	3136914	STRG.83603.3	-	3136436	3136914	0.964286
esophagus_squamous_epithelium_male_adult_37_years	chr6	40867661	40867733	40867729	-	High_confidence	94	112	307	14.539457	6.308225	chr6	40861829	40868245	LTR|ERV1|HERVH-int	-	chr6	40854909	40867725	STRG.35767.1	-	40854909,40861326,40867389	40858753,40861478,40867725	0.941368
esophagus_squamous_epithelium_male_adult_37_years	chr11	65439448	65439504	65439466	+	RAMPAGE_only	8	8	26	1.231355	3.997953	chr11	65439400	65439684	SINE|Alu|AluSz6	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr11	307580	307581	307580	-	RAMPAGE_only	9	9	9	0.426238	3.169925	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	0.777778
esophagus_squamous_epithelium_male_adult_37_years	chr2	177234004	177234067	177234004	-	RAMPAGE_only	5	5	42	1.989111	4.560667	chr2	177233751	177233962	SINE|MIR|MIRc	-	chr2	177231713	177263567	NFE2L2|ENST00000448782.5	-	177231713,177232391,177233249,177234004,177263436	177232008,177232583,177233339,177234271,177263567	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr21	13934322	13934323	13934322	-	RAMPAGE_only	16	16	18	0.852476	3.616875	chr21	13934252	13936999	Retroposon|SVA|SVA_A	-	chr21	13843069	13972129	STRG.89033.1	-	13843069,13845004,13846012,13846758,13879023,13887522,13900823,13907889,13909573,13910495,13911717,13915186,13916746,13917554,13925163,13932227,13939245,13940814,13945038,13951066,13951231,13954065,13969972	13844135,13845274,13846141,13859703,13879217,13891064,13907736,13908028,13909693,13910549,13911763,13915409,13916958,13917836,13925293,13938067,13939428,13940978,13945109,13951139,13951260,13967436,13972129	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr18	35467080	35467099	35467080	-	High_confidence	4	4	8	0.378878	2.750000	chr18	35467057	35467118	DNA|hAT-Charlie|MER5A	-	chr18	35445742	35467081	AC007998.3|ENST00000591141.1	-	35445742,35446874,35466623	35445900,35446955,35467081	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr20	45833293	45833321	45833305	-	High_confidence	14	15	54	2.557429	4.146969	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45824322	45833286	STRG.88312.1	-	45824322,45824494,45824782,45833250	45824406,45824638,45824834,45833286	0.870370
esophagus_squamous_epithelium_male_adult_37_years	chr10	84172094	84172104	84172094	-	High_confidence	266	272	417	19.749034	7.083161	chr10	84171986	84172465	LTR|ERV1|LTR2B	-	chr10	84148390	84172093	STRG.55311.2	-	84148390,84171330	84171014,84172093	0.762590
esophagus_squamous_epithelium_male_adult_37_years	chr21	13845196	13845213	13845196	-	RAMPAGE_only	3	4	11	0.520958	3.121928	chr21	13845162	13845380	SINE|MIR|MIR	+	chr21	13843132	13848364	CYP4F29P|ENST00000428301.1	-	13843132,13844021,13845004,13846012,13846758,13848089	13843432,13844135,13845274,13846141,13846949,13848364	0.909091
esophagus_squamous_epithelium_male_adult_37_years	chr1	89371522	89371534	89371522	+	RAMPAGE_only	2	2	7	0.331519	2.584963	chr1	89371198	89373819	LINE|L1|L1PA5	+	chr1	89363890	89495697	STRG.3756.6	+	89363890,89368538,89369545,89495550	89364127,89368741,89372243,89495697	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr4	75127193	75127225	75127224	-	RAMPAGE_only	73	113	378	17.902002	5.878706	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.925926
esophagus_squamous_epithelium_male_adult_37_years	chr12	126772250	126772259	126772258	-	High_confidence	4	4	11	0.520958	3.459432	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126752340	126772262	LINC00944|ENST00000536517.1	-	126752340,126760931,126772078	126752451,126761057,126772262	0.727273
esophagus_squamous_epithelium_male_adult_37_years	chr4	98891320	98891330	98891329	-	High_confidence	5	7	15	0.710397	3.640224	chr4	98891322	98891802	LINE|L1|L1MB2	+	chr4	98881009	98890898	EIF4E|ENST00000505194.5	-	98881009,98884921,98887078,98887888,98890786	98881142,98885061,98887192,98887952,98890898	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr1	9894244	9894252	9894245	-	RAMPAGE_only	9	16	30	1.420794	4.418157	chr1	9894071	9894347	LINE|L1|L1MC4	-	chr1	9850449	9893237	CTNNBIP1|ENST00000377258.5	-	9850449,9871186,9871968,9877904,9893008	9850776,9871277,9872088,9877989,9893237	0.933333
esophagus_squamous_epithelium_male_adult_37_years	chr1	89386349	89386459	89386397	+	RAMPAGE_only	5	6	34	1.610233	4.094097	chr1	89385959	89386400	LINE|L1|L1ME4b	+	chr1	89363890	89429940	STRG.3756.1	+	89363890,89368528,89369545,89378102,89378416,89380385,89381693,89382663,89383651,89384092,89385229,89410299,89420190,89421080,89426129	89364127,89368741,89369673,89378212,89378613,89380631,89381974,89382876,89383754,89384286,89407758,89410508,89420318,89424451,89429940	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr1	174874395	174874441	174874418	+	RAMPAGE_only	14	16	42	1.989111	4.916127	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174877439	174995301	RABGAP1L|ENST00000392064.6	+	174877439,174957456,174969276,174976077,174978806,174982833,174988640,174989848	174877605,174957549,174969387,174976182,174978890,174982905,174988838,174995301	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr1	43120107	43120148	43120134	+	RAMPAGE_only	10	10	56	2.652148	5.367634	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43145152	43156396	FAM183A|ENST00000410048.5	+	43145152,43150760,43152827,43156205	43145297,43150820,43152931,43156396	0.642857
esophagus_squamous_epithelium_male_adult_37_years	chr9	122406522	122406537	122406522	+	RAMPAGE_only	10	10	21	0.994556	3.431624	chr9	122405232	122406719	LTR|ERV1|LTR12C	-	chr9	122403406	122448977	AL359636.1|ENST00000433572.2	+	122403406,122404671,122415713,122416767,122447428,122448929	122403456,122404791,122415782,122416885,122447545,122448977	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr18	30991765	30991920	30991809	-	RAMPAGE_only	10	10	90	4.262381	5.524373	chr18	30991406	30991833	LTR|ERV1|MER65C	-	chr18	30990007	31042741	DSC3|ENST00000360428.8	-	30990007,30996790,31001617,31004141,31006906,31008015,31008268,31018070,31018665,31022335,31024348,31025759,31029508,31030972,31032191,31042591	30994372,30997048,31001739,31004366,31007131,31008158,31008525,31018256,31018800,31022502,31024493,31025915,31029628,31031172,31032276,31042741	0.988889
esophagus_squamous_epithelium_male_adult_37_years	chr19	49086519	49086547	49086526	+	High_confidence	6	6	19	0.899836	3.683542	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.736842
esophagus_squamous_epithelium_male_adult_37_years	chr16	66408519	66408539	66408538	+	High_confidence	3	3	8	0.378878	2.521641	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr20	48192316	48192322	48192321	+	High_confidence	221	223	344	16.291769	7.317412	chr20	48191876	48192430	LTR|ERVL-MaLR|MLT1K	-	chr20	48192331	48203726	STRG.88409.1	+	48192331,48192893,48202827	48192490,48195439,48203726	0.770349
esophagus_squamous_epithelium_male_adult_37_years	chr3	69237171	69237186	69237182	-	RAMPAGE_only	29	36	179	8.477403	6.507743	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.519553
esophagus_squamous_epithelium_male_adult_37_years	chr6	3083251	3083297	3083257	+	RAMPAGE_only	4	4	13	0.615677	3.026987	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.846154
esophagus_squamous_epithelium_male_adult_37_years	chr16	72627651	72627705	72627661	-	RAMPAGE_only	10	12	59	2.794228	5.477370	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.525424
esophagus_squamous_epithelium_male_adult_37_years	chr1	17260027	17260048	17260027	+	RAMPAGE_only	2	3	7	0.331519	2.807355	chr1	17259848	17260031	SINE|MIR|MIR	+	chr1	17257385	17284233	STRG.779.4	+	17257385,17259577,17265658,17266718,17267836,17270232,17270878,17271066,17273339,17274634,17276518,17276773,17280349,17280670,17282845	17258998,17262205,17265720,17266836,17267962,17270411,17270982,17271178,17273447,17274786,17276663,17276876,17280429,17280796,17284233	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr12	104030726	104030727	104030726	+	High_confidence	31	31	40	1.894392	4.787144	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.800000
esophagus_squamous_epithelium_male_adult_37_years	chr2	113117970	113117976	113117970	+	High_confidence	8424	10531	15711	744.069713	7.608508	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117980	113133121	STRG.12598.4	+	113117980,113127688,113129575,113131044,113132655	113121618,113127740,113129664,113131157,113133121	0.941761
esophagus_squamous_epithelium_male_adult_37_years	chr4	83190807	83190876	83190807	+	High_confidence	2	3	15	0.710397	3.521641	chr4	83190220	83190821	LTR|ERV1|MER39	-	chr4	83190879	83191231	STRG.26176.1	+	83190879	83191231	0.600000
esophagus_squamous_epithelium_male_adult_37_years	chr19	45450738	45450766	45450765	-	High_confidence	6	6	25	1.183995	4.334963	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.680000
esophagus_squamous_epithelium_male_adult_37_years	chr7	11193340	11193367	11193340	+	High_confidence	10	13	46	2.178550	3.999442	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.804348
esophagus_squamous_epithelium_male_adult_37_years	chr19	46350849	46350851	46350849	+	RAMPAGE_only	9	11	15	0.710397	3.521641	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.866667
esophagus_squamous_epithelium_male_adult_37_years	chr16	20674497	20674498	20674497	+	High_confidence	11	12	15	0.710397	3.093069	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.733333
esophagus_squamous_epithelium_male_adult_37_years	chr2	240022172	240022226	240022172	-	RAMPAGE_only	7	7	33	1.562873	3.155854	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.939394
esophagus_squamous_epithelium_male_adult_37_years	chr17	69325777	69325800	69325777	-	RAMPAGE_only	2	2	10	0.473598	2.947703	chr17	69325641	69325831	SINE|Alu|AluJo	+	chr17	69306762	69327090	ABCA5|ENST00000587607.5	-	69306762,69308279,69309261,69313091,69314313,69327051	69306954,69308368,69309423,69313296,69314430,69327090	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr8	2119299	2119300	2119299	+	High_confidence	7	7	9	0.426238	2.500000	chr8	2119298	2119410	LINE|L2|L2c	-	chr8	2119257	2140826	MYOM2|ENST00000519631.5	+	2119257,2123251,2123554,2124178,2129126,2140722	2119451,2123365,2123642,2124217,2129232,2140826	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr19	46203082	46203083	46203082	-	High_confidence	404	416	442	20.933029	5.216901	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.791855
esophagus_squamous_epithelium_male_adult_37_years	chr12	14665612	14665636	14665635	+	High_confidence	11	13	39	1.847032	4.534259	chr12	14665652	14665749	LINE|L2|L2a	+	chr12	14665627	14718126	STRG.62336.1	+	14665627,14665858,14668024,14672265,14718034	14665697,14666013,14668146,14672314,14718126	0.871795
esophagus_squamous_epithelium_male_adult_37_years	chr21	13863421	13863444	13863443	-	RAMPAGE_only	3	3	12	0.568318	2.594907	chr21	13862510	13863665	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13885087	STRG.89033.17	-	13843069,13845004,13846012,13846758,13865636	13844135,13845274,13846141,13865504,13885087	0.916667
esophagus_squamous_epithelium_male_adult_37_years	chr21	13934847	13935037	13934955	-	RAMPAGE_only	37	38	313	14.823615	5.024007	chr21	13934252	13936999	Retroposon|SVA|SVA_A	-	chr21	13843069	13972129	STRG.89033.1	-	13843069,13845004,13846012,13846758,13879023,13887522,13900823,13907889,13909573,13910495,13911717,13915186,13916746,13917554,13925163,13932227,13939245,13940814,13945038,13951066,13951231,13954065,13969972	13844135,13845274,13846141,13859703,13879217,13891064,13907736,13908028,13909693,13910549,13911763,13915409,13916958,13917836,13925293,13938067,13939428,13940978,13945109,13951139,13951260,13967436,13972129	0.993610
esophagus_squamous_epithelium_male_adult_37_years	chr5	140700445	140700452	140700445	+	High_confidence	1108	1343	2266	107.317292	5.002466	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.987643
esophagus_squamous_epithelium_male_adult_37_years	chr7	44068041	44068083	44068063	+	RAMPAGE_only	2	2	9	0.426238	2.750000	chr7	44067879	44068408	LINE|L1|L1ME1	+	chr7	44065004	44071725	STRG.41681.21	+	44065004	44071725	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr8	56559496	56559497	56559496	-	High_confidence	60	62	78	3.694064	5.891109	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56496245	56559586	LINC00968|ENST00000519144.5	-	56496245,56520120,56559557	56496333,56520567,56559586	0.576923
esophagus_squamous_epithelium_male_adult_37_years	chr8	18063197	18063216	18063197	-	High_confidence	3	3	10	0.473598	3.321928	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr1	154975505	154975530	154975524	+	High_confidence	4	4	18	0.852476	3.807764	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr9	62376606	62376633	62376628	+	High_confidence	3	3	14	0.663037	3.392747	chr9	62376600	62376639	SINE|MIR|MIRb	+	chr9	62376516	62434385	FGF7P6|ENST00000452826.2	+	62376516,62432875	62376813,62434385	0.928571
esophagus_squamous_epithelium_male_adult_37_years	chr1	195722378	195722382	195722381	-	High_confidence	1020	1023	1615	76.486066	5.962500	chr1	195721970	195723453	LTR|ERV1|LTR12C	-	chr1	195573828	195722385	STRG.6874.2	-	195573828,195690604,195721819	195574805,195690765,195722385	0.947368
esophagus_squamous_epithelium_male_adult_37_years	chr5	133583660	133583702	133583660	-	High_confidence	4	4	12	0.568318	3.251629	chr5	133583288	133589299	LINE|L1|L1HS	+	chr5	133316596	133583641	FSTL4|ENST00000510685.1	-	133316596,133400737,133567185,133583264	133316652,133400986,133567219,133583641	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr5	148310059	148310094	148310093	+	RAMPAGE_only	19	24	32	1.515513	4.116729	chr5	148310047	148310490	DNA|TcMar-Tigger|Tigger2a	+	chr5	148312422	148315922	SPINK7|ENST00000274565.4	+	148312422,148313373,148314099,148315638	148312544,148313399,148314224,148315922	0.968750
esophagus_squamous_epithelium_male_adult_37_years	chr10	34973959	34974007	34973980	+	High_confidence	14	14	110	5.209577	5.209941	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34973983	34975576	STRG.54260.2	+	34973983	34975576	0.990909
esophagus_squamous_epithelium_male_adult_37_years	chr14	101819779	101819799	101819781	+	RAMPAGE_only	4	6	12	0.568318	3.459432	chr14	101819651	101819923	SINE|Alu|AluJb	-	chr14	101761861	101821098	PPP2R5C|ENST00000556068.5	+	101761861,101762904,101786017,101818026	101761920,101762970,101786183,101821098	0.583333
esophagus_squamous_epithelium_male_adult_37_years	chr21	13902949	13902997	13902975	-	RAMPAGE_only	5	5	20	0.947196	3.892407	chr21	13901438	13903009	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13906488	STRG.89033.13	-	13843069,13844021,13845004,13846012,13846758,13865636,13894138	13843432,13844135,13845274,13846141,13865504,13874584,13906488	0.950000
esophagus_squamous_epithelium_male_adult_37_years	chr15	74350905	74350910	74350909	+	High_confidence	4	4	9	0.426238	2.750000	chr15	74350910	74352262	LTR|ERV1|MER51-int	+	chr15	74350767	74361903	PPIAP46|ENST00000564109.1	+	74350767,74354525,74356282,74361513	74350939,74354685,74356475,74361903	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr12	8285827	8285851	8285850	-	High_confidence	9	9	24	1.136635	4.053509	chr12	8282795	8290617	LTR|ERV1|HERVE-int	-	chr12	8284869	8285133	STRG.61933.1	-	8284869	8285133	0.958333
esophagus_squamous_epithelium_male_adult_37_years	chr1	78620056	78620057	78620056	+	High_confidence	7	8	8	0.378878	2.750000	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr1	45522855	45522859	45522858	-	High_confidence	233	233	365	17.286325	6.326244	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.983562
esophagus_squamous_epithelium_male_adult_37_years	chr21	13882977	13883051	13883046	-	RAMPAGE_only	3	3	13	0.615677	3.418296	chr21	13881831	13883382	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13885087	STRG.89033.17	-	13843069,13845004,13846012,13846758,13865636	13844135,13845274,13846141,13865504,13885087	0.923077
esophagus_squamous_epithelium_male_adult_37_years	chr7	11194708	11194730	11194708	+	High_confidence	33	36	72	3.409905	4.666645	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11194715	11252842	STRG.40354.2	+	11194715,11197309,11244257,11248292,11250958	11194784,11197444,11244479,11248375,11252842	0.680556
esophagus_squamous_epithelium_male_adult_37_years	chr10	80344732	80344733	80344732	+	High_confidence	7	7	7	0.331519	2.807355	chr10	80344537	80344891	LTR|ERVL-MaLR|THE1A	+	chr10	80344744	80368073	DYDC2|NR_070308.1	+	80344744,80352436,80356259,80362434,80362950,80366687	80344815,80352617,80356596,80362590,80363073,80368073	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr2	3536476	3536501	3536476	-	High_confidence	2	2	9	0.426238	2.500000	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr12	31121337	31121338	31121337	-	RAMPAGE_only	17	19	21	0.994556	3.471354	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr17	56904421	56904435	56904421	-	High_confidence	2	2	8	0.378878	2.807355	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr10	95437815	95437820	95437815	-	RAMPAGE_only	6	6	10	0.473598	2.947703	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.600000
esophagus_squamous_epithelium_male_adult_37_years	chr9	98943471	98943484	98943483	+	High_confidence	3	4	6	0.284159	2.584963	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr6	113649562	113649566	113649562	-	High_confidence	2	2	7	0.331519	2.521641	chr6	113649538	113649782	SINE|MIR|MIRc	-	chr6	113616926	113650090	LINC02541|ENST00000649523.1	-	113616926,113622880,113623170,113623739,113627520,113649403,113650014	113617423,113623054,113623646,113623822,113627675,113649821,113650090	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr5	126594172	126594173	126594172	-	High_confidence	4	5	7	0.331519	2.584963	chr5	126594110	126594228	LINE|L2|L2b	-	chr5	126568039	126594318	ALDH7A1|ENST00000511266.6	-	126568039,126570781,126575419,126577078,126582850,126583931,126592663,126593350	126568356,126570859,126575464,126577211,126582974,126584012,126592729,126594318	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr15	71972206	71972207	71972206	+	High_confidence	7	7	7	0.331519	2.521641	chr15	71971811	71972688	LTR|ERVL|MER21A	+	chr15	71972205	72040265	AC022872.1|ENST00000568391.1	+	71972205,71993692,71999012,72036514,72039935	71972317,71993788,71999080,72036689,72040265	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr14	39265951	39265971	39265954	+	High_confidence	10	11	37	1.752312	4.386426	chr14	39265902	39265967	LINE|RTE-BovB|MamRTE1	+	chr14	39265967	39350423	MIA2|ENST00000396165.8	+	39265967,39276933,39279336,39279448,39291018,39293270,39293999,39294924,39299863,39302128,39303477,39304290,39308448,39313339,39314738,39315682,39317943,39319208,39320927,39326863,39345903,39347712,39348742,39350097	39266527,39277065,39279358,39279537,39291096,39293381,39294071,39295029,39299986,39302249,39303524,39304381,39308587,39313441,39314799,39315718,39318011,39319291,39321056,39327022,39346026,39347771,39348977,39350423	0.891892
esophagus_squamous_epithelium_male_adult_37_years	chr8	53523830	53523891	53523862	-	High_confidence	6	6	27	1.278714	4.213661	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.851852
esophagus_squamous_epithelium_male_adult_37_years	chr5	172958907	172958920	172958919	+	High_confidence	4	7	21	0.994556	3.594466	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr8	53523953	53523964	53523963	-	High_confidence	5	5	9	0.426238	3.000000	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.777778
esophagus_squamous_epithelium_male_adult_37_years	chr17	4736349	4736362	4736361	-	High_confidence	7	10	16	0.757757	2.521782	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr5	151541981	151542019	151542018	-	RAMPAGE_only	3	3	7	0.331519	2.807355	chr5	151542016	151542213	SINE|MIR|MIRc	-	chr5	151504093	151568944	STRG.33288.2	-	151504093,151507153,151510020,151512164,151517619,151527233,151527995,151529177,151531586,151534408,151537792,151540566,151549294,151550589,151551466,151553176,151554361,151556343,151563324,151565672	151506097,151507611,151510174,151512606,151525965,151527377,151528133,151529392,151531970,151534642,151537946,151548611,151549505,151550871,151551606,151553387,151554673,151556402,151563639,151568944	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr1	223176903	223176904	223176903	+	RAMPAGE_only	48	56	58	2.746868	5.251651	chr1	223176731	223177097	LTR|ERVL-MaLR|MLT1A0	+	chr1	223189650	223190892	STRG.7706.1	+	223189650	223190892	0.534483
esophagus_squamous_epithelium_male_adult_37_years	chr17	51006088	51006110	51006088	-	RAMPAGE_only	2	2	11	0.520958	2.921928	chr17	51005881	51006041	DNA|hAT-Charlie|Charlie17a	-	chr17	50996228	51001745	SPAG9|ENST00000513827.5	-	50996228,50998443,50999660,51001714	50996694,50998617,50999717,51001745	0.818182
esophagus_squamous_epithelium_male_adult_37_years	chr7	106249761	106249804	106249761	-	RAMPAGE_only	5	5	10	0.473598	3.121928	chr7	106249585	106249780	DNA|hAT-Charlie|MER58A	-	chr7	106248284	106285192	NAMPT|NM_005746.2	-	106248284,106253016,106254363,106261587,106263391,106268463,106269153,106272529,106274945,106277022,106284827	106251193,106253151,106254504,106261707,106263617,106268600,106269312,106272658,106275049,106277179,106285192	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr6	31186461	31186533	31186461	-	High_confidence	3	4	28	1.326074	4.664498	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31177131	31186522	STRG.35323.6	-	31177131	31186522	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr11	135063	135064	135063	-	RAMPAGE_only	6	6	9	0.426238	2.750000	chr11	134807	135227	DNA|hAT-Charlie|MER1A	-	chr11	133613	139117	LINC01001|ENST00000527683.1	-	133613,134563,134889,138046,138955	133778,134796,134947,138111,139117	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr18	36122242	36122258	36122242	-	High_confidence	4	5	8	0.378878	2.807355	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr14	91462180	91462210	91462180	-	High_confidence	4	5	19	0.899836	3.642150	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.947368
esophagus_squamous_epithelium_male_adult_37_years	chr20	25296821	25296874	25296873	+	RAMPAGE_only	4	4	17	0.805116	3.875000	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	0.941176
esophagus_squamous_epithelium_male_adult_37_years	chr2	27692017	27692018	27692017	+	High_confidence	14	14	17	0.805116	3.337175	chr2	27691985	27692111	SINE|Alu|AluJo	-	chr2	27691557	27694973	SLC4A1AP|ENST00000492196.1	+	27691557,27694633	27693754,27694973	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr15	43133126	43133146	43133134	+	High_confidence	3	3	10	0.473598	3.121928	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133143	43148788	TMEM62|ENST00000569535.5	+	43133143,43135511,43146492,43148754	43133402,43135649,43146634,43148788	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr10	28335269	28335296	28335295	-	High_confidence	15	17	59	2.794228	3.988500	chr10	28335237	28335330	SINE|Alu|AluYc	-	chr10	28334869	28335270	STRG.54045.1	-	28334869	28335270	0.881356
esophagus_squamous_epithelium_male_adult_37_years	chr1	39026110	39026131	39026110	+	High_confidence	4	4	10	0.473598	2.921928	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr9	18702070	18702071	18702070	-	High_confidence	156	161	185	8.761562	6.205460	chr9	18701896	18702263	LTR|ERVL-MaLR|THE1B	-	chr9	18655992	18702058	STRG.49515.1	-	18655992,18670172,18694347,18701979	18657739,18670287,18694419,18702058	0.794595
esophagus_squamous_epithelium_male_adult_37_years	chr9	92536703	92536704	92536703	-	High_confidence	4	5	6	0.284159	2.584963	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.833333
esophagus_squamous_epithelium_male_adult_37_years	chr2	105329670	105329671	105329670	-	High_confidence	4	4	7	0.331519	2.584963	chr2	105329666	105329774	LTR|ERV1|LTR2752	-	chr2	105264389	105329714	TGFBRAP1|NM_001142621.2	-	105264389,105269271,105272854,105273543,105275559,105277613,105280381,105284315,105296355,105298510,105307613,105329624	105267559,105269705,105273014,105273690,105275703,105277671,105280723,105284398,105296510,105298705,105308315,105329714	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chrX	7147275	7147288	7147287	+	High_confidence	11	11	19	0.899836	3.997670	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr15	30624357	30624368	30624367	+	High_confidence	5	5	18	0.852476	2.974938	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.944444
esophagus_squamous_epithelium_male_adult_37_years	chr12	883778	883830	883829	+	RAMPAGE_only	4	4	25	1.183995	4.323856	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	753055	911300	STRG.61487.5	+	753055,813641,827041,830002,857160,859244,861012,862082,878211,880720,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846,908474	754324,813814,827262,830160,857249,859464,861343,862270,878361,880999,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,908034,911300	0.960000
esophagus_squamous_epithelium_male_adult_37_years	chr11	65437264	65437557	65437556	+	RAMPAGE_only	56	57	771	36.514401	5.698815	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.996109
esophagus_squamous_epithelium_male_adult_37_years	chr19	46203116	46203117	46203116	-	High_confidence	5	6	7	0.331519	2.584963	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr8	16186271	16186277	16186271	-	High_confidence	4	5	8	0.378878	2.750000	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr1	54413473	54413493	54413492	-	High_confidence	3	3	8	0.378878	3.000000	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54243236	54413479	SSBP3|ENST00000525990.1	-	54243236,54251615,54251793,54257126,54281437,54401860,54404575,54404857,54413355	54243299,54251692,54251860,54257186,54281527,54401945,54404637,54404930,54413479	0.625000
esophagus_squamous_epithelium_male_adult_37_years	chr9	127451087	127451128	127451104	-	High_confidence	5	5	22	1.041915	3.630413	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.818182
esophagus_squamous_epithelium_male_adult_37_years	chr14	101731413	101731433	101731413	+	High_confidence	10	10	26	1.231355	4.700440	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.846154
esophagus_squamous_epithelium_male_adult_37_years	chr1	153001909	153001964	153001963	+	High_confidence	6	7	24	1.136635	4.303509	chr1	153001909	153001987	SINE|MIR|MIR3	-	chr1	153001748	153002400	SPRR3|ENST00000495845.1	+	153001748,153001945	153001793,153002400	0.958333
esophagus_squamous_epithelium_male_adult_37_years	chr3	14181568	14181627	14181568	+	RAMPAGE_only	2	3	18	0.852476	3.101881	chr3	14181325	14181571	SINE|MIR|MIR	-	chr3	14178727	14198369	LSM3|NM_014463.2	+	14178727,14181559,14183936,14198035	14178881,14181670,14184032,14198369	0.944444
esophagus_squamous_epithelium_male_adult_37_years	chr18	63586794	63586803	63586794	+	High_confidence	4	4	12	0.568318	3.277613	chr18	63586765	63586862	LINE|L2|L2a	+	chr18	63586988	63592884	SERPINB13|ENST00000431153.5	+	63586988,63587411,63588650,63589655,63592347,63592853	63587127,63587450,63588832,63589715,63592476,63592884	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr5	109383494	109383500	109383494	-	High_confidence	2	2	9	0.426238	3.000000	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr5	42837773	42837778	42837773	-	RAMPAGE_only	12	14	19	0.899836	3.681881	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.736842
esophagus_squamous_epithelium_male_adult_37_years	chr2	31180938	31180942	31180938	-	RAMPAGE_only	3	3	8	0.378878	2.521641	chr2	31180669	31180900	SINE|MIR|MIR	-	chr2	31171966	31217526	STRG.10055.3	-	31171966,31176586,31180935,31186427,31187757,31188317,31189272,31191398,31191934,31193130,31194408,31197248,31199469,31200450,31201861,31202133,31203069,31205222,31217455	31174707,31178579,31181000,31186485,31187814,31188354,31189478,31191407,31192098,31193294,31194483,31197334,31199532,31200625,31201998,31202252,31203139,31205499,31217526	0.625000
esophagus_squamous_epithelium_male_adult_37_years	chr21	13879434	13879437	13879434	-	RAMPAGE_only	13	14	23	1.089275	3.477175	chr21	13879017	13880326	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13885087	STRG.89033.17	-	13843069,13845004,13846012,13846758,13865636	13844135,13845274,13846141,13865504,13885087	0.956522
esophagus_squamous_epithelium_male_adult_37_years	chr2	171433377	171433378	171433377	-	High_confidence	6	6	8	0.378878	3.000000	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr21	13899867	13899893	13899892	-	RAMPAGE_only	5	6	9	0.426238	2.947703	chr21	13898559	13899880	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13906488	STRG.89033.13	-	13843069,13844021,13845004,13846012,13846758,13865636,13894138	13843432,13844135,13845274,13846141,13865504,13874584,13906488	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr13	113187442	113187464	113187442	-	High_confidence	1	1	7	0.331519	2.584963	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr10	89888004	89888058	89888037	+	RAMPAGE_only	2	2	10	0.473598	3.121928	chr10	89888002	89888814	LTR|ERV1|LTR8B	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.700000
esophagus_squamous_epithelium_male_adult_37_years	chr3	45034825	45034841	45034840	+	RAMPAGE_only	4	4	8	0.378878	2.750000	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr19	36157607	36157663	36157662	+	High_confidence	7	8	37	1.752312	4.871178	chr19	36157609	36157757	LTR|ERV1|HERVH-int	-	chr19	36157204	36159453	STRG.84978.9	+	36157204	36159453	0.918919
esophagus_squamous_epithelium_male_adult_37_years	chr6	11111805	11111841	11111805	-	High_confidence	8	9	34	1.610233	3.709876	chr6	11111706	11112217	LTR|ERV1|MER50	-	chr6	11102488	11111838	ERVFRD-1|NM_207582.2	-	11102488,11111676	11105630,11111838	0.941176
esophagus_squamous_epithelium_male_adult_37_years	chr3	37058844	37058907	37058883	-	RAMPAGE_only	5	5	26	1.231355	4.003856	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.961538
esophagus_squamous_epithelium_male_adult_37_years	chr2	46417152	46417159	46417152	-	High_confidence	33	59	112	5.304297	5.360248	chr2	46416809	46417546	LTR|ERVL|MER21A	+	chr2	46416366	46417160	STRG.10555.1	-	46416366	46417160	0.651786
esophagus_squamous_epithelium_male_adult_37_years	chr1	86548861	86548880	86548861	+	RAMPAGE_only	2	3	8	0.378878	2.521641	chr1	86548800	86548937	SINE|MIR|MIRc	+	chr1	86547077	86580754	CLCA4|ENST00000370563.3	+	86547077,86559931,86560210,86563660,86565273,86565801,86567423,86571076,86572613,86574539,86575331,86577901,86579353,86579941	86547278,86560072,86560358,86563769,86565451,86566020,86567651,86571254,86572720,86574755,86575599,86578072,86579587,86580754	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr9	20658597	20658634	20658607	+	High_confidence	4	4	12	0.568318	3.459432	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658341	20770112	STRG.49501.5	+	20658341,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr12	126772317	126772337	126772336	-	High_confidence	8	8	15	0.710397	3.235926	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126748055	126772356	LINC00944|ENST00000542248.5	-	126748055,126760931,126763414,126772078	126748127,126761045,126763498,126772356	0.866667
esophagus_squamous_epithelium_male_adult_37_years	chr17	1770501	1770534	1770512	+	High_confidence	14	14	47	2.225910	4.942275	chr17	1770450	1770759	SINE|Alu|AluSx1	-	chr17	1770525	1772032	SERPINF1|ENST00000570820.1	+	1770525,1771871	1771184,1772032	0.893617
esophagus_squamous_epithelium_male_adult_37_years	chr16	53445773	53445783	53445780	+	High_confidence	17	17	48	2.273270	4.386509	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.916667
esophagus_squamous_epithelium_male_adult_37_years	chr22	49657443	49657484	49657461	-	High_confidence	6	7	24	1.136635	3.606937	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49414523	49657504	C22orf34|ENST00000414287.5	-	49414523,49416601,49416814,49440875,49657404	49416035,49416735,49416928,49441212,49657504	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr5	148123616	148123638	148123637	+	RAMPAGE_only	5	5	9	0.426238	2.750000	chr5	148123584	148123718	LINE|CR1|L3	+	chr5	148064002	148137289	SPINK5|ENST00000256084.7	+	148064002,148065346,148070322,148072147,148086404,148088541,148089493,148091164,148094353,148095817,148097866,148099233,148100453,148101354,148101780,148104951,148107036,148108752,148111767,148112867,148114361,148116369,148118436,148118985,148120008,148120294,148123832,148124764,148125722,148126982,148131258,148133796,148136982	148064099,148065372,148070450,148072220,148086532,148088605,148089621,148091228,148094481,148095905,148097994,148099315,148100581,148101436,148101908,148105000,148107164,148108837,148111895,148112934,148114489,148116466,148118564,148119058,148120136,148120391,148123960,148124837,148125850,148127079,148131389,148133887,148137289	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr1	184810995	184811035	184811034	-	RAMPAGE_only	4	4	16	0.757757	3.189898	chr1	184810857	184811494	LTR|ERV1|MER57-int	+	chr1	184794117	184868041	FAM129A|ENST00000487074.5	-	184794117,184798078,184803584,184805945,184808073,184818637,184823166,184831846,184867863	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184831962,184868041	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chrX	5726096	5726129	5726116	-	High_confidence	21	22	61	2.888947	4.635718	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5718745	5726310	STRG.91976.1	-	5718745,5725929	5719872,5726310	0.803279
esophagus_squamous_epithelium_male_adult_37_years	chr1	150729856	150729867	150729856	-	High_confidence	5	5	25	1.183995	4.103465	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150646224	150729890	STRG.5121.1	-	150646224,150661813,150663631,150694655,150696991,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150714614,150717137,150719472,150729141,150729573	150648748,150661928,150663763,150694850,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150714678,150717282,150719538,150729225,150729890	0.960000
esophagus_squamous_epithelium_male_adult_37_years	chr2	143247289	143247353	143247289	+	RAMPAGE_only	10	10	35	1.657593	4.957854	chr2	143246994	143247508	LTR|ERVL|LTR32	+	chr2	143129329	143768352	ARHGAP15|NM_018460.3	+	143129329,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.657143
esophagus_squamous_epithelium_male_adult_37_years	chr5	109383442	109383463	109383454	-	High_confidence	4	4	19	0.899836	3.530493	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.947368
esophagus_squamous_epithelium_male_adult_37_years	chr12	10363964	10363965	10363964	+	High_confidence	28	28	41	1.941752	4.470612	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.731707
esophagus_squamous_epithelium_male_adult_37_years	chr5	133064420	133064455	133064444	+	RAMPAGE_only	15	15	63	2.983667	4.891708	chr5	133064223	133064516	SINE|Alu|AluSx	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.793651
esophagus_squamous_epithelium_male_adult_37_years	chr7	99410146	99410162	99410146	+	High_confidence	9	9	15	0.710397	3.467720	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.733333
esophagus_squamous_epithelium_male_adult_37_years	chr11	4129106	4129134	4129106	+	RAMPAGE_only	2	3	9	0.426238	3.000000	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr15	65642895	65642926	65642916	+	High_confidence	8	9	37	1.752312	5.014997	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	0.945946
esophagus_squamous_epithelium_male_adult_37_years	chr12	48489746	48489780	48489769	+	High_confidence	5	5	27	1.278714	4.176753	chr12	48489725	48490021	SINE|Alu|AluSx	-	chr12	48489780	48495273	STRG.63382.1	+	48489780,48490811,48492946,48494797	48489864,48490836,48492995,48495273	0.703704
esophagus_squamous_epithelium_male_adult_37_years	chr7	6590246	6590286	6590246	+	High_confidence	5	5	28	1.326074	4.378783	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.535714
esophagus_squamous_epithelium_male_adult_37_years	chr7	45940637	45940649	45940637	+	RAMPAGE_only	3	3	7	0.331519	2.521641	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45969656	45980191	AC073115.2|ENST00000416708.1	+	45969656,45978349,45979908	45969809,45978468,45980191	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr8	116648828	116648893	116648864	-	RAMPAGE_only	5	6	39	1.847032	4.432294	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.948718
esophagus_squamous_epithelium_male_adult_37_years	chr1	166603587	166603615	166603603	+	High_confidence	7	7	25	1.183995	4.501629	chr1	166603525	166603837	SINE|Alu|AluSz	+	chr1	166603915	166625238	FMO9P|ENST00000477875.6	+	166603915,166604759,166612459,166620798,166621869,166623643,166624680	166603984,166604857,166612603,166620987,166622032,166623786,166625238	0.640000
esophagus_squamous_epithelium_male_adult_37_years	chr1	224504669	224504680	224504669	+	RAMPAGE_only	3	3	9	0.426238	2.947703	chr1	224504696	224504911	SINE|MIR|MIRb	+	chr1	224513687	224521221	CNIH3|ENST00000496372.1	+	224513687,224515740,224520999	224513780,224515876,224521221	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chrY	4036474	4036502	4036500	+	High_confidence	2	4	8	0.378878	2.750000	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr21	33931154	33931213	33931154	+	High_confidence	4	4	31	1.468154	4.031402	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.870968
esophagus_squamous_epithelium_male_adult_37_years	chr22	50757202	50757252	50757247	+	High_confidence	69	72	261	12.360906	6.566027	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.716475
esophagus_squamous_epithelium_male_adult_37_years	chr1	9097151	9097152	9097151	-	RAMPAGE_only	10	10	10	0.473598	3.121928	chr1	9097058	9097391	LTR|ERV1|MER110A	+	chr1	9041784	9093822	STRG.280.3	-	9041784,9047609,9057447,9058151,9069503,9085013,9093791	9041937,9047734,9057608,9058250,9069594,9085142,9093822	0.800000
esophagus_squamous_epithelium_male_adult_37_years	chr11	77175226	77175303	77175226	+	High_confidence	16	19	62	2.936307	5.401808	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175301	77208583	STRG.59504.1	+	77175301,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353,77197480,77198494,77199648,77201447,77202299,77203059,77204075,77205461,77206096,77207288,77208429	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194524,77197598,77198621,77199818,77201638,77202424,77203217,77204229,77205617,77206202,77207402,77208583	0.983871
esophagus_squamous_epithelium_male_adult_37_years	chr12	118161787	118161804	118161787	-	RAMPAGE_only	2	3	7	0.331519	2.584963	chr12	118161659	118161751	DNA|hAT-Charlie|MER5B	-	chr12	118149941	118160358	TAOK3|ENST00000543709.5	-	118149941,118151093,118152226,118160145	118150077,118151158,118152409,118160358	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chrX	120143500	120143501	120143500	+	RAMPAGE_only	46	46	46	2.178550	4.822156	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120036235	120146854	RHOXF1-AS1|ENST00000553843.5	+	120036235,120120851,120138997,120143722,120145637	120036532,120121139,120139119,120143900,120146854	0.956522
esophagus_squamous_epithelium_male_adult_37_years	chr1	150729704	150729725	150729704	-	High_confidence	6	7	17	0.805116	3.750000	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150646224	150729890	STRG.5121.1	-	150646224,150661813,150663631,150694655,150696991,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150714614,150717137,150719472,150729141,150729573	150648748,150661928,150663763,150694850,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150714678,150717282,150719538,150729225,150729890	0.882353
esophagus_squamous_epithelium_male_adult_37_years	chr1	159005961	159005962	159005961	+	High_confidence	7	7	10	0.473598	2.921928	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr21	13881988	13881998	13881988	-	RAMPAGE_only	3	3	8	0.378878	2.750000	chr21	13881831	13883382	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13885087	STRG.89033.17	-	13843069,13845004,13846012,13846758,13865636	13844135,13845274,13846141,13865504,13885087	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr11	60182444	60182458	60182444	-	High_confidence	3	4	9	0.426238	2.725481	chr11	60182383	60182456	SINE|MIR|MIRb	-	chr11	60172019	60183030	STRG.58583.3	-	60172019,60173027,60175401,60178259,60179830,60181580,60182977	60172253,60173129,60175611,60178316,60179965,60181741,60183030	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr13	113187330	113187337	113187336	-	High_confidence	4	4	11	0.520958	3.121928	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.727273
esophagus_squamous_epithelium_male_adult_37_years	chr10	69416730	69416743	69416730	-	High_confidence	2	2	7	0.331519	2.584963	chr10	69416596	69416765	SINE|MIR|MIR3	-	chr10	69404483	69416867	TACR2|ENST00000373306.4	-	69404483,69407083,69408921,69414944,69415931	69405084,69407280,69409075,69415139,69416867	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chrX	15602157	15602158	15602157	-	High_confidence	5	6	8	0.378878	2.521641	chrX	15602053	15602111	LINE|CR1|L3	-	chrX	15594886	15602148	ACE2|ENST00000484756.1	-	15594886,15600725,15601955	15595003,15601014,15602148	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr21	13936206	13936237	13936206	-	RAMPAGE_only	3	3	22	1.041915	3.913977	chr21	13934252	13936999	Retroposon|SVA|SVA_A	-	chr21	13843069	13972129	STRG.89033.1	-	13843069,13845004,13846012,13846758,13879023,13887522,13900823,13907889,13909573,13910495,13911717,13915186,13916746,13917554,13925163,13932227,13939245,13940814,13945038,13951066,13951231,13954065,13969972	13844135,13845274,13846141,13859703,13879217,13891064,13907736,13908028,13909693,13910549,13911763,13915409,13916958,13917836,13925293,13938067,13939428,13940978,13945109,13951139,13951260,13967436,13972129	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr3	48430180	48430185	48430180	-	High_confidence	2	3	8	0.378878	3.000000	chr3	48430133	48430258	SINE|MIR|MIRb	+	chr3	48403853	48430051	PLXNB1|ENST00000296440.10	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48430007	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48430051	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr10	102449836	102449840	102449836	+	High_confidence	5	5	12	0.568318	3.584963	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.916667
esophagus_squamous_epithelium_male_adult_37_years	chr16	27286199	27286234	27286227	+	High_confidence	9	11	22	1.041915	3.939471	chr16	27285896	27286308	LTR|ERVL-MaLR|MLT1G	-	chr16	27286243	27290475	STRG.76156.1	+	27286243,27290244	27286366,27290475	0.818182
esophagus_squamous_epithelium_male_adult_37_years	chr2	171433325	171433326	171433325	-	High_confidence	4	4	7	0.331519	2.584963	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr19	39198216	39198236	39198216	+	RAMPAGE_only	4	4	14	0.663037	2.968919	chr19	39198261	39198457	SINE|MIR|MIRb	+	chr19	39196963	39201882	NCCRP1|NM_001001414.1	+	39196963,39198052,39198201,39199169,39200345,39200615	39197319,39198115,39198253,39199265,39200484,39201882	0.928571
esophagus_squamous_epithelium_male_adult_37_years	chr16	53456888	53456889	53456888	+	RAMPAGE_only	4	4	7	0.331519	2.584963	chr16	53456559	53457052	LINE|L2|L2a	+	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr8	123179113	123179114	123179113	+	High_confidence	7	7	7	0.331519	2.807355	chr8	123179159	123179521	LTR|ERVL-MaLR|MSTD	+	chr8	123179046	123210079	FAM83A|NM_207006.2	+	123179046,123182025,123191802,123194023,123207156,123209425	123180229,123183336,123191970,123194148,123207416,123210079	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr3	217534	217567	217566	+	RAMPAGE_only	8	10	38	1.799672	4.864727	chr3	217318	217820	LINE|L2|L2a	-	chr3	197643	399148	CHL1|ENST00000453040.5	+	197643,244612,319682,325958,328166,340793,341911,344588,349358,354639,360283,361698,363216,365949,377817,382178,382473,383815,389251,390700,390954,391674,394692,398226,399016	198092,244692,319867,326064,328354,340916,342082,344709,349543,354771,360424,361810,363383,366115,377942,382280,382671,383886,389474,390816,391159,391797,394872,398385,399148	0.684211
esophagus_squamous_epithelium_male_adult_37_years	chr6	31587009	31587011	31587009	+	High_confidence	35	49	60	2.841588	4.915061	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.966667
esophagus_squamous_epithelium_male_adult_37_years	chr16	12119804	12119834	12119833	+	RAMPAGE_only	3	3	6	0.284159	2.584963	chr16	12119724	12119951	SINE|MIR|MIRb	+	chr16	11976737	12574289	SNX29|ENST00000566228.5	+	11976737,11999296,12002990,12027319,12042896,12046383,12048371,12051846,12061527,12069056,12078832,12126632,12129629,12199600,12277932,12356162,12398445,12403447,12477718,12524701,12568505	11976813,11999358,12003043,12027444,12043077,12046454,12048620,12052222,12061646,12069132,12078915,12126696,12129758,12199683,12278036,12356279,12398501,12403529,12477859,12524841,12574289	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr1	19980362	19980363	19980362	-	High_confidence	5	7	7	0.331519	2.521641	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr17	77127872	77127873	77127872	+	High_confidence	7	7	11	0.520958	3.277613	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.636364
esophagus_squamous_epithelium_male_adult_37_years	chr21	13878231	13878239	13878231	-	RAMPAGE_only	4	4	15	0.710397	3.378783	chr21	13878218	13878326	LTR|ERVL-MaLR|MSTA	-	chr21	13843069	13885087	STRG.89033.17	-	13843069,13845004,13846012,13846758,13865636	13844135,13845274,13846141,13865504,13885087	0.933333
esophagus_squamous_epithelium_male_adult_37_years	chr5	73078287	73078289	73078287	+	RAMPAGE_only	5	11	12	0.568318	3.459432	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.916667
esophagus_squamous_epithelium_male_adult_37_years	chr14	41911310	41911355	41911354	+	High_confidence	4	6	18	0.852476	3.852169	chr14	41908983	41911704	LINE|L1|L1PA3	-	chr14	41911226	41915069	STRG.69408.1	+	41911226	41915069	0.611111
esophagus_squamous_epithelium_male_adult_37_years	chr13	60410080	60410081	60410080	+	RAMPAGE_only	26	27	29	1.373434	4.384517	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60397830	60573864	TDRD3|ENST00000648252.1	+	60397830,60400255,60402717,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573615	60398631,60400292,60402815,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573864	0.931034
esophagus_squamous_epithelium_male_adult_37_years	chr21	13962834	13962846	13962845	-	RAMPAGE_only	6	6	16	0.757757	3.625000	chr21	13962788	13963233	LINE|L1|L1MC1	+	chr21	13936992	13972129	STRG.89033.5	-	13936992,13939245,13940814,13943743,13945038,13951066,13951231,13954065,13969972	13938067,13939428,13940978,13943862,13945109,13951139,13951260,13967436,13972129	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr21	13895895	13895942	13895919	-	RAMPAGE_only	5	5	16	0.757757	3.640224	chr21	13894809	13896395	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13906488	STRG.89033.13	-	13843069,13844021,13845004,13846012,13846758,13865636,13894138	13843432,13844135,13845274,13846141,13865504,13874584,13906488	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr1	150510219	150510241	150510222	+	RAMPAGE_only	4	4	10	0.473598	2.947703	chr1	150510233	150510382	SINE|MIR|MIRb	+	chr1	150508106	150511146	STRG.5086.8	+	150508106,150509530,150509660,150509921,150510101	150508279,150509581,150509762,150510002,150511146	0.800000
esophagus_squamous_epithelium_male_adult_37_years	chr22	37755641	37755657	37755656	+	RAMPAGE_only	6	8	15	0.710397	3.456565	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	0.933333
esophagus_squamous_epithelium_male_adult_37_years	chr22	50756908	50756940	50756908	+	High_confidence	4	5	29	1.373434	4.521641	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50799123	STRG.91823.5	+	50756947,50783119,50785172,50798654	50757326,50783294,50785293,50799123	0.793103
esophagus_squamous_epithelium_male_adult_37_years	chr3	94648039	94648043	94648039	+	High_confidence	2	2	6	0.284159	2.584963	chr3	94648059	94648919	LTR|ERVK|HERVK11D-int	+	chr3	94647999	94655928	STRG.20039.1	+	94647999,94650821,94655798	94648144,94651003,94655928	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr12	53464833	53464852	53464833	+	RAMPAGE_only	4	4	14	0.663037	3.378783	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr11	90251203	90251205	90251204	+	High_confidence	4	7	8	0.378878	2.807355	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.625000
esophagus_squamous_epithelium_male_adult_37_years	chr2	46903560	46903561	46903560	-	RAMPAGE_only	4	4	7	0.331519	2.521641	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr20	38985964	38985988	38985964	+	RAMPAGE_only	2	3	9	0.426238	2.725481	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr15	71604872	71604906	71604872	+	RAMPAGE_only	4	4	10	0.473598	3.121928	chr15	71604763	71604899	LINE|L1|L1MEf	+	chr15	71547235	71617214	STRG.74144.8	+	71547235,71564840,71593475	71564749,71593137,71617214	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr6	2768837	2768861	2768846	+	High_confidence	2	2	6	0.284159	2.584963	chr6	2768884	2768965	SINE|MIR|MIRc	+	chr6	2768772	2785745	WRNIP1|ENST00000380764.1	+	2768772,2770119,2779262,2783405,2784323,2785006	2768882,2770361,2779492,2783561,2784403,2785745	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr11	57794021	57794073	57794021	+	RAMPAGE_only	6	6	23	1.089275	4.175736	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.956522
esophagus_squamous_epithelium_male_adult_37_years	chr3	58565354	58565407	58565354	-	RAMPAGE_only	4	4	22	1.041915	3.880180	chr3	58565323	58565435	DNA|hAT-Charlie|Charlie19a	+	chr3	58564111	58577764	FAM107A|NM_007177.3	-	58564111,58567207,58569690,58570325,58577308	58566695,58567364,58569865,58570423,58577764	0.954545
esophagus_squamous_epithelium_male_adult_37_years	chr2	159770678	159770681	159770680	-	RAMPAGE_only	3	5	8	0.378878	2.807355	chr2	159770609	159770782	DNA|TcMar-Tigger|Tigger3a	+	chr2	159768852	159798242	CD302|ENST00000259053.5	-	159768852,159777937,159780004,159780881,159783358,159798131	159772053,159777964,159780178,159780998,159783469,159798242	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr3	139344535	139344548	139344547	+	High_confidence	86	86	165	7.814366	5.512988	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.945455
esophagus_squamous_epithelium_male_adult_37_years	chr1	89272843	89272887	89272859	-	High_confidence	40	41	214	10.134996	5.845655	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.957944
esophagus_squamous_epithelium_male_adult_37_years	chr1	150729944	150729975	150729962	-	High_confidence	3	3	14	0.663037	3.392747	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150646224	150729890	STRG.5121.1	-	150646224,150661813,150663631,150694655,150696991,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150714614,150717137,150719472,150729141,150729573	150648748,150661928,150663763,150694850,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150714678,150717282,150719538,150729225,150729890	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr11	62598024	62598028	62598027	-	RAMPAGE_only	4	4	8	0.378878	2.521641	chr11	62597909	62598004	DNA|hAT-Tip100|MER91C	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr21	28090097	28090154	28090131	+	High_confidence	7	8	34	1.610233	4.309101	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28089888	28102790	LINC01697|ENST00000423808.2	+	28089888,28102549	28090521,28102790	0.941176
esophagus_squamous_epithelium_male_adult_37_years	chr2	200889279	200889318	200889293	-	High_confidence	34	34	86	4.072942	5.555833	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.581395
esophagus_squamous_epithelium_male_adult_37_years	chr3	94648084	94648107	94648084	+	High_confidence	6	7	35	1.657593	4.629004	chr3	94648059	94648919	LTR|ERVK|HERVK11D-int	+	chr3	94647999	94655928	STRG.20039.1	+	94647999,94650821,94655798	94648144,94651003,94655928	0.914286
esophagus_squamous_epithelium_male_adult_37_years	chr14	57274833	57274834	57274833	+	RAMPAGE_only	5	5	8	0.378878	2.500000	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr9	73113894	73113905	73113894	-	High_confidence	120	130	318	15.060414	6.458275	chr9	73113574	73113872	SINE|Alu|AluJo	-	chr9	73090378	73113933	STRG.50819.2	-	73090378,73090628,73111793,73112238	73090567,73091997,73111906,73113933	0.984277
esophagus_squamous_epithelium_male_adult_37_years	chr11	64242615	64242620	64242619	+	High_confidence	4	5	10	0.473598	3.321928	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr9	35657477	35657499	35657477	+	High_confidence	2	2	7	0.331519	2.521641	chr9	35657503	35657740	SINE|Alu|AluJb	+	chr9	35658289	35661503	CCDC107|NM_174923.2	+	35658289,35658575,35660400,35660556,35660745	35658485,35658727,35660461,35660647,35661503	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr6	31186054	31186118	31186054	-	High_confidence	38	40	160	7.577567	6.041367	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31177131	31186522	STRG.35323.6	-	31177131	31186522	0.981250
esophagus_squamous_epithelium_male_adult_37_years	chr22	42721262	42721272	42721262	-	High_confidence	2	2	7	0.331519	2.584963	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr5	96934464	96934465	96934464	+	High_confidence	4	4	6	0.284159	2.584963	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr6	149895943	149895960	149895954	-	High_confidence	2	2	10	0.473598	2.725481	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.700000
esophagus_squamous_epithelium_male_adult_37_years	chr1	116390246	116390310	116390289	+	RAMPAGE_only	10	10	51	2.415349	4.513196	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.901961
esophagus_squamous_epithelium_male_adult_37_years	chr6	31587190	31587248	31587201	+	High_confidence	6	6	37	1.752312	4.162722	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr15	75347037	75347043	75347039	+	High_confidence	3	5	10	0.473598	3.169925	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.600000
esophagus_squamous_epithelium_male_adult_37_years	chr10	84171750	84171814	84171788	-	High_confidence	18	18	141	6.677731	5.546691	chr10	84171609	84171986	LTR|ERV1|Harlequin-int	-	chr10	84148390	84172093	STRG.55311.2	-	84148390,84171330	84171014,84172093	0.836879
esophagus_squamous_epithelium_male_adult_37_years	chr18	23474881	23474882	23474881	+	RAMPAGE_only	6	6	6	0.284159	2.584963	chr18	23474513	23474894	LINE|L2|L2c	+	chr18	23479006	23483137	RIOK3|ENST00000581220.1	+	23479006,23481171	23479424,23483137	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr9	39809803	39809859	39809858	-	High_confidence	18	20	46	2.178550	4.550649	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803267	39810013	STRG.50157.2	-	39803267,39809485,39809730	39803859,39809615,39810013	0.782609
esophagus_squamous_epithelium_male_adult_37_years	chrX	44225755	44225803	44225755	-	High_confidence	9	9	66	3.125746	4.297581	chrX	44225702	44225811	SINE|MIR|MIR3	-	chrX	44147881	44225756	EFHC2|ENST00000343571.3	-	44147881,44163921,44176291,44178366,44225684	44148896,44164027,44176384,44178564,44225756	0.939394
esophagus_squamous_epithelium_male_adult_37_years	chr8	143281655	143281687	143281686	-	High_confidence	50	60	213	10.087636	5.491680	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.568075
esophagus_squamous_epithelium_male_adult_37_years	chr8	120125606	120125637	120125636	+	High_confidence	3	3	10	0.473598	2.721928	chr8	120125674	120125869	DNA|hAT-Tip100?|MamRep1879	+	chr8	120125143	120277865	COL14A1|ENST00000432943.6	+	120125143,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120277484	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120277865	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr7	93114805	93114816	93114805	-	RAMPAGE_only	6	6	11	0.520958	3.121928	chr7	93114451	93114819	LINE|L1|L1ME3	+	chr7	93102248	93117962	SAMD9|ENST00000446617.1	-	93102248,93117862	93106105,93117962	0.909091
esophagus_squamous_epithelium_male_adult_37_years	chr22	21940680	21940685	21940680	-	High_confidence	3	3	9	0.426238	2.503258	chr22	21940485	21940733	LTR|ERVL-MaLR|MLT1C	+	chr22	21931265	21940657	PPM1F|ENST00000445205.1	-	21931265,21933390,21934023,21939531,21940574	21931291,21933579,21934226,21939680,21940657	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr1	6208681	6208682	6208681	-	High_confidence	247	247	247	11.697869	3.955077	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr5	42837660	42837679	42837678	-	RAMPAGE_only	5	5	9	0.426238	2.500000	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr1	9085638	9085652	9085638	-	High_confidence	4	5	8	0.378878	2.750000	chr1	9085146	9085738	LTR|ERV1|MER4E	-	chr1	9040079	9085572	STRG.280.2	-	9040079,9041784,9047609,9057447,9058151,9069503,9085013,9085499	9040189,9041937,9047734,9057608,9058250,9069594,9085142,9085572	0.625000
esophagus_squamous_epithelium_male_adult_37_years	chr6	108960827	108960833	108960827	+	RAMPAGE_only	5	5	11	0.520958	2.913977	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108959459	108965117	ARMC2|ENST00000481850.1	+	108959459,108961571,108962013,108964179,108964979	108959519,108961694,108962127,108964312,108965117	0.545455
esophagus_squamous_epithelium_male_adult_37_years	chr3	9987152	9987163	9987162	+	High_confidence	4	4	11	0.520958	2.550341	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9987214	10003097	EMC3-AS1|ENST00000440568.1	+	9987214,9987814,9988711,10002716	9987264,9987905,9988747,10003097	0.545455
esophagus_squamous_epithelium_male_adult_37_years	chr7	141737468	141737469	141737468	+	High_confidence	5	5	7	0.331519	2.521641	chr7	141736645	141737590	DNA|TcMar-Tigger|Tigger3b	+	chr7	141738320	141750461	SSBP1|ENST00000265304.10	+	141738320,141739123,141742168,141743560,141743901,141745495,141750310	141738410,141739190,141742229,141743701,141743989,141745584,141750461	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr16	57396178	57396179	57396178	+	RAMPAGE_only	5	6	7	0.331519	2.584963	chr16	57395466	57396953	LTR|ERV1|HERV9-int	-	chr16	57404766	57416062	CCL17|NM_002987.2	+	57404766,57413873,57415080,57415764	57404836,57414002,57415198,57416062	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr5	148089222	148089231	148089222	+	RAMPAGE_only	2	2	7	0.331519	2.521641	chr5	148089083	148089302	LINE|L2|L2c	+	chr5	148090652	148098003	SPINK5|ENST00000481286.5	+	148090652,148091164,148094353,148095817,148097866	148090700,148091228,148094481,148095905,148098003	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr9	127543805	127543810	127543805	-	RAMPAGE_only	6	6	14	0.663037	3.392747	chr9	127543678	127543822	LINE|L2|L2c	+	chr9	127507171	127568953	FAM129B|ENST00000468379.1	-	127507171,127507866,127525057,127527193,127531647,127568819	127507431,127507934,127525163,127527322,127531778,127568953	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr1	89371619	89371644	89371619	+	RAMPAGE_only	4	5	16	0.757757	3.773557	chr1	89371198	89373819	LINE|L1|L1PA5	+	chr1	89363890	89495697	STRG.3756.6	+	89363890,89368538,89369545,89495550	89364127,89368741,89372243,89495697	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr12	110440313	110440374	110440313	-	RAMPAGE_only	17	19	71	3.362545	5.673742	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.971831
esophagus_squamous_epithelium_male_adult_37_years	chr1	148900909	148900910	148900909	+	RAMPAGE_only	4	4	6	0.284159	2.584963	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148889644	148993882	PDE4DIP|ENST00000369351.7	+	148889644,148929196,148931799,148932112,148937746,148960653,148961836,148962195,148962427,148965483,148966542,148966838,148967725,148968835,148972179,148972510,148974513,148977936,148978277,148979736,148981269,148991884	148889894,148929273,148931923,148932288,148937864,148960785,148961956,148962288,148962640,148965642,148966656,148966976,148967905,148969030,148972344,148972592,148974605,148978053,148978415,148979849,148981397,148993882	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr9	129698722	129698738	129698737	+	High_confidence	11	13	26	1.231355	4.403856	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129698749	129722674	STRG.52868.2	+	129698749,129719230,129720595,129722216	129698809,129719418,129720774,129722674	0.961538
esophagus_squamous_epithelium_male_adult_37_years	chrY	8126200	8126245	8126237	-	High_confidence	20	21	83	3.930863	5.869015	chrY	8126183	8126768	LTR|ERVK|LTR14C	-	chrY	8121596	8126286	STRG.95912.2	-	8121596	8126286	0.554217
esophagus_squamous_epithelium_male_adult_37_years	chr6	167271323	167271326	167271325	+	High_confidence	6	9	10	0.473598	2.947703	chr6	167271259	167271341	DNA|hAT-Charlie|MER5A	+	chr6	167271168	167296196	UNC93A|ENST00000503433.5	+	167271168,167291438,167294516,167296031	167271458,167291576,167294698,167296196	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr15	89473114	89473162	89473161	-	RAMPAGE_only	3	3	12	0.568318	3.277613	chr15	89473010	89473259	LINE|L2|L2b	-	chr15	89471444	89479430	RHCG|ENST00000558360.1	-	89471444,89472710,89476754,89477081,89477516,89477836,89479321	89471722,89472863,89476828,89477206,89477653,89477974,89479430	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr11	34662145	34662318	34662145	+	RAMPAGE_only	7	10	122	5.777895	4.138980	chr11	34662079	34662189	LINE|L2|L2c	+	chr11	34632463	34663288	EHF|NM_001206616.1	+	34632463,34642627,34646438,34649018,34651541,34651736,34656907,34658532,34658831	34632652,34642727,34646684,34649081,34651610,34651805,34656970,34658728,34663288	0.967213
esophagus_squamous_epithelium_male_adult_37_years	chr3	195688663	195688694	195688693	+	High_confidence	2	2	7	0.331519	2.584963	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688681	195708807	MUC20-OT1|ENST00000627562.2	+	195688681,195689338,195699029,195701379,195708133	195688797,195689438,195699207,195701495,195708807	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr22	35896684	35896689	35896687	-	RAMPAGE_only	16	27	49	2.320630	5.152569	chr22	35896673	35896791	LINE|L2|L2	+	chr22	35743982	35938897	RBFOX2|ENST00000359369.8	-	35743982,35745922,35746472,35750425,35756104,35759887,35761201,35761414,35765422,35768256,35778024,35781599,35809779,35938846	35744249,35745995,35746561,35750457,35756144,35760020,35761294,35761468,35765483,35768349,35778078,35781743,35810004,35938897	0.755102
esophagus_squamous_epithelium_male_adult_37_years	chr19	41656807	41656869	41656868	-	RAMPAGE_only	2	3	10	0.473598	2.725481	chr19	41656796	41663167	LINE|L1|L1PA7	+	chr19	41651554	41651864	STRG.85389.1	-	41651554	41651864	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr10	121974536	121974547	121974546	-	High_confidence	5	5	12	0.568318	3.095795	chr10	121974357	121974506	DNA|hAT-Charlie|MER5A	-	chr10	121967377	121974788	NSMCE4A|ENST00000481320.5	-	121967377,121970938,121974003	121967806,121971069,121974788	0.583333
esophagus_squamous_epithelium_male_adult_37_years	chr16	15006394	15006404	15006394	+	RAMPAGE_only	5	6	12	0.568318	3.277613	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	14997747	15038323	PDXDC1|ENST00000450288.3	+	14997747,14998339,15006393,15008778,15009680,15016128,15017119,15017320,15018839,15022703,15026642,15028877,15029950,15031734,15032860,15033277,15034285,15034456,15035448,15036015	14997826,14998405,15006583,15008847,15009759,15016213,15017168,15017422,15018965,15022754,15026706,15028966,15030056,15031906,15032979,15033399,15034378,15034553,15035553,15038323	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr2	229232040	229232054	229232053	-	High_confidence	12	13	33	1.562873	4.801970	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.878788
esophagus_squamous_epithelium_male_adult_37_years	chr9	116838440	116838467	116838466	+	High_confidence	3	4	10	0.473598	2.947703	chr9	116838426	116838730	SINE|Alu|AluSq2	-	chr9	116838224	116841834	STRG.52356.1	+	116838224,116841428	116839021,116841834	0.700000
esophagus_squamous_epithelium_male_adult_37_years	chr3	11225912	11225928	11225912	-	High_confidence	3	3	17	0.805116	3.616875	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.647059
esophagus_squamous_epithelium_male_adult_37_years	chr7	135699756	135699762	135699761	-	RAMPAGE_only	4	4	9	0.426238	3.169925	chr7	135699616	135699841	SINE|MIR|MIRb	+	chr7	135699363	135705807	SLC13A4|ENST00000480376.1	-	135699363,135701679,135702844,135705595	135699548,135701760,135702884,135705807	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr7	111413972	111414006	111413984	-	RAMPAGE_only	7	7	22	1.041915	4.297079	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	111382541	111451522	STRG.43941.9	-	111382541	111451522	0.590909
esophagus_squamous_epithelium_male_adult_37_years	chr3	188884122	188884372	188884260	+	RAMPAGE_only	9	10	137	6.488292	6.041641	chr3	188884141	188884305	SINE|MIR|MIRc	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.985401
esophagus_squamous_epithelium_male_adult_37_years	chr3	188885695	188885729	188885695	+	RAMPAGE_only	3	3	11	0.520958	3.121928	chr3	188885494	188885956	LINE|L1|L1PA3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.909091
esophagus_squamous_epithelium_male_adult_37_years	chr3	151531371	151531412	151531411	-	RAMPAGE_only	15	18	33	1.562873	4.800813	chr3	151528406	151534796	LINE|L1|L1PA7	+	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.575758
esophagus_squamous_epithelium_male_adult_37_years	chr8	61578141	61578142	61578141	+	High_confidence	21	21	21	0.994556	3.689704	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr9	73154458	73154504	73154458	+	RAMPAGE_only	15	15	46	2.178550	4.629412	chr9	73154423	73154738	SINE|Alu|AluSz6	-	chr9	73151901	73160338	ANXA1|ENST00000415424.5	+	73151901,73154197,73158521,73158694,73159328,73160262	73151924,73154340,73158601,73158803,73159423,73160338	0.673913
esophagus_squamous_epithelium_male_adult_37_years	chr1	86549200	86549213	86549212	+	RAMPAGE_only	4	5	12	0.568318	3.277613	chr1	86549018	86549901	LINE|L2|L2a	-	chr1	86547077	86580754	CLCA4|ENST00000370563.3	+	86547077,86559931,86560210,86563660,86565273,86565801,86567423,86571076,86572613,86574539,86575331,86577901,86579353,86579941	86547278,86560072,86560358,86563769,86565451,86566020,86567651,86571254,86572720,86574755,86575599,86578072,86579587,86580754	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr7	77990390	77990432	77990413	+	High_confidence	17	19	76	3.599344	5.597031	chr7	77987877	77991087	LINE|L1|L1PBa1	-	chr7	77990397	77992928	STRG.42323.2	+	77990397	77992928	0.631579
esophagus_squamous_epithelium_male_adult_37_years	chr7	102822458	102822461	102822458	-	RAMPAGE_only	8	8	15	0.710397	3.664498	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.800000
esophagus_squamous_epithelium_male_adult_37_years	chr6	40867503	40867504	40867503	-	High_confidence	6	6	7	0.331519	2.584963	chr6	40861829	40868245	LTR|ERV1|HERVH-int	-	chr6	40854909	40867725	STRG.35767.1	-	40854909,40861326,40867389	40858753,40861478,40867725	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr6	71291118	71291169	71291142	+	High_confidence	3	3	13	0.615677	3.251629	chr6	71290785	71291650	LINE|L2|L2	-	chr6	71291361	71293612	OGFRL1|ENST00000467503.1	+	71291361,71293292,71293532	71292020,71293379,71293612	0.846154
esophagus_squamous_epithelium_male_adult_37_years	chr4	2867815	2867851	2867835	+	High_confidence	12	13	42	1.989111	4.963746	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr4	145034318	145034339	145034338	+	RAMPAGE_only	5	7	11	0.520958	3.027169	chr4	145034139	145034543	LTR|ERVL|MLT2A1	+	chr4	145097931	145129179	ABCE1|ENST00000296577.8	+	145097931,145104385,145105604,145108014,145109131,145110102,145110374,145110967,145112238,145117292,145119931,145121173,145121332,145123020,145123214,145123477,145124989,145127525	145098419,145104515,145105690,145108112,145109249,145110240,145110444,145111064,145112328,145117414,145120153,145121233,145121391,145123131,145123357,145123600,145125101,145129179	0.818182
esophagus_squamous_epithelium_male_adult_37_years	chr1	54528738	54528784	54528738	-	RAMPAGE_only	2	2	12	0.568318	3.027169	chr1	54528534	54529066	LTR|ERVL-MaLR|MLT1J	-	chr1	54516411	54517259	AC099796.1|ENST00000433377.1	-	54516411,54517203	54517038,54517259	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr3	135965701	135965749	135965723	+	High_confidence	54	69	267	12.645065	6.412398	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.985019
esophagus_squamous_epithelium_male_adult_37_years	chr22	39021146	39021177	39021160	+	High_confidence	10	10	45	2.131191	4.664523	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.955556
esophagus_squamous_epithelium_male_adult_37_years	chr9	72363509	72363574	72363573	-	High_confidence	3	3	16	0.757757	3.750000	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.562500
esophagus_squamous_epithelium_male_adult_37_years	chr1	171207723	171207774	171207773	+	High_confidence	11	11	40	1.894392	4.477459	chr1	171207821	171208000	DNA|hAT-Charlie|MER5A	+	chr1	171207542	171209207	FMO2|ENST00000488431.1	+	171207542,171208793	171207790,171209207	0.650000
esophagus_squamous_epithelium_male_adult_37_years	chr5	149905164	149905171	149905164	-	RAMPAGE_only	2	2	6	0.284159	2.584963	chr5	149904974	149905604	LINE|L2|L2c	+	chr5	149857954	149944793	PDE6A|ENST00000617647.4	-	149857954,149859891,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647,149907311,149914942,149921634,149931027,149944199	149858530,149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149903695,149907378,149915007,149921709,149931168,149944793	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr10	30999506	30999520	30999519	-	High_confidence	8	9	15	0.710397	3.906891	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.533333
esophagus_squamous_epithelium_male_adult_37_years	chr4	79492569	79492596	79492595	+	High_confidence	3	3	10	0.473598	2.641604	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.700000
esophagus_squamous_epithelium_male_adult_37_years	chr9	92077156	92077158	92077156	-	RAMPAGE_only	15	31	33	1.562873	4.284684	chr9	92072526	92078223	LTR|ERV1|HERVH-int	+	chr9	92028457	92080076	SPTLC1|ENST00000646481.1	-	92028457,92029179,92034809,92038247,92045998,92046274,92047171,92047612,92049959,92055404,92059178,92067965,92076797,92080015	92028757,92029346,92034883,92038365,92046053,92046334,92047268,92047708,92050067,92055494,92059308,92068098,92077035,92080076	0.909091
esophagus_squamous_epithelium_male_adult_37_years	chr21	28090265	28090314	28090313	+	High_confidence	2	2	8	0.378878	2.750000	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr6	111606264	111606277	111606276	-	High_confidence	5	5	11	0.520958	3.277613	chr6	111606274	111606582	SINE|Alu|AluY	+	chr6	111555377	111606274	TRAF3IP2|NM_147686.3	-	111555377,111562964,111566443,111567623,111572894,111575642,111580196,111591257,111605775	111559551,111563039,111566560,111567692,111572983,111575821,111580389,111592094,111606274	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr15	34988764	34988792	34988764	-	High_confidence	3	3	16	0.757757	3.452820	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988785	STRG.72370.2	-	34978340,34987556,34988502	34983490,34987673,34988785	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr12	48489292	48489316	48489315	+	High_confidence	23	24	67	3.173106	5.453857	chr12	48489156	48489319	DNA|hAT-Tip100|MamTip3	+	chr12	48489780	48495273	STRG.63382.1	+	48489780,48490811,48492946,48494797	48489864,48490836,48492995,48495273	0.671642
esophagus_squamous_epithelium_male_adult_37_years	chr8	80485592	80485617	80485592	+	High_confidence	3	3	10	0.473598	3.121928	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr11	65444419	65444435	65444419	+	RAMPAGE_only	33	34	73	3.457265	5.648956	chr11	65444390	65444497	SINE|MIR|MIR1_Amn	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.986301
esophagus_squamous_epithelium_male_adult_37_years	chr2	201116007	201116034	201116007	+	High_confidence	3	3	12	0.568318	2.663533	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.916667
esophagus_squamous_epithelium_male_adult_37_years	chr11	65430093	65430607	65430606	+	RAMPAGE_only	38	38	639	30.262908	6.459519	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998435
esophagus_squamous_epithelium_male_adult_37_years	chr12	10363706	10363707	10363706	+	High_confidence	4	4	6	0.284159	2.584963	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr3	197546728	197546733	197546731	-	RAMPAGE_only	18	25	42	1.989111	4.638711	chr3	197546665	197546787	SINE|MIR|MIR3	+	chr3	197533492	197555956	STRG.23851.13	-	197533492,197540705,197555780	197540196,197546486,197555956	0.547619
esophagus_squamous_epithelium_male_adult_37_years	chr1	34754775	34754799	34754798	+	High_confidence	6	11	29	1.373434	4.351823	chr1	34754671	34754841	SINE|MIR|MIR	-	chr1	34755046	34758512	GJB5|NM_005268.3	+	34755046,34757306	34755195,34758512	0.862069
esophagus_squamous_epithelium_male_adult_37_years	chr19	11539683	11539706	11539705	+	High_confidence	9	9	15	0.710397	3.807355	chr19	11539660	11539789	SINE|MIR|MIRb	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	0.800000
esophagus_squamous_epithelium_male_adult_37_years	chr8	144063438	144063458	144063457	-	High_confidence	6	6	18	0.852476	4.058814	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144053212	144063943	STRG.48797.2	-	144053212,144054560,144054811,144055028,144055787,144056146,144056384,144056617,144057207,144057447,144058009,144058238,144058495,144058772,144058979,144059861,144063699	144053393,144054735,144054913,144055189,144055939,144056259,144056523,144057118,144057320,144057923,144058148,144058404,144058691,144058896,144059790,144060085,144063943	0.555556
esophagus_squamous_epithelium_male_adult_37_years	chr4	81154211	81154222	81154211	-	High_confidence	14	15	29	1.373434	4.375222	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.965517
esophagus_squamous_epithelium_male_adult_37_years	chr20	50131130	50131151	50131130	-	High_confidence	4	4	11	0.520958	3.321928	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.909091
esophagus_squamous_epithelium_male_adult_37_years	chr6	82101686	82101706	82101699	-	RAMPAGE_only	6	6	21	0.994556	3.939471	chr6	82101303	82107312	LINE|L1|L1PA2	+	chr6	81845184	81933480	LINC02542|ENST00000418567.1	-	81845184,81928856,81933428	81845909,81928901,81933480	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr2	187529438	187529468	187529438	-	RAMPAGE_only	2	2	17	0.805116	3.750000	chr2	187529293	187529670	LTR|ERVL-MaLR|MLT1B	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.764706
esophagus_squamous_epithelium_male_adult_37_years	chr22	23696411	23696435	23696423	+	High_confidence	3	3	13	0.615677	2.661226	chr22	23696381	23696442	SINE|MIR|MIRb	-	chr22	23696483	23699176	RGL4|ENST00000452208.1	+	23696483,23697170,23697837,23698211,23698843	23696688,23697245,23697861,23698333,23699176	0.846154
esophagus_squamous_epithelium_male_adult_37_years	chr21	13889628	13889629	13889628	-	RAMPAGE_only	19	19	25	1.183995	4.136842	chr21	13888588	13890121	LTR|ERVL-MaLR|MSTA-int	-	chr21	13843069	13972129	STRG.89033.1	-	13843069,13845004,13846012,13846758,13879023,13887522,13900823,13907889,13909573,13910495,13911717,13915186,13916746,13917554,13925163,13932227,13939245,13940814,13945038,13951066,13951231,13954065,13969972	13844135,13845274,13846141,13859703,13879217,13891064,13907736,13908028,13909693,13910549,13911763,13915409,13916958,13917836,13925293,13938067,13939428,13940978,13945109,13951139,13951260,13967436,13972129	0.920000
esophagus_squamous_epithelium_male_adult_37_years	chr6	77369106	77369167	77369106	-	High_confidence	7	7	46	2.178550	5.386189	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77271336	77369158	STRG.36666.1	-	77271336,77273026,77350621,77368885	77271493,77273307,77350734,77369158	0.782609
esophagus_squamous_epithelium_male_adult_37_years	chr7	110919865	110919881	110919880	+	High_confidence	3	3	6	0.284159	2.584963	chr7	110919742	110920295	LTR|ERVL|MLT2A2	+	chr7	110919926	110933260	STRG.43930.1	+	110919926,110931188,110933141	110920212,110931357,110933260	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr9	72295108	72295109	72295108	+	RAMPAGE_only	27	27	27	1.278714	3.838040	chr9	72295156	72295467	SINE|Alu|AluJb	+	chr9	73151730	73170393	ANXA1|NM_000700.2	+	73151730,73158521,73158694,73159328,73160262,73160802,73162781,73163475,73165115,73166096,73167496,73169031,73170050	73151924,73158601,73158803,73159423,73160376,73160893,73162861,73163532,73165209,73166192,73167555,73169154,73170393	0.962963
esophagus_squamous_epithelium_male_adult_37_years	chr10	72355145	72355146	72355145	-	High_confidence	10	10	14	0.663037	3.238901	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr6	31186398	31186399	31186398	-	High_confidence	46	49	58	2.746868	5.117892	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31177131	31186522	STRG.35323.6	-	31177131	31186522	0.965517
esophagus_squamous_epithelium_male_adult_37_years	chr17	76014915	76014924	76014915	-	RAMPAGE_only	4	4	9	0.426238	2.750000	chr17	76014756	76014878	SINE|MIR|MIR	-	chr17	76011520	76012291	EVPL|ENST00000593037.1	-	76011520,76011771,76012005	76011668,76011882,76012291	0.555556
esophagus_squamous_epithelium_male_adult_37_years	chr2	70257706	70257707	70257706	+	High_confidence	5	5	7	0.331519	2.584963	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr15	93863033	93863066	93863039	+	High_confidence	11	12	39	1.847032	4.734512	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863054	93865755	STRG.75043.2	+	93863054,93865373	93863216,93865755	0.589744
esophagus_squamous_epithelium_male_adult_37_years	chr1	181044839	181044854	181044846	+	RAMPAGE_only	2	2	7	0.331519	2.807355	chr1	181044850	181045171	DNA|hAT-Tip100|MER115	+	chr1	181034009	181055284	MR1|ENST00000438435.6	+	181034009,181036996,181049051,181050010,181053572,181055224	181034074,181037112,181049312,181050286,181053677,181055284	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chrX	152920382	152920400	152920382	+	High_confidence	4	4	10	0.473598	2.921928	chrX	152920417	152920551	SINE|MIR|MIR3	+	chrX	152920348	152973473	ZNF185|ENST00000426821.6	+	152920348,152920706,152922172,152931671,152932872,152938073,152945266,152959698,152963838,152965446,152967166,152969381,152970442,152971273	152920411,152920748,152922256,152931776,152932971,152938163,152945464,152959896,152963949,152965527,152967238,152969484,152970541,152973473	0.700000
esophagus_squamous_epithelium_male_adult_37_years	chr12	64293377	64293380	64293379	-	High_confidence	54	96	103	4.878059	5.976114	chr12	64287349	64293377	LINE|L1|L1PA2	-	chr12	64266982	64293383	C12orf56|ENST00000536975.5	-	64266982,64270535,64274900,64275297,64277679,64284663,64285953,64293280	64267288,64270714,64274975,64275372,64277803,64284753,64286060,64293383	0.864078
esophagus_squamous_epithelium_male_adult_37_years	chr14	95146612	95146625	95146612	-	RAMPAGE_only	3	4	18	0.852476	3.410417	chr14	95146085	95146813	LTR|ERV1|LTR27C	+	chr14	95086228	95141718	DICER1|ENST00000393063.5	-	95086228,95091033,95091202,95093887,95095824,95099779,95103345,95105070,95105677,95106040,95107607,95107879,95108323,95111316,95112171,95113091,95115666,95116452,95117621,95124195,95126579,95129471,95130057,95131508,95132514,95133314,95140658,95141682	95090663,95091109,95091365,95094156,95096713,95099935,95104126,95105246,95105783,95106223,95107761,95108093,95108503,95111456,95112247,95113224,95115821,95116695,95117754,95124668,95126748,95129632,95130192,95131639,95132677,95133503,95140759,95141718	0.777778
esophagus_squamous_epithelium_male_adult_37_years	chr3	33838228	33838257	33838256	+	RAMPAGE_only	20	20	50	2.367990	5.022474	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.740000
esophagus_squamous_epithelium_male_adult_37_years	chr7	87319219	87319235	87319219	-	High_confidence	3	5	14	0.663037	3.521641	chr7	87318389	87319585	LINE|L1|L1P3	-	chr7	87318220	87319026	STRG.42907.1	-	87318220	87319026	0.642857
esophagus_squamous_epithelium_male_adult_37_years	chr10	80176123	80176149	80176123	-	RAMPAGE_only	6	6	18	0.852476	3.616875	chr10	80176083	80176485	LINE|L1|L1ME4b	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr8	9188188	9188211	9188188	+	High_confidence	3	3	11	0.520958	3.321928	chr8	9188163	9188460	LINE|L2|L2b	-	chr8	9188958	9203126	AC022784.1|ENST00000649571.1	+	9188958,9189347,9198923,9202498	9189046,9189586,9198991,9203126	0.818182
esophagus_squamous_epithelium_male_adult_37_years	chr2	113121224	113121225	113121224	+	RAMPAGE_only	8	8	10	0.473598	2.947703	chr2	113121169	113121237	LTR|ERV1|MER41A	-	chr2	113117980	113133121	STRG.12598.4	+	113117980,113127688,113129575,113131044,113132655	113121618,113127740,113129664,113131157,113133121	0.800000
esophagus_squamous_epithelium_male_adult_37_years	chr3	28347646	28347654	28347653	-	High_confidence	19	19	35	1.657593	4.675698	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28321052	28348477	STRG.17930.2	-	28321052,28326831,28332368,28336736,28337936,28338492,28340401,28347584	28324454,28326950,28332427,28336885,28338036,28338615,28340622,28348477	0.828571
esophagus_squamous_epithelium_male_adult_37_years	chr2	48529375	48529386	48529375	+	High_confidence	8	8	15	0.710397	3.664498	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr1	71304060	71304061	71304060	-	RAMPAGE_only	37	39	41	1.941752	3.626200	chr1	71303874	71304242	LTR|ERVL-MaLR|MSTA	-	chr1	71283049	71301947	STRG.3178.1	-	71283049,71288307,71298361,71301882	71284746,71288431,71298516,71301947	0.780488
esophagus_squamous_epithelium_male_adult_37_years	chr8	143018394	143018434	143018394	-	High_confidence	16	16	75	3.551985	5.144670	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.866667
esophagus_squamous_epithelium_male_adult_37_years	chr12	10710653	10710654	10710653	-	High_confidence	12	12	12	0.568318	3.084963	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr11	111097307	111097338	111097307	-	High_confidence	2	2	9	0.426238	2.500000	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr1	238486026	238486034	238486026	-	High_confidence	2	2	7	0.331519	2.584963	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480440	238486023	LINC01139|ENST00000649681.1	-	238480440	238486023	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr19	3062919	3062925	3062922	-	High_confidence	20	23	50	2.367990	4.712581	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.940000
esophagus_squamous_epithelium_male_adult_37_years	chr12	2798775	2798808	2798807	+	High_confidence	6	6	13	0.615677	3.085055	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.846154
esophagus_squamous_epithelium_male_adult_37_years	chr2	173532873	173532932	173532900	+	High_confidence	19	19	97	4.593900	5.836954	chr2	173527289	173533317	LINE|L1|L1PA3	-	chr2	173532865	173698971	STRG.14205.2	+	173532865,173697719	173533339,173698971	0.762887
esophagus_squamous_epithelium_male_adult_37_years	chr9	128684430	128684480	128684476	-	High_confidence	5	5	30	1.420794	4.706891	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128682601	128684907	STRG.52794.1	-	128682601	128684907	0.733333
esophagus_squamous_epithelium_male_adult_37_years	chr1	25820151	25820193	25820192	+	High_confidence	5	5	21	0.994556	3.975418	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.523810
esophagus_squamous_epithelium_male_adult_37_years	chr4	128428038	128428064	128428063	+	High_confidence	2	2	8	0.378878	2.807355	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428069	128519394	AC108062.1|ENST00000511497.5	+	128428069,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519394	0.750000
esophagus_squamous_epithelium_male_adult_37_years	chr9	131121451	131121452	131121451	+	RAMPAGE_only	9	9	10	0.473598	3.169925	chr9	131121449	131121629	SINE|MIR|MIR3	-	chr9	131096550	131123145	AIF1L|ENST00000372300.5	+	131096550,131096801,131111596,131114576,131117755,131120234	131096660,131096863,131111663,131114618,131117847,131123145	0.800000
esophagus_squamous_epithelium_male_adult_37_years	chrX	151958581	151958582	151958581	-	RAMPAGE_only	81	84	89	4.215022	5.356678	chrX	151958580	151958655	DNA|DNA|MER135	-	chrX	151953124	151959723	GABRE|ENST00000486255.1	-	151953124,151955367,151955707	151955084,151955567,151959723	0.943820
esophagus_squamous_epithelium_male_adult_37_years	chr6	43013392	43013393	43013392	-	High_confidence	14	14	15	0.710397	3.664498	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.933333
esophagus_squamous_epithelium_male_adult_37_years	chr9	73163205	73163221	73163205	+	RAMPAGE_only	2	2	6	0.284159	2.584963	chr9	73162911	73163325	LTR|ERVL-MaLR|MSTB1	-	chr9	73160284	73165544	ANXA1|ENST00000489109.1	+	73160284,73160802,73162781,73163475,73165115	73160376,73160893,73162861,73163532,73165544	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr9	92077981	92078034	92078001	-	RAMPAGE_only	5	5	25	1.183995	4.483856	chr9	92072526	92078223	LTR|ERV1|HERVH-int	+	chr9	92028457	92080076	SPTLC1|ENST00000646481.1	-	92028457,92029179,92034809,92038247,92045998,92046274,92047171,92047612,92049959,92055404,92059178,92067965,92076797,92080015	92028757,92029346,92034883,92038365,92046053,92046334,92047268,92047708,92050067,92055494,92059308,92068098,92077035,92080076	0.880000
esophagus_squamous_epithelium_male_adult_37_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	54	54	71	3.362545	5.338082	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.746479
esophagus_squamous_epithelium_male_adult_37_years	chr6	7347491	7347503	7347502	-	RAMPAGE_only	3	3	7	0.331519	2.584963	chr6	7347074	7349650	LINE|L1|L1PB1	+	chr6	7326655	7389390	CAGE1|ENST00000458291.6	-	7326655,7329848,7334021,7355040,7356024,7365467,7365803,7368687,7369918,7373072,7378616,7385784,7386978,7389201	7326899,7329888,7334090,7355111,7356129,7365630,7365884,7368798,7370065,7374131,7379020,7385872,7387196,7389390	0.714286
esophagus_squamous_epithelium_male_adult_37_years	chr5	177883461	177883483	177883472	+	RAMPAGE_only	10	13	43	2.036471	4.433789	chr5	177883451	177883608	SINE|MIR|MIR	+	chr5	177875521	177884272	AC106795.1|ENST00000506672.5	+	177875521,177876531,177878643,177882368,177882651,177883666	177875860,177876688,177878848,177882530,177882752,177884272	0.720930
esophagus_squamous_epithelium_male_adult_37_years	chr14	80278716	80278724	80278717	-	RAMPAGE_only	7	9	17	0.805116	3.750000	chr14	80278355	80278872	LTR|ERVL|MLT2B4	-	chr14	80278428	80315838	DIO2|ENST00000556384.1	-	80278428,80313468,80315773	80278519,80313579,80315838	0.647059
esophagus_squamous_epithelium_male_adult_37_years	chr11	47214673	47214674	47214673	+	High_confidence	6	6	6	0.284159	2.584963	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214569	47234653	DDB2|ENST00000614825.4	+	47214569,47215072,47216335,47216857,47232813,47234572	47214674,47215263,47216472,47217049,47232959,47234653	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr9	123179123	123179221	123179165	-	RAMPAGE_only	4	4	21	0.994556	3.975418	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.761905
esophagus_squamous_epithelium_male_adult_37_years	chr7	55210456	55210458	55210456	+	RAMPAGE_only	6	7	10	0.473598	3.169925	chr7	55210374	55210539	DNA|hAT-Charlie|MER5B	+	chr7	55019150	55211628	STRG.41794.3	+	55019150,55142285,55143304,55146605,55151293,55152545,55154010,55155829,55156532,55156758,55157662,55161498,55163732,55165279,55171174,55172982,55173920,55174721,55181292,55191718,55192765,55198716,55200315,55201187,55201734,55202516,55205255	55019365,55142437,55143488,55146740,55151362,55152664,55154152,55155946,55156659,55156832,55160338,55161631,55163823,55165437,55171213,55173124,55174043,55174820,55181478,55191874,55192841,55198863,55200413,55201355,55201782,55202625,55211628	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr11	17282847	17282887	17282859	+	RAMPAGE_only	4	4	17	0.805116	4.000000	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.823529
esophagus_squamous_epithelium_male_adult_37_years	chr9	121498660	121498666	121498660	-	RAMPAGE_only	5	5	10	0.473598	2.921928	chr9	121498508	121498653	SINE|MIR|MIRb	-	chr9	121444990	121499757	GGTA1P|ENST00000495328.5	-	121444990,121455654,121460103,121461251,121463292,121467842,121479065,121499649	121447597,121455841,121460219,121461317,121463328,121467931,121479334,121499757	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr15	70676500	70676510	70676500	-	RAMPAGE_only	4	4	9	0.426238	2.750000	chr15	70676255	70676461	SINE|MIR|MIRb	-	chr15	70669093	70671973	UACA|ENST00000559290.1	-	70669093,70671038	70669462,70671973	0.777778
esophagus_squamous_epithelium_male_adult_37_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	7	7	10	0.473598	2.947703	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.600000
esophagus_squamous_epithelium_male_adult_37_years	chr1	166850216	166850243	166850242	+	RAMPAGE_only	2	2	8	0.378878	2.521641	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr1	209429126	209429288	209429238	+	High_confidence	34	41	293	13.876419	6.192078	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.798635
esophagus_squamous_epithelium_male_adult_37_years	chr20	44696111	44696112	44696111	-	High_confidence	17	19	21	0.994556	3.997670	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr13	30376953	30376981	30376953	-	High_confidence	22	28	68	3.220466	5.267821	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30375308	30376955	STRG.66479.1	-	30375308,30376826	30375776,30376955	0.558824
esophagus_squamous_epithelium_male_adult_37_years	chr1	25562655	25562703	25562702	+	High_confidence	4	4	8	0.378878	2.750000	chr1	25562741	25562929	SINE|MIR|MIRb	+	chr1	25563633	25567570	LDLRAP1|ENST00000474283.1	+	25563633,25565175,25566847	25563791,25565207,25567570	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr6	3720076	3720077	3720076	-	High_confidence	21	21	29	1.373434	3.655046	chr6	3719558	3721329	LTR|ERV1|LTR12C	-	chr6	3719135	3719984	STRG.34289.1	-	3719135	3719984	0.931034
esophagus_squamous_epithelium_male_adult_37_years	chr1	162781359	162781390	162781359	+	RAMPAGE_only	2	2	10	0.473598	2.947703	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.900000
esophagus_squamous_epithelium_male_adult_37_years	chr2	43277307	43277322	43277317	-	RAMPAGE_only	5	5	14	0.663037	3.180833	chr2	43277189	43277438	LINE|L2|L2	+	chr2	43230850	43570515	THADA|ENST00000407351.5	-	43230850,43232712,43279764,43286907,43291695,43292103,43292833,43320445,43344121,43397970,43485233,43498832,43505621,43508647,43527878,43541158,43549209,43551788,43552203,43556344,43560233,43566697,43570387	43231343,43232882,43279896,43287061,43291768,43292222,43293213,43320540,43344237,43398139,43485325,43498955,43505735,43508780,43527988,43541316,43549368,43551925,43552339,43556555,43560385,43566821,43570515	0.785714
esophagus_squamous_epithelium_male_adult_37_years	chr11	62600168	62600187	62600186	-	High_confidence	4	4	8	0.378878	2.521641	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr10	69385962	69385981	69385980	+	RAMPAGE_only	4	4	9	0.426238	2.503258	chr10	69385985	69386160	SINE|MIR|MIR1_Amn	+	chr10	69318852	69401864	HK1|ENST00000493591.6	+	69318852,69343826,69359896,69364782,69368535,69369236,69369440,69376933,69379861,69382486,69384332,69384795,69386322,69389196,69392124,69394949,69398594,69400990	69319177,69343989,69360045,69364902,69368631,69369336,69369624,69377089,69380095,69382791,69384481,69384915,69386418,69389296,69392308,69395105,69398828,69401864	0.888889
esophagus_squamous_epithelium_male_adult_37_years	chr1	54850872	54850875	54850872	-	RAMPAGE_only	3	3	7	0.331519	2.521641	chr1	54850787	54850913	SINE|MIR|MIR3	-	chr1	54849663	54886890	DHCR24|ENST00000648712.1	-	54849663,54853433,54854036,54865302,54871349,54875092,54875941,54879059,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54879319,54883773,54886890	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr5	23951355	23951384	23951365	+	High_confidence	6	6	29	1.373434	3.856196	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.551724
esophagus_squamous_epithelium_male_adult_37_years	chr3	169447765	169447794	169447789	+	High_confidence	21	21	89	4.215022	5.667266	chr3	169447527	169447947	LINE|L2|L2c	-	chr3	169447866	169477052	LOC105374205|NR_134932.1	+	169447866,169463943,169467033,169470144,169476885	169447935,169464122,169467100,169470197,169477052	0.662921
esophagus_squamous_epithelium_male_adult_37_years	chr7	2242922	2242923	2242922	+	High_confidence	11	11	11	0.520958	3.277613	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr4	158173024	158173025	158173024	-	High_confidence	91	95	124	5.872614	5.846838	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.935484
esophagus_squamous_epithelium_male_adult_37_years	chr17	2975621	2975667	2975660	+	High_confidence	18	22	96	4.546540	5.864474	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975645	3037727	STRG.78049.1	+	2975645,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2975775,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037727	0.729167
esophagus_squamous_epithelium_male_adult_37_years	chr1	195721832	195721833	195721832	+	High_confidence	76	79	87	4.120302	4.799574	chr1	195721489	195721970	LTR|ERVK|LTR14C	-	chr1	195721824	195739016	STRG.6873.1	+	195721824,195738115	195722034,195739016	0.873563
esophagus_squamous_epithelium_male_adult_37_years	chr15	33194695	33194714	33194695	-	High_confidence	2	2	8	0.378878	2.750000	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.625000
esophagus_squamous_epithelium_male_adult_37_years	chr3	193614814	193614855	193614814	+	High_confidence	2	3	10	0.473598	3.121928	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.800000
esophagus_squamous_epithelium_male_adult_37_years	chr7	64999443	64999444	64999443	-	RAMPAGE_only	11	12	14	0.663037	3.546594	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64990808	65006653	ERV3-1|ENST00000394323.2	-	64990808,65006540	64993414,65006653	0.500000
esophagus_squamous_epithelium_male_adult_37_years	chr21	13934440	13934600	13934551	-	RAMPAGE_only	24	24	224	10.608594	5.885297	chr21	13934252	13936999	Retroposon|SVA|SVA_A	-	chr21	13843069	13972129	STRG.89033.1	-	13843069,13845004,13846012,13846758,13879023,13887522,13900823,13907889,13909573,13910495,13911717,13915186,13916746,13917554,13925163,13932227,13939245,13940814,13945038,13951066,13951231,13954065,13969972	13844135,13845274,13846141,13859703,13879217,13891064,13907736,13908028,13909693,13910549,13911763,13915409,13916958,13917836,13925293,13938067,13939428,13940978,13945109,13951139,13951260,13967436,13972129	0.995536
esophagus_squamous_epithelium_male_adult_37_years	chr8	101975324	101975329	101975326	-	RAMPAGE_only	23	29	61	2.888947	5.366698	chr8	101975304	101975478	DNA|hAT-Charlie|MER5A	-	chr8	101687894	102124320	NCALD|ENST00000521599.5	-	101687894,101692790,101719251,101915808,102020236,102029009,102124236	101689406,101692896,101719648,101915858,102020289,102029096,102124320	0.606557
esophagus_squamous_epithelium_male_adult_37_years	chr19	38289157	38289178	38289177	+	High_confidence	2	2	8	0.378878	2.521641	chr19	38289206	38289513	SINE|Alu|AluSc8	+	chr19	38288405	38292468	SPINT2|ENST00000585357.1	+	38288405,38290536	38290280,38292468	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr2	201790589	201790590	201790589	+	High_confidence	7	7	9	0.426238	2.947703	chr2	201790433	201790802	LINE|L2|L2-3_Crp	-	chr2	201790460	201876583	CDK15|ENST00000451080.5	+	201790460,201800783,201806428,201807493,201807852,201812482,201822808,201823664,201833847,201835642,201847380,201854873,201872277,201876523	201790660,201800901,201806547,201807643,201807952,201812562,201822903,201823727,201833971,201835763,201847474,201854937,201872326,201876583	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr4	4269605	4269614	4269613	-	High_confidence	45	51	166	7.861726	4.069073	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.963855
esophagus_squamous_epithelium_male_adult_37_years	chr1	195721888	195721942	195721888	+	High_confidence	3	4	33	1.562873	3.947123	chr1	195721489	195721970	LTR|ERVK|LTR14C	-	chr1	195721824	195739016	STRG.6873.1	+	195721824,195738115	195722034,195739016	0.909091
esophagus_squamous_epithelium_male_adult_37_years	chr7	93114874	93114890	93114881	-	RAMPAGE_only	7	7	27	1.278714	4.430632	chr7	93114834	93115061	LINE|L1|L1MEg2	+	chr7	93102248	93117962	SAMD9|ENST00000446617.1	-	93102248,93117862	93106105,93117962	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr19	15829094	15829095	15829094	+	High_confidence	7	7	7	0.331519	2.521641	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	0.857143
esophagus_squamous_epithelium_male_adult_37_years	chr6	28354199	28354206	28354199	-	High_confidence	7	7	21	0.994556	3.787144	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324736	28354195	ZSCAN31|ENST00000396838.6	-	28324736,28327382,28329302,28336789,28337755,28341745,28353861,28354130	28326854,28327533,28329714,28336943,28337893,28341792,28353952,28354195	0.571429
esophagus_squamous_epithelium_male_adult_37_years	chr4	56657793	56657794	56657793	-	RAMPAGE_only	6	7	8	0.378878	2.521641	chr4	56657736	56657851	SINE|MIR|MIR3	-	chr4	56647997	56656525	HOPX|ENST00000556614.6	-	56647997,56655856,56656343	56648797,56656012,56656525	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr17	4187108	4187109	4187108	-	High_confidence	11	11	15	0.710397	3.640224	chr17	4187012	4187196	LINE|L1|L1PB2	-	chr17	4183525	4187109	ANKFY1|ENST00000574736.1	-	4183525,4183811,4184817,4186893	4183551,4183910,4185046,4187109	0.866667
esophagus_squamous_epithelium_male_adult_37_years	chr19	5848767	5848772	5848767	-	High_confidence	631	636	952	45.086523	6.438929	chr19	5847625	5849489	LTR|ERV1|HERVH-int	+	chr19	5844825	5848771	FUT3|ENST00000587183.1	-	5844825,5846425,5848739	5844851,5846966,5848771	0.711134
esophagus_squamous_epithelium_male_adult_37_years	chr19	2028771	2028777	2028771	-	RAMPAGE_only	4	4	8	0.378878	2.521641	chr19	2028707	2028826	LINE|CR1|L3b	-	chr19	1993154	2034872	BTBD2|ENST00000587742.5	-	1993154,1997343,2017044,2017182,2028707,2034750	1993176,1997463,2017094,2017300,2028834,2034872	0.625000
esophagus_squamous_epithelium_male_adult_37_years	chr9	98943525	98943576	98943575	+	High_confidence	5	6	18	0.852476	3.836592	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	1.000000
esophagus_squamous_epithelium_male_adult_37_years	chr4	56657824	56657848	56657824	-	RAMPAGE_only	2	2	8	0.378878	2.521641	chr4	56657736	56657851	SINE|MIR|MIR3	-	chr4	56647997	56656525	HOPX|ENST00000556614.6	-	56647997,56655856,56656343	56648797,56656012,56656525	0.875000
esophagus_squamous_epithelium_male_adult_37_years	chr22	36481305	36481335	36481334	-	High_confidence	5	5	18	0.852476	3.419382	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.666667
esophagus_squamous_epithelium_male_adult_37_years	chr11	58578102	58578133	58578132	-	High_confidence	16	21	60	2.841588	5.029737	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526888	58578166	STRG.58539.3	-	58526888,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58576733	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.950000
esophagus_squamous_epithelium_male_adult_37_years	chr7	76728643	76728691	76728643	-	High_confidence	3	3	21	0.994556	4.121928	chr7	76728485	76734513	LINE|L1|L1PA3	+	chr7	76696426	76728784	STRG.42751.5	-	76696426,76728465	76697073,76728784	0.619048
esophagus_squamous_epithelium_male_adult_37_years	chr6	36505075	36505091	36505090	-	RAMPAGE_only	22	25	40	1.894392	4.733870	chr6	36505057	36505226	DNA|hAT-Charlie|MER5B	+	chr6	36493891	36522971	STRG.35653.4	-	36493891,36496710,36497779,36498362,36499872,36507499,36515337	36495914,36496805,36497875,36498486,36506644,36507602,36522971	0.925000
esophagus_squamous_epithelium_male_adult_37_years	chr6	31186242	31186263	31186262	-	High_confidence	3	3	8	0.378878	2.807355	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31177131	31186522	STRG.35323.6	-	31177131	31186522	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr12	883791	883830	883829	+	RAMPAGE_only	4	4	28	1.246691	4.280395	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	753055	911300	STRG.68059.4	+	753055,813641,827041,830002,857160,859244,861012,862082,878211,880720,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846,908474	754324,813814,827262,830160,857249,859464,861343,862270,878361,880999,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,908034,911300	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr19	36160697	36160698	36160697	-	High_confidence	28	31	34	1.513839	4.572469	chr19	36160591	36161023	LTR|ERV1|LTR7Y	-	chr19	36158230	36160781	STRG.91869.1	-	36158230,36160431	36158794,36160781	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr17	4187184	4187187	4187184	-	High_confidence	8	10	22	0.979543	3.246439	chr17	4187012	4187196	LINE|L1|L1PB2	-	chr17	4183525	4187109	ANKFY1|ENST00000574736.1	-	4183525,4183811,4184817,4186893	4183551,4183910,4185046,4187109	0.909091
esophagus_squamous_epithelium_male_adult_54_years	chr16	81664304	81664349	81664343	+	RAMPAGE_only	6	6	36	1.602888	3.919382	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.972222
esophagus_squamous_epithelium_male_adult_54_years	chr1	150729911	150729963	150729944	-	High_confidence	3	3	10	0.445247	3.321928	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150646224	150729971	STRG.5591.1	-	150646224,150661813,150663631,150694655,150696991,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150714614,150717137,150719472,150729141,150729573	150648748,150661928,150663763,150694850,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150714678,150717282,150719538,150729225,150729971	0.900000
esophagus_squamous_epithelium_male_adult_54_years	chr5	133089620	133089678	133089677	+	RAMPAGE_only	61	63	166	7.391096	6.263337	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.963855
esophagus_squamous_epithelium_male_adult_54_years	chr9	89479889	89479890	89479889	-	High_confidence	28	28	28	1.246691	4.253434	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89402924	89479890	SEMA4D|ENST00000540475.5	-	89402924,89405350,89455887,89479571	89403016,89405699,89455953,89479890	0.892857
esophagus_squamous_epithelium_male_adult_54_years	chr10	24275185	24275186	24275185	+	RAMPAGE_only	6	6	9	0.400722	3.169925	chr10	24274961	24275280	SINE|Alu|AluJr	-	chr10	24250677	24329034	STRG.59724.21	+	24250677,24297311	24297252,24329034	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr5	148094158	148094206	148094177	+	RAMPAGE_only	12	13	32	1.424790	4.773557	chr5	148094012	148094305	SINE|Alu|AluJo	+	chr5	148090927	148101428	SPINK5|ENST00000476608.1	+	148090927,148091164,148094353,148095817,148097866,148099233,148100453,148101354	148091045,148091228,148094481,148095905,148097994,148099315,148100581,148101428	0.843750
esophagus_squamous_epithelium_male_adult_54_years	chr11	4129090	4129107	4129106	+	RAMPAGE_only	5	5	15	0.667870	3.640224	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr6	24817705	24817706	24817705	-	RAMPAGE_only	7	7	8	0.356197	2.521641	chr6	24811657	24817706	LINE|L1|L1HS	-	chr6	24804324	24910711	RIPOR2|ENST00000538035.6	-	24804324,24809716,24818541,24825225,24828136,24830508,24832255,24835702,24839090,24842861,24848024,24849801,24850596,24852574,24860972,24865300,24869093,24870865,24872880,24873643,24875690,24910547	24806473,24809807,24818625,24825428,24828295,24830670,24832391,24835871,24839272,24843554,24848154,24849950,24850722,24852618,24861036,24865450,24869147,24870889,24872959,24873799,24875817,24910711	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr4	56657791	56657804	56657793	-	RAMPAGE_only	7	8	13	0.578821	3.418296	chr4	56657736	56657851	SINE|MIR|MIR3	-	chr4	56647997	56656525	HOPX|ENST00000556614.6	-	56647997,56655856,56656343	56648797,56656012,56656525	0.769231
esophagus_squamous_epithelium_male_adult_54_years	chr7	87039869	87039870	87039869	-	High_confidence	7	7	7	0.311673	2.521641	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr21	36005319	36005320	36005319	+	High_confidence	4	4	6	0.267148	2.584963	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr19	34860606	34860646	34860633	-	High_confidence	5	6	16	0.712395	2.702820	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.812500
esophagus_squamous_epithelium_male_adult_54_years	chr14	39265919	39265988	39265954	+	High_confidence	37	42	228	10.151626	5.930326	chr14	39265902	39265967	LINE|RTE-BovB|MamRTE1	+	chr14	39265967	39350423	MIA2|ENST00000396165.8	+	39265967,39276933,39279336,39279448,39291018,39293270,39293999,39294924,39299863,39302128,39303477,39304290,39308448,39313339,39314738,39315682,39317943,39319208,39320927,39326863,39345903,39347712,39348742,39350097	39266527,39277065,39279358,39279537,39291096,39293381,39294071,39295029,39299986,39302249,39303524,39304381,39308587,39313441,39314799,39315718,39318011,39319291,39321056,39327022,39346026,39347771,39348977,39350423	0.982456
esophagus_squamous_epithelium_male_adult_54_years	chr11	73217628	73217645	73217644	+	High_confidence	15	15	32	1.424790	4.706891	chr11	73217526	73217658	LINE|L2|L2b	-	chr11	73218297	73242427	P2RY2|NM_176072.2	+	73218297,73227980,73234021	73218432,73228175,73242427	0.937500
esophagus_squamous_epithelium_male_adult_54_years	chr20	44696111	44696112	44696111	-	High_confidence	7	8	8	0.356197	2.521641	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr15	45155466	45155478	45155468	+	RAMPAGE_only	2	4	9	0.400722	2.750000	chr15	45155282	45155589	SINE|Alu|AluSx3	+	chr15	45151828	45160990	DUOX1|ENST00000559716.6	+	45151828,45152285,45153379,45153950,45155801,45160836	45152052,45152516,45153479,45154000,45155929,45160990	0.777778
esophagus_squamous_epithelium_male_adult_54_years	chr9	109086355	109086356	109086355	-	High_confidence	4	4	6	0.267148	2.584963	chr9	109086302	109086485	LINE|L2|L2c	+	chr9	109019903	109087293	TMEM245|ENST00000413712.6	-	109019903,109033306,109036205,109038016,109050282,109050569,109057190,109060353,109064476,109073355,109080838,109087172	109020505,109033501,109036380,109038117,109050428,109050692,109057322,109060452,109064567,109073438,109080943,109087293	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr20	52105663	52105666	52105665	-	High_confidence	10	18	21	0.935018	3.826875	chr20	52105641	52105800	DNA|hAT-Charlie|MER5A1	-	chr20	52084010	52105644	ZFP64|ENST00000371523.8	-	52084010,52088391,52097372,52098437,52105131	52085266,52088643,52097435,52098587,52105644	0.904762
esophagus_squamous_epithelium_male_adult_54_years	chr6	7347466	7347506	7347502	-	High_confidence	7	7	30	1.335740	3.994680	chr6	7347074	7349650	LINE|L1|L1PB1	+	chr6	7301332	7347446	SSR1|ENST00000488834.5	-	7301332,7303549,7309916,7334021,7347371	7301572,7303637,7310029,7334090,7347446	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr14	102083051	102083294	102083165	-	RAMPAGE_only	44	48	336	14.960290	6.621154	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr11	65431602	65432065	65432064	+	RAMPAGE_only	54	55	562	25.022867	6.831146	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65425550	65445540	STRG.65573.5	+	65425550,65437252	65437175,65445540	0.998221
esophagus_squamous_epithelium_male_adult_54_years	chr6	167271319	167271331	167271325	+	RAMPAGE_only	3	4	11	0.489771	3.277613	chr6	167271259	167271341	DNA|hAT-Charlie|MER5A	+	chr6	167291314	167316014	UNC93A|NM_018974.3	+	167291314,167294516,167296031,167297944,167303918,167305914,167307778,167315186	167291576,167294698,167296261,167298070,167304133,167306050,167307910,167316014	0.727273
esophagus_squamous_epithelium_male_adult_54_years	chr12	132782326	132782352	132782326	-	RAMPAGE_only	3	3	16	0.712395	3.773557	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132768914	132805984	STRG.73027.16	-	132768914,132774156,132775140,132776633,132777665,132780797,132784163,132786338,132786692,132789026,132791215,132795851,132796538,132798339,132801766,132804715	132773294,132774320,132775305,132777090,132777805,132780914,132784307,132786555,132786787,132789290,132791293,132796220,132796700,132798477,132801969,132805984	0.937500
esophagus_squamous_epithelium_male_adult_54_years	chr18	31066118	31066119	31066118	-	RAMPAGE_only	5	7	8	0.356197	2.807355	chr18	31066068	31066169	SINE|MIR|MIR	-	chr18	31058839	31102415	DSC2|ENST00000280904.10	-	31058839,31068893,31070725,31071604,31074682,31079846,31080095,31082237,31082925,31086575,31087668,31089438,31091027,31092100,31093558,31101902	31068212,31069151,31070850,31071841,31074907,31079989,31080352,31082423,31083060,31086742,31087813,31089594,31091147,31092300,31093643,31102415	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	31	34	39	1.736462	4.291687	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.717949
esophagus_squamous_epithelium_male_adult_54_years	chrX	44225765	44225793	44225765	-	High_confidence	2	2	11	0.489771	3.277613	chrX	44225702	44225811	SINE|MIR|MIR3	-	chrX	44147881	44225756	EFHC2|ENST00000343571.3	-	44147881,44163921,44176291,44178366,44225684	44148896,44164027,44176384,44178564,44225756	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr11	123060124	123060229	123060168	-	High_confidence	153	158	932	41.496996	5.731747	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.604077
esophagus_squamous_epithelium_male_adult_54_years	chr8	127218869	127219039	127218878	-	High_confidence	84	85	729	32.458487	7.506046	chr8	127218788	127218864	SINE|MIR|MIR	-	chr8	127185606	127218925	CASC19|ENST00000641523.1	-	127185606,127187784,127188044,127202041,127203162,127208605,127208856,127218809	127185770,127187884,127188115,127202152,127203220,127208682,127209717,127218925	0.625514
esophagus_squamous_epithelium_male_adult_54_years	chr6	31186054	31186118	31186117	-	High_confidence	11	11	52	2.315283	4.930837	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31185576	31186433	STRG.38312.4	-	31185576	31186433	0.519231
esophagus_squamous_epithelium_male_adult_54_years	chr9	77944995	77945044	77945043	-	RAMPAGE_only	3	3	13	0.578821	3.418296	chr9	77944910	77945186	DNA|TcMar-Tigger|Tigger19b	+	chr9	77797527	78030604	GNAQ|ENST00000411677.1	-	77797527,77815615,77922160,78030514	77797648,77815770,77922345,78030604	0.615385
esophagus_squamous_epithelium_male_adult_54_years	chr7	114901989	114901990	114901989	-	High_confidence	9	11	13	0.578821	3.584963	chr7	114901652	114902199	LTR|ERVL|MLT2A2	-	chr7	114897415	114901976	STRG.48053.1	-	114897415	114901976	0.538462
esophagus_squamous_epithelium_male_adult_54_years	chr11	33696930	33696974	33696930	-	High_confidence	15	16	62	2.760530	5.683956	chr11	33696789	33697100	LINE|L2|L2a	+	chr11	33668686	33697055	STRG.64672.1	-	33668686,33670914,33696585	33669645,33670979,33697055	0.645161
esophagus_squamous_epithelium_male_adult_54_years	chr9	128684430	128684477	128684459	-	High_confidence	5	5	21	0.935018	4.165894	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683005	128684477	STRG.58460.1	-	128683005	128684477	0.761905
esophagus_squamous_epithelium_male_adult_54_years	chr11	47214673	47214674	47214673	+	High_confidence	5	7	7	0.311673	2.521641	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214569	47234653	DDB2|ENST00000614825.4	+	47214569,47215072,47216335,47216857,47232813,47234572	47214674,47215263,47216472,47217049,47232959,47234653	0.571429
esophagus_squamous_epithelium_male_adult_54_years	chr5	126600248	126600249	126600248	+	High_confidence	21	22	23	1.024068	3.689704	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	0.913043
esophagus_squamous_epithelium_male_adult_54_years	chr19	5848767	5848772	5848767	-	High_confidence	375	383	663	29.519859	6.473315	chr19	5847625	5849489	LTR|ERV1|HERVH-int	+	chr19	5844539	5848905	FUT3|ENST00000587048.1	-	5844539,5846425,5848833	5844851,5846618,5848905	0.624434
esophagus_squamous_epithelium_male_adult_54_years	chr1	32221748	32221771	32221770	+	High_confidence	4	4	11	0.489771	3.459432	chr1	32221596	32221823	SINE|MIR|MIRb	-	chr1	32221927	32226295	EIF3I|ENST00000355082.9	+	32221927,32222357,32222537,32224033,32224409,32226170	32222032,32222444,32222630,32224121,32224475,32226295	0.727273
esophagus_squamous_epithelium_male_adult_54_years	chr6	90886248	90886264	90886263	-	High_confidence	6	9	15	0.667870	3.906891	chr6	90880516	90886330	LINE|L1|L1PB1	-	chr6	90885728	90886267	STRG.40623.1	-	90885728	90886267	0.733333
esophagus_squamous_epithelium_male_adult_54_years	chr11	65440140	65440505	65440305	+	RAMPAGE_only	26	27	567	25.245490	6.443025	chr11	65440323	65440484	SINE|Alu|AluJo	+	chr11	65425550	65445540	STRG.65573.5	+	65425550,65437252	65437175,65445540	0.994709
esophagus_squamous_epithelium_male_adult_54_years	chr2	174410347	174410414	174410371	+	High_confidence	85	88	205	9.127558	4.854426	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.853659
esophagus_squamous_epithelium_male_adult_54_years	chr19	38289175	38289182	38289181	+	High_confidence	3	3	8	0.356197	2.521641	chr19	38289206	38289513	SINE|Alu|AluSc8	+	chr19	38288405	38292468	SPINT2|ENST00000585357.1	+	38288405,38290536	38290280,38292468	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr1	75376210	75376242	75376241	-	High_confidence	5	6	22	0.979543	4.368523	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75201981	75375928	STRG.3585.1	-	75201981,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75203833,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75375928	0.727273
esophagus_squamous_epithelium_male_adult_54_years	chr18	1407205	1407244	1407205	-	High_confidence	2	2	8	0.356197	3.000000	chr18	1407047	1407340	SINE|Alu|AluY	+	chr18	1268310	1407180	LINC00470|ENST00000412816.7	-	1268310,1272441,1275965,1368484,1406986	1269852,1272511,1276077,1368597,1407180	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr11	14337230	14337263	14337249	-	High_confidence	3	3	15	0.667870	3.773557	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.733333
esophagus_squamous_epithelium_male_adult_54_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	8	10	10	0.445247	2.721928	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr1	150484708	150484737	150484708	+	RAMPAGE_only	4	4	13	0.578821	3.700440	chr1	150484697	150484807	LINE|L2|L2b	+	chr1	150487363	150507609	TARS2|NM_001271895.1	+	150487363,150487857,150488963,150490600,150491393,150491597,150492410,150497529,150498501,150498896,150499215,150504334,150504631,150504905,150505590,150506915	150487516,150488054,150489087,150490725,150491511,150491662,150492489,150497747,150498664,150499034,150499293,150504435,150504733,150504978,150505705,150507609	0.692308
esophagus_squamous_epithelium_male_adult_54_years	chr17	59107178	59107211	59107194	+	High_confidence	4	4	16	0.712395	3.456565	chr17	59107089	59107281	DNA|hAT-Charlie|MER5A	-	chr17	59106597	59118267	AC099850.1|ENST00000451775.1	+	59106597,59117923	59107591,59118267	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr2	177499713	177499727	177499713	+	RAMPAGE_only	3	4	7	0.311673	2.584963	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177436983	177543836	STRG.15954.3	+	177436983,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177538073,177540083	177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177540031,177543836	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr20	59971637	59971683	59971662	+	RAMPAGE_only	3	3	13	0.578821	3.251629	chr20	59971600	59971857	LINE|L1|L1ME3G	-	chr20	59968197	60014079	STRG.95602.1	+	59968197,59969783,59971961,59982922,59984638,59985000,59987452,59988903,59992377,59994249,59995832,59996630,59999585,60001342,60002812,60006712,60012526	59969023,59970186,59972123,59983070,59984805,59985129,59987638,59989163,59992520,59994489,59996054,59996761,59999663,60001411,60002866,60006787,60014079	0.846154
esophagus_squamous_epithelium_male_adult_54_years	chr19	17336685	17336686	17336685	+	High_confidence	9	10	13	0.578821	3.418296	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.769231
esophagus_squamous_epithelium_male_adult_54_years	chr9	20658312	20658347	20658338	+	High_confidence	11	12	61	2.716005	4.226666	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658348	20770112	STRG.54491.5	+	20658348,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.918033
esophagus_squamous_epithelium_male_adult_54_years	chr1	9894299	9894341	9894340	-	RAMPAGE_only	15	16	42	1.870036	5.080274	chr1	9894071	9894347	LINE|L1|L1MC4	-	chr1	9850449	9893237	CTNNBIP1|ENST00000377258.5	-	9850449,9871186,9871968,9877904,9893008	9850776,9871277,9872088,9877989,9893237	0.619048
esophagus_squamous_epithelium_male_adult_54_years	chr4	152652536	152652568	152652567	-	RAMPAGE_only	3	4	10	0.445247	3.169925	chr4	152652539	152652595	SINE|5S-Deu-L2|AmnSINE1	+	chr4	152628248	152641425	TMEM154|ENST00000510252.1	-	152628248,152640927	152628561,152641425	0.600000
esophagus_squamous_epithelium_male_adult_54_years	chr10	101368216	101368220	101368219	+	RAMPAGE_only	4	4	10	0.445247	3.169925	chr10	101368004	101368435	LTR|ERVL-MaLR|MSTB1	+	chr10	101354106	101557321	BTRC|ENST00000408038.6	+	101354106,101461980,101479367,101521638,101526012,101531236,101532294,101532951,101534660,101535353,101536542,101538292,101550698,101553154	101354228,101462058,101479457,101521870,101526199,101531333,101532432,101533070,101534910,101535472,101536653,101538371,101550891,101557321	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr9	25265037	25265057	25265037	+	High_confidence	13	14	35	1.558364	3.795825	chr9	25264860	25265298	LTR|ERVL|MLT2A1	+	chr9	25265065	25288725	STRG.54561.1	+	25265065,25288509	25265217,25288725	0.885714
esophagus_squamous_epithelium_male_adult_54_years	chr18	30991793	30991976	30991975	-	RAMPAGE_only	27	29	228	10.151626	5.571331	chr18	30991883	30992175	SINE|Alu|AluY	+	chr18	30990007	31042741	DSC3|ENST00000360428.8	-	30990007,30996790,31001617,31004141,31006906,31008015,31008268,31018070,31018665,31022335,31024348,31025759,31029508,31030972,31032191,31042591	30994372,30997048,31001739,31004366,31007131,31008158,31008525,31018256,31018800,31022502,31024493,31025915,31029628,31031172,31032276,31042741	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr1	153188323	153188329	153188328	-	High_confidence	173	201	280	12.466909	6.414288	chr1	153183386	153189111	LINE|L1|L1PA8	-	chr1	153185920	153188393	STRG.5794.1	-	153185920	153188393	0.989286
esophagus_squamous_epithelium_male_adult_54_years	chr1	1655380	1655410	1655409	-	RAMPAGE_only	6	7	16	0.712395	3.640224	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635737	1658972	STRG.258.5	-	1635737,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1658972	0.937500
esophagus_squamous_epithelium_male_adult_54_years	chr17	2975621	2975667	2975660	+	High_confidence	18	29	121	5.387486	5.843202	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975163	3037738	STRG.84793.3	+	2975163,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2975775,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037738	0.859504
esophagus_squamous_epithelium_male_adult_54_years	chr10	14991196	14991226	14991213	-	High_confidence	4	4	10	0.445247	2.947703	chr10	14990820	14994887	LTR|ERV1|HERVE-int	-	chr10	14990647	14991274	STRG.59444.1	-	14990647,14991093	14990995,14991274	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr20	24930628	24930676	24930628	+	High_confidence	29	29	202	8.993984	5.956201	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930635	24932971	STRG.94531.1	+	24930635,24931346	24930774,24932971	0.960396
esophagus_squamous_epithelium_male_adult_54_years	chr18	31455090	31455091	31455090	+	RAMPAGE_only	10	10	14	0.623345	3.467720	chr18	31455046	31455282	SINE|MIR|MIR	+	chr18	31447794	31497395	STRG.88987.2	+	31447794,31456992,31458444,31459032,31459844,31460832,31461226,31464110,31465317,31466529,31469088,31472283,31472724,31474120,31475645	31456475,31457124,31458600,31459177,31460011,31460961,31461412,31464382,31465457,31466754,31469349,31472423,31472788,31474404,31497395	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr16	68834310	68834355	68834310	+	RAMPAGE_only	3	3	17	0.756919	4.000000	chr16	68834273	68834516	SINE|Alu|AluJr	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.647059
esophagus_squamous_epithelium_male_adult_54_years	chr2	58118802	58118803	58118802	-	High_confidence	429	440	572	25.468113	6.431024	chr2	58118697	58119130	LTR|ERV1|LTR7Y	-	chr2	58095805	58118787	STRG.11588.1	-	58095805	58118787	0.984266
esophagus_squamous_epithelium_male_adult_54_years	chr15	41982984	41983028	41983027	-	RAMPAGE_only	3	3	16	0.712395	3.773557	chr15	41983004	41983277	SINE|Alu|AluSx1	+	chr15	41981583	41990202	STRG.79537.5	-	41981583,41984435,41985838,41987171,41988048,41989414	41983974,41984619,41986005,41987375,41988156,41990202	0.937500
esophagus_squamous_epithelium_male_adult_54_years	chr5	75239372	75239379	75239378	-	High_confidence	36	36	69	3.072203	5.664597	chr5	75238721	75239576	DNA|TcMar-Tigger|MER6	-	chr5	75118164	75239354	STRG.33218.1	-	75118164,75137855,75138845,75144000,75145980,75148575,75154200,75168978,75188492,75192666,75193310,75195630,75199630,75206410,75210827,75222248,75230561,75239240	75118297,75137998,75138983,75144171,75147505,75148628,75154345,75169121,75188648,75192776,75193591,75196200,75199674,75206487,75210865,75222358,75230635,75239354	0.695652
esophagus_squamous_epithelium_male_adult_54_years	chr1	162868814	162868833	162868814	-	High_confidence	6	9	16	0.712395	3.500000	chr1	162868436	162870470	LINE|L1|L1PBa1	+	chr1	162854296	162868815	CCDC190|NM_178550.4	-	162854296,162855631,162859459,162868652	162855359,162855758,162859658,162868815	0.812500
esophagus_squamous_epithelium_male_adult_54_years	chr4	75127212	75127252	75127224	-	High_confidence	30	53	184	8.192540	5.631497	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75082070	75127297	STRG.28100.1	-	75082070,75084588,75121924,75127065	75082357,75084703,75122019,75127297	0.831522
esophagus_squamous_epithelium_male_adult_54_years	chr17	56412556	56412613	56412601	+	RAMPAGE_only	2	2	12	0.534296	3.188722	chr17	56412352	56412894	LTR|ERVL|MLT2A2	+	chr17	56153509	56511659	ANKFN1|ENST00000566473.6	+	56153509,56227916,56326220,56350765,56353835,56372645,56374600,56440326,56442842,56449078,56456860,56457256,56457862,56466355,56477487,56480667,56482355,56492186,56498881,56510472	56153530,56227957,56326355,56350967,56354046,56372840,56374714,56440424,56442933,56449186,56456960,56457389,56457979,56466571,56477654,56480818,56482524,56492353,56499098,56511659	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr4	79206694	79206700	79206694	+	RAMPAGE_only	24	27	40	1.780987	4.733870	chr4	79206338	79206927	LTR|ERV1|LTR10C	+	chr4	79211684	79227886	LINC01088|ENST00000511895.1	+	79211684,79227211	79211804,79227886	0.600000
esophagus_squamous_epithelium_male_adult_54_years	chr4	4269605	4269614	4269613	-	High_confidence	9	11	32	1.424790	2.920764	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.906250
esophagus_squamous_epithelium_male_adult_54_years	chr4	182814507	182814513	182814512	+	High_confidence	6	8	14	0.623345	3.664498	chr4	182814309	182814743	LTR|ERV1|LTR7Y	+	chr4	182814647	182820889	STRG.31188.1	+	182814647	182820889	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr5	117454948	117454963	117454949	+	High_confidence	13	17	32	1.424790	4.567100	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117454972	117471993	STRG.34689.1	+	117454972,117471901	117455454,117471993	0.531250
esophagus_squamous_epithelium_male_adult_54_years	chr16	61918681	61918733	61918732	-	High_confidence	3	3	21	0.935018	3.975418	chr16	61918303	61919817	LINE|L1|L1HS	+	chr16	61901391	61918714	CDH8|ENST00000577228.1	-	61901391,61918257	61901473,61918714	0.523810
esophagus_squamous_epithelium_male_adult_54_years	chr4	184343966	184343968	184343967	-	High_confidence	3	5	7	0.311673	2.521641	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184343541	184343951	STRG.31292.1	-	184343541	184343951	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr3	152875106	152875111	152875106	-	RAMPAGE_only	7	7	13	0.578821	3.238901	chr3	152874934	152875299	LTR|ERVL-MaLR|THE1B	-	chr3	152869969	152873217	STRG.24131.1	-	152869969,152873136	152870503,152873217	0.538462
esophagus_squamous_epithelium_male_adult_54_years	chr7	36420728	36420730	36420729	+	High_confidence	5	7	9	0.400722	3.000000	chr7	36420775	36420884	LINE|L2|L2b	+	chr7	36420223	36426034	ANLN|ENST00000446635.5	+	36420223,36420611,36421856,36422632,36423816,36424544,36424685,36425701,36426014	36420314,36420744,36421992,36422809,36423943,36424593,36424742,36425740,36426034	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chr14	80230352	80230423	80230399	-	High_confidence	12	16	49	2.181709	4.837581	chr14	80225246	80230830	LTR|ERVL|HERVL-int	-	chr14	80202818	80231054	STRG.77390.7	-	80202818,80206230,80211250,80211833	80203288,80206338,80211525,80231054	0.979592
esophagus_squamous_epithelium_male_adult_54_years	chr16	2714754	2714777	2714760	+	High_confidence	3	3	9	0.400722	2.750000	chr16	2714739	2715065	SINE|Alu|AluJo	-	chr16	2714780	2715174	STRG.82081.1	+	2714780	2715174	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr8	12522764	12522776	12522775	+	RAMPAGE_only	3	3	8	0.356197	2.500000	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12564148	12567710	STRG.50021.1	+	12564148	12567710	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr6	137218707	137218726	137218725	-	High_confidence	4	4	11	0.489771	3.321928	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.818182
esophagus_squamous_epithelium_male_adult_54_years	chr12	91179383	91179384	91179383	-	High_confidence	4	4	7	0.311673	2.584963	chr12	91179305	91179397	SINE|MIR|MIRb	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr19	41663296	41663352	41663324	-	High_confidence	71	76	354	15.761735	4.859708	chr19	41663183	41663495	LTR|ERVL-MaLR|THE1B	-	chr19	41631009	41663356	STRG.92350.2	-	41631009,41651501,41663210	41641858,41651631,41663356	0.898305
esophagus_squamous_epithelium_male_adult_54_years	chr19	48596788	48596901	48596900	+	RAMPAGE_only	46	46	370	16.474129	5.145407	chr19	48596922	48597093	SINE|MIR|MIR	+	chr19	48595785	48599423	SULT2B1|ENST00000597923.1	+	48595785,48599134	48596919,48599423	0.997297
esophagus_squamous_epithelium_male_adult_54_years	chr18	31450005	31450031	31450030	+	RAMPAGE_only	22	24	58	2.582431	5.039292	chr18	31449812	31450137	DNA|hAT-Charlie|MER33	+	chr18	31447794	31497395	STRG.88987.2	+	31447794,31456992,31458444,31459032,31459844,31460832,31461226,31464110,31465317,31466529,31469088,31472283,31472724,31474120,31475645	31456475,31457124,31458600,31459177,31460011,31460961,31461412,31464382,31465457,31466754,31469349,31472423,31472788,31474404,31497395	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr3	191359177	191359201	191359200	+	RAMPAGE_only	7	7	12	0.534296	3.095795	chr3	191359182	191359658	LINE|L2|L2c	-	chr3	191361102	191398670	STRG.25499.3	+	191361102,191369918,191380686,191380827,191382745,191389495,191391740	191361159,191380274,191380731,191380932,191382825,191389602,191398670	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chrX	48683362	48683363	48683362	+	High_confidence	9	11	11	0.489771	2.845351	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr8	69356972	69357041	69356972	+	High_confidence	2	2	14	0.623345	3.378783	chr8	69351385	69357434	LINE|L1|L1PA3	-	chr8	69357061	69358715	STRG.51033.1	+	69357061,69358547	69357437,69358715	0.928571
esophagus_squamous_epithelium_male_adult_54_years	chr20	2265052	2265055	2265052	+	High_confidence	7	8	15	0.667870	3.664498	chr20	2264447	2270606	LINE|L1|L1PA6	+	chr20	2265062	2265988	STRG.93796.1	+	2265062	2265988	0.800000
esophagus_squamous_epithelium_male_adult_54_years	chr14	80228198	80228228	80228227	-	RAMPAGE_only	3	3	8	0.356197	2.807355	chr14	80225246	80230830	LTR|ERVL|HERVL-int	-	chr14	80202818	80231054	STRG.77390.7	-	80202818,80206230,80211250,80211833	80203288,80206338,80211525,80231054	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr3	124816469	124816492	124816491	+	High_confidence	24	28	57	2.537906	5.398594	chr3	124816318	124816531	DNA|TcMar-Tigger|Tigger16b	-	chr3	124816499	124827734	STRG.23229.1	+	124816499,124820516,124827659	124816662,124820680,124827734	0.508772
esophagus_squamous_epithelium_male_adult_54_years	chr18	31480335	31480420	31480419	+	RAMPAGE_only	8	8	46	2.048135	4.588354	chr18	31480394	31480473	SINE|MIR|MIRc	-	chr18	31447794	31497395	STRG.88987.2	+	31447794,31456992,31458444,31459032,31459844,31460832,31461226,31464110,31465317,31466529,31469088,31472283,31472724,31474120,31475645	31456475,31457124,31458600,31459177,31460011,31460961,31461412,31464382,31465457,31466754,31469349,31472423,31472788,31474404,31497395	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr2	20217662	20217689	20217688	-	RAMPAGE_only	3	3	9	0.400722	3.169925	chr2	20217521	20217659	SINE|MIR|MIRc	-	chr2	20204001	20223388	SDC1|ENST00000482879.5	-	20204001,20205342,20223202	20204291,20205424,20223388	0.555556
esophagus_squamous_epithelium_male_adult_54_years	chr14	80227931	80227932	80227931	-	RAMPAGE_only	11	12	16	0.712395	3.506891	chr14	80225246	80230830	LTR|ERVL|HERVL-int	-	chr14	80202818	80231054	STRG.77390.7	-	80202818,80206230,80211250,80211833	80203288,80206338,80211525,80231054	0.937500
esophagus_squamous_epithelium_male_adult_54_years	chr11	65432211	65432316	65432211	+	RAMPAGE_only	9	10	78	3.472925	4.560383	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65425550	65445540	STRG.65573.5	+	65425550,65437252	65437175,65445540	0.961538
esophagus_squamous_epithelium_male_adult_54_years	chr16	30729555	30729566	30729555	+	RAMPAGE_only	2	3	7	0.311673	2.521641	chr16	30729600	30729733	LINE|CR1|L3	+	chr16	30732816	30739733	STRG.82898.19	+	30732816,30736199,30736540	30734615,30736394,30739733	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr5	148070162	148070183	148070164	+	RAMPAGE_only	2	4	9	0.400722	2.725481	chr5	148070138	148070208	SINE|MIR|MIR	-	chr5	148064002	148137289	SPINK5|ENST00000256084.7	+	148064002,148065346,148070322,148072147,148086404,148088541,148089493,148091164,148094353,148095817,148097866,148099233,148100453,148101354,148101780,148104951,148107036,148108752,148111767,148112867,148114361,148116369,148118436,148118985,148120008,148120294,148123832,148124764,148125722,148126982,148131258,148133796,148136982	148064099,148065372,148070450,148072220,148086532,148088605,148089621,148091228,148094481,148095905,148097994,148099315,148100581,148101436,148101908,148105000,148107164,148108837,148111895,148112934,148114489,148116466,148118564,148119058,148120136,148120391,148123960,148124837,148125850,148127079,148131389,148133887,148137289	0.555556
esophagus_squamous_epithelium_male_adult_54_years	chr5	136545071	136545072	136545071	-	High_confidence	68	69	71	3.161252	4.499372	chr5	136544967	136545393	LTR|ERV1|LTR7Y	-	chr5	136544050	136545061	STRG.35470.1	-	136544050	136545061	0.943662
esophagus_squamous_epithelium_male_adult_54_years	chr8	81590111	81590170	81590169	-	High_confidence	9	10	41	1.825512	4.734184	chr8	81589985	81590374	DNA|hAT-Charlie|Charlie14a	+	chr8	81526816	81590129	STRG.51615.1	-	81526816,81529437,81531242,81539617,81590052	81527121,81529610,81531373,81539743,81590129	0.951220
esophagus_squamous_epithelium_male_adult_54_years	chr13	22040971	22040972	22040971	+	High_confidence	5	7	8	0.356197	2.807355	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr14	80230907	80230960	80230959	-	High_confidence	2	2	8	0.356197	3.000000	chr14	80230830	80231256	LTR|ERVL|MLT2A1	-	chr14	80197524	80231054	DIO2|NM_000793.5	-	80197524,80211250,80215971,80230900	80203288,80211525,80216150,80231054	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr19	5846466	5846526	5846466	-	RAMPAGE_only	5	7	40	1.780987	3.932818	chr19	5846396	5846476	LINE|L1|L1MB8	+	chr19	5844539	5848905	FUT3|ENST00000587048.1	-	5844539,5846425,5848833	5844851,5846618,5848905	0.925000
esophagus_squamous_epithelium_male_adult_54_years	chr3	14047155	14047206	14047155	-	High_confidence	75	75	138	6.144405	5.671524	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14038564	14047194	STRG.19419.1	-	14038564,14046812	14041628,14047194	0.855072
esophagus_squamous_epithelium_male_adult_54_years	chr5	43307772	43307778	43307774	-	RAMPAGE_only	3	5	10	0.445247	2.725481	chr5	43307757	43307827	SINE|tRNA|LFSINE_Vert	+	chr5	43287469	43313224	HMGCS1|NM_001324219.1	-	43287469,43292473,43292847,43294055,43294690,43295751,43297001,43298008,43298517,43313021	43291220,43292637,43292973,43294162,43294861,43295917,43297166,43298134,43298975,43313224	0.900000
esophagus_squamous_epithelium_male_adult_54_years	chr4	86453398	86453456	86453421	-	High_confidence	4	4	26	1.157642	4.026987	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016085	86453436	MAPK10|ENST00000641170.1	-	86016085,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453436	0.769231
esophagus_squamous_epithelium_male_adult_54_years	chr5	72926306	72926307	72926306	+	High_confidence	42	42	45	2.003610	4.651379	chr5	72925316	72926709	LTR|ERV1|LTR12C	+	chr5	72926306	72933017	STRG.33182.1	+	72926306,72932839	72926749,72933017	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chr19	48994931	48994932	48994931	+	RAMPAGE_only	8	9	9	0.400722	3.169925	chr19	48994647	48994932	SINE|Alu|AluSz	+	chr19	48993909	49009882	RUVBL2|ENST00000593570.5	+	48993909,48999318,49001348,49003278,49004276,49007017,49007301,49009775	48993923,48999373,49001590,49003334,49004418,49007147,49007368,49009882	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chr16	15006403	15006455	15006454	+	RAMPAGE_only	5	5	16	0.712395	3.625000	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	14997747	15038323	PDXDC1|ENST00000450288.3	+	14997747,14998339,15006393,15008778,15009680,15016128,15017119,15017320,15018839,15022703,15026642,15028877,15029950,15031734,15032860,15033277,15034285,15034456,15035448,15036015	14997826,14998405,15006583,15008847,15009759,15016213,15017168,15017422,15018965,15022754,15026706,15028966,15030056,15031906,15032979,15033399,15034378,15034553,15035553,15038323	0.812500
esophagus_squamous_epithelium_male_adult_54_years	chr4	69735188	69735219	69735218	-	RAMPAGE_only	3	3	7	0.311673	2.584963	chr4	69735217	69735388	LINE|L1|L1MDa	+	chr4	69721161	69760712	SULT1B1|ENST00000310613.7	-	69721161,69730500,69733412,69734137,69749720,69754669,69755069,69760458	69727200,69730681,69733507,69734264,69749818,69754798,69755261,69760712	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr6	161307453	161307459	161307458	-	RAMPAGE_only	30	30	51	2.270758	5.001629	chr6	161307117	161307669	LTR|ERVL|MLT2A2	-	chr6	161275292	161315222	STRG.43245.2	-	161275292,161307208,161309620,161314868	161290168,161308590,161312437,161315222	0.607843
esophagus_squamous_epithelium_male_adult_54_years	chr12	104030726	104030727	104030726	+	High_confidence	78	80	101	4.496992	5.963063	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.871287
esophagus_squamous_epithelium_male_adult_54_years	chr15	89498874	89498878	89498877	+	High_confidence	4	4	8	0.356197	3.000000	chr15	89498797	89499018	SINE|MIR|MIRb	-	chr15	89498646	89502123	STRG.81419.1	+	89498646,89500054	89499099,89502123	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr8	100565652	100565707	100565703	-	High_confidence	16	16	36	1.602888	4.516876	chr8	100565495	100565873	LTR|ERVL-MaLR|MLT1A1	-	chr8	100520775	100565687	STRG.52129.3	-	100520775,100527844,100529522,100533208,100565573	100522771,100528003,100529860,100533311,100565687	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr10	84172263	84172268	84172263	-	High_confidence	6	6	14	0.623345	3.093069	chr10	84171986	84172465	LTR|ERV1|LTR2B	-	chr10	84167227	84172093	CERNA2|ENST00000647830.1	-	84167227,84171721	84168729,84172093	0.785714
esophagus_squamous_epithelium_male_adult_54_years	chr15	92914930	92914959	92914930	+	High_confidence	1	2	8	0.356197	2.807355	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr1	201331996	201332281	201332017	+	RAMPAGE_only	28	28	298	13.268353	5.773469	chr1	201331955	201332089	LINE|L2|L2a	-	chr1	201283451	201332993	PKP1|ENST00000367324.7	+	201283451,201293941,201313165,201316552,201317571,201318617,201320266,201321977,201323012,201324427,201324940,201325753,201328761,201330073	201283904,201294045,201313560,201316697,201317779,201318795,201320381,201322133,201323189,201324581,201325127,201325838,201328868,201332993	0.983221
esophagus_squamous_epithelium_male_adult_54_years	chr14	57274833	57274859	57274842	+	RAMPAGE_only	7	7	20	0.890493	3.784184	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr3	14017298	14017310	14017309	+	High_confidence	7	7	25	1.113117	3.863465	chr3	14012549	14017955	LINE|L1|L1PB1	-	chr3	14017266	14064401	TPRXL|ENST00000528067.2	+	14017266,14064024	14017665,14064401	0.760000
esophagus_squamous_epithelium_male_adult_54_years	chr16	67571177	67571205	67571204	+	High_confidence	2	2	6	0.267148	2.584963	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr6	273778	273779	273778	+	High_confidence	6	7	9	0.400722	2.947703	chr6	273768	274070	LTR|ERVL-MaLR|MLT1E2	+	chr6	273656	317374	STRG.37180.6	+	273656,304627,311879	274222,304661,317374	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr1	1655437	1655481	1655480	-	RAMPAGE_only	2	2	8	0.356197	2.807355	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635737	1658972	STRG.258.5	-	1635737,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1658972	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr12	10363964	10363965	10363964	+	High_confidence	37	37	54	2.404332	5.005946	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.703704
esophagus_squamous_epithelium_male_adult_54_years	chr3	188153195	188153210	188153195	+	High_confidence	6	6	15	0.667870	2.872906	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr20	50267467	50267478	50267477	+	High_confidence	7	9	24	1.068592	4.277613	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.916667
esophagus_squamous_epithelium_male_adult_54_years	chr12	56007060	56007062	56007060	+	High_confidence	6	9	10	0.445247	2.725481	chr12	56006930	56007183	LTR|ERV1|MER4A1	+	chr12	56007658	56038435	IKZF4|ENST00000262032.9	+	56007658,56011416,56018125,56019317,56021430,56023670,56025053,56026780,56027779,56032560,56033189,56034570	56007734,56011494,56018177,56019415,56021580,56023764,56025158,56027041,56027947,56032710,56033321,56038435	0.700000
esophagus_squamous_epithelium_male_adult_54_years	chr2	166185025	166185037	166185025	+	RAMPAGE_only	8	9	23	1.024068	4.061482	chr2	166184665	166185205	LINE|L2|L2a	-	chr2	166149180	166294588	AC010127.1|ENST00000630020.2	+	166149180,166171386,166199638,166248194,166249342,166251833,166277087,166294564	166149572,166171558,166199818,166248276,166249384,166251912,166277247,166294588	0.695652
esophagus_squamous_epithelium_male_adult_54_years	chr6	75831746	75831751	75831746	+	RAMPAGE_only	3	4	6	0.267148	2.584963	chr6	75831621	75831911	SINE|Alu|AluJr	+	chr6	75817523	75915177	MYO6|ENST00000627432.2	+	75817523,75822781,75828539,75830415,75832841,75835900,75840584,75841213,75844896,75848350,75855138,75857096,75858901,75861022,75862595,75866525,75866931,75870646,75873206,75879819,75880042,75881688,75886003,75886843,75890056,75891227,75892529,75894813,75895230,75898372,75907604,75908495,75911671,75914062,75914812	75817664,75822851,75828613,75830545,75832947,75835956,75840682,75841378,75844977,75848531,75855283,75857254,75858993,75861095,75862723,75866621,75867105,75870685,75873300,75879950,75880120,75881818,75886094,75886994,75890265,75891306,75892690,75894840,75895260,75898411,75907708,75908627,75911698,75914281,75915177	0.833333
esophagus_squamous_epithelium_male_adult_54_years	chr2	182030808	182030833	182030832	+	High_confidence	4	4	18	0.801444	3.905765	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.722222
esophagus_squamous_epithelium_male_adult_54_years	chr19	51023447	51023483	51023447	-	High_confidence	2	3	12	0.534296	3.251629	chr19	51023384	51023684	SINE|Alu|AluSx	-	chr19	51022235	51024211	KLK11|ENST00000593681.5	-	51022235,51023091,51024044	51022664,51023228,51024211	0.916667
esophagus_squamous_epithelium_male_adult_54_years	chr4	15811823	15811839	15811823	+	RAMPAGE_only	3	3	9	0.400722	3.169925	chr4	15811638	15812162	LTR|ERV1|LTR45	-	chr4	15816595	15840490	CD38|ENST00000510674.1	+	15816595,15824880,15834216,15838091,15840025,15840451	15816640,15824998,15834302,15838165,15840118,15840490	0.555556
esophagus_squamous_epithelium_male_adult_54_years	chr17	75786606	75786627	75786626	+	RAMPAGE_only	18	19	53	2.359808	4.821958	chr17	75786575	75786885	SINE|Alu|AluSq2	+	chr17	75784854	75794198	UNK|ENST00000586527.1	+	75784854,75791759,75792312,75793442	75784984,75792019,75792478,75794198	0.660377
esophagus_squamous_epithelium_male_adult_54_years	chr5	75336556	75336567	75336556	+	High_confidence	3	3	8	0.356197	2.750000	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chrX	45829362	45829389	45829388	-	RAMPAGE_only	3	3	8	0.356197	2.807355	chrX	45829056	45829505	LTR|ERVL-MaLR|MSTB2	-	chrX	45799457	45848623	STRG.99906.10	-	45799457,45837007	45836624,45848623	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chrX	11351651	11351676	11351675	-	RAMPAGE_only	3	3	7	0.311673	2.807355	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.571429
esophagus_squamous_epithelium_male_adult_54_years	chr4	94463222	94463255	94463254	+	RAMPAGE_only	3	3	6	0.267148	2.584963	chr4	94463233	94463679	DNA|TcMar-Tigger|Tigger2	-	chr4	94455266	94618152	STRG.29189.5	+	94455266,94501215,94573350,94575615,94585564,94586407,94618003	94500925,94523875,94573393,94576034,94585737,94586444,94618152	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr19	51027569	51027668	51027667	-	High_confidence	166	179	1239	55.166071	7.687974	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.548023
esophagus_squamous_epithelium_male_adult_54_years	chr6	7426871	7426875	7426874	+	High_confidence	17	17	27	1.202166	4.209867	chr6	7425609	7427287	LTR|ERV1|LTR12C	+	chr6	7426891	7427485	STRG.37718.1	+	7426891	7427485	0.814815
esophagus_squamous_epithelium_male_adult_54_years	chr12	10718669	10718694	10718693	-	High_confidence	8	8	15	0.667870	3.773557	chr12	10718684	10718842	SINE|MIR|MIR3	+	chr12	10701273	10718115	YBX3|ENST00000542641.5	-	10701273,10701959,10704050,10713210,10715693,10718012	10701353,10702134,10704148,10713333,10715783,10718115	0.533333
esophagus_squamous_epithelium_male_adult_54_years	chr4	158173024	158173025	158173024	-	High_confidence	10	11	12	0.534296	3.277613	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.916667
esophagus_squamous_epithelium_male_adult_54_years	chr17	59619888	59619923	59619894	+	High_confidence	558	766	2648	117.901337	6.149119	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.941465
esophagus_squamous_epithelium_male_adult_54_years	chr8	42188943	42188963	42188962	-	High_confidence	5	5	9	0.400722	2.725481	chr8	42188619	42188914	SINE|Alu|AluJo	-	chr8	42184694	42188489	PLAT|ENST00000521647.1	-	42184694,42187905	42187572,42188489	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr8	144427905	144427954	144427943	+	High_confidence	4	7	33	1.469314	4.671781	chr8	144427788	144427946	LINE|L2|L2	-	chr8	144427803	144428440	STRG.53698.1	+	144427803	144428440	0.757576
esophagus_squamous_epithelium_male_adult_54_years	chr16	15798664	15798670	15798664	-	RAMPAGE_only	12	14	23	1.024068	3.975418	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.869565
esophagus_squamous_epithelium_male_adult_54_years	chr18	46868795	46868837	46868836	+	High_confidence	2	2	9	0.400722	3.169925	chr18	46868776	46870333	LTR|ERV1|HERVI-int	+	chr18	46868651	46879214	STRG.89449.2	+	46868651,46868811	46868692,46879214	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr6	92723451	92723512	92723467	-	High_confidence	4	4	45	2.003610	5.118275	chr6	92723324	92725006	LTR|ERV1|LTR12C	+	chr6	92624502	92723829	STRG.40764.3	-	92624502,92723321	92633601,92723829	0.577778
esophagus_squamous_epithelium_male_adult_54_years	chr20	648106	648157	648143	-	RAMPAGE_only	3	5	21	0.935018	3.426367	chr20	648117	648374	LTR|ERVL-MaLR|MLT1J	+	chr20	646614	653370	SRXN1|NM_080725.2	-	646614,652975	648917,653370	0.904762
esophagus_squamous_epithelium_male_adult_54_years	chr5	140651849	140651873	140651849	+	RAMPAGE_only	30	31	153	6.812275	5.732356	chr5	140651884	140651935	DNA|hAT-Charlie|MER5A	+	chr5	140648093	140654727	IK|ENST00000502899.2	+	140648093,140648470,140651713,140652087,140652976,140653937,140654515,140654680	140648162,140648537,140651806,140652147,140653144,140654052,140654586,140654727	0.875817
esophagus_squamous_epithelium_male_adult_54_years	chr16	2759957	2759958	2759957	+	High_confidence	5	5	7	0.311673	2.521641	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr19	571745	571759	571754	-	High_confidence	3	3	11	0.489771	2.646439	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.909091
esophagus_squamous_epithelium_male_adult_54_years	chr12	48489577	48489578	48489577	+	High_confidence	7	7	10	0.445247	2.947703	chr12	48489441	48489716	SINE|Alu|AluSz6	-	chr12	48489549	48496384	STRG.70054.1	+	48489549,48490811,48492946,48494797,48496180	48489864,48490836,48492995,48494979,48496384	0.900000
esophagus_squamous_epithelium_male_adult_54_years	chr11	129642063	129642064	129642063	-	High_confidence	28	36	39	1.736462	4.932138	chr11	129642046	129642130	SINE|MIR|MIR3	-	chr11	129639264	129641436	STRG.67888.1	-	129639264	129641436	0.538462
esophagus_squamous_epithelium_male_adult_54_years	chr4	99852930	99852958	99852930	+	RAMPAGE_only	5	5	9	0.400722	2.947703	chr4	99852809	99853089	LINE|L2|L2b	+	chr4	99816845	99868714	DAPP1|ENST00000512369.1	+	99816845,99835622,99840288,99853217,99861577,99863009,99863769,99866033,99868116	99817014,99835745,99840422,99853348,99861625,99863072,99863855,99866121,99868714	0.555556
esophagus_squamous_epithelium_male_adult_54_years	chr8	129786166	129786178	129786177	-	High_confidence	3	4	8	0.356197	3.000000	chr8	129786052	129786345	SINE|Alu|AluSg7	+	chr8	129751707	129786638	STRG.53356.4	-	129751707,129752697,129760544,129762625,129776101,129777367,129786010	129752147,129752820,129760589,129765793,129776285,129777591,129786638	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr1	100233671	100233672	100233671	-	RAMPAGE_only	11	11	11	0.489771	3.277613	chr1	100233544	100234128	LTR|ERV1|LTR10C	-	chr1	100210542	100249820	DBT|ENST00000370131.3	-	100210542,100214816,100215982,100218625,100230732,100235435,100240760,100249769	100211124,100214983,100216199,100218747,100230914,100235511,100240884,100249820	0.909091
esophagus_squamous_epithelium_male_adult_54_years	chr11	64242499	64242547	64242546	+	High_confidence	5	5	26	1.157642	4.213661	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.961538
esophagus_squamous_epithelium_male_adult_54_years	chr7	74776770	74776797	74776796	+	High_confidence	16	18	41	1.825512	4.703056	chr7	74776760	74777011	SINE|Alu|AluJo	-	chr7	74776788	74789290	STRG.46515.2	+	74776788,74777266,74779081,74779256,74780779,74782938,74783524,74785181,74787983,74788558,74789038	74776853,74777347,74779157,74779422,74780835,74783061,74783632,74785299,74788088,74788704,74789290	0.975610
esophagus_squamous_epithelium_male_adult_54_years	chr21	13934359	13934407	13934359	-	RAMPAGE_only	2	2	14	0.623345	3.334679	chr21	13934252	13936999	Retroposon|SVA|SVA_A	-	chr21	13909573	13979911	ANKRD20A11P|ENST00000451663.5	-	13909573,13910495,13911717,13915186,13916746,13917554,13925163,13927334,13932227,13933837,13937534,13939245,13940814,13945038,13951066,13951231,13954065,13958115,13960808,13967380,13969972,13971166,13975183,13975519,13979701	13909654,13910549,13911763,13915409,13916958,13917836,13925293,13927447,13932374,13934227,13938067,13939428,13940978,13945109,13951139,13951260,13954150,13958185,13960839,13967436,13970110,13971273,13975357,13975634,13979911	0.785714
esophagus_squamous_epithelium_male_adult_54_years	chr7	7566032	7566055	7566054	-	High_confidence	3	3	7	0.311673	2.584963	chr7	7565778	7566082	SINE|Alu|AluSc	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr8	136530760	136530792	136530791	+	High_confidence	3	3	10	0.445247	3.169925	chr8	136530234	136530974	LTR|ERV1|LTR12C	-	chr8	136530770	137092183	LINC02055|ENST00000649576.1	+	136530770,136536977,136789834,136797273,136896984,136961739,137074249,137090409,137091340	136531006,136537059,136789889,136797370,136897078,136961851,137074367,137090503,137092183	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr20	49283405	49283419	49283405	+	RAMPAGE_only	7	7	13	0.578821	3.251629	chr20	49282370	49284126	LTR|ERV1|HERVIP10B3-int	-	chr20	49280484	49289260	STRG.95373.8	+	49280484,49280902	49280570,49289260	0.923077
esophagus_squamous_epithelium_male_adult_54_years	chr10	84172225	84172234	84172225	-	High_confidence	8	13	30	1.335740	4.253236	chr10	84171986	84172465	LTR|ERV1|LTR2B	-	chr10	84167227	84172093	CERNA2|ENST00000647830.1	-	84167227,84171721	84168729,84172093	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr13	29685584	29685599	29685584	+	RAMPAGE_only	23	25	41	1.825512	4.821928	chr13	29685401	29685796	LTR|ERVL-MaLR|MLT1H	+	chr13	29695211	29697862	STRG.73276.1	+	29695211,29697113,29697541	29695930,29697226,29697862	0.829268
esophagus_squamous_epithelium_male_adult_54_years	chr22	29748765	29748766	29748765	-	High_confidence	6	7	7	0.311673	2.584963	chr22	29748740	29748819	DNA|hAT-Charlie|MER5B	+	chr22	29731126	29748641	STRG.97967.3	-	29731126,29731527,29738329,29740649,29742417,29748417	29731354,29731666,29738441,29740730,29742480,29748641	0.571429
esophagus_squamous_epithelium_male_adult_54_years	chr18	31476721	31476825	31476811	+	RAMPAGE_only	30	32	109	4.853189	5.634708	chr18	31476677	31476987	SINE|Alu|AluYb8	+	chr18	31447794	31478702	DSG3|ENST00000257189.4	+	31447794,31456439,31456992,31458444,31459032,31459844,31460832,31461226,31464110,31465317,31466529,31469088,31472283,31472724,31474120,31475645	31447925,31456475,31457124,31458600,31459177,31460011,31460961,31461412,31464382,31465457,31466754,31469349,31472423,31472788,31474404,31478702	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr17	41521744	41521763	41521752	-	High_confidence	4	4	16	0.712395	3.640224	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41513745	41521719	KRT15|ENST00000393976.6	-	41513745,41514648,41515471,41515884,41516103,41516807,41517082,41518329,41519344,41521684	41514120,41514674,41515692,41516010,41516265,41516964,41517165,41519010,41519872,41521719	0.687500
esophagus_squamous_epithelium_male_adult_54_years	chr5	75336467	75336527	75336514	+	High_confidence	17	17	117	5.209387	6.022002	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.931624
esophagus_squamous_epithelium_male_adult_54_years	chr12	10363706	10363707	10363706	+	High_confidence	18	19	22	0.979543	4.221928	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.772727
esophagus_squamous_epithelium_male_adult_54_years	chr4	2936335	2936336	2936335	+	High_confidence	21	23	23	1.024068	4.297079	chr4	2935837	2936474	LTR|ERV1|LTR8	+	chr4	2935545	2951078	NOP14-AS1|NR_015453.2	+	2935545,2938692,2946872,2950152	2938142,2938792,2947120,2951078	0.869565
esophagus_squamous_epithelium_male_adult_54_years	chr18	63589358	63589359	63589358	+	High_confidence	15	17	17	0.756919	3.852169	chr18	63589306	63589451	SINE|Alu|AluSq	+	chr18	63588730	63598743	STRG.89950.5	+	63588730,63589655,63592853,63594354,63595028,63596958	63588832,63592476,63592971,63594497,63595184,63598743	0.764706
esophagus_squamous_epithelium_male_adult_54_years	chr17	82081606	82081716	82081606	-	RAMPAGE_only	14	14	56	2.493382	5.026765	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	0.946429
esophagus_squamous_epithelium_male_adult_54_years	chr15	88635654	88635661	88635654	+	High_confidence	6	6	11	0.489771	3.277613	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.636364
esophagus_squamous_epithelium_male_adult_54_years	chr7	103353930	103353957	103353930	+	High_confidence	5	5	15	0.667870	3.456565	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.866667
esophagus_squamous_epithelium_male_adult_54_years	chr8	56582878	56582879	56582878	+	RAMPAGE_only	7	7	8	0.356197	2.521641	chr8	56582691	56583072	LTR|ERVL-MaLR|MSTA	+	chr8	56588384	56588787	RPL37P6|ENST00000464216.1	+	56588384	56588787	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr12	51568254	51568274	51568260	+	RAMPAGE_only	3	3	9	0.400722	3.169925	chr12	51562631	51568657	LINE|L1|L1HS	-	chr12	51590924	51723140	SCN8A|ENST00000638820.1	+	51590924,51662763,51684173,51686367,51687090,51689004,51699569,51701143,51702772,51705416,51706421,51721545	51590999,51663093,51684292,51686457,51687219,51689096,51699791,51701207,51702914,51705623,51706715,51723140	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr11	94121430	94121431	94121430	+	RAMPAGE_only	4	4	7	0.311673	2.584963	chr11	94118737	94123646	LTR|ERV1|HERV9-int	+	chr11	94115793	94181966	STRG.66815.5	+	94115793,94126156,94153490,94174313,94178368,94179601,94180789	94126135,94129493,94153630,94175888,94178592,94180257,94181966	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr9	116838676	116838690	116838676	+	RAMPAGE_only	2	2	7	0.311673	2.584963	chr9	116838426	116838730	SINE|Alu|AluSq2	-	chr9	116837659	116853749	STRG.57831.3	+	116837659,116841428	116839021,116853749	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr1	39310254	39310305	39310294	+	RAMPAGE_only	3	5	14	0.623345	3.392747	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr17	32479853	32479870	32479860	+	High_confidence	3	3	10	0.445247	2.947703	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.700000
esophagus_squamous_epithelium_male_adult_54_years	chr9	112220306	112220332	112220306	-	RAMPAGE_only	3	3	10	0.445247	3.321928	chr9	112220284	112220372	SINE|Alu|AluJb	+	chr9	112217714	112333026	PTBP3|NM_001244898.1	-	112217714,112224132,112227410,112228379,112231379,112232098,112234819,112250928,112252677,112262434,112268048,112275843,112297840,112332783	112223983,112224210,112227627,112228472,112231413,112232238,112234897,112251103,112252788,112262599,112268195,112276013,112297916,112333026	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr21	13935294	13935335	13935294	-	RAMPAGE_only	4	5	17	0.756919	3.452820	chr21	13934252	13936999	Retroposon|SVA|SVA_A	-	chr21	13901340	13979993	STRG.95906.8	-	13901340,13907889,13909573,13910495,13911717,13915186,13916746,13917554,13925163,13932227,13933311,13939245,13940814,13943743,13945038,13951066,13951231,13954065,13958115,13962739,13967380,13969972,13979701	13907736,13908028,13909693,13910549,13911763,13915409,13916958,13917836,13925293,13932374,13938067,13939428,13940978,13943862,13945109,13951139,13951260,13954150,13958185,13962871,13967436,13972057,13979993	0.941176
esophagus_squamous_epithelium_male_adult_54_years	chr12	6529030	6529034	6529031	+	RAMPAGE_only	3	5	9	0.400722	2.947703	chr12	6529076	6529291	SINE|MIR|MIRb	+	chr12	6494131	6531966	NCAPD2|NM_014865.3	+	6494131,6495075,6509716,6510074,6510628,6511109,6514264,6514463,6514772,6516827,6517364,6517595,6517778,6520985,6521797,6522827,6523261,6525582,6526067,6526286,6526447,6526890,6527776,6527967,6528172,6528678,6528944,6529512,6529774,6530690,6530920,6531326	6494154,6495225,6509792,6510133,6510810,6511252,6514392,6514587,6514920,6517025,6517499,6517683,6517959,6521110,6522037,6523002,6523346,6525716,6526200,6526371,6526615,6527063,6527888,6528091,6528328,6528856,6529039,6529593,6529958,6530817,6531076,6531966	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr7	158863388	158863401	158863388	+	RAMPAGE_only	6	9	20	0.890493	4.037401	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr18	31452425	31452463	31452462	+	RAMPAGE_only	4	4	21	0.935018	2.946439	chr18	31452238	31452545	SINE|Alu|AluSc	+	chr18	31447794	31497395	STRG.88987.2	+	31447794,31456992,31458444,31459032,31459844,31460832,31461226,31464110,31465317,31466529,31469088,31472283,31472724,31474120,31475645	31456475,31457124,31458600,31459177,31460011,31460961,31461412,31464382,31465457,31466754,31469349,31472423,31472788,31474404,31497395	0.952381
esophagus_squamous_epithelium_male_adult_54_years	chr10	65570509	65570522	65570521	+	High_confidence	8	15	43	1.914561	4.880180	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570525	65586204	STRG.60756.1	+	65570525,65571424,65572934,65585484	65570759,65571579,65573056,65586204	0.627907
esophagus_squamous_epithelium_male_adult_54_years	chr7	93114805	93114816	93114805	-	RAMPAGE_only	7	8	15	0.667870	3.640224	chr7	93114451	93114819	LINE|L1|L1ME3	+	chr7	93102248	93117962	SAMD9|ENST00000446617.1	-	93102248,93117862	93106105,93117962	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr17	76773073	76773097	76773096	+	High_confidence	8	8	16	0.712395	3.189898	chr17	76772816	76773304	LINE|L1|L1MEc	-	chr17	76773096	76778338	MFSD11|ENST00000590070.1	+	76773096,76774996,76776405,76778187	76773351,76775171,76776541,76778338	0.937500
esophagus_squamous_epithelium_male_adult_54_years	chr9	62897430	62897431	62897430	+	High_confidence	14	14	18	0.801444	2.927451	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chr18	31450089	31450305	31450089	+	RAMPAGE_only	16	16	123	5.476535	6.151456	chr18	31449812	31450137	DNA|hAT-Charlie|MER33	+	chr18	31447794	31497395	STRG.88987.2	+	31447794,31456992,31458444,31459032,31459844,31460832,31461226,31464110,31465317,31466529,31469088,31472283,31472724,31474120,31475645	31456475,31457124,31458600,31459177,31460011,31460961,31461412,31464382,31465457,31466754,31469349,31472423,31472788,31474404,31497395	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr17	59107121	59107126	59107121	+	High_confidence	2	2	8	0.356197	2.521641	chr17	59107089	59107281	DNA|hAT-Charlie|MER5A	-	chr17	59106597	59118267	AC099850.1|ENST00000451775.1	+	59106597,59117923	59107591,59118267	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr3	9973632	9973648	9973632	-	RAMPAGE_only	3	3	11	0.489771	3.321928	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.909091
esophagus_squamous_epithelium_male_adult_54_years	chr21	13846057	13846074	13846073	-	RAMPAGE_only	3	3	8	0.356197	2.807355	chr21	13845763	13846089	LTR|ERVL|LTR16C	-	chr21	13843132	13848364	CYP4F29P|ENST00000428301.1	-	13843132,13844021,13845004,13846012,13846758,13848089	13843432,13844135,13845274,13846141,13846949,13848364	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr5	34244805	34244826	34244825	-	RAMPAGE_only	3	4	14	0.623345	3.039149	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34218343	AC138409.2|ENST00000507274.1	-	34175821,34179012,34182679,34218294	34175957,34179097,34182867,34218343	0.571429
esophagus_squamous_epithelium_male_adult_54_years	chr13	106574779	106574783	106574782	+	High_confidence	13	18	24	1.068592	4.251629	chr13	106574585	106575011	LTR|ERVL-MaLR|THE1C	+	chr13	106574682	106602520	STRG.74911.1	+	106574682	106602520	0.958333
esophagus_squamous_epithelium_male_adult_54_years	chr12	118020938	118020956	118020938	+	RAMPAGE_only	3	3	9	0.400722	2.725481	chr12	118020805	118020941	LINE|CR1|L3	+	chr12	118024915	118027392	RFC5|ENST00000472603.1	+	118024915,118025746,118026888	118025010,118025828,118027392	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chr12	53464773	53464829	53464788	+	RAMPAGE_only	3	4	23	1.024068	3.936260	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.956522
esophagus_squamous_epithelium_male_adult_54_years	chr17	47067498	47067513	47067498	-	High_confidence	52	54	164	7.302047	5.311719	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.951220
esophagus_squamous_epithelium_male_adult_54_years	chr19	3136820	3136911	3136835	-	High_confidence	53	56	280	12.466909	5.149278	chr19	3136742	3136815	SINE|MIR|MIRc	-	chr19	3136025	3136917	STRG.90472.4	-	3136025	3136917	0.989286
esophagus_squamous_epithelium_male_adult_54_years	chr7	135699756	135699762	135699756	-	RAMPAGE_only	11	12	34	1.513839	4.312500	chr7	135699616	135699841	SINE|MIR|MIRb	+	chr7	135699363	135705807	SLC13A4|ENST00000480376.1	-	135699363,135701679,135702844,135705595	135699548,135701760,135702884,135705807	0.911765
esophagus_squamous_epithelium_male_adult_54_years	chr4	15918726	15918732	15918726	+	High_confidence	2	4	10	0.445247	3.169925	chr4	15918465	15918778	LINE|L2|L2b	+	chr4	15919413	15919753	STRG.26818.1	+	15919413	15919753	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr1	150729223	150729246	150729245	-	High_confidence	3	3	7	0.311673	2.584963	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150646224	150729971	STRG.5591.1	-	150646224,150661813,150663631,150694655,150696991,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150714614,150717137,150719472,150729141,150729573	150648748,150661928,150663763,150694850,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150714678,150717282,150719538,150729225,150729971	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr17	13931138	13931152	13931151	-	RAMPAGE_only	5	5	12	0.534296	3.584963	chr17	13931030	13931624	LTR|ERVL-MaLR|MLT1L	+	chr17	13776831	13892839	COX10-AS1|ENST00000577798.6	-	13776831,13790268,13865078,13880301,13892724	13777349,13790313,13865266,13880371,13892839	0.583333
esophagus_squamous_epithelium_male_adult_54_years	chr7	101308293	101308325	101308299	+	High_confidence	41	52	214	9.528280	6.223174	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.915888
esophagus_squamous_epithelium_male_adult_54_years	chr17	4187108	4187146	4187108	-	High_confidence	54	54	88	3.918171	4.746592	chr17	4187012	4187196	LINE|L1|L1PB2	-	chr17	4183525	4187109	ANKFY1|ENST00000574736.1	-	4183525,4183811,4184817,4186893	4183551,4183910,4185046,4187109	0.886364
esophagus_squamous_epithelium_male_adult_54_years	chr9	20658568	20658627	20658626	+	High_confidence	3	3	22	0.979543	4.106603	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658348	20770112	STRG.54491.5	+	20658348,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.681818
esophagus_squamous_epithelium_male_adult_54_years	chr8	101975326	101975329	101975326	-	High_confidence	9	11	23	1.024068	4.297079	chr8	101975304	101975478	DNA|hAT-Charlie|MER5A	-	chr8	101692865	101975329	NCALD|ENST00000520690.5	-	101692865,101719251,101915808,101975259	101692896,101719648,101915858,101975329	0.521739
esophagus_squamous_epithelium_male_adult_54_years	chr1	162868913	162868914	162868913	-	High_confidence	6	6	9	0.400722	2.750000	chr1	162868436	162870470	LINE|L1|L1PBa1	+	chr1	162851315	162868815	CCDC190|ENST00000367912.6	-	162851315,162855086,162855631,162859459,162868652	162853161,162855359,162855755,162859658,162868815	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chr3	48430180	48430190	48430189	-	High_confidence	3	4	8	0.356197	3.000000	chr3	48430133	48430258	SINE|MIR|MIRb	+	chr3	48403853	48430051	PLXNB1|ENST00000296440.10	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48430007	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48430051	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr20	45115985	45115997	45115996	-	High_confidence	5	5	10	0.445247	2.947703	chr20	45115930	45116060	SINE|MIR|MIR3	-	chr20	45109451	45116327	STRG.95200.1	-	45109451,45110399,45110634,45114998,45115319,45116173	45110013,45110540,45110775,45115127,45115525,45116327	0.800000
esophagus_squamous_epithelium_male_adult_54_years	chr2	156455606	156455623	156455622	+	RAMPAGE_only	2	2	6	0.267148	2.584963	chr2	156455639	156455884	LINE|L2|L2c	+	chr2	156473571	156583058	GPD2|ENST00000409674.5	+	156473571,156476097,156496043,156510795,156512219,156513332,156549607,156550601,156557388,156568824,156569362,156570086,156571133,156578888,156579085,156579689,156582792	156473636,156476207,156496215,156510920,156512317,156513496,156549772,156550746,156557582,156568959,156569538,156570218,156571292,156579001,156579164,156579788,156583058	0.833333
esophagus_squamous_epithelium_male_adult_54_years	chrX	107156143	107156192	107156166	-	RAMPAGE_only	5	7	27	1.202166	4.606739	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.629630
esophagus_squamous_epithelium_male_adult_54_years	chr6	10691014	10691015	10691014	+	High_confidence	86	88	91	4.051745	5.696857	chr6	10691063	10691105	SINE|MIR|MIRc	+	chr6	10690695	10706359	STRG.37574.4	+	10690695,10697323,10702368,10702564,10704506,10704746	10691319,10697486,10702489,10703457,10704652,10706359	0.648352
esophagus_squamous_epithelium_male_adult_54_years	chr20	13493335	13493393	13493387	+	High_confidence	20	23	84	3.740073	5.889923	chr20	13493277	13493787	LTR|ERVL|MLT2B3	+	chr20	13493388	13498422	STRG.94216.1	+	13493388,13496078	13493705,13498422	0.809524
esophagus_squamous_epithelium_male_adult_54_years	chrX	120143500	120143501	120143500	+	RAMPAGE_only	13	13	13	0.578821	3.546594	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120036235	120146854	RHOXF1-AS1|ENST00000553843.5	+	120036235,120120851,120138997,120143722,120145637	120036532,120121139,120139119,120143900,120146854	0.846154
esophagus_squamous_epithelium_male_adult_54_years	chr16	72627651	72627696	72627651	-	RAMPAGE_only	4	4	33	1.469314	4.680758	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.515152
esophagus_squamous_epithelium_male_adult_54_years	chr8	61578141	61578142	61578141	+	High_confidence	25	25	25	1.113117	3.923856	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr20	18794077	18794086	18794085	+	High_confidence	12	12	28	1.246691	3.610577	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr7	131108707	131108708	131108707	-	High_confidence	8	8	8	0.356197	3.000000	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130983515	131108930	STRG.48489.8	-	130983515,131052424,131107719	130984109,131052555,131108930	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr5	53036192	53036199	53036198	-	High_confidence	4	5	8	0.356197	2.807355	chr5	53036079	53036820	LINE|L2|L2a	+	chr5	53026393	53036198	STRG.32542.1	-	53026393,53035637,53036151	53026480,53035773,53036198	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr1	209651124	209651146	209651135	-	High_confidence	6	6	15	0.667870	3.521641	chr1	209651125	209651277	SINE|MIR|MIR3	+	chr1	209614869	209651334	LAMB3|NM_001017402.1	-	209614869,209616470,209617409,209617906,209618451,209622535,209622981,209623504,209623839,209625647,209626866,209627382,209628034,209629736,209630614,209632582,209633069,209634446,209637907,209638533,209649963,209650916	209615407,209616624,209617586,209618048,209618659,209622680,209623179,209623725,209624000,209626026,209626978,209627579,209628190,209629925,209630735,209632776,209633133,209634638,209637981,209638648,209650118,209651334	0.933333
esophagus_squamous_epithelium_male_adult_54_years	chr13	109272198	109272203	109272202	+	RAMPAGE_only	49	51	84	3.740073	5.621674	chr13	109271794	109272374	LTR|ERV1|LTR9	+	chr13	109269633	109273838	AL161431.1|ENST00000618966.1	+	109269633	109273838	0.916667
esophagus_squamous_epithelium_male_adult_54_years	chr9	123179128	123179131	123179130	-	RAMPAGE_only	5	8	10	0.445247	2.947703	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.900000
esophagus_squamous_epithelium_male_adult_54_years	chr2	187520535	187520581	187520535	+	High_confidence	9	9	31	1.380265	4.518397	chr2	187517160	187520609	LINE|L1|L1P3	-	chr2	187520564	187521088	STRG.16522.1	+	187520564	187521088	0.516129
esophagus_squamous_epithelium_male_adult_54_years	chr6	2881285	2881286	2881285	-	High_confidence	24	25	25	1.113117	4.251629	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.960000
esophagus_squamous_epithelium_male_adult_54_years	chr10	103749811	103749819	103749811	+	RAMPAGE_only	2	2	6	0.267148	2.584963	chr10	103749613	103750051	LTR|ERVL-MaLR|MLT1F	+	chr10	103746792	103754466	SH3PXD2A-AS1|ENST00000625265.1	+	103746792,103749781,103753843	103747096,103749920,103754466	0.833333
esophagus_squamous_epithelium_male_adult_54_years	chr20	8600698	8600739	8600707	+	High_confidence	19	19	63	2.805054	4.393420	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.841270
esophagus_squamous_epithelium_male_adult_54_years	chr17	4852448	4852463	4852448	+	RAMPAGE_only	28	28	52	2.315283	4.887658	chr17	4852316	4852553	LINE|L2|L2c	-	chr17	4833620	4885965	MINK1|ENST00000577021.1	+	4833620,4878316,4880983,4881113,4884362,4884911,4885482,4885910	4833640,4878382,4881040,4881257,4884473,4885002,4885613,4885965	0.961538
esophagus_squamous_epithelium_male_adult_54_years	chr12	55930641	55930642	55930641	+	High_confidence	7	8	8	0.356197	2.521641	chr12	55930357	55930665	SINE|Alu|AluSc8	-	chr12	55930971	55954015	DGKA|ENST00000331886.9	+	55930971,55936422,55937016,55937407,55937977,55938510,55938914,55939185,55939414,55940081,55940313,55940623,55940896,55941251,55941509,55941997,55942173,55951622,55952034,55952340,55952733,55953039,55953349,55953684	55931344,55936567,55937090,55937543,55938052,55938560,55938989,55939305,55939529,55940170,55940433,55940722,55940980,55941325,55941584,55942083,55942263,55951783,55952099,55952431,55952932,55953160,55953410,55954015	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr1	212232522	212232523	212232522	-	RAMPAGE_only	113	133	148	6.589652	6.002874	chr1	212232282	212232732	LTR|ERVL|MLT2A2	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	0.932432
esophagus_squamous_epithelium_male_adult_54_years	chr3	50816074	50816147	50816074	+	RAMPAGE_only	3	4	23	1.024068	3.762267	chr3	50815749	50816183	LTR|ERV1|LTR54B	-	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.652174
esophagus_squamous_epithelium_male_adult_54_years	chr11	71745875	71745915	71745898	+	High_confidence	37	37	226	10.062576	5.927128	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.946903
esophagus_squamous_epithelium_male_adult_54_years	chr20	3208662	3208686	3208675	+	High_confidence	2	3	8	0.356197	2.521641	chr20	3208670	3208727	DNA|hAT-Charlie|MER5A	-	chr20	3208867	3223870	ITPA|ENST00000483354.5	+	3208867,3213168,3213984,3215280,3218516,3221840,3223365	3209033,3213226,3214058,3215312,3218632,3221917,3223870	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr4	177445145	177445149	177445148	+	High_confidence	5	5	9	0.400722	2.750000	chr4	177444910	177445732	LTR|ERV1|LTR1A2	+	chr4	177444978	177452085	STRG.31077.3	+	177444978,177451493	177445443,177452085	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr17	18721865	18721877	18721865	+	High_confidence	5	5	11	0.489771	2.845351	chr17	18721345	18721943	LTR|ERV1|MER4B	-	chr17	18721776	18731213	TRIM16L|ENST00000573443.5	+	18721776,18722236,18727524,18731069	18721862,18722332,18727758,18731213	0.909091
esophagus_squamous_epithelium_male_adult_54_years	chr12	10362459	10362460	10362459	+	RAMPAGE_only	16	16	22	0.979543	4.011365	chr12	10362140	10362659	LTR|ERV1|LTR10C	+	chr12	10363642	10380814	STRG.68593.1	+	10363642,10374034,10379701	10364033,10374136,10380814	0.590909
esophagus_squamous_epithelium_male_adult_54_years	chr1	150510229	150510248	150510232	+	RAMPAGE_only	2	2	11	0.489771	3.121928	chr1	150510233	150510382	SINE|MIR|MIRb	+	chr1	150508093	150510552	ECM1|ENST00000496744.5	+	150508093,150509530,150509660,150510101	150508279,150509581,150510002,150510552	0.545455
esophagus_squamous_epithelium_male_adult_54_years	chr20	37297344	37297345	37297344	+	High_confidence	6	7	9	0.400722	2.750000	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.777778
esophagus_squamous_epithelium_male_adult_54_years	chr5	112109370	112109383	112109382	-	High_confidence	9	10	22	0.979543	4.221928	chr5	112109260	112109715	LTR|ERVL|LTR16A1	+	chr5	112107890	112109371	STRG.34472.1	-	112107890	112109371	0.818182
esophagus_squamous_epithelium_male_adult_54_years	chr14	81192654	81192682	81192654	-	RAMPAGE_only	4	4	18	0.801444	3.683542	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr2	48362653	48362680	48362679	+	RAMPAGE_only	3	3	6	0.267148	2.584963	chr2	48362726	48363918	DNA|TcMar-Tigger|Tigger3b	+	chr2	48346216	48375565	FOXN2|ENST00000616844.1	+	48346216,48346532,48359046,48362642,48373291,48374919	48346530,48346751,48359147,48362707,48373360,48375565	0.833333
esophagus_squamous_epithelium_male_adult_54_years	chr7	48201585	48201623	48201585	+	RAMPAGE_only	2	2	9	0.400722	2.750000	chr7	48201458	48201731	SINE|Alu|AluSg	+	chr7	48171465	48646283	STRG.45731.2	+	48171465,48192958,48198236,48219353,48221280,48227261,48229824,48234017,48239240,48240866,48244575,48245511,48245862,48248238,48249211,48268979,48271786,48278093,48287959,48295699,48297231,48298365,48309946,48313066,48314231,48317156,48335421,48338364,48350642,48352180,48367793,48372167,48374346,48376440,48387821,48389039,48391920,48403682,48410519,48412352,48427765,48455036,48466955,48471529,48481035,48483075,48489235,48506335,48507871,48511083,48516724,48520040,48524247,48528235,48580223,48587153,48594709,48615284,48643287,48644616,48645416	48171552,48193052,48198360,48219505,48221309,48227425,48229955,48234151,48239405,48241066,48244703,48245612,48246030,48248444,48249351,48269094,48276565,48281452,48288078,48295863,48297311,48298487,48310141,48313231,48314409,48317296,48335535,48338455,48350819,48352487,48367908,48372497,48374416,48376572,48387959,48389220,48392139,48403879,48410677,48412583,48427871,48455286,48467045,48471599,48481154,48483163,48489344,48506390,48508049,48511199,48516881,48520294,48524440,48528345,48580374,48587288,48594813,48615377,48643393,48644754,48646283	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr10	118541171	118541172	118541171	+	High_confidence	6	6	9	0.400722	2.500000	chr10	118540964	118541407	LTR|ERVL|MLT2A2	+	chr10	118541734	118542198	STRG.62771.1	+	118541734	118542198	0.555556
esophagus_squamous_epithelium_male_adult_54_years	chr11	57793708	57793778	57793708	+	RAMPAGE_only	2	2	21	0.935018	3.576618	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57781602	57796584	CTNND1|ENST00000530068.5	+	57781602,57791491,57794009,57795576,57796456	57781646,57791673,57794081,57795729,57796584	0.619048
esophagus_squamous_epithelium_male_adult_54_years	chr20	31565857	31565858	31565857	+	High_confidence	14	15	18	0.801444	4.087463	chr20	31565825	31565966	DNA|hAT-Charlie|MER5A	+	chr20	31566153	31569567	HM13|ENST00000487281.1	+	31566153,31567639,31569119	31566295,31567806,31569567	0.833333
esophagus_squamous_epithelium_male_adult_54_years	chr5	95509594	95509600	95509594	-	RAMPAGE_only	5	6	10	0.445247	2.947703	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	0.900000
esophagus_squamous_epithelium_male_adult_54_years	chr2	31197967	31197997	31197967	-	RAMPAGE_only	3	3	12	0.534296	3.022055	chr2	31197581	31198028	LTR|ERVL-MaLR|MLT1C	+	chr2	31162147	31217519	STRG.10738.5	-	31162147,31176586,31187757,31188317,31189272,31191934,31193130,31194408,31197248,31200450,31201861,31203069,31205222,31217455	31174707,31186485,31187814,31188354,31191407,31192098,31193294,31194483,31199532,31200625,31202252,31203139,31205499,31217519	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr10	6737336	6737415	6737341	+	High_confidence	7	8	49	2.181709	5.119513	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.979592
esophagus_squamous_epithelium_male_adult_54_years	chr4	81153835	81153867	81153866	-	High_confidence	3	3	8	0.356197	3.000000	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81087369	81153732	PRKG2|ENST00000545647.5	-	81087369,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153429,81153643	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153555,81153732	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr1	179877281	179877290	179877289	-	High_confidence	3	3	8	0.356197	2.521641	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179843930	179877772	STRG.6998.3	-	179843930,179847534,179850844,179852631,179856057,179877238,179877692	179846828,179847636,179851363,179852811,179865854,179877373,179877772	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr2	73982163	73982169	73982163	-	High_confidence	11	11	30	1.335740	3.923231	chr2	73982060	73982404	LINE|L2|L2c	-	chr2	73957966	73981439	DGUOK-AS1|NR_104030.1	-	73957966,73981134	73958207,73981439	0.933333
esophagus_squamous_epithelium_male_adult_54_years	chr15	89483383	89483384	89483383	-	RAMPAGE_only	5	5	8	0.356197	2.521641	chr15	89483291	89483437	SINE|MIR|MIRb	+	chr15	89471397	89496571	RHCG|ENST00000560081.5	-	89471397,89472721,89476754,89477081,89477516,89477836,89479321,89480260,89483066,89486798,89496360	89471855,89472863,89476828,89477206,89477577,89477974,89479488,89480408,89483217,89486985,89496571	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr17	11971943	11971954	11971953	+	High_confidence	7	7	21	0.935018	4.037401	chr17	11971755	11972189	LTR|ERV1|LTR7Y	+	chr17	11971928	11977000	STRG.85314.1	+	11971928,11973569,11976500	11972335,11974418,11977000	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr5	34244750	34244781	34244780	-	High_confidence	3	3	10	0.445247	2.725481	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr17	40396284	40396285	40396284	-	RAMPAGE_only	8	9	9	0.400722	3.000000	chr17	40395985	40396271	SINE|Alu|AluSx1	-	chr17	40388515	40417950	TOP2A|ENST00000423485.5	-	40388515,40389964,40391505,40392067,40392217,40392584,40395448,40396282,40398557,40398772,40399039,40399871,40400208,40400528,40400849,40402905,40404151,40404376,40404790,40406383,40406583,40406831,40407548,40407966,40408491,40411108,40411353,40411644,40412758,40413194,40413479,40416004,40416421,40416739,40417770	40389647,40390164,40391640,40392111,40392341,40392737,40395539,40396465,40398641,40398937,40399131,40400067,40400409,40400663,40401081,40403054,40404273,40404491,40404883,40406493,40406689,40406942,40407674,40408124,40408630,40411246,40411455,40411818,40412971,40413292,40413625,40416068,40416512,40416895,40417950	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chrX	107155879	107155880	107155879	-	RAMPAGE_only	13	13	19	0.845969	4.058814	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.789474
esophagus_squamous_epithelium_male_adult_54_years	chr19	9700673	9700674	9700673	-	High_confidence	1653	1783	1860	82.815894	5.430005	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9685828	9700672	STRG.90771.31	-	9685828,9696093,9700387	9694867,9696248,9700672	0.878495
esophagus_squamous_epithelium_male_adult_54_years	chr21	13934492	13934502	13934492	-	RAMPAGE_only	5	5	10	0.445247	3.169925	chr21	13934252	13936999	Retroposon|SVA|SVA_A	-	chr21	13909573	13979911	ANKRD20A11P|ENST00000451663.5	-	13909573,13910495,13911717,13915186,13916746,13917554,13925163,13927334,13932227,13933837,13937534,13939245,13940814,13945038,13951066,13951231,13954065,13958115,13960808,13967380,13969972,13971166,13975183,13975519,13979701	13909654,13910549,13911763,13915409,13916958,13917836,13925293,13927447,13932374,13934227,13938067,13939428,13940978,13945109,13951139,13951260,13954150,13958185,13960839,13967436,13970110,13971273,13975357,13975634,13979911	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr10	84172094	84172095	84172094	-	High_confidence	149	155	188	8.370639	5.341727	chr10	84171986	84172465	LTR|ERV1|LTR2B	-	chr10	84167227	84172093	CERNA2|ENST00000647830.1	-	84167227,84171721	84168729,84172093	0.707447
esophagus_squamous_epithelium_male_adult_54_years	chr3	12840669	12840697	12840696	-	High_confidence	2	2	6	0.267148	2.584963	chr3	12840594	12840703	SINE|MIR|MIRc	+	chr3	12834944	12840450	RPL32|NM_001007074.1	-	12834944,12839348,12840141	12836223,12839530,12840450	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr19	51018587	51018596	51018587	-	High_confidence	4	4	11	0.489771	3.321928	chr19	51018434	51018728	SINE|Alu|AluYc	+	chr19	51014509	51018849	KLK10|ENST00000601467.1	-	51014509,51015416,51015881,51017109,51018454	51014952,51015550,51016156,51017290,51018849	0.909091
esophagus_squamous_epithelium_male_adult_54_years	chr3	6577879	6577904	6577879	+	High_confidence	2	2	8	0.356197	2.807355	chr3	6577703	6578255	LTR|ERVL|MLT2B2	+	chr3	6578052	6578822	STRG.19031.1	+	6578052	6578822	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr1	153967484	153967512	153967486	+	High_confidence	6	9	24	1.068592	3.849224	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr10	110835177	110835200	110835177	+	High_confidence	3	3	7	0.311673	2.521641	chr10	110835193	110835289	SINE|MIR|MIR	+	chr10	110835177	110836258	RBM20|ENST00000465774.2	+	110835177,110835867	110835691,110836258	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr20	31566028	31566084	31566083	+	High_confidence	44	44	291	12.956680	6.455368	chr20	31566028	31566111	SINE|MIR|MIR3	+	chr20	31566153	31569567	HM13|ENST00000487281.1	+	31566153,31567639,31569119	31566295,31567806,31569567	0.886598
esophagus_squamous_epithelium_male_adult_54_years	chr19	46203082	46203083	46203082	-	High_confidence	455	470	490	21.817090	5.309737	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.757143
esophagus_squamous_epithelium_male_adult_54_years	chr3	73808585	73808586	73808585	+	High_confidence	50	50	53	2.359808	4.963856	chr3	73808390	73808744	LTR|ERVL-MaLR|THE1A	+	chr3	73808600	73902866	LINC02005|ENST00000498832.1	+	73808600,73869775,73878805,73902530	73808668,73869961,73878997,73902866	0.566038
esophagus_squamous_epithelium_male_adult_54_years	chr2	58113211	58113248	58113211	+	High_confidence	41	42	98	4.363418	5.480838	chr2	58113028	58113330	SINE|Alu|AluSg	+	chr2	58112484	58159784	STRG.11585.5	+	58112484,58123100,58131807,58135140,58139665,58146315,58154753,58159348	58113510,58123233,58131928,58135199,58139832,58146474,58154802,58159784	0.897959
esophagus_squamous_epithelium_male_adult_54_years	chr5	140700445	140700452	140700445	+	High_confidence	767	984	2033	90.518662	4.885313	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.984752
esophagus_squamous_epithelium_male_adult_54_years	chr5	93756155	93756167	93756155	-	RAMPAGE_only	4	4	12	0.534296	3.418296	chr5	93755381	93761065	LINE|L1|L1PB1	+	chr5	93618068	94111635	FAM172A|ENST00000395965.7	-	93618068,93776158,93784382,93824147,93881469,93958776,93964457,94050730,94053125,94074645,94111510	93621129,93776243,93784499,93824267,93881688,93958968,93964523,94050831,94053227,94074769,94111635	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr12	91179456	91179463	91179462	-	High_confidence	843	864	1407	62.646216	7.209817	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.552239
esophagus_squamous_epithelium_male_adult_54_years	chrX	151969670	151969725	151969674	-	RAMPAGE_only	6	6	19	0.845969	4.037401	chrX	151969485	151969626	LINE|RTE-X|L5	-	chrX	151955396	151974664	STRG.102908.3	-	151955396,151955707,151959838,151961282,151962422,151969668,151970184,151971139	151955567,151959149,151959976,151961365,151962643,151969736,151970402,151974664	0.789474
esophagus_squamous_epithelium_male_adult_54_years	chr16	48570146	48570147	48570146	-	RAMPAGE_only	6	6	6	0.267148	2.584963	chr16	48569695	48570346	LINE|L1|L1MD2	-	chr16	48546181	48610209	STRG.83153.2	-	48546181,48548006,48551385,48553538,48560753,48585785	48546254,48548114,48551482,48553669,48585442,48610209	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr2	171433056	171433064	171433056	-	High_confidence	4	4	8	0.356197	2.807355	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr11	62600186	62600216	62600186	-	High_confidence	3	3	13	0.578821	3.584963	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.769231
esophagus_squamous_epithelium_male_adult_54_years	chr19	9690004	9690131	9690066	-	RAMPAGE_only	5	5	56	2.493382	3.634931	chr19	9689758	9690159	LTR|ERVL|HERVL40-int	-	chr19	9685828	9700672	STRG.90771.28	-	9685828,9693908,9694778,9696093,9700387	9693820,9693995,9694867,9696248,9700672	0.964286
esophagus_squamous_epithelium_male_adult_54_years	chr5	176411456	176411459	176411458	-	RAMPAGE_only	714	862	1127	50.179308	6.645321	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176383980	176416538	STRG.36867.1	-	176383980,176385220,176386839,176388234,176388432,176397606,176397929,176410256,176416176	176384283,176385327,176386909,176388343,176392945,176397718,176398047,176410303,176416538	0.929902
esophagus_squamous_epithelium_male_adult_54_years	chr2	190353526	190353579	190353578	+	RAMPAGE_only	3	3	10	0.445247	2.921928	chr2	190353541	190353779	SINE|MIR|MIRb	-	chr2	190356516	190366895	INPP1|ENST00000409027.1	+	190356516,190360038,190362626,190366694	190356617,190360306,190362687,190366895	0.900000
esophagus_squamous_epithelium_male_adult_54_years	chr22	50757212	50757248	50757247	+	High_confidence	19	19	50	2.226234	4.943465	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.660000
esophagus_squamous_epithelium_male_adult_54_years	chr6	160788571	160788572	160788571	+	High_confidence	94	94	101	4.496992	4.576515	chr6	160788117	160788698	LTR|ERV1|LTR10C	+	chr6	160788577	160792559	STRG.43203.1	+	160788577	160792559	0.960396
esophagus_squamous_epithelium_male_adult_54_years	chr3	194091461	194091523	194091522	+	High_confidence	7	8	29	1.291216	4.323161	chr3	194091478	194091540	SINE|MIR|MIR3	-	chr3	194091639	194092014	STRG.25532.1	+	194091639	194092014	0.931034
esophagus_squamous_epithelium_male_adult_54_years	chr9	73154458	73154532	73154503	+	RAMPAGE_only	9	19	71	3.161252	4.911324	chr9	73154423	73154738	SINE|Alu|AluSz6	-	chr9	73151901	73160338	ANXA1|ENST00000415424.5	+	73151901,73154197,73158521,73158694,73159328,73160262	73151924,73154340,73158601,73158803,73159423,73160338	0.619718
esophagus_squamous_epithelium_male_adult_54_years	chr2	55654885	55654916	55654915	-	RAMPAGE_only	2	3	7	0.311673	2.584963	chr2	55654742	55654866	SINE|Alu|AluJr	-	chr2	55636369	55647382	PNPT1|ENST00000481066.1	-	55636369,55637551,55640626,55643157,55643318,55644636,55646258,55646414,55647346	55636392,55637599,55640705,55643213,55643425,55645432,55646322,55646486,55647382	0.571429
esophagus_squamous_epithelium_male_adult_54_years	chr3	139344535	139344548	139344547	+	High_confidence	338	339	675	30.054155	5.970696	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.946667
esophagus_squamous_epithelium_male_adult_54_years	chr7	135706448	135706457	135706448	-	High_confidence	11	12	36	1.602888	4.530493	chr7	135706429	135706508	LINE|L2|L2c	+	chr7	135699363	135705807	SLC13A4|ENST00000480376.1	-	135699363,135701679,135702844,135705595	135699548,135701760,135702884,135705807	0.972222
esophagus_squamous_epithelium_male_adult_54_years	chrX	107155919	107155943	107155942	-	RAMPAGE_only	2	4	8	0.356197	2.521641	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr17	11972082	11972083	11972082	+	High_confidence	963	994	1183	52.672689	7.212208	chr17	11971755	11972189	LTR|ERV1|LTR7Y	+	chr17	11971928	11977000	STRG.85314.3	+	11971928,11973569	11972335,11977000	0.666948
esophagus_squamous_epithelium_male_adult_54_years	chr4	9102693	9102705	9102693	+	High_confidence	2	2	7	0.311673	2.584963	chr4	9097916	9105755	LTR|ERV1|HERVE-int	+	chr4	9103474	9104050	STRG.26366.1	+	9103474	9104050	0.571429
esophagus_squamous_epithelium_male_adult_54_years	chr2	113117970	113117976	113117970	+	High_confidence	16780	21307	37801	1683.077200	7.532930	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117980	113133121	STRG.13768.3	+	113117980,113127688,113129575,113131044,113132655	113118028,113127740,113129664,113131157,113133121	0.675062
esophagus_squamous_epithelium_male_adult_54_years	chr4	67923106	67923124	67923106	-	RAMPAGE_only	10	11	22	0.979543	4.121928	chr4	67922948	67923336	LINE|L2|L2c	+	chr4	67911309	67946564	TMPRSS11A|ENST00000513536.5	-	67911309,67914587,67918972,67922754,67929879,67931992,67944518,67946449	67911503,67914730,67919232,67922926,67930040,67932060,67944595,67946564	0.909091
esophagus_squamous_epithelium_male_adult_54_years	chr16	50396877	50396897	50396877	-	High_confidence	13	18	31	1.380265	4.760648	chr16	50396540	50397080	LTR|ERVL|MLT2A2	-	chr16	50395296	50396955	STRG.83155.1	-	50395296,50396626	50395739,50396955	0.580645
esophagus_squamous_epithelium_male_adult_54_years	chr1	212232428	212232458	212232436	-	RAMPAGE_only	3	3	11	0.489771	3.277613	chr1	212232282	212232732	LTR|ERVL|MLT2A2	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr14	88748437	88748458	88748437	-	RAMPAGE_only	2	2	6	0.267148	2.584963	chr14	88747842	88749662	LINE|L1|L1MEc	+	chr14	88615817	88792503	EML5|ENST00000380664.9	-	88615817,88616141,88616725,88618227,88618649,88620753,88621112,88622603,88624969,88626837,88627645,88634468,88638808,88642892,88644432,88657375,88658186,88661653,88663030,88664492,88665336,88681889,88685014,88687215,88688270,88694306,88695360,88696846,88702445,88704859,88705481,88706258,88712270,88714938,88726540,88736363,88738878,88740386,88744022,88746184,88754511,88792306	88615854,88616242,88616879,88618331,88618812,88620926,88621301,88622718,88625127,88627046,88627819,88634489,88638907,88643022,88644511,88657502,88658388,88661830,88663119,88664624,88665489,88682031,88685142,88687327,88688473,88694407,88695454,88696952,88702632,88704978,88705588,88706426,88712483,88715195,88726678,88736565,88739014,88740572,88744091,88746283,88754671,88792503	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr15	34588450	34588453	34588450	-	RAMPAGE_only	7	10	13	0.578821	3.180833	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34379067	34437466	GOLGA8A|NR_027409.1	-	34379067,34381700,34381967,34382150,34382385,34382796,34383440,34383745,34383960,34385047,34385253,34385426,34385739,34386624,34389643,34391122,34398633,34399154,34400711,34404916,34406673,34407523,34435382,34437397	34381613,34381856,34382068,34382251,34382529,34383053,34383528,34383853,34384047,34385157,34385338,34385474,34385778,34387952,34389768,34391426,34398729,34399203,34400759,34405055,34406870,34407735,34435471,34437466	0.769231
esophagus_squamous_epithelium_male_adult_54_years	chr11	4127225	4127248	4127247	+	RAMPAGE_only	3	3	12	0.534296	3.277613	chr11	4127295	4127736	LTR|ERVL-MaLR|MLT1D	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.833333
esophagus_squamous_epithelium_male_adult_54_years	chr18	9588171	9588197	9588171	-	RAMPAGE_only	3	3	11	0.489771	2.846439	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9577063	9595061	STRG.88386.7	-	9577063,9584514,9584720,9588088,9588710,9593767,9595017	9583275,9584580,9584828,9588235,9588853,9593874,9595061	0.909091
esophagus_squamous_epithelium_male_adult_54_years	chr2	73072177	73072210	73072209	-	High_confidence	4	6	17	0.756919	3.750000	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.588235
esophagus_squamous_epithelium_male_adult_54_years	chr17	28234002	28234046	28234030	-	RAMPAGE_only	2	2	11	0.489771	2.521928	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.909091
esophagus_squamous_epithelium_male_adult_54_years	chr7	56056373	56056412	56056398	+	RAMPAGE_only	2	2	8	0.356197	2.750000	chr7	56056444	56056752	SINE|Alu|AluSq2	+	chr7	56051684	56063989	CCT6A|NM_001009186.1	+	56051684,56052421,56055623,56056310,56057992,56058361,56058619,56059543,56060268,56060806,56061746,56062682,56063012	56051985,56052485,56055797,56056414,56058103,56058521,56058702,56059640,56060416,56060940,56061849,56062755,56063989	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr3	37058831	37058909	37058906	-	RAMPAGE_only	10	11	70	3.116727	4.452139	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr4	182814636	182814637	182814636	+	High_confidence	919	937	990	44.079427	5.886234	chr4	182814309	182814743	LTR|ERV1|LTR7Y	+	chr4	182814647	182820889	STRG.31188.1	+	182814647	182820889	0.976768
esophagus_squamous_epithelium_male_adult_54_years	chr1	54200489	54200569	54200568	+	High_confidence	4	5	37	1.647413	4.607706	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.756757
esophagus_squamous_epithelium_male_adult_54_years	chr4	67839329	67839330	67839329	-	RAMPAGE_only	8	8	11	0.489771	3.277613	chr4	67839174	67839316	LINE|L2|L2a	-	chr4	67833301	67884001	TMPRSS11D|ENST00000508409.5	-	67833301,67835082,67838171,67839015,67842557,67854067,67883925	67833340,67835121,67838329,67839058,67842625,67854186,67884001	0.636364
esophagus_squamous_epithelium_male_adult_54_years	chr5	34949215	34949264	34949238	+	RAMPAGE_only	4	4	18	0.801444	3.419382	chr5	34948874	34949661	LINE|L1|L1MC4a	+	chr5	34930062	34955018	DNAJC21|ENST00000642285.1	+	34930062,34933814,34935709,34936143,34937325,34938857,34941095,34944866,34945721,34949542,34950169,34953925,34954552	34930361,34933908,34935833,34936266,34937630,34939009,34941183,34945025,34945803,34949677,34950342,34954001,34955018	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr13	29685624	29685667	29685635	+	RAMPAGE_only	4	4	10	0.445247	2.646439	chr13	29685401	29685796	LTR|ERVL-MaLR|MLT1H	+	chr13	29695211	29697862	STRG.73276.1	+	29695211,29697113,29697541	29695930,29697226,29697862	0.900000
esophagus_squamous_epithelium_male_adult_54_years	chr18	46868643	46868644	46868643	+	High_confidence	432	432	448	19.947054	7.072133	chr18	46868192	46868774	LTR|ERV1|LTR10B1	+	chr18	46868651	46879214	STRG.89449.3	+	46868651	46879214	0.964286
esophagus_squamous_epithelium_male_adult_54_years	chr4	184855628	184855653	184855649	-	RAMPAGE_only	4	5	15	0.667870	3.664498	chr4	184855538	184855766	LTR|ERVL-MaLR|MLT1J1	-	chr4	184843295	184847046	MIR3945HG|NR_037867.1	-	184843295,184846895	184846534,184847046	0.733333
esophagus_squamous_epithelium_male_adult_54_years	chr2	71417084	71417097	71417084	+	RAMPAGE_only	2	2	7	0.311673	2.584963	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr3	134485481	134485498	134485481	-	High_confidence	2	2	8	0.356197	2.521641	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr5	126594172	126594191	126594172	-	High_confidence	2	2	7	0.311673	2.584963	chr5	126594110	126594228	LINE|L2|L2b	-	chr5	126568039	126594318	ALDH7A1|ENST00000511266.6	-	126568039,126570781,126575419,126577078,126582850,126583931,126592663,126593350	126568356,126570859,126575464,126577211,126582974,126584012,126592729,126594318	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr1	209428979	209429118	209429050	+	High_confidence	8	9	74	3.294826	5.145457	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429082	209430621	MIR205HG|ENST00000444286.1	+	209429082,209430424	209429408,209430621	0.581081
esophagus_squamous_epithelium_male_adult_54_years	chr11	72758533	72758553	72758552	-	High_confidence	6	6	14	0.623345	2.653544	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72759309	STARD10|ENST00000537351.5	-	72754728,72755121,72755700,72757766,72758529,72759233	72754782,72755142,72755753,72757884,72758633,72759309	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr18	7946878	7946879	7946878	+	High_confidence	7	7	9	0.400722	3.000000	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946883	8343616	STRG.88322.2	+	7946883,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8143646,8244057,8247844,8253226,8296367,8314780,8319177,8343422	7946977,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8143779,8244209,8247919,8253414,8296455,8314857,8319214,8343616	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chr12	64293377	64293380	64293379	-	High_confidence	47	99	111	4.942239	5.621956	chr12	64287349	64293377	LINE|L1|L1PA2	-	chr12	64266982	64293383	C12orf56|ENST00000536975.5	-	64266982,64270535,64274900,64275297,64277679,64284663,64285953,64293280	64267288,64270714,64274975,64275372,64277803,64284753,64286060,64293383	0.900901
esophagus_squamous_epithelium_male_adult_54_years	chr1	9088374	9088375	9088374	-	High_confidence	4	5	6	0.267148	2.584963	chr1	9087911	9088393	LTR|ERV1|HERVFH19-int	+	chr1	9047610	9088443	SLC2A5|ENST00000464985.5	-	9047610,9057447,9058151,9069503,9085013,9088371	9047734,9057608,9058250,9069594,9085142,9088443	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr13	99065740	99065741	99065740	-	RAMPAGE_only	7	7	9	0.400722	2.947703	chr13	99065554	99065902	LINE|L2|L2c	+	chr13	98793486	99086406	DOCK9|NM_015296.2	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,99086222	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,99086406	0.555556
esophagus_squamous_epithelium_male_adult_54_years	chr7	48104891	48104923	48104905	+	High_confidence	4	4	9	0.400722	2.750000	chr7	48104893	48105542	LINE|L1|L1M8	+	chr7	48104645	48108415	UPP1|ENST00000495446.1	+	48104645,48107360,48108217	48107082,48107507,48108415	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chr12	119179261	119179297	119179296	+	High_confidence	3	3	16	0.712395	3.589898	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr1	111192178	111192196	111192178	-	RAMPAGE_only	2	2	8	0.356197	3.000000	chr1	111191905	111192139	SINE|MIR|MIRb	-	chr1	111187173	111189328	DENND2D|ENST00000468692.1	-	111187173,111188130,111188701,111189211	111187681,111188370,111188786,111189328	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr8	143281639	143281687	143281678	-	High_confidence	5	5	24	1.068592	4.088779	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143281069	143281665	MINCR|ENST00000524335.1	-	143281069,143281481	143281384,143281665	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr5	171989439	171989463	171989439	-	RAMPAGE_only	2	2	10	0.445247	3.121928	chr5	171989194	171989878	LINE|L1|L1MC5a	+	chr5	171861551	172006640	FBXW11|ENST00000265094.9	-	171861551,171868609,171869728,171870747,171872871,171876284,171878010,171891466,171899003,171899913,171910571,171957596,172006457	171864101,171868796,171869807,171870858,171872990,171876534,171878129,171891604,171899094,171900100,171910797,171957698,172006640	0.700000
esophagus_squamous_epithelium_male_adult_54_years	chr6	161314897	161314913	161314912	-	High_confidence	4	4	12	0.534296	3.095795	chr6	161310158	161315114	LTR|ERV1|HERVIP10FH-int	-	chr6	161275292	161315222	STRG.43245.5	-	161275292,161307208	161290168,161315222	0.916667
esophagus_squamous_epithelium_male_adult_54_years	chr11	66906225	66906226	66906225	+	High_confidence	5	5	7	0.311673	2.584963	chr11	66906209	66906357	LINE|L2|L2a	-	chr11	66906437	66906671	STRG.65564.1	+	66906437	66906671	0.571429
esophagus_squamous_epithelium_male_adult_54_years	chrX	123648852	123648853	123648852	+	High_confidence	37	41	50	2.226234	4.853308	chrX	123648005	123654416	LINE|L1|L1PA7	+	chrX	123649103	123649391	STRG.102298.1	+	123649103	123649391	0.780000
esophagus_squamous_epithelium_male_adult_54_years	chr22	28663274	28663284	28663283	+	High_confidence	4	6	15	0.667870	3.378783	chr22	28663283	28669315	LINE|L1|L1HS	+	chr22	28663284	28663998	STRG.97831.1	+	28663284	28663998	0.533333
esophagus_squamous_epithelium_male_adult_54_years	chr3	3963490	3963520	3963490	-	High_confidence	4	4	13	0.578821	3.180833	chr3	3963076	3969110	LINE|L1|L1HS	+	chr3	3960737	3963210	STRG.18889.1	-	3960737,3963057	3961699,3963210	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr9	116838440	116838472	116838466	+	High_confidence	19	21	74	3.294826	5.287307	chr9	116838426	116838730	SINE|Alu|AluSq2	-	chr9	116838143	116877264	AL157829.1|ENST00000648160.1	+	116838143,116841428,116842381,116870198,116876607	116839290,116841517,116842517,116870244,116877264	0.891892
esophagus_squamous_epithelium_male_adult_54_years	chr6	106881880	106881883	106881882	+	High_confidence	4	8	8	0.356197	2.750000	chr6	106881857	106882150	SINE|Alu|AluSq2	+	chr6	106882752	106883227	STRG.40945.1	+	106882752	106883227	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr7	2242922	2242923	2242922	+	High_confidence	36	36	36	1.602888	4.437577	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr13	74442980	74442989	74442980	+	RAMPAGE_only	8	8	18	0.801444	3.725481	chr13	74442973	74443195	DNA|hAT-Charlie|MER30	+	chr13	74419157	74444735	LINC00381|ENST00000649990.1	+	74419157,74426092,74434502,74443159,74444097	74419228,74426418,74434622,74443284,74444735	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr4	142474262	142474263	142474262	-	High_confidence	8	8	9	0.400722	2.750000	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.777778
esophagus_squamous_epithelium_male_adult_54_years	chr3	33838246	33838281	33838256	+	RAMPAGE_only	14	15	29	1.291216	4.606739	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.655172
esophagus_squamous_epithelium_male_adult_54_years	chr6	118651542	118651602	118651563	-	High_confidence	11	11	57	2.537906	5.288279	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.929825
esophagus_squamous_epithelium_male_adult_54_years	chr3	59046985	59047040	59046985	-	RAMPAGE_only	5	5	24	1.068592	3.351227	chr3	59046635	59047050	LINE|L2|L2	-	chr3	58887345	59049759	C3orf67|ENST00000479931.5	-	58887345,58912565,58913707,58937647,59039556,59046228,59047164,59049610	58887439,58912742,58913864,58937762,59039629,59046322,59047254,59049759	0.833333
esophagus_squamous_epithelium_male_adult_54_years	chr7	7566514	7566538	7566525	-	High_confidence	4	4	21	0.935018	3.521928	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.761905
esophagus_squamous_epithelium_male_adult_54_years	chr8	12488581	12488621	12488620	-	High_confidence	107	107	754	33.571604	7.233981	chr8	12485575	12493402	LTR|ERV1|HERVE-int	-	chr8	12485009	12488643	STRG.49985.3	-	12485009,12488233	12487908,12488643	0.950928
esophagus_squamous_epithelium_male_adult_54_years	chr8	53523820	53523863	53523862	-	High_confidence	5	5	12	0.534296	3.584963	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr12	71710373	71710427	71710373	-	High_confidence	43	58	137	6.099880	4.853292	chr12	71710184	71710714	LTR|ERV1|LTR78	-	chr12	71709170	71710374	AC011601.1|ENST00000549710.1	-	71709170,71710231	71709604,71710374	0.503650
esophagus_squamous_epithelium_male_adult_54_years	chr12	122218272	122218273	122218272	-	High_confidence	6	6	6	0.267148	2.584963	chr12	122218031	122218232	DNA|hAT-Charlie|MER58A	-	chr12	122208315	122218289	DIABLO|ENST00000439489.6	-	122208315,122209696,122216487,122216758,122218265	122208577,122209858,122216584,122216869,122218289	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr17	41503913	41504126	41504022	-	RAMPAGE_only	16	19	155	6.901324	5.604146	chr17	41503757	41503990	DNA|hAT-Charlie|MER30	-	chr17	41500980	41505597	KRT13|ENST00000246635.7	-	41500980,41501718,41502373,41502686,41502936,41503286,41503642,41505055	41501362,41501744,41502594,41502812,41503098,41503443,41503725,41505597	0.645161
esophagus_squamous_epithelium_male_adult_54_years	chr1	189149625	189149641	189149625	+	High_confidence	5	10	21	0.935018	3.746439	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	189149639	189151124	STRG.7220.1	+	189149639,189150541	189149876,189151124	0.619048
esophagus_squamous_epithelium_male_adult_54_years	chr14	95146614	95146674	95146673	-	RAMPAGE_only	60	66	187	8.326114	5.936063	chr14	95146085	95146813	LTR|ERV1|LTR27C	+	chr14	95086228	95141718	DICER1|ENST00000393063.5	-	95086228,95091033,95091202,95093887,95095824,95099779,95103345,95105070,95105677,95106040,95107607,95107879,95108323,95111316,95112171,95113091,95115666,95116452,95117621,95124195,95126579,95129471,95130057,95131508,95132514,95133314,95140658,95141682	95090663,95091109,95091365,95094156,95096713,95099935,95104126,95105246,95105783,95106223,95107761,95108093,95108503,95111456,95112247,95113224,95115821,95116695,95117754,95124668,95126748,95129632,95130192,95131639,95132677,95133503,95140759,95141718	0.909091
esophagus_squamous_epithelium_male_adult_54_years	chr15	43133126	43133146	43133126	+	High_confidence	9	10	24	1.068592	4.262692	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133143	43148788	TMEM62|ENST00000569535.5	+	43133143,43135511,43146492,43148754	43133402,43135649,43146634,43148788	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr17	75742693	75742754	75742748	+	High_confidence	5	8	38	1.691938	4.188331	chr17	75742779	75742995	SINE|MIR|MIRb	+	chr17	75742423	75749045	ITGB4|ENST00000584025.1	+	75742423,75743712,75746263,75748840	75742761,75743861,75746375,75749045	0.684211
esophagus_squamous_epithelium_male_adult_54_years	chr6	40088184	40088187	40088186	-	High_confidence	14	22	30	1.335740	4.556088	chr6	40088068	40088437	LTR|ERVL-MaLR|THE1B	-	chr6	40087402	40088172	STRG.38743.2	-	40087402	40088172	0.566667
esophagus_squamous_epithelium_male_adult_54_years	chr6	43013306	43013393	43013392	-	High_confidence	6	6	24	1.068592	4.418296	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr5	151633051	151633118	151633051	-	High_confidence	20	20	128	5.699158	5.935127	chr5	151633033	151633099	SINE|MIR|MIR1_Amn	+	chr5	151630933	151633101	STRG.36392.8	-	151630933	151633101	0.726562
esophagus_squamous_epithelium_male_adult_54_years	chr2	113265776	113265787	113265776	+	RAMPAGE_only	3	3	7	0.311673	2.807355	chr2	113265679	113265810	LINE|L2|L2a	+	chr2	113250765	113266973	PAX8-AS1|ENST00000510859.5	+	113250765,113255389,113259263,113263277,113265475	113250922,113255549,113259584,113263454,113266973	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr2	29114149	29114219	29114173	+	High_confidence	20	20	103	4.586041	5.356201	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.883495
esophagus_squamous_epithelium_male_adult_54_years	chr5	32403108	32403246	32403115	-	RAMPAGE_only	10	10	63	2.805054	4.887439	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.984127
esophagus_squamous_epithelium_male_adult_54_years	chr5	34918370	34918371	34918370	+	RAMPAGE_only	6	6	9	0.400722	2.947703	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chr7	87039797	87039807	87039806	-	High_confidence	3	3	7	0.311673	2.521641	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr8	39032698	39032749	39032698	+	RAMPAGE_only	17	17	94	4.185319	5.852338	chr8	39031444	39032803	LINE|L1|L1P2	-	chr8	38997025	39105144	ADAM9|ENST00000468065.5	+	38997025,39007885,39011657,39013964,39016117,39017218,39018852,39021642,39023155,39025802,39026676,39041945,39054480,39055576,39071297,39077227,39090046,39091258,39101862,39103606	38997160,39007983,39011716,39014043,39016194,39017414,39018918,39021714,39023325,39025884,39026810,39042117,39054573,39055772,39071403,39077411,39090188,39091346,39101930,39105144	0.638298
esophagus_squamous_epithelium_male_adult_54_years	chr22	41261447	41261448	41261447	-	RAMPAGE_only	5	7	8	0.356197	2.521641	chr22	41261251	41261408	SINE|MIR|MIRc	-	chr22	41245614	41282514	RANGAP1|ENST00000455915.6	-	41245614,41249329,41249728,41251006,41252871,41254307,41256020,41256190,41256710,41257947,41261445,41264663,41268096,41274599,41280932	41246672,41249451,41249817,41251109,41252991,41254494,41256105,41256290,41256824,41258106,41261580,41264843,41268156,41274727,41282514	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr15	29759969	29759988	29759969	-	RAMPAGE_only	5	5	9	0.400722	3.000000	chr15	29759330	29760109	LINE|L1|L1MA9	-	chr15	29758902	29822502	TJP1|ENST00000495972.6	-	29758902,29761138,29761600,29762334,29766265,29772063,29773232,29800645,29822001	29760308,29761286,29761769,29762438,29766542,29772166,29773357,29800702,29822502	0.777778
esophagus_squamous_epithelium_male_adult_54_years	chr16	2757779	2757815	2757810	+	High_confidence	5	5	16	0.712395	3.750000	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr14	102947726	102947729	102947726	-	High_confidence	4	4	8	0.356197	2.521641	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102939915	102947937	STRG.78465.8	-	102939915,102940045,102940226,102943890,102945661,102946467	102939947,102940130,102940324,102944487,102945724,102947937	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr1	226182425	226182426	226182425	-	RAMPAGE_only	8	8	11	0.489771	3.459432	chr1	226182334	226182625	SINE|Alu|AluSz	+	chr1	226144678	226186722	ACBD3|NM_022735.3	-	226144678,226152334,226154646,226159183,226161530,226164788,226165858,226186389	226146821,226152619,226154833,226159358,226161689,226164929,226166000,226186722	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr9	33068829	33068849	33068829	-	RAMPAGE_only	2	3	7	0.311673	2.521641	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr17	51006088	51006110	51006088	-	RAMPAGE_only	4	4	12	0.534296	3.277613	chr17	51005881	51006041	DNA|hAT-Charlie|Charlie17a	-	chr17	50996228	51001745	SPAG9|ENST00000513827.5	-	50996228,50998443,50999660,51001714	50996694,50998617,50999717,51001745	0.833333
esophagus_squamous_epithelium_male_adult_54_years	chr14	77736976	77736988	77736987	-	High_confidence	3	4	7	0.311673	2.807355	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr6	127330859	127330938	127330928	-	High_confidence	2	2	14	0.623345	3.392747	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.571429
esophagus_squamous_epithelium_male_adult_54_years	chr11	65430263	65431269	65430815	+	RAMPAGE_only	128	130	2954	131.525887	7.593123	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65425550	65445540	STRG.65573.5	+	65425550,65437252	65437175,65445540	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr19	3062920	3062967	3062922	-	High_confidence	14	21	72	3.205777	4.598057	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr3	152873220	152873221	152873220	-	High_confidence	7	10	11	0.489771	2.721928	chr3	152873053	152873400	LTR|ERVL-MaLR|THE1B	-	chr3	152869969	152873217	STRG.24131.1	-	152869969,152873136	152870503,152873217	0.818182
esophagus_squamous_epithelium_male_adult_54_years	chr13	30376944	30376965	30376964	-	High_confidence	8	8	20	0.890493	3.787144	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30364176	30376996	STRG.73296.1	-	30364176,30367600,30372284,30375466,30376826	30364205,30367717,30372374,30375776,30376996	0.600000
esophagus_squamous_epithelium_male_adult_54_years	chr7	39013338	39013356	39013338	+	High_confidence	3	3	10	0.445247	2.947703	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr15	69337346	69337350	69337346	+	RAMPAGE_only	2	2	6	0.267148	2.584963	chr15	69335705	69337814	LTR|ERV1|HUERS-P1-int	+	chr15	69359949	69407641	PAQR5|ENST00000340965.4	+	69359949,69379882,69384676,69389653,69397467,69399973,69403580	69360131,69380010,69384882,69389780,69397564,69400115,69407641	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr7	6953942	6953991	6953969	-	High_confidence	12	12	49	2.181709	5.084098	chr7	6950904	6958745	LTR|ERV1|HERVE-int	-	chr7	6950485	6953968	STRG.43845.1	-	6950485,6953825	6953249,6953968	0.938776
esophagus_squamous_epithelium_male_adult_54_years	chr11	33141885	33141939	33141938	-	RAMPAGE_only	2	2	10	0.445247	2.947703	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33084583	33161465	CSTF3|ENST00000323959.8	-	33084583,33085712,33085894,33086987,33090531,33092270,33096305,33096834,33098689,33099033,33099607,33102176,33103106,33105566,33105882,33105997,33107902,33108385,33141666,33141884,33161298	33085289,33085773,33085989,33087141,33090727,33092340,33096408,33096978,33098764,33099150,33099717,33102339,33103184,33105693,33105917,33106064,33108000,33108418,33141762,33141986,33161465	0.700000
esophagus_squamous_epithelium_male_adult_54_years	chr14	105033707	105033724	105033707	-	High_confidence	2	2	10	0.445247	3.321928	chr14	105033694	105034048	LTR|ERV1|MER4-int	+	chr14	105033276	105033739	STRG.78531.1	-	105033276	105033739	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr8	133255218	133255240	133255239	-	High_confidence	2	4	7	0.311673	2.584963	chr8	133255180	133255391	SINE|MIR|MIRb	+	chr8	133237175	133256228	NDRG1|ENST00000519278.5	-	133237175,133242022,133244354,133246615,133247874,133248714,133250439,133254538	133239119,133242074,133244390,133246663,133247926,133248771,133250543,133256228	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr22	50756908	50756950	50756949	+	High_confidence	5	5	25	1.113117	4.142915	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.560000
esophagus_squamous_epithelium_male_adult_54_years	chr19	2028766	2028780	2028771	-	RAMPAGE_only	5	5	17	0.756919	3.375000	chr19	2028707	2028826	LINE|CR1|L3b	-	chr19	1985492	2034881	STRG.90419.1	-	1985492,1986829,1987165,1987499,1990003,1990716,1993019,1997343,2017182,2028707,2034750	1986649,1986976,1987253,1987692,1990201,1990822,1993176,1997463,2017300,2028834,2034881	0.941176
esophagus_squamous_epithelium_male_adult_54_years	chr18	63891209	63891256	63891209	+	High_confidence	2	2	15	0.667870	3.324863	chr18	63891132	63891291	DNA|hAT-Tip100|MER45A	-	chr18	63890556	63897200	SERPINB2|ENST00000443281.1	+	63890556,63891435,63895263,63897090	63890900,63891612,63895383,63897200	0.733333
esophagus_squamous_epithelium_male_adult_54_years	chr1	60640061	60640083	60640082	-	High_confidence	7	7	20	0.890493	4.084184	chr1	60640012	60646037	LINE|L1|L1PA2	+	chr1	60540248	60640491	LINC01748|ENST00000439156.2	-	60540248,60542296,60573337,60588036,60595537,60600126,60640010,60640271	60540433,60542411,60573413,60588162,60596373,60600250,60640126,60640491	0.600000
esophagus_squamous_epithelium_male_adult_54_years	chr1	117108954	117108957	117108954	+	High_confidence	29	31	72	3.205777	5.367663	chr1	117108798	117109144	LTR|ERVL-MaLR|MLT1B	+	chr1	117108177	117109852	STRG.5028.1	+	117108177	117109852	0.902778
esophagus_squamous_epithelium_male_adult_54_years	chr10	75140575	75140597	75140586	+	RAMPAGE_only	7	7	18	0.801444	3.734522	chr10	75140501	75140676	LTR|ERVL-MaLR|MLT1E3	+	chr10	75111708	75182123	SAMD8|ENST00000372687.4	+	75111708,75150513,75164644,75168540,75176065	75111778,75151106,75164740,75168658,75182123	0.944444
esophagus_squamous_epithelium_male_adult_54_years	chr2	159428326	159428365	159428356	-	RAMPAGE_only	9	10	35	1.558364	4.923182	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.514286
esophagus_squamous_epithelium_male_adult_54_years	chr10	72355126	72355146	72355145	-	High_confidence	6	6	13	0.578821	3.418296	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.923077
esophagus_squamous_epithelium_male_adult_54_years	chr7	77990390	77990414	77990390	+	High_confidence	3	3	12	0.534296	3.095795	chr7	77987877	77991087	LINE|L1|L1PBa1	-	chr7	77990383	77994942	AC004990.1|ENST00000431722.1	+	77990383,77990983,77994871	77990677,77991182,77994942	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr6	137218759	137218822	137218821	-	High_confidence	13	13	27	1.202166	4.458591	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.740741
esophagus_squamous_epithelium_male_adult_54_years	chr2	191682566	191682576	191682575	+	RAMPAGE_only	2	3	7	0.311673	2.584963	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191686939	STRG.16650.11	+	191678989,191681945,191684229	191679128,191683804,191686939	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr6	3083203	3083252	3083251	+	RAMPAGE_only	4	4	14	0.623345	3.546594	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.928571
esophagus_squamous_epithelium_male_adult_54_years	chr7	93114877	93114884	93114877	-	RAMPAGE_only	4	4	14	0.623345	3.546594	chr7	93114834	93115061	LINE|L1|L1MEg2	+	chr7	93102248	93117962	SAMD9|ENST00000446617.1	-	93102248,93117862	93106105,93117962	0.928571
esophagus_squamous_epithelium_male_adult_54_years	chrX	151958581	151958582	151958581	-	RAMPAGE_only	77	79	81	3.606499	5.089784	chrX	151958580	151958655	DNA|DNA|MER135	-	chrX	151953124	151959723	GABRE|ENST00000486255.1	-	151953124,151955367,151955707	151955084,151955567,151959723	0.950617
esophagus_squamous_epithelium_male_adult_54_years	chr13	52617097	52617155	52617133	+	High_confidence	4	4	27	1.202166	4.680813	chr13	52616905	52617215	SINE|Alu|AluSg	+	chr13	52617469	52643784	HNRNPA1L2|NM_001011725.1	+	52617469,52621988,52627437,52632421,52637304,52642405	52617682,52622264,52627578,52632494,52637446,52643784	0.592593
esophagus_squamous_epithelium_male_adult_54_years	chr6	106098066	106098085	106098084	+	RAMPAGE_only	4	4	11	0.489771	3.121928	chr6	106098107	106098187	LINE|L2|L2	+	chr6	106086319	106109938	STRG.40909.4	+	106086319,106088200,106104824,106106370,106106910	106086595,106099552,106105933,106106499,106109938	0.909091
esophagus_squamous_epithelium_male_adult_54_years	chr3	11225985	11226026	11226025	+	High_confidence	5	6	19	0.845969	3.826875	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.736842
esophagus_squamous_epithelium_male_adult_54_years	chr9	121313963	121314021	121314002	+	RAMPAGE_only	16	16	61	2.716005	4.788664	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.967213
esophagus_squamous_epithelium_male_adult_54_years	chr6	132731728	132731729	132731728	-	RAMPAGE_only	10	10	12	0.534296	3.084963	chr6	132731663	132731956	SINE|Alu|AluSx	-	chr6	132726993	132734333	VNN3|ENST00000544102.1	-	132726993,132728740,132731374,132734252	132727012,132728979,132731527,132734333	0.583333
esophagus_squamous_epithelium_male_adult_54_years	chr17	60887003	60887026	60887025	+	High_confidence	2	2	8	0.356197	3.000000	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr14	95146707	95146711	95146710	-	RAMPAGE_only	6	10	15	0.667870	3.106891	chr14	95146085	95146813	LTR|ERV1|LTR27C	+	chr14	95086228	95141718	DICER1|ENST00000393063.5	-	95086228,95091033,95091202,95093887,95095824,95099779,95103345,95105070,95105677,95106040,95107607,95107879,95108323,95111316,95112171,95113091,95115666,95116452,95117621,95124195,95126579,95129471,95130057,95131508,95132514,95133314,95140658,95141682	95090663,95091109,95091365,95094156,95096713,95099935,95104126,95105246,95105783,95106223,95107761,95108093,95108503,95111456,95112247,95113224,95115821,95116695,95117754,95124668,95126748,95129632,95130192,95131639,95132677,95133503,95140759,95141718	0.800000
esophagus_squamous_epithelium_male_adult_54_years	chr12	48489741	48489778	48489774	+	High_confidence	5	5	30	1.335740	4.053236	chr12	48489725	48490021	SINE|Alu|AluSx	-	chr12	48489549	48496384	STRG.70054.2	+	48489549,48490811,48492946,48494797	48489864,48490836,48492995,48496384	0.900000
esophagus_squamous_epithelium_male_adult_54_years	chr11	67848640	67848696	67848682	-	High_confidence	13	13	89	3.962696	5.008280	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67845213	67848987	STRG.65690.1	-	67845213,67848565	67847989,67848987	0.955056
esophagus_squamous_epithelium_male_adult_54_years	chr12	65665886	65665906	65665905	-	RAMPAGE_only	8	9	14	0.623345	3.392747	chr12	65665693	65666050	DNA|TcMar-Tigger|Tigger3a	+	chr12	65645991	65646462	PCNPP3|ENST00000393579.2	-	65645991	65646462	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr11	121465826	121465846	121465845	+	RAMPAGE_only	2	3	7	0.311673	2.584963	chr11	121465836	121465864	DNA|hAT-Charlie|MER5B	-	chr11	121452379	121547024	SORL1|ENST00000532451.1	+	121452379,121470006,121478117,121488031,121490042,121496868,121513002,121514151,121520656,121522585,121522915,121532463,121543547,121545242,121546862	121452616,121470123,121478243,121488193,121490110,121497049,121513104,121514321,121520849,121522703,121522989,121532552,121543726,121545429,121547024	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr19	9700746	9700778	9700777	-	High_confidence	131	133	222	9.884478	3.907441	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9689923	9700776	ZNF812P|ENST00000536819.5	-	9689923,9696093,9700387	9691269,9696248,9700776	0.950450
esophagus_squamous_epithelium_male_adult_54_years	chr10	6779630	6779631	6779630	+	High_confidence	5	6	8	0.356197	2.750000	chr10	6779419	6779969	LTR|ERVL|MLT2A2	+	chr10	6779614	6838810	STRG.59194.1	+	6779614,6781303,6833642,6837973	6779887,6781486,6833688,6838810	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr1	171129751	171129779	171129778	-	High_confidence	5	5	9	0.400722	3.000000	chr1	171129628	171130038	LTR|ERVL-MaLR|MSTB	-	chr1	171119893	171129930	STRG.6713.1	-	171119893,171121749,171129713	171120556,171121863,171129930	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chrX	15602157	15602189	15602157	-	High_confidence	34	34	64	2.849579	3.902533	chrX	15602053	15602111	LINE|CR1|L3	-	chrX	15594886	15602148	ACE2|ENST00000484756.1	-	15594886,15600725,15601955	15595003,15601014,15602148	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr8	116648828	116648905	116648864	-	RAMPAGE_only	4	4	25	1.113117	3.973661	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.920000
esophagus_squamous_epithelium_male_adult_54_years	chr2	171433377	171433386	171433377	-	High_confidence	27	27	43	1.914561	4.945772	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.720930
esophagus_squamous_epithelium_male_adult_54_years	chr6	77369106	77369167	77369166	-	High_confidence	16	30	99	4.407943	5.594977	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77273025	77369158	STRG.40130.1	-	77273025,77350621,77368885	77273307,77350734,77369158	0.878788
esophagus_squamous_epithelium_male_adult_54_years	chr1	152049863	152049886	152049863	-	RAMPAGE_only	7	7	18	0.801444	3.905765	chr1	152049394	152049912	DNA|PiggyBac|Looper	-	chr1	152032505	152047907	S100A11|ENST00000478109.1	-	152032505,152033647,152047821	152032823,152033800,152047907	0.777778
esophagus_squamous_epithelium_male_adult_54_years	chr12	92421758	92421800	92421799	-	RAMPAGE_only	8	8	32	1.424790	4.415061	chr12	92421421	92421865	LTR|ERVL|MLT2B1	+	chr12	92420093	92428146	CLLU1OS|ENST00000378487.3	-	92420093,92420998,92422546,92428094	92420460,92421173,92422636,92428146	0.812500
esophagus_squamous_epithelium_male_adult_54_years	chr8	12522810	12522814	12522813	+	RAMPAGE_only	6	6	13	0.578821	3.084963	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12564148	12567710	STRG.50021.1	+	12564148	12567710	0.923077
esophagus_squamous_epithelium_male_adult_54_years	chr17	65855326	65855327	65855326	-	RAMPAGE_only	7	8	9	0.400722	2.750000	chr17	65854979	65855781	LINE|L1|L1MEh	+	chr17	65635815	65873661	CEP112|ENST00000580694.5	-	65635815,65637123,65640963,65689128,65743067,65750661,65851803,65872956,65873636	65635974,65637188,65641065,65689218,65743217,65750724,65852034,65873121,65873661	0.555556
esophagus_squamous_epithelium_male_adult_54_years	chr18	31455689	31455695	31455692	+	RAMPAGE_only	2	2	7	0.311673	2.584963	chr18	31455563	31455697	LINE|L2|L2c	-	chr18	31447794	31497395	STRG.88987.2	+	31447794,31456992,31458444,31459032,31459844,31460832,31461226,31464110,31465317,31466529,31469088,31472283,31472724,31474120,31475645	31456475,31457124,31458600,31459177,31460011,31460961,31461412,31464382,31465457,31466754,31469349,31472423,31472788,31474404,31497395	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr3	193614814	193614861	193614823	+	High_confidence	8	11	32	1.424790	3.601410	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr17	59620042	59620080	59620042	+	High_confidence	3	6	16	0.712395	3.125000	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr19	43395891	43395965	43395928	+	High_confidence	3	5	30	1.335740	3.823498	chr19	43395659	43396151	LTR|ERVL|MLT2F	+	chr19	43395791	43396820	STRG.92518.1	+	43395791	43396820	0.800000
esophagus_squamous_epithelium_male_adult_54_years	chr7	5514073	5514103	5514102	-	High_confidence	3	3	11	0.489771	3.459432	chr7	5513926	5514323	LINE|L2|L2a	+	chr7	5475796	5513798	FBXL18|NM_024963.5	-	5475796,5491230,5500487,5505411,5513656	5481931,5491449,5502031,5505630,5513798	0.636364
esophagus_squamous_epithelium_male_adult_54_years	chr1	223176901	223176904	223176903	+	RAMPAGE_only	117	154	171	7.613719	6.324781	chr1	223176731	223177097	LTR|ERVL-MaLR|MLT1A0	+	chr1	223186167	223196486	STRG.8353.1	+	223186167,223189932	223186948,223196486	0.584795
esophagus_squamous_epithelium_male_adult_54_years	chr8	124857490	124857491	124857490	-	High_confidence	9	9	10	0.445247	2.947703	chr8	124857216	124857672	LTR|ERVL|LTR16A2	-	chr8	124834883	124857516	AC100858.3|ENST00000533496.1	-	124834883,124840123,124857362	124835143,124840262,124857516	0.600000
esophagus_squamous_epithelium_male_adult_54_years	chr5	93755899	93755915	93755899	-	RAMPAGE_only	4	4	10	0.445247	2.947703	chr5	93755381	93761065	LINE|L1|L1PB1	+	chr5	93618068	94111635	FAM172A|ENST00000395965.7	-	93618068,93776158,93784382,93824147,93881469,93958776,93964457,94050730,94053125,94074645,94111510	93621129,93776243,93784499,93824267,93881688,93958968,93964523,94050831,94053227,94074769,94111635	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr18	57719694	57719716	57719711	-	RAMPAGE_only	2	2	9	0.400722	2.750000	chr18	57719248	57725264	LINE|L1|L1PA2	+	chr18	57697669	57708558	ATP8B1|ENST00000589147.5	-	57697669,57697794,57701038,57701214,57704554,57706489,57708483	57697688,57697867,57701100,57701313,57704668,57706587,57708558	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr4	128428005	128428064	128428005	+	High_confidence	15	15	52	2.315283	5.103910	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.769231
esophagus_squamous_epithelium_male_adult_54_years	chr17	11974091	11974095	11974091	+	RAMPAGE_only	2	2	7	0.311673	2.584963	chr17	11972189	11975291	LTR|ERV1|HERVH-int	+	chr17	11971928	11977000	STRG.85314.3	+	11971928,11973569	11972335,11977000	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr6	167271170	167271176	167271175	+	High_confidence	3	3	8	0.356197	2.750000	chr6	167271035	167271181	DNA|hAT-Charlie|MER5A	+	chr6	167271168	167296196	UNC93A|ENST00000503433.5	+	167271168,167291438,167294516,167296031	167271458,167291576,167294698,167296196	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr12	13376643	13376709	13376665	-	High_confidence	31	34	106	4.719615	6.291461	chr12	13376413	13376888	LTR|ERVL|MLT2B1	-	chr12	13371088	13376675	STRG.68972.3	-	13371088,13376223,13376513	13375064,13376425,13376675	0.952830
esophagus_squamous_epithelium_male_adult_54_years	chr4	68188967	68189010	68188967	-	RAMPAGE_only	2	2	10	0.445247	3.121928	chr4	68188808	68189104	SINE|Alu|AluSq	+	chr4	68184177	68202837	STRG.27989.6	-	68184177,68185973,68188423	68184254,68187722,68202837	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr3	53371324	53371325	53371324	-	High_confidence	8	9	12	0.534296	3.251629	chr3	53365276	53371325	LINE|L1|L1PA2	-	chr3	53370715	53371317	STRG.21071.1	-	53370715	53371317	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr17	36499078	36499098	36499078	-	High_confidence	2	2	8	0.356197	2.807355	chr17	36498869	36499061	SINE|MIR|MIRb	-	chr17	36496184	36498883	MYO19|ENST00000612392.1	-	36496184,36498265	36496406,36498883	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr5	32531792	32531865	32531864	+	High_confidence	8	8	42	1.870036	4.368042	chr5	32531850	32532021	SINE|MIR|MIR3	-	chr5	32531848	32601055	SUB1|ENST00000513013.5	+	32531848,32536637,32571090,32591562,32598960,32601004	32531916,32536695,32571174,32591685,32599069,32601055	0.619048
esophagus_squamous_epithelium_male_adult_54_years	chr18	63586775	63586809	63586775	+	High_confidence	15	15	75	3.339351	5.510495	chr18	63586765	63586862	LINE|L2|L2a	+	chr18	63587299	63599198	SERPINB13|ENST00000269489.9	+	63587299,63588650,63589655,63592347,63592853,63594354,63595028,63596958	63587450,63588832,63589742,63592476,63592971,63594497,63595184,63599198	0.613333
esophagus_squamous_epithelium_male_adult_54_years	chr6	157578743	157578744	157578743	+	RAMPAGE_only	39	39	41	1.825512	4.560667	chr6	157578549	157578926	LTR|ERVL-MaLR|THE1D	+	chr6	157592772	157673938	ZDHHC14|ENST00000341375.12	+	157592772,157592987,157628348,157632833,157645736,157647258,157653524,157672723	157592829,157593146,157628486,157632882,157645839,157647368,157653627,157673938	0.634146
esophagus_squamous_epithelium_male_adult_54_years	chr13	109265415	109265417	109265415	+	High_confidence	1045	1666	2207	98.265955	6.526488	chr13	109265089	109265520	LTR|ERV1|LTR7Y	+	chr13	109265418	109277148	STRG.74988.1	+	109265418,109267610	109265667,109277148	0.567739
esophagus_squamous_epithelium_male_adult_54_years	chr12	15956713	15956720	15956719	+	High_confidence	16	18	27	1.202166	4.483856	chr12	15956683	15956730	DNA|TcMar-Mariner|MADE1	-	chr12	15956587	16037280	DERA|ENST00000526530.1	+	15956587,15956935,15958187,15959828,15962812,15982307,16032541,16036231,16036689	15956746,15957033,15958335,15959924,15962947,15982436,16032654,16036381,16037280	0.814815
esophagus_squamous_epithelium_male_adult_54_years	chr11	57794012	57794057	57794033	+	RAMPAGE_only	3	3	20	0.890493	4.121928	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.950000
esophagus_squamous_epithelium_male_adult_54_years	chr17	29212603	29212604	29212603	-	RAMPAGE_only	18	20	21	0.935018	3.984184	chr17	29212327	29212562	SINE|MIR|MIR	-	chr17	29071123	29180412	MYO18A|ENST00000527372.6	-	29071123,29082315,29085603,29086437,29086935,29089960,29090531,29090809,29092342,29092854,29093322,29093979,29094649,29094935,29096760,29097222,29097787,29098104,29098355,29098825,29099633,29103598,29107079,29109857,29110435,29111423,29111721,29114010,29114906,29115350,29115663,29116443,29118044,29118376,29119334,29120615,29120997,29121546,29121850,29122165,29165941,29180312	29074914,29082438,29085648,29086577,29087121,29090098,29090615,29090926,29092456,29093001,29093427,29094090,29094850,29095059,29096915,29097350,29097899,29098224,29098445,29098969,29099762,29103664,29107189,29110101,29110622,29111583,29111863,29114097,29115099,29115441,29115840,29116455,29118189,29118440,29119435,29120758,29121211,29121723,29121957,29122253,29167021,29180412	0.523810
esophagus_squamous_epithelium_male_adult_54_years	chr15	64006766	64006793	64006785	-	RAMPAGE_only	2	2	8	0.356197	2.807355	chr15	64006618	64006782	SINE|MIR|MIR1_Amn	-	chr15	63939292	64030020	DAPK2|ENST00000559897.1	-	63939292,63971422,63983624,64029788	63939361,63971561,63983754,64030020	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr6	79631425	79631426	79631425	+	High_confidence	5	6	8	0.356197	2.521641	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr1	44032193	44032197	44032196	-	High_confidence	5	6	9	0.400722	2.750000	chr1	44032158	44032201	SINE|MIR|MIRc	+	chr1	43996482	44031492	SLC6A9|NM_001024845.2	-	43996482,43997854,44000766,44000955,44001163,44001389,44002312,44002511,44002852,44008352,44009964,44010725,44024247,44031305	43997739,43998025,44000867,44001055,44001298,44001627,44002416,44002646,44002985,44008623,44010096,44010882,44024362,44031492	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chr12	109878973	109878999	109878998	+	RAMPAGE_only	21	36	52	2.315283	5.277363	chr12	109878962	109879076	SINE|MIR|MIRb	-	chr12	109900263	109905027	TCHP|ENST00000537218.1	+	109900263,109903026,109903936,109904736	109900426,109903214,109904147,109905027	0.557692
esophagus_squamous_epithelium_male_adult_54_years	chr8	102275539	102275563	102275542	-	RAMPAGE_only	4	4	16	0.712395	3.240224	chr8	102275368	102275493	LINE|L1|L1ME3E	-	chr8	102271193	102276820	UBR5|ENST00000521566.1	-	102271193,102272528,102275520,102275707,102276773	102271245,102272772,102275619,102275828,102276820	0.812500
esophagus_squamous_epithelium_male_adult_54_years	chr12	102108244	102108263	102108244	+	High_confidence	17	26	70	3.116727	5.294916	chr12	102108033	102108604	LTR|ERVL|MLT2B3	+	chr12	102108243	102109529	STRG.71958.1	+	102108243	102109529	0.642857
esophagus_squamous_epithelium_male_adult_54_years	chr7	28986334	28986378	28986334	+	High_confidence	14	14	66	2.938628	4.904996	chr7	28986268	28986495	LTR|Gypsy|MamGypLTR1d	-	chr7	28986359	28996204	STRG.44714.2	+	28986359,28996164	28987109,28996204	0.969697
esophagus_squamous_epithelium_male_adult_54_years	chr16	9108737	9108787	9108756	+	RAMPAGE_only	8	15	38	1.691938	3.595730	chr16	9108771	9108857	SINE|MIR|MIRb	+	chr16	9104847	9113181	AC087190.3|ENST00000574616.2	+	9104847	9113181	0.947368
esophagus_squamous_epithelium_male_adult_54_years	chr3	114624984	114625007	114624984	-	High_confidence	5	5	10	0.445247	2.646439	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.600000
esophagus_squamous_epithelium_male_adult_54_years	chr1	166850112	166850124	166850112	+	RAMPAGE_only	4	4	9	0.400722	2.750000	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chr3	188947225	188947237	188947236	+	High_confidence	6	6	13	0.578821	3.418296	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.692308
esophagus_squamous_epithelium_male_adult_54_years	chr2	81481734	81481754	81481735	+	High_confidence	13	23	52	2.315283	5.288179	chr2	81481147	81482372	LTR|ERV1|LTR2752	-	chr2	81481752	81482918	STRG.12524.1	+	81481752	81482918	0.519231
esophagus_squamous_epithelium_male_adult_54_years	chr12	48489315	48489338	48489315	+	High_confidence	20	22	64	2.849579	5.508871	chr12	48489156	48489319	DNA|hAT-Tip100|MamTip3	+	chr12	48489549	48496384	STRG.70054.2	+	48489549,48490811,48492946,48494797	48489864,48490836,48492995,48496384	0.953125
esophagus_squamous_epithelium_male_adult_54_years	chr19	15828958	15828959	15828958	+	High_confidence	11	13	14	0.623345	3.392747	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15828957	15835415	UCA1|ENST00000642256.1	+	15828957,15831207,15834501	15829338,15831356,15835415	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr9	87042075	87042111	87042075	-	High_confidence	2	2	12	0.534296	3.095795	chr9	87041882	87047900	LINE|L1|L1PA3	+	chr9	87008450	87042126	LOC440173|NR_027471.1	-	87008450,87041870	87010210,87042126	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr6	37320182	37320183	37320182	+	RAMPAGE_only	24	24	25	1.113117	3.229574	chr6	37320221	37320448	SINE|MIR|MIR	+	chr6	37257771	37332970	TBC1D22B|ENST00000373491.3	+	37257771,37269593,37279303,37282184,37282881,37284335,37287006,37291242,37312917,37313815,37316702,37317110,37331043	37257973,37269650,37279611,37282364,37282952,37284464,37287072,37291357,37313024,37313891,37316830,37317206,37332970	0.920000
esophagus_squamous_epithelium_male_adult_54_years	chr5	134613031	134613032	134613031	-	High_confidence	7	7	9	0.400722	2.947703	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr20	62367073	62367116	62367073	-	High_confidence	7	7	56	2.493382	5.016915	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.982143
esophagus_squamous_epithelium_male_adult_54_years	chr10	30999513	30999520	30999513	-	High_confidence	2	2	6	0.267148	2.584963	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr19	7642301	7642316	7642301	+	High_confidence	2	2	8	0.356197	2.807355	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr2	173532873	173533113	173532900	+	High_confidence	18	18	268	11.932613	7.251187	chr2	173527289	173533317	LINE|L1|L1PA3	-	chr2	173532819	173698971	STRG.15554.1	+	173532819,173697719	173533339,173698971	0.735075
esophagus_squamous_epithelium_male_adult_54_years	chr12	8285827	8285851	8285827	-	High_confidence	18	18	65	2.894104	5.158214	chr12	8282795	8290617	LTR|ERV1|HERVE-int	-	chr12	8284757	8285846	STRG.68483.1	-	8284757,8285714	8285138,8285846	0.969231
esophagus_squamous_epithelium_male_adult_54_years	chr8	17692225	17692264	17692225	-	High_confidence	7	7	46	2.048135	5.349649	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.695652
esophagus_squamous_epithelium_male_adult_54_years	chr12	121993512	121993591	121993552	+	High_confidence	5	7	39	1.736462	4.550953	chr12	121993005	121993967	Retroposon|SVA|SVA_F	+	chr12	121992590	122003927	STRG.72790.1	+	121992590,121999715,122001496,122003651	121993672,121999944,122001598,122003927	0.897436
esophagus_squamous_epithelium_male_adult_54_years	chr3	197299271	197299317	197299316	-	High_confidence	15	16	77	3.428400	5.517031	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.922078
esophagus_squamous_epithelium_male_adult_54_years	chr2	207754843	207754847	207754844	+	RAMPAGE_only	3	6	10	0.445247	2.725481	chr2	207754884	207755071	SINE|Alu|AluJo	+	chr2	207711750	207755244	CCNYL1|ENST00000339882.9	+	207711750,207724799,207726841,207737410,207742222,207747046,207750956,207753587	207712116,207724874,207726876,207737446,207742342,207747213,207751119,207755244	0.800000
esophagus_squamous_epithelium_male_adult_54_years	chr10	34973970	34974007	34973977	+	High_confidence	24	26	166	7.391096	6.414508	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34973983	34975576	STRG.60114.3	+	34973983,34974172	34974088,34975576	0.981928
esophagus_squamous_epithelium_male_adult_54_years	chrX	113991907	113991927	113991926	-	RAMPAGE_only	12	12	25	1.113117	3.943465	chrX	113991687	113992070	LTR|ERVL|MLT2A1	-	chrX	113961710	114059289	XACT|ENST00000649506.1	-	113961710,114042367,114059003	113963599,114042484,114059289	0.680000
esophagus_squamous_epithelium_male_adult_54_years	chr5	177883461	177883477	177883472	+	RAMPAGE_only	9	9	25	1.113117	4.136842	chr5	177883451	177883608	SINE|MIR|MIR	+	chr5	177875521	177884272	AC106795.1|ENST00000506672.5	+	177875521,177876531,177878643,177882368,177882651,177883666	177875860,177876688,177878848,177882530,177882752,177884272	0.880000
esophagus_squamous_epithelium_male_adult_54_years	chr11	120128653	120128666	120128653	-	High_confidence	5	6	9	0.400722	3.169925	chr11	120128621	120128702	LINE|L2|L2a	-	chr11	120112409	120128913	TRIM29|ENST00000529044.5	-	120112409,120115337,120118222,120120572,120122953,120125690,120127335,120128399,120128647	120112476,120115414,120118321,120120665,120123055,120125889,120127569,120128495,120128913	0.555556
esophagus_squamous_epithelium_male_adult_54_years	chr15	90467505	90467545	90467526	+	RAMPAGE_only	3	3	15	0.667870	3.664498	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.533333
esophagus_squamous_epithelium_male_adult_54_years	chr4	142474348	142474408	142474407	-	High_confidence	191	203	344	15.316488	6.742227	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.779070
esophagus_squamous_epithelium_male_adult_54_years	chr2	36931148	36931149	36931148	-	RAMPAGE_only	7	9	9	0.400722	2.947703	chr2	36931091	36931134	SINE|Alu|AluYk11	-	chr2	36849405	36966471	STRN|ENST00000379213.3	-	36849405,36849713,36850999,36855211,36857855,36861131,36867813,36869553,36877890,36883931,36893897,36899522,36902583,36905539,36916077,36925104,36966229,36966381	36849625,36849800,36851107,36855352,36858023,36861253,36867861,36869729,36878027,36884075,36894033,36899658,36902751,36905618,36916151,36925208,36966345,36966471	0.777778
esophagus_squamous_epithelium_male_adult_54_years	chr6	30136135	30136140	30136135	+	High_confidence	2	3	8	0.356197	2.521641	chr6	30136119	30136206	LINE|CR1|L3b	+	chr6	30136123	30137198	TRIM40|ENST00000489892.1	+	30136123,30136732	30136598,30137198	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr17	2667167	2667196	2667195	+	High_confidence	16	16	29	1.291216	4.720050	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.965517
esophagus_squamous_epithelium_male_adult_54_years	chr12	15956689	15956690	15956689	+	High_confidence	6	6	6	0.267148	2.584963	chr12	15956683	15956730	DNA|TcMar-Mariner|MADE1	-	chr12	15956587	16037280	DERA|ENST00000526530.1	+	15956587,15956935,15958187,15959828,15962812,15982307,16032541,16036231,16036689	15956746,15957033,15958335,15959924,15962947,15982436,16032654,16036381,16037280	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr1	68386332	68386333	68386332	+	High_confidence	877	1103	1143	50.891702	5.682014	chr1	68386003	68386437	LTR|ERV1|LTR7	+	chr1	68386339	68387922	STRG.3475.1	+	68386339	68387922	0.961505
esophagus_squamous_epithelium_male_adult_54_years	chr19	1148418	1148454	1148423	-	RAMPAGE_only	8	8	37	1.647413	4.510148	chr19	1148343	1148479	LINE|L2|L2b	+	chr19	1107633	1132274	SBNO2|NM_001100122.1	-	1107633,1108778,1109134,1109291,1109505,1109682,1110744,1111018,1111505,1111995,1112188,1112401,1112817,1113534,1114230,1116020,1116828,1117322,1119010,1119515,1119905,1122138,1122467,1122657,1122893,1123533,1123941,1127603,1132089	1108704,1108969,1109211,1109423,1109598,1109777,1110888,1111093,1111614,1112067,1112301,1112537,1112949,1113704,1114422,1116103,1116926,1117499,1119164,1119621,1120023,1122282,1122558,1122791,1123045,1123639,1124022,1127765,1132274	0.891892
esophagus_squamous_epithelium_male_adult_54_years	chr4	118265840	118265864	118265840	-	High_confidence	13	17	41	1.825512	5.016089	chr4	118265367	118266730	LTR|ERV1|LTR12C	+	chr4	118056760	118265871	STRG.29668.1	-	118056760,118125991,118204159,118251568,118258975,118265783	118056798,118126102,118204282,118251687,118259075,118265871	0.731707
esophagus_squamous_epithelium_male_adult_54_years	chr11	65429505	65429576	65429548	+	RAMPAGE_only	16	20	62	2.760530	3.895213	chr11	65429519	65429591	LINE|L1|L1ME4a	-	chr11	65425550	65445540	STRG.65573.5	+	65425550,65437252	65437175,65445540	0.951613
esophagus_squamous_epithelium_male_adult_54_years	chr15	34988764	34988792	34988764	-	High_confidence	10	10	52	2.315283	4.897085	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.903846
esophagus_squamous_epithelium_male_adult_54_years	chr3	134485442	134485448	134485442	-	High_confidence	2	3	7	0.311673	2.584963	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr11	77175242	77175243	77175242	+	High_confidence	4	4	7	0.311673	2.521641	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr3	14181568	14181571	14181568	+	RAMPAGE_only	2	2	7	0.311673	2.584963	chr3	14181325	14181571	SINE|MIR|MIR	-	chr3	14178727	14198369	LSM3|NM_014463.2	+	14178727,14181559,14183936,14198035	14178881,14181670,14184032,14198369	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr1	150729704	150729749	150729709	-	High_confidence	12	12	54	2.404332	5.203509	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150646224	150729971	STRG.5591.1	-	150646224,150661813,150663631,150694655,150696991,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150714614,150717137,150719472,150729141,150729573	150648748,150661928,150663763,150694850,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150714678,150717282,150719538,150729225,150729971	0.833333
esophagus_squamous_epithelium_male_adult_54_years	chr11	129814689	129814690	129814689	-	High_confidence	68	68	84	3.740073	5.543696	chr11	129814072	129815141	LTR|ERV1|LTR12D	-	chr11	129814033	129814672	STRG.67949.1	-	129814033	129814672	0.880952
esophagus_squamous_epithelium_male_adult_54_years	chr15	30624362	30624365	30624362	+	High_confidence	13	13	20	0.890493	3.384184	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.800000
esophagus_squamous_epithelium_male_adult_54_years	chr21	13934536	13934552	13934536	-	RAMPAGE_only	4	4	15	0.667870	3.521641	chr21	13934252	13936999	Retroposon|SVA|SVA_A	-	chr21	13901340	13979993	STRG.95906.8	-	13901340,13907889,13909573,13910495,13911717,13915186,13916746,13917554,13925163,13932227,13933311,13939245,13940814,13943743,13945038,13951066,13951231,13954065,13958115,13962739,13967380,13969972,13979701	13907736,13908028,13909693,13910549,13911763,13915409,13916958,13917836,13925293,13932374,13938067,13939428,13940978,13943862,13945109,13951139,13951260,13954150,13958185,13962871,13967436,13972057,13979993	0.933333
esophagus_squamous_epithelium_male_adult_54_years	chrX	115647922	115648015	115647987	+	RAMPAGE_only	5	10	38	1.691938	4.701746	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.973684
esophagus_squamous_epithelium_male_adult_54_years	chr11	65438928	65439074	65438928	+	RAMPAGE_only	45	48	157	6.990374	5.331036	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65425550	65445540	STRG.65573.5	+	65425550,65437252	65437175,65445540	0.993631
esophagus_squamous_epithelium_male_adult_54_years	chr5	93756013	93756049	93756030	-	RAMPAGE_only	6	8	22	0.979543	3.884184	chr5	93755381	93761065	LINE|L1|L1PB1	+	chr5	93618068	94111635	FAM172A|ENST00000395965.7	-	93618068,93776158,93784382,93824147,93881469,93958776,93964457,94050730,94053125,94074645,94111510	93621129,93776243,93784499,93824267,93881688,93958968,93964523,94050831,94053227,94074769,94111635	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr12	56157327	56157354	56157353	+	High_confidence	7	8	34	1.513839	4.225620	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.823529
esophagus_squamous_epithelium_male_adult_54_years	chr10	103890267	103890286	103890267	-	RAMPAGE_only	6	6	14	0.623345	3.807355	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103892375	STRG.62465.4	-	103882554,103889071,103892296	103882841,103889144,103892375	0.928571
esophagus_squamous_epithelium_male_adult_54_years	chr11	65438436	65438782	65438659	+	RAMPAGE_only	34	37	710	31.612519	6.041979	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65425550	65445540	STRG.65573.5	+	65425550,65437252	65437175,65445540	0.998592
esophagus_squamous_epithelium_male_adult_54_years	chr16	68834158	68834206	68834158	+	RAMPAGE_only	3	3	12	0.534296	3.084963	chr16	68833960	68834253	SINE|Alu|AluJb	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.916667
esophagus_squamous_epithelium_male_adult_54_years	chr11	125090446	125090447	125090446	+	RAMPAGE_only	84	85	85	3.784597	5.210363	chr11	125089312	125090854	LTR|ERV1|LTR12C	+	chr11	125083138	125126642	STRG.67712.5	+	125083138,125083814,125084233,125084824,125085065,125085394,125085576,125085953,125086203,125088118,125125228	125083424,125083877,125084319,125084873,125085139,125085473,125085674,125086018,125086260,125090871,125126642	0.905882
esophagus_squamous_epithelium_male_adult_54_years	chr2	241372946	241372972	241372946	+	RAMPAGE_only	2	2	7	0.311673	2.807355	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241356296	241466030	FARP2|ENST00000373287.8	+	241356296,241373083,241403827,241404798,241407536,241411032,241413306,241417961,241431678,241434157,241434961,241436480,241441303,241456746,241462522,241463334,241463898,241465459	241356388,241373290,241403932,241404841,241407615,241411130,241413421,241418109,241431774,241434321,241435030,241436538,241441556,241456922,241462612,241463468,241463980,241466030	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr12	109885820	109885845	109885820	+	RAMPAGE_only	11	11	19	0.845969	3.461320	chr12	109885780	109885918	SINE|Alu|AluJr	-	chr12	109900263	109905027	TCHP|ENST00000537218.1	+	109900263,109903026,109903936,109904736	109900426,109903214,109904147,109905027	0.526316
esophagus_squamous_epithelium_male_adult_54_years	chr5	160229136	160229147	160229136	+	High_confidence	51	55	161	7.168473	4.895896	chr5	160228757	160229177	LINE|L2|L2c	+	chr5	160229429	160238716	FABP6|ENST00000402432.3	+	160229429,160232097,160234819,160238605	160229624,160232273,160234909,160238716	0.975155
esophagus_squamous_epithelium_male_adult_54_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	6	6	9	0.400722	3.000000	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.555556
esophagus_squamous_epithelium_male_adult_54_years	chr7	107580245	107580267	107580264	+	High_confidence	669	669	3055	136.022879	6.903431	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.938789
esophagus_squamous_epithelium_male_adult_54_years	chr17	7013027	7013069	7013068	+	High_confidence	2	2	9	0.400722	3.000000	chr17	7012918	7013141	SINE|Alu|AluSx	+	chr17	7013230	7014520	RNASEK|ENST00000552321.2	+	7013230,7013665,7014144	7013516,7013742,7014520	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chr9	128885675	128885706	128885675	+	RAMPAGE_only	2	2	6	0.267148	2.584963	chr9	128885626	128885875	SINE|Alu|AluSx3	+	chr9	128882501	128918039	LRRC8A|NM_001127244.1	+	128882501,128886014,128907156,128916095	128882909,128886121,128909321,128918039	0.833333
esophagus_squamous_epithelium_male_adult_54_years	chr2	227534916	227534949	227534932	+	RAMPAGE_only	6	7	24	1.068592	4.061482	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.916667
esophagus_squamous_epithelium_male_adult_54_years	chr5	154038408	154038413	154038408	-	High_confidence	28	29	43	1.914561	4.880180	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.534884
esophagus_squamous_epithelium_male_adult_54_years	chr7	6590246	6590272	6590246	+	High_confidence	5	5	17	0.756919	3.852169	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.941176
esophagus_squamous_epithelium_male_adult_54_years	chr13	45369968	45370001	45369971	+	RAMPAGE_only	2	2	16	0.712395	3.456565	chr13	45369932	45370316	LINE|L2|L2a	+	chr13	45344378	45381217	TPT1-AS1|ENST00000523445.5	+	45344378,45344753,45351896,45377060,45378529,45379194,45381141	45344446,45344909,45352014,45377215,45378671,45379335,45381217	0.562500
esophagus_squamous_epithelium_male_adult_54_years	chr1	39026130	39026140	39026130	+	High_confidence	2	2	8	0.356197	2.521641	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr7	134432430	134432436	134432430	-	High_confidence	2	2	8	0.356197	2.807355	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr2	31254108	31254109	31254108	+	RAMPAGE_only	61	61	82	3.651023	5.836703	chr2	31254076	31254207	SINE|MIR|MIRc	-	chr2	31252409	31269447	STRG.10752.3	+	31252409,31260509,31261548,31266176	31254991,31260922,31261713,31269447	0.963415
esophagus_squamous_epithelium_male_adult_54_years	chr5	90929239	90929271	90929270	+	RAMPAGE_only	6	7	14	0.623345	3.546594	chr5	90923630	90929658	LINE|L1|L1PA2	-	chr5	90899182	91164216	ADGRV1|ENST00000640815.1	+	90899182,90965414,90985343,91072446,91102218,91150029,91153220,91163781	90899323,90965531,90985522,91072604,91102340,91150221,91153398,91164216	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr1	25818615	25818636	25818619	+	High_confidence	5	5	14	0.623345	3.700440	chr1	25818458	25818747	LTR|ERVL|LTR16A1	-	chr1	25818639	25829514	MTFR1L|ENST00000424294.5	+	25818639,25823018,25823643,25826301,25826614,25829508	25818852,25823128,25823748,25826411,25826826,25829514	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr21	43775873	43775972	43775927	-	High_confidence	4	5	37	1.647413	4.397579	chr21	43775665	43776004	LTR|ERV1|MER31A	+	chr21	43772510	43776238	CSTB|ENST00000639959.1	-	43772510,43776203	43774330,43776238	0.540541
esophagus_squamous_epithelium_male_adult_54_years	chr4	153687810	153687811	153687810	+	RAMPAGE_only	8	8	8	0.356197	3.000000	chr4	153687474	153687915	LTR|ERV1|MER57D	+	chr4	153684289	153688669	TLR2|ENST00000645889.1	+	153684289,153687901,153688092	153684360,153687988,153688669	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr21	29077453	29077489	29077486	+	High_confidence	17	17	57	2.537906	5.086560	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.561404
esophagus_squamous_epithelium_male_adult_54_years	chr19	39198216	39198249	39198248	+	RAMPAGE_only	5	5	14	0.623345	3.392747	chr19	39198261	39198457	SINE|MIR|MIRb	+	chr19	39196963	39201882	NCCRP1|NM_001001414.1	+	39196963,39198052,39198201,39199169,39200345,39200615	39197319,39198115,39198253,39199265,39200484,39201882	0.928571
esophagus_squamous_epithelium_male_adult_54_years	chr13	49495593	49495620	49495619	+	High_confidence	3	3	8	0.356197	2.750000	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495609	49528992	PHF11|NM_001040443.2	+	49495609,49506634,49513058,49518017,49520893,49522042,49523174,49524084,49526386,49528510	49496095,49506756,49513166,49518151,49520940,49522107,49523241,49524216,49526458,49528992	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	18	18	24	1.068592	3.708132	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr7	137254967	137254969	137254968	-	RAMPAGE_only	8	11	14	0.623345	2.873141	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.928571
esophagus_squamous_epithelium_male_adult_54_years	chr17	2955427	2955473	2955427	+	RAMPAGE_only	4	4	21	0.935018	4.297079	chr17	2954896	2955590	LINE|L1|L1MB5	-	chr17	2853746	3037738	STRG.84793.1	+	2853746,2905283,2957758,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2854102,2905368,2957794,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037738	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chrX	70453688	70453689	70453688	+	RAMPAGE_only	12	12	16	0.712395	3.323231	chrX	70453648	70453712	DNA|hAT-Ac|OldhAT1	+	chrX	70452304	70505487	DLG3|ENST00000374355.7	+	70452304,70453636,70454213,70479149,70492106,70492520,70493375,70497179,70498519,70499175,70499876,70500470,70500897,70502162	70452755,70453793,70454316,70479264,70492283,70492596,70493475,70497221,70498570,70499277,70500049,70500580,70500989,70505487	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr22	21001558	21001586	21001577	-	High_confidence	2	2	9	0.400722	3.000000	chr22	21001557	21001648	SINE|MIR|MIR	-	chr22	21000271	21001518	THAP7|ENST00000488975.1	-	21000271,21000646,21001255	21000432,21000729,21001518	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr7	141674445	141674464	141674463	-	RAMPAGE_only	4	4	8	0.356197	2.807355	chr7	141674396	141674980	LTR|ERVL|LTR84b	+	chr7	141661929	141701615	KIAA1147|ENST00000482493.1	-	141661929,141664171,141664903,141665186,141666286,141674066,141685477,141686558,141701555	141662851,141664240,141665054,141665318,141666386,141674220,141685636,141686658,141701615	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr7	134565108	134565109	134565108	+	High_confidence	24	24	25	1.113117	4.084963	chr7	134564837	134565429	LTR|ERV1|LTR10D	+	chr7	134564787	134570474	AKR1B15|ENST00000467156.1	+	134564787,134568157,134569412	134565546,134568325,134570474	0.920000
esophagus_squamous_epithelium_male_adult_54_years	chr19	41656795	41656869	41656857	-	RAMPAGE_only	7	7	37	1.647413	3.461725	chr19	41656796	41663167	LINE|L1|L1PA7	+	chr19	41631009	41663356	STRG.92350.2	-	41631009,41651501,41663210	41641858,41651631,41663356	0.864865
esophagus_squamous_epithelium_male_adult_54_years	chr16	2757853	2757944	2757853	+	High_confidence	3	5	32	1.424790	4.413910	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.781250
esophagus_squamous_epithelium_male_adult_54_years	chr19	55280196	55280219	55280218	-	High_confidence	11	13	39	1.736462	3.677804	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.923077
esophagus_squamous_epithelium_male_adult_54_years	chr2	58117420	58117425	58117420	+	RAMPAGE_only	2	3	6	0.267148	2.584963	chr2	58115749	58118686	LTR|ERV1|HERVH-int	-	chr2	58120765	58159784	STRG.11585.7	+	58120765,58131807,58135140,58139665,58146315,58154758,58159348	58123233,58131928,58135199,58139832,58146474,58154802,58159784	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr3	197546731	197546736	197546731	-	RAMPAGE_only	44	81	140	6.233454	6.198622	chr3	197546665	197546787	SINE|MIR|MIR3	+	chr3	197532411	197555956	STRG.25572.11	-	197532411,197533488,197546360,197555780	197532522,197538952,197546486,197555956	0.664286
esophagus_squamous_epithelium_male_adult_54_years	chr1	9894139	9894187	9894186	-	High_confidence	2	2	8	0.356197	3.000000	chr1	9894071	9894347	LINE|L1|L1MC4	-	chr1	9850449	9893237	CTNNBIP1|ENST00000377258.5	-	9850449,9871186,9871968,9877904,9893008	9850776,9871277,9872088,9877989,9893237	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr2	9554940	9554971	9554965	-	High_confidence	3	4	14	0.623345	3.664498	chr2	9554869	9555063	DNA|hAT-Tip100?|MamRep1879	-	chr2	9488636	9554729	ADAM17|ENST00000648548.1	-	9488636,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152,9551474,9554708	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526264,9527954,9535922,9536828,9543285,9551757,9554729	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr13	44804996	44805007	44805006	-	High_confidence	4	4	11	0.489771	3.277613	chr13	44804977	44805053	SINE|Alu|AluYh7	+	chr13	44799432	44805002	STRG.73869.1	-	44799432,44804719	44801005,44805002	0.636364
esophagus_squamous_epithelium_male_adult_54_years	chr18	46087012	46087066	46087042	-	High_confidence	14	14	35	1.558364	4.629004	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.914286
esophagus_squamous_epithelium_male_adult_54_years	chr12	123390707	123390761	123390760	+	High_confidence	4	4	24	1.068592	4.262692	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.916667
esophagus_squamous_epithelium_male_adult_54_years	chr2	215978465	215978496	215978480	-	RAMPAGE_only	6	7	20	0.890493	3.921928	chr2	215976650	215978919	LINE|L1|L1P2	+	chr2	215942804	215980828	STRG.17798.6	-	215942804,215945570,215947022,215955554,215961108	215944997,215945734,215947113,215955684,215980828	0.950000
esophagus_squamous_epithelium_male_adult_54_years	chr22	41653631	41653675	41653674	+	RAMPAGE_only	2	2	9	0.400722	3.169925	chr22	41653710	41653849	DNA|hAT-Charlie|MER5A	+	chr22	41656952	41661699	XRCC6|ENST00000478914.1	+	41656952,41658251,41661330	41657032,41658352,41661699	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr1	43915428	43915431	43915428	+	RAMPAGE_only	6	6	12	0.534296	3.459432	chr1	43915351	43915530	SINE|MIR|MIR	-	chr1	43919101	43931057	ST3GAL3|ENST00000645670.1	+	43919101,43920781,43921442,43930131	43920550,43920928,43921638,43931057	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr15	80059918	80059933	80059918	+	High_confidence	230	261	576	25.646212	5.197147	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.986111
esophagus_squamous_epithelium_male_adult_54_years	chr19	41770846	41770956	41770896	+	RAMPAGE_only	16	19	93	4.140795	4.932821	chr19	41770580	41771297	LTR|ERV1|MER65-int	+	chr19	41755519	41772208	CEACAM6|NM_002483.6	+	41755519,41756599,41761248,41761968,41766182,41770801	41755702,41756959,41761527,41762223,41766299,41772208	0.967742
esophagus_squamous_epithelium_male_adult_54_years	chr11	33141750	33141753	33141750	-	RAMPAGE_only	6	6	10	0.445247	3.121928	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33084583	33161465	CSTF3|ENST00000323959.8	-	33084583,33085712,33085894,33086987,33090531,33092270,33096305,33096834,33098689,33099033,33099607,33102176,33103106,33105566,33105882,33105997,33107902,33108385,33141666,33141884,33161298	33085289,33085773,33085989,33087141,33090727,33092340,33096408,33096978,33098764,33099150,33099717,33102339,33103184,33105693,33105917,33106064,33108000,33108418,33141762,33141986,33161465	0.900000
esophagus_squamous_epithelium_male_adult_54_years	chr15	82935294	82935326	82935294	-	RAMPAGE_only	4	4	11	0.489771	3.321928	chr15	82934248	82936442	LINE|L2|L2a	+	chr15	82848982	82952721	HOMER2|ENST00000450735.6	-	82848982,82851150,82852141,82854643,82859028,82864166,82875272,82892684,82952530	82849903,82851231,82852252,82854800,82859135,82864259,82875404,82892841,82952721	0.636364
esophagus_squamous_epithelium_male_adult_54_years	chr19	20423696	20423704	20423696	-	RAMPAGE_only	2	3	7	0.311673	2.521641	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr17	41663709	41663780	41663736	+	High_confidence	4	4	24	1.068592	4.584963	chr17	41663578	41663971	LINE|L2|L2a	-	chr17	41663738	41664323	STRG.86629.1	+	41663738	41664323	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr5	172958875	172958919	172958915	+	High_confidence	20	22	85	3.784597	4.642392	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.976471
esophagus_squamous_epithelium_male_adult_54_years	chr10	103746701	103746702	103746701	+	High_confidence	11	12	12	0.534296	3.418296	chr10	103746609	103747070	LINE|L2|L2b	+	chr10	103746778	103755409	SH3PXD2A-AS1|NR_038940.1	+	103746778,103749781,103753843	103747096,103749920,103755409	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr1	89272854	89272887	89272859	-	High_confidence	42	45	272	12.110711	5.970101	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.966912
esophagus_squamous_epithelium_male_adult_54_years	chr1	75375885	75375937	75375936	-	High_confidence	78	79	280	12.466909	5.783342	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75201981	75375928	STRG.3585.1	-	75201981,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75203833,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75375928	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr4	8436122	8436139	8436138	+	High_confidence	17	17	29	1.291216	4.487123	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8436139	8439301	TRMT44|ENST00000532937.1	+	8436139,8438791	8436399,8439301	0.965517
esophagus_squamous_epithelium_male_adult_54_years	chr17	35085070	35085071	35085070	-	RAMPAGE_only	21	22	23	1.024068	4.201841	chr17	35085029	35085098	DNA|hAT-Charlie|MER5A	+	chr17	35012048	35089247	STRG.86056.3	-	35012048,35014739,35016369,35017522,35021370,35026373,35063575,35089104	35012149,35014763,35016580,35017606,35021781,35026561,35063850,35089247	0.869565
esophagus_squamous_epithelium_male_adult_54_years	chr15	82404225	82404237	82404225	+	RAMPAGE_only	2	3	7	0.311673	2.521641	chr15	82404027	82404339	SINE|Alu|AluSz	+	chr15	82355135	82415611	UBE2Q2P2|NR_004847.3	+	82355135,82400659,82404611,82408287,82414600	82355374,82400716,82404751,82408367,82415611	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr7	39013096	39013154	39013108	+	High_confidence	5	5	24	1.068592	3.599484	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.791667
esophagus_squamous_epithelium_male_adult_54_years	chr4	40619633	40619652	40619651	-	RAMPAGE_only	3	3	7	0.311673	2.521641	chr4	40619430	40619893	LINE|L2|L2a	+	chr4	40423680	40629864	RBM47|ENST00000510871.5	-	40423680,40432650,40436440,40437770,40466576,40544421,40629395	40426143,40432862,40436885,40438924,40466699,40544506,40629864	0.571429
esophagus_squamous_epithelium_male_adult_54_years	chrX	16712872	16712907	16712889	-	High_confidence	4	4	12	0.534296	3.277613	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.916667
esophagus_squamous_epithelium_male_adult_54_years	chr1	86549212	86549224	86549212	+	RAMPAGE_only	3	3	8	0.356197	2.807355	chr1	86549018	86549901	LINE|L2|L2a	-	chr1	86547077	86580754	CLCA4|ENST00000370563.3	+	86547077,86559931,86560210,86563660,86565273,86565801,86567423,86571076,86572613,86574539,86575331,86577901,86579353,86579941	86547278,86560072,86560358,86563769,86565451,86566020,86567651,86571254,86572720,86574755,86575599,86578072,86579587,86580754	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr1	51403428	51403484	51403428	-	RAMPAGE_only	7	7	20	0.890493	4.142664	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.850000
esophagus_squamous_epithelium_male_adult_54_years	chr17	32684271	32684272	32684271	-	RAMPAGE_only	24	26	35	1.558364	4.862576	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32494718	32659406	MYO1D|ENST00000577352.5	-	32494718,32605086,32638721,32653842,32654476,32659114	32494915,32605241,32638835,32653947,32654621,32659406	0.542857
esophagus_squamous_epithelium_male_adult_54_years	chr10	93431475	93431486	93431475	-	RAMPAGE_only	3	3	9	0.400722	2.750000	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chr20	13493438	13493455	13493438	+	High_confidence	7	7	18	0.801444	3.725481	chr20	13493277	13493787	LTR|ERVL|MLT2B3	+	chr20	13493388	13498422	STRG.94216.1	+	13493388,13496078	13493705,13498422	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr7	134527596	134527597	134527596	+	High_confidence	7506	7753	9869	439.414007	7.650260	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.988550
esophagus_squamous_epithelium_male_adult_54_years	chr7	93114971	93114996	93114971	-	RAMPAGE_only	4	4	13	0.578821	3.251629	chr7	93114834	93115061	LINE|L1|L1MEg2	+	chr7	93102248	93117962	SAMD9|ENST00000446617.1	-	93102248,93117862	93106105,93117962	0.923077
esophagus_squamous_epithelium_male_adult_54_years	chrX	119441077	119441083	119441077	+	RAMPAGE_only	2	2	7	0.311673	2.584963	chrX	119435468	119441493	LINE|L1|L1HS	-	chrX	119399408	119453182	SLC25A43|ENST00000493093.5	+	119399408,119410189,119452008,119452864	119399678,119410362,119452143,119453182	0.571429
esophagus_squamous_epithelium_male_adult_54_years	chr12	14665626	14665645	14665635	+	High_confidence	16	25	64	2.849579	4.821470	chr12	14665652	14665749	LINE|L2|L2a	+	chr12	14665654	14757963	AC010168.1|ENST00000501178.2	+	14665654,14665858,14672265,14718034,14757594	14665697,14666013,14672314,14718075,14757963	0.953125
esophagus_squamous_epithelium_male_adult_54_years	chr12	53251611	53251654	53251611	+	High_confidence	8	8	25	1.113117	4.022055	chr12	53251547	53251701	SINE|MIR|MIRc	-	chr12	53251585	53254405	MFSD5|ENST00000534842.1	+	53251585,53252817	53252035,53254405	0.960000
esophagus_squamous_epithelium_male_adult_54_years	chr7	134549014	134549061	134549058	+	High_confidence	2	3	10	0.445247	2.921928	chr7	134549070	134551552	LTR|ERV1|HERVS71-int	+	chr7	134549096	134579840	AKR1B15|NM_001080538.2	+	134549096,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579840	0.900000
esophagus_squamous_epithelium_male_adult_54_years	chr6	6799197	6799237	6799197	-	RAMPAGE_only	17	18	100	4.452467	6.202441	chr6	6799038	6799370	LTR|ERVL-MaLR|MSTC	-	chr6	6775753	6803424	STRG.37412.3	-	6775753,6792685,6794149	6790190,6792769,6803424	0.520000
esophagus_squamous_epithelium_male_adult_54_years	chr9	127561591	127561611	127561591	-	RAMPAGE_only	11	12	45	2.003610	4.446974	chr9	127561458	127561604	SINE|MIR|MIRb	-	chr9	127507171	127568953	FAM129B|ENST00000468379.1	-	127507171,127507866,127525057,127527193,127531647,127568819	127507431,127507934,127525163,127527322,127531778,127568953	0.600000
esophagus_squamous_epithelium_male_adult_54_years	chr10	133523673	133523798	133523673	-	RAMPAGE_only	165	168	938	41.764144	8.231534	chr10	133523363	133523706	LINE|L1|L1ME3G	+	chr10	133464936	133525019	STRG.63210.3	-	133464936,133509212,133514219	133473245,133509289,133525019	0.787846
esophagus_squamous_epithelium_male_adult_54_years	chr5	119420434	119420441	119420440	+	RAMPAGE_only	61	91	166	7.391096	6.276586	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.753012
esophagus_squamous_epithelium_male_adult_54_years	chr13	20412197	20412217	20412200	-	RAMPAGE_only	4	4	24	1.068592	4.349649	chr13	20412001	20412273	LINE|CR1|L3	-	chr13	20403666	20457141	STRG.73137.2	-	20403666,20404634,20413281,20432101,20439592,20457088	20404242,20404741,20413387,20432296,20439754,20457141	0.791667
esophagus_squamous_epithelium_male_adult_54_years	chr12	10362424	10362425	10362424	+	RAMPAGE_only	12	12	14	0.623345	3.238901	chr12	10362140	10362659	LTR|ERV1|LTR10C	+	chr12	10363642	10380814	STRG.68593.1	+	10363642,10374034,10379701	10364033,10374136,10380814	0.785714
esophagus_squamous_epithelium_male_adult_54_years	chr13	29647584	29647666	29647624	+	High_confidence	16	17	57	2.537906	5.315175	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.754386
esophagus_squamous_epithelium_male_adult_54_years	chr12	21472448	21472449	21472448	-	RAMPAGE_only	9	9	11	0.489771	3.459432	chr12	21472270	21472755	LTR|ERV1|MER66D	-	chr12	21469801	21501551	RECQL|ENST00000421138.6	-	21469801,21470968,21471427,21473550,21474840,21475467,21475675,21476910,21477802,21483375,21486478,21490198,21491518,21499554,21501169,21501412	21470346,21471098,21471647,21473642,21474979,21475585,21475824,21476992,21477969,21483574,21486585,21490378,21491716,21499615,21501215,21501551	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr7	99410146	99410147	99410146	+	High_confidence	7	8	11	0.489771	3.277613	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.909091
esophagus_squamous_epithelium_male_adult_54_years	chr20	17505787	17505805	17505787	-	RAMPAGE_only	4	4	14	0.623345	3.180833	chr20	17505736	17505868	DNA|hAT-Charlie|MER5A	+	chr20	17493904	17531369	BFSP1|NM_001195.4	-	17493904,17496937,17498819,17508888,17511975,17514720,17524847,17530952	17495029,17497023,17499040,17508996,17512068,17514816,17524908,17531369	0.928571
esophagus_squamous_epithelium_male_adult_54_years	chr10	103395923	103395967	103395966	-	High_confidence	3	3	7	0.311673	2.521641	chr10	103395615	103395992	LINE|RTE-X|L4_C_Mam	+	chr10	103389049	103396074	ATP5MD|ENST00000369811.5	-	103389049,103392190,103392370,103395745	103389166,103392283,103392466,103396074	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr2	218290091	218290125	218290124	-	High_confidence	6	6	18	0.801444	4.058814	chr2	218290106	218290347	DNA|hAT-Charlie|MER103C	-	chr2	218277934	218290089	TMBIM1|ENST00000429501.5	-	218277934,218278514,218279037,218279288,218280025,218281939,218289965	218277974,218278565,218279091,218279353,218280126,218282181,218290089	0.722222
esophagus_squamous_epithelium_male_adult_54_years	chr1	34754775	34754799	34754796	+	High_confidence	8	8	41	1.825512	4.732927	chr1	34754671	34754841	SINE|MIR|MIR	-	chr1	34755046	34758512	GJB5|NM_005268.3	+	34755046,34757306	34755195,34758512	0.951220
esophagus_squamous_epithelium_male_adult_54_years	chr12	643625	643636	643627	-	High_confidence	15	25	49	2.181709	4.668387	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.938776
esophagus_squamous_epithelium_male_adult_54_years	chr21	39657315	39657323	39657322	+	High_confidence	4	4	8	0.356197	2.750000	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657319	39662889	B3GALT5|NM_033171.2	+	39657319,39657784,39659752,39660559	39657599,39657893,39659912,39662889	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr14	22566396	22566445	22566410	-	RAMPAGE_only	4	4	19	0.845969	3.572431	chr14	22566338	22566626	SINE|Alu|AluSp	-	chr14	22564906	22575089	DAD1|ENST00000489532.6	-	22564906,22567087,22575058	22565137,22567164,22575089	0.947368
esophagus_squamous_epithelium_male_adult_54_years	chr22	23696423	23696465	23696423	+	High_confidence	2	2	11	0.489771	3.121928	chr22	23696381	23696442	SINE|MIR|MIRb	-	chr22	23696483	23699176	RGL4|ENST00000452208.1	+	23696483,23697170,23697837,23698211,23698843	23696688,23697245,23697861,23698333,23699176	0.909091
esophagus_squamous_epithelium_male_adult_54_years	chr17	4143199	4143244	4143199	+	High_confidence	47	48	136	6.055356	5.725132	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.992647
esophagus_squamous_epithelium_male_adult_54_years	chr10	4678176	4678204	4678176	-	High_confidence	2	2	12	0.534296	3.027169	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.583333
esophagus_squamous_epithelium_male_adult_54_years	chr2	58113010	58113034	58113033	+	High_confidence	5	6	14	0.623345	3.546594	chr2	58113028	58113330	SINE|Alu|AluSg	+	chr2	58112484	58159784	STRG.11585.5	+	58112484,58123100,58131807,58135140,58139665,58146315,58154753,58159348	58113510,58123233,58131928,58135199,58139832,58146474,58154802,58159784	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr7	154928474	154928504	154928503	+	High_confidence	5	5	12	0.534296	3.459432	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr3	51387556	51387565	51387556	+	High_confidence	3	3	13	0.578821	3.546594	chr3	51387476	51387632	SINE|Alu|AluJb	+	chr3	51387687	51389149	MANF|ENST00000482262.1	+	51387687,51388904	51387878,51389149	0.846154
esophagus_squamous_epithelium_male_adult_54_years	chr4	86453184	86453203	86453202	-	High_confidence	6	7	17	0.756919	3.500000	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.823529
esophagus_squamous_epithelium_male_adult_54_years	chr11	93734753	93734792	93734790	-	High_confidence	2	4	8	0.356197	3.000000	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730282	93734661	TAF1D|ENST00000525928.5	-	93730282,93730676,93731149,93731752,93732243,93733086,93733349	93730447,93730712,93731216,93731799,93732291,93733121,93734661	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr16	27675236	27675242	27675241	-	RAMPAGE_only	3	3	7	0.311673	2.521641	chr16	27675073	27675427	LTR|ERVL-MaLR|THE1B	-	chr16	27669661	27670614	STRG.82838.1	-	27669661,27670374	27669684,27670614	0.571429
esophagus_squamous_epithelium_male_adult_54_years	chr22	45162437	45162438	45162437	+	High_confidence	29	30	32	1.424790	4.640224	chr22	45162109	45162544	LTR|ERV1|LTR7Y	+	chr22	45162449	45162853	STRG.98627.1	+	45162449	45162853	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr1	9894235	9894252	9894251	-	RAMPAGE_only	20	20	73	3.250301	5.749582	chr1	9894071	9894347	LINE|L1|L1MC4	-	chr1	9850449	9893237	CTNNBIP1|ENST00000377258.5	-	9850449,9871186,9871968,9877904,9893008	9850776,9871277,9872088,9877989,9893237	0.794521
esophagus_squamous_epithelium_male_adult_54_years	chr2	240022172	240022173	240022172	-	RAMPAGE_only	9	9	13	0.578821	2.719295	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr9	20658376	20658453	20658426	+	High_confidence	4	4	14	0.623345	3.664498	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658348	20770112	STRG.54491.5	+	20658348,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr8	56559496	56559497	56559496	-	High_confidence	6	6	6	0.267148	2.584963	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr19	55069739	55069775	55069774	-	High_confidence	19	27	98	4.363418	5.979356	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55044323	55069546	RDH13|NM_138412.3	-	55044323,55047386,55048328,55048658,55056652,55059156,55064295,55069321	55045309,55047488,55048541,55048763,55056808,55059275,55064412,55069546	0.632653
esophagus_squamous_epithelium_male_adult_54_years	chr19	48868595	48868631	48868613	-	High_confidence	142	152	616	27.427199	7.343090	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.995130
esophagus_squamous_epithelium_male_adult_54_years	chr3	58842222	58842254	58842222	-	RAMPAGE_only	5	5	21	0.935018	3.746439	chr3	58842154	58848179	LINE|L1|L1PA2	+	chr3	58725867	58849226	C3orf67|ENST00000484535.5	-	58725867,58734471,58753768,58806394,58831685,58849031	58728137,58734558,58753863,58806456,58831889,58849226	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr1	171129839	171129873	171129849	-	High_confidence	6	13	36	1.602888	4.794653	chr1	171129628	171130038	LTR|ERVL-MaLR|MSTB	-	chr1	171119893	171129930	STRG.6713.1	-	171119893,171121749,171129713	171120556,171121863,171129930	0.583333
esophagus_squamous_epithelium_male_adult_54_years	chr1	228121291	228121292	228121291	-	High_confidence	17	17	22	0.979543	3.913977	chr1	228121183	228121606	LTR|ERV1|MER57A1	-	chr1	228119003	228121307	STRG.8642.1	-	228119003,228121057	228119958,228121307	0.545455
esophagus_squamous_epithelium_male_adult_54_years	chr3	185340787	185340788	185340787	+	RAMPAGE_only	7	7	10	0.445247	3.169925	chr3	185340596	185340972	LTR|ERVL-MaLR|THE1D	+	chr3	185339770	185342484	STRG.25131.1	+	185339770	185342484	0.700000
esophagus_squamous_epithelium_male_adult_54_years	chr7	64999443	64999444	64999443	-	RAMPAGE_only	118	125	130	5.788208	6.319952	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64971775	65006653	STRG.45958.1	-	64971775,64981386,64981983,64989946,65006540	64979536,64981482,64982116,64993414,65006653	0.561538
esophagus_squamous_epithelium_male_adult_54_years	chr22	35896684	35896717	35896687	-	RAMPAGE_only	9	14	31	1.380265	4.567100	chr22	35896673	35896791	LINE|L2|L2	+	chr22	35743982	35938897	RBFOX2|ENST00000359369.8	-	35743982,35745922,35746472,35750425,35756104,35759887,35761201,35761414,35765422,35768256,35778024,35781599,35809779,35938846	35744249,35745995,35746561,35750457,35756144,35760020,35761294,35761468,35765483,35768349,35778078,35781743,35810004,35938897	0.774194
esophagus_squamous_epithelium_male_adult_54_years	chr1	93324878	93324885	93324884	-	High_confidence	5	5	14	0.623345	3.235926	chr1	93324761	93324840	LINE|CR1|L3b	-	chr1	93264646	93324691	CCDC18-AS1|ENST00000415150.5	-	93264646,93305387,93315148,93318167,93324634	93264772,93305470,93315269,93318228,93324691	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr11	65439440	65439483	65439447	+	RAMPAGE_only	6	10	54	2.404332	4.977588	chr11	65439400	65439684	SINE|Alu|AluSz6	+	chr11	65425550	65445540	STRG.65573.5	+	65425550,65437252	65437175,65445540	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr6	149857186	149857203	149857202	-	RAMPAGE_only	9	10	22	0.979543	4.152391	chr6	149857081	149857249	LTR|ERV1|LTR8	+	chr6	149818797	149864026	LRP11|ENST00000239367.6	-	149818797,149826263,149836084,149837337,149842982,149853002,149863407	149820703,149826359,149836297,149837463,149843124,149853160,149864026	0.818182
esophagus_squamous_epithelium_male_adult_54_years	chr13	48504303	48504385	48504340	-	RAMPAGE_only	8	8	64	2.849579	3.500625	chr13	48503990	48504484	LINE|L2|L2	+	chr13	48488974	48508259	STRG.74080.4	-	48488974,48496190,48499620,48501741,48502723,48504225	48490251,48496321,48499760,48501868,48502914,48508259	0.953125
esophagus_squamous_epithelium_male_adult_54_years	chr15	89505745	89505772	89505745	+	High_confidence	6	7	17	0.756919	3.852169	chr15	89505585	89505789	SINE|MIR|MIRb	-	chr15	89505286	89506807	STRG.81448.1	+	89505286	89506807	0.941176
esophagus_squamous_epithelium_male_adult_54_years	chr3	11225885	11225915	11225885	-	High_confidence	7	8	36	1.602888	4.771143	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.583333
esophagus_squamous_epithelium_male_adult_54_years	chr17	50108017	50108034	50108017	+	High_confidence	3	3	10	0.445247	3.169925	chr17	50107994	50108062	LTR|ERVL-MaLR|MLT1J	-	chr17	50108007	50109984	PDK2|ENST00000506647.1	+	50108007,50108611,50109286,50109956	50108417,50108719,50109400,50109984	0.600000
esophagus_squamous_epithelium_male_adult_54_years	chr16	15740056	15740078	15740077	-	RAMPAGE_only	7	7	25	1.113117	4.483856	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr17	11974141	11974175	11974174	+	RAMPAGE_only	3	3	10	0.445247	3.169925	chr17	11972189	11975291	LTR|ERV1|HERVH-int	+	chr17	11971928	11977000	STRG.85314.3	+	11971928,11973569	11972335,11977000	0.800000
esophagus_squamous_epithelium_male_adult_54_years	chr11	76963799	76963815	76963799	+	RAMPAGE_only	4	5	9	0.400722	2.947703	chr11	76963833	76969955	LINE|L1|L1PA4	+	chr11	76926556	77015106	ACER3|ENST00000527508.1	+	76926556,76958978,76976288,76985642,76990538,76998762,77011329,77015015	76926667,76959031,76976341,76985724,76990574,76998821,77011375,77015106	0.555556
esophagus_squamous_epithelium_male_adult_54_years	chrX	95948496	95948510	95948496	-	High_confidence	5	6	20	0.890493	3.536887	chrX	95948367	95948802	LTR|ERVL|LTR16A1	+	chrX	95947964	95948538	STRG.101497.1	-	95947964	95948538	0.900000
esophagus_squamous_epithelium_male_adult_54_years	chr14	55796687	55796688	55796687	-	High_confidence	33	37	43	1.914561	4.948896	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796688	LINC00520|ENST00000649892.1	-	55781136,55793367,55796602	55782581,55793456,55796688	0.720930
esophagus_squamous_epithelium_male_adult_54_years	chr5	70401442	70401472	70401471	+	RAMPAGE_only	4	4	13	0.578821	3.085055	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr1	97904734	97904735	97904734	-	RAMPAGE_only	4	4	6	0.267148	2.584963	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr5	133583660	133583729	133583699	-	High_confidence	5	6	41	1.825512	4.015312	chr5	133583288	133589299	LINE|L1|L1HS	+	chr5	133220723	133583641	STRG.35313.1	-	133220723,133224189,133225149,133225657,133233416,133249409,133312653,133316458,133400737,133567185,133583264	133220866,133224216,133225284,133225819,133233537,133249576,133312777,133316652,133400986,133567219,133583641	0.682927
esophagus_squamous_epithelium_male_adult_54_years	chr2	233691673	233691710	233691709	+	High_confidence	92	98	313	13.936223	7.278157	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233691709	233772341	UGT1A6|ENST00000446481.6	+	233691709,233693798,233767033,233767848,233768219,233769530,233772261	233691820,233693865,233767165,233767936,233768439,233769664,233772341	0.533546
esophagus_squamous_epithelium_male_adult_54_years	chr3	193837447	193837479	193837470	-	RAMPAGE_only	13	14	58	2.582431	5.251651	chr3	193837444	193837604	LTR|ERVL-MaLR|MLT1N2	+	chr3	193826020	193835756	STRG.25527.1	-	193826020	193835756	0.689655
esophagus_squamous_epithelium_male_adult_54_years	chr11	72135708	72135725	72135708	+	High_confidence	10	10	16	0.712395	3.625000	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr2	58118926	58118972	58118931	-	High_confidence	5	5	18	0.801444	3.969816	chr2	58118697	58119130	LTR|ERV1|LTR7Y	-	chr2	58095805	58118787	STRG.11588.1	-	58095805	58118787	0.777778
esophagus_squamous_epithelium_male_adult_54_years	chr14	80231057	80231058	80231057	-	High_confidence	1865	1884	2033	90.518662	8.227066	chr14	80230830	80231256	LTR|ERVL|MLT2A1	-	chr14	80202818	80231054	STRG.77390.7	-	80202818,80206230,80211250,80211833	80203288,80206338,80211525,80231054	0.828333
esophagus_squamous_epithelium_male_adult_54_years	chr20	3795750	3795772	3795750	+	High_confidence	3	3	14	0.623345	3.546594	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.928571
esophagus_squamous_epithelium_male_adult_54_years	chr1	155058784	155058785	155058784	+	High_confidence	7	7	10	0.445247	2.947703	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.900000
esophagus_squamous_epithelium_male_adult_54_years	chr4	86453260	86453296	86453260	-	High_confidence	1	1	8	0.356197	2.521641	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86194393	86453278	MAPK10|ENST00000638867.2	-	86194393,86354529,86392313,86399746,86453029	86194407,86354644,86392432,86399806,86453278	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr8	8177023	8177053	8177041	+	High_confidence	5	6	30	1.335740	4.415061	chr8	8172260	8180087	LTR|ERV1|HERVE-int	+	chr8	8177240	8180379	STRG.49812.1	+	8177240	8180379	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr6	75831786	75831787	75831786	+	RAMPAGE_only	15	15	21	0.935018	3.471354	chr6	75831621	75831911	SINE|Alu|AluJr	+	chr6	75817523	75915177	MYO6|ENST00000627432.2	+	75817523,75822781,75828539,75830415,75832841,75835900,75840584,75841213,75844896,75848350,75855138,75857096,75858901,75861022,75862595,75866525,75866931,75870646,75873206,75879819,75880042,75881688,75886003,75886843,75890056,75891227,75892529,75894813,75895230,75898372,75907604,75908495,75911671,75914062,75914812	75817664,75822851,75828613,75830545,75832947,75835956,75840682,75841378,75844977,75848531,75855283,75857254,75858993,75861095,75862723,75866621,75867105,75870685,75873300,75879950,75880120,75881818,75886094,75886994,75890265,75891306,75892690,75894840,75895260,75898411,75907708,75908627,75911698,75914281,75915177	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr9	92077156	92077157	92077156	-	RAMPAGE_only	9	11	14	0.623345	3.664498	chr9	92072526	92078223	LTR|ERV1|HERVH-int	+	chr9	92028457	92080076	SPTLC1|ENST00000646481.1	-	92028457,92029179,92034809,92038247,92045998,92046274,92047171,92047612,92049959,92055404,92059178,92067965,92076797,92080015	92028757,92029346,92034883,92038365,92046053,92046334,92047268,92047708,92050067,92055494,92059308,92068098,92077035,92080076	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr11	65181205	65181246	65181222	+	High_confidence	6	6	27	1.202166	4.088221	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr1	209429200	209429330	209429238	+	High_confidence	59	64	402	17.898919	6.599300	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.788557
esophagus_squamous_epithelium_male_adult_54_years	chr2	95825758	95825786	95825758	-	RAMPAGE_only	2	3	6	0.267148	2.584963	chr2	95824349	95826979	LINE|L1|L1PA10	-	chr2	95807051	95826981	LINC00342|NR_103734.1	-	95807051,95814049,95824200	95807302,95814145,95826981	0.833333
esophagus_squamous_epithelium_male_adult_54_years	chr4	169697606	169697626	169697625	+	RAMPAGE_only	3	3	8	0.356197	3.000000	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169695630	169706888	CLCN3|ENST00000515420.1	+	169695630,169697188,169697360,169703997,169706867	169695692,169697279,169697734,169704184,169706888	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr1	45522855	45522859	45522858	-	High_confidence	282	283	476	21.193745	5.931004	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.991597
esophagus_squamous_epithelium_male_adult_54_years	chr2	229586860	229586906	229586868	-	High_confidence	4	4	25	1.113117	4.251629	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229357790	229586877	STRG.18170.1	-	229357790,229366872,229388264,229407231,229418107,229447315,229477139,229512782,229546946,229585857,229586693	229358651,229367119,229388396,229407345,229418230,229447540,229477253,229512936,229547092,229586024,229586877	0.920000
esophagus_squamous_epithelium_male_adult_54_years	chr6	161315244	161315247	161315244	-	High_confidence	141	148	203	9.038509	5.690150	chr6	161315114	161315515	LTR|ERV1|LTR10F	-	chr6	161275292	161315222	STRG.43245.5	-	161275292,161307208	161290168,161315222	0.950739
esophagus_squamous_epithelium_male_adult_54_years	chr10	84171971	84171989	84171988	-	High_confidence	9	10	18	0.801444	3.572469	chr10	84171609	84171986	LTR|ERV1|Harlequin-int	-	chr10	84167227	84172076	HOST2|NR_134505.1	-	84167227,84171721	84168729,84172076	0.777778
esophagus_squamous_epithelium_male_adult_54_years	chr3	42809427	42809476	42809475	+	High_confidence	9	9	26	1.157642	4.103465	chr3	42809252	42809581	LTR|ERV1|MER39	-	chr3	42809491	42864876	ACKR2|ENST00000497921.2	+	42809491,42819630,42839093,42864465	42809532,42819711,42839279,42864876	0.615385
esophagus_squamous_epithelium_male_adult_54_years	chr14	74614956	74614957	74614956	-	RAMPAGE_only	5	5	8	0.356197	3.000000	chr14	74614923	74615241	LTR|ERV1|LTR78B	-	chr14	74500410	74612378	LTBP2|ENST00000553939.5	-	74500410,74501440,74502563,74503218,74503468,74503925,74504777,74504982,74506047,74506697,74507178,74507972,74508603,74508829,74509237,74509733,74510090,74511244,74516821,74521910,74522789,74525123,74526074,74527346,74528482,74528957,74532425,74535925,74549862,74551063,74552186,74552891,74555502,74585853,74603634,74611450	74501029,74501590,74502934,74503386,74503606,74504054,74504861,74505174,74506191,74506823,74507310,74508095,74508729,74508952,74509363,74509859,74510213,74511364,74516941,74522039,74522918,74525225,74526114,74527366,74528698,74529122,74532548,74536000,74549965,74551350,74552393,74553062,74555693,74586118,74603705,74612378	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr9	121498595	121498599	121498595	-	RAMPAGE_only	2	2	7	0.311673	2.584963	chr9	121498508	121498653	SINE|MIR|MIRb	-	chr9	121444990	121499757	GGTA1P|ENST00000495328.5	-	121444990,121455654,121460103,121461251,121463292,121467842,121479065,121499649	121447597,121455841,121460219,121461317,121463328,121467931,121479334,121499757	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr7	150323728	150323785	150323750	-	High_confidence	10	10	39	1.736462	4.355539	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150243918	150323725	STRG.49304.3	-	150243918,150284752,150286366,150289544,150293311,150295251,150323468	150249054,150284845,150286540,150289593,150293419,150295347,150323725	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr13	48580933	48580934	48580933	-	High_confidence	7	7	11	0.489771	3.277613	chr13	48580763	48581196	LTR|ERVL-MaLR|THE1B	-	chr13	48576973	48580901	LINC00462|NR_051983.1	-	48576973,48578012,48580840	48577859,48578088,48580901	0.818182
esophagus_squamous_epithelium_male_adult_54_years	chr12	10363645	10363663	10363662	+	High_confidence	4	6	9	0.400722	3.000000	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363642	10380814	STRG.68593.1	+	10363642,10374034,10379701	10364033,10374136,10380814	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr3	58526760	58526766	58526765	-	High_confidence	72	75	110	4.897714	5.473921	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	0.990909
esophagus_squamous_epithelium_male_adult_54_years	chr3	194486575	194486632	194486631	-	High_confidence	2	2	9	0.400722	2.947703	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chr14	88748392	88748393	88748392	-	RAMPAGE_only	7	7	7	0.311673	2.807355	chr14	88747842	88749662	LINE|L1|L1MEc	+	chr14	88615817	88792503	EML5|ENST00000380664.9	-	88615817,88616141,88616725,88618227,88618649,88620753,88621112,88622603,88624969,88626837,88627645,88634468,88638808,88642892,88644432,88657375,88658186,88661653,88663030,88664492,88665336,88681889,88685014,88687215,88688270,88694306,88695360,88696846,88702445,88704859,88705481,88706258,88712270,88714938,88726540,88736363,88738878,88740386,88744022,88746184,88754511,88792306	88615854,88616242,88616879,88618331,88618812,88620926,88621301,88622718,88625127,88627046,88627819,88634489,88638907,88643022,88644511,88657502,88658388,88661830,88663119,88664624,88665489,88682031,88685142,88687327,88688473,88694407,88695454,88696952,88702632,88704978,88705588,88706426,88712483,88715195,88726678,88736565,88739014,88740572,88744091,88746283,88754671,88792503	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr15	34154833	34154834	34154833	-	High_confidence	18	18	21	0.935018	4.121928	chr15	34154725	34155010	LTR|ERV1|LTR10A	-	chr15	34147202	34154831	KATNBL1|ENST00000560308.5	-	34147202,34147379,34148631,34152789,34154643	34147289,34147430,34148750,34153069,34154831	0.809524
esophagus_squamous_epithelium_male_adult_54_years	chr5	140697945	140697973	140697966	+	High_confidence	3	3	10	0.445247	2.947703	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140698679	140704502	ZMAT2|ENST00000519913.6	+	140698679,140700818,140702005,140703917,140704425	140698831,140700912,140702129,140703991,140704502	0.800000
esophagus_squamous_epithelium_male_adult_54_years	chr2	31496428	31496471	31496428	-	RAMPAGE_only	16	17	42	1.870036	5.028992	chr2	31496361	31500000	LINE|L1|L1P1	+	chr2	31343587	31414715	STRG.10778.3	-	31343587,31346768,31347521,31348267,31348898,31349685,31350031,31364157,31365456,31365975,31366869,31367960,31368540,31370354,31372227,31373872,31375379,31377052,31379866,31381632,31383000,31383754,31386413,31387810,31388226,31397667,31398572,31401219,31414624	31344736,31346843,31347650,31348363,31348980,31349831,31350223,31364244,31365544,31366109,31366994,31368057,31368660,31370478,31372397,31373956,31375554,31377237,31379976,31381726,31383152,31383847,31386555,31387897,31388295,31397729,31398699,31405964,31414715	0.595238
esophagus_squamous_epithelium_male_adult_54_years	chr17	60086037	60086107	60086063	-	High_confidence	4	4	27	1.202166	4.546594	chr17	60085995	60086174	DNA|hAT-Charlie|MER117	+	chr17	60083599	60085401	WFDC21P|ENST00000589777.1	-	60083599,60085102	60083766,60085401	0.518519
esophagus_squamous_epithelium_male_adult_54_years	chr19	43395773	43395805	43395773	+	High_confidence	2	5	11	0.489771	3.121928	chr19	43395659	43396151	LTR|ERVL|MLT2F	+	chr19	43395791	43396820	STRG.92518.1	+	43395791	43396820	0.818182
esophagus_squamous_epithelium_male_adult_54_years	chr4	3390598	3390612	3390598	+	RAMPAGE_only	7	9	22	0.979543	3.584184	chr4	3390637	3390750	SINE|MIR|MIR3	+	chr4	3293027	3400725	STRG.25990.14	+	3293027,3316069,3342936,3386415	3293099,3318051,3343053,3400725	0.681818
esophagus_squamous_epithelium_male_adult_54_years	chr16	2769877	2769880	2769877	+	High_confidence	2	2	7	0.311673	2.584963	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2770934	SRRM2|ENST00000574866.1	+	2769894,2770351,2770603,2770857	2770227,2770465,2770717,2770934	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr1	54852034	54852075	54852034	-	RAMPAGE_only	2	2	17	0.756919	3.452820	chr1	54851851	54852077	SINE|MIR|MIRb	-	chr1	54849663	54886890	DHCR24|ENST00000648712.1	-	54849663,54853433,54854036,54865302,54871349,54875092,54875941,54879059,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54879319,54883773,54886890	0.941176
esophagus_squamous_epithelium_male_adult_54_years	chr1	19344371	19344410	19344388	-	RAMPAGE_only	7	7	21	0.935018	4.021928	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.952381
esophagus_squamous_epithelium_male_adult_54_years	chr3	135965670	135965749	135965723	+	High_confidence	25	45	335	14.915766	6.513928	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.970149
esophagus_squamous_epithelium_male_adult_54_years	chr9	116837851	116837911	116837851	+	High_confidence	3	3	13	0.578821	3.700440	chr9	116837896	116838013	SINE|MIR|MIRc	+	chr9	116837659	116853749	STRG.57831.3	+	116837659,116841428	116839021,116853749	0.923077
esophagus_squamous_epithelium_male_adult_54_years	chr12	120810825	120810828	120810825	-	RAMPAGE_only	6	6	10	0.445247	3.169925	chr12	120810699	120810790	SINE|tRNA|LFSINE_Vert	-	chr12	120764464	120770137	SPPL3|ENST00000392495.7	-	120764464,120766262,120767393,120768324,120768952	120765070,120766372,120767593,120768488,120770137	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr11	62598026	62598072	62598052	-	RAMPAGE_only	4	5	20	0.890493	3.884184	chr11	62597909	62598004	DNA|hAT-Tip100|MER91C	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.950000
esophagus_squamous_epithelium_male_adult_54_years	chr19	15829094	15829095	15829094	+	High_confidence	45	45	47	2.092660	5.002964	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	0.851064
esophagus_squamous_epithelium_male_adult_54_years	chr17	11974227	11974240	11974227	+	RAMPAGE_only	1	1	7	0.311673	2.584963	chr17	11972189	11975291	LTR|ERV1|HERVH-int	+	chr17	11971928	11977000	STRG.85314.3	+	11971928,11973569	11972335,11977000	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr17	41773189	41773205	41773189	-	RAMPAGE_only	2	2	9	0.400722	2.947703	chr17	41773058	41773139	SINE|MIR|MIRb	-	chr17	41769625	41785155	JUP|ENST00000437369.5	-	41769625,41771646,41772817,41784946	41769677,41771862,41772926,41785155	0.555556
esophagus_squamous_epithelium_male_adult_54_years	chr11	118233609	118233640	118233639	-	RAMPAGE_only	4	4	12	0.534296	2.550341	chr11	118233565	118233711	SINE|MIR|MIR	+	chr11	118229453	118252320	MPZL3|ENST00000446386.2	-	118229453,118233459,118235423,118240210,118252221	118229920,118233523,118235589,118240377,118252320	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr15	64326659	64326660	64326659	+	High_confidence	8	8	10	0.445247	3.169925	chr15	64326660	64332685	LINE|L1|L1PA2	+	chr15	64326669	64327297	STRG.80483.1	+	64326669	64327297	0.600000
esophagus_squamous_epithelium_male_adult_54_years	chr19	5850842	5850881	5850880	-	High_confidence	7	7	38	1.691938	4.593400	chr19	5850730	5850957	SINE|Alu|AluJo	+	chr19	5844518	5851449	FUT3|ENST00000589714.1	-	5844518,5846425,5851389	5844851,5846599,5851449	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr1	47004182	47004183	47004182	+	High_confidence	74	77	87	3.873647	5.306466	chr1	47003946	47004346	LTR|ERV1|MER51B	+	chr1	47004197	47050751	STRG.2546.2	+	47004197,47029989,47031435,47033240,47035805,47036016,47038659,47039341,47046466,47048564,47049421,47049999	47004369,47030131,47031480,47033368,47035933,47036171,47038766,47039532,47046600,47048629,47049504,47050751	0.942529
esophagus_squamous_epithelium_male_adult_54_years	chr12	9407506	9407516	9407506	-	RAMPAGE_only	6	7	10	0.445247	3.321928	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9398354	9414851	AC141557.1|ENST00000540982.1	-	9398354,9400235,9402426,9414802	9398484,9400326,9402556,9414851	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr1	33021455	33021458	33021455	-	High_confidence	3	3	7	0.311673	2.807355	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010754	33021690	STRG.1556.6	-	33010754,33014521,33021366,33021592	33013402,33014594,33021461,33021690	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr9	131121448	131121452	131121451	+	RAMPAGE_only	6	6	11	0.489771	2.921928	chr9	131121449	131121629	SINE|MIR|MIR3	-	chr9	131096550	131123145	AIF1L|ENST00000372300.5	+	131096550,131096801,131111596,131114576,131117755,131120234	131096660,131096863,131111663,131114618,131117847,131123145	0.727273
esophagus_squamous_epithelium_male_adult_54_years	chr12	59569713	59569714	59569713	-	High_confidence	192	199	230	10.240675	6.406302	chr12	59569474	59569921	LTR|ERVL|MLT2A1	-	chr12	59522950	59569775	STRG.70586.1	-	59522950,59569560	59524152,59569775	0.543478
esophagus_squamous_epithelium_male_adult_54_years	chr8	127205497	127205522	127205497	-	RAMPAGE_only	3	3	13	0.578821	3.584963	chr8	127205441	127205568	SINE|MIR|MIR3	+	chr8	127204411	127218968	STRG.53260.21	-	127204411,127213125	127213091,127218968	0.846154
esophagus_squamous_epithelium_male_adult_54_years	chr17	50193944	50193960	50193950	-	High_confidence	2	2	7	0.311673	2.584963	chr17	50193783	50193912	SINE|MIR|MIR3	-	chr17	50190908	50194058	COL1A1|ENST00000476387.1	-	50190908,50191382,50191787,50191979,50192474,50192639,50192796,50192993,50193942	50190924,50191490,50191886,50192024,50192528,50192693,50192850,50193047,50194058	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr16	20674497	20674498	20674497	+	High_confidence	6	6	6	0.267148	2.584963	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr19	1134560	1134594	1134560	-	RAMPAGE_only	2	2	11	0.489771	3.321928	chr19	1134434	1134765	LINE|L1|L1MB7	+	chr19	1107633	1132274	SBNO2|NM_001100122.1	-	1107633,1108778,1109134,1109291,1109505,1109682,1110744,1111018,1111505,1111995,1112188,1112401,1112817,1113534,1114230,1116020,1116828,1117322,1119010,1119515,1119905,1122138,1122467,1122657,1122893,1123533,1123941,1127603,1132089	1108704,1108969,1109211,1109423,1109598,1109777,1110888,1111093,1111614,1112067,1112301,1112537,1112949,1113704,1114422,1116103,1116926,1117499,1119164,1119621,1120023,1122282,1122558,1122791,1123045,1123639,1124022,1127765,1132274	0.727273
esophagus_squamous_epithelium_male_adult_54_years	chr1	172040816	172040841	172040840	+	RAMPAGE_only	4	4	13	0.578821	3.188722	chr1	172040532	172041596	LINE|L2|L2c	-	chr1	171970121	172253578	DNM3|ENST00000523513.1	+	171970121,171987655,171988944,172032401,172033104,172038318,172042008,172044384,172048611,172068818,172081831,172092823,172131174,172253572	171970245,171987805,171989148,172032500,172033265,172038461,172042144,172044452,172048750,172068905,172081902,172092875,172131288,172253578	0.769231
esophagus_squamous_epithelium_male_adult_54_years	chr1	181044853	181044864	181044863	+	RAMPAGE_only	4	4	12	0.534296	3.584963	chr1	181044850	181045171	DNA|hAT-Tip100|MER115	+	chr1	181034021	181051273	MR1|ENST00000367578.1	+	181034021,181049051,181050010	181034074,181049312,181051273	0.583333
esophagus_squamous_epithelium_male_adult_54_years	chr11	34662145	34662349	34662181	+	RAMPAGE_only	18	18	250	11.131168	4.952511	chr11	34662079	34662189	LINE|L2|L2c	+	chr11	34632463	34663288	EHF|NM_001206616.1	+	34632463,34642627,34646438,34649018,34651541,34651736,34656907,34658532,34658831	34632652,34642727,34646684,34649081,34651610,34651805,34656970,34658728,34663288	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr1	195721832	195721923	195721832	+	High_confidence	44	47	95	4.229844	5.318898	chr1	195721489	195721970	LTR|ERVK|LTR14C	-	chr1	195721843	195738562	STRG.7451.1	+	195721843,195738115	195722034,195738562	0.768421
esophagus_squamous_epithelium_male_adult_54_years	chr5	67818321	67818353	67818350	-	High_confidence	4	4	16	0.712395	3.373557	chr5	67817944	67823959	LINE|L1|L1PA3	+	chr5	67699450	67818322	AC106798.1|ENST00000506819.1	-	67699450,67701490,67817939,67818279	67699725,67701652,67818048,67818322	0.562500
esophagus_squamous_epithelium_male_adult_54_years	chr12	109878875	109878897	109878896	-	RAMPAGE_only	5	5	12	0.534296	2.845351	chr12	109878724	109878876	LINE|L2|L2b	-	chr12	109852544	109880325	GLTP|ENST00000540772.1	-	109852544,109855618,109857525,109858682,109880271	109852737,109855738,109857659,109858741,109880325	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr9	39809803	39809859	39809858	-	High_confidence	13	23	61	2.716005	4.618313	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803589	39810063	STRG.55253.3	-	39803589,39809485	39803859,39810063	0.967213
esophagus_squamous_epithelium_male_adult_54_years	chr3	129439755	129439764	129439755	-	High_confidence	2	2	7	0.311673	2.584963	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129431265	129440007	MBD4|ENST00000503197.5	-	129431265,129432555,129433097,129433849,129434061,129436442,129437719,129439729	129431578,129432606,129433247,129433984,129434136,129437308,129437950,129440007	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr11	65440658	65440888	65440781	+	RAMPAGE_only	44	44	511	22.752108	6.199427	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65425550	65445540	STRG.65573.5	+	65425550,65437252	65437175,65445540	0.992172
esophagus_squamous_epithelium_male_adult_54_years	chr11	73217566	73217578	73217577	+	High_confidence	5	5	12	0.534296	3.277613	chr11	73217526	73217658	LINE|L2|L2b	-	chr11	73218297	73235932	P2RY2|ENST00000393597.6	+	73218297,73227980,73234155	73218432,73228175,73235932	0.833333
esophagus_squamous_epithelium_male_adult_54_years	chr17	41871799	41871820	41871799	-	RAMPAGE_only	3	3	8	0.356197	2.807355	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr3	9987152	9987174	9987162	+	High_confidence	7	7	23	1.024068	4.095795	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986934	10007087	STRG.19286.1	+	9986934,9998775	9988747,10007087	0.956522
esophagus_squamous_epithelium_male_adult_54_years	chr4	76234500	76234527	76234500	-	High_confidence	7	7	37	1.647413	4.672140	chr4	76234334	76234657	LTR|ERV1|MER61A	-	chr4	76158759	76234536	SCARB2|ENST00000638295.1	-	76158759,76163224,76166249,76168402,76169866,76174143,76175790,76176436,76179516,76180953,76195706,76234302	76161751,76163383,76166301,76168476,76169985,76174313,76175910,76176528,76179705,76181101,76195864,76234536	0.567568
esophagus_squamous_epithelium_male_adult_54_years	chr1	150729830	150729866	150729830	-	High_confidence	11	11	34	1.513839	4.748940	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150646224	150729971	STRG.5591.1	-	150646224,150661813,150663631,150694655,150696991,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150714614,150717137,150719472,150729141,150729573	150648748,150661928,150663763,150694850,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150714678,150717282,150719538,150729225,150729971	0.911765
esophagus_squamous_epithelium_male_adult_54_years	chr13	29647337	29647361	29647360	+	High_confidence	8	8	26	1.157642	4.209867	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647382	29655379	STRG.73265.1	+	29647382,29655069	29647724,29655379	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr3	169447772	169447794	169447789	+	High_confidence	19	20	93	4.140795	5.566600	chr3	169447527	169447947	LINE|L2|L2c	-	chr3	169447866	169477052	LOC105374205|NR_134932.1	+	169447866,169463943,169467033,169470144,169476885	169447935,169464122,169467100,169470197,169477052	0.655914
esophagus_squamous_epithelium_male_adult_54_years	chr4	48546117	48546140	48546117	-	High_confidence	2	2	8	0.356197	2.807355	chr4	48546053	48546089	LINE|CR1|X7C_LINE	-	chr4	48521093	48546759	FRYL|ENST00000513401.5	-	48521093,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066	48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546759	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr3	14018388	14018400	14018388	+	High_confidence	7	7	15	0.667870	3.773557	chr3	14018426	14018640	SINE|MIR|MIRb	+	chr3	14017400	14064212	STRG.19406.2	+	14017400,14028275,14063378,14064019	14019739,14028384,14063508,14064212	0.600000
esophagus_squamous_epithelium_male_adult_54_years	chr2	174410019	174410067	174410066	+	High_confidence	2	2	9	0.400722	3.169925	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410081	174427895	SCRN3|ENST00000549848.5	+	174410081,174422884,174424474,174427712	174410503,174423047,174424649,174427895	0.555556
esophagus_squamous_epithelium_male_adult_54_years	chr5	148090566	148090567	148090566	+	High_confidence	6	6	7	0.311673	2.584963	chr5	148090525	148090646	SINE|MIR|MIRc	+	chr5	148090652	148098003	SPINK5|ENST00000481286.5	+	148090652,148091164,148094353,148095817,148097866	148090700,148091228,148094481,148095905,148098003	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr7	73223405	73223408	73223407	+	RAMPAGE_only	4	7	10	0.445247	3.121928	chr7	73223371	73223622	SINE|Alu|AluJo	-	chr7	73220645	73235787	NCF1B|ENST00000435988.1	+	73220645,73223878,73225710,73225878,73227409,73229580,73230142,73231809,73234590,73235168,73235661	73220720,73223956,73225785,73226052,73227478,73229691,73230268,73231929,73234719,73235339,73235787	0.900000
esophagus_squamous_epithelium_male_adult_54_years	chr16	4355592	4355593	4355592	-	High_confidence	41	41	41	1.825512	3.981787	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.951220
esophagus_squamous_epithelium_male_adult_54_years	chr12	10553364	10553365	10553364	+	High_confidence	24	25	31	1.380265	4.631616	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.774194
esophagus_squamous_epithelium_male_adult_54_years	chr11	65431421	65431499	65431469	+	RAMPAGE_only	24	24	112	4.986763	5.952644	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65425550	65445540	STRG.65573.5	+	65425550,65437252	65437175,65445540	0.973214
esophagus_squamous_epithelium_male_adult_54_years	chr6	36540105	36540206	36540205	-	RAMPAGE_only	3	4	29	1.291216	4.789015	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36547462	STRG.38603.2	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540204,36547462	0.965517
esophagus_squamous_epithelium_male_adult_54_years	chr4	81154143	81154202	81154156	-	High_confidence	5	6	43	1.914561	5.011365	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81087369	81154157	PRKG2|NM_001282480.1	-	81087369,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153429,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153555,81153721,81154157	0.953488
esophagus_squamous_epithelium_male_adult_54_years	chr13	27445105	27445110	27445105	-	RAMPAGE_only	2	3	7	0.311673	2.584963	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr16	63618044	63618046	63618045	-	High_confidence	90	137	159	7.079423	6.345514	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63301940	63618046	STRG.83532.3	-	63301940,63334599,63531224,63617692	63305420,63334667,63531304,63618046	0.641509
esophagus_squamous_epithelium_male_adult_54_years	chr15	41947009	41947010	41947009	-	RAMPAGE_only	5	6	8	0.356197	2.521641	chr15	41946924	41947161	SINE|MIR|MIR	-	chr15	41899439	41972557	EHD4|NM_139265.3	-	41899439,41909698,41919209,41943066,41953763,41972258	41901181,41909863,41919622,41943164,41953940,41972557	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr9	72295108	72295109	72295108	+	RAMPAGE_only	29	29	29	1.291216	2.939059	chr9	72295156	72295467	SINE|Alu|AluJb	+	chr9	73151730	73170393	ANXA1|NM_000700.2	+	73151730,73158521,73158694,73159328,73160262,73160802,73162781,73163475,73165115,73166096,73167496,73169031,73170050	73151924,73158601,73158803,73159423,73160376,73160893,73162861,73163532,73165209,73166192,73167555,73169154,73170393	0.965517
esophagus_squamous_epithelium_male_adult_54_years	chr5	55378147	55378148	55378147	+	RAMPAGE_only	46	49	58	2.582431	5.280395	chr5	55377896	55378193	LTR|ERVL|MER21A	+	chr5	55308000	55425106	MTREX|ENST00000506750.5	+	55308000,55327715,55328698,55340009,55341680,55343330,55344521,55345093,55347012,55349572,55350918,55353167,55358572,55366724,55378313,55379126,55387973,55397415,55400232,55405424,55410523,55414181,55415969,55422877,55424719	55308147,55327778,55328811,55340184,55341771,55343455,55344620,55345196,55347144,55349652,55351029,55353269,55358698,55366875,55378486,55379195,55388102,55397526,55400421,55405588,55410629,55414238,55416132,55422982,55425106	0.810345
esophagus_squamous_epithelium_male_adult_54_years	chr4	152627504	152627526	152627504	-	RAMPAGE_only	7	7	19	0.845969	3.614369	chr4	152627498	152627643	DNA|hAT-Charlie|MER117	+	chr4	152622287	152680012	STRG.30597.2	-	152622287,152640927,152643087,152644414,152652666,152679820	152628561,152640985,152643173,152652576,152652927,152680012	0.947368
esophagus_squamous_epithelium_male_adult_54_years	chr8	75324606	75324636	75324625	-	High_confidence	4	4	19	0.845969	3.794653	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223702	75324741	CASC9|ENST00000522183.1	-	75223702,75324564	75224358,75324741	0.631579
esophagus_squamous_epithelium_male_adult_54_years	chr11	65433906	65434800	65434799	+	RAMPAGE_only	97	97	1703	75.825520	7.491930	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65425550	65445540	STRG.65573.5	+	65425550,65437252	65437175,65445540	0.997064
esophagus_squamous_epithelium_male_adult_54_years	chr16	83803800	83803830	83803829	-	High_confidence	5	5	9	0.400722	2.750000	chr16	83803565	83803892	DNA|hAT-Charlie|MER113	-	chr16	83789966	83803918	STRG.84429.1	-	83789966,83803434,83803668	83790204,83803528,83803918	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr14	101731413	101731433	101731413	+	High_confidence	8	8	18	0.801444	3.852169	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.833333
esophagus_squamous_epithelium_male_adult_54_years	chr12	46367672	46367683	46367675	-	High_confidence	4	6	13	0.578821	3.084963	chr12	46367602	46367794	SINE|MIR|MIRc	+	chr12	46364441	46367410	SLC38A2|ENST00000548870.5	-	46364441,46364643,46365106,46366863,46367075,46367266	46364556,46364702,46365189,46366945,46367168,46367410	0.615385
esophagus_squamous_epithelium_male_adult_54_years	chr17	41996312	41996324	41996323	-	RAMPAGE_only	4	5	10	0.445247	2.947703	chr17	41996098	41996284	SINE|MIR|MIRc	-	chr17	41981983	41988873	DNAJC7|ENST00000586335.1	-	41981983,41982254,41983562,41987594,41987818,41988731	41982007,41982401,41983636,41987694,41987910,41988873	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr1	32816889	32816930	32816906	+	High_confidence	10	10	23	1.024068	4.297079	chr1	32816717	32816919	LINE|L2|L2c	+	chr1	32816766	32826489	S100PBP|ENST00000530710.5	+	32816766,32825312,32826097	32816982,32825429,32826489	0.695652
esophagus_squamous_epithelium_male_adult_54_years	chr6	132687359	132687378	132687374	-	High_confidence	14	16	41	1.825512	4.405856	chr6	132687157	132687546	LINE|L1|HAL1	+	chr6	132681596	132687394	STRG.42027.2	-	132681596,132684334,132686598	132683322,132684505,132687394	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr6	79631256	79631329	79631302	+	High_confidence	133	133	604	26.892903	6.628258	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.976821
esophagus_squamous_epithelium_male_adult_54_years	chr8	39083065	39083066	39083065	+	RAMPAGE_only	13	15	17	0.756919	3.327820	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.823529
esophagus_squamous_epithelium_male_adult_54_years	chr6	13794181	13794242	13794241	-	RAMPAGE_only	99	99	167	7.435621	4.111730	chr6	13794117	13794268	SINE|Alu|FLAM_C	-	chr6	13787133	13801345	MCUR1|ENST00000607303.1	-	13787133,13788645,13791877,13793893,13798832,13800340,13801287	13787355,13788704,13791992,13793947,13798904,13800382,13801345	0.958084
esophagus_squamous_epithelium_male_adult_54_years	chr11	57822979	57823022	57822994	+	RAMPAGE_only	8	9	36	1.602888	4.281754	chr11	57823039	57823835	LINE|L1|L1MEd	+	chr11	57810144	57844406	STRG.65201.30	+	57810144,57811398,57814310,57815393,57816296,57837780	57810223,57811486,57814373,57815500,57837527,57844406	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr6	33263775	33263791	33263775	-	RAMPAGE_only	1	1	7	0.311673	2.584963	chr6	33263613	33263730	LINE|L2|L2b	-	chr6	33250271	33271876	VPS52|ENST00000482399.5	-	33250271,33251517,33251859,33263483,33263771,33264007,33264373,33264781,33266556,33267187,33267681,33267864,33268107,33268498,33269013,33269489,33269743,33270198,33271136	33250987,33251636,33251971,33263549,33263879,33264103,33264497,33264900,33266712,33267321,33267739,33267997,33268208,33268649,33269189,33269557,33269819,33270283,33271876	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr3	69237171	69237186	69237182	-	RAMPAGE_only	27	28	118	5.253912	6.158588	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.508475
esophagus_squamous_epithelium_male_adult_54_years	chr17	17686054	17686059	17686056	+	RAMPAGE_only	11	20	31	1.380265	4.094740	chr17	17685599	17686175	LINE|L2|L2b	+	chr17	17682494	17793143	RAI1|ENST00000471135.2	+	17682494,17683545,17724027,17792932	17682563,17683703,17724159,17793143	0.935484
esophagus_squamous_epithelium_male_adult_54_years	chr10	102449836	102449839	102449838	+	High_confidence	9	16	17	0.756919	3.625000	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449841	102456292	STRG.62417.3	+	102449841,102455336	102450330,102456292	0.941176
esophagus_squamous_epithelium_male_adult_54_years	chr15	82749702	82749703	82749702	+	High_confidence	12	13	15	0.667870	3.456565	chr15	82749521	82749958	LTR|ERVL-MaLR|MLT1C	+	chr15	82749684	82750377	STRG.81245.1	+	82749684	82750377	0.933333
esophagus_squamous_epithelium_male_adult_54_years	chr9	92077199	92077226	92077199	-	RAMPAGE_only	14	14	46	2.048135	4.821614	chr9	92072526	92078223	LTR|ERV1|HERVH-int	+	chr9	92000941	92080076	SPTLC1|ENST00000642671.1	-	92000941,92028639,92029249,92034809,92038247,92045998,92046274,92047171,92047612,92049959,92050295,92055404,92059178,92067965,92070123,92076797,92080015	92001406,92028737,92029346,92034883,92038365,92046053,92046334,92047268,92047708,92050067,92050491,92055494,92059308,92068098,92070296,92077035,92080076	0.826087
esophagus_squamous_epithelium_male_adult_54_years	chr7	48105009	48105072	48105009	+	High_confidence	5	5	30	1.335740	4.031402	chr7	48104893	48105542	LINE|L1|L1M8	+	chr7	48104645	48108415	UPP1|ENST00000495446.1	+	48104645,48107360,48108217	48107082,48107507,48108415	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr15	41278792	41278887	41278886	+	RAMPAGE_only	10	10	41	1.825512	4.531349	chr15	41278930	41279226	SINE|Alu|AluSg	+	chr15	41231238	41281887	CHP1|NM_007236.4	+	41231238,41243666,41256909,41262755,41270556,41278766,41279335	41231449,41243739,41256990,41262883,41270618,41278889,41281887	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr7	150322649	150322657	150322649	+	High_confidence	3	3	9	0.400722	3.000000	chr7	150322211	150322830	LTR|ERV1|MER41B	+	chr7	150322638	150325919	LRRC61|ENST00000471872.1	+	150322638,150325840	150323212,150325919	0.777778
esophagus_squamous_epithelium_male_adult_54_years	chrX	147937518	147937560	147937542	+	RAMPAGE_only	3	4	10	0.445247	2.947703	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.102797.8	+	147940580,147944868,147945533,147948682	147943326,147945051,147945616,147950315	0.900000
esophagus_squamous_epithelium_male_adult_54_years	chr6	106859288	106859291	106859290	+	High_confidence	64	107	146	6.500602	5.816155	chr6	106859148	106859547	LTR|ERVL-MaLR|MLT1C	+	chr6	106859258	106863836	STRG.40941.1	+	106859258,106860116	106859984,106863836	0.863014
esophagus_squamous_epithelium_male_adult_54_years	chr16	11587468	11587475	11587468	-	High_confidence	6	6	13	0.578821	2.855389	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.769231
esophagus_squamous_epithelium_male_adult_54_years	chr11	65439264	65439361	65439297	+	RAMPAGE_only	15	15	121	5.387486	6.075437	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65425550	65445540	STRG.65573.5	+	65425550,65437252	65437175,65445540	0.991736
esophagus_squamous_epithelium_male_adult_54_years	chr1	51331257	51331303	51331284	-	High_confidence	3	3	10	0.445247	3.169925	chr1	51331085	51331234	SINE|MIR|MIRc	-	chr1	51297217	51331346	TTC39A|ENST00000262676.9	-	51297217,51302505,51303083,51305080,51305976,51309260,51311253,51312118,51312811,51321720,51331153	51302416,51302573,51303192,51305146,51306076,51309430,51311321,51312195,51312943,51321825,51331346	0.900000
esophagus_squamous_epithelium_male_adult_54_years	chr12	121993138	121993149	121993142	+	High_confidence	3	4	12	0.534296	2.845351	chr12	121993005	121993967	Retroposon|SVA|SVA_F	+	chr12	121992590	122003927	STRG.72790.1	+	121992590,121999715,122001496,122003651	121993672,121999944,122001598,122003927	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr21	43784886	43784887	43784886	+	High_confidence	68	68	80	3.561974	4.502079	chr21	43784678	43785086	LTR|ERVL|MLT2A1	+	chr21	43785032	43787855	STRG.97147.1	+	43785032,43785176	43785086,43787855	0.537500
esophagus_squamous_epithelium_male_adult_54_years	chr10	103746763	103746809	103746765	+	High_confidence	38	62	252	11.220218	6.863298	chr10	103746609	103747070	LINE|L2|L2b	+	chr10	103746778	103755409	SH3PXD2A-AS1|NR_038940.1	+	103746778,103749781,103753843	103747096,103749920,103755409	0.801587
esophagus_squamous_epithelium_male_adult_54_years	chr5	53036220	53036245	53036244	-	High_confidence	2	3	7	0.311673	2.584963	chr5	53036079	53036820	LINE|L2|L2a	+	chr5	53026393	53036198	STRG.32542.1	-	53026393,53035637,53036151	53026480,53035773,53036198	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr5	133064420	133064455	133064444	+	RAMPAGE_only	48	48	207	9.216608	5.449101	chr5	133064223	133064516	SINE|Alu|AluSx	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.913043
esophagus_squamous_epithelium_male_adult_54_years	chr8	26395611	26395612	26395611	+	High_confidence	114	136	164	7.302047	4.716507	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.792683
esophagus_squamous_epithelium_male_adult_54_years	chr11	58578078	58578103	58578102	-	High_confidence	5	5	9	0.400722	2.750000	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.777778
esophagus_squamous_epithelium_male_adult_54_years	chr9	92077991	92078008	92078007	-	RAMPAGE_only	9	13	28	1.246691	4.392747	chr9	92072526	92078223	LTR|ERV1|HERVH-int	+	chr9	92028457	92080076	SPTLC1|ENST00000646481.1	-	92028457,92029179,92034809,92038247,92045998,92046274,92047171,92047612,92049959,92055404,92059178,92067965,92076797,92080015	92028757,92029346,92034883,92038365,92046053,92046334,92047268,92047708,92050067,92055494,92059308,92068098,92077035,92080076	0.785714
esophagus_squamous_epithelium_male_adult_54_years	chr2	241098858	241098894	241098858	-	RAMPAGE_only	8	8	21	0.935018	3.880180	chr2	241098792	241098897	LINE|L2|L2a	-	chr2	241091044	241100610	STRG.18616.10	-	241091044,241098805	241097427,241100610	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr7	6054548	6054573	6054548	-	RAMPAGE_only	3	3	11	0.489771	2.921928	chr7	6054207	6054503	SINE|Alu|AluSx1	-	chr7	6024355	6059175	STRG.43823.2	-	6024355,6026727,6028614,6028917,6037423,6038559,6040891,6042932,6044561,6046070,6046991,6048806,6049911,6054545,6058965	6024801,6026961,6028697,6029032,6037524,6038671,6041219,6042990,6044661,6046151,6047091,6048844,6050045,6054704,6059175	0.727273
esophagus_squamous_epithelium_male_adult_54_years	chr9	129488817	129488857	129488856	+	High_confidence	9	10	22	0.979543	3.617810	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.954545
esophagus_squamous_epithelium_male_adult_54_years	chr18	9588111	9588121	9588111	-	RAMPAGE_only	3	3	15	0.667870	3.506891	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9561982	9595061	STRG.88386.4	-	9561982,9563377,9570156,9583116,9584514,9584720,9588088,9588710,9593767,9595017	9562075,9563550,9577191,9583275,9584580,9584828,9588235,9588853,9593874,9595061	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr19	46927466	46927467	46927466	+	RAMPAGE_only	112	112	134	5.966306	4.548998	chr19	46927388	46927549	LINE|L2|L2b	-	chr19	46918675	47005077	ARHGAP35|ENST00000404338.7	+	46918675,46937263,46987988,46989543,46999303,47000330	46922356,46937408,46988066,46989675,46999409,47005077	0.932836
esophagus_squamous_epithelium_male_adult_54_years	chr3	153980111	153980204	153980138	-	High_confidence	11	21	76	3.383875	5.575225	chr3	153979573	153983404	LINE|L1|L1PB1	+	chr3	153881254	153980130	STRG.24203.2	-	153881254,153937507,153940791,153943185,153979853	153927317,153937670,153942075,153943268,153980130	0.578947
esophagus_squamous_epithelium_male_adult_54_years	chr5	85647822	85647823	85647822	-	High_confidence	12	13	14	0.623345	3.467720	chr5	85647706	85648160	LTR|ERV1|LTR71A	-	chr5	85635039	85647805	STRG.33636.1	-	85635039,85647484	85635252,85647805	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr11	67121043	67121059	67121054	+	High_confidence	9	12	35	1.558364	4.476064	chr11	67120903	67121062	SINE|tRNA|LFSINE_Vert	-	chr11	67121268	67255062	KDM2A|ENST00000308783.9	+	67121268,67131951,67180078,67181319,67181845,67207509,67215339,67215855,67217730,67219287,67228036,67231565,67243008,67245188,67245984,67248280,67250085,67252693,67253452,67254202,67254873	67121358,67132073,67180217,67181398,67181892,67207688,67215446,67215949,67217884,67219403,67228163,67231960,67243092,67245458,67246116,67248370,67250798,67252857,67253611,67254418,67255062	0.800000
esophagus_squamous_epithelium_male_adult_54_years	chr12	8681673	8681677	8681676	+	High_confidence	27	27	42	1.870036	5.171928	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.690476
esophagus_squamous_epithelium_male_adult_54_years	chr8	86515466	86515483	86515466	+	High_confidence	1	2	7	0.311673	2.584963	chr8	86515376	86515543	SINE|MIR|MIRb	-	chr8	86514503	86532580	CPNE3|ENST00000523469.5	+	86514503,86515461,86521603,86528535,86528944,86531154,86532508	86514541,86515499,86521714,86528677,86529124,86531229,86532580	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr12	8681598	8681600	8681599	+	High_confidence	11	15	21	0.935018	3.921928	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.761905
esophagus_squamous_epithelium_male_adult_54_years	chr7	114901886	114901910	114901909	-	High_confidence	8	8	24	1.068592	4.459432	chr7	114901652	114902199	LTR|ERVL|MLT2A2	-	chr7	114897415	114901976	STRG.48053.1	-	114897415	114901976	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr19	15828997	15829028	15829013	+	High_confidence	4	4	17	0.756919	3.750000	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829050	15835417	UCA1|ENST00000644845.1	+	15829050,15831254,15834635,15835217	15829338,15831356,15835114,15835417	0.764706
esophagus_squamous_epithelium_male_adult_54_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	44	44	45	2.003610	4.149233	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	0.977778
esophagus_squamous_epithelium_male_adult_54_years	chr19	50972930	50972999	50972930	+	High_confidence	3	3	20	0.890493	4.021928	chr19	50972807	50973150	LINE|L2|L2b	+	chr19	50972959	50991282	STRG.93009.1	+	50972959,50973180,50987455,50990948	50973060,50973333,50987565,50991282	0.600000
esophagus_squamous_epithelium_male_adult_54_years	chr1	176162936	176162963	176162936	-	RAMPAGE_only	6	6	14	0.623345	3.700440	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	68	69	75	3.339351	5.628558	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.800000
esophagus_squamous_epithelium_male_adult_54_years	chr7	5514013	5514014	5514013	-	High_confidence	7	7	9	0.400722	2.725481	chr7	5513926	5514323	LINE|L2|L2a	+	chr7	5475796	5513798	FBXL18|NM_024963.5	-	5475796,5491230,5500487,5505411,5513656	5481931,5491449,5502031,5505630,5513798	0.888889
esophagus_squamous_epithelium_male_adult_54_years	chr19	35115804	35115862	35115834	+	High_confidence	19	19	64	2.849579	5.205087	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_021910.2	+	35115827,35116263,35119167,35119362,35121077,35121221,35122764,35123270,35123440	35115959,35116359,35119251,35119416,35121110,35121245,35122954,35123308,35124324	0.906250
esophagus_squamous_epithelium_male_adult_54_years	chr6	76877074	76877075	76877074	-	High_confidence	4	4	7	0.311673	2.584963	chr6	76875759	76877075	LINE|L1|L1HS	-	chr6	76876161	76877144	STRG.39934.1	-	76876161	76877144	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr19	9140390	9140428	9140393	+	High_confidence	22	22	112	4.986763	5.966367	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.633929
esophagus_squamous_epithelium_male_adult_54_years	chr16	83808571	83808575	83808571	+	High_confidence	5	7	12	0.534296	2.855389	chr16	83808490	83808599	SINE|MIR|MIR3	-	chr16	83808061	83811503	HSBP1|ENST00000567382.1	+	83808061,83809304,83811420	83808746,83809425,83811503	0.916667
esophagus_squamous_epithelium_male_adult_54_years	chr1	20775846	20775887	20775886	-	RAMPAGE_only	3	5	9	0.400722	2.725481	chr1	20775005	20775936	DNA|TcMar-Tigger|Tigger3b	+	chr1	20775449	20780541	HP1BP3|ENST00000487117.1	-	20775449,20779811,20780344	20776750,20779911,20780541	0.777778
esophagus_squamous_epithelium_male_adult_54_years	chr17	60887052	60887071	60887064	+	High_confidence	5	5	31	1.380265	4.651084	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.935484
esophagus_squamous_epithelium_male_adult_54_years	chr6	132731769	132731770	132731769	-	RAMPAGE_only	12	12	13	0.578821	3.418296	chr6	132731663	132731956	SINE|Alu|AluSx	-	chr6	132720905	132734692	STRG.42027.12	-	132720905,132724605,132726721,132734479	132723907,132724979,132734383,132734692	0.923077
esophagus_squamous_epithelium_male_adult_54_years	chr17	6853886	6853950	6853928	+	High_confidence	12	12	74	3.294826	5.741127	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6895102	ALOX12P2|ENST00000576636.6	+	6853929,6854213,6892002,6894883,6895095	6854060,6854453,6892075,6895006,6895102	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr17	51153852	51153875	51153852	+	High_confidence	4	4	22	0.979543	4.297079	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51153664	51161898	NME1|ENST00000013034.3	+	51153664,51154224,51155650,51159979,51161159,51161727	51153724,51154444,51155780,51160081,51161272,51161898	0.727273
esophagus_squamous_epithelium_male_adult_54_years	chr16	27330079	27330102	27330101	+	RAMPAGE_only	2	3	8	0.356197	2.521641	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27340203	27355876	STRG.82835.5	+	27340203,27342120,27344868,27346466,27352539,27355807	27340273,27342259,27345020,27346618,27352696,27355876	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr17	8288359	8288380	8288359	+	High_confidence	5	5	14	0.623345	3.093069	chr17	8288152	8288433	SINE|Alu|AluJb	+	chr17	8288496	8290092	RANGRF|ENST00000226105.10	+	8288496,8288955,8289257,8289502,8289812	8288865,8289072,8289414,8289588,8290092	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr14	81170392	81170414	81170402	-	High_confidence	5	6	25	1.113117	4.001629	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.920000
esophagus_squamous_epithelium_male_adult_54_years	chr8	144853502	144853556	144853555	-	High_confidence	3	3	17	0.756919	3.969816	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr18	976771	976772	976771	+	High_confidence	12	12	16	0.712395	3.373557	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976589	1174804	AP005328.1|ENST00000580781.5	+	976589,1133842,1159178,1162814,1174645	976895,1133894,1159398,1162853,1174804	0.625000
esophagus_squamous_epithelium_male_adult_54_years	chr5	149628372	149628373	149628372	+	RAMPAGE_only	6	6	8	0.356197	2.807355	chr5	149628389	149628643	LINE|CR1|L3	+	chr5	149588902	149634968	STRG.36292.4	+	149588902,149597758,149601107,149609547,149616566,149618175,149618937,149621732,149624011,149627075,149628808,149631981	149589594,149597955,149601231,149609695,149616766,149618306,149620464,149622062,149624140,149627271,149628966,149634968	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr3	14526209	14526245	14526244	-	High_confidence	10	10	37	1.647413	4.982289	chr3	14526136	14526359	SINE|MIR|MIRc	-	chr3	14516175	14526302	STRG.19489.1	-	14516175,14517771,14520109,14520389,14521641,14522999,14523611,14524392,14525436,14525850	14517213,14517897,14520279,14520537,14521787,14523075,14523698,14524538,14525572,14526302	0.810811
esophagus_squamous_epithelium_male_adult_54_years	chr2	58116918	58116944	58116943	+	RAMPAGE_only	2	2	7	0.311673	2.521641	chr2	58115749	58118686	LTR|ERV1|HERVH-int	-	chr2	58120765	58159784	STRG.11585.7	+	58120765,58131807,58135140,58139665,58146315,58154758,58159348	58123233,58131928,58135199,58139832,58146474,58154802,58159784	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr19	46925771	46925824	46925771	+	RAMPAGE_only	4	6	23	1.024068	3.812061	chr19	46925682	46925823	SINE|MIR|MIR	+	chr19	46918675	47005077	ARHGAP35|ENST00000404338.7	+	46918675,46937263,46987988,46989543,46999303,47000330	46922356,46937408,46988066,46989675,46999409,47005077	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr2	177314856	177314917	177314916	-	High_confidence	30	41	160	7.123948	6.345502	chr2	177314867	177315028	DNA|hAT-Charlie|MER5A1	+	chr2	177231804	177314937	NFE2L2|ENST00000586532.5	-	177231804,177232391,177233249,177234004,177310963,177311232,177314916	177232008,177232583,177233339,177234271,177311035,177311328,177314937	0.543750
esophagus_squamous_epithelium_male_adult_54_years	chr4	42313844	42313853	42313844	+	High_confidence	32	34	53	2.359808	5.268758	chr4	42313410	42313975	LTR|ERV1|LTR10F	+	chr4	42313862	42323677	STRG.27329.1	+	42313862,42317866	42314221,42323677	0.811321
esophagus_squamous_epithelium_male_adult_54_years	chr7	141737460	141737469	141737468	+	High_confidence	6	6	15	0.667870	3.773557	chr7	141736645	141737590	DNA|TcMar-Tigger|Tigger3b	+	chr7	141738320	141750461	SSBP1|ENST00000265304.10	+	141738320,141739123,141742168,141743560,141743901,141745495,141750310	141738410,141739190,141742229,141743701,141743989,141745584,141750461	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr16	12117405	12117485	12117435	+	High_confidence	46	55	279	12.422384	6.350143	chr16	12117445	12117786	LINE|L1|L1MB5	+	chr16	12116721	12574289	STRG.82419.3	+	12116721,12117009,12126632,12129629,12199600,12277932,12356162,12398445,12403447,12477718,12524701,12568505	12116877,12117643,12126696,12129758,12199683,12278036,12356279,12398501,12403529,12477859,12524841,12574289	0.838710
esophagus_squamous_epithelium_male_adult_54_years	chr11	17282907	17282936	17282935	+	RAMPAGE_only	5	9	21	0.935018	4.021928	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr2	171433124	171433176	171433147	-	High_confidence	21	21	57	2.537906	5.265131	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.631579
esophagus_squamous_epithelium_male_adult_54_years	chr19	5847518	5847519	5847518	+	High_confidence	9	9	11	0.489771	3.321928	chr19	5847388	5847625	LTR|ERV1|LTR7B	+	chr19	5847466	5858239	AC024592.2|ENST00000589276.1	+	5847466,5852503,5854570,5857615	5847768,5852673,5854662,5858239	0.818182
esophagus_squamous_epithelium_male_adult_54_years	chr19	5680205	5680252	5680240	-	High_confidence	12	14	53	2.359808	5.036566	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.943396
esophagus_squamous_epithelium_male_adult_54_years	chrX	65921577	65921580	65921577	+	High_confidence	7	7	14	0.623345	3.334679	chrX	65919788	65921642	LINE|L1|L1PB1	-	chrX	65921599	65924207	STRG.100886.1	+	65921599	65924207	0.642857
esophagus_squamous_epithelium_male_adult_54_years	chr1	97904654	97904676	97904675	-	RAMPAGE_only	23	23	48	2.137184	5.202804	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.645833
esophagus_squamous_epithelium_male_adult_54_years	chr22	50785226	50785251	50785250	+	RAMPAGE_only	3	3	8	0.356197	2.521641	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr5	149628453	149628479	149628478	+	RAMPAGE_only	5	11	21	0.935018	3.784184	chr5	149628389	149628643	LINE|CR1|L3	+	chr5	149588902	149634968	STRG.36292.4	+	149588902,149597758,149601107,149609547,149616566,149618175,149618937,149621732,149624011,149627075,149628808,149631981	149589594,149597955,149601231,149609695,149616766,149618306,149620464,149622062,149624140,149627271,149628966,149634968	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr6	30984150	30984151	30984150	+	High_confidence	7	9	11	0.489771	3.321928	chr6	30984178	30984348	SINE|MIR|MIR	+	chr6	30983717	30988637	MUC21|ENST00000486149.2	+	30983717,30986236,30987999	30984161,30987681,30988637	0.909091
esophagus_squamous_epithelium_male_adult_54_years	chr19	54448601	54448602	54448601	+	High_confidence	6	6	6	0.267148	2.584963	chr19	54448651	54448966	SINE|Alu|AluSg	+	chr19	54448886	54462037	LENG8|ENST00000326764.9	+	54448886,54451289,54452092,54452650,54453545,54454429,54454950,54455363,54455966,54456324,54456635,54457746,54457933,54458102,54458313,54460765	54449310,54451382,54452267,54452752,54453656,54454682,54455092,54455567,54456245,54456465,54456921,54457848,54458002,54458232,54458521,54462037	0.833333
esophagus_squamous_epithelium_male_adult_54_years	chr8	75324289	75324332	75324331	-	High_confidence	54	57	207	9.216608	6.058750	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.801932
esophagus_squamous_epithelium_male_adult_54_years	chr19	49086520	49086547	49086546	+	High_confidence	14	14	36	1.602888	4.669925	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr19	44748076	44748093	44748076	+	High_confidence	13	13	25	1.113117	4.262692	chr19	44748054	44748176	SINE|MIR|MIRb	-	chr19	44747715	44759825	STRG.92668.1	+	44747715,44748652,44751226,44756231,44757016,44757326,44757645,44758245,44758723,44759427	44748391,44749046,44751380,44756340,44757221,44757415,44757723,44758413,44758841,44759825	0.920000
esophagus_squamous_epithelium_male_adult_54_years	chr1	174239180	174239181	174239180	+	High_confidence	4	5	7	0.311673	2.521641	chr1	174233266	174239293	LINE|L1|L1PA2	-	chr1	174238821	174244320	RABGAP1L|ENST00000529474.2	+	174238821,174241482,174242981,174244297	174238949,174241657,174243179,174244320	0.857143
esophagus_squamous_epithelium_male_adult_54_years	chr11	3477038	3477073	3477055	-	High_confidence	38	41	222	9.884478	5.498129	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3476010	3477083	STRG.63420.1	-	3476010,3476942	3476373,3477083	0.896396
esophagus_squamous_epithelium_male_adult_54_years	chr6	36540276	36540277	36540276	-	RAMPAGE_only	7	7	10	0.445247	3.169925	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36547462	STRG.38603.2	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540204,36547462	0.600000
esophagus_squamous_epithelium_male_adult_54_years	chr1	201361650	201361674	201361650	-	RAMPAGE_only	5	10	23	1.024068	3.422578	chr1	201361629	201361711	SINE|MIR|MIR3	-	chr1	201359007	201363350	TNNT2|ENST00000476888.5	-	201359007,201359622,201361278,201361950,201362385,201363295	201359255,201359663,201361369,201362022,201362394,201363350	0.913043
esophagus_squamous_epithelium_male_adult_54_years	chr2	222599975	222600036	222599990	-	RAMPAGE_only	3	3	17	0.756919	3.452820	chr2	222599989	222600062	LINE|RTE-BovB|MamRTE1	-	chr2	222570535	222656337	FARSB|ENST00000281828.6	-	222570535,222599927,222613810,222619644,222623649,222624271,222624713,222628836,222630112,222631603,222633198,222634390,222639579,222640861,222642850,222648739,222656015	222572022,222600083,222613928,222619737,222623730,222624479,222624775,222628888,222630174,222631674,222633307,222634541,222639695,222640931,222643005,222648795,222656337	0.941176
esophagus_squamous_epithelium_male_adult_54_years	chr19	36160819	36160852	36160819	-	High_confidence	2	4	12	0.534296	3.095795	chr19	36160591	36161023	LTR|ERV1|LTR7Y	-	chr19	36158230	36160781	STRG.91869.1	-	36158230,36160431	36158794,36160781	0.916667
esophagus_squamous_epithelium_male_adult_54_years	chr5	148310069	148310094	148310093	+	RAMPAGE_only	12	13	23	1.024068	3.762267	chr5	148310047	148310490	DNA|TcMar-Tigger|Tigger2a	+	chr5	148312422	148315922	SPINK7|ENST00000274565.4	+	148312422,148313373,148314099,148315638	148312544,148313399,148314224,148315922	0.956522
esophagus_squamous_epithelium_male_adult_54_years	chr13	109267764	109267770	109267769	-	High_confidence	3	4	8	0.356197	2.521641	chr13	109265521	109269052	LTR|ERV1|HERVH-int	+	chr13	109266622	109267538	STRG.74987.1	-	109266622	109267538	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chrX	45813239	45813288	45813287	-	RAMPAGE_only	5	5	16	0.712395	3.773557	chrX	45812881	45813425	LINE|L1|L1PA8	-	chrX	45799457	45848623	STRG.99906.10	-	45799457,45837007	45836624,45848623	0.937500
esophagus_squamous_epithelium_male_adult_54_years	chr15	29742857	29742882	29742857	-	High_confidence	2	2	6	0.267148	2.584963	chr15	29742819	29743037	LINE|L1|L1M5	+	chr15	29741021	29743029	TJP1|ENST00000485381.1	-	29741021,29742641	29741436,29743029	0.833333
esophagus_squamous_epithelium_male_adult_54_years	chr11	65439542	65439544	65439542	+	RAMPAGE_only	11	17	22	0.979543	4.243300	chr11	65439400	65439684	SINE|Alu|AluSz6	+	chr11	65425550	65445540	STRG.65573.5	+	65425550,65437252	65437175,65445540	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr8	129786074	129786107	129786099	-	High_confidence	2	2	12	0.534296	3.095795	chr8	129786052	129786345	SINE|Alu|AluSg7	+	chr8	129751707	129786638	STRG.53356.4	-	129751707,129752697,129760544,129762625,129776101,129777367,129786010	129752147,129752820,129760589,129765793,129776285,129777591,129786638	0.916667
esophagus_squamous_epithelium_male_adult_54_years	chr2	156254904	156254948	156254934	-	High_confidence	29	34	191	8.504213	6.317490	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156199707	156254950	STRG.15036.1	-	156199707,156252035	156205438,156254950	0.596859
esophagus_squamous_epithelium_male_adult_54_years	chr8	27977125	27977126	27977125	-	High_confidence	9	10	14	0.623345	3.521641	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977114	STRG.50385.3	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977114	0.785714
esophagus_squamous_epithelium_male_adult_54_years	chr7	76108523	76108529	76108523	-	RAMPAGE_only	3	3	9	0.400722	3.000000	chr7	76108474	76108547	SINE|Alu|AluYj4	+	chr7	76103745	76104377	STRG.46616.3	-	76103745	76104377	0.555556
esophagus_squamous_epithelium_male_adult_54_years	chr2	231072232	231072266	231072232	+	RAMPAGE_only	7	7	25	1.113117	4.403856	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.960000
esophagus_squamous_epithelium_male_adult_54_years	chr1	46280179	46280202	46280179	-	RAMPAGE_only	2	2	8	0.356197	2.521641	chr1	46280045	46280180	SINE|MIR|MIRb	-	chr1	46278400	46286112	LRRC41|ENST00000617760.4	-	46278400,46278906,46279181,46279491,46280191,46280395,46281124,46285361	46278905,46279084,46279257,46279614,46280290,46280560,46281385,46286112	0.500000
esophagus_squamous_epithelium_male_adult_54_years	chr6	273640	273641	273640	+	High_confidence	11	11	11	0.489771	3.459432	chr6	273580	273729	LINE|L1|L1MC5	-	chr6	273656	317374	STRG.37180.6	+	273656,304627,311879	274222,304661,317374	0.545455
esophagus_squamous_epithelium_male_adult_54_years	chr14	103848782	103848814	103848813	-	High_confidence	12	16	62	2.760530	5.500138	chr14	103848808	103849048	SINE|MIR|MIRb	+	chr14	103733752	103848792	STRG.78513.3	-	103733752,103736002,103737693,103738678,103738885,103739823,103741789,103742653,103746372,103749793,103752999,103754069,103754942,103778744,103784794,103797370,103848271	103735195,103736202,103737860,103738812,103739023,103740593,103742291,103742823,103746553,103749934,103753196,103754438,103757751,103778821,103784914,103797518,103848792	0.774194
esophagus_squamous_epithelium_male_adult_54_years	chr14	102235451	102235481	102235480	-	High_confidence	8	10	36	1.602888	4.495907	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.972222
esophagus_squamous_epithelium_male_adult_54_years	chr10	69232557	69232586	69232585	+	RAMPAGE_only	4	4	20	0.890493	3.784184	chr10	69232519	69232745	SINE|MIR|MIRb	+	chr10	69220302	69267559	HKDC1|ENST00000354624.5	+	69220302,69227206,69232763,69233013,69239041,69240651,69243181,69246078,69247359,69248423,69250289,69250532,69257035,69257326,69258775,69261138,69265584,69266609	69220498,69227369,69232912,69233133,69239137,69240751,69243365,69246234,69247593,69248728,69250435,69250652,69257131,69257426,69258959,69261294,69265818,69267559	0.950000
esophagus_squamous_epithelium_male_adult_54_years	chr12	50763491	50763518	50763517	+	High_confidence	3	3	8	0.356197	2.521641	chr12	50763350	50763657	SINE|Alu|AluJo	+	chr12	50763709	50814192	ATF1|ENST00000552510.5	+	50763709,50780139,50795908,50809455,50814009	50763741,50780238,50796009,50809589,50814192	0.875000
esophagus_squamous_epithelium_male_adult_54_years	chr2	71024055	71024087	71024055	+	High_confidence	3	3	15	0.667870	3.664498	chr2	71020399	71024471	LTR|ERV1|HERVE-int	+	chr2	71024074	71029931	OR7E91P|NR_002185.3	+	71024074,71024305,71028915	71024200,71024394,71029931	0.933333
esophagus_squamous_epithelium_male_adult_54_years	chr6	3083275	3083298	3083297	+	RAMPAGE_only	4	4	8	0.356197	2.500000	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr6	28354137	28354206	28354205	-	High_confidence	39	42	120	5.342961	6.058453	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.508333
esophagus_squamous_epithelium_male_adult_54_years	chrX	152920330	152920383	152920368	+	High_confidence	7	7	36	1.602888	4.852169	chrX	152920417	152920551	SINE|MIR|MIR3	+	chrX	152920348	152973473	ZNF185|ENST00000426821.6	+	152920348,152920706,152922172,152931671,152932872,152938073,152945266,152959698,152963838,152965446,152967166,152969381,152970442,152971273	152920411,152920748,152922256,152931776,152932971,152938163,152945464,152959896,152963949,152965527,152967238,152969484,152970541,152973473	0.777778
esophagus_squamous_epithelium_male_adult_54_years	chr14	64453850	64453851	64453850	+	RAMPAGE_only	12	12	15	0.667870	3.093069	chr14	64453898	64454014	SINE|MIR|MIR3	+	chr14	64457996	64460003	MTHFD1|ENST00000554353.1	+	64457996,64459758	64458307,64460003	0.933333
esophagus_squamous_epithelium_male_adult_54_years	chr18	12554975	12554976	12554975	-	RAMPAGE_only	4	4	7	0.311673	2.521641	chr18	12554790	12555279	LTR|ERV1|LOR1a	+	chr18	12449505	12636340	SPIRE1|ENST00000440472.6	-	12449505,12452254,12453067,12454345,12463350,12464867,12479698,12493071,12496015,12506476,12512453,12535475,12546673,12588375,12635061,12636323	12449896,12452443,12453138,12454483,12463493,12464958,12479871,12493201,12496102,12506641,12512531,12535601,12546904,12588419,12635096,12636340	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr1	195722378	195722382	195722381	-	High_confidence	1032	1033	1567	69.770164	5.969310	chr1	195721970	195723453	LTR|ERV1|LTR12C	-	chr1	195679629	195722385	STRG.7448.3	-	195679629,195711140,195721819	195690765,195711710,195722385	0.949585
esophagus_squamous_epithelium_male_adult_54_years	chr11	17282810	17282822	17282810	+	RAMPAGE_only	12	12	27	1.202166	4.483856	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.851852
esophagus_squamous_epithelium_male_adult_54_years	chr12	68963244	68963269	68963244	-	High_confidence	6	6	19	0.845969	3.947703	chr12	68963127	68963528	LTR|ERV1|MER39B	+	chr12	68962505	68963128	STRG.70962.1	-	68962505	68963128	0.578947
esophagus_squamous_epithelium_male_adult_54_years	chr15	67166512	67166533	67166530	+	High_confidence	427	428	848	37.756924	5.396942	chr15	67166449	67166543	LINE|L2|L2b	-	chr15	67166530	67181420	SMAD3|ENST00000558428.5	+	67166530,67170553,67181240	67166853,67170604,67181420	0.931604
esophagus_squamous_epithelium_male_adult_54_years	chr11	76963478	76963479	76963478	-	RAMPAGE_only	22	23	32	1.424790	4.260333	chr11	76962900	76963486	LTR|ERV1|MER61F	+	chr11	76955416	76978619	AP002498.1|ENST00000530190.1	-	76955416,76958833,76978400	76955585,76959013,76978619	0.937500
esophagus_squamous_epithelium_male_adult_54_years	chr5	151268567	151268927	151268733	+	RAMPAGE_only	26	30	449	19.991579	4.285453	chr5	151268575	151268846	DNA|hAT-Charlie|MER102a	-	chr5	151253051	151270394	GM2A|NM_000405.4	+	151253051,151259754,151266730,151267295	151253297,151259916,151266913,151270394	0.995546
esophagus_squamous_epithelium_male_adult_54_years	chr21	33931142	33931167	33931146	+	High_confidence	5	5	20	0.890493	3.576618	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.800000
esophagus_squamous_epithelium_male_adult_54_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	52	52	52	2.315283	4.423891	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	0.980769
esophagus_squamous_epithelium_male_adult_54_years	chrX	152242028	152242029	152242028	-	RAMPAGE_only	9	9	12	0.534296	3.277613	chrX	152235997	152242028	LINE|L1|L1PA2	-	chrX	152168227	152389497	GABRA3|ENST00000535043.1	-	152168227,152189729,152197632,152208000,152224762,152255777,152284667,152345580,152364430,152389305	152168563,152189941,152197785,152208144,152224845,152255998,152284735,152345702,152364596,152389497	0.750000
esophagus_squamous_epithelium_male_adult_54_years	chr22	39021146	39021163	39021155	+	High_confidence	5	5	14	0.623345	3.392747	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.928571
esophagus_squamous_epithelium_male_adult_54_years	chr1	171251849	171251850	171251849	-	High_confidence	9	9	11	0.489771	3.121928	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171247579	171251794	AL445673.1|ENST00000455124.2	-	171247579,171251522	171247723,171251794	0.727273
esophagus_squamous_epithelium_male_adult_54_years	chr22	18149863	18149869	18149868	+	High_confidence	20	20	70	3.116727	5.247471	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.814286
esophagus_squamous_epithelium_male_adult_54_years	chr11	64242600	64242620	64242619	+	High_confidence	2	3	6	0.267148	2.584963	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr16	58123977	58123984	58123983	-	RAMPAGE_only	3	3	7	0.311673	2.584963	chr16	58123908	58124061	LINE|L2|L2b	-	chr16	58115400	58129361	CFAP20|ENST00000565880.1	-	58115400,58116040,58116871,58129031	58115450,58116152,58116951,58129361	0.714286
esophagus_squamous_epithelium_male_adult_54_years	chr15	89500551	89500566	89500551	+	RAMPAGE_only	2	2	9	0.400722	2.750000	chr15	89500583	89500641	SINE|MIR|MIRb	+	chr15	89505286	89506807	STRG.81448.1	+	89505286	89506807	0.777778
esophagus_squamous_epithelium_male_adult_54_years	chr9	39810023	39810099	39810033	-	High_confidence	42	42	99	4.407943	5.712741	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.525253
esophagus_squamous_epithelium_male_adult_54_years	chr4	189294694	189294734	189294694	-	High_confidence	4	4	21	0.935018	3.892407	chr4	189294395	189295326	LINE|L1|L1MB4	+	chr4	189294273	189294732	STRG.31541.1	-	189294273	189294732	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr1	47004217	47004239	47004238	+	High_confidence	4	5	17	0.756919	3.454822	chr1	47003946	47004346	LTR|ERV1|MER51B	+	chr1	47004239	47050754	CYP4X1|NM_001320290.1	+	47004239,47029989,47031435,47033240,47035805,47036016,47038659,47039341,47046466,47048564,47049421,47049999	47004369,47030131,47031480,47033368,47035933,47036171,47038766,47039532,47046600,47048629,47049504,47050754	0.941176
esophagus_squamous_epithelium_male_adult_54_years	chr1	6208681	6208682	6208681	-	High_confidence	130	130	130	5.788208	3.450301	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.992308
esophagus_squamous_epithelium_male_adult_54_years	chr9	21527734	21527855	21527734	-	RAMPAGE_only	5	5	46	2.048135	4.897081	chr9	21527666	21528918	LINE|L1|L1PA13	-	chr9	21454071	21537717	STRG.54521.1	-	21454071,21476898,21477125,21490898,21494693	21455944,21477035,21477292,21494602,21537717	0.934783
esophagus_squamous_epithelium_male_adult_54_years	chr1	89272783	89272784	89272783	-	High_confidence	4	4	7	0.311673	2.521641	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89262697	89272804	GBP5|ENST00000443807.1	-	89262697,89263735,89264685,89266345,89266956,89267416,89268728,89269365	89262785,89263948,89264966,89266588,89267153,89267526,89268856,89272804	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr11	65188723	65188741	65188740	+	RAMPAGE_only	3	3	8	0.356197	2.500000	chr11	65188757	65188907	SINE|MIR|MIRb	+	chr11	65182461	65211987	CAPN1|ENST00000527323.5	+	65182461,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65211987	1.000000
esophagus_squamous_epithelium_male_adult_54_years	chr6	40867661	40867733	40867729	-	High_confidence	91	105	290	12.912155	5.318755	chr6	40861829	40868245	LTR|ERV1|HERVH-int	-	chr6	40857516	40867712	STRG.38786.1	-	40857516,40861326,40867389	40858753,40861478,40867712	0.962069
esophagus_squamous_epithelium_male_adult_54_years	chr9	129698737	129698744	129698737	+	RAMPAGE_only	3	5	11	0.489771	2.646439	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	0.909091
esophagus_squamous_epithelium_male_adult_54_years	chr10	110817785	110817786	110817785	+	RAMPAGE_only	6	6	9	0.400722	3.000000	chr10	110817495	110817997	LINE|L2|L2c	-	chr10	110644396	110839469	RBM20|ENST00000369519.3	+	110644396,110780800,110783365,110784340,110784791,110797507,110799786,110810382,110812277,110820071,110821274,110823479,110831060,110835867	110644645,110781884,110783427,110784432,110784889,110797648,110799918,110810462,110812947,110820176,110821935,110823614,110831182,110839469	0.666667
esophagus_squamous_epithelium_male_adult_54_years	chr13	84086745	84086760	84086745	+	RAMPAGE_only	5	5	14	0.623345	3.026987	chr13	84085604	84086932	LTR|ERV1|LTR12C	-	chr13	84140601	84606768	LINC00333|NR_046871.1	+	84140601,84238539,84242062,84562363,84562608,84562791,84606705	84140643,84238600,84242097,84562463,84562676,84563234,84606768	0.714286
fibroblast_of_arm_male_adult_53_years	chr12	104280719	104280782	104280736	-	High_confidence	7	8	46	2.594356	4.363095	chr12	104280524	104280952	LTR|ERVL|MLT2D	+	chr12	104262313	104280722	AC089983.1|ENST00000549807.1	-	104262313,104280283	104262575,104280722	0.934783
fibroblast_of_arm_male_adult_53_years	chr21	36005131	36005171	36005170	+	High_confidence	6	9	23	1.297178	3.588354	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.956522
fibroblast_of_arm_male_adult_53_years	chr1	89272854	89272887	89272854	-	High_confidence	8	8	63	3.553140	4.347076	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.968254
fibroblast_of_arm_male_adult_53_years	chr1	200483498	200483503	200483500	-	High_confidence	14	20	37	2.086765	4.260067	chr1	200483479	200483655	DNA|hAT-Charlie|MER5B	+	chr1	200462754	200483604	MSTRG.2986.1	-	200462754,200478012,200483101	200465566,200478154,200483604	0.864865
fibroblast_of_arm_male_adult_53_years	chr5	142621153	142621229	142621153	-	High_confidence	11	11	28	1.579173	3.930270	chr5	142620934	142621256	LINE|L2|L2c	+	chr5	142592177	142621342	FGF1|ENST00000359370.10	-	142592177,142600701,142613958,142621296	142595484,142600805,142614161,142621342	0.964286
fibroblast_of_arm_male_adult_53_years	chr2	215843426	215843431	215843428	-	High_confidence	10	13	31	1.748371	4.030395	chr2	215842493	215843477	LINE|L2|L2a	+	chr2	215611562	215843536	LINC00607|ENST00000445174.5	-	215611562,215615276,215621117,215622685,215624111,215740876,215743813,215747303,215750242,215843325	215613738,215615634,215621350,215622761,215624235,215741021,215743914,215747394,215750417,215843536	0.645161
fibroblast_of_arm_male_adult_53_years	chr20	49239309	49239331	49239309	+	RAMPAGE_only	2	2	7	0.394793	2.521641	chr20	49239347	49239425	LINE|L1|L1MB4	+	chr20	49233837	49244077	DDX27|ENST00000471144.1	+	49233837,49238948,49239235,49241892,49242082,49242593,49243628	49236510,49239055,49239338,49241987,49242206,49242681,49244077	1.000000
fibroblast_of_arm_male_adult_53_years	chr2	200888569	200888588	200888569	-	High_confidence	3	3	9	0.507591	2.750000	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.555556
fibroblast_of_arm_male_adult_53_years	chr11	29160166	29160171	29160166	+	RAMPAGE_only	11	12	25	1.409976	3.593270	chr11	29159970	29160349	LTR|ERVL-MaLR|THE1D	+	chr11	29519075	29552639	AC110058.1|ENST00000530389.1	+	29519075,29552359	29519358,29552639	0.600000
fibroblast_of_arm_male_adult_53_years	chr4	102431237	102431249	102431247	-	High_confidence	14	20	61	3.440342	4.771437	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.852459
fibroblast_of_arm_male_adult_53_years	chr1	42959019	42959078	42959077	+	High_confidence	9	11	40	2.255962	3.215957	chr1	42959103	42959181	SINE|MIR|MIR3	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	1.000000
fibroblast_of_arm_male_adult_53_years	chr6	5498409	5498503	5498487	+	RAMPAGE_only	35	35	100	5.639905	4.713368	chr6	5498468	5498580	LINE|L2|L2b	+	chr6	5261525	5771580	FARS2|ENST00000274680.8	+	5261525,5368549,5404541,5431040,5545179,5613168,5771290	5261660,5369182,5404701,5431172,5545340,5613320,5771580	0.930000
fibroblast_of_arm_male_adult_53_years	chr18	39800293	39800314	39800313	-	High_confidence	10	11	38	2.143164	4.668980	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.500000
fibroblast_of_arm_male_adult_53_years	chr12	94996905	94996906	94996905	-	High_confidence	8	8	8	0.451192	2.750000	chr12	94996903	94997043	SINE|MIR|MIR3	+	chr12	94971331	94997447	NDUFA12|ENST00000550187.5	-	94971331,94994169,94997307	94971620,94994257,94997447	1.000000
fibroblast_of_arm_male_adult_53_years	chr6	75831675	75831680	75831675	+	RAMPAGE_only	20	20	48	2.707154	3.958428	chr6	75831621	75831911	SINE|Alu|AluJr	+	chr6	75817523	75915177	MYO6|ENST00000627432.2	+	75817523,75822781,75828539,75830415,75832841,75835900,75840584,75841213,75844896,75848350,75855138,75857096,75858901,75861022,75862595,75866525,75866931,75870646,75873206,75879819,75880042,75881688,75886003,75886843,75890056,75891227,75892529,75894813,75895230,75898372,75907604,75908495,75911671,75914062,75914812	75817664,75822851,75828613,75830545,75832947,75835956,75840682,75841378,75844977,75848531,75855283,75857254,75858993,75861095,75862723,75866621,75867105,75870685,75873300,75879950,75880120,75881818,75886094,75886994,75890265,75891306,75892690,75894840,75895260,75898411,75907708,75908627,75911698,75914281,75915177	0.937500
fibroblast_of_arm_male_adult_53_years	chr3	11225905	11225928	11225927	-	High_confidence	10	11	62	3.496741	5.208500	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.693548
fibroblast_of_arm_male_adult_53_years	chr2	29114149	29114174	29114149	+	High_confidence	5	5	14	0.789587	2.753434	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.714286
fibroblast_of_arm_male_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	1486	1753	2972	167.617978	4.922034	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.984859
fibroblast_of_arm_male_adult_53_years	chr5	179269465	179269466	179269465	-	RAMPAGE_only	14	17	21	1.184380	3.784184	chr5	179269301	179269658	LTR|ERVL-MaLR|THE1B	-	chr5	179110850	179345430	ADAMTS2|NM_014244.4	-	179110850,179121660,179122643,179124972,179125997,179127958,179129931,179132229,179132776,179135908,179137768,179139889,179152141,179153490,179154048,179154813,179158722,179181071,179207512,179272910,179343766,179345189	179114324,179121750,179122773,179125180,179126130,179128118,179130098,179132310,179132900,179136042,179137944,179140035,179152255,179153623,179154192,179154919,179158879,179181155,179207715,179273064,179344161,179345430	0.857143
fibroblast_of_arm_male_adult_53_years	chr4	81154201	81154222	81154201	-	High_confidence	5	5	17	0.958784	3.734522	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81087369	81154157	PRKG2|NM_001282480.1	-	81087369,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153429,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153555,81153721,81154157	0.882353
fibroblast_of_arm_male_adult_53_years	chr20	37298760	37298761	37298760	+	RAMPAGE_only	15	15	15	0.845986	3.240224	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
fibroblast_of_arm_male_adult_53_years	chr17	35268126	35268138	35268126	+	RAMPAGE_only	2	3	8	0.451192	2.500000	chr17	35267749	35268438	LINE|L1|HAL1b	+	chr17	35243088	35273655	MSTRG.15445.3	+	35243088,35258650,35260970,35264182	35243143,35259702,35261096,35273655	1.000000
fibroblast_of_arm_male_adult_53_years	chr22	39021129	39021163	39021146	+	High_confidence	4	4	23	1.297178	3.795089	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
fibroblast_of_arm_male_adult_53_years	chrX	115058000	115058001	115058000	-	RAMPAGE_only	7	7	7	0.394793	2.807355	chrX	115057876	115057975	LINE|CR1|L3b	-	chrX	114990888	115042514	MSTRG.38110.1	-	114990888,115005196,115007931,115009520,115010643,115013768,115014420,115015669,115017175,115017552,115019849,115042444	114991013,115005315,115008076,115009666,115010828,115013889,115014574,115015821,115017302,115017695,115019977,115042514	1.000000
fibroblast_of_arm_male_adult_53_years	chr13	24580612	24580623	24580622	+	High_confidence	8	9	21	1.184380	3.975418	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.904762
fibroblast_of_arm_male_adult_53_years	chr12	8788252	8788253	8788252	+	High_confidence	11	12	14	0.789587	3.378783	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.928571
fibroblast_of_arm_male_adult_53_years	chr2	202135838	202135854	202135838	+	High_confidence	15	17	26	1.466375	3.719295	chr2	202135840	202135976	SINE|MIR|MIRc	+	chr2	202135715	202197862	KIAA2012|ENST00000469462.1	+	202135715,202154672,202165283,202184752,202186932,202188151,202190173,202193300,202194189,202196799	202138508,202154810,202165356,202184843,202187098,202188266,202190493,202193503,202194362,202197862	0.961538
fibroblast_of_arm_male_adult_53_years	chr10	89285012	89285013	89285012	+	RAMPAGE_only	7	7	8	0.451192	2.521641	chr10	89284719	89285118	LTR|ERV1|LTR7	+	chr10	89283764	89292125	AL353751.1|ENST00000354541.7	+	89283764,89285035,89291986	89283891,89285264,89292125	0.750000
fibroblast_of_arm_male_adult_53_years	chr4	183349823	183349827	183349823	-	High_confidence	16	18	28	1.579173	3.503539	chr4	183349456	183350006	DNA|hAT-Tip100|Arthur1	+	chr4	183334116	183349819	MSTRG.28107.1	-	183334116,183334469,183349679	183334376,183334553,183349819	0.642857
fibroblast_of_arm_male_adult_53_years	chr21	36004583	36004626	36004583	+	High_confidence	8	8	34	1.917568	4.016687	chr21	36004527	36004641	LINE|L2|L2c	-	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.911765
fibroblast_of_arm_male_adult_53_years	chr11	58059955	58059965	58059964	-	High_confidence	4	4	10	0.563991	3.169925	chr11	58059905	58060126	LTR|ERVL|LTR33	+	chr11	58044109	58060138	AP004247.2|ENST00000526131.1	-	58044109,58047256,58057682,58059925	58045342,58047547,58057835,58060138	0.600000
fibroblast_of_arm_male_adult_53_years	chr2	87469947	87469950	87469947	+	High_confidence	7	7	17	0.958784	3.454822	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87469949	87521413	CYTOR|ENST00000437561.1	+	87469949,87470149,87521206	87470042,87470304,87521413	0.764706
fibroblast_of_arm_male_adult_53_years	chr1	245860512	245860536	245860512	-	High_confidence	16	16	25	1.409976	3.657268	chr1	245860451	245860544	DNA|hAT-Tip100|UCON132b	-	chr1	245749350	245860608	MSTRG.3582.6	-	245749350,245764040,245858495,245860442	245749664,245764149,245858701,245860608	0.920000
fibroblast_of_arm_male_adult_53_years	chr17	21551132	21551144	21551143	-	High_confidence	4	4	11	0.620390	2.721928	chr17	21551016	21551106	DNA|hAT-Charlie|Charlie16a	-	chr17	21528309	21551678	C17orf51|NM_001113434.4	-	21528309,21550995	21535538,21551678	0.909091
fibroblast_of_arm_male_adult_53_years	chr11	33706444	33706475	33706444	-	RAMPAGE_only	6	7	27	1.522774	3.093661	chr11	33706427	33706661	SINE|MIR|MIRb	-	chr11	33703009	33722727	CD59|NM_001127225.1	-	33703009,33717369,33722378,33722570	33710343,33717471,33722463,33722727	0.925926
fibroblast_of_arm_male_adult_53_years	chr14	100929920	100929921	100929920	+	High_confidence	8	9	9	0.507591	2.500000	chr14	100929864	100929989	LINE|L1|L1ME5	+	chr14	100929918	100947076	MSTRG.11453.64	+	100929918,100935771,100937402,100938879,100940364,100942761,100944808,100947033	100930509,100936310,100937488,100938956,100940450,100942838,100944925,100947076	0.555556
fibroblast_of_arm_male_adult_53_years	chr4	28373969	28373989	28373975	+	High_confidence	9	10	20	1.127981	4.021928	chr4	28373959	28374000	LINE|L2|L2a	+	chr4	28373963	28603470	MSTRG.26902.1	+	28373963,28476449,28577915,28600046	28374062,28476509,28577996,28603470	0.800000
fibroblast_of_arm_male_adult_53_years	chr15	34588448	34588451	34588450	-	High_confidence	10	20	22	1.240779	3.384184	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.772727
fibroblast_of_arm_male_adult_53_years	chr12	104030726	104030754	104030726	+	High_confidence	67	68	156	8.798252	6.189811	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.974359
fibroblast_of_arm_male_adult_53_years	chr11	14337104	14337171	14337125	-	High_confidence	4	5	34	1.917568	4.499228	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.676471
fibroblast_of_arm_male_adult_53_years	chr6	71603961	71603988	71603984	+	RAMPAGE_only	18	21	142	8.008665	5.288391	chr6	71603955	71604328	LINE|L1|L1MEc	-	chr6	71886702	72264004	RIMS1|ENST00000370419.6	+	71886702,71968982,72096948,72099974,72179574,72182283,72233772,72235617,72237822,72242313,72245814,72248014,72250329,72250920,72251214,72252760,72258124,72258985,72260704	71887187,71969063,72097162,72099986,72179915,72183149,72233840,72235728,72237922,72242437,72245861,72248127,72250460,72251092,72251368,72252832,72258281,72259111,72264004	0.619718
fibroblast_of_arm_male_adult_53_years	chr19	53865343	53865360	53865343	+	High_confidence	6	6	15	0.845986	3.640224	chr19	53865313	53865624	SINE|Alu|AluSx	-	chr19	53865583	53876435	MYADM|NM_001290193.1	+	53865583,53869753,53873527	53865728,53869838,53876435	0.733333
fibroblast_of_arm_male_adult_53_years	chr6	2881285	2881286	2881285	-	High_confidence	10	10	10	0.563991	2.846439	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
fibroblast_of_arm_male_adult_53_years	chr5	172954046	172954088	172954054	+	RAMPAGE_only	8	11	47	2.650755	4.624752	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172958728	172969716	RPL26L1|ENST00000519974.5	+	172958728,172959864,172968458,172969412	172958801,172960041,172968599,172969716	0.829787
fibroblast_of_arm_male_adult_53_years	chr1	32221722	32221771	32221770	+	High_confidence	13	13	37	2.086765	4.075016	chr1	32221596	32221823	SINE|MIR|MIRb	-	chr1	32221927	32226295	EIF3I|ENST00000355082.9	+	32221927,32222357,32222537,32224033,32224409,32226170	32222032,32222444,32222630,32224121,32224475,32226295	0.837838
fibroblast_of_arm_male_adult_53_years	chr11	34089397	34089456	34089438	+	High_confidence	4	5	24	1.353577	3.684561	chr11	34089484	34089623	SINE|Alu|AluJr	+	chr11	34090025	34101151	CAPRIN1|ENST00000533657.5	+	34090025,34090528,34091905,34096478,34097195,34097697,34099302	34090289,34090678,34092056,34096673,34097296,34097761,34101151	1.000000
fibroblast_of_arm_male_adult_53_years	chr4	141333553	141333590	141333575	+	RAMPAGE_only	4	5	14	0.789587	3.085055	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141636595	141733987	IL15|NM_172175.2	+	141636595,141656185,141688821,141719377,141720468,141721058,141721923,141727939,141729846,141732737	141636748,141656307,141689035,141719476,141720566,141721177,141722008,141727984,141729984,141733987	0.785714
fibroblast_of_arm_male_adult_53_years	chr11	943126	943160	943159	+	High_confidence	6	7	21	1.184380	3.366091	chr11	943120	943579	LTR|ERV1|LTR2	-	chr11	943099	972191	AP2A2|ENST00000530801.5	+	943099,959436,970168,972061	943314,959505,970311,972191	0.857143
fibroblast_of_arm_male_adult_53_years	chr1	152870030	152870060	152870030	+	RAMPAGE_only	9	9	23	1.297178	2.742412	chr1	152870069	152870228	SINE|MIR|MIRc	+	chr1	152878316	152885047	SMCP|ENST00000368765.3	+	152878316,152884402	152878446,152885047	0.956522
fibroblast_of_arm_male_adult_53_years	chr11	123061128	123061328	123061327	-	High_confidence	16	16	154	8.685454	5.635529	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.980519
fibroblast_of_arm_male_adult_53_years	chr4	54296683	54296713	54296712	+	RAMPAGE_only	3	4	10	0.563991	2.725481	chr4	54296613	54296722	DNA|hAT-Charlie|MER5B	-	chr4	54229096	54298247	PDGFRA|ENST00000257290.9	+	54229096,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54280315,54285370,54285840,54287429,54288798,54289008,54290312,54295124	54229415,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54280482,54285486,54285963,54287541,54288898,54289114,54290554,54298247	0.900000
fibroblast_of_arm_male_adult_53_years	chr13	113187330	113187344	113187338	-	High_confidence	8	10	27	1.522774	3.958229	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.851852
fibroblast_of_arm_male_adult_53_years	chr7	6590262	6590300	6590285	+	High_confidence	4	6	20	1.127981	3.787144	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.600000
fibroblast_of_arm_male_adult_53_years	chr1	42959478	42959486	42959478	+	High_confidence	6	6	13	0.733188	2.855389	chr1	42959490	42959595	LINE|L2|L2c	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.615385
fibroblast_of_arm_male_adult_53_years	chr19	18544035	18544063	18544035	-	High_confidence	4	4	10	0.563991	2.646439	chr19	18544020	18544075	SINE|MIR|MIR3	-	chr19	18538215	18544077	FKBP8|ENST00000597611.7	-	18538215,18539370,18539550,18541678,18543908	18538436,18539459,18539720,18541995,18544077	1.000000
fibroblast_of_arm_male_adult_53_years	chr9	129488730	129488905	129488856	+	High_confidence	107	107	479	27.015145	5.319295	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.981211
fibroblast_of_arm_male_adult_53_years	chr6	31836479	31836490	31836489	+	High_confidence	6	6	10	0.563991	2.725481	chr6	31836272	31836535	SINE|Alu|AluJb	-	chr6	31836842	31839764	C6orf48|ENST00000395788.3	+	31836842,31839542	31837435,31839764	0.900000
fibroblast_of_arm_male_adult_53_years	chr3	9986881	9986905	9986898	+	High_confidence	10	10	31	1.748371	4.155652	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9987214	10003097	EMC3-AS1|ENST00000440568.1	+	9987214,9987814,9988711,10002716	9987264,9987905,9988747,10003097	0.516129
fibroblast_of_arm_male_adult_53_years	chr11	27634520	27634581	27634577	-	High_confidence	23	23	57	3.214746	5.414498	chr11	27634478	27634926	LTR|ERV1|LTR7	-	chr11	27617625	27634627	LINC00678|NR_102708.1	-	27617625,27618111,27623949,27634330	27618023,27618182,27624145,27634627	0.894737
fibroblast_of_arm_male_adult_53_years	chr8	71675282	71675283	71675282	+	High_confidence	6	7	9	0.507591	2.750000	chr8	71674936	71675387	LTR|ERV1|LTR7	+	chr8	71675299	71702786	AC009446.1|ENST00000519840.1	+	71675299,71702214	71675535,71702786	0.777778
fibroblast_of_arm_male_adult_53_years	chr7	137933009	137933041	137933040	-	High_confidence	3	5	15	0.845986	3.106891	chr7	137932870	137933021	DNA|hAT-Charlie|MER5A1	-	chr7	137874978	137932988	CREB3L2|NM_001318246.1	-	137874978,137882411,137884994,137885402,137901353,137903958,137905701,137908251,137912990,137915836,137928149,137932903	137880551,137882628,137885121,137885502,137901422,137904017,137905848,137908436,137913078,137916012,137928366,137932988	1.000000
fibroblast_of_arm_male_adult_53_years	chr4	88533213	88533225	88533222	-	RAMPAGE_only	71	71	153	8.629055	5.341359	chr4	88532886	88533429	LTR|ERVL|MLT2A2	-	chr4	88520984	88523813	PYURF|ENST00000273968.4	-	88520984,88523497	88522029,88523813	0.908497
fibroblast_of_arm_male_adult_53_years	chr4	105399940	105399962	105399940	-	High_confidence	7	7	13	0.733188	2.855389	chr4	105399771	105400125	DNA|TcMar-Tigger|Tigger7	+	chr4	105369564	105399636	PPA2|ENST00000513605.5	-	105369564,105370836,105386566,105396248,105399036	105369753,105370873,105386636,105396334,105399636	0.923077
fibroblast_of_arm_male_adult_53_years	chr8	73586269	73586270	73586269	-	High_confidence	12	14	14	0.789587	3.378783	chr8	73586103	73586592	LINE|L1|HAL1	+	chr8	73421326	73585944	MSTRG.34884.6	-	73421326,73422613,73552011,73582769,73585794	73421465,73422702,73552319,73582830,73585944	1.000000
fibroblast_of_arm_male_adult_53_years	chr19	44627091	44627096	44627091	+	RAMPAGE_only	42	43	84	4.737520	3.985788	chr19	44626936	44627280	LINE|L2|L2b	-	chr19	44613629	44636781	IGSF23|ENST00000402988.5	+	44613629,44623706,44627419,44635400,44636418	44613770,44623972,44627573,44635465,44636781	0.988095
fibroblast_of_arm_male_adult_53_years	chr1	39026127	39026140	39026127	+	High_confidence	8	8	37	2.086765	4.047160	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.918919
fibroblast_of_arm_male_adult_53_years	chr3	9391827	9391828	9391827	-	High_confidence	12	12	14	0.789587	3.392747	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9389914	9391822	THUMPD3-AS1|ENST00000522221.1	-	9389914,9391426	9390497,9391822	0.642857
fibroblast_of_arm_male_adult_53_years	chr1	148279248	148279284	148279251	+	High_confidence	6	6	42	2.368760	4.470197	chr1	148279033	148279814	LINE|L1|L1MEc	+	chr1	148279274	148288164	MSTRG.2145.1	+	148279274,148287689	148279531,148288164	0.928571
fibroblast_of_arm_male_adult_53_years	chr12	55516318	55516319	55516318	+	RAMPAGE_only	6	7	7	0.394793	2.807355	chr12	55515725	55517184	LINE|L1|L1M1	+	chr12	56158160	56161574	MYL6|ENST00000550697.5	+	56158160,56158683,56159586,56159974,56160242,56160625,56161386	56158404,56158711,56159730,56160148,56160320,56160670,56161574	1.000000
fibroblast_of_arm_male_adult_53_years	chr11	7906253	7906254	7906253	-	High_confidence	21	21	24	1.353577	3.468577	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.500000
fibroblast_of_arm_male_adult_53_years	chr9	129489120	129489141	129489125	+	High_confidence	10	15	40	2.255962	4.634184	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.875000
fibroblast_of_arm_male_adult_53_years	chr15	82093996	82094082	82094031	+	RAMPAGE_only	13	13	72	4.060732	4.443484	chr15	82093781	82094459	DNA|TcMar-Tigger|Tigger7	+	chr15	82088632	82095707	LINC01583|ENST00000559788.1	+	82088632,82091726,82095481	82088728,82091935,82095707	0.847222
fibroblast_of_arm_male_adult_53_years	chr22	42721166	42721167	42721166	-	High_confidence	22	22	22	1.240779	3.226731	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	1.000000
fibroblast_of_arm_male_adult_53_years	chr19	55280217	55280251	55280217	-	High_confidence	7	8	34	1.917568	3.312036	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
fibroblast_of_arm_male_adult_53_years	chr6	52955040	52955041	52955040	+	RAMPAGE_only	40	40	40	2.255962	3.494588	chr6	52955078	52955376	SINE|Alu|AluSz6	+	chr6	52995619	52995950	RF00100|ENST00000365328.1	+	52995619	52995950	1.000000
fibroblast_of_arm_male_adult_53_years	chr1	112936000	112936022	112936000	-	High_confidence	6	7	31	1.748371	3.715932	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	0.935484
fibroblast_of_arm_male_adult_53_years	chr8	131308533	131308534	131308533	+	High_confidence	10	11	11	0.620390	3.321928	chr8	131308261	131308638	LTR|ERV1|LTR7	+	chr8	131308544	131317583	AC104257.1|ENST00000519695.5	+	131308544,131310552,131312555,131315759,131317333	131308671,131310712,131312748,131315883,131317583	0.909091
fibroblast_of_arm_male_adult_53_years	chr1	151166624	151166683	151166679	+	High_confidence	10	20	82	4.624722	5.393294	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	0.951220
fibroblast_of_arm_male_adult_53_years	chr13	109272198	109272203	109272202	+	RAMPAGE_only	52	57	81	4.568323	5.222970	chr13	109271794	109272374	LTR|ERV1|LTR9	+	chr13	109269633	109273838	AL161431.1|ENST00000618966.1	+	109269633	109273838	0.641975
fibroblast_of_arm_male_adult_53_years	chr10	31808653	31808675	31808653	-	High_confidence	3	3	11	0.620390	3.121928	chr10	31808386	31808622	SINE|MIR|MIRb	-	chr10	31806290	31808551	ARHGAP12|ENST00000497085.1	-	31806290,31808452	31807832,31808551	0.818182
fibroblast_of_arm_male_adult_53_years	chr9	129698737	129698760	129698743	+	High_confidence	101	108	587	33.106243	5.519798	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129698709	129722674	MSTRG.37051.3	+	129698709,129719230,129720595,129722216	129698809,129719418,129720774,129722674	0.974446
fibroblast_of_arm_male_adult_53_years	chr9	127531649	127531704	127531649	-	RAMPAGE_only	3	3	14	0.789587	3.039149	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.714286
fibroblast_of_arm_male_adult_53_years	chr2	121902533	121902534	121902533	+	High_confidence	16	17	18	1.015183	3.337175	chr2	121902488	121902606	LINE|L2|L2a	-	chr2	121902499	122042513	MSTRG.20822.1	+	121902499,121944333,122040190,122041032	121902989,121944447,122040306,122042513	0.777778
fibroblast_of_arm_male_adult_53_years	chr12	75487807	75487808	75487807	+	RAMPAGE_only	6	6	6	0.338394	2.584963	chr12	75487739	75488253	LTR|ERV1|MER41A	-	chr12	75480752	75502123	MSTRG.8595.2	+	75480752,75481833,75490405,75495576,75498693,75498823,75501240	75481054,75482079,75490518,75495662,75498720,75501184,75502123	1.000000
fibroblast_of_arm_male_adult_53_years	chr17	41108228	41108282	41108230	+	High_confidence	40	104	422	23.800399	5.722667	chr17	41107954	41108546	LTR|ERV1|MER4-int	+	chr17	41108245	41113299	MSTRG.15616.1	+	41108245,41110003	41108379,41113299	0.973934
fibroblast_of_arm_male_adult_53_years	chr9	20658318	20658349	20658346	+	High_confidence	12	12	65	3.665938	4.065163	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658320	20995948	MSTRG.35944.2	+	20658320,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	0.692308
fibroblast_of_arm_male_adult_53_years	chr19	33395177	33395191	33395177	-	High_confidence	6	7	15	0.845986	2.556657	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	0.933333
fibroblast_of_arm_male_adult_53_years	chr8	143039233	143039265	143039246	+	High_confidence	8	10	33	1.861169	3.744204	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.909091
fibroblast_of_arm_male_adult_53_years	chr12	15780717	15780730	15780729	-	High_confidence	15	15	28	1.579173	3.566109	chr12	15780696	15780826	LINE|L2|L2c	+	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.678571
fibroblast_of_arm_male_adult_53_years	chr5	147382886	147382895	147382894	+	High_confidence	9	9	25	1.409976	3.733661	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.800000
fibroblast_of_arm_male_adult_53_years	chr1	153549103	153549134	153549133	-	High_confidence	21	24	65	3.665938	4.998840	chr1	153549066	153549188	SINE|MIR|MIRb	+	chr1	153547512	153549126	S100A3|ENST00000368712.1	-	153547512,153548344,153549027	153547846,153548490,153549126	0.630769
fibroblast_of_arm_male_adult_53_years	chr12	56157322	56157354	56157348	+	High_confidence	23	23	143	8.065064	4.355528	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.888112
fibroblast_of_arm_male_adult_53_years	chr11	64226142	64226180	64226142	-	High_confidence	61	61	359	20.247259	6.723842	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64224202	64226148	TRPT1|ENST00000545812.1	-	64224202,64224284,64224542,64224794,64225498,64225785,64226049	64224210,64224341,64224717,64224970,64225580,64225869,64226148	0.568245
fibroblast_of_arm_male_adult_53_years	chr13	111337451	111337463	111337458	+	RAMPAGE_only	3	3	14	0.789587	3.182006	chr13	111337198	111337649	LTR|ERVL-MaLR|MLT1F	-	chr13	111320667	111344247	TEX29|ENST00000283547.1	+	111320667,111320856,111328182,111339862,111342755,111344082	111320762,111320948,111328293,111339932,111342931,111344247	1.000000
fibroblast_of_arm_male_adult_53_years	chr8	99892056	99892057	99892056	-	RAMPAGE_only	149	149	178	10.039031	4.896776	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.983146
fibroblast_of_arm_male_adult_53_years	chr12	104287754	104287784	104287754	+	High_confidence	4	4	12	0.676789	2.522055	chr12	104287727	104287918	SINE|MIR|MIR	+	chr12	104287367	104348644	TXNRD1|ENST00000524698.5	+	104287367,104288930,104311289,104313244,104315776,104318912,104319469,104321090,104325336,104326346,104327514,104331533,104334236,104339138,104348352	104287431,104289040,104311412,104313317,104315896,104319055,104319585,104321316,104325429,104326423,104327671,104331641,104334332,104339273,104348644	1.000000
fibroblast_of_arm_male_adult_53_years	chr18	7946867	7946898	7946878	+	High_confidence	41	41	122	6.880684	5.400516	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8113763	MSTRG.16829.6	+	7946869,7949180,7955120,8069685,8076454,8085670,8088748,8113485	7946977,7949355,7955414,8069994,8076564,8085872,8088851,8113763	1.000000
fibroblast_of_arm_male_adult_53_years	chr1	154975497	154975546	154975524	+	High_confidence	19	19	65	3.665938	4.315413	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.892308
fibroblast_of_arm_male_adult_53_years	chr2	96303166	96303178	96303177	-	RAMPAGE_only	4	4	9	0.507591	2.500000	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.888889
fibroblast_of_arm_male_adult_53_years	chr9	77822994	77822998	77822997	-	RAMPAGE_only	20	21	36	2.030366	3.803387	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77716273	78031449	GNAQ|NM_002072.4	-	77716273,77728513,77794462,77797519,77815615,77922160,78031099	77721513,77728667,77794592,77797648,77815770,77922345,78031449	0.833333
fibroblast_of_arm_male_adult_53_years	chr8	143281653	143281687	143281686	-	High_confidence	28	29	111	6.260295	5.340738	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.603604
fibroblast_of_arm_male_adult_53_years	chr6	43013392	43013393	43013392	-	High_confidence	34	34	37	2.086765	4.844324	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
fibroblast_of_arm_male_adult_53_years	chr20	50267451	50267478	50267451	+	High_confidence	3	3	11	0.620390	2.921928	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.909091
fibroblast_of_arm_male_adult_53_years	chr6	122444139	122444571	122444187	-	RAMPAGE_only	11	14	217	12.238594	5.270775	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	0.995392
fibroblast_of_arm_male_adult_53_years	chr18	8701808	8701854	8701808	+	RAMPAGE_only	13	13	22	1.240779	2.845351	chr18	8701808	8702158	LTR|ERVL|LTR33A	-	chr18	8705551	8832778	MSTRG.16826.1	+	8705551,8718423,8720337,8777832,8783529,8785935,8796231,8798096,8806892,8812978,8818962,8821466,8824698,8831606	8706713,8718648,8720496,8777892,8784843,8786091,8796462,8798291,8807060,8813233,8819259,8821498,8826232,8832778	0.954545
fibroblast_of_arm_male_adult_53_years	chr19	3062922	3062950	3062922	-	High_confidence	21	24	46	2.594356	4.075101	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.956522
fibroblast_of_arm_male_adult_53_years	chr13	43055410	43055412	43055410	+	RAMPAGE_only	7	14	17	0.958784	3.175123	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.647059
fibroblast_of_arm_male_adult_53_years	chr7	99410086	99410113	99410086	+	High_confidence	3	3	18	1.015183	3.499228	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.944444
fibroblast_of_arm_male_adult_53_years	chrX	81262650	81262682	81262672	+	RAMPAGE_only	4	4	13	0.733188	3.238901	chrX	81262192	81262806	LINE|L1|L1MD3	+	chrX	81255493	81297516	SH3BGRL|ENST00000474113.1	+	81255493,81276983,81278330,81297194	81255643,81277169,81278411,81297516	0.769231
fibroblast_of_arm_male_adult_53_years	chr3	9987152	9987163	9987162	+	High_confidence	19	19	39	2.199563	3.549787	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9987214	10003097	EMC3-AS1|ENST00000440568.1	+	9987214,9987814,9988711,10002716	9987264,9987905,9988747,10003097	0.512821
fibroblast_of_arm_male_adult_53_years	chr5	32403121	32403167	32403148	-	RAMPAGE_only	3	3	16	0.902385	2.625000	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
fibroblast_of_arm_male_adult_53_years	chr7	54759973	54759974	54759973	-	High_confidence	24	24	26	1.466375	3.292481	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.923077
fibroblast_of_arm_male_adult_53_years	chr3	33864078	33864098	33864078	+	RAMPAGE_only	3	4	18	1.015183	3.616875	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33811062	33869702	MSTRG.24565.10	+	33811062,33812071,33813558,33821954,33825186,33826479,33828852,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350,33868568	33811191,33812126,33813628,33822082,33825340,33826580,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33868504,33869702	0.944444
fibroblast_of_arm_male_adult_53_years	chr20	3795750	3795789	3795788	+	High_confidence	12	12	64	3.609539	4.321220	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	1.000000
fibroblast_of_arm_male_adult_53_years	chr2	111480260	111480261	111480260	-	High_confidence	20	21	21	1.184380	2.801609	chr2	111480041	111480456	LTR|ERVL-MaLR|MLT1C	-	chr2	111429322	111480261	MIR4435-2HG|ENST00000442293.5	-	111429322,111479906,111480168	111429620,111480061,111480261	0.857143
fibroblast_of_arm_male_adult_53_years	chr8	131310461	131310462	131310461	+	High_confidence	32	33	41	2.312361	4.448861	chr8	131310174	131310564	LTR|ERV1|LTR7	+	chr8	131310471	131317506	AC104257.1|ENST00000519005.1	+	131310471,131312555,131315759,131317333	131310712,131312748,131315883,131317506	0.926829
fibroblast_of_arm_male_adult_53_years	chr3	157533600	157533641	157533600	-	High_confidence	426	448	824	46.472817	6.606172	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157413874	157533606	MSTRG.26115.8	-	157413874,157428321,157460180,157470313,157495211,157533512	157414090,157428488,157460355,157470529,157495506,157533606	0.934466
fibroblast_of_arm_male_adult_53_years	chr4	77011249	77011250	77011249	+	RAMPAGE_only	11	11	17	0.958784	3.734522	chr4	77011235	77011415	DNA|hAT-Charlie|MER117	+	chr4	77014870	77021639	SEPT11|ENST00000506047.1	+	77014870,77019164,77020501	77015017,77019261,77021639	0.705882
fibroblast_of_arm_male_adult_53_years	chr22	35648270	35648276	35648275	+	High_confidence	7	7	19	1.071582	3.616349	chr22	35648269	35648319	SINE|MIR|MIR3	-	chr22	35648376	35668409	APOL6|NM_030641.3	+	35648376,35656378,35658614	35648623,35656475,35668409	1.000000
fibroblast_of_arm_male_adult_53_years	chr6	5466702	5466725	5466724	+	RAMPAGE_only	18	20	31	1.748371	4.195816	chr6	5466680	5466808	DNA|hAT-Charlie|MER5B	-	chr6	5261525	5771580	FARS2|ENST00000274680.8	+	5261525,5368549,5404541,5431040,5545179,5613168,5771290	5261660,5369182,5404701,5431172,5545340,5613320,5771580	0.741935
fibroblast_of_arm_male_adult_53_years	chr18	36807869	36807888	36807869	-	High_confidence	8	10	19	1.071582	3.392147	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.947368
fibroblast_of_arm_male_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	80	80	81	4.568323	3.634106	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.962963
fibroblast_of_arm_male_adult_53_years	chr4	92277301	92277302	92277301	-	High_confidence	25	25	27	1.522774	4.403856	chr4	92277197	92277648	LTR|ERV1|LTR7	-	chr4	92262497	92277302	LOC101929194|NR_125920.1	-	92262497,92269242,92277049	92263355,92269356,92277302	0.740741
fibroblast_of_arm_male_adult_53_years	chr9	36040850	36040866	36040865	+	RAMPAGE_only	4	7	10	0.563991	2.721928	chr9	36040076	36040898	LINE|L2|L2a	-	chr9	36036939	36086195	RECK|ENST00000479053.1	+	36036939,36052264,36058826,36060118,36063794,36065576,36080604,36083364,36085174	36037098,36052323,36058901,36060155,36063880,36065624,36080638,36083562,36086195	0.900000
fibroblast_of_arm_male_adult_53_years	chr9	32997349	32997350	32997349	-	High_confidence	7	8	9	0.507591	2.725481	chr9	32997347	32997748	LINE|L2|L2c	-	chr9	32972762	32997360	APTX|ENST00000479656.5	-	32972762,32974457,32984630,32985970,32987543,32988078,32989758,32997242	32973652,32974561,32984857,32986030,32987842,32988124,32989895,32997360	1.000000
fibroblast_of_arm_male_adult_53_years	chr4	7844653	7844664	7844653	-	RAMPAGE_only	4	4	8	0.451192	2.500000	chr4	7844479	7844672	LINE|L2|L2b	+	chr4	7838587	7862311	AFAP1|ENST00000513856.1	-	7838587,7843138,7855465,7861984	7838703,7843350,7855574,7862311	0.750000
fibroblast_of_arm_male_adult_53_years	chr10	32982537	32982551	32982550	+	High_confidence	4	6	13	0.733188	2.931209	chr10	32982518	32982768	SINE|Alu|AluSz6	-	chr10	32982540	33082102	ITGB1-DT|ENST00000414157.1	+	32982540,32985622,33081341	32982685,32985757,33082102	0.846154
fibroblast_of_arm_male_adult_53_years	chr5	83096140	83096192	83096152	+	RAMPAGE_only	12	15	38	2.143164	4.378240	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	0.973684
fibroblast_of_arm_male_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	153	154	154	8.685454	4.573515	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.928571
fibroblast_of_arm_male_adult_53_years	chrX	7147287	7147288	7147287	+	High_confidence	12	13	16	0.902385	3.250000	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	1.000000
fibroblast_of_arm_male_adult_53_years	chr2	55618850	55618889	55618850	-	High_confidence	13	13	32	1.804770	3.460590	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.968750
fibroblast_of_arm_male_adult_53_years	chr7	134711498	134711504	134711503	+	RAMPAGE_only	14	14	39	2.199563	4.754378	chr7	134711275	134711628	LTR|ERVL|MLT2D	+	chr7	134744251	134968402	CALD1|ENST00000417172.5	+	134744251,134843883,134867692,134928753,134932987,134941091,134947507,134950373,134958068,134958208,134959973,134960532,134965305,134968339	134744363,134843971,134867804,134928900,134933390,134941237,134947769,134950514,134958112,134958290,134960111,134960628,134965386,134968402	0.948718
fibroblast_of_arm_male_adult_53_years	chr12	45973705	45973724	45973723	-	RAMPAGE_only	8	8	17	0.958784	3.616875	chr12	45973038	45974003	LINE|L1|L1MD2	+	chr12	45919130	45990565	SCAF11|ENST00000369367.7	-	45919130,45922462,45922935,45924727,45926141,45931505,45933130,45934175,45934446,45945248,45948436,45951649,45961699,45964106,45990352	45922194,45922582,45923154,45925074,45928859,45931612,45933232,45934285,45934505,45945313,45948537,45951727,45961857,45964188,45990565	0.823529
fibroblast_of_arm_male_adult_53_years	chr15	39118691	39118748	39118725	-	High_confidence	17	17	70	3.947934	4.908913	chr15	39113911	39121297	LINE|L1|L1PA16	+	chr15	38865321	39118713	AC013652.1|ENST00000560197.5	-	38865321,38867969,38868311,38885496,38886696,38974154,39071502,39118649	38865722,38868184,38868457,38885628,38886929,38974235,39071608,39118713	0.614286
fibroblast_of_arm_male_adult_53_years	chr3	169812897	169812904	169812903	-	High_confidence	10	10	17	0.958784	3.125000	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.941176
fibroblast_of_arm_male_adult_53_years	chr7	101217578	101217595	101217578	-	High_confidence	7	7	24	1.353577	4.053509	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
fibroblast_of_arm_male_adult_53_years	chr5	74715626	74715690	74715689	+	High_confidence	6	6	18	1.015183	2.668839	chr5	74715734	74716041	SINE|Alu|AluSx1	+	chr5	74715585	74721288	HEXB|ENST00000513336.5	+	74715585,74718290,74718796,74720427,74720642,74721117	74715690,74718363,74718971,74720518,74720747,74721288	1.000000
fibroblast_of_arm_male_adult_53_years	chr2	201115977	201116019	201115997	+	High_confidence	6	6	16	0.902385	2.899397	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	1.000000
fibroblast_of_arm_male_adult_53_years	chr5	151687233	151687251	151687244	-	High_confidence	28	28	74	4.173530	4.782931	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687277	MSTRG.29818.1	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687277	0.918919
fibroblast_of_arm_male_adult_53_years	chr22	18149848	18149869	18149868	+	High_confidence	7	7	17	0.958784	2.899397	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.941176
fibroblast_of_arm_male_adult_53_years	chr19	35164159	35164236	35164228	+	High_confidence	8	8	68	3.835135	3.589605	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	1.000000
fibroblast_of_arm_male_adult_53_years	chr8	32927967	32927984	32927976	+	RAMPAGE_only	139	154	437	24.646385	6.359625	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.970252
fibroblast_of_arm_male_adult_53_years	chr6	2990742	2990755	2990742	-	RAMPAGE_only	8	9	25	1.409976	3.251629	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.880000
fibroblast_of_arm_male_adult_53_years	chr8	56559496	56559521	56559496	-	High_confidence	961	1014	2045	115.336058	7.735178	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.658191
fibroblast_of_arm_male_adult_53_years	chr17	47067498	47067513	47067498	-	High_confidence	131	146	485	27.353539	5.847511	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.907216
fibroblast_of_arm_male_adult_53_years	chr1	147173225	147173261	147173225	+	High_confidence	7	9	29	1.635572	4.039149	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.862069
fibroblast_of_arm_male_adult_53_years	chr7	40815713	40815732	40815713	+	RAMPAGE_only	22	22	37	2.086765	3.884601	chr7	40810256	40816712	LINE|L1|L1PA16	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.972973
fibroblast_of_arm_male_adult_53_years	chr5	155898667	155898689	155898688	+	RAMPAGE_only	5	5	12	0.676789	2.663533	chr5	155898607	155898749	LTR|ERVL-MaLR|MLT1L	-	chr5	155870343	156758055	SGCD|ENST00000517913.5	+	155870343,156117877,156123855,156329533,156344488,156508600,156589230,156594931,156647463,156757580	155870424,156117951,156124019,156329579,156344677,156508702,156589318,156595051,156647536,156758055	0.750000
fibroblast_of_arm_male_adult_53_years	chr4	53347608	53347609	53347608	-	RAMPAGE_only	6	6	8	0.451192	2.500000	chr4	53347330	53347842	LINE|L2|L2a	-	chr4	53273578	53365941	SCFD2|ENST00000611795.1	-	53273578,53273825,53313635,53352597,53365103	53273587,53274001,53313763,53352766,53365941	1.000000
fibroblast_of_arm_male_adult_53_years	chr6	57505666	57505669	57505668	+	RAMPAGE_only	13	21	27	1.522774	2.660504	chr6	57505549	57505742	LINE|L2|L2a	-	chr6	57317623	57646849	PRIM2|ENST00000615550.4	+	57317623,57318436,57320456,57324200,57325924,57379900,57382030,57507386,57532410,57537439,57601092,57606374,57632132,57645927	57317701,57318599,57320560,57324280,57326045,57379996,57382168,57507454,57532483,57537625,57601219,57606457,57632201,57646849	0.925926
fibroblast_of_arm_male_adult_53_years	chr5	154409575	154409610	154409591	+	RAMPAGE_only	6	6	16	0.902385	2.827820	chr5	154409601	154409687	LINE|L1|L1PREC2	+	chr5	154403776	154419033	GALNT10|ENST00000517958.1	+	154403776,154409540,154412888,154415782,154416813	154404216,154409762,154413005,154415932,154419033	1.000000
fibroblast_of_arm_male_adult_53_years	chr4	28376563	28376564	28376563	-	High_confidence	950	1053	1180	66.550879	5.742321	chr4	28376326	28376771	LTR|ERVL|MLT2A2	-	chr4	28315804	28376554	MSTRG.26901.1	-	28315804,28370699,28376401	28317538,28370799,28376554	0.866949
fibroblast_of_arm_male_adult_53_years	chr21	28539619	28539620	28539619	+	High_confidence	7	7	8	0.451192	2.521641	chr21	28539394	28539851	LTR|ERVL-MaLR|MLT1C	+	chr21	28539317	28540355	LINC00161|NR_026553.1	+	28539317,28540052	28539528,28540355	0.500000
fibroblast_of_arm_male_adult_53_years	chr9	111662085	111662136	111662115	+	High_confidence	6	7	33	1.861169	4.202820	chr9	111662069	111662225	LINE|L2|L2	-	chr9	111661570	111670246	GNG10|NM_001198664.1	+	111661570,111666814,111669271	111661715,111666946,111670246	0.969697
fibroblast_of_arm_male_adult_53_years	chr3	33838219	33838261	33838239	+	RAMPAGE_only	5	5	15	0.845986	3.039149	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.800000
fibroblast_of_arm_male_adult_53_years	chr20	44738984	44738993	44738984	-	High_confidence	4	4	19	1.071582	3.286629	chr20	44738735	44739078	LTR|ERVL-MaLR|MLT1J2	-	chr20	44694891	44738896	KCNK15-AS1|ENST00000427598.5	-	44694891,44716624,44738819	44695507,44716793,44738896	0.684211
fibroblast_of_arm_male_adult_53_years	chr3	54639856	54639857	54639856	-	High_confidence	15	15	18	1.015183	3.947703	chr3	54639752	54640204	LTR|ERV1|LTR7	-	chr3	54632121	54639857	ESRG|ENST00000583516.1	-	54632121,54633558,54634460,54637690	54632807,54633740,54634565,54639857	1.000000
fibroblast_of_arm_male_adult_53_years	chr21	36005313	36005320	36005313	+	High_confidence	270	290	488	27.522737	6.275284	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.940574
fibroblast_of_arm_male_adult_53_years	chr19	20423688	20423704	20423703	-	RAMPAGE_only	16	22	75	4.229929	3.543267	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.893333
fibroblast_of_arm_male_adult_53_years	chrX	16712879	16712890	16712879	-	High_confidence	5	5	9	0.507591	2.725481	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	1.000000
fibroblast_of_arm_male_adult_53_years	chr8	73585942	73585943	73585942	-	High_confidence	41	41	45	2.537957	4.314783	chr8	73585756	73586094	LTR|ERVL-MaLR|THE1C	+	chr8	73421326	73585944	MSTRG.34884.6	-	73421326,73422613,73552011,73582769,73585794	73421465,73422702,73552319,73582830,73585944	0.888889
fibroblast_of_arm_male_adult_53_years	chr20	45833349	45833356	45833349	-	High_confidence	3	3	8	0.451192	2.750000	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
fibroblast_of_arm_male_adult_53_years	chr15	32684251	32684252	32684251	+	High_confidence	6	6	8	0.451192	2.750000	chr15	32683924	32684364	LTR|ERVL-MaLR|MLT1J1	-	chr15	32684415	32692308	SCG5|ENST00000498607.2	+	32684415,32691709	32684669,32692308	0.875000
fibroblast_of_arm_male_adult_53_years	chr3	135965670	135965765	135965733	+	High_confidence	24	29	348	19.626870	6.282228	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.971264
fibroblast_of_arm_male_adult_53_years	chr14	51638104	51638112	51638111	-	High_confidence	8	16	31	1.748371	3.935399	chr14	51637996	51638291	SINE|Alu|AluJr4	+	chr14	51637347	51637947	AL122125.1|ENST00000616999.1	-	51637347	51637947	0.516129
fibroblast_of_arm_male_adult_53_years	chr20	45833293	45833310	45833293	-	High_confidence	13	14	66	3.722337	4.305261	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
fibroblast_of_arm_male_adult_53_years	chr11	17282813	17282822	17282821	+	RAMPAGE_only	5	5	11	0.620390	2.921928	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.909091
fibroblast_of_arm_male_adult_53_years	chr11	72113613	72113704	72113613	-	High_confidence	5	5	44	2.481558	4.442862	chr11	72113605	72113746	SINE|MIR|MIRc	+	chr11	72109586	72112780	ANAPC15|ENST00000227618.8	-	72109586,72110087,72110543,72111156,72111411,72112649	72109928,72110225,72110603,72111286,72111496,72112780	0.977273
fibroblast_of_arm_male_adult_53_years	chr1	240285406	240285440	240285406	+	High_confidence	9	9	17	0.958784	3.263933	chr1	240285122	240285870	LINE|L2|L2c	-	chr1	240285264	240475183	MSTRG.3491.7	+	240285264,240294821,240329075,240329338,240330602,240333886,240334108,240355815,240392510,240438060,240472371,240474127	240285523,240294883,240329167,240329468,240330749,240333946,240334229,240355908,240392562,240438210,240472453,240475183	0.941176
fibroblast_of_arm_male_adult_53_years	chr5	39389852	39389879	39389852	-	RAMPAGE_only	3	3	11	0.620390	2.663533	chr5	39389517	39389811	SINE|Alu|AluSx1	-	chr5	39373020	39394400	DAB2|ENST00000509337.5	-	39373020,39375013,39375996,39376649,39381453,39382617,39388798,39389096,39389851,39390443,39392364,39393253,39394229	39373425,39375084,39376106,39377282,39381616,39383271,39388852,39389123,39389932,39390575,39392463,39393393,39394400	1.000000
fibroblast_of_arm_male_adult_53_years	chr10	78977922	78977929	78977928	-	RAMPAGE_only	7	9	16	0.902385	3.125000	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78962394	ZMIZ1-AS1|ENST00000428862.5	-	78943327,78945911,78960504,78961253	78944747,78945989,78960716,78962394	0.562500
fibroblast_of_arm_male_adult_53_years	chr9	125650426	125650444	125650426	-	High_confidence	5	6	17	0.958784	3.375000	chr9	125649959	125650542	LINE|L2|L2b	+	chr9	125444500	125650417	MAPKAP1|ENST00000420643.5	-	125444500,125467971,125484442,125543058,125559632,125585554,125599834,125650363	125444598,125468109,125484583,125543168,125559809,125585727,125599927,125650417	0.941176
fibroblast_of_arm_male_adult_53_years	chr10	32954322	32954334	32954322	-	RAMPAGE_only	4	4	9	0.507591	2.500000	chr10	32953969	32954360	LINE|L2|L2	+	chr10	32928149	32955663	ITGB1|ENST00000480226.5	-	32928149,32929821,32932514,32935491,32955569	32928264,32930044,32932600,32935558,32955663	0.888889
fibroblast_of_arm_male_adult_53_years	chr1	200411799	200411800	200411799	+	High_confidence	28	29	37	2.086765	4.067165	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411799	200475513	AC104461.1|ENST00000634596.1	+	200411799,200473908	200411962,200475513	0.918919
fibroblast_of_arm_male_adult_53_years	chr2	3536836	3536875	3536839	-	High_confidence	6	6	34	1.917568	4.373796	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.852941
fibroblast_of_arm_male_adult_53_years	chr17	4143196	4143215	4143199	+	High_confidence	131	138	313	17.652903	5.708857	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.996805
fibroblast_of_arm_male_adult_53_years	chr5	172958875	172958925	172958918	+	High_confidence	49	54	171	9.644238	4.745261	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.988304
fibroblast_of_arm_male_adult_53_years	chr7	2242922	2242923	2242922	+	High_confidence	17	17	17	0.958784	3.852169	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
fibroblast_of_arm_male_adult_53_years	chr3	120596741	120596764	120596763	-	RAMPAGE_only	4	4	13	0.733188	3.238901	chr3	120596706	120596936	SINE|MIR|MIR	+	chr3	120392292	120451253	FSTL1|ENST00000295633.7	-	120392292,120399882,120402807,120403241,120404852,120409531,120410951,120411853,120415922,120450683,120450896	120396996,120399959,120402918,120403354,120404971,120409662,120410984,120411983,120416027,120450746,120451253	0.692308
fibroblast_of_arm_male_adult_53_years	chr4	183350824	183350865	183350824	-	RAMPAGE_only	32	32	170	9.587839	5.166636	chr4	183350819	183350967	LTR|ERVL-MaLR|MLT1C	+	chr4	183334116	183349819	MSTRG.28107.1	-	183334116,183334469,183349679	183334376,183334553,183349819	0.600000
fibroblast_of_arm_male_adult_53_years	chr7	107580245	107580267	107580264	+	High_confidence	1549	1564	6513	367.327015	6.745466	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.963304
fibroblast_of_arm_male_adult_53_years	chr11	14337228	14337263	14337228	-	High_confidence	7	7	20	1.127981	3.521928	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.600000
fibroblast_of_arm_male_adult_53_years	chr14	61700542	61700543	61700542	+	RAMPAGE_only	14	14	19	1.071582	3.308271	chr14	61700144	61700806	LINE|L1|L1MB2	-	chr14	61698894	61727632	HIF1A|ENST00000557206.1	+	61698894,61720381,61721508,61721738,61726705,61727452	61698946,61720572,61721654,61721823,61726818,61727632	0.894737
fibroblast_of_arm_male_adult_53_years	chr10	122852351	122852363	122852351	-	RAMPAGE_only	5	5	15	0.845986	2.872906	chr10	122852085	122852506	LINE|L1|L1MCa	+	chr10	122832148	122850793	CUZD1|ENST00000368904.5	-	122832148,122833671,122834705,122836177,122836830,122837403,122839016,122841177,122845761,122849236,122850423	122832450,122833940,122835097,122836350,122837048,122837554,122839231,122841328,122846220,122849439,122850793	0.866667
fibroblast_of_arm_male_adult_53_years	chr14	51999398	51999399	51999398	+	RAMPAGE_only	4	6	7	0.394793	2.584963	chr14	51999398	51999494	DNA|TcMar-Tigger|MER47C	-	chr14	52004011	52004692	RTRAF|ENST00000553479.1	+	52004011,52004361	52004242,52004692	0.857143
fibroblast_of_arm_male_adult_53_years	chr15	38886912	38886939	38886912	-	RAMPAGE_only	7	7	20	1.127981	3.721612	chr15	38886756	38887137	LTR|ERVL-MaLR|MLT1J2	-	chr15	38882958	39194316	MSTRG.11906.2	-	38882958,38886696,38908185,38974154,39071502,39194077	38885628,38886929,38908260,38974235,39071608,39194316	0.950000
fibroblast_of_arm_male_adult_53_years	chr15	80059915	80059933	80059918	+	High_confidence	155	167	445	25.097577	5.241139	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.977528
fibroblast_of_arm_male_adult_53_years	chr3	157487448	157487449	157487448	-	RAMPAGE_only	121	142	150	8.459858	4.630539	chr3	157486755	157488128	LINE|L1|L1ME3C	+	chr3	157460094	157489356	VEPH1|ENST00000482434.1	-	157460094,157470313,157489054	157460355,157470529,157489356	0.833333
fibroblast_of_arm_male_adult_53_years	chr17	41521744	41521773	41521744	-	High_confidence	2	2	11	0.620390	2.663533	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41513745	41521719	KRT15|ENST00000393976.6	-	41513745,41514648,41515471,41515884,41516103,41516807,41517082,41518329,41519344,41521684	41514120,41514674,41515692,41516010,41516265,41516964,41517165,41519010,41519872,41521719	1.000000
fibroblast_of_arm_male_adult_53_years	chr18	48621508	48621565	48621524	+	High_confidence	14	16	44	2.481558	4.695576	chr18	48621468	48621857	LINE|L2|L2a	-	chr18	48621443	48711657	CTIF|ENST00000589585.1	+	48621443,48636613,48663751,48664446,48670668,48711618	48621641,48636685,48663825,48664551,48670744,48711657	0.636364
fibroblast_of_arm_male_adult_53_years	chrY	7434409	7434421	7434410	+	High_confidence	178	205	525	29.609501	6.374374	chrY	7433952	7434581	LTR|ERV1|MER41B	+	chrY	7434414	7520470	MSTRG.38459.1	+	7434414,7501008,7518939,7520079	7434577,7501167,7519048,7520470	0.961905
fibroblast_of_arm_male_adult_53_years	chr1	16981569	16981642	16981575	-	High_confidence	186	186	821	46.303620	5.821534	chr1	16981567	16981905	LTR|ERV1|LTR64	+	chr1	16974501	16981586	MFAP2|NM_001135247.1	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16981513	16975023,16975342,16975730,16976545,16976794,16976923,16977195,16978314,16981586	0.958587
fibroblast_of_arm_male_adult_53_years	chr19	49539150	49539152	49539151	+	RAMPAGE_only	8	12	18	1.015183	3.130718	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49528543	49543633	MSTRG.19030.3	+	49528543,49534192,49537032,49539007,49542552,49543161	49528714,49534395,49537205,49539179,49542752,49543633	0.944444
fibroblast_of_arm_male_adult_53_years	chr5	151669675	151669724	151669675	-	RAMPAGE_only	64	73	314	17.709302	6.034853	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.996815
fibroblast_of_arm_male_adult_53_years	chr15	49466534	49466558	49466534	+	RAMPAGE_only	2	2	8	0.451192	2.750000	chr15	49466435	49466744	LINE|L2|L2c	-	chr15	49434395	49484520	FGF7|ENST00000560704.1	+	49434395,49483150,49484309	49434653,49483254,49484520	0.875000
fibroblast_of_arm_male_adult_53_years	chr1	54413492	54413493	54413492	-	High_confidence	6	6	8	0.451192	2.500000	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54243236	54413479	SSBP3|ENST00000525990.1	-	54243236,54251615,54251793,54257126,54281437,54401860,54404575,54404857,54413355	54243299,54251692,54251860,54257186,54281527,54401945,54404637,54404930,54413479	0.750000
fibroblast_of_arm_male_adult_53_years	chr11	72111496	72111497	72111496	-	High_confidence	4	6	6	0.338394	2.584963	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72108817	72111497	ANAPC15|ENST00000538117.5	-	72108817,72109228,72110087,72110543,72111156,72111411	72108875,72109341,72110225,72110603,72111281,72111497	0.500000
fibroblast_of_arm_male_adult_53_years	chr6	99521916	99521922	99521921	-	High_confidence	44	44	72	4.060732	4.611357	chr6	99521850	99522167	SINE|Alu|AluJr	-	chr6	99508725	99521728	USP45|ENST00000508908.1	-	99508725,99510120,99520939,99521650	99508782,99510230,99521163,99521728	0.500000
fibroblast_of_arm_male_adult_53_years	chrX	47658609	47658630	47658609	-	High_confidence	8	8	27	1.522774	2.625853	chrX	47658369	47658606	SINE|MIR|MIR	-	chrX	47651800	47659107	UXT|ENST00000485641.5	-	47651800,47652080,47657182,47657781,47658829	47651895,47652144,47657290,47657863,47659107	1.000000
fibroblast_of_arm_male_adult_53_years	chr4	102431178	102431180	102431179	-	High_confidence	4	7	10	0.563991	2.921928	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	1.000000
fibroblast_of_arm_male_adult_53_years	chr17	82076525	82076526	82076525	-	RAMPAGE_only	11	12	12	0.676789	2.732159	chr17	82076254	82076887	LINE|L1|L1MEc	-	chr17	81511345	81523847	ACTG1|ENST00000575994.5	-	81511345,81511902,81512231,81523641	81511626,81512142,81512360,81523847	0.916667
fibroblast_of_arm_male_adult_53_years	chr1	200483578	200483582	200483578	-	High_confidence	32	33	58	3.271145	4.752137	chr1	200483479	200483655	DNA|hAT-Charlie|MER5B	+	chr1	200462754	200483604	MSTRG.2986.1	-	200462754,200478012,200483101	200465566,200478154,200483604	0.982759
fibroblast_of_arm_male_adult_53_years	chr11	58578101	58578133	58578102	-	High_confidence	8	12	30	1.691972	3.894740	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.600000
fibroblast_of_arm_male_adult_53_years	chr4	122828271	122828277	122828271	+	RAMPAGE_only	5	7	14	0.789587	2.753434	chr4	122828204	122828294	DNA|hAT-Charlie|MER5A	-	chr4	122826830	122895464	FGF2|ENST00000608478.1	+	122826830,122876320,122892210	122827352,122876424,122895464	0.785714
fibroblast_of_arm_male_adult_53_years	chr4	88533301	88533317	88533301	-	RAMPAGE_only	4	4	15	0.845986	2.950212	chr4	88532886	88533429	LTR|ERVL|MLT2A2	-	chr4	88520984	88523813	PYURF|ENST00000273968.4	-	88520984,88523497	88522029,88523813	0.866667
fibroblast_of_arm_male_adult_53_years	chr1	153967486	153967528	153967486	+	High_confidence	8	9	20	1.127981	3.076103	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.850000
fibroblast_of_arm_male_adult_53_years	chr3	194486602	194486631	194486602	-	High_confidence	6	6	19	1.071582	3.281036	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402688	194486659	MSTRG.26475.6	-	194402688,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194486659	0.947368
fibroblast_of_arm_male_adult_53_years	chr5	167721348	167721349	167721348	+	RAMPAGE_only	7	7	7	0.394793	2.807355	chr5	167721329	167721823	LTR|ERVL-MaLR|MLT1D	-	chr5	167754935	168264157	TENM2|ENST00000519204.5	+	167754935,167875985,167952587,167992943,168047426,168062059,168090573,168098025,168118291,168124849,168126753,168162610,168190336,168195175,168198852,168199863,168203688,168204371,168211733,168215039,168216767,168218124,168226087,168227894,168244419,168246756,168260282,168262048	167755192,167876195,167952822,167993182,168047549,168062265,168090769,168098127,168118486,168125050,168126966,168162757,168190547,168195295,168199114,168200131,168203832,168204621,168211754,168215272,168216922,168218999,168226263,168228130,168244716,168248371,168260413,168264157	0.571429
fibroblast_of_arm_male_adult_53_years	chr7	40815628	40815653	40815652	+	RAMPAGE_only	7	7	34	1.917568	4.160705	chr7	40810256	40816712	LINE|L1|L1PA16	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	1.000000
fibroblast_of_arm_male_adult_53_years	chr2	186602121	186602145	186602121	+	RAMPAGE_only	5	5	13	0.733188	3.085055	chr2	186602116	186602175	LINE|RTE-BovB|MamRTE1	-	chr2	186600204	186677441	ITGAV|ENST00000433736.6	+	186600204,186602020,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186600381,186602151,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186677441	1.000000
fibroblast_of_arm_male_adult_53_years	chr18	46087042	46087065	46087042	-	High_confidence	3	3	9	0.507591	2.725481	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.888889
fibroblast_of_arm_male_adult_53_years	chr10	52455287	52455295	52455292	-	High_confidence	6	6	20	1.127981	3.536887	chr10	52454703	52455679	LINE|L2|L2a	+	chr10	52450873	52455272	LNCAROD|ENST00000435813.6	-	52450873,52454585,52455105	52451517,52454749,52455272	0.550000
fibroblast_of_arm_male_adult_53_years	chr19	11539683	11539702	11539698	+	High_confidence	4	5	19	1.071582	3.016876	chr19	11539660	11539789	SINE|MIR|MIRb	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	0.947368
fibroblast_of_arm_male_adult_53_years	chr1	19344388	19344429	19344388	-	RAMPAGE_only	8	8	18	1.015183	3.086049	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
fibroblast_of_arm_male_adult_53_years	chr5	128082243	128082265	128082243	-	High_confidence	5	5	22	1.240779	3.845351	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127965887	128082974	LINC01184|ENST00000501652.5	-	127965887,128061143,128081972,128082734	127966928,128061244,128082191,128082974	0.545455
fibroblast_of_arm_male_adult_53_years	chr2	203533423	203533451	203533429	-	High_confidence	16	17	90	5.075915	5.310312	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.788889
fibroblast_of_arm_male_adult_53_years	chr8	30812364	30812454	30812453	-	High_confidence	8	8	45	2.537957	4.441043	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785613	30812620	MSTRG.34493.3	-	30785613,30791196,30793916,30794191,30797580,30799545,30812319,30812499	30786307,30791315,30794078,30794281,30797754,30799755,30812455,30812620	0.955556
fibroblast_of_arm_male_adult_53_years	chr2	218287266	218287280	218287279	-	High_confidence	10	13	26	1.466375	3.463465	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.884615
fibroblast_of_arm_male_adult_53_years	chr10	93431448	93431476	93431475	-	RAMPAGE_only	5	5	16	0.902385	3.272906	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.687500
fibroblast_of_arm_male_adult_53_years	chr14	51599923	51600012	51599923	-	High_confidence	15	18	87	4.906717	4.702095	chr14	51599913	51599958	SINE|MIR|MIR3	+	chr14	51546628	51599920	FRMD6-AS2|ENST00000557625.1	-	51546628,51547706,51584165,51599826	51546820,51547883,51584283,51599920	0.885057
fibroblast_of_arm_male_adult_53_years	chr6	26474335	26474346	26474345	+	RAMPAGE_only	14	21	34	1.917568	3.913910	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.823529
fibroblast_of_arm_male_adult_53_years	chr22	37849317	37849333	37849317	-	High_confidence	25	26	98	5.527107	4.917701	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.979592
fibroblast_of_arm_male_adult_53_years	chr19	48868595	48868631	48868613	-	High_confidence	316	367	1425	80.368647	7.388285	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.993684
fibroblast_of_arm_male_adult_53_years	chr14	34650843	34650862	34650843	-	RAMPAGE_only	4	4	18	1.015183	3.016876	chr14	34650761	34650903	LTR|ERVL-MaLR|MLT1J2	+	chr14	34562408	34630183	SNX6|ENST00000362031.8	-	34562408,34567685,34567853,34575755,34581560,34586229,34593044,34597549,34603347,34605595,34608029,34609637,34629906,34630110	34563175,34567771,34568013,34575842,34581600,34586305,34593150,34597645,34603471,34605717,34608140,34609742,34629954,34630183	0.888889
fibroblast_of_arm_male_adult_53_years	chr5	34918052	34918053	34918052	-	High_confidence	7	7	7	0.394793	2.807355	chr5	34918029	34918308	SINE|Alu|AluJo	+	chr5	34908171	34918989	RAD1|ENST00000341754.8	-	34908171,34909257,34911553,34913469,34914694,34915415,34918051,34918231,34918521	34908948,34909356,34911812,34913578,34914961,34915626,34918136,34918297,34918989	1.000000
fibroblast_of_arm_male_adult_53_years	chr8	39083031	39083070	39083065	+	RAMPAGE_only	5	5	20	1.127981	3.246439	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.750000
fibroblast_of_arm_male_adult_53_years	chr1	16981087	16981187	16981087	-	High_confidence	122	175	988	55.722262	5.415233	chr1	16980989	16981106	LINE|L2|L2b	+	chr1	16974501	16980835	MFAP2|ENST00000375535.3	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16980586	16975023,16975342,16975730,16976545,16976794,16976923,16977198,16978314,16980835	0.966599
fibroblast_of_arm_male_adult_53_years	chr8	143018381	143018447	143018394	-	High_confidence	8	8	48	2.707154	4.628849	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.625000
fibroblast_of_arm_male_adult_53_years	chr1	235589049	235589089	235589088	-	High_confidence	8	8	31	1.748371	3.937752	chr1	235589032	235589593	LTR|ERVL|LTR18B	+	chr1	235551753	235588959	GNG4|ENST00000484517.2	-	235551753,235583739,235588868	235552237,235583848,235588959	0.806452
fibroblast_of_arm_male_adult_53_years	chr9	39810033	39810118	39810033	-	High_confidence	15	15	46	2.594356	4.262344	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807380	39810058	GLIDR|ENST00000618092.2	-	39807380,39809730	39809633,39810058	0.521739
fibroblast_of_arm_male_adult_53_years	chr5	172954191	172954233	172954206	+	RAMPAGE_only	13	16	52	2.932751	4.441133	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172958728	172969716	RPL26L1|ENST00000519974.5	+	172958728,172959864,172968458,172969412	172958801,172960041,172968599,172969716	1.000000
fibroblast_of_arm_male_adult_53_years	chr6	2999185	2999186	2999185	-	High_confidence	10	11	15	0.845986	2.549523	chr6	2999098	2999242	LINE|L1|L1MD2	-	chr6	2989725	2999134	AL133351.1|ENST00000429319.1	-	2989725,2999012	2990011,2999134	0.866667
fibroblast_of_arm_male_adult_53_years	chr19	3062982	3062986	3062985	-	High_confidence	7	7	14	0.789587	2.549523	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	1.000000
fibroblast_of_arm_male_adult_53_years	chr4	118835953	118835954	118835953	-	High_confidence	6	6	8	0.451192	2.750000	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.875000
fibroblast_of_arm_male_adult_53_years	chr3	139344535	139344548	139344547	+	High_confidence	740	745	1649	93.002034	5.918056	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.953305
fibroblast_of_arm_male_adult_53_years	chr2	3536480	3536514	3536480	-	High_confidence	3	3	15	0.845986	3.139572	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.866667
fibroblast_of_arm_male_adult_53_years	chr14	102240550	102240615	102240612	-	High_confidence	45	60	188	10.603021	5.264120	chr14	102240323	102240748	LTR|ERV1|HERVH-int	+	chr14	102228838	102240611	MOK|ENST00000524370.5	-	102228838,102229456,102232534,102233687,102240451	102229366,102229657,102232708,102233789,102240611	0.904255
fibroblast_of_arm_male_adult_53_years	chr5	23951339	23951384	23951347	+	High_confidence	6	6	40	2.255962	4.523986	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.750000
fibroblast_of_arm_male_adult_53_years	chr2	215831582	215831587	215831586	-	High_confidence	3	4	8	0.451192	2.521641	chr2	215831449	215831546	DNA|hAT-Charlie|Charlie10b	-	chr2	215641767	215831590	LINC00607|ENST00000451392.5	-	215641767,215743813,215747303,215750242,215831428	215641819,215743914,215747394,215750417,215831590	0.625000
fibroblast_of_arm_male_adult_53_years	chr11	9775633	9775666	9775665	+	High_confidence	17	27	75	4.229929	5.167861	chr11	9775466	9776058	LTR|ERVL|MER21C	+	chr11	9775730	9808379	SBF2-AS1|ENST00000534671.1	+	9775730,9780375,9807847	9775765,9780575,9808379	0.853333
fibroblast_of_arm_male_adult_53_years	chr9	39809852	39809868	39809858	-	High_confidence	6	7	17	0.958784	2.651794	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	1.000000
fibroblast_of_arm_male_adult_53_years	chr4	47855427	47855441	47855440	-	RAMPAGE_only	4	4	12	0.676789	3.084963	chr4	47855405	47855475	LTR|ERVL-MaLR|MLT1J	+	chr4	47847239	47878704	NFXL1|ENST00000502448.5	-	47847239,47851094,47851855,47855058,47862845,47875126,47878524	47848336,47851148,47851942,47855163,47862915,47875293,47878704	1.000000
fibroblast_of_arm_male_adult_53_years	chr1	222064772	222064773	222064772	-	High_confidence	397	432	433	24.420789	4.615152	chr1	222064600	222064953	LTR|ERVL-MaLR|THE1B	-	chr1	222041704	222064763	LINC01705|ENST00000438158.1	-	222041704,222058413,222064684	222041922,222058678,222064763	0.969977
fibroblast_of_arm_male_adult_53_years	chr22	27226793	27226797	27226793	-	RAMPAGE_only	5	7	13	0.733188	3.084963	chr22	27226424	27226975	LTR|ERVL-MaLR|MLT1F2	-	chr22	27221348	27224727	LINC01638|ENST00000444114.5	-	27221348,27224229,27224522	27221701,27224308,27224727	0.615385
fibroblast_of_arm_male_adult_53_years	chr4	77011276	77011285	77011281	+	RAMPAGE_only	3	4	12	0.676789	2.855389	chr4	77011235	77011415	DNA|hAT-Charlie|MER117	+	chr4	77009779	77015017	SEPT11|ENST00000504460.1	+	77009779,77011734,77014855	77009987,77011921,77015017	0.500000
fibroblast_of_arm_male_adult_53_years	chr17	5419862	5419882	5419881	+	High_confidence	3	3	10	0.563991	3.121928	chr17	5419928	5419992	LINE|L2|L2	+	chr17	5419887	5432608	RPAIN|ENST00000327154.10	+	5419887,5421295,5422768,5425970,5432541	5420291,5421466,5422829,5426082,5432608	1.000000
fibroblast_of_arm_male_adult_53_years	chr22	50785210	50785227	50785226	+	RAMPAGE_only	5	5	17	0.958784	2.984234	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	1.000000
fibroblast_of_arm_male_adult_53_years	chr3	80770347	80770393	80770392	-	High_confidence	24	24	162	9.136646	5.661115	chr3	80769735	80770387	LTR|ERV1|LTR1A1	-	chr3	80761449	80770013	MSTRG.25175.2	-	80761449,80769758	80761573,80770013	0.512346
fibroblast_of_arm_male_adult_53_years	chr19	16102231	16102554	16102303	+	RAMPAGE_only	661	672	3163	178.390196	5.102446	chr19	16102068	16102357	SINE|Alu|AluSz	+	chr19	16088710	16102946	TPM4|ENST00000591645.2	+	16088710,16089044,16093535,16093683,16101263	16088849,16089120,16093598,16093753,16102946	0.996522
fibroblast_of_arm_male_adult_53_years	chr1	176241621	176241653	176241652	+	RAMPAGE_only	9	9	22	1.240779	4.095795	chr1	176241083	176241796	DNA|TcMar-Tigger|MER44D	-	chr1	176463170	176691204	PAPPA2|ENST00000367661.7	+	176463170,176555406,176594523,176670969,176690136	176463418,176557241,176595595,176671115,176691204	0.590909
fibroblast_of_arm_male_adult_53_years	chr1	240285252	240285314	240285293	+	High_confidence	113	132	379	21.375240	6.727624	chr1	240285122	240285870	LINE|L2|L2c	-	chr1	240285264	240475183	MSTRG.3491.7	+	240285264,240294821,240329075,240329338,240330602,240333886,240334108,240355815,240392510,240438060,240472371,240474127	240285523,240294883,240329167,240329468,240330749,240333946,240334229,240355908,240392562,240438210,240472453,240475183	0.926121
fibroblast_of_arm_male_adult_53_years	chr8	68760112	68760122	68760121	+	RAMPAGE_only	7	8	18	1.015183	3.419382	chr8	68759841	68760175	LINE|L2|L2c	-	chr8	68437912	68819022	C8orf34|ENST00000337103.8	+	68437912,68446328,68468691,68488022,68521798,68532982,68640375,68708993,68721360,68776398,68787442,68815885,68818238	68439646,68446460,68468820,68488051,68521971,68533149,68640511,68709079,68721437,68776449,68787536,68815945,68819022	1.000000
fibroblast_of_arm_male_adult_53_years	chr19	12800915	12800947	12800915	-	High_confidence	5	5	19	1.071582	2.905765	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.947368
fibroblast_of_arm_male_adult_53_years	chr1	1575374	1575378	1575374	-	High_confidence	5	7	10	0.563991	2.646439	chr1	1575374	1575512	LINE|L2|L2	-	chr1	1541673	1575345	MSTRG.143.2	-	1541673,1543868,1544862,1564772,1575304	1542167,1543987,1545002,1564916,1575345	0.600000
fibroblast_of_arm_male_adult_53_years	chr5	77491284	77491291	77491290	-	High_confidence	14	16	25	1.409976	3.005123	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77453865	77491285	WDR41|ENST00000504895.5	-	77453865,77459061,77463094,77464760,77489456,77491192	77453928,77459124,77463226,77464809,77489572,77491285	0.680000
fibroblast_of_arm_male_adult_53_years	chr3	29280838	29280900	29280894	-	High_confidence	6	10	38	2.143164	4.418723	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.710526
fibroblast_of_arm_male_adult_53_years	chr2	227534906	227534933	227534916	+	RAMPAGE_only	3	3	11	0.620390	3.121928	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.909091
fibroblast_of_arm_male_adult_53_years	chr13	45206631	45206634	45206633	+	High_confidence	68	94	124	6.993482	4.904517	chr13	45206646	45206717	SINE|MIR|MIRb	+	chr13	45206354	45267333	GTF2F2|ENST00000494087.5	+	45206354,45252870,45267232	45207505,45252970,45267333	0.709677
fibroblast_of_arm_male_adult_53_years	chr12	93773408	93773412	93773408	+	RAMPAGE_only	46	51	88	4.963116	4.530306	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.920455
fibroblast_of_arm_male_adult_53_years	chr6	127330813	127330860	127330853	-	High_confidence	3	3	12	0.676789	3.277613	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.666667
fibroblast_of_arm_male_adult_53_years	chr15	98890528	98890529	98890528	+	High_confidence	11	11	11	0.620390	2.663533	chr15	98890160	98890677	LTR|ERV1|MER41A	+	chr15	98890541	98896886	IGF1R|ENST00000560432.1	+	98890541,98891324,98896756	98890755,98891637,98896886	1.000000
fibroblast_of_arm_male_adult_53_years	chr12	6582139	6582169	6582139	-	High_confidence	2	3	12	0.676789	3.277613	chr12	6581880	6582102	SINE|Alu|AluSx1	-	chr12	6570190	6581343	CHD4|ENST00000644652.1	-	6570190,6570868,6573073,6577784,6578028,6578408,6578845,6580581,6581043,6581290	6570693,6571032,6573269,6577917,6578137,6578546,6578917,6580699,6581173,6581343	0.666667
fibroblast_of_arm_male_adult_53_years	chr12	643627	643636	643627	-	High_confidence	20	30	55	3.101948	4.340006	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.981818
fibroblast_of_arm_male_adult_53_years	chr10	45000503	45000515	45000503	+	High_confidence	4	4	10	0.563991	3.121928	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
fibroblast_of_arm_male_adult_53_years	chr1	112850264	112850289	112850288	+	High_confidence	6	6	29	1.635572	3.279552	chr1	112850184	112850373	SINE|MIR|MIR	+	chr1	112850075	112877867	AL390729.1|ENST00000422022.1	+	112850075,112877729	112850427,112877867	1.000000
fibroblast_of_arm_male_adult_53_years	chr1	16017955	16017956	16017955	-	High_confidence	13	14	18	1.015183	2.822182	chr1	16017886	16017984	LINE|CR1|L3	+	chr1	16015498	16018005	HSPB7|ENST00000406363.2	-	16015498,16017073,16017764	16015759,16017219,16018005	0.722222
fibroblast_of_arm_male_adult_53_years	chr1	246417365	246417413	246417412	-	High_confidence	155	155	229	12.915383	5.665541	chr1	246417275	246418033	LTR|ERV1|LTR8B	-	chr1	245749339	246417412	SMYD3|NM_022743.2	-	245749339,245764040,245858495,245863798,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246417295	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246417412	0.895197
fibroblast_of_arm_male_adult_53_years	chr1	67791731	67791754	67791731	-	RAMPAGE_only	15	16	54	3.045549	4.426152	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701465	67833467	GNG12|ENST00000370982.3	-	67701465,67707593,67777457,67833343	67705576,67707712,67777507,67833467	0.962963
fibroblast_of_arm_male_adult_53_years	chr15	82546441	82546442	82546441	-	RAMPAGE_only	8	8	8	0.451192	2.750000	chr15	82546117	82546394	SINE|Alu|AluSx1	-	chr15	82536749	82540564	RPS17|ENST00000330244.11	-	82536749,82538305,82538879,82539980,82540425	82536881,82538371,82538985,82540132,82540564	1.000000
fibroblast_of_arm_male_adult_53_years	chr1	245860587	245860599	245860593	-	High_confidence	16	16	55	3.101948	4.695297	chr1	245860451	245860544	DNA|hAT-Tip100|UCON132b	-	chr1	245749350	245860608	MSTRG.3582.6	-	245749350,245764040,245858495,245860442	245749664,245764149,245858701,245860608	0.945455
fibroblast_of_arm_male_adult_53_years	chr14	58424075	58424078	58424075	-	High_confidence	4	4	8	0.451192	2.521641	chr14	58423952	58424081	LINE|CR1|L3	-	chr14	58408873	58423828	MSTRG.10777.6	-	58408873,58410842,58411906,58423827	58409168,58410938,58411971,58423828	0.750000
fibroblast_of_arm_male_adult_53_years	chr7	43694081	43694123	43694122	-	RAMPAGE_only	23	23	114	6.429492	4.780486	chr7	43693084	43695551	LINE|L2|L2a	+	chr7	43639256	43664948	MSTRG.32683.8	-	43639256,43640572,43645250,43647534,43648599,43664896	43639681,43640649,43645399,43647634,43648652,43664948	0.894737
fibroblast_of_arm_male_adult_53_years	chr8	73585887	73585888	73585887	-	High_confidence	39	42	45	2.537957	4.091622	chr8	73585756	73586094	LTR|ERVL-MaLR|THE1C	+	chr8	73421326	73585944	MSTRG.34884.6	-	73421326,73422613,73552011,73582769,73585794	73421465,73422702,73552319,73582830,73585944	0.933333
fibroblast_of_arm_male_adult_53_years	chr2	121902452	121902490	121902489	+	High_confidence	9	18	32	1.804770	4.476410	chr2	121902488	121902606	LINE|L2|L2a	-	chr2	121902499	122042513	MSTRG.20822.1	+	121902499,121944333,122040190,122041032	121902989,121944447,122040306,122042513	0.875000
fibroblast_of_arm_male_adult_53_years	chr14	39265964	39265971	39265964	+	High_confidence	5	5	12	0.676789	2.855389	chr14	39265902	39265967	LINE|RTE-BovB|MamRTE1	+	chr14	39265967	39350423	MIA2|ENST00000396165.8	+	39265967,39276933,39279336,39279448,39291018,39293270,39293999,39294924,39299863,39302128,39303477,39304290,39308448,39313339,39314738,39315682,39317943,39319208,39320927,39326863,39345903,39347712,39348742,39350097	39266527,39277065,39279358,39279537,39291096,39293381,39294071,39295029,39299986,39302249,39303524,39304381,39308587,39313441,39314799,39315718,39318011,39319291,39321056,39327022,39346026,39347771,39348977,39350423	1.000000
fibroblast_of_arm_male_adult_53_years	chr3	191235728	191235731	191235730	-	RAMPAGE_only	256	363	508	28.650718	5.365359	chr3	191235058	191235997	LTR|ERV1|LTR78	-	chr3	191213290	191234605	OSTN-AS1|NR_133663.1	-	191213290,191217069,191218815,191228714,191229765,191234571	191213340,191217179,191218936,191228782,191229897,191234605	0.862205
fibroblast_of_arm_male_adult_53_years	chr14	51729116	51729155	51729154	+	RAMPAGE_only	18	20	44	2.481558	4.390805	chr14	51729121	51729296	DNA|hAT-Charlie|MER5B	+	chr14	51717282	51730727	FRMD6|NM_001267047.1	+	51717282,51720054,51721948,51725778,51727744	51717348,51720390,51722080,51725870,51730727	1.000000
fibroblast_of_arm_male_adult_53_years	chr4	128570466	128570493	128570487	-	High_confidence	14	14	41	2.312361	4.534184	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.975610
fibroblast_of_arm_male_adult_53_years	chr19	49086525	49086547	49086546	+	RAMPAGE_only	5	5	9	0.507591	2.947703	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49085494	49108605	SNRNP70|ENST00000595231.5	+	49085494,49086404,49090290,49090465,49098426,49098641,49101389,49102113,49104633,49107624,49107821	49085636,49086561,49090353,49090520,49098491,49098704,49101471,49102185,49104735,49107712,49108605	0.888889
fibroblast_of_arm_male_adult_53_years	chr9	127522793	127522833	127522802	-	RAMPAGE_only	4	4	19	1.071582	3.058814	chr9	127522529	127523072	LINE|L2|L2a	+	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	0.947368
fibroblast_of_arm_male_adult_53_years	chr7	101299612	101299643	101299642	+	High_confidence	12	12	21	1.184380	3.784942	chr7	101299646	101301210	LINE|L1|L1M2	+	chr7	101299577	101301346	LNCPRESS1|ENST00000429254.2	+	101299577,101300768	101299866,101301346	1.000000
fibroblast_of_arm_male_adult_53_years	chr10	91185472	91185496	91185472	+	RAMPAGE_only	3	3	10	0.563991	2.721928	chr10	91179356	91186029	LINE|L1|L1PA13	-	chr10	91163011	91284331	PCGF5|NM_001257101.1	+	91163011,91222688,91240483,91248504,91248664,91251291,91261325,91264430,91271637,91278268	91163081,91222983,91240580,91248560,91248724,91251440,91261424,91264520,91271697,91284331	1.000000
fibroblast_of_arm_male_adult_53_years	chr3	112649623	112649645	112649642	-	High_confidence	5	9	22	1.240779	3.538311	chr3	112649368	112649995	LINE|L2|L2c	+	chr3	112640765	112649530	CCDC80|ENST00000480275.1	-	112640765,112643261,112649315	112641038,112643457,112649530	0.727273
fibroblast_of_arm_male_adult_53_years	chr4	86780447	86780455	86780447	+	RAMPAGE_only	4	4	12	0.676789	2.855389	chr4	86780459	86780984	LINE|L1|L1ME1	+	chr4	86635251	86815149	PTPN13|ENST00000511467.1	+	86635251,86672364,86686709,86689004,86693586,86701240,86716529,86717023,86722211,86732399,86732591,86734302,86734736,86735593,86741633,86744965,86750469,86751026,86753008,86758259,86758677,86758941,86762726,86764592,86765394,86766431,86767816,86769768,86770100,86771170,86772777,86774372,86775170,86775441,86780401,86782200,86784464,86785230,86785847,86796873,86799100,86803708,86805278,86807559,86809768,86811045,86814455	86635371,86672543,86686775,86689190,86693674,86701801,86716625,86717117,86722434,86732474,86732766,86734456,86734875,86735746,86741816,86745128,86750887,86751124,86753065,86758349,86758785,86759073,86763190,86764739,86765488,86766517,86767976,86769983,86770199,86771535,86772958,86774531,86775342,86775652,86780472,86782262,86784558,86785368,86785936,86796929,86799204,86803857,86805369,86807897,86809984,86811108,86815149	0.916667
fibroblast_of_arm_male_adult_53_years	chr2	55875284	55875306	55875305	-	RAMPAGE_only	5	9	19	1.071582	3.080501	chr2	55875257	55875330	SINE|MIR|MIR3	+	chr2	55866906	55917780	EFEMP1|ENST00000634374.1	-	55866906,55870719,55870999,55874945,55881611,55917664	55867234,55870915,55871123,55875065,55881734,55917780	0.947368
fibroblast_of_arm_male_adult_53_years	chr2	109546070	109546101	109546070	-	RAMPAGE_only	2	2	8	0.451192	2.521641	chr2	109545815	109546035	LINE|L2|L2a	-	chr2	109542796	109613657	SEPT10|NM_001321515.1	-	109542796,109546049,109553086,109564365,109565762,109567814,109574580,109585125,109585720,109613111	109544324,109546237,109553219,109564534,109565859,109567976,109574767,109585321,109585838,109613657	0.875000
fibroblast_of_arm_male_adult_53_years	chr5	70401423	70401470	70401423	+	RAMPAGE_only	6	8	33	1.861169	4.131300	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.878788
fibroblast_of_arm_male_adult_53_years	chr7	134432378	134432445	134432394	-	High_confidence	19	21	126	7.106280	4.753174	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.761905
fibroblast_of_arm_male_adult_53_years	chr19	5680196	5680253	5680234	-	High_confidence	12	15	70	3.947934	4.847139	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.914286
fibroblast_of_arm_male_adult_53_years	chr1	25820171	25820216	25820192	+	High_confidence	4	4	20	1.127981	3.646439	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.550000
fibroblast_of_arm_male_adult_53_years	chr7	112995629	112995673	112995657	-	High_confidence	13	13	59	3.327544	5.119600	chr7	112995411	112995725	LINE|L2|L2	+	chr7	112954634	112995643	HRAT17|NR_110162.1	-	112954634,112956521,112973604,112980045,112986535,112995567	112954768,112956702,112973672,112980164,112986664,112995643	0.694915
fibroblast_of_arm_male_adult_53_years	chr1	165897927	165897979	165897942	+	High_confidence	7	7	35	1.973967	4.300153	chr1	165897854	165897970	SINE|MIR|MIR3	+	chr1	165897978	165908109	UCK2|ENST00000463772.5	+	165897978,165903181,165905920,165907683	165898004,165903279,165905969,165908109	1.000000
fibroblast_of_arm_male_adult_53_years	chr7	7157347	7157404	7157370	+	RAMPAGE_only	21	22	64	3.609539	4.923755	chr7	7157366	7157507	LINE|L1|L1M8	-	chr7	7182614	7248647	C1GALT1|ENST00000436587.6	+	7182614,7234302,7238254,7243523	7182820,7234539,7238922,7248647	0.796875
fibroblast_of_arm_male_adult_53_years	chrX	97310606	97310613	97310611	+	RAMPAGE_only	3	7	10	0.563991	3.321928	chrX	97310220	97310731	LINE|L2|L2a	-	chrX	96685016	97469765	DIAPH2|ENST00000373054.5	+	96685016,96735757,96738585,96758153,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348117,97383908,97429649,97469693	96685190,96735790,96738762,96758258,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247841,97348280,97384044,97429745,97469765	1.000000
fibroblast_of_arm_male_adult_53_years	chr17	34255590	34255591	34255590	+	High_confidence	7	7	10	0.563991	2.725481	chr17	34255527	34255643	SINE|MIR|MIRc	-	chr17	34255284	34257203	CCL2|ENST00000225831.4	+	34255284,34256221,34256721	34255425,34256339,34257203	0.900000
fibroblast_of_arm_male_adult_53_years	chr10	32446977	32447012	32446977	+	High_confidence	3	4	10	0.563991	2.646439	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	1.000000
fibroblast_of_arm_male_adult_53_years	chr10	4678146	4678187	4678146	-	High_confidence	5	5	14	0.789587	3.324863	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.857143
fibroblast_of_arm_male_adult_53_years	chr7	21851148	21851175	21851168	+	High_confidence	3	3	10	0.563991	2.641604	chr7	21851065	21851438	LTR|ERVL-MaLR|THE1C	+	chr7	21851161	21861970	DNAH11|ENST00000607413.5	+	21851161,21852466,21854314,21861852	21851320,21852631,21854455,21861970	0.900000
fibroblast_of_arm_male_adult_53_years	chr1	97904675	97904679	97904675	-	RAMPAGE_only	6	6	12	0.676789	2.732159	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.833333
fibroblast_of_arm_male_adult_53_years	chr7	154928481	154928504	154928503	+	High_confidence	10	10	16	0.902385	3.750000	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.875000
fibroblast_of_arm_male_adult_53_years	chr20	47369124	47369125	47369124	-	RAMPAGE_only	6	7	8	0.451192	2.521641	chr20	47368952	47369324	LINE|L2|L2c	+	chr20	47209213	47356889	ZMYND8|NM_001281773.2	-	47209213,47212641,47220257,47221313,47224316,47227202,47229725,47236325,47238757,47246007,47249286,47262287,47276313,47282101,47283570,47287228,47290186,47291795,47294665,47298728,47310055,47347855,47355449,47356656	47210897,47212725,47220324,47221474,47224556,47227281,47229806,47236516,47239138,47246517,47249439,47262428,47276795,47282217,47283648,47287284,47290274,47291888,47294779,47298947,47310204,47347926,47355520,47356889	0.875000
fibroblast_of_arm_male_adult_53_years	chr6	131901896	131901897	131901896	+	High_confidence	7	7	8	0.451192	2.807355	chr6	131901549	131902003	LTR|ERV1|LTR7	+	chr6	131901962	131920565	AL117378.1|ENST00000454596.1	+	131901962,131918449	131902151,131920565	0.750000
fibroblast_of_arm_male_adult_53_years	chr9	20658568	20658607	20658568	+	High_confidence	14	14	59	3.327544	4.733924	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658320	20995948	MSTRG.35944.2	+	20658320,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	0.576271
fibroblast_of_arm_male_adult_53_years	chr2	8985934	8985950	8985934	-	RAMPAGE_only	6	6	13	0.733188	3.026987	chr2	8985892	8986293	LINE|L1|L1MC3	+	chr2	8860694	9003658	MBOAT2|ENST00000486484.5	-	8860694,8862270,8862589,8864169,8868445,8873107,8877029,8882510,8888017,8908620,8943186,8958496,9003539	8860764,8862322,8862722,8864234,8868549,8873300,8877213,8882565,8888073,8908716,8943264,8958642,9003658	1.000000
fibroblast_of_arm_male_adult_53_years	chr6	118651542	118651602	118651592	-	High_confidence	14	14	82	4.624722	5.438234	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118632305	118651633	MSTRG.31672.11	-	118632305,118651196,118651513	118632611,118651444,118651633	0.731707
fibroblast_of_arm_male_adult_53_years	chr1	238486003	238486036	238486003	-	High_confidence	13	17	54	3.045549	4.411752	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480440	238486023	LINC01139|ENST00000649681.1	-	238480440	238486023	1.000000
fibroblast_of_arm_male_adult_53_years	chr6	149895954	149895958	149895955	-	High_confidence	6	11	21	1.184380	3.546439	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.952381
fibroblast_of_arm_male_adult_53_years	chr22	50783214	50783215	50783214	+	High_confidence	18	18	23	1.297178	2.783735	chr22	50783102	50783247	SINE|Alu|AluJr	-	chr22	50783253	50799305	RPL23AP82|ENST00000467796.5	+	50783253,50785172,50798654	50783294,50785293,50799305	1.000000
fibroblast_of_arm_male_adult_53_years	chr20	18794065	18794086	18794085	+	High_confidence	6	6	24	1.353577	4.088779	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.958333
fibroblast_of_arm_male_adult_53_years	chr6	133952656	133952678	133952656	+	High_confidence	6	6	10	0.563991	2.725481	chr6	133952660	133952828	DNA|hAT-Charlie|Charlie2a	+	chr6	133952169	133987500	TBPL1|NM_001253676.1	+	133952169,133980081,133982567,133982816,133984375,133984576,133986960	133952730,133980260,133982650,133982880,133984479,133984671,133987500	0.900000
fibroblast_of_arm_male_adult_53_years	chr11	123060156	123060256	123060174	-	High_confidence	21	21	290	16.355725	5.104486	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.589655
fibroblast_of_arm_male_adult_53_years	chr16	11587465	11587475	11587468	-	High_confidence	10	11	36	2.030366	3.647160	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.972222
fibroblast_of_arm_male_adult_53_years	chr13	113187420	113187472	113187444	-	High_confidence	19	19	67	3.778736	4.706808	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.970149
fibroblast_of_arm_male_adult_53_years	chr8	73585989	73586005	73586004	-	High_confidence	8	8	16	0.902385	2.739572	chr8	73585756	73586094	LTR|ERVL-MaLR|THE1C	+	chr8	73421326	73585944	MSTRG.34884.6	-	73421326,73422613,73552011,73582769,73585794	73421465,73422702,73552319,73582830,73585944	0.875000
fibroblast_of_arm_male_adult_53_years	chr11	307580	307581	307580	-	RAMPAGE_only	7	7	7	0.394793	2.521641	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	0.571429
fibroblast_of_arm_male_adult_53_years	chr4	28376599	28376606	28376599	-	High_confidence	4	4	10	0.563991	2.641604	chr4	28376326	28376771	LTR|ERVL|MLT2A2	-	chr4	28315804	28376554	MSTRG.26901.1	-	28315804,28370699,28376401	28317538,28370799,28376554	0.600000
fibroblast_of_arm_male_adult_53_years	chr16	65053822	65053880	65053822	-	RAMPAGE_only	5	7	28	1.579173	2.994108	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	1.000000
fibroblast_of_arm_male_adult_53_years	chr12	105332497	105332536	105332515	+	RAMPAGE_only	7	8	41	2.312361	4.110737	chr12	105332447	105332765	SINE|Alu|AluSq2	+	chr12	105330867	105370680	C12orf75|ENST00000549934.2	+	105330867,105348601,105365806,105366616,105367476,105370633	105330937,105348626,105365842,105366696,105367509,105370680	0.829268
fibroblast_of_arm_male_adult_53_years	chr15	96285465	96285504	96285489	-	RAMPAGE_only	7	11	40	2.255962	3.164315	chr15	96285441	96285601	LINE|RTE-BovB|MamRTE1	+	chr15	96266385	96282971	NR2F2-AS1|ENST00000561402.5	-	96266385,96269847,96271702,96282831	96266589,96269996,96271798,96282971	0.850000
fibroblast_of_arm_male_adult_53_years	chr5	122074051	122074154	122074134	-	RAMPAGE_only	16	18	143	8.065064	5.354376	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065943	122076083	LOX|ENST00000505593.5	-	122065943,122070052,122070493,122074012,122075403,122076017	122066749,122070168,122070589,122074169,122075541,122076083	0.937063
fibroblast_of_arm_male_adult_53_years	chr2	101281862	101281889	101281862	-	RAMPAGE_only	5	5	14	0.789587	3.039149	chr2	101281489	101281823	SINE|Alu|AluJo	-	chr2	101276090	101308696	RNF149|ENST00000295317.3	-	101276090,101281858,101286080,101288972,101294013,101294930,101308128	101277281,101282057,101286177,101289055,101294082,101295181,101308696	1.000000
fibroblast_of_arm_male_adult_53_years	chr1	39026182	39026207	39026206	+	High_confidence	4	6	14	0.789587	3.378783	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
fibroblast_of_arm_male_adult_53_years	chr19	46180834	46180868	46180867	-	High_confidence	10	11	24	1.353577	3.434561	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46163892	46180647	AC006262.2|ENST00000599127.1	-	46163892,46164577,46173933,46179485,46180604	46164216,46164651,46174052,46179537,46180647	0.833333
fibroblast_of_arm_male_adult_53_years	chr17	59619874	59619923	59619894	+	High_confidence	460	657	3076	173.483479	6.063570	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.960663
fibroblast_of_arm_male_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	618	642	3796	214.090795	7.303794	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.934932
fibroblast_of_arm_male_adult_53_years	chr17	41871799	41871820	41871819	-	RAMPAGE_only	3	4	8	0.451192	3.000000	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.875000
fibroblast_of_arm_male_adult_53_years	chr17	41871691	41871715	41871691	-	RAMPAGE_only	3	3	12	0.676789	2.845351	chr17	41871351	41871654	SINE|Alu|AluSp	-	chr17	41866916	41918962	ACLY|ENST00000590151.5	-	41866916,41868708,41869042,41869473,41871688,41872031,41873810,41878102,41878796,41883121,41884192,41886111,41887598,41892278,41893032,41896619,41897748,41898630,41901695,41904728,41905521,41906527,41907441,41908988,41909509,41910221,41912419,41913714,41918879	41867904,41868785,41869125,41869587,41871832,41872182,41873965,41878196,41878924,41883232,41884274,41886308,41887703,41892447,41893174,41896649,41897839,41898785,41901813,41904790,41905658,41906646,41907572,41909068,41909700,41910284,41912542,41913900,41918962	0.916667
fibroblast_of_arm_male_adult_53_years	chr22	27226711	27226764	27226763	-	RAMPAGE_only	9	14	58	3.271145	4.441792	chr22	27226424	27226975	LTR|ERVL-MaLR|MLT1F2	-	chr22	27221348	27224727	LINC01638|ENST00000444114.5	-	27221348,27224229,27224522	27221701,27224308,27224727	0.672414
fibroblast_of_arm_male_adult_53_years	chr12	108630674	108630677	108630674	-	High_confidence	10	10	17	0.958784	2.578552	chr12	108630567	108630719	SINE|MIR|MIRc	+	chr12	108623238	108630658	MSTRG.8943.4	-	108623238,108630639	108624312,108630658	1.000000
fibroblast_of_arm_male_adult_53_years	chr6	57961647	57961653	57961649	+	High_confidence	4	7	12	0.676789	3.084963	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961437	57973690	AL445250.1|ENST00000641671.1	+	57961437,57962180,57965516,57971594,57972093	57961742,57962248,57965743,57971656,57973690	0.500000
fibroblast_of_arm_male_adult_53_years	chr16	14511345	14511354	14511353	-	RAMPAGE_only	5	5	12	0.676789	2.855389	chr16	14511277	14511448	SINE|tRNA-RTE|MamSINE1	+	chr16	14446956	14501689	PARN|ENST00000564882.5	-	14446956,14482637,14501552	14447081,14482827,14501689	0.500000
fibroblast_of_arm_male_adult_53_years	chr11	3380960	3380961	3380960	+	High_confidence	38	39	41	2.312361	4.589518	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.585366
fibroblast_of_arm_male_adult_53_years	chr15	39747442	39747443	39747442	-	RAMPAGE_only	7	7	9	0.507591	3.000000	chr15	39747429	39747633	LINE|L1|L1M6	-	chr15	39600213	39763851	MSTRG.11924.8	-	39600213,39600844,39617734,39713443,39726588,39738090,39739664,39741804,39763820	39600269,39600926,39618245,39713581,39726747,39738201,39739789,39741900,39763851	0.777778
fibroblast_of_arm_male_adult_53_years	chr8	144427274	144427275	144427274	-	High_confidence	14	14	15	0.845986	2.610577	chr8	144427020	144427326	SINE|Alu|AluSx	+	chr8	144424964	144427294	VPS28|ENST00000531924.1	-	144424964,144425682,144426025,144426908	144425000,144425772,144426208,144427294	0.933333
fibroblast_of_arm_male_adult_53_years	chr2	46855841	46855843	46855842	+	High_confidence	7	12	14	0.789587	3.324863	chr2	46855816	46855950	DNA|hAT-Charlie|MER5B	+	chr2	46855687	46858579	LINC01119|ENST00000495449.1	+	46855687,46858079	46855990,46858579	1.000000
fibroblast_of_arm_male_adult_53_years	chr19	9140390	9140428	9140393	+	High_confidence	14	14	71	4.004333	4.926991	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.746479
fibroblast_of_arm_male_adult_53_years	chr12	88419264	88419361	88419264	-	High_confidence	204	224	938	52.902309	7.220250	chr12	88418975	88419670	LINE|L2|L2a	+	chr12	88379308	88419344	MSTRG.8690.2	-	88379308,88385085,88419049	88382574,88385154,88419344	0.866738
fibroblast_of_arm_male_adult_53_years	chrX	115018991	115018992	115018991	-	High_confidence	9	9	13	0.733188	3.188722	chrX	115018951	115019144	SINE|MIR|MIR3	-	chrX	115003974	115018973	IL13RA2|ENST00000371936.5	-	115003974,115005196,115007931,115009520,115010643,115013768,115014420,115015669,115017175,115017552,115018899	115004106,115005315,115008076,115009666,115010828,115013889,115014574,115015821,115017302,115017695,115018973	0.923077
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	23939781	23939826	23939781	+	High_confidence	2	3	14	0.715035	3.664498	chr2	23939827	23940129	SINE|Alu|AluSq2	+	chr2	23940418	24004909	UBXN2A|ENST00000309033.4	+	23940418,23958300,23971275,23976968,23982895,23984672,23999671	23940648,23958355,23971414,23977075,23983033,23984831,24004909	0.642857
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	143281669	143281687	143281686	-	High_confidence	30	32	90	4.596652	5.131783	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143281069	143281665	MINCR|ENST00000524335.1	-	143281069,143281481	143281384,143281665	0.500000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	12927733	12927734	12927733	+	High_confidence	9	9	12	0.612887	2.845351	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.500000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	236691	236722	236698	-	High_confidence	3	4	12	0.612887	2.617492	chr11	236640	236796	SINE|MIR|MIRb	-	chr11	216610	236834	SIRT3|ENST00000529382.5	-	216610,218831,224077,230451,232982,233342,236615	216718,219041,224239,230552,233215,233534,236834	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	116390237	116390290	116390272	+	RAMPAGE_only	3	3	15	0.766109	3.182006	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.800000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	123181172	123181186	123181172	-	RAMPAGE_only	2	2	8	0.408591	2.521641	chr12	123180971	123181130	SINE|MIR|MIRc	-	chr12	123163768	123176716	MPHOSPH9|ENST00000606321.1	-	123163768,123165301,123166654,123176687	123164090,123165477,123166789,123176716	0.875000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	200857733	200857852	200857745	-	High_confidence	4	4	38	1.940809	4.440351	chr2	200857615	200857696	LINE|L1|L1MA8	-	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.842105
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	159428316	159428373	159428356	-	RAMPAGE_only	4	5	28	1.430069	4.310443	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.678571
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	9390499	9390500	9390499	-	RAMPAGE_only	6	6	6	0.306443	2.584963	chr3	9390467	9390637	LINE|L2|L2c	-	chr3	9388848	9397493	THUMPD3-AS1|ENST00000522525.5	-	9388848,9391678,9397423	9390497,9391826,9397493	0.833333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	124171528	124171529	124171528	-	High_confidence	9	9	10	0.510739	2.947703	chr8	124171344	124171724	LTR|ERVL-MaLR|THE1D	-	chr8	124046070	124171522	FER1L6-AS2|NR_103547.1	-	124046070,124047556,124058787,124060167,124171427	124046776,124047693,124058972,124060792,124171522	0.700000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50785228	50785251	50785250	+	RAMPAGE_only	3	3	14	0.715035	3.238901	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.928571
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	128684473	128684493	128684484	-	RAMPAGE_only	6	6	25	1.276848	3.938722	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.760000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	39809856	39809868	39809858	-	High_confidence	12	25	49	2.502621	4.514380	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.673469
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	165655316	165655338	165655316	-	High_confidence	30	32	72	3.677321	4.804024	chr6	165655189	165655800	LINE|L2|L2a	+	chr6	165327288	165655336	PDE10A|ENST00000648917.1	-	165327288,165336122,165339277,165343390,165379193,165388297,165392645,165395180,165396316,165413500,165416188,165418634,165428657,165430286,165431421,165432973,165435236,165448927,165450241,165482314,165543439,165654812	165333127,165336211,165339358,165343502,165379366,165388453,165392796,165395264,165396459,165413687,165416281,165418777,165428709,165430345,165431472,165433129,165435377,165448977,165450362,165482343,165543568,165655336	0.861111
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	171400153	171400198	171400153	+	RAMPAGE_only	3	3	27	1.378996	4.078419	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171407492	171410884	NPM1|ENST00000524204.1	+	171407492,171410526	171407774,171410884	0.518519
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	160199150	160199156	160199150	+	High_confidence	192	202	422	21.553189	4.909823	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.966825
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	7946875	7946898	7946878	+	High_confidence	27	27	88	4.494504	4.819217	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.852273
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	94435421	94435448	94435421	-	RAMPAGE_only	6	6	19	0.970404	3.932138	chr12	94435233	94435447	LTR|ERV1|MER39	+	chr12	94308285	94412595	CEP83|ENST00000397807.6	-	94308285,94309917,94312913,94312930,94331699,94333481,94335588,94367793,94368056,94369921,94375885,94378790,94400849,94403169,94411696,94412317	94308917,94310107,94312929,94313017,94331829,94333639,94335664,94367943,94368201,94370036,94376017,94379042,94400981,94403262,94411847,94412595	0.842105
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	154928503	154928504	154928503	+	High_confidence	12	12	13	0.663961	2.918296	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.923077
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	72363558	72363559	72363558	-	High_confidence	4	4	7	0.357517	2.584963	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.571429
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	143248158	143248159	143248158	+	High_confidence	10	11	15	0.766109	3.323231	chr2	143247953	143248400	LINE|L2|L2a	-	chr2	143247289	143437042	ARHGAP15|ENST00000469117.5	+	143247289,143250510,143435600,143436912	143247404,143250600,143435699,143437042	0.733333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	51403418	51403429	51403428	-	RAMPAGE_only	4	4	14	0.715035	3.026987	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.857143
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	16040778	16040779	16040778	-	High_confidence	6	6	6	0.306443	2.584963	chr17	16040748	16040885	SINE|Alu|FLAM_A	+	chr17	16032432	16040659	NCOR1|ENST00000582565.1	-	16032432,16034764,16039432,16040440	16032483,16034944,16039654,16040659	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	47067498	47067518	47067498	-	High_confidence	68	75	321	16.394724	5.701084	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.909657
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	123061119	123061278	123061277	-	High_confidence	10	10	159	8.120751	5.991935	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.918239
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	41426098	41426142	41426098	+	High_confidence	2	2	11	0.561813	2.550341	chr21	41426026	41426113	DNA|hAT-Charlie|MER5A	-	chr21	41426030	41432147	MX1|ENST00000419044.5	+	41426030,41427205,41427754,41430532,41432049	41426161,41427304,41427866,41430608,41432147	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	135965718	135965773	135965741	+	High_confidence	40	47	469	23.953663	6.324617	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.991471
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	9391827	9391828	9391827	-	High_confidence	8	8	12	0.612887	2.688722	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9389914	9391822	THUMPD3-AS1|ENST00000522221.1	-	9389914,9391426	9390497,9391822	0.500000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	109010931	109010991	109010931	-	RAMPAGE_only	5	5	37	1.889735	4.171861	chr1	109010578	109010881	SINE|Alu|AluY	-	chr1	108970213	109041986	WDR47|ENST00000400794.7	-	108970213,108974535,108981732,108982608,108983281,108986522,108991253,108995579,109002223,109004591,109010915,109013819,109017517,109023354,109041861	108971572,108974754,108981864,108982779,108983451,108986680,108991329,108995837,109002402,109004718,109011718,109013925,109017601,109023521,109041986	0.945946
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	9986881	9986905	9986904	+	High_confidence	4	4	17	0.868256	3.625000	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.764706
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	2205781	2205860	2205850	+	High_confidence	25	26	193	9.857264	5.400778	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.984456
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	14653390	14653391	14653390	-	High_confidence	31	31	31	1.583291	3.263668	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	12069758	12069789	12069758	+	High_confidence	22	23	55	2.809065	5.043682	chr17	12069730	12069890	LINE|CR1|L3	+	chr17	12069656	12125318	MAP2K4|ENST00000581941.5	+	12069656,12081355,12095574,12107789,12110374,12113232,12125293	12069849,12081530,12095694,12107909,12110426,12113360,12125318	0.800000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	44914313	44914322	44914321	+	High_confidence	17	17	27	1.378996	3.559900	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.888889
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	7913221	7913249	7913248	-	RAMPAGE_only	7	8	12	0.612887	3.095795	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.583333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	46530319	46530371	46530325	-	RAMPAGE_only	18	18	69	3.524100	5.590780	chr19	46530185	46530438	LINE|L2|L2b	+	chr19	46481084	46490120	PPP5D1|ENST00000595691.1	-	46481084,46489865	46481440,46490120	0.536232
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	184537549	184537596	184537549	-	High_confidence	6	6	36	1.838661	4.536286	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.638889
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	26399487	26399500	26399487	-	High_confidence	8	8	36	1.838661	4.381580	chr7	26399411	26399720	DNA|hAT-Charlie|MER33	+	chr7	26372018	26399418	LOC105375304|NR_136272.1	-	26372018,26399340	26372568,26399418	0.916667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	134485387	134485388	134485387	-	High_confidence	7	7	7	0.357517	2.807355	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	23939582	23939587	23939586	+	High_confidence	6	6	13	0.663961	3.084963	chr2	23939241	23939827	LTR|ERV1|MER92B	-	chr2	23940418	24004909	UBXN2A|ENST00000309033.4	+	23940418,23958300,23971275,23976968,23982895,23984672,23999671	23940648,23958355,23971414,23977075,23983033,23984831,24004909	0.846154
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	15758206	15758218	15758217	+	High_confidence	3	3	11	0.561813	3.095795	chr1	15758111	15758311	SINE|MIR|MIRb	-	chr1	15758418	15786594	FBLIM1|ENST00000375766.7	+	15758418,15764495,15764963,15767375,15768527,15770408,15774617,15777169,15784547	15758848,15764685,15765233,15767563,15768630,15770578,15774796,15777287,15786594	0.818182
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	100102247	100102260	100102259	+	High_confidence	3	3	8	0.408591	2.521641	chr7	100102098	100102390	SINE|Alu|AluSx1	+	chr7	100102085	100103296	AP4M1|ENST00000495154.1	+	100102085,100102674,100102863,100103227	100102393,100102781,100102960,100103296	0.625000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	95208482	95208483	95208482	+	RAMPAGE_only	9	9	12	0.612887	2.792481	chr1	95208181	95208611	LINE|L1|L1ME3A	+	chr1	95234154	95247225	RWDD3|NM_015485.4	+	95234154,95244210,95246541,95246755	95234315,95244698,95246657,95247225	0.833333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	85378112	85378113	85378112	-	High_confidence	46	50	50	2.553695	4.629275	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.960000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	48637367	48637379	48637367	-	High_confidence	9	9	18	0.919330	3.947703	chr19	48637310	48637367	LINE|L1|X9_LINE	+	chr19	48633085	48637363	DBP|ENST00000601104.1	-	48633085,48635579,48636855	48633655,48635990,48637363	0.777778
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	51814519	51814552	51814551	+	RAMPAGE_only	3	3	13	0.663961	3.418296	chr15	51814446	51814570	LINE|L2|L2c	+	chr15	51751560	51816368	TMOD2|ENST00000249700.8	+	51751560,51766372,51768261,51773711,51776931,51781043,51782720,51798196,51806376,51808419	51751712,51766567,51768418,51773834,51777018,51781174,51782828,51798340,51806521,51816368	0.923077
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	6590246	6590279	6590246	+	High_confidence	6	6	22	1.123626	3.820889	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.954545
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	27599391	27599411	27599391	+	RAMPAGE_only	3	3	9	0.459665	2.750000	chr12	27599105	27599506	LTR|ERVL|MLT2B4	+	chr12	27524255	27695564	PPFIBP1|ENST00000228425.10	+	27524255,27578151,27633361,27634909,27646061,27647728,27650009,27654721,27656615,27658815,27660883,27664361,27667165,27671430,27672426,27673766,27674191,27676427,27677063,27679488,27679932,27681545,27682386,27682614,27687384,27688297,27689014,27691748,27692590,27692795	27524365,27578239,27633460,27635115,27646148,27647842,27650141,27654814,27656730,27658848,27660945,27664446,27667320,27671546,27672483,27673827,27674221,27676599,27677096,27679639,27680061,27681696,27682498,27682703,27687507,27688423,27689203,27691928,27692656,27695564	0.666667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	46759942	46759952	46759942	+	High_confidence	4	5	10	0.510739	2.947703	chr18	46759742	46760334	LTR|ERVL-MaLR|MLT1E3	+	chr18	46759723	46764408	AC090241.2|ENST00000624895.1	+	46759723	46764408	0.500000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	62801243	62801259	62801258	-	High_confidence	5	5	16	0.817183	3.773557	chr9	62800850	62801305	LTR|ERV1|LTR2	+	chr9	62798844	62801349	MSTRG.23373.1	-	62798844,62801081	62799262,62801349	0.562500
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	55119563	55119576	55119563	-	High_confidence	3	3	7	0.357517	2.584963	chr18	55119430	55119710	LINE|L2|L2	+	chr18	55108310	55119598	LINC01929|ENST00000592405.1	-	55108310,55116953,55119495	55108653,55117083,55119598	0.571429
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	116085460	116085473	116085461	+	High_confidence	4	7	14	0.715035	2.565448	chr5	116085484	116085794	DNA|hAT-Charlie|MER113	+	chr5	116085461	116293290	COMMD10|NM_001308080.1	+	116085461,116087496,116091078,116092544,116134067,116291516,116292450	116085606,116087587,116091189,116092700,116134178,116291576,116293290	0.785714
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	73841827	73841843	73841827	-	High_confidence	8	8	20	1.021478	3.176110	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.900000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	133396125	133396139	133396138	+	High_confidence	24	25	46	2.349400	4.706718	chr7	133396038	133396214	DNA|hAT-Charlie|MER5A	+	chr7	133396138	133630138	EXOC4|ENST00000486409.6	+	133396138,133475327,133480049,133630044	133396414,133475473,133480138,133630138	0.956522
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	88887263	88887342	88887263	-	RAMPAGE_only	5	5	28	1.430069	3.767183	chr1	88886926	88887218	SINE|Alu|AluSx1	-	chr1	88853223	88891496	GTF2B|ENST00000448623.5	-	88853223,88857372,88859881,88860139,88863980,88887260,88891482	88853346,88857487,88860011,88860286,88864114,88887367,88891496	0.928571
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	143740828	143740831	143740828	-	High_confidence	4	4	9	0.459665	2.750000	chr2	143740196	143740901	LTR|Gypsy|MamGypsy2-I	-	chr2	143667441	143741294	MSTRG.13793.1	-	143667441,143740558,143741089	143676581,143740909,143741294	0.777778
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	88	88	88	4.494504	3.649971	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	143018394	143018434	143018394	-	High_confidence	20	21	122	6.231017	5.339598	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	142981737	143018390	LY6E-DT|ENST00000517833.1	-	142981737,143018159	142982501,143018390	0.795082
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	74333493	74333550	74333493	-	RAMPAGE_only	4	4	19	0.970404	3.366091	chr11	74333233	74333564	LINE|CR1|L3b	-	chr11	74330311	74398465	PGM2L1|NM_173582.4	-	74330311,74338467,74342460,74342884,74343322,74345468,74346731,74347147,74351382,74368491,74370901,74371710,74374414,74398050	74336754,74338601,74342650,74343014,74343416,74345649,74346829,74347337,74351576,74368575,74370986,74371817,74374582,74398465	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	149752641	149752683	149752641	-	High_confidence	15	20	96	4.903095	4.569276	chr3	149752625	149752732	LINE|L2|L2a	-	chr3	149738469	149752499	COMMD2|ENST00000473414.5	-	149738469,149750677,149751402,149752209,149752377	149741718,149750851,149751485,149752287,149752499	0.968750
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	24682557	24682587	24682586	+	RAMPAGE_only	22	27	64	3.268730	5.294430	chr2	24682594	24682870	LINE|L2|L2c	+	chr2	24584540	24770702	NCOA1|ENST00000395856.3	+	24584540,24643965,24658660,24665748,24673365,24682950,24691480,24693251,24697657,24705085,24706567,24710930,24726588,24728307,24729500,24739431,24741783,24751981,24757972,24762686,24768223	24584560,24644122,24658766,24665915,24673463,24683128,24691660,24693347,24697798,24705233,24707888,24711111,24726706,24728476,24729815,24739533,24742186,24752156,24758156,24762776,24770702	0.953125
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	176411458	176411459	176411458	-	RAMPAGE_only	5	6	7	0.357517	2.807355	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.857143
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	45166222	45166233	45166232	+	RAMPAGE_only	7	7	13	0.663961	3.392747	chr7	45166175	45166333	SINE|Alu|AluJr	-	chr7	45157828	45186298	RAMP3|ENST00000496212.5	+	45157828,45177308,45183156,45186198	45157886,45177441,45183408,45186298	0.615385
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	170089428	170089527	170089512	-	High_confidence	3	3	33	1.685439	4.597276	chr4	170089443	170089514	LINE|L2|L2b	+	chr4	170070618	170089394	AADAT|ENST00000510340.5	-	170070618,170073135,170078508,170087115,170088395,170089260	170070652,170073345,170078583,170087248,170088564,170089394	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	81170412	81170431	81170430	-	High_confidence	9	9	33	1.685439	4.210765	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.939394
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	106977915	106977941	106977940	-	RAMPAGE_only	3	3	15	0.766109	3.506891	chr6	106977660	106977958	SINE|Alu|AluSc8	+	chr6	106969830	106976855	CD24|NM_001291738.1	-	106969830,106974577,106976741	106971834,106974754,106976855	0.800000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chrY	4036475	4036491	4036475	+	High_confidence	4	4	11	0.561813	2.550341	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	0.727273
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	229232053	229232057	229232053	-	High_confidence	12	12	20	1.021478	3.621928	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.850000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	127653742	127653784	127653783	+	RAMPAGE_only	5	5	20	1.021478	3.431624	chr9	127653827	127654016	LINE|L2|L2b	+	chr9	127651623	127684513	STXBP1|ENST00000647107.1	+	127651623,127653714,127658374,127660029,127661101,127663204,127665246,127666165,127668079,127669897,127672050,127673180,127675803,127676643,127678430,127680156,127682405,127683917,127684367	127651652,127653796,127658451,127660108,127661205,127663353,127665331,127666296,127668187,127669958,127672116,127673261,127675942,127676753,127678532,127680242,127682560,127683970,127684513	0.900000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	80374423	80374440	80374423	-	High_confidence	17	18	40	2.042956	4.509385	chr7	80374347	80374986	LINE|RTE-X|L4_B_Mam	+	chr7	80371516	80374439	LOC101927269|NR_110075.1	-	80371516,80372126,80373811,80374340	80371577,80372294,80373990,80374439	0.675000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	151669675	151669679	151669678	-	RAMPAGE_only	7	9	14	0.715035	2.873141	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.928571
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	155679929	155679930	155679929	-	High_confidence	9	9	10	0.510739	2.725481	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	0.900000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	138880196	138880197	138880196	-	RAMPAGE_only	16	16	16	0.817183	3.202820	chr5	138880161	138880436	SINE|Alu|AluJb	-	chr5	138872631	138875368	LRRTM2|ENST00000518785.1	-	138872631,138874907	138874128,138875368	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	12516204	12516231	12516230	-	High_confidence	5	8	17	0.868256	3.750000	chr18	12516214	12516349	LTR|ERVL-MaLR|MLT1K	+	chr18	12493138	12516225	SPIRE1|ENST00000487491.1	-	12493138,12496015,12506476,12512453,12516070	12493201,12496102,12506641,12512531,12516225	0.705882
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	65570509	65570536	65570519	+	High_confidence	11	13	63	3.217656	5.314681	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.619048
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	149509878	149509942	149509878	-	RAMPAGE_only	5	5	30	1.532217	4.004364	chr5	149509722	149509839	SINE|Alu|AluJb	-	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.933333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	12516314	12516319	12516314	-	High_confidence	4	4	10	0.510739	2.725481	chr18	12516214	12516349	LTR|ERVL-MaLR|MLT1K	+	chr18	12493138	12516225	SPIRE1|ENST00000487491.1	-	12493138,12496015,12506476,12512453,12516070	12493201,12496102,12506641,12512531,12516225	0.800000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	117454949	117454953	117454949	+	High_confidence	7	7	12	0.612887	2.913977	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.916667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	23960822	23960832	23960822	+	RAMPAGE_only	3	4	8	0.408591	2.500000	chr22	23960731	23960879	SINE|MIR|MIRc	-	chr22	23966837	23972559	DDTL|NM_001084393.1	+	23966837,23967385,23971285	23967022,23967561,23972559	0.875000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	5726324	5726325	5726324	-	High_confidence	50	54	60	3.064434	4.151203	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.866667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	50193959	50194023	50193959	-	High_confidence	5	5	29	1.481143	4.450212	chr17	50193783	50193912	SINE|MIR|MIR3	-	chr17	50190908	50194058	COL1A1|ENST00000476387.1	-	50190908,50191382,50191787,50191979,50192474,50192639,50192796,50192993,50193942	50190924,50191490,50191886,50192024,50192528,50192693,50192850,50193047,50194058	0.724138
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	180830990	180831010	180831009	+	High_confidence	5	5	16	0.817183	3.280639	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.750000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	30971741	30971779	30971778	+	High_confidence	2	3	7	0.357517	2.521641	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.857143
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	130017188	130017196	130017188	-	High_confidence	3	3	10	0.510739	2.725481	chr8	130017097	130017284	LINE|L2|L2a	-	chr8	129862249	130017129	FAM49B|ENST00000523993.5	-	129862249,129871374,129879388,129903311,129904498,129970942,130017017	129862334,129871496,129879471,129903350,129904585,129970995,130017129	0.600000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	46489999	46490037	46489999	-	High_confidence	8	8	36	1.838661	4.023141	chr19	46489891	46489994	LINE|L2|L2a	-	chr19	46481084	46490120	PPP5D1|ENST00000595691.1	-	46481084,46489865	46481440,46490120	0.888889
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	6208681	6208682	6208681	-	High_confidence	48	48	49	2.502621	3.593970	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.979592
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	10521487	10521526	10521525	+	High_confidence	5	5	12	0.612887	3.095795	chr6	10521558	10521623	LINE|L2|L2a	+	chr6	10521484	10621422	GCNT2|ENST00000474518.1	+	10521484,10527473,10528630,10621350	10521594,10527660,10528841,10621422	0.666667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	75248150	75248151	75248150	-	High_confidence	10	10	11	0.561813	2.521928	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.727273
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	46185106	46185207	46185153	-	RAMPAGE_only	3	3	19	0.970404	3.725481	chr12	46185122	46185283	DNA|hAT-Charlie|MER5A	-	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.947368
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	143018280	143018292	143018280	-	High_confidence	3	3	8	0.408591	2.750000	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	142981737	143018390	LY6E-DT|ENST00000517833.1	-	142981737,143018159	142982501,143018390	0.875000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	3062922	3062983	3062922	-	High_confidence	41	42	127	6.486386	5.321736	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.992126
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	191245125	191245164	191245143	+	High_confidence	3	3	12	0.612887	3.459432	chr2	191245108	191245343	LINE|L1|L1M4b	+	chr2	191245184	191346274	MYO1B|ENST00000418908.5	+	191245184,191276886,191296110,191329934,191341460,191346235	191245257,191277030,191296226,191330029,191341565,191346274	0.916667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	143039256	143039267	143039266	+	High_confidence	14	15	40	2.042956	4.560667	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.850000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	129338511	129338545	129338511	+	RAMPAGE_only	8	8	23	1.174700	3.447402	chr9	129338481	129338896	LTR|ERV1|MER41C	-	chr9	129336922	129347477	LINC01503|NR_120686.1	+	129336922,129338791,129341831,129347225	129336988,129338917,129342043,129347477	0.695652
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	20658273	20658339	20658338	+	High_confidence	8	9	41	2.094030	3.739354	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.731707
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	58578130	58578156	58578144	-	High_confidence	4	5	13	0.663961	2.873141	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.769231
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	143228011	143228038	143228037	+	RAMPAGE_only	51	51	123	6.282091	5.732377	chr2	143227673	143228117	LINE|L1|L1ME4a	-	chr2	143129412	143437357	ARHGAP15|ENST00000552641.5	+	143129412,143155476,143202133,143216383,143228580,143250510,143435600,143436912	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437357	0.536585
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	114705701	114705760	114705716	-	RAMPAGE_only	5	5	30	1.532217	3.721413	chr1	114705629	114705788	SINE|Alu|AluSx3	-	chr1	114704463	114716894	NRAS|NM_002524.4	-	114704463,114708153,114708530,114709568,114713799,114716049,114716657	114708050,114708192,114708654,114709728,114713978,114716177,114716894	0.933333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	37987981	37987994	37987989	+	High_confidence	16	16	50	2.553695	4.796566	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.740000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	9100034	9100055	9100034	+	RAMPAGE_only	3	3	7	0.357517	2.521641	chr18	9099671	9100262	LTR|ERV1|MER4A1_	-	chr18	9102629	9134345	NDUFV2|ENST00000318388.10	+	9102629,9117837,9119325,9119473,9122512,9124873,9126830,9134185	9102797,9117903,9119388,9119590,9122681,9124983,9126907,9134345	0.571429
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	56216141	56216170	56216141	+	High_confidence	6	6	10	0.510739	2.646439	chr4	56216025	56216165	SINE|MIR|MIR3	+	chr4	56216101	56328625	KIAA1211|ENST00000504228.6	+	56216101,56272320,56298213,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56216273,56272492,56298349,56307699,56310734,56313379,56316689,56323567,56324266,56328625	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	32505910	32505922	32505921	+	RAMPAGE_only	4	4	8	0.408591	2.750000	chr5	32505649	32506189	LTR|ERVL-MaLR|MLT1K	+	chr5	32531632	32601323	SUB1|ENST00000506237.5	+	32531632,32588511,32591562,32598960,32601004	32531916,32588584,32591685,32599069,32601323	0.625000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	16602105	16602143	16602117	-	RAMPAGE_only	3	3	10	0.510739	2.725481	chr12	16601954	16602133	SINE|MIR|MIR3	-	chr12	16548372	16600860	LMO3|ENST00000616247.4	-	16548372,16560412,16600713,16600722	16551327,16560538,16600721,16600860	0.800000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	54759970	54759974	54759973	-	High_confidence	11	13	21	1.072552	3.439936	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	18794054	18794078	18794077	+	High_confidence	12	12	46	2.349400	4.879664	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.956522
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	46087124	46087152	46087124	-	RAMPAGE_only	2	2	11	0.561813	2.921928	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084149	46088696	ATP5F1A|ENST00000586523.1	-	46084149	46088696	0.909091
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	110881148	110881159	110881148	+	High_confidence	4	4	11	0.561813	2.521928	chr10	110881075	110881155	DNA|TcMar-Mariner|MADE2	+	chr10	110880318	110887798	PDCD4|ENST00000492932.5	+	110880318,110881232,110883002,110885252,110887664	110880485,110881535,110883097,110885366,110887798	0.727273
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	102512272	102512273	102512272	+	RAMPAGE_only	6	6	8	0.408591	2.500000	chr2	102512307	102512701	LINE|CR1|L3	+	chr2	102473302	102533972	SLC9A4|NM_001011552.3	+	102473302,102478838,102503447,102505253,102508078,102508846,102512202,102514089,102519858,102525023,102526258,102532329	102474015,102479302,102503707,102505471,102508281,102508933,102512273,102514251,102519955,102525155,102526346,102533972	0.625000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	32927967	32927977	32927967	+	RAMPAGE_only	25	25	66	3.370878	5.266684	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.893939
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	102431228	102431279	102431244	-	High_confidence	5	5	32	1.634365	4.538910	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.875000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	46243208	46243303	46243250	-	RAMPAGE_only	3	3	27	1.378996	4.546594	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.925926
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	27331602	27331787	27331602	+	High_confidence	29	29	320	16.343651	5.526036	chr22	27331341	27331854	LTR|ERVL|LTR33	-	chr22	27331786	27379265	AL020994.2|ENST00000413244.1	+	27331786,27335157,27336096,27379185	27331938,27335330,27336262,27379265	0.928125
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	122444185	122444863	122444275	-	RAMPAGE_only	14	14	741	37.845766	6.558815	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	182928782	182928789	182928788	-	RAMPAGE_only	3	3	8	0.408591	2.807355	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.625000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	241372949	241372965	241372949	+	RAMPAGE_only	17	17	36	1.838661	3.594672	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241356296	241466030	FARP2|ENST00000373287.8	+	241356296,241373083,241403827,241404798,241407536,241411032,241413306,241417961,241431678,241434157,241434961,241436480,241441303,241456746,241462522,241463334,241463898,241465459	241356388,241373290,241403932,241404841,241407615,241411130,241413421,241418109,241431774,241434321,241435030,241436538,241441556,241456922,241462612,241463468,241463980,241466030	0.944444
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	15780729	15780740	15780729	-	High_confidence	19	19	44	2.247252	4.248842	chr12	15780696	15780826	LINE|L2|L2c	+	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.818182
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	46540512	46540549	46540548	-	RAMPAGE_only	7	10	29	1.481143	4.450212	chr19	46540383	46540588	LTR|ERVL-MaLR|MLT1B	-	chr19	46480795	46600932	PPP5D1|ENST00000602017.5	-	46480795,46525662,46526924,46600882	46481440,46525784,46527072,46600932	0.655172
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	24244622	24244633	24244622	+	RAMPAGE_only	3	5	8	0.408591	3.000000	chr8	24244484	24244842	LTR|ERVL-MaLR|THE1B	+	chr8	24294039	24359018	ADAM28|ENST00000265769.8	+	24294039,24299973,24309893,24310162,24311360,24313387,24320235,24321217,24323833,24326553,24329984,24331149,24332659,24335445,24339465,24341597,24343100,24343505,24349863,24351231,24351986,24353769,24354383	24294195,24300077,24309970,24310241,24311437,24313580,24320307,24321289,24324003,24326635,24330115,24331327,24332749,24335641,24339568,24341757,24343181,24343584,24349972,24351310,24352052,24353832,24359018	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	94691071	94691242	94691241	+	RAMPAGE_only	55	55	286	14.607138	6.776743	chr5	94691274	94691336	LINE|Penelope|Penelope1_Vert	+	chr5	94678398	94695871	SLF1|ENST00000450932.2	+	94678398,94686572,94688505,94689472,94691563,94692073,94694830	94678955,94686718,94688669,94689606,94691656,94692256,94695871	0.699301
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	55796687	55796688	55796687	-	High_confidence	12	13	16	0.817183	2.899397	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796688	LINC00520|ENST00000649892.1	-	55781136,55793367,55796602	55782581,55793456,55796688	0.500000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	98943525	98943576	98943575	+	High_confidence	8	9	22	1.123626	3.351953	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	16081995	16082036	16082032	+	High_confidence	3	5	12	0.612887	2.913977	chr19	16082077	16082207	SINE|MIR|MIRb	+	chr19	16081722	16093581	TPM4|ENST00000592138.5	+	16081722,16086422,16088026,16089044,16093535	16082046,16086540,16088097,16089120,16093581	0.916667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	100268235	100268286	100268285	+	RAMPAGE_only	6	7	36	1.838661	3.385867	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.944444
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	152412488	152412507	152412488	-	High_confidence	8	8	13	0.663961	2.688722	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.923077
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	78620056	78620057	78620056	+	High_confidence	11	14	14	0.715035	3.521641	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.857143
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	106097477	106097513	106097504	+	RAMPAGE_only	5	8	22	1.123626	2.624726	chr11	106097423	106097517	LTR|ERVL-MaLR|MLT1L	-	chr11	106091466	106098699	AASDHPPT|ENST00000534152.1	+	106091466,106096742	106094654,106098699	0.954545
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	222737262	222737296	222737289	+	High_confidence	37	39	149	7.610012	6.320689	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.557047
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	227534913	227534939	227534932	+	RAMPAGE_only	2	3	10	0.510739	2.947703	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227472371	227554545	AGFG1|ENST00000373671.7	+	227472371,227491546,227519947,227523762,227524761,227533548,227534844,227536624,227536900,227551958,227553703,227554435	227472588,227491640,227520063,227523925,227524915,227533758,227535025,227536704,227536993,227552117,227553795,227554545	0.600000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	166850261	166850275	166850261	+	RAMPAGE_only	2	2	8	0.408591	2.807355	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.875000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	175787769	175787806	175787802	-	High_confidence	2	2	11	0.561813	3.321928	chr4	175787777	175787911	LINE|L2|L2a	+	chr4	175632936	175787676	GPM6A|NM_001261448.1	-	175632936,175640128,175640752,175651833,175673679,175701574,175787335	175635057,175640194,175640829,175651987,175673836,175701767,175787676	0.727273
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	16712836	16712959	16712889	-	High_confidence	30	30	157	8.018604	6.255929	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.949045
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	104507235	104507289	104507271	+	RAMPAGE_only	4	5	24	1.225774	3.886842	chr2	104507130	104507346	SINE|MIR|MIR	-	chr2	104434377	104512757	LINC01102|ENST00000447380.1	+	104434377,104505865,104507231,104512042	104434523,104506303,104507406,104512757	0.958333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	69425658	69425692	69425689	+	High_confidence	7	10	29	1.481143	3.676441	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425689	69429621	AP000439.3|ENST00000545202.1	+	69425689,69427362	69425806,69429621	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	48683362	48683363	48683362	+	High_confidence	7	10	10	0.510739	2.721928	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	18565966	18565969	18565966	-	RAMPAGE_only	3	3	7	0.357517	2.584963	chr17	18563636	18567501	LINE|L1|L1PA16	+	chr17	18551027	18554265	CCDC144B|ENST00000609959.1	-	18551027,18551505,18553152,18553972	18551111,18551715,18553373,18554265	0.714286
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	129488837	129488891	129488856	+	High_confidence	11	11	30	1.532217	3.898069	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.966667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	57746128	57746129	57746128	+	High_confidence	29	30	30	1.532217	3.602589	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.966667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	197913295	197913312	197913295	-	High_confidence	7	7	18	0.919330	3.947703	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	113773685	113773686	113773685	-	High_confidence	12	13	16	0.817183	3.906891	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113744576	113773683	LINC01234|NR_110026.1	-	113744576,113767074,113773614	113746595,113767208,113773683	0.687500
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	64007058	64007080	64007058	+	RAMPAGE_only	6	7	15	0.766109	2.807355	chr1	64007065	64007141	SINE|MIR|MIRc	+	chr1	64009302	64181492	ROR1|ENST00000545203.2	+	64009302,64049690,64050685,64137368,64140108,64142404,64158980,64177427	64009376,64049978,64050716,64137496,64140426,64142650,64159192,64181492	0.666667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	112227198	112227205	112227198	+	High_confidence	7	7	31	1.583291	4.418157	chr11	112227196	112227258	SINE|MIR|MIR	+	chr11	112226431	112233810	PTS|ENST00000525803.1	+	112226431,112228593,112233162,112233431	112226526,112228673,112233233,112233810	0.935484
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	147839237	147839255	147839237	-	High_confidence	12	13	32	1.634365	4.351410	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.781250
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	48382869	48382927	48382926	+	High_confidence	3	3	10	0.510739	2.721928	chr4	48382966	48383189	SINE|Alu|AluJr4	+	chr4	48383677	48420489	SLAIN2|ENST00000510595.1	+	48383677,48394575,48420124	48383784,48394653,48420489	0.700000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	73841989	73842000	73841989	-	High_confidence	2	2	8	0.408591	2.750000	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	11192963	11192978	11192977	+	High_confidence	6	6	13	0.663961	3.084963	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.692308
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	135548336	135548351	135548350	+	RAMPAGE_only	6	6	14	0.715035	3.334679	chr8	135548149	135548560	LINE|L2|L2a	-	chr8	135542702	135647026	KHDRBS3|ENST00000524282.1	+	135542702,135548753,135557447,135581877,135646992	135542770,135548900,135557587,135582073,135647026	0.642857
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	7147287	7147288	7147287	+	High_confidence	11	11	15	0.766109	3.240224	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.933333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	19393734	19393735	19393734	-	High_confidence	10	10	10	0.510739	2.846439	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19392212	19393468	AC130456.7|ENST00000623838.1	-	19392212	19393468	0.700000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	123270200	123270215	123270214	-	High_confidence	4	4	9	0.459665	2.500000	chr12	123270153	123270246	DNA|hAT-Ac|OldhAT1	+	chr12	123260969	123270234	CDK2AP1|NM_001270433.1	-	123260969,123265195,123267184,123270176	123261803,123265322,123267282,123270234	0.888889
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	104763705	104763756	104763755	+	High_confidence	10	11	58	2.962287	4.729948	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	36805376	36805393	36805385	-	RAMPAGE_only	2	2	8	0.408591	2.521641	chr18	36805277	36805349	LINE|L2|L2b	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.750000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	59947221	59947222	59947221	+	RAMPAGE_only	19	19	23	1.174700	4.175736	chr20	59947224	59947528	SINE|Alu|AluSp	+	chr20	59940438	59948680	FAM217B|ENST00000360816.7	+	59940438,59942197,59942426,59943939	59940535,59942309,59942512,59948680	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	147173225	147173250	147173225	+	High_confidence	5	7	16	0.817183	3.452820	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.875000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	153871911	153871912	153871911	+	High_confidence	4	4	7	0.357517	2.807355	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	175787592	175787652	175787625	-	High_confidence	24	24	66	3.370878	5.161660	chr4	175787512	175787708	LINE|L2|L2	+	chr4	175632936	175787676	GPM6A|NM_001261448.1	-	175632936,175640128,175640752,175651833,175673679,175701574,175787335	175635057,175640194,175640829,175651987,175673836,175701767,175787676	0.818182
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100829554	100829556	100829555	+	High_confidence	5	10	12	0.612887	3.095795	chr14	100829596	100829639	LINE|L2|L2b	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.833333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	90405354	90405647	90405472	+	RAMPAGE_only	9	9	184	9.397599	5.389118	chr14	90405466	90405547	SINE|tRNA-RTE|MamSINE1	+	chr14	90396982	90408261	CALM1|ENST00000356978.8	+	90396982,90400064,90401258,90403861,90404378,90404688	90397233,90400095,90401402,90403968,90404514,90408261	0.983696
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	61812126	61812162	61812143	+	High_confidence	3	3	10	0.510739	2.646439	chr14	61812067	61812179	LINE|L2|L2a	-	chr14	61812705	61996460	SYT16|ENST00000636344.1	+	61812705,61970131,61995875	61812810,61970311,61996460	0.600000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	8776425	8776429	8776425	-	High_confidence	9	9	16	0.817183	3.323231	chr11	8776369	8776474	LINE|L2|L2b	-	chr11	8730980	8776679	ST5|ENST00000533016.1	-	8730980,8750620,8776191	8731209,8750725,8776679	0.875000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	99471746	99471766	99471746	-	RAMPAGE_only	7	7	17	0.868256	3.292770	chr7	99471609	99471877	SINE|Alu|AluSx1	+	chr7	99458194	99466331	ATP5MF|ENST00000292475.7	-	99458194,99459146,99460085,99466110	99458355,99459263,99460193,99466331	0.823529
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	2242922	2242923	2242922	+	High_confidence	16	16	16	0.817183	3.577820	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	98732841	98732896	98732879	+	High_confidence	2	2	15	0.766109	3.235926	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98732713	98794393	ST3GAL6|ENST00000497621.5	+	98732713,98756368,98768429,98770878,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733011,98756540,98768529,98770956,98772916,98773983,98785040,98788222,98788463,98791993,98794393	0.733333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	80147915	80147930	80147929	+	High_confidence	5	5	10	0.510739	3.121928	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80147923	80178432	PARD6G-AS1|NR_028340.1	+	80147923,80175879,80178085	80148254,80175935,80178432	0.600000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	95121533	95121558	95121537	-	High_confidence	3	3	15	0.766109	3.235926	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.866667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	50131139	50131140	50131139	-	High_confidence	15	15	22	1.123626	3.065957	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.909091
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	43013392	43013393	43013392	-	High_confidence	13	13	15	0.766109	3.456565	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	3795750	3795789	3795788	+	High_confidence	8	8	29	1.481143	4.090234	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	83208459	83208489	83208477	-	High_confidence	3	3	15	0.766109	3.664498	chr15	83208475	83208527	SINE|MIR|MIRb	-	chr15	83139131	83208462	MSTRG.8206.4	-	83139131,83151214,83157414,83157902,83163998,83207330,83207797,83208219	83139275,83151361,83157573,83158041,83164075,83207653,83207817,83208462	0.933333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	20423688	20423704	20423703	-	RAMPAGE_only	13	17	46	2.349400	4.425119	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20395954	20424921	MSTRG.12006.3	-	20395954,20408949,20424785	20399038,20409045,20424921	0.804348
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	15657883	15657884	15657883	+	RAMPAGE_only	15	16	16	0.817183	2.599581	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.937500
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	13137041	13137064	13137063	+	RAMPAGE_only	2	3	11	0.561813	3.121928	chr10	13136997	13137298	SINE|Alu|AluSz	+	chr10	13100224	13138291	OPTN|ENST00000378747.7	+	13100224,13108137,13109111,13110273,13112452,13116266,13118887,13122384,13123994,13125417,13125945,13127744,13132066,13133501,13136744	13100302,13108289,13109288,13110476,13112635,13116340,13119040,13122487,13124110,13125567,13126039,13127903,13132197,13133581,13138291	0.909091
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	58455289	58455341	58455289	-	RAMPAGE_only	2	2	15	0.766109	3.664498	chr5	58455099	58455251	DNA|hAT-Charlie|MER5A	-	chr5	58453981	58460139	PLK2|NM_006622.3	-	58453981,58454910,58455284,58455538,58456025,58456491,58456944,58457180,58457487,58458083,58458398,58458724,58458984,58459689	58454774,58455021,58455414,58455779,58456155,58456589,58457092,58457379,58457583,58458171,58458528,58458841,58459092,58460139	0.933333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	85330255	85330278	85330255	-	High_confidence	4	4	14	0.715035	3.238901	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314922	85330329	ADAMTS7P4|ENST00000558365.1	-	85314922,85319857,85330077	85314984,85319995,85330329	0.500000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	51153837	51153859	51153837	+	High_confidence	5	6	15	0.766109	3.521641	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51154043	51155759	NME1|ENST00000456492.1	+	51154043,51155650	51154444,51155759	0.800000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	147382877	147382889	147382888	+	High_confidence	3	3	10	0.510739	2.721928	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.900000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	2867850	2867851	2867850	+	High_confidence	7	7	11	0.561813	2.845351	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	80744224	80744333	80744224	-	RAMPAGE_only	9	9	41	2.094030	4.325071	chr7	80744204	80744304	SINE|MIR|MIR	-	chr7	80742537	80919351	SEMA3C|ENST00000265361.7	-	80742537,80748897,80751268,80758330,80761615,80765154,80789305,80798091,80800756,80802664,80804105,80805638,80810610,80818298,80827424,80828584,80916678,80918827	80745307,80749028,80751336,80758488,80761657,80765243,80789528,80798236,80800826,80802779,80804248,80805758,80810701,80818418,80827487,80828745,80916819,80919351	0.975610
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	147839194	147839195	147839194	-	High_confidence	7	8	8	0.408591	2.807355	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.875000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	139344537	139344548	139344537	+	High_confidence	26	40	94	4.800947	4.961473	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.946809
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	202565189	202565287	202565216	+	RAMPAGE_only	4	4	53	2.706917	4.578172	chr2	202565124	202565329	LINE|CR1|L3b	-	chr2	202377433	202567751	BMPR2|ENST00000374574.2	+	202377433,202464808,202467518,202513718,202514887,202518821,202520086,202530793,202532584,202542310,202552715,202559695	202377550,202464979,202467689,202513829,202514979,202519052,202520201,202530954,202532732,202542447,202552888,202567751	0.943396
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31119155	31119216	31119191	-	High_confidence	2	2	12	0.612887	3.084963	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.916667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	101550432	101550448	101550432	+	High_confidence	4	4	14	0.715035	3.546594	chrX	101550258	101550488	LINE|L1|L1M5	+	chrX	101550530	101554700	ARMCX1|ENST00000372829.7	+	101550530,101550970,101551568,101552808	101550660,101551024,101551633,101554700	0.928571
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	59619894	59619923	59619894	+	High_confidence	740	921	2608	133.200752	5.847876	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.944018
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	23939325	23939347	23939346	+	RAMPAGE_only	4	4	9	0.459665	3.169925	chr2	23939241	23939827	LTR|ERV1|MER92B	-	chr2	23940418	24004909	UBXN2A|ENST00000309033.4	+	23940418,23958300,23971275,23976968,23982895,23984672,23999671	23940648,23958355,23971414,23977075,23983033,23984831,24004909	0.555556
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	17918814	17918856	17918825	-	RAMPAGE_only	3	3	15	0.766109	3.039149	chr22	17918807	17918952	LINE|L2|L2a	-	chr22	17834334	17906886	MICAL3|NM_001122731.2	-	17834334,17841821,17864898,17865923,17871836,17885877,17887169,17887322,17889033,17891484,17893807,17895283,17896245,17896723,17899447,17900841,17901877,17902630,17904631,17906548	17834549,17842017,17864986,17866012,17872023,17886051,17887232,17887435,17889230,17891632,17893904,17895410,17896361,17896981,17899548,17900997,17901979,17902747,17904839,17906886	0.733333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	99773361	99773389	99773361	+	High_confidence	3	3	17	0.868256	3.500000	chr14	99773172	99773361	DNA|hAT-Charlie|Charlie18a	-	chr14	99773703	99865611	EML1|ENST00000556199.1	+	99773703,99850859,99865513	99774013,99851035,99865611	0.529412
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	15798664	15798683	15798664	-	RAMPAGE_only	2	3	10	0.510739	2.646439	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	148319966	148319975	148319974	+	RAMPAGE_only	4	6	8	0.408591	2.500000	chr5	148319975	148321427	LINE|L1|L1P1	+	chr5	148321202	148339722	SPINK9|ENST00000511717.6	+	148321202,148323678,148336421,148338477,148339666	148321400,148323868,148336453,148338605,148339722	0.625000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	86746935	86746965	86746935	+	RAMPAGE_only	2	2	14	0.715035	3.026987	chr1	86746898	86746967	DNA|hAT-Charlie|MER5A	+	chr1	86704575	86748184	SH3GLB1|ENST00000370558.8	+	86704575,86715723,86719506,86722539,86724312,86734601,86735078,86742207,86743127	86704971,86715865,86719635,86722673,86724405,86734691,86735179,86742436,86748184	0.928571
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	43167346	43167347	43167346	-	RAMPAGE_only	56	58	60	3.064434	4.602912	chr17	43167246	43167698	LTR|ERV1|LTR2	-	chr17	43148367	43170316	AC060780.1|ENST00000635600.1	-	43148367,43159422,43166979,43170125	43148783,43159727,43167849,43170316	0.900000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31119080	31119121	31119086	-	High_confidence	14	14	68	3.473026	4.440774	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.941176
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	8384046	8384060	8384059	-	High_confidence	5	8	23	1.174700	3.879664	chr17	8384033	8384050	SINE|Alu|AluSq	-	chr17	8377515	8383250	RPL26|ENST00000293842.10	-	8377515,8379795,8382142,8383156	8377692,8379936,8382315,8383250	0.565217
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	79631256	79631329	79631302	+	High_confidence	84	84	414	21.144598	6.034150	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.975845
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	168093055	168093063	168093055	-	High_confidence	15	16	25	1.276848	3.970176	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.840000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65958630	65958631	65958630	+	RAMPAGE_only	4	4	6	0.306443	2.584963	chr11	65958625	65958770	SINE|MIR|MIRc	+	chr11	65945643	65959963	TSGA10IP|NM_152762.2	+	65945643,65946879,65947109,65948000,65953566,65958882,65959189,65959816	65945822,65947016,65947828,65948148,65953737,65958982,65959314,65959963	0.833333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	80059915	80059926	80059918	+	High_confidence	60	68	131	6.690682	4.937569	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.977099
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	104812540	104812573	104812565	-	RAMPAGE_only	2	2	9	0.459665	2.641604	chr2	104812167	104812579	LINE|L1|L1ME3A	+	chr2	104807572	104851453	PANTR1|ENST00000443988.5	-	104807572,104812432,104812708,104851311	104807843,104812618,104812784,104851453	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	59708599	59708621	59708599	-	RAMPAGE_only	4	4	12	0.612887	3.188722	chr13	59708300	59708705	LINE|L2|L2-3_Crp	+	chr13	59665691	59751021	DIAPH3|ENST00000649952.1	-	59665691,59750838	59666846,59751021	0.750000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	73513609	73513648	73513647	+	High_confidence	7	7	24	1.225774	3.882045	chr17	73512579	73514063	LINE|L1|L1ME4b	+	chr17	73513682	73518770	LOC101928251|NR_135635.1	+	73513682,73516600	73513790,73518770	0.958333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	196500639	196500682	196500639	-	RAMPAGE_only	3	3	10	0.510739	3.121928	chr3	196500000	196500645	LINE|L1|L1MB3	+	chr3	196471759	196503677	RNF168|ENST00000437070.1	-	196471759,196475230,196483769,196487398,196502872	196472772,196475312,196483891,196487578,196503677	0.500000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	28233998	28234027	28234014	-	RAMPAGE_only	2	3	10	0.510739	2.947703	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.900000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	195688566	195688601	195688583	+	High_confidence	2	2	11	0.561813	3.121928	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688520	195708807	MUC20-OT1|ENST00000630417.2	+	195688520,195689338,195699029,195708133,195708746	195688797,195689438,195699207,195708435,195708807	0.818182
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	88667567	88667676	88667634	+	RAMPAGE_only	261	269	1487	75.946901	6.153381	chr10	88667660	88667752	DNA|hAT-Ac|OldhAT1	+	chr10	88664457	88678814	LIPF|ENST00000355843.2	+	88664457,88665478,88667286,88667568,88668656,88669836,88671828,88673587,88675585,88676208,88678444	88664491,88665559,88667402,88667686,88668756,88669946,88671965,88673734,88675657,88676280,88678814	0.990585
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	27613319	27613339	27613319	+	High_confidence	1	1	6	0.306443	2.584963	chr14	27612881	27613894	LTR|ERV1|MER4B-int	+	chr14	27612610	27639636	LINC00645|ENST00000557399.1	+	27612610,27613420,27619822,27634243,27636419	27612677,27613496,27619873,27634344,27639636	0.833333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	31376356	31376357	31376356	-	High_confidence	88	89	89	4.545578	4.190776	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.943820
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	123179121	123179166	123179155	-	RAMPAGE_only	2	2	11	0.561813	3.321928	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.909091
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	109383442	109383455	109383442	-	High_confidence	4	4	13	0.663961	2.751629	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.923077
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	49646471	49646510	49646495	-	High_confidence	3	3	13	0.663961	2.855389	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.769231
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	23696418	23696465	23696421	+	High_confidence	4	4	20	1.021478	3.346439	chr22	23696381	23696442	SINE|MIR|MIRb	-	chr22	23696483	23699176	RGL4|ENST00000452208.1	+	23696483,23697170,23697837,23698211,23698843	23696688,23697245,23697861,23698333,23699176	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	147937505	147937544	147937519	+	RAMPAGE_only	6	9	22	1.123626	3.641250	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147943244	147948534	FMR1|ENST00000463120.2	+	147943244,147944868,147945533,147948412	147943326,147945051,147945616,147948534	0.818182
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	72351065	72351071	72351065	-	High_confidence	3	3	9	0.459665	2.947703	chr4	72350303	72351253	LINE|L1|L1MEc	-	chr4	72280968	72351788	MSTRG.17730.1	-	72280968,72288750,72290854,72295653,72298276,72303916,72305986,72309396,72311047,72312290,72313676,72315857,72318571,72319331,72319857,72320713,72323013,72339493,72350793	72283704,72288868,72291062,72295786,72298442,72304080,72306067,72309520,72311181,72312466,72313822,72315971,72318704,72319475,72319963,72320870,72323097,72339693,72351788	0.888889
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	18063185	18063205	18063185	-	High_confidence	2	2	7	0.357517	2.521641	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	64439294	64439315	64439294	+	RAMPAGE_only	2	2	6	0.306443	2.584963	chr12	64439324	64439679	DNA|hAT-Charlie|Charlie4a	+	chr12	64404372	64448684	XPOT|NM_007235.4	+	64404372,64409961,64414906,64416697,64418045,64418875,64420069,64420352,64421234,64423004,64423181,64424598,64425037,64425337,64425814,64428050,64430048,64431537,64433413,64434506,64434793,64435626,64439243,64445074,64448104	64404804,64410095,64414989,64416754,64418115,64419094,64420254,64420521,64421471,64423043,64423244,64424723,64425182,64425457,64425909,64428120,64430287,64431823,64433603,64434623,64434909,64435674,64439315,64445131,64448684	0.833333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	65722886	65722919	65722918	-	High_confidence	2	2	7	0.357517	2.521641	chr5	65722781	65722883	DNA|hAT-Ac|OldhAT1	-	chr5	65680687	65723035	SGTB|ENST00000506816.1	-	65680687,65685367,65704278,65708488,65712960,65720707,65722756	65680794,65685472,65704378,65708558,65713064,65720829,65723035	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	80485592	80485593	80485592	+	High_confidence	42	42	59	3.013361	5.084009	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.728814
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	75626279	75626305	75626304	-	High_confidence	9	9	23	1.174700	3.243300	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.956522
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	133103241	133103266	133103244	-	High_confidence	9	10	22	1.123626	3.356492	chr8	133103139	133103300	SINE|MIR|MIRc	+	chr8	133036727	133103066	SLA|NM_001282964.1	-	133036727,133039997,133047829,133049901,133050815,133060099,133102552	133038737,133040130,133047933,133049988,133050915,133060200,133103066	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	5680240	5680261	5680248	-	High_confidence	19	19	75	3.830543	4.839398	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.986667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	111911611	111911613	111911612	+	High_confidence	21	45	49	2.502621	4.712581	chr3	111911655	111911757	DNA|hAT-Ac|OldhAT1	+	chr3	111911609	111976465	PHLDB2|ENST00000495180.1	+	111911609,111913318,111919071,111920281,111932268,111939474,111940534,111945267,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111911724,111913702,111919215,111920419,111932397,111939630,111940645,111945357,111954029,111962312,111966703,111967824,111969909,111973817,111976465	0.918367
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	32446970	32446997	32446977	+	High_confidence	24	25	76	3.881617	5.269406	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.868421
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	12802576	12802577	12802576	-	High_confidence	12	12	12	0.612887	2.918296	chr18	12802496	12804008	LINE|L1|L1MA6	+	chr18	12785480	12802153	PTPN2|ENST00000591901.5	-	12785480,12793481,12794383,12801969	12785844,12793574,12794485,12802153	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	86453182	86453232	86453195	-	High_confidence	11	20	102	5.209539	4.680333	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016074	86453196	MAPK10|ENST00000641854.1	-	86016074,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86107352,86159467,86194407,86354644,86453196	0.882353
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	91907424	91907577	91907424	-	High_confidence	183	187	464	23.698293	5.760280	chr8	91907266	91907430	SINE|MIR|MIRc	-	chr8	91564979	91907453	AC103409.1|ENST00000518416.1	-	91564979,91773069,91861474,91907273	91565141,91773199,91861579,91907453	0.627155
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	35732322	35732368	35732336	-	High_confidence	2	2	11	0.561813	2.921928	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.727273
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	70257706	70257720	70257706	+	High_confidence	14	14	24	1.225774	4.168296	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	45862566	45862567	45862566	-	High_confidence	8	8	11	0.561813	3.027169	chr19	45862393	45862941	LINE|L2|L2b	-	chr19	45848829	45863194	SYMPK|ENST00000594293.5	-	45848829,45852311,45852481,45854174,45854390,45861899,45863057	45848876,45852385,45852535,45854240,45854507,45862027,45863194	0.636364
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	172958907	172958919	172958915	+	High_confidence	8	8	20	1.021478	2.970840	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.950000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	92536703	92536704	92536703	-	High_confidence	5	7	8	0.408591	2.807355	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.875000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	66075086	66075092	66075086	+	RAMPAGE_only	6	6	12	0.612887	2.663533	chr8	66075057	66075299	SINE|Alu|AluSz	-	chr8	66043476	66076829	DNAJC5B|ENST00000522619.1	+	66043476,66051530,66076659	66043611,66051666,66076829	0.583333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	129052235	129052253	129052252	-	RAMPAGE_only	3	3	7	0.357517	2.521641	chr3	129051924	129052338	LTR|ERVL-MaLR|MLT1F1	+	chr3	128970935	128994143	KIAA1257|NM_020741.2	-	128970935,128975778,128976978,128978044,128987615,128988727,128993042,128993979	128971433,128975903,128977066,128978185,128987829,128988918,128993336,128994143	0.571429
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	57487060	57487061	57487060	+	RAMPAGE_only	5	5	7	0.357517	2.584963	chr17	57486852	57487083	LINE|L2|L2c	-	chr17	57444486	57596950	MSI2|ENST00000582772.1	+	57444486,57529675,57596867	57444752,57529724,57596950	0.571429
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	8776384	8776392	8776391	-	High_confidence	7	7	14	0.715035	2.842371	chr11	8776369	8776474	LINE|L2|L2b	-	chr11	8730980	8776679	ST5|ENST00000533016.1	-	8730980,8750620,8776191	8731209,8750725,8776679	0.785714
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	6866521	6866533	6866521	-	High_confidence	4	4	13	0.663961	3.584963	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.769231
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	34244725	34244761	34244753	-	High_confidence	5	5	32	1.634365	4.220168	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244796	MSTRG.18487.2	-	34175821,34179012,34182679,34200820,34218294,34239374,34244615	34175957,34179097,34182867,34200921,34218450,34239448,34244796	0.843750
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	34244813	34244827	34244815	-	High_confidence	8	15	26	1.327922	4.209867	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244796	MSTRG.18487.2	-	34175821,34179012,34182679,34200820,34218294,34239374,34244615	34175957,34179097,34182867,34200921,34218450,34239448,34244796	0.807692
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	73841952	73841962	73841961	-	High_confidence	5	5	9	0.459665	2.725481	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.888889
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	175891539	175891569	175891568	-	RAMPAGE_only	10	12	57	2.911213	5.244999	chr4	175890999	175891614	LTR|ERV1|MER90a	+	chr4	175632936	175813114	GPM6A|NM_201591.2	-	175632936,175640128,175640752,175651833,175673679,175701574,175812190	175635057,175640194,175640829,175651987,175673836,175701767,175813114	0.842105
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	22409279	22409309	22409282	+	RAMPAGE_only	32	38	158	8.069677	5.928864	chr12	22409250	22409629	LTR|ERVL-MaLR|MLT1G3	-	chr12	22601424	22618867	AC087241.1|ENST00000508615.2	+	22601424,22618484	22601470,22618867	0.531646
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	156752092	156752111	156752110	-	High_confidence	2	2	7	0.357517	2.584963	chr1	156752098	156752165	LINE|L2|L2c	-	chr1	156742106	156752232	HDGF|NM_001126051.1	-	156742106,156743651,156744162,156745007,156745296,156752037	156743455,156743878,156744348,156745146,156745373,156752232	0.857143
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	68736459	68736462	68736459	-	RAMPAGE_only	6	7	11	0.561813	2.663533	chr4	68735466	68736444	LTR|ERV1|MER61-int	-	chr4	68704599	68712498	AC147055.1|ENST00000509261.1	-	68704599,68708647,68710039,68712312	68704874,68708855,68710120,68712498	0.909091
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	75127267	75127272	75127267	-	RAMPAGE_only	2	3	7	0.357517	2.584963	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.714286
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	102450314	102450360	102450348	-	High_confidence	9	11	36	1.838661	4.571861	chr11	102450237	102450387	LTR|ERVL-MaLR|MLT1K	+	chr11	102398855	102451231	TMEM123|ENST00000528969.5	-	102398855,102401538,102401915,102448811,102451201	102398891,102401692,102402206,102448868,102451231	0.888889
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	82049696	82049707	82049696	-	RAMPAGE_only	7	7	14	0.715035	3.334679	chr7	82049612	82049763	DNA|hAT-Charlie|MER5A1	-	chr7	82012042	82038235	CACNA2D1|ENST00000492734.1	-	82012042,82013460,82014400,82032796,82038076	82012243,82013510,82014479,82032901,82038235	0.500000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	20658385	20658427	20658385	+	High_confidence	4	4	20	1.021478	2.901609	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.800000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	57568212	57568223	57568220	-	High_confidence	3	3	11	0.561813	3.095795	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	47783107	47783120	47783107	-	RAMPAGE_only	3	3	9	0.459665	2.750000	chr11	47782958	47783061	DNA|TcMar-Tigger|MER47A	-	chr11	47778236	47848313	NUP160|ENST00000530326.5	-	47778236,47784921,47786452,47788181,47788500,47791929,47792785,47797778,47797977,47798167,47798367,47801810,47803437,47804548,47806152,47807069,47808395,47812063,47812301,47812881,47813315,47815478,47815945,47818055,47819373,47821723,47822086,47835650,47836886,47837544,47839842,47840377,47847847,47848218	47779164,47785063,47786554,47788305,47788611,47791990,47792946,47797884,47798074,47798262,47798463,47801930,47803536,47804618,47806312,47807140,47808529,47812224,47812429,47813047,47813415,47815649,47816029,47818124,47819458,47821821,47822164,47835809,47837001,47837623,47840065,47840588,47847959,47848313	0.888889
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	3195732	3195773	3195772	-	High_confidence	31	31	75	3.830543	5.258232	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.920000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	50139961	50139963	50139961	-	RAMPAGE_only	3	6	8	0.408591	2.500000	chr14	50139667	50139914	SINE|MIR|MIRb	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.875000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	111841694	111841723	111841722	-	High_confidence	4	6	9	0.459665	2.725481	chr12	111841557	111841731	SINE|MIR|MIRb	+	chr12	111839776	111841710	MAPKAPK5-AS1|ENST00000590479.5	-	111839776,111840332,111841326,111841683	111840003,111840477,111841470,111841710	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	39800271	39800298	39800293	-	High_confidence	6	6	17	0.868256	3.734522	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.529412
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	99155935	99155947	99155946	-	High_confidence	6	6	15	0.766109	3.378783	chr12	99155702	99156003	LINE|CR1|L3	-	chr12	98743973	99155090	ANKS1B|NM_001204067.1	-	98743973,98751354,98773041,98781116,98782125,98798933,98800996,98832028,99053156,99084924,99154288,99154969	98745846,98751522,98773179,98781203,98782137,98799005,98801125,98832136,99053309,99085023,99154395,99155090	0.866667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	134527596	134527597	134527596	+	High_confidence	354	358	364	18.590903	6.699972	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.947802
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	34988767	34988792	34988791	-	High_confidence	4	4	16	0.817183	3.375000	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.875000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	149896979	149897006	149897005	-	High_confidence	42	46	121	6.179943	5.664926	chrX	149896953	149897122	LTR|ERV1|LTR54	+	chrX	149878762	149897006	MAGEA8-AS1|NR_102703.1	-	149878762,149879265,149879800,149882367,149896926	149878996,149879358,149879858,149882498,149897006	0.611570
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	88635646	88635666	88635646	+	High_confidence	4	4	11	0.561813	2.550341	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.818182
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	141332616	141332617	141332616	-	High_confidence	53	53	53	2.706917	3.513614	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	12776136	12776137	12776136	-	High_confidence	26	26	29	1.481143	3.671554	chr18	12775721	12777416	LTR|ERV1|LTR12C	-	chr18	12739489	12776137	AP005482.1|ENST00000589930.2	-	12739489,12749293,12765276,12775668	12739930,12749533,12765455,12776137	0.965517
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	15780778	15780782	15780781	-	High_confidence	7	7	12	0.612887	3.095795	chr12	15780696	15780826	LINE|L2|L2c	+	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.500000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	19955978	19956027	19955978	+	High_confidence	3	3	15	0.766109	2.950212	chr8	19955939	19955979	DNA|TcMar-Tigger|Tigger19b	+	chr8	19956004	19967196	LPL|ENST00000650478.1	+	19956004,19960900,19962114,19965309	19956083,19961083,19962219,19967196	0.866667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	110440313	110440338	110440313	-	RAMPAGE_only	6	9	18	0.919330	3.461320	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	77129077	77129078	77129077	+	High_confidence	599	763	781	39.888722	5.695888	chr1	77128993	77129084	DNA|hAT-Charlie|MER58B	+	chr1	77129113	77129668	AC113935.1|ENST00000471722.1	+	77129113	77129668	0.850192
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	4355592	4355593	4355592	-	High_confidence	146	148	148	7.558938	4.792924	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.959459
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	28224864	28224886	28224885	+	High_confidence	2	2	9	0.459665	3.000000	chr6	28224900	28225028	LINE|L1|HAL1ME	+	chr6	28224885	28227207	ZSCAN9|ENST00000531941.1	+	28224885,28227011	28225268,28227207	0.555556
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	94683469	94683484	94683483	+	High_confidence	22	22	41	2.094030	4.156245	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_001128925.1	+	94683493,94687769,94688124,94694916,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94720537,94724533,94733438,94736190	0.902439
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	27331403	27331410	27331403	+	High_confidence	5	5	9	0.459665	2.725481	chr22	27331341	27331854	LTR|ERVL|LTR33	-	chr22	27331786	27379265	AL020994.2|ENST00000413244.1	+	27331786,27335157,27336096,27379185	27331938,27335330,27336262,27379265	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	21845527	21845528	21845527	+	RAMPAGE_only	8	8	12	0.612887	3.022055	chr6	21845434	21845600	DNA?|DNA?|Eulor6D	-	chr6	21898719	22214505	CASC15|ENST00000444265.6	+	21898719,21909469,21978944,22020338,22056545,22063019,22110746,22191566,22194044,22205184,22214306	21898784,21909603,21979062,22020542,22056690,22063240,22110920,22191656,22194116,22205259,22214505	0.583333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	170226587	170226588	170226587	+	High_confidence	46	49	58	2.962287	5.231756	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.672414
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	56157286	56157416	56157286	+	High_confidence	39	39	392	20.020972	5.800029	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.900510
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	97717182	97717205	97717204	-	High_confidence	3	3	8	0.408591	2.750000	chr6	97717030	97717234	LINE|L1|L1MEg	-	chr6	97710952	97717197	AL080316.1|ENST00000432438.1	-	97710952,97712336,97717100	97711198,97712492,97717197	0.750000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	137254876	137254941	137254940	-	RAMPAGE_only	63	70	223	11.389482	5.550329	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.995516
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	82081601	82081616	82081606	-	RAMPAGE_only	4	4	11	0.561813	2.721928	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	0.818182
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	80148048	80148049	80148048	+	High_confidence	11	11	12	0.612887	3.095795	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.500000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	170751705	170751707	170751706	+	High_confidence	31	48	52	2.655843	4.967049	chr2	170750015	170751707	LINE|L1|L1MEc	+	chr2	170751804	170752788	EIF2S2P4|ENST00000461070.1	+	170751804	170752788	0.961538
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	24968452	24968484	24968471	-	High_confidence	15	15	64	3.268730	5.478232	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24940601	24968487	TPTE2P1|ENST00000429698.1	-	24940601,24941986,24942931,24951396,24968205	24940785,24942108,24943021,24951488,24968487	0.500000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	87039869	87039870	87039869	-	RAMPAGE_only	7	7	7	0.357517	2.521641	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.857143
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	36481331	36481346	36481334	-	High_confidence	11	12	40	2.042956	4.003702	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.825000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	47743725	47743733	47743725	+	High_confidence	11	11	32	1.634365	4.438067	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.625000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	176617412	176617422	176617421	-	RAMPAGE_only	8	8	17	0.868256	3.405639	chr5	176617331	176617629	SINE|Alu|AluYm1	-	chr5	176595801	176610133	GPRIN1|ENST00000303991.4	-	176595801,176609998	176599877,176610133	0.941176
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	15740056	15740078	15740077	-	RAMPAGE_only	3	3	11	0.561813	2.921928	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.909091
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	9140379	9140422	9140390	+	High_confidence	32	32	127	6.486386	5.674279	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.866142
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	39657322	39657328	39657322	+	High_confidence	4	4	11	0.561813	3.095795	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657319	39662889	B3GALT5|NM_033171.2	+	39657319,39657784,39659752,39660559	39657599,39657893,39659912,39662889	0.818182
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	103919480	103919511	103919510	-	High_confidence	6	6	16	0.817183	3.506891	chrX	103919452	103919627	SINE|MIR|MIRb	-	chrX	103917410	103919548	TMSB15B-AS1|ENST00000614615.1	-	103917410,103918408,103918831,103919424	103918225,103918460,103919080,103919548	0.562500
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	212792421	212792449	212792444	-	High_confidence	5	5	16	0.817183	3.625000	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.812500
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	107580148	107580198	107580197	-	High_confidence	4	4	17	0.868256	3.024397	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107579556	107580057	AC004839.1|ENST00000610269.1	-	107579556	107580057	0.882353
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	65285119	65285132	65285119	+	RAMPAGE_only	3	3	9	0.459665	2.725481	chr14	65284944	65285417	LTR|ERVL-MaLR|MLT1C	+	chr14	65410591	65744121	FUT8|NM_178156.2	+	65410591,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65411993,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65744121	0.888889
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	28681084	28681085	28681084	+	RAMPAGE_only	9	9	9	0.459665	3.169925	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	0.888889
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	21200804	21200844	21200825	+	High_confidence	9	10	23	1.174700	4.061482	chr6	21200835	21201081	LINE|L1|L1MC3	+	chr6	21200811	21231441	CDKAL1|ENST00000476517.1	+	21200811,21201109,21230847	21200892,21201274,21231441	0.913043
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	45269092	45269149	45269146	-	High_confidence	8	8	54	2.757991	4.037660	chr22	45268944	45269106	DNA|hAT-Tip100|ORSL	-	chr22	45268785	45269157	MSTRG.15849.1	-	45268785	45269157	0.925926
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	4143196	4143215	4143199	+	High_confidence	91	100	224	11.440555	5.505614	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.973214
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	238485992	238486023	238485992	-	High_confidence	2	2	12	0.612887	3.277613	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480383	238486017	LINC01139|NR_015407.1	-	238480383,238485784	238481681,238486017	0.750000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	8697146	8697194	8697193	+	High_confidence	11	11	33	1.685439	4.476410	chr12	8697043	8697239	SINE|MIR|MIRc	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.818182
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	72305913	72305914	72305913	-	High_confidence	10	12	14	0.715035	2.950212	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	98698113	98698152	98698151	+	RAMPAGE_only	11	11	71	3.626247	4.970205	chr1	98698112	98698412	LINE|L2|L2c	-	chr1	98661722	98760500	SNX7|ENST00000306121.7	+	98661722,98684884,98691074,98691534,98695517,98698705,98701816,98738236,98760053	98661911,98685067,98691185,98691699,98695716,98698905,98701903,98738389,98760500	0.971831
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50756908	50756950	50756939	+	High_confidence	6	6	18	0.919330	3.734522	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.611111
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	2726956	2726966	2726956	+	High_confidence	10	12	27	1.378996	4.003856	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.518519
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	122164574	122164596	122164595	+	RAMPAGE_only	17	20	37	1.889735	3.729159	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122166767	122200083	MORN5|ENST00000486801.1	+	122166767,122174495,122199884	122166915,122174627,122200083	0.837838
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	109383486	109383504	109383499	-	High_confidence	2	3	11	0.561813	3.121928	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.909091
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	6248470	6248471	6248470	+	RAMPAGE_only	165	165	165	8.427195	5.793788	chr9	6248331	6248575	LTR|ERVL-MaLR|MSTD	+	chr9	6243174	6257982	MSTRG.23074.6	+	6243174,6250473,6251139,6252865,6253551,6254461,6255967	6243707,6250599,6251265,6252991,6253602,6254553,6257982	0.969697
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	143026447	143026485	143026456	+	RAMPAGE_only	21	28	125	6.384239	5.574252	chr2	143026366	143026854	LTR|ERV1|LTR1D	-	chr2	142877663	143042172	KYNU|ENST00000409512.5	+	142877663,142881344,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142877736,142881430,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143042172	0.816000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	24346937	24346964	24346937	+	RAMPAGE_only	4	4	21	1.072552	3.826875	chr8	24346931	24347022	LINE|L1|L1MC1	-	chr8	24331149	24355070	ADAM28|ENST00000521629.5	+	24331149,24332659,24335445,24339465,24341597,24343100,24343505,24349863,24351231,24351986,24354383	24331327,24332749,24335641,24339568,24341757,24343181,24343584,24349972,24351310,24352052,24355070	0.666667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	55618850	55618904	55618850	-	High_confidence	27	29	84	4.290208	5.460405	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.964286
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	23939527	23939539	23939538	+	High_confidence	3	4	9	0.459665	2.750000	chr2	23939241	23939827	LTR|ERV1|MER92B	-	chr2	23940418	24004909	UBXN2A|ENST00000309033.4	+	23940418,23958300,23971275,23976968,23982895,23984672,23999671	23940648,23958355,23971414,23977075,23983033,23984831,24004909	0.666667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	134485443	134485490	134485443	-	High_confidence	25	27	141	7.201421	5.951445	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.957447
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	26399414	26399448	26399442	-	High_confidence	11	11	30	1.532217	4.254196	chr7	26399411	26399720	DNA|hAT-Charlie|MER33	+	chr7	26372018	26399418	LOC105375304|NR_136272.1	-	26372018,26399340	26372568,26399418	0.700000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	39810033	39810118	39810033	-	High_confidence	20	20	143	7.303569	5.341222	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.706294
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	114759258	114759277	114759276	-	High_confidence	3	4	10	0.510739	3.169925	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.700000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	31587009	31587011	31587009	+	High_confidence	8	10	13	0.663961	2.688722	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.923077
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	23384824	23384866	23384865	-	High_confidence	10	10	20	1.021478	3.892407	chr21	23384605	23385150	LTR|ERVL|MLT2B3	-	chr21	23361103	23384861	D21S2088E|ENST00000262354.4	-	23361103,23364037,23372326,23372947,23384687	23362239,23364193,23372448,23373084,23384861	0.900000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	79631441	79631447	79631441	+	High_confidence	4	4	8	0.408591	2.750000	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	92536601	92536602	92536601	-	High_confidence	6	8	8	0.408591	2.521641	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.750000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	138347725	138347758	138347725	+	High_confidence	6	6	34	1.736513	3.973513	chr3	138347598	138347891	SINE|Alu|AluSx	-	chr3	138347696	138405533	MRAS|ENST00000289104.8	+	138347696,138372865,138397323,138398468,138400533,138402169	138348325,138373076,138397477,138398568,138400613,138405533	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	29970319	29970359	29970333	-	High_confidence	6	9	48	2.451548	4.610902	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	0.958333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	48868595	48868631	48868595	-	High_confidence	136	138	658	33.606632	7.213192	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.986322
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	174874418	174874454	174874418	+	High_confidence	8	11	28	1.430069	4.182006	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.642857
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	175658362	175658364	175658362	-	RAMPAGE_only	11	16	21	1.072552	3.446439	chr4	175658117	175658758	LINE|L1|L1MC1	+	chr4	175634707	175642082	GPM6A|ENST00000506219.5	-	175634707,175640128,175640752,175642023	175635057,175640194,175640829,175642082	0.904762
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	111601852	111601874	111601852	+	High_confidence	3	3	9	0.459665	2.750000	chr11	111601802	111601862	SINE|MIR|MIR3	+	chr11	111602390	111730853	SIK2|ENST00000304987.3	+	111602390,111616242,111620338,111688000,111700885,111701451,111703202,111704986,111712210,111719774,111720477,111720898,111721829,111722664,111723495	111602698,111616359,111620402,111688162,111701010,111701575,111703423,111705139,111712375,111720003,111720762,111721062,111721940,111722756,111730853	0.888889
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	99906524	99906561	99906556	-	High_confidence	3	3	15	0.766109	3.378783	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.933333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	62012758	62012796	62012758	+	RAMPAGE_only	2	2	10	0.510739	2.725481	chr2	62012779	62012863	DNA|hAT-Charlie|MER5B	+	chr2	61905646	62136247	COMMD1|ENST00000311832.5	+	61905646,62000700,62135830	61905858,62000982,62136247	0.700000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	90258079	90258080	90258079	+	RAMPAGE_only	10	12	12	0.612887	2.584963	chr14	90258077	90258330	SINE|MIR|MIRb	+	chr14	90256577	90272550	PSMC1|ENST00000543772.2	+	90256577,90259159,90263317,90263661,90264040,90265069,90268223,90269396,90270197,90272272	90256600,90259213,90263442,90263847,90264169,90265166,90268413,90269548,90270352,90272550	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	18566432	18566456	18566442	-	RAMPAGE_only	7	7	23	1.174700	3.849224	chr17	18563636	18567501	LINE|L1|L1PA16	+	chr17	18551027	18554265	CCDC144B|ENST00000609959.1	-	18551027,18551505,18553152,18553972	18551111,18551715,18553373,18554265	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	51354782	51354842	51354823	-	High_confidence	28	28	180	9.193303	5.319553	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.988889
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	2757780	2757837	2757819	+	High_confidence	2	2	12	0.612887	3.251629	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	32255825	32255841	32255825	+	High_confidence	4	4	14	0.715035	3.039149	chr6	32255571	32255986	LINE|L1|L1PA12	-	chr6	32255720	32390774	HCG23|ENST00000646550.1	+	32255720,32365779,32390213	32255998,32365839,32390774	0.857143
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	175787845	175787864	175787845	-	High_confidence	3	3	10	0.510739	2.947703	chr4	175787777	175787911	LINE|L2|L2a	+	chr4	175632936	175787676	GPM6A|NM_001261448.1	-	175632936,175640128,175640752,175651833,175673679,175701574,175787335	175635057,175640194,175640829,175651987,175673836,175701767,175787676	0.700000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	43557747	43557759	43557758	-	High_confidence	9	9	23	1.174700	4.277613	chr5	43557737	43557841	DNA|hAT-Charlie|MER33	-	chr5	43547727	43557758	PAIP1|ENST00000515338.1	-	43547727,43555829,43557350	43547913,43555961,43557758	0.695652
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	71745875	71745922	71745875	+	High_confidence	5	5	29	1.481143	4.164498	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.827586
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	143227910	143227911	143227910	+	RAMPAGE_only	12	13	15	0.766109	3.773557	chr2	143227673	143228117	LINE|L1|L1ME4a	-	chr2	143247289	143437042	ARHGAP15|ENST00000469117.5	+	143247289,143250510,143435600,143436912	143247404,143250600,143435699,143437042	0.600000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	134613031	134613097	134613031	-	High_confidence	9	9	45	2.298326	3.779113	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.511111
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	179517522	179517569	179517545	+	RAMPAGE_only	32	35	116	5.924573	6.191738	chr1	179516075	179517979	LINE|L1|L1PB1	-	chr1	179534492	179554713	AXDND1|ENST00000484455.1	+	179534492,179554511	179534962,179554713	0.706897
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	54066238	54066282	54066279	+	RAMPAGE_only	30	35	66	3.370878	4.903857	chr2	54066093	54066455	LTR|ERVL-MaLR|THE1D	+	chr2	54115272	54305300	ACYP2|NM_001320589.1	+	54115272,54135452,54138638,54267295,54304687	54115756,54135469,54138748,54267365,54305300	0.909091
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	8649422	8649448	8649447	+	RAMPAGE_only	3	3	6	0.306443	2.584963	chr20	8649465	8649857	LTR|ERVL-MaLR|MSTC	+	chr20	8658620	8968360	PLCB1|ENST00000487210.5	+	8658620,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448,8788632,8789517,8790174,8802055,8962195,8965089,8967219	8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788525,8788722,8789575,8790261,8802173,8963010,8965151,8968360	0.666667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	112332567	112332573	112332572	+	High_confidence	9	12	27	1.378996	4.023465	chr3	112332311	112332606	SINE|Alu|AluY	+	chr3	112332946	112362812	CD200|NM_001004196.3	+	112332946,112335942,112340901,112344961,112347557,112349711,112361542	112333224,112336017,112340983,112345288,112347830,112349819,112362812	0.629630
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	50226714	50226743	50226714	+	High_confidence	12	14	40	2.042956	4.496439	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	0.975000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	8308637	8308666	8308637	+	RAMPAGE_only	23	35	58	2.962287	4.017549	chr19	8308607	8308853	LINE|L2|L2a	+	chr19	8321157	8322946	RPS28|ENST00000449223.3	+	8321157,8321655,8322271	8321569,8322091,8322946	0.620690
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	42519283	42519288	42519287	+	RAMPAGE_only	7	7	12	0.612887	2.522055	chr22	42519127	42519409	LINE|L2|L2c	-	chr22	42553616	42558412	SERHL2|ENST00000447870.6	+	42553616,42554937,42555231,42555663,42556063,42556513,42558347	42553713,42555087,42555345,42555705,42556083,42556588,42558412	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	51815019	51815430	51815125	+	RAMPAGE_only	8	8	220	11.236260	5.727897	chr15	51814979	51815278	SINE|Alu|AluSq2	+	chr15	51751560	51816368	TMOD2|ENST00000249700.8	+	51751560,51766372,51768261,51773711,51776931,51781043,51782720,51798196,51806376,51808419	51751712,51766567,51768418,51773834,51777018,51781174,51782828,51798340,51806521,51816368	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	50271485	50271488	50271485	+	High_confidence	7	7	13	0.663961	3.238901	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	49867861	49867885	49867884	-	High_confidence	16	17	31	1.583291	4.413716	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49861203	49867886	PNKP|ENST00000322344.7	-	49861203,49861448,49861607,49861771,49862043,49862184,49862370,49862537,49862689,49863688,49863963,49864178,49864323,49865126,49866398,49867053,49867468	49861365,49861510,49861695,49861881,49862105,49862281,49862463,49862608,49862738,49863760,49864071,49864236,49864403,49865426,49866445,49867217,49867886	0.838710
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	123060117	123060220	123060183	-	High_confidence	15	15	250	12.768477	5.284109	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.704000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	66502611	66502741	66502611	-	High_confidence	28	29	298	15.220025	6.307787	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.929530
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	151539265	151539274	151539265	-	RAMPAGE_only	3	3	7	0.357517	2.584963	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.714286
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	158173024	158173025	158173024	-	High_confidence	60	60	79	4.034839	4.317050	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.962025
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	21140933	21140937	21140935	-	High_confidence	65	165	227	11.593777	6.726481	chr6	21140775	21141127	LTR|ERVL-MaLR|THE1A	-	chr6	21137096	21140989	MSTRG.19759.1	-	21137096,21139661,21140851	21138976,21139847,21140989	0.753304
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	33931129	33931147	33931146	+	High_confidence	3	5	12	0.612887	2.918296	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.916667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	91179462	91179526	91179462	-	High_confidence	164	169	682	34.832405	7.077253	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.922287
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	12802538	12802545	12802538	-	High_confidence	4	4	9	0.459665	3.000000	chr18	12802496	12804008	LINE|L1|L1MA6	+	chr18	12785480	12802153	PTPN2|ENST00000591901.5	-	12785480,12793481,12794383,12801969	12785844,12793574,12794485,12802153	0.666667
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	140700445	140700452	140700445	+	High_confidence	2061	2599	4624	236.165751	4.707706	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.984429
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	52569721	52569722	52569721	-	High_confidence	14	14	14	0.715035	3.521641	chr15	52569688	52569809	LINE|L2|L2	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	0.571429
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	101217580	101217595	101217580	-	High_confidence	2	2	7	0.357517	2.521641	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.857143
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	11587465	11587466	11587465	-	High_confidence	9	9	13	0.663961	3.085055	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	233691673	233691674	233691673	+	RAMPAGE_only	4	4	7	0.357517	2.521641	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233682367	233692347	UGT1A7|ENST00000485022.1	+	233682367,233689898,233690519	233682792,233689904,233692347	0.857143
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	66729245	66729344	66729279	-	High_confidence	36	41	261	13.330290	5.288364	chr11	66729233	66729349	SINE|MIR|MIRb	-	chr11	66715353	66729226	SPTBN2|ENST00000527010.1	-	66715353,66715829,66721083,66728740	66715395,66715981,66721262,66729226	0.996169
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	27599304	27599326	27599322	+	High_confidence	11	11	24	1.225774	4.334963	chr12	27599105	27599506	LTR|ERVL|MLT2B4	+	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.750000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	96155936	96155964	96155936	+	High_confidence	1	1	6	0.306443	2.584963	chr10	96155915	96156029	SINE|MIR|MIR3	-	chr10	96155342	96163761	ZNF518A|ENST00000534948.2	+	96155342,96156196	96156047,96163761	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	643625	643636	643635	-	High_confidence	8	8	20	1.021478	3.787144	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.950000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	96303166	96303300	96303166	-	RAMPAGE_only	12	12	54	2.757991	4.684991	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	107580245	107580267	107580264	+	High_confidence	774	778	3860	197.145285	7.254074	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618615	MSTRG.21653.7	+	107580264,107580758,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.936269
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	113117907	113117971	113117970	+	High_confidence	22	25	91	4.647726	4.917079	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.879121
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	22028392	22028425	22028392	+	RAMPAGE_only	9	9	65	3.319804	4.813085	chr8	22028341	22028629	SINE|Alu|AluSz	-	chr8	22025248	22036682	NPM2|ENST00000621538.4	+	22025248,22025435,22025646,22033129,22034108,22034509,22036492,22036637	22025306,22025521,22025772,22033223,22034275,22034544,22036526,22036682	0.600000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	193656716	193656717	193656716	+	RAMPAGE_only	8	9	10	0.510739	2.921928	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193638018	193697800	OPA1|ENST00000646544.1	+	193638018,193642764,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193638065,193642845,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193697800	0.900000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	32403105	32403221	32403148	-	RAMPAGE_only	9	12	57	2.911213	4.666742	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.964912
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	61517460	61517482	61517460	+	RAMPAGE_only	2	2	9	0.459665	2.750000	chr4	61517137	61518029	DNA|hAT-Charlie|Charlie17b	+	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.777778
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	41982019	41982064	41982063	-	RAMPAGE_only	5	5	23	1.174700	3.425119	chr19	41982026	41982072	LINE|CR1|L3	-	chr19	41966581	41993467	ATP1A3|NM_001256213.1	-	41966581,41967248,41967661,41968784,41969434,41970184,41970387,41975628,41976415,41977935,41978150,41978605,41981501,41981721,41981907,41984917,41985305,41985863,41986115,41987935,41988317,41988475,41993392	41966965,41967340,41967763,41968915,41969580,41970308,41970542,41975797,41976566,41978072,41978326,41978798,41981636,41981831,41982106,41985186,41985423,41985998,41986229,41988139,41988377,41988562,41993467	0.956522
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	72351177	72351226	72351196	-	High_confidence	12	12	64	3.268730	5.463054	chr4	72350303	72351253	LINE|L1|L1MEc	-	chr4	72280968	72351788	MSTRG.17730.1	-	72280968,72288750,72290854,72295653,72298276,72303916,72305986,72309396,72311047,72312290,72313676,72315857,72318571,72319331,72319857,72320713,72323013,72339493,72350793	72283704,72288868,72291062,72295786,72298442,72304080,72306067,72309520,72311181,72312466,72313822,72315971,72318704,72319475,72319963,72320870,72323097,72339693,72351788	0.953125
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	72351109	72351134	72351133	-	High_confidence	4	4	9	0.459665	2.947703	chr4	72350303	72351253	LINE|L1|L1MEc	-	chr4	72280968	72351788	MSTRG.17730.1	-	72280968,72288750,72290854,72295653,72298276,72303916,72305986,72309396,72311047,72312290,72313676,72315857,72318571,72319331,72319857,72320713,72323013,72339493,72350793	72283704,72288868,72291062,72295786,72298442,72304080,72306067,72309520,72311181,72312466,72313822,72315971,72318704,72319475,72319963,72320870,72323097,72339693,72351788	0.888889
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	33909085	33909140	33909085	-	High_confidence	3	4	15	0.766109	3.039149	chr21	33908880	33909038	DNA|hAT-Charlie|MER5A1	-	chr21	33903455	33909095	ATP5PO|ENST00000418933.1	-	33903455,33903934,33907340,33909081	33903656,33904021,33907453,33909095	0.933333
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	7566514	7566534	7566514	-	High_confidence	8	9	25	1.276848	3.923856	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.840000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	85682862	85682868	85682862	-	RAMPAGE_only	3	3	12	0.612887	3.418296	chr11	85682520	85682971	DNA|hAT-Tip100|MER115	+	chr11	85657563	85665138	CREBZF|NR_028027.1	-	85657563,85662388,85663523,85663814	85660597,85662457,85663601,85665138	0.500000
frontal_cortex_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50783214	50783215	50783214	+	High_confidence	8	8	10	0.510739	2.521928	chr22	50783102	50783247	SINE|Alu|AluJr	-	chr22	50783253	50799305	RPL23AP82|ENST00000467796.5	+	50783253,50785172,50798654	50783294,50785293,50799305	1.000000
gastrocnemius_medialis_female_adult_51_years	chr9	134406572	134406598	134406572	+	High_confidence	2	2	12	0.815211	2.913977	chr9	134406421	134406590	SINE|MIR|MIR	-	chr9	134406581	134440586	RXRA|NM_001291921.1	+	134406581,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134407492,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440586	0.916667
gastrocnemius_medialis_female_adult_51_years	chr10	95277306	95277369	95277368	-	RAMPAGE_only	17	17	66	4.483661	5.237452	chr10	95277337	95277664	SINE|Alu|AluSx	+	chr10	95263875	95273406	PDLIM1|ENST00000493949.1	-	95263875,95268777,95271632,95273036	95264063,95268862,95271784,95273406	0.666667
gastrocnemius_medialis_female_adult_51_years	chr17	77127869	77127873	77127872	+	High_confidence	14	14	27	1.834225	4.310443	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.629630
gastrocnemius_medialis_female_adult_51_years	chr1	155058772	155058785	155058772	+	High_confidence	4	4	9	0.611408	2.725481	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	1.000000
gastrocnemius_medialis_female_adult_51_years	chr1	225700929	225700989	225700988	+	High_confidence	2	3	13	0.883145	3.418296	chr1	225700876	225701240	LTR|ERVL-MaLR|MLT1L	-	chr1	225700683	225716480	STRG.2793.1	+	225700683,225710502,225716045	225701106,225710568,225716480	0.923077
gastrocnemius_medialis_female_adult_51_years	chr9	106450821	106450822	106450821	+	High_confidence	5	5	7	0.475540	2.521641	chr9	106450433	106450967	LTR|ERVL-MaLR|MLT1G1	+	chr9	106450815	106604795	LINC01505|ENST00000425709.1	+	106450815,106558471,106588376,106603755	106450888,106558583,106588464,106604795	0.857143
gastrocnemius_medialis_female_adult_51_years	chr9	121286591	121286609	121286608	+	High_confidence	13	13	23	1.562488	4.152391	chr9	121286415	121286709	LINE|L2|L2b	+	chr9	121286591	121332656	GSN|ENST00000545652.6	+	121286591,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286761,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332656	0.956522
gastrocnemius_medialis_female_adult_51_years	chr19	45424380	45424453	45424441	-	High_confidence	4	5	24	1.630422	3.754442	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	0.916667
gastrocnemius_medialis_female_adult_51_years	chr15	42415175	42415282	42415259	-	RAMPAGE_only	7	7	42	2.853239	4.365665	chr15	42415122	42415421	SINE|Alu|AluSq2	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	1.000000
gastrocnemius_medialis_female_adult_51_years	chr3	62150030	62150064	62150063	-	High_confidence	57	63	135	9.171125	6.120086	chr3	62149964	62150083	LINE|L2|L2a	+	chr3	62137128	62150046	STRG.6519.1	-	62137128,62149845	62138214,62150046	0.770370
gastrocnemius_medialis_female_adult_51_years	chr3	9973634	9973659	9973634	-	RAMPAGE_only	3	4	13	0.883145	3.251629	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9986682	STRG.5769.1	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9986682	0.923077
gastrocnemius_medialis_female_adult_51_years	chr7	7566500	7566534	7566514	-	High_confidence	165	175	450	30.570415	5.792511	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.960000
gastrocnemius_medialis_female_adult_51_years	chr10	72355126	72355146	72355145	-	High_confidence	7	7	13	0.883145	3.392747	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
gastrocnemius_medialis_female_adult_51_years	chr2	200889279	200889318	200889279	-	High_confidence	35	35	122	8.287979	5.715224	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889276	PPIL3|ENST00000465823.5	-	200870955,200876918,200881420,200885697,200887612,200888955	200871521,200877037,200881488,200885772,200887685,200889276	0.844262
gastrocnemius_medialis_female_adult_51_years	chr2	75641901	75641912	75641901	+	RAMPAGE_only	27	28	77	5.230938	5.413926	chr2	75641589	75641934	LTR|ERVL-MaLR|MLT1F2	-	chr2	75646782	75657860	MRPL19|ENST00000393909.6	+	75646782,75647101,75652141,75652522,75654735,75655063	75646910,75647219,75652260,75652657,75654917,75657860	0.857143
gastrocnemius_medialis_female_adult_51_years	chr5	95844109	95844135	95844109	+	High_confidence	7	7	46	3.124976	4.897300	chr5	95844156	95844245	LTR|ERVL-MaLR|MLT1K	+	chr5	95843917	95849855	STRG.10223.7	+	95843917,95848840	95847243,95849855	0.978261
gastrocnemius_medialis_female_adult_51_years	chr2	36584210	36584317	36584316	-	High_confidence	17	17	83	5.638543	4.493713	chr2	36584029	36584427	LTR|ERVL|LTR33	+	chr2	36555682	36584058	FEZ2|ENST00000464964.1	-	36555682,36558437,36578596,36581289,36583352,36584029	36555748,36558513,36578865,36581431,36583469,36584058	0.915663
gastrocnemius_medialis_female_adult_51_years	chr11	114553769	114553770	114553769	-	RAMPAGE_only	68	71	91	6.182017	5.688791	chr11	114553764	114553930	DNA|hAT-Blackjack|MER63A	+	chr11	114521715	114551201	NXPE1|ENST00000424269.5	-	114521715,114522878,114527839,114530174,114551102	114522503,114523091,114527901,114530908,114551201	0.516484
gastrocnemius_medialis_female_adult_51_years	chr8	27977125	27977129	27977125	-	RAMPAGE_only	13	16	24	1.630422	3.751629	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.916667
gastrocnemius_medialis_female_adult_51_years	chr12	91179462	91179549	91179462	-	High_confidence	879	913	3690	250.677406	7.406796	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.900813
gastrocnemius_medialis_female_adult_51_years	chr2	177888673	177888680	177888673	-	High_confidence	5	5	14	0.951080	3.039149	chr2	177888663	177888891	LTR|ERVL|LTR40c	+	chr2	177663872	177888685	STRG.4960.1	-	177663872,177675454,177680825,177697331,177701120,177711768,177727657,177728025,177769322,177816828,177817857,177820219,177840250,177875858,177888618	177663949,177675518,177680903,177697432,177701211,177711878,177727765,177728172,177769373,177816921,177817925,177820295,177840383,177875923,177888685	0.857143
gastrocnemius_medialis_female_adult_51_years	chr14	81427176	81427182	81427176	-	High_confidence	3	3	11	0.747277	2.846439	chr14	81426946	81427161	SINE|MIR|MIR	-	chr14	81260649	81427212	STON2|NM_033104.3	-	81260649,81276900,81370987,81395893,81398294,81427101	81270872,81278739,81371185,81396178,81398580,81427212	0.909091
gastrocnemius_medialis_female_adult_51_years	chr5	172958918	172958925	172958918	+	High_confidence	10	14	27	1.834225	3.231946	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	1.000000
gastrocnemius_medialis_female_adult_51_years	chr3	14047155	14047156	14047155	-	High_confidence	9	9	9	0.611408	2.947703	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14040965	14046974	STRG.5833.2	-	14040965,14046812	14041628,14046974	1.000000
gastrocnemius_medialis_female_adult_51_years	chr17	29643463	29643480	29643479	-	RAMPAGE_only	11	11	33	2.241830	4.077820	chr17	29643413	29643535	SINE|Alu|AluYj4	-	chr17	29625937	29761390	STRG.27121.5	-	29625937,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677741,29684684,29695523,29703062,29761390	0.696970
gastrocnemius_medialis_female_adult_51_years	chr12	102351402	102351519	102351517	-	High_confidence	54	60	101	6.861360	5.509855	chr12	102351438	102351949	LTR|ERVL|MLT2B3	+	chr12	102326689	102351521	STRG.22012.1	-	102326689,102338954,102341907,102343530,102350886	102327271,102339044,102342008,102343616,102351521	0.762376
gastrocnemius_medialis_female_adult_51_years	chr2	219425186	219425187	219425186	+	RAMPAGE_only	22	22	22	1.494554	3.845351	chr2	219424901	219425196	SINE|Alu|AluSg	-	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	1.000000
gastrocnemius_medialis_female_adult_51_years	chr3	111911611	111911614	111911613	+	High_confidence	4	9	9	0.611408	2.503258	chr3	111911655	111911757	DNA|hAT-Ac|OldhAT1	+	chr3	111911609	111976465	PHLDB2|ENST00000495180.1	+	111911609,111913318,111919071,111920281,111932268,111939474,111940534,111945267,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111911724,111913702,111919215,111920419,111932397,111939630,111940645,111945357,111954029,111962312,111966703,111967824,111969909,111973817,111976465	1.000000
gastrocnemius_medialis_female_adult_51_years	chr6	73169447	73169448	73169447	+	RAMPAGE_only	4	4	7	0.475540	2.521641	chr6	73169288	73169503	SINE|tRNA-RTE|MamSINE1	+	chr6	73120479	73198851	STRG.12049.8	+	73120479,73169745,73190572,73192564,73194451	73120577,73169854,73190704,73192691,73198851	0.857143
gastrocnemius_medialis_female_adult_51_years	chr5	91313698	91313699	91313698	-	High_confidence	5	5	8	0.543474	2.807355	chr5	91313501	91313807	SINE|Alu|AluY	+	chr5	91310626	91313675	LUCAT1|ENST00000649539.1	-	91310626,91313077,91313637	91312495,91313229,91313675	0.500000
gastrocnemius_medialis_female_adult_51_years	chr1	225701032	225701042	225701041	+	High_confidence	5	6	10	0.679343	2.721928	chr1	225700876	225701240	LTR|ERVL-MaLR|MLT1L	-	chr1	225700683	225716480	STRG.2793.1	+	225700683,225710502,225716045	225701106,225710568,225716480	1.000000
gastrocnemius_medialis_female_adult_51_years	chr1	150457313	150457335	150457334	+	RAMPAGE_only	4	4	11	0.747277	2.913977	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150364710	150473556	RPRD2|ENST00000369068.4	+	150364710,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150364919,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	1.000000
gastrocnemius_medialis_female_adult_51_years	chr1	33021440	33021456	33021455	-	RAMPAGE_only	3	3	8	0.543474	2.500000	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	1.000000
gastrocnemius_medialis_female_adult_51_years	chr10	80195810	80195813	80195810	-	RAMPAGE_only	40	47	70	4.755398	4.850546	chr10	80195647	80195982	LTR|ERVL-MaLR|THE1B	-	chr10	80155123	80204491	ANXA11|NM_001278408.1	-	80155123,80157640,80157966,80159099,80161934,80163348,80163533,80164052,80166083,80166889,80167225,80168968,80170799,80172806,80176106,80180940,80204238	80155912,80157763,80158025,80159195,80162028,80163405,80163613,80164143,80166197,80166984,80167313,80169358,80170915,80172869,80176155,80181455,80204491	0.942857
gastrocnemius_medialis_female_adult_51_years	chr5	154019754	154019792	154019754	-	RAMPAGE_only	8	8	22	1.494554	3.621928	chr5	154017469	154019854	LINE|L1|L1PB1	+	chr5	153991702	154038866	FAM114A2|ENST00000522858.5	-	153991702,153994918,153997802,154002250,154002846,154011240,154026398,154027175,154028148,154029488,154033790,154034277,154034743,154038292	153993110,153994972,153997875,154002390,154002969,154011320,154026522,154027334,154028283,154029580,154033883,154034377,154034967,154038866	0.863636
gastrocnemius_medialis_female_adult_51_years	chr12	53034021	53034028	53034021	+	RAMPAGE_only	10	10	18	1.222817	4.087463	chr12	53034069	53034237	DNA|hAT-Charlie|MER20B	+	chr12	53037725	53040352	EIF4B|ENST00000549592.1	+	53037725,53039629,53040142	53039343,53039702,53040352	0.611111
gastrocnemius_medialis_female_adult_51_years	chr2	229808254	229808271	229808270	-	RAMPAGE_only	4	4	8	0.543474	2.521641	chr2	229807972	229808231	SINE|Alu|AluSx3	-	chr2	229802250	229806149	TRIP12|ENST00000487178.1	-	229802250,229803570,229803998,229805729	229802459,229803689,229804227,229806149	0.625000
gastrocnemius_medialis_female_adult_51_years	chr19	50451949	50451994	50451986	+	RAMPAGE_only	3	3	16	1.086948	3.280639	chr19	50452004	50452188	SINE|MIR|MIRb	+	chr19	50432902	50466321	MYBPC2|ENST00000357701.5	+	50432902,50435160,50435775,50436011,50436616,50437472,50437658,50440879,50442180,50443493,50443710,50445879,50448224,50450828,50451279,50451863,50454019,50454264,50455107,50455509,50458586,50458917,50459110,50460039,50461541,50461899,50464345,50466194	50432972,50435250,50435862,50436160,50436734,50437521,50437718,50441076,50442313,50443618,50443816,50446052,50448390,50450935,50451309,50452003,50454179,50454369,50455296,50455644,50458754,50459006,50459306,50460179,50461701,50462036,50464532,50466321	1.000000
gastrocnemius_medialis_female_adult_51_years	chr21	28090313	28090410	28090313	+	High_confidence	16	17	113	7.676571	4.026916	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	1.000000
gastrocnemius_medialis_female_adult_51_years	chr1	8424702	8424718	8424702	-	High_confidence	11	12	33	2.241830	4.387199	chr1	8424658	8424711	LINE|L2|L2c	-	chr1	8364055	8425212	RERE|ENST00000488215.5	-	8364055,8364745,8365811,8422726,8424787	8364255,8364838,8365974,8422807,8425212	0.848485
gastrocnemius_medialis_female_adult_51_years	chr11	94873672	94873690	94873672	+	RAMPAGE_only	4	4	11	0.747277	2.921928	chr11	94873471	94873673	SINE|MIR|MIRb	-	chr11	94768370	94876753	AMOTL1|ENST00000433060.2	+	94768370,94795010,94799389,94821529,94830049,94831451,94850113,94853932,94859524,94864734,94865941,94869197,94870688	94768560,94795160,94800311,94821821,94830194,94831541,94850259,94854082,94859715,94864860,94866168,94869473,94876753	0.909091
gastrocnemius_medialis_female_adult_51_years	chr19	5680234	5680261	5680240	-	High_confidence	10	10	46	3.124976	4.987730	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.956522
gastrocnemius_medialis_female_adult_51_years	chr12	46266488	46266516	46266488	-	High_confidence	66	67	141	9.578730	5.881320	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.929078
gastrocnemius_medialis_female_adult_51_years	chr4	184814178	184814207	184814206	-	RAMPAGE_only	33	33	78	5.298872	5.031679	chr4	184814008	184814313	SINE|Alu|AluY	+	chr4	184755594	184812259	ACSL1|NM_001286708.1	-	184755594,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621,184768315,184770398,184773080,184773662,184773842,184776483,184776883,184780331,184783926,184788616,184803319,184812159	184757265,184757706,184757920,184760500,184762523,184763255,184764925,184765986,184766756,184768450,184770476,184773154,184773714,184773875,184776662,184776983,184780433,184783991,184788731,184803546,184812259	0.576923
gastrocnemius_medialis_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	22	22	22	1.494554	3.170135	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
gastrocnemius_medialis_female_adult_51_years	chr5	95838244	95838296	95838275	+	RAMPAGE_only	19	20	84	5.706478	5.104655	chr5	95838186	95838666	LTR|Gypsy|MamGyp-int	+	chr5	95843917	95860078	STRG.10223.3	+	95843917,95848840,95856877,95858803	95844567,95852714,95856981,95860078	0.892857
gastrocnemius_medialis_female_adult_51_years	chr11	43918945	43918957	43918945	+	High_confidence	5	5	18	1.222817	3.281036	chr11	43918742	43918963	SINE|MIR|MIR	-	chr11	43918803	43920266	ALKBH3|ENST00000529434.1	+	43918803,43919917	43919136,43920266	1.000000
gastrocnemius_medialis_female_adult_51_years	chrX	53585017	53585036	53585017	-	RAMPAGE_only	3	3	11	0.747277	3.121928	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.909091
gastrocnemius_medialis_female_adult_51_years	chr10	106648898	106648902	106648898	+	High_confidence	51	61	110	7.472768	5.961002	chr10	106648676	106649439	LTR|ERV1|LTR1	+	chr10	106648908	106676664	STRG.18771.1	+	106648908,106676144	106649145,106676664	0.654545
gastrocnemius_medialis_female_adult_51_years	chr1	54200000	54200030	54200018	-	High_confidence	4	4	17	1.154882	3.327820	chr1	54199790	54199971	SINE|MIR|MIRb	-	chr1	54172355	54200011	CYB5RL|ENST00000490863.5	-	54172355,54179148,54184160,54187651,54190737,54195418,54196368,54199975	54174822,54179352,54186286,54187882,54190896,54195715,54196491,54200011	0.941176
gastrocnemius_medialis_female_adult_51_years	chr11	58578130	58578145	58578132	-	High_confidence	8	11	21	1.426619	3.684184	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.857143
gastrocnemius_medialis_female_adult_51_years	chr7	123604072	123604110	123604109	+	RAMPAGE_only	4	4	12	0.815211	2.663533	chr7	123603369	123604299	LINE|CR1|L3	+	chr7	123601866	123637897	ASB15|NM_001290258.1	+	123601866,123604031,123608593,123614500,123616220,123616363,123617578,123624568,123627109,123628863,123629965,123636808	123601914,123604212,123608654,123614609,123616273,123616495,123617737,123624814,123627281,123629434,123630119,123637897	0.833333
gastrocnemius_medialis_female_adult_51_years	chr1	231501289	231501292	231501291	-	High_confidence	82	140	185	12.567837	5.867320	chr1	231501104	231501442	LTR|ERVL-MaLR|MLT1A0	-	chr1	231460959	231501333	STRG.2938.3	-	231460959,231475029,231501182	231462674,231475095,231501333	0.648649
gastrocnemius_medialis_female_adult_51_years	chr5	112219334	112219335	112219334	+	RAMPAGE_only	56	56	56	3.804318	4.831834	chr5	112219140	112219503	LTR|ERVL-MaLR|THE1D	+	chr5	112228282	112257309	AC104126.1|ENST00000504004.1	+	112228282,112249597,112250614,112256862	112228352,112249632,112250773,112257309	0.964286
gastrocnemius_medialis_female_adult_51_years	chr2	6918666	6918680	6918679	-	High_confidence	6	6	13	0.883145	3.085055	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.923077
gastrocnemius_medialis_female_adult_51_years	chr7	134549094	134549168	134549113	+	High_confidence	219	219	1090	74.048340	7.446508	chr7	134549070	134551552	LTR|ERV1|HERVS71-int	+	chr7	134549096	134579840	AKR1B15|NM_001080538.2	+	134549096,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579840	0.871560
gastrocnemius_medialis_female_adult_51_years	chr13	27445106	27445120	27445119	-	RAMPAGE_only	4	4	13	0.883145	3.251629	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.923077
gastrocnemius_medialis_female_adult_51_years	chr3	152317444	152317445	152317444	+	RAMPAGE_only	32	33	47	3.192910	4.044084	chr3	152317330	152317619	SINE|Alu|AluSz	-	chr3	152300197	152459302	MBNL1|ENST00000464596.5	+	152300197,152414940,152432716,152445281,152447619,152459270	152300367,152415111,152432920,152445539,152447773,152459302	0.829787
gastrocnemius_medialis_female_adult_51_years	chr11	123061128	123061257	123061217	-	High_confidence	9	9	160	10.869481	5.674229	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.968750
gastrocnemius_medialis_female_adult_51_years	chr1	116390246	116390266	116390246	+	RAMPAGE_only	4	4	8	0.543474	2.750000	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
gastrocnemius_medialis_female_adult_51_years	chrX	54989693	54989702	54989693	-	RAMPAGE_only	3	3	8	0.543474	2.521641	chrX	54989258	54989750	LINE|L1|L1ME3A	+	chrX	54933386	54994022	PFKFB1|ENST00000614686.1	-	54933386,54933820,54934946,54937594,54945438,54949074,54951904,54956152,54958305,54958850,54959826,54963256,54993910	54933462,54933885,54935009,54937724,54945543,54949221,54952112,54956274,54958362,54958925,54959893,54963382,54994022	0.750000
gastrocnemius_medialis_female_adult_51_years	chr3	29280832	29280866	29280838	-	High_confidence	10	10	33	2.241830	4.220168	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264199	29280885	STRG.6002.1	-	29264199,29274322,29280730	29264757,29274424,29280885	0.848485
gastrocnemius_medialis_female_adult_51_years	chr9	128921583	128921589	128921583	+	High_confidence	3	3	7	0.475540	2.807355	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921591	128942038	PHYHD1|ENST00000353176.9	+	128921591,128921929,128922282,128927037,128933781,128934010,128936447,128937756,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128937778,128940497,128940715,128941571,128942038	1.000000
gastrocnemius_medialis_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	414	419	419	28.464453	5.104220	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.954654
gastrocnemius_medialis_female_adult_51_years	chr15	84872199	84872245	84872219	+	RAMPAGE_only	3	3	10	0.679343	2.947703	chr15	84872013	84872720	LTR|ERVL|ERVL-E-int	-	chr15	84817390	84873482	STRG.25170.2	+	84817390,84827483,84838979,84839701,84856391,84859242,84859775,84860036,84862634,84863551,84864441,84867316,84868110	84817595,84827605,84839097,84840932,84858555,84859390,84859903,84860072,84862915,84863640,84864665,84867365,84873482	0.900000
gastrocnemius_medialis_female_adult_51_years	chr3	180870516	180870519	180870518	-	High_confidence	13	18	25	1.698356	4.213661	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180707588	180870178	LOC101928882|NR_109986.1	-	180707588,180711192,180711309,180725514,180733478,180734486,180737492,180747879,180748245,180751347,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180733682,180734606,180737814,180748043,180748319,180751410,180782124,180810470,180847624,180870178	0.560000
gastrocnemius_medialis_female_adult_51_years	chr10	79446850	79446869	79446868	-	RAMPAGE_only	23	23	39	2.649436	3.626200	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.974359
gastrocnemius_medialis_female_adult_51_years	chr1	1655395	1655445	1655444	-	RAMPAGE_only	8	12	42	2.853239	5.162430	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.547619
gastrocnemius_medialis_female_adult_51_years	chr9	33365176	33365199	33365198	+	High_confidence	5	5	10	0.679343	2.921928	chr9	33364991	33365299	SINE|Alu|AluSq	+	chr9	33365232	33367578	NFX1|ENST00000463421.1	+	33365232,33366628,33367514	33366009,33366774,33367578	0.500000
gastrocnemius_medialis_female_adult_51_years	chrX	38612622	38612648	38612622	+	RAMPAGE_only	117	139	424	28.804125	5.579869	chrX	38612500	38614189	LINE|L1|HAL1	-	chrX	38570682	38675816	TSPAN7|ENST00000488893.5	+	38570682,38666120,38671375,38674220,38675704	38570946,38666309,38671450,38674316,38675816	0.742925
gastrocnemius_medialis_female_adult_51_years	chr1	1505686	1505693	1505686	+	RAMPAGE_only	3	3	7	0.475540	2.521641	chr1	1504965	1505957	LTR|ERVK|LTR13	-	chr1	1503249	1509452	AL645728.2|ENST00000641974.1	+	1503249,1509204	1503661,1509452	0.714286
gastrocnemius_medialis_female_adult_51_years	chr9	129489101	129489126	129489125	+	High_confidence	12	15	35	2.377699	4.454822	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.828571
gastrocnemius_medialis_female_adult_51_years	chr15	65244454	65244455	65244454	-	RAMPAGE_only	9	9	11	0.747277	2.732159	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	1.000000
gastrocnemius_medialis_female_adult_51_years	chr16	87860517	87860529	87860517	-	High_confidence	4	4	14	0.951080	3.238901	chr16	87860400	87860678	LTR|ERV1|MER4B	+	chr16	87830022	87860673	STRG.26438.3	-	87830022,87834413,87836497,87837844,87838713,87839701,87840428,87841049,87851723,87860436	87833025,87834591,87836647,87837941,87838817,87839825,87840473,87841155,87851849,87860673	0.857143
gastrocnemius_medialis_female_adult_51_years	chr6	56839178	56839179	56839178	-	RAMPAGE_only	10	11	14	0.951080	3.334679	chr6	56839131	56839380	LTR|ERVL-MaLR|MLT1J	+	chr6	56476180	56843146	STRG.11980.2	-	56476180,56477344,56482049,56482682,56485311,56487103,56489489,56492226,56492933,56494009,56497378,56497855,56501079,56501519,56503996,56506442,56506666,56508528,56509641,56511196,56515449,56517197,56517500,56526360,56527492,56528840,56529447,56529973,56532343,56535121,56536778,56552183,56555344,56557318,56560293,56561307,56562137,56568468,56569855,56572099,56572746,56573678,56578813,56592181,56593662,56597739,56598475,56600068,56601442,56602881,56603204,56603563,56603836,56610426,56611507,56614355,56624529,56625156,56627203,56627998,56629249,56630244,56631210,56631882,56632853,56634131,56634461,56634800,56635588,56636556,56639258,56639449,56639695,56639928,56640142,56641946,56642409,56645865,56646086,56648569,56650925,56651131,56670640,56699652,56701887,56703710,56704279,56735227,56843054	56476337,56477488,56482178,56482877,56485471,56487273,56489609,56492433,56493089,56494180,56497507,56498053,56501235,56501693,56504098,56506544,56506789,56508755,56509873,56511400,56515668,56517305,56517620,56526567,56527734,56528925,56529774,56530133,56532510,56535292,56536940,56553655,56555840,56557518,56560423,56561549,56562200,56568595,56570012,56572266,56573064,56573887,56578937,56592358,56594193,56598006,56598709,56600221,56601676,56603031,56603420,56603713,56609344,56610562,56611596,56614484,56624628,56625264,56627287,56628161,56629443,56630383,56631389,56632040,56633037,56634258,56634616,56634953,56635714,56636652,56639363,56639611,56639773,56640057,56640605,56642101,56642503,56645993,56646182,56648689,56651032,56651244,56670807,56699745,56701965,56703746,56704369,56735289,56843146	0.928571
gastrocnemius_medialis_female_adult_51_years	chr9	121313983	121314023	121314002	+	RAMPAGE_only	9	9	47	3.192910	4.325346	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
gastrocnemius_medialis_female_adult_51_years	chr11	74071070	74071073	74071070	-	High_confidence	9	10	21	1.426619	3.746439	chr11	74070756	74071175	LINE|L2|L2c	+	chr11	74049518	74070869	C2CD3|ENST00000542484.1	-	74049518,74054606,74057405,74070505	74049542,74054671,74057544,74070869	0.857143
gastrocnemius_medialis_female_adult_51_years	chr2	178614863	178614965	178614946	-	RAMPAGE_only	36	36	452	30.706284	6.394218	chr2	178614941	178615012	DNA|hAT-Tip100|MER91B	-	chr2	178525988	178669012	STRG.7716.7	-	178525988,178527445,178528273,178528527,178529959,178530240,178535981,178536937,178537341,178538539,178538945,178539381,178540067,178541281,178542263,178542661,178543068,178543833,178544200,178545387,178545819,178546211,178546599,178547002,178547406,178549569,178549985,178550966,178551629,178553501,178553913,178554452,178554864,178556847,178557252,178557647,178558340,178559310,178576528,178576922,178577601,178577987,178578610,178578805,178579560,178579938,178580321,178581498,178581905,178582295,178582939,178583606,178584275,178584668,178585071,178586504,178587117,178587515,178587898,178588537,178591598,178591977,178592378,178592774,178593172,178593567,178593960,178594343,178595506,178597537,178597907,178598505,178598747,178599145,178599553,178600853,178601264,178601657,178601881,178602001,178602281,178603875,178604707,178604986,178605413,178607020,178607400,178607784,178608177,178608605,178609207,178609683,178610089,178610992,178611371,178611757,178612056,178612276,178612772,178613160,178613750,178614051,178614465,178614846,178615306,178615640,178616478,178616728,178617119,178617324,178617778,178618188,178618583,178619620,178619987,178620216,178620714,178621101,178621474,178621839,178622669,178624464,178625272,178629300,178630240,178630803,178631033,178632146,178632525,178632917,178633186,178633412,178633816,178634365,178634722,178635164,178635439,178635962,178636397,178637368,178639698,178640047,178640540,178641240,178642236,178644547,178645919,178646484,178647063,178647380,178649247,178649553,178649816,178650163,178650750,178651242,178651452,178651665,178651883,178652095,178652263,178652457,178652652,178652847,178653040,178653237,178653426,178653620,178653816,178654011,178654207,178654444,178654744,178654911,178658704,178659004,178659171,178662965,178663265,178663432,178663626,178663818,178664014,178664459,178664653,178664851,178666823,178667235,178667441,178667637	178527307,178527748,178528427,178529219,178530116,178535849,178536575,178537243,178537917,178538839,178539251,178539966,178540370,178541584,178542563,178542949,178543662,178544115,178544506,178545693,178546116,178546502,178546905,178547305,178549473,178549869,178550273,178551260,178553396,178553807,178554216,178554752,178555152,178557144,178557555,178558235,178558637,178576416,178576831,178577510,178577898,178578185,178578715,178579393,178579848,178580229,178580609,178581804,178582208,178582592,178583227,178583906,178584578,178584968,178585347,178586807,178587417,178587800,178588219,178591504,178591892,178592277,178592660,178593083,178593475,178593867,178594242,178594646,178595809,178597819,178598058,178598654,178599062,178599445,178599850,178601171,178601564,178601787,178601914,178602150,178602590,178604305,178604898,178605295,178605713,178607314,178607685,178608081,178608477,178608908,178609570,178609986,178610389,178611271,178611677,178611954,178612162,178612576,178613072,178613276,178613937,178614348,178614753,178614968,178615484,178615788,178616630,178617013,178617234,178617512,178618081,178618491,178618853,178619887,178620112,178620625,178620993,178621368,178621741,178622008,178622767,178624731,178625396,178629443,178630367,178630943,178631300,178632413,178632792,178633044,178633326,178633676,178634083,178634629,178634849,178635304,178635715,178636241,178636799,178637419,178639788,178640110,178640630,178641315,178642317,178644616,178646030,178646559,178647144,178647464,178649331,178649631,178649894,178650271,178650834,178651320,178651536,178651749,178651967,178652179,178652347,178652541,178652736,178652931,178653124,178653321,178653507,178653701,178653897,178654095,178654291,178654534,178654828,178654995,178658794,178659088,178659255,178663055,178663349,178663516,178663710,178663902,178664098,178664537,178664737,178664926,178666901,178667319,178667525,178669012	0.993363
gastrocnemius_medialis_female_adult_51_years	chr7	121062862	121062867	121062866	+	High_confidence	5	5	11	0.747277	3.095795	chr7	121062672	121063032	LTR|ERVL-MaLR|THE1B	+	chr7	121062764	121261918	CPED1|ENST00000423795.5	+	121062764,121064237,121097698,121099925,121124330,121125819,121127089,121128381,121130124,121133822,121136039,121140826,121141972,121236713,121244201,121261631	121062896,121064313,121097831,121100094,121124473,121125892,121127257,121128486,121130294,121133893,121136090,121141013,121142141,121236831,121244338,121261918	1.000000
gastrocnemius_medialis_female_adult_51_years	chr6	159681872	159682608	159681931	-	RAMPAGE_only	108	108	3636	247.008957	7.661616	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	0.996150
gastrocnemius_medialis_female_adult_51_years	chr10	99735683	99735695	99735694	+	RAMPAGE_only	3	3	8	0.543474	2.807355	chr10	99735424	99735707	SINE|Alu|AluSz6	-	chr10	99732395	99754550	CUTC|ENST00000370472.4	+	99732395,99736245,99739709,99743152,99744036,99747256,99750368,99754528	99732560,99736317,99739769,99743362,99744072,99747390,99750396,99754550	0.875000
gastrocnemius_medialis_female_adult_51_years	chr11	14337228	14337293	14337228	-	RAMPAGE_only	3	3	13	0.883145	3.026987	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14278938	14354500	RRAS2|ENST00000534746.5	-	14278938,14281601,14294470,14294759,14295767,14354412	14279424,14281720,14294579,14294862,14295855,14354500	0.846154
gastrocnemius_medialis_female_adult_51_years	chr6	147266055	147266056	147266055	+	RAMPAGE_only	7	7	9	0.611408	2.725481	chr6	147265752	147266762	LINE|L2|L2c	-	chr6	147204532	147384755	STXBP5|ENST00000321680.10	+	147204532,147205970,147235249,147239169,147260614,147262289,147267083,147278080,147291093,147310083,147311454,147313883,147314263,147314595,147315514,147316228,147324958,147327124,147334156,147339178,147339336,147353322,147359083,147363334,147364000,147373730,147382777,147384713	147204682,147206068,147235331,147239270,147260749,147262353,147267167,147278204,147291172,147310238,147311527,147314031,147314331,147314636,147315735,147316407,147325084,147327276,147334222,147339238,147339384,147353373,147359323,147363704,147364166,147373842,147382998,147384755	1.000000
gastrocnemius_medialis_female_adult_51_years	chr12	109262435	109262459	109262458	+	High_confidence	5	5	28	1.902159	3.624519	chr12	109262492	109262615	DNA|hAT-Tip100|MamRep4096	+	chr12	109263021	109266941	ACACB|ENST00000537279.1	+	109263021,109265109,109265388,109266235	109264386,109265280,109265525,109266941	1.000000
gastrocnemius_medialis_female_adult_51_years	chr7	107580245	107580267	107580264	+	High_confidence	629	632	3144	213.585302	6.903488	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.968830
gastrocnemius_medialis_female_adult_51_years	chr17	47067487	47067518	47067498	-	High_confidence	113	137	453	30.774218	5.808104	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.845475
gastrocnemius_medialis_female_adult_51_years	chr15	58259031	58259056	58259031	-	High_confidence	2	2	7	0.475540	2.807355	chr15	58258751	58259154	LTR|ERVL-MaLR|MLT1A1	-	chr15	58246182	58259051	ALDH1A2|ENST00000558524.5	-	58246182,58257425,58258141,58258829	58246302,58257555,58258239,58259051	0.571429
gastrocnemius_medialis_female_adult_51_years	chr10	95276708	95276801	95276721	-	RAMPAGE_only	6	7	69	4.687464	5.065640	chr10	95276590	95276825	SINE|MIR|MIR	-	chr10	95263875	95273406	PDLIM1|ENST00000493949.1	-	95263875,95268777,95271632,95273036	95264063,95268862,95271784,95273406	0.840580
gastrocnemius_medialis_female_adult_51_years	chr6	123106049	123106050	123106049	+	High_confidence	11	11	12	0.815211	2.594907	chr6	123103740	123107191	LINE|L1|L1PA8A	-	chr6	123105803	123112450	STRG.12474.1	+	123105803,123106134,123107201,123112060	123105945,123106288,123107598,123112450	0.916667
gastrocnemius_medialis_female_adult_51_years	chr2	29175269	29175353	29175269	+	High_confidence	113	113	412	27.988914	7.028964	chr2	29175307	29175605	LINE|CR1|L3	+	chr2	29175362	29181758	CLIP4|ENST00000481628.1	+	29175362,29181571	29175600,29181758	0.754854
gastrocnemius_medialis_female_adult_51_years	chr3	139344537	139344573	139344547	+	High_confidence	10	10	36	2.445633	4.173417	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	1.000000
gastrocnemius_medialis_female_adult_51_years	chr3	152395930	152395933	152395930	+	RAMPAGE_only	8	10	20	1.358685	2.610064	chr3	152395923	152396404	DNA|hAT-Charlie|MER1A	+	chr3	152300197	152459302	MBNL1|ENST00000464596.5	+	152300197,152414940,152432716,152445281,152447619,152459270	152300367,152415111,152432920,152445539,152447773,152459302	0.950000
gastrocnemius_medialis_female_adult_51_years	chr6	123105865	123105907	123105865	+	High_confidence	661	676	2133	144.903769	4.925306	chr6	123103740	123107191	LINE|L1|L1PA8A	-	chr6	123105803	123112450	STRG.12474.1	+	123105803,123106134,123107201,123112060	123105945,123106288,123107598,123112450	0.982185
gastrocnemius_medialis_female_adult_51_years	chr19	9140393	9140428	9140393	+	High_confidence	23	23	69	4.687464	5.253212	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.797101
gastrocnemius_medialis_female_adult_51_years	chr15	55911002	55911032	55911031	-	RAMPAGE_only	3	3	10	0.679343	3.121928	chr15	55910993	55911132	LINE|L2|L2c	+	chr15	55826921	55915654	NEDD4|ENST00000508871.5	-	55826921,55830513,55833007,55834037,55834226,55837788,55838106,55838508,55840446,55840605,55841933,55846968,55848371,55848520,55848805,55850541,55852423,55856130,55860406,55860660,55862912,55869578,55872414,55915283	55829999,55830586,55833104,55834145,55834286,55837849,55838180,55838604,55840517,55840727,55842163,55847034,55848430,55848575,55848886,55850742,55852543,55856196,55860574,55860778,55863079,55869681,55872476,55915654	0.800000
gastrocnemius_medialis_female_adult_51_years	chr18	34907122	34907126	34907122	-	RAMPAGE_only	117	129	293	19.904737	6.783595	chr18	34906945	34907321	LTR|ERVL-MaLR|THE1C	-	chr18	34892019	34893273	AC068506.1|ENST00000613388.1	-	34892019,34893159	34892450,34893273	0.583618
gastrocnemius_medialis_female_adult_51_years	chr12	689822	689823	689822	+	High_confidence	29	33	36	2.445633	4.294653	chr12	689484	689961	LTR|ERV1|MER51E	+	chr12	689833	724678	STRG.20711.2	+	689833,710974,724645	690037,711112,724678	0.722222
gastrocnemius_medialis_female_adult_51_years	chr10	15813483	15813504	15813503	-	RAMPAGE_only	6	6	17	1.154882	3.734522	chr10	15813202	15813686	LINE|L2|L2a	+	chr10	15778169	15818008	MINDY3|ENST00000378036.5	-	15778169,15782154,15786560,15789246,15796099,15816834	15779141,15782226,15786648,15789319,15796172,15818008	0.529412
gastrocnemius_medialis_female_adult_51_years	chr2	28165286	28165304	28165303	+	RAMPAGE_only	7	9	19	1.290751	3.221097	chr2	28165020	28165437	LINE|L2|L2b	-	chr2	27978267	28338901	STRG.3383.7	+	27978267,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28338449	27978374,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28338901	1.000000
gastrocnemius_medialis_female_adult_51_years	chr11	126207586	126207609	126207586	-	RAMPAGE_only	13	17	37	2.513567	4.182426	chr11	126207561	126207848	SINE|Alu|AluSz	+	chr11	126203321	126206512	RPUSD4|ENST00000530903.1	-	126203321,126204230,126205467,126205687	126203657,126204328,126205612,126206512	1.000000
gastrocnemius_medialis_female_adult_51_years	chr20	35153155	35153156	35153155	+	High_confidence	8	8	12	0.815211	3.084963	chr20	35152901	35155074	Retroposon|SVA|SVA_F	+	chr20	35153175	35177240	STRG.30682.1	+	35153175,35172088,35174701,35176167,35176697	35153567,35172224,35174953,35176446,35177240	0.750000
gastrocnemius_medialis_female_adult_51_years	chr11	113878754	113878755	113878754	-	RAMPAGE_only	8	8	11	0.747277	2.921928	chr11	113878589	113878950	LTR|ERVL-MaLR|THE1A	-	chr11	113797873	113875570	USP28|ENST00000003302.8	-	113797873,113801482,113803157,113803797,113804672,113804867,113806488,113808297,113809062,113812275,113813884,113815173,113817657,113823604,113827232,113829196,113830866,113831919,113833419,113834248,113840597,113841662,113852500,113854257,113875444	113799415,113801678,113803281,113803877,113804751,113805046,113806584,113808437,113809254,113812504,113813955,113815382,113817837,113823700,113827360,113829345,113830943,113831993,113833557,113834335,113840757,113841768,113852633,113854335,113875570	0.818182
gastrocnemius_medialis_female_adult_51_years	chr3	40464194	40464229	40464194	+	RAMPAGE_only	2	2	8	0.543474	2.500000	chr3	40463973	40464259	SINE|Alu|AluSx	-	chr3	40457291	40468587	RPL14|ENST00000338970.10	+	40457291,40457889,40458641,40461406,40461607,40461938	40457363,40457991,40458736,40461506,40461661,40468587	1.000000
gastrocnemius_medialis_female_adult_51_years	chr8	143281669	143281687	143281686	-	High_confidence	28	29	83	5.638543	4.881509	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.554217
gastrocnemius_medialis_female_adult_51_years	chr1	89272843	89272874	89272843	-	High_confidence	6	6	14	0.951080	3.378783	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	1.000000
gastrocnemius_medialis_female_adult_51_years	chr9	72363482	72363565	72363564	-	High_confidence	10	10	54	3.668450	4.718329	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.981481
gastrocnemius_medialis_female_adult_51_years	chr12	119179280	119179636	119179296	+	High_confidence	39	39	258	17.527038	5.983305	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.988372
gastrocnemius_medialis_female_adult_51_years	chr1	63547937	63548037	63547937	+	High_confidence	34	42	115	7.812439	5.828473	chr1	63547557	63548048	LTR|ERVL-MaLR|MLT1H	-	chr1	63548008	63571128	EFCAB7|ENST00000460678.6	+	63548008,63551047,63551724,63557112,63561708,63568309,63571020	63548350,63551090,63551834,63557247,63561857,63568519,63571128	0.808696
gastrocnemius_medialis_female_adult_51_years	chr20	50267477	50267500	50267487	+	High_confidence	3	3	10	0.679343	2.503258	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.900000
gastrocnemius_medialis_female_adult_51_years	chrX	155719045	155719046	155719045	-	RAMPAGE_only	5	5	8	0.543474	2.521641	chrX	155718901	155722240	LINE|L1|L1M1	+	chrX	155489010	155612961	TMLHE|NM_018196.3	-	155489010,155492356,155506897,155511672,155513985,155524455,155545095,155612791	155491666,155492495,155507134,155511792,155514265,155524632,155545277,155612961	0.750000
gastrocnemius_medialis_female_adult_51_years	chr12	102351221	102351257	102351221	-	High_confidence	20	22	53	3.600516	4.597082	chr12	102350797	102351351	LTR|ERVL|MLT2A2	-	chr12	102326689	102351521	STRG.22012.1	-	102326689,102338954,102341907,102343530,102350886	102327271,102339044,102342008,102343616,102351521	0.792453
gastrocnemius_medialis_female_adult_51_years	chr2	75641804	75641811	75641810	+	RAMPAGE_only	4	4	9	0.611408	2.503258	chr2	75641589	75641934	LTR|ERVL-MaLR|MLT1F2	-	chr2	75646782	75657860	MRPL19|ENST00000393909.6	+	75646782,75647101,75652141,75652522,75654735,75655063	75646910,75647219,75652260,75652657,75654917,75657860	1.000000
gastrocnemius_medialis_female_adult_51_years	chr16	27229197	27229235	27229197	-	RAMPAGE_only	5	7	25	1.698356	3.593270	chr16	27229101	27229466	LINE|L2|L2b	+	chr16	27225024	27268741	NSMCE1|ENST00000565070.5	-	27225024,27225725,27233000,27234187,27235177,27257434,27268705	27225236,27226836,27233147,27234265,27235299,27257581,27268741	1.000000
gastrocnemius_medialis_female_adult_51_years	chr17	21075853	21075856	21075855	+	High_confidence	13	21	25	1.698356	3.284889	chr17	21075733	21075870	LINE|L2|L2a	-	chr17	21075574	21090615	STRG.27016.1	+	21075574,21084760,21090267	21075957,21084884,21090615	0.960000
gastrocnemius_medialis_female_adult_51_years	chr17	4143196	4143215	4143199	+	High_confidence	129	139	269	18.274315	5.763834	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.977695
gastrocnemius_medialis_female_adult_51_years	chr2	173223897	173224251	173224250	+	RAMPAGE_only	11	11	165	11.209152	6.116152	chr2	173223967	173224276	LINE|L2|L2a	-	chr2	173075841	173227146	MAP3K20|ENST00000338983.7	+	173075841,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173221149	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173227146	0.987879
gastrocnemius_medialis_female_adult_51_years	chr1	246611060	246611083	246611082	+	RAMPAGE_only	4	4	10	0.679343	3.169925	chr1	246610312	246611413	LINE|L1|L1MB4	-	chr1	246569541	246668584	STRG.3048.1	+	246569541,246591511,246618257,246621428,246631893,246633923,246634472,246641748,246641940,246647138,246660198,246665699	246569990,246591941,246618401,246621634,246631924,246634010,246634587,246641770,246642037,246648037,246660334,246668584	0.900000
gastrocnemius_medialis_female_adult_51_years	chr16	88883375	88883392	88883391	+	High_confidence	12	12	25	1.698356	4.188722	chr16	88883339	88883513	LTR|ERV1|MER57B2	+	chr16	88883386	88887131	STRG.26479.2	+	88883386,88885741,88886727	88884844,88885956,88887131	0.960000
gastrocnemius_medialis_female_adult_51_years	chr11	123060115	123060256	123060255	-	High_confidence	17	18	222	15.081405	5.307671	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.680180
gastrocnemius_medialis_female_adult_51_years	chr9	120534028	120534050	120534028	-	RAMPAGE_only	4	4	17	1.154882	3.690117	chr9	120533823	120534313	LINE|L2|L2c	+	chr9	120518599	120532555	CDK5RAP2|ENST00000482047.1	-	120518599,120524985,120527805,120528743,120529977,120532466	120518645,120525078,120527925,120528797,120530140,120532555	0.647059
gastrocnemius_medialis_female_adult_51_years	chr12	55710131	55710145	55710131	+	High_confidence	6	6	14	0.951080	2.873141	chr12	55710078	55710380	SINE|Alu|AluSx1	+	chr12	55709945	55719670	STRG.21519.4	+	55709945,55715989,55716932,55719090,55719498	55710402,55716196,55717005,55719223,55719670	0.928571
gastrocnemius_medialis_female_adult_51_years	chr12	102351004	102351053	102351052	-	High_confidence	3	3	12	0.815211	2.663533	chr12	102350797	102351351	LTR|ERVL|MLT2A2	-	chr12	102326689	102351521	STRG.22012.1	-	102326689,102338954,102341907,102343530,102350886	102327271,102339044,102342008,102343616,102351521	0.666667
gastrocnemius_medialis_female_adult_51_years	chr5	91313195	91313208	91313207	-	High_confidence	5	5	12	0.815211	3.084963	chr5	91313138	91313324	LINE|RTE-BovB|MamRTE1	+	chr5	91310626	91313675	LUCAT1|ENST00000649539.1	-	91310626,91313077,91313637	91312495,91313229,91313675	0.750000
gastrocnemius_medialis_female_adult_51_years	chr7	102822458	102822459	102822458	-	RAMPAGE_only	8	8	11	0.747277	3.027169	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.909091
gastrocnemius_medialis_female_adult_51_years	chr8	144063438	144063498	144063457	-	High_confidence	8	8	38	2.581502	4.859641	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144052769	144063557	STRG.16047.2	-	144052769,144052982,144053208,144054560,144054811,144055028,144055787,144056146,144056384,144056617,144056947,144057207,144057447,144057855,144058009,144058238,144058495,144058772,144058979,144059598,144059861,144063303	144052900,144053129,144053393,144054735,144054913,144055189,144055939,144056259,144056523,144056755,144057118,144057320,144057713,144057923,144058148,144058404,144058691,144058896,144059079,144059790,144060085,144063557	0.921053
gastrocnemius_medialis_female_adult_51_years	chr3	152395902	152395903	152395902	+	RAMPAGE_only	6	6	8	0.543474	2.500000	chr3	152395923	152396404	DNA|hAT-Charlie|MER1A	+	chr3	152300197	152459302	MBNL1|ENST00000464596.5	+	152300197,152414940,152432716,152445281,152447619,152459270	152300367,152415111,152432920,152445539,152447773,152459302	0.750000
gastrocnemius_medialis_female_adult_51_years	chr6	105176254	105176255	105176254	-	High_confidence	8	8	8	0.543474	2.500000	chr6	105176149	105176515	LTR|ERV1|MER57D	-	chr6	105157899	105176255	POPDC3|NR_024539.1	-	105157899,105159710,105161795,105176192	105158751,105159819,105162160,105176255	1.000000
gastrocnemius_medialis_female_adult_51_years	chr16	68267936	68267937	68267936	+	High_confidence	73	74	77	5.230938	5.189400	chr16	68267617	68268452	LTR|ERVL|MER21B	+	chr16	68267925	68274811	STRG.26233.16	+	68267925,68273817,68274690	68268089,68273904,68274811	0.571429
gastrocnemius_medialis_female_adult_51_years	chr1	226542738	226542739	226542738	-	High_confidence	71	75	94	6.385820	5.223863	chr1	226542461	226543018	LTR|ERVL|LTR66	-	chr1	226536957	226542756	STRG.2818.2	-	226536957,226542638	226538699,226542756	0.925532
gastrocnemius_medialis_female_adult_51_years	chr19	55280218	55280245	55280218	-	High_confidence	5	7	22	1.494554	3.065957	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.909091
gastrocnemius_medialis_female_adult_51_years	chr16	8842153	8842154	8842153	+	High_confidence	11	11	17	1.154882	3.875000	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.941176
gastrocnemius_medialis_female_adult_51_years	chr20	20088509	20088598	20088597	-	High_confidence	24	34	90	6.114083	5.247631	chr20	20088284	20088660	LTR|ERVL-MaLR|THE1C	-	chr20	20084076	20089233	STRG.30550.6	-	20084076,20088366,20088851	20084589,20088435,20089233	0.633333
gastrocnemius_medialis_female_adult_51_years	chr2	201122573	201122596	201122589	+	High_confidence	104	130	232	15.760748	6.539895	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201122576	201163973	STRG.5196.6	+	201122576,201129728,201133028,201135971,201140356,201145377,201149002,201149753,201160431,201163834	201122747,201130146,201133134,201136107,201140439,201145432,201149052,201149835,201160942,201163973	0.978448
gastrocnemius_medialis_female_adult_51_years	chrX	103627051	103627092	103627089	+	High_confidence	7	7	15	1.019014	3.506891	chrX	103626903	103627134	SINE|MIR|MIR	-	chrX	103627099	103630217	STRG.32849.1	+	103627099,103628405,103629493,103629884	103627154,103628793,103629561,103630217	0.933333
gastrocnemius_medialis_female_adult_51_years	chr4	184804544	184804555	184804554	-	RAMPAGE_only	6	9	11	0.747277	2.646439	chr4	184804298	184804602	SINE|Alu|AluSx1	+	chr4	184755594	184805788	ACSL1|NM_001286710.1	-	184755594,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621,184768315,184770254,184773080,184773662,184773842,184776483,184776883,184780331,184783926,184788616,184803319,184805526	184757265,184757706,184757920,184760500,184762523,184763255,184764925,184765986,184766756,184768450,184770332,184773154,184773714,184773875,184776662,184776983,184780433,184783991,184788731,184803546,184805788	0.909091
gastrocnemius_medialis_female_adult_51_years	chr12	49013477	49013519	49013477	-	RAMPAGE_only	41	48	114	7.744505	5.372738	chr12	49013243	49013543	SINE|Alu|AluJb	-	chr12	49004571	49018415	PRKAG1|ENST00000552463.5	-	49004571,49004963,49005119,49005305,49005461,49005742,49013061,49016606,49018333	49004633,49005018,49005165,49005364,49005543,49005852,49013110,49016839,49018415	0.517544
gastrocnemius_medialis_female_adult_51_years	chr10	6737337	6737384	6737337	+	High_confidence	4	8	27	1.834225	4.023465	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.925926
gastrocnemius_medialis_female_adult_51_years	chr1	201427175	201427176	201427175	-	RAMPAGE_only	49	49	49	3.328779	4.802987	chr1	201427119	201427295	SINE|MIR|MIR	-	chr1	201408863	201429866	TNNI1|ENST00000336092.8	-	201408863,201410325,201411356,201413031,201414517,201415212,201417115,201417782,201421672,201427174,201428837,201429698	201409250,201410435,201411533,201413121,201414649,201415254,201417119,201417812,201421726,201427293,201429274,201429866	1.000000
gastrocnemius_medialis_female_adult_51_years	chr3	134485443	134485478	134485443	-	High_confidence	8	8	20	1.358685	3.826875	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.950000
gastrocnemius_medialis_female_adult_51_years	chr4	2867850	2867858	2867850	+	High_confidence	4	4	8	0.543474	2.750000	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
gastrocnemius_medialis_female_adult_51_years	chr4	123894758	123894775	123894758	+	High_confidence	6	6	14	0.951080	3.521641	chr4	123894654	123894827	SINE|Alu|AluYc	-	chr4	123894774	123924162	STRG.8922.1	+	123894774,123924096	123895002,123924162	0.642857
gastrocnemius_medialis_female_adult_51_years	chr12	883828	883831	883828	+	RAMPAGE_only	2	3	8	0.543474	3.000000	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	753055	907956	STRG.20726.5	+	753055,813641,827041,830002,857160,859244,861012,862082,871264,878211,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846	754324,813814,827262,830160,857249,859464,861343,862270,871348,878361,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,907956	1.000000
gastrocnemius_medialis_female_adult_51_years	chr2	201115990	201116039	201116038	+	High_confidence	3	3	11	0.747277	2.845351	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.818182
gastrocnemius_medialis_female_adult_51_years	chr6	126337596	126337597	126337596	+	RAMPAGE_only	5	5	8	0.543474	2.750000	chr6	126337372	126339339	LINE|L2|L2a	-	chr6	126339788	126483320	CENPW|NR_104462.1	+	126339788,126346204,126433550,126480577	126340399,126346318,126433625,126483320	1.000000
gastrocnemius_medialis_female_adult_51_years	chr3	135965673	135965749	135965748	+	High_confidence	29	29	213	14.469997	6.147898	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.981221
gastrocnemius_medialis_female_adult_51_years	chr16	2757805	2757815	2757814	+	High_confidence	3	3	10	0.679343	2.503258	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.900000
gastrocnemius_medialis_female_adult_51_years	chr8	80485592	80485619	80485592	+	High_confidence	7	7	13	0.883145	3.026987	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.615385
gastrocnemius_medialis_female_adult_51_years	chr5	95844372	95844465	95844458	+	High_confidence	47	63	203	13.790654	5.219777	chr5	95844427	95844652	LTR|ERVL-MaLR|MLT1K	+	chr5	95843917	95849855	STRG.10223.7	+	95843917,95848840	95847243,95849855	0.965517
gastrocnemius_medialis_female_adult_51_years	chr5	16461857	16461859	16461858	-	RAMPAGE_only	4	7	9	0.611408	2.750000	chr5	16460895	16461922	LINE|L2|L2a	-	chr5	16451518	16465785	ZNF622|NM_033414.2	-	16451518,16453012,16458516,16463107,16463481,16465040	16451784,16453156,16458629,16463270,16463742,16465785	0.888889
gastrocnemius_medialis_female_adult_51_years	chr8	123502031	123503406	123502569	-	RAMPAGE_only	27	28	1545	104.958426	8.059251	chr8	123502465	123502535	SINE|Alu|AluJo	-	chr8	123497886	123532143	FBXO32|NM_148177.2	-	123497886,123504603,123506391,123513197,123514239,123531897	123503462,123504747,123506574,123513382,123514333,123532143	1.000000
gastrocnemius_medialis_female_adult_51_years	chr7	134549014	134549015	134549014	+	High_confidence	83	86	106	7.201031	5.614621	chr7	134548478	134549049	LTR|ERV1|LTR6A	+	chr7	134549096	134579840	AKR1B15|NM_001080538.2	+	134549096,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579840	0.924528
gastrocnemius_medialis_female_adult_51_years	chr1	38022219	38022222	38022219	+	RAMPAGE_only	27	31	51	3.464647	4.077906	chr1	38022198	38022365	SINE|MIR|MIR3	+	chr1	38016582	38023801	UTP11|ENST00000488453.1	+	38016582,38018463,38019058,38019252,38022698,38023544	38017770,38018577,38019152,38019383,38022809,38023801	0.901961
gastrocnemius_medialis_female_adult_51_years	chr20	45825343	45825406	45825343	-	RAMPAGE_only	9	10	51	3.464647	4.365971	chr20	45825287	45825591	SINE|Alu|AluSx	-	chr20	45823213	45827314	TNNC2|NM_003279.2	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827314	1.000000
gastrocnemius_medialis_female_adult_51_years	chr10	75109324	75109348	75109330	+	RAMPAGE_only	10	11	41	2.785305	4.603056	chr10	75109354	75109498	SINE|MIR|MIRb	+	chr10	75111470	75176831	SAMD8|ENST00000372690.7	+	75111470,75150513,75164644,75168540,75176065,75176387	75111722,75151106,75164740,75168658,75176216,75176831	0.951220
gastrocnemius_medialis_female_adult_51_years	chr6	155315049	155315059	155315056	-	High_confidence	5	6	19	1.290751	3.683542	chr6	155314941	155315144	SINE|MIR|MIRb	+	chr6	155257508	155314484	TFB1M|ENST00000367166.4	-	155257508,155260272,155285157,155296952,155298476,155311187,155314295	155258082,155260400,155285277,155297104,155298585,155311339,155314484	0.842105
gastrocnemius_medialis_female_adult_51_years	chr6	159716424	159716456	159716424	+	High_confidence	5	5	25	1.698356	4.243856	chr6	159716167	159716546	LTR|ERVL-MaLR|MLT1L	-	chr6	159716408	159755713	STRG.13004.1	+	159716408,159726657,159736257,159738989,159742087,159743664,159748190,159753459,159755027	159716596,159726853,159736295,159739045,159742146,159743792,159748369,159753614,159755713	0.680000
gastrocnemius_medialis_female_adult_51_years	chr14	80455257	80455292	80455291	+	High_confidence	23	23	68	4.619529	5.031956	chr14	80455279	80455449	LTR|ERVL-MaLR|MLT1J	+	chr14	80455245	80472996	STRG.23910.1	+	80455245,80464769,80471859	80455389,80464956,80472996	0.750000
gastrocnemius_medialis_female_adult_51_years	chr3	197751561	197751573	197751561	+	RAMPAGE_only	8	8	17	1.154882	3.454822	chr3	197751358	197751631	SINE|Alu|AluSz6	+	chr3	197750389	197784446	FYTTD1|NR_027840.1	+	197750389,197756425,197768438,197770131,197773402,197774148,197776926,197778337,197781810	197750822,197756557,197768587,197770244,197773499,197774210,197777001,197778464,197784446	1.000000
gastrocnemius_medialis_female_adult_51_years	chr15	92619811	92619855	92619854	-	High_confidence	7	7	26	1.766291	3.459148	chr15	92619758	92620090	DNA|hAT-Charlie|MER58B	-	chr15	92617442	92619889	STRG.25245.3	-	92617442,92619706	92619459,92619889	0.923077
gastrocnemius_medialis_female_adult_51_years	chr7	121060776	121060777	121060776	+	High_confidence	149	150	151	10.258073	5.096259	chr7	121059787	121061189	LTR|ERV1|LTR12C	+	chr7	121060757	121097815	STRG.14397.8	+	121060757,121064237,121097698	121061204,121064313,121097815	0.953642
gastrocnemius_medialis_female_adult_51_years	chr7	129914912	129914916	129914915	-	RAMPAGE_only	14	16	33	2.241830	4.413910	chr7	129914762	129914983	SINE|MIR|MIR	+	chr7	129830743	129937732	UBE2H|ENST00000649897.1	-	129830743,129839206,129857510,129858901,129879567,129880894,129924879,129925527,129937707	129835061,129839335,129857563,129858941,129879642,129880971,129924943,129925549,129937732	0.969697
gastrocnemius_medialis_female_adult_51_years	chr6	79631273	79631329	79631328	+	High_confidence	16	16	48	3.260844	4.942783	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.979167
gastrocnemius_medialis_female_adult_51_years	chr3	179785764	179785866	179785836	+	RAMPAGE_only	6	6	36	2.445633	4.572431	chr3	179785740	179785926	SINE|MIR|MIRc	+	chr3	179653144	179789401	USP13|NM_003940.2	+	179653144,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653393,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179789401	1.000000
gastrocnemius_medialis_female_adult_51_years	chr16	50668375	50668407	50668402	-	High_confidence	21	23	62	4.211924	4.127882	chr16	50668230	50668595	DNA|hAT-Charlie|MER113	+	chr16	50666563	50668413	STRG.26014.1	-	50666563,50667908,50668248	50666916,50668041,50668413	0.951613
gastrocnemius_medialis_female_adult_51_years	chr12	10710653	10710654	10710653	-	High_confidence	34	34	34	2.309765	3.939829	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.529412
gastrocnemius_medialis_female_adult_51_years	chr11	65382789	65382790	65382789	-	High_confidence	5	6	8	0.543474	2.521641	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375191	65382674	SLC25A45|NM_182556.3	-	65375191,65376817,65379375,65379866,65380131,65381914,65382485	65376675,65377076,65379561,65379938,65380175,65381969,65382674	0.750000
gastrocnemius_medialis_female_adult_51_years	chr19	38376013	38376033	38376032	+	RAMPAGE_only	69	71	198	13.450983	5.336977	chr19	38375972	38376110	SINE|MIR|MIR	-	chr19	38374758	38383824	PSMD8|ENST00000602911.5	+	38374758,38376159,38376351,38379239,38380898,38382116,38383252	38374961,38376232,38376454,38379405,38380999,38382228,38383824	0.969697
gastrocnemius_medialis_female_adult_51_years	chr18	80148048	80148049	80148048	+	High_confidence	7	7	7	0.475540	2.807355	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	1.000000
gastrocnemius_medialis_female_adult_51_years	chrX	5726324	5726325	5726324	-	High_confidence	18	19	20	1.358685	2.641121	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.850000
gastrocnemius_medialis_female_adult_51_years	chr15	90762331	90762407	90762400	+	High_confidence	5	5	33	2.241830	4.513795	chr15	90762254	90762815	LINE|L2|L2b	-	chr15	90762395	90811327	BLM|ENST00000560136.5	+	90762395,90762965,90766909,90769132,90769437,90782821,90784920,90790648,90794166,90798189,90803520,90804166,90809136,90811204	90762422,90763157,90767023,90769231,90769586,90782928,90785081,90790844,90794357,90798337,90803720,90804359,90809259,90811327	0.787879
gastrocnemius_medialis_female_adult_51_years	chr10	95273881	95273882	95273881	-	High_confidence	8	8	8	0.543474	3.000000	chr10	95273549	95273887	LINE|RTE-X|L4_C_Mam	+	chr10	95263875	95273406	PDLIM1|ENST00000493949.1	-	95263875,95268777,95271632,95273036	95264063,95268862,95271784,95273406	0.625000
gastrocnemius_medialis_female_adult_51_years	chr9	39809803	39809865	39809858	-	High_confidence	11	17	67	4.551595	3.866213	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803703	39810013	STRG.16500.2	-	39803703,39809485,39809730	39803859,39809615,39810013	0.895522
gastrocnemius_medialis_female_adult_51_years	chr12	45292684	45292728	45292685	+	High_confidence	16	23	63	4.279858	5.316942	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.952381
gastrocnemius_medialis_female_adult_51_years	chr8	144063538	144063555	144063554	-	High_confidence	4	5	14	0.951080	3.521641	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144052769	144063557	STRG.16047.2	-	144052769,144052982,144053208,144054560,144054811,144055028,144055787,144056146,144056384,144056617,144056947,144057207,144057447,144057855,144058009,144058238,144058495,144058772,144058979,144059598,144059861,144063303	144052900,144053129,144053393,144054735,144054913,144055189,144055939,144056259,144056523,144056755,144057118,144057320,144057713,144057923,144058148,144058404,144058691,144058896,144059079,144059790,144060085,144063557	0.928571
gastrocnemius_medialis_female_adult_51_years	chr2	10844369	10844374	10844369	+	RAMPAGE_only	4	4	8	0.543474	2.750000	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10878266	10885118	LOC101929733|NR_110575.1	+	10878266,10884833	10878444,10885118	0.875000
gastrocnemius_medialis_female_adult_51_years	chr10	30999487	30999520	30999519	-	High_confidence	10	12	29	1.970093	3.958229	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.551724
gastrocnemius_medialis_female_adult_51_years	chr1	37152535	37152555	37152535	-	High_confidence	3	3	9	0.611408	2.725481	chr1	37152131	37152598	LINE|L2|L2c	+	chr1	37098035	37152683	STRG.651.1	-	37098035,37103541,37152431	37102501,37103878,37152683	0.777778
gastrocnemius_medialis_female_adult_51_years	chr1	201384025	201384038	201384037	-	High_confidence	8	8	13	0.883145	3.085055	chr1	201383891	201384270	LINE|L2|L2c	+	chr1	201381017	201383811	STRG.2532.1	-	201381017,201382251,201382652,201383073,201383316,201383706	201381893,201382326,201382739,201383211,201383389,201383811	0.615385
gastrocnemius_medialis_female_adult_51_years	chr11	107719678	107719701	107719695	-	High_confidence	2566	2695	4374	297.144438	5.506346	chr11	107719646	107719884	LTR|Gypsy?|LTR88c	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.992227
gastrocnemius_medialis_female_adult_51_years	chr16	84139251	84139299	84139298	-	RAMPAGE_only	3	3	16	1.086948	3.323231	chr16	84139153	84139637	LTR|ERVL-MaLR|MLT1D	+	chr16	84122280	84145169	STRG.26394.2	-	84122280,84129547,84129985,84131101,84135543,84139222,84145079	84124728,84129775,84130431,84131327,84135605,84139306,84145169	0.812500
gastrocnemius_medialis_female_adult_51_years	chr20	18794077	18794086	18794077	+	High_confidence	14	14	32	2.173896	4.750000	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
gastrocnemius_medialis_female_adult_51_years	chr7	80594470	80594508	80594489	+	RAMPAGE_only	9	9	42	2.853239	4.731309	chr7	80594254	80594543	SINE|Alu|AluJo	-	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.738095
gastrocnemius_medialis_female_adult_51_years	chr3	115110180	115110207	115110206	-	RAMPAGE_only	22	23	35	2.377699	4.593429	chr3	115109927	115110224	SINE|Alu|AluSx	+	chr3	114338652	115100295	STRG.6898.2	-	114338652,114350273,114380216,114389004,114500351,114693527,114801100,114900303,114974365,115071218,115100174	114339426,114351878,114380404,114389105,114500391,114693575,114801174,114900342,114974416,115071414,115100295	0.914286
gastrocnemius_medialis_female_adult_51_years	chr11	14337098	14337124	14337110	-	High_confidence	4	4	15	1.019014	3.521641	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.733333
gastrocnemius_medialis_female_adult_51_years	chr2	36584153	36584154	36584153	-	High_confidence	38	39	40	2.717370	3.620336	chr2	36584029	36584427	LTR|ERVL|LTR33	+	chr2	36555682	36584058	FEZ2|ENST00000464964.1	-	36555682,36558437,36578596,36581289,36583352,36584029	36555748,36558513,36578865,36581431,36583469,36584058	0.950000
gastrocnemius_medialis_female_adult_51_years	chr17	40648567	40648584	40648583	-	High_confidence	4	4	11	0.747277	3.121928	chr17	40648546	40648925	LINE|L2|L2b	+	chr17	40625002	40648654	SMARCE1|ENST00000643318.1	-	40625002,40630713,40631591,40632194,40635930,40636394,40637491,40645795,40647772	40628993,40630924,40631693,40632367,40636102,40636526,40637572,40645847,40648654	0.818182
gastrocnemius_medialis_female_adult_51_years	chr20	43779323	43779384	43779383	-	High_confidence	19	20	79	5.366806	5.352146	chr20	43779289	43779551	LTR|ERVL|ERVL-E-int	+	chr20	43772649	43779427	STRG.30791.1	-	43772649,43777542,43779255	43773647,43777737,43779427	0.974684
gastrocnemius_medialis_female_adult_51_years	chr1	31376356	31376357	31376356	-	High_confidence	94	94	94	6.385820	4.923490	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.893617
gastrocnemius_medialis_female_adult_51_years	chr3	135965822	135965823	135965822	+	High_confidence	5	5	7	0.475540	2.584963	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.857143
gastrocnemius_medialis_female_adult_51_years	chr8	119875413	119875430	119875415	+	RAMPAGE_only	5	8	17	1.154882	3.625000	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.823529
gastrocnemius_medialis_female_adult_51_years	chr12	53427241	53427250	53427241	+	RAMPAGE_only	29	31	63	4.279858	4.287455	chr12	53427040	53427257	LINE|L2|L2a	-	chr12	53423934	53431473	AMHR2|ENST00000379791.7	+	53423934,53424287,53424708,53425164,53425454,53425688,53428895,53429452,53431176	53423983,53424470,53424900,53425242,53425573,53425919,53429010,53429625,53431473	0.968254
gastrocnemius_medialis_female_adult_51_years	chr5	32403108	32403224	32403148	-	RAMPAGE_only	8	8	45	3.057042	4.582901	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.955556
gastrocnemius_medialis_female_adult_51_years	chr17	59620043	59620081	59620043	+	High_confidence	9	11	24	1.630422	4.001823	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59694114	STRG.27692.1	+	59619942,59644275,59647397,59648239,59651202,59655853,59660390,59661442,59663841,59664786,59666102,59666479,59666796,59668776,59673646,59674700,59676953,59679396,59680911,59681294,59681646,59682270,59682628,59682906,59683094,59683386,59683624,59683874,59685055,59685586,59687000,59690635,59693727	59620173,59644483,59647666,59648401,59651316,59656027,59660588,59661643,59663994,59664909,59666240,59666644,59666977,59668940,59673772,59674843,59677188,59679519,59681057,59681478,59681839,59682428,59682793,59683014,59683262,59683536,59683756,59683985,59685226,59685808,59687021,59690711,59694114	0.958333
gastrocnemius_medialis_female_adult_51_years	chr6	43013392	43013393	43013392	-	High_confidence	6	6	7	0.475540	2.584963	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.857143
gastrocnemius_medialis_female_adult_51_years	chr5	137316021	137316025	137316021	-	High_confidence	11	12	22	1.494554	3.788755	chr5	137316016	137316339	LTR|ERVL-MaLR|MLT1A0	-	chr5	136975299	137316005	STRG.10628.2	-	136975299,136979331,136985139,136988421,136992483,137067714,137112434,137140579,137267009,137315513	136978844,136979469,136985202,136988643,136992600,137067829,137112561,137140694,137267055,137316005	0.909091
gastrocnemius_medialis_female_adult_51_years	chr7	134535463	134535498	134535465	+	RAMPAGE_only	6	8	19	1.290751	3.308271	chr7	134535438	134535480	DNA|hAT-Charlie|MER5B	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.789474
gastrocnemius_medialis_female_adult_51_years	chr5	194442	194457	194456	-	High_confidence	30	37	82	5.570609	3.977356	chr5	194425	194536	DNA|hAT-Charlie|MER58B	-	chr5	192664	194462	STRG.9378.1	-	192664,194361	192988,194462	0.951220
gastrocnemius_medialis_female_adult_51_years	chr15	74174548	74174572	74174548	+	High_confidence	9	9	32	2.173896	4.438067	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	0.968750
gastrocnemius_medialis_female_adult_51_years	chr16	86727330	86727347	86727346	+	High_confidence	45	45	88	5.978215	5.817053	chr16	86727319	86727414	SINE|Alu|AluSx3	+	chr16	86727346	86738593	LINC02188|ENST00000649094.1	+	86727346,86727867,86734825,86737409	86727536,86727967,86734909,86738593	0.579545
gastrocnemius_medialis_female_adult_51_years	chr8	123501411	123501531	123501411	-	RAMPAGE_only	31	32	141	9.578730	5.973751	chr8	123501398	123501482	DNA|hAT-Charlie|MER106B	+	chr8	123497886	123532143	FBXO32|NM_148177.2	-	123497886,123504603,123506391,123513197,123514239,123531897	123503462,123504747,123506574,123513382,123514333,123532143	1.000000
gastrocnemius_medialis_female_adult_51_years	chr5	140700424	140700452	140700445	+	High_confidence	338	473	1173	79.686883	4.895822	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.989770
gastrocnemius_medialis_female_adult_51_years	chr12	10705191	10705226	10705209	-	High_confidence	10	18	40	2.717370	4.406198	chr12	10705091	10705385	SINE|Alu|AluSc	-	chr12	10699477	10704438	YBX3|ENST00000536823.5	-	10699477,10701253,10701959,10704050	10699654,10701353,10702134,10704438	0.950000
gastrocnemius_medialis_female_adult_51_years	chr20	45833251	45833252	45833251	-	High_confidence	81	81	81	5.502675	4.349059	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
gastrocnemius_medialis_female_adult_51_years	chr20	50131130	50131140	50131139	-	High_confidence	10	12	22	1.494554	3.880180	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.954545
gastrocnemius_medialis_female_adult_51_years	chr12	46470198	46470201	46470198	+	High_confidence	7	7	13	0.883145	3.238901	chr12	46469980	46470323	LTR|ERVL-MaLR|MLT1B	+	chr12	46470150	46652644	STRG.21291.6	+	46470150,46652389	46470262,46652644	0.615385
gastrocnemius_medialis_female_adult_51_years	chr5	95844201	95844202	95844201	+	High_confidence	8	8	9	0.611408	2.500000	chr5	95844156	95844245	LTR|ERVL-MaLR|MLT1K	+	chr5	95843917	95852901	STRG.10223.5	+	95843917,95848840,95852791	95844567,95852714,95852901	0.888889
gastrocnemius_medialis_female_adult_51_years	chr3	152396038	152396118	152396038	+	RAMPAGE_only	37	38	175	11.888495	4.585868	chr3	152395923	152396404	DNA|hAT-Charlie|MER1A	+	chr3	152300197	152459302	STRG.7306.4	+	152300197,152414940,152432716,152445281,152447619,152455541,152456266,152459270	152300367,152415111,152432920,152445539,152447773,152455577,152456361,152459302	0.977143
gastrocnemius_medialis_female_adult_51_years	chr13	37484787	37484788	37484787	-	High_confidence	6	7	9	0.611408	2.947703	chr13	37484620	37484966	LTR|ERVL-MaLR|THE1B	-	chr13	37481463	37484784	LINC01048|NR_125762.1	-	37481463,37484284,37484469,37484704	37481727,37484393,37484545,37484784	1.000000
gastrocnemius_medialis_female_adult_51_years	chr17	63976869	63976897	63976869	-	RAMPAGE_only	4	4	22	1.494554	4.061482	chr17	63976743	63977022	LINE|L2|L2-3_Crp	+	chr17	63938553	63972918	SCN4A|ENST00000435607.3	-	63938553,63942825,63943745,63944672,63945006,63945359,63947044,63947889,63948610,63949392,63951423,63957161,63959264,63961192,63963671,63964467,63966101,63966480,63968022,63971161,63971721,63972135,63972351,63972568	63941993,63943096,63943850,63944810,63945060,63945638,63947167,63948063,63948765,63949528,63951900,63957518,63959438,63961431,63963825,63964677,63966243,63966544,63968355,63971253,63971850,63972225,63972470,63972918	0.681818
gastrocnemius_medialis_female_adult_51_years	chr11	73468826	73468842	73468826	-	High_confidence	5	5	19	1.290751	3.530493	chr11	73468774	73468895	SINE|MIR|MIR3	+	chr11	73430162	73468492	FAM168A|ENST00000432223.2	-	73430162,73468404	73430770,73468492	0.684211
gastrocnemius_medialis_female_adult_51_years	chr6	31587195	31587244	31587220	+	High_confidence	5	5	21	1.426619	3.558519	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	1.000000
gastrocnemius_medialis_female_adult_51_years	chr15	75626291	75626305	75626291	-	High_confidence	3	5	8	0.543474	2.500000	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
gastrocnemius_medialis_female_adult_51_years	chr9	128921399	128921413	128921399	+	High_confidence	16	18	27	1.834225	4.310443	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	1.000000
gastrocnemius_medialis_female_adult_51_years	chr15	25346017	25346031	25346023	-	High_confidence	47	48	149	10.122204	5.815338	chr15	25345979	25347018	LINE|L1|L1ME2	+	chr15	25333727	25346031	UBE3A|ENST00000636667.1	-	25333727,25340084,25345979	25339257,25340228,25346031	0.986577
gastrocnemius_medialis_female_adult_51_years	chr1	212792444	212792473	212792444	-	High_confidence	4	4	16	1.086948	3.125000	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.750000
gastrocnemius_medialis_female_adult_51_years	chr2	219419848	219419859	219419848	+	High_confidence	5	5	10	0.679343	2.641604	chr2	219419757	219419880	LINE|L2|L2b	-	chr2	219420044	219423820	DES|ENST00000477226.5	+	219420044,219420250,219420494,219420827,219421339,219423776	219420155,219420346,219420656,219420953,219421560,219423820	0.700000
gastrocnemius_medialis_female_adult_51_years	chr14	102180496	102180508	102180502	+	RAMPAGE_only	5	5	16	1.086948	3.250000	chr14	102180483	102180536	SINE|Alu|AluSx	-	chr14	102178941	102208902	WDR20|ENST00000558448.5	+	102178941,102194937,102197754,102208602	102178976,102195120,102197847,102208902	0.937500
gastrocnemius_medialis_female_adult_51_years	chr8	85378112	85378113	85378112	-	High_confidence	11	11	11	0.747277	3.277613	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	1.000000
gastrocnemius_medialis_female_adult_51_years	chr16	87381440	87381460	87381459	-	RAMPAGE_only	4	6	11	0.747277	2.721928	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87326986	87383748	STRG.26442.1	-	87326986,87333885,87335303,87336154,87342876,87343597,87347173,87358410,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87358497,87360366,87383748	0.818182
gastrocnemius_medialis_female_adult_51_years	chr3	141429538	141429539	141429538	+	RAMPAGE_only	13	13	16	1.086948	3.327820	chr3	141429492	141430039	LINE|L2|L2a	-	chr3	141431722	141442722	ZBTB38|ENST00000509813.1	+	141431722,141442388	141432243,141442722	0.562500
gastrocnemius_medialis_female_adult_51_years	chr4	119145721	119145763	119145762	+	RAMPAGE_only	12	20	41	2.785305	4.684184	chr4	119145674	119147458	LINE|L1|L1MD1	-	chr4	119135783	119187789	MYOZ2|ENST00000307128.5	+	119135783,119136511,119150871,119158021,119164210,119185965	119135982,119136601,119151041,119158151,119164394,119187789	0.975610
gastrocnemius_medialis_female_adult_51_years	chr2	201122659	201122663	201122662	+	High_confidence	15	16	23	1.562488	4.011365	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201122576	201163973	STRG.5196.6	+	201122576,201129728,201133028,201135971,201140356,201145377,201149002,201149753,201160431,201163834	201122747,201130146,201133134,201136107,201140439,201145432,201149052,201149835,201160942,201163973	0.913043
gastrocnemius_medialis_female_adult_51_years	chr17	59619894	59619923	59619894	+	High_confidence	814	855	1937	131.588655	5.248378	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.969541
gastrocnemius_medialis_female_adult_51_years	chr15	56177127	56177128	56177127	-	RAMPAGE_only	11	12	13	0.883145	3.392747	chr15	56176704	56177495	LINE|L2|L2a	+	chr15	56087282	56243266	RFX7|ENST00000559447.6	-	56087282,56098080,56101358,56102168,56103551,56142777,56144400,56179269,56243124	56096620,56098376,56101566,56102251,56103670,56142900,56144483,56179303,56243266	0.538462
gastrocnemius_medialis_female_adult_51_years	chr14	64747374	64747394	64747393	-	RAMPAGE_only	4	5	9	0.611408	2.641604	chr14	64747354	64747416	SINE|MIR|MIR1_Amn	+	chr14	64746282	64823148	SPTB|NM_001024858.2	-	64746282,64749653,64749980,64753536,64766725,64767302,64767662,64769033,64769589,64770884,64772579,64773219,64774396,64775124,64779156,64779724,64782289,64784246,64785536,64785748,64786403,64791718,64792996,64794466,64795336,64796556,64797728,64799746,64800755,64801284,64801753,64802225,64803606,64804938,64822946	64749473,64749696,64750154,64753793,64766801,64767352,64767859,64769118,64769728,64771129,64772954,64773424,64774527,64775403,64779246,64779931,64782553,64784393,64785627,64785951,64787160,64791856,64793867,64794617,64795639,64796715,64797846,64799934,64800868,64801400,64801834,64802317,64803780,64805090,64823148	1.000000
gastrocnemius_medialis_female_adult_51_years	chr6	26957017	26957044	26957017	+	High_confidence	9	11	25	1.698356	4.323856	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26956992	27023924	LINC00240|ENST00000606878.1	+	26956992,26968457,27023253	26957183,26968522,27023924	0.680000
gastrocnemius_medialis_female_adult_51_years	chr10	73645859	73645923	73645886	-	RAMPAGE_only	5	6	33	2.241830	3.952820	chr10	73645821	73646123	SINE|Alu|AluY	-	chr10	73644880	73651029	SYNPO2L|ENST00000372873.8	-	73644880,73650907	73648879,73651029	0.969697
gastrocnemius_medialis_female_adult_51_years	chr21	34737177	34737205	34737204	-	High_confidence	7	7	21	1.426619	3.653757	chr21	34736861	34737522	LINE|L1|L1ME4b	-	chr21	34723806	34737182	LINC00160|NR_024351.2	-	34723806,34724045,34732908,34733960,34734685,34737109	34723953,34724196,34733079,34734041,34734756,34737182	0.523810
gastrocnemius_medialis_female_adult_51_years	chr11	74070871	74070874	74070873	-	High_confidence	8	11	14	0.951080	3.026987	chr11	74070756	74071175	LINE|L2|L2c	+	chr11	74049518	74070869	C2CD3|ENST00000542484.1	-	74049518,74054606,74057405,74070505	74049542,74054671,74057544,74070869	0.785714
gastrocnemius_medialis_female_adult_51_years	chr3	179785703	179785731	179785703	+	RAMPAGE_only	3	3	11	0.747277	3.095795	chr3	179785740	179785926	SINE|MIR|MIRc	+	chr3	179653144	179789401	USP13|NM_003940.2	+	179653144,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653393,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179789401	1.000000
gastrocnemius_medialis_female_adult_51_years	chr7	7689354	7689363	7689358	+	High_confidence	36	36	100	6.793426	5.337958	chr7	7689061	7689544	LTR|ERVL-MaLR|MLT1L	+	chr7	7689201	7721987	STRG.13163.7	+	7689201,7720912	7689460,7721987	0.890000
gastrocnemius_medialis_female_adult_51_years	chr4	118976136	118976193	118976185	+	RAMPAGE_only	201	207	739	50.203416	6.497619	chr4	118976073	118977610	LTR|ERV1|LTR12C	-	chr4	119023470	119061247	SYNPO2|ENST00000504178.1	+	119023470,119026626,119029844,119057400	119023581,119027438,119031853,119061247	0.966171
gastrocnemius_medialis_female_adult_51_years	chr3	14523935	14523943	14523942	-	RAMPAGE_only	6	6	16	1.086948	3.750000	chr3	14523802	14523900	SINE|MIR|MIR1_Amn	-	chr3	14520691	14525983	GRIP2|ENST00000422481.5	-	14520691,14525436,14525850	14524538,14525572,14525983	0.500000
gastrocnemius_medialis_female_adult_51_years	chr12	105353485	105353530	105353510	+	High_confidence	47	50	287	19.497132	6.206274	chr12	105353069	105353608	LTR|ERVL-MaLR|MLT1K	-	chr12	105353508	105371203	C12orf75|ENST00000548336.1	+	105353508,105365806,105366616,105367471,105370633	105353586,105365842,105366696,105367509,105371203	0.979094
gastrocnemius_medialis_female_adult_51_years	chr1	153967486	153967504	153967497	+	High_confidence	11	12	33	2.241830	3.823391	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.606061
gastrocnemius_medialis_female_adult_51_years	chr22	35611961	35611962	35611961	-	RAMPAGE_only	11	11	13	0.883145	2.777363	chr22	35611957	35612110	SINE|MIR|MIRb	-	chr22	35606763	35615713	MB|ENST00000401702.5	-	35606763,35610883,35615573	35607443,35611106,35615713	1.000000
gastrocnemius_medialis_female_adult_51_years	chr19	18013401	18013425	18013424	+	RAMPAGE_only	3	3	9	0.611408	2.750000	chr19	18013258	18013441	LINE|L2|L2c	-	chr19	18008169	18014100	ARRDC2|ENST00000593460.1	+	18008169,18012912	18010729,18014100	0.666667
gastrocnemius_medialis_female_adult_51_years	chr12	10702260	10702261	10702260	-	High_confidence	15	15	15	1.019014	2.739572	chr12	10702238	10702535	SINE|Alu|AluSz	+	chr12	10699316	10702475	YBX3|ENST00000540975.5	-	10699316,10701253,10701959,10702411	10699654,10701353,10702134,10702475	1.000000
gastrocnemius_medialis_female_adult_51_years	chr2	182928782	182928818	182928788	-	RAMPAGE_only	6	9	21	1.426619	3.997670	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.571429
gastrocnemius_medialis_female_adult_51_years	chr7	36127210	36127244	36127243	-	RAMPAGE_only	20	23	40	2.717370	4.156195	chr7	36127036	36127200	LINE|CR1|L3	-	chr7	36067833	36105294	STRG.13459.1	-	36067833,36104946	36067876,36105294	0.575000
gastrocnemius_medialis_female_adult_51_years	chr10	113662680	113662695	113662680	-	RAMPAGE_only	23	23	76	5.163003	4.705556	chr10	113662586	113662659	LINE|L1|L1MA4A	-	chr10	113588715	113664046	NRAP|ENST00000369360.7	-	113588715,113589665,113590577,113592193,113595622,113597085,113597968,113604608,113605761,113606177,113608413,113610458,113612233,113614182,113614838,113615711,113617454,113620603,113621868,113623528,113624825,113626046,113628916,113629587,113631508,113631852,113633083,113634111,113640226,113641364,113645824,113646922,113650036,113650437,113651802,113652934,113654020,113657469,113662678,113663351,113663810	113589079,113589797,113590889,113592301,113595727,113597184,113598073,113604920,113605869,113606282,113608512,113610563,113612431,113614296,113614946,113615816,113617553,113620708,113622180,113623636,113624930,113626145,113629021,113629785,113631630,113631964,113633188,113634210,113640331,113641472,113645941,113647027,113650141,113650545,113651907,113653039,113654125,113657574,113662766,113663446,113664046	0.986842
gastrocnemius_medialis_female_adult_51_years	chr2	29114109	29114174	29114109	+	High_confidence	22	23	147	9.986336	5.467236	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.986395
gastrocnemius_medialis_female_adult_51_years	chr15	72061604	72061605	72061604	-	RAMPAGE_only	6	6	6	0.407606	2.584963	chr15	72060423	72062737	LINE|L1|L1M1	+	chr15	71889471	72046636	MYO9A|ENST00000563542.5	-	71889471,71893678,71897460,71899686,71901190,71902940,71903928,71904925,71916369,71933669,71935340,71938851,71951776,71959900,71967983,71978170,71991102,71994468,71999850,72007825,72010349,72020917,72027730,72032493,72045723	71893177,71893778,71899032,71900006,71901340,71903063,71904039,71905006,71916492,71933709,71935484,71938927,71951896,71960096,71968125,71978292,71991237,71994585,71999940,72007952,72010447,72021017,72027793,72032588,72046636	1.000000
gastrocnemius_medialis_female_adult_51_years	chr19	48868595	48868631	48868610	-	High_confidence	103	124	538	36.548630	6.900116	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48865521	48868617	STRG.29959.6	-	48865521,48867536,48868082	48865610,48867626,48868617	0.988848
gastrocnemius_medialis_female_adult_51_years	chr9	39809997	39810034	39810033	-	High_confidence	26	27	81	5.502675	4.732862	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803703	39810013	STRG.16500.2	-	39803703,39809485,39809730	39803859,39809615,39810013	0.901235
gastrocnemius_medialis_female_adult_51_years	chr20	3795822	3795835	3795834	+	High_confidence	6	6	12	0.815211	2.913977	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.916667
gastrocnemius_medialis_female_adult_51_years	chr7	7555293	7555327	7555319	-	RAMPAGE_only	85	88	434	29.483467	5.425038	chr7	7555240	7555694	LTR|ERVL|LTR16A	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.981567
gastrocnemius_medialis_female_adult_51_years	chr5	154027552	154027570	154027569	-	RAMPAGE_only	6	7	19	1.290751	3.616349	chr5	154027515	154027800	SINE|Alu|AluSz	-	chr5	153991702	154038866	FAM114A2|ENST00000522858.5	-	153991702,153994918,153997802,154002250,154002846,154011240,154026398,154027175,154028148,154029488,154033790,154034277,154034743,154038292	153993110,153994972,153997875,154002390,154002969,154011320,154026522,154027334,154028283,154029580,154033883,154034377,154034967,154038866	1.000000
gastrocnemius_medialis_female_adult_51_years	chr1	25820192	25820219	25820192	+	High_confidence	3	3	11	0.747277	2.913977	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.818182
gastrocnemius_medialis_female_adult_51_years	chr2	177888736	177888750	177888742	-	High_confidence	4	4	9	0.611408	2.750000	chr2	177888663	177888891	LTR|ERVL|LTR40c	+	chr2	177623248	177888739	PDE11A|NM_001077196.1	-	177623248,177663865,177669492,177675454,177680825,177697331,177701120,177711768,177727657,177728025,177769322,177816828,177817857,177820219,177840250,177875858,177888618	177629562,177663949,177669567,177675518,177680903,177697432,177701211,177711878,177727765,177728172,177769373,177816921,177817925,177820295,177840383,177875923,177888739	0.777778
gastrocnemius_medialis_female_adult_51_years	chr2	231072212	231072233	231072232	+	RAMPAGE_only	2	2	8	0.543474	3.000000	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	1.000000
gastrocnemius_medialis_female_adult_51_years	chr10	102779851	102779855	102779854	+	RAMPAGE_only	5	5	9	0.611408	2.750000	chr10	102779736	102779930	LINE|L2|L2c	-	chr10	102776248	102816267	WBP1L|ENST00000369889.5	+	102776248,102797992,102809892,102812594	102776417,102798095,102810054,102816267	0.888889
gastrocnemius_medialis_female_adult_51_years	chr10	45000495	45000515	45000513	+	High_confidence	2	5	8	0.543474	2.521641	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.875000
gastrocnemius_medialis_female_adult_51_years	chrX	7147287	7147288	7147287	+	High_confidence	9	9	12	0.815211	3.418296	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	1.000000
gastrocnemius_medialis_female_adult_51_years	chr17	29643374	29643378	29643377	-	RAMPAGE_only	150	181	300	20.380277	5.673980	chr17	29643278	29643403	LTR|ERVL-MaLR|MLT1L	+	chr17	29625937	29761390	STRG.27121.5	-	29625937,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677741,29684684,29695523,29703062,29761390	0.773333
gastrocnemius_medialis_female_adult_51_years	chr2	55618850	55618873	55618850	-	High_confidence	9	9	19	1.290751	3.681881	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	1.000000
gastrocnemius_medialis_female_adult_51_years	chr5	16461787	16461794	16461793	-	RAMPAGE_only	6	7	15	1.019014	3.056565	chr5	16460895	16461922	LINE|L2|L2a	-	chr5	16451518	16465785	ZNF622|NM_033414.2	-	16451518,16453012,16458516,16463107,16463481,16465040	16451784,16453156,16458629,16463270,16463742,16465785	1.000000
gastrocnemius_medialis_female_adult_51_years	chr1	85379858	85379859	85379858	-	RAMPAGE_only	6	7	9	0.611408	2.500000	chr1	85379701	85380025	LINE|L2|L2	+	chr1	85321451	85404528	DDAH1|ENST00000633113.1	-	85321451,85324739,85350414,85351505,85358747,85404380	85321568,85324883,85350534,85351579,85358847,85404528	0.888889
gastrocnemius_medialis_female_adult_51_years	chr15	50766091	50766111	50766110	-	High_confidence	3	3	6	0.407606	2.584963	chr15	50766003	50766223	LINE|L2|L2a	+	chr15	50702265	50765808	SPPL2A|ENST00000261854.9	-	50702265,50719939,50722123,50725220,50726320,50730964,50732602,50736100,50736643,50739679,50747494,50748112,50748687,50749635,50765467	50707874,50720100,50722201,50725323,50726377,50731039,50732684,50736202,50736740,50739828,50747628,50748202,50748870,50749746,50765808	0.833333
gastrocnemius_medialis_female_adult_51_years	chr11	107719823	107719824	107719823	-	High_confidence	143	144	146	9.918401	5.101598	chr11	107719646	107719884	LTR|Gypsy?|LTR88c	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.979452
gastrocnemius_medialis_female_adult_51_years	chr19	12800915	12800962	12800944	-	High_confidence	14	15	42	2.853239	3.804786	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.976190
gastrocnemius_medialis_female_adult_51_years	chr10	88440637	88440662	88440661	-	RAMPAGE_only	5	5	11	0.747277	3.459432	chr10	88440409	88440716	LTR|ERVL-MaLR|MLT1L	-	chr10	88284958	88583213	RNLS|ENST00000331772.8	-	88284958,88314465,88362551,88572902,88581566,88582201,88583072	88285506,88314641,88362725,88573061,88581709,88582307,88583213	0.727273
gastrocnemius_medialis_female_adult_51_years	chr8	56559496	56559497	56559496	-	High_confidence	68	68	77	5.230938	5.395066	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.519481
gastrocnemius_medialis_female_adult_51_years	chr12	15001810	15001839	15001838	+	High_confidence	4	6	18	1.222817	3.572469	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.888889
gastrocnemius_medialis_female_adult_51_years	chr4	3112860	3112864	3112863	+	High_confidence	28	31	58	3.940187	4.068936	chr4	3112259	3112985	LINE|L1|L1ME3A	-	chr4	3112863	3115445	HTT|ENST00000648150.1	+	3112863,3115303	3113052,3115445	0.741379
gastrocnemius_medialis_female_adult_51_years	chr15	34988764	34988765	34988764	-	High_confidence	7	7	9	0.611408	3.000000	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988564	STRG.24332.2	-	34978340,34987556,34988502	34983490,34987673,34988564	0.888889
gastrocnemius_medialis_female_adult_51_years	chr12	102351141	102351145	102351141	-	High_confidence	23	23	36	2.445633	4.138830	chr12	102350797	102351351	LTR|ERVL|MLT2A2	-	chr12	102326689	102351521	STRG.22012.1	-	102326689,102338954,102341907,102343530,102350886	102327271,102339044,102342008,102343616,102351521	0.805556
gastrocnemius_medialis_female_adult_51_years	chr4	119145808	119145830	119145829	+	RAMPAGE_only	16	22	66	4.483661	4.820563	chr4	119145674	119147458	LINE|L1|L1MD1	-	chr4	119135783	119187789	MYOZ2|ENST00000307128.5	+	119135783,119136511,119150871,119158021,119164210,119185965	119135982,119136601,119151041,119158151,119164394,119187789	0.969697
gastrocnemius_medialis_female_adult_51_years	chr14	73725529	73725530	73725529	-	RAMPAGE_only	5	5	8	0.543474	2.750000	chr14	73725505	73725621	SINE|MIR|MIRb	+	chr14	73715123	73727133	ELMSAN1|ENST00000476562.5	-	73715123,73721296,73722697,73725271,73726032,73726603,73726829	73719501,73721509,73722847,73725360,73726108,73726707,73727133	0.875000
gastrocnemius_medialis_female_adult_51_years	chr18	46087118	46087144	46087118	-	High_confidence	4	4	14	0.951080	3.807355	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.714286
gastrocnemius_medialis_female_adult_51_years	chr6	46105685	46105694	46105693	-	RAMPAGE_only	57	77	113	7.676571	4.687018	chr6	46104973	46106121	LTR|ERV1|LTR49-int	+	chr6	46097092	46129591	AL035701.1|ENST00000444038.2	-	46097092,46102539,46129503	46097346,46102659,46129591	0.823009
gastrocnemius_medialis_female_adult_51_years	chr10	103181328	103181329	103181328	-	High_confidence	7	7	7	0.475540	2.807355	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103097307	103181332	STRG.18733.3	-	103097307,103098930,103099925,103101044,103101234,103105357,103105705,103106588,103111744,103139405,103174857,103181230	103097374,103098984,103100019,103101102,103101326,103105381,103105801,103106706,103111805,103139479,103174982,103181332	0.714286
gastrocnemius_medialis_female_adult_51_years	chr4	141332616	141332617	141332616	-	High_confidence	32	32	33	2.241830	3.991729	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.969697
gastrocnemius_medialis_female_adult_51_years	chr1	242001562	242001603	242001562	-	High_confidence	5	5	18	1.222817	3.381580	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	242001573	STRG.3005.2	-	241995489,241998513,241998775,242001308	241996385,241998620,241998831,242001573	0.666667
gastrocnemius_medialis_female_adult_51_years	chr1	153637550	153637551	153637550	+	High_confidence	14	14	16	1.086948	3.625000	chr1	153637372	153637665	SINE|Alu|AluSg	+	chr1	153638083	153645470	CHTOP|ENST00000368687.1	+	153638083,153642245,153643226,153645063	153638448,153642429,153643364,153645470	0.937500
gastrocnemius_medialis_female_adult_51_years	chr15	80059918	80059933	80059918	+	High_confidence	73	88	174	11.820561	4.833578	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.982759
gastrocnemius_medialis_female_adult_51_years	chr12	45292824	45292857	45292825	+	High_confidence	7	11	37	2.513567	4.072431	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.945946
gastrocnemius_medialis_female_adult_51_years	chr21	28090097	28090132	28090097	+	High_confidence	9	9	21	1.426619	3.689704	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28089888	28102790	LINC01697|ENST00000423808.2	+	28089888,28102549	28090521,28102790	1.000000
gastrocnemius_medialis_female_adult_51_years	chr1	19344357	19344405	19344357	-	RAMPAGE_only	4	4	21	1.426619	3.787144	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.904762
gastrocnemius_medialis_female_adult_51_years	chr6	2990740	2990749	2990740	-	RAMPAGE_only	6	6	20	1.358685	3.471354	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.950000
gastrocnemius_medialis_female_adult_51_years	chr2	43482900	43482901	43482900	-	High_confidence	12	12	18	1.222817	3.337175	chr2	43482863	43483049	SINE|MIR|MIRc	-	chr2	43230857	43482923	STRG.3601.5	-	43230857,43232712,43279764,43286907,43291695,43292103,43292833,43320445,43344121,43397970,43428099,43430212,43482726	43231343,43232882,43279896,43287061,43291768,43292222,43293213,43320540,43344237,43398139,43428231,43430302,43482923	0.833333
gastrocnemius_medialis_female_adult_51_years	chr12	46243230	46243236	46243234	-	RAMPAGE_only	2	3	7	0.475540	2.584963	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.714286
gastrocnemius_medialis_female_adult_51_years	chr1	231422708	231422749	231422714	-	RAMPAGE_only	13	13	53	3.600516	4.708750	chr1	231422714	231422871	SINE|MIR|MIRb	-	chr1	231363750	231425044	EGLN1|ENST00000366641.3	-	231363750,231367568,231370561,231373979,231420997	231366475,231367636,231370698,231374099,231425044	1.000000
gastrocnemius_medialis_female_adult_51_years	chr2	27978251	27978252	27978251	+	High_confidence	9	9	13	0.883145	3.026987	chr2	27978041	27978454	LTR|ERVL-MaLR|MSTB	+	chr2	27978267	28338901	STRG.3383.7	+	27978267,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28338449	27978374,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28338901	1.000000
gastrocnemius_medialis_female_adult_51_years	chr19	3062922	3062983	3062922	-	High_confidence	53	59	266	18.070512	6.130044	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.977444
gastrocnemius_medialis_female_adult_51_years	chr21	28048446	28048447	28048446	+	High_confidence	155	161	179	12.160232	4.258529	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.977654
gastrocnemius_medialis_female_adult_51_years	chr20	20088969	20089045	20089044	-	High_confidence	16	17	74	5.027135	4.857574	chr20	20088660	20089017	LINE|RTE-X|L4_B_Mam	-	chr20	20075347	20089233	STRG.30550.5	-	20075347,20088366,20088851	20080997,20088435,20089233	0.743243
gastrocnemius_medialis_female_adult_51_years	chr11	100715407	100715410	100715407	+	RAMPAGE_only	13	13	20	1.358685	3.784184	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100738442	100913524	ARHGAP42|ENST00000534060.5	+	100738442,100770342,100795104,100816714,100859553,100913451	100738498,100770438,100795166,100816856,100859625,100913524	0.500000
gastrocnemius_medialis_female_adult_51_years	chr17	16849976	16850020	16850019	-	High_confidence	6	6	28	1.902159	4.235926	chr17	16849983	16850107	LINE|L2|L2c	+	chr17	16847741	16850017	STRG.26921.1	-	16847741,16848096,16849200,16849669,16849920	16847938,16848245,16849421,16849784,16850017	0.928571
gastrocnemius_medialis_female_adult_51_years	chr3	37058819	37058884	37058883	-	RAMPAGE_only	4	4	31	2.105962	3.896798	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.935484
gastrocnemius_medialis_female_adult_51_years	chr6	33750454	33750487	33750486	-	RAMPAGE_only	53	57	116	7.880374	5.658002	chr6	33750365	33750686	LINE|L2|L2b	+	chr6	33721665	33746985	IP6K3|NM_001142883.1	-	33721665,33725440,33726730,33728086,33735277,33739132,33746757	33723187,33725616,33726906,33728300,33735655,33739261,33746985	0.956897
gastrocnemius_medialis_female_adult_51_years	chr16	87381508	87381509	87381508	-	RAMPAGE_only	7	7	10	0.679343	2.725481	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87326986	87383748	STRG.26442.1	-	87326986,87333885,87335303,87336154,87342876,87343597,87347173,87358410,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87358497,87360366,87383748	0.800000
gastrocnemius_medialis_female_adult_51_years	chr15	50766169	50766315	50766171	-	High_confidence	22	43	139	9.442862	5.732545	chr15	50766003	50766223	LINE|L2|L2a	+	chr15	50702265	50765808	SPPL2A|ENST00000261854.9	-	50702265,50719939,50722123,50725220,50726320,50730964,50732602,50736100,50736643,50739679,50747494,50748112,50748687,50749635,50765467	50707874,50720100,50722201,50725323,50726377,50731039,50732684,50736202,50736740,50739828,50747628,50748202,50748870,50749746,50765808	0.733813
gastrocnemius_medialis_female_adult_51_years	chr2	178679598	178679659	178679658	-	RAMPAGE_only	25	30	262	17.798775	6.393324	chr2	178679617	178679655	LINE|CR1|L3	-	chr2	178636751	178702520	TTN|ENST00000414766.5	-	178636751,178639698,178640047,178640540,178641240,178642236,178673632,178674313,178678124,178678413,178678746,178681660,178682696,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453	178636799,178639788,178640110,178640630,178641315,178642317,178673710,178674409,178678208,178678497,178678830,178681738,178682903,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702520	0.816794
gastrocnemius_medialis_female_adult_51_years	chr7	103353924	103353940	103353930	+	High_confidence	5	6	15	1.019014	3.521641	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.600000
gastrocnemius_medialis_female_adult_51_years	chr8	144103602	144103640	144103602	-	High_confidence	6	6	18	1.222817	3.734522	chr8	144103289	144103558	SINE|MIR|MIR	-	chr8	144098636	144104190	SHARPIN|ENST00000398712.6	-	144098636,144098865,144099080,144099276,144099509,144099702,144099928,144103050,144103552	144098788,144098994,144099205,144099430,144099618,144099844,144100069,144103225,144104190	0.888889
gastrocnemius_medialis_female_adult_51_years	chr8	41661999	41662008	41661999	-	RAMPAGE_only	3	3	13	0.883145	3.418296	chr8	41661976	41662267	SINE|Alu|AluSx1	+	chr8	41653224	41665207	STRG.15230.3	-	41653224,41661429,41661800,41663658,41664804	41655753,41661564,41661941,41663742,41665207	0.923077
gastrocnemius_medialis_female_adult_51_years	chr6	31006045	31006056	31006045	+	High_confidence	7	7	15	1.019014	3.139572	chr6	31005825	31006127	SINE|Alu|AluSx1	+	chr6	31005951	31035402	MUC22|NM_001198815.1	+	31005951,31010669,31025501,31032195,31034671	31006133,31010776,31030100,31032581,31035402	1.000000
gastrocnemius_medialis_female_adult_51_years	chrX	54747130	54747221	54747130	+	High_confidence	17	17	71	4.823332	5.603111	chrX	54744135	54747484	LINE|L1|L1M1	-	chrX	54747141	54772507	STRG.32527.6	+	54747141,54748865,54749866,54763815,54771403	54747342,54748897,54749989,54763844,54772507	0.605634
gastrocnemius_medialis_female_adult_51_years	chr2	26126443	26126512	26126455	+	RAMPAGE_only	49	54	153	10.393941	5.660569	chr2	26126295	26126597	SINE|Alu|AluSz6	+	chr2	26098529	26135068	RAB10|ENST00000473035.1	+	26098529,26098661,26109767,26127143,26127849,26134937	26098577,26098722,26109906,26127233,26127951,26135068	0.790850
gastrocnemius_medialis_female_adult_51_years	chr12	9965320	9965321	9965320	+	RAMPAGE_only	4	4	7	0.475540	2.521641	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	1.000000
gastrocnemius_medialis_female_adult_51_years	chr1	86706276	86706293	86706276	+	RAMPAGE_only	5	5	11	0.747277	3.277613	chr1	86706275	86706339	SINE|MIR|MIR3	-	chr1	86704894	86743268	SH3GLB1|ENST00000482504.1	+	86704894,86715723,86719506,86722539,86724312,86728402,86730087,86734601,86735078,86742207,86743127	86704971,86715865,86719635,86722673,86724405,86728441,86730111,86734691,86735179,86742436,86743268	0.909091
gastrocnemius_medialis_female_adult_51_years	chr5	67490662	67490663	67490662	-	RAMPAGE_only	11	11	12	0.815211	3.095795	chr5	67490503	67490858	LTR|ERVL-MaLR|THE1A	-	chr5	67465034	67475592	AC079467.1|ENST00000515184.1	-	67465034,67466872,67467905,67475414	67465327,67466938,67468053,67475592	0.916667
gastrocnemius_medialis_female_adult_51_years	chr10	70424981	70425065	70425025	+	RAMPAGE_only	2	2	14	0.951080	3.546594	chr10	70424911	70425430	LTR|ERVL-MaLR|MLT1F1	-	chr10	70404378	70428618	EIF4EBP2|ENST00000373218.4	+	70404378,70419913,70421715	70404546,70420099,70428618	0.928571
gastrocnemius_medialis_female_adult_51_years	chr6	123106127	123106251	123106133	+	High_confidence	9	16	84	5.706478	4.067618	chr6	123103740	123107191	LINE|L1|L1PA8A	-	chr6	123105803	123112450	STRG.12474.1	+	123105803,123106134,123107201,123112060	123105945,123106288,123107598,123112450	0.976190
gastrocnemius_medialis_female_adult_51_years	chr9	19126413	19126425	19126413	-	RAMPAGE_only	2	2	7	0.475540	2.807355	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19115769	19127576	PLIN2|ENST00000276914.6	-	19115769,19118320,19119649,19120879,19123564,19126113,19126396,19127418	19116649,19118455,19119831,19121165,19123647,19126309,19126448,19127576	1.000000
gastrocnemius_medialis_female_adult_51_years	chr5	95834818	95834920	95834818	+	High_confidence	44	44	236	16.032485	5.372826	chr5	95834683	95834908	SINE|Alu|AluSc	-	chr5	95834699	95835708	STRG.10221.1	+	95834699	95835708	0.991525
gastrocnemius_medialis_female_adult_51_years	chr20	3795750	3795789	3795788	+	High_confidence	22	22	102	6.929294	5.354600	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.990196
gastrocnemius_medialis_female_adult_51_years	chr19	28509014	28509035	28509034	+	High_confidence	9	10	22	1.494554	4.004886	chr19	28508985	28509155	LINE|L2|L2a	-	chr19	28509237	28518728	AC005616.1|ENST00000592931.1	+	28509237,28518300	28509388,28518728	0.772727
gastrocnemius_medialis_female_adult_51_years	chr19	47780107	47780108	47780107	+	High_confidence	16	18	19	1.290751	3.461320	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.947368
gastrocnemius_medialis_female_adult_51_years	chr2	36584049	36584100	36584049	-	High_confidence	7	9	23	1.562488	3.170544	chr2	36584029	36584427	LTR|ERVL|LTR33	+	chr2	36555682	36584058	FEZ2|ENST00000464964.1	-	36555682,36558437,36578596,36581289,36583352,36584029	36555748,36558513,36578865,36581431,36583469,36584058	0.913043
gastrocnemius_medialis_female_adult_51_years	chr1	230856036	230856043	230856036	-	High_confidence	4	4	11	0.747277	2.913977	chr1	230855985	230856233	SINE|MIR|MIRb	+	chr1	230837118	230856036	C1orf198|NM_001136495.1	-	230837118,230843353,230855667,230855877	230839908,230843896,230855718,230856036	1.000000
gastrocnemius_medialis_female_adult_51_years	chr5	150651105	150651435	150651262	+	RAMPAGE_only	9	11	225	15.285208	6.291413	chr5	150651250	150651383	SINE|MIR|MIR3	+	chr5	150640677	150652337	SYNPO|ENST00000519664.1	+	150640677,150647943	150640854,150652337	1.000000
gastrocnemius_medialis_female_adult_51_years	chr6	123105727	123105761	123105727	+	High_confidence	7	7	15	1.019014	2.835238	chr6	123103740	123107191	LINE|L1|L1PA8A	-	chr6	123105803	123112450	STRG.12474.1	+	123105803,123106134,123107201,123112060	123105945,123106288,123107598,123112450	0.933333
gastrocnemius_medialis_female_adult_51_years	chr8	67055199	67055273	67055199	+	RAMPAGE_only	42	47	416	28.260651	6.617766	chr8	67054773	67055502	LINE|L2|L2a	-	chr8	67062425	67093620	CSPP1|ENST00000521919.5	+	67062425,67074242,67076481,67086006,67091802,67093542	67062520,67074351,67076581,67086110,67091883,67093620	0.600962
gastrocnemius_medialis_female_adult_51_years	chr19	39485802	39485803	39485802	+	High_confidence	7	7	8	0.543474	2.521641	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	0.875000
gastrocnemius_medialis_female_adult_51_years	chrX	48683362	48683363	48683362	+	High_confidence	7	9	9	0.611408	2.725481	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.888889
gastrocnemius_medialis_female_adult_51_years	chr12	110936582	110936585	110936584	+	High_confidence	24	43	58	3.940187	5.129280	chr12	110936431	110936780	LTR|ERVL-MaLR|THE1D	+	chr12	110936601	110937451	LINC01405|ENST00000331096.2	+	110936601,110937184	110936698,110937451	0.637931
gastrocnemius_medialis_female_adult_51_years	chr4	3111678	3111696	3111678	+	RAMPAGE_only	12	12	43	2.921173	4.365665	chr4	3111496	3112202	LINE|L1|HAL1	-	chr4	3115328	3121712	HTT|ENST00000506137.1	+	3115328,3116084,3121227	3115445,3116263,3121712	0.883721
gastrocnemius_medialis_female_adult_51_years	chr16	2205748	2205827	2205826	+	High_confidence	7	7	58	3.940187	4.323151	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.982759
gastrocnemius_medialis_female_adult_51_years	chr15	84778258	84778259	84778258	+	High_confidence	6	6	7	0.475540	2.584963	chr15	84778174	84778672	LTR|ERV1|LTR9B	-	chr15	84778259	84802438	ZNF592|ENST00000559607.1	+	84778259,84782656,84790704,84797868,84798314,84798587,84799097,84799841,84801862	84778312,84784895,84790872,84798045,84798474,84798875,84799210,84799977,84802438	0.857143
gastrocnemius_medialis_female_adult_51_years	chr9	5609035	5609054	5609035	-	RAMPAGE_only	23	23	55	3.736384	4.981287	chr9	5608852	5609009	LTR|ERVL|MLT2F	-	chr9	5576904	5600856	STRG.16252.3	-	5576904,5580603,5600809	5577511,5580700,5600856	0.890909
gastrocnemius_medialis_female_adult_51_years	chr8	134572633	134572677	134572676	-	High_confidence	13	13	39	2.649436	4.907072	chr8	134572592	134572743	DNA|TcMar-Mariner|MARNA	-	chr8	134478392	134572647	STRG.15954.3	-	134478392,134509618,134512474,134520882,134532833,134565332,134572545	134478721,134509749,134512601,134521001,134532972,134565421,134572647	0.820513
gastrocnemius_medialis_female_adult_51_years	chr2	237085320	237085333	237085320	+	High_confidence	2	2	8	0.543474	2.750000	chr2	237085222	237085359	LINE|L2|L2	-	chr2	237085311	237100466	COPS8|ENST00000354371.6	+	237085311,237087126,237088604,237089861,237094089,237095821,237096821,237097662	237086042,237087197,237088653,237089994,237094197,237095884,237096869,237100466	1.000000
gastrocnemius_medialis_female_adult_51_years	chr2	44209310	44209319	44209310	+	RAMPAGE_only	3	4	10	0.679343	2.947703	chr2	44209358	44209398	SINE|Alu|Alu	+	chr2	44168909	44231472	PPM1B|ENST00000345249.8	+	44168909,44209209,44217966,44218479,44230412	44169274,44209327,44218078,44218537,44231472	0.500000
gastrocnemius_medialis_female_adult_51_years	chr13	20715579	20715622	20715621	+	High_confidence	53	54	118	8.016242	5.172500	chr13	20715578	20715684	DNA|hAT-Charlie|MER5A	-	chr13	20715601	20723098	STRG.22481.1	+	20715601,20717097,20721635,20722039	20716138,20717369,20721962,20723098	0.974576
gastrocnemius_medialis_female_adult_51_years	chr11	17927620	17927621	17927620	-	RAMPAGE_only	16	16	18	1.222817	3.086049	chr11	17927482	17927673	SINE|MIR|MIR3	+	chr11	17788047	17939632	SERGEF|ENST00000528369.5	-	17788047,17878207,17939476	17788413,17878244,17939632	0.944444
gastrocnemius_medialis_female_adult_51_years	chr6	125214241	125214248	125214247	+	High_confidence	66	80	155	10.529810	6.293460	chr6	125213832	125214305	LTR|ERVL|LTR33	-	chr6	125214260	125248360	STRG.12493.8	+	125214260,125220077,125229117,125248281	125214463,125220193,125229266,125248360	0.832258
gastrocnemius_medialis_female_adult_51_years	chr8	30812418	30812454	30812453	-	High_confidence	6	6	29	1.970093	4.458591	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30744429	30812597	STRG.15144.1	-	30744429,30774678,30786210,30791196,30793916,30794191,30797580,30799545,30812319	30744542,30774930,30786307,30791315,30794078,30794281,30797754,30799755,30812597	0.931034
gastrocnemius_medialis_female_adult_51_years	chr12	109266943	109266968	109266943	+	RAMPAGE_only	6	6	22	1.494554	4.021928	chr12	109266905	109267170	SINE|Alu|AluSx1	-	chr12	109139396	109268223	ACACB|ENST00000377848.7	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260479,109262356,109264231,109265109,109265388,109266235	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260657,109262469,109264386,109265280,109265525,109268223	0.909091
gastrocnemius_medialis_female_adult_51_years	chr20	45833293	45833306	45833293	-	High_confidence	12	13	19	1.290751	3.239098	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.947368
gastrocnemius_medialis_female_adult_51_years	chr12	52087386	52087466	52087465	+	RAMPAGE_only	6	6	27	1.834225	3.873141	chr12	52087220	52087468	LINE|L2|L2	+	chr12	52084745	52108319	OR7E47P|NR_120439.1	+	52084745,52107378	52084829,52108319	0.851852
gastrocnemius_medialis_female_adult_51_years	chr10	80201473	80201490	80201489	-	RAMPAGE_only	8	9	19	1.290751	3.721612	chr10	80201225	80201570	LINE|L2|L2	+	chr10	80155123	80204491	ANXA11|NM_001278408.1	-	80155123,80157640,80157966,80159099,80161934,80163348,80163533,80164052,80166083,80166889,80167225,80168968,80170799,80172806,80176106,80180940,80204238	80155912,80157763,80158025,80159195,80162028,80163405,80163613,80164143,80166197,80166984,80167313,80169358,80170915,80172869,80176155,80181455,80204491	0.736842
gastrocnemius_medialis_female_adult_51_years	chr6	41732680	41732698	41732680	-	RAMPAGE_only	4	4	13	0.883145	3.026987	chr6	41732628	41732733	SINE|MIR|MIR	-	chr6	41686528	41733853	TFEB|ENST00000394283.5	-	41686528,41687752,41687907,41689730,41690662,41691000,41732648	41687169,41687809,41688028,41689811,41690917,41691235,41733853	0.923077
gastrocnemius_medialis_female_adult_51_years	chr1	246639190	246639241	246639190	+	RAMPAGE_only	10	10	28	1.902159	4.521641	chr1	246637152	246639697	LTR|ERV1|HERVH48-int	-	chr1	246569541	246668584	STRG.3048.1	+	246569541,246591511,246618257,246621428,246631893,246633923,246634472,246641748,246641940,246647138,246660198,246665699	246569990,246591941,246618401,246621634,246631924,246634010,246634587,246641770,246642037,246648037,246660334,246668584	0.821429
gastrocnemius_medialis_female_adult_51_years	chr3	14047196	14047206	14047205	-	High_confidence	19	20	35	2.377699	4.197326	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14040965	14046974	STRG.5833.2	-	14040965,14046812	14041628,14046974	0.885714
gastrocnemius_medialis_female_adult_51_years	chr2	26126322	26126362	26126361	+	RAMPAGE_only	5	5	20	1.358685	3.441446	chr2	26126295	26126597	SINE|Alu|AluSz6	+	chr2	26098529	26135068	RAB10|ENST00000473035.1	+	26098529,26098661,26109767,26127143,26127849,26134937	26098577,26098722,26109906,26127233,26127951,26135068	0.750000
gastrocnemius_medialis_female_adult_51_years	chr2	151667805	151667903	151667805	-	RAMPAGE_only	16	17	168	11.412955	5.891635	chr2	151667536	151667759	SINE|Alu|AluJr	-	chr2	151485759	151733156	NEB|ENST00000603639.5	-	151485759,151489970,151490371,151491682,151492097,151492386,151493352,151493774,151494160,151496275,151496940,151497625,151498259,151499297,151501390,151502792,151503348,151505477,151506165,151506908,151508004,151512732,151513579,151514317,151514817,151516458,151518317,151518964,151519657,151524310,151524514,151525162,151525957,151526157,151526917,151527480,151529209,151530993,151531791,151533441,151535690,151537131,151537871,151538139,151540343,151540696,151541446,151545887,151546344,151547428,151547633,151548307,151549635,151551737,151552671,151553397,151553827,151554930,151560591,151561003,151561207,151562109,151562610,151563605,151563822,151565043,151565500,151565715,151567167,151568070,151568315,151568617,151569267,151570080,151570496,151575694,151576150,151579337,151580796,151581482,151582463,151583454,151585506,151586404,151587373,151589888,151591347,151592033,151593015,151594006,151596059,151596957,151597926,151600441,151601900,151602586,151603568,151604559,151606605,151607503,151608472,151609808,151610515,151610761,151612185,151614275,151616001,151617363,151618274,151619450,151620918,151625533,151627001,151627522,151629538,151630714,151631142,151633653,151636226,151639279,151639856,151640354,151642573,151642764,151643149,151643817,151644467,151646129,151650175,151650573,151653991,151655269,151655816,151656152,151657982,151659064,151662134,151663547,151664500,151664758,151665332,151666089,151667803,151669026,151671022,151672368,151674476,151675286,151677564,151677875,151679720,151679917,151680729,151682661,151684777,151687418,151687625,151688291,151690726,151691863,151692058,151692260,151694322,151694521,151695577,151696636,151697147,151697349,151697543,151706880,151709655,151710433,151717415,151723381,151724259,151724856,151725452,151727690,151729614,151733120	151485933,151490077,151490518,151491775,151492281,151492494,151493445,151493867,151494253,151496368,151497033,151497718,151498352,151499390,151501483,151502885,151503441,151505570,151506258,151507013,151508109,151512837,151513693,151514428,151514928,151516563,151518422,151519069,151519768,151524415,151524616,151525273,151526068,151526262,151527022,151527585,151529314,151531101,151531896,151533546,151535795,151537236,151537976,151538244,151540448,151540801,151541551,151545998,151546443,151547533,151547738,151548415,151549740,151551845,151552776,151553502,151554025,151555044,151560699,151561108,151561312,151562214,151562808,151563719,151563930,151565148,151565605,151565820,151567479,151568178,151568417,151568716,151569372,151570392,151570601,151575799,151576354,151579649,151580904,151581587,151582667,151583766,151585614,151586509,151587577,151590200,151591455,151592138,151593219,151594318,151596167,151597062,151598130,151600753,151602008,151602691,151603772,151604871,151606713,151607608,151608676,151610120,151610623,151610866,151612389,151614587,151616109,151617468,151618478,151619762,151621026,151625638,151627205,151627834,151629646,151630819,151631346,151633965,151636334,151639384,151640060,151640666,151642681,151642869,151643353,151644129,151644575,151646234,151650379,151650885,151654099,151655374,151656023,151656464,151658090,151659169,151662341,151663859,151664608,151664863,151665539,151666401,151667911,151669131,151671229,151672680,151674584,151675391,151677771,151678187,151679828,151680022,151680828,151682769,151684975,151687532,151687733,151688396,151690825,151691968,151692166,151692362,151694436,151694629,151695682,151696735,151697252,151697457,151697648,151706997,151709763,151710538,151717520,151723486,151724364,151724961,151725560,151727906,151729656,151733156	1.000000
gastrocnemius_medialis_female_adult_51_years	chr20	20076426	20076435	20076434	-	RAMPAGE_only	535	727	1286	87.363454	5.290619	chr20	20076072	20076574	LTR|ERVL-MaLR|MLT1G1	+	chr20	20075347	20089233	STRG.30550.7	-	20075347,20088851	20080997,20089233	0.969673
gastrocnemius_medialis_female_adult_51_years	chr12	643625	643636	643625	-	High_confidence	318	321	847	57.540315	5.654951	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.974026
gastrocnemius_medialis_female_adult_51_years	chr19	18013272	18013327	18013272	+	RAMPAGE_only	2	2	22	1.494554	4.121928	chr19	18013258	18013441	LINE|L2|L2c	-	chr19	18008169	18014100	ARRDC2|ENST00000593460.1	+	18008169,18012912	18010729,18014100	0.863636
gastrocnemius_medialis_female_adult_51_years	chr11	114070902	114070903	114070902	+	RAMPAGE_only	64	64	69	4.687464	5.289453	chr11	114070912	114071059	SINE|MIR|MIRb	+	chr11	114060565	114250676	ZBTB16|NM_001018011.1	+	114060565,114063210,114156336,114186951,114242166,114247197,114250325	114060584,114064568,114156434,114187038,114242337,114247365,114250676	0.608696
gastrocnemius_medialis_female_adult_51_years	chr15	66401878	66401899	66401878	+	RAMPAGE_only	22	24	42	2.853239	4.834184	chr15	66401474	66401958	LINE|L2|L2c	-	chr15	66386872	66491544	MAP2K1|NM_002755.3	+	66386872,66435026,66436745,66443279,66444655,66481754,66484989,66487227,66489214,66489717,66490501	66387427,66435237,66436892,66443357,66444707,66481879,66485191,66487292,66489276,66489763,66491544	0.952381
gastrocnemius_medialis_female_adult_51_years	chr14	77076158	77076194	77076188	-	High_confidence	9	9	37	2.513567	4.614369	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77074102	77076268	STRG.23889.2	-	77074102,77076104	77074598,77076268	0.594595
gastrocnemius_medialis_female_adult_51_years	chr1	10271518	10271579	10271578	+	RAMPAGE_only	9	9	32	2.173896	4.562500	chr1	10271619	10271796	DNA|hAT-Charlie|MER58A	+	chr1	10232328	10381596	KIF1B|ENST00000620295.2	+	10232328,10256246,10258492,10261904,10267379,10268151,10271501,10272240,10273013,10275427,10276320,10277985,10282321,10291081,10292046,10295085,10295659,10296581,10296896,10297173,10320042,10321708,10323883,10324757,10326110,10334519,10336656,10337073,10337370,10339768,10342049,10343231,10345844,10347760,10348648,10352630,10360928,10361691,10363282,10365099,10365408,10368466,10371140,10374315,10374853,10375254,10378338	10232434,10256323,10258672,10261970,10267558,10268263,10271579,10272306,10273031,10275503,10276399,10278128,10282533,10291161,10292122,10295165,10295766,10296665,10297077,10297246,10320136,10321857,10324062,10324895,10326359,10334638,10336742,10337203,10337533,10339859,10342168,10343287,10345953,10347827,10348733,10352736,10361043,10361825,10363344,10365245,10365648,10368538,10371262,10374465,10375046,10375373,10381596	1.000000
gastrocnemius_medialis_female_adult_51_years	chr22	26512099	26512108	26512099	-	High_confidence	3	4	8	0.543474	2.521641	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	0.875000
gastrocnemius_medialis_female_adult_51_years	chr8	86417214	86417236	86417235	+	High_confidence	19	19	66	4.483661	5.538910	chr8	86417268	86417372	DNA|hAT-Charlie|MER58D	+	chr8	86417222	86431665	WWP1|ENST00000521079.1	+	86417222,86425222,86427642,86430696,86431405,86431614	86417279,86425318,86427817,86430751,86431490,86431665	0.545455
gastrocnemius_medialis_female_adult_51_years	chr11	64226142	64226180	64226158	-	High_confidence	201	207	939	63.790267	7.089048	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.966986
gastrocnemius_medialis_female_adult_51_years	chr14	49771652	49771673	49771672	+	RAMPAGE_only	3	3	6	0.407606	2.584963	chr14	49771716	49772002	SINE|Alu|AluSz	+	chr14	49768800	49778259	KLHDC2|ENST00000553538.5	+	49768800,49771593,49774560,49777838,49778177	49769091,49771673,49774678,49777954,49778259	0.500000
gastrocnemius_medialis_female_adult_51_years	chr11	65181205	65181274	65181222	+	High_confidence	6	6	32	2.173896	4.163910	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	1.000000
gastrocnemius_medialis_female_adult_51_years	chr10	31512911	31512933	31512932	+	RAMPAGE_only	11	11	35	2.377699	3.645711	chr10	31512583	31513543	LINE|L2|L2a	-	chr10	31321620	31529814	ZEB1|NM_001323671.1	+	31321620,31387123,31461036,31495775,31502347,31510672,31514602,31520125,31523932,31526671	31321851,31387266,31461237,31495838,31502509,31510875,31514708,31521936,31524113,31529814	0.971429
gastrocnemius_medialis_female_adult_51_years	chr9	34233920	34233921	34233920	+	RAMPAGE_only	64	65	78	5.298872	5.567429	chr9	34233518	34234003	LINE|L2|L2a	-	chr9	34220438	34252522	UBAP1|ENST00000359544.2	+	34220438,34220907,34234215,34241184,34249778,34250657,34251391	34220467,34220948,34234340,34242108,34249961,34250759,34252522	0.948718
gastrocnemius_medialis_female_adult_51_years	chr2	10844395	10844421	10844420	+	RAMPAGE_only	15	16	23	1.562488	3.840812	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10878266	10885118	LOC101929733|NR_110575.1	+	10878266,10884833	10878444,10885118	0.565217
gastrocnemius_medialis_female_adult_51_years	chr7	134527596	134527597	134527596	+	High_confidence	37	37	37	2.513567	4.411892	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.945946
gastrocnemius_medialis_female_adult_51_years	chr2	206161352	206161466	206161465	+	High_confidence	5	8	54	3.668450	4.856196	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	0.870370
gastrocnemius_medialis_female_adult_51_years	chr12	123494910	123494955	123494954	-	RAMPAGE_only	26	26	82	5.570609	3.770998	chr12	123494917	123495375	LTR|ERVL-MaLR|MLT1K	+	chr12	123472166	123484974	RILPL1|ENST00000544468.1	-	123472166,123484179,123484814	123472682,123484272,123484974	0.939024
gastrocnemius_medialis_female_adult_51_years	chr22	24011756	24011757	24011756	+	High_confidence	10	10	10	0.679343	3.321928	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.900000
gastrocnemius_medialis_female_adult_51_years	chr19	35039013	35039032	35039013	+	RAMPAGE_only	15	18	34	2.309765	4.366729	chr19	35038952	35039084	SINE|MIR|MIR3	-	chr19	35036898	35040449	SCN1B|ENST00000602150.2	+	35036898,35039796	35039706,35040449	0.941176
gastrocnemius_medialis_female_adult_51_years	chr4	158173024	158173025	158173024	-	High_confidence	19	19	20	1.358685	3.892407	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158124603	158173027	STRG.9207.3	-	158124603,158130785,158155610,158170465,158172872	158127614,158131012,158155825,158171599,158173027	0.950000
gastrocnemius_medialis_female_adult_51_years	chr16	30373014	30373016	30373014	+	High_confidence	11	20	20	1.358685	3.821928	chr16	30372675	30373134	LINE|L2|L2b	+	chr16	30372317	30377991	MYLPF|NM_001324458.1	+	30372317,30372877,30374821,30375819,30376144,30376422,30376619,30377653,30377795	30372360,30373016,30374860,30375912,30376220,30376527,30376698,30377702,30377991	1.000000
gastrocnemius_medialis_female_adult_51_years	chr5	180830482	180830483	180830482	+	High_confidence	7	7	7	0.475540	2.521641	chr5	180830359	180830506	LTR|ERVL-MaLR|MLT1D	+	chr5	180830755	180834779	STRG.11112.4	+	180830755,180834311	180830829,180834779	0.857143
gastrocnemius_medialis_female_adult_51_years	chrX	11351669	11351676	11351675	-	High_confidence	47	47	70	4.755398	5.419977	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11138826	11351724	STRG.32217.4	-	11138826,11142232,11143979,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11351385	11139530,11142313,11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11351724	0.942857
gastrocnemius_medialis_female_adult_51_years	chr18	8608041	8608049	8608041	+	RAMPAGE_only	9	9	26	1.766291	4.286790	chr18	8607829	8608179	SINE|Alu|AluJr	+	chr18	8609436	8639381	RAB12|ENST00000649141.1	+	8609436,8624937,8633188,8635532,8636252,8638148	8609953,8624998,8633327,8635622,8636357,8639381	0.923077
gastrocnemius_medialis_female_adult_51_years	chr10	95273515	95273516	95273515	-	High_confidence	11	11	13	0.883145	3.392747	chr10	95273485	95273544	SINE|MIR|MIR3	+	chr10	95263875	95273406	PDLIM1|ENST00000493949.1	-	95263875,95268777,95271632,95273036	95264063,95268862,95271784,95273406	0.846154
gastrocnemius_medialis_female_adult_51_years	chr7	7689204	7689239	7689238	+	High_confidence	8	8	41	2.785305	4.536784	chr7	7689061	7689544	LTR|ERVL-MaLR|MLT1L	+	chr7	7689201	7721987	STRG.13163.7	+	7689201,7720912	7689460,7721987	0.926829
gastrocnemius_medialis_female_adult_51_years	chr8	143460683	143460711	143460710	-	High_confidence	6	7	21	1.426619	3.921928	chr8	143460375	143461127	LINE|L1|L1MB4	+	chr8	143437658	143460740	STRG.16023.2	-	143437658,143440040,143440935,143460602	143438087,143440363,143441120,143460740	0.952381
gastrocnemius_medialis_female_adult_51_years	chr2	23524247	23524262	23524247	-	High_confidence	7	8	19	1.290751	3.572431	chr2	23524079	23524260	SINE|MIR|MIRc	-	chr2	23501711	23524344	STRG.3263.1	-	23501711,23506054,23523950	23502153,23507232,23524344	0.684211
gastrocnemius_medialis_female_adult_51_years	chr2	85694129	85694132	85694131	+	High_confidence	46	85	88	5.978215	5.794513	chr2	85694093	85694142	DNA|hAT|MER53	-	chr2	85694290	85698851	GNLY|NM_012483.3	+	85694290,85694752,85695319,85695957,85697505,85698563	85694470,85694996,85695423,85696056,85697677,85698851	0.954545
gastrocnemius_medialis_female_adult_51_years	chr6	44126712	44126734	44126712	-	High_confidence	15	15	26	1.766291	3.767894	chr6	44126578	44126686	LINE|CR1|X7A_LINE	-	chr6	44113453	44126674	MRPL14|NM_001318769.1	-	44113453,44116540,44126632	44114209,44116629,44126674	0.923077
gastrocnemius_medialis_female_adult_51_years	chr4	76079012	76079030	76079019	+	RAMPAGE_only	6	6	26	1.766291	3.573661	chr4	76078798	76079093	SINE|Alu|AluY	+	chr4	76075250	76082278	ART3|ENST00000510423.1	+	76075250,76075880,76081823	76075277,76075958,76082278	0.923077
gastrocnemius_medialis_female_adult_51_years	chr7	134548940	134548941	134548940	+	High_confidence	44	44	59	4.008121	5.396690	chr7	134548478	134549049	LTR|ERV1|LTR6A	+	chr7	134549096	134579840	AKR1B15|NM_001080538.2	+	134549096,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579840	0.966102
gastrocnemius_medialis_female_adult_51_years	chr8	11795578	11795579	11795578	+	High_confidence	187	188	204	13.858588	5.133113	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.980392
gastrocnemius_medialis_female_adult_53_years	chr20	45833251	45833252	45833251	-	High_confidence	116	116	117	6.621642	4.582288	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.991453
gastrocnemius_medialis_female_adult_53_years	chr20	20088941	20088970	20088950	-	High_confidence	10	13	32	1.811047	3.519903	chr20	20088660	20089017	LINE|RTE-X|L4_B_Mam	-	chr20	20072297	20089173	STRG.27520.6	-	20072297,20088366,20088851	20080997,20088435,20089173	0.781250
gastrocnemius_medialis_female_adult_53_years	chr4	119217597	119217625	119217623	+	RAMPAGE_only	2	3	10	0.565952	3.321928	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212635	119294746	USP53|ENST00000274030.10	+	119212635,119214069,119217549,119235289,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119212873,119214222,119217673,119235411,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119294746	1.000000
gastrocnemius_medialis_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	23	23	27	1.528071	4.323856	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.925926
gastrocnemius_medialis_female_adult_53_years	chr18	46087042	46087065	46087042	-	High_confidence	11	11	20	1.131905	3.403702	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.800000
gastrocnemius_medialis_female_adult_53_years	chr1	8022436	8022468	8022467	-	RAMPAGE_only	5	6	9	0.509357	2.750000	chr1	8022378	8022538	SINE|MIR|MIRc	-	chr1	8014039	8026296	ERRFI1|ENST00000487559.1	-	8014039,8015307,8015494,8026157	8014396,8015400,8015692,8026296	0.888889
gastrocnemius_medialis_female_adult_53_years	chr17	63943752	63943767	63943752	-	RAMPAGE_only	3	3	9	0.509357	2.500000	chr17	63943607	63943718	DNA|hAT-Tip100|MER91A	-	chr17	63938553	63972918	SCN4A|ENST00000435607.3	-	63938553,63942825,63943745,63944672,63945006,63945359,63947044,63947889,63948610,63949392,63951423,63957161,63959264,63961192,63963671,63964467,63966101,63966480,63968022,63971161,63971721,63972135,63972351,63972568	63941993,63943096,63943850,63944810,63945060,63945638,63947167,63948063,63948765,63949528,63951900,63957518,63959438,63961431,63963825,63964677,63966243,63966544,63968355,63971253,63971850,63972225,63972470,63972918	0.888889
gastrocnemius_medialis_female_adult_53_years	chr2	55618850	55618851	55618850	-	High_confidence	6	9	9	0.509357	2.725481	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	1.000000
gastrocnemius_medialis_female_adult_53_years	chr1	246618297	246618298	246618297	+	RAMPAGE_only	10	10	11	0.622548	2.921928	chr1	246618215	246618359	SINE|MIR|MIR3	-	chr1	246591487	246668584	STRG.2891.2	+	246591487,246618257,246621428,246631893,246633923,246634472,246641748,246641940,246647138,246660198,246665699	246591941,246618401,246621634,246631924,246634010,246634587,246641770,246642037,246648037,246660334,246668584	0.909091
gastrocnemius_medialis_female_adult_53_years	chr12	46243209	46243236	46243231	-	RAMPAGE_only	2	2	9	0.509357	2.750000	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.888889
gastrocnemius_medialis_female_adult_53_years	chrX	136168194	136168195	136168194	+	High_confidence	5	5	8	0.452762	3.000000	chrX	136168049	136168241	SINE|MIR|MIR	-	chrX	136168193	136208575	FHL1|ENST00000434885.5	+	136168193,136169906,136206406,136207015,136207791,136208454	136168267,136169980,136206588,136207190,136207961,136208575	1.000000
gastrocnemius_medialis_female_adult_53_years	chr1	86744277	86744383	86744359	+	RAMPAGE_only	5	5	29	1.641262	4.185230	chr1	86744306	86744545	LINE|L2|L2b	-	chr1	86704575	86748184	SH3GLB1|ENST00000370558.8	+	86704575,86715723,86719506,86722539,86724312,86734601,86735078,86742207,86743127	86704971,86715865,86719635,86722673,86724405,86734691,86735179,86742436,86748184	1.000000
gastrocnemius_medialis_female_adult_53_years	chr12	10705207	10705248	10705247	-	High_confidence	49	49	189	10.696499	4.948453	chr12	10705091	10705385	SINE|Alu|AluSc	-	chr12	10699477	10704438	YBX3|ENST00000536823.5	-	10699477,10701253,10701959,10704050	10699654,10701353,10702134,10704438	0.984127
gastrocnemius_medialis_female_adult_53_years	chr1	51650991	51651014	51650991	+	RAMPAGE_only	4	4	11	0.622548	2.913977	chr1	51650929	51651267	LINE|L2|L2c	-	chr1	51617113	51776912	OSBPL9|ENST00000489990.5	+	51617113,51651990,51669433,51714002,51745535,51746709,51748368,51750144,51765821,51772069,51772604,51776832	51617221,51652041,51669512,51714079,51745631,51746757,51748398,51750195,51765981,51772182,51772723,51776912	0.545455
gastrocnemius_medialis_female_adult_53_years	chr1	182390125	182390165	182390125	-	High_confidence	2	2	10	0.565952	3.169925	chr1	182389985	182390241	SINE|Alu|AluSx	+	chr1	182382893	182390304	GLUL|ENST00000491322.1	-	182382893,182388571	182387292,182390304	0.900000
gastrocnemius_medialis_female_adult_53_years	chr11	74003604	74003933	74003614	-	RAMPAGE_only	22	24	375	21.223212	5.899384	chr11	74003163	74003565	LINE|L2|L2c	-	chr11	74000446	74009085	STRG.17815.3	-	74000446,74004483,74005729,74006168,74006916,74008977	74004007,74004585,74005933,74006379,74007161,74009085	0.997333
gastrocnemius_medialis_female_adult_53_years	chr6	136584527	136584628	136584527	-	High_confidence	36	36	109	6.168880	4.700972	chr6	136584318	136584690	LTR|ERVL-MaLR|THE1B	-	chr6	136580333	136584507	MAP3K5|ENST00000463140.1	-	136580333,136583554,136584401	136580406,136583740,136584507	0.880734
gastrocnemius_medialis_female_adult_53_years	chr11	74003071	74003460	74003370	-	RAMPAGE_only	17	18	202	11.432237	5.500954	chr11	74003163	74003565	LINE|L2|L2c	-	chr11	74000446	74009085	STRG.17815.3	-	74000446,74004483,74005729,74006168,74006916,74008977	74004007,74004585,74005933,74006379,74007161,74009085	0.995050
gastrocnemius_medialis_female_adult_53_years	chr3	194486609	194486625	194486609	-	High_confidence	1	1	7	0.396167	2.584963	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.857143
gastrocnemius_medialis_female_adult_53_years	chr17	63976869	63976912	63976911	-	RAMPAGE_only	10	10	59	3.339119	5.183508	chr17	63976743	63977022	LINE|L2|L2-3_Crp	+	chr17	63938553	63972918	SCN4A|ENST00000435607.3	-	63938553,63942825,63943745,63944672,63945006,63945359,63947044,63947889,63948610,63949392,63951423,63957161,63959264,63961192,63963671,63964467,63966101,63966480,63968022,63971161,63971721,63972135,63972351,63972568	63941993,63943096,63943850,63944810,63945060,63945638,63947167,63948063,63948765,63949528,63951900,63957518,63959438,63961431,63963825,63964677,63966243,63966544,63968355,63971253,63971850,63972225,63972470,63972918	0.525424
gastrocnemius_medialis_female_adult_53_years	chr1	31376356	31376357	31376356	-	High_confidence	136	139	139	7.866737	4.886869	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365720	31376357	STRG.570.4	-	31365720,31367392,31369384,31372941,31376355	31365939,31367494,31369557,31373041,31376357	0.935252
gastrocnemius_medialis_female_adult_53_years	chr16	2757847	2757854	2757847	+	High_confidence	3	3	7	0.396167	2.584963	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.857143
gastrocnemius_medialis_female_adult_53_years	chr12	10710653	10710654	10710653	-	High_confidence	44	44	52	2.942952	4.473564	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.557692
gastrocnemius_medialis_female_adult_53_years	chr6	41732665	41732681	41732665	-	RAMPAGE_only	3	3	8	0.452762	2.521641	chr6	41732628	41732733	SINE|MIR|MIR	-	chr6	41686528	41733853	TFEB|ENST00000394283.5	-	41686528,41687752,41687907,41689730,41690662,41691000,41732648	41687169,41687809,41688028,41689811,41690917,41691235,41733853	0.875000
gastrocnemius_medialis_female_adult_53_years	chr9	90997037	90997038	90997037	+	High_confidence	6	7	9	0.509357	3.000000	chr9	90996845	90997203	LTR|ERVL-MaLR|THE1B	+	chr9	90997053	91001871	AL355607.2|ENST00000563268.1	+	90997053,90997595,91000769	90997124,90997817,91001871	0.777778
gastrocnemius_medialis_female_adult_53_years	chr3	14047196	14047206	14047205	-	High_confidence	15	21	37	2.094024	4.134469	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14040191	14047206	STRG.5288.1	-	14040191,14046812	14041628,14047206	0.864865
gastrocnemius_medialis_female_adult_53_years	chr3	115110180	115110207	115110206	-	RAMPAGE_only	7	7	17	0.962119	3.734522	chr3	115109927	115110224	SINE|Alu|AluSx	+	chr3	114338652	115100292	STRG.6228.2	-	114338652,114350273,114380216,114380776,114389004,114500351,114693527,114801100,114900303,114974365,115071218,115100174	114339426,114351878,114380404,114380940,114389105,114500391,114693575,114801174,114900342,114974416,115071414,115100292	1.000000
gastrocnemius_medialis_female_adult_53_years	chr6	150327021	150327024	150327021	+	High_confidence	15	15	32	1.811047	4.601410	chr6	150326901	150327196	LTR|ERVL-MaLR|THE1B	+	chr6	150327032	150353906	STRG.11243.2	+	150327032,150339767,150340601,150345521,150347683	150327115,150339826,150340719,150345633,150353906	0.593750
gastrocnemius_medialis_female_adult_53_years	chr10	102368817	102368825	102368824	+	RAMPAGE_only	3	3	8	0.452762	2.500000	chr10	102368824	102368910	SINE|MIR|MIRc	+	chr10	102245531	102382899	GBF1|ENST00000369983.3	+	102245531,102258928,102260049,102344050,102351255,102351842,102352457,102353599,102358038,102358505,102359269,102360183,102361021,102361717,102362474,102363255,102363709,102365396,102366382,102367084,102367477,102368217,102368738,102369210,102369710,102369860,102370173,102370383,102370706,102375358,102376271,102376559,102376934,102379283,102379520,102379852,102380248,102380505,102381126,102382055	102245781,102259034,102260116,102344182,102351374,102351951,102352518,102353654,102358186,102358729,102359435,102360395,102361120,102361912,102362664,102363396,102363798,102365599,102366506,102367210,102367560,102368454,102368832,102369387,102369775,102369984,102370245,102370478,102370860,102375584,102376432,102376800,102377140,102379434,102379651,102379954,102380362,102380686,102381255,102382899	1.000000
gastrocnemius_medialis_female_adult_53_years	chr6	123105865	123105907	123105865	+	High_confidence	46	47	145	8.206309	3.918174	chr6	123103740	123107191	LINE|L1|L1PA8A	-	chr6	123106070	123112493	STRG.11043.2	+	123106070,123107201,123112060	123106288,123107598,123112493	0.965517
gastrocnemius_medialis_female_adult_53_years	chr2	96894219	96894248	96894219	-	High_confidence	3	3	9	0.509357	2.947703	chr2	96894203	96894258	SINE|MIR|MIRb	+	chr2	96876025	96895142	FAM178B|ENST00000470789.5	-	96876025,96877889,96878415,96893925,96895060	96876308,96878042,96878493,96894051,96895142	1.000000
gastrocnemius_medialis_female_adult_53_years	chr15	68284865	68284889	68284888	+	RAMPAGE_only	4	5	9	0.509357	3.169925	chr15	68284715	68285060	LTR|ERVL-MaLR|THE1B	+	chr15	68289254	68290073	FEM1B|ENST00000566739.1	+	68289254,68289606	68289361,68290073	1.000000
gastrocnemius_medialis_female_adult_53_years	chr8	17934766	17934795	17934766	+	RAMPAGE_only	3	4	11	0.622548	2.646439	chr8	17934728	17935264	LTR|Gypsy?|LTR85a	-	chr8	17937175	17939016	PCM1|ENST00000518985.1	+	17937175,17938838	17937379,17939016	0.818182
gastrocnemius_medialis_female_adult_53_years	chr17	20227323	20227352	20227323	+	High_confidence	2	2	6	0.339571	2.584963	chr17	20227258	20227350	LINE|L1|L1PA17	-	chr17	20227382	20239020	STRG.24140.5	+	20227382,20231757,20232199,20236859	20227620,20231831,20232405,20239020	1.000000
gastrocnemius_medialis_female_adult_53_years	chr17	4143196	4143215	4143199	+	High_confidence	41	43	96	5.433142	5.228576	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.979167
gastrocnemius_medialis_female_adult_53_years	chr10	45000503	45000520	45000503	+	High_confidence	4	5	14	0.792333	3.521641	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
gastrocnemius_medialis_female_adult_53_years	chr2	173221900	173222129	173222064	+	RAMPAGE_only	8	8	105	5.942499	5.519406	chr2	173222007	173222227	SINE|Alu|AluJo	+	chr2	173075841	173227146	MAP3K20|ENST00000338983.7	+	173075841,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173221149	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173227146	1.000000
gastrocnemius_medialis_female_adult_53_years	chr16	87381453	87381509	87381469	-	RAMPAGE_only	11	11	33	1.867643	4.562500	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87320548	87383748	STRG.23594.1	-	87320548,87330158,87333885,87335303,87336154,87342876,87343597,87347173,87358410,87360294,87383404	87321626,87331510,87334286,87335457,87336264,87342951,87343765,87347250,87358497,87360366,87383748	0.727273
gastrocnemius_medialis_female_adult_53_years	chr1	53889408	53889426	53889408	-	High_confidence	5	6	12	0.679143	3.095795	chr1	53889348	53889564	SINE|MIR|MIRb	+	chr1	53851718	53889733	YIPF1|ENST00000464950.6	-	53851718,53855000,53860055,53866199,53866757,53871371,53878314,53878641,53883112,53888906,53889712	53852270,53855051,53860153,53866382,53866924,53871488,53878402,53878722,53883276,53888986,53889733	0.916667
gastrocnemius_medialis_female_adult_53_years	chr12	53033909	53034022	53034021	+	RAMPAGE_only	97	97	219	12.394356	6.668478	chr12	53034069	53034237	DNA|hAT-Charlie|MER20B	+	chr12	53006456	53040462	EIF4B|ENST00000416762.7	+	53006456,53016472,53018797,53021805,53022492,53027781,53028014,53033805,53034611,53037408,53038355,53039237,53039629,53040142	53006496,53016610,53019006,53021860,53022627,53027919,53028188,53034034,53034709,53037622,53038411,53039343,53039702,53040462	0.986301
gastrocnemius_medialis_female_adult_53_years	chr19	9140393	9140428	9140393	+	High_confidence	25	25	98	5.546333	5.105653	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.918367
gastrocnemius_medialis_female_adult_53_years	chr15	25346017	25346051	25346023	-	High_confidence	64	69	185	10.470118	6.124380	chr15	25345979	25347018	LINE|L1|L1ME2	+	chr15	25333727	25346031	UBE3A|ENST00000636667.1	-	25333727,25340084,25345979	25339257,25340228,25346031	0.972973
gastrocnemius_medialis_female_adult_53_years	chr12	101670337	101670409	101670408	+	RAMPAGE_only	87	129	519	29.372925	6.829387	chr12	101670426	101670659	LINE|CR1|L3b	+	chr12	101666202	101685811	MYBPC1|ENST00000549608.1	+	101666202,101667731,101670320,101673426,101675291,101677234,101678101,101680342,101685581	101666797,101667899,101670409,101673622,101675431,101677394,101678238,101680529,101685811	0.994220
gastrocnemius_medialis_female_adult_53_years	chr9	121313981	121314021	121314020	+	RAMPAGE_only	29	33	98	5.546333	5.148507	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
gastrocnemius_medialis_female_adult_53_years	chr10	133369990	133370029	133370014	-	RAMPAGE_only	2	2	11	0.622548	3.121928	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.909091
gastrocnemius_medialis_female_adult_53_years	chr19	15256182	15256226	15256197	-	RAMPAGE_only	2	2	12	0.679143	3.277613	chr19	15256082	15256220	LINE|L1|L1M5	-	chr19	15235518	15280451	BRD4|ENST00000263377.6	-	15235518,15238742,15239058,15239391,15239658,15239909,15242899,15244230,15244709,15254151,15255296,15256063,15256963,15263419,15264403,15265353,15267415,15268904,15272814,15280263	15238445,15238980,15239264,15239522,15239821,15240022,15243487,15244600,15244762,15254262,15255592,15256263,15257173,15263548,15264766,15265643,15267551,15269042,15273133,15280451	0.916667
gastrocnemius_medialis_female_adult_53_years	chr12	102351356	102351360	102351356	-	High_confidence	4	4	11	0.622548	2.732159	chr12	102350797	102351351	LTR|ERVL|MLT2A2	-	chr12	102326717	102351509	STRG.19482.1	-	102326717,102350886	102327271,102351509	0.818182
gastrocnemius_medialis_female_adult_53_years	chr14	27612576	27612577	27612576	+	High_confidence	10	11	11	0.622548	3.277613	chr14	27612284	27612881	LTR|ERVL|LTR66	+	chr14	27612587	27639636	LINC00645|ENST00000557359.5	+	27612587,27613420,27634243,27636419	27612677,27613496,27634344,27639636	0.909091
gastrocnemius_medialis_female_adult_53_years	chr1	184590737	184590808	184590807	+	RAMPAGE_only	4	7	31	1.754452	2.762267	chr1	184590844	184591183	DNA|TcMar-Tigger|MER2B	+	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.967742
gastrocnemius_medialis_female_adult_53_years	chr14	77736987	77737070	77737011	-	High_confidence	5	5	37	2.094024	3.000366	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.918919
gastrocnemius_medialis_female_adult_53_years	chr2	96638013	96638023	96638016	-	High_confidence	5	6	12	0.679143	3.095795	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.750000
gastrocnemius_medialis_female_adult_53_years	chr2	219425186	219425187	219425186	+	RAMPAGE_only	31	31	31	1.754452	4.518397	chr2	219424901	219425196	SINE|Alu|AluSg	-	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	1.000000
gastrocnemius_medialis_female_adult_53_years	chr3	57267760	57267782	57267781	+	RAMPAGE_only	7	9	18	1.018714	3.191612	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	1.000000
gastrocnemius_medialis_female_adult_53_years	chr12	21818161	21818243	21818161	-	RAMPAGE_only	14	15	48	2.716571	4.360879	chr12	21817882	21818136	LINE|L1|L1PA8A	-	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	0.937500
gastrocnemius_medialis_female_adult_53_years	chr7	158863386	158863402	158863386	+	RAMPAGE_only	4	4	10	0.565952	2.921928	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	1.000000
gastrocnemius_medialis_female_adult_53_years	chr4	185513274	185513496	185513458	-	RAMPAGE_only	13	13	223	12.620737	4.499742	chr4	185513376	185513506	DNA|hAT-Charlie|MER102b	-	chr4	185512093	185535491	PDLIM3|ENST00000504011.5	-	185512093,185514702,185523361,185525019,185535341	185514337,185514890,185523446,185525171,185535491	0.995516
gastrocnemius_medialis_female_adult_53_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	30	31	59	3.339119	4.123771	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.949153
gastrocnemius_medialis_female_adult_53_years	chr2	27662214	27662218	27662214	-	RAMPAGE_only	3	3	6	0.339571	2.584963	chr2	27662206	27662384	LINE|L2|L2c	-	chr2	27653062	27663639	SUPT7L|ENST00000405491.5	-	27653062,27655364,27657344,27660983,27662178,27663328	27653747,27655602,27657669,27661601,27662281,27663639	1.000000
gastrocnemius_medialis_female_adult_53_years	chr1	179877510	179877516	179877515	-	High_confidence	6	6	10	0.565952	3.169925	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179833943	179877772	STRG.2262.1	-	179833943,179846106,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179836403,179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877772	0.800000
gastrocnemius_medialis_female_adult_53_years	chr10	91347770	91347780	91347770	+	RAMPAGE_only	2	2	8	0.452762	2.750000	chr10	91347814	91348020	LTR|ERVL-MaLR|MLT1K	+	chr10	91410284	91463664	HECTD2|NM_173497.3	+	91410284,91425280,91460426,91461253,91462094	91410576,91425410,91460565,91461356,91463664	0.500000
gastrocnemius_medialis_female_adult_53_years	chr1	225700962	225700995	225700994	+	High_confidence	3	3	14	0.792333	2.873141	chr1	225700876	225701240	LTR|ERVL-MaLR|MLT1L	-	chr1	225700663	225716413	STRG.2658.1	+	225700663,225710502,225716045	225701106,225710568,225716413	0.928571
gastrocnemius_medialis_female_adult_53_years	chr1	182390033	182390057	182390056	-	High_confidence	6	6	14	0.792333	3.521641	chr1	182389985	182390241	SINE|Alu|AluSx	+	chr1	182382893	182390304	GLUL|ENST00000491322.1	-	182382893,182388571	182387292,182390304	0.928571
gastrocnemius_medialis_female_adult_53_years	chr1	1655445	1655475	1655445	-	RAMPAGE_only	2	2	9	0.509357	3.000000	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.777778
gastrocnemius_medialis_female_adult_53_years	chr5	67490662	67490663	67490662	-	RAMPAGE_only	13	13	16	0.905524	3.155639	chr5	67490503	67490858	LTR|ERVL-MaLR|THE1A	-	chr5	67465034	67475592	AC079467.1|ENST00000515184.1	-	67465034,67466872,67467905,67475414	67465327,67466938,67468053,67475592	0.812500
gastrocnemius_medialis_female_adult_53_years	chr6	33748581	33748605	33748604	-	High_confidence	4	4	12	0.679143	3.084963	chr6	33748484	33748667	SINE|Alu|AluJb	+	chr6	33722396	33748912	STRG.10425.5	-	33722396,33725440,33726730,33728086,33735277,33739132,33748270	33723187,33725616,33726906,33728300,33735655,33739261,33748912	0.916667
gastrocnemius_medialis_female_adult_53_years	chr12	7502522	7502555	7502522	-	High_confidence	1	1	7	0.396167	2.584963	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.857143
gastrocnemius_medialis_female_adult_53_years	chr7	102822456	102822461	102822456	-	RAMPAGE_only	5	5	10	0.565952	2.641604	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.900000
gastrocnemius_medialis_female_adult_53_years	chr8	17692204	17692226	17692225	-	High_confidence	4	4	15	0.848928	3.324863	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.733333
gastrocnemius_medialis_female_adult_53_years	chr17	59027882	59027902	59027882	-	RAMPAGE_only	21	21	57	3.225928	5.073080	chr17	59027492	59028205	LINE|L2|L2a	+	chr17	58998201	59106721	TRIM37|ENST00000262294.11	-	58998201,59001597,59012327,59015609,59017295,59028414,59031895,59041812,59047682,59049177,59051213,59056874,59061031,59062566,59064354,59070822,59075646,59079753,59081096,59084001,59088290,59091299,59104292,59106440	58999459,59001714,59012446,59015799,59017424,59028723,59032090,59041898,59047819,59049393,59051328,59057054,59061108,59062648,59064405,59070947,59075714,59079877,59081219,59084089,59088407,59091340,59104394,59106721	0.982456
gastrocnemius_medialis_female_adult_53_years	chr7	107580245	107580267	107580264	+	High_confidence	676	679	3550	200.913074	6.494223	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.985352
gastrocnemius_medialis_female_adult_53_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	27	29	32	1.811047	4.241729	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.906250
gastrocnemius_medialis_female_adult_53_years	chr13	27445107	27445116	27445115	-	RAMPAGE_only	3	3	7	0.396167	2.584963	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.857143
gastrocnemius_medialis_female_adult_53_years	chr2	11755745	11755746	11755745	+	RAMPAGE_only	7	7	10	0.565952	2.503258	chr2	11755720	11756020	SINE|Alu|AluSc8	-	chr2	11746633	11826513	STRG.3024.2	+	11746633,11765532,11767762,11771371,11773619,11776085,11779518,11782200,11783828,11784885,11787073,11788386,11791913,11795407,11802906,11804422,11805069,11815087,11819483,11820410,11824631	11746671,11765733,11767858,11771679,11773745,11776193,11779645,11782507,11783922,11785076,11787167,11788456,11792006,11795487,11803033,11804571,11805156,11815240,11819598,11820514,11826513	0.900000
gastrocnemius_medialis_female_adult_53_years	chr10	95276712	95276832	95276721	-	RAMPAGE_only	14	16	122	6.904618	5.396177	chr10	95276590	95276825	SINE|MIR|MIR	-	chr10	95263875	95273406	PDLIM1|ENST00000493949.1	-	95263875,95268777,95271632,95273036	95264063,95268862,95271784,95273406	0.967213
gastrocnemius_medialis_female_adult_53_years	chr9	19126416	19126435	19126434	-	RAMPAGE_only	15	18	38	2.150619	4.584604	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19108374	19127475	STRG.14294.3	-	19108374,19116358,19118320,19119649,19120879,19123564,19126113,19126396,19127418	19108762,19116649,19118455,19119831,19121165,19123647,19126309,19126448,19127475	0.973684
gastrocnemius_medialis_female_adult_53_years	chr10	102365525	102365582	102365581	+	RAMPAGE_only	3	3	15	0.848928	3.378783	chr10	102365629	102365874	SINE|Alu|AluJb	+	chr10	102245531	102382899	GBF1|ENST00000369983.3	+	102245531,102258928,102260049,102344050,102351255,102351842,102352457,102353599,102358038,102358505,102359269,102360183,102361021,102361717,102362474,102363255,102363709,102365396,102366382,102367084,102367477,102368217,102368738,102369210,102369710,102369860,102370173,102370383,102370706,102375358,102376271,102376559,102376934,102379283,102379520,102379852,102380248,102380505,102381126,102382055	102245781,102259034,102260116,102344182,102351374,102351951,102352518,102353654,102358186,102358729,102359435,102360395,102361120,102361912,102362664,102363396,102363798,102365599,102366506,102367210,102367560,102368454,102368832,102369387,102369775,102369984,102370245,102370478,102370860,102375584,102376432,102376800,102377140,102379434,102379651,102379954,102380362,102380686,102381255,102382899	0.933333
gastrocnemius_medialis_female_adult_53_years	chr10	103395884	103395900	103395899	-	High_confidence	4	4	9	0.509357	2.500000	chr10	103395615	103395992	LINE|RTE-X|L4_C_Mam	+	chr10	103389049	103396074	ATP5MD|ENST00000369811.5	-	103389049,103392190,103392370,103395745	103389166,103392283,103392466,103396074	0.888889
gastrocnemius_medialis_female_adult_53_years	chr19	45423280	45423304	45423280	-	High_confidence	2	2	11	0.622548	3.277613	chr19	45423071	45423243	SINE|MIR|MIR3	-	chr19	45413676	45423485	ERCC1|ENST00000589381.5	-	45413676,45413962,45414860,45416820,45419097,45420323,45423269	45413745,45414034,45414960,45416897,45419197,45420427,45423485	0.818182
gastrocnemius_medialis_female_adult_53_years	chr3	14047155	14047156	14047155	-	High_confidence	23	23	26	1.471476	4.053661	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14040191	14047206	STRG.5288.1	-	14040191,14046812	14041628,14047206	0.884615
gastrocnemius_medialis_female_adult_53_years	chr8	56559496	56559497	56559496	-	High_confidence	30	30	38	2.150619	4.859641	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.842105
gastrocnemius_medialis_female_adult_53_years	chr8	11795569	11795570	11795569	+	High_confidence	151	154	162	9.168428	3.851708	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.962963
gastrocnemius_medialis_female_adult_53_years	chr5	95838234	95838276	95838275	+	High_confidence	6	6	20	1.131905	3.260828	chr5	95838186	95838666	LTR|Gypsy|MamGyp-int	+	chr5	95838232	95860133	STRG.9111.16	+	95838232,95848840,95852791,95856877	95838443,95852714,95852926,95860133	0.900000
gastrocnemius_medialis_female_adult_53_years	chr15	84836120	84836121	84836120	+	RAMPAGE_only	6	6	6	0.339571	2.584963	chr15	84835841	84837447	LINE|L2|L2a	-	chr15	84817379	84877805	STRG.22327.2	+	84817379,84827483,84838979,84839701,84856391,84859242,84859775,84860036,84862634,84863551,84864441,84867316,84868110	84817595,84827605,84839097,84840932,84858555,84859390,84859903,84860072,84862915,84863640,84864665,84867365,84877805	1.000000
gastrocnemius_medialis_female_adult_53_years	chr17	8310240	8310255	8310240	+	High_confidence	2	3	8	0.452762	2.521641	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.875000
gastrocnemius_medialis_female_adult_53_years	chr7	2242922	2242923	2242922	+	High_confidence	6	6	6	0.339571	2.584963	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
gastrocnemius_medialis_female_adult_53_years	chr16	88883369	88883392	88883381	+	High_confidence	3	4	9	0.509357	3.000000	chr16	88883339	88883513	LTR|ERV1|MER57B2	+	chr16	88883271	88887136	AC092384.2|ENST00000565053.1	+	88883271,88884620,88885741	88884218,88884844,88887136	0.888889
gastrocnemius_medialis_female_adult_53_years	chr22	26512099	26512113	26512099	-	High_confidence	4	4	12	0.679143	2.732159	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	0.916667
gastrocnemius_medialis_female_adult_53_years	chrX	150875807	150875808	150875807	+	RAMPAGE_only	30	32	41	2.320405	4.712815	chrX	150875627	150875980	LTR|ERVL-MaLR|THE1B	+	chrX	150915812	150920938	AF274573.1|ENST00000437772.5	+	150915812,150917112,150919768,150920785	150915836,150917283,150919940,150920938	0.585366
gastrocnemius_medialis_female_adult_53_years	chr8	123395562	123395563	123395562	-	High_confidence	6	6	8	0.452762	2.750000	chr8	123395475	123395613	SINE|MIR|MIR	+	chr8	123320680	123396379	ATAD2|ENST00000519124.5	-	123320680,123322937,123325892,123328189,123333877,123334199,123336372,123337624,123339310,123344883,123346085,123346617,123347091,123348182,123349284,123356388,123357561,123359220,123359576,123361538,123369057,123369820,123370902,123371235,123371669,123372636,123380528,123396182	123321175,123323066,123326026,123328579,123334021,123334322,123336532,123337821,123339446,123345069,123346272,123346750,123347406,123348273,123349444,123356477,123357736,123359336,123359685,123361646,123369175,123370022,123370990,123371338,123371835,123372686,123380677,123396379	1.000000
gastrocnemius_medialis_female_adult_53_years	chr1	210504230	210504231	210504230	-	High_confidence	28	28	39	2.207214	4.682162	chr1	210504152	210504248	LINE|L2|L2a	+	chr1	210499995	210504222	STRG.2551.1	-	210499995,210503593,210504151	210500746,210503778,210504222	0.948718
gastrocnemius_medialis_female_adult_53_years	chr8	32927976	32927977	32927976	+	RAMPAGE_only	34	38	49	2.773166	4.779985	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.877551
gastrocnemius_medialis_female_adult_53_years	chr12	45292825	45292890	45292846	+	High_confidence	26	28	104	5.885904	5.404230	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.961538
gastrocnemius_medialis_female_adult_53_years	chr2	85584081	85584082	85584081	+	High_confidence	13	13	13	0.735738	3.085055	chr2	85584038	85584148	LINE|L2|L2b	+	chr2	85584407	85593388	VAMP5|NM_006634.2	+	85584407,85591724,85592947	85584493,85591862,85593388	0.846154
gastrocnemius_medialis_female_adult_53_years	chr11	64226158	64226201	64226158	-	High_confidence	133	135	640	36.220948	7.295379	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.995313
gastrocnemius_medialis_female_adult_53_years	chr12	10707726	10707727	10707726	-	RAMPAGE_only	5	5	8	0.452762	2.750000	chr12	10707049	10707845	LINE|L2|L2	+	chr12	10699426	10710120	YBX3|ENST00000546164.5	-	10699426,10701253,10701959,10704059,10709907	10699654,10701353,10702134,10704148,10710120	1.000000
gastrocnemius_medialis_female_adult_53_years	chr1	63548003	63548037	63548003	+	High_confidence	8	8	27	1.528071	4.053661	chr1	63547557	63548048	LTR|ERVL-MaLR|MLT1H	-	chr1	63548008	63571128	EFCAB7|ENST00000460678.6	+	63548008,63551047,63551724,63557112,63561708,63568309,63571020	63548350,63551090,63551834,63557247,63561857,63568519,63571128	0.814815
gastrocnemius_medialis_female_adult_53_years	chr10	122029057	122029064	122029057	+	RAMPAGE_only	6	6	16	0.905524	3.500000	chr10	122029026	122029558	LINE|L1|L1MD	-	chr10	122021992	122083007	TACC2|ENST00000491540.1	+	122021992,122033093,122050437,122082655	122022014,122033153,122050550,122083007	0.875000
gastrocnemius_medialis_female_adult_53_years	chr3	179740129	179740146	179740145	+	RAMPAGE_only	3	3	8	0.452762	2.750000	chr3	179740114	179740200	SINE|MIR|MIRc	+	chr3	179721563	179761151	USP13|ENST00000497155.1	+	179721563,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179761111	179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179761151	1.000000
gastrocnemius_medialis_female_adult_53_years	chr3	139344529	139344560	139344537	+	High_confidence	10	12	41	2.320405	4.515312	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.975610
gastrocnemius_medialis_female_adult_53_years	chr14	81427123	81427199	81427138	-	High_confidence	4	4	31	1.754452	3.213094	chr14	81426946	81427161	SINE|MIR|MIR	-	chr14	81260649	81427212	STON2|NM_033104.3	-	81260649,81276900,81370987,81395893,81398294,81427101	81270872,81278739,81371185,81396178,81398580,81427212	1.000000
gastrocnemius_medialis_female_adult_53_years	chr12	10702260	10702261	10702260	-	High_confidence	35	38	44	2.490190	3.281518	chr12	10702238	10702535	SINE|Alu|AluSz	+	chr12	10699316	10702475	YBX3|ENST00000540975.5	-	10699316,10701253,10701959,10702411	10699654,10701353,10702134,10702475	0.977273
gastrocnemius_medialis_female_adult_53_years	chr6	89037270	89037282	89037270	-	RAMPAGE_only	4	4	8	0.452762	2.521641	chr6	89036919	89037735	LINE|L1|L1M1	+	chr6	88610271	88963721	RNGTT|ENST00000369485.8	-	88610271,88614271,88678352,88769773,88801563,88844356,88849754,88853628,88890494,88891805,88904714,88906364,88928984,88929163,88941070,88963345	88612882,88614395,88678419,88769874,88801632,88844521,88849826,88853764,88890596,88891915,88904955,88906440,88929073,88929267,88941180,88963721	0.500000
gastrocnemius_medialis_female_adult_53_years	chr11	114237162	114237163	114237162	+	High_confidence	14	14	15	0.848928	3.664498	chr11	114237034	114237223	DNA|hAT-Tip100|MER91A	+	chr11	114237206	114250557	ZBTB16|ENST00000535379.1	+	114237206,114242166,114247197,114250325	114237340,114242337,114247365,114250557	0.866667
gastrocnemius_medialis_female_adult_53_years	chr9	83806303	83806318	83806303	-	RAMPAGE_only	4	4	12	0.679143	2.855389	chr9	83806166	83806294	LINE|L2|L2c	-	chr9	83739424	83817632	GKAP1|ENST00000376365.7	-	83739424,83741951,83742529,83748308,83753257,83780381,83784714,83788600,83799184,83806301,83816995,83817516	83739744,83742029,83742600,83748372,83753359,83780404,83784838,83788678,83799328,83806560,83817127,83817632	1.000000
gastrocnemius_medialis_female_adult_53_years	chr3	62150053	62150072	62150063	-	High_confidence	8	9	36	2.037428	4.593400	chr3	62149964	62150083	LINE|L2|L2a	+	chr3	62136954	62150058	STRG.5972.1	-	62136954,62149845	62138214,62150058	0.638889
gastrocnemius_medialis_female_adult_53_years	chr2	43293834	43293878	43293834	-	High_confidence	7	9	35	1.980833	4.650572	chr2	43293507	43294203	LINE|CR1|L3	-	chr2	43286984	43293066	THADA|ENST00000485018.1	-	43286984,43291695,43292833	43287061,43292222,43293066	0.685714
gastrocnemius_medialis_female_adult_53_years	chr20	20076426	20076435	20076434	-	RAMPAGE_only	583	851	1621	91.740871	5.020886	chr20	20076072	20076574	LTR|ERVL-MaLR|MLT1G1	+	chr20	20072297	20089173	STRG.27520.6	-	20072297,20088366,20088851	20080997,20088435,20089173	0.972856
gastrocnemius_medialis_female_adult_53_years	chr19	38506475	38506536	38506535	+	RAMPAGE_only	5	5	31	1.754452	4.706891	chr19	38506584	38506680	SINE|MIR|MIR	+	chr19	38496214	38565228	RYR1|ENST00000594335.5	+	38496214,38496408,38496859,38499107,38499634,38499907,38500605,38500820,38502506,38502879,38504219,38504747,38505002,38505308,38505805,38506302,38506470,38506828,38507711,38510497,38510659,38512071,38512244,38515025,38516086,38517358,38519213,38523027,38523216,38525331,38526992,38527646,38528305,38528598,38528950,38532489,38532670,38534719,38535140,38535315,38535996,38537879,38543346,38543531,38543770,38546444,38548232,38561112,38564958	38496329,38496541,38496954,38499243,38499821,38500016,38500726,38500990,38502727,38502970,38504360,38504911,38505081,38505398,38505946,38506377,38506546,38506952,38507827,38510565,38510781,38512132,38512483,38515107,38516217,38517691,38519454,38523115,38523309,38525502,38527052,38527784,38528418,38528695,38529057,38532541,38532736,38534819,38535220,38535392,38536070,38537960,38543435,38543660,38543875,38546526,38548420,38561454,38565228	0.935484
gastrocnemius_medialis_female_adult_53_years	chr7	134549094	134549114	134549094	+	High_confidence	5	5	20	1.131905	3.471354	chr7	134549070	134551552	LTR|ERV1|HERVS71-int	+	chr7	134549096	134579840	AKR1B15|NM_001080538.2	+	134549096,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579840	0.750000
gastrocnemius_medialis_female_adult_53_years	chr15	42414795	42415558	42415259	-	RAMPAGE_only	34	34	604	34.183520	6.803378	chr15	42415122	42415421	SINE|Alu|AluSq2	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	0.998344
gastrocnemius_medialis_female_adult_53_years	chr10	62056853	62056864	62056856	+	RAMPAGE_only	6	6	14	0.792333	3.392747	chr10	62056749	62056941	DNA|hAT-Charlie|MER58A	+	chr10	62049210	62096948	ARID5B|NM_001244638.1	+	62049210,62050887,62057116,62059242,62069699,62085701,62090861	62049483,62051000,62057318,62059295,62069797,62085900,62096948	0.928571
gastrocnemius_medialis_female_adult_53_years	chr19	12800915	12801011	12800915	-	High_confidence	6	6	43	2.433595	4.570609	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.930233
gastrocnemius_medialis_female_adult_53_years	chr7	134549156	134549165	134549156	+	High_confidence	7	9	16	0.905524	3.625000	chr7	134549070	134551552	LTR|ERV1|HERVS71-int	+	chr7	134549135	134579875	AKR1B15|ENST00000457545.6	+	134549135,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579875	0.687500
gastrocnemius_medialis_female_adult_53_years	chr2	187513633	187513641	187513633	-	High_confidence	2	2	8	0.452762	2.521641	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187464229	187513641	TFPI|ENST00000392365.5	-	187464229,187467752,187484123,187484810,187488336,187496880,187503647,187513615	187467042,187467932,187484216,187484987,187488375,187497078,187503770,187513641	0.875000
gastrocnemius_medialis_female_adult_53_years	chr1	1655409	1655411	1655410	-	RAMPAGE_only	6	11	16	0.905524	3.506891	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	0.875000
gastrocnemius_medialis_female_adult_53_years	chr14	27529239	27529240	27529239	+	RAMPAGE_only	19	19	21	1.188500	3.826875	chr14	27529044	27529416	LTR|ERVL-MaLR|THE1B	+	chr14	27612587	27639636	LINC00645|ENST00000557359.5	+	27612587,27613420,27634243,27636419	27612677,27613496,27634344,27639636	0.571429
gastrocnemius_medialis_female_adult_53_years	chr7	7566500	7566534	7566514	-	High_confidence	151	171	466	26.373378	5.699994	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.993562
gastrocnemius_medialis_female_adult_53_years	chr10	102777816	102777817	102777816	+	RAMPAGE_only	4	4	7	0.396167	2.521641	chr10	102777561	102777864	SINE|Alu|AluSx	-	chr10	102776248	102816267	WBP1L|ENST00000369889.5	+	102776248,102797992,102809892,102812594	102776417,102798095,102810054,102816267	1.000000
gastrocnemius_medialis_female_adult_53_years	chr6	149895954	149895968	149895967	-	High_confidence	10	13	45	2.546785	4.593934	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	1.000000
gastrocnemius_medialis_female_adult_53_years	chr10	30999446	30999458	30999446	-	High_confidence	3	3	9	0.509357	3.000000	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.555556
gastrocnemius_medialis_female_adult_53_years	chrX	150879867	150879868	150879867	-	RAMPAGE_only	10	10	13	0.735738	3.180833	chrX	150879626	150879948	SINE|Alu|AluJb	+	chrX	150768728	150873167	STRG.30122.2	-	150768728,150770303,150776173,150777443,150793690,150795205,150795417,150814861,150816006,150831230,150872939	150769101,150770369,150776293,150777482,150793756,150795289,150795486,150814936,150816078,150831293,150873167	0.923077
gastrocnemius_medialis_female_adult_53_years	chr5	109383417	109383460	109383417	-	High_confidence	2	2	8	0.452762	2.521641	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.875000
gastrocnemius_medialis_female_adult_53_years	chr3	135965679	135965749	135965723	+	High_confidence	29	52	180	10.187142	6.039008	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.994444
gastrocnemius_medialis_female_adult_53_years	chr12	46243267	46243313	46243267	-	RAMPAGE_only	4	4	20	1.131905	3.646439	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	1.000000
gastrocnemius_medialis_female_adult_53_years	chr16	84139251	84139275	84139251	-	RAMPAGE_only	2	2	9	0.509357	2.750000	chr16	84139153	84139637	LTR|ERVL-MaLR|MLT1D	+	chr16	84130318	84144438	HSDL1|ENST00000568857.5	-	84130318,84131101,84135543,84144290	84130431,84131327,84135605,84144438	0.666667
gastrocnemius_medialis_female_adult_53_years	chr14	90258079	90258080	90258079	+	RAMPAGE_only	12	12	18	1.018714	3.350209	chr14	90258077	90258330	SINE|MIR|MIRb	+	chr14	90256553	90263944	PSMC1|ENST00000555679.5	+	90256553,90259159,90260114,90263317,90263661	90256600,90259213,90260211,90263442,90263944	1.000000
gastrocnemius_medialis_female_adult_53_years	chr12	10702444	10702514	10702513	-	High_confidence	41	43	172	9.734380	5.338667	chr12	10702238	10702535	SINE|Alu|AluSz	+	chr12	10699316	10702475	YBX3|ENST00000540975.5	-	10699316,10701253,10701959,10702411	10699654,10701353,10702134,10702475	1.000000
gastrocnemius_medialis_female_adult_53_years	chr2	11681436	11681462	11681461	+	High_confidence	3	3	9	0.509357	2.503258	chr2	11681255	11681626	LTR|ERVL-MaLR|MSTA	+	chr2	11681460	11683328	AC106875.1|ENST00000435175.1	+	11681460,11682190	11681492,11683328	1.000000
gastrocnemius_medialis_female_adult_53_years	chr10	6737490	6737491	6737490	+	High_confidence	7	7	7	0.396167	2.521641	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	1.000000
gastrocnemius_medialis_female_adult_53_years	chr11	107719695	107719701	107719695	-	High_confidence	455	480	680	38.484758	5.290995	chr11	107719646	107719884	LTR|Gypsy?|LTR88c	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.982353
gastrocnemius_medialis_female_adult_53_years	chr1	20685290	20685307	20685306	-	High_confidence	3	3	8	0.452762	2.750000	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.875000
gastrocnemius_medialis_female_adult_53_years	chr1	222733308	222733403	222733348	+	RAMPAGE_only	8	8	27	1.528071	3.778424	chr1	222733044	222733380	SINE|Alu|AluSx	-	chr1	222713320	222735196	BROX|NM_001288580.1	+	222713320,222715683,222718924,222719262,222724091,222725449,222727167,222728742,222729619,222730026,222731356,222732627	222713416,222715800,222719031,222719359,222724164,222725555,222727257,222728828,222729701,222730177,222731516,222735196	1.000000
gastrocnemius_medialis_female_adult_53_years	chr3	42152928	42152946	42152928	+	RAMPAGE_only	1	1	7	0.396167	2.584963	chr3	42152928	42152996	SINE|MIR|MIR1_Amn	+	chr3	42149358	42184757	TRAK1|ENST00000418790.5	+	42149358,42151334,42176813,42184684	42149599,42151432,42176890,42184757	0.571429
gastrocnemius_medialis_female_adult_53_years	chr3	125538450	125538468	125538462	-	RAMPAGE_only	2	2	10	0.565952	3.169925	chr3	125538274	125538421	SINE|MIR|MIR3	-	chr3	125528857	125595090	OSBPL11|ENST00000296220.5	-	125528857,125531860,125538450,125547405,125552180,125560378,125563697,125567393,125576188,125578959,125579864,125582909,125594636	125530580,125532014,125538633,125547592,125552679,125560519,125563843,125567595,125576365,125579039,125580040,125582978,125595090	0.900000
gastrocnemius_medialis_female_adult_53_years	chr2	86695119	86695150	86695119	-	RAMPAGE_only	3	3	18	1.018714	3.690117	chr2	86695006	86695595	LTR|ERV1|LTR10A	+	chr2	86603392	86623877	RNF103|NM_005667.3	-	86603392,86612158,86620329,86622660	86605418,86612274,86620469,86623877	0.666667
gastrocnemius_medialis_female_adult_53_years	chr12	102351132	102351142	102351141	-	High_confidence	31	33	49	2.773166	4.637586	chr12	102350797	102351351	LTR|ERVL|MLT2A2	-	chr12	102326717	102351509	STRG.19482.1	-	102326717,102350886	102327271,102351509	0.816327
gastrocnemius_medialis_female_adult_53_years	chr9	113522462	113522486	113522482	+	RAMPAGE_only	3	5	13	0.735738	3.180833	chr9	113522277	113522493	SINE|MIR|MIRc	-	chr9	113517269	113583690	RGS3|ENST00000496113.1	+	113517269,113517540,113522929,113529220,113536795,113583449	113517306,113517624,113523041,113529264,113536918,113583690	0.692308
gastrocnemius_medialis_female_adult_53_years	chr2	219222058	219222059	219222058	-	High_confidence	10	12	13	0.735738	2.855389	chr2	219221951	219222030	SINE|MIR|MIRb	-	chr2	219209771	219222738	AC068946.2|ENST00000446716.5	-	219209771,219210229,219210380,219210710,219212386,219213007,219213240,219213438,219213589,219213825,219214120,219214388,219214960,219215996,219216363,219217669,219218124,219220746,219221079,219222049,219222271,219222644	219210046,219210298,219210475,219210823,219212491,219213065,219213326,219213502,219213666,219213951,219214186,219214498,219215082,219216180,219216832,219217807,219220452,219220892,219221302,219222167,219222450,219222738	0.923077
gastrocnemius_medialis_female_adult_53_years	chr3	152317444	152317445	152317444	+	RAMPAGE_only	77	77	104	5.885904	4.475646	chr3	152317330	152317619	SINE|Alu|AluSz	-	chr3	152300197	152459302	MBNL1|ENST00000464596.5	+	152300197,152414940,152432716,152445281,152447619,152459270	152300367,152415111,152432920,152445539,152447773,152459302	0.807692
gastrocnemius_medialis_female_adult_53_years	chr16	74485810	74485834	74485810	-	RAMPAGE_only	4	4	10	0.565952	2.921928	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74467758	74477533	STRG.23472.7	-	74467758,74468945,74469984,74471172,74472348,74474545,74477395	74467848,74469063,74470073,74471286,74472634,74474632,74477533	0.700000
gastrocnemius_medialis_female_adult_53_years	chr12	109266943	109267280	109267060	+	RAMPAGE_only	41	41	499	28.241021	6.060420	chr12	109266905	109267170	SINE|Alu|AluSx1	-	chr12	109139396	109268223	ACACB|ENST00000377848.7	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260479,109262356,109264231,109265109,109265388,109266235	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260657,109262469,109264386,109265280,109265525,109268223	1.000000
gastrocnemius_medialis_female_adult_53_years	chr2	113117970	113117976	113117970	+	High_confidence	4	7	13	0.735738	3.085055	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.923077
gastrocnemius_medialis_female_adult_53_years	chr8	67055199	67055273	67055220	+	RAMPAGE_only	70	115	537	30.391640	6.418450	chr8	67054773	67055502	LINE|L2|L2a	-	chr8	67062425	67093620	CSPP1|ENST00000521919.5	+	67062425,67074242,67076481,67086006,67091802,67093542	67062520,67074351,67076581,67086110,67091883,67093620	0.664804
gastrocnemius_medialis_female_adult_53_years	chr1	179856097	179856173	179856097	-	RAMPAGE_only	9	12	71	4.018261	4.953470	chr1	179855896	179856189	SINE|Alu|AluSz	+	chr1	179833943	179877772	STRG.2262.1	-	179833943,179846106,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179836403,179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877772	1.000000
gastrocnemius_medialis_female_adult_53_years	chr20	45825284	45825285	45825284	-	RAMPAGE_only	9	9	12	0.679143	2.594907	chr20	45825009	45825275	SINE|Alu|AluJr	-	chr20	45823213	45827314	TNNC2|NM_003279.2	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827314	0.916667
gastrocnemius_medialis_female_adult_53_years	chr8	67055081	67055109	67055108	+	High_confidence	3	3	7	0.396167	2.807355	chr8	67054773	67055502	LINE|L2|L2a	-	chr8	67055209	67055410	STRG.13517.1	+	67055209	67055410	0.714286
gastrocnemius_medialis_female_adult_53_years	chr6	56674395	56674412	56674411	-	RAMPAGE_only	6	6	11	0.622548	3.121928	chr6	56674293	56674596	SINE|Alu|AluSx	-	chr6	56638935	56693303	DST|ENST00000521104.1	-	56638935,56639449,56639695,56639928,56640142,56641946,56642409,56645865,56646086,56648569,56650925,56651131,56670640,56692387	56639363,56639611,56639773,56640057,56640605,56642101,56642503,56645993,56646182,56648689,56651032,56651244,56670807,56693303	0.909091
gastrocnemius_medialis_female_adult_53_years	chr1	12283315	12283342	12283341	+	High_confidence	5	5	11	0.622548	2.913977	chr1	12283362	12283402	LINE|L2|L2	+	chr1	12283434	12373788	VPS13D|ENST00000646917.1	+	12283434,12288222,12290997,12293523,12299201,12304505,12308430,12311453,12311812,12314114,12318071,12319496,12321808,12322535,12323705,12327647,12329828,12333225,12335704,12338230,12341782,12342898,12345373,12346604,12348822,12349163,12353973,12355898,12356397,12362719,12363071,12368467,12369466,12373749	12283736,12288313,12291124,12293704,12299384,12304728,12308641,12311625,12311925,12314327,12318337,12319630,12321964,12322746,12323780,12327854,12329918,12333366,12335827,12338305,12341885,12343051,12345509,12346652,12348973,12349374,12354221,12356090,12356524,12362850,12363247,12368591,12369702,12373788	1.000000
gastrocnemius_medialis_female_adult_53_years	chr1	204116525	204116652	204116600	+	High_confidence	4	4	33	1.867643	4.306075	chr1	204116612	204116693	LINE|RTE-BovB|MamRTE1	+	chr1	204116506	204122917	SOX13|ENST00000480326.1	+	204116506,204117121,204117592,204121870,204122236,204122853	204116679,204117190,204117707,204121985,204122399,204122917	0.969697
gastrocnemius_medialis_female_adult_53_years	chr22	26484045	26484080	26484045	+	High_confidence	5	5	13	0.735738	2.688722	chr22	26484072	26484276	SINE|MIR|MIRb	+	chr22	26483883	26491938	SRRD|NM_001013694.2	+	26483883,26486022,26488028,26488389,26490043,26491024,26491462	26484099,26486063,26488288,26488488,26490198,26491070,26491938	0.846154
gastrocnemius_medialis_female_adult_53_years	chr2	27305774	27305801	27305800	+	RAMPAGE_only	3	3	13	0.735738	3.085055	chr2	27305831	27306026	SINE|MIR|MIRb	+	chr2	27282461	27307439	TRIM54|ENST00000296098.4	+	27282461,27298566,27299244,27299529,27304958,27305583,27306079,27306212,27306455,27306886	27282899,27298739,27299416,27299655,27305054,27305817,27306102,27306337,27306542,27307439	1.000000
gastrocnemius_medialis_female_adult_53_years	chr20	50131130	50131140	50131139	-	High_confidence	6	6	14	0.792333	3.521641	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	1.000000
gastrocnemius_medialis_female_adult_53_years	chr4	184768316	184768420	184768328	-	RAMPAGE_only	27	27	148	8.376094	6.075024	chr4	184768056	184768306	SINE|MIR|MIRc	-	chr4	184755600	184766702	ACSL1|ENST00000503407.5	-	184755600,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621	184757265,184757706,184757920,184760500,184762493,184763255,184764925,184765986,184766702	0.797297
gastrocnemius_medialis_female_adult_53_years	chr7	43881919	43881949	43881919	-	High_confidence	4	4	16	0.905524	3.077820	chr7	43881785	43881943	LINE|L2|L2	+	chr7	43878943	43881896	URGCP|ENST00000467410.1	-	43878943,43881658	43879260,43881896	0.500000
gastrocnemius_medialis_female_adult_53_years	chr12	46266488	46266495	46266488	-	High_confidence	119	130	198	11.205856	5.594811	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.979798
gastrocnemius_medialis_female_adult_53_years	chr22	40845086	40845091	40845086	-	High_confidence	3	3	8	0.452762	2.807355	chr22	40845003	40845314	DNA|hAT-Charlie|Charlie5	+	chr22	40830874	40844890	ST13|ENST00000413424.5	-	40830874,40832086,40832568,40835559,40835802,40840625,40844838	40830956,40832216,40832671,40835670,40835887,40840692,40844890	0.875000
gastrocnemius_medialis_female_adult_53_years	chr1	33021455	33021456	33021455	-	RAMPAGE_only	5	6	7	0.396167	2.521641	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	1.000000
gastrocnemius_medialis_female_adult_53_years	chr7	7555304	7555367	7555304	-	High_confidence	12	12	82	4.640809	4.950429	chr7	7555240	7555694	LTR|ERVL|LTR16A	+	chr7	7552736	7554749	AC004982.2|ENST00000609307.1	-	7552736,7554687	7552922,7554749	0.500000
gastrocnemius_medialis_female_adult_53_years	chr19	38376013	38376033	38376032	+	RAMPAGE_only	31	32	89	5.036976	5.196181	chr19	38375972	38376110	SINE|MIR|MIR	-	chr19	38374758	38383824	PSMD8|ENST00000602911.5	+	38374758,38376159,38376351,38379239,38380898,38382116,38383252	38374961,38376232,38376454,38379405,38380999,38382228,38383824	0.966292
gastrocnemius_medialis_female_adult_53_years	chr1	226542738	226542739	226542738	-	High_confidence	314	325	337	19.072593	5.568081	chr1	226542461	226543018	LTR|ERVL|LTR66	-	chr1	226535269	226542760	STRG.2674.1	-	226535269,226541136,226542638	226538699,226541255,226542760	0.958457
gastrocnemius_medialis_female_adult_53_years	chr5	38468484	38468485	38468484	-	High_confidence	27	28	37	2.094024	4.443569	chr5	38468426	38468568	SINE|MIR|MIRc	-	chr5	38466166	38468473	STRG.8579.1	-	38466166,38468238	38466483,38468473	0.783784
gastrocnemius_medialis_female_adult_53_years	chr2	201458835	201458853	201458835	+	RAMPAGE_only	3	3	10	0.565952	2.725481	chr2	201458879	201459004	SINE|Alu|FLAM_C	+	chr2	201451795	201480846	STRADB|ENST00000392249.6	+	201451795,201454745,201458783,201469952,201472954,201474646,201475618,201477618,201478086,201478356,201479488,201480007	201451938,201454852,201458864,201470052,201473076,201474755,201475742,201477790,201478191,201478601,201479531,201480846	0.900000
gastrocnemius_medialis_female_adult_53_years	chr19	47780106	47780108	47780107	+	High_confidence	13	18	20	1.131905	3.684184	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	1.000000
gastrocnemius_medialis_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	462	480	987	55.859494	5.893068	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.978723
gastrocnemius_medialis_female_adult_53_years	chr21	46358346	46358383	46358346	+	RAMPAGE_only	9	9	16	0.905524	3.875000	chr21	46358285	46358486	LINE|CR1|L3	-	chr21	46348238	46445437	STRG.28527.4	+	46348238,46349011,46349683,46351428,46353103,46353986,46355451,46356973,46363479,46366583,46381693,46385831,46388741,46389198,46390669,46391163,46394503,46397264,46398013,46398234,46399589,46401550,46402330,46411188,46412836,46416068,46418203,46421969,46425830,46427621,46428394,46430009,46430506,46431528,46435903,46436978,46438163,46440082,46440854,46442496,46443809,46444693,46445283	46348325,46349186,46349820,46351540,46353326,46354068,46355626,46357191,46363934,46367139,46381840,46385983,46388884,46389431,46390832,46391376,46394536,46397494,46398130,46398255,46399796,46401721,46402483,46412067,46412992,46416839,46418306,46422124,46425971,46427795,46428590,46430232,46430657,46432215,46436148,46437081,46438337,46440202,46441084,46442573,46443948,46444821,46445437	1.000000
gastrocnemius_medialis_female_adult_53_years	chrX	2321585	2321639	2321600	+	High_confidence	7	8	49	2.773166	4.703525	chrX	2321387	2321730	LTR|ERVL-MaLR|MLT1A	+	chrX	2321263	2341232	STRG.29206.1	+	2321263,2326017,2326831,2329398,2337504	2321916,2326181,2329126,2329525,2341232	0.918367
gastrocnemius_medialis_female_adult_53_years	chr5	151687233	151687252	151687250	-	High_confidence	7	13	30	1.697857	4.323231	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151662487	151687234	STRG.9721.1	-	151662487,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687234	0.966667
gastrocnemius_medialis_female_adult_53_years	chr15	65244454	65244457	65244454	-	RAMPAGE_only	4	5	8	0.452762	2.521641	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.875000
gastrocnemius_medialis_female_adult_53_years	chr3	48924739	48924780	48924744	+	High_confidence	6	6	15	0.848928	3.093069	chr3	48924715	48924993	SINE|Alu|AluSc8	-	chr3	48924715	48945181	ARIH2|ENST00000463204.5	+	48924715,48927461,48945135	48924839,48927813,48945181	0.866667
gastrocnemius_medialis_female_adult_53_years	chr12	77980141	77980145	77980141	+	RAMPAGE_only	7	7	13	0.735738	2.873141	chr12	77979813	77980297	LTR|ERV1|LOR1a	-	chr12	77966275	78006766	NAV3|ENST00000550503.1	+	77966275,77968518,77998336,78006418	77966301,77968702,77998476,78006766	1.000000
gastrocnemius_medialis_female_adult_53_years	chr6	159680684	159682196	159681931	-	RAMPAGE_only	362	364	6658	376.811054	7.940470	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	0.999399
gastrocnemius_medialis_female_adult_53_years	chr15	90420223	90420260	90420223	+	RAMPAGE_only	4	4	11	0.622548	2.646439	chr15	90420174	90420357	SINE|MIR|MIRb	-	chr15	90426151	90492616	STRG.22400.3	+	90426151,90429588,90431220,90433718,90439331,90440501,90441505,90443393,90448572,90449558,90452774,90453131,90454427,90456151,90466000,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90482701,90483360,90484219,90486029,90486953,90487494,90491332,90492544	90426266,90429666,90431252,90433795,90439399,90440615,90441684,90443478,90448736,90449643,90452938,90453292,90454552,90456315,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90482749,90483593,90484352,90486132,90487089,90487582,90491545,90492616	0.909091
gastrocnemius_medialis_female_adult_53_years	chr1	19344359	19344412	19344364	-	RAMPAGE_only	4	4	19	1.075309	3.572431	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.894737
gastrocnemius_medialis_female_adult_53_years	chr9	81689516	81689524	81689519	-	High_confidence	603	603	1272	71.989135	5.911312	chr9	81689312	81689527	LTR|ERV1|MER52D	-	chr9	81583682	81689535	TLE1|NM_001303103.1	-	81583682,81584447,81585504,81587680,81590804,81593024,81610219,81611768,81613376,81615981,81616645,81620440,81633347,81634096,81652183,81653973,81685675,81685832,81687333,81688216	81584305,81584524,81585655,81587828,81591052,81593274,81610296,81611959,81613521,81616134,81616699,81620557,81633364,81634301,81652288,81654036,81685720,81685896,81687434,81689535	0.982704
gastrocnemius_medialis_female_adult_53_years	chr9	125337297	125337315	125337297	+	RAMPAGE_only	2	2	7	0.396167	2.521641	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125302306	125342234	GAPVD1|ENST00000436712.2	+	125302306,125305062,125307412,125307690,125309928,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176,125342218	125302826,125305149,125307547,125307880,125310009,125312612,125321499,125323923,125326589,125330218,125332060,125332629,125337095,125337591,125341264,125342234	0.714286
gastrocnemius_medialis_female_adult_53_years	chr10	103133167	103133171	103133170	+	High_confidence	11	12	21	1.188500	3.975418	chr10	103132990	103133273	LTR|ERVL-MaLR|THE1B	+	chr10	103133192	103137487	STRG.16531.1	+	103133192	103137487	1.000000
gastrocnemius_medialis_female_adult_53_years	chr7	44619050	44619051	44619050	+	RAMPAGE_only	13	13	15	0.848928	3.640224	chr7	44618793	44619481	LTR|ERVL|MER21A	+	chr7	44606638	44709066	OGDH|ENST00000222673.5	+	44606638,44624316,44645326,44647656,44666735,44673786,44674410,44675177,44675969,44681719,44693824,44694423,44696024,44696428,44696913,44697369,44697603,44698191,44700140,44701542,44707224,44707581,44707878	44606653,44624565,44645518,44647759,44666851,44673941,44674557,44675268,44676149,44681848,44694004,44694576,44696127,44696557,44697064,44697497,44697782,44698263,44700269,44701615,44707388,44707736,44709066	0.933333
gastrocnemius_medialis_female_adult_53_years	chr9	39810023	39810034	39810023	-	High_confidence	179	182	498	28.184426	5.862163	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803392	39810013	STRG.14460.2	-	39803392,39809485,39809730	39803859,39809615,39810013	0.917671
gastrocnemius_medialis_female_adult_53_years	chr3	9948373	9948438	9948373	+	High_confidence	2	2	11	0.622548	2.663533	chr3	9948329	9948507	SINE|Alu|AluJb	-	chr3	9947403	9954787	PRRT3-AS1|NR_046734.1	+	9947403,9948066,9948354,9954603	9947604,9948180,9948469,9954787	1.000000
gastrocnemius_medialis_female_adult_53_years	chr5	91313292	91313298	91313292	+	RAMPAGE_only	6	7	11	0.622548	3.095795	chr5	91313138	91313324	LINE|RTE-BovB|MamRTE1	+	chr5	91325142	91327014	STRG.9081.1	+	91325142,91326434	91325211,91327014	1.000000
gastrocnemius_medialis_female_adult_53_years	chr9	133126538	133126549	133126538	+	High_confidence	2	2	7	0.396167	2.521641	chr9	133126342	133126571	DNA|hAT-Charlie|MER102b	+	chr9	133126493	133130314	STRG.15426.1	+	133126493	133130314	1.000000
gastrocnemius_medialis_female_adult_53_years	chr3	40464227	40464256	40464227	+	RAMPAGE_only	16	18	36	2.037428	4.228972	chr3	40463973	40464259	SINE|Alu|AluSx	-	chr3	40457291	40468587	RPL14|ENST00000338970.10	+	40457291,40457889,40458641,40461406,40461607,40461938	40457363,40457991,40458736,40461506,40461661,40468587	1.000000
gastrocnemius_medialis_female_adult_53_years	chr16	87384807	87384829	87384828	-	RAMPAGE_only	8	9	26	1.471476	4.056021	chr16	87384638	87384881	SINE|Alu|AluJr	+	chr16	87326986	87383793	FBXO31|NM_024735.4	-	87326986,87333885,87335303,87336154,87342876,87343597,87347173,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87360366,87383793	0.692308
gastrocnemius_medialis_female_adult_53_years	chr10	113662680	113662758	113662690	-	RAMPAGE_only	21	21	112	6.338666	5.663997	chr10	113662586	113662659	LINE|L1|L1MA4A	-	chr10	113588715	113664046	NRAP|ENST00000369360.7	-	113588715,113589665,113590577,113592193,113595622,113597085,113597968,113604608,113605761,113606177,113608413,113610458,113612233,113614182,113614838,113615711,113617454,113620603,113621868,113623528,113624825,113626046,113628916,113629587,113631508,113631852,113633083,113634111,113640226,113641364,113645824,113646922,113650036,113650437,113651802,113652934,113654020,113657469,113662678,113663351,113663810	113589079,113589797,113590889,113592301,113595727,113597184,113598073,113604920,113605869,113606282,113608512,113610563,113612431,113614296,113614946,113615816,113617553,113620708,113622180,113623636,113624930,113626145,113629021,113629785,113631630,113631964,113633188,113634210,113640331,113641472,113645941,113647027,113650141,113650545,113651907,113653039,113654125,113657574,113662766,113663446,113664046	0.982143
gastrocnemius_medialis_female_adult_53_years	chr1	54200522	54200582	54200581	+	High_confidence	3	3	21	1.188500	3.108695	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.666667
gastrocnemius_medialis_female_adult_53_years	chr4	128570487	128570488	128570487	-	High_confidence	5	5	8	0.452762	2.521641	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.875000
gastrocnemius_medialis_female_adult_53_years	chr18	7946857	7946883	7946878	+	High_confidence	4	5	17	0.962119	3.616875	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.823529
gastrocnemius_medialis_female_adult_53_years	chr1	207340458	207340483	207340482	+	RAMPAGE_only	2	2	6	0.339571	2.584963	chr1	207340353	207340666	SINE|Alu|AluJr	-	chr1	207324657	207360502	CD55|ENST00000476590.1	+	207324657,207325621,207326751,207331107,207336692,207339396,207359545	207324750,207325721,207326837,207331296,207337409,207339417,207360502	0.666667
gastrocnemius_medialis_female_adult_53_years	chr9	68975836	68975843	68975842	-	High_confidence	9	9	16	0.905524	2.822580	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.687500
gastrocnemius_medialis_female_adult_53_years	chr8	27977120	27977126	27977125	-	High_confidence	27	34	49	2.773166	4.555197	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977114	STRG.13221.3	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977114	0.959184
gastrocnemius_medialis_female_adult_53_years	chr13	40350596	40350599	40350596	-	High_confidence	6	6	10	0.565952	3.121928	chr13	40350403	40350604	SINE|MIR|MIR3	+	chr13	40343958	40350396	STRG.20101.1	-	40343958,40350108	40344205,40350396	0.800000
gastrocnemius_medialis_female_adult_53_years	chr6	149896010	149896011	149896010	-	High_confidence	9	9	9	0.509357	2.503258	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.888889
gastrocnemius_medialis_female_adult_53_years	chr14	77076158	77076194	77076188	-	High_confidence	19	19	64	3.622095	5.389365	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77073899	77076321	STRG.21213.3	-	77073899,77076104	77074598,77076321	0.875000
gastrocnemius_medialis_female_adult_53_years	chr16	8842153	8842193	8842153	+	High_confidence	8	8	23	1.301690	3.368042	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.913043
gastrocnemius_medialis_female_adult_53_years	chr16	68267936	68267937	68267936	+	RAMPAGE_only	33	35	35	1.980833	4.400432	chr16	68267617	68268452	LTR|ERVL|MER21B	+	chr16	68266601	68294747	STRG.23385.2	+	68266601,68273817,68274690,68284879,68287745,68290395,68291208,68291557,68294704	68266721,68273904,68275249,68285013,68287871,68290540,68291332,68291661,68294747	0.971429
gastrocnemius_medialis_female_adult_53_years	chr12	112506673	112506735	112506707	+	RAMPAGE_only	14	14	32	1.811047	4.671781	chr12	112506599	112506946	LTR|ERVL-MaLR|MLT1H	-	chr12	112418913	112509913	PTPN11|ENST00000351677.6	+	112418913,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486474,112488442,112489023,112502143,112504694,112505824	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504796,112509913	0.968750
gastrocnemius_medialis_female_adult_53_years	chr12	110936582	110936585	110936584	+	High_confidence	318	550	663	37.522639	6.680768	chr12	110936431	110936780	LTR|ERVL-MaLR|THE1D	+	chr12	110936601	110937451	LINC01405|ENST00000331096.2	+	110936601,110937184	110936698,110937451	0.613876
gastrocnemius_medialis_female_adult_53_years	chr11	58578122	58578131	58578130	-	High_confidence	4	4	9	0.509357	2.750000	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.777778
gastrocnemius_medialis_female_adult_53_years	chr5	140700424	140700452	140700445	+	High_confidence	393	535	1464	82.855420	4.961424	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.978825
gastrocnemius_medialis_female_adult_53_years	chr10	95273881	95273882	95273881	-	High_confidence	14	14	14	0.792333	2.835238	chr10	95273549	95273887	LINE|RTE-X|L4_C_Mam	+	chr10	95263875	95273406	PDLIM1|ENST00000493949.1	-	95263875,95268777,95271632,95273036	95264063,95268862,95271784,95273406	0.785714
gastrocnemius_medialis_female_adult_53_years	chr1	51651126	51651127	51651126	+	RAMPAGE_only	21	21	23	1.301690	4.011365	chr1	51650929	51651267	LINE|L2|L2c	-	chr1	51617113	51776912	OSBPL9|ENST00000489990.5	+	51617113,51651990,51669433,51714002,51745535,51746709,51748368,51750144,51765821,51772069,51772604,51776832	51617221,51652041,51669512,51714079,51745631,51746757,51748398,51750195,51765981,51772182,51772723,51776912	0.826087
gastrocnemius_medialis_female_adult_53_years	chr10	103395858	103395862	103395861	-	High_confidence	3	3	8	0.452762	2.750000	chr10	103395615	103395992	LINE|RTE-X|L4_C_Mam	+	chr10	103389049	103396074	ATP5MD|ENST00000369811.5	-	103389049,103392190,103392370,103395745	103389166,103392283,103392466,103396074	1.000000
gastrocnemius_medialis_female_adult_53_years	chr7	51317421	51317435	51317421	-	High_confidence	8	8	15	0.848928	3.521641	chr7	51317281	51317460	DNA|hAT-Charlie|MER5A	+	chr7	51016211	51316818	COBL|NM_015198.3	-	51016211,51025108,51026545,51027711,51030811,51043382,51085165,51136157,51184101,51190849,51193378,51219740,51316592	51017568,51025372,51026665,51029591,51030909,51043692,51085304,51136331,51184199,51191078,51193589,51219944,51316818	0.666667
gastrocnemius_medialis_female_adult_53_years	chr1	228309292	228309293	228309292	+	RAMPAGE_only	10	11	15	0.848928	3.456565	chr1	228309335	228309443	LINE|CR1|L3	+	chr1	228294194	228361250	STRG.2716.8	+	228294194,228294779,228298453,228299258,228299881,228303674,228304302,228305122,228306371,228306900,228307258,228308110,228309098,228309483,228315846,228316708,228317463,228317894,228318883,228321343,228323327,228332859,228333198,228333582,228334511,228334814,228335079,228335790,228336199,228337003,228337243,228337943,228338289,228338852,228339944,228340505,228340723,228341094,228341436,228342118,228349889,228350840,228351320,228352950,228356150,228359596	228294415,228295043,228298717,228299522,228300145,228303938,228304566,228305386,228306638,228307167,228307531,228308383,228309295,228309559,228316119,228316984,228317751,228318173,228319254,228322214,228323606,228332938,228333323,228333780,228334544,228334913,228335298,228335851,228336270,228337126,228337383,228338144,228338372,228339026,228340101,228340622,228340888,228341253,228341614,228342232,228350057,228350943,228351450,228353062,228356193,228361250	0.933333
gastrocnemius_medialis_female_adult_53_years	chr17	29643374	29643378	29643377	-	RAMPAGE_only	12	14	30	1.697857	3.853236	chr17	29643278	29643403	LTR|ERVL-MaLR|MLT1L	+	chr17	29630799	29761390	STRG.24246.3	-	29630799,29635967,29643100,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29643384,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677741,29684684,29695523,29703062,29761390	0.966667
gastrocnemius_medialis_female_adult_53_years	chr4	3112860	3112864	3112863	+	High_confidence	54	60	97	5.489738	4.077631	chr4	3112259	3112985	LINE|L1|L1ME3A	-	chr4	3112863	3115445	HTT|ENST00000648150.1	+	3112863,3115303	3113052,3115445	0.752577
gastrocnemius_medialis_female_adult_53_years	chr3	179786902	179787340	179787244	+	RAMPAGE_only	22	25	348	19.695141	5.389057	chr3	179787243	179787417	SINE|MIR|MIR3	+	chr3	179653144	179789401	USP13|NM_003940.2	+	179653144,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653393,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179789401	0.997126
gastrocnemius_medialis_female_adult_53_years	chr17	16850011	16850030	16850019	-	High_confidence	3	3	12	0.679143	3.095795	chr17	16849983	16850107	LINE|L2|L2c	+	chr17	16848096	16850071	STRG.24044.1	-	16848096,16849200,16849669,16849920	16848245,16849421,16849784,16850071	0.583333
gastrocnemius_medialis_female_adult_53_years	chr11	64900883	64900929	64900928	-	RAMPAGE_only	5	5	16	0.905524	2.739572	chr11	64900759	64900881	SINE|MIR|MIRc	-	chr11	64894545	64913395	ATG2A|ENST00000418259.5	-	64894545,64895289,64896461,64896747,64897411,64897670,64897838,64898085,64898260,64898635,64900493,64900883,64901961,64902259,64902509,64903287,64903589,64905562,64905741,64906112,64906333,64906664,64907254,64907524,64907747,64908990,64909270,64909680,64910039,64910615,64910806,64911037,64911841,64912084,64912326,64913037,64913265	64895209,64895442,64896616,64896869,64897494,64897743,64897974,64898170,64898362,64898842,64900629,64901092,64902176,64902386,64902680,64903364,64903660,64905655,64905848,64906193,64906533,64906815,64907439,64907664,64907890,64909150,64909367,64909924,64910195,64910708,64910954,64911275,64911982,64912249,64912423,64913136,64913395	0.937500
gastrocnemius_medialis_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	2082	2139	5983	338.609273	7.217204	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.934815
gastrocnemius_medialis_female_adult_53_years	chrX	11351742	11351743	11351742	-	High_confidence	6	8	9	0.509357	3.000000	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11137543	11351670	STRG.29239.4	-	11137543,11142232,11143979,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11351385	11139530,11142313,11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11351670	0.777778
gastrocnemius_medialis_female_adult_53_years	chr6	107872852	107872881	107872852	-	RAMPAGE_only	1	1	8	0.452762	2.521641	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.875000
gastrocnemius_medialis_female_adult_53_years	chr11	73468826	73468847	73468846	-	High_confidence	4	4	16	0.905524	3.456565	chr11	73468774	73468895	SINE|MIR|MIR3	+	chr11	73400499	73468492	STRG.17801.3	-	73400499,73406040,73407512,73409486,73411393,73419873,73430689,73468404	73405963,73406744,73407643,73409661,73411536,73419999,73430770,73468492	0.937500
gastrocnemius_medialis_female_adult_53_years	chr10	102779854	102779864	102779854	+	RAMPAGE_only	9	9	16	0.905524	3.773557	chr10	102779736	102779930	LINE|L2|L2c	-	chr10	102776248	102816267	WBP1L|ENST00000369889.5	+	102776248,102797992,102809892,102812594	102776417,102798095,102810054,102816267	0.812500
gastrocnemius_medialis_female_adult_53_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	15	15	15	0.848928	3.456565	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888514	77943895	NEXN|NM_144573.3	+	77888514,77916054,77917565,77917959,77918124,77925187,77926413,77926715,77929315,77933281,77935822,77942022,77942460	77888759,77916133,77917757,77918038,77918273,77925229,77926611,77926892,77929504,77933479,77936044,77942208,77943895	1.000000
gastrocnemius_medialis_female_adult_53_years	chr20	3795750	3795789	3795788	+	High_confidence	10	10	53	2.999547	4.570230	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.981132
gastrocnemius_medialis_female_adult_53_years	chr11	65181205	65181223	65181222	+	High_confidence	7	7	15	0.848928	3.139572	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.933333
gastrocnemius_medialis_female_adult_53_years	chr9	120534000	120534044	120534000	-	High_confidence	17	17	89	5.036976	5.237285	chr9	120533823	120534313	LINE|L2|L2c	+	chr9	120527825	120534029	STRG.15195.13	-	120527825,120528743,120529977,120533916	120527925,120528797,120530140,120534029	0.741573
gastrocnemius_medialis_female_adult_53_years	chr19	28509014	28509035	28509034	+	High_confidence	8	8	14	0.792333	3.238901	chr19	28508985	28509155	LINE|L2|L2a	-	chr19	28509237	28518728	AC005616.1|ENST00000592931.1	+	28509237,28518300	28509388,28518728	0.928571
gastrocnemius_medialis_female_adult_53_years	chr8	99892036	99892057	99892056	-	RAMPAGE_only	194	194	325	18.393450	4.952110	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.993846
gastrocnemius_medialis_female_adult_53_years	chr1	201427175	201427176	201427175	-	RAMPAGE_only	82	82	82	4.640809	5.351097	chr1	201427119	201427295	SINE|MIR|MIR	-	chr1	201408863	201429866	TNNI1|ENST00000336092.8	-	201408863,201410325,201411356,201413031,201414517,201415212,201417115,201417782,201421672,201427174,201428837,201429698	201409250,201410435,201411533,201413121,201414649,201415254,201417119,201417812,201421726,201427293,201429274,201429866	1.000000
gastrocnemius_medialis_female_adult_53_years	chr16	15006418	15006474	15006473	+	RAMPAGE_only	4	5	17	0.962119	3.405639	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.588235
gastrocnemius_medialis_female_adult_53_years	chr1	231422708	231422749	231422748	-	High_confidence	64	67	259	14.658165	5.657304	chr1	231422714	231422871	SINE|MIR|MIRb	-	chr1	231363750	231422807	STRG.2810.1	-	231363750,231367568,231370561,231373979,231420997,231422218	231366475,231367636,231370698,231374099,231422098,231422807	0.992278
gastrocnemius_medialis_female_adult_53_years	chr9	129489090	129489128	129489125	+	High_confidence	5	6	16	0.905524	3.327820	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.687500
gastrocnemius_medialis_female_adult_53_years	chr5	91313195	91313208	91313207	-	High_confidence	7	7	13	0.735738	3.392747	chr5	91313138	91313324	LINE|RTE-BovB|MamRTE1	+	chr5	91310626	91313675	LUCAT1|ENST00000649539.1	-	91310626,91313077,91313637	91312495,91313229,91313675	1.000000
gastrocnemius_medialis_female_adult_53_years	chr4	76079040	76079056	76079055	+	RAMPAGE_only	3	5	11	0.622548	3.459432	chr4	76079093	76079282	SINE|MIR|MIR	+	chr4	76075250	76082278	ART3|ENST00000510423.1	+	76075250,76075880,76081823	76075277,76075958,76082278	0.909091
gastrocnemius_medialis_female_adult_53_years	chr12	93773407	93773412	93773411	+	RAMPAGE_only	5	5	9	0.509357	3.169925	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.888889
gastrocnemius_medialis_female_adult_53_years	chr2	45192663	45192666	45192665	-	High_confidence	6	9	10	0.565952	3.169925	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45187169	45192285	LINC01121|ENST00000454673.1	-	45187169,45192139	45189249,45192285	0.700000
gastrocnemius_medialis_female_adult_53_years	chr1	207331132	207331294	207331293	+	RAMPAGE_only	12	13	152	8.602475	5.204761	chr1	207331329	207331468	DNA|hAT-Charlie|Charlie4z	+	chr1	207326831	207373252	CD55|ENST00000635614.2	+	207326831,207331107,207336692,207337328,207339396,207367369,207370708,207372768	207326837,207331296,207336818,207337409,207339417,207367487,207370834,207373252	0.861842
gastrocnemius_medialis_female_adult_53_years	chr11	8776380	8776392	8776380	-	High_confidence	2	3	8	0.452762	2.807355	chr11	8776369	8776474	LINE|L2|L2b	-	chr11	8730980	8776679	ST5|ENST00000533016.1	-	8730980,8750620,8776191	8731209,8750725,8776679	0.750000
gastrocnemius_medialis_female_adult_53_years	chr12	643625	643636	643625	-	High_confidence	47	47	188	10.639904	5.291662	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.515957
gastrocnemius_medialis_female_adult_53_years	chr4	73144752	73144787	73144752	-	RAMPAGE_only	5	6	22	1.245095	3.141619	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.954545
gastrocnemius_medialis_female_adult_53_years	chr6	155315049	155315057	155315054	-	High_confidence	5	5	13	0.735738	3.392747	chr6	155314941	155315144	SINE|MIR|MIRb	+	chr6	155297080	155314493	TFB1M|ENST00000475849.1	-	155297080,155298476,155311187,155313137,155314295	155297104,155298585,155311339,155313244,155314493	0.846154
gastrocnemius_medialis_female_adult_53_years	chr4	119034271	119034301	119034271	+	RAMPAGE_only	2	3	9	0.509357	2.947703	chr4	119034263	119034446	SINE|tRNA|LFSINE_Vert	+	chr4	119027128	119037447	STRG.8020.7	+	119027128,119029844,119034610	119027438,119034573,119037447	1.000000
gastrocnemius_medialis_female_adult_53_years	chr7	101217578	101217595	101217578	-	High_confidence	4	4	8	0.452762	2.521641	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.875000
gastrocnemius_medialis_female_adult_53_years	chrX	54747130	54747221	54747130	+	High_confidence	32	32	118	6.678237	5.917275	chrX	54744135	54747484	LINE|L1|L1M1	-	chrX	54747140	54811644	STRG.29513.7	+	54747140,54748865,54749866,54786465,54788469,54806656,54809302,54809721,54810820,54811249,54811573	54747342,54748897,54749989,54786558,54788603,54806747,54809376,54810213,54811129,54811313,54811644	0.567797
gastrocnemius_medialis_female_adult_53_years	chr12	128819964	128820003	128820002	-	RAMPAGE_only	4	4	19	1.075309	3.614369	chr12	128819880	128820056	SINE|MIR|MIRb	+	chr12	128808805	128823522	SLC15A4|ENST00000376740.8	-	128808805,128809395,128809942,128814774,128823397	128808956,128809473,128810053,128815070,128823522	0.842105
gastrocnemius_medialis_female_adult_53_years	chr5	171400153	171400180	171400153	+	RAMPAGE_only	2	2	7	0.396167	2.807355	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171407492	171410884	NPM1|ENST00000524204.1	+	171407492,171410526	171407774,171410884	0.714286
gastrocnemius_medialis_female_adult_53_years	chr21	33909085	33909096	33909085	-	High_confidence	4	4	15	0.848928	3.182006	chr21	33908880	33909038	DNA|hAT-Charlie|MER5A1	-	chr21	33903455	33909095	ATP5PO|ENST00000418933.1	-	33903455,33903934,33907340,33909081	33903656,33904021,33907453,33909095	0.933333
gastrocnemius_medialis_female_adult_53_years	chr17	28352950	28353006	28352992	-	RAMPAGE_only	5	5	17	0.962119	3.702820	chr17	28352965	28353049	LINE|CR1|L3	+	chr17	28347660	28357463	POLDIP2|ENST00000618887.2	-	28347660,28349082,28350437,28350765,28351663,28352911,28353240,28353694,28354487,28355794,28357287	28348231,28349162,28350563,28350792,28351800,28353019,28353316,28353791,28354531,28355876,28357463	0.941176
gastrocnemius_medialis_female_adult_53_years	chr19	35039013	35039032	35039013	+	RAMPAGE_only	6	8	14	0.792333	3.664498	chr19	35038952	35039084	SINE|MIR|MIR3	-	chr19	35036898	35040449	SCN1B|ENST00000602150.2	+	35036898,35039796	35039706,35040449	0.928571
gastrocnemius_medialis_female_adult_53_years	chr7	123604042	123604110	123604109	+	RAMPAGE_only	7	8	31	1.754452	4.349192	chr7	123603369	123604299	LINE|CR1|L3	+	chr7	123601866	123637897	ASB15|NM_001290258.1	+	123601866,123604031,123608593,123614500,123616220,123616363,123617578,123624568,123627109,123628863,123629965,123636808	123601914,123604212,123608654,123614609,123616273,123616495,123617737,123624814,123627281,123629434,123630119,123637897	0.838710
gastrocnemius_medialis_female_adult_53_years	chr16	53495072	53495084	53495072	-	High_confidence	4	6	12	0.679143	2.663533	chr16	53495050	53495112	LINE|L2|L2	+	chr16	53491838	53494895	STRG.23216.5	-	53491838,53492692,53494137,53494338,53494516,53494838	53492522,53492753,53494245,53494437,53494605,53494895	0.916667
gastrocnemius_medialis_female_adult_53_years	chr19	45424286	45424376	45424313	-	High_confidence	11	11	63	3.565500	5.338158	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45407332	45424365	ERCC1|ENST00000300853.7	-	45407332,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423780	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424365	1.000000
gastrocnemius_medialis_female_adult_53_years	chr5	149180555	149180556	149180555	-	High_confidence	13	13	13	0.735738	3.238901	chr5	149180305	149180797	LTR|ERVL|LTR86A1	-	chr5	149174358	149180546	STRG.9654.1	-	149174358,149176943,149180432	149174722,149177079,149180546	0.923077
gastrocnemius_medialis_female_adult_53_years	chr2	241082960	241083001	241082970	+	RAMPAGE_only	4	4	13	0.735738	3.584963	chr2	241082926	241083495	LINE|L2|L2a	-	chr2	241063377	241091853	SNED1|ENST00000466618.1	+	241063377,241064011,241064843,241065298,241067763,241068910,241069919,241071575,241071795,241081676,241082276,241087391,241088364,241091637	241063700,241064125,241064957,241065595,241067947,241069023,241070201,241071720,241071878,241081793,241082364,241087475,241088402,241091853	0.846154
gastrocnemius_medialis_female_adult_53_years	chr17	55729152	55729173	55729152	+	RAMPAGE_only	7	7	16	0.905524	3.750000	chr17	55728873	55729441	LINE|L2|L2a	-	chr17	55750978	55777374	PCTP|ENST00000268896.9	+	55750978,55767334,55771105,55773723,55774791,55776034	55751244,55767452,55771185,55773895,55774859,55777374	1.000000
gastrocnemius_medialis_female_adult_53_years	chr9	33068823	33068839	33068823	-	RAMPAGE_only	3	3	14	0.792333	2.661226	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.928571
gastrocnemius_medialis_female_adult_53_years	chr10	72355126	72355146	72355145	-	High_confidence	21	21	39	2.207214	4.022530	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.948718
gastrocnemius_medialis_female_adult_53_years	chr20	20088461	20088598	20088597	-	High_confidence	41	47	186	10.526713	5.484954	chr20	20088284	20088660	LTR|ERVL-MaLR|THE1C	-	chr20	20072297	20089173	STRG.27520.6	-	20072297,20088366,20088851	20080997,20088435,20089173	0.569892
gastrocnemius_medialis_female_adult_53_years	chr18	8608041	8608048	8608041	+	RAMPAGE_only	4	4	9	0.509357	2.750000	chr18	8607829	8608179	SINE|Alu|AluJr	+	chr18	8609436	8639381	RAB12|ENST00000649141.1	+	8609436,8624937,8633188,8635532,8636252,8638148	8609953,8624998,8633327,8635622,8636357,8639381	0.777778
gastrocnemius_medialis_female_adult_53_years	chr1	179985165	179985187	179985165	+	RAMPAGE_only	7	7	16	0.905524	3.640224	chr1	179984981	179985507	LINE|L1|L1MB3	-	chr1	179986181	180048705	STRG.2277.2	+	179986181,179987242,179990506,179992061,179996552,180003173,180006453,180011928,180013846,180015848,180019948,180022697,180024418,180031319,180033861,180036925,180041137,180041661,180043055,180044050,180048535	179986254,179987286,179990621,179992221,179997175,180003287,180006567,180012075,180014505,180015970,180021009,180022848,180024582,180031494,180034082,180037089,180041248,180041802,180043192,180044173,180048705	0.937500
gastrocnemius_medialis_female_adult_53_years	chr3	141429505	141429539	141429538	+	RAMPAGE_only	36	39	59	3.339119	4.911724	chr3	141429492	141430039	LINE|L2|L2a	-	chr3	141431722	141442722	ZBTB38|ENST00000509813.1	+	141431722,141442388	141432243,141442722	0.644068
gastrocnemius_medialis_female_adult_53_years	chr11	14337110	14337157	14337156	-	High_confidence	5	5	23	1.301690	3.936180	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.913043
gastrocnemius_medialis_female_adult_53_years	chr2	227534913	227534981	227534980	+	RAMPAGE_only	3	3	21	1.188500	3.826875	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.904762
gastrocnemius_medialis_female_adult_53_years	chr5	151181681	151181746	151181714	-	RAMPAGE_only	3	4	18	1.018714	3.499228	chr5	151181594	151181690	DNA|hAT-Charlie|MER103C	-	chr5	151181051	151224093	CCDC69|NM_015621.2	-	151181051,151184343,151185421,151186022,151187385,151198996,151201581,151205399,151223922	151183614,151184441,151185541,151186124,151187459,151199084,151201688,151205475,151224093	0.888889
gastrocnemius_medialis_female_adult_53_years	chr15	83065041	83065060	83065059	-	RAMPAGE_only	5	5	9	0.509357	2.500000	chr15	83064887	83065012	LINE|L1|L1ME4a	-	chr15	83017960	83067151	BTBD1|ENST00000379403.2	-	83017960,83018706,83030135,83041727,83050072,83056388,83066750	83018225,83018853,83030328,83041925,83050178,83056545,83067151	0.777778
gastrocnemius_medialis_female_adult_53_years	chr6	17283621	17283626	17283621	+	High_confidence	5	5	9	0.509357	2.947703	chr6	17283420	17283716	SINE|Alu|AluSq2	-	chr6	17283043	17292217	RBM24|ENST00000504055.1	+	17283043,17284656,17285052,17291755	17283090,17284711,17285165,17292217	1.000000
gastrocnemius_medialis_female_adult_53_years	chr5	139364647	139364731	139364719	+	RAMPAGE_only	4	4	19	1.075309	3.530493	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.947368
gastrocnemius_medialis_female_adult_53_years	chr2	177234004	177234052	177234004	-	RAMPAGE_only	2	2	15	0.848928	3.373557	chr2	177233751	177233962	SINE|MIR|MIRc	-	chr2	177232276	177263454	NFE2L2|ENST00000423513.5	-	177232276,177234004,177263402	177233339,177234271,177263454	0.666667
gastrocnemius_medialis_female_adult_53_years	chr4	74449092	74449146	74449145	+	RAMPAGE_only	4	4	11	0.622548	2.845351	chr4	74449070	74449168	LINE|L1|L1MEf	+	chr4	74445133	74455009	AREG|ENST00000395748.7	+	74445133,74446533,74449046,74450379,74452543,74454758	74445406,74446782,74449248,74450532,74452655,74455009	1.000000
gastrocnemius_medialis_female_adult_53_years	chrX	155719045	155719057	155719045	-	RAMPAGE_only	17	17	26	1.471476	4.392747	chrX	155718901	155722240	LINE|L1|L1M1	+	chrX	155489010	155612961	TMLHE|NM_018196.3	-	155489010,155492356,155506897,155511672,155513985,155524455,155545095,155612791	155491666,155492495,155507134,155511792,155514265,155524632,155545277,155612961	0.692308
gastrocnemius_medialis_female_adult_53_years	chr7	64999443	64999444	64999443	-	High_confidence	38	39	53	2.999547	4.966326	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64974451	64999786	STRG.12054.1	-	64974451,64981386,64981983,64989946,64999120	64979536,64981482,64982116,64993414,64999786	0.905660
gastrocnemius_medialis_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	248	250	250	14.148808	5.318908	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.960000
gastrocnemius_medialis_female_adult_53_years	chr19	38448673	38448796	38448774	+	RAMPAGE_only	21	21	151	8.545880	5.952628	chr19	38448818	38448934	SINE|Alu|AluJb	+	chr19	38433829	38587420	RYR1|ENST00000359596.7	+	38433829,38440744,38442348,38443557,38443717,38444148,38444583,38446471,38446693,38448354,38448648,38451763,38452818,38455234,38455450,38455632,38457496,38458050,38459145,38460374,38463422,38463746,38464638,38466090,38467609,38468965,38469304,38473376,38475317,38477709,38478434,38483026,38483289,38485589,38489176,38490075,38490620,38492489,38494351,38496214,38496408,38496859,38499107,38499634,38499907,38500605,38500820,38502506,38502879,38504219,38504747,38505002,38505308,38505805,38506302,38506470,38506828,38507711,38510497,38510659,38511560,38512071,38512244,38515025,38516086,38517358,38519213,38523027,38523216,38523914,38525331,38526992,38527646,38528305,38528598,38528950,38532489,38532670,38534719,38535140,38535315,38535996,38536749,38537879,38543346,38543531,38543770,38546444,38548232,38561112,38564958,38566910,38567772,38570606,38572018,38573176,38575918,38577917,38578143,38579981,38580369,38584942,38585937,38586090,38586524,38587324	38433874,38440864,38442453,38443632,38443796,38444261,38444677,38446565,38446768,38448511,38448813,38451885,38453014,38455370,38455546,38455751,38457630,38458292,38459338,38460591,38463527,38463850,38464722,38466398,38467812,38469140,38469513,38473771,38475450,38477870,38478600,38483113,38483516,38486202,38489443,38490276,38490732,38492636,38494625,38496329,38496541,38496954,38499243,38499821,38500016,38500726,38500990,38502727,38502970,38504360,38504911,38505081,38505398,38505946,38506377,38506546,38506952,38507827,38510565,38510781,38511610,38512132,38512483,38515107,38516217,38517691,38519454,38523115,38523309,38523929,38525502,38527052,38527784,38528418,38528695,38529057,38532541,38532736,38534819,38535220,38535392,38536070,38536767,38537960,38543435,38543660,38543875,38546526,38548420,38561454,38565771,38566987,38567917,38570693,38572270,38573307,38575961,38578048,38578204,38580128,38580504,38585099,38586002,38586191,38586576,38587420	0.993377
gastrocnemius_medialis_female_adult_53_years	chr9	129488849	129488877	129488856	+	High_confidence	14	14	27	1.528071	2.852061	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.925926
gastrocnemius_medialis_female_adult_53_years	chr6	130978732	130978739	130978738	-	High_confidence	5	6	10	0.565952	2.725481	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.700000
gastrocnemius_medialis_female_adult_53_years	chr16	87860517	87860528	87860527	-	High_confidence	31	36	55	3.112738	4.647153	chr16	87860400	87860678	LTR|ERV1|MER4B	+	chr16	87830022	87860715	STRG.23604.1	-	87830022,87834413,87836497,87837844,87838713,87839701,87840428,87841049,87851723,87855590,87860436	87833025,87834591,87836647,87837941,87838817,87839825,87840473,87841155,87851849,87858699,87860715	0.927273
gastrocnemius_medialis_female_adult_53_years	chr19	58306115	58306147	58306115	+	High_confidence	6	8	19	1.075309	3.005315	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.789474
gastrocnemius_medialis_female_adult_53_years	chr16	30373015	30373016	30373015	+	High_confidence	5	7	7	0.396167	2.521641	chr16	30372675	30373134	LINE|L2|L2b	+	chr16	30372317	30377991	MYLPF|NM_001324458.1	+	30372317,30372877,30374821,30375819,30376144,30376422,30376619,30377653,30377795	30372360,30373016,30374860,30375912,30376220,30376527,30376698,30377702,30377991	1.000000
gastrocnemius_medialis_female_adult_53_years	chr2	182928782	182928789	182928788	-	RAMPAGE_only	4	4	15	0.848928	3.039149	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.666667
gastrocnemius_medialis_female_adult_53_years	chr2	36584394	36584395	36584394	-	High_confidence	21	21	25	1.414881	2.901364	chr2	36584029	36584427	LTR|ERVL|LTR33	+	chr2	36555682	36584058	FEZ2|ENST00000464964.1	-	36555682,36558437,36578596,36581289,36583352,36584029	36555748,36558513,36578865,36581431,36583469,36584058	0.960000
gastrocnemius_medialis_female_adult_53_years	chr12	105353485	105353530	105353510	+	High_confidence	169	170	699	39.560067	6.613412	chr12	105353069	105353608	LTR|ERVL-MaLR|MLT1K	-	chr12	105353508	105371203	C12orf75|ENST00000548336.1	+	105353508,105365806,105366616,105367471,105370633	105353586,105365842,105366696,105367509,105371203	0.978541
gastrocnemius_medialis_female_adult_53_years	chr2	36594495	36594539	36594495	-	High_confidence	22	28	71	4.018261	4.513102	chr2	36594337	36594691	LTR|ERVL-MaLR|THE1A	-	chr2	36552257	36594566	FEZ2|ENST00000413938.5	-	36552257,36555682,36558437,36578596,36581289,36581504,36583352,36590902,36594413	36553179,36555748,36558513,36578865,36581431,36581590,36583469,36591011,36594566	0.985915
gastrocnemius_medialis_female_adult_53_years	chr1	110019624	110019625	110019624	+	RAMPAGE_only	5	5	8	0.452762	2.500000	chr1	110019670	110019874	SINE|MIR|MIRb	+	chr1	110017494	110022045	AHCYL1|ENST00000481423.1	+	110017494,110017945,110019547,110020730,110021673	110017583,110018016,110019626,110020851,110022045	1.000000
gastrocnemius_medialis_female_adult_53_years	chr17	48050381	48050398	48050381	+	RAMPAGE_only	16	16	45	2.546785	4.205757	chr17	48050196	48050491	SINE|Alu|AluSx1	+	chr17	48049131	48051129	NFE2L1|ENST00000581441.1	+	48049131,48050606	48049160,48051129	0.933333
gastrocnemius_medialis_female_adult_53_years	chrX	53546444	53546490	53546454	-	RAMPAGE_only	3	4	18	1.018714	3.852169	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.833333
gastrocnemius_medialis_female_adult_53_years	chr20	58446482	58446508	58446484	+	RAMPAGE_only	2	3	8	0.452762	2.807355	chr20	58446446	58446521	DNA|hAT-Charlie|MER58A	-	chr20	58389121	58451101	VAPB|ENST00000475243.5	+	58389121,58418210,58434601,58438944,58440906,58444076	58389517,58418363,58434705,58439025,58441083,58451101	0.875000
gastrocnemius_medialis_female_adult_53_years	chr17	59651206	59651236	59651214	+	RAMPAGE_only	4	4	18	1.018714	3.572469	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.777778
gastrocnemius_medialis_female_adult_53_years	chr16	2757780	2757802	2757801	+	High_confidence	2	2	7	0.396167	2.584963	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.714286
gastrocnemius_medialis_female_adult_53_years	chr21	28048446	28048447	28048446	+	High_confidence	29	29	32	1.811047	3.757049	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.968750
gastrocnemius_medialis_female_adult_53_years	chr19	49560363	49560420	49560363	-	High_confidence	37	39	97	5.489738	3.615577	chr19	49560291	49560459	SINE|MIR|MIR	+	chr19	49557876	49560397	NOSIP|ENST00000598839.1	-	49557876,49558061,49558896,49559933	49557945,49558199,49558978,49560397	0.979381
gastrocnemius_medialis_female_adult_53_years	chr1	100268205	100268286	100268280	+	RAMPAGE_only	11	11	66	3.735285	4.270262	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.969697
gastrocnemius_medialis_female_adult_53_years	chr12	16353884	16353885	16353884	+	High_confidence	6	6	7	0.396167	2.584963	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.571429
gastrocnemius_medialis_female_adult_53_years	chr8	143281669	143281687	143281686	-	High_confidence	30	31	84	4.753999	5.037089	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.535714
gastrocnemius_medialis_female_adult_53_years	chr20	38985949	38985969	38985949	+	RAMPAGE_only	2	2	9	0.509357	2.500000	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.888889
gastrocnemius_medialis_female_adult_53_years	chr8	134572652	134572677	134572676	-	High_confidence	6	6	22	1.245095	3.788755	chr8	134572592	134572743	DNA|TcMar-Mariner|MARNA	-	chr8	134478392	134572647	STRG.13919.3	-	134478392,134509618,134512474,134520882,134532833,134565332,134572545	134478721,134509749,134512601,134521001,134532972,134565421,134572647	0.954545
gastrocnemius_medialis_female_adult_53_years	chr4	119145704	119145711	119145710	+	RAMPAGE_only	4	4	9	0.509357	3.169925	chr4	119145674	119147458	LINE|L1|L1MD1	-	chr4	119135783	119187789	MYOZ2|ENST00000307128.5	+	119135783,119136511,119150871,119158021,119164210,119185965	119135982,119136601,119151041,119158151,119164394,119187789	1.000000
gastrocnemius_medialis_female_adult_53_years	chr2	187529458	187529486	187529458	-	RAMPAGE_only	7	7	16	0.905524	3.155639	chr2	187529293	187529670	LTR|ERVL-MaLR|MLT1B	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.875000
gastrocnemius_medialis_female_adult_53_years	chr2	29114109	29114174	29114149	+	High_confidence	75	75	500	28.297616	6.059876	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.976000
gastrocnemius_medialis_female_adult_53_years	chr6	33748451	33748485	33748484	-	High_confidence	3	3	12	0.679143	3.459432	chr6	33748484	33748667	SINE|Alu|AluJb	+	chr6	33722396	33748912	STRG.10425.4	-	33722396,33725440,33726730,33728086,33735277,33739132,33748711	33723187,33725616,33726906,33728300,33735655,33739261,33748912	0.916667
gastrocnemius_medialis_female_adult_53_years	chr12	689822	689823	689822	+	High_confidence	23	26	33	1.867643	3.574699	chr12	689484	689961	LTR|ERV1|MER51E	+	chr12	689814	728261	STRG.18435.1	+	689814,702948,710974,728009	690037,702998,711112,728261	0.787879
gastrocnemius_medialis_female_adult_53_years	chr2	201122589	201122663	201122589	+	High_confidence	623	696	1251	70.800635	7.042226	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201122476	201176687	STRG.4700.2	+	201122476,201129728,201133028,201135971,201140356,201145377,201149002,201149753,201160431,201163834	201122747,201130146,201133134,201136107,201140439,201145432,201149052,201149835,201160942,201176687	0.989608
gastrocnemius_medialis_female_adult_53_years	chr11	114070902	114070903	114070902	+	RAMPAGE_only	184	184	220	12.450951	6.442233	chr11	114070912	114071059	SINE|MIR|MIRb	+	chr11	114064411	114247344	ZBTB16|ENST00000539918.5	+	114064411,114121817,114156336,114186951,114242166,114247197	114064568,114121914,114156434,114187038,114242337,114247344	0.509091
gastrocnemius_medialis_female_adult_53_years	chr5	1810937	1810939	1810938	+	RAMPAGE_only	5	7	9	0.509357	2.750000	chr5	1810886	1811314	DNA|TcMar-Tigger|Tigger2a	+	chr5	1801414	1814699	NDUFS6|ENST00000469176.1	+	1801414,1802320,1814338	1801549,1802374,1814699	0.555556
gastrocnemius_medialis_female_adult_53_years	chr12	15001810	15001826	15001825	+	High_confidence	6	6	11	0.622548	2.663533	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	1.000000
gastrocnemius_medialis_female_adult_53_years	chr6	166561818	166561819	166561818	-	RAMPAGE_only	5	7	7	0.396167	2.521641	chr6	166561716	166561770	DNA|hAT-Charlie|MER30	-	chr6	166409363	166544690	RPS6KA2|NM_001318938.1	-	166409363,166413793,166418224,166419881,166423255,166430452,166432400,166448723,166451102,166459448,166469840,166488832,166490670,166498507,166500886,166504505,166508202,166510276,166531231,166538667,166544599	166412887,166413931,166418342,166419958,166423417,166430611,166432490,166448849,166451233,166459551,166469905,166488921,166490741,166498650,166500924,166504612,166508282,166510357,166531313,166538784,166544690	1.000000
gastrocnemius_medialis_female_adult_53_years	chr8	11864410	11864445	11864410	-	RAMPAGE_only	5	5	14	0.792333	3.521641	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	1.000000
gastrocnemius_medialis_female_adult_53_years	chrX	150777449	150777484	150777449	-	RAMPAGE_only	9	9	18	1.018714	3.683542	chrX	150776742	150777409	LTR|ERV1|MER4A	-	chrX	150768976	150814864	CD99L2|ENST00000634795.1	-	150768976,150770303,150771804,150776173,150777443,150793690,150795205,150795417,150814861	150769101,150770369,150771822,150776293,150777482,150793756,150795289,150795486,150814864	0.611111
gastrocnemius_medialis_female_adult_53_years	chr12	102351221	102351257	102351221	-	High_confidence	12	12	37	2.094024	4.194386	chr12	102350797	102351351	LTR|ERVL|MLT2A2	-	chr12	102326717	102351509	STRG.19482.1	-	102326717,102350886	102327271,102351509	0.810811
gastrocnemius_medialis_female_adult_53_years	chr7	80524846	80524847	80524846	+	RAMPAGE_only	8	8	9	0.509357	3.000000	chr7	80524761	80524908	LTR|ERV1|LTR38B	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.777778
gastrocnemius_medialis_female_adult_53_years	chr8	116648830	116648865	116648841	-	RAMPAGE_only	3	3	10	0.565952	3.121928	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
gastrocnemius_medialis_female_adult_53_years	chr2	36584153	36584317	36584316	-	High_confidence	89	89	618	34.975853	4.666158	chr2	36584029	36584427	LTR|ERVL|LTR33	+	chr2	36555682	36584058	FEZ2|ENST00000464964.1	-	36555682,36558437,36578596,36581289,36583352,36584029	36555748,36558513,36578865,36581431,36583469,36584058	0.985437
gastrocnemius_medialis_female_adult_53_years	chr8	144106344	144106423	144106422	+	High_confidence	10	11	48	2.716571	4.560383	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107611	STRG.14057.6	+	144106600,144106834,144107060	144106674,144106963,144107611	0.875000
gastrocnemius_medialis_female_adult_53_years	chr8	18063185	18063207	18063197	-	High_confidence	3	3	9	0.509357	3.000000	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.888889
gastrocnemius_medialis_female_adult_53_years	chr10	77498953	77498961	77498960	-	High_confidence	9	15	21	1.188500	3.681881	chr10	77498859	77499086	SINE|MIR|MIR	+	chr10	77183472	77498970	KCNMA1|ENST00000640311.1	-	77183472,77184822,77251194,77403861,77493797,77498583	77183532,77184916,77251256,77404023,77493929,77498970	0.523810
gastrocnemius_medialis_female_adult_53_years	chr15	50766314	50766334	50766314	-	High_confidence	9	9	22	1.245095	4.106603	chr15	50766223	50766525	SINE|Alu|AluSc8	+	chr15	50702265	50765808	SPPL2A|ENST00000261854.9	-	50702265,50719939,50722123,50725220,50726320,50730964,50732602,50736100,50736643,50739679,50747494,50748112,50748687,50749635,50765467	50707874,50720100,50722201,50725323,50726377,50731039,50732684,50736202,50736740,50739828,50747628,50748202,50748870,50749746,50765808	0.500000
gastrocnemius_medialis_female_adult_53_years	chr6	43777284	43777386	43777343	+	High_confidence	33	33	135	7.640356	5.574622	chr6	43777305	43777366	LINE|CR1|L3b	+	chr6	43777719	43786439	VEGFA|ENST00000497139.5	+	43777719,43778888,43784540	43778536,43778918,43786439	0.888889
gastrocnemius_medialis_female_adult_53_years	chr6	43013392	43013393	43013392	-	High_confidence	7	7	7	0.396167	2.807355	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
gastrocnemius_medialis_female_adult_53_years	chr5	32403116	32403169	32403116	-	RAMPAGE_only	10	13	48	2.716571	4.528465	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.958333
gastrocnemius_medialis_female_adult_53_years	chr3	152396035	152396107	152396038	+	RAMPAGE_only	84	85	487	27.561878	4.847551	chr3	152395923	152396404	DNA|hAT-Charlie|MER1A	+	chr3	152300197	152459302	MBNL1|ENST00000464596.5	+	152300197,152414940,152432716,152445281,152447619,152459270	152300367,152415111,152432920,152445539,152447773,152459302	0.971253
gastrocnemius_medialis_female_adult_53_years	chr7	113910066	113910067	113910066	-	High_confidence	12	12	18	1.018714	3.337175	chr7	113909901	113910254	LTR|ERVL-MaLR|THE1B	-	chr7	113879770	113910057	STRG.12569.4	-	113879770,113882038,113882261,113909984	113880125,113882163,113882320,113910057	0.722222
gastrocnemius_medialis_female_adult_53_years	chr8	144063549	144063575	144063549	-	High_confidence	2	2	8	0.452762	2.500000	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144058886	144063965	OPLAH|ENST00000567871.2	-	144058886,144058979,144059598,144059861,144063699	144058896,144059079,144059790,144060085,144063965	1.000000
gastrocnemius_medialis_female_adult_53_years	chr11	74070871	74070874	74070873	-	High_confidence	14	18	22	1.245095	3.108695	chr11	74070756	74071175	LINE|L2|L2c	+	chr11	74049518	74070869	C2CD3|ENST00000542484.1	-	74049518,74054606,74057405,74070505	74049542,74054671,74057544,74070869	0.727273
gastrocnemius_medialis_female_adult_53_years	chr12	124355447	124355483	124355447	-	RAMPAGE_only	2	3	11	0.622548	2.521928	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124340006	124388824	STRG.20302.6	-	124340006,124340304,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124388684	124340127,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362294,124363799,124372610,124374463,124378384,124385887,124388824	0.909091
gastrocnemius_medialis_female_adult_53_years	chrX	7147267	7147288	7147287	+	High_confidence	40	40	90	5.093571	5.473534	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147276	7354786	STRG.29225.2	+	7147276,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7148083,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354786	0.977778
gastrocnemius_medialis_female_adult_53_years	chr3	9973634	9973707	9973634	-	RAMPAGE_only	8	9	52	2.942952	4.757756	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	1.000000
gastrocnemius_medialis_female_adult_53_years	chr11	77175302	77175303	77175302	+	High_confidence	6	6	8	0.452762	3.000000	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
gastrocnemius_medialis_female_adult_53_years	chr8	80485592	80485596	80485592	+	High_confidence	5	5	12	0.679143	3.418296	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.750000
gastrocnemius_medialis_female_adult_53_years	chr16	86727346	86727347	86727346	+	High_confidence	24	24	34	1.924238	4.687500	chr16	86727319	86727414	SINE|Alu|AluSx3	+	chr16	86727346	86738593	LINC02188|ENST00000649094.1	+	86727346,86727867,86734825,86737409	86727536,86727967,86734909,86738593	0.852941
gastrocnemius_medialis_female_adult_53_years	chrX	53220846	53220889	53220857	-	RAMPAGE_only	5	7	23	1.301690	3.788755	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	0.956522
gastrocnemius_medialis_female_adult_53_years	chr3	15679313	15679338	15679313	-	RAMPAGE_only	3	4	8	0.452762	2.750000	chr3	15678993	15679268	SINE|Alu|AluJr	-	chr3	15676595	15677606	ANKRD28|ENST00000479043.1	-	15676595,15677479	15677056,15677606	0.500000
gastrocnemius_medialis_female_adult_53_years	chr4	99718171	99718172	99718171	-	RAMPAGE_only	28	31	36	2.037428	4.513646	chr4	99718009	99718367	LTR|ERVL-MaLR|THE1B	-	chr4	99695180	99696850	STRG.7868.1	-	99695180,99696780	99696050,99696850	0.527778
gastrocnemius_medialis_female_adult_53_years	chrX	2502817	2502833	2502818	-	High_confidence	167	277	537	30.391640	6.589896	chrX	2502799	2503215	LTR|ERV1|MER41D	+	chrX	2489904	2502914	STRG.29207.10	-	2489904,2502760	2490772,2502914	0.931099
gastrocnemius_medialis_female_adult_53_years	chr3	15207317	15207323	15207317	+	RAMPAGE_only	13	13	24	1.358286	3.641250	chr3	15207029	15208174	DNA|TcMar-Tigger|Tigger3b	-	chr3	15206242	15252918	CAPN7|ENST00000253693.6	+	15206242,15212103,15217424,15218472,15220780,15223474,15227838,15228973,15230441,15232518,15233866,15235024,15240472,15240753,15241452,15242177,15245525,15246731,15247326,15250930,15251115	15206597,15212212,15217582,15218540,15220981,15223561,15227965,15229059,15230535,15232665,15233973,15235145,15240617,15240853,15241588,15242253,15245671,15246794,15247457,15251023,15252918	0.916667
gastrocnemius_medialis_female_adult_53_years	chr4	139509363	139509493	139509492	-	RAMPAGE_only	7	7	66	3.735285	4.296907	chr4	139509339	139509538	DNA|hAT-Charlie|Charlie30a	-	chr4	139506037	139556208	STRG.8114.2	-	139506037,139517884,139520276,139523353,139529030,139533164,139546919,139556097	139511843,139518042,139520394,139523435,139529220,139533366,139547049,139556208	0.984848
gastrocnemius_medialis_female_adult_53_years	chr1	54852107	54852108	54852107	-	RAMPAGE_only	10	10	13	0.735738	3.251629	chr1	54851851	54852077	SINE|MIR|MIRb	-	chr1	54849663	54886890	DHCR24|ENST00000648712.1	-	54849663,54853433,54854036,54865302,54871349,54875092,54875941,54879059,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54879319,54883773,54886890	0.923077
gastrocnemius_medialis_female_adult_53_years	chr16	2759961	2759996	2759995	+	High_confidence	6	6	16	0.905524	3.327820	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	1.000000
gastrocnemius_medialis_female_adult_53_years	chr6	118651542	118651593	118651563	-	High_confidence	73	73	347	19.638545	6.844404	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.988473
gastrocnemius_medialis_female_adult_53_years	chr2	11201309	11201336	11201335	-	RAMPAGE_only	8	9	35	1.980833	4.686147	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11179760	11221340	STRG.3017.2	-	11179760,11184665,11192147,11192450,11193778,11194255,11194954,11196692,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197	11183440,11184769,11192361,11192712,11193857,11194344,11195025,11196863,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221340	1.000000
gastrocnemius_medialis_female_adult_53_years	chr19	44627095	44627096	44627095	+	RAMPAGE_only	10	10	14	0.792333	3.807355	chr19	44626936	44627280	LINE|L2|L2b	-	chr19	44613629	44636781	IGSF23|ENST00000402988.5	+	44613629,44623706,44627419,44635400,44636418	44613770,44623972,44627573,44635465,44636781	0.928571
gastrocnemius_medialis_female_adult_53_years	chr9	133126427	133126514	133126483	+	High_confidence	26	26	55	3.112738	4.949151	chr9	133126342	133126571	DNA|hAT-Charlie|MER102b	+	chr9	133126493	133130314	STRG.15426.1	+	133126493	133130314	0.981818
gastrocnemius_medialis_female_adult_53_years	chr19	18013263	18013283	18013282	+	RAMPAGE_only	3	3	9	0.509357	2.750000	chr19	18013258	18013441	LINE|L2|L2c	-	chr19	18008169	18014100	ARRDC2|ENST00000593460.1	+	18008169,18012912	18010729,18014100	0.777778
gastrocnemius_medialis_female_adult_53_years	chr7	82038167	82038189	82038176	-	High_confidence	3	3	9	0.509357	3.169925	chr7	82038103	82038137	LINE|CR1|X8_LINE	-	chr7	82012042	82038235	CACNA2D1|ENST00000492734.1	-	82012042,82013460,82014400,82032796,82038076	82012243,82013510,82014479,82032901,82038235	0.888889
gastrocnemius_medialis_female_adult_53_years	chr12	102351480	102351518	102351517	-	High_confidence	8	11	21	1.188500	3.892407	chr12	102351438	102351949	LTR|ERVL|MLT2B3	+	chr12	102326717	102351509	STRG.19482.1	-	102326717,102350886	102327271,102351509	0.809524
gastrocnemius_medialis_female_adult_53_years	chr4	184410177	184410178	184410177	-	RAMPAGE_only	27	29	32	1.811047	4.523231	chr4	184410124	184410341	SINE|MIR|MIR	+	chr4	184389021	184418590	IRF2|ENST00000505067.5	-	184389021,184390702,184398914,184407178,184408157,184418166,184418531	184389066,184390749,184399079,184407283,184408275,184418213,184418590	0.531250
gastrocnemius_medialis_female_adult_53_years	chr2	27978251	27978252	27978251	+	High_confidence	12	13	14	0.792333	3.324863	chr2	27978041	27978454	LTR|ERVL-MaLR|MSTB	+	chr2	27978262	28338901	STRG.3200.6	+	27978262,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28327273,28338449	27978374,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28327447,28338901	1.000000
gastrocnemius_medialis_female_adult_53_years	chr1	89128427	89128444	89128427	+	RAMPAGE_only	4	5	8	0.452762	2.521641	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89148596	89149477	STRG.1235.1	+	89148596,89149331	89148680,89149477	0.750000
gastrocnemius_medialis_female_adult_53_years	chr1	153967486	153967536	153967535	+	High_confidence	8	8	32	1.811047	4.373551	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.843750
gastrocnemius_medialis_female_adult_53_years	chr11	114161391	114161394	114161391	+	High_confidence	89	98	236	13.356475	7.012067	chr11	114161357	114161537	LINE|L2|L2b	-	chr11	114160802	114247296	STRG.18227.6	+	114160802,114186951,114242166,114247197	114161765,114187038,114242337,114247296	0.644068
gastrocnemius_medialis_female_adult_53_years	chrX	48683361	48683363	48683361	+	High_confidence	6	10	10	0.565952	3.121928	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
gastrocnemius_medialis_female_adult_53_years	chr5	137316021	137316025	137316021	-	High_confidence	9	9	17	0.962119	3.734522	chr5	137316016	137316339	LTR|ERVL-MaLR|MLT1A0	-	chr5	137112491	137316129	STRG.9464.6	-	137112491,137140579,137267009,137315513	137112561,137140694,137267055,137316129	1.000000
gastrocnemius_medialis_female_adult_53_years	chr3	179740045	179740090	179740045	+	RAMPAGE_only	6	6	16	0.905524	3.875000	chr3	179740053	179740112	SINE|MIR|MIR	+	chr3	179721563	179761151	USP13|ENST00000497155.1	+	179721563,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179761111	179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179761151	0.875000
gastrocnemius_medialis_female_adult_53_years	chr1	246611082	246611088	246611087	+	RAMPAGE_only	11	11	29	1.641262	4.208966	chr1	246610312	246611413	LINE|L1|L1MB4	-	chr1	246591487	246668584	STRG.2891.2	+	246591487,246618257,246621428,246631893,246633923,246634472,246641748,246641940,246647138,246660198,246665699	246591941,246618401,246621634,246631924,246634010,246634587,246641770,246642037,246648037,246660334,246668584	0.965517
gastrocnemius_medialis_female_adult_53_years	chr1	145935034	145935136	145935135	-	RAMPAGE_only	8	8	38	2.150619	4.326466	chr1	145934884	145935183	SINE|Alu|AluSx	+	chr1	145933422	145958001	LIX1L|ENST00000604000.3	-	145933422,145936907,145937603,145942712,145947618,145957635	145936552,145936985,145937699,145942853,145947782,145958001	0.947368
gastrocnemius_medialis_female_adult_53_years	chr2	36584049	36584055	36584049	-	High_confidence	115	122	247	13.979022	4.462671	chr2	36584029	36584427	LTR|ERVL|LTR33	+	chr2	36555682	36584058	FEZ2|ENST00000464964.1	-	36555682,36558437,36578596,36581289,36583352,36584029	36555748,36558513,36578865,36581431,36583469,36584058	0.967611
gastrocnemius_medialis_female_adult_53_years	chr9	72353415	72353743	72353424	-	RAMPAGE_only	322	331	944	53.425899	4.594944	chr9	72353393	72353650	SINE|Alu|AluSq2	+	chr9	72351424	72364592	ZFAND5|NM_001278244.1	-	72351424,72356930,72359417,72360109,72360627,72364461	72356101,72357056,72359521,72360221,72360787,72364592	0.998941
gastrocnemius_medialis_female_adult_53_years	chr8	11795986	11796010	11795986	+	High_confidence	15	15	34	1.924238	4.572469	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795580	11830275	STRG.13069.6	+	11795580,11802257,11802758,11808793,11809666,11821749,11826023,11830243	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830275	0.911765
gastrocnemius_medialis_female_adult_53_years	chr12	112506769	112506770	112506769	+	RAMPAGE_only	9	9	14	0.792333	2.950212	chr12	112506599	112506946	LTR|ERVL-MaLR|MLT1H	-	chr12	112418913	112509913	PTPN11|ENST00000351677.6	+	112418913,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486474,112488442,112489023,112502143,112504694,112505824	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504796,112509913	1.000000
gastrocnemius_medialis_female_adult_53_years	chr9	121286591	121286609	121286591	+	High_confidence	4	4	14	0.792333	3.700440	chr9	121286415	121286709	LINE|L2|L2b	+	chr9	121286591	121332656	GSN|ENST00000545652.6	+	121286591,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286761,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332656	0.928571
gastrocnemius_medialis_female_adult_53_years	chr5	95844109	95844135	95844109	+	High_confidence	23	23	107	6.055690	5.904662	chr5	95844156	95844245	LTR|ERVL-MaLR|MLT1K	+	chr5	95843196	95860133	STRG.9111.12	+	95843196,95848840,95852791,95856877,95858803	95848142,95852714,95852926,95856981,95860133	0.962617
gastrocnemius_medialis_female_adult_53_years	chrX	38612597	38612636	38612622	+	RAMPAGE_only	127	151	447	25.298069	5.420141	chrX	38612500	38614189	LINE|L1|HAL1	-	chrX	38570682	38675816	TSPAN7|ENST00000488893.5	+	38570682,38666120,38671375,38674220,38675704	38570946,38666309,38671450,38674316,38675816	0.847875
gastrocnemius_medialis_female_adult_53_years	chr1	25820200	25820239	25820215	+	High_confidence	6	6	19	1.075309	3.366091	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820231	25829658	MTFR1L|ENST00000464008.6	+	25820231,25823018,25823237,25823643,25826301,25826614,25829508	25820659,25823128,25823323,25823748,25826411,25826826,25829658	1.000000
gastrocnemius_medialis_female_adult_53_years	chr8	22392840	22392884	22392883	+	High_confidence	12	12	35	1.980833	4.066677	chr8	22392932	22392982	LINE|L2|L2b	+	chr8	22392829	22404870	SLC39A14|ENST00000520832.1	+	22392829,22404695	22393232,22404870	0.742857
gastrocnemius_medialis_female_adult_53_years	chr13	20054958	20054959	20054958	+	RAMPAGE_only	26	27	34	1.924238	4.063651	chr13	20054938	20055210	DNA|TcMar-Tigger|MER8	+	chr13	20026518	20086747	ZMYM2|ENST00000382870.7	+	20026518,20027202,20027984,20031318,20034253,20036736,20051432,20052276,20058574,20059446,20061052,20062845,20064450,20066850,20067238,20082015,20082780,20083655,20085821	20026762,20027318,20028064,20031435,20034404,20036909,20051598,20052311,20058704,20059562,20061224,20062971,20064545,20067019,20067390,20082130,20083032,20083776,20086747	0.970588
gastrocnemius_medialis_female_adult_53_years	chr6	122444187	122444632	122444275	-	RAMPAGE_only	26	26	318	17.997284	5.369445	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	1.000000
gastrocnemius_medialis_female_adult_53_years	chr1	16019261	16019270	16019261	-	High_confidence	3	3	11	0.622548	3.095795	chr1	16019218	16019288	LINE|L2|L2b	+	chr1	16014027	16019594	HSPB7|ENST00000375718.4	-	16014027,16017073,16017764,16019133	16015759,16017207,16017852,16019594	1.000000
gastrocnemius_medialis_female_adult_53_years	chr11	8776425	8776435	8776425	-	High_confidence	5	5	10	0.565952	2.646439	chr11	8776369	8776474	LINE|L2|L2b	-	chr11	8730980	8776679	ST5|ENST00000533016.1	-	8730980,8750620,8776191	8731209,8750725,8776679	1.000000
gastrocnemius_medialis_female_adult_53_years	chr1	31384678	31384684	31384683	-	RAMPAGE_only	7	7	12	0.679143	2.663533	chr1	31384617	31384742	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.833333
gastrocnemius_medialis_female_adult_53_years	chr1	24092975	24093089	24092975	-	RAMPAGE_only	6	9	51	2.886357	4.763317	chr1	24092769	24092942	SINE|MIR|MIR3	-	chr1	24081548	24108439	MYOM3|ENST00000475306.1	-	24081548,24086643,24089537,24090064,24090796,24092173,24092946,24094852,24095441,24097922,24099679,24105919,24107072,24107992	24084639,24086827,24089665,24090118,24090996,24092315,24093108,24094990,24095486,24098011,24099775,24106077,24107232,24108439	0.960784
gastrocnemius_medialis_female_adult_53_years	chr11	46377191	46377192	46377191	+	High_confidence	4	5	7	0.396167	2.521641	chr11	46377234	46377297	LINE|L2|L2a	+	chr11	46377147	46379568	DGKZ|ENST00000529660.5	+	46377147,46378197,46378456,46378893,46379202,46379468	46377212,46378229,46378500,46379111,46379236,46379568	0.571429
gastrocnemius_medialis_female_adult_53_years	chr6	125214241	125214248	125214247	+	RAMPAGE_only	138	167	304	17.204951	6.390768	chr6	125213832	125214305	LTR|ERVL|LTR33	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.588816
gastrocnemius_medialis_female_adult_53_years	chr19	19349191	19349212	19349211	+	RAMPAGE_only	3	3	7	0.396167	2.521641	chr19	19349195	19349248	LINE|L1|X9_LINE	+	chr19	19347649	19357760	MAU2|ENST00000587709.5	+	19347649,19349154,19349324,19354354,19355263,19355707	19348938,19349232,19349436,19354445,19355391,19357760	1.000000
gastrocnemius_medialis_female_adult_53_years	chr7	131002253	131002296	131002290	-	RAMPAGE_only	7	7	39	2.207214	3.992709	chr7	131002039	131002345	SINE|Alu|AluSx	+	chr7	130944197	131052493	LINC-PINT|ENST00000643373.1	-	130944197,130945719,130984052,131052424	130944889,130945855,130984109,131052493	0.820513
gastrocnemius_medialis_female_adult_53_years	chr1	51651053	51651080	51651078	+	RAMPAGE_only	24	44	75	4.244642	5.189163	chr1	51650929	51651267	LINE|L2|L2c	-	chr1	51617113	51776912	OSBPL9|ENST00000489990.5	+	51617113,51651990,51669433,51714002,51745535,51746709,51748368,51750144,51765821,51772069,51772604,51776832	51617221,51652041,51669512,51714079,51745631,51746757,51748398,51750195,51765981,51772182,51772723,51776912	0.880000
gastrocnemius_medialis_female_adult_53_years	chr12	49013477	49013478	49013477	-	RAMPAGE_only	6	7	9	0.509357	2.750000	chr12	49013243	49013543	SINE|Alu|AluJb	-	chr12	49004571	49018415	PRKAG1|ENST00000552463.5	-	49004571,49004963,49005119,49005305,49005461,49005742,49013061,49016606,49018333	49004633,49005018,49005165,49005364,49005543,49005852,49013110,49016839,49018415	0.666667
gastrocnemius_medialis_female_adult_53_years	chr20	18794063	18794086	18794085	+	High_confidence	12	12	21	1.188500	3.880180	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
gastrocnemius_medialis_female_adult_53_years	chr1	39310293	39310318	39310293	+	RAMPAGE_only	3	4	10	0.565952	2.646439	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	1.000000
gastrocnemius_medialis_female_adult_53_years	chr10	62056930	62056931	62056930	+	RAMPAGE_only	54	54	64	3.622095	5.138759	chr10	62056749	62056941	DNA|hAT-Charlie|MER58A	+	chr10	62049210	62096948	ARID5B|NM_001244638.1	+	62049210,62050887,62057116,62059242,62069699,62085701,62090861	62049483,62051000,62057318,62059295,62069797,62085900,62096948	0.968750
gastrocnemius_medialis_female_adult_53_years	chr12	58781692	58781732	58781718	-	High_confidence	4	6	12	0.679143	3.418296	chr12	58781360	58781953	LTR|ERVL|MER70B	-	chr12	58565958	58781716	LOC101927653|NR_120452.1	-	58565958,58569103,58569274,58570701,58571327,58608877,58616934,58781570	58566588,58569159,58569368,58570780,58571432,58609549,58617128,58781716	0.500000
gastrocnemius_medialis_female_adult_53_years	chr7	36127210	36127244	36127243	-	High_confidence	7	13	29	1.641262	4.142295	chr7	36127036	36127200	LINE|CR1|L3	-	chr7	36065675	36127237	STRG.11889.2	-	36065675,36067834,36104946,36126804	36065741,36067876,36105291,36127237	1.000000
gastrocnemius_medialis_female_adult_53_years	chr1	225700904	225700930	225700929	+	High_confidence	3	5	11	0.622548	2.913977	chr1	225700876	225701240	LTR|ERVL-MaLR|MLT1L	-	chr1	225700663	225716413	STRG.2658.1	+	225700663,225710502,225716045	225701106,225710568,225716413	1.000000
gastrocnemius_medialis_female_adult_53_years	chr17	69547484	69547701	69547489	+	RAMPAGE_only	8	8	134	7.583761	5.247825	chr17	69547285	69547505	DNA|hAT-Charlie|MER58A	-	chr17	69414697	69553861	MAP2K6|ENST00000590474.6	+	69414697,69505779,69516854,69517499,69519312,69520269,69521048,69523513,69524900,69526569,69536114,69541675	69415000,69505846,69516903,69517613,69519432,69520386,69521100,69523641,69524978,69526709,69536160,69553861	0.985075
gastrocnemius_medialis_female_adult_53_years	chrX	11351636	11351676	11351675	-	High_confidence	94	95	145	8.206309	6.407083	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11137543	11351670	STRG.29239.4	-	11137543,11142232,11143979,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11351385	11139530,11142313,11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11351670	0.924138
gastrocnemius_medialis_female_adult_53_years	chr4	2867835	2867851	2867850	+	High_confidence	3	3	10	0.565952	2.947703	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.900000
gastrocnemius_medialis_female_adult_53_years	chr10	119038237	119038240	119038237	-	RAMPAGE_only	3	3	7	0.396167	2.807355	chr10	119037907	119038207	SINE|Alu|AluSq2	-	chr10	119033669	119080804	EIF3A|ENST00000369144.7	-	119033669,119037118,119038237,119041993,119044053,119049800,119050520,119051198,119056739,119056935,119057955,119059211,119059601,119060745,119061223,119065398,119069445,119070885,119072889,119073440,119073746,119080627	119036268,119037309,119038439,119042772,119044142,119049985,119050674,119051321,119056853,119057040,119058303,119059397,119059718,119060844,119061328,119065570,119069654,119071085,119073053,119073577,119073937,119080804	1.000000
gastrocnemius_medialis_female_adult_53_years	chr6	16277904	16277951	16277904	+	RAMPAGE_only	8	14	65	3.678690	5.556758	chr6	16277565	16277912	LINE|L2|L2b	-	chr6	16289517	16295544	GMPR|ENST00000544145.1	+	16289517,16290461,16295005	16289568,16290621,16295544	0.876923
gastrocnemius_medialis_female_adult_53_years	chr13	113400442	113400443	113400442	-	RAMPAGE_only	5	5	8	0.452762	3.000000	chr13	113400125	113400443	SINE|Alu|AluY	-	chr13	113399609	113410978	STRG.20554.6	-	113399609,113407949,113410855	113407823,113408220,113410978	0.750000
gastrocnemius_medialis_female_adult_53_years	chr17	77127869	77127877	77127872	+	High_confidence	5	5	13	0.735738	2.873141	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.615385
gastrocnemius_medialis_female_adult_53_years	chr9	62376632	62376642	62376632	+	High_confidence	6	6	18	1.018714	3.381580	chr9	62376600	62376639	SINE|MIR|MIRb	+	chr9	62376516	62434255	STRG.14547.1	+	62376516,62386773,62432875,62434066	62376813,62386883,62432979,62434255	0.888889
gastrocnemius_medialis_female_adult_53_years	chr14	80455237	80455292	80455291	+	High_confidence	18	19	51	2.886357	4.495641	chr14	80455279	80455449	LTR|ERVL-MaLR|MLT1J	+	chr14	80455274	80472977	STRG.21228.1	+	80455274,80464769,80471859	80455389,80464956,80472977	0.666667
gastrocnemius_medialis_female_adult_53_years	chr20	45825343	45825390	45825369	-	RAMPAGE_only	6	6	23	1.301690	3.060454	chr20	45825287	45825591	SINE|Alu|AluSx	-	chr20	45823213	45827314	TNNC2|NM_003279.2	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827314	1.000000
gastrocnemius_medialis_female_adult_53_years	chr2	231072213	231072255	231072254	+	RAMPAGE_only	8	8	30	1.697857	4.098069	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231066903	231075566	PSMD1|ENST00000444007.1	+	231066903,231070024,231072332,231075510	231067111,231070168,231072415,231075566	0.666667
gastrocnemius_medialis_female_adult_53_years	chr8	86368950	86368960	86368952	+	RAMPAGE_only	4	5	13	0.735738	2.873141	chr8	86368776	86369052	LINE|L2|L2c	+	chr8	86374040	86467476	WWP1|ENST00000265428.4	+	86374040,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	1.000000
gastrocnemius_medialis_female_adult_53_years	chr15	90762328	90762338	90762328	+	High_confidence	2	2	7	0.396167	2.584963	chr15	90762254	90762815	LINE|L2|L2b	-	chr15	90762363	90769181	BLM|ENST00000559426.5	+	90762363,90762965,90765295,90766909,90769132	90762422,90763157,90765414,90767023,90769181	0.714286
gastrocnemius_medialis_female_adult_53_years	chr17	69503978	69503979	69503978	+	RAMPAGE_only	9	9	12	0.679143	3.277613	chr17	69504024	69504180	SINE|MIR|MIR3	+	chr17	69505447	69521826	MAP2K6|ENST00000591445.1	+	69505447,69516854,69517499,69519312	69505846,69516903,69517613,69521826	0.666667
gastrocnemius_medialis_female_adult_53_years	chr19	5680213	5680252	5680248	-	High_confidence	22	23	116	6.565047	5.325041	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.948276
gastrocnemius_medialis_female_adult_53_years	chr2	178891337	178891349	178891348	-	RAMPAGE_only	5	6	12	0.679143	3.084963	chr2	178891208	178891370	SINE|MIR|MIR	-	chr2	178829756	179050059	CCDC141|NM_173648.3	-	178829756,178836893,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900,178886751,178888526,178905328,178918712,178944534,178961229,178975056,178978483,179047283,179049839	178834440,178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178885092,178886871,178888668,178905501,178918907,178944651,178961483,178975165,178978675,179047406,179050059	1.000000
gastrocnemius_medialis_female_adult_53_years	chr11	14337230	14337293	14337262	-	High_confidence	14	14	49	2.773166	4.361974	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.918367
gastrocnemius_medialis_female_adult_53_years	chr9	72363483	72363565	72363490	-	High_confidence	15	15	135	7.640356	5.791680	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.948148
gastrocnemius_medialis_female_adult_53_years	chr9	62376764	62376791	62376790	-	High_confidence	33	36	59	3.339119	3.814811	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	1.000000
gastrocnemius_medialis_female_adult_53_years	chr17	59620003	59620073	59620051	+	High_confidence	5	5	17	0.962119	3.327820	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59695112	STRG.24812.1	+	59619942,59644275,59647397,59648239,59651202,59655853,59660390,59661442,59663841,59664786,59666102,59666479,59666796,59668776,59673646,59674700,59676953,59679396,59680911,59681294,59681646,59682270,59682628,59682906,59683094,59683386,59683624,59683874,59685055,59685586,59687000,59690635,59693727	59620173,59644483,59647666,59648401,59651316,59656027,59660588,59661643,59663994,59664909,59666240,59666644,59666977,59668940,59673772,59674843,59677188,59679519,59681057,59681478,59681839,59682428,59682793,59683014,59683262,59683536,59683756,59683985,59685226,59685808,59687021,59690711,59695112	0.941176
gastrocnemius_medialis_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	39	39	39	2.207214	3.443654	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	1.000000
gastrocnemius_medialis_female_adult_53_years	chr15	41280579	41280718	41280644	+	RAMPAGE_only	22	22	96	5.433142	4.319943	chr15	41280505	41280810	SINE|Alu|AluSx3	-	chr15	41231238	41281887	CHP1|NM_007236.4	+	41231238,41243666,41256909,41262755,41270556,41278766,41279335	41231449,41243739,41256990,41262883,41270618,41278889,41281887	0.979167
gastrocnemius_medialis_female_adult_53_years	chr19	3062922	3062983	3062922	-	High_confidence	52	68	176	9.960761	5.802262	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.988636
gastrocnemius_medialis_female_adult_53_years	chr2	27967349	27967352	27967351	+	High_confidence	55	96	101	5.716118	5.246553	chr2	27967169	27967529	LTR|ERVL-MaLR|THE1B	+	chr2	27967362	28338901	STRG.3200.7	+	27967362,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28327273,28338449	27967443,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28327447,28338901	0.970297
gastrocnemius_medialis_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	30	31	31	1.754452	3.523231	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.935484
gastrocnemius_medialis_female_adult_53_years	chr5	112219334	112219335	112219334	+	RAMPAGE_only	30	31	31	1.754452	3.936243	chr5	112219140	112219503	LTR|ERVL-MaLR|THE1D	+	chr5	112228282	112257309	AC104126.1|ENST00000504004.1	+	112228282,112249597,112250614,112256862	112228352,112249632,112250773,112257309	0.967742
gastrocnemius_medialis_female_adult_53_years	chr20	20089012	20089045	20089044	-	High_confidence	8	9	29	1.641262	4.351823	chr20	20088660	20089017	LINE|RTE-X|L4_B_Mam	-	chr20	20072297	20089173	STRG.27520.6	-	20072297,20088366,20088851	20080997,20088435,20089173	0.793103
gastrocnemius_medialis_female_adult_53_years	chr2	26126455	26126476	26126455	+	RAMPAGE_only	98	103	155	8.772261	5.723550	chr2	26126295	26126597	SINE|Alu|AluSz6	+	chr2	26098529	26135068	RAB10|ENST00000473035.1	+	26098529,26098661,26109767,26127143,26127849,26134937	26098577,26098722,26109906,26127233,26127951,26135068	0.800000
gastrocnemius_medialis_female_adult_53_years	chr11	94872824	94873673	94873551	+	RAMPAGE_only	43	44	1241	70.234683	7.175133	chr11	94873471	94873673	SINE|MIR|MIRb	-	chr11	94768370	94876753	AMOTL1|ENST00000433060.2	+	94768370,94795010,94799389,94821529,94830049,94831451,94850113,94853932,94859524,94864734,94865941,94869197,94870688	94768560,94795160,94800311,94821821,94830194,94831541,94850259,94854082,94859715,94864860,94866168,94869473,94876753	1.000000
gastrocnemius_medialis_female_adult_53_years	chr10	75109324	75109348	75109324	+	RAMPAGE_only	4	4	10	0.565952	2.721928	chr10	75109354	75109498	SINE|MIR|MIRb	+	chr10	75111470	75176831	SAMD8|ENST00000372690.7	+	75111470,75150513,75164644,75168540,75176065,75176387	75111722,75151106,75164740,75168658,75176216,75176831	1.000000
gastrocnemius_medialis_female_adult_53_years	chr1	51403420	51403429	51403428	-	RAMPAGE_only	4	4	11	0.622548	2.913977	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	1.000000
gastrocnemius_medialis_female_adult_53_years	chr4	119145808	119145830	119145824	+	RAMPAGE_only	13	14	52	2.942952	4.858624	chr4	119145674	119147458	LINE|L1|L1MD1	-	chr4	119135783	119187789	MYOZ2|ENST00000307128.5	+	119135783,119136511,119150871,119158021,119164210,119185965	119135982,119136601,119151041,119158151,119164394,119187789	1.000000
gastrocnemius_medialis_female_adult_53_years	chr16	50668361	50668407	50668406	-	High_confidence	55	58	129	7.300785	4.359674	chr16	50668230	50668595	DNA|hAT-Charlie|MER113	+	chr16	50666563	50668439	STRG.23196.1	-	50666563,50667908,50668248	50666916,50668041,50668439	0.961240
gastrocnemius_medialis_female_adult_53_years	chr14	73725529	73725530	73725529	-	RAMPAGE_only	5	6	8	0.452762	2.750000	chr14	73725505	73725621	SINE|MIR|MIRb	+	chr14	73715123	73727133	ELMSAN1|ENST00000476562.5	-	73715123,73721296,73722697,73725271,73726032,73726603,73726829	73719501,73721509,73722847,73725360,73726108,73726707,73727133	0.875000
gastrocnemius_medialis_female_adult_53_years	chr22	35623191	35623192	35623191	-	High_confidence	16	16	16	0.905524	3.327820	chr22	35623096	35623262	SINE|MIR|MIR	-	chr22	35606763	35623354	MB|ENST00000359787.5	-	35606763,35610883,35617162,35623190	35607443,35611106,35617265,35623354	1.000000
gastrocnemius_medialis_female_adult_53_years	chr19	45424053	45424102	45424098	-	High_confidence	4	6	22	1.245095	3.820889	chr19	45424058	45424154	LINE|L2|L2b	-	chr19	45416490	45423938	ERCC1|ENST00000588300.1	-	45416490,45419097,45420323,45421177,45423269,45423822	45416897,45419197,45420427,45421393,45423381,45423938	0.954545
gastrocnemius_medialis_female_adult_53_years	chr19	45424148	45424197	45424148	-	High_confidence	33	33	145	8.206309	5.709977	chr19	45424058	45424154	LINE|L2|L2b	-	chr19	45416490	45423938	ERCC1|ENST00000588300.1	-	45416490,45419097,45420323,45421177,45423269,45423822	45416897,45419197,45420427,45421393,45423381,45423938	0.862069
gastrocnemius_medialis_female_adult_53_years	chr12	105332638	105332680	105332649	+	RAMPAGE_only	7	8	34	1.924238	4.194388	chr12	105332447	105332765	SINE|Alu|AluSq2	+	chr12	105330867	105370680	C12orf75|ENST00000549934.2	+	105330867,105348601,105365806,105366616,105367476,105370633	105330937,105348626,105365842,105366696,105367509,105370680	0.941176
gastrocnemius_medialis_female_adult_53_years	chrX	101550467	101550474	101550467	+	High_confidence	2	2	6	0.339571	2.584963	chrX	101550258	101550488	LINE|L1|L1M5	+	chrX	101550530	101554700	ARMCX1|ENST00000372829.7	+	101550530,101550970,101551568,101552808	101550660,101551024,101551633,101554700	0.833333
gastrocnemius_medialis_female_adult_53_years	chr14	50159440	50159454	50159440	-	RAMPAGE_only	9	9	15	0.848928	3.373557	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50108641	50180654	STRG.20807.3	-	50108641,50112614,50114284,50115838,50116079,50117601,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50174453,50180571	50109713,50112719,50114404,50115911,50116179,50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50174552,50180654	1.000000
gastrocnemius_medialis_female_adult_53_years	chr22	38201098	38201133	38201132	+	High_confidence	3	3	10	0.565952	2.646439	chr22	38200998	38201741	LINE|L2|L2a	-	chr22	38201881	38216511	MAFF|ENST00000338483.6	+	38201881,38213822,38214419	38202212,38213889,38216511	0.900000
gastrocnemius_medialis_female_adult_53_years	chr7	103353919	103353931	103353928	+	High_confidence	4	4	10	0.565952	2.521928	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.900000
gastrocnemius_medialis_female_adult_53_years	chr7	25839075	25839076	25839075	+	High_confidence	45	46	46	2.603381	4.728197	chr7	25838942	25839178	LTR|ERVL-MaLR|MLT1I	+	chr7	25839086	25847962	STRG.11761.1	+	25839086,25846088,25846727	25839353,25846222,25847962	0.956522
gastrocnemius_medialis_female_adult_53_years	chr15	52100537	52100542	52100541	-	High_confidence	5	5	11	0.622548	2.845351	chr15	52100279	52100861	LTR|ERVL|MER73	-	chr15	52056674	52100523	AC023906.5|ENST00000558607.1	-	52056674,52100469	52057255,52100523	1.000000
gastrocnemius_medialis_female_adult_53_years	chr6	33750457	33750487	33750486	-	High_confidence	172	174	411	23.260640	6.184816	chr6	33750365	33750686	LINE|L2|L2b	+	chr6	33722396	33750528	STRG.10425.3	-	33722396,33725440,33726730,33728086,33735277,33739132,33750403	33723187,33725616,33726906,33728300,33735655,33739261,33750528	0.980535
gastrocnemius_medialis_female_adult_53_years	chr22	38168076	38168090	38168076	-	High_confidence	5	5	9	0.509357	2.947703	chr22	38167963	38168270	LINE|L2|L2b	+	chr22	38140133	38168077	PLA2G6|ENST00000479641.5	-	38140133,38143104,38145437,38167942	38140169,38143288,38145653,38168077	0.777778
gastrocnemius_medialis_female_adult_53_years	chr2	96303166	96303331	96303166	-	RAMPAGE_only	9	10	79	4.471023	5.184747	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
gastrocnemius_medialis_female_adult_53_years	chr15	84836033	84836080	84836033	+	RAMPAGE_only	6	6	28	1.584666	4.546594	chr15	84835841	84837447	LINE|L2|L2a	-	chr15	84817379	84877805	STRG.22327.2	+	84817379,84827483,84838979,84839701,84856391,84859242,84859775,84860036,84862634,84863551,84864441,84867316,84868110	84817595,84827605,84839097,84840932,84858555,84859390,84859903,84860072,84862915,84863640,84864665,84867365,84877805	0.892857
gastrocnemius_medialis_female_adult_53_years	chr9	72577919	72577949	72577919	+	High_confidence	2	2	15	0.848928	3.506891	chr9	72577878	72578168	SINE|Alu|AluSz	-	chr9	72577919	72700736	TMC1|ENST00000646244.1	+	72577919,72607816,72616367,72627920,72688708,72694542,72700517	72578023,72607925,72616477,72628063,72688756,72694714,72700736	0.866667
gastrocnemius_medialis_female_adult_53_years	chr12	53427241	53427250	53427241	+	RAMPAGE_only	96	96	217	12.281165	5.422316	chr12	53427040	53427257	LINE|L2|L2a	-	chr12	53429892	53431588	STRG.19030.1	+	53429892,53430145,53431176	53429978,53430282,53431588	0.741935
gastrocnemius_medialis_female_adult_53_years	chr18	34709369	34709389	34709388	+	High_confidence	5	5	9	0.509357	2.641604	chr18	34709150	34709395	LINE|L2|L2c	-	chr18	34709355	34812056	DTNA|ENST00000585446.1	+	34709355,34794036,34806218,34811958	34709517,34794250,34806304,34812056	0.666667
gastrocnemius_medialis_female_adult_53_years	chr10	6175744	6175746	6175744	+	High_confidence	138	186	248	14.035618	6.148750	chr10	6175715	6176306	LINE|L1|L1ME3	+	chr10	6175692	6177437	STRG.15690.1	+	6175692	6177437	1.000000
gastrocnemius_medialis_female_adult_53_years	chr15	50766169	50766227	50766169	-	High_confidence	5	5	26	1.471476	4.168296	chr15	50766003	50766223	LINE|L2|L2a	+	chr15	50702265	50765808	SPPL2A|ENST00000261854.9	-	50702265,50719939,50722123,50725220,50726320,50730964,50732602,50736100,50736643,50739679,50747494,50748112,50748687,50749635,50765467	50707874,50720100,50722201,50725323,50726377,50731039,50732684,50736202,50736740,50739828,50747628,50748202,50748870,50749746,50765808	0.769231
gastrocnemius_medialis_female_adult_53_years	chr7	75028259	75028337	75028259	+	RAMPAGE_only	2	2	16	0.905524	3.750000	chr7	75028116	75028420	SINE|Alu|AluSz	-	chr7	74964817	75031532	GATSL2|NM_001145064.2	+	74964817,75007993,75017597,75017989,75018971,75020038,75021873,75024439,75024633	74965098,75008064,75017791,75018122,75019095,75020149,75021956,75024534,75031532	1.000000
gastrocnemius_medialis_female_adult_53_years	chr18	11177652	11177682	11177681	+	High_confidence	10	10	29	1.641262	4.180451	chr18	11177547	11177721	SINE|MIR|MIRb	-	chr18	11177945	11198890	STRG.25399.1	+	11177945,11185293,11198824	11179520,11185420,11198890	0.793103
gastrocnemius_medialis_female_adult_53_years	chr15	84778198	84778219	84778198	+	High_confidence	4	8	15	0.848928	2.789898	chr15	84778174	84778672	LTR|ERV1|LTR9B	-	chr15	84778259	84802438	ZNF592|ENST00000559607.1	+	84778259,84782656,84790704,84797868,84798314,84798587,84799097,84799841,84801862	84778312,84784895,84790872,84798045,84798474,84798875,84799210,84799977,84802438	0.933333
gastrocnemius_medialis_female_adult_53_years	chr10	13136850	13137209	13137096	+	RAMPAGE_only	27	27	497	28.127830	5.515388	chr10	13136997	13137298	SINE|Alu|AluSz	+	chr10	13112486	13138291	STRG.15723.7	+	13112486,13116266,13118887,13122384,13123994,13125417,13125945,13127744,13132066,13133501,13136744	13112635,13116340,13119040,13122487,13124110,13125836,13126039,13127903,13132197,13133581,13138291	0.997988
gastrocnemius_medialis_female_adult_53_years	chr5	95844442	95844460	95844453	+	RAMPAGE_only	3	3	17	0.962119	3.750000	chr5	95844427	95844652	LTR|ERVL-MaLR|MLT1K	+	chr5	95843196	95860133	STRG.9111.12	+	95843196,95848840,95852791,95856877,95858803	95848142,95852714,95852926,95856981,95860133	0.941176
gastrocnemius_medialis_female_adult_53_years	chr17	39183741	39183832	39183741	-	RAMPAGE_only	7	7	43	2.433595	4.570609	chr17	39183514	39183691	SINE|MIR|MIRb	-	chr17	39177416	39178270	CACNB1|ENST00000582544.1	-	39177416,39177983	39177535,39178270	0.581395
gastrocnemius_medialis_female_adult_53_years	chr1	31373705	31373706	31373705	-	High_confidence	15	15	15	0.848928	3.506891	chr1	31373523	31373667	SINE|MIR|MIRb	-	chr1	31365252	31373288	FABP3|NM_001320996.1	-	31365252,31367392,31369384,31372941	31365939,31367494,31369590,31373288	0.533333
gastrocnemius_medialis_female_adult_53_years	chr6	43025307	43025308	43025307	+	High_confidence	28	28	33	1.867643	3.293654	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	1.000000
gastrocnemius_medialis_female_adult_53_years	chr8	17935185	17935211	17935185	+	RAMPAGE_only	6	9	22	1.245095	3.879664	chr8	17934728	17935264	LTR|Gypsy?|LTR85a	-	chr8	17937175	17939016	PCM1|ENST00000518985.1	+	17937175,17938838	17937379,17939016	0.818182
gastrocnemius_medialis_female_adult_53_years	chr3	33864011	33864082	33864081	+	RAMPAGE_only	9	9	44	2.490190	4.235210	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.931818
gastrocnemius_medialis_female_adult_53_years	chr17	32479863	32479875	32479863	+	High_confidence	5	7	21	1.188500	3.003113	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.809524
gastrocnemius_medialis_female_adult_53_years	chr3	152395904	152395933	152395932	+	RAMPAGE_only	20	30	56	3.169333	3.385423	chr3	152395923	152396404	DNA|hAT-Charlie|MER1A	+	chr3	152300197	152459302	MBNL1|ENST00000464596.5	+	152300197,152414940,152432716,152445281,152447619,152459270	152300367,152415111,152432920,152445539,152447773,152459302	0.892857
gastrocnemius_medialis_female_adult_53_years	chr8	123025500	123025530	123025529	-	High_confidence	27	29	53	2.999547	4.475457	chr8	123025370	123025551	LINE|L2|L2b	+	chr8	123015441	123025650	DERL1|ENST00000519018.5	-	123015441,123019194,123021446,123022683,123023712,123024985,123025571	123015585,123019305,123021499,123022779,123023739,123025050,123025650	0.867925
gastrocnemius_medialis_female_adult_53_years	chr10	30999513	30999520	30999513	-	High_confidence	5	5	14	0.792333	3.180833	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.714286
gastrocnemius_medialis_female_adult_53_years	chr3	152267410	152267462	152267426	-	RAMPAGE_only	4	7	28	1.584666	4.253434	chr3	152267213	152267496	LINE|L2|L2c	+	chr3	152262615	152269555	MBNL1-AS1|ENST00000608395.1	-	152262615,152269427	152269072,152269555	1.000000
gastrocnemius_medialis_female_adult_53_years	chr8	38825317	38825367	38825366	+	RAMPAGE_only	6	6	19	1.075309	3.431624	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	1.000000
gastrocnemius_medialis_female_adult_53_years	chr9	112471284	112471522	112471432	+	RAMPAGE_only	8	9	142	8.036523	4.223527	chr9	112471252	112471587	LTR|ERVL-MaLR|MLT1B	+	chr9	112380079	112472405	HSDL2|ENST00000398803.1	+	112380079,112403994,112405623,112418859,112438430,112441698,112454012,112459448,112470431	112380180,112404158,112405722,112418958,112438625,112441770,112454162,112459577,112472405	0.957746
gastrocnemius_medialis_female_adult_53_years	chr6	54655589	54655610	54655589	+	High_confidence	10	10	21	1.188500	3.681881	chr6	54655049	54655728	LINE|L2|L2a	+	chr6	54655465	54667793	STRG.10645.1	+	54655465,54667541	54655692,54667793	0.571429
gastrocnemius_medialis_female_adult_53_years	chr1	39382097	39382146	39382145	+	RAMPAGE_only	3	3	12	0.679143	3.084963	chr1	39382176	39382271	SINE|MIR|MIRb	+	chr1	39331137	39486987	MACF1|ENST00000289893.8	+	39331137,39337181,39340501,39340803,39346976,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39378460,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39427960,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39465094,39468614,39479797,39484600,39485537	39336653,39337331,39340717,39340953,39347210,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39378523,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39428287,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39465112,39468732,39480009,39484730,39486987	1.000000
gastrocnemius_medialis_female_adult_53_years	chr19	50451904	50451991	50451986	+	RAMPAGE_only	15	18	93	5.263357	5.500312	chr19	50452004	50452188	SINE|MIR|MIRb	+	chr19	50432902	50466321	MYBPC2|ENST00000357701.5	+	50432902,50435160,50435775,50436011,50436616,50437472,50437658,50440879,50442180,50443493,50443710,50445879,50448224,50450828,50451279,50451863,50454019,50454264,50455107,50455509,50458586,50458917,50459110,50460039,50461541,50461899,50464345,50466194	50432972,50435250,50435862,50436160,50436734,50437521,50437718,50441076,50442313,50443618,50443816,50446052,50448390,50450935,50451309,50452003,50454179,50454369,50455296,50455644,50458754,50459006,50459306,50460179,50461701,50462036,50464532,50466321	0.946237
gastrocnemius_medialis_female_adult_53_years	chr3	180870518	180870519	180870518	-	High_confidence	9	13	13	0.735738	3.334679	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180866624	180870509	STRG.6853.2	-	180866624	180870509	0.692308
gastrocnemius_medialis_female_adult_53_years	chr18	34907122	34907126	34907125	-	High_confidence	103	126	168	9.507999	6.265888	chr18	34906945	34907321	LTR|ERVL-MaLR|THE1C	-	chr18	34892075	34907120	STRG.25541.1	-	34892075,34893159,34902852,34905103,34907028	34892450,34893644,34902932,34905556,34907120	0.595238
gastrocnemius_medialis_female_adult_53_years	chr3	179785633	179786185	179785836	+	RAMPAGE_only	27	29	421	23.826593	6.017015	chr3	179785740	179785926	SINE|MIR|MIRc	+	chr3	179653144	179789401	USP13|NM_003940.2	+	179653144,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653393,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179789401	1.000000
gastrocnemius_medialis_female_adult_53_years	chr16	2205819	2205860	2205819	+	High_confidence	3	3	17	0.962119	2.780639	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.941176
gastrocnemius_medialis_female_adult_53_years	chr11	107719823	107719824	107719823	-	High_confidence	19	19	21	1.188500	3.010571	chr11	107719646	107719884	LTR|Gypsy?|LTR88c	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.904762
gastrocnemius_medialis_female_adult_53_years	chr5	149180494	149180522	149180521	-	High_confidence	4	4	8	0.452762	2.750000	chr5	149180305	149180797	LTR|ERVL|LTR86A1	-	chr5	149174358	149180546	STRG.9654.1	-	149174358,149176943,149180432	149174722,149177079,149180546	1.000000
gastrocnemius_medialis_female_adult_53_years	chr2	29175500	29175549	29175548	+	RAMPAGE_only	2	2	7	0.396167	2.807355	chr2	29175307	29175605	LINE|CR1|L3	+	chr2	29160365	29181923	STRG.3240.6	+	29160365,29163830,29167475,29174372,29174904,29181571	29160467,29163954,29167540,29174571,29175600,29181923	0.714286
gastrocnemius_medialis_female_adult_53_years	chr13	52661470	52661490	52661470	+	RAMPAGE_only	2	2	7	0.396167	2.521641	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
gastrocnemius_medialis_female_adult_53_years	chr3	128626815	128626821	128626815	-	RAMPAGE_only	3	3	7	0.396167	2.584963	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.857143
gastrocnemius_medialis_female_adult_53_years	chr2	28165292	28165304	28165303	+	RAMPAGE_only	5	7	17	0.962119	3.616875	chr2	28165020	28165437	LINE|L2|L2b	-	chr2	27978262	28338901	STRG.3200.6	+	27978262,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28327273,28338449	27978374,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28327447,28338901	1.000000
gastrocnemius_medialis_female_adult_53_years	chr8	17530646	17530693	17530646	+	RAMPAGE_only	16	16	53	2.999547	4.991703	chr8	17530573	17530871	SINE|Alu|AluSz	-	chr8	17538776	17570568	SLC7A2|NM_003046.5	+	17538776,17543317,17544450,17548677,17550300,17551763,17554945,17558294,17560327,17561943,17563602,17564949	17538922,17543715,17544606,17548843,17550434,17551986,17555082,17558397,17560533,17562110,17563711,17570568	0.773585
gastrocnemius_medialis_female_adult_53_years	chr8	119875413	119875440	119875413	+	RAMPAGE_only	8	10	18	1.018714	3.836592	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	1.000000
gastrocnemius_medialis_female_adult_53_years	chr3	33838228	33838285	33838260	+	RAMPAGE_only	6	11	38	2.150619	4.428996	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.947368
gastrocnemius_medialis_female_adult_53_years	chr14	93978826	93978827	93978826	-	RAMPAGE_only	6	6	6	0.339571	2.584963	chr14	93978752	93978860	SINE|MIR|MIR3	-	chr14	93978447	93983865	STRG.21352.1	-	93978447,93983114	93978586,93983865	0.500000
gastrocnemius_medialis_female_adult_53_years	chr16	11024570	11024571	11024570	+	High_confidence	6	6	7	0.396167	2.584963	chr16	11024601	11024707	LINE|L2|L2b	+	chr16	11024507	11136283	CLEC16A|ENST00000646363.1	+	11024507,11024820,11039753,11042253,11044027,11047291,11051512,11060901,11120614,11123741,11125978,11136068	11024571,11024921,11039876,11042363,11044105,11047342,11051641,11061022,11120766,11123946,11126146,11136283	0.714286
gastrocnemius_medialis_female_adult_53_years	chr7	134527596	134527597	134527596	+	High_confidence	14	14	14	0.792333	3.807355	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.928571
gastrocnemius_medialis_female_adult_53_years	chr17	47067498	47067518	47067498	-	High_confidence	145	154	532	30.108663	5.829494	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.828947
gastrocnemius_medialis_female_adult_53_years	chr1	37152542	37152587	37152586	-	High_confidence	4	4	15	0.848928	3.378783	chr1	37152131	37152598	LINE|L2|L2c	+	chr1	37101659	37152725	STRG.678.1	-	37101659,37103541,37152431	37102501,37103878,37152725	0.600000
gastrocnemius_medialis_female_adult_53_years	chr1	231799584	231799593	231799592	+	RAMPAGE_only	5	5	15	0.848928	3.323231	chr1	231799399	231799683	LINE|L2|L2a	-	chr1	231626836	232009654	DISC1|ENST00000422590.6	+	231626836,231693829,231701954,231749925,231767139,231770834,231795241,231800107,231818328,231958827,232008784	231626934,231694805,231702024,231750076,231767269,231771070,231795296,231800210,231818517,231958888,232009654	1.000000
gastrocnemius_medialis_female_adult_53_years	chr15	80059915	80059933	80059918	+	High_confidence	136	146	249	14.092213	5.012754	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.983936
gastrocnemius_medialis_female_adult_53_years	chr17	61952970	61952982	61952970	-	RAMPAGE_only	4	4	12	0.679143	2.663533	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.916667
gastrocnemius_medialis_female_adult_53_years	chr19	48868595	48868631	48868595	-	High_confidence	127	132	483	27.335497	7.139717	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.995859
gastrocnemius_medialis_female_adult_53_years	chr7	95594390	95594391	95594390	-	RAMPAGE_only	9	9	9	0.509357	2.947703	chr7	95594375	95594617	SINE|MIR|MIR	-	chr7	95583498	95596491	PDK4|ENST00000005178.5	-	95583498,95587009,95587417,95587726,95589639,95591987,95592510,95592759,95593698,95595022,95596163	95585781,95587123,95587528,95587825,95589716,95592065,95592597,95592944,95593770,95595164,95596491	1.000000
gastrocnemius_medialis_female_adult_53_years	chr12	45292685	45292722	45292685	+	High_confidence	24	30	85	4.810595	5.179836	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.976471
gastrocnemius_medialis_female_adult_53_years	chr11	77175226	77175255	77175226	+	High_confidence	5	5	14	0.792333	3.238901	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.928571
gastrocnemius_medialis_female_adult_53_years	chr1	43720533	43720534	43720533	-	RAMPAGE_only	9	12	13	0.735738	3.022055	chr1	43720395	43720757	LTR|ERVL-MaLR|MSTD	-	chr1	43709391	43727343	AL451062.1|ENST00000437753.1	-	43709391,43718993,43720470,43727232	43709535,43719126,43720551,43727343	0.538462
gastrocnemius_medialis_female_adult_53_years	chr10	122127024	122127025	122127024	+	High_confidence	16	16	16	0.905524	3.750000	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.625000
gastrocnemius_medialis_female_adult_53_years	chr2	218287266	218287306	218287279	-	High_confidence	125	126	373	21.110022	5.804634	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.911528
gastrocnemius_medialis_female_adult_53_years	chr10	27121396	27121432	27121399	-	RAMPAGE_only	8	8	26	1.471476	3.569774	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	0.923077
gastrocnemius_medialis_female_adult_53_years	chr15	66401878	66401899	66401878	+	RAMPAGE_only	3	3	10	0.565952	2.846439	chr15	66401474	66401958	LINE|L2|L2c	-	chr15	66386872	66491544	MAP2K1|NM_002755.3	+	66386872,66435026,66436745,66443279,66444655,66481754,66484989,66487227,66489214,66489717,66490501	66387427,66435237,66436892,66443357,66444707,66481879,66485191,66487292,66489276,66489763,66491544	1.000000
gastrocnemius_medialis_female_adult_53_years	chr2	240022172	240022244	240022181	-	RAMPAGE_only	7	8	34	1.924238	3.303007	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.941176
gastrocnemius_medialis_female_adult_53_years	chr11	74071049	74071073	74071070	-	High_confidence	50	56	119	6.734833	5.881393	chr11	74070756	74071175	LINE|L2|L2c	+	chr11	74014469	74071114	STRG.17815.8	-	74014469,74016598,74028286,74033350,74037477,74042053,74048204,74049336,74054606,74057405,74070176	74014629,74016801,74028398,74034278,74037698,74042218,74048338,74049542,74054671,74057544,74071114	0.966387
gastrocnemius_medialis_female_adult_53_years	chr7	150991040	150991056	150991055	+	High_confidence	4	4	8	0.452762	2.521641	chr7	150990674	150991176	LTR|ERV1|LTR10A	-	chr7	150991055	151014599	NOS3|NM_000603.4	+	150991055,150993752,150995202,150996403,150996762,150998356,150998538,150998945,150999189,151000497,151001230,151001543,151001820,151002199,151006426,151006888,151007101,151008929,151009188,151009397,151010114,151010596,151010898,151012350,151013230,151013723,151014007	150991300,150993961,150995314,150996552,150996925,150998448,150998680,150999085,150999364,151000599,151001425,151001617,151001965,151002304,151006494,151007005,151007276,151009062,151009267,151009585,151010287,151010807,151010986,151012472,151013379,151013918,151014599	0.750000
gastrocnemius_medialis_female_adult_53_years	chrX	5726324	5726356	5726324	-	High_confidence	19	19	33	1.867643	4.003045	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.909091
gastrocnemius_medialis_female_adult_53_years	chr11	113878754	113878755	113878754	-	RAMPAGE_only	12	12	12	0.679143	2.584963	chr11	113878589	113878950	LTR|ERVL-MaLR|THE1A	-	chr11	113797873	113875570	USP28|ENST00000003302.8	-	113797873,113801482,113803157,113803797,113804672,113804867,113806488,113808297,113809062,113812275,113813884,113815173,113817657,113823604,113827232,113829196,113830866,113831919,113833419,113834248,113840597,113841662,113852500,113854257,113875444	113799415,113801678,113803281,113803877,113804751,113805046,113806584,113808437,113809254,113812504,113813955,113815382,113817837,113823700,113827360,113829345,113830943,113831993,113833557,113834335,113840757,113841768,113852633,113854335,113875570	1.000000
gastrocnemius_medialis_female_adult_53_years	chr2	85694131	85694132	85694131	+	High_confidence	25	36	37	2.094024	4.683542	chr2	85694093	85694142	DNA|hAT|MER53	-	chr2	85694290	85698851	GNLY|NM_012483.3	+	85694290,85694752,85695319,85695957,85697505,85698563	85694470,85694996,85695423,85696056,85697677,85698851	0.945946
gastrocnemius_medialis_female_adult_53_years	chr6	79631294	79631329	79631302	+	High_confidence	58	58	158	8.942047	5.850288	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.987342
gastrocnemius_medialis_female_adult_53_years	chr2	174757954	174757979	174757978	-	RAMPAGE_only	5	5	14	0.792333	3.664498	chr2	174757829	174758006	SINE|MIR|MIR	-	chr2	174747809	174764412	CHRNA1|ENST00000409219.5	-	174747809,174749945,174753502,174754218,174757565,174759330,174759487,174764351	174748255,174750169,174753740,174754414,174757675,174759375,174759633,174764412	0.928571
gastrocnemius_medialis_female_adult_53_years	chr1	64945838	64945885	64945838	-	RAMPAGE_only	4	6	16	0.905524	3.750000	chr1	64945727	64946036	SINE|Alu|AluSx1	-	chr1	64833228	64966504	JAK1|ENST00000342505.4	-	64833228,64835395,64836097,64837931,64838464,64839602,64841244,64841450,64844063,64844753,64845512,64846648,64847531,64850803,64855508,64857655,64860104,64864786,64866865,64869310,64873369,64879024,64883276,64886258,64966332	64834657,64835506,64836215,64838104,64838589,64839795,64841339,64841601,64844215,64844889,64845640,64846736,64847675,64850910,64855698,64857779,64860262,64864972,64867208,64869474,64873523,64879148,64883475,64886341,64966504	0.812500
gastrocnemius_medialis_female_adult_53_years	chr4	118976479	118976480	118976479	-	High_confidence	537	540	542	30.674616	5.781563	chr4	118976073	118977610	LTR|ERV1|LTR12C	-	chr4	118973505	118976248	STRG.8017.1	-	118973505	118976248	0.964945
gastrocnemius_medialis_female_adult_53_years	chr2	29175264	29175353	29175352	+	High_confidence	191	196	678	38.371567	7.137931	chr2	29175307	29175605	LINE|CR1|L3	+	chr2	29175362	29181758	CLIP4|ENST00000481628.1	+	29175362,29181571	29175600,29181758	0.836283
gastrocnemius_medialis_female_adult_53_years	chr20	50404808	50404843	50404842	-	RAMPAGE_only	8	8	28	1.584666	3.484684	chr20	50404571	50404892	LINE|L2|L2b	+	chr20	50401572	50402104	STRG.27887.1	-	50401572	50402104	0.821429
gastrocnemius_medialis_female_adult_53_years	chr10	80195810	80195813	80195810	-	High_confidence	72	78	115	6.508452	5.573868	chr10	80195647	80195982	LTR|ERVL-MaLR|THE1B	-	chr10	80155587	80195916	STRG.16262.5	-	80155587,80157640,80157966,80159099,80161934,80163348,80163533,80164052,80166083,80166889,80167225,80168968,80170799,80172806,80176106,80195730	80155912,80157763,80158025,80159195,80162028,80163405,80163613,80164143,80166197,80166984,80167313,80169358,80170915,80172869,80176155,80195916	0.982609
gastrocnemius_medialis_female_adult_53_years	chr21	28090265	28090314	28090313	+	High_confidence	4	4	12	0.679143	3.095795	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.916667
gastrocnemius_medialis_female_adult_53_years	chr16	24745720	24745743	24745734	+	RAMPAGE_only	3	3	11	0.622548	3.121928	chr16	24745668	24745829	SINE|Alu|AluJr	-	chr16	24729727	24826227	TNRC6A|NM_014494.2	+	24729727,24730252,24750725,24758338,24776932,24789231,24793472,24794543,24795906,24797489,24797914,24804176,24804704,24805013,24805604,24806205,24806573,24809349,24815146,24816815,24818592,24820138,24822076,24822873,24823431	24729846,24730300,24750813,24758360,24777358,24791817,24793649,24794719,24795939,24797570,24797966,24804319,24804851,24805151,24805733,24806283,24806784,24809481,24815305,24816956,24818700,24820360,24822147,24823013,24826227	0.909091
gastrocnemius_medialis_female_adult_53_years	chr5	139364579	139364620	139364619	+	RAMPAGE_only	7	7	32	1.811047	4.063563	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.906250
gastrocnemius_medialis_female_adult_53_years	chr8	19955925	19955945	19955944	+	High_confidence	3	3	7	0.396167	2.584963	chr8	19955939	19955979	DNA|TcMar-Tigger|Tigger19b	+	chr8	19956004	19967196	LPL|ENST00000650478.1	+	19956004,19960900,19962114,19965309	19956083,19961083,19962219,19967196	0.714286
gastrocnemius_medialis_female_adult_53_years	chr4	76078949	76079006	76078986	+	RAMPAGE_only	5	5	16	0.905524	3.750000	chr4	76078798	76079093	SINE|Alu|AluY	+	chr4	76075250	76082278	ART3|ENST00000510423.1	+	76075250,76075880,76081823	76075277,76075958,76082278	1.000000
gastrocnemius_medialis_female_adult_53_years	chr2	200889279	200889294	200889293	-	High_confidence	4	4	15	0.848928	3.506891	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	1.000000
gastrocnemius_medialis_female_adult_53_years	chr10	72220368	72220369	72220368	+	RAMPAGE_only	6	6	7	0.396167	2.584963	chr10	72220369	72220666	SINE|Alu|AluJo	+	chr10	72223132	72233829	ANAPC16|ENST00000470481.2	+	72223132,72230365,72233000	72224056,72230440,72233829	0.857143
gastrocnemius_medialis_female_adult_53_years	chr4	118976080	118976193	118976185	+	RAMPAGE_only	94	98	261	14.771356	6.090087	chr4	118976073	118977610	LTR|ERV1|LTR12C	-	chr4	119023470	119061247	SYNPO2|ENST00000504178.1	+	119023470,119026626,119029844,119057400	119023581,119027438,119031853,119061247	0.946360
gastrocnemius_medialis_female_adult_53_years	chr9	33332498	33332499	33332498	+	RAMPAGE_only	6	6	9	0.509357	2.725481	chr9	33332505	33332844	LINE|L1|L1ME2z	+	chr9	33342811	33351882	NFX1|ENST00000466971.1	+	33342811,33344068,33347037,33351559	33342854,33344188,33347117,33351882	0.666667
gastrocnemius_medialis_female_adult_53_years	chr2	178679598	178679659	178679658	-	RAMPAGE_only	64	72	597	33.787353	6.691579	chr2	178679617	178679655	LINE|CR1|L3	-	chr2	178636751	178702520	TTN|ENST00000414766.5	-	178636751,178639698,178640047,178640540,178641240,178642236,178673632,178674313,178678124,178678413,178678746,178681660,178682696,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453	178636799,178639788,178640110,178640630,178641315,178642317,178673710,178674409,178678208,178678497,178678830,178681738,178682903,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702520	0.864322
gastrocnemius_medialis_male_adult_37_years	chr11	65434170	65434264	65434171	+	RAMPAGE_only	7	12	73	2.543243	5.515489	chr11	65433870	65434194	LINE|L1|L1ME3F	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.986301
gastrocnemius_medialis_male_adult_37_years	chr17	78173683	78173684	78173683	+	High_confidence	5	5	7	0.243873	2.521641	chr17	78173701	78173998	SINE|Alu|AluSz	+	chr17	78173680	78174248	STRG.68871.1	+	78173680	78174248	0.857143
gastrocnemius_medialis_male_adult_37_years	chr12	643625	643636	643625	-	High_confidence	657	662	1543	53.756486	5.642997	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.948153
gastrocnemius_medialis_male_adult_37_years	chr3	155292863	155292888	155292887	-	High_confidence	9	10	33	1.149685	4.090018	chr3	155292856	155293079	SINE|MIR|MIR	+	chr3	155290231	155293700	LOC100507537|NR_037902.1	-	155290231,155290939,155293619	155290846,155291038,155293700	0.878788
gastrocnemius_medialis_male_adult_37_years	chr21	28048446	28048447	28048446	+	High_confidence	233	236	260	9.058125	4.106176	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.984615
gastrocnemius_medialis_male_adult_37_years	chr7	82214040	82214042	82214040	-	RAMPAGE_only	7	13	17	0.592262	3.327820	chr7	82213847	82214213	LTR|ERVL-MaLR|MLT1A0	-	chr7	81950101	82443715	CACNA2D1|ENST00000356253.9	-	81950101,81959274,81959719,81961893,81962439,81964055,81964206,81965593,81967168,81967595,81968886,81969880,81970674,81971776,81974454,81982566,81984634,81991184,81994867,81997178,82001658,82005422,82005764,82007678,82012153,82013460,82014400,82032796,82038076,82060427,82064303,82066454,82084768,82117043,82136634,82170549,82335134,82349567,82443364	81950508,81959357,81959829,81962023,81962495,81964108,81964359,81965665,81967207,81967663,81968973,81969984,81970737,81971864,81974552,81982627,81984711,81991246,81994939,81997250,82001715,82005497,82005839,82007756,82012243,82013510,82014479,82032901,82038235,82060527,82064354,82066524,82084900,82117173,82136676,82170609,82335251,82349649,82443715	0.764706
gastrocnemius_medialis_male_adult_37_years	chr2	29175269	29175353	29175269	+	High_confidence	114	119	552	19.231096	7.176541	chr2	29175307	29175605	LINE|CR1|L3	+	chr2	29175362	29181758	CLIP4|ENST00000481628.1	+	29175362,29181571	29175600,29181758	0.766304
gastrocnemius_medialis_male_adult_37_years	chr17	29667414	29667421	29667414	-	RAMPAGE_only	5	7	19	0.661940	3.503258	chr17	29667384	29667678	DNA|hAT-Charlie|MER1B	+	chr17	29625937	29761390	STRG.67195.4	-	29625937,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677741,29684684,29695523,29703062,29761390	0.947368
gastrocnemius_medialis_male_adult_37_years	chr7	134246984	134247005	134247004	+	RAMPAGE_only	4	5	11	0.383228	3.321928	chr7	134246961	134247060	LINE|L2|L2c	+	chr7	134127351	134264181	LRGUK|NM_144648.1	+	134127351,134137022,134139435,134143061,134148237,134158034,134163396,134174555,134176976,134178502,134183733,134191654,134196991,134199219,134201480,134221778,134247555,134248950,134258256,134263844	134127664,134137130,134139517,134143162,134148319,134158159,134163540,134174636,134177063,134178609,134183853,134191751,134197105,134199421,134201576,134221918,134247644,134249076,134258405,134264181	0.818182
gastrocnemius_medialis_male_adult_37_years	chr7	121060776	121060777	121060776	+	High_confidence	600	606	695	24.213064	5.688185	chr7	121059787	121061189	LTR|ERV1|LTR12C	+	chr7	121060768	121238651	STRG.36352.6	+	121060768,121064237,121097698,121099925,121124330,121125819,121127089,121128381,121130124,121133822,121136039,121140826,121141972,121236713	121061204,121064313,121097831,121100094,121124473,121125892,121127257,121128486,121130294,121133893,121136090,121141013,121142141,121238651	0.974101
gastrocnemius_medialis_male_adult_37_years	chr2	158717606	158717609	158717606	-	RAMPAGE_only	2	2	7	0.243873	2.807355	chr2	158717539	158717675	SINE|MIR|MIR	+	chr2	158678655	158723980	PKP4-AS1|ENST00000629904.2	-	158678655,158722763	158679389,158723980	0.857143
gastrocnemius_medialis_male_adult_37_years	chrX	38612597	38612626	38612625	+	RAMPAGE_only	24	28	62	2.160014	4.774438	chrX	38612500	38614189	LINE|L1|HAL1	-	chrX	38611183	38688913	STRG.76880.2	+	38611183,38666120,38671375,38674220,38675704,38681203,38687598,38687938	38612666,38666309,38671450,38674316,38675860,38681287,38687674,38688913	0.806452
gastrocnemius_medialis_male_adult_37_years	chr11	65439548	65439637	65439579	+	RAMPAGE_only	4	4	53	1.846464	5.118427	chr11	65439400	65439684	SINE|Alu|AluSz6	+	chr11	65437268	65444557	STRG.49355.6	+	65437268,65444327	65444302,65444557	0.981132
gastrocnemius_medialis_male_adult_37_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	13	14	18	0.627101	3.852169	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182909114	183038472	NCKAP1|ENST00000361354.8	-	182909114,182926815,182928116,182928782,182930694,182934751,182935292,182942069,182952404,182952792,182953112,182956461,182957456,182962158,182964675,182967215,182976892,182978833,182981243,182982820,182983285,182986170,182989029,182994838,182995700,183001952,183002126,183002973,183003232,183023805,183037991	182925818,182926905,182928226,182928899,182930788,182934832,182935375,182942163,182952502,182952923,182953331,182956593,182957596,182962278,182964808,182967361,182976951,182978915,182981376,182982927,182983382,182986227,182989186,182994887,182995838,183002043,183002269,183003030,183003325,183023916,183038472	0.944444
gastrocnemius_medialis_male_adult_37_years	chr8	32927976	32927977	32927976	+	RAMPAGE_only	17	18	22	0.766457	3.879664	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	1.000000
gastrocnemius_medialis_male_adult_37_years	chr11	126207586	126207609	126207586	-	RAMPAGE_only	13	14	28	0.975490	3.704349	chr11	126207561	126207848	SINE|Alu|AluSz	+	chr11	126203321	126206512	RPUSD4|ENST00000530903.1	-	126203321,126204230,126205467,126205687	126203657,126204328,126205612,126206512	0.928571
gastrocnemius_medialis_male_adult_37_years	chr4	48012907	48012945	48012944	-	High_confidence	2	2	9	0.313550	3.169925	chr4	48012591	48013262	LTR|ERV1|MER4-int	-	chr4	47935976	48012944	CNGA1|NM_000087.3	-	47935976,47940762,47942040,47943180,47943370,47949832,47951352,47952582,47981392,48010793,48012888	47937829,47940869,47942148,47943288,47943412,47949895,47951469,47952703,47981500,48010893,48012944	0.888889
gastrocnemius_medialis_male_adult_37_years	chr10	58360850	58360869	58360850	+	RAMPAGE_only	2	2	7	0.243873	2.584963	chr10	58360639	58360936	SINE|Alu|AluJo	+	chr10	58364455	58369043	UBE2D1|ENST00000473824.1	+	58364455,58367922,58368719	58364876,58368016,58369043	0.857143
gastrocnemius_medialis_male_adult_37_years	chr15	50766169	50766270	50766169	-	High_confidence	28	31	141	4.912291	5.907475	chr15	50766003	50766223	LINE|L2|L2a	+	chr15	50702265	50765808	SPPL2A|ENST00000261854.9	-	50702265,50719939,50722123,50725220,50726320,50730964,50732602,50736100,50736643,50739679,50747494,50748112,50748687,50749635,50765467	50707874,50720100,50722201,50725323,50726377,50731039,50732684,50736202,50736740,50739828,50747628,50748202,50748870,50749746,50765808	0.914894
gastrocnemius_medialis_male_adult_37_years	chr14	57274842	57274859	57274842	+	RAMPAGE_only	2	2	7	0.243873	2.584963	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.714286
gastrocnemius_medialis_male_adult_37_years	chr20	44498926	44499002	44498948	-	RAMPAGE_only	5	5	40	1.393558	5.071928	chr20	44498888	44499217	LINE|L2|L2b	+	chr20	44497430	44522109	SERINC3|ENST00000342374.4	-	44497430,44501072,44503814,44504800,44506826,44509890,44511288,44512800,44513878,44521912	44500434,44501300,44503995,44504891,44506996,44510028,44511368,44512994,44514040,44522109	1.000000
gastrocnemius_medialis_male_adult_37_years	chr20	33812305	33812326	33812325	-	High_confidence	23	24	63	2.194853	5.060230	chr20	33812158	33812326	SINE|MIR|MIR3	+	chr20	33787433	33812310	STRG.73134.1	-	33787433,33795513,33797917,33812062	33787777,33795616,33797995,33812310	0.698413
gastrocnemius_medialis_male_adult_37_years	chr19	47779747	47779772	47779771	+	High_confidence	4	4	12	0.418067	2.584963	chr19	47779522	47779824	SINE|Alu|AluJo	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	1.000000
gastrocnemius_medialis_male_adult_37_years	chr2	36513740	36513751	36513740	+	RAMPAGE_only	4	4	11	0.383228	2.921928	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36356226	36551135	CRIM1|NM_016441.2	+	36356226,36396613,36441257,36442614,36464533,36476888,36479496,36499218,36509982,36512272,36513555,36517326,36522091,36537351,36544375,36546983,36548524	36356623,36396787,36441500,36442735,36464655,36477071,36479694,36499347,36510139,36512394,36513765,36517542,36522313,36537546,36544498,36547171,36551135	0.545455
gastrocnemius_medialis_male_adult_37_years	chr2	27978248	27978252	27978251	+	RAMPAGE_only	20	22	30	1.045168	4.582119	chr2	27978041	27978454	LTR|ERVL-MaLR|MSTB	+	chr2	27894619	28025488	BABAM2|ENST00000604932.1	+	27894619,27929831,27987992,28025225	27894684,27929908,27988087,28025488	0.533333
gastrocnemius_medialis_male_adult_37_years	chr6	130978873	130978881	130978880	-	High_confidence	3	3	6	0.209034	2.584963	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.833333
gastrocnemius_medialis_male_adult_37_years	chr1	38022217	38022220	38022219	+	RAMPAGE_only	5	8	12	0.418067	2.751629	chr1	38022198	38022365	SINE|MIR|MIR3	+	chr1	38016582	38023801	UTP11|ENST00000488453.1	+	38016582,38018463,38019058,38019252,38022698,38023544	38017770,38018577,38019152,38019383,38022809,38023801	1.000000
gastrocnemius_medialis_male_adult_37_years	chr2	26126455	26126512	26126455	+	RAMPAGE_only	573	597	1455	50.690659	5.943442	chr2	26126295	26126597	SINE|Alu|AluSz6	+	chr2	26098529	26135068	RAB10|ENST00000473035.1	+	26098529,26098661,26109767,26127143,26127849,26134937	26098577,26098722,26109906,26127233,26127951,26135068	0.796564
gastrocnemius_medialis_male_adult_37_years	chr11	65430331	65431269	65430606	+	RAMPAGE_only	60	65	2089	72.778548	7.254492	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998564
gastrocnemius_medialis_male_adult_37_years	chr3	33838228	33838257	33838256	+	RAMPAGE_only	4	5	9	0.313550	2.750000	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.666667
gastrocnemius_medialis_male_adult_37_years	chr17	69248645	69248886	69248847	-	High_confidence	12	14	210	7.316178	5.468915	chr17	69248697	69249025	SINE|Alu|AluJb	-	chr17	69247375	69249141	ABCA5|ENST00000586601.1	-	69247375,69248261	69247644,69249141	0.976190
gastrocnemius_medialis_male_adult_37_years	chr11	125895226	125895243	125895226	-	RAMPAGE_only	5	5	10	0.348389	2.947703	chr11	125895047	125895200	SINE|Alu|AluSc8	-	chr11	125893484	125896330	PUS3|ENST00000530811.5	-	125893484,125895223,125895906	125894286,125895789,125896330	0.800000
gastrocnemius_medialis_male_adult_37_years	chr10	95273881	95273882	95273881	-	High_confidence	11	11	13	0.452906	3.022055	chr10	95273549	95273887	LINE|RTE-X|L4_C_Mam	+	chr10	95263875	95273406	PDLIM1|ENST00000493949.1	-	95263875,95268777,95271632,95273036	95264063,95268862,95271784,95273406	0.846154
gastrocnemius_medialis_male_adult_37_years	chr10	80195810	80195813	80195810	-	RAMPAGE_only	7	8	14	0.487745	3.807355	chr10	80195647	80195982	LTR|ERVL-MaLR|THE1B	-	chr10	80155587	80201667	STRG.46229.3	-	80155587,80157640,80157966,80159099,80161934,80163348,80163533,80164052,80166083,80166889,80167225,80168968,80170799,80172806,80176106,80201258	80155912,80157763,80158025,80159195,80162028,80163405,80163613,80164143,80166197,80166984,80167313,80169358,80170915,80172869,80176155,80201667	1.000000
gastrocnemius_medialis_male_adult_37_years	chr3	152395930	152395933	152395932	+	RAMPAGE_only	22	44	51	1.776786	3.169401	chr3	152395923	152396404	DNA|hAT-Charlie|MER1A	+	chr3	152300197	152459302	MBNL1|ENST00000464596.5	+	152300197,152414940,152432716,152445281,152447619,152459270	152300367,152415111,152432920,152445539,152447773,152459302	0.980392
gastrocnemius_medialis_male_adult_37_years	chr1	63547937	63548004	63547937	+	High_confidence	57	66	133	4.633579	5.798451	chr1	63547557	63548048	LTR|ERVL-MaLR|MLT1H	-	chr1	63548008	63571128	EFCAB7|ENST00000460678.6	+	63548008,63551047,63551724,63557112,63561708,63568309,63571020	63548350,63551090,63551834,63557247,63561857,63568519,63571128	0.879699
gastrocnemius_medialis_male_adult_37_years	chr7	134549094	134549165	134549109	+	High_confidence	46	48	326	11.357495	6.628209	chr7	134549070	134551552	LTR|ERV1|HERVS71-int	+	chr7	134549096	134579840	AKR1B15|NM_001080538.2	+	134549096,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579840	0.803681
gastrocnemius_medialis_male_adult_37_years	chr12	58781708	58781719	58781718	-	High_confidence	41	45	92	3.205183	5.855889	chr12	58781360	58781953	LTR|ERVL|MER70B	-	chr12	58781126	58781708	STRG.53935.1	-	58781126	58781708	0.608696
gastrocnemius_medialis_male_adult_37_years	chr2	218287266	218287283	218287279	-	High_confidence	35	36	113	3.936800	5.596822	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.867257
gastrocnemius_medialis_male_adult_37_years	chr19	41545191	41545192	41545191	+	High_confidence	4	6	6	0.209034	2.584963	chr19	41544577	41545607	LTR|ERVK|LTR5A	+	chr19	41545191	41555251	AC243960.1|ENST00000595649.5	+	41545191,41549519,41551179,41551752,41553705,41554950,41555209	41545196,41549552,41551494,41551828,41553746,41555099,41555251	0.500000
gastrocnemius_medialis_male_adult_37_years	chr5	79762834	79762870	79762862	+	RAMPAGE_only	3	4	13	0.452906	3.022055	chr5	79762757	79762932	LINE|L1|L1ME4b	+	chr5	79738141	79800240	CMYA5|ENST00000506603.5	+	79738141,79743826,79745221,79747090,79752675,79758752,79761810,79788970,79790969,79793436,79799369	79739403,79743922,79745455,79747113,79752794,79758902,79763209,79789104,79791069,79793610,79800240	0.923077
gastrocnemius_medialis_male_adult_37_years	chr15	99098336	99098363	99098356	+	High_confidence	4	4	19	0.661940	4.247928	chr15	99098258	99098383	SINE|MIR|MIRb	-	chr15	99098216	99135593	SYNM|ENST00000560674.5	+	99098216,99113590,99126721,99129366,99132749	99098637,99113715,99126792,99131813,99135593	1.000000
gastrocnemius_medialis_male_adult_37_years	chr1	26060502	26060550	26060549	-	RAMPAGE_only	5	6	19	0.661940	3.947703	chr1	26060528	26060629	SINE|MIR|MIR3	-	chr1	26051303	26067633	TRIM63|ENST00000374272.3	-	26051303,26053892,26057202,26057627,26058389,26060265,26061165,26066267,26067335	26051883,26053964,26057327,26057650,26058623,26060361,26061334,26066440,26067633	0.526316
gastrocnemius_medialis_male_adult_37_years	chr2	200889135	200889157	200889156	-	High_confidence	8	8	24	0.836135	4.436605	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889154	PPIL3|ENST00000392283.8	-	200870955,200876918,200881420,200882341,200885697,200887612,200888955	200871521,200877037,200881488,200882435,200885772,200887685,200889154	0.958333
gastrocnemius_medialis_male_adult_37_years	chr6	33748484	33748493	33748484	-	RAMPAGE_only	2	2	8	0.278712	2.750000	chr6	33748484	33748667	SINE|Alu|AluJb	+	chr6	33721665	33746985	IP6K3|NM_001142883.1	-	33721665,33725440,33726730,33728086,33735277,33739132,33746757	33723187,33725616,33726906,33728300,33735655,33739261,33746985	1.000000
gastrocnemius_medialis_male_adult_37_years	chr12	45292796	45292847	45292825	+	High_confidence	7	8	29	1.010329	4.556088	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.931034
gastrocnemius_medialis_male_adult_37_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	13	13	13	0.452906	3.180833	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.692308
gastrocnemius_medialis_male_adult_37_years	chr2	201168333	201168363	201168333	+	RAMPAGE_only	5	5	19	0.661940	3.947703	chr2	201168284	201170266	LINE|L1|L1P3	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	0.947368
gastrocnemius_medialis_male_adult_37_years	chr22	35623243	35623259	35623243	-	High_confidence	4	4	9	0.313550	2.947703	chr22	35623096	35623262	SINE|MIR|MIR	-	chr22	35606763	35623354	MB|ENST00000359787.5	-	35606763,35610883,35617162,35623190	35607443,35611106,35617265,35623354	1.000000
gastrocnemius_medialis_male_adult_37_years	chr16	2757853	2757884	2757853	+	High_confidence	2	2	11	0.383228	3.121928	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2761707	STRG.64340.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746,2760300,2761560	2757945,2758547,2759047,2759172,2759402,2759661,2760008,2760499,2761707	0.909091
gastrocnemius_medialis_male_adult_37_years	chr9	83806303	83806329	83806328	-	RAMPAGE_only	3	3	13	0.452906	3.584963	chr9	83806166	83806294	LINE|L2|L2c	-	chr9	83739503	83817632	STRG.42250.1	-	83739503,83741951,83742529,83748308,83753257,83768817,83780381,83784714,83788600,83799184,83806301,83815925,83816995,83817516	83739744,83742029,83742600,83748372,83753359,83768970,83780404,83784838,83788678,83799328,83806560,83816016,83817127,83817632	0.923077
gastrocnemius_medialis_male_adult_37_years	chr15	25032814	25032849	25032848	+	High_confidence	7	7	15	0.522584	3.456565	chr15	25032433	25032891	LINE|L1|L1MEf	-	chr15	25031872	25036490	PWAR6|ENST00000552334.1	+	25031872	25036490	1.000000
gastrocnemius_medialis_male_adult_37_years	chr7	7566500	7566534	7566514	-	High_confidence	185	208	580	20.206586	6.836861	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.756897
gastrocnemius_medialis_male_adult_37_years	chr12	49013477	49013523	49013477	-	RAMPAGE_only	11	14	36	1.254202	4.764858	chr12	49013243	49013543	SINE|Alu|AluJb	-	chr12	49004571	49018415	PRKAG1|ENST00000552463.5	-	49004571,49004963,49005119,49005305,49005461,49005742,49013061,49016606,49018333	49004633,49005018,49005165,49005364,49005543,49005852,49013110,49016839,49018415	0.500000
gastrocnemius_medialis_male_adult_37_years	chr14	50756643	50756662	50756643	-	RAMPAGE_only	3	3	9	0.313550	2.750000	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.777778
gastrocnemius_medialis_male_adult_37_years	chr8	17935185	17935211	17935185	+	High_confidence	4	4	19	0.661940	3.572431	chr8	17934728	17935264	LTR|Gypsy?|LTR85a	-	chr8	17935130	17953123	STRG.37573.12	+	17935130,17935588,17937133,17938739,17939690,17940041,17947185,17950614,17952969	17935317,17935706,17937379,17939009,17939861,17940158,17947363,17950724,17953123	0.947368
gastrocnemius_medialis_male_adult_37_years	chr10	88440655	88440662	88440661	-	RAMPAGE_only	12	12	23	0.801296	4.106603	chr10	88440409	88440716	LTR|ERVL-MaLR|MLT1L	-	chr10	88284958	88583213	RNLS|ENST00000331772.8	-	88284958,88314465,88362551,88572902,88581566,88582201,88583072	88285506,88314641,88362725,88573061,88581709,88582307,88583213	0.565217
gastrocnemius_medialis_male_adult_37_years	chr9	92536601	92536602	92536601	-	High_confidence	7	8	8	0.278712	2.807355	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.750000
gastrocnemius_medialis_male_adult_37_years	chr14	38948236	38948252	38948236	-	High_confidence	5	5	13	0.452906	3.418296	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38838888	38948237	LINC00639|ENST00000556116.1	-	38838888,38941519,38948177	38839204,38941695,38948237	0.846154
gastrocnemius_medialis_male_adult_37_years	chr7	134548940	134548941	134548940	+	High_confidence	17	17	19	0.661940	3.826875	chr7	134548478	134549049	LTR|ERV1|LTR6A	+	chr7	134549096	134579840	AKR1B15|NM_001080538.2	+	134549096,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579840	0.894737
gastrocnemius_medialis_male_adult_37_years	chr1	24092946	24092967	24092950	-	RAMPAGE_only	4	5	21	0.731618	3.880180	chr1	24092769	24092942	SINE|MIR|MIR3	-	chr1	24081548	24108439	MYOM3|ENST00000475306.1	-	24081548,24086643,24089537,24090064,24090796,24092173,24092946,24094852,24095441,24097922,24099679,24105919,24107072,24107992	24084639,24086827,24089665,24090118,24090996,24092315,24093108,24094990,24095486,24098011,24099775,24106077,24107232,24108439	1.000000
gastrocnemius_medialis_male_adult_37_years	chr2	156435035	156435058	156435049	+	High_confidence	6	6	15	0.522584	3.640224	chr2	156434919	156435050	DNA|hAT-Charlie|MER5B	+	chr2	156435289	156510849	GPD2|ENST00000415049.5	+	156435289,156476097,156496043,156510795	156435409,156476207,156496215,156510849	0.866667
gastrocnemius_medialis_male_adult_37_years	chrX	54989693	54989703	54989698	-	RAMPAGE_only	5	6	19	0.661940	4.037401	chrX	54989258	54989750	LINE|L1|L1ME3A	+	chrX	54976199	54994022	STRG.77199.5	-	54976199,54989618	54986289,54994022	0.736842
gastrocnemius_medialis_male_adult_37_years	chr6	101933012	101933041	101933040	+	High_confidence	6	6	23	0.801296	4.523562	chr6	101932837	101933651	LTR|ERVL-MaLR|MLT1H-int	-	chr6	101932922	102070261	STRG.30617.2	+	101932922,102035340,102055329,102068346	101933286,102035566,102055580,102070261	0.956522
gastrocnemius_medialis_male_adult_37_years	chr2	219425186	219425187	219425186	+	RAMPAGE_only	42	42	42	1.463236	4.909825	chr2	219424901	219425196	SINE|Alu|AluSg	-	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	1.000000
gastrocnemius_medialis_male_adult_37_years	chr17	39187484	39187552	39187484	-	RAMPAGE_only	4	5	21	0.731618	3.975418	chr17	39187272	39187460	SINE|MIR|MIRb	-	chr17	39177416	39193493	STRG.67478.3	-	39177416,39177983,39183712,39184030,39184324,39184783,39185949,39186495,39186792,39187478,39191473,39193448	39177535,39178079,39183864,39184140,39184383,39184864,39186104,39186572,39186929,39187601,39191593,39193493	1.000000
gastrocnemius_medialis_male_adult_37_years	chr9	121281833	121281851	121281844	+	High_confidence	2	2	8	0.278712	2.521641	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121282096	121282573	STRG.43711.11	+	121282096	121282573	0.750000
gastrocnemius_medialis_male_adult_37_years	chr20	20088461	20088469	20088461	-	High_confidence	13	13	29	1.010329	4.504706	chr20	20088284	20088660	LTR|ERVL-MaLR|THE1C	-	chr20	20078729	20089233	STRG.72916.8	-	20078729	20089233	0.896552
gastrocnemius_medialis_male_adult_37_years	chr5	79762362	79762587	79762362	+	RAMPAGE_only	5	5	98	3.414216	5.196407	chr5	79762021	79762418	LINE|L2|L2c	-	chr5	79738141	79800240	CMYA5|ENST00000506603.5	+	79738141,79743826,79745221,79747090,79752675,79758752,79761810,79788970,79790969,79793436,79799369	79739403,79743922,79745455,79747113,79752794,79758902,79763209,79789104,79791069,79793610,79800240	1.000000
gastrocnemius_medialis_male_adult_37_years	chr17	29137043	29137069	29137068	-	RAMPAGE_only	3	3	9	0.313550	2.947703	chr17	29136992	29137161	SINE|MIR|MIR	-	chr17	29121924	29140383	MYO18A|ENST00000533420.3	-	29121924,29122165,29124652,29125892,29127851,29131382,29133793,29140339	29121957,29122253,29124688,29125967,29128544,29131435,29133939,29140383	0.888889
gastrocnemius_medialis_male_adult_37_years	chr6	137218774	137218822	137218821	-	High_confidence	3	3	9	0.313550	2.641604	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	1.000000
gastrocnemius_medialis_male_adult_37_years	chr18	9255841	9255941	9255876	+	RAMPAGE_only	4	5	44	1.532913	5.023037	chr18	9255910	9256385	LINE|L1|HAL1b	+	chr18	9137562	9285985	ANKRD12|NM_001204056.1	+	9137562,9182381,9195550,9208656,9211583,9216757,9221851,9254210,9263789,9275523,9279548,9280940	9137873,9182519,9195698,9208803,9211784,9216900,9221999,9258931,9263888,9275667,9279644,9285985	0.954545
gastrocnemius_medialis_male_adult_37_years	chr20	45825369	45825406	45825405	-	RAMPAGE_only	9	10	25	0.870974	3.490602	chr20	45825287	45825591	SINE|Alu|AluSx	-	chr20	45823213	45827314	TNNC2|NM_003279.2	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827314	0.960000
gastrocnemius_medialis_male_adult_37_years	chr3	54889135	54889158	54889157	+	High_confidence	9	9	17	0.592262	3.969816	chr3	54888995	54889708	LINE|L2|L2b	-	chr3	54889170	55074203	STRG.15413.5	+	54889170,54891354,54896748,54899787,54968449,54969799,54984607,54987682,55004762,55007789,55009387,55018205,55073444,55073776,55074113	54889341,54891450,54896870,54899868,54968511,54969844,54984670,54987753,55004838,55007842,55009443,55018317,55073557,55073859,55074203	0.882353
gastrocnemius_medialis_male_adult_37_years	chr2	201168420	201169070	201168515	+	RAMPAGE_only	13	14	416	14.493000	6.966240	chr2	201168284	201170266	LINE|L1|L1P3	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	1.000000
gastrocnemius_medialis_male_adult_37_years	chr17	69314935	69314997	69314974	-	High_confidence	3	3	23	0.801296	4.277613	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	0.913043
gastrocnemius_medialis_male_adult_37_years	chr8	41661999	41662008	41661999	-	RAMPAGE_only	3	3	6	0.209034	2.584963	chr8	41661976	41662267	SINE|Alu|AluSx1	+	chr8	41653224	41665207	STRG.38169.3	-	41653224,41661429,41661800,41663658,41664804	41655753,41661564,41661941,41663742,41665207	0.666667
gastrocnemius_medialis_male_adult_37_years	chr2	157751418	157751440	157751439	-	RAMPAGE_only	8	8	15	0.522584	3.323231	chr2	157750930	157752572	LINE|L1|L1PB1	+	chr2	157736448	157806996	ACVR1|ENST00000409283.6	-	157736448,157738439,157760879,157765920,157770367,157774087,157778130,157780336,157799426,157806736	157737665,157738570,157761077,157766196,157770514,157774187,157778342,157780600,157799500,157806996	0.933333
gastrocnemius_medialis_male_adult_37_years	chr11	114282117	114282158	114282117	+	RAMPAGE_only	4	4	19	0.661940	3.836592	chr11	114282028	114282241	SINE|Alu|AluJr	+	chr11	114059724	114312515	STRG.51344.1	+	114059724,114063210,114156336,114186951,114242166,114247197,114250325,114261363,114293671,114297950,114312044	114059882,114064568,114156434,114187038,114242337,114247365,114261226,114293438,114296710,114298158,114312515	0.947368
gastrocnemius_medialis_male_adult_37_years	chr12	55710131	55710132	55710131	+	RAMPAGE_only	4	5	7	0.243873	2.521641	chr12	55710078	55710380	SINE|Alu|AluSx1	+	chr12	55716033	55719707	BLOC1S1|NR_037655.1	+	55716033,55719090,55719498	55716196,55719223,55719707	0.714286
gastrocnemius_medialis_male_adult_37_years	chr6	41732665	41732693	41732692	-	RAMPAGE_only	3	4	9	0.313550	2.750000	chr6	41732628	41732733	SINE|MIR|MIR	-	chr6	41686528	41733853	TFEB|ENST00000394283.5	-	41686528,41687752,41687907,41689730,41690662,41691000,41732648	41687169,41687809,41688028,41689811,41690917,41691235,41733853	0.888889
gastrocnemius_medialis_male_adult_37_years	chr1	1655376	1655410	1655409	-	RAMPAGE_only	10	11	33	1.149685	4.696132	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	0.939394
gastrocnemius_medialis_male_adult_37_years	chr3	9986881	9986899	9986887	+	High_confidence	3	3	12	0.418067	3.095795	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.750000
gastrocnemius_medialis_male_adult_37_years	chr9	128921399	128921413	128921399	+	High_confidence	21	24	51	1.776786	4.928367	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.960784
gastrocnemius_medialis_male_adult_37_years	chr1	231501289	231501292	231501291	-	RAMPAGE_only	40	61	88	3.065827	5.946711	chr1	231501104	231501442	LTR|ERVL-MaLR|MLT1A0	-	chr1	231461162	231462807	STRG.6275.5	-	231461162	231462807	0.590909
gastrocnemius_medialis_male_adult_37_years	chr16	11741963	11741976	11741963	+	High_confidence	9	10	29	1.010329	3.948859	chr16	11741751	11742041	SINE|Alu|AluSx	+	chr16	11741909	11744506	AC007613.1|ENST00000572811.1	+	11741909	11744506	0.965517
gastrocnemius_medialis_male_adult_37_years	chrX	5726324	5726325	5726324	-	High_confidence	81	101	110	3.832284	5.142495	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.800000
gastrocnemius_medialis_male_adult_37_years	chrX	10160447	10160468	10160447	+	RAMPAGE_only	6	6	13	0.452906	3.418296	chrX	10160467	10160623	SINE|MIR|MIRb	+	chrX	10158447	10233697	CLCN4|ENST00000380829.5	+	10158447,10185021,10187514,10194910,10197938,10206357,10206695,10208044,10208274,10212466,10213680,10220660,10233493	10158551,10185176,10187614,10195098,10198061,10206564,10206776,10208181,10208590,10212653,10214079,10220877,10233697	0.538462
gastrocnemius_medialis_male_adult_37_years	chr2	38515655	38515666	38515655	-	High_confidence	9	10	21	0.731618	3.439936	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38515201	38515776	STRG.7885.1	-	38515201	38515776	0.619048
gastrocnemius_medialis_male_adult_37_years	chr16	86727330	86727347	86727346	+	High_confidence	81	86	130	4.529062	6.262395	chr16	86727319	86727414	SINE|Alu|AluSx3	+	chr16	86727346	86738593	LINC02188|ENST00000649094.1	+	86727346,86727867,86734825,86737409	86727536,86727967,86734909,86738593	0.569231
gastrocnemius_medialis_male_adult_37_years	chr7	123846781	123846810	123846790	+	High_confidence	9	14	34	1.184524	4.393062	chr7	123845506	123847173	LINE|L1|L1PBa1	-	chr7	123846793	123877185	STRG.36407.1	+	123846793,123848088,123868222,123874760,123876753	123846876,123848158,123869227,123874850,123877185	0.764706
gastrocnemius_medialis_male_adult_37_years	chr12	10702260	10702261	10702260	-	High_confidence	21	23	26	0.905812	3.907268	chr12	10702238	10702535	SINE|Alu|AluSz	+	chr12	10699316	10702475	YBX3|ENST00000540975.5	-	10699316,10701253,10701959,10702411	10699654,10701353,10702134,10702475	0.923077
gastrocnemius_medialis_male_adult_37_years	chr2	201169604	201169649	201169604	+	RAMPAGE_only	8	8	26	0.905812	4.563856	chr2	201168284	201170266	LINE|L1|L1P3	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	0.961538
gastrocnemius_medialis_male_adult_37_years	chr17	39183719	39183735	39183719	-	RAMPAGE_only	2	2	8	0.278712	2.807355	chr17	39183514	39183691	SINE|MIR|MIRb	-	chr17	39173800	39193883	CACNB1|ENST00000539338.6	-	39173800,39177349,39177983,39183712,39184030,39184324,39184783,39185130,39186495,39186792,39187478,39191473	39175657,39177535,39178079,39183864,39184140,39184383,39184864,39185150,39186572,39186929,39187601,39193883	0.500000
gastrocnemius_medialis_male_adult_37_years	chr7	102822458	102822461	102822458	-	RAMPAGE_only	2	2	7	0.243873	2.584963	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.571429
gastrocnemius_medialis_male_adult_37_years	chr1	12572737	12572758	12572757	-	RAMPAGE_only	2	2	7	0.243873	2.584963	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.857143
gastrocnemius_medialis_male_adult_37_years	chr17	29643374	29643378	29643377	-	RAMPAGE_only	75	102	165	5.748425	4.941674	chr17	29643278	29643403	LTR|ERVL-MaLR|MLT1L	+	chr17	29625937	29761390	STRG.67195.4	-	29625937,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677741,29684684,29695523,29703062,29761390	0.872727
gastrocnemius_medialis_male_adult_37_years	chrX	48683362	48683363	48683362	+	High_confidence	8	11	11	0.383228	3.277613	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
gastrocnemius_medialis_male_adult_37_years	chr4	123894758	123894791	123894758	+	RAMPAGE_only	3	3	7	0.243873	2.807355	chr4	123894654	123894827	SINE|Alu|AluYc	-	chr4	123652784	123930363	LINC01091|NR_027105.2	+	123652784,123661752,123829094,123925183,123930247	123652902,123661833,123829187,123925337,123930363	0.571429
gastrocnemius_medialis_male_adult_37_years	chr1	1655445	1655457	1655445	-	RAMPAGE_only	3	3	14	0.487745	3.546594	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.571429
gastrocnemius_medialis_male_adult_37_years	chr17	18021412	18021422	18021421	-	High_confidence	9	9	15	0.522584	3.323231	chr17	18021395	18021545	LTR|ERVL-MaLR|MLT1K	+	chr17	18018261	18021264	ATPAF2|ENST00000467560.5	-	18018261,18021122	18018686,18021264	0.666667
gastrocnemius_medialis_male_adult_37_years	chrX	11351636	11351676	11351675	-	High_confidence	129	134	217	7.560050	6.761299	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11137543	11351675	STRG.76542.3	-	11137543,11142232,11143979,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11351385	11139530,11142313,11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11351675	0.571429
gastrocnemius_medialis_male_adult_37_years	chr20	20088529	20088626	20088597	-	High_confidence	29	39	124	4.320029	5.819396	chr20	20088284	20088660	LTR|ERVL-MaLR|THE1C	-	chr20	20078729	20089233	STRG.72916.8	-	20078729	20089233	0.967742
gastrocnemius_medialis_male_adult_37_years	chr2	75641804	75641811	75641804	+	RAMPAGE_only	14	15	23	0.801296	4.061482	chr2	75641589	75641934	LTR|ERVL-MaLR|MLT1F2	-	chr2	75646782	75657860	MRPL19|ENST00000393909.6	+	75646782,75647101,75652141,75652522,75654735,75655063	75646910,75647219,75652260,75652657,75654917,75657860	0.869565
gastrocnemius_medialis_male_adult_37_years	chr2	201163955	201163956	201163955	+	RAMPAGE_only	7	7	9	0.313550	2.750000	chr2	201163983	201164293	SINE|Alu|AluSx1	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	0.888889
gastrocnemius_medialis_male_adult_37_years	chr18	9126606	9126607	9126606	+	RAMPAGE_only	4	4	7	0.243873	2.807355	chr18	9126653	9126774	SINE|Alu|AluJo	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	0.714286
gastrocnemius_medialis_male_adult_37_years	chr6	123604200	123604225	123604224	-	RAMPAGE_only	3	3	7	0.243873	2.807355	chr6	123604079	123604278	LINE|L2|L2c	-	chr6	123464249	123636909	TRDN|ENST00000628709.2	-	123464249,123503718,123512302,123516140,123530505,123547339,123548453,123570922,123636753	123464983,123503901,123512362,123516206,123530565,123547372,123548612,123571132,123636909	0.857143
gastrocnemius_medialis_male_adult_37_years	chr7	134527596	134527597	134527596	+	High_confidence	15	15	15	0.522584	3.456565	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.933333
gastrocnemius_medialis_male_adult_37_years	chr11	65181222	65181255	65181222	+	High_confidence	3	3	9	0.313550	2.500000	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.888889
gastrocnemius_medialis_male_adult_37_years	chr12	52087329	52087359	52087329	+	RAMPAGE_only	2	2	10	0.348389	2.646439	chr12	52087220	52087468	LINE|L2|L2	+	chr12	52084774	52107550	OR7E47P|ENST00000646320.1	+	52084774,52107386	52084840,52107550	1.000000
gastrocnemius_medialis_male_adult_37_years	chr9	128921923	128921961	128921923	+	High_confidence	4	4	18	0.627101	3.947703	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.888889
gastrocnemius_medialis_male_adult_37_years	chr20	25274299	25274316	25274299	+	RAMPAGE_only	36	39	63	2.194853	4.794740	chr20	25274074	25274339	LINE|L1|L1MB7	-	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	0.888889
gastrocnemius_medialis_male_adult_37_years	chr16	30373014	30373015	30373014	+	High_confidence	9	14	14	0.487745	3.664498	chr16	30372675	30373134	LINE|L2|L2b	+	chr16	30372317	30377991	MYLPF|NM_001324458.1	+	30372317,30372877,30374821,30375819,30376144,30376422,30376619,30377653,30377795	30372360,30373016,30374860,30375912,30376220,30376527,30376698,30377702,30377991	1.000000
gastrocnemius_medialis_male_adult_37_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	12	12	12	0.418067	3.418296	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
gastrocnemius_medialis_male_adult_37_years	chr9	123236969	123236971	123236970	-	RAMPAGE_only	13	16	23	0.801296	3.697846	chr9	123236851	123237154	SINE|Alu|AluSz	+	chr9	123179006	123213908	STRBP|ENST00000479114.2	-	123179006,123184131,123212584,123213588	123179227,123184298,123212708,123213908	0.869565
gastrocnemius_medialis_male_adult_37_years	chr2	85432957	85432971	85432957	+	RAMPAGE_only	2	2	8	0.278712	2.807355	chr2	85432840	85432984	DNA|TcMar-Mariner|MARNA	-	chr2	85434065	85437027	SH2D6|ENST00000477170.5	+	85434065,85434339,85435064,85435412,85435665,85436465,85436836	85434111,85434370,85435123,85435496,85435824,85436594,85437027	0.625000
gastrocnemius_medialis_male_adult_37_years	chr10	72355145	72355169	72355145	-	High_confidence	8	8	18	0.627101	4.058814	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
gastrocnemius_medialis_male_adult_37_years	chr19	38566912	38566976	38566975	+	High_confidence	5	5	19	0.661940	3.826875	chr19	38567025	38567143	LINE|L2|L2b	+	chr19	38566926	38572244	RYR1|ENST00000593677.1	+	38566926,38567772,38572018	38566987,38567917,38572244	0.631579
gastrocnemius_medialis_male_adult_37_years	chr19	48868595	48868631	48868613	-	High_confidence	141	181	781	27.209213	7.324416	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.992318
gastrocnemius_medialis_male_adult_37_years	chr6	15926574	15926583	15926576	+	RAMPAGE_only	14	17	26	0.905812	4.220176	chr6	15926296	15926914	LINE|L2|L2a	-	chr6	15934781	15935315	ARPC3P5|ENST00000448802.1	+	15934781	15935315	0.692308
gastrocnemius_medialis_male_adult_37_years	chr20	20076426	20076435	20076434	-	RAMPAGE_only	670	833	1521	52.990029	5.050803	chr20	20076072	20076574	LTR|ERVL-MaLR|MLT1G1	+	chr20	20073214	20078653	STRG.72931.1	-	20073214	20078653	0.988166
gastrocnemius_medialis_male_adult_37_years	chr4	184768320	184768399	184768328	-	RAMPAGE_only	22	23	287	9.998776	6.655026	chr4	184768056	184768306	SINE|MIR|MIRc	-	chr4	184755600	184766702	ACSL1|ENST00000503407.5	-	184755600,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621	184757265,184757706,184757920,184760500,184762493,184763255,184764925,184765986,184766702	0.773519
gastrocnemius_medialis_male_adult_37_years	chr11	65434402	65434864	65434799	+	RAMPAGE_only	38	39	673	23.446607	6.981816	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998514
gastrocnemius_medialis_male_adult_37_years	chr5	91314111	91314131	91314111	-	High_confidence	3	3	7	0.243873	2.521641	chr5	91313947	91314128	LINE|L2|L2c	+	chr5	91302730	91314298	LUCAT1|ENST00000648636.1	-	91302730,91310855,91313637,91314079	91303161,91311032,91313777,91314298	0.571429
gastrocnemius_medialis_male_adult_37_years	chr1	64945838	64945885	64945838	-	RAMPAGE_only	10	10	27	0.940651	4.384517	chr1	64945727	64946036	SINE|Alu|AluSx1	-	chr1	64833228	64966504	JAK1|ENST00000342505.4	-	64833228,64835395,64836097,64837931,64838464,64839602,64841244,64841450,64844063,64844753,64845512,64846648,64847531,64850803,64855508,64857655,64860104,64864786,64866865,64869310,64873369,64879024,64883276,64886258,64966332	64834657,64835506,64836215,64838104,64838589,64839795,64841339,64841601,64844215,64844889,64845640,64846736,64847675,64850910,64855698,64857779,64860262,64864972,64867208,64869474,64873523,64879148,64883475,64886341,64966504	0.555556
gastrocnemius_medialis_male_adult_37_years	chr16	20736628	20736654	20736628	-	RAMPAGE_only	4	4	12	0.418067	3.095795	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	0.916667
gastrocnemius_medialis_male_adult_37_years	chr12	53427241	53427250	53427241	+	High_confidence	67	69	118	4.110995	5.216463	chr12	53427040	53427257	LINE|L2|L2a	-	chr12	53427257	53431458	STRG.53681.1	+	53427257,53429452,53431176	53427282,53429625,53431458	0.974576
gastrocnemius_medialis_male_adult_37_years	chr18	7946878	7946898	7946878	+	High_confidence	20	20	63	2.194853	5.040822	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.793651
gastrocnemius_medialis_male_adult_37_years	chr19	18013267	18013283	18013267	+	RAMPAGE_only	2	2	9	0.313550	2.750000	chr19	18013258	18013441	LINE|L2|L2c	-	chr19	18008169	18014100	ARRDC2|ENST00000593460.1	+	18008169,18012912	18010729,18014100	0.777778
gastrocnemius_medialis_male_adult_37_years	chr11	66372460	66372480	66372460	-	High_confidence	9	9	16	0.557423	3.875000	chr11	66372296	66372448	DNA|hAT-Tip100|ORSL-2b	-	chr11	66362520	66372476	SLC29A2|NM_001300868.1	-	66362520,66364224,66365935,66366125,66366430,66367463,66367771,66368536,66369059,66369368,66371243,66371562,66372009,66372357	66363547,66364424,66366021,66366231,66366564,66367548,66367869,66368671,66369199,66369532,66371325,66371646,66372265,66372476	0.875000
gastrocnemius_medialis_male_adult_37_years	chr11	65433968	65434071	65434010	+	RAMPAGE_only	8	8	60	2.090336	5.002708	chr11	65433870	65434194	LINE|L1|L1ME3F	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.983333
gastrocnemius_medialis_male_adult_37_years	chr2	214465962	214466000	214465995	+	High_confidence	7	7	25	0.870974	3.199082	chr2	214463762	214466217	LINE|L1|L1M1	-	chr2	214466285	214466790	STRG.12628.1	+	214466285	214466790	0.720000
gastrocnemius_medialis_male_adult_37_years	chr6	147266052	147266056	147266055	+	RAMPAGE_only	9	9	17	0.592262	3.452820	chr6	147265752	147266762	LINE|L2|L2c	-	chr6	147205898	147390554	STRG.32026.3	+	147205898,147235249,147239169,147260614,147262289,147267083,147278080,147291093,147310083,147311454,147313883,147314263,147314595,147315514,147316228,147324958,147327124,147334156,147339178,147339336,147351832,147353322,147359083,147363334,147364000,147373730,147382777,147384713	147206068,147235331,147239270,147260749,147262353,147267167,147278204,147291172,147310238,147311527,147314031,147314331,147314636,147315735,147316407,147325084,147327276,147334222,147339238,147339384,147351895,147353373,147359323,147363704,147364166,147373842,147382998,147390554	0.941176
gastrocnemius_medialis_male_adult_37_years	chr1	31373705	31373706	31373705	-	High_confidence	16	16	17	0.592262	2.983459	chr1	31373523	31373667	SINE|MIR|MIRb	-	chr1	31365252	31373288	FABP3|NM_001320996.1	-	31365252,31367392,31369384,31372941	31365939,31367494,31369590,31373288	0.941176
gastrocnemius_medialis_male_adult_37_years	chr15	34988764	34988785	34988767	-	High_confidence	8	15	34	1.184524	4.366729	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978342	34988784	STRG.61322.2	-	34978342,34987556,34988502	34983490,34987673,34988784	0.941176
gastrocnemius_medialis_male_adult_37_years	chr19	28509033	28509035	28509034	+	High_confidence	22	29	36	1.254202	4.614997	chr19	28508985	28509155	LINE|L2|L2a	-	chr19	28509237	28518728	AC005616.1|ENST00000592931.1	+	28509237,28518300	28509388,28518728	0.805556
gastrocnemius_medialis_male_adult_37_years	chr14	90733408	90733415	90733414	-	RAMPAGE_only	5	7	12	0.418067	3.251629	chr14	90733163	90733377	SINE|MIR|MIRb	-	chr14	90689635	90786237	TTC7B|ENST00000557766.1	-	90689635,90695499,90699157,90730074,90744791,90780737,90786173	90689712,90695578,90699223,90730196,90744922,90780906,90786237	0.833333
gastrocnemius_medialis_male_adult_37_years	chr15	30624357	30624368	30624357	+	High_confidence	3	3	9	0.313550	2.500000	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.555556
gastrocnemius_medialis_male_adult_37_years	chr8	67055220	67055304	67055241	+	RAMPAGE_only	29	35	417	14.527838	6.588311	chr8	67054773	67055502	LINE|L2|L2a	-	chr8	67062425	67093620	CSPP1|ENST00000521919.5	+	67062425,67074242,67076481,67086006,67091802,67093542	67062520,67074351,67076581,67086110,67091883,67093620	0.669065
gastrocnemius_medialis_male_adult_37_years	chr7	107580245	107580267	107580264	+	High_confidence	739	739	3309	115.282056	6.795548	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.955576
gastrocnemius_medialis_male_adult_37_years	chr2	36584049	36584317	36584210	-	High_confidence	109	111	1119	38.984775	5.172762	chr2	36584029	36584427	LTR|ERVL|LTR33	+	chr2	36555682	36584058	FEZ2|ENST00000464964.1	-	36555682,36558437,36578596,36581289,36583352,36584029	36555748,36558513,36578865,36581431,36583469,36584058	0.963360
gastrocnemius_medialis_male_adult_37_years	chr8	119875393	119875418	119875413	+	RAMPAGE_only	9	9	19	0.661940	3.905765	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.842105
gastrocnemius_medialis_male_adult_37_years	chr11	73468822	73468841	73468822	-	High_confidence	2	2	14	0.487745	2.807355	chr11	73468774	73468895	SINE|MIR|MIR3	+	chr11	73430162	73468492	FAM168A|ENST00000432223.2	-	73430162,73468404	73430770,73468492	0.928571
gastrocnemius_medialis_male_adult_37_years	chr2	85694129	85694132	85694131	+	High_confidence	20	27	30	1.045168	4.548394	chr2	85694093	85694142	DNA|hAT|MER53	-	chr2	85694290	85698851	GNLY|NM_012483.3	+	85694290,85694752,85695319,85695957,85697505,85698563	85694470,85694996,85695423,85696056,85697677,85698851	0.900000
gastrocnemius_medialis_male_adult_37_years	chr9	92536649	92536670	92536669	-	High_confidence	4	5	13	0.452906	3.392747	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.923077
gastrocnemius_medialis_male_adult_37_years	chr10	72220310	72220311	72220310	+	RAMPAGE_only	17	17	20	0.696779	4.221928	chr10	72220047	72220353	SINE|Alu|AluSp	+	chr10	72223132	72233829	ANAPC16|ENST00000470481.2	+	72223132,72230365,72233000	72224056,72230440,72233829	1.000000
gastrocnemius_medialis_male_adult_37_years	chr2	231072203	231072255	231072254	+	RAMPAGE_only	5	6	20	0.696779	3.746439	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231066903	231075566	PSMD1|ENST00000444007.1	+	231066903,231070024,231072332,231075510	231067111,231070168,231072415,231075566	0.500000
gastrocnemius_medialis_male_adult_37_years	chr10	79446833	79446869	79446868	-	RAMPAGE_only	8	8	29	1.010329	4.323161	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.965517
gastrocnemius_medialis_male_adult_37_years	chr11	61801958	61801974	61801958	-	RAMPAGE_only	3	3	11	0.383228	3.121928	chr11	61801882	61802044	SINE|Alu|AluSx	-	chr11	61793299	61816889	STRG.49205.6	-	61793299,61800519,61802800,61803031,61803362,61803669,61804684,61806663,61810750,61810973,61812470,61813242,61816554	61800489,61802462,61802926,61803111,61803459,61803767,61804761,61806724,61810879,61811075,61812668,61813353,61816889	0.818182
gastrocnemius_medialis_male_adult_37_years	chr18	21450894	21450944	21450943	-	High_confidence	5	5	29	1.010329	4.664498	chr18	21450793	21450981	LINE|L1|L1ME4c	-	chr18	21363344	21451017	STRG.69386.1	-	21363344,21367633,21380509,21387512,21401114,21401820,21450882	21363699,21367747,21380675,21387587,21401171,21401899,21451017	0.655172
gastrocnemius_medialis_male_adult_37_years	chr8	123395565	123395566	123395565	-	High_confidence	4	4	6	0.209034	2.584963	chr8	123395475	123395613	SINE|MIR|MIR	+	chr8	123320680	123396379	ATAD2|ENST00000519124.5	-	123320680,123322937,123325892,123328189,123333877,123334199,123336372,123337624,123339310,123344883,123346085,123346617,123347091,123348182,123349284,123356388,123357561,123359220,123359576,123361538,123369057,123369820,123370902,123371235,123371669,123372636,123380528,123396182	123321175,123323066,123326026,123328579,123334021,123334322,123336532,123337821,123339446,123345069,123346272,123346750,123347406,123348273,123349444,123356477,123357736,123359336,123359685,123361646,123369175,123370022,123370990,123371338,123371835,123372686,123380677,123396379	1.000000
gastrocnemius_medialis_male_adult_37_years	chr1	63607449	63607465	63607464	+	RAMPAGE_only	5	6	9	0.313550	3.000000	chr1	63607320	63607554	LINE|L2|L2c	-	chr1	63593808	63660245	PGM1|NM_001172819.1	+	63593808,63629424,63629941,63631656,63634828,63636233,63638684,63648516,63651668,63654331,63659585	63594144,63629587,63630088,63631782,63635019,63636388,63638800,63648652,63651852,63654466,63660245	0.666667
gastrocnemius_medialis_male_adult_37_years	chr2	224973963	224973987	224973986	+	High_confidence	39	42	89	3.100666	5.391134	chr2	224973948	224974218	LINE|L2|L2c	+	chr2	224973859	224974785	STRG.12898.1	+	224973859,224973969	224973879,224974785	0.764045
gastrocnemius_medialis_male_adult_37_years	chr9	129489063	129489141	129489125	+	High_confidence	4	6	22	0.766457	3.749903	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.863636
gastrocnemius_medialis_male_adult_37_years	chr20	44499095	44499175	44499158	-	RAMPAGE_only	3	3	30	1.045168	4.706891	chr20	44498888	44499217	LINE|L2|L2b	+	chr20	44497430	44522109	SERINC3|ENST00000342374.4	-	44497430,44501072,44503814,44504800,44506826,44509890,44511288,44512800,44513878,44521912	44500434,44501300,44503995,44504891,44506996,44510028,44511368,44512994,44514040,44522109	1.000000
gastrocnemius_medialis_male_adult_37_years	chr2	29182527	29182613	29182612	+	RAMPAGE_only	3	3	21	0.731618	3.321928	chr2	29182446	29182612	SINE|MIR|MIR3	-	chr2	29115425	29183813	CLIP4|NM_024692.5	+	29115425,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29115665,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29183813	0.952381
gastrocnemius_medialis_male_adult_37_years	chr2	26128314	26128345	26128315	+	RAMPAGE_only	7	15	29	1.010329	3.624380	chr2	26128071	26128402	DNA|hAT-Charlie|MER1B	-	chr2	26034109	26137454	RAB10|ENST00000264710.4	+	26034109,26098661,26109767,26127143,26127849,26134937	26034735,26098722,26109906,26127233,26127951,26137454	1.000000
gastrocnemius_medialis_male_adult_37_years	chr12	57787154	57787155	57787154	+	RAMPAGE_only	5	6	7	0.243873	2.807355	chr12	57787190	57787524	LINE|L2|L2a	+	chr12	57782775	57796734	TSFM|ENST00000323833.12	+	57782775,57783109,57786162,57787039,57791964,57792985,57796176	57782858,57783283,57786291,57787162,57792027,57793073,57796734	0.857143
gastrocnemius_medialis_male_adult_37_years	chr20	50131093	50131140	50131135	-	High_confidence	26	28	120	4.180673	5.818888	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.975000
gastrocnemius_medialis_male_adult_37_years	chr7	121062866	121062867	121062866	+	High_confidence	12	12	18	0.627101	3.614369	chr7	121062672	121063032	LTR|ERVL-MaLR|THE1B	+	chr7	121062764	121261918	CPED1|ENST00000423795.5	+	121062764,121064237,121097698,121099925,121124330,121125819,121127089,121128381,121130124,121133822,121136039,121140826,121141972,121236713,121244201,121261631	121062896,121064313,121097831,121100094,121124473,121125892,121127257,121128486,121130294,121133893,121136090,121141013,121142141,121236831,121244338,121261918	0.888889
gastrocnemius_medialis_male_adult_37_years	chr9	123237429	123237483	123237482	-	RAMPAGE_only	7	7	35	1.219363	3.760421	chr9	123237424	123237521	LTR|ERVL-MaLR|MLT1J	+	chr9	123179006	123213908	STRBP|ENST00000479114.2	-	123179006,123184131,123212584,123213588	123179227,123184298,123212708,123213908	0.885714
gastrocnemius_medialis_male_adult_37_years	chr16	68267936	68267937	68267936	+	RAMPAGE_only	328	351	360	12.542019	6.008511	chr16	68267617	68268452	LTR|ERVL|MER21B	+	chr16	68266601	68294747	STRG.65566.4	+	68266601,68273817,68274690,68287745,68290395,68291208,68291557,68294704	68266721,68273904,68275249,68287871,68290540,68291332,68291661,68294747	0.922222
gastrocnemius_medialis_male_adult_37_years	chr3	115110180	115110207	115110206	-	High_confidence	65	67	130	4.529062	5.882736	chr3	115109927	115110224	SINE|Alu|AluSx	+	chr3	114338652	115110794	STRG.16928.3	-	114338652,114350273,114380216,114389004,114500351,114693527,114801100,114900303,114974365,115071218,115110086	114339426,114351878,114380404,114389105,114500391,114693575,114801174,114900342,114974416,115071414,115110794	0.807692
gastrocnemius_medialis_male_adult_37_years	chr14	50756826	50756845	50756826	-	RAMPAGE_only	2	2	9	0.313550	3.000000	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.777778
gastrocnemius_medialis_male_adult_37_years	chr20	50267474	50267502	50267474	+	High_confidence	4	4	16	0.557423	3.773557	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.937500
gastrocnemius_medialis_male_adult_37_years	chr19	12800928	12800954	12800944	-	High_confidence	3	3	14	0.487745	2.777363	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.928571
gastrocnemius_medialis_male_adult_37_years	chr7	134549014	134549029	134549014	+	High_confidence	15	15	27	0.940651	4.286790	chr7	134548478	134549049	LTR|ERV1|LTR6A	+	chr7	134549096	134579840	AKR1B15|NM_001080538.2	+	134549096,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579840	0.851852
gastrocnemius_medialis_male_adult_37_years	chr17	69314819	69314866	69314865	-	High_confidence	2	2	8	0.278712	2.500000	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	1.000000
gastrocnemius_medialis_male_adult_37_years	chr2	70257688	70257707	70257706	+	High_confidence	7	8	13	0.452906	2.855389	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.923077
gastrocnemius_medialis_male_adult_37_years	chr19	15256206	15256246	15256206	-	RAMPAGE_only	1	1	10	0.348389	2.725481	chr19	15256082	15256220	LINE|L1|L1M5	-	chr19	15244255	15272981	STRG.70822.1	-	15244255,15244709,15254151,15255296,15256063,15256963,15263419,15264403,15265353,15267415,15268904,15272814	15244600,15249290,15254262,15255592,15256263,15257173,15263548,15264766,15265643,15267551,15269042,15272981	0.900000
gastrocnemius_medialis_male_adult_37_years	chr4	118976136	118976193	118976185	+	RAMPAGE_only	58	58	260	9.058125	6.346268	chr4	118976073	118977610	LTR|ERV1|LTR12C	-	chr4	119023470	119061247	SYNPO2|ENST00000504178.1	+	119023470,119026626,119029844,119057400	119023581,119027438,119031853,119061247	0.907692
gastrocnemius_medialis_male_adult_37_years	chr1	89272843	89272878	89272867	-	High_confidence	4	4	28	0.975490	4.026987	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.928571
gastrocnemius_medialis_male_adult_37_years	chr1	19344388	19344429	19344388	-	RAMPAGE_only	3	3	15	0.522584	3.128085	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.933333
gastrocnemius_medialis_male_adult_37_years	chr20	43779323	43779361	43779360	-	RAMPAGE_only	2	2	7	0.243873	2.584963	chr20	43779289	43779551	LTR|ERVL|ERVL-E-int	+	chr20	43773490	43777638	STRG.73390.1	-	43773490,43777542	43773647,43777638	0.571429
gastrocnemius_medialis_male_adult_37_years	chr4	118975804	118975806	118975804	+	RAMPAGE_only	2	4	6	0.209034	2.584963	chr4	118975835	118975971	SINE|MIR|MIRb	+	chr4	119023470	119061247	SYNPO2|ENST00000504178.1	+	119023470,119026626,119029844,119057400	119023581,119027438,119031853,119061247	0.666667
gastrocnemius_medialis_male_adult_37_years	chr19	39485769	39485803	39485802	+	High_confidence	2	2	6	0.209034	2.584963	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	1.000000
gastrocnemius_medialis_male_adult_37_years	chr5	112219334	112219335	112219334	+	RAMPAGE_only	23	23	26	0.905812	4.286790	chr5	112219140	112219503	LTR|ERVL-MaLR|THE1D	+	chr5	112228282	112257309	AC104126.1|ENST00000504004.1	+	112228282,112249597,112250614,112256862	112228352,112249632,112250773,112257309	0.961538
gastrocnemius_medialis_male_adult_37_years	chr16	21511577	21511624	21511577	-	RAMPAGE_only	15	15	68	2.369048	5.007972	chr16	21511306	21511594	LTR|ERV1|MER4B	+	chr16	21446682	21520179	STRG.64863.4	-	21446682,21447072,21447927,21448461,21449588,21452581,21452931,21454086,21455342,21455675,21456259,21457010,21457770,21457961,21458520,21459779,21460089,21463702,21464715,21467091,21469746,21471653,21472672,21473123,21476598,21478090,21479441,21484371,21487577,21519827	21447032,21447197,21448087,21448609,21449698,21452783,21453074,21454241,21455507,21455872,21456459,21457151,21457872,21458049,21458639,21459935,21460220,21463993,21464817,21467316,21469919,21471751,21472745,21473249,21476812,21478146,21479578,21484535,21487616,21520179	0.867647
gastrocnemius_medialis_male_adult_37_years	chr5	81251232	81251282	81251281	+	RAMPAGE_only	3	5	22	0.766457	4.186704	chr5	81251314	81251616	SINE|Alu|AluSc	+	chr5	81252732	81257923	CKMT2|ENST00000505135.1	+	81252732,81254395,81254992,81257732	81252893,81254491,81255214,81257923	0.954545
gastrocnemius_medialis_male_adult_37_years	chr18	8608041	8608049	8608041	+	RAMPAGE_only	5	5	14	0.487745	3.546594	chr18	8607829	8608179	SINE|Alu|AluJr	+	chr18	8609436	8639381	RAB12|ENST00000649141.1	+	8609436,8624937,8633188,8635532,8636252,8638148	8609953,8624998,8633327,8635622,8636357,8639381	0.785714
gastrocnemius_medialis_male_adult_37_years	chr9	62376632	62376642	62376632	+	High_confidence	9	10	22	0.766457	3.499228	chr9	62376600	62376639	SINE|MIR|MIRb	+	chr9	62376516	62434385	FGF7P6|ENST00000452826.2	+	62376516,62432875	62376813,62434385	0.863636
gastrocnemius_medialis_male_adult_37_years	chr15	31388051	31388054	31388051	+	RAMPAGE_only	60	62	107	3.727767	3.604991	chr15	31387992	31388093	LINE|CR1|L3b	+	chr15	31393574	31435665	KLF13|ENST00000558225.1	+	31393574,31435369	31393691,31435665	0.803738
gastrocnemius_medialis_male_adult_37_years	chr4	184804699	184804700	184804699	-	RAMPAGE_only	4	5	7	0.243873	2.584963	chr4	184804602	184804822	SINE|MIR|MIR	+	chr4	184755594	184805788	ACSL1|NM_001286710.1	-	184755594,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621,184768315,184770254,184773080,184773662,184773842,184776483,184776883,184780331,184783926,184788616,184803319,184805526	184757265,184757706,184757920,184760500,184762523,184763255,184764925,184765986,184766756,184768450,184770332,184773154,184773714,184773875,184776662,184776983,184780433,184783991,184788731,184803546,184805788	0.571429
gastrocnemius_medialis_male_adult_37_years	chr17	69241778	69241835	69241812	-	RAMPAGE_only	4	4	25	0.870974	3.859471	chr17	69241015	69241888	LINE|L2|L2a	+	chr17	69218695	69286261	STRG.68742.29	-	69218695,69221791,69222532,69223627,69225324,69227144,69229758,69248261,69249904,69250471,69253572,69253793,69254314,69255542,69255728,69256156,69259705,69260337,69261124,69261634,69267942,69271161,69273958,69277640,69283952,69285897,69286220	69219771,69221895,69222697,69223709,69225529,69229697,69247644,69248317,69249984,69250621,69253667,69253869,69254490,69255634,69255850,69256283,69259797,69260412,69261259,69264905,69270750,69271289,69274128,69277842,69284072,69286037,69286261	1.000000
gastrocnemius_medialis_male_adult_37_years	chr15	85719298	85719312	85719311	+	RAMPAGE_only	6	6	11	0.383228	3.121928	chr15	85719357	85719584	SINE|MIR|MIRb	+	chr15	85717151	85727247	AKAP13|ENST00000558644.2	+	85717151,85718012,85719075,85721990,85722229,85723071,85726409,85727065	85717402,85718159,85719326,85722116,85722347,85723320,85726486,85727247	0.909091
gastrocnemius_medialis_male_adult_37_years	chr6	123351372	123351451	123351413	-	RAMPAGE_only	10	11	74	2.578082	2.522748	chr6	123351221	123351364	SINE|MIR|MIRc	-	chr6	123349474	123637093	TRDN|NM_001251987.1	-	123349474,123366134,123375604,123377715,123377865,123381369,123382117,123388521,123393623,123438062,123438943,123464905,123497192,123503718,123512302,123516140,123530505,123547339,123548453,123570922,123636753	123352586,123366182,123375631,123377742,123377898,123381390,123382147,123388551,123393677,123438125,123439003,123464983,123497252,123503901,123512362,123516206,123530565,123547372,123548612,123571132,123637093	0.986486
gastrocnemius_medialis_male_adult_37_years	chr4	152412488	152412489	152412488	-	High_confidence	7	7	10	0.348389	2.947703	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.900000
gastrocnemius_medialis_male_adult_37_years	chr9	134406572	134406593	134406584	+	High_confidence	6	6	15	0.522584	2.985228	chr9	134406421	134406590	SINE|MIR|MIR	-	chr9	134406581	134440586	RXRA|NM_001291921.1	+	134406581,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134407492,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440586	0.933333
gastrocnemius_medialis_male_adult_37_years	chr2	201122543	201122590	201122589	+	High_confidence	76	88	159	5.539392	6.420491	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201122476	201130053	CFLAR|ENST00000425030.1	+	201122476,201129728	201122747,201130053	0.616352
gastrocnemius_medialis_male_adult_37_years	chr4	4269613	4269615	4269613	-	High_confidence	2	5	7	0.243873	2.521641	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	1.000000
gastrocnemius_medialis_male_adult_37_years	chr1	153967486	153967517	153967486	+	High_confidence	9	9	19	0.661940	3.836592	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.684211
gastrocnemius_medialis_male_adult_37_years	chr16	27229197	27229226	27229197	-	RAMPAGE_only	4	4	16	0.557423	3.323231	chr16	27229101	27229466	LINE|L2|L2b	+	chr16	27225143	27230839	NSMCE1|ENST00000565384.1	-	27225143,27225725,27226719,27230590	27225236,27225846,27226836,27230839	0.562500
gastrocnemius_medialis_male_adult_37_years	chr7	6054548	6054582	6054548	-	RAMPAGE_only	1	1	8	0.278712	2.807355	chr7	6054207	6054503	SINE|Alu|AluSx1	-	chr7	6022254	6059175	STRG.32801.2	-	6022254,6026727,6028614,6028917,6037423,6038559,6040891,6042932,6044561,6046070,6046991,6048806,6049911,6054545,6058965	6024801,6026961,6028697,6029032,6037524,6038671,6041219,6042990,6044661,6046151,6047091,6048844,6050045,6054704,6059175	0.875000
gastrocnemius_medialis_male_adult_37_years	chr18	9117553	9117610	9117605	+	RAMPAGE_only	8	9	59	2.055498	5.314681	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	0.915254
gastrocnemius_medialis_male_adult_37_years	chr8	102285754	102285761	102285754	-	RAMPAGE_only	1	2	7	0.243873	2.584963	chr8	102285712	102285783	DNA|hAT-Ac|OldhAT1	-	chr8	102252272	102412689	UBR5|NM_001282873.1	-	102252272,102257631,102258984,102261145,102261914,102264473,102265099,102266946,102268977,102270038,102271133,102272528,102275520,102275707,102276971,102278825,102279035,102280393,102281288,102285126,102285512,102286359,102287432,102288154,102289452,102293604,102293954,102294981,102295203,102295413,102295635,102296892,102297457,102298391,102298847,102299451,102299999,102304042,102305084,102311298,102311734,102312133,102312341,102313803,102314743,102323310,102326545,102327741,102329089,102329282,102342472,102345395,102346235,102346902,102360070,102360588,102361124,102361581,102412172	102254514,102257717,102259129,102261259,102262070,102264558,102265275,102267007,102269108,102270183,102271245,102272772,102275619,102275828,102277192,102278939,102279208,102280467,102281519,102285338,102285781,102286617,102287564,102288266,102289576,102293844,102294115,102295111,102295330,102295532,102295782,102296984,102297606,102298489,102298971,102299547,102300151,102304169,102305295,102311496,102311889,102312245,102312485,102313916,102314853,102323495,102326663,102327896,102329200,102329399,102342684,102345545,102346395,102347092,102360190,102360665,102361206,102361626,102412689	0.857143
gastrocnemius_medialis_male_adult_37_years	chr6	123105865	123105907	123105865	+	High_confidence	55	59	222	7.734245	4.944437	chr6	123103740	123107191	LINE|L1|L1PA8A	-	chr6	123105879	123112620	STRG.31240.1	+	123105879,123106134,123107201,123112060	123105945,123106288,123107598,123112620	0.950450
gastrocnemius_medialis_male_adult_37_years	chr6	54162172	54162468	54162213	+	RAMPAGE_only	12	13	253	8.814252	5.741256	chr6	54162127	54162409	LINE|L2|L2b	-	chr6	54018999	54266277	STRG.29913.6	+	54018999,54121446,54124472,54136714,54149055,54160366,54160515,54160739,54189869,54230713,54257307	54019091,54121602,54124865,54138286,54149127,54160432,54160599,54169572,54202233,54230917,54266277	1.000000
gastrocnemius_medialis_male_adult_37_years	chr14	73725527	73725530	73725529	-	RAMPAGE_only	5	8	9	0.313550	2.750000	chr14	73725505	73725621	SINE|MIR|MIRb	+	chr14	73715123	73727133	ELMSAN1|ENST00000476562.5	-	73715123,73721296,73722697,73725271,73726032,73726603,73726829	73719501,73721509,73722847,73725360,73726108,73726707,73727133	0.777778
gastrocnemius_medialis_male_adult_37_years	chr15	80059915	80059919	80059918	+	High_confidence	68	73	134	4.668418	4.732737	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.992537
gastrocnemius_medialis_male_adult_37_years	chr3	193614733	193614861	193614823	+	High_confidence	5	5	25	0.870974	2.721252	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.880000
gastrocnemius_medialis_male_adult_37_years	chr2	96303166	96303319	96303166	-	RAMPAGE_only	6	6	48	1.672269	4.795089	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.958333
gastrocnemius_medialis_male_adult_37_years	chr2	85584081	85584082	85584081	+	High_confidence	15	15	20	0.696779	4.321928	chr2	85584038	85584148	LINE|L2|L2b	+	chr2	85584407	85593388	VAMP5|NM_006634.2	+	85584407,85591724,85592947	85584493,85591862,85593388	0.750000
gastrocnemius_medialis_male_adult_37_years	chr11	67884981	67884996	67884995	+	RAMPAGE_only	8	8	13	0.452906	3.392747	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.923077
gastrocnemius_medialis_male_adult_37_years	chr6	10521501	10521526	10521525	+	High_confidence	3	3	10	0.348389	2.503258	chr6	10521558	10521623	LINE|L2|L2a	+	chr6	10521484	10621422	GCNT2|ENST00000474518.1	+	10521484,10527473,10528630,10621350	10521594,10527660,10528841,10621422	0.900000
gastrocnemius_medialis_male_adult_37_years	chr5	55982724	55982804	55982788	-	High_confidence	2	2	16	0.557423	3.640224	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.937500
gastrocnemius_medialis_male_adult_37_years	chr14	27529239	27529240	27529239	+	RAMPAGE_only	25	30	31	1.080007	4.840224	chr14	27529044	27529416	LTR|ERVL-MaLR|THE1B	+	chr14	27612587	27639636	LINC00645|ENST00000557359.5	+	27612587,27613420,27634243,27636419	27612677,27613496,27634344,27639636	0.516129
gastrocnemius_medialis_male_adult_37_years	chr9	33365179	33365199	33365198	+	RAMPAGE_only	3	3	7	0.243873	2.521641	chr9	33364991	33365299	SINE|Alu|AluSq	+	chr9	33342811	33371157	STRG.41292.4	+	33342811,33344068,33347037,33351559,33352645,33354085,33354850,33364009,33364707,33367514,33369905	33342854,33344188,33347117,33351790,33352719,33354187,33354892,33364108,33366774,33367619,33371157	1.000000
gastrocnemius_medialis_male_adult_37_years	chr6	33750454	33750487	33750486	-	RAMPAGE_only	57	63	131	4.563901	5.715106	chr6	33750365	33750686	LINE|L2|L2b	+	chr6	33721665	33746985	IP6K3|NM_001142883.1	-	33721665,33725440,33726730,33728086,33735277,33739132,33746757	33723187,33725616,33726906,33728300,33735655,33739261,33746985	0.900763
gastrocnemius_medialis_male_adult_37_years	chr9	121313949	121314021	121314002	+	RAMPAGE_only	14	15	85	2.961310	4.854251	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.988235
gastrocnemius_medialis_male_adult_37_years	chr9	123179139	123179157	123179155	-	RAMPAGE_only	2	3	7	0.243873	2.584963	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.714286
gastrocnemius_medialis_male_adult_37_years	chr2	201122662	201122663	201122662	+	RAMPAGE_only	10	10	11	0.383228	3.321928	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201118663	201160455	CFLAR|ENST00000439154.6	+	201118663,201129728,201133028,201135971,201140356,201142644,201145377,201149002,201149753,201160431	201118901,201130146,201133134,201136107,201140439,201142762,201145432,201149052,201149835,201160455	0.909091
gastrocnemius_medialis_male_adult_37_years	chr7	154928503	154928504	154928503	+	High_confidence	7	7	9	0.313550	3.000000	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.777778
gastrocnemius_medialis_male_adult_37_years	chr15	31387989	31387992	31387991	+	RAMPAGE_only	21	26	32	1.114846	4.161406	chr15	31387992	31388093	LINE|CR1|L3b	+	chr15	31393574	31435665	KLF13|ENST00000558225.1	+	31393574,31435369	31393691,31435665	0.593750
gastrocnemius_medialis_male_adult_37_years	chr11	33705677	33705874	33705777	-	RAMPAGE_only	8	9	110	3.832284	5.517405	chr11	33705475	33705797	LTR|ERVL|MLT2B3	+	chr11	33703009	33722727	CD59|NM_001127225.1	-	33703009,33717369,33722378,33722570	33710343,33717471,33722463,33722727	0.945455
gastrocnemius_medialis_male_adult_37_years	chr15	25346012	25346026	25346023	-	High_confidence	109	111	381	13.273637	6.477193	chr15	25345979	25347018	LINE|L1|L1ME2	+	chr15	25333727	25346031	UBE3A|ENST00000636667.1	-	25333727,25340084,25345979	25339257,25340228,25346031	0.947507
gastrocnemius_medialis_male_adult_37_years	chr2	26123980	26123984	26123980	+	RAMPAGE_only	4	4	11	0.383228	2.732159	chr2	26122646	26124261	DNA|TcMar-Tigger|Tigger2	+	chr2	26098529	26135068	RAB10|ENST00000473035.1	+	26098529,26098661,26109767,26127143,26127849,26134937	26098577,26098722,26109906,26127233,26127951,26135068	0.545455
gastrocnemius_medialis_male_adult_37_years	chr6	43777343	43777384	43777343	+	High_confidence	16	16	35	1.219363	4.294246	chr6	43777305	43777366	LINE|CR1|L3b	+	chr6	43777719	43786439	VEGFA|ENST00000497139.5	+	43777719,43778888,43784540	43778536,43778918,43786439	0.857143
gastrocnemius_medialis_male_adult_37_years	chr4	119217642	119217645	119217642	+	RAMPAGE_only	2	2	7	0.243873	2.807355	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212635	119294746	USP53|ENST00000274030.10	+	119212635,119214069,119217549,119235289,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119212873,119214222,119217673,119235411,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119294746	1.000000
gastrocnemius_medialis_male_adult_37_years	chr8	134480404	134480405	134480404	-	RAMPAGE_only	6	6	6	0.209034	2.584963	chr8	134480363	134480477	LINE|L2|L2b	+	chr8	134478221	134510182	ZFAT|ENST00000521673.5	-	134478221,134509618,134510061	134478721,134509749,134510182	0.666667
gastrocnemius_medialis_male_adult_37_years	chr1	225700904	225701006	225700988	+	High_confidence	5	5	33	1.149685	3.288853	chr1	225700876	225701240	LTR|ERVL-MaLR|MLT1L	-	chr1	225700663	225723055	STRG.6014.1	+	225700663,225710502,225716045,225722749	225701106,225710568,225718702,225723055	0.878788
gastrocnemius_medialis_male_adult_37_years	chr6	46105691	46105710	46105693	-	RAMPAGE_only	27	40	79	2.752276	4.472918	chr6	46104973	46106121	LTR|ERV1|LTR49-int	+	chr6	46097092	46129591	AL035701.1|ENST00000444038.2	-	46097092,46102539,46129503	46097346,46102659,46129591	0.696203
gastrocnemius_medialis_male_adult_37_years	chr1	59697528	59697535	59697528	+	RAMPAGE_only	4	4	9	0.313550	2.500000	chr1	59697175	59697540	LINE|L1|L1MB3	-	chr1	59673685	59762727	FGGY|ENST00000471169.5	+	59673685,59674038,59757930,59762502	59673795,59674133,59757992,59762727	0.666667
gastrocnemius_medialis_male_adult_37_years	chr2	215843575	215843625	215843601	-	High_confidence	5	5	30	1.045168	4.487123	chr2	215843544	215843646	LINE|L2|L2b	+	chr2	215611562	215843536	LINC00607|ENST00000445174.5	-	215611562,215615276,215621117,215622685,215624111,215740876,215743813,215747303,215750242,215843325	215613738,215615634,215621350,215622761,215624235,215741021,215743914,215747394,215750417,215843536	0.633333
gastrocnemius_medialis_male_adult_37_years	chr7	11194703	11194709	11194708	+	High_confidence	5	5	9	0.313550	3.000000	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11194705	11244479	AC004160.1|ENST00000627042.2	+	11194705,11197309,11240536,11244257	11194784,11197444,11240731,11244479	0.555556
gastrocnemius_medialis_male_adult_37_years	chr2	200889279	200889318	200889279	-	High_confidence	28	31	107	3.727767	5.718151	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889276	PPIL3|ENST00000465823.5	-	200870955,200876918,200881420,200885697,200887612,200888955	200871521,200877037,200881488,200885772,200887685,200889276	0.700935
gastrocnemius_medialis_male_adult_37_years	chr6	166561753	166561804	166561753	-	RAMPAGE_only	4	7	19	0.661940	3.892407	chr6	166561716	166561770	DNA|hAT-Charlie|MER30	-	chr6	166409363	166544690	RPS6KA2|NM_001318938.1	-	166409363,166413793,166418224,166419881,166423255,166430452,166432400,166448723,166451102,166459448,166469840,166488832,166490670,166498507,166500886,166504505,166508202,166510276,166531231,166538667,166544599	166412887,166413931,166418342,166419958,166423417,166430611,166432490,166448849,166451233,166459551,166469905,166488921,166490741,166498650,166500924,166504612,166508282,166510357,166531313,166538784,166544690	0.894737
gastrocnemius_medialis_male_adult_37_years	chr11	61802081	61802138	61802081	-	RAMPAGE_only	3	3	15	0.522584	3.506891	chr11	61801882	61802044	SINE|Alu|AluSx	-	chr11	61793299	61816889	STRG.49205.6	-	61793299,61800519,61802800,61803031,61803362,61803669,61804684,61806663,61810750,61810973,61812470,61813242,61816554	61800489,61802462,61802926,61803111,61803459,61803767,61804761,61806724,61810879,61811075,61812668,61813353,61816889	1.000000
gastrocnemius_medialis_male_adult_37_years	chr5	140700424	140700452	140700445	+	High_confidence	666	800	1857	64.695914	4.910217	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.983306
gastrocnemius_medialis_male_adult_37_years	chr2	11201309	11201391	11201309	-	RAMPAGE_only	7	8	56	1.950981	5.302629	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.982143
gastrocnemius_medialis_male_adult_37_years	chr2	240022181	240022280	240022181	-	RAMPAGE_only	8	8	37	1.289041	3.249556	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.945946
gastrocnemius_medialis_male_adult_37_years	chr12	110440319	110440320	110440319	-	RAMPAGE_only	5	5	8	0.278712	2.807355	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.875000
gastrocnemius_medialis_male_adult_37_years	chr2	178614863	178614965	178614964	-	RAMPAGE_only	146	151	1546	53.861003	6.929957	chr2	178614941	178615012	DNA|hAT-Tip100|MER91B	-	chr2	178525988	178651516	STRG.24053.3	-	178525988,178527445,178528273,178528527,178529959,178530240,178535981,178536937,178537341,178538539,178538945,178539381,178540067,178541281,178542263,178542661,178543068,178543833,178544200,178545387,178545819,178546211,178546599,178547002,178547406,178549569,178549985,178550966,178551629,178553501,178553913,178554452,178554864,178556847,178557252,178557647,178558340,178559310,178576528,178576922,178577601,178577987,178578610,178578805,178579560,178579938,178580321,178581498,178581905,178582295,178582939,178583606,178583795,178584275,178584668,178585071,178586504,178587117,178587515,178587898,178588537,178591598,178591977,178592378,178592774,178593172,178593567,178593960,178594343,178595506,178597537,178597907,178598505,178598747,178599145,178599553,178600853,178601264,178601657,178601881,178602001,178602281,178603875,178604707,178604986,178605413,178607020,178607400,178607784,178608177,178608605,178609207,178609683,178610089,178610992,178611371,178611757,178612056,178612276,178612772,178613160,178613750,178614051,178614465,178614846,178615306,178615640,178616478,178616728,178617119,178617324,178617778,178618188,178618583,178619620,178619987,178620216,178620714,178621101,178621474,178621839,178622669,178624464,178625272,178629300,178630240,178630803,178631033,178632146,178632525,178632917,178633186,178633412,178633816,178634365,178634722,178635164,178635439,178635962,178636397,178637368,178639698,178640047,178640540,178641240,178642236,178644547,178645919,178646484,178647063,178647380,178649247,178649553,178649816,178650163,178650750,178651242,178651452	178527307,178527748,178528427,178529219,178530116,178535849,178536575,178537243,178537917,178538839,178539251,178539966,178540370,178541584,178542563,178542949,178543662,178544115,178544506,178545693,178546116,178546502,178546905,178547305,178549473,178549869,178550273,178551260,178553396,178553807,178554216,178554752,178555152,178557144,178557555,178558235,178558637,178576416,178576831,178577510,178577898,178578185,178578715,178579393,178579848,178580229,178580609,178581804,178582208,178582592,178583227,178583729,178583906,178584578,178584968,178585347,178586807,178587417,178587800,178588219,178591504,178591892,178592277,178592660,178593083,178593475,178593867,178594242,178594646,178595809,178597819,178598058,178598654,178599062,178599445,178599850,178601171,178601564,178601787,178601914,178602150,178602590,178604305,178604898,178605295,178605713,178607314,178607685,178608081,178608477,178608908,178609570,178609986,178610389,178611271,178611677,178611954,178612162,178612576,178613072,178613276,178613937,178614348,178614753,178614968,178615484,178615788,178616630,178617013,178617234,178617512,178618081,178618491,178618853,178619887,178620112,178620625,178620993,178621368,178621741,178622008,178622767,178624731,178625396,178629443,178630367,178630943,178631300,178632413,178632792,178633044,178633326,178633676,178634083,178634629,178634849,178635304,178635715,178636241,178636799,178637419,178639788,178640110,178640630,178641315,178642317,178644616,178646030,178646559,178647144,178647464,178649331,178649631,178649894,178650271,178650834,178651320,178651516	0.993532
gastrocnemius_medialis_male_adult_37_years	chrX	2321587	2321639	2321612	+	High_confidence	10	12	58	2.020659	4.964297	chrX	2321387	2321730	LTR|ERVL-MaLR|MLT1A	+	chrX	2321275	2331461	STRG.76418.2	+	2321275,2326017,2326831,2330794	2321916,2326181,2330052,2331461	0.706897
gastrocnemius_medialis_male_adult_37_years	chr2	227164620	227164621	227164620	+	High_confidence	14	14	14	0.487745	3.807355	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227251874	STRG.13049.3	+	227164564,227237967,227240142,227244319,227245953,227246684,227247557,227248442,227251139,227251335	227164813,227238024,227240232,227244995,227246016,227246738,227247584,227248520,227251202,227251874	0.714286
gastrocnemius_medialis_male_adult_37_years	chr3	125604629	125604630	125604629	+	High_confidence	53	53	69	2.403887	5.368194	chr3	125604324	125604824	LTR|ERV1|LTR12	+	chr3	125604659	125606478	STRG.17050.1	+	125604659,125605873,125606094	125604854,125605984,125606478	0.565217
gastrocnemius_medialis_male_adult_37_years	chr2	215855633	215855634	215855633	+	RAMPAGE_only	6	6	7	0.243873	2.584963	chr2	215855436	215855812	LTR|ERVL-MaLR|THE1C	+	chr2	215869922	215870518	AC122136.1|ENST00000443971.1	+	215869922,215870263	215870145,215870518	0.857143
gastrocnemius_medialis_male_adult_37_years	chr3	155293980	155294005	155294001	-	High_confidence	15	16	59	2.055498	5.204976	chr3	155293994	155294195	SINE|MIR|MIRb	+	chr3	155290228	155293775	DWORF|ENST00000489090.1	-	155290228,155290939,155293619	155290846,155291038,155293775	0.949153
gastrocnemius_medialis_male_adult_37_years	chr8	124673341	124673382	124673346	-	High_confidence	44	46	184	6.410365	4.425394	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.842391
gastrocnemius_medialis_male_adult_37_years	chr8	143281669	143281687	143281669	-	High_confidence	97	99	295	10.277488	5.334873	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280165	143281660	MINCR|ENST00000517411.1	-	143280165,143280881,143281481	143280515,143280997,143281660	0.572881
gastrocnemius_medialis_male_adult_37_years	chr11	107719823	107719824	107719823	-	High_confidence	11	11	12	0.418067	2.845351	chr11	107719646	107719884	LTR|Gypsy?|LTR88c	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.916667
gastrocnemius_medialis_male_adult_37_years	chr16	50668402	50668407	50668406	-	High_confidence	26	26	54	1.881303	4.169672	chr16	50668230	50668595	DNA|hAT-Charlie|MER113	+	chr16	50666680	50668414	STRG.65173.1	-	50666680,50667908	50666916,50668414	0.944444
gastrocnemius_medialis_male_adult_37_years	chr11	14337098	14337140	14337098	-	High_confidence	12	12	47	1.637430	5.028890	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.723404
gastrocnemius_medialis_male_adult_37_years	chr15	24995208	24995219	24995218	+	RAMPAGE_only	3	4	9	0.313550	2.750000	chr15	24995035	24995326	SINE|Alu|AluSx4	+	chr15	24985099	25002404	STRG.61052.10	+	24985099,24998969,25000244,25001357	24998486,24999078,25000374,25002404	0.888889
gastrocnemius_medialis_male_adult_37_years	chr1	85379858	85379926	85379861	-	RAMPAGE_only	3	3	23	0.801296	4.106603	chr1	85379701	85380025	LINE|L2|L2	+	chr1	85321451	85404528	DDAH1|ENST00000633113.1	-	85321451,85324739,85350414,85351505,85358747,85404380	85321568,85324883,85350534,85351579,85358847,85404528	0.652174
gastrocnemius_medialis_male_adult_37_years	chr6	43777274	43777285	43777284	+	High_confidence	10	10	17	0.592262	3.875000	chr6	43777305	43777366	LINE|CR1|L3b	+	chr6	43777719	43786439	VEGFA|ENST00000497139.5	+	43777719,43778888,43784540	43778536,43778918,43786439	0.823529
gastrocnemius_medialis_male_adult_37_years	chr22	35623191	35623192	35623191	-	High_confidence	20	20	20	0.696779	4.021928	chr22	35623096	35623262	SINE|MIR|MIR	-	chr22	35606763	35623354	MB|ENST00000359787.5	-	35606763,35610883,35617162,35623190	35607443,35611106,35617265,35623354	1.000000
gastrocnemius_medialis_male_adult_37_years	chr15	45441877	45441878	45441877	-	High_confidence	12	12	12	0.418067	3.251629	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45430651	45441808	AC025580.1|ENST00000559553.1	-	45430651,45433612,45441780	45430814,45434150,45441808	0.500000
gastrocnemius_medialis_male_adult_37_years	chr11	100715407	100715410	100715407	+	RAMPAGE_only	12	12	19	0.661940	4.037401	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.684211
gastrocnemius_medialis_male_adult_37_years	chr2	227164644	227164660	227164644	+	High_confidence	2	2	8	0.278712	3.000000	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.750000
gastrocnemius_medialis_male_adult_37_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	12	12	12	0.418067	3.022055	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
gastrocnemius_medialis_male_adult_37_years	chr19	20423690	20423704	20423703	-	RAMPAGE_only	3	4	6	0.209034	2.584963	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.833333
gastrocnemius_medialis_male_adult_37_years	chr12	46243267	46243294	46243267	-	RAMPAGE_only	7	7	15	0.522584	3.378783	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.933333
gastrocnemius_medialis_male_adult_37_years	chr13	27445105	27445121	27445105	-	RAMPAGE_only	5	5	12	0.418067	2.845351	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.916667
gastrocnemius_medialis_male_adult_37_years	chr6	169689312	169689369	169689312	-	RAMPAGE_only	12	12	74	2.578082	5.282862	chr6	169689217	169689326	SINE|MIR|MIRb	+	chr6	169457354	169701586	WDR27|ENST00000423258.5	-	169457354,169582835,169602218,169613558,169632946,169634427,169636370,169638538,169643696,169647772,169649197,169651929,169658275,169659085,169659450,169660662,169662303,169664165,169665485,169672254,169688816,169701550	169457634,169582934,169602321,169613656,169633068,169634525,169636504,169638660,169643786,169647870,169649275,169652008,169658358,169659207,169659518,169660766,169662424,169664286,169665556,169672396,169689012,169701586	0.770270
gastrocnemius_medialis_male_adult_37_years	chr17	47067487	47067512	47067498	-	High_confidence	287	307	936	32.609249	6.073556	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.866453
gastrocnemius_medialis_male_adult_37_years	chr15	42415244	42415607	42415259	-	RAMPAGE_only	9	10	210	7.316178	5.590934	chr15	42415122	42415421	SINE|Alu|AluSq2	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	0.985714
gastrocnemius_medialis_male_adult_37_years	chr8	41662158	41662160	41662158	-	RAMPAGE_only	5	9	12	0.418067	2.845351	chr8	41661976	41662267	SINE|Alu|AluSx1	+	chr8	41653224	41665207	STRG.38169.3	-	41653224,41661429,41661800,41663658,41664804	41655753,41661564,41661941,41663742,41665207	0.833333
gastrocnemius_medialis_male_adult_37_years	chr17	29667464	29667465	29667464	-	RAMPAGE_only	6	6	6	0.209034	2.584963	chr17	29667384	29667678	DNA|hAT-Charlie|MER1B	+	chr17	29625937	29761390	STRG.67195.4	-	29625937,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677741,29684684,29695523,29703062,29761390	1.000000
gastrocnemius_medialis_male_adult_37_years	chr1	54200000	54200038	54200000	-	High_confidence	6	7	23	0.801296	4.229871	chr1	54199790	54199971	SINE|MIR|MIRb	-	chr1	54172335	54200010	CYB5RL|ENST00000421415.5	-	54172335,54179148,54184160,54187651,54195418,54196368,54199975	54174822,54179352,54184265,54187739,54195715,54196491,54200010	0.869565
gastrocnemius_medialis_male_adult_37_years	chr2	29114173	29114177	29114173	+	High_confidence	3	3	8	0.278712	2.750000	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	1.000000
gastrocnemius_medialis_male_adult_37_years	chr2	159428333	159428357	159428356	-	RAMPAGE_only	6	7	15	0.522584	3.807355	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.533333
gastrocnemius_medialis_male_adult_37_years	chr9	129488846	129488857	129488856	+	High_confidence	4	4	9	0.313550	3.000000	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.888889
gastrocnemius_medialis_male_adult_37_years	chr8	67061375	67061376	67061375	+	RAMPAGE_only	8	10	10	0.348389	3.121928	chr8	67061313	67061442	SINE|Alu|FLAM_C	+	chr8	67062425	67093620	CSPP1|ENST00000521919.5	+	67062425,67074242,67076481,67086006,67091802,67093542	67062520,67074351,67076581,67086110,67091883,67093620	0.900000
gastrocnemius_medialis_male_adult_37_years	chr12	27579238	27579245	27579244	+	RAMPAGE_only	7	7	13	0.452906	3.251629	chr12	27579150	27579292	SINE|MIR|MIR3	+	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.615385
gastrocnemius_medialis_male_adult_37_years	chr10	13136850	13137064	13136971	+	RAMPAGE_only	7	7	59	2.055498	4.452696	chr10	13136997	13137298	SINE|Alu|AluSz	+	chr10	13100224	13138291	OPTN|ENST00000378747.7	+	13100224,13108137,13109111,13110273,13112452,13116266,13118887,13122384,13123994,13125417,13125945,13127744,13132066,13133501,13136744	13100302,13108289,13109288,13110476,13112635,13116340,13119040,13122487,13124110,13125567,13126039,13127903,13132197,13133581,13138291	0.949153
gastrocnemius_medialis_male_adult_37_years	chr7	7555422	7555426	7555422	-	RAMPAGE_only	9	9	27	0.940651	4.257756	chr7	7555240	7555694	LTR|ERVL|LTR16A	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.925926
gastrocnemius_medialis_male_adult_37_years	chr18	46087042	46087061	46087042	-	RAMPAGE_only	4	4	11	0.383228	3.321928	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084149	46088696	ATP5F1A|ENST00000586523.1	-	46084149	46088696	0.818182
gastrocnemius_medialis_male_adult_37_years	chr3	54637852	54637853	54637852	-	RAMPAGE_only	8	10	12	0.418067	3.095795	chr3	54636818	54639750	LTR|ERV1|HERVH-int	-	chr3	54632121	54639857	ESRG|ENST00000583516.1	-	54632121,54633558,54634460,54637690	54632807,54633740,54634565,54639857	0.833333
gastrocnemius_medialis_male_adult_37_years	chr1	77933061	77933124	77933063	+	RAMPAGE_only	4	6	27	0.940651	3.719295	chr1	77932883	77933190	SINE|Alu|AluSp	+	chr1	77931661	77943199	NEXN|ENST00000480732.2	+	77931661,77933047,77935822,77942022,77942460	77932054,77933479,77936044,77942208,77943199	0.962963
gastrocnemius_medialis_male_adult_37_years	chr14	23406296	23406301	23406300	-	RAMPAGE_only	4	4	8	0.278712	3.000000	chr14	23406293	23406406	SINE|MIR|MIRb	-	chr14	23382018	23407592	MYH6|ENST00000356287.3	-	23382018,23382427,23383224,23384441,23384915,23385927,23386314,23387528,23387757,23388154,23388858,23389392,23389592,23390056,23392561,23392911,23393341,23393665,23394067,23396283,23396693,23396962,23397169,23397542,23398727,23400255,23400708,23402463,23402696,23403347,23403714,23404295,23404710,23405099,23405222,23405626,23407022,23407575	23382063,23382562,23383320,23384717,23385041,23386131,23386623,23387653,23387923,23388338,23389055,23389511,23389719,23390446,23392652,23393057,23393518,23393908,23394323,23396420,23396817,23397080,23397257,23397613,23399037,23400426,23400977,23402602,23402800,23403446,23403778,23404388,23404822,23405127,23405379,23405770,23407236,23407592	1.000000
gastrocnemius_medialis_male_adult_37_years	chr2	201458835	201458854	201458835	+	RAMPAGE_only	3	4	9	0.313550	2.947703	chr2	201458879	201459004	SINE|Alu|FLAM_C	+	chr2	201451795	201480846	STRADB|ENST00000392249.6	+	201451795,201454745,201458783,201469952,201472954,201474646,201475618,201477618,201478086,201478356,201479488,201480007	201451938,201454852,201458864,201470052,201473076,201474755,201475742,201477790,201478191,201478601,201479531,201480846	1.000000
gastrocnemius_medialis_male_adult_37_years	chr3	134485443	134485490	134485443	-	High_confidence	5	5	25	0.870974	4.316828	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.840000
gastrocnemius_medialis_male_adult_37_years	chr16	84139280	84139303	84139280	-	RAMPAGE_only	2	2	6	0.209034	2.584963	chr16	84139153	84139637	LTR|ERVL-MaLR|MLT1D	+	chr16	84130318	84144438	HSDL1|ENST00000568857.5	-	84130318,84131101,84135543,84144290	84130431,84131327,84135605,84144438	0.500000
gastrocnemius_medialis_male_adult_37_years	chr4	119235301	119235327	119235306	+	RAMPAGE_only	2	2	9	0.313550	3.000000	chr4	119235263	119235577	SINE|Alu|AluJr	-	chr4	119239215	119295517	USP53|ENST00000450251.5	+	119239215,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119295517	0.555556
gastrocnemius_medialis_male_adult_37_years	chr1	155343321	155343339	155343321	-	RAMPAGE_only	6	6	11	0.383228	2.646439	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.909091
gastrocnemius_medialis_male_adult_37_years	chr3	33864073	33864101	33864090	+	RAMPAGE_only	2	2	8	0.278712	2.521641	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.875000
gastrocnemius_medialis_male_adult_37_years	chr9	72363490	72363576	72363575	-	High_confidence	5	8	33	1.149685	4.502583	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.727273
gastrocnemius_medialis_male_adult_37_years	chr8	144106344	144106384	144106344	+	RAMPAGE_only	4	4	18	0.627101	3.130718	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144104511	144107611	MAF1|ENST00000534585.5	+	144104511,144105639,144105868,144106075,144106342,144106834,144107087	144104858,144105766,144105997,144106241,144106674,144106963,144107611	0.944444
gastrocnemius_medialis_male_adult_37_years	chr6	71603971	71603988	71603987	+	RAMPAGE_only	6	7	21	0.731618	3.787144	chr6	71603955	71604328	LINE|L1|L1MEc	-	chr6	71886702	72264004	RIMS1|ENST00000370419.6	+	71886702,71968982,72096948,72099974,72179574,72182283,72233772,72235617,72237822,72242313,72245814,72248014,72250329,72250920,72251214,72252760,72258124,72258985,72260704	71887187,71969063,72097162,72099986,72179915,72183149,72233840,72235728,72237922,72242437,72245861,72248127,72250460,72251092,72251368,72252832,72258281,72259111,72264004	0.619048
gastrocnemius_medialis_male_adult_37_years	chrX	155719045	155719046	155719045	-	RAMPAGE_only	38	45	54	1.881303	5.079965	chrX	155718901	155722240	LINE|L1|L1M1	+	chrX	155489010	155612961	TMLHE|NM_018196.3	-	155489010,155492356,155506897,155511672,155513985,155524455,155545095,155612791	155491666,155492495,155507134,155511792,155514265,155524632,155545277,155612961	0.870370
gastrocnemius_medialis_male_adult_37_years	chr4	76078743	76078764	76078743	+	RAMPAGE_only	5	5	18	0.627101	3.947703	chr4	76078780	76078798	SINE|MIR|MIR	+	chr4	76075250	76082278	ART3|ENST00000510423.1	+	76075250,76075880,76081823	76075277,76075958,76082278	0.500000
gastrocnemius_medialis_male_adult_37_years	chr16	87381437	87381460	87381451	-	RAMPAGE_only	3	4	9	0.313550	2.947703	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87326986	87383748	STRG.66099.1	-	87326986,87333885,87335303,87336154,87342876,87343597,87347173,87358410,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87358497,87360366,87383748	0.777778
gastrocnemius_medialis_male_adult_37_years	chr14	27612576	27612577	27612576	+	High_confidence	54	54	57	1.985820	5.333501	chr14	27612284	27612881	LTR|ERVL|LTR66	+	chr14	27612587	27639636	LINC00645|NR_039992.2	+	27612587,27613420,27619822,27634243,27636419	27612677,27613496,27619873,27634344,27639636	0.771930
gastrocnemius_medialis_male_adult_37_years	chr8	39083039	39083066	39083065	+	RAMPAGE_only	4	4	10	0.348389	3.121928	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.900000
gastrocnemius_medialis_male_adult_37_years	chr7	95594390	95594391	95594390	-	RAMPAGE_only	6	6	6	0.209034	2.584963	chr7	95594375	95594617	SINE|MIR|MIR	-	chr7	95584374	95592760	PDK4|ENST00000473796.1	-	95584374,95587009,95587417,95587726,95589639,95591987,95592510	95585781,95587123,95587528,95587825,95589716,95592065,95592760	0.500000
gastrocnemius_medialis_male_adult_37_years	chr7	64999443	64999444	64999443	-	RAMPAGE_only	6	8	8	0.278712	2.750000	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64990808	65006653	ERV3-1|ENST00000394323.2	-	64990808,65006540	64993414,65006653	0.750000
gastrocnemius_medialis_male_adult_37_years	chr6	2963874	2963895	2963894	-	RAMPAGE_only	3	3	9	0.313550	2.750000	chr6	2963724	2964138	LTR|ERV1|LTR35B	+	chr6	2948158	2962170	SERPINB6|NM_001271825.1	-	2948158,2948913,2953043,2954591,2955523,2959167,2961893	2948699,2949069,2953186,2954709,2955670,2959342,2962170	0.888889
gastrocnemius_medialis_male_adult_37_years	chr18	34907125	34907127	34907125	-	RAMPAGE_only	6	10	13	0.452906	3.418296	chr18	34906945	34907321	LTR|ERVL-MaLR|THE1C	-	chr18	34892019	34893273	AC068506.1|ENST00000613388.1	-	34892019,34893159	34892450,34893273	0.538462
gastrocnemius_medialis_male_adult_37_years	chr4	76079019	76079056	76079019	+	RAMPAGE_only	15	15	93	3.240022	5.620601	chr4	76078798	76079093	SINE|Alu|AluY	+	chr4	76075250	76082278	ART3|ENST00000510423.1	+	76075250,76075880,76081823	76075277,76075958,76082278	0.924731
gastrocnemius_medialis_male_adult_37_years	chr1	226542738	226542739	226542738	-	High_confidence	56	58	69	2.403887	4.972240	chr1	226542461	226543018	LTR|ERVL|LTR66	-	chr1	226537254	226542712	STRG.6059.1	-	226537254,226542638	226538699,226542712	0.826087
gastrocnemius_medialis_male_adult_37_years	chr10	113623544	113623627	113623570	-	RAMPAGE_only	14	14	155	5.400036	6.089952	chr10	113623541	113623581	LINE|RTE-X|L4_B_Mam	+	chr10	113588715	113664046	NRAP|ENST00000369360.7	-	113588715,113589665,113590577,113592193,113595622,113597085,113597968,113604608,113605761,113606177,113608413,113610458,113612233,113614182,113614838,113615711,113617454,113620603,113621868,113623528,113624825,113626046,113628916,113629587,113631508,113631852,113633083,113634111,113640226,113641364,113645824,113646922,113650036,113650437,113651802,113652934,113654020,113657469,113662678,113663351,113663810	113589079,113589797,113590889,113592301,113595727,113597184,113598073,113604920,113605869,113606282,113608512,113610563,113612431,113614296,113614946,113615816,113617553,113620708,113622180,113623636,113624930,113626145,113629021,113629785,113631630,113631964,113633188,113634210,113640331,113641472,113645941,113647027,113650141,113650545,113651907,113653039,113654125,113657574,113662766,113663446,113664046	0.987097
gastrocnemius_medialis_male_adult_37_years	chr12	110936582	110936585	110936584	+	High_confidence	195	353	453	15.782040	6.573058	chr12	110936431	110936780	LTR|ERVL-MaLR|THE1D	+	chr12	110936601	110937451	LINC01405|ENST00000331096.2	+	110936601,110937184	110936698,110937451	0.640177
gastrocnemius_medialis_male_adult_37_years	chr19	18013364	18013425	18013424	+	RAMPAGE_only	3	3	22	0.766457	4.121928	chr19	18013258	18013441	LINE|L2|L2c	-	chr19	18008169	18014100	ARRDC2|ENST00000593460.1	+	18008169,18012912	18010729,18014100	0.863636
gastrocnemius_medialis_male_adult_37_years	chr3	126197910	126197911	126197910	-	High_confidence	17	17	18	0.627101	3.969816	chr3	126197802	126198236	LTR|ERV1|MER57A1	-	chr3	126158597	126197941	ALDH1L1|ENST00000511283.2	-	126158597,126159382,126160852,126197734	126158639,126159566,126161002,126197941	0.555556
gastrocnemius_medialis_male_adult_37_years	chr2	75641901	75641917	75641911	+	RAMPAGE_only	75	77	279	9.720065	6.325336	chr2	75641589	75641934	LTR|ERVL-MaLR|MLT1F2	-	chr2	75646782	75657860	MRPL19|ENST00000393909.6	+	75646782,75647101,75652141,75652522,75654735,75655063	75646910,75647219,75652260,75652657,75654917,75657860	0.835125
gastrocnemius_medialis_male_adult_37_years	chr22	19456897	19456919	19456897	-	RAMPAGE_only	3	3	6	0.209034	2.584963	chr22	19456874	19456946	LINE|CR1|L3	+	chr22	19443370	19478982	STRG.75306.5	-	19443370,19447377,19447664,19454748,19455679,19456586,19456852,19458070,19465201,19467872,19471686,19475067,19475469,19478633	19444390,19447545,19450744,19454830,19455768,19456634,19456918,19458139,19465274,19468003,19471808,19475100,19475602,19478982	1.000000
gastrocnemius_medialis_male_adult_37_years	chr6	54168419	54168717	54168580	+	RAMPAGE_only	12	12	172	5.992298	4.726136	chr6	54168174	54168642	LINE|L2|L2a	+	chr6	54018999	54266277	STRG.29913.6	+	54018999,54121446,54124472,54136714,54149055,54160366,54160515,54160739,54189869,54230713,54257307	54019091,54121602,54124865,54138286,54149127,54160432,54160599,54169572,54202233,54230917,54266277	0.982558
gastrocnemius_medialis_male_adult_37_years	chr8	134756503	134756512	134756511	+	High_confidence	3	4	7	0.243873	2.521641	chr8	134756528	134756780	LTR|ERVL|LTR16	+	chr8	134756538	134765006	STRG.40057.1	+	134756538,134756736,134764763	134756647,134756888,134765006	0.857143
gastrocnemius_medialis_male_adult_37_years	chr19	50451918	50451991	50451934	+	RAMPAGE_only	14	14	104	3.623250	5.785588	chr19	50451832	50451941	DNA|hAT-Ac|OldhAT1	-	chr19	50432902	50466321	MYBPC2|ENST00000357701.5	+	50432902,50435160,50435775,50436011,50436616,50437472,50437658,50440879,50442180,50443493,50443710,50445879,50448224,50450828,50451279,50451863,50454019,50454264,50455107,50455509,50458586,50458917,50459110,50460039,50461541,50461899,50464345,50466194	50432972,50435250,50435862,50436160,50436734,50437521,50437718,50441076,50442313,50443618,50443816,50446052,50448390,50450935,50451309,50452003,50454179,50454369,50455296,50455644,50458754,50459006,50459306,50460179,50461701,50462036,50464532,50466321	0.990385
gastrocnemius_medialis_male_adult_37_years	chr4	184804523	184804555	184804554	-	RAMPAGE_only	12	17	52	1.811625	4.758127	chr4	184804298	184804602	SINE|Alu|AluSx1	+	chr4	184755594	184805788	ACSL1|NM_001286710.1	-	184755594,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621,184768315,184770254,184773080,184773662,184773842,184776483,184776883,184780331,184783926,184788616,184803319,184805526	184757265,184757706,184757920,184760500,184762523,184763255,184764925,184765986,184766756,184768450,184770332,184773154,184773714,184773875,184776662,184776983,184780433,184783991,184788731,184803546,184805788	0.923077
gastrocnemius_medialis_male_adult_37_years	chr11	47486749	47486764	47486749	-	High_confidence	1	1	8	0.278712	2.521641	chr11	47486415	47486707	SINE|Alu|AluSz6	-	chr11	47477295	47486799	CELF1|ENST00000422993.2	-	47477295,47478876,47482694,47484388,47486749	47477425,47478952,47482856,47484523,47486799	0.875000
gastrocnemius_medialis_male_adult_37_years	chr15	66401878	66401879	66401878	+	RAMPAGE_only	21	21	26	0.905812	4.363713	chr15	66401474	66401958	LINE|L2|L2c	-	chr15	66386872	66491544	MAP2K1|NM_002755.3	+	66386872,66435026,66436745,66443279,66444655,66481754,66484989,66487227,66489214,66489717,66490501	66387427,66435237,66436892,66443357,66444707,66481879,66485191,66487292,66489276,66489763,66491544	1.000000
gastrocnemius_medialis_male_adult_37_years	chr4	104907339	104907340	104907339	+	RAMPAGE_only	13	13	15	0.522584	3.773557	chr4	104907196	104907543	LTR|ERVL-MaLR|MLT1I	+	chr4	104973711	105120000	AC096577.1|ENST00000506386.1	+	104973711,105061226,105116828,105119868	104973782,105061474,105116918,105120000	0.533333
gastrocnemius_medialis_male_adult_37_years	chr17	20956293	20956316	20956293	+	RAMPAGE_only	2	4	10	0.348389	3.121928	chr17	20956199	20956298	LTR|ERVL|LTR67B	-	chr17	20951430	21002276	CCDC144NL-AS1|ENST00000581958.5	+	20951430,20955965,20956633,20958301,20981486,21001882	20951521,20956353,20956709,20958402,20981624,21002276	0.600000
gastrocnemius_medialis_male_adult_37_years	chr11	74071070	74071073	74071072	-	High_confidence	26	49	60	2.090336	5.126837	chr11	74070756	74071175	LINE|L2|L2c	+	chr11	74049518	74070869	C2CD3|ENST00000542484.1	-	74049518,74054606,74057405,74070505	74049542,74054671,74057544,74070869	0.766667
gastrocnemius_medialis_male_adult_37_years	chr21	28090339	28090410	28090339	+	High_confidence	22	23	83	2.891632	3.798297	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.951807
gastrocnemius_medialis_male_adult_37_years	chr3	125618104	125618121	125618105	+	High_confidence	15	38	87	3.030988	5.391703	chr3	125616037	125618743	LTR|ERVL|HERVL-int	+	chr3	125617717	125619250	STRG.17052.1	+	125617717	125619250	0.977011
gastrocnemius_medialis_male_adult_37_years	chr5	151434912	151434953	151434952	+	High_confidence	3	3	16	0.557423	3.773557	chr5	151434956	151435860	LINE|L1|L1MEg	+	chr5	151434769	151435608	STRG.27625.1	+	151434769	151435608	0.812500
gastrocnemius_medialis_male_adult_37_years	chr5	180830987	180831032	180831009	+	High_confidence	19	19	79	2.752276	5.676303	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.835443
gastrocnemius_medialis_male_adult_37_years	chr1	225701035	225701058	225701035	+	High_confidence	2	2	15	0.522584	2.692381	chr1	225700876	225701240	LTR|ERVL-MaLR|MLT1L	-	chr1	225700663	225723055	STRG.6014.1	+	225700663,225710502,225716045,225722749	225701106,225710568,225718702,225723055	0.933333
gastrocnemius_medialis_male_adult_37_years	chr20	45833251	45833252	45833251	-	High_confidence	380	381	498	17.349793	4.974373	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.979920
gastrocnemius_medialis_male_adult_37_years	chr4	11336703	11336704	11336703	+	RAMPAGE_only	6	6	8	0.278712	2.500000	chr4	11336585	11336947	LTR|ERVL-MaLR|MLT1O	+	chr4	11344001	11349070	STRG.19997.1	+	11344001	11349070	0.625000
gastrocnemius_medialis_male_adult_37_years	chr3	197270729	197270747	197270746	-	RAMPAGE_only	3	3	8	0.278712	2.807355	chr3	197270139	197271061	LINE|L1|L1MC5a	+	chr3	197140144	197260461	DLG1|ENST00000453607.5	-	197140144,197142717,197194424,197260258	197140264,197142768,197194589,197260461	0.500000
gastrocnemius_medialis_male_adult_37_years	chr16	8842144	8842167	8842153	+	High_confidence	13	14	29	1.010329	3.884155	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.827586
gastrocnemius_medialis_male_adult_37_years	chr20	20089126	20089191	20089190	-	High_confidence	94	104	492	17.140759	6.552838	chr20	20089169	20089434	SINE|MIR|MIRb	+	chr20	20078729	20089233	STRG.72916.8	-	20078729	20089233	0.985772
gastrocnemius_medialis_male_adult_37_years	chr3	57267779	57267782	57267779	+	RAMPAGE_only	3	3	9	0.313550	2.725481	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.777778
gastrocnemius_medialis_male_adult_37_years	chr2	53881511	53881515	53881511	-	High_confidence	3	4	8	0.278712	3.000000	chr2	53881455	53881602	SINE|MIR|MIRb	-	chr2	53866147	53881508	PSME4|ENST00000466539.1	-	53866147,53866746,53874338,53875626,53881455	53866223,53866880,53874494,53875755,53881508	0.875000
gastrocnemius_medialis_male_adult_37_years	chr3	155294069	155294073	155294069	-	High_confidence	2	2	6	0.209034	2.584963	chr3	155293994	155294195	SINE|MIR|MIRb	+	chr3	155290228	155293775	DWORF|ENST00000489090.1	-	155290228,155290939,155293619	155290846,155291038,155293775	0.833333
gastrocnemius_medialis_male_adult_37_years	chr17	21075853	21075856	21075855	+	High_confidence	13	21	23	0.801296	3.880180	chr17	21075733	21075870	LINE|L2|L2a	-	chr17	21075555	21090615	LINC01563|ENST00000456235.1	+	21075555,21090267	21075957,21090615	0.695652
gastrocnemius_medialis_male_adult_37_years	chr17	4143196	4143215	4143199	+	High_confidence	96	104	209	7.281339	5.802492	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.971292
gastrocnemius_medialis_male_adult_37_years	chr2	26128236	26128262	26128237	+	RAMPAGE_only	5	8	16	0.557423	3.500000	chr2	26128071	26128402	DNA|hAT-Charlie|MER1B	-	chr2	26034109	26137454	RAB10|ENST00000264710.4	+	26034109,26098661,26109767,26127143,26127849,26134937	26034735,26098722,26109906,26127233,26127951,26137454	1.000000
gastrocnemius_medialis_male_adult_37_years	chr2	11755739	11755753	11755745	+	RAMPAGE_only	4	5	11	0.383228	3.121928	chr2	11755720	11756020	SINE|Alu|AluSc8	-	chr2	11746633	11767858	LPIN1|ENST00000441684.5	+	11746633,11763022,11765532,11767762	11746671,11763286,11765733,11767858	0.636364
gastrocnemius_medialis_male_adult_37_years	chrX	53220871	53220898	53220886	-	RAMPAGE_only	2	2	9	0.313550	3.000000	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	0.888889
gastrocnemius_medialis_male_adult_37_years	chr1	31376356	31376357	31376356	-	High_confidence	201	203	203	7.072305	4.856736	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365720	31376357	STRG.958.3	-	31365720,31367392,31369384,31372941,31376355	31365939,31367494,31369557,31373041,31376357	0.980296
gastrocnemius_medialis_male_adult_37_years	chr2	55618850	55618904	55618850	-	High_confidence	13	14	32	1.114846	4.760648	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.937500
gastrocnemius_medialis_male_adult_37_years	chr2	177888742	177888756	177888742	-	High_confidence	12	12	45	1.567752	5.124093	chr2	177888663	177888891	LTR|ERVL|LTR40c	+	chr2	177623248	177888739	PDE11A|NM_001077196.1	-	177623248,177663865,177669492,177675454,177680825,177697331,177701120,177711768,177727657,177728025,177769322,177816828,177817857,177820219,177840250,177875858,177888618	177629562,177663949,177669567,177675518,177680903,177697432,177701211,177711878,177727765,177728172,177769373,177816921,177817925,177820295,177840383,177875923,177888739	0.866667
gastrocnemius_medialis_male_adult_37_years	chr10	95273507	95273516	95273515	-	High_confidence	5	6	10	0.348389	3.169925	chr10	95273485	95273544	SINE|MIR|MIR3	+	chr10	95263875	95273406	PDLIM1|ENST00000493949.1	-	95263875,95268777,95271632,95273036	95264063,95268862,95271784,95273406	0.700000
gastrocnemius_medialis_male_adult_37_years	chr1	6208681	6208682	6208681	-	High_confidence	41	41	41	1.428397	3.338750	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.975610
gastrocnemius_medialis_male_adult_37_years	chr1	31384683	31384690	31384689	-	RAMPAGE_only	10	10	26	0.905812	4.056021	chr1	31384617	31384742	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.884615
gastrocnemius_medialis_male_adult_37_years	chr6	125214241	125214248	125214247	+	RAMPAGE_only	19	23	45	1.567752	5.013858	chr6	125213832	125214305	LTR|ERVL|LTR33	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.622222
gastrocnemius_medialis_male_adult_37_years	chr20	3795750	3795835	3795750	+	High_confidence	4	4	29	1.010329	4.254196	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
gastrocnemius_medialis_male_adult_37_years	chr1	230856036	230856049	230856036	-	High_confidence	20	20	59	2.055498	4.663426	chr1	230855985	230856233	SINE|MIR|MIRb	+	chr1	230837118	230856036	C1orf198|NM_001136495.1	-	230837118,230843353,230855667,230855877	230839908,230843896,230855718,230856036	0.932203
gastrocnemius_medialis_male_adult_37_years	chr6	111387777	111387801	111387800	-	RAMPAGE_only	5	6	13	0.452906	2.792481	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.615385
gastrocnemius_medialis_male_adult_37_years	chr2	86482561	86482578	86482577	+	RAMPAGE_only	5	5	10	0.348389	3.121928	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.900000
gastrocnemius_medialis_male_adult_37_years	chr12	45292685	45292722	45292685	+	High_confidence	32	40	135	4.703257	5.940467	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.881481
gastrocnemius_medialis_male_adult_37_years	chr1	201427175	201427176	201427175	-	RAMPAGE_only	89	89	89	3.100666	5.718609	chr1	201427119	201427295	SINE|MIR|MIR	-	chr1	201408863	201429866	TNNI1|ENST00000336092.8	-	201408863,201410325,201411356,201413031,201414517,201415212,201417115,201417782,201421672,201427174,201428837,201429698	201409250,201410435,201411533,201413121,201414649,201415254,201417119,201417812,201421726,201427293,201429274,201429866	0.977528
gastrocnemius_medialis_male_adult_37_years	chr16	14341784	14341785	14341784	-	High_confidence	150	155	172	5.992298	5.809218	chr16	14341597	14341966	LTR|ERVL-MaLR|THE1B	-	chr16	14323552	14341775	STRG.64609.1	-	14323552,14341696	14323924,14341775	0.965116
gastrocnemius_medialis_male_adult_37_years	chr13	32527409	32527422	32527409	-	RAMPAGE_only	2	5	10	0.348389	2.846439	chr13	32527156	32527383	SINE|MIR|MIRc	-	chr13	32432830	32522275	N4BP2L2|ENST00000509076.1	-	32432830,32436360,32438651,32442387,32517856,32521372	32432972,32436405,32438737,32444124,32518003,32522275	0.900000
gastrocnemius_medialis_male_adult_37_years	chr4	3112862	3112864	3112863	+	High_confidence	4	6	9	0.313550	3.169925	chr4	3112259	3112985	LINE|L1|L1ME3A	-	chr4	3112863	3115445	HTT|ENST00000648150.1	+	3112863,3115303	3113052,3115445	0.777778
gastrocnemius_medialis_male_adult_37_years	chr3	81499396	81499460	81499423	-	RAMPAGE_only	2	2	18	0.627101	3.969816	chr3	81499377	81499650	LINE|CR1|L3	-	chr3	81489932	81743629	GBE1|ENST00000489715.1	-	81489932,81499109,81535194,81536910,81577924,81581164,81586091,81591036,81593907,81642780,81646391,81648855,81649795,81670837,81705443,81743556	81490463,81499227,81535325,81537095,81578096,81581275,81586190,81591164,81594023,81642990,81646482,81648991,81649921,81670953,81705613,81743629	0.555556
gastrocnemius_medialis_male_adult_37_years	chr18	34709369	34709374	34709373	+	High_confidence	3	3	6	0.209034	2.584963	chr18	34709150	34709395	LINE|L2|L2c	-	chr18	34709355	34812056	DTNA|ENST00000585446.1	+	34709355,34794036,34806218,34811958	34709517,34794250,34806304,34812056	0.666667
gastrocnemius_medialis_male_adult_37_years	chr20	20088950	20088970	20088950	-	High_confidence	4	4	20	0.696779	3.984184	chr20	20088660	20089017	LINE|RTE-X|L4_B_Mam	-	chr20	20078729	20089233	STRG.72916.8	-	20078729	20089233	0.950000
gastrocnemius_medialis_male_adult_37_years	chr9	68975836	68975849	68975845	-	High_confidence	5	5	20	0.696779	3.826875	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.500000
gastrocnemius_medialis_male_adult_37_years	chr19	5680240	5680262	5680240	-	High_confidence	11	11	24	0.836135	4.168296	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.958333
gastrocnemius_medialis_male_adult_37_years	chr18	9255245	9255317	9255316	+	RAMPAGE_only	5	5	35	1.219363	4.629004	chr18	9255173	9255383	LINE|L1|L1MEg	+	chr18	9216779	9256111	ANKRD12|ENST00000359158.7	+	9216779,9221851,9239476,9254210	9216900,9221999,9239556,9256111	0.971429
gastrocnemius_medialis_male_adult_37_years	chr14	90733370	90733384	90733383	-	RAMPAGE_only	3	4	11	0.383228	3.459432	chr14	90733163	90733377	SINE|MIR|MIRb	-	chr14	90689635	90786237	TTC7B|ENST00000557766.1	-	90689635,90695499,90699157,90730074,90744791,90780737,90786173	90689712,90695578,90699223,90730196,90744922,90780906,90786237	0.909091
gastrocnemius_medialis_male_adult_37_years	chr1	46804354	46804355	46804354	+	RAMPAGE_only	8	8	11	0.383228	2.646439	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.909091
gastrocnemius_medialis_male_adult_37_years	chr9	34233920	34233921	34233920	+	RAMPAGE_only	649	660	736	25.641461	7.070677	chr9	34233518	34234003	LINE|L2|L2a	-	chr9	34220438	34252522	UBAP1|ENST00000359544.2	+	34220438,34220907,34234215,34241184,34249778,34250657,34251391	34220467,34220948,34234340,34242108,34249961,34250759,34252522	0.979620
gastrocnemius_medialis_male_adult_37_years	chr11	65438618	65438805	65438659	+	RAMPAGE_only	26	31	322	11.218139	5.634503	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65437268	65444557	STRG.49355.6	+	65437268,65444327	65444302,65444557	0.990683
gastrocnemius_medialis_male_adult_37_years	chr8	140898316	140898322	140898321	-	RAMPAGE_only	13	13	20	0.696779	3.746439	chr8	140898046	140898347	DNA|hAT-Charlie|MER5C	-	chr8	140658388	140890768	PTK2|ENST00000519654.5	-	140658388,140664916,140668268,140674297,140675459,140686631,140700890,140706118,140717597,140735250,140739017,140743229,140744651,140746759,140752231,140761164,140764233,140789473,140793353,140800458,140803542,140818276,140818879,140830471,140846259,140846598,140864311,140879470,140890542	140659678,140664997,140668424,140674404,140675499,140686694,140701022,140706205,140717709,140735455,140739107,140743330,140744767,140746860,140752316,140761262,140764290,140789526,140793384,140800576,140803650,140818354,140819020,140830526,140846322,140846678,140864399,140879637,140890768	0.900000
gastrocnemius_medialis_male_adult_37_years	chr20	56367491	56367511	56367491	+	RAMPAGE_only	3	3	9	0.313550	2.750000	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	0.888889
gastrocnemius_medialis_male_adult_37_years	chr2	224973815	224973816	224973815	+	High_confidence	4	5	6	0.209034	2.584963	chr2	224973725	224973860	SINE|MIR|MIR	-	chr2	224973859	224974785	STRG.12898.1	+	224973859,224973969	224973879,224974785	0.500000
gastrocnemius_medialis_male_adult_37_years	chr8	61662077	61662083	61662082	-	RAMPAGE_only	3	4	11	0.383228	3.121928	chr8	61661699	61662482	DNA|TcMar-Tigger|Tigger18a	+	chr8	61637968	61689699	STRG.38501.7	-	61637968,61638321,61642887,61643385,61643944,61644599,61646749,61651049,61653567,61664114,61668233,61680967,61684038,61689672	61638003,61638363,61642920,61643433,61644001,61644632,61646878,61651124,61664030,61665606,61668275,61681036,61684188,61689699	0.909091
gastrocnemius_medialis_male_adult_37_years	chr19	38376013	38376033	38376013	+	RAMPAGE_only	131	131	492	17.140759	6.129847	chr19	38375972	38376110	SINE|MIR|MIR	-	chr19	38374758	38383824	PSMD8|ENST00000602911.5	+	38374758,38376159,38376351,38379239,38380898,38382116,38383252	38374961,38376232,38376454,38379405,38380999,38382228,38383824	0.967480
gastrocnemius_medialis_male_adult_37_years	chr3	9973632	9973664	9973632	-	RAMPAGE_only	4	4	25	0.870974	4.023137	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.920000
gastrocnemius_medialis_male_adult_37_years	chr6	73169447	73169448	73169447	+	RAMPAGE_only	18	18	25	0.870974	3.813661	chr6	73169288	73169503	SINE|tRNA-RTE|MamSINE1	+	chr6	72622171	73195454	KCNQ5|ENST00000629977.2	+	72622171,73003907,73041935,73077321,73077761,73105256,73111307,73120482,73133420,73169745,73190572,73192564,73194451	72622587,73003998,73042062,73077497,73077887,73105367,73111403,73120577,73133641,73169854,73190704,73192691,73195454	0.840000
gastrocnemius_medialis_male_adult_37_years	chr12	77980141	77980142	77980141	+	RAMPAGE_only	39	39	55	1.916142	4.590187	chr12	77979813	77980297	LTR|ERV1|LOR1a	-	chr12	77966275	78006766	NAV3|ENST00000550503.1	+	77966275,77968518,77998336,78006418	77966301,77968702,77998476,78006766	0.945455
gastrocnemius_medialis_male_adult_37_years	chr5	96934357	96934372	96934357	+	RAMPAGE_only	2	2	9	0.313550	2.947703	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	1.000000
gastrocnemius_medialis_male_adult_37_years	chr11	58578123	58578145	58578123	-	High_confidence	6	6	30	1.045168	4.307355	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.733333
gastrocnemius_medialis_male_adult_37_years	chr7	7689193	7689239	7689215	+	RAMPAGE_only	21	21	127	4.424546	5.967279	chr7	7689061	7689544	LTR|ERVL-MaLR|MLT1L	+	chr7	7718999	7722150	STRG.32920.10	+	7718999	7722150	0.590551
gastrocnemius_medialis_male_adult_37_years	chr2	53936094	53936131	53936105	-	RAMPAGE_only	3	4	19	0.661940	3.503258	chr2	53935897	53936066	SINE|Alu|AluSx1	-	chr2	53887416	53970778	STRG.8420.5	-	53887416,53888720,53890103,53892807,53893673,53895006,53895582,53896803,53897869,53898300,53899880,53901349,53904024,53906597,53906805,53908319,53908509,53908783,53910074,53919150,53920192,53920888,53922516,53923048,53923320,53925538,53925958,53927393,53928116,53931834,53932667,53934604,53936086,53936763,53937390,53939955,53948420,53949142,53970542	53887989,53888812,53890208,53892960,53893799,53895076,53895736,53896885,53897999,53898354,53900017,53901559,53904156,53906693,53906868,53908418,53908565,53908840,53910130,53919246,53920350,53921104,53922584,53923118,53923419,53925689,53926023,53927483,53928303,53932100,53932760,53934727,53936161,53936827,53937540,53940000,53948537,53949283,53970778	0.842105
gastrocnemius_medialis_male_adult_37_years	chr2	201116007	201116034	201116007	+	High_confidence	3	3	10	0.348389	2.646439	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	1.000000
gastrocnemius_medialis_male_adult_37_years	chr8	80485592	80485655	80485592	+	High_confidence	20	21	41	1.428397	5.016089	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.707317
gastrocnemius_medialis_male_adult_37_years	chr1	51796114	51796154	51796114	+	RAMPAGE_only	3	3	12	0.418067	2.584963	chr1	51795902	51796180	SINE|Alu|AluJo	-	chr1	51772075	51796711	STRG.1759.7	+	51772075,51772604,51776832,51781163,51782558,51783914,51784263,51784441,51785807,51787352,51787714	51772182,51772723,51776918,51781335,51782643,51784025,51784327,51784582,51786617,51787488,51796711	0.833333
gastrocnemius_medialis_male_adult_37_years	chr8	99893471	99893492	99893471	-	High_confidence	7	9	26	0.905812	4.022055	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.923077
gastrocnemius_medialis_male_adult_37_years	chr5	151434750	151434823	151434822	+	High_confidence	26	28	173	6.027137	5.779262	chr5	151434626	151434950	LTR|ERVL-MaLR|MLT1A0	+	chr5	151434769	151435608	STRG.27625.1	+	151434769	151435608	0.976879
gastrocnemius_medialis_male_adult_37_years	chr5	134632150	134632167	134632166	+	High_confidence	5	5	15	0.522584	3.323231	chr5	134631917	134632237	SINE|Alu|AluY	+	chr5	134632065	134644455	STRG.26874.1	+	134632065,134644064	134632425,134644455	0.866667
gastrocnemius_medialis_male_adult_37_years	chr12	10702444	10702514	10702513	-	High_confidence	7	8	33	1.149685	3.887199	chr12	10702238	10702535	SINE|Alu|AluSz	+	chr12	10699316	10702475	YBX3|ENST00000540975.5	-	10699316,10701253,10701959,10702411	10699654,10701353,10702134,10702475	0.969697
gastrocnemius_medialis_male_adult_37_years	chr15	33194708	33194715	33194708	-	High_confidence	4	4	8	0.278712	2.521641	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.875000
gastrocnemius_medialis_male_adult_37_years	chr9	126816019	126816020	126816019	+	RAMPAGE_only	6	6	8	0.278712	2.521641	chr9	126814819	126816077	LINE|L1|L1MEc	-	chr9	126805032	126833096	ZBTB43|ENST00000450858.1	+	126805032,126832486	126805132,126833096	0.875000
gastrocnemius_medialis_male_adult_37_years	chr9	39809793	39809914	39809864	-	High_confidence	9	9	54	1.881303	4.807457	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803656	39810013	STRG.41479.2	-	39803656,39809485,39809730	39803859,39809615,39810013	0.740741
gastrocnemius_medialis_male_adult_37_years	chr2	177888673	177888704	177888703	-	High_confidence	7	7	21	0.731618	4.297079	chr2	177888663	177888891	LTR|ERVL|LTR40c	+	chr2	177629245	177888738	PDE11A|ENST00000389683.7	-	177629245,177663865,177669492,177675454,177680825,177697331,177701120,177711768,177727657,177728025,177769322,177816828,177817857,177820219,177840250,177875858,177888618	177629562,177663949,177669567,177675518,177680903,177697432,177701211,177711878,177727765,177728172,177769373,177816921,177817925,177820295,177840383,177875923,177888738	0.714286
gastrocnemius_medialis_male_adult_37_years	chr2	140786066	140786067	140786066	-	RAMPAGE_only	11	11	12	0.418067	2.913977	chr2	140785621	140786177	LINE|L2|L2c	+	chr2	140231422	142131701	LRP1B|ENST00000389484.7	-	140231422,140234785,140238151,140239441,140247085,140270241,140274423,140297807,140314934,140321962,140323892,140325761,140334452,140335614,140350796,140352952,140356341,140357978,140358820,140364660,140370709,140371178,140373007,140378179,140385892,140442503,140444329,140444562,140450567,140456454,140457462,140475137,140485342,140487616,140492607,140495564,140501686,140502962,140506795,140509927,140514652,140516888,140525843,140526236,140534020,140536580,140540972,140541778,140598630,140601449,140700249,140701720,140702140,140702426,140715972,140716681,140769212,140770880,140776097,140813656,140839990,140840917,140850101,140851651,140867589,140868098,140883816,140886137,140902919,140907876,140922964,140950234,140951859,140982159,140989531,140993994,141005334,141013555,141015695,141019921,141048985,141055115,141058882,141062050,141188420,141229182,141247225,141254521,141480395,141810278,142130647	140233326,140234884,140238296,140239532,140247162,140270346,140274598,140297969,140315099,140322088,140324066,140325878,140334559,140335838,140351038,140353072,140356476,140358116,140358946,140364783,140370842,140371285,140373137,140378286,140386009,140442623,140444449,140444679,140450661,140456603,140457651,140475337,140485524,140487739,140492693,140495748,140501874,140503103,140506918,140510056,140514772,140517011,140525993,140526350,140534140,140536709,140541098,140541971,140598835,140601639,140700621,140701845,140702292,140702553,140716102,140716816,140769344,140771006,140776238,140813806,140840085,140841092,140850329,140851783,140867834,140868263,140884021,140886335,140903165,140908077,140923147,140950402,140951940,140982276,140989657,140994135,141005457,141013745,141015915,141020102,141049222,141055259,141059054,141062273,141188583,141229440,141247354,141254641,141480533,141810401,142131701	0.916667
gastrocnemius_medialis_male_adult_37_years	chr1	39026177	39026205	39026190	+	High_confidence	3	3	13	0.452906	3.188722	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.923077
gastrocnemius_medialis_male_adult_37_years	chr2	229232042	229232054	229232053	-	High_confidence	7	7	13	0.452906	3.392747	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	1.000000
gastrocnemius_medialis_male_adult_37_years	chr1	179985165	179985187	179985165	+	RAMPAGE_only	3	3	8	0.278712	3.000000	chr1	179984981	179985507	LINE|L1|L1MB3	-	chr1	179986181	180048705	STRG.4962.2	+	179986181,179987242,179990506,179992061,179996552,180003173,180006453,180011928,180013846,180015848,180019948,180022697,180024418,180031319,180033861,180036925,180041137,180041661,180043055,180044050,180048535	179986254,179987286,179990621,179992221,179997175,180003287,180006567,180012075,180014505,180015970,180021009,180022848,180024582,180031494,180034082,180037089,180041248,180041802,180043192,180044173,180048705	1.000000
gastrocnemius_medialis_male_adult_37_years	chr14	50756877	50756904	50756877	-	RAMPAGE_only	2	3	7	0.243873	2.807355	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
gastrocnemius_medialis_male_adult_37_years	chr18	46087114	46087119	46087114	-	High_confidence	2	2	7	0.243873	2.584963	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.714286
gastrocnemius_medialis_male_adult_37_years	chr2	45192665	45192666	45192665	-	High_confidence	5	6	8	0.278712	2.521641	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45187169	45192285	LINC01121|ENST00000454673.1	-	45187169,45192139	45189249,45192285	0.625000
gastrocnemius_medialis_male_adult_37_years	chr12	21842314	21842327	21842314	-	RAMPAGE_only	2	2	7	0.243873	2.584963	chr12	21841951	21842271	DNA|TcMar-Tigger|MER2B	-	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	0.714286
gastrocnemius_medialis_male_adult_37_years	chr12	101660926	101660954	101660953	+	RAMPAGE_only	2	3	11	0.383228	3.321928	chr12	101660649	101661015	LTR|ERVL-MaLR|THE1B	-	chr12	101595070	101684395	MYBPC1|ENST00000550270.1	+	101595070,101614495,101617201,101629433,101631570,101632020,101634553,101636671,101642418,101644663,101646762,101648044,101649259,101651230,101652677,101653114,101659671,101661157,101662357,101663425,101666743,101667731,101670320,101673426,101675291,101677234,101678101,101680342,101684381	101595095,101614531,101617243,101629544,101631719,101632138,101634605,101636728,101642585,101644796,101646887,101648150,101649426,101651393,101652784,101653248,101659831,101661262,101662546,101663560,101666797,101667899,101670409,101673622,101675431,101677394,101678238,101680529,101684395	0.727273
gastrocnemius_medialis_male_adult_37_years	chr19	9140390	9140428	9140390	+	High_confidence	6	6	33	1.149685	4.741364	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.848485
gastrocnemius_medialis_male_adult_37_years	chr7	98329491	98329507	98329491	-	RAMPAGE_only	4	4	8	0.278712	2.750000	chr7	98329147	98330304	LINE|L1|L1MCa	+	chr7	98317236	98355426	BAIAP2L1|ENST00000473569.1	-	98317236,98320057,98320236,98355041	98317356,98320129,98320298,98355426	0.875000
gastrocnemius_medialis_male_adult_37_years	chr10	65570519	65570522	65570519	+	High_confidence	3	3	7	0.243873	2.584963	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570451	65615757	LINC01515|ENST00000601979.5	+	65570451,65572934,65585484,65585664,65615635	65570545,65573056,65585567,65585802,65615757	0.571429
gastrocnemius_medialis_male_adult_37_years	chr22	41471825	41471848	41471825	+	RAMPAGE_only	5	7	18	0.627101	3.302723	chr22	41471830	41472060	SINE|MIR|MIR	+	chr22	41469159	41511966	ACO2|ENST00000471094.1	+	41469159,41507790,41511875	41469508,41508049,41511966	0.777778
gastrocnemius_medialis_male_adult_37_years	chr17	16849966	16850020	16850011	-	High_confidence	7	8	32	1.114846	4.812500	chr17	16849983	16850107	LINE|L2|L2c	+	chr17	16847634	16850148	STRG.66832.1	-	16847634,16848096,16849200,16849669,16849920	16847938,16848245,16849421,16849784,16850148	0.937500
gastrocnemius_medialis_male_adult_37_years	chr10	103133170	103133171	103133170	+	High_confidence	9	9	10	0.348389	3.169925	chr10	103132990	103133273	LTR|ERVL-MaLR|THE1B	+	chr10	103133229	103135927	STRG.47019.1	+	103133229	103135927	0.900000
gastrocnemius_medialis_male_adult_37_years	chr3	25737344	25737378	25737344	-	High_confidence	2	3	9	0.313550	2.750000	chr3	25737106	25737338	SINE|MIR|MIRb	-	chr3	25719278	25736346	NGLY1|ENST00000496726.5	-	25719278,25720013,25729132,25733871	25719635,25720191,25729318,25736346	0.555556
gastrocnemius_medialis_male_adult_37_years	chr5	150651135	150651614	150651371	+	RAMPAGE_only	28	29	435	15.154939	6.825444	chr5	150651250	150651383	SINE|MIR|MIR3	+	chr5	150640677	150652337	SYNPO|ENST00000519664.1	+	150640677,150647943	150640854,150652337	0.990805
gastrocnemius_medialis_male_adult_37_years	chr2	54966281	54966283	54966282	+	RAMPAGE_only	28	41	57	1.985820	5.407575	chr2	54966080	54966355	LINE|L2|L2c	-	chr2	54954033	54971318	EML6|ENST00000490828.5	+	54954033,54957789,54959103,54960219,54962522,54963985,54964570,54966722,54966999,54968127,54968667,54970070	54954156,54957998,54959261,54960334,54962711,54964158,54964733,54966880,54967231,54968281,54968768,54971318	0.859649
gastrocnemius_medialis_male_adult_37_years	chr14	23406135	23406192	23406172	-	RAMPAGE_only	25	25	77	2.682598	4.849443	chr14	23406157	23406209	LINE|RTE-BovB|MamRTE1	+	chr14	23382018	23407592	MYH6|ENST00000356287.3	-	23382018,23382427,23383224,23384441,23384915,23385927,23386314,23387528,23387757,23388154,23388858,23389392,23389592,23390056,23392561,23392911,23393341,23393665,23394067,23396283,23396693,23396962,23397169,23397542,23398727,23400255,23400708,23402463,23402696,23403347,23403714,23404295,23404710,23405099,23405222,23405626,23407022,23407575	23382063,23382562,23383320,23384717,23385041,23386131,23386623,23387653,23387923,23388338,23389055,23389511,23389719,23390446,23392652,23393057,23393518,23393908,23394323,23396420,23396817,23397080,23397257,23397613,23399037,23400426,23400977,23402602,23402800,23403446,23403778,23404388,23404822,23405127,23405379,23405770,23407236,23407592	1.000000
gastrocnemius_medialis_male_adult_37_years	chr2	219419787	219419793	219419787	+	High_confidence	9	9	16	0.557423	3.500000	chr2	219419757	219419880	LINE|L2|L2b	-	chr2	219420044	219423820	DES|ENST00000477226.5	+	219420044,219420250,219420494,219420827,219421339,219423776	219420155,219420346,219420656,219420953,219421560,219423820	0.937500
gastrocnemius_medialis_male_adult_37_years	chr7	131108707	131108708	131108707	-	RAMPAGE_only	17	18	20	0.696779	3.787144	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944159	131109916	LINC-PINT|NR_109854.1	-	130944159,130945719,130984052,131052424,131107719,131109736	130944889,130945791,130984109,131052555,131108803,131109916	0.950000
gastrocnemius_medialis_male_adult_37_years	chrX	11351742	11351743	11351742	-	High_confidence	14	15	19	0.661940	3.892407	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11137543	11351675	STRG.76542.3	-	11137543,11142232,11143979,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11351385	11139530,11142313,11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11351675	0.842105
gastrocnemius_medialis_male_adult_37_years	chr2	151526533	151526545	151526533	-	RAMPAGE_only	4	4	12	0.418067	3.251629	chr2	151526478	151526597	SINE|MIR|MIR	-	chr2	151485340	151583619	NEB|ENST00000413693.5	-	151485340,151489970,151490371,151491682,151492097,151492386,151494160,151496275,151503348,151505477,151506165,151506908,151508004,151512732,151513579,151514317,151514817,151516458,151518317,151518964,151519657,151524310,151524514,151525162,151525957,151526157,151526917,151527480,151529209,151530993,151531791,151534214,151535690,151537131,151537871,151538139,151540343,151540696,151541446,151545887,151546344,151547428,151547633,151548307,151549635,151551737,151552671,151553397,151553827,151554930,151560591,151561003,151561207,151562109,151562610,151563605,151563822,151565043,151565500,151565715,151567167,151568070,151568315,151568617,151569267,151570080,151570496,151575694,151576150,151579337,151580796,151581482,151582463,151583454	151485933,151490077,151490518,151491775,151492281,151492494,151494253,151496368,151503441,151505570,151506258,151507013,151508109,151512837,151513693,151514428,151514928,151516563,151518422,151519069,151519768,151524415,151524616,151525273,151526068,151526262,151527022,151527585,151529314,151531101,151531896,151534319,151535795,151537236,151537976,151538244,151540448,151540801,151541551,151545998,151546443,151547533,151547738,151548415,151549740,151551845,151552776,151553502,151554025,151555044,151560699,151561108,151561312,151562214,151562808,151563719,151563930,151565148,151565605,151565820,151567479,151568178,151568417,151568716,151569372,151570392,151570601,151575799,151576354,151579649,151580904,151581587,151582667,151583619	0.500000
gastrocnemius_medialis_male_adult_37_years	chr6	20334469	20334470	20334469	-	High_confidence	11	12	12	0.418067	3.095795	chr6	20334196	20334750	LTR|ERVL-MaLR|MLT1K	-	chr6	20334143	20334378	STRG.28836.1	-	20334143	20334378	0.666667
gastrocnemius_medialis_male_adult_37_years	chr19	53865343	53865346	53865343	+	High_confidence	3	3	7	0.243873	2.584963	chr19	53865313	53865624	SINE|Alu|AluSx	-	chr19	53865583	53876435	MYADM|NM_001290193.1	+	53865583,53869753,53873527	53865728,53869838,53876435	0.857143
gastrocnemius_medialis_male_adult_37_years	chr17	50165915	50165927	50165923	+	High_confidence	3	4	12	0.418067	2.913977	chr17	50165337	50165958	LINE|L2|L2b	-	chr17	50165984	50175932	SGCA|NR_135553.1	+	50165984,50167367,50167581,50167946,50168373,50169091,50170639,50175256,50175711	50166077,50167487,50167736,50168019,50168572,50169254,50170666,50175449,50175932	0.916667
gastrocnemius_medialis_male_adult_37_years	chr8	134572633	134572677	134572676	-	High_confidence	16	17	48	1.672269	5.136842	chr8	134572592	134572743	DNA|TcMar-Mariner|MARNA	-	chr8	134478392	134572753	STRG.40055.3	-	134478392,134509618,134512474,134520882,134532833,134565332,134572545	134478721,134509749,134512601,134521001,134532972,134565421,134572753	0.854167
gastrocnemius_medialis_male_adult_37_years	chr20	18794077	18794086	18794085	+	High_confidence	48	48	108	3.762606	5.942161	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
gastrocnemius_medialis_male_adult_37_years	chr20	47334128	47334131	47334130	-	RAMPAGE_only	5	8	10	0.348389	2.641604	chr20	47333982	47334311	DNA|TcMar-Tigger|Tigger5b	-	chr20	47211972	47354489	STRG.73506.9	-	47211972,47220257,47221313,47224316,47227202,47229725,47236325,47238757,47246007,47249286,47262287,47276313,47282101,47283570,47287228,47290186,47291795,47294665,47298728,47310055,47347855,47351709	47212725,47220324,47221474,47224556,47227281,47229806,47236516,47239138,47246517,47249439,47262428,47276795,47282217,47283648,47287284,47290274,47291888,47294779,47298947,47310204,47347926,47354489	0.600000
gastrocnemius_medialis_male_adult_37_years	chr4	2867795	2867851	2867850	+	High_confidence	16	16	80	2.787115	5.201319	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
gastrocnemius_medialis_male_adult_37_years	chr8	116648841	116648886	116648847	-	RAMPAGE_only	5	5	34	1.184524	4.314973	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
gastrocnemius_medialis_male_adult_37_years	chr2	174748603	174748804	174748603	-	RAMPAGE_only	13	13	154	5.365197	5.730866	chr2	174748498	174748562	LINE|CR1|L3	-	chr2	174747809	174764412	CHRNA1|ENST00000409542.5	-	174747809,174748579,174749945,174753502,174754218,174759330,174759487,174764351	174748255,174748819,174750169,174753740,174754278,174759375,174759633,174764412	0.519481
gastrocnemius_medialis_male_adult_37_years	chr9	120534000	120534029	120534000	-	RAMPAGE_only	10	10	26	0.905812	4.293661	chr9	120533823	120534313	LINE|L2|L2c	+	chr9	120518599	120532555	CDK5RAP2|ENST00000482047.1	-	120518599,120524985,120527805,120528743,120529977,120532466	120518645,120525078,120527925,120528797,120530140,120532555	0.653846
gastrocnemius_medialis_male_adult_37_years	chr14	80455257	80455292	80455291	+	High_confidence	108	110	260	9.058125	6.814629	chr14	80455279	80455449	LTR|ERVL-MaLR|MLT1J	+	chr14	80455271	80571905	STRG.60353.1	+	80455271,80464769,80471859,80475320,80475840,80497482,80531840,80571703	80455389,80464956,80472020,80475474,80475921,80497590,80532006,80571905	0.569231
gastrocnemius_medialis_male_adult_37_years	chr1	6820197	6820228	6820197	+	RAMPAGE_only	5	6	17	0.592262	2.977217	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.647059
gastrocnemius_medialis_male_adult_37_years	chr17	59620048	59620064	59620048	+	High_confidence	2	3	9	0.313550	3.169925	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.888889
gastrocnemius_medialis_male_adult_37_years	chr12	101660992	101661012	101661011	+	RAMPAGE_only	4	4	14	0.487745	3.324863	chr12	101660649	101661015	LTR|ERVL-MaLR|THE1B	-	chr12	101595070	101684395	MYBPC1|ENST00000550270.1	+	101595070,101614495,101617201,101629433,101631570,101632020,101634553,101636671,101642418,101644663,101646762,101648044,101649259,101651230,101652677,101653114,101659671,101661157,101662357,101663425,101666743,101667731,101670320,101673426,101675291,101677234,101678101,101680342,101684381	101595095,101614531,101617243,101629544,101631719,101632138,101634605,101636728,101642585,101644796,101646887,101648150,101649426,101651393,101652784,101653248,101659831,101661262,101662546,101663560,101666797,101667899,101670409,101673622,101675431,101677394,101678238,101680529,101684395	0.785714
gastrocnemius_medialis_male_adult_37_years	chr1	231365444	231365586	231365444	-	RAMPAGE_only	7	14	75	2.612921	5.035142	chr1	231365439	231365660	SINE|Alu|AluSz6	+	chr1	231363750	231425044	EGLN1|ENST00000366641.3	-	231363750,231367568,231370561,231373979,231420997	231366475,231367636,231370698,231374099,231425044	1.000000
gastrocnemius_medialis_male_adult_37_years	chr4	184804289	184804310	184804289	-	RAMPAGE_only	2	2	7	0.243873	2.807355	chr4	184804266	184804298	SINE|MIR|MIR	+	chr4	184755594	184805788	ACSL1|NM_001286710.1	-	184755594,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621,184768315,184770254,184773080,184773662,184773842,184776483,184776883,184780331,184783926,184788616,184803319,184805526	184757265,184757706,184757920,184760500,184762523,184763255,184764925,184765986,184766756,184768450,184770332,184773154,184773714,184773875,184776662,184776983,184780433,184783991,184788731,184803546,184805788	0.714286
gastrocnemius_medialis_male_adult_37_years	chr17	63976881	63976897	63976896	-	RAMPAGE_only	3	3	8	0.278712	3.000000	chr17	63976743	63977022	LINE|L2|L2-3_Crp	+	chr17	63938553	63972918	SCN4A|ENST00000435607.3	-	63938553,63942825,63943745,63944672,63945006,63945359,63947044,63947889,63948610,63949392,63951423,63957161,63959264,63961192,63963671,63964467,63966101,63966480,63968022,63971161,63971721,63972135,63972351,63972568	63941993,63943096,63943850,63944810,63945060,63945638,63947167,63948063,63948765,63949528,63951900,63957518,63959438,63961431,63963825,63964677,63966243,63966544,63968355,63971253,63971850,63972225,63972470,63972918	0.750000
gastrocnemius_medialis_male_adult_37_years	chrX	19349942	19349964	19349942	+	RAMPAGE_only	2	2	7	0.243873	2.584963	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19343932	19361685	PDHA1|ENST00000422285.6	+	19343932,19349311,19349936,19351280,19353081,19354490,19355348,19355685,19357651,19358915,19359488	19344094,19349371,19350110,19351407,19353173,19354583,19355504,19355757,19357719,19359024,19361685	0.857143
gastrocnemius_medialis_male_adult_37_years	chr3	152317444	152317445	152317444	+	RAMPAGE_only	72	73	104	3.623250	4.806668	chr3	152317330	152317619	SINE|Alu|AluSz	-	chr3	152300197	152459302	MBNL1|ENST00000464596.5	+	152300197,152414940,152432716,152445281,152447619,152459270	152300367,152415111,152432920,152445539,152447773,152459302	0.625000
gastrocnemius_medialis_male_adult_37_years	chr12	10703604	10703605	10703604	-	RAMPAGE_only	5	5	8	0.278712	2.521641	chr12	10703549	10703597	SINE|Alu|AluJo	-	chr12	10699226	10722911	YBX3|ENST00000540447.5	-	10699226,10701253,10701959,10709907,10715693,10718087,10719079,10722849	10699654,10701353,10704148,10713333,10715783,10718121,10719143,10722911	0.875000
gastrocnemius_medialis_male_adult_37_years	chr22	37849301	37849333	37849317	-	High_confidence	6	6	28	0.975490	4.083617	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	1.000000
gastrocnemius_medialis_male_adult_37_years	chr7	7689354	7689366	7689358	+	RAMPAGE_only	183	192	479	16.687853	6.475747	chr7	7689061	7689544	LTR|ERVL-MaLR|MLT1L	+	chr7	7718999	7722150	STRG.32920.10	+	7718999	7722150	0.643006
gastrocnemius_medialis_male_adult_37_years	chr16	81181319	81181331	81181330	-	High_confidence	5	5	11	0.383228	3.121928	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.909091
gastrocnemius_medialis_male_adult_37_years	chr10	30974751	30974784	30974783	-	RAMPAGE_only	6	6	10	0.348389	3.321928	chr10	30974767	30974948	SINE|MIR|MIR3	-	chr10	30844633	30984426	ZNF438|ENST00000361310.7	-	30844633,30848530,30876997,30908932,30910359,30941574,30984368	30845573,30850367,30877065,30909015,30910440,30941651,30984426	0.500000
gastrocnemius_medialis_male_adult_37_years	chr2	227534913	227534933	227534932	+	RAMPAGE_only	3	4	8	0.278712	2.807355	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.750000
gastrocnemius_medialis_male_adult_37_years	chr8	85378112	85378113	85378112	-	High_confidence	7	7	7	0.243873	2.521641	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	1.000000
gastrocnemius_medialis_male_adult_37_years	chr19	4695119	4695125	4695124	-	High_confidence	3	3	7	0.243873	2.521641	chr19	4694865	4695164	SINE|Alu|AluJo	+	chr19	4689655	4695094	DPP9|ENST00000599998.5	-	4689655,4690877,4694660	4689722,4690957,4695094	0.857143
gastrocnemius_medialis_male_adult_37_years	chr9	39810023	39810084	39810033	-	High_confidence	40	40	98	3.414216	5.736776	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803656	39810013	STRG.41479.2	-	39803656,39809485,39809730	39803859,39809615,39810013	0.836735
gastrocnemius_medialis_male_adult_37_years	chr8	11795578	11795579	11795578	+	High_confidence	199	200	236	8.221990	5.168915	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.970339
gastrocnemius_medialis_male_adult_37_years	chr3	28347653	28347654	28347653	-	High_confidence	7	7	10	0.348389	3.321928	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.900000
gastrocnemius_medialis_male_adult_37_years	chr10	14877027	14877032	14877027	+	RAMPAGE_only	7	7	17	0.592262	3.381580	chr10	14876839	14877141	LINE|L2|L2	-	chr10	14878782	14904315	SUV39H2|NR_034181.1	+	14878782,14896845,14899538,14901132,14902405	14878919,14897517,14899685,14901262,14904315	0.941176
gastrocnemius_medialis_male_adult_37_years	chr8	129752829	129752832	129752831	-	High_confidence	6	11	14	0.487745	3.180833	chr8	129752564	129757710	LINE|L1|L1MA2	+	chr8	129748195	129752886	GSDMC|ENST00000522273.5	-	129748195,129749451,129749989,129750430,129751541,129751861,129752105,129752697	129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752886	0.928571
gastrocnemius_medialis_male_adult_37_years	chr11	65431602	65431890	65431889	+	RAMPAGE_only	11	12	248	8.640057	6.520180	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
gastrocnemius_medialis_male_adult_37_years	chr10	5018014	5018017	5018014	-	RAMPAGE_only	8	9	17	0.592262	3.125000	chr10	5017765	5018153	LTR|ERVL-MaLR|MSTA	-	chr10	5010462	5015892	AKR1C2|ENST00000603073.1	-	5010462,5014902,5015836	5010653,5015234,5015892	0.823529
gastrocnemius_medialis_male_adult_37_years	chr9	128921570	128921589	128921583	+	High_confidence	3	3	18	0.627101	3.969816	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921591	128942038	PHYHD1|ENST00000353176.9	+	128921591,128921929,128922282,128927037,128933781,128934010,128936447,128937756,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128937778,128940497,128940715,128941571,128942038	0.944444
gastrocnemius_medialis_male_adult_37_years	chr17	77127872	77127877	77127872	+	High_confidence	66	67	134	4.668418	6.468340	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.634328
gastrocnemius_medialis_male_adult_37_years	chr8	27977120	27977126	27977120	-	High_confidence	10	10	23	0.801296	4.165894	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977114	STRG.37845.3	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977114	0.869565
gastrocnemius_medialis_male_adult_37_years	chr20	20089023	20089045	20089030	-	High_confidence	8	8	39	1.358719	4.628108	chr20	20088660	20089017	LINE|RTE-X|L4_B_Mam	-	chr20	20078729	20089233	STRG.72916.8	-	20078729	20089233	0.923077
gastrocnemius_medialis_male_adult_37_years	chr10	15796262	15796263	15796262	-	RAMPAGE_only	13	13	18	0.627101	3.852169	chr10	15796257	15796462	SINE|MIR|MIRb	+	chr10	15778169	15809601	STRG.44726.6	-	15778169,15782154,15786560,15789246,15796099,15809415	15779141,15782226,15786648,15789319,15796172,15809601	0.944444
gastrocnemius_medialis_male_adult_37_years	chr2	71423280	71423310	71423280	+	RAMPAGE_only	3	4	12	0.418067	3.584963	chr2	71423244	71423287	DNA|hAT-Ac|OldhAT1	+	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	1.000000
gastrocnemius_medialis_male_adult_37_years	chr8	133458932	133459050	133458951	-	RAMPAGE_only	4	4	30	1.045168	3.831402	chr8	133458873	133459194	SINE|Alu|AluJo	-	chr8	133454852	133571925	ST3GAL1|ENST00000521180.5	-	133454852,133461874,133463413,133464777,133465893,133475718,133499134,133545773,133571692	133459937,133461994,133463459,133464957,133466090,133476600,133499189,133545926,133571925	1.000000
gastrocnemius_medialis_male_adult_37_years	chr3	120719602	120719608	120719607	-	RAMPAGE_only	3	4	9	0.313550	2.750000	chr3	120719120	120721943	LINE|L1|L1PA4	+	chr3	120694152	120710546	RABL3|ENST00000468192.1	-	120694152,120698422,120705999,120709779,120710342	120694224,120698573,120706114,120709909,120710546	0.555556
gastrocnemius_medialis_male_adult_37_years	chr5	172607572	172607605	172607572	+	High_confidence	51	55	179	6.236170	6.346786	chr5	172607552	172608062	LINE|L2|L2b	-	chr5	172607584	172608822	STRG.27962.1	+	172607584	172608822	0.810056
gastrocnemius_medialis_male_adult_37_years	chr12	105353488	105353511	105353500	+	High_confidence	72	74	275	9.580709	6.274580	chr12	105353069	105353608	LTR|ERVL-MaLR|MLT1K	-	chr12	105353508	105371203	C12orf75|ENST00000548336.1	+	105353508,105365806,105366616,105367471,105370633	105353586,105365842,105366696,105367509,105371203	0.978182
gastrocnemius_medialis_male_adult_37_years	chr2	210317969	210317980	210317969	-	RAMPAGE_only	4	4	12	0.418067	3.277613	chr2	210317727	210318036	SINE|Alu|AluSc8	+	chr2	210290149	210315190	MYL1|ENST00000352451.3	-	210290149,210291031,210293722,210294244,210298419,210302487,210314910	210290467,210291074,210293800,210294418,210298563,210302515,210315190	0.916667
gastrocnemius_medialis_male_adult_37_years	chr4	158173024	158173025	158173024	-	High_confidence	41	42	52	1.811625	5.142371	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.942308
gastrocnemius_medialis_male_adult_37_years	chr20	50130098	50130118	50130098	-	RAMPAGE_only	7	7	28	0.975490	4.351823	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	1.000000
gastrocnemius_medialis_male_adult_37_years	chr20	44696111	44696112	44696111	-	High_confidence	14	14	16	0.557423	3.500000	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.937500
gastrocnemius_medialis_male_adult_37_years	chr6	56839178	56839179	56839178	-	RAMPAGE_only	24	25	35	1.219363	4.194388	chr6	56839131	56839380	LTR|ERVL-MaLR|MLT1J	+	chr6	56555607	56843146	STRG.29960.7	-	56555607,56557318,56560293,56561307,56562137,56568468,56569855,56572099,56572746,56573678,56578813,56592181,56593662,56597739,56598475,56600068,56601442,56602881,56603204,56603563,56603836,56610426,56611507,56614355,56624529,56625156,56627203,56627998,56629249,56630244,56631210,56631882,56632853,56634131,56634461,56634800,56635588,56636556,56639258,56639449,56639695,56639928,56640142,56641946,56642409,56645865,56646086,56648569,56650925,56651131,56670640,56699652,56701887,56703710,56704279,56735227,56843054	56555840,56557518,56560423,56561549,56562200,56568595,56570012,56572266,56573064,56573887,56578937,56592358,56594193,56598006,56598709,56600221,56601676,56603031,56603420,56603713,56609344,56610562,56611596,56614484,56624628,56625264,56627287,56628161,56629443,56630383,56631389,56632040,56633037,56634258,56634616,56634953,56635714,56636652,56639363,56639611,56639773,56640057,56640605,56642101,56642503,56645993,56646182,56648689,56651032,56651244,56670807,56699745,56701965,56703746,56704369,56735289,56843146	0.828571
gastrocnemius_medialis_male_adult_37_years	chr12	112506799	112506828	112506799	+	RAMPAGE_only	1	1	8	0.278712	2.807355	chr12	112506599	112506946	LTR|ERVL-MaLR|MLT1H	-	chr12	112418913	112509913	PTPN11|ENST00000351677.6	+	112418913,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486474,112488442,112489023,112502143,112504694,112505824	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504796,112509913	0.875000
gastrocnemius_medialis_male_adult_37_years	chr10	6737490	6737491	6737490	+	High_confidence	37	37	38	1.323880	4.185824	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.921053
gastrocnemius_medialis_male_adult_37_years	chr3	152396035	152396107	152396038	+	RAMPAGE_only	61	61	443	15.433651	4.767960	chr3	152395923	152396404	DNA|hAT-Charlie|MER1A	+	chr3	152300197	152459302	MBNL1|ENST00000464596.5	+	152300197,152414940,152432716,152445281,152447619,152459270	152300367,152415111,152432920,152445539,152447773,152459302	0.934537
gastrocnemius_medialis_male_adult_37_years	chr9	19126400	19126435	19126434	-	RAMPAGE_only	3	3	19	0.661940	4.058814	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19108374	19127475	STRG.41020.3	-	19108374,19116358,19118320,19119649,19120879,19123564,19126113,19126396,19127418	19109537,19116649,19118455,19119831,19121165,19123647,19126309,19126448,19127475	0.947368
gastrocnemius_medialis_male_adult_37_years	chr2	23524255	23524280	23524255	-	High_confidence	4	4	23	0.801296	4.349649	chr2	23524079	23524260	SINE|MIR|MIRc	-	chr2	23507042	23524344	AC011239.1|ENST00000430988.1	-	23507042,23523950	23507232,23524344	0.695652
gastrocnemius_medialis_male_adult_37_years	chr15	66502611	66502741	66502611	-	High_confidence	42	42	494	17.210437	6.327569	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.945344
gastrocnemius_medialis_male_adult_37_years	chr4	6849062	6849095	6849094	+	RAMPAGE_only	4	4	11	0.383228	2.921928	chr4	6848951	6849336	LINE|L2|L2	-	chr4	6859287	6884164	STRG.19924.5	+	6859287,6876659,6880786	6871682,6876757,6884164	0.818182
gastrocnemius_medialis_male_adult_37_years	chr6	149895945	149895955	149895954	-	High_confidence	3	3	10	0.348389	2.725481	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.900000
gastrocnemius_medialis_male_adult_37_years	chr16	2757800	2757806	2757801	+	High_confidence	5	6	12	0.418067	3.277613	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.916667
gastrocnemius_medialis_male_adult_37_years	chr9	33068824	33068860	33068824	-	RAMPAGE_only	2	3	12	0.418067	3.022055	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	1.000000
gastrocnemius_medialis_male_adult_37_years	chr1	155378289	155378331	155378330	-	RAMPAGE_only	2	2	8	0.278712	3.000000	chr1	155378311	155378369	LINE|CR1|L3	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.750000
gastrocnemius_medialis_male_adult_37_years	chr19	47780106	47780108	47780107	+	High_confidence	30	41	49	1.707108	4.886842	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.979592
gastrocnemius_medialis_male_adult_37_years	chr22	35611961	35611962	35611961	-	RAMPAGE_only	9	10	11	0.383228	2.845351	chr22	35611957	35612110	SINE|MIR|MIRb	-	chr22	35606763	35615713	MB|ENST00000401702.5	-	35606763,35610883,35615573	35607443,35611106,35615713	1.000000
gastrocnemius_medialis_male_adult_37_years	chr4	119217555	119217599	119217569	+	RAMPAGE_only	5	5	21	0.731618	3.820889	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212635	119294746	USP53|ENST00000274030.10	+	119212635,119214069,119217549,119235289,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119212873,119214222,119217673,119235411,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119294746	0.857143
gastrocnemius_medialis_male_adult_37_years	chr3	62150038	62150064	62150063	-	High_confidence	45	47	134	4.668418	6.442762	chr3	62149964	62150083	LINE|L2|L2a	+	chr3	62137241	62150085	STRG.15903.1	-	62137241,62149845	62138214,62150085	0.626866
gastrocnemius_medialis_male_adult_37_years	chr16	53141177	53141178	53141177	+	RAMPAGE_only	11	11	11	0.383228	3.459432	chr16	53141152	53141340	SINE|MIR|MIR	-	chr16	53130920	53327451	CHD9|ENST00000564845.5	+	53130920,53155925,53209481,53222643,53226365,53227395,53227547,53228982,53231418,53231646,53235184,53238342,53242839,53245335,53245594,53247292,53249870,53254437,53255599,53262986,53267293,53267926,53273625,53274212,53285595,53286225,53287956,53291724,53292832,53296955,53303719,53306236,53307680,53308685,53314376,53314822,53318211,53321525,53324019	53131058,53157541,53209813,53222755,53226512,53227464,53227603,53229100,53231505,53231784,53235306,53238586,53243016,53245479,53245850,53247503,53250066,53254605,53255779,53263097,53267490,53268126,53273785,53274302,53285699,53286343,53288014,53291767,53293052,53297158,53304625,53306397,53307905,53308854,53314516,53315044,53318340,53321630,53327451	0.909091
gastrocnemius_medialis_male_adult_37_years	chr2	178263370	178263407	178263370	+	RAMPAGE_only	2	3	8	0.278712	2.750000	chr2	178263196	178263485	SINE|Alu|AluSq2	+	chr2	178284926	178395785	OSBPL6|ENST00000409631.5	+	178284926,178306029,178324176,178328255,178331551,178332640,178332870,178336300,178338990,178339671,178349223,178361681,178373889,178382419,178383023,178384038,178385457,178387060,178389008,178391072,178392411,178394312,178395450	178285121,178306286,178324269,178328378,178331605,178332754,178333041,178336433,178339094,178339764,178349389,178361815,178374027,178382507,178383277,178384176,178385521,178387139,178389153,178391217,178392538,178394435,178395785	0.750000
gastrocnemius_medialis_male_adult_37_years	chr10	114861266	114861293	114861266	+	RAMPAGE_only	2	2	7	0.243873	2.807355	chr10	114861263	114861305	LINE|L1|X9_LINE	+	chr10	114843355	114864717	STRG.47518.2	+	114843355,114845366,114846012,114846558,114847089,114848646,114855196,114860748,114861230,114861434	114843937,114845481,114846367,114846728,114847233,114848737,114855340,114860889,114861334,114864717	1.000000
gastrocnemius_medialis_male_adult_37_years	chr12	21818157	21818192	21818157	-	RAMPAGE_only	2	2	10	0.348389	3.169925	chr12	21817882	21818136	LINE|L1|L1PA8A	-	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	0.800000
gastrocnemius_medialis_male_adult_37_years	chr19	3062922	3062983	3062922	-	High_confidence	80	91	289	10.068454	5.971732	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.975779
gastrocnemius_medialis_male_adult_37_years	chr10	95276777	95276800	95276782	-	RAMPAGE_only	5	5	13	0.452906	3.026987	chr10	95276590	95276825	SINE|MIR|MIR	-	chr10	95263875	95273406	PDLIM1|ENST00000493949.1	-	95263875,95268777,95271632,95273036	95264063,95268862,95271784,95273406	0.769231
gastrocnemius_medialis_male_adult_37_years	chr7	6010653	6010677	6010673	+	RAMPAGE_only	3	6	14	0.487745	3.521641	chr7	6010441	6010748	SINE|Alu|AluSz	-	chr7	6009315	6023747	AIMP2|ENST00000395236.2	+	6009315,6017813,6023302	6009498,6018045,6023747	0.785714
gastrocnemius_medialis_male_adult_37_years	chr16	4355592	4355593	4355592	-	High_confidence	373	387	387	13.482670	5.206256	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.943152
gastrocnemius_medialis_male_adult_37_years	chr7	7555293	7555323	7555304	-	High_confidence	66	67	320	11.148461	6.059335	chr7	7555240	7555694	LTR|ERVL|LTR16A	+	chr7	7552736	7555400	STRG.32873.16	-	7552736	7555400	0.578125
gastrocnemius_medialis_male_adult_37_years	chr4	184814206	184814207	184814206	-	RAMPAGE_only	12	13	13	0.452906	3.188722	chr4	184814008	184814313	SINE|Alu|AluY	+	chr4	184755594	184812259	ACSL1|NM_001286708.1	-	184755594,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621,184768315,184770398,184773080,184773662,184773842,184776483,184776883,184780331,184783926,184788616,184803319,184812159	184757265,184757706,184757920,184760500,184762523,184763255,184764925,184765986,184766756,184768450,184770476,184773154,184773714,184773875,184776662,184776983,184780433,184783991,184788731,184803546,184812259	0.615385
gastrocnemius_medialis_male_adult_37_years	chr11	123060156	123060256	123060255	-	High_confidence	25	26	344	11.984596	5.401549	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.697674
gastrocnemius_medialis_male_adult_37_years	chr1	179877329	179877361	179877329	-	High_confidence	1	1	8	0.278712	2.807355	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179843930	179877772	STRG.4944.2	-	179843930,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877772	0.625000
gastrocnemius_medialis_male_adult_37_years	chr15	90624929	90624945	90624944	+	High_confidence	5	5	9	0.313550	2.725481	chr15	90624810	90625209	DNA|hAT-Tip100|MER115	+	chr15	90624906	90629413	CRTC3|ENST00000560320.1	+	90624906,90625775,90629233	90625062,90625993,90629413	1.000000
gastrocnemius_medialis_male_adult_37_years	chr3	161073581	161073632	161073604	+	RAMPAGE_only	7	8	45	1.567752	3.973666	chr3	161073570	161073860	SINE|Alu|AluY	-	chr3	160870597	161078907	PPM1L|NR_134243.1	+	160870597,160882236,160961735,161035833,161065402,161068810	160870646,160882319,160961910,161036120,161065564,161078907	1.000000
gastrocnemius_medialis_male_adult_37_years	chr11	64226142	64226180	64226158	-	High_confidence	222	229	1070	37.277667	7.365419	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.970093
gastrocnemius_medialis_male_adult_37_years	chr14	91462180	91462210	91462209	-	High_confidence	4	4	15	0.522584	3.664498	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.866667
gastrocnemius_medialis_male_adult_37_years	chr14	102083099	102083180	102083099	-	RAMPAGE_only	4	4	39	1.358719	4.885129	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.923077
gastrocnemius_medialis_male_adult_37_years	chr1	231422714	231422749	231422748	-	RAMPAGE_only	9	12	33	1.149685	3.537688	chr1	231422714	231422871	SINE|MIR|MIRb	-	chr1	231363750	231425044	EGLN1|ENST00000366641.3	-	231363750,231367568,231370561,231373979,231420997	231366475,231367636,231370698,231374099,231425044	0.969697
gastrocnemius_medialis_male_adult_37_years	chr15	50766314	50766337	50766314	-	High_confidence	6	6	14	0.487745	3.664498	chr15	50766223	50766525	SINE|Alu|AluSc8	+	chr15	50702265	50765808	SPPL2A|ENST00000261854.9	-	50702265,50719939,50722123,50725220,50726320,50730964,50732602,50736100,50736643,50739679,50747494,50748112,50748687,50749635,50765467	50707874,50720100,50722201,50725323,50726377,50731039,50732684,50736202,50736740,50739828,50747628,50748202,50748870,50749746,50765808	0.571429
gastrocnemius_medialis_male_adult_37_years	chr7	158863388	158863402	158863401	+	RAMPAGE_only	16	30	78	2.717437	5.629249	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.858974
gastrocnemius_medialis_male_adult_37_years	chr12	7502490	7502518	7502490	-	High_confidence	2	2	10	0.348389	2.947703	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.800000
gastrocnemius_medialis_male_adult_37_years	chr17	2667132	2667196	2667195	+	High_confidence	7	7	17	0.592262	3.852169	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.941176
gastrocnemius_medialis_male_adult_37_years	chr2	219419828	219419849	219419828	+	High_confidence	7	8	14	0.487745	3.324863	chr2	219419757	219419880	LINE|L2|L2b	-	chr2	219420044	219423820	DES|ENST00000477226.5	+	219420044,219420250,219420494,219420827,219421339,219423776	219420155,219420346,219420656,219420953,219421560,219423820	1.000000
gastrocnemius_medialis_male_adult_37_years	chr17	64172164	64172165	64172164	-	RAMPAGE_only	7	7	7	0.243873	2.521641	chr17	64172072	64172372	SINE|Alu|AluSc8	+	chr17	64147440	64156234	TEX2|ENST00000584498.5	-	64147440,64152944,64154841	64150961,64153154,64156234	1.000000
gastrocnemius_medialis_male_adult_37_years	chr7	121060851	121060887	121060871	+	High_confidence	2	2	9	0.313550	2.750000	chr7	121059787	121061189	LTR|ERV1|LTR12C	+	chr7	121060768	121100330	STRG.36352.8	+	121060768,121064237,121097698,121099925	121061204,121064313,121097831,121100330	0.777778
gastrocnemius_medialis_male_adult_37_years	chr2	27978172	27978208	27978172	+	RAMPAGE_only	2	2	10	0.348389	3.121928	chr2	27978041	27978454	LTR|ERVL-MaLR|MSTB	+	chr2	27894619	28025488	BABAM2|ENST00000604932.1	+	27894619,27929831,27987992,28025225	27894684,27929908,27988087,28025488	0.800000
gastrocnemius_medialis_male_adult_37_years	chr21	46358322	46358347	46358346	+	RAMPAGE_only	22	22	34	1.184524	4.392583	chr21	46358285	46358486	LINE|CR1|L3	-	chr21	46348238	46443172	STRG.75173.3	+	46348238,46349011,46349683,46351428,46353103,46353986,46355451,46356973,46363479,46366583,46381693,46385831,46388741,46389198,46390669,46391163,46394503,46397264,46398013,46398234,46399589,46401550,46402330,46411188,46412836,46416068,46418203,46421969,46425830,46427621,46428394,46430009,46430506,46431528,46435903,46436978,46438163,46440082,46440854,46442496	46348325,46349186,46349820,46351540,46353326,46354068,46355626,46357191,46363934,46367139,46381840,46385983,46388884,46389431,46390832,46391376,46394536,46397494,46398130,46398255,46399796,46401721,46402483,46412067,46412992,46416839,46418306,46422124,46425971,46427795,46428590,46430232,46430657,46431978,46436148,46437081,46438337,46440202,46441084,46443172	0.941176
gastrocnemius_medialis_male_adult_37_years	chr9	123179187	123179211	123179199	-	RAMPAGE_only	2	2	9	0.313550	2.750000	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.888889
gastrocnemius_medialis_male_adult_37_years	chrX	20204065	20204080	20204079	-	RAMPAGE_only	3	4	9	0.313550	2.500000	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.888889
gastrocnemius_medialis_male_adult_37_years	chr12	91179462	91179549	91179462	-	High_confidence	1665	1832	6525	227.324091	7.609971	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.903602
gastrocnemius_medialis_male_adult_37_years	chr2	178679617	178679681	178679658	-	RAMPAGE_only	95	103	811	28.254381	6.947352	chr2	178679617	178679655	LINE|CR1|L3	-	chr2	178636751	178702520	TTN|ENST00000414766.5	-	178636751,178639698,178640047,178640540,178641240,178642236,178673632,178674313,178678124,178678413,178678746,178681660,178682696,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453	178636799,178639788,178640110,178640630,178641315,178642317,178673710,178674409,178678208,178678497,178678830,178681738,178682903,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702520	0.710234
gastrocnemius_medialis_male_adult_37_years	chr20	44532569	44532570	44532569	+	High_confidence	5	5	7	0.243873	2.584963	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.857143
gastrocnemius_medialis_male_adult_37_years	chr1	20639914	20639976	20639975	+	RAMPAGE_only	4	5	31	1.080007	3.695501	chr1	20640002	20640112	LINE|L2|L2b	+	chr1	20638128	20651316	PINK1|ENST00000492302.1	+	20638128,20644489,20645559,20648504,20650433	20639992,20644672,20645723,20649231,20651316	1.000000
gastrocnemius_medialis_male_adult_37_years	chr3	141429538	141429539	141429538	+	RAMPAGE_only	11	12	14	0.487745	3.546594	chr3	141429492	141430039	LINE|L2|L2a	-	chr3	141426126	141443020	ZBTB38|ENST00000510726.1	+	141426126,141427633,141442388	141426165,141427821,141443020	0.500000
gastrocnemius_medialis_male_adult_37_years	chr3	139344537	139344548	139344547	+	High_confidence	7	7	20	0.696779	3.932138	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.800000
gastrocnemius_medialis_male_adult_37_years	chr10	113662680	113662704	113662680	-	RAMPAGE_only	38	40	131	4.563901	5.330512	chr10	113662586	113662659	LINE|L1|L1MA4A	-	chr10	113588715	113664046	NRAP|ENST00000369360.7	-	113588715,113589665,113590577,113592193,113595622,113597085,113597968,113604608,113605761,113606177,113608413,113610458,113612233,113614182,113614838,113615711,113617454,113620603,113621868,113623528,113624825,113626046,113628916,113629587,113631508,113631852,113633083,113634111,113640226,113641364,113645824,113646922,113650036,113650437,113651802,113652934,113654020,113657469,113662678,113663351,113663810	113589079,113589797,113590889,113592301,113595727,113597184,113598073,113604920,113605869,113606282,113608512,113610563,113612431,113614296,113614946,113615816,113617553,113620708,113622180,113623636,113624930,113626145,113629021,113629785,113631630,113631964,113633188,113634210,113640331,113641472,113645941,113647027,113650141,113650545,113651907,113653039,113654125,113657574,113662766,113663446,113664046	0.961832
gastrocnemius_medialis_male_adult_37_years	chr2	215855554	215855555	215855554	+	RAMPAGE_only	50	50	55	1.916142	4.366018	chr2	215855436	215855812	LTR|ERVL-MaLR|THE1C	+	chr2	215869922	215870518	AC122136.1|ENST00000443971.1	+	215869922,215870263	215870145,215870518	0.854545
gastrocnemius_medialis_male_adult_37_years	chr2	38083053	38083084	38083053	+	High_confidence	4	4	10	0.348389	2.947703	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.600000
gastrocnemius_medialis_male_adult_37_years	chr9	105458185	105458216	105458215	+	RAMPAGE_only	5	5	20	0.696779	4.247928	chr9	105457577	105458817	LTR|ERV1|LTR2752	-	chr9	105448135	105506475	FSD1L|ENST00000480279.1	+	105448135,105464239,105468192,105471903,105484380,105506398	105448176,105464331,105468324,105472005,105484502,105506475	0.600000
gastrocnemius_medialis_male_adult_37_years	chr9	33815100	33815101	33815100	+	RAMPAGE_only	4	4	7	0.243873	2.807355	chr9	33814859	33815461	LINE|L1|L1MC3	+	chr9	33817183	33920403	UBE2R2|NM_017811.3	+	33817183,33886880,33900173,33911963,33917017	33817934,33886967,33900271,33912098,33920403	0.714286
gastrocnemius_medialis_male_adult_37_years	chr3	195906039	195906075	195906074	-	RAMPAGE_only	2	2	6	0.209034	2.584963	chr3	195905498	195906779	LINE|L1|L1ME1	+	chr3	195863364	195909009	TNK2|NM_005781.4	-	195863364,195866888,195867168,195867360,195870113,195872275,195878252,195878445,195879048,195882050,195883156,195884811,195886976,195888425,195908484	195864187,195867016,195867258,195868709,195870205,195872470,195878347,195878592,195879175,195882328,195883309,195885033,195887047,195888606,195909009	0.833333
gastrocnemius_medialis_male_adult_37_years	chr4	79492591	79492616	79492591	+	High_confidence	3	4	17	0.592262	3.327820	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.764706
gastrocnemius_medialis_male_adult_37_years	chr2	29175512	29175534	29175533	+	RAMPAGE_only	3	3	8	0.278712	2.807355	chr2	29175307	29175605	LINE|CR1|L3	+	chr2	29115425	29183813	CLIP4|NM_024692.5	+	29115425,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29115665,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29183813	0.750000
gastrocnemius_medialis_male_adult_37_years	chr10	30974835	30974879	30974858	-	RAMPAGE_only	24	32	151	5.260680	6.491425	chr10	30974767	30974948	SINE|MIR|MIR3	-	chr10	30839932	30984426	STRG.45007.5	-	30839932,30848530,30857679,30875330,30876997,30908932,30941574,30974593,30984368	30845573,30850367,30858186,30875509,30877065,30909015,30941651,30974652,30984426	0.536424
gastrocnemius_medialis_male_adult_37_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	8	8	8	0.278712	2.750000	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
gastrocnemius_medialis_male_adult_37_years	chr1	182390165	182390187	182390165	-	High_confidence	2	2	8	0.278712	2.521641	chr1	182389985	182390241	SINE|Alu|AluSx	+	chr1	182382893	182390304	GLUL|ENST00000491322.1	-	182382893,182388571	182387292,182390304	0.875000
gastrocnemius_medialis_male_adult_37_years	chr2	151688623	151688661	151688623	-	RAMPAGE_only	5	6	29	1.010329	4.176753	chr2	151688574	151688838	DNA|TcMar-Tigger|MER44D	-	chr2	151485759	151733156	NEB|ENST00000603639.5	-	151485759,151489970,151490371,151491682,151492097,151492386,151493352,151493774,151494160,151496275,151496940,151497625,151498259,151499297,151501390,151502792,151503348,151505477,151506165,151506908,151508004,151512732,151513579,151514317,151514817,151516458,151518317,151518964,151519657,151524310,151524514,151525162,151525957,151526157,151526917,151527480,151529209,151530993,151531791,151533441,151535690,151537131,151537871,151538139,151540343,151540696,151541446,151545887,151546344,151547428,151547633,151548307,151549635,151551737,151552671,151553397,151553827,151554930,151560591,151561003,151561207,151562109,151562610,151563605,151563822,151565043,151565500,151565715,151567167,151568070,151568315,151568617,151569267,151570080,151570496,151575694,151576150,151579337,151580796,151581482,151582463,151583454,151585506,151586404,151587373,151589888,151591347,151592033,151593015,151594006,151596059,151596957,151597926,151600441,151601900,151602586,151603568,151604559,151606605,151607503,151608472,151609808,151610515,151610761,151612185,151614275,151616001,151617363,151618274,151619450,151620918,151625533,151627001,151627522,151629538,151630714,151631142,151633653,151636226,151639279,151639856,151640354,151642573,151642764,151643149,151643817,151644467,151646129,151650175,151650573,151653991,151655269,151655816,151656152,151657982,151659064,151662134,151663547,151664500,151664758,151665332,151666089,151667803,151669026,151671022,151672368,151674476,151675286,151677564,151677875,151679720,151679917,151680729,151682661,151684777,151687418,151687625,151688291,151690726,151691863,151692058,151692260,151694322,151694521,151695577,151696636,151697147,151697349,151697543,151706880,151709655,151710433,151717415,151723381,151724259,151724856,151725452,151727690,151729614,151733120	151485933,151490077,151490518,151491775,151492281,151492494,151493445,151493867,151494253,151496368,151497033,151497718,151498352,151499390,151501483,151502885,151503441,151505570,151506258,151507013,151508109,151512837,151513693,151514428,151514928,151516563,151518422,151519069,151519768,151524415,151524616,151525273,151526068,151526262,151527022,151527585,151529314,151531101,151531896,151533546,151535795,151537236,151537976,151538244,151540448,151540801,151541551,151545998,151546443,151547533,151547738,151548415,151549740,151551845,151552776,151553502,151554025,151555044,151560699,151561108,151561312,151562214,151562808,151563719,151563930,151565148,151565605,151565820,151567479,151568178,151568417,151568716,151569372,151570392,151570601,151575799,151576354,151579649,151580904,151581587,151582667,151583766,151585614,151586509,151587577,151590200,151591455,151592138,151593219,151594318,151596167,151597062,151598130,151600753,151602008,151602691,151603772,151604871,151606713,151607608,151608676,151610120,151610623,151610866,151612389,151614587,151616109,151617468,151618478,151619762,151621026,151625638,151627205,151627834,151629646,151630819,151631346,151633965,151636334,151639384,151640060,151640666,151642681,151642869,151643353,151644129,151644575,151646234,151650379,151650885,151654099,151655374,151656023,151656464,151658090,151659169,151662341,151663859,151664608,151664863,151665539,151666401,151667911,151669131,151671229,151672680,151674584,151675391,151677771,151678187,151679828,151680022,151680828,151682769,151684975,151687532,151687733,151688396,151690825,151691968,151692166,151692362,151694436,151694629,151695682,151696735,151697252,151697457,151697648,151706997,151709763,151710538,151717520,151723486,151724364,151724961,151725560,151727906,151729656,151733156	0.758621
gastrocnemius_medialis_male_adult_37_years	chr2	151532137	151532228	151532137	-	High_confidence	3	6	32	1.114846	4.168244	chr2	151532092	151532225	SINE|Alu|AluSx4	-	chr2	151530640	151532163	NEB|ENST00000480784.1	-	151530640,151531791	151531101,151532163	0.937500
gastrocnemius_medialis_male_adult_37_years	chr6	35584803	35584834	35584813	-	RAMPAGE_only	2	2	9	0.313550	2.500000	chr6	35584733	35584814	DNA|hAT-Charlie|Charlie19a	-	chr6	35580556	35688942	FKBP5|ENST00000542713.1	-	35580556,35597247,35619095,35620131,35637013,35642719,35688803	35587117,35597404,35619210,35620274,35637158,35642843,35688942	0.888889
gastrocnemius_medialis_male_adult_37_years	chrX	2388908	2388921	2388920	+	High_confidence	3	3	16	0.557423	3.906891	chrX	2388889	2389102	LTR|ERVL-MaLR|MLT1B	+	chrX	2388914	2389286	STRG.76421.1	+	2388914	2389286	0.750000
gastrocnemius_medialis_male_adult_37_years	chr11	65432847	65432901	65432869	+	RAMPAGE_only	3	3	19	0.661940	3.947703	chr11	65432693	65433229	LINE|L1|L1PB3	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.947368
gastrocnemius_medialis_male_adult_37_years	chr6	16277892	16277951	16277904	+	RAMPAGE_only	16	32	154	5.365197	6.472987	chr6	16277565	16277912	LINE|L2|L2b	-	chr6	16289517	16295544	GMPR|ENST00000544145.1	+	16289517,16290461,16295005	16289568,16290621,16295544	0.870130
gastrocnemius_medialis_male_adult_37_years	chr16	20736862	20736876	20736875	-	RAMPAGE_only	2	2	7	0.243873	2.584963	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	0.857143
gastrocnemius_medialis_male_adult_37_years	chr3	155282881	155282882	155282881	-	High_confidence	58	58	60	2.090336	4.728947	chr3	155282776	155283245	LTR|ERV1|LTR7C	-	chr3	155281147	155282908	STRG.18091.1	-	155281147	155282908	0.866667
gastrocnemius_medialis_male_adult_37_years	chr7	103353930	103353957	103353930	+	High_confidence	6	7	17	0.592262	3.404543	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.823529
gastrocnemius_medialis_male_adult_37_years	chr3	29924753	29924774	29924766	+	High_confidence	3	3	12	0.418067	2.855389	chr3	29924556	29924859	SINE|Alu|AluSp	+	chr3	29924750	29991197	RBMS3|ENST00000473799.1	+	29924750,29936085,29944206,29988142,29991081	29925243,29936196,29944254,29988223,29991197	0.833333
gastrocnemius_medialis_male_adult_37_years	chr11	43881075	43881102	43881087	+	High_confidence	24	28	118	4.110995	5.322458	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.830508
gastrocnemius_medialis_male_adult_37_years	chr7	25839075	25839076	25839075	+	High_confidence	206	207	209	7.281339	5.941520	chr7	25838942	25839178	LTR|ERVL-MaLR|MLT1I	+	chr7	25839087	25849140	STRG.33529.1	+	25839087,25846088,25846727	25839353,25846222,25849140	0.966507
gastrocnemius_medialis_male_adult_37_years	chr4	119145824	119145830	119145829	+	RAMPAGE_only	11	14	35	1.219363	4.514718	chr4	119145674	119147458	LINE|L1|L1MD1	-	chr4	119135825	119187787	STRG.22321.1	+	119135825,119136511,119139524,119150871,119158021,119164210,119185965	119135982,119136601,119139564,119151041,119158151,119164394,119187787	1.000000
gastrocnemius_medialis_male_adult_37_years	chr11	65429098	65429549	65429201	+	RAMPAGE_only	16	19	255	8.883930	4.916545	chr11	65428987	65429477	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.992157
gastrocnemius_medialis_male_adult_37_years	chr17	59619894	59619923	59619894	+	High_confidence	693	742	1344	46.823537	5.210577	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.961310
gastrocnemius_medialis_male_adult_37_years	chr1	54200582	54200588	54200582	+	High_confidence	2	2	7	0.243873	2.807355	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200195	54225464	MRPL37|ENST00000605337.5	+	54200195,54205017,54205294,54209945,54212500,54216140,54225124	54200589,54205201,54205410,54210131,54212658,54216344,54225464	1.000000
gastrocnemius_medialis_male_adult_37_years	chr10	73408286	73408287	73408286	-	High_confidence	6	6	7	0.243873	2.584963	chr10	73408036	73408345	SINE|Alu|AluJb	+	chr10	73396519	73408407	ANXA7|ENST00000394847.3	-	73396519,73397163,73398180,73400802,73408194	73396583,73397274,73398385,73400857,73408407	0.857143
gastrocnemius_medialis_male_adult_37_years	chr8	123507115	123507116	123507115	-	High_confidence	5	5	8	0.278712	3.000000	chr8	123507024	123507131	LINE|L2|L2a	+	chr8	123503105	123506625	FBXO32|ENST00000524000.5	-	123503105,123504603,123506391	123503462,123504747,123506625	0.500000
gastrocnemius_medialis_male_adult_37_years	chr16	28538612	28538646	28538645	-	High_confidence	2	2	10	0.348389	3.169925	chr16	28538407	28538698	SINE|Alu|AluJo	+	chr16	28537506	28538951	NUPR1|ENST00000567646.1	-	28537506,28538005,28538525,28538795	28537669,28538155,28538654,28538951	0.500000
gastrocnemius_medialis_male_adult_37_years	chr9	5608991	5609054	5609053	-	RAMPAGE_only	7	8	36	1.254202	4.514718	chr9	5609015	5609089	SINE|MIR|MIR3	-	chr9	5576210	5622490	STRG.40744.2	-	5576210,5604891,5621370	5577511,5604935,5622490	0.777778
gastrocnemius_medialis_male_adult_37_years	chr22	46171407	46171411	46171407	+	RAMPAGE_only	2	3	6	0.209034	2.584963	chr22	46171297	46171902	LINE|L2|L2a	-	chr22	46176747	46235403	PPARA|ENST00000402126.1	+	46176747,46198344,46215172,46218262,46219811,46231791,46235132	46176836,46198591,46215333,46218401,46220014,46232239,46235403	1.000000
gastrocnemius_medialis_male_adult_37_years	chr4	119145710	119145722	119145721	+	RAMPAGE_only	3	3	6	0.209034	2.584963	chr4	119145674	119147458	LINE|L1|L1MD1	-	chr4	119135825	119187787	STRG.22321.1	+	119135825,119136511,119139524,119150871,119158021,119164210,119185965	119135982,119136601,119139564,119151041,119158151,119164394,119187787	1.000000
gastrocnemius_medialis_male_adult_37_years	chr1	59203095	59203096	59203095	-	High_confidence	9	11	11	0.383228	3.095795	chr1	59202991	59203108	SINE|MIR|MIR	+	chr1	59132375	59203468	HSD52|ENST00000624582.3	-	59132375,59133230,59203094	59132746,59133330,59203468	1.000000
gastrocnemius_medialis_male_adult_37_years	chr2	28165290	28165304	28165292	+	RAMPAGE_only	13	22	55	1.916142	4.581829	chr2	28165020	28165437	LINE|L2|L2b	-	chr2	27890792	28338901	BABAM2|ENST00000361704.6	+	27890792,27894532,27929831,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28310081,28338449	27890842,27894684,27929908,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28310153,28338901	0.890909
gastrocnemius_medialis_male_adult_37_years	chr19	45424459	45424483	45424482	-	High_confidence	8	8	19	0.661940	3.892407	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	1.000000
gastrocnemius_medialis_male_adult_37_years	chr4	119145751	119145763	119145762	+	RAMPAGE_only	6	11	17	0.592262	3.750000	chr4	119145674	119147458	LINE|L1|L1MD1	-	chr4	119135825	119187787	STRG.22321.1	+	119135825,119136511,119139524,119150871,119158021,119164210,119185965	119135982,119136601,119139564,119151041,119158151,119164394,119187787	0.941176
gastrocnemius_medialis_male_adult_37_years	chr6	2963813	2963853	2963852	-	High_confidence	12	17	31	1.080007	3.848885	chr6	2963724	2964138	LTR|ERV1|LTR35B	+	chr6	2948965	2964005	SERPINB6|ENST00000644828.1	-	2948965,2953043,2954591,2955523,2963394	2949069,2953186,2954709,2955670,2964005	0.806452
gastrocnemius_medialis_male_adult_37_years	chr2	27967351	27967352	27967351	+	RAMPAGE_only	5	7	8	0.278712	2.807355	chr2	27967169	27967529	LTR|ERVL-MaLR|THE1B	+	chr2	27894544	28233315	BABAM2|ENST00000379629.7	+	27894544,27929831,27987992,28025225,28045724,28129270,28233142	27894684,27929908,27988087,28025420,28045799,28129380,28233315	0.625000
gastrocnemius_medialis_male_adult_37_years	chr12	28825945	28825946	28825945	-	High_confidence	6	6	6	0.209034	2.584963	chr12	28825676	28826170	LTR|ERVL|MLT2B3	-	chr12	28821974	28825831	AC022081.1|ENST00000537327.1	-	28821974,28825697	28822273,28825831	1.000000
gastrocnemius_medialis_male_adult_37_years	chr3	180870518	180870521	180870518	-	High_confidence	22	26	34	1.184524	4.601410	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180764949	180870548	STRG.19016.6	-	180764949,180847506,180870046	180782124,180847624,180870548	0.911765
gastrocnemius_medialis_male_adult_37_years	chr19	55280218	55280241	55280218	-	High_confidence	3	3	9	0.313550	2.500000	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.888889
gastrocnemius_medialis_male_adult_37_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	26	26	26	0.905812	4.392747	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888512	77933384	NEXN|ENST00000401035.7	+	77888512,77916054,77917959,77918124,77925187,77926413,77926715,77929315,77933281	77888759,77916133,77918038,77918273,77925229,77926611,77926892,77929504,77933384	0.730769
gastrocnemius_medialis_male_adult_37_years	chr17	4952643	4952650	4952643	+	High_confidence	6	6	17	0.592262	3.875000	chr17	4952622	4952761	SINE|Alu|AluSz	-	chr17	4951757	4957118	ENO3|ENST00000518175.1	+	4951757,4952794,4953050,4953271,4953711,4955074,4955406,4955941,4956572,4956830,4956977	4951914,4952890,4953109,4953341,4953845,4955297,4955604,4956143,4956681,4956889,4957118	0.941176
gastrocnemius_medialis_male_adult_37_years	chr17	4610469	4610495	4610489	+	High_confidence	5	5	24	0.836135	4.023137	chr17	4610403	4610704	SINE|Alu|AluJb	+	chr17	4610448	4617650	LINC01996|ENST00000573270.1	+	4610448,4616762	4610833,4617650	0.958333
gastrocnemius_medialis_male_adult_37_years	chr11	107719678	107719701	107719695	-	High_confidence	395	424	700	24.387259	5.086900	chr11	107719646	107719884	LTR|Gypsy?|LTR88c	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.987143
gastrocnemius_medialis_male_adult_37_years	chr10	45000487	45000523	45000522	+	High_confidence	5	5	14	0.487745	3.664498	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
gastrocnemius_medialis_male_adult_37_years	chr8	86417214	86417236	86417235	+	High_confidence	34	34	78	2.717437	5.620365	chr8	86417268	86417372	DNA|hAT-Charlie|MER58D	+	chr8	86417222	86431665	WWP1|ENST00000521079.1	+	86417222,86425222,86427642,86430696,86431405,86431614	86417279,86425318,86427817,86430751,86431490,86431665	0.551282
gastrocnemius_medialis_male_adult_37_years	chr1	238486008	238486036	238486008	-	High_confidence	2	2	11	0.383228	3.121928	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480383	238486017	LINC01139|NR_015407.1	-	238480383,238485784	238481681,238486017	0.818182
gastrocnemius_medialis_male_adult_37_years	chr6	79631294	79631329	79631302	+	High_confidence	26	26	88	3.065827	5.102378	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.988636
gastrocnemius_medialis_male_adult_37_years	chr11	45734516	45734532	45734528	+	RAMPAGE_only	3	3	9	0.313550	3.000000	chr11	45734448	45734827	LTR|ERVL-MaLR|MLT1G3	+	chr11	45723308	45744250	AC044839.1|ENST00000529769.1	+	45723308,45734540,45739409,45744028	45723572,45734799,45739542,45744250	0.888889
gastrocnemius_medialis_male_adult_37_years	chr12	6493747	6493748	6493747	-	High_confidence	14	14	20	0.696779	4.142664	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6492151	6493718	MRPL51|ENST00000543959.5	-	6492151,6492861,6493673	6492467,6492972,6493718	0.950000
gastrocnemius_medialis_male_adult_37_years	chr3	135965673	135965749	135965748	+	High_confidence	56	57	415	14.458161	6.230354	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965743	136145384	STRG.17599.1	+	135965743,136001058,136023026,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136023201,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136145384	0.983133
gastrocnemius_medialis_male_adult_37_years	chr5	42175225	42175251	42175225	-	High_confidence	2	2	10	0.348389	2.947703	chr5	42175074	42175255	LTR|ERVL-MaLR|MSTC	-	chr5	42155832	42175345	LOC101926960|NR_104635.1	-	42155832,42159336,42168462,42175152	42157411,42159446,42168587,42175345	0.700000
gastrocnemius_medialis_male_adult_37_years	chr2	151532318	151532338	151532318	-	High_confidence	2	2	8	0.278712	3.000000	chr2	151532253	151532337	SINE|MIR|MIRc	-	chr2	151530640	151532163	NEB|ENST00000480784.1	-	151530640,151531791	151531101,151532163	1.000000
gastrocnemius_medialis_male_adult_37_years	chr6	73169470	73169488	73169487	+	RAMPAGE_only	6	6	12	0.418067	3.459432	chr6	73169288	73169503	SINE|tRNA-RTE|MamSINE1	+	chr6	72622171	73195454	KCNQ5|ENST00000629977.2	+	72622171,73003907,73041935,73077321,73077761,73105256,73111307,73120482,73133420,73169745,73190572,73192564,73194451	72622587,73003998,73042062,73077497,73077887,73105367,73111403,73120577,73133641,73169854,73190704,73192691,73195454	0.833333
gastrocnemius_medialis_male_adult_37_years	chr8	99893444	99893445	99893444	-	High_confidence	7	8	8	0.278712	2.807355	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.875000
gastrocnemius_medialis_male_adult_37_years	chr14	81192631	81192670	81192654	-	RAMPAGE_only	3	3	10	0.348389	3.169925	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.900000
gastrocnemius_medialis_male_adult_37_years	chr12	46266488	46266516	46266488	-	High_confidence	162	169	288	10.033615	6.399388	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.885417
gastrocnemius_medialis_male_adult_37_years	chr7	113910066	113910067	113910066	-	RAMPAGE_only	6	6	9	0.313550	2.725481	chr7	113909901	113910254	LTR|ERVL-MaLR|THE1B	-	chr7	113879770	113918996	PPP1R3A|ENST00000284602.1	-	113879770,113882038,113882261,113918214,113918818	113880125,113882163,113882320,113918297,113918996	0.666667
gastrocnemius_medialis_male_adult_37_years	chr16	67006162	67006206	67006162	+	High_confidence	2	2	10	0.348389	2.725481	chr16	67006126	67006302	SINE|MIR|MIRb	-	chr16	67006522	67009418	CES4A|ENST00000544478.1	+	67006522,67008973	67006817,67009418	0.500000
gastrocnemius_medialis_male_adult_37_years	chr3	52827413	52827414	52827413	-	High_confidence	4	6	7	0.243873	2.584963	chr3	52827329	52827472	SINE|MIR|MIRb	-	chr3	52813285	52826917	ITIH4|ENST00000441637.2	-	52813285,52813974,52814208,52816883,52818256,52818461,52819392,52820290,52820630,52820990,52823555,52823822,52824189,52824396,52824841,52825885,52826540,52826790	52813490,52814071,52814363,52817058,52818283,52818536,52819518,52820317,52820785,52821130,52823741,52824004,52824315,52824565,52824958,52825978,52826651,52826917	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr6	35680381	35680422	35680381	-	RAMPAGE_only	4	4	18	0.832745	3.499228	chr6	35680148	35680449	SINE|Alu|AluJr	+	chr6	35573589	35688915	STRG.47610.1	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35643276,35646162,35646729,35672591,35678957,35684376,35688093	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35642843,35643348,35646366,35646850,35672759,35680422,35684485,35688915	0.944444
gastroesophageal_sphincter_female_adult_51_years	chr1	46927827	46927828	46927827	+	High_confidence	13	13	13	0.601427	3.238901	chr1	46927824	46928254	LTR|ERVL-MaLR|MSTA1	+	chr1	46927117	46928627	STRG.2237.1	+	46927117	46928627	0.923077
gastroesophageal_sphincter_female_adult_51_years	chr8	53524061	53524086	53524085	-	High_confidence	12	13	32	1.480436	4.161406	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.937500
gastroesophageal_sphincter_female_adult_51_years	chr19	47780066	47780108	47780107	+	High_confidence	9	13	28	1.295381	4.521641	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.964286
gastroesophageal_sphincter_female_adult_51_years	chr8	143039266	143039267	143039266	+	High_confidence	4	4	6	0.277582	2.584963	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr21	29077464	29077517	29077486	+	High_confidence	9	9	38	1.758017	4.237179	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.710526
gastroesophageal_sphincter_female_adult_51_years	chr17	8310249	8310257	8310249	+	High_confidence	2	2	7	0.323845	2.521641	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr6	113873346	113873388	113873346	-	High_confidence	5	5	20	0.925272	3.326360	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.950000
gastroesophageal_sphincter_female_adult_51_years	chr16	86490762	86490783	86490782	-	RAMPAGE_only	4	4	11	0.508900	2.921928	chr16	86490702	86490896	LINE|L1|L1MC5a	-	chr16	86490267	86508877	FENDRR|ENST00000593604.1	-	86490267,86508654	86491004,86508877	0.727273
gastroesophageal_sphincter_female_adult_51_years	chr20	37297387	37297401	37297387	+	High_confidence	11	11	26	1.202854	4.469670	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.961538
gastroesophageal_sphincter_female_adult_51_years	chr3	114759276	114759301	114759276	-	High_confidence	9	10	18	0.832745	3.734522	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr11	123060137	123060257	123060256	-	High_confidence	56	83	780	36.085622	5.703881	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.596154
gastroesophageal_sphincter_female_adult_51_years	chr2	164352228	164352239	164352232	-	High_confidence	7	7	23	1.064063	4.001823	chr2	164352042	164352431	LTR|ERVL-MaLR|MLT1C	-	chr2	163749572	164352223	AC016766.1|ENST00000429636.1	-	163749572,163869148,163950180,164250719,164352119	163749907,163869252,163950259,164250811,164352223	0.521739
gastroesophageal_sphincter_female_adult_51_years	chr7	150323720	150323751	150323720	-	High_confidence	3	3	8	0.370109	2.500000	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr6	112165375	112165411	112165399	-	High_confidence	4	4	15	0.693954	3.521641	chr6	112165361	112165475	SINE|MIR|MIRb	+	chr6	112142143	112165164	LAMA4|ENST00000523765.1	-	112142143,112144793,112148156,112150435,112154850,112155564,112158731,112165159	112142292,112144933,112148336,112150627,112154947,112155706,112158880,112165164	0.533333
gastroesophageal_sphincter_female_adult_51_years	chr6	29497463	29497475	29497474	+	High_confidence	7	8	13	0.601427	3.584963	chr6	29497305	29497670	LTR|ERVL-MaLR|THE1D	+	chr6	29497508	29510556	AL662860.1|ENST00000436804.1	+	29497508,29505320,29507168,29510267	29497539,29505377,29507668,29510556	0.846154
gastroesophageal_sphincter_female_adult_51_years	chr7	11194703	11194710	11194708	+	RAMPAGE_only	15	18	29	1.341645	4.208966	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.655172
gastroesophageal_sphincter_female_adult_51_years	chr17	49646263	49646318	49646317	-	High_confidence	9	10	49	2.266917	5.303509	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49619233	49646622	STRG.106943.13	-	49619233,49621945,49622732,49646115	49619385,49622067,49622876,49646622	0.551020
gastroesophageal_sphincter_female_adult_51_years	chr6	159681872	159682074	159681872	-	RAMPAGE_only	42	42	216	9.992942	5.926779	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr11	123061178	123061323	123061322	-	High_confidence	51	78	381	17.626439	5.809665	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.968504
gastroesophageal_sphincter_female_adult_51_years	chr3	33130017	33130063	33130062	+	RAMPAGE_only	8	8	26	1.202854	3.863465	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	0.961538
gastroesophageal_sphincter_female_adult_51_years	chr2	217937254	217937255	217937254	-	High_confidence	13	13	14	0.647691	3.392747	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.714286
gastroesophageal_sphincter_female_adult_51_years	chr17	4143196	4143215	4143199	+	High_confidence	82	84	219	10.131732	5.645822	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.954338
gastroesophageal_sphincter_female_adult_51_years	chr8	18063191	18063216	18063191	-	High_confidence	2	2	9	0.416373	3.000000	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.888889
gastroesophageal_sphincter_female_adult_51_years	chr6	35672718	35672758	35672718	-	RAMPAGE_only	8	8	20	0.925272	3.536887	chr6	35672643	35672949	SINE|Alu|AluY	+	chr6	35573589	35688915	STRG.47610.1	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35643276,35646162,35646729,35672591,35678957,35684376,35688093	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35642843,35643348,35646366,35646850,35672759,35680422,35684485,35688915	0.700000
gastroesophageal_sphincter_female_adult_51_years	chr1	176162919	176162964	176162936	-	RAMPAGE_only	4	6	26	1.202854	4.168296	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.576923
gastroesophageal_sphincter_female_adult_51_years	chr2	179043807	179043808	179043807	-	RAMPAGE_only	15	15	18	0.832745	4.169925	chr2	179042647	179044414	LINE|L1|L1PA10	+	chr2	178855400	179050018	STRG.18368.1	-	178855400,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900,178886751,178888526,178905328,178918712,178944534,178961229,178975056,178978483,179047283,179049839	178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178885092,178886871,178888668,178905501,178918907,178944651,178961483,178975165,178978675,179047406,179050018	0.722222
gastroesophageal_sphincter_female_adult_51_years	chr3	188485721	188485722	188485721	+	RAMPAGE_only	9	9	13	0.601427	3.546594	chr3	188485515	188485814	SINE|Alu|AluYa5	+	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.923077
gastroesophageal_sphincter_female_adult_51_years	chr5	96979680	96979763	96979762	+	RAMPAGE_only	11	14	46	2.128126	4.466406	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	0.891304
gastroesophageal_sphincter_female_adult_51_years	chr10	63610307	63610323	63610322	+	RAMPAGE_only	5	6	10	0.462636	3.121928	chr10	63610367	63610583	LINE|L1|L1PA8	+	chr10	63521362	63625123	REEP3|ENST00000373758.4	+	63521362,63566337,63594777,63598023,63599169,63610186,63619654,63620812	63521577,63566410,63594854,63598144,63599283,63610334,63619800,63625123	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr12	9965312	9965321	9965320	+	RAMPAGE_only	25	28	43	1.989336	5.036616	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.581395
gastroesophageal_sphincter_female_adult_51_years	chr9	111284806	111284842	111284841	-	High_confidence	6	7	14	0.647691	3.026987	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.928571
gastroesophageal_sphincter_female_adult_51_years	chr16	87860670	87860718	87860670	-	RAMPAGE_only	3	3	19	0.879009	3.503258	chr16	87860400	87860678	LTR|ERV1|MER4B	+	chr16	87830022	87863639	SLC7A5|ENST00000565644.5	-	87830022,87834413,87836497,87837844,87838713,87839701,87840428,87841049,87851723,87863589	87833025,87834591,87836647,87837941,87838817,87839825,87840473,87841155,87851849,87863639	0.684211
gastroesophageal_sphincter_female_adult_51_years	chr11	123071386	123071604	123071386	-	RAMPAGE_only	64	73	629	29.099816	5.281895	chr11	123071151	123071444	SINE|Alu|AluSx	+	chr11	123069864	123195281	CLMP|ENST00000448775.3	-	123069864,123074701,123083084,123083679,123084511,123097794,123194912	123073774,123074843,123083207,123083847,123084713,123097952,123195281	0.998410
gastroesophageal_sphincter_female_adult_51_years	chr21	8864039	8864076	8864075	+	RAMPAGE_only	3	3	11	0.508900	2.921928	chr21	8864120	8864411	SINE|Alu|AluY	+	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	0.909091
gastroesophageal_sphincter_female_adult_51_years	chr5	149412712	149412739	149412712	+	RAMPAGE_only	2	2	11	0.508900	2.721928	chr5	149412487	149412789	SINE|Alu|AluSx3	+	chr5	149406962	149414097	CARMN|ENST00000518014.1	+	149406962,149410161	149408157,149414097	0.909091
gastroesophageal_sphincter_female_adult_51_years	chr13	27445107	27445108	27445107	-	RAMPAGE_only	11	16	16	0.740218	3.773557	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.937500
gastroesophageal_sphincter_female_adult_51_years	chr19	52215790	52215815	52215814	+	RAMPAGE_only	3	3	8	0.370109	2.750000	chr19	52215807	52215838	LINE|L2|L2b	-	chr19	52201092	52226417	PPP2R1A|ENST00000462990.5	+	52201092,52201943,52205962,52211259,52212685,52212954,52215778,52216003,52216528,52219690,52220188,52220978,52222098,52225716,52225964	52201694,52202034,52206063,52211492,52212833,52213110,52215893,52216074,52216663,52219864,52220249,52221133,52222241,52225808,52226417	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr21	28048446	28048447	28048446	+	High_confidence	407	411	444	20.541047	4.551146	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.979730
gastroesophageal_sphincter_female_adult_51_years	chr3	188883194	188883668	188883667	+	RAMPAGE_only	55	55	448	20.726101	6.517079	chr3	188883450	188883754	SINE|Alu|AluSc	+	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr2	187529426	187529461	187529458	-	RAMPAGE_only	5	6	20	0.925272	3.681881	chr2	187529293	187529670	LTR|ERVL-MaLR|MLT1B	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.850000
gastroesophageal_sphincter_female_adult_51_years	chr4	119217604	119217624	119217623	+	RAMPAGE_only	9	9	17	0.786482	3.616875	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212742	119294746	STRG.35398.2	+	119212742,119214069,119217549,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119212873,119214222,119217673,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119294746	0.941176
gastroesophageal_sphincter_female_adult_51_years	chr5	14653390	14653391	14653390	-	High_confidence	39	40	40	1.850545	4.343632	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.950000
gastroesophageal_sphincter_female_adult_51_years	chr13	48580937	48580938	48580937	-	High_confidence	4	4	7	0.323845	2.807355	chr13	48580763	48581196	LTR|ERVL-MaLR|THE1B	-	chr13	48576973	48580901	LINC00462|NR_051983.1	-	48576973,48578012,48580840	48577859,48578088,48580901	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr2	201115966	201116019	201116007	+	High_confidence	10	10	46	2.128126	4.544538	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.934783
gastroesophageal_sphincter_female_adult_51_years	chr5	40551566	40551567	40551566	+	High_confidence	40	43	46	2.128126	4.672230	chr5	40551357	40551898	LTR|ERVL|MLT2A2	+	chr5	40551698	40551949	STRG.39357.1	+	40551698	40551949	0.826087
gastroesophageal_sphincter_female_adult_51_years	chr4	119059056	119059277	119059056	+	RAMPAGE_only	22	22	226	10.455578	5.161766	chr4	119058963	119059058	SINE|MIR|MIR3	+	chr4	119023470	119061247	SYNPO2|ENST00000504178.1	+	119023470,119026626,119029844,119057400	119023581,119027438,119031853,119061247	0.991150
gastroesophageal_sphincter_female_adult_51_years	chr12	69353531	69353554	69353531	+	RAMPAGE_only	7	8	18	0.832745	3.175123	chr12	69353494	69353787	SINE|Alu|AluY	-	chr12	69348353	69354233	LYZ|NM_000239.2	+	69348353,69350107,69352219,69353152	69348544,69350272,69352298,69354233	0.888889
gastroesophageal_sphincter_female_adult_51_years	chrX	147937497	147937519	147937518	+	RAMPAGE_only	3	3	10	0.462636	2.947703	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.126495.11	+	147940580,147943130,147944868,147945533,147948733	147940662,147943326,147945051,147945616,147950315	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr19	8810967	8810975	8810967	-	RAMPAGE_only	2	2	8	0.370109	2.750000	chr19	8810664	8811203	LTR|ERVL-MaLR|MLT1F	+	chr19	8809575	8822063	ZNF558|NM_001304350.1	-	8809575,8812560,8813126,8821179,8821441	8812063,8812643,8813222,8821306,8822063	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr8	27977120	27977126	27977125	-	High_confidence	99	127	207	9.576569	5.792489	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977116	STRG.61784.3	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977116	0.884058
gastroesophageal_sphincter_female_adult_51_years	chr2	227534913	227534934	227534913	+	RAMPAGE_only	2	2	9	0.416373	3.169925	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.888889
gastroesophageal_sphincter_female_adult_51_years	chr17	47067498	47067518	47067498	-	High_confidence	278	293	959	44.366810	5.882659	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.943691
gastroesophageal_sphincter_female_adult_51_years	chr9	110170695	110170878	110170767	+	RAMPAGE_only	19	28	241	11.149532	5.361761	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
gastroesophageal_sphincter_female_adult_51_years	chrX	16712889	16712959	16712889	-	High_confidence	8	8	30	1.387909	4.373557	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.966667
gastroesophageal_sphincter_female_adult_51_years	chr14	50159440	50159441	50159440	-	RAMPAGE_only	22	22	31	1.434172	4.542748	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr18	7946878	7946898	7946878	+	High_confidence	7	8	18	0.832745	3.169249	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.888889
gastroesophageal_sphincter_female_adult_51_years	chr2	73072193	73072234	73072233	-	High_confidence	5	5	18	0.832745	3.725481	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.888889
gastroesophageal_sphincter_female_adult_51_years	chr3	73520961	73520997	73520961	+	High_confidence	3	3	9	0.416373	3.169925	chr3	73520782	73520990	LINE|L2|L2	-	chr3	73520874	73570770	STRG.24878.1	+	73520874,73569194	73521643,73570770	0.555556
gastroesophageal_sphincter_female_adult_51_years	chr3	49468648	49468670	49468669	+	High_confidence	7	7	24	1.110327	3.827910	chr3	49468531	49468836	SINE|Alu|AluSx1	-	chr3	49468702	49535618	DAG1|NM_001177643.2	+	49468702,49510418,49530796	49469055,49510819,49535618	0.958333
gastroesophageal_sphincter_female_adult_51_years	chr15	77285007	77285024	77285007	-	RAMPAGE_only	2	2	9	0.416373	2.750000	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	11	11	11	0.508900	3.277613	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr17	7553615	7553616	7553615	+	RAMPAGE_only	5	6	8	0.370109	2.500000	chr17	7553468	7553656	SINE|MIR|MIR	-	chr17	7549777	7557574	TNFSF12|ENST00000462811.1	+	7549777,7550119,7550798,7550942,7556777,7557098	7549815,7550195,7550852,7550978,7556902,7557574	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr16	86490414	86490440	86490425	-	High_confidence	5	5	20	0.925272	3.681881	chr16	86490288	86490466	LTR|ERVL-MaLR|MLT1F1	-	chr16	86487705	86490879	FENDRR|ENST00000598996.2	-	86487705,86490852	86490513,86490879	0.600000
gastroesophageal_sphincter_female_adult_51_years	chr19	11356881	11356912	11356881	+	High_confidence	2	2	10	0.462636	2.921928	chr19	11356842	11356927	SINE|MIR|MIRc	+	chr19	11357695	11359894	PLPPR2|ENST00000588196.1	+	11357695,11359531	11357739,11359894	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr4	173521349	173521361	173521349	+	RAMPAGE_only	4	4	8	0.370109	2.750000	chr4	173521322	173521435	DNA|hAT-Charlie|MER5A	+	chr4	173528641	173594553	HAND2-AS1|ENST00000561655.2	+	173528641,173582704,173591072	173528839,173582878,173594553	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr3	180870518	180870519	180870518	-	High_confidence	13	14	19	0.879009	3.503258	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180869804	180870524	STRG.29346.1	-	180869804	180870524	0.631579
gastroesophageal_sphincter_female_adult_51_years	chr16	86490875	86490907	86490875	-	High_confidence	2	3	12	0.555163	3.277613	chr16	86490702	86490896	LINE|L1|L1MC5a	-	chr16	86487705	86490879	FENDRR|ENST00000598996.2	-	86487705,86490852	86490513,86490879	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr20	50130092	50130118	50130101	-	High_confidence	20	20	80	3.701089	5.350329	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50124043	50130107	STRG.116724.11	-	50124043,50127974,50129545,50130051	50125179,50128187,50129690,50130107	0.925000
gastroesophageal_sphincter_female_adult_51_years	chr9	128187879	128187903	128187899	-	RAMPAGE_only	5	5	15	0.693954	3.521641	chr9	128187633	128188001	LINE|L1|L1M5	+	chr9	128180798	128190467	CIZ1|ENST00000474442.1	-	128180798,128185546,128187862,128190328	128180814,128185776,128187934,128190467	0.733333
gastroesophageal_sphincter_female_adult_51_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	30	30	58	2.683290	4.125869	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.965517
gastroesophageal_sphincter_female_adult_51_years	chr16	15862843	15862886	15862843	-	RAMPAGE_only	4	4	14	0.647691	3.334679	chr16	15862762	15863014	LINE|L1|L1MC2	+	chr16	15703786	15857033	MYH11|ENST00000576790.6	-	15703786,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15786732,15798687,15823411,15838269,15857033	0.714286
gastroesophageal_sphincter_female_adult_51_years	chr8	53523862	53523907	53523862	-	High_confidence	11	11	45	2.081863	4.905692	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.977778
gastroesophageal_sphincter_female_adult_51_years	chr1	7913248	7913268	7913248	-	RAMPAGE_only	17	17	33	1.526699	4.413910	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.575758
gastroesophageal_sphincter_female_adult_51_years	chr1	242001506	242001525	242001506	-	High_confidence	2	3	10	0.462636	2.947703	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	242001586	STRG.10498.1	-	241995489,241998513,241998775,241998950,242001308	241996385,241998620,241998831,241999026,242001586	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr2	48479384	48479385	48479384	+	High_confidence	128	129	144	6.661961	6.173913	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48479394	48515385	STRG.13025.4	+	48479394,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515385	0.861111
gastroesophageal_sphincter_female_adult_51_years	chr2	241641020	241641044	241641020	+	RAMPAGE_only	6	6	19	0.879009	4.037401	chr2	241640468	241641268	LINE|L2|L2a	-	chr2	241637728	241659187	ATG4B|ENST00000430617.6	+	241637728,241651009,241651263,241653306,241653511,241654545,241655270,241659107	241637760,241651111,241651335,241653369,241653610,241654647,241655343,241659187	0.894737
gastroesophageal_sphincter_female_adult_51_years	chr14	68877515	68877537	68877536	-	RAMPAGE_only	10	10	24	1.110327	3.970176	chr14	68877500	68877754	SINE|MIR|MIR	-	chr14	68874322	68879022	ACTN1|ENST00000553882.1	-	68874322,68877081	68875017,68879022	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr1	147173215	147173250	147173249	+	High_confidence	2	2	8	0.370109	2.521641	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.750000
gastroesophageal_sphincter_female_adult_51_years	chr11	47414187	47414223	47414201	+	High_confidence	5	6	18	0.832745	3.454822	chr11	47413942	47414364	LINE|L2|L2b	+	chr11	47414436	47415416	SLC39A13|ENST00000527829.1	+	47414436,47414776,47415059	47414475,47414909,47415416	0.611111
gastroesophageal_sphincter_female_adult_51_years	chr11	12249200	12249228	12249215	+	RAMPAGE_only	3	4	14	0.647691	3.392747	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.785714
gastroesophageal_sphincter_female_adult_51_years	chr2	29114158	29114174	29114158	+	High_confidence	5	5	21	0.971536	3.546439	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr20	50267474	50267502	50267474	+	High_confidence	9	11	53	2.451972	4.551616	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.943396
gastroesophageal_sphincter_female_adult_51_years	chr7	38789812	38789813	38789812	-	RAMPAGE_only	7	7	7	0.323845	2.807355	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr17	41871775	41871791	41871790	-	RAMPAGE_only	4	5	8	0.370109	2.750000	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr5	997313	997319	997318	-	High_confidence	10	10	24	1.110327	3.568084	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr21	45184516	45184517	45184516	+	RAMPAGE_only	22	23	30	1.387909	4.548394	chr21	45184448	45184750	SINE|Alu|AluJb	-	chr21	45180435	45226559	STRG.118975.9	+	45180435,45182584,45183361,45184473,45184922,45204554,45220835,45222017,45225546	45180444,45182753,45183510,45184593,45185091,45204736,45221014,45224110,45226559	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr9	125337360	125337392	125337391	+	RAMPAGE_only	2	2	8	0.370109	2.750000	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125298921	125362746	GAPVD1|ENST00000312123.13	+	125298921,125301982,125305062,125307412,125307690,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176,125342218,125346818,125349389,125350294,125350712,125354653,125355643,125359419,125360527,125362605	125299106,125302826,125305149,125307547,125307880,125312612,125321499,125323923,125326589,125330218,125332060,125332629,125337095,125337591,125341264,125342299,125346941,125349519,125350404,125350872,125354841,125355857,125359492,125360725,125362746	0.625000
gastroesophageal_sphincter_female_adult_51_years	chr10	47310701	47310702	47310701	+	RAMPAGE_only	10	10	12	0.555163	3.251629	chr10	47310748	47310844	SINE|MIR|MIR	+	chr10	47300385	47313547	GDF10|ENST00000580279.1	+	47300385,47309795,47312600	47300970,47310721,47313547	1.000000
gastroesophageal_sphincter_female_adult_51_years	chrX	11351615	11351637	11351636	-	RAMPAGE_only	5	5	13	0.601427	3.392747	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.615385
gastroesophageal_sphincter_female_adult_51_years	chr11	11118741	11118742	11118741	+	High_confidence	9	10	11	0.508900	3.121928	chr11	11118609	11118909	LTR|ERVL-MaLR|MLT1L	-	chr11	11117853	11183611	AC111188.1|ENST00000525758.1	+	11117853,11120523,11167822,11169080,11179906,11182326,11183362	11117949,11120535,11168157,11169198,11180004,11183251,11183611	0.727273
gastroesophageal_sphincter_female_adult_51_years	chr19	47751085	47751103	47751102	+	RAMPAGE_only	5	5	17	0.786482	3.807764	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47745564	47757057	NOP53|ENST00000600410.5	+	47745564,47746966,47750177,47750907,47751519,47752511,47755347,47755755,47756687,47756998	47745783,47747031,47750286,47751107,47751590,47754891,47755523,47756604,47756744,47757057	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr4	87524562	87524579	87524572	-	RAMPAGE_only	21	29	81	3.747353	5.657964	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87494416	87528619	SPARCL1|ENST00000535835.5	-	87494416,87494980,87499520,87504821,87528554	87494598,87495127,87499585,87504923,87528619	0.617284
gastroesophageal_sphincter_female_adult_51_years	chr2	46903754	46903813	46903770	-	RAMPAGE_only	5	5	22	1.017800	3.572624	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr2	186602127	186602142	186602127	+	RAMPAGE_only	3	3	9	0.416373	2.503258	chr2	186602116	186602175	LINE|RTE-BovB|MamRTE1	-	chr2	186600204	186677441	ITGAV|ENST00000433736.6	+	186600204,186602020,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186600381,186602151,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186677441	0.888889
gastroesophageal_sphincter_female_adult_51_years	chr7	53811934	53811942	53811934	-	High_confidence	10	10	24	1.110327	4.004886	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.708333
gastroesophageal_sphincter_female_adult_51_years	chr2	11201309	11201353	11201309	-	RAMPAGE_only	10	10	48	2.220654	4.897300	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.937500
gastroesophageal_sphincter_female_adult_51_years	chr21	45563114	45563158	45563152	-	High_confidence	7	10	37	1.711754	4.479143	chr21	45562422	45564060	LINE|L1|L1MC3	+	chr21	45562771	45563149	STRG.119139.1	-	45562771	45563149	0.756757
gastroesophageal_sphincter_female_adult_51_years	chr16	30354620	30354680	30354679	-	High_confidence	9	10	23	1.064063	4.070656	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.913043
gastroesophageal_sphincter_female_adult_51_years	chr6	108960797	108960833	108960797	+	High_confidence	4	5	14	0.647691	3.392747	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108960824	108974847	STRG.50608.1	+	108960824,108961571,108962013,108964179,108964979,108973356	108960927,108961694,108962127,108964312,108965140,108974847	0.928571
gastroesophageal_sphincter_female_adult_51_years	chr14	57274823	57274853	57274842	+	RAMPAGE_only	2	2	8	0.370109	2.750000	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr12	109179279	109179286	109179279	+	RAMPAGE_only	5	5	14	0.647691	3.182006	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109139396	109260147	ACACB|ENST00000377854.9	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260147	1.000000
gastroesophageal_sphincter_female_adult_51_years	chrX	81262650	81262673	81262650	+	RAMPAGE_only	8	8	28	1.295381	3.883273	chrX	81262192	81262806	LINE|L1|L1MD3	+	chrX	81255493	81297516	SH3BGRL|ENST00000474113.1	+	81255493,81276983,81278330,81297194	81255643,81277169,81278411,81297516	0.928571
gastroesophageal_sphincter_female_adult_51_years	chr2	113625662	113625691	113625674	-	RAMPAGE_only	4	6	15	0.693954	3.235926	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	0.933333
gastroesophageal_sphincter_female_adult_51_years	chr1	171517803	171517814	171517813	+	RAMPAGE_only	8	8	18	0.832745	3.947703	chr1	171517862	171517949	DNA|hAT-Charlie|Charlie4a	+	chr1	171512031	171593511	PRRC2C|ENST00000426496.6	+	171512031,171513000,171514535,171515733,171517590,171522176,171523220,171523434,171524820,171527790,171532342,171535427,171536028,171537262,171539970,171545478,171550085,171557239,171561017,171566232,171566591,171568246,171571319,171574926,171577433,171579353,171579827,171583955,171584418,171587002,171587647,171588378,171591586	171512200,171513172,171514645,171515859,171517814,171522259,171523354,171523522,171524965,171527844,171532961,171535597,171536278,171537473,171542229,171545687,171550240,171558143,171561103,171566421,171566843,171568339,171571421,171575128,171577637,171579466,171579964,171584187,171584526,171587221,171587751,171588505,171593511	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr15	63046821	63046905	63046904	+	RAMPAGE_only	7	8	54	2.498235	4.718789	chr15	63046756	63046919	DNA|hAT-Charlie|MER5B	+	chr15	63042686	63047726	TPM1|ENST00000610733.1	+	63042686,63044026	63042943,63047726	0.944444
gastroesophageal_sphincter_female_adult_51_years	chr14	39093189	39093190	39093189	-	RAMPAGE_only	7	7	10	0.462636	2.503258	chr14	39092847	39093165	SINE|Alu|AluY	-	chr14	39031918	39088723	SEC23A|ENST00000537403.5	-	39031918,39039030,39040731,39042785,39045162,39048651,39055142,39061764,39063323,39064912,39067172,39074414,39075934,39085761,39086928,39087523	39033328,39039096,39040887,39042872,39045324,39048729,39055296,39061871,39063413,39064993,39067296,39074530,39076093,39085906,39087008,39088723	0.700000
gastroesophageal_sphincter_female_adult_51_years	chr2	173182183	173182218	173182183	+	RAMPAGE_only	6	6	14	0.647691	3.546594	chr2	173182099	173182382	LINE|L1|L1MB7	+	chr2	173160009	173191177	MAP3K20|ENST00000480606.1	+	173160009,173169804,173182853,173187557,173190894,173191039	173160407,173169892,173182955,173187623,173190923,173191177	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr11	65431244	65431337	65431336	+	RAMPAGE_only	33	33	77	3.562299	5.118687	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr2	48479481	48479482	48479481	+	High_confidence	26	26	30	1.387909	4.456565	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48479394	48515385	STRG.13025.4	+	48479394,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515385	0.933333
gastroesophageal_sphincter_female_adult_51_years	chr1	1655409	1655411	1655410	-	RAMPAGE_only	77	96	131	6.060534	6.296558	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.549618
gastroesophageal_sphincter_female_adult_51_years	chr11	65429548	65429604	65429548	+	RAMPAGE_only	6	6	54	2.498235	3.743798	chr11	65429519	65429591	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.981481
gastroesophageal_sphincter_female_adult_51_years	chr2	240022172	240022219	240022181	-	RAMPAGE_only	6	6	31	1.434172	3.527137	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.967742
gastroesophageal_sphincter_female_adult_51_years	chr4	152412494	152412529	152412494	-	High_confidence	11	12	52	2.405708	5.147820	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.980769
gastroesophageal_sphincter_female_adult_51_years	chr17	1659356	1659368	1659356	-	RAMPAGE_only	7	7	17	0.786482	3.750000	chr17	1659014	1659325	SINE|Alu|AluSx3	-	chr17	1650630	1684837	PRPF8|ENST00000572621.5	-	1650630,1651107,1651413,1651647,1653541,1653776,1655349,1656391,1656647,1658252,1658525,1659356,1659840,1660431,1660697,1660992,1661270,1661610,1661905,1673080,1673356,1673745,1674441,1675151,1675619,1675927,1676206,1676504,1676975,1677564,1678517,1678761,1679016,1679290,1679608,1680725,1680928,1681477,1681819,1682128,1683532,1684471	1650956,1651310,1651553,1651788,1653683,1654016,1655543,1656565,1656761,1658381,1658763,1659548,1660001,1660578,1660827,1661162,1661406,1661790,1662153,1673197,1673567,1673892,1674680,1675339,1675812,1676054,1676370,1676711,1677172,1677694,1678652,1678881,1679206,1679410,1679799,1680831,1681054,1681690,1682038,1682293,1683701,1684837	0.941176
gastroesophageal_sphincter_female_adult_51_years	chr8	32927967	32927977	32927967	+	RAMPAGE_only	13	13	28	1.295381	4.310443	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.785714
gastroesophageal_sphincter_female_adult_51_years	chr12	47753920	47753962	47753940	+	RAMPAGE_only	3	3	12	0.555163	3.251629	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47758577	47780307	SLC48A1|ENST00000547002.5	+	47758577,47760215,47772169,47779027,47780144	47758660,47760401,47772320,47779195,47780307	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr3	129156633	129156651	129156633	-	RAMPAGE_only	2	2	12	0.555163	3.095795	chr3	129156416	129156597	LINE|L1|L1MD	-	chr3	129134074	129161028	ISY1|ENST00000485703.1	-	129134074,129134831,129140367,129144067,129145760,129156632,129156854,129158507,129159153,129160972	129134195,129134954,129140485,129144189,129145873,129156675,129156920,129158559,129159176,129161028	0.750000
gastroesophageal_sphincter_female_adult_51_years	chr1	156252925	156252930	156252929	-	RAMPAGE_only	3	5	7	0.323845	2.807355	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156250032	156251380	SMG5|ENST00000476954.1	-	156250032,156250857	156250670,156251380	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr9	99023424	99023443	99023432	+	RAMPAGE_only	4	4	10	0.462636	3.121928	chr9	99023460	99023631	LINE|L1|L1MC5	+	chr9	98943712	99070792	COL15A1|NM_001855.4	+	98943712,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr1	192986903	192986924	192986920	-	RAMPAGE_only	2	4	10	0.462636	2.947703	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192935795	192957713	AL390957.1|ENST00000647436.1	-	192935795,192957303	192935903,192957713	0.800000
gastroesophageal_sphincter_female_adult_51_years	chr2	70257706	70257707	70257706	+	High_confidence	52	52	57	2.637026	4.831289	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.947368
gastroesophageal_sphincter_female_adult_51_years	chr8	2726956	2726963	2726956	+	High_confidence	10	11	23	1.064063	4.277613	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.695652
gastroesophageal_sphincter_female_adult_51_years	chr10	45000503	45000515	45000514	+	High_confidence	7	12	25	1.156590	4.175736	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.920000
gastroesophageal_sphincter_female_adult_51_years	chr9	129489063	129489126	129489125	+	High_confidence	27	33	88	4.071198	5.703417	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129512607	STRG.71161.2	+	129489106,129493415,129502396,129503322,129510290	129489299,129493595,129503139,129510118,129512607	0.897727
gastroesophageal_sphincter_female_adult_51_years	chrX	73841973	73841974	73841973	-	High_confidence	5	5	8	0.370109	3.000000	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.625000
gastroesophageal_sphincter_female_adult_51_years	chr16	14245647	14245648	14245647	+	RAMPAGE_only	5	5	7	0.323845	2.584963	chr16	14245645	14245696	SINE|tRNA|LFSINE_Vert	+	chr16	14186716	14266771	STRG.102395.4	+	14186716,14210242,14212353,14213544,14217125,14218819,14234145,14240236,14245527,14246472,14248925,14251861,14252364,14258100,14260908	14187035,14210308,14212409,14213620,14217287,14218998,14234283,14240484,14245660,14247507,14249081,14252023,14252502,14258161,14266771	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr20	25296841	25296965	25296855	+	RAMPAGE_only	8	8	85	3.932408	4.578377	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr19	10825164	10825216	10825215	+	RAMPAGE_only	6	6	24	1.110327	3.522055	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	0.958333
gastroesophageal_sphincter_female_adult_51_years	chr11	10690336	10690366	10690336	-	RAMPAGE_only	2	2	9	0.416373	3.000000	chr11	10690108	10690385	SINE|Alu|AluSz6	+	chr11	10576323	10693514	STRG.77585.1	-	10576323,10580454,10581866,10591547,10593491,10594145,10600917,10603119,10604404,10606741,10609727,10623777,10625965,10627715,10627972,10628750,10629537,10631990,10633967,10652024,10690264,10693461	10576575,10580589,10581986,10591612,10593599,10594195,10601059,10603251,10604545,10606772,10609851,10623856,10626583,10627760,10628025,10628828,10629711,10632061,10634071,10652182,10690369,10693514	0.888889
gastroesophageal_sphincter_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	122	122	122	5.644161	5.439249	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.901639
gastroesophageal_sphincter_female_adult_51_years	chr19	12800915	12800969	12800915	-	High_confidence	3	3	25	1.156590	4.003856	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr14	58424077	58424096	58424095	-	RAMPAGE_only	4	4	8	0.370109	2.500000	chr14	58423952	58424081	LINE|CR1|L3	-	chr14	58408879	58426515	STRG.94689.4	-	58408879,58410842,58411906,58424007,58426405	58409168,58410938,58411971,58424095,58426515	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr3	48421693	48421721	48421693	-	RAMPAGE_only	2	2	10	0.462636	3.169925	chr3	48421525	48421664	SINE|MIR|MIRb	-	chr3	48403853	48429463	PLXNB1|NM_002673.5	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48429252	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48429463	0.800000
gastroesophageal_sphincter_female_adult_51_years	chr16	16007379	16007390	16007389	+	RAMPAGE_only	5	6	10	0.462636	2.721928	chr16	16007245	16007523	SINE|Alu|AluSz	-	chr16	15949576	16143074	ABCC1|NM_004996.3	+	15949576,16007815,16009775,16014490,16016495,16033108,16036471,16044449,16045835,16048141,16052723,16056091,16068155,16071641,16076325,16079351,16083365,16086823,16090404,16102626,16106737,16111374,16114765,16121974,16124788,16125809,16131788,16134349,16136477,16138363,16141172	15949799,16007992,16009901,16014628,16016621,16033170,16036603,16044680,16046013,16048303,16052816,16056295,16068302,16071729,16076401,16079478,16083542,16086991,16090588,16102717,16106873,16111582,16115076,16122174,16124915,16125911,16131935,16134508,16136644,16138558,16143074	0.600000
gastroesophageal_sphincter_female_adult_51_years	chr1	202551994	202551995	202551994	+	RAMPAGE_only	4	6	6	0.277582	2.584963	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr2	3536866	3536904	3536867	-	High_confidence	8	14	74	3.423508	5.550604	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531999	3536873	STRG.10984.4	-	3531999,3533710,3536723	3532310,3534255,3536873	0.824324
gastroesophageal_sphincter_female_adult_51_years	chrX	136168194	136168209	136168194	+	High_confidence	18	18	33	1.526699	4.625000	chrX	136168049	136168241	SINE|MIR|MIR	-	chrX	136168193	136208575	FHL1|ENST00000434885.5	+	136168193,136169906,136206406,136207015,136207791,136208454	136168267,136169980,136206588,136207190,136207961,136208575	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr19	9658029	9658030	9658029	-	High_confidence	8	8	12	0.555163	2.855389	chr19	9657864	9657989	SINE|Alu|FLAM_C	-	chr19	9652820	9658261	STRG.111429.23	-	9652820,9656546,9658008,9658224	9653881,9656653,9658135,9658261	0.916667
gastroesophageal_sphincter_female_adult_51_years	chr4	103085353	103085401	103085384	-	RAMPAGE_only	3	3	10	0.462636	2.921928	chr4	103085151	103085336	DNA|hAT-Charlie|MER58A	-	chr4	103079478	103099808	BDH2|ENST00000464039.5	-	103079478,103082080,103082870,103085348,103091176,103092599,103095202,103096182,103098643,103099782	103079755,103082173,103082929,103086540,103091285,103092696,103095281,103096274,103099400,103099808	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr11	117836274	117836323	117836274	+	High_confidence	6	6	22	1.017800	4.095795	chr11	117836254	117836523	SINE|Alu|AluJb	-	chr11	117836294	117838061	STRG.82495.1	+	117836294,117837167	117836502,117838061	0.863636
gastroesophageal_sphincter_female_adult_51_years	chr20	35713458	35713471	35713470	-	High_confidence	7	7	16	0.740218	3.750000	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	1.000000
gastroesophageal_sphincter_female_adult_51_years	chrX	73994854	73994877	73994875	+	RAMPAGE_only	7	10	17	0.786482	3.577820	chrX	73994826	73995038	SINE|Alu|AluSp	-	chrX	73944594	74013092	STRG.123450.4	+	73944594,73994839,73998767,73998953,74004269	73944662,73994961,73998844,74000496,74013092	0.764706
gastroesophageal_sphincter_female_adult_51_years	chr20	3869064	3869066	3869064	+	RAMPAGE_only	8	9	13	0.601427	3.188722	chr20	3869006	3869168	SINE|Alu|AluJr4	-	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.846154
gastroesophageal_sphincter_female_adult_51_years	chr14	29666082	29666102	29666082	-	High_confidence	2	2	11	0.508900	3.121928	chr14	29665934	29666040	LINE|L1|L1PB3	-	chr14	29638295	29666158	PRKD1|ENST00000468370.5	-	29638295,29638693,29656475,29663698,29666076	29638566,29638904,29656499,29663859,29666158	0.909091
gastroesophageal_sphincter_female_adult_51_years	chr19	11539705	11539706	11539705	+	High_confidence	11	11	17	0.786482	3.734522	chr19	11539660	11539789	SINE|MIR|MIRb	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	0.882353
gastroesophageal_sphincter_female_adult_51_years	chr15	80059915	80059926	80059918	+	High_confidence	63	72	138	6.384379	5.274038	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059925	80138358	STRG.99937.6	+	80059925,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80098578,80120498,80121820,80122800,80131293,80138358	0.992754
gastroesophageal_sphincter_female_adult_51_years	chr21	33931224	33931225	33931224	+	High_confidence	5	5	8	0.370109	2.500000	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931213	33971186	LINC00649|ENST00000400353.6	+	33931213,33945809,33969236	33931267,33945895,33971186	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr14	50756739	50756753	50756739	-	RAMPAGE_only	2	2	9	0.416373	2.641604	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.888889
gastroesophageal_sphincter_female_adult_51_years	chr6	28354022	28354062	28354041	-	High_confidence	5	7	23	1.064063	3.375459	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329610	28354065	ZSCAN31|ENST00000444081.5	-	28329610,28336789,28337798,28353861	28329714,28336943,28337893,28354065	0.695652
gastroesophageal_sphincter_female_adult_51_years	chr2	86556657	86556669	86556668	-	RAMPAGE_only	3	3	8	0.370109	2.807355	chr2	86556435	86556899	LTR|ERVK|LTR22C0	+	chr2	86505774	86563166	CHMP3|ENST00000393773.7	-	86505774,86507478,86510357,86529217,86542251,86563092	86505949,86507593,86510479,86529397,86542312,86563166	0.750000
gastroesophageal_sphincter_female_adult_51_years	chr7	102822458	102822461	102822458	-	RAMPAGE_only	7	7	17	0.786482	3.734522	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.705882
gastroesophageal_sphincter_female_adult_51_years	chr19	19668138	19668174	19668173	+	High_confidence	4	5	13	0.601427	3.584963	chr19	19668164	19668579	LTR|ERV1|LTR21B	-	chr19	19668152	19683506	ZNF101|NM_001300949.1	+	19668152,19677863,19678725,19679180	19668207,19677986,19678786,19683506	0.923077
gastroesophageal_sphincter_female_adult_51_years	chr3	195688686	195688723	195688686	+	High_confidence	2	2	12	0.555163	3.277613	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688681	195708807	MUC20-OT1|ENST00000627562.2	+	195688681,195689338,195699029,195701379,195708133	195688797,195689438,195699207,195701495,195708807	0.583333
gastroesophageal_sphincter_female_adult_51_years	chr22	31082940	31082941	31082940	+	High_confidence	6	6	7	0.323845	2.584963	chr22	31082905	31083026	SINE|MIR|MIRc	-	chr22	31082859	31104623	SMTN|ENST00000619644.4	+	31082859,31083178,31087964,31088512,31088698,31088871,31089698,31090107,31090807,31090960,31091674,31093783,31095302,31095533,31096732,31096997,31097268,31098666,31099061,31099744,31104315	31083002,31083309,31088113,31088606,31088777,31088969,31090019,31090180,31090879,31091482,31091847,31093876,31095455,31095609,31096897,31097060,31097338,31098840,31099179,31099896,31104623	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr11	72217309	72217313	72217309	+	High_confidence	4	4	9	0.416373	2.500000	chr11	72217038	72217322	SINE|Alu|AluSx1	-	chr11	72216830	72221586	FOLR2|ENST00000321324.11	+	72216830,72218572,72220869,72221175,72221469	72216925,72218734,72221058,72221311,72221586	0.888889
gastroesophageal_sphincter_female_adult_51_years	chr4	114364910	114364964	114364914	-	High_confidence	61	61	144	6.661961	4.975258	chr4	114364772	114365325	LTR|ERVL-MaLR|MLT1E3	-	chr4	114334841	114364946	STRG.34974.1	-	114334841,114335128,114364807	114335026,114335244,114364946	0.923611
gastroesophageal_sphincter_female_adult_51_years	chr20	44696111	44696112	44696111	-	High_confidence	23	24	27	1.249118	4.163856	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.851852
gastroesophageal_sphincter_female_adult_51_years	chr22	36471190	36471212	36471211	+	High_confidence	18	19	48	2.220654	4.882045	chr22	36471205	36471377	LTR|ERVL|LTR86A2	+	chr22	36471984	36472431	STRG.120124.1	+	36471984	36472431	0.562500
gastroesophageal_sphincter_female_adult_51_years	chr20	3869486	3869519	3869486	+	RAMPAGE_only	3	3	28	1.295381	3.726474	chr20	3869472	3869587	SINE|Alu|AluJr4	-	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.892857
gastroesophageal_sphincter_female_adult_51_years	chr2	28664494	28664537	28664494	-	High_confidence	6	6	34	1.572963	4.663910	chr2	28664229	28664729	LTR|ERVL|LTR18B	+	chr2	28619036	28664512	STRG.12087.2	-	28619036,28664081	28622198,28664512	0.794118
gastroesophageal_sphincter_female_adult_51_years	chr19	34860633	34860654	34860633	-	High_confidence	4	4	16	0.740218	3.500000	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr1	153967486	153967512	153967486	+	High_confidence	10	11	32	1.480436	3.974695	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.906250
gastroesophageal_sphincter_female_adult_51_years	chr5	32403116	32403188	32403148	-	RAMPAGE_only	38	50	152	7.032070	5.365123	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.973684
gastroesophageal_sphincter_female_adult_51_years	chr8	99893444	99893445	99893444	-	High_confidence	12	13	13	0.601427	2.855389	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.923077
gastroesophageal_sphincter_female_adult_51_years	chr7	134432378	134432451	134432378	-	High_confidence	8	9	32	1.480436	4.152518	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.906250
gastroesophageal_sphincter_female_adult_51_years	chr22	42721228	42721282	42721262	-	High_confidence	6	6	25	1.156590	3.435755	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.760000
gastroesophageal_sphincter_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	49	49	49	2.266917	3.736832	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.959184
gastroesophageal_sphincter_female_adult_51_years	chr2	86482602	86482605	86482604	+	RAMPAGE_only	7	9	12	0.555163	3.418296	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr19	53874840	53874903	53874902	+	RAMPAGE_only	250	251	375	17.348857	5.490424	chr19	53874763	53874953	SINE|Alu|AluSx	-	chr19	53869405	53876435	MYADM|ENST00000391769.2	+	53869405,53869753,53873527	53869598,53869838,53876435	0.989333
gastroesophageal_sphincter_female_adult_51_years	chr4	79086120	79086123	79086120	+	High_confidence	2	2	7	0.323845	2.521641	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.714286
gastroesophageal_sphincter_female_adult_51_years	chrX	103577211	103577212	103577211	+	High_confidence	13	19	19	0.879009	3.826875	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr1	155478035	155478044	155478043	-	RAMPAGE_only	5	5	11	0.508900	2.921928	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.636364
gastroesophageal_sphincter_female_adult_51_years	chr9	121281886	121281892	121281891	+	RAMPAGE_only	8	8	13	0.601427	3.700440	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.615385
gastroesophageal_sphincter_female_adult_51_years	chr2	206161377	206161466	206161465	+	High_confidence	16	17	94	4.348780	5.777785	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	0.680851
gastroesophageal_sphincter_female_adult_51_years	chr21	28674847	28674854	28674847	-	High_confidence	3	3	9	0.416373	2.947703	chr21	28674675	28675025	LTR|ERVL-MaLR|MLT1A0	-	chr21	28439345	28674848	AF165147.1|ENST00000433310.6	-	28439345,28446289,28577218,28626584,28674646	28444809,28446472,28577380,28626676,28674848	0.777778
gastroesophageal_sphincter_female_adult_51_years	chr1	31703836	31703837	31703836	-	High_confidence	7	7	7	0.323845	2.807355	chr1	31703656	31703803	SINE|MIR|MIR3	-	chr1	31698489	31704060	COL16A1|ENST00000532877.1	-	31698489,31699812,31700040,31703836	31698606,31699930,31700115,31704060	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr6	79631441	79631442	79631441	+	High_confidence	8	8	11	0.508900	2.845351	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr10	93431409	93431429	93431428	-	RAMPAGE_only	2	3	8	0.370109	2.521641	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr10	65570509	65570522	65570509	+	High_confidence	3	3	11	0.508900	3.321928	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570501	65585801	LINC01515|ENST00000599409.5	+	65570501,65571424,65572934,65585484,65585664	65570759,65571579,65573056,65585567,65585801	0.545455
gastroesophageal_sphincter_female_adult_51_years	chr3	33864065	33864116	33864090	+	High_confidence	4	4	16	0.740218	3.506891	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33863895	33866468	PDCD6IP|ENST00000473593.1	+	33863895,33865242,33866350	33864129,33865430,33866468	0.562500
gastroesophageal_sphincter_female_adult_51_years	chr6	78998272	78998282	78998272	-	RAMPAGE_only	3	3	13	0.601427	3.418296	chr6	78998067	78998230	LINE|L1|L1ME4a	-	chr6	78935866	79078236	PHIP|ENST00000275034.4	-	78935866,78945299,78946000,78946710,78947622,78954813,78955231,78955612,78958474,78961689,78963096,78965702,78965944,78969834,78970048,78970780,78978591,78982885,78985351,78988208,78990867,78997413,78998253,79001898,79003729,79015081,79015629,79016543,79017345,79017482,79019088,79025518,79025942,79042842,79060477,79060667,79077447,79077699,79077854,79078028	78941330,78945497,78946260,78946874,78947775,78954963,78955282,78955682,78958600,78961810,78963252,78965764,78966056,78969917,78970173,78970888,78978711,78983117,78985428,78988349,78990985,78997597,78998391,79002124,79003858,79015216,79015783,79016642,79017386,79017583,79019159,79025619,79026164,79043003,79060576,79060818,79077507,79077729,79077913,79078236	0.769231
gastroesophageal_sphincter_female_adult_51_years	chrX	73837449	73837504	73837449	-	RAMPAGE_only	4	7	30	1.387909	3.133776	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.966667
gastroesophageal_sphincter_female_adult_51_years	chr15	57451514	57451565	57451564	+	RAMPAGE_only	3	5	15	0.693954	3.378783	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57377163	57544631	STRG.98592.2	+	57377163,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472	57377165,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544631	0.933333
gastroesophageal_sphincter_female_adult_51_years	chr5	34244811	34244816	34244815	-	RAMPAGE_only	6	8	16	0.740218	3.323231	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34218343	AC138409.2|ENST00000507274.1	-	34175821,34179012,34182679,34218294	34175957,34179097,34182867,34218343	0.562500
gastroesophageal_sphincter_female_adult_51_years	chr9	20658312	20658349	20658338	+	High_confidence	14	14	54	2.498235	4.739913	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.740741
gastroesophageal_sphincter_female_adult_51_years	chr3	156540571	156540575	156540571	-	RAMPAGE_only	414	472	884	40.897039	3.397274	chr3	156540323	156540630	SINE|Alu|AluY	+	chr3	156539552	156554125	SSR3|NM_001308205.1	-	156539552,156544307,156548904,156553654,156553992	156543269,156544439,156549003,156553781,156554125	0.966063
gastroesophageal_sphincter_female_adult_51_years	chr1	8740408	8740409	8740408	-	RAMPAGE_only	4	4	6	0.277582	2.584963	chr1	8740177	8741224	DNA|TcMar-Tigger|Tigger3b	-	chr1	8464969	8753838	RERE|ENST00000480342.5	-	8464969,8495062,8497404,8508626,8541213,8556474,8557417,8614560,8624309,8655972,8753430	8466023,8495162,8497529,8508675,8541318,8556571,8557523,8614686,8624380,8656441,8753838	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr9	121313981	121314021	121314020	+	RAMPAGE_only	152	159	877	40.573193	5.896978	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.993158
gastroesophageal_sphincter_female_adult_51_years	chr9	68975836	68975855	68975842	-	High_confidence	14	15	60	2.775817	4.719205	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.583333
gastroesophageal_sphincter_female_adult_51_years	chr11	108923704	108923737	108923736	+	RAMPAGE_only	2	2	7	0.323845	2.521641	chr11	108923524	108923886	LINE|L2|L2c	-	chr11	108929518	108940925	DDX10|ENST00000534221.1	+	108929518,108940245	108929708,108940925	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr10	72355145	72355153	72355145	-	High_confidence	6	6	17	0.786482	3.750000	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.882353
gastroesophageal_sphincter_female_adult_51_years	chr6	17779597	17779609	17779608	-	RAMPAGE_only	2	2	9	0.416373	2.500000	chr6	17779257	17779571	SINE|Alu|AluSp	-	chr6	17759253	17794697	KIF13A|ENST00000502297.5	-	17759253,17764154,17771113,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571	17760877,17764946,17771218,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794697	0.888889
gastroesophageal_sphincter_female_adult_51_years	chr17	77390278	77390291	77390290	+	RAMPAGE_only	6	6	13	0.601427	2.625815	chr17	77390212	77390366	SINE|Alu|AluYc	+	chr17	77380122	77402483	SEPT9|ENST00000589140.1	+	77380122,77402058	77380249,77402483	0.769231
gastroesophageal_sphincter_female_adult_51_years	chr11	111097312	111097352	111097343	-	High_confidence	3	5	20	0.925272	3.531631	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr2	55267598	55267623	55267622	-	High_confidence	4	4	9	0.416373	2.750000	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.888889
gastroesophageal_sphincter_female_adult_51_years	chr11	77175291	77175303	77175302	+	High_confidence	11	11	27	1.249118	4.243856	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175258	77190852	STRG.80223.1	+	77175258,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190852	0.925926
gastroesophageal_sphincter_female_adult_51_years	chr17	41871699	41871746	41871745	-	RAMPAGE_only	3	3	13	0.601427	3.251629	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.846154
gastroesophageal_sphincter_female_adult_51_years	chr3	188225403	188225459	188225403	+	High_confidence	10	10	46	2.128126	4.605757	chr3	188225342	188225427	SINE|MIR|MIR3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.956522
gastroesophageal_sphincter_female_adult_51_years	chr6	77369144	77369167	77369166	-	High_confidence	37	56	150	6.939543	5.837655	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77151890	77369156	STRG.49183.1	-	77151890,77271339,77273026,77350621,77368885	77151974,77271493,77273307,77350734,77369156	0.873333
gastroesophageal_sphincter_female_adult_51_years	chr7	107580506	107580507	107580506	+	High_confidence	4	4	6	0.277582	2.584963	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr1	12356414	12356499	12356414	+	High_confidence	8	8	33	1.526699	3.243888	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12356350	12510346	VPS13D|ENST00000646411.1	+	12356350,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12356524,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	0.878788
gastroesophageal_sphincter_female_adult_51_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	29	29	31	1.434172	3.866433	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.935484
gastroesophageal_sphincter_female_adult_51_years	chr2	200889135	200889157	200889153	-	High_confidence	19	20	55	2.544499	5.185353	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889154	PPIL3|ENST00000392283.8	-	200870955,200876918,200881420,200882341,200885697,200887612,200888955	200871521,200877037,200881488,200882435,200885772,200887685,200889154	0.836364
gastroesophageal_sphincter_female_adult_51_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	9	9	12	0.555163	3.277613	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100738442	100913524	ARHGAP42|ENST00000534060.5	+	100738442,100770342,100795104,100816714,100859553,100913451	100738498,100770438,100795166,100816856,100859625,100913524	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr7	107580245	107580267	107580245	+	High_confidence	812	818	3926	181.630966	6.708973	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.955935
gastroesophageal_sphincter_female_adult_51_years	chr11	62600186	62600196	62600195	-	High_confidence	3	3	8	0.370109	2.807355	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.625000
gastroesophageal_sphincter_female_adult_51_years	chr8	2727243	2727272	2727243	+	High_confidence	8	8	31	1.434172	4.481728	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.741935
gastroesophageal_sphincter_female_adult_51_years	chr8	143558019	143558020	143558019	+	High_confidence	11	11	11	0.508900	3.095795	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.909091
gastroesophageal_sphincter_female_adult_51_years	chr10	133369997	133370021	133370020	-	RAMPAGE_only	3	4	8	0.370109	2.521641	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr4	128428000	128428001	128428000	+	High_confidence	5	5	8	0.370109	2.500000	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.750000
gastroesophageal_sphincter_female_adult_51_years	chr15	90467502	90467511	90467502	+	RAMPAGE_only	2	2	7	0.323845	2.584963	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.714286
gastroesophageal_sphincter_female_adult_51_years	chr19	11196112	11196213	11196140	-	High_confidence	49	49	349	16.146003	6.268061	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.942693
gastroesophageal_sphincter_female_adult_51_years	chr10	71615177	71615197	71615196	+	High_confidence	7	7	15	0.693954	2.842371	chr10	71614899	71615319	DNA|hAT-Charlie|MER113	-	chr10	71615213	71712925	STRG.73982.11	+	71615213,71615503,71617204,71635237,71643860,71645830,71646458,71675111,71677455,71679386,71682444,71687646,71690467,71694146,71695417,71702021,71702548,71704910,71706896,71709097,71712664	71615380,71615616,71617393,71635297,71643866,71645980,71646617,71675176,71677693,71679492,71682572,71687719,71690584,71694259,71695525,71702211,71702694,71705130,71707049,71709211,71712925	0.866667
gastroesophageal_sphincter_female_adult_51_years	chrX	136167003	136167005	136167003	+	High_confidence	78	113	150	6.939543	5.799495	chrX	136166859	136167051	SINE|MIR|MIR	-	chrX	136167003	136208575	FHL1|ENST00000452016.5	+	136167003,136169906,136206406,136207015,136207791,136208454	136167077,136169980,136206588,136207190,136207961,136208575	0.546667
gastroesophageal_sphincter_female_adult_51_years	chr1	20639917	20639982	20639954	+	RAMPAGE_only	9	9	54	2.498235	4.592463	chr1	20640002	20640112	LINE|L2|L2b	+	chr1	20638128	20651316	PINK1|ENST00000492302.1	+	20638128,20644489,20645559,20648504,20650433	20639992,20644672,20645723,20649231,20651316	0.981481
gastroesophageal_sphincter_female_adult_51_years	chr2	217903838	217903857	217903838	-	High_confidence	3	4	7	0.323845	2.584963	chr2	217903613	217903790	LINE|CR1|L3b	-	chr2	217859228	217903813	TNS1|ENST00000310858.10	-	217859228,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217903602	217859701,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217903813	0.714286
gastroesophageal_sphincter_female_adult_51_years	chr14	32402135	32402136	32402135	+	RAMPAGE_only	32	32	33	1.526699	3.491729	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32428362	32773829	STRG.93469.2	+	32428362,32433459,32535553,32545229,32577119,32599409,32600628,32678310,32695989,32732453,32735657,32773677	32428565,32433817,32535805,32546999,32577242,32599506,32600792,32678459,32696110,32732600,32735882,32773829	0.969697
gastroesophageal_sphincter_female_adult_51_years	chr10	63594791	63594847	63594825	+	RAMPAGE_only	5	8	33	1.526699	4.390320	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	0.909091
gastroesophageal_sphincter_female_adult_51_years	chr17	35809999	35810019	35810018	+	High_confidence	5	5	9	0.416373	2.500000	chr17	35809910	35810033	SINE|MIR|MIR1_Amn	+	chr17	35809505	35824289	TAF15|ENST00000605197.2	+	35809505,35817715,35820023,35820163,35820331,35822639,35824077	35809576,35817755,35820075,35820248,35820437,35822833,35824289	0.555556
gastroesophageal_sphincter_female_adult_51_years	chr12	53464756	53464774	53464763	+	RAMPAGE_only	2	2	9	0.416373	2.750000	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.777778
gastroesophageal_sphincter_female_adult_51_years	chr11	65431402	65431422	65431420	+	RAMPAGE_only	14	20	32	1.480436	4.348394	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.937500
gastroesophageal_sphincter_female_adult_51_years	chr16	27333283	27333284	27333283	+	RAMPAGE_only	5	5	8	0.370109	2.750000	chr16	27333168	27333399	LINE|CR1|L3	-	chr16	27340203	27355876	STRG.102230.4	+	27340203,27342120,27344868,27346466,27352539,27355807	27340273,27342259,27345020,27346618,27352696,27355876	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr11	64773490	64773499	64773490	-	RAMPAGE_only	3	3	6	0.277582	2.584963	chr11	64773369	64773442	LINE|RTE-BovB|MamRTE1	-	chr11	64769277	64770639	SF1|ENST00000486960.5	-	64769277,64769425,64769963,64770255	64769338,64769609,64770053,64770639	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr11	72111415	72111441	72111434	-	High_confidence	2	2	8	0.370109	2.521641	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72107158	72111443	ANAPC15|ENST00000543050.5	-	72107158,72110087,72110543,72111156,72111411	72107605,72110225,72110603,72111286,72111443	0.625000
gastroesophageal_sphincter_female_adult_51_years	chr21	28048403	28048414	28048413	+	High_confidence	6	6	10	0.462636	2.721928	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048413	28137609	LOC284825|NR_126010.1	+	28048413,28102549,28130529,28135313,28136689	28048537,28102769,28130622,28135708,28137609	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr22	37755641	37755658	37755641	+	RAMPAGE_only	6	7	26	1.202854	3.584303	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	0.884615
gastroesophageal_sphincter_female_adult_51_years	chr13	113187328	113187339	113187336	-	High_confidence	3	3	11	0.508900	2.721928	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.818182
gastroesophageal_sphincter_female_adult_51_years	chr15	94099318	94099399	94099352	-	High_confidence	9	10	39	1.804281	4.907072	chr15	94099050	94099714	LINE|L1|L1M4a2	+	chr15	94064464	94099340	STRG.100625.1	-	94064464,94066768,94099256	94065292,94066879,94099340	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr16	27330079	27330117	27330079	+	RAMPAGE_only	2	2	13	0.601427	3.392747	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27313933	27363903	IL4R|ENST00000568746.5	+	27313933,27340185,27341069,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27314020,27340273,27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27363903	0.615385
gastroesophageal_sphincter_female_adult_51_years	chr22	49657346	49657356	49657348	-	High_confidence	3	5	9	0.416373	2.641604	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.555556
gastroesophageal_sphincter_female_adult_51_years	chr12	56592762	56592787	56592786	+	RAMPAGE_only	2	2	8	0.370109	2.750000	chr12	56592506	56592810	SINE|Alu|AluSx1	-	chr12	56521928	56596196	RBMS2|ENST00000262031.9	+	56521928,56562416,56568974,56569898,56571697,56581183,56581398,56581832,56582058,56586848,56587553,56588293,56588931,56589139	56522089,56562583,56569033,56569990,56571855,56581263,56581508,56581879,56582152,56586926,56587664,56588374,56589018,56596196	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr19	55643104	55643183	55643182	+	RAMPAGE_only	9	9	46	2.128126	3.835483	chr19	55643125	55643224	SINE|MIR|MIRc	+	chr19	55642096	55643470	ZNF580|NM_001163423.1	+	55642096,55642496	55642148,55643470	0.913043
gastroesophageal_sphincter_female_adult_51_years	chr1	54172696	54172717	54172696	-	RAMPAGE_only	2	2	7	0.323845	2.584963	chr1	54172537	54172738	LINE|L2|L2b	+	chr1	54138994	54153770	CDCP2|ENST00000371330.1	-	54138994,54141097,54144465,54152843	54140106,54141433,54144813,54153770	0.714286
gastroesophageal_sphincter_female_adult_51_years	chr17	19386333	19386388	19386334	-	High_confidence	24	29	72	3.330981	5.383408	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr10	5651949	5651971	5651949	-	High_confidence	4	4	9	0.416373	2.947703	chr10	5651721	5652025	SINE|Alu|AluJb	+	chr10	5648971	5651568	ASB13|ENST00000482921.1	-	5648971,5651212	5649104,5651568	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr6	44229590	44229616	44229590	+	High_confidence	6	6	12	0.555163	3.251629	chr6	44229546	44229598	LINE|CR1|L3b	-	chr6	44229770	44232428	SLC29A1|ENST00000646251.1	+	44229770,44229906,44230366,44230567,44230810,44231363,44231997,44232342	44229791,44230046,44230481,44230665,44230889,44231461,44232106,44232428	0.750000
gastroesophageal_sphincter_female_adult_51_years	chr11	3380960	3380961	3380960	+	High_confidence	28	28	30	1.387909	4.378783	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr9	35657477	35657522	35657477	+	High_confidence	2	3	17	0.786482	3.875000	chr9	35657503	35657740	SINE|Alu|AluJb	+	chr9	35658289	35661503	CCDC107|NM_174923.2	+	35658289,35658575,35660400,35660556,35660745	35658485,35658727,35660461,35660647,35661503	0.823529
gastroesophageal_sphincter_female_adult_51_years	chr1	54413479	54413493	54413492	-	High_confidence	4	4	10	0.462636	2.921928	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54412707	54413466	SSBP3|ENST00000448572.1	-	54412707,54413080,54413355	54412877,54413253,54413466	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr14	50766307	50766335	50766316	-	High_confidence	3	3	10	0.462636	2.947703	chr14	50766057	50766321	SINE|MIR|MIR	-	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr2	173182241	173182251	173182250	+	RAMPAGE_only	4	4	9	0.416373	2.725481	chr2	173182099	173182382	LINE|L1|L1MB7	+	chr2	173075958	173268010	MAP3K20|ENST00000375213.7	+	173075958,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173229688,173232191,173232319,173238372,173239403,173258698,173261062,173263744,173266049	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173229733,173232222,173232459,173238435,173239496,173258815,173261137,173263895,173268010	1.000000
gastroesophageal_sphincter_female_adult_51_years	chrX	147937559	147937599	147937598	+	RAMPAGE_only	4	4	14	0.647691	3.378783	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.126495.11	+	147940580,147943130,147944868,147945533,147948733	147940662,147943326,147945051,147945616,147950315	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr11	117811482	117811501	117811500	-	RAMPAGE_only	5	6	13	0.601427	2.815072	chr11	117810272	117812670	LTR|ERV1|HERVH-int	+	chr11	117776808	117817525	DSCAML1|ENST00000525836.1	-	117776808,117780492,117817389	117776937,117780810,117817525	0.923077
gastroesophageal_sphincter_female_adult_51_years	chr2	227164620	227164645	227164620	+	High_confidence	16	16	26	1.202854	4.363713	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.730769
gastroesophageal_sphincter_female_adult_51_years	chr14	44912790	44912842	44912790	-	High_confidence	4	4	18	0.832745	3.572469	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44831398	44912617	STRG.94050.1	-	44831398,44899229,44911756,44912452	44831690,44899313,44911860,44912617	0.777778
gastroesophageal_sphincter_female_adult_51_years	chr8	11808234	11808255	11808234	+	High_confidence	2	4	8	0.370109	2.750000	chr8	11807810	11808255	LTR|ERV1|MER31B	-	chr8	11808416	11838967	FDFT1|ENST00000525954.5	+	11808416,11809666,11821749,11826023,11830243,11831517,11838387	11808891,11809850,11821878,11826215,11830420,11831670,11838967	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr11	117817480	117817514	117817480	-	High_confidence	4	4	23	1.064063	3.914866	chr11	117817399	117817493	DNA|hAT-Charlie|MER5B	+	chr11	117776808	117817525	DSCAML1|ENST00000525836.1	-	117776808,117780492,117817389	117776937,117780810,117817525	0.782609
gastroesophageal_sphincter_female_adult_51_years	chr16	81181319	81181331	81181330	-	High_confidence	11	11	18	0.832745	3.969816	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.888889
gastroesophageal_sphincter_female_adult_51_years	chr3	28347653	28347654	28347653	-	High_confidence	10	10	11	0.508900	3.321928	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.818182
gastroesophageal_sphincter_female_adult_51_years	chr8	56559496	56559497	56559496	-	High_confidence	241	242	290	13.416449	7.001862	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.506897
gastroesophageal_sphincter_female_adult_51_years	chr11	90251204	90251205	90251204	+	High_confidence	8	10	10	0.462636	2.921928	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr5	149431843	149432173	149432013	+	RAMPAGE_only	12	15	190	8.790087	5.353407	chr5	149431916	149432211	SINE|Alu|AluSx3	+	chr5	149406963	149432835	STRG.44471.7	+	149406963,149421480,149424089,149427079	149407078,149421601,149424397,149432835	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr12	28825945	28825950	28825945	-	High_confidence	7	8	17	0.786482	3.690117	chr12	28825676	28826170	LTR|ERVL|MLT2B3	-	chr12	28821974	28825831	AC022081.1|ENST00000537327.1	-	28821974,28825697	28822273,28825831	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr4	54264964	54265041	54265040	+	RAMPAGE_only	11	11	63	2.914608	3.703515	chr4	54265070	54265216	SINE|MIR|MIR3	+	chr4	54229310	54281978	PDGFRA|ENST00000509490.5	+	54229310,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54278818,54280315,54281580	54229415,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54278971,54280482,54281978	0.984127
gastroesophageal_sphincter_female_adult_51_years	chr1	1721637	1721638	1721637	-	High_confidence	11	12	17	0.786482	3.875000	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.529412
gastroesophageal_sphincter_female_adult_51_years	chr9	92536601	92536602	92536601	-	High_confidence	37	40	43	1.989336	4.393943	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.860465
gastroesophageal_sphincter_female_adult_51_years	chr7	18110316	18110317	18110316	+	RAMPAGE_only	16	17	23	1.064063	4.106603	chr7	18110265	18110868	LINE|L2|L2c	-	chr7	18086948	18666923	HDAC9|ENST00000417496.6	+	18086948,18162228,18458841,18496261,18585280,18590344,18591515,18593907,18634626,18644670,18647784,18648465,18666212	18087213,18162349,18458901,18496324,18585522,18590486,18591642,18594029,18634742,18644793,18647998,18648683,18666923	0.826087
gastroesophageal_sphincter_female_adult_51_years	chr14	101995275	101995288	101995285	+	RAMPAGE_only	3	3	10	0.462636	2.641604	chr14	101995329	101995627	SINE|Alu|AluY	+	chr14	101964572	102011733	DYNC1H1|ENST00000643684.1	+	101964572,101975711,101979318,101979718,101980363,101983018,101983381,101985686,101987452,101988702,101991526,101994183,101994672,101994985,101995180,101997034,101999988,102000285,102000953,102001144,102001534,102002536,102002791,102004517,102005041,102005887,102007007,102008177,102009842,102010275,102010739	101964947,101975799,101979492,101979974,101980550,101983290,101983609,101986763,101987632,101988852,101991673,101994324,101994849,101995096,101995300,101997274,102000144,102000399,102001064,102001354,102001681,102002703,102002965,102004950,102005236,102006170,102007108,102008337,102010086,102010459,102011733	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr21	8817798	8817805	8817798	+	RAMPAGE_only	6	8	10	0.462636	2.921928	chr21	8817416	8819072	LINE|L1|L1PB	-	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr5	128082251	128082276	128082275	-	High_confidence	10	12	42	1.943072	4.704994	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	128024026	128082960	LINC01184|ENST00000508878.5	-	128024026,128061143,128076946,128081972,128082734	128024298,128061244,128077093,128082194,128082960	0.714286
gastroesophageal_sphincter_female_adult_51_years	chr15	65642912	65642951	65642916	+	High_confidence	6	6	26	1.202854	4.483856	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	0.961538
gastroesophageal_sphincter_female_adult_51_years	chr16	86490493	86490494	86490493	-	High_confidence	4	4	7	0.323845	2.807355	chr16	86490288	86490466	LTR|ERVL-MaLR|MLT1F1	-	chr16	86487705	86490879	FENDRR|ENST00000598996.2	-	86487705,86490852	86490513,86490879	0.571429
gastroesophageal_sphincter_female_adult_51_years	chr8	97719182	97719183	97719182	+	RAMPAGE_only	10	10	10	0.462636	3.121928	chr8	97719213	97719522	SINE|Alu|AluSx1	+	chr8	97644545	97725243	MTDH|ENST00000519934.5	+	97644545,97661071,97686667,97687428,97689037,97690951,97706625,97713661,97719048,97722878,97724599	97644887,97661173,97686752,97687605,97689103,97691188,97706750,97713769,97719189,97723035,97725243	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr1	155058772	155058784	155058772	+	High_confidence	11	11	19	0.879009	3.531631	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.894737
gastroesophageal_sphincter_female_adult_51_years	chr1	100268247	100268281	100268280	+	RAMPAGE_only	15	15	27	1.249118	3.852498	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr16	63618045	63618046	63618045	-	High_confidence	21	26	27	1.249118	4.469670	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.629630
gastroesophageal_sphincter_female_adult_51_years	chr21	46256892	46256897	46256892	-	High_confidence	4	6	10	0.462636	2.725481	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.700000
gastroesophageal_sphincter_female_adult_51_years	chr12	22749949	22749950	22749949	-	High_confidence	11	11	13	0.601427	3.084963	chr12	22749738	22749979	DNA|hAT-Charlie|MER1A	-	chr12	22740053	22750248	STRG.84573.2	-	22740053	22750248	0.923077
gastroesophageal_sphincter_female_adult_51_years	chr1	161206432	161206443	161206432	+	High_confidence	2	2	6	0.277582	2.584963	chr1	161206361	161206444	SINE|tRNA|LFSINE_Vert	+	chr1	161206408	161214296	STRG.6729.2	+	161206408,161209192,161209482,161209856,161210110,161210303,161210590,161212350,161213379,161213648,161213863,161214155	161206597,161209313,161209595,161209931,161210188,161210389,161210710,161212480,161213475,161213732,161213921,161214296	0.833333
gastroesophageal_sphincter_female_adult_51_years	chr10	17617790	17617820	17617796	-	High_confidence	4	5	13	0.601427	3.251629	chr10	17617759	17617913	SINE|Alu|FRAM	-	chr10	17589031	17617377	HACD1|ENST00000361271.7	-	17589031,17594204,17599289,17603559,17603725,17603929,17617082	17590446,17594383,17599411,17603648,17603744,17604047,17617377	0.923077
gastroesophageal_sphincter_female_adult_51_years	chr3	54889136	54889158	54889136	+	RAMPAGE_only	7	10	20	0.925272	3.787144	chr3	54888995	54889708	LINE|L2|L2b	-	chr3	54846204	55074542	STRG.23958.1	+	54846204,54871538,54879017,54879349,54880795,54885280,54885488,54887958,54891354,54896748,54899787,54968449,54969799,54984607,54987682,55004762,55007789,55009387,55018205,55073444,55073776,55074113	54846467,54871622,54879089,54879411,54880863,54885326,54885586,54888052,54891450,54896870,54899868,54968511,54969844,54984670,54987753,55004838,55007842,55009443,55018317,55073557,55073859,55074542	0.600000
gastroesophageal_sphincter_female_adult_51_years	chr6	28354137	28354200	28354137	-	High_confidence	16	16	58	2.683290	5.152980	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329373	28354186	ZSCAN31|ENST00000446222.5	-	28329373,28336789,28353861,28354130	28329778,28336943,28353952,28354186	0.689655
gastroesophageal_sphincter_female_adult_51_years	chr9	92536649	92536704	92536703	-	High_confidence	12	13	50	2.313181	5.094102	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.940000
gastroesophageal_sphincter_female_adult_51_years	chr2	48529375	48529386	48529385	+	High_confidence	13	13	24	1.110327	3.772055	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	0.708333
gastroesophageal_sphincter_female_adult_51_years	chrX	115647972	115647997	115647979	+	RAMPAGE_only	3	3	16	0.740218	3.272906	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.937500
gastroesophageal_sphincter_female_adult_51_years	chr11	122322326	122322392	122322389	-	RAMPAGE_only	7	7	33	1.526699	4.040775	chr11	122322142	122322989	LINE|L2|L2c	+	chr11	122089195	122309451	MIR100HG|ENST00000648734.1	-	122089195,122155550,122180335,122202763,122292283,122309249	122091719,122155632,122180398,122202909,122292403,122309451	0.515152
gastroesophageal_sphincter_female_adult_51_years	chr1	147172956	147172977	147172975	+	High_confidence	7	14	27	1.249118	4.403856	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.925926
gastroesophageal_sphincter_female_adult_51_years	chr8	124673341	124673352	124673346	-	High_confidence	3	3	11	0.508900	3.095795	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.818182
gastroesophageal_sphincter_female_adult_51_years	chr11	65440230	65440387	65440386	+	RAMPAGE_only	47	50	364	16.839957	6.315807	chr11	65440323	65440484	SINE|Alu|AluJo	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.994505
gastroesophageal_sphincter_female_adult_51_years	chr11	65430580	65430776	65430775	+	RAMPAGE_only	374	381	816	37.751113	5.622119	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr1	155478110	155478112	155478110	-	RAMPAGE_only	4	7	8	0.370109	2.807355	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.625000
gastroesophageal_sphincter_female_adult_51_years	chr15	65244454	65244455	65244454	-	RAMPAGE_only	19	19	23	1.064063	4.106603	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.869565
gastroesophageal_sphincter_female_adult_51_years	chr14	73567613	73567641	73567616	+	High_confidence	37	37	107	4.950207	5.410833	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.953271
gastroesophageal_sphincter_female_adult_51_years	chr3	134485387	134485467	134485443	-	High_confidence	8	8	55	2.544499	4.687931	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.927273
gastroesophageal_sphincter_female_adult_51_years	chrX	74199921	74199946	74199945	-	RAMPAGE_only	7	9	13	0.601427	3.026987	chrX	74199941	74200428	LINE|L1|L1MC2	+	chrX	74195941	74292075	STRG.123557.1	-	74195941,74274341,74280393,74280930,74281701,74291757	74203909,74274410,74280494,74281085,74281848,74292075	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr17	8448658	8448673	8448672	+	High_confidence	3	3	8	0.370109	2.807355	chr17	8448710	8448938	DNA|TcMar-Tigger|MER8	+	chr17	8448603	8461384	NDEL1|ENST00000582277.5	+	8448603,8450779,8454795,8460008,8461136	8448686,8450953,8454887,8460160,8461384	0.750000
gastroesophageal_sphincter_female_adult_51_years	chr3	14047155	14047156	14047155	-	High_confidence	21	21	28	1.295381	4.088221	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14040900	14047164	STRG.22096.1	-	14040900,14046812	14041628,14047164	0.785714
gastroesophageal_sphincter_female_adult_51_years	chr20	17573071	17573092	17573071	+	RAMPAGE_only	36	36	73	3.377244	4.929331	chr20	17572958	17573157	LTR|ERV1|MER92D	-	chr20	17570089	17608242	STRG.115441.3	+	17570089,17600737,17604554,17607036,17607776	17570211,17601045,17604631,17607647,17608242	0.986301
gastroesophageal_sphincter_female_adult_51_years	chr19	48868595	48868617	48868595	-	High_confidence	441	459	1886	87.253184	7.687277	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837182	48868604	STRG.114118.2	-	48837182,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868604	0.999470
gastroesophageal_sphincter_female_adult_51_years	chr4	158173024	158173025	158173024	-	High_confidence	194	201	238	11.010741	6.367990	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.928571
gastroesophageal_sphincter_female_adult_51_years	chr6	36488545	36488608	36488596	+	RAMPAGE_only	7	7	23	1.064063	2.785555	chr6	36488528	36488714	DNA|TcMar-Tigger|Tigger4a	-	chr6	36443035	36490377	STRG.47638.1	+	36443035,36465600,36470051,36474788,36479120,36479590,36481561,36484713,36486882	36443111,36465698,36470257,36475062,36479223,36479711,36481759,36484824,36490377	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr16	11774341	11774342	11774341	-	High_confidence	14	14	18	0.832745	3.454822	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	0.944444
gastroesophageal_sphincter_female_adult_51_years	chr3	14047196	14047216	14047205	-	High_confidence	23	24	42	1.943072	4.850534	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14040900	14047164	STRG.22096.1	-	14040900,14046812	14041628,14047164	0.809524
gastroesophageal_sphincter_female_adult_51_years	chr19	45450739	45450766	45450739	-	High_confidence	5	5	19	0.879009	3.947703	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.736842
gastroesophageal_sphincter_female_adult_51_years	chr1	212792444	212792473	212792472	-	High_confidence	8	9	27	1.249118	4.356558	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.851852
gastroesophageal_sphincter_female_adult_51_years	chr22	23705502	23705514	23705513	-	RAMPAGE_only	4	6	10	0.462636	3.169925	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr5	149429142	149429368	149429367	+	RAMPAGE_only	9	9	105	4.857680	5.284198	chr5	149429309	149429604	SINE|Alu|AluSx	-	chr5	149406963	149432835	STRG.44471.7	+	149406963,149421480,149424089,149427079	149407078,149421601,149424397,149432835	0.990476
gastroesophageal_sphincter_female_adult_51_years	chr12	91179456	91179463	91179462	-	High_confidence	46570	48030	68568	3172.203782	7.234770	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.936895
gastroesophageal_sphincter_female_adult_51_years	chr10	95493172	95493259	95493212	-	RAMPAGE_only	6	6	49	2.266917	4.874615	chr10	95493013	95493319	SINE|Alu|AluSg	+	chr10	95414743	95482671	SORBS1|ENST00000492542.1	-	95414743,95421960,95432447,95437489,95441125,95482433	95414862,95422073,95432576,95437555,95441180,95482671	0.673469
gastroesophageal_sphincter_female_adult_51_years	chr19	9140393	9140428	9140393	+	High_confidence	29	29	72	3.330981	4.855333	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.777778
gastroesophageal_sphincter_female_adult_51_years	chr9	20658568	20658607	20658568	+	High_confidence	9	9	24	1.110327	3.061482	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.750000
gastroesophageal_sphincter_female_adult_51_years	chr9	128261459	128261487	128261459	-	High_confidence	2	2	8	0.370109	2.807355	chr9	128261376	128261424	SINE|MIR|MIR3	-	chr9	128260125	128260991	GOLGA2|ENST00000486411.1	-	128260125,128260464	128260189,128260991	0.625000
gastroesophageal_sphincter_female_adult_51_years	chr22	37855642	37855643	37855642	+	RAMPAGE_only	8	8	8	0.370109	2.500000	chr22	37855622	37855711	SINE|tRNA|LFSINE_Vert	+	chr22	37849480	37888630	EIF3L|ENST00000406934.5	+	37849480,37851279,37858678,37862968,37863271,37870175,37874369,37875840,37877673,37886764,37888425	37850063,37851490,37858740,37863038,37863345,37870347,37874524,37876011,37878171,37886845,37888630	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr15	81209988	81209989	81209988	+	RAMPAGE_only	5	5	8	0.370109	2.521641	chr15	81209880	81211048	LINE|L1|L1P4a	-	chr15	81196878	81314058	IL16|ENST00000394660.6	+	81196878,81225298,81259771,81265658,81269537,81273089,81278816,81279557,81282638,81285697,81290452,81292555,81296927,81299379,81301343,81303548,81305907,81306422,81308604	81197137,81225711,81259880,81265801,81269648,81273204,81278890,81279774,81282756,81285830,81290540,81293037,81297078,81300475,81301512,81303650,81306166,81306545,81314058	0.750000
gastroesophageal_sphincter_female_adult_51_years	chr10	80176109	80176145	80176123	-	RAMPAGE_only	2	2	10	0.462636	2.725481	chr10	80176083	80176485	LINE|L1|L1ME4b	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	0.700000
gastroesophageal_sphincter_female_adult_51_years	chr14	38948236	38948246	38948245	-	High_confidence	6	6	15	0.693954	3.640224	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr11	11963601	11963857	11963664	-	RAMPAGE_only	30	30	257	11.889750	5.562490	chr11	11963645	11963694	DNA|hAT-Ac|OldhAT1	-	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.972763
gastroesophageal_sphincter_female_adult_51_years	chr18	75280671	75280682	75280671	+	RAMPAGE_only	2	2	7	0.323845	2.521641	chr18	75280540	75280747	SINE|MIR|MIRb	+	chr18	75282863	75289943	TSHZ1|ENST00000584217.1	+	75282863	75289943	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr2	217937115	217937162	217937115	-	High_confidence	22	23	92	4.256253	5.330923	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.630435
gastroesophageal_sphincter_female_adult_51_years	chr11	62600241	62600251	62600241	-	High_confidence	3	3	9	0.416373	2.750000	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.777778
gastroesophageal_sphincter_female_adult_51_years	chr14	68947559	68947560	68947559	-	High_confidence	5	5	7	0.323845	2.584963	chr14	68947337	68947577	SINE|MIR|MIRb	-	chr14	68910019	68947548	ACTN1|ENST00000553779.5	-	68910019,68912155,68921005,68925557,68947363	68910042,68912242,68921125,68925672,68947548	0.714286
gastroesophageal_sphincter_female_adult_51_years	chr10	95437800	95437816	95437815	-	RAMPAGE_only	30	32	69	3.192190	4.997673	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.869565
gastroesophageal_sphincter_female_adult_51_years	chr12	10710653	10710654	10710653	-	High_confidence	28	28	28	1.295381	3.379706	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.892857
gastroesophageal_sphincter_female_adult_51_years	chr2	9422934	9422981	9422980	-	High_confidence	3	3	8	0.370109	2.500000	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9403474	9423229	ITGB1BP1|ENST00000360635.7	-	9403474,9407448,9408112,9412268,9414177,9418625,9419989,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9420100,9423229	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr10	28335028	28335053	28335052	-	RAMPAGE_only	3	3	8	0.370109	2.750000	chr10	28334857	28335233	LTR|ERVL-MaLR|MLT1F	-	chr10	28050992	28303066	MPP7|NR_134517.1	-	28050992,28056479,28058494,28059515,28069771,28089670,28119650,28120193,28120593,28124030,28125009,28131559,28147482,28149981,28202152,28238567,28302860	28054244,28056623,28058603,28059743,28069852,28089841,28119715,28120390,28120668,28124116,28125091,28131691,28147563,28150059,28202271,28238735,28303066	0.625000
gastroesophageal_sphincter_female_adult_51_years	chr11	61588377	61588395	61588377	-	RAMPAGE_only	3	3	8	0.370109	2.521641	chr11	61588272	61588409	SINE|MIR|MIRb	-	chr11	61515312	61581148	SYT7|ENST00000263846.8	-	61515312,61523074,61523826,61524362,61527914,61532988,61551383,61556103,61580789	61518731,61523274,61523941,61524532,61528185,61533124,61551463,61556207,61581148	0.625000
gastroesophageal_sphincter_female_adult_51_years	chr8	144106364	144106451	144106364	+	RAMPAGE_only	10	10	41	1.896808	4.189354	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144104511	144107611	MAF1|ENST00000534585.5	+	144104511,144105639,144105868,144106075,144106342,144106834,144107087	144104858,144105766,144105997,144106241,144106674,144106963,144107611	0.951220
gastroesophageal_sphincter_female_adult_51_years	chr6	107872835	107872865	107872864	-	RAMPAGE_only	9	11	32	1.480436	4.324849	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.937500
gastroesophageal_sphincter_female_adult_51_years	chr13	30429287	30429289	30429288	-	RAMPAGE_only	9	16	16	0.740218	3.773557	chr13	30428989	30429302	SINE|Alu|AluSq2	+	chr13	30202629	30307487	KATNAL1|NM_032116.4	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30307330	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307487	0.750000
gastroesophageal_sphincter_female_adult_51_years	chr6	79631273	79631329	79631302	+	High_confidence	62	62	211	9.761623	6.227949	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.990521
gastroesophageal_sphincter_female_adult_51_years	chr16	53445773	53445783	53445782	+	High_confidence	4	7	10	0.462636	2.721928	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr1	52911575	52911590	52911589	-	RAMPAGE_only	3	3	8	0.370109	2.521641	chr1	52911549	52911601	LINE|RTE-BovB|MamRTE1	+	chr1	52896238	52905172	ECHDC2|ENST00000498544.5	-	52896238,52897436,52899173,52904645	52896597,52897484,52899224,52905172	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr20	50131130	50131162	50131139	-	High_confidence	117	120	321	14.850621	6.383092	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.981308
gastroesophageal_sphincter_female_adult_51_years	chrX	155612322	155612346	155612322	+	High_confidence	3	3	11	0.508900	2.921928	chrX	155612307	155612443	SINE|MIR|MIR3	-	chrX	155612564	155782459	SPRY3|NM_001304990.1	+	155612564,155767961,155773765	155612647,155768136,155782459	0.545455
gastroesophageal_sphincter_female_adult_51_years	chr5	109383420	109383490	109383433	-	High_confidence	7	13	54	2.498235	4.942400	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.981481
gastroesophageal_sphincter_female_adult_51_years	chr15	63056189	63056216	63056189	+	High_confidence	12	17	31	1.434172	3.617492	chr15	63056193	63056336	SINE|MIR|MIR1_Amn	+	chr15	63055728	63071912	TPM1|ENST00000558264.5	+	63055728,63059562,63060868,63061197,63061712,63062214,63062575,63071089	63057118,63059680,63060939,63061273,63061788,63062277,63062645,63071912	0.903226
gastroesophageal_sphincter_female_adult_51_years	chr19	49086520	49086547	49086546	+	High_confidence	14	14	45	2.081863	4.747191	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.866667
gastroesophageal_sphincter_female_adult_51_years	chr4	79086147	79086148	79086147	+	High_confidence	8	8	10	0.462636	3.169925	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.600000
gastroesophageal_sphincter_female_adult_51_years	chr4	79258867	79258870	79258869	+	High_confidence	19	25	29	1.341645	4.253434	chr4	79257987	79259677	LTR|ERV1|MER52A	+	chr4	79258780	79308654	LINC01088|ENST00000511241.5	+	79258780,79306690,79308272	79259039,79306728,79308654	0.965517
gastroesophageal_sphincter_female_adult_51_years	chr2	217903767	217903800	217903767	-	High_confidence	4	4	9	0.416373	2.947703	chr2	217903613	217903790	LINE|CR1|L3b	-	chr2	217859228	217903813	TNS1|ENST00000310858.10	-	217859228,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217903602	217859701,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217903813	0.555556
gastroesophageal_sphincter_female_adult_51_years	chr12	110000083	110000085	110000084	-	RAMPAGE_only	3	5	7	0.323845	2.807355	chr12	110000006	110000153	SINE|MIR|MIR	-	chr12	109929801	109996389	GIT2|NM_001135213.1	-	109929801,109934021,109938379,109939164,109947255,109953091,109959846,109961277,109961612,109965525,109967313,109967457,109980951,109983372,109983607,109988962,109989689,109991626,109996172	109933190,109934085,109938568,109939247,109947504,109953234,109959958,109961375,109961685,109965577,109967319,109967503,109981046,109983503,109983694,109989068,109989802,109991760,109996389	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr1	203797150	203797188	203797179	+	High_confidence	2	2	10	0.462636	2.947703	chr1	203797152	203797273	SINE|MIR|MIR3	+	chr1	203797522	203800462	ZBED6|NM_001174108.1	+	203797522	203800462	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr7	158863386	158863409	158863388	+	RAMPAGE_only	7	13	28	1.295381	4.504706	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.750000
gastroesophageal_sphincter_female_adult_51_years	chr11	77175226	77175260	77175226	+	High_confidence	19	19	39	1.804281	4.357838	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175258	77190852	STRG.80223.1	+	77175258,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190852	0.923077
gastroesophageal_sphincter_female_adult_51_years	chr5	150118767	150118849	150118767	-	RAMPAGE_only	7	8	50	2.313181	4.943465	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr12	45292825	45292847	45292825	+	High_confidence	5	5	16	0.740218	3.456565	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr10	73536367	73536388	73536387	-	RAMPAGE_only	3	4	9	0.416373	3.000000	chr10	73536351	73536426	LINE|L1|L1PBa	+	chr10	73497537	73534770	USP54|ENST00000466048.6	-	73497537,73500654,73504849,73505307,73516374,73520907,73523582,73526646,73529679,73530142,73534599	73499188,73500838,73504990,73505426,73517747,73521027,73523750,73526780,73529911,73530523,73534770	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr3	9986881	9986899	9986887	+	High_confidence	5	5	16	0.740218	3.750000	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.687500
gastroesophageal_sphincter_female_adult_51_years	chr3	33838290	33838325	33838290	+	RAMPAGE_only	6	6	30	1.387909	4.256565	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.933333
gastroesophageal_sphincter_female_adult_51_years	chr9	6251184	6251233	6251232	+	RAMPAGE_only	6	6	20	0.925272	3.384184	chr9	6251008	6251757	DNA|hAT-Charlie|Charlie17b	+	chr9	6241694	6257982	IL33|ENST00000456383.3	+	6241694,6250473,6251139,6253551,6254461,6255967	6241785,6250599,6251265,6253602,6254553,6257982	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr11	10690279	10690291	10690279	-	RAMPAGE_only	5	6	14	0.647691	3.664498	chr11	10690108	10690385	SINE|Alu|AluSz6	+	chr11	10576323	10693514	STRG.77585.1	-	10576323,10580454,10581866,10591547,10593491,10594145,10600917,10603119,10604404,10606741,10609727,10623777,10625965,10627715,10627972,10628750,10629537,10631990,10633967,10652024,10690264,10693461	10576575,10580589,10581986,10591612,10593599,10594195,10601059,10603251,10604545,10606772,10609851,10623856,10626583,10627760,10628025,10628828,10629711,10632061,10634071,10652182,10690369,10693514	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr11	87219499	87219506	87219505	+	RAMPAGE_only	4	4	8	0.370109	2.521641	chr11	87219487	87219730	LTR|ERVL-MaLR|MLT1B	-	chr11	87038006	87322350	TMEM135|ENST00000305494.5	+	87038006,87067693,87071522,87091361,87157340,87236637,87295781,87302295,87305935,87309504,87313424,87314470,87318136,87319309,87321200	87038186,87067821,87071615,87091395,87157406,87236684,87295823,87302442,87306005,87309672,87313488,87314547,87318235,87319377,87322350	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr1	161518891	161518892	161518891	+	RAMPAGE_only	15	15	15	0.693954	3.640224	chr1	161518618	161518922	SINE|Alu|AluSz6	-	chr1	161505429	161519568	FCGR2A|ENST00000271450.10	+	161505429,161505986,161506333,161509819,161510833,161513894,161517974	161505552,161506007,161506591,161510074,161510956,161513932,161519568	0.933333
gastroesophageal_sphincter_female_adult_51_years	chr9	84368717	84368756	84368755	-	High_confidence	4	4	9	0.416373	2.947703	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.555556
gastroesophageal_sphincter_female_adult_51_years	chr9	39809803	39809859	39809858	-	High_confidence	7	10	28	1.295381	3.767183	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803262	39810013	STRG.67946.2	-	39803262,39809485,39809730	39803859,39809615,39810013	0.785714
gastroesophageal_sphincter_female_adult_51_years	chrX	150777459	150777460	150777459	-	RAMPAGE_only	4	4	7	0.323845	2.584963	chrX	150776742	150777409	LTR|ERV1|MER4A	-	chrX	150768976	150814864	CD99L2|ENST00000634795.1	-	150768976,150770303,150771804,150776173,150777443,150793690,150795205,150795417,150814861	150769101,150770369,150771822,150776293,150777482,150793756,150795289,150795486,150814864	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr9	127451107	127451108	127451107	-	High_confidence	9	9	11	0.508900	3.121928	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.727273
gastroesophageal_sphincter_female_adult_51_years	chr17	40648578	40648644	40648578	-	High_confidence	7	7	47	2.174390	4.416633	chr17	40648546	40648925	LINE|L2|L2b	+	chr17	40625002	40648654	SMARCE1|ENST00000643318.1	-	40625002,40630713,40631591,40632194,40635930,40636394,40637491,40645795,40647772	40628993,40630924,40631693,40632367,40636102,40636526,40637572,40645847,40648654	0.978723
gastroesophageal_sphincter_female_adult_51_years	chr17	75742693	75742754	75742753	+	RAMPAGE_only	4	4	18	0.832745	2.969389	chr17	75742779	75742995	SINE|MIR|MIRb	+	chr17	75724695	75757818	ITGB4|NM_001005619.1	+	75724695,75727194,75727403,75727650,75728376,75729264,75730240,75730874,75731245,75731811,75732162,75733489,75736050,75736287,75736564,75737321,75737537,75739671,75739879,75740357,75740792,75740981,75742340,75742581,75743712,75748840,75750110,75750679,75750973,75752173,75752445,75754575,75755054,75755700,75756428,75756703,75756942,75757199,75757415	75724782,75727277,75727505,75727855,75728473,75729436,75730504,75730964,75731368,75731973,75732239,75733692,75736154,75736386,75736694,75737444,75737644,75739705,75740071,75740461,75740851,75741005,75742489,75742761,75743861,75749045,75750268,75750860,75751111,75752356,75752577,75754815,75755213,75755850,75756617,75756859,75757107,75757310,75757818	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr12	53464815	53464834	53464815	+	RAMPAGE_only	10	10	23	1.064063	4.004886	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.782609
gastroesophageal_sphincter_female_adult_51_years	chr4	119217537	119217577	119217576	+	RAMPAGE_only	2	2	7	0.323845	2.807355	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212742	119294746	STRG.35398.2	+	119212742,119214069,119217549,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119212873,119214222,119217673,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119294746	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr16	87950453	87950478	87950453	+	High_confidence	4	4	11	0.508900	3.321928	chr16	87950440	87950735	SINE|Alu|AluSx1	-	chr16	87950435	87981049	BANP|ENST00000423252.5	+	87950435,87975047,87981035	87950927,87975185,87981049	0.727273
gastroesophageal_sphincter_female_adult_51_years	chrX	5726324	5726325	5726324	-	High_confidence	67	71	93	4.302517	5.069885	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.860215
gastroesophageal_sphincter_female_adult_51_years	chr12	46266488	46266495	46266488	-	High_confidence	9	10	25	1.156590	3.543465	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.920000
gastroesophageal_sphincter_female_adult_51_years	chr14	50756790	50756929	50756790	-	RAMPAGE_only	8	8	73	3.377244	5.041215	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.958904
gastroesophageal_sphincter_female_adult_51_years	chr1	242001573	242001589	242001588	-	High_confidence	7	8	24	1.110327	3.516028	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	242001586	STRG.10498.1	-	241995489,241998513,241998775,241998950,242001308	241996385,241998620,241998831,241999026,242001586	0.916667
gastroesophageal_sphincter_female_adult_51_years	chr1	28617958	28617998	28617958	-	RAMPAGE_only	3	3	16	0.740218	3.240224	chr1	28617880	28617910	SINE|MIR|MIR	-	chr1	28603100	28643005	TAF12|ENST00000263974.4	-	28603100,28605371,28613246,28617952,28621913,28642654	28603574,28605460,28613361,28618030,28622165,28643005	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr7	11193340	11193369	11193340	+	High_confidence	5	5	21	0.971536	3.721612	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr17	77127872	77127877	77127872	+	High_confidence	9	9	15	0.693954	3.323231	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.866667
gastroesophageal_sphincter_female_adult_51_years	chr5	149430203	149430410	149430332	+	RAMPAGE_only	21	36	173	8.003606	5.544417	chr5	149430274	149430385	SINE|MIR|MIRb	-	chr5	149406963	149432835	STRG.44471.7	+	149406963,149421480,149424089,149427079	149407078,149421601,149424397,149432835	0.994220
gastroesophageal_sphincter_female_adult_51_years	chr6	127330818	127330870	127330818	-	High_confidence	2	2	11	0.508900	3.277613	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.909091
gastroesophageal_sphincter_female_adult_51_years	chr7	101217578	101217595	101217578	-	High_confidence	4	4	17	0.786482	3.572469	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr3	29280838	29280882	29280876	-	High_confidence	5	5	31	1.434172	4.281728	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.516129
gastroesophageal_sphincter_female_adult_51_years	chr17	63691838	63691850	63691838	+	RAMPAGE_only	3	4	8	0.370109	2.750000	chr17	63691879	63692027	SINE|MIR|MIRc	+	chr17	63622709	63693874	MAP3K3|ENST00000577395.5	+	63622709,63632680,63646033,63652556,63657793,63666939,63681765,63685516,63688526,63688788,63689543,63690263,63691101,63691732,63692241,63693548	63622763,63632802,63646074,63652656,63657907,63667060,63681899,63685578,63688594,63688881,63689735,63690412,63691233,63691862,63692419,63693874	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr3	146152393	146152419	146152418	-	RAMPAGE_only	7	9	25	1.156590	4.023465	chr3	146152136	146152431	SINE|Alu|AluSx	+	chr3	146110299	146160991	PLOD2|ENST00000480704.1	-	146110299,146121111,146123264,146124137,146160880	146110448,146121248,146123325,146124229,146160991	0.880000
gastroesophageal_sphincter_female_adult_51_years	chr3	135965673	135965749	135965723	+	High_confidence	62	74	470	21.743901	6.614090	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr14	39064912	39064971	39064912	-	RAMPAGE_only	5	5	28	1.295381	4.004344	chr14	39064766	39064897	SINE|Alu|FLAM_C	-	chr14	39031918	39088723	SEC23A|ENST00000537403.5	-	39031918,39039030,39040731,39042785,39045162,39048651,39055142,39061764,39063323,39064912,39067172,39074414,39075934,39085761,39086928,39087523	39033328,39039096,39040887,39042872,39045324,39048729,39055296,39061871,39063413,39064993,39067296,39074530,39076093,39085906,39087008,39088723	0.928571
gastroesophageal_sphincter_female_adult_51_years	chr14	89183946	89183947	89183946	-	RAMPAGE_only	9	9	9	0.416373	2.641604	chr14	89183817	89183974	SINE|MIR|MIR	+	chr14	89161399	89412476	FOXN3|ENST00000615335.4	-	89161399,89180700,89280949,89350671,89411933	89162969,89180806,89281014,89350808,89412476	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr19	10379666	10379688	10379687	-	High_confidence	3	5	8	0.370109	2.750000	chr19	10379599	10379809	SINE|MIR|MIRb	+	chr19	10368328	10380510	TYK2|ENST00000530829.1	-	10368328,10369756,10378213,10379614,10380379	10368418,10369877,10378426,10379779,10380510	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr1	56645646	56645664	56645650	+	High_confidence	4	4	13	0.601427	3.334679	chr1	56645691	56645853	SINE|MIR|MIR3	+	chr1	56645387	56715334	PRKAA2|ENST00000610361.1	+	56645387,56671440,56674380,56691393,56692357,56693764,56695934,56703970,56706091,56707474	56645474,56671447,56674522,56691487,56692502,56693852,56696159,56704475,56706218,56715334	0.615385
gastroesophageal_sphincter_female_adult_51_years	chr4	4269609	4269614	4269609	-	High_confidence	6	6	15	0.693954	2.842371	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.800000
gastroesophageal_sphincter_female_adult_51_years	chr1	202582622	202582792	202582663	+	RAMPAGE_only	133	141	381	17.626439	5.373792	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.986877
gastroesophageal_sphincter_female_adult_51_years	chr19	46350848	46350850	46350849	+	RAMPAGE_only	5	8	10	0.462636	2.725481	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr7	30568883	30568913	30568912	-	High_confidence	5	5	11	0.508900	3.459432	chr7	30568321	30569340	LTR|ERV1|MER4-int	+	chr7	30561561	30569684	STRG.54861.10	-	30561561,30563722,30568832	30562128,30563893,30569684	0.818182
gastroesophageal_sphincter_female_adult_51_years	chr6	111387823	111387824	111387823	-	RAMPAGE_only	9	9	14	0.647691	3.521641	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111477368	STRG.50877.1	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111364943,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111472012,111474245	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365042,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111472140,111477368	0.928571
gastroesophageal_sphincter_female_adult_51_years	chr10	68911111	68911141	68911140	+	RAMPAGE_only	4	4	13	0.601427	3.251629	chr10	68911147	68911199	LINE|CR1|X6B_LINE	+	chr10	68901288	68946847	DDX50|ENST00000610822.1	+	68901288,68901427,68906710,68906812,68910306,68911067,68913161,68913390,68914058,68919831,68934198,68934798,68936005,68936935,68936967,68936993,68941059,68941096,68941116,68941189,68943211,68946351,68946608	68901426,68901471,68906810,68907007,68910382,68911246,68913279,68913576,68914204,68919981,68934360,68934918,68936079,68936963,68936991,68937095,68941095,68941111,68941188,68941194,68943257,68946606,68946847	0.846154
gastroesophageal_sphincter_female_adult_51_years	chr3	52615426	52615439	52615426	-	High_confidence	23	24	38	1.758017	4.520000	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.947368
gastroesophageal_sphincter_female_adult_51_years	chr7	140641459	140641460	140641459	-	High_confidence	8	8	8	0.370109	2.750000	chr7	140641382	140641679	LINE|L2|L2b	-	chr7	140601924	140641485	DENND2A|ENST00000491728.5	-	140601924,140605704,140641405	140602542,140605806,140641485	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr20	45833293	45833308	45833293	-	High_confidence	14	16	25	1.156590	3.827910	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823378	45833273	STRG.116535.1	-	45823378,45823990,45824291,45824494,45824782,45833250	45823379,45824127,45824406,45824638,45824834,45833273	0.840000
gastroesophageal_sphincter_female_adult_51_years	chr12	9065167	9065174	9065173	+	High_confidence	20	20	49	2.266917	5.109508	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.693878
gastroesophageal_sphincter_female_adult_51_years	chr1	196715609	196715698	196715625	+	RAMPAGE_only	3	3	31	1.434172	4.098069	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.967742
gastroesophageal_sphincter_female_adult_51_years	chr1	238486024	238486037	238486035	-	High_confidence	6	13	22	1.017800	3.921928	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.636364
gastroesophageal_sphincter_female_adult_51_years	chr16	20676201	20676202	20676201	-	High_confidence	5	5	7	0.323845	2.584963	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.714286
gastroesophageal_sphincter_female_adult_51_years	chr7	154928480	154928504	154928503	+	High_confidence	38	38	66	3.053399	5.613205	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.939394
gastroesophageal_sphincter_female_adult_51_years	chr1	89272838	89272883	89272882	-	High_confidence	8	8	42	1.943072	4.753774	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.904762
gastroesophageal_sphincter_female_adult_51_years	chr4	102431244	102431260	102431244	-	High_confidence	4	4	15	0.693954	3.773557	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.800000
gastroesophageal_sphincter_female_adult_51_years	chr20	3795750	3795789	3795750	+	High_confidence	35	38	211	9.761623	6.033114	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.981043
gastroesophageal_sphincter_female_adult_51_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	10	10	10	0.462636	3.321928	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr16	15710472	15710518	15710517	-	High_confidence	11	12	29	1.341645	3.923252	chr16	15710240	15710545	SINE|Alu|AluSc	+	chr16	15703740	15711270	MYH11|ENST00000573908.1	-	15703740,15711112	15704123,15711270	0.896552
gastroesophageal_sphincter_female_adult_51_years	chr19	3062922	3062983	3062982	-	High_confidence	92	98	424	19.615774	6.015308	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.974057
gastroesophageal_sphincter_female_adult_51_years	chr18	34709331	34709374	34709369	+	High_confidence	5	5	21	0.971536	3.932138	chr18	34709150	34709395	LINE|L2|L2c	-	chr18	34710231	34868812	DTNA|NM_001198941.1	+	34710231,34755975,34765960,34794036,34806218,34811958,34815908,34818163,34820790,34827592,34848295,34851830,34858284,34863965,34866110	34710445,34756043,34766041,34794250,34806304,34812113,34816014,34818330,34820915,34827676,34848383,34851928,34858398,34864062,34868812	0.571429
gastroesophageal_sphincter_female_adult_51_years	chr15	30758004	30758014	30758013	+	RAMPAGE_only	4	4	8	0.370109	2.500000	chr15	30757872	30758013	LINE|L2|L2b	+	chr15	30658739	30768126	AC091057.1|ENST00000562954.1	+	30658739,30716219,30750401,30767857	30658844,30716342,30750556,30768126	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr5	31530830	31530854	31530853	-	RAMPAGE_only	4	5	13	0.601427	3.026987	chr5	31530667	31530954	LINE|L2|L2c	+	chr5	31400496	31532061	DROSHA|ENST00000511367.6	-	31400496,31405676,31406852,31409055,31409249,31410745,31421271,31422786,31424426,31429474,31431575,31435764,31437238,31448546,31449280,31451532,31464235,31466181,31467938,31472062,31483553,31484880,31486490,31493206,31495285,31504554,31508620,31511034,31514987,31515453,31521122,31526078,31529039,31530797,31531989	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31422944,31424471,31429545,31431678,31435864,31437298,31448607,31449419,31451640,31464343,31466281,31468063,31472232,31483628,31484962,31486562,31493293,31495372,31504635,31508775,31511176,31515219,31515564,31521215,31526912,31529105,31530924,31532061	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr22	39021125	39021147	39021141	+	High_confidence	3	3	9	0.416373	2.750000	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.888889
gastroesophageal_sphincter_female_adult_51_years	chr19	53865343	53865349	53865343	+	High_confidence	11	11	26	1.202854	3.796218	chr19	53865313	53865624	SINE|Alu|AluSx	-	chr19	53865583	53876435	MYADM|NM_001290193.1	+	53865583,53869753,53873527	53865728,53869838,53876435	0.730769
gastroesophageal_sphincter_female_adult_51_years	chr7	11192786	11192800	11192786	+	High_confidence	4	4	9	0.416373	3.000000	chr7	11192822	11192883	LINE|L1|L1MA1	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr1	202551787	202551851	202551797	+	RAMPAGE_only	7	7	30	1.387909	4.481728	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.700000
gastroesophageal_sphincter_female_adult_51_years	chr12	27579368	27579400	27579368	+	RAMPAGE_only	5	5	14	0.647691	3.039149	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.714286
gastroesophageal_sphincter_female_adult_51_years	chr3	42770599	42770600	42770599	+	High_confidence	8	8	9	0.416373	2.500000	chr3	42769529	42771022	LTR|ERV1|LTR12C	+	chr3	42770611	42773635	LOC729083|NR_122070.1	+	42770611,42773204	42771077,42773635	0.888889
gastroesophageal_sphincter_female_adult_51_years	chr15	74174548	74174572	74174571	+	High_confidence	28	33	119	5.505371	5.022194	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	0.983193
gastroesophageal_sphincter_female_adult_51_years	chr10	95312916	95313321	95313113	-	RAMPAGE_only	86	86	1014	46.911309	6.335913	chr10	95313103	95313210	DNA|hAT-Tip100|UCON132b	+	chr10	95311772	95339327	SORBS1|ENST00000649911.1	-	95311772,95318319,95321962,95339132	95315126,95318432,95322153,95339327	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr9	130268681	130268711	130268681	+	High_confidence	4	4	20	0.925272	3.884184	chr9	130268629	130268697	LINE|L2|L2b	-	chr9	130268516	130431438	STRG.71171.2	+	130268516,130284602,130285157,130286187,130294854,130295665,130296673,130299024,130302856,130303486,130304729,130306128,130306810,130307452,130309911,130319494,130320355,130320775,130321786,130325594,130325810,130327309,130337893,130341110,130342349,130347165,130348544,130348983,130349536,130351422,130352926,130354762,130355745,130356087,130357833,130358389,130359318,130360427,130362007,130362866,130364713,130365630,130365875,130368275,130369569,130370963,130372293,130373037,130374501,130375562,130375875,130376515,130377648,130379248,130382183,130382678,130383503,130384372,130384684,130385559,130386442,130388408,130390976,130391203,130391449,130391934,130393211,130393741,130394384,130395026,130395210,130395923,130396168,130397527,130398550,130399510,130400782,130402788,130403193,130403740,130404868,130405954,130407570,130408742,130410570,130418771,130422576,130424775,130425008,130425686,130427312,130427496,130428357,130429556,130430283,130431366	130268731,130284673,130285316,130286310,130295026,130295772,130296794,130299288,130303001,130303608,130305002,130306270,130306938,130307566,130310061,130319695,130320451,130320903,130321931,130325707,130325970,130327475,130338021,130341365,130342436,130347360,130348675,130349131,130349663,130351577,130353205,130355044,130355854,130356257,130357988,130358486,130359414,130360604,130362165,130362990,130364889,130365727,130365995,130368437,130369851,130371131,130372407,130373124,130374693,130375736,130375989,130376658,130377799,130379467,130382297,130382866,130383600,130384534,130384798,130385762,130386524,130388540,130391120,130391363,130391574,130392118,130393309,130394008,130394575,130395108,130395347,130396065,130396313,130397655,130398707,130399632,130400947,130402896,130403328,130403875,130405059,130406168,130407705,130408933,130410652,130419041,130422726,130424913,130425130,130425924,130427375,130427619,130428489,130429685,130430604,130431438	0.800000
gastroesophageal_sphincter_female_adult_51_years	chr21	44962753	44962791	44962790	+	High_confidence	11	11	54	2.498235	5.081470	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44962708	44978466	STRG.118928.7	+	44962708,44967033,44973196,44976679	44962856,44967181,44973265,44978466	0.981481
gastroesophageal_sphincter_female_adult_51_years	chrX	73824307	73824526	73824501	-	RAMPAGE_only	16	16	159	7.355915	4.546460	chrX	73824472	73824516	LINE|L2|L2b	+	chrX	73823336	73829691	XIST|ENST00000649757.1	-	73823336,73829067	73827984,73829691	0.987421
gastroesophageal_sphincter_female_adult_51_years	chr10	32446977	32446978	32446977	+	High_confidence	8	8	12	0.555163	2.732159	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.916667
gastroesophageal_sphincter_female_adult_51_years	chr17	4736346	4736361	4736360	-	High_confidence	3	4	10	0.462636	2.725481	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr8	30812434	30812454	30812453	-	High_confidence	12	12	42	1.943072	4.945772	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr4	20595826	20595834	20595826	+	RAMPAGE_only	6	6	14	0.647691	3.026987	chr4	20595845	20596093	LINE|L1|L1MA2	+	chr4	20253815	20619183	SLIT2|ENST00000503837.5	+	20253815,20256671,20257867,20268809,20467751,20480715,20486199,20488818,20490802,20491760,20510494,20511065,20519381,20523759,20524013,20528948,20531983,20533571,20539440,20541452,20542493,20546030,20548487,20549056,20550826,20553804,20567261,20567517,20568864,20589643,20595696,20596414,20598264,20610012,20616909,20617438,20618767	20253994,20256743,20257939,20268881,20467823,20480787,20486271,20488982,20490814,20491899,20510566,20511137,20519453,20523903,20524177,20529099,20532058,20533715,20539584,20541619,20542626,20546099,20548559,20549128,20550898,20553968,20567386,20567615,20569004,20589737,20595834,20596655,20598395,20610167,20617198,20617650,20619183	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr4	128570442	128570488	128570487	-	High_confidence	7	7	18	0.832745	3.852169	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.944444
gastroesophageal_sphincter_female_adult_51_years	chr6	11111815	11111841	11111837	-	High_confidence	3	3	10	0.462636	2.947703	chr6	11111706	11112217	LTR|ERV1|MER50	-	chr6	11102488	11111838	ERVFRD-1|NM_207582.2	-	11102488,11111676	11105630,11111838	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr7	5686196	5686218	5686196	-	RAMPAGE_only	2	2	6	0.277582	2.584963	chr7	5685940	5686248	SINE|Alu|AluSx	+	chr7	5622694	5695591	STRG.54092.5	-	5622694,5624055,5641153,5652412,5685913	5623179,5624125,5641376,5652510,5695591	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr3	152267310	152267490	152267410	-	RAMPAGE_only	13	14	182	8.419979	5.608711	chr3	152267213	152267496	LINE|L2|L2c	+	chr3	152262615	152269555	MBNL1-AS1|ENST00000608395.1	-	152262615,152269427	152269072,152269555	0.983516
gastroesophageal_sphincter_female_adult_51_years	chr2	86482561	86482578	86482577	+	RAMPAGE_only	9	11	21	0.971536	4.011365	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.523810
gastroesophageal_sphincter_female_adult_51_years	chr8	116648828	116648903	116648864	-	RAMPAGE_only	11	20	100	4.626362	5.246628	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr7	6590246	6590285	6590246	+	High_confidence	6	7	30	1.387909	4.256565	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.966667
gastroesophageal_sphincter_female_adult_51_years	chr5	151181280	151181656	151181655	-	RAMPAGE_only	45	50	687	31.783106	5.161423	chr5	151181594	151181690	DNA|hAT-Charlie|MER103C	-	chr5	151181051	151224093	CCDC69|NM_015621.2	-	151181051,151184343,151185421,151186022,151187385,151198996,151201581,151205399,151223922	151183614,151184441,151185541,151186124,151187459,151199084,151201688,151205475,151224093	0.992722
gastroesophageal_sphincter_female_adult_51_years	chr19	9700673	9700674	9700673	-	High_confidence	29	31	33	1.526699	2.832440	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.939394
gastroesophageal_sphincter_female_adult_51_years	chr12	118172464	118172506	118172464	-	RAMPAGE_only	2	3	14	0.647691	3.238901	chr12	118172293	118172417	LINE|L2|L2b	-	chr12	118159775	118161879	TAOK3|ENST00000537569.1	-	118159775,118161787	118160358,118161879	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr11	12531645	12531725	12531724	+	RAMPAGE_only	23	25	62	2.868344	3.854380	chr11	12531676	12531786	DNA|TcMar-Tigger|Tigger12A	-	chr11	12377478	12535356	PARVA|ENST00000649199.1	+	12377478,12473744,12473912,12477846,12496457,12504313,12508583,12511513,12513298,12513996,12517609,12518444,12527848	12377783,12473834,12473983,12477949,12496598,12504429,12508642,12511533,12513360,12514065,12517711,12518517,12535356	0.951613
gastroesophageal_sphincter_female_adult_51_years	chr19	20423696	20423704	20423697	-	RAMPAGE_only	14	22	50	2.313181	4.147377	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.760000
gastroesophageal_sphincter_female_adult_51_years	chr6	35672673	35672675	35672673	-	RAMPAGE_only	5	8	11	0.508900	2.721928	chr6	35672643	35672949	SINE|Alu|AluY	+	chr6	35573584	35688915	FKBP5|ENST00000539068.5	-	35573584,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35688731	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35642843,35688915	0.909091
gastroesophageal_sphincter_female_adult_51_years	chr15	58851912	58851958	58851957	+	RAMPAGE_only	12	13	20	0.925272	3.684184	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr1	235454156	235454157	235454156	-	RAMPAGE_only	5	6	8	0.370109	2.521641	chr1	235454005	235454137	SINE|Alu|FLAM_C	-	chr1	235447189	235504481	B3GALNT2|NM_152490.4	-	235447189,235453089,235454155,235455558,235458602,235465635,235470849,235480053,235484321,235489167,235494680,235504140	235450340,235453146,235454315,235455684,235458786,235465714,235470960,235480149,235484515,235489268,235494828,235504481	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr7	26551819	26551839	26551819	+	High_confidence	4	4	9	0.416373	2.947703	chr7	26551639	26551841	SINE|MIR|MIR	-	chr7	26551821	26557200	AC004947.1|ENST00000420912.1	+	26551821,26554808	26552210,26557200	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr1	51403428	51403433	51403428	-	RAMPAGE_only	4	6	10	0.462636	2.503258	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr1	160350217	160350229	160350228	+	High_confidence	8	8	15	0.693954	3.773557	chr1	160350194	160350231	LINE|RTE-BovB|MamRTE1	-	chr1	160350104	160355753	NCSTN|ENST00000424645.6	+	160350104,160351287,160351695,160352053,160352886,160353159,160354117,160355654	160350250,160351372,160351805,160352206,160352991,160353237,160354290,160355753	0.933333
gastroesophageal_sphincter_female_adult_51_years	chr2	182928788	182928798	182928789	-	RAMPAGE_only	7	14	24	1.110327	3.186704	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.791667
gastroesophageal_sphincter_female_adult_51_years	chr5	55982742	55982801	55982789	-	High_confidence	7	7	40	1.850545	4.714513	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.975000
gastroesophageal_sphincter_female_adult_51_years	chrX	120143500	120143501	120143500	+	RAMPAGE_only	15	15	15	0.693954	3.106891	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120036235	120146854	RHOXF1-AS1|ENST00000553843.5	+	120036235,120120851,120138997,120143722,120145637	120036532,120121139,120139119,120143900,120146854	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr8	86417214	86417236	86417235	+	High_confidence	12	12	29	1.341645	4.423252	chr8	86417268	86417372	DNA|hAT-Charlie|MER58D	+	chr8	86417222	86431665	WWP1|ENST00000521079.1	+	86417222,86425222,86427642,86430696,86431405,86431614	86417279,86425318,86427817,86430751,86431490,86431665	0.827586
gastroesophageal_sphincter_female_adult_51_years	chr9	39810033	39810099	39810033	-	High_confidence	14	14	57	2.637026	4.889479	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803262	39810013	STRG.67946.2	-	39803262,39809485,39809730	39803859,39809615,39810013	0.947368
gastroesophageal_sphincter_female_adult_51_years	chr6	31587201	31587202	31587201	+	High_confidence	5	5	8	0.370109	2.807355	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr2	232845816	232845876	232845866	+	RAMPAGE_only	4	4	14	0.647691	3.521641	chr2	232845876	232846546	LINE|CR1|L3	+	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr1	166850123	166850125	166850123	+	RAMPAGE_only	29	32	43	1.989336	4.543943	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.930233
gastroesophageal_sphincter_female_adult_51_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	15	15	16	0.740218	2.789898	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.687500
gastroesophageal_sphincter_female_adult_51_years	chr11	65429849	65430106	65430042	+	RAMPAGE_only	20	20	258	11.936014	5.958781	chr11	65430027	65430148	SINE|MIR|MIRb	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr20	56367400	56367401	56367400	+	RAMPAGE_only	7	7	11	0.508900	3.095795	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr2	171414676	171414677	171414676	-	RAMPAGE_only	9	9	9	0.416373	2.947703	chr2	171414444	171414743	SINE|Alu|AluJb	+	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr4	118769836	118769863	118769862	-	High_confidence	10	10	29	1.341645	3.661933	chr4	118769853	118769919	SINE|MIR|MIRb	+	chr4	118723023	118769840	SEC24D|ENST00000511481.5	-	118723023,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118769763	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118769840	0.931034
gastroesophageal_sphincter_female_adult_51_years	chr19	40608548	40608592	40608591	+	RAMPAGE_only	28	28	42	1.943072	4.880180	chr19	40608638	40608924	SINE|Alu|AluSq2	+	chr19	40610212	40611922	LTBP4|ENST00000598256.1	+	40610212,40611151,40611858	40610657,40611394,40611922	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr1	12572738	12572758	12572738	-	RAMPAGE_only	4	4	12	0.555163	3.095795	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.916667
gastroesophageal_sphincter_female_adult_51_years	chr3	128626800	128626816	128626810	-	RAMPAGE_only	7	7	13	0.601427	3.022055	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.923077
gastroesophageal_sphincter_female_adult_51_years	chrX	48683362	48683363	48683362	+	High_confidence	14	21	21	0.971536	4.037401	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.904762
gastroesophageal_sphincter_female_adult_51_years	chr5	176411458	176411459	176411458	-	RAMPAGE_only	9	9	11	0.508900	2.721928	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.909091
gastroesophageal_sphincter_female_adult_51_years	chr5	150125450	150125570	150125475	-	RAMPAGE_only	6	9	54	2.498235	5.370538	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.944444
gastroesophageal_sphincter_female_adult_51_years	chr2	62724518	62724519	62724518	+	RAMPAGE_only	7	7	7	0.323845	2.807355	chr2	62722846	62724681	LINE|L1|L1PA13	-	chr2	62707191	63045500	EHBP1|ENST00000405289.5	+	62707191,62747394,62764265,62771338,62826086,62831018,62859168,62864730,62874345,62942717,62943801,62948259,62955516,62979187,62987930,62990715,62993529,62993870,62996642,63037534,63038742,63045065,63045409	62707295,62747452,62764361,62771392,62826268,62831158,62859291,62864971,62874532,62942896,62943850,62949162,62955660,62979335,62988038,62990840,62993668,62993977,62996766,63037634,63038816,63045180,63045500	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr9	121281820	121281851	121281844	+	RAMPAGE_only	6	6	19	0.879009	3.794653	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.578947
gastroesophageal_sphincter_female_adult_51_years	chr12	10363964	10363965	10363964	+	High_confidence	6	6	7	0.323845	2.584963	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr5	173316312	173316379	173316312	-	RAMPAGE_only	3	3	30	1.387909	4.086790	chr5	173316136	173316357	DNA|hAT-Charlie|MER58A	+	chr5	173314712	173329503	STC2|ENST00000265087.8	-	173314712,173323218,173325867,173328042	173318249,173323430,173326010,173329503	0.966667
gastroesophageal_sphincter_female_adult_51_years	chr5	95509600	95509627	95509600	-	RAMPAGE_only	6	7	14	0.647691	3.521641	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr6	144533105	144533106	144533105	+	RAMPAGE_only	5	5	8	0.370109	2.807355	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.750000
gastroesophageal_sphincter_female_adult_51_years	chr1	166850222	166850328	166850282	+	RAMPAGE_only	4	4	42	1.943072	4.669352	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr12	12927733	12927734	12927733	+	High_confidence	5	5	7	0.323845	2.521641	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927725	12980307	GPRC5D-AS1|ENST00000545914.5	+	12927725,12978940,12979523,12979999	12927803,12979021,12979622,12980307	0.571429
gastroesophageal_sphincter_female_adult_51_years	chr6	125828161	125828228	125828227	+	RAMPAGE_only	11	12	32	1.480436	4.073391	chr6	125828208	125828418	LINE|L2|L2-3_Crp	-	chr6	125815217	125874968	NCOA7|ENST00000419660.1	+	125815217,125855019,125874888	125815404,125855240,125874968	0.781250
gastroesophageal_sphincter_female_adult_51_years	chr4	2867814	2867851	2867814	+	High_confidence	8	10	29	1.341645	4.566109	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.965517
gastroesophageal_sphincter_female_adult_51_years	chr12	123390743	123390774	123390760	+	High_confidence	7	8	35	1.619227	4.513646	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr1	53368101	53368123	53368122	-	High_confidence	9	9	16	0.740218	3.323231	chr1	53367866	53368194	LINE|L2|L2b	+	chr1	53366667	53368245	AC119428.2|ENST00000449958.1	-	53366667,53368005	53367277,53368245	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr22	50785217	50785238	50785222	+	RAMPAGE_only	4	5	21	0.971536	3.725651	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr18	9117556	9117590	9117556	+	High_confidence	3	3	24	1.110327	4.229871	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9117525	9119566	NDUFV2|ENST00000483511.1	+	9117525,9117837,9119325,9119473	9117638,9117903,9119388,9119566	0.541667
gastroesophageal_sphincter_female_adult_51_years	chr5	151687233	151687245	151687233	-	High_confidence	6	6	21	0.971536	3.884184	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151667473	151687264	STRG.44596.2	-	151667473,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687264	0.809524
gastroesophageal_sphincter_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	573	709	1318	60.975449	5.734974	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.984067
gastroesophageal_sphincter_female_adult_51_years	chr9	122164574	122164596	122164595	+	High_confidence	75	90	166	7.679761	5.979264	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122164614	122174568	MORN5|ENST00000418632.1	+	122164614,122166767,122169644,122174495	122164647,122166915,122169756,122174568	0.554217
gastroesophageal_sphincter_female_adult_51_years	chr17	2975660	2975679	2975660	+	RAMPAGE_only	4	6	16	0.740218	3.625000	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2853933	3037686	STRG.104572.1	+	2853933,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2854102,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037686	0.937500
gastroesophageal_sphincter_female_adult_51_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	10	12	13	0.601427	3.251629	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.692308
gastroesophageal_sphincter_female_adult_51_years	chr2	38515502	38515503	38515502	-	High_confidence	9	9	13	0.601427	3.084963	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.769231
gastroesophageal_sphincter_female_adult_51_years	chr5	78388842	78388874	78388842	+	RAMPAGE_only	2	2	10	0.462636	2.947703	chr5	78388798	78388903	LINE|CR1|L3	-	chr5	78360804	78416588	SCAMP1|ENST00000510030.2	+	78360804,78388836,78415519,78416540	78361056,78388914,78415618,78416588	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr3	188882781	188882952	188882803	+	RAMPAGE_only	77	82	382	17.672702	5.066412	chr3	188882739	188882994	SINE|Alu|AluYc	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.997382
gastroesophageal_sphincter_female_adult_51_years	chr7	40509494	40509498	40509494	+	High_confidence	96	96	214	9.900414	6.352470	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40509444	40860631	STRG.55481.4	+	40509444,40749433,40860315	40509545,40749497,40860631	0.677570
gastroesophageal_sphincter_female_adult_51_years	chr11	64226142	64226180	64226142	-	High_confidence	71	71	387	17.904020	6.889104	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64224202	64226148	TRPT1|ENST00000545812.1	-	64224202,64224284,64224542,64224794,64225498,64225785,64226049	64224210,64224341,64224717,64224970,64225580,64225869,64226148	0.573643
gastroesophageal_sphincter_female_adult_51_years	chr15	90467553	90467580	90467579	+	RAMPAGE_only	3	4	9	0.416373	2.725481	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.777778
gastroesophageal_sphincter_female_adult_51_years	chr5	34244736	34244758	34244740	-	High_confidence	3	3	13	0.601427	2.792481	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.769231
gastroesophageal_sphincter_female_adult_51_years	chr17	67920091	67920114	67920113	+	High_confidence	3	3	14	0.647691	3.182006	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr5	40982389	40982567	40982412	+	RAMPAGE_only	8	12	109	5.042734	4.913893	chr5	40982142	40982442	SINE|Alu|AluSx1	-	chr5	40909496	40982939	C7|NM_000587.2	+	40909496,40928579,40931063,40934324,40936337,40937551,40945197,40947601,40949903,40955386,40958032,40959448,40962084,40964740,40972402,40976749,40979724,40981391	40909616,40928635,40931139,40934466,40936485,40937690,40945368,40947845,40950014,40955553,40958261,40959620,40962172,40964873,40972594,40976840,40979909,40982939	0.963303
gastroesophageal_sphincter_female_adult_51_years	chr16	15838799	15838811	15838799	-	RAMPAGE_only	4	4	9	0.416373	3.000000	chr16	15838577	15838884	SINE|Alu|AluSz	+	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr15	75626304	75626305	75626304	-	High_confidence	12	12	13	0.601427	3.251629	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.846154
gastroesophageal_sphincter_female_adult_51_years	chr20	18794077	18794086	18794077	+	High_confidence	46	46	107	4.950207	4.443189	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.971963
gastroesophageal_sphincter_female_adult_51_years	chr1	39310301	39310421	39310301	+	RAMPAGE_only	6	6	69	3.192190	5.427082	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.971014
gastroesophageal_sphincter_female_adult_51_years	chr20	4800977	4801048	4801047	-	RAMPAGE_only	7	8	29	1.341645	3.909368	chr20	4800953	4801009	DNA|hAT-Ac|OldhAT1	-	chr20	4780022	4795504	RASSF2|ENST00000478553.1	-	4780022,4786230,4787632,4788216,4789595,4790450,4792538,4792993,4795255	4784342,4786328,4787701,4788268,4789697,4790611,4792627,4793054,4795504	0.551724
gastroesophageal_sphincter_female_adult_51_years	chrX	73994921	73994946	73994945	+	RAMPAGE_only	4	4	10	0.462636	2.921928	chrX	73994826	73995038	SINE|Alu|AluSp	-	chrX	73944594	74013092	STRG.123450.4	+	73944594,73994839,73998767,73998953,74004269	73944662,73994961,73998844,74000496,74013092	1.000000
gastroesophageal_sphincter_female_adult_51_years	chrX	129493048	129493058	129493048	-	RAMPAGE_only	3	3	7	0.323845	2.521641	chrX	129492703	129493323	LINE|L1|L1ME4a	+	chrX	129446845	129523405	SMARCA1|ENST00000371121.4	-	129446845,129448332,129465519,129465843,129468772,129471203,129480700,129481074,129487017,129488936,129490059,129491940,129493039,129496749,129497844,129499731,129504733,129506079,129507940,129511803,129515686,129515893,129516330,129518360,129523196	129447233,129448443,129465732,129465962,129468905,129471326,129480814,129481185,129487137,129489085,129490192,129492093,129493075,129496871,129498071,129499841,129504802,129506211,129508096,129511983,129515787,129515994,129516497,129518447,129523405	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr9	33068834	33068931	33068834	-	RAMPAGE_only	7	7	31	1.434172	4.116265	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.935484
gastroesophageal_sphincter_female_adult_51_years	chr20	36911543	36911560	36911559	-	RAMPAGE_only	5	5	11	0.508900	3.321928	chr20	36911497	36911692	SINE|MIR|MIRb	-	chr20	36904021	36927190	SAMHD1|ENST00000644688.1	-	36904021,36905363,36911217,36912460,36916721,36916948,36919363,36927181	36904249,36905503,36911333,36912552,36916830,36917049,36919519,36927190	0.636364
gastroesophageal_sphincter_female_adult_51_years	chr3	57267742	57267773	57267772	+	RAMPAGE_only	14	15	43	1.989336	4.452444	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.837209
gastroesophageal_sphincter_female_adult_51_years	chr2	159428318	159428359	159428356	-	RAMPAGE_only	5	7	29	1.341645	4.532665	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.655172
gastroesophageal_sphincter_female_adult_51_years	chr1	155679929	155679930	155679929	-	High_confidence	11	11	11	0.508900	2.732159	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr1	6223814	6223865	6223864	-	RAMPAGE_only	4	4	24	1.110327	4.004886	chr1	6223652	6223847	SINE|MIR|MIRb	-	chr1	6221192	6235940	ICMT|ENST00000343813.9	-	6221192,6231901,6233473,6234885,6235716	6225262,6232119,6233643,6234974,6235940	0.916667
gastroesophageal_sphincter_female_adult_51_years	chr22	50757125	50757134	50757125	+	High_confidence	2	4	8	0.370109	2.750000	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.875000
gastroesophageal_sphincter_female_adult_51_years	chrX	103607551	103607564	103607563	+	High_confidence	3	3	8	0.370109	2.521641	chrX	103607556	103607707	SINE|MIR|MIRb	+	chrX	103607450	103609927	TCEAL3|ENST00000372628.5	+	103607450,103608603,103609042	103607716,103608673,103609927	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr16	15782760	15782787	15782786	-	High_confidence	38	38	97	4.487571	5.823790	chr16	15782761	15782860	DNA|hAT-Tip100|MER91C	+	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.876289
gastroesophageal_sphincter_female_adult_51_years	chr18	8714136	8714137	8714136	+	RAMPAGE_only	14	14	15	0.693954	3.182006	chr18	8714168	8714357	SINE|MIR|MIRb	+	chr18	8717370	8832777	MTCL1|NM_015210.3	+	8717370,8717903,8718423,8720337,8777832,8783529,8785935,8792997,8796231,8798096,8806892,8812978,8818962,8821466,8824698,8828907,8831606	8717426,8717962,8718648,8720496,8777892,8784843,8786091,8793120,8796462,8798291,8807060,8813233,8819259,8821498,8826232,8828964,8832777	0.933333
gastroesophageal_sphincter_female_adult_51_years	chr6	87210673	87210706	87210673	+	High_confidence	4	5	16	0.740218	3.750000	chr6	87210539	87210803	SINE|Alu|AluY	+	chr6	87210450	87264196	STRG.49721.1	+	87210450,87213901,87214997,87215902,87216298,87218595,87233324,87243474,87245502,87254649	87210807,87214069,87215142,87216057,87216377,87218731,87233527,87243611,87245644,87264196	0.687500
gastroesophageal_sphincter_female_adult_51_years	chr5	133089588	133089678	133089677	+	RAMPAGE_only	16	25	85	3.932408	5.562636	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.988235
gastroesophageal_sphincter_female_adult_51_years	chr4	81154211	81154214	81154213	-	High_confidence	6	12	18	0.832745	3.616875	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.944444
gastroesophageal_sphincter_female_adult_51_years	chr9	113484732	113484733	113484732	+	RAMPAGE_only	16	16	19	0.879009	3.836592	chr9	113484629	113484751	SINE|MIR|MIR	+	chr9	113463731	113542089	RGS3|ENST00000317613.10	+	113463731,113479490,113483058,113484137,113485624,113495785,113497313,113498024,113505441,113506387,113507286,113508540,113514457,113517540,113522929,113529220,113536795,113541319	113463881,113479541,113483117,113484232,113485693,113495846,113497404,113498080,113505523,113506493,113507638,113508580,113514654,113517624,113523041,113529264,113536918,113542089	0.789474
gastroesophageal_sphincter_female_adult_51_years	chr5	54310446	54310484	54310483	-	High_confidence	5	5	10	0.462636	2.641604	chr5	54310446	54310538	DNA|TcMar-Tigger|Tigger15a	+	chr5	53886444	54310415	ARL15|ENST00000510591.6	-	53886444,54113201,54154579,54171783,54310294	53886713,54113410,54154639,54171928,54310415	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr20	51526006	51526031	51526030	-	RAMPAGE_only	6	6	10	0.462636	3.121928	chr20	51525529	51526222	LINE|L2|L2b	+	chr20	51386956	51542719	NFATC2|NM_012340.4	-	51386956,51398642,51432066,51435187,51435705,51454547,51473979,51475457,51516783,51523080,51542369	51391451,51398730,51432756,51435314,51435761,51454688,51474152,51475660,51516955,51524110,51542719	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr14	99897238	99897283	99897282	+	High_confidence	10	10	47	2.174390	4.479234	chr14	99897314	99897417	SINE|Alu|FLAM_A	+	chr14	99897241	99910322	EML1|ENST00000554553.5	+	99897241,99898232,99900928,99907637,99909308,99910241	99897294,99898302,99901039,99907733,99909479,99910322	0.765957
gastroesophageal_sphincter_female_adult_51_years	chr16	10531629	10531766	10531629	-	RAMPAGE_only	8	8	68	3.145926	4.882814	chr16	10531325	10531629	SINE|Alu|AluSx	-	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.985294
gastroesophageal_sphincter_female_adult_51_years	chrX	5726193	5726242	5726193	-	High_confidence	27	27	47	2.174390	4.675311	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.787234
gastroesophageal_sphincter_female_adult_51_years	chrX	124243024	124243030	124243024	+	RAMPAGE_only	2	2	10	0.462636	3.321928	chrX	124242976	124243273	SINE|Alu|AluSz6	-	chrX	124227867	124373197	SH2D1A|ENST00000635645.1	+	124227867,124234572,124246241,124365760,124370175,124371350	124228170,124234671,124246337,124365824,124370320,124373197	0.600000
gastroesophageal_sphincter_female_adult_51_years	chr20	38985964	38985984	38985974	+	RAMPAGE_only	15	15	58	2.683290	5.301694	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.896552
gastroesophageal_sphincter_female_adult_51_years	chr12	46243235	46243294	46243235	-	RAMPAGE_only	11	16	58	2.683290	4.858047	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.913793
gastroesophageal_sphincter_female_adult_51_years	chr16	8842149	8842167	8842153	+	High_confidence	27	28	50	2.313181	4.542683	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.880000
gastroesophageal_sphincter_female_adult_51_years	chr6	116590930	116590931	116590930	+	RAMPAGE_only	10	10	13	0.601427	3.251629	chr6	116590978	116591112	SINE|Alu|FLAM_C	+	chr6	116571488	116593588	RWDD1|ENST00000487832.6	+	116571488,116574057,116580294,116584726,116588841,116590271,116590887,116592979	116571655,116574171,116580360,116584857,116588985,116590404,116590950,116593588	0.923077
gastroesophageal_sphincter_female_adult_51_years	chr8	53523953	53523977	53523963	-	High_confidence	32	34	77	3.562299	5.618525	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.987013
gastroesophageal_sphincter_female_adult_51_years	chr15	42638579	42638591	42638579	+	RAMPAGE_only	3	3	7	0.323845	2.807355	chr15	42638526	42638654	SINE|MIR|MIR3	-	chr15	42629841	42670050	STARD9|ENST00000568493.1	+	42629841,42634855,42637906,42638025,42638699,42651015,42652519,42661157,42662793,42663280,42669157	42630146,42634972,42637939,42638087,42638812,42651085,42652592,42661225,42662891,42663917,42670050	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr3	33838228	33838233	33838228	+	RAMPAGE_only	6	6	15	0.693954	3.521641	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.733333
gastroesophageal_sphincter_female_adult_51_years	chr1	174874418	174874454	174874418	+	High_confidence	6	6	15	0.693954	3.521641	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr1	192529554	192529587	192529586	+	High_confidence	7	7	23	1.064063	4.061482	chr1	192528890	192530203	LINE|L2|L2a	-	chr1	192529578	192538102	AL136987.1|ENST00000457321.1	+	192529578,192530306,192537753	192529715,192530504,192538102	0.521739
gastroesophageal_sphincter_female_adult_51_years	chr14	81427128	81427150	81427149	-	High_confidence	4	4	8	0.370109	2.521641	chr14	81426946	81427161	SINE|MIR|MIR	-	chr14	81260649	81427212	STON2|NM_033104.3	-	81260649,81276900,81370987,81395893,81398294,81427101	81270872,81278739,81371185,81396178,81398580,81427212	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr16	15006394	15006450	15006394	+	RAMPAGE_only	22	22	39	1.804281	3.885442	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.743590
gastroesophageal_sphincter_female_adult_51_years	chr4	79584648	79584659	79584658	+	High_confidence	6	11	20	0.925272	3.521928	chr4	79584547	79584699	SINE|5S-Deu-L2|AmnSINE1	+	chr4	79584734	79586444	STRG.33500.1	+	79584734	79586444	0.950000
gastroesophageal_sphincter_female_adult_51_years	chr11	107441592	107441602	107441601	-	RAMPAGE_only	5	5	12	0.555163	2.845351	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	0.916667
gastroesophageal_sphincter_female_adult_51_years	chr6	127330917	127330952	127330917	-	High_confidence	4	4	21	0.971536	4.106603	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.952381
gastroesophageal_sphincter_female_adult_51_years	chr15	56737905	56737906	56737905	-	RAMPAGE_only	9	13	13	0.601427	3.546594	chr15	56737845	56738254	LTR|ERVL-MaLR|MLT1J2	+	chr15	56630175	56734086	ZNF280D|NM_001288588.1	-	56630175,56635194,56642951,56654197,56654384,56658423,56666394,56666678,56668822,56676669,56677573,56678663,56682253,56689040,56689299,56693097,56700932,56701172,56704120,56707081,56707262,56733457	56632122,56635250,56642997,56654234,56654503,56658486,56666535,56666986,56668957,56676816,56677674,56678821,56682477,56689150,56689470,56693215,56701072,56701238,56704267,56707143,56707306,56734086	0.846154
gastroesophageal_sphincter_female_adult_51_years	chr16	67539738	67539745	67539738	+	High_confidence	3	5	8	0.370109	2.500000	chr16	67539759	67539840	DNA|TcMar-Tigger|Tigger19b	+	chr16	67539864	67541758	RIPOR1|ENST00000569474.5	+	67539864,67540052,67540299,67540457,67541429,67541652	67539899,67540205,67540363,67540704,67541578,67541758	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr11	65181205	65181233	65181222	+	High_confidence	6	6	16	0.740218	3.625000	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr15	34588450	34588453	34588452	-	High_confidence	10	19	20	0.925272	3.681881	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.950000
gastroesophageal_sphincter_female_adult_51_years	chr14	102235416	102235473	102235458	-	High_confidence	8	8	49	2.266917	4.498974	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.959184
gastroesophageal_sphincter_female_adult_51_years	chr14	44912624	44912629	44912628	-	High_confidence	18	18	31	1.434172	4.696132	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44831398	44912617	STRG.94050.1	-	44831398,44899229,44911756,44912452	44831690,44899313,44911860,44912617	0.935484
gastroesophageal_sphincter_female_adult_51_years	chr1	11058808	11058815	11058812	-	RAMPAGE_only	3	3	11	0.508900	2.845351	chr1	11058682	11058785	SINE|MIR|MIRc	-	chr1	11054588	11060024	SRM|ENST00000376957.6	-	11054588,11054961,11055780,11056010,11056603,11058799,11059224,11059776	11054885,11055084,11055926,11056094,11056757,11058892,11059345,11060024	0.909091
gastroesophageal_sphincter_female_adult_51_years	chr3	45034833	45034869	45034840	+	RAMPAGE_only	3	4	15	0.693954	3.664498	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	0.866667
gastroesophageal_sphincter_female_adult_51_years	chr16	20674497	20674498	20674497	+	High_confidence	45	45	48	2.220654	3.975435	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.895833
gastroesophageal_sphincter_female_adult_51_years	chr7	134711499	134711504	134711503	+	RAMPAGE_only	27	28	52	2.405708	5.343898	chr7	134711275	134711628	LTR|ERVL|MLT2D	+	chr7	134744251	134968402	CALD1|ENST00000417172.5	+	134744251,134843883,134867692,134928753,134932987,134941091,134947507,134950373,134958068,134958208,134959973,134960532,134965305,134968339	134744363,134843971,134867804,134928900,134933390,134941237,134947769,134950514,134958112,134958290,134960111,134960628,134965386,134968402	0.653846
gastroesophageal_sphincter_female_adult_51_years	chr6	130894344	130894379	130894363	-	RAMPAGE_only	3	3	10	0.462636	3.169925	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr20	44532558	44532572	44532569	+	High_confidence	52	53	86	3.978671	5.968099	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.895349
gastroesophageal_sphincter_female_adult_51_years	chr9	129698737	129698760	129698737	+	RAMPAGE_only	6	8	19	0.879009	3.721612	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	13	13	13	0.601427	3.334679	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888512	77933384	NEXN|ENST00000401035.7	+	77888512,77916054,77917959,77918124,77925187,77926413,77926715,77929315,77933281	77888759,77916133,77918038,77918273,77925229,77926611,77926892,77929504,77933384	0.769231
gastroesophageal_sphincter_female_adult_51_years	chr2	229232042	229232054	229232053	-	High_confidence	194	203	447	20.679837	7.099457	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.753915
gastroesophageal_sphincter_female_adult_51_years	chr17	15475693	15475733	15475732	-	High_confidence	24	24	43	1.989336	4.207212	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15437858	15475728	CDRT4|ENST00000520956.2	-	15437858,15475600	15438200,15475728	0.790698
gastroesophageal_sphincter_female_adult_51_years	chr6	26474345	26474346	26474345	+	RAMPAGE_only	13	13	18	0.832745	3.461320	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.722222
gastroesophageal_sphincter_female_adult_51_years	chr5	96934454	96934465	96934464	+	High_confidence	10	11	18	0.832745	3.947703	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr6	31400605	31400620	31400605	-	High_confidence	7	7	36	1.665490	4.516876	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31394249	31400423	STRG.47198.1	-	31394249,31398058	31395217,31400423	0.583333
gastroesophageal_sphincter_female_adult_51_years	chr15	32613757	32613784	32613757	+	High_confidence	4	4	14	0.647691	2.807355	chr15	32613534	32613838	SINE|Alu|AluSg7	+	chr15	32613732	32615111	AC123768.2|ENST00000500941.2	+	32613732,32614108,32614739	32613998,32614202,32615111	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	11	11	11	0.508900	3.277613	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr19	1880087	1880088	1880087	-	High_confidence	9	9	12	0.555163	3.277613	chr19	1880079	1880146	DNA|hAT-Ac|OldhAT1	+	chr19	1877203	1880017	ABHD17A|ENST00000592757.1	-	1877203,1877507,1878663,1879920	1877425,1877687,1878904,1880017	0.750000
gastroesophageal_sphincter_female_adult_51_years	chr10	4206719	4207135	4206793	-	RAMPAGE_only	51	52	311	14.387985	6.701191	chr10	4206568	4206861	LINE|L2|L2a	+	chr10	4201140	4243912	LINC00702|ENST00000608792.1	-	4201140,4243503,4243822	4207166,4243687,4243912	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr3	188885882	188885883	188885882	+	RAMPAGE_only	744	780	996	46.078564	5.592420	chr3	188885494	188885956	LINE|L1|L1PA3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.991968
gastroesophageal_sphincter_female_adult_51_years	chr1	235865237	235865256	235865237	-	RAMPAGE_only	3	3	9	0.416373	3.169925	chr1	235864944	235865509	LINE|L2|L2a	+	chr1	235829408	235866876	LYST|ENST00000468626.2	-	235829408,235833577,235866842	235830424,235833667,235866876	0.555556
gastroesophageal_sphincter_female_adult_51_years	chr18	8376185	8376200	8376199	+	RAMPAGE_only	4	4	11	0.508900	3.095795	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8370932	8379313	PTPRM|ENST00000583153.2	+	8370932,8371759,8376045,8376461,8378264,8379166	8371006,8371810,8376200,8376597,8378414,8379313	0.636364
gastroesophageal_sphincter_female_adult_51_years	chr1	159920338	159920347	159920338	-	RAMPAGE_only	9	10	28	1.295381	4.315824	chr1	159920065	159920288	LINE|CR1|L3b	-	chr1	159918106	159923717	TAGLN2|NM_001277224.1	-	159918106,159919273,159919660,159920329,159923435	159918941,159919376,159919835,159920537,159923717	0.928571
gastroesophageal_sphincter_female_adult_51_years	chr1	227142950	227142957	227142956	-	RAMPAGE_only	6	7	14	0.647691	3.700440	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.642857
gastroesophageal_sphincter_female_adult_51_years	chr2	55618850	55618889	55618850	-	High_confidence	4	4	20	0.925272	4.121928	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr1	161518137	161518169	161518168	+	RAMPAGE_only	4	4	9	0.416373	2.947703	chr1	161518213	161518545	LTR|ERV1|MER57F	+	chr1	161514619	161518603	FCGR2A|ENST00000486608.1	+	161514619,161517974	161514874,161518603	0.888889
gastroesophageal_sphincter_female_adult_51_years	chr7	55538661	55538680	55538663	-	High_confidence	4	6	12	0.555163	2.913977	chr7	55538614	55538881	LINE|L1|L1ME4b	+	chr7	55471967	55538660	VOPP1|ENST00000625836.2	-	55471967,55492281,55497612,55521071,55538612	55473045,55492418,55497690,55521130,55538660	0.750000
gastroesophageal_sphincter_female_adult_51_years	chr10	74969716	74969735	74969716	+	RAMPAGE_only	7	7	14	0.647691	3.026987	chr10	74969693	74969726	LINE|L2|L2a	-	chr10	74842619	75022125	KAT6B|ENST00000648369.1	+	74842619,74959969,74969659,74970019,74972506,74975398,74977315,74979223,74981786,74985079,75020581,75021125,75021880	74843478,74960078,74969775,74970101,74972639,74976330,74977437,74979339,74981928,74985241,75020813,75021285,75022125	0.928571
gastroesophageal_sphincter_female_adult_51_years	chr7	80369531	80369569	80369568	+	High_confidence	21	21	68	3.145926	5.318146	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.705882
gastroesophageal_sphincter_female_adult_51_years	chr9	111284874	111284875	111284874	-	High_confidence	53	54	62	2.868344	5.147486	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.951613
gastroesophageal_sphincter_female_adult_51_years	chr1	12409848	12409855	12409854	+	RAMPAGE_only	10	11	23	1.064063	4.243300	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.826087
gastroesophageal_sphincter_female_adult_51_years	chr19	45524098	45524131	45524114	+	RAMPAGE_only	2	4	11	0.508900	3.121928	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.727273
gastroesophageal_sphincter_female_adult_51_years	chr11	46090456	46090480	46090479	-	RAMPAGE_only	6	6	13	0.601427	3.418296	chr11	46090367	46090495	LINE|CR1|L3	+	chr11	45971347	46092205	PHF21A|ENST00000531959.5	-	45971347,45979759,46076753,46079133,46084165,46092182	45971367,45979966,46076840,46079166,46084302,46092205	0.923077
gastroesophageal_sphincter_female_adult_51_years	chr18	36807858	36807888	36807869	-	High_confidence	7	7	20	0.925272	3.787144	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.600000
gastroesophageal_sphincter_female_adult_51_years	chr1	1655480	1655481	1655480	-	RAMPAGE_only	8	8	12	0.555163	2.855389	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.833333
gastroesophageal_sphincter_female_adult_51_years	chr12	7502483	7502537	7502503	-	High_confidence	16	17	58	2.683290	5.135727	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.896552
gastroesophageal_sphincter_female_adult_51_years	chr10	28335269	28335320	28335295	-	High_confidence	204	229	753	34.836505	4.711491	chr10	28335237	28335330	SINE|Alu|AluYc	-	chr10	28125009	28335309	STRG.72473.3	-	28125009,28131559,28147482,28149981,28202152,28238567,28334869	28125091,28131691,28147563,28150059,28202271,28238735,28335309	0.978752
gastroesophageal_sphincter_female_adult_51_years	chr15	62894552	62894573	62894572	+	RAMPAGE_only	6	6	11	0.508900	3.321928	chr15	62894534	62894826	SINE|Alu|AluSx3	+	chr15	62895811	62899543	AC103740.2|ENST00000557900.1	+	62895811,62898650	62896143,62899543	0.909091
gastroesophageal_sphincter_female_adult_51_years	chr5	149420752	149420782	149420781	+	RAMPAGE_only	5	6	17	0.786482	2.822182	chr5	149420813	149420951	SINE|MIR|MIRc	+	chr5	149406878	149428678	CARMN|ENST00000602964.1	+	149406878,149420480	149407078,149428678	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr19	35115822	35115845	35115822	+	High_confidence	9	9	21	0.971536	3.820889	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.904762
gastroesophageal_sphincter_female_adult_51_years	chr15	75879161	75879162	75879161	+	High_confidence	69	69	72	3.330981	4.544290	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75878185	75897062	UBE2Q2|ENST00000563966.1	+	75878185,75879097,75883365,75890434,75890918,75896994	75878360,75879188,75883424,75890483,75891014,75897062	0.513889
gastroesophageal_sphincter_female_adult_51_years	chr15	63061529	63061575	63061574	+	RAMPAGE_only	6	6	21	0.971536	3.932138	chr15	63061546	63061609	SINE|tRNA-Deu|AmnSINE2	-	chr15	63042683	63071323	TPM1|ENST00000560975.5	+	63042683,63056984,63059562,63060868,63061197,63062575,63071089	63043831,63057118,63059680,63060939,63062277,63062645,63071323	0.619048
gastroesophageal_sphincter_female_adult_51_years	chr7	103353938	103353957	103353938	+	High_confidence	2	2	7	0.323845	2.807355	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr17	61955382	61955385	61955384	-	RAMPAGE_only	3	5	7	0.323845	2.521641	chr17	61954857	61955361	LTR|ERVL-MaLR|MLT1D	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.857143
gastroesophageal_sphincter_female_adult_51_years	chr2	11345395	11345456	11345455	-	High_confidence	7	7	26	1.202854	4.180833	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11179758	11345407	ROCK2|NM_001321643.1	-	11179758,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345407	0.615385
gastroesophageal_sphincter_female_adult_51_years	chr19	16082029	16082035	16082034	+	High_confidence	3	4	7	0.323845	2.584963	chr19	16082077	16082207	SINE|MIR|MIRb	+	chr19	16081722	16093581	TPM4|ENST00000592138.5	+	16081722,16086422,16088026,16089044,16093535	16082046,16086540,16088097,16089120,16093581	0.714286
gastroesophageal_sphincter_female_adult_51_years	chr18	48621508	48621531	48621508	+	High_confidence	8	9	22	1.017800	3.880180	chr18	48621468	48621857	LINE|L2|L2a	-	chr18	48621443	48711657	CTIF|ENST00000589585.1	+	48621443,48636613,48663751,48664446,48670668,48711618	48621641,48636685,48663825,48664551,48670744,48711657	0.590909
gastroesophageal_sphincter_female_adult_51_years	chr1	97904648	97904676	97904675	-	RAMPAGE_only	5	5	11	0.508900	2.913977	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr12	112506802	112506845	112506812	+	RAMPAGE_only	9	9	22	1.017800	3.653757	chr12	112506599	112506946	LTR|ERVL-MaLR|MLT1H	-	chr12	112418913	112509913	PTPN11|ENST00000351677.6	+	112418913,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486474,112488442,112489023,112502143,112504694,112505824	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504796,112509913	0.954545
gastroesophageal_sphincter_female_adult_51_years	chr10	122127024	122127025	122127024	+	High_confidence	4	4	6	0.277582	2.584963	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr4	173369499	173369535	173369499	-	High_confidence	2	2	13	0.601427	2.584963	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.846154
gastroesophageal_sphincter_female_adult_51_years	chr2	159382558	159382569	159382566	-	RAMPAGE_only	2	2	8	0.370109	2.521641	chr2	159382314	159382523	SINE|MIR|MIRb	-	chr2	159318978	159616569	BAZ2B|ENST00000392782.5	-	159318978,159324810,159325652,159332539,159336941,159337566,159347485,159348677,159349006,159349707,159373044,159374690,159382558,159383605,159385154,159386352,159389344,159395768,159397344,159398828,159400598,159404848,159405021,159412334,159428310,159429199,159430862,159432756,159438302,159439008,159446781,159448241,159453612,159478574,159555822,159616241	159320418,159324954,159325918,159332686,159337077,159337772,159347646,159348833,159349280,159350357,159373189,159374753,159382802,159383680,159385369,159386607,159389485,159395834,159397389,159398894,159400664,159404910,159405114,159412545,159428419,159429260,159431156,159433363,159438695,159439212,159446975,159448403,159453801,159478721,159555865,159616569	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr1	219218517	219218541	219218517	+	RAMPAGE_only	2	3	11	0.508900	2.921928	chr1	219218401	219218614	DNA|hAT-Charlie|MER30	+	chr1	219173895	219241309	STRG.9401.2	+	219173895,219179146,219179399,219193081,219210531,219211491,219218517,219241198	219173981,219179246,219179426,219193251,219210647,219211752,219218712,219241309	0.545455
gastroesophageal_sphincter_female_adult_51_years	chr12	131000409	131000426	131000425	+	RAMPAGE_only	2	2	7	0.323845	2.584963	chr12	131000459	131000769	SINE|Alu|AluSx1	+	chr12	131002498	131141460	ADGRD1|ENST00000376682.8	+	131002498,131003184,131004185,131005971,131014198,131076800,131084539,131104830,131105753,131108723,131118384,131120846,131131724,131136036,131136972,131138136,131139167	131002837,131003302,131004296,131006047,131014340,131076874,131084663,131104934,131105865,131108877,131118451,131120913,131131816,131136163,131137014,131138229,131141460	0.857143
gastroesophageal_sphincter_female_adult_51_years	chrX	19350015	19350041	19350015	+	RAMPAGE_only	3	3	10	0.462636	3.121928	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19355317	19359025	PDHA1|ENST00000481733.1	+	19355317,19355685,19357651,19358915	19355504,19355757,19357719,19359025	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr1	162781264	162781295	162781286	+	RAMPAGE_only	49	51	108	4.996471	5.451756	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.972222
gastroesophageal_sphincter_female_adult_51_years	chr19	3667321	3667343	3667321	-	High_confidence	11	11	26	1.202854	3.242126	chr19	3667202	3667314	SINE|MIR|MIR3	-	chr19	3630182	3667344	STRG.111250.5	-	3630182,3633436,3638883,3641704,3642906,3643242,3644086,3645973,3647337,3648624,3651825,3653289,3656404,3660965,3661870,3664821,3667321	3633169,3633520,3639016,3641809,3642939,3643381,3644251,3646058,3647386,3648708,3652031,3653589,3656557,3661526,3662001,3664914,3667344	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr6	35680264	35680267	35680266	-	RAMPAGE_only	5	7	10	0.462636	2.947703	chr6	35680148	35680449	SINE|Alu|AluJr	+	chr6	35573589	35688915	STRG.47610.1	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35643276,35646162,35646729,35672591,35678957,35684376,35688093	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35642843,35643348,35646366,35646850,35672759,35680422,35684485,35688915	0.800000
gastroesophageal_sphincter_female_adult_51_years	chr4	55416039	55416059	55416058	+	High_confidence	5	6	12	0.555163	2.594907	chr4	55415845	55416154	SINE|Alu|AluJb	-	chr4	55415270	55425545	TMEM165|ENST00000514904.5	+	55415270,55417071,55417802,55424537,55425375	55416157,55417247,55417985,55424643,55425545	0.833333
gastroesophageal_sphincter_female_adult_51_years	chr9	125337302	125337323	125337302	+	RAMPAGE_only	2	2	8	0.370109	2.750000	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125302306	125342234	GAPVD1|ENST00000436712.2	+	125302306,125305062,125307412,125307690,125309928,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176,125342218	125302826,125305149,125307547,125307880,125310009,125312612,125321499,125323923,125326589,125330218,125332060,125332629,125337095,125337591,125341264,125342234	0.625000
gastroesophageal_sphincter_female_adult_51_years	chr17	42403131	42403803	42403802	-	RAMPAGE_only	130	131	958	44.320546	7.450714	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr19	54448601	54448602	54448601	+	High_confidence	8	8	10	0.462636	2.721928	chr19	54448651	54448966	SINE|Alu|AluSg	+	chr19	54448886	54462037	LENG8|ENST00000326764.9	+	54448886,54451289,54452092,54452650,54453545,54454429,54454950,54455363,54455966,54456324,54456635,54457746,54457933,54458102,54458313,54460765	54449310,54451382,54452267,54452752,54453656,54454682,54455092,54455567,54456245,54456465,54456921,54457848,54458002,54458232,54458521,54462037	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr12	643625	643636	643625	-	High_confidence	22	23	80	3.701089	5.442140	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.650000
gastroesophageal_sphincter_female_adult_51_years	chr1	51366187	51366222	51366187	-	RAMPAGE_only	3	3	12	0.555163	2.913977	chr1	51366072	51366367	SINE|Alu|AluJb	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.750000
gastroesophageal_sphincter_female_adult_51_years	chr6	118651538	118651593	118651563	-	High_confidence	48	48	258	11.936014	6.335709	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.980620
gastroesophageal_sphincter_female_adult_51_years	chr2	222599966	222600011	222600010	-	RAMPAGE_only	3	4	11	0.508900	2.550341	chr2	222599989	222600062	LINE|RTE-BovB|MamRTE1	-	chr2	222570535	222656337	FARSB|ENST00000281828.6	-	222570535,222599927,222613810,222619644,222623649,222624271,222624713,222628836,222630112,222631603,222633198,222634390,222639579,222640861,222642850,222648739,222656015	222572022,222600083,222613928,222619737,222623730,222624479,222624775,222628888,222630174,222631674,222633307,222634541,222639695,222640931,222643005,222648795,222656337	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr4	79492595	79492601	79492595	+	High_confidence	7	7	12	0.555163	3.277613	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.916667
gastroesophageal_sphincter_female_adult_51_years	chr12	12184059	12184085	12184059	-	RAMPAGE_only	3	3	9	0.416373	2.750000	chr12	12183981	12184016	LINE|RTE-BovB|MamRTE1	-	chr12	12116028	12244304	LRP6|ENST00000538239.5	-	12116028,12120369,12121085,12124564,12125295,12126690,12130782,12131820,12135174,12138324,12147365,12148941,12150835,12158828,12159779,12162192,12164272,12165078,12179809,12181042,12183979,12186922,12203202,12244261	12119330,12120403,12121420,12124662,12125432,12126921,12130893,12132057,12135300,12138534,12147556,12149153,12151038,12159155,12159964,12162419,12164562,12165295,12179981,12181439,12184111,12187119,12203400,12244304	0.888889
gastroesophageal_sphincter_female_adult_51_years	chr2	72693353	72693354	72693353	-	RAMPAGE_only	17	17	25	1.156590	2.855539	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.920000
gastroesophageal_sphincter_female_adult_51_years	chr5	96979809	96979835	96979809	+	RAMPAGE_only	3	3	17	0.786482	3.572469	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	0.941176
gastroesophageal_sphincter_female_adult_51_years	chr17	59619894	59619923	59619894	+	High_confidence	1679	1863	4559	210.915836	5.102739	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.976311
gastroesophageal_sphincter_female_adult_51_years	chr3	188153195	188153257	188153195	+	High_confidence	6	7	33	1.526699	4.030639	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.666667
gastroesophageal_sphincter_female_adult_51_years	chr16	70250616	70250642	70250616	-	RAMPAGE_only	3	3	17	0.786482	2.822182	chr16	70250387	70250696	SINE|Alu|AluSx	+	chr16	70246777	70251930	EXOSC6|ENST00000435634.2	-	70246777	70251930	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr10	92826829	92826851	92826850	+	High_confidence	13	15	37	1.711754	3.986180	chr10	92826510	92827023	LINE|L2|L2a	-	chr10	92826830	93059494	EXOC6|NM_001013848.3	+	92826830,92834712,92893348,92894793,92894929,92899598,92909426,92915757,92919981,92928338,92934143,92934309,92935813,92940726,92948273,92952272,92954629,92955579,92974052,92997473,93014193,93056923,93058222	92826944,92834824,92893520,92894841,92895020,92899644,92909631,92915913,92920050,92928422,92934190,92934430,92935885,92940824,92948379,92952382,92954741,92955714,92974232,92997615,93014267,93057036,93059494	0.891892
gastroesophageal_sphincter_female_adult_51_years	chr5	73078287	73078288	73078287	+	RAMPAGE_only	7	7	10	0.462636	3.121928	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.900000
gastroesophageal_sphincter_female_adult_51_years	chr1	155343321	155343324	155343323	-	RAMPAGE_only	5	9	9	0.416373	2.947703	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr4	141332616	141332617	141332616	-	High_confidence	75	76	83	3.839880	4.306055	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr11	71999614	71999642	71999614	+	High_confidence	16	21	63	2.914608	4.691605	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.952381
gastroesophageal_sphincter_female_adult_51_years	chr21	45134715	45134727	45134715	+	High_confidence	5	8	15	0.693954	3.773557	chr21	45134610	45134741	LINE|L1|L1M	+	chr21	45134795	45226559	ADARB1|ENST00000629643.2	+	45134795,45171609,45175729,45180329,45182584,45183361,45184922,45204554,45220835,45222017,45225546	45134832,45171684,45176664,45180444,45182753,45183510,45185091,45204736,45221014,45223577,45226559	0.866667
gastroesophageal_sphincter_female_adult_51_years	chr22	18149851	18149869	18149868	+	High_confidence	8	8	21	0.971536	3.916127	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.952381
gastroesophageal_sphincter_female_adult_51_years	chr5	88282809	88282838	88282809	+	RAMPAGE_only	3	3	19	0.879009	3.892407	chr5	88282583	88283084	DNA|TcMar-Tigger|Tigger7	-	chr5	88270505	88287657	TMEM161B-AS1|ENST00000507736.1	+	88270505,88282041,88282714,88285740,88287435	88270585,88282106,88282866,88285851,88287657	0.684211
gastroesophageal_sphincter_female_adult_51_years	chr6	122444139	122444465	122444225	-	RAMPAGE_only	104	104	930	43.025165	5.735819	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	0.998925
gastroesophageal_sphincter_female_adult_51_years	chr6	43025277	43025312	43025307	+	High_confidence	4	4	20	0.925272	3.681881	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.950000
gastroesophageal_sphincter_female_adult_51_years	chr7	2242922	2242923	2242922	+	High_confidence	11	11	11	0.508900	3.277613	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr1	33021455	33021456	33021455	-	RAMPAGE_only	34	37	42	1.943072	4.140085	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.952381
gastroesophageal_sphincter_female_adult_51_years	chr12	120465645	120465739	120465645	-	High_confidence	5	6	33	1.526699	4.195816	chr12	120465539	120465607	SINE|MIR|MIRb	-	chr12	120461710	120464943	SRSF9|ENST00000548792.1	-	120461710,120463949	120462162,120464943	0.939394
gastroesophageal_sphincter_female_adult_51_years	chr12	22150379	22150385	22150384	-	RAMPAGE_only	5	5	13	0.601427	3.238901	chr12	22147464	22152713	LINE|L1|L1PA7	+	chr12	22107158	22118489	ST8SIA1|ENST00000537795.1	-	22107158,22118311	22107536,22118489	0.538462
gastroesophageal_sphincter_female_adult_51_years	chr2	217939269	217939270	217939269	-	RAMPAGE_only	10	10	10	0.462636	3.321928	chr2	217939059	217939291	SINE|MIR|MIR	-	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.600000
gastroesophageal_sphincter_female_adult_51_years	chr10	4678176	4678190	4678189	-	High_confidence	3	3	11	0.508900	2.646439	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.636364
gastroesophageal_sphincter_female_adult_51_years	chr14	81170408	81170420	81170419	-	High_confidence	4	4	15	0.693954	3.324863	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.866667
gastroesophageal_sphincter_female_adult_51_years	chr3	52255631	52255843	52255696	-	RAMPAGE_only	8	13	121	5.597898	4.878010	chr3	52255678	52255749	SINE|MIR|MIR	+	chr3	52254959	52268138	WDR82|ENST00000487402.1	-	52254959,52258535,52259196,52259716,52260384,52261379,52266951	52257519,52258678,52259266,52259872,52260501,52261479,52268138	0.933884
gastroesophageal_sphincter_female_adult_51_years	chr11	58578102	58578145	58578132	-	High_confidence	17	22	93	4.302517	5.339986	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.827957
gastroesophageal_sphincter_female_adult_51_years	chr12	103774421	103774453	103774430	-	RAMPAGE_only	4	4	13	0.601427	3.180833	chr12	103774399	103774712	SINE|Alu|AluSq2	+	chr12	103772302	103841197	NT5DC3|NM_001031701.2	-	103772302,103780299,103785334,103787440,103788837,103793163,103793409,103793936,103796893,103798586,103806321,103806854,103814936,103840948	103778081,103780364,103785475,103787527,103788919,103793265,103793512,103793997,103797031,103798677,103806377,103806929,103815121,103841197	1.000000
gastroesophageal_sphincter_female_adult_51_years	chr1	77924727	77924728	77924727	+	RAMPAGE_only	7	7	8	0.370109	2.807355	chr1	77924648	77924959	SINE|Alu|AluJb	-	chr1	77918127	77943895	NEXN|ENST00000342754.5	+	77918127,77925187,77926413,77926715,77929315,77933281,77935822,77942022,77942460,77942899	77918273,77925229,77926611,77926892,77929504,77933479,77936044,77942208,77942818,77943895	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr16	87381469	87381483	87381469	-	RAMPAGE_only	3	3	8	0.370109	2.500000	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87330810	87383748	STRG.104256.1	-	87330810,87333885,87335303,87336154,87342876,87343597,87347173,87358410,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87358497,87360366,87383748	0.625000
gastroesophageal_sphincter_female_adult_51_years	chr7	134947254	134947288	134947254	+	RAMPAGE_only	4	4	22	1.017800	4.011365	chr7	134946986	134947284	LINE|L1|L1MB2	-	chr7	134941181	134948102	CALD1|ENST00000472096.1	+	134941181,134947507	134941237,134948102	0.863636
gastroesophageal_sphincter_female_adult_51_years	chr4	1241490	1241491	1241490	-	RAMPAGE_only	10	11	15	0.693954	2.692381	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1248740	CTBP1|ENST00000513420.1	-	1225437,1228198,1238182,1241324,1248660	1225566,1228343,1238337,1241519,1248740	0.933333
gastroesophageal_sphincter_female_adult_51_years	chr8	27992905	27992906	27992905	-	High_confidence	6	8	8	0.370109	2.807355	chr8	27992843	27993071	DNA|TcMar-Mariner|MARNA	+	chr8	27869881	27992852	SCARA5|NM_173833.5	-	27869881,27879568,27904777,27907147,27909662,27921570,27966413,27987503,27992256	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27987630,27992852	0.875000
gastroesophageal_sphincter_female_adult_51_years	chr4	86453184	86453232	86453202	-	High_confidence	19	23	95	4.395044	5.388268	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.800000
gastroesophageal_sphincter_female_adult_51_years	chr16	27243356	27243371	27243370	-	RAMPAGE_only	8	8	14	0.647691	3.324863	chr16	27243362	27243410	LINE|L2|L2c	+	chr16	27226730	27268760	NSMCE1|ENST00000566087.5	-	27226730,27233000,27234187,27235177,27241352,27241798,27257434,27268705	27226836,27233147,27234265,27235299,27241484,27241889,27257581,27268760	0.500000
gastroesophageal_sphincter_female_adult_51_years	chr3	195688752	195688762	195688752	+	High_confidence	1	1	7	0.323845	2.584963	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688755	195708806	MUC20-OT1|ENST00000628547.2	+	195688755,195689338,195696360,195699029,195708133,195708746	195688797,195689438,195696589,195699178,195708435,195708806	0.714286
gastroesophageal_sphincter_female_adult_51_years	chr5	149409400	149409646	149409585	+	RAMPAGE_only	13	14	208	9.622833	6.167989	chr5	149409401	149409639	SINE|MIR|MIRb	-	chr5	149407244	149412768	CARMN|ENST00000614517.1	+	149407244	149412768	0.990385
gastroesophageal_sphincter_female_adult_51_years	chr19	17336685	17336720	17336685	+	High_confidence	8	8	25	1.156590	4.168296	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.840000
gastroesophageal_sphincter_female_adult_53_years	chrX	16712869	16712891	16712889	-	High_confidence	11	12	23	1.776199	4.011365	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.913043
gastroesophageal_sphincter_female_adult_53_years	chr3	45034819	45034853	45034852	+	RAMPAGE_only	4	4	13	1.003939	2.918296	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	0.923077
gastroesophageal_sphincter_female_adult_53_years	chr19	9140390	9140428	9140393	+	High_confidence	28	28	63	4.865242	4.921499	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.825397
gastroesophageal_sphincter_female_adult_53_years	chr1	174874418	174874441	174874427	+	High_confidence	4	5	26	2.007878	4.085055	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.692308
gastroesophageal_sphincter_female_adult_53_years	chr14	50756826	50756845	50756826	-	RAMPAGE_only	3	3	11	0.849487	2.663533	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
gastroesophageal_sphincter_female_adult_53_years	chrX	5726073	5726129	5726128	-	RAMPAGE_only	14	14	57	4.401885	4.420095	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719346	5719841	STRG.41739.1	-	5719346	5719841	0.789474
gastroesophageal_sphincter_female_adult_53_years	chr9	68975783	68975784	68975783	-	High_confidence	7	7	9	0.695035	2.725481	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.555556
gastroesophageal_sphincter_female_adult_53_years	chr17	2975657	2975665	2975660	+	RAMPAGE_only	2	4	9	0.695035	3.169925	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2980283	3008090	STRG.34676.3	+	2980283,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010	2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008090	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr11	60182550	60182587	60182550	-	High_confidence	5	6	19	1.467295	3.260828	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.578947
gastroesophageal_sphincter_female_adult_53_years	chr16	15798662	15798670	15798664	-	RAMPAGE_only	334	521	818	63.170916	6.618291	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.943765
gastroesophageal_sphincter_female_adult_53_years	chr12	123390748	123390761	123390760	+	High_confidence	4	4	9	0.695035	2.725481	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr1	162597847	162597850	162597849	+	High_confidence	4	8	9	0.695035	2.503258	chr1	162597899	162598081	LINE|L1|L1MA7	+	chr1	162597240	162599799	UAP1|ENST00000486089.1	+	162597240,162599270	162597858,162599799	0.888889
gastroesophageal_sphincter_female_adult_53_years	chr6	28354199	28354206	28354199	-	High_confidence	4	5	12	0.926713	2.732159	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324736	28354195	ZSCAN31|ENST00000396838.6	-	28324736,28327382,28329302,28336789,28337755,28341745,28353861,28354130	28326854,28327533,28329714,28336943,28337893,28341792,28353952,28354195	0.666667
gastroesophageal_sphincter_female_adult_53_years	chr8	102275542	102275570	102275542	-	RAMPAGE_only	3	3	17	1.312843	3.405639	chr8	102275368	102275493	LINE|L1|L1ME3E	-	chr8	102271193	102276820	UBR5|ENST00000521566.1	-	102271193,102272528,102275520,102275707,102276773	102271245,102272772,102275619,102275828,102276820	0.647059
gastroesophageal_sphincter_female_adult_53_years	chr4	185620097	185620124	185620116	-	RAMPAGE_only	8	9	27	2.085104	3.676391	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.777778
gastroesophageal_sphincter_female_adult_53_years	chr17	42403787	42403871	42403827	-	RAMPAGE_only	7	11	53	4.092981	4.624858	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	0.962264
gastroesophageal_sphincter_female_adult_53_years	chr3	151531368	151531372	151531369	-	RAMPAGE_only	2	3	7	0.540582	2.584963	chr3	151528406	151534796	LINE|L1|L1PA7	+	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.857143
gastroesophageal_sphincter_female_adult_53_years	chr2	159769872	159769887	159769872	-	RAMPAGE_only	3	5	8	0.617808	2.500000	chr2	159769826	159770011	DNA|hAT-Charlie|MER3	+	chr2	159768852	159798242	CD302|ENST00000259053.5	-	159768852,159777937,159780004,159780881,159783358,159798131	159772053,159777964,159780178,159780998,159783469,159798242	0.875000
gastroesophageal_sphincter_female_adult_53_years	chr1	202585185	202585306	202585185	+	RAMPAGE_only	6	6	47	3.629625	3.861661	chr1	202585028	202585296	SINE|Alu|AluJb	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr6	79631256	79631329	79631302	+	High_confidence	69	71	340	26.256860	6.501597	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.982353
gastroesophageal_sphincter_female_adult_53_years	chr17	59892716	59892753	59892716	-	High_confidence	2	3	8	0.617808	2.750000	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr11	71999605	71999612	71999607	+	High_confidence	7	12	22	1.698973	3.916127	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999600	72002697	IL18BP|ENST00000534583.5	+	71999600,72000350,72001200,72001404,72001783,72002552	72000012,72000557,72001324,72001552,72001948,72002697	0.818182
gastroesophageal_sphincter_female_adult_53_years	chr7	40509494	40509498	40509494	+	High_confidence	76	76	151	11.661135	5.268837	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40509489	40860763	STRG.17901.3	+	40509489,40749433,40860315	40509545,40749497,40860763	0.960265
gastroesophageal_sphincter_female_adult_53_years	chr6	130978738	130978739	130978738	-	High_confidence	7	7	7	0.540582	2.521641	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.857143
gastroesophageal_sphincter_female_adult_53_years	chr5	109383439	109383479	109383478	-	High_confidence	2	2	7	0.540582	2.521641	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr12	12927733	12927741	12927733	+	High_confidence	14	14	26	2.007878	3.772055	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.653846
gastroesophageal_sphincter_female_adult_53_years	chr9	39810023	39810034	39810033	-	High_confidence	13	13	23	1.776199	3.784942	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.652174
gastroesophageal_sphincter_female_adult_53_years	chr20	37297366	37297388	37297387	+	High_confidence	3	3	7	0.540582	2.584963	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.857143
gastroesophageal_sphincter_female_adult_53_years	chr7	11194701	11194723	11194708	+	High_confidence	6	6	17	1.312843	3.130718	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11194705	11244479	AC004160.1|ENST00000627042.2	+	11194705,11197309,11240536,11244257	11194784,11197444,11240731,11244479	0.529412
gastroesophageal_sphincter_female_adult_53_years	chr7	158740240	158740281	158740280	-	RAMPAGE_only	22	22	74	5.714728	5.324186	chr7	158740209	158740388	LTR|ERV1|MER49	+	chr7	158733612	158744217	ESYT2|ENST00000435514.3	-	158733612,158734421,158735502,158737047,158739022,158741522,158743528	158734252,158734471,158735608,158737179,158739121,158741896,158744217	0.824324
gastroesophageal_sphincter_female_adult_53_years	chr2	28664494	28664537	28664536	-	RAMPAGE_only	5	5	25	1.930651	4.055958	chr2	28664229	28664729	LTR|ERVL|LTR18B	+	chr2	28621238	28641162	STRG.4478.2	-	28621238,28641139	28622071,28641162	0.600000
gastroesophageal_sphincter_female_adult_53_years	chr17	59620042	59620049	59620042	+	High_confidence	6	8	14	1.081165	3.238901	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59695112	STRG.35987.1	+	59619942,59644275,59647397,59648239,59651202,59655853,59660390,59661442,59663841,59664786,59666102,59666479,59666796,59668776,59673646,59674700,59676953,59679396,59680911,59681294,59681646,59682270,59682628,59682906,59683094,59683386,59683624,59683874,59685055,59685586,59687000,59690635,59693727	59620173,59644483,59647666,59648401,59651316,59656027,59660588,59661643,59663994,59664909,59666240,59666644,59666977,59668940,59673772,59674843,59677188,59679519,59681057,59681478,59681839,59682428,59682793,59683014,59683262,59683536,59683756,59683985,59685226,59685808,59687021,59690711,59695112	0.928571
gastroesophageal_sphincter_female_adult_53_years	chr12	104030726	104030727	104030726	+	High_confidence	32	32	44	3.397947	4.942275	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.977273
gastroesophageal_sphincter_female_adult_53_years	chr17	42403958	42404286	42403958	-	RAMPAGE_only	11	11	169	13.051204	6.319660	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr7	154928503	154928506	154928503	+	High_confidence	14	15	25	1.930651	3.886842	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.920000
gastroesophageal_sphincter_female_adult_53_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	12	12	16	1.235617	3.373557	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.875000
gastroesophageal_sphincter_female_adult_53_years	chr19	48589076	48589104	48589076	+	RAMPAGE_only	5	5	18	1.390069	3.350209	chr19	48588603	48589545	LINE|L2|L2a	-	chr19	48591679	48599413	STRG.38808.1	+	48591679,48592721,48596738,48599134	48591735,48592816,48596919,48599413	0.944444
gastroesophageal_sphincter_female_adult_53_years	chr2	86482561	86482578	86482577	+	RAMPAGE_only	8	9	14	1.081165	2.950212	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.642857
gastroesophageal_sphincter_female_adult_53_years	chr2	36513735	36513760	36513735	+	High_confidence	8	9	35	2.702912	4.378864	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.685714
gastroesophageal_sphincter_female_adult_53_years	chr21	44962830	44962831	44962830	+	RAMPAGE_only	4	4	7	0.540582	2.521641	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44959138	44976973	STRG.40815.4	+	44959138,44960099,44967033,44973196,44976679	44959253,44960168,44967181,44973265,44976973	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr2	48479384	48479385	48479384	+	RAMPAGE_only	70	72	84	6.486989	5.402801	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48471310	48498501	PPP1R21|ENST00000455978.1	+	48471310,48474682,48479483,48479923,48486630,48491017,48495678,48498492	48471367,48474819,48479556,48480016,48486758,48491170,48495771,48498501	0.523810
gastroesophageal_sphincter_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	85	85	85	6.564215	4.175059	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.976471
gastroesophageal_sphincter_female_adult_53_years	chr12	110440319	110440374	110440319	-	RAMPAGE_only	11	12	28	2.162330	4.208410	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.964286
gastroesophageal_sphincter_female_adult_53_years	chr2	10844318	10844421	10844373	+	High_confidence	18	18	87	6.718667	4.730590	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844259	10885117	STRG.4215.1	+	10844259,10878270,10884833	10844505,10878444,10885117	0.724138
gastroesophageal_sphincter_female_adult_53_years	chr5	172954093	172954094	172954093	+	High_confidence	7	7	8	0.617808	2.521641	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172954057	172969718	STRG.14640.3	+	172954057,172959864,172968458,172969412	172954336,172960041,172968599,172969718	0.875000
gastroesophageal_sphincter_female_adult_53_years	chr16	8842153	8842205	8842153	+	High_confidence	14	14	35	2.702912	4.369707	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.885714
gastroesophageal_sphincter_female_adult_53_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	23	25	61	4.710790	5.125501	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.901639
gastroesophageal_sphincter_female_adult_53_years	chr2	200889279	200889318	200889279	-	High_confidence	6	6	20	1.544521	3.921928	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889276	PPIL3|ENST00000465823.5	-	200870955,200876918,200881420,200885697,200887612,200888955	200871521,200877037,200881488,200885772,200887685,200889276	0.750000
gastroesophageal_sphincter_female_adult_53_years	chr10	17617796	17617798	17617796	-	High_confidence	6	9	10	0.772261	2.503258	chr10	17617759	17617913	SINE|Alu|FRAM	-	chr10	17589031	17617377	HACD1|ENST00000361271.7	-	17589031,17594204,17599289,17603559,17603725,17603929,17617082	17590446,17594383,17599411,17603648,17603744,17604047,17617377	0.600000
gastroesophageal_sphincter_female_adult_53_years	chrX	48683361	48683363	48683362	+	High_confidence	15	23	23	1.776199	3.882045	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.913043
gastroesophageal_sphincter_female_adult_53_years	chr20	50131130	50131140	50131139	-	High_confidence	27	29	65	5.019694	5.206973	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.969231
gastroesophageal_sphincter_female_adult_53_years	chr20	38985964	38985986	38985968	+	High_confidence	13	13	50	3.861303	4.743465	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38985969	39039715	STRG.39895.3	+	38985969,38988812,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38986012,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039715	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	13	14	16	1.235617	3.640224	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182909114	183038472	NCKAP1|ENST00000361354.8	-	182909114,182926815,182928116,182928782,182930694,182934751,182935292,182942069,182952404,182952792,182953112,182956461,182957456,182962158,182964675,182967215,182976892,182978833,182981243,182982820,182983285,182986170,182989029,182994838,182995700,183001952,183002126,183002973,183003232,183023805,183037991	182925818,182926905,182928226,182928899,182930788,182934832,182935375,182942163,182952502,182952923,182953331,182956593,182957596,182962278,182964808,182967361,182976951,182978915,182981376,182982927,182983382,182986227,182989186,182994887,182995838,183002043,183002269,183003030,183003325,183023916,183038472	0.937500
gastroesophageal_sphincter_female_adult_53_years	chr1	153967486	153967501	153967486	+	High_confidence	10	11	20	1.544521	3.616349	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967838	153974364	CREB3L4|NM_001255980.1	+	153967838,153968521,153968929,153969333,153972743,153972971,153973194,153973379,153973619,153973871	153968164,153968639,153969176,153969455,153972836,153973078,153973263,153973464,153973716,153974364	0.550000
gastroesophageal_sphincter_female_adult_53_years	chr4	139509387	139509404	139509387	-	RAMPAGE_only	5	5	15	1.158391	2.872906	chr4	139509339	139509538	DNA|hAT-Charlie|Charlie30a	-	chr4	139506037	139556769	SETD7|NM_030648.3	-	139506037,139517884,139520276,139523353,139529030,139533164,139546919,139556097	139511843,139518042,139520394,139523435,139529220,139533366,139547049,139556769	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr9	35657466	35657478	35657477	+	High_confidence	4	4	12	0.926713	2.688722	chr9	35657503	35657740	SINE|Alu|AluJb	+	chr9	35658289	35661503	CCDC107|NM_174923.2	+	35658289,35658575,35660400,35660556,35660745	35658485,35658727,35660461,35660647,35661503	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr3	16228543	16228574	16228561	+	RAMPAGE_only	5	7	23	1.776199	2.975317	chr3	16228359	16228663	SINE|Alu|AluSx	+	chr3	16219399	16229745	GALNT15|ENST00000617544.3	+	16219399,16219909,16222614,16227353,16227444	16219534,16220014,16222758,16227443,16229745	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr15	99098339	99098342	99098341	+	High_confidence	3	5	7	0.540582	2.584963	chr15	99098258	99098383	SINE|MIR|MIRb	-	chr15	99098216	99135593	SYNM|ENST00000560674.5	+	99098216,99113590,99126721,99129366,99132749	99098637,99113715,99126792,99131813,99135593	0.714286
gastroesophageal_sphincter_female_adult_53_years	chr12	7502503	7502544	7502503	-	High_confidence	7	7	23	1.776199	3.879664	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.956522
gastroesophageal_sphincter_female_adult_53_years	chr18	34709346	34709374	34709369	+	High_confidence	4	5	17	1.312843	3.327820	chr18	34709150	34709395	LINE|L2|L2c	-	chr18	34710231	34868812	DTNA|NM_001198941.1	+	34710231,34755975,34765960,34794036,34806218,34811958,34815908,34818163,34820790,34827592,34848295,34851830,34858284,34863965,34866110	34710445,34756043,34766041,34794250,34806304,34812113,34816014,34818330,34820915,34827676,34848383,34851928,34858398,34864062,34868812	0.647059
gastroesophageal_sphincter_female_adult_53_years	chr9	39810081	39810116	39810093	-	High_confidence	9	9	41	3.166268	4.173910	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39777349	39810097	GLIDR|ENST00000638724.1	-	39777349,39778893,39809485,39809730	39778566,39778944,39809615,39810097	0.609756
gastroesophageal_sphincter_female_adult_53_years	chr20	45833293	45833321	45833293	-	High_confidence	7	7	47	3.629625	4.393689	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.978723
gastroesophageal_sphincter_female_adult_53_years	chr3	188877596	188877612	188877596	+	RAMPAGE_only	5	5	14	1.081165	2.896292	chr3	188877563	188877737	SINE|Alu|AluJr	+	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr13	27445109	27445129	27445109	-	RAMPAGE_only	3	3	13	1.003939	2.855389	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.923077
gastroesophageal_sphincter_female_adult_53_years	chr8	39082991	39083066	39083065	+	RAMPAGE_only	4	6	20	1.544521	3.821928	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.550000
gastroesophageal_sphincter_female_adult_53_years	chr16	27243323	27243380	27243370	-	RAMPAGE_only	6	6	24	1.853425	4.053509	chr16	27243362	27243410	LINE|L2|L2c	+	chr16	27233069	27258151	NSMCE1|ENST00000563900.5	-	27233069,27234187,27235177,27257434,27258083	27233147,27234265,27235299,27257581,27258151	0.708333
gastroesophageal_sphincter_female_adult_53_years	chr1	202582251	202582285	202582283	+	RAMPAGE_only	4	6	15	1.158391	2.896292	chr1	202581884	202582432	LINE|CR1|L3	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.933333
gastroesophageal_sphincter_female_adult_53_years	chr3	69237179	69237186	69237179	-	RAMPAGE_only	5	5	14	1.081165	2.807355	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	1.000000
gastroesophageal_sphincter_female_adult_53_years	chrX	103577210	103577212	103577211	+	High_confidence	6	10	10	0.772261	2.646439	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr3	28347653	28347654	28347653	-	High_confidence	7	7	8	0.617808	2.521641	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.875000
gastroesophageal_sphincter_female_adult_53_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	18	22	22	1.698973	3.459432	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888512	77933384	NEXN|ENST00000401035.7	+	77888512,77916054,77917959,77918124,77925187,77926413,77926715,77929315,77933281	77888759,77916133,77918038,77918273,77925229,77926611,77926892,77929504,77933384	0.954545
gastroesophageal_sphincter_female_adult_53_years	chr1	86747021	86747038	86747037	+	RAMPAGE_only	2	2	6	0.463356	2.584963	chr1	86746989	86747096	LINE|CR1|L3	-	chr1	86704575	86748184	SH3GLB1|ENST00000370558.8	+	86704575,86715723,86719506,86722539,86724312,86734601,86735078,86742207,86743127	86704971,86715865,86719635,86722673,86724405,86734691,86735179,86742436,86748184	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr12	65464131	65464219	65464218	+	RAMPAGE_only	7	10	35	2.702912	4.171861	chr12	65463992	65464279	SINE|Alu|AluY	+	chr12	65279484	65466868	MSRB3|ENST00000642404.1	+	65279484,65306862,65308528,65326825,65328525,65368997,65453727,65463154	65279517,65307026,65308655,65326934,65328603,65369026,65453825,65466868	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr2	29114158	29114162	29114158	+	High_confidence	4	4	9	0.695035	2.725481	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.888889
gastroesophageal_sphincter_female_adult_53_years	chr6	140898419	140898430	140898419	-	RAMPAGE_only	7	7	23	1.776199	3.762267	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140852924	AL035446.1|ENST00000455011.1	-	140845957,140852818	140846304,140852924	0.869565
gastroesophageal_sphincter_female_adult_53_years	chr5	77088061	77088098	77088061	+	High_confidence	3	3	10	0.772261	2.921928	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088058	77148533	ZBED3-AS1|ENST00000646953.1	+	77088058,77118319,77147651	77088472,77118521,77148533	0.700000
gastroesophageal_sphincter_female_adult_53_years	chr16	15710484	15710518	15710517	-	High_confidence	3	3	11	0.849487	2.913977	chr16	15710240	15710545	SINE|Alu|AluSc	+	chr16	15703740	15711270	MYH11|ENST00000573908.1	-	15703740,15711112	15704123,15711270	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr12	15001808	15001826	15001817	+	High_confidence	4	4	13	1.003939	2.931209	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.692308
gastroesophageal_sphincter_female_adult_53_years	chr11	123061147	123061297	123061256	-	High_confidence	20	24	118	9.112675	5.634091	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.974576
gastroesophageal_sphincter_female_adult_53_years	chr9	39809856	39809879	39809856	-	High_confidence	3	3	10	0.772261	2.521928	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr9	129698737	129698760	129698737	+	RAMPAGE_only	9	12	18	1.390069	3.308271	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr12	46266488	46266516	46266515	-	High_confidence	15	19	52	4.015755	4.512470	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.980769
gastroesophageal_sphincter_female_adult_53_years	chr2	96303166	96303216	96303166	-	RAMPAGE_only	5	5	18	1.390069	3.266333	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr10	30999519	30999520	30999519	-	High_confidence	6	6	8	0.617808	3.000000	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.500000
gastroesophageal_sphincter_female_adult_53_years	chr8	116648828	116648865	116648828	-	RAMPAGE_only	3	3	10	0.772261	3.169925	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.900000
gastroesophageal_sphincter_female_adult_53_years	chr21	28750659	28750695	28750670	-	RAMPAGE_only	9	10	21	1.621747	3.826875	chr21	28750417	28750720	SINE|Alu|AluSz	+	chr21	28441914	28772198	STRG.40505.4	-	28441914,28577218,28626584,28771993	28446472,28577380,28626676,28772198	0.714286
gastroesophageal_sphincter_female_adult_53_years	chr8	99892056	99892057	99892056	-	RAMPAGE_only	127	127	181	13.977917	4.739723	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.994475
gastroesophageal_sphincter_female_adult_53_years	chr8	53523963	53523968	53523963	-	High_confidence	9	11	21	1.621747	4.011365	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
gastroesophageal_sphincter_female_adult_53_years	chrX	124242989	124242998	124242991	+	RAMPAGE_only	3	5	9	0.695035	2.725481	chrX	124242976	124243273	SINE|Alu|AluSz6	-	chrX	124246248	124336840	TEX13D|ENST00000635518.1	+	124246248,124335351	124246337,124336840	0.555556
gastroesophageal_sphincter_female_adult_53_years	chr14	44912628	44912629	44912628	-	High_confidence	7	7	11	0.849487	2.732159	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44912617	STRG.30638.1	-	44898907,44899229,44911756,44912452	44899076,44899313,44911860,44912617	0.727273
gastroesophageal_sphincter_female_adult_53_years	chr17	49646471	49646501	49646498	-	High_confidence	21	21	156	12.047265	4.871032	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49619045	49646622	STRG.35835.11	-	49619045,49619233,49621945,49622732,49646115	49619108,49619385,49622067,49622876,49646622	0.974359
gastroesophageal_sphincter_female_adult_53_years	chr2	218287266	218287280	218287279	-	High_confidence	49	49	105	8.108736	5.407627	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.676190
gastroesophageal_sphincter_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	96	96	100	7.722606	3.900648	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.880000
gastroesophageal_sphincter_female_adult_53_years	chrX	5726311	5726325	5726324	-	High_confidence	84	92	142	10.966100	5.109688	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.873239
gastroesophageal_sphincter_female_adult_53_years	chr9	92536601	92536602	92536601	-	High_confidence	16	17	17	1.312843	3.155639	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92493546	92536092	ECM2|NM_001197296.1	-	92493546,92500726,92502512,92505532,92509898,92512010,92514630,92517686,92522574,92535932	92494149,92501053,92502652,92505690,92510034,92512126,92515137,92517875,92522893,92536092	0.941176
gastroesophageal_sphincter_female_adult_53_years	chr6	29497474	29497475	29497474	+	High_confidence	6	6	8	0.617808	2.500000	chr6	29497305	29497670	LTR|ERVL-MaLR|THE1D	+	chr6	29497508	29510556	AL662860.1|ENST00000436804.1	+	29497508,29505320,29507168,29510267	29497539,29505377,29507668,29510556	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr1	21875639	21875658	21875639	-	RAMPAGE_only	5	8	15	1.158391	2.950212	chr1	21875470	21875616	SINE|MIR|MIRb	-	chr1	21822244	21896271	STRG.460.3	-	21822244,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884677,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896271	0.933333
gastroesophageal_sphincter_female_adult_53_years	chr5	172954046	172954055	172954054	+	High_confidence	5	5	14	1.081165	3.238901	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172954057	172969718	STRG.14640.3	+	172954057,172959864,172968458,172969412	172954336,172960041,172968599,172969718	0.785714
gastroesophageal_sphincter_female_adult_53_years	chr15	42415320	42415367	42415322	-	RAMPAGE_only	8	13	32	2.471234	4.343139	chr15	42415122	42415421	SINE|Alu|AluSq2	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr9	98943543	98943583	98943575	+	High_confidence	13	15	66	5.096920	5.378148	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.984848
gastroesophageal_sphincter_female_adult_53_years	chr10	102449836	102449870	102449869	+	High_confidence	4	4	16	1.235617	3.000000	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449852	102456293	RPARP-AS1|ENST00000492465.2	+	102449852,102450186,102451398,102452089,102455336	102450022,102450360,102451555,102452187,102456293	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr12	12927684	12927702	12927701	+	RAMPAGE_only	4	4	9	0.695035	2.725481	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12979836	12984645	GPRC5D-AS1|ENST00000499948.2	+	12979836,12979999,12983343	12979888,12980391,12984645	0.777778
gastroesophageal_sphincter_female_adult_53_years	chr5	140655901	140655989	140655988	+	RAMPAGE_only	10	11	98	7.568154	5.166198	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.959184
gastroesophageal_sphincter_female_adult_53_years	chr7	158863386	158863401	158863388	+	RAMPAGE_only	7	12	25	1.930651	3.803509	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.760000
gastroesophageal_sphincter_female_adult_53_years	chr22	42721166	42721167	42721166	-	High_confidence	20	20	20	1.544521	3.546439	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr3	188225403	188225480	188225403	+	High_confidence	8	8	54	4.170207	4.949151	chr3	188225342	188225427	SINE|MIR|MIR3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr5	128082264	128082287	128082264	-	High_confidence	3	3	15	1.158391	2.973557	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	128024026	128082960	LINC01184|ENST00000508878.5	-	128024026,128061143,128076946,128081972,128082734	128024298,128061244,128077093,128082194,128082960	0.933333
gastroesophageal_sphincter_female_adult_53_years	chr3	14047155	14047156	14047155	-	High_confidence	7	7	9	0.695035	2.725481	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14041291	14046894	STRG.7689.1	-	14041291,14046812	14041628,14046894	0.777778
gastroesophageal_sphincter_female_adult_53_years	chr12	56157397	56157459	56157397	+	High_confidence	3	3	15	1.158391	3.640224	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.800000
gastroesophageal_sphincter_female_adult_53_years	chr1	147172956	147172984	147172975	+	High_confidence	4	5	17	1.312843	3.572469	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.941176
gastroesophageal_sphincter_female_adult_53_years	chr12	45973702	45973724	45973723	-	RAMPAGE_only	3	3	6	0.463356	2.584963	chr12	45973038	45974003	LINE|L1|L1MD2	+	chr12	45919130	45990565	SCAF11|ENST00000369367.7	-	45919130,45922462,45922935,45924727,45926141,45931505,45933130,45934175,45934446,45945248,45948436,45951649,45961699,45964106,45990352	45922194,45922582,45923154,45925074,45928859,45931612,45933232,45934285,45934505,45945313,45948537,45951727,45961857,45964188,45990565	0.833333
gastroesophageal_sphincter_female_adult_53_years	chr10	98391170	98391171	98391170	-	RAMPAGE_only	11	11	17	1.312843	2.875000	chr10	98391143	98391387	LINE|L2|L2c	+	chr10	98383730	98395294	STRG.24538.2	-	98383730,98384946,98387200,98388353,98390597,98391009,98392431,98392941,98395195	98383868,98385067,98387307,98388508,98390754,98391082,98392566,98393083,98395294	0.882353
gastroesophageal_sphincter_female_adult_53_years	chrX	124243024	124243046	124243024	+	RAMPAGE_only	5	5	10	0.772261	3.121928	chrX	124242976	124243273	SINE|Alu|AluSz6	-	chrX	124246248	124336840	TEX13D|ENST00000635518.1	+	124246248,124335351	124246337,124336840	0.800000
gastroesophageal_sphincter_female_adult_53_years	chr5	172958912	172958925	172958924	+	High_confidence	5	5	18	1.390069	2.863826	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr4	102431228	102431248	102431247	-	High_confidence	12	13	29	2.239556	4.021268	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.965517
gastroesophageal_sphincter_female_adult_53_years	chr15	80059918	80059933	80059918	+	High_confidence	181	205	375	28.959772	5.361214	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.992000
gastroesophageal_sphincter_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	101	101	101	7.799832	3.613425	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.970297
gastroesophageal_sphincter_female_adult_53_years	chr15	75879133	75879163	75879162	+	RAMPAGE_only	3	3	9	0.695035	2.503258	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75868950	75899577	UBE2Q2|ENST00000567921.1	+	75868950,75873427,75883365,75896994,75899426	75869010,75873568,75883424,75897061,75899577	0.777778
gastroesophageal_sphincter_female_adult_53_years	chr21	45563132	45563153	45563152	-	High_confidence	15	16	28	2.162330	3.642371	chr21	45562422	45564060	LINE|L1|L1MC3	+	chr21	45513775	45563156	STRG.40839.2	-	45513775,45525816,45530769,45531388,45537770,45562741	45516140,45525958,45530971,45532148,45538008,45563156	0.892857
gastroesophageal_sphincter_female_adult_53_years	chr8	53523862	53523891	53523885	-	High_confidence	5	5	19	1.467295	3.826875	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr7	140526411	140526412	140526411	-	RAMPAGE_only	6	6	8	0.617808	2.500000	chr7	140526325	140526369	DNA|hAT-Tip100|MER96	-	chr7	140518459	140602512	DENND2A|ENST00000461883.5	-	140518459,140519631,140521854,140523306,140525750,140527317,140544617,140546798,140555635,140558142,140559707,140567085,140568762,140569644,140573807,140585588,140587652,140601402	140518738,140519718,140522100,140523424,140525792,140527437,140544766,140546939,140555713,140558212,140559817,140567273,140568813,140569738,140574008,140585710,140587780,140602512	0.750000
gastroesophageal_sphincter_female_adult_53_years	chrX	5726193	5726194	5726193	-	RAMPAGE_only	19	20	25	1.930651	3.468577	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5719346	5719841	STRG.41739.1	-	5719346	5719841	0.520000
gastroesophageal_sphincter_female_adult_53_years	chr20	17573071	17573094	17573071	+	RAMPAGE_only	12	13	41	3.166268	4.521829	chr20	17572958	17573157	LTR|ERV1|MER92D	-	chr20	17570089	17607222	DSTN|ENST00000449141.2	+	17570089,17600737,17604554,17605109,17607036	17570211,17601045,17604631,17605211,17607222	0.780488
gastroesophageal_sphincter_female_adult_53_years	chr19	45450739	45450758	45450739	-	High_confidence	4	4	12	0.926713	2.625815	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.833333
gastroesophageal_sphincter_female_adult_53_years	chr7	30159834	30160146	30159981	+	RAMPAGE_only	6	8	143	11.043326	6.045746	chr7	30159975	30160088	SINE|MIR|MIRc	+	chr7	30145800	30162760	MTURN|ENST00000324489.5	+	30145800,30146176,30157437	30145959,30146299,30162760	0.993007
gastroesophageal_sphincter_female_adult_53_years	chr15	56737904	56737906	56737904	-	RAMPAGE_only	18	38	39	3.011816	4.405822	chr15	56737845	56738254	LTR|ERVL-MaLR|MLT1J2	+	chr15	56630175	56734086	ZNF280D|NM_001002843.2	-	56630175,56635194,56642951,56654197,56654384,56658423,56666394,56666678,56668822,56676669,56677573,56678663,56682253,56689040,56689299,56693097,56700932,56701172,56704120,56707262,56733457	56632122,56635250,56642997,56654234,56654503,56658486,56666535,56666986,56668957,56676816,56677674,56678821,56682477,56689150,56689470,56693215,56701072,56701238,56704267,56707306,56734086	0.897436
gastroesophageal_sphincter_female_adult_53_years	chr12	56157286	56157352	56157351	+	High_confidence	9	9	35	2.702912	4.014439	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.885714
gastroesophageal_sphincter_female_adult_53_years	chr10	70425277	70425278	70425277	+	RAMPAGE_only	10	10	14	1.081165	2.623517	chr10	70424911	70425430	LTR|ERVL-MaLR|MLT1F1	-	chr10	70404378	70428618	EIF4EBP2|ENST00000373218.4	+	70404378,70419913,70421715	70404546,70420099,70428618	0.928571
gastroesophageal_sphincter_female_adult_53_years	chr6	48111164	48111181	48111180	-	RAMPAGE_only	7	8	24	1.853425	3.970176	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47878027	48068689	PTCHD4|NM_001013732.3	-	47878027,48008633,48068229	47879936,48009114,48068689	0.666667
gastroesophageal_sphincter_female_adult_53_years	chr20	50172537	50172562	50172561	+	High_confidence	3	3	7	0.540582	2.521641	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.857143
gastroesophageal_sphincter_female_adult_53_years	chr15	42415491	42415607	42415606	-	RAMPAGE_only	14	16	64	4.942468	4.590018	chr15	42415465	42415574	DNA|hAT-Charlie|Charlie4z	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr15	90467522	90467534	90467522	+	RAMPAGE_only	2	2	7	0.540582	2.521641	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90388260	90500371	IQGAP1|ENST00000560738.1	+	90388260,90390773,90466046,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390824,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500371	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr1	12409848	12409855	12409854	+	High_confidence	14	15	25	1.930651	4.001629	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12409750	12512037	STRG.286.6	+	12409750,12415086,12416659,12455997,12460200,12497499,12506852,12508892,12511421	12409894,12415221,12416827,12456130,12460396,12497631,12507093,12511342,12512037	0.960000
gastroesophageal_sphincter_female_adult_53_years	chr14	81427443	81427467	81427443	-	High_confidence	4	6	13	1.003939	2.777363	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.923077
gastroesophageal_sphincter_female_adult_53_years	chr20	3795759	3795792	3795782	+	High_confidence	8	11	42	3.243494	4.473048	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.976190
gastroesophageal_sphincter_female_adult_53_years	chr8	26395611	26395612	26395611	+	High_confidence	6	7	9	0.695035	2.503258	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.777778
gastroesophageal_sphincter_female_adult_53_years	chr7	101217578	101217599	101217578	-	High_confidence	6	6	17	1.312843	3.577820	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.941176
gastroesophageal_sphincter_female_adult_53_years	chr1	183590913	183590926	183590913	-	High_confidence	6	6	12	0.926713	3.084963	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.750000
gastroesophageal_sphincter_female_adult_53_years	chr5	133089588	133089678	133089677	+	RAMPAGE_only	7	7	42	3.243494	4.594466	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.976190
gastroesophageal_sphincter_female_adult_53_years	chr20	44696111	44696112	44696111	-	High_confidence	22	26	26	2.007878	4.132944	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.538462
gastroesophageal_sphincter_female_adult_53_years	chr5	172954171	172954207	172954206	+	High_confidence	20	20	34	2.625686	4.124084	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172954057	172969718	STRG.14640.3	+	172954057,172959864,172968458,172969412	172954336,172960041,172968599,172969718	0.970588
gastroesophageal_sphincter_female_adult_53_years	chr19	19668150	19668174	19668173	+	High_confidence	9	9	25	1.930651	4.213661	chr19	19668164	19668579	LTR|ERV1|LTR21B	-	chr19	19668152	19683506	ZNF101|NM_001300949.1	+	19668152,19677863,19678725,19679180	19668207,19677986,19678786,19683506	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr8	27977120	27977126	27977125	-	High_confidence	103	118	182	14.055143	5.932465	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977115	STRG.19948.4	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977115	0.917582
gastroesophageal_sphincter_female_adult_53_years	chr2	62724476	62724519	62724518	+	RAMPAGE_only	19	20	41	3.166268	4.304257	chr2	62722846	62724681	LINE|L1|L1PA13	-	chr2	62707191	63045500	EHBP1|ENST00000405289.5	+	62707191,62747394,62764265,62771338,62826086,62831018,62859168,62864730,62874345,62942717,62943801,62948259,62955516,62979187,62987930,62990715,62993529,62993870,62996642,63037534,63038742,63045065,63045409	62707295,62747452,62764361,62771392,62826268,62831158,62859291,62864971,62874532,62942896,62943850,62949162,62955660,62979335,62988038,62990840,62993668,62993977,62996766,63037634,63038816,63045180,63045500	0.926829
gastroesophageal_sphincter_female_adult_53_years	chr18	7946878	7946898	7946878	+	High_confidence	9	9	17	1.312843	3.381580	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.823529
gastroesophageal_sphincter_female_adult_53_years	chr18	36807846	36807870	36807846	-	High_confidence	2	2	10	0.772261	2.725481	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.800000
gastroesophageal_sphincter_female_adult_53_years	chr16	761100	761125	761114	+	High_confidence	11	11	43	3.320721	4.693479	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.953488
gastroesophageal_sphincter_female_adult_53_years	chr12	132782351	132782395	132782351	-	RAMPAGE_only	4	4	10	0.772261	2.921928	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132773259	132776692	GOLGA3|ENST00000541013.2	-	132773259,132774156,132775065,132776633	132773294,132774320,132775305,132776692	0.500000
gastroesophageal_sphincter_female_adult_53_years	chr1	77129077	77129078	77129077	+	High_confidence	951	1126	1143	88.269385	5.745124	chr1	77128993	77129084	DNA|hAT-Charlie|MER58B	+	chr1	77129113	77129721	STRG.1489.1	+	77129113,77129364	77129335,77129721	0.975503
gastroesophageal_sphincter_female_adult_53_years	chr2	229586902	229586923	229586902	-	High_confidence	3	3	10	0.772261	2.646439	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229357628	229586877	STRG.7196.1	-	229357628,229366872,229388264,229407231,229418107,229447315,229477139,229512782,229544764,229546946,229585857,229586693	229358651,229367119,229388396,229407345,229418230,229447540,229477253,229512936,229544827,229547092,229586024,229586877	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr17	64320572	64320606	64320605	-	RAMPAGE_only	2	2	9	0.695035	3.000000	chr17	64320358	64320776	LINE|L2|L2c	+	chr17	64319414	64390854	STRG.36092.1	-	64319414,64319530,64329699,64341633,64348259,64350379,64352389,64353490,64354932,64356110,64360139,64363148,64369749,64375050,64377823,64390488,64390601	64319478,64323845,64329722,64341690,64348322,64350433,64352463,64353518,64355040,64356398,64360415,64363397,64370025,64375356,64378117,64390515,64390854	0.888889
gastroesophageal_sphincter_female_adult_53_years	chr17	19386326	19386460	19386333	-	High_confidence	5	7	42	3.243494	4.570609	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.976190
gastroesophageal_sphincter_female_adult_53_years	chr1	202551736	202551798	202551797	+	RAMPAGE_only	10	11	36	2.780138	4.593400	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.750000
gastroesophageal_sphincter_female_adult_53_years	chrX	136168208	136168209	136168208	+	High_confidence	4	4	7	0.540582	2.584963	chrX	136168049	136168241	SINE|MIR|MIR	-	chrX	136168193	136208575	FHL1|ENST00000434885.5	+	136168193,136169906,136206406,136207015,136207791,136208454	136168267,136169980,136206588,136207190,136207961,136208575	0.714286
gastroesophageal_sphincter_female_adult_53_years	chr22	50785226	50785258	50785226	+	RAMPAGE_only	3	3	12	0.926713	2.855389	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr20	44532569	44532570	44532569	+	High_confidence	23	23	27	2.085104	4.083856	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.925926
gastroesophageal_sphincter_female_adult_53_years	chr5	40981752	40981848	40981752	+	RAMPAGE_only	17	17	96	7.413702	5.037491	chr5	40981792	40981922	SINE|MIR|MIR3	+	chr5	40909496	40982939	C7|NM_000587.2	+	40909496,40928579,40931063,40934324,40936337,40937551,40945197,40947601,40949903,40955386,40958032,40959448,40962084,40964740,40972402,40976749,40979724,40981391	40909616,40928635,40931139,40934466,40936485,40937690,40945368,40947845,40950014,40955553,40958261,40959620,40962172,40964873,40972594,40976840,40979909,40982939	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr3	188217298	188217329	188217323	+	RAMPAGE_only	3	5	13	1.003939	3.700440	chr3	188216938	188217653	LINE|L2|L2b	-	chr3	188212932	188890671	LPP|NM_005578.4	+	188212932,188225404,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188213046,188225527,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.923077
gastroesophageal_sphincter_female_adult_53_years	chr2	217937254	217937255	217937254	-	High_confidence	11	11	11	0.849487	3.095795	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.727273
gastroesophageal_sphincter_female_adult_53_years	chr19	35115816	35115845	35115822	+	High_confidence	9	10	44	3.397947	3.600922	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.931818
gastroesophageal_sphincter_female_adult_53_years	chr3	49468643	49468679	49468669	+	High_confidence	7	7	17	1.312843	2.952820	chr3	49468531	49468836	SINE|Alu|AluSx1	-	chr3	49468702	49535618	DAG1|NM_001177643.2	+	49468702,49510418,49530796	49469055,49510819,49535618	0.941176
gastroesophageal_sphincter_female_adult_53_years	chr2	113117970	113117976	113117970	+	High_confidence	4	5	10	0.772261	2.725481	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.900000
gastroesophageal_sphincter_female_adult_53_years	chr9	98943483	98943494	98943493	+	High_confidence	3	3	7	0.540582	2.521641	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr10	92826829	92826851	92826829	+	High_confidence	3	3	14	1.081165	2.985228	chr10	92826510	92827023	LINE|L2|L2a	-	chr10	92826830	93059494	EXOC6|NM_001013848.3	+	92826830,92834712,92893348,92894793,92894929,92899598,92909426,92915757,92919981,92928338,92934143,92934309,92935813,92940726,92948273,92952272,92954629,92955579,92974052,92997473,93014193,93056923,93058222	92826944,92834824,92893520,92894841,92895020,92899644,92909631,92915913,92920050,92928422,92934190,92934430,92935885,92940824,92948379,92952382,92954741,92955714,92974232,92997615,93014267,93057036,93059494	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr17	47067498	47067534	47067498	-	High_confidence	148	162	519	40.080324	5.662569	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.932563
gastroesophageal_sphincter_female_adult_53_years	chr17	77127869	77127873	77127872	+	High_confidence	6	6	12	0.926713	3.418296	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.750000
gastroesophageal_sphincter_female_adult_53_years	chr16	15838799	15838831	15838825	-	RAMPAGE_only	2	2	12	0.926713	2.663533	chr16	15838577	15838884	SINE|Alu|AluSz	+	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.916667
gastroesophageal_sphincter_female_adult_53_years	chr2	48479481	48479482	48479481	+	RAMPAGE_only	16	17	18	1.390069	3.836592	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48440796	48515386	PPP1R21|ENST00000294952.12	+	48440796,48451007,48454594,48458125,48459753,48460094,48461137,48464936,48465492,48471086,48471278,48474682,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48441010,48451076,48454741,48458227,48459918,48460153,48461232,48464989,48465642,48471188,48471367,48474819,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515386	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr12	28825959	28825962	28825961	-	High_confidence	8	13	19	1.467295	3.511085	chr12	28825676	28826170	LTR|ERVL|MLT2B3	-	chr12	28821974	28825831	AC022081.1|ENST00000537327.1	-	28821974,28825697	28822273,28825831	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr4	87499826	87499845	87499844	-	RAMPAGE_only	3	3	8	0.617808	2.521641	chr4	87499693	87499843	LINE|RTE-BovB|MamRTE1	-	chr4	87473417	87529092	SPARCL1|ENST00000503414.5	-	87473417,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87497130,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87497239,87499585,87529092	0.875000
gastroesophageal_sphincter_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	754	901	1705	131.670430	4.940534	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.980059
gastroesophageal_sphincter_female_adult_53_years	chr22	39021146	39021161	39021146	+	High_confidence	2	2	10	0.772261	2.947703	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021155	39029403	STRG.41383.1	+	39021155,39022821,39029362	39021536,39023014,39029403	0.800000
gastroesophageal_sphincter_female_adult_53_years	chr4	87524562	87524573	87524562	-	RAMPAGE_only	10	11	24	1.853425	3.913977	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87473417	87529092	SPARCL1|ENST00000503414.5	-	87473417,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87497130,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87497239,87499585,87529092	0.916667
gastroesophageal_sphincter_female_adult_53_years	chr12	119179203	119179315	119179219	+	High_confidence	6	6	51	3.938529	3.718528	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr1	6820185	6820199	6820197	+	RAMPAGE_only	3	6	11	0.849487	2.921928	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6853094	6872045	CAMTA1|ENST00000472283.1	+	6853094,6871756	6853189,6872045	0.909091
gastroesophageal_sphincter_female_adult_53_years	chr10	45000487	45000524	45000514	+	High_confidence	10	19	57	4.401885	5.012911	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.929825
gastroesophageal_sphincter_female_adult_53_years	chr12	91179462	91179463	91179462	-	High_confidence	19284	19854	27501	2123.793835	7.766606	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.882804
gastroesophageal_sphincter_female_adult_53_years	chr21	36005313	36005320	36005319	+	High_confidence	12	12	20	1.544521	3.536887	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.850000
gastroesophageal_sphincter_female_adult_53_years	chr3	14047205	14047216	14047205	-	High_confidence	31	34	47	3.629625	4.284007	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14041291	14046894	STRG.7689.1	-	14041291,14046812	14041628,14046894	0.872340
gastroesophageal_sphincter_female_adult_53_years	chr1	54277532	54277555	54277532	-	RAMPAGE_only	5	5	10	0.772261	2.921928	chr1	54277464	54277668	SINE|MIR|MIR1_Amn	+	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.600000
gastroesophageal_sphincter_female_adult_53_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	20	20	20	1.544521	3.921928	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr4	87524657	87524688	87524679	-	RAMPAGE_only	2	2	10	0.772261	2.725481	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87494416	87528619	SPARCL1|ENST00000535835.5	-	87494416,87494980,87499520,87504821,87528554	87494598,87495127,87499585,87504923,87528619	0.600000
gastroesophageal_sphincter_female_adult_53_years	chr5	55982772	55982800	55982799	-	High_confidence	8	9	28	2.162330	3.940760	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr12	103777101	103777300	103777236	-	RAMPAGE_only	24	24	128	9.884935	3.526808	chr12	103777216	103777295	DNA|TcMar-Tigger|Tigger19b	+	chr12	103772302	103841197	NT5DC3|NM_001031701.2	-	103772302,103780299,103785334,103787440,103788837,103793163,103793409,103793936,103796893,103798586,103806321,103806854,103814936,103840948	103778081,103780364,103785475,103787527,103788919,103793265,103793512,103793997,103797031,103798677,103806377,103806929,103815121,103841197	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr19	47780100	47780109	47780107	+	High_confidence	5	8	14	1.081165	3.324863	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr1	19344388	19344410	19344388	-	RAMPAGE_only	5	5	15	1.158391	2.840224	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr2	3536822	3536882	3536856	-	High_confidence	5	7	33	2.548460	3.968340	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.878788
gastroesophageal_sphincter_female_adult_53_years	chr9	18702070	18702071	18702070	-	High_confidence	36	40	47	3.629625	4.799062	chr9	18701896	18702263	LTR|ERVL-MaLR|THE1B	-	chr9	18656957	18702058	STRG.21573.1	-	18656957,18670172,18694347,18701979	18657739,18670287,18694419,18702058	0.872340
gastroesophageal_sphincter_female_adult_53_years	chr9	129488856	129488866	129488856	+	High_confidence	11	11	18	1.390069	2.974938	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr19	36850361	36850372	36850371	+	High_confidence	6	7	14	1.081165	2.623517	chr19	36850362	36850429	LTR|ERV1|MER67D	-	chr19	36850360	36879572	ZNF345|ENST00000589046.1	+	36850360,36851727,36876784	36850515,36851904,36879572	0.785714
gastroesophageal_sphincter_female_adult_53_years	chr4	79492600	79492601	79492600	+	High_confidence	8	8	11	0.849487	2.921928	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492602	79516948	STRG.11276.1	+	79492602,79493151,79513784,79516892	79492623,79493585,79513902,79516948	0.727273
gastroesophageal_sphincter_female_adult_53_years	chr14	68882879	68883044	68882879	-	High_confidence	29	32	240	18.534254	5.840301	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.958333
gastroesophageal_sphincter_female_adult_53_years	chr1	20685295	20685307	20685306	-	High_confidence	3	3	10	0.772261	3.121928	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.900000
gastroesophageal_sphincter_female_adult_53_years	chr8	107363039	107363040	107363039	-	RAMPAGE_only	10	10	13	1.003939	3.418296	chr8	107363039	107363288	SINE|MIR|MIRc	+	chr8	107251511	107336522	ANGPT1|ENST00000520734.5	-	107251511,107264220,107284681,107293935,107303239,107321895,107336149,107336383	107252015,107264351,107284848,107294037,107303367,107322128,107336271,107336522	0.538462
gastroesophageal_sphincter_female_adult_53_years	chr19	11196131	11196182	11196131	-	High_confidence	9	9	44	3.397947	3.849743	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.818182
gastroesophageal_sphincter_female_adult_53_years	chr1	39310256	39310293	39310282	+	RAMPAGE_only	5	5	25	1.930651	3.290322	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.920000
gastroesophageal_sphincter_female_adult_53_years	chr12	103777331	103777550	103777440	-	RAMPAGE_only	12	12	122	9.421579	3.613674	chr12	103777412	103777488	LINE|L2|L2b	+	chr12	103772302	103841197	NT5DC3|NM_001031701.2	-	103772302,103780299,103785334,103787440,103788837,103793163,103793409,103793936,103796893,103798586,103806321,103806854,103814936,103840948	103778081,103780364,103785475,103787527,103788919,103793265,103793512,103793997,103797031,103798677,103806377,103806929,103815121,103841197	0.959016
gastroesophageal_sphincter_female_adult_53_years	chr2	10844223	10844267	10844266	+	High_confidence	14	14	58	4.479111	5.175056	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844259	10885117	STRG.4215.1	+	10844259,10878270,10884833	10844505,10878444,10885117	0.724138
gastroesophageal_sphincter_female_adult_53_years	chr6	108960768	108960828	108960797	+	RAMPAGE_only	3	3	13	1.003939	3.026987	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108953030	108974231	STRG.16461.2	+	108953030,108961571,108962013,108964179,108964979,108973356	108953351,108961694,108962127,108964312,108965140,108974231	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr21	44962754	44962791	44962754	+	RAMPAGE_only	13	21	61	4.710790	4.975652	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44959138	44976973	STRG.40815.4	+	44959138,44960099,44967033,44973196,44976679	44959253,44960168,44967181,44973265,44976973	0.786885
gastroesophageal_sphincter_female_adult_53_years	chr20	18794063	18794086	18794085	+	High_confidence	9	9	23	1.776199	3.936180	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr2	48529366	48529376	48529375	+	High_confidence	3	4	8	0.617808	2.750000	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr4	184537514	184537550	184537536	-	High_confidence	5	5	16	1.235617	2.682589	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.562500
gastroesophageal_sphincter_female_adult_53_years	chr22	50757129	50757134	50757129	+	High_confidence	4	4	8	0.617808	2.521641	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.875000
gastroesophageal_sphincter_female_adult_53_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	25	26	31	2.394008	4.189898	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.709677
gastroesophageal_sphincter_female_adult_53_years	chrX	103607570	103607580	103607579	+	High_confidence	8	8	18	1.390069	3.292770	chrX	103607556	103607707	SINE|MIR|MIRb	+	chrX	103607450	103609927	TCEAL3|ENST00000372628.5	+	103607450,103608603,103609042	103607716,103608673,103609927	0.944444
gastroesophageal_sphincter_female_adult_53_years	chr9	20658592	20658624	20658623	+	High_confidence	3	3	11	0.849487	2.846439	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.909091
gastroesophageal_sphincter_female_adult_53_years	chr9	92536703	92536704	92536703	-	High_confidence	5	5	7	0.540582	2.521641	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.714286
gastroesophageal_sphincter_female_adult_53_years	chr11	117836274	117836298	117836297	+	High_confidence	9	9	22	1.698973	3.458525	chr11	117836254	117836523	SINE|Alu|AluJb	-	chr11	117837200	117838179	STRG.26899.1	+	117837200	117838179	0.727273
gastroesophageal_sphincter_female_adult_53_years	chr4	48012935	48012945	48012944	-	High_confidence	6	6	13	1.003939	2.873141	chr4	48012591	48013262	LTR|ERV1|MER4-int	-	chr4	47935976	48012944	CNGA1|NM_000087.3	-	47935976,47940762,47942040,47943180,47943370,47949832,47951352,47952582,47981392,48010793,48012888	47937829,47940869,47942148,47943288,47943412,47949895,47951469,47952703,47981500,48010893,48012944	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr11	77175226	77175260	77175226	+	High_confidence	7	7	16	1.235617	3.750000	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175304	77194474	STRG.26278.1	+	77175304,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194474	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr11	123060135	123060256	123060255	-	High_confidence	15	17	157	12.124491	5.400367	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.585987
gastroesophageal_sphincter_female_adult_53_years	chr1	162781398	162781450	162781398	+	RAMPAGE_only	5	6	36	2.780138	3.533985	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr1	89272844	89272900	89272856	-	High_confidence	6	7	40	3.089042	3.682840	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr6	28354137	28354153	28354137	-	High_confidence	12	13	25	1.930651	3.657268	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329373	28354132	STRG.15294.5	-	28329373,28336789,28353861	28329778,28336943,28354132	0.560000
gastroesophageal_sphincter_female_adult_53_years	chr4	141212896	141212907	141212896	-	High_confidence	5	5	19	1.467295	2.865577	chr4	141212711	141212921	LTR|ERVL-MaLR|MSTA	-	chr4	140865570	141212877	RNF150|ENST00000420921.6	-	140865570,140911143,140925976,140947653,140949300,140967622,141053665,141212793	140868379,140911354,140926073,140947736,140949372,140967873,141053731,141212877	0.789474
gastroesophageal_sphincter_female_adult_53_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	7	7	7	0.540582	2.521641	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr9	37426648	37426649	37426648	+	RAMPAGE_only	8	8	9	0.695035	2.500000	chr9	37426667	37426970	SINE|Alu|AluSx3	+	chr9	37427705	37436989	GRHPR|ENST00000497693.1	+	37427705,37436660	37432138,37436989	0.888889
gastroesophageal_sphincter_female_adult_53_years	chr1	175177662	175177663	175177662	-	RAMPAGE_only	8	8	10	0.772261	2.725481	chr1	175177563	175177679	SINE|MIR|MIRc	+	chr1	175156986	175166741	KIAA0040|ENST00000619513.1	-	175156986,175166561	175161146,175166741	0.800000
gastroesophageal_sphincter_female_adult_53_years	chr19	34860385	34860389	34860385	-	High_confidence	2	2	6	0.463356	2.584963	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.833333
gastroesophageal_sphincter_female_adult_53_years	chr3	135965682	135965749	135965723	+	High_confidence	36	59	236	18.225350	5.950634	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.995763
gastroesophageal_sphincter_female_adult_53_years	chr19	51795160	51795177	51795176	+	High_confidence	4	6	14	1.081165	3.378783	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr3	151539270	151539292	151539291	-	RAMPAGE_only	3	3	9	0.695035	2.725481	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.888889
gastroesophageal_sphincter_female_adult_53_years	chr3	188885756	188885883	188885882	+	RAMPAGE_only	23	32	124	9.576031	5.242624	chr3	188885494	188885956	LINE|L1|L1PA3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.991935
gastroesophageal_sphincter_female_adult_53_years	chr14	73567613	73567629	73567616	+	High_confidence	33	36	86	6.641441	4.866601	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.930233
gastroesophageal_sphincter_female_adult_53_years	chr1	166850042	166850091	166850042	+	RAMPAGE_only	2	2	12	0.926713	3.095795	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.916667
gastroesophageal_sphincter_female_adult_53_years	chr12	9065167	9065174	9065173	+	High_confidence	17	17	44	3.397947	4.377394	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.818182
gastroesophageal_sphincter_female_adult_53_years	chr4	128570470	128570493	128570470	-	High_confidence	4	5	22	1.698973	3.820889	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.954545
gastroesophageal_sphincter_female_adult_53_years	chr4	86453195	86453254	86453202	-	High_confidence	12	12	48	3.706851	4.462581	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.979167
gastroesophageal_sphincter_female_adult_53_years	chr5	32403145	32403167	32403145	-	RAMPAGE_only	6	7	20	1.544521	3.384184	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354851	32444455	STRG.12625.2	-	32354851,32363947,32364163,32379114,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228	32355939,32364045,32364275,32379210,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444455	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr9	20658321	20658349	20658346	+	High_confidence	7	7	35	2.702912	3.949734	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.914286
gastroesophageal_sphincter_female_adult_53_years	chr6	26474341	26474346	26474345	+	RAMPAGE_only	5	5	10	0.772261	2.846439	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.900000
gastroesophageal_sphincter_female_adult_53_years	chr8	2726958	2726959	2726958	+	High_confidence	6	6	8	0.617808	2.500000	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.875000
gastroesophageal_sphincter_female_adult_53_years	chr10	32944223	32944237	32944223	-	RAMPAGE_only	4	4	8	0.617808	2.500000	chr10	32943699	32944208	LTR|ERVL|LTR16E1	-	chr10	32900317	32935558	ITGB1|NM_033668.2	-	32900317,32907062,32908367,32910222,32911447,32911885,32919884,32920244,32922256,32922639,32923584,32925870,32928093,32929821,32932514,32935491	32901635,32907143,32908534,32910455,32911670,32912124,32920084,32920385,32922346,32922735,32923740,32926109,32928264,32930044,32932600,32935558	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr2	217937115	217937162	217937115	-	High_confidence	18	19	56	4.324659	4.771195	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.535714
gastroesophageal_sphincter_female_adult_53_years	chr2	201115997	201116024	201115997	+	High_confidence	2	2	12	0.926713	3.251629	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.833333
gastroesophageal_sphincter_female_adult_53_years	chr11	58578102	58578156	58578132	-	High_confidence	6	9	30	2.316782	4.361406	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.900000
gastroesophageal_sphincter_female_adult_53_years	chr2	219425186	219425187	219425186	+	RAMPAGE_only	9	9	9	0.695035	2.725481	chr2	219424901	219425196	SINE|Alu|AluSg	-	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr2	219434273	219434284	219434273	+	High_confidence	10	10	18	1.390069	3.413834	chr2	219433955	219434290	LINE|L2|L2c	+	chr2	219434845	219493632	SPEG|ENST00000312358.11	+	219434845,219444652,219444824,219447973,219451135,219451624,219461881,219462297,219464432,219467173,219468577,219468858,219469155,219471867,219472226,219472889,219473503,219473727,219476869,219477276,219477688,219477904,219479143,219479782,219479961,219480670,219481303,219481637,219482783,219483097,219485345,219488193,219488497,219488777,219489053,219489335,219490408,219490732,219491793,219492110,219492593	219435365,219444742,219445161,219449271,219451279,219451807,219462057,219462386,219464608,219467434,219468736,219469048,219469379,219471987,219472331,219473096,219473627,219473903,219476982,219477445,219477785,219478105,219479201,219479860,219480140,219480697,219481456,219481680,219482852,219485072,219485477,219488310,219488665,219488900,219489221,219489939,219490648,219490956,219491869,219492260,219493632	0.833333
gastroesophageal_sphincter_female_adult_53_years	chr16	2757801	2757814	2757801	+	High_confidence	3	3	11	0.849487	2.913977	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2761707	STRG.33339.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746,2760300,2761560	2757945,2758547,2759047,2759172,2759402,2759661,2760008,2760499,2761707	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr1	150457295	150457335	150457295	+	RAMPAGE_only	2	2	13	1.003939	2.918296	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150364710	150473556	RPRD2|ENST00000369068.4	+	150364710,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150364919,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	0.923077
gastroesophageal_sphincter_female_adult_53_years	chrX	81262633	81262673	81262653	+	RAMPAGE_only	8	8	25	1.930651	4.023137	chrX	81262192	81262806	LINE|L1|L1MD3	+	chrX	81255493	81297516	SH3BGRL|ENST00000474113.1	+	81255493,81276983,81278330,81297194	81255643,81277169,81278411,81297516	0.800000
gastroesophageal_sphincter_female_adult_53_years	chr17	42403493	42403751	42403661	-	RAMPAGE_only	14	14	156	12.047265	6.080726	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr8	86417214	86417236	86417235	+	High_confidence	3	3	6	0.463356	2.584963	chr8	86417268	86417372	DNA|hAT-Charlie|MER58D	+	chr8	86417222	86431665	WWP1|ENST00000521079.1	+	86417222,86425222,86427642,86430696,86431405,86431614	86417279,86425318,86427817,86430751,86431490,86431665	0.500000
gastroesophageal_sphincter_female_adult_53_years	chr5	151687217	151687245	151687244	-	High_confidence	4	4	9	0.695035	3.000000	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.888889
gastroesophageal_sphincter_female_adult_53_years	chr4	152412488	152412529	152412488	-	High_confidence	6	7	20	1.544521	3.646439	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr12	122274056	122274103	122274056	-	RAMPAGE_only	2	2	9	0.695035	2.947703	chr12	122273741	122274010	SINE|Alu|AluSz	-	chr12	122272460	122275823	CLIP1|ENST00000501271.2	-	122272460,122274037	122273100,122275823	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr1	19980362	19980363	19980362	-	High_confidence	8	12	12	0.926713	3.084963	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr17	4143193	4143209	4143199	+	High_confidence	80	81	212	16.371924	5.160613	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.985849
gastroesophageal_sphincter_female_adult_53_years	chr15	65244454	65244455	65244454	-	RAMPAGE_only	7	7	10	0.772261	2.503258	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.900000
gastroesophageal_sphincter_female_adult_53_years	chr1	39026177	39026191	39026177	+	High_confidence	4	6	11	0.849487	2.721928	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.909091
gastroesophageal_sphincter_female_adult_53_years	chr3	188153178	188153196	188153195	+	High_confidence	10	11	18	1.390069	3.454822	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.944444
gastroesophageal_sphincter_female_adult_53_years	chr11	119314501	119314564	119314501	-	RAMPAGE_only	5	5	38	2.934590	4.323732	chr11	119314166	119314455	SINE|Alu|AluJr	-	chr11	119308528	119317116	MCAM|ENST00000264036.5	-	119308528,119310348,119310755,119311089,119311279,119311529,119311807,119312051,119312265,119312526,119312769,119314488,119314678,119314832,119315138,119317034	119309915,119310466,119310903,119311185,119311421,119311651,119311949,119312170,119312428,119312648,119312949,119314576,119314749,119315040,119315263,119317116	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr17	15475732	15475733	15475732	-	RAMPAGE_only	37	37	52	4.015755	4.573495	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15436014	15467611	CDRT4|ENST00000619038.4	-	15436014,15440207,15453003,15467459	15438200,15440285,15453085,15467611	0.923077
gastroesophageal_sphincter_female_adult_53_years	chr7	2242922	2242923	2242922	+	High_confidence	7	7	7	0.540582	2.521641	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr9	122164568	122164596	122164595	+	High_confidence	19	25	45	3.475173	4.383535	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122164589	122174627	STRG.22807.1	+	122164589,122166767,122174495	122164647,122166915,122174627	0.533333
gastroesophageal_sphincter_female_adult_53_years	chr12	79973216	79973232	79973223	+	RAMPAGE_only	4	4	12	0.926713	2.732159	chr12	79972933	79973792	LINE|L1|L1MC5a	+	chr12	80028892	80029631	RPL7P38|ENST00000488396.1	+	80028892	80029631	0.750000
gastroesophageal_sphincter_female_adult_53_years	chr8	56559496	56559497	56559496	-	High_confidence	121	121	164	12.665074	6.244161	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.597561
gastroesophageal_sphincter_female_adult_53_years	chr11	10574306	10574455	10574454	-	RAMPAGE_only	5	5	40	3.089042	3.699582	chr11	10574346	10574533	LINE|L2|L2c	-	chr11	10573090	10652185	MRVI1|ENST00000424001.5	-	10573090,10580454,10581866,10591547,10593491,10594145,10600917,10603119,10604404,10606741,10609727,10623777,10625965,10627715,10627972,10628750,10629537,10631990,10652024	10576575,10580589,10581986,10591612,10593599,10594195,10601059,10603251,10604545,10606772,10609851,10623856,10626583,10627763,10628025,10628828,10629711,10632061,10652185	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr1	23417927	23417941	23417927	-	RAMPAGE_only	2	2	8	0.617808	2.500000	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.875000
gastroesophageal_sphincter_female_adult_53_years	chr14	28613643	28613657	28613656	-	High_confidence	5	5	14	1.081165	3.378783	chr14	28613407	28613767	LTR|ERVL-MaLR|MLT1I	-	chr14	28592222	28613623	LINC02300|ENST00000549742.1	-	28592222,28612321,28613458	28592565,28612478,28613623	0.785714
gastroesophageal_sphincter_female_adult_53_years	chr4	75127224	75127272	75127224	-	RAMPAGE_only	3	3	22	1.698973	3.879664	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.909091
gastroesophageal_sphincter_female_adult_53_years	chr3	46606947	46606950	46606947	-	RAMPAGE_only	5	5	11	0.849487	2.721928	chr3	46606755	46606914	LTR|ERVL-MaLR|MLT1L	-	chr3	46518348	46580099	LRRC2|ENST00000296144.3	-	46518348,46521521,46527425,46529904,46532772,46539044,46545045,46551466,46579936	46519063,46521658,46527581,46530050,46532909,46539201,46545253,46551610,46580099	0.545455
gastroesophageal_sphincter_female_adult_53_years	chr10	95493263	95493288	95493263	-	RAMPAGE_only	3	3	8	0.617808	2.750000	chr10	95493013	95493319	SINE|Alu|AluSg	+	chr10	95311772	95441180	SORBS1|NM_001034954.1	-	95311772,95318319,95321962,95336520,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95394610,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95422189,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95337294,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95394673,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95422216,95432576,95434717,95437555,95441180	0.750000
gastroesophageal_sphincter_female_adult_53_years	chr2	110118141	110118147	110118146	-	RAMPAGE_only	9	12	16	1.235617	2.549255	chr2	110117625	110118184	LINE|L1|L1MD2	-	chr2	110083869	110116566	MALL|NM_005434.4	-	110083869,110087571,110091602,110115687	110085757,110087697,110091770,110116566	0.937500
gastroesophageal_sphincter_female_adult_53_years	chr11	77175291	77175303	77175302	+	High_confidence	17	21	38	2.934590	4.323732	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175304	77194474	STRG.26278.1	+	77175304,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194474	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr5	14653390	14653391	14653390	-	High_confidence	51	51	51	3.938529	4.134279	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr21	28048446	28048447	28048446	+	High_confidence	143	150	175	13.514560	4.280831	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.960000
gastroesophageal_sphincter_female_adult_53_years	chr11	64226142	64226180	64226158	-	High_confidence	84	90	439	33.902240	6.749984	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.954442
gastroesophageal_sphincter_female_adult_53_years	chr3	188885418	188885508	188885497	+	RAMPAGE_only	8	10	72	5.560276	5.128346	chr3	188885494	188885956	LINE|L1|L1PA3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr3	16228411	16228454	16228411	+	RAMPAGE_only	7	8	23	1.776199	3.594466	chr3	16228359	16228663	SINE|Alu|AluSx	+	chr3	16219399	16229745	GALNT15|ENST00000617544.3	+	16219399,16219909,16222614,16227353,16227444	16219534,16220014,16222758,16227443,16229745	0.913043
gastroesophageal_sphincter_female_adult_53_years	chr6	28354014	28354040	28354039	-	High_confidence	4	4	11	0.849487	3.277613	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329373	28354132	STRG.15294.5	-	28329373,28336789,28353861	28329778,28336943,28354132	0.636364
gastroesophageal_sphincter_female_adult_53_years	chr3	37058855	37058907	37058883	-	RAMPAGE_only	7	7	25	1.930651	3.720176	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.920000
gastroesophageal_sphincter_female_adult_53_years	chr5	176411458	176411459	176411458	-	RAMPAGE_only	8	10	12	0.926713	2.751629	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392641	176416261	CLTB|ENST00000508425.5	-	176392641,176397943,176410256,176416176	176392932,176398047,176410303,176416261	0.583333
gastroesophageal_sphincter_female_adult_53_years	chr5	997313	997331	997313	-	High_confidence	3	3	8	0.617808	2.521641	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.750000
gastroesophageal_sphincter_female_adult_53_years	chr19	3062922	3062983	3062922	-	High_confidence	34	40	218	16.835281	5.838030	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.981651
gastroesophageal_sphincter_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	344	409	1051	81.164587	6.364896	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.922931
gastroesophageal_sphincter_female_adult_53_years	chr9	111284874	111284875	111284874	-	High_confidence	17	18	18	1.390069	3.852169	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.888889
gastroesophageal_sphincter_female_adult_53_years	chr19	33395154	33395191	33395190	-	High_confidence	5	6	23	1.776199	3.447402	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	0.956522
gastroesophageal_sphincter_female_adult_53_years	chr3	11225885	11225906	11225885	-	High_confidence	6	9	18	1.390069	3.572469	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.500000
gastroesophageal_sphincter_female_adult_53_years	chr3	134485443	134485463	134485443	-	High_confidence	6	6	12	0.926713	2.792481	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr11	310043	310095	310060	+	RAMPAGE_only	3	3	13	1.003939	2.625815	chr11	309444	310164	LTR|ERV1|LTR30	-	chr11	308407	315272	IFITM2|ENST00000399815.2	+	308407,314921	308438,315272	0.615385
gastroesophageal_sphincter_female_adult_53_years	chr7	102822456	102822459	102822458	-	High_confidence	8	14	14	1.081165	2.950212	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813278	102822446	STRG.18730.1	-	102813278,102822039,102822382	102813531,102822203,102822446	0.928571
gastroesophageal_sphincter_female_adult_53_years	chr1	12572735	12572799	12572735	-	RAMPAGE_only	4	4	18	1.390069	3.392147	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr9	121313981	121314023	121314002	+	RAMPAGE_only	47	54	282	21.777749	5.366763	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.989362
gastroesophageal_sphincter_female_adult_53_years	chr3	139344537	139344548	139344547	+	High_confidence	23	23	60	4.633564	4.704949	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.916667
gastroesophageal_sphincter_female_adult_53_years	chr2	229232040	229232054	229232053	-	High_confidence	59	63	140	10.811648	6.028129	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.907143
gastroesophageal_sphincter_female_adult_53_years	chr8	143281669	143281687	143281669	-	High_confidence	13	13	38	2.934590	4.553652	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281690	MINCR|ENST00000518073.1	-	143280827,143281481	143280997,143281690	0.631579
gastroesophageal_sphincter_female_adult_53_years	chr4	2867835	2867851	2867850	+	High_confidence	4	4	10	0.772261	2.725481	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.900000
gastroesophageal_sphincter_female_adult_53_years	chr3	188877661	188877712	188877711	+	RAMPAGE_only	10	12	34	2.625686	4.513646	chr3	188877563	188877737	SINE|Alu|AluJr	+	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr2	227164620	227164621	227164620	+	High_confidence	11	11	15	1.158391	3.378783	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.933333
gastroesophageal_sphincter_female_adult_53_years	chr8	30508157	30508190	30508189	+	RAMPAGE_only	12	13	30	2.316782	4.215061	chr8	30507969	30508353	LTR|ERVL-MaLR|MLT1B	+	chr8	30479329	30547517	RBPMS|ENST00000522694.1	+	30479329,30504285,30544493,30545163,30547291	30479377,30504436,30544624,30545220,30547517	0.633333
gastroesophageal_sphincter_female_adult_53_years	chr5	52932080	52932134	52932133	+	High_confidence	7	7	34	2.625686	3.939829	chr5	52932180	52932352	DNA|hAT-Charlie|MER5A	+	chr5	52931151	52956491	ITGA1|ENST00000506275.1	+	52931151,52937400,52939589,52939839,52944942,52947344,52952406	52933996,52937514,52939691,52939944,52945035,52947461,52956491	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr10	72355145	72355146	72355145	-	High_confidence	9	9	12	0.926713	3.095795	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.916667
gastroesophageal_sphincter_female_adult_53_years	chr19	5680234	5680249	5680248	-	High_confidence	7	8	22	1.698973	3.484184	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.909091
gastroesophageal_sphincter_female_adult_53_years	chr3	188886243	188886525	188886304	+	RAMPAGE_only	73	76	901	69.580679	6.101563	chr3	188885956	188886311	LINE|L1|L1PA3	+	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.998890
gastroesophageal_sphincter_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	100	107	132	10.193840	5.869903	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158124603	158173037	STRG.12153.3	-	158124603,158130785,158155610,158170465,158172872	158127614,158131012,158155825,158171599,158173037	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr7	87040216	87040223	87040216	-	RAMPAGE_only	4	6	13	1.003939	2.931209	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.538462
gastroesophageal_sphincter_female_adult_53_years	chr11	70077956	70077961	70077960	+	High_confidence	4	6	11	0.849487	2.921928	chr11	70077921	70078008	LINE|L2|L2c	-	chr11	70078301	70189545	ANO1|NM_018043.5	+	70078301,70087751,70103065,70103998,70105733,70108352,70111706,70116457,70124349,70126060,70131918,70149709,70152449,70153056,70155910,70156946,70161160,70161621,70163282,70165469,70167241,70170886,70180003,70182501,70185589,70187737	70078714,70088084,70103164,70104150,70105788,70108404,70111762,70116499,70124414,70126195,70132079,70149792,70152461,70153128,70155988,70157021,70161362,70161733,70163340,70165570,70167387,70171039,70180056,70182686,70185695,70189545	0.909091
gastroesophageal_sphincter_female_adult_53_years	chr5	180909572	180909573	180909572	+	High_confidence	8	8	8	0.617808	2.750000	chr5	180909597	180909731	SINE|Alu|FLAM_C	+	chr5	180909572	180948353	BTNL8|ENST00000514448.5	+	180909572,180911338,180947511	180909697,180911614,180948353	0.875000
gastroesophageal_sphincter_female_adult_53_years	chr19	48868595	48868631	48868595	-	High_confidence	231	235	917	70.816296	7.306409	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837182	48868625	STRG.38924.2	-	48837182,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868625	0.993457
gastroesophageal_sphincter_female_adult_53_years	chr19	11539672	11539706	11539705	+	High_confidence	11	11	37	2.857364	4.260280	chr19	11539660	11539789	SINE|MIR|MIRb	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	0.864865
gastroesophageal_sphincter_female_adult_53_years	chr1	202582558	202582572	202582571	+	RAMPAGE_only	4	4	12	0.926713	2.913977	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.916667
gastroesophageal_sphincter_female_adult_53_years	chr6	43013392	43013393	43013392	-	High_confidence	21	21	27	2.085104	4.243856	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.925926
gastroesophageal_sphincter_female_adult_53_years	chr4	81154221	81154222	81154221	-	High_confidence	11	11	15	1.158391	3.506891	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr4	4269605	4269614	4269609	-	High_confidence	5	5	20	1.544521	3.050302	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.950000
gastroesophageal_sphincter_female_adult_53_years	chr3	188885572	188885669	188885668	+	RAMPAGE_only	4	4	33	2.548460	4.542748	chr3	188885494	188885956	LINE|L1|L1PA3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.939394
gastroesophageal_sphincter_female_adult_53_years	chr19	47779747	47779761	47779747	+	High_confidence	9	9	19	1.467295	2.575589	chr19	47779522	47779824	SINE|Alu|AluJo	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	1.000000
gastroesophageal_sphincter_female_adult_53_years	chr4	173369526	173369538	173369526	-	High_confidence	5	5	11	0.849487	3.277613	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.636364
gastroesophageal_sphincter_female_adult_53_years	chr1	176162936	176162957	176162936	-	RAMPAGE_only	6	7	12	0.926713	2.845351	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.666667
gastroesophageal_sphincter_female_adult_53_years	chr20	50130101	50130125	50130117	-	RAMPAGE_only	6	6	29	2.239556	4.208966	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.965517
gastroesophageal_sphincter_female_adult_53_years	chr10	95437815	95437820	95437815	-	RAMPAGE_only	5	5	10	0.772261	2.947703	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.700000
gastroesophageal_sphincter_female_adult_53_years	chr11	71745875	71745887	71745875	+	High_confidence	5	5	17	1.312843	3.625000	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.823529
gastroesophageal_sphincter_female_adult_53_years	chr4	79206686	79206695	79206694	+	RAMPAGE_only	6	6	10	0.772261	2.503258	chr4	79206338	79206927	LTR|ERV1|LTR10C	+	chr4	79197540	79308655	LINC01088|ENST00000512130.5	+	79197540,79306690,79308272	79197644,79306728,79308655	0.900000
gastroesophageal_sphincter_female_adult_53_years	chr12	643625	643636	643635	-	High_confidence	24	25	84	6.486989	4.225911	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.976190
gastroesophageal_sphincter_female_adult_53_years	chr7	107580245	107580267	107580245	+	High_confidence	717	719	3671	283.496861	6.906697	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.961863
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	49086453	49086547	49086520	+	RAMPAGE_only	7	12	46	2.059882	5.055958	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49085494	49108605	SNRNP70|ENST00000595231.5	+	49085494,49086404,49090290,49090465,49098426,49098641,49101389,49102113,49104633,49107624,49107821	49085636,49086561,49090353,49090520,49098491,49098704,49101471,49102185,49104735,49107712,49108605	0.956522
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	51352942	51352986	51352985	-	RAMPAGE_only	11	11	25	1.119501	3.859471	chr12	51352668	51352971	SINE|Alu|AluSq	-	chr12	51351246	51383563	GALNT6|ENST00000543196.6	-	51351246,51355805,51357348,51358129,51359131,51360720,51364120,51365429,51377194,51379290,51383460	51354492,51355958,51357450,51358261,51359332,51360838,51364355,51365579,51377367,51379884,51383563	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	65570509	65570540	65570521	+	High_confidence	17	22	42	1.880762	4.684184	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.523810
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	156252923	156252930	156252929	-	RAMPAGE_only	4	5	8	0.358240	2.521641	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156250032	156251380	SMG5|ENST00000476954.1	-	156250032,156250857	156250670,156251380	0.750000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	73144752	73144781	73144752	-	RAMPAGE_only	6	6	10	0.447800	2.721928	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	76669805	76669830	76669805	-	High_confidence	3	3	8	0.358240	2.521641	chr11	76669703	76669860	SINE|MIR|MIRb	-	chr11	76657523	76670000	LRRC32|NM_005512.2	-	76657523,76665870,76669761	76661508,76665958,76670000	0.500000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	68840707	68840787	68840769	+	RAMPAGE_only	6	6	55	2.462902	4.471847	chr12	68840533	68840806	SINE|Alu|AluSz	-	chr12	68809226	68844190	MSTRG.8784.28	+	68809226,68813553,68816811,68820324,68824362,68824554,68828770,68835828,68836671,68839273,68843933	68809292,68813628,68816945,68820374,68824430,68824651,68828931,68835984,68836749,68843832,68844190	0.981818
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	39021127	39021182	39021155	+	High_confidence	5	6	37	1.656862	4.457575	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.945946
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	179877288	179877303	179877288	-	High_confidence	2	3	10	0.447800	2.947703	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179865064	179877790	TOR1AIP2|ENST00000495650.1	-	179865064,179877692	179865854,179877790	0.500000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	73072182	73072234	73072233	-	High_confidence	5	5	18	0.806041	3.836592	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.666667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	57197106	57197110	57197109	+	RAMPAGE_only	7	8	18	0.806041	3.614369	chr3	57196989	57197284	SINE|Alu|AluYc	-	chr3	57227725	57278105	APPL1|ENST00000650354.1	+	57227725,57235565,57237491,57238044,57240464,57242100,57242855,57246075,57247394,57248192,57249359,57252268,57253681,57256956,57257245,57259027,57259844,57260116,57260627,57267741,57268397,57269540,57276303,57277792	57227937,57235664,57237551,57238116,57240552,57242142,57242914,57246222,57247477,57248351,57249548,57252311,57253738,57257051,57257428,57259080,57260019,57260153,57260774,57267792,57268487,57269751,57276459,57278105	0.777778
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	125650422	125650446	125650445	-	High_confidence	3	3	7	0.313460	2.807355	chr9	125649959	125650542	LINE|L2|L2b	+	chr9	125505943	125650461	MAPKAP1|ENST00000473837.5	-	125505943,125543058,125559632,125585554,125650363	125506417,125543168,125559809,125585727,125650461	0.714286
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	24817069	24817130	24817069	-	RAMPAGE_only	4	4	20	0.895601	3.646439	chr12	24816689	24817035	DNA|hAT-Charlie|MER1B	-	chr12	24814802	24902296	BCAT1|ENST00000538118.5	-	24814802,24829822,24832722,24836510,24842081,24849785,24878529,24881300,24894274,24901813,24901962	24818049,24829897,24832863,24836596,24842224,24849949,24878649,24881411,24894475,24901885,24902296	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	39019127	39019171	39019140	+	RAMPAGE_only	6	6	21	0.940381	3.576618	chr22	39019076	39019516	LTR|ERV1|MER65C	+	chr22	39014082	39020352	APOBEC3C|ENST00000361441.4	+	39014082,39015594,39017765,39018268	39014379,39015751,39018045,39020352	0.904762
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	119704559	119704565	119704559	-	RAMPAGE_only	4	4	13	0.582141	3.418296	chr12	119704528	119704734	DNA|hAT-Charlie|MER20	-	chr12	119688210	119784361	CIT|ENST00000537607.5	-	119688210,119690150,119697658,119697975,119700744,119701623,119701849,119704362,119708178,119710250,119710539,119712177,119712590,119713202,119713467,119714196,119718244,119718698,119720477,119721308,119728501,119730494,119734163,119735159,119742410,119752049,119757370,119758590,119760938,119767086,119770784,119772769,119775785,119776357,119776671,119782517,119783907,119784188	119688255,119690454,119697838,119698054,119700825,119701752,119701958,119704455,119708318,119710386,119710620,119712347,119712695,119713294,119713648,119714334,119718409,119718816,119720585,119721449,119728606,119730630,119734357,119735357,119742464,119752247,119757545,119758700,119761055,119767182,119770910,119772910,119775839,119776408,119776842,119782637,119784051,119784361	0.615385
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	21000939	21000957	21000939	-	RAMPAGE_only	8	8	14	0.626921	3.664498	chr17	21000780	21001059	SINE|Alu|AluSx	+	chr17	20999592	21043039	USP22|ENST00000261497.8	-	20999592,21004201,21004927,21006895,21007869,21011150,21012829,21015751,21017941,21019083,21021112,21028541,21042664	21003073,21004351,21004990,21006987,21007996,21011309,21012935,21015899,21018111,21019185,21021226,21028674,21043039	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	140697942	140697967	140697966	+	RAMPAGE_only	5	6	17	0.761261	2.983459	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140691682	140706676	MSTRG.30600.20	+	140691682,140693934,140694184,140695507,140695737,140696102,140696520,140696942,140697568,140697931,140698492,140700818,140702005,140703917,140704425,140705612	140691756,140694054,140694280,140695633,140695845,140696201,140696614,140697406,140697685,140698078,140700478,140700912,140702129,140703991,140704571,140706676	0.941176
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	186977489	186977514	186977513	+	RAMPAGE_only	19	19	55	2.462902	4.673288	chr1	186977440	186977516	LINE|L2|L2c	+	chr1	186828952	186988981	PLA2G4A|ENST00000367466.3	+	186828952,186854285,186870434,186893010,186894097,186906964,186911247,186932762,186939007,186939979,186946636,186946868,186950656,186956101,186965408,186977592,186979314,186988376	186829035,186854387,186870516,186893159,186894211,186907002,186911389,186932899,186939230,186940094,186946774,186946961,186950728,186956344,186965593,186977788,186979472,186988981	0.963636
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	99272909	99272910	99272909	+	High_confidence	8	8	11	0.492580	2.646439	chr7	99272913	99272966	LINE|L2|L2b	+	chr7	99273300	99297972	MYH16|NR_002147.2	+	99273300,99277538,99279509,99280875,99283564,99283872,99284844,99285381,99287891,99289286,99291322,99292311,99294017,99296700,99297659,99297891	99273423,99277712,99279737,99280980,99283651,99284018,99284935,99285438,99288137,99289404,99291450,99292508,99294150,99296917,99297796,99297972	0.909091
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	37426549	37426647	37426623	+	RAMPAGE_only	3	3	23	1.029941	3.621176	chr9	37426667	37426970	SINE|Alu|AluSx3	+	chr9	37427705	37436989	GRHPR|ENST00000497693.1	+	37427705,37436660	37432138,37436989	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	203711068	203711101	203711100	+	RAMPAGE_only	8	10	20	0.895601	3.884184	chr1	203711131	203711274	SINE|MIR|MIRc	+	chr1	203682808	203740319	ATP2B4|ENST00000341360.6	+	203682808,203698156,203699459,203700205,203700797,203702043,203703651,203707008,203707861,203709300,203710876,203711959,203713164,203714170,203720548,203721196,203722477,203723880,203727394,203733222,203739545	203683398,203698354,203699717,203700331,203700923,203702079,203703813,203707223,203708104,203709542,203711108,203712139,203713252,203714277,203720740,203721410,203722689,203723988,203727571,203733400,203740319	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	33301039	33301134	33301133	-	RAMPAGE_only	31	40	141	6.313986	5.021086	chr6	33301096	33301230	DNA|hAT-Charlie|Charlie1b	+	chr6	33299693	33314387	TAPBP|ENST00000434618.6	-	33299693,33303954,33304127,33304296,33304988,33313216,33313693,33314004	33301771,33303989,33304217,33304638,33305387,33313477,33313864,33314387	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	151166642	151166692	151166660	+	High_confidence	5	5	31	1.388181	4.148394	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	0.967742
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	75248150	75248151	75248150	-	High_confidence	17	19	22	0.985161	3.458525	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.772727
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	93504717	93504730	93504717	-	RAMPAGE_only	4	8	18	0.806041	3.454822	chr5	93504513	93504869	LTR|ERVL-MaLR|THE1A	-	chr5	93411017	93438737	NR2F1-AS1|ENST00000606188.1	-	93411017,93438702	93411509,93438737	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	159681340	159681431	159681340	-	RAMPAGE_only	6	6	47	2.104662	4.708132	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	0.978723
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	104280736	104280837	104280836	-	High_confidence	11	11	90	4.030204	5.848805	chr12	104280524	104280952	LTR|ERVL|MLT2D	+	chr12	104262313	104280722	AC089983.1|ENST00000549807.1	-	104262313,104280283	104262575,104280722	0.755556
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	122064375	122064376	122064375	+	RAMPAGE_only	9	9	9	0.403020	2.641604	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.555556
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	46350849	46350850	46350849	+	RAMPAGE_only	24	26	35	1.567302	3.899040	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.828571
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	11323556	11323570	11323569	-	RAMPAGE_only	10	12	21	0.940381	3.284184	chr19	11323311	11323610	SINE|Alu|AluSx1	+	chr19	11322045	11339668	RAB3D|NM_004283.3	-	11322045,11335446,11335664,11337171,11339468	11325585,11335571,11335783,11337460,11339668	0.952381
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr18	35466434	35466446	35466434	-	High_confidence	9	11	19	0.850821	3.836592	chr18	35466362	35466545	DNA|hAT-Charlie|MER5B	+	chr18	35443868	35466752	AC007998.3|ENST00000593122.5	-	35443868,35446874,35466623	35444022,35446955,35466752	0.526316
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	67067788	67067811	67067788	+	RAMPAGE_only	2	2	8	0.358240	3.000000	chr15	67067830	67067863	SINE|MIR|MIR3	+	chr15	67065856	67195195	SMAD3|NM_005902.3	+	67065856,67164894,67165252,67166778,67170553,67181240,67184726,67187364,67190412	67066360,67165088,67165384,67166853,67170604,67181453,67184864,67187509,67195195	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	22562052	22562071	22562052	+	RAMPAGE_only	8	8	16	0.716481	3.189898	chr7	22561901	22562080	DNA|hAT-Charlie|MER5A	+	chr7	22563336	22573996	AC002480.1|ENST00000435127.1	+	22563336,22564965,22571774,22572084	22563430,22565152,22572013,22573996	0.750000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	122728980	122729032	122729031	+	RAMPAGE_only	11	11	39	1.746422	4.523986	chr3	122729019	122729123	LINE|L2|L2c	+	chr3	122700525	122730825	MSTRG.26532.7	+	122700525,122703741,122704526,122708189,122713423,122713871,122714261,122718070,122718358,122720254,122728307	122701635,122703978,122704748,122708268,122713573,122713934,122714429,122718277,122718958,122727986,122730825	0.974359
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	134485387	134485490	134485387	-	High_confidence	9	11	81	3.627184	5.271059	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.950617
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	112506707	112506708	112506707	+	RAMPAGE_only	16	16	17	0.761261	3.750000	chr12	112506599	112506946	LTR|ERVL-MaLR|MLT1H	-	chr12	112418913	112509913	PTPN11|ENST00000351677.6	+	112418913,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486474,112488442,112489023,112502143,112504694,112505824	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504796,112509913	0.941176
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	82094007	82094039	82094031	+	RAMPAGE_only	8	8	38	1.701642	4.343598	chr15	82093781	82094459	DNA|TcMar-Tigger|Tigger7	+	chr15	82088632	82095707	LINC01583|ENST00000559788.1	+	82088632,82091726,82095481	82088728,82091935,82095707	0.552632
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	72627719	72627732	72627719	-	RAMPAGE_only	6	7	10	0.447800	2.921928	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.500000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	16981093	16981122	16981093	-	High_confidence	3	3	11	0.492580	2.845351	chr1	16980989	16981106	LINE|L2|L2b	+	chr1	16974501	16980835	MFAP2|ENST00000375535.3	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16980586	16975023,16975342,16975730,16976545,16976794,16976923,16977198,16978314,16980835	0.818182
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	140700445	140700452	140700445	+	High_confidence	525	780	1451	64.975844	5.077975	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.971744
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	75306541	75306559	75306541	-	High_confidence	2	2	8	0.358240	2.750000	chr16	75306534	75306719	SINE|MIR|MIRc	-	chr16	75293697	75306545	CFDP1|ENST00000570103.5	-	75293697,75305023,75306386	75294042,75305182,75306545	0.750000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	61578141	61578142	61578141	+	High_confidence	137	138	139	6.224426	6.158100	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.992806
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	39810023	39810099	39810033	-	High_confidence	39	39	92	4.119764	5.461708	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.521739
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	33301348	33301528	33301348	-	RAMPAGE_only	12	15	185	8.284308	5.824848	chr6	33301291	33301595	SINE|Alu|AluSx	+	chr6	33299693	33314387	TAPBP|ENST00000434618.6	-	33299693,33303954,33304127,33304296,33304988,33313216,33313693,33314004	33301771,33303989,33304217,33304638,33305387,33313477,33313864,33314387	0.994595
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	79446868	79446881	79446868	-	RAMPAGE_only	5	5	12	0.537361	3.084963	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	20658585	20658608	20658597	+	High_confidence	9	9	57	2.552463	4.859034	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658315	20770112	MSTRG.37425.2	+	20658315,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.631579
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	66651731	66651775	66651765	+	High_confidence	3	5	13	0.582141	3.251629	chr14	66649356	66652068	DNA|hAT-Charlie|Charlie3	+	chr14	66651753	67181723	MSTRG.11219.10	+	66651753,66681106,66776463,66824473,66879938,66916002,66922665,66924193,66965190,67023632,67058648,67088982,67100855,67110139,67111860,67113017,67122255,67143361,67159414,67165161,67168932,67179577,67180803	66651898,66681185,66776521,66824566,66880033,66916069,66922938,66924292,66965325,67023675,67058786,67089075,67100911,67110259,67111919,67113171,67122377,67143449,67159488,67165226,67169036,67179674,67181723	0.846154
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	32953738	32953756	32953755	-	RAMPAGE_only	4	6	11	0.492580	2.646439	chr10	32953663	32953796	SINE|MIR|MIRc	-	chr10	32928149	32955663	ITGB1|ENST00000480226.5	-	32928149,32929821,32932514,32935491,32955569	32928264,32930044,32932600,32935558,32955663	0.636364
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	210439448	210439451	210439450	+	High_confidence	6	11	16	0.716481	3.500000	chr1	210438946	210439615	LTR|ERVL|ERVL-B4-int	-	chr1	210439582	210676296	HHAT|ENST00000367009.2	+	210439582,210464504,210513152,210587897,210623525,210674287	210439753,210464655,210513188,210588099,210623670,210676296	0.937500
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	177499694	177499707	177499694	+	RAMPAGE_only	3	4	11	0.492580	3.459432	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177436983	177543836	MSTRG.21985.6	+	177436983,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177538073	177437054,177442235,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177543836	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	211369105	211369106	211369105	+	High_confidence	7	7	7	0.313460	2.521641	chr1	211369002	211369112	SINE|Alu|FLAM_A	-	chr1	211368928	211374785	TRAF5|ENST00000473385.1	+	211368928,211371301,211372127	211369592,211371470,211374785	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	21940680	21940685	21940680	-	High_confidence	8	8	16	0.716481	3.625000	chr22	21940485	21940733	LTR|ERVL-MaLR|MLT1C	+	chr22	21931265	21940657	PPM1F|ENST00000445205.1	-	21931265,21933390,21934023,21939531,21940574	21931291,21933579,21934226,21939680,21940657	0.687500
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	65437264	65437585	65437479	+	RAMPAGE_only	25	30	556	24.897704	5.359341	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65423637	65445556	MSTRG.6443.9	+	65423637,65424975,65437252	65424864,65437175,65445556	0.996403
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	155343321	155343324	155343321	-	RAMPAGE_only	11	12	20	0.895601	3.326360	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.850000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	96781064	96781065	96781064	-	RAMPAGE_only	7	9	9	0.403020	2.725481	chr5	96780967	96781034	SINE|MIR|MIR	-	chr5	96774483	96807909	ERAP1|ENST00000443439.6	-	96774483,96780422,96781057,96781692,96783050,96783923,96785787,96786469,96788530,96790295,96790511,96792060,96793399,96793802,96795041,96797174,96800861,96803402,96807859	96776551,96780504,96781198,96781854,96783235,96784080,96785971,96786549,96788685,96790367,96790643,96792192,96793513,96793957,96795162,96797309,96801000,96803943,96807909	0.555556
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	188109602	188109603	188109602	-	High_confidence	24	24	24	1.074721	4.251629	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188105412	188109603	TRIML2|ENST00000394461.2	-	188105412,188109242	188105587,188109603	0.708333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	127762417	127762431	127762430	-	High_confidence	11	12	31	1.388181	4.671781	chr9	127762302	127762854	LINE|L2|L2a	+	chr9	127738316	127762440	SH2D3C|NM_001142531.1	-	127738316,127739681,127740257,127741787,127742848,127744563,127747146,127749210,127751171,127761610,127762391	127738921,127739888,127740369,127741959,127742964,127745099,127747271,127749665,127751300,127761650,127762440	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	73078285	73078287	73078286	+	RAMPAGE_only	5	9	10	0.447800	2.503258	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.900000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	80369551	80369575	80369568	+	High_confidence	3	3	9	0.403020	2.750000	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.777778
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	64999443	64999444	64999443	-	High_confidence	10	10	11	0.492580	3.121928	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64971775	64999365	MSTRG.34098.1	-	64971775,64981386,64981983,64989946,64999120	64979536,64981482,64982116,64993414,64999365	0.636364
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	30354709	30354710	30354709	-	High_confidence	6	6	8	0.358240	2.807355	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.875000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	86938402	86938410	86938402	+	RAMPAGE_only	5	6	9	0.403020	3.000000	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86800520	86952788	PRSS23|ENST00000532234.5	+	86800520,86823376,86939019,86950355,86951215	86800651,86823593,86939126,86950499,86952788	0.666667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	46903267	46903342	46903337	-	RAMPAGE_only	24	26	109	4.881025	5.550910	chr2	46903002	46903353	LTR|ERVL-MaLR|THE1A	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	153967484	153967498	153967486	+	High_confidence	8	11	25	1.119501	3.653661	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.800000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	43452934	43452943	43452934	-	High_confidence	8	8	14	0.626921	3.324863	chr1	43452925	43453093	LINE|L2|L2c	+	chr1	43451159	43453909	HYI|ENST00000372427.5	-	43451159,43451427,43451647,43451797,43451934,43452204	43451311,43451544,43451717,43451847,43452013,43453909	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	99906553	99906573	99906553	-	High_confidence	5	5	27	1.209061	4.102679	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	69051410	69051510	69051430	+	High_confidence	16	23	77	3.448063	4.857262	chr4	69051337	69051715	LTR|ERV1|Harlequin-int	+	chr4	69051475	69112572	UGT2B7|ENST00000509763.1	+	69051475,69089471,69098539,69102806,69107174,69112456	69051602,69089603,69098688,69102938,69107262,69112572	0.571429
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	48979485	48979509	48979508	+	RAMPAGE_only	3	4	9	0.403020	3.000000	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	38697887	38697888	38697887	+	RAMPAGE_only	5	5	8	0.358240	2.521641	chr4	38697912	38698147	DNA|TcMar-Tigger|Tigger19b	+	chr4	38664196	38701042	MSTRG.27876.2	+	38664196,38680586,38687962,38689728,38694745,38697081	38664461,38680682,38689071,38689879,38694906,38701042	0.875000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	28354199	28354206	28354205	-	High_confidence	33	33	72	3.224163	5.434580	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28326774	28354204	MSTRG.31631.11	-	28326774,28327382,28329302,28336789,28353861	28326854,28327533,28329714,28336943,28354204	0.513889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	17556508	17556556	17556545	+	High_confidence	11	11	34	1.522521	4.373796	chr19	17556574	17556631	SINE|MIR|MIR	+	chr19	17556560	17568577	COLGALT1|ENST00000600474.1	+	17556560,17559310,17560347,17567405,17568508	17556679,17559421,17560465,17567540,17568577	0.852941
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	81192644	81192655	81192644	-	RAMPAGE_only	3	3	8	0.358240	2.750000	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	55866822	55867171	55866822	-	RAMPAGE_only	56	63	541	24.226004	6.456898	chr2	55866767	55866844	DNA|hAT-Ac|OldhAT1	+	chr2	55866611	55923776	EFEMP1|ENST00000635671.1	-	55866611,55870719,55870999,55874945,55881611,55917664,55918218,55922359,55923710	55867234,55870915,55871123,55875065,55881734,55918084,55918267,55922447,55923776	0.706100
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	166850274	166850342	166850293	+	RAMPAGE_only	5	5	17	0.761261	3.690117	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	58306141	58306159	58306141	+	High_confidence	3	4	10	0.447800	2.725481	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58312462	ERVK3-1|ENST00000609864.5	+	58305376,58306087,58312020,58312165	58305445,58306216,58312061,58312462	0.500000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	21227168	21227206	21227192	-	RAMPAGE_only	18	19	72	3.224163	5.405765	chr1	21227023	21227146	SINE|Alu|AluJr4	-	chr1	21219813	21222081	ECE1|ENST00000531334.1	-	21219813,21221746	21220131,21222081	0.527778
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	108022728	108022748	108022747	+	RAMPAGE_only	3	3	7	0.313460	2.521641	chrX	108022697	108023112	LTR|ERVL-MaLR|MSTB1	+	chrX	108044969	108079184	VSIG1|ENST00000415430.7	+	108044969,108058037,108061427,108066935,108072676,108073249,108076076,108077047	108045179,108058201,108061535,108067134,108072832,108073369,108076218,108079184	0.857143
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	63625065	63625109	63625068	-	RAMPAGE_only	18	18	58	2.597243	5.094797	chr11	63624954	63625088	DNA|hAT-Charlie|MER5A	+	chr11	63624086	63671612	ATL3|ENST00000398868.7	-	63624086,63631039,63633025,63635533,63636206,63643356,63644168,63646506,63651935,63652470,63658760,63659037,63671289	63629405,63631471,63633097,63635590,63636334,63643495,63644261,63646563,63651986,63652575,63658904,63659252,63671612	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	57274842	57274878	57274842	+	RAMPAGE_only	2	3	16	0.716481	3.202820	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.687500
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	208023745	208023796	208023745	-	RAMPAGE_only	9	11	36	1.612082	4.314973	chr1	208023741	208023855	LINE|L2|L2a	+	chr1	208022241	208244320	PLXNA2|ENST00000367033.3	-	208022241,208028008,208028829,208031589,208033318,208034492,208038370,208038824,208039620,208039991,208042097,208043060,208044507,208045066,208045877,208051008,208051255,208052326,208054420,208060685,208079259,208082411,208084379,208092785,208096028,208096729,208098845,208103146,208142328,208210279,208216734,208243642	208027338,208028159,208029042,208031759,208033509,208034592,208038474,208038984,208039767,208040058,208042366,208043203,208044742,208045210,208046117,208051102,208051423,208052463,208054538,208060837,208079450,208082508,208084580,208092900,208096125,208096883,208098969,208103247,208142463,208210462,208218002,208244320	0.944444
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	50230995	50230996	50230995	+	High_confidence	17	17	17	0.761261	3.852169	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	100292177	100292178	100292177	-	RAMPAGE_only	14	14	15	0.671701	3.467720	chr14	100292011	100292186	SINE|MIR|MIRb	-	chr14	100291685	100295734	SLC25A29|ENST00000556505.5	-	100291685,100293293,100295625	100293032,100293377,100295734	0.533333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	77127872	77127877	77127872	+	High_confidence	3950	4042	6695	299.802395	7.920054	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.659895
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	54413443	54413493	54413479	-	High_confidence	7	9	38	1.701642	4.371178	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54243236	54413479	SSBP3|ENST00000525990.1	-	54243236,54251615,54251793,54257126,54281437,54401860,54404575,54404857,54413355	54243299,54251692,54251860,54257186,54281527,54401945,54404637,54404930,54413479	0.526316
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	130049798	130049810	130049808	+	RAMPAGE_only	3	4	8	0.358240	2.750000	chr6	130049727	130050071	LINE|L2|L2-1_AMi	+	chr6	130020556	130141439	L3MBTL3|ENST00000368136.2	+	130020556,130022226,130042684,130049281,130049755,130051248,130052858,130055170,130057405,130060035,130066352,130068329,130070975,130078557,130083619,130086139,130092744,130094264,130104425,130120878,130133451,130133842,130139609	130020668,130022305,130042801,130049393,130049830,130051408,130052991,130055255,130057497,130060140,130066488,130068421,130071127,130078634,130083705,130086250,130092859,130094367,130104575,130120958,130133621,130133905,130141439	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	150568883	150568884	150568883	+	RAMPAGE_only	5	5	8	0.358240	2.500000	chr7	150568656	150569739	LINE|L2|L2b	-	chr7	150567389	150572938	GIMAP4|ENST00000494750.1	+	150567389,150572128	150567437,150572938	0.750000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	123570939	123570952	123570951	-	RAMPAGE_only	5	7	12	0.537361	3.095795	chr7	123570900	123571001	SINE|MIR|MIRc	+	chr7	123541028	123558255	NDUFA5|ENST00000355749.6	-	123541028,123545610,123550469,123557403,123557774	123542220,123545676,123550586,123557448,123558255	0.916667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	20685281	20685330	20685285	-	High_confidence	10	10	68	3.045043	5.535849	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20664013	20685283	MSTRG.447.1	-	20664013,20666213,20670420,20671937,20682652,20685251	20664762,20666331,20670488,20672196,20682884,20685283	0.867647
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	110496232	110496274	110496257	-	High_confidence	10	10	33	1.477741	4.680758	chr10	110496171	110496447	LINE|L2|L2b	+	chr10	110475103	110496204	AL355512.1|ENST00000607952.1	-	110475103,110496118	110475226,110496204	0.575758
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	85626378	85626434	85626399	+	RAMPAGE_only	3	4	15	0.671701	3.664498	chr14	85626237	85626418	SINE|tRNA-RTE|MamSINE1	-	chr14	85530227	85645751	MSTRG.11552.4	+	85530227,85621138	85533993,85645751	0.933333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	42377721	42377741	42377721	+	RAMPAGE_only	10	10	37	1.656862	3.756090	chr19	42377506	42377802	SINE|Alu|AluSx4	+	chr19	42359095	42378763	MSTRG.19351.7	+	42359095,42360774,42362089,42362383,42363047,42368454,42368842,42369530,42370188,42370700,42371349,42376250	42359242,42361006,42362213,42362597,42363262,42368662,42369002,42369723,42370359,42370831,42371482,42378763	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	209651135	209651167	209651135	-	High_confidence	17	18	55	2.462902	5.020009	chr1	209651125	209651277	SINE|MIR|MIR3	+	chr1	209614869	209651334	LAMB3|NM_001017402.1	-	209614869,209616470,209617409,209617906,209618451,209622535,209622981,209623504,209623839,209625647,209626866,209627382,209628034,209629736,209630614,209632582,209633069,209634446,209637907,209638533,209649963,209650916	209615407,209616624,209617586,209618048,209618659,209622680,209623179,209623725,209624000,209626026,209626978,209627579,209628190,209629925,209630735,209632776,209633133,209634638,209637981,209638648,209650118,209651334	0.981818
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	4129115	4129136	4129115	+	RAMPAGE_only	2	2	10	0.447800	2.641604	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.900000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	45570787	45570818	45570817	-	RAMPAGE_only	3	3	7	0.313460	2.807355	chr2	45570498	45572307	LINE|L1|L1M4	+	chr2	45546731	45568021	SRBD1|ENST00000493649.1	-	45546731,45547521,45551124,45553622,45562652,45567935	45546839,45547612,45551282,45553730,45562756,45568021	0.714286
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	65441381	65441440	65441382	+	RAMPAGE_only	44	65	131	5.866186	4.835376	chr11	65441331	65441464	SINE|Alu|AluJo	-	chr11	65423637	65445556	MSTRG.6443.9	+	65423637,65424975,65437252	65424864,65437175,65445556	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	8310341	8310342	8310341	+	High_confidence	8	8	8	0.358240	2.750000	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310282	8322516	ARHGEF15|ENST00000361926.7	+	8310282,8311990,8312921,8313500,8314905,8315065,8315413,8315754,8316018,8318386,8318569,8318749,8319006,8319311,8319498,8320841	8310343,8312640,8313254,8313555,8314964,8315277,8315574,8315907,8316148,8318461,8318662,8318910,8319159,8319394,8319603,8322516	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	143558019	143558020	143558019	+	High_confidence	20	21	21	0.940381	3.721928	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.904762
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	58306086	58306087	58306086	+	High_confidence	12	12	16	0.716481	3.373557	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58312462	ERVK3-1|ENST00000609864.5	+	58305376,58306087,58312020,58312165	58305445,58306216,58312061,58312462	0.500000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	13419689	13419734	13419733	-	RAMPAGE_only	3	3	14	0.626921	2.753434	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.857143
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	43286727	43286773	43286772	+	High_confidence	3	3	10	0.447800	2.947703	chr3	43286716	43287040	LINE|L1|L1M4b	+	chr3	43286585	43348753	MSTRG.25643.4	+	43286585,43287048,43289739,43299753,43303097,43332168,43340286,43343343,43347338	43286822,43289213,43289789,43299815,43303792,43332310,43340499,43343478,43348753	0.900000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr13	52661512	52661558	52661557	+	RAMPAGE_only	9	10	26	1.164281	3.603856	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	0.923077
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	85626309	85626334	85626321	+	RAMPAGE_only	6	7	24	1.074721	3.697846	chr14	85626237	85626418	SINE|tRNA-RTE|MamSINE1	-	chr14	85530227	85645751	MSTRG.11552.4	+	85530227,85621138	85533993,85645751	0.916667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	26512114	26512153	26512121	-	High_confidence	4	4	14	0.626921	3.182006	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	77088097	77088109	77088108	+	High_confidence	10	14	25	1.119501	4.022055	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088008	77142094	ZBED3-AS1|ENST00000646594.1	+	77088008,77088744,77089345,77098654,77118319,77139260	77088472,77088799,77089403,77098747,77118521,77142094	0.600000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	20151624	20151666	20151665	-	RAMPAGE_only	3	3	10	0.447800	2.721928	chrX	20151603	20151715	DNA|TcMar-Tigger|Tigger12A	-	chrX	20149910	20266632	RPS6KA3|NM_004586.2	-	20149910,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20234757,20266563	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20234814,20266632	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	67920076	67920096	67920095	+	High_confidence	5	6	12	0.537361	3.459432	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	0.833333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	65053822	65053855	65053822	-	RAMPAGE_only	11	14	31	1.388181	2.758914	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.967742
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	65430042	65430130	65430042	+	RAMPAGE_only	11	11	77	3.448063	4.713039	chr11	65430027	65430148	SINE|MIR|MIRb	+	chr11	65423637	65445556	MSTRG.6443.9	+	65423637,65424975,65437252	65424864,65437175,65445556	0.974026
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	179877353	179877359	179877353	-	High_confidence	3	5	11	0.492580	3.121928	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179839966	179877799	TOR1AIP2|ENST00000367612.7	-	179839966,179847534,179850844,179852631,179877238,179877692	179846828,179847636,179851363,179852811,179877373,179877799	0.545455
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	151766780	151766781	151766780	+	High_confidence	216	262	273	12.224952	6.423341	chr3	151766184	151766973	LINE|L1|L1MC3	-	chr3	151766790	151784894	MSTRG.26956.3	+	151766790,151770507,151776803,151783831	151766854,151770611,151776975,151784894	0.706960
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	38687059	38687064	38687063	-	RAMPAGE_only	3	3	11	0.492580	3.121928	chr22	38687038	38687336	SINE|Alu|AluSp	+	chr22	38685542	38700454	JOSD1|NM_014876.5	-	38685542,38688934,38689295,38699802	38688001,38689129,38689424,38700454	0.909091
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr13	106561994	106562045	106562018	-	High_confidence	3	3	15	0.671701	3.664498	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.866667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	49640674	49640704	49640686	-	RAMPAGE_only	3	3	11	0.492580	2.846439	chr12	49640553	49640743	SINE|MIR|MIRb	+	chr12	49636498	49707220	MSTRG.8344.1	-	49636498,49641196,49646638,49646885,49647275,49647702,49648192,49649028,49649258,49649469,49649690,49650675,49651167,49651381,49651932,49653225,49653724,49654191,49654909,49656403,49656822,49657081,49658441,49661965,49665831,49666126,49668470,49707054	49641151,49645903,49646753,49647009,49647368,49647804,49648353,49649158,49649339,49649538,49649925,49650878,49651292,49651450,49652212,49653327,49653874,49654302,49654984,49656497,49656899,49657190,49658594,49662049,49665908,49666207,49668554,49707220	0.909091
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	123061165	123061323	123061296	-	High_confidence	185	185	844	37.794357	6.552673	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.986967
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	157533600	157533605	157533600	-	High_confidence	1435	1516	2167	97.038355	7.017324	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157381272	157533606	MSTRG.27032.6	-	157381272,157413880,157428321,157460180,157470313,157493186,157495211,157505277,157533512	157381376,157414090,157428488,157460355,157470529,157493293,157495506,157505409,157533606	0.936779
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	18063186	18063216	18063215	-	High_confidence	6	7	24	1.074721	4.105389	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	34650850	34650888	34650857	-	RAMPAGE_only	5	6	19	0.850821	3.221097	chr14	34650761	34650903	LTR|ERVL-MaLR|MLT1J2	+	chr14	34562408	34630183	SNX6|ENST00000362031.8	-	34562408,34567685,34567853,34575755,34581560,34586229,34593044,34597549,34603347,34605595,34608029,34609637,34629906,34630110	34563175,34567771,34568013,34575842,34581600,34586305,34593150,34597645,34603471,34605717,34608140,34609742,34629954,34630183	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	65438928	65439100	65438928	+	RAMPAGE_only	14	14	79	3.537623	4.923614	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65423637	65445556	MSTRG.6443.9	+	65423637,65424975,65437252	65424864,65437175,65445556	0.949367
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	72111411	72111497	72111496	-	High_confidence	6	9	41	1.835982	4.784184	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72108817	72111497	ANAPC15|ENST00000538117.5	-	72108817,72109228,72110087,72110543,72111156,72111411	72108875,72109341,72110225,72110603,72111281,72111497	0.560976
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	26366319	26366396	26366395	+	RAMPAGE_only	11	11	68	3.045043	4.119956	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	108126982	108126983	108126982	+	High_confidence	5	5	7	0.313460	2.521641	chrX	108127028	108127188	SINE|MIR|MIR3	+	chrX	108126076	108151858	ATG4A|ENST00000394892.2	+	108126076,108131259,108134056,108134338,108137090,108137803,108138112,108150151,108151801	108126187,108131358,108134158,108134411,108137170,108137991,108138191,108150297,108151858	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	62600169	62600174	62600173	-	High_confidence	3	4	8	0.358240	2.500000	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr20	22684854	22684885	22684868	-	High_confidence	3	3	19	0.850821	3.576618	chr20	22684814	22685087	LTR|ERVL|LTR16C	-	chr20	22676071	22684878	LINC01747|ENST00000441568.1	-	22676071,22684744	22678257,22684878	0.947368
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	10710653	10710654	10710653	-	High_confidence	34	34	34	1.522521	3.620572	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.764706
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	96917842	96917859	96917858	+	RAMPAGE_only	7	9	20	0.895601	3.521928	chr5	96917624	96917934	SINE|Alu|AluY	+	chr5	96876505	96919716	MSTRG.30079.4	+	96876505,96879563,96883791,96889184,96892298,96895245,96896372,96896731,96900120,96901505,96902273,96903376,96908960,96909579,96912636,96913316,96915687,96917461,96918652	96876527,96880260,96883930,96889305,96892453,96895359,96896504,96896863,96900189,96901681,96902353,96903560,96909117,96909764,96912798,96913457,96915769,96918501,96919716	0.950000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	75262682	75262822	75262738	-	High_confidence	9	9	60	2.686803	4.710536	chr11	75262587	75262812	SINE|MIR|MIRc	-	chr11	75260128	75262466	AP001972.5|ENST00000624624.1	-	75260128	75262466	0.816667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr13	36532139	36532151	36532139	+	High_confidence	10	11	16	0.716481	2.727217	chr13	36532028	36532249	SINE|MIR|MIR	+	chr13	36532127	36591540	MSTRG.9818.1	+	36532127,36577227,36591470	36532392,36577340,36591540	0.875000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	37829397	37829398	37829397	-	High_confidence	13	13	14	0.626921	2.661226	chr2	37829373	37829510	LTR|ERVL|LTR79	-	chr2	37826246	37829432	LINC00211|ENST00000413792.5	-	37826246,37828932,37829247	37827878,37829038,37829432	0.928571
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	71781493	71781503	71781501	+	RAMPAGE_only	4	5	11	0.492580	3.121928	chr15	71781091	71781809	LINE|CR1|L3	+	chr15	71547281	71783279	THSD4|ENST00000261862.7	+	71547281,71660529,71780541,71780547	71547481,71660726,71780545,71783279	0.909091
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	3062922	3062978	3062924	-	High_confidence	10	18	83	3.716744	5.174226	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.939759
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	99272858	99272871	99272870	+	High_confidence	5	5	21	0.940381	3.558519	chr7	99272913	99272966	LINE|L2|L2b	+	chr7	99273300	99297972	MYH16|NR_002147.2	+	99273300,99277538,99279509,99280875,99283564,99283872,99284844,99285381,99287891,99289286,99291322,99292311,99294017,99296700,99297659,99297891	99273423,99277712,99279737,99280980,99283651,99284018,99284935,99285438,99288137,99289404,99291450,99292508,99294150,99296917,99297796,99297972	0.904762
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	183452130	183452151	183452150	+	RAMPAGE_only	3	4	8	0.358240	2.521641	chr3	183452059	183452354	SINE|Alu|AluSz6	-	chr3	183453642	183455541	LINC00888|ENST00000482098.1	+	183453642,183455198	183454093,183455541	0.500000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	121313981	121314021	121314020	+	RAMPAGE_only	9	9	52	2.328562	4.312347	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	127522793	127522819	127522802	-	RAMPAGE_only	6	6	27	1.209061	4.356558	chr9	127522529	127523072	LINE|L2|L2a	+	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	128185561	128185578	128185577	-	RAMPAGE_only	4	5	11	0.492580	2.921928	chr9	128185400	128185541	SINE|MIR|MIR3	-	chr9	128166151	128190710	CIZ1|ENST00000415526.5	-	128166151,128166758,128167094,128169051,128169405,128170019,128176350,128177565,128178368,128178708,128180414,128180720,128185546,128190328,128190687	128166406,128166880,128167164,128169201,128169519,128170107,128176475,128177763,128178490,128179415,128180523,128180799,128185776,128190444,128190710	0.909091
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	93145898	93145986	93145942	-	RAMPAGE_only	2	2	18	0.806041	3.734522	chr7	93145828	93146581	LINE|L2|L2a	+	chr7	93135762	93148345	SAMD9L|ENST00000446033.1	-	93135762,93144731,93145384,93147087,93148193	93135991,93144833,93146040,93147146,93148345	0.777778
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	58578103	58578104	58578103	+	RAMPAGE_only	6	6	6	0.268680	2.584963	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58579110	58621042	ZFP91|ENST00000316059.6	+	58579110,58584855,58609829,58610297,58610949,58611603,58612277,58612761,58614228,58616715,58617195	58579622,58584884,58610039,58610334,58611054,58611738,58612328,58612840,58614343,58616815,58621042	0.833333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr18	48621508	48621539	48621508	+	RAMPAGE_only	3	3	19	0.850821	3.642150	chr18	48621468	48621857	LINE|L2|L2a	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	0.842105
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	71999605	71999627	71999614	+	High_confidence	3	7	12	0.537361	3.027169	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.916667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	15085638	15085640	15085638	-	RAMPAGE_only	3	5	7	0.313460	2.521641	chr16	15085367	15085615	SINE|Alu|AluJr	-	chr16	15074676	15083750	RRN3|ENST00000561685.1	-	15074676,15076557,15079997,15083512	15074861,15076650,15080096,15083750	0.571429
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	154409569	154409592	154409591	+	RAMPAGE_only	13	17	42	1.880762	3.955067	chr5	154409601	154409687	LINE|L1|L1PREC2	+	chr5	154403776	154419033	GALNT10|ENST00000517958.1	+	154403776,154409540,154412888,154415782,154416813	154404216,154409762,154413005,154415932,154419033	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	126554141	126554142	126554141	-	RAMPAGE_only	5	5	7	0.313460	2.584963	chr8	126554033	126554306	SINE|Alu|AluSx1	-	chr8	126552441	126558393	FAM84B|ENST00000304916.3	-	126552441,126558033	126557485,126558393	0.857143
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	71423270	71423277	71423274	+	RAMPAGE_only	6	7	22	0.985161	4.021928	chr2	71423244	71423287	DNA|hAT-Ac|OldhAT1	+	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.909091
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	4678115	4678214	4678146	-	High_confidence	90	93	651	29.151809	6.577603	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4635469	4678154	MSTRG.3787.1	-	4635469,4648739,4657600,4659452,4678048	4635782,4651203,4657725,4659680,4678154	0.734255
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	80485582	80485619	80485592	+	High_confidence	11	13	39	1.746422	4.701746	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.538462
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	17282904	17282936	17282904	+	RAMPAGE_only	5	6	18	0.806041	3.969816	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.666667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	41456397	41456421	41456420	-	RAMPAGE_only	6	9	16	0.716481	3.456565	chr19	41456224	41456813	LTR|ERV1|LTR49-int	-	chr19	41454168	41500644	PCAT19|ENST00000588495.5	-	41454168,41479080,41494539,41500583	41456487,41479284,41495427,41500644	0.937500
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	55982757	55982800	55982799	-	High_confidence	4	7	37	1.656862	4.231746	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.972973
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	41871712	41871820	41871799	-	RAMPAGE_only	8	8	76	3.403283	5.413926	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.578947
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	50226714	50226753	50226714	+	High_confidence	8	8	18	0.806041	3.614369	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	2798807	2798810	2798807	+	High_confidence	4	6	11	0.492580	2.721928	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.636364
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	3111607	3111679	3111607	+	RAMPAGE_only	6	6	30	1.343401	4.280226	chr4	3111496	3112202	LINE|L1|HAL1	-	chr4	3115328	3121712	HTT|ENST00000506137.1	+	3115328,3116084,3121227	3115445,3116263,3121712	0.800000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	149519832	149519867	149519832	-	RAMPAGE_only	3	3	11	0.492580	2.646439	chr3	149519659	149519977	SINE|Alu|AluSq2	+	chr3	149517234	149658025	WWTR1|NM_001168280.1	-	149517234,149526012,149527835,149542334,149572863,149656875,149657824	149520989,149526125,149527969,149542537,149573000,149657309,149658025	0.909091
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	50756741	50756798	50756741	-	RAMPAGE_only	5	6	45	2.015102	4.726144	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	118651542	118651605	118651592	-	High_confidence	20	20	120	5.373605	5.954359	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.966667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	118835953	118835954	118835953	-	High_confidence	10	10	15	0.671701	3.093069	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.933333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr13	27445094	27445142	27445141	-	RAMPAGE_only	10	11	22	0.985161	4.095795	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	131503951	131504402	131504040	-	RAMPAGE_only	25	43	528	23.643863	6.071334	chr7	131503890	131504051	SINE|MIR|MIR3	+	chr7	131500261	131556563	PODXL|ENST00000446198.5	-	131500261,131505867,131506259,131506578,131508950,131510827,131556259	131504508,131506035,131506321,131506726,131509585,131511433,131556563	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	9716967	9717023	9717016	+	RAMPAGE_only	5	5	21	0.940381	3.725651	chr11	9716634	9717133	LINE|L2|L2	-	chr11	9720065	9752991	MSTRG.5790.6	+	9720065,9724657,9728052,9729342,9732528,9738212,9740180,9747857,9749086,9749863	9720483,9724885,9728199,9729451,9732710,9738320,9740347,9748056,9749183,9752991	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	83096150	83096174	83096150	+	RAMPAGE_only	13	14	41	1.835982	4.934184	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	0.926829
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	46731724	46731725	46731724	-	High_confidence	9	9	14	0.626921	3.235926	chr19	46731643	46732623	LINE|L2|L2a	+	chr19	46728684	46731788	STRN4|ENST00000596016.5	-	46728684,46730731,46731467	46728777,46730873,46731788	0.857143
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	50756649	50756694	50756649	-	RAMPAGE_only	3	3	11	0.492580	3.095795	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	109852114	109852144	109852114	-	RAMPAGE_only	2	2	9	0.403020	2.947703	chr12	109851848	109852148	SINE|Alu|AluSq2	-	chr12	109850942	109880488	GLTP|NM_016433.3	-	109850942,109855618,109857525,109858682,109880271	109852737,109855769,109857659,109858741,109880488	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	21218750	21219516	21218791	-	RAMPAGE_only	26	26	710	31.793831	7.248539	chr1	21218585	21218890	SINE|Alu|AluSx1	-	chr1	21218583	21279549	ECE1|ENST00000357071.8	-	21218583,21221746,21225249,21227158,21227930,21233557,21235849,21236745,21238133,21244988,21247220,21255946,21257524,21258692,21260270,21272698,21279190	21220131,21221842,21225440,21227226,21228041,21233661,21235927,21236844,21238244,21245103,21247363,21256138,21257590,21258839,21260392,21272911,21279549	0.553521
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	90467501	90467534	90467510	+	RAMPAGE_only	6	10	37	1.656862	4.648956	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90388260	90500371	IQGAP1|ENST00000560738.1	+	90388260,90390773,90466046,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390824,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500371	0.972973
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	59651207	59651287	59651210	+	RAMPAGE_only	10	18	76	3.403283	5.019190	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.960526
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	94234072	94234120	94234109	+	RAMPAGE_only	2	2	8	0.358240	2.750000	chr4	94234038	94234182	SINE|MIR|MIR3	-	chr4	94208083	94289899	SMARCAD1|ENST00000394961.6	+	94208083,94208345,94213034,94226118,94233953,94236951,94240905,94249653,94250751,94252615,94264706,94270727,94273616,94274737,94274889,94276338,94277021,94278421,94278615,94278922,94280591,94281471,94283120,94284959,94289472	94208242,94208584,94213152,94226296,94234122,94237018,94241006,94249755,94250833,94253007,94264906,94270818,94273716,94274797,94274965,94276474,94277159,94278517,94278733,94279050,94280780,94281590,94283303,94285069,94289899	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	33864010	33864091	33864081	+	RAMPAGE_only	7	9	67	3.000263	4.665366	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.985075
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	49739005	49739042	49739005	+	High_confidence	14	14	53	2.373342	4.808504	chr12	49735987	49739725	LTR|ERV1|Harlequin-int	+	chr12	49738992	49758483	TMBIM6|ENST00000546796.5	+	49738992,49752463,49752972,49755634,49758226,49758382	49739082,49752549,49753081,49755755,49758275,49758483	0.716981
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	28524764	28524806	28524789	-	RAMPAGE_only	14	15	36	1.612082	3.940351	chr10	28523760	28525077	LINE|L1|L1M4	-	chr10	28519916	28532354	WAC-AS1|NR_033805.1	-	28519916,28525947,28531734	28524611,28526008,28532354	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	25458309	25458335	25458334	+	High_confidence	42	45	83	3.716744	5.816431	chr3	25458211	25458428	LINE|L1|L1ME4a	+	chr3	25458309	25597932	RARB|NM_001290217.1	+	25458309,25461192,25501181,25569757,25580545,25593502,25594519,25596419	25458393,25461341,25501323,25569918,25580722,25593707,25594678,25597932	0.759036
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	571725	571771	571754	-	High_confidence	5	13	42	1.880762	4.487556	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.904762
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr18	7946867	7946888	7946878	+	High_confidence	54	54	137	6.134866	5.625063	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.795620
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr20	56367400	56367531	56367400	+	RAMPAGE_only	23	23	113	5.060145	5.110776	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	0.982301
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	80180941	80180960	80180941	-	RAMPAGE_only	3	3	7	0.313460	2.521641	chr10	80180757	80181106	LTR|ERVL-MaLR|MSTD	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	0.714286
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	108686128	108686272	108686232	+	RAMPAGE_only	30	32	138	6.179646	5.515063	chr2	108686044	108686338	SINE|Alu|AluY	+	chr2	108654811	108687246	LIMS1|NM_001193485.2	+	108654811,108659604,108670780,108672324,108672879,108675877,108676605,108677978,108680694,108683884	108655256,108659764,108670847,108672445,108673029,108676028,108676698,108678027,108680770,108687246	0.992754
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	5768224	5768381	5768380	-	RAMPAGE_only	19	20	110	4.925805	5.773234	chr10	5768371	5769005	LINE|L1|L1MB3	+	chr10	5765228	5769389	GDI2|ENST00000479928.1	-	5765228,5766240,5768212	5766152,5766638,5769389	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr18	9117589	9117610	9117609	+	RAMPAGE_only	5	5	9	0.403020	2.500000	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	154928500	154928504	154928503	+	High_confidence	14	14	25	1.119501	4.088779	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.840000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	99893444	99893487	99893444	-	High_confidence	7	7	32	1.432961	4.106891	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.937500
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	182873997	182874000	182873999	+	High_confidence	14	21	30	1.343401	3.438432	chr3	182874046	182874599	DNA|hAT-Charlie|Cheshire	+	chr3	182873965	182919063	ATP11B|ENST00000466758.5	+	182873965,182879495,182880878,182884752,182885950,182887585,182889409,182896699,182897302,182898606,182902480,182908458,182913860,182918022	182874015,182879649,182880947,182884898,182886010,182887713,182889548,182896765,182897406,182898772,182902566,182908505,182913994,182919063	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	34588448	34588453	34588448	-	RAMPAGE_only	4	4	14	0.626921	3.182006	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34379067	34583651	MSTRG.12037.1	-	34379067,34381700,34381967,34382150,34382385,34382796,34383440,34383745,34383960,34385047,34385253,34385426,34385739,34386624,34389643,34391122,34391352,34398633,34399154,34400711,34404916,34406673,34407523,34437397,34583543	34381613,34381856,34382068,34382251,34382529,34383053,34383528,34383853,34384047,34385157,34385338,34385474,34385778,34387952,34389768,34391265,34391426,34398729,34399203,34400759,34405055,34406870,34407735,34437442,34583651	0.500000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	122897286	122897330	122897286	-	High_confidence	5	5	18	0.806041	3.794653	chr9	122897211	122897256	DNA|TcMar-Mariner|MADE1	-	chr9	122844555	122898110	RC3H2|ENST00000373670.5	-	122844555,122851080,122851322,122853951,122854184,122854530,122855183,122855731,122857922,122858668,122859916,122865348,122877470,122879754,122879992,122880593,122883203,122890311,122892908,122897278	122849822,122851229,122851436,122854086,122854266,122854615,122855397,122855878,122858093,122859102,122860131,122865657,122877583,122879873,122880125,122880794,122883379,122890545,122893026,122898110	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	58455287	58455308	58455289	-	RAMPAGE_only	7	14	37	1.656862	4.572431	chr5	58455099	58455251	DNA|hAT-Charlie|MER5A	-	chr5	58453981	58460139	PLK2|NM_006622.3	-	58453981,58454910,58455284,58455538,58456025,58456491,58456944,58457180,58457487,58458083,58458398,58458724,58458984,58459689	58454774,58455021,58455414,58455779,58456155,58456589,58457092,58457379,58457583,58458171,58458528,58458841,58459092,58460139	0.972973
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	87039840	87039889	87039840	-	High_confidence	3	3	19	0.850821	3.681881	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.736842
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	108330408	108330417	108330416	+	RAMPAGE_only	5	8	15	0.671701	3.235926	chr11	108330466	108330549	LINE|L2|L2c	+	chr11	108332761	108336408	ATM|ENST00000533979.5	+	108332761,108333885,108334968,108335844,108336183	108332900,108333968,108335109,108335961,108336408	0.733333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	5498453	5498488	5498487	+	RAMPAGE_only	25	25	50	2.239002	4.337581	chr6	5498468	5498580	LINE|L2|L2b	+	chr6	5261525	5771580	FARS2|ENST00000274680.8	+	5261525,5368549,5404541,5431040,5545179,5613168,5771290	5261660,5369182,5404701,5431172,5545340,5613320,5771580	0.960000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	43013263	43013393	43013392	-	High_confidence	23	24	78	3.492843	5.568529	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	42721166	42721167	42721166	-	High_confidence	9	9	9	0.403020	2.947703	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	77532106	77532123	77532106	+	High_confidence	9	12	23	1.029941	3.653997	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.956522
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	38789812	38789837	38789812	-	RAMPAGE_only	9	11	26	1.164281	4.303509	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	0.923077
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	131686138	131686161	131686158	+	RAMPAGE_only	3	3	12	0.537361	3.095795	chr2	131685912	131686805	LINE|L1|L1MA6	-	chr2	131682457	131703357	MSTRG.21499.4	+	131682457,131684708,131686329,131688165,131696868	131682557,131686211,131686441,131688303,131703357	0.666667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	158863393	158863409	158863393	+	RAMPAGE_only	2	2	8	0.358240	2.500000	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.750000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	17	17	17	0.761261	3.263933	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	122444139	122444465	122444275	-	RAMPAGE_only	15	15	334	14.956535	5.180775	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	143828012	143828085	143828012	+	RAMPAGE_only	16	17	60	2.686803	4.812908	chr6	143827860	143828153	SINE|Alu|AluSz	+	chr6	143677964	143831185	PHACTR2|NM_001100164.1	+	143677964,143712015,143748984,143753753,143760400,143765260,143772257,143774058,143777327,143783218,143788772,143807056,143823673	143678209,143712183,143749065,143753912,143760640,143765798,143772457,143774215,143777383,143783280,143788910,143807133,143831185	0.950000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	95509593	95509595	95509594	-	RAMPAGE_only	4	7	9	0.403020	2.641604	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	77507543	77507544	77507543	-	RAMPAGE_only	10	10	14	0.626921	3.334679	chr14	77507332	77507629	SINE|Alu|AluSz6	-	chr14	77505996	77616767	SPTLC2|NM_004863.3	-	77505996,77518037,77521445,77552095,77555299,77557040,77562395,77570383,77576766,77578954,77597185,77616447	77512403,77518167,77521581,77552222,77555519,77557146,77562489,77570508,77576915,77579109,77597380,77616767	0.928571
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	120596719	120596754	120596753	-	RAMPAGE_only	4	4	20	0.895601	3.681881	chr3	120596706	120596936	SINE|MIR|MIR	+	chr3	120392292	120451253	FSTL1|ENST00000295633.7	-	120392292,120399882,120402807,120403241,120404852,120409531,120410951,120411853,120415922,120450683,120450896	120396996,120399959,120402918,120403354,120404971,120409662,120410984,120411983,120416027,120450746,120451253	0.500000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	134432378	134432443	134432435	-	High_confidence	12	16	50	2.239002	4.404828	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.880000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	103181328	103181329	103181328	-	RAMPAGE_only	14	16	16	0.716481	3.750000	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.562500
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	103353930	103353957	103353930	+	High_confidence	3	3	10	0.447800	3.321928	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.700000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	84174501	84174523	84174501	+	RAMPAGE_only	11	11	24	1.074721	4.053509	chr1	84174125	84174565	LINE|L2|L2c	+	chr1	84178834	84184046	PRKACB|ENST00000467507.1	+	84178834,84182199,84184036	84179238,84182328,84184046	0.625000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	39809803	39809876	39809858	-	High_confidence	21	28	76	3.403283	4.140558	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803699	39810063	MSTRG.37666.3	-	39803699,39809485,39809730	39803859,39809615,39810063	0.881579
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	46186136	46186253	46186143	-	RAMPAGE_only	6	6	50	2.239002	4.846370	chr12	46185953	46186190	DNA|TcMar-Tigger|Tigger16b	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	88533222	88533223	88533222	-	RAMPAGE_only	11	11	14	0.626921	3.392747	chr4	88532886	88533429	LTR|ERVL|MLT2A2	-	chr4	88520984	88523813	PYURF|ENST00000273968.4	-	88520984,88523497	88522029,88523813	0.857143
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	35432475	35432534	35432499	-	High_confidence	15	15	36	1.612082	4.704511	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.972222
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	7566514	7566534	7566530	-	High_confidence	7	7	23	1.029941	3.621176	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	38850500	38850567	38850528	+	RAMPAGE_only	3	3	31	1.388181	4.461092	chr8	38850509	38850800	SINE|Alu|AluJb	+	chr8	38839283	38853028	TACC1|ENST00000519093.5	+	38839283,38842286,38843288,38846698,38847954	38840267,38842447,38843395,38846819,38853028	0.935484
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	133458932	133458984	133458949	-	RAMPAGE_only	40	44	105	4.701905	4.307971	chr8	133458873	133459194	SINE|Alu|AluJo	-	chr8	133454852	133571925	ST3GAL1|ENST00000521180.5	-	133454852,133461874,133463413,133464777,133465893,133475718,133499134,133545773,133571692	133459937,133461994,133463459,133464957,133466090,133476600,133499189,133545926,133571925	0.980952
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	41900522	41900627	41900522	-	RAMPAGE_only	6	7	59	2.642023	4.538843	chr15	41900451	41900632	SINE|MIR|MIR3	-	chr15	41848370	41972552	MSTRG.12305.3	-	41848370,41849868,41850853,41851058,41851282,41851778,41852181,41852633,41852823,41853257,41853581,41854049,41854781,41855223,41855548,41856385,41856852,41857237,41857572,41858601,41858889,41860585,41861418,41861734,41862129,41862789,41863703,41863908,41865807,41866037,41866343,41866958,41867537,41868068,41868397,41869840,41870242,41870445,41871374,41871781,41872301,41873491,41873844,41874291,41874841,41875457,41876113,41876547,41876808,41877115,41878341,41879259,41879733,41880159,41881033,41881935,41882268,41882584,41882995,41883347,41885734,41887927,41890088,41892893,41893281,41899263,41909698,41919209,41943066,41953763,41972258	41848628,41849959,41850939,41851150,41851369,41851850,41852316,41852735,41853000,41853447,41853787,41854205,41854976,41855428,41855745,41856598,41857039,41857494,41857710,41858748,41858980,41860758,41861496,41861923,41862660,41862903,41863818,41864024,41865903,41866229,41866493,41867126,41867642,41868218,41868601,41870020,41870353,41870560,41871520,41871917,41872459,41873608,41874045,41874478,41875056,41875622,41876284,41876647,41876948,41877356,41878629,41879499,41879864,41880312,41881234,41882145,41882469,41882738,41883228,41883486,41887441,41888085,41890205,41893061,41893964,41901181,41909863,41919622,41943164,41953940,41972552	0.983051
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	38850651	38850729	38850651	+	RAMPAGE_only	12	12	70	3.134603	4.698898	chr8	38850509	38850800	SINE|Alu|AluJb	+	chr8	38839283	38853028	TACC1|ENST00000519093.5	+	38839283,38842286,38843288,38846698,38847954	38840267,38842447,38843395,38846819,38853028	0.971429
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	75263497	75263703	75263651	-	RAMPAGE_only	11	12	168	7.523047	5.066970	chr11	75263594	75263695	LINE|L2|L2c	+	chr11	75260128	75351705	MSTRG.6734.1	-	75260128,75260567,75267651,75268888,75272894,75274073,75276838,75277363,75278608,75281074,75281961,75283286,75284234,75287314,75290008,75351587	75260245,75266274,75267703,75268959,75272978,75274211,75276911,75277448,75278744,75281142,75282021,75283483,75284279,75287375,75290039,75351705	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	159681872	159682349	159681872	-	RAMPAGE_only	43	43	426	19.076299	6.332882	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	0.995305
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	86745114	86745145	86745126	+	RAMPAGE_only	4	4	20	0.895601	3.303702	chr1	86745106	86745336	SINE|MIR|MIRb	+	chr1	86704575	86748184	SH3GLB1|ENST00000370558.8	+	86704575,86715723,86719506,86722539,86724312,86734601,86735078,86742207,86743127	86704971,86715865,86719635,86722673,86724405,86734691,86735179,86742436,86748184	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	151676392	151676422	151676392	-	RAMPAGE_only	17	17	39	1.746422	4.323732	chr5	151676278	151676631	DNA|hAT-Charlie|MER113	+	chr5	151667473	151671829	SPARC|ENST00000524277.1	-	151667473,151669663,151671572	151667600,151669784,151671829	0.846154
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	24438729	24438730	24438729	+	RAMPAGE_only	4	4	7	0.313460	2.521641	chr14	24438481	24438765	LINE|CR1|L3	-	chr14	24429945	24441338	MSTRG.10665.4	+	24429945,24430482,24430713,24431462,24432721,24432935,24436067,24436387,24437035	24430119,24430623,24430931,24432610,24432852,24433032,24436179,24436489,24441338	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	150656984	150657258	150657177	+	RAMPAGE_only	45	45	573	25.658965	5.524011	chr5	150657191	150657354	SINE|MIR|MIR3	+	chr5	150640657	150659220	SYNPO|ENST00000307662.4	+	150640657,150647943,150656403	150640854,150650303,150659220	0.998255
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	107580245	107580272	107580264	+	High_confidence	1277	1280	6162	275.934631	7.514771	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.886238
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	127531647	127531711	127531647	-	RAMPAGE_only	5	5	43	1.925542	4.723406	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	0.953488
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	21833833	21833907	21833833	-	High_confidence	37	44	393	17.598557	6.276483	chr1	21833729	21833783	LINE|L2|L2c	-	chr1	21819141	21833577	MSTRG.510.1	-	21819141,21819889,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466	21819442,21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830132,21831090,21831324,21831562,21831796,21832606,21833384,21833577	0.994911
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	179527792	179527815	179527792	-	RAMPAGE_only	2	2	14	0.626921	3.521641	chr3	179527648	179527777	LTR|ERV1|LTR37B	-	chr3	179396088	179451590	GNB4|ENST00000232564.7	-	179396088,179405189,179413411,179413714,179414884,179416492,179419398,179420888,179426143,179451345	179401319,179405406,179413613,179413781,179415047,179416556,179419505,179420927,179426242,179451590	0.571429
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr13	45206633	45206638	45206633	+	High_confidence	6	7	10	0.447800	3.169925	chr13	45206646	45206717	SINE|MIR|MIRb	+	chr13	45206354	45267333	GTF2F2|ENST00000494087.5	+	45206354,45252870,45267232	45207505,45252970,45267333	0.700000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	105332515	105332536	105332515	+	High_confidence	4	4	20	0.895601	3.431624	chr12	105332447	105332765	SINE|Alu|AluSq2	+	chr12	105332759	105371517	MSTRG.9156.8	+	105332759,105348601,105365806,105366616,105367471,105370633	105332775,105348626,105365842,105366696,105367509,105371517	0.950000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	169812903	169812904	169812903	-	High_confidence	11	11	13	0.582141	2.968919	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	131510304	131510305	131510304	-	High_confidence	5	6	8	0.358240	2.521641	chr7	131510213	131510511	SINE|Alu|AluSx3	+	chr7	131509068	131510898	PODXL|ENST00000482581.1	-	131509068,131510827	131509585,131510898	0.750000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	33301641	33301766	33301646	-	RAMPAGE_only	13	15	82	3.671964	4.856641	chr6	33301622	33301752	LINE|L2|L2b	-	chr6	33299693	33314387	TAPBP|ENST00000434618.6	-	33299693,33303954,33304127,33304296,33304988,33313216,33313693,33314004	33301771,33303989,33304217,33304638,33305387,33313477,33313864,33314387	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	3083182	3083274	3083251	+	RAMPAGE_only	8	9	59	2.642023	5.361374	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	3536822	3536863	3536827	-	High_confidence	7	7	35	1.567302	4.593429	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.914286
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	17197790	17197852	17197851	+	High_confidence	7	7	22	0.985161	4.121928	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	0.863636
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	74448702	74448704	74448703	-	RAMPAGE_only	7	10	15	0.671701	3.378783	chr16	74448509	74448769	SINE|Alu|AluSx	+	chr16	74447426	74607114	GLG1|ENST00000205061.9	-	74447426,74453170,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74452131,74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607114	0.933333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	179118587	179118612	179118609	-	RAMPAGE_only	3	3	13	0.582141	3.251629	chr1	179118593	179118709	LINE|RTE-BovB|MamRTE1	-	chr1	179107717	179143044	ABL2|ENST00000504405.5	-	179107717,179109207,179110281,179112308,179114877,179117331,179118586,179120189,179121594,179126376,179131310,179142932	179108898,179109441,179110455,179112398,179115030,179117516,179118764,179120274,179121867,179126672,179131481,179143044	0.846154
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	55754859	55754888	55754859	-	RAMPAGE_only	16	17	41	1.835982	4.424268	chr4	55754611	55754914	SINE|Alu|AluSx3	+	chr4	55595228	55636698	NMU|NR_120489.1	-	55595228,55599141,55600521,55605274,55607436,55609119,55616337,55630401,55636543	55595411,55599181,55600575,55605349,55607466,55609179,55616385,55630460,55636698	0.853659
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	11774328	11774359	11774341	-	High_confidence	10	10	22	0.985161	3.884184	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	0.863636
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	33838228	33838326	33838228	+	RAMPAGE_only	10	10	61	2.731583	5.545331	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.819672
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr21	29077476	29077501	29077486	+	High_confidence	20	20	50	2.239002	4.188722	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.560000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	74614942	74614957	74614942	-	RAMPAGE_only	4	4	11	0.492580	3.321928	chr14	74614923	74615241	LTR|ERV1|LTR78B	-	chr14	74500410	74612378	LTBP2|ENST00000553939.5	-	74500410,74501440,74502563,74503218,74503468,74503925,74504777,74504982,74506047,74506697,74507178,74507972,74508603,74508829,74509237,74509733,74510090,74511244,74516821,74521910,74522789,74525123,74526074,74527346,74528482,74528957,74532425,74535925,74549862,74551063,74552186,74552891,74555502,74585853,74603634,74611450	74501029,74501590,74502934,74503386,74503606,74504054,74504861,74505174,74506191,74506823,74507310,74508095,74508729,74508952,74509363,74509859,74510213,74511364,74516941,74522039,74522918,74525225,74526114,74527366,74528698,74529122,74532548,74536000,74549965,74551350,74552393,74553062,74555693,74586118,74603705,74612378	0.818182
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	2881285	2881286	2881285	-	High_confidence	47	48	48	2.149442	4.815123	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.979167
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	43928053	43928054	43928053	+	RAMPAGE_only	6	6	6	0.268680	2.584963	chr7	43927922	43928330	LTR|ERVL-MaLR|MSTB	-	chr7	43926517	43953567	UBE2D4|ENST00000440652.5	+	43926517,43938430,43942953,43948631,43950598,43952649	43926556,43938494,43943031,43948737,43950692,43953567	0.833333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr13	46711826	46711841	46711826	+	RAMPAGE_only	2	2	7	0.313460	2.521641	chr13	46711708	46711858	LINE|L1|X9_LINE	-	chr13	46553167	46753040	LRCH1|ENST00000311191.10	+	46553167,46650200,46669029,46681740,46685904,46687851,46689132,46692535,46694892,46699335,46701120,46705067,46705267,46711790,46712524,46723220,46728846,46733920,46750539	46553703,46650345,46669156,46681846,46686041,46687979,46689196,46692641,46695017,46699403,46701207,46705157,46705304,46711844,46712597,46723330,46728984,46733998,46753040	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	9234216	9234235	9234216	+	RAMPAGE_only	2	2	8	0.358240	2.521641	chr2	9234172	9234396	SINE|MIR|MIRb	+	chr2	9206783	9405677	MSTRG.20045.3	+	9206783,9206955,9279316,9297299,9318523,9320287,9323120,9327825,9334737,9335092,9344531,9344730,9350807,9356046,9356178,9358755,9368424,9374754,9376907,9378943,9380740,9385244,9388293,9393481,9400022,9400741,9401273,9403252	9206888,9207230,9279389,9297445,9318598,9320337,9323250,9327911,9334813,9335179,9344635,9344800,9350895,9356095,9356345,9358889,9368519,9374944,9376993,9379059,9380808,9385358,9388546,9393647,9400072,9400830,9401396,9405677	0.750000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	141674421	141674476	141674463	-	RAMPAGE_only	10	11	43	1.925542	4.765731	chr7	141674396	141674980	LTR|ERVL|LTR84b	+	chr7	141661929	141701615	KIAA1147|ENST00000482493.1	-	141661929,141664171,141664903,141665186,141666286,141674066,141685477,141686558,141701555	141662851,141664240,141665054,141665318,141666386,141674220,141685636,141686658,141701615	0.720930
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	152313903	152313904	152313903	-	RAMPAGE_only	6	6	9	0.403020	3.000000	chr6	152313861	152314306	LINE|L2|L2b	+	chr6	152121779	152311167	SYNE1|ENST00000409694.6	-	152121779,152130719,152132121,152133275,152135103,152136617,152139949,152141202,152143622,152148044,152149476,152151552,152151958,152154891,152155909,152164162,152176393,152180135,152189251,152201823,152206167,152207971,152211493,152213611,152214905,152218256,152219002,152220841,152221425,152224493,152225720,152230546,152231390,152232115,152233780,152234667,152236106,152236816,152239532,152242239,152244536,152249160,152254879,152255590,152256633,152262031,152268055,152269154,152278088,152281806,152283977,152293587,152293959,152300640,152301868,152308488,152309834,152310395,152310687	152122676,152130778,152132214,152133488,152135232,152136818,152140161,152141329,152143765,152148378,152149668,152151690,152152141,152155042,152156097,152164325,152176560,152180294,152189407,152201949,152206362,152208206,152211588,152213759,152215060,152218403,152219185,152221046,152221559,152224664,152225876,152230702,152231567,152232265,152233963,152234800,152236303,152236948,152239706,152242440,152244656,152249262,152255089,152255746,152256765,152262188,152268165,152269286,152278280,152281980,152284172,152293749,152294127,152300781,152302063,152308632,152310017,152310518,152311167	0.666667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	64319758	64321438	64320831	-	RAMPAGE_only	37	38	1699	76.081295	8.277291	chr17	64320802	64321000	DNA|hAT-Charlie|MER20	-	chr17	64319414	64390878	PECAM1|NM_000442.4	-	64319414,64329699,64341633,64348259,64350379,64352389,64353490,64354932,64356110,64360139,64363148,64369749,64375050,64377823,64390488,64390601	64323845,64329722,64341690,64348322,64350433,64352463,64353518,64355040,64356398,64360415,64363397,64370025,64375356,64378117,64390515,64390878	0.998823
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	6918647	6918669	6918647	-	High_confidence	8	9	32	1.432961	4.440224	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6916850	6918663	RNF144A-AS1|ENST00000439208.1	-	6916850,6918280	6917224,6918663	0.625000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	145782887	145782904	145782887	-	RAMPAGE_only	8	11	19	0.850821	3.892407	chr4	145782725	145783063	LINE|L2|L2a	+	chr4	145760737	145938471	ZNF827|ENST00000379448.8	-	145760737,145763089,145764978,145765546,145774505,145775788,145779373,145823421,145845955,145849321,145870244,145885677,145892242,145902165,145938364	145761598,145763122,145765165,145765738,145774672,145775960,145779511,145823525,145846013,145849561,145870478,145886158,145892415,145903215,145938471	0.789474
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	81664342	81664349	81664342	+	RAMPAGE_only	10	15	26	1.164281	3.454041	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	65434134	65434230	65434171	+	RAMPAGE_only	4	7	43	1.925542	4.689704	chr11	65433870	65434194	LINE|L1|L1ME3F	-	chr11	65423637	65445556	MSTRG.6443.9	+	65423637,65424975,65437252	65424864,65437175,65445556	0.976744
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	47067487	47067513	47067498	-	High_confidence	153	166	628	28.121868	5.833917	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.917197
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	2242922	2242923	2242922	+	High_confidence	14	14	14	0.626921	3.521641	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	180646547	180646548	180646547	-	RAMPAGE_only	8	8	10	0.447800	2.725481	chr5	180646359	180646704	LINE|L2|L2c	+	chr5	180620974	180649545	FLT4|ENST00000424276.6	-	180620974,180621541,180622730,180623934,180625868,180626110,180628881,180629258,180629695,180629942,180630224,180630554,180631681,180649487	180621252,180621904,180622839,180624061,180626031,180626265,180628999,180629427,180629835,180630105,180630337,180630799,180631778,180649545	0.600000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	57794011	57794046	57794011	+	RAMPAGE_only	2	3	13	0.582141	3.251629	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.923077
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	45524098	45524140	45524139	+	RAMPAGE_only	3	3	18	0.806041	3.725481	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.666667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	11201309	11201343	11201309	-	RAMPAGE_only	2	2	9	0.403020	2.750000	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	3435704	3435745	3435704	-	High_confidence	132	134	455	20.374920	5.164316	chr10	3435309	3436154	LINE|L1|L1MB8	+	chr10	3432515	3435786	MSTRG.3767.1	-	3432515,3434806,3435673	3434362,3434978,3435786	0.975824
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	30971742	30971770	30971769	+	High_confidence	2	2	7	0.313460	2.807355	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	78620056	78620057	78620056	+	High_confidence	53	75	75	3.358503	5.358363	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.920000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	27579302	27579303	27579302	+	RAMPAGE_only	6	6	9	0.403020	3.000000	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27524255	27695564	PPFIBP1|ENST00000228425.10	+	27524255,27578151,27633361,27634909,27646061,27647728,27650009,27654721,27656615,27658815,27660883,27664361,27667165,27671430,27672426,27673766,27674191,27676427,27677063,27679488,27679932,27681545,27682386,27682614,27687384,27688297,27689014,27691748,27692590,27692795	27524365,27578239,27633460,27635115,27646148,27647842,27650141,27654814,27656730,27658848,27660945,27664446,27667320,27671546,27672483,27673827,27674221,27676599,27677096,27679639,27680061,27681696,27682498,27682703,27687507,27688423,27689203,27691928,27692656,27695564	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	55460761	55460775	55460761	-	RAMPAGE_only	5	5	14	0.626921	3.238901	chr7	55460684	55460933	LINE|L1|L1MA4A	-	chr7	55453563	55552852	MSTRG.34047.2	-	55453563,55471966,55492281,55497612,55521071,55552652	55471857,55473045,55492418,55497690,55521130,55552852	0.928571
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr20	1378171	1378212	1378171	-	RAMPAGE_only	2	2	12	0.537361	3.095795	chr20	1378076	1378229	LTR|ERVL-MaLR|MLT1L	+	chr20	1368977	1375603	FKBP1A|ENST00000474657.5	-	1368977,1369771,1372075,1375490	1369039,1370072,1372240,1375603	0.750000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	33068833	33068918	33068834	-	RAMPAGE_only	6	13	42	1.880762	4.034024	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.976190
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	51905849	51905850	51905849	+	RAMPAGE_only	7	7	7	0.313460	2.521641	chr14	51905656	51906021	LTR|ERVL-MaLR|THE1C	+	chr14	51877591	51969800	GNG2|ENST00000556752.2	+	51877591,51950649,51966558	51877657,51950765,51969800	0.857143
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	144533122	144533250	144533122	+	RAMPAGE_only	7	7	62	2.776363	5.145913	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144344125	144828855	MSTRG.33046.6	+	144344125,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789	144344304,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855	0.967742
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	93504673	93504674	93504673	-	RAMPAGE_only	96	96	96	4.298884	5.377772	chr5	93504513	93504869	LTR|ERVL-MaLR|THE1A	-	chr5	93411017	93438737	NR2F1-AS1|ENST00000606188.1	-	93411017,93438702	93411509,93438737	0.947917
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	36914685	36914693	36914692	+	RAMPAGE_only	3	3	7	0.313460	2.521641	chr6	36914707	36914996	SINE|Alu|AluSz6	+	chr6	36885863	36928964	C6orf89|NM_152734.3	+	36885863,36899425,36902220,36914283,36914553,36916444,36919577,36923346	36886028,36899633,36902434,36914435,36914693,36916574,36919701,36928964	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	96387561	96387584	96387573	-	High_confidence	3	3	11	0.492580	3.095795	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	150765951	150765958	150765957	-	High_confidence	7	7	14	0.626921	3.378783	chr1	150765956	150766249	SINE|Alu|AluJr	+	chr1	150730195	150765957	CTSS|NM_004079.4	-	150730195,150747776,150750005,150751780,150755000,150757857,150764637,150765697	150733145,150747879,150750171,150752008,150755150,150757980,150764764,150765957	0.928571
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	182928788	182928804	182928788	-	RAMPAGE_only	14	20	41	1.835982	4.312815	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.609756
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr21	41152355	41152356	41152355	-	High_confidence	14	14	14	0.626921	3.378783	chr21	41152183	41152550	LTR|ERVL-MaLR|THE1C	-	chr21	41143141	41152019	MSTRG.24209.2	-	41143141,41147348,41147961,41151941	41143415,41147499,41148126,41152019	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	81995887	81995952	81995951	+	High_confidence	52	57	107	4.791465	6.122171	chr16	81995714	81996778	LINE|L2|L2c	-	chr16	81995937	82008702	MSTRG.14943.1	+	81995937,82004526,82007466	81996048,82004789,82008702	0.644860
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	94996905	94996906	94996905	-	High_confidence	47	47	47	2.104662	4.501189	chr12	94996903	94997043	SINE|MIR|MIR3	+	chr12	94971331	94997447	NDUFA12|ENST00000550187.5	-	94971331,94994169,94997307	94971620,94994257,94997447	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	9170106	9170118	9170106	-	High_confidence	3	3	8	0.358240	3.000000	chr12	9170008	9176475	LINE|L1|L1PA11	+	chr12	9168455	9170118	PZP|ENST00000546116.1	-	9168455,9169429,9170048	9168974,9169591,9170118	0.500000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	53464774	53464822	53464815	+	RAMPAGE_only	13	13	46	2.059882	4.836396	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.891304
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	23403931	23403945	23403931	-	RAMPAGE_only	5	5	12	0.537361	3.459432	chr1	23403928	23404035	LINE|RTE-BovB|MamRTE1	+	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.583333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr18	35466804	35466903	35466804	-	High_confidence	18	20	67	3.000263	5.494930	chr18	35466801	35466967	DNA|hAT-Charlie|MER5A	-	chr18	35434971	35467081	MSTRG.17604.1	-	35434971,35438766,35443849,35446874,35466623	35438289,35438852,35444022,35446955,35467081	0.582090
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	85778522	85778532	85778531	+	High_confidence	5	5	13	0.582141	2.855389	chr4	85778413	85778594	SINE|MIR|MIR3	+	chr4	85778697	86002670	ARHGAP24|NM_001042669.1	+	85778697,85923647,85942065,85972035,85974887,85977569,85994582,86000478	85778965,85923770,85942273,85972168,85974961,85977691,85995657,86002670	0.846154
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr21	26468376	26468417	26468383	-	RAMPAGE_only	5	6	22	0.985161	3.916127	chr21	26468074	26468343	LINE|CR1|L3	-	chr21	26466208	26573275	MSTRG.23984.1	-	26466208,26480271,26566265,26572867	26468634,26480429,26566368,26573275	0.954545
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	10916714	10916774	10916773	+	RAMPAGE_only	4	4	18	0.806041	3.419382	chr19	10916771	10916976	SINE|MIR|MIR	+	chr19	10918985	10920870	CARM1|ENST00000586508.1	+	10918985,10919876,10920435,10920658,10920833	10919680,10919966,10920573,10920748,10920870	0.666667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr20	33813222	33813223	33813222	+	RAMPAGE_only	7	7	8	0.358240	2.521641	chr20	33812865	33813547	LINE|L2|L2a	-	chr20	33811303	33854367	CHMP4B|NM_176812.4	+	33811303,33848466,33850951,33852076,33853495	33811658,33848644,33851066,33852203,33854367	0.875000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	230417599	230417616	230417615	+	High_confidence	4	4	12	0.537361	3.022055	chr2	230417018	230417854	LINE|L1|L1ME3G	-	chr2	230416755	230470530	SP100|ENST00000409897.5	+	230416755,230417590,230440475,230442936,230444177,230446818,230449087,230449560,230450171,230461261,230462434,230464066,230466300,230467119,230469042,230470014	230416881,230417665,230440557,230443099,230444346,230446902,230449150,230449710,230450255,230461414,230462518,230464150,230466354,230467215,230469096,230470530	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	209840240	209840291	209840240	+	RAMPAGE_only	5	6	25	1.119501	4.084963	chr1	209840145	209840745	LINE|L2|L2b	-	chr1	209838804	209844632	UTP25|ENST00000457820.1	+	209838804,209840852,209842264	209839128,209841055,209844632	0.720000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	149519901	149519907	149519901	-	RAMPAGE_only	12	12	24	1.074721	3.907268	chr3	149519659	149519977	SINE|Alu|AluSq2	+	chr3	149517234	149658025	WWTR1|NM_001168280.1	-	149517234,149526012,149527835,149542334,149572863,149656875,149657824	149520989,149526125,149527969,149542537,149573000,149657309,149658025	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr18	46087007	46087019	46087015	-	High_confidence	2	2	8	0.358240	2.521641	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.625000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	107580488	107580507	107580506	+	High_confidence	6	6	10	0.447800	2.721928	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.700000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	16981012	16981056	16981012	-	High_confidence	2	2	12	0.537361	2.688722	chr1	16980879	16981020	SINE|MIR|MIRc	-	chr1	16974501	16980835	MFAP2|ENST00000375535.3	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16980586	16975023,16975342,16975730,16976545,16976794,16976923,16977198,16978314,16980835	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	158027723	158027743	158027742	+	High_confidence	4	4	10	0.447800	3.121928	chr6	158027591	158027871	LINE|L2|L2c	-	chr6	158027366	158029406	SYNJ2|ENST00000640569.1	+	158027366	158029406	0.800000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	144106368	144106463	144106431	+	High_confidence	3	3	25	1.119501	3.943465	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.600000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	131109410	131109428	131109410	+	RAMPAGE_only	2	3	6	0.268680	2.584963	chr3	131109170	131109680	LTR|ERV1|MER67A	-	chr3	131029708	131349776	NEK11|ENST00000508196.5	+	131029708,131080422,131109802,131132744,131133829,131152387,131152630,131155035,131162407,131165425,131168829,131170772,131228527,131243435,131273477,131349556	131029878,131080588,131109921,131132809,131133956,131152537,131152709,131155121,131162527,131165519,131168937,131170887,131228688,131243496,131273574,131349776	0.666667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	100831484	100831515	100831484	+	High_confidence	2	3	12	0.537361	3.027169	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100832063	100836223	MEG3|ENST00000521812.1	+	100832063,100836166	100832641,100836223	0.750000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	122852351	122852352	122852351	-	RAMPAGE_only	19	19	27	1.209061	3.653661	chr10	122852085	122852506	LINE|L1|L1MCa	+	chr10	122832148	122850793	CUZD1|ENST00000368904.5	-	122832148,122833671,122834705,122836177,122836830,122837403,122839016,122841177,122845761,122849236,122850423	122832450,122833940,122835097,122836350,122837048,122837554,122839231,122841328,122846220,122849439,122850793	0.814815
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	59619888	59619935	59619894	+	High_confidence	888	1046	5687	254.664110	6.312062	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.927730
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	3607943	3607980	3607944	-	RAMPAGE_only	10	16	38	1.701642	3.321888	chrX	3607875	3608180	SINE|Alu|AluJb	-	chrX	3604369	3713608	PRKX|ENST00000262848.5	-	3604369,3612176,3615814,3621258,3626418,3641851,3655148,3674597,3713087	3608945,3612325,3615892,3621316,3626514,3641971,3655412,3674766,3713608	0.947368
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	4652908	4652975	4652908	+	RAMPAGE_only	4	4	43	1.925542	4.203838	chr19	4652841	4653023	LTR|ERVL-MaLR|MLT1C	+	chr19	4640016	4655568	TNFAIP8L1|NM_001167942.1	+	4640016,4651866	4640159,4655568	0.976744
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	136643936	136644020	136643959	-	High_confidence	16	17	109	4.881025	5.776084	chr9	136643806	136644020	LINE|L1|HAL1	-	chr9	136633624	136644551	MSTRG.38784.1	-	136633624,136643743,136644173	136641401,136644021,136644551	0.944954
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	44234200	44234241	44234240	+	RAMPAGE_only	5	5	18	0.806041	3.572431	chr11	44234250	44234382	SINE|MIR|MIR3	+	chr11	44096222	44245425	EXT2|ENST00000343631.3	+	44096222,44107682,44109193,44114184,44124788,44126815,44130044,44171610,44197828,44206792,44232352,44234114,44236292,44244148	44096321,44108248,44109283,44114301,44124984,44126955,44130138,44171742,44198018,44206959,44232496,44234243,44236375,44245425	0.944444
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	109053951	109053957	109053951	-	High_confidence	6	6	13	0.582141	3.084963	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.923077
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	643627	643648	643635	-	High_confidence	7	7	18	0.806041	3.155222	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr18	46918782	46918784	46918782	-	RAMPAGE_only	2	4	7	0.313460	2.584963	chr18	46918721	46918913	LINE|L2|L2c	+	chr18	46803223	46917532	PIAS2|NM_001324049.1	-	46803223,46815311,46820932,46827958,46829733,46836356,46844053,46844733,46846706,46855344,46855564,46864163,46890579,46902434,46903526,46906226,46917321	46812612,46815349,46821072,46828130,46829867,46836517,46844127,46844839,46846841,46855435,46855615,46864248,46891054,46902557,46903635,46906315,46917532	0.714286
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr18	8376080	8376200	8376199	+	RAMPAGE_only	19	19	112	5.015365	5.710088	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8370932	8379313	PTPRM|ENST00000583153.2	+	8370932,8371759,8376045,8376461,8378264,8379166	8371006,8371810,8376200,8376597,8378414,8379313	0.750000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	32075876	32075884	32075879	+	RAMPAGE_only	3	3	10	0.447800	3.169925	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076966	32155011	ARHGAP5|ENST00000556611.5	+	32076966,32090501,32117142,32146262,32149901,32152422,32154620	32077053,32094386,32117287,32146340,32150033,32152528,32155011	0.600000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	112506812	112506885	112506883	+	RAMPAGE_only	3	6	18	0.806041	3.572431	chr12	112506599	112506946	LTR|ERVL-MaLR|MLT1H	-	chr12	112418913	112509913	PTPN11|ENST00000351677.6	+	112418913,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486474,112488442,112489023,112502143,112504694,112505824	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504796,112509913	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	48727420	48727422	48727420	-	RAMPAGE_only	4	9	10	0.447800	2.646439	chr19	48727220	48727380	SINE|MIR|MIR3	-	chr19	48720586	48725581	RASIP1|ENST00000601530.1	-	48720586,48721853,48724336,48724716	48720997,48722001,48724509,48725581	0.600000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	67395936	67395970	67395958	-	RAMPAGE_only	8	8	25	1.119501	3.381620	chr14	67395897	67395987	SINE|MIR|MIRb	+	chr14	67386986	67392705	PLEK2|ENST00000556532.1	-	67386986,67388223,67392325,67392661	67387456,67388302,67392427,67392705	0.680000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	123390725	123390749	123390725	+	High_confidence	5	5	19	0.850821	3.683542	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.842105
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	44722845	44722883	44722882	-	RAMPAGE_only	14	15	45	2.015102	5.136298	chr19	44722780	44723070	LINE|L2|L2b	-	chr19	44632198	44718631	AC243964.2|ENST00000590796.1	-	44632198,44699083,44715949,44718449	44632619,44699177,44716081,44718631	0.600000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	128626734	128626821	128626810	-	RAMPAGE_only	9	10	41	1.835982	4.853056	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.975610
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	23022039	23022198	23022039	-	RAMPAGE_only	4	4	52	2.328562	4.815824	chr8	23021976	23022248	SINE|Alu|AluJo	+	chr8	23020132	23027968	TNFRSF10B|ENST00000523752.5	-	23020132,23024187,23027132,23027721	23022984,23024260,23027288,23027968	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	51006088	51006179	51006088	-	RAMPAGE_only	6	6	63	2.821143	5.086315	chr17	51005881	51006041	DNA|hAT-Charlie|Charlie17a	-	chr17	50996228	51001745	SPAG9|ENST00000513827.5	-	50996228,50998443,50999660,51001714	50996694,50998617,50999717,51001745	0.793651
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	58424075	58424096	58424075	-	RAMPAGE_only	5	5	13	0.582141	2.968919	chr14	58423952	58424081	LINE|CR1|L3	-	chr14	58408663	58427114	TIMM9|ENST00000556007.6	-	58408663,58410842,58411906,58424007,58427053	58409099,58410938,58411971,58424095,58427114	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	28335885	28335916	28335915	-	High_confidence	3	3	9	0.403020	2.500000	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	27579332	27579393	27579333	+	RAMPAGE_only	4	7	25	1.119501	4.403856	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27524255	27695564	PPFIBP1|ENST00000228425.10	+	27524255,27578151,27633361,27634909,27646061,27647728,27650009,27654721,27656615,27658815,27660883,27664361,27667165,27671430,27672426,27673766,27674191,27676427,27677063,27679488,27679932,27681545,27682386,27682614,27687384,27688297,27689014,27691748,27692590,27692795	27524365,27578239,27633460,27635115,27646148,27647842,27650141,27654814,27656730,27658848,27660945,27664446,27667320,27671546,27672483,27673827,27674221,27676599,27677096,27679639,27680061,27681696,27682498,27682703,27687507,27688423,27689203,27691928,27692656,27695564	0.960000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	31494712	31494731	31494712	+	High_confidence	4	5	12	0.537361	3.277613	chr6	31494550	31494850	SINE|Alu|AluSp	+	chr6	31494880	31511124	MICB|NM_001289160.1	+	31494880,31505616,31506142,31507021,31507399,31509781	31494995,31505871,31506430,31507300,31507531,31511124	0.916667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	160350214	160350229	160350228	+	High_confidence	6	6	10	0.447800	3.121928	chr1	160350194	160350231	LINE|RTE-BovB|MamRTE1	-	chr1	160350104	160355753	NCSTN|ENST00000424645.6	+	160350104,160351287,160351695,160352053,160352886,160353159,160354117,160355654	160350250,160351372,160351805,160352206,160352991,160353237,160354290,160355753	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	101281871	101281904	101281871	-	RAMPAGE_only	5	5	20	0.895601	3.616349	chr2	101281489	101281823	SINE|Alu|AluJo	-	chr2	101276090	101308696	RNF149|ENST00000295317.3	-	101276090,101281858,101286080,101288972,101294013,101294930,101308128	101277281,101282057,101286177,101289055,101294082,101295181,101308696	0.850000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	93134907	93134936	93134921	-	RAMPAGE_only	10	10	35	1.567302	4.743289	chr7	93134901	93134953	SINE|5S-Deu-L2|AmnSINE1	-	chr7	93131032	93148345	SAMD9L|ENST00000437805.5	-	93131032,93144731,93145384,93145908,93146882,93148193	93135991,93144833,93145532,93146040,93147146,93148345	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	50785173	50785278	50785210	+	RAMPAGE_only	4	4	33	1.477741	3.604704	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	20694517	20694518	20694517	+	RAMPAGE_only	6	6	6	0.268680	2.584963	chr9	20694323	20694599	DNA|hAT-Charlie|Charlie15b	-	chr9	20683977	20995955	MSTRG.37425.4	+	20683977,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20684293,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.500000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	114345868	114345890	114345868	-	High_confidence	2	2	6	0.268680	2.584963	chr9	114345713	114345851	DNA|hAT-Charlie|Charlie17a	-	chr9	114336130	114346774	AKNA|ENST00000492875.1	-	114336130,114341532,114342008,114343707,114346668	114337306,114341725,114342125,114346009,114346774	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	41757421	41757487	41757421	-	RAMPAGE_only	5	5	81	3.627184	5.368990	chr17	41757254	41757383	DNA|hAT-Tip100|MER91B	-	chr17	41754603	41785155	JUP|ENST00000393930.5	-	41754603,41755729,41756174,41757414,41757633,41758398,41758714,41762982,41764712,41764922,41767378,41768968,41769417,41771646,41784946	41755432,41755895,41756214,41757536,41757784,41758518,41758870,41763321,41764816,41765067,41767580,41769207,41769677,41771862,41785155	0.950617
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	77663382	77663402	77663382	-	RAMPAGE_only	2	2	10	0.447800	2.725481	chrX	77663038	77663337	SINE|Alu|AluJb	-	chrX	77633352	77652276	ATRX|ENST00000623242.3	-	77633352,77633565,77634593,77635914,77651982	77633384,77633712,77634703,77636056,77652276	0.600000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	114624940	114625034	114625006	-	High_confidence	55	67	316	14.150494	6.036295	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.734177
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	35294429	35294453	35294445	+	RAMPAGE_only	14	14	61	2.731583	4.975698	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	0.918033
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	185620116	185620126	185620116	-	RAMPAGE_only	4	5	12	0.537361	2.845351	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.833333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	77142345	77142359	77142345	+	RAMPAGE_only	5	5	13	0.582141	3.085055	chr17	77142294	77142578	SINE|Alu|AluJb	+	chr17	77143596	77194757	SEC14L1|ENST00000591786.5	+	77143596,77190802,77191187,77193420,77194676	77143659,77190952,77191312,77193549,77194757	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	104030726	104030727	104030726	+	High_confidence	74	75	93	4.164544	5.456294	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.860215
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	84870519	84870541	84870537	-	RAMPAGE_only	7	12	45	2.015102	5.013858	chr4	84870233	84870887	LINE|L1|L1MCa	+	chr4	84849672	84860563	WDFY3|ENST00000504990.1	-	84849672,84860411	84850025,84860563	0.533333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	50379790	50379871	50379859	+	RAMPAGE_only	6	6	34	1.522521	3.711169	chr19	50379903	50379991	SINE|MIR|MIRc	+	chr19	50377244	50382944	NR1H2|ENST00000593926.5	+	50377244,50377586,50377732,50378148,50378521,50379001,50379779,50381965,50382455	50377328,50377648,50377870,50378439,50378796,50379181,50379879,50382174,50382944	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	6639923	6639941	6639923	-	RAMPAGE_only	3	3	10	0.447800	2.725481	chr1	6639724	6639885	SINE|MIR|MIR	-	chr1	6634167	6645057	DNAJC11|ENST00000465508.5	-	6634167,6636116,6637197,6637446,6639901,6644557,6645040	6635700,6636246,6637340,6638364,6640057,6644674,6645057	0.900000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	145480761	145480772	145480771	+	High_confidence	18	36	62	2.776363	5.059927	chr4	145480763	145480842	LINE|L2|L2a	-	chr4	145481193	145554035	MSTRG.28771.1	+	145481193,145514437,145539803,145542581,145546702,145553783	145481744,145515013,145540061,145542698,145546924,145554035	0.838710
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	9987139	9987165	9987162	+	High_confidence	13	13	39	1.746422	3.955292	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9987214	10003097	EMC3-AS1|ENST00000440568.1	+	9987214,9987814,9988711,10002716	9987264,9987905,9988747,10003097	0.538462
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	93773405	93773412	93773408	+	RAMPAGE_only	7	10	24	1.074721	3.823068	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.625000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	45000453	45000504	45000503	+	High_confidence	10	11	34	1.522521	4.328950	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.970588
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	119868997	119869029	119868997	-	RAMPAGE_only	3	3	20	0.895601	3.932138	chr12	119868893	119868972	SINE|MIR|MIRb	-	chr12	119685790	119877288	CIT|ENST00000261833.11	-	119685790,119690150,119697658,119697975,119700744,119701623,119701849,119704362,119708178,119710250,119710539,119712177,119712590,119713202,119713467,119714196,119718244,119718698,119720477,119721308,119728501,119730494,119734163,119735159,119742410,119752049,119757370,119758590,119760938,119767086,119772769,119775785,119776357,119776671,119782517,119783907,119784959,119803205,119822819,119825164,119832770,119834085,119850173,119857522,119869059,119876072,119877248	119688255,119690454,119697838,119698054,119700825,119701752,119701958,119704455,119708318,119710386,119710620,119712347,119712695,119713294,119713648,119714334,119718409,119718861,119720585,119721449,119728606,119730630,119734357,119735357,119742464,119752247,119757545,119758700,119761055,119767182,119772910,119775839,119776408,119776842,119782637,119784051,119785065,119803389,119822973,119825368,119832864,119834228,119850275,119857698,119869201,119876181,119877288	0.950000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	67571193	67571194	67571193	+	High_confidence	4	4	7	0.313460	2.807355	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	230543441	230543721	230543515	+	RAMPAGE_only	14	15	174	7.791728	4.200506	chr2	230543090	230544493	LINE|L1|L1PREC2	+	chr2	230537641	230544090	SP100|ENST00000488180.1	+	230537641,230540875,230541300,230541891,230542835	230539382,230540996,230541372,230542035,230544090	0.977011
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	96917700	96917721	96917701	+	RAMPAGE_only	17	22	39	1.746422	4.323613	chr5	96917624	96917934	SINE|Alu|AluY	+	chr5	96876505	96919716	MSTRG.30079.4	+	96876505,96879563,96883791,96889184,96892298,96895245,96896372,96896731,96900120,96901505,96902273,96903376,96908960,96909579,96912636,96913316,96915687,96917461,96918652	96876527,96880260,96883930,96889305,96892453,96895359,96896504,96896863,96900189,96901681,96902353,96903560,96909117,96909764,96912798,96913457,96915769,96918501,96919716	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	65126174	65126175	65126174	+	RAMPAGE_only	17	24	24	1.074721	4.251629	chr11	65126137	65126433	SINE|Alu|AluSx1	-	chr11	65124724	65127363	MRPL49|ENST00000532671.1	+	65124724,65125725	65125612,65127363	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	49371242	49371267	49371242	+	RAMPAGE_only	6	9	13	0.582141	2.661226	chr12	49371035	49371545	LINE|L1|L1MB3	-	chr12	49367546	49463625	SPATS2|ENST00000547865.5	+	49367546,49371227,49441729,49460769,49462274	49367587,49371290,49441816,49461037,49463625	0.615385
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	17488758	17488764	17488758	+	High_confidence	7	8	17	0.761261	3.499228	chr19	17488402	17488763	LINE|L2|L2b	+	chr19	17488759	17500555	SLC27A1|ENST00000593701.5	+	17488759,17489007,17497254,17500277,17500494	17488939,17489117,17497464,17500404,17500555	0.823529
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	47056722	47056736	47056722	-	RAMPAGE_only	3	3	9	0.403020	2.750000	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.555556
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	79631256	79631303	79631302	+	High_confidence	140	143	720	32.241632	6.578114	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.980556
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr18	35467022	35467118	35467080	-	High_confidence	207	236	738	33.047672	7.756202	chr18	35467057	35467118	DNA|hAT-Charlie|MER5A	-	chr18	35434971	35467081	MSTRG.17604.1	-	35434971,35438766,35443849,35446874,35466623	35438289,35438852,35444022,35446955,35467081	0.593496
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	32997349	32997350	32997349	-	High_confidence	7	9	9	0.403020	3.169925	chr9	32997347	32997748	LINE|L2|L2c	-	chr9	32972762	32997360	APTX|ENST00000479656.5	-	32972762,32974457,32984630,32985970,32987543,32988078,32989758,32997242	32973652,32974561,32984857,32986030,32987842,32988124,32989895,32997360	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	56904425	56904438	56904425	-	High_confidence	5	5	11	0.492580	3.277613	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56891582	56904488	MSTRG.16523.11	-	56891582,56891873,56895342,56895520,56895925,56899114,56901418,56904254	56891655,56892229,56895441,56895604,56895952,56899180,56901578,56904488	0.818182
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	21001486	21001584	21001490	-	RAMPAGE_only	7	16	78	3.492843	4.717976	chr17	21001390	21001559	DNA|hAT-Charlie|MER58B	+	chr17	20999592	21043039	USP22|ENST00000261497.8	-	20999592,21004201,21004927,21006895,21007869,21011150,21012829,21015751,21017941,21019083,21021112,21028541,21042664	21003073,21004351,21004990,21006987,21007996,21011309,21012935,21015899,21018111,21019185,21021226,21028674,21043039	0.987179
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	116327892	116327912	116327911	-	RAMPAGE_only	35	49	125	5.597506	6.343589	chr7	116327809	116328061	SINE|MIR|MIRb	-	chr7	116275605	116286727	LOC102724434|NR_130922.1	-	116275605,116284367,116286111,116286698	116277432,116284406,116286195,116286727	0.528000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	58048554	58048570	58048554	+	RAMPAGE_only	5	5	17	0.761261	3.625000	chr3	58048420	58048731	LINE|L1|L1MC4	-	chr3	58078328	58170777	FLNB|ENST00000493452.5	+	58078328,58078716,58081628,58094835,58096140,58097814,58098710,58102202,58103958,58105079,58106679,58108457,58109178,58109575,58110009,58111790,58112148,58118871,58121240,58123092,58124331,58125580,58126601,58130740,58132807,58134615,58135978,58138281,58142649,58143472,58145920,58146819,58148205,58148648,58149849,58150104,58153374,58154790,58155959,58159553,58163153,58168439,58169589,58170574	58078519,58078814,58081776,58094954,58096218,58097977,58098908,58102340,58104085,58105216,58106873,58108571,58109322,58109699,58110170,58111881,58112318,58118989,58121503,58123690,58124505,58125743,58126762,58130908,58132931,58134772,58136168,58138529,58142752,58143613,58146049,58146993,58148364,58148852,58150002,58150227,58153641,58154928,58156075,58159686,58163330,58168658,58169793,58170777	0.529412
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	10564937	10564962	10564937	-	RAMPAGE_only	4	4	14	0.626921	3.026987	chr19	10564755	10564893	SINE|MIR|MIRb	-	chr19	10553575	10565971	KRI1|ENST00000478863.5	-	10553575,10555086,10555284,10557551,10557971,10558163,10559358,10559612,10559809,10560311,10561002,10561168,10561666,10561790,10562728,10564928,10565716,10565905	10554281,10555185,10555349,10557895,10558060,10558239,10559529,10559708,10559936,10560448,10561080,10561265,10561716,10561845,10562837,10565034,10565790,10565971	0.928571
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	16154729	16154730	16154729	-	RAMPAGE_only	6	6	8	0.358240	3.000000	chr1	16154471	16154783	SINE|Alu|AluSq2	+	chr1	16148377	16156052	EPHA2|ENST00000461614.1	-	16148377,16155847	16149047,16156052	0.875000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	128012433	128012434	128012433	+	High_confidence	16	16	19	0.850821	3.616349	chr8	128012347	128012541	SINE|MIR|MIRb	-	chr8	128011565	128014125	MSTRG.36900.1	+	128011565	128014125	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	168243635	168243650	168243635	+	RAMPAGE_only	4	6	12	0.537361	3.022055	chr1	168243594	168243728	SINE|MIR|MIRc	-	chr1	168226007	168253025	SFT2D2|ENST00000271375.6	+	168226007,168231513,168231833,168235100,168236588,168236711,168239130,168242500	168226142,168231600,168231919,168235182,168236624,168236770,168239160,168253025	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	283506	283507	283506	+	High_confidence	4	5	7	0.313460	2.521641	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.571429
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	107872828	107872871	107872848	-	RAMPAGE_only	3	3	14	0.626921	3.238901	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.928571
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	139509386	139509418	139509386	-	RAMPAGE_only	5	5	20	0.895601	3.584184	chr4	139509339	139509538	DNA|hAT-Charlie|Charlie30a	-	chr4	139506037	139556769	SETD7|NM_030648.3	-	139506037,139517884,139520276,139523353,139529030,139533164,139546919,139556097	139511843,139518042,139520394,139523435,139529220,139533366,139547049,139556769	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	108127035	108127067	108127035	+	High_confidence	3	3	11	0.492580	2.913977	chrX	108127028	108127188	SINE|MIR|MIR3	+	chrX	108126076	108151858	ATG4A|ENST00000394892.2	+	108126076,108131259,108134056,108134338,108137090,108137803,108138112,108150151,108151801	108126187,108131358,108134158,108134411,108137170,108137991,108138191,108150297,108151858	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	12572777	12572826	12572792	-	RAMPAGE_only	2	2	11	0.492580	2.921928	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.909091
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	27822502	27822526	27822502	+	RAMPAGE_only	4	4	17	0.761261	3.499228	chr1	27822449	27822506	LTR|ERV1|LTR29	-	chr1	27773182	27824452	STX12|NM_177424.2	+	27773182,27789561,27793532,27801677,27810245,27812162,27817850,27819649,27822230	27773425,27789631,27793632,27801815,27810289,27812268,27817923,27819732,27824452	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	112507043	112507066	112507043	+	RAMPAGE_only	2	4	10	0.447800	2.921928	chr12	112507028	112507087	LTR|ERVL-MaLR|MLT1H	-	chr12	112418913	112509913	PTPN11|ENST00000351677.6	+	112418913,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486474,112488442,112489023,112502143,112504694,112505824	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504796,112509913	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	25212573	25212593	25212592	+	RAMPAGE_only	8	8	20	0.895601	3.070847	chr22	25212608	25212846	LTR|ERVL|LTR16C	+	chr22	25219521	25231869	CRYBB2|ENST00000398215.2	+	25219521,25221403,25224917,25227852,25229435,25231603	25219666,25221483,25225036,25227985,25229578,25231869	0.950000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	100268205	100268281	100268280	+	RAMPAGE_only	87	88	179	8.015628	4.237049	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.994413
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	5680234	5680252	5680240	-	High_confidence	14	14	60	2.686803	4.985487	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	33021454	33021456	33021455	-	RAMPAGE_only	8	12	15	0.671701	3.664498	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.933333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	46903606	46903657	46903622	-	RAMPAGE_only	5	8	26	1.164281	4.168296	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.923077
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	11225838	11225886	11225885	-	High_confidence	80	86	234	10.478530	6.690708	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.576923
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	8310227	8310247	8310240	+	High_confidence	13	14	39	1.746422	4.754378	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.897436
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	307580	307581	307580	-	RAMPAGE_only	7	7	7	0.313460	2.807355	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	0.857143
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr21	36466462	36466467	36466462	-	High_confidence	8	8	28	1.253841	4.450212	chr21	36466285	36466662	LTR|ERVL-MaLR|THE1C	-	chr21	36460620	36466441	CLDN14|NM_012130.3	-	36460620,36466366	36461776,36466441	0.750000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	48199407	48199435	48199434	-	RAMPAGE_only	7	9	41	1.835982	4.599379	chr17	48199174	48199607	LINE|L2|L2c	+	chr17	48180091	48185179	SKAP1|ENST00000579336.1	-	48180091,48182393,48184722	48180248,48182457,48185179	0.707317
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	143828754	143828786	143828754	+	RAMPAGE_only	11	12	36	1.612082	4.371178	chr6	143828714	143828929	DNA|hAT-Charlie|MER20B	-	chr6	143677964	143831185	PHACTR2|NM_001100164.1	+	143677964,143712015,143748984,143753753,143760400,143765260,143772257,143774058,143777327,143783218,143788772,143807056,143823673	143678209,143712183,143749065,143753912,143760640,143765798,143772457,143774215,143777383,143783280,143788910,143807133,143831185	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	10363706	10363707	10363706	+	High_confidence	44	45	58	2.597243	4.946411	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.913793
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	12249200	12249220	12249200	+	RAMPAGE_only	3	5	13	0.582141	2.855389	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.615385
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	77710859	77710888	77710876	+	High_confidence	3	3	13	0.582141	2.777363	chr14	77710914	77711213	LINE|L1|L1MA1	+	chr14	77710643	77717584	SLIRP|ENST00000556956.1	+	77710643,77715771,77717495	77710896,77715879,77717584	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	42377642	42377667	42377642	+	RAMPAGE_only	6	8	19	0.850821	3.787144	chr19	42377506	42377802	SINE|Alu|AluSx4	+	chr19	42359095	42378763	MSTRG.19351.7	+	42359095,42360774,42362089,42362383,42363047,42368454,42368842,42369530,42370188,42370700,42371349,42376250	42359242,42361006,42362213,42362597,42363262,42368662,42369002,42369723,42370359,42370831,42371482,42378763	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	159428384	159428417	159428384	-	RAMPAGE_only	2	2	10	0.447800	2.721928	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159400598	159419867	BAZ2B|ENST00000482501.5	-	159400598,159404848,159405021,159412334,159419779	159400664,159404910,159405114,159412545,159419867	0.700000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	113544695	113544698	113544695	+	RAMPAGE_only	4	6	10	0.447800	2.721928	chr9	113544688	113544815	SINE|MIR|MIRc	-	chr9	113501296	113550155	MSTRG.38378.7	+	113501296,113505441,113506387,113507286,113508540,113514457,113517540,113522929,113529220,113536795,113541319	113501630,113505523,113506493,113507638,113508580,113514654,113517624,113523041,113529264,113536918,113550155	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	75891269	75891305	75891304	+	RAMPAGE_only	3	3	12	0.537361	3.022055	chr6	75891350	75891661	SINE|Alu|AluY	+	chr6	75817523	75915177	MYO6|ENST00000627432.2	+	75817523,75822781,75828539,75830415,75832841,75835900,75840584,75841213,75844896,75848350,75855138,75857096,75858901,75861022,75862595,75866525,75866931,75870646,75873206,75879819,75880042,75881688,75886003,75886843,75890056,75891227,75892529,75894813,75895230,75898372,75907604,75908495,75911671,75914062,75914812	75817664,75822851,75828613,75830545,75832947,75835956,75840682,75841378,75844977,75848531,75855283,75857254,75858993,75861095,75862723,75866621,75867105,75870685,75873300,75879950,75880120,75881818,75886094,75886994,75890265,75891306,75892690,75894840,75895260,75898411,75907708,75908627,75911698,75914281,75915177	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	32479860	32479866	32479860	+	High_confidence	8	8	15	0.671701	3.378783	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.533333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	169721862	169721896	169721872	+	RAMPAGE_only	6	6	15	0.671701	3.378783	chr4	169721858	169722117	SINE|Alu|AluJb	-	chr4	169662721	169723183	CLCN3|ENST00000504131.6	+	169662721,169663113,169663526,169680049,169687657,169689042,169690529,169692113,169695611,169697188,169703997,169706867,169713078,169719906	169662738,169663114,169663617,169680207,169687757,169689230,169690652,169692320,169695692,169697734,169704184,169707266,169713295,169723183	0.933333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	16712889	16712979	16712889	-	High_confidence	12	13	69	3.089823	5.374768	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	37232803	37232823	37232822	-	RAMPAGE_only	5	5	13	0.582141	3.251629	chr22	37232591	37232793	LINE|L2|L2c	-	chr22	37225260	37244270	RAC2|ENST00000249071.10	-	37225260,37226670,37231230,37231931,37232800,37241586,37244113	37226039,37226803,37231390,37231994,37232918,37241658,37244270	0.923077
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	11225985	11226026	11226025	+	High_confidence	46	48	120	5.373605	6.119302	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11260775	MSTRG.25239.3	+	11226030,11259002	11226059,11260775	0.650000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	43694081	43694128	43694081	-	RAMPAGE_only	3	3	18	0.806041	3.337175	chr7	43693084	43695551	LINE|L2|L2a	+	chr7	43609232	43729483	COA1|ENST00000446564.5	-	43609232,43639448,43640572,43645250,43647534,43648599,43650611,43729428	43609641,43639681,43640649,43645399,43647634,43648652,43650712,43729483	0.611111
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	65642883	65642951	65642912	+	High_confidence	5	8	57	2.552463	5.376750	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	26484035	26484046	26484035	+	High_confidence	3	3	9	0.403020	2.503258	chr22	26484072	26484276	SINE|MIR|MIRb	+	chr22	26483883	26491938	SRRD|NM_001013694.2	+	26483883,26486022,26488028,26488389,26490043,26491024,26491462	26484099,26486063,26488288,26488488,26490198,26491070,26491938	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	74000185	74000199	74000185	+	RAMPAGE_only	6	6	13	0.582141	3.026987	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	129602471	129602472	129602471	-	RAMPAGE_only	10	10	11	0.492580	3.121928	chr3	129602197	129602633	LINE|L2|L2b	+	chr3	129583630	129606677	MSTRG.26654.18	-	129583630,129584124,129585951,129586171,129586587,129589350,129605328,129606057	129583669,129584233,129586081,129586272,129586719,129589527,129606025,129606677	0.636364
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	150640347	150640403	150640347	+	High_confidence	714	751	2508	112.308350	7.067155	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.989234
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr20	1938661	1938733	1938732	+	RAMPAGE_only	7	8	28	1.253841	3.512188	chr20	1938780	1938830	SINE|MIR|MIR1_Amn	+	chr20	1895295	1939897	SIRPA|ENST00000358771.4	+	1895295,1915098,1921394,1922312,1924763,1927874,1934714,1937319	1895526,1915455,1921712,1922645,1924877,1927899,1934754,1939897	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	141002187	141002216	141002215	-	High_confidence	4	4	15	0.671701	3.378783	chr8	141002088	141002337	LINE|L2|L2	-	chr8	140658404	141001379	PTK2|ENST00000519993.5	-	140658404,140664916,140668268,140669726,140674297,140675459,140686631,140700890,140702569,140706118,140717597,140735250,140739017,140743229,140744651,140746759,140752231,140761164,140762367,140764233,140769574,140789473,140793353,140800458,140803542,140818276,140818879,140830471,140846259,140846598,140864311,140890542,141001124	140659678,140664997,140668424,140669735,140674404,140675499,140686694,140701022,140702707,140706205,140717709,140735455,140739107,140743330,140744767,140746860,140752316,140761262,140762388,140764290,140769592,140789526,140793384,140800576,140803650,140818354,140819020,140830526,140846322,140846678,140864399,140890769,141001379	0.666667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	86938472	86938495	86938474	-	RAMPAGE_only	10	19	51	2.283782	4.598563	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86892213	86922104	AP001528.2|ENST00000528660.1	-	86892213,86896412,86921235	86892372,86896540,86922104	0.960784
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	43881914	43881929	43881914	-	RAMPAGE_only	5	6	18	0.806041	3.130718	chr7	43881785	43881943	LINE|L2|L2	+	chr7	43875912	43889634	URGCP|ENST00000336086.10	-	43875912,43881658,43881906,43887414	43879260,43881697,43881957,43889634	0.944444
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	145128379	145128452	145128379	+	RAMPAGE_only	3	3	23	1.029941	3.697846	chr4	145128390	145128482	DNA|hAT-Charlie|MER5B	+	chr4	145098003	145129524	ABCE1|NM_001040876.1	+	145098003,145104388,145105604,145108014,145109131,145110102,145110374,145110967,145112238,145117292,145119931,145121173,145121332,145123020,145123214,145123477,145124989,145127525	145098419,145104515,145105690,145108112,145109249,145110240,145110444,145111064,145112328,145117414,145120153,145121233,145121391,145123131,145123357,145123600,145125101,145129524	0.956522
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	129001521	129001524	129001523	-	RAMPAGE_only	4	6	9	0.403020	2.500000	chr3	129001421	129001474	DNA|hAT-Tip100?|MamRep1879	-	chr3	128970935	128994143	KIAA1257|NM_020741.2	-	128970935,128975778,128976978,128978044,128987615,128988727,128993042,128993979	128971433,128975903,128977066,128978185,128987829,128988918,128993336,128994143	0.666667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	21874105	21874159	21874158	-	High_confidence	12	12	30	1.343401	4.440224	chr1	21874115	21874327	SINE|MIR|MIRb	-	chr1	21819141	21874706	MSTRG.510.4	-	21819141,21819889,21822679,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874615	21819442,21822339,21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874533,21874706	0.733333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	155058715	155058773	155058772	+	High_confidence	86	88	240	10.747211	5.719030	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.937500
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	89588164	89588168	89588164	+	RAMPAGE_only	4	4	10	0.447800	2.721928	chr15	89586398	89589443	LINE|L2|L2a	-	chr15	89575586	89628012	TICRR|ENST00000560985.5	+	89575586,89582685,89584288,89585707,89592046,89594414,89595392,89599323,89600584,89601297,89601488,89601736,89602795,89606767,89608802,89616404,89618151,89619707,89621392,89623622,89625935,89626955	89576240,89582965,89584527,89585942,89592176,89594554,89595611,89599475,89600685,89601391,89601568,89601976,89602892,89606825,89608949,89616495,89618210,89619842,89621550,89625786,89626061,89628012	0.800000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	58755976	58755977	58755976	-	RAMPAGE_only	21	23	23	1.029941	3.363287	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	0.913043
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	46375554	46375585	46375584	+	High_confidence	5	6	17	0.761261	3.616875	chr11	46375632	46375749	SINE|MIR|MIRb	+	chr11	46375023	46377350	DGKZ|ENST00000529698.1	+	46375023,46375431,46375850,46376065,46376327,46376523,46377072	46375045,46375631,46375951,46376145,46376397,46376564,46377350	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	73366906	73366984	73366906	-	High_confidence	3	4	22	0.985161	3.880180	chr14	73366875	73367023	SINE|MIR|MIRb	+	chr14	73276548	73366920	NUMB|ENST00000560335.5	-	73276548,73282358,73287109,73292733,73297210,73316389,73323129,73355625,73366896	73277293,73282505,73287314,73292874,73297285,73316422,73323204,73355766,73366920	0.909091
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	169695148	169695157	169695156	+	High_confidence	4	4	8	0.358240	2.521641	chr5	169695012	169695314	LTR|ERVL-MaLR|MLT1I	+	chr5	169695178	169702427	DOCK2|ENST00000523684.5	+	169695178,169695802,169698373,169699381,169700013,169702302	169695216,169695938,169698449,169699458,169700139,169702427	0.625000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	46243208	46243236	46243208	-	RAMPAGE_only	2	5	12	0.537361	3.095795	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.916667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	100549700	100549719	100549708	+	RAMPAGE_only	2	2	6	0.268680	2.584963	chr9	100549608	100549765	LTR|ERVL?|LTR87	+	chr9	100473237	100577636	TMEFF1|NM_003692.4	+	100473237,100498764,100509004,100513306,100516674,100547743,100550094,100561396,100572517,100576515	100473740,100498874,100509134,100513333,100516771,100547892,100550160,100561520,100572676,100577636	0.833333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	157533689	157533708	157533707	-	High_confidence	5	6	10	0.447800	2.921928	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157428321	157533619	VEPH1|ENST00000479987.5	-	157428321,157460180,157470313,157533512	157428488,157460355,157470529,157533619	0.800000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	42959077	42959078	42959077	+	High_confidence	5	5	7	0.313460	2.807355	chr1	42959103	42959181	SINE|MIR|MIR3	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	18149858	18149869	18149868	+	High_confidence	40	41	118	5.284045	4.971171	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.966102
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	73837450	73837504	73837450	-	RAMPAGE_only	9	10	30	1.343401	3.626678	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	33400921	33400922	33400921	+	RAMPAGE_only	16	19	21	0.940381	3.787144	chr5	33400728	33401119	LTR|ERVL-MaLR|THE1D	+	chr5	33440695	33468091	TARS|NM_001258437.1	+	33440695,33441045,33445323,33448540,33453288,33454944,33455586,33456001,33456148,33457256,33458565,33459694,33460901,33461157,33461666,33461905,33462098,33463752,33466870,33467559	33440791,33441143,33445404,33448731,33453412,33455066,33455704,33456066,33456227,33457403,33458664,33459861,33461064,33461295,33461744,33462006,33462203,33463825,33466985,33468091	0.714286
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	4657664	4657695	4657694	-	RAMPAGE_only	4	5	10	0.447800	2.646439	chr10	4657322	4658496	DNA|TcMar-Tigger|Tigger3b	-	chr10	4650184	4678070	LINC00704|NR_024475.1	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678070	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	50757126	50757248	50757247	+	High_confidence	7	7	56	2.507682	5.025669	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.750000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	40815633	40815653	40815633	+	RAMPAGE_only	4	6	21	0.940381	3.405822	chr7	40810256	40816712	LINE|L1|L1PA16	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.666667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	58449500	58449507	58449500	+	RAMPAGE_only	3	4	9	0.403020	2.725481	chr8	58449418	58450701	LTR|ERVL-MaLR|MLT1D-int	-	chr8	58411263	58451501	UBXN2B|NM_001077619.1	+	58411263,58416849,58430518,58433159,58434394,58439632,58445906,58447388	58411469,58416953,58430669,58433243,58434504,58439770,58446068,58451501	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	124355438	124355467	124355447	-	RAMPAGE_only	12	15	31	1.388181	3.628619	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124324415	124422554	NCOR2|ENST00000356219.7	-	124324415,124326190,124327408,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124398118,124400500,124402403,124419956,124422500	124325583,124326370,124327633,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362297,124363799,124372610,124374463,124378384,124385887,124398181,124400673,124402561,124420055,124422554	0.935484
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	76670081	76670092	76670081	-	High_confidence	10	10	17	0.761261	3.625000	chr11	76670078	76670137	DNA|hAT-Tip100|MamTip2	-	chr11	76661034	76670000	LRRC32|ENST00000421973.1	-	76661034,76665870,76669761	76661508,76665958,76670000	0.941176
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	166850123	166850125	166850123	+	RAMPAGE_only	12	20	27	1.209061	4.161978	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.962963
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	203799342	203799343	203799342	+	High_confidence	16	17	18	0.806041	3.381580	chr1	203799077	203799888	DNA|hAT-Ac|OldhAT1	+	chr1	203799334	203854118	ZBED6|ENST00000545588.5	+	203799334,203816925,203818569,203828298,203829450,203829779,203830122,203831660,203833790,203837965,203840305,203847183,203848330,203849710,203850514,203851056,203852140	203803016,203817124,203818689,203828422,203829654,203829896,203830203,203831771,203833853,203838064,203840374,203847687,203848407,203850026,203850681,203851124,203854118	0.944444
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	15829094	15829095	15829094	+	High_confidence	9	9	9	0.403020	2.725481	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	99691445	99691468	99691467	+	RAMPAGE_only	3	5	9	0.403020	2.947703	chr3	99691450	99691571	DNA|hAT-Charlie|MER5A1	+	chr3	99638621	99794508	COL8A1|ENST00000621757.1	+	99638621,99691398,99744896,99790679,99794229	99638664,99691568,99745021,99791010,99794508	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	17823626	17823627	17823626	-	RAMPAGE_only	8	8	8	0.358240	2.500000	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	150556167	150556516	150556167	+	RAMPAGE_only	16	18	294	13.165333	4.776655	chr5	150556114	150556447	DNA|TcMar-Tigger|MamRep137	+	chr5	150508111	150558211	NDST1|ENST00000261797.6	+	150508111,150520867,150527803,150532944,150534866,150535699,150539227,150540081,150541569,150542847,150545311,150548217,150549677,150551752,150553212	150508226,150521767,150528298,150533032,150535021,150535885,150539356,150540264,150541666,150542971,150545486,150548388,150549787,150551855,150558211	0.976190
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr20	51627610	51627626	51627620	-	RAMPAGE_only	4	4	13	0.582141	3.026987	chr20	51627270	51627593	LINE|L2|L2a	-	chr20	51596513	51768328	ATP9A|ENST00000311637.9	-	51596513,51604816,51607526,51608517,51610100,51613676,51617489,51618661,51618953,51622073,51625191,51627599,51628979,51639342,51656937,51669996,51671114,51674152,51676131,51712965,51725818,51729833,51768301	51601347,51605020,51607584,51608626,51610165,51613832,51617554,51618806,51619043,51622172,51625362,51627683,51629072,51639504,51657150,51670109,51671257,51674313,51676208,51713074,51725932,51729978,51768328	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	11864375	11864460	11864408	-	RAMPAGE_only	5	5	32	1.432961	4.515320	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.562500
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	24887184	24887185	24887184	-	High_confidence	34	35	41	1.835982	4.859641	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24826046	24887184	MSTRG.20209.7	-	24826046,24827545,24827901,24830708,24831661,24834484,24834793,24836916,24838444,24839872,24841258,24841555,24842253,24872569,24887092	24826126,24827608,24828161,24830825,24831749,24834646,24834936,24837045,24838622,24840031,24841386,24841667,24842384,24872719,24887184	0.902439
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	26062560	26062568	26062567	-	RAMPAGE_only	28	29	57	2.552463	5.023885	chr14	26062523	26062899	LTR|ERVL-MaLR|MSTA	+	chr14	25647303	26143305	LINC02306|ENST00000546412.2	-	25647303,25649798,25660845,25663482,25664734,25835849,25837128,25838459,26126156,26143106	25649257,25649905,25660927,25663550,25664975,25835974,25837211,25838530,26126215,26143305	0.526316
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	33130000	33130063	33130062	+	RAMPAGE_only	7	7	31	1.388181	4.040224	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	0.967742
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr21	33265131	33265163	33265162	+	RAMPAGE_only	4	4	9	0.403020	2.725481	chr21	33265045	33265174	SINE|MIR|MIR3	+	chr21	33229970	33265675	IFNAR2|ENST00000404220.7	+	33229970,33241839,33243672,33244950,33246717,33248708,33252661,33260596,33262560	33230216,33241977,33243714,33245074,33246890,33248854,33252830,33260727,33265675	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	6208681	6208682	6208681	-	High_confidence	205	205	205	9.179909	3.790107	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.985366
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	9743885	9743891	9743885	-	RAMPAGE_only	2	2	7	0.313460	2.521641	chr1	9743549	9743856	SINE|Alu|AluJo	-	chr1	9729027	9751581	CLSTN1|ENST00000435891.5	-	9729027,9731205,9731760,9733400,9733971,9734947,9735466,9735884,9741093,9743883,9744394,9749460,9749763,9751472	9730705,9731390,9731896,9733546,9734142,9735174,9735615,9736042,9741256,9744005,9744643,9749646,9749913,9751581	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	53220846	53220887	53220846	-	RAMPAGE_only	4	7	23	1.029941	3.880180	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	0.913043
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	8384005	8384047	8384046	-	High_confidence	9	9	29	1.298621	4.356558	chr17	8384033	8384050	SINE|Alu|AluSq	-	chr17	8377515	8383250	RPL26|ENST00000293842.10	-	8377515,8379795,8382142,8383156	8377692,8379936,8382315,8383250	0.655172
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	70369506	70369532	70369506	-	RAMPAGE_only	2	2	11	0.492580	3.121928	chr14	70369394	70369467	DNA|hAT-Charlie|MER5A	-	chr14	70366495	70417045	SYNJ2BP|ENST00000256366.5	-	70366495,70375675,70388469,70416899	70373131,70375771,70388606,70417045	0.909091
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	139023336	139023341	139023340	-	RAMPAGE_only	3	6	9	0.403020	2.503258	chr7	139023281	139023546	DNA|hAT-Charlie|MER102c	+	chr7	139021497	139036029	MSTRG.35229.1	-	139021497,139028701,139034542,139035652	139026833,139028960,139034678,139036029	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	11963578	11964291	11963658	-	RAMPAGE_only	80	133	2306	103.262781	7.455796	chr11	11963645	11963694	DNA|hAT-Ac|OldhAT1	-	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.986123
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	150575730	150575759	150575758	+	RAMPAGE_only	3	3	9	0.403020	2.947703	chr3	150575806	150576097	SINE|Alu|AluSz	+	chr3	150568031	150584234	EIF2A|ENST00000465535.1	+	150568031,150568175,150571957,150575648,150583199,150583845	150568046,150568292,150572529,150575762,150583265,150584234	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	14202765	14202794	14202793	+	RAMPAGE_only	3	4	10	0.447800	2.947703	chr5	14202502	14202919	LTR|ERVL-MaLR|THE1B	+	chr5	14183797	14399400	TRIO|ENST00000509967.6	+	14183797,14270824,14280321,14286870,14290715,14293011,14297071,14304460,14316512,14330777,14336535,14358177,14359356,14363731,14364649,14366859,14368707,14369373,14374228,14378011,14381129,14387437,14387731,14388612,14389288,14390230,14390900,14394037,14397042,14398879	14183959,14270899,14280436,14287063,14291228,14293134,14297263,14304592,14316743,14330900,14336727,14358347,14359531,14363927,14364816,14366979,14368899,14369523,14374343,14378127,14381252,14387632,14387847,14388679,14389398,14390300,14390990,14394130,14397154,14399400	0.600000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	57451540	57451576	57451562	+	RAMPAGE_only	7	7	29	1.298621	3.978334	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57421134	57550702	MSTRG.12623.5	+	57421134,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57421250,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550702	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	52548955	52548991	52548956	-	RAMPAGE_only	40	70	115	5.149705	4.577676	chr15	52548772	52548988	DNA|TcMar-Tigger|MamRep434	-	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	55618850	55618851	55618850	-	High_confidence	10	11	15	0.671701	3.182006	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.866667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	241632221	241632243	241632221	-	RAMPAGE_only	3	4	8	0.358240	2.500000	chr1	241632007	241632363	LTR|ERVL-MaLR|THE1B	+	chr1	241628863	241635930	CHML|NM_001821.3	-	241628863	241635930	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	170751706	170751708	170751706	+	High_confidence	46	56	69	3.089823	5.154577	chr2	170750015	170751707	LINE|L1|L1MEc	+	chr2	170751804	170752788	EIF2S2P4|ENST00000461070.1	+	170751804	170752788	0.927536
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	64870483	64870529	64870525	-	RAMPAGE_only	6	6	25	1.119501	2.934694	chr9	64870414	64870933	LTR|ERV1|LTR10A	-	chr9	64765053	64765535	IGKV1OR-2|ENST00000457995.3	-	64765053,64765483	64765351,64765535	0.520000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	166185017	166185032	166185031	+	RAMPAGE_only	7	7	18	0.806041	3.734522	chr2	166184665	166185205	LINE|L2|L2a	-	chr2	166149180	166294588	AC010127.1|ENST00000630020.2	+	166149180,166171386,166199638,166248194,166249342,166251833,166277087,166294564	166149572,166171558,166199818,166248276,166249384,166251912,166277247,166294588	0.666667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	33706670	33706793	33706670	-	RAMPAGE_only	22	24	166	7.433487	4.902237	chr11	33706427	33706661	SINE|MIR|MIRb	-	chr11	33703009	33722727	CD59|NM_001127225.1	-	33703009,33717369,33722378,33722570	33710343,33717471,33722463,33722727	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	20423696	20423704	20423703	-	RAMPAGE_only	3	4	9	0.403020	2.641604	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	72363471	72363529	72363508	-	High_confidence	2	2	10	0.447800	3.169925	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.900000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	73994875	73994877	73994875	+	RAMPAGE_only	3	5	8	0.358240	2.521641	chrX	73994826	73995038	SINE|Alu|AluSp	-	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.750000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	50271485	50271488	50271485	+	High_confidence	11	11	18	0.806041	3.614369	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	143281636	143281687	143281686	-	High_confidence	10	14	36	1.612082	4.162573	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281250	MINCR|ENST00000519852.5	-	143280827,143281092	143280997,143281250	0.555556
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	75261560	75262037	75261560	-	High_confidence	182	183	950	42.541042	6.549004	chr11	75261362	75261565	DNA|hAT-Charlie|Charlie15a	-	chr11	75260128	75262466	AP001972.5|ENST00000624624.1	-	75260128	75262466	0.997895
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	94929147	94929182	94929181	-	RAMPAGE_only	20	29	59	2.642023	4.498720	chr8	94929079	94929133	SINE|tRNA-RTE|MamSINE1	-	chr8	94925971	94949366	TP53INP1|ENST00000448464.6	-	94925971,94932069,94939859,94940829,94949153	94930728,94932107,94940220,94941091,94949366	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	188884242	188884303	188884285	+	RAMPAGE_only	26	27	99	4.433224	5.760508	chr3	188884141	188884305	SINE|MIR|MIRc	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	60949435	60949459	60949443	-	RAMPAGE_only	10	13	36	1.612082	4.418201	chr1	60949259	60949438	SINE|MIR|MIRb	-	chr1	60940238	60970776	NFIA-AS2|ENST00000438559.5	-	60940238,60941179,60952510,60954321,60954484,60963565,60970547	60940631,60941252,60952684,60954370,60954602,60963804,60970776	0.638889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	63618045	63618046	63618045	-	High_confidence	12	12	12	0.537361	3.022055	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63531087	63618046	AC138305.1|ENST00000564290.1	-	63531087,63617692	63531304,63618046	0.500000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	102947726	102947739	102947728	-	RAMPAGE_only	5	10	18	0.806041	3.572469	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.777778
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	55371804	55372011	55371804	-	RAMPAGE_only	7	11	125	5.597506	5.997315	chr15	55371592	55371758	SINE|MIR|MIRb	-	chr15	55358838	55372952	CCPG1|ENST00000568372.5	-	55358838,55365187,55371792	55360944,55365309,55372952	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	116390216	116390247	116390246	+	RAMPAGE_only	4	4	21	0.940381	3.689704	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	48753676	48753677	48753676	-	High_confidence	9	9	9	0.403020	2.947703	chr19	48753519	48753902	LTR|ERVK|LTR13A	-	chr19	48748010	48753660	FUT1|ENST00000645652.1	-	48748010,48752489,48752891,48753324,48753647	48751283,48752725,48753122,48753563,48753660	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	50756541	50756607	50756606	-	RAMPAGE_only	3	3	24	1.074721	4.186704	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.916667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	65988637	65988675	65988674	+	High_confidence	2	2	7	0.313460	2.807355	chr5	65988722	65989005	SINE|Alu|AluJb	+	chr5	65988632	66078936	ERBIN|ENST00000508515.1	+	65988632,65992709,65994746,66012048,66013548,66014668,66021321,66023289,66024305,66025479,66025847,66026301,66028273,66038382,66043076,66044136,66046352,66048666,66050782,66053405,66076315,66076874,66078422	65988682,65992907,65994864,66012127,66013638,66014725,66021385,66023364,66024450,66025552,66025977,66026417,66028343,66038482,66043198,66044310,66046538,66048781,66050966,66054951,66076408,66076949,66078936	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	45450757	45450766	45450765	-	High_confidence	9	9	20	0.895601	3.646439	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.750000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	39494632	39494634	39494633	+	RAMPAGE_only	5	7	9	0.403020	2.500000	chr17	39494618	39494687	DNA|Merlin|Merlin1_HS	-	chr17	39462038	39535146	CDK12|ENST00000447079.4	+	39462038,39470878,39490556,39492750,39494523,39501249,39509704,39511528,39515730,39517439,39519955,39524673,39525863,39530603	39463117,39471763,39490733,39492890,39494694,39501439,39509761,39511630,39515808,39517556,39520087,39524885,39526316,39535146	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	72355126	72355146	72355145	-	High_confidence	15	15	32	1.432961	4.481728	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.875000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	30999449	30999520	30999519	-	High_confidence	28	33	202	9.045569	6.835455	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.504950
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	24816721	24816752	24816737	-	RAMPAGE_only	9	10	38	1.701642	4.019207	chr12	24816689	24817035	DNA|hAT-Charlie|MER1B	-	chr12	24814802	24902296	BCAT1|ENST00000538118.5	-	24814802,24829822,24832722,24836510,24842081,24849785,24878529,24881300,24894274,24901813,24901962	24818049,24829897,24832863,24836596,24842224,24849949,24878649,24881411,24894475,24901885,24902296	0.973684
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	172398605	172398645	172398644	+	RAMPAGE_only	7	10	28	1.253841	4.208966	chr3	172398604	172398839	SINE|MIR|MIR1_Amn	+	chr3	172040553	172401665	FNDC3B|ENST00000336824.8	+	172040553,172112451,172133470,172226870,172247532,172251259,172285925,172295362,172298727,172307362,172310827,172328951,172330540,172333088,172334943,172337329,172341112,172343010,172344085,172346326,172347211,172352802,172362632,172378269,172380965,172397163	172040624,172112590,172133546,172226947,172247776,172251541,172285984,172295514,172298787,172307501,172310881,172329076,172330715,172333175,172335082,172337401,172341231,172343116,172344258,172346440,172347361,172353083,172362845,172378436,172381093,172401665	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	179118710	179118739	179118734	-	RAMPAGE_only	2	2	9	0.403020	2.500000	chr1	179118593	179118709	LINE|RTE-BovB|MamRTE1	-	chr1	179107717	179143044	ABL2|ENST00000504405.5	-	179107717,179109207,179110281,179112308,179114877,179117331,179118586,179120189,179121594,179126376,179131310,179142932	179108898,179109441,179110455,179112398,179115030,179117516,179118764,179120274,179121867,179126672,179131481,179143044	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	62600209	62600211	62600209	-	High_confidence	4	8	9	0.403020	2.750000	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	98733157	98733169	98733157	+	High_confidence	2	3	7	0.313460	2.807355	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.571429
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	69051156	69051184	69051165	+	High_confidence	4	4	14	0.626921	3.521641	chr4	69050859	69051337	LTR|ERV1|LTR2B	+	chr4	69051362	69108227	UGT2B7|ENST00000502942.5	+	69051362,69089471,69098539,69102806,69107174,69108102	69051602,69089603,69098688,69102938,69107262,69108227	0.785714
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	27243370	27243371	27243370	-	RAMPAGE_only	8	10	12	0.537361	2.522055	chr16	27243362	27243410	LINE|L2|L2c	+	chr16	27233069	27258151	NSMCE1|ENST00000563900.5	-	27233069,27234187,27235177,27257434,27258083	27233147,27234265,27235299,27257581,27258151	0.583333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	17720653	17720676	17720653	+	High_confidence	17	17	61	2.731583	4.776446	chr19	17720320	17720705	LINE|L2|L2b	-	chr19	17720723	17726007	MAP1S|ENST00000598769.5	+	17720723,17724125,17725048,17725828	17721037,17724208,17725189,17726007	0.918033
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	32403116	32403261	32403116	-	RAMPAGE_only	31	35	175	7.836508	5.943869	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.960000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	45424346	45424385	45424382	-	High_confidence	9	18	37	1.656862	4.357838	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	77285061	77285081	77285080	-	RAMPAGE_only	6	6	10	0.447800	2.521928	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.600000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	109383422	109383447	109383446	-	High_confidence	4	4	17	0.761261	3.750000	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.941176
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	123382119	123382162	123382119	-	RAMPAGE_only	2	3	17	0.761261	2.983459	chr5	123381886	123382104	LINE|L1|L1ME4b	-	chr5	123344884	123423303	CEP120|ENST00000306467.9	-	123344884,123349943,123364495,123372649,123377373,123378335,123382110,123382736,123382985,123384950,123386517,123388431,123389923,123391109,123393299,123399135,123412398,123416009,123418358,123422949	123346753,123350089,123364594,123372772,123377535,123378428,123382200,123382889,123383082,123385133,123386667,123388606,123390140,123391337,123393497,123399284,123412540,123416124,123418515,123423303	0.941176
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr13	106561950	106561951	106561950	-	High_confidence	444	449	470	21.046621	6.835050	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.789362
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	29280832	29280877	29280853	-	High_confidence	10	10	28	1.253841	4.378783	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.535714
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	64439260	64439308	64439294	+	RAMPAGE_only	6	6	18	0.806041	3.260785	chr12	64439324	64439679	DNA|hAT-Charlie|Charlie4a	+	chr12	64404372	64448684	XPOT|NM_007235.4	+	64404372,64409961,64414906,64416697,64418045,64418875,64420069,64420352,64421234,64423004,64423181,64424598,64425037,64425337,64425814,64428050,64430048,64431537,64433413,64434506,64434793,64435626,64439243,64445074,64448104	64404804,64410095,64414989,64416754,64418115,64419094,64420254,64420521,64421471,64423043,64423244,64424723,64425182,64425457,64425909,64428120,64430287,64431823,64433603,64434623,64434909,64435674,64439315,64445131,64448684	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	32982549	32982592	32982550	+	High_confidence	23	37	84	3.761524	5.453746	chr10	32982518	32982768	SINE|Alu|AluSz6	-	chr10	32982540	33082102	ITGB1-DT|ENST00000414157.1	+	32982540,32985622,33081341	32982685,32985757,33082102	0.511905
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	169697680	169697682	169697680	+	RAMPAGE_only	5	7	11	0.492580	2.846439	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169662721	169723183	CLCN3|ENST00000504131.6	+	169662721,169663113,169663526,169680049,169687657,169689042,169690529,169692113,169695611,169697188,169703997,169706867,169713078,169719906	169662738,169663114,169663617,169680207,169687757,169689230,169690652,169692320,169695692,169697734,169704184,169707266,169713295,169723183	0.909091
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr18	199208	199314	199313	+	RAMPAGE_only	6	6	34	1.522521	4.233640	chr18	199329	199945	DNA|TcMar-Tigger|Tigger17a	+	chr18	196538	211268	USP14|ENST00000578786.1	+	196538,197615,198046,199201,202879,203097,204563,209970,210385,211132	196767,197696,198132,199316,202945,203190,204692,210031,210493,211268	0.970588
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	129156642	129156669	129156642	-	RAMPAGE_only	2	2	10	0.447800	2.921928	chr3	129156416	129156597	LINE|L1|L1MD	-	chr3	129134074	129161028	ISY1|ENST00000485703.1	-	129134074,129134831,129140367,129144067,129145760,129156632,129156854,129158507,129159153,129160972	129134195,129134954,129140485,129144189,129145873,129156675,129156920,129158559,129159176,129161028	0.600000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	74485813	74485823	74485813	-	RAMPAGE_only	5	5	11	0.492580	2.921928	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74468253	74472950	GLG1|ENST00000566601.1	-	74468253,74471172,74472348	74470073,74471286,74472950	0.636364
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	69051091	69051097	69051091	+	High_confidence	23	23	36	1.612082	4.283293	chr4	69050859	69051337	LTR|ERV1|LTR2B	+	chr4	69051362	69108227	UGT2B7|ENST00000502942.5	+	69051362,69089471,69098539,69102806,69107174,69108102	69051602,69089603,69098688,69102938,69107262,69108227	0.722222
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	19717844	19717884	19717864	-	High_confidence	4	4	21	0.940381	3.997670	chr16	19717752	19717834	SINE|MIR|MIRb	-	chr16	19706351	19718170	KNOP1|NM_001012991.2	-	19706351,19710508,19711371,19714117,19718157	19707221,19710586,19711440,19715037,19718170	0.809524
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	46280203	46280279	46280215	-	RAMPAGE_only	4	4	20	0.895601	3.215841	chr1	46280045	46280180	SINE|MIR|MIRb	-	chr1	46278400	46286112	LRRC41|ENST00000617760.4	-	46278400,46278906,46279181,46279491,46280191,46280395,46281124,46285361	46278905,46279084,46279257,46279614,46280290,46280560,46281385,46286112	0.950000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	71781052	71781147	71781097	+	RAMPAGE_only	13	13	97	4.343664	5.509721	chr15	71781091	71781809	LINE|CR1|L3	+	chr15	71547281	71783279	THSD4|ENST00000261862.7	+	71547281,71660529,71780541,71780547	71547481,71660726,71780545,71783279	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr21	37375030	37375041	37375040	+	High_confidence	4	4	11	0.492580	2.663533	chr21	37374933	37375048	SINE|MIR|MIRc	-	chr21	37375093	37512921	DYRK1A|ENST00000398960.7	+	37375093,37420298,37472683,37478180,37480637,37486466,37490174,37493016,37496117,37505282,37506098,37511910	37375117,37420384,37472880,37478300,37480826,37486614,37490461,37493163,37496258,37505589,37506223,37512921	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	91179462	91179526	91179462	-	High_confidence	10	10	45	2.015102	4.935863	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.955556
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	20674497	20674498	20674497	+	High_confidence	700	702	776	34.749314	5.238364	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.855670
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	50756902	50757005	50756987	-	RAMPAGE_only	12	23	93	4.164544	5.143840	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr13	113187336	113187344	113187343	-	High_confidence	13	13	31	1.388181	4.323231	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.677419
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	15657883	15657884	15657883	+	RAMPAGE_only	12	12	12	0.537361	2.617492	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	174410269	174410288	174410286	+	High_confidence	5	10	28	1.253841	4.088221	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.785714
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	1880066	1880088	1880087	-	High_confidence	10	13	34	1.522521	3.884859	chr19	1880079	1880146	DNA|hAT-Ac|OldhAT1	+	chr19	1877203	1880017	ABHD17A|ENST00000592757.1	-	1877203,1877507,1878663,1879920	1877425,1877687,1878904,1880017	0.676471
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	41495395	41495426	41495425	-	RAMPAGE_only	6	8	16	0.716481	3.750000	chr19	41495000	41495420	LTR|ERVL|ERV3-16A3_I-int	-	chr19	41454168	41500644	PCAT19|ENST00000588495.5	-	41454168,41479080,41494539,41500583	41456487,41479284,41495427,41500644	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	69237171	69237180	69237176	-	RAMPAGE_only	23	28	82	3.671964	5.500663	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69168463	69353697	MSTRG.26131.1	-	69168463,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69195230,69196254,69196899,69198697,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69353543	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195141,69195364,69196396,69197038,69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69353697	0.841463
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	203798381	203798425	203798424	+	High_confidence	12	16	42	1.880762	4.546847	chr1	203798311	203798434	DNA|hAT-Ac|OldhAT1	+	chr1	203797522	203800462	ZBED6|NM_001174108.1	+	203797522	203800462	0.976190
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	72442733	72442741	72442740	-	RAMPAGE_only	59	59	91	4.074984	3.891815	chr5	72442651	72442960	SINE|Alu|AluSx1	-	chr5	72439898	72507422	ZNF366|NM_152625.2	-	72439898,72447242,72456403,72460164,72507250	72444291,72447417,72456595,72461510,72507422	0.989011
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	83772880	83772949	83772948	-	High_confidence	18	18	46	2.059882	5.012480	chr16	83772863	83773289	LTR|ERV1|MER67D	-	chr16	83735341	83772917	AC009063.2|ENST00000569165.1	-	83735341,83772808	83735918,83772917	0.630435
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	17336719	17336727	17336719	+	High_confidence	8	8	20	0.895601	3.446439	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336723	17342730	GTPBP3|ENST00000598038.5	+	17336723,17338007,17338364,17338538,17338953,17339433,17341106,17341477,17342155	17337576,17338255,17338451,17338741,17339266,17339599,17341322,17341733,17342730	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	43453012	43453075	43453030	-	High_confidence	6	6	31	1.388181	4.348394	chr1	43452925	43453093	LINE|L2|L2c	+	chr1	43451159	43453909	HYI|ENST00000372427.5	-	43451159,43451427,43451647,43451797,43451934,43452204	43451311,43451544,43451717,43451847,43452013,43453909	0.967742
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	209495141	209495153	209495141	+	RAMPAGE_only	6	6	14	0.626921	2.968919	chr2	209495053	209495629	LINE|L1|L1P3	+	chr2	209424057	209730518	MAP2|ENST00000199940.10	+	209424057,209507591,209580035,209625052,209653141,209678571,209680749,209700276,209704449,209705579,209709913,209723594,209725708,209729849,209730181	209424276,209507641,209580100,209625129,209653432,209678685,209680827,209700338,209704620,209705727,209710254,209723687,209725790,209729962,209730518	0.857143
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	66207536	66207537	66207536	+	RAMPAGE_only	9	9	9	0.403020	2.725481	chr5	66207328	66207746	LTR|ERVL|MER21C	-	chr5	66596347	67169595	MAST4|NM_001164664.1	+	66596347,66759708,66788669,66899950,67054403,67090161,67095596,67100434,67102535,67104365,67110097,67114086,67118681,67121016,67130209,67131812,67133513,67134522,67136562,67142114,67142420,67144668,67145143,67149388,67152636,67153457,67160455,67162606,67163146	66597018,66759862,66788794,66899982,67054492,67090231,67095675,67100592,67102611,67104575,67110199,67114219,67118749,67121102,67130418,67131951,67133646,67134688,67136664,67142237,67142533,67144796,67145379,67149589,67152866,67153580,67160592,67162788,67169595	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	5680196	5680204	5680196	-	High_confidence	5	5	13	0.582141	2.931209	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	154038408	154038409	154038408	-	High_confidence	9	9	13	0.582141	2.719295	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.538462
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	9792243	9792275	9792267	-	High_confidence	2	2	8	0.358240	2.521641	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.625000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	11111786	11111812	11111789	-	High_confidence	5	5	25	1.119501	3.501629	chr6	11111706	11112217	LTR|ERV1|MER50	-	chr6	11102488	11111838	ERVFRD-1|NM_207582.2	-	11102488,11111676	11105630,11111838	0.960000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	45149944	45150020	45149959	-	RAMPAGE_only	7	7	80	3.582404	5.309184	chrX	45149877	45150181	SINE|Alu|AluSx1	-	chrX	45148373	45191933	MSTRG.39228.1	-	45148373,45153909,45157714,45159279,45162669,45191750	45151992,45154198,45157888,45162379,45164249,45191933	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	133369982	133370010	133370009	-	RAMPAGE_only	4	4	22	0.985161	4.011365	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.954545
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	4143199	4143218	4143199	+	High_confidence	231	239	549	24.584244	5.851359	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.985428
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	183129123	183129124	183129123	+	High_confidence	7	8	10	0.447800	2.641604	chr1	183129082	183129387	SINE|Alu|AluSc8	-	chr1	183128595	183133538	LAMC1|ENST00000478064.1	+	183128595,183130343,183131298,183132399,183133405	183128820,183130549,183131378,183132537,183133538	0.800000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr21	14882004	14882005	14882004	-	High_confidence	23	23	23	1.029941	3.969002	chr21	14881808	14882178	LTR|ERVL-MaLR|MLT1A0	-	chr21	14837181	14881910	LINC02246|ENST00000412426.5	-	14837181,14853273,14857541,14881886	14837823,14853431,14857708,14881910	0.521739
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	93431409	93431466	93431465	-	RAMPAGE_only	12	13	70	3.134603	5.284720	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	80115068	80115069	80115068	+	RAMPAGE_only	6	6	6	0.268680	2.584963	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.833333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	108134260	108134315	108134314	+	RAMPAGE_only	3	4	22	0.985161	3.879664	chr11	108134362	108134663	SINE|Alu|AluSc	+	chr11	108138719	108140171	ACAT1|ENST00000534773.1	+	108138719,108140064	108139041,108140171	0.772727
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	137693067	137693132	137693085	+	High_confidence	10	12	60	2.686803	5.369683	chr6	137691890	137693871	LTR|ERVL|ERVL-int	+	chr6	137693056	137699916	MSTRG.32947.1	+	137693056,137698676	137693227,137699916	0.566667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	9140393	9140428	9140393	+	High_confidence	42	42	190	8.508208	6.190236	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.684211
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	58578070	58578082	58578070	+	RAMPAGE_only	4	4	8	0.358240	2.750000	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58579110	58621042	ZFP91|ENST00000316059.6	+	58579110,58584855,58609829,58610297,58610949,58611603,58612277,58612761,58614228,58616715,58617195	58579622,58584884,58610039,58610334,58611054,58611738,58612328,58612840,58614343,58616815,58621042	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	15006475	15006493	15006475	+	RAMPAGE_only	6	6	11	0.492580	2.921928	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.818182
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	29643377	29643378	29643377	-	RAMPAGE_only	8	9	12	0.537361	2.913977	chr17	29643278	29643403	LTR|ERVL-MaLR|MLT1L	+	chr17	29630799	29761417	SSH2|ENST00000649863.1	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677738,29684684,29695523,29703062,29761417	0.833333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	43025257	43025308	43025303	+	High_confidence	15	15	43	1.925542	4.615312	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.697674
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	70590319	70590335	70590328	+	RAMPAGE_only	12	12	37	1.656862	4.077715	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579894	70660682	IL34|NM_152456.2	+	70579894,70646547,70654537,70656601,70656959,70659617,70659996	70580049,70646975,70654671,70656679,70657121,70659753,70660682	0.891892
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	82922606	82922616	82922613	+	High_confidence	6	6	21	0.940381	4.011365	chr11	82921878	82923072	LINE|L1|L1PB1	-	chr11	82922613	82931956	DDIAS|ENST00000533750.1	+	82922613,82928776,82930156,82931731	82922682,82928938,82930274,82931956	0.619048
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	20204078	20204094	20204078	-	RAMPAGE_only	3	4	9	0.403020	2.947703	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	23951347	23951372	23951365	+	High_confidence	3	3	9	0.403020	2.725481	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.666667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	92720690	92720691	92720690	-	RAMPAGE_only	7	11	11	0.492580	2.845351	chr9	92720689	92720791	DNA|TcMar-Tigger|Tigger19b	-	chr9	92711362	92764801	BICD2|NM_001003800.1	-	92711362,92717796,92718538,92720299,92722655,92729023,92764504	92715463,92717948,92719582,92720755,92722808,92729236,92764801	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	12989543	12989546	12989543	-	High_confidence	26	30	41	1.835982	4.958354	chr11	12989406	12989730	LTR|ERVL-MaLR|THE1D	-	chr11	12961841	12989547	LINC00958|ENST00000527945.2	-	12961841,12965107,12989455	12962763,12965214,12989547	0.560976
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	58565266	58565393	58565392	-	RAMPAGE_only	7	8	43	1.925542	4.629412	chr3	58565323	58565435	DNA|hAT-Charlie|Charlie19a	+	chr3	58564111	58577764	FAM107A|NM_007177.3	-	58564111,58567207,58569690,58570325,58577308	58566695,58567364,58569865,58570423,58577764	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	58578102	58578138	58578102	-	High_confidence	15	16	57	2.552463	5.216760	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.701754
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	1177786	1177819	1177818	-	RAMPAGE_only	4	4	17	0.761261	3.750000	chr19	1177653	1177788	SINE|MIR|MIR	-	chr19	1107633	1174283	SBNO2|NM_014963.2	-	1107633,1108778,1109134,1109291,1109505,1109682,1110744,1111018,1111505,1111995,1112188,1112401,1112817,1113534,1114230,1116020,1116828,1117322,1119010,1119515,1119905,1122138,1122467,1122657,1122893,1123533,1123941,1127603,1147308,1149368,1154183,1174171	1108704,1108969,1109211,1109423,1109598,1109777,1110888,1111093,1111614,1112067,1112301,1112537,1112949,1113704,1114422,1116103,1116926,1117499,1119164,1119621,1120023,1122282,1122558,1122791,1123045,1123639,1124022,1127765,1147420,1149442,1154402,1174283	0.882353
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	4736360	4736362	4736361	-	High_confidence	7	9	14	0.626921	2.753434	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	35662846	35662865	35662864	+	RAMPAGE_only	6	7	13	0.582141	3.546594	chr22	35662745	35663134	LTR|ERV1|MER4-int	+	chr22	35648394	35668409	APOL6|ENST00000409652.4	+	35648394,35656378,35658614	35648623,35656475,35668409	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	158660263	158660300	158660263	+	High_confidence	35	37	55	2.462902	4.789917	chr3	158660248	158660547	SINE|Alu|AluSq2	-	chr3	158660263	158665407	GFM1|ENST00000490261.1	+	158660263,158660873,158662627,158665336	158660624,158660975,158662684,158665407	0.836364
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	73683420	73683443	73683420	-	High_confidence	39	39	140	6.269206	6.030033	chr7	73683365	73683430	LINE|RTE-BovB|MamRTE1	+	chr7	73680917	73683451	DNAJC30|NM_032317.2	-	73680917	73683451	0.992857
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	77011249	77011280	77011249	+	RAMPAGE_only	31	33	107	4.791465	5.685993	chr4	77011235	77011415	DNA|hAT-Charlie|MER117	+	chr4	77020531	77039206	SEPT11|ENST00000506731.5	+	77020531,77028628,77030782,77036772,77039072	77020670,77028761,77030970,77036837,77039206	0.598131
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	117674439	117674453	117674452	-	RAMPAGE_only	21	25	86	3.851084	5.358495	chr12	117674347	117674707	LINE|L1|L1MB5	-	chr12	117517705	117677251	KSR2|ENST00000545002.1	-	117517705,117524851,117527070,117530940,117531665,117539718,117555168,117558505,117579118,117582289,117667473,117674282,117677193	117517852,117525219,117527119,117531013,117531707,117539887,117555293,117558573,117579202,117582359,117667658,117674356,117677251	0.825581
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	26832767	26832780	26832779	-	High_confidence	5	7	17	0.761261	3.375000	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.764706
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	65439360	65439411	65439410	+	RAMPAGE_only	11	12	39	1.746422	4.372335	chr11	65439400	65439684	SINE|Alu|AluSz6	+	chr11	65423637	65445556	MSTRG.6443.9	+	65423637,65424975,65437252	65424864,65437175,65445556	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	68944801	68944838	68944801	+	RAMPAGE_only	6	6	27	1.209061	3.528242	chr17	68944814	68945164	LINE|L1|L1MCc	+	chr17	69004713	69018323	ABCA9-AS1|ENST00000458677.1	+	69004713,69011982,69012251,69018103	69004793,69012103,69012353,69018323	0.629630
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	131510235	131510244	131510243	-	High_confidence	7	7	20	0.895601	3.787144	chr7	131510213	131510511	SINE|Alu|AluSx3	+	chr7	131505888	131509402	PODXL|ENST00000487965.1	-	131505888,131506259,131506578,131508950	131506035,131506321,131506726,131509402	0.750000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	25817271	25817795	25817417	+	RAMPAGE_only	39	45	527	23.599083	5.875792	chr1	25817213	25817514	SINE|Alu|AluSx	-	chr1	25812685	25818219	SELENON|ENST00000630065.2	+	25812685,25813880,25814076,25815547	25812792,25813993,25814178,25818219	0.998102
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	140485202	140485241	140485240	+	RAMPAGE_only	6	6	11	0.492580	3.027169	chr5	140485274	140485392	SINE|Alu|AluJo	+	chr5	140496649	140498190	ANKHD1|ENST00000462121.1	+	140496649,140498037	140497278,140498190	0.636364
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	15006394	15006395	15006394	+	RAMPAGE_only	7	8	8	0.358240	2.750000	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	54200557	54200578	54200557	+	High_confidence	9	9	17	0.761261	3.500000	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200195	54225464	MRPL37|ENST00000605337.5	+	54200195,54205017,54205294,54209945,54212500,54216140,54225124	54200589,54205201,54205410,54210131,54212658,54216344,54225464	0.941176
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	65181222	65181246	65181222	+	High_confidence	3	3	14	0.626921	3.238901	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.928571
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	60073752	60073764	60073763	-	RAMPAGE_only	3	3	7	0.313460	2.807355	chr17	60073534	60073713	SINE|MIR|MIR	-	chr17	60043491	60078921	HEATR6|ENST00000585976.5	-	60043491,60046024,60047308,60048263,60049579,60050842,60057056,60059421,60059889,60066208,60067433,60069710,60070705,60072214,60073163,60073745,60076129,60078695	60044134,60046229,60047405,60048388,60049702,60050860,60057403,60059521,60060096,60066386,60067732,60069848,60070807,60072329,60073279,60073886,60076237,60078921	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	20674646	20674648	20674647	+	High_confidence	7	13	17	0.761261	2.780639	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.941176
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	179856154	179856170	179856169	-	RAMPAGE_only	7	8	12	0.537361	2.751629	chr1	179855896	179856189	SINE|Alu|AluSz	+	chr1	179839966	179877799	TOR1AIP2|ENST00000367612.7	-	179839966,179847534,179850844,179852631,179877238,179877692	179846828,179847636,179851363,179852811,179877373,179877799	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	4355592	4355593	4355592	-	High_confidence	101	101	101	4.522784	4.814621	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.940594
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	71781556	71781604	71781587	+	RAMPAGE_only	12	13	37	1.656862	4.404739	chr15	71781091	71781809	LINE|CR1|L3	+	chr15	71547281	71783279	THSD4|ENST00000261862.7	+	71547281,71660529,71780541,71780547	71547481,71660726,71780545,71783279	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	105329655	105329674	105329670	-	High_confidence	16	16	58	2.597243	5.028078	chr2	105329666	105329774	LTR|ERV1|LTR2752	-	chr2	105264389	105329714	TGFBRAP1|NM_001142621.2	-	105264389,105269271,105272854,105273543,105275559,105277613,105280381,105284315,105296355,105298510,105307613,105329624	105267559,105269705,105273014,105273690,105275703,105277671,105280723,105284398,105296510,105298705,105308315,105329714	0.982759
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	85778400	85778467	85778466	+	High_confidence	9	9	43	1.925542	3.951143	chr4	85778413	85778594	SINE|MIR|MIR3	+	chr4	85778697	86002670	ARHGAP24|NM_001042669.1	+	85778697,85923647,85942065,85972035,85974887,85977569,85994582,86000478	85778965,85923770,85942273,85972168,85974961,85977691,85995657,86002670	0.953488
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	108686003	108686050	108686049	+	RAMPAGE_only	14	14	43	1.925542	4.689704	chr2	108686044	108686338	SINE|Alu|AluY	+	chr2	108654811	108687246	LIMS1|NM_001193485.2	+	108654811,108659604,108670780,108672324,108672879,108675877,108676605,108677978,108680694,108683884	108655256,108659764,108670847,108672445,108673029,108676028,108676698,108678027,108680770,108687246	0.976744
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	16102289	16102602	16102303	+	RAMPAGE_only	4512	4525	9573	428.679361	5.633129	chr19	16102068	16102357	SINE|Alu|AluSz	+	chr19	16088710	16102946	TPM4|ENST00000591645.2	+	16088710,16089044,16093535,16093683,16101263	16088849,16089120,16093598,16093753,16102946	0.997597
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	119525239	119525255	119525239	-	RAMPAGE_only	12	12	28	1.253841	4.310443	chr4	119525094	119525324	LINE|L2|L2c	+	chr4	119500822	119519099	PDE5A|ENST00000503412.1	-	119500822,119502580,119504535,119505854,119507603,119511046,119519044	119501253,119502655,119504599,119505932,119507704,119511134,119519099	0.714286
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	17282810	17282822	17282821	+	RAMPAGE_only	5	7	12	0.537361	3.084963	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	231072192	231072219	231072218	+	RAMPAGE_only	2	2	8	0.358240	3.000000	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231066903	231075566	PSMD1|ENST00000444007.1	+	231066903,231070024,231072332,231075510	231067111,231070168,231072415,231075566	0.500000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	9234162	9234163	9234162	+	RAMPAGE_only	13	13	14	0.626921	2.653544	chr2	9234172	9234396	SINE|MIR|MIRb	+	chr2	9206783	9405677	MSTRG.20045.3	+	9206783,9206955,9279316,9297299,9318523,9320287,9323120,9327825,9334737,9335092,9344531,9344730,9350807,9356046,9356178,9358755,9368424,9374754,9376907,9378943,9380740,9385244,9388293,9393481,9400022,9400741,9401273,9403252	9206888,9207230,9279389,9297445,9318598,9320337,9323250,9327911,9334813,9335179,9344635,9344800,9350895,9356095,9356345,9358889,9368519,9374944,9376993,9379059,9380808,9385358,9388546,9393647,9400072,9400830,9401396,9405677	0.571429
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	50240314	50240322	50240321	+	RAMPAGE_only	5	5	10	0.447800	2.921928	chr3	50240243	50240376	LINE|L2|L2b	-	chr3	50238111	50258751	GNAI2|ENST00000440628.5	+	50238111,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50238416,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258751	0.900000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	27509898	27509918	27509898	+	RAMPAGE_only	5	5	13	0.582141	3.180833	chr10	27509948	27510212	LINE|L2|L2c	+	chr10	27504618	27537966	RAB18|ENST00000423465.1	+	27504618,27504978,27509874,27526827,27531528,27532506,27533734,27533927,27537875	27504724,27505190,27509930,27526889,27531615,27532579,27533853,27533994,27537966	0.615385
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	133089588	133089693	133089692	+	RAMPAGE_only	36	39	180	8.060408	6.335025	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.994444
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	2757801	2757915	2757801	+	High_confidence	8	9	64	2.865923	5.095714	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.906250
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	8681676	8681677	8681676	+	High_confidence	75	75	95	4.254104	5.895349	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.726316
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	39026130	39026133	39026130	+	High_confidence	7	7	14	0.626921	3.085055	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.928571
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	12927729	12927751	12927733	+	High_confidence	27	29	74	3.313723	5.484211	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.689189
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	105176537	105176559	105176537	-	RAMPAGE_only	6	6	19	0.850821	3.281036	chr14	105176387	105176488	LINE|CR1|L3	-	chr14	105172937	105173697	NUDT14|ENST00000550912.1	-	105172937,105173480	105173261,105173697	0.947368
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	77736987	77737025	77736987	-	High_confidence	3	3	11	0.492580	3.095795	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.909091
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	49657343	49657356	49657355	-	High_confidence	31	32	125	5.597506	5.766291	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.800000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr18	46087064	46087076	46087065	-	High_confidence	3	5	9	0.403020	2.725481	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.666667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	65431802	65431844	65431802	+	RAMPAGE_only	2	2	21	0.940381	3.884184	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65423637	65445556	MSTRG.6443.9	+	65423637,65424975,65437252	65424864,65437175,65445556	0.952381
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	25861735	25861747	25861746	+	High_confidence	7	7	16	0.716481	2.827820	chr4	25861658	25861751	DNA|hAT?|UCON80	+	chr4	25861829	25929545	SMIM20|ENST00000515764.2	+	25861829,25928312,25929153	25862153,25928369,25929545	0.875000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	140676941	140676963	140676941	-	RAMPAGE_only	28	28	47	2.104662	4.351472	chr4	140676903	140676948	LINE|CR1|X7A_LINE	-	chr4	140620764	140756120	TBC1D9|ENST00000442267.2	-	140620764,140624115,140624313,140627440,140628299,140633947,140639085,140639329,140657096,140657526,140659587,140661892,140668916,140669633,140670719,140676893,140678941,140679614,140686343,140701503,140755915	140622917,140624219,140624388,140627527,140628365,140634188,140639154,140639428,140657226,140657812,140659705,140662107,140669067,140669804,140670926,140677101,140679203,140679843,140686462,140701614,140756120	0.978723
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	82175988	82176008	82176007	-	RAMPAGE_only	5	7	10	0.447800	2.725481	chr6	82175747	82176042	SINE|Alu|AluSp	+	chr6	82170235	82173578	IBTK|ENST00000508381.1	-	82170235,82172379	82171556,82173578	0.900000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	64715267	64715497	64715496	-	RAMPAGE_only	83	87	289	12.941433	6.298874	chr12	64715237	64715536	SINE|Alu|AluSx3	+	chr12	64713444	64752871	GNS|ENST00000418919.6	-	64713444,64720021,64721594,64723005,64728955,64737003,64739380,64740605,64743140,64744808,64745658,64747711,64752697	64716819,64720182,64721705,64723113,64729057,64737107,64739499,64740688,64743308,64744907,64745724,64747918,64752871	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	174409993	174410020	174410019	+	High_confidence	8	9	22	0.985161	3.748995	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410036	174428859	SCRN3|ENST00000548921.5	+	174410036,174422884,174424474,174427712	174410225,174423047,174424649,174428859	0.681818
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr20	62366989	62367116	62366989	-	High_confidence	8	8	61	2.731583	5.002910	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.967213
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	51403425	51403433	51403432	-	RAMPAGE_only	6	7	11	0.492580	2.721928	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.909091
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	127847120	127847135	127847134	-	High_confidence	14	14	29	1.298621	4.351823	chr9	127847119	127847312	SINE|MIR|MIR	-	chr9	127815011	127847167	ENG|NM_001278138.1	-	127815011,127815942,127817148,127818119,127818715,127819621,127819899,127824303,127824799,127825230,127825694,127826509,127829686,127843093,127846942	127815806,127816053,127817203,127818377,127818832,127819660,127820037,127824446,127824974,127825357,127825860,127826672,127829827,127843245,127847167	0.965517
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr18	36807865	36807870	36807869	-	High_confidence	29	32	51	2.283782	4.996115	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.647059
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	130894355	130894377	130894363	-	RAMPAGE_only	4	4	11	0.492580	3.121928	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	0.818182
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	37611919	37612155	37611919	-	RAMPAGE_only	10	11	165	7.388707	4.814202	chr4	37611893	37612201	SINE|Alu|AluYm1	+	chr4	37608946	37686376	MSTRG.27870.2	-	37608946,37611289,37613048,37631384,37634886,37638446,37647367,37649275,37686199	37611210,37612809,37613342,37631523,37635123,37638504,37647439,37649500,37686376	0.981818
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	16981569	16981612	16981569	-	High_confidence	162	173	935	41.869341	5.860950	chr1	16981567	16981905	LTR|ERV1|LTR64	+	chr1	16974501	16981586	MFAP2|NM_001135247.1	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16981513	16975023,16975342,16975730,16976545,16976794,16976923,16977195,16978314,16981586	0.971123
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	114705701	114705814	114705701	-	RAMPAGE_only	45	45	196	8.776889	4.401380	chr1	114705629	114705788	SINE|Alu|AluSx3	-	chr1	114704463	114716894	NRAS|NM_002524.4	-	114704463,114708153,114708530,114709568,114713799,114716049,114716657	114708050,114708192,114708654,114709728,114713978,114716177,114716894	0.994898
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	19668150	19668174	19668173	+	High_confidence	3	3	13	0.582141	3.418296	chr19	19668164	19668579	LTR|ERV1|LTR21B	-	chr19	19668152	19683506	ZNF101|NM_001300949.1	+	19668152,19677863,19678725,19679180	19668207,19677986,19678786,19683506	0.923077
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	24816828	24816896	24816846	-	RAMPAGE_only	14	15	50	2.239002	4.802987	chr12	24816689	24817035	DNA|hAT-Charlie|MER1B	-	chr12	24814802	24902296	BCAT1|ENST00000538118.5	-	24814802,24829822,24832722,24836510,24842081,24849785,24878529,24881300,24894274,24901813,24901962	24818049,24829897,24832863,24836596,24842224,24849949,24878649,24881411,24894475,24901885,24902296	0.980000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	89636647	89636658	89636647	-	RAMPAGE_only	2	2	9	0.403020	2.750000	chr6	89636481	89636680	LINE|L1|L1MB8	-	chr6	89634806	89638401	LYRM2|ENST00000517396.5	-	89634806,89637724,89638271	89637353,89637882,89638401	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	65431492	65431519	65431518	+	RAMPAGE_only	7	12	27	1.209061	3.973661	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65423637	65445556	MSTRG.6443.9	+	65423637,65424975,65437252	65424864,65437175,65445556	0.925926
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	76563877	76563891	76563890	+	RAMPAGE_only	3	4	6	0.268680	2.584963	chr17	76563801	76564058	SINE|Alu|AluSc	-	chr17	76557791	76565279	SNHG16|ENST00000590435.5	+	76557791,76558944,76561287,76563118,76563972	76557857,76559043,76561398,76563482,76565279	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	51921789	51922057	51921790	+	RAMPAGE_only	42	47	270	12.090612	6.177428	chr12	51921719	51922031	SINE|Alu|AluSq2	-	chr12	51915447	51923359	MSTRG.8399.8	+	51915447,51916035,51918984,51920758,51920956	51915500,51916233,51919115,51920892,51923359	0.992593
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	209495465	209495506	209495505	+	RAMPAGE_only	8	9	29	1.298621	4.008622	chr2	209495053	209495629	LINE|L1|L1P3	+	chr2	209424057	209730518	MAP2|ENST00000199940.10	+	209424057,209507591,209580035,209625052,209653141,209678571,209680749,209700276,209704449,209705579,209709913,209723594,209725708,209729849,209730181	209424276,209507641,209580100,209625129,209653432,209678685,209680827,209700338,209704620,209705727,209710254,209723687,209725790,209729962,209730518	0.896552
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	200862249	200862274	200862249	-	RAMPAGE_only	3	3	7	0.313460	2.584963	chr2	200862213	200862677	LTR|ERV1|LTR7B	+	chr2	200861089	200864252	CLK1|ENST00000481641.1	-	200861089,200861701,200864100	200861466,200861862,200864252	0.571429
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	193230138	193230157	193230149	+	RAMPAGE_only	8	8	49	2.194222	4.926428	chr3	193229952	193230170	SINE|MIR|MIRc	-	chr3	193241124	193270855	HRASLS|ENST00000264735.2	+	193241124,193255650,193262969,193270603	193241533,193255789,193263235,193270855	0.653061
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	158172987	158173025	158173024	-	High_confidence	51	52	82	3.671964	5.523320	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.878049
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	131522770	131522793	131522789	-	RAMPAGE_only	3	3	10	0.447800	2.921928	chr7	131522684	131523276	LINE|L1|L1MB8	-	chr7	131500261	131556563	PODXL|ENST00000446198.5	-	131500261,131505867,131506259,131506578,131508950,131510827,131556259	131504508,131506035,131506321,131506726,131509585,131511433,131556563	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	32927963	32927977	32927976	+	High_confidence	174	183	509	22.793042	6.762346	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927978	33044802	MSTRG.35977.1	+	32927978,32996200,33041634,33044366	32928093,32996316,33041771,33044802	0.858546
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	32816766	32816767	32816766	+	High_confidence	4	4	6	0.268680	2.584963	chr1	32816717	32816919	LINE|L2|L2c	+	chr1	32816766	32826489	S100PBP|ENST00000530710.5	+	32816766,32825312,32826097	32816982,32825429,32826489	0.833333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	49539150	49539152	49539150	+	RAMPAGE_only	12	16	24	1.074721	3.970573	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49542601	49543633	RCN3|ENST00000593483.1	+	49542601,49543105	49542668,49543633	0.500000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	19344373	19344412	19344388	-	RAMPAGE_only	5	5	42	1.880762	4.363530	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.928571
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	8681599	8681600	8681599	+	High_confidence	32	34	37	1.656862	4.551462	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.675676
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr21	36445909	36445931	36445909	+	RAMPAGE_only	7	7	23	1.029941	3.588354	chr21	36445948	36446090	LINE|L1|L1M4	+	chr21	36430359	36487760	MSTRG.24152.3	+	36430359,36445627,36478388,36480230	36430412,36446007,36478772,36487760	0.695652
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	27332388	27332393	27332388	+	RAMPAGE_only	13	14	22	0.985161	3.936260	chr16	27332160	27332534	LTR|ERVL-MaLR|THE1C	-	chr16	27341288	27364777	IL4R|ENST00000170630.6	+	27341288,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27364777	0.590909
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	9065162	9065171	9065167	+	High_confidence	4	4	16	0.716481	3.750000	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.625000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	96797184	96797194	96797193	-	RAMPAGE_only	10	12	16	0.716481	3.323231	chr5	96797097	96797154	DNA|hAT-Blackjack|MER81	-	chr5	96790584	96793671	ERAP1|ENST00000503311.1	-	96790584,96792060,96793399	96790643,96792192,96793671	0.687500
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr20	37297344	37297345	37297344	+	High_confidence	11	11	11	0.492580	3.277613	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	209900922	209900923	209900922	+	RAMPAGE_only	9	9	9	0.403020	3.169925	chr1	209900724	209901095	LTR|ERVL|LTR16	+	chr1	209938173	210164286	SYT14|ENST00000537238.5	+	209938173,209952708,209953054,210013632,210021038,210094321,210100011,210155720,210160728	209938277,209952756,209953259,210013797,210021254,210094593,210100461,210155910,210164286	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	20204034	20204057	20204034	-	RAMPAGE_only	8	8	21	0.940381	3.916127	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	61955382	61955402	61955401	-	RAMPAGE_only	7	8	14	0.626921	3.238901	chr17	61954857	61955361	LTR|ERVL-MaLR|MLT1D	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.928571
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	53546437	53546462	53546454	-	RAMPAGE_only	8	9	34	1.522521	4.176109	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53532779	53548052	MSTRG.39380.6	-	53532779,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543885,53544559,53545028,53546435,53546703,53547672	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546808,53548052	0.764706
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	154975497	154975525	154975524	+	High_confidence	4	4	14	0.626921	2.873141	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.928571
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	20674404	20674408	20674407	+	High_confidence	4	4	9	0.403020	2.750000	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.777778
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	2726958	2726963	2726962	+	High_confidence	5	5	11	0.492580	3.095795	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.636364
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	30429214	30429261	30429230	-	High_confidence	8	10	41	1.835982	4.173910	chr16	30429210	30429354	SINE|MIR|MIR3	+	chr16	30423913	30429289	DCTPP1|ENST00000568434.1	-	30423913,30429056	30424533,30429289	0.829268
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	65440658	65441015	65440781	+	RAMPAGE_only	24	24	396	17.732897	6.209543	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65423637	65445556	MSTRG.6443.9	+	65423637,65424975,65437252	65424864,65437175,65445556	0.994949
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	18227905	18227906	18227905	-	RAMPAGE_only	14	15	15	0.671701	3.521641	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.933333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	19352169	19352171	19352170	+	RAMPAGE_only	5	8	10	0.447800	2.721928	chr9	19352180	19352291	LINE|CR1|L3b	+	chr9	19346555	19373545	DENND4C|ENST00000361024.6	+	19346555,19350701,19352072,19352489,19356971,19357964,19360243,19361845,19369836,19371755,19372036	19347086,19350879,19352182,19352665,19357154,19358160,19360489,19361963,19369987,19371820,19373545	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	98221670	98221671	98221670	-	RAMPAGE_only	5	5	7	0.313460	2.521641	chr7	98221523	98221626	SINE|Alu|AluSx	-	chr7	98216736	98222961	TECPR1|ENST00000463402.5	-	98216736,98217691,98217935,98221660,98222385	98217503,98217811,98218042,98221753,98222961	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr18	46087112	46087181	46087118	-	High_confidence	8	8	33	1.477741	4.542748	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.606061
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	77110138	77110233	77110156	-	RAMPAGE_only	4	5	26	1.164281	3.840266	chr15	77110104	77110392	SINE|Alu|AluSx1	-	chr15	77108163	77252531	PEAK1|ENST00000312493.5	-	77108163,77133004,77158502,77178789,77252366	77115319,77133750,77158696,77182040,77252531	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	50016095	50016145	50016109	-	RAMPAGE_only	2	4	16	0.716481	3.506891	chr19	50016092	50016166	DNA|hAT-Ac|OldhAT1	-	chr19	49994862	50020647	VRK3|ENST00000599342.5	-	49994862,50000789,50007568,50009235,50015731,50016023,50020584	49994919,50000854,50007826,50009385,50015793,50016163,50020647	0.875000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	56157327	56157354	56157348	+	High_confidence	8	8	35	1.567302	3.728724	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.742857
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr18	75280681	75280726	75280681	+	RAMPAGE_only	34	40	112	5.015365	5.308565	chr18	75280540	75280747	SINE|MIR|MIRb	+	chr18	75282863	75289943	TSHZ1|ENST00000584217.1	+	75282863	75289943	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	54233843	54233852	54233851	-	RAMPAGE_only	3	3	7	0.313460	2.521641	chr12	54233648	54233891	SINE|Alu|AluJo	+	chr12	54230945	54259545	CBX5|NM_001127322.1	-	54230945,54246114,54252040,54257513,54259269	54241905,54246215,54252227,54257692,54259545	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	55671844	55671859	55671858	+	High_confidence	3	6	14	0.626921	3.378783	chr14	55671902	55672073	DNA|hAT-Charlie|MER5A	+	chr14	55671314	55684579	KTN1|ENST00000556631.1	+	55671314,55678351,55679564,55684098	55675918,55678444,55679685,55684579	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	20732410	20732427	20732410	+	RAMPAGE_only	3	3	11	0.492580	3.095795	chr9	20732128	20733009	LINE|L2|L2b	-	chr9	20715320	20995955	FOCAD|ENST00000338382.10	+	20715320,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.545455
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	17005393	17005401	17005393	-	High_confidence	6	6	16	0.716481	2.923231	chr1	17005163	17005347	SINE|MIR|MIR3	-	chr1	17000282	17005395	ATP13A2|ENST00000508222.5	-	17000282,17000399,17002033,17002295,17004331,17004706,17005013,17005373	17000312,17000507,17002103,17002373,17004411,17004821,17005072,17005395	0.687500
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	81939887	81939906	81939887	+	RAMPAGE_only	3	3	7	0.313460	2.521641	chr16	81939853	81939915	LINE|L2|L2	+	chr16	81785989	81958020	PLCG2|ENST00000359376.7	+	81785989,81854443,81858262,81859115,81869213,81870851,81880909,81883268,81889171,81891471,81893708,81895806,81900611,81905402,81907684,81908415,81910519,81912596,81919483,81921197,81923484,81927081,81928557,81931496,81934428,81936168,81937757,81938800,81939891,81946174,81956694,81956848,81957955	81786182,81854587,81858356,81859163,81869298,81870935,81880953,81883341,81889273,81891590,81893794,81895927,81900780,81905507,81907774,81908591,81910720,81912716,81919664,81921269,81923594,81927178,81928624,81931654,81934531,81936378,81937903,81938915,81940059,81946263,81956847,81956879,81958020	0.714286
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	4303818	4304588	4303912	+	RAMPAGE_only	34	34	521	23.330403	6.965239	chr12	4303932	4303980	LINE|RTE-BovB|MamRTE1	+	chr12	4278667	4305350	MSTRG.7618.4	+	4278667,4288841,4299859,4301014	4278919,4288990,4300942,4305350	0.998081
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	55796687	55796688	55796687	-	High_confidence	49	51	65	2.910703	4.968934	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796688	LINC00520|ENST00000649892.1	-	55781136,55793367,55796602	55782581,55793456,55796688	0.846154
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr10	63594776	63594825	63594824	+	RAMPAGE_only	11	16	62	2.776363	4.726148	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	0.951613
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	136643881	136643902	136643901	-	High_confidence	17	21	68	3.045043	5.144243	chr9	136643806	136644020	LINE|L1|HAL1	-	chr9	136633624	136644551	MSTRG.38784.1	-	136633624,136643743,136644173	136641401,136644021,136644551	0.823529
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	34255537	34255591	34255548	+	High_confidence	8	9	30	1.343401	4.110577	chr17	34255527	34255643	SINE|MIR|MIRc	-	chr17	34255284	34257203	CCL2|ENST00000225831.4	+	34255284,34256221,34256721	34255425,34256339,34257203	0.733333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	152717558	152717585	152717584	+	RAMPAGE_only	23	23	40	1.791202	4.304257	chr6	152717403	152717757	LTR|ERVL-MaLR|THE1B	+	chr6	152715737	152724501	MSTRG.33174.4	+	152715737,152721741	152717673,152724501	0.725000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	112956793	112956807	112956793	+	High_confidence	5	5	9	0.403020	3.000000	chr1	112956705	112956908	SINE|MIR|MIR	+	chr1	112956519	112968398	SLC16A1-AS1|ENST00000420168.1	+	112956519,112960476,112968034	112956956,112960575,112968398	0.555556
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	168249627	168249674	168249627	+	RAMPAGE_only	6	6	27	1.209061	3.796218	chr1	168249605	168249839	SINE|MIR|MIR	+	chr1	168226007	168253025	SFT2D2|ENST00000271375.6	+	168226007,168231513,168231833,168235100,168236588,168236711,168239130,168242500	168226142,168231600,168231919,168235182,168236624,168236770,168239160,168253025	0.962963
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	39064912	39064986	39064912	-	RAMPAGE_only	3	3	17	0.761261	3.734522	chr14	39064766	39064897	SINE|Alu|FLAM_C	-	chr14	39031918	39088723	SEC23A|ENST00000537403.5	-	39031918,39039030,39040731,39042785,39045162,39048651,39055142,39061764,39063323,39064912,39067172,39074414,39075934,39085761,39086928,39087523	39033328,39039096,39040887,39042872,39045324,39048729,39055296,39061871,39063413,39064993,39067296,39074530,39076093,39085906,39087008,39088723	0.941176
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	201115993	201116024	201116007	+	High_confidence	4	4	18	0.806041	3.101881	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.555556
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	147173173	147173226	147173225	+	High_confidence	5	5	27	1.209061	4.392747	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.925926
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	11795578	11795579	11795578	+	High_confidence	40	40	45	2.015102	4.175188	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.933333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	45150105	45150729	45150574	-	RAMPAGE_only	27	30	438	19.613659	6.483769	chrX	45150286	45150530	DNA|hAT-Tip100|MER115	-	chrX	45148373	45191933	MSTRG.39228.1	-	45148373,45153909,45157714,45159279,45162669,45191750	45151992,45154198,45157888,45162379,45164249,45191933	0.997717
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	77491284	77491291	77491284	-	High_confidence	3	3	9	0.403020	3.169925	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77453865	77491285	WDR41|ENST00000504895.5	-	77453865,77459061,77463094,77464760,77489456,77491192	77453928,77459124,77463226,77464809,77489572,77491285	0.777778
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	96638000	96638023	96638022	-	High_confidence	2	2	6	0.268680	2.584963	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.666667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	11225777	11225802	11225801	-	High_confidence	4	4	8	0.358240	2.500000	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	188109508	188109542	188109510	-	High_confidence	8	10	30	1.343401	4.323231	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188105412	188109603	TRIML2|ENST00000394461.2	-	188105412,188109242	188105587,188109603	0.533333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	41521719	41521776	41521719	-	High_confidence	4	4	21	0.940381	3.880180	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41513745	41521719	KRT15|ENST00000393976.6	-	41513745,41514648,41515471,41515884,41516103,41516807,41517082,41518329,41519344,41521684	41514120,41514674,41515692,41516010,41516265,41516964,41517165,41519010,41519872,41521719	0.952381
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	20658312	20658347	20658338	+	High_confidence	15	17	94	4.209324	5.264802	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658350	20995948	MSTRG.37425.3	+	20658350,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	0.659574
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	48111154	48111194	48111177	-	High_confidence	125	125	809	36.227056	7.567173	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47875718	48111348	MSTRG.32109.1	-	47875718,48008584,48068229,48068952,48102126,48111048	47879936,48009114,48068641,48069926,48102185,48111348	0.660074
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	29801518	29801540	29801518	-	RAMPAGE_only	5	5	17	0.761261	3.452820	chr15	29801463	29801760	SINE|Alu|AluYa5	-	chr15	29699366	29821548	TJP1|NM_001301026.1	-	29699366,29704161,29705527,29708558,29710830,29716610,29718020,29718265,29720357,29726378,29726780,29727936,29732432,29732630,29733093,29734273,29737263,29741330,29742641,29761138,29761600,29762334,29766265,29772063,29773232,29800645,29820526,29821415	29701689,29704305,29705745,29709036,29711000,29716838,29718118,29719138,29720708,29726479,29726991,29728019,29732528,29732815,29733313,29734382,29737414,29741436,29742781,29761286,29761769,29762438,29766542,29772166,29773357,29800702,29820674,29821548	0.823529
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr21	44872591	44872599	44872591	-	RAMPAGE_only	12	12	27	1.209061	3.825252	chr21	44872536	44872598	LINE|L2|L2	+	chr21	44849585	44873668	MSTRG.24277.3	-	44849585,44849823,44855209,44856192,44861162,44865394,44873501	44849753,44851627,44855256,44856364,44861271,44865447,44873668	0.962963
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	39310294	39310412	39310294	+	RAMPAGE_only	7	11	75	3.358503	5.555094	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.986667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	197299271	197299317	197299271	-	High_confidence	5	5	25	1.119501	4.053509	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197042559	197299272	DLG1|NM_001290983.1	-	197042559,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299272	0.880000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	75268290	75268291	75268290	-	RAMPAGE_only	7	10	10	0.447800	2.721928	chr6	75268211	75268937	LTR|ERVL|MER21C	+	chr6	75253612	75272900	TMEM30A|ENST00000370050.9	-	75253612,75258779,75259346,75260823,75265230,75267640,75272463	75256295,75258986,75259490,75260911,75265338,75267748,75272900	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	81170413	81170431	81170413	-	High_confidence	4	4	8	0.358240	2.500000	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	102431222	102431248	102431244	-	High_confidence	5	5	26	1.164281	4.315824	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.923077
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	52542752	52542768	52542767	+	RAMPAGE_only	6	7	21	0.940381	3.408695	chr19	52542563	52542810	LTR|ERV1|MER4A1	-	chr19	52535984	52553436	ZNF808|ENST00000461321.1	+	52535984,52543265,52547511,52553106	52536046,52543347,52547638,52553436	0.571429
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	940699	940740	940739	+	High_confidence	20	24	82	3.671964	5.285914	chr11	940287	940780	LINE|L1|HAL1	-	chr11	940734	972216	AP2A2|ENST00000527024.1	+	940734,959436,970168,972061	940894,959505,970311,972216	0.670732
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	6773322	6773490	6773489	+	RAMPAGE_only	3	4	36	1.612082	4.426734	chr17	6773300	6774578	LINE|L1|L1PREC2	+	chr17	6756061	6774108	XAF1|ENST00000571217.5	+	6756061,6758088,6762154,6770642,6773112	6756110,6758224,6762240,6770984,6774108	0.944444
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	39082976	39083067	39083065	+	RAMPAGE_only	13	24	93	4.164544	5.309012	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.784946
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	139344535	139344548	139344547	+	High_confidence	384	384	916	41.018520	6.000587	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.965066
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	21851131	21851185	21851184	+	High_confidence	4	7	24	1.074721	3.788755	chr7	21851065	21851438	LTR|ERVL-MaLR|THE1C	+	chr7	21851161	21861970	DNAH11|ENST00000607413.5	+	21851161,21852466,21854314,21861852	21851320,21852631,21854455,21861970	0.875000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	77128045	77128055	77128054	+	High_confidence	6	6	10	0.447800	2.947703	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127878	77214331	MSTRG.17007.28	+	77127878,77142645,77143566,77190802,77191180,77193420,77194676,77196201,77200483,77203569,77205275,77206228,77206727,77209341,77211949,77213313,77213917	77128087,77142750,77143659,77190952,77191312,77193549,77194911,77196311,77200673,77203658,77205346,77206400,77206862,77209476,77212201,77213492,77214331	0.900000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	215848877	215848878	215848877	-	RAMPAGE_only	559	560	714	31.972951	6.602176	chr2	215848652	215849119	LTR|ERVL|MER70B	-	chr2	215743819	215843722	LINC00607|ENST00000417922.1	-	215743819,215747303,215750242,215843325,215843623	215743914,215747394,215750417,215843423,215843722	0.663866
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr20	3795750	3795789	3795788	+	High_confidence	31	32	181	8.105188	6.192120	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.988950
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	43508342	43508349	43508348	+	RAMPAGE_only	30	30	51	2.283782	4.369413	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	0.960784
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	64322068	64322225	64322094	-	RAMPAGE_only	10	12	116	5.194485	5.615801	chr17	64322087	64322404	SINE|Alu|AluSq	+	chr17	64319414	64390878	PECAM1|NM_000442.4	-	64319414,64329699,64341633,64348259,64350379,64352389,64353490,64354932,64356110,64360139,64363148,64369749,64375050,64377823,64390488,64390601	64323845,64329722,64341690,64348322,64350433,64352463,64353518,64355040,64356398,64360415,64363397,64370025,64375356,64378117,64390515,64390878	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	218287279	218287283	218287279	-	High_confidence	7	8	17	0.761261	3.572469	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.588235
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	43835119	43835143	43835142	+	RAMPAGE_only	5	5	12	0.537361	2.918296	chr15	43835184	43835492	SINE|Alu|AluJr	+	chr15	43826979	43867018	WDR76|ENST00000381246.6	+	43826979,43827964,43835060,43836160,43839604,43842414,43842627,43843900,43851086,43856945,43858670,43861332,43866127	43827118,43828366,43835150,43836216,43839728,43842516,43842671,43844054,43851245,43857163,43858823,43861386,43867018	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	64321572	64321720	64321709	-	RAMPAGE_only	21	26	130	5.821406	5.746643	chr17	64321475	64321784	SINE|Alu|AluJb	+	chr17	64319414	64390878	PECAM1|NM_000442.4	-	64319414,64329699,64341633,64348259,64350379,64352389,64353490,64354932,64356110,64360139,64363148,64369749,64375050,64377823,64390488,64390601	64323845,64329722,64341690,64348322,64350433,64352463,64353518,64355040,64356398,64360415,64363397,64370025,64375356,64378117,64390515,64390878	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	65887614	65887630	65887614	-	High_confidence	5	5	9	0.403020	2.750000	chr11	65887463	65887575	LINE|L2|L2	-	chr11	65884934	65888436	FIBP|ENST00000532229.1	-	65884934,65885077,65885508,65887599,65887933,65888333	65884998,65885186,65885663,65887726,65888132,65888436	0.777778
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	106598810	106598906	106598810	-	High_confidence	10	10	39	1.746422	4.490029	chr7	106598614	106598802	LTR|ERVL-MaLR|MLT1J	-	chr7	106569875	106598808	AC005050.1|ENST00000650160.1	-	106569875,106572947,106591549,106598753	106571144,106573160,106591682,106598808	0.794872
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	136643758	136643759	136643758	-	High_confidence	14	14	17	0.761261	3.454822	chr9	136643585	136643733	LTR|ERVL-MaLR|MLT1J	-	chr9	136633624	136644551	MSTRG.38784.1	-	136633624,136643743,136644173	136641401,136644021,136644551	0.941176
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	2728416	2728425	2728416	-	High_confidence	8	13	32	1.432961	4.215018	chr8	2728201	2728557	LTR|ERV1|LTR12C	+	chr8	2696553	2728417	AC246817.2|ENST00000520842.5	-	2696553,2705214,2728329	2696970,2705286,2728417	0.562500
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	5054763	5054772	5054771	-	High_confidence	3	3	7	0.313460	2.521641	chr6	5054568	5055401	LTR|ERV1|MER4D0	+	chr6	5031755	5054423	AL359643.2|ENST00000606227.1	-	5031755,5054077	5034682,5054423	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr22	39320334	39320382	39320334	-	High_confidence	5	5	15	0.671701	2.699514	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.933333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	122074123	122074156	122074134	-	RAMPAGE_only	10	10	40	1.791202	4.616349	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065943	122076083	LOX|ENST00000505593.5	-	122065943,122070052,122070493,122074012,122075403,122076017	122066749,122070168,122070589,122074169,122075541,122076083	0.925000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	94070195	94070241	94070205	+	High_confidence	8	11	69	3.089823	4.258635	chr1	94070114	94070217	DNA|hAT|MamRep1894	+	chr1	94070187	94086278	MSTRG.1717.2	+	94070187,94083892	94070560,94086278	0.913043
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chrX	13303406	13303409	13303406	-	High_confidence	38	44	75	3.358503	4.592291	chrX	13303238	13303604	LTR|ERVL-MaLR|THE1B	-	chrX	13266047	13303392	LINC02154|ENST00000412485.1	-	13266047,13287428,13303319	13267335,13287564,13303392	0.893333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	65430368	65430776	65430775	+	RAMPAGE_only	40	43	629	28.166648	6.079516	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65423637	65445556	MSTRG.6443.9	+	65423637,65424975,65437252	65424864,65437175,65445556	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	5772217	5772218	5772217	+	High_confidence	9	9	9	0.403020	2.947703	chr17	5771061	5772733	LTR|ERV1|LTR12C	+	chr17	5772233	5930696	AC007846.1|ENST00000563763.5	+	5772233,5837180,5888756,5929779	5773027,5837216,5888830,5930696	0.888889
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	123060137	123060256	123060168	-	High_confidence	60	68	878	39.316879	5.808731	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.662870
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	71417011	71417058	71417057	+	RAMPAGE_only	5	6	16	0.716481	3.773557	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.875000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	152412488	152412498	152412488	-	High_confidence	3	3	10	0.447800	3.169925	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.800000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	136667228	136667230	136667228	+	RAMPAGE_only	5	8	9	0.403020	2.500000	chr9	136667168	136667252	SINE|MIR|MIR3	-	chr9	136665791	136672678	EGFL7|ENST00000371698.3	+	136665791,136668240,136668556,136669605,136669913,136670168,136670949,136671925,136672263	136665817,136668362,136668673,136669721,136670009,136670330,136671014,136672088,136672678	0.555556
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	134711494	134711504	134711494	+	RAMPAGE_only	3	3	12	0.537361	3.022055	chr7	134711275	134711628	LTR|ERVL|MLT2D	+	chr7	134744251	134968402	CALD1|ENST00000417172.5	+	134744251,134843883,134867692,134928753,134932987,134941091,134947507,134950373,134958068,134958208,134959973,134960532,134965305,134968339	134744363,134843971,134867804,134928900,134933390,134941237,134947769,134950514,134958112,134958290,134960111,134960628,134965386,134968402	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	44829348	44829349	44829348	-	RAMPAGE_only	17	18	20	0.895601	3.005315	chr7	44829318	44829620	SINE|Alu|AluSq2	+	chr7	44826790	44848077	H2AFV|ENST00000222690.10	-	44826790,44835528,44840898,44843276,44847968	44830163,44835658,44841012,44843354,44848077	0.950000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	131117479	131117525	131117515	+	RAMPAGE_only	11	11	23	1.029941	3.567040	chr9	131117448	131117590	SINE|MIR|MIR	-	chr9	131111401	131120438	AIF1L|ENST00000372301.2	+	131111401,131114576,131117755,131120234	131111663,131114618,131117918,131120438	0.782609
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	91462063	91462211	91462210	-	High_confidence	5	8	69	3.089823	4.639190	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.985507
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	41545191	41545192	41545191	+	RAMPAGE_only	558	563	570	25.524625	7.816167	chr19	41544577	41545607	LTR|ERVK|LTR5A	+	chr19	41549517	41586844	CEACAM21|NM_001288773.2	+	41549517,41564681,41577199,41579269,41584346,41585442,41585839,41586463	41549552,41565056,41577559,41579628,41584443,41585495,41585871,41586844	0.510526
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr21	41430557	41430590	41430585	+	RAMPAGE_only	8	9	27	1.209061	4.209867	chr21	41429929	41430715	DNA|hAT-Charlie|Charlie2b	+	chr21	41431713	41459214	MX1|ENST00000288383.10	+	41431713,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41432175,41435960,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	0.962963
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	80059918	80059939	80059932	+	High_confidence	74	84	298	13.344453	5.146459	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.993289
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr9	120471781	120471794	120471781	-	RAMPAGE_only	3	3	7	0.313460	2.584963	chr9	120471770	120471851	LINE|L2|L2	+	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.571429
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	76668549	76668561	76668549	-	RAMPAGE_only	12	12	23	1.029941	4.004886	chr11	76668182	76668643	LINE|L2|L2a	+	chr11	76657523	76670000	LRRC32|NM_005512.2	-	76657523,76665870,76669761	76661508,76665958,76670000	0.826087
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr12	111450015	111450288	111450015	+	RAMPAGE_only	52	54	209	9.359029	5.367481	chr12	111449926	111450222	SINE|Alu|AluSq2	-	chr12	111434861	111451623	SH2B3|NM_001291424.1	+	111434861,111446752,111446941,111447124,111447329,111447655,111447982	111435027,111446854,111447033,111447219,111447544,111447827,111451623	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	66715226	66715227	66715226	-	RAMPAGE_only	6	6	8	0.358240	2.500000	chr11	66714958	66715210	DNA|hAT-Charlie|Charlie10	-	chr11	66685251	66721240	SPTBN2|ENST00000529997.5	-	66685251,66686993,66687426,66687867,66688003,66688168,66688652,66689095,66689804,66690038,66691283,66692535,66692969,66693185,66693771,66694138,66696276,66698638,66698991,66699405,66700525,66701583,66704597,66705683,66707515,66708140,66708901,66710581,66710916,66713630,66714090,66714315,66715221,66715829,66721083	66686440,66687167,66687647,66687918,66688079,66688311,66688849,66689180,66689943,66690283,66691658,66692740,66693100,66693446,66693861,66694363,66696540,66698785,66699082,66699608,66701282,66701721,66705468,66705837,66707818,66708299,66709019,66710769,66711029,66713746,66714171,66714407,66715395,66715981,66721240	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	194632752	194632771	194632752	+	High_confidence	13	17	32	1.432961	3.800182	chr3	194632668	194632869	SINE|MIR|MIR	-	chr3	194632922	194645401	AC046143.1|ENST00000447139.1	+	194632922,194644674	194633167,194645401	0.968750
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	90251203	90251205	90251203	+	High_confidence	24	47	48	2.149442	5.088779	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.583333
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	46903925	46904075	46904073	-	RAMPAGE_only	31	51	117	5.239265	5.564402	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.991453
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	19094097	19094133	19094132	-	High_confidence	5	5	25	1.119501	3.619471	chr1	19094127	19094245	LINE|RTE-BovB|MamRTE1	+	chr1	19092732	19093440	UBR4|ENST00000492606.1	-	19092732,19093312	19092918,19093440	0.800000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	1597771	1597789	1597772	-	RAMPAGE_only	4	7	15	0.671701	3.235926	chr19	1597355	1597872	LTR|ERVL-MaLR|MLT1F	+	chr19	1597154	1605484	UQCR11|NM_006830.3	-	1597154,1599411,1605359	1598215,1599560,1605484	0.866667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr2	227534913	227534949	227534913	+	RAMPAGE_only	5	5	14	0.626921	3.235926	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.928571
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	75376229	75376269	75376268	-	RAMPAGE_only	3	4	10	0.447800	2.921928	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.800000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr14	51554667	51554696	51554667	+	RAMPAGE_only	12	13	47	2.104662	4.894598	chr14	51553917	51555014	LINE|L1|L1MC3	+	chr14	51489136	51730459	FRMD6|ENST00000356218.8	+	51489136,51570347,51689690,51698141,51701055,51702511,51704748,51708077,51711530,51712482,51715324,51720054,51721948,51725778,51727744	51489420,51570410,51689935,51698232,51701135,51702588,51704935,51708233,51711596,51712551,51715499,51720390,51722080,51725870,51730459	0.574468
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr20	35307058	35307086	35307058	-	High_confidence	4	4	19	0.850821	3.683542	chr20	35306926	35307046	SINE|MIR|MIR3	-	chr20	35303453	35307055	UQCC1|ENST00000496812.5	-	35303453,35306665,35306984	35304069,35306779,35307055	0.842105
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr7	6590236	6590293	6590246	+	High_confidence	6	6	31	1.388181	4.106891	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.612903
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	1655409	1655478	1655410	-	RAMPAGE_only	11	22	62	2.776363	5.316942	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	0.983871
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr4	140676986	140677028	140676995	-	RAMPAGE_only	2	3	12	0.537361	3.027169	chr4	140676903	140676948	LINE|CR1|X7A_LINE	-	chr4	140620764	140756120	TBC1D9|ENST00000442267.2	-	140620764,140624115,140624313,140627440,140628299,140633947,140639085,140639329,140657096,140657526,140659587,140661892,140668916,140669633,140670719,140676893,140678941,140679614,140686343,140701503,140755915	140622917,140624219,140624388,140627527,140628365,140634188,140639154,140639428,140657226,140657812,140659705,140662107,140669067,140669804,140670926,140677101,140679203,140679843,140686462,140701614,140756120	0.916667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr3	52615426	52615444	52615426	-	High_confidence	3	4	13	0.582141	3.418296	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.846154
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	17686045	17686061	17686056	+	High_confidence	5	9	20	0.895601	3.997670	chr17	17685599	17686175	LINE|L2|L2b	+	chr17	17686077	17810689	MSTRG.15568.4	+	17686077,17724027,17792932,17803755,17809389,17809969	17686188,17724159,17798513,17803849,17809439,17810689	0.500000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	149509885	149509931	149509885	-	RAMPAGE_only	26	27	134	6.000526	4.788980	chr5	149509722	149509839	SINE|Alu|AluJb	-	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.985075
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr16	30354620	30354684	30354679	-	High_confidence	12	12	33	1.477741	4.354852	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	75879161	75879163	75879161	+	RAMPAGE_only	9	12	15	0.671701	3.182006	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75868950	75899577	UBE2Q2|ENST00000567921.1	+	75868950,75873427,75883365,75896994,75899426	75869010,75873568,75883424,75897061,75899577	0.800000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr17	59892716	59892746	59892716	-	High_confidence	9	10	33	1.477741	4.601410	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.727273
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr19	44626556	44626566	44626556	+	RAMPAGE_only	9	12	17	0.761261	3.077820	chr19	44626362	44626615	LINE|L2|L2b	-	chr19	44613629	44636781	IGSF23|ENST00000402988.5	+	44613629,44623706,44627419,44635400,44636418	44613770,44623972,44627573,44635465,44636781	0.941176
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	38881696	38881741	38881696	+	RAMPAGE_only	7	7	16	0.716481	3.452820	chr5	38881676	38881753	SINE|tRNA-Deu|AmnSINE2	+	chr5	38845998	38935641	OSMR|ENST00000274276.7	+	38845998,38869031,38876200,38881592,38883826,38885348,38886038,38903881,38904352,38917545,38918839,38921614,38923149,38924421,38925203,38931882,38932462,38932871	38846387,38869117,38876373,38881764,38884111,38885484,38886190,38904024,38904503,38917622,38919062,38921794,38923254,38924595,38925371,38931964,38932535,38935641	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr15	71779451	71779472	71779471	+	RAMPAGE_only	3	3	7	0.313460	2.521641	chr15	71779394	71779591	LINE|CR1|L3	+	chr15	71547201	71783383	THSD4|NM_001286429.1	+	71547201,71660529,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71771063,71777231	71547481,71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71771208,71783383	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	201588617	201588622	201588621	+	RAMPAGE_only	4	5	8	0.358240	2.807355	chr1	201588641	201588848	LINE|L1|L1MB7	+	chr1	201622884	201623610	NAV1|ENST00000593583.1	+	201622884	201623610	0.875000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	176162925	176162938	176162937	-	RAMPAGE_only	5	9	21	0.940381	3.821928	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.571429
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	65434368	65434800	65434583	+	RAMPAGE_only	14	14	285	12.762313	6.509193	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65423637	65445556	MSTRG.6443.9	+	65423637,65424975,65437252	65424864,65437175,65445556	0.996491
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr20	3208665	3208676	3208675	+	High_confidence	8	9	14	0.626921	3.521641	chr20	3208670	3208727	DNA|hAT-Charlie|MER5A	-	chr20	3209500	3219091	ITPA|ENST00000609835.5	+	3209500,3213257,3213984,3215280,3218516	3209617,3213383,3214058,3215312,3219091	0.785714
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr20	37298760	37298761	37298760	+	RAMPAGE_only	15	17	19	0.850821	3.215841	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr5	150640005	150640051	150640038	+	High_confidence	34	37	178	7.970848	6.260389	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150639970	150659215	MSTRG.30761.7	+	150639970,150647943,150656403	150640425,150650303,150659215	0.983146
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr8	103153138	103153143	103153138	+	High_confidence	3	3	11	0.492580	3.321928	chr8	103153056	103153153	LTR|ERVL|LTR16	-	chr8	103153138	103228132	BAALC|ENST00000519507.5	+	103153138,103212918,103227988	103153310,103213085,103228132	0.909091
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	155013628	155013646	155013645	+	High_confidence	4	7	13	0.582141	3.546594	chr6	155013693	155013753	DNA|TcMar-Tigger|Tigger19a	+	chr6	155013645	155129479	TIAM2|ENST00000538270.5	+	155013645,155090288,155127489,155129217	155013823,155090379,155127600,155129479	0.538462
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr1	158098185	158098256	158098237	+	RAMPAGE_only	3	3	11	0.492580	3.277613	chr1	158097988	158098249	DNA|TcMar-Tigger|Tigger19b	+	chr1	158086679	158100262	KIRREL1|ENST00000368172.1	+	158086679,158087754,158088005,158088326,158089453,158089717,158091357,158093338,158093622,158094312,158094643	158086746,158087860,158088154,158088454,158089628,158089818,158091556,158093446,158093762,158094390,158100262	1.000000
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr6	11111726	11111727	11111726	-	High_confidence	58	60	60	2.686803	4.504027	chr6	11108229	11111700	LTR|ERV1|MER50-int	-	chr6	11102488	11111732	ERVFRD-1|ENST00000472091.1	-	11102488,11111676	11105630,11111732	0.966667
glomerular_endothelial_cell_female_fetal_22_weeks_and_male_fetal_22_weeks	chr11	64226142	64226180	64226158	-	High_confidence	62	67	445	19.927120	6.954968	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.961798
GM12878	chr4	39032918	39032938	39032920	-	High_confidence	25	35	73	2.222284	5.325079	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	38993734	39032922	TMEM156|ENST00000344606.6	-	38993734,38998723,39032225,39032641	38993998,38998909,39032443,39032922	0.876712
GM12878	chr1	30745896	30745908	30745896	-	High_confidence	2	2	7	0.213096	2.807355	chr1	30745778	30745999	SINE|MIR|MIRb	-	chr1	30733888	30746229	LAPTM5|ENST00000464569.1	-	30733888,30735172,30737603,30738939,30739808,30741639,30742455,30745917	30733917,30735265,30737699,30739062,30739937,30741716,30742549,30746229	1.000000
GM12878	chr6	136720836	136720837	136720836	-	RAMPAGE_only	12	12	15	0.456634	3.182006	chr6	136720782	136721078	SINE|Alu|AluJr	-	chr6	136557046	136792518	MAP3K5|ENST00000359015.4	-	136557046,136558799,136561532,136562502,136567630,136580300,136583554,136592172,136592436,136601021,136601801,136605208,136611281,136613119,136614158,136622847,136637324,136639542,136642519,136650983,136656306,136659218,136669282,136694139,136695950,136697218,136698488,136705109,136720449,136791709	136557818,136558876,136561645,136562615,136567874,136580406,136583740,136592341,136592614,136601042,136601979,136605366,136611387,136613256,136614286,136622981,136637406,136639638,136642569,136651091,136656460,136659378,136669395,136694310,136696057,136697387,136698682,136705133,136720589,136792518	0.733333
GM12878	chr17	18318515	18318537	18318517	+	RAMPAGE_only	3	5	13	0.395749	3.188722	chr17	18318395	18318703	SINE|Alu|AluSq10	-	chr17	18315309	18328055	SMCR8|ENST00000406438.4	+	18315309,18322616	18318149,18328055	0.923077
GM12878	chr4	10723012	10723027	10723012	-	RAMPAGE_only	3	3	7	0.213096	2.584963	chr4	10722767	10723054	SINE|Alu|AluSz6	+	chr4	10486394	10684865	CLNK|ENST00000226951.10	-	10486394,10501255,10507958,10513463,10520790,10525840,10528075,10532255,10540493,10542021,10542254,10558406,10564670,10566008,10571740,10584926,10597977,10667858,10684667	10490613,10501411,10508036,10513597,10520831,10525922,10528094,10532283,10540604,10542041,10542280,10558452,10564777,10566150,10571778,10584955,10598049,10667911,10684865	0.571429
GM12878	chr1	206052882	206052891	206052890	+	High_confidence	957	965	1580	48.098758	6.351350	chr1	206052518	206053000	LTR|ERV1|LTR2B	+	chr1	206052844	206061913	MSTRG.2206.8	+	206052844,206061344,206061661	206060449,206061397,206061913	0.989241
GM12878	chr19	46350227	46350264	46350259	+	RAMPAGE_only	15	17	76	2.313611	4.328559	chr19	46350042	46350382	LINE|L2|L2	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.973684
GM12878	chr13	60418064	60418073	60418072	+	RAMPAGE_only	11	11	24	0.730614	4.243300	chr13	60418111	60418568	LINE|L2|L2c	+	chr13	60427305	60573870	MSTRG.6554.8	+	60427305,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573612	60427528,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573870	0.791667
GM12878	chr3	183169631	183169632	183169631	-	High_confidence	13	13	13	0.395749	3.392747	chr3	183169473	183169827	LTR|ERVL-MaLR|THE1A	-	chr3	183122212	183169574	MSTRG.17919.1	-	183122212,183135716,183140537,183152374,183153681,183162606,183169549	183124214,183135887,183140595,183152503,183154391,183162730,183169574	0.769231
GM12878	chr5	157597999	157598016	157598015	-	RAMPAGE_only	4	4	8	0.243538	2.807355	chr5	157597774	157598070	SINE|Alu|AluSx	+	chr5	157477303	157575823	ADAM19|NM_033274.4	-	157477303,157481790,157488264,157489101,157490309,157491614,157491834,157492972,157494686,157496893,157499572,157502802,157505668,157507055,157509300,157513433,157518822,157519838,157530806,157537912,157564372,157570894,157575602	157481002,157481943,157488489,157489186,157490454,157491723,157491912,157493177,157494795,157497089,157499662,157502980,157505808,157507140,157509467,157513505,157518888,157520031,157530883,157537991,157564443,157570980,157575823	0.750000
GM12878	chr17	82081606	82081607	82081606	-	High_confidence	11	11	16	0.487076	3.323231	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.625000
GM12878	chr22	17777554	17777586	17777554	+	High_confidence	10	10	40	1.217690	4.573990	chr22	17777408	17777764	LTR|ERVL-MaLR|MLT1B	+	chr22	17777321	17779481	LINC00528|ENST00000600723.1	+	17777321	17779481	0.950000
GM12878	chr5	33400919	33400924	33400923	+	High_confidence	6	8	11	0.334865	3.459432	chr5	33400728	33401119	LTR|ERVL-MaLR|THE1D	+	chr5	33400886	33469539	MSTRG.19144.1	+	33400886,33441045,33445323,33448540,33453288,33454944,33455586,33456001,33456148,33457256,33458565,33459694,33460901,33461157,33461666,33461905,33462098,33463752,33466870,33467559	33400985,33441143,33445404,33448731,33453412,33455066,33455704,33456066,33456227,33457403,33458664,33459861,33461064,33461295,33461744,33462006,33462203,33463825,33466985,33469539	0.909091
GM12878	chr16	11782564	11782597	11782569	-	High_confidence	26	26	100	3.044225	5.620309	chr16	11782466	11782586	LINE|L2|L2c	+	chr16	11750585	11782552	ZC3H7A|ENST00000396516.6	-	11750585,11752668,11756236,11758430,11761405,11761909,11762670,11763477,11765052,11765488,11767416,11768314,11769030,11770782,11774235,11774979,11776319,11776451,11776750,11779165,11781424,11782286	11751506,11752832,11756370,11758539,11761511,11762043,11762747,11763659,11765153,11765685,11767578,11768501,11769095,11770987,11774519,11775013,11776358,11776532,11776909,11779363,11781464,11782552	0.910000
GM12878	chr4	47493849	47493863	47493862	+	RAMPAGE_only	5	7	17	0.517518	3.750000	chr4	47493672	47493882	DNA|hAT-Charlie|MER5A	+	chr4	47485392	47593486	ATP10D|NM_020453.3	+	47485392,47512503,47515475,47523011,47525556,47535508,47535901,47536436,47536685,47546623,47554725,47557663,47558922,47560948,47563580,47568836,47572153,47572871,47576772,47580397,47581959,47587018,47591041	47485519,47512830,47515670,47523216,47525642,47535615,47536033,47536564,47536938,47546862,47554914,47558273,47559029,47561075,47563765,47569146,47572230,47572997,47576973,47580478,47582064,47587206,47593486	0.647059
GM12878	chr13	33818329	33818375	33818374	+	High_confidence	5	5	32	0.974152	4.577820	chr13	33818361	33818761	LINE|L2|L2a	-	chr13	33818068	33837507	RFC3|NM_002915.3	+	33818068,33821131,33823916,33825788,33829835,33830718,33831255,33835147,33836103	33818265,33821269,33823984,33825886,33830017,33830855,33831354,33835217,33837507	0.781250
GM12878	chr22	49880621	49880627	49880626	+	RAMPAGE_only	4	5	9	0.273980	2.725481	chr22	49879920	49880662	LINE|L1|L1MEc	-	chr22	49853848	49890078	ZBED4|NM_014838.2	+	49853848,49883333	49853989,49890078	1.000000
GM12878	chr4	70993073	70993074	70993073	+	High_confidence	11	11	11	0.334865	3.277613	chr4	70992983	70993102	SINE|MIR|MIR	+	chr4	70993438	71030914	DCK|ENST00000286648.9	+	70993438,70998066,71022366,71023558,71025815,71026664,71029351	70993926,70998182,71022560,71023706,71025931,71026755,71030914	1.000000
GM12878	chr17	47278664	47278673	47278664	+	RAMPAGE_only	8	9	21	0.639287	3.646439	chr17	47278655	47278962	DNA|hAT-Charlie|MER1B	+	chr17	47253896	47344292	AC068234.1|ENST00000560629.1	+	47253896,47274418,47283353,47284442,47286259,47287069,47289680,47290184,47290953,47292138,47299307,47300477,47302720,47307470,47328268,47335195,47341920,47344161	47253940,47274504,47283549,47284695,47286422,47287231,47289776,47290274,47291088,47292568,47299530,47300578,47302840,47307637,47328383,47335356,47342032,47344292	0.952381
GM12878	chr14	50031027	50031028	50031027	-	RAMPAGE_only	8	8	10	0.304423	2.921928	chr14	50030867	50031201	LTR|ERVL-MaLR|THE1B	-	chr14	50007317	50039088	LINC01588|ENST00000603474.1	-	50007317,50010933,50039014	50007419,50011026,50039088	0.900000
GM12878	chr21	25421441	25421486	25421441	-	RAMPAGE_only	20	27	95	2.892014	5.424455	chr21	25421048	25421524	LTR|ERVL|LTR16E1	-	chr21	25385819	25431701	LINC00158|NR_024027.2	-	25385819,25420707,25424553,25429765,25431177	25386338,25420800,25424649,25430009,25431701	0.705263
GM12878	chr8	127288419	127288464	127288419	+	RAMPAGE_only	6	7	43	1.309017	5.065572	chr8	127288417	127288550	LINE|L2|L2b	+	chr8	127292811	127339435	PCAT1|ENST00000642795.1	+	127292811,127301358,127311519,127322072,127339280	127292963,127301470,127311716,127322226,127339435	0.511628
GM12878	chr2	218398232	218398233	218398232	+	High_confidence	34	36	40	1.217690	4.859641	chr2	218398216	218398343	SINE|MIR|MIRb	+	chr2	218398337	218405941	CTDSP1|NM_001206878.1	+	218398337,218401563,218402113,218402348,218403034,218403231,218404296	218398479,218401712,218402215,218402405,218403127,218403417,218405941	0.500000
GM12878	chr8	85187677	85187701	85187677	+	High_confidence	8	8	31	0.943710	4.415061	chr8	85186969	85188500	LINE|L1|L1M1	-	chr8	85187674	85214518	E2F5|NM_001083589.1	+	85187674,85202146,85203093,85206176,85207424,85209141,85212156,85213752	85187796,85202256,85203255,85206220,85207489,85209409,85212204,85214518	0.774194
GM12878	chr15	92914930	92914974	92914959	+	High_confidence	4	6	23	0.700172	4.349649	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.739130
GM12878	chr14	97545691	97545713	97545703	-	High_confidence	15	16	44	1.339459	4.799896	chr14	97545378	97545859	DNA|hAT-Charlie|MER1A	-	chr14	97539053	97545731	MSTRG.7472.1	-	97539053,97540068,97545554	97539877,97542366,97545731	0.704545
GM12878	chr16	57487270	57487322	57487270	-	High_confidence	7	7	31	0.943710	4.284684	chr16	57487255	57487437	DNA|hAT-Charlie|MER5A	+	chr16	57475208	57487322	DOK4|ENST00000569538.5	-	57475208,57475505,57475849,57479441,57487245	57475219,57475620,57475957,57479688,57487322	0.935484
GM12878	chr19	3063103	3063137	3063103	-	High_confidence	3	3	10	0.304423	2.921928	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3063107	AES|ENST00000221561.12	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3063107	1.000000
GM12878	chr12	46266515	46266559	46266534	-	High_confidence	4	4	18	0.547961	3.734522	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.666667
GM12878	chr12	26723426	26723427	26723426	-	RAMPAGE_only	6	6	9	0.273980	2.750000	chr12	26723156	26723378	DNA|hAT-Charlie|Charlie18a	-	chr12	26716161	26832786	ITPR2|ENST00000545235.1	-	26716161,26722396,26724655,26725649,26832689	26716242,26722555,26724742,26725765,26832786	0.666667
GM12878	chr3	50226714	50226728	50226714	+	High_confidence	37	40	75	2.283169	4.130711	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	0.920000
GM12878	chr4	70663268	70663273	70663268	-	RAMPAGE_only	6	6	10	0.304423	3.169925	chr4	70663216	70663491	SINE|Alu|AluSz	-	chr4	70655540	70666631	JCHAIN|NM_144646.3	-	70655540,70657210,70662091,70666426	70656539,70657291,70662215,70666631	0.900000
GM12878	chr19	13117014	13117015	13117014	+	High_confidence	6	6	6	0.182654	2.584963	chr19	13117024	13117215	SINE|MIR|MIR	+	chr19	13116806	13141031	MSTRG.12509.2	+	13116806,13117993,13135199,13136231,13137270,13137477,13138146	13116935,13118131,13136153,13136405,13137376,13137575,13141031	0.500000
GM12878	chr7	150433722	150433750	150433729	+	High_confidence	232	261	879	26.758739	7.185063	chr7	150433631	150433743	LINE|CR1|CR1_Mam	-	chr7	150433493	150448140	MSTRG.22647.3	+	150433493,150435029,150442548,150447075	150433829,150435370,150446889,150448140	0.767918
GM12878	chr16	80892517	80892518	80892517	-	High_confidence	7	7	7	0.213096	2.521641	chr16	80892421	80892788	LTR|ERVL-MaLR|THE1B	-	chr16	80830530	80892560	ARLNC1|ENST00000563626.1	-	80830530,80837931,80840118,80892504	80830757,80838045,80840222,80892560	0.571429
GM12878	chr12	6493553	6493590	6493553	-	High_confidence	12	14	42	1.278575	4.900116	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	0.976190
GM12878	chr3	106253065	106253066	106253065	-	RAMPAGE_only	8	8	8	0.243538	2.750000	chr3	106252441	106253080	LINE|L1|L1PA15	+	chr3	106246984	106256075	MSTRG.17407.1	-	106246984	106256075	0.625000
GM12878	chr2	55618850	55618889	55618850	-	High_confidence	6	8	17	0.517518	3.875000	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.823529
GM12878	chr20	48783940	48783979	48783940	-	RAMPAGE_only	11	11	54	1.643882	5.005946	chr20	48783811	48784587	DNA|TcMar-Tigger|Tigger18a	+	chr20	48624251	48827883	PREX1|ENST00000371941.3	-	48624251,48627547,48627860,48629448,48630727,48632276,48632495,48634675,48636462,48637710,48639765,48642167,48642406,48644408,48645850,48649299,48649995,48650893,48651395,48652585,48653360,48655289,48657039,48658135,48659918,48666282,48676192,48679359,48679650,48681234,48688656,48690946,48692671,48700752,48708259,48726289,48734545,48745024,48747808,48827641	48625927,48627615,48627963,48629621,48630794,48632391,48632639,48634775,48636683,48637752,48639894,48642258,48642489,48644497,48646057,48649576,48650206,48651055,48651583,48652706,48653497,48655375,48657188,48658228,48660061,48666355,48676268,48679409,48679754,48681335,48688804,48691096,48692790,48700886,48708421,48726391,48734650,48745147,48747880,48827883	0.740741
GM12878	chr12	14989523	14989547	14989523	-	RAMPAGE_only	4	4	11	0.334865	2.663533	chr12	14989315	14989890	LINE|L1|L1PA12	+	chr12	14942014	14961770	ARHGDIB|NM_001175.6	-	14942014,14944775,14947872,14949801,14950531,14961536	14942721,14944839,14947949,14949885,14950724,14961770	0.727273
GM12878	chr6	41705782	41705826	41705825	-	High_confidence	38	42	153	4.657665	5.857960	chr6	41705810	41705860	DNA|hAT-Tip100|MamTip2	+	chr6	41687909	41705940	TFEB|ENST00000419574.5	-	41687909,41689730,41690662,41691000,41705646	41688028,41689811,41690917,41691235,41705940	0.954248
GM12878	chr19	54448846	54448848	54448846	-	High_confidence	12	17	25	0.761056	4.323856	chr19	54448651	54448966	SINE|Alu|AluSg	+	chr19	54445035	54448602	LENG8-AS1|ENST00000416022.1	-	54445035,54448164	54445179,54448602	0.880000
GM12878	chr2	47695787	47695797	47695796	+	High_confidence	16	19	29	0.882825	3.512479	chr2	47695601	47695914	SINE|Alu|AluY	-	chr2	47695815	47757793	MSH6|ENST00000454137.5	+	47695815,47708208,47737390,47757688	47696097,47708430,47737506,47757793	1.000000
GM12878	chr14	71498551	71498571	71498570	+	RAMPAGE_only	4	4	8	0.243538	2.500000	chr14	71498548	71498682	DNA|hAT-Charlie|Charlie23a	+	chr14	71321390	71587969	SIPA1L1|ENST00000557151.5	+	71321390,71512742,71528698,71529311,71587570	71321531,71512845,71528740,71529370,71587969	0.750000
GM12878	chr16	726883	726910	726883	-	High_confidence	3	3	26	0.791499	3.353270	chr16	726845	726893	LINE|L2|L2b	-	chr16	722587	726880	CCDC78|ENST00000466708.5	-	722587,722921,723094,723856,724105,724321,724910,725077,725236,725445,725793,725965,726614	722789,723022,723161,723936,724205,724806,724989,725145,725293,725580,725880,726085,726880	0.961538
GM12878	chr19	18227905	18227906	18227905	-	RAMPAGE_only	54	54	54	1.643882	4.771195	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
GM12878	chr8	6732041	6732060	6732041	+	RAMPAGE_only	3	6	11	0.334865	3.277613	chr8	6731773	6732121	LTR|ERVL-MaLR|MLT1B	-	chr8	6738375	6757186	AGPAT5|ENST00000530716.1	+	6738375,6741660,6747669,6755050,6757162	6738550,6741751,6747828,6755174,6757186	0.636364
GM12878	chr1	78295503	78295504	78295503	+	RAMPAGE_only	6	6	6	0.182654	2.584963	chr1	78295314	78295657	LTR|ERVL-MaLR|THE1A	+	chr1	78229621	78369464	MGC27382|ENST00000413519.1	+	78229621,78250183,78251493,78342525,78368536,78369282	78229729,78250373,78251877,78342640,78368727,78369464	0.500000
GM12878	chr20	37365206	37365207	37365206	+	RAMPAGE_only	6	7	8	0.243538	2.521641	chr20	37365085	37365295	SINE|MIR|MIRb	-	chr20	37382603	37405432	SRC|ENST00000358208.8	+	37382603,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.750000
GM12878	chr11	58578102	58578168	58578102	-	High_confidence	7	8	28	0.852383	4.450212	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.678571
GM12878	chr4	38078765	38078788	38078772	+	RAMPAGE_only	13	13	51	1.552555	4.685939	chr4	38078433	38078801	LTR|ERVL-MaLR|MLT1A	+	chr4	38020676	38137743	TBC1D1|ENST00000510573.6	+	38020676,38021585,38027787,38035587,38044361,38045816,38049617,38053105,38054198,38089931,38095928,38102998,38115709,38118032,38124961,38133083,38137134	38020695,38021718,38027879,38035698,38044490,38045903,38049898,38053225,38054338,38090117,38096090,38103157,38115954,38118192,38125131,38133257,38137743	0.921569
GM12878	chr13	19239626	19239648	19239626	-	RAMPAGE_only	9	9	37	1.126363	4.270910	chr13	19239586	19239800	LTR|ERVL-MaLR|MLT1F	-	chr13	19201636	19227432	PSPC1P1|ENST00000442352.1	-	19201636,19204339,19208482,19219709,19227247	19201822,19204509,19208540,19219775,19227432	0.729730
GM12878	chr5	139526190	139526238	139526237	+	High_confidence	111	113	202	6.149335	6.279530	chr5	139525865	139526346	LTR|ERV1|LTR2B	+	chr5	139526430	139626855	UBE2D2|ENST00000511725.5	+	139526430,139600371,139614585,139614696,139614860,139623367,139626755	139526612,139600435,139614617,139614774,139614966,139623461,139626855	0.584158
GM12878	chr15	44882574	44882629	44882611	-	High_confidence	180	190	698	21.248692	6.674439	chr15	44877921	44882678	LTR|ERV1|HUERS-P1-int	-	chr15	44827059	44882610	MSTRG.7969.5	-	44827059,44828449,44831528,44832326,44835181,44839370,44847397,44850353,44861784,44881494,44882317	44827221,44828571,44831703,44832392,44835300,44839530,44847562,44850387,44862311,44881605,44882610	0.805158
GM12878	chr2	70161197	70161223	70161222	-	RAMPAGE_only	3	4	8	0.243538	2.521641	chr2	70161219	70161385	SINE|MIR|MIRb	+	chr2	70149897	70181995	C2orf42|ENST00000420306.1	-	70149897,70160624,70165091,70165527,70169556,70175672,70179531,70181162	70150564,70160787,70165192,70165635,70169661,70175777,70179642,70181995	0.875000
GM12878	chr1	36023474	36023516	36023474	-	High_confidence	57	65	126	3.835724	5.635547	chr1	36023368	36023764	LTR|ERV1|MER57B2	-	chr1	36014636	36023513	MSTRG.650.1	-	36014636	36023513	0.841270
GM12878	chr15	75007499	75007505	75007499	+	RAMPAGE_only	3	3	10	0.304423	2.725481	chr15	75007388	75007556	SINE|Alu|AluJo	-	chr15	75011806	75019341	SCAMP5|ENST00000567529.1	+	75011806,75012676,75017869,75018393,75018788	75011846,75012805,75017971,75018535,75019341	0.500000
GM12878	chr14	32402135	32402136	32402135	+	RAMPAGE_only	16	16	16	0.487076	2.852217	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32433163	32439032	AKAP6|ENST00000554449.1	+	32433163,32438673	32433817,32439032	1.000000
GM12878	chr6	15356023	15356042	15356023	+	RAMPAGE_only	5	5	11	0.334865	2.913977	chr6	15355910	15356457	LINE|L1|L1MB7	-	chr6	15248854	15522042	JARID2|NM_001267040.1	+	15248854,15374116,15410223,15452005,15468541,15487306,15496131,15500906,15504499,15507135,15507345,15508339,15511295,15512207,15512914,15513238,15517160,15520068	15248964,15374252,15410365,15452175,15468718,15487542,15497170,15501409,15504592,15507254,15507416,15508454,15511401,15512390,15513045,15513422,15517268,15522042	0.818182
GM12878	chr19	48994931	48994932	48994931	+	RAMPAGE_only	16	18	18	0.547961	3.197160	chr19	48994647	48994932	SINE|Alu|AluSz	+	chr19	48993909	49009882	RUVBL2|ENST00000593570.5	+	48993909,48999318,49001348,49003278,49004276,49007017,49007301,49009775	48993923,48999373,49001590,49003334,49004418,49007147,49007368,49009882	0.944444
GM12878	chr12	70468078	70468126	70468078	+	High_confidence	36	38	166	5.053414	6.438642	chr12	70467961	70468294	LTR|ERV1|MER61A	+	chr12	70468084	70543040	AC025569.1|ENST00000548687.5	+	70468084,70510211,70510407,70513184,70520198,70520785,70522523,70527674,70538049	70468327,70510284,70510577,70513227,70520267,70520928,70522630,70527738,70543040	0.560241
GM12878	chr3	187027819	187027830	187027828	+	RAMPAGE_only	12	22	37	1.126363	4.822001	chr3	187027772	187028202	LINE|L2|L2	-	chr3	187025482	187042977	ST6GAL1|ENST00000446170.1	+	187025482,187038394,187038741,187042653	187025517,187038491,187038873,187042977	0.513514
GM12878	chr2	9473632	9473633	9473632	+	High_confidence	8	8	12	0.365307	2.594907	chr2	9473556	9473708	DNA|hAT-Charlie|MER5B	-	chr2	9473657	9484548	IAH1|ENST00000496603.5	+	9473657,9478221,9481285,9484431	9473899,9478370,9481447,9484548	0.750000
GM12878	chr20	3795750	3795823	3795788	+	High_confidence	70	75	645	19.635253	6.109053	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.996899
GM12878	chr17	78632016	78632064	78632016	-	High_confidence	17	17	46	1.400344	4.833014	chr17	78632006	78632221	DNA|hAT-Charlie|MER1A	+	chr17	78617376	78632011	LINC02081|ENST00000590023.6	-	78617376,78621666,78624191,78630031,78631989	78617626,78621733,78624315,78630430,78632011	0.739130
GM12878	chr21	42062852	42062880	42062879	+	High_confidence	3	3	10	0.304423	3.121928	chr21	42062850	42063274	LTR|ERVL-MaLR|MLT1C	-	chr21	42062958	42142995	UMODL1|NM_001199528.2	+	42062958,42076004,42084083,42085290,42088293,42090297,42098925,42102165,42103867,42109561,42110879,42111505,42113572,42115872,42119110,42121086,42122830,42126344,42127005,42127671,42129712,42137438,42142095	42063214,42076247,42084245,42085412,42088480,42090438,42099180,42102278,42104087,42109699,42111121,42111710,42113830,42115985,42119324,42121224,42123150,42126490,42127242,42127831,42129797,42137641,42142995	0.700000
GM12878	chr16	31095989	31096010	31095996	-	High_confidence	2	4	10	0.304423	2.947703	chr16	31095736	31096063	LINE|L2|L2	+	chr16	31091174	31095980	VKORC1|ENST00000498155.1	-	31091174,31093311,31095388	31091342,31093421,31095980	0.900000
GM12878	chr6	6587294	6587402	6587361	-	High_confidence	394	440	1668	50.777676	7.838173	chr6	6587337	6587525	DNA|hAT-Charlie|MER5A	-	chr6	6550427	6587387	MSTRG.20260.6	-	6550427,6569417,6587187	6564388,6569489,6587387	0.645084
GM12878	chr10	26437994	26438001	26438000	+	High_confidence	4	5	11	0.334865	3.277613	chr10	26437828	26438080	LINE|L1|L1MC5a	-	chr10	26438202	26567803	APBB1IP|ENST00000376236.8	+	26438202,26438651,26492326,26496303,26500818,26503196,26511746,26513538,26533438,26536073,26541581,26560104,26560729,26562325,26566960	26438455,26438853,26492398,26496391,26501111,26503274,26511906,26513660,26533525,26536217,26541692,26560203,26560844,26562429,26567803	1.000000
GM12878	chr18	8608041	8608049	8608048	+	RAMPAGE_only	8	10	20	0.608845	3.826875	chr18	8607829	8608179	SINE|Alu|AluJr	+	chr18	8609436	8639381	RAB12|ENST00000649141.1	+	8609436,8624937,8633188,8635532,8636252,8638148	8609953,8624998,8633327,8635622,8636357,8639381	0.750000
GM12878	chr6	13261082	13261106	13261103	+	RAMPAGE_only	15	15	70	2.130958	5.132816	chr6	13260907	13261111	DNA|hAT-Charlie|MER20	-	chr6	13272211	13286197	PHACTR1|ENST00000489548.1	+	13272211,13272859,13278267,13283421,13286145	13272468,13272915,13278329,13283562,13286197	0.685714
GM12878	chr22	44181040	44181056	44181055	+	High_confidence	6	6	12	0.365307	3.418296	chr22	44180997	44181117	LINE|L2|L2c	+	chr22	44180889	44208469	PARVG|NM_022141.6	+	44180889,44181741,44183317,44185807,44187775,44189113,44190550,44192048,44193800,44196154,44196346,44198620,44205756,44206316	44181185,44181917,44183408,44185872,44187878,44189254,44190666,44192104,44193823,44196213,44196415,44198722,44205829,44208469	0.750000
GM12878	chr1	212794699	212794807	212794699	+	High_confidence	11	12	123	3.744397	4.535828	chr1	212794607	212794885	LINE|L2|L2c	-	chr1	212794682	212804651	TATDN3|ENST00000530399.2	+	212794682,212795094,212796516,212797111,212802700,212804319,212804595	212794808,212795127,212796590,212797196,212802763,212804429,212804651	0.869919
GM12878	chr13	30376935	30376965	30376953	-	High_confidence	36	47	173	5.266510	5.983426	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30374002	30376964	LINC00426|ENST00000416261.1	-	30374002,30375466,30376826	30374093,30375776,30376964	0.693642
GM12878	chrX	150879888	150879903	150879902	-	RAMPAGE_only	3	4	9	0.273980	3.000000	chrX	150879626	150879948	SINE|Alu|AluJb	+	chrX	150766336	150898630	CD99L2|ENST00000346693.8	-	150766336,150770303,150776173,150777335,150793690,150795205,150795417,150814861,150816006,150828305,150831230,150898521	150769101,150770369,150776293,150777482,150793756,150795289,150795486,150814936,150816078,150829604,150831293,150898630	0.777778
GM12878	chr2	182726777	182726802	182726777	+	RAMPAGE_only	2	2	9	0.273980	2.947703	chr2	182726762	182727020	SINE|Alu|AluJo	-	chr2	182720079	182780025	MSTRG.14698.10	+	182720079,182722024,182728575,182729847,182731029,182732498,182740298,182741242,182743597,182751657,182752071,182755002,182756313,182757691,182758836,182759159,182762681,182775315,182777120	182720169,182722075,182728994,182729941,182731107,182732542,182740388,182741356,182743712,182751785,182752188,182755104,182756469,182757825,182758890,182759307,182762801,182775420,182780025	0.666667
GM12878	chr9	94333653	94333670	94333669	+	RAMPAGE_only	5	6	9	0.273980	3.169925	chr9	94333514	94333815	SINE|Alu|AluSz	+	chr9	94332475	94360948	LOC100132077|NR_033937.1	+	94332475,94338835,94359484	94332988,94339020,94360948	0.777778
GM12878	chr12	111852	111912	111875	-	High_confidence	27	43	127	3.866166	5.676585	chr12	110820	111833	LTR|ERV1|HERVP71A-int	-	chr12	106523	111850	AC026369.3|ENST00000540226.1	-	106523,111618	106877,111850	0.952756
GM12878	chr4	1201623	1201640	1201639	-	RAMPAGE_only	5	5	10	0.304423	2.725481	chr4	1201585	1201882	SINE|Alu|AluY	-	chr4	1199027	1208962	SPON2|ENST00000400762.7	-	1199027,1201268,1204981,1208575	1200047,1201462,1205116,1208962	0.600000
GM12878	chr1	19344364	19344365	19344364	-	RAMPAGE_only	7	7	7	0.213096	2.807355	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
GM12878	chr1	31943103	31943132	31943103	-	High_confidence	10	10	63	1.917862	4.990947	chr1	31942849	31943164	SINE|Alu|AluSz6	+	chr1	31915894	31942576	PTP4A2|ENST00000468531.1	-	31915894,31918969,31942528	31915987,31919658,31942576	0.968254
GM12878	chr9	122913055	122913065	122913055	-	High_confidence	8	8	15	0.456634	3.378783	chr9	122912996	122913067	LINE|L2|L2b	+	chr9	122908055	122913328	ZBTB6|NM_006626.5	-	122908055,122913250	122912081,122913328	0.533333
GM12878	chr16	76309851	76309865	76309851	+	High_confidence	29	29	59	1.796093	4.526829	chr16	76309640	76309982	LTR|ERVL-MaLR|THE1A	+	chr16	76309852	76495198	CNTNAP4|ENST00000471618.5	+	76309852,76316412,76355317,76427451,76448011,76448766,76449714,76452507,76461955,76467351,76475938,76479418,76489685,76494909	76309906,76316523,76355511,76427599,76448215,76448951,76449858,76452769,76462105,76467523,76476045,76479538,76489883,76495198	0.881356
GM12878	chr18	12419877	12420027	12419888	+	High_confidence	22	24	140	4.261915	6.320124	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12419891	12427322	PRELID3A|ENST00000589952.5	+	12419891,12420324,12421539,12427040,12427220	12419947,12420493,12421629,12427111,12427322	0.635714
GM12878	chr9	124932433	124932454	124932453	-	RAMPAGE_only	4	4	8	0.243538	2.521641	chr9	124932410	124932654	SINE|MIR|MIR	+	chr9	124878377	124929268	GOLGA1|ENST00000475407.5	-	124878377,124881170,124881783,124882509,124888252,124889142,124889433,124890388,124898548,124899328,124900451,124908376,124911900,124921711,124923094,124926708,124928187,124929215	124880610,124881257,124881954,124882569,124888396,124889303,124889536,124890478,124898644,124899478,124900547,124908472,124912026,124921892,124923223,124926741,124928285,124929268	0.875000
GM12878	chr3	10199400	10199401	10199400	+	RAMPAGE_only	4	4	7	0.213096	2.584963	chr3	10199343	10199441	SINE|MIR|MIRb	+	chr3	10164878	10243743	IRAK2|NM_001570.3	+	10164878,10177837,10200368,10209588,10213206,10213483,10216933,10219679,10222635,10226370,10234458,10238747,10242115	10165048,10178020,10200515,10209692,10213401,10213548,10217048,10219789,10222831,10226433,10234659,10239039,10243743	0.571429
GM12878	chr11	64226142	64226180	64226142	-	High_confidence	170	173	879	26.758739	7.142006	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64224202	64226148	TRPT1|ENST00000545812.1	-	64224202,64224284,64224542,64224794,64225498,64225785,64226049	64224210,64224341,64224717,64224970,64225580,64225869,64226148	0.667804
GM12878	chr8	80102423	80102444	80102423	-	RAMPAGE_only	3	5	15	0.456634	3.773557	chr8	80102072	80102547	LTR|ERVL-MaLR|MLT1F	-	chr8	80034867	80080831	TPD52|NM_001025252.2	-	80034867,80042619,80051526,80053281,80064477,80080314	80038235,80042668,80051628,80053430,80064593,80080831	0.800000
GM12878	chr9	121207782	121207803	121207793	+	High_confidence	18	19	76	2.313611	4.941548	chr9	121207755	121207923	SINE|Alu|AluJb	-	chr9	121207793	121265186	GSN|ENST00000434663.5	+	121207793,121209295,121210235,121210783,121231164,121265153	121207897,121209397,121210329,121210867,121231303,121265186	0.815789
GM12878	chr7	111329431	111329432	111329431	-	RAMPAGE_only	6	6	9	0.273980	2.500000	chr7	111329182	111330673	LINE|L1|L1MC4	+	chr7	111325525	111562504	MSTRG.22341.8	-	111325525,111487237,111521312,111532517,111561850,111562463	111329451,111487341,111521449,111532585,111561923,111562504	0.555556
GM12878	chr8	11484489	11484509	11484489	-	RAMPAGE_only	10	10	34	1.035037	4.793345	chr8	11484295	11484694	LTR|ERVL-MaLR|MLT1B	-	chr8	11479202	11481068	AF131216.5|ENST00000644741.1	-	11479202,11480352,11481004	11479639,11480561,11481068	0.529412
GM12878	chr15	52100496	52100544	52100543	-	High_confidence	42	66	292	8.889138	6.617482	chr15	52100279	52100861	LTR|ERVL|MER73	-	chr15	52056674	52100523	AC023906.5|ENST00000558607.1	-	52056674,52100469	52057255,52100523	0.794521
GM12878	chr10	98391164	98391228	98391170	-	RAMPAGE_only	149	149	739	22.496824	5.993376	chr10	98391143	98391387	LINE|L2|L2c	+	chr10	98383564	98392688	MSTRG.3255.1	-	98383564,98384946,98387200,98390597,98391009,98392431	98383868,98385067,98387307,98390754,98391196,98392688	0.947226
GM12878	chr7	2242922	2242923	2242922	+	High_confidence	157	157	157	4.779434	5.036494	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
GM12878	chr21	42524949	42524979	42524977	+	RAMPAGE_only	19	33	51	1.552555	4.811663	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42513913	42581440	SLC37A1|ENST00000352133.2	+	42513913,42518276,42525775,42534697,42535471,42539511,42542403,42543435,42547102,42554061,42558957,42562077,42563814,42564707,42565826,42566984,42568359,42574817,42579735,42580344	42514717,42518510,42525857,42534830,42535550,42539647,42542480,42543602,42547140,42554142,42559089,42562168,42563877,42564793,42565875,42567058,42568438,42574915,42579800,42581440	0.725490
GM12878	chr11	117185994	117186035	117186006	+	High_confidence	8	8	38	1.156806	4.416608	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.842105
GM12878	chr11	119046586	119046588	119046587	-	RAMPAGE_only	6	10	10	0.304423	3.169925	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.900000
GM12878	chr1	6200859	6200878	6200877	-	High_confidence	5	7	14	0.426192	3.026987	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.928571
GM12878	chr14	24135453	24135454	24135453	+	High_confidence	6	6	8	0.243538	2.807355	chr14	24135176	24135499	LINE|L2|L2a	-	chr14	24136157	24138967	PSME1|ENST00000206451.10	+	24136157,24136984,24137142,24137320,24137519,24137699,24138048,24138195,24138344,24138473,24138735	24136301,24137017,24137205,24137431,24137565,24137797,24138117,24138263,24138399,24138560,24138967	0.875000
GM12878	chr22	39021347	39021410	39021347	+	High_confidence	9	9	38	1.156806	3.346990	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.921053
GM12878	chr10	123846382	123846383	123846382	-	RAMPAGE_only	7	7	10	0.304423	2.947703	chr10	123846075	123846587	DNA|hAT-Charlie|MER1A	-	chr10	123745635	123891814	CPXM2|ENST00000241305.3	-	123745635,123754662,123757212,123761871,123766972,123768525,123770915,123780166,123797975,123799114,123842348,123862613,123880210,123891355	123747017,123754762,123757352,123762169,123767152,123768722,123771039,123780255,123798126,123799199,123842488,123862723,123880309,123891814	0.600000
GM12878	chr15	88635631	88635655	88635654	+	High_confidence	4	4	12	0.365307	3.022055	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	1.000000
GM12878	chr1	28681084	28681085	28681084	+	RAMPAGE_only	7	7	7	0.213096	2.521641	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	0.857143
GM12878	chr20	37043866	37043873	37043868	-	RAMPAGE_only	6	8	13	0.395749	3.026987	chr20	37043685	37044031	LINE|L1|L1MB8	+	chr20	36996348	37068055	MSTRG.15469.1	-	36996348,37003701,37007410,37018278,37020658,37022649,37032664,37035241,37040152,37044085,37047052,37055552,37056145,37061102,37062083,37065423,37066723,37066992,37067985	36998929,37003866,37007559,37018369,37020730,37022826,37032876,37035508,37040285,37044250,37047190,37055656,37056258,37061269,37062270,37065473,37066884,37067297,37068055	0.846154
GM12878	chr9	37532357	37532379	37532368	-	RAMPAGE_only	5	7	21	0.639287	3.576618	chr9	37532291	37532645	SINE|Alu|AluJb	-	chr9	37521717	37536062	FBXO10|ENST00000543968.5	-	37521717,37522824,37525101,37529123,37531908,37535991	37521901,37522977,37525172,37529260,37532058,37536062	0.857143
GM12878	chr6	26956509	26956589	26956526	-	High_confidence	4	4	35	1.065479	4.476064	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.857143
GM12878	chr4	7754076	7754077	7754076	+	High_confidence	136	139	144	4.383684	5.854065	chr4	7753883	7754236	LTR|ERVL-MaLR|THE1A	+	chr4	7754089	7778928	AFAP1-AS1|NR_026892.1	+	7754089,7772203	7754159,7778928	0.833333
GM12878	chr22	41940217	41940222	41940217	-	High_confidence	14	14	26	0.791499	4.563856	chr22	41939903	41940386	LINE|L2|L2a	+	chr22	41938720	41940219	CENPM|NM_001110215.2	-	41938720,41940138	41939196,41940219	0.576923
GM12878	chr2	119311885	119311896	119311895	-	RAMPAGE_only	13	14	25	0.761056	3.688722	chr2	119311891	119312118	SINE|MIR|MIRb	+	chr2	119302216	119366742	C2orf76|NM_001322329.1	-	119302216,119311621,119317465,119321153,119339826,119340158,119366435	119302548,119311703,119317503,119321204,119339971,119340361,119366742	0.600000
GM12878	chr9	137738510	137738574	137738559	+	High_confidence	19	19	121	3.683512	6.026671	chr9	137738221	137739080	LINE|L1|L1MB3	+	chr9	137738606	137754221	EHMT1|ENST00000495657.5	+	137738606,137743370,137743901,137752330,137754170	137738779,137743528,137744090,137752408,137754221	0.859504
GM12878	chr12	1080685	1080686	1080685	+	RAMPAGE_only	54	60	74	2.252727	5.777021	chr12	1080490	1080912	LTR|ERVL-MaLR|THE1A	+	chr12	1083140	1444589	ERC1|ENST00000538971.6	+	1083140,1104749,1110191,1115865,1141619,1180539,1181924,1183280,1189858,1204500,1236768,1289851,1371832,1408148,1410388,1444561	1083580,1104824,1110347,1116033,1141787,1180677,1182065,1183421,1190052,1204512,1236904,1290012,1371977,1408247,1410453,1444589	0.972973
GM12878	chr8	127208283	127208325	127208283	-	RAMPAGE_only	9	12	41	1.248132	4.156198	chr8	127207959	127208493	DNA|hAT-Charlie|MER1A	-	chr8	127204411	127219238	CASC19|ENST00000500112.2	-	127204411,127218809	127209717,127219238	0.804878
GM12878	chr4	185341496	185341500	185341498	+	RAMPAGE_only	4	6	9	0.273980	3.000000	chr4	185341432	185341861	LTR|ERVL-MaLR|MLT1E3	-	chr4	185320844	185370185	SNX25|ENST00000504959.5	+	185320844,185323527,185332594,185339378,185341975,185346536,185351444,185353484,185357670,185361923,185362610,185369749	185320864,185323800,185332713,185339510,185342116,185346650,185351609,185353602,185357737,185362105,185362711,185370185	0.666667
GM12878	chr3	106256150	106256152	106256150	+	High_confidence	563	687	953	29.011466	4.207806	chr3	106255986	106256329	LTR|ERV1|MER61A	+	chr3	106256114	106266576	MSTRG.17408.1	+	106256114	106266576	0.993704
GM12878	chr6	137792775	137792835	137792775	-	High_confidence	14	16	73	2.222284	5.516876	chr6	137792705	137792907	LTR?|LTR?|MamRep605	-	chr6	137730169	137792835	LINC02539|ENST00000645996.1	-	137730169,137784731,137792747	137730597,137784856,137792835	0.520548
GM12878	chr3	194488594	194488595	194488594	+	RAMPAGE_only	15	15	17	0.517518	3.337175	chr3	194488306	194489162	LINE|L2|L2	+	chr3	194487453	194518279	LINC00884|ENST00000448892.1	+	194487453,194497937,194517070	194488726,194498135,194518279	0.764706
GM12878	chr19	41535362	41535367	41535364	+	High_confidence	4	6	10	0.304423	3.121928	chr19	41534903	41535457	LINE|L1|L1PB	+	chr19	41535339	41536902	LINC01480|ENST00000487420.2	+	41535339,41536597	41535783,41536902	0.600000
GM12878	chr16	81818018	81818063	81818050	+	RAMPAGE_only	9	9	36	1.095921	4.707715	chr16	81817992	81818161	SINE|MIR|MIRb	+	chr16	81798465	81869233	PLCG2|ENST00000565400.5	+	81798465,81854443,81858262,81859115,81869213	81798982,81854587,81858356,81859163,81869233	0.527778
GM12878	chr3	16511147	16511187	16511147	-	RAMPAGE_only	16	16	123	3.744397	4.757574	chr3	16510634	16511545	LINE|L1|L1ME2z	+	chr3	16378094	16512904	RFTN1|ENST00000449415.5	-	16378094,16409374,16433850,16493724,16512783	16378102,16409483,16434037,16493877,16512904	0.650407
GM12878	chr4	105145748	105145811	105145785	+	High_confidence	4	6	25	0.761056	3.623465	chr4	105145828	105145941	DNA|TcMar-Tigger|Tigger19b	+	chr4	105145874	105242771	TET2|ENST00000305737.6	+	105145874,105190359,105233896	105146086,105190505,105242771	0.960000
GM12878	chr2	130182079	130182107	130182102	-	High_confidence	2	2	10	0.304423	2.947703	chr2	130182068	130182133	LINE|L2|L2a	+	chr2	130151391	130182750	SMPD4|NR_033230.2	-	130151391,130153042,130153318,130153701,130154276,130155095,130156034,130156584,130157250,130161185,130164373,130167457,130172348,130172624,130172786,130173278,130173513,130174913,130176553,130181529	130152884,130153171,130153450,130153935,130154482,130155259,130156135,130156675,130157396,130161272,130164445,130167590,130172500,130172677,130172895,130173354,130173656,130175000,130176637,130182750	0.900000
GM12878	chr2	96638013	96638023	96638016	-	High_confidence	3	3	10	0.304423	2.947703	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.700000
GM12878	chr1	110871187	110871210	110871198	+	High_confidence	379	384	2268	69.043027	5.872831	chr1	110870731	110871665	LINE|L2|L2b	-	chr1	110871198	110899936	CD53|NM_001040033.1	+	110871198,110873155,110891391,110892344,110894326,110894959,110896652,110897808,110899123	110871259,110873248,110891471,110892533,110894401,110895055,110896733,110897892,110899936	0.860670
GM12878	chr6	6587475	6587510	6587475	+	High_confidence	9	12	25	0.761056	4.523562	chr6	6587337	6587525	DNA|hAT-Charlie|MER5A	-	chr6	6587077	6654983	MSTRG.20264.5	+	6587077,6588725,6624925,6626292,6649624,6654543	6588140,6588870,6625012,6626421,6649677,6654983	0.880000
GM12878	chr19	9140393	9140428	9140393	+	High_confidence	100	100	452	13.759898	6.411045	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	MSTRG.12343.2	+	9140396,9155924,9156611,9157979,9158825,9160113	9140592,9156041,9157394,9158075,9158908,9163408	0.871681
GM12878	chr1	40381340	40381365	40381352	+	RAMPAGE_only	4	5	10	0.304423	2.921928	chr1	40381190	40381531	LINE|L2|L2c	-	chr1	40374647	40423326	SMAP2|ENST00000372708.5	+	40374647,40406735,40408652,40409756,40413015,40414158,40415271,40416175,40416779,40421975	40374708,40406869,40408738,40409835,40413102,40414240,40415381,40416341,40417096,40423326	0.900000
GM12878	chr1	78620056	78620058	78620056	+	High_confidence	160	298	298	9.071791	6.768628	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.755034
GM12878	chr19	54616415	54616416	54616415	+	High_confidence	8	9	11	0.334865	3.121928	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54616929	54637556	LILRB1|NM_006669.6	+	54616929,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637556	0.636364
GM12878	chr20	44971852	44971853	44971852	+	RAMPAGE_only	11	12	12	0.365307	3.251629	chr20	44971665	44971932	SINE|Alu|AluY	-	chr20	44970541	44995257	STK4|ENST00000474717.2	+	44970541,44972077,44978442,44981828,44987131,44995089	44970605,44972158,44978571,44981943,44987296,44995257	0.833333
GM12878	chr9	32997349	32997350	32997349	-	High_confidence	31	31	32	0.974152	4.607264	chr9	32997347	32997748	LINE|L2|L2c	-	chr9	32972762	32997360	APTX|ENST00000479656.5	-	32972762,32974457,32984630,32985970,32987543,32988078,32989758,32997242	32973652,32974561,32984857,32986030,32987842,32988124,32989895,32997360	0.937500
GM12878	chr18	9117556	9117560	9117559	+	RAMPAGE_only	4	5	11	0.334865	2.846439	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	0.818182
GM12878	chr17	50271485	50271486	50271485	+	High_confidence	7	7	9	0.273980	2.947703	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
GM12878	chr8	22701712	22701722	22701712	-	High_confidence	4	5	12	0.365307	3.188722	chr8	22701596	22701688	DNA|hAT-Charlie|Charlie17a	-	chr8	22695641	22701968	MSTRG.22857.1	-	22695641,22701217	22698833,22701968	0.750000
GM12878	chrX	19807658	19807659	19807658	-	RAMPAGE_only	7	8	9	0.273980	3.000000	chrX	19807399	19807742	LINE|L2|L2a	+	chrX	19533964	19799799	SH3KBP1|NM_001024666.2	-	19533964,19537716,19541924,19545921,19549973,19569102,19588642,19592066,19594948,19607937,19631863,19645399,19683822,19695611,19706880,19746317,19799633	19536458,19537780,19542193,19546050,19550083,19569188,19588802,19592147,19595000,19608045,19631958,19645475,19684028,19695741,19706984,19746441,19799799	0.888889
GM12878	chr16	21645260	21645290	21645289	-	RAMPAGE_only	20	21	49	1.491670	5.027875	chr16	21645170	21645476	SINE|Alu|AluSz	+	chr16	21639536	21652660	IGSF6|ENST00000268389.5	-	21639536,21643073,21643547,21644289,21647132,21652531	21641593,21643154,21643598,21644396,21647492,21652660	0.938776
GM12878	chr11	120579986	120580002	120579986	+	RAMPAGE_only	8	11	19	0.578403	4.037401	chr11	120579747	120580196	LINE|L1|L1ME1	-	chr11	120564485	120962978	GRIK4|ENST00000533291.5	+	120564485,120653684,120660268,120802692,120815377,120819754,120831851,120836790,120861958,120874065,120875138,120898531,120905289,120940346,120952854,120956779,120960908,120962455	120564725,120653792,120660400,120802857,120815475,120819920,120832030,120836844,120862120,120874218,120875243,120898639,120905493,120940460,120952964,120956953,120961074,120962978	0.578947
GM12878	chr12	56157338	56157416	56157353	+	High_confidence	21	29	146	4.444569	5.425016	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.890411
GM12878	chr4	41096136	41096137	41096136	-	RAMPAGE_only	18	21	24	0.730614	4.251629	chr4	41095759	41096200	LINE|L2|L2c	+	chr4	40815312	41014385	APBB2|ENST00000513611.5	-	40815312,40821870,40823643,40825886,40827131,40830462,40890363,40893264,40934455,40934613,40944864,41013582	40816259,40822050,40823759,40825970,40827219,40830577,40890491,40893411,40934516,40934699,40945073,41014385	0.583333
GM12878	chr2	119356317	119356366	119356346	-	RAMPAGE_only	3	3	18	0.547961	2.536608	chr2	119356120	119356424	SINE|Alu|AluSx1	+	chr2	119302443	119366682	C2orf76|ENST00000409877.5	-	119302443,119311621,119317465,119321153,119339826,119340158,119366356	119302548,119311703,119317503,119321204,119339971,119340361,119366682	0.888889
GM12878	chr1	52530079	52530112	52530087	-	RAMPAGE_only	6	6	16	0.487076	3.452820	chr1	52529836	52530137	SINE|Alu|AluJb	-	chr1	52526019	52553085	TUT4|ENST00000470626.1	-	52526019,52529767,52534986,52538523,52552930	52526373,52529885,52535122,52538643,52553085	0.500000
GM12878	chr3	189308262	189308290	189308265	+	RAMPAGE_only	61	69	350	10.654788	6.308963	chr3	189308185	189308318	SINE|MIR|MIRc	-	chr3	189171973	189323482	TPRG1|NM_198485.3	+	189171973,189207375,189215291,189238732,189310385,189320625	189172131,189207594,189215383,189238909,189310539,189323482	0.505714
GM12878	chr5	131224467	131224473	131224470	-	High_confidence	320	397	1054	32.086134	7.463819	chr5	131224178	131224746	LINE|L2|L2	+	chr5	131208936	131224462	MSTRG.19735.1	-	131208936,131223948	131210153,131224462	0.922201
GM12878	chr2	84889471	84889472	84889471	+	RAMPAGE_only	11	12	14	0.426192	3.546594	chr2	84889489	84889698	SINE|MIR|MIRb	+	chr2	84905624	84906675	TMSB10|ENST00000233143.5	+	84905624,84906002,84906388	84905718,84906117,84906675	0.571429
GM12878	chr21	25421624	25421669	25421624	-	RAMPAGE_only	7	8	26	0.791499	4.209867	chr21	25421586	25421665	SINE|MIR|MIRc	-	chr21	25385819	25431701	LINC00158|NR_024027.2	-	25385819,25420707,25424553,25429765,25431177	25386338,25420800,25424649,25430009,25431701	0.692308
GM12878	chr14	100066439	100066440	100066439	+	High_confidence	68	70	86	2.618034	5.397647	chr14	100066222	100066467	SINE|MIR|MIRc	-	chr14	100066436	100128581	EVL|ENST00000557153.5	+	100066436,100084686,100097480,100123538,100126706,100128518	100066487,100084855,100097658,100123602,100126771,100128581	0.534884
GM12878	chr8	116652014	116652035	116652016	+	High_confidence	5	7	12	0.365307	2.845351	chr8	116651777	116652029	LINE|L2|L2	-	chr8	116652099	116654625	LOC105375713|NR_136278.1	+	116652099,116654158	116652456,116654625	0.583333
GM12878	chr17	8810207	8810208	8810207	-	RAMPAGE_only	9	9	10	0.304423	2.947703	chr17	8810032	8810388	LTR|ERVL-MaLR|THE1B	-	chr17	8802736	8867660	PIK3R6|ENST00000611951.4	-	8802736,8804040,8819082,8821845,8822586,8822995,8823386,8827171,8828111,8828566,8829705,8832888,8835272,8836546,8836790,8837802,8838295,8839613,8849781,8867528	8803429,8804153,8819198,8821936,8822657,8823086,8823497,8827294,8828190,8828990,8829792,8833045,8835456,8836716,8836923,8837871,8838655,8839697,8849885,8867660	0.900000
GM12878	chr20	48359909	48359935	48359912	+	High_confidence	6	11	45	1.369901	3.656821	chr20	48359855	48360168	LINE|L2|L2b	+	chr20	48359910	48370638	LINC00494|NR_026958.1	+	48359910,48364888,48366473,48366735,48368079	48360150,48365197,48366633,48367059,48370638	0.844444
GM12878	chr3	125836977	125836998	125836997	-	RAMPAGE_only	5	8	14	0.426192	3.521641	chr3	125835663	125838487	LTR|ERV1|HERVS71-int	+	chr3	125827262	125861799	AC092902.2|ENST00000617582.1	-	125827262,125861703	125827455,125861799	0.642857
GM12878	chr19	39335698	39335717	39335700	-	High_confidence	3	4	12	0.365307	3.277613	chr19	39335628	39335746	DNA|hAT-Tip100|MER91A	-	chr19	39328358	39335531	GMFG|ENST00000596583.5	-	39328358,39328999,39329547,39333076,39335434	39328548,39329073,39329626,39333126,39335531	0.833333
GM12878	chr10	90463287	90463288	90463287	+	RAMPAGE_only	6	7	8	0.243538	2.521641	chr10	90463089	90463460	LTR|ERVL-MaLR|MLT1A0	+	chr10	90454169	90501440	AL391704.1|ENST00000422206.5	+	90454169,90486018,90499272	90454315,90486072,90501440	0.500000
GM12878	chr9	64870493	64870533	64870532	-	High_confidence	17	17	89	2.709360	3.318029	chr9	64870414	64870933	LTR|ERV1|LTR10A	-	chr9	64785596	64870619	MSTRG.23992.2	-	64785596,64843234	64790021,64870619	0.955056
GM12878	chr3	152243794	152243828	152243809	+	High_confidence	38	71	275	8.371619	4.786630	chr3	152243797	152244104	SINE|Alu|AluSx1	-	chr3	152243827	152300110	MBNL1|ENST00000477171.1	+	152243827,152244320,152299404	152244040,152244440,152300110	0.905455
GM12878	chr19	55280217	55280246	55280218	-	High_confidence	14	19	59	1.796093	3.543117	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.932203
GM12878	chr17	28889156	28889195	28889175	-	RAMPAGE_only	27	32	258	7.854101	6.895645	chr17	28889130	28889320	LINE|L2|L2c	-	chr17	28881343	28885947	FLOT2|ENST00000465427.3	-	28881343,28881813,28882117,28882336,28882572,28883176,28885856	28881375,28882028,28882237,28882450,28882691,28883231,28885947	0.713178
GM12878	chr16	58862219	58862220	58862219	-	RAMPAGE_only	97	98	100	3.044225	4.707060	chr16	58862059	58862421	LTR|ERVL-MaLR|THE1B	-	chr16	58847806	58880036	AC092378.2|ENST00000562304.1	-	58847806,58879878	58848153,58880036	0.920000
GM12878	chr2	201122589	201122626	201122589	+	RAMPAGE_only	6	6	18	0.547961	3.572431	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201118663	201160455	CFLAR|ENST00000439154.6	+	201118663,201129728,201133028,201135971,201140356,201142644,201145377,201149002,201149753,201160431	201118901,201130146,201133134,201136107,201140439,201142762,201145432,201149052,201149835,201160455	1.000000
GM12878	chr1	174205112	174205133	174205132	+	RAMPAGE_only	4	4	11	0.334865	3.121928	chr1	174205029	174205847	LINE|L1|L1PREC2	-	chr1	174220711	174231245	RABGAP1L|ENST00000487987.1	+	174220711,174231144	174221164,174231245	0.545455
GM12878	chr19	571505	571530	571525	+	High_confidence	7	8	21	0.639287	4.106603	chr19	571376	571615	LTR|ERV1|HERVIP10B3-int	-	chr19	571309	583493	BSG|ENST00000346916.8	+	571309,580378,580645,581314,582305,582513,582749	571579,580461,580782,581591,582330,582582,583493	0.571429
GM12878	chr16	11587397	11587475	11587465	-	High_confidence	47	49	230	7.001718	5.064117	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.986957
GM12878	chr6	88761626	88761632	88761626	-	RAMPAGE_only	3	3	8	0.243538	2.500000	chr6	88761607	88761819	DNA|hAT-Charlie|MER58A	+	chr6	88612718	88963409	RNGTT|ENST00000369475.7	-	88612718,88614271,88678352,88769773,88844356,88849754,88853628,88890494,88891805,88904714,88906364,88928984,88929163,88941070,88963345	88612882,88614395,88678419,88769874,88844521,88849826,88853764,88890596,88891915,88904955,88906440,88929073,88929267,88941180,88963409	0.750000
GM12878	chr16	30445873	30445877	30445876	-	High_confidence	64	110	172	5.236067	5.560843	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.947674
GM12878	chr1	234953878	234953912	234953878	+	RAMPAGE_only	12	18	76	2.313611	4.537973	chr1	234953834	234953972	SINE|Alu|AluSq2	-	chr1	234957230	234959989	AL391832.1|ENST00000423963.1	+	234957230,234959696	234957360,234959989	0.789474
GM12878	chr19	10867680	10867706	10867702	+	RAMPAGE_only	14	19	44	1.339459	4.026030	chr19	10867641	10867952	SINE|Alu|AluSx1	-	chr19	10848429	10869684	C19orf38|NM_001136482.1	+	10848429,10850258,10856264,10858315,10859914,10863169,10869217	10848539,10850567,10856357,10858343,10859958,10863207,10869684	0.818182
GM12878	chr12	16832371	16832402	16832371	-	RAMPAGE_only	2	3	11	0.334865	3.459432	chr12	16832155	16832513	LTR|ERVL-MaLR|THE1D	-	chr12	16551181	16610594	LMO3|ENST00000541846.5	-	16551181,16560412,16600654,16610507	16551327,16560538,16600868,16610594	0.545455
GM12878	chr3	187021850	187021951	187021851	+	High_confidence	937	1774	2904	88.404300	6.726118	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.940771
GM12878	chr16	81802186	81802246	81802213	+	RAMPAGE_only	111	116	261	7.945428	6.303053	chr16	81802093	81802411	SINE|Alu|AluYk3	-	chr16	81785989	81958020	PLCG2|ENST00000359376.7	+	81785989,81854443,81858262,81859115,81869213,81870851,81880909,81883268,81889171,81891471,81893708,81895806,81900611,81905402,81907684,81908415,81910519,81912596,81919483,81921197,81923484,81927081,81928557,81931496,81934428,81936168,81937757,81938800,81939891,81946174,81956694,81956848,81957955	81786182,81854587,81858356,81859163,81869298,81870935,81880953,81883341,81889273,81891590,81893794,81895927,81900780,81905507,81907774,81908591,81910720,81912716,81919664,81921269,81923594,81927178,81928624,81931654,81934531,81936378,81937903,81938915,81940059,81946263,81956847,81956879,81958020	0.590038
GM12878	chr19	45862566	45862600	45862590	-	High_confidence	7	7	17	0.517518	3.577820	chr19	45862393	45862941	LINE|L2|L2b	-	chr19	45848829	45863194	SYMPK|ENST00000594293.5	-	45848829,45852311,45852481,45854174,45854390,45861899,45863057	45848876,45852385,45852535,45854240,45854507,45862027,45863194	0.529412
GM12878	chr1	154975497	154975546	154975518	+	High_confidence	4	4	20	0.608845	3.642150	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.800000
GM12878	chr20	47412507	47412512	47412511	-	High_confidence	6	6	12	0.365307	2.913977	chr20	47412418	47412713	SINE|Alu|AluSz	+	chr20	47382549	47412691	MSTRG.15570.1	-	47382549,47397148,47412069	47385019,47397345,47412691	0.833333
GM12878	chr20	47500862	47500901	47500899	+	High_confidence	11	18	32	0.974152	4.538910	chr20	47500403	47500991	LINE|L2|L2a	-	chr20	47501856	47656877	NCOA3|NM_006534.3	+	47501856,47583182,47622228,47623910,47625380,47627001,47627560,47627921,47633495,47634047,47635321,47635890,47637647,47639007,47639576,47639924,47642212,47647072,47649004,47650981,47652405,47652930,47653405	47502019,47583261,47622330,47624083,47625481,47627176,47627749,47628023,47633636,47634195,47635713,47636762,47637783,47639202,47639822,47640051,47642384,47647366,47649097,47651276,47652580,47653072,47656877	0.875000
GM12878	chr6	11728615	11728640	11728624	-	High_confidence	5	5	16	0.487076	3.506891	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.937500
GM12878	chr9	37911950	37911960	37911957	-	RAMPAGE_only	6	8	22	0.669730	3.732159	chr9	37911929	37912135	LINE|L1|L1ME4a	+	chr9	37887596	37904353	SLC25A51|NM_033412.3	-	37887596,37899828,37904067	37888592,37899950,37904353	0.500000
GM12878	chr22	39874066	39874067	39874066	-	RAMPAGE_only	27	29	35	1.065479	3.296467	chr22	39873891	39874245	LTR|ERVL-MaLR|THE1B	-	chr22	39743043	39893790	ENTHD1|NM_152512.3	-	39743043,39765222,39820992,39835839,39861764,39887399,39893694	39744283,39765609,39821113,39835958,39862007,39887903,39893790	0.885714
GM12878	chr1	53368108	53368160	53368122	-	High_confidence	6	6	35	1.065479	3.757484	chr1	53367866	53368194	LINE|L2|L2b	+	chr1	53366667	53368245	AC119428.2|ENST00000449958.1	-	53366667,53368005	53367277,53368245	0.857143
GM12878	chr3	187024756	187024786	187024779	+	High_confidence	2	2	10	0.304423	2.503258	chr3	187024583	187024927	LINE|L1|L1MC5a	+	chr3	187025478	187043084	ST6GAL1|ENST00000423451.5	+	187025478,187038741,187042653	187025517,187038873,187043084	0.600000
GM12878	chr22	30307771	30307772	30307771	-	RAMPAGE_only	9	14	14	0.426192	3.235926	chr22	30307679	30307793	SINE|MIR|MIR	-	chr22	30291990	30299796	TBC1D10A|ENST00000462073.5	-	30291990,30293650,30294795,30294940,30295736	30292851,30294110,30294861,30295055,30299796	0.571429
GM12878	chr5	171977728	171977730	171977728	-	RAMPAGE_only	103	140	170	5.175183	5.382075	chr5	171977552	171977911	LTR|ERVL-MaLR|THE1B	-	chr5	171861551	172006640	FBXW11|ENST00000265094.9	-	171861551,171868609,171869728,171870747,171872871,171876284,171878010,171891466,171899003,171899913,171910571,171957596,172006457	171864101,171868796,171869807,171870858,171872990,171876534,171878129,171891604,171899094,171900100,171910797,171957698,172006640	0.864706
GM12878	chr19	571725	571792	571754	-	High_confidence	34	48	168	5.114298	5.997003	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.875000
GM12878	chr18	34156926	34156938	34156937	-	High_confidence	9	9	23	0.700172	3.913977	chr18	34156644	34157262	LINE|L2|L2a	+	chr18	34093460	34156693	NOL4|ENST00000588280.5	-	34093460,34104046,34105048,34129870,34156638	34093597,34104159,34105160,34130020,34156693	0.782609
GM12878	chr2	127978547	127978557	127978547	-	RAMPAGE_only	14	14	46	1.400344	4.385203	chr2	127978481	127978674	LINE|L2|L2	-	chr2	127941217	128027293	SAP130|ENST00000259235.7	-	127941217,127942423,127945455,127949868,127950159,127954985,127986784,127989563,127993186,127996349,127999740,128000055,128000306,128010268,128013029,128014802,128016388,128017679,128026180,128027091	127942164,127942537,127945559,127949994,127950408,127955344,127986962,127989866,127993308,127996491,127999845,128000146,128000454,128010393,128013154,128014914,128016547,128017915,128026298,128027293	1.000000
GM12878	chr5	140700445	140700452	140700445	+	High_confidence	2059	2419	4164	126.761537	5.553807	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.989193
GM12878	chr9	5580714	5580719	5580718	-	RAMPAGE_only	44	102	169	5.144741	4.265867	chr9	5580521	5580905	LTR|ERVL-MaLR|MSTA	-	chr9	5577313	5628934	MSTRG.23695.2	-	5577313,5627451	5577511,5628934	0.964497
GM12878	chr7	10973307	10973328	10973327	+	High_confidence	6	6	20	0.608845	3.787144	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.700000
GM12878	chr2	10120434	10120452	10120434	+	High_confidence	66	69	96	2.922456	4.993303	chr2	10120422	10120535	SINE|Alu|FLAM_C	+	chr2	10120697	10131418	RRM2|ENST00000641198.1	+	10120697,10122754,10122982,10123386,10123735,10124716,10126874,10127086,10128847,10129040,10129233	10120882,10122897,10123057,10123530,10123852,10124850,10126969,10127220,10128952,10129154,10131418	0.750000
GM12878	chr7	139119166	139119170	139119166	+	RAMPAGE_only	4	4	8	0.243538	2.521641	chr7	139118774	139119192	LTR|ERVL-MaLR|MLT1F	+	chr7	139133743	139161343	TTC26|NM_001321742.1	+	139133743,139134654,139137846,139139889,139142255,139147144,139148205,139160947	139133860,139134792,139137939,139140004,139142305,139147290,139148377,139161343	0.500000
GM12878	chr4	55980985	55981008	55980985	+	RAMPAGE_only	12	14	41	1.248132	3.955152	chr4	55980888	55981069	LINE|L1|HAL1	-	chr4	55964865	56033104	CEP135|ENST00000506202.1	+	55964865,55969062,55971269,55974745,55980142,55981226,55985280,55991933,55999301,55999490,56008326,56009734,56011411,56011799,56017647,56019352,56020675,56024500,56031359	55965859,55969128,55971408,55974969,55980295,55981379,55985358,55992085,55999417,55999645,56008382,56009903,56011522,56011985,56017857,56019555,56020780,56024614,56033104	0.975610
GM12878	chr14	103689675	103689696	103689688	+	RAMPAGE_only	4	4	22	0.669730	4.221928	chr14	103689545	103689698	DNA|hAT-Charlie|MER5A	-	chr14	103629240	103701513	MSTRG.7565.28	+	103629240,103654563,103657545,103662115,103662701,103669510,103670181,103673013,103673331,103675551,103675688,103677414,103679383,103687080,103692358,103693552,103701200	103629494,103654825,103657776,103662194,103662927,103669598,103670283,103673187,103673431,103675601,103675756,103677523,103679545,103687211,103692425,103700727,103701513	0.500000
GM12878	chr15	66401878	66401899	66401878	+	RAMPAGE_only	4	4	9	0.273980	3.169925	chr15	66401474	66401958	LINE|L2|L2c	-	chr15	66386872	66491544	MAP2K1|NM_002755.3	+	66386872,66435026,66436745,66443279,66444655,66481754,66484989,66487227,66489214,66489717,66490501	66387427,66435237,66436892,66443357,66444707,66481879,66485191,66487292,66489276,66489763,66491544	0.888889
GM12878	chrX	71618289	71618302	71618301	-	High_confidence	4	4	13	0.395749	3.251629	chrX	71618165	71618320	SINE|MIR|MIR3	-	chrX	71615915	71618510	CXCR3|ENST00000373691.4	-	71615915,71618437	71617703,71618510	0.769231
GM12878	chr1	6208681	6208682	6208681	-	High_confidence	26	26	26	0.791499	3.038160	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
GM12878	chr19	56313362	56313364	56313362	-	RAMPAGE_only	13	18	23	0.700172	4.001823	chr19	56313201	56313542	LTR|ERVL-MaLR|THE1B	-	chr19	56224792	56314513	ZSCAN5A|ENST00000588955.5	-	56224792,56313282,56314420	56225173,56313384,56314513	0.521739
GM12878	chr3	6717550	6717551	6717550	+	RAMPAGE_only	24	25	35	1.065479	4.314973	chr3	6717382	6717733	LTR|ERVL-MaLR|MLT1A0	+	chr3	6490478	6736129	AC069277.1|ENST00000433639.1	+	6490478,6717568,6724449,6732270,6735661	6490672,6717667,6724546,6732495,6736129	0.685714
GM12878	chr14	60210497	60210532	60210527	-	RAMPAGE_only	94	100	210	6.392873	5.727778	chr14	60210350	60210722	LTR|ERVL-MaLR|THE1B	-	chr14	60144119	60169864	DHRS7|NM_001322280.1	-	60144119,60149352,60150064,60152938,60153958,60155999,60169696	60145013,60149568,60150187,60153178,60154065,60156152,60169864	0.871429
GM12878	chr1	1853298	1853299	1853298	-	RAMPAGE_only	7	7	10	0.304423	2.646439	chr1	1853117	1853370	LINE|L2|L2b	+	chr1	1804525	1832285	GNB1|ENST00000437146.1	-	1804525,1806474,1815755,1817836,1825396,1832231	1804581,1806538,1815862,1817875,1825499,1832285	0.700000
GM12878	chr16	71894445	71894460	71894459	+	High_confidence	6	6	18	0.547961	3.350209	chr16	71894254	71894545	SINE|Alu|AluSp	-	chr16	71894407	71930639	IST1|NM_001270976.1	+	71894407,71894720,71915625,71916461,71917046,71920738,71921342,71922473,71923287,71924768,71927613	71894481,71894858,71915728,71916642,71917134,71920822,71921453,71922680,71923380,71924817,71930639	0.888889
GM12878	chr18	10890564	10890576	10890575	-	High_confidence	10	11	18	0.547961	3.572469	chr18	10890399	10890772	LTR|ERVL-MaLR|THE1C	-	chr18	10857064	10890692	PIEZO2|ENST00000579899.1	-	10857064,10871252,10890479	10857211,10871415,10890692	0.888889
GM12878	chr8	98733990	98734010	98734009	-	RAMPAGE_only	4	4	9	0.273980	2.947703	chr8	98733861	98734251	LTR|ERVL-MaLR|MSTA	-	chr8	98547959	98651724	STK3|ENST00000518582.5	-	98547959,98579663,98596031,98651465	98548161,98579789,98596169,98651724	0.777778
GM12878	chr2	196176330	196176332	196176331	-	High_confidence	137	202	246	7.488794	6.185225	chr2	196176299	196176378	LINE|RTE-BovB|MamRTE1	-	chr2	196156571	196176327	STK17B|ENST00000420683.1	-	196156571,196163261,196174248,196176225	196156651,196163427,196174407,196176327	0.735772
GM12878	chr4	39032833	39032837	39032833	-	High_confidence	4	4	9	0.273980	2.500000	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	38993734	39032922	TMEM156|ENST00000344606.6	-	38993734,38998723,39032225,39032641	38993998,38998909,39032443,39032922	0.666667
GM12878	chr4	8436080	8436153	8436138	+	High_confidence	10	10	28	0.852383	4.546594	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8436139	8439301	TRMT44|ENST00000532937.1	+	8436139,8438791	8436399,8439301	0.750000
GM12878	chr13	60427463	60427481	60427463	+	High_confidence	6	6	15	0.456634	3.324863	chr13	60427171	60427619	LINE|L1|L1MEa	-	chr13	60427305	60573870	MSTRG.6554.8	+	60427305,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573612	60427528,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573870	0.866667
GM12878	chr6	2963509	2963510	2963509	-	RAMPAGE_only	6	6	7	0.213096	2.584963	chr6	2963322	2963491	SINE|MIR|MIR	-	chr6	2948158	2962170	SERPINB6|NM_001271825.1	-	2948158,2948913,2953043,2954591,2955523,2959167,2961893	2948699,2949069,2953186,2954709,2955670,2959342,2962170	0.571429
GM12878	chr16	14606156	14606237	14606158	-	RAMPAGE_only	82	159	431	13.120611	5.987010	chr16	14606122	14606423	SINE|Alu|AluJb	+	chr16	14555653	14610743	PARN|ENST00000569444.5	-	14555653,14580873,14582180,14584346,14584748,14586317,14593300,14599903,14606483,14608280,14609057,14610643	14555709,14580943,14582291,14584422,14584791,14586361,14593378,14599960,14606526,14608319,14609123,14610743	0.856148
GM12878	chr3	190121906	190121929	190121906	-	High_confidence	21	21	42	1.278575	3.517201	chr3	190121809	190122109	SINE|Alu|AluSx	+	chr3	189988914	190121678	P3H2|ENST00000426003.1	-	189988914,189994093,189995289,190121536	189989038,189994283,189995442,190121678	0.904762
GM12878	chr7	5397868	5397883	5397882	-	High_confidence	6	6	22	0.669730	4.070656	chr7	5397841	5397934	LINE|L2|L2a	+	chr7	5376113	5397266	MSTRG.21574.8	-	5376113,5376846,5377370,5377921,5387671,5390484,5394439,5397121	5376224,5376993,5377576,5378024,5389336,5390628,5394595,5397266	0.545455
GM12878	chr6	118651542	118651626	118651592	-	High_confidence	25	25	132	4.018377	5.931461	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	1.000000
GM12878	chr3	195906039	195906075	195906039	-	RAMPAGE_only	4	4	10	0.304423	2.921928	chr3	195905498	195906779	LINE|L1|L1ME1	+	chr3	195863364	195909009	TNK2|NM_005781.4	-	195863364,195866888,195867168,195867360,195870113,195872275,195878252,195878445,195879048,195882050,195883156,195884811,195886976,195888425,195908484	195864187,195867016,195867258,195868709,195870205,195872470,195878347,195878592,195879175,195882328,195883309,195885033,195887047,195888606,195909009	0.800000
GM12878	chr17	16981371	16981407	16981393	-	High_confidence	15	18	55	1.674324	5.063528	chr17	16980989	16981426	LINE|L2|L2a	+	chr17	16975998	16981353	AC104024.1|ENST00000428142.1	-	16975998,16980200,16981300	16977630,16980716,16981353	0.872727
GM12878	chr16	11782693	11782762	11782761	-	High_confidence	11	11	74	2.252727	5.324535	chr16	11782598	11782913	SINE|Alu|AluSx1	-	chr16	11750585	11782552	ZC3H7A|ENST00000396516.6	-	11750585,11752668,11756236,11758430,11761405,11761909,11762670,11763477,11765052,11765488,11767416,11768314,11769030,11770782,11774235,11774979,11776319,11776451,11776750,11779165,11781424,11782286	11751506,11752832,11756370,11758539,11761511,11762043,11762747,11763659,11765153,11765685,11767578,11768501,11769095,11770987,11774519,11775013,11776358,11776532,11776909,11779363,11781464,11782552	0.891892
GM12878	chr14	101731406	101731414	101731413	+	High_confidence	9	9	20	0.608845	3.616349	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.850000
GM12878	chr1	174204787	174204800	174204787	+	RAMPAGE_only	7	8	13	0.395749	3.546594	chr1	174204635	174205029	LTR|ERVL-MaLR|MSTA	+	chr1	174220711	174231245	RABGAP1L|ENST00000487987.1	+	174220711,174231144	174221164,174231245	0.769231
GM12878	chr3	194486599	194486632	194486631	-	High_confidence	4	4	8	0.243538	3.000000	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402688	194486659	MSTRG.18021.6	-	194402688,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194486659	1.000000
GM12878	chr6	132511317	132511344	132511328	-	RAMPAGE_only	3	3	13	0.395749	3.392747	chr6	132511239	132511617	LINE|L2|L2a	+	chr6	132445866	132513062	STX7|ENST00000367941.6	-	132445866,132463992,132468402,132469950,132470573,132471462,132472281,132475592,132503445,132513006	132460850,132464075,132468475,132470047,132470626,132471600,132472375,132475662,132503588,132513062	0.769231
GM12878	chr17	57444484	57444530	57444484	+	High_confidence	8	8	48	1.461228	4.761842	chr17	57444302	57444600	SINE|Alu|AluSg7	+	chr17	57444486	57596950	MSI2|ENST00000582772.1	+	57444486,57529675,57596867	57444752,57529724,57596950	0.500000
GM12878	chr20	15333389	15333438	15333389	+	RAMPAGE_only	8	8	25	0.761056	3.751629	chr20	15333320	15333463	LTR|ERV1?|LTR103_Mam	+	chr20	15196857	16053197	MACROD2|ENST00000402914.5	+	15196857,15229939,15431404,15499773,15862744,15885763,15933275,15937475,15967552,15986726,15987065,16041200,16044570,16049829	15197032,15230061,15431435,15499847,15862826,15885811,15933338,15937544,15967630,15986801,15987158,16041278,16044639,16053197	0.600000
GM12878	chr20	38988020	38988054	38988033	+	RAMPAGE_only	6	6	20	0.608845	3.471354	chr20	38988024	38988345	LINE|RTE-X|L4_B_Mam	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.550000
GM12878	chr12	121582273	121582286	121582273	-	High_confidence	12	12	30	0.913268	4.324863	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121439912	121582307	MSTRG.6134.10	-	121439912,121440815,121441069,121442156,121442991,121443679,121444011,121444449,121445274,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549459,121574546,121575780,121578801,121581023,121582235	121440075,121440977,121441233,121442836,121443030,121443793,121444272,121444536,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548983,121549638,121574593,121575859,121578946,121581134,121582307	0.666667
GM12878	chr6	31053448	31053449	31053448	+	High_confidence	109	121	126	3.835724	6.318276	chr6	31053266	31053607	LTR|ERVL-MaLR|THE1A	+	chr6	31053449	31059890	HCG22|NR_003948.2	+	31053449,31054099,31055709,31059407	31053531,31054516,31056910,31059890	0.825397
GM12878	chr17	8247329	8247353	8247329	+	RAMPAGE_only	3	3	18	0.547961	3.499228	chr17	8247305	8247608	SINE|Alu|AluSz	-	chr17	8249277	8270491	PFAS|NM_012393.2	+	8249277,8253858,8254165,8255026,8255501,8255804,8256266,8256523,8256834,8257806,8258070,8262919,8263108,8263574,8263774,8264211,8264469,8264894,8265287,8265555,8265861,8266233,8266752,8267027,8267371,8267550,8268532,8268953	8249339,8254079,8254301,8255132,8255691,8255910,8256407,8256648,8256963,8257938,8258199,8262993,8263265,8263636,8263936,8264337,8264601,8265125,8265468,8265639,8266017,8266353,8266898,8267235,8267463,8267665,8268856,8270491	0.555556
GM12878	chr11	67486070	67486071	67486070	+	RAMPAGE_only	4	4	7	0.213096	2.521641	chr11	67485980	67486421	LTR|ERV1|LTR1A2	-	chr11	67483515	67491108	AIP|NM_001302959.1	+	67483515,67487005,67489266,67490037,67490315,67490787	67483710,67487185,67489455,67490214,67490457,67491108	1.000000
GM12878	chr20	63981442	63981446	63981445	+	High_confidence	8	9	18	0.547961	3.616875	chr20	63981444	63981612	SINE|MIR|MIRb	+	chr20	63981134	64033100	PRPF6|ENST00000266079.4	+	63981134,63983046,63984906,63993406,63994915,63995326,63999044,63999602,64001076,64010199,64011284,64016722,64022756,64024554,64025938,64026981,64027602,64028477,64029376,64031917,64032840	63981316,63983215,63985025,63993485,63995092,63995482,63999139,63999759,64001239,64010318,64011503,64016845,64022878,64024693,64026058,64027158,64027736,64028569,64029491,64032044,64033100	0.666667
GM12878	chr9	98010994	98010995	98010994	+	RAMPAGE_only	221	287	310	9.437098	6.711031	chr9	98010844	98011068	LINE|L1|L1MC5	-	chr9	97983360	98015943	ANP32B|ENST00000339399.4	+	97983360,97994630,97998555,98004963,98011270,98012420,98015363	97983609,97994780,97998678,98005153,98011389,98012472,98015943	0.932258
GM12878	chr8	134563829	134563862	134563829	-	RAMPAGE_only	31	34	132	4.018377	6.146288	chr8	134563793	134563958	LTR|ERVL|LTR42	+	chr8	134478024	134565671	ZFAT|ENST00000518408.5	-	134478024,134509618,134512474,134520882,134532833,134565332	134478721,134509749,134512601,134521001,134532972,134565671	0.507576
GM12878	chr2	119311971	119311997	119311996	-	RAMPAGE_only	3	4	8	0.243538	2.750000	chr2	119311891	119312118	SINE|MIR|MIRb	+	chr2	119302443	119366682	C2orf76|ENST00000409877.5	-	119302443,119311621,119317465,119321153,119339826,119340158,119366356	119302548,119311703,119317503,119321204,119339971,119340361,119366682	0.500000
GM12878	chr3	122075165	122075190	122075165	+	RAMPAGE_only	147	147	237	7.214814	5.887933	chr3	122075191	122075670	LINE|CR1|L3	+	chr3	122077848	122121143	CD86|NM_006889.4	+	122077848,122091600,122103511,122106197,122109264,122118047,122119437	122078045,122091650,122103847,122106500,122109408,122118093,122121143	0.797468
GM12878	chr5	154038408	154038409	154038408	-	High_confidence	166	166	233	7.093045	6.002261	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.656652
GM12878	chr22	44181149	44181184	44181183	+	High_confidence	8	9	14	0.426192	3.235926	chr22	44181132	44181213	LINE|L2|L2a	-	chr22	44181335	44206622	PARVG|ENST00000475485.6	+	44181335,44181741,44183317,44185807,44186576,44189113,44190550,44192048,44196156,44196346,44198620,44205756,44206316	44181370,44181917,44183408,44185872,44187878,44189254,44190666,44192129,44196213,44196415,44198722,44205829,44206622	0.642857
GM12878	chr16	80892637	80892663	80892637	-	High_confidence	11	12	31	0.943710	4.453881	chr16	80892421	80892788	LTR|ERVL-MaLR|THE1B	-	chr16	80828734	80892596	PRCAT47|NR_131947.1	-	80828734,80837931,80840118,80892504	80830757,80838045,80840222,80892596	0.806452
GM12878	chr16	30471349	30471350	30471349	+	High_confidence	12	13	14	0.426192	3.546594	chr16	30471330	30471622	SINE|Alu|AluSx	-	chr16	30471586	30471703	RF00019|ENST00000410769.1	+	30471586	30471703	0.500000
GM12878	chr19	35899328	35899345	35899344	-	High_confidence	4	4	9	0.273980	2.725481	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35887951	35899737	NFKBID|NM_001321831.1	-	35887951,35889889,35890373,35895979,35896217,35896391,35896725,35896912,35897650,35898471,35898718,35899706	35888612,35890054,35890490,35896128,35896269,35896538,35896831,35897103,35897838,35898532,35898822,35899737	1.000000
GM12878	chr4	102687426	102687501	102687500	-	RAMPAGE_only	13	13	85	2.587591	5.519677	chr4	102686464	102687875	LINE|L2|L2b	+	chr4	102631588	102722925	MANBA|ENST00000645558.1	-	102631588,102634787,102635864,102639712,102650536,102657681,102664684,102668962,102671280,102671892,102673918,102689573,102690595,102714437,102722870	102632281,102635045,102636007,102639857,102650701,102657900,102664852,102669049,102671398,102672054,102674070,102689684,102690771,102714561,102722925	0.611765
GM12878	chr14	93375957	93376002	93375983	+	RAMPAGE_only	9	11	26	0.791499	4.363713	chr14	93375893	93376157	LTR|ERVL-MaLR|MSTC	+	chr14	93333218	93707272	UNC79|ENST00000256339.8	+	93333218,93467670,93474247,93477557,93487662,93496410,93497156,93523977,93528557,93529285,93532549,93537988,93540659,93542465,93571893,93572692,93575057,93577841,93580148,93582202,93586595,93586759,93593679,93597358,93600568,93603238,93612796,93617121,93618191,93621620,93630800,93634520,93637215,93641144,93643556,93646607,93653741,93653939,93655233,93659192,93662603,93673350,93682616,93686571,93688664,93690116,93691748,93694334,93704624,93706703	93333523,93467791,93474393,93477728,93487755,93496466,93497286,93524042,93528646,93529326,93532578,93538218,93540831,93542696,93572084,93572816,93575198,93578063,93580376,93582344,93586675,93586908,93593837,93597540,93600770,93603418,93613083,93617304,93618354,93622841,93630908,93634637,93637299,93641247,93643697,93646646,93653854,93654025,93655407,93659261,93662714,93673455,93682694,93686661,93688840,93690303,93691946,93694412,93704666,93707272	0.538462
GM12878	chr2	230944642	230944689	230944643	+	High_confidence	26	51	125	3.805281	5.059784	chr2	230944689	230944743	LINE|L1|L1MA3	+	chr2	230943721	230958912	MSTRG.15084.2	+	230943721,230951951,230956937	230944971,230952072,230958912	0.920000
GM12878	chr16	15897858	15897859	15897858	-	RAMPAGE_only	8	8	8	0.243538	2.500000	chr16	15897828	15897998	SINE|MIR|MIRb	-	chr16	15865718	15888649	FOPNL|NR_130755.1	-	15865718,15873490,15884007,15888557	15867516,15873627,15884205,15888649	1.000000
GM12878	chr7	1137361	1137378	1137377	-	High_confidence	4	4	15	0.456634	3.235926	chr7	1137251	1137469	LINE|L2|L2a	+	chr7	997005	1138240	C7orf50|ENST00000397098.7	-	997005,1000469,1009949,1127256,1137314	997804,1000551,1010143,1127386,1138240	0.800000
GM12878	chr10	46269580	46269610	46269609	-	High_confidence	18	20	61	1.856977	5.389433	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.885246
GM12878	chr19	17823626	17823627	17823626	-	RAMPAGE_only	70	70	70	2.130958	5.332505	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.957143
GM12878	chr19	43748972	43748993	43748972	-	RAMPAGE_only	2	2	10	0.304423	3.121928	chr19	43748951	43749147	DNA|TcMar-Tigger|Tigger4a	-	chr19	43747654	43754598	SMG9|ENST00000597586.5	-	43747654,43747977,43750591,43754375	43747897,43748052,43750747,43754598	1.000000
GM12878	chr12	643830	643882	643881	-	High_confidence	17	17	82	2.496265	4.193409	chr12	643825	644012	LINE|L2|L2c	+	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.951220
GM12878	chr17	44209889	44209893	44209889	-	High_confidence	8	9	14	0.426192	3.180833	chr17	44209869	44210073	SINE|MIR|MIRc	-	chr17	44207486	44209422	UBTF|ENST00000529947.1	-	44207486,44207698,44207863,44208618,44209351	44207597,44207770,44207911,44209001,44209422	0.714286
GM12878	chr5	34244738	34244816	34244780	-	High_confidence	7	13	69	2.100515	5.329185	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244796	MSTRG.19150.2	-	34175821,34179012,34182679,34200820,34218294,34239374,34244615	34175957,34179097,34182867,34200921,34218450,34239448,34244796	0.797101
GM12878	chr16	15651951	15651952	15651951	+	RAMPAGE_only	11	12	13	0.395749	3.584963	chr16	15651926	15652196	SINE|Alu|AluSx4	-	chr16	15650256	15691219	NDE1|ENST00000573203.5	+	15650256,15664735,15667285,15672689,15677800,15687374,15691143	15650294,15664861,15667439,15672771,15677949,15687511,15691219	0.846154
GM12878	chr18	76821826	76821838	76821837	+	High_confidence	13	13	20	0.608845	2.965584	chr18	76821814	76821851	SINE|Alu|Alu	+	chr18	76822606	76970727	ZNF236|NM_001306089.1	+	76822606,76849525,76851774,76868684,76871700,76875491,76878008,76880112,76881283,76895012,76899018,76904379,76905154,76908319,76910067,76910659,76912243,76913746,76915646,76919775,76923070,76925188,76927036,76927276,76927926,76937155,76947520,76955984,76959686,76960678,76968214	76822662,76849668,76851939,76868863,76871825,76875664,76878152,76880316,76881512,76895285,76899222,76904521,76905415,76908573,76910169,76910811,76912347,76913898,76915859,76920058,76923174,76925554,76927182,76927517,76928106,76937343,76947652,76956182,76959816,76960855,76970727	0.950000
GM12878	chr12	10363706	10363708	10363706	+	High_confidence	188	245	290	8.828253	6.298564	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363654	10379878	MSTRG.5023.1	+	10363654,10374034,10379701	10364033,10374127,10379878	0.924138
GM12878	chr7	120395828	120395848	120395833	+	RAMPAGE_only	266	339	1338	40.731733	6.880284	chr7	120395466	120395936	LTR|ERV1|MER66C	-	chr7	120365260	120750331	MSTRG.22384.4	+	120365260,120426666,120464039,120472231,120732902,120741533,120742509,120745779,120747680	120426634,120442987,120471985,120524297,120733065,120741629,120742602,120746027,120750331	0.980568
GM12878	chr3	170037608	170037628	170037624	+	High_confidence	3	3	9	0.273980	2.750000	chr3	170037624	170037724	DNA|hAT-Tip100|MamRep4096	+	chr3	170037928	170085403	GPR160|ENST00000355897.9	+	170037928,170038914,170079773,170083904	170038215,170039043,170079897,170085403	0.888889
GM12878	chr7	69858417	69858439	69858417	+	RAMPAGE_only	3	3	8	0.243538	2.750000	chr7	69858429	69858517	SINE|MIR|MIR3	+	chr7	69824570	70290554	AUTS2|ENST00000643587.1	+	69824570,69825779,69899285,70118131,70134535,70290367	69824687,69825875,69899498,70118233,70134571,70290554	1.000000
GM12878	chr12	92421799	92421803	92421799	-	RAMPAGE_only	9	10	21	0.639287	3.921928	chr12	92421421	92421865	LTR|ERVL|MLT2B1	+	chr12	92420093	92428146	CLLU1OS|ENST00000378487.3	-	92420093,92420998,92422546,92428094	92420460,92421173,92422636,92428146	0.857143
GM12878	chr1	220090402	220090433	220090420	-	High_confidence	18	20	50	1.522113	4.954449	chr1	220090323	220090490	SINE|Alu|AluJr	-	chr1	220057483	220090462	BPNT1|ENST00000469520.6	-	220057483,220059685,220062756,220067301,220069383,220072849,220073966,220079726,220089685,220090286	220058992,220059791,220062954,220067393,220069432,220072957,220074071,220079854,220089951,220090462	0.920000
GM12878	chr5	70401422	70401505	70401444	+	High_confidence	34	44	344	10.472135	6.149737	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70401128	70447526	MSTRG.19368.1	+	70401128,70415183,70417821,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70401668,70415389,70417919,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.970930
GM12878	chr14	22534362	22534366	22534365	+	RAMPAGE_only	14	14	30	0.913268	4.640224	chr14	22534337	22534566	SINE|MIR|MIRb	-	chr14	22547505	22552154	TRAC|ENST00000611116.1	+	22547505,22549637,22550556,22551604	22547778,22549682,22550664,22552154	0.800000
GM12878	chr10	110817762	110817786	110817785	+	RAMPAGE_only	12	12	20	0.608845	3.784184	chr10	110817495	110817997	LINE|L2|L2c	-	chr10	110644396	110839469	RBM20|ENST00000369519.3	+	110644396,110780800,110783365,110784340,110784791,110797507,110799786,110810382,110812277,110820071,110821274,110823479,110831060,110835867	110644645,110781884,110783427,110784432,110784889,110797648,110799918,110810462,110812947,110820176,110821935,110823614,110831182,110839469	0.950000
GM12878	chr3	190122034	190122069	190122034	-	High_confidence	4	6	17	0.517518	3.024397	chr3	190121809	190122109	SINE|Alu|AluSx	+	chr3	189988914	190121678	P3H2|ENST00000426003.1	-	189988914,189994093,189995289,190121536	189989038,189994283,189995442,190121678	0.647059
GM12878	chr1	221047130	221047133	221047132	+	High_confidence	178	224	273	8.310735	5.512446	chr1	221047132	221053554	LINE|L1|L1PA7	+	chr1	221046773	221076032	MSTRG.2302.1	+	221046773,221059241,221066958	221047200,221059418,221076032	0.750916
GM12878	chr4	48247281	48247304	48247281	-	RAMPAGE_only	2	2	8	0.243538	2.807355	chr4	48246183	48247878	LINE|L1|L1MB5	+	chr4	48136803	48228659	TEC|ENST00000505452.5	-	48136803,48138664,48138903,48141354,48145078,48145407,48146324,48149556,48150862,48156679,48167777,48168585,48170247,48171367,48176081,48228476	48137499,48138822,48139022,48141419,48145295,48145579,48146399,48149690,48150942,48156734,48167953,48168626,48170376,48171408,48176186,48228659	0.750000
GM12878	chr2	171433147	171433200	171433147	-	High_confidence	27	28	105	3.196436	5.577102	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.752381
GM12878	chr11	66100770	66100804	66100772	+	High_confidence	6	11	33	1.004594	4.250000	chr11	66100562	66101107	LTR|ERVL-MaLR|MLT1G1	-	chr11	66100762	66216250	PACS1|ENST00000527380.1	+	66100762,66193485,66210361,66211133,66216118	66100874,66193573,66210451,66211259,66216250	0.757576
GM12878	chr20	47412299	47412380	47412299	-	High_confidence	5	5	44	1.339459	4.879526	chr20	47412193	47412416	SINE|Alu|AluJr	+	chr20	47391928	47412327	LINC01754|ENST00000437920.1	-	47391928,47397148,47411267,47412069	47392097,47397345,47411393,47412327	0.727273
GM12878	chr1	166850134	166850135	166850134	+	RAMPAGE_only	6	6	6	0.182654	2.584963	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
GM12878	chr17	20106672	20106680	20106672	+	RAMPAGE_only	5	5	10	0.304423	2.503258	chr17	20106471	20106822	LTR|ERVL-MaLR|THE1B	+	chr17	20087021	20314755	SPECC1|ENST00000261503.9	+	20087021,20096630,20110426,20204332,20227412,20231757,20232199,20245925,20247218,20253504,20257450,20260191,20296960,20306022,20313975	20087051,20096798,20110562,20205912,20227620,20231831,20232405,20246071,20247319,20253586,20257607,20260294,20297077,20306082,20314755	0.900000
GM12878	chr19	15464745	15464769	15464745	-	High_confidence	6	6	30	0.913268	3.950212	chr19	15464743	15464783	SINE|MIR|MIRc	+	chr19	15451623	15464571	RASAL3|ENST00000343625.11	-	15451623,15452044,15452657,15453106,15454148,15454360,15454656,15456103,15456501,15457291,15458327,15458528,15460202,15461059,15461217,15461470,15464030,15464504	15451938,15452108,15452815,15453497,15454267,15454562,15454893,15456248,15456646,15457834,15458426,15458655,15460258,15461121,15461296,15461607,15464377,15464571	0.933333
GM12878	chr15	29312433	29312515	29312514	-	RAMPAGE_only	20	22	117	3.561743	5.504088	chr15	29312387	29314708	DNA|TcMar-Tigger|Tigger1	+	chr15	29123314	29196687	FAM189A1|ENST00000560021.1	-	29123314,29124686,29126266,29128788,29136365,29137033,29151733,29196429	29123655,29124761,29126491,29128864,29136501,29137194,29151841,29196687	0.709402
GM12878	chr22	50541367	50541389	50541388	+	High_confidence	255	290	831	25.297511	6.841891	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50541071	50543011	MSTRG.16707.1	+	50541071,50542566	50541456,50543011	0.908544
GM12878	chr6	128241305	128241324	128241323	-	High_confidence	7	7	14	0.426192	3.324863	chr6	128241276	128241454	DNA|hAT-Charlie|MER5A	+	chr6	128184431	128241299	PTPRK|ENST00000368205.7	-	128184431,128218921,128240034,128241222	128184725,128219096,128240150,128241299	0.928571
GM12878	chr2	214809181	214809199	214809182	+	High_confidence	4	7	18	0.547961	4.058814	chr2	214809056	214809183	DNA|hAT-Charlie|MER5A	+	chr2	214809161	214809645	MSTRG.14951.1	+	214809161	214809645	0.777778
GM12878	chr3	121731455	121731471	121731470	-	RAMPAGE_only	3	3	13	0.395749	3.392747	chr3	121731351	121731515	SINE|Alu|AluSc8	-	chr3	121729127	121730216	GOLGB1|ENST00000472829.1	-	121729127,121729864	121729340,121730216	0.692308
GM12878	chr8	39685045	39685046	39685045	+	High_confidence	17	17	19	0.578403	3.683542	chr8	39684703	39685147	LTR|ERV1|LTR2	+	chr8	39685129	39730062	ADAM18|ENST00000523755.5	+	39685129,39692599,39706789,39723747,39729897	39685412,39692680,39706904,39723907,39730062	0.947368
GM12878	chr9	2156865	2156867	2156865	+	High_confidence	9	15	18	0.547961	4.058814	chr9	2156730	2156964	LINE|L1|L1MB3	-	chr9	2157679	2193624	SMARCA2|NM_001289398.1	+	2157679,2161685,2181570,2182140,2186095,2191265,2192703	2157890,2161903,2181676,2182242,2186228,2191408,2193624	1.000000
GM12878	chr6	137218805	137218822	137218821	-	High_confidence	15	17	25	0.761056	4.088779	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.720000
GM12878	chr5	134070935	134070972	134070971	-	RAMPAGE_only	2	2	8	0.243538	2.500000	chr5	134070787	134070942	LINE|L1|L1ME4a	-	chr5	133971874	134005133	VDAC1|NM_003374.2	-	133971874,133973790,133975870,133980728,133990854,133991001,133992305,133992945,134004894	133972862,133973848,133976021,133980956,133990907,133991154,133992355,133993018,134005133	0.625000
GM12878	chrX	13734264	13734306	13734264	-	High_confidence	20	21	41	1.248132	4.621928	chrX	13734091	13734298	DNA|hAT-Charlie|MER20	+	chrX	13715536	13734545	TRAPPC2|ENST00000519382.1	-	13715536,13719870,13734049,13734524	13716678,13719982,13734185,13734545	0.512195
GM12878	chr12	110669173	110669204	110669203	-	RAMPAGE_only	373	466	1160	35.313012	6.991238	chr12	110669108	110669244	LINE|L2|L2b	+	chr12	110648685	110683267	HVCN1|ENST00000620084.4	-	110648685,110650167,110651216,110655233,110661163,110683224	110649475,110650280,110651448,110655338,110661448,110683267	0.775862
GM12878	chr13	25179953	25179966	25179965	-	High_confidence	2	3	8	0.243538	2.521641	chr13	25179771	25180118	LTR|ERVL-MaLR|MLT1J1	-	chr13	25172823	25180001	LINC00463|NR_120428.1	-	25172823,25173912,25176675,25179776	25173322,25174087,25176849,25180001	0.750000
GM12878	chr6	111844934	111844935	111844934	-	High_confidence	7	7	8	0.243538	2.521641	chr6	111844923	111845004	SINE|MIR|MIR3	-	chr6	111708016	111844944	FYN|ENST00000523570.5	-	111708016,111714346,111719804,111780565,111844776	111708020,111714443,111720062,111780635,111844944	0.500000
GM12878	chr2	11865632	11865637	11865632	+	RAMPAGE_only	2	2	8	0.243538	2.521641	chr2	11865438	11865637	LTR|ERVL|ERV3-16A3_I-int	+	chr2	11848621	11866284	MIR3681HG|ENST00000429878.1	+	11848621,11865849	11848744,11866284	0.750000
GM12878	chr19	55678421	55678427	55678421	+	RAMPAGE_only	4	4	9	0.273980	2.750000	chr19	55678409	55678486	LINE|L2|L2c	-	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.888889
GM12878	chr1	109619709	109619710	109619709	-	High_confidence	4	4	7	0.213096	2.521641	chr1	109619563	109619719	SINE|MIR|MIR	-	chr1	109608720	109619929	GNAT2|ENST00000622865.1	-	109608720,109610039,109610464,109612752,109619887	109608788,109610181,109610507,109612923,109619929	0.857143
GM12878	chr16	72627692	72627762	72627719	-	High_confidence	11	11	45	1.369901	4.696866	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72523331	72627686	LINC01572|ENST00000563823.6	-	72523331,72540577,72555264,72561972,72570450,72617182,72627534	72523415,72540611,72555326,72562086,72570515,72617234,72627686	0.533333
GM12878	chr19	10176821	10176836	10176831	-	RAMPAGE_only	5	7	22	0.669730	4.186704	chr19	10176575	10176865	SINE|Alu|AluSx	+	chr19	10154663	10194934	MSTRG.12363.18	-	10154663,10154904,10155852,10156390,10159657,10159841,10160017,10160383,10162666,10163325,10166597,10168329,10173089,10173870,10175539,10180349,10180777,10182040,10194819	10154773,10155056,10155945,10156509,10159767,10159922,10160063,10160418,10162748,10163360,10166685,10168364,10173174,10173905,10177367,10180569,10180885,10182077,10194934	1.000000
GM12878	chr22	31567323	31567337	31567323	+	RAMPAGE_only	4	4	11	0.334865	3.277613	chr22	31567316	31567500	LINE|L2|L2	-	chr22	31572762	31583934	SFI1|ENST00000476010.5	+	31572762,31575230,31578381,31583874	31573214,31575392,31578452,31583934	0.545455
GM12878	chr19	12734901	12734902	12734901	+	RAMPAGE_only	5	5	7	0.213096	2.584963	chr19	12734855	12735166	SINE|Alu|AluSp	-	chr19	12737138	12748323	ASNA1|ENST00000591090.5	+	12737138,12737458,12738510,12745376,12745608,12747196,12747394,12747972	12737193,12737666,12738658,12745525,12745759,12747304,12747592,12748323	0.571429
GM12878	chr6	109795198	109795232	109795198	+	RAMPAGE_only	4	4	9	0.273980	2.725481	chr6	109795095	109795251	SINE|Alu|AluYb8	-	chr6	109691311	109825428	FIG4|ENST00000230124.7	+	109691311,109715077,109716444,109727108,109732636,109735149,109738324,109741443,109743109,109743674,109760249,109762090,109763936,109765012,109766728,109776921,109784969,109786301,109789593,109791375,109792581,109796764,109825087	109691501,109715176,109716568,109727265,109732687,109735298,109738453,109741544,109743272,109743772,109760383,109762207,109763982,109765161,109766895,109777060,109785028,109786449,109789677,109791571,109792664,109796851,109825428	1.000000
GM12878	chr5	151158498	151158527	151158498	-	High_confidence	21	21	136	4.140146	6.008857	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.698529
GM12878	chr3	106256247	106256268	106256247	+	High_confidence	120	121	205	6.240662	5.594759	chr3	106255986	106256329	LTR|ERV1|MER61A	+	chr3	106256114	106266576	MSTRG.17408.1	+	106256114	106266576	0.965854
GM12878	chr6	41732665	41732693	41732692	-	RAMPAGE_only	25	26	56	1.704766	5.222180	chr6	41732628	41732733	SINE|MIR|MIR	-	chr6	41686528	41733853	TFEB|ENST00000394283.5	-	41686528,41687752,41687907,41689730,41690662,41691000,41732648	41687169,41687809,41688028,41689811,41690917,41691235,41733853	0.821429
GM12878	chr19	571641	571656	571641	-	High_confidence	3	4	11	0.334865	2.846439	chr19	571376	571615	LTR|ERV1|HERVIP10B3-int	-	chr19	567310	571734	AC009005.1|ENST00000590292.5	-	567310,571439,571696	567624,571596,571734	0.818182
GM12878	chr15	54583777	54583802	54583777	+	High_confidence	14	14	31	0.943710	4.324849	chr15	54583642	54584219	LTR|ERVL|MER73	+	chr15	54583605	54633324	MSTRG.8115.5	+	54583605,54622326,54623794,54626827	54584033,54622419,54623954,54633324	0.774194
GM12878	chr2	216030384	216030403	216030384	-	RAMPAGE_only	3	3	8	0.243538	3.000000	chr2	216030308	216030532	SINE|MIR|MIR	+	chr2	215945572	216032959	MREG|ENST00000420348.1	-	215945572,215947022,215996305,216032788	215945734,215947113,215996465,216032959	0.625000
GM12878	chr17	43283836	43283889	43283836	-	High_confidence	2	3	12	0.365307	2.617492	chr17	43283615	43283868	LTR|ERV1|HERV17-int	+	chr17	43283653	43284126	MSTRG.10834.1	-	43283653	43284126	0.666667
GM12878	chr3	187024609	187024625	187024609	+	High_confidence	3	3	14	0.426192	3.546594	chr3	187024583	187024927	LINE|L1|L1MC5a	+	chr3	187024687	187042927	ST6GAL1|ENST00000416235.5	+	187024687,187038741,187042653	187024858,187038873,187042927	0.714286
GM12878	chr12	124453522	124453540	124453522	-	RAMPAGE_only	2	2	9	0.273980	2.750000	chr12	124453412	124453547	LINE|L2|L2	-	chr12	124430640	124483769	NCOR2|ENST00000448008.1	-	124430640,124437929,124449814,124466172,124472951,124483595	124430787,124437996,124449867,124466286,124473131,124483769	0.555556
GM12878	chr8	123251176	123251180	123251179	+	High_confidence	34	34	62	1.887420	4.961210	chr8	123251043	123251381	LTR|ERVL-MaLR|MSTA	+	chr8	123251161	123256201	MSTRG.23470.1	+	123251161,123255837	123251299,123256201	0.887097
GM12878	chr9	128684459	128684493	128684459	-	High_confidence	59	65	399	12.146459	6.589483	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128674597	128684524	MSTRG.24448.1	-	128674597	128684524	0.869674
GM12878	chr2	25419736	25419780	25419779	-	RAMPAGE_only	3	4	12	0.365307	3.084963	chr2	25419758	25419866	SINE|MIR|MIR3	-	chr2	25419101	25652660	DTNB|ENST00000485845.5	-	25419101,25427534,25432885,25433909,25451547,25455404,25482795,25531472,25576837,25580720,25596085,25607235,25628170,25639013,25652593	25419535,25427631,25432999,25433995,25451635,25455494,25482873,25531597,25577004,25580826,25596240,25607321,25628384,25639094,25652660	0.500000
GM12878	chr7	603490	603543	603495	+	High_confidence	12	12	35	1.065479	4.729283	chr7	603435	603558	LINE|L2|L2c	+	chr7	603397	608502	LOC101926963|NR_110055.1	+	603397,607864	603616,608502	0.914286
GM12878	chr1	112956785	112956794	112956793	+	High_confidence	12	12	20	0.608845	3.826875	chr1	112956705	112956908	SINE|MIR|MIR	+	chr1	112956519	112968398	SLC16A1-AS1|ENST00000420168.1	+	112956519,112960476,112968034	112956956,112960575,112968398	0.550000
GM12878	chr2	213023205	213023206	213023205	-	RAMPAGE_only	8	8	11	0.334865	2.921928	chr2	213023185	213023268	SINE|tRNA-RTE|MamSINE1	+	chr2	213007356	213028727	MSTRG.14940.9	-	213007356,213013790,213021992,213022330	213008084,213013934,213022130,213028727	0.909091
GM12878	chr17	38701729	38701750	38701732	+	High_confidence	5	7	16	0.487076	3.625000	chr17	38701726	38701887	SINE|MIR|MIRb	-	chr17	38702451	38704747	AC006449.6|ENST00000612330.1	+	38702451	38704747	0.750000
GM12878	chrX	13755503	13755506	13755505	+	RAMPAGE_only	4	7	9	0.273980	2.725481	chrX	13755402	13755589	SINE|MIR|MIR	+	chrX	13734897	13769311	OFD1|ENST00000380550.6	+	13734897,13735247,13736477,13738845,13739001,13744414,13746318,13746779,13749426,13753367,13755150,13756577,13757659,13758336,13760114,13761084,13762343,13763744,13767126,13768053,13768717,13769065	13735083,13735346,13736678,13738914,13739032,13744519,13746455,13746953,13749533,13753441,13755242,13756767,13757790,13758448,13760720,13761211,13762444,13763855,13767284,13768224,13768785,13769311	0.888889
GM12878	chr5	119335974	119335975	119335974	+	RAMPAGE_only	12	12	12	0.365307	3.251629	chr5	119335656	119336199	LINE|L2|L2a	-	chr5	119333174	119393743	TNFAIP8|ENST00000513374.1	+	119333174,119392815	119333631,119393743	0.833333
GM12878	chr20	47412577	47412610	47412583	-	High_confidence	25	28	101	3.074667	5.376649	chr20	47412418	47412713	SINE|Alu|AluSz	+	chr20	47382549	47412691	MSTRG.15570.1	-	47382549,47397148,47412069	47385019,47397345,47412691	0.851485
GM12878	chr8	64817574	64817619	64817618	-	High_confidence	5	5	29	0.882825	4.384517	chr8	64817241	64817838	DNA|hAT-Charlie|Charlie2b	-	chr8	64801235	64817573	AC104232.1|ENST00000522106.5	-	64801235,64802367,64804172,64805588,64817323	64801526,64802485,64804278,64805698,64817573	0.724138
GM12878	chr19	9621578	9621592	9621591	+	High_confidence	4	4	10	0.304423	2.947703	chr19	9621594	9621665	SINE|Alu|FLAM_C	+	chr19	9621516	9634862	ZNF561-AS1|ENST00000587536.5	+	9621516,9626783,9632227,9633459	9621645,9626860,9632417,9634862	0.700000
GM12878	chr19	2096053	2096092	2096091	-	High_confidence	113	123	297	9.041349	6.239972	chr19	2095739	2096043	SINE|Alu|AluSx	-	chr19	2073136	2096320	MSTRG.12137.4	-	2073136,2076810,2078139,2085174,2095240	2073424,2077013,2078679,2085328,2096320	0.976431
GM12878	chr4	141658188	141658189	141658188	+	RAMPAGE_only	7	7	7	0.213096	2.807355	chr4	141658037	141658385	LTR|ERVL-MaLR|MSTA	+	chr4	141636946	141733123	IL15|ENST00000529613.5	+	141636946,141688821,141719365,141720468,141721923,141727939,141729846,141732737	141637224,141689035,141719476,141720566,141722008,141727984,141729984,141733123	0.714286
GM12878	chr1	206563245	206563290	206563289	+	RAMPAGE_only	7	9	26	0.791499	4.074876	chr1	206563101	206563292	LTR|ERVL-MaLR|MLT1J2	-	chr1	206557164	206589267	RASSF5|ENST00000577571.5	+	206557164,206583268,206584386,206585179,206586825	206557693,206583379,206584684,206585295,206589267	0.807692
GM12878	chr6	41299230	41299249	41299248	-	RAMPAGE_only	2	3	6	0.182654	2.584963	chr6	41298371	41299471	LINE|L1|L1PA15	+	chr6	41273604	41286745	TREM1|NM_018643.4	-	41273604,41280960,41282394,41286606	41276230,41281153,41282751,41286745	0.833333
GM12878	chr22	39021125	39021156	39021155	+	High_confidence	548	557	2759	83.990173	6.221616	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.960493
GM12878	chr2	113625664	113625679	113625674	-	RAMPAGE_only	3	4	9	0.273980	2.750000	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	0.666667
GM12878	chr2	233357034	233357073	233357066	+	RAMPAGE_only	24	25	66	2.009189	5.495219	chr2	233356905	233357200	LTR|ERVL|LTR33A_	-	chr2	233354571	233392399	DGKD|ENST00000442524.4	+	233354571,233388256,233390402,233392069	233354674,233388367,233390483,233392399	0.515152
GM12878	chr12	10363662	10363663	10363662	+	High_confidence	11	13	17	0.517518	3.572469	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363654	10379878	MSTRG.5023.1	+	10363654,10374034,10379701	10364033,10374127,10379878	0.529412
GM12878	chr9	137127628	137127647	137127628	-	RAMPAGE_only	6	6	11	0.334865	2.521928	chr9	137127599	137128119	LTR|ERV1|LTR2C	-	chr9	137126068	137129801	MSTRG.24573.1	-	137126068	137129801	0.636364
GM12878	chr1	183841818	183841819	183841818	+	RAMPAGE_only	5	6	8	0.243538	2.807355	chr1	183841821	183842020	DNA|TcMar-Tigger|Tigger4a	+	chr1	183805119	183928531	RGL1|ENST00000360851.3	+	183805119,183806374,183847565,183865995,183880615,183883785,183884722,183888473,183892076,183897807,183900149,183902567,183904849,183907011,183912081,183916446,183922221,183926104	183805324,183806485,183847774,183866073,183880800,183883910,183884938,183888577,183892161,183897897,183900236,183902600,183904971,183907101,183912268,183916701,183922336,183928531	0.500000
GM12878	chr7	135171613	135171632	135171631	+	RAMPAGE_only	13	13	36	1.095921	4.440351	chr7	135171263	135171741	LTR|ERV1|LTR2B	+	chr7	135170487	135182053	MSTRG.22502.1	+	135170487,135171699	135171153,135182053	1.000000
GM12878	chr12	94871179	94871182	94871179	-	RAMPAGE_only	51	68	122	3.713955	6.146521	chr12	94870996	94871326	LTR|ERVL-MaLR|MLT1A0	-	chr12	94843346	94873771	MSTRG.5800.8	-	94843346,94850671	94850248,94873771	0.598361
GM12878	chr6	32193307	32193337	32193307	-	High_confidence	7	7	31	0.943710	3.607475	chr6	32193217	32193521	SINE|Alu|AluSx	+	chr6	32190766	32193118	GPSM3|ENST00000619085.1	-	32190766,32191708,32192147,32192471,32193040	32191503,32191908,32192250,32192530,32193118	0.935484
GM12878	chr19	48868473	48868537	48868506	-	High_confidence	11	16	66	2.009189	5.388759	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868454	PLEKHA4|ENST00000355496.9	-	48837096,48838016,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868454	0.969697
GM12878	chr11	59173066	59173070	59173066	+	High_confidence	3	3	9	0.273980	3.000000	chr11	59172914	59173138	DNA|hAT-Tip100?|MamRep1879	-	chr11	59172491	59208587	DTX4|ENST00000227451.3	+	59172491,59181738,59188734,59189161,59191113,59192097,59195207,59199683,59204675	59172806,59182462,59188796,59189323,59191175,59192250,59195369,59199773,59208587	0.666667
GM12878	chr11	14325427	14325444	14325443	-	High_confidence	24	25	41	1.248132	4.439223	chr11	14325310	14325597	SINE|Alu|AluY	-	chr11	14277963	14325461	MSTRG.3717.2	-	14277963,14281601,14294470,14294759,14295767,14325164	14279424,14281720,14294579,14294862,14295855,14325461	0.975610
GM12878	chr15	75198907	75198976	75198916	+	High_confidence	10	11	84	2.557149	5.735362	chr15	75198623	75199037	LTR|ERV1|MER51A	-	chr15	75198891	75212169	C15orf39|ENST00000360639.6	+	75198891,75205998,75210748	75199161,75208824,75212169	0.666667
GM12878	chr6	137218701	137218726	137218725	-	High_confidence	35	39	90	2.739803	5.597083	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.977778
GM12878	chr9	5517063	5517069	5517068	+	RAMPAGE_only	25	27	58	1.765651	4.789312	chr9	5517066	5517116	SINE|Alu|AluJo	+	chr9	5510569	5571254	PDCD1LG2|ENST00000397747.4	+	5510569,5522532,5534744,5549334,5557617,5563161,5569953	5510803,5522601,5535050,5549604,5557752,5563211,5571254	0.741379
GM12878	chr9	105500651	105500689	105500688	+	High_confidence	478	531	1242	37.809277	6.630544	chr9	105500002	105500744	LINE|L1|L1MCa	-	chr9	105500658	105552433	FSD1L|ENST00000374707.1	+	105500658,105506398,105508616,105512806,105534492,105535066,105539262,105546357	105500763,105506608,105508715,105512936,105534593,105535318,105539351,105552433	0.982287
GM12878	chrX	19801030	19801052	19801030	-	RAMPAGE_only	8	8	36	1.095921	4.675698	chrX	19800954	19801099	LTR|ERVL-MaLR|MLT1L	+	chrX	19533964	19799799	SH3KBP1|NM_001024666.2	-	19533964,19537716,19541924,19545921,19549973,19569102,19588642,19592066,19594948,19607937,19631863,19645399,19683822,19695611,19706880,19746317,19799633	19536458,19537780,19542193,19546050,19550083,19569188,19588802,19592147,19595000,19608045,19631958,19645475,19684028,19695741,19706984,19746441,19799799	0.694444
GM12878	chr1	151166660	151166680	151166679	+	High_confidence	6	6	11	0.334865	3.027169	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	0.909091
GM12878	chr9	37010297	37010331	37010330	-	RAMPAGE_only	11	11	33	1.004594	3.824253	chr9	37010298	37010389	SINE|MIR|MIR3	-	chr9	36840557	37002675	PAX5|ENST00000524340.5	-	36840557,36846842,36882003,36923354,36930887,36966548,37002647	36840636,36846929,36882105,36923484,36930944,36966724,37002675	0.909091
GM12878	chr6	79631242	79631274	79631242	+	High_confidence	4	4	17	0.517518	3.625000	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.941176
GM12878	chr12	1099895	1099922	1099905	+	RAMPAGE_only	8	10	41	1.248132	5.064869	chr12	1099835	1100147	SINE|Alu|AluSx3	-	chr12	1083572	1244956	ERC1|ENST00000536573.6	+	1083572,1104749,1110191,1112214,1115865,1141619,1180539,1181924,1183280,1189858,1236768,1244542	1083580,1104824,1110347,1112307,1116033,1141787,1180677,1182065,1183421,1190052,1236904,1244956	0.731707
GM12878	chr20	47500695	47500798	47500711	+	RAMPAGE_only	17	17	112	3.409532	4.814386	chr20	47500403	47500991	LINE|L2|L2a	-	chr20	47501856	47656877	NCOA3|NM_006534.3	+	47501856,47583182,47622228,47623910,47625380,47627001,47627560,47627921,47633495,47634047,47635321,47635890,47637647,47639007,47639576,47639924,47642212,47647072,47649004,47650981,47652405,47652930,47653405	47502019,47583261,47622330,47624083,47625481,47627176,47627749,47628023,47633636,47634195,47635713,47636762,47637783,47639202,47639822,47640051,47642384,47647366,47649097,47651276,47652580,47653072,47656877	0.892857
GM12878	chr11	66100705	66100732	66100705	+	High_confidence	4	4	16	0.487076	3.323231	chr11	66100562	66101107	LTR|ERVL-MaLR|MLT1G1	-	chr11	66100762	66216250	PACS1|ENST00000527380.1	+	66100762,66193485,66210361,66211133,66216118	66100874,66193573,66210451,66211259,66216250	0.750000
GM12878	chr10	79285465	79285466	79285465	+	High_confidence	5	5	7	0.213096	2.807355	chr10	79285331	79285491	SINE|MIR|MIR	-	chr10	79285452	79316528	ZMIZ1|ENST00000446377.3	+	79285452,79289776,79290744,79290958,79292233,79292780,79293460,79296470,79297612,79298405,79299052,79300731,79302106,79304017,79305163,79305535,79306102,79307407,79310923,79312641	79285621,79289889,79290796,79291176,79292356,79292863,79293653,79296653,79297690,79298580,79299188,79300942,79302212,79304175,79305231,79305601,79306344,79307571,79311184,79316528	0.857143
GM12878	chr4	56977879	56977900	56977879	+	High_confidence	3	3	10	0.304423	3.121928	chr4	56977901	56978210	SINE|Alu|AluY	+	chr4	56977741	57031158	POLR2B|ENST00000381227.5	+	56977741,56978639,56986353,56990747,56994403,56994646,56995250,56999616,57005245,57005599,57006815,57010360,57010747,57010988,57015501,57017042,57017559,57020898,57022151,57023329,57023661,57024004,57024885,57025376,57030203,57030898	56977808,56979004,56986426,56990898,56994516,56994866,56995409,56999781,57005442,57005719,57007002,57010504,57010887,57011100,57015656,57017241,57017728,57020995,57022246,57023580,57023751,57024112,57024999,57025537,57030399,57031158	0.800000
GM12878	chr5	333544	333545	333544	+	RAMPAGE_only	5	5	8	0.243538	3.000000	chr5	333315	333615	SINE|Alu|AluSx1	+	chr5	343527	353911	AHRR|ENST00000504625.1	+	343527,343892,353729	343708,343964,353911	0.500000
GM12878	chr1	206051233	206051247	206051233	+	High_confidence	3	3	6	0.182654	2.584963	chr1	206051186	206051329	DNA|TcMar-Mariner|MARNA	+	chr1	206051790	206053101	BX571818.1|ENST00000582619.1	+	206051790,206053020	206052001,206053101	0.500000
GM12878	chr15	54583960	54583987	54583986	+	High_confidence	143	169	853	25.967241	6.889978	chr15	54583642	54584219	LTR|ERVL|MER73	+	chr15	54583605	54633324	MSTRG.8115.5	+	54583605,54622326,54623794,54626827	54584033,54622419,54623954,54633324	0.905041
GM12878	chr5	134875055	134875087	134875055	+	High_confidence	6	7	34	1.035037	4.631981	chr5	134874872	134875108	SINE|MIR|MIRb	-	chr5	134875095	134888180	TXNDC15|ENST00000508810.1	+	134875095,134887694	134875188,134888180	0.882353
GM12878	chr4	8435945	8436026	8435953	-	RAMPAGE_only	73	73	181	5.510048	6.344132	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.524862
GM12878	chr1	46332137	46332179	46332178	-	High_confidence	573	583	921	28.037314	4.891827	chr1	46332068	46332557	LTR|ERV1|LTR2B	-	chr1	46278400	46332168	MSTRG.850.4	-	46278400,46279181,46279491,46280191,46280395,46281124,46285361,46297562,46298283,46303123,46331824	46279084,46279257,46279614,46280290,46280560,46281385,46286499,46297633,46298370,46303812,46332168	0.812161
GM12878	chr1	18944113	18944133	18944132	-	High_confidence	10	10	16	0.487076	3.456565	chr1	18944044	18944145	SINE|MIR|MIR3	+	chr1	18849272	18944192	MSTRG.335.2	-	18849272,18854212,18857330,18858289,18859474,18874462,18875381,18876314,18877207,18877415,18879299,18881699,18883123,18883278,18885283,18885472,18886463,18889361,18890011,18908538,18910341,18911383,18911962,18916902,18918361,18919677,18921060,18944061	18849550,18854986,18857618,18858462,18859699,18874581,18875503,18876467,18877255,18877612,18879373,18881887,18883198,18883428,18885398,18885628,18886511,18889454,18890193,18908666,18910472,18911476,18912083,18917042,18918502,18919773,18921121,18944192	0.937500
GM12878	chr12	110669776	110669821	110669776	-	RAMPAGE_only	10	10	45	1.369901	4.879526	chr12	110669773	110670042	SINE|Alu|AluSx	+	chr12	110648685	110683267	HVCN1|ENST00000620084.4	-	110648685,110650167,110651216,110655233,110661163,110683224	110649475,110650280,110651448,110655338,110661448,110683267	0.577778
GM12878	chr16	76579560	76579576	76579560	+	RAMPAGE_only	2	2	8	0.243538	2.750000	chr16	76579332	76579691	LTR|ERV1|MER57C2	+	chr16	76553416	76819624	AC104151.1|ENST00000563764.2	+	76553416,76553835,76635496,76819585	76553501,76553907,76635623,76819624	0.750000
GM12878	chr3	72100298	72100306	72100305	-	High_confidence	9	9	19	0.578403	3.725481	chr3	72100285	72100568	DNA|hAT-Charlie|MER102b	-	chr3	72092428	72100869	LINC00877|ENST00000462492.5	-	72092428,72099903,72100787	72092474,72100010,72100869	0.578947
GM12878	chr18	45874563	45874576	45874571	-	RAMPAGE_only	22	24	64	1.948304	4.007452	chr18	45874402	45874766	LTR|ERVL-MaLR|THE1B	-	chr18	45847608	45867750	EPG5|ENST00000590854.5	-	45847608,45855572,45857852,45858565,45860103,45865614,45866797,45867562	45852649,45855687,45858068,45858782,45860346,45865759,45867007,45867750	0.937500
GM12878	chr6	111766654	111766691	111766690	-	RAMPAGE_only	5	5	15	0.456634	3.664498	chr6	111766509	111766885	LTR|ERVL-MaLR|THE1C	-	chr6	111702877	111759925	FYN|ENST00000523322.5	-	111702877,111703998,111707921,111714346,111719804,111740980,111759844	111703034,111704102,111708020,111714443,111720062,111741093,111759925	0.733333
GM12878	chr1	39026135	39026145	39026135	+	High_confidence	3	3	7	0.213096	2.807355	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
GM12878	chr17	69503978	69503998	69503997	+	RAMPAGE_only	6	8	27	0.821941	4.014147	chr17	69504024	69504180	SINE|MIR|MIR3	+	chr17	69505447	69521826	MAP2K6|ENST00000591445.1	+	69505447,69516854,69517499,69519312	69505846,69516903,69517613,69521826	0.888889
GM12878	chr9	111284841	111284875	111284874	-	High_confidence	95	96	184	5.601374	5.983084	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.782609
GM12878	chr14	72477697	72477703	72477702	+	RAMPAGE_only	3	3	8	0.243538	2.807355	chr14	72477516	72477826	SINE|Alu|AluSx	+	chr14	72459668	72562754	RGS6|ENST00000554782.1	+	72459668,72464690,72465757,72470006,72472871,72474624,72476741,72478267,72495151,72510153,72518350,72536185,72540040,72562714	72459683,72464717,72465822,72470083,72472953,72474699,72476840,72478329,72495262,72510279,72518537,72536275,72540094,72562754	0.625000
GM12878	chr5	128082243	128082276	128082264	-	High_confidence	38	46	262	7.975870	6.306638	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127940425	128082881	MSTRG.19729.1	-	127940425,127956803,127966162,128061143,128082734	127941220,127956921,127966928,128061244,128082881	0.664122
GM12878	chr4	10109244	10109255	10109244	-	RAMPAGE_only	7	8	15	0.456634	3.378783	chr4	10109060	10109263	SINE|MIR|MIRb	-	chr4	10097709	10106556	WDR1|ENST00000264785.11	-	10097709,10098991,10103895,10106428	10097891,10099139,10103986,10106556	0.800000
GM12878	chr2	23939508	23939531	23939527	+	High_confidence	4	4	10	0.304423	2.721928	chr2	23939241	23939827	LTR|ERV1|MER92B	-	chr2	23940418	24004909	UBXN2A|ENST00000309033.4	+	23940418,23958300,23971275,23976968,23982895,23984672,23999671	23940648,23958355,23971414,23977075,23983033,23984831,24004909	0.800000
GM12878	chr15	56369515	56369549	56369515	+	RAMPAGE_only	17	17	56	1.704766	5.289149	chr15	56369356	56369614	SINE|Alu|AluJb	-	chr15	56365446	56398341	TEX9|ENST00000558083.2	+	56365446,56373440,56383951,56388471,56389317,56391242,56394164,56394660	56365670,56373504,56384031,56388520,56389400,56391418,56394247,56398341	0.678571
GM12878	chr12	122889180	122889181	122889180	-	High_confidence	8	8	11	0.334865	3.121928	chr12	122889046	122889227	LINE|L2|L2b	-	chr12	122867414	122890159	VPS37B|ENST00000371248.3	-	122867414,122868479,122870889,122888519	122867607,122868562,122871061,122890159	0.636364
GM12878	chr19	6592522	6592546	6592545	-	RAMPAGE_only	14	15	70	2.130958	5.518499	chr19	6592218	6592507	SINE|Alu|AluJo	-	chr19	6585838	6591152	CD70|NM_001252.4	-	6585838,6590102,6590840	6586405,6590136,6591152	0.571429
GM12878	chr9	20658568	20658624	20658607	+	High_confidence	48	67	510	15.525548	6.329686	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658318	20675229	MSTRG.23766.3	+	20658318,20673619	20658826,20675229	0.647059
GM12878	chr17	77444777	77444781	77444777	+	RAMPAGE_only	4	7	12	0.365307	3.418296	chr17	77444674	77445002	LINE|L2|L2	-	chr17	77450530	77500596	SEPT9|NM_001113496.1	+	77450530,77482143,77487423,77488239,77488726,77490741,77492620,77492979,77497314,77498522	77450786,77482335,77487552,77488321,77488864,77490859,77492716,77493076,77497366,77500596	0.750000
GM12878	chr12	31749459	31749473	31749466	+	High_confidence	9	9	44	1.339459	4.195540	chr12	31749068	31749596	LTR|ERV1|LTR8B	-	chr12	31749389	31755121	MSTRG.5217.1	+	31749389,31754760	31749585,31755121	0.863636
GM12878	chr15	41947318	41947319	41947318	-	RAMPAGE_only	6	6	6	0.182654	2.584963	chr15	41947305	41947416	SINE|MIR|MIRc	+	chr15	41899439	41972557	EHD4|NM_139265.3	-	41899439,41909698,41919209,41943066,41953763,41972258	41901181,41909863,41919622,41943164,41953940,41972557	0.500000
GM12878	chr1	213070741	213070748	213070747	+	RAMPAGE_only	9	9	16	0.487076	3.577820	chr1	213070430	213070829	LTR|ERV1|MER57B1	-	chr1	213051254	213274773	RPS6KC1|ENST00000366960.7	+	213051254,213071005,213077695,213104453,213117316,213129526,213167857,213176399,213230496,213232122,213240701,213242568,213261557,213262720,213272523	213051509,213071041,213077816,213104569,213117410,213129889,213167973,213176492,213230544,213232255,213242297,213242658,213261640,213262816,213274773	0.875000
GM12878	chr16	30660952	30660974	30660955	+	High_confidence	17	17	69	2.100515	4.966304	chr16	30660701	30661093	LINE|L2|L2c	-	chr16	30661321	30664516	FBRS|ENST00000482749.1	+	30661321,30662419,30662558,30663041,30664214	30661333,30662468,30662859,30663102,30664516	0.956522
GM12878	chr10	86965876	86965877	86965876	+	RAMPAGE_only	4	4	6	0.182654	2.584963	chr10	86965666	86966223	LTR|ERV1|LTR48B	-	chr10	86968191	86970915	ADIRF|ENST00000372013.7	+	86968191,86970199,86970475	86968605,86970262,86970915	0.666667
GM12878	chr16	11964470	11964502	11964470	-	RAMPAGE_only	11	11	52	1.582997	5.158563	chr16	11964417	11964713	SINE|Alu|AluSx1	-	chr16	11933622	11976643	NPIPB2|ENST00000532936.1	-	11933622,11933824,11937539,11956143,11963890,11976567	11933661,11933924,11937668,11956237,11964026,11976643	0.596154
GM12878	chr19	18417154	18417168	18417165	+	RAMPAGE_only	7	8	19	0.578403	3.197160	chr19	18417203	18417319	LINE|L2|L2c	+	chr19	18419335	18434562	SSBP4|NM_032627.4	+	18419335,18427350,18427751,18427897,18430840,18431352,18431646,18431792,18431999,18432146,18432558,18432699,18432828,18432972,18433134,18433584,18433709,18434216	18419707,18427423,18427813,18427982,18430930,18431418,18431706,18431862,18432070,18432214,18432604,18432735,18432883,18433043,18433213,18433613,18433817,18434562	0.947368
GM12878	chr2	96303177	96303178	96303177	-	RAMPAGE_only	25	27	32	0.974152	4.215061	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.937500
GM12878	chr13	45701370	45701372	45701371	-	High_confidence	62	113	140	4.261915	5.630962	chr13	45701225	45701731	LTR|ERV1|LTR45C	-	chr13	45680183	45701184	LINC01055|ENST00000435067.2	-	45680183,45682301,45685063,45701026	45681491,45682419,45685200,45701184	0.657143
GM12878	chr2	223950894	223950895	223950894	+	RAMPAGE_only	6	7	9	0.273980	3.169925	chr2	223950874	223951178	LINE|L2|L2a	-	chr2	223957403	223967714	MRPL44|ENST00000258383.3	+	223957403,223959533,223963755,223966862	223957651,223960002,223963934,223967714	0.666667
GM12878	chr1	28506367	28506431	28506430	+	High_confidence	13	17	51	1.552555	4.583465	chr1	28506187	28506484	SINE|Alu|AluSx	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.921569
GM12878	chr6	144349218	144349284	144349250	+	RAMPAGE_only	16	20	93	2.831129	4.526500	chr6	144349009	144349307	SINE|Alu|AluY	-	chr6	144344100	144678552	MSTRG.21340.4	+	144344100,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405	144344304,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678552	0.935484
GM12878	chr12	25057828	25057833	25057828	+	RAMPAGE_only	4	4	8	0.243538	2.521641	chr12	25057654	25058503	LINE|L1|L1ME2	-	chr12	25052944	25089677	LRMP|ENST00000554272.5	+	25052944,25061591,25062819,25063722,25066364,25069349,25079243,25079397,25079701,25083422,25088099,25089613	25052956,25061653,25062900,25063816,25066512,25069431,25079290,25079462,25079763,25083493,25088157,25089677	0.500000
GM12878	chr16	81801954	81801968	81801954	+	RAMPAGE_only	6	6	13	0.395749	3.238901	chr16	81801668	81801980	SINE|Alu|AluSz	-	chr16	81798465	81869233	PLCG2|ENST00000565400.5	+	81798465,81854443,81858262,81859115,81869213	81798982,81854587,81858356,81859163,81869233	0.615385
GM12878	chr18	69947872	69947907	69947872	-	High_confidence	66	86	477	14.520954	6.203199	chr18	69947667	69947857	LINE|L2|L2a	-	chr18	69862955	69947853	CD226|NM_001303618.1	-	69862955,69867356,69873143,69895700,69946733,69947360	69864439,69867411,69873246,69896045,69947069,69947853	0.987421
GM12878	chr5	77491273	77491310	77491309	-	High_confidence	4	4	21	0.639287	3.916127	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77453865	77491285	WDR41|ENST00000504895.5	-	77453865,77459061,77463094,77464760,77489456,77491192	77453928,77459124,77463226,77464809,77489572,77491285	0.761905
GM12878	chrX	53716484	53716568	53716526	-	RAMPAGE_only	12	16	85	2.587591	5.535795	chrX	53716393	53716754	LTR|ERVL-MaLR|MLT1L	+	chrX	53532095	53686729	HUWE1|NM_031407.6	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602563,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062,53680048,53686269,53686587	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654131,53680186,53686368,53686729	0.694118
GM12878	chr17	28902329	28902348	28902329	-	High_confidence	12	12	26	0.791499	4.085055	chr17	28901942	28902451	LINE|L2|L2b	+	chr17	28901111	28902126	DHRS13|ENST00000581759.1	-	28901111,28901492	28901301,28902126	0.884615
GM12878	chr11	121590549	121590552	121590549	+	High_confidence	8	8	16	0.487076	3.773557	chr11	121590407	121590570	DNA|hAT-Charlie|MER5A1	+	chr11	121590418	121629684	SORL1|ENST00000527934.1	+	121590418,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121590897,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121629684	0.937500
GM12878	chr1	170071518	170071522	170071521	-	RAMPAGE_only	6	6	11	0.334865	3.121928	chr1	170071399	170071834	LTR|ERVL-MaLR|MSTB2	-	chr1	169921325	170068917	KIFAP3|ENST00000367765.5	-	169921325,169954010,169961045,169972512,169978084,169981971,169982701,169983269,169984581,169992154,170016461,170024417,170031885,170034371,170035453,170038289,170039232,170046711,170055304,170067503	169921781,169954110,169961235,169972598,169978183,169982097,169982867,169983382,169984690,169992255,170016624,170024596,170031984,170034496,170035553,170038431,170039288,170046866,170055436,170068917	0.818182
GM12878	chr18	71011500	71011506	71011500	-	High_confidence	5	5	9	0.273980	2.503258	chr18	71011394	71011774	LTR|ERV1|MER57E1	-	chr18	71000476	71011490	AC090415.2|ENST00000584078.1	-	71000476,71001713,71011439	71000624,71001888,71011490	1.000000
GM12878	chr17	59619894	59619923	59619894	+	High_confidence	3417	4629	16835	512.495312	5.272260	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.973151
GM12878	chr19	6924870	6924871	6924870	+	RAMPAGE_only	9	9	9	0.273980	2.503258	chr19	6924903	6925061	LINE|L2|L2c	+	chr19	6887578	6940451	ADGRE1|ENST00000381404.8	+	6887578,6890480,6896397,6897427,6901874,6903809,6904035,6906432,6908688,6913652,6916248,6919547,6921712,6924677,6926365,6928144,6934986,6937242,6937543,6940023	6887639,6890543,6896541,6897547,6902021,6903950,6904182,6906521,6908772,6913830,6916368,6919747,6921883,6924872,6926601,6928310,6935078,6937411,6937648,6940451	1.000000
GM12878	chr11	14325246	14325278	14325277	-	High_confidence	36	36	116	3.531301	5.903458	chr11	14325155	14325289	SINE|MIR|MIR	+	chr11	14277963	14325461	MSTRG.3717.2	-	14277963,14281601,14294470,14294759,14295767,14325164	14279424,14281720,14294579,14294862,14295855,14325461	0.948276
GM12878	chr9	37187453	37187484	37187476	+	High_confidence	134	235	739	22.496824	5.626147	chr9	37187210	37187548	DNA|hAT-Charlie|MER1B	-	chr9	37187444	37354802	MSTRG.23899.7	+	37187444,37302187,37304187,37305543,37327798,37349356,37354709	37187571,37302231,37304313,37305714,37327834,37349452,37354802	0.879567
GM12878	chr3	170045493	170045515	170045493	+	RAMPAGE_only	4	4	13	0.395749	3.251629	chr3	170045282	170045619	SINE|Alu|AluSc8	+	chr3	170049854	170084461	GPR160|ENST00000485735.6	+	170049854,170079773,170083904	170049904,170079897,170084461	0.615385
GM12878	chr6	32632907	32632908	32632907	+	High_confidence	36	36	36	1.095921	4.760067	chr6	32632878	32633021	LTR|ERVL-MaLR|MLT1H	+	chr6	32632831	32746719	MSTRG.20688.2	+	32632831,32637420,32641309,32641971,32642609,32642951,32746627	32632909,32637540,32641558,32642253,32642784,32642997,32746719	1.000000
GM12878	chrX	283490	283509	283508	+	High_confidence	13	25	45	1.369901	5.225186	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.933333
GM12878	chr14	95516119	95516123	95516122	+	High_confidence	170	339	517	15.738644	5.993945	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.965184
GM12878	chr10	65570519	65570537	65570519	+	High_confidence	3	4	12	0.365307	3.084963	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570535	65585775	LINC01515|ENST00000608678.5	+	65570535,65571424,65572934,65581611,65585484	65570759,65571579,65573056,65581673,65585775	0.833333
GM12878	chr19	48270795	48270829	48270828	+	High_confidence	6	6	11	0.334865	3.095795	chr19	48270796	48271084	SINE|Alu|AluYc	+	chr19	48271055	48287070	ZNF114|ENST00000600687.5	+	48271055,48271286,48279730,48282370,48285760	48271119,48271449,48279808,48282497,48287070	0.909091
GM12878	chr11	32132656	32132662	32132656	+	High_confidence	10	11	17	0.517518	3.852169	chr11	32132461	32132828	LTR|ERVL-MaLR|THE1B	+	chr11	32132698	32143579	AL078612.2|ENST00000525133.1	+	32132698,32137120,32143143	32132786,32137242,32143579	0.764706
GM12878	chr12	92061934	92061939	92061938	-	RAMPAGE_only	82	89	167	5.083856	5.468070	chr12	92061775	92062118	LTR|ERVL-MaLR|THE1B	-	chr12	91988322	91993529	LINC01619|ENST00000551764.5	-	91988322,91989096,91990283,91993369	91988442,91989193,91990362,91993529	0.730539
GM12878	chr11	14325473	14325474	14325473	-	High_confidence	8	8	11	0.334865	2.732159	chr11	14325310	14325597	SINE|Alu|AluY	-	chr11	14277963	14325461	MSTRG.3717.2	-	14277963,14281601,14294470,14294759,14295767,14325164	14279424,14281720,14294579,14294862,14295855,14325461	1.000000
GM12878	chr6	26474335	26474346	26474345	+	RAMPAGE_only	90	145	318	9.680636	6.088377	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.556604
GM12878	chr20	53608832	53608833	53608832	-	High_confidence	7	7	11	0.334865	3.121928	chr20	53608733	53608922	SINE|MIR|MIR	+	chr20	53582541	53608892	ZNF217|ENST00000431687.5	-	53582541,53608353,53608831	53583168,53608444,53608892	0.545455
GM12878	chr6	148867684	148867692	148867684	+	RAMPAGE_only	5	5	9	0.273980	3.000000	chr6	148867480	148867818	LTR|ERVL-MaLR|THE1B	+	chr6	148747327	149076990	UST|ENST00000367463.4	+	148747327,148886985,148941278,148953871,148964409,149019138,149021323,149073832	148747677,148887029,148941434,148953951,148964563,149019236,149021481,149076990	0.888889
GM12878	chr9	20584609	20584610	20584609	-	RAMPAGE_only	55	55	59	1.796093	5.314709	chr9	20584443	20584805	LTR|ERVL-MaLR|THE1A	-	chr9	20346352	20600091	MSTRG.23759.6	-	20346352,20353524,20354807,20360741,20363475,20365668,20413720,20448122,20456703,20584527	20346574,20353596,20354879,20360841,20363605,20365744,20414425,20448266,20456786,20600091	0.610169
GM12878	chr16	12045370	12045371	12045370	+	RAMPAGE_only	4	4	6	0.182654	2.584963	chr16	12045406	12045506	SINE|MIR|MIRc	+	chr16	12038709	12051868	SNX29|ENST00000568359.1	+	12038709,12042896,12046383,12048371,12051846	12038787,12043077,12046454,12048620,12051868	0.500000
GM12878	chr19	17336685	17336727	17336685	+	High_confidence	11	11	39	1.187248	4.554124	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.871795
GM12878	chr2	200888597	200888629	200888628	-	High_confidence	55	74	148	4.505453	6.118615	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.851351
GM12878	chr22	23696415	23696465	23696435	+	High_confidence	10	13	51	1.552555	5.068692	chr22	23696381	23696442	SINE|MIR|MIRb	-	chr22	23696483	23699176	RGL4|ENST00000452208.1	+	23696483,23697170,23697837,23698211,23698843	23696688,23697245,23697861,23698333,23699176	0.960784
GM12878	chr4	173369526	173369555	173369533	-	High_confidence	5	5	16	0.487076	4.000000	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363779	173370446	AC097534.2|ENST00000609153.1	-	173363779,173369433,173370291	173364198,173369610,173370446	0.625000
GM12878	chr3	128675371	128675377	128675376	-	High_confidence	9	12	20	0.608845	3.576618	chr3	128675063	128675376	SINE|Alu|AluY	-	chr3	128619969	128675398	MSTRG.17579.1	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128674871	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128675398	0.850000
GM12878	chr7	69880268	69880310	69880290	+	RAMPAGE_only	6	6	23	0.700172	3.675311	chr7	69879973	69880357	LTR|ERVL-MaLR|MSTA	-	chr7	69824570	70290554	AUTS2|ENST00000643587.1	+	69824570,69825779,69899285,70118131,70134535,70290367	69824687,69825875,69899498,70118233,70134571,70290554	0.782609
GM12878	chr5	31530864	31530866	31530864	-	RAMPAGE_only	6	9	11	0.334865	2.550341	chr5	31530667	31530954	LINE|L2|L2c	+	chr5	31400496	31532061	DROSHA|ENST00000511367.6	-	31400496,31405676,31406852,31409055,31409249,31410745,31421271,31422786,31424426,31429474,31431575,31435764,31437238,31448546,31449280,31451532,31464235,31466181,31467938,31472062,31483553,31484880,31486490,31493206,31495285,31504554,31508620,31511034,31514987,31515453,31521122,31526078,31529039,31530797,31531989	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31422944,31424471,31429545,31431678,31435864,31437298,31448607,31449419,31451640,31464343,31466281,31468063,31472232,31483628,31484962,31486562,31493293,31495372,31504635,31508775,31511176,31515219,31515564,31521215,31526912,31529105,31530924,31532061	0.909091
GM12878	chr10	103181328	103181329	103181328	-	High_confidence	22	22	22	0.669730	3.936260	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103181685	MSTRG.3331.1	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857,103181184	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982,103181685	0.863636
GM12878	chr4	147779151	147779228	147779194	+	RAMPAGE_only	10	10	52	1.582997	5.015371	chr4	147779038	147779198	DNA|hAT-Charlie|MER5A	-	chr4	147732301	148072776	ARHGAP10|NM_024605.3	+	147732301,147822726,147822895,147847150,147857552,147864845,147866711,147875020,147879231,147881837,147906637,147909731,147913073,147939824,147946616,147955315,147965023,147966679,148023262,148046891,148063147,148064415,148071992	147732455,147822822,147822957,147847222,147857654,147864956,147866816,147875150,147879338,147881932,147906719,147909777,147913139,147939899,147946704,147955374,147965129,147966839,148023413,148047051,148063300,148064507,148072776	0.576923
GM12878	chr2	58033401	58033408	58033401	+	RAMPAGE_only	4	4	9	0.273980	2.641604	chr2	58033252	58033629	LTR|ERVL-MaLR|MLT1D	+	chr2	58046641	58159920	VRK2|NM_001130480.2	+	58046641,58048826,58084088,58084880,58086338,58088340,58089630,58123100,58131807,58135140,58139665,58146315,58159348	58046821,58048967,58084138,58084950,58086426,58088446,58089723,58123233,58131928,58135199,58139832,58146474,58159920	0.888889
GM12878	chr8	144103557	144103574	144103557	-	High_confidence	2	2	6	0.182654	2.584963	chr8	144103289	144103558	SINE|MIR|MIR	-	chr8	144102816	144103756	SHARPIN|ENST00000531375.1	-	144102816,144103552	144103225,144103756	0.833333
GM12878	chr9	39809803	39809879	39809858	-	High_confidence	22	26	89	2.709360	5.005306	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.910112
GM12878	chr8	134572781	134572782	134572781	-	RAMPAGE_only	7	7	10	0.304423	2.725481	chr8	134572592	134572743	DNA|TcMar-Mariner|MARNA	-	chr8	134478024	134565671	ZFAT|ENST00000518408.5	-	134478024,134509618,134512474,134520882,134532833,134565332	134478721,134509749,134512601,134521001,134532972,134565671	0.600000
GM12878	chr14	89462582	89462648	89462597	-	RAMPAGE_only	11	13	39	1.187248	3.839966	chr14	89462442	89462681	LTR|ERVL-MaLR|MSTC	-	chr14	89161384	89417112	FOXN3|ENST00000557258.5	-	89161384,89180700,89280949,89350671,89411933,89416870	89162969,89180806,89281014,89350808,89412490,89417112	0.948718
GM12878	chr1	174161424	174161465	174161450	+	RAMPAGE_only	11	11	47	1.430786	4.400311	chr1	174161256	174161539	SINE|Alu|AluSp	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.936170
GM12878	chr11	72111495	72111497	72111496	-	High_confidence	7	12	13	0.395749	3.418296	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.923077
GM12878	chr7	55538661	55538664	55538663	-	High_confidence	11	15	21	0.639287	3.010571	chr7	55538614	55538881	LINE|L1|L1ME4b	+	chr7	55471967	55538660	VOPP1|ENST00000625836.2	-	55471967,55492281,55497612,55521071,55538612	55473045,55492418,55497690,55521130,55538660	0.809524
GM12878	chr11	121590677	121590713	121590684	+	High_confidence	10	11	49	1.491670	4.195816	chr11	121590682	121590892	DNA|TcMar-Tigger|Tigger19a	+	chr11	121590418	121629684	SORL1|ENST00000527934.1	+	121590418,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121590897,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121629684	1.000000
GM12878	chr16	81811209	81811237	81811209	+	RAMPAGE_only	172	200	466	14.186089	5.981923	chr16	81811144	81811313	SINE|MIR|MIRb	+	chr16	81785989	81958020	PLCG2|ENST00000359376.7	+	81785989,81854443,81858262,81859115,81869213,81870851,81880909,81883268,81889171,81891471,81893708,81895806,81900611,81905402,81907684,81908415,81910519,81912596,81919483,81921197,81923484,81927081,81928557,81931496,81934428,81936168,81937757,81938800,81939891,81946174,81956694,81956848,81957955	81786182,81854587,81858356,81859163,81869298,81870935,81880953,81883341,81889273,81891590,81893794,81895927,81900780,81905507,81907774,81908591,81910720,81912716,81919664,81921269,81923594,81927178,81928624,81931654,81934531,81936378,81937903,81938915,81940059,81946263,81956847,81956879,81958020	0.892704
GM12878	chr22	21001556	21001621	21001600	-	High_confidence	2	2	17	0.517518	3.750000	chr22	21001557	21001648	SINE|MIR|MIR	-	chr22	21000271	21001518	THAP7|ENST00000488975.1	-	21000271,21000646,21001255	21000432,21000729,21001518	0.705882
GM12878	chr21	41864861	41864877	41864861	-	RAMPAGE_only	3	3	8	0.243538	2.807355	chr21	41864611	41864984	LINE|L2|L2a	+	chr21	41798224	41863302	PRDM15|NR_104260.1	-	41798224,41798582,41800183,41802711,41804533,41810153,41810752,41815704,41819581,41820094,41821066,41821902,41823317,41825959,41828165,41835436,41836112,41836467,41837933,41839622,41847089,41854565,41857175,41859591,41860326,41863234	41798496,41798743,41801722,41802921,41804614,41810329,41810836,41815836,41819701,41820174,41821230,41822037,41823449,41826054,41828333,41835524,41836207,41836649,41838063,41839853,41847191,41854818,41857329,41859685,41860372,41863302	0.500000
GM12878	chr17	28599735	28599736	28599735	+	High_confidence	4	5	7	0.213096	2.584963	chr17	28599569	28599766	SINE|MIR|MIR	-	chr17	28599132	28606910	SPAG5-AS1|ENST00000556050.1	+	28599132,28599697,28606295	28599246,28599839,28606910	0.571429
GM12878	chr1	25472473	25472495	25472473	+	RAMPAGE_only	3	3	10	0.304423	2.921928	chr1	25472204	25472529	LINE|L1|L1PA7	-	chr1	25430959	25499230	MACO1|ENST00000647928.1	+	25430959,25446761,25448807,25454258,25456652,25458390,25484126,25485612,25489172,25491409,25498263	25431178,25446903,25448934,25454382,25456831,25458892,25484274,25485795,25489293,25491584,25499230	1.000000
GM12878	chr18	4248960	4248991	4248990	-	High_confidence	27	32	51	1.552555	4.093105	chr18	4248689	4249312	LINE|L2|L2a	+	chr18	4005115	4248719	DLGAP1|ENST00000577430.1	-	4005115,4151179,4248568	4005201,4151287,4248719	0.745098
GM12878	chr16	30660884	30660908	30660884	+	High_confidence	3	4	12	0.365307	2.913977	chr16	30660701	30661093	LINE|L2|L2c	-	chr16	30661321	30664516	FBRS|ENST00000482749.1	+	30661321,30662419,30662558,30663041,30664214	30661333,30662468,30662859,30663102,30664516	0.916667
GM12878	chr1	245984516	245984550	245984527	-	RAMPAGE_only	8	9	38	1.156806	4.734512	chr1	245984505	245984685	DNA|hAT-Charlie|MER5A	-	chr1	245814341	245988538	SMYD3|ENST00000488153.5	-	245814341,245858495,245863798,245927930,245929869,245988393	245814415,245858670,245863886,245928033,245929937,245988538	0.578947
GM12878	chr17	77188360	77188362	77188361	+	RAMPAGE_only	7	14	14	0.426192	3.085055	chr17	77188073	77188993	LINE|L1|L1MD1	-	chr17	77185212	77214271	SEC14L1|ENST00000431431.6	+	77185212,77190802,77191180,77193420,77194676,77196201,77200483,77203569,77205275,77206228,77206727,77209341,77211949,77213313,77213917	77185383,77190952,77191312,77193549,77194911,77196311,77200673,77203658,77205346,77206400,77206862,77209476,77212201,77213492,77214271	0.714286
GM12878	chr20	15923313	15923314	15923313	-	High_confidence	8	8	8	0.243538	2.750000	chr20	15923155	15923507	LTR|ERVL-MaLR|THE1A	-	chr20	15892332	15923314	LOC613266|NR_130925.1	-	15892332,15923231	15894277,15923314	0.750000
GM12878	chr9	128682922	128682944	128682943	+	High_confidence	4	4	14	0.426192	2.931209	chr9	128682974	128683002	SINE|Alu|AluJb	+	chr9	128683423	128693998	MSTRG.24449.1	+	128683423,128683779,128691169,128691857,128692661,128692867,128693637,128693895	128683446,128684007,128691227,128692000,128692765,128692981,128693808,128693998	0.857143
GM12878	chr19	18544087	18544088	18544087	-	High_confidence	7	7	9	0.273980	3.000000	chr19	18544020	18544075	SINE|MIR|MIR3	-	chr19	18538215	18544077	FKBP8|ENST00000597611.7	-	18538215,18539370,18539550,18541678,18543908	18538436,18539459,18539720,18541995,18544077	0.888889
GM12878	chr1	26787570	26787592	26787578	+	High_confidence	3	3	10	0.304423	2.641604	chr1	26787533	26787616	LINE|L2|L2b	-	chr1	26787471	26798393	MSTRG.479.1	+	26787471,26790758,26794112,26797562	26787806,26790893,26795234,26798393	0.800000
GM12878	chr2	200887940	200887975	200887966	-	High_confidence	8	11	66	2.009189	5.476064	chr2	200887775	200888074	SINE|Alu|AluSx1	+	chr2	200871151	200887687	PPIL3|ENST00000415562.5	-	200871151,200876918,200881420,200882341,200885697,200887612	200871521,200877037,200881488,200882382,200885772,200887687	0.681818
GM12878	chr15	34588450	34588453	34588452	-	High_confidence	86	169	223	6.788622	4.629748	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.964126
GM12878	chr15	66401720	66401733	66401732	+	RAMPAGE_only	3	4	8	0.243538	2.521641	chr15	66401474	66401958	LINE|L2|L2c	-	chr15	66386872	66491544	MAP2K1|NM_002755.3	+	66386872,66435026,66436745,66443279,66444655,66481754,66484989,66487227,66489214,66489717,66490501	66387427,66435237,66436892,66443357,66444707,66481879,66485191,66487292,66489276,66489763,66491544	0.500000
GM12878	chr13	48492783	48492855	48492783	-	High_confidence	23	26	62	1.887420	5.207992	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.870968
GM12878	chrX	48540867	48540880	48540867	+	RAMPAGE_only	2	2	8	0.243538	2.521641	chrX	48540778	48540906	LINE|L2|L2c	-	chrX	48539797	48559284	TBC1D25|ENST00000418627.1	+	48539797,48541284,48544868,48558896,48559157	48539920,48541442,48545023,48559024,48559284	0.750000
GM12878	chr2	240022172	240022173	240022172	-	RAMPAGE_only	16	17	21	0.639287	2.694781	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.904762
GM12878	chr3	191235728	191235731	191235730	-	High_confidence	756	917	1139	34.673725	4.988554	chr3	191235058	191235997	LTR|ERV1|LTR78	-	chr3	191213290	191235724	MSTRG.18015.1	-	191213290,191217069,191218815,191228714,191229765,191234571,191235605	191213340,191217179,191218936,191228782,191229897,191234693,191235724	0.880597
GM12878	chr12	64883621	64883622	64883621	+	High_confidence	6	8	9	0.273980	2.947703	chr12	64883661	64883904	LTR|Gypsy?|LTR88b	+	chr12	64883773	64974611	LINC02389|ENST00000540024.1	+	64883773,64885193,64947315,64953652,64974570	64883865,64885300,64947462,64953822,64974611	0.777778
GM12878	chr3	106255589	106255590	106255589	-	High_confidence	4	4	7	0.213096	2.807355	chr3	106253080	106255986	LINE|L1|L1PA16	+	chr3	106246984	106256075	MSTRG.17407.1	-	106246984	106256075	0.857143
GM12878	chr1	183590841	183590926	183590910	-	High_confidence	22	26	107	3.257321	5.853068	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.953271
GM12878	chr11	47214673	47214674	47214673	+	High_confidence	14	20	20	0.608845	3.884184	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214569	47234653	DDB2|ENST00000614825.4	+	47214569,47215072,47216335,47216857,47232813,47234572	47214674,47215263,47216472,47217049,47232959,47234653	0.950000
GM12878	chr7	28434103	28434104	28434103	+	RAMPAGE_only	10	12	15	0.456634	3.182006	chr7	28434122	28434254	SINE|MIR|MIRb	+	chr7	28435614	28820000	CREB5|ENST00000396300.6	+	28435614,28488174,28494905,28507615,28570364,28718752,28724221,28804198,28809186,28818070,28819115	28435688,28488246,28494999,28507737,28570537,28718879,28724332,28804522,28809414,28818179,28820000	0.733333
GM12878	chr5	110753244	110753251	110753245	+	High_confidence	33	42	65	1.978746	4.772368	chr5	110752669	110753313	LINE|L2|L2b	-	chr5	110753301	110765161	SLC25A46|ENST00000513706.2	+	110753301,110756701,110761203	110755521,110756759,110765161	0.953846
GM12878	chr2	68364364	68364387	68364364	+	High_confidence	3	3	15	0.456634	3.664498	chr2	68364369	68364501	SINE|MIR|MIRb	+	chr2	68364056	68397453	MSTRG.13997.2	+	68364056,68364288,68380327,68380722,68382541,68386501,68388386,68393161,68394106,68395679	68364134,68365393,68380483,68380904,68382633,68386686,68388491,68393245,68394176,68397453	0.933333
GM12878	chr14	91241940	91242003	91241962	+	High_confidence	16	16	56	1.704766	4.729256	chr14	91241759	91242172	LINE|L2|L2a	-	chr14	91242758	91250835	AL135818.1|ENST00000553725.5	+	91242758,91244354,91250764	91243013,91244499,91250835	0.750000
GM12878	chr13	23808176	23808177	23808176	-	RAMPAGE_only	8	8	11	0.334865	3.095795	chr13	23808095	23808398	SINE|Alu|AluY	-	chr13	23730188	23889419	MIPEP|ENST00000382172.3	-	23730188,23756544,23760095,23805949,23809849,23836239,23837551,23839648,23841334,23858859,23862301,23864140,23869291,23870012,23874845,23879267,23881698,23886332,23889131	23730445,23756618,23760217,23806069,23809924,23836349,23837756,23839726,23841488,23858912,23862362,23864189,23869448,23870195,23874909,23879354,23881787,23886506,23889419	0.545455
GM12878	chr2	62150617	62150640	62150617	-	High_confidence	7	7	12	0.365307	3.251629	chr2	62150566	62150836	LTR|ERV1|MER57E1	+	chr2	62150393	62150639	MSTRG.13939.1	-	62150393	62150639	0.666667
GM12878	chr3	183163619	183163621	183163620	-	High_confidence	27	37	40	1.217690	4.362815	chr3	183163266	183163587	SINE|Alu|AluSc5	-	chr3	183153900	183163839	LAMP3|ENST00000476015.1	-	183153900,183162606,183163619	183154391,183162730,183163839	1.000000
GM12878	chr8	2726946	2726963	2726962	+	High_confidence	22	22	61	1.856977	5.362207	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.606557
GM12878	chr12	10553229	10553230	10553229	+	High_confidence	7	9	9	0.273980	2.725481	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.888889
GM12878	chr6	11728392	11728404	11728398	-	High_confidence	6	11	37	1.126363	4.514718	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.702703
GM12878	chr9	64870568	64870581	64870580	-	High_confidence	6	7	13	0.395749	2.522055	chr9	64870414	64870933	LTR|ERV1|LTR10A	-	chr9	64785596	64870619	MSTRG.23992.2	-	64785596,64843234	64790021,64870619	0.769231
GM12878	chr17	10034210	10034224	10034223	-	RAMPAGE_only	15	15	28	0.852383	4.310443	chr17	10034133	10034278	SINE|MIR|MIR3	+	chr17	9943120	10036537	GAS7|ENST00000584146.6	-	9943120,9946893,9959201,9969676,9981803,10019776,10027019,10036433	9943236,9946983,9959255,9969762,9981884,10019897,10027099,10036537	0.750000
GM12878	chr21	29077448	29077487	29077486	+	High_confidence	7	7	18	0.547961	3.292770	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.833333
GM12878	chr2	47695707	47695736	47695720	+	High_confidence	16	16	37	1.126363	3.886885	chr2	47695601	47695914	SINE|Alu|AluY	-	chr2	47695815	47757793	MSH6|ENST00000454137.5	+	47695815,47708208,47737390,47757688	47696097,47708430,47737506,47757793	0.891892
GM12878	chr8	22246146	22246158	22246146	+	High_confidence	30	39	65	1.978746	5.357107	chr8	22246118	22246429	SINE|Alu|AluSq2	-	chr8	22245234	22254600	POLR3D|ENST00000397802.8	+	22245234,22247220,22247856,22248153,22248480,22249043,22250074,22250395	22245614,22247264,22248008,22248278,22248649,22249309,22250227,22254600	0.753846
GM12878	chr1	181132277	181132278	181132277	+	RAMPAGE_only	5	5	8	0.243538	2.500000	chr1	181132212	181132375	SINE|Alu|AluSx1	-	chr1	181174483	181182208	LINC01732|ENST00000435023.1	+	181174483,181175336,181181888	181174575,181175466,181182208	0.500000
GM12878	chr4	184353872	184353960	184353936	-	High_confidence	200	206	1411	42.954017	6.983522	chr4	184353593	184354081	LTR|ERVL-MaLR|MLT1G	+	chr4	184340755	184353977	LINC02363|ENST00000317596.3	-	184340755,184350088,184353312	184342053,184350278,184353977	0.979447
GM12878	chr8	2715715	2715716	2715715	-	RAMPAGE_only	4	6	7	0.213096	2.584963	chr8	2715545	2715907	LTR|ERVL-MaLR|THE1B	-	chr8	2696553	2728417	AC246817.2|ENST00000520842.5	-	2696553,2705214,2728329	2696970,2705286,2728417	0.857143
GM12878	chr2	87469947	87469950	87469949	+	High_confidence	13	22	25	0.761056	3.803509	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87469949	87521413	CYTOR|ENST00000437561.1	+	87469949,87470149,87521206	87470042,87470304,87521413	0.680000
GM12878	chr9	121513401	121513402	121513401	-	RAMPAGE_only	7	7	8	0.243538	2.807355	chr9	121513235	121513598	LTR|ERVL-MaLR|THE1A	-	chr9	121455039	121500027	GGTA1P|ENST00000481799.5	-	121455039,121460103,121461251,121463292,121467842,121499649	121455841,121460219,121461317,121463328,121467931,121500027	0.500000
GM12878	chr2	9422966	9422979	9422966	-	High_confidence	3	3	9	0.273980	2.500000	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9406660	9423087	MSTRG.13556.8	-	9406660,9408112,9412268,9418625,9419989,9422478	9406905,9408205,9412405,9418732,9420100,9423087	0.555556
GM12878	chr3	15341450	15341451	15341450	-	High_confidence	10	10	12	0.365307	3.095795	chr3	15341407	15341757	LTR|ERVL-MaLR|THE1D	+	chr3	15254352	15341394	SH3BP5|NM_001018009.3	-	15254352,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341394	0.750000
GM12878	chr14	91242026	91242036	91242026	-	RAMPAGE_only	3	4	8	0.243538	2.750000	chr14	91241759	91242172	LINE|L2|L2a	-	chr14	91232531	91244508	GPR68|NM_001177676.1	-	91232531,91244296	91235179,91244508	0.500000
GM12878	chrX	136776310	136776321	136776310	-	RAMPAGE_only	5	5	14	0.426192	3.467720	chrX	136775104	136776864	LINE|L1|L1PB1	+	chrX	136665549	136781344	ARHGEF6|NM_004840.2	-	136665549,136669481,136672019,136675006,136676623,136677935,136679534,136680730,136681889,136682757,136685676,136687931,136690609,136706907,136708674,136713275,136732101,136743584,136745222,136747507,136779413,136780717	136668169,136669536,136672119,136675096,136676717,136677956,136679660,136680876,136681968,136682844,136685823,136687991,136690748,136707030,136708770,136713370,136732172,136743786,136745347,136747592,136779497,136781344	1.000000
GM12878	chr2	230943744	230943794	230943792	+	High_confidence	179	212	426	12.968399	6.476771	chr2	230943583	230943999	LTR|ERVL-MaLR|MSTA	+	chr2	230943721	230958912	MSTRG.15084.2	+	230943721,230951951,230956937	230944971,230952072,230958912	0.988263
GM12878	chr14	22534398	22534405	22534398	+	RAMPAGE_only	5	5	10	0.304423	2.725481	chr14	22534337	22534566	SINE|MIR|MIRb	-	chr14	22547505	22552154	TRAC|ENST00000611116.1	+	22547505,22549637,22550556,22551604	22547778,22549682,22550664,22552154	0.900000
GM12878	chr9	62897430	62897434	62897430	+	High_confidence	40	40	70	2.130958	5.305857	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.928571
GM12878	chr16	50681705	50681711	50681710	-	High_confidence	4	4	9	0.273980	2.503258	chr16	50681558	50681697	SINE|MIR|MIRc	-	chr16	50666299	50681353	SNX20|ENST00000300590.7	-	50666299,50675769,50677396,50681189	50669148,50675921,50677535,50681353	0.888889
GM12878	chr19	43748773	43748827	43748806	-	RAMPAGE_only	12	12	55	1.674324	5.032076	chr19	43748690	43748880	SINE|MIR|MIRc	+	chr19	43747654	43754598	SMG9|ENST00000597586.5	-	43747654,43747977,43750591,43754375	43747897,43748052,43750747,43754598	0.836364
GM12878	chr5	38721102	38721103	38721102	-	High_confidence	5	5	8	0.243538	2.521641	chr5	38720913	38721298	LTR|ERVL-MaLR|MSTA	-	chr5	38710366	38720273	OSMR-AS1|ENST00000506463.1	-	38710366,38711348,38715639,38716464,38720184	38710776,38711420,38715802,38716530,38720273	0.625000
GM12878	chr11	77438226	77438229	77438226	-	RAMPAGE_only	15	20	33	1.004594	4.801970	chr11	77438137	77438440	LTR|ERVL-MaLR|MSTA	-	chr11	77322016	77412064	PAK1|ENST00000530617.5	-	77322016,77332729,77336085,77337323,77340645,77343818,77349238,77353535,77355667,77358897,77374327,77379240,77379893,77392330,77411773	77323154,77332867,77336282,77337423,77340763,77343931,77349287,77353599,77355842,77359017,77374365,77379388,77379994,77392541,77412064	0.939394
GM12878	chr14	20666788	20666789	20666788	-	High_confidence	238	264	305	9.284887	6.293983	chr14	20666632	20666979	LTR|ERVL-MaLR|THE1A	-	chr14	20650160	20666778	MSTRG.6735.2	-	20650160,20664127	20660423,20666778	0.868852
GM12878	chr19	5680234	5680261	5680260	-	High_confidence	5	5	16	0.487076	3.456565	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.875000
GM12878	chr5	54390840	54390882	54390840	+	RAMPAGE_only	29	35	136	4.140146	6.331414	chr5	54390655	54391005	LTR|ERVL-MaLR|THE1B	+	chr5	54395350	54415099	LINC01033|ENST00000504609.3	+	54395350,54396996,54400436,54401642,54408454,54415021	54395417,54397134,54400598,54401865,54408521,54415099	0.742647
GM12878	chr7	28491144	28491161	28491160	+	High_confidence	5	5	10	0.304423	2.646439	chr7	28490945	28491190	LINE|L2|L2b	-	chr7	28491129	28819637	CREB5|ENST00000409603.5	+	28491129,28494905,28507615,28570364,28718752,28724221,28804198,28809186,28818070,28819115	28491263,28494999,28507737,28570537,28718879,28724332,28804522,28809414,28818179,28819637	0.600000
GM12878	chr19	35331749	35331786	35331765	+	High_confidence	15	15	61	1.856977	5.246884	chr19	35331566	35331862	SINE|Alu|AluSx	+	chr19	35332015	35346766	CD22|ENST00000594250.5	+	35332015,35332546,35336035,35340880,35341342,35341701,35344828,35345050,35345601,35346150,35346565	35332074,35332924,35336341,35341138,35341606,35341965,35344925,35345126,35345720,35346235,35346766	0.573770
GM12878	chr17	35432475	35432534	35432499	-	High_confidence	10	11	54	1.643882	4.652080	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.944444
GM12878	chr12	116194896	116194919	116194896	-	RAMPAGE_only	2	2	7	0.213096	2.807355	chr12	116194766	116195322	LINE|L1|L1MEi	+	chr12	116009007	116237687	MED13L|ENST00000647567.1	-	116009007,116012796,116015108,116019223,116019777,116022455,116096668,116111427,116237467	116009132,116012898,116015274,116019412,116019972,116022601,116096752,116111512,116237687	0.714286
GM12878	chr16	81811100	81811101	81811100	+	RAMPAGE_only	6	7	8	0.243538	2.750000	chr16	81811144	81811313	SINE|MIR|MIRb	+	chr16	81785989	81958020	PLCG2|ENST00000359376.7	+	81785989,81854443,81858262,81859115,81869213,81870851,81880909,81883268,81889171,81891471,81893708,81895806,81900611,81905402,81907684,81908415,81910519,81912596,81919483,81921197,81923484,81927081,81928557,81931496,81934428,81936168,81937757,81938800,81939891,81946174,81956694,81956848,81957955	81786182,81854587,81858356,81859163,81869298,81870935,81880953,81883341,81889273,81891590,81893794,81895927,81900780,81905507,81907774,81908591,81910720,81912716,81919664,81921269,81923594,81927178,81928624,81931654,81934531,81936378,81937903,81938915,81940059,81946263,81956847,81956879,81958020	0.875000
GM12878	chr8	2728416	2728452	2728418	-	High_confidence	89	204	306	9.315329	4.948782	chr8	2728201	2728557	LTR|ERV1|LTR12C	+	chr8	2696553	2728417	AC246817.2|ENST00000520842.5	-	2696553,2705214,2728329	2696970,2705286,2728417	0.807190
GM12878	chr21	31635224	31635228	31635224	+	RAMPAGE_only	5	6	9	0.273980	2.750000	chr21	31635162	31635523	LTR|ERVL-MaLR|MLT1A1	+	chr21	31659621	31668931	SOD1|ENST00000270142.10	+	31659621,31663789,31666448,31667257,31668470	31659841,31663886,31666518,31667375,31668931	0.666667
GM12878	chr3	98733165	98733231	98733230	+	High_confidence	14	15	102	3.105110	5.101072	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.803922
GM12878	chr12	9674472	9674491	9674472	+	High_confidence	2	2	8	0.243538	2.807355	chr12	9672445	9674544	LINE|L1|L1PA10	-	chr12	9674007	9693336	CLEC2D|ENST00000476198.2	+	9674007,9680922,9687901,9692827,9693033	9674210,9681033,9688161,9692931,9693336	0.500000
GM12878	chr13	106561950	106561951	106561950	-	High_confidence	35	37	39	1.187248	4.702565	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.948718
GM12878	chr1	248663615	248663621	248663615	-	RAMPAGE_only	4	5	13	0.395749	3.251629	chr1	248663477	248663858	LTR|ERVL-MaLR|MSTA	-	chr1	248573800	248574757	OR2T34|NM_001001821.1	-	248573800	248574757	0.692308
GM12878	chr1	35538533	35538539	35538538	-	RAMPAGE_only	11	11	26	0.791499	3.973661	chr1	35538308	35538616	SINE|Alu|AluSx	+	chr1	35451634	35554987	KIAA0319L|ENST00000440579.5	-	35451634,35453556,35454361,35456012,35460304,35462620,35466607,35470862,35474804,35478965,35506611,35554349,35554899	35451776,35453689,35454485,35456241,35460437,35462713,35466695,35470960,35474906,35479212,35507135,35554519,35554987	0.615385
GM12878	chr8	65979196	65979197	65979196	+	RAMPAGE_only	17	17	19	0.578403	3.932138	chr8	65979005	65979377	LTR|ERVL-MaLR|THE1B	+	chr8	66021555	66100520	DNAJC5B|NM_033105.4	+	66021555,66043487,66051530,66076659,66080376,66099936	66021705,66043611,66051666,66076873,66080548,66100520	0.736842
GM12878	chr11	65382641	65382663	65382645	-	High_confidence	44	44	119	3.622628	5.931547	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	1.000000
GM12878	chr9	122912974	122913017	122913016	-	High_confidence	7	7	21	0.639287	4.070656	chr9	122912996	122913067	LINE|L2|L2b	+	chr9	122908055	122913328	ZBTB6|NM_006626.5	-	122908055,122913250	122912081,122913328	0.571429
GM12878	chr14	77373846	77373929	77373850	-	RAMPAGE_only	5	5	32	0.974152	3.522368	chr14	77373691	77374095	LTR|ERVL-MaLR|MSTB	+	chr14	77341770	77377053	TMED8|NM_213601.1	-	77341770,77343177,77343696,77346348,77351672,77376935	77341988,77343483,77343823,77346478,77351751,77377053	0.937500
GM12878	chr8	80134667	80134682	80134667	-	RAMPAGE_only	4	4	16	0.487076	3.189898	chr8	80134642	80134938	LTR|ERVL-MaLR|MLT1F	+	chr8	80064474	80158887	TPD52|ENST00000521561.1	-	80064474,80158436	80064593,80158887	0.875000
GM12878	chr8	66014984	66015017	66014992	+	RAMPAGE_only	10	12	36	1.095921	4.536286	chr8	66014884	66015337	LTR|ERVL|LTR101_Mam	+	chr8	66021555	66100520	DNAJC5B|NM_033105.4	+	66021555,66043487,66051530,66076659,66080376,66099936	66021705,66043611,66051666,66076873,66080548,66100520	0.777778
GM12878	chr2	38029944	38029945	38029944	-	RAMPAGE_only	6	7	9	0.273980	2.750000	chr2	38029770	38030139	LTR|ERVL-MaLR|THE1B	-	chr2	38029345	38036267	RMDN2-AS1|ENST00000631208.2	-	38029345,38036149	38029920,38036267	0.666667
GM12878	chr1	111128023	111128033	111128023	-	High_confidence	45	46	95	2.892014	5.569922	chr1	111127946	111128007	DNA|hAT-Charlie|Charlie7a	-	chr1	111118123	111128027	DRAM2|ENST00000461449.5	-	111118123,111118804,111119876,111120515,111126226,111127982	111118267,111118897,111119959,111120693,111126294,111128027	0.736842
GM12878	chr5	177431696	177431711	177431710	+	High_confidence	11	13	27	0.821941	4.060262	chr5	177431745	177431876	SINE|MIR|MIRb	+	chr5	177431710	177442064	GRK6|ENST00000515666.5	+	177431710,177432232,177432705,177433146,177433346,177433535,177433913,177434901,177435031,177436072,177436392,177440699,177440918,177441736	177432107,177432310,177432806,177433239,177433410,177433676,177434104,177434939,177435121,177436281,177436530,177440837,177441053,177442064	0.888889
GM12878	chr22	35648261	35648276	35648275	+	High_confidence	17	17	37	1.126363	4.345287	chr22	35648269	35648319	SINE|MIR|MIR3	-	chr22	35648376	35668409	APOL6|NM_030641.3	+	35648376,35656378,35658614	35648623,35656475,35668409	0.972973
GM12878	chr12	10553498	10553499	10553498	+	High_confidence	5	5	8	0.243538	2.521641	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.750000
GM12878	chr19	47227142	47227221	47227183	-	High_confidence	15	18	146	4.444569	5.963920	chr19	47227045	47227213	SINE|MIR|MIR1_Amn	-	chr19	47221644	47227189	BBC3|ENST00000598636.1	-	47221644,47226563	47221918,47227189	0.986301
GM12878	chr1	160263366	160263398	160263372	-	High_confidence	9	9	23	0.700172	3.882045	chr1	160263341	160263646	SINE|Alu|AluSz	+	chr1	160215714	160262560	DCAF8|NM_015726.3	-	160215714,160218323,160218848,160222650,160224441,160225061,160225590,160231296,160237134,160238606,160239696,160243959,160261284,160262448	160217708,160218440,160218968,160222781,160224549,160225119,160225663,160231407,160237229,160238747,160240370,160244034,160261358,160262560	1.000000
GM12878	chr1	51505088	51505119	51505088	-	RAMPAGE_only	12	12	65	1.978746	5.133530	chr1	51504839	51505132	SINE|Alu|AluSz6	+	chr1	51354262	51519241	EPS15|ENST00000371730.6	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51409534,51421785,51440346,51444888,51446959,51448045,51461090,51463672,51465260,51468472,51471689,51472858,51481272,51519198	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51409696,51421858,51440432,51445045,51447105,51448135,51461150,51463798,51465326,51468568,51471737,51472948,51481314,51519241	0.876923
GM12878	chr9	128380897	128380898	128380897	+	RAMPAGE_only	11	11	11	0.334865	3.277613	chr9	128380812	128381123	SINE|Alu|AluY	-	chr9	128683423	128693998	MSTRG.24449.1	+	128683423,128683779,128691169,128691857,128692661,128692867,128693637,128693895	128683446,128684007,128691227,128692000,128692765,128692981,128693808,128693998	1.000000
GM12878	chr3	187031639	187031687	187031643	+	RAMPAGE_only	11	11	58	1.765651	4.847133	chr3	187031440	187031734	SINE|Alu|AluSz	-	chr3	187025482	187042977	ST6GAL1|ENST00000446170.1	+	187025482,187038394,187038741,187042653	187025517,187038491,187038873,187042977	0.517241
GM12878	chr15	75626304	75626305	75626304	-	High_confidence	15	15	17	0.517518	3.616875	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.882353
GM12878	chr8	80134728	80134738	80134737	-	RAMPAGE_only	7	10	18	0.547961	3.413834	chr8	80134642	80134938	LTR|ERVL-MaLR|MLT1F	+	chr8	80064474	80158887	TPD52|ENST00000521561.1	-	80064474,80158436	80064593,80158887	0.833333
GM12878	chr14	101991403	101991404	101991403	+	RAMPAGE_only	4	4	7	0.213096	2.521641	chr14	101991196	101991472	SINE|Alu|AluSq2	+	chr14	101964572	102011733	DYNC1H1|ENST00000643684.1	+	101964572,101975711,101979318,101979718,101980363,101983018,101983381,101985686,101987452,101988702,101991526,101994183,101994672,101994985,101995180,101997034,101999988,102000285,102000953,102001144,102001534,102002536,102002791,102004517,102005041,102005887,102007007,102008177,102009842,102010275,102010739	101964947,101975799,101979492,101979974,101980550,101983290,101983609,101986763,101987632,101988852,101991673,101994324,101994849,101995096,101995300,101997274,102000144,102000399,102001064,102001354,102001681,102002703,102002965,102004950,102005236,102006170,102007108,102008337,102010086,102010459,102011733	1.000000
GM12878	chr3	14426194	14426249	14426212	+	RAMPAGE_only	8	9	32	0.974152	4.202820	chr3	14426229	14426378	SINE|MIR|MIRc	+	chr3	14432669	14445816	SLC6A6|ENST00000452775.1	+	14432669,14443623,14445716	14432787,14443863,14445816	0.750000
GM12878	chr3	121979515	121979531	121979530	+	RAMPAGE_only	3	3	11	0.334865	3.277613	chr3	121979401	121979753	LTR|ERVL-MaLR|THE1B	+	chr3	122055361	122121143	CD86|NM_001206925.1	+	122055361,122103511,122106197,122109264,122118047,122119437	122055503,122103847,122106500,122109408,122118093,122121143	0.545455
GM12878	chr6	22302817	22302837	22302834	-	High_confidence	432	440	820	24.962647	5.863510	chr6	22302483	22302981	LTR|ERV1|MER39	-	chr6	22287243	22302853	PRL|NM_001163558.2	-	22287243,22290173,22292537,22294408,22296954,22302759	22287593,22290353,22292645,22294584,22297079,22302853	0.937805
GM12878	chr6	130260369	130260500	130260499	+	High_confidence	317	320	549	16.712796	7.083122	chr6	130260122	130260610	LTR|ERV1|LTR2B	+	chr6	130260416	130443061	MSTRG.21264.1	+	130260416,130440406	130260875,130443061	0.610200
GM12878	chr6	15387380	15387384	15387380	+	RAMPAGE_only	2	3	6	0.182654	2.584963	chr6	15387299	15387453	LTR|ERVL-MaLR|MLT1B	-	chr6	15248854	15522042	JARID2|NM_001267040.1	+	15248854,15374116,15410223,15452005,15468541,15487306,15496131,15500906,15504499,15507135,15507345,15508339,15511295,15512207,15512914,15513238,15517160,15520068	15248964,15374252,15410365,15452175,15468718,15487542,15497170,15501409,15504592,15507254,15507416,15508454,15511401,15512390,15513045,15513422,15517268,15522042	0.500000
GM12878	chr13	19239752	19239753	19239752	-	RAMPAGE_only	4	4	7	0.213096	2.584963	chr13	19239586	19239800	LTR|ERVL-MaLR|MLT1F	-	chr13	19201636	19227432	PSPC1P1|ENST00000442352.1	-	19201636,19204339,19208482,19219709,19227247	19201822,19204509,19208540,19219775,19227432	0.714286
GM12878	chr9	33989267	33989270	33989269	-	High_confidence	8	14	20	0.608845	3.003702	chr9	33989199	33989499	SINE|Alu|AluY	-	chr9	33948373	33989043	UBAP2|ENST00000421278.2	-	33948373,33953284,33956078,33960825,33971650,33973182,33986759,33988972	33948587,33953474,33956146,33960878,33971754,33973237,33986837,33989043	0.950000
GM12878	chr16	13337350	13337355	13337350	+	RAMPAGE_only	24	24	45	1.369901	5.036616	chr16	13337160	13337521	LTR|ERVL-MaLR|THE1B	+	chr16	13246315	13562918	U91319.1|ENST00000571619.5	+	13246315,13258332,13350179,13474209,13562706	13246390,13258435,13350421,13474341,13562918	0.577778
GM12878	chr19	7702329	7702363	7702339	-	High_confidence	4	4	13	0.395749	3.022055	chr19	7702149	7702358	SINE|MIR|MIR	-	chr19	7688756	7702146	FCER2|NM_002002.4	-	7688756,7690158,7690405,7696824,7697012,7697235,7697526,7698355,7698740,7699738,7702018	7689430,7690265,7690557,7696914,7697075,7697298,7697589,7698409,7698854,7699845,7702146	0.846154
GM12878	chr1	1407822	1407832	1407822	-	High_confidence	5	5	15	0.456634	3.521641	chr1	1407717	1407798	SINE|Alu|AluYh9	-	chr1	1401895	1407313	MRPL20|NM_017971.3	-	1401895,1405808,1406908,1407130	1402256,1405886,1407019,1407313	0.866667
GM12878	chr21	25421866	25421867	25421866	-	RAMPAGE_only	11	12	17	0.517518	4.000000	chr21	25421734	25421882	LINE|L2|L2b	-	chr21	25385819	25431701	LINC00158|NR_024027.2	-	25385819,25420707,25424553,25429765,25431177	25386338,25420800,25424649,25430009,25431701	0.529412
GM12878	chr6	36887645	36887654	36887653	+	RAMPAGE_only	8	8	24	0.730614	2.844032	chr6	36887572	36887732	LINE|L2|L2c	-	chr6	36885863	36928964	C6orf89|NM_152734.3	+	36885863,36899425,36902220,36914283,36914553,36916444,36919577,36923346	36886028,36899633,36902434,36914435,36914693,36916574,36919701,36928964	0.958333
GM12878	chr5	89350973	89350977	89350976	+	RAMPAGE_only	22	26	45	1.369901	4.860238	chr5	89350977	89351163	SINE|MIR|MIR	+	chr5	89418806	89466398	MEF2C-AS1|ENST00000508742.1	+	89418806,89465665,89465915	89418892,89465775,89466398	0.577778
GM12878	chr1	30758030	30758075	30758074	-	High_confidence	12	12	37	1.126363	4.384795	chr1	30758001	30758215	SINE|MIR|MIRb	-	chr1	30732467	30757836	LAPTM5|NM_006762.2	-	30732467,30735172,30737603,30738939,30739808,30741639,30742455,30757658	30733917,30735265,30737699,30739062,30739937,30741716,30742549,30757836	0.945946
GM12878	chr20	47412647	47412689	47412677	-	High_confidence	23	32	89	2.709360	5.408036	chr20	47412418	47412713	SINE|Alu|AluSz	+	chr20	47382549	47412691	MSTRG.15570.1	-	47382549,47397148,47412069	47385019,47397345,47412691	0.921348
GM12878	chr19	55257722	55257725	55257724	-	High_confidence	12	15	21	0.639287	4.106603	chr19	55257534	55257831	LINE|L2|L2c	+	chr19	55230489	55257301	MSTRG.13417.7	-	55230489,55230612,55230773,55231409,55231597,55231801,55232074,55236642,55236912,55239404,55239593,55239825,55239998,55240235,55240944,55241238,55241476,55242165,55242375,55245119,55245264,55245491,55246876,55255674	55230531,55230684,55230884,55231491,55231668,55231982,55232211,55236821,55236970,55239502,55239683,55239911,55240114,55240300,55241079,55241391,55241639,55242279,55242488,55245185,55245402,55245678,55247109,55257301	1.000000
GM12878	chr11	117185950	117185963	117185950	+	High_confidence	2	2	6	0.182654	2.584963	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.833333
GM12878	chr19	35902404	35902405	35902404	-	RAMPAGE_only	10	10	13	0.395749	2.653544	chr19	35901853	35902464	LINE|L2|L2b	+	chr19	35901560	35903855	AD000864.1|ENST00000624076.1	-	35901560	35903855	0.923077
GM12878	chr4	55991661	55991679	55991661	+	RAMPAGE_only	2	2	8	0.243538	2.521641	chr4	55991546	55991703	LINE|L1|HAL1ME	-	chr4	55964865	56033104	CEP135|ENST00000506202.1	+	55964865,55969062,55971269,55974745,55980142,55981226,55985280,55991933,55999301,55999490,56008326,56009734,56011411,56011799,56017647,56019352,56020675,56024500,56031359	55965859,55969128,55971408,55974969,55980295,55981379,55985358,55992085,55999417,55999645,56008382,56009903,56011522,56011985,56017857,56019555,56020780,56024614,56033104	0.875000
GM12878	chr8	23243634	23243635	23243634	+	High_confidence	20	20	20	0.608845	3.884184	chr8	23243551	23243732	LTR|ERV1|LTR21A	+	chr8	23243636	23262000	CHMP7|NM_152272.4	+	23243636,23246255,23249209,23255246,23256459,23258032,23258329,23258731,23259065,23260143,23260537	23243844,23246994,23249381,23255432,23256593,23258081,23258449,23258830,23259126,23260323,23262000	0.950000
GM12878	chr6	13472062	13472063	13472062	-	High_confidence	19	19	21	0.639287	2.879506	chr6	13471904	13472258	LTR|ERVL-MaLR|THE1A	-	chr6	13469267	13472063	GFOD1|NR_038459.1	-	13469267,13471980	13470630,13472063	0.761905
GM12878	chr19	48270994	48271016	48271015	+	High_confidence	6	6	10	0.304423	2.947703	chr19	48270796	48271084	SINE|Alu|AluYc	+	chr19	48271055	48287070	ZNF114|ENST00000600687.5	+	48271055,48271286,48279730,48282370,48285760	48271119,48271449,48279808,48282497,48287070	0.800000
GM12878	chr3	128675143	128675153	128675152	-	High_confidence	100	106	260	7.914986	5.483213	chr3	128675063	128675376	SINE|Alu|AluY	-	chr3	128619969	128675398	MSTRG.17579.1	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128674871	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128675398	0.826923
GM12878	chr5	124725141	124725153	124725141	-	RAMPAGE_only	4	4	13	0.395749	3.418296	chr5	124724874	124725417	LINE|L2|L2a	+	chr5	124643510	124744367	ZNF608|ENST00000503896.6	-	124643510,124649609,124701013,124744083	124643683,124649697,124701269,124744367	0.692308
GM12878	chr19	10180195	10180212	10180195	-	RAMPAGE_only	3	3	11	0.334865	2.921928	chr19	10180031	10180331	SINE|Alu|AluSz	+	chr19	10133345	10194934	DNMT1|ENST00000592705.5	-	10133345,10134216,10135735,10136120,10137084,10137831,10138438,10139675,10140045,10140780,10141104,10142027,10143765,10146350,10148883,10149452,10149852,10151397,10151749,10154292,10154585,10154904,10155852,10156390,10159657,10159841,10160017,10160383,10162666,10163325,10166597,10168329,10173089,10173870,10175539,10177291,10180186,10180349,10180777,10182040,10194819	10133701,10134307,10135852,10136287,10137280,10138009,10138605,10139817,10140328,10140909,10141189,10142220,10143987,10146524,10149017,10149657,10149968,10151545,10151847,10154479,10154773,10155056,10155945,10156509,10159767,10159922,10160063,10160418,10162748,10163360,10166685,10168364,10173174,10173905,10175618,10177367,10180234,10180529,10180885,10182077,10194934	0.636364
GM12878	chr20	36845136	36845186	36845166	-	RAMPAGE_only	3	3	15	0.456634	3.378783	chr20	36845090	36845208	DNA|hAT-Charlie|MER5A	+	chr20	36828596	36839402	SOGA1|ENST00000463491.1	-	36828596,36839216	36829212,36839402	0.733333
GM12878	chr11	119259261	119259277	119259276	+	RAMPAGE_only	4	4	8	0.243538	2.750000	chr11	119258621	119259301	LINE|L1|L1PB3	-	chr11	119206423	119313926	CBL|ENST00000637974.1	+	119206423,119232447,119271734,119273867,119274831,119275996,119277756,119278165,119278509,119284968,119285188,119287851,119296917,119297383,119298357,119299494,119313417	119206612,119232695,119271881,119274024,119274953,119276134,119277844,119278297,119278713,119285100,119285566,119287946,119297034,119297481,119298540,119299587,119313926	1.000000
GM12878	chr11	123061189	123061316	123061212	-	High_confidence	9	10	82	2.496265	5.363845	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.951220
GM12878	chr3	44439839	44439861	44439852	-	High_confidence	2	4	15	0.456634	3.807355	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421126	44439917	C3orf86|ENST00000636468.1	-	44421126,44439796	44421813,44439917	0.733333
GM12878	chr1	89272850	89272883	89272867	-	High_confidence	4	4	23	0.700172	4.229871	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	1.000000
GM12878	chr8	95078638	95078639	95078638	-	RAMPAGE_only	11	11	11	0.334865	3.277613	chr8	95078361	95078663	SINE|Alu|AluJo	+	chr8	95066807	95073182	LOC105375650|NR_132986.1	-	95066807,95072928	95069235,95073182	1.000000
GM12878	chr22	40435844	40435878	40435877	-	High_confidence	10	10	18	0.547961	3.734522	chr22	40435650	40435954	SINE|Alu|AluY	+	chr22	40410281	40436310	MRTFA|ENST00000614754.4	-	40410281,40416975,40417340,40418373,40420404,40420846,40423535,40424205,40429605,40431404,40435498,40436300	40411907,40417046,40417493,40419384,40420576,40421100,40423685,40424381,40429767,40431480,40435554,40436310	0.555556
GM12878	chr2	29114134	29114164	29114163	+	High_confidence	3	3	9	0.273980	2.750000	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.888889
GM12878	chr1	8764679	8764693	8764692	-	RAMPAGE_only	25	35	60	1.826535	5.299972	chr1	8764568	8764658	LINE|L2|L2b	-	chr1	8464969	8753838	RERE|ENST00000480342.5	-	8464969,8495062,8497404,8508626,8541213,8556474,8557417,8614560,8624309,8655972,8753430	8466023,8495162,8497529,8508675,8541318,8556571,8557523,8614686,8624380,8656441,8753838	0.933333
GM12878	chr21	25421521	25421562	25421544	-	RAMPAGE_only	11	11	33	1.004594	4.478232	chr21	25421048	25421524	LTR|ERVL|LTR16E1	-	chr21	25385819	25431701	LINC00158|NR_024027.2	-	25385819,25420707,25424553,25429765,25431177	25386338,25420800,25424649,25430009,25431701	0.606061
GM12878	chr6	159990417	159990418	159990417	+	RAMPAGE_only	12	12	15	0.456634	3.664498	chr6	159990227	159990588	LTR|ERVL-MaLR|THE1C	+	chr6	159969105	160106551	IGF2R|ENST00000647592.1	+	159969105,159991183,160009009,160010686,160024571,160027184,160029549,160032550,160032941,160034418,160040559,160043147,160044513,160045744,160046497,160047158,160047791,160048374,160050472,160056423,160058022,160058905,160060546,160061502,160061752,160062531,160063414,160064400,160064803,160068248,160069867,160071909,160072764,160073212,160073756,160075846,160078200,160079579,160080128,160083949,160084994,160088032,160089106,160089915,160096438,160102518,160103745,160104673	159969395,159991323,160009134,160010785,160024704,160027314,160029655,160032713,160033107,160034522,160040724,160043288,160044657,160045882,160046645,160047336,160047907,160048543,160050652,160056525,160058124,160059098,160060717,160061646,160061928,160062619,160063630,160064531,160064901,160068385,160070058,160072036,160072884,160073469,160073975,160075996,160078362,160079787,160080275,160084184,160085131,160088147,160089253,160090103,160096625,160102671,160103815,160106551	0.866667
GM12878	chr5	97088991	97089000	97088999	+	High_confidence	3	4	8	0.243538	2.807355	chr5	97088919	97089287	LTR|ERVL-MaLR|THE1B	+	chr5	97089074	97437217	LIX1-AS1|ENST00000504578.2	+	97089074,97101758,97103025,97183007,97183504,97431743,97436552	97089204,97102132,97103094,97183240,97183669,97431900,97437217	0.875000
GM12878	chr3	106255516	106255528	106255527	-	High_confidence	5	5	15	0.456634	3.182006	chr3	106253080	106255986	LINE|L1|L1PA16	+	chr3	106246984	106256075	MSTRG.17407.1	-	106246984	106256075	0.600000
GM12878	chr20	18794077	18794086	18794077	+	High_confidence	99	99	252	7.671447	4.026615	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.980159
GM12878	chr7	101217578	101217599	101217580	-	High_confidence	11	21	45	1.369901	4.817053	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.933333
GM12878	chr7	30179130	30179177	30179176	-	High_confidence	10	11	37	1.126363	4.892147	chr7	30179124	30179307	SINE|MIR|MIRb	+	chr7	30176386	30179014	AC007036.1|ENST00000430537.1	-	30176386,30178936	30176982,30179014	0.729730
GM12878	chr1	167937103	167937126	167937125	+	High_confidence	4	5	17	0.517518	3.750000	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167937152	167993330	DCAF6|ENST00000455334.5	+	167937152,167951799,167966628,167974829,167987494,167991203,167993225	167937252,167951861,167966721,167975015,167987608,167991339,167993330	0.764706
GM12878	chrX	18467392	18467393	18467392	+	RAMPAGE_only	7	7	9	0.273980	2.725481	chrX	18467091	18467553	LTR|ERVL|LTR32	+	chrX	18442274	18619944	CDKL5|ENST00000463994.4	+	18442274,18506934,18510819,18564476,18575353,18579847,18581890,18584262,18587953,18595347,18598461,18603901,18608810,18609464,18613151,18619866	18442390,18507160,18510854,18564522,18575490,18579968,18581950,18584353,18588143,18595428,18598613,18604868,18608912,18609570,18613275,18619944	0.888889
GM12878	chr12	16832335	16832337	16832336	-	RAMPAGE_only	38	70	74	2.252727	5.468359	chr12	16832155	16832513	LTR|ERVL-MaLR|THE1D	-	chr12	16551181	16610594	LMO3|ENST00000541846.5	-	16551181,16560412,16600654,16610507	16551327,16560538,16600868,16610594	0.581081
GM12878	chr8	143281653	143281687	143281678	-	High_confidence	50	74	369	11.233191	5.266575	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280165	143281660	MINCR|ENST00000517411.1	-	143280165,143280881,143281481	143280515,143280997,143281660	0.628726
GM12878	chr3	48479418	48479459	48479458	-	High_confidence	54	57	164	4.992529	5.994509	chr3	48479425	48479570	LINE|L1|L1M4	+	chr3	48469359	48479559	SHISA5|ENST00000486344.5	-	48469359,48469727,48479176	48469573,48469843,48479559	0.896341
GM12878	chr7	1938511	1938524	1938511	-	High_confidence	7	7	24	0.730614	4.004886	chr7	1938357	1938711	LINE|L1|L1M5	+	chr7	1898199	1938554	MSTRG.21552.11	-	1898199,1936686,1938436	1898390,1936897,1938554	0.791667
GM12878	chr7	101308293	101308325	101308299	+	High_confidence	106	150	577	17.565179	6.290199	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.941075
GM12878	chr3	134485415	134485490	134485443	-	High_confidence	25	31	222	6.758180	5.668530	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.936937
GM12878	chr20	44671698	44671727	44671726	-	High_confidence	163	167	386	11.750709	5.382097	chr20	44671177	44675874	LTR|ERV1|HERVH-int	+	chr20	44656450	44671739	LINC01260|NR_034104.1	-	44656450,44658994,44659710,44663353,44671638	44657051,44659181,44659778,44663553,44671739	0.722798
GM12878	chr19	7699782	7699818	7699785	-	High_confidence	7	8	23	0.700172	4.392317	chr19	7699767	7699822	LINE|CR1|L3	-	chr19	7688773	7700083	FCER2|ENST00000597312.5	-	7688773,7690158,7690405,7696824,7697012,7697235,7697526,7698355,7699738,7699974	7689430,7690265,7690557,7696914,7697075,7697298,7697589,7698854,7699845,7700083	0.869565
GM12878	chr12	103882931	103882962	103882931	-	High_confidence	5	5	16	0.487076	3.625000	chr12	103882895	103883163	LINE|L2|L2b	+	chr12	103843748	103882588	TTC41P|ENST00000548527.5	-	103843748,103857109,103861117,103862143,103866379,103870270,103882531	103844419,103857243,103861270,103862291,103866551,103870410,103882588	0.875000
GM12878	chr5	131224632	131224667	131224664	-	High_confidence	11	12	30	0.913268	4.582119	chr5	131224178	131224746	LINE|L2|L2	+	chr5	131208936	131224462	MSTRG.19735.1	-	131208936,131223948	131210153,131224462	0.900000
GM12878	chr16	30429226	30429268	30429230	-	High_confidence	5	5	23	0.700172	3.879664	chr16	30429210	30429354	SINE|MIR|MIR3	+	chr16	30423913	30429289	DCTPP1|ENST00000568434.1	-	30423913,30429056	30424533,30429289	0.956522
GM12878	chr10	102397672	102397673	102397672	+	High_confidence	9	9	9	0.273980	3.169925	chr10	102397720	102397921	SINE|MIR|MIRb	+	chr10	102398072	102400061	NFKB2|ENST00000336486.5	+	102398072,102398211,102398384,102398738,102399287,102399576,102399926	102398085,102398297,102398523,102398864,102399497,102399718,102400061	1.000000
GM12878	chr11	72740153	72740169	72740153	-	High_confidence	7	7	21	0.639287	3.594466	chr11	72740024	72740228	DNA|hAT-Tip100|MER91A	-	chr11	72685074	72740216	MSTRG.4325.5	-	72685074,72686041,72687438,72687687,72688454,72692752,72693324,72693691,72694979,72695386,72695541,72695717,72696548,72696982,72697322,72697597,72697910,72699004,72699416,72701648,72702904,72704151,72705804,72707174,72709869,72710384,72711020,72711429,72712195,72712437,72713175,72714151,72726619,72732514,72738952	72685681,72686191,72687502,72687738,72688537,72692785,72693470,72693805,72695097,72695455,72695628,72695865,72696654,72697195,72697486,72697649,72698106,72699107,72699552,72701783,72703079,72704334,72705890,72707374,72709976,72710587,72711141,72711499,72712339,72712568,72713243,72714321,72727172,72732597,72740216	1.000000
GM12878	chr9	131737880	131737898	131737880	-	High_confidence	6	6	10	0.304423	3.321928	chr9	131737682	131737984	SINE|Alu|AluY	+	chr9	131576769	131737538	RAPGEF1|ENST00000372189.7	-	131576769,131580262,131582604,131584310,131584517,131587735,131587941,131588800,131589885,131592098,131596297,131598198,131602060,131621795,131625921,131627912,131628548,131629101,131630235,131638634,131643238,131650128,131650809,131737404	131579647,131580391,131582702,131584412,131584596,131587830,131588026,131588986,131589978,131592183,131596373,131598310,131602149,131621998,131626422,131628096,131628672,131629254,131630324,131638791,131643417,131650242,131650949,131737538	0.500000
GM12878	chr1	28018028	28018032	28018028	-	RAMPAGE_only	4	4	11	0.334865	3.121928	chr1	28017913	28018225	SINE|Alu|AluSz6	+	chr1	28010795	28035679	EYA3|ENST00000468665.1	-	28010795,28013110,28017153,28035543	28011086,28013294,28017239,28035679	0.636364
GM12878	chr5	333502	333521	333502	+	RAMPAGE_only	2	2	9	0.273980	2.947703	chr5	333315	333615	SINE|Alu|AluSx1	+	chr5	343527	353911	AHRR|ENST00000504625.1	+	343527,343892,353729	343708,343964,353911	0.777778
GM12878	chr3	101518621	101518666	101518642	+	High_confidence	7	8	20	0.608845	3.326360	chr3	101518577	101518728	LINE|L2|L2	-	chr3	101518866	101523887	FAM172BP|NR_036433.2	+	101518866,101521881	101519155,101523887	0.850000
GM12878	chr2	68364615	68364637	68364615	+	High_confidence	7	7	30	0.913268	3.606239	chr2	68364501	68364803	SINE|Alu|AluSx	-	chr2	68364056	68397453	MSTRG.13997.2	+	68364056,68364288,68380327,68380722,68382541,68386501,68388386,68393161,68394106,68395679	68364134,68365393,68380483,68380904,68382633,68386686,68388491,68393245,68394176,68397453	1.000000
GM12878	chr6	73729136	73729150	73729149	+	RAMPAGE_only	8	8	26	0.791499	3.474505	chr6	73728830	73729330	LTR|ERVL-MaLR|MLT1F1	-	chr6	73722940	73810172	CD109|ENST00000649530.1	+	73722940,73723250,73730343,73736382,73756642,73758943,73762383,73762740,73763575,73765929,73766758,73766947,73768054,73771428,73780423,73781258,73782613,73783706,73785363,73787233,73788467,73792625,73803219,73806843,73808082,73809983	73723159,73723279,73730574,73736508,73756682,73759028,73762480,73762882,73763685,73766154,73766860,73767010,73768231,73771581,73780498,73781319,73782755,73783824,73785477,73787452,73788612,73792802,73803301,73807072,73808248,73810172	0.961538
GM12878	chr2	113238088	113238089	113238088	+	RAMPAGE_only	4	4	7	0.213096	2.521641	chr2	113238066	113238369	SINE|Alu|AluSx3	-	chr2	113236268	113267023	PAX8-AS1|NR_015377.2	+	113236268,113250766,113255389,113259263,113263277,113265475	113236622,113250906,113255549,113259584,113263454,113267023	0.714286
GM12878	chr13	22883974	22884027	22883974	+	High_confidence	12	15	61	1.856977	4.982314	chr13	22883559	22884029	LTR|ERV1|LTR2B	+	chr13	22883930	22910377	MSTRG.6291.2	+	22883930,22892610	22884295,22910377	0.573770
GM12878	chr10	96701430	96701445	96701444	-	RAMPAGE_only	18	18	47	1.430786	4.713641	chr10	96701398	96701512	SINE|MIR|MIRb	+	chr10	96628397	96720514	MSTRG.3228.6	-	96628397,96645472,96648658,96651247,96651508,96652697,96656797,96700802,96709566,96720381	96628493,96645662,96648855,96651380,96651651,96652842,96656934,96702494,96709983,96720514	0.957447
GM12878	chr12	10553364	10553365	10553364	+	High_confidence	4436	4608	4850	147.644922	7.400912	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.856907
GM12878	chr8	134572633	134572677	134572676	-	RAMPAGE_only	26	27	64	1.948304	5.458150	chr8	134572592	134572743	DNA|TcMar-Mariner|MARNA	-	chr8	134478024	134565671	ZFAT|ENST00000518408.5	-	134478024,134509618,134512474,134520882,134532833,134565332	134478721,134509749,134512601,134521001,134532972,134565671	0.578125
GM12878	chr20	1651413	1651435	1651431	-	High_confidence	7	7	15	0.456634	2.842371	chr20	1651193	1651608	LTR|ERVL|MER88	+	chr20	1629151	1651377	SIRPG|ENST00000381580.5	-	1629151,1630221,1635266,1636187,1649051,1651223	1629636,1630306,1635599,1636505,1649408,1651377	0.933333
GM12878	chr10	30422491	30422536	30422511	+	RAMPAGE_only	5	5	20	0.608845	3.646439	chr10	30422353	30422671	DNA|hAT-Blackjack|MER63B	-	chr10	30433936	30461832	MAP3K8|ENST00000263056.5	+	30433936,30437175,30438915,30447781,30450257,30451637,30458083,30459254,30460705	30434378,30437406,30439274,30447949,30450519,30451744,30458236,30459501,30461832	0.600000
GM12878	chr12	121391940	121391960	121391959	+	High_confidence	4	6	13	0.395749	3.700440	chr12	121391948	121391996	SINE|MIR|MIR1_Amn	-	chr12	121391961	121399859	AC048337.1|ENST00000557474.1	+	121391961,121399575	121392229,121399859	0.538462
GM12878	chr8	11493996	11494028	11493998	+	High_confidence	10	13	37	1.126363	4.627987	chr8	11493862	11494036	SINE|MIR|MIRb	-	chr8	11494000	11564604	BLK|ENST00000259089.8	+	11494000,11543223,11546051,11548031,11549023,11550158,11554742,11555331,11556657,11557961,11561301,11562978,11563902	11494591,11543347,11546103,11548125,11549122,11550262,11554889,11555484,11556837,11558038,11561452,11563110,11564604	0.945946
GM12878	chr2	68385901	68385908	68385901	+	RAMPAGE_only	6	6	23	0.700172	3.844233	chr2	68385450	68385975	LINE|L2|L2c	+	chr2	68387941	68395717	PLEK|ENST00000474788.1	+	68387941,68393161,68394106,68395679	68388491,68393245,68394176,68395717	0.652174
GM12878	chr4	10730275	10730284	10730275	-	RAMPAGE_only	5	5	10	0.304423	2.725481	chr4	10730253	10730446	LINE|L2|L2	+	chr4	10486394	10684865	CLNK|ENST00000226951.10	-	10486394,10501255,10507958,10513463,10520790,10525840,10528075,10532255,10540493,10542021,10542254,10558406,10564670,10566008,10571740,10584926,10597977,10667858,10684667	10490613,10501411,10508036,10513597,10520831,10525922,10528094,10532283,10540604,10542041,10542280,10558452,10564777,10566150,10571778,10584955,10598049,10667911,10684865	0.600000
GM12878	chr2	58032534	58032535	58032534	+	RAMPAGE_only	14	14	19	0.578403	3.892407	chr2	58032535	58033001	LTR|ERVL|MER70A	+	chr2	57907651	58033663	VRK2|ENST00000478687.5	+	57907651,58018015,58025664,58026743,58028297,58033226	57907839,58018086,58025770,58026861,58028398,58033663	0.894737
GM12878	chr19	491268	491269	491268	-	RAMPAGE_only	23	23	24	0.730614	3.969002	chr19	491110	491286	SINE|Alu|AluSz	+	chr19	490045	507833	AC005775.1|ENST00000592413.2	-	490045,501540,507375	490353,501624,507833	0.625000
GM12878	chr22	36482006	36482025	36482006	-	High_confidence	3	3	12	0.365307	2.594907	chr22	36481702	36481993	SINE|Alu|AluSc	-	chr22	36467035	36482030	TXN2|ENST00000216185.6	-	36467035,36476732,36480574,36481563	36467917,36476856,36480837,36482030	0.833333
GM12878	chr15	64930443	64930456	64930448	+	RAMPAGE_only	3	3	13	0.395749	3.251629	chr15	64930271	64930600	LINE|L2|L2a	-	chr15	64915864	64932514	ANKDD1A|ENST00000483400.5	+	64915864,64917385,64930821,64931486	64915900,64917502,64930920,64932514	0.538462
GM12878	chr12	55930641	55930642	55930641	+	High_confidence	14	16	16	0.487076	3.452820	chr12	55930357	55930665	SINE|Alu|AluSc8	-	chr12	55930971	55954015	DGKA|ENST00000331886.9	+	55930971,55936422,55937016,55937407,55937977,55938510,55938914,55939185,55939414,55940081,55940313,55940623,55940896,55941251,55941509,55941997,55942173,55951622,55952034,55952340,55952733,55953039,55953349,55953684	55931344,55936567,55937090,55937543,55938052,55938560,55938989,55939305,55939529,55940170,55940433,55940722,55940980,55941325,55941584,55942083,55942263,55951783,55952099,55952431,55952932,55953160,55953410,55954015	0.625000
GM12878	chr3	98733099	98733100	98733099	+	High_confidence	6	8	8	0.243538	2.750000	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.875000
GM12878	chrX	11768384	11768388	11768384	+	RAMPAGE_only	23	23	46	1.400344	3.820408	chrX	11768069	11768425	LINE|L1|L1MB7	-	chrX	11765537	11775740	MSL3|ENST00000647839.1	+	11765537,11766960,11768621,11772155,11772620,11774979	11765729,11767169,11768682,11772255,11772705,11775740	0.956522
GM12878	chr21	33968463	33968481	33968463	-	High_confidence	2	2	6	0.182654	2.584963	chr21	33968191	33968612	LTR|ERVL-MaLR|MLT1J	-	chr21	33967100	33968573	AP000569.1|ENST00000607953.1	-	33967100,33968232	33967350,33968573	1.000000
GM12878	chrX	19807510	19807554	19807538	-	RAMPAGE_only	30	30	140	4.261915	6.114809	chrX	19807399	19807742	LINE|L2|L2a	+	chrX	19533964	19799799	SH3KBP1|NM_001024666.2	-	19533964,19537716,19541924,19545921,19549973,19569102,19588642,19592066,19594948,19607937,19631863,19645399,19683822,19695611,19706880,19746317,19799633	19536458,19537780,19542193,19546050,19550083,19569188,19588802,19592147,19595000,19608045,19631958,19645475,19684028,19695741,19706984,19746441,19799799	0.914286
GM12878	chr19	19601182	19601185	19601182	+	RAMPAGE_only	4	4	11	0.334865	3.095795	chr19	19600957	19601452	LINE|L2|L2b	-	chr19	19606349	19608660	AC002306.1|ENST00000559614.2	+	19606349,19608139	19606765,19608660	0.818182
GM12878	chr8	11484439	11484440	11484439	-	RAMPAGE_only	5	5	8	0.243538	2.750000	chr8	11484295	11484694	LTR|ERVL-MaLR|MLT1B	-	chr8	11479202	11481068	AF131216.5|ENST00000644741.1	-	11479202,11480352,11481004	11479639,11480561,11481068	0.625000
GM12878	chr9	37188062	37188085	37188062	+	High_confidence	3	3	15	0.456634	2.606239	chr9	37188006	37188135	LINE|L1|L1MD2	-	chr9	37187444	37354802	MSTRG.23899.7	+	37187444,37302187,37304187,37305543,37327798,37349356,37354709	37187571,37302231,37304313,37305714,37327834,37349452,37354802	0.733333
GM12878	chr2	200889220	200889230	200889220	-	High_confidence	3	3	8	0.243538	3.000000	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200876963	200889266	PPIL3|ENST00000443398.5	-	200876963,200881420,200885697,200887612,200889243	200877037,200881488,200885772,200887685,200889266	0.500000
GM12878	chr16	2757779	2757799	2757779	+	High_confidence	2	2	7	0.213096	2.807355	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
GM12878	chr22	37027200	37027201	37027200	-	RAMPAGE_only	6	7	7	0.213096	2.584963	chr22	37026942	37027252	SINE|Alu|AluSp	-	chr22	36281276	36388067	MYH9|NM_002473.5	-	36281276,36284092,36284402,36285120,36285657,36285864,36286717,36288251,36288726,36289084,36291985,36293328,36293758,36294091,36294931,36295504,36296842,36298918,36300126,36300850,36301533,36302567,36303994,36305032,36305929,36306413,36309281,36312048,36314144,36316516,36318206,36319539,36320219,36320797,36321757,36322428,36326567,36327460,36341369,36348903,36387806	36282785,36284265,36284511,36285329,36285781,36285953,36286846,36288413,36288939,36289297,36292234,36293481,36293863,36294298,36295076,36295717,36297014,36299042,36300264,36301057,36301665,36302676,36304155,36305102,36306051,36306607,36309396,36312222,36314318,36316669,36318325,36319635,36320363,36320896,36321821,36322521,36326661,36327488,36341526,36349255,36388067	0.857143
GM12878	chr3	190121696	190121720	190121707	-	High_confidence	5	5	19	0.578403	3.641604	chr3	190121627	190121751	SINE|MIR|MIRb	+	chr3	189988914	190121678	P3H2|ENST00000426003.1	-	189988914,189994093,189995289,190121536	189989038,189994283,189995442,190121678	0.842105
GM12878	chrX	17026146	17026179	17026166	+	RAMPAGE_only	9	9	46	1.400344	4.516511	chrX	17026085	17026321	SINE|MIR|MIRc	+	chrX	16946861	17153272	REPS2|ENST00000303843.7	+	16946861,17006220,17022122,17025061,17029525,17047346,17052381,17054807,17062437,17068401,17069939,17074113,17077270,17103717,17133823,17135260,17138855,17147412	16947134,17006344,17022271,17025185,17029623,17047482,17052445,17054950,17062532,17068471,17069993,17074159,17077407,17103779,17133907,17135406,17138961,17153272	0.913043
GM12878	chr2	46565825	46565826	46565825	+	RAMPAGE_only	4	4	6	0.182654	2.584963	chr2	46565742	46566039	LINE|L2|L2c	-	chr2	46576127	46577125	RHOQ|ENST00000494370.1	+	46576127,46576560	46576251,46577125	0.833333
GM12878	chr15	80017726	80017793	80017738	-	High_confidence	114	125	681	20.731174	4.693126	chr15	80016339	80017800	LTR|ERV1|LTR12C	+	chr15	79960891	80017818	MSTRG.8462.2	-	79960891,80017604	79961174,80017818	0.676946
GM12878	chr14	65003617	65003627	65003626	+	RAMPAGE_only	3	3	8	0.243538	2.807355	chr14	65003411	65003932	LTR|ERV1|MER34C_	-	chr14	65012171	65032392	FNTB|ENST00000554210.5	+	65012171,65015624,65027452,65027697,65032358	65012389,65015716,65027599,65027781,65032392	0.625000
GM12878	chr15	57300329	57300405	57300338	+	High_confidence	87	87	427	12.998842	6.279962	chr15	57300291	57300572	SINE|Alu|AluSg	-	chr15	57300364	57307769	MSTRG.8139.2	+	57300364,57302901	57300924,57307769	0.967213
GM12878	chr15	66354122	66354123	66354122	-	RAMPAGE_only	25	25	25	0.761056	4.243856	chr15	66354028	66355027	LINE|L2|L2a	+	chr15	66336383	66356685	TIPIN|ENST00000566524.5	-	66336383,66341149,66349059,66349314,66352128,66352814,66356638	66337181,66341356,66349123,66349437,66352207,66352955,66356685	0.880000
GM12878	chr17	51153837	51153859	51153837	+	High_confidence	3	4	9	0.273980	3.169925	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51153664	51161898	NME1|ENST00000013034.3	+	51153664,51154224,51155650,51159979,51161159,51161727	51153724,51154444,51155780,51160081,51161272,51161898	0.555556
GM12878	chr13	111184173	111184174	111184173	+	RAMPAGE_only	40	40	46	1.400344	4.845351	chr13	111183991	111184342	LTR|ERVL-MaLR|THE1C	+	chr13	111186825	111305734	ARHGEF7|NM_001113513.1	+	111186825,111205288,111209871,111217678,111233204,111243871,111244198,111267547,111273813,111274730,111275531,111277586,111280271,111280537,111283138,111286146,111288353,111300747,111301477,111302990	111186990,111205373,111210002,111217880,111233293,111243966,111244294,111267670,111273952,111274790,111275678,111277673,111280350,111280677,111283363,111286240,111288443,111300847,111301532,111305734	0.847826
GM12878	chr11	73154869	73154879	73154869	-	RAMPAGE_only	2	2	7	0.213096	2.584963	chr11	73154840	73155181	SINE|Alu|AluSz	-	chr11	72838243	73142261	FCHSD2|ENST00000409418.8	-	72838243,72840876,72841453,72842620,72843150,72843448,72849754,72867864,72887469,72889828,72902542,72921827,72984087,72985061,72988963,73000989,73015808,73083694,73140030,73141856	72838874,72840959,72841583,72842841,72843328,72843532,72849889,72868026,72887574,72889945,72902638,72921950,72984216,72985116,72989097,73001134,73015885,73083740,73140128,73142261	0.714286
GM12878	chr19	3062818	3062842	3062822	-	High_confidence	3	3	12	0.365307	3.418296	chr19	3062800	3062899	SINE|MIR|MIRc	+	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	1.000000
GM12878	chr6	34673769	34673796	34673769	-	RAMPAGE_only	3	3	16	0.487076	3.640224	chr6	34673586	34673817	SINE|Alu|AluJb	+	chr6	34590508	34671956	C6orf106|ENST00000374021.1	-	34590508,34606554,34646600,34654624,34671835	34590600,34606904,34646798,34654779,34671956	0.625000
GM12878	chr3	16904840	16904841	16904840	+	RAMPAGE_only	24	25	26	0.791499	4.220176	chr3	16904644	16905020	LTR|ERVL-MaLR|THE1C	+	chr3	16884958	17090594	PLCL2|ENST00000615277.4	+	16884958,17009673,17014707,17042873,17067955,17089732	16885366,17012160,17014911,17042949,17068065,17090594	0.846154
GM12878	chr6	160031777	160031778	160031777	+	High_confidence	8	8	8	0.243538	3.000000	chr6	160031733	160031797	LINE|L2|L2a	+	chr6	160032431	160036725	IGF2R|ENST00000649737.1	+	160032431,160032941,160034418	160032713,160033107,160036725	1.000000
GM12878	chr2	58032731	58032796	58032775	+	RAMPAGE_only	12	14	71	2.161400	5.170434	chr2	58032535	58033001	LTR|ERVL|MER70A	+	chr2	57907651	58033663	VRK2|ENST00000478687.5	+	57907651,58018015,58025664,58026743,58028297,58033226	57907839,58018086,58025770,58026861,58028398,58033663	0.859155
GM12878	chr2	227164620	227164621	227164620	+	High_confidence	8	8	8	0.243538	3.000000	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.500000
GM12878	chr3	152244038	152244079	152244038	+	High_confidence	29	31	44	1.339459	4.042643	chr3	152243797	152244104	SINE|Alu|AluSx1	-	chr3	152243827	152300110	MBNL1|ENST00000477171.1	+	152243827,152244320,152299404	152244040,152244440,152300110	0.931818
GM12878	chr1	187072503	187072517	187072503	+	High_confidence	19	19	56	1.704766	5.097299	chr1	187072401	187072600	SINE|Alu|AluY	-	chr1	187072512	187480614	ERVMER61-1|ENST00000609113.2	+	187072512,187092824,187328990,187443627,187480289	187073024,187092946,187329060,187443726,187480614	0.625000
GM12878	chr11	108224064	108224113	108224074	+	High_confidence	10	12	30	0.913268	4.319903	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.800000
GM12878	chr7	74214874	74214914	74214913	+	RAMPAGE_only	5	8	12	0.365307	3.251629	chr7	74214861	74214946	Retroposon|SVA|SVA_A	+	chr7	74210022	74220734	LAT2|ENST00000470709.1	+	74210022,74214821,74215946,74216824,74219743,74219959,74220216,74220583,74220703	74210088,74215010,74216069,74216834,74219787,74220008,74220254,74220619,74220734	1.000000
GM12878	chr9	131668442	131668461	131668449	-	RAMPAGE_only	14	14	45	1.369901	5.109761	chr9	131668445	131668548	SINE|MIR|MIR	-	chr9	131626159	131677052	MSTRG.24493.6	-	131626159,131627912,131628548,131629101,131638634,131643238,131650809,131676556	131626422,131628096,131628672,131629254,131638791,131643417,131650949,131677052	0.533333
GM12878	chr20	54059019	54059020	54059019	-	High_confidence	8	10	12	0.365307	3.418296	chr20	54058856	54059213	LTR|ERVL-MaLR|THE1D	-	chr20	53943537	54059020	BCAS1|NM_001323347.1	-	53943537,53953431,53975388,53985286,53995011,53995891,54028391,54058084,54058646,54058974	53944996,53953695,53975430,53985499,53995056,53996050,54028972,54058154,54058723,54059020	1.000000
GM12878	chr7	6590262	6590299	6590285	+	High_confidence	4	6	31	0.943710	4.518397	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.516129
GM12878	chr9	137738707	137738743	137738712	+	High_confidence	101	106	505	15.373337	6.337674	chr9	137738221	137739080	LINE|L1|L1MB3	+	chr9	137738606	137754221	EHMT1|ENST00000495657.5	+	137738606,137743370,137743901,137752330,137754170	137738779,137743528,137744090,137752408,137754221	0.871287
GM12878	chr18	9117605	9117610	9117609	+	RAMPAGE_only	5	5	12	0.365307	3.584963	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	1.000000
GM12878	chr2	218287266	218287283	218287279	-	High_confidence	35	35	81	2.465822	4.721379	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.962963
GM12878	chr17	43124834	43124856	43124855	-	High_confidence	4	4	9	0.273980	2.725481	chr17	43124781	43124980	SINE|Alu|AluSx	-	chr17	43094111	43125300	BRCA1|ENST00000492859.5	-	43094111,43095845,43097243,43099774,43104121,43104867,43106455,43110464,43115725,43124016,43125270	43094860,43095922,43097289,43099880,43104261,43104956,43106533,43110580,43115779,43124115,43125300	0.555556
GM12878	chr9	39810033	39810116	39810033	-	High_confidence	46	47	138	4.201031	5.806484	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.731884
GM12878	chr12	80777492	80777493	80777492	+	High_confidence	7	7	10	0.304423	2.947703	chr12	80777297	80777665	LTR|ERVL-MaLR|THE1B	+	chr12	80778334	80794809	MSTRG.5719.1	+	80778334,80781440,80792356	80779045,80781509,80794809	0.600000
GM12878	chr12	68442145	68442146	68442145	-	High_confidence	4	4	6	0.182654	2.584963	chr12	68441987	68442338	LTR|ERVL-MaLR|THE1A	-	chr12	68333252	68442216	LINC02384|ENST00000546086.1	-	68333252,68442063	68333664,68442216	0.500000
GM12878	chr9	127451128	127451137	127451136	-	High_confidence	8	8	17	0.517518	3.125000	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.882353
GM12878	chr1	8664154	8664255	8664198	-	RAMPAGE_only	6	6	61	1.856977	5.369146	chr1	8664176	8664547	LINE|L2|L2b	+	chr1	8353942	8656371	RERE|ENST00000400907.6	-	8353942,8355418,8364745,8365811,8422726,8465924,8495062,8497404,8508626,8541213,8556474,8557417,8614560,8624309,8655972	8355120,8355599,8364838,8365974,8422807,8466023,8495162,8497529,8508675,8541318,8556571,8557523,8614686,8624380,8656371	0.983607
GM12878	chr6	31893362	31893363	31893362	-	RAMPAGE_only	6	6	6	0.182654	2.584963	chr6	31893329	31893615	SINE|Alu|AluJr	-	chr6	31879758	31896504	EHMT2|ENST00000480912.5	-	31879758,31880672,31881013,31882698,31882893,31883361,31883805,31884391,31884644,31884890,31886580,31886774,31886994,31887576,31887778,31888040,31888362,31888598,31888968,31889227,31889467,31892406,31892693,31892825,31893361,31896262	31880264,31880848,31881092,31882785,31883009,31883439,31883950,31884559,31884799,31885016,31886682,31886897,31887101,31887659,31887961,31888276,31888506,31888747,31889070,31889342,31889602,31892562,31892734,31892910,31893662,31896504	1.000000
GM12878	chr8	32927967	32927981	32927976	+	RAMPAGE_only	27	30	86	2.618034	5.691514	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.709302
GM12878	chr14	95327933	95328017	95327944	-	High_confidence	35	35	217	6.605969	6.310758	chr14	95327757	95328046	LINE|L2|L2	+	chr14	95326106	95328071	MSTRG.7457.1	-	95326106,95327835	95326837,95328071	0.940092
GM12878	chr6	83086989	83087024	83086989	+	RAMPAGE_only	27	28	173	5.266510	5.532946	chr6	83086937	83087482	LINE|L2|L2a	-	chr6	83096728	83168331	DOP1A|ENST00000369739.7	+	83096728,83096924,83100704,83108909,83110124,83113322,83118887,83119774,83120682,83121929,83122862,83124704,83125165,83125499,83128886,83130122,83132175,83134186,83135618,83137172,83139999,83140220,83141920,83145523,83147235,83148758,83151592,83151882,83152287,83153510,83153893,83154179,83155950,83157181,83158566,83159795,83162789,83164659,83167861	83096823,83097115,83100886,83109080,83110314,83113421,83118987,83119857,83120791,83122050,83122982,83124819,83125195,83125733,83129508,83130397,83132328,83134287,83135878,83139162,83140111,83140403,83142046,83145658,83147291,83148863,83151659,83152027,83152367,83153620,83154043,83154241,83156103,83157318,83158622,83159960,83162919,83164719,83168331	0.809249
GM12878	chr2	27350389	27350390	27350389	-	RAMPAGE_only	8	8	11	0.334865	2.732159	chr2	27350219	27350401	DNA|hAT-Charlie|MER5A	+	chr2	27325848	27356492	GTF3C2|ENST00000359541.6	-	27325848,27327176,27328036,27328467,27328843,27329120,27329378,27333654,27333973,27335597,27335916,27336197,27337243,27337480,27337925,27341947,27342825,27343307,27356086	27326893,27327284,27328189,27328596,27328931,27329282,27329523,27333784,27333999,27335706,27336028,27336425,27337342,27337558,27338020,27342233,27343147,27343578,27356492	1.000000
GM12878	chr11	121590362	121590397	121590396	+	High_confidence	119	199	340	10.350366	5.411769	chr11	121590407	121590570	DNA|hAT-Charlie|MER5A1	+	chr11	121590418	121629684	SORL1|ENST00000527934.1	+	121590418,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121590897,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121629684	0.973529
GM12878	chr13	72781477	72781478	72781477	-	High_confidence	6	6	9	0.273980	2.947703	chr13	72781431	72781550	SINE|MIR|MIRc	+	chr13	72757442	72781854	MSTRG.6565.2	-	72757442,72760528,72761362,72761645,72761922,72763450,72765971,72768784,72770903,72771080,72771794,72772158,72772692,72773683,72773945,72775210,72775924,72777419,72778186,72780845,72781604	72759878,72760651,72761521,72761814,72762137,72763607,72766058,72768912,72770988,72771145,72771896,72772275,72772839,72773821,72774059,72775375,72776092,72777493,72778380,72781356,72781854	1.000000
GM12878	chr12	7749528	7749551	7749550	-	High_confidence	2	3	8	0.243538	2.750000	chr12	7749271	7749579	SINE|Alu|AluSz6	+	chr12	7729414	7749473	CLEC4C|NM_203503.1	-	7729414,7730796,7737428,7741420,7747317,7749112	7729740,7730912,7737574,7741531,7747478,7749473	1.000000
GM12878	chr14	103712932	103712933	103712932	-	High_confidence	5	5	7	0.213096	2.807355	chr14	103712860	103713310	LTR|ERV1|MER31A	+	chr14	103697617	103712104	XRCC3|ENST00000553264.5	-	103697617,103699132,103699363,103703172,103707002,103708521,103711032,103711465	103699017,103699179,103699576,103703327,103707215,103708659,103711245,103712104	1.000000
GM12878	chr18	51028409	51028412	51028411	+	High_confidence	38	48	60	1.826535	5.383598	chr18	51028217	51028743	LTR|ERVL-MaLR|MLT1F2	+	chr18	51028393	51048816	SMAD4|ENST00000588860.5	+	51028393,51046919,51048685	51028665,51047295,51048816	0.750000
GM12878	chr19	41535400	41535415	41535414	+	High_confidence	4	4	8	0.243538	2.807355	chr19	41534903	41535457	LINE|L1|L1PB	+	chr19	41535182	41536900	LINC01480|ENST00000597199.1	+	41535182	41536900	0.500000
GM12878	chr15	53975023	53975063	53975043	-	High_confidence	2	2	10	0.304423	2.921928	chr15	53974757	53975143	LTR|ERVL-MaLR|MLT1F1	-	chr15	53948205	53974968	AC084759.2|ENST00000558920.1	-	53948205,53955768,53972669,53974817	53948608,53955831,53972784,53974968	0.900000
GM12878	chr12	96572318	96572319	96572318	+	RAMPAGE_only	21	22	30	0.913268	4.323161	chr12	96572154	96572433	LINE|L2|L2c	-	chr12	96540136	96644210	CFAP54|ENST00000554108.6	+	96540136,96540836,96547901,96554181,96554675,96576584,96580596,96580919,96589426,96592489,96594290,96598644,96621589,96623766,96625717,96626812,96630092,96630550,96644177	96540245,96540987,96547978,96554310,96554802,96576761,96580689,96581105,96589563,96592637,96594446,96598767,96621721,96623881,96625807,96626939,96630204,96630651,96644210	0.566667
GM12878	chr15	56364893	56364894	56364893	+	High_confidence	9	10	11	0.334865	3.459432	chr15	56364803	56365024	SINE|MIR|MIR	-	chr15	56365423	56445997	TEX9|NM_001286449.1	+	56365423,56365578,56373440,56383951,56388471,56389317,56391242,56394164,56394660,56412301,56427604,56428366,56445670	56365477,56365893,56373504,56384031,56388520,56389400,56391418,56394247,56394834,56412436,56427739,56428473,56445997	0.636364
GM12878	chr5	150092623	150092624	150092623	-	RAMPAGE_only	13	16	19	0.578403	3.947703	chr5	150092452	150092809	LTR|ERVL-MaLR|THE1B	-	chr5	150053290	150086640	CSF1R|NM_001288705.1	-	150053290,150054321,150055236,150056025,150056218,150057286,150057503,150059699,150060861,150061490,150061722,150068214,150069872,150070181,150070455,150073300,150077275,150078111,150080051,150080766,150086378	150054224,150054430,150055336,150056137,150056341,150057384,150057592,150059862,150060972,150061595,150061849,150068330,150070063,150070302,150070571,150073493,150077435,150078248,150080336,150081024,150086640	0.526316
GM12878	chr19	46350792	46350870	46350849	+	RAMPAGE_only	46	52	115	3.500859	5.009926	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.947826
GM12878	chr13	46374832	46374833	46374832	-	RAMPAGE_only	34	34	41	1.248132	4.787144	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46371940	46378645	RUBCNL|ENST00000439642.1	-	46371940,46377889,46378446	46372597,46378005,46378645	0.829268
GM12878	chr10	133388388	133388398	133388392	+	RAMPAGE_only	4	4	13	0.395749	3.418296	chr10	133388146	133388473	LINE|L1|L1PA13	-	chr10	133379527	133391694	PAOX|ENST00000368535.2	+	133379527,133379998,133381459,133383959,133388955,133389589,133391311	133379670,133380485,133381659,133384212,133389068,133389747,133391694	0.615385
GM12878	chr6	144349109	144349121	144349109	+	RAMPAGE_only	187	192	343	10.441692	5.397783	chr6	144349009	144349307	SINE|Alu|AluY	-	chr6	144344100	144678552	MSTRG.21340.4	+	144344100,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405	144344304,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678552	0.868805
GM12878	chr3	108125043	108125048	108125047	+	High_confidence	47	85	129	3.927051	5.674821	chr3	108124858	108125222	LTR|ERVL-MaLR|THE1C	+	chr3	108124608	108139777	MSTRG.17411.1	+	108124608,108125047,108135143,108136313	108124810,108125142,108135350,108139777	0.612403
GM12878	chr22	20036369	20036376	20036369	+	RAMPAGE_only	9	9	17	0.517518	3.616875	chr22	20035825	20036418	LTR|ERV1|LTR71B	+	chr22	20021138	20065364	TANGO2|ENST00000401833.5	+	20021138,20036759,20043354,20052464,20053436,20055942,20061529,20063337,20064541	20021246,20037094,20043443,20052584,20053551,20056013,20061683,20063442,20065364	0.647059
GM12878	chr21	33945809	33945810	33945809	-	RAMPAGE_only	44	44	44	1.339459	3.652978	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
GM12878	chr10	84172021	84172104	84172094	-	High_confidence	2097	2152	4310	131.206106	6.947036	chr10	84171986	84172465	LTR|ERV1|LTR2B	-	chr10	84167227	84172093	MSTRG.3105.1	-	84167227,84170574	84170476,84172093	0.990951
GM12878	chr22	42932257	42932311	42932257	-	RAMPAGE_only	4	5	28	0.852383	4.450212	chr22	42931987	42932447	LINE|L2|L2a	+	chr22	42890943	42945873	PACSIN2|ENST00000418133.5	-	42890943,42893456,42912020,42945784	42891182,42893613,42912157,42945873	0.714286
GM12878	chr12	110667804	110667810	110667809	-	RAMPAGE_only	4	4	8	0.243538	2.521641	chr12	110667782	110667852	SINE|MIR|MIR1_Amn	-	chr12	110648685	110683267	HVCN1|ENST00000620084.4	-	110648685,110650167,110651216,110655233,110661163,110683224	110649475,110650280,110651448,110655338,110661448,110683267	0.875000
GM12878	chr9	20658732	20658749	20658748	+	High_confidence	3	3	8	0.243538	2.521641	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658318	20675229	MSTRG.23766.3	+	20658318,20673619	20658826,20675229	0.625000
GM12878	chr9	128682808	128682809	128682808	+	High_confidence	4	4	7	0.213096	2.807355	chr9	128682667	128682974	SINE|Alu|AluYm1	-	chr9	128683423	128693998	MSTRG.24449.1	+	128683423,128683779,128691169,128691857,128692661,128692867,128693637,128693895	128683446,128684007,128691227,128692000,128692765,128692981,128693808,128693998	0.714286
GM12878	chr12	55629264	55629276	55629275	-	RAMPAGE_only	3	3	9	0.273980	2.503258	chr12	55628823	55629256	LTR|ERVL|LTR67B	-	chr12	55434754	55585471	AC122685.1|ENST00000556750.5	-	55434754,55476548,55493090,55585414	55435131,55476601,55493158,55585471	0.888889
GM12878	chr14	95725406	95725428	95725427	+	RAMPAGE_only	12	12	23	0.700172	2.718789	chr14	95725236	95725714	LINE|L1|L1M1	-	chr14	95715479	95757656	AL139020.1|ENST00000556386.1	+	95715479,95717470,95755244	95715707,95717568,95757656	0.913043
GM12878	chr7	100209218	100209252	100209218	+	High_confidence	28	28	90	2.739803	5.584645	chr7	100208912	100209299	LTR|ERV1|MER57E1	-	chr7	100209209	100214382	MSTRG.22201.19	+	100209209,100211010,100211437,100211794,100213734,100214006	100209300,100211185,100211539,100211876,100213806,100214382	0.866667
GM12878	chr7	54759955	54759974	54759955	-	High_confidence	4	4	8	0.243538	2.750000	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.500000
GM12878	chr3	17740299	17740325	17740299	-	High_confidence	5	5	17	0.517518	3.750000	chr3	17740032	17740349	SINE|Alu|AluSx1	+	chr3	17157161	17740907	TBC1D5|ENST00000253692.11	-	17157161,17166766,17167748,17185108,17214206,17238162,17258505,17291894,17307991,17372074,17374470,17374628,17376524,17383912,17403180,17404693,17404871,17406417,17428449,17508473,17623848,17739342	17161256,17166928,17167828,17185208,17214370,17238419,17258591,17292001,17308134,17372247,17374540,17374679,17376613,17384015,17403248,17404768,17404961,17406526,17428519,17508605,17623913,17740907	0.882353
GM12878	chr2	196414944	196414955	196414954	-	RAMPAGE_only	6	6	14	0.426192	3.521641	chr2	196414518	196414992	LTR|ERV1|LTR78	-	chr2	196199274	196409606	MSTRG.14780.7	-	196199274,196215864,196217007,196220038,196220794,196222210,196225771,196228101,196240448,196242083,196253919,196257822,196271192,196274020,196278527,196292564,196306487,196307129,196307934,196317273,196318551,196320338,196322477,196324979,196329574,196334423,196343656,196361811,196409420	196201388,196215977,196217093,196220153,196220941,196222340,196225870,196228254,196240562,196242204,196254029,196257906,196271289,196274123,196278662,196292750,196306612,196307233,196308085,196317369,196319925,196320439,196322620,196325149,196329650,196334518,196343764,196362052,196409606	0.714286
GM12878	chr12	50249205	50249245	50249244	-	High_confidence	12	18	53	1.613439	5.005946	chr12	50249233	50249436	SINE|MIR|MIRb	+	chr12	50175787	50249893	MSTRG.5381.1	-	50175787,50181903,50192451,50195829,50200776,50204551,50205983,50222020,50231664,50248632,50249682	50178069,50182037,50192561,50195887,50200884,50204700,50206068,50222485,50231710,50248774,50249893	0.924528
GM12878	chr8	116730241	116730250	116730241	-	RAMPAGE_only	4	4	9	0.273980	2.750000	chr8	116730180	116730513	DNA|hAT-Charlie|MER1B	+	chr8	116648805	116755784	EIF3H|ENST00000518949.5	-	116648805,116655855,116657214,116658812,116697052,116755665	116648926,116656005,116657314,116658980,116697237,116755784	0.888889
GM12878	chr14	91242139	91242146	91242139	+	High_confidence	6	8	18	0.547961	3.836592	chr14	91241759	91242172	LINE|L2|L2a	-	chr14	91242758	91250835	AL135818.1|ENST00000553725.5	+	91242758,91244354,91250764	91243013,91244499,91250835	0.611111
GM12878	chr4	42628101	42628124	42628123	-	RAMPAGE_only	7	7	17	0.517518	3.875000	chr4	42627857	42628150	LINE|L2|L2c	+	chr4	42581681	42657093	MSTRG.18362.8	-	42581681,42586348,42588259,42616032,42624535,42625613,42626994,42656824	42581732,42586476,42600518,42616078,42624634,42625713,42627109,42657093	0.882353
GM12878	chrX	7147267	7147288	7147287	+	High_confidence	27	27	78	2.374496	4.800471	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.897436
GM12878	chr13	30377168	30377202	30377191	-	High_confidence	24	25	72	2.191842	4.666645	chr13	30377180	30377360	DNA|hAT-Charlie|MER5A	+	chr13	30357741	30377145	LINC00426|ENST00000420219.5	-	30357741,30358253,30363160,30372284,30375466,30376826	30357889,30358376,30363226,30372374,30375776,30377145	0.944444
GM12878	chr3	99844851	99844852	99844851	+	RAMPAGE_only	12	17	17	0.517518	3.410417	chr3	99844702	99845027	LTR|ERVL-MaLR|THE1D	+	chr3	99817882	100172404	CMSS1|ENST00000491299.5	+	99817882,100141529,100146972,100160429,100162302,100166334,100167737,100171838,100172315	99818043,100141645,100147061,100160501,100162432,100166394,100167840,100171899,100172404	0.882353
GM12878	chr22	24011756	24011757	24011756	+	High_confidence	21	21	21	0.639287	3.844233	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.952381
GM12878	chr17	42661584	42661585	42661584	+	RAMPAGE_only	20	21	21	0.639287	4.106603	chr17	42661358	42661959	LTR|ERVL|MER21A	+	chr17	42659306	42666822	TUBG2|ENST00000588870.1	+	42659306,42660148,42660638,42663376,42665475,42665677,42666086,42666322,42666602	42659946,42660316,42660707,42663503,42665562,42665827,42666239,42666484,42666822	0.904762
GM12878	chr14	81170390	81170414	81170412	-	High_confidence	5	7	23	0.700172	3.784942	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.826087
GM12878	chr7	101990089	101990113	101990089	+	RAMPAGE_only	9	9	48	1.461228	4.833859	chr7	101990076	101990361	SINE|Alu|AluJo	+	chr7	101959389	102104459	CUX1|ENST00000606749.1	+	101959389,102028097,102070338,102097363,102104335	101959601,102028145,102070417,102097501,102104459	0.625000
GM12878	chr15	40894505	40894519	40894518	+	High_confidence	4	4	9	0.273980	2.725481	chr15	40894565	40894630	LINE|CR1|X6A_LINE	+	chr15	40894466	40902861	VPS18|ENST00000558474.1	+	40894466,40895937,40898906,40902615	40894859,40896079,40898998,40902861	0.888889
GM12878	chr1	30746843	30746905	30746843	-	High_confidence	12	13	43	1.309017	4.135940	chr1	30746680	30746890	SINE|MIR|MIRb	+	chr1	30733888	30746229	LAPTM5|ENST00000464569.1	-	30733888,30735172,30737603,30738939,30739808,30741639,30742455,30745917	30733917,30735265,30737699,30739062,30739937,30741716,30742549,30746229	1.000000
GM12878	chr14	22566443	22566450	22566443	-	RAMPAGE_only	3	4	8	0.243538	2.750000	chr14	22566338	22566626	SINE|Alu|AluSp	-	chr14	22564906	22575089	DAD1|ENST00000489532.6	-	22564906,22567087,22575058	22565137,22567164,22575089	1.000000
GM12878	chr3	39407626	39407672	39407671	+	High_confidence	6	6	16	0.487076	3.702820	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.750000
GM12878	chr9	20658336	20658427	20658338	+	High_confidence	88	127	503	15.312453	6.396660	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658318	20675229	MSTRG.23766.3	+	20658318,20673619	20658826,20675229	0.630219
GM12878	chr15	44882357	44882390	44882361	-	High_confidence	4	4	19	0.578403	3.721612	chr15	44877921	44882678	LTR|ERV1|HUERS-P1-int	-	chr15	44827059	44882610	MSTRG.7969.5	-	44827059,44828449,44831528,44832326,44835181,44839370,44847397,44850353,44861784,44881494,44882317	44827221,44828571,44831703,44832392,44835300,44839530,44847562,44850387,44862311,44881605,44882610	0.894737
GM12878	chr22	36481305	36481353	36481334	-	High_confidence	12	15	53	1.613439	4.454014	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.698113
GM12878	chr19	55255718	55255774	55255718	-	High_confidence	53	57	256	7.793216	6.014961	chr19	55255671	55256025	LINE|L2|L2b	+	chr19	55245343	55255769	PPP6R1|ENST00000592242.1	-	55245343,55245491,55246876,55255674	55245402,55245678,55247109,55255769	0.867188
GM12878	chr2	171433377	171433426	171433377	-	High_confidence	5	5	35	1.065479	4.616875	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171331807	171433116	METTL8|ENST00000460539.5	-	171331807,171339183,171392042,171433025	171331867,171339554,171392197,171433116	0.542857
GM12878	chr3	125110569	125110632	125110597	-	High_confidence	25	25	75	2.283169	5.704511	chr3	125110543	125110700	DNA|hAT-Charlie|MER5A	-	chr3	125107880	125110718	SLC12A8|ENST00000479231.1	-	125107880,125110188	125108126,125110718	0.826667
GM12878	chr15	80059918	80059933	80059932	+	High_confidence	92	110	324	9.863290	4.220129	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.966049
GM12878	chr20	44968211	44968245	44968211	+	RAMPAGE_only	5	5	19	0.578403	3.932138	chr20	44968139	44968436	SINE|Alu|AluSc8	-	chr20	44966521	45075608	STK4|ENST00000372801.5	+	44966521,44972077,44978442,44981828,44987131,44995089,44997168,45000391,45001166,45024972,45053085,45075017	44966603,44972158,44978571,44981943,44987296,44995257,44997306,45000520,45001353,45025130,45053180,45075608	0.842105
GM12878	chr11	67485217	67485241	67485240	+	High_confidence	3	5	12	0.365307	3.277613	chr11	67485154	67485495	LTR|ERV1|LTR1A2	-	chr11	67484321	67491103	MSTRG.4222.4	+	67484321,67487005,67490037,67490315,67490787	67486188,67487185,67490214,67490457,67491103	0.666667
GM12878	chr6	159114787	159114796	159114795	+	RAMPAGE_only	3	5	6	0.182654	2.584963	chr6	159114464	159114886	LINE|L1|L1MB7	+	chr6	159107790	159116053	AL356417.1|ENST00000421161.1	+	159107790,159109314,159115431,159115773	159108153,159109439,159115508,159116053	1.000000
GM12878	chr22	37244601	37244602	37244601	-	High_confidence	7	7	7	0.213096	2.521641	chr22	37244541	37244786	LINE|L2|L2b	-	chr22	37225851	37244448	RAC2|ENST00000406508.5	-	37225851,37226670,37231230,37231931,37232800,37241586,37244289	37226039,37226803,37231390,37231994,37232918,37241658,37244448	1.000000
GM12878	chr18	7946878	7946898	7946878	+	High_confidence	8	8	14	0.426192	3.467720	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.857143
GM12878	chr1	110870808	110870866	110870845	+	High_confidence	15	21	72	2.191842	5.438066	chr1	110870731	110871665	LINE|L2|L2b	-	chr1	110870807	110899922	MSTRG.1303.1	+	110870807,110871176,110873155,110891391,110892344,110894326,110894959,110896652,110897808,110899123	110870995,110871259,110873248,110891471,110892533,110894401,110895055,110896733,110897892,110899922	0.833333
GM12878	chr16	57358959	57358976	57358959	+	High_confidence	5	5	10	0.304423	2.921928	chr16	57358954	57359069	SINE|MIR|MIR1_Amn	+	chr16	57358782	57366190	CCL22|NM_002990.4	+	57358782,57360436,57363503	57358889,57360560,57366190	1.000000
GM12878	chr16	72627651	72627662	72627651	-	High_confidence	7	7	12	0.365307	3.418296	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72479750	72627686	LINC01572|ENST00000563770.5	-	72479750,72491903,72523331,72540577,72555264,72570434,72617182,72627534	72479790,72491966,72523415,72540611,72555326,72570515,72617234,72627686	0.583333
GM12878	chr16	23557061	23557088	23557061	-	High_confidence	13	13	46	1.400344	4.743300	chr16	23557029	23557075	SINE|MIR|MIR1_Amn	+	chr16	23544507	23557054	EARS2|ENST00000564461.5	-	23544507,23552148,23556731	23544703,23552304,23557054	0.913043
GM12878	chr7	6257775	6257798	6257790	-	RAMPAGE_only	7	7	38	1.156806	4.912273	chr7	6257761	6258020	LTR|ERVL-MaLR|MLT1L	-	chr7	6161778	6272611	CYTH3|NM_004227.3	-	6161778,6165272,6165544,6165733,6170534,6170829,6171201,6173652,6177822,6187049,6187656,6190448,6272473	6165016,6165427,6165616,6165810,6170646,6170978,6171314,6173733,6177941,6187116,6187721,6190531,6272611	0.710526
GM12878	chr10	88887559	88887568	88887559	+	RAMPAGE_only	32	32	68	2.070073	4.989388	chr10	88887540	88887817	SINE|Alu|AluJb	-	chr10	88880186	88923502	STAMBPL1|NM_020799.3	+	88880186,88901655,88905442,88908701,88910915,88913100,88914533,88916679,88921282,88922336,88923167	88880638,88901738,88905660,88908777,88911011,88913458,88914658,88916817,88921395,88922436,88923502	0.691176
GM12878	chr5	177355869	177355870	177355869	-	RAMPAGE_only	7	7	7	0.213096	2.807355	chr5	177355706	177356068	LTR|ERVL-MaLR|MLT1J2	-	chr5	177331561	177351884	LMAN2|NM_006816.2	-	177331561,177334283,177337135,177337362,177337705,177338487,177351172,177351451	177332246,177334403,177337250,177337524,177337785,177338605,177351291,177351884	1.000000
GM12878	chr12	64883321	64883322	64883321	+	High_confidence	7	7	8	0.243538	2.807355	chr12	64882751	64883394	LTR|ERVL-MaLR|MLT1K	+	chr12	64883393	64977522	LINC02389|ENST00000535058.1	+	64883393,64900576,64974570	64883865,64900698,64977522	0.500000
GM12878	chr11	57568212	57568221	57568212	-	High_confidence	18	18	33	1.004594	4.220168	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	0.939394
GM12878	chr13	99496638	99496639	99496638	-	High_confidence	9	9	10	0.304423	2.725481	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.700000
GM12878	chr22	39144633	39144710	39144684	+	High_confidence	10	12	84	2.557149	5.156717	chr22	39144732	39144810	SINE|MIR|MIR3	+	chr22	39144639	39151606	MSTRG.16521.1	+	39144639	39151606	0.809524
GM12878	chr20	35070182	35070189	35070182	-	RAMPAGE_only	5	6	13	0.395749	3.251629	chr20	35069956	35070268	LTR|ERVL-MaLR|MLT1G1	+	chr20	35002403	35092807	TRPC4AP|ENST00000451813.6	-	35002403,35003409,35004457,35005694,35006434,35007549,35008663,35010186,35013007,35016007,35021189,35035122,35044504,35049865,35054975,35057513,35069295,35078045,35092613	35003283,35003616,35004570,35005803,35006575,35007640,35008747,35010288,35013066,35016139,35021332,35035308,35044712,35049994,35055031,35057571,35069412,35078174,35092807	0.846154
GM12878	chr7	75512723	75512757	75512756	-	RAMPAGE_only	4	4	11	0.334865	2.921928	chr7	75512722	75512831	SINE|Alu|AluYe5	+	chr7	75502929	75514784	PMS2P3|ENST00000529061.6	-	75502929,75507780,75510930,75512308,75512588,75514644	75503035,75507867,75511114,75512421,75512675,75514784	0.909091
GM12878	chr17	82076525	82076526	82076525	-	RAMPAGE_only	17	18	18	0.547961	3.124844	chr17	82076254	82076887	LINE|L1|L1MEc	-	chr17	81511345	81523847	ACTG1|ENST00000575994.5	-	81511345,81511902,81512231,81523641	81511626,81512142,81512360,81523847	0.944444
GM12878	chr15	74490278	74490290	74490289	-	High_confidence	14	14	30	0.913268	4.389898	chr15	74490025	74490757	LINE|L2|L2a	+	chr15	74478069	74490286	AC012435.1|ENST00000563287.1	-	74478069,74490235	74481403,74490286	0.500000
GM12878	chr5	116075387	116075408	116075387	+	RAMPAGE_only	4	4	9	0.273980	2.500000	chr5	116075193	116075547	LTR|ERVL-MaLR|THE1B	+	chr5	116084975	116293290	COMMD10|NM_016144.3	+	116084975,116087496,116091078,116092544,116134067,116291516,116292450	116085093,116087587,116091189,116092700,116134178,116291576,116293290	0.777778
GM12878	chr4	2748289	2748308	2748289	-	RAMPAGE_only	3	3	6	0.182654	2.584963	chr4	2748179	2748346	SINE|Alu|AluSx1	-	chr4	2745335	2756024	TNIP2|ENST00000507686.1	-	2745335,2747654,2755975	2745535,2747945,2756024	0.666667
GM12878	chr4	39627120	39627121	39627120	-	High_confidence	6747	6924	7388	224.907357	6.863177	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.865051
GM12878	chrX	16712889	16712959	16712958	-	High_confidence	7	7	29	0.882825	4.418157	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16587998	16712979	CTPS2|NM_019857.4	-	16587998,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712979	0.965517
GM12878	chr9	131676834	131676841	131676839	-	High_confidence	19	25	70	2.130958	5.477948	chr9	131676817	131677003	DNA|hAT-Charlie|MER5A	+	chr9	131626159	131677052	MSTRG.24493.6	-	131626159,131627912,131628548,131629101,131638634,131643238,131650809,131676556	131626422,131628096,131628672,131629254,131638791,131643417,131650949,131677052	0.800000
GM12878	chr21	29121989	29121993	29121989	+	High_confidence	120	129	284	8.645600	5.225996	chr21	29121887	29122110	DNA|hAT-Charlie|Charlie29a	+	chr21	29122054	29175889	MSTRG.15875.11	+	29122054,29130794,29133305,29149188,29159940,29174711	29122213,29130923,29133414,29149250,29160056,29175889	0.943662
GM12878	chr9	120926616	120926657	120926626	-	High_confidence	20	25	122	3.713955	5.069746	chr9	120926574	120926745	SINE|MIR|MIR3	+	chr9	120902392	120926895	TRAF1|NM_005658.4	-	120902392,120909229,120911335,120913327,120914234,120923704,120925935,120926549	120905238,120909378,120911513,120913738,120914300,120923792,120926301,120926895	0.754098
GM12878	chr11	65639849	65639895	65639861	+	High_confidence	17	18	74	2.252727	5.314718	chr11	65639882	65640011	SINE|MIR|MIRc	+	chr11	65639865	65650880	SIPA1|ENST00000527525.5	+	65639865,65640830,65642249,65642462,65644954,65645853,65646220,65646455,65646969,65647383,65649261,65649560,65649756,65649949,65650137,65650400,65650568	65640021,65641600,65642377,65642639,65645129,65645957,65646378,65646663,65647065,65647658,65649480,65649672,65649865,65650051,65650192,65650479,65650880	0.905405
GM12878	chr19	54662046	54662070	54662046	+	High_confidence	4	5	12	0.365307	3.584963	chr19	54661878	54662130	LTR|ERVL|ERVL-E-int	+	chr19	54662127	54670359	LILRB4|ENST00000391736.5	+	54662127,54662508,54662818,54663531,54663753,54664185,54664798,54665129,54665814,54666239,54666398,54666696,54667634,54667872	54662188,54662547,54663067,54663567,54664038,54664485,54664849,54665180,54665931,54666315,54666436,54666749,54667793,54670359	0.583333
GM12878	chr19	45450739	45450766	45450765	-	High_confidence	27	27	112	3.409532	6.089187	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.776786
GM12878	chr19	38427168	38427178	38427173	-	High_confidence	6	8	17	0.517518	3.454822	chr19	38426919	38427211	SINE|Alu|AluSp	+	chr19	38409057	38426305	RASGRP4|ENST00000589474.5	-	38409057,38409954,38410885,38411114,38411344,38412671,38412930,38413192,38413393,38414847,38417051,38418390,38419859,38420130,38420907,38421093,38421968,38426068	38409370,38410096,38410998,38411249,38411381,38412816,38413049,38413297,38413474,38415123,38417168,38418564,38419971,38420262,38420969,38421200,38422153,38426305	0.764706
GM12878	chr2	105329645	105329671	105329670	-	High_confidence	9	9	40	1.217690	4.953056	chr2	105329666	105329774	LTR|ERV1|LTR2752	-	chr2	105264389	105329714	TGFBRAP1|NM_001142621.2	-	105264389,105269271,105272854,105273543,105275559,105277613,105280381,105284315,105296355,105298510,105307613,105329624	105267559,105269705,105273014,105273690,105275703,105277671,105280723,105284398,105296510,105298705,105308315,105329714	1.000000
GM12878	chr19	45424446	45424483	45424452	-	High_confidence	6	6	20	0.608845	4.037401	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	0.950000
GM12878	chr2	73780308	73780310	73780309	-	High_confidence	4	6	8	0.243538	2.521641	chr2	73780308	73780779	LINE|L1|L1ME4b	-	chr2	73762183	73780157	DUSP11|ENST00000272444.7	-	73762183,73766417,73766827,73767160,73769264,73773799,73774912,73778300,73779873	73762859,73766594,73766903,73767207,73769325,73773923,73775044,73778376,73780157	0.875000
GM12878	chr12	9645304	9645305	9645304	+	RAMPAGE_only	13	14	17	0.517518	3.572469	chr12	9645124	9645474	LTR|ERVL-MaLR|THE1B	+	chr12	9642867	9658415	LOC374443|NR_046449.2	+	9642867,9653682,9655872,9656920	9643103,9653808,9655979,9658415	0.823529
GM12878	chr19	10168516	10168564	10168563	-	RAMPAGE_only	5	5	17	0.517518	3.572469	chr19	10168497	10168577	SINE|Alu|AluJb	+	chr19	10159911	10166671	DNMT1|ENST00000589349.5	-	10159911,10160017,10162666,10163325,10166597	10159922,10160418,10162748,10163360,10166671	0.941176
GM12878	chr1	23913571	23913595	23913571	-	High_confidence	1	2	7	0.213096	2.584963	chr1	23913517	23913659	SINE|MIR|MIRb	+	chr1	23870525	23913362	CNR2|ENST00000374472.4	-	23870525,23913245	23875662,23913362	0.857143
GM12878	chr19	4115089	4115092	4115089	-	RAMPAGE_only	7	7	13	0.395749	3.238901	chr19	4115065	4115244	LINE|L1|L1MC4a	-	chr19	4101070	4124072	MAP2K2|ENST00000599345.1	-	4101070,4101228,4102375,4103411,4110508,4117418,4123783	4101143,4101280,4102453,4103484,4110655,4117629,4124072	0.538462
GM12878	chr20	50817783	50817807	50817783	+	RAMPAGE_only	3	6	9	0.273980	2.503258	chr20	50817792	50817943	SINE|MIR|MIRb	+	chr20	50795099	50877177	MSTRG.15606.6	+	50795099,50818210,50830278,50841765,50876485	50795732,50818282,50830380,50841900,50877177	0.888889
GM12878	chr19	35408662	35408696	35408672	+	RAMPAGE_only	4	4	19	0.578403	3.531631	chr19	35408602	35408715	LTR|ERVL?|LTR89	+	chr19	35405606	35416840	LINC01531|ENST00000536898.5	+	35405606,35406584,35409285,35411161,35416478	35405681,35409151,35409472,35411282,35416840	0.789474
GM12878	chr15	51736209	51736213	51736212	-	RAMPAGE_only	8	8	16	0.487076	3.640224	chr15	51736062	51736226	SINE|MIR|MIRb	+	chr15	51723237	51738121	LYSMD2|ENST00000560491.2	-	51723237,51724789,51737839	51723649,51725121,51738121	0.812500
GM12878	chr1	183897451	183897464	183897463	+	RAMPAGE_only	4	6	13	0.395749	3.251629	chr1	183897247	183897566	SINE|Alu|AluSx	+	chr1	183805119	183928531	RGL1|ENST00000360851.3	+	183805119,183806374,183847565,183865995,183880615,183883785,183884722,183888473,183892076,183897807,183900149,183902567,183904849,183907011,183912081,183916446,183922221,183926104	183805324,183806485,183847774,183866073,183880800,183883910,183884938,183888577,183892161,183897897,183900236,183902600,183904971,183907101,183912268,183916701,183922336,183928531	0.615385
GM12878	chr1	147173173	147173226	147173225	+	High_confidence	8	8	44	1.339459	4.518833	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.954545
GM12878	chr4	42627864	42627931	42627930	-	RAMPAGE_only	8	9	34	1.035037	3.957864	chr4	42627857	42628150	LINE|L2|L2c	+	chr4	42408376	42657093	ATP8A1|ENST00000264449.14	-	42408376,42414626,42422806,42423616,42443564,42444577,42446582,42451980,42455296,42455524,42464689,42464892,42485495,42503449,42507015,42522159,42524762,42543916,42549012,42551197,42552504,42555967,42574618,42575621,42578259,42579812,42581620,42586348,42588259,42594288,42600477,42616032,42624535,42625613,42626994,42656824	42413013,42414718,42422899,42423705,42443672,42444634,42446644,42452059,42455419,42455599,42464800,42465076,42485668,42503514,42507154,42522299,42524847,42543986,42549062,42551280,42552610,42556040,42574707,42575699,42578387,42579978,42581732,42586476,42588329,42594362,42600518,42616078,42624634,42625713,42627109,42657093	0.705882
GM12878	chr7	102342150	102342151	102342150	+	RAMPAGE_only	20	20	26	0.791499	4.392747	chr7	102341963	102342347	LTR|ERVL-MaLR|MSTA	+	chr7	102363860	102426682	LOC100630923|NR_038967.1	+	102363860,102365954,102375822,102376211,102397619,102399547,102404597,102407433,102425013	102364411,102366076,102375949,102376322,102397698,102399648,102404683,102407498,102426682	0.500000
GM12878	chr4	184353618	184353714	184353675	-	High_confidence	11	11	58	1.765651	5.254196	chr4	184353593	184354081	LTR|ERVL-MaLR|MLT1G	+	chr4	184340755	184353977	LINC02363|ENST00000317596.3	-	184340755,184350088,184353312	184342053,184350278,184353977	0.896552
GM12878	chr3	190124267	190124278	190124269	-	RAMPAGE_only	11	19	69	2.100515	5.257004	chr3	190124217	190124287	LTR|ERVL|LTR40c	+	chr3	189956727	190122437	P3H2|NM_001134418.1	-	189956727,189963957,189970815,189971889,189972873,189973908,189974557,189983045,189984549,189986787,189987526,189988906,189994093,189995289,190122202	189958004,189964098,189970891,189972007,189973024,189974004,189974685,189983140,189984590,189986877,189987669,189989038,189994283,189995442,190122437	0.927536
GM12878	chr2	47695445	47695461	47695459	+	High_confidence	3	4	10	0.304423	3.169925	chr2	47695264	47695601	LTR|ERV1|MER61E	-	chr2	47695529	47709833	MSH6|ENST00000607272.2	+	47695529,47708182	47696097,47709833	0.900000
GM12878	chr7	158863386	158863410	158863388	+	RAMPAGE_only	24	43	103	3.135552	5.531923	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.922330
GM12878	chr3	139344535	139344548	139344547	+	High_confidence	370	370	826	25.145300	5.889333	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.910412
GM12878	chr15	52221962	52221978	52221962	-	RAMPAGE_only	5	5	10	0.304423	3.321928	chr15	52221863	52222235	DNA|TcMar-Tigger|MER47A	+	chr15	52192658	52295656	MYO5C|ENST00000560809.5	-	52192658,52195376,52196308,52204864,52205815,52208553,52211729,52214602,52218518,52219758,52221161,52223543,52224900,52225074,52225438,52229132,52235669,52237481,52239732,52244355,52245353,52245955,52246916,52247457,52248699,52251389,52253316,52256638,52260901,52264189,52265185,52269752,52272579,52275561,52278872,52279508,52282781,52295609	52194054,52195457,52196483,52205147,52205966,52208643,52211884,52214690,52218687,52219822,52221255,52223724,52224981,52225138,52225532,52229313,52235763,52237646,52239879,52244567,52245465,52246042,52247014,52247592,52248783,52251515,52253457,52256720,52261127,52264296,52265220,52269860,52272723,52275718,52279017,52279674,52282892,52295656	1.000000
GM12878	chr6	34295463	34295480	34295463	-	RAMPAGE_only	7	7	15	0.456634	3.521641	chr6	34295240	34295549	SINE|Alu|AluJo	+	chr6	34279678	34392674	NUDT3|ENST00000607016.1	-	34279678,34293450,34295640,34341861,34392263	34288931,34293535,34295685,34341972,34392674	0.866667
GM12878	chr16	30182795	30182830	30182797	+	High_confidence	8	11	33	1.004594	4.487893	chr16	30182593	30182835	SINE|MIR|MIRb	-	chr16	30182986	30187133	CORO1A|ENST00000561815.5	+	30182986,30185208,30186597,30186815,30187038	30183133,30185407,30186720,30186945,30187133	0.878788
GM12878	chr6	2858645	2858661	2858645	-	RAMPAGE_only	4	4	14	0.426192	3.238901	chr6	2858330	2858629	SINE|Alu|AluSg	-	chr6	2854656	2876510	SERPINB9P1|NR_033851.1	-	2854656,2876292	2855690,2876510	0.928571
GM12878	chr11	61043247	61043266	61043257	-	RAMPAGE_only	26	28	69	2.100515	5.403208	chr11	61042866	61043456	LINE|L1|L1ME2	-	chr11	61028869	61092438	MSTRG.4000.2	-	61028869,61043065,61046716,61092296	61030395,61043282,61047888,61092438	0.550725
GM12878	chr5	128082074	128082125	128082124	-	High_confidence	27	44	134	4.079262	5.106586	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127940425	128082881	MSTRG.19729.1	-	127940425,127956803,127966162,128061143,128082734	127941220,127956921,127966928,128061244,128082881	0.910448
GM12878	chr2	24887184	24887185	24887184	-	RAMPAGE_only	199	205	232	7.062602	5.723920	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24841324	24878027	ADCY3|ENST00000433852.1	-	24841324,24841555,24842253,24872569,24877921	24841386,24841667,24842384,24872719,24878027	0.896552
GM12878	chr22	23806195	23806210	23806209	+	RAMPAGE_only	3	3	8	0.243538	3.000000	chr22	23805916	23806411	LINE|RTE-X|L4_A_Mam	-	chr22	23791800	23834358	SMARCB1|ENST00000644462.1	+	23791800,23793558,23800943,23803294,23816769,23825224,23833571,23834140	23791867,23793688,23801964,23803422,23816936,23825415,23833703,23834358	0.875000
GM12878	chr16	68267936	68267937	68267936	+	RAMPAGE_only	28	29	29	0.882825	4.418157	chr16	68267617	68268452	LTR|ERVL|MER21B	+	chr16	68266601	68275001	SLC7A6|ENST00000563146.1	+	68266601,68273821,68274690	68266721,68273904,68275001	0.724138
GM12878	chr19	49675865	49675889	49675885	+	High_confidence	30	32	98	2.983341	5.296010	chr19	49675732	49676004	SINE|Alu|AluY	-	chr19	49675896	49688447	PRMT1|ENST00000532489.5	+	49675896,49676345,49680486,49681909,49682195,49683926,49684753,49684921,49686092,49686604,49688161	49676260,49676439,49680588,49682065,49682259,49684069,49684841,49685037,49686243,49686726,49688447	0.806122
GM12878	chr2	68385959	68385962	68385961	+	RAMPAGE_only	11	16	18	0.547961	3.350209	chr2	68385450	68385975	LINE|L2|L2c	+	chr2	68387941	68395717	PLEK|ENST00000474788.1	+	68387941,68393161,68394106,68395679	68388491,68393245,68394176,68395717	0.722222
GM12878	chr2	41953766	41953819	41953766	-	High_confidence	8	10	63	1.917862	5.344271	chr2	41953487	41953911	LINE|L2|L2a	+	chr2	41935367	41953803	C2orf91|NM_001242815.1	-	41935367,41947494,41952987,41953726	41938613,41947571,41953308,41953803	0.666667
GM12878	chr4	42628039	42628062	42628061	-	RAMPAGE_only	5	7	16	0.487076	3.875000	chr4	42627857	42628150	LINE|L2|L2c	+	chr4	42581681	42657093	MSTRG.18362.8	-	42581681,42586348,42588259,42616032,42624535,42625613,42626994,42656824	42581732,42586476,42600518,42616078,42624634,42625713,42627109,42657093	0.937500
GM12878	chr17	5619418	5619424	5619423	-	High_confidence	6	9	15	0.456634	3.378783	chr17	5619250	5619612	LTR|ERVL-MaLR|THE1C	-	chr17	5584016	5619424	NLRP1|ENST00000572143.1	-	5584016,5619330	5584500,5619424	0.800000
GM12878	chr2	73736756	73736757	73736756	-	High_confidence	10	10	10	0.304423	2.921928	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73731905	73737335	TPRKB|ENST00000470012.1	-	73731905,73732583,73734428,73737301	73732285,73732700,73734591,73737335	0.800000
GM12878	chr7	154928492	154928506	154928503	+	High_confidence	29	29	56	1.704766	5.393595	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.875000
GM12878	chr2	178928174	178928219	178928218	-	RAMPAGE_only	14	16	33	1.004594	4.354852	chr2	178928208	178928362	LINE|L2|L2	-	chr2	178829756	179050059	CCDC141|NM_173648.3	-	178829756,178836893,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900,178886751,178888526,178905328,178918712,178944534,178961229,178975056,178978483,179047283,179049839	178834440,178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178885092,178886871,178888668,178905501,178918907,178944651,178961483,178975165,178978675,179047406,179050059	0.606061
GM12878	chr3	127736002	127736003	127736002	-	High_confidence	37	38	40	1.217690	4.853056	chr3	127735830	127736012	LINE|CR1|L3b	-	chr3	127692116	127736357	MGLL|ENST00000398101.7	-	127692116,127694974,127710575,127721052,127722429,127735704	127692323,127695190,127710665,127721163,127722566,127736357	0.975000
GM12878	chr6	145736011	145736023	145736022	-	High_confidence	12	21	50	1.522113	4.938722	chr6	145735975	145736071	SINE|MIR|MIR3	+	chr6	145625303	145735855	EPM2A|NM_005670.3	-	145625303,145635244,145686121,145735197	145627693,145635486,145686296,145735855	0.760000
GM12878	chr19	40716704	40716753	40716721	-	High_confidence	3	3	18	0.547961	3.852169	chr19	40716589	40716687	SINE|MIR|MIRc	-	chr19	40704167	40716885	COQ8B|ENST00000601451.5	-	40704167,40710058,40714066,40714277,40714530,40716586	40705447,40710136,40714133,40714397,40714635,40716885	0.722222
GM12878	chr16	57129029	57129068	57129029	+	High_confidence	3	3	11	0.334865	2.913977	chr16	57128916	57129133	LINE|L2|L2b	-	chr16	57129051	57147966	CPNE2|ENST00000566910.1	+	57129051,57134774,57137148,57146084,57147550	57129150,57134826,57137282,57146321,57147966	1.000000
GM12878	chr1	8763899	8763934	8763899	-	RAMPAGE_only	7	7	26	0.791499	4.469670	chr1	8763658	8763955	SINE|Alu|AluSc	+	chr1	8464969	8753838	RERE|ENST00000480342.5	-	8464969,8495062,8497404,8508626,8541213,8556474,8557417,8614560,8624309,8655972,8753430	8466023,8495162,8497529,8508675,8541318,8556571,8557523,8614686,8624380,8656441,8753838	0.846154
GM12878	chr6	169654701	169654723	169654701	-	RAMPAGE_only	3	3	11	0.334865	3.121928	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169558320	169667275	WDR27|ENST00000546525.5	-	169558320,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197,169651929,169658275,169659085,169659450,169660662,169662303,169663562,169664165,169665485,169667135	169559927,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649275,169652008,169658358,169659207,169659518,169660766,169662424,169663649,169664286,169665556,169667275	0.727273
GM12878	chr20	51531224	51531261	51531224	-	RAMPAGE_only	10	10	29	0.882825	4.375222	chr20	51531074	51531194	DNA|hAT-Charlie|MER20	-	chr20	51386956	51542719	NFATC2|NM_012340.4	-	51386956,51398642,51432066,51435187,51435705,51454547,51473979,51475457,51516783,51523080,51542369	51391451,51398730,51432756,51435314,51435761,51454688,51474152,51475660,51516955,51524110,51542719	0.862069
GM12878	chr6	28335893	28335916	28335915	-	High_confidence	5	9	21	0.639287	3.826875	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.571429
GM12878	chr5	21480207	21480208	21480207	+	RAMPAGE_only	4	5	6	0.182654	2.584963	chr5	21479958	21480258	DNA|TcMar-Tigger|MER2	+	chr5	21459559	21501826	GUSBP1|ENST00000449061.2	+	21459559,21459677,21461782,21491320,21495097,21497021,21501691	21459584,21459743,21461866,21491508,21495182,21497196,21501826	0.666667
GM12878	chr6	130260668	130260763	130260703	+	High_confidence	40	45	190	5.784028	6.551762	chr6	130260610	130261018	LTR|ERV1|HERVE_a-int	+	chr6	130260416	130443061	MSTRG.21264.1	+	130260416,130440406	130260875,130443061	0.531579
GM12878	chr8	101975324	101975368	101975326	-	High_confidence	127	178	384	11.689825	6.573429	chr8	101975304	101975478	DNA|hAT-Charlie|MER5A	-	chr8	101688104	101975329	MSTRG.23369.5	-	101688104,101692790,101719251,101887140,101915808,101975259	101689406,101692896,101719648,101887227,101915858,101975329	0.664062
GM12878	chr21	45593653	45593662	45593653	+	High_confidence	244	248	404	12.298670	5.637804	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	0.957921
GM12878	chr12	31749523	31749542	31749523	+	High_confidence	2	2	9	0.273980	3.000000	chr12	31749068	31749596	LTR|ERV1|LTR8B	-	chr12	31749389	31755121	MSTRG.5217.1	+	31749389,31754760	31749585,31755121	0.777778
GM12878	chr1	88887263	88887275	88887263	-	RAMPAGE_only	3	3	11	0.334865	3.095795	chr1	88886926	88887218	SINE|Alu|AluSx1	-	chr1	88853223	88891496	GTF2B|ENST00000448623.5	-	88853223,88857372,88859881,88860139,88863980,88887260,88891482	88853346,88857487,88860011,88860286,88864114,88887367,88891496	0.909091
GM12878	chr9	114394412	114394413	114394412	-	High_confidence	13	13	16	0.487076	3.640224	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	0.937500
GM12878	chr11	58578103	58578104	58578103	+	RAMPAGE_only	6	6	6	0.182654	2.584963	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58579110	58621042	ZFP91|ENST00000316059.6	+	58579110,58584855,58609829,58610297,58610949,58611603,58612277,58612761,58614228,58616715,58617195	58579622,58584884,58610039,58610334,58611054,58611738,58612328,58612840,58614343,58616815,58621042	1.000000
GM12878	chr2	241710577	241710602	241710577	+	RAMPAGE_only	14	14	37	1.126363	4.648956	chr2	241710471	241710783	SINE|Alu|AluSp	-	chr2	241702064	241719919	ING5|ENST00000489509.1	+	241702064,241704652,241709215,241711376,241711977,241719482	241702102,241704724,241709382,241711488,241712071,241719919	0.675676
GM12878	chr15	79004549	79004596	79004595	-	RAMPAGE_only	6	7	30	0.913268	4.280226	chr15	79004565	79004625	SINE|MIR|MIR1_Amn	-	chr15	78959946	79005660	RASGRF1|NM_153815.2	-	78959946,78971865,78973302,78980619,78985006,78990188,78991690,78995739,78998095,78998718,78999742,79001661,79003801,79004716	78962236,78971934,78973420,78980699,78985204,78990273,78991794,78995800,78998208,78998825,78999913,79001787,79004175,79005660	0.900000
GM12878	chr10	102449836	102449839	102449836	+	High_confidence	82	84	170	5.175183	6.079173	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.800000
GM12878	chr15	44882414	44882437	44882414	-	High_confidence	2	2	8	0.243538	2.521641	chr15	44877921	44882678	LTR|ERV1|HUERS-P1-int	-	chr15	44827059	44882610	MSTRG.7969.5	-	44827059,44828449,44831528,44832326,44835181,44839370,44847397,44850353,44861784,44881494,44882317	44827221,44828571,44831703,44832392,44835300,44839530,44847562,44850387,44862311,44881605,44882610	0.875000
GM12878	chr7	1938555	1938558	1938555	-	High_confidence	2	2	7	0.213096	2.521641	chr7	1938357	1938711	LINE|L1|L1M5	+	chr7	1898199	1938554	MSTRG.21552.11	-	1898199,1936686,1938436	1898390,1936897,1938554	0.571429
GM12878	chr3	98732919	98732942	98732941	-	High_confidence	2	3	6	0.182654	2.584963	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98714332	98732651	ST3GAL6-AS1|NR_046683.1	-	98714332,98715375,98715649,98718418,98732425	98714498,98715521,98715777,98718521,98732651	1.000000
GM12878	chr2	88614496	88614497	88614496	-	RAMPAGE_only	4	7	7	0.213096	2.807355	chr2	88613982	88615337	LINE|L2|L2a	+	chr2	88556739	88624929	EIF2AK3|NM_001313915.1	-	88556739,88558916,88562288,88570873,88574665,88576553,88579517,88583429,88585840,88587981,88588760,88590442,88590817,88593271,88595468,88613723,88624745	88557936,88558979,88562390,88571041,88575446,88576703,88579640,88583542,88586061,88588104,88588901,88590605,88591052,88593405,88595663,88613853,88624929	0.714286
GM12878	chr3	105802367	105802374	105802367	-	RAMPAGE_only	3	3	8	0.243538	2.521641	chr3	105802328	105802435	DNA|hAT-Charlie|Charlie4z	+	chr3	105655460	105867591	CBLB|NM_001321813.1	-	105655460,105670232,105678430,105681478,105681723,105693493,105702093,105703987,105720046,105734008,105737170,105740493,105745916,105749621,105751461,105776395,105839422,105853413,105867409	105659229,105670352,105678571,105681610,105681818,105693588,105702459,105704173,105720250,105734140,105737258,105740631,105746038,105749765,105751618,105776542,105839467,105853664,105867591	0.500000
GM12878	chr10	65570441	65570466	65570465	+	High_confidence	8	8	14	0.426192	3.664498	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570501	65585801	LINC01515|ENST00000599409.5	+	65570501,65571424,65572934,65585484,65585664	65570759,65571579,65573056,65585567,65585801	0.571429
GM12878	chr11	46476345	46476346	46476345	-	RAMPAGE_only	8	8	11	0.334865	3.277613	chr11	46476251	46476466	DNA|hAT-Tip100?|MamRep1879	+	chr11	46434848	46493893	AMBRA1|ENST00000529553.1	-	46434848,46443487,46493607	46435037,46443598,46493893	0.727273
GM12878	chr4	153489743	153489772	153489771	+	High_confidence	4	4	10	0.304423	2.947703	chr4	153489485	153489775	SINE|Alu|AluSg	-	chr4	153489291	153636711	MSTRG.18911.5	+	153489291,153550072,153555786,153556965,153558257,153580825,153581406,153583189,153583563,153584834,153585457,153586208,153587741,153588889,153593798,153596257,153598589,153602151,153602541,153603302,153603801,153612251,153620755,153621682,153622897,153626146,153627604,153632717,153634191,153635431,153636300	153489934,153550141,153555910,153557082,153558368,153580903,153581560,153583248,153583672,153584931,153585611,153586379,153587811,153589007,153593871,153596385,153598732,153602338,153602727,153603452,153604430,153612400,153620880,153621849,153623083,153626225,153627687,153632838,153634280,153635571,153636711	0.600000
GM12878	chrX	48683361	48683363	48683362	+	High_confidence	701	1191	1195	36.378491	5.292911	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683614	48691427	MSTRG.24887.2	+	48683614,48683937,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683630,48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.993305
GM12878	chr17	8384046	8384058	8384046	-	High_confidence	4	4	18	0.547961	3.616875	chr17	8384033	8384050	SINE|Alu|AluSq	-	chr17	8377515	8383250	RPL26|ENST00000293842.10	-	8377515,8379795,8382142,8383156	8377692,8379936,8382315,8383250	0.500000
GM12878	chr2	230455249	230455292	230455272	+	RAMPAGE_only	12	16	44	1.339459	5.016028	chr2	230455060	230455361	SINE|Alu|AluJo	-	chr2	230449568	230494460	MSTRG.15066.10	+	230449568,230461261,230462434,230464066,230466300,230467119,230469042,230470014,230473323,230474393,230494415	230450255,230461414,230462518,230464150,230466354,230467215,230469096,230470098,230473440,230474447,230494460	0.909091
GM12878	chr19	55255899	55255919	55255899	-	High_confidence	5	5	15	0.456634	3.456565	chr19	55255671	55256025	LINE|L2|L2b	+	chr19	55245343	55255769	PPP6R1|ENST00000592242.1	-	55245343,55245491,55246876,55255674	55245402,55245678,55247109,55255769	1.000000
GM12878	chr6	34485030	34485061	34485030	+	High_confidence	59	68	267	8.128081	5.991072	chr6	34484812	34485093	LINE|L2|L2a	-	chr6	34485069	34527714	PACSIN1|ENST00000493633.5	+	34485069,34526242,34527331	34485144,34526368,34527714	0.730337
GM12878	chr6	291274	291331	291297	-	RAMPAGE_only	7	9	36	1.095921	4.513646	chr6	290962	291398	LINE|L2|L2b	-	chr6	275354	292883	MSTRG.20207.1	-	275354,285320,285914,288400	278155,285384,287823,292883	0.861111
GM12878	chr2	207662375	207662378	207662375	+	High_confidence	366	374	599	18.234909	6.087489	chr2	207662277	207662604	LTR|ERVL-MaLR|MLT1A1	+	chr2	207662374	207667024	LINC01857|ENST00000429730.1	+	207662374,207666680	207662522,207667024	0.722871
GM12878	chr1	15846844	15846845	15846844	+	RAMPAGE_only	20	20	22	0.669730	4.021928	chr1	15846831	15847128	SINE|Alu|AluSx1	+	chr1	15847863	15940455	SPEN|NM_015001.2	+	15847863,15872815,15876201,15909320,15911100,15916127,15918925,15919403,15920869,15922248,15928090,15937162,15937811,15938717,15939295	15848150,15873136,15876678,15909481,15911301,15916279,15919051,15919517,15920983,15922349,15936266,15937645,15938006,15938876,15940455	0.681818
GM12878	chr8	143558019	143558020	143558019	+	High_confidence	14	15	15	0.456634	3.467720	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.800000
GM12878	chr19	11180115	11180166	11180165	-	High_confidence	13	13	77	2.344053	5.647250	chr19	11179872	11180127	SINE|Alu|AluSz	-	chr19	11164266	11180109	MSTRG.12402.1	-	11164266,11164738,11169876,11170047,11172980,11174472,11175901,11176577,11178344,11178552,11179723	11164710,11166611,11169966,11170248,11173123,11174692,11175989,11176817,11178447,11178720,11180109	0.909091
GM12878	chr9	128683012	128683048	128683012	+	High_confidence	7	7	22	0.669730	4.186704	chr9	128683003	128683161	SINE|Alu|AluSx1	-	chr9	128683423	128693998	MSTRG.24449.1	+	128683423,128683779,128691169,128691857,128692661,128692867,128693637,128693895	128683446,128684007,128691227,128692000,128692765,128692981,128693808,128693998	1.000000
GM12878	chr12	31749381	31749397	31749396	+	High_confidence	26	26	78	2.374496	4.508436	chr12	31749068	31749596	LTR|ERV1|LTR8B	-	chr12	31749389	31755121	MSTRG.5217.1	+	31749389,31754760	31749585,31755121	0.833333
GM12878	chr21	36104837	36104843	36104842	+	High_confidence	2	2	7	0.213096	2.521641	chr21	36104755	36109248	LTR|ERV1|HERVIP10FH-int	+	chr21	36104880	36109690	AP000688.2|ENST00000422473.1	+	36104880,36107597	36105123,36109690	0.714286
GM12878	chr1	93181128	93181148	93181147	-	RAMPAGE_only	10	10	28	0.852383	3.726474	chr1	93181034	93181174	SINE|Alu|FLAM_C	+	chr1	93149741	93186010	MSTRG.1191.1	-	93149741,93156299,93160128,93180053,93185339,93185928	93154888,93156483,93160226,93181149,93185385,93186010	1.000000
GM12878	chr1	174220540	174220631	174220540	+	High_confidence	8	9	50	1.522113	4.636566	chr1	174220384	174220694	SINE|Alu|AluSz	+	chr1	174220711	174231245	RABGAP1L|ENST00000487987.1	+	174220711,174231144	174221164,174231245	0.980000
GM12878	chr5	96958267	96958276	96958275	+	High_confidence	14	22	51	1.552555	4.450415	chr5	96958190	96958348	DNA|TcMar-Tigger|Tigger13a	-	chr5	96958450	97029036	LNPEP|ENST00000395770.3	+	96958450,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029036	1.000000
GM12878	chr12	110688630	110688631	110688630	-	High_confidence	47	47	55	1.674324	4.377665	chr12	110688571	110688794	SINE|MIR|MIRc	+	chr12	110648796	110688709	HVCN1|ENST00000356742.9	-	110648796,110650167,110651216,110655233,110661163,110683224,110687974	110649475,110650280,110651448,110655338,110661448,110683264,110688709	0.909091
GM12878	chr10	48685404	48685485	48685463	+	High_confidence	8	8	52	1.582997	4.846471	chr10	48685477	48685570	SINE|MIR|MIR1_Amn	+	chr10	48685472	48982956	WDFY4|NM_020945.1	+	48685472,48709715,48720010,48721260,48723432,48725880,48727469,48729431,48731109,48733930,48735879,48742967,48760346,48774457,48775711,48776749,48777418,48778610,48779940,48786638,48788529,48789873,48790726,48796297,48803285,48805259,48806003,48807858,48810529,48811538,48813956,48817244,48820233,48821061,48822379,48826670,48828777,48830699,48832572,48867264,48873490,48875088,48877032,48890578,48897453,48900220,48901800,48941805,48943329,48946039,48946859,48957128,48959721,48963841,48966525,48969063,48970130,48974861,48976796,48978308,48981366,48982508	48685532,48709966,48720125,48721367,48723567,48726070,48727659,48729589,48731562,48734035,48736070,48743548,48760440,48774672,48775806,48776984,48777495,48778832,48780119,48786870,48788675,48789985,48790917,48796450,48803359,48805421,48806095,48807958,48810735,48811708,48814082,48817409,48820437,48821176,48822537,48826909,48828896,48830885,48832709,48867342,48873697,48875140,48877199,48890727,48897574,48900306,48901863,48941848,48943449,48946157,48946969,48957282,48959813,48964054,48966673,48969248,48970289,48975041,48976979,48978393,48981478,48982956	0.730769
GM12878	chr8	140513536	140513543	140513542	+	High_confidence	20	21	57	1.735208	4.841147	chr8	140513428	140513746	SINE|Alu|AluYm1	-	chr8	140514293	140515541	CHRAC1|ENST00000523569.1	+	140514293,140515125	140514495,140515541	0.701754
GM12878	chr2	136957212	136957228	136957212	+	RAMPAGE_only	3	3	10	0.304423	3.169925	chr2	136957217	136957448	LTR|ERVL-MaLR|MLT1K	+	chr2	136990891	137677717	THSD7B|ENST00000413152.3	+	136990891,137056419,137094872,137115123,137160212,137170740,137231043,137232898,137242456,137272532,137275922,137405612,137411608,137450844,137563212,137563217,137572405,137616174,137618391,137620608,137642487,137655500,137656795,137657064,137659663,137663382,137667773,137676523	136990937,137057230,137095121,137115293,137160368,137170938,137231235,137233133,137242572,137272662,137276026,137405807,137411872,137451024,137563214,137563354,137572556,137616316,137618507,137620726,137642633,137655660,137656969,137657160,137659746,137663575,137667861,137677717	0.600000
GM12878	chr22	37484534	37484568	37484567	-	RAMPAGE_only	36	41	94	2.861572	5.758200	chr22	37484462	37484588	SINE|MIR|MIRc	+	chr22	37469067	37486379	MSTRG.16461.3	-	37469067,37469941,37472442,37474511,37476895,37479344,37480196,37480720,37485922	37469312,37470029,37472528,37474677,37476981,37479498,37480299,37480769,37486379	0.510638
GM12878	chr12	92557281	92557420	92557364	+	High_confidence	202	210	1201	36.561145	7.527242	chr12	92557054	92557684	LINE|L2|L2	-	chr12	92556980	92586225	MSTRG.5756.1	+	92556980,92582998	92557598,92586225	0.628643
GM12878	chr3	15657883	15657884	15657883	+	RAMPAGE_only	10	10	10	0.304423	2.721928	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
GM12878	chrX	47192225	47192240	47192225	+	High_confidence	6	7	20	0.608845	4.247928	chrX	47192030	47192254	SINE|MIR|MIR	-	chrX	47191422	47199613	UBA1|ENST00000427561.5	+	47191422,47198308,47198802,47199047,47199208,47199479	47191567,47198355,47198919,47199106,47199377,47199613	0.800000
GM12878	chrX	119641417	119641418	119641417	-	RAMPAGE_only	4	4	7	0.213096	2.584963	chrX	119641342	119641499	LINE|L2|L2c	-	chrX	119628815	119633502	SEPT6|ENST00000481072.1	-	119628815,119633359	119629508,119633502	0.571429
GM12878	chr19	16075424	16075431	16075424	+	High_confidence	2	2	9	0.273980	3.000000	chr19	16075326	16075536	DNA|hAT-Charlie|Charlie16a	+	chr19	16075674	16102948	TPM4|ENST00000647464.1	+	16075674,16076046,16081912,16086422,16088026,16089044,16093535,16093683,16101263	16075875,16076172,16082046,16086540,16088097,16089120,16093598,16093753,16102948	0.888889
GM12878	chr8	143039246	143039298	143039266	+	High_confidence	23	26	77	2.344053	5.055303	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.922078
GM12878	chr8	48518081	48518082	48518081	-	High_confidence	60	62	77	2.344053	5.171932	chr8	48517923	48518278	LTR|ERVL-MaLR|THE1A	-	chr8	48515851	48517089	AC026904.1|ENST00000521359.1	-	48515851,48517057	48516356,48517089	0.922078
GM12878	chr1	22026338	22026347	22026338	+	High_confidence	3	3	12	0.365307	3.251629	chr1	22026265	22026574	SINE|Alu|AluSx	-	chr1	22025552	22030617	LINC00339|ENST00000452322.2	+	22025552,22027413,22030279	22025639,22028379,22030617	0.666667
GM12878	chr11	67486096	67486110	67486096	+	RAMPAGE_only	5	6	22	0.669730	4.011365	chr11	67485980	67486421	LTR|ERV1|LTR1A2	-	chr11	67483515	67491108	AIP|NM_001302959.1	+	67483515,67487005,67489266,67490037,67490315,67490787	67483710,67487185,67489455,67490214,67490457,67491108	0.727273
GM12878	chr8	98734057	98734093	98734092	-	RAMPAGE_only	7	7	20	0.608845	3.584184	chr8	98733861	98734251	LTR|ERVL-MaLR|MSTA	-	chr8	98595329	98825666	STK3|ENST00000424861.6	-	98595329,98638459,98706466,98707146,98721073,98722742,98749275,98767242,98774738,98825514	98596169,98638560,98706634,98707311,98721160,98722969,98749390,98767371,98774819,98825666	0.900000
GM12878	chr5	140534330	140534352	140534340	+	RAMPAGE_only	11	12	41	1.248132	4.201693	chr5	140534110	140534410	SINE|Alu|AluY	+	chr5	140537048	140538262	ANKHD1|ENST00000495578.1	+	140537048,140538085	140537589,140538262	0.585366
GM12878	chr10	34596471	34596498	34596497	-	RAMPAGE_only	9	9	17	0.517518	3.454822	chr10	34596328	34596696	LTR|ERVL-MaLR|THE1C	-	chr10	34312263	34815280	MSTRG.2767.12	-	34312263,34317106,34331116,34336198,34337274,34341626,34347964,34359146,34360070,34374873,34377966,34382539,34384128,34399329,34401825,34470084,34516978,34696317,34814875	34312382,34317338,34331344,34336243,34337426,34341816,34348115,34359317,34360259,34375002,34378106,34382922,34384254,34399413,34401917,34470263,34517159,34696419,34815280	0.705882
GM12878	chr20	63981385	63981400	63981399	+	High_confidence	14	14	44	1.339459	4.735362	chr20	63981444	63981612	SINE|MIR|MIRb	+	chr20	63981134	64033100	PRPF6|ENST00000266079.4	+	63981134,63983046,63984906,63993406,63994915,63995326,63999044,63999602,64001076,64010199,64011284,64016722,64022756,64024554,64025938,64026981,64027602,64028477,64029376,64031917,64032840	63981316,63983215,63985025,63993485,63995092,63995482,63999139,63999759,64001239,64010318,64011503,64016845,64022878,64024693,64026058,64027158,64027736,64028569,64029491,64032044,64033100	0.636364
GM12878	chr2	58044908	58044946	58044908	+	RAMPAGE_only	2	2	12	0.365307	3.459432	chr2	58044836	58045052	DNA|hAT-Charlie|MER20	+	chr2	58046641	58159920	VRK2|NM_001130482.2	+	58046641,58048880,58084088,58084880,58086338,58088340,58089630,58123100,58131807,58135140,58139665,58146315,58159348	58046821,58048967,58084138,58084950,58086426,58088446,58089723,58123233,58131928,58135199,58139832,58146474,58159920	0.500000
GM12878	chr16	12539346	12539372	12539371	+	RAMPAGE_only	16	16	63	1.917862	5.338158	chr16	12539107	12540236	LINE|L1|L1MD3	-	chr16	11976737	12574289	SNX29|ENST00000566228.5	+	11976737,11999296,12002990,12027319,12042896,12046383,12048371,12051846,12061527,12069056,12078832,12126632,12129629,12199600,12277932,12356162,12398445,12403447,12477718,12524701,12568505	11976813,11999358,12003043,12027444,12043077,12046454,12048620,12052222,12061646,12069132,12078915,12126696,12129758,12199683,12278036,12356279,12398501,12403529,12477859,12524841,12574289	0.920635
GM12878	chr21	41836876	41836888	41836887	-	High_confidence	4	4	10	0.304423	2.947703	chr21	41836880	41837100	LINE|RTE-X|L4_B_Mam	+	chr21	41825976	41836894	PRDM15|ENST00000489661.5	-	41825976,41828165,41835436,41836112,41836467	41826054,41828333,41835524,41836207,41836894	0.900000
GM12878	chr12	57478293	57478362	57478328	-	High_confidence	8	10	35	1.065479	4.057575	chr12	57478195	57478528	LINE|L2|L2a	+	chr12	57476077	57478337	ARHGAP9|ENST00000548148.5	-	57476077,57476363,57476589,57477155,57477458,57478277	57476166,57476454,57476963,57477269,57477680,57478337	0.942857
GM12878	chr12	6444527	6444528	6444527	+	High_confidence	4	4	7	0.213096	2.807355	chr12	6444316	6444548	DNA|TcMar-Tigger|MER46C	+	chr12	6444866	6451718	CD27|ENST00000266557.3	+	6444866,6445423,6450172,6450540,6450894,6451267	6445231,6445555,6450352,6450630,6451014,6451718	1.000000
GM12878	chr2	230925241	230925265	230925264	-	High_confidence	175	195	643	19.574368	6.477362	chr2	230925193	230925329	SINE|MIR|MIR3	+	chr2	230907317	230925226	GPR55|ENST00000444078.5	-	230907317,230909621,230925167	230908310,230911096,230925226	0.741835
GM12878	chr16	56491270	56491271	56491270	+	RAMPAGE_only	29	29	29	0.882825	3.728502	chr16	56491167	56491605	LTR|ERVL-MaLR|MSTB2	+	chr16	57357894	57366190	MSTRG.9490.1	+	57357894,57358786,57360436,57363503	57358148,57358889,57360560,57366190	1.000000
GM12878	chr15	65517249	65517274	65517250	-	High_confidence	4	6	27	0.821941	4.133661	chr15	65517021	65517261	SINE|MIR|MIRc	+	chr15	65442462	65517273	DPP8|ENST00000341861.9	-	65442462,65450998,65451959,65454262,65456224,65463760,65466677,65467070,65474208,65478879,65480221,65481514,65485098,65487689,65490188,65497863,65500605,65507242,65512294,65515655	65447006,65451110,65452102,65454415,65456371,65463906,65466813,65467223,65474288,65479039,65480399,65481615,65485160,65487818,65490299,65498032,65500779,65507355,65512564,65517273	0.925926
GM12878	chr1	236163668	236163669	236163668	+	RAMPAGE_only	22	22	24	0.730614	3.697846	chr1	236163473	236163830	LTR|ERVL-MaLR|THE1A	+	chr1	236168700	236208482	GPR137B|ENST00000454895.2	+	236168700,236178413,236179878,236183777,236205125,236208060	236168755,236178636,236180028,236183906,236205250,236208482	0.750000
GM12878	chr16	57542950	57542964	57542950	+	High_confidence	3	3	9	0.273980	2.641604	chr16	57542934	57543033	SINE|MIR|MIRb	+	chr16	57542688	57577195	ADGRG5|ENST00000340339.4	+	57542688,57562055,57562383,57563090,57563847,57565033,57566598,57567469,57567855,57570417,57574814,57575437	57543173,57562157,57562459,57563247,57563979,57565150,57566751,57567591,57568124,57570535,57575092,57577195	1.000000
GM12878	chr10	88887844	88887845	88887844	+	RAMPAGE_only	6	6	8	0.243538	2.500000	chr10	88887817	88887888	DNA|hAT-Charlie|MER5A	-	chr10	88880186	88923502	STAMBPL1|NM_020799.3	+	88880186,88901655,88905442,88908701,88910915,88913100,88914533,88916679,88921282,88922336,88923167	88880638,88901738,88905660,88908777,88911011,88913458,88914658,88916817,88921395,88922436,88923502	0.875000
GM12878	chr14	100066390	100066402	100066400	+	High_confidence	4	6	13	0.395749	3.584963	chr14	100066222	100066467	SINE|MIR|MIRc	-	chr14	100066436	100128581	EVL|ENST00000557153.5	+	100066436,100084686,100097480,100123538,100126706,100128518	100066487,100084855,100097658,100123602,100126771,100128581	0.615385
GM12878	chr11	73087932	73087933	73087932	-	RAMPAGE_only	4	6	7	0.213096	2.584963	chr11	73087911	73088170	SINE|Alu|AluJr4	-	chr11	72842953	73140061	FCHSD2|ENST00000409853.5	-	72842953,72843448,72849754,72867864,72887469,72889828,72902542,72921827,72984087,72985061,72988963,73000989,73015808,73077617,73083694,73140030	72843328,72843532,72849889,72868026,72887574,72889945,72902638,72921950,72984216,72985116,72989097,73001134,73015885,73077670,73083740,73140061	0.571429
GM12878	chr10	89888921	89888962	89888929	+	RAMPAGE_only	7	8	16	0.487076	3.323231	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.750000
GM12878	chr11	72111411	72111441	72111411	-	High_confidence	4	5	17	0.517518	3.500000	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.941176
GM12878	chr20	15985830	15985884	15985875	-	High_confidence	36	37	94	2.861572	5.805746	chr20	15985767	15986246	LTR|ERV1|LTR2B	-	chr20	15892332	15985882	LOC613266|NR_130924.1	-	15892332,15985502	15894277,15985882	0.691489
GM12878	chr7	36951252	36951314	36951284	-	RAMPAGE_only	12	13	74	2.252727	4.886046	chr7	36950903	36951478	LINE|L2|L2b	+	chr7	36854461	36985060	ELMO1|ENST00000396040.6	-	36854461,36861658,36870392,36878009,36887559,36894853,36984914	36855751,36861736,36870475,36878117,36887672,36895017,36985060	0.689189
GM12878	chr1	174204831	174204836	174204833	+	RAMPAGE_only	118	199	363	11.050537	6.116440	chr1	174204635	174205029	LTR|ERVL-MaLR|MSTA	+	chr1	174220711	174231245	RABGAP1L|ENST00000487987.1	+	174220711,174231144	174221164,174231245	0.796143
GM12878	chr1	54413492	54413493	54413492	-	High_confidence	8	8	10	0.304423	2.947703	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54243236	54413479	SSBP3|ENST00000525990.1	-	54243236,54251615,54251793,54257126,54281437,54401860,54404575,54404857,54413355	54243299,54251692,54251860,54257186,54281527,54401945,54404637,54404930,54413479	0.600000
GM12878	chr3	106255898	106255900	106255899	-	High_confidence	3	5	7	0.213096	2.807355	chr3	106253080	106255986	LINE|L1|L1PA16	+	chr3	106246984	106256075	MSTRG.17407.1	-	106246984	106256075	0.571429
GM12878	chr19	9323716	9323770	9323716	+	High_confidence	2	2	12	0.365307	3.418296	chr19	9323408	9324010	LTR|ERV1|MER51A	+	chr19	9323771	9343845	ZNF559|NM_001202411.1	+	9323771,9324694,9333014,9338493,9339192,9341101,9341616	9324228,9324780,9333113,9338582,9339319,9341184,9343845	1.000000
GM12878	chr3	160485757	160485798	160485757	-	High_confidence	15	15	96	2.922456	3.577048	chr3	160485577	160485878	SINE|Alu|AluSx1	+	chr3	160439000	160485773	TRIM59|ENST00000468542.1	-	160439000,160485358	160439186,160485773	0.958333
GM12878	chr11	78139051	78139069	78139066	-	High_confidence	5	6	17	0.517518	3.327820	chr11	78138792	78139208	LINE|L2|L2b	+	chr11	78121136	78139258	ALG8|ENST00000530910.5	-	78121136,78124020,78127357,78138709	78121174,78124214,78127436,78139258	0.882353
GM12878	chr2	196377491	196377493	196377492	-	RAMPAGE_only	6	9	12	0.365307	3.418296	chr2	196377333	196377688	LTR|ERVL-MaLR|THE1B	-	chr2	196199250	196362222	HECW2|ENST00000647236.1	-	196199250,196215864,196217007,196220038,196220794,196222210,196225771,196228101,196240448,196242083,196253919,196257822,196271192,196274020,196278527,196292564,196306487,196307129,196307934,196317273,196318551,196322477,196324979,196329574,196334423,196343656,196361811	196201388,196215977,196217093,196220153,196220941,196222340,196225870,196228254,196240562,196242204,196254029,196257906,196271289,196274123,196278662,196292750,196306612,196307233,196308085,196317369,196319904,196322620,196325078,196329650,196334518,196343764,196362222	0.583333
GM12878	chr7	120359886	120359888	120359887	+	RAMPAGE_only	11	20	20	0.608845	3.584184	chr7	120359693	120360059	LTR|ERVL-MaLR|THE1D	+	chr7	120365245	120750331	MSTRG.22384.3	+	120365245,120732902,120741533,120742509,120745779,120747680	120395948,120733065,120741629,120742602,120746027,120750331	0.850000
GM12878	chr16	58243764	58243765	58243764	+	RAMPAGE_only	6	6	9	0.273980	2.750000	chr16	58243665	58244184	LTR|ERV1|LTR38	-	chr16	58249935	58283836	CCDC113|ENST00000219299.8	+	58249935,58252726,58253997,58258367,58259853,58262384,58267478,58278481,58279690	58250115,58252853,58254159,58258523,58259934,58262540,58267586,58278637,58283836	0.888889
GM12878	chr2	230455494	230455539	230455538	+	RAMPAGE_only	81	83	130	3.957493	6.007045	chr2	230455361	230457826	LINE|L1|L1MA8	-	chr2	230449568	230494460	MSTRG.15066.10	+	230449568,230461261,230462434,230464066,230466300,230467119,230469042,230470014,230473323,230474393,230494415	230450255,230461414,230462518,230464150,230466354,230467215,230469096,230470098,230473440,230474447,230494460	0.915385
GM12878	chr16	80693058	80693084	80693058	-	RAMPAGE_only	8	8	24	0.730614	3.788755	chr16	80692849	80693301	LINE|L1|L1ME1	+	chr16	80684603	80735133	CDYL2|ENST00000562753.1	-	80684603,80735102	80685129,80735133	0.833333
GM12878	chr15	65300634	65300635	65300634	-	High_confidence	278	280	282	8.584715	4.793300	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65266576	65300618	PARP16|ENST00000558873.1	-	65266576,65270934,65282546,65300196	65266768,65271072,65282632,65300618	0.943262
GM12878	chr21	29122127	29122131	29122130	+	High_confidence	6	6	12	0.365307	2.845351	chr21	29122110	29122884	LTR|ERV1|LTR1E	-	chr21	29122054	29175889	MSTRG.15875.11	+	29122054,29130794,29133305,29149188,29159940,29174711	29122213,29130923,29133414,29149250,29160056,29175889	0.916667
GM12878	chr1	36023667	36023683	36023667	+	RAMPAGE_only	6	6	15	0.456634	3.640224	chr1	36023368	36023764	LTR|ERV1|MER57B2	-	chr1	35931257	36056462	AGO3|ENST00000246314.10	+	35931257,35945691,35972023,36004340,36008689,36008896,36009474,36013629,36013914,36027113,36034173,36036176,36039789,36040306,36043446,36054945,36055636	35931445,35945863,35972232,36004475,36008777,36009044,36009594,36013752,36014048,36027298,36034333,36036267,36039984,36040441,36043548,36055145,36056462	0.933333
GM12878	chr2	95121593	95121604	95121593	-	High_confidence	3	3	7	0.213096	2.584963	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.571429
GM12878	chr12	14956290	14956403	14956311	-	RAMPAGE_only	29	29	131	3.987935	4.996821	chr12	14956213	14956378	SINE|MIR|MIR3	+	chr12	14942014	14961266	ARHGDIB|NM_001321421.1	-	14942014,14944775,14947872,14949801,14950531,14961153	14942721,14944839,14947949,14949885,14950724,14961266	0.954198
GM12878	chr11	108726699	108726728	108726699	+	RAMPAGE_only	17	17	52	1.582997	5.416692	chr11	108724877	108727148	LINE|L1|L1ME1	-	chr11	108767313	108841476	DDX10|ENST00000534439.5	+	108767313,108767936,108838445,108841314	108767404,108768001,108838565,108841476	0.653846
GM12878	chr12	26711677	26711690	26711677	-	RAMPAGE_only	6	7	14	0.426192	3.182006	chr12	26711595	26711872	LINE|L2|L2a	-	chr12	26335336	26833198	ITPR2|NM_002223.3	-	26335336,26340166,26387433,26398875,26400127,26411319,26415302,26419048,26427912,26436220,26439126,26443542,26475295,26476911,26481130,26483697,26486103,26487067,26494152,26495151,26550246,26556232,26561761,26578712,26580026,26595464,26596882,26599144,26599986,26602369,26602616,26621122,26622239,26624298,26628032,26631865,26653975,26655707,26656296,26657706,26658010,26659112,26663684,26665909,26681873,26682573,26686480,26695605,26711172,26715298,26715751,26716143,26722396,26724655,26725649,26790156,26832689	26339483,26340328,26387594,26399041,26400258,26411412,26415498,26419213,26428088,26436346,26439319,26443650,26475418,26477007,26481241,26483898,26486360,26487251,26494340,26495260,26550355,26556375,26561952,26578833,26580155,26595590,26597134,26599345,26600109,26602495,26602706,26621296,26622405,26624356,26628162,26632059,26654126,26655852,26656548,26657892,26658130,26659285,26663846,26666051,26682034,26682673,26686632,26695650,26711268,26715445,26715835,26716242,26722555,26724742,26725765,26790227,26833198	1.000000
GM12878	chr1	161184994	161185018	161185009	-	RAMPAGE_only	7	12	29	0.882825	4.651084	chr1	161184736	161185044	SINE|Alu|AluSz6	+	chr1	161184307	161199056	ADAMTS4|ENST00000367996.5	-	161184307,161192064,161193212,161193639,161193934,161195464,161196170,161196556,161197994	161191564,161192240,161193388,161193826,161194221,161195635,161196303,161196880,161199056	0.517241
GM12878	chr13	22883920	22883921	22883920	+	High_confidence	505	512	630	19.178619	7.070818	chr13	22883559	22884029	LTR|ERV1|LTR2B	+	chr13	22883930	22910377	MSTRG.6291.2	+	22883930,22892610	22884295,22910377	0.531746
GM12878	chr1	1655445	1655449	1655448	-	RAMPAGE_only	13	13	27	0.821941	4.085055	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	0.962963
GM12878	chr14	35294421	35294443	35294442	+	RAMPAGE_only	13	14	23	0.700172	3.630413	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	0.869565
GM12878	chr18	69945890	69945894	69945890	-	High_confidence	700	893	1193	36.317607	6.772968	chr18	69945718	69946031	LTR|ERVL-MaLR|THE1B	-	chr18	69853274	69946118	MSTRG.12014.2	-	69853274,69867356,69873143,69895700,69945802	69864439,69867411,69873246,69896045,69946118	0.908634
GM12878	chr1	23177528	23177531	23177530	-	High_confidence	16	21	26	0.791499	4.243856	chr1	23177412	23177535	SINE|MIR|MIRb	+	chr1	23084029	23177808	LUZP1|ENST00000302291.8	-	23084029,23091189,23109021,23168765,23177490	23089053,23094380,23109127,23169024,23177808	0.846154
GM12878	chr6	88734689	88734721	88734701	-	RAMPAGE_only	80	93	185	5.631817	4.837083	chr6	88734667	88735030	DNA|TcMar-Tigger|MER47A	+	chr6	88612718	88963409	RNGTT|ENST00000369475.7	-	88612718,88614271,88678352,88769773,88844356,88849754,88853628,88890494,88891805,88904714,88906364,88928984,88929163,88941070,88963345	88612882,88614395,88678419,88769874,88844521,88849826,88853764,88890596,88891915,88904955,88906440,88929073,88929267,88941180,88963409	0.902703
GM12878	chr1	45522479	45522499	45522498	-	High_confidence	3	3	6	0.182654	2.584963	chr1	45522400	45522751	LTR|ERV1|LTR34	+	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.833333
GM12878	chr7	8176312	8176422	8176327	-	RAMPAGE_only	17	19	82	2.496265	5.461833	chr7	8176157	8176437	LINE|L2|L2b	+	chr7	8141764	8157764	ICA1|ENST00000470696.1	-	8141764,8143874,8157115	8141817,8143972,8157764	0.707317
GM12878	chr5	173787894	173787895	173787894	-	High_confidence	4	5	7	0.213096	2.521641	chr5	173787769	173787960	SINE|MIR|MIRb	+	chr5	173786789	173788413	LINC01485|ENST00000520324.5	-	173786789,173787688,173788362	173787247,173787745,173788413	0.571429
GM12878	chr2	68385810	68385860	68385810	+	RAMPAGE_only	4	5	22	0.669730	4.186704	chr2	68385450	68385975	LINE|L2|L2c	+	chr2	68387941	68395717	PLEK|ENST00000474788.1	+	68387941,68393161,68394106,68395679	68388491,68393245,68394176,68395717	0.636364
GM12878	chr20	31692096	31692104	31692096	-	RAMPAGE_only	4	5	8	0.243538	2.521641	chr20	31692031	31692220	DNA|hAT-Charlie|MER5A	+	chr20	31664451	31722330	BCL2L1|NR_134257.1	-	31664451,31666990,31721654	31666086,31667147,31722330	0.750000
GM12878	chr7	42960878	42960897	42960894	-	RAMPAGE_only	5	7	16	0.487076	3.323231	chr7	42960777	42961015	LTR|ERV1|HERV35I-int	-	chr7	42954134	42963343	AC005537.1|ENST00000588324.1	-	42954134,42955376,42955954,42959928,42961338,42962967	42954485,42955457,42956132,42959990,42961528,42963343	0.750000
GM12878	chr17	30968761	30968789	30968780	+	High_confidence	17	29	96	2.922456	4.153729	chr17	30968749	30968853	LINE|L2|L2	-	chr17	30968784	30970307	RNF135|ENST00000582674.1	+	30968784,30970277	30969335,30970307	0.875000
GM12878	chr19	54617128	54617148	54617143	+	High_confidence	216	318	1062	32.329672	7.564145	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637076	MSTRG.13407.3	+	54617157,54630516,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637076	0.838983
GM12878	chr1	174874417	174874439	174874418	+	High_confidence	122	152	343	10.441692	6.770126	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.816327
GM12878	chr18	70195265	70195301	70195300	-	RAMPAGE_only	9	12	49	1.491670	5.109508	chr18	70195024	70195460	LINE|L2|L2a	+	chr18	70003803	70197686	RTTN|ENST00000583043.5	-	70003803,70005197,70006380,70017406,70020614,70024721,70028723,70030011,70030875,70047970,70051410,70054130,70057741,70059849,70065828,70073905,70075351,70086612,70087988,70092109,70092675,70109497,70114444,70121555,70127501,70128357,70134472,70135183,70139598,70142287,70145611,70148900,70149970,70150607,70166061,70166918,70168854,70176674,70188107,70190537,70193287,70196500,70197623	70004236,70005267,70006484,70017643,70020817,70024848,70028801,70030109,70030981,70048188,70051548,70054284,70057832,70060042,70065922,70073994,70075541,70086684,70088147,70092220,70092804,70109717,70114599,70121700,70127741,70128546,70134541,70135280,70139716,70142387,70145783,70149037,70150087,70150733,70166188,70167031,70169067,70176845,70188223,70190719,70193453,70196648,70197686	0.612245
GM12878	chr16	81842076	81842096	81842076	+	High_confidence	6	6	24	0.730614	3.938722	chr16	81842021	81842185	SINE|MIR|MIRb	-	chr16	81842719	81869277	PLCG2|ENST00000569523.1	+	81842719,81852049,81854443,81858262,81859115,81869213	81842867,81852126,81854587,81858356,81859163,81869277	0.833333
GM12878	chr19	48270898	48270942	48270914	+	High_confidence	13	16	78	2.374496	5.516469	chr19	48270796	48271084	SINE|Alu|AluYc	+	chr19	48271055	48287070	ZNF114|ENST00000600687.5	+	48271055,48271286,48279730,48282370,48285760	48271119,48271449,48279808,48282497,48287070	0.564103
GM12878	chr8	123251134	123251143	123251134	+	High_confidence	3	4	8	0.243538	2.500000	chr8	123251043	123251381	LTR|ERVL-MaLR|MSTA	+	chr8	123251161	123256201	MSTRG.23470.1	+	123251161,123255837	123251299,123256201	0.875000
GM12878	chr17	4143196	4143215	4143199	+	High_confidence	186	200	536	16.317047	6.196394	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.986940
GM12878	chr4	47493744	47493777	47493776	+	RAMPAGE_only	2	2	6	0.182654	2.584963	chr4	47493672	47493882	DNA|hAT-Charlie|MER5A	+	chr4	47485392	47593486	ATP10D|NM_020453.3	+	47485392,47512503,47515475,47523011,47525556,47535508,47535901,47536436,47536685,47546623,47554725,47557663,47558922,47560948,47563580,47568836,47572153,47572871,47576772,47580397,47581959,47587018,47591041	47485519,47512830,47515670,47523216,47525642,47535615,47536033,47536564,47536938,47546862,47554914,47558273,47559029,47561075,47563765,47569146,47572230,47572997,47576973,47580478,47582064,47587206,47593486	1.000000
GM12878	chr15	67851447	67851456	67851453	+	RAMPAGE_only	7	7	44	1.339459	4.225689	chr15	67851260	67851613	LTR|ERVL-MaLR|MSTA	+	chr15	67833081	67873866	AC009292.2|ENST00000560577.1	+	67833081,67873696	67833257,67873866	0.522727
GM12878	chr17	59107112	59107165	59107115	+	High_confidence	8	8	82	2.496265	5.057451	chr17	59107089	59107281	DNA|hAT-Charlie|MER5A	-	chr17	59106597	59118267	AC099850.1|ENST00000451775.1	+	59106597,59117923	59107591,59118267	0.780488
GM12878	chr16	13337842	13337843	13337842	+	RAMPAGE_only	13	13	17	0.517518	3.750000	chr16	13337657	13338036	LTR|ERVL-MaLR|MSTA	+	chr16	13246315	13562918	U91319.1|ENST00000571619.5	+	13246315,13258332,13350179,13474209,13562706	13246390,13258435,13350421,13474341,13562918	0.529412
GM12878	chr16	4355592	4355593	4355592	-	High_confidence	631	642	643	19.574368	5.347499	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.939347
GM12878	chr3	13016335	13016347	13016346	-	High_confidence	3	3	12	0.365307	3.251629	chr3	13016330	13016711	LINE|L2|L2a	+	chr3	12901362	13016519	MSTRG.16805.7	-	12901362,12908348,12909272,12911628,12913427,12915103,12915593,12920429,12922119,12924580,12935447,12941570,13015577	12901522,12908525,12909434,12911728,12913553,12915133,12915733,12920596,12922242,12924742,12936697,12941865,13016519	0.916667
GM12878	chr13	37000260	37000261	37000260	-	High_confidence	5	6	7	0.213096	2.807355	chr13	37000063	37000363	SINE|Alu|AluY	+	chr13	36985648	37000261	ALG5|ENST00000496689.1	-	36985648,36989483,36993603,36995424,36999931	36985740,36989576,36993672,36995596,37000261	0.714286
GM12878	chr13	21172970	21172971	21172970	-	RAMPAGE_only	11	11	15	0.456634	3.521641	chr13	21172753	21173076	DNA|TcMar-Tigger|Tigger3a	+	chr13	21153594	21176547	SKA3|ENST00000400018.7	-	21153594,21157921,21159901,21161789,21167987,21172338,21172619,21176374	21155150,21158125,21159987,21161875,21168399,21172504,21172681,21176547	0.933333
GM12878	chr3	46926963	46927006	46927005	-	RAMPAGE_only	10	14	31	0.943710	4.640224	chr3	46926957	46927003	SINE|MIR|MIRb	-	chr3	46921729	46976501	CCDC12|NR_102269.1	-	46921729,46922235,46923328,46923606,46925455,46940997,46976352	46922139,46922312,46923363,46923668,46925535,46941065,46976501	0.612903
GM12878	chr12	643627	643636	643627	-	High_confidence	95	128	246	7.488794	5.944856	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.719512
GM12878	chr6	36678094	36678099	36678094	+	High_confidence	24	24	38	1.156806	4.659387	chr6	36678065	36678145	SINE|MIR|MIR3	+	chr6	36678657	36687339	CDKN1A|ENST00000244741.9	+	36678657,36684096,36685750	36678798,36684546,36687339	0.736842
GM12878	chr11	9716964	9717014	9716964	+	RAMPAGE_only	8	9	31	0.943710	3.999047	chr11	9716634	9717133	LINE|L2|L2	-	chr11	9720065	9738259	SWAP70|ENST00000534662.1	+	9720065,9724657,9728052,9729342,9732528,9738212	9720483,9724885,9728199,9729451,9732710,9738259	1.000000
GM12878	chr14	50047511	50047512	50047511	-	RAMPAGE_only	6	6	9	0.273980	2.503258	chr14	50047179	50047651	LINE|L2|L2a	-	chr14	50037594	50041229	LINC01588|ENST00000554129.1	-	50037594,50039391,50040669	50039257,50039469,50041229	1.000000
GM12878	chr5	110753024	110753025	110753024	+	High_confidence	11	11	16	0.487076	3.875000	chr5	110752669	110753313	LINE|L2|L2b	-	chr5	110753301	110765161	SLC25A46|ENST00000513706.2	+	110753301,110756701,110761203	110755521,110756759,110765161	0.937500
GM12878	chr3	127597568	127597590	127597589	+	High_confidence	5	5	17	0.517518	4.000000	chr3	127597557	127597694	LINE|L2|L2b	+	chr3	127598222	127622436	MCM2|ENST00000265056.11	+	127598222,127599317,127604607,127604895,127606117,127606609,127608381,127608831,127615861,127616867,127617278,127617968,127619026,127620697,127621072,127621662	127598472,127599547,127604783,127605156,127606337,127606817,127608516,127609023,127615955,127617118,127617405,127618081,127619278,127620880,127621228,127622436	0.764706
GM12878	chr7	102337207	102337264	102337263	+	High_confidence	6	7	27	0.821941	3.483075	chr7	102337158	102337268	SINE|Alu|AluYe5	-	chr7	102337315	102339115	AC091390.2|ENST00000432573.1	+	102337315,102337579,102338931	102337402,102337682,102339115	0.851852
GM12878	chr16	80892592	80892596	80892592	-	High_confidence	39	56	151	4.596780	5.850630	chr16	80892421	80892788	LTR|ERVL-MaLR|THE1B	-	chr16	80828734	80892595	ARLNC1|ENST00000562231.5	-	80828734,80840118,80892504	80830757,80840222,80892595	0.847682
GM12878	chr16	14606284	14606327	14606304	-	RAMPAGE_only	4	4	17	0.517518	3.625000	chr16	14606122	14606423	SINE|Alu|AluJb	+	chr16	14599934	14630218	PARN|ENST00000538472.5	-	14599934,14604145,14608280,14609057,14610643,14617589,14627105,14627268,14628171,14629596,14630106	14599960,14604226,14608319,14609123,14610809,14617650,14627136,14627336,14628251,14629674,14630218	0.588235
GM12878	chr8	65981105	65981120	65981105	+	RAMPAGE_only	16	18	36	1.095921	4.969816	chr8	65980910	65981286	LTR|ERVL-MaLR|THE1B	+	chr8	66021555	66100520	DNAJC5B|NM_033105.4	+	66021555,66043487,66051530,66076659,66080376,66099936	66021705,66043611,66051666,66076873,66080548,66100520	0.694444
GM12878	chr22	24503767	24503768	24503767	+	RAMPAGE_only	6	6	8	0.243538	2.521641	chr22	24503446	24504225	LTR|ERVL|MER54B	+	chr22	24495282	24526585	UPB1|NM_016327.2	+	24495282,24500106,24502125,24510748,24513323,24515200,24520386,24521985,24523618,24525710	24495507,24500278,24502213,24510843,24513485,24515370,24520468,24522028,24523773,24526585	0.625000
GM12878	chr2	95121537	95121558	95121537	-	High_confidence	3	3	15	0.456634	3.640224	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.733333
GM12878	chr19	3062922	3062986	3062922	-	High_confidence	62	81	368	11.202749	6.083898	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.970109
GM12878	chr5	143433949	143433967	143433958	-	High_confidence	6	7	21	0.639287	4.011365	chr5	143433605	143434321	LINE|L2|L2a	+	chr5	143281119	143434702	NR3C1|ENST00000504572.5	-	143281119,143282567,143295459,143298667,143300484,143310096,143313998,143399655,143433718,143434531	143282041,143282725,143295590,143298812,143300763,143310213,143314168,143400852,143433817,143434702	0.714286
GM12878	chr5	143026506	143026519	143026506	+	RAMPAGE_only	2	2	8	0.243538	2.807355	chr5	143026245	143027027	LINE|L2|L2a	-	chr5	143037195	143224150	ARHGAP26|ENST00000443674.5	+	143037195,143041815,143054438,143056027,143057641,143120987,143133966,143147230,143207197,143207443,143213996,143222357	143037261,143041890,143054526,143056086,143057747,143121147,143134105,143147381,143207308,143207473,143214088,143224150	0.875000
GM12878	chr19	18098814	18098818	18098815	-	RAMPAGE_only	7	13	22	0.669730	3.721928	chr19	18098747	18098949	LINE|L2|L2b	-	chr19	18083111	18086930	IL12RB1|ENST00000597416.1	-	18083111,18086759	18083491,18086930	0.500000
GM12878	chr1	51409874	51409877	51409874	-	RAMPAGE_only	2	2	7	0.213096	2.584963	chr1	51409855	51410005	LINE|L2|L2b	+	chr1	51403428	51422104	EPS15|ENST00000493793.1	-	51403428,51405904,51408134,51409534,51421785	51403532,51406108,51408332,51409696,51422104	0.714286
GM12878	chr9	121353738	121353771	121353760	-	RAMPAGE_only	3	3	10	0.304423	2.947703	chr9	121353676	121354130	LINE|L2|L2c	+	chr9	121339076	121370205	STOM|ENST00000286713.6	-	121339076,121348014,121349119,121353219,121354600,121356052,121370126	121341408,121348149,121349323,121353302,121354673,121356156,121370205	0.700000
GM12878	chr4	184537779	184537780	184537779	-	High_confidence	18	18	26	0.791499	4.363713	chr4	184537727	184538047	DNA|TcMar-Tigger|MER2	-	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.615385
GM12878	chr3	9792262	9792289	9792262	-	High_confidence	2	2	10	0.304423	3.169925	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9783127	9792736	TADA3|ENST00000343450.2	-	9783127,9785315,9787005,9787198,9789508,9789712,9791259,9792215	9784213,9785425,9787109,9787340,9789614,9789963,9791493,9792736	0.500000
GM12878	chr22	33472447	33472470	33472466	-	RAMPAGE_only	11	11	35	1.065479	4.686147	chr22	33472435	33472986	DNA|hAT-Charlie|MER20B	+	chr22	33162225	33384227	LARGE1|ENST00000608642.5	-	33162225,33304228,33316084,33337645,33381918,33384191	33166832,33304507,33316248,33337801,33382044,33384227	0.542857
GM12878	chr17	75296010	75296029	75296010	+	High_confidence	4	4	15	0.456634	3.132915	chr17	75296047	75296174	SINE|MIR|MIR3	+	chr17	75295925	75296437	MSTRG.11360.1	+	75295925	75296437	0.933333
GM12878	chr15	45631147	45631148	45631147	+	High_confidence	15	16	16	0.487076	3.506891	chr15	45630952	45631306	LTR|ERVL-MaLR|THE1A	+	chr15	45631147	45691280	SQOR|ENST00000568606.5	+	45631147,45631926,45658906,45661954,45669927,45673606,45676100,45682477,45688336,45689038,45690972	45631230,45632015,45659157,45662125,45669981,45673801,45676310,45682661,45688404,45689217,45691280	0.875000
GM12878	chr19	51599285	51599286	51599285	+	High_confidence	10	10	10	0.304423	2.921928	chr19	51598978	51599473	LTR|ERV1|LTR12	+	chr19	51599288	51600470	AC018755.1|ENST00000601315.1	+	51599288	51600470	0.600000
GM12878	chr12	96541542	96541560	96541542	+	RAMPAGE_only	3	4	14	0.426192	3.546594	chr12	96541287	96541585	SINE|Alu|AluSz	-	chr12	96540136	96644210	CFAP54|ENST00000554108.6	+	96540136,96540836,96547901,96554181,96554675,96576584,96580596,96580919,96589426,96592489,96594290,96598644,96621589,96623766,96625717,96626812,96630092,96630550,96644177	96540245,96540987,96547978,96554310,96554802,96576761,96580689,96581105,96589563,96592637,96594446,96598767,96621721,96623881,96625807,96626939,96630204,96630651,96644210	0.571429
GM12878	chr16	57357888	57357931	57357924	+	High_confidence	105	105	544	16.560585	6.444546	chr16	57357889	57358182	LINE|L2|L2b	-	chr16	57357894	57366190	MSTRG.9490.1	+	57357894,57358786,57360436,57363503	57358148,57358889,57360560,57366190	0.935662
GM12878	chr16	396826	396849	396826	+	High_confidence	2	3	10	0.304423	2.725481	chr16	396818	396940	SINE|Alu|AluJb	-	chr16	396768	399474	NME4|ENST00000454619.5	+	396768,398207,398989,399378	397079,398385,399123,399474	0.500000
GM12878	chr7	107580245	107580267	107580264	+	High_confidence	855	856	3896	118.603014	6.229474	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.949179
GM12878	chr1	42959029	42959078	42959077	+	High_confidence	23	26	137	4.170589	3.465353	chr1	42959103	42959181	SINE|MIR|MIR3	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.992701
GM12878	chr22	24503409	24503461	24503409	+	RAMPAGE_only	16	17	43	1.309017	4.945772	chr22	24503446	24504225	LTR|ERVL|MER54B	+	chr22	24495282	24526585	UPB1|NM_016327.2	+	24495282,24500106,24502125,24510748,24513323,24515200,24520386,24521985,24523618,24525710	24495507,24500278,24502213,24510843,24513485,24515370,24520468,24522028,24523773,24526585	0.883721
GM12878	chr20	51526029	51526044	51526030	-	RAMPAGE_only	14	20	38	1.156806	4.333325	chr20	51525529	51526222	LINE|L2|L2b	+	chr20	51386956	51542719	NFATC2|NM_012340.4	-	51386956,51398642,51432066,51435187,51435705,51454547,51473979,51475457,51516783,51523080,51542369	51391451,51398730,51432756,51435314,51435761,51454688,51474152,51475660,51516955,51524110,51542719	1.000000
GM12878	chr1	46340161	46340196	46340172	+	High_confidence	24	24	119	3.622628	4.667035	chr1	46340061	46340361	SINE|Alu|AluYf1	-	chr1	46340176	46365152	NSUN4|NR_045789.1	+	46340176,46341322,46344800,46346920,46352867,46360703,46361569	46340919,46341497,46345144,46347075,46353028,46360828,46365152	1.000000
GM12878	chr20	15985998	15986014	15985998	-	High_confidence	4	5	8	0.243538	2.500000	chr20	15985767	15986246	LTR|ERV1|LTR2B	-	chr20	15892332	15985882	LOC613266|NR_130924.1	-	15892332,15985502	15894277,15985882	1.000000
GM12878	chr22	18149868	18149869	18149868	+	High_confidence	11	11	12	0.365307	2.663533	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.916667
GM12878	chr17	59892716	59892746	59892716	-	High_confidence	34	40	136	4.140146	5.221188	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.897059
GM12878	chr1	212697248	212697252	212697250	-	RAMPAGE_only	7	9	14	0.426192	3.546594	chr1	212697248	212697403	SINE|MIR|MIRb	-	chr1	212686417	212698755	BATF3|ENST00000478275.1	-	212686417,212696960	212686979,212698755	0.857143
GM12878	chr12	109053951	109053961	109053956	-	High_confidence	243	294	747	22.740362	5.232609	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.922356
GM12878	chr8	51359026	51359030	51359029	-	RAMPAGE_only	9	14	26	0.791499	3.979098	chr8	51358978	51359072	LINE|L1|L1MEj	+	chr8	51319930	51340185	PXDNL|ENST00000519183.1	-	51319930,51320783,51339623	51320022,51320897,51340185	0.538462
GM12878	chr3	127735938	127735955	127735938	-	High_confidence	6	8	20	0.608845	3.826875	chr3	127735830	127736012	LINE|CR1|L3b	-	chr3	127692116	127736357	MGLL|ENST00000398101.7	-	127692116,127694974,127710575,127721052,127722429,127735704	127692323,127695190,127710665,127721163,127722566,127736357	0.850000
GM12878	chr16	57404834	57404835	57404834	+	High_confidence	162	176	176	5.357836	4.755126	chr16	57404660	57404877	SINE|MIR|MIR	-	chr16	57404766	57416062	CCL17|NM_002987.2	+	57404766,57413873,57415080,57415764	57404836,57414002,57415198,57416062	0.988636
GM12878	chr17	47067498	47067534	47067498	-	High_confidence	357	393	1627	49.529544	5.792242	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.936079
GM12878	chr1	54200548	54200569	54200568	+	High_confidence	4	4	10	0.304423	2.503258	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.500000
GM12878	chr8	118282180	118282195	118282180	+	High_confidence	2	2	10	0.304423	2.947703	chr8	118282102	118282313	SINE|MIR|MIRc	-	chr8	118282241	118284963	AC023590.1|ENST00000366457.2	+	118282241,118284271	118282330,118284963	0.700000
GM12878	chr1	234629347	234629381	234629347	+	High_confidence	2	2	13	0.395749	3.084963	chr1	234629391	234629833	LTR|ERVL-MaLR|MLT1J2	+	chr1	234629310	234634780	LINC00184|NR_033927.1	+	234629310,234632947	234629747,234634780	0.846154
GM12878	chr6	113873326	113873388	113873346	-	High_confidence	52	57	285	8.676042	5.544045	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.908772
GM12878	chr6	149052480	149052527	149052480	+	RAMPAGE_only	18	19	93	2.831129	4.187815	chr6	149052334	149052576	SINE|MIR|MIRb	-	chr6	149066175	149074250	UST|ENST00000466695.1	+	149066175,149073832	149066254,149074250	0.526882
GM12878	chr1	160739093	160739094	160739093	+	High_confidence	6	6	9	0.273980	2.641604	chr1	160738592	160739182	LINE|L1|L1MDa	+	chr1	160739056	160754814	SLAMF7|ENST00000444090.6	+	160739056,160748193,160752185,160753105	160739356,160748514,160752248,160754814	0.777778
GM12878	chr20	53608803	53608804	53608803	-	High_confidence	5	5	7	0.213096	2.521641	chr20	53608733	53608922	SINE|MIR|MIR	+	chr20	53582541	53608892	ZNF217|ENST00000431687.5	-	53582541,53608353,53608831	53583168,53608444,53608892	0.571429
GM12878	chr9	89479889	89479890	89479889	-	High_confidence	28	28	28	0.852383	3.896292	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89362238	89479890	SEMA4D|ENST00000537934.5	-	89362238,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89418362,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89418437,89455953,89479890	1.000000
GM12878	chr15	51936181	51936203	51936197	-	RAMPAGE_only	12	18	40	1.217690	3.614601	chr15	51935784	51936413	LTR|ERVL|LTR50	-	chr15	51919072	51930627	AC090971.3|ENST00000557871.1	-	51919072,51921783,51922721,51924039,51925745,51926780,51928206,51929333,51930530	51919145,51921873,51922908,51924177,51925881,51926870,51928291,51929478,51930627	0.875000
GM12878	chr17	69503903	69503904	69503903	+	RAMPAGE_only	9	9	10	0.304423	2.503258	chr17	69503793	69503987	SINE|MIR|MIRc	-	chr17	69502428	69542017	MAP2K6|ENST00000613873.4	+	69502428,69505779,69516854,69517499,69519312,69520269,69521048,69523513,69524900,69526569,69536114,69541675	69502684,69505846,69516903,69517613,69519432,69520386,69521100,69523641,69524978,69526709,69536160,69542017	0.900000
GM12878	chr3	112497986	112498023	112498022	-	RAMPAGE_only	8	8	27	0.821941	4.623517	chr3	112498003	112498161	SINE|tRNA-RTE|MamSINE1	+	chr3	112463965	112499561	BTLA|NM_181780.3	-	112463965,112469757,112471211,112479454,112499270	112466383,112469804,112471355,112479769,112499561	0.555556
GM12878	chr4	2748338	2748381	2748364	-	RAMPAGE_only	7	9	48	1.461228	4.486441	chr4	2748179	2748346	SINE|Alu|AluSx1	-	chr4	2745335	2756024	TNIP2|ENST00000507686.1	-	2745335,2747654,2755975	2745535,2747945,2756024	0.791667
GM12878	chr19	39335666	39335673	39335672	-	High_confidence	17	18	29	0.882825	4.375222	chr19	39335628	39335746	DNA|hAT-Tip100|MER91A	-	chr19	39328358	39335531	GMFG|ENST00000596583.5	-	39328358,39328999,39329547,39333076,39335434	39328548,39329073,39329626,39333126,39335531	0.827586
GM12878	chrX	11768326	11768327	11768326	+	RAMPAGE_only	74	74	100	3.044225	4.345051	chrX	11768069	11768425	LINE|L1|L1MB7	-	chrX	11765537	11775740	MSL3|ENST00000647839.1	+	11765537,11766960,11768621,11772155,11772620,11774979	11765729,11767169,11768682,11772255,11772705,11775740	0.990000
GM12878	chr2	226843274	226843301	226843284	+	RAMPAGE_only	7	8	27	0.821941	3.704349	chr2	226841304	226844068	LINE|L1|L1PA11	-	chr2	226837547	226864856	RHBDD1|ENST00000436481.1	+	226837547,226838072,226839408,226864603	226837770,226838154,226839627,226864856	0.851852
GM12878	chr3	16514516	16514517	16514516	-	High_confidence	11	11	16	0.487076	3.106891	chr3	16514420	16514536	SINE|MIR|MIR	+	chr3	16315844	16513715	RFTN1|NM_015150.1	-	16315844,16323375,16326772,16357931,16370075,16377717,16409374,16433850,16493724,16513441	16317232,16323457,16326876,16358047,16370279,16378102,16409483,16434037,16493877,16513715	0.687500
GM12878	chrX	153980543	153980544	153980543	+	High_confidence	6	6	9	0.273980	2.500000	chrX	153980433	153980607	SINE|MIR|MIR3	+	chrX	153980605	153982161	TMEM187|ENST00000431598.1	+	153980605,153981849	153980623,153982161	0.555556
GM12878	chr9	128682856	128682883	128682882	+	High_confidence	4	4	11	0.334865	2.921928	chr9	128682667	128682974	SINE|Alu|AluYm1	-	chr9	128683423	128693998	MSTRG.24449.1	+	128683423,128683779,128691169,128691857,128692661,128692867,128693637,128693895	128683446,128684007,128691227,128692000,128692765,128692981,128693808,128693998	0.545455
GM12878	chr9	110999531	110999536	110999535	-	High_confidence	3	3	7	0.213096	2.521641	chr9	110999490	110999712	LTR|ERVL-MaLR|MLT1A	-	chr9	110873777	110999466	LPAR1|ENST00000374430.6	-	110873777,110941420,110972072,110973480,110999392	110875722,110942168,110972220,110973558,110999466	0.571429
GM12878	chr1	40313225	40313254	40313236	-	RAMPAGE_only	26	27	73	2.222284	4.688601	chr1	40313156	40313468	SINE|Alu|AluSz6	-	chr1	40310110	40315438	COL9A2|ENST00000488463.6	-	40310110,40310263,40310713,40311092,40311229,40311499,40311661,40312058,40312455,40312573,40312730,40314204,40314351,40315237	40310164,40310317,40310767,40311146,40311286,40311547,40311715,40312112,40312479,40312609,40312784,40314267,40314387,40315438	0.821918
GM12878	chr8	141143979	141144000	141143984	+	High_confidence	3	3	11	0.334865	2.921928	chr8	141143796	141144020	LINE|L1|L1ME3A	-	chr8	141143913	141150889	DENND3|ENST00000523015.1	+	141143913,141150833	141144259,141150889	0.636364
GM12878	chr9	98010583	98010640	98010592	+	RAMPAGE_only	9	10	52	1.582997	5.378230	chr9	98010508	98010692	LINE|L2|L2b	-	chr9	97983360	98015943	ANP32B|ENST00000339399.4	+	97983360,97994630,97998555,98004963,98011270,98012420,98015363	97983609,97994780,97998678,98005153,98011389,98012472,98015943	0.865385
GM12878	chr20	50114047	50114048	50114047	-	High_confidence	7	7	9	0.273980	2.947703	chr20	50113815	50114114	LINE|L2|L2b	-	chr20	50081123	50113198	UBE2V1|NM_001282578.2	-	50081123,50084128,50096482,50113106	50082914,50084254,50096820,50113198	1.000000
GM12878	chr11	8718470	8718502	8718501	-	High_confidence	4	5	12	0.365307	3.277613	chr11	8718453	8718544	LINE|L2|L2a	+	chr11	8693747	8718477	ST5|ENST00000526099.5	-	8693747,8695462,8696426,8697524,8698932,8699212,8702571,8707084,8707776,8710844,8711121,8712550,8713997,8714609,8715602,8717740,8718358	8694130,8695549,8696666,8697636,8698974,8699390,8702720,8707225,8707854,8710914,8711231,8712735,8714042,8714706,8715818,8717892,8718477	0.916667
GM12878	chr1	30745993	30746027	30746026	-	High_confidence	37	37	70	2.130958	4.520280	chr1	30745778	30745999	SINE|MIR|MIRb	-	chr1	30733888	30746229	LAPTM5|ENST00000464569.1	-	30733888,30735172,30737603,30738939,30739808,30741639,30742455,30745917	30733917,30735265,30737699,30739062,30739937,30741716,30742549,30746229	0.971429
GM12878	chr5	119355080	119355106	119355080	+	High_confidence	5	5	13	0.395749	3.180833	chr5	119354988	119355145	SINE|MIR|MIRc	-	chr5	119355312	119393446	TNFAIP8|ENST00000504642.1	+	119355312,119392815	119355392,119393446	0.692308
GM12878	chr1	11058829	11058837	11058829	-	RAMPAGE_only	5	5	15	0.456634	3.323231	chr1	11058682	11058785	SINE|MIR|MIRc	-	chr1	11054588	11060024	SRM|ENST00000376957.6	-	11054588,11054961,11055780,11056010,11056603,11058799,11059224,11059776	11054885,11055084,11055926,11056094,11056757,11058892,11059345,11060024	1.000000
GM12878	chr1	40381277	40381293	40381277	+	RAMPAGE_only	2	2	6	0.182654	2.584963	chr1	40381190	40381531	LINE|L2|L2c	-	chr1	40374647	40423326	SMAP2|ENST00000372708.5	+	40374647,40406735,40408652,40409756,40413015,40414158,40415271,40416175,40416779,40421975	40374708,40406869,40408738,40409835,40413102,40414240,40415381,40416341,40417096,40423326	0.833333
GM12878	chr16	30535319	30535320	30535319	-	High_confidence	10	10	11	0.334865	2.921928	chr16	30535226	30535680	LTR|ERV1|MER4A1	-	chr16	30530366	30535347	ZNF747|ENST00000252799.3	-	30530366,30534196	30533151,30535347	0.909091
GM12878	chr3	169812903	169812904	169812903	-	High_confidence	10	10	15	0.456634	3.235926	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.933333
GM12878	chr6	31587190	31587228	31587201	+	High_confidence	9	9	42	1.278575	4.211136	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	1.000000
GM12878	chr1	213070668	213070675	213070668	+	RAMPAGE_only	7	7	18	0.547961	4.058814	chr1	213070430	213070829	LTR|ERV1|MER57B1	-	chr1	213072937	213274773	RPS6KC1|ENST00000490299.5	+	213072937,213077695,213104453,213129526,213167857,213176399,213230496,213232122,213240701,213242568,213261557,213262720,213272523	213072986,213077816,213104569,213129889,213167973,213176492,213230544,213232255,213242297,213242658,213261640,213262816,213274773	0.500000
GM12878	chr1	30746134	30746165	30746136	-	High_confidence	13	20	65	1.978746	5.369022	chr1	30746078	30746197	SINE|MIR|MIR3	+	chr1	30733888	30746229	LAPTM5|ENST00000464569.1	-	30733888,30735172,30737603,30738939,30739808,30741639,30742455,30745917	30733917,30735265,30737699,30739062,30739937,30741716,30742549,30746229	0.907692
GM12878	chr9	109411121	109411158	109411157	-	RAMPAGE_only	4	4	13	0.395749	3.392747	chr9	109411002	109411182	DNA|hAT-Charlie|MER3	-	chr9	109375693	109417783	PTPN3|NR_026918.1	-	109375693,109381651,109382301,109383422,109389232,109391137,109391470,109404447,109406461,109408320,109409998,109410228,109417588	109379633,109381787,109382447,109383551,109389379,109391199,109391561,109404608,109406618,109408377,109410076,109410415,109417783	0.692308
GM12878	chr11	1897046	1897047	1897046	+	High_confidence	7	7	8	0.243538	2.521641	chr11	1896880	1897269	LTR|ERV1|MER57B2	-	chr11	1897014	1908656	LINC01150|ENST00000455671.2	+	1897014,1901715,1902589,1903103,1907831	1897145,1901770,1902724,1903256,1908656	0.750000
GM12878	chr11	66128786	66128803	66128786	+	RAMPAGE_only	7	7	13	0.395749	3.700440	chr11	66128601	66128898	SINE|Alu|AluSx	+	chr11	66100762	66216250	PACS1|ENST00000527380.1	+	66100762,66193485,66210361,66211133,66216118	66100874,66193573,66210451,66211259,66216250	0.923077
GM12878	chr11	121590864	121590865	121590864	+	High_confidence	6	6	9	0.273980	3.169925	chr11	121590682	121590892	DNA|TcMar-Tigger|Tigger19a	+	chr11	121590418	121629684	SORL1|ENST00000527934.1	+	121590418,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121590897,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121629684	1.000000
GM12878	chr8	125159056	125159057	125159056	+	RAMPAGE_only	5	5	8	0.243538	3.000000	chr8	125159091	125159287	DNA|TcMar-Tigger|Tigger7	+	chr8	125124143	125367118	NSMCE2|ENST00000517315.1	+	125124143,125126965,125151170,125182102,125357218,125357711,125366767	125124217,125127067,125151277,125182256,125357319,125357818,125367118	1.000000
GM12878	chr11	118926365	118926407	118926406	-	High_confidence	3	3	10	0.304423	2.521928	chr11	118926282	118926450	LINE|L2|L2c	+	chr11	118897745	118925608	BCL9L|ENST00000526143.2	-	118897745,118899916,118900618,118902989,118903235,118907482,118908269,118925237	118899508,118900198,118902908,118903074,118903452,118907602,118908655,118925608	0.900000
GM12878	chr10	89888037	89888047	89888037	+	RAMPAGE_only	23	23	50	1.522113	4.467601	chr10	89888002	89888814	LTR|ERV1|LTR8B	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.740000
GM12878	chr5	124725085	124725121	124725085	-	RAMPAGE_only	2	2	10	0.304423	2.947703	chr5	124724874	124725417	LINE|L2|L2a	+	chr5	124643510	124744367	ZNF608|ENST00000503896.6	-	124643510,124649609,124701013,124744083	124643683,124649697,124701269,124744367	0.700000
GM12878	chr6	31494687	31494731	31494730	+	High_confidence	12	14	37	1.126363	3.990017	chr6	31494550	31494850	SINE|Alu|AluSp	+	chr6	31494880	31511124	MICB|NM_001289160.1	+	31494880,31505616,31506142,31507021,31507399,31509781	31494995,31505871,31506430,31507300,31507531,31511124	0.891892
GM12878	chr1	167937045	167937052	167937048	-	High_confidence	3	3	9	0.273980	2.750000	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167918067	167937040	MPC2|ENST00000271373.8	-	167918067,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937040	0.888889
GM12878	chr20	380623	380634	380623	+	High_confidence	5	5	9	0.273980	2.725481	chr20	380404	380708	SINE|Alu|AluY	+	chr20	380628	397559	TRIB3|NM_021158.4	+	380628,388010,391286,396197	381169,388301,391579,397559	1.000000
GM12878	chr1	28506216	28506318	28506317	+	High_confidence	7	7	47	1.430786	4.283752	chr1	28506187	28506484	SINE|Alu|AluSx	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.893617
GM12878	chr6	31586978	31587021	31587009	+	High_confidence	50	81	186	5.662259	5.490600	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.962366
GM12878	chr2	68363903	68363941	68363903	-	RAMPAGE_only	6	9	19	0.578403	3.176110	chr2	68363668	68364090	LTR|ERVL-MaLR|MLT1C	-	chr2	68361213	68365584	AC015969.1|ENST00000366218.2	-	68361213,68365414	68362459,68365584	0.526316
GM12878	chr6	88179738	88179781	88179738	-	RAMPAGE_only	9	11	39	1.187248	4.387465	chr6	88179609	88179800	LTR|ERVL|LTR33A_	-	chr6	88177803	88420970	AL139042.1|ENST00000648572.1	-	88177803,88280813,88298860,88303844,88315583,88323999,88420943	88178434,88280949,88299015,88304220,88315733,88324145,88420970	0.923077
GM12878	chr6	11728514	11728527	11728526	-	High_confidence	3	3	9	0.273980	3.000000	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	69315814	69315822	69315818	+	High_confidence	6	6	19	0.518750	3.947703	chr10	69315806	69315937	SINE|MIR|MIRc	+	chr10	69315784	69401443	HK1|ENST00000298649.8	+	69315784,69343826,69359896,69364782,69368535,69369236,69369440,69376933,69379861,69382486,69384332,69384795,69386322,69389196,69392124,69394949,69398594,69400990	69316014,69343989,69360045,69364902,69368631,69369336,69369624,69377089,69380095,69382791,69384481,69384915,69386418,69389296,69392308,69395105,69398828,69401443	0.631579
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	36807869	36807870	36807869	-	High_confidence	6	6	8	0.218421	2.500000	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	19386333	19386346	19386334	-	High_confidence	9	12	21	0.573355	3.892407	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.904762
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	199259	199292	199291	+	RAMPAGE_only	6	7	17	0.464144	3.577820	chr18	199329	199945	DNA|TcMar-Tigger|Tigger17a	+	chr18	196538	211268	USP14|ENST00000578786.1	+	196538,197615,198046,199201,202879,203097,204563,209970,210385,211132	196767,197696,198132,199316,202945,203190,204692,210031,210493,211268	0.823529
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	128428000	128428006	128428005	+	High_confidence	5	5	9	0.245723	3.000000	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.777778
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	62133952	62133956	62133955	+	High_confidence	5	5	11	0.300329	2.921928	chr4	62133506	62134415	LTR|ERVL|MER21A	+	chr4	62133736	62246859	MSTRG.16349.1	+	62133736,62137736,62214648	62134051,62137823,62246859	0.636364
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	110496232	110496245	110496244	-	High_confidence	4	5	12	0.327631	3.095795	chr10	110496171	110496447	LINE|L2|L2b	+	chr10	110475103	110496204	AL355512.1|ENST00000607952.1	-	110475103,110496118	110475226,110496204	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	113625673	113625675	113625673	-	RAMPAGE_only	3	5	8	0.218421	2.807355	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	77369117	77369167	77369166	-	High_confidence	124	156	430	11.740121	7.132707	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77143544	77369166	MSTRG.19003.1	-	77143544,77151818,77271339,77273026,77350621,77368885	77151280,77151974,77271493,77273307,77350734,77369166	0.895349
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	107580458	107580507	107580506	+	High_confidence	13	13	26	0.709868	4.188722	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.846154
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	173224082	173224307	173224235	+	RAMPAGE_only	12	13	128	3.494734	5.545157	chr2	173223967	173224276	LINE|L2|L2a	-	chr2	173075841	173227146	MAP3K20|ENST00000338983.7	+	173075841,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173221149	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173227146	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	153967486	153967487	153967486	+	High_confidence	14	15	20	0.546052	3.826875	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	177499665	177499710	177499706	+	RAMPAGE_only	3	4	15	0.409539	3.182006	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177436983	177543836	MSTRG.12915.5	+	177436983,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177538073	177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177543836	0.866667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	100168836	100168869	100168850	-	RAMPAGE_only	3	3	13	0.354934	3.251629	chr1	100168654	100168846	SINE|MIR|MIR	-	chr1	100148852	100178215	LRRC39|ENST00000370137.5	-	100148852,100152384,100155050,100156171,100158230,100159258,100160465,100168403,100173330,100178134	100149097,100152524,100155203,100156317,100158367,100159415,100160571,100168594,100173370,100178215	0.923077
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	9433177	9433197	9433196	+	RAMPAGE_only	4	4	8	0.218421	2.500000	chr3	9433181	9433352	SINE|5S-Deu-L2|AmnSINE1	+	chr3	9429949	9476459	MSTRG.14649.13	+	9429949,9433844,9434333,9434823,9435727,9440455,9441592,9442127,9443307,9445047,9445656,9447049,9447685,9448387,9453738,9464424,9470458,9473235,9474448,9475067,9475482	9433562,9433950,9434485,9434882,9435906,9440698,9441741,9442245,9443417,9445300,9445740,9447307,9448006,9448630,9453868,9464672,9470929,9473537,9474582,9475156,9476459	0.625000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	23426188	23426259	23426243	-	RAMPAGE_only	8	8	61	1.665459	4.467485	chr14	23426188	23426408	SINE|MIR|MIRc	-	chr14	23412737	23435686	MYH7|NM_000257.3	-	23412737,23413758,23414006,23414994,23415380,23415628,23416003,23416867,23417152,23417502,23418209,23419176,23419482,23419844,23420957,23422179,23423546,23423906,23424768,23425281,23425694,23425963,23426776,23427239,23427584,23428499,23428954,23429228,23429774,23430559,23430900,23431417,23431584,23431760,23432478,23432638,23433083,23433531,23434193,23435619	23412871,23413893,23414102,23415270,23415506,23415832,23416312,23416992,23417318,23417686,23418406,23419295,23419609,23420234,23421048,23422325,23423723,23424149,23425024,23425418,23425818,23426081,23426864,23427307,23427894,23428670,23429104,23429347,23429913,23430663,23430999,23431481,23431677,23431869,23432506,23432795,23433227,23433740,23434249,23435686	0.737705
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	49789498	49789508	49789498	-	RAMPAGE_only	3	3	10	0.273026	3.169925	chr14	49789398	49789451	LINE|L2|L2a	-	chr14	49784904	49787174	NEMF|ENST00000554275.1	-	49784904,49786717	49785320,49787174	0.700000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	134485415	134485471	134485443	-	High_confidence	38	38	244	6.661836	6.520623	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.954918
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	159259106	159259155	159259128	+	RAMPAGE_only	3	3	13	0.354934	2.777363	chr4	159258962	159259174	SINE|MIR|MIRb	-	chr4	159103037	159360169	MSTRG.16931.2	+	159103037,159186641,159193199,159210499,159238808,159241200,159314590,159322346,159323458,159329857,159330333,159331430,159331925,159332450,159338310,159339113,159342978,159343280,159352684,159353486,159355852,159358113	159104231,159186712,159193256,159228357,159238884,159304473,159314768,159322483,159323617,159330010,159330498,159331833,159332034,159332697,159338468,159341947,159343190,159351133,159352910,159354046,159356158,159360169	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	93795069	93795117	93795069	+	High_confidence	15	15	77	2.102301	4.964390	chr8	93794953	93795181	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.883117
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	106450739	106450765	106450764	+	High_confidence	9	9	32	0.873683	4.601410	chr9	106450433	106450967	LTR|ERVL-MaLR|MLT1G1	+	chr9	106450815	106604795	LINC01505|ENST00000425709.1	+	106450815,106558471,106588376,106603755	106450888,106558583,106588464,106604795	0.781250
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	212460278	212460281	212460278	-	RAMPAGE_only	4	4	8	0.218421	2.807355	chr2	212460266	212461716	LTR|ERVL-MaLR|THE1B-int	+	chr2	212192127	212538529	MSTRG.13178.12	-	212192127,212391649,212426361	212391609,212426275,212538529	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	159005961	159005962	159005961	+	High_confidence	112	113	121	3.303615	5.678057	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.884298
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	77284959	77284966	77284960	-	RAMPAGE_only	2	3	7	0.191118	2.584963	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	78600124	78600125	78600124	+	RAMPAGE_only	4	4	7	0.191118	2.807355	chr4	78599930	78600224	LTR|ERV1|MER92A	-	chr4	78601863	78610451	ANXA3|ENST00000503776.2	+	78601863,78610055	78604399,78610451	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	48979481	48979495	48979494	+	RAMPAGE_only	3	3	7	0.191118	2.584963	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	49086520	49086547	49086520	+	RAMPAGE_only	4	6	15	0.409539	3.773557	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49085494	49108605	SNRNP70|ENST00000595231.5	+	49085494,49086404,49090290,49090465,49098426,49098641,49101389,49102113,49104633,49107624,49107821	49085636,49086561,49090353,49090520,49098491,49098704,49101471,49102185,49104735,49107712,49108605	0.733333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	52236320	52236338	52236325	-	RAMPAGE_only	12	12	38	1.037499	4.481627	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.763158
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	113485567	113485605	113485593	-	RAMPAGE_only	29	30	64	1.747367	5.656250	chr13	113485255	113485582	LINE|RTE-X|L4_B_Mam	-	chr13	113474196	113484190	DCUN1D2|ENST00000465938.5	-	113474196,113480574,113483839	113474254,113480743,113484190	0.562500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	64283158	64283324	64283323	-	RAMPAGE_only	7	7	68	1.856577	4.594477	chr4	64282948	64283326	LTR|ERVL|LTR16A	+	chr4	64277701	64409398	MSTRG.16353.3	-	64277701,64281040,64281473,64299973,64305165,64309825,64314647,64322688,64328511,64375171,64409117	64280199,64281086,64289767,64300017,64305238,64309931,64314763,64322792,64328556,64375223,64409398	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	67387491	67387538	67387491	-	RAMPAGE_only	2	3	11	0.300329	2.921928	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	66890406	67390684	MSTRG.2774.1	-	66890406,67365569	66904889,67390684	0.545455
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	100173354	100173372	100173371	-	RAMPAGE_only	4	5	22	0.600657	4.277613	chr1	100173269	100174301	LINE|L1|L1M5	+	chr1	100148852	100178215	LRRC39|ENST00000370137.5	-	100148852,100152384,100155050,100156171,100158230,100159258,100160465,100168403,100173330,100178134	100149097,100152524,100155203,100156317,100158367,100159415,100160571,100168594,100173370,100178215	0.954545
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	21557775	21557815	21557801	+	RAMPAGE_only	2	2	9	0.245723	3.000000	chr10	21557565	21557912	LTR|ERVL-MaLR|MLT1K	-	chr10	21534644	21743630	MLLT10|NM_001195626.1	+	21534644,21538832,21586293,21595330,21612347,21614830,21617111,21651672,21670448,21673349,21681331,21682224,21713771,21726243,21727855,21730899,21732898,21733503,21733767,21735138,21740029,21741938	21534804,21538912,21586348,21595440,21612451,21614924,21617207,21651768,21670704,21673919,21681376,21682257,21713950,21726355,21727928,21731054,21733087,21733592,21734129,21735235,21740236,21743630	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	114474235	114474265	114474264	-	RAMPAGE_only	3	3	7	0.191118	2.807355	chr10	114474202	114474384	LINE|L2|L2b	+	chr10	114450078	114487993	ABLIM1|ENST00000440467.5	-	114450078,114451623,114465697,114468180,114472976,114473878,114487957	114450135,114451671,114465827,114468216,114473132,114473956,114487993	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	134432435	134432453	134432435	-	High_confidence	6	6	12	0.327631	2.845351	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	50605308	50605381	50605336	-	RAMPAGE_only	12	12	51	1.392433	5.287923	chr10	50605179	50605339	DNA|hAT-Tip100?|MamRep1879	-	chr10	50341331	50623977	SGMS1|ENST00000619438.4	-	50341331,50343491,50433475,50460672,50466889,50519830,50590152,50623706	50341434,50344345,50433556,50460814,50466932,50519921,50590247,50623977	0.588235
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	133089676	133089678	133089676	+	RAMPAGE_only	7	14	21	0.573355	4.297079	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	69307085	69307135	69307113	-	High_confidence	1225	1241	6019	164.334387	6.986051	chr9	69306938	69307567	LTR|ERV1|MER41B	-	chr9	69296684	69307135	BANCR|ENST00000624238.2	-	69296684,69304935,69306147,69306853	69296867,69305077,69306290,69307135	0.931052
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	84139251	84139256	84139251	-	RAMPAGE_only	3	4	7	0.191118	2.807355	chr16	84139153	84139637	LTR|ERVL-MaLR|MLT1D	+	chr16	84130318	84144438	HSDL1|ENST00000568857.5	-	84130318,84131101,84135543,84144290	84130431,84131327,84135605,84144438	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	64242601	64242620	64242619	+	High_confidence	86	88	190	5.187495	5.893367	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	65570441	65570466	65570441	+	High_confidence	2	2	10	0.273026	2.947703	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570874	65615757	LINC01515|ENST00000593568.1	+	65570874,65572934,65585484,65615635	65571579,65573056,65585567,65615757	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	79013881	79013910	79013881	+	RAMPAGE_only	12	12	20	0.546052	4.021928	chr4	79013849	79013996	SINE|5S-Deu-L2|AmnSINE1	-	chr4	78971747	79308799	LINC01088|NR_038342.1	+	78971747,78972999,79086095,79195835,79306690,79308272	78971876,78973052,79086262,79195932,79306728,79308799	0.700000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	32927967	32927984	32927976	+	High_confidence	703	759	1482	40.462462	7.003602	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927964	33044802	MSTRG.20959.1	+	32927964,32996200,33041634,33044366	32928093,32996316,33041771,33044802	0.834008
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	76781637	76781641	76781637	+	RAMPAGE_only	5	5	10	0.273026	3.169925	chr12	76781376	76781761	LTR|ERVL-MaLR|MSTD	+	chr12	76797518	76822490	ZDHHC17|ENST00000549944.1	+	76797518,76805316,76809042,76809712,76813312,76815145,76815856,76822405	76797537,76805439,76809120,76809857,76813449,76815210,76816019,76822490	0.700000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	127687241	127687259	127687258	+	RAMPAGE_only	4	5	8	0.218421	2.807355	chr4	127687077	127687313	SINE|MIR|MIRb	-	chr4	127632956	127716775	INTU|ENST00000503626.5	+	127632956,127643520,127656635,127663380,127669035,127674123,127675904,127683803,127684408,127685441,127700009,127704227,127705590,127706486,127708570,127710912,127713935,127716324	127633180,127644056,127656721,127663584,127669154,127674213,127676065,127683900,127684486,127687867,127700063,127704290,127705812,127706969,127708668,127711102,127714093,127716775	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	56561310	56561330	56561321	-	High_confidence	2	2	8	0.218421	2.807355	chr6	56561134	56561273	SINE|MIR|MIR	-	chr6	56555607	56560442	DST|ENST00000520144.1	-	56555607,56557318,56560293	56555840,56557518,56560442	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	30975186	30975380	30975258	+	RAMPAGE_only	28	28	204	5.569732	4.651301	chr22	30975231	30975411	DNA|hAT-Charlie|Charlie15a	-	chr22	30972262	30976063	TUG1|ENST00000602393.1	+	30972262,30975169	30973601,30976063	0.970588
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	86285664	86285666	86285664	-	RAMPAGE_only	6	11	17	0.464144	2.813846	chr2	86285416	86285647	SINE|MIR|MIR	-	chr2	86251351	86282210	REEP1|ENST00000489855.2	-	86251351,86254693,86263964,86282169	86252070,86254814,86264041,86282210	0.764706
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	11196126	11196182	11196126	-	High_confidence	4	4	19	0.518750	3.461320	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.894737
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	1505119	1505137	1505136	+	RAMPAGE_only	5	5	9	0.245723	2.500000	chr1	1504965	1505957	LTR|ERVK|LTR13	-	chr1	1503249	1509452	AL645728.2|ENST00000641974.1	+	1503249,1509204	1503661,1509452	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	119179204	119179225	119179218	+	High_confidence	4	5	13	0.354934	2.751629	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.923077
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	3795750	3795789	3795750	+	High_confidence	23	23	177	4.832561	6.071227	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.988701
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	235977048	235977219	235977097	-	RAMPAGE_only	40	44	183	4.996377	5.853350	chr1	235977053	235977230	DNA|hAT-Tip100|UCON132b	+	chr1	235975829	236065109	NID1|ENST00000366595.7	-	235975829,235978994,235979821,235980495,235981610,235985378,235990885,235993644,236024069,236025895,236029549,236032400,236038103,236041909,236045456,236048689,236064854	235977988,235979107,235979945,235980653,235981782,235985505,235991058,235993872,236024213,236026141,236029750,236032652,236038253,236042292,236045683,236048989,236065109	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	16048837	16048862	16048861	+	High_confidence	48	48	121	3.303615	5.829196	chr1	16048792	16048900	SINE|MIR|MIR	+	chr1	16048788	16057308	CLCNKB|ENST00000375667.7	+	16048788,16049617,16049814,16050515,16050874,16051477,16051709,16052197,16053638,16055434,16055677,16056421,16056868	16049245,16049702,16049916,16050600,16051048,16051547,16051820,16052411,16053772,16055523,16055758,16056508,16057308	0.950413
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	193656743	193656757	193656743	+	RAMPAGE_only	2	3	10	0.273026	3.121928	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193648765	193659514	OPA1|ENST00000482865.1	+	193648765,193654861,193657079,193658886,193659481	193648871,193655027,193657232,193658995,193659514	0.700000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	188327348	188327376	188327375	+	RAMPAGE_only	3	3	9	0.245723	2.503258	chr3	188327364	188327567	SINE|MIR|MIRb	-	chr3	188239863	188406291	LPP|ENST00000457242.1	+	188239863,188406111	188240162,188406291	0.555556
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	92244945	92244950	92244949	-	High_confidence	4	4	9	0.245723	2.725481	chr7	92244870	92245026	DNA|hAT-Charlie|MER20B	+	chr7	92200357	92245795	KRIT1|ENST00000412043.6	-	92200357,92201306,92213194,92213891,92214610,92221901,92222821,92225719,92226525,92234448,92234807,92235402,92236412,92237666,92240992,92242033,92244001,92244901,92245426	92200804,92201423,92213401,92213979,92214777,92222053,92222978,92225827,92226682,92234592,92234923,92235646,92236542,92237759,92241152,92242137,92244149,92245171,92245795	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	75845927	75845978	75845933	+	High_confidence	192	194	406	11.084858	6.156542	chr5	75845925	75846048	SINE|Alu|AluSx3	-	chr5	75845785	75916124	MSTRG.17465.1	+	75845785,75906697	75848488,75916124	0.970443
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	78418456	78418476	78418471	+	RAMPAGE_only	3	3	10	0.273026	2.947703	chr4	78418467	78418559	SINE|Alu|AluJr	+	chr4	78057569	78446633	FRAS1|NM_001166133.1	+	78057569,78065984,78237509,78245232,78252391,78255241,78265024,78266833,78267240,78278654,78281397,78282819,78284404,78286404,78308065,78315593,78317367,78318809,78333271,78337673,78363512,78363907,78369837,78372717,78374110,78375738,78379725,78384058,78387374,78400733,78407662,78412968,78418948,78421862,78424387,78429094,78430291,78432356,78438569,78438901,78441161,78445521	78058085,78066016,78237617,78245325,78252551,78255375,78265108,78266935,78267432,78278744,78281433,78282967,78284548,78286539,78308209,78315734,78317508,78318986,78333412,78337817,78363665,78364054,78369984,78372858,78374251,78375879,78379996,78384143,78387701,78400887,78407841,78413085,78419063,78422000,78424420,78429226,78430417,78432604,78438718,78439064,78441297,78446633	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	69305922	69305949	69305922	-	RAMPAGE_only	2	2	8	0.218421	2.807355	chr9	69305474	69306161	LTR|ERV1|MER41-int	-	chr9	69296680	69307056	BANCR|NR_047671.2	-	69296680,69304935,69306147,69306853	69296867,69305077,69306290,69307056	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	30753025	30753043	30753025	+	RAMPAGE_only	91	92	183	4.996377	6.647019	chr22	30752589	30753102	LTR|ERV1|MER4D1	-	chr22	30764252	30907824	OSBP2|NM_001282740.1	+	30764252,30870428,30887425,30888222,30889179,30889489,30890727,30893121,30893462,30893637,30893816,30905836,30906196	30764392,30870682,30887618,30888340,30889234,30889636,30890973,30893242,30893566,30893733,30894001,30906069,30907824	0.852459
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	103129676	103129697	103129676	+	High_confidence	2	2	11	0.300329	2.646439	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	158172987	158173025	158173024	-	High_confidence	200	203	329	8.982557	6.547146	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.878419
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	21857619	21857642	21857619	-	RAMPAGE_only	10	10	19	0.518750	3.836592	chr12	21857469	21857941	LTR|ERVL-MaLR|MLT1D	+	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	0.842105
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	172958875	172958919	172958918	+	High_confidence	15	16	46	1.255920	4.425119	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.934783
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	44314281	44314312	44314305	-	RAMPAGE_only	11	11	56	1.528946	5.417723	chrX	44314142	44314275	LINE|L1|L1ME3Cz	-	chrX	44148664	44343672	EFHC2|ENST00000420999.1	-	44148664,44163921,44176291,44178366,44229648,44232480,44235304,44242120,44248271,44248802,44250193,44261074,44272685,44312567,44343546	44148896,44164027,44176384,44178564,44229779,44232677,44235447,44242289,44248410,44248916,44250445,44261298,44272836,44312756,44343672	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	113873339	113873347	113873346	-	High_confidence	3	3	7	0.191118	2.521641	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	82454161	82454162	82454161	+	RAMPAGE_only	9	9	11	0.300329	2.646439	chr15	82453833	82454361	LTR|ERVL-MaLR|MLT1F2	-	chr15	82459471	82470008	CSPG4P10|ENST00000456932.6	+	82459471,82461303,82466387,82467484,82469273,82469573,82469849	82459635,82464807,82466874,82467655,82469472,82469706,82470008	0.818182
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40360192	40360513	40360192	-	RAMPAGE_only	9	9	252	6.880257	6.031024	chr2	40360021	40360144	SINE|MIR|MIRb	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	59619894	59619923	59619894	+	High_confidence	1172	1284	3406	92.992677	5.941089	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.965355
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	30971762	30971806	30971805	+	High_confidence	4	4	13	0.354934	3.546594	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.846154
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	48683361	48683363	48683361	+	High_confidence	21	35	35	0.955591	4.256149	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.971429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	202582644	202582664	202582663	+	RAMPAGE_only	6	6	18	0.491447	3.572431	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	115194025	115194114	115194100	-	High_confidence	141	162	287	7.835848	6.906799	chr11	115194047	115194164	DNA?|DNA?|Eulor12	+	chr11	115176329	115194110	CADM1|ENST00000543375.5	-	115176329,115178643,115193837	115176592,115178775,115194110	0.567944
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	19487898	19487901	19487898	-	High_confidence	14	17	38	1.037499	3.394099	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.973684
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	18851319	18851339	18851319	-	RAMPAGE_only	2	2	10	0.273026	3.121928	chr8	18851147	18851332	SINE|MIR|MIRc	-	chr8	18594496	18854336	MSTRG.20854.11	-	18594496,18598434,18632612,18655641,18765448,18799294,18801269,18804521,18804703,18854097	18597101,18600434,18632806,18655685,18765538,18799353,18801382,18804602,18804898,18854336	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	57468821	57468900	57468896	+	RAMPAGE_only	12	13	56	1.528946	5.374055	chr15	57468704	57469072	LTR|ERVL-MaLR|THE1B	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.696429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	70324458	70324482	70324458	-	RAMPAGE_only	4	4	13	0.354934	2.855389	chr10	70324412	70324716	LTR|ERVL-MaLR|MLT1M	+	chr10	70298969	70376779	LRRC20|NM_001278213.1	-	70298969,70323862,70376451,70376728	70301508,70324030,70376596,70376779	0.923077
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	159231670	159231748	159231747	+	RAMPAGE_only	5	5	31	0.846381	3.339559	chr2	159231677	159231761	DNA|TcMar-Mariner|MARNA	-	chr2	159224392	159232659	TANC1|ENST00000496406.1	+	159224392,159229577	159228896,159232659	0.967742
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	20028652	20028672	20028671	+	High_confidence	2	3	7	0.191118	2.807355	chr1	20028464	20028814	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	2990740	2990749	2990748	-	RAMPAGE_only	13	14	25	0.682565	3.555533	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	68947559	68947560	68947559	-	High_confidence	8	10	11	0.300329	3.321928	chr14	68947337	68947577	SINE|MIR|MIRb	-	chr14	68910019	68947548	ACTN1|ENST00000553779.5	-	68910019,68912155,68921005,68925557,68947363	68910042,68912242,68921125,68925672,68947548	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40312987	40313177	40313176	-	RAMPAGE_only	26	27	165	4.504930	4.783481	chr2	40313018	40313574	LINE|L1|L1ME1	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	192714215	192714298	192714297	-	RAMPAGE_only	6	6	29	0.791776	4.282484	chr3	192714046	192714282	SINE|MIR|MIR	-	chr3	192645861	192723922	MSTRG.15939.9	-	192645861,192669730	192665066,192723922	0.931034
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40397153	40397779	40397644	-	RAMPAGE_only	16	17	610	16.654590	5.331686	chr2	40397607	40397686	DNA|hAT-Charlie|MER5B	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	127655803	127655872	127655803	+	RAMPAGE_only	4	5	20	0.546052	3.584184	chr4	127650220	127656245	LINE|L1|L1PA2	-	chr4	127632965	127716479	INTU|ENST00000503952.5	+	127632965,127643520,127656635,127663380,127669035,127674123,127684408,127685441,127687740,127700009,127704227,127705590,127706486,127708570,127710912,127713935,127716324	127633180,127644056,127656721,127663584,127669154,127674213,127684486,127685569,127687867,127700063,127704290,127705812,127706969,127708668,127711102,127714093,127716479	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	11193340	11193367	11193340	+	High_confidence	5	6	18	0.491447	3.616875	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.555556
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	96618692	96618717	96618692	-	High_confidence	11	12	32	0.873683	4.304229	chr10	96618614	96618797	SINE|MIR|MIR	-	chr10	96595564	96618788	PIK3AP1|ENST00000467625.5	-	96595564,96602279,96603978,96609711,96616638,96618650	96595634,96602398,96604049,96609867,96616711,96618788	0.812500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	65244454	65244455	65244454	-	RAMPAGE_only	6	6	9	0.245723	2.750000	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	47486752	47486781	47486752	-	High_confidence	3	3	13	0.354934	3.418296	chr11	47486415	47486707	SINE|Alu|AluSz6	-	chr11	47477295	47486799	CELF1|ENST00000422993.2	-	47477295,47478876,47482694,47484388,47486749	47477425,47478952,47482856,47484523,47486799	0.769231
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	81154211	81154253	81154221	-	High_confidence	5	5	16	0.436842	3.456565	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.937500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	17934766	17934767	17934766	+	RAMPAGE_only	15	15	18	0.491447	4.087463	chr8	17934728	17935264	LTR|Gypsy?|LTR85a	-	chr8	17937175	17939016	PCM1|ENST00000518985.1	+	17937175,17938838	17937379,17939016	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	38838166	38838181	38838180	+	RAMPAGE_only	11	13	20	0.546052	3.446439	chr8	38837795	38838224	LTR?|LTR?|MamRep605	+	chr8	38839283	38853028	TACC1|ENST00000519093.5	+	38839283,38842286,38843288,38846698,38847954	38840267,38842447,38843395,38846819,38853028	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	113758081	113758082	113758081	-	RAMPAGE_only	4	4	7	0.191118	2.584963	chr1	113758040	113758255	SINE|Alu|AluSq2	+	chr1	113697201	113759155	PHTF1|ENST00000393357.6	-	113697201,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113759155	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	202507016	202507101	202507092	+	RAMPAGE_only	10	13	56	1.528946	4.374173	chr1	202506853	202507167	DNA|hAT-Charlie|MER20B	+	chr1	202416830	202510865	MSTRG.2006.9	+	202416830,202422619,202425565,202427039,202428854,202430730,202431479,202434655,202437820,202440705,202442446,202445045,202448988,202488532,202493113,202495292,202495569,202496780,202501858	202416917,202422738,202425725,202427184,202428929,202430810,202431619,202434768,202438024,202440788,202442572,202445228,202463097,202488623,202493317,202495482,202495682,202496822,202510865	0.946429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	11963568	11963885	11963658	-	RAMPAGE_only	17	27	433	11.822029	6.233600	chr11	11963645	11963694	DNA|hAT-Ac|OldhAT1	-	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.963048
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	12522810	12522818	12522817	+	RAMPAGE_only	4	5	12	0.327631	2.751629	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40313921	40314516	40313921	-	RAMPAGE_only	23	28	572	15.617091	6.872157	chr2	40313700	40315286	LINE|L1|L1ME1	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.998252
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	127451092	127451122	127451107	-	High_confidence	2	2	8	0.218421	2.521641	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	15681317	15681542	15681500	+	RAMPAGE_only	6	7	113	3.085195	5.823912	chr5	15681110	15681632	LINE|L1|L1ME4a	+	chr5	15500381	15820400	MSTRG.17106.2	+	15500381,15615982,15733909	15500713,15733294,15820400	0.955752
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	6205508	6205524	6205518	+	High_confidence	25	25	54	1.474341	4.848124	chr1	6205476	6205750	SINE|Alu|AluSz	-	chr1	6205474	6208307	RNF207|ENST00000466994.5	+	6205474,6206195,6206535,6207378	6206101,6206302,6206726,6208307	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	32523132	32523134	32523132	-	RAMPAGE_only	5	8	12	0.327631	2.913977	chr13	32523108	32523404	SINE|Alu|AluSz6	+	chr13	32516893	32525579	N4BP2L2|ENST00000503814.1	-	32516893,32521372	32518003,32525579	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	18706991	18706997	18706991	-	High_confidence	5	5	9	0.245723	2.750000	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18705417	18706129	IGSF22|ENST00000510673.1	-	18705417,18705816	18705617,18706129	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	20674403	20674408	20674403	+	High_confidence	3	6	14	0.382236	3.521641	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	52236182	52236183	52236182	-	RAMPAGE_only	15	15	17	0.464144	3.452820	chr13	52235788	52236194	LINE|L1|L1PA16	+	chr13	52167708	52291557	AL158066.1|ENST00000451298.1	-	52167708,52169986,52171157,52175638,52180581,52183975,52186682,52189638,52223238,52227004,52229325,52233063,52235219,52253744,52253936,52258528,52279840,52280651,52280861,52283237,52289821,52291506	52169304,52170099,52171248,52175776,52180654,52184114,52186823,52189914,52223331,52227096,52229431,52233144,52235281,52253833,52254018,52258590,52279905,52280715,52280961,52283357,52289983,52291557	0.705882
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	32954320	32954321	32954320	-	RAMPAGE_only	5	5	8	0.218421	2.807355	chr10	32953969	32954360	LINE|L2|L2	+	chr10	32928149	32955663	ITGB1|ENST00000480226.5	-	32928149,32929821,32932514,32935491,32955569	32928264,32930044,32932600,32935558,32955663	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	3380960	3380961	3380960	+	High_confidence	8	8	9	0.245723	3.000000	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.555556
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40314916	40315129	40315128	-	RAMPAGE_only	10	10	112	3.057892	5.835917	chr2	40313700	40315286	LINE|L1|L1ME1	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.955357
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	102935855	102936007	102936006	+	RAMPAGE_only	6	10	58	1.583551	2.955006	chr5	102935933	102936732	DNA|hAT-Blackjack|MER63C	+	chr5	102865243	102949573	MSTRG.17690.12	+	102865243,102865822,102867272,102901355,102913933,102924956,102926584,102932610,102948377,102949536	102865272,102866284,102867393,102901413,102914021,102925042,102932457,102946885,102948445,102949573	0.965517
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	47351783	47351818	47351783	-	High_confidence	64	66	255	6.962165	6.999206	chr11	47351577	47351776	SINE|MIR|MIRb	-	chr11	47331396	47352702	MYBPC3|ENST00000545968.5	-	47331396,47331844,47332071,47332565,47332813,47333193,47333556,47333921,47335041,47335876,47337390,47337689,47338519,47339323,47339650,47341002,47341137,47341990,47342577,47342829,47343020,47343259,47343491,47346206,47346626,47347026,47347425,47347650,47347856,47348423,47349773,47350013,47350501,47351238,47352622	47331716,47331881,47332258,47332702,47332973,47333333,47333752,47334010,47335209,47336011,47337579,47337794,47338679,47339404,47339790,47341032,47341244,47342156,47342744,47342935,47343145,47343262,47343624,47346370,47346644,47347029,47347479,47347680,47347905,47348541,47349922,47350112,47350615,47351505,47352702	0.768627
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	35215994	35216025	35216024	-	RAMPAGE_only	3	4	12	0.327631	3.459432	chr7	35216002	35216114	LINE|L2|L2c	+	chr7	35192266	35254147	MSTRG.19852.4	-	35192266,35208919,35210392,35240878,35244948,35248676,35249950	35208645,35210257,35231580,35241037,35245057,35248841,35254147	0.916667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	57445376	57445406	57445405	+	RAMPAGE_only	5	5	24	0.655263	4.055958	chr4	57445252	57445423	SINE|MIR|MIR	-	chr4	57425871	57465986	LOC101928851|NR_125907.1	+	57425871,57426978,57427304,57434741,57464224,57465640	57426018,57427109,57427427,57434884,57464372,57465986	0.583333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40362726	40363295	40363015	-	RAMPAGE_only	54	55	1182	32.271681	4.997533	chr2	40362587	40363077	DNA|hAT-Charlie|MER20B	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.999154
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	6054548	6054631	6054548	-	RAMPAGE_only	2	2	24	0.655263	3.913977	chr7	6054207	6054503	SINE|Alu|AluSx1	-	chr7	6022246	6059229	EIF2AK1|NM_001134335.1	-	6022246,6026727,6028614,6028917,6037423,6038559,6040891,6042932,6044561,6046070,6046991,6048806,6049911,6054545,6058965	6024801,6026961,6028697,6029032,6037524,6038671,6041219,6042990,6044661,6046151,6047091,6048844,6050045,6054704,6059229	0.916667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	176943347	176943356	176943347	-	RAMPAGE_only	2	2	6	0.163816	2.584963	chr5	176943235	176943320	DNA|hAT-Charlie|Charlie10	-	chr5	176905065	176970793	UIMC1|ENST00000510698.2	-	176905065,176906010,176907113,176908522,176911310,176943334,176951473,176955958,176958092,176969600,176970741	176905492,176906047,176907177,176908694,176911389,176943488,176951577,176956035,176958154,176969706,176970793	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40610929	40610930	40610929	-	High_confidence	30	30	32	0.873683	4.640224	chr2	40610851	40611261	LTR|ERVL-MaLR|MSTB	-	chr2	40115249	40611053	SLC8A1|ENST00000405269.5	-	40115249,40139400,40160764,40164853,40174824,40177751,40428472,40610929	40115629,40139676,40160864,40164984,40174842,40177855,40430304,40611053	0.937500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40399934	40400108	40399934	-	RAMPAGE_only	4	4	88	2.402629	4.415994	chr2	40399802	40400263	LTR|ERV1|LTR2	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	31587190	31587252	31587201	+	High_confidence	14	18	55	1.501643	4.868326	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.963636
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	91179462	91179526	91179462	-	High_confidence	486	501	2575	70.304211	7.387285	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.930485
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	62815355	62815356	62815355	+	RAMPAGE_only	9	9	13	0.354934	3.251629	chr15	62815347	62815498	LINE|CR1|L3	+	chr15	62740444	62841486	TLN2|ENST00000489129.5	+	62740444,62748350,62750401,62752304,62753772,62761680,62762271,62763562,62766320,62770963,62776763,62781139,62783770,62792640,62796126,62797218,62800367,62800652,62805599,62809924,62819515,62820485,62833503,62835736,62835890,62838855,62840481	62740769,62748444,62750491,62752427,62755693,62761821,62762453,62763695,62766422,62771134,62776910,62781241,62783890,62792787,62796293,62797402,62800493,62800769,62805785,62810032,62819621,62820610,62833629,62835799,62836073,62838981,62841486	0.923077
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	112725738	112725798	112725738	+	RAMPAGE_only	7	9	38	1.037499	4.939183	chr13	112725697	112725770	LINE|CR1|L3b	+	chr13	112703286	112810699	ATP11A|ENST00000466946.5	+	112703286,112785134,112804956,112806212,112810618	112703342,112785257,112805046,112806293,112810699	0.578947
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	35259728	35259748	35259728	-	High_confidence	6	6	14	0.382236	3.546594	chr7	35259691	35259883	LINE|L2|L2a	-	chr7	35258380	35259729	AC009531.1|ENST00000442323.1	-	35258380,35259386	35258617,35259729	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	114624940	114625007	114625006	-	High_confidence	40	48	265	7.235191	6.063290	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.698113
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	151539315	151539354	151539334	-	RAMPAGE_only	3	3	15	0.409539	3.521641	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.533333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	174874418	174874441	174874418	+	RAMPAGE_only	3	3	9	0.245723	3.169925	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174700730	174990341	RABGAP1L|ENST00000469553.6	+	174700730,174702112,174752312,174811831,174877391,174957456,174957890,174969276,174976077,174978806,174982833,174988640,174989848	174700865,174702256,174752354,174811960,174877605,174957549,174958173,174969387,174976182,174978890,174982905,174988838,174990341	0.555556
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	150343962	150344001	150343967	-	RAMPAGE_only	11	19	41	1.119407	4.938998	chr4	150343906	150344175	LINE|L2|L2c	+	chr4	150264696	150487760	LRBA|ENST00000648878.1	-	150264696,150266398,150277852,150282449,150285932,150302624,150310228,150315560,150321190,150325808,150349991,150415437,150435588,150436723,150467672,150471623,150487731	150265812,150266441,150278004,150282646,150286034,150302792,150310384,150315623,150321383,150325898,150350159,150415590,150435708,150436864,150467785,150471739,150487760	0.560976
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	56157322	56157354	56157338	+	High_confidence	17	18	58	1.583551	4.315154	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.827586
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	91625854	91625906	91625870	-	RAMPAGE_only	3	3	18	0.491447	3.725481	chr10	91625801	91625981	LTR|ERVL-MaLR|MLT1L	+	chr10	91616973	91633054	MSTRG.2991.1	-	91616973,91628292	91625988,91633054	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	75248150	75248151	75248150	-	High_confidence	7	7	8	0.218421	2.521641	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	34860643	34860654	34860643	-	High_confidence	3	3	10	0.273026	3.121928	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	32075864	32075880	32075879	+	High_confidence	53	53	115	3.139800	5.853837	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32075835	32157216	MSTRG.6446.1	+	32075835,32076457,32090501,32117139,32146262,32149901,32152422,32154620	32076217,32076657,32094386,32117287,32146340,32150033,32152528,32157216	0.973913
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	123061182	123061328	123061256	-	High_confidence	13	15	155	4.231904	5.935708	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.948387
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	156252930	156252931	156252930	-	High_confidence	6	7	9	0.245723	3.169925	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.555556
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40319328	40319655	40319654	-	RAMPAGE_only	26	26	240	6.552626	5.541076	chr2	40319621	40319993	LINE|CR1|L3	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.991667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	20658568	20658608	20658607	+	High_confidence	10	15	60	1.638156	4.420770	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	49226371	49226372	49226371	-	RAMPAGE_only	31	31	40	1.092104	4.523986	chr18	49226227	49226538	LINE|RTE-BovB|MamRTE1	-	chr18	49043668	49460665	DYM|ENST00000442713.6	-	49043668,49097401,49118743,49163684,49257009,49258379,49272177,49281996,49286433,49391592,49430254,49460397	49044204,49097515,49118926,49163787,49257104,49258493,49272303,49282175,49286616,49391645,49430447,49460665	0.925000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	6590246	6590286	6590246	+	High_confidence	3	3	19	0.518750	3.787144	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	33838219	33838257	33838256	+	RAMPAGE_only	5	5	19	0.518750	3.997670	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.894737
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	30974856	30974879	30974862	-	RAMPAGE_only	6	6	26	0.709868	4.623517	chr10	30974767	30974948	SINE|MIR|MIR3	-	chr10	30844633	30984426	ZNF438|ENST00000361310.7	-	30844633,30848530,30876997,30908932,30910359,30941574,30984368	30845573,30850367,30877065,30909015,30910440,30941651,30984426	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	84091444	84091486	84091444	-	High_confidence	2	3	8	0.218421	2.750000	chr16	84091203	84091508	SINE|Alu|AluSq2	+	chr16	84070763	84091786	MBTPS1|ENST00000563231.5	-	84070763,84074596,84081746,84087357,84090874,84091731	84070776,84074741,84081908,84087460,84090942,84091786	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	69838803	69838819	69838807	+	High_confidence	3	4	11	0.300329	2.646439	chr16	69838688	69838832	LINE|CR1|X7A_LINE	+	chr16	69838736	69941741	WWP2|NM_001270453.1	+	69838736,69840125,69842023,69871803,69888038,69908760,69917708,69925429,69929447,69930129,69931151,69931508,69931801,69933969,69935852,69936311,69937117,69937547,69939026,69939340,69939840	69838889,69840263,69842120,69871931,69888249,69908850,69917883,69925484,69929529,69930258,69931227,69931580,69931890,69934129,69935986,69936452,69937238,69937652,69939123,69939413,69941741	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	126748971	126748998	126748971	+	RAMPAGE_only	27	27	78	2.129603	5.453420	chr3	126748776	126749205	LINE|L2|L2b	-	chr3	126730563	126960391	CHCHD6|ENST00000513253.1	+	126730563,126733077,126852646,126914679,126957424,126960195	126730630,126733222,126852730,126914750,126957551,126960391	0.717949
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	95590000	95590094	95590093	-	RAMPAGE_only	5	6	28	0.764473	4.249868	chr7	95589942	95590063	SINE|Alu|AluJr	-	chr7	95584374	95591987	MSTRG.20220.9	-	95584374,95585252,95587417,95587726	95585130,95587123,95587528,95591987	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	119803537	119803538	119803537	+	RAMPAGE_only	22	28	31	0.846381	4.573557	chr10	119803193	119803942	LINE|L1|L1M5	-	chr10	119750876	119828360	INPP5F|ENST00000647699.1	+	119750876,119781634,119791516,119791868,119792156,119796714,119797460,119798542,119804172,119805383,119806359,119807931,119810099,119811756,119820845,119822430,119823070,119823814,119826630	119751156,119781771,119791645,119792036,119792213,119796913,119797640,119798610,119804297,119805461,119806480,119808060,119810217,119811955,119820917,119822504,119823199,119823902,119828360	0.580645
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	237064060	237064095	237064094	+	RAMPAGE_only	3	3	14	0.382236	2.873141	chr1	237063324	237064612	LINE|L1|L1ME3A	-	chr1	237051334	237078092	MSTRG.2287.1	+	237051334,237056717	237056694,237078092	0.928571
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	77127872	77127877	77127872	+	High_confidence	91	91	140	3.822365	6.401550	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77194757	MSTRG.10200.25	+	77127872,77142645,77143566,77190802,77191187,77193420,77194676	77128087,77142750,77143659,77190952,77191312,77193549,77194757	0.657143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	144533090	144533106	144533105	+	RAMPAGE_only	2	3	8	0.218421	2.521641	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	96133626	96133645	96133626	+	RAMPAGE_only	2	3	7	0.191118	2.521641	chr10	96133568	96133657	DNA|TcMar-Tigger|Tigger12A	-	chr10	96130055	96163752	ZNF518A|ENST00000624776.3	+	96130055,96132585,96133555,96155325,96155923,96156196	96130118,96132670,96133648,96155398,96156047,96163752	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	32059169	32059191	32059169	+	High_confidence	1247	1285	2479	67.683161	5.792744	chr22	32059153	32059234	SINE|Alu|AluSz6	+	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	0.937475
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	76747933	76747936	76747935	+	RAMPAGE_only	3	5	7	0.191118	2.584963	chr17	76747916	76748199	LINE|L2|L2a	-	chr17	76738070	76778727	MFSD11|ENST00000590514.5	+	76738070,76738281,76738937,76740956,76741968,76742176,76743397,76744321,76754046,76767385,76769745,76774996,76776405,76778187	76738165,76738448,76738993,76741064,76742048,76742273,76743456,76744466,76754087,76767451,76769871,76775171,76776541,76778727	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	39809803	39809865	39809864	-	High_confidence	16	16	117	3.194405	4.517437	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.854701
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	40954688	40954701	40954700	+	High_confidence	6	6	16	0.436842	3.456565	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954710	41141048	LOC644919|NR_109758.1	+	40954710,40962789,40974339,41140833	40954952,40962842,40974390,41141048	0.562500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	39810023	39810094	39810033	-	High_confidence	64	64	252	6.880257	5.787168	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.920635
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	35164201	35164236	35164235	+	High_confidence	3	3	11	0.300329	2.846439	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	55101905	55101906	55101905	-	RAMPAGE_only	6	7	8	0.218421	2.750000	chr4	55101500	55101889	LINE|L1|L1PA10	-	chr4	55078530	55122921	KDR|ENST00000647068.1	-	55078530,55081955,55082535,55087606,55088867,55089373,55089690,55089955,55092616,55094801,55095576,55096228,55097661,55098136,55098696,55101896,55102361,55104642,55105831,55106686,55107736,55110402,55110653,55113303,55114125,55114873,55115280,55118603,55121096,55122841	55080163,55082041,55082635,55087758,55088973,55089473,55089802,55090078,55092714,55094955,55095665,55096342,55097766,55098272,55098803,55102028,55102508,55104984,55105940,55106810,55107893,55110566,55110768,55113481,55114265,55115042,55115411,55118800,55121190,55122921	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	80369552	80369575	80369568	+	High_confidence	2	2	10	0.273026	3.121928	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	47343912	47344137	47344096	-	RAMPAGE_only	14	16	248	6.771046	5.353761	chr11	47343777	47344071	SINE|Alu|AluSx	-	chr11	47331405	47352702	MSTRG.3756.2	-	47331405,47331844,47332071,47332565,47332813,47333193,47333556,47333921,47335041,47335876,47337390,47337689,47338519,47339323,47339650,47341002,47341137,47341990,47342577,47342829,47343020,47343259,47343491,47347026,47347425,47347650,47347856,47348423,47349773,47350013,47350501,47351238,47352622	47331716,47331881,47332258,47332702,47332973,47333333,47333752,47334010,47335209,47336011,47337579,47337794,47338679,47339404,47339790,47341032,47341244,47342156,47342744,47342935,47343145,47343262,47346644,47347029,47347479,47347680,47347905,47348541,47349922,47350112,47350615,47351505,47352702	0.995968
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	212440680	212440705	212440680	-	RAMPAGE_only	4	4	14	0.382236	3.392747	chr2	212440548	212446198	LTR|ERVL|HERVL-int	+	chr2	212192127	212538529	MSTRG.13178.12	-	212192127,212391649,212426361	212391609,212426275,212538529	0.928571
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	17935185	17935211	17935185	+	RAMPAGE_only	5	6	17	0.464144	3.625000	chr8	17934728	17935264	LTR|Gypsy?|LTR85a	-	chr8	17937175	17939016	PCM1|ENST00000518985.1	+	17937175,17938838	17937379,17939016	0.705882
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	52570323	52570325	52570323	+	RAMPAGE_only	5	7	11	0.300329	3.095795	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	105421010	105421124	105421012	-	RAMPAGE_only	18	28	137	3.740457	3.880061	chr2	105420629	105420965	DNA|hAT-Charlie|MER1B	-	chr2	105374634	105438503	MSTRG.12494.11	-	105374634,105399502,105402209	105386540,105402095,105438503	0.992701
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40320076	40320224	40320076	-	RAMPAGE_only	61	62	138	3.767760	5.774224	chr2	40319957	40320076	SINE|MIR|MIR	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.985507
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	55154500	55154605	55154554	-	High_confidence	9	9	65	1.774669	5.478232	chr19	55154488	55154610	LINE|L2|L2b	+	chr19	55151769	55154406	TNNI3|ENST00000589864.1	-	55151769,55154029	55151917,55154406	0.923077
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	159428332	159428373	159428356	-	RAMPAGE_only	5	11	37	1.010196	4.790270	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.594595
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	69306157	69306251	69306157	-	High_confidence	35	47	223	6.088481	4.809733	chr9	69305474	69306161	LTR|ERV1|MER41-int	-	chr9	69296680	69307056	BANCR|NR_047671.2	-	69296680,69304935,69306147,69306853	69296867,69305077,69306290,69307056	0.932735
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	46245724	46245736	46245724	-	RAMPAGE_only	16	21	61	1.665459	5.289435	chr22	46245708	46245947	LTR|ERVL-MaLR|MLT1J	+	chr22	46244010	46248285	CDPF1|ENST00000404583.5	-	46244010,46247124,46248171	46245238,46247221,46248285	0.622951
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	35229982	35230027	35229982	-	RAMPAGE_only	2	2	15	0.409539	3.378783	chr7	35229791	35230004	SINE|MIR|MIRc	-	chr7	35192266	35254147	MSTRG.19852.4	-	35192266,35208919,35210392,35240878,35244948,35248676,35249950	35208645,35210257,35231580,35241037,35245057,35248841,35254147	0.933333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40348185	40348558	40348274	-	RAMPAGE_only	12	12	276	7.535519	5.398651	chr2	40348150	40348333	SINE|MIR|MIR3	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.992754
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40342176	40342673	40342227	-	RAMPAGE_only	18	18	630	17.200642	6.388289	chr2	40341972	40342400	LTR|ERV1|LTR37B	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	113759894	113759895	113759894	-	High_confidence	5	5	8	0.218421	2.521641	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	53047224	53047225	53047224	+	RAMPAGE_only	9	9	13	0.354934	3.418296	chr1	53046851	53047387	LTR|ERVL-MaLR|MLT1E1A	-	chr1	53014973	53051610	SCP2|ENST00000488965.1	+	53014973,53027968,53047857	53015043,53028071,53051610	0.846154
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	79492556	79492616	79492595	+	High_confidence	6	6	33	0.900986	3.895420	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.939394
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	63791938	63791984	63791983	-	RAMPAGE_only	4	5	11	0.300329	3.277613	chr20	63791869	63792243	LTR|ERVL-MaLR|MLT1C	-	chr20	63743667	63790923	ZBTB46|ENST00000395104.5	-	63743667,63752685,63775677,63789820	63747301,63752861,63775962,63790923	0.818182
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	109380015	109380016	109380015	+	RAMPAGE_only	5	5	7	0.191118	2.807355	chr8	109378677	109380056	LTR|ERVL|ERVL-E-int	+	chr8	109362476	109531271	PKHD1L1|NM_177531.4	+	109362476,109364546,109381369,109382462,109384069,109385536,109388496,109389078,109390451,109394414,109396026,109398458,109400075,109401496,109404553,109404994,109406334,109408048,109409864,109412264,109413420,109419096,109420517,109425084,109427001,109429339,109429931,109433105,109435189,109436337,109438323,109438896,109440709,109441274,109442006,109442945,109443675,109444660,109448142,109449337,109450974,109452123,109452717,109454166,109454722,109456261,109459594,109461771,109464215,109466577,109475117,109476507,109477224,109479550,109479990,109481432,109482986,109485043,109486647,109489951,109490971,109491872,109493660,109496918,109497149,109498461,109498654,109504326,109507662,109508096,109510776,109515169,109518166,109522185,109522743,109523232,109526783,109530079	109362653,109364636,109381514,109382571,109384127,109385630,109388550,109389152,109390494,109394485,109396137,109398548,109400344,109401588,109404713,109405130,109406478,109408206,109409978,109412414,109413545,109419260,109420690,109425232,109427156,109429462,109430037,109433216,109435354,109436459,109438456,109439092,109440852,109441379,109442195,109443116,109443902,109445645,109448391,109449487,109451149,109452280,109452874,109454246,109454852,109456391,109459836,109461908,109465245,109466769,109475269,109476667,109477396,109479639,109480139,109481562,109483105,109485173,109486821,109490055,109491101,109491994,109493751,109497067,109497272,109498573,109498771,109504492,109507895,109508264,109510934,109515305,109518508,109522337,109522890,109523386,109527020,109531271	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	20658312	20658349	20658348	+	High_confidence	51	80	235	6.416112	5.304910	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.774468
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	139277014	139277042	139277041	-	RAMPAGE_only	2	3	7	0.191118	2.521641	chr6	139276958	139277168	SINE|MIR|MIRb	+	chr6	139240060	139281544	MSTRG.19350.23	-	139240060,139244594,139255563,139262578,139270455	139243314,139247909,139260437,139262773,139281544	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	20736882	20736918	20736882	-	RAMPAGE_only	2	3	11	0.300329	3.277613	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	89540785	89540806	89540805	+	High_confidence	40	41	114	3.112497	5.201790	chr16	89540610	89540963	LINE|L1|L1MD	+	chr16	89540631	89557535	SPG7|ENST00000642814.1	+	89540631,89544647,89546657,89548002,89550493,89552978,89553793,89554485,89556886	89541370,89544772,89546760,89548113,89550609,89553135,89553960,89554563,89557535	0.991228
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	105377209	105377333	105377270	-	RAMPAGE_only	5	8	51	1.392433	4.726059	chr2	105377178	105377332	LINE|L1|L1MB2	+	chr2	105374634	105438503	MSTRG.12494.11	-	105374634,105399502,105402209	105386540,105402095,105438503	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	7946875	7946898	7946878	+	High_confidence	6	6	17	0.464144	3.852169	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.941176
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	105420833	105420953	105420934	-	RAMPAGE_only	20	20	130	3.549339	4.474812	chr2	105420629	105420965	DNA|hAT-Charlie|MER1B	-	chr2	105374634	105438503	MSTRG.12494.11	-	105374634,105399502,105402209	105386540,105402095,105438503	0.992308
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	73475405	73475406	73475405	-	RAMPAGE_only	13	14	15	0.409539	3.324863	chr10	73475381	73475592	SINE|MIR|MIR	-	chr10	73436805	73482549	MSTRG.2878.2	-	73436805,73439871,73444724,73446491,73454411,73467552,73470686,73470886,73471069,73471467,73474918,73479316	73438420,73439901,73444822,73446573,73454489,73467678,73470781,73470964,73471209,73471613,73478623,73482549	0.866667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40469853	40470176	40469973	-	RAMPAGE_only	25	28	449	12.258870	5.793751	chr2	40469553	40470052	LINE|L1|L1MC5a	-	chr2	40097269	40512435	MSTRG.12053.6	-	40097269,40115371,40139400,40160764,40164853,40170280,40174705,40174824,40175260,40178386,40428472,40453160,40462284,40472685	40111316,40115629,40139676,40160864,40164984,40170349,40174720,40174842,40175281,40178493,40430304,40462149,40472652,40512435	0.997773
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	82143715	82143730	82143729	-	RAMPAGE_only	8	8	17	0.464144	3.452820	chr15	82143509	82143849	LINE|CR1|L3	+	chr15	82130219	82262528	EFL1|NM_001322845.1	-	82130219,82138657,82151464,82157712,82163852,82214716,82219651,82220077,82225164,82227449,82228190,82229033,82230847,82238306,82240417,82241269,82252690,82259087,82261687,82262136	82130561,82138842,82152423,82157860,82163984,82214855,82219818,82220229,82225264,82227572,82228327,82229110,82230971,82238521,82240555,82241403,82252775,82259155,82261797,82262528	0.941176
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	35207632	35207899	35207819	-	RAMPAGE_only	16	17	302	8.245387	5.434688	chr7	35206569	35208460	LINE|L1|L1ME1	-	chr7	35192266	35254147	MSTRG.19852.4	-	35192266,35208919,35210392,35240878,35244948,35248676,35249950	35208645,35210257,35231580,35241037,35245057,35248841,35254147	0.996689
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr21	28090297	28090340	28090339	+	High_confidence	7	7	21	0.573355	3.576618	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.809524
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	99892029	99892057	99892056	-	RAMPAGE_only	508	508	840	22.934189	5.071457	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.990476
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40368428	40369568	40368428	-	RAMPAGE_only	26	27	950	25.937476	7.726015	chr2	40368171	40368514	LINE|CR1|L3	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.996842
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	149887658	149887683	149887682	-	RAMPAGE_only	3	3	11	0.300329	3.277613	chr5	149887556	149888026	LTR|ERV1|LTR46	+	chr5	149857954	149944793	PDE6A|ENST00000617647.4	-	149857954,149859891,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647,149907311,149914942,149921634,149931027,149944199	149858530,149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149903695,149907378,149915007,149921709,149931168,149944793	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	39021125	39021156	39021155	+	High_confidence	6	6	19	0.518750	3.905765	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.947368
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	52570267	52570289	52570267	+	RAMPAGE_only	2	4	11	0.300329	3.095795	chr13	52569964	52570306	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.636364
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	102040714	102040758	102040717	+	RAMPAGE_only	33	34	88	2.402629	5.580067	chr7	102040765	102040912	SINE|MIR|MIR3	+	chr7	102097477	102125778	CUX1|ENST00000465461.7	+	102097477,102104335,102111697,102115206,102125527	102097501,102104459,102111774,102115273,102125778	0.886364
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	80148048	80148049	80148048	+	High_confidence	84	84	98	2.675655	5.797085	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.806122
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	79689354	79689355	79689354	+	High_confidence	7	7	8	0.218421	2.521641	chr5	79689238	79689475	SINE|MIR|MIRb	+	chr5	79689835	79800226	CMYA5|NM_153610.4	+	79689835,79728914,79743826,79745221,79747090,79752675,79758752,79761810,79763061,79788970,79790969,79793436,79799369	79690056,79739403,79743922,79745455,79747113,79752794,79758902,79761957,79763209,79789104,79791069,79793610,79800226	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	201363861	201363903	201363888	-	High_confidence	6	6	18	0.491447	4.087463	chr1	201363875	201364183	SINE|Alu|AluSp	-	chr1	201359007	201364188	TNNT2|ENST00000460780.5	-	201359007,201359622,201360452,201361912,201362385,201363295	201359255,201359663,201361369,201362022,201362394,201364188	0.944444
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	113183454	113183459	113183458	+	RAMPAGE_only	18	20	42	1.146709	4.782564	chr4	113182934	113184485	LINE|L2|L2a	-	chr4	113174415	113336656	ANK2|ENST00000634436.1	+	113174415,113196367,113199010,113232160,113236986,113237598,113240484,113242110,113249763,113255734,113258049,113258312,113264896,113274451,113277836,113278459,113282674,113287604,113288387,113292415,113293439,113302766,113311254,113313683,113317721,113318516,113330245,113331971,113333053,113335845,113336576	113174517,113196466,113199109,113232259,113237172,113237622,113240583,113242209,113249862,113255932,113258148,113258411,113264995,113274649,113277935,113278558,113282872,113287703,113288486,113292514,113293538,113302839,113311399,113313695,113317809,113318620,113330470,113332070,113333208,113336057,113336656	0.928571
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	1585021	1585022	1585021	-	RAMPAGE_only	4	4	6	0.163816	2.584963	chr5	1584920	1585091	LTR|ERVK|HERVK9-int	-	chr5	1571278	1594494	MSTRG.17050.2	-	1571278,1576178,1589246,1593112,1594394	1574295,1585133,1589365,1593284,1594494	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	52955040	52955041	52955040	+	RAMPAGE_only	17	17	17	0.464144	3.051602	chr6	52955078	52955376	SINE|Alu|AluSz6	+	chr6	52995619	52995950	RF00100|ENST00000365328.1	+	52995619	52995950	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	21833817	21833826	21833817	-	High_confidence	2	2	8	0.218421	2.750000	chr1	21833729	21833783	LINE|L2|L2c	-	chr1	21829992	21833577	HSPG2|ENST00000635682.1	-	21829992,21830981,21831214,21831462,21831651,21832494,21832874,21833267,21833466	21830091,21831090,21831324,21831562,21831796,21832606,21832892,21833384,21833577	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	57793708	57793744	57793743	+	RAMPAGE_only	2	2	7	0.191118	2.521641	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57781602	57796584	CTNND1|ENST00000530068.5	+	57781602,57791491,57794009,57795576,57796456	57781646,57791673,57794081,57795729,57796584	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	113918638	113918739	113918672	-	High_confidence	6	6	45	1.228617	4.715002	chr7	113918643	113918708	DNA|hAT-Ac|OldhAT1	-	chr7	113879770	113918996	PPP1R3A|ENST00000284602.1	-	113879770,113882038,113882261,113918214,113918818	113880125,113882163,113882320,113918297,113918996	0.777778
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	75465895	75466050	75465895	-	RAMPAGE_only	6	6	78	2.129603	4.862105	chr6	75465791	75466411	LINE|L2|L2a	+	chr6	75291858	75493629	MSTRG.18986.3	-	75291858,75312396,75353538,75362743,75414696,75442105	75295950,75315202,75353717,75362917,75414978,75493629	0.961538
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	214312633	214312655	214312633	+	RAMPAGE_only	6	6	19	0.518750	4.142664	chr1	214312302	214313119	LINE|L2|L2a	-	chr1	214327493	214331070	SMYD2|ENST00000484459.1	+	214327493,214330167,214330949	214327724,214330278,214331070	0.578947
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	29667464	29667465	29667464	-	RAMPAGE_only	8	8	9	0.245723	2.500000	chr17	29667384	29667678	DNA|hAT-Charlie|MER1B	+	chr17	29625794	29761390	MSTRG.9465.1	-	29625794,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29758368	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677741,29684684,29695523,29703062,29761390	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	94460553	94460591	94460564	+	RAMPAGE_only	4	4	26	0.709868	3.973661	chr4	94460474	94460640	SINE|Alu|FRAM	+	chr4	94451885	94588127	MSTRG.16528.5	+	94451885,94455246,94456243,94467560,94473167,94478944,94482878,94523723,94573350,94575942,94584985,94585564,94586407,94586988	94451995,94455384,94467380,94473071,94478191,94481639,94484054,94523875,94573393,94576034,94585003,94585737,94586444,94588127	0.923077
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	91462063	91462211	91462210	-	High_confidence	6	7	85	2.320722	4.662104	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.964706
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	54644248	54644249	54644248	+	RAMPAGE_only	12	12	12	0.327631	3.084963	chr1	54643772	54644368	LINE|L1|L1MDa	-	chr1	54548219	54710241	MSTRG.775.2	+	54548219,54548466,54584654,54585834,54592545,54593940,54594555,54597258,54599295,54601268,54602668,54603870,54604345,54605075,54607133,54607941,54630733,54652852,54665166,54668853,54670496,54670799,54673090,54673700,54678741,54679262,54679890,54682655,54686257,54692423,54695375,54700320,54701142,54702089,54702622,54706434,54709013,54709945	54548342,54548619,54584862,54585904,54592606,54594039,54594691,54597415,54599415,54601413,54602724,54603937,54604429,54605209,54607265,54608068,54651983,54654157,54665240,54668937,54670576,54670929,54673186,54674151,54678854,54679439,54680045,54682794,54686448,54692561,54695490,54700461,54701322,54702236,54702745,54706537,54709076,54710241	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	143070964	143070965	143070964	+	RAMPAGE_only	10	10	10	0.273026	2.921928	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143129313	143768352	ARHGAP15|ENST00000295095.10	+	143129313,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	140700445	140700452	140700445	+	High_confidence	808	1135	2066	56.407185	4.898027	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.981123
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	47637077	47637078	47637077	-	RAMPAGE_only	51	54	54	1.474341	3.797577	chr3	47637061	47637193	SINE|Alu|FLAM_A	-	chr3	46857866	46863483	MYL3|NM_000258.2	-	46857866,46858230,46858383,46859474,46860675,46860959,46863261	46858101,46858272,46858461,46859648,46860825,46860987,46863483	0.907407
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	166850123	166850125	166850123	+	RAMPAGE_only	8	10	15	0.409539	3.456565	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	168093050	168093065	168093055	-	High_confidence	16	16	63	1.720064	4.151944	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	11192762	11192801	11192800	+	High_confidence	4	6	13	0.354934	3.238901	chr7	11192822	11192883	LINE|L1|L1MA1	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.615385
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40379184	40379192	40379184	-	RAMPAGE_only	4	5	10	0.273026	2.921928	chr2	40379154	40379304	DNA|hAT-Charlie|MER5A	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	118512036	118512059	118512036	-	RAMPAGE_only	5	5	12	0.327631	3.084963	chr6	118511980	118512463	LINE|L1|L1MEc	+	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	83560311	83560369	83560363	-	RAMPAGE_only	6	7	26	0.709868	3.607887	chr9	83560161	83560431	LTR|ERVL-MaLR|MLT1H	+	chr9	83242989	83538546	FRMD3|ENST00000376438.5	-	83242989,83248054,83290602,83298747,83299111,83309535,83310484,83311886,83313659,83335515,83343189,83349678,83372912,83389603,83538084	83243215,83248516,83290727,83298816,83299186,83309624,83310548,83311975,83313747,83335639,83343287,83349757,83372955,83389708,83538546	0.961538
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	80301327	80301328	80301327	+	RAMPAGE_only	12	12	12	0.327631	3.584963	chr4	80301302	80301442	DNA|TcMar-Tigger|Tigger9b	+	chr4	80335719	80963756	C4orf22|NM_152770.2	+	80335719,80362753,80583092,80869992,80944809,80963516	80335879,80362884,80583183,80870135,80944939,80963756	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	102235398	102235417	102235416	-	High_confidence	4	4	10	0.273026	3.169925	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	50165370	50165426	50165423	+	High_confidence	4	5	25	0.682565	4.303509	chr17	50165337	50165958	LINE|L2|L2b	-	chr17	50165984	50175932	SGCA|NM_000023.3	+	50165984,50167367,50167581,50167946,50168373,50169091,50170142,50170639,50175256,50175711	50166077,50167487,50167736,50168019,50168572,50169254,50170351,50170666,50175449,50175932	0.920000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	118995520	118995550	118995520	+	RAMPAGE_only	4	4	11	0.300329	2.913977	chr8	118995452	118995608	SINE|MIR|MIR3	-	chr8	118952166	119108455	COLEC10|NM_001324095.1	+	118952166,119037435,119038054,119089679,119091148,119102347,119103799,119105799	118952378,119037603,119038150,119089751,119091220,119102401,119103895,119108455	0.545455
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	14945947	14945975	14945974	-	RAMPAGE_only	3	3	10	0.273026	3.169925	chr3	14945072	14946290	DNA|TcMar-Mariner|HSMAR1	-	chr3	14945023	14947494	MSTRG.14687.5	-	14945023,14947113	14946154,14947494	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	196377492	196377493	196377492	-	RAMPAGE_only	6	8	8	0.218421	2.750000	chr2	196377333	196377688	LTR|ERVL-MaLR|THE1B	-	chr2	196199250	196362222	HECW2|ENST00000647236.1	-	196199250,196215864,196217007,196220038,196220794,196222210,196225771,196228101,196240448,196242083,196253919,196257822,196271192,196274020,196278527,196292564,196306487,196307129,196307934,196317273,196318551,196322477,196324979,196329574,196334423,196343656,196361811	196201388,196215977,196217093,196220153,196220941,196222340,196225870,196228254,196240562,196242204,196254029,196257906,196271289,196274123,196278662,196292750,196306612,196307233,196308085,196317369,196319904,196322620,196325078,196329650,196334518,196343764,196362222	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	37737597	37737609	37737608	-	High_confidence	21	22	50	1.365130	4.673270	chr2	37737141	37737728	LINE|L1|L1MEc	+	chr2	37646483	37738468	CDC42EP3|ENST00000453555.1	-	37646483,37688078,37719537,37738358	37646822,37688175,37719944,37738468	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	202501676	202501700	202501699	+	RAMPAGE_only	3	3	8	0.218421	3.000000	chr1	202501630	202501711	SINE|MIR|MIRc	-	chr1	202448283	202502909	PPP1R12B|ENST00000498070.5	+	202448283,202448988,202488532,202493113,202495292,202495569,202496780,202501858	202448590,202449171,202488623,202493317,202495482,202495682,202496822,202502909	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	201427175	201427176	201427175	-	RAMPAGE_only	540	540	540	14.743407	6.529447	chr1	201427119	201427295	SINE|MIR|MIR	-	chr1	201408863	201429866	TNNI1|ENST00000336092.8	-	201408863,201410325,201411356,201413031,201414517,201415212,201417115,201417782,201421672,201427174,201428837,201429698	201409250,201410435,201411533,201413121,201414649,201415254,201417119,201417812,201421726,201427293,201429274,201429866	0.962963
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	144106344	144106383	144106364	+	High_confidence	2	2	12	0.327631	3.459432	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	201369986	201370005	201369986	-	RAMPAGE_only	2	2	6	0.163816	2.584963	chr1	201369918	201370169	SINE|MIR|MIRb	+	chr1	201360826	201373254	MSTRG.1990.15	-	201360826,201361912,201362385,201363295,201364297,201365190,201365609,201366837,201367770,201368161,201373213	201361369,201362022,201362394,201363406,201364375,201365307,201365670,201366871,201367806,201372155,201373254	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	53523862	53524086	53523963	-	High_confidence	90	95	388	10.593411	7.024166	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.878866
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	227758573	227758625	227758624	+	RAMPAGE_only	8	8	30	0.819078	3.881728	chr1	227758567	227758649	DNA|hAT-Charlie|MER3	-	chr1	227748153	227770744	SNAP47|ENST00000478768.2	+	227748153,227758994,227766958,227770570	227748233,227759485,227767083,227770744	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	6820183	6820212	6820197	+	RAMPAGE_only	5	6	15	0.409539	2.807355	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40378632	40379005	40379004	-	RAMPAGE_only	36	36	341	9.310189	6.007091	chr2	40378810	40379122	LINE|L2|L2a	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	29317802	29317816	29317802	-	High_confidence	2	2	6	0.163816	2.584963	chr12	29317690	29317914	SINE|MIR|MIRb	-	chr12	29280414	29317848	LOC100506606|NR_103860.1	-	29280414,29282163,29292214,29293065,29307849,29309770,29317707	29281542,29282360,29292328,29293540,29308044,29309903,29317848	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	74000281	74000300	74000298	+	RAMPAGE_only	3	6	11	0.300329	2.846439	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	67109609	67109646	67109609	-	RAMPAGE_only	3	5	17	0.464144	3.734522	chr10	67109562	67109863	SINE|Alu|AluY	+	chr10	67045672	67180443	MSTRG.2771.6	-	67045672,67128313,67171639	67128238,67171546,67180443	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	71002030	71002054	71002043	+	RAMPAGE_only	27	43	106	2.894076	5.870158	chr14	71001845	71002099	LTR|ERVL-MaLR|MLT1J	-	chr14	71013030	71110153	PCNX1|ENST00000554691.5	+	71013030,71019008,71023199,71026116,71026771,71028699,71033428,71033930,71036064,71045132,71046963,71047806,71050651,71051882,71055503,71073544,71076188,71088329,71089191,71101989,71103394,71105234,71108603,71109451,71109794	71013202,71019162,71023232,71026288,71026882,71028791,71033538,71034036,71036157,71045283,71047105,71047984,71050760,71052012,71055562,71073798,71076419,71088430,71089342,71102220,71103669,71105440,71109046,71109592,71110153	0.613208
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	18076304	18076305	18076304	-	High_confidence	7	8	9	0.245723	3.169925	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18066766	18076305	ASAH1|ENST00000637872.1	-	18066766,18069791,18071299,18075540,18076176	18067298,18069878,18071390,18075587,18076305	0.777778
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	62897430	62897431	62897430	+	High_confidence	15	15	19	0.518750	3.997670	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.526316
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	44912455	44912496	44912495	-	High_confidence	13	18	55	1.501643	5.281182	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.509091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	20031540	20031573	20031540	+	RAMPAGE_only	10	10	21	0.573355	4.297079	chr1	20031175	20034775	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	89272854	89272887	89272867	-	High_confidence	5	5	33	0.900986	4.116729	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	58421280	58421292	58421291	+	High_confidence	7	7	14	0.382236	3.378783	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421338	58462470	LINC02137|ENST00000561906.5	+	58421338,58435691,58461470,58462153	58421421,58435823,58461582,58462470	0.642857
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	23951347	23951372	23951371	+	High_confidence	5	5	18	0.491447	3.392147	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40371496	40371531	40371521	-	RAMPAGE_only	4	5	18	0.491447	3.852169	chr2	40371481	40371631	SINE|MIR|MIRb	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.944444
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	51289905	51289927	51289905	-	RAMPAGE_only	5	5	12	0.327631	2.913977	chr7	51289744	51289958	LINE|RTE-X|L4_C_Mam	+	chr7	51190997	51316471	COBL|ENST00000449281.1	-	51190997,51193378,51219740,51316378	51191078,51193589,51219944,51316471	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	107580245	107580267	107580264	+	High_confidence	1931	1931	9681	264.316531	7.339355	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618615	MSTRG.20362.7	+	107580264,107580758,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.952174
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	96934326	96934358	96934331	+	High_confidence	6	6	37	1.010196	4.516876	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96934049	97037515	MSTRG.17650.1	+	96934049,96935993,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96934499,96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.918919
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr21	37083874	37083896	37083895	+	High_confidence	3	3	11	0.300329	3.095795	chr21	37083879	37084118	DNA|hAT-Charlie|MER113B	+	chr21	37083625	37093402	TTC3|ENST00000484047.5	+	37083625,37087246,37087832,37088798,37090232,37091292,37093308	37084331,37087401,37088346,37088886,37090286,37091626,37093402	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	47067498	47067534	47067498	-	High_confidence	559	598	2109	57.581197	6.088469	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.913229
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	18707030	18707033	18707032	-	High_confidence	8	13	14	0.382236	3.392747	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18705417	18706129	IGSF22|ENST00000510673.1	-	18705417,18705816	18705617,18706129	0.642857
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	149229360	149229374	149229367	-	RAMPAGE_only	80	86	287	7.835848	6.092670	chr1	149229335	149229457	SINE|MIR|MIR3	+	chr1	149179148	149263607	MSTRG.1408.4	-	149179148,149195624,149198360,149201013,149240376	149195022,149198171,149198484,149201090,149263607	0.979094
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	102234630	102234650	102234649	-	High_confidence	4	4	11	0.300329	3.277613	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102229432	102235063	MOK|ENST00000522537.5	-	102229432,102232534,102233687,102234956	102229657,102232708,102233789,102235063	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	69525984	69526017	69526016	-	High_confidence	53	56	214	5.842758	4.308012	chr4	69525819	69526138	SINE|Alu|AluY	+	chr4	69480164	69526014	UGT2B4|NM_001297616.1	-	69480164,69485207,69486608,69489438,69493692,69495140,69525686	69480910,69485427,69486696,69489570,69493841,69495410,69526014	0.883178
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	182928788	182928789	182928788	-	RAMPAGE_only	11	12	17	0.464144	3.625000	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.647059
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	36850349	36850372	36850371	+	High_confidence	6	7	29	0.791776	4.351823	chr19	36850362	36850429	LTR|ERV1|MER67D	-	chr19	36850360	36879572	ZNF345|ENST00000589046.1	+	36850360,36851727,36876784	36850515,36851904,36879572	0.551724
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	32402135	32402136	32402135	+	RAMPAGE_only	10	10	10	0.273026	3.121928	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32433163	32439032	AKAP6|ENST00000554449.1	+	32433163,32438673	32433817,32439032	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	130978738	130978739	130978738	-	High_confidence	78	80	112	3.057892	5.397542	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.821429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40349495	40349648	40349602	-	RAMPAGE_only	7	7	72	1.965788	4.957197	chr2	40349457	40349669	SINE|MIR|MIRb	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.986111
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	89479889	89479890	89479889	-	High_confidence	15	15	15	0.409539	3.640224	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	58578123	58578156	58578132	-	High_confidence	20	29	104	2.839471	5.911163	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.519231
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	168532454	168532504	168532468	+	RAMPAGE_only	2	2	20	0.546052	3.892407	chr4	168532294	168533070	LINE|L1|HAL1ME	+	chr4	168497123	168572861	MSTRG.16951.5	+	168497123,168511422,168516511	168497194,168516451,168572861	0.950000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	232553338	232553343	232553342	-	RAMPAGE_only	13	13	26	0.709868	3.829275	chr1	232552807	232553528	LTR|ERV1|LTR1F1	-	chr1	232397964	232561558	SIPA1L2|ENST00000366630.5	-	232397964,232402391,232403447,232404124,232415493,232425588,232428410,232432246,232439107,232441290,232441767,232443601,232445528,232460886,232464839,232471370,232479626,232483791,232490873,232493526,232513856,232561468	232399273,232402473,232403571,232404178,232415625,232425808,232428564,232432471,232439496,232441394,232441868,232443685,232445786,232461161,232465416,232471528,232479730,232483966,232491062,232493660,232515608,232561558	0.653846
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	20818666	20818705	20818704	-	RAMPAGE_only	5	6	18	0.491447	3.690117	chr10	20818659	20818779	LINE|L2|L2b	+	chr10	20779972	20897215	MSTRG.2487.1	-	20779972,20787201,20808509,20809805,20812768,20813938,20815624,20817599,20823207,20826446,20828529,20831195,20831472,20835512,20840738,20845257,20850394,20852544,20858239,20859712,20868663,20869739,20880793,20888096,20889844,20896957,20897124	20785923,20787308,20808659,20809898,20812940,20814043,20815717,20819516,20823300,20826539,20828634,20831306,20831583,20835623,20840849,20845368,20850502,20852649,20858344,20859826,20868765,20869841,20880904,20888207,20889949,20897029,20897215	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	106893766	106893785	106893779	-	RAMPAGE_only	4	4	10	0.273026	2.725481	chr11	106893543	106894157	LINE|L1|L1MC1	+	chr11	106687374	107018151	GUCY1A2|ENST00000347596.2	-	106687374,106708511,106776438,106809992,106936649,106939459,106978618,106986069,107017752	106687756,106708666,106776582,106810478,106936712,106940178,106978740,106986131,107018151	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	200889060	200889318	200889293	-	High_confidence	89	90	876	23.917083	7.048653	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.707763
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	9170106	9170109	9170106	-	High_confidence	3	3	8	0.218421	2.807355	chr12	9170008	9176475	LINE|L1|L1PA11	+	chr12	9168455	9170118	PZP|ENST00000546116.1	-	9168455,9169429,9170048	9168974,9169591,9170118	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	147172973	147172976	147172975	+	High_confidence	5	7	9	0.245723	3.169925	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	8788252	8788253	8788252	+	High_confidence	28	28	30	0.819078	4.351823	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.866667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	39026127	39026151	39026130	+	High_confidence	8	9	26	0.709868	4.363713	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	44439927	44439937	44439927	-	High_confidence	2	2	8	0.218421	2.521641	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421126	44439917	C3orf86|ENST00000636468.1	-	44421126,44439796	44421813,44439917	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	62256009	62256031	62256028	+	RAMPAGE_only	17	18	48	1.310525	4.922750	chr3	62256056	62256244	SINE|MIR|MIRc	+	chr3	62243575	62267813	PTPRG|ENST00000485215.5	+	62243575,62255123,62262797,62267409,62267684	62243898,62255215,62262894,62267492,62267813	0.583333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	30812385	30812477	30812453	-	High_confidence	6	6	56	1.528946	4.907922	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.964286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	167934687	167934717	167934687	+	High_confidence	3	3	12	0.327631	3.459432	chr5	167934647	167934759	DNA|hAT-Ac|OldhAT1	-	chr5	167934861	168264147	MSTRG.18175.6	+	167934861,167952587,167992943,168047426,168062059,168090573,168098025,168118291,168124849,168126753,168162610,168190336,168195175,168198852,168199863,168203688,168204371,168211733,168215039,168216767,168218124,168226087,168227894,168244419,168246756,168260282,168262048	167934920,167952822,167993182,168047549,168062265,168090769,168098127,168118486,168125050,168126966,168162757,168190547,168195295,168199114,168200131,168203832,168204621,168211754,168215272,168216922,168218999,168226263,168228130,168244716,168248371,168260413,168264147	0.916667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40470250	40470334	40470333	-	RAMPAGE_only	8	9	45	1.228617	4.863749	chr2	40470247	40470762	LINE|L1|L1ME4a	+	chr2	40097269	40512435	MSTRG.12053.6	-	40097269,40115371,40139400,40160764,40164853,40170280,40174705,40174824,40175260,40178386,40428472,40453160,40462284,40472685	40111316,40115629,40139676,40160864,40164984,40170349,40174720,40174842,40175281,40178493,40430304,40462149,40472652,40512435	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	35222879	35222962	35222961	-	RAMPAGE_only	7	9	60	1.638156	5.050111	chr7	35222672	35223414	LINE|L2|L2	-	chr7	35192266	35254147	MSTRG.19852.4	-	35192266,35208919,35210392,35240878,35244948,35248676,35249950	35208645,35210257,35231580,35241037,35245057,35248841,35254147	0.983333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	17282811	17282915	17282811	+	RAMPAGE_only	7	10	62	1.692762	5.270897	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17331523	MSTRG.3578.15	+	17277022,17282788,17295323,17296103,17301743,17309571,17310824,17311192,17311871,17312027,17315385,17330126,17330901,17331411	17277095,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17331523	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	123179199	123179221	123179220	-	RAMPAGE_only	4	6	9	0.245723	3.000000	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.777778
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	51282240	51282259	51282258	-	RAMPAGE_only	4	4	11	0.300329	3.321928	chr15	51282243	51282688	LTR|ERVK|LTR14B	+	chr15	51222482	51318492	CYP19A1|ENST00000559646.1	-	51222482,51227778,51236858,51242767,51318432	51222525,51227933,51237009,51242950,51318492	0.545455
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40453684	40453740	40453739	-	High_confidence	10	11	32	0.873683	4.502583	chr2	40453711	40453851	DNA|hAT-Charlie|MER5A1	-	chr2	40430019	40453438	SLC8A1|ENST00000455476.5	-	40430019,40453160	40430304,40453438	0.718750
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	178798953	178799093	178798953	-	RAMPAGE_only	2	3	27	0.737170	4.517559	chr2	178798829	178798924	SINE|MIR|MIRc	-	chr2	178798494	178807408	TTN|ENST00000470257.1	-	178798494,178799824,178800394,178802137,178804551,178807211	178799731,178799910,178800682,178802341,178804655,178807408	0.629630
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	135965718	135965762	135965748	+	High_confidence	116	122	605	16.518077	6.510229	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	34301604	34301607	34301604	-	RAMPAGE_only	6	6	13	0.354934	3.546594	chr6	34301277	34301774	LTR|ERVL-MaLR|MLT1H	+	chr6	34279678	34392674	NUDT3|ENST00000607016.1	-	34279678,34293450,34295640,34341861,34392263	34288931,34293535,34295685,34341972,34392674	0.846154
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	103129616	103129651	103129650	+	High_confidence	2	2	9	0.245723	2.947703	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	182030747	182030774	182030773	+	High_confidence	4	4	12	0.327631	3.188722	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.916667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40327348	40327875	40327348	-	RAMPAGE_only	14	24	442	12.067752	6.092688	chr2	40327012	40327457	LINE|L1|L1ME4c	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	212386294	212386322	212386294	-	RAMPAGE_only	3	3	9	0.245723	2.500000	chr2	212386179	212386331	LINE|L2|L2c	+	chr2	212192127	212538529	MSTRG.13178.12	-	212192127,212391649,212426361	212391609,212426275,212538529	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	63617794	63617852	63617832	-	High_confidence	20	23	114	3.112497	6.302543	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63181618	63618046	MSTRG.8728.1	-	63181618,63334599,63531224,63617692	63305420,63334667,63531304,63618046	0.517544
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	45292796	45292828	45292808	+	High_confidence	2	2	11	0.300329	3.121928	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	121383339	121383374	121383339	-	RAMPAGE_only	2	2	10	0.273026	3.121928	chr7	121383306	121383450	SINE|MIR|MIR3	-	chr7	121360091	121396308	FAM3C|ENST00000426156.1	-	121360091,121362896,121364129,121371299,121372109,121378909,121380208,121382956,121396161	121360127,121362947,121364188,121371423,121372139,121379014,121380264,121383010,121396308	0.700000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	147517874	147517875	147517874	-	High_confidence	13	15	17	0.464144	3.452820	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147258884	147517875	LINC00624|ENST00000619867.4	-	147258884,147384667,147408589,147514337,147515520,147517442	147260976,147384863,147408689,147514448,147515676,147517875	0.941176
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	650742	650743	650742	-	RAMPAGE_only	5	5	8	0.218421	2.807355	chr7	650714	650757	SINE|MIR|MIRc	-	chr7	596179	691794	PRKAR1B|ENST00000414568.5	-	596179,606192,607390,677228,680555,691539	596304,606239,607452,677320,680726,691794	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	60182444	60182471	60182444	-	High_confidence	2	3	7	0.191118	2.521641	chr11	60182383	60182456	SINE|MIR|MIRb	-	chr11	60172014	60183040	MS4A6A|ENST00000420732.6	-	60172014,60173027,60175505,60178259,60179830,60181580,60182977	60172253,60173129,60175611,60178316,60179965,60181741,60183040	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	61113767	61113770	61113769	+	RAMPAGE_only	3	5	7	0.191118	2.521641	chr2	61112792	61114110	LINE|L1|L1ME1	-	chr2	61115786	61164825	AC016747.4|ENST00000462959.2	+	61115786,61117356,61117466,61118027,61134136,61162841,61163051,61164353	61116070,61117385,61117540,61118116,61134276,61162955,61163232,61164825	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	178267392	178267410	178267402	-	RAMPAGE_only	5	5	20	0.546052	4.021928	chr5	178267373	178267564	SINE|MIR|MIR	-	chr5	178237619	178306934	COL23A1|ENST00000407622.2	-	178237619,178239140,178242041,178242340,178245941,178246253,178246390,178247525,178247774,178248191,178249116,178250060,178252543,178254948,178256352,178256865,178257522,178259720,178261721,178262216,178263207,178267306,178268729,178270336,178306874	178238700,178239179,178242128,178242394,178245968,178246307,178246453,178247552,178247831,178248254,178249206,178250105,178252597,178255026,178256397,178256928,178257567,178259747,178261748,178262252,178263324,178267333,178268756,178270372,178306934	0.850000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	47779740	47779772	47779768	+	High_confidence	2	2	9	0.245723	2.725481	chr19	47779522	47779824	SINE|Alu|AluJo	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	108768164	108768220	108768204	+	RAMPAGE_only	2	2	13	0.354934	3.700440	chr5	108768042	108768250	LINE|CR1|L3b	-	chr5	108748966	108843001	FER|ENST00000502752.1	+	108748966,108768092,108782662,108798123,108832769,108835707,108841830,108842261	108748993,108768238,108782755,108798389,108832943,108835807,108841868,108843001	0.923077
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	91197481	91197482	91197481	+	RAMPAGE_only	12	12	17	0.464144	3.500000	chr8	91191844	91197868	LINE|L1|L1PA3	-	chr8	91209493	91395649	SLC26A7|ENST00000522181.5	+	91209493,91218889,91249618,91289135,91295530,91318215,91334294,91340403,91343352,91351809,91352900,91362352,91363471,91366579,91369784,91389337,91393796,91393935,91395061	91209542,91219005,91249844,91289246,91295703,91318380,91334447,91340551,91343466,91351887,91352996,91362459,91363538,91366717,91369833,91389438,91393851,91394039,91395649	0.647059
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	6208681	6208682	6208681	-	High_confidence	84	84	84	2.293419	3.762538	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.976190
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	2100978	2101027	2101026	+	RAMPAGE_only	4	4	18	0.491447	3.969816	chr8	2101063	2101381	SINE|Alu|AluSx1	+	chr8	2045068	2145455	MYOM2|ENST00000523438.1	+	2045068,2090007,2092345,2093969,2096246,2098856,2100875,2102666,2106241,2106490,2108785,2109394,2115959,2116215,2117884,2123251,2123554,2124178,2129126,2140722,2141140,2142374,2143400,2144663	2045168,2090191,2092520,2094091,2096434,2098983,2101054,2102781,2106398,2106597,2108830,2109531,2116104,2116275,2117952,2123365,2123642,2124217,2129232,2140886,2141177,2142397,2143456,2145455	0.944444
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	174410019	174410040	174410019	+	High_confidence	7	7	15	0.409539	3.589898	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410081	174427895	SCRN3|ENST00000549848.5	+	174410081,174422884,174424474,174427712	174410503,174423047,174424649,174427895	0.733333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	2867798	2867851	2867835	+	High_confidence	13	13	38	1.037499	4.787144	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.973684
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	65432195	65432212	65432211	+	RAMPAGE_only	4	6	14	0.382236	3.392747	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.928571
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	196475707	196475716	196475715	-	RAMPAGE_only	11	11	20	0.546052	3.932138	chr2	196475448	196475831	LTR|ERVL-MaLR|MLT1K	-	chr2	196199336	196586729	HECW2|ENST00000644256.1	-	196199336,196215864,196217007,196220038,196220794,196222210,196225771,196228101,196240448,196242083,196253919,196257822,196271192,196274020,196278527,196292564,196306487,196307129,196307934,196317273,196318551,196320338,196322477,196324979,196329574,196334423,196343656,196433131,196586507	196201388,196215977,196217093,196220153,196220941,196222340,196225870,196228254,196240562,196242204,196254029,196257906,196271289,196274123,196278662,196292750,196306612,196307233,196308085,196317369,196319904,196320439,196322620,196325149,196329650,196334518,196343764,196433458,196586729	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	4355592	4355593	4355592	-	High_confidence	245	246	246	6.716441	5.174068	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.971545
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	63584658	63584759	63584728	-	RAMPAGE_only	4	5	44	1.201315	4.256058	chr12	63584408	63585120	DNA|TcMar-Tigger|MER44C	+	chr12	63560350	63668542	MSTRG.5237.6	-	63560350,63569223,63570757,63580661,63582405,63583811,63594086,63595965,63597808,63600305,63608615,63617303,63618150,63621237,63626468,63644402,63647244,63661343,63665834,63668056	63560662,63569349,63570857,63580836,63582525,63586180,63594133,63596037,63597910,63600386,63608675,63617390,63618228,63621337,63626526,63644496,63647365,63661481,63665859,63668542	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	98943307	98943309	98943308	+	High_confidence	6	11	12	0.327631	3.459432	chr9	98943193	98943308	LINE|L2|L2a	-	chr9	98943495	99070792	MSTRG.22099.2	+	98943495,98943954,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98943628,98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	102946655	102946691	102946671	+	RAMPAGE_only	4	5	15	0.409539	3.521641	chr5	102946665	102946726	SINE|MIR|MIRc	+	chr5	102866115	103029165	PAM|ENST00000455264.6	+	102866115,102867272,102901355,102913933,102924956,102926584,102946836,102948377,102949536,102949901,102950716,102959874,102961157,102974115,102990271,103003032,103005153,103006800,103007456,103009750,103017333,103019789,103028184,103028886	102866284,102867393,102901413,102914021,102925042,102926668,102946885,102948445,102949617,102949978,102950820,102960059,102961229,102974436,102990401,103003149,103005226,103007011,103007657,103009866,103017433,103019843,103028238,103029165	0.733333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	37508828	37508846	37508845	-	High_confidence	3	3	11	0.300329	2.921928	chr22	37508777	37508913	SINE|MIR|MIRc	+	chr22	37490363	37509149	CARD10|ENST00000406271.7	-	37490363,37491754,37492434,37492643,37494085,37495516,37495759,37496448,37497018,37502601,37503184,37504185,37504634,37506191,37507828,37508526,37509007	37491393,37491867,37492550,37492802,37494188,37495586,37496003,37496560,37497178,37502725,37503213,37504301,37504769,37506383,37507954,37508682,37509149	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	102822458	102822465	102822458	-	RAMPAGE_only	12	16	38	1.037499	4.993237	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.605263
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40321613	40321674	40321673	-	RAMPAGE_only	5	6	24	0.655263	3.663533	chr2	40321470	40321842	LTR|ERVL-MaLR|THE1C	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.916667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	20028614	20028624	20028614	+	High_confidence	4	5	11	0.300329	3.277613	chr1	20028464	20028814	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.545455
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	237134749	237134777	237134776	+	RAMPAGE_only	3	5	14	0.382236	3.334679	chr1	237134771	237134957	SINE|MIR|MIR	-	chr1	237051334	237208919	MSTRG.2287.2	+	237051334,237056808,237100537	237056694,237066885,237208919	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	38567970	38568012	38567970	-	High_confidence	17	17	63	1.720064	4.593579	chr22	38567953	38568045	DNA|hAT|MamRep38	-	chr22	38518948	38568409	DMC1|ENST00000428462.6	-	38518948,38521607,38537591,38538294,38538538,38552665,38555356,38562286,38566589,38567582,38568205	38520089,38521724,38537652,38538409,38538612,38552707,38555409,38562369,38566736,38567627,38568409	0.873016
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	95399331	95399408	95399390	-	RAMPAGE_only	3	3	22	0.600657	3.984184	chr10	95399346	95399491	DNA|hAT-Charlie|MER58A	+	chr10	95384050	95413764	SORBS1|ENST00000465489.1	-	95384050,95384237,95397219,95399016,95406117,95410632,95413552	95384114,95384285,95397283,95399189,95406147,95410777,95413764	0.772727
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	12514043	12514060	12514054	+	RAMPAGE_only	5	5	17	0.464144	3.734522	chr3	12513979	12514484	LINE|L2|L2b	-	chr3	12529778	12539288	TSEN2|ENST00000455118.5	+	12529778,12531569,12532661,12538801	12529873,12531659,12532773,12539288	0.705882
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	28138306	28138451	28138306	-	RAMPAGE_only	8	8	68	1.856577	4.940954	chr18	28138305	28138410	LINE|CR1|CR1-11_Crp	+	chr18	28009803	28177973	MSTRG.10482.4	-	28009803,28011845,28013682,28097062,28104872,28176962	28009872,28011992,28013909,28104587,28147784,28177973	0.985294
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	31376356	31376357	31376356	-	High_confidence	193	200	200	5.460521	4.390452	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.880000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40491583	40491663	40491603	-	RAMPAGE_only	9	11	49	1.337828	5.194236	chr2	40491167	40491820	LINE|L1|L1PA3	-	chr2	40097269	40512435	MSTRG.12053.6	-	40097269,40115371,40139400,40160764,40164853,40170280,40174705,40174824,40175260,40178386,40428472,40453160,40462284,40472685	40111316,40115629,40139676,40160864,40164984,40170349,40174720,40174842,40175281,40178493,40430304,40462149,40472652,40512435	0.979592
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	171936249	171936265	171936249	+	RAMPAGE_only	9	18	36	0.982894	4.183542	chr2	171935907	171936640	LINE|L2|L2	-	chr2	171922606	171983623	HAT1|ENST00000494601.5	+	171922606,171925536,171946707,171952880,171965337,171965786,171966408,171966842,171976156,171979246,171983184	171924927,171925641,171946783,171953001,171965517,171965908,171966513,171966949,171976308,171979363,171983623	0.972222
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	119179272	119179297	119179296	+	High_confidence	19	19	47	1.283222	3.391109	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.978723
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	55280217	55280251	55280217	-	High_confidence	5	9	26	0.709868	3.224881	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	174410324	174410330	174410329	+	High_confidence	4	4	8	0.218421	2.521641	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	91796496	91796511	91796496	+	RAMPAGE_only	2	2	7	0.191118	2.584963	chr10	91796343	91796573	DNA|hAT-Charlie|MER1A	-	chr10	91798311	91865276	TNKS2|ENST00000371627.4	+	91798311,91812982,91817133,91819269,91819481,91819938,91822295,91827016,91828284,91830922,91831102,91833852,91836918,91840560,91841282,91842171,91844918,91845751,91848382,91849511,91851215,91855028,91855613,91857424,91859461,91861998,91862936	91798889,91813207,91817229,91819306,91819557,91820033,91822362,91827203,91828406,91831014,91831181,91834024,91836998,91840706,91841448,91842391,91845028,91845940,91848635,91849594,91851336,91855126,91855688,91857530,91859648,91862155,91865276	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	3131642	3131655	3131642	-	RAMPAGE_only	2	2	7	0.191118	2.584963	chr18	3131624	3131743	SINE|Alu|AluJr	-	chr18	3119971	3129581	MYOM1|ENST00000582016.1	-	3119971,3126700,3129231	3119995,3126897,3129581	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	44833605	44833611	44833610	+	RAMPAGE_only	13	14	27	0.737170	3.950064	chr3	44833211	44833733	DNA|hAT-Charlie|MER1A	-	chr3	44814970	44853254	KIF15|ENST00000453693.1	+	44814970,44826038,44826374,44826995,44827458,44828213,44829970,44830895,44838274,44840354,44841073,44843124,44847984,44848520,44851786,44852207,44852672	44815076,44826189,44826460,44827193,44827528,44828300,44830075,44831018,44838421,44840456,44841238,44843234,44848057,44848558,44851952,44852339,44853254	0.962963
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	141112968	141113268	141113035	-	RAMPAGE_only	7	8	152	4.149996	5.965596	chr4	141112167	141113237	LINE|L1|L1PA7	-	chr4	140859806	141132842	MSTRG.16794.2	-	140859806,140911143,140925976,140947653,140949300,140967622,141053665,141079018,141118991	140868379,140911354,140926073,140947736,140949372,140967873,141078546,141118919,141132842	0.993421
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	100897920	100897921	100897920	+	High_confidence	7	7	8	0.218421	2.807355	chr14	100897872	100897994	LINE|L1|L1ME5	+	chr14	100897797	100947076	MSTRG.7037.55	+	100897797,100906097,100906935,100916678,100938879,100940364,100942761,100944808,100947033	100899085,100906163,100916658,100937488,100938956,100940450,100942838,100944872,100947076	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	71379947	71379958	71379947	+	High_confidence	2	3	7	0.191118	2.521641	chr2	71379856	71379996	DNA|TcMar-Tigger|MER44D	+	chr2	71380175	71398757	ZNF638|ENST00000491843.2	+	71380175,71380512,71380837,71396140,71398700	71380280,71380565,71380903,71396191,71398757	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	20423696	20423704	20423703	-	RAMPAGE_only	18	32	62	1.692762	4.879172	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.677419
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	106278172	106278283	106278184	+	High_confidence	16	18	94	2.566445	6.045887	chr9	106277947	106278267	LINE|RTE-X|L4_C_Mam	+	chr9	106278391	106604795	LINC01505|ENST00000435485.5	+	106278391,106279100,106499486,106500356,106558471,106588376,106603755	106278472,106279190,106499612,106500505,106558583,106588464,106604795	0.627660
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	55123973	55123995	55123973	+	RAMPAGE_only	2	2	7	0.191118	2.521641	chr14	55123866	55124149	LTR|ERVL-MaLR|MLT1O	-	chr14	55129043	55145403	LGALS3|ENST00000254301.13	+	55129043,55137369,55138044,55140274,55142583,55145115	55129300,55137391,55138368,55140363,55142749,55145403	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	238486026	238486043	238486026	-	High_confidence	3	4	12	0.327631	3.277613	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480440	238486023	LINC01139|ENST00000649681.1	-	238480440	238486023	0.916667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40407722	40408105	40407744	-	RAMPAGE_only	21	22	530	14.470381	5.693541	chr2	40407665	40407767	LINE|L2|L2b	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.996226
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	47780106	47780108	47780107	+	High_confidence	71	82	107	2.921379	5.737019	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.981308
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40453269	40453317	40453269	-	High_confidence	11	17	38	1.037499	4.892147	chr2	40453124	40453283	DNA|hAT-Charlie|MER5A	-	chr2	40430019	40453438	SLC8A1|ENST00000455476.5	-	40430019,40453160	40430304,40453438	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	105423846	105424002	105423914	-	RAMPAGE_only	7	7	61	1.665459	5.266843	chr2	105423600	105425018	LINE|L1|L1PA7	+	chr2	105374634	105438503	MSTRG.12494.11	-	105374634,105399502,105402209	105386540,105402095,105438503	0.934426
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	201360453	201360556	201360453	-	RAMPAGE_only	82	82	245	6.689139	5.171492	chr1	201360361	201360542	SINE|MIR|MIR	-	chr1	201359007	201363350	TNNT2|ENST00000476888.5	-	201359007,201359622,201361278,201361950,201362385,201363295	201359255,201359663,201361369,201362022,201362394,201363350	0.510204
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	50756867	50757005	50756942	-	RAMPAGE_only	9	9	112	3.057892	5.458680	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.973214
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	42633309	42633319	42633309	+	High_confidence	2	2	6	0.163816	2.584963	chr3	42633048	42633341	SINE|Alu|AluJr4	-	chr3	42633208	42637000	NKTR|ENST00000460807.2	+	42633208,42634612,42635220,42636867	42633735,42634700,42635366,42637000	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	32403105	32403188	32403148	-	RAMPAGE_only	17	19	98	2.675655	5.298020	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.928571
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	20028515	20028516	20028515	+	High_confidence	619	714	783	21.377941	7.920328	chr1	20028464	20028814	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.632184
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	102449836	102449839	102449836	+	High_confidence	5	5	10	0.273026	2.725481	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	25191851	25191868	25191851	-	RAMPAGE_only	3	3	8	0.218421	3.000000	chr20	25191623	25192078	LTR|ERVL|MER70A	-	chr20	25184671	25196892	LOC101926889|NR_109994.1	-	25184671,25186541,25186896,25187852,25190217,25196622	25186160,25186699,25186979,25187947,25190302,25196892	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	18076054	18076061	18076060	-	High_confidence	19	21	32	0.873683	4.349200	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18066766	18076305	ASAH1|ENST00000637872.1	-	18066766,18069791,18071299,18075540,18076176	18067298,18069878,18071390,18075587,18076305	0.843750
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	50097001	50097014	50097013	+	RAMPAGE_only	8	8	25	0.682565	4.262692	chr10	50096912	50097097	LINE|L1|L1ME3G	+	chr10	50078125	50133506	WASHC2A|ENST00000399339.6	+	50078125,50078674,50080757,50084071,50085496,50087274,50090775,50091430,50092161,50093267,50093859,50095147,50095598,50097674,50099977,50104041,50106333,50110100,50113894,50117905,50119586,50125112,50125368,50126056,50127159,50127582,50129418,50130900,50132805	50078152,50078737,50080931,50084165,50085558,50087322,50090886,50091518,50092233,50093386,50093917,50095207,50095778,50097802,50100064,50104143,50106465,50110270,50113997,50118058,50119769,50125241,50125449,50126179,50127222,50127795,50130039,50131078,50133506	0.640000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	42644615	42644622	42644615	-	High_confidence	5	6	13	0.354934	3.084963	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	0.846154
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	9140393	9140428	9140393	+	High_confidence	48	48	169	4.614140	6.177310	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.733728
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	1655369	1655445	1655410	-	RAMPAGE_only	19	21	49	1.337828	5.159325	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	0.918367
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	72874117	72874135	72874117	-	High_confidence	2	2	6	0.163816	2.584963	chr9	72873937	72874322	LTR|ERVL-MaLR|MSTA	-	chr9	72871727	72874109	LINC01474|NR_121120.1	-	72871727,72872108,72873026,72874015	72872020,72872231,72873155,72874109	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	64802093	64802129	64802102	+	RAMPAGE_only	18	19	54	1.474341	4.940551	chr5	64802007	64802808	LINE|L2|L2b	-	chr5	64800244	64804907	CWC27|ENST00000506168.1	+	64800244,64801301,64804228	64800327,64801332,64804907	0.722222
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	35623191	35623192	35623191	-	High_confidence	11	11	11	0.300329	2.732159	chr22	35623096	35623262	SINE|MIR|MIR	-	chr22	35606763	35623354	MB|ENST00000359787.5	-	35606763,35610883,35617162,35623190	35607443,35611106,35617265,35623354	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	69425679	69425692	69425691	+	High_confidence	3	3	8	0.218421	2.807355	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425689	69429621	AP000439.3|ENST00000545202.1	+	69425689,69427362	69425806,69429621	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	70942791	70942811	70942791	+	RAMPAGE_only	21	21	85	2.320722	5.722257	chr15	70942582	70942814	LTR|ERV1|MER4E1	-	chr15	70936534	71008438	LRRC49|ENST00000559806.5	+	70936534,70963784,70980100,70984093,71008378	70936822,70963932,70980184,70984257,71008438	0.729412
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	52661560	52661570	52661560	+	RAMPAGE_only	4	4	12	0.327631	3.251629	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	0.916667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr21	29193456	29193460	29193459	+	High_confidence	373	382	600	16.381564	5.181778	chr21	29193019	29193674	LTR|ERV1|MER50B	+	chr21	29193493	29326336	MSTRG.14039.2	+	29193493,29270356,29321220,29326058	29194260,29270456,29321514,29326336	0.981667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	35467058	35467081	35467058	-	High_confidence	5	6	14	0.382236	3.700440	chr18	35467057	35467118	DNA|hAT-Charlie|MER5A	-	chr18	35443868	35466752	AC007998.3|ENST00000593122.5	-	35443868,35446874,35466623	35444022,35446955,35466752	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	155679929	155679930	155679929	-	High_confidence	13	13	13	0.354934	3.026987	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	65434445	65434553	65434445	+	RAMPAGE_only	5	5	49	1.337828	5.027889	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.959184
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	643625	643636	643635	-	High_confidence	37	37	107	2.921379	5.490403	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.560748
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	129488881	129488905	129488881	+	High_confidence	4	5	21	0.573355	3.725651	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.904762
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	141332616	141332617	141332616	-	High_confidence	1622	1623	1682	45.922984	5.146878	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.958977
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	75879161	75879162	75879161	+	RAMPAGE_only	16	20	22	0.600657	3.784184	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75868950	75899577	UBE2Q2|ENST00000567921.1	+	75868950,75873427,75883365,75896994,75899426	75869010,75873568,75883424,75897061,75899577	0.727273
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	84902542	84902543	84902542	-	RAMPAGE_only	6	6	9	0.245723	2.750000	chr11	84902450	84902531	SINE|MIR|MIRc	-	chr11	84827737	84916318	MSTRG.4169.1	-	84827737,84859543,84908914	84859232,84908777,84916318	0.555556
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	9126606	9126607	9126606	+	RAMPAGE_only	5	5	8	0.218421	2.750000	chr18	9126653	9126774	SINE|Alu|AluJo	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	219631638	219631659	219631638	+	High_confidence	4	4	18	0.491447	3.852169	chr2	219631665	219631820	SINE|MIR|MIRc	+	chr2	219632058	219637795	SLC4A3|ENST00000416910.1	+	219632058,219632261,219632873,219633273,219633865,219634419,219635270,219635672,219636301,219636679,219637580	219632116,219632442,219633009,219633457,219633979,219634604,219635496,219635891,219636450,219636874,219637795	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	83472641	83472670	83472653	-	High_confidence	3	3	11	0.300329	3.459432	chr12	83472101	83472741	LTR|ERVL-MaLR|MLT1E2	+	chr12	83454830	83472527	MSTRG.5368.1	-	83454830,83472259	83458952,83472527	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	200857745	200857866	200857745	-	High_confidence	3	5	54	1.474341	5.157394	chr2	200857615	200857696	LINE|L1|L1MA8	-	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.796296
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40322211	40322493	40322492	-	RAMPAGE_only	9	14	155	4.231904	5.189257	chr2	40322376	40322681	SINE|Alu|AluJr	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.993548
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	64313071	64313139	64313086	-	RAMPAGE_only	4	5	21	0.573355	3.784184	chr4	64312959	64313106	LTR|ERVL-MaLR|THE1C	+	chr4	64277701	64409398	MSTRG.16353.5	-	64277701,64281040,64281473,64289709,64299973,64305165,64309825,64314647,64322688,64328511,64375171,64409117	64280199,64281086,64281559,64289767,64300017,64305238,64313110,64314763,64322792,64328556,64375223,64409398	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	192657269	192657271	192657270	-	RAMPAGE_only	24	29	42	1.146709	4.945772	chr3	192657136	192657270	DNA|TcMar-Tigger|Tigger15a	-	chr3	192645861	192723922	MSTRG.15939.9	-	192645861,192669730	192665066,192723922	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	150118757	150118789	150118788	-	RAMPAGE_only	3	3	8	0.218421	3.000000	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40468580	40468830	40468818	-	RAMPAGE_only	28	34	208	5.678942	5.625344	chr2	40468618	40468793	LINE|L1|L1MC5a	-	chr2	40097269	40512435	MSTRG.12053.6	-	40097269,40115371,40139400,40160764,40164853,40170280,40174705,40174824,40175260,40178386,40428472,40453160,40462284,40472685	40111316,40115629,40139676,40160864,40164984,40170349,40174720,40174842,40175281,40178493,40430304,40462149,40472652,40512435	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	40057585	40057587	40057586	+	RAMPAGE_only	7	9	12	0.327631	3.459432	chr7	40057423	40057620	LTR|ERVL-MaLR|MLT1J1	-	chr7	39998836	40095546	MSTRG.19897.15	+	39998836,40001860,40045835,40047820,40063022,40078004,40078719,40088125,40092784,40094129	39999500,40002031,40046025,40062927,40063100,40078121,40078851,40088331,40093237,40095546	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	50757202	50757203	50757202	+	High_confidence	4	4	6	0.163816	2.584963	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	72363469	72363491	72363469	-	RAMPAGE_only	2	2	7	0.191118	2.584963	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72355954	72365197	MSTRG.21951.6	-	72355954,72356930,72359417,72360109,72364695	72356101,72357056,72359521,72363606,72365197	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	58455288	58455309	58455289	-	RAMPAGE_only	2	3	11	0.300329	3.121928	chr5	58455099	58455251	DNA|hAT-Charlie|MER5A	-	chr5	58453981	58460139	PLK2|NM_006622.3	-	58453981,58454910,58455284,58455538,58456025,58456491,58456944,58457180,58457487,58458083,58458398,58458724,58458984,58459689	58454774,58455021,58455414,58455779,58456155,58456589,58457092,58457379,58457583,58458171,58458528,58458841,58459092,58460139	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	100663181	100663221	100663181	-	High_confidence	4	4	16	0.436842	4.000000	chr8	100662939	100663274	LINE|L1|L1PA17	+	chr8	100612038	100663415	SNX31|ENST00000520352.5	-	100612038,100612994,100617619,100630326,100635896,100663141	100612087,100613085,100617730,100630391,100636011,100663415	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	43508396	43508408	43508396	+	RAMPAGE_only	2	2	9	0.245723	2.947703	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	93339722	93339742	93339741	-	RAMPAGE_only	5	5	10	0.273026	2.725481	chr12	93339484	93339772	SINE|Alu|AluSp	+	chr12	93317134	93377716	AC124947.1|ENST00000552835.5	-	93317134,93328026,93339638,93377436	93317541,93328055,93339736,93377716	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	761092	761115	761110	+	High_confidence	3	3	15	0.409539	3.521641	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.866667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	94234065	94234073	94234065	+	RAMPAGE_only	3	3	7	0.191118	2.584963	chr4	94234038	94234182	SINE|MIR|MIR3	-	chr4	94208083	94289899	SMARCAD1|ENST00000394961.6	+	94208083,94208345,94213034,94226118,94233953,94236951,94240905,94249653,94250751,94252615,94264706,94270727,94273616,94274737,94274889,94276338,94277021,94278421,94278615,94278922,94280591,94281471,94283120,94284959,94289472	94208242,94208584,94213152,94226296,94234122,94237018,94241006,94249755,94250833,94253007,94264906,94270818,94273716,94274797,94274965,94276474,94277159,94278517,94278733,94279050,94280780,94281590,94283303,94285069,94289899	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	147382886	147382900	147382899	+	High_confidence	11	12	25	0.682565	3.833270	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.880000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	99023385	99023423	99023416	+	RAMPAGE_only	2	3	10	0.273026	3.121928	chr9	99023460	99023631	LINE|L1|L1MC5	+	chr9	98943712	99070792	COL15A1|NM_001855.4	+	98943712,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	64265524	64265530	64265524	+	High_confidence	4	4	9	0.245723	2.725481	chr20	64265443	64265603	SINE|MIR|MIR	-	chr20	64265511	64273545	PCMTD2|ENST00000609818.1	+	64265511,64267886,64273220	64265613,64268010,64273545	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	155058772	155058784	155058772	+	High_confidence	3	3	11	0.300329	3.121928	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	89888929	89888962	89888929	+	RAMPAGE_only	7	10	25	0.682565	3.973661	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.680000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	19970578	19970579	19970578	+	RAMPAGE_only	7	7	8	0.218421	2.521641	chr3	19970315	19970700	DNA|TcMar-Tigger|Tigger12A	+	chr3	19975515	19984121	RAB5A|ENST00000473608.1	+	19975515,19976046,19978309,19983707	19975752,19976169,19978403,19984121	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	67076927	67076955	67076927	-	RAMPAGE_only	3	4	12	0.327631	3.584963	chr10	67076859	67077820	LINE|L2|L2a	+	chr10	66766154	67180443	CTNNA3|ENST00000494580.1	-	66766154,66775443,67180316	66766416,66775524,67180443	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	70085583	70085630	70085629	-	High_confidence	6	6	26	0.709868	4.403856	chr2	70085547	70085755	SINE|MIR|MIR	+	chr2	69964409	70085595	PCBP1-AS1|ENST00000628322.2	-	69964409,69996685,70018014,70032132,70051202,70077300,70085546	69964427,69996888,70018131,70032255,70051305,70077381,70085595	0.538462
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	64242532	64242547	64242546	+	High_confidence	8	9	16	0.436842	3.056565	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.937500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	35209844	35210036	35209908	-	RAMPAGE_only	9	9	144	3.931575	5.810448	chr7	35208772	35210109	LINE|L1|L1ME1	-	chr7	35192266	35254147	MSTRG.19852.4	-	35192266,35208919,35210392,35240878,35244948,35248676,35249950	35208645,35210257,35231580,35241037,35245057,35248841,35254147	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	212233406	212233436	212233406	-	RAMPAGE_only	36	37	98	2.675655	5.358824	chr1	212233221	212233468	LINE|CR1|L3b	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	0.938776
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	2375370	2375404	2375372	-	High_confidence	340	491	1394	38.059833	6.042504	chr11	2375301	2375633	LINE|L2|L2b	+	chr11	2369174	2375398	MSTRG.3366.1	-	2369174,2369372,2375298	2369244,2373245,2375398	0.963415
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	37966318	37966357	37966318	+	RAMPAGE_only	16	16	93	2.539142	4.712966	chr22	37965988	37966342	LINE|L2|L2c	-	chr22	37953726	37967801	POLR2F|ENST00000470701.1	+	37953726,37956772,37959345,37967098,37967624	37953860,37956842,37959476,37967170,37967801	0.892473
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40354125	40354543	40354360	-	RAMPAGE_only	25	25	616	16.818405	5.790696	chr2	40354000	40354318	LINE|L1|L1MC5a	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.991883
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	63891962	63892033	63891982	+	RAMPAGE_only	3	3	33	0.900986	3.892879	chr1	63891497	63892010	LTR|ERVL|MLT2B2	+	chr1	63826803	63927005	MSTRG.851.1	+	63826803	63927005	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	50756643	50756667	50756666	-	RAMPAGE_only	5	5	15	0.409539	3.640224	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.933333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	33864055	33864091	33864090	+	RAMPAGE_only	4	4	20	0.546052	3.636894	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40470449	40470631	40470568	-	RAMPAGE_only	19	24	144	3.931575	5.774197	chr2	40470247	40470762	LINE|L1|L1ME4a	+	chr2	40097269	40512435	MSTRG.12053.6	-	40097269,40115371,40139400,40160764,40164853,40170280,40174705,40174824,40175260,40178386,40428472,40453160,40462284,40472685	40111316,40115629,40139676,40160864,40164984,40170349,40174720,40174842,40175281,40178493,40430304,40462149,40472652,40512435	0.986111
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	34536093	34536110	34536109	-	High_confidence	4	4	8	0.218421	2.521641	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	212103219	212103232	212103231	-	RAMPAGE_only	2	2	8	0.218421	2.521641	chr2	212103121	212103296	LINE|L2|L2b	+	chr2	211375720	212538529	MSTRG.13178.4	-	211375720,211386852,211420440,211422006,211424154,211428407,211430944,211561902,211619176,211623921,211630461,211657753,211657949,211665322,211673163,211679051,211701966,211704103,211705317,211712049,211713534,211722392,211725075,211750638,211788024,211947429,212018212,212107692,212538448	211384060,211387150,211420611,211422104,211424301,211428483,211431100,211562088,211619275,211624044,211630594,211657828,211657994,211665477,211673257,211679184,211702166,211704194,211705391,211712176,211713648,211722534,211725194,211750704,211788159,211947616,212107628,212124903,212538529	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	217842161	217842198	217842161	-	High_confidence	6	6	25	0.682565	4.175736	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.680000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	37020215	37020281	37020227	-	RAMPAGE_only	31	31	139	3.795062	5.737853	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	37008167	37013995	HEATR5B|ENST00000471051.1	-	37008167,37013840	37008848,37013995	0.712230
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	25034939	25035006	25034989	+	RAMPAGE_only	3	3	21	0.573355	3.177566	chr15	25034892	25035089	DNA|hAT-Charlie|MER58A	-	chr15	25031872	25036490	PWAR6|ENST00000552334.1	+	25031872	25036490	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	65642904	65642909	65642904	+	High_confidence	1	2	7	0.191118	2.584963	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr21	28048446	28048447	28048446	+	High_confidence	9	10	10	0.273026	2.725481	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	173705202	173705226	173705212	+	RAMPAGE_only	3	3	9	0.245723	2.725481	chr2	173699375	173705410	LINE|L1|L1PA2	-	chr2	174395728	174429575	SCRN3|NM_024583.4	+	174395728,174398274,174399921,174400989,174404102,174422884,174424474,174427712	174395817,174398442,174400103,174401189,174404315,174423047,174424649,174429575	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	24580610	24580623	24580612	+	High_confidence	7	11	22	0.600657	4.121928	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	151687295	151687336	151687314	-	High_confidence	11	11	46	1.255920	4.490741	chr4	151687184	151687573	LINE|L2|L2b	+	chr4	151670943	151687083	GATB|ENST00000507592.5	-	151670943,151672761,151679812,151686907	151671302,151672896,151679891,151687083	0.934783
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	173223342	173223494	173223391	+	RAMPAGE_only	6	6	65	1.774669	4.239962	chr2	173223213	173223451	SINE|MIR|MIR	+	chr2	173075841	173227146	MAP3K20|ENST00000338983.7	+	173075841,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173221149	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173227146	0.984615
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40387441	40387774	40387764	-	RAMPAGE_only	24	30	312	8.518413	6.009610	chr2	40387663	40387962	SINE|Alu|AluSz	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.993590
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	96979662	96979700	96979699	+	RAMPAGE_only	2	2	10	0.273026	2.846439	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	59892716	59892741	59892716	-	High_confidence	3	3	14	0.382236	3.700440	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.642857
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40503061	40503558	40503532	-	RAMPAGE_only	13	15	243	6.634533	6.471648	chr2	40503425	40505123	LINE|L1|L1MA1	+	chr2	40097269	40512435	MSTRG.12053.6	-	40097269,40115371,40139400,40160764,40164853,40170280,40174705,40174824,40175260,40178386,40428472,40453160,40462284,40472685	40111316,40115629,40139676,40160864,40164984,40170349,40174720,40174842,40175281,40178493,40430304,40462149,40472652,40512435	0.995885
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	36989681	36989810	36989766	-	RAMPAGE_only	3	3	35	0.955591	4.454822	chr3	36989656	36989826	DNA|hAT-Charlie|MER20B	-	chr3	36985042	36993168	EPM2AIP1|ENST00000322716.7	-	36985042	36993168	0.971429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	45756343	45756351	45756350	+	RAMPAGE_only	17	21	49	1.337828	5.402569	chr10	45756249	45756434	LINE|L1|L1ME3G	+	chr10	45727263	45792936	WASHC2C|ENST00000623400.3	+	45727263,45727416,45728861,45737982,45740072,45743389,45744820,45746599,45750095,45750750,45751481,45752587,45753179,45754485,45754935,45757011,45759314,45763387,45765678,45769448,45773255,45777272,45778952,45784564,45784820,45785508,45786611,45787034,45788870,45790355,45792260	45727320,45727539,45729026,45738045,45740246,45743483,45744882,45746647,45750206,45750838,45751553,45752706,45753237,45754545,45755115,45757139,45759401,45763489,45765810,45769618,45773358,45777425,45779135,45784693,45784901,45785631,45786674,45787247,45789491,45790533,45792936	0.775510
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	119496005	119496021	119496005	-	RAMPAGE_only	2	3	8	0.218421	2.521641	chr4	119495988	119496069	SINE|MIR|MIR	-	chr4	119494394	119627287	PDE5A|NM_033430.2	-	119494394,119501169,119502580,119504535,119505854,119507603,119511046,119519044,119520934,119525548,119538959,119542458,119552549,119553637,119560295,119562832,119565320,119567072,119596522,119606708,119627149	119498738,119501253,119502655,119504599,119505932,119507704,119511134,119519139,119521060,119525695,119539019,119542634,119552637,119553746,119560363,119562970,119565410,119567144,119596612,119607297,119627287	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	201376344	201376374	201376357	-	RAMPAGE_only	4	4	15	0.409539	3.324863	chr1	201376245	201376359	SINE|MIR|MIRc	+	chr1	201363355	201377652	MSTRG.1990.19	-	201363355,201364297,201365609,201367770,201368161,201372026,201372144,201373213	201363406,201365307,201366871,201367806,201368227,201372041,201372155,201377652	0.933333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	3062922	3062983	3062982	-	High_confidence	65	65	294	8.026966	6.107505	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.979592
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	88760348	88760376	88760375	+	RAMPAGE_only	4	4	13	0.354934	3.418296	chr1	88760411	88760694	DNA|TcMar-Tigger|Tigger17c	+	chr1	88771454	88833431	MSTRG.1018.5	+	88771454,88771662,88784638,88786103,88804390,88804845,88805496,88807312,88807528,88807683,88813556,88821940,88824309,88828480,88833076,88833244	88771566,88771879,88784824,88786213,88804534,88804921,88806017,88807443,88807604,88807775,88813733,88822003,88824386,88832851,88833157,88833431	0.692308
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	186607905	186607952	186607935	+	RAMPAGE_only	61	62	255	6.962165	6.800924	chr2	186607713	186608293	LTR|ERVL?|LTR87	-	chr2	186600204	186677441	ITGAV|ENST00000433736.6	+	186600204,186602020,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186600381,186602151,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186677441	0.580392
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	141429538	141429587	141429538	+	RAMPAGE_only	37	39	63	1.720064	5.572363	chr3	141429492	141430039	LINE|L2|L2a	-	chr3	141431722	141442722	ZBTB38|ENST00000509813.1	+	141431722,141442388	141432243,141442722	0.507937
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	50766308	50766340	50766308	-	High_confidence	1	1	9	0.245723	3.000000	chr14	50766057	50766321	SINE|MIR|MIR	-	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	44293991	44293992	44293991	-	High_confidence	10	11	14	0.382236	3.392747	chr10	44293910	44294034	LTR|ERV1?|LTR103_Mam	+	chr10	44292083	44293709	AL137026.1|ENST00000452578.2	-	44292083,44293271	44292734,44293709	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	105135147	105135149	105135148	-	RAMPAGE_only	6	10	13	0.354934	3.418296	chr6	105135144	105135197	LINE|L2|L2c	+	chr6	105096821	105136346	BVES|NM_147147.3	-	105096821,105115685,105116700,105124546,105125390,105129378,105133351,105136200	105101213,105115827,105116868,105124655,105125578,105129503,105133588,105136346	0.538462
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	139344537	139344573	139344547	+	High_confidence	63	63	167	4.559535	5.154981	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.982036
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	48924770	48924783	48924782	+	High_confidence	3	3	7	0.191118	2.521641	chr3	48924715	48924993	SINE|Alu|AluSc8	-	chr3	48924715	48945181	ARIH2|ENST00000463204.5	+	48924715,48927461,48945135	48924839,48927813,48945181	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	27579337	27579369	27579368	+	RAMPAGE_only	3	3	11	0.300329	3.321928	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.636364
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	165576465	165576484	165576465	-	High_confidence	3	4	8	0.218421	2.750000	chr6	165576342	165576862	LINE|L2|L2	+	chr6	165333024	165576448	PDE10A|ENST00000650117.1	-	165333024,165336122,165339277,165343390,165379193,165388297,165392645,165395180,165396316,165413500,165416188,165418634,165428657,165430286,165431421,165432973,165435236,165448927,165450241,165482314,165543439,165576411	165333127,165336211,165339358,165343502,165379366,165388453,165392796,165395264,165396459,165413687,165416281,165418777,165428709,165430345,165431472,165433129,165435377,165448977,165450362,165482343,165543568,165576448	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	171737417	171737465	171737464	-	High_confidence	20	20	75	2.047695	5.476147	chr5	171737359	171737575	SINE|MIR|MIRb	+	chr5	171724574	171737519	AC022440.1|ENST00000650062.1	-	171724574,171732972,171734751,171736013,171736976	171726256,171733056,171734878,171736329,171737519	0.933333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	62897380	62897401	62897380	+	High_confidence	2	2	7	0.191118	2.584963	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897375	62899777	LOC728673|NR_126047.1	+	62897375,62897877	62897734,62899777	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	57267772	57267782	57267772	+	RAMPAGE_only	2	3	6	0.163816	2.584963	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	4143196	4143218	4143199	+	High_confidence	80	82	216	5.897363	5.722076	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.976852
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	93794817	93794879	93794823	+	High_confidence	153	171	549	14.989131	6.921063	chr8	93794713	93794824	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.939891
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	50172544	50172590	50172544	+	High_confidence	3	3	14	0.382236	3.664498	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	58059950	58059965	58059955	-	High_confidence	12	17	60	1.638156	5.200191	chr11	58059905	58060126	LTR|ERVL|LTR33	+	chr11	58044109	58060138	AP004247.2|ENST00000526131.1	-	58044109,58047256,58057682,58059925	58045342,58047547,58057835,58060138	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	217909736	217909758	217909736	-	RAMPAGE_only	12	13	33	0.900986	4.369707	chr2	217909603	217909688	DNA|hAT-Charlie|MER5A	-	chr2	217848883	217905461	TNS1|ENST00000413554.5	-	217848883,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217905295	217849087,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217905461	0.939394
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	35221454	35221510	35221487	-	RAMPAGE_only	4	5	13	0.354934	3.180833	chr7	35221333	35221964	LINE|L1|L1ME4a	+	chr7	35192266	35254147	MSTRG.19852.4	-	35192266,35208919,35210392,35240878,35244948,35248676,35249950	35208645,35210257,35231580,35241037,35245057,35248841,35254147	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	38789812	38789813	38789812	-	RAMPAGE_only	10	10	12	0.327631	3.418296	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	48492783	48492791	48492783	-	High_confidence	5	6	12	0.327631	3.418296	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.916667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	105435139	105435659	105435186	-	RAMPAGE_only	18	19	753	20.558863	6.229639	chr2	105435100	105435229	LINE|L1|L1M5	-	chr2	105374634	105438503	MSTRG.12494.11	-	105374634,105399502,105402209	105386540,105402095,105438503	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40378348	40378470	40378360	-	RAMPAGE_only	10	10	117	3.194405	4.811871	chr2	40378015	40378555	LINE|L2|L2a	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	121286538	121286601	121286591	+	High_confidence	30	30	115	3.139800	5.980410	chr9	121286415	121286709	LINE|L2|L2b	+	chr9	121286591	121332656	GSN|ENST00000545652.6	+	121286591,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286761,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332656	0.913043
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	8233011	8233028	8233011	-	RAMPAGE_only	3	3	8	0.218421	2.807355	chr7	8233000	8233142	SINE|MIR|MIR1_Amn	-	chr7	8113922	8235926	ICA1|ENST00000422063.6	-	8113922,8127872,8138839,8138984,8141764,8141968,8143874,8157115,8158526,8218304,8221274,8228600,8232589,8235909	8114044,8128142,8138881,8139047,8141817,8142055,8143972,8157214,8158652,8218503,8221398,8228673,8232755,8235926	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	106561950	106561951	106561950	-	High_confidence	30	30	31	0.846381	4.640224	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.709677
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	84872765	84873139	84872875	+	RAMPAGE_only	23	25	309	8.436505	5.034478	chr15	84872759	84872883	LTR|ERVL|ERVL-E-int	-	chr15	84817493	84873482	MSTRG.7942.2	+	84817493,84823329,84827483,84838979,84839701,84856391,84859242,84859775,84860036,84863551,84864441,84867316,84868110	84817595,84823368,84827605,84839097,84840932,84858555,84859390,84859903,84862915,84863640,84864665,84867365,84873482	0.954693
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	10553364	10553365	10553364	+	High_confidence	7	7	7	0.191118	2.521641	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	176395298	176395328	176395298	-	RAMPAGE_only	6	6	20	0.546052	3.932138	chr5	176395154	176395342	LINE|L2|L2c	+	chr5	176392454	176416569	CLTB|NM_001834.3	-	176392454,176397606,176397929,176410256,176416176	176392945,176397718,176398047,176410303,176416569	0.950000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	29619623	29619624	29619623	+	RAMPAGE_only	6	6	6	0.163816	2.584963	chr3	29619575	29619654	SINE|MIR|MIR1_Amn	+	chr3	29281072	29739849	MSTRG.14760.15	+	29281072,29281550,29434742,29488440,29587113,29739719	29281440,29281756,29434915,29488499,29698618,29739849	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	18063185	18063216	18063215	-	High_confidence	12	15	53	1.447038	4.808504	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	48492655	48492663	48492655	-	High_confidence	4	4	11	0.300329	3.121928	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.545455
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	187513649	187513653	187513652	-	High_confidence	3	4	8	0.218421	3.000000	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	126392132	126392135	126392134	+	High_confidence	7	11	13	0.354934	3.251629	chr11	126391997	126392146	SINE|MIR|MIRb	-	chr11	126392174	126407627	ST3GAL4|ENST00000526311.5	+	126392174,126406095,126406472,126406942,126407251,126407573	126392354,126406171,126406557,126407023,126407349,126407627	0.538462
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	79481703	79481791	79481790	-	RAMPAGE_only	61	61	309	8.436505	6.387381	chr5	79481262	79481938	LINE|L1|L1MEc	+	chr5	79375929	79483484	MSTRG.17527.4	-	79375929,79396822,79397526,79439009,79447052,79448884,79456861,79481631	79376197,79396903,79402055,79439149,79448826,79451121,79457018,79483484	0.854369
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	57468774	57468795	57468774	+	RAMPAGE_only	3	3	12	0.327631	2.913977	chr15	57468704	57469072	LTR|ERVL-MaLR|THE1B	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.583333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	63618044	63618046	63618045	-	High_confidence	397	514	583	15.917419	7.191277	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63181618	63618046	MSTRG.8728.1	-	63181618,63334599,63531224,63617692	63305420,63334667,63531304,63618046	0.734134
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40360740	40360910	40360740	-	RAMPAGE_only	6	7	94	2.566445	5.318623	chr2	40360487	40360745	SINE|MIR|MIR	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	184793829	184793864	184793829	-	RAMPAGE_only	14	15	34	0.928289	4.057476	chr1	184793749	184793862	LINE|L2|L2c	+	chr1	184791029	184974550	FAM129A|ENST00000367511.3	-	184791029,184798078,184803584,184805945,184808073,184818637,184823166,184823637,184831846,184884632,184890107,184894074,184899178,184974301	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184823742,184831962,184884800,184890222,184894206,184899309,184974550	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	77175254	77175303	77175302	+	High_confidence	12	12	45	1.228617	5.124093	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.955556
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	51426285	51426325	51426285	-	RAMPAGE_only	2	2	20	0.546052	4.142664	chr1	51426230	51426417	LTR|ERVL-MaLR|MLT1K	+	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	50397418	50397419	50397418	+	High_confidence	13	13	13	0.354934	3.026987	chr13	50396411	50397833	LTR|ERV1|LTR12C	+	chr13	50397418	50654079	DLEU1|ENST00000647700.1	+	50397418,50415088,50425577,50433412,50648592,50653710	50397896,50415202,50425729,50433550,50648643,50654079	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40381767	40382435	40381767	-	RAMPAGE_only	25	30	985	26.893067	7.156479	chr2	40381612	40382104	LTR|ERV1|LOR1a	+	chr2	40325845	40430271	MSTRG.12053.20	-	40325845,40332051,40417062	40331975,40416803,40430271	0.997970
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	80147920	80147930	80147929	+	High_confidence	10	10	25	0.682565	4.501629	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.640000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	185643001	185643145	185643052	-	RAMPAGE_only	11	11	128	3.494734	5.074081	chr4	185643014	185643625	LINE|L2|L2b	-	chr4	185630548	185657546	MSTRG.17037.22	-	185630548,185635354,185639244,185643353,185646667,185649466,185651783,185652661,185657423	185630598,185638162,185643302,185646071,185646782,185649656,185651828,185652728,185657546	0.968750
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	69306792	69306794	69306793	-	High_confidence	4	5	8	0.218421	2.807355	chr9	69306163	69306938	LTR|ERV1|MER41-int	-	chr9	69296680	69307056	BANCR|NR_047671.2	-	69296680,69304935,69306147,69306853	69296867,69305077,69306290,69307056	0.625000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	179681665	179681670	179681665	+	High_confidence	5	6	14	0.382236	3.521641	chr3	179681222	179681750	LTR|ERV1|LTR6A	-	chr3	179681698	179789401	MSTRG.15824.5	+	179681698,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179681737,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179789401	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	33394087	33394155	33394087	-	High_confidence	4	5	22	0.600657	4.186704	chr9	33394009	33394115	LINE|L2|L2b	+	chr9	33385505	33394176	AQP7|ENST00000447660.3	-	33385505,33386076,33386403,33393796	33385866,33386195,33386541,33394176	0.954545
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	68975842	68975846	68975842	-	High_confidence	666	691	1185	32.353588	6.636356	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.652321
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	145681252	145681278	145681261	-	High_confidence	4	4	11	0.300329	3.277613	chr7	145681186	145681435	LINE|L1|L1MB5	-	chr7	145675881	145681369	AC006007.1|ENST00000422084.1	-	145675881,145681108	145676292,145681369	0.636364
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	192705133	192705143	192705133	-	RAMPAGE_only	5	5	14	0.382236	3.334679	chr3	192703992	192705811	DNA|TcMar-Tigger|Tigger1	-	chr3	192645861	192723922	MSTRG.15939.9	-	192645861,192669730	192665066,192723922	0.928571
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	94480300	94480329	94480316	+	RAMPAGE_only	4	5	23	0.627960	4.297079	chr4	94480309	94480831	LTR|ERVL|LTR33A	-	chr4	94451885	94588127	MSTRG.16528.5	+	94451885,94455246,94456243,94467560,94473167,94478944,94482878,94523723,94573350,94575942,94584985,94585564,94586407,94586988	94451995,94455384,94467380,94473071,94478191,94481639,94484054,94523875,94573393,94576034,94585003,94585737,94586444,94588127	0.913043
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	46087012	46087066	46087042	-	High_confidence	19	19	85	2.320722	5.566316	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.788235
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	20832881	20832903	20832902	-	RAMPAGE_only	22	23	61	1.665459	4.733696	chr13	20832849	20832905	SINE|tRNA|LFSINE_Vert	-	chr13	20777328	20843278	MSTRG.5824.2	-	20777328,20786964,20787480,20788485,20790461,20796075,20796763,20799164,20800155,20800830,20807456,20808435,20809082,20809790,20821703,20822131,20827066,20842894,20843131	20783919,20787057,20787598,20788616,20790580,20796256,20797057,20799339,20800325,20800990,20807634,20808581,20809225,20809967,20821878,20822289,20827179,20843048,20843278	0.786885
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	196475667	196475668	196475667	-	RAMPAGE_only	6	7	7	0.191118	2.584963	chr2	196475448	196475831	LTR|ERVL-MaLR|MLT1K	-	chr2	196199336	196586729	HECW2|ENST00000644256.1	-	196199336,196215864,196217007,196220038,196220794,196222210,196225771,196228101,196240448,196242083,196253919,196257822,196271192,196274020,196278527,196292564,196306487,196307129,196307934,196317273,196318551,196320338,196322477,196324979,196329574,196334423,196343656,196433131,196586507	196201388,196215977,196217093,196220153,196220941,196222340,196225870,196228254,196240562,196242204,196254029,196257906,196271289,196274123,196278662,196292750,196306612,196307233,196308085,196317369,196319904,196320439,196322620,196325149,196329650,196334518,196343764,196433458,196586729	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	81427421	81427462	81427444	-	High_confidence	6	8	39	1.064802	4.352978	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.974359
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	27121396	27121426	27121396	-	RAMPAGE_only	3	3	20	0.546052	3.608695	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	154287420	154287450	154287420	+	High_confidence	4	4	17	0.464144	3.381580	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	0.941176
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	3129639	3129669	3129668	-	RAMPAGE_only	5	5	25	0.682565	4.213661	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3128832	3132042	ZNF213-AS1|ENST00000573447.1	-	3128832,3131746	3129653,3132042	0.720000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	56839178	56839181	56839178	-	RAMPAGE_only	8	8	19	0.518750	3.725481	chr6	56839131	56839380	LTR|ERVL-MaLR|MLT1J	+	chr6	56670674	56843635	MSTRG.18911.36	-	56670674,56699652,56701887,56703647,56704279,56735227,56843054	56670807,56699745,56701965,56703746,56704369,56735289,56843635	0.736842
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	226364201	226364202	226364201	-	High_confidence	17	19	24	0.655263	4.055958	chr1	226364119	226364211	SINE|MIR|MIRb	-	chr1	226361318	226364372	PARP1|ENST00000463968.5	-	226361318,226361968,226363098,226363942	226361541,226362083,226363160,226364372	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	100168705	100168752	100168751	-	RAMPAGE_only	7	8	21	0.573355	3.511085	chr1	100168654	100168846	SINE|MIR|MIR	-	chr1	100148852	100178215	LRRC39|ENST00000370137.5	-	100148852,100152384,100155050,100156171,100158230,100159258,100160465,100168403,100173330,100178134	100149097,100152524,100155203,100156317,100158367,100159415,100160571,100168594,100173370,100178215	0.904762
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	80115068	80115069	80115068	+	RAMPAGE_only	23	23	23	0.627960	3.311636	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.913043
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	12522444	12522464	12522463	+	RAMPAGE_only	4	4	12	0.327631	3.418296	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.916667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	46266488	46266535	46266494	-	High_confidence	36	40	208	5.678942	6.433173	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.793269
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	60182527	60182554	60182550	-	High_confidence	4	4	15	0.409539	3.640224	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.733333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	98943483	98943578	98943577	+	High_confidence	36	73	171	4.668746	6.382573	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.994152
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	205917581	205917612	205917590	-	RAMPAGE_only	6	6	26	0.709868	4.008132	chr1	205917586	205917804	SINE|MIR|MIRc	+	chr1	205913053	205928386	SLC26A9|ENST00000491127.5	-	205913053,205917282,205918839,205920175,205921565,205923081,205923334,205923543,205924382,205926534,205927210,205927491,205927901	205915404,205917354,205918985,205920230,205921847,205923195,205923427,205923613,205924489,205926630,205927288,205927605,205928386	0.923077
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	99697870	99697881	99697880	+	RAMPAGE_only	3	3	11	0.300329	3.121928	chr15	99696737	99698510	LINE|L1|L1MD3	+	chr15	99566482	99700112	MSTRG.8038.19	+	99566482,99598429,99632977,99645560,99652289,99674392,99675398,99690240	99568979,99598511,99633173,99652247,99671454,99674612,99675458,99700112	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	147173203	147173261	147173225	+	High_confidence	9	9	29	0.791776	4.504706	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.724138
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	106278141	106278142	106278141	+	High_confidence	25	25	28	0.764473	4.083617	chr9	106277947	106278267	LINE|RTE-X|L4_C_Mam	+	chr9	106278391	106604795	LINC01505|ENST00000435485.5	+	106278391,106279100,106499486,106500356,106558471,106588376,106603755	106278472,106279190,106499612,106500505,106558583,106588464,106604795	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	125978874	125978911	125978874	+	RAMPAGE_only	3	3	14	0.382236	3.392747	chr6	125978855	125978941	LINE|L2|L2a	-	chr6	125956780	125980244	HINT3|ENST00000229633.6	+	125956780,125966886,125972258,125974846,125977643	125957178,125967004,125972328,125974973,125980244	0.928571
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	74199383	74199405	74199404	+	High_confidence	19	19	41	1.119407	4.396229	chr8	74199086	74199513	LINE|L2|L2a	+	chr8	74199395	74208441	AC087627.1|ENST00000522339.2	+	74199395,74207358,74207720	74199532,74207493,74208441	0.878049
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	45703971	45703972	45703971	+	High_confidence	9	9	13	0.354934	3.584963	chr22	45703540	45704058	LTR|ERVL|LTR75	-	chr22	45703972	45738839	ATXN10|ENST00000476998.5	+	45703972,45718412,45729424,45738730	45704098,45718493,45729590,45738839	0.538462
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	10844348	10844421	10844420	+	RAMPAGE_only	35	35	186	5.078285	5.617386	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10878266	10885118	LOC101929733|NR_110575.1	+	10878266,10884833	10878444,10885118	0.591398
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	29122308	29122315	29122314	+	High_confidence	5	6	9	0.245723	3.000000	chr7	29122133	29122608	LTR|ERV1|MER31A	-	chr7	29122339	29514667	AC004593.3|ENST00000644824.1	+	29122339,29126328,29128013,29145853,29146848,29354624,29367931,29393678,29398372,29400542,29480278,29495951,29499866,29504743,29507227,29509300,29512563	29122642,29126626,29128167,29146745,29146960,29354663,29367987,29393710,29398486,29400828,29480356,29496036,29500040,29504821,29507365,29509406,29514667	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	10363964	10363965	10363964	+	High_confidence	5	5	8	0.218421	2.807355	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	48590029	48590033	48590029	+	High_confidence	2	2	7	0.191118	2.584963	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48590041	48598827	WDR13|ENST00000470124.1	+	48590041,48597957,48598716	48590287,48598037,48598827	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	24011756	24011757	24011756	+	High_confidence	10	10	10	0.273026	3.121928	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	173369507	173369538	173369507	-	High_confidence	3	3	14	0.382236	3.085055	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40413118	40413234	40413134	-	RAMPAGE_only	7	7	58	1.583551	5.253732	chr2	40413068	40413478	LINE|L1|L1PA4	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.948276
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	28878858	28878861	28878858	+	RAMPAGE_only	2	2	7	0.191118	2.584963	chrX	28878808	28878978	SINE|MIR|MIRb	-	chrX	28844289	28894226	MSTRG.22597.1	+	28844289	28894226	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	80485592	80485619	80485592	+	High_confidence	9	9	19	0.518750	4.058814	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.526316
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	35399486	35399545	35399538	+	RAMPAGE_only	13	14	49	1.337828	5.159325	chr19	35399184	35399804	LTR|ERV1|MER49	+	chr19	35405606	35416840	LINC01531|ENST00000536898.5	+	35405606,35406584,35409285,35411161,35416478	35405681,35409151,35409472,35411282,35416840	0.775510
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	47214434	47214463	47214462	+	High_confidence	7	7	29	0.791776	4.168326	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214464	47216873	DDB2|ENST00000622878.4	+	47214464,47215070,47216335,47216857	47214674,47215263,47216472,47216873	0.758621
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	43133119	43133146	43133145	+	High_confidence	6	6	14	0.382236	3.807355	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133161	43146521	TMEM62|ENST00000565291.5	+	43133161,43134256,43135511,43138573,43146492	43133402,43134368,43135649,43138619,43146521	0.928571
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	14273883	14273904	14273883	-	RAMPAGE_only	3	3	14	0.382236	3.546594	chr9	14273766	14273878	LINE|L2|L2	-	chr9	14150179	14313667	MSTRG.21718.20	-	14150179,14179726,14273487,14287738,14313481	14155893,14179780,14287171,14307520,14313667	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	110118145	110118153	110118145	-	RAMPAGE_only	4	7	14	0.382236	3.546594	chr2	110117625	110118184	LINE|L1|L1MD2	-	chr2	110083869	110116566	MALL|NM_005434.4	-	110083869,110087571,110091602,110115687	110085757,110087697,110091770,110116566	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	71631354	71631394	71631354	+	RAMPAGE_only	16	16	48	1.310525	5.194236	chr5	71631155	71631473	LINE|L2|L2c	-	chr5	71604379	71652722	MSTRG.17410.8	+	71604379,71632120,71634942,71635150,71641002,71643818,71646210,71649096,71650068,71652668	71604468,71632185,71635042,71635246,71641075,71643895,71646277,71649253,71650183,71652722	0.562500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	35449689	35449725	35449724	+	RAMPAGE_only	11	16	41	1.119407	4.696103	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.682927
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	174505803	174505817	174505803	+	RAMPAGE_only	4	4	12	0.327631	3.251629	chr1	174505542	174506270	LINE|L1|L1MA8	+	chr1	174159580	174590125	MSTRG.1837.7	+	174159580,174219124,174220971,174231144,174241482,174250474,174252479,174272413,174275832,174278612,174304985,174370978,174393994,174397568,174530171,174586312	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174397473,174530074,174586289,174590125	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	105413805	105413863	105413833	-	RAMPAGE_only	5	6	27	0.737170	3.884155	chr2	105413779	105414565	LTR|ERVL|MER21B	-	chr2	105374634	105438503	MSTRG.12494.11	-	105374634,105399502,105402209	105386540,105402095,105438503	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	128619054	128619071	128619070	+	RAMPAGE_only	3	3	7	0.191118	2.521641	chr7	128619037	128619073	LINE|L2|L2c	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	30974928	30974939	30974938	-	RAMPAGE_only	3	4	9	0.245723	3.169925	chr10	30974767	30974948	SINE|MIR|MIR3	-	chr10	30820206	30923388	ZNF438|ENST00000609683.5	-	30820206,30830113,30834120,30835566,30850221,30876997,30908932,30923286	30820444,30830167,30834212,30835640,30850367,30877065,30909015,30923388	0.555556
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	69624289	69624387	69624376	+	High_confidence	97	99	674	18.401957	6.610749	chr12	69624339	69624616	SINE|Alu|AluSc5	-	chr12	69624311	69815550	MSTRG.5313.2	+	69624311,69624856,69755383,69756404,69784719,69794436,69795140,69800208,69801608,69812777	69624461,69624950,69755659,69756663,69784815,69794514,69795344,69800337,69801721,69815550	0.599407
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	210020678	210020691	210020690	+	RAMPAGE_only	3	3	7	0.191118	2.807355	chr2	210020462	210020693	SINE|MIR|MIRb	+	chr2	210002627	210021576	RPE|ENST00000429921.5	+	210002627,210003437,210015972,210016203,210016506,210017472,210019668	210002783,210003468,210016112,210016257,210016641,210017559,210021576	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	65431828	65431887	65431843	+	RAMPAGE_only	3	4	22	0.600657	4.392317	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.954545
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	46335328	46335365	46335340	+	High_confidence	2	2	9	0.245723	2.500000	chr22	46335152	46335459	LTR|ERV1|MER4B	-	chr22	46335400	46357340	TRMU|NM_018006.4	+	46335400,46337778,46343261,46346421,46350290,46352120,46352263,46353766,46355443,46355989,46356841	46335846,46337944,46343368,46346544,46350463,46352174,46352330,46353867,46355588,46356072,46357340	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	105425002	105425011	105425002	-	RAMPAGE_only	4	4	8	0.218421	2.521641	chr2	105423600	105425018	LINE|L1|L1PA7	+	chr2	105374634	105438503	MSTRG.12494.11	-	105374634,105399502,105402209	105386540,105402095,105438503	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	121313981	121314021	121314020	+	RAMPAGE_only	25	25	108	2.948681	5.004287	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	21200825	21200827	21200825	+	High_confidence	4	6	8	0.218421	2.521641	chr6	21200835	21201081	LINE|L1|L1MC3	+	chr6	21200811	21231441	CDKAL1|ENST00000476517.1	+	21200811,21201109,21230847	21200892,21201274,21231441	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	147760601	147760609	147760601	-	High_confidence	334	342	507	13.842421	6.535814	chr1	147760317	147760652	LINE|L2|L2c	+	chr1	147756198	147760606	GJA5|ENST00000579774.2	-	147756198,147760498	147759271,147760606	0.990138
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	539513	539514	539513	+	RAMPAGE_only	7	7	7	0.191118	2.807355	chr9	539493	539786	SINE|Alu|AluJo	-	chr9	470293	746106	KANK1|NM_001256876.1	+	470293,470555,473193,539515,540507,676889,710803,730050,731157,732377,734747,738284,740791,742204,744490,745172	470374,470682,473273,539633,540667,677009,713464,730248,731266,732617,734835,738504,740934,742405,744589,746106	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr21	39443529	39443530	39443529	+	RAMPAGE_only	17	17	17	0.464144	3.572469	chr21	39441903	39443576	LINE|L2|L2b	-	chr21	39867316	39929397	PCP4|ENST00000328619.9	+	39867316,39898475,39928983	39867510,39898527,39929397	0.647059
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	57746128	57746129	57746128	+	High_confidence	21	21	21	0.573355	3.118275	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	34757079	34757104	34757103	+	High_confidence	5	5	9	0.245723	3.000000	chr6	34757127	34757285	LINE|L2|L2a	+	chr6	34757093	34773857	SNRPC|NR_029472.1	+	34757093,34762594,34767907,34770290,34773445	34757551,34762703,34767997,34770395,34773857	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	161206408	161206421	161206420	+	RAMPAGE_only	2	2	8	0.218421	2.807355	chr1	161206361	161206444	SINE|tRNA|LFSINE_Vert	+	chr1	161209238	161214239	NDUFS2|ENST00000483804.5	+	161209238,161209482,161209856,161210110,161210303,161210590,161212350,161212591,161213379,161213648,161213863,161214155	161209313,161209595,161209931,161210188,161210389,161210710,161212480,161212654,161213475,161213732,161213921,161214239	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	73837439	73837474	73837450	-	RAMPAGE_only	13	16	44	1.201315	3.492346	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.954545
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	66916979	66917014	66916979	+	RAMPAGE_only	1	1	8	0.218421	2.807355	chr5	66916558	66917882	LINE|L1|L1ME3G	-	chr5	66788686	67167051	MSTRG.17390.9	+	66788686,66899950,66916982,66963706,67054403,67090161,67094156,67095596,67100434,67102535,67104365,67110097,67114086,67118681,67121016,67130209,67131812,67133513,67134522,67136562,67142114,67142420,67144668,67145143,67149388,67152636,67153457,67160455,67162606,67163146	66788794,66899982,66959294,66963787,67054492,67090231,67094165,67095675,67100592,67102611,67104575,67110199,67114219,67118749,67121102,67130418,67131951,67133646,67134688,67136664,67142237,67142533,67144796,67145379,67149589,67152866,67153580,67160592,67162788,67167051	0.625000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	107220732	107220761	107220754	-	RAMPAGE_only	4	4	16	0.436842	3.506891	chr7	107220497	107220812	LTR|ERVL|LTR105_Mam	+	chr7	107201554	107563934	MSTRG.20366.1	-	107201554,107210525,107211098,107230614,107236449,107248395,107256731,107258272,107281299,107283570,107298141,107324439,107362032,107362307,107372594,107412501,107459670,107548110,107548277,107554284,107557975,107563802	107203630,107210605,107211225,107230691,107236687,107248499,107256794,107258383,107281399,107283732,107298346,107324521,107362110,107362420,107372760,107412632,107527357,107548180,107548332,107554342,107558115,107563934	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	74000430	74000448	74000430	+	RAMPAGE_only	2	2	9	0.245723	2.750000	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	148440492	148440516	148440515	+	RAMPAGE_only	3	3	8	0.218421	2.807355	chr5	148440564	148440673	SINE|Alu|AluJo	+	chr5	148394711	148442835	FBXO38|ENST00000513826.1	+	148394711,148398998,148401981,148402347,148404684,148406256,148409123,148410634,148414135,148415927,148416993,148423997,148425521,148433423,148433634,148438331,148439646,148440423,148441123,148441968	148394904,148399132,148402145,148402513,148404822,148406394,148409217,148410765,148414306,148416070,148417204,148424117,148425701,148433524,148433737,148438498,148439792,148440527,148441237,148442835	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	35239580	35239616	35239607	-	RAMPAGE_only	4	4	12	0.327631	2.913977	chr7	35239544	35239690	SINE|MIR|MIRb	+	chr7	35192266	35254147	MSTRG.19852.3	-	35192266,35204469,35231503,35244948,35248676,35249950,35253493	35202770,35204582,35241037,35245057,35248841,35250203,35254147	0.916667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	48868595	48868631	48868613	-	High_confidence	485	539	2338	63.833493	7.723696	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.981608
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	33706869	33706870	33706869	+	High_confidence	8	8	8	0.218421	3.000000	chr2	33706674	33707027	LTR|ERVL-MaLR|THE1A	+	chr2	33706885	34297753	LINC01320|ENST00000366209.6	+	33706885,33855687,33926839,33944427,34286642,34297467	33706953,33855753,33926968,33944553,34286746,34297753	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	167934756	167934778	167934756	+	High_confidence	7	9	20	0.546052	3.684184	chr5	167934647	167934759	DNA|hAT-Ac|OldhAT1	-	chr5	167934861	168047462	TENM2|ENST00000518693.1	+	167934861,167952587,167992943,168047426	167934920,167952822,167993182,168047462	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	52579438	52579439	52579438	+	RAMPAGE_only	4	6	6	0.163816	2.584963	chr6	52579191	52579722	LTR|ERVL-MaLR|MLT1F1	+	chr6	52578365	52583559	TRAM2-AS1|ENST00000605910.1	+	52578365,52578501,52579374,52582862	52578393,52578594,52579609,52583559	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	85378112	85378113	85378112	-	High_confidence	198	214	215	5.870060	4.599399	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.981395
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	87381459	87381470	87381469	-	RAMPAGE_only	11	11	24	0.655263	4.368523	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87326986	87383748	MSTRG.8974.9	-	87326986,87333885,87335303,87336154,87342876,87343597,87347173,87358410,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87358497,87360366,87383748	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	8842153	8842179	8842153	+	High_confidence	7	7	27	0.737170	4.282484	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.777778
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	15657883	15657884	15657883	+	RAMPAGE_only	7	7	7	0.191118	2.521641	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	50131139	50131175	50131139	-	High_confidence	42	44	145	3.958878	5.870795	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.979310
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	20674497	20674498	20674497	+	High_confidence	282	283	318	8.682229	5.355501	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.845912
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40411310	40411556	40411451	-	RAMPAGE_only	11	13	206	5.624337	4.617153	chr2	40411386	40411568	LINE|L1|L1M5	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.985437
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	133369966	133370021	133369966	-	RAMPAGE_only	3	4	23	0.627960	4.055958	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	83692016	83692026	83692022	+	RAMPAGE_only	3	3	10	0.273026	2.947703	chr11	83691943	83692136	SINE|MIR|MIRb	-	chr11	83645729	83725390	AP002370.2|ENST00000533669.5	+	83645729,83647503,83684448,83692020,83692928,83693731,83720829,83725191	83645837,83647594,83684525,83692075,83693071,83693810,83720985,83725390	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	91179357	91179384	91179357	-	High_confidence	3	3	6	0.163816	2.584963	chr12	91179305	91179397	SINE|MIR|MIRb	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	12522253	12522266	12522253	+	RAMPAGE_only	14	14	44	1.201315	4.129185	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.931818
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	104763732	104763757	104763755	+	High_confidence	7	11	34	0.928289	4.187889	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	0.970588
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	241235121	241235151	241235121	-	RAMPAGE_only	3	3	13	0.354934	3.084963	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241229223	241250937	HDLBP|ENST00000487169.5	-	241229223,241230758,241233819,241235120,241236614,241238648,241239601,241239900,241242459,241246751,241247055,241248002,241248243,241249840	241230269,241230944,241233963,241235594,241236769,241238787,241239820,241240122,241242678,241246883,241247142,241248116,241248348,241250937	0.615385
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	283490	283509	283508	+	High_confidence	7	12	15	0.409539	3.640224	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.866667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	167937137	167937150	167937149	+	High_confidence	5	5	10	0.273026	2.947703	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167937152	167993330	DCAF6|ENST00000455334.5	+	167937152,167951799,167966628,167974829,167987494,167991203,167993225	167937252,167951861,167966721,167975015,167987608,167991339,167993330	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	149755864	149755896	149755895	+	RAMPAGE_only	10	12	18	0.491447	3.836592	chr6	149755692	149755987	LINE|L2|L2a	-	chr6	149750043	149793632	PCMT1|ENST00000495487.1	+	149750043,149771161,149773137,149789953,149793548	149750265,149771266,149773169,149790058,149793632	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	133499138	133499149	133499138	-	High_confidence	2	2	7	0.191118	2.584963	chr8	133499058	133499257	SINE|MIR|MIRb	+	chr8	133476142	133499421	ST3GAL1|ENST00000520020.5	-	133476142,133499134,133499360	133476600,133499189,133499421	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	11351596	11351637	11351636	-	RAMPAGE_only	7	7	15	0.409539	3.640224	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.533333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	43053971	43054008	43053971	+	RAMPAGE_only	38	43	121	3.303615	4.969222	chr13	43052716	43054750	LINE|L1|L1PB1	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.942149
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	121582278	121582279	121582278	-	RAMPAGE_only	8	8	11	0.300329	3.121928	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121429095	121581015	KDM2B|NM_032590.4	-	121429095,121439856,121440815,121441069,121442156,121442991,121443679,121444011,121444449,121445274,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549459,121574546,121575780,121578801,121580785	121430469,121440075,121440977,121441233,121442836,121443030,121443793,121444272,121444536,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548983,121549638,121574593,121575859,121578946,121581015	0.727273
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	5726324	5726325	5726324	-	High_confidence	33	35	38	1.037499	4.639522	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.842105
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	8806813	8806860	8806859	-	High_confidence	13	13	28	0.764473	4.134336	chr2	8806591	8806879	SINE|Alu|AluSz6	-	chr2	8800206	8806378	KIDINS220|ENST00000471275.1	-	8800206,8802929,8806270	8800498,8803127,8806378	0.928571
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	33068834	33068915	33068834	-	RAMPAGE_only	4	4	35	0.955591	4.066677	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.942857
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	26956526	26956545	26956544	-	High_confidence	13	13	23	0.627960	3.820889	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.608696
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	116	116	116	3.167102	4.055708	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	152412480	152412498	152412488	-	High_confidence	3	3	12	0.327631	3.277613	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.916667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	143558019	143558020	143558019	+	High_confidence	12	12	12	0.327631	3.251629	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.916667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	4129116	4129136	4129116	+	RAMPAGE_only	2	2	8	0.218421	2.807355	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	80059918	80059933	80059918	+	High_confidence	108	122	265	7.235191	5.376093	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.988679
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	56645663	56645680	56645679	+	High_confidence	5	5	16	0.436842	3.640224	chr1	56645691	56645853	SINE|MIR|MIR3	+	chr1	56645387	56715334	PRKAA2|ENST00000610361.1	+	56645387,56671440,56674380,56691393,56692357,56693764,56695934,56703970,56706091,56707474	56645474,56671447,56674522,56691487,56692502,56693852,56696159,56704475,56706218,56715334	0.812500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	99893296	99893301	99893296	-	High_confidence	7	7	17	0.464144	3.702820	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.941176
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	6918679	6918680	6918679	-	High_confidence	6	6	6	0.163816	2.584963	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	99410041	99410057	99410041	+	RAMPAGE_only	2	2	9	0.245723	2.725481	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	69237149	69237172	69237169	-	RAMPAGE_only	3	3	14	0.382236	3.334679	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69168145	69320944	MSTRG.15153.1	-	69168145,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69195230,69196254,69196899,69198697,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69320888	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195141,69195364,69196396,69197038,69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69320944	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	91197654	91197689	91197683	+	RAMPAGE_only	2	2	8	0.218421	2.500000	chr8	91191844	91197868	LINE|L1|L1PA3	-	chr8	91102644	91219127	LRRC69|ENST00000343709.7	+	91102644,91189521,91200612,91218889	91102844,91189623,91200792,91219127	0.625000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	30567602	30567603	30567602	+	RAMPAGE_only	4	4	6	0.163816	2.584963	chr2	30567334	30567874	LTR|ERV1|LTR38A1	+	chr2	30447275	30644224	MSTRG.11965.10	+	30447275,30459551,30525586,30533115,30562145,30568059,30640116	30447383,30459722,30525755,30533314,30562292,30568176,30644224	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	158863386	158863409	158863400	+	RAMPAGE_only	28	36	139	3.795062	6.215045	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.892086
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	16899176	16899185	16899176	+	High_confidence	4	4	11	0.300329	2.921928	chr3	16899144	16899233	LINE|RTE-BovB|MamRTE1	+	chr3	16898977	17090594	MSTRG.14704.4	+	16898977,17009673,17014707,17042873,17067955,17089732	16899684,17012160,17014911,17042949,17068065,17090594	0.545455
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	12572736	12572758	12572747	-	RAMPAGE_only	2	2	10	0.273026	3.169925	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	123060124	123060256	123060168	-	High_confidence	29	36	309	8.436505	5.432715	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.682848
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	168532909	168533137	168532909	+	RAMPAGE_only	5	7	73	1.993090	4.705274	chr4	168532294	168533070	LINE|L1|HAL1ME	+	chr4	168497123	168572861	MSTRG.16951.5	+	168497123,168511422,168516511	168497194,168516451,168572861	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	33554683	33554696	33554695	+	High_confidence	3	3	8	0.218421	2.807355	chr7	33553757	33554962	LINE|L2|L2a	-	chr7	33554844	33606068	MSTRG.19844.17	+	33554844,33604864,33605194	33554984,33604975,33606068	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	3536839	3536899	3536862	-	High_confidence	22	22	211	5.760850	6.670770	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.800948
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	51403421	51403482	51403428	-	RAMPAGE_only	10	12	55	1.501643	4.171736	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.854545
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	202576716	202576814	202576813	+	RAMPAGE_only	18	19	65	1.774669	4.205243	chr1	202576730	202576958	SINE|MIR|MIR	-	chr1	202574917	202577250	PPP1R12B|ENST00000618451.1	+	202574917	202577250	0.938462
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	39026172	39026199	39026190	+	High_confidence	6	6	21	0.573355	3.787144	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.904762
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	2242922	2242923	2242922	+	High_confidence	23	23	23	0.627960	4.262692	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	35538533	35538553	35538533	-	RAMPAGE_only	13	13	38	1.037499	4.734512	chr1	35538308	35538616	SINE|Alu|AluSx	+	chr1	35451634	35554987	KIAA0319L|ENST00000440579.5	-	35451634,35453556,35454361,35456012,35460304,35462620,35466607,35470862,35474804,35478965,35506611,35554349,35554899	35451776,35453689,35454485,35456241,35460437,35462713,35466695,35470960,35474906,35479212,35507135,35554519,35554987	0.763158
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	9965312	9965321	9965320	+	RAMPAGE_only	9	9	15	0.409539	3.521641	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	151017826	151017892	151017891	+	RAMPAGE_only	3	3	15	0.409539	3.467720	chr1	151017915	151018141	SINE|MIR|MIRc	+	chr1	151024741	151035711	PRUNE1|ENST00000368934.1	+	151024741,151025514,151027232,151033805	151024795,151025673,151027327,151035711	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	65570509	65570536	65570521	+	High_confidence	59	112	315	8.600321	6.933969	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.568254
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	2881285	2881286	2881285	-	High_confidence	23	23	23	0.627960	4.175736	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.913043
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	20674449	20674458	20674457	+	High_confidence	4	4	15	0.409539	3.132915	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	158167223	158167229	158167223	-	RAMPAGE_only	4	4	9	0.245723	3.000000	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158124579	158172566	FAM198B|NM_016613.6	-	158124579,158130785,158155610,158170465,158172338	158127614,158131012,158155825,158171599,158172566	0.777778
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	20819089	20819129	20819094	-	RAMPAGE_only	10	10	23	0.627960	4.201841	chr10	20819067	20819353	LINE|L1|L1PA13	-	chr10	20809866	20835561	NEBL|ENST00000493005.5	-	20809866,20812768,20813938,20815624,20817599,20818703,20823207,20826446,20828529,20831195,20831472,20835512	20809898,20812940,20814043,20815717,20817692,20819516,20823300,20826539,20828634,20831306,20831583,20835561	0.521739
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40411727	40412236	40412011	-	RAMPAGE_only	8	8	233	6.361507	5.461154	chr2	40411898	40412150	SINE|MIR|MIR	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.991416
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	28984727	28984759	28984727	+	RAMPAGE_only	2	2	8	0.218421	2.807355	chr6	28984677	28984982	SINE|Alu|AluY	-	chr6	28986202	28987484	HCG15|ENST00000438190.1	+	28986202,28986312,28986676	28986232,28986506,28987484	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	6200543	6200571	6200570	-	High_confidence	8	8	45	1.228617	3.427702	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	59912469	59912494	59912478	-	High_confidence	3	3	12	0.327631	3.022055	chr1	59912461	59912714	SINE|MIR|MIRb	-	chr1	59893315	59913238	CYP2J2|ENST00000492633.5	-	59893315,59900964,59904365,59904870,59907785,59909783,59911607,59912161	59893829,59901103,59904516,59905058,59907927,59909960,59911768,59913238	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	27579238	27579245	27579244	+	RAMPAGE_only	5	5	10	0.273026	2.947703	chr12	27579150	27579292	SINE|MIR|MIR3	+	chr12	27524219	27647977	PPFIBP1|ENST00000535047.5	+	27524219,27578151,27633361,27634909,27646061,27647728	27524365,27578239,27633460,27635115,27646148,27647977	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	50159437	50159441	50159440	-	RAMPAGE_only	16	16	30	0.819078	4.589898	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	151687240	151687251	151687244	-	High_confidence	6	6	18	0.491447	3.725481	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	71423245	71423286	71423274	+	RAMPAGE_only	3	3	16	0.436842	3.875000	chr2	71423244	71423287	DNA|hAT-Ac|OldhAT1	+	chr2	71415922	71434869	MSTRG.12305.25	+	71415922,71424649,71426459,71428530,71431326,71433164,71434741	71424038,71424715,71427414,71428651,71431428,71433283,71434869	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	89516196	89516250	89516196	-	RAMPAGE_only	8	8	39	1.064802	4.938998	chr10	89516159	89516235	LINE|L2|L2a	+	chr10	89430293	89535556	SLC16A12|NM_213606.3	-	89430293,89436059,89438603,89441107,89443755,89462378,89534500,89535441	89433326,89436319,89439183,89441251,89443859,89462624,89534640,89535556	0.743590
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40491776	40492007	40492006	-	RAMPAGE_only	11	16	96	2.621050	4.733689	chr2	40491817	40493493	LINE|L1|L1PA3	+	chr2	40097269	40512435	MSTRG.12053.6	-	40097269,40115371,40139400,40160764,40164853,40170280,40174705,40174824,40175260,40178386,40428472,40453160,40462284,40472685	40111316,40115629,40139676,40160864,40164984,40170349,40174720,40174842,40175281,40178493,40430304,40462149,40472652,40512435	0.958333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	20423785	20423873	20423793	+	RAMPAGE_only	6	7	54	1.474341	4.349808	chr12	20423744	20423796	LTR|Gypsy|LTR81	+	chr12	20386238	20615000	MSTRG.4778.3	+	20386238,20556659,20613442	20504710,20556710,20615000	0.981481
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	169697672	169697716	169697672	+	RAMPAGE_only	2	2	9	0.245723	2.947703	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169662721	169723183	CLCN3|ENST00000504131.6	+	169662721,169663113,169663526,169680049,169687657,169689042,169690529,169692113,169695611,169697188,169703997,169706867,169713078,169719906	169662738,169663114,169663617,169680207,169687757,169689230,169690652,169692320,169695692,169697734,169704184,169707266,169713295,169723183	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	29293281	29293308	29293281	+	RAMPAGE_only	3	3	7	0.191118	2.807355	chr16	29293232	29293365	LTR|ERVL-MaLR|MLT1M	-	chr16	29291219	29372110	SNX29P2|ENST00000604430.1	+	29291219,29302286,29312349,29320927,29326346,29328561,29355786,29359264,29361249,29364683,29369534	29291876,29302388,29312589,29321095,29326483,29328624,29355968,29359335,29361495,29365059,29372110	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	79258920	79258935	79258934	+	High_confidence	4	4	10	0.273026	2.725481	chr4	79257987	79259677	LTR|ERV1|MER52A	+	chr4	79258780	79308654	LINC01088|ENST00000511241.5	+	79258780,79306690,79308272	79259039,79306728,79308654	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	169182813	169182839	169182832	-	High_confidence	9	10	36	0.982894	4.189542	chr6	169182607	169182961	LTR|ERVL-MaLR|THE1A	-	chr6	169175303	169182740	LINC02544|ENST00000564830.2	-	169175303,169179275,169182683	169175671,169179394,169182740	0.694444
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	20819257	20819269	20819257	-	RAMPAGE_only	4	4	16	0.436842	3.240224	chr10	20819067	20819353	LINE|L1|L1PA13	-	chr10	20809866	20835561	NEBL|ENST00000493005.5	-	20809866,20812768,20813938,20815624,20817599,20818703,20823207,20826446,20828529,20831195,20831472,20835512	20809898,20812940,20814043,20815717,20817692,20819516,20823300,20826539,20828634,20831306,20831583,20835561	0.937500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	30534453	30534457	30534453	+	RAMPAGE_only	3	3	7	0.191118	2.584963	chr17	30534326	30534548	SINE|MIR|MIRb	-	chr17	30529687	30542416	ALOX12P1|ENST00000579299.2	+	30529687,30530307,30531117,30534684,30535092,30535367,30541758,30541963,30542242	30529765,30530451,30531281,30534845,30535228,30535495,30541834,30542131,30542416	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	231822785	231822836	231822785	-	RAMPAGE_only	4	4	15	0.409539	3.506891	chr1	231822644	231823057	LTR|ERVL-MaLR|MSTB1	-	chr1	231809961	231847801	MSTRG.2250.2	-	231809961,231822724,231847518	231814291,231822834,231847801	0.733333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	67920085	67920093	67920092	+	High_confidence	3	3	8	0.218421	2.521641	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	0.625000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	997313	997342	997318	-	High_confidence	120	125	373	10.183872	6.424879	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.911528
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr21	33909085	33909156	33909085	-	High_confidence	6	7	54	1.474341	4.620920	chr21	33908880	33909038	DNA|hAT-Charlie|MER5A1	-	chr21	33903455	33909095	ATP5PO|ENST00000418933.1	-	33903455,33903934,33907340,33909081	33903656,33904021,33907453,33909095	0.981481
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	40894538	40894544	40894543	+	High_confidence	5	5	10	0.273026	3.169925	chr15	40894565	40894630	LINE|CR1|X6A_LINE	+	chr15	40894466	40902861	VPS18|ENST00000558474.1	+	40894466,40895937,40898906,40902615	40894859,40896079,40898998,40902861	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	35211152	35211762	35211443	-	RAMPAGE_only	14	15	452	12.340778	6.831084	chr7	35210414	35211538	LINE|L1|L1ME1	-	chr7	35192266	35254147	MSTRG.19852.4	-	35192266,35208919,35210392,35240878,35244948,35248676,35249950	35208645,35210257,35231580,35241037,35245057,35248841,35254147	0.997788
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	760924	760925	760924	+	High_confidence	4	4	6	0.163816	2.584963	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	99906528	99906574	99906545	-	High_confidence	3	3	27	0.737170	4.356558	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	87530813	87530814	87530813	-	High_confidence	12	12	13	0.354934	3.418296	chr4	87530812	87530989	SINE|MIR|MIR1_Amn	-	chr4	87494439	87531049	SPARCL1|ENST00000512317.5	-	87494439,87494980,87499520,87529044,87530544,87530977	87494598,87495127,87499585,87529101,87530631,87531049	0.615385
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	28165286	28165304	28165286	+	RAMPAGE_only	34	34	143	3.904273	4.647407	chr2	28165020	28165437	LINE|L2|L2b	-	chr2	27890792	28338901	BABAM2|ENST00000361704.6	+	27890792,27894532,27929831,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28310081,28338449	27890842,27894684,27929908,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28310153,28338901	0.923077
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	155282784	155282820	155282798	-	RAMPAGE_only	17	17	102	2.784866	5.926112	chr6	155282731	155283026	SINE|Alu|AluY	-	chr6	155256129	155314483	TFB1M|NM_016020.3	-	155256129,155260272,155285157,155296952,155298476,155311187,155314295	155258082,155260400,155285277,155297104,155298585,155311339,155314483	0.725490
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	31587007	31587010	31587009	+	High_confidence	13	18	26	0.709868	4.293661	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.807692
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	20833823	20833852	20833851	-	RAMPAGE_only	2	2	6	0.163816	2.584963	chr13	20833640	20833897	LINE|L2|L2b	-	chr13	20777328	20843278	MSTRG.5824.2	-	20777328,20786964,20787480,20788485,20790461,20796075,20796763,20799164,20800155,20800830,20807456,20808435,20809082,20809790,20821703,20822131,20827066,20842894,20843131	20783919,20787057,20787598,20788616,20790580,20796256,20797057,20799339,20800325,20800990,20807634,20808581,20809225,20809967,20821878,20822289,20827179,20843048,20843278	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	13419702	13419718	13419713	-	RAMPAGE_only	4	6	16	0.436842	3.373557	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.812500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	35611920	35611962	35611961	-	RAMPAGE_only	5	5	18	0.491447	3.690117	chr22	35611957	35612110	SINE|MIR|MIRb	-	chr22	35606763	35615713	MB|ENST00000401702.5	-	35606763,35610883,35615573	35607443,35611106,35615713	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	46560136	46560168	46560144	+	RAMPAGE_only	13	14	62	1.692762	5.054609	chr2	46559732	46560392	LINE|L1|HAL1	-	chr2	46576127	46577125	RHOQ|ENST00000494370.1	+	46576127,46576560	46576251,46577125	0.709677
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	32075821	32075822	32075821	+	High_confidence	25	25	33	0.900986	4.245469	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32075835	32157216	MSTRG.6446.1	+	32075835,32076457,32090501,32117139,32146262,32149901,32152422,32154620	32076217,32076657,32094386,32117287,32146340,32150033,32152528,32157216	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	218287266	218287306	218287279	-	High_confidence	154	154	364	9.938149	6.218102	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.799451
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	67106374	67106405	67106374	-	RAMPAGE_only	2	2	8	0.218421	2.521641	chr10	67105937	67106485	LINE|RTE-X|L4_B_Mam	+	chr10	67045672	67180443	MSTRG.2771.6	-	67045672,67128313,67171639	67128238,67171546,67180443	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	30971696	30971706	30971705	+	High_confidence	3	3	9	0.245723	3.000000	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	27445106	27445120	27445119	-	RAMPAGE_only	9	9	38	1.037499	4.662573	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.921053
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	62815309	62815310	62815309	+	RAMPAGE_only	13	13	15	0.409539	3.807355	chr15	62815347	62815498	LINE|CR1|L3	+	chr15	62740444	62841486	TLN2|ENST00000489129.5	+	62740444,62748350,62750401,62752304,62753772,62761680,62762271,62763562,62766320,62770963,62776763,62781139,62783770,62792640,62796126,62797218,62800367,62800652,62805599,62809924,62819515,62820485,62833503,62835736,62835890,62838855,62840481	62740769,62748444,62750491,62752427,62755693,62761821,62762453,62763695,62766422,62771134,62776910,62781241,62783890,62792787,62796293,62797402,62800493,62800769,62805785,62810032,62819621,62820610,62833629,62835799,62836073,62838981,62841486	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	33130041	33130055	33130041	+	RAMPAGE_only	4	4	8	0.218421	2.521641	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	192925770	192925804	192925803	-	High_confidence	6	6	10	0.273026	2.947703	chr1	192925361	192925790	DNA|TcMar-Tigger|Tigger2a	-	chr1	192517636	192925804	AL390957.1|ENST00000644058.1	-	192517636,192567146,192593598,192764807,192766038,192925611	192517963,192567216,192593657,192764955,192766194,192925804	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	6739081	6739096	6739081	-	High_confidence	15	15	49	1.337828	5.165730	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6704670	6739030	AL031123.1|ENST00000648205.1	-	6704670,6710871,6711696,6738908	6705078,6711059,6711858,6739030	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	57451531	57451598	57451578	+	RAMPAGE_only	18	18	120	3.276313	4.829842	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.983333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	12103375	12103382	12103375	+	RAMPAGE_only	4	5	18	0.491447	4.058814	chr6	12103250	12103431	SINE|MIR|MIRb	-	chr6	12012701	12120180	HIVEP1|ENST00000478545.1	+	12012701,12015525,12089183,12119889	12012789,12015668,12089237,12120180	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	15001807	15001830	15001807	+	High_confidence	5	6	24	0.655263	4.168296	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.541667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	96638016	96638059	96638022	-	High_confidence	10	10	62	1.692762	4.865422	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.725806
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	65430347	65430776	65430775	+	RAMPAGE_only	79	82	529	14.443079	6.013754	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998110
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	30429288	30429289	30429288	-	RAMPAGE_only	8	11	11	0.300329	3.459432	chr13	30428989	30429302	SINE|Alu|AluSq2	+	chr13	30202629	30307487	KATNAL1|NM_032116.4	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30307330	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307487	0.727273
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	5003069	5003109	5003069	+	High_confidence	12	12	60	1.638156	5.006234	chr16	5003026	5003140	SINE|MIR|MIR	-	chr16	5003068	5019623	MSTRG.8262.3	+	5003068,5003401,5005913,5007351,5008420,5011094,5014858	5003158,5003573,5006048,5007486,5008648,5011273,5019623	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	14273834	14273850	14273834	-	RAMPAGE_only	2	2	7	0.191118	2.521641	chr9	14273766	14273878	LINE|L2|L2	-	chr9	14150179	14313667	MSTRG.21718.20	-	14150179,14179726,14273487,14287738,14313481	14155893,14179780,14287171,14307520,14313667	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	106562018	106562034	106562033	-	High_confidence	2	2	7	0.191118	2.584963	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	15696938	15697036	15697035	+	RAMPAGE_only	8	8	42	1.146709	4.855790	chr5	15696923	15697048	LINE|L2|L2c	+	chr5	15500381	15820400	MSTRG.17106.2	+	15500381,15615982,15733909	15500713,15733294,15820400	0.928571
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	144063549	144063555	144063554	-	High_confidence	4	4	8	0.218421	2.521641	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144058886	144063965	OPLAH|ENST00000567871.2	-	144058886,144058979,144059598,144059861,144063699	144058896,144059079,144059790,144060085,144063965	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40336806	40336927	40336844	-	RAMPAGE_only	5	5	58	1.583551	5.031157	chr2	40336790	40336954	SINE|MIR|MIRb	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.948276
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	98733171	98733222	98733171	+	High_confidence	10	10	56	1.528946	4.953967	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.803571
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	143966119	143966148	143966138	-	RAMPAGE_only	2	3	13	0.354934	3.251629	chr6	143966082	143966184	LINE|L2|L2	+	chr6	143940301	143968838	PLAGL1|ENST00000392307.2	-	143940301,143942506,143964786	143942388,143942663,143968838	0.923077
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	71300001	71300460	71300459	+	RAMPAGE_only	14	16	319	8.709531	5.863663	chrX	71300434	71300519	SINE|Alu|AluSx	-	chrX	71291994	71301168	NONO|ENST00000490044.5	+	71291994,71294218,71296564,71296850,71297376,71297835,71298468,71298706,71299941	71293041,71294528,71296660,71297047,71297461,71297938,71298508,71298816,71301168	0.993730
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	44912628	44912638	44912628	-	High_confidence	18	18	33	0.900986	4.301109	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	178793753	178793778	178793753	-	RAMPAGE_only	2	2	18	0.491447	3.969816	chr2	178793595	178793814	SINE|Alu|AluSz6	+	chr2	178786088	178794954	TTN|ENST00000436599.1	-	178786088,178789359,178792071,178793403,178794398,178794921	178786141,178789497,178792197,178793541,178794551,178794954	0.777778
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	32834221	32834240	32834221	-	RAMPAGE_only	9	9	17	0.464144	3.500000	chr12	32834048	32834260	LINE|L2|L2c	+	chr12	32821466	32824405	PKP2|ENST00000546498.1	-	32821466,32822466,32824044	32821529,32822631,32824405	0.647059
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	49657348	49657356	49657348	-	High_confidence	7	8	13	0.354934	3.084963	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.538462
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	110936582	110936585	110936584	+	High_confidence	109	167	198	5.405916	5.203793	chr12	110936431	110936780	LTR|ERVL-MaLR|THE1D	+	chr12	110936601	110937451	LINC01405|ENST00000331096.2	+	110936601,110937184	110936698,110937451	0.873737
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	64279566	64280157	64279601	-	RAMPAGE_only	19	26	583	15.917419	6.806671	chr4	64279257	64279568	SINE|Alu|AluJr	-	chr4	64277701	64409398	MSTRG.16353.5	-	64277701,64281040,64281473,64289709,64299973,64305165,64309825,64314647,64322688,64328511,64375171,64409117	64280199,64281086,64281559,64289767,64300017,64305238,64313110,64314763,64322792,64328556,64375223,64409398	0.996569
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40293053	40293233	40293108	-	RAMPAGE_only	11	12	163	4.450325	5.053732	chr2	40292987	40293144	LINE|L2|L2c	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	174161446	174161447	174161446	+	RAMPAGE_only	5	5	8	0.218421	2.807355	chr1	174161256	174161539	SINE|Alu|AluSp	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	5068731	5068738	5068736	+	RAMPAGE_only	2	4	8	0.218421	2.521641	chr9	5068306	5068768	LINE|L2|L2c	-	chr9	5041692	5128183	JAK2|NM_001322204.1	+	5041692,5044402,5050685,5054562,5055668,5064882,5066677,5069021,5069924,5072491,5073697,5077452,5078305,5080228,5080532,5081724,5089673,5090445,5090738,5123003,5126332,5126683	5041907,5044520,5050831,5054884,5055788,5065040,5066789,5069208,5070052,5072626,5073785,5077580,5078444,5080380,5080683,5081861,5089863,5090570,5090911,5123121,5126446,5128183	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	48753676	48753677	48753676	-	High_confidence	14	15	15	0.409539	3.521641	chr19	48753519	48753902	LTR|ERVK|LTR13A	-	chr19	48748010	48753660	FUT1|ENST00000645652.1	-	48748010,48752489,48752891,48753324,48753647	48751283,48752725,48753122,48753563,48753660	0.933333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	50756548	50756601	50756600	-	RAMPAGE_only	5	5	26	0.709868	4.469670	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.961538
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	203040732	203040840	203040816	+	RAMPAGE_only	32	35	175	4.777956	6.001551	chr1	203040699	203040878	SINE|MIR|MIRb	-	chr1	203034483	203078735	PPFIA4|ENST00000295706.8	+	203034483,203034702,203035238,203035558,203037173,203038946,203043396,203043930,203044378,203044695,203045367,203045840,203046247,203048226,203048570,203048917,203049675,203051768,203053752,203055431,203056119,203056374,203056783,203059177,203059769,203060216,203060969,203063827,203067694,203068452,203071691,203075576,203076340	203034589,203034780,203035322,203035640,203037202,203039242,203043498,203044095,203044453,203044785,203045559,203045987,203046382,203048310,203048714,203048980,203049767,203051877,203053961,203055672,203056155,203056508,203056950,203059271,203059851,203060417,203061032,203064003,203067792,203068628,203071760,203075757,203078735	0.862857
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	212792424	212792470	212792444	-	High_confidence	7	7	32	0.873683	4.640320	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.843750
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	5680240	5680261	5680248	-	High_confidence	19	20	82	2.238814	5.355891	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.926829
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	15723980	15723981	15723980	+	RAMPAGE_only	930	933	1066	29.104578	4.478858	chr5	15723863	15724297	LINE|L1|L1M4c	-	chr5	15500381	15820400	MSTRG.17106.2	+	15500381,15615982,15733909	15500713,15733294,15820400	0.996248
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	160234252	160234266	160234252	+	RAMPAGE_only	7	7	16	0.436842	3.077820	chr5	160234017	160234427	LTR|ERV1|MER83	+	chr5	160232034	160238716	FABP6|ENST00000521362.1	+	160232034,160234819,160238605	160232273,160234909,160238716	0.937500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	50756723	50756742	50756741	-	RAMPAGE_only	5	6	12	0.327631	3.095795	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	196404216	196404273	196404272	-	RAMPAGE_only	10	11	36	0.982894	4.547439	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225782	196465387	KCNT2|ENST00000498426.5	-	196225782,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196317173,196331155,196333846,196340340,196342078,196373139,196398562,196423049,196425851,196428104,196429576,196465292	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196317269,196331261,196334060,196340570,196342228,196373248,196398671,196423113,196425988,196428269,196429757,196465387	0.694444
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	35229926	35229927	35229926	-	RAMPAGE_only	9	9	10	0.273026	3.169925	chr7	35229791	35230004	SINE|MIR|MIRc	-	chr7	35192266	35254147	MSTRG.19852.4	-	35192266,35208919,35210392,35240878,35244948,35248676,35249950	35208645,35210257,35231580,35241037,35245057,35248841,35254147	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	110365671	110365696	110365671	+	RAMPAGE_only	2	2	9	0.245723	2.641604	chr4	110365657	110365806	SINE|MIR|MIRb	-	chr4	110476072	110565285	ENPEP|ENST00000265162.9	+	110476072,110488540,110491032,110506636,110509652,110510244,110513414,110515376,110520007,110520214,110531197,110542750,110543014,110548175,110549345,110549527,110549715,110553314,110559646,110561405	110477058,110488682,110491164,110506757,110509807,110510358,110513549,110515442,110520073,110520366,110531277,110542887,110543070,110548326,110549419,110549632,110549886,110553455,110559725,110565285	0.555556
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	194486575	194486626	194486575	-	High_confidence	4	4	32	0.873683	4.288910	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194403464	194486659	MSTRG.15949.9	-	194403464,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194486659	0.906250
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	95516103	95516123	95516120	+	High_confidence	3	4	10	0.273026	2.725481	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	73841827	73841946	73841876	-	High_confidence	13	15	91	2.484537	4.840270	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.901099
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	124298783	124298952	124298951	-	RAMPAGE_only	5	5	58	1.583551	3.768596	chr8	124298827	124299049	DNA|hAT-Charlie|MER20	-	chr8	124278529	124302262	MSTRG.21503.1	-	124278529	124302262	0.982759
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	41243852	41243875	41243852	-	RAMPAGE_only	8	8	24	0.655263	3.568030	chr1	41243611	41244191	LTR|ERVL-MaLR|MLT1E3	-	chr1	41185983	41242154	SCMH1|ENST00000488592.1	-	41185983,41242058	41186250,41242154	0.583333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	231847665	231847707	231847665	-	High_confidence	1409	1432	3304	90.207811	7.980236	chr1	231847541	231847935	LINE|L2|L2a	+	chr1	231809961	231847801	MSTRG.2250.2	-	231809961,231822724,231847518	231814291,231822834,231847801	0.688559
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	108451076	108451094	108451076	+	RAMPAGE_only	2	3	13	0.354934	2.918296	chr2	108451073	108451151	LINE|RTE-BovB|MamRTE1	-	chr2	108449883	108472899	GCC2|ENST00000409896.1	+	108449883,108451027,108452398,108468979,108469650,108472826	108449994,108451112,108452466,108469084,108472116,108472899	0.846154
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	84139274	84139284	84139283	-	RAMPAGE_only	4	4	13	0.354934	3.418296	chr16	84139153	84139637	LTR|ERVL-MaLR|MLT1D	+	chr16	84130318	84144438	HSDL1|ENST00000568857.5	-	84130318,84131101,84135543,84144290	84130431,84131327,84135605,84144438	0.692308
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	83560227	83560252	83560227	-	RAMPAGE_only	3	3	9	0.245723	2.725481	chr9	83560161	83560431	LTR|ERVL-MaLR|MLT1H	+	chr9	83242989	83538546	FRMD3|ENST00000376438.5	-	83242989,83248054,83290602,83298747,83299111,83309535,83310484,83311886,83313659,83335515,83343189,83349678,83372912,83389603,83538084	83243215,83248516,83290727,83298816,83299186,83309624,83310548,83311975,83313747,83335639,83343287,83349757,83372955,83389708,83538546	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	105429801	105429979	105429801	-	RAMPAGE_only	17	21	146	3.986181	5.247877	chr2	105429733	105429833	SINE|MIR|MIR	+	chr2	105374634	105438503	MSTRG.12494.11	-	105374634,105399502,105402209	105386540,105402095,105438503	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40469383	40469581	40469508	-	RAMPAGE_only	10	10	147	4.013483	5.194910	chr2	40469192	40469553	LTR|ERVL-MaLR|MSTA	+	chr2	40097269	40512435	MSTRG.12053.6	-	40097269,40115371,40139400,40160764,40164853,40170280,40174705,40174824,40175260,40178386,40428472,40453160,40462284,40472685	40111316,40115629,40139676,40160864,40164984,40170349,40174720,40174842,40175281,40178493,40430304,40462149,40472652,40512435	0.993197
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	79258867	79258870	79258869	+	High_confidence	979	1232	1442	39.370358	5.637948	chr4	79257987	79259677	LTR|ERV1|MER52A	+	chr4	79258780	79308654	LINC01088|ENST00000511241.5	+	79258780,79306690,79308272	79259039,79306728,79308654	0.951456
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	10007653	10007738	10007737	+	RAMPAGE_only	2	2	15	0.409539	3.664498	chr1	10007765	10008067	SINE|Alu|AluSx1	+	chr1	9997215	10016020	RBP7|ENST00000294435.7	+	9997215,10007569,10008172,10015781	9997331,10007748,10008274,10016020	0.933333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	8834335	8834379	8834378	-	RAMPAGE_only	3	3	10	0.273026	3.321928	chr2	8834174	8834387	LINE|L2|L2a	+	chr2	8730200	8837596	KIDINS220|ENST00000488729.5	-	8730200,8733443,8734654,8736867,8750111,8751465,8770669,8776747,8778638,8778895,8779673,8785740,8786205,8788646,8789879,8791059,8793809,8796770,8798201,8800399,8802929,8806270,8812394,8813236,8817617,8818694,8825742,8826985,8837479	8731982,8733680,8734753,8736999,8750335,8751644,8770832,8776892,8778727,8779139,8779814,8786030,8786357,8788812,8790059,8791224,8793987,8796869,8798300,8800498,8803127,8806369,8812493,8813335,8817716,8818793,8825913,8827129,8837596	0.700000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	10710653	10710654	10710653	-	High_confidence	11	11	12	0.327631	3.095795	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.583333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	154928503	154928504	154928503	+	High_confidence	9	9	14	0.382236	3.546594	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.785714
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	237066980	237067117	237067043	+	RAMPAGE_only	6	6	68	1.856577	4.839510	chr1	237066935	237067755	LINE|L1|L1MD2	-	chr1	237051334	237078092	MSTRG.2287.1	+	237051334,237056717	237056694,237078092	0.985294
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	76740500	76740518	76740508	+	RAMPAGE_only	51	55	134	3.658549	4.622639	chr17	76740464	76740701	SINE|MIR|MIR	+	chr17	76742190	76769840	MFSD11|ENST00000585584.5	+	76742190,76743397,76744321,76745392,76754046,76767385,76769745	76742273,76743456,76744466,76745439,76754087,76767451,76769840	0.753731
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	32446972	32447013	32446977	+	High_confidence	24	27	63	1.720064	4.961817	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40507616	40507895	40507623	-	RAMPAGE_only	6	6	110	3.003287	5.295819	chr2	40507600	40507822	SINE|MIR|MIR	+	chr2	40097269	40512435	MSTRG.12053.6	-	40097269,40115371,40139400,40160764,40164853,40170280,40174705,40174824,40175260,40178386,40428472,40453160,40462284,40472685	40111316,40115629,40139676,40160864,40164984,40170349,40174720,40174842,40175281,40178493,40430304,40462149,40472652,40512435	0.972727
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	109383446	109383500	109383446	-	High_confidence	4	5	43	1.174012	4.327169	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	93017503	93017515	93017503	-	High_confidence	9	9	16	0.436842	3.640224	chr8	93017253	93017736	LTR|ERVL|LTR79	-	chr8	92885319	93017673	TRIQK|ENST00000520686.5	-	92885319,92891988,92916928,92954405,93017608	92886735,92892074,92917010,92954564,93017673	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	113878754	113878755	113878754	-	RAMPAGE_only	15	15	15	0.409539	3.906891	chr11	113878589	113878950	LTR|ERVL-MaLR|THE1A	-	chr11	113797873	113875570	USP28|ENST00000003302.8	-	113797873,113801482,113803157,113803797,113804672,113804867,113806488,113808297,113809062,113812275,113813884,113815173,113817657,113823604,113827232,113829196,113830866,113831919,113833419,113834248,113840597,113841662,113852500,113854257,113875444	113799415,113801678,113803281,113803877,113804751,113805046,113806584,113808437,113809254,113812504,113813955,113815382,113817837,113823700,113827360,113829345,113830943,113831993,113833557,113834335,113840757,113841768,113852633,113854335,113875570	0.933333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	8376183	8376200	8376199	+	RAMPAGE_only	5	5	10	0.273026	2.947703	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8121851	8406666	PTPRM|ENST00000577827.5	+	8121851,8143646,8244057,8247844,8296367,8314780,8319177,8343422,8370889,8376045,8376461,8379166,8380295,8384560,8387071,8394475,8406108	8122316,8143779,8244209,8247919,8296455,8314857,8319214,8343520,8371006,8376200,8378414,8379340,8380427,8384686,8387235,8394611,8406666	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40504042	40504088	40504087	-	RAMPAGE_only	4	4	17	0.464144	3.807764	chr2	40503425	40505123	LINE|L1|L1MA1	+	chr2	40097269	40512435	MSTRG.12053.6	-	40097269,40115371,40139400,40160764,40164853,40170280,40174705,40174824,40175260,40178386,40428472,40453160,40462284,40472685	40111316,40115629,40139676,40160864,40164984,40170349,40174720,40174842,40175281,40178493,40430304,40462149,40472652,40512435	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	102935526	102935590	102935561	+	RAMPAGE_only	2	2	14	0.382236	3.235926	chr5	102935121	102935685	LINE|L1|L1ME4b	-	chr5	102865243	102949573	MSTRG.17690.12	+	102865243,102865822,102867272,102901355,102913933,102924956,102926584,102932610,102948377,102949536	102865272,102866284,102867393,102901413,102914021,102925042,102932457,102946885,102948445,102949573	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	116648841	116648917	116648864	-	RAMPAGE_only	7	8	57	1.556249	5.043073	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	157275094	157275095	157275094	+	RAMPAGE_only	10	11	11	0.300329	2.846439	chr1	157274375	157275504	LTR|ERV1|HERVFH21-int	-	chr1	157280715	157283068	AL138900.3|ENST00000607010.1	+	157280715,157282577	157280853,157283068	0.545455
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	119476595	119476628	119476595	+	High_confidence	2	2	8	0.218421	2.750000	chr2	119476396	119476640	LTR|Gypsy|MamGypLTR3	+	chr2	119476447	119487346	AC013275.1|ENST00000413602.1	+	119476447,119485838	119476958,119487346	0.625000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	25296894	25296931	25296930	+	RAMPAGE_only	4	4	16	0.436842	3.906891	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	0.937500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	200411676	200411684	200411683	+	High_confidence	7	7	15	0.409539	3.093069	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411693	200478360	AC104461.1|ENST00000647823.1	+	200411693,200444617,200472040,200473908,200477967	200411962,200444945,200472119,200474186,200478360	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	12522766	12522776	12522775	+	RAMPAGE_only	5	5	17	0.464144	3.625000	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.941176
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	117877468	117877469	117877468	-	High_confidence	6	6	7	0.191118	2.584963	chr11	117877415	117877598	SINE|MIR|MIRb	+	chr11	117836975	117877486	FXYD6|NM_001164831.2	-	117836975,117839780,117840318,117841147,117841790,117841989,117842718,117877298	117838277,117839830,117840368,117841184,117841865,117842028,117842781,117877486	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	36594721	36594731	36594730	+	High_confidence	4	4	8	0.218421	2.807355	chr15	36594706	36594759	SINE|tRNA|LFSINE_Vert	+	chr15	36594868	36808489	C15orf41|NM_001290232.1	+	36594868,36644277,36645222,36654097,36657832,36691684,36692125,36697322,36709222,36709855,36808323	36594918,36644323,36645287,36654158,36657905,36691764,36692175,36697390,36709288,36709961,36808489	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	35320229	35320272	35320262	+	RAMPAGE_only	24	24	91	2.484537	5.961995	chr1	35320238	35320853	LTR|ERVL|MER21C	+	chr1	35268966	35421944	ZMYM4|NM_005095.2	+	35268966,35325359,35358924,35361193,35361618,35370028,35370371,35381258,35381545,35385441,35386073,35387002,35387453,35388909,35389947,35392211,35392646,35393594,35396551,35397376,35398412,35398863,35399481,35405022,35405372,35408007,35413971,35415465,35418442,35419469	35269085,35325405,35359446,35361255,35361789,35370113,35370627,35381433,35381758,35385592,35386189,35387278,35387604,35389082,35390098,35392352,35392684,35393739,35396670,35397545,35398466,35399043,35399576,35405194,35405468,35408159,35414083,35415714,35418572,35421944	0.824176
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	92536651	92536704	92536703	-	High_confidence	8	13	47	1.283222	5.393127	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.893617
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	17895504	17895512	17895511	-	High_confidence	23	25	54	1.474341	5.081417	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.962963
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	128921939	128921961	128921960	+	High_confidence	7	7	13	0.354934	3.546594	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.846154
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	18082561	18082593	18082585	-	High_confidence	4	6	19	0.518750	4.037401	chr8	18082289	18082821	LTR|ERV1|MER90a	+	chr8	18066901	18083184	ASAH1|ENST00000636269.1	-	18066901,18069791,18071299,18075540,18083121	18067298,18069878,18071390,18075587,18083184	0.736842
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	77532106	77532107	77532106	+	High_confidence	26	27	37	1.010196	4.628108	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.945946
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	226364261	226364323	226364261	-	High_confidence	16	16	77	2.102301	5.509937	chr1	226364119	226364211	SINE|MIR|MIRb	-	chr1	226361318	226364372	PARP1|ENST00000463968.5	-	226361318,226361968,226363098,226363942	226361541,226362083,226363160,226364372	0.922078
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40480576	40480624	40480594	-	RAMPAGE_only	2	3	15	0.409539	3.324863	chr2	40480247	40480602	LTR|ERVL-MaLR|MLT1A0	+	chr2	40097269	40512435	MSTRG.12053.6	-	40097269,40115371,40139400,40160764,40164853,40170280,40174705,40174824,40175260,40178386,40428472,40453160,40462284,40472685	40111316,40115629,40139676,40160864,40164984,40170349,40174720,40174842,40175281,40178493,40430304,40462149,40472652,40512435	0.933333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	101217578	101217599	101217598	-	High_confidence	9	9	41	1.119407	4.875146	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.951220
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	62376620	62376671	62376632	+	High_confidence	6	6	18	0.491447	3.419382	chr9	62376600	62376639	SINE|MIR|MIRb	+	chr9	62376516	62434385	FGF7P6|ENST00000452826.2	+	62376516,62432875	62376813,62434385	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	36420726	36420744	36420743	+	High_confidence	3	3	8	0.218421	2.750000	chr7	36420775	36420884	LINE|L2|L2b	+	chr7	36420223	36426034	ANLN|ENST00000446635.5	+	36420223,36420611,36421856,36422632,36423816,36424544,36424685,36425701,36426014	36420314,36420744,36421992,36422809,36423943,36424593,36424742,36425740,36426034	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	241504052	241504183	241504052	-	RAMPAGE_only	12	13	76	2.074998	5.338337	chr1	241503964	241504054	SINE|MIR|MIRc	+	chr1	241497602	241519761	FH|ENST00000366560.3	-	241497602,241500436,241502442,241504041,241506002,241508602,241511966,241513602,241517181,241519590	241497970,241500590,241502570,241504245,241506168,241508785,241512143,241513713,241517316,241519761	0.894737
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	178648500	178648845	178648681	-	RAMPAGE_only	15	16	246	6.716441	6.018885	chr2	178648406	178648709	SINE|Alu|AluSz	-	chr2	178525988	178651520	MSTRG.13021.3	-	178525988,178527445,178528273,178528527,178529959,178530240,178535981,178536937,178537341,178538539,178538945,178539381,178540067,178541281,178542263,178542661,178543068,178543833,178544200,178545387,178545819,178546211,178546599,178547002,178547406,178549569,178549985,178550966,178551629,178553501,178553913,178554452,178554864,178556847,178557252,178557647,178558340,178559310,178576528,178576922,178577601,178577987,178578610,178578805,178579560,178579938,178580321,178581498,178581905,178582295,178582939,178583606,178584275,178584668,178585071,178586504,178587117,178587515,178587898,178588537,178591598,178591977,178592378,178592774,178593172,178593567,178593960,178594343,178595506,178597537,178597907,178598505,178598747,178599145,178599553,178600853,178601264,178601657,178601881,178602001,178602281,178603875,178604707,178604986,178605413,178607020,178607400,178607784,178608177,178608605,178609207,178609683,178610089,178610992,178611371,178611757,178612056,178612276,178612772,178613160,178613750,178614051,178614465,178614846,178615306,178615640,178616478,178616728,178617119,178617324,178617778,178618188,178618583,178619620,178619987,178620216,178620714,178621101,178621474,178621839,178622669,178624464,178625272,178629300,178630240,178630803,178631033,178632146,178632525,178632917,178633186,178633412,178633816,178634365,178634722,178635164,178635439,178635962,178636397,178637368,178639698,178640047,178640540,178641240,178642236,178646132	178527307,178527748,178528427,178529219,178530116,178535849,178536575,178537243,178537917,178538839,178539251,178539966,178540370,178541584,178542563,178542949,178543662,178544115,178544506,178545693,178546116,178546502,178546905,178547305,178549473,178549869,178550273,178551260,178553396,178553807,178554216,178554752,178555152,178557144,178557555,178558235,178558637,178576416,178576831,178577510,178577898,178578185,178578715,178579393,178579848,178580229,178580609,178581804,178582208,178582592,178583227,178583906,178584578,178584968,178585347,178586807,178587417,178587800,178588219,178591504,178591892,178592277,178592660,178593083,178593475,178593867,178594242,178594646,178595809,178597819,178598058,178598654,178599062,178599445,178599850,178601171,178601564,178601787,178601914,178602150,178602590,178604305,178604898,178605295,178605713,178607314,178607685,178608081,178608477,178608908,178609570,178609986,178610389,178611271,178611677,178611954,178612162,178612576,178613072,178613276,178613937,178614348,178614753,178614968,178615484,178615788,178616630,178617013,178617234,178617512,178618081,178618491,178618853,178619887,178620112,178620625,178620993,178621368,178621741,178622008,178622767,178624731,178625396,178629443,178630367,178630943,178631300,178632413,178632792,178633044,178633326,178633676,178634083,178634629,178634849,178635304,178635715,178636241,178636799,178637419,178639788,178640110,178640630,178641315,178646104,178651520	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	139437388	139437404	139437403	-	High_confidence	2	3	7	0.191118	2.521641	chr5	139437311	139437364	SINE|MIR|MIR	-	chr5	139420201	139437560	DNAJC18|ENST00000507405.5	-	139420201,139425004,139426171,139428537,139437371	139420225,139425114,139426357,139428683,139437560	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	81170402	81170420	81170419	-	High_confidence	19	19	63	1.720064	4.859449	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	155343321	155343322	155343321	-	RAMPAGE_only	13	13	15	0.409539	3.521641	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	69686969	69686986	69686985	+	RAMPAGE_only	15	15	38	1.037499	5.037401	chr2	69686866	69687221	LINE|CR1|L3	+	chr2	69720790	69825774	ANXA4|ENST00000477632.5	+	69720790,69781519,69788053,69804532,69806384,69807905,69812652,69816100,69818598,69819279,69820698,69825455	69720871,69781574,69788141,69804627,69806498,69810673,69812709,69816194,69818694,69819338,69820821,69825774	0.526316
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40413044	40413075	40413074	-	RAMPAGE_only	7	7	37	1.010196	4.297300	chr2	40412905	40413068	LINE|L1|L1PA4	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.945946
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	1115390	1115400	1115390	-	High_confidence	5	5	14	0.382236	3.238901	chr17	1115307	1115433	LINE|L2|L2b	+	chr17	1072732	1115436	ABR|ENST00000570441.5	-	1072732,1073624,1079329,1083519,1091664,1100636,1115275	1072754,1073677,1079390,1083627,1091850,1100735,1115436	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	102431237	102431260	102431247	-	High_confidence	7	8	24	0.655263	3.653997	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	192694555	192694714	192694665	-	RAMPAGE_only	17	17	139	3.795062	3.473018	chr3	192692727	192695141	LINE|L1|L1MA9	+	chr3	192645861	192723922	MSTRG.15939.9	-	192645861,192669730	192665066,192723922	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	212468008	212468037	212468008	-	RAMPAGE_only	2	2	8	0.218421	3.000000	chr2	212466712	212468298	LTR|ERVL-MaLR|THE1B-int	+	chr2	212192127	212538529	MSTRG.13178.12	-	212192127,212391649,212426361	212391609,212426275,212538529	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	57961626	57961650	57961626	+	High_confidence	6	6	14	0.382236	3.521641	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961437	57973690	AL445250.1|ENST00000641671.1	+	57961437,57962180,57965516,57971594,57972093	57961742,57962248,57965743,57971656,57973690	0.928571
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	36970947	36970950	36970949	-	High_confidence	10	13	19	0.518750	3.947703	chr6	36970926	36971018	LINE|L2|L2b	+	chr6	36968759	36970916	MTCH1|ENST00000471737.1	-	36968759,36970038,36970405,36970646	36968974,36970114,36970473,36970916	0.842105
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	95437804	95437822	95437815	-	RAMPAGE_only	28	29	69	1.883880	5.219528	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.768116
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	4304035	4304636	4304587	+	RAMPAGE_only	14	23	500	13.651303	7.062770	chr12	4304530	4304620	DNA|hAT-Ac|OldhAT1	-	chr12	4273771	4305350	CCND2|ENST00000261254.7	+	4273771,4276004,4278759,4288841,4299859	4274235,4276220,4278919,4288990,4305350	0.994000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	31121334	31121338	31121337	-	RAMPAGE_only	9	11	21	0.573355	3.892407	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	67076973	67076995	67076973	-	RAMPAGE_only	3	3	13	0.354934	3.584963	chr10	67076859	67077820	LINE|L2|L2a	+	chr10	65912517	67665685	CTNNA3|NM_001127384.2	-	65912517,65966611,65988691,66069307,66103156,66280469,66379151,66520616,66621691,66766263,66775443,67180316,67219606,67521841,67539502,67606856,67647414,67665540	65920617,65966746,65988797,66069489,66103249,66280621,66379352,66520773,66621784,66766416,66775524,67180520,67219870,67521961,67539669,67607049,67647518,67665685	0.615385
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	2798772	2798790	2798789	+	High_confidence	2	3	6	0.163816	2.584963	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	59651208	59651210	59651209	+	RAMPAGE_only	6	9	11	0.300329	3.321928	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.818182
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	68679582	68679587	68679582	+	High_confidence	6	6	15	0.409539	3.323231	chr2	68677861	68680074	LINE|L1|L1PA3	-	chr2	68679845	68787922	ARHGAP25|ENST00000481684.5	+	68679845,68710504,68757637,68775220,68782232,68787839	68680095,68710698,68757730,68775420,68782320,68787922	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	108380033	108380044	108380033	-	High_confidence	8	9	15	0.409539	3.521641	chr5	108379933	108380070	SINE|MIR|MIRb	+	chr5	107878236	108380647	MSTRG.17703.4	-	107878236,108020924,108186116,108224120,108348398,108364737,108367830,108378584,108379893,108380408	107881179,108021001,108186247,108224228,108348530,108364995,108367953,108378726,108379910,108380647	0.933333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	116090643	116090653	116090652	+	High_confidence	6	6	14	0.382236	3.521641	chr5	116090420	116090755	DNA|TcMar-Tigger|Tigger15a	+	chr5	116091078	116292916	COMMD10|ENST00000506589.1	+	116091078,116092544,116291516,116292450	116091189,116092700,116291576,116292916	0.785714
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	96618751	96618784	96618751	-	High_confidence	2	2	14	0.382236	3.700440	chr10	96618614	96618797	SINE|MIR|MIR	-	chr10	96595564	96618788	PIK3AP1|ENST00000467625.5	-	96595564,96602279,96603978,96609711,96616638,96618650	96595634,96602398,96604049,96609867,96616711,96618788	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	83472379	83472432	83472431	-	High_confidence	18113	18233	26043	711.041775	6.012089	chr12	83472101	83472741	LTR|ERVL-MaLR|MLT1E2	+	chr12	83454830	83472527	MSTRG.5368.1	-	83454830,83472259	83458952,83472527	0.968053
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	6251214	6251233	6251214	+	RAMPAGE_only	3	3	9	0.245723	2.947703	chr9	6251008	6251757	DNA|hAT-Charlie|Charlie17b	+	chr9	6241694	6257982	IL33|ENST00000456383.3	+	6241694,6250473,6251139,6253551,6254461,6255967	6241785,6250599,6251265,6253602,6254553,6257982	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	16020470	16020479	16020472	-	High_confidence	15	30	48	1.310525	4.658900	chr1	16020340	16020460	SINE|MIR|MIR3	-	chr1	16014027	16019594	HSPB7|ENST00000375718.4	-	16014027,16017073,16017764,16019133	16015759,16017207,16017852,16019594	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40285742	40286250	40286091	-	RAMPAGE_only	19	19	450	12.286173	6.597111	chr2	40286051	40286149	LINE|L2|L2a	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	6739282	6739316	6739315	-	High_confidence	106	108	153	4.177299	5.831651	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6704670	6739030	AL031123.1|ENST00000648205.1	-	6704670,6710871,6711696,6738908	6705078,6711059,6711858,6739030	0.594771
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	231072220	231072248	231072247	+	RAMPAGE_only	2	2	8	0.218421	2.807355	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231066903	231075566	PSMD1|ENST00000444007.1	+	231066903,231070024,231072332,231075510	231067111,231070168,231072415,231075566	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	145681356	145681393	145681365	-	High_confidence	11	11	62	1.692762	5.537295	chr7	145681186	145681435	LINE|L1|L1MB5	-	chr7	145675881	145681369	AC006007.1|ENST00000422084.1	-	145675881,145681108	145676292,145681369	0.516129
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	84074855	84074882	84074866	-	High_confidence	4	4	14	0.382236	3.521641	chr16	84074804	84075345	LTR|ERVL|MER68B	+	chr16	84053765	84075433	MBTPS1|ENST00000570064.5	-	84053765,84056004,84059301,84060681,84063304,84065689,84066488,84067666,84068338,84069865,84070587,84074596	84054645,84056135,84059428,84060813,84063445,84065767,84066613,84067823,84068454,84070038,84070776,84075433	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	46350849	46350851	46350849	+	RAMPAGE_only	8	10	14	0.382236	2.719295	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.928571
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	35212125	35212369	35212195	-	RAMPAGE_only	6	7	165	4.504930	5.368018	chr7	35211733	35213257	LINE|L1|L1ME1	-	chr7	35192266	35254147	MSTRG.19852.4	-	35192266,35208919,35210392,35240878,35244948,35248676,35249950	35208645,35210257,35231580,35241037,35245057,35248841,35254147	0.993939
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	33441441	33441454	33441453	-	RAMPAGE_only	11	11	25	0.682565	3.829275	chr20	33441339	33441479	SINE|MIR|MIR3	-	chr20	33407954	33443508	MSTRG.13616.1	-	33407954,33408700,33410134,33412295,33412574,33417718,33438840,33441117,33442964	33408599,33408888,33410331,33412426,33412782,33417923,33439026,33442930,33443508	0.960000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	9986881	9986905	9986887	+	High_confidence	3	3	11	0.300329	3.321928	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.727273
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	15635964	15636039	15635964	+	RAMPAGE_only	4	5	28	0.764473	4.423252	chr5	15635967	15636085	DNA|hAT-Charlie|Charlie10	+	chr5	15500381	15820400	MSTRG.17106.2	+	15500381,15615982,15733909	15500713,15733294,15820400	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40509827	40509952	40509845	-	RAMPAGE_only	13	13	104	2.839471	5.576709	chr2	40509811	40510125	SINE|Alu|AluSc	-	chr2	40097269	40512435	MSTRG.12053.6	-	40097269,40115371,40139400,40160764,40164853,40170280,40174705,40174824,40175260,40178386,40428472,40453160,40462284,40472685	40111316,40115629,40139676,40160864,40164984,40170349,40174720,40174842,40175281,40178493,40430304,40462149,40472652,40512435	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	20028407	20028472	20028407	+	High_confidence	49	52	190	5.187495	6.675024	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028429	20091158	PLA2G5|ENST00000465698.5	+	20028429,20059631,20068872,20084820,20086082,20088824,20089788,20090567	20028709,20059692,20069032,20084870,20086227,20088943,20089895,20091158	0.631579
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	114182234	114182235	114182234	+	RAMPAGE_only	4	4	6	0.163816	2.584963	chr10	114182000	114182250	LINE|CR1|L3	+	chr10	114179589	114228417	TDRD1|ENST00000369280.1	+	114179589,114187825,114190960,114199172,114201409,114202237,114203071,114203387,114204072,114204721,114206243,114210580,114210859,114211865,114213345,114213976,114217544,114218413,114220567,114221356,114222586,114226048,114227909,114228037	114180043,114188156,114191019,114199317,114201515,114202298,114203176,114203567,114204216,114204893,114206330,114210748,114210967,114212036,114213588,114214114,114217655,114218584,114220843,114221476,114222703,114226216,114227956,114228417	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	34219370	34219371	34219370	+	High_confidence	13	14	19	0.518750	2.794789	chr6	34219234	34219371	SINE|Alu|AluSx	+	chr6	34219438	34220066	CYCSP55|ENST00000399027.3	+	34219438,34220022	34219705,34220066	0.684211
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	46763145	46763298	46763151	-	High_confidence	123	126	853	23.289123	7.672011	chr16	46763076	46763184	SINE|MIR|MIRb	-	chr16	46702281	46763246	MYLK3|NM_001308301.1	-	46702281,46709538,46710636,46712647,46721122,46727235,46729023,46729593,46730592,46732207,46740056,46763039	46707763,46709671,46710789,46712776,46721193,46727377,46729133,46729687,46730698,46732668,46740147,46763246	0.723329
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	183630081	183630136	183630129	+	RAMPAGE_only	6	7	28	0.764473	4.450212	chr3	183630102	183630275	LTR|ERV1?|LTR103b_Mam	+	chr3	183635567	183679478	KLHL24|ENST00000242810.10	+	183635567,183643479,183650295,183663457,183664920,183671033,183672295,183679085	183635793,183643542,183651276,183663642,183665039,183671222,183672484,183679478	0.785714
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	123025529	123025530	123025529	-	High_confidence	10	10	11	0.300329	3.121928	chr8	123025370	123025551	LINE|L2|L2b	+	chr8	123015441	123025650	DERL1|ENST00000519018.5	-	123015441,123019194,123021446,123022683,123023712,123024985,123025571	123015585,123019305,123021499,123022779,123023739,123025050,123025650	0.818182
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	239730464	239730465	239730464	-	High_confidence	5	5	7	0.191118	2.584963	chr1	239730338	239730702	LINE|L2|L2c	-	chr1	239707342	239730465	CHRM3-AS2|ENST00000628573.2	-	239707342,239714176,239720138,239727653,239730400	239707760,239714264,239720178,239727808,239730465	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	50785226	50785278	50785226	+	RAMPAGE_only	2	2	18	0.491447	3.169249	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	128369605	128369606	128369605	+	RAMPAGE_only	9	9	9	0.245723	2.947703	chr3	128369587	128369654	SINE|MIR|MIRb	+	chr3	128153500	128408642	EEFSEC|ENST00000483457.1	+	128153500,128246835,128262127,128341232,128408068	128153823,128247043,128262224,128341889,128408642	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	171251807	171251850	171251807	-	High_confidence	11	12	47	1.283222	4.713641	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171247579	171251794	AL445673.1|ENST00000455124.2	-	171247579,171251522	171247723,171251794	0.702128
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	9648833	9648856	9648855	+	High_confidence	4	4	8	0.218421	2.750000	chr12	9648830	9648973	LTR|ERV1|LTR8	-	chr12	9648166	9694869	MSTRG.4667.15	+	9648166,9653682,9655872,9656920,9687901,9694759	9648933,9653808,9655979,9681033,9688086,9694869	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	201373655	201373749	201373710	-	High_confidence	5	6	45	1.228617	4.825186	chr1	201373644	201373868	SINE|Alu|AluJb	-	chr1	201363328	201373315	TNNT2|ENST00000466570.5	-	201363328,201364297,201365190,201365609,201366837,201367770,201368161,201372026,201373118	201363406,201364375,201365307,201365670,201366871,201367803,201368227,201372155,201373315	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	132319462	132319476	132319468	-	RAMPAGE_only	10	11	36	0.982894	4.879143	chr9	132319064	132319644	LINE|L2|L2a	+	chr9	132261355	132311856	SETX|ENST00000436441.5	-	132261355,132269402,132269614,132271709,132275255,132277059,132278069,132281466,132283263,132286422,132288235,132288549,132295871,132296886,132298079,132300629,132311756	132264985,132269489,132269702,132271808,132275420,132277152,132278257,132281574,132283413,132286494,132288351,132288651,132296028,132297054,132298312,132300803,132311856	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	143043267	143043274	143043267	+	RAMPAGE_only	3	3	9	0.245723	2.750000	chr3	143043314	143043694	LINE|L2|L2b	+	chr3	143001622	143057653	U2SURP|ENST00000463563.6	+	143001622,143010814,143012221,143014310,143016256,143016841,143019968,143020598,143021349,143021472,143022496,143022852,143023974,143024483,143027148,143028339,143028482,143032783,143033270,143034887,143035981,143037178,143038107,143038893,143043116,143050938,143053675,143054942,143056311	143001673,143010859,143012353,143014409,143016371,143016975,143020036,143020693,143021385,143021555,143022662,143023064,143024018,143024548,143027253,143028406,143028646,143032946,143033350,143034975,143036104,143037335,143038203,143038960,143043276,143051049,143053794,143055119,143057653	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	25244078	25244231	25244078	-	High_confidence	12	12	94	2.566445	4.004461	chr1	25244059	25244116	SINE|Alu|Alu	-	chr1	25242248	25244105	RSRP1|ENST00000569495.5	-	25242248,25242538,25243549	25242426,25242705,25244105	0.989362
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	47795013	47795072	47795013	-	High_confidence	16	16	60	1.638156	4.681741	chr14	47794965	47800647	LINE|L1|L1PA2	+	chr14	47764952	47795014	LINC00648|NR_039996.1	-	47764952,47789905,47794971	47767757,47789943,47795014	0.733333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	28681084	28681085	28681084	+	RAMPAGE_only	6	6	6	0.163816	2.584963	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	42415407	42415424	42415423	-	RAMPAGE_only	13	13	28	0.764473	4.236369	chr15	42415122	42415421	SINE|Alu|AluSq2	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	0.964286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	75626304	75626305	75626304	-	High_confidence	14	14	20	0.546052	2.921928	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	57402037	57402038	57402037	+	RAMPAGE_only	9	9	9	0.245723	2.725481	chr15	57402062	57402472	LTR|ERVL-MaLR|MSTB	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	88784861	88784891	88784880	+	RAMPAGE_only	2	2	8	0.218421	2.521641	chr2	88784858	88784980	DNA|hAT-Charlie|MER5A1	-	chr2	88782711	88805403	ANKRD36BP2|ENST00000575193.1	+	88782711,88782852,88784597,88784720,88786469,88786590,88788317,88788441,88792420,88797281,88801053,88802712,88804379,88804786,88805378	88782762,88782925,88784626,88784793,88786498,88786663,88788346,88788514,88792494,88797423,88801309,88802865,88804450,88804880,88805403	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	57549701	57549748	57549720	+	RAMPAGE_only	5	5	19	0.518750	3.503258	chr15	57549593	57549744	LINE|L2|L2a	-	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.947368
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	121950273	121950292	121950291	+	RAMPAGE_only	13	13	32	0.873683	4.348394	chr12	121949929	121950482	LINE|L1|L1MB5	+	chr12	121952694	121959739	WDR66|ENST00000535257.1	+	121952694,121957073,121958271,121958942	121954334,121957268,121958522,121959739	0.843750
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	44845801	44845838	44845833	+	RAMPAGE_only	7	7	26	0.709868	4.101227	chr3	44845603	44846090	LTR|ERV1|MER65D	+	chr3	44843122	44873376	KIF15|ENST00000422209.1	+	44843122,44847984,44848520,44851786,44852207,44852672,44873328	44843234,44848057,44848558,44851952,44852339,44852794,44873376	0.807692
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	201170072	201170244	201170216	+	RAMPAGE_only	6	6	88	2.402629	3.695156	chr2	201168284	201170266	LINE|L1|L1P3	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	0.954545
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	34244698	34244816	34244698	-	High_confidence	17	17	139	3.795062	6.118128	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34153225	34244796	MSTRG.17184.1	-	34153225,34175444,34175821,34179012,34182679,34200820,34218294,34239374,34244615	34169153,34175537,34175957,34179097,34182867,34200921,34218450,34239448,34244796	0.654676
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	63584835	63584924	63584909	-	RAMPAGE_only	4	4	38	1.037499	4.648510	chr12	63584408	63585120	DNA|TcMar-Tigger|MER44C	+	chr12	63560350	63668542	MSTRG.5237.6	-	63560350,63569223,63570757,63580661,63582405,63583811,63594086,63595965,63597808,63600305,63608615,63617303,63618150,63621237,63626468,63644402,63647244,63661343,63665834,63668056	63560662,63569349,63570857,63580836,63582525,63586180,63594133,63596037,63597910,63600386,63608675,63617390,63618228,63621337,63626526,63644496,63647365,63661481,63665859,63668542	0.973684
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	4239742	4239749	4239748	-	High_confidence	8	11	20	0.546052	3.405822	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	173879855	173879864	173879855	+	RAMPAGE_only	2	2	6	0.163816	2.584963	chr3	173879715	173879875	LINE|L1|L1MEf	-	chr3	173816014	173968670	MSTRG.15789.1	+	173816014,173959651	173959590,173968670	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	51651126	51651127	51651126	+	RAMPAGE_only	7	7	7	0.191118	2.521641	chr1	51650929	51651267	LINE|L2|L2c	-	chr1	51617113	51776912	OSBPL9|ENST00000489990.5	+	51617113,51651990,51669433,51714002,51745535,51746709,51748368,51750144,51765821,51772069,51772604,51776832	51617221,51652041,51669512,51714079,51745631,51746757,51748398,51750195,51765981,51772182,51772723,51776912	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	65431741	65431780	65431761	+	RAMPAGE_only	2	2	18	0.491447	3.852169	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.944444
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	153637550	153637551	153637550	+	RAMPAGE_only	7	7	10	0.273026	2.947703	chr1	153637372	153637665	SINE|Alu|AluSg	+	chr1	153634079	153646302	MSTRG.1558.5	+	153634079,153636571,153642245,153643226,153645063	153634343,153638448,153642429,153643364,153646302	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	64265445	64265470	64265445	+	High_confidence	7	7	38	1.037499	4.486348	chr20	64265443	64265603	SINE|MIR|MIR	-	chr20	64265511	64273545	PCMTD2|ENST00000609818.1	+	64265511,64267886,64273220	64265613,64268010,64273545	0.973684
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	25191790	25191795	25191794	-	RAMPAGE_only	12	14	25	0.682565	4.175736	chr20	25191623	25192078	LTR|ERVL|MER70A	-	chr20	25184671	25196892	LOC101926889|NR_109994.1	-	25184671,25186541,25186896,25187852,25190217,25196622	25186160,25186699,25186979,25187947,25190302,25196892	0.760000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	34988764	34988792	34988767	-	High_confidence	4	5	17	0.464144	2.977217	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.823529
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	123402075	123402076	123402075	-	RAMPAGE_only	9	9	9	0.245723	2.947703	chr3	123402013	123402284	LINE|CR1|X7A_LINE	+	chr3	123332594	123404283	ADCY5|ENST00000476455.1	-	123332594,123347781,123352431,123367899,123404203	123332675,123347903,123352581,123368046,123404283	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	122127024	122127025	122127024	+	High_confidence	109	109	123	3.358221	5.741447	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.674797
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	63590999	63591038	63590999	-	RAMPAGE_only	2	2	14	0.382236	3.664498	chr12	63590951	63591233	LINE|CR1|L3	-	chr12	63589504	63620222	MSTRG.5237.12	-	63589504,63594086,63595965,63597808,63600305,63608615,63617303,63618150,63619942	63591936,63594133,63596037,63597910,63600386,63608675,63617390,63618228,63620222	0.928571
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	139364642	139364673	139364647	+	RAMPAGE_only	3	3	14	0.382236	3.546594	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	95117543	95117607	95117606	+	High_confidence	3	3	12	0.327631	3.418296	chr1	95117576	95117935	LINE|L1|L1M4b	+	chr1	95117438	95173878	TMEM56|ENST00000456991.5	+	95117438,95121054,95143890,95148701,95150207,95151324,95173815	95117827,95121184,95144056,95148791,95150266,95151419,95173878	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	149719350	149719351	149719350	+	High_confidence	4	5	7	0.191118	2.521641	chr7	149718995	149719389	LTR|ERVL-MaLR|MLT1C	-	chr7	149719421	149720990	KRBA1|ENST00000497895.5	+	149719421,149720007,149720834	149719672,149720127,149720990	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	151158489	151158518	151158498	-	High_confidence	18	18	75	2.047695	5.467509	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.746667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	63061523	63061549	63061548	+	RAMPAGE_only	3	3	12	0.327631	3.277613	chr15	63061546	63061609	SINE|tRNA-Deu|AmnSINE2	-	chr15	63042683	63071323	TPM1|ENST00000560975.5	+	63042683,63056984,63059562,63060868,63061197,63062575,63071089	63043831,63057118,63059680,63060939,63062277,63062645,63071323	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	97521630	97521778	97521630	-	High_confidence	30	31	265	7.235191	6.938119	chr15	97521399	97521640	SINE|tRNA|LFSINE_Vert	+	chr15	97370370	97521811	LINC02254|ENST00000558621.2	-	97370370,97397656,97427650,97515286,97521580	97371341,97397740,97427952,97515424,97521811	0.735849
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	128896978	128897006	128896996	+	RAMPAGE_only	2	2	9	0.245723	2.750000	chr5	128892904	128897248	LINE|L1|L1MA2	-	chr5	128934293	129042115	MSTRG.17827.3	+	128934293,128964254,128985132,128988599,128990339,129015884,129023619,129027132,129028344,129029576,129033105	128935368,128964317,128985336,128988758,128990464,129016079,129023710,129027331,129028442,129029707,129042115	0.555556
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	571715	571771	571754	-	High_confidence	5	5	25	0.682565	4.003856	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.960000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	113246364	113246370	113246364	+	High_confidence	7	7	21	0.573355	4.106603	chr11	113246334	113246435	SINE|5S-Deu-L2|AmnSINE1	+	chr11	113246107	113260317	NCAM1|ENST00000534516.2	+	113246107,113255876,113260145	113246370,113256001,113260317	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	33554843	33554883	33554875	+	High_confidence	314	318	1898	51.820347	7.247115	chr7	33553757	33554962	LINE|L2|L2a	-	chr7	33554844	33606068	MSTRG.19844.17	+	33554844,33604864,33605194	33554984,33604975,33606068	0.937829
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40401359	40401416	40401360	-	RAMPAGE_only	16	20	49	1.337828	4.537753	chr2	40401194	40401409	LINE|L2|L2c	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	176401785	176401825	176401824	-	RAMPAGE_only	5	5	21	0.573355	3.784184	chr5	176401804	176401878	LINE|L2|L2a	+	chr5	176392641	176416261	CLTB|ENST00000508425.5	-	176392641,176397943,176410256,176416176	176392932,176398047,176410303,176416261	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	37020017	37020018	37020017	-	RAMPAGE_only	10	12	12	0.327631	3.251629	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	37008167	37013995	HEATR5B|ENST00000471051.1	-	37008167,37013840	37008848,37013995	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	47610761	47610802	47610801	-	High_confidence	6	9	30	0.819078	4.548394	chr3	47610404	47610841	LINE|CR1|L3	-	chr3	47590805	47610798	SMARCC1|ENST00000492896.1	-	47590805,47610065,47610524	47590837,47610327,47610798	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	104153049	104153065	104153049	-	RAMPAGE_only	2	2	8	0.218421	2.750000	chr11	104153017	104153226	LINE|L2|L2	+	chr11	104120030	104164107	MSTRG.4259.4	-	104120030,104140089	104139745,104164107	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	12522682	12522683	12522682	+	RAMPAGE_only	5	7	7	0.191118	2.521641	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	74000349	74000381	74000350	+	RAMPAGE_only	5	7	12	0.327631	3.251629	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	19344357	19344412	19344388	-	RAMPAGE_only	4	6	27	0.737170	4.243856	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.925926
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	77663382	77663402	77663382	-	RAMPAGE_only	2	2	10	0.273026	2.947703	chrX	77663038	77663337	SINE|Alu|AluJb	-	chrX	77620427	77682141	MSTRG.22830.13	-	77620427,77633206,77633565,77635914,77652113,77654097,77656559,77663381,77664644,77676225,77681519	77620532,77633384,77634703,77636056,77652353,77654200,77656653,77663558,77664778,77676298,77682141	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	72627739	72627766	72627761	-	RAMPAGE_only	4	4	15	0.409539	3.521641	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	74605007	74605042	74605038	+	RAMPAGE_only	16	16	50	1.365130	4.861468	chr18	74604824	74605092	LTR|ERVL?|LTR87	+	chr18	74597869	74804627	ZNF407|ENST00000582337.5	+	74597869,74630966,74641007,74781427,74803963	74597937,74635706,74641122,74781502,74804627	0.820000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	30690379	30690392	30690391	+	RAMPAGE_only	3	4	7	0.191118	2.807355	chr14	30684809	30690837	LINE|L1|L1HS	-	chr14	30676125	30705885	SCFD1|ENST00000554486.1	+	30676125,30694772,30700187,30702295,30705822	30676633,30694869,30700258,30702375,30705885	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	154975497	154975546	154975497	+	High_confidence	5	5	30	0.819078	4.112821	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	150765412	150765443	150765442	+	RAMPAGE_only	30	31	73	1.993090	5.515489	chr6	150765210	150765508	SINE|Alu|AluSx	+	chr6	150768685	150842056	PLEKHG1|ENST00000475490.1	+	150768685,150786389,150795855,150800718,150804609,150809104,150809380,150809647,150818182,150819678,150821194,150823653,150830581,150841034,150841838	150768738,150786459,150795902,150800869,150804741,150809287,150809476,150809734,150818216,150819774,150821233,150823676,150830727,150841135,150842056	0.561644
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	85682855	85682888	85682862	-	RAMPAGE_only	13	17	32	0.873683	4.760648	chr11	85682520	85682971	DNA|hAT-Tip100|MER115	+	chr11	85657563	85665138	CREBZF|NR_028027.1	-	85657563,85662388,85663523,85663814	85660597,85662457,85663601,85665138	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	41705825	41705828	41705827	-	High_confidence	3	5	7	0.191118	2.584963	chr6	41705810	41705860	DNA|hAT-Tip100|MamTip2	+	chr6	41687909	41705940	TFEB|ENST00000419574.5	-	41687909,41689730,41690662,41691000,41705646	41688028,41689811,41690917,41691235,41705940	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	202581856	202582272	202582045	+	RAMPAGE_only	11	12	312	8.518413	6.459387	chr1	202581884	202582432	LINE|CR1|L3	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	143018389	143018401	143018394	-	High_confidence	4	4	13	0.354934	3.584963	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	142981737	143018390	LY6E-DT|ENST00000517833.1	-	142981737,143018159	142982501,143018390	0.538462
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	8806602	8806622	8806602	-	High_confidence	2	2	9	0.245723	3.000000	chr2	8806591	8806879	SINE|Alu|AluSz6	-	chr2	8800206	8806378	KIDINS220|ENST00000471275.1	-	8800206,8802929,8806270	8800498,8803127,8806378	0.555556
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	111097316	111097344	111097343	-	High_confidence	3	3	18	0.491447	4.087463	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.944444
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	15006394	15006427	15006394	+	RAMPAGE_only	8	10	20	0.546052	3.441446	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.650000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	86735537	86735806	86735622	+	RAMPAGE_only	53	86	1366	37.295360	2.806105	chr10	86735497	86735801	SINE|Alu|AluSq2	+	chr10	86668691	86736068	MSTRG.2936.9	+	86668691,86679366,86680081,86692534,86706530,86716440,86717963,86718726,86726136,86732886	86668784,86679518,86692065,86692571,86716416,86716771,86718144,86718847,86726252,86736068	0.985359
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	43013392	43013393	43013392	-	High_confidence	17	17	17	0.464144	3.852169	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	38650188	38650291	38650221	+	High_confidence	172	179	802	21.896690	6.632383	chr9	38650217	38650807	LINE|L2|L2b	-	chr9	38650256	38662717	AL591543.1|ENST00000642095.1	+	38650256,38658688	38650376,38662717	0.921446
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	173582750	173582783	173582782	+	RAMPAGE_only	2	2	9	0.245723	2.750000	chr4	173582576	173582821	SINE|MIR|MIR	-	chr4	173527269	173583375	HAND2-AS1|ENST00000512099.5	+	173527269,173530966,173536847,173582704	173528501,173531078,173536970,173583375	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	122218272	122218300	122218272	-	High_confidence	2	2	8	0.218421	2.807355	chr12	122218031	122218232	DNA|hAT-Charlie|MER58A	-	chr12	122208315	122218289	DIABLO|ENST00000439489.6	-	122208315,122209696,122216487,122216758,122218265	122208577,122209858,122216584,122216869,122218289	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	112725608	112725678	112725677	+	RAMPAGE_only	3	3	16	0.436842	3.640224	chr13	112725697	112725770	LINE|CR1|L3b	+	chr13	112703286	112810699	ATP11A|ENST00000466946.5	+	112703286,112785134,112804956,112806212,112810618	112703342,112785257,112805046,112806293,112810699	0.687500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	47769731	47769737	47769731	-	RAMPAGE_only	5	6	14	0.382236	3.546594	chr11	47769430	47769893	LTR|ERV1|LTR2	+	chr11	47716509	47767478	FNBP4|NM_001318339.1	-	47716509,47719928,47722975,47724027,47724467,47731373,47732536,47734024,47736615,47743952,47746055,47750915,47751142,47752915,47754527,47765269,47767062	47717512,47720086,47723316,47724172,47724778,47731561,47732670,47734129,47736740,47744163,47746394,47751036,47751290,47753102,47754664,47765362,47767478	0.928571
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	9576274	9576276	9576274	+	RAMPAGE_only	2	4	7	0.191118	2.584963	chr11	9576215	9576303	LINE|CR1|L3	+	chr11	9577784	9586581	WEE1|ENST00000524612.5	+	9577784,9581531,9585257,9585441,9586448	9577895,9581678,9585353,9585527,9586581	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	15629223	15629290	15629223	+	RAMPAGE_only	5	5	41	1.119407	3.391616	chr5	15628995	15629282	SINE|Alu|AluJr	+	chr5	15500381	15820400	MSTRG.17106.2	+	15500381,15615982,15733909	15500713,15733294,15820400	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	2205756	2205851	2205850	+	High_confidence	14	15	176	4.805259	5.133305	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.988636
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	69305029	69305074	69305068	-	RAMPAGE_only	13	13	76	2.074998	4.019184	chr9	69304826	69305243	LTR|ERV1|MER41-int	-	chr9	69296680	69307056	BANCR|NR_047671.2	-	69296680,69304935,69306147,69306853	69296867,69305077,69306290,69307056	0.921053
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	179325263	179325284	179325283	+	High_confidence	2	2	7	0.191118	2.807355	chr3	179325011	179325319	SINE|Alu|AluSp	-	chr3	179325152	179333829	ZNF639|ENST00000466264.5	+	179325152,179327560,179328282,179329617,179332988,179333268	179325322,179327631,179328351,179329728,179333123,179333829	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	28291847	28291848	28291847	+	High_confidence	21	21	22	0.600657	4.011365	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.545455
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	8652268	8652275	8652268	+	High_confidence	5	5	10	0.273026	2.725481	chr6	8652094	8652454	LTR|ERVL-MaLR|MLT1A	+	chr6	8652261	8653814	AL591485.1|ENST00000646741.1	+	8652261,8653544	8653136,8653814	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	20819197	20819217	20819215	-	RAMPAGE_only	4	6	20	0.546052	4.142664	chr10	20819067	20819353	LINE|L1|L1PA13	-	chr10	20809866	20835561	NEBL|ENST00000493005.5	-	20809866,20812768,20813938,20815624,20817599,20818703,20823207,20826446,20828529,20831195,20831472,20835512	20809898,20812940,20814043,20815717,20817692,20819516,20823300,20826539,20828634,20831306,20831583,20835561	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	45292684	45292722	45292685	+	High_confidence	179	241	606	16.545379	6.668606	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.905941
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	46703839	46704065	46703920	-	RAMPAGE_only	18	18	243	6.634533	4.617864	chr16	46703820	46703942	DNA|hAT-Charlie|MER3	+	chr16	46702281	46748309	MYLK3|NM_182493.2	-	46702281,46709538,46710636,46712647,46721122,46727235,46729023,46729593,46730592,46732207,46737710,46740056,46747716	46707763,46709671,46710789,46712776,46721193,46727377,46729133,46729687,46730698,46732668,46738143,46740147,46748309	0.995885
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	203533429	203533449	203533429	-	High_confidence	6	7	14	0.382236	3.546594	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	87530848	87530870	87530848	-	High_confidence	2	2	7	0.191118	2.584963	chr4	87530812	87530989	SINE|MIR|MIR1_Amn	-	chr4	87494439	87531049	SPARCL1|ENST00000512317.5	-	87494439,87494980,87499520,87529044,87530544,87530977	87494598,87495127,87499585,87529101,87530631,87531049	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	94460432	94460465	94460448	+	RAMPAGE_only	5	5	20	0.546052	3.681881	chr4	94460474	94460640	SINE|Alu|FRAM	+	chr4	94451885	94588127	MSTRG.16528.5	+	94451885,94455246,94456243,94467560,94473167,94478944,94482878,94523723,94573350,94575942,94584985,94585564,94586407,94586988	94451995,94455384,94467380,94473071,94478191,94481639,94484054,94523875,94573393,94576034,94585003,94585737,94586444,94588127	0.950000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	54413485	54413493	54413485	-	RAMPAGE_only	4	4	10	0.273026	2.503258	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54226631	54406419	SSBP3|ENST00000371320.7	-	54226631,54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54257126,54258068,54281437,54401860,54404575,54404857,54405952	54227160,54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257186,54258149,54281527,54401945,54404637,54404930,54406419	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	15033650	15033651	15033650	+	RAMPAGE_only	61	61	86	2.348024	5.581139	chr16	15033524	15033760	LINE|L2|L2c	-	chr16	14997747	15038323	PDXDC1|ENST00000450288.3	+	14997747,14998339,15006393,15008778,15009680,15016128,15017119,15017320,15018839,15022703,15026642,15028877,15029950,15031734,15032860,15033277,15034285,15034456,15035448,15036015	14997826,14998405,15006583,15008847,15009759,15016213,15017168,15017422,15018965,15022754,15026706,15028966,15030056,15031906,15032979,15033399,15034378,15034553,15035553,15038323	0.872093
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	12103418	12103425	12103424	+	RAMPAGE_only	6	6	10	0.273026	3.321928	chr6	12103250	12103431	SINE|MIR|MIRb	-	chr6	12012490	12164999	HIVEP1|NM_002114.3	+	12012490,12015525,12089183,12119889,12129758,12130766,12135790,12161438,12163282	12012566,12015668,12089237,12125870,12129892,12130942,12135892,12161929,12164999	0.700000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	158634514	158634515	158634514	+	RAMPAGE_only	8	8	8	0.218421	2.750000	chr3	158634523	158640540	LINE|L1|L1PA2	+	chr3	158644277	158692575	GFM1|ENST00000486715.5	+	158644277,158645628,158646164,158646742,158649040,158652095,158653309,158654546,158658921,158660873,158662627,158665336,158666303,158681994,158684523,158690162,158691138,158691335	158644715,158645781,158646297,158646947,158649157,158652246,158653467,158654631,158659059,158660975,158662684,158665474,158666386,158682157,158684668,158690323,158691192,158692575	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	37426623	37426624	37426623	+	RAMPAGE_only	6	6	8	0.218421	2.807355	chr9	37426667	37426970	SINE|Alu|AluSx3	+	chr9	37427705	37436989	GRHPR|ENST00000497693.1	+	37427705,37436660	37432138,37436989	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	33441308	33441344	33441310	-	RAMPAGE_only	14	35	82	2.238814	4.828247	chr20	33441089	33441319	SINE|MIR|MIR	-	chr20	33407954	33443508	MSTRG.13616.1	-	33407954,33408700,33410134,33412295,33412574,33417718,33438840,33441117,33442964	33408599,33408888,33410331,33412426,33412782,33417923,33439026,33442930,33443508	0.768293
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	103181328	103181329	103181328	-	High_confidence	38	38	38	1.037499	4.701746	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103181763	MSTRG.3133.1	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857,103176485	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982,103181763	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40402117	40402992	40402256	-	RAMPAGE_only	76	77	1274	34.783520	5.807825	chr2	40401969	40402571	LTR|ERV1|MER41B	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	29667400	29667418	29667417	-	RAMPAGE_only	9	11	27	0.737170	4.363713	chr17	29667384	29667678	DNA|hAT-Charlie|MER1B	+	chr17	29625794	29761390	MSTRG.9465.1	-	29625794,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29758368	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677741,29684684,29695523,29703062,29761390	0.962963
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	38948236	38948270	38948236	-	High_confidence	8	8	33	0.900986	4.538910	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38838888	38948237	LINC00639|ENST00000556116.1	-	38838888,38941519,38948177	38839204,38941695,38948237	0.818182
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	10681280	10681307	10681305	+	RAMPAGE_only	2	4	10	0.273026	2.921928	chr19	10681334	10681610	SINE|Alu|AluJb	+	chr19	10670605	10689312	ILF3|ENST00000588657.5	+	10670605,10670973,10671357,10677162,10678612,10679096,10679815,10680345,10681018,10681218,10681992,10682536,10683124,10683365,10683635,10683916,10687345,10688549,10689178	10670608,10671203,10671535,10677310,10678704,10679192,10679927,10680443,10681130,10681329,10682192,10682704,10683262,10683542,10683789,10683970,10687708,10688678,10689312	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	112176365	112176373	112176365	+	High_confidence	109	113	211	5.760850	6.230875	chr11	112176309	112176508	LINE|L2|L2c	-	chr11	112176365	112218929	BCO2|NM_001256397.1	+	112176365,112179277,112193473,112193878,112194652,112199698,112200612,112202022,112213723,112214761,112216219,112217760	112176458,112179482,112193697,112193994,112194755,112199827,112200773,112202190,112213861,112214926,112216330,112218929	0.800948
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	151676392	151676393	151676392	-	RAMPAGE_only	6	6	7	0.191118	2.584963	chr5	151676278	151676631	DNA|hAT-Charlie|MER113	+	chr5	151671569	151685230	SPARC|ENST00000539687.5	-	151671569,151673128,151674611,151676131,151685065	151671694,151673216,151674674,151676201,151685230	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	46243235	46243313	46243235	-	RAMPAGE_only	5	7	39	1.064802	4.663231	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.871795
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	73144752	73144797	73144752	-	RAMPAGE_only	7	7	19	0.518750	3.503258	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.894737
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	185586305	185587374	185586309	-	RAMPAGE_only	147	165	3609	98.535106	7.817149	chr4	185586261	185586440	DNA|DNA|MER135	+	chr4	185585443	185611980	SORBS2|ENST00000650145.1	-	185585443,185589678,185593885,185606584,185611779	185587688,185589785,185593935,185607349,185611980	0.999169
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	67156662	67156763	67156700	-	RAMPAGE_only	3	3	26	0.709868	4.243856	chr10	67155810	67157067	LINE|L1|L1M3	-	chr10	67045672	67180443	MSTRG.2771.6	-	67045672,67128313,67171639	67128238,67171546,67180443	0.961538
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr13	52236217	52236239	52236217	-	High_confidence	2	2	13	0.354934	3.418296	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.538462
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	79446860	79446869	79446868	-	RAMPAGE_only	33	34	49	1.337828	4.554173	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.836735
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	55982777	55982802	55982799	-	High_confidence	6	7	19	0.518750	3.932138	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.894737
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	18794063	18794086	18794085	+	High_confidence	41	41	116	3.167102	5.889541	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.982759
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	98698842	98698889	98698888	+	RAMPAGE_only	3	3	15	0.409539	3.807355	chr1	98698937	98699054	LINE|L2|L2a	+	chr1	98661722	98760500	SNX7|ENST00000306121.7	+	98661722,98684884,98691074,98691534,98695517,98698705,98701816,98738236,98760053	98661911,98685067,98691185,98691699,98695716,98698905,98701903,98738389,98760500	0.866667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	26914550	26914559	26914558	-	RAMPAGE_only	4	4	10	0.273026	3.169925	chr12	26914520	26914587	LINE|RTE-BovB|MamRTE1	+	chr12	26905180	26917734	INTS13|ENST00000538155.5	-	26905180,26906301,26911177,26913456,26913973,26916001,26917351,26917643	26905536,26906437,26911317,26913687,26914128,26916180,26917441,26917734	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	114450506	114450560	114450527	-	RAMPAGE_only	3	3	13	0.354934	3.238901	chr10	114450423	114450741	SINE|Alu|AluSz	-	chr10	114429513	114575537	MSTRG.3200.2	-	114429513,114437843,114439175,114440081,114441016,114441721,114444028,114445311,114447879,114453378,114465697,114468180,114472976,114473878,114487957,114491790,114545004,114547649,114571296,114575415	114436373,114437924,114439250,114440089,114441077,114441786,114444134,114445403,114451671,114453483,114465827,114468216,114473132,114473956,114488016,114491878,114545098,114547776,114571406,114575537	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40361986	40362173	40361986	-	RAMPAGE_only	6	6	80	2.184209	5.235673	chr2	40361887	40362194	SINE|Alu|AluSz	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.987500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	92536601	92536602	92536601	-	High_confidence	34	37	37	1.010196	4.440351	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.837838
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	24987609	24987674	24987609	+	RAMPAGE_only	3	3	31	0.846381	4.309035	chr15	24987476	24987621	DNA|hAT-Charlie|MER5A	-	chr15	24985052	24988232	PWAR5|ENST00000624480.1	+	24985052	24988232	0.870968
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	120467874	120467889	120467874	-	RAMPAGE_only	1	1	7	0.191118	2.584963	chr9	120467655	120467825	SINE|Alu|AluJr	-	chr9	120439789	120458522	CDK5RAP2|ENST00000479584.1	-	120439789,120443619,120447894,120458449	120439972,120443742,120448126,120458522	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	44532569	44532570	44532569	+	High_confidence	5	5	7	0.191118	2.807355	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	68468262	68468263	68468262	+	RAMPAGE_only	5	6	7	0.191118	2.521641	chr9	68468036	68468274	LINE|L1|L1PA14	-	chr9	68464520	68499285	PGM5|ENST00000472639.1	+	68464520,68465092,68479417,68483864,68499226	68464596,68465208,68479553,68484048,68499285	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	15033679	15033729	15033711	+	RAMPAGE_only	14	18	43	1.174012	4.997677	chr16	15033524	15033760	LINE|L2|L2c	-	chr16	14997747	15038323	PDXDC1|ENST00000450288.3	+	14997747,14998339,15006393,15008778,15009680,15016128,15017119,15017320,15018839,15022703,15026642,15028877,15029950,15031734,15032860,15033277,15034285,15034456,15035448,15036015	14997826,14998405,15006583,15008847,15009759,15016213,15017168,15017422,15018965,15022754,15026706,15028966,15030056,15031906,15032979,15033399,15034378,15034553,15035553,15038323	0.906977
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	96387561	96387591	96387590	-	High_confidence	4	4	11	0.300329	3.121928	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	73078287	73078289	73078288	+	RAMPAGE_only	4	7	8	0.218421	2.807355	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.625000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	192704646	192705087	192704860	-	RAMPAGE_only	12	17	205	5.597034	5.629739	chr3	192703992	192705811	DNA|TcMar-Tigger|Tigger1	-	chr3	192645861	192723922	MSTRG.15939.9	-	192645861,192669730	192665066,192723922	0.995122
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	40509494	40509498	40509494	+	RAMPAGE_only	7	7	12	0.327631	3.418296	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	106450815	106450822	106450821	+	High_confidence	573	660	974	26.592738	7.493776	chr9	106450433	106450967	LTR|ERVL-MaLR|MLT1G1	+	chr9	106450815	106604795	LINC01505|ENST00000425709.1	+	106450815,106558471,106588376,106603755	106450888,106558583,106588464,106604795	0.645791
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	70590319	70590335	70590328	+	RAMPAGE_only	6	6	19	0.518750	3.836592	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.842105
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40453515	40453599	40453546	-	High_confidence	22	22	85	2.320722	5.033677	chr2	40453521	40453703	DNA|hAT-Charlie|MER5B	+	chr2	40430019	40453438	SLC8A1|ENST00000455476.5	-	40430019,40453160	40430304,40453438	0.858824
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	12249200	12249215	12249214	+	RAMPAGE_only	4	5	9	0.245723	2.641604	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	27525737	27525764	27525744	+	High_confidence	3	6	22	0.600657	4.095795	chr1	27525728	27525810	LINE|L2|L2b	+	chr1	27525804	27530561	BX293535.1|ENST00000443579.1	+	27525804,27530359	27525885,27530561	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	86453324	86453342	86453341	-	High_confidence	3	4	8	0.218421	2.750000	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453325	MAPK10|ENST00000641313.1	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86354644,86453325	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	69305664	69305669	69305664	-	RAMPAGE_only	3	3	8	0.218421	2.521641	chr9	69305474	69306161	LTR|ERV1|MER41-int	-	chr9	69296680	69307056	BANCR|NR_047671.2	-	69296680,69304935,69306147,69306853	69296867,69305077,69306290,69307056	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	53464774	53464834	53464788	+	RAMPAGE_only	3	3	24	0.655263	4.334963	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.958333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	129493040	129493058	129493040	-	RAMPAGE_only	2	2	7	0.191118	2.584963	chrX	129492703	129493323	LINE|L1|L1ME4a	+	chrX	129446845	129523405	SMARCA1|ENST00000371121.4	-	129446845,129448332,129465519,129465843,129468772,129471203,129480700,129481074,129487017,129488936,129490059,129491940,129493039,129496749,129497844,129499731,129504733,129506079,129507940,129511803,129515686,129515893,129516330,129518360,129523196	129447233,129448443,129465732,129465962,129468905,129471326,129480814,129481185,129487137,129489085,129490192,129492093,129493075,129496871,129498071,129499841,129504802,129506211,129508096,129511983,129515787,129515994,129516497,129518447,129523405	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	94287334	94287356	94287334	+	RAMPAGE_only	3	3	12	0.327631	3.022055	chr1	94287201	94287494	LTR|ERVL-MaLR|THE1D	+	chr1	94247865	94334848	AC097059.1|ENST00000413103.2	+	94247865,94249412,94250378,94333308,94334511	94248039,94249519,94250544,94333409,94334848	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	102235451	102235481	102235458	-	High_confidence	34	35	102	2.784866	5.632100	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.852941
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	48430179	48430190	48430189	-	High_confidence	3	3	6	0.163816	2.584963	chr3	48430133	48430258	SINE|MIR|MIRb	+	chr3	48403853	48430051	PLXNB1|ENST00000296440.10	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48430007	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48430051	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	70277782	70277783	70277782	+	RAMPAGE_only	8	8	11	0.300329	2.845351	chr2	70277757	70277850	DNA|hAT-Charlie|MER5A	-	chr2	70258148	70279103	PCYOX1|ENST00000264441.9	+	70258148,70259359,70261211,70274958,70275513,70277019	70258276,70259566,70261386,70275170,70275666,70279103	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	55124079	55124101	55124100	+	RAMPAGE_only	9	10	17	0.464144	3.616875	chr14	55123866	55124149	LTR|ERVL-MaLR|MLT1O	-	chr14	55129043	55145403	LGALS3|ENST00000254301.13	+	55129043,55137369,55138044,55140274,55142583,55145115	55129300,55137391,55138368,55140363,55142749,55145403	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	761039	761052	761039	+	High_confidence	2	2	9	0.245723	2.500000	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	105416600	105416933	105416704	-	RAMPAGE_only	32	34	781	21.323335	4.150865	chr2	105416054	105417101	DNA|hAT-Charlie|Charlie1a	-	chr2	105374634	105438503	MSTRG.12494.11	-	105374634,105399502,105402209	105386540,105402095,105438503	0.997439
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	39064912	39064933	39064912	-	RAMPAGE_only	2	2	6	0.163816	2.584963	chr14	39064766	39064897	SINE|Alu|FLAM_C	-	chr14	39031918	39088723	SEC23A|ENST00000537403.5	-	39031918,39039030,39040731,39042785,39045162,39048651,39055142,39061764,39063323,39064912,39067172,39074414,39075934,39085761,39086928,39087523	39033328,39039096,39040887,39042872,39045324,39048729,39055296,39061871,39063413,39064993,39067296,39074530,39076093,39085906,39087008,39088723	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	92329112	92329208	92329187	+	High_confidence	96	97	286	7.808545	7.297578	chr5	92329090	92329219	LINE|L2|L2a	-	chr5	92329229	92343153	MSTRG.17619.1	+	92329229	92343153	0.804196
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	27579290	27579306	27579305	+	RAMPAGE_only	5	5	16	0.436842	3.750000	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.687500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	6739175	6739203	6739202	-	High_confidence	4	4	8	0.218421	2.500000	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6704670	6739030	AL031123.1|ENST00000648205.1	-	6704670,6710871,6711696,6738908	6705078,6711059,6711858,6739030	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	67884427	67884448	67884437	+	RAMPAGE_only	61	61	195	5.324008	5.543049	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.769231
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	18082735	18082750	18082735	-	RAMPAGE_only	2	3	7	0.191118	2.584963	chr8	18082289	18082821	LTR|ERV1|MER90a	+	chr8	18056461	18084091	ASAH1|ENST00000637609.1	-	18056461,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18069791,18071299,18075540,18083980	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18067298,18069878,18071390,18075587,18084091	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	79631273	79631329	79631302	+	High_confidence	122	122	422	11.521700	6.474634	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.964455
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	123470168	123470278	123470230	+	RAMPAGE_only	4	8	57	1.556249	5.289149	chr6	123470218	123470313	LINE|L2|L2c	-	chr6	123439603	123471756	HRAT13|NR_110844.1	+	123439603,123468815,123469636	123439777,123468930,123471756	0.964912
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	178869309	178869326	178869309	-	High_confidence	2	3	8	0.218421	3.000000	chr1	178869306	178869394	LINE|CR1|L3b	+	chr1	178865433	178869278	ANGPTL1|ENST00000444255.1	-	178865433,178869113	178865802,178869278	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	85330277	85330287	85330277	-	RAMPAGE_only	3	3	8	0.218421	2.807355	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.625000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	94234099	94234110	94234109	+	RAMPAGE_only	2	2	6	0.163816	2.584963	chr4	94234038	94234182	SINE|MIR|MIR3	-	chr4	94208083	94289899	SMARCAD1|ENST00000394961.6	+	94208083,94208345,94213034,94226118,94233953,94236951,94240905,94249653,94250751,94252615,94264706,94270727,94273616,94274737,94274889,94276338,94277021,94278421,94278615,94278922,94280591,94281471,94283120,94284959,94289472	94208242,94208584,94213152,94226296,94234122,94237018,94241006,94249755,94250833,94253007,94264906,94270818,94273716,94274797,94274965,94276474,94277159,94278517,94278733,94279050,94280780,94281590,94283303,94285069,94289899	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	86453149	86453203	86453184	-	High_confidence	21	34	205	5.597034	6.094452	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016014	86453185	MAPK10|ENST00000641634.1	-	86016014,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194318,86354529,86429677,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86429805,86453185	0.717073
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	143350380	143350449	143350400	+	RAMPAGE_only	104	133	409	11.166766	6.146353	chr4	143350396	143350702	SINE|Alu|AluSp	+	chr4	143337177	143438041	GAB1|ENST00000514639.5	+	143337177,143415476,143433490,143434087,143437998	143337260,143415771,143433716,143434168,143438041	0.867971
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	184974892	184974911	184974910	-	High_confidence	7	7	16	0.436842	3.773557	chr1	184974824	184974995	DNA|hAT-Charlie|MER5A	+	chr1	184791024	184974586	FAM129A|NM_052966.3	-	184791024,184798078,184803584,184805945,184808073,184818637,184823166,184823637,184831846,184884632,184890107,184894074,184899178,184974301	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184823742,184831962,184884800,184890222,184894206,184899309,184974586	0.812500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	78620056	78620058	78620057	+	High_confidence	11	21	21	0.573355	4.297079	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.761905
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	212475250	212475274	212475250	-	RAMPAGE_only	5	5	12	0.327631	3.027169	chr2	212475180	212475355	DNA|hAT-Tip100|MER45A	+	chr2	212192127	212538529	MSTRG.13178.12	-	212192127,212391649,212426361	212391609,212426275,212538529	0.916667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	181954475	181954492	181954484	+	High_confidence	4	4	14	0.382236	3.664498	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	147937470	147937546	147937528	+	RAMPAGE_only	4	6	35	0.955591	4.457575	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.657143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40343039	40343063	40343062	-	RAMPAGE_only	4	4	18	0.491447	3.852169	chr2	40342962	40343097	SINE|MIR|MIR3	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.944444
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	48693209	48693210	48693209	+	High_confidence	5	5	7	0.191118	2.521641	chr22	48693219	48693333	LINE|L1|L1ME4c	+	chr22	48693246	48750408	FAM19A5|ENST00000406880.1	+	48693246,48707716,48749838	48693381,48707844,48750408	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40446724	40446794	40446781	-	RAMPAGE_only	6	6	28	0.764473	3.521641	chr2	40446662	40446872	SINE|MIR|MIRb	+	chr2	40115252	40452008	MSTRG.12053.14	-	40115252,40139400,40160764,40164853,40170280,40174705,40174824,40175260,40178386,40428472,40445273	40115629,40139676,40160864,40164984,40170349,40174720,40174842,40175281,40178493,40430304,40452008	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	156547617	156547623	156547617	-	RAMPAGE_only	10	11	32	0.873683	3.622448	chr3	156547519	156547912	LINE|RTE-X|L4_C_Mam	+	chr3	156543061	156548997	SSR3|ENST00000464138.1	-	156543061,156544307,156548804	156543269,156544439,156548997	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	123413318	123413353	123413351	-	RAMPAGE_only	5	11	28	0.764473	4.384517	chr8	123412758	123413395	LTR|ERV1|MER67B	+	chr8	123320501	123416350	ATAD2|ENST00000521903.5	-	123320501,123322937,123325892,123328189,123333877,123334199,123336372,123337624,123339310,123344883,123346085,123346617,123347091,123348186,123349284,123356388,123357561,123359220,123359576,123361538,123369057,123369820,123370902,123371235,123371669,123372636,123380528,123400742,123416247	123321175,123323066,123326026,123328579,123334021,123334322,123336532,123337821,123339446,123345069,123346272,123346750,123347406,123348273,123349421,123356477,123357736,123359336,123359685,123361646,123369175,123370024,123370990,123371338,123371835,123372686,123380677,123401175,123416350	0.714286
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	29667606	29667658	29667657	-	RAMPAGE_only	5	5	17	0.464144	3.875000	chr17	29667384	29667678	DNA|hAT-Charlie|MER1B	+	chr17	29625794	29761390	MSTRG.9465.1	-	29625794,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29758368	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677741,29684684,29695523,29703062,29761390	0.705882
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	30875997	30876017	30876016	+	High_confidence	3	3	8	0.218421	3.000000	chr16	30875869	30876035	SINE|MIR|MIRc	-	chr16	30875911	30895220	MIR762HG|ENST00000565573.1	+	30875911,30888713,30894547	30876118,30888958,30895220	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	39800271	39800305	39800297	-	High_confidence	24	25	118	3.221708	6.125617	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.618644
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	2757801	2757915	2757801	+	High_confidence	6	7	58	1.583551	4.996925	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.931034
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	16712879	16712933	16712889	-	High_confidence	23	23	124	3.385523	6.120454	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.927419
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	50016122	50016129	50016128	-	RAMPAGE_only	4	4	9	0.245723	3.000000	chr19	50016092	50016166	DNA|hAT-Ac|OldhAT1	-	chr19	49994862	50020647	VRK3|ENST00000599342.5	-	49994862,50000789,50007568,50009235,50015731,50016023,50020584	49994919,50000854,50007826,50009385,50015793,50016163,50020647	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	15798662	15798665	15798664	-	RAMPAGE_only	6	7	10	0.273026	2.947703	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	157288627	157288628	157288627	+	RAMPAGE_only	15	15	20	0.546052	3.921928	chr5	157288569	157288795	SINE|MIR|MIRb	-	chr5	157277058	157304300	CYFIP2|ENST00000621516.1	+	157277058,157285338,157287018,157288611,157294782,157296672,157300714,157302793,157304237	157277173,157285478,157287108,157288659,157294860,157296774,157300896,157302890,157304300	0.700000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	20676201	20676208	20676201	-	High_confidence	5	5	11	0.300329	3.277613	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr21	29077476	29077501	29077486	+	High_confidence	11	11	26	0.709868	4.084963	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.576923
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	31128483	31128484	31128483	+	RAMPAGE_only	12	12	15	0.409539	3.467720	chr17	31128254	31128640	LINE|L1|L1PA13	-	chr17	31156040	31254292	NF1|ENST00000495910.6	+	31156040,31159009,31163185,31181421,31181709,31182507,31200421,31201036,31201410,31206239,31214450,31219004,31221849,31223443,31225094,31226434,31227217,31227522,31229024,31229834,31230259,31230841,31232072,31232699,31233001,31235610,31235917,31248983,31249954	31156126,31159093,31163376,31181489,31181785,31182665,31200595,31201159,31201485,31206371,31214585,31219118,31221929,31223567,31225250,31226684,31227291,31227606,31229465,31229974,31230382,31230925,31232189,31232881,31233213,31235772,31236021,31249119,31254292	0.733333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	8681676	8681677	8681676	+	High_confidence	6	6	8	0.218421	2.750000	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	118835953	118835954	118835953	-	High_confidence	7	7	8	0.218421	2.807355	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	91197420	91197448	91197423	+	RAMPAGE_only	7	8	32	0.873683	4.601410	chr8	91191844	91197868	LINE|L1|L1PA3	-	chr8	91209493	91395649	SLC26A7|ENST00000522181.5	+	91209493,91218889,91249618,91289135,91295530,91318215,91334294,91340403,91343352,91351809,91352900,91362352,91363471,91366579,91369784,91389337,91393796,91393935,91395061	91209542,91219005,91249844,91289246,91295703,91318380,91334447,91340551,91343466,91351887,91352996,91362459,91363538,91366717,91369833,91389438,91393851,91394039,91395649	0.656250
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	117998926	117998930	117998926	+	High_confidence	413	453	659	17.992418	5.496710	chr6	117996379	117998927	LINE|L1|L1P1	+	chr6	117998974	117999448	AL450405.1|ENST00000443998.1	+	117998974	117999448	0.889226
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	195688724	195688753	195688750	+	High_confidence	4	4	10	0.273026	2.947703	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688755	195708806	MUC20-OT1|ENST00000628547.2	+	195688755,195689338,195696360,195699029,195708133,195708746	195688797,195689438,195696589,195699178,195708435,195708806	0.600000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	4782419	4782431	4782419	+	High_confidence	5	5	12	0.327631	3.277613	chr3	4782402	4782508	DNA|hAT-Charlie|MER117	+	chr3	4782339	4788458	ITPR1|ENST00000481415.2	+	4782339,4783815,4787946	4782741,4783920,4788458	0.916667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	50763466	50763509	50763508	+	High_confidence	3	3	21	0.573355	3.975418	chr12	50763350	50763657	SINE|Alu|AluJo	+	chr12	50763709	50814192	ATF1|ENST00000552510.5	+	50763709,50780139,50795908,50809455,50814009	50763741,50780238,50796009,50809589,50814192	0.952381
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	50659295	50659333	50659295	+	RAMPAGE_only	3	3	17	0.464144	3.625000	chr18	50659243	50659313	DNA|hAT-Tip100|MER91B	-	chr18	50560641	50706139	MAPK4|ENST00000588540.1	+	50560641,50663088,50704529	50560759,50664504,50706139	0.823529
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	37855594	37855613	37855612	+	RAMPAGE_only	2	2	7	0.191118	2.584963	chr22	37855622	37855711	SINE|tRNA|LFSINE_Vert	+	chr22	37858564	37871290	EIF3L|ENST00000464790.1	+	37858564,37862968,37863271,37870175,37871199	37858740,37863038,37863345,37870347,37871290	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	35187144	35187196	35187195	+	RAMPAGE_only	3	4	23	0.627960	2.843302	chr17	35187192	35187720	LTR|ERVL-MaLR|MLT1K	-	chr17	35148263	35189345	UNC45B|NM_001308281.1	+	35148263,35148972,35150047,35152892,35154573,35155295,35159374,35163994,35168060,35171321,35174241,35175967,35177016,35177494,35180558,35183426,35186298	35148431,35149009,35150223,35152982,35154741,35155464,35159545,35164166,35168361,35171462,35174369,35176034,35177130,35177610,35180676,35183582,35189345	0.913043
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	75347065	75347074	75347065	+	High_confidence	3	3	8	0.218421	2.521641	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347068	75349024	NEIL1|ENST00000568881.1	+	75347068,75347958,75348883	75347473,75347999,75349024	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	36163291	36163293	36163292	+	High_confidence	3	6	8	0.218421	2.750000	chr11	36163207	36163438	DNA|TcMar-Tigger|MamRep434	-	chr11	36163298	36227429	LDLRAD3|ENST00000529759.1	+	36163298,36227084	36163590,36227429	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	15717117	15717118	15717117	+	RAMPAGE_only	8	8	11	0.300329	3.321928	chr5	15716998	15717138	LINE|CR1|L3b	-	chr5	15500381	15820400	MSTRG.17106.2	+	15500381,15615982,15733909	15500713,15733294,15820400	0.909091
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	44439852	44439854	44439853	-	High_confidence	3	6	8	0.218421	3.000000	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421126	44439917	C3orf86|ENST00000636468.1	-	44421126,44439796	44421813,44439917	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	6738950	6738967	6738955	-	High_confidence	3	3	15	0.409539	3.906891	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6704670	6739030	AL031123.1|ENST00000648205.1	-	6704670,6710871,6711696,6738908	6705078,6711059,6711858,6739030	0.533333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	148900876	148900917	148900916	+	RAMPAGE_only	22	25	54	1.474341	4.798030	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148889783	148932725	PDE4DIP|ENST00000612094.1	+	148889783,148929196,148932112	148889894,148931923,148932725	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	143039246	143039267	143039266	+	High_confidence	12	12	36	0.982894	4.157854	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	100268208	100268281	100268280	+	RAMPAGE_only	16	16	73	1.993090	4.345986	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.972603
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	172601529	172601548	172601547	+	RAMPAGE_only	2	2	7	0.191118	2.584963	chr2	172601350	172601689	LTR|ERVL-MaLR|THE1D	+	chr2	172555968	172608669	PDK1|ENST00000282077.7	+	172555968,172558707,172562219,172564502,172564977,172566855,172568740,172570725,172586277,172592934,172595828	172556346,172558849,172562291,172564687,172565073,172566933,172568817,172570824,172586388,172593048,172608669	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	56645732	56645744	56645743	+	High_confidence	3	3	10	0.273026	2.725481	chr1	56645691	56645853	SINE|MIR|MIR3	+	chr1	56645387	56715334	PRKAA2|ENST00000610361.1	+	56645387,56671440,56674380,56691393,56692357,56693764,56695934,56703970,56706091,56707474	56645474,56671447,56674522,56691487,56692502,56693852,56696159,56704475,56706218,56715334	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	76050925	76050926	76050925	-	RAMPAGE_only	10	11	14	0.382236	3.664498	chr12	76050731	76051020	SINE|Alu|AluJo	+	chr12	76049433	76053158	NAP1L1|ENST00000547969.5	-	76049433,76050530,76053090	76049785,76050653,76053158	0.785714
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	99431508	99431512	99431508	-	High_confidence	21	21	41	1.119407	4.753774	chr10	99431456	99431604	LINE|L2|L2c	+	chr10	99396869	99431569	GOT1|ENST00000370508.6	-	99396869,99402579,99403468,99403723,99405755,99406136,99406725,99420623,99430447	99397686,99402722,99403634,99403874,99405860,99406249,99406849,99420805,99431569	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	93017658	93017716	93017667	-	High_confidence	267	267	1552	42.373645	7.888176	chr8	93017253	93017736	LTR|ERVL|LTR79	-	chr8	92885319	93017673	TRIQK|ENST00000520686.5	-	92885319,92891988,92916928,92954405,93017608	92886735,92892074,92917010,92954564,93017673	0.671392
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	15635416	15635435	15635416	+	RAMPAGE_only	3	3	11	0.300329	3.277613	chr5	15635068	15635559	LTR|ERVL-MaLR|MLT1H1	-	chr5	15500381	15820400	MSTRG.17106.2	+	15500381,15615982,15733909	15500713,15733294,15820400	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	121281793	121281851	121281793	+	RAMPAGE_only	6	6	32	0.873683	4.601410	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.718750
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40417465	40417733	40417555	-	RAMPAGE_only	13	15	308	8.409203	5.133421	chr2	40417499	40417662	SINE|Alu|AluJb	-	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	24467222	24467238	24467237	+	RAMPAGE_only	7	8	25	0.682565	3.882045	chr22	24467213	24467377	SINE|MIR|MIR3	+	chr22	24494106	24526668	UPB1|ENST00000415388.5	+	24494106,24502125,24510748,24513323,24515200,24520386,24521985,24523618,24525710	24495507,24502213,24510843,24513485,24515370,24520468,24522028,24523773,24526668	0.520000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	8600733	8600739	8600738	+	High_confidence	3	3	8	0.218421	2.807355	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600725	8788523	PLCB1|ENST00000626966.2	+	8600725,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8600781,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788523	0.625000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	110642789	110642790	110642789	-	High_confidence	39	40	40	1.092104	4.166133	chr2	110642693	110642986	SINE|Alu|AluJr	-	chr2	110641325	110642790	BUB1|ENST00000478175.1	-	110641325,110641641,110642118,110642448	110641464,110641803,110642234,110642790	0.975000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	139364701	139364731	139364711	+	RAMPAGE_only	2	3	12	0.327631	3.095795	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	149887611	149887618	149887616	-	RAMPAGE_only	19	26	43	1.174012	4.574114	chr5	149887556	149888026	LTR|ERV1|LTR46	+	chr5	149857954	149944793	PDE6A|ENST00000617647.4	-	149857954,149859891,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647,149907311,149914942,149921634,149931027,149944199	149858530,149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149903695,149907378,149915007,149921709,149931168,149944793	0.813953
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	55688335	55688337	55688336	+	RAMPAGE_only	10	15	16	0.436842	3.589898	chr17	55688144	55688497	LTR|ERVL-MaLR|THE1B	+	chr17	55750978	55777374	PCTP|ENST00000268896.9	+	55750978,55767334,55771105,55773723,55774791,55776034	55751244,55767452,55771185,55773895,55774859,55777374	0.687500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	100715407	100715420	100715407	+	RAMPAGE_only	3	3	10	0.273026	2.725481	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr15	76576955	76577011	76577007	-	High_confidence	8	8	31	0.846381	4.573557	chr15	76576480	76577164	LINE|L1|L1MA3	+	chr15	76471261	76576985	SCAPER|ENST00000569784.1	-	76471261,76504858,76567269,76574157,76576858	76471335,76504974,76567405,76574284,76576985	0.677419
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	8842279	8842301	8842279	+	High_confidence	3	3	6	0.163816	2.584963	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	18076324	18076336	18076324	-	RAMPAGE_only	1	1	7	0.191118	2.584963	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18056461	18084091	ASAH1|ENST00000637609.1	-	18056461,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18069791,18071299,18075540,18083980	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18067298,18069878,18071390,18075587,18084091	0.571429
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	130878567	130878599	130878598	-	High_confidence	2	2	6	0.163816	2.584963	chr6	130878527	130878760	DNA|TcMar-Tigger|Tigger19a	-	chr6	130870076	130878625	EPB41L2|ENST00000534166.1	-	130870076,130878103	130870126,130878625	0.833333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	75640219	75640257	75640251	+	RAMPAGE_only	2	2	9	0.245723	2.500000	chr6	75640080	75640313	DNA|TcMar-Tigger|Tigger7	+	chr6	75602223	75663505	MSTRG.18992.6	+	75602223,75621531,75623899,75633580,75634706,75637712,75659261,75663220	75602576,75621625,75623960,75633726,75637633,75647801,75659407,75663505	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	36712776	36712799	36712777	+	RAMPAGE_only	3	5	15	0.409539	3.039149	chr18	36711764	36713517	LINE|L1|L1MDa	+	chr18	36297835	36779530	MSTRG.10549.4	+	36297835,36355538,36372679,36501931,36512437,36576450,36594786,36602673,36611951,36625510,36649315,36652569,36681435,36687127,36693208,36709094,36717708,36730645,36740655,36742736,36744031,36746944,36755118,36759117,36760607,36769264,36779447	36298000,36355645,36372744,36501999,36512543,36576545,36594898,36602768,36612095,36625749,36649405,36658188,36681570,36687178,36693423,36717386,36718715,36730804,36740838,36742856,36744193,36747135,36755311,36759141,36760782,36769426,36779530	0.933333
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	111940109	111940121	111940120	-	RAMPAGE_only	3	3	8	0.218421	2.521641	chr7	111940063	111940135	LINE|RTE-BovB|MamRTE1	-	chr7	111728273	112004131	DOCK4|ENST00000445943.5	-	111728273,111732225,111735053,111736916,111739133,111739395,111741093,111741539,111742012,111746333,111747266,111755514,111758623,111760180,111765117,111767031,111769528,111778275,111782863,111783856,111784096,111788661,111790456,111808820,111809300,111811873,111822361,111834587,111840762,111844762,111846998,111863371,111867983,111869573,111871989,111872268,111872466,111877029,111895611,111900373,111901676,111915778,111935539,111940109,111944810,111945716,111977131,111984305,111989014,111994134,111998447,112000493,112004047	111728720,111732287,111735167,111736989,111739243,111739477,111741214,111741661,111742132,111746417,111747443,111755601,111758790,111760322,111765222,111767118,111769677,111778369,111782924,111783952,111784123,111788747,111790605,111808879,111809401,111811949,111822456,111834686,111840870,111844897,111847126,111863564,111868154,111869655,111872090,111872352,111872564,111877186,111895718,111900536,111901801,111915904,111935628,111940242,111944871,111945798,111977283,111984390,111989163,111994231,111998503,112000534,112004131	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	149197230	149197505	149197482	-	RAMPAGE_only	13	14	209	5.706245	6.388902	chr1	149197153	149197558	LTR|ERVL-MaLR|MLT1A0	-	chr1	149179148	149263607	MSTRG.1408.4	-	149179148,149195624,149198360,149201013,149240376	149195022,149198171,149198484,149201090,149263607	0.980861
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	110170593	110170716	110170695	+	RAMPAGE_only	13	14	121	3.303615	5.982630	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	138101998	138102034	138102033	-	High_confidence	3	3	7	0.191118	2.584963	chr6	138101854	138102001	DNA|hAT-Charlie|MER5A1	-	chr6	138090780	138102126	MSTRG.19338.2	-	138090780,138096353,138101883	138092268,138096494,138102126	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40328544	40329046	40328862	-	RAMPAGE_only	12	12	422	11.521700	6.937651	chr2	40328224	40329060	LINE|L2|L2b	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr22	50757120	50757147	50757133	+	High_confidence	7	7	44	1.201315	4.817053	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	94463161	94463318	94463254	+	RAMPAGE_only	12	14	151	4.122694	4.503006	chr4	94463233	94463679	DNA|TcMar-Tigger|Tigger2	-	chr4	94451885	94588127	MSTRG.16528.5	+	94451885,94455246,94456243,94467560,94473167,94478944,94482878,94523723,94573350,94575942,94584985,94585564,94586407,94586988	94451995,94455384,94467380,94473071,94478191,94481639,94484054,94523875,94573393,94576034,94585003,94585737,94586444,94588127	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	68949387	68949427	68949423	-	RAMPAGE_only	6	6	14	0.382236	3.180833	chr17	68949177	68950445	LINE|L1|L1P1	+	chr17	68937070	68944874	ABCA8|ENST00000585531.1	-	68937070,68940757,68941938,68944716	68937115,68940962,68942039,68944874	0.785714
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	131804603	131804700	131804603	-	High_confidence	84	86	279	7.617427	6.532844	chr3	131804531	131804997	LTR|ERVL-MaLR|MLT1H	+	chr3	131534736	131804701	MSTRG.15468.5	-	131534736,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131804557	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131804701	0.541219
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	3533917	3533935	3533934	-	High_confidence	40	40	74	2.020393	4.903835	chr2	3533849	3534784	LTR|ERV1|LTR27E	+	chr2	3531983	3533782	AC108488.1|ENST00000439547.5	-	3531983,3533107,3533710	3532310,3533190,3533782	0.959459
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	15781479	15781528	15781479	+	RAMPAGE_only	2	2	18	0.491447	3.530493	chr5	15781105	15781636	LINE|L1|HAL1	+	chr5	15500381	15820400	MSTRG.17106.2	+	15500381,15615982,15733909	15500713,15733294,15820400	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr17	50165931	50165941	50165931	+	High_confidence	9	10	23	0.627960	3.827910	chr17	50165337	50165958	LINE|L2|L2b	-	chr17	50165984	50175932	SGCA|NM_000023.3	+	50165984,50167367,50167581,50167946,50168373,50169091,50170142,50170639,50175256,50175711	50166077,50167487,50167736,50168019,50168572,50169254,50170351,50170666,50175449,50175932	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	46087118	46087222	46087118	-	High_confidence	11	11	94	2.566445	5.818518	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.829787
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	84074948	84075008	84074948	-	High_confidence	12	12	61	1.665459	4.164937	chr16	84074804	84075345	LTR|ERVL|MER68B	+	chr16	84053765	84075433	MBTPS1|ENST00000570064.5	-	84053765,84056004,84059301,84060681,84063304,84065689,84066488,84067666,84068338,84069865,84070587,84074596	84054645,84056135,84059428,84060813,84063445,84065767,84066613,84067823,84068454,84070038,84070776,84075433	0.672131
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	81181330	81181362	81181349	-	High_confidence	8	8	51	1.392433	5.228758	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81100878	81181362	PKD1L2|NM_001278425.1	-	81100878,81108561,81109193,81112162,81117370,81121585,81123650,81127760,81127880,81130458,81133562,81137436,81139507,81141296,81147297,81148139,81149689,81151766,81153960,81154236,81156858,81159623,81160682,81163599,81164643,81165838,81167918,81170942,81174719,81175604,81177806,81179644,81181150	81101284,81108693,81109295,81112373,81117531,81121713,81123784,81127878,81128066,81130644,81133700,81137533,81139712,81141525,81147514,81148357,81149889,81151913,81154139,81154338,81157089,81159817,81160905,81163731,81164770,81165963,81168101,81171074,81174914,81175750,81177983,81179786,81181362	0.823529
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	25437241	25437251	25437250	+	RAMPAGE_only	3	3	7	0.191118	2.807355	chr20	25436252	25437621	LINE|L1|L1MB3	-	chr20	25407726	25448555	GINS1|ENST00000262460.4	+	25407726,25413789,25417103,25418104,25425210,25441701,25445922	25407895,25413854,25417202,25418195,25425327,25441776,25448555	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	73623503	73623519	73623518	+	High_confidence	4	4	9	0.245723	3.000000	chr3	73623488	73623574	SINE|MIR|MIRc	-	chr3	73623567	73627899	PDZRN3-AS1|NR_046681.1	+	73623567,73625411	73623965,73627899	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	124341180	124341306	124341269	-	RAMPAGE_only	7	8	52	1.419736	3.851343	chr8	124340847	124343117	LTR|ERV1|MER57A-int	+	chr8	124306188	124372692	MSTRG.21505.3	-	124306188,124320085,124322104,124323320,124330747,124367304,124372279	124314061,124320191,124322147,124327421,124367255,124372081,124372692	0.961538
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	129488730	129488857	129488856	+	High_confidence	11	12	68	1.856577	4.713415	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.941176
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr14	68882879	68882972	68882879	-	High_confidence	9	12	50	1.365130	4.769975	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.940000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr7	37353636	37353643	37353636	-	High_confidence	18	18	30	0.819078	4.348394	chr7	37353223	37353900	LTR|ERV1|LTR12_	-	chr7	36852905	37353668	ELMO1|NM_001206482.1	-	36852905,36861658,36870392,36878009,36887559,36894853,37013298,37096618,37133129,37211385,37213334,37216644,37222614,37224878,37233094,37244355,37259180,37271831,37314849,37315919,37342612,37353031	36855751,36861736,36870475,36878117,36887672,36895017,37013435,37096727,37133234,37211517,37213457,37216695,37222693,37225030,37233194,37244391,37259350,37271882,37314922,37315960,37342763,37353668	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	8697182	8697206	8697193	+	High_confidence	4	4	12	0.327631	3.027169	chr12	8697043	8697239	SINE|MIR|MIRc	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	31121301	31121302	31121301	-	RAMPAGE_only	8	9	9	0.245723	2.750000	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.888889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	130978873	130978881	130978880	-	High_confidence	8	8	15	0.409539	3.093069	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.800000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	162759933	162759966	162759965	+	RAMPAGE_only	4	4	20	0.546052	3.431624	chr1	162760014	162760180	SINE|MIR|MIR3	+	chr1	162632469	162780421	DDR2|ENST00000367921.7	+	162632469,162655210,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162780421	0.950000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40355936	40356127	40356126	-	RAMPAGE_only	15	18	87	2.375327	5.350315	chr2	40356023	40356339	LINE|L2|L2b	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	64279028	64279361	64279236	-	RAMPAGE_only	42	42	450	12.286173	6.426784	chr4	64278475	64279257	LINE|L1|L1MA5A	-	chr4	64277701	64409398	MSTRG.16353.5	-	64277701,64281040,64281473,64289709,64299973,64305165,64309825,64314647,64322688,64328511,64375171,64409117	64280199,64281086,64281559,64289767,64300017,64305238,64313110,64314763,64322792,64328556,64375223,64409398	0.988889
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	64226142	64226180	64226158	-	High_confidence	153	154	692	18.893404	7.306098	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.968208
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr8	123025813	123025816	123025815	-	High_confidence	3	5	8	0.218421	2.807355	chr8	123025804	123025900	SINE|MIR|MIRc	-	chr8	123015445	123025772	DERL1|ENST00000523036.1	-	123015445,123019194,123021446,123022683,123023712,123024985,123025722	123015585,123019305,123021499,123022779,123023739,123025050,123025772	0.625000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	41456601	41456616	41456608	-	RAMPAGE_only	10	10	32	0.873683	4.202820	chr5	41456571	41456939	LTR|ERVL-MaLR|MLT1A0	+	chr5	41306956	41510601	MSTRG.17239.3	-	41306956,41381825,41385183,41404346,41510423	41313770,41382534,41385943,41464417,41510601	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	15607186	15607208	15607186	-	High_confidence	76	82	327	8.927952	6.954479	chrX	15606866	15607460	LTR|ERV1|LTR10C	+	chrX	15561032	15607254	MSTRG.22532.1	-	15561032,15564023,15566252,15567725,15570294,15571623,15572200,15573366,15575665,15578088,15581220,15585474,15587752,15589343,15591712,15592228,15594844,15600725,15607136	15562013,15564218,15566369,15567826,15570353,15571796,15572323,15573465,15575810,15578315,15581390,15585572,15587858,15589456,15591856,15592322,15595003,15601014,15607254	0.782875
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	9775665	9775669	9775668	+	High_confidence	4	4	11	0.300329	3.121928	chr11	9775466	9776058	LTR|ERVL|MER21C	+	chr11	9775730	9808379	SBF2-AS1|ENST00000534671.1	+	9775730,9780375,9807847	9775765,9780575,9808379	0.818182
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	185620090	185620133	185620090	-	RAMPAGE_only	20	28	168	4.586838	5.039427	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.851190
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr4	141333512	141333582	141333512	+	RAMPAGE_only	20	21	155	4.231904	5.370306	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141636595	141733987	IL15|NM_172175.2	+	141636595,141656185,141688821,141719377,141720468,141721058,141721923,141727939,141729846,141732737	141636748,141656307,141689035,141719476,141720566,141721177,141722008,141727984,141729984,141733987	0.522581
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	55618850	55618904	55618850	-	High_confidence	4	5	16	0.436842	3.750000	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.937500
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr16	64251926	64251942	64251941	-	RAMPAGE_only	3	4	6	0.163816	2.584963	chr16	64251704	64252034	LTR|ERVL-MaLR|MLT1H	-	chr16	64242607	64343909	AC012322.1|ENST00000561657.1	-	64242607,64245743,64294079,64317565,64343528	64242850,64245777,64294166,64317681,64343909	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	65382641	65382673	65382641	-	High_confidence	3	5	19	0.518750	3.836592	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382638	SLC25A45|ENST00000294187.10	-	65375193,65376817,65379375,65379866,65380131,65382485	65376675,65377076,65379561,65379938,65380175,65382638	0.578947
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr6	26474340	26474346	26474345	+	RAMPAGE_only	7	7	13	0.354934	3.700440	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.615385
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr20	45833293	45833315	45833293	-	High_confidence	2	2	8	0.218421	2.807355	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	160199155	160199156	160199155	+	High_confidence	5	6	7	0.191118	2.521641	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr10	90918370	90918580	90918482	-	RAMPAGE_only	35	45	277	7.562822	5.261190	chr10	90918344	90918516	SINE|MIR|MIR3	-	chr10	90912095	90921276	MSTRG.2984.1	-	90912095,90915542,90915781,90916170	90912976,90915641,90915880,90921276	0.992780
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr9	121657626	121657627	121657626	+	RAMPAGE_only	12	12	18	0.491447	3.852169	chr9	121657411	121657646	SINE|MIR|MIRb	-	chr9	121651593	121785530	DAB2IP|ENST00000408936.7	+	121651593,121678677,121699324,121757012,121758897,121759884,121763504,121763734,121766493,121768431,121770545,121772606,121774259,121776197,121781463,121782330	121651899,121678781,121699458,121757166,121758996,121760439,121763649,121763879,121766730,121768633,121770724,121773495,121774412,121776391,121781551,121785530	0.555556
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40376936	40377108	40377013	-	RAMPAGE_only	4	5	82	2.238814	5.432181	chr2	40376907	40377500	LTR|ERVL-MaLR|MLT1E	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.939024
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	52542753	52542758	52542753	+	RAMPAGE_only	5	5	10	0.273026	2.725481	chr19	52542563	52542810	LTR|ERV1|MER4A1	-	chr19	52535984	52553436	ZNF808|ENST00000461321.1	+	52535984,52543265,52547511,52553106	52536046,52543347,52547638,52553436	0.900000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chrX	44951147	44951148	44951147	+	RAMPAGE_only	340	359	377	10.293083	6.793308	chrX	44950752	44951268	LTR|ERV1|LTR10D	+	chrX	44873510	45112602	KDM6A|ENST00000377967.8	+	44873510,44873923,44961283,44974665,45010960,45020609,45034930,45037654,45051708,45053828,45059005,45059246,45060021,45061323,45062646,45063421,45069578,45076696,45078399,45079145,45082575,45082714,45083459,45085864,45089742,45090722,45107409,45110078,45111381	44873712,44873987,44961392,44974715,45011019,45020730,45034985,45037689,45051802,45053955,45059104,45059466,45060156,45061419,45062748,45063817,45070357,45076826,45078505,45079351,45082640,45082789,45083608,45085979,45089930,45090864,45107536,45110249,45112602	0.517241
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	24542102	24542127	24542111	+	RAMPAGE_only	3	3	12	0.327631	2.855389	chr2	24541918	24542243	LINE|L1|L1M6	+	chr2	24517077	24552305	MSTRG.11883.1	+	24517077	24552305	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr18	28159296	28159297	28159296	-	High_confidence	11	12	12	0.327631	3.027169	chr18	28159142	28159517	LTR|ERVL|LTR79	+	chr18	28011917	28159297	CDH2|ENST00000413878.1	-	28011917,28013682,28147672,28159148	28011992,28013909,28147784,28159297	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	14295866	14295867	14295866	+	RAMPAGE_only	16	18	21	0.573355	4.021928	chr5	14295856	14295957	LTR|LTR|MamRep1527	-	chr5	14293040	14489165	TRIO|ENST00000515144.5	+	14293040,14297071,14304460,14316512,14330777,14336535,14358177,14359356,14363731,14364649,14366859,14368707,14369373,14374228,14378011,14381129,14387437,14387731,14388612,14389288,14390230,14390900,14394037,14397042,14398879,14400962,14405847,14406572,14419777,14461018,14462754,14465544,14471317,14472591,14473993,14476893,14479260,14479918,14481233,14481540,14482581,14485068,14487463	14293134,14297263,14304592,14316743,14330900,14336727,14358347,14359531,14363927,14364816,14366979,14368899,14369523,14374343,14378127,14381252,14387632,14387847,14388679,14389398,14390300,14390990,14394130,14397154,14399070,14401064,14405990,14406672,14420021,14461311,14462925,14465640,14471466,14472658,14474097,14476963,14479350,14480011,14481284,14481618,14482773,14485246,14489165	0.666667
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr19	5680196	5680197	5680196	-	High_confidence	4	4	7	0.191118	2.584963	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.857143
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr21	44962756	44962798	44962790	+	RAMPAGE_only	12	13	58	1.583551	5.183424	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44958245	44976973	FAM207A|ENST00000479127.5	+	44958245,44960099,44967033,44973196,44976679	44958424,44960168,44967181,44973265,44976973	0.931034
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	120288993	120289012	120288993	+	RAMPAGE_only	6	6	14	0.382236	3.182006	chr1	120288937	120289059	SINE|MIR|MIR3	-	chr1	120197084	120339228	MSTRG.1320.1	+	120197084,120251413,120256602,120277925,120319190,120319503,120327024	120197317,120251469,120256754,120278036,120319314,120319679,120339228	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr3	39387780	39387800	39387780	+	High_confidence	7	7	14	0.382236	3.392747	chr3	39387553	39387832	LINE|L2|L2	-	chr3	39387807	39391510	SLC25A38|ENST00000642978.1	+	39387807,39389361,39389494,39390422,39391440	39387865,39389389,39389616,39390507,39391510	0.500000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	54630783	54630802	54630783	+	RAMPAGE_only	2	2	8	0.218421	2.521641	chr1	54630775	54633691	LTR|ERVK|HERVK9-int	+	chr1	54548227	54639192	ACOT11|ENST00000371316.3	+	54548227,54584654,54585834,54592545,54593940,54594555,54597258,54599295,54601268,54602668,54603870,54604345,54605075,54607133,54607941,54630733,54634687	54548342,54584862,54585904,54592606,54594039,54594691,54597415,54599415,54601413,54602724,54603937,54604429,54605209,54607265,54608068,54630886,54639192	0.875000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr11	89604527	89604549	89604546	+	RAMPAGE_only	2	2	9	0.245723	2.750000	chr11	89604426	89604550	LINE|L2|L2b	-	chr11	89639236	89698599	FOLH1B|ENST00000529567.6	+	89639236,89645002,89652495,89658618,89659537,89662149,89669404,89670389,89671886,89674086,89676104,89680608,89687346,89688583,89690881,89691446,89696632,89698409	89639342,89645189,89652597,89658744,89659724,89662243,89669503,89670475,89672006,89674169,89676168,89680676,89687438,89688674,89691146,89691528,89696725,89698599	0.555556
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr5	151676440	151676460	151676459	-	RAMPAGE_only	3	3	8	0.218421	2.750000	chr5	151676278	151676631	DNA|hAT-Charlie|MER113	+	chr5	151667473	151671829	SPARC|ENST00000524277.1	-	151667473,151669663,151671572	151667600,151669784,151671829	0.750000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	237141890	237141930	237141901	+	RAMPAGE_only	4	4	15	0.409539	3.240224	chr1	237141525	237141929	LTR|ERVL|LTR57	-	chr1	237051334	237208919	MSTRG.2287.2	+	237051334,237056808,237100537	237056694,237066885,237208919	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr1	201370152	201370180	201370152	-	RAMPAGE_only	7	8	14	0.382236	3.521641	chr1	201369918	201370169	SINE|MIR|MIRb	+	chr1	201360826	201373254	MSTRG.1990.15	-	201360826,201361912,201362385,201363295,201364297,201365190,201365609,201366837,201367770,201368161,201373213	201361369,201362022,201362394,201363406,201364375,201365307,201365670,201366871,201367806,201372155,201373254	1.000000
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr12	47753920	47753962	47753920	+	RAMPAGE_only	3	3	11	0.300329	3.459432	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47758577	47780307	SLC48A1|ENST00000547002.5	+	47758577,47760215,47772169,47779027,47780144	47758660,47760401,47772320,47779195,47780307	0.545455
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr2	40420835	40421011	40420911	-	RAMPAGE_only	6	8	61	1.665459	5.370659	chr2	40420848	40421002	SINE|MIR|MIRb	+	chr2	40284627	40430271	MSTRG.12053.18	-	40284627,40302521,40332051,40358072,40375771,40381313,40416895,40427631	40302468,40331969,40357363,40375731,40381256,40416803,40427473,40430271	0.950820
heart_female_fetal_19_weeks_and_female_fetal_28_weeks	chr21	25518541	25518542	25518541	-	High_confidence	4	4	7	0.191118	2.807355	chr21	25518301	25523254	LINE|L1|L1M1	+	chr21	25515472	25518338	AP000221.1|ENST00000419694.1	-	25515472,25518275	25516455,25518338	0.571429
heart_left_ventricle_female_adult_51_years	chr11	123060137	123060257	123060211	-	High_confidence	39	40	516	24.276832	5.517316	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.635659
heart_left_ventricle_female_adult_51_years	chr1	16020468	16020479	16020470	-	High_confidence	23	42	100	4.704812	5.308205	chr1	16020340	16020460	SINE|MIR|MIR3	-	chr1	16014027	16019594	HSPB7|ENST00000375718.4	-	16014027,16017073,16017764,16019133	16015759,16017207,16017852,16019594	0.950000
heart_left_ventricle_female_adult_51_years	chr10	113662680	113662715	113662690	-	RAMPAGE_only	37	37	113	5.316438	5.376540	chr10	113662586	113662659	LINE|L1|L1MA4A	-	chr10	113588715	113664046	NRAP|ENST00000369360.7	-	113588715,113589665,113590577,113592193,113595622,113597085,113597968,113604608,113605761,113606177,113608413,113610458,113612233,113614182,113614838,113615711,113617454,113620603,113621868,113623528,113624825,113626046,113628916,113629587,113631508,113631852,113633083,113634111,113640226,113641364,113645824,113646922,113650036,113650437,113651802,113652934,113654020,113657469,113662678,113663351,113663810	113589079,113589797,113590889,113592301,113595727,113597184,113598073,113604920,113605869,113606282,113608512,113610563,113612431,113614296,113614946,113615816,113617553,113620708,113622180,113623636,113624930,113626145,113629021,113629785,113631630,113631964,113633188,113634210,113640331,113641472,113645941,113647027,113650141,113650545,113651907,113653039,113654125,113657574,113662766,113663446,113664046	0.991150
heart_left_ventricle_female_adult_51_years	chr2	209495443	209495466	209495443	+	RAMPAGE_only	4	4	10	0.470481	2.921928	chr2	209495053	209495629	LINE|L1|L1P3	+	chr2	209424057	209730518	MAP2|ENST00000199940.10	+	209424057,209507591,209580035,209625052,209653141,209678571,209680749,209700276,209704449,209705579,209709913,209723594,209725708,209729849,209730181	209424276,209507641,209580100,209625129,209653432,209678685,209680827,209700338,209704620,209705727,209710254,209723687,209725790,209729962,209730518	1.000000
heart_left_ventricle_female_adult_51_years	chr22	46575640	46575744	46575640	+	High_confidence	11	12	56	2.634695	5.073080	chr22	46575415	46575643	LINE|L2|L2c	-	chr22	46576011	46637936	GRAMD4|ENST00000447351.5	+	46576011,46626750,46637839	46576078,46626961,46637936	0.767857
heart_left_ventricle_female_adult_51_years	chr4	89291410	89291411	89291410	-	RAMPAGE_only	14	14	18	0.846866	3.149673	chr4	89291199	89291835	LINE|L1|L1ME1	-	chr4	89236385	89308010	GPRIN3|ENST00000609438.1	-	89236385,89307614	89250233,89308010	1.000000
heart_left_ventricle_female_adult_51_years	chr2	177499706	177499727	177499726	+	RAMPAGE_only	3	3	7	0.329337	2.521641	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177392767	177538418	AGPS|ENST00000409888.1	+	177392767,177420268,177521328,177523747,177538073	177393049,177420358,177521368,177523805,177538418	1.000000
heart_left_ventricle_female_adult_51_years	chrX	113081108	113081109	113081108	-	RAMPAGE_only	7	10	10	0.470481	3.169925	chrX	113080933	113081289	LTR|ERVL-MaLR|THE1B	-	chrX	112774502	112840815	AMOT|ENST00000304758.5	-	112774502,112778996,112780885,112782539,112790591,112791831,112804946,112809893,112811248,112815357,112832293,112840451	112778664,112779680,112781118,112782662,112790782,112791981,112805092,112809986,112811393,112815877,112832370,112840815	0.500000
heart_left_ventricle_female_adult_51_years	chr15	36594721	36594739	36594738	+	High_confidence	17	17	51	2.399454	4.663094	chr15	36594706	36594759	SINE|tRNA|LFSINE_Vert	+	chr15	36594868	36810260	C15orf41|NM_032499.5	+	36594868,36640604,36644277,36645222,36654097,36657832,36691684,36692125,36697322,36709222,36709855,36808323	36594918,36640659,36644323,36645287,36654158,36657905,36691764,36692175,36697390,36709288,36709961,36810260	0.960784
heart_left_ventricle_female_adult_51_years	chr4	86453190	86453204	86453202	-	High_confidence	6	8	20	0.940962	3.576618	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.800000
heart_left_ventricle_female_adult_51_years	chr11	126207686	126207687	126207686	-	High_confidence	6	6	8	0.376385	2.750000	chr11	126207561	126207848	SINE|Alu|AluSz	+	chr11	126202413	126207669	STRG.17948.3	-	126202413,126204230,126205467,126205687,126207532	126203657,126204328,126205612,126205781,126207669	1.000000
heart_left_ventricle_female_adult_51_years	chr2	113454746	113454755	113454746	+	RAMPAGE_only	2	2	7	0.329337	2.807355	chr2	113454787	113454885	LINE|L1|L1MC5	+	chr2	113468584	113496119	CBWD2|ENST00000479583.5	+	113468584,113482176,113493756,113493928,113495119,113495636	113471089,113482228,113493825,113493994,113495249,113496119	1.000000
heart_left_ventricle_female_adult_51_years	chr1	147760601	147760602	147760601	-	High_confidence	9	9	12	0.564577	3.277613	chr1	147760317	147760652	LINE|L2|L2c	+	chr1	147756198	147760606	GJA5|ENST00000579774.2	-	147756198,147760498	147759271,147760606	0.916667
heart_left_ventricle_female_adult_51_years	chr8	123025518	123025530	123025529	-	High_confidence	21	21	34	1.599636	3.819245	chr8	123025370	123025551	LINE|L2|L2b	+	chr8	123015441	123025650	DERL1|ENST00000519018.5	-	123015441,123019194,123021446,123022683,123023712,123024985,123025571	123015585,123019305,123021499,123022779,123023739,123025050,123025650	0.823529
heart_left_ventricle_female_adult_51_years	chr4	64279449	64279963	64279449	-	RAMPAGE_only	60	67	332	15.619977	6.736570	chr4	64279257	64279568	SINE|Alu|AluJr	-	chr4	64277701	64409398	STRG.7213.1	-	64277701,64281040,64281473,64289709,64299973,64305165,64309825,64314647,64322688,64328511,64375171,64409117	64280199,64281086,64281559,64289767,64300017,64305238,64309931,64314763,64322792,64328556,64375223,64409398	0.996988
heart_left_ventricle_female_adult_51_years	chr12	119179264	119179297	119179296	+	High_confidence	3	3	12	0.564577	3.251629	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	1.000000
heart_left_ventricle_female_adult_51_years	chr9	121286591	121286652	121286591	+	High_confidence	79	82	303	14.255581	6.719941	chr9	121286415	121286709	LINE|L2|L2b	+	chr9	121286591	121332656	GSN|ENST00000545652.6	+	121286591,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286761,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332656	0.983498
heart_left_ventricle_female_adult_51_years	chr19	1880087	1880103	1880087	-	High_confidence	8	8	17	0.799818	3.454822	chr19	1880079	1880146	DNA|hAT-Ac|OldhAT1	+	chr19	1877203	1880017	ABHD17A|ENST00000592757.1	-	1877203,1877507,1878663,1879920	1877425,1877687,1878904,1880017	0.941176
heart_left_ventricle_female_adult_51_years	chr2	186608076	186608107	186608091	+	High_confidence	3	3	10	0.470481	3.321928	chr2	186607713	186608293	LTR|ERVL?|LTR87	-	chr2	186607896	186680897	STRG.4361.2	+	186607896,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186608168,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186680897	1.000000
heart_left_ventricle_female_adult_51_years	chr1	174161446	174161465	174161464	+	RAMPAGE_only	5	5	12	0.564577	3.251629	chr1	174161256	174161539	SINE|Alu|AluSp	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	1.000000
heart_left_ventricle_female_adult_51_years	chr22	32059169	32059191	32059169	+	High_confidence	3384	3451	5741	270.103275	5.635527	chr22	32059153	32059234	SINE|Alu|AluSz6	+	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	0.965685
heart_left_ventricle_female_adult_51_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	14	14	14	0.658674	3.664498	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888512	77933384	NEXN|ENST00000401035.7	+	77888512,77916054,77917959,77918124,77925187,77926413,77926715,77929315,77933281	77888759,77916133,77918038,77918273,77925229,77926611,77926892,77929504,77933384	0.500000
heart_left_ventricle_female_adult_51_years	chr10	124678197	124678198	124678197	-	RAMPAGE_only	11	11	15	0.705722	3.640224	chr10	124678125	124678223	LINE|CR1|L3	-	chr10	124621670	124742970	FAM53B|ENST00000392754.7	-	124621670,124681606,124696157,124706635,124742427	124623604,124682379,124696212,124706887,124742970	0.866667
heart_left_ventricle_female_adult_51_years	chr19	10825196	10825221	10825220	+	RAMPAGE_only	4	4	12	0.564577	3.251629	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	0.833333
heart_left_ventricle_female_adult_51_years	chr1	100268197	100268281	100268280	+	RAMPAGE_only	17	17	66	3.105176	4.087804	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.969697
heart_left_ventricle_female_adult_51_years	chr2	13065113	13065114	13065113	+	RAMPAGE_only	9	9	11	0.517529	2.663533	chr2	13065013	13065139	DNA|PiggyBac|MER85	-	chr2	13000886	13213621	STRG.2908.1	+	13000886,13213293	13001017,13213621	1.000000
heart_left_ventricle_female_adult_51_years	chr7	102822458	102822461	102822458	-	RAMPAGE_only	9	10	15	0.705722	3.664498	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.533333
heart_left_ventricle_female_adult_51_years	chr17	1115390	1115412	1115390	-	High_confidence	2	3	8	0.376385	2.807355	chr17	1115307	1115433	LINE|L2|L2b	+	chr17	1072732	1115436	ABR|ENST00000570441.5	-	1072732,1073624,1079329,1083519,1091664,1100636,1115275	1072754,1073677,1079390,1083627,1091850,1100735,1115436	0.625000
heart_left_ventricle_female_adult_51_years	chr6	123439083	123439117	123439083	-	RAMPAGE_only	4	4	12	0.564577	3.277613	chr6	123439047	123439232	SINE|MIR|MIRb	+	chr6	123349474	123637093	TRDN|NM_001251987.1	-	123349474,123366134,123375604,123377715,123377865,123381369,123382117,123388521,123393623,123438062,123438943,123464905,123497192,123503718,123512302,123516140,123530505,123547339,123548453,123570922,123636753	123352586,123366182,123375631,123377742,123377898,123381390,123382147,123388551,123393677,123438125,123439003,123464983,123497252,123503901,123512362,123516206,123530565,123547372,123548612,123571132,123637093	0.916667
heart_left_ventricle_female_adult_51_years	chr12	47753915	47753935	47753934	+	RAMPAGE_only	5	5	13	0.611626	3.084963	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47758577	47780307	SLC48A1|ENST00000547002.5	+	47758577,47760215,47772169,47779027,47780144	47758660,47760401,47772320,47779195,47780307	0.923077
heart_left_ventricle_female_adult_51_years	chr14	81170402	81170414	81170413	-	High_confidence	7	10	26	1.223251	4.243856	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.846154
heart_left_ventricle_female_adult_51_years	chr2	182928788	182928790	182928788	-	RAMPAGE_only	4	8	9	0.423433	2.750000	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182909114	183038472	NCKAP1|ENST00000361354.8	-	182909114,182926815,182928116,182928782,182930694,182934751,182935292,182942069,182952404,182952792,182953112,182956461,182957456,182962158,182964675,182967215,182976892,182978833,182981243,182982820,182983285,182986170,182989029,182994838,182995700,183001952,183002126,183002973,183003232,183023805,183037991	182925818,182926905,182928226,182928899,182930788,182934832,182935375,182942163,182952502,182952923,182953331,182956593,182957596,182962278,182964808,182967361,182976951,182978915,182981376,182982927,182983382,182986227,182989186,182994887,182995838,183002043,183002269,183003030,183003325,183023916,183038472	0.888889
heart_left_ventricle_female_adult_51_years	chr17	59619894	59619923	59619894	+	High_confidence	1118	1193	2712	127.594510	5.263896	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.982670
heart_left_ventricle_female_adult_51_years	chr15	57451552	57451563	57451562	+	RAMPAGE_only	3	3	9	0.423433	2.750000	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.888889
heart_left_ventricle_female_adult_51_years	chr2	37737597	37737614	37737608	-	High_confidence	8	8	18	0.846866	3.734522	chr2	37737141	37737728	LINE|L1|L1MEc	+	chr2	37646483	37738468	CDC42EP3|ENST00000453555.1	-	37646483,37688078,37719537,37738358	37646822,37688175,37719944,37738468	0.888889
heart_left_ventricle_female_adult_51_years	chr3	129559620	129559635	129559620	-	High_confidence	2	2	9	0.423433	2.725481	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	0.777778
heart_left_ventricle_female_adult_51_years	chr17	77127872	77127877	77127872	+	High_confidence	79	79	136	6.398545	6.251569	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.757353
heart_left_ventricle_female_adult_51_years	chr20	50267474	50267498	50267487	+	High_confidence	3	3	14	0.658674	3.392747	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.928571
heart_left_ventricle_female_adult_51_years	chr1	201360523	201360556	201360555	-	RAMPAGE_only	17	17	26	1.223251	3.584303	chr1	201360361	201360542	SINE|MIR|MIR	-	chr1	201359007	201363350	TNNT2|ENST00000476888.5	-	201359007,201359622,201361278,201361950,201362385,201363295	201359255,201359663,201361369,201362022,201362394,201363350	1.000000
heart_left_ventricle_female_adult_51_years	chr9	132935039	132935057	132935039	-	High_confidence	3	4	10	0.470481	3.121928	chr9	132935029	132935100	SINE|tRNA|LFSINE_Vert	+	chr9	132910260	132935090	TSC1|ENST00000647078.1	-	132910260,132911001,132911409,132912281,132921362,132921818,132923347,132925586,132927200,132928766,132935032	132910689,132911113,132911568,132912457,132921436,132921973,132923492,132925739,132927304,132928952,132935090	1.000000
heart_left_ventricle_female_adult_51_years	chr9	20658558	20658619	20658606	+	High_confidence	4	5	17	0.799818	2.608459	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.588235
heart_left_ventricle_female_adult_51_years	chr4	158172987	158173025	158173024	-	High_confidence	168	169	252	11.856127	6.299878	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158127544	158173023	STRG.7869.5	-	158127544,158155610,158170465,158172867	158127614,158155825,158171599,158173023	0.972222
heart_left_ventricle_female_adult_51_years	chr6	118514434	118514489	118514467	-	RAMPAGE_only	8	10	32	1.505540	4.478232	chr6	118514243	118514552	SINE|Alu|AluSz	+	chr6	118460771	118537635	STRG.10818.3	-	118460771,118469071,118470536,118479870,118480395,118481778,118483705,118491685,118511297,118523801,118537523	118465568,118469303,118470644,118479921,118480513,118481933,118483858,118491865,118511415,118523920,118537635	0.750000
heart_left_ventricle_female_adult_51_years	chr5	150650434	150650494	150650459	+	RAMPAGE_only	12	15	45	2.117166	4.941744	chr5	150650382	150650562	SINE|MIR|MIR3	+	chr5	150640677	150652337	SYNPO|ENST00000519664.1	+	150640677,150647943	150640854,150652337	1.000000
heart_left_ventricle_female_adult_51_years	chr1	214312633	214312655	214312654	+	RAMPAGE_only	71	71	147	6.916074	6.079016	chr1	214312302	214313119	LINE|L2|L2a	-	chr1	214327493	214331070	SMYD2|ENST00000484459.1	+	214327493,214330167,214330949	214327724,214330278,214331070	0.530612
heart_left_ventricle_female_adult_51_years	chr15	34988756	34988767	34988756	-	High_confidence	6	6	22	1.035059	3.823068	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978342	34988757	STRG.21107.9	-	34978342,34987556,34988502	34983490,34987673,34988757	1.000000
heart_left_ventricle_female_adult_51_years	chr2	173224027	173224169	173224027	+	RAMPAGE_only	11	11	90	4.234331	5.252027	chr2	173223967	173224276	LINE|L2|L2a	-	chr2	173075841	173227146	MAP3K20|ENST00000338983.7	+	173075841,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173221149	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173227146	0.988889
heart_left_ventricle_female_adult_51_years	chr14	50159440	50159441	50159440	-	RAMPAGE_only	8	8	10	0.470481	3.121928	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	1.000000
heart_left_ventricle_female_adult_51_years	chr3	134485443	134485490	134485443	-	High_confidence	10	10	67	3.152224	4.993338	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.955224
heart_left_ventricle_female_adult_51_years	chr8	93017616	93017716	93017667	-	High_confidence	33	33	239	11.244501	6.543340	chr8	93017253	93017736	LTR|ERVL|LTR79	-	chr8	92886234	93017673	STRG.13498.3	-	92886234,92891988,92916928,92921502,92954405,93017608	92886735,92892074,92917010,92921660,92954564,93017673	0.820084
heart_left_ventricle_female_adult_51_years	chr15	82143715	82143716	82143715	-	High_confidence	4	4	7	0.329337	2.521641	chr15	82143509	82143849	LINE|CR1|L3	+	chr15	82130290	82143713	STRG.21764.2	-	82130290,82138657,82143523	82130561,82138842,82143713	1.000000
heart_left_ventricle_female_adult_51_years	chr12	46243221	46243247	46243246	-	RAMPAGE_only	2	2	8	0.376385	2.500000	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	1.000000
heart_left_ventricle_female_adult_51_years	chr19	41978611	41978646	41978629	-	RAMPAGE_only	6	6	19	0.893914	3.572431	chr19	41978480	41978588	LINE|L2|L2b	-	chr19	41966581	41993467	ATP1A3|NM_001256213.1	-	41966581,41967248,41967661,41968784,41969434,41970184,41970387,41975628,41976415,41977935,41978150,41978605,41981501,41981721,41981907,41984917,41985305,41985863,41986115,41987935,41988317,41988475,41993392	41966965,41967340,41967763,41968915,41969580,41970308,41970542,41975797,41976566,41978072,41978326,41978798,41981636,41981831,41982106,41985186,41985423,41985998,41986229,41988139,41988377,41988562,41993467	0.947368
heart_left_ventricle_female_adult_51_years	chr3	152396030	152396085	152396084	+	RAMPAGE_only	6	10	29	1.364396	2.968028	chr3	152395923	152396404	DNA|hAT-Charlie|MER1A	+	chr3	152300197	152459302	MBNL1|ENST00000464596.5	+	152300197,152414940,152432716,152445281,152447619,152459270	152300367,152415111,152432920,152445539,152447773,152459302	0.965517
heart_left_ventricle_female_adult_51_years	chr1	212233400	212233433	212233406	-	RAMPAGE_only	27	28	102	4.798909	5.135868	chr1	212233221	212233468	LINE|CR1|L3b	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	0.980392
heart_left_ventricle_female_adult_51_years	chr8	57746128	57746129	57746128	+	High_confidence	20	20	20	0.940962	3.308695	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	1.000000
heart_left_ventricle_female_adult_51_years	chrX	44314305	44314339	44314305	-	High_confidence	7	7	29	1.364396	4.323161	chrX	44314142	44314275	LINE|L1|L1ME3Cz	-	chrX	44147856	44314296	STRG.28531.2	-	44147856,44163921,44176291,44178366,44229648,44232480,44235304,44242120,44248271,44248802,44250193,44261074,44272685,44312567,44314196	44148896,44164027,44176384,44178564,44229779,44232677,44235447,44242289,44248410,44248916,44250445,44261298,44272836,44312756,44314296	0.931034
heart_left_ventricle_female_adult_51_years	chr12	131000384	131000426	131000413	+	RAMPAGE_only	5	6	17	0.799818	3.625000	chr12	131000459	131000769	SINE|Alu|AluSx1	+	chr12	131002498	131141460	ADGRD1|ENST00000376682.8	+	131002498,131003184,131004185,131005971,131014198,131076800,131084539,131104830,131105753,131108723,131118384,131120846,131131724,131136036,131136972,131138136,131139167	131002837,131003302,131004296,131006047,131014340,131076874,131084663,131104934,131105865,131108877,131118451,131120913,131131816,131136163,131137014,131138229,131141460	0.941176
heart_left_ventricle_female_adult_51_years	chr8	39017047	39017078	39017077	+	High_confidence	4	4	8	0.376385	3.000000	chr8	39016988	39017120	SINE|MIR|MIRb	-	chr8	39017035	39021713	ADAM9|ENST00000481058.1	+	39017035,39018852,39021642	39017414,39018918,39021713	0.625000
heart_left_ventricle_female_adult_51_years	chr8	18083388	18083468	18083388	-	High_confidence	9	9	24	1.129155	4.136842	chr8	18083239	18083389	SINE|MIR|MIR3	+	chr8	18056458	18083408	ASAH1|ENST00000636691.1	-	18056458,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18067219,18069791,18071299,18075540,18083121	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18064531,18067298,18069878,18071390,18075587,18083408	0.875000
heart_left_ventricle_female_adult_51_years	chr7	113918672	113918730	113918672	-	High_confidence	9	9	28	1.317347	3.997953	chr7	113918643	113918708	DNA|hAT-Ac|OldhAT1	-	chr7	113874297	113918996	STRG.12372.1	-	113874297,113878383,113882038,113882261,113918214,113918566	113877936,113880125,113882163,113882320,113918297,113918996	0.714286
heart_left_ventricle_female_adult_51_years	chr4	62133740	62133794	62133767	+	RAMPAGE_only	170	184	507	23.853398	7.165261	chr4	62133506	62134415	LTR|ERVL|MER21A	+	chr4	62214637	62215704	STRG.7181.1	+	62214637	62215704	0.540434
heart_left_ventricle_female_adult_51_years	chr16	5003099	5003121	5003108	+	High_confidence	3	4	14	0.658674	3.546594	chr16	5003026	5003140	SINE|MIR|MIR	-	chr16	5003079	5019153	STRG.22232.2	+	5003079,5005913,5007351,5008420,5011094,5014858	5003573,5006048,5007486,5008648,5011273,5019153	0.928571
heart_left_ventricle_female_adult_51_years	chr8	86417214	86417236	86417235	+	High_confidence	77	78	186	8.750951	6.368352	chr8	86417268	86417372	DNA|hAT-Charlie|MER58D	+	chr8	86417222	86431665	WWP1|ENST00000521079.1	+	86417222,86425222,86427642,86430696,86431405,86431614	86417279,86425318,86427817,86430751,86431490,86431665	0.784946
heart_left_ventricle_female_adult_51_years	chr7	159097906	159097923	159097922	+	High_confidence	14	14	31	1.458492	4.429530	chr7	159097933	159097997	DNA|hAT-Charlie|MER5A	+	chr7	159097888	159104051	STRG.12803.1	+	159097888	159104051	1.000000
heart_left_ventricle_female_adult_51_years	chr3	48979523	48979574	48979523	+	RAMPAGE_only	5	5	21	0.988011	3.594466	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	1.000000
heart_left_ventricle_female_adult_51_years	chr5	180830987	180831032	180831009	+	High_confidence	12	12	56	2.634695	5.159772	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.750000
heart_left_ventricle_female_adult_51_years	chr1	148900909	148900917	148900916	+	RAMPAGE_only	8	10	19	0.893914	4.142664	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148889783	149024552	STRG.1730.5	+	148889783,148929196,148931799,148932112,148937746,148960653,148961836,148962195,148962427,148965483,148966542,148966838,148967725,148968835,148972179,148972510,148974513,148977936,148978277,148979736,148981269,148991884,148998142,149001590,149002849,149003610,149004908,149007200,149008443,149009567,149010442,149012590,149016298,149017747,149018541,149020146,149021028,149024444	148889894,148929273,148931923,148932288,148937864,148960785,148961956,148962288,148962640,148965642,148966656,148966976,148967905,148969030,148972344,148972592,148974605,148978053,148978415,148979849,148981397,148991973,148998375,149001696,149003042,149003730,149005437,149007436,149008495,149009791,149010595,149012776,149016550,149017879,149018661,149020336,149021153,149024552	1.000000
heart_left_ventricle_female_adult_51_years	chr8	93698580	93698581	93698580	+	High_confidence	26	26	28	1.317347	4.176992	chr8	93698481	93698872	LTR|ERVL-MaLR|MLT1H2	+	chr8	93698560	93709779	FAM92A|ENST00000523475.5	+	93698560,93701223,93703619,93704908,93708010,93709770	93698747,93701458,93703688,93705010,93708016,93709779	0.857143
heart_left_ventricle_female_adult_51_years	chr6	4346863	4346981	4346863	-	High_confidence	5	5	28	1.317347	3.717850	chr6	4346798	4346936	SINE|MIR|MIRb	-	chr6	4345742	4347037	AL159166.1|ENST00000437430.2	-	4345742,4346632,4347009	4345806,4346869,4347037	0.785714
heart_left_ventricle_female_adult_51_years	chr14	23401199	23401200	23401199	-	RAMPAGE_only	19	22	22	1.035059	3.970573	chr14	23401007	23401306	SINE|Alu|AluSz	-	chr14	23382018	23407592	MYH6|ENST00000356287.3	-	23382018,23382427,23383224,23384441,23384915,23385927,23386314,23387528,23387757,23388154,23388858,23389392,23389592,23390056,23392561,23392911,23393341,23393665,23394067,23396283,23396693,23396962,23397169,23397542,23398727,23400255,23400708,23402463,23402696,23403347,23403714,23404295,23404710,23405099,23405222,23405626,23407022,23407575	23382063,23382562,23383320,23384717,23385041,23386131,23386623,23387653,23387923,23388338,23389055,23389511,23389719,23390446,23392652,23393057,23393518,23393908,23394323,23396420,23396817,23397080,23397257,23397613,23399037,23400426,23400977,23402602,23402800,23403446,23403778,23404388,23404822,23405127,23405379,23405770,23407236,23407592	0.818182
heart_left_ventricle_female_adult_51_years	chr14	38948245	38948246	38948245	-	High_confidence	5	5	8	0.376385	2.750000	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	0.750000
heart_left_ventricle_female_adult_51_years	chr2	229232042	229232054	229232042	-	High_confidence	6	6	14	0.658674	3.085055	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.785714
heart_left_ventricle_female_adult_51_years	chr1	33021455	33021456	33021455	-	RAMPAGE_only	13	14	15	0.705722	3.640224	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010630	33013287	AK2|ENST00000491241.1	-	33010630,33011447,33012073,33013206	33010833,33011710,33012122,33013287	0.600000
heart_left_ventricle_female_adult_51_years	chr1	201360583	201360613	201360583	-	RAMPAGE_only	2	2	6	0.282289	2.584963	chr1	201360361	201360542	SINE|MIR|MIR	-	chr1	201359007	201363350	TNNT2|ENST00000476888.5	-	201359007,201359622,201361278,201361950,201362385,201363295	201359255,201359663,201361369,201362022,201362394,201363350	1.000000
heart_left_ventricle_female_adult_51_years	chr9	113484732	113484733	113484732	+	RAMPAGE_only	15	15	15	0.705722	2.973557	chr9	113484629	113484751	SINE|MIR|MIR	+	chr9	113501370	113507509	RGS3|ENST00000466314.5	+	113501370,113505017,113505441,113506387,113507286	113501434,113505092,113505523,113506493,113507509	0.533333
heart_left_ventricle_female_adult_51_years	chr1	20685271	20685296	20685271	-	High_confidence	3	4	13	0.611626	3.418296	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.923077
heart_left_ventricle_female_adult_51_years	chr15	84836072	84836080	84836072	+	RAMPAGE_only	6	6	11	0.517529	3.459432	chr15	84835841	84837447	LINE|L2|L2a	-	chr15	84816679	84873482	ALPK3|NM_020778.4	+	84816679,84823329,84827483,84838979,84839701,84856391,84859242,84859775,84860036,84862634,84863551,84864441,84867316,84868110	84817595,84823368,84827605,84839097,84840932,84858555,84859390,84859903,84860072,84862915,84863640,84864665,84867365,84873482	1.000000
heart_left_ventricle_female_adult_51_years	chr12	45292684	45292711	45292685	+	High_confidence	65	84	280	13.173474	5.901741	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.975000
heart_left_ventricle_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	14	14	14	0.658674	3.182006	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
heart_left_ventricle_female_adult_51_years	chr7	131510328	131510330	131510329	-	High_confidence	6	9	12	0.564577	3.188722	chr7	131510213	131510511	SINE|Alu|AluSx3	+	chr7	131509068	131510898	PODXL|ENST00000482581.1	-	131509068,131510827	131509585,131510898	0.666667
heart_left_ventricle_female_adult_51_years	chr9	121657626	121657627	121657626	+	RAMPAGE_only	6	6	6	0.282289	2.584963	chr9	121657411	121657646	SINE|MIR|MIRb	-	chr9	121651593	121785530	DAB2IP|ENST00000408936.7	+	121651593,121678677,121699324,121757012,121758897,121759884,121763504,121763734,121766493,121768431,121770545,121772606,121774259,121776197,121781463,121782330	121651899,121678781,121699458,121757166,121758996,121760439,121763649,121763879,121766730,121768633,121770724,121773495,121774412,121776391,121781551,121785530	0.833333
heart_left_ventricle_female_adult_51_years	chrX	48589981	48590007	48590006	+	High_confidence	6	6	12	0.564577	3.251629	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48590041	48598827	WDR13|ENST00000470124.1	+	48590041,48597957,48598716	48590287,48598037,48598827	0.833333
heart_left_ventricle_female_adult_51_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	10	10	10	0.470481	3.121928	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
heart_left_ventricle_female_adult_51_years	chr15	90762289	90762407	90762406	+	High_confidence	6	6	53	2.493551	4.756038	chr15	90762254	90762815	LINE|L2|L2b	-	chr15	90762395	90811327	BLM|ENST00000560136.5	+	90762395,90762965,90766909,90769132,90769437,90782821,90784920,90790648,90794166,90798189,90803520,90804166,90809136,90811204	90762422,90763157,90767023,90769231,90769586,90782928,90785081,90790844,90794357,90798337,90803720,90804359,90809259,90811327	0.886792
heart_left_ventricle_female_adult_51_years	chr2	37020131	37020138	37020137	-	RAMPAGE_only	10	10	16	0.752770	3.875000	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	36980896	37084342	HEATR5B|ENST00000233099.5	-	36980896,36988645,36990647,37000585,37002305,37003541,37005631,37007049,37008610,37013840,37019808,37020654,37027922,37028680,37032628,37037854,37040328,37041132,37049652,37053501,37056439,37057316,37058450,37058887,37060580,37061938,37064739,37065754,37068680,37070229,37072109,37075484,37076910,37079119,37083288,37084268	36981794,36988859,36990799,37000813,37002572,37003686,37005759,37007304,37008848,37014020,37019877,37020836,37028174,37028920,37032773,37038024,37040518,37041292,37049843,37053607,37056615,37057480,37058560,37058987,37060733,37062050,37064990,37065910,37068930,37070387,37072281,37075634,37077019,37079331,37083436,37084342	0.687500
heart_left_ventricle_female_adult_51_years	chr2	26268564	26268601	26268564	+	RAMPAGE_only	2	2	8	0.376385	2.750000	chr2	26268173	26268864	LINE|L1|L1MD3	+	chr2	26261020	26290464	HADHB|ENST00000545822.2	+	26261020,26263379,26269952,26273650,26277072,26278613,26279134,26279993,26282844,26283003,26284116,26284882,26285406,26289917	26261063,26263479,26269997,26273750,26277160,26278801,26279315,26280115,26282924,26283051,26284204,26284957,26285571,26290464	1.000000
heart_left_ventricle_female_adult_51_years	chr4	184537538	184537596	184537595	-	High_confidence	6	6	22	1.035059	3.317640	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.909091
heart_left_ventricle_female_adult_51_years	chr1	12356414	12356456	12356414	+	High_confidence	6	7	24	1.129155	2.676737	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12356350	12510346	VPS13D|ENST00000646411.1	+	12356350,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12356524,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	0.833333
heart_left_ventricle_female_adult_51_years	chr13	112725732	112725778	112725751	+	RAMPAGE_only	4	5	20	0.940962	3.826875	chr13	112725697	112725770	LINE|CR1|L3b	+	chr13	112703286	112810699	ATP11A|ENST00000466946.5	+	112703286,112785134,112804956,112806212,112810618	112703342,112785257,112805046,112806293,112810699	0.700000
heart_left_ventricle_female_adult_51_years	chr6	28354199	28354206	28354199	-	High_confidence	6	8	16	0.752770	3.625000	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324736	28354195	ZSCAN31|ENST00000396838.6	-	28324736,28327382,28329302,28336789,28337755,28341745,28353861,28354130	28326854,28327533,28329714,28336943,28337893,28341792,28353952,28354195	0.875000
heart_left_ventricle_female_adult_51_years	chr7	103353922	103353946	103353930	+	High_confidence	3	3	9	0.423433	2.947703	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.777778
heart_left_ventricle_female_adult_51_years	chr16	2757851	2757899	2757851	+	High_confidence	4	4	28	1.317347	4.235926	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.928571
heart_left_ventricle_female_adult_51_years	chr3	135965679	135965771	135965748	+	High_confidence	23	25	139	6.539689	5.943516	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.985612
heart_left_ventricle_female_adult_51_years	chr19	46350849	46350872	46350849	+	RAMPAGE_only	3	5	9	0.423433	2.725481	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	1.000000
heart_left_ventricle_female_adult_51_years	chr1	19344359	19344412	19344388	-	RAMPAGE_only	5	5	25	1.176203	4.001629	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.920000
heart_left_ventricle_female_adult_51_years	chr9	121281793	121281821	121281793	+	High_confidence	8	8	22	1.035059	3.697846	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121281471	121321311	GSN|ENST00000483960.5	+	121281471,121282438,121283318,121297765,121300055,121301962,121318734,121321267	121281562,121282550,121283392,121297842,121300126,121302149,121318880,121321311	0.500000
heart_left_ventricle_female_adult_51_years	chr10	133369958	133370010	133369958	-	RAMPAGE_only	4	4	33	1.552588	4.476064	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
heart_left_ventricle_female_adult_51_years	chr16	64251894	64251942	64251939	-	High_confidence	24	24	97	4.563668	5.036604	chr16	64251704	64252034	LTR|ERVL-MaLR|MLT1H	-	chr16	64184718	64251940	STRG.22750.1	-	64184718,64251817	64185665,64251940	0.845361
heart_left_ventricle_female_adult_51_years	chr1	120288996	120289021	120289011	+	RAMPAGE_only	3	3	11	0.517529	3.095795	chr1	120288937	120289059	SINE|MIR|MIR3	-	chr1	120277656	120331852	STRG.1561.4	+	120277656,120319190,120319503,120327434	120278036,120319314,120319679,120331852	1.000000
heart_left_ventricle_female_adult_51_years	chr7	80524856	80524872	80524871	+	RAMPAGE_only	4	4	17	0.799818	3.572469	chr7	80524761	80524908	LTR|ERV1|LTR38B	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.823529
heart_left_ventricle_female_adult_51_years	chr16	30499550	30499551	30499550	-	High_confidence	8	8	12	0.564577	3.251629	chr16	30499510	30499629	SINE|MIR|MIR1_Amn	+	chr16	30498765	30499554	AC116348.2|ENST00000563751.1	-	30498765,30499363	30499151,30499554	0.916667
heart_left_ventricle_female_adult_51_years	chr12	32834221	32834222	32834221	-	RAMPAGE_only	8	8	8	0.376385	2.750000	chr12	32834048	32834260	LINE|L2|L2c	+	chr12	32821466	32824405	PKP2|ENST00000546498.1	-	32821466,32822466,32824044	32821529,32822631,32824405	0.750000
heart_left_ventricle_female_adult_51_years	chr14	102235451	102235465	102235451	-	High_confidence	8	9	26	1.223251	4.392747	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.961538
heart_left_ventricle_female_adult_51_years	chr12	91179462	91179526	91179462	-	High_confidence	2464	2545	8830	415.434927	7.359748	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.930578
heart_left_ventricle_female_adult_51_years	chr2	219419787	219419807	219419806	+	High_confidence	5	5	9	0.423433	2.750000	chr2	219419757	219419880	LINE|L2|L2b	-	chr2	219420044	219423820	DES|ENST00000477226.5	+	219420044,219420250,219420494,219420827,219421339,219423776	219420155,219420346,219420656,219420953,219421560,219423820	0.888889
heart_left_ventricle_female_adult_51_years	chr2	219631638	219631692	219631658	+	High_confidence	8	8	37	1.740781	4.551462	chr2	219631665	219631820	SINE|MIR|MIRc	+	chr2	219632058	219637795	SLC4A3|ENST00000416910.1	+	219632058,219632261,219632873,219633273,219633865,219634419,219635270,219635672,219636301,219636679,219637580	219632116,219632442,219633009,219633457,219633979,219634604,219635496,219635891,219636450,219636874,219637795	0.918919
heart_left_ventricle_female_adult_51_years	chr8	27977120	27977126	27977125	-	RAMPAGE_only	15	18	25	1.176203	3.253158	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.840000
heart_left_ventricle_female_adult_51_years	chr14	71002030	71002044	71002043	+	RAMPAGE_only	5	7	11	0.517529	2.846439	chr14	71001845	71002099	LTR|ERVL-MaLR|MLT1J	-	chr14	71013030	71110153	PCNX1|ENST00000554691.5	+	71013030,71019008,71023199,71026116,71026771,71028699,71033428,71033930,71036064,71045132,71046963,71047806,71050651,71051882,71055503,71073544,71076188,71088329,71089191,71101989,71103394,71105234,71108603,71109451,71109794	71013202,71019162,71023232,71026288,71026882,71028791,71033538,71034036,71036157,71045283,71047105,71047984,71050760,71052012,71055562,71073798,71076419,71088430,71089342,71102220,71103669,71105440,71109046,71109592,71110153	0.545455
heart_left_ventricle_female_adult_51_years	chr8	2035181	2035202	2035186	+	RAMPAGE_only	5	5	13	0.611626	3.238901	chr8	2035159	2035209	LINE|L2|L2a	-	chr8	2033507	2035587	AC245164.1|ENST00000517731.1	+	2033507,2035466	2033798,2035587	0.538462
heart_left_ventricle_female_adult_51_years	chr9	92536601	92536602	92536601	-	High_confidence	6	8	8	0.376385	3.000000	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.750000
heart_left_ventricle_female_adult_51_years	chr19	48868595	48868631	48868613	-	High_confidence	65	86	369	17.360757	7.018689	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	1.000000
heart_left_ventricle_female_adult_51_years	chr13	27445106	27445108	27445107	-	RAMPAGE_only	29	41	48	2.258310	5.075078	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.937500
heart_left_ventricle_female_adult_51_years	chr18	9126569	9126626	9126625	+	RAMPAGE_only	6	9	24	1.129155	4.136842	chr18	9126653	9126774	SINE|Alu|AluJo	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	1.000000
heart_left_ventricle_female_adult_51_years	chr19	20423703	20423704	20423703	-	RAMPAGE_only	7	9	11	0.517529	3.095795	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.909091
heart_left_ventricle_female_adult_51_years	chr12	90576410	90576430	90576410	+	High_confidence	5	5	16	0.752770	3.500000	chr12	90570465	90576624	LINE|L1|L1MA3	-	chr12	90576431	90611182	STRG.18945.1	+	90576431,90593568,90609487	90576581,90593811,90611182	0.875000
heart_left_ventricle_female_adult_51_years	chr7	141280485	141280518	141280488	+	High_confidence	4	4	12	0.564577	3.095795	chr7	141280292	141280651	LTR|ERVL-MaLR|THE1B	+	chr7	141280365	141480380	STRG.12620.3	+	141280365,141437607,141470535	141280569,141437745,141480380	0.916667
heart_left_ventricle_female_adult_51_years	chr8	144063550	144063555	144063550	-	High_confidence	11	13	21	0.988011	3.366091	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144053212	144063547	STRG.13882.2	-	144053212,144054560,144054811,144055028,144055787,144056146,144056384,144056617,144056947,144057207,144057447,144057855,144058009,144058238,144058495,144058772,144058979,144059598,144059861,144060652,144063303	144053393,144054735,144054913,144055189,144055939,144056259,144056523,144056755,144057118,144057320,144057713,144057923,144058148,144058404,144058691,144058896,144059079,144059790,144060085,144061257,144063547	0.857143
heart_left_ventricle_female_adult_51_years	chr17	4143196	4143215	4143199	+	High_confidence	107	108	225	10.585828	5.778813	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.960000
heart_left_ventricle_female_adult_51_years	chr1	1655466	1655475	1655474	-	RAMPAGE_only	5	7	14	0.658674	3.026987	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.714286
heart_left_ventricle_female_adult_51_years	chr2	108607146	108607147	108607146	+	High_confidence	12	14	16	0.752770	3.108459	chr2	108606979	108607192	LTR|ERVL-MaLR|MLT1A0	+	chr2	108607160	108684448	LIMS1|ENST00000410093.5	+	108607160,108659604,108670780,108672324,108672879,108675877,108676605,108677978,108680694,108683884	108607255,108659764,108670847,108672445,108673029,108676028,108676698,108678027,108680770,108684448	0.937500
heart_left_ventricle_female_adult_51_years	chr4	151687295	151687334	151687314	-	High_confidence	33	33	162	7.621796	6.498318	chr4	151687184	151687573	LINE|L2|L2b	+	chr4	151670943	151687083	GATB|ENST00000507592.5	-	151670943,151672761,151679812,151686907	151671302,151672896,151679891,151687083	0.820988
heart_left_ventricle_female_adult_51_years	chr17	76740500	76740509	76740508	+	RAMPAGE_only	5	5	11	0.517529	3.095795	chr17	76740464	76740701	SINE|MIR|MIR	+	chr17	76742190	76769840	MFSD11|ENST00000585584.5	+	76742190,76743397,76744321,76745392,76754046,76767385,76769745	76742273,76743456,76744466,76745439,76754087,76767451,76769840	0.636364
heart_left_ventricle_female_adult_51_years	chr2	206161432	206161469	206161468	+	High_confidence	3	3	15	0.705722	3.456565	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	1.000000
heart_left_ventricle_female_adult_51_years	chr10	45000474	45000504	45000503	+	High_confidence	3	3	7	0.329337	2.807355	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
heart_left_ventricle_female_adult_51_years	chr6	92181303	92181304	92181303	-	RAMPAGE_only	11	12	16	0.752770	3.506891	chr6	92181053	92181476	LTR|ERVL-MaLR|MLT1D	-	chr6	92002609	92180156	AL590814.1|ENST00000647772.1	-	92002609,92016813,92025328,92027890,92180124	92004666,92017127,92025392,92028143,92180156	0.750000
heart_left_ventricle_female_adult_51_years	chr10	6737334	6737380	6737338	+	High_confidence	3	5	25	1.176203	3.936180	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.920000
heart_left_ventricle_female_adult_51_years	chr4	169697625	169697626	169697625	+	RAMPAGE_only	6	6	8	0.376385	2.521641	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169695630	169706888	CLCN3|ENST00000515420.1	+	169695630,169697188,169697360,169703997,169706867	169695692,169697279,169697734,169704184,169706888	0.500000
heart_left_ventricle_female_adult_51_years	chr12	6493747	6493748	6493747	-	High_confidence	10	10	10	0.470481	3.121928	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6492151	6493718	MRPL51|ENST00000543959.5	-	6492151,6492861,6493673	6492467,6492972,6493718	0.800000
heart_left_ventricle_female_adult_51_years	chr5	66440504	66440560	66440525	-	High_confidence	45	45	130	6.116256	5.003783	chr5	66440146	66440632	LTR|ERVL-MaLR|MLT1F1	+	chr5	66345742	66440498	STRG.8472.2	-	66345742,66440146	66351228,66440498	0.946154
heart_left_ventricle_female_adult_51_years	chr11	128565299	128565328	128565304	+	High_confidence	17	17	109	5.128245	5.830402	chr11	128565090	128565469	LTR|ERVL-MaLR|MLT1A1	+	chr11	128565271	128574446	STRG.17962.1	+	128565271,128565820,128574424	128565391,128566456,128574446	0.743119
heart_left_ventricle_female_adult_51_years	chr12	15001808	15001813	15001810	+	High_confidence	6	11	18	0.846866	3.454822	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.888889
heart_left_ventricle_female_adult_51_years	chr11	58578102	58578133	58578132	-	High_confidence	4	4	22	1.035059	3.684184	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.909091
heart_left_ventricle_female_adult_51_years	chr3	14047196	14047210	14047205	-	High_confidence	34	39	73	3.434513	5.165602	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14039207	14047205	STRG.4997.1	-	14039207,14046812	14041628,14047205	0.945205
heart_left_ventricle_female_adult_51_years	chrX	19350008	19350105	19350008	+	RAMPAGE_only	11	11	84	3.952042	5.462092	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19355317	19359025	PDHA1|ENST00000481733.1	+	19355317,19355685,19357651,19358915	19355504,19355757,19357719,19359025	0.559524
heart_left_ventricle_female_adult_51_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	33	34	77	3.622705	4.585789	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.974026
heart_left_ventricle_female_adult_51_years	chr18	7946867	7946898	7946878	+	High_confidence	8	8	26	1.223251	4.001629	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.730769
heart_left_ventricle_female_adult_51_years	chr16	58421322	58421323	58421322	+	High_confidence	8	9	9	0.423433	3.000000	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421338	58440774	STRG.22806.6	+	58421338,58435691,58437155	58421421,58435823,58440774	0.555556
heart_left_ventricle_female_adult_51_years	chr6	138833744	138833801	138833800	-	High_confidence	7	7	43	2.023069	4.222208	chr6	138833577	138833832	SINE|Alu|AluSx	+	chr6	138820103	138833895	STRG.10971.1	-	138820103,138825094,138833474	138821427,138825579,138833895	0.906977
heart_left_ventricle_female_adult_51_years	chr9	68975842	68975846	68975842	-	High_confidence	1665	1722	3052	143.590872	6.273238	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.752294
heart_left_ventricle_female_adult_51_years	chr19	38376013	38376033	38376032	+	RAMPAGE_only	5	5	23	1.082107	4.297079	chr19	38375972	38376110	SINE|MIR|MIR	-	chr19	38374758	38383824	PSMD8|ENST00000602911.5	+	38374758,38376159,38376351,38379239,38380898,38382116,38383252	38374961,38376232,38376454,38379405,38380999,38382228,38383824	0.913043
heart_left_ventricle_female_adult_51_years	chr2	182056117	182056170	182056156	-	High_confidence	34	34	68	3.199272	5.554159	chr2	182055736	182056501	LINE|L1|L1MEi	-	chr2	182050785	182056169	STRG.4334.3	-	182050785,182052601,182055415	182051995,182052685,182056169	0.985294
heart_left_ventricle_female_adult_51_years	chr6	155282744	155282799	155282744	-	RAMPAGE_only	3	4	20	0.940962	3.391893	chr6	155282731	155283026	SINE|Alu|AluY	-	chr6	155257652	155297069	TFB1M|ENST00000468889.5	-	155257652,155260272,155285157,155296952	155257908,155260400,155285277,155297069	0.550000
heart_left_ventricle_female_adult_51_years	chr16	23141209	23141240	23141239	-	RAMPAGE_only	2	2	7	0.329337	2.807355	chr16	23140602	23141239	LINE|L2|L2	+	chr16	23061405	23149270	USP31|ENST00000219689.11	-	23061405,23072044,23073721,23079945,23082437,23084859,23085584,23087091,23087723,23090623,23102318,23105440,23106212,23106398,23108045,23148637	23069616,23072197,23073880,23080171,23082557,23084989,23085662,23087186,23087835,23090804,23102463,23105576,23106305,23106487,23108183,23149270	1.000000
heart_left_ventricle_female_adult_51_years	chr5	66440217	66440258	66440234	-	High_confidence	5	5	22	1.035059	3.916127	chr5	66440146	66440632	LTR|ERVL-MaLR|MLT1F1	+	chr5	66345742	66440498	STRG.8472.2	-	66345742,66440146	66351228,66440498	0.863636
heart_left_ventricle_female_adult_51_years	chr3	141429538	141429550	141429538	+	RAMPAGE_only	6	7	10	0.470481	2.947703	chr3	141429492	141430039	LINE|L2|L2a	-	chr3	141431722	141442722	ZBTB38|ENST00000509813.1	+	141431722,141442388	141432243,141442722	0.600000
heart_left_ventricle_female_adult_51_years	chr4	141332616	141332617	141332616	-	High_confidence	363	364	374	17.595998	5.021092	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.965241
heart_left_ventricle_female_adult_51_years	chr1	1505129	1505164	1505129	+	RAMPAGE_only	4	4	21	0.988011	3.721928	chr1	1504965	1505957	LTR|ERVK|LTR13	-	chr1	1503249	1509452	AL645728.2|ENST00000641974.1	+	1503249,1509204	1503661,1509452	0.952381
heart_left_ventricle_female_adult_51_years	chr9	109428971	109429046	109429042	-	High_confidence	349	356	981	46.154209	6.161957	chr9	109429018	109429111	SINE|MIR|MIRb	+	chr9	109375693	109429043	PTPN3|NM_001145371.1	-	109375693,109381651,109382301,109383422,109389232,109391137,109391470,109404447,109406461,109408320,109409998,109410228,109420423,109422717,109426949,109428620	109379633,109381787,109382447,109383551,109389379,109391199,109391561,109404608,109406618,109408377,109410076,109410415,109420600,109422852,109427122,109429043	0.994903
heart_left_ventricle_female_adult_51_years	chr7	112995595	112995658	112995629	-	High_confidence	218	220	813	38.250124	7.118462	chr7	112995411	112995725	LINE|L2|L2	+	chr7	112952727	112995634	STRG.12356.3	-	112952727,112956521,112973604,112977143,112980045,112986535,112995567	112954768,112956711,112973672,112977199,112980164,112986664,112995634	0.916359
heart_left_ventricle_female_adult_51_years	chr18	8376199	8376200	8376199	+	RAMPAGE_only	17	17	19	0.893914	3.576618	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8370932	8379313	PTPRM|ENST00000583153.2	+	8370932,8371759,8376045,8376461,8378264,8379166	8371006,8371810,8376200,8376597,8378414,8379313	0.578947
heart_left_ventricle_female_adult_51_years	chr12	55710313	55710357	55710313	+	High_confidence	5	6	22	1.035059	3.879664	chr12	55710078	55710380	SINE|Alu|AluSx1	+	chr12	55709962	55719670	STRG.18696.3	+	55709962,55715989,55716932,55719090,55719498	55710402,55716196,55717005,55719223,55719670	0.772727
heart_left_ventricle_female_adult_51_years	chr1	149229360	149229374	149229360	-	RAMPAGE_only	39	43	118	5.551679	5.741386	chr1	149229335	149229457	SINE|MIR|MIR3	+	chr1	149190294	149240856	STRG.1737.3	-	149190294,149197995,149198360,149201013,149240376	149190791,149198171,149198484,149201090,149240856	0.991525
heart_left_ventricle_female_adult_51_years	chr2	130182088	130182093	130182088	-	High_confidence	3	3	8	0.376385	2.500000	chr2	130182068	130182133	LINE|L2|L2a	+	chr2	130151391	130182750	SMPD4|NR_033230.2	-	130151391,130153042,130153318,130153701,130154276,130155095,130156034,130156584,130157250,130161185,130164373,130167457,130172348,130172624,130172786,130173278,130173513,130174913,130176553,130181529	130152884,130153171,130153450,130153935,130154482,130155259,130156135,130156675,130157396,130161272,130164445,130167590,130172500,130172677,130172895,130173354,130173656,130175000,130176637,130182750	1.000000
heart_left_ventricle_female_adult_51_years	chr6	17779604	17779674	17779604	-	RAMPAGE_only	2	3	16	0.752770	3.750000	chr6	17779257	17779571	SINE|Alu|AluSp	-	chr6	17759253	17794697	KIF13A|ENST00000502297.5	-	17759253,17764154,17771113,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571	17760877,17764946,17771218,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794697	1.000000
heart_left_ventricle_female_adult_51_years	chr13	113485593	113485605	113485593	-	RAMPAGE_only	39	40	87	4.093187	5.279791	chr13	113485255	113485582	LINE|RTE-X|L4_B_Mam	-	chr13	113459311	113490608	DCUN1D2|ENST00000438545.6	-	113459311,113461053,113462739,113474123,113480574,113483839,113490432	113459408,113461136,113462891,113474254,113480743,113484056,113490608	0.942529
heart_left_ventricle_female_adult_51_years	chr12	104858837	104858853	104858837	+	High_confidence	174	183	263	12.373656	5.940717	chr12	104858784	104858889	DNA|TcMar-Tigger|UCON55	+	chr12	104858838	104871007	STRG.19102.1	+	104858838,104870161	104858907,104871007	0.984791
heart_left_ventricle_female_adult_51_years	chr14	32075863	32075880	32075879	+	High_confidence	4	4	8	0.376385	3.000000	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076113	32090780	ARHGAP5|ENST00000555814.1	+	32076113,32076457,32090501	32076217,32076657,32090780	0.875000
heart_left_ventricle_female_adult_51_years	chr3	57267756	57267782	57267772	+	RAMPAGE_only	5	5	13	0.611626	3.084963	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.846154
heart_left_ventricle_female_adult_51_years	chr21	28090297	28090340	28090313	+	High_confidence	4	4	22	1.035059	3.295357	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	1.000000
heart_left_ventricle_female_adult_51_years	chr2	28165286	28165304	28165303	+	RAMPAGE_only	18	30	54	2.540599	3.841696	chr2	28165020	28165437	LINE|L2|L2b	-	chr2	27890792	28338901	BABAM2|ENST00000361704.6	+	27890792,27894532,27929831,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28310081,28338449	27890842,27894684,27929908,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28310153,28338901	0.944444
heart_left_ventricle_female_adult_51_years	chr4	185620092	185620117	185620092	-	RAMPAGE_only	4	4	14	0.658674	3.180833	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.785714
heart_left_ventricle_female_adult_51_years	chr1	202452441	202452455	202452449	-	High_confidence	7	7	18	0.846866	3.947703	chr1	202451192	202452602	Retroposon|SVA|SVA_D	-	chr1	202451699	202452531	STRG.2293.1	-	202451699	202452531	0.666667
heart_left_ventricle_female_adult_51_years	chr16	20674497	20674498	20674497	+	High_confidence	181	183	197	9.268480	5.498709	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.898477
heart_left_ventricle_female_adult_51_years	chr2	40610929	40610930	40610929	-	High_confidence	16	16	16	0.752770	4.000000	chr2	40610851	40611261	LTR|ERVL-MaLR|MSTB	-	chr2	40115249	40611053	SLC8A1|ENST00000405269.5	-	40115249,40139400,40160764,40164853,40174824,40177751,40428472,40610929	40115629,40139676,40160864,40164984,40174842,40177855,40430304,40611053	1.000000
heart_left_ventricle_female_adult_51_years	chr15	99114945	99114946	99114945	+	RAMPAGE_only	4	4	7	0.329337	2.807355	chr15	99114935	99115139	SINE|MIR|MIRb	-	chr15	99105079	99135595	SYNM|NM_015286.5	+	99105079,99113590,99126721,99129366,99132749	99106009,99113715,99126792,99131813,99135595	1.000000
heart_left_ventricle_female_adult_51_years	chr11	47351783	47351807	47351783	-	High_confidence	31	31	68	3.199272	5.535849	chr11	47351577	47351776	SINE|MIR|MIRb	-	chr11	47331396	47352702	MYBPC3|ENST00000545968.5	-	47331396,47331844,47332071,47332565,47332813,47333193,47333556,47333921,47335041,47335876,47337390,47337689,47338519,47339323,47339650,47341002,47341137,47341990,47342577,47342829,47343020,47343259,47343491,47346206,47346626,47347026,47347425,47347650,47347856,47348423,47349773,47350013,47350501,47351238,47352622	47331716,47331881,47332258,47332702,47332973,47333333,47333752,47334010,47335209,47336011,47337579,47337794,47338679,47339404,47339790,47341032,47341244,47342156,47342744,47342935,47343145,47343262,47343624,47346370,47346644,47347029,47347479,47347680,47347905,47348541,47349922,47350112,47350615,47351505,47352702	0.735294
heart_left_ventricle_female_adult_51_years	chr8	38838180	38838181	38838180	+	RAMPAGE_only	7	8	11	0.517529	3.277613	chr8	38837795	38838224	LTR?|LTR?|MamRep605	+	chr8	38839283	38853028	TACC1|ENST00000519093.5	+	38839283,38842286,38843288,38846698,38847954	38840267,38842447,38843395,38846819,38853028	1.000000
heart_left_ventricle_female_adult_51_years	chr19	47780107	47780108	47780107	+	High_confidence	32	38	47	2.211262	4.834209	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.914894
heart_left_ventricle_female_adult_51_years	chr11	14759567	14759568	14759567	+	RAMPAGE_only	11	11	15	0.705722	3.773557	chr11	14759548	14759845	SINE|Alu|AluSc	-	chr11	14644259	14872044	STRG.16742.2	+	14644259,14771936,14786436,14789105,14803943,14818182,14819135,14830697,14831639,14832721,14834981,14843826,14859042,14861204,14867505,14869460	14645053,14771987,14786685,14789242,14804050,14818393,14819209,14830880,14831777,14832833,14835095,14844026,14859246,14861366,14867758,14872044	0.666667
heart_left_ventricle_female_adult_51_years	chrX	5726324	5726325	5726324	-	High_confidence	24	24	28	1.317347	3.780395	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.964286
heart_left_ventricle_female_adult_51_years	chr16	72014418	72014419	72014418	+	High_confidence	12	12	16	0.752770	3.155639	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.750000
heart_left_ventricle_female_adult_51_years	chr11	126207607	126207609	126207607	-	High_confidence	2	4	6	0.282289	2.584963	chr11	126207561	126207848	SINE|Alu|AluSz	+	chr11	126202413	126207669	STRG.17948.3	-	126202413,126204230,126205467,126205687,126207532	126203657,126204328,126205612,126205781,126207669	1.000000
heart_left_ventricle_female_adult_51_years	chr17	31128483	31128484	31128483	+	High_confidence	30	30	40	1.881925	4.548097	chr17	31128254	31128640	LINE|L1|L1PA13	-	chr17	31128457	31169964	NF1|ENST00000489712.6	+	31128457,31155982,31159009,31163185,31169890	31128507,31156126,31159093,31163376,31169964	0.700000
heart_left_ventricle_female_adult_51_years	chr13	94119433	94119493	94119433	+	RAMPAGE_only	14	14	58	2.728791	4.881616	chr13	94119131	94119537	LINE|L2|L2a	-	chr13	94286347	94403217	GPC6|ENST00000617456.1	+	94286347,94305979,94382413,94398465,94403014	94286479,94306123,94382550,94398641,94403217	0.879310
heart_left_ventricle_female_adult_51_years	chr5	160199150	160199156	160199155	+	High_confidence	22	29	50	2.352406	4.233270	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.920000
heart_left_ventricle_female_adult_51_years	chr22	33472466	33472467	33472466	-	RAMPAGE_only	6	7	9	0.423433	2.750000	chr22	33472435	33472986	DNA|hAT-Charlie|MER20B	+	chr22	33162225	33384227	LARGE1|ENST00000608642.5	-	33162225,33304228,33316084,33337645,33381918,33384191	33166832,33304507,33316248,33337801,33382044,33384227	0.888889
heart_left_ventricle_female_adult_51_years	chr2	219425186	219425187	219425186	+	RAMPAGE_only	15	15	15	0.705722	3.773557	chr2	219424901	219425196	SINE|Alu|AluSg	-	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	1.000000
heart_left_ventricle_female_adult_51_years	chr5	178267395	178267410	178267399	-	RAMPAGE_only	4	4	14	0.658674	3.664498	chr5	178267373	178267564	SINE|MIR|MIR	-	chr5	178237619	178306934	COL23A1|ENST00000407622.2	-	178237619,178239140,178242041,178242340,178245941,178246253,178246390,178247525,178247774,178248191,178249116,178250060,178252543,178254948,178256352,178256865,178257522,178259720,178261721,178262216,178263207,178267306,178268729,178270336,178306874	178238700,178239179,178242128,178242394,178245968,178246307,178246453,178247552,178247831,178248254,178249206,178250105,178252597,178255026,178256397,178256928,178257567,178259747,178261748,178262252,178263324,178267333,178268756,178270372,178306934	1.000000
heart_left_ventricle_female_adult_51_years	chr4	102431228	102431248	102431247	-	High_confidence	5	5	15	0.705722	3.324863	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.933333
heart_left_ventricle_female_adult_51_years	chr10	103181328	103181329	103181328	-	High_confidence	13	14	15	0.705722	3.640224	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103169283	103181320	NT5C2|ENST00000467380.1	-	103169283,103174857,103181184	103169449,103174982,103181320	0.533333
heart_left_ventricle_female_adult_51_years	chr4	64278973	64279395	64279385	-	RAMPAGE_only	60	60	693	32.604349	7.173753	chr4	64279257	64279568	SINE|Alu|AluJr	-	chr4	64277701	64409398	STRG.7213.1	-	64277701,64281040,64281473,64289709,64299973,64305165,64309825,64314647,64322688,64328511,64375171,64409117	64280199,64281086,64281559,64289767,64300017,64305238,64309931,64314763,64322792,64328556,64375223,64409398	0.997114
heart_left_ventricle_female_adult_51_years	chr19	45450739	45450769	45450739	-	High_confidence	3	3	15	0.705722	3.906891	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	1.000000
heart_left_ventricle_female_adult_51_years	chr16	63618044	63618046	63618045	-	High_confidence	61	82	90	4.234331	5.466200	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.622222
heart_left_ventricle_female_adult_51_years	chr6	34762037	34762051	34762037	+	RAMPAGE_only	6	7	20	0.940962	3.426367	chr6	34762020	34762316	SINE|Alu|AluJb	+	chr6	34757911	34773532	SNRPC|ENST00000474635.1	+	34757911,34762594,34767907,34770290,34772930,34773445	34757954,34762703,34767997,34770395,34773007,34773532	0.800000
heart_left_ventricle_female_adult_51_years	chr1	217456339	217456344	217456343	-	RAMPAGE_only	4	4	8	0.376385	2.521641	chr1	217455658	217456433	LTR|ERV1|LTR1B	+	chr1	217426991	217631082	GPATCH2|ENST00000366935.7	-	217426991,217449248,217491679,217498355,217514821,217610320,217610888,217614140,217619782,217630915	217431365,217449337,217491750,217498395,217514889,217610400,217611071,217614202,217620499,217631082	0.875000
heart_left_ventricle_female_adult_51_years	chr8	53523820	53523879	53523862	-	High_confidence	8	8	48	2.258310	5.202804	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.791667
heart_left_ventricle_female_adult_51_years	chr6	6739070	6739096	6739095	-	High_confidence	3	3	13	0.611626	2.719295	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6704670	6739030	AL031123.1|ENST00000648205.1	-	6704670,6710871,6711696,6738908	6705078,6711059,6711858,6739030	0.615385
heart_left_ventricle_female_adult_51_years	chr9	68957182	68957212	68957211	-	RAMPAGE_only	2	2	7	0.329337	2.807355	chr9	68956991	68957380	LTR|ERVL-MaLR|MLT1L	-	chr9	68951640	68975859	STRG.14530.1	-	68951640,68971226,68975663	68957211,68972641,68975859	1.000000
heart_left_ventricle_female_adult_51_years	chr19	9140390	9140428	9140393	+	High_confidence	14	14	36	1.693732	4.707715	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.888889
heart_left_ventricle_female_adult_51_years	chr15	42415259	42415533	42415440	-	RAMPAGE_only	38	41	338	15.902266	5.982546	chr15	42415122	42415421	SINE|Alu|AluSq2	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	0.997041
heart_left_ventricle_female_adult_51_years	chr5	79481703	79481774	79481773	-	RAMPAGE_only	16	16	183	8.609807	5.451789	chr5	79481262	79481938	LINE|L1|L1MEc	+	chr5	79439008	79501548	STRG.8617.5	-	79439008,79447052,79450989,79456861,79501525	79439149,79447145,79451121,79457018,79501548	0.945355
heart_left_ventricle_female_adult_51_years	chr1	6820193	6820198	6820193	+	RAMPAGE_only	6	6	14	0.658674	2.653544	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.857143
heart_left_ventricle_female_adult_51_years	chr1	183639941	183639959	183639941	+	RAMPAGE_only	5	5	9	0.423433	3.169925	chr1	183639836	183640136	SINE|Alu|AluSc5	-	chr1	183636084	183928531	RGL1|ENST00000304685.8	+	183636084,183742125,183806374,183847565,183865995,183880615,183883785,183884722,183888473,183892076,183897807,183900149,183902567,183904849,183907011,183912081,183916446,183922221,183926104	183636501,183742289,183806485,183847774,183866073,183880800,183883910,183884938,183888577,183892161,183897897,183900236,183902600,183904971,183907101,183912268,183916701,183922336,183928531	0.777778
heart_left_ventricle_female_adult_51_years	chr5	14295866	14295867	14295866	+	High_confidence	7	7	9	0.423433	2.725481	chr5	14295856	14295957	LTR|LTR|MamRep1527	-	chr5	14295781	14420021	STRG.8152.3	+	14295781,14297071,14304460,14316512,14330777,14336535,14358177,14359356,14363731,14364649,14366859,14368707,14369373,14374228,14378011,14381129,14387437,14387731,14388612,14389288,14390230,14390900,14394037,14397042,14398879,14400962,14405847,14406572,14419777	14296007,14297263,14304592,14316743,14330900,14336727,14358347,14359531,14363927,14364816,14366979,14368899,14369523,14374343,14378127,14381252,14387632,14387847,14388679,14389398,14390300,14390990,14394130,14397154,14399070,14401064,14405990,14406672,14420021	1.000000
heart_left_ventricle_female_adult_51_years	chr11	57327775	57327877	57327876	-	RAMPAGE_only	4	4	22	1.035059	3.788755	chr11	57327870	57328061	LINE|L2|L2c	+	chr11	57325987	57335808	STRG.17015.1	-	57325987,57326702,57327425,57327711,57328296,57330092,57330290,57330732,57330854,57331667,57332151,57332382,57332624,57332958,57333434,57334462,57335067,57335729	57326478,57326889,57327514,57327882,57328426,57330138,57330429,57330741,57330927,57331889,57332280,57332486,57332855,57333149,57333540,57334648,57335240,57335808	1.000000
heart_left_ventricle_female_adult_51_years	chr13	37934549	37934565	37934558	+	High_confidence	4	4	15	0.705722	3.324863	chr13	37934381	37935273	LTR|ERV1|LTR1D	-	chr13	37934564	38048169	LINC02334|ENST00000617568.1	+	37934564,37997811,38013403,38029648,38043950	37935037,37997937,38013501,38029691,38048169	0.866667
heart_left_ventricle_female_adult_51_years	chr16	72073244	72073245	72073244	+	High_confidence	6	6	6	0.282289	2.584963	chr16	72072861	72073376	LTR|ERV1|LTR10B	+	chr16	72073164	72077246	STRG.22896.1	+	72073164,72073891,72075144,72076302	72073293,72074385,72075219,72077246	0.833333
heart_left_ventricle_female_adult_51_years	chr1	153967486	153967504	153967486	+	High_confidence	4	4	16	0.752770	3.323231	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.750000
heart_left_ventricle_female_adult_51_years	chr11	2375370	2375406	2375372	-	High_confidence	18	27	59	2.775839	4.462659	chr11	2375301	2375633	LINE|L2|L2b	+	chr11	2370504	2375386	STRG.16554.1	-	2370504,2375298	2373245,2375386	0.949153
heart_left_ventricle_female_adult_51_years	chr1	20028515	20028516	20028515	+	High_confidence	232	254	277	13.032330	7.026447	chr1	20028464	20028814	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.866426
heart_left_ventricle_female_adult_51_years	chr19	11507489	11507512	11507489	-	RAMPAGE_only	2	2	8	0.376385	2.750000	chr19	11507282	11507445	SINE|Alu|FRAM	-	chr19	11505957	11513168	ECSIT|ENST00000592571.1	-	11505957,11507456,11507701,11507990,11510616,11513055	11506428,11507562,11507850,11508048,11510660,11513168	1.000000
heart_left_ventricle_female_adult_51_years	chr7	150823592	150823598	150823597	-	RAMPAGE_only	10	10	19	0.893914	4.169925	chr7	150823060	150823714	LTR|ERV1|MER51D	+	chr7	150791286	150801360	TMEM176B|NM_014020.3	-	150791286,150792055,150793087,150793543,150793960,150796365,150800992	150791623,150792175,150793315,150793600,150794071,150796574,150801360	0.736842
heart_left_ventricle_female_adult_51_years	chr2	10844369	10844421	10844420	+	High_confidence	67	68	254	11.950223	5.771336	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844247	10885118	STRG.2893.1	+	10844247,10844752,10884833	10844505,10844832,10885118	0.787402
heart_left_ventricle_female_adult_51_years	chr1	39026130	39026136	39026135	+	High_confidence	6	6	11	0.517529	3.121928	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.909091
heart_left_ventricle_female_adult_51_years	chr1	20639917	20639955	20639954	+	RAMPAGE_only	6	6	39	1.834877	4.471354	chr1	20640002	20640112	LINE|L2|L2b	+	chr1	20638128	20651316	PINK1|ENST00000492302.1	+	20638128,20644489,20645559,20648504,20650433	20639992,20644672,20645723,20649231,20651316	0.974359
heart_left_ventricle_female_adult_51_years	chr6	162234780	162234817	162234816	+	High_confidence	46	48	165	7.762940	4.964152	chr6	162234836	162234947	SINE|MIR|MIR3	+	chr6	162234801	162240037	STRG.11157.1	+	162234801,162239452	162234918,162240037	0.969697
heart_left_ventricle_female_adult_51_years	chr19	12800915	12800991	12800944	-	High_confidence	20	20	138	6.492641	5.391503	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.971014
heart_left_ventricle_female_adult_51_years	chr22	35615679	35615715	35615679	-	High_confidence	13	14	44	2.070117	4.436260	chr22	35615623	35615770	SINE|MIR|MIR3	-	chr22	35606763	35615713	MB|ENST00000401702.5	-	35606763,35610883,35615573	35607443,35611106,35615713	1.000000
heart_left_ventricle_female_adult_51_years	chr2	198113524	198113538	198113524	+	RAMPAGE_only	4	4	12	0.564577	3.022055	chr2	198113329	198113594	LINE|L2|L2b	-	chr2	198083748	198149884	PLCL1|ENST00000437704.3	+	198083748,198088857,198101284,198103826,198146779	198086232,198089061,198101360,198103936,198149884	1.000000
heart_left_ventricle_female_adult_51_years	chr18	31227589	31227643	31227615	-	High_confidence	5	5	30	1.411444	4.706891	chr18	31226911	31227662	LINE|L2|L2	+	chr18	31129235	31227620	STRG.24767.2	-	31129235,31130792,31131593,31132567,31133890,31134571,31139747,31140041,31141998,31143656,31145610,31148497,31154773,31156042,31157370,31159444,31227437	31130711,31130838,31131842,31132689,31134130,31134784,31139890,31140301,31142184,31143791,31145777,31148642,31154929,31156162,31157573,31159529,31227620	0.700000
heart_left_ventricle_female_adult_51_years	chr8	18076302	18076305	18076304	-	High_confidence	22	31	42	1.976021	4.462815	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18066766	18076305	ASAH1|ENST00000637872.1	-	18066766,18069791,18071299,18075540,18076176	18067298,18069878,18071390,18075587,18076305	0.833333
heart_left_ventricle_female_adult_51_years	chr14	93183517	93183560	93183517	-	RAMPAGE_only	4	5	27	1.270299	3.363713	chr14	93183223	93184271	LTR|Gypsy|MamGyp-int	-	chr14	93182195	93184904	MOAP1|NM_022151.4	-	93182195,93184558,93184809	93184362,93184713,93184904	0.962963
heart_left_ventricle_female_adult_51_years	chr9	39809856	39809865	39809856	-	High_confidence	15	16	62	2.916984	4.890329	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803490	39810013	STRG.14343.2	-	39803490,39809485,39809730	39803859,39809615,39810013	0.870968
heart_left_ventricle_female_adult_51_years	chr21	28090385	28090409	28090390	+	High_confidence	4	4	17	0.799818	3.146286	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	1.000000
heart_left_ventricle_female_adult_51_years	chr12	643625	643636	643635	-	High_confidence	30	30	103	4.845957	5.007209	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.970874
heart_left_ventricle_female_adult_51_years	chrX	48590029	48590053	48590029	+	High_confidence	4	4	12	0.564577	3.418296	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48590041	48598827	WDR13|ENST00000470124.1	+	48590041,48597957,48598716	48590287,48598037,48598827	0.583333
heart_left_ventricle_female_adult_51_years	chr8	18063191	18063216	18063197	-	High_confidence	15	15	57	2.681743	4.859487	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
heart_left_ventricle_female_adult_51_years	chr2	96638016	96638060	96638016	-	High_confidence	10	10	30	1.411444	4.323231	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.933333
heart_left_ventricle_female_adult_51_years	chr8	39083026	39083066	39083057	+	RAMPAGE_only	3	4	15	0.705722	3.324863	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.733333
heart_left_ventricle_female_adult_51_years	chr16	8842153	8842179	8842153	+	High_confidence	10	10	22	1.035059	3.584184	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.909091
heart_left_ventricle_female_adult_51_years	chr20	38985938	38985988	38985938	+	High_confidence	4	4	17	0.799818	3.969816	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38985969	39038636	STRG.27064.2	+	38985969,38988812,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38986012,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39038636	1.000000
heart_left_ventricle_female_adult_51_years	chr12	19036964	19036965	19036964	+	High_confidence	4	4	7	0.329337	2.584963	chr12	19036914	19037352	LTR|ERV1|LOR1b	-	chr12	19037008	19048312	STRG.18322.1	+	19037008,19045404	19037100,19048312	0.571429
heart_left_ventricle_female_adult_51_years	chr3	49468648	49468670	49468669	+	High_confidence	3	3	8	0.376385	2.750000	chr3	49468531	49468836	SINE|Alu|AluSx1	-	chr3	49468702	49535618	DAG1|NM_001177643.2	+	49468702,49510418,49530796	49469055,49510819,49535618	0.875000
heart_left_ventricle_female_adult_51_years	chr19	51350328	51350375	51350356	-	RAMPAGE_only	7	8	33	1.552588	3.799801	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.969697
heart_left_ventricle_female_adult_51_years	chr18	35136534	35136535	35136534	+	RAMPAGE_only	11	11	13	0.611626	3.418296	chr18	35136349	35136693	LINE|L2|L2c	-	chr18	35041649	35143470	MAPRE2|ENST00000589699.1	+	35041649,35070194,35097445,35101945,35126947,35132031,35140294	35041766,35070322,35097591,35102159,35127087,35132190,35143470	0.846154
heart_left_ventricle_female_adult_51_years	chr2	37020017	37020018	37020017	-	RAMPAGE_only	52	57	73	3.434513	5.309173	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	37008167	37013995	HEATR5B|ENST00000471051.1	-	37008167,37013840	37008848,37013995	0.643836
heart_left_ventricle_female_adult_51_years	chr5	66440355	66440389	66440355	-	High_confidence	92	103	418	19.666115	5.640362	chr5	66440146	66440632	LTR|ERVL-MaLR|MLT1F1	+	chr5	66345742	66440498	STRG.8472.2	-	66345742,66440146	66351228,66440498	0.834928
heart_left_ventricle_female_adult_51_years	chr7	101217578	101217599	101217578	-	High_confidence	4	4	13	0.611626	3.188722	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.923077
heart_left_ventricle_female_adult_51_years	chr4	69525742	69525770	69525769	-	High_confidence	5	6	20	0.940962	3.146439	chr4	69525719	69525768	LINE|L2|L2c	-	chr4	69480164	69526009	STRG.7205.3	-	69480164,69485207,69486608,69489438,69493692,69525686	69480910,69485427,69486696,69489570,69493841,69526009	1.000000
heart_left_ventricle_female_adult_51_years	chr8	17935185	17935230	17935185	+	RAMPAGE_only	3	3	19	0.893914	3.932138	chr8	17934728	17935264	LTR|Gypsy?|LTR85a	-	chr8	17937175	17939016	PCM1|ENST00000518985.1	+	17937175,17938838	17937379,17939016	0.894737
heart_left_ventricle_female_adult_51_years	chr3	9986881	9986916	9986915	+	High_confidence	3	3	7	0.329337	2.521641	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986910	10005244	EMC3-AS1|ENST00000326237.3	+	9986910,10002716	9987264,10005244	0.714286
heart_left_ventricle_female_adult_51_years	chr6	34219370	34219371	34219370	+	High_confidence	12	13	14	0.658674	3.467720	chr6	34219234	34219371	SINE|Alu|AluSx	+	chr6	34219438	34220066	CYCSP55|ENST00000399027.3	+	34219438,34220022	34219705,34220066	0.714286
heart_left_ventricle_female_adult_51_years	chr3	99962025	99962073	99962054	+	High_confidence	24	27	106	4.987101	4.418815	chr3	99961963	99962273	LINE|L2|L2c	-	chr3	99962036	100178599	STRG.5783.3	+	99962036,100146972,100160429,100162302,100166334,100167737,100171838,100172315,100176326,100178304	99962158,100147061,100160501,100162432,100166394,100167840,100171899,100172403,100176415,100178599	0.990566
heart_left_ventricle_female_adult_51_years	chr11	64773470	64773491	64773470	-	RAMPAGE_only	3	4	8	0.376385	2.521641	chr11	64773369	64773442	LINE|RTE-BovB|MamRTE1	-	chr11	64769541	64771607	SF1|ENST00000496969.1	-	64769541,64769963,64770255,64771463	64769609,64770053,64770408,64771607	0.875000
heart_left_ventricle_female_adult_51_years	chr7	29122309	29122347	29122314	+	High_confidence	33	35	93	4.375475	5.586814	chr7	29122133	29122608	LTR|ERV1|MER31A	-	chr7	29122339	29514667	AC004593.3|ENST00000644824.1	+	29122339,29126328,29128013,29145853,29146848,29354624,29367931,29393678,29398372,29400542,29480278,29495951,29499866,29504743,29507227,29509300,29512563	29122642,29126626,29128167,29146745,29146960,29354663,29367987,29393710,29398486,29400828,29480356,29496036,29500040,29504821,29507365,29509406,29514667	0.989247
heart_left_ventricle_female_adult_51_years	chr1	11991986	11992002	11991986	+	RAMPAGE_only	5	5	12	0.564577	2.845351	chr1	11991954	11992033	SINE|MIR|MIR	+	chr1	11981991	12013508	STRG.238.2	+	11981991,11982522,11989164,11992554,11996155,11997296,11998769,11998987,12001400,12001768,12001981,12003991,12004508,12004824,12005710,12006537,12007052,12009591,12011495	11982114,11982590,11989343,11992690,11996318,11997421,11998878,11999095,12001554,12001836,12002103,12004118,12004613,12004927,12005931,12006693,12007249,12009726,12013508	0.666667
heart_left_ventricle_female_adult_51_years	chr2	182035660	182035711	182035674	+	RAMPAGE_only	3	3	17	0.799818	3.750000	chr2	182035463	182035860	LTR|ERVL-MaLR|MSTA	+	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.705882
heart_left_ventricle_female_adult_51_years	chr21	29077464	29077470	29077464	+	High_confidence	2	2	7	0.329337	2.521641	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077470	29175889	MAP3K7CL|NM_020152.3	+	29077470,29080551,29085071,29085812,29091500,29091667,29092438,29149188,29159940,29174711	29077713,29080708,29085143,29085917,29091576,29091761,29092581,29149250,29160056,29175889	0.714286
heart_left_ventricle_female_adult_51_years	chr1	205790219	205790656	205790335	-	RAMPAGE_only	43	44	298	14.020341	6.281125	chr1	205790260	205790370	LINE|L2|L2a	+	chr1	205789093	205801488	SLC41A1|ENST00000468057.5	-	205789093,205794869,205795343,205796923,205797903,205798668,205798956,205799758,205800952,205801320	205791718,205795018,205795478,205797003,205798051,205798815,205799101,205799830,205801060,205801488	1.000000
heart_left_ventricle_female_adult_51_years	chr3	29280865	29280899	29280865	-	High_confidence	3	3	9	0.423433	3.000000	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.777778
heart_left_ventricle_female_adult_51_years	chr2	167210779	167210895	167210894	+	RAMPAGE_only	24	24	122	5.739871	4.609041	chr2	167210892	167210985	DNA|hAT-Ac|OldhAT1	-	chr2	167187282	167259753	XIRP2|NM_001199144.1	+	167187282,167210734,167218165,167239854,167240663,167241776,167242568,167254031,167257856	167187531,167210895,167218300,167239965,167240736,167241910,167251947,167254165,167259753	0.991803
heart_left_ventricle_female_adult_51_years	chr6	2949583	2949584	2949583	-	RAMPAGE_only	7	7	8	0.376385	2.521641	chr6	2949217	2950248	LINE|L2|L2a	+	chr6	2948169	2955882	SERPINB6|ENST00000644697.1	-	2948169,2948913,2953043,2954591	2948699,2949069,2953186,2955882	0.750000
heart_left_ventricle_female_adult_51_years	chr9	104763732	104763756	104763732	+	High_confidence	6	6	21	0.988011	3.681881	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	0.904762
heart_left_ventricle_female_adult_51_years	chr12	55626261	55626268	55626267	-	High_confidence	125	125	202	9.503721	5.389463	chr12	55626113	55626696	LTR|ERVL-MaLR|MLT1F2	-	chr12	55434915	55626291	STRG.18677.2	-	55434915,55476548,55493090,55626189	55435131,55476601,55493158,55626291	0.871287
heart_left_ventricle_female_adult_51_years	chr12	27579238	27579245	27579238	+	RAMPAGE_only	4	4	8	0.376385	2.500000	chr12	27579150	27579292	SINE|MIR|MIR3	+	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.750000
heart_left_ventricle_female_adult_51_years	chr1	11984765	11984766	11984765	+	RAMPAGE_only	219	230	290	13.643956	6.559927	chr1	11984495	11985279	LTR|ERVL|MER21A	+	chr1	11981991	12013508	STRG.238.2	+	11981991,11982522,11989164,11992554,11996155,11997296,11998769,11998987,12001400,12001768,12001981,12003991,12004508,12004824,12005710,12006537,12007052,12009591,12011495	11982114,11982590,11989343,11992690,11996318,11997421,11998878,11999095,12001554,12001836,12002103,12004118,12004613,12004927,12005931,12006693,12007249,12009726,12013508	0.851724
heart_left_ventricle_female_adult_51_years	chr8	85378112	85378113	85378112	-	High_confidence	62	62	62	2.916984	4.345348	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	1.000000
heart_left_ventricle_female_adult_51_years	chr1	226364201	226364202	226364201	-	High_confidence	6	6	7	0.329337	2.584963	chr1	226364119	226364211	SINE|MIR|MIRb	-	chr1	226361318	226364372	PARP1|ENST00000463968.5	-	226361318,226361968,226363098,226363942	226361541,226362083,226363160,226364372	0.714286
heart_left_ventricle_female_adult_51_years	chr1	35538533	35538565	35538533	-	RAMPAGE_only	21	21	79	3.716802	5.145226	chr1	35538308	35538616	SINE|Alu|AluSx	+	chr1	35451634	35554987	KIAA0319L|ENST00000440579.5	-	35451634,35453556,35454361,35456012,35460304,35462620,35466607,35470862,35474804,35478965,35506611,35554349,35554899	35451776,35453689,35454485,35456241,35460437,35462713,35466695,35470960,35474906,35479212,35507135,35554519,35554987	1.000000
heart_left_ventricle_female_adult_51_years	chr8	18082561	18082593	18082561	-	High_confidence	2	2	8	0.376385	2.750000	chr8	18082289	18082821	LTR|ERV1|MER90a	+	chr8	18062354	18082603	ASAH1|ENST00000636823.1	-	18062354,18063184,18064456,18067219,18069791,18071299,18075540,18082526	18062423,18063230,18064531,18067298,18069878,18071390,18075587,18082603	1.000000
heart_left_ventricle_female_adult_51_years	chr8	32927927	32927928	32927927	+	RAMPAGE_only	5	7	7	0.329337	2.521641	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	1.000000
heart_left_ventricle_female_adult_51_years	chr4	2867814	2867851	2867835	+	High_confidence	33	34	135	6.351497	5.745246	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.992593
heart_left_ventricle_female_adult_51_years	chr1	20028387	20028426	20028407	+	High_confidence	14	17	47	2.211262	4.924969	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028429	20091158	PLA2G5|ENST00000465698.5	+	20028429,20059631,20068872,20084820,20086082,20088824,20089788,20090567	20028709,20059692,20069032,20084870,20086227,20088943,20089895,20091158	0.893617
heart_left_ventricle_female_adult_51_years	chr16	11774341	11774360	11774341	-	High_confidence	6	6	10	0.470481	3.169925	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	0.800000
heart_left_ventricle_female_adult_51_years	chr12	19037007	19037031	19037030	+	High_confidence	48	65	86	4.046139	5.161298	chr12	19036914	19037352	LTR|ERV1|LOR1b	-	chr12	19037008	19048312	STRG.18322.1	+	19037008,19045404	19037100,19048312	0.744186
heart_left_ventricle_female_adult_51_years	chr1	100173337	100173357	100173356	-	RAMPAGE_only	11	12	23	1.082107	4.142915	chr1	100173269	100174301	LINE|L1|L1M5	+	chr1	100148852	100178215	LRRC39|ENST00000370137.5	-	100148852,100152384,100155050,100156171,100158230,100159258,100160465,100168403,100173330,100178134	100149097,100152524,100155203,100156317,100158367,100159415,100160571,100168594,100173370,100178215	0.956522
heart_left_ventricle_female_adult_51_years	chr1	184974884	184974911	184974884	-	High_confidence	2	2	9	0.423433	2.500000	chr1	184974824	184974995	DNA|hAT-Charlie|MER5A	+	chr1	184791024	184974586	FAM129A|NM_052966.3	-	184791024,184798078,184803584,184805945,184808073,184818637,184823166,184823637,184831846,184884632,184890107,184894074,184899178,184974301	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184823742,184831962,184884800,184890222,184894206,184899309,184974586	0.777778
heart_left_ventricle_female_adult_51_years	chr11	64242588	64242620	64242588	+	High_confidence	12	14	47	2.211262	4.882045	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.936170
heart_left_ventricle_female_adult_51_years	chr5	79689354	79689372	79689354	+	High_confidence	19	19	39	1.834877	4.855790	chr5	79689238	79689475	SINE|MIR|MIRb	+	chr5	79689835	79800226	CMYA5|NM_153610.4	+	79689835,79728914,79743826,79745221,79747090,79752675,79758752,79761810,79763061,79788970,79790969,79793436,79799369	79690056,79739403,79743922,79745455,79747113,79752794,79758902,79761957,79763209,79789104,79791069,79793610,79800226	0.512821
heart_left_ventricle_female_adult_51_years	chr14	23426063	23426064	23426063	+	High_confidence	10	10	10	0.470481	2.646439	chr14	23426091	23426216	SINE|MIR|MIRc	+	chr14	23426775	23428617	STRG.20525.1	+	23426775,23427239,23427584,23428499	23426864,23427307,23427894,23428617	1.000000
heart_left_ventricle_female_adult_51_years	chr3	183630129	183630136	183630135	+	RAMPAGE_only	5	5	10	0.470481	3.121928	chr3	183630102	183630275	LTR|ERV1?|LTR103b_Mam	+	chr3	183635567	183679478	KLHL24|ENST00000242810.10	+	183635567,183643479,183650295,183663457,183664920,183671033,183672295,183679085	183635793,183643542,183651276,183663642,183665039,183671222,183672484,183679478	0.800000
heart_left_ventricle_female_adult_51_years	chr2	227534913	227534927	227534913	+	RAMPAGE_only	3	3	9	0.423433	3.169925	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.888889
heart_left_ventricle_female_adult_51_years	chr18	28159170	28159191	28159170	-	High_confidence	8	8	19	0.893914	3.947703	chr18	28159142	28159517	LTR|ERVL|LTR79	+	chr18	28011917	28159297	CDH2|ENST00000413878.1	-	28011917,28013682,28147672,28159148	28011992,28013909,28147784,28159297	0.684211
heart_left_ventricle_female_adult_51_years	chr2	55267584	55267623	55267584	-	High_confidence	4	4	13	0.611626	3.180833	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.923077
heart_left_ventricle_female_adult_51_years	chr3	9973632	9973640	9973634	-	RAMPAGE_only	3	5	13	0.611626	3.251629	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.846154
heart_left_ventricle_female_adult_51_years	chr15	84836120	84836132	84836120	+	RAMPAGE_only	16	19	31	1.458492	3.885828	chr15	84835841	84837447	LINE|L2|L2a	-	chr15	84816679	84873482	ALPK3|NM_020778.4	+	84816679,84823329,84827483,84838979,84839701,84856391,84859242,84859775,84860036,84862634,84863551,84864441,84867316,84868110	84817595,84823368,84827605,84839097,84840932,84858555,84859390,84859903,84860072,84862915,84863640,84864665,84867365,84873482	1.000000
heart_left_ventricle_female_adult_51_years	chr9	127184222	127184228	127184222	-	RAMPAGE_only	2	2	7	0.329337	2.521641	chr9	127184045	127184341	SINE|Alu|AluJb	+	chr9	127178737	127180789	STRG.15090.1	-	127178737,127179833	127179194,127180789	1.000000
heart_left_ventricle_female_adult_51_years	chr2	27305759	27305811	27305810	+	RAMPAGE_only	4	4	13	0.611626	3.392747	chr2	27305831	27306026	SINE|MIR|MIRb	+	chr2	27282461	27307439	TRIM54|ENST00000296098.4	+	27282461,27298566,27299244,27299529,27304958,27305583,27306079,27306212,27306455,27306886	27282899,27298739,27299416,27299655,27305054,27305817,27306102,27306337,27306542,27307439	1.000000
heart_left_ventricle_female_adult_51_years	chr6	79631242	79631329	79631328	+	High_confidence	12	15	52	2.446502	5.203856	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.942308
heart_left_ventricle_female_adult_51_years	chr3	98733184	98733222	98733184	+	High_confidence	3	3	11	0.517529	2.913977	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	1.000000
heart_left_ventricle_female_adult_51_years	chr3	192566953	192567062	192567000	+	High_confidence	8	9	56	2.634695	5.353909	chr3	192566991	192567105	SINE|MIR|MIRc	-	chr3	192566955	192604900	STRG.6558.2	+	192566955,192567514,192604438	192567171,192567624,192604900	0.500000
heart_left_ventricle_female_adult_51_years	chr12	101824037	101824059	101824058	-	RAMPAGE_only	5	5	14	0.658674	3.378783	chr12	101824004	101824405	LTR|ERVL-MaLR|MLT1K	+	chr12	101767909	101830818	GNPTAB|ENST00000549940.5	-	101767909,101770020,101770405,101770995,101780151,101780556,101786011,101788547,101789937,101796676,101830558	101768160,101770191,101770585,101771157,101780286,101780621,101786217,101788589,101790057,101796762,101830818	0.928571
heart_left_ventricle_female_adult_51_years	chr16	72014335	72014342	72014335	+	High_confidence	3	3	7	0.329337	2.584963	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.857143
heart_left_ventricle_female_adult_51_years	chr6	12103381	12103387	12103381	+	High_confidence	5	5	13	0.611626	3.238901	chr6	12103250	12103431	SINE|MIR|MIRb	-	chr6	12103285	12164998	STRG.9700.3	+	12103285,12119889,12129758,12130766,12135790,12161438,12163282	12103470,12125870,12129892,12130942,12135892,12161929,12164998	0.923077
heart_left_ventricle_female_adult_51_years	chr8	93795071	93795114	93795113	+	High_confidence	11	15	32	1.505540	4.349200	chr8	93794953	93795181	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.968750
heart_left_ventricle_female_adult_51_years	chr15	92678210	92678222	92678210	-	RAMPAGE_only	8	8	41	1.928973	4.297471	chr15	92678051	92678466	LTR|ERVL-MaLR|MSTC	-	chr15	92619182	92668043	FAM174B|ENST00000557480.5	-	92619182,92630213,92667897	92619459,92630345,92668043	0.780488
heart_left_ventricle_female_adult_51_years	chr15	92591540	92591566	92591565	+	High_confidence	24	26	108	5.081197	5.853478	chr15	92591487	92591582	LINE|RTE-X|L4_A_Mam	+	chr15	92591549	92600574	STRG.21884.1	+	92591549,92600337	92591614,92600574	0.712963
heart_left_ventricle_female_adult_51_years	chr4	158841812	158841813	158841812	+	High_confidence	12	12	18	0.846866	3.572469	chr4	158841566	158842041	LTR|ERVL|LTR75	+	chr4	158841800	158880430	STRG.7875.3	+	158841800,158851320,158859056,158859577,158861341,158861606,158868101,158870312,158879565	158841952,158851450,158859258,158859666,158861488,158861776,158869428,158870469,158880430	0.777778
heart_left_ventricle_female_adult_51_years	chr1	201384037	201384038	201384037	-	High_confidence	8	8	12	0.564577	3.251629	chr1	201383891	201384270	LINE|L2|L2c	+	chr1	201380874	201383830	STRG.2268.23	-	201380874,201382251,201382652,201383073,201383316,201383706	201381893,201382326,201382739,201383211,201383389,201383830	0.500000
heart_left_ventricle_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	262	265	268	12.608897	5.036191	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.977612
heart_left_ventricle_female_adult_51_years	chr1	205512274	205512317	205512316	+	RAMPAGE_only	8	8	29	1.364396	4.513153	chr1	205512088	205512401	LINE|L2|L2	-	chr1	205504801	205527825	CDK18|ENST00000419301.1	+	205504801,205523146,205523482,205524231,205525138,205526064,205526366,205526774,205527793	205504878,205523297,205523715,205524357,205525195,205526179,205526461,205526837,205527825	0.965517
heart_left_ventricle_female_adult_51_years	chr12	55710203	55710274	55710273	+	High_confidence	5	5	21	0.988011	3.471354	chr12	55710078	55710380	SINE|Alu|AluSx1	+	chr12	55709962	55719670	STRG.18696.3	+	55709962,55715989,55716932,55719090,55719498	55710402,55716196,55717005,55719223,55719670	0.857143
heart_left_ventricle_female_adult_51_years	chr17	67920092	67920099	67920095	+	High_confidence	3	4	10	0.470481	2.725481	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	0.900000
heart_left_ventricle_female_adult_51_years	chr10	72176833	72176874	72176854	-	High_confidence	12	12	33	1.552588	4.373551	chr10	72176827	72177143	LINE|L2|L2c	+	chr10	72096521	72176868	STRG.15889.5	-	72096521,72128081,72133056,72152868,72161537,72176814	72097450,72128167,72133181,72152988,72161674,72176868	0.909091
heart_left_ventricle_female_adult_51_years	chr6	16277903	16277948	16277904	+	High_confidence	14	26	107	5.034149	5.983342	chr6	16277565	16277912	LINE|L2|L2b	-	chr6	16277563	16295544	STRG.9726.2	+	16277563,16278783,16285792,16290461,16295005	16277977,16278890,16285835,16290621,16295544	0.934579
heart_left_ventricle_female_adult_51_years	chr2	229808253	229808305	229808270	-	RAMPAGE_only	3	3	16	0.752770	3.773557	chr2	229807972	229808231	SINE|Alu|AluSx3	-	chr2	229802250	229806149	TRIP12|ENST00000487178.1	-	229802250,229803570,229803998,229805729	229802459,229803689,229804227,229806149	0.625000
heart_left_ventricle_female_adult_51_years	chr11	18706988	18707011	18706988	-	High_confidence	3	3	14	0.658674	3.378783	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18705417	18706129	IGSF22|ENST00000510673.1	-	18705417,18705816	18705617,18706129	0.642857
heart_left_ventricle_female_adult_51_years	chr8	144106368	144106423	144106368	+	RAMPAGE_only	3	3	20	0.940962	3.681881	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144104511	144107611	MAF1|ENST00000534585.5	+	144104511,144105639,144105868,144106075,144106342,144106834,144107087	144104858,144105766,144105997,144106241,144106674,144106963,144107611	0.950000
heart_left_ventricle_female_adult_51_years	chr3	139344537	139344573	139344547	+	High_confidence	13	13	37	1.740781	4.387660	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	1.000000
heart_left_ventricle_female_adult_51_years	chr8	42542153	42542175	42542159	+	High_confidence	2	2	9	0.423433	2.500000	chr8	42542201	42542309	SINE|MIR|MIRb	+	chr8	42541795	42552997	SMIM19|NM_001135675.1	+	42541795,42546468,42548655,42552543	42542155,42546606,42548780,42552997	0.888889
heart_left_ventricle_female_adult_51_years	chr1	231847665	231847707	231847665	-	High_confidence	292	295	528	24.841409	6.560114	chr1	231847541	231847935	LINE|L2|L2a	+	chr1	231809874	231847758	STRG.2662.2	-	231809874,231822229,231847518	231814291,231822834,231847758	0.920455
heart_left_ventricle_female_adult_51_years	chr3	12514054	12514063	12514059	+	RAMPAGE_only	7	7	20	0.940962	3.576618	chr3	12513979	12514484	LINE|L2|L2b	-	chr3	12529778	12539288	TSEN2|ENST00000455118.5	+	12529778,12531569,12532661,12538801	12529873,12531659,12532773,12539288	0.550000
heart_left_ventricle_female_adult_51_years	chr3	14047155	14047156	14047155	-	High_confidence	25	25	28	1.317347	4.162295	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14039207	14047205	STRG.4997.1	-	14039207,14046812	14041628,14047205	0.964286
heart_left_ventricle_female_adult_51_years	chrX	53546444	53546462	53546454	-	RAMPAGE_only	3	3	10	0.470481	3.121928	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.900000
heart_left_ventricle_female_adult_51_years	chr2	217909725	217909748	217909736	-	RAMPAGE_only	8	8	34	1.599636	4.390320	chr2	217909603	217909688	DNA|hAT-Charlie|MER5A	-	chr2	217848883	217905461	TNS1|ENST00000413554.5	-	217848883,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217905295	217849087,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217905461	0.911765
heart_left_ventricle_female_adult_51_years	chr7	112956586	112956600	112956599	-	RAMPAGE_only	2	2	7	0.329337	2.584963	chr7	112956597	112956681	LTR|ERVL-MaLR|MLT1M	+	chr7	112952727	112995634	STRG.12356.3	-	112952727,112956521,112973604,112977143,112980045,112986535,112995567	112954768,112956711,112973672,112977199,112980164,112986664,112995634	0.857143
heart_left_ventricle_female_adult_51_years	chr8	93794808	93794879	93794823	+	High_confidence	90	98	303	14.255581	6.535451	chr8	93794713	93794824	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.996700
heart_left_ventricle_female_adult_51_years	chr8	118995437	118995458	118995457	+	High_confidence	3	3	11	0.517529	3.459432	chr8	118995452	118995608	SINE|MIR|MIR3	-	chr8	118995451	119103867	COLEC10|ENST00000521788.1	+	118995451,119009440,119089679,119091148,119102347,119102525,119103799	118995573,119009553,119089751,119091220,119102401,119102694,119103867	0.818182
heart_left_ventricle_female_adult_51_years	chr6	6738955	6738964	6738963	-	High_confidence	3	4	9	0.423433	2.947703	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6704670	6739030	AL031123.1|ENST00000648205.1	-	6704670,6710871,6711696,6738908	6705078,6711059,6711858,6739030	0.555556
heart_left_ventricle_female_adult_51_years	chr2	109173553	109173554	109173553	+	RAMPAGE_only	6	6	6	0.282289	2.584963	chr2	109173517	109173626	DNA|hAT-Charlie|MER58B	+	chr2	109129540	109504636	SH3RF3|NM_001099289.2	+	109129540,109347673,109371585,109398589,109419538,109432500,109436892,109449169,109490604,109501502	109130113,109347949,109371681,109398943,109419642,109432671,109437146,109449489,109490936,109504636	1.000000
heart_left_ventricle_female_adult_51_years	chr8	116730241	116730254	116730249	-	RAMPAGE_only	38	39	79	3.716802	5.393450	chr8	116730180	116730513	DNA|hAT-Charlie|MER1B	+	chr8	116648805	116755784	EIF3H|ENST00000518949.5	-	116648805,116655855,116657214,116658812,116697052,116755665	116648926,116656005,116657314,116658980,116697237,116755784	0.784810
heart_left_ventricle_female_adult_51_years	chr5	139364707	139364729	139364707	+	RAMPAGE_only	2	2	8	0.376385	2.750000	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	1.000000
heart_left_ventricle_female_adult_51_years	chr2	165274803	165274823	165274803	+	RAMPAGE_only	2	2	10	0.470481	2.646439	chr2	165274765	165275023	LINE|RTE-BovB|MamRTE1	-	chr2	165293830	165392310	SCN2A|NM_021007.2	+	165293830,165295772,165297016,165307847,165308665,165309351,165310322,165312024,165313619,165313901,165315470,165323155,165326851,165331329,165342295,165344554,165354191,165365142,165367216,165370125,165373224,165374684,165377596,165380591,165381092,165386745,165388628	165294135,165296090,165297135,165307937,165308794,165309443,165310595,165312088,165313761,165314108,165315758,165323500,165326984,165331568,165342469,165344911,165354671,165365263,165367371,165370299,165373347,165374966,165377650,165380729,165381197,165387016,165392310	1.000000
heart_left_ventricle_female_adult_51_years	chr4	88315673	88315689	88315688	+	RAMPAGE_only	3	3	9	0.423433	2.750000	chr4	88315585	88316433	DNA|TcMar-Tigger|MER6	+	chr4	88284941	88331421	AC107067.1|ENST00000500009.2	+	88284941,88311795,88316685,88319330,88330180	88285061,88311871,88316807,88319425,88331421	0.555556
heart_left_ventricle_female_adult_51_years	chrX	122422803	122422804	122422803	+	High_confidence	50	51	59	2.775839	5.231200	chrX	122422686	122426743	LINE|L1|L1PBa	-	chrX	122421922	122479732	STRG.29120.1	+	122421922,122459141,122459459,122477001	122422061,122459265,122459580,122479732	0.881356
heart_left_ventricle_female_adult_51_years	chr12	20365005	20365012	20365011	+	RAMPAGE_only	8	8	16	0.752770	3.030639	chr12	20364713	20365128	LINE|L2|L2a	-	chr12	20369244	20684107	PDE3A|NM_000921.4	+	20369244,20556659,20613442,20616229,20621295,20629907,20633692,20634901,20637099,20639845,20646489,20646750,20648687,20650444,20653946,20680029	20370244,20556710,20613700,20616384,20621411,20630127,20633778,20635056,20637237,20639957,20646603,20646950,20648891,20650600,20654205,20684107	1.000000
heart_left_ventricle_female_adult_51_years	chr3	128801965	128801983	128801965	+	RAMPAGE_only	13	16	44	2.070117	4.880180	chr3	128801647	128801974	LINE|L1|L1MEg	+	chr3	128726192	128814353	RAB7A|ENST00000482525.5	+	128726192,128795359,128797942,128806371,128807542,128813326	128726359,128795420,128798069,128806449,128807671,128814353	0.590909
heart_left_ventricle_female_adult_51_years	chr6	48111177	48111207	48111177	-	RAMPAGE_only	7	7	37	1.740781	4.760067	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47878027	48068689	PTCHD4|NM_001013732.3	-	47878027,48008633,48068229	47879936,48009114,48068689	0.540541
heart_left_ventricle_female_adult_51_years	chr17	68520135	68520136	68520135	+	RAMPAGE_only	24	26	27	1.270299	4.546594	chr17	68519963	68520291	LTR|ERVL-MaLR|MLT1I	-	chr17	68515399	68551319	PRKAR1A|ENST00000588188.6	+	68515399,68522755,68523724,68524015,68524911,68525753,68527839,68528869,68529919,68551083	68515576,68522926,68523816,68524077,68524958,68525912,68527900,68528991,68530001,68551319	0.962963
heart_left_ventricle_female_adult_51_years	chr8	129752862	129752906	129752905	-	High_confidence	4	4	11	0.517529	2.721928	chr8	129752564	129757710	LINE|L1|L1MA2	+	chr8	129748195	129752886	GSDMC|ENST00000522273.5	-	129748195,129749451,129749989,129750430,129751541,129751861,129752105,129752697	129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752886	0.909091
heart_left_ventricle_female_adult_51_years	chr15	85349296	85349335	85349296	+	High_confidence	24	24	157	7.386555	6.160230	chr15	85349240	85349519	SINE|Alu|AluJr4	-	chr15	85349265	85669828	STRG.21832.3	+	85349265,85352026,85361266,85365334,85365898,85369051,85485709,85521427,85533583,85543771,85575130,85578929,85585701,85639373,85645817,85655416,85658536,85662387,85664562,85669721	85349385,85352123,85361420,85365406,85365954,85369130,85485753,85521575,85533880,85543955,85575329,85582107,85585823,85639449,85645954,85655787,85658590,85662453,85664755,85669828	0.643312
heart_left_ventricle_female_adult_51_years	chr3	131804585	131804700	131804603	-	High_confidence	110	114	288	13.549859	6.290367	chr3	131804531	131804997	LTR|ERVL-MaLR|MLT1H	+	chr3	131534736	131804689	STRG.6063.1	-	131534736,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131804557	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131804689	0.881944
heart_left_ventricle_female_adult_51_years	chr13	43053941	43054008	43053971	+	RAMPAGE_only	151	154	548	25.782371	5.324248	chr13	43052716	43054750	LINE|L1|L1PB1	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.981752
heart_left_ventricle_female_adult_51_years	chr1	61869691	61869708	61869706	+	RAMPAGE_only	3	4	8	0.376385	2.521641	chr1	61869626	61870561	LTR|ERV1|LTR1D	-	chr1	61805509	62163504	PATJ|ENST00000484937.5	+	61805509,61808473,61822944,61827421,61833653,61856029,61861550,61864237,61875242,61884236,61899582,61901281,61908371,61914586,61927729,61990167,62017855,62037976,62050965,62079449,62084514,62108436,62114052,62116531,62117131,62121185,62123020,62127971,62128840,62148283,62153357,62160907,62162882	61805524,61808530,61823079,61827583,61833785,61856239,61861667,61864633,61875366,61884408,61899654,61901459,61908482,61914664,61927829,61990364,62017947,62038049,62051058,62079567,62084648,62108520,62114246,62116679,62117218,62121295,62123058,62128094,62128945,62148390,62153481,62161389,62163504	0.875000
heart_left_ventricle_female_adult_51_years	chr16	86727346	86727347	86727346	+	High_confidence	6	6	9	0.423433	2.503258	chr16	86727319	86727414	SINE|Alu|AluSx3	+	chr16	86727346	86738593	LINC02188|ENST00000649094.1	+	86727346,86727867,86734825,86737409	86727536,86727967,86734909,86738593	0.777778
heart_left_ventricle_female_adult_51_years	chr11	65181215	65181223	65181222	+	High_confidence	8	8	15	0.705722	3.373557	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	1.000000
heart_left_ventricle_female_adult_51_years	chrX	15607186	15607208	15607186	-	High_confidence	6	6	15	0.705722	3.664498	chrX	15606866	15607460	LTR|ERV1|LTR10C	+	chrX	15561035	15607186	STRG.28409.1	-	15561035,15564023,15566252,15567725,15570294,15571623,15572200,15573366,15575665,15578088,15581220,15585474,15587752,15589343,15591712,15592228,15594844,15600725,15607136	15562013,15564218,15566369,15567826,15570353,15571796,15572323,15573465,15575810,15578315,15581390,15585572,15587858,15589456,15591856,15592322,15595003,15601014,15607186	0.866667
heart_left_ventricle_female_adult_51_years	chr10	65570509	65570536	65570519	+	High_confidence	3	3	10	0.470481	2.947703	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.800000
heart_left_ventricle_female_adult_51_years	chr5	997313	997328	997318	-	High_confidence	64	68	157	7.386555	5.804434	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.980892
heart_left_ventricle_female_adult_51_years	chr9	38949733	38949734	38949733	+	High_confidence	38	38	49	2.305358	4.353308	chr9	38949604	38949969	LTR|ERV1|LTR38B	+	chr9	38949726	38998503	STRG.14314.1	+	38949726,38950328,38964939,38997942	38949849,38950512,38965093,38998503	0.959184
heart_left_ventricle_female_adult_51_years	chr15	50766700	50766720	50766700	-	High_confidence	3	3	9	0.423433	2.947703	chr15	50766525	50766821	LINE|L2|L2a	+	chr15	50702265	50765808	SPPL2A|ENST00000261854.9	-	50702265,50719939,50722123,50725220,50726320,50730964,50732602,50736100,50736643,50739679,50747494,50748112,50748687,50749635,50765467	50707874,50720100,50722201,50725323,50726377,50731039,50732684,50736202,50736740,50739828,50747628,50748202,50748870,50749746,50765808	1.000000
heart_left_ventricle_female_adult_51_years	chr13	37934743	37934767	37934749	+	High_confidence	21	21	96	4.516620	5.616495	chr13	37934381	37935273	LTR|ERV1|LTR1D	-	chr13	37934729	38048169	STRG.19617.2	+	37934729,37997811,38029648,38043950	37935037,37997937,38029691,38048169	0.822917
heart_left_ventricle_female_adult_51_years	chr10	73645916	73646228	73645999	-	RAMPAGE_only	24	24	228	10.726972	6.030016	chr10	73645821	73646123	SINE|Alu|AluY	-	chr10	73644880	73650011	STRG.15912.4	-	73644880,73649810	73648879,73650011	1.000000
heart_left_ventricle_female_adult_51_years	chr17	49646471	49646486	49646471	-	High_confidence	5	6	16	0.752770	3.202820	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	1.000000
heart_left_ventricle_female_adult_51_years	chr3	115110180	115110207	115110206	-	RAMPAGE_only	64	67	151	7.104267	5.534005	chr3	115109927	115110224	SINE|Alu|AluSx	+	chr3	114338652	115144919	STRG.5898.5	-	114338652,114350273,114380216,114389004,114500351,114693527,114801100,114900303,114974365,115071218,115110086,115144812	114339426,114351878,114380404,114389105,114500391,114693575,114801174,114900342,114974416,115071414,115110200,115144919	0.973510
heart_left_ventricle_female_adult_51_years	chr1	33021373	33021395	33021389	-	RAMPAGE_only	2	2	9	0.423433	2.750000	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.888889
heart_left_ventricle_female_adult_51_years	chr8	99893443	99893474	99893444	-	High_confidence	18	24	58	2.728791	4.533623	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	1.000000
heart_left_ventricle_female_adult_51_years	chr6	4346761	4346807	4346800	-	High_confidence	2	2	10	0.470481	2.947703	chr6	4346798	4346936	SINE|MIR|MIRb	-	chr6	4341750	4347151	STRG.9648.3	-	4341750,4345722,4346632	4344849,4345806,4347151	0.900000
heart_left_ventricle_female_adult_51_years	chr1	202452336	202452356	202452355	-	High_confidence	3	3	10	0.470481	2.947703	chr1	202451192	202452602	Retroposon|SVA|SVA_D	-	chr1	202451699	202452531	STRG.2293.1	-	202451699	202452531	0.500000
heart_left_ventricle_female_adult_51_years	chr16	66408519	66408539	66408519	+	High_confidence	6	6	13	0.611626	3.700440	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.846154
heart_left_ventricle_female_adult_51_years	chr4	185878690	185878704	185878690	-	RAMPAGE_only	3	3	10	0.470481	3.121928	chr4	185878408	185878937	LINE|L2|L2	+	chr4	185585443	185812256	SORBS2|NM_001145670.1	-	185585443,185589678,185593885,185611779,185614830,185615044,185618584,185620062,185626831,185630548,185646667,185649466,185652661,185657423,185662103,185678422,185678795,185684753,185690561,185775226,185811663	185587688,185589785,185593935,185611980,185614959,185615159,185618631,185620151,185627019,185630598,185646782,185649656,185652728,185657596,185662242,185678547,185678822,185684842,185690611,185775366,185812256	0.500000
heart_left_ventricle_female_adult_51_years	chr17	61952981	61953006	61952981	-	RAMPAGE_only	4	5	12	0.564577	2.663533	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.916667
heart_left_ventricle_female_adult_51_years	chr6	43025285	43025308	43025291	+	High_confidence	3	3	14	0.658674	3.521641	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.857143
heart_left_ventricle_female_adult_51_years	chr9	38650188	38650291	38650221	+	High_confidence	357	386	1513	71.183810	5.810078	chr9	38650217	38650807	LINE|L2|L2b	-	chr9	38650256	38662717	AL591543.1|ENST00000642095.1	+	38650256,38658688	38650376,38662717	0.980833
heart_left_ventricle_female_adult_51_years	chr12	46470198	46470199	46470198	+	RAMPAGE_only	4	4	6	0.282289	2.584963	chr12	46469980	46470323	LTR|ERVL-MaLR|MLT1B	+	chr12	46537501	46652550	AC008035.1|ENST00000607353.1	+	46537501,46571255,46652389	46537631,46571412,46652550	0.666667
heart_left_ventricle_female_adult_51_years	chr18	28171773	28171774	28171773	-	RAMPAGE_only	22	22	26	1.223251	4.315824	chr18	28171751	28171822	SINE|MIR|MIR3	-	chr18	27950962	28177446	CDH2|NM_001792.4	-	27950962,27963356,27982943,27984999,27985527,27988523,27990096,27992654,27993499,28002996,28005848,28009716,28011845,28013682,28147672,28176962	27952359,27963521,27983083,27985233,27985761,27988666,27990350,27992840,27993637,28003169,28005993,28009872,28011992,28013909,28147784,28177446	1.000000
heart_left_ventricle_female_adult_51_years	chr11	112176365	112176373	112176365	+	High_confidence	66	68	182	8.562758	5.664613	chr11	112176309	112176508	LINE|L2|L2c	-	chr11	112176365	112218929	BCO2|NM_001256397.1	+	112176365,112179277,112193473,112193878,112194652,112199698,112200612,112202022,112213723,112214761,112216219,112217760	112176458,112179482,112193697,112193994,112194755,112199827,112200773,112202190,112213861,112214926,112216330,112218929	0.846154
heart_left_ventricle_female_adult_51_years	chr21	28048446	28048447	28048446	+	High_confidence	49	51	56	2.634695	4.014894	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	1.000000
heart_left_ventricle_female_adult_51_years	chr1	1655410	1655411	1655410	-	RAMPAGE_only	25	27	34	1.599636	4.801970	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.558824
heart_left_ventricle_female_adult_51_years	chr6	118651563	118651602	118651592	-	High_confidence	4	4	17	0.799818	3.734522	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	1.000000
heart_left_ventricle_female_adult_51_years	chr2	159428345	159428359	159428358	-	RAMPAGE_only	3	4	12	0.564577	3.027169	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159400598	159419867	BAZ2B|ENST00000482501.5	-	159400598,159404848,159405021,159412334,159419779	159400664,159404910,159405114,159412545,159419867	0.583333
heart_left_ventricle_female_adult_51_years	chr16	87381459	87381483	87381469	-	RAMPAGE_only	6	6	16	0.752770	3.640224	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87329335	87383748	STRG.23032.1	-	87329335,87333885,87335303,87336154,87342876,87343597,87347173,87358410,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87358497,87360366,87383748	0.875000
heart_left_ventricle_female_adult_51_years	chr3	156547617	156547634	156547617	-	RAMPAGE_only	17	18	66	3.105176	3.750828	chr3	156547519	156547912	LINE|RTE-X|L4_C_Mam	+	chr3	156543061	156548997	SSR3|ENST00000464138.1	-	156543061,156544307,156548804	156543269,156544439,156548997	0.787879
heart_left_ventricle_female_adult_51_years	chr6	34301604	34301607	34301606	-	RAMPAGE_only	6	13	19	0.893914	3.614369	chr6	34301277	34301774	LTR|ERVL-MaLR|MLT1H	+	chr6	34279678	34299113	STRG.10078.2	-	34279678,34293450,34295640,34299013	34288931,34293535,34295685,34299113	0.736842
heart_left_ventricle_female_adult_51_years	chr16	84139269	84139284	84139283	-	High_confidence	6	6	25	1.176203	3.813661	chr16	84139153	84139637	LTR|ERVL-MaLR|MLT1D	+	chr16	84130327	84139248	STRG.22987.4	-	84130327,84131101,84135543,84139222	84130431,84131327,84135605,84139248	0.600000
heart_left_ventricle_female_adult_51_years	chr10	122127024	122127025	122127024	+	High_confidence	18	18	20	0.940962	3.821928	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.950000
heart_left_ventricle_female_adult_51_years	chr1	1505692	1505693	1505692	+	RAMPAGE_only	8	8	11	0.517529	2.845351	chr1	1504965	1505957	LTR|ERVK|LTR13	-	chr1	1503249	1509452	AL645728.2|ENST00000641974.1	+	1503249,1509204	1503661,1509452	1.000000
heart_left_ventricle_female_adult_51_years	chr3	6507764	6507781	6507780	+	RAMPAGE_only	4	4	8	0.376385	2.807355	chr3	6507654	6507944	SINE|Alu|AluYi6	-	chr3	6490478	6736129	AC069277.1|ENST00000433639.1	+	6490478,6717568,6724449,6732270,6735661	6490672,6717667,6724546,6732495,6736129	0.750000
heart_left_ventricle_female_adult_51_years	chr3	33864065	33864091	33864081	+	RAMPAGE_only	2	2	10	0.470481	2.521928	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	1.000000
heart_left_ventricle_female_adult_51_years	chrX	136167004	136167033	136167004	+	High_confidence	8	9	25	1.176203	3.639080	chrX	136166859	136167051	SINE|MIR|MIR	-	chrX	136167003	136208575	FHL1|ENST00000452016.5	+	136167003,136169906,136206406,136207015,136207791,136208454	136167077,136169980,136206588,136207190,136207961,136208575	1.000000
heart_left_ventricle_female_adult_51_years	chr12	94996905	94996906	94996905	-	High_confidence	7	7	7	0.329337	2.521641	chr12	94996903	94997043	SINE|MIR|MIR3	+	chr12	94971331	94997447	NDUFA12|ENST00000550187.5	-	94971331,94994169,94997307	94971620,94994257,94997447	1.000000
heart_left_ventricle_female_adult_51_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	53	53	53	2.493551	4.545448	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
heart_left_ventricle_female_adult_51_years	chr20	37298760	37298761	37298760	+	RAMPAGE_only	8	8	8	0.376385	2.500000	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
heart_left_ventricle_female_adult_51_years	chr19	41982043	41982104	41982103	-	RAMPAGE_only	4	4	20	0.940962	3.576618	chr19	41982026	41982072	LINE|CR1|L3	-	chr19	41966581	41993467	ATP1A3|NM_001256213.1	-	41966581,41967248,41967661,41968784,41969434,41970184,41970387,41975628,41976415,41977935,41978150,41978605,41981501,41981721,41981907,41984917,41985305,41985863,41986115,41987935,41988317,41988475,41993392	41966965,41967340,41967763,41968915,41969580,41970308,41970542,41975797,41976566,41978072,41978326,41978798,41981636,41981831,41982106,41985186,41985423,41985998,41986229,41988139,41988377,41988562,41993467	0.950000
heart_left_ventricle_female_adult_51_years	chr4	114364914	114364967	114364914	-	High_confidence	20	20	83	3.904994	4.378553	chr4	114364772	114365325	LTR|ERVL-MaLR|MLT1E3	-	chr4	114334838	114364957	STRG.7559.1	-	114334838,114335128,114364807	114335026,114335244,114364957	0.939759
heart_left_ventricle_female_adult_51_years	chr3	47637077	47637078	47637077	-	RAMPAGE_only	47	49	49	2.305358	4.061380	chr3	47637061	47637193	SINE|Alu|FLAM_A	-	chr3	46857871	46882165	STRG.5305.4	-	46857871,46858230,46858383,46859474,46860675,46860959,46863261,46866389,46882073	46858101,46858272,46858461,46859648,46860825,46860987,46863396,46866600,46882165	0.938776
heart_left_ventricle_female_adult_51_years	chrX	53585017	53585145	53585027	-	RAMPAGE_only	7	7	67	3.152224	4.943307	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.940299
heart_left_ventricle_female_adult_51_years	chr3	52615423	52615448	52615423	-	High_confidence	2	2	10	0.470481	2.725481	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.900000
heart_left_ventricle_female_adult_51_years	chr20	3795740	3795772	3795750	+	High_confidence	12	13	54	2.540599	4.614746	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
heart_left_ventricle_female_adult_51_years	chr8	53524046	53524086	53524085	-	High_confidence	13	14	31	1.458492	4.548394	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.967742
heart_left_ventricle_female_adult_51_years	chr15	76576972	76577011	76577010	-	High_confidence	7	7	35	1.646684	4.593429	chr15	76576480	76577164	LINE|L1|L1MA3	+	chr15	76471261	76576985	SCAPER|ENST00000569784.1	-	76471261,76504858,76567269,76574157,76576858	76471335,76504974,76567405,76574284,76576985	0.600000
heart_left_ventricle_female_adult_51_years	chr9	20658312	20658349	20658312	+	High_confidence	16	16	58	2.728791	4.258759	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.758621
heart_left_ventricle_female_adult_51_years	chr17	8310240	8310272	8310240	+	High_confidence	2	2	8	0.376385	3.000000	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	1.000000
heart_left_ventricle_female_adult_51_years	chrX	11351736	11351743	11351736	-	High_confidence	5	5	12	0.564577	2.913977	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11137543	11351720	STRG.28375.3	-	11137543,11142232,11143979,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11351385	11139530,11142313,11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11351720	0.833333
heart_left_ventricle_female_adult_51_years	chr5	41456605	41456622	41456608	-	RAMPAGE_only	62	63	135	6.351497	4.573530	chr5	41456571	41456939	LTR|ERVL-MaLR|MLT1A0	+	chr5	41306953	41510601	PLCXD3|ENST00000377801.7	-	41306953,41381825,41510423	41313770,41382534,41510601	0.985185
heart_left_ventricle_female_adult_51_years	chr8	144063497	144063498	144063497	-	High_confidence	9	9	11	0.517529	3.121928	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144053212	144063547	STRG.13882.2	-	144053212,144054560,144054811,144055028,144055787,144056146,144056384,144056617,144056947,144057207,144057447,144057855,144058009,144058238,144058495,144058772,144058979,144059598,144059861,144060652,144063303	144053393,144054735,144054913,144055189,144055939,144056259,144056523,144056755,144057118,144057320,144057713,144057923,144058148,144058404,144058691,144058896,144059079,144059790,144060085,144061257,144063547	0.818182
heart_left_ventricle_female_adult_51_years	chr9	39810023	39810034	39810033	-	High_confidence	139	139	287	13.502811	6.044508	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803490	39810013	STRG.14343.2	-	39803490,39809485,39809730	39803859,39809615,39810013	0.930314
heart_left_ventricle_female_adult_51_years	chr3	197913277	197913296	197913295	-	High_confidence	6	7	10	0.470481	2.947703	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.900000
heart_left_ventricle_female_adult_51_years	chr12	112506707	112506752	112506707	+	RAMPAGE_only	8	8	19	0.893914	3.892407	chr12	112506599	112506946	LTR|ERVL-MaLR|MLT1H	-	chr12	112418913	112509913	PTPN11|ENST00000351677.6	+	112418913,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486474,112488442,112489023,112502143,112504694,112505824	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504796,112509913	1.000000
heart_left_ventricle_female_adult_51_years	chr7	139731085	139731086	139731085	-	RAMPAGE_only	5	5	7	0.329337	2.807355	chr7	139730703	139731118	LTR|ERVL-MaLR|MLT1C	+	chr7	139561569	139740347	STRG.12613.3	-	139561569,139575127,139583816,139596716,139600416,139604080,139613201,139614285,139620400,139626600,139628952,139631164,139631601,139715931,139740041	139573397,139575288,139584064,139596998,139600596,139604223,139613323,139614412,139620563,139626785,139629039,139631284,139631725,139717015,139740347	1.000000
heart_left_ventricle_female_adult_51_years	chr21	29193459	29193460	29193459	+	High_confidence	91	95	120	5.645775	4.319032	chr21	29193019	29193674	LTR|ERV1|MER50B	+	chr21	29193473	29346044	STRG.27454.3	+	29193473,29321220,29326058,29329486,29342398	29194260,29321514,29327393,29329693,29346044	0.991667
heart_left_ventricle_female_adult_51_years	chr5	31422354	31422359	31422354	-	High_confidence	3	3	9	0.423433	2.500000	chr5	31422347	31422540	DNA|hAT-Charlie|MER58A	+	chr5	31401411	31423321	DROSHA|ENST00000511778.5	-	31401411,31405676,31406852,31409055,31409249,31410745,31421271,31422786	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31423321	0.777778
heart_left_ventricle_female_adult_51_years	chr10	92826843	92826851	92826843	+	High_confidence	3	4	9	0.423433	3.000000	chr10	92826510	92827023	LINE|L2|L2a	-	chr10	92826830	93059494	EXOC6|NM_001013848.3	+	92826830,92834712,92893348,92894793,92894929,92899598,92909426,92915757,92919981,92928338,92934143,92934309,92935813,92940726,92948273,92952272,92954629,92955579,92974052,92997473,93014193,93056923,93058222	92826944,92834824,92893520,92894841,92895020,92899644,92909631,92915913,92920050,92928422,92934190,92934430,92935885,92940824,92948379,92952382,92954741,92955714,92974232,92997615,93014267,93057036,93059494	0.777778
heart_left_ventricle_female_adult_51_years	chr15	33194708	33194715	33194708	-	High_confidence	3	3	8	0.376385	2.750000	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	1.000000
heart_left_ventricle_female_adult_51_years	chr6	141403304	141403410	141403371	+	High_confidence	32	34	142	6.680833	5.536511	chr6	141403283	141405210	LTR|ERV1|LOR1-int	+	chr6	141403189	141404724	STRG.10976.1	+	141403189,141403569	141403489,141404724	0.852113
heart_left_ventricle_female_adult_51_years	chr7	123553338	123553339	123553338	-	RAMPAGE_only	11	11	15	0.705722	3.807355	chr7	123553169	123553535	LTR|ERVL-MaLR|THE1B	-	chr7	123541095	123557455	NDUFA5|ENST00000378795.8	-	123541095,123545610,123550469,123557403	123542220,123545676,123550586,123557455	0.933333
heart_left_ventricle_female_adult_51_years	chr12	9965305	9965321	9965320	+	RAMPAGE_only	5	6	13	0.611626	3.251629	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.846154
heart_left_ventricle_female_adult_51_years	chr22	50576040	50576078	50576060	-	High_confidence	6	7	20	0.940962	3.721612	chr22	50576043	50576136	LINE|RTE-BovB|MamRTE1	-	chr22	50572874	50576064	CPT1B|ENST00000423069.1	-	50572874,50573519,50573807,50574334,50574492,50576034	50573060,50573715,50573921,50574419,50574600,50576064	0.900000
heart_left_ventricle_female_adult_51_years	chr12	46243278	46243292	46243278	-	RAMPAGE_only	5	6	13	0.611626	3.238901	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	1.000000
heart_left_ventricle_female_adult_51_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	11	11	11	0.517529	2.663533	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
heart_left_ventricle_female_adult_51_years	chr1	114401399	114401430	114401399	-	RAMPAGE_only	3	3	7	0.329337	2.521641	chr1	114401323	114401351	SINE|MIR|MIR	-	chr1	114397607	114399609	TRIM33|ENST00000478032.1	-	114397607,114399456	114397990,114399609	0.714286
heart_left_ventricle_female_adult_51_years	chr1	155058772	155058785	155058784	+	High_confidence	8	10	15	0.705722	3.506891	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.866667
heart_left_ventricle_female_adult_51_years	chr16	5003069	5003072	5003069	+	High_confidence	10	10	21	0.988011	3.721612	chr16	5003026	5003140	SINE|MIR|MIR	-	chr16	5003079	5019153	STRG.22232.2	+	5003079,5005913,5007351,5008420,5011094,5014858	5003573,5006048,5007486,5008648,5011273,5019153	0.904762
heart_left_ventricle_female_adult_51_years	chr8	30812428	30812454	30812453	-	High_confidence	3	3	18	0.846866	3.572469	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.944444
heart_left_ventricle_female_adult_51_years	chr6	42902794	42902795	42902794	-	High_confidence	4	4	7	0.329337	2.584963	chr6	42902632	42903629	LTR|ERVK|LTR5B	-	chr6	42893477	42902979	STRG.10187.1	-	42893477,42901283,42902524	42894755,42901328,42902979	0.857143
heart_left_ventricle_female_adult_51_years	chr7	7689204	7689239	7689215	+	High_confidence	154	155	701	32.980734	6.874679	chr7	7689061	7689544	LTR|ERVL-MaLR|MLT1L	+	chr7	7689196	7722148	STRG.11345.12	+	7689196,7720912	7689460,7722148	0.764622
heart_left_ventricle_female_adult_51_years	chr5	176395298	176395328	176395327	-	RAMPAGE_only	5	6	12	0.564577	3.459432	chr5	176395154	176395342	LINE|L2|L2c	+	chr5	176392454	176416569	CLTB|NM_001834.3	-	176392454,176397606,176397929,176410256,176416176	176392945,176397718,176398047,176410303,176416569	0.916667
heart_left_ventricle_female_adult_51_years	chr4	47831339	47831341	47831339	+	High_confidence	198	237	300	14.114437	7.089925	chr4	47831064	47831545	LINE|RTE-BovB|MamRTE1	+	chr4	47831344	47896848	LOC101927179|NR_125880.1	+	47831344,47875176,47896541	47831508,47875331,47896848	0.640000
heart_left_ventricle_female_adult_51_years	chr14	44912628	44912629	44912628	-	High_confidence	10	10	14	0.658674	3.378783	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.928571
heart_left_ventricle_female_adult_51_years	chr16	4825288	4825329	4825288	-	High_confidence	5	5	33	1.552588	4.750000	chr16	4824858	4825510	LINE|L2|L2a	+	chr16	4817663	4825320	STRG.22228.7	-	4817663,4821379,4821546,4822874,4823820,4824740	4817697,4821453,4821597,4822931,4823907,4825320	0.969697
heart_left_ventricle_female_adult_51_years	chrX	155719045	155719097	155719045	-	RAMPAGE_only	31	31	75	3.528609	5.478613	chrX	155718901	155722240	LINE|L1|L1M1	+	chrX	155489010	155612961	TMLHE|NM_018196.3	-	155489010,155492356,155506897,155511672,155513985,155524455,155545095,155612791	155491666,155492495,155507134,155511792,155514265,155524632,155545277,155612961	0.893333
heart_left_ventricle_female_adult_51_years	chrX	46907902	46907930	46907902	-	RAMPAGE_only	8	8	19	0.893914	3.536887	chrX	46907356	46907892	LTR|ERVL|MER68	-	chrX	46887416	46899704	LINC01545|NR_046101.1	-	46887416,46890292,46894523,46899603	46887692,46890379,46894581,46899704	0.842105
heart_left_ventricle_female_adult_51_years	chr16	58421227	58421292	58421227	+	High_confidence	7	7	38	1.787829	4.859641	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421338	58440774	STRG.22806.6	+	58421338,58435691,58437155	58421421,58435823,58440774	0.552632
heart_left_ventricle_female_adult_51_years	chr3	186854954	186855034	186854991	+	RAMPAGE_only	10	10	54	2.540599	3.645858	chr3	186854936	186855143	SINE|MIR|MIRc	-	chr3	186842703	186858463	ADIPOQ|ENST00000444204.2	+	186842703,186845556,186853050,186854183	186842749,186845607,186853272,186858463	1.000000
heart_left_ventricle_female_adult_51_years	chr2	3533905	3533935	3533934	-	High_confidence	91	95	239	11.244501	5.842705	chr2	3533849	3534784	LTR|ERV1|LTR27E	+	chr2	3531983	3533782	AC108488.1|ENST00000439547.5	-	3531983,3533107,3533710	3532310,3533190,3533782	0.949791
heart_left_ventricle_female_adult_51_years	chr10	57025647	57025648	57025647	+	High_confidence	25	26	35	1.646684	4.514718	chr10	57025620	57026209	DNA|hAT-Charlie|Charlie10	+	chr10	57025653	57033903	STRG.15765.1	+	57025653,57031391	57025693,57033903	0.542857
heart_left_ventricle_female_adult_51_years	chr10	114182206	114182235	114182206	+	High_confidence	12	12	43	2.023069	4.880180	chr10	114182000	114182250	LINE|CR1|L3	+	chr10	114182215	114203176	STRG.16334.1	+	114182215,114187825,114190960,114199172,114201409,114202237,114203071	114182367,114188156,114191019,114199317,114201515,114202298,114203176	0.953488
heart_left_ventricle_female_adult_51_years	chr1	147173225	147173250	147173249	+	High_confidence	7	7	21	0.988011	3.787144	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.714286
heart_left_ventricle_female_adult_51_years	chr8	144063424	144063458	144063457	-	High_confidence	13	13	65	3.058128	5.445160	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144053212	144063547	STRG.13882.2	-	144053212,144054560,144054811,144055028,144055787,144056146,144056384,144056617,144056947,144057207,144057447,144057855,144058009,144058238,144058495,144058772,144058979,144059598,144059861,144060652,144063303	144053393,144054735,144054913,144055189,144055939,144056259,144056523,144056755,144057118,144057320,144057713,144057923,144058148,144058404,144058691,144058896,144059079,144059790,144060085,144061257,144063547	0.769231
heart_left_ventricle_female_adult_51_years	chr16	3263780	3263823	3263822	+	High_confidence	4	4	15	0.705722	2.950212	chr16	3263871	3263932	SINE|MIR|MIRc	+	chr16	3263810	3265563	STRG.22159.1	+	3263810	3265563	0.800000
heart_left_ventricle_female_adult_51_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	5	5	7	0.329337	2.584963	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100738442	100913524	ARHGAP42|ENST00000534060.5	+	100738442,100770342,100795104,100816714,100859553,100913451	100738498,100770438,100795166,100816856,100859625,100913524	0.571429
heart_left_ventricle_female_adult_51_years	chr6	34762176	34762177	34762176	+	RAMPAGE_only	53	57	71	3.340417	4.255322	chr6	34762020	34762316	SINE|Alu|AluJb	+	chr6	34757911	34773532	SNRPC|ENST00000474635.1	+	34757911,34762594,34767907,34770290,34772930,34773445	34757954,34762703,34767997,34770395,34773007,34773532	0.915493
heart_left_ventricle_female_adult_51_years	chr12	49013477	49013493	49013477	-	RAMPAGE_only	16	21	45	2.117166	4.454766	chr12	49013243	49013543	SINE|Alu|AluJb	-	chr12	49003879	49018743	PRKAG1|ENST00000551121.5	-	49003879,49004506,49004963,49005119,49005305,49005461,49005742,49013061,49018731	49003922,49004633,49005018,49005165,49005364,49005543,49005881,49013110,49018743	0.822222
heart_left_ventricle_female_adult_51_years	chr8	53523963	53523997	53523963	-	High_confidence	59	62	108	5.081197	5.739810	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53517639	53523931	STRG.13216.6	-	53517639,53523328	53521379,53523931	0.888889
heart_left_ventricle_female_adult_51_years	chr10	95312932	95313238	95313128	-	RAMPAGE_only	28	29	605	28.464114	5.464993	chr10	95313103	95313210	DNA|hAT-Tip100|UCON132b	+	chr10	95311772	95339327	SORBS1|ENST00000649911.1	-	95311772,95318319,95321962,95339132	95315126,95318432,95322153,95339327	0.996694
heart_left_ventricle_female_adult_51_years	chr8	56559496	56559497	56559496	-	High_confidence	11	11	14	0.658674	3.664498	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.571429
heart_left_ventricle_female_adult_51_years	chr17	47067498	47067518	47067498	-	High_confidence	191	202	765	35.991814	6.103949	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.865359
heart_left_ventricle_female_adult_51_years	chr2	173224235	173224489	173224235	+	RAMPAGE_only	23	24	157	7.386555	4.954836	chr2	173223967	173224276	LINE|L2|L2a	-	chr2	173075841	173227146	MAP3K20|ENST00000338983.7	+	173075841,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173221149	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173227146	0.993631
heart_left_ventricle_female_adult_51_years	chr2	228378498	228378499	228378498	+	RAMPAGE_only	4	6	6	0.282289	2.584963	chr2	228377948	228378523	LTR|ERVL-MaLR|MLT1E3	+	chr2	228430166	228502344	STRG.4724.1	+	228430166,228501946	228430202,228502344	0.833333
heart_left_ventricle_female_adult_51_years	chr6	42903071	42903072	42903071	-	High_confidence	29	31	31	1.458492	4.185230	chr6	42902632	42903629	LTR|ERVK|LTR5B	-	chr6	42893477	42902979	STRG.10187.1	-	42893477,42901283,42902524	42894755,42901328,42902979	0.935484
heart_left_ventricle_female_adult_51_years	chr7	80594424	80594508	80594507	+	RAMPAGE_only	76	77	589	27.711345	6.222806	chr7	80594543	80594710	LINE|RTE-X|L4_C_Mam	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.733447
heart_left_ventricle_female_adult_51_years	chr8	143281669	143281687	143281686	-	High_confidence	20	21	54	2.540599	4.964581	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281250	MINCR|ENST00000519852.5	-	143280827,143281092	143280997,143281250	0.537037
heart_left_ventricle_female_adult_51_years	chr1	120609356	120609364	120609363	-	RAMPAGE_only	5	5	14	0.658674	2.985228	chr1	120609331	120609453	SINE|MIR|MIR3	+	chr1	120472655	120665423	STRG.1576.1	-	120472655,120475227,120489810,120491581,120491934,120493157,120494233,120495029,120497181,120501109,120501927,120503599,120504381,120505710,120509484,120511665,120512469,120513765,120514824,120516823,120518529,120519217,120520233,120523893,120530295,120531877,120536310,120538322,120538570,120541891,120543016,120543946,120544266,120545280,120548288,120548640,120548972,120550144,120573071,120578705,120579070,120620354,120641607,120646872,120665062	120473978,120475299,120489860,120491628,120492073,120493301,120494460,120495146,120497421,120501234,120502117,120503719,120504513,120505962,120509670,120511818,120512693,120513817,120515060,120517352,120518649,120519410,120520669,120524126,120530384,120532089,120536402,120538404,120538735,120542086,120543196,120544084,120544380,120545439,120548501,120548733,120549092,120550276,120573189,120578881,120579194,120620465,120641759,120646928,120665423	1.000000
heart_left_ventricle_female_adult_51_years	chr2	186607926	186607961	186607926	+	High_confidence	60	60	316	14.867207	6.558285	chr2	186607713	186608293	LTR|ERVL?|LTR87	-	chr2	186607896	186680897	STRG.4361.2	+	186607896,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186608168,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186680897	0.977848
heart_left_ventricle_female_adult_51_years	chr19	3062922	3062983	3062922	-	High_confidence	121	137	588	27.664296	6.132963	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.986395
heart_left_ventricle_female_adult_51_years	chr9	101385007	101385008	101385007	-	High_confidence	10	12	12	0.564577	2.918296	chr9	101384858	101386000	LTR|ERVK|MER11A	-	chr9	101360416	101385005	BAAT|NM_001701.3	-	101360416,101368119,101370938,101384854	101363015,101368322,101371463,101385005	0.916667
heart_left_ventricle_female_adult_51_years	chr8	22417512	22417546	22417531	+	RAMPAGE_only	3	3	18	0.846866	3.836592	chr8	22417490	22417611	SINE|Alu|FLAM_C	-	chr8	22367536	22422736	SLC39A14|NM_001135153.1	+	22367536,22404695,22408309,22412036,22414779,22415768,22416072,22417650,22419551	22367737,22404980,22408496,22412206,22414902,22415957,22416280,22417835,22422736	1.000000
heart_left_ventricle_female_adult_51_years	chr22	33867683	33867697	33867683	-	RAMPAGE_only	3	3	7	0.329337	2.521641	chr22	33867663	33867821	SINE|MIR|MIRb	+	chr22	33650631	33873387	LARGE1|ENST00000423375.1	-	33650631,33761370,33856739,33873107	33650668,33761558,33856802,33873387	0.571429
heart_left_ventricle_female_adult_51_years	chr12	106833874	106833894	106833893	+	RAMPAGE_only	8	8	16	0.752770	2.899397	chr12	106833733	106834125	LTR|ERVL-MaLR|MSTB	+	chr12	106822257	106887282	RIC8B|ENST00000470960.1	+	106822257,106825725,106842588,106843851,106851449,106860267,106868300,106870822,106874480,106878986,106879774,106885903	106823447,106825820,106842817,106843947,106851594,106860412,106868423,106870942,106874567,106879125,106879947,106887282	1.000000
heart_left_ventricle_female_adult_51_years	chr4	122700441	122700442	122700441	+	High_confidence	214	215	265	12.467753	6.466942	chr4	122700197	122700669	LTR|ERVL|MER70A	+	chr4	122700443	122744943	STRG.7636.2	+	122700443,122741882	122700566,122744943	0.618868
heart_left_ventricle_female_adult_51_years	chr12	110334016	110334131	110334130	+	RAMPAGE_only	34	34	174	8.186373	6.251162	chr12	110334168	110334585	LINE|L2|L2a	+	chr12	110292048	110346621	ATP2A2|ENST00000548169.2	+	110292048,110296598,110326389,110327552,110332596,110333180,110334011,110339280,110339502,110340658,110342227,110343231,110344885,110345248,110346000,110346200	110292124,110296737,110326475,110328017,110332685,110333283,110334143,110339403,110339721,110340994,110342448,110343434,110344971,110345382,110346118,110346621	1.000000
heart_left_ventricle_female_adult_51_years	chr9	33394101	33394102	33394101	-	High_confidence	4	6	7	0.329337	2.584963	chr9	33394009	33394115	LINE|L2|L2b	+	chr9	33385505	33394176	AQP7|ENST00000447660.3	-	33385505,33386076,33386403,33393796	33385866,33386195,33386541,33394176	0.714286
heart_left_ventricle_female_adult_51_years	chr9	106450815	106450822	106450821	+	High_confidence	85	102	150	7.057218	6.181654	chr9	106450433	106450967	LTR|ERVL-MaLR|MLT1G1	+	chr9	106450815	106604795	LINC01505|ENST00000425709.1	+	106450815,106558471,106588376,106603755	106450888,106558583,106588464,106604795	0.653333
heart_left_ventricle_female_adult_51_years	chr8	123413102	123413112	123413102	-	RAMPAGE_only	5	5	18	0.846866	3.969816	chr8	123412758	123413395	LTR|ERV1|MER67B	+	chr8	123319859	123416348	STRG.13709.1	-	123319859,123322937,123325892,123328189,123333877,123334199,123336372,123337624,123339310,123344883,123346085,123346617,123347091,123348182,123349284,123356388,123357561,123359220,123359576,123361538,123369057,123369820,123370902,123371235,123371669,123372636,123380528,123412079,123416247	123321175,123323066,123326026,123328579,123334021,123334322,123336532,123337821,123339446,123345069,123346272,123346750,123347406,123348273,123349444,123356477,123357736,123359336,123359685,123361646,123369175,123370024,123370990,123371338,123371835,123372686,123380677,123412177,123416348	0.888889
heart_left_ventricle_female_adult_51_years	chr4	69525844	69525856	69525845	-	High_confidence	4	7	12	0.564577	2.855389	chr4	69525819	69526138	SINE|Alu|AluY	+	chr4	69480164	69526009	STRG.7205.3	-	69480164,69485207,69486608,69489438,69493692,69525686	69480910,69485427,69486696,69489570,69493841,69526009	1.000000
heart_left_ventricle_female_adult_51_years	chr4	64500466	64500467	64500466	-	RAMPAGE_only	15	15	15	0.705722	3.773557	chr4	64500297	64500658	LTR|ERVL-MaLR|THE1D	-	chr4	64275256	64409468	TECRL|ENST00000507440.5	-	64275256,64281040,64281473,64289709,64299973,64305165,64309825,64314647,64322688,64328511,64375171,64409117	64277051,64281086,64281559,64289767,64300017,64305238,64309931,64314763,64322792,64328556,64375223,64409468	0.733333
heart_left_ventricle_female_adult_51_years	chr19	5680240	5680259	5680240	-	High_confidence	8	8	29	1.364396	4.280395	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.965517
heart_left_ventricle_female_adult_51_years	chr6	56839178	56839181	56839178	-	RAMPAGE_only	88	92	150	7.057218	5.191844	chr6	56839131	56839380	LTR|ERVL-MaLR|MLT1J	+	chr6	56476180	56843146	STRG.10418.3	-	56476180,56477344,56482049,56482682,56485311,56487103,56489489,56492226,56492933,56494009,56497378,56497855,56501079,56501519,56503996,56506442,56506666,56508528,56509641,56511196,56515449,56517197,56517500,56526360,56527492,56528840,56529447,56529973,56532343,56535121,56536778,56552183,56555344,56557318,56560293,56561307,56562137,56568468,56569855,56572099,56572746,56573678,56578813,56592181,56593662,56597739,56598475,56600068,56601442,56602881,56603204,56603563,56603836,56610426,56611507,56614355,56624529,56625156,56627203,56627998,56629249,56630244,56631210,56631882,56632853,56634131,56634461,56634800,56635588,56636556,56639258,56639449,56639695,56639928,56640142,56641946,56642409,56645865,56646086,56648569,56650925,56651131,56670640,56699652,56701887,56703710,56704279,56735227,56843054	56476337,56477488,56482178,56482877,56485471,56487273,56489609,56492433,56493089,56494180,56497507,56498053,56501235,56501693,56504098,56506544,56506789,56508755,56509873,56511400,56515668,56517305,56517620,56526567,56527734,56528925,56529774,56530133,56532510,56535292,56536940,56553655,56555840,56557518,56560423,56561549,56562200,56568595,56570012,56572266,56573064,56573887,56578937,56592358,56594193,56598006,56598709,56600221,56601676,56603031,56603420,56603713,56609344,56610562,56611596,56614484,56624628,56625264,56627287,56628161,56629443,56630383,56631389,56632040,56633037,56634258,56634616,56634953,56635714,56636652,56639363,56639611,56639773,56640057,56640605,56642101,56642503,56645993,56646182,56648689,56651032,56651244,56670807,56699745,56701965,56703746,56704369,56735289,56843146	0.786667
heart_left_ventricle_female_adult_51_years	chr1	192925803	192925822	192925803	-	High_confidence	7	7	24	1.129155	3.306171	chr1	192925361	192925790	DNA|TcMar-Tigger|Tigger2a	-	chr1	192725880	192925752	AL390957.1|ENST00000645822.1	-	192725880,192764807,192766038,192792298,192826903,192925611	192726838,192764955,192766194,192792468,192826961,192925752	0.541667
heart_left_ventricle_female_adult_51_years	chr3	156540571	156540575	156540574	-	RAMPAGE_only	213	213	432	20.324789	3.512205	chr3	156540323	156540630	SINE|Alu|AluY	+	chr3	156539552	156554125	SSR3|NM_001308205.1	-	156539552,156544307,156548904,156553654,156553992	156543269,156544439,156549003,156553781,156554125	0.972222
heart_left_ventricle_female_adult_51_years	chr20	50131130	50131162	50131139	-	High_confidence	55	55	172	8.092277	6.000551	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.994186
heart_left_ventricle_female_adult_51_years	chr12	119247315	119247346	119247345	+	High_confidence	20	25	81	3.810898	4.263267	chr12	119247390	119247801	LTR|ERVL-MaLR|MSTA	+	chr12	119247312	119248478	STRG.19273.1	+	119247312,119248185	119247382,119248478	0.888889
heart_left_ventricle_female_adult_51_years	chr6	12103424	12103425	12103424	+	High_confidence	15	17	22	1.035059	4.021928	chr6	12103250	12103431	SINE|MIR|MIRb	-	chr6	12103285	12164998	STRG.9700.3	+	12103285,12119889,12129758,12130766,12135790,12161438,12163282	12103470,12125870,12129892,12130942,12135892,12161929,12164998	0.863636
heart_left_ventricle_female_adult_51_years	chr13	20832881	20832903	20832902	-	High_confidence	31	32	83	3.904994	4.322961	chr13	20832849	20832905	SINE|tRNA|LFSINE_Vert	-	chr13	20777809	20832897	STRG.19481.3	-	20777809,20786964,20787480,20788485,20790461,20796075,20796763,20799164,20800155,20800830,20807456,20808435,20809082,20809790,20821703,20822131,20832786	20783919,20787057,20787598,20788616,20790580,20796256,20797057,20799339,20800325,20800990,20807634,20808581,20809225,20809967,20821878,20822289,20832897	1.000000
heart_left_ventricle_female_adult_51_years	chr17	78986794	78986799	78986794	+	High_confidence	5	6	12	0.564577	3.022055	chr17	78986602	78987068	LTR|ERV1|MER4C	-	chr17	78986820	78992193	STRG.24426.1	+	78986820,78991105	78986912,78992193	1.000000
heart_left_ventricle_female_adult_51_years	chrX	136168194	136168209	136168194	+	High_confidence	38	38	81	3.810898	4.577014	chrX	136168049	136168241	SINE|MIR|MIR	-	chrX	136168193	136208575	FHL1|ENST00000434885.5	+	136168193,136169906,136206406,136207015,136207791,136208454	136168267,136169980,136206588,136207190,136207961,136208575	0.913580
heart_left_ventricle_female_adult_51_years	chrX	11351675	11351676	11351675	-	High_confidence	12	12	18	0.846866	3.572431	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11137543	11351720	STRG.28375.3	-	11137543,11142232,11143979,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11351385	11139530,11142313,11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11351720	0.888889
heart_left_ventricle_female_adult_51_years	chr14	77076158	77076194	77076188	-	High_confidence	15	15	48	2.258310	5.053509	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77073887	77076252	STRG.20642.1	-	77073887,77076104	77074598,77076252	0.833333
heart_left_ventricle_female_adult_51_years	chr15	62815309	62815310	62815309	+	High_confidence	4	4	6	0.282289	2.584963	chr15	62815347	62815498	LINE|CR1|L3	+	chr15	62815274	62841349	STRG.21526.7	+	62815274,62819515,62820485,62833503,62835736,62835890,62838855,62840481	62815444,62819621,62820610,62833629,62835799,62836073,62838981,62841349	1.000000
heart_left_ventricle_female_adult_51_years	chr6	2990740	2990755	2990748	-	High_confidence	11	15	40	1.881925	3.767621	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989728	2990750	STRG.9623.1	-	2989728,2990670	2990011,2990750	0.975000
heart_left_ventricle_female_adult_51_years	chr2	171936249	171936265	171936249	+	High_confidence	3	5	10	0.470481	2.641604	chr2	171935907	171936640	LINE|L2|L2	-	chr2	171936265	171983548	STRG.4248.2	+	171936265,171946707,171952880,171965337,171965786,171966408,171966842,171976156,171979246,171983184	171936346,171946783,171953001,171965517,171965908,171966513,171966949,171976308,171979363,171983548	0.700000
heart_left_ventricle_female_adult_51_years	chr4	88259828	88259977	88259886	-	RAMPAGE_only	14	14	79	3.716802	4.361199	chr4	88259832	88259915	SINE|Alu|AluJo	+	chr4	88257619	88284736	PPM1K|ENST00000608933.5	-	88257619,88265000,88268189,88268740,88277142,88278143,88284405	88262726,88265135,88268334,88268906,88277243,88278642,88284736	1.000000
heart_left_ventricle_female_adult_51_years	chr4	143350395	143350462	143350400	+	RAMPAGE_only	11	14	51	2.399454	4.662430	chr4	143350396	143350702	SINE|Alu|AluSp	+	chr4	143345066	143415981	STRG.7762.12	+	143345066,143415476	143345135,143415981	0.882353
heart_left_ventricle_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	198	273	557	26.205805	5.230057	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.973070
heart_left_ventricle_female_adult_51_years	chr17	59620040	59620052	59620040	+	High_confidence	9	10	47	2.211262	4.357468	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.957447
heart_left_ventricle_female_adult_51_years	chr15	25346017	25346028	25346023	-	High_confidence	81	82	299	14.067389	6.225048	chr15	25345979	25347018	LINE|L1|L1ME2	+	chr15	25333727	25346031	UBE3A|ENST00000636667.1	-	25333727,25340084,25345979	25339257,25340228,25346031	0.983278
heart_left_ventricle_female_adult_51_years	chr4	69525984	69526017	69525984	-	High_confidence	163	166	653	30.722424	4.696072	chr4	69525819	69526138	SINE|Alu|AluY	+	chr4	69480164	69526009	STRG.7205.3	-	69480164,69485207,69486608,69489438,69493692,69525686	69480910,69485427,69486696,69489570,69493841,69526009	0.973966
heart_left_ventricle_female_adult_51_years	chr9	73449389	73449390	73449389	+	RAMPAGE_only	6	6	8	0.376385	2.500000	chr9	73449365	73449579	SINE|Alu|AluJb	-	chr9	73445675	73479430	STRG.14562.1	+	73445675,73452820,73473989	73445719,73452914,73479430	0.750000
heart_left_ventricle_female_adult_51_years	chr16	46763151	46763246	46763230	-	High_confidence	102	105	597	28.087730	7.112779	chr16	46763076	46763184	SINE|MIR|MIRb	-	chr16	46727237	46763246	STRG.22619.3	-	46727237,46729023,46729593,46730592,46732207,46737710,46740056,46763039	46727377,46729133,46729687,46730698,46732668,46738143,46740147,46763246	0.934673
heart_left_ventricle_female_adult_51_years	chr7	158863386	158863401	158863386	+	RAMPAGE_only	3	3	14	0.658674	3.324863	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.857143
heart_left_ventricle_female_adult_51_years	chr6	38687135	38687155	38687135	-	RAMPAGE_only	10	12	38	1.787829	4.287302	chr6	38687125	38687432	LTR|ERVL|LTR16C	+	chr6	38675942	38683215	GLO1|ENST00000470973.1	-	38675942,38682011,38682807	38677383,38682101,38683215	0.631579
heart_left_ventricle_female_adult_51_years	chr2	8806813	8806860	8806859	-	High_confidence	5	5	13	0.611626	3.084963	chr2	8806591	8806879	SINE|Alu|AluSz6	-	chr2	8721222	8806655	STRG.2856.5	-	8721222,8726886,8733443,8734654,8736867,8747144,8747886,8750111,8751465,8770669,8776747,8778638,8778895,8779673,8785740,8786205,8788646,8789879,8791059,8793809,8796770,8798201,8800399,8802929,8806270,8806580	8725599,8726943,8733680,8734753,8736999,8747201,8748000,8750335,8751644,8770832,8776892,8778727,8779139,8779814,8786030,8786357,8788812,8790059,8791224,8793987,8796869,8798300,8800498,8803127,8806369,8806655	0.769231
heart_left_ventricle_female_adult_51_years	chr12	10710653	10710654	10710653	-	High_confidence	10	10	10	0.470481	2.921928	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.700000
heart_left_ventricle_female_adult_51_years	chr7	53811930	53811935	53811934	-	High_confidence	14	14	36	1.693732	4.631293	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.916667
heart_left_ventricle_female_adult_51_years	chr19	40608576	40608592	40608591	+	RAMPAGE_only	7	7	13	0.611626	3.418296	chr19	40608638	40608924	SINE|Alu|AluSq2	+	chr19	40609745	40629817	LTBP4|ENST00000243562.13	+	40609745,40610531,40611858,40612072,40613064,40613403,40613915,40614314,40616888,40617099,40619346,40622400,40622949,40623603,40623935,40625856,40626974,40627704,40629395	40609871,40610657,40611984,40612192,40613196,40613529,40614038,40614446,40617020,40617225,40619493,40622667,40623021,40623732,40624082,40626009,40627355,40627857,40629817	0.538462
heart_left_ventricle_female_adult_51_years	chr1	226364261	226364262	226364261	-	High_confidence	8	8	10	0.470481	2.725481	chr1	226364201	226364427	SINE|MIR|MIR	+	chr1	226361318	226364372	PARP1|ENST00000463968.5	-	226361318,226361968,226363098,226363942	226361541,226362083,226363160,226364372	0.700000
heart_left_ventricle_female_adult_51_years	chr2	37020221	37020250	37020227	-	RAMPAGE_only	51	51	187	8.797999	5.783241	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	37008167	37013995	HEATR5B|ENST00000471051.1	-	37008167,37013840	37008848,37013995	0.604278
heart_left_ventricle_female_adult_51_years	chr3	37058846	37058909	37058908	-	RAMPAGE_only	6	7	41	1.928973	4.521829	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.951220
heart_left_ventricle_female_adult_51_years	chr9	98943575	98943585	98943575	+	High_confidence	5	5	9	0.423433	3.169925	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
heart_left_ventricle_female_adult_51_years	chr5	32403116	32403149	32403116	-	RAMPAGE_only	25	26	70	3.293369	5.425411	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.971429
heart_left_ventricle_female_adult_51_years	chr17	75833295	75833330	75833329	-	RAMPAGE_only	3	3	7	0.329337	2.521641	chr17	75833179	75833712	LINE|L2|L2a	+	chr17	75829661	75830661	UNC13D|ENST00000590856.1	-	75829661,75830361,75830577	75830151,75830482,75830661	0.571429
heart_left_ventricle_female_adult_51_years	chr8	123413325	123413365	123413339	-	RAMPAGE_only	12	13	74	3.481561	5.611282	chr8	123412758	123413395	LTR|ERV1|MER67B	+	chr8	123319859	123416348	STRG.13709.1	-	123319859,123322937,123325892,123328189,123333877,123334199,123336372,123337624,123339310,123344883,123346085,123346617,123347091,123348182,123349284,123356388,123357561,123359220,123359576,123361538,123369057,123369820,123370902,123371235,123371669,123372636,123380528,123412079,123416247	123321175,123323066,123326026,123328579,123334021,123334322,123336532,123337821,123339446,123345069,123346272,123346750,123347406,123348273,123349444,123356477,123357736,123359336,123359685,123361646,123369175,123370024,123370990,123371338,123371835,123372686,123380677,123412177,123416348	0.864865
heart_left_ventricle_female_adult_51_years	chr1	31373705	31373711	31373705	-	High_confidence	26	26	43	2.023069	4.716972	chr1	31373523	31373667	SINE|MIR|MIRb	-	chr1	31365252	31373288	FABP3|NM_001320996.1	-	31365252,31367392,31369384,31372941	31365939,31367494,31369590,31373288	0.581395
heart_left_ventricle_female_adult_51_years	chr2	11201309	11201344	11201309	-	RAMPAGE_only	2	2	11	0.517529	2.913977	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11179760	11221340	STRG.2899.2	-	11179760,11184665,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197	11183440,11184769,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221340	1.000000
heart_left_ventricle_female_adult_51_years	chr12	45292786	45292826	45292825	+	High_confidence	5	5	25	1.176203	4.022055	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.920000
heart_left_ventricle_female_adult_51_years	chr12	90576482	90576496	90576494	+	High_confidence	12	17	42	1.976021	4.647322	chr12	90570465	90576624	LINE|L1|L1MA3	-	chr12	90576431	90611182	STRG.18945.1	+	90576431,90593568,90609487	90576581,90593811,90611182	0.761905
heart_left_ventricle_female_adult_51_years	chr6	107872858	107872871	107872870	-	RAMPAGE_only	4	4	8	0.376385	2.750000	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	1.000000
heart_left_ventricle_female_adult_51_years	chr12	29317865	29317900	29317865	-	High_confidence	10	10	37	1.740781	4.572431	chr12	29317690	29317914	SINE|MIR|MIRb	-	chr12	29280414	29317848	LOC100506606|NR_103860.1	-	29280414,29282163,29292214,29293065,29307849,29309770,29317707	29281542,29282360,29292328,29293540,29308044,29309903,29317848	0.918919
heart_left_ventricle_female_adult_51_years	chr11	11963658	11964291	11963658	-	RAMPAGE_only	49	60	1091	51.329502	6.923187	chr11	11963645	11963694	DNA|hAT-Ac|OldhAT1	-	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.983501
heart_left_ventricle_female_adult_51_years	chr4	119128249	119128294	119128293	-	High_confidence	72	72	205	9.644865	6.514048	chr4	119128208	119128490	LINE|L2|L2	+	chr4	119117641	119128280	STRG.7585.1	-	119117641,119122206,119128197	119120101,119122358,119128280	0.760976
heart_left_ventricle_female_adult_51_years	chr8	32927967	32927984	32927976	+	RAMPAGE_only	40	41	84	3.952042	5.422805	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.892857
heart_left_ventricle_female_adult_51_years	chr12	109179279	109179291	109179279	+	RAMPAGE_only	8	9	16	0.752770	3.500000	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109139396	109260147	ACACB|ENST00000377854.9	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260147	1.000000
heart_left_ventricle_female_adult_51_years	chr10	10911559	10911595	10911594	+	RAMPAGE_only	3	3	9	0.423433	3.000000	chr10	10911494	10911655	LTR|ERVL|LTR86B1	-	chr10	11005295	11336675	CELF2|NM_001025077.2	+	11005295,11165485,11217424,11249152,11257737,11266597,11270665,11275056,11288417,11314138,11321206,11325835,11328925	11005440,11165682,11217507,11249201,11257872,11266677,11270824,11275120,11288552,11314258,11321386,11325979,11336675	0.555556
heart_left_ventricle_female_adult_51_years	chr19	7635819	7635826	7635819	-	RAMPAGE_only	31	39	121	5.692823	5.149669	chr19	7635792	7635861	DNA|hAT-Blackjack|MER81	+	chr19	7631614	7633748	PCP2|ENST00000311069.5	-	7631614,7632392,7632715,7633406	7631808,7632517,7632830,7633748	0.876033
heart_left_ventricle_female_adult_51_years	chr2	55268641	55268664	55268644	-	High_confidence	2	2	9	0.423433	3.000000	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	0.888889
heart_left_ventricle_female_adult_51_years	chr9	128921940	128921961	128921960	+	High_confidence	20	20	40	1.881925	4.418723	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.875000
heart_left_ventricle_female_adult_51_years	chr22	35623191	35623192	35623191	-	High_confidence	19	19	20	0.940962	3.536887	chr22	35623096	35623262	SINE|MIR|MIR	-	chr22	35606763	35623354	MB|ENST00000359787.5	-	35606763,35610883,35617162,35623190	35607443,35611106,35617265,35623354	0.950000
heart_left_ventricle_female_adult_51_years	chr10	72220360	72220369	72220368	+	RAMPAGE_only	6	6	13	0.611626	3.084963	chr10	72220369	72220666	SINE|Alu|AluJo	+	chr10	72223132	72233829	ANAPC16|ENST00000470481.2	+	72223132,72230365,72233000	72224056,72230440,72233829	0.846154
heart_left_ventricle_female_adult_51_years	chr9	121313963	121314021	121314020	+	RAMPAGE_only	63	67	383	18.019431	5.578993	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
heart_left_ventricle_female_adult_51_years	chr5	62432226	62432227	62432226	+	High_confidence	9	9	13	0.611626	3.238901	chr5	62432201	62432725	LINE|L1|L1M4b	-	chr5	62432240	62451863	STRG.8433.3	+	62432240,62437273,62442982,62449926,62451729	62432354,62437417,62443083,62449999,62451863	0.846154
heart_left_ventricle_female_adult_51_years	chr7	107580245	107580267	107580264	+	High_confidence	692	696	3571	168.008848	6.496366	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.974797
heart_left_ventricle_female_adult_51_years	chr10	122029057	122029064	122029057	+	RAMPAGE_only	3	3	8	0.376385	2.521641	chr10	122029026	122029558	LINE|L1|L1MD	-	chr10	122021992	122083007	TACC2|ENST00000491540.1	+	122021992,122033093,122050437,122082655	122022014,122033153,122050550,122083007	0.875000
heart_left_ventricle_female_adult_51_years	chr20	18794077	18794086	18794077	+	High_confidence	8	8	14	0.658674	3.392747	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.928571
heart_left_ventricle_female_adult_51_years	chr7	111413976	111414006	111413976	-	RAMPAGE_only	4	4	11	0.517529	3.321928	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	110663049	111562291	IMMP2L|NM_032549.3	-	110663049,110886592,110963499,111487237,111521312,111561850	110663721,110886695,110963565,111487341,111521449,111562291	0.545455
heart_left_ventricle_female_adult_51_years	chr11	77175226	77175278	77175226	+	High_confidence	4	4	26	1.223251	4.103465	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175239	77179900	STRG.17471.1	+	77175239,77177548,77179044,77179734	77175464,77177643,77179129,77179900	0.961538
heart_left_ventricle_female_adult_51_years	chr20	37699417	37699451	37699417	+	RAMPAGE_only	2	2	8	0.376385	2.750000	chr20	37699323	37699502	SINE|MIR|MIRc	-	chr20	37694061	37872117	CTNNBL1|ENST00000628103.2	+	37694061,37727301,37732878,37737377,37746467,37757558,37765196,37767952,37777344,37777653,37779186,37802866,37840101,37842338,37859898,37860271,37871924	37694152,37727402,37733067,37737484,37746607,37757656,37765290,37768044,37777417,37777712,37779335,37803048,37840199,37842419,37860036,37860344,37872117	1.000000
heart_left_ventricle_female_adult_51_years	chr2	70574824	70574830	70574829	-	RAMPAGE_only	4	4	9	0.423433	3.169925	chr2	70574765	70575119	DNA|TcMar-Tigger|MER44A	+	chr2	70447279	70554015	TGFA|ENST00000295400.10	-	70447279,70453217,70456338,70465615,70514858,70553727	70450866,70453327,70456488,70465736,70514912,70554015	0.888889
heart_left_ventricle_female_adult_51_years	chr5	92329187	92329188	92329187	+	High_confidence	10	10	13	0.611626	3.546594	chr5	92329090	92329219	LINE|L2|L2a	-	chr5	92329229	92334297	STRG.8719.1	+	92329229,92332448,92334213	92329371,92332567,92334297	0.846154
heart_left_ventricle_female_adult_51_years	chr2	3536839	3536868	3536862	-	High_confidence	5	5	22	1.035059	3.984184	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531989	3536869	STRG.2832.3	-	3531989,3533710,3534112,3536723	3532310,3533946,3534255,3536869	0.727273
heart_left_ventricle_female_adult_51_years	chr9	111284874	111284875	111284874	-	High_confidence	12	12	13	0.611626	3.418296	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.769231
heart_left_ventricle_female_adult_51_years	chr1	241504052	241504150	241504052	-	RAMPAGE_only	5	6	38	1.787829	4.344589	chr1	241503964	241504054	SINE|MIR|MIRc	+	chr1	241497602	241519761	FH|ENST00000366560.3	-	241497602,241500436,241502442,241504041,241506002,241508602,241511966,241513602,241517181,241519590	241497970,241500590,241502570,241504245,241506168,241508785,241512143,241513713,241517316,241519761	0.973684
heart_left_ventricle_female_adult_51_years	chr6	6739315	6739316	6739315	-	High_confidence	5	5	8	0.376385	2.521641	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6704670	6739030	AL031123.1|ENST00000648205.1	-	6704670,6710871,6711696,6738908	6705078,6711059,6711858,6739030	0.750000
heart_left_ventricle_female_adult_51_years	chr5	137888993	137888994	137888993	+	High_confidence	7	7	7	0.329337	2.807355	chr5	137889005	137889194	SINE|MIR|MIRb	+	chr5	137888990	137889906	STRG.9088.1	+	137888990	137889906	0.857143
heart_left_ventricle_female_adult_51_years	chr1	231847792	231847807	231847792	-	High_confidence	8	8	21	0.988011	4.121928	chr1	231847541	231847935	LINE|L2|L2a	+	chr1	231809874	231847758	STRG.2662.4	-	231809874,231822679,231847518	231814291,231822834,231847758	0.904762
heart_left_ventricle_female_adult_51_years	chr1	63487956	63487959	63487958	+	High_confidence	21	32	37	1.740781	4.947703	chr1	63487767	63487999	DNA|TcMar-Tigger|Tigger3b	-	chr1	63487967	63518224	STRG.1014.1	+	63487967,63507319,63517755	63488277,63507607,63518224	0.702703
heart_left_ventricle_female_adult_51_years	chr10	95437800	95437822	95437815	-	RAMPAGE_only	58	59	123	5.786919	5.499576	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.642276
heart_left_ventricle_female_adult_51_years	chr5	109383431	109383465	109383431	-	High_confidence	3	3	13	0.611626	3.238901	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
heart_left_ventricle_female_adult_51_years	chr7	141280374	141280422	141280421	+	High_confidence	9	9	48	2.258310	4.730389	chr7	141280292	141280651	LTR|ERVL-MaLR|THE1B	+	chr7	141280365	141480380	STRG.12620.3	+	141280365,141437607,141470535	141280569,141437745,141480380	0.958333
heart_left_ventricle_female_adult_51_years	chr7	154928503	154928504	154928503	+	High_confidence	21	23	30	1.411444	4.487123	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.966667
heart_left_ventricle_female_adult_51_years	chr2	27716770	27716804	27716803	+	High_confidence	18	22	45	2.117166	4.467352	chr2	27716767	27716980	SINE|MIR|MIR	-	chr2	27716289	27739208	STRG.3068.1	+	27716289,27716846,27738272	27716732,27717018,27739208	0.555556
heart_left_ventricle_female_adult_51_years	chr6	77369158	77369167	77369166	-	High_confidence	16	18	36	1.693732	4.535849	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77211962	77369158	STRG.10461.1	-	77211962,77350621,77368885	77212053,77350734,77369158	0.583333
heart_left_ventricle_female_adult_51_years	chr15	90076128	90076155	90076128	-	High_confidence	4	5	13	0.611626	3.392747	chr15	90075976	90076144	DNA|hAT-Charlie|MER5A	-	chr15	90074511	90076644	ZNF710-AS1|ENST00000620791.1	-	90074511	90076644	1.000000
heart_left_ventricle_female_adult_51_years	chr6	31005869	31005906	31005891	+	High_confidence	3	3	11	0.517529	3.321928	chr6	31005825	31006127	SINE|Alu|AluSx1	+	chr6	31005951	31035402	MUC22|NM_001198815.1	+	31005951,31010669,31025501,31032195,31034671	31006133,31010776,31030100,31032581,31035402	0.818182
heart_left_ventricle_female_adult_51_years	chr8	17895488	17895513	17895511	-	High_confidence	9	12	29	1.364396	4.423252	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.965517
heart_left_ventricle_female_adult_51_years	chr5	133089672	133089693	133089692	+	RAMPAGE_only	6	7	22	1.035059	4.186704	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
heart_left_ventricle_female_adult_51_years	chr12	110936582	110936585	110936584	+	High_confidence	70	127	175	8.233422	5.649327	chr12	110936431	110936780	LTR|ERVL-MaLR|THE1D	+	chr12	110936601	110937451	LINC01405|ENST00000331096.2	+	110936601,110937184	110936698,110937451	0.725714
heart_left_ventricle_female_adult_51_years	chr4	52551583	52551639	52551597	-	High_confidence	100	133	355	16.702084	7.503093	chr4	52551375	52551835	LTR|ERVL|MER70A	-	chr4	52468469	52551629	STRG.7075.1	-	52468469,52510009,52519279,52521232,52551472	52472477,52510106,52519462,52521383,52551629	0.526761
heart_left_ventricle_female_adult_51_years	chr1	78620056	78620057	78620056	+	High_confidence	4	7	7	0.329337	2.521641	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	1.000000
heart_left_ventricle_female_adult_51_years	chr2	85376881	85376882	85376881	+	RAMPAGE_only	7	7	8	0.376385	2.807355	chr2	85376136	85377036	LINE|L1|L1MDa	-	chr2	85357190	85391094	ELMOD3|ENST00000444108.7	+	85357190,85362185,85363096,85368685,85369738,85371085,85371439,85377343,85387097,85389750,85390137,85390759	85357252,85362260,85363166,85368754,85369830,85371209,85371562,85377474,85387225,85389827,85390265,85391094	0.500000
heart_left_ventricle_female_adult_51_years	chr14	103848918	103848960	103848918	-	High_confidence	15	15	45	2.117166	4.075480	chr14	103848808	103849048	SINE|MIR|MIRb	+	chr14	103778754	103848947	STRG.20882.9	-	103778754,103784794,103797370,103848271	103778821,103784914,103797518,103848947	0.977778
heart_left_ventricle_female_adult_51_years	chr2	219419843	219419859	219419843	+	High_confidence	1	1	7	0.329337	2.584963	chr2	219419757	219419880	LINE|L2|L2b	-	chr2	219420044	219423820	DES|ENST00000477226.5	+	219420044,219420250,219420494,219420827,219421339,219423776	219420155,219420346,219420656,219420953,219421560,219423820	0.714286
heart_left_ventricle_female_adult_51_years	chr7	7688049	7688070	7688059	+	RAMPAGE_only	27	27	70	3.293369	4.644806	chr7	7688049	7688212	DNA|hAT-Charlie|Charlie4z	+	chr7	7689196	7722148	STRG.11345.12	+	7689196,7720912	7689460,7722148	0.914286
heart_left_ventricle_female_adult_51_years	chr7	7689346	7689372	7689358	+	High_confidence	20	20	83	3.904994	5.350441	chr7	7689061	7689544	LTR|ERVL-MaLR|MLT1L	+	chr7	7689196	7722148	STRG.11345.12	+	7689196,7720912	7689460,7722148	0.759036
heart_left_ventricle_female_adult_51_years	chr5	127858364	127858429	127858364	-	High_confidence	21	25	92	4.328427	4.446153	chr5	127858260	127858629	LINE|L2|L2c	+	chr5	127838485	127857804	AC068658.1|ENST00000507509.1	-	127838485,127857613	127838682,127857804	0.934783
heart_left_ventricle_female_adult_51_years	chr15	70942791	70942811	70942791	+	RAMPAGE_only	23	23	60	2.822887	4.968810	chr15	70942582	70942814	LTR|ERV1|MER4E1	-	chr15	70936534	71008438	LRRC49|ENST00000559806.5	+	70936534,70963784,70980100,70984093,71008378	70936822,70963932,70980184,70984257,71008438	0.800000
heart_left_ventricle_female_adult_51_years	chr15	97875618	97875641	97875618	-	High_confidence	3	5	17	0.799818	3.969816	chr15	97875560	97876737	LTR|ERV1|LTR12D	+	chr15	97874910	97875439	STRG.21918.1	-	97874910	97875439	0.705882
heart_left_ventricle_female_adult_51_years	chr1	201360453	201360454	201360453	-	RAMPAGE_only	98	98	106	4.987101	4.101577	chr1	201360361	201360542	SINE|MIR|MIR	-	chr1	201359007	201363350	TNNT2|ENST00000476888.5	-	201359007,201359622,201361278,201361950,201362385,201363295	201359255,201359663,201361369,201362022,201362394,201363350	0.990566
heart_left_ventricle_female_adult_51_years	chr6	123470222	123470273	123470230	+	RAMPAGE_only	12	14	48	2.258310	4.822156	chr6	123470218	123470313	LINE|L2|L2c	-	chr6	123439708	123509742	STRG.10854.5	+	123439708,123468815,123469636,123509445	123439777,123468930,123489605,123509742	0.958333
heart_left_ventricle_female_adult_51_years	chr6	82169303	82169337	82169336	-	RAMPAGE_only	15	15	35	1.646684	4.594672	chr6	82169335	82169431	SINE|Alu|AluSz6	+	chr6	81845243	82059644	STRG.10503.1	-	81845243,82057938,82059590	81845909,82058005,82059644	0.685714
heart_left_ventricle_female_adult_51_years	chr12	90576259	90576346	90576293	+	High_confidence	23	25	96	4.516620	5.359066	chr12	90570465	90576624	LINE|L1|L1MA3	-	chr12	90576248	90593822	STRG.18945.2	+	90576248,90593568	90576365,90593822	0.760417
heart_left_ventricle_female_adult_51_years	chr5	151158498	151158506	151158505	-	High_confidence	3	3	9	0.423433	2.641604	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.888889
heart_left_ventricle_female_adult_51_years	chr8	18076054	18076061	18076060	-	High_confidence	146	147	237	11.150405	6.093114	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18056461	18076037	ASAH1|ENST00000637922.1	-	18056461,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18067219,18069791,18071299,18075540,18075922	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18064531,18067298,18069878,18071390,18075587,18076037	0.523207
heart_left_ventricle_female_adult_51_years	chr11	123061165	123061323	123061322	-	High_confidence	20	29	241	11.338598	5.758066	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.950207
heart_left_ventricle_female_adult_51_years	chr5	151687240	151687261	151687240	-	High_confidence	8	8	33	1.552588	4.202820	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151667473	151687237	STRG.9338.2	-	151667473,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687237	0.909091
heart_left_ventricle_female_adult_51_years	chr11	65887614	65887630	65887614	-	High_confidence	3	3	6	0.282289	2.584963	chr11	65887463	65887575	LINE|L2|L2	-	chr11	65884008	65888436	STRG.17253.2	-	65884008,65884391,65884569,65884934,65885077,65885529,65886321,65887599,65887933,65888333	65884043,65884489,65884656,65884998,65885186,65885663,65886422,65887726,65888132,65888436	0.666667
heart_left_ventricle_female_adult_51_years	chr11	64242546	64242547	64242546	+	High_confidence	4	4	7	0.329337	2.584963	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.857143
heart_left_ventricle_female_adult_51_years	chr18	46087042	46087223	46087042	-	High_confidence	41	44	367	17.266661	6.849059	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.727520
heart_left_ventricle_female_adult_51_years	chr1	214278901	214278924	214278911	-	High_confidence	77	77	316	14.867207	6.779141	chr1	214278781	214279013	LINE|L2|L2c	+	chr1	214259002	214279007	STRG.2429.1	-	214259002,214264935,214278713	214262964,214264975,214279007	0.863924
heart_left_ventricle_female_adult_51_years	chr1	31376356	31376357	31376356	-	High_confidence	91	94	94	4.422524	4.497667	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31355723	31376357	STRG.534.1	-	31355723,31365730,31367392,31369384,31372941,31376355	31360830,31365939,31367494,31369557,31373041,31376357	0.946809
heart_left_ventricle_female_adult_51_years	chr1	31582600	31582602	31582600	+	High_confidence	6	11	11	0.517529	3.095795	chr1	31582337	31583033	LINE|L2|L2a	-	chr1	31583512	31587686	TINAGL1|ENST00000463112.1	+	31583512,31584885,31585439,31586709,31586838	31584801,31585340,31585876,31586755,31587686	1.000000
heart_left_ventricle_female_adult_51_years	chr2	10844223	10844267	10844266	+	High_confidence	12	12	55	2.587647	4.306067	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844247	10885118	STRG.2893.1	+	10844247,10844752,10884833	10844505,10844832,10885118	0.872727
heart_left_ventricle_female_adult_51_years	chr11	67884427	67884438	67884437	+	RAMPAGE_only	6	6	11	0.517529	3.121928	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.636364
heart_left_ventricle_female_adult_51_years	chr2	206847099	206847103	206847099	+	RAMPAGE_only	23	23	39	1.834877	4.576618	chr2	206847063	206847472	LINE|L2|L2c	-	chr2	206939553	206969474	CPO|NM_173077.2	+	206939553,206949616,206955462,206958300,206959630,206960851,206962411,206968262,206969173	206939667,206949713,206955564,206958405,206959741,206960942,206962614,206968347,206969474	0.564103
heart_left_ventricle_female_adult_51_years	chr19	44662311	44662373	44662334	+	RAMPAGE_only	4	4	12	0.564577	2.688722	chr19	44662259	44662524	SINE|Alu|AluJb	-	chr19	44643913	44663583	PVR|ENST00000187830.2	+	44643913,44647299,44649808,44653899,44657761,44658741,44661291,44661739	44644175,44647570,44650105,44654017,44657910,44658900,44661323,44663583	1.000000
heart_left_ventricle_female_adult_51_years	chr2	110118141	110118147	110118146	-	RAMPAGE_only	7	7	15	0.705722	3.139572	chr2	110117625	110118184	LINE|L1|L1MD2	-	chr2	110083869	110116566	MALL|NM_005434.4	-	110083869,110087571,110091602,110115687	110085757,110087697,110091770,110116566	1.000000
heart_left_ventricle_female_adult_51_years	chr1	35320229	35320263	35320229	+	RAMPAGE_only	6	6	29	1.364396	4.423252	chr1	35320238	35320853	LTR|ERVL|MER21C	+	chr1	35268966	35421944	ZMYM4|NM_005095.2	+	35268966,35325359,35358924,35361193,35361618,35370028,35370371,35381258,35381545,35385441,35386073,35387002,35387453,35388909,35389947,35392211,35392646,35393594,35396551,35397376,35398412,35398863,35399481,35405022,35405372,35408007,35413971,35415465,35418442,35419469	35269085,35325405,35359446,35361255,35361789,35370113,35370627,35381433,35381758,35385592,35386189,35387278,35387604,35389082,35390098,35392352,35392684,35393739,35396670,35397545,35398466,35399043,35399576,35405194,35405468,35408159,35414083,35415714,35418572,35421944	0.896552
heart_left_ventricle_female_adult_51_years	chr3	123335218	123335233	123335232	-	RAMPAGE_only	6	6	10	0.470481	2.646439	chr3	123334942	123335392	LTR|ERVL|MER74A	+	chr3	123300219	123404561	ADCY5|ENST00000466617.5	-	123300219,123303054,123304066,123314234,123318019,123319673,123320748,123325321,123327617,123328643,123330888,123332563,123347781,123352431,123404438	123300295,123303219,123304183,123314322,123318117,123319818,123320771,123325462,123327759,123328802,123331016,123332675,123347903,123352581,123404561	1.000000
heart_left_ventricle_female_adult_51_years	chr7	33554843	33554904	33554882	+	High_confidence	30	33	181	8.515710	5.936541	chr7	33553757	33554962	LINE|L2|L2a	-	chr7	33554834	33606068	STRG.11566.7	+	33554834,33604864,33605194	33554984,33604975,33606068	0.988950
heart_left_ventricle_female_adult_51_years	chr14	39004560	39004590	39004589	-	High_confidence	4	4	19	0.893914	3.725481	chr14	39004443	39004660	SINE|MIR|MIR3	+	chr14	38835181	39004580	STRG.20217.2	-	38835181,38835541,39004078	38835398,38839204,39004580	0.894737
heart_left_ventricle_female_adult_51_years	chr4	79258869	79258870	79258869	+	High_confidence	17	18	24	1.129155	4.334963	chr4	79257987	79259677	LTR|ERV1|MER52A	+	chr4	79258780	79308654	LINC01088|ENST00000511241.5	+	79258780,79306690,79308272	79259039,79306728,79308654	0.958333
heart_left_ventricle_female_adult_51_years	chr1	202452507	202452514	202452513	-	High_confidence	10	10	21	0.988011	3.281373	chr1	202451192	202452602	Retroposon|SVA|SVA_D	-	chr1	202451699	202452531	STRG.2293.1	-	202451699	202452531	0.714286
heart_left_ventricle_female_adult_51_years	chr1	226364299	226364323	226364322	-	High_confidence	6	6	18	0.846866	3.852169	chr1	226364201	226364427	SINE|MIR|MIR	+	chr1	226361318	226364372	PARP1|ENST00000463968.5	-	226361318,226361968,226363098,226363942	226361541,226362083,226363160,226364372	0.777778
heart_left_ventricle_female_adult_51_years	chr14	101823738	101823758	101823738	+	RAMPAGE_only	3	3	6	0.282289	2.584963	chr14	101823598	101823757	SINE|MIR|MIRc	-	chr14	101824837	101856885	PPP2R5C|ENST00000556373.1	+	101824837,101856685	101824922,101856885	0.500000
heart_left_ventricle_female_adult_51_years	chr21	42524957	42524978	42524977	+	RAMPAGE_only	6	6	12	0.564577	3.277613	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42513913	42581440	SLC37A1|ENST00000352133.2	+	42513913,42518276,42525775,42534697,42535471,42539511,42542403,42543435,42547102,42554061,42558957,42562077,42563814,42564707,42565826,42566984,42568359,42574817,42579735,42580344	42514717,42518510,42525857,42534830,42535550,42539647,42542480,42543602,42547140,42554142,42559089,42562168,42563877,42564793,42565875,42567058,42568438,42574915,42579800,42581440	0.750000
heart_left_ventricle_female_adult_51_years	chr2	40453541	40453542	40453541	-	High_confidence	5	5	7	0.329337	2.584963	chr2	40453521	40453703	DNA|hAT-Charlie|MER5B	+	chr2	40430019	40453438	SLC8A1|ENST00000455476.5	-	40430019,40453160	40430304,40453438	0.714286
heart_left_ventricle_female_adult_51_years	chr2	209495498	209495516	209495515	+	RAMPAGE_only	6	6	11	0.517529	2.721928	chr2	209495053	209495629	LINE|L1|L1P3	+	chr2	209424057	209730518	MAP2|ENST00000199940.10	+	209424057,209507591,209580035,209625052,209653141,209678571,209680749,209700276,209704449,209705579,209709913,209723594,209725708,209729849,209730181	209424276,209507641,209580100,209625129,209653432,209678685,209680827,209700338,209704620,209705727,209710254,209723687,209725790,209729962,209730518	0.909091
heart_left_ventricle_female_adult_51_years	chr1	201365871	201365905	201365904	-	RAMPAGE_only	2	2	7	0.329337	2.521641	chr1	201365815	201366035	SINE|MIR|MIRc	-	chr1	201360826	201366966	TNNT2|ENST00000515042.5	-	201360826,201361912,201362385,201363295,201364297,201365190,201365609,201366837	201361369,201362022,201362394,201363406,201364375,201365307,201365670,201366966	1.000000
heart_left_ventricle_female_adult_51_years	chr7	650742	650750	650749	-	High_confidence	5	5	10	0.470481	2.947703	chr7	650714	650757	SINE|MIR|MIRc	-	chr7	549749	650740	STRG.11246.4	-	549749,551388,579255,584507,596145,606192,607390,650613	550602,551470,579377,584568,596304,606239,607452,650740	0.800000
heart_left_ventricle_female_adult_51_years	chr1	6003022	6003035	6003022	+	RAMPAGE_only	60	60	241	11.338598	6.513926	chr1	6003009	6003075	SINE|MIR|MIRc	-	chr1	5992700	6098574	KCNAB2|ENST00000378092.5	+	5992700,6040516,6072754,6073732,6082194,6085203,6087466,6089007,6090388,6094399,6095322,6095529,6096635,6097268,6098484	5992788,6040645,6072798,6073770,6082274,6085248,6087511,6089051,6090475,6094485,6095443,6095624,6096756,6097357,6098574	0.622407
heart_left_ventricle_female_adult_51_years	chr10	70324458	70324482	70324458	-	RAMPAGE_only	8	8	22	1.035059	3.970573	chr10	70324412	70324716	LTR|ERVL-MaLR|MLT1M	+	chr10	70298969	70376779	LRRC20|NM_001278213.1	-	70298969,70323862,70376451,70376728	70301508,70324030,70376596,70376779	0.909091
heart_left_ventricle_female_adult_51_years	chr15	80059918	80059933	80059918	+	High_confidence	29	31	55	2.587647	5.032303	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.963636
heart_left_ventricle_female_adult_51_years	chr8	116648828	116648893	116648864	-	RAMPAGE_only	8	8	47	2.211262	4.339282	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
heart_left_ventricle_female_adult_51_years	chr6	2949656	2949676	2949675	-	RAMPAGE_only	7	7	20	0.940962	4.021928	chr6	2949217	2950248	LINE|L2|L2a	+	chr6	2948169	2955882	SERPINB6|ENST00000644697.1	-	2948169,2948913,2953043,2954591	2948699,2949069,2953186,2955882	0.950000
heart_left_ventricle_female_adult_53_years	chr7	133051984	133051985	133051984	-	High_confidence	8	8	8	0.388831	2.500000	chr7	133051904	133052049	SINE|MIR|MIR3	-	chr7	132785509	133052062	CHCHD3|ENST00000496427.5	-	132785509,132796441,132838398,132885661,132975168,133024545,133051983	132785660,132796577,132838469,132885745,132975286,133024627,133052062	1.000000
heart_left_ventricle_female_adult_53_years	chrX	44314305	44314312	44314305	-	RAMPAGE_only	5	5	19	0.923474	3.947703	chrX	44314142	44314275	LINE|L1|L1ME3Cz	-	chrX	44148664	44343672	EFHC2|ENST00000420999.1	-	44148664,44163921,44176291,44178366,44229648,44232480,44235304,44242120,44248271,44248802,44250193,44261074,44272685,44312567,44343546	44148896,44164027,44176384,44178564,44229779,44232677,44235447,44242289,44248410,44248916,44250445,44261298,44272836,44312756,44343672	0.736842
heart_left_ventricle_female_adult_53_years	chr22	50756908	50756940	50756908	+	High_confidence	3	3	9	0.437435	2.500000	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.666667
heart_left_ventricle_female_adult_53_years	chr11	123060137	123060257	123060256	-	High_confidence	68	89	652	31.689733	5.512321	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.731595
heart_left_ventricle_female_adult_53_years	chr14	44912628	44912629	44912628	-	High_confidence	7	7	8	0.388831	2.521641	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.500000
heart_left_ventricle_female_adult_53_years	chr9	62376620	62376633	62376632	+	High_confidence	4	4	10	0.486039	3.121928	chr9	62376600	62376639	SINE|MIR|MIRb	+	chr9	62376516	62434385	FGF7P6|ENST00000452826.2	+	62376516,62432875	62376813,62434385	1.000000
heart_left_ventricle_female_adult_53_years	chr10	30974858	30974879	30974868	-	RAMPAGE_only	10	11	39	1.895552	5.028992	chr10	30974767	30974948	SINE|MIR|MIR3	-	chr10	30844633	30984426	ZNF438|ENST00000331737.10	-	30844633,30848530,30857679,30876997,30908932,30910359,30941574,30984368	30845573,30850367,30857778,30877065,30909015,30910440,30941651,30984426	0.641026
heart_left_ventricle_female_adult_53_years	chr22	26512099	26512100	26512099	-	High_confidence	10	10	14	0.680454	3.378783	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	1.000000
heart_left_ventricle_female_adult_53_years	chr1	241504049	241504053	241504052	-	RAMPAGE_only	9	9	19	0.923474	3.572431	chr1	241503964	241504054	SINE|MIR|MIRc	+	chr1	241497602	241519761	FH|ENST00000366560.3	-	241497602,241500436,241502442,241504041,241506002,241508602,241511966,241513602,241517181,241519590	241497970,241500590,241502570,241504245,241506168,241508785,241512143,241513713,241517316,241519761	0.894737
heart_left_ventricle_female_adult_53_years	chr9	37426623	37426647	37426646	+	RAMPAGE_only	5	5	14	0.680454	3.392747	chr9	37426667	37426970	SINE|Alu|AluSx3	+	chr9	37427705	37436989	GRHPR|ENST00000497693.1	+	37427705,37436660	37432138,37436989	0.928571
heart_left_ventricle_female_adult_53_years	chr2	177499694	177499727	177499694	+	RAMPAGE_only	7	8	17	0.826266	3.690117	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.705882
heart_left_ventricle_female_adult_53_years	chr19	9658029	9658030	9658029	-	RAMPAGE_only	7	9	9	0.437435	2.750000	chr19	9657864	9657989	SINE|Alu|FLAM_C	-	chr19	9652278	9675044	ZNF562|ENST00000453372.6	-	9652278,9656546,9658008,9659378,9660719,9675014	9653881,9656653,9658135,9659467,9660874,9675044	0.888889
heart_left_ventricle_female_adult_53_years	chr9	19361943	19361944	19361943	+	RAMPAGE_only	8	10	11	0.534643	3.121928	chr9	19361992	19362295	SINE|Alu|AluSx1	+	chr9	19346555	19373545	DENND4C|ENST00000361024.6	+	19346555,19350701,19352072,19352489,19356971,19357964,19360243,19361845,19369836,19371755,19372036	19347086,19350879,19352182,19352665,19357154,19358160,19360489,19361963,19369987,19371820,19373545	0.909091
heart_left_ventricle_female_adult_53_years	chrX	5726324	5726325	5726324	-	High_confidence	12	14	15	0.729058	3.807355	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.800000
heart_left_ventricle_female_adult_53_years	chr1	202452513	202452514	202452513	-	High_confidence	13	14	18	0.874870	3.197160	chr1	202451192	202452602	Retroposon|SVA|SVA_D	-	chr1	202451842	202452429	STRG.2185.1	-	202451842	202452429	0.944444
heart_left_ventricle_female_adult_53_years	chr3	33143947	33143965	33143964	+	RAMPAGE_only	3	3	11	0.534643	2.921928	chr3	33143477	33144307	LINE|L2|L2a	-	chr3	33113978	33147773	CRTAP|ENST00000320954.10	+	33113978,33120343,33124407,33129938,33132554,33134181,33142394	33114548,33120493,33124579,33130067,33132700,33134265,33147773	0.909091
heart_left_ventricle_female_adult_53_years	chr22	35623191	35623192	35623191	-	High_confidence	19	19	19	0.923474	3.576618	chr22	35623096	35623262	SINE|MIR|MIR	-	chr22	35606763	35623354	MB|ENST00000359787.5	-	35606763,35610883,35617162,35623190	35607443,35611106,35617265,35623354	1.000000
heart_left_ventricle_female_adult_53_years	chr10	74969683	74969753	74969716	+	RAMPAGE_only	13	13	37	1.798344	4.350209	chr10	74969693	74969726	LINE|L2|L2a	-	chr10	74842619	75022125	KAT6B|ENST00000648369.1	+	74842619,74959969,74969659,74970019,74972506,74975398,74977315,74979223,74981786,74985079,75020581,75021125,75021880	74843478,74960078,74969775,74970101,74972639,74976330,74977437,74979339,74981928,74985241,75020813,75021285,75022125	0.972973
heart_left_ventricle_female_adult_53_years	chr16	53495091	53495104	53495096	-	RAMPAGE_only	5	5	12	0.583247	3.251629	chr16	53495050	53495112	LINE|L2|L2	+	chr16	53491647	53493968	AKTIP|ENST00000571523.2	-	53491647	53493968	0.500000
heart_left_ventricle_female_adult_53_years	chr20	322427	322428	322427	-	RAMPAGE_only	7	7	9	0.437435	2.947703	chr20	322321	322511	LINE|L2|L2a	+	chr20	320312	325234	NRSN2-AS1|ENST00000414676.5	-	320312,322377,325141	320781,322565,325234	1.000000
heart_left_ventricle_female_adult_53_years	chr6	141421627	141421646	141421627	+	High_confidence	7	7	21	1.020682	3.431624	chr6	141421530	141422111	LINE|L1|L1ME3A	-	chr6	141421569	141450974	STRG.10496.1	+	141421569,141446008	141421933,141450974	0.809524
heart_left_ventricle_female_adult_53_years	chr3	139344537	139344573	139344537	+	High_confidence	37	43	119	5.783862	5.117750	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.949580
heart_left_ventricle_female_adult_53_years	chr20	18794065	18794086	18794085	+	High_confidence	4	4	11	0.534643	3.277613	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
heart_left_ventricle_female_adult_53_years	chr20	20088590	20088599	20088597	-	High_confidence	13	20	34	1.652532	4.331977	chr20	20088284	20088660	LTR|ERVL-MaLR|THE1C	-	chr20	20079469	20089233	STRG.25638.5	-	20079469,20088366,20088851	20080997,20088435,20089233	0.500000
heart_left_ventricle_female_adult_53_years	chr21	44962781	44962791	44962790	+	High_confidence	5	5	13	0.631851	3.392747	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44962754	44976973	STRG.26472.5	+	44962754,44967033,44973196,44976679	44962870,44967181,44973265,44976973	0.846154
heart_left_ventricle_female_adult_53_years	chr1	100268280	100268281	100268280	+	RAMPAGE_only	64	64	72	3.499480	4.042033	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.958333
heart_left_ventricle_female_adult_53_years	chr3	33130043	33130063	33130062	+	RAMPAGE_only	7	7	14	0.680454	2.968919	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	0.928571
heart_left_ventricle_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	189	192	193	9.380550	4.959476	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.953368
heart_left_ventricle_female_adult_53_years	chr7	141280421	141280461	141280460	+	RAMPAGE_only	3	3	10	0.486039	2.921928	chr7	141280292	141280651	LTR|ERVL-MaLR|THE1B	+	chr7	141301657	141480359	STRG.12074.4	+	141301657,141437607,141470535	141301971,141437745,141480359	0.800000
heart_left_ventricle_female_adult_53_years	chr15	57451514	57451529	57451528	+	RAMPAGE_only	7	7	18	0.874870	3.146286	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57437978	57550717	STRG.20407.3	+	57437978,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547351	57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550717	0.944444
heart_left_ventricle_female_adult_53_years	chr1	147172975	147172997	147172976	+	High_confidence	3	5	10	0.486039	2.846439	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	1.000000
heart_left_ventricle_female_adult_53_years	chr19	1880087	1880088	1880087	-	High_confidence	18	18	23	1.117889	3.558519	chr19	1880079	1880146	DNA|hAT-Ac|OldhAT1	+	chr19	1877203	1880017	ABHD17A|ENST00000592757.1	-	1877203,1877507,1878663,1879920	1877425,1877687,1878904,1880017	0.782609
heart_left_ventricle_female_adult_53_years	chr9	121657626	121657627	121657626	+	RAMPAGE_only	12	12	13	0.631851	3.084963	chr9	121657411	121657646	SINE|MIR|MIRb	-	chr9	121651593	121785530	DAB2IP|ENST00000408936.7	+	121651593,121678677,121699324,121757012,121758897,121759884,121763504,121763734,121766493,121768431,121770545,121772606,121774259,121776197,121781463,121782330	121651899,121678781,121699458,121757166,121758996,121760439,121763649,121763879,121766730,121768633,121770724,121773495,121774412,121776391,121781551,121785530	0.692308
heart_left_ventricle_female_adult_53_years	chr22	37966318	37966357	37966318	+	RAMPAGE_only	18	18	56	2.721818	4.315076	chr22	37965988	37966342	LINE|L2|L2c	-	chr22	37953726	37967801	POLR2F|ENST00000470701.1	+	37953726,37956772,37959345,37967098,37967624	37953860,37956842,37959476,37967170,37967801	0.946429
heart_left_ventricle_female_adult_53_years	chr4	141220426	141220427	141220426	+	High_confidence	7	7	7	0.340227	2.521641	chr4	141220377	141220506	LINE|L2|L2	-	chr4	141220886	141234697	ZNF330|NM_014487.5	+	141220886,141222365,141224486,141224606,141226766,141229570,141230165,141231438,141232524,141233714	141221108,141222491,141224506,141224677,141226846,141229697,141230270,141231485,141232642,141234697	0.857143
heart_left_ventricle_female_adult_53_years	chr20	20089126	20089247	20089190	-	High_confidence	56	60	271	13.171653	6.075084	chr20	20089169	20089434	SINE|MIR|MIRb	+	chr20	20079469	20089233	STRG.25638.5	-	20079469,20088366,20088851	20080997,20088435,20089233	0.900369
heart_left_ventricle_female_adult_53_years	chr13	27445106	27445108	27445107	-	RAMPAGE_only	68	92	108	5.249220	5.677407	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.972222
heart_left_ventricle_female_adult_53_years	chr15	84836120	84836121	84836120	+	RAMPAGE_only	12	12	16	0.777662	3.506891	chr15	84835841	84837447	LINE|L2|L2a	-	chr15	84816679	84873482	ALPK3|NM_020778.4	+	84816679,84823329,84827483,84838979,84839701,84856391,84859242,84859775,84860036,84862634,84863551,84864441,84867316,84868110	84817595,84823368,84827605,84839097,84840932,84858555,84859390,84859903,84860072,84862915,84863640,84864665,84867365,84873482	0.937500
heart_left_ventricle_female_adult_53_years	chr11	118212190	118212214	118212213	-	High_confidence	5	5	9	0.437435	2.725481	chr11	118212116	118212308	SINE|MIR|MIRb	-	chr11	118205658	118212470	JAML|ENST00000531536.1	-	118205658,118210486,118212406	118205991,118210712,118212470	0.888889
heart_left_ventricle_female_adult_53_years	chr1	212234693	212234703	212234693	-	High_confidence	3	3	7	0.340227	2.521641	chr1	212234586	212234675	DNA|hAT-Charlie|Charlie24	-	chr1	212225277	212234736	LOC101929541|NR_125983.1	-	212225277,212230202,212234502	212225513,212230259,212234736	1.000000
heart_left_ventricle_female_adult_53_years	chr16	74485805	74485814	74485813	-	RAMPAGE_only	9	9	16	0.777662	3.240224	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	0.875000
heart_left_ventricle_female_adult_53_years	chrX	15353098	15353133	15353132	-	RAMPAGE_only	4	4	12	0.583247	3.022055	chrX	15352993	15353083	DNA|hAT-Ac|OldhAT1	-	chrX	15345971	15347475	VEGFD|ENST00000488351.1	-	15345971,15347163	15346259,15347475	1.000000
heart_left_ventricle_female_adult_53_years	chr3	12662795	12662796	12662795	-	RAMPAGE_only	12	12	13	0.631851	3.251629	chr3	12662589	12662820	LINE|L2|L2c	+	chr3	12584332	12664125	RAF1|ENST00000423275.5	-	12584332,12584846,12585121,12585680,12587590,12590797,12591707,12599690,12600151,12600387,12604135,12606200,12608765,12609232,12618514,12663812	12584657,12584981,12585253,12585799,12587637,12590974,12591792,12599808,12600279,12600415,12604289,12606299,12608923,12609335,12618747,12664125	0.846154
heart_left_ventricle_female_adult_53_years	chr4	152412494	152412529	152412494	-	High_confidence	11	11	29	1.409513	4.237291	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.965517
heart_left_ventricle_female_adult_53_years	chr20	13851415	13851426	13851425	-	High_confidence	8	8	16	0.777662	3.506891	chr20	13851304	13851476	LINE|L2|L2a	+	chr20	13849246	13851419	SEL1L2|ENST00000482196.5	-	13849246,13850190,13851323	13849604,13850319,13851419	0.937500
heart_left_ventricle_female_adult_53_years	chr14	23401199	23401200	23401199	-	RAMPAGE_only	19	21	21	1.020682	3.721612	chr14	23401007	23401306	SINE|Alu|AluSz	-	chr14	23382018	23407592	MYH6|ENST00000356287.3	-	23382018,23382427,23383224,23384441,23384915,23385927,23386314,23387528,23387757,23388154,23388858,23389392,23389592,23390056,23392561,23392911,23393341,23393665,23394067,23396283,23396693,23396962,23397169,23397542,23398727,23400255,23400708,23402463,23402696,23403347,23403714,23404295,23404710,23405099,23405222,23405626,23407022,23407575	23382063,23382562,23383320,23384717,23385041,23386131,23386623,23387653,23387923,23388338,23389055,23389511,23389719,23390446,23392652,23393057,23393518,23393908,23394323,23396420,23396817,23397080,23397257,23397613,23399037,23400426,23400977,23402602,23402800,23403446,23403778,23404388,23404822,23405127,23405379,23405770,23407236,23407592	0.809524
heart_left_ventricle_female_adult_53_years	chr11	65887614	65887615	65887614	-	High_confidence	7	7	7	0.340227	2.521641	chr11	65887463	65887575	LINE|L2|L2	-	chr11	65884934	65888436	FIBP|ENST00000532229.1	-	65884934,65885077,65885508,65887599,65887933,65888333	65884998,65885186,65885663,65887726,65888132,65888436	0.714286
heart_left_ventricle_female_adult_53_years	chr6	31400605	31400621	31400605	-	High_confidence	14	15	27	1.312305	3.873141	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31399779	31400605	STRG.9602.1	-	31399779	31400605	0.814815
heart_left_ventricle_female_adult_53_years	chr19	9140393	9140428	9140393	+	High_confidence	16	16	50	2.430194	4.833798	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.800000
heart_left_ventricle_female_adult_53_years	chr9	106450815	106450822	106450821	+	High_confidence	77	101	168	8.165453	6.041737	chr9	106450433	106450967	LTR|ERVL-MaLR|MLT1G1	+	chr9	106450815	106604795	LINC01505|ENST00000425709.1	+	106450815,106558471,106588376,106603755	106450888,106558583,106588464,106604795	0.714286
heart_left_ventricle_female_adult_53_years	chr7	131510249	131510250	131510249	-	High_confidence	6	6	8	0.388831	2.750000	chr7	131510213	131510511	SINE|Alu|AluSx3	+	chr7	131505888	131509402	PODXL|ENST00000487965.1	-	131505888,131506259,131506578,131508950	131506035,131506321,131506726,131509402	0.875000
heart_left_ventricle_female_adult_53_years	chr15	42415828	42415852	42415829	-	RAMPAGE_only	8	10	17	0.826266	3.572469	chr15	42415739	42416031	SINE|Alu|AluSx	-	chr15	42415122	42448298	ZNF106|ENST00000565500.5	-	42415122,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439552,42442414,42444262,42444981,42446658,42448298	0.588235
heart_left_ventricle_female_adult_53_years	chr12	109179254	109179285	109179279	+	RAMPAGE_only	15	15	40	1.944155	4.157859	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109139396	109260147	ACACB|ENST00000377854.9	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260147	0.975000
heart_left_ventricle_female_adult_53_years	chr19	571748	571792	571748	-	High_confidence	7	8	22	1.069285	3.533771	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.909091
heart_left_ventricle_female_adult_53_years	chrX	11351675	11351698	11351675	-	RAMPAGE_only	14	14	25	1.215097	4.055958	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.520000
heart_left_ventricle_female_adult_53_years	chr4	89291410	89291413	89291410	-	RAMPAGE_only	34	34	62	3.013441	4.715487	chr4	89291199	89291835	LINE|L1|L1ME1	-	chr4	89236385	89308010	GPRIN3|ENST00000609438.1	-	89236385,89307614	89250233,89308010	0.919355
heart_left_ventricle_female_adult_53_years	chr1	149229360	149229368	149229360	-	RAMPAGE_only	15	17	41	1.992759	4.784143	chr1	149229335	149229457	SINE|MIR|MIR3	+	chr1	149185176	149240804	STRG.1580.2	-	149185176,149197995,149198360,149201013,149240376	149190791,149198171,149198484,149201090,149240804	0.902439
heart_left_ventricle_female_adult_53_years	chr4	119145824	119145830	119145824	+	RAMPAGE_only	6	6	16	0.777662	3.272906	chr4	119145674	119147458	LINE|L1|L1MD1	-	chr4	119135783	119187789	MYOZ2|ENST00000307128.5	+	119135783,119136511,119150871,119158021,119164210,119185965	119135982,119136601,119151041,119158151,119164394,119187789	0.937500
heart_left_ventricle_female_adult_53_years	chr10	133369963	133370021	133369997	-	RAMPAGE_only	15	17	79	3.839707	5.542443	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.974684
heart_left_ventricle_female_adult_53_years	chr8	118995520	118995550	118995520	+	High_confidence	4	4	8	0.388831	2.750000	chr8	118995452	118995608	SINE|MIR|MIR3	-	chr8	118995451	119103867	COLEC10|ENST00000521788.1	+	118995451,119009440,119089679,119091148,119102347,119102525,119103799	118995573,119009553,119089751,119091220,119102401,119102694,119103867	0.625000
heart_left_ventricle_female_adult_53_years	chr5	177022057	177022093	177022057	+	High_confidence	10	10	21	1.020682	4.021928	chr5	177021951	177022107	LINE|L2|L2a	-	chr5	177022679	177067982	ZNF346|NM_012279.3	+	177022679,177041125,177041777,177044388,177050750,177062057,177064511	177022913,177041229,177041870,177044533,177050936,177062151,177067982	0.857143
heart_left_ventricle_female_adult_53_years	chr2	86482601	86482619	86482618	+	RAMPAGE_only	2	3	7	0.340227	2.584963	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.857143
heart_left_ventricle_female_adult_53_years	chr15	75879161	75879162	75879161	+	RAMPAGE_only	14	14	18	0.874870	3.337175	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75868950	75899577	UBE2Q2|ENST00000567921.1	+	75868950,75873427,75883365,75896994,75899426	75869010,75873568,75883424,75897061,75899577	0.833333
heart_left_ventricle_female_adult_53_years	chr8	123413165	123413166	123413165	-	RAMPAGE_only	9	9	12	0.583247	3.277613	chr8	123412758	123413395	LTR|ERV1|MER67B	+	chr8	123320501	123416350	ATAD2|ENST00000521903.5	-	123320501,123322937,123325892,123328189,123333877,123334199,123336372,123337624,123339310,123344883,123346085,123346617,123347091,123348186,123349284,123356388,123357561,123359220,123359576,123361538,123369057,123369820,123370902,123371235,123371669,123372636,123380528,123400742,123416247	123321175,123323066,123326026,123328579,123334021,123334322,123336532,123337821,123339446,123345069,123346272,123346750,123347406,123348273,123349421,123356477,123357736,123359336,123359685,123361646,123369175,123370024,123370990,123371338,123371835,123372686,123380677,123401175,123416350	0.750000
heart_left_ventricle_female_adult_53_years	chr10	79446833	79446869	79446868	-	RAMPAGE_only	33	33	80	3.888311	5.218469	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.925000
heart_left_ventricle_female_adult_53_years	chr17	21000803	21000856	21000816	-	RAMPAGE_only	4	4	18	0.874870	3.734522	chr17	21000780	21001059	SINE|Alu|AluSx	+	chr17	20999592	21043039	USP22|ENST00000261497.8	-	20999592,21004201,21004927,21006895,21007869,21011150,21012829,21015751,21017941,21019083,21021112,21028541,21042664	21003073,21004351,21004990,21006987,21007996,21011309,21012935,21015899,21018111,21019185,21021226,21028674,21043039	0.944444
heart_left_ventricle_female_adult_53_years	chr1	220032388	220032449	220032388	-	RAMPAGE_only	4	4	25	1.215097	3.490602	chr1	220032081	220032353	SINE|Alu|AluY	-	chr1	219987295	220046451	EPRS|ENST00000609181.5	-	219987295,219988589,219996982,220001137,220005247,220006105,220007201,220010945,220018125,220018448,220018994,220019987,220022346,220024263,220025131,220030385,220032386,220033501,220034913,220040184,220046342	219987404,219988823,219997342,220001255,220005360,220006313,220007338,220011056,220018146,220018508,220019079,220020221,220022518,220024456,220025258,220030480,220032526,220033658,220035013,220040269,220046451	0.960000
heart_left_ventricle_female_adult_53_years	chr18	12653084	12653098	12653097	-	High_confidence	11	11	23	1.117889	4.061482	chr18	12653065	12653265	DNA|hAT-Charlie|MER20	+	chr18	12506495	12653085	SPIRE1|ENST00000449797.5	-	12506495,12512453,12535475,12546673,12635061,12653000	12506641,12512531,12535601,12546904,12635096,12653085	0.869565
heart_left_ventricle_female_adult_53_years	chr16	14245647	14245648	14245647	+	RAMPAGE_only	16	16	20	0.972078	3.746439	chr16	14245645	14245696	SINE|tRNA|LFSINE_Vert	+	chr16	14079287	14266772	MRTFB|ENST00000318282.9	+	14079287,14140543,14210242,14212353,14213544,14217125,14218819,14234145,14240236,14245527,14246472,14248925,14251861,14252364,14258100,14260908	14079354,14140760,14210308,14212409,14213620,14217287,14218998,14234283,14240484,14245660,14247357,14249081,14252023,14252502,14258161,14266772	1.000000
heart_left_ventricle_female_adult_53_years	chr7	123553333	123553339	123553338	-	RAMPAGE_only	12	14	19	0.923474	3.794653	chr7	123553169	123553535	LTR|ERVL-MaLR|THE1B	-	chr7	123541095	123557455	NDUFA5|ENST00000378795.8	-	123541095,123545610,123550469,123557403	123542220,123545676,123550586,123557455	0.947368
heart_left_ventricle_female_adult_53_years	chr2	10844298	10844319	10844298	+	High_confidence	2	3	10	0.486039	3.121928	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844233	10885116	STRG.2711.1	+	10844233,10878270,10884833	10844505,10878444,10885116	0.700000
heart_left_ventricle_female_adult_53_years	chr6	6739315	6739316	6739315	-	High_confidence	15	15	16	0.777662	3.272906	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6710768	6739304	STRG.9311.1	-	6710768,6711696,6739029	6710981,6711858,6739304	0.750000
heart_left_ventricle_female_adult_53_years	chr8	53523963	53523997	53523963	-	High_confidence	10	11	19	0.923474	4.058814	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.842105
heart_left_ventricle_female_adult_53_years	chr2	10844364	10844374	10844373	+	High_confidence	8	8	26	1.263701	4.180833	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844233	10885116	STRG.2711.1	+	10844233,10878270,10884833	10844505,10878444,10885116	0.576923
heart_left_ventricle_female_adult_53_years	chr1	155478043	155478044	155478043	-	RAMPAGE_only	22	22	30	1.458117	3.447743	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
heart_left_ventricle_female_adult_53_years	chr3	183630129	183630136	183630135	+	RAMPAGE_only	9	9	21	1.020682	3.884184	chr3	183630102	183630275	LTR|ERV1?|LTR103b_Mam	+	chr3	183635567	183679478	KLHL24|ENST00000242810.10	+	183635567,183643479,183650295,183663457,183664920,183671033,183672295,183679085	183635793,183643542,183651276,183663642,183665039,183671222,183672484,183679478	0.809524
heart_left_ventricle_female_adult_53_years	chr20	322447	322468	322455	-	RAMPAGE_only	2	3	8	0.388831	2.807355	chr20	322321	322511	LINE|L2|L2a	+	chr20	320312	325234	NRSN2-AS1|ENST00000414676.5	-	320312,322377,325141	320781,322565,325234	0.875000
heart_left_ventricle_female_adult_53_years	chr17	43862349	43862356	43862355	+	RAMPAGE_only	3	3	8	0.388831	2.807355	chr17	43862401	43862560	DNA|hAT-Charlie|MER5A	+	chr17	43847175	43863629	CD300LG|ENST00000317310.4	+	43847175,43848557,43852911,43853806,43855206,43857103,43861797	43847259,43848893,43853013,43854044,43855319,43857156,43863629	0.875000
heart_left_ventricle_female_adult_53_years	chr3	194486602	194486626	194486602	-	High_confidence	3	3	15	0.729058	3.378783	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.866667
heart_left_ventricle_female_adult_53_years	chr1	20028515	20028516	20028515	+	High_confidence	182	202	223	10.838666	6.782857	chr1	20028464	20028814	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.726457
heart_left_ventricle_female_adult_53_years	chr7	38789812	38789813	38789812	-	RAMPAGE_only	8	9	9	0.437435	2.750000	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	0.888889
heart_left_ventricle_female_adult_53_years	chr5	151687240	151687245	151687244	-	High_confidence	15	15	28	1.360909	3.940073	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151667473	151687244	STRG.8988.2	-	151667473,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687244	0.857143
heart_left_ventricle_female_adult_53_years	chr12	46185944	46186047	46186046	-	RAMPAGE_only	30	30	95	4.617369	5.784285	chr12	46185953	46186190	DNA|TcMar-Tigger|Tigger16b	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	1.000000
heart_left_ventricle_female_adult_53_years	chr9	73445632	73445698	73445694	+	High_confidence	26	52	176	8.554284	6.136544	chr9	73445447	73445884	LTR|ERV1|LTR19A	+	chr9	73445683	73455088	STRG.13904.1	+	73445683,73452820,73454886	73445719,73452914,73455088	0.590909
heart_left_ventricle_female_adult_53_years	chr2	96638013	96638039	96638016	-	High_confidence	7	7	25	1.215097	4.088779	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.680000
heart_left_ventricle_female_adult_53_years	chr9	121286591	121286652	121286591	+	High_confidence	46	46	165	8.019641	6.217108	chr9	121286415	121286709	LINE|L2|L2b	+	chr9	121286591	121332656	GSN|ENST00000545652.6	+	121286591,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286761,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332656	0.951515
heart_left_ventricle_female_adult_53_years	chr8	93017660	93017716	93017715	-	High_confidence	34	35	205	9.963796	6.386072	chr8	93017253	93017736	LTR|ERVL|LTR79	-	chr8	92883634	93017673	STRG.12865.1	-	92883634,92891988,92916928,92921502,92954405,93017608	92886735,92892074,92917010,92921660,92954564,93017673	0.804878
heart_left_ventricle_female_adult_53_years	chr7	154928503	154928504	154928503	+	High_confidence	9	9	14	0.680454	3.664498	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.928571
heart_left_ventricle_female_adult_53_years	chr12	46266488	46266516	46266488	-	High_confidence	26	29	71	3.450876	5.119697	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.985915
heart_left_ventricle_female_adult_53_years	chr8	32927967	32927977	32927976	+	High_confidence	94	108	195	9.477758	5.856872	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927962	33044802	STRG.12504.1	+	32927962,32996200,33041634,33044366	32928093,32996316,33041771,33044802	0.871795
heart_left_ventricle_female_adult_53_years	chr11	119110868	119110890	119110889	+	High_confidence	9	12	15	0.729058	2.866248	chr11	119110843	119110902	LINE|CR1|L3b	+	chr11	119111056	119117121	C2CD2L|ENST00000528586.2	+	119111056,119111262,119111520,119112327,119112481,119112699,119113610,119113854,119114079,119116024	119111168,119111374,119111629,119112392,119112609,119112874,119113712,119113988,119114365,119117121	1.000000
heart_left_ventricle_female_adult_53_years	chr1	51403428	51403433	51403428	-	RAMPAGE_only	5	7	11	0.534643	2.646439	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.909091
heart_left_ventricle_female_adult_53_years	chr6	127330899	127330930	127330929	-	High_confidence	3	5	9	0.437435	2.500000	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.666667
heart_left_ventricle_female_adult_53_years	chr9	101385006	101385008	101385007	-	High_confidence	14	25	26	1.263701	4.323856	chr9	101384858	101386000	LTR|ERVK|MER11A	-	chr9	101360416	101385005	BAAT|NM_001701.3	-	101360416,101368119,101370938,101384854	101363015,101368322,101371463,101385005	0.730769
heart_left_ventricle_female_adult_53_years	chr1	11984765	11984766	11984765	+	RAMPAGE_only	202	208	247	12.005160	6.830008	chr1	11984495	11985279	LTR|ERVL|MER21A	+	chr1	11981991	11992673	MFN2|ENST00000412236.1	+	11981991,11982522,11989164,11992554	11982114,11982590,11989343,11992673	0.659919
heart_left_ventricle_female_adult_53_years	chr7	111778285	111778315	111778285	-	RAMPAGE_only	2	2	11	0.534643	3.095795	chr7	111778197	111778307	LINE|RTE-BovB|MamRTE1	+	chr7	111760223	111784426	DOCK4|ENST00000428053.5	-	111760223,111765117,111767031,111769528,111778275,111783856,111784383	111760322,111765222,111767118,111769677,111778369,111783952,111784426	0.727273
heart_left_ventricle_female_adult_53_years	chr1	33021412	33021419	33021412	-	RAMPAGE_only	3	3	12	0.583247	3.095795	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.666667
heart_left_ventricle_female_adult_53_years	chr15	57451557	57451565	57451562	+	RAMPAGE_only	15	15	29	1.409513	4.060262	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57437978	57550717	STRG.20407.3	+	57437978,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547351	57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550717	0.931034
heart_left_ventricle_female_adult_53_years	chr9	104763726	104763756	104763755	+	High_confidence	6	7	31	1.506720	4.244519	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	0.967742
heart_left_ventricle_female_adult_53_years	chr2	209495479	209495506	209495505	+	RAMPAGE_only	4	4	11	0.534643	3.121928	chr2	209495053	209495629	LINE|L1|L1P3	+	chr2	209424057	209730518	MAP2|ENST00000199940.10	+	209424057,209507591,209580035,209625052,209653141,209678571,209680749,209700276,209704449,209705579,209709913,209723594,209725708,209729849,209730181	209424276,209507641,209580100,209625129,209653432,209678685,209680827,209700338,209704620,209705727,209710254,209723687,209725790,209729962,209730518	0.818182
heart_left_ventricle_female_adult_53_years	chr2	44319312	44319313	44319312	-	RAMPAGE_only	36	36	52	2.527402	3.660657	chr2	44319280	44319536	LINE|L1|L1ME4c	+	chr2	44317606	44359749	PREPL|NM_001042386.2	-	44317606,44321826,44322730,44323261,44326711,44328936,44338350,44339146,44342416,44343744,44344519,44346267,44359496	44321445,44321900,44322854,44323411,44326928,44329112,44338536,44339363,44342552,44343951,44344586,44346390,44359749	0.942308
heart_left_ventricle_female_adult_53_years	chr6	2990748	2990755	2990754	-	RAMPAGE_only	8	8	15	0.729058	2.789898	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	1.000000
heart_left_ventricle_female_adult_53_years	chr2	182030747	182030774	182030773	+	High_confidence	13	13	43	2.089967	4.786503	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.767442
heart_left_ventricle_female_adult_53_years	chr8	144063549	144063570	144063554	-	High_confidence	4	4	13	0.631851	2.792481	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144053212	144063592	STRG.13250.3	-	144053212,144054560,144054811,144055028,144055787,144056146,144056384,144056617,144056947,144057207,144057447,144057855,144058009,144058238,144058495,144058772,144058979,144059598,144059861,144063471	144053393,144054735,144054913,144055189,144055939,144056259,144056523,144056755,144057118,144057320,144057713,144057923,144058148,144058404,144058691,144058896,144059079,144059790,144060085,144063592	0.923077
heart_left_ventricle_female_adult_53_years	chr2	182928788	182928864	182928789	-	RAMPAGE_only	9	14	37	1.798344	3.296726	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.972973
heart_left_ventricle_female_adult_53_years	chr5	79481703	79481791	79481790	-	RAMPAGE_only	13	13	85	4.131330	5.035533	chr5	79481262	79481938	LINE|L1|L1MEc	+	chr5	79375929	79512794	HOMER1|ENST00000508576.5	-	79375929,79439009,79447052,79450989,79456861,79512769	79376197,79439149,79447145,79451121,79457018,79512794	0.929412
heart_left_ventricle_female_adult_53_years	chr12	643625	643636	643635	-	High_confidence	27	27	55	2.673214	5.003042	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.600000
heart_left_ventricle_female_adult_53_years	chr2	159754093	159754106	159754093	+	RAMPAGE_only	12	12	27	1.312305	4.133661	chr2	159753563	159755683	LINE|L2|L2c	-	chr2	159752489	159767960	MARCH7|ENST00000420397.1	+	159752489,159759225,159762879,159767283	159752571,159759335,159762993,159767960	0.592593
heart_left_ventricle_female_adult_53_years	chr1	149197222	149197439	149197438	-	RAMPAGE_only	27	33	210	10.206816	6.169616	chr1	149197153	149197558	LTR|ERVL-MaLR|MLT1A0	-	chr1	149193008	149240804	STRG.1580.5	-	149193008,149198360,149201013,149240376	149198171,149198484,149201090,149240804	1.000000
heart_left_ventricle_female_adult_53_years	chr8	123413325	123413365	123413325	-	RAMPAGE_only	14	16	73	3.548084	5.582645	chr8	123412758	123413395	LTR|ERV1|MER67B	+	chr8	123320501	123416350	ATAD2|ENST00000521903.5	-	123320501,123322937,123325892,123328189,123333877,123334199,123336372,123337624,123339310,123344883,123346085,123346617,123347091,123348186,123349284,123356388,123357561,123359220,123359576,123361538,123369057,123369820,123370902,123371235,123371669,123372636,123380528,123400742,123416247	123321175,123323066,123326026,123328579,123334021,123334322,123336532,123337821,123339446,123345069,123346272,123346750,123347406,123348273,123349421,123356477,123357736,123359336,123359685,123361646,123369175,123370024,123370990,123371338,123371835,123372686,123380677,123401175,123416350	0.821918
heart_left_ventricle_female_adult_53_years	chr1	54200557	54200588	54200557	+	High_confidence	25	25	42	2.041363	4.603760	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.714286
heart_left_ventricle_female_adult_53_years	chr9	112471390	112471414	112471390	+	RAMPAGE_only	15	16	27	1.312305	4.023465	chr9	112471252	112471587	LTR|ERVL-MaLR|MLT1B	+	chr9	112380079	112472405	HSDL2|ENST00000398803.1	+	112380079,112403994,112405623,112418859,112438430,112441698,112454012,112459448,112470431	112380180,112404158,112405722,112418958,112438625,112441770,112454162,112459577,112472405	0.851852
heart_left_ventricle_female_adult_53_years	chr14	31136530	31136557	31136530	-	RAMPAGE_only	3	3	12	0.583247	3.459432	chr14	31136400	31136486	LINE|L1|L1M5	-	chr14	31113139	31168341	HECTD1|ENST00000553957.5	-	31113139,31113276,31113876,31114285,31116235,31119709,31121382,31122913,31127784,31128611,31133237,31133508,31134871,31135475,31136530,31139891,31141857,31144110,31144806,31148720,31148896,31149998,31156839,31157164,31168297	31113189,31113484,31114059,31114340,31116458,31119866,31121505,31123047,31128006,31129307,31133414,31133675,31135195,31135615,31136665,31139997,31141952,31144257,31144941,31148797,31149160,31150221,31157010,31157303,31168341	0.833333
heart_left_ventricle_female_adult_53_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	38	39	39	1.895552	4.313460	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	0.974359
heart_left_ventricle_female_adult_53_years	chr4	185620099	185620136	185620132	-	RAMPAGE_only	43	47	329	15.990678	5.072293	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.811550
heart_left_ventricle_female_adult_53_years	chr6	2949651	2949673	2949672	-	High_confidence	11	11	22	1.069285	3.880180	chr6	2949217	2950248	LINE|L2|L2a	+	chr6	2948195	2949661	STRG.9274.13	-	2948195,2948913,2949429	2948699,2949069,2949661	0.954545
heart_left_ventricle_female_adult_53_years	chr16	81664271	81664286	81664271	+	RAMPAGE_only	2	2	9	0.437435	2.750000	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.888889
heart_left_ventricle_female_adult_53_years	chr13	43053941	43054008	43053971	+	RAMPAGE_only	42	53	230	11.178894	5.161465	chr13	43052716	43054750	LINE|L1|L1PB1	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.982609
heart_left_ventricle_female_adult_53_years	chr19	41978621	41978646	41978621	-	RAMPAGE_only	3	5	10	0.486039	2.921928	chr19	41978480	41978588	LINE|L2|L2b	-	chr19	41966581	41993467	ATP1A3|NM_001256213.1	-	41966581,41967248,41967661,41968784,41969434,41970184,41970387,41975628,41976415,41977935,41978150,41978605,41981501,41981721,41981907,41984917,41985305,41985863,41986115,41987935,41988317,41988475,41993392	41966965,41967340,41967763,41968915,41969580,41970308,41970542,41975797,41976566,41978072,41978326,41978798,41981636,41981831,41982106,41985186,41985423,41985998,41986229,41988139,41988377,41988562,41993467	1.000000
heart_left_ventricle_female_adult_53_years	chr3	131804603	131804630	131804614	-	High_confidence	68	68	159	7.728018	5.641832	chr3	131804531	131804997	LTR|ERVL-MaLR|MLT1H	+	chr3	131534736	131804693	STRG.5771.1	-	131534736,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131804557	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131804693	0.823899
heart_left_ventricle_female_adult_53_years	chr1	39026110	39026151	39026130	+	High_confidence	5	5	13	0.631851	3.026987	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
heart_left_ventricle_female_adult_53_years	chr18	31227477	31227478	31227477	-	RAMPAGE_only	4	4	6	0.291623	2.584963	chr18	31226911	31227662	LINE|L2|L2	+	chr18	31129235	31162856	DSC1|ENST00000257198.5	-	31129235,31131593,31132567,31133890,31134571,31139747,31140041,31141998,31143656,31145610,31148497,31154773,31156042,31157370,31159444,31162531	31130711,31131842,31132689,31134130,31134784,31139890,31140301,31142184,31143791,31145777,31148642,31154929,31156162,31157573,31159529,31162856	0.500000
heart_left_ventricle_female_adult_53_years	chr17	19281955	19281966	19281965	+	High_confidence	2	2	8	0.388831	2.807355	chr17	19281937	19282036	LINE|L2|L2a	-	chr17	19281954	19313734	EPN2|ENST00000495155.5	+	19281954,19282949,19309884,19312051,19313104	19282077,19283714,19309997,19312144,19313734	0.875000
heart_left_ventricle_female_adult_53_years	chr11	46274422	46274427	46274422	-	High_confidence	7	7	17	0.826266	3.024397	chr11	46274366	46274400	SINE|MIR|MIR1_Amn	-	chr11	46256354	46274547	LINC02489|ENST00000527239.1	-	46256354,46274380	46256541,46274547	0.705882
heart_left_ventricle_female_adult_53_years	chr3	33864049	33864066	33864049	+	High_confidence	4	4	8	0.388831	2.500000	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33863895	33866468	PDCD6IP|ENST00000473593.1	+	33863895,33865242,33866350	33864129,33865430,33866468	0.500000
heart_left_ventricle_female_adult_53_years	chr9	68975842	68975846	68975842	-	High_confidence	1335	1379	2509	121.947147	5.973239	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.789159
heart_left_ventricle_female_adult_53_years	chr12	110440313	110440320	110440313	-	RAMPAGE_only	3	4	10	0.486039	2.846439	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	1.000000
heart_left_ventricle_female_adult_53_years	chr9	106450739	106450772	106450764	+	High_confidence	3	3	13	0.631851	3.251629	chr9	106450433	106450967	LTR|ERVL-MaLR|MLT1G1	+	chr9	106450815	106604795	LINC01505|ENST00000425709.1	+	106450815,106558471,106588376,106603755	106450888,106558583,106588464,106604795	0.923077
heart_left_ventricle_female_adult_53_years	chr11	123469402	123469415	123469402	+	RAMPAGE_only	44	49	107	5.200616	4.719727	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123480737	123594838	GRAMD1B|ENST00000633087.1	+	123480737,123577366,123584311,123594081,123594734	123480893,123577577,123584332,123594166,123594838	0.850467
heart_left_ventricle_female_adult_53_years	chr12	42388539	42388557	42388539	+	RAMPAGE_only	6	6	19	0.923474	3.681881	chr12	42387718	42388711	LTR|ERVK|LTR5B	+	chr12	42326177	42448618	PPHLN1|ENST00000432191.6	+	42326177,42335882,42355160,42374862,42384939,42387455,42393569,42398853,42441314,42442640,42445972,42446591	42326229,42335974,42355222,42375074,42384996,42387535,42393689,42398994,42441429,42442741,42446290,42448618	1.000000
heart_left_ventricle_female_adult_53_years	chr15	50766700	50766720	50766700	-	High_confidence	14	14	37	1.798344	4.777021	chr15	50766525	50766821	LINE|L2|L2a	+	chr15	50702265	50765808	SPPL2A|ENST00000261854.9	-	50702265,50719939,50722123,50725220,50726320,50730964,50732602,50736100,50736643,50739679,50747494,50748112,50748687,50749635,50765467	50707874,50720100,50722201,50725323,50726377,50731039,50732684,50736202,50736740,50739828,50747628,50748202,50748870,50749746,50765808	0.918919
heart_left_ventricle_female_adult_53_years	chr2	109546055	109546091	109546055	-	RAMPAGE_only	2	2	14	0.680454	2.968919	chr2	109545815	109546035	LINE|L2|L2a	-	chr2	109542796	109613657	SEPT10|NM_001321513.1	-	109542796,109553086,109564365,109565762,109567814,109574580,109585125,109585720,109593050,109613111	109546237,109553219,109564534,109565859,109567976,109574767,109585321,109585838,109593119,109613657	0.928571
heart_left_ventricle_female_adult_53_years	chr19	3062922	3062983	3062922	-	High_confidence	137	159	651	31.641129	6.258362	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.978495
heart_left_ventricle_female_adult_53_years	chr4	13399426	13399440	13399439	-	RAMPAGE_only	3	4	9	0.437435	2.641604	chr4	13399203	13400517	LINE|L1|L1ME3F	-	chr4	13368500	13381594	RAB28|ENST00000504644.1	-	13368500,13371794,13376544,13381490	13368650,13371867,13376622,13381594	0.555556
heart_left_ventricle_female_adult_53_years	chr5	66440352	66440389	66440355	-	High_confidence	190	219	964	46.854145	6.657942	chr5	66440146	66440632	LTR|ERVL-MaLR|MLT1F1	+	chr5	66347888	66440513	STRG.8110.1	-	66347888,66440146	66351228,66440513	0.604772
heart_left_ventricle_female_adult_53_years	chr17	42403920	42404154	42403920	-	RAMPAGE_only	8	9	145	7.047563	5.950724	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	0.993103
heart_left_ventricle_female_adult_53_years	chr2	55654907	55654929	55654907	-	RAMPAGE_only	3	4	8	0.388831	2.500000	chr2	55654742	55654866	SINE|Alu|AluJr	-	chr2	55636369	55647382	PNPT1|ENST00000481066.1	-	55636369,55637551,55640626,55643157,55643318,55644636,55646258,55646414,55647346	55636392,55637599,55640705,55643213,55643425,55645432,55646322,55646486,55647382	1.000000
heart_left_ventricle_female_adult_53_years	chr14	32075821	32075822	32075821	+	High_confidence	13	13	15	0.729058	3.093069	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32075814	32154827	STRG.19247.5	+	32075814,32090501,32117139,32146262,32149901,32152422,32154620	32076217,32094386,32117287,32146340,32150033,32152528,32154827	0.933333
heart_left_ventricle_female_adult_53_years	chr14	32075864	32075880	32075879	+	High_confidence	9	9	24	1.166493	4.142915	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32075814	32117291	STRG.19247.9	+	32075814,32076457,32090501,32117139	32076217,32076657,32094386,32117291	0.958333
heart_left_ventricle_female_adult_53_years	chr22	37755641	37755652	37755641	+	High_confidence	4	5	13	0.631851	2.565448	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37754881	37774140	STRG.26835.3	+	37754881,37755100,37755549,37757612,37759153,37765669,37768073,37769027,37769261,37771649,37772600	37754984,37755190,37755659,37758138,37759264,37765817,37768176,37769187,37769375,37771736,37774140	1.000000
heart_left_ventricle_female_adult_53_years	chr2	186602127	186602144	186602143	+	RAMPAGE_only	3	3	12	0.583247	3.418296	chr2	186602116	186602175	LINE|RTE-BovB|MamRTE1	-	chr2	186600204	186677441	ITGAV|ENST00000433736.6	+	186600204,186602020,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186600381,186602151,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186677441	1.000000
heart_left_ventricle_female_adult_53_years	chr10	89516179	89516215	89516214	-	RAMPAGE_only	4	5	14	0.680454	3.546594	chr10	89516159	89516235	LINE|L2|L2a	+	chr10	89430293	89535556	SLC16A12|NM_213606.3	-	89430293,89436059,89438603,89441107,89443755,89462378,89534500,89535441	89433326,89436319,89439183,89441251,89443859,89462624,89534640,89535556	0.785714
heart_left_ventricle_female_adult_53_years	chr1	147173219	147173250	147173225	+	High_confidence	6	6	22	1.069285	3.748995	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.818182
heart_left_ventricle_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	43	43	44	2.138571	3.774647	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.977273
heart_left_ventricle_female_adult_53_years	chr20	20088993	20089045	20089032	-	High_confidence	14	27	100	4.860388	5.033660	chr20	20088660	20089017	LINE|RTE-X|L4_B_Mam	-	chr20	20079469	20089233	STRG.25638.5	-	20079469,20088366,20088851	20080997,20088435,20089233	0.800000
heart_left_ventricle_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	121	123	164	7.971037	6.210298	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.926829
heart_left_ventricle_female_adult_53_years	chr16	72073244	72073245	72073244	+	High_confidence	9	9	10	0.486039	2.725481	chr16	72072861	72073376	LTR|ERV1|LTR10B	+	chr16	72074031	72077248	STRG.21806.1	+	72074031,72075144,72076302	72074385,72075219,72077248	0.800000
heart_left_ventricle_female_adult_53_years	chr4	69525978	69526006	69525984	-	High_confidence	10	10	42	2.041363	3.875071	chr4	69525819	69526138	SINE|Alu|AluY	+	chr4	69480164	69526014	UGT2B4|NM_001297616.1	-	69480164,69485207,69486608,69489438,69493692,69495140,69525686	69480910,69485427,69486696,69489570,69493841,69495410,69526014	0.857143
heart_left_ventricle_female_adult_53_years	chr1	226364306	226364323	226364306	-	High_confidence	7	8	16	0.777662	3.506891	chr1	226364201	226364427	SINE|MIR|MIR	+	chr1	226361318	226364372	PARP1|ENST00000463968.5	-	226361318,226361968,226363098,226363942	226361541,226362083,226363160,226364372	0.937500
heart_left_ventricle_female_adult_53_years	chr2	40453270	40453271	40453270	-	High_confidence	15	15	16	0.777662	3.323231	chr2	40453124	40453283	DNA|hAT-Charlie|MER5A	-	chr2	40430019	40453438	SLC8A1|ENST00000455476.5	-	40430019,40453160	40430304,40453438	0.750000
heart_left_ventricle_female_adult_53_years	chr12	123390743	123390744	123390743	+	High_confidence	7	7	11	0.534643	3.095795	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	1.000000
heart_left_ventricle_female_adult_53_years	chr5	151158488	151158506	151158488	-	High_confidence	3	3	11	0.534643	2.913977	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	1.000000
heart_left_ventricle_female_adult_53_years	chr8	39017063	39017078	39017077	+	High_confidence	325	331	596	28.967915	6.923743	chr8	39016988	39017120	SINE|MIR|MIRb	-	chr8	39017035	39021713	ADAM9|ENST00000481058.1	+	39017035,39018852,39021642	39017414,39018918,39021713	0.630872
heart_left_ventricle_female_adult_53_years	chr19	41262670	41262718	41262717	+	High_confidence	7	7	13	0.631851	3.392747	chr19	41262757	41263068	SINE|Alu|AluSq	+	chr19	41262670	41276168	HNRNPUL1|ENST00000601309.5	+	41262670,41268222,41272081,41273981,41276158	41262981,41268345,41272235,41274055,41276168	1.000000
heart_left_ventricle_female_adult_53_years	chr1	56645638	56645664	56645663	+	High_confidence	3	3	8	0.388831	2.521641	chr1	56645691	56645853	SINE|MIR|MIR3	+	chr1	56645387	56715334	PRKAA2|ENST00000610361.1	+	56645387,56671440,56674380,56691393,56692357,56693764,56695934,56703970,56706091,56707474	56645474,56671447,56674522,56691487,56692502,56693852,56696159,56704475,56706218,56715334	0.750000
heart_left_ventricle_female_adult_53_years	chr19	58306086	58306117	58306086	+	High_confidence	3	3	13	0.631851	3.238901	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.692308
heart_left_ventricle_female_adult_53_years	chr1	1655410	1655411	1655410	-	RAMPAGE_only	50	52	65	3.159253	5.534841	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	0.953846
heart_left_ventricle_female_adult_53_years	chr2	44319347	44319348	44319347	-	RAMPAGE_only	11	11	13	0.631851	2.918296	chr2	44319280	44319536	LINE|L1|L1ME4c	+	chr2	44317606	44359749	PREPL|NM_001042386.2	-	44317606,44321826,44322730,44323261,44326711,44328936,44338350,44339146,44342416,44343744,44344519,44346267,44359496	44321445,44321900,44322854,44323411,44326928,44329112,44338536,44339363,44342552,44343951,44344586,44346390,44359749	0.923077
heart_left_ventricle_female_adult_53_years	chr17	4143196	4143215	4143199	+	High_confidence	103	108	221	10.741459	5.819730	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.981900
heart_left_ventricle_female_adult_53_years	chr19	12800915	12801065	12800935	-	High_confidence	14	14	61	2.964837	5.190389	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.950820
heart_left_ventricle_female_adult_53_years	chr2	185425044	185425086	185425085	+	High_confidence	3	3	6	0.291623	2.584963	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185425354	185434160	STRG.4035.1	+	185425354,185434096	185425507,185434160	0.666667
heart_left_ventricle_female_adult_53_years	chr2	218287266	218287280	218287279	-	High_confidence	106	106	221	10.741459	5.846099	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.809955
heart_left_ventricle_female_adult_53_years	chr4	88595594	88595601	88595594	+	RAMPAGE_only	4	4	9	0.437435	2.750000	chr4	88595552	88595664	SINE|MIR|MIR3	+	chr4	88593377	88653088	HERC3|ENST00000452979.5	+	88593377,88595556,88605794,88649839,88652011,88652868	88593494,88595614,88606049,88649999,88652088,88653088	0.888889
heart_left_ventricle_female_adult_53_years	chr19	48753676	48753677	48753676	-	High_confidence	21	22	23	1.117889	4.106603	chr19	48753519	48753902	LTR|ERVK|LTR13A	-	chr19	48748010	48753660	FUT1|ENST00000645652.1	-	48748010,48752489,48752891,48753324,48753647	48751283,48752725,48753122,48753563,48753660	0.913043
heart_left_ventricle_female_adult_53_years	chr5	160412454	160412465	160412464	-	RAMPAGE_only	3	3	7	0.340227	2.584963	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160401640	160419161	SLU7|NM_006425.4	-	160401640,160404439,160404808,160405030,160406467,160407475,160407745,160407970,160408328,160408649,160412450,160413455,160413898,160414318,160415124,160419022	160403464,160404556,160404880,160405135,160406629,160407615,160407813,160408068,160408460,160408697,160412519,160413620,160413979,160414472,160415310,160419161	0.857143
heart_left_ventricle_female_adult_53_years	chr15	92591540	92591566	92591558	+	High_confidence	8	8	41	1.992759	4.774243	chr15	92591487	92591582	LINE|RTE-X|L4_A_Mam	+	chr15	92591547	92600545	STRG.20813.1	+	92591547,92600337	92591614,92600545	0.804878
heart_left_ventricle_female_adult_53_years	chr10	6737341	6737362	6737341	+	High_confidence	3	3	10	0.486039	2.646439	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	1.000000
heart_left_ventricle_female_adult_53_years	chr2	53949202	53949278	53949277	-	RAMPAGE_only	6	6	45	2.187175	4.327267	chr2	53949277	53949447	LINE|L1|L1MB1	+	chr2	53936094	53970778	PSME4|ENST00000481518.1	-	53936094,53936763,53937390,53939955,53942158,53948420,53949142,53970542	53936161,53936827,53937540,53940000,53942224,53948537,53949283,53970778	0.955556
heart_left_ventricle_female_adult_53_years	chr19	7515217	7515271	7515217	+	High_confidence	8	8	43	2.089967	4.546847	chr19	7514930	7515246	LTR|ERV1|MER90	-	chr19	7515291	7519751	ZNF358|ENST00000596712.1	+	7515291,7519204	7515406,7519751	0.976744
heart_left_ventricle_female_adult_53_years	chr5	69396535	69396540	69396535	+	RAMPAGE_only	3	3	8	0.388831	2.500000	chr5	69396563	69396626	LINE|L1|L1MB7	+	chr5	69391967	69414255	RAD17|ENST00000513214.1	+	69391967,69393154,69393353,69396396,69400048,69414030	69392013,69393240,69393500,69396546,69400169,69414255	1.000000
heart_left_ventricle_female_adult_53_years	chr12	20365005	20365021	20365005	+	RAMPAGE_only	5	5	16	0.777662	3.077820	chr12	20364713	20365128	LINE|L2|L2a	-	chr12	20369244	20684107	PDE3A|NM_000921.4	+	20369244,20556659,20613442,20616229,20621295,20629907,20633692,20634901,20637099,20639845,20646489,20646750,20648687,20650444,20653946,20680029	20370244,20556710,20613700,20616384,20621411,20630127,20633778,20635056,20637237,20639957,20646603,20646950,20648891,20650600,20654205,20684107	0.937500
heart_left_ventricle_female_adult_53_years	chr11	123625562	123625614	123625562	+	RAMPAGE_only	3	4	24	1.166493	3.886842	chr11	123625572	123625740	SINE|MIR|MIR3	+	chr11	123591086	123627774	GRAMD1B|ENST00000646146.1	+	123591086,123594081,123594734,123595941,123600467,123603425,123605321,123606608,123608658,123609794,123610195,123612760,123613454,123614744,123618344,123618692,123619106,123622505	123591541,123594166,123594838,123596037,123600548,123603541,123605478,123606798,123608802,123609913,123610338,123612864,123613658,123614835,123618356,123618800,123619224,123627774	1.000000
heart_left_ventricle_female_adult_53_years	chr22	17728409	17728440	17728409	+	RAMPAGE_only	11	12	34	1.652532	3.709868	chr22	17728412	17728476	LINE|CR1|CR1-3_Croc	+	chr22	17706657	17730855	BCL2L13|NM_001270733.1	+	17706657,17726676	17706825,17730855	0.941176
heart_left_ventricle_female_adult_53_years	chr12	120465645	120465651	120465645	-	High_confidence	4	5	8	0.388831	2.521641	chr12	120465539	120465607	SINE|MIR|MIRb	-	chr12	120461710	120464943	SRSF9|ENST00000548792.1	-	120461710,120463949	120462162,120464943	0.875000
heart_left_ventricle_female_adult_53_years	chr1	227142955	227142978	227142955	-	RAMPAGE_only	2	4	8	0.388831	2.750000	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317714	CDC42BPA|ENST00000334218.9	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227059372,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227112670,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227059411,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227112913,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317714	1.000000
heart_left_ventricle_female_adult_53_years	chr3	193614738	193614873	193614872	+	High_confidence	7	7	75	3.645291	4.035606	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.986667
heart_left_ventricle_female_adult_53_years	chr16	72014395	72014419	72014418	+	High_confidence	5	5	15	0.729058	3.456565	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.666667
heart_left_ventricle_female_adult_53_years	chr8	122736169	122736196	122736169	-	RAMPAGE_only	2	2	11	0.534643	2.921928	chr8	122735962	122736195	SINE|MIR|MIRc	-	chr8	122700268	122703423	AC100872.1|ENST00000577765.1	-	122700268,122703066	122700412,122703423	0.636364
heart_left_ventricle_female_adult_53_years	chr11	64242588	64242620	64242588	+	High_confidence	11	16	63	3.062045	4.949191	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.968254
heart_left_ventricle_female_adult_53_years	chr11	67884427	67884438	67884427	+	RAMPAGE_only	7	7	17	0.826266	3.051602	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	1.000000
heart_left_ventricle_female_adult_53_years	chr10	72220310	72220311	72220310	+	RAMPAGE_only	18	18	25	1.215097	3.543465	chr10	72220047	72220353	SINE|Alu|AluSp	+	chr10	72223132	72233829	ANAPC16|ENST00000470481.2	+	72223132,72230365,72233000	72224056,72230440,72233829	0.880000
heart_left_ventricle_female_adult_53_years	chr8	53523855	53523863	53523862	-	High_confidence	7	7	14	0.680454	3.093069	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.928571
heart_left_ventricle_female_adult_53_years	chr3	157089692	157089742	157089692	+	High_confidence	2	3	15	0.729058	3.640224	chr3	157089613	157089857	SINE|MIR|MIRb	+	chr3	157089880	157101135	LINC00881|NR_034008.1	+	157089880,157099482,157100685	157090122,157099581,157101135	1.000000
heart_left_ventricle_female_adult_53_years	chr15	70676500	70676526	70676500	-	RAMPAGE_only	4	4	13	0.631851	3.022055	chr15	70676255	70676461	SINE|MIR|MIRb	-	chr15	70654553	70702281	UACA|NM_001008224.1	-	70654553,70660150,70664661,70666723,70671038,70671964,70676492,70677107,70678098,70679607,70682757,70684264,70687539,70687749,70690453,70691298,70695016,70699526,70701876	70657127,70660216,70664814,70669462,70671091,70672001,70676591,70677140,70678206,70679676,70682795,70684446,70687646,70687820,70690511,70691363,70695105,70699660,70702281	0.923077
heart_left_ventricle_female_adult_53_years	chr1	65218895	65218909	65218895	+	RAMPAGE_only	3	5	11	0.534643	2.845351	chr1	65218928	65219138	LINE|L1|L1M5	+	chr1	65165931	65226429	AK4|ENST00000479060.1	+	65165931,65190709,65218753,65224751,65226062	65166019,65190829,65218926,65224870,65226429	0.909091
heart_left_ventricle_female_adult_53_years	chr12	110334016	110334131	110334130	+	RAMPAGE_only	91	93	273	13.268861	6.466787	chr12	110334168	110334585	LINE|L2|L2a	+	chr12	110292048	110346621	ATP2A2|ENST00000548169.2	+	110292048,110296598,110326389,110327552,110332596,110333180,110334011,110339280,110339502,110340658,110342227,110343231,110344885,110345248,110346000,110346200	110292124,110296737,110326475,110328017,110332685,110333283,110334143,110339403,110339721,110340994,110342448,110343434,110344971,110345382,110346118,110346621	0.989011
heart_left_ventricle_female_adult_53_years	chr5	133089588	133089693	133089676	+	RAMPAGE_only	29	36	137	6.658732	6.069610	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.992701
heart_left_ventricle_female_adult_53_years	chr19	11196140	11196224	11196140	-	High_confidence	25	25	131	6.367109	5.570867	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.908397
heart_left_ventricle_female_adult_53_years	chr4	47831339	47831357	47831339	+	High_confidence	14	21	33	1.603928	4.559546	chr4	47831064	47831545	LINE|RTE-BovB|MamRTE1	+	chr4	47831344	47896848	LOC101927179|NR_125881.1	+	47831344,47875205,47896541	47831508,47875331,47896848	0.636364
heart_left_ventricle_female_adult_53_years	chr5	997302	997319	997318	-	High_confidence	46	50	135	6.561524	5.427204	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.985185
heart_left_ventricle_female_adult_53_years	chrX	136168194	136168209	136168194	+	High_confidence	23	24	51	2.478798	4.961354	chrX	136168049	136168241	SINE|MIR|MIR	-	chrX	136168193	136208575	FHL1|ENST00000434885.5	+	136168193,136169906,136206406,136207015,136207791,136208454	136168267,136169980,136206588,136207190,136207961,136208575	0.960784
heart_left_ventricle_female_adult_53_years	chr11	112176365	112176373	112176365	+	High_confidence	209	226	560	27.218176	6.463155	chr11	112176309	112176508	LINE|L2|L2c	-	chr11	112176365	112218929	BCO2|NM_001256397.1	+	112176365,112179277,112193473,112193878,112194652,112199698,112200612,112202022,112213723,112214761,112216219,112217760	112176458,112179482,112193697,112193994,112194755,112199827,112200773,112202190,112213861,112214926,112216330,112218929	0.932143
heart_left_ventricle_female_adult_53_years	chr7	158863388	158863419	158863388	+	RAMPAGE_only	5	9	35	1.701136	4.513646	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.885714
heart_left_ventricle_female_adult_53_years	chr3	58136154	58136167	58136154	+	RAMPAGE_only	3	3	7	0.340227	2.807355	chr3	58136192	58136456	SINE|MIR|MIRb	+	chr3	58132077	58172251	FLNB|ENST00000481470.5	+	58132077,58134615,58135978,58138281,58142649,58143472,58145920,58146819,58148205,58148648,58149849,58150104,58153374,58154790,58155959,58159553,58163153,58168439,58170574	58132931,58134772,58136168,58138529,58142752,58143613,58146049,58146993,58148364,58148852,58150002,58150227,58153641,58154928,58156075,58159686,58163330,58169793,58172251	0.857143
heart_left_ventricle_female_adult_53_years	chr1	25820173	25820216	25820192	+	High_confidence	9	9	40	1.944155	4.475071	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	1.000000
heart_left_ventricle_female_adult_53_years	chr1	11058826	11058830	11058826	-	RAMPAGE_only	2	2	7	0.340227	2.521641	chr1	11058682	11058785	SINE|MIR|MIRc	-	chr1	11054588	11060024	SRM|ENST00000376957.6	-	11054588,11054961,11055780,11056010,11056603,11058799,11059224,11059776	11054885,11055084,11055926,11056094,11056757,11058892,11059345,11060024	1.000000
heart_left_ventricle_female_adult_53_years	chr7	131522978	131522979	131522978	-	RAMPAGE_only	14	14	14	0.680454	3.521641	chr7	131522684	131523276	LINE|L1|L1MB8	-	chr7	131500261	131556563	PODXL|ENST00000446198.5	-	131500261,131505867,131506259,131506578,131508950,131510827,131556259	131504508,131506035,131506321,131506726,131509585,131511433,131556563	0.571429
heart_left_ventricle_female_adult_53_years	chr4	158841765	158841813	158841812	+	High_confidence	80	80	181	8.797303	6.435554	chr4	158841566	158842041	LTR|ERVL|LTR75	+	chr4	158841760	158881172	STRG.7560.3	+	158841760,158851320,158859056,158859577,158861341,158861606,158868101,158870312,158879565	158841952,158851450,158859258,158859666,158861488,158861776,158869428,158870469,158881172	0.889503
heart_left_ventricle_female_adult_53_years	chr6	3083296	3083297	3083296	+	RAMPAGE_only	7	7	11	0.534643	3.121928	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3077597	3115179	STRG.9275.3	+	3077597,3082546,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3077935,3082660,3083381,3085408,3089657,3104315,3106051,3110955,3115179	0.909091
heart_left_ventricle_female_adult_53_years	chr20	50172542	50172559	50172544	+	High_confidence	2	3	7	0.340227	2.584963	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172549	50173370	LINC01273|ENST00000427333.5	+	50172549,50172922,50173201	50172788,50173017,50173370	0.571429
heart_left_ventricle_female_adult_53_years	chr16	11774341	11774342	11774341	-	High_confidence	5	5	8	0.388831	2.807355	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	0.875000
heart_left_ventricle_female_adult_53_years	chr2	36513696	36513759	36513758	+	High_confidence	13	16	40	1.944155	4.871928	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.800000
heart_left_ventricle_female_adult_53_years	chr1	20639925	20639976	20639954	+	RAMPAGE_only	13	13	55	2.673214	4.442280	chr1	20640002	20640112	LINE|L2|L2b	+	chr1	20638128	20651316	PINK1|ENST00000492302.1	+	20638128,20644489,20645559,20648504,20650433	20639992,20644672,20645723,20649231,20651316	0.963636
heart_left_ventricle_female_adult_53_years	chr11	113878754	113878755	113878754	-	RAMPAGE_only	14	14	14	0.680454	3.128085	chr11	113878589	113878950	LTR|ERVL-MaLR|THE1A	-	chr11	113797873	113875570	USP28|ENST00000003302.8	-	113797873,113801482,113803157,113803797,113804672,113804867,113806488,113808297,113809062,113812275,113813884,113815173,113817657,113823604,113827232,113829196,113830866,113831919,113833419,113834248,113840597,113841662,113852500,113854257,113875444	113799415,113801678,113803281,113803877,113804751,113805046,113806584,113808437,113809254,113812504,113813955,113815382,113817837,113823700,113827360,113829345,113830943,113831993,113833557,113834335,113840757,113841768,113852633,113854335,113875570	0.857143
heart_left_ventricle_female_adult_53_years	chr2	189571728	189571761	189571728	-	RAMPAGE_only	2	2	11	0.534643	3.459432	chr2	189571695	189571755	LINE|CR1|L3	+	chr2	189560589	189580811	SLC40A1|NM_014585.5	-	189560589,189563583,189565353,189571714,189572845,189575160,189579812,189580417	189562191,189564225,189565599,189571841,189572961,189575320,189579880,189580811	0.909091
heart_left_ventricle_female_adult_53_years	chr14	38948236	38948246	38948245	-	High_confidence	7	7	14	0.680454	3.546594	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	0.785714
heart_left_ventricle_female_adult_53_years	chr5	150640347	150640399	150640347	+	High_confidence	8	8	29	1.409513	3.948859	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	1.000000
heart_left_ventricle_female_adult_53_years	chr3	48979494	48979542	48979494	+	RAMPAGE_only	32	32	103	5.006200	5.414195	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	1.000000
heart_left_ventricle_female_adult_53_years	chrX	19349981	19350079	19350008	+	RAMPAGE_only	27	28	191	9.283342	6.202397	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19343932	19361685	PDHA1|ENST00000422285.6	+	19343932,19349311,19349936,19351280,19353081,19354490,19355348,19355685,19357651,19358915,19359488	19344094,19349371,19350110,19351407,19353173,19354583,19355504,19355757,19357719,19359024,19361685	0.994764
heart_left_ventricle_female_adult_53_years	chr20	50172594	50172595	50172594	+	High_confidence	8	9	11	0.534643	3.277613	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172589	50176671	LINC01273|ENST00000411453.2	+	50172589,50172922,50176280	50172788,50173017,50176671	0.636364
heart_left_ventricle_female_adult_53_years	chr5	41456608	41456622	41456608	-	RAMPAGE_only	14	14	24	1.166493	4.001629	chr5	41456571	41456939	LTR|ERVL-MaLR|MLT1A0	+	chr5	41306953	41510601	PLCXD3|ENST00000377801.7	-	41306953,41381825,41510423	41313770,41382534,41510601	1.000000
heart_left_ventricle_female_adult_53_years	chr16	67571179	67571206	67571205	+	High_confidence	2	3	8	0.388831	2.807355	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.875000
heart_left_ventricle_female_adult_53_years	chr17	43508342	43508362	43508342	+	RAMPAGE_only	9	10	16	0.777662	3.625000	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	1.000000
heart_left_ventricle_female_adult_53_years	chr18	31547342	31547347	31547346	+	RAMPAGE_only	7	9	14	0.680454	3.026987	chr18	31547394	31547703	SINE|Alu|AluSx1	+	chr18	31498042	31549008	DSG2|ENST00000261590.12	+	31498042,31518238,31519802,31520802,31521098,31522082,31524447,31524702,31530986,31535269,31536201,31538750,31541192,31542519,31545720	31498296,31518274,31519937,31520964,31521243,31522249,31524585,31524888,31531252,31535412,31536429,31538978,31541314,31542852,31549008	0.928571
heart_left_ventricle_female_adult_53_years	chr20	20088461	20088530	20088461	-	High_confidence	14	15	68	3.305064	5.090207	chr20	20088284	20088660	LTR|ERVL-MaLR|THE1C	-	chr20	20079469	20089233	STRG.25638.5	-	20079469,20088366,20088851	20080997,20088435,20089233	0.617647
heart_left_ventricle_female_adult_53_years	chr6	6739081	6739099	6739081	-	High_confidence	4	4	14	0.680454	3.180833	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6704670	6739030	AL031123.1|ENST00000648205.1	-	6704670,6710871,6711696,6738908	6705078,6711059,6711858,6739030	0.857143
heart_left_ventricle_female_adult_53_years	chr11	128565287	128565340	128565299	+	High_confidence	32	34	186	9.040323	6.240671	chr11	128565090	128565469	LTR|ERVL-MaLR|MLT1A1	+	chr11	128565294	128574495	STRG.17100.1	+	128565294,128565820,128574424	128565391,128566456,128574495	0.833333
heart_left_ventricle_female_adult_53_years	chr1	6820193	6820210	6820193	+	RAMPAGE_only	6	6	16	0.777662	2.973557	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.500000
heart_left_ventricle_female_adult_53_years	chr16	63618045	63618046	63618045	-	High_confidence	38	50	52	2.527402	5.086370	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.615385
heart_left_ventricle_female_adult_53_years	chr6	138833529	138833530	138833529	-	High_confidence	7	7	11	0.534643	2.845351	chr6	138833274	138833487	LINE|L1|L1ME4a	-	chr6	138817015	138833771	STRG.10480.2	-	138817015,138825094,138833474	138821427,138825579,138833771	0.818182
heart_left_ventricle_female_adult_53_years	chr6	138833744	138833780	138833765	-	High_confidence	16	16	62	3.013441	4.711079	chr6	138833577	138833832	SINE|Alu|AluSx	+	chr6	138804256	138833771	STRG.10480.1	-	138804256,138807001,138825094,138830545,138833474	138806155,138807066,138825579,138830685,138833771	1.000000
heart_left_ventricle_female_adult_53_years	chr8	93794804	93794824	93794823	+	High_confidence	41	47	125	6.075486	5.432488	chr8	93794713	93794824	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.976000
heart_left_ventricle_female_adult_53_years	chr7	113918672	113918714	113918672	-	High_confidence	6	6	18	0.874870	3.947703	chr7	113918643	113918708	DNA|hAT-Ac|OldhAT1	-	chr7	113879770	113918996	PPP1R3A|ENST00000284602.1	-	113879770,113882038,113882261,113918214,113918818	113880125,113882163,113882320,113918297,113918996	0.611111
heart_left_ventricle_female_adult_53_years	chr15	90762313	90762407	90762406	+	High_confidence	24	28	132	6.415713	5.909634	chr15	90762254	90762815	LINE|L2|L2b	-	chr15	90762395	90811327	BLM|ENST00000560136.5	+	90762395,90762965,90766909,90769132,90769437,90782821,90784920,90790648,90794166,90798189,90803520,90804166,90809136,90811204	90762422,90763157,90767023,90769231,90769586,90782928,90785081,90790844,90794357,90798337,90803720,90804359,90809259,90811327	0.833333
heart_left_ventricle_female_adult_53_years	chr12	104858837	104858838	104858837	+	High_confidence	130	136	183	8.894511	5.865103	chr12	104858784	104858889	DNA|TcMar-Tigger|UCON55	+	chr12	104858847	104870385	STRG.18215.1	+	104858847,104870161	104858907,104870385	0.792350
heart_left_ventricle_female_adult_53_years	chr2	3472506	3472526	3472516	+	High_confidence	2	3	12	0.583247	3.095795	chr2	3472565	3472771	LINE|L1|L1M4	+	chr2	3472420	3479567	TRAPPC12|ENST00000469400.1	+	3472420,3477694,3478845,3479218	3472602,3477795,3478933,3479567	0.916667
heart_left_ventricle_female_adult_53_years	chr3	37044665	37044685	37044684	+	RAMPAGE_only	4	6	10	0.486039	2.503258	chr3	37044683	37045702	LINE|L1|L1M5	-	chr3	36993803	37050844	MLH1|ENST00000435176.5	+	36993803,36996618,37000954,37004400,37006990,37008813,37011819,37012010,37014431,37017505,37020309,37025636,37028783,37040185,37042267,37047518,37048516,37048903,37050485	36993890,36996709,37001048,37004474,37007063,37008905,37011862,37012099,37014544,37017599,37020463,37026007,37028932,37040294,37042331,37047683,37048609,37049017,37050844	0.900000
heart_left_ventricle_female_adult_53_years	chr4	143350380	143350462	143350400	+	RAMPAGE_only	20	23	84	4.082726	4.988586	chr4	143350396	143350702	SINE|Alu|AluSp	+	chr4	143337177	143438041	GAB1|ENST00000514639.5	+	143337177,143415476,143433490,143434087,143437998	143337260,143415771,143433716,143434168,143438041	0.916667
heart_left_ventricle_female_adult_53_years	chr2	55268657	55268688	55268657	-	High_confidence	3	3	11	0.534643	2.646439	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	0.909091
heart_left_ventricle_female_adult_53_years	chr16	20674403	20674405	20674404	+	High_confidence	4	6	8	0.388831	2.750000	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	1.000000
heart_left_ventricle_female_adult_53_years	chr1	21551233	21551273	21551272	+	High_confidence	9	9	42	2.041363	4.072574	chr1	21551216	21551436	LINE|L2|L2c	-	chr1	21551278	21578012	ALPL|ENST00000374832.5	+	21551278,21553977,21560625,21561096,21563109,21564040,21568103,21570304,21573664,21575732,21576521,21577382	21551428,21554142,21560745,21561212,21563284,21564216,21568247,21570374,21573799,21575924,21576641,21578012	0.952381
heart_left_ventricle_female_adult_53_years	chr17	44831063	44831064	44831063	-	High_confidence	6	6	9	0.437435	2.750000	chr17	44831052	44831164	SINE|MIR|MIRc	-	chr17	44805506	44830816	GJC1|ENST00000591424.5	-	44805506,44807393,44830637	44805837,44807469,44830816	0.888889
heart_left_ventricle_female_adult_53_years	chr14	73366906	73366945	73366906	-	High_confidence	3	3	13	0.631851	3.238901	chr14	73366875	73367023	SINE|MIR|MIRb	+	chr14	73276548	73366920	NUMB|ENST00000560335.5	-	73276548,73282358,73287109,73292733,73297210,73316389,73323129,73355625,73366896	73277293,73282505,73287314,73292874,73297285,73316422,73323204,73355766,73366920	1.000000
heart_left_ventricle_female_adult_53_years	chr4	64279449	64279764	64279449	-	RAMPAGE_only	137	155	811	39.417751	6.208740	chr4	64279257	64279568	SINE|Alu|AluJr	-	chr4	64277701	64409398	STRG.6936.1	-	64277701,64281040,64281473,64289709,64299973,64305165,64309825,64314647,64322688,64328511,64375171,64409117	64280199,64281086,64281559,64289767,64300017,64305238,64309931,64314763,64322792,64328556,64375223,64409398	1.000000
heart_left_ventricle_female_adult_53_years	chr1	232553338	232553343	232553338	-	RAMPAGE_only	5	5	9	0.437435	2.947703	chr1	232552807	232553528	LTR|ERV1|LTR1F1	-	chr1	232397964	232561558	SIPA1L2|ENST00000366630.5	-	232397964,232402391,232403447,232404124,232415493,232425588,232428410,232432246,232439107,232441290,232441767,232443601,232445528,232460886,232464839,232471370,232479626,232483791,232490873,232493526,232513856,232561468	232399273,232402473,232403571,232404178,232415625,232425808,232428564,232432471,232439496,232441394,232441868,232443685,232445786,232461161,232465416,232471528,232479730,232483966,232491062,232493660,232515608,232561558	0.555556
heart_left_ventricle_female_adult_53_years	chr15	62894572	62894581	62894572	+	RAMPAGE_only	4	5	9	0.437435	2.750000	chr15	62894534	62894826	SINE|Alu|AluSx3	+	chr15	62895811	62899543	AC103740.2|ENST00000557900.1	+	62895811,62898650	62896143,62899543	0.777778
heart_left_ventricle_female_adult_53_years	chr2	28165292	28165304	28165303	+	RAMPAGE_only	13	17	28	1.360909	3.365637	chr2	28165020	28165437	LINE|L2|L2b	-	chr2	27890792	28338901	BABAM2|ENST00000361704.6	+	27890792,27894532,27929831,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28310081,28338449	27890842,27894684,27929908,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28310153,28338901	0.964286
heart_left_ventricle_female_adult_53_years	chr3	40290554	40290568	40290561	-	RAMPAGE_only	9	10	23	1.117889	3.936180	chr3	40290526	40291622	LTR|ERV1|LTR27E	-	chr3	40225147	40225631	STRG.4889.1	-	40225147	40225631	0.695652
heart_left_ventricle_female_adult_53_years	chr14	31577923	31577948	31577923	+	High_confidence	6	6	20	0.972078	3.281373	chr14	31577911	31578038	LINE|L2|L2c	+	chr14	31577929	31860273	STRG.19246.3	+	31577929,31599288,31673354,31673483,31787779,31826628,31846470,31850118,31859117	31578025,31599379,31673394,31673574,31787873,31826714,31846591,31850201,31860273	0.950000
heart_left_ventricle_female_adult_53_years	chr10	70425069	70425278	70425230	+	RAMPAGE_only	31	31	266	12.928633	5.842086	chr10	70424911	70425430	LTR|ERVL-MaLR|MLT1F1	-	chr10	70404378	70428618	EIF4EBP2|ENST00000373218.4	+	70404378,70419913,70421715	70404546,70420099,70428618	0.984962
heart_left_ventricle_female_adult_53_years	chr11	2375370	2375404	2375372	-	High_confidence	74	110	242	11.762140	5.472056	chr11	2375301	2375633	LINE|L2|L2b	+	chr11	2370906	2375413	STRG.15828.1	-	2370906,2375298	2373245,2375413	0.995868
heart_left_ventricle_female_adult_53_years	chr6	139289477	139289480	139289479	-	RAMPAGE_only	4	7	8	0.388831	2.807355	chr6	139289069	139289527	LTR|ERV1|LTR2	+	chr6	139240060	139292071	TXLNB|NM_153235.3	-	139240060,139244594,139247816,139255563,139260317,139262578,139270455,139276829,139288475,139291920	139243314,139244690,139247909,139255638,139260437,139262773,139270626,139276921,139288913,139292071	0.875000
heart_left_ventricle_female_adult_53_years	chr11	73468783	73468784	73468783	-	High_confidence	6	6	7	0.340227	2.584963	chr11	73468774	73468895	SINE|MIR|MIR3	+	chr11	73430162	73468492	FAM168A|ENST00000432223.2	-	73430162,73468404	73430770,73468492	0.571429
heart_left_ventricle_female_adult_53_years	chr11	17282793	17282845	17282813	+	RAMPAGE_only	2	2	10	0.486039	2.947703	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.500000
heart_left_ventricle_female_adult_53_years	chr15	36594721	36594731	36594730	+	High_confidence	6	6	13	0.631851	3.392747	chr15	36594706	36594759	SINE|tRNA|LFSINE_Vert	+	chr15	36594868	36808489	C15orf41|NM_001290232.1	+	36594868,36644277,36645222,36654097,36657832,36691684,36692125,36697322,36709222,36709855,36808323	36594918,36644323,36645287,36654158,36657905,36691764,36692175,36697390,36709288,36709961,36808489	1.000000
heart_left_ventricle_female_adult_53_years	chr9	127914661	127914672	127914661	-	High_confidence	4	4	9	0.437435	2.500000	chr9	127914519	127914632	SINE|MIR|MIRb	-	chr9	127908317	127914762	ST6GALNAC4|ENST00000495983.1	-	127908317,127909950,127912267,127914655	127908581,127910528,127912680,127914762	0.888889
heart_left_ventricle_female_adult_53_years	chr8	18076060	18076061	18076060	-	High_confidence	88	93	125	6.075486	6.047076	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18056461	18076037	ASAH1|ENST00000637922.1	-	18056461,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18067219,18069791,18071299,18075540,18075922	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18064531,18067298,18069878,18071390,18075587,18076037	0.672000
heart_left_ventricle_female_adult_53_years	chr11	47351783	47351809	47351783	-	High_confidence	29	29	61	2.964837	5.340740	chr11	47351577	47351776	SINE|MIR|MIRb	-	chr11	47331396	47352702	MYBPC3|ENST00000545968.5	-	47331396,47331844,47332071,47332565,47332813,47333193,47333556,47333921,47335041,47335876,47337390,47337689,47338519,47339323,47339650,47341002,47341137,47341990,47342577,47342829,47343020,47343259,47343491,47346206,47346626,47347026,47347425,47347650,47347856,47348423,47349773,47350013,47350501,47351238,47352622	47331716,47331881,47332258,47332702,47332973,47333333,47333752,47334010,47335209,47336011,47337579,47337794,47338679,47339404,47339790,47341032,47341244,47342156,47342744,47342935,47343145,47343262,47343624,47346370,47346644,47347029,47347479,47347680,47347905,47348541,47349922,47350112,47350615,47351505,47352702	0.786885
heart_left_ventricle_female_adult_53_years	chr8	129752862	129752885	129752884	-	High_confidence	3	3	8	0.388831	2.750000	chr8	129752564	129757710	LINE|L1|L1MA2	+	chr8	129748195	129752886	GSDMC|ENST00000522273.5	-	129748195,129749451,129749989,129750430,129751541,129751861,129752105,129752697	129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752886	1.000000
heart_left_ventricle_female_adult_53_years	chr5	66380760	66380766	66380765	-	RAMPAGE_only	3	3	7	0.340227	2.521641	chr5	66380126	66382750	LINE|L1|L1PB2	+	chr5	66347888	66440513	STRG.8110.1	-	66347888,66440146	66351228,66440513	0.571429
heart_left_ventricle_female_adult_53_years	chr2	219631638	219631713	219631638	+	High_confidence	34	34	195	9.477758	6.152937	chr2	219631665	219631820	SINE|MIR|MIRc	+	chr2	219632058	219637795	SLC4A3|ENST00000416910.1	+	219632058,219632261,219632873,219633273,219633865,219634419,219635270,219635672,219636301,219636679,219637580	219632116,219632442,219633009,219633457,219633979,219634604,219635496,219635891,219636450,219636874,219637795	0.902564
heart_left_ventricle_female_adult_53_years	chr6	130894354	130894366	130894354	-	RAMPAGE_only	2	3	7	0.340227	2.584963	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	0.857143
heart_left_ventricle_female_adult_53_years	chr15	92678210	92678222	92678210	-	RAMPAGE_only	9	9	26	1.263701	3.833270	chr15	92678051	92678466	LTR|ERVL-MaLR|MSTC	-	chr15	92619182	92668043	FAM174B|ENST00000557480.5	-	92619182,92630213,92667897	92619459,92630345,92668043	0.730769
heart_left_ventricle_female_adult_53_years	chr5	140700445	140700452	140700451	+	High_confidence	217	222	725	35.237817	5.278101	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.975172
heart_left_ventricle_female_adult_53_years	chr17	20921027	20921028	20921027	+	High_confidence	7	7	10	0.486039	2.725481	chr17	20920944	20921033	LINE|L2|L2a	+	chr17	20921044	20930046	CCDC144NL-AS1|ENST00000443508.6	+	20921044,20924358,20929430	20921169,20924833,20930046	0.900000
heart_left_ventricle_female_adult_53_years	chr5	95509593	95509601	95509600	-	RAMPAGE_only	4	4	8	0.388831	2.807355	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95502902	95516674	TTC37|ENST00000508181.5	-	95502902,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524	95503003,95503938,95506992,95509687,95512618,95513645,95514923,95516409,95516674	0.500000
heart_left_ventricle_female_adult_53_years	chr8	85378112	85378113	85378112	-	High_confidence	41	42	42	2.041363	3.807222	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.976190
heart_left_ventricle_female_adult_53_years	chr3	188885882	188885883	188885882	+	RAMPAGE_only	42	43	45	2.187175	4.757546	chr3	188885494	188885956	LINE|L1|L1PA3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.933333
heart_left_ventricle_female_adult_53_years	chr2	26252047	26252048	26252047	+	RAMPAGE_only	6	6	8	0.388831	2.521641	chr2	26251843	26252333	LTR|ERVL-MaLR|MLT1F	-	chr2	26245129	26269997	HADHB|ENST00000412805.5	+	26245129,26254246,26254429,26263379,26269952	26245441,26254318,26254474,26263479,26269997	0.875000
heart_left_ventricle_female_adult_53_years	chr1	231854123	231854145	231854144	+	RAMPAGE_only	7	8	16	0.777662	3.506891	chr1	231854145	231854317	SINE|MIR|MIRb	+	chr1	231818904	232009022	DISC1|ENST00000427560.1	+	231818904,231958827,232008784	231819150,231958888,232009022	0.687500
heart_left_ventricle_female_adult_53_years	chr19	47779747	47779769	47779768	+	High_confidence	6	6	13	0.631851	2.855389	chr19	47779522	47779824	SINE|Alu|AluJo	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.923077
heart_left_ventricle_female_adult_53_years	chr2	201122588	201122590	201122589	+	High_confidence	15	19	27	1.312305	4.208410	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201122476	201130053	CFLAR|ENST00000425030.1	+	201122476,201129728	201122747,201130053	0.666667
heart_left_ventricle_female_adult_53_years	chr19	40608591	40608592	40608591	+	RAMPAGE_only	8	8	9	0.437435	2.750000	chr19	40608638	40608924	SINE|Alu|AluSq2	+	chr19	40610212	40611922	LTBP4|ENST00000598256.1	+	40610212,40611151,40611858	40610657,40611394,40611922	0.777778
heart_left_ventricle_female_adult_53_years	chr6	107872864	107872878	107872864	-	RAMPAGE_only	2	2	10	0.486039	2.503258	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.900000
heart_left_ventricle_female_adult_53_years	chr22	46575623	46575641	46575640	+	High_confidence	6	6	12	0.583247	3.277613	chr22	46575415	46575643	LINE|L2|L2c	-	chr22	46575650	46637958	STRG.27055.4	+	46575650,46626750,46637839	46575974,46626961,46637958	0.833333
heart_left_ventricle_female_adult_53_years	chr7	103353933	103353956	103353933	+	High_confidence	4	4	13	0.631851	3.546594	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.769231
heart_left_ventricle_female_adult_53_years	chr16	58435796	58435797	58435796	+	RAMPAGE_only	10	10	11	0.534643	2.846439	chr16	58435719	58435927	LTR|ERVL|LTR33	-	chr16	58422673	58441040	STRG.21706.3	+	58422673,58433809,58435691,58437155	58423348,58433948,58435823,58441040	0.727273
heart_left_ventricle_female_adult_53_years	chr5	41478893	41478894	41478893	-	RAMPAGE_only	5	5	7	0.340227	2.521641	chr5	41478696	41479079	LTR|ERVL-MaLR|MSTA	-	chr5	41306953	41510601	PLCXD3|ENST00000377801.7	-	41306953,41381825,41510423	41313770,41382534,41510601	0.714286
heart_left_ventricle_female_adult_53_years	chr15	34988764	34988768	34988764	-	High_confidence	9	9	16	0.777662	3.500000	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.812500
heart_left_ventricle_female_adult_53_years	chr14	102235458	102235481	102235480	-	High_confidence	10	10	26	1.263701	4.257756	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.923077
heart_left_ventricle_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	142	145	146	7.096167	4.610472	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.952055
heart_left_ventricle_female_adult_53_years	chr2	219419806	219419829	219419806	+	High_confidence	4	4	10	0.486039	3.121928	chr2	219419757	219419880	LINE|L2|L2b	-	chr2	219420044	219423820	DES|ENST00000477226.5	+	219420044,219420250,219420494,219420827,219421339,219423776	219420155,219420346,219420656,219420953,219421560,219423820	0.900000
heart_left_ventricle_female_adult_53_years	chr11	65181215	65181223	65181215	+	High_confidence	2	2	7	0.340227	2.584963	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.857143
heart_left_ventricle_female_adult_53_years	chr6	34762037	34762051	34762037	+	RAMPAGE_only	9	9	26	1.263701	4.053509	chr6	34762020	34762316	SINE|Alu|AluJb	+	chr6	34757911	34773532	SNRPC|ENST00000474635.1	+	34757911,34762594,34767907,34770290,34772930,34773445	34757954,34762703,34767997,34770395,34773007,34773532	0.846154
heart_left_ventricle_female_adult_53_years	chr7	80524846	80524860	80524846	+	RAMPAGE_only	10	12	32	1.555324	4.573557	chr7	80524761	80524908	LTR|ERV1|LTR38B	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.781250
heart_left_ventricle_female_adult_53_years	chr6	123439083	123439118	123439083	-	RAMPAGE_only	9	9	54	2.624610	5.356558	chr6	123439047	123439232	SINE|MIR|MIRb	+	chr6	123216713	123636909	STRG.10399.2	-	123216713,123221486,123224092,123252411,123255080,123255866,123259623,123260611,123265317,123267706,123269848,123271138,123272963,123273336,123274640,123278317,123279055,123316456,123331878,123337618,123352538,123366134,123375604,123377715,123377865,123381369,123382117,123388521,123393623,123438062,123438943,123464905,123497192,123498448,123512302,123516140,123530505,123547339,123548453,123570922,123636753	123218740,123221522,123224131,123252435,123255125,123255902,123259662,123260638,123265338,123267751,123269866,123271186,123273011,123273363,123274670,123278347,123279082,123316495,123331929,123337669,123352586,123366182,123375631,123377742,123377898,123381390,123382147,123388551,123393677,123438122,123439003,123464983,123497252,123503901,123512362,123516206,123530565,123547372,123548612,123571132,123636909	0.796296
heart_left_ventricle_female_adult_53_years	chr17	59620040	59620052	59620051	+	High_confidence	8	8	20	0.972078	3.826875	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.850000
heart_left_ventricle_female_adult_53_years	chr2	63827822	63827823	63827822	-	RAMPAGE_only	134	134	146	7.096167	6.100675	chr2	63827753	63828092	LTR|ERVL?|LTR55	-	chr2	63677730	63783246	STRG.3197.8	-	63677730,63711496,63753856,63783128	63678253,63711591,63753970,63783246	0.595890
heart_left_ventricle_female_adult_53_years	chr1	171517800	171517814	171517813	+	RAMPAGE_only	6	6	11	0.534643	3.095795	chr1	171517862	171517949	DNA|hAT-Charlie|Charlie4a	+	chr1	171512031	171593511	PRRC2C|ENST00000426496.6	+	171512031,171513000,171514535,171515733,171517590,171522176,171523220,171523434,171524820,171527790,171532342,171535427,171536028,171537262,171539970,171545478,171550085,171557239,171561017,171566232,171566591,171568246,171571319,171574926,171577433,171579353,171579827,171583955,171584418,171587002,171587647,171588378,171591586	171512200,171513172,171514645,171515859,171517814,171522259,171523354,171523522,171524965,171527844,171532961,171535597,171536278,171537473,171542229,171545687,171550240,171558143,171561103,171566421,171566843,171568339,171571421,171575128,171577637,171579466,171579964,171584187,171584526,171587221,171587751,171588505,171593511	1.000000
heart_left_ventricle_female_adult_53_years	chr14	106846262	106846266	106846262	-	High_confidence	9	9	19	0.923474	3.836592	chr14	106845982	106849095	LINE|L1|L1PBb	-	chr14	106845800	106846248	STRG.19950.1	-	106845800	106846248	0.842105
heart_left_ventricle_female_adult_53_years	chr11	77175226	77175303	77175302	+	High_confidence	6	6	24	1.166493	4.334963	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174780	77183123	STRG.16663.1	+	77174780,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183123	0.958333
heart_left_ventricle_female_adult_53_years	chr22	17917780	17917783	17917782	-	RAMPAGE_only	4	7	8	0.388831	2.521641	chr22	17917754	17917859	LINE|L2|L2a	+	chr22	17834334	17906886	MICAL3|NM_001122731.2	-	17834334,17841821,17864898,17865923,17871836,17885877,17887169,17887322,17889033,17891484,17893807,17895283,17896245,17896723,17899447,17900841,17901877,17902630,17904631,17906548	17834549,17842017,17864986,17866012,17872023,17886051,17887232,17887435,17889230,17891632,17893904,17895410,17896361,17896981,17899548,17900997,17901979,17902747,17904839,17906886	0.500000
heart_left_ventricle_female_adult_53_years	chr12	19037007	19037031	19037030	+	High_confidence	100	120	200	9.720777	5.926154	chr12	19036914	19037352	LTR|ERV1|LOR1b	-	chr12	19037017	19048825	STRG.17450.1	+	19037017,19045404	19037100,19048825	0.670000
heart_left_ventricle_female_adult_53_years	chr10	70324458	70324480	70324458	-	High_confidence	8	8	27	1.312305	3.642371	chr10	70324412	70324716	LTR|ERVL-MaLR|MLT1M	+	chr10	70298975	70324467	STRG.15142.6	-	70298975,70323862,70324219	70301508,70324030,70324467	0.962963
heart_left_ventricle_female_adult_53_years	chr6	2949583	2949584	2949583	-	High_confidence	22	22	28	1.360909	4.324863	chr6	2949217	2950248	LINE|L2|L2a	+	chr6	2948195	2949661	STRG.9274.13	-	2948195,2948913,2949429	2948699,2949069,2949661	1.000000
heart_left_ventricle_female_adult_53_years	chr1	202582523	202582564	202582563	+	RAMPAGE_only	5	8	20	0.972078	3.681881	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.950000
heart_left_ventricle_female_adult_53_years	chr2	182030817	182030862	182030817	+	High_confidence	2	2	8	0.388831	2.750000	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.750000
heart_left_ventricle_female_adult_53_years	chr20	64265511	64265536	64265524	+	High_confidence	3	5	12	0.583247	3.459432	chr20	64265443	64265603	SINE|MIR|MIR	-	chr20	64265511	64273545	PCMTD2|ENST00000609818.1	+	64265511,64267886,64273220	64265613,64268010,64273545	0.833333
heart_left_ventricle_female_adult_53_years	chr15	57602713	57602714	57602713	+	RAMPAGE_only	13	13	13	0.631851	3.392747	chr15	57602679	57602910	SINE|MIR|MIR	+	chr15	57592032	57650062	GCOM1|ENST00000649429.1	+	57592032,57604268,57618032,57621607,57625778,57629701,57632433,57633612,57637694,57639439,57646136	57592109,57604355,57618188,57621700,57625892,57629854,57632559,57633741,57637774,57639545,57650062	1.000000
heart_left_ventricle_female_adult_53_years	chrX	46907902	46907930	46907902	-	RAMPAGE_only	6	6	13	0.631851	3.418296	chrX	46907356	46907892	LTR|ERVL|MER68	-	chrX	46887416	46899704	LINC01545|NR_046101.1	-	46887416,46890292,46894523,46899603	46887692,46890379,46894581,46899704	0.615385
heart_left_ventricle_female_adult_53_years	chr5	167934754	167934757	167934756	+	High_confidence	9	12	15	0.729058	2.973557	chr5	167934647	167934759	DNA|hAT-Ac|OldhAT1	-	chr5	167934861	168047462	TENM2|ENST00000518693.1	+	167934861,167952587,167992943,168047426	167934920,167952822,167993182,168047462	0.933333
heart_left_ventricle_female_adult_53_years	chr6	28354137	28354144	28354143	-	High_confidence	3	3	8	0.388831	2.500000	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329373	28354186	ZSCAN31|ENST00000446222.5	-	28329373,28336789,28353861,28354130	28329778,28336943,28353952,28354186	0.625000
heart_left_ventricle_female_adult_53_years	chr1	231847665	231847666	231847665	-	High_confidence	1097	1116	1559	75.773457	7.106825	chr1	231847541	231847935	LINE|L2|L2a	+	chr1	231809752	231847793	STRG.2520.2	-	231809752,231822679,231847518	231814291,231822834,231847793	0.871713
heart_left_ventricle_female_adult_53_years	chr3	52615426	52615427	52615426	-	High_confidence	11	12	16	0.777662	3.750000	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	1.000000
heart_left_ventricle_female_adult_53_years	chr3	57267742	57267773	57267772	+	RAMPAGE_only	17	17	32	1.555324	3.856565	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.781250
heart_left_ventricle_female_adult_53_years	chr16	23595453	23595480	23595453	-	High_confidence	14	15	25	1.215097	3.973661	chr16	23595357	23595584	DNA|TcMar-Tigger|MER8	-	chr16	23581013	23596277	NDUFAB1|ENST00000562133.5	-	23581013,23582275,23585335,23596122	23581173,23582375,23585423,23596277	0.960000
heart_left_ventricle_female_adult_53_years	chr2	26779915	26779975	26779915	+	RAMPAGE_only	2	2	9	0.437435	2.947703	chr2	26779815	26780104	SINE|Alu|AluJr	-	chr2	26764324	26781147	SLC35F6|ENST00000414029.1	+	26764324,26774250,26775463,26776371,26778041	26764426,26774323,26775676,26776482,26781147	1.000000
heart_left_ventricle_female_adult_53_years	chr1	231422742	231422749	231422748	-	RAMPAGE_only	9	9	20	0.972078	2.784184	chr1	231422714	231422871	SINE|MIR|MIRb	-	chr1	231363750	231425044	EGLN1|ENST00000366641.3	-	231363750,231367568,231370561,231373979,231420997	231366475,231367636,231370698,231374099,231425044	1.000000
heart_left_ventricle_female_adult_53_years	chr19	12773701	12773746	12773701	-	High_confidence	10	11	26	1.263701	4.220176	chr19	12773556	12774082	LINE|L2|L2a	+	chr19	12771394	12773253	HOOK2|ENST00000588052.5	-	12771394,12772189,12772612,12772779,12772993	12771477,12772252,12772680,12772912,12773253	0.769231
heart_left_ventricle_female_adult_53_years	chr1	20685297	20685332	20685297	-	High_confidence	4	6	18	0.874870	3.690117	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.777778
heart_left_ventricle_female_adult_53_years	chr8	99893471	99893492	99893471	-	High_confidence	5	5	13	0.631851	2.815072	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	1.000000
heart_left_ventricle_female_adult_53_years	chr22	50576071	50576076	50576071	-	High_confidence	7	7	13	0.631851	2.918296	chr22	50576043	50576136	LINE|RTE-BovB|MamRTE1	-	chr22	50572874	50576064	CPT1B|ENST00000423069.1	-	50572874,50573519,50573807,50574334,50574492,50576034	50573060,50573715,50573921,50574419,50574600,50576064	0.769231
heart_left_ventricle_female_adult_53_years	chr1	201365894	201365919	201365894	-	RAMPAGE_only	5	5	11	0.534643	2.913977	chr1	201365815	201366035	SINE|MIR|MIRc	-	chr1	201360826	201366966	TNNT2|ENST00000515042.5	-	201360826,201361912,201362385,201363295,201364297,201365190,201365609,201366837	201361369,201362022,201362394,201363406,201364375,201365307,201365670,201366966	1.000000
heart_left_ventricle_female_adult_53_years	chr3	114693548	114693563	114693548	-	RAMPAGE_only	4	4	8	0.388831	2.750000	chr3	114693457	114693551	SINE|MIR|MIR	+	chr3	114338683	114758940	ZBTB20|ENST00000464560.5	-	114338683,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114758940	1.000000
heart_left_ventricle_female_adult_53_years	chr3	179325182	179325201	179325200	+	High_confidence	3	5	6	0.291623	2.584963	chr3	179325011	179325319	SINE|Alu|AluSp	-	chr3	179325152	179333829	ZNF639|ENST00000466264.5	+	179325152,179327560,179328282,179329617,179332988,179333268	179325322,179327631,179328351,179329728,179333123,179333829	1.000000
heart_left_ventricle_female_adult_53_years	chr6	16277892	16277924	16277904	+	RAMPAGE_only	6	9	33	1.603928	4.538910	chr6	16277565	16277912	LINE|L2|L2b	-	chr6	16289517	16295544	GMPR|ENST00000544145.1	+	16289517,16290461,16295005	16289568,16290621,16295544	0.787879
heart_left_ventricle_female_adult_53_years	chr5	150125472	150125534	150125472	-	RAMPAGE_only	4	4	23	1.117889	4.262692	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	1.000000
heart_left_ventricle_female_adult_53_years	chr2	143070964	143070965	143070964	+	RAMPAGE_only	4	4	6	0.291623	2.584963	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143091361	143238352	ARHGAP15|ENST00000409869.5	+	143091361,143092156,143155476,143202133,143216383,143228580,143235945	143091422,143092258,143155655,143202202,143216445,143228668,143238352	1.000000
heart_left_ventricle_female_adult_53_years	chr11	72111440	72111467	72111466	-	High_confidence	7	7	16	0.777662	3.773557	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72107158	72111443	ANAPC15|ENST00000543050.5	-	72107158,72110087,72110543,72111156,72111411	72107605,72110225,72110603,72111286,72111443	0.562500
heart_left_ventricle_female_adult_53_years	chr3	131804690	131804705	131804699	-	High_confidence	7	7	27	1.312305	4.003856	chr3	131804531	131804997	LTR|ERVL-MaLR|MLT1H	+	chr3	131534736	131804693	STRG.5771.1	-	131534736,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131804557	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131804693	0.888889
heart_left_ventricle_female_adult_53_years	chr12	53464815	53464834	53464833	+	RAMPAGE_only	7	7	17	0.826266	3.250000	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.705882
heart_left_ventricle_female_adult_53_years	chr8	17935206	17935214	17935210	+	RAMPAGE_only	3	3	9	0.437435	2.500000	chr8	17934728	17935264	LTR|Gypsy?|LTR85a	-	chr8	17937175	17939016	PCM1|ENST00000518985.1	+	17937175,17938838	17937379,17939016	0.888889
heart_left_ventricle_female_adult_53_years	chr9	92536601	92536602	92536601	-	High_confidence	10	10	10	0.486039	2.646439	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.700000
heart_left_ventricle_female_adult_53_years	chr11	128565238	128565239	128565238	+	High_confidence	10	10	11	0.534643	3.121928	chr11	128565090	128565469	LTR|ERVL-MaLR|MLT1A1	+	chr11	128565294	128574495	STRG.17100.1	+	128565294,128565820,128574424	128565391,128566456,128574495	0.636364
heart_left_ventricle_female_adult_53_years	chr1	166850282	166850307	166850282	+	RAMPAGE_only	4	4	16	0.777662	3.625000	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
heart_left_ventricle_female_adult_53_years	chr20	44532569	44532570	44532569	+	High_confidence	27	29	32	1.555324	4.760648	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.937500
heart_left_ventricle_female_adult_53_years	chr8	93698580	93698581	93698580	+	High_confidence	26	28	35	1.701136	4.476064	chr8	93698481	93698872	LTR|ERVL-MaLR|MLT1H2	+	chr8	93698560	93709779	FAM92A|ENST00000523475.5	+	93698560,93701223,93703619,93704908,93708010,93709770	93698747,93701458,93703688,93705010,93708016,93709779	0.942857
heart_left_ventricle_female_adult_53_years	chr8	30812437	30812470	30812469	-	High_confidence	6	6	23	1.117889	3.820889	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30743346	30812597	STRG.12501.1	-	30743346,30774678,30786210,30791196,30793916,30794191,30797580,30799545,30812319	30744542,30774930,30786307,30791315,30794078,30794281,30797754,30799755,30812597	0.913043
heart_left_ventricle_female_adult_53_years	chr17	16065484	16065500	16065484	-	High_confidence	3	3	7	0.340227	2.521641	chr17	16065394	16065440	LINE|L2|L2b	-	chr17	16061866	16065885	NCOR1|ENST00000584872.1	-	16061866,16062104,16064067,16064869,16065484	16061894,16062270,16064187,16065019,16065885	0.857143
heart_left_ventricle_female_adult_53_years	chr5	150651135	150651790	150651316	+	RAMPAGE_only	40	54	997	48.458073	6.788254	chr5	150651250	150651383	SINE|MIR|MIR3	+	chr5	150640677	150652337	SYNPO|ENST00000519664.1	+	150640677,150647943	150640854,150652337	1.000000
heart_left_ventricle_female_adult_53_years	chr2	178874960	178874974	178874960	-	RAMPAGE_only	17	17	39	1.895552	4.631305	chr2	178874815	178875282	LINE|L1|L1MEg1	+	chr2	178835755	178884951	CCDC141|ENST00000343876.6	-	178835755,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900	178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178884951	0.820513
heart_left_ventricle_female_adult_53_years	chr5	176943338	176943372	176943338	-	RAMPAGE_only	6	6	10	0.486039	2.846439	chr5	176943235	176943320	DNA|hAT-Charlie|Charlie10	-	chr5	176905065	176970793	UIMC1|ENST00000510698.2	-	176905065,176906010,176907113,176908522,176911310,176943334,176951473,176955958,176958092,176969600,176970741	176905492,176906047,176907177,176908694,176911389,176943488,176951577,176956035,176958154,176969706,176970793	1.000000
heart_left_ventricle_female_adult_53_years	chr15	57468882	57468900	57468899	+	RAMPAGE_only	3	3	6	0.291623	2.584963	chr15	57468704	57469072	LTR|ERVL-MaLR|THE1B	+	chr15	57437978	57550717	STRG.20407.3	+	57437978,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547351	57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550717	1.000000
heart_left_ventricle_female_adult_53_years	chr9	38650188	38650291	38650221	+	High_confidence	34	34	92	4.471557	4.800554	chr9	38650217	38650807	LINE|L2|L2b	-	chr9	38650256	38662717	AL591543.1|ENST00000642095.1	+	38650256,38658688	38650376,38662717	0.989130
heart_left_ventricle_female_adult_53_years	chr15	82143715	82143767	82143729	-	High_confidence	21	21	60	2.916233	5.280226	chr15	82143509	82143849	LINE|CR1|L3	+	chr15	82130232	82143764	STRG.20719.3	-	82130232,82138657,82143523	82130561,82138842,82143764	0.966667
heart_left_ventricle_female_adult_53_years	chr19	47780107	47780108	47780107	+	High_confidence	31	38	44	2.138571	4.704880	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.977273
heart_left_ventricle_female_adult_53_years	chr8	56559496	56559497	56559496	-	High_confidence	15	15	15	0.729058	3.640224	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.600000
heart_left_ventricle_female_adult_53_years	chr14	93183626	93183671	93183626	-	RAMPAGE_only	9	9	36	1.749740	4.278585	chr14	93183223	93184271	LTR|Gypsy|MamGyp-int	-	chr14	93182195	93184904	MOAP1|NM_022151.4	-	93182195,93184558,93184809	93184362,93184713,93184904	0.972222
heart_left_ventricle_female_adult_53_years	chr8	123413070	123413120	123413102	-	RAMPAGE_only	6	6	30	1.458117	4.481728	chr8	123412758	123413395	LTR|ERV1|MER67B	+	chr8	123320501	123416350	ATAD2|ENST00000521903.5	-	123320501,123322937,123325892,123328189,123333877,123334199,123336372,123337624,123339310,123344883,123346085,123346617,123347091,123348186,123349284,123356388,123357561,123359220,123359576,123361538,123369057,123369820,123370902,123371235,123371669,123372636,123380528,123400742,123416247	123321175,123323066,123326026,123328579,123334021,123334322,123336532,123337821,123339446,123345069,123346272,123346750,123347406,123348273,123349421,123356477,123357736,123359336,123359685,123361646,123369175,123370024,123370990,123371338,123371835,123372686,123380677,123401175,123416350	0.966667
heart_left_ventricle_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	341	361	880	42.771419	5.936981	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.977273
heart_left_ventricle_female_adult_53_years	chr5	109383431	109383434	109383431	-	High_confidence	4	4	11	0.534643	3.121928	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.909091
heart_left_ventricle_female_adult_53_years	chr20	3795750	3795789	3795782	+	High_confidence	6	10	39	1.895552	4.831075	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.948718
heart_left_ventricle_female_adult_53_years	chr12	55626261	55626268	55626267	-	RAMPAGE_only	66	66	102	4.957596	5.023256	chr12	55626113	55626696	LTR|ERVL-MaLR|MLT1F2	-	chr12	55434754	55585471	AC122685.1|ENST00000556750.5	-	55434754,55476548,55493090,55585414	55435131,55476601,55493158,55585471	0.892157
heart_left_ventricle_female_adult_53_years	chr8	19678562	19678616	19678581	+	High_confidence	89	92	342	16.622529	5.860005	chr8	19678447	19678659	LINE|CR1|L3	+	chr8	19678571	19688934	AC090541.1|ENST00000519803.1	+	19678571,19688723	19678827,19688934	0.953216
heart_left_ventricle_female_adult_53_years	chr1	231822835	231822836	231822835	-	RAMPAGE_only	10	13	13	0.631851	3.546594	chr1	231822644	231823057	LTR|ERVL-MaLR|MSTB1	-	chr1	231809752	231847793	STRG.2520.2	-	231809752,231822679,231847518	231814291,231822834,231847793	1.000000
heart_left_ventricle_female_adult_53_years	chr8	86369025	86369030	86369025	+	RAMPAGE_only	4	4	10	0.486039	3.121928	chr8	86368776	86369052	LINE|L2|L2c	+	chr8	86374040	86467476	WWP1|ENST00000265428.4	+	86374040,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	1.000000
heart_left_ventricle_female_adult_53_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	24	24	24	1.166493	2.527293	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	1.000000
heart_left_ventricle_female_adult_53_years	chr11	95917528	95917537	95917536	-	RAMPAGE_only	4	4	11	0.534643	2.921928	chr11	95917477	95917900	DNA|TcMar-Tigger|Tigger2a	-	chr11	95835335	95913077	MTMR2|ENST00000444541.6	-	95835335,95836147,95838093,95841616,95844952,95847713,95849673,95850599,95857551,95858530,95861991,95862271,95865600,95887611,95888155,95912938	95835451,95836324,95838207,95841709,95845159,95847899,95849862,95850749,95857635,95858632,95862102,95862366,95865676,95887684,95888261,95913077	0.727273
heart_left_ventricle_female_adult_53_years	chr11	17225067	17225068	17225067	+	RAMPAGE_only	12	12	17	0.826266	3.750000	chr11	17224821	17225165	LINE|L2|L2a	+	chr11	17260339	17349980	NUCB2|ENST00000646648.1	+	17260339,17269184,17276007,17282788,17295323,17296103,17301743,17309571,17310824,17311184,17311871,17312027,17315385,17330126,17330901,17337347,17349344	17260501,17269331,17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17337534,17349980	0.705882
heart_left_ventricle_female_adult_53_years	chr14	55671787	55671857	55671856	+	High_confidence	12	12	54	2.624610	5.125258	chr14	55671902	55672073	DNA|hAT-Charlie|MER5A	+	chr14	55671314	55684579	KTN1|ENST00000556631.1	+	55671314,55678351,55679564,55684098	55675918,55678444,55679685,55684579	1.000000
heart_left_ventricle_female_adult_53_years	chrX	150777444	150777460	150777449	-	RAMPAGE_only	4	4	20	0.972078	3.536887	chrX	150776742	150777409	LTR|ERV1|MER4A	-	chrX	150768976	150814864	CD99L2|ENST00000634795.1	-	150768976,150770303,150771804,150776173,150777443,150793690,150795205,150795417,150814861	150769101,150770369,150771822,150776293,150777482,150793756,150795289,150795486,150814864	0.800000
heart_left_ventricle_female_adult_53_years	chr9	109429011	109429043	109429042	-	High_confidence	449	456	756	36.744537	6.410291	chr9	109429018	109429111	SINE|MIR|MIRb	+	chr9	109375693	109429043	PTPN3|NM_001145371.1	-	109375693,109381651,109382301,109383422,109389232,109391137,109391470,109404447,109406461,109408320,109409998,109410228,109420423,109422717,109426949,109428620	109379633,109381787,109382447,109383551,109389379,109391199,109391561,109404608,109406618,109408377,109410076,109410415,109420600,109422852,109427122,109429043	0.989418
heart_left_ventricle_female_adult_53_years	chr3	179785665	179785810	179785741	+	RAMPAGE_only	9	11	66	3.207856	5.028946	chr3	179785740	179785926	SINE|MIR|MIRc	+	chr3	179653144	179789401	USP13|NM_003940.2	+	179653144,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653393,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179789401	1.000000
heart_left_ventricle_female_adult_53_years	chr4	113537350	113537411	113537410	-	RAMPAGE_only	6	7	41	1.992759	4.721612	chr4	113537398	113537465	DNA|hAT-Ac|OldhAT1	-	chr4	113451031	113517643	STRG.7305.10	-	113451031,113455725,113457334,113460146,113465528,113500462,113502935,113509637,113513327,113513829,113515068,113517562	113454515,113455821,113457563,113460241,113465604,113500511,113502977,113509675,113513370,113513913,113515191,113517643	0.804878
heart_left_ventricle_female_adult_53_years	chr12	105233170	105233178	105233177	-	High_confidence	4	6	9	0.437435	2.500000	chr12	105233175	105233274	LINE|L2|L2c	+	chr12	105177109	105233154	APPL2|ENST00000547809.5	-	105177109,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105233090	105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105233154	0.888889
heart_left_ventricle_female_adult_53_years	chr8	29018771	29018806	29018771	+	RAMPAGE_only	3	3	11	0.534643	3.095795	chr8	29018661	29018776	LINE|CR1|L3	+	chr8	29046299	29050654	HMBOX1|ENST00000517386.1	+	29046299,29047357,29048953,29050201	29046416,29047453,29049048,29050654	0.727273
heart_left_ventricle_female_adult_53_years	chr8	53524046	53524086	53524046	-	High_confidence	3	3	9	0.437435	2.750000	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.888889
heart_left_ventricle_female_adult_53_years	chr2	26268581	26268601	26268588	+	RAMPAGE_only	7	7	26	1.263701	4.053661	chr2	26268173	26268864	LINE|L1|L1MD3	+	chr2	26261020	26290464	HADHB|ENST00000545822.2	+	26261020,26263379,26269952,26273650,26277072,26278613,26279134,26279993,26282844,26283003,26284116,26284882,26285406,26289917	26261063,26263479,26269997,26273750,26277160,26278801,26279315,26280115,26282924,26283051,26284204,26284957,26285571,26290464	0.807692
heart_left_ventricle_female_adult_53_years	chr13	52661528	52661556	52661555	+	RAMPAGE_only	6	6	11	0.534643	3.121928	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	0.909091
heart_left_ventricle_female_adult_53_years	chr9	98943523	98943576	98943575	+	High_confidence	6	6	20	0.972078	3.684184	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	1.000000
heart_left_ventricle_female_adult_53_years	chr7	33554843	33554904	33554903	+	High_confidence	31	31	174	8.457076	6.007304	chr7	33553757	33554962	LINE|L2|L2a	-	chr7	33554841	33605626	STRG.11119.6	+	33554841,33604864,33605194	33554984,33604975,33605626	0.971264
heart_left_ventricle_female_adult_53_years	chr2	3536845	3536868	3536862	-	High_confidence	3	3	9	0.437435	2.750000	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.555556
heart_left_ventricle_female_adult_53_years	chrX	74000299	74000300	74000299	+	RAMPAGE_only	7	7	11	0.534643	3.095795	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	1.000000
heart_left_ventricle_female_adult_53_years	chr12	29317865	29317894	29317865	-	High_confidence	6	6	13	0.631851	3.418296	chr12	29317690	29317914	SINE|MIR|MIRb	-	chr12	29280414	29317848	LOC100506606|NR_103860.1	-	29280414,29282163,29292214,29293065,29307849,29309770,29317707	29281542,29282360,29292328,29293540,29308044,29309903,29317848	0.692308
heart_left_ventricle_female_adult_53_years	chr6	56839178	56839181	56839178	-	RAMPAGE_only	47	49	80	3.888311	4.914019	chr6	56839131	56839380	LTR|ERVL-MaLR|MLT1J	+	chr6	56670674	56843146	STRG.10028.15	-	56670674,56699652,56701887,56703647,56704279,56735227,56843054	56670807,56699745,56701965,56703746,56704369,56735289,56843146	0.925000
heart_left_ventricle_female_adult_53_years	chr5	160199150	160199156	160199155	+	High_confidence	14	19	31	1.506720	3.885828	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.967742
heart_left_ventricle_female_adult_53_years	chr5	32403116	32403149	32403116	-	RAMPAGE_only	71	74	176	8.554284	5.830807	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.982955
heart_left_ventricle_female_adult_53_years	chr11	18706988	18707033	18707032	-	High_confidence	10	14	43	2.089967	4.707677	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18705417	18706129	IGSF22|ENST00000510673.1	-	18705417,18705816	18705617,18706129	0.627907
heart_left_ventricle_female_adult_53_years	chr7	112995595	112995630	112995629	-	High_confidence	166	168	588	28.579084	7.069629	chr7	112995411	112995725	LINE|L2|L2	+	chr7	112954645	112995634	HRAT17|ENST00000451962.5	-	112954645,112956521,112973604,112980045,112986535,112995567	112954768,112956702,112973672,112980164,112986664,112995634	0.794218
heart_left_ventricle_female_adult_53_years	chr6	122438244	122438262	122438244	-	High_confidence	2	2	8	0.388831	2.500000	chr6	122437916	122438321	LTR|ERVL-MaLR|MSTA	+	chr6	122436788	122439223	Z99129.4|ENST00000624649.1	-	122436788	122439223	1.000000
heart_left_ventricle_female_adult_53_years	chr2	232845825	232845867	232845866	+	RAMPAGE_only	12	12	24	1.166493	4.053509	chr2	232845876	232846546	LINE|CR1|L3	+	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	1.000000
heart_left_ventricle_female_adult_53_years	chr12	4303818	4303964	4303912	+	RAMPAGE_only	38	39	150	7.290583	6.096063	chr12	4303932	4303980	LINE|RTE-BovB|MamRTE1	+	chr12	4278799	4305350	STRG.17189.2	+	4278799,4288841,4299859,4301014	4278919,4288990,4300942,4305350	1.000000
heart_left_ventricle_female_adult_53_years	chr16	15006394	15006395	15006394	+	RAMPAGE_only	47	47	59	2.867629	4.760620	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.711864
heart_left_ventricle_female_adult_53_years	chr1	9743883	9743905	9743890	-	RAMPAGE_only	3	3	11	0.534643	3.121928	chr1	9743549	9743856	SINE|Alu|AluJo	-	chr1	9729027	9751581	CLSTN1|ENST00000435891.5	-	9729027,9731205,9731760,9733400,9733971,9734947,9735466,9735884,9741093,9743883,9744394,9749460,9749763,9751472	9730705,9731390,9731896,9733546,9734142,9735174,9735615,9736042,9741256,9744005,9744643,9749646,9749913,9751581	0.909091
heart_left_ventricle_female_adult_53_years	chr9	129489120	129489126	129489125	+	High_confidence	6	8	12	0.583247	3.459432	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.916667
heart_left_ventricle_female_adult_53_years	chr7	101217578	101217595	101217594	-	High_confidence	4	4	11	0.534643	3.121928	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.909091
heart_left_ventricle_female_adult_53_years	chr1	155058760	155058785	155058772	+	High_confidence	17	17	41	1.992759	4.402399	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.951220
heart_left_ventricle_female_adult_53_years	chr9	39809913	39809914	39809913	-	High_confidence	6	6	6	0.291623	2.584963	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.833333
heart_left_ventricle_female_adult_53_years	chrX	53546444	53546462	53546454	-	RAMPAGE_only	10	10	27	1.312305	4.440636	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.740741
heart_left_ventricle_female_adult_53_years	chr3	42770599	42770600	42770599	+	High_confidence	12	12	12	0.583247	2.792481	chr3	42769529	42771022	LTR|ERV1|LTR12C	+	chr3	42770611	42773635	LOC729083|NR_122070.1	+	42770611,42773204	42771077,42773635	1.000000
heart_left_ventricle_female_adult_53_years	chr22	32059169	32059191	32059169	+	High_confidence	3143	3196	5399	262.412375	6.033521	chr22	32059153	32059234	SINE|Alu|AluSz6	+	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	0.980922
heart_left_ventricle_female_adult_53_years	chr10	20818704	20818705	20818704	-	High_confidence	14	14	14	0.680454	3.378783	chr10	20818659	20818779	LINE|L2|L2b	+	chr10	20813739	20819480	NEBL|ENST00000481592.5	-	20813739,20815624,20817597,20818703,20819423	20814043,20815717,20817692,20818834,20819480	0.571429
heart_left_ventricle_female_adult_53_years	chr16	58423167	58423183	58423177	+	High_confidence	32	33	69	3.353668	5.257379	chr16	58423064	58423375	LINE|L1|L1ME3G	-	chr16	58422673	58441040	STRG.21706.3	+	58422673,58433809,58435691,58437155	58423348,58433948,58435823,58441040	0.913043
heart_left_ventricle_female_adult_53_years	chr11	47420632	47420689	47420632	-	RAMPAGE_only	3	4	19	0.923474	3.947703	chr11	47420478	47420646	SINE|MIR|MIRb	+	chr11	47418768	47426266	PSMC3|ENST00000602866.5	-	47418768,47419115,47420263,47420630,47422573,47422829,47424045,47424428,47424606,47425120,47425866,47426204	47418945,47419197,47420409,47420727,47422722,47422973,47424183,47424491,47424711,47425246,47425950,47426266	0.894737
heart_left_ventricle_female_adult_53_years	chr2	10844420	10844421	10844420	+	High_confidence	10	11	14	0.680454	3.334679	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844233	10885116	STRG.2711.1	+	10844233,10878270,10884833	10844505,10878444,10885116	0.642857
heart_left_ventricle_female_adult_53_years	chr4	142912974	142913004	142913003	-	RAMPAGE_only	7	7	14	0.680454	3.324863	chr4	142912769	142913127	LTR|ERVL-MaLR|THE1D	-	chr4	142405208	142847432	INPP4B|ENST00000506788.5	-	142405208,142429172,142431168,142462662,142725838,142847374	142405324,142429217,142431385,142462726,142725901,142847432	0.714286
heart_left_ventricle_female_adult_53_years	chr9	20658312	20658349	20658348	+	High_confidence	12	19	50	2.430194	4.684373	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658325	20694520	STRG.13499.1	+	20658325,20694519	20658826,20694520	0.680000
heart_left_ventricle_female_adult_53_years	chr9	128921934	128921967	128921966	+	High_confidence	5	5	15	0.729058	3.182006	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.933333
heart_left_ventricle_female_adult_53_years	chr5	141629199	141629220	141629199	-	High_confidence	8	8	13	0.631851	3.392747	chr5	141628786	141629157	LINE|L2|L2a	-	chr5	141621484	141628562	HDAC3|ENST00000459727.5	-	141621484,141625207,141625684,141626193,141627892,141628113,141628558	141621537,141625365,141625764,141626283,141627957,141628187,141628562	1.000000
heart_left_ventricle_female_adult_53_years	chr16	58421251	58421323	58421322	+	High_confidence	150	151	453	22.017560	6.428173	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421325	58443825	STRG.21706.1	+	58421325,58430386,58433809,58435691,58437155	58421421,58430493,58433948,58435823,58443825	0.973510
heart_left_ventricle_female_adult_53_years	chr4	73144752	73144753	73144752	-	RAMPAGE_only	8	9	11	0.534643	3.121928	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.909091
heart_left_ventricle_female_adult_53_years	chr6	125214241	125214248	125214247	+	High_confidence	22	26	52	2.527402	4.958563	chr6	125213832	125214305	LTR|ERVL|LTR33	-	chr6	125214259	125251123	STRG.10409.9	+	125214259,125220077,125229117,125248281	125214463,125220193,125229266,125251123	0.750000
heart_left_ventricle_female_adult_53_years	chr17	75441081	75441090	75441085	+	High_confidence	5	10	24	1.166493	3.295357	chr17	75440927	75441354	LINE|L2|L2a	-	chr17	75441158	75486380	TMEM94|ENST00000577380.5	+	75441158,75471799,75485427,75485870,75486289	75441243,75471929,75485547,75485998,75486380	0.791667
heart_left_ventricle_female_adult_53_years	chr14	103848917	103848919	103848918	-	High_confidence	9	12	17	0.826266	3.852169	chr14	103848808	103849048	SINE|MIR|MIRb	+	chr14	103848268	103848919	STRG.19892.1	-	103848268	103848919	0.647059
heart_left_ventricle_female_adult_53_years	chr10	74138893	74138913	74138912	-	RAMPAGE_only	4	4	8	0.388831	2.521641	chr10	74138649	74138959	SINE|Alu|AluJo	+	chr10	74120256	74150791	AP3M1|NM_001320264.1	-	74120256,74124379,74126147,74129107,74129906,74134026,74136631,74138106,74150334	74123910,74124524,74126355,74129241,74129992,74134164,74136803,74138382,74150791	0.875000
heart_left_ventricle_female_adult_53_years	chr17	63691827	63691851	63691850	+	RAMPAGE_only	2	2	8	0.388831	2.521641	chr17	63691879	63692027	SINE|MIR|MIRc	+	chr17	63622441	63696303	MAP3K3|ENST00000361357.7	+	63622441,63632680,63634708,63646033,63652556,63657793,63666939,63681765,63685516,63688526,63688788,63689543,63690263,63691101,63691732,63692241,63693548	63622763,63632802,63634801,63646074,63652656,63657907,63667060,63681899,63685590,63688594,63688881,63689735,63690412,63691233,63691862,63692419,63696303	0.875000
heart_left_ventricle_female_adult_53_years	chr5	62432226	62432275	62432226	+	High_confidence	16	16	37	1.798344	4.628108	chr5	62432201	62432725	LINE|L1|L1M4b	-	chr5	62432270	62591650	STRG.8068.2	+	62432270,62437273,62442982,62449926,62451729,62467130,62470249,62474415,62476682,62483100,62484009,62485418,62487770,62489301,62490114,62493997,62504666,62504857,62506240,62515387,62526141,62530708,62536701,62537208,62550366,62551222,62561135,62591576	62432354,62437417,62443083,62449999,62451933,62467263,62470308,62474464,62476753,62483293,62484162,62485462,62487861,62489349,62490220,62494124,62504700,62504898,62506357,62515501,62526257,62530785,62536781,62537289,62550462,62551336,62561257,62591650	1.000000
heart_left_ventricle_female_adult_53_years	chr9	110170552	110170835	110170834	+	RAMPAGE_only	37	37	461	22.406391	6.183372	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
heart_left_ventricle_female_adult_53_years	chr10	124678197	124678198	124678197	-	RAMPAGE_only	12	12	18	0.874870	3.572469	chr10	124678125	124678223	LINE|CR1|L3	-	chr10	124621670	124742970	FAM53B|ENST00000392754.7	-	124621670,124681606,124696157,124706635,124742427	124623604,124682379,124696212,124706887,124742970	0.666667
heart_left_ventricle_female_adult_53_years	chr5	157288627	157288628	157288627	+	RAMPAGE_only	6	6	8	0.388831	2.750000	chr5	157288569	157288795	SINE|MIR|MIRb	-	chr5	157277058	157304300	CYFIP2|ENST00000621516.1	+	157277058,157285338,157287018,157288611,157294782,157296672,157300714,157302793,157304237	157277173,157285478,157287108,157288659,157294860,157296774,157300896,157302890,157304300	0.625000
heart_left_ventricle_female_adult_53_years	chr12	2798772	2798810	2798809	+	High_confidence	2	2	8	0.388831	2.807355	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.500000
heart_left_ventricle_female_adult_53_years	chr18	36807869	36807888	36807869	-	High_confidence	7	7	13	0.631851	3.180833	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.692308
heart_left_ventricle_female_adult_53_years	chr10	72176853	72176881	72176854	-	RAMPAGE_only	16	22	54	2.624610	5.053512	chr10	72176827	72177143	LINE|L2|L2c	+	chr10	72097040	72161556	ASCC1|ENST00000530394.5	-	72097040,72102333,72128081,72133056,72152868,72161537	72097450,72102412,72128167,72133181,72152988,72161556	0.888889
heart_left_ventricle_female_adult_53_years	chr5	150118757	150118772	150118757	-	RAMPAGE_only	7	7	20	0.972078	3.884184	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	1.000000
heart_left_ventricle_female_adult_53_years	chr16	87381453	87381470	87381453	-	RAMPAGE_only	10	12	35	1.701136	4.672140	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87326986	87383748	STRG.21948.1	-	87326986,87333885,87335303,87336154,87342876,87343597,87347173,87358410,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87358497,87360366,87383748	0.942857
heart_left_ventricle_female_adult_53_years	chr18	8376199	8376200	8376199	+	RAMPAGE_only	47	47	61	2.964837	5.221567	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8370932	8379313	PTPRM|ENST00000583153.2	+	8370932,8371759,8376045,8376461,8378264,8379166	8371006,8371810,8376200,8376597,8378414,8379313	0.672131
heart_left_ventricle_female_adult_53_years	chr9	39810023	39810034	39810033	-	High_confidence	218	218	494	24.010319	6.296720	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803422	39810013	STRG.13657.2	-	39803422,39809485,39809730	39803859,39809615,39810013	0.945344
heart_left_ventricle_female_adult_53_years	chr6	34762174	34762177	34762176	+	RAMPAGE_only	9	12	15	0.729058	2.842371	chr6	34762020	34762316	SINE|Alu|AluJb	+	chr6	34757911	34773532	SNRPC|ENST00000474635.1	+	34757911,34762594,34767907,34770290,34772930,34773445	34757954,34762703,34767997,34770395,34773007,34773532	0.733333
heart_left_ventricle_female_adult_53_years	chr3	135965682	135965762	135965748	+	High_confidence	23	23	199	9.672173	5.945926	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	1.000000
heart_left_ventricle_female_adult_53_years	chr19	44662159	44662198	44662159	+	High_confidence	13	14	25	1.215097	3.479080	chr19	44661967	44662259	LTR|ERVL|MER77	-	chr19	44662277	44672704	CEACAM19|ENST00000622237.4	+	44662277,44666957,44671745,44672595	44662398,44667321,44671986,44672704	0.560000
heart_left_ventricle_female_adult_53_years	chr14	50756771	50756798	50756797	-	RAMPAGE_only	3	3	12	0.583247	3.277613	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.916667
heart_left_ventricle_female_adult_53_years	chr8	144063411	144063498	144063457	-	High_confidence	13	13	62	3.013441	5.329117	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144053212	144063592	STRG.13250.2	-	144053212,144054560,144054811,144055028,144055787,144056146,144056384,144056617,144056947,144057207,144057447,144057855,144058009,144058238,144058495,144058772,144058979,144059598,144059861,144060652,144063303	144053393,144054735,144054913,144055189,144055939,144056259,144056523,144056755,144057118,144057320,144057713,144057923,144058148,144058404,144058691,144058896,144059079,144059790,144060085,144061257,144063592	0.919355
heart_left_ventricle_female_adult_53_years	chrX	47179158	47179159	47179158	+	High_confidence	11	11	14	0.680454	2.842371	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	1.000000
heart_left_ventricle_female_adult_53_years	chr1	161206422	161206433	161206422	+	RAMPAGE_only	3	3	9	0.437435	2.750000	chr1	161206361	161206444	SINE|tRNA|LFSINE_Vert	+	chr1	161209238	161214239	NDUFS2|ENST00000483804.5	+	161209238,161209482,161209856,161210110,161210303,161210590,161212350,161212591,161213379,161213648,161213863,161214155	161209313,161209595,161209931,161210188,161210389,161210710,161212480,161212654,161213475,161213732,161213921,161214239	0.777778
heart_left_ventricle_female_adult_53_years	chr14	93183482	93183560	93183559	-	RAMPAGE_only	10	10	54	2.624610	4.794297	chr14	93183223	93184271	LTR|Gypsy|MamGyp-int	-	chr14	93182195	93184904	MOAP1|NM_022151.4	-	93182195,93184558,93184809	93184362,93184713,93184904	0.962963
heart_left_ventricle_female_adult_53_years	chr12	101824041	101824077	101824058	-	RAMPAGE_only	4	6	17	0.826266	3.327820	chr12	101824004	101824405	LTR|ERVL-MaLR|MLT1K	+	chr12	101767909	101830818	GNPTAB|ENST00000549940.5	-	101767909,101770020,101770405,101770995,101780151,101780556,101786011,101788547,101789937,101796676,101830558	101768160,101770191,101770585,101771157,101780286,101780621,101786217,101788589,101790057,101796762,101830818	0.941176
heart_left_ventricle_female_adult_53_years	chr12	15001810	15001839	15001825	+	High_confidence	9	9	36	1.749740	4.382021	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.833333
heart_left_ventricle_female_adult_53_years	chr3	123335232	123335233	123335232	-	RAMPAGE_only	4	4	6	0.291623	2.584963	chr3	123334942	123335392	LTR|ERVL|MER74A	+	chr3	123300219	123404561	ADCY5|ENST00000466617.5	-	123300219,123303054,123304066,123314234,123318019,123319673,123320748,123325321,123327617,123328643,123330888,123332563,123347781,123352431,123404438	123300295,123303219,123304183,123314322,123318117,123319818,123320771,123325462,123327759,123328802,123331016,123332675,123347903,123352581,123404561	1.000000
heart_left_ventricle_female_adult_53_years	chr1	214312633	214312655	214312654	+	RAMPAGE_only	33	33	91	4.422954	5.801420	chr1	214312302	214313119	LINE|L2|L2a	-	chr1	214281232	214337131	SMYD2|ENST00000366957.9	+	214281232,214305186,214314761,214318078,214318858,214324640,214327621,214330167,214330949,214332017,214334199,214336703	214281427,214305250,214314872,214318139,214318983,214324708,214327724,214330278,214331070,214332192,214334308,214337131	0.989011
heart_left_ventricle_female_adult_53_years	chr5	150650459	150650494	150650459	+	RAMPAGE_only	29	29	48	2.332986	4.996115	chr5	150650382	150650562	SINE|MIR|MIR3	+	chr5	150640677	150652337	SYNPO|ENST00000519664.1	+	150640677,150647943	150640854,150652337	1.000000
heart_left_ventricle_female_adult_53_years	chr15	97521630	97521666	97521630	-	High_confidence	4	4	14	0.680454	2.931209	chr15	97521399	97521640	SINE|tRNA|LFSINE_Vert	+	chr15	97370370	97521811	LINC02254|ENST00000558621.2	-	97370370,97397656,97427650,97515286,97521580	97371341,97397740,97427952,97515424,97521811	0.714286
heart_left_ventricle_female_adult_53_years	chr10	122127024	122127025	122127024	+	High_confidence	17	17	22	1.069285	4.106603	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.636364
heart_left_ventricle_female_adult_53_years	chr4	185513049	185513088	185513087	-	RAMPAGE_only	4	4	13	0.631851	2.522055	chr4	185513078	185513190	LINE|L2|L2b	-	chr4	185512093	185535491	PDLIM3|ENST00000504011.5	-	185512093,185514702,185523361,185525019,185535341	185514337,185514890,185523446,185525171,185535491	0.769231
heart_left_ventricle_female_adult_53_years	chr19	13037376	13037397	13037376	+	RAMPAGE_only	2	2	8	0.388831	2.750000	chr19	13037335	13037620	LINE|CR1|L3b	+	chr19	13024938	13094770	NFIX|ENST00000587260.1	+	13024938,13073046,13073421,13073905,13075534,13078612,13081679,13090298,13094634	13025552,13073109,13073496,13074026,13075671,13078735,13081855,13090390,13094770	1.000000
heart_left_ventricle_female_adult_53_years	chr3	33838261	33838325	33838290	+	RAMPAGE_only	6	6	23	1.117889	4.088779	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.956522
heart_left_ventricle_female_adult_53_years	chr1	155343321	155343324	155343323	-	RAMPAGE_only	18	24	29	1.409513	4.430632	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.931034
heart_left_ventricle_female_adult_53_years	chr5	139364584	139364648	139364647	+	RAMPAGE_only	6	7	25	1.215097	3.970176	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.880000
heart_left_ventricle_female_adult_53_years	chr1	16019261	16019270	16019261	-	High_confidence	2	2	7	0.340227	2.807355	chr1	16019218	16019288	LINE|L2|L2b	+	chr1	16014027	16019594	HSPB7|ENST00000375718.4	-	16014027,16017073,16017764,16019133	16015759,16017207,16017852,16019594	1.000000
heart_left_ventricle_female_adult_53_years	chr3	12662744	12662763	12662762	-	RAMPAGE_only	12	14	25	1.215097	3.767894	chr3	12662589	12662820	LINE|L2|L2c	+	chr3	12584332	12664125	RAF1|ENST00000423275.5	-	12584332,12584846,12585121,12585680,12587590,12590797,12591707,12599690,12600151,12600387,12604135,12606200,12608765,12609232,12618514,12663812	12584657,12584981,12585253,12585799,12587637,12590974,12591792,12599808,12600279,12600415,12604289,12606299,12608923,12609335,12618747,12664125	0.760000
heart_left_ventricle_female_adult_53_years	chr2	178679617	178679632	178679617	-	RAMPAGE_only	1	1	7	0.340227	2.584963	chr2	178679617	178679655	LINE|CR1|L3	-	chr2	178527011	178804642	TTN|ENST00000615779.5	-	178527011,178527445,178528273,178528527,178529959,178530240,178535981,178536937,178537341,178538539,178538945,178539381,178540067,178541281,178542263,178542661,178543068,178543833,178544200,178545387,178545819,178546211,178546599,178547002,178547406,178549569,178549985,178550966,178551629,178553501,178553913,178554452,178554864,178556847,178557252,178557647,178558340,178559310,178576528,178576922,178577601,178577987,178578610,178578805,178579560,178579938,178580321,178581498,178581905,178582295,178582939,178583606,178584275,178584668,178585071,178586504,178587117,178587515,178587898,178588537,178591598,178591977,178592378,178592774,178593172,178593567,178593960,178594343,178595506,178597537,178597907,178598505,178598747,178599145,178599553,178600853,178601264,178601657,178601881,178602001,178602281,178603875,178604707,178604986,178605413,178607020,178607400,178607784,178608177,178608605,178609207,178609683,178610089,178610992,178611371,178611757,178612056,178612276,178612772,178613160,178613750,178614051,178614465,178614846,178615306,178615640,178616478,178616728,178617119,178617324,178617778,178618188,178618583,178619620,178619987,178620216,178620714,178621101,178621474,178621839,178622669,178624464,178625272,178629300,178630240,178630803,178631033,178632146,178632525,178632917,178633186,178633412,178633816,178634365,178634722,178635164,178635439,178635962,178636397,178637368,178639698,178640047,178640540,178641240,178642236,178644547,178645919,178649816,178650163,178650750,178651242,178651452,178651665,178651883,178652095,178652263,178652457,178659004,178659171,178662965,178670217,178671089,178671970,178672406,178672634,178673632,178674313,178675038,178675920,178677620,178678124,178678413,178678746,178679338,178679598,178679893,178680253,178681078,178681375,178681660,178682696,178683210,178683998,178684329,178684665,178684905,178685252,178685517,178688110,178688676,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453,178704146,178704509,178704876,178705173,178706453,178706861,178707525,178709565,178710634,178711061,178711943,178712314,178712696,178713084,178713896,178714291,178714985,178715492,178717094,178717522,178717942,178718321,178718694,178719163,178719553,178719982,178720384,178720920,178721846,178722258,178722658,178723045,178723417,178723855,178724259,178725367,178725767,178727089,178727584,178728109,178728499,178728890,178729287,178729663,178730092,178730504,178730924,178731304,178731692,178732065,178732439,178732833,178733238,178733613,178734327,178734706,178735510,178738081,178739140,178753123,178758983,178764176,178764526,178766380,178767758,178768013,178768672,178769678,178770059,178770411,178771210,178773108,178773461,178773837,178774206,178774920,178775355,178777148,178777419,178777703,178778873,178779228,178779999,178781120,178782211,178782538,178782805,178783719,178784069,178785619,178785847,178789359,178789977,178790707,178792071,178793403,178794398,178794921,178799486,178799824,178800394,178802137,178804551	178527307,178527748,178528427,178529219,178530116,178535849,178536575,178537243,178537917,178538839,178539251,178539966,178540370,178541584,178542563,178542949,178543662,178544115,178544506,178545693,178546116,178546502,178546905,178547305,178549473,178549869,178550273,178551260,178553396,178553807,178554216,178554752,178555152,178557144,178557555,178558235,178558637,178576416,178576831,178577510,178577898,178578185,178578715,178579393,178579848,178580229,178580609,178581804,178582208,178582592,178583227,178583906,178584578,178584968,178585347,178586807,178587417,178587800,178588219,178591504,178591892,178592277,178592660,178593083,178593475,178593867,178594242,178594646,178595809,178597819,178598058,178598654,178599062,178599445,178599850,178601171,178601564,178601787,178601914,178602150,178602590,178604305,178604898,178605295,178605713,178607314,178607685,178608081,178608477,178608908,178609570,178609986,178610389,178611271,178611677,178611954,178612162,178612576,178613072,178613276,178613937,178614348,178614753,178614968,178615484,178615788,178616630,178617013,178617234,178617512,178618081,178618491,178618853,178619887,178620112,178620625,178620993,178621368,178621741,178622008,178622767,178624731,178625396,178629443,178630367,178630943,178631300,178632413,178632792,178633044,178633326,178633676,178634083,178634629,178634849,178635304,178635715,178636241,178636799,178637419,178639788,178640110,178640630,178641315,178642317,178644616,178646030,178649894,178650271,178650834,178651320,178651536,178651749,178651967,178652179,178652347,178652541,178659088,178659255,178663055,178670295,178671170,178672267,178672481,178672703,178673710,178674409,178675113,178675995,178677917,178678208,178678497,178678830,178679416,178679682,178680055,178680331,178681171,178681450,178681738,178682903,178683291,178684082,178684413,178684749,178684989,178685330,178685598,178688224,178688778,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702663,178704407,178704777,178704966,178705357,178706739,178706954,178707813,178709856,178710922,178711349,178712222,178712593,178712975,178713372,178714175,178714573,178715264,178715774,178717382,178717810,178718221,178718600,178718973,178719451,178719832,178720264,178720663,178721202,178722134,178722546,178722937,178723324,178723696,178724143,178724538,178725649,178726046,178727371,178727863,178728397,178728778,178729169,178729566,178729945,178730371,178730792,178731203,178731583,178731971,178732347,178732718,178733121,178733517,178733892,178734606,178734988,178736074,178738360,178741921,178753180,178759172,178764302,178764811,178766612,178767924,178768155,178768933,178769939,178770320,178770675,178771471,178773369,178773725,178774110,178774473,178775202,178777049,178777317,178777584,178777975,178779118,178779462,178780205,178781263,178782427,178782602,178783064,178783785,178784351,178785742,178786141,178789497,178790115,178790845,178792197,178793541,178794551,178795252,178799731,178799910,178800682,178802341,178804642	0.571429
heart_left_ventricle_female_adult_53_years	chr1	41159913	41159914	41159913	-	High_confidence	8	10	10	0.486039	2.646439	chr1	41159844	41160085	SINE|MIR|MIRc	-	chr1	41028191	41159871	SCMH1|ENST00000456518.3	-	41028191,41028583,41037361,41046406,41048689,41070594,41075218,41142877,41159724	41028319,41028726,41037541,41046598,41048890,41070721,41075451,41143112,41159871	1.000000
heart_left_ventricle_female_adult_53_years	chr1	166850123	166850124	166850123	+	RAMPAGE_only	11	11	12	0.583247	3.459432	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.916667
heart_left_ventricle_female_adult_53_years	chr1	153967486	153967498	153967486	+	High_confidence	10	10	21	1.020682	3.784184	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.666667
heart_left_ventricle_female_adult_53_years	chr2	37020221	37020329	37020227	-	RAMPAGE_only	20	20	114	5.540843	5.574627	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	37008167	37013995	HEATR5B|ENST00000471051.1	-	37008167,37013840	37008848,37013995	0.745614
heart_left_ventricle_female_adult_53_years	chr19	48868595	48868631	48868613	-	High_confidence	136	162	775	37.668011	7.445776	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.992258
heart_left_ventricle_female_adult_53_years	chr5	139364709	139364717	139364711	+	RAMPAGE_only	8	10	17	0.826266	3.969816	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.882353
heart_left_ventricle_female_adult_53_years	chr9	127762413	127762428	127762413	-	High_confidence	4	4	9	0.437435	2.947703	chr9	127762302	127762854	LINE|L2|L2a	+	chr9	127744897	127762416	SH2D3C|ENST00000440630.5	-	127744897,127747146,127749210,127751171,127761610,127762391	127745099,127747271,127749665,127751300,127761650,127762416	0.777778
heart_left_ventricle_female_adult_53_years	chr7	7689358	7689369	7689358	+	High_confidence	7	7	14	0.680454	2.931209	chr7	7689061	7689544	LTR|ERVL-MaLR|MLT1L	+	chr7	7689066	7721475	STRG.10852.4	+	7689066,7720912	7689460,7721475	0.714286
heart_left_ventricle_female_adult_53_years	chr14	91462209	91462211	91462210	-	High_confidence	9	12	18	0.874870	3.614369	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.944444
heart_left_ventricle_female_adult_53_years	chr10	45000503	45000515	45000503	+	High_confidence	10	10	26	1.263701	4.083856	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.961538
heart_left_ventricle_female_adult_53_years	chr7	123604046	123604071	123604070	+	RAMPAGE_only	5	7	13	0.631851	3.251629	chr7	123603369	123604299	LINE|CR1|L3	+	chr7	123601866	123639502	STRG.11867.1	+	123601866,123604031,123608593,123612275,123614500,123616220,123616363,123617578,123624568,123627109,123628863,123629965,123636808	123601914,123604212,123608654,123612400,123614609,123616273,123616495,123617737,123624814,123627281,123629434,123630119,123639502	0.923077
heart_left_ventricle_female_adult_53_years	chr13	37934547	37934581	37934580	+	High_confidence	2	2	8	0.388831	2.807355	chr13	37934381	37935273	LTR|ERV1|LTR1D	-	chr13	37934564	38048169	LINC02334|ENST00000617568.1	+	37934564,37997811,38013403,38029648,38043950	37935037,37997937,38013501,38029691,38048169	0.875000
heart_left_ventricle_female_adult_53_years	chr1	39382145	39382146	39382145	+	RAMPAGE_only	5	5	8	0.388831	3.000000	chr1	39382176	39382271	SINE|MIR|MIRb	+	chr1	39331137	39486987	MACF1|ENST00000289893.8	+	39331137,39337181,39340501,39340803,39346976,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39378460,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39427960,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39465094,39468614,39479797,39484600,39485537	39336653,39337331,39340717,39340953,39347210,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39378523,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39428287,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39465112,39468732,39480009,39484730,39486987	1.000000
heart_left_ventricle_female_adult_53_years	chr8	97719145	97719183	97719182	+	RAMPAGE_only	19	19	32	1.555324	3.941428	chr8	97719213	97719522	SINE|Alu|AluSx1	+	chr8	97644545	97725243	MTDH|ENST00000519934.5	+	97644545,97661071,97686667,97687428,97689037,97690951,97706625,97713661,97719048,97722878,97724599	97644887,97661173,97686752,97687605,97689103,97691188,97706750,97713769,97719189,97723035,97725243	1.000000
heart_left_ventricle_female_adult_53_years	chr12	18753699	18753726	18753699	+	High_confidence	11	11	27	1.312305	4.623517	chr12	18753545	18754527	LTR|ERV1|LTR1D	-	chr12	18753734	18761110	STRG.17447.1	+	18753734,18760497	18753770,18761110	0.629630
heart_left_ventricle_female_adult_53_years	chr2	186607926	186607952	186607935	+	RAMPAGE_only	18	18	47	2.284383	5.012480	chr2	186607713	186608293	LTR|ERVL?|LTR87	-	chr2	186600204	186677441	ITGAV|ENST00000433736.6	+	186600204,186602020,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186600381,186602151,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186677441	0.659574
heart_left_ventricle_female_adult_53_years	chr2	37020017	37020018	37020017	-	RAMPAGE_only	43	50	62	3.013441	4.936141	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	37008167	37013995	HEATR5B|ENST00000471051.1	-	37008167,37013840	37008848,37013995	0.612903
heart_left_ventricle_female_adult_53_years	chr1	100173330	100173357	100173356	-	RAMPAGE_only	10	10	24	1.166493	3.538320	chr1	100173269	100174301	LINE|L1|L1M5	+	chr1	100148852	100178215	LRRC39|ENST00000370137.5	-	100148852,100152384,100155050,100156171,100158230,100159258,100160465,100168403,100173330,100178134	100149097,100152524,100155203,100156317,100158367,100159415,100160571,100168594,100173370,100178215	1.000000
heart_left_ventricle_female_adult_53_years	chr15	99114935	99114942	99114941	+	RAMPAGE_only	3	3	8	0.388831	2.521641	chr15	99114935	99115139	SINE|MIR|MIRb	-	chr15	99105079	99135595	SYNM|NM_015286.5	+	99105079,99113590,99126721,99129366,99132749	99106009,99113715,99126792,99131813,99135595	0.750000
heart_left_ventricle_female_adult_53_years	chr8	22392829	22392884	22392883	+	High_confidence	20	20	51	2.478798	5.110902	chr8	22392932	22392982	LINE|L2|L2b	+	chr8	22392829	22404870	SLC39A14|ENST00000520832.1	+	22392829,22404695	22393232,22404870	0.725490
heart_left_ventricle_female_adult_53_years	chr8	133459152	133459249	133459152	-	RAMPAGE_only	5	5	40	1.944155	4.649115	chr8	133458873	133459194	SINE|Alu|AluJo	-	chr8	133454852	133571925	ST3GAL1|ENST00000521180.5	-	133454852,133461874,133463413,133464777,133465893,133475718,133499134,133545773,133571692	133459937,133461994,133463459,133464957,133466090,133476600,133499189,133545926,133571925	0.950000
heart_left_ventricle_female_adult_53_years	chr1	16020468	16020473	16020472	-	High_confidence	17	29	48	2.332986	4.688013	chr1	16020340	16020460	SINE|MIR|MIR3	-	chr1	16014027	16019594	HSPB7|ENST00000375718.4	-	16014027,16017073,16017764,16019133	16015759,16017207,16017852,16019594	0.875000
heart_left_ventricle_female_adult_53_years	chr8	26366358	26366396	26366395	+	RAMPAGE_only	8	9	39	1.895552	3.916580	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	0.948718
heart_left_ventricle_female_adult_53_years	chr6	28354199	28354206	28354199	-	High_confidence	5	5	14	0.680454	3.378783	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329373	28354186	ZSCAN31|ENST00000446222.5	-	28329373,28336789,28353861,28354130	28329778,28336943,28353952,28354186	0.571429
heart_left_ventricle_female_adult_53_years	chr7	29122314	29122347	29122314	+	High_confidence	14	14	32	1.555324	4.573557	chr7	29122133	29122608	LTR|ERV1|MER31A	-	chr7	29122339	29514667	AC004593.3|ENST00000644824.1	+	29122339,29126328,29128013,29145853,29146848,29354624,29367931,29393678,29398372,29400542,29480278,29495951,29499866,29504743,29507227,29509300,29512563	29122642,29126626,29128167,29146745,29146960,29354663,29367987,29393710,29398486,29400828,29480356,29496036,29500040,29504821,29507365,29509406,29514667	0.937500
heart_left_ventricle_female_adult_53_years	chr10	95437804	95437816	95437815	-	RAMPAGE_only	22	22	43	2.089967	4.552767	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.790698
heart_left_ventricle_female_adult_53_years	chr4	185878690	185878693	185878692	-	RAMPAGE_only	5	8	11	0.534643	2.646439	chr4	185878408	185878937	LINE|L2|L2	+	chr4	185677557	185811104	SORBS2|ENST00000464819.5	-	185677557,185678422,185678795,185775226,185810937	185677638,185678547,185678822,185775366,185811104	0.636364
heart_left_ventricle_female_adult_53_years	chr14	103778747	103778748	103778747	-	RAMPAGE_only	7	7	7	0.340227	2.521641	chr14	103778558	103778705	SINE|Alu|AluJr	-	chr14	103733194	103797488	PPP1R13B|ENST00000647748.1	-	103733194,103736002,103737693,103738678,103738885,103739823,103741789,103742653,103746372,103749793,103752999,103754069,103757649,103778744,103784794,103797370	103735195,103736202,103737860,103738812,103739023,103740593,103742291,103742823,103746553,103749934,103753196,103754238,103757751,103778821,103784914,103797488	1.000000
heart_left_ventricle_female_adult_53_years	chr6	34219370	34219371	34219370	+	High_confidence	14	16	17	0.826266	3.149397	chr6	34219234	34219371	SINE|Alu|AluSx	+	chr6	34219438	34220066	CYCSP55|ENST00000399027.3	+	34219438,34220022	34219705,34220066	0.705882
heart_left_ventricle_female_adult_53_years	chr19	34860632	34860646	34860633	-	High_confidence	5	7	23	1.117889	3.327485	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.826087
heart_left_ventricle_female_adult_53_years	chr8	17895504	17895512	17895511	-	High_confidence	17	21	43	2.089967	4.926037	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.906977
heart_left_ventricle_female_adult_53_years	chr19	5680196	5680252	5680248	-	High_confidence	14	19	66	3.207856	5.143122	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
heart_left_ventricle_female_adult_53_years	chr1	155478110	155478111	155478110	-	RAMPAGE_only	8	9	10	0.486039	2.725481	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.900000
heart_left_ventricle_female_adult_53_years	chr1	172453176	172453177	172453176	+	High_confidence	6	6	7	0.340227	2.584963	chr1	172453135	172453205	LINE|RTE-BovB|MamRTE1	+	chr1	172452892	172468829	C1orf105|NM_001300760.1	+	172452892,172456414,172462177,172465298,172468448	172453189,172456489,172462245,172465363,172468829	0.857143
heart_left_ventricle_female_adult_53_years	chr5	79689325	79689355	79689354	+	High_confidence	9	9	23	1.117889	4.186704	chr5	79689238	79689475	SINE|MIR|MIRb	+	chr5	79689835	79800226	CMYA5|NM_153610.4	+	79689835,79728914,79743826,79745221,79747090,79752675,79758752,79761810,79763061,79788970,79790969,79793436,79799369	79690056,79739403,79743922,79745455,79747113,79752794,79758902,79761957,79763209,79789104,79791069,79793610,79800226	0.565217
heart_left_ventricle_female_adult_53_years	chr1	31376356	31376357	31376356	-	High_confidence	90	91	91	4.422954	4.778888	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365720	31376357	STRG.487.2	-	31365720,31367392,31369384,31372941,31376355	31365939,31367494,31369557,31373041,31376357	0.978022
heart_left_ventricle_female_adult_53_years	chr1	12327177	12327205	12327204	+	RAMPAGE_only	8	8	13	0.631851	3.251629	chr1	12327040	12327244	SINE|MIR|MIR	-	chr1	12311525	12373848	STRG.213.7	+	12311525,12311812,12314114,12318071,12319496,12321808,12322535,12323705,12327647,12329828,12333225,12335704,12341782,12342898,12345373,12346604,12348822,12349163,12353973,12355898,12356397,12358458,12362719,12363071,12368467,12369466,12373749	12311625,12311925,12314327,12318337,12319630,12321964,12322746,12323780,12327854,12329918,12333366,12335827,12341885,12343051,12345509,12346652,12348973,12349374,12354221,12356090,12356524,12358601,12362850,12363247,12368591,12369702,12373848	0.923077
heart_left_ventricle_female_adult_53_years	chr14	81170413	81170423	81170419	-	High_confidence	8	8	23	1.117889	3.413088	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.956522
heart_left_ventricle_female_adult_53_years	chr7	131002287	131002291	131002290	-	RAMPAGE_only	6	6	12	0.583247	3.277613	chr7	131002039	131002345	SINE|Alu|AluSx	+	chr7	130944197	131052493	LINC-PINT|ENST00000643373.1	-	130944197,130945719,130984052,131052424	130944889,130945855,130984109,131052493	0.916667
heart_left_ventricle_female_adult_53_years	chr12	46243235	46243313	46243278	-	RAMPAGE_only	25	29	121	5.881070	5.887721	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.991736
heart_left_ventricle_female_adult_53_years	chr3	156547617	156547623	156547622	-	RAMPAGE_only	7	8	17	0.826266	3.375000	chr3	156547519	156547912	LINE|RTE-X|L4_C_Mam	+	chr3	156543061	156548997	SSR3|ENST00000464138.1	-	156543061,156544307,156548804	156543269,156544439,156548997	0.941176
heart_left_ventricle_female_adult_53_years	chr9	33394066	33394157	33394087	-	High_confidence	5	5	23	1.117889	4.186704	chr9	33394009	33394115	LINE|L2|L2b	+	chr9	33385505	33394176	AQP7|ENST00000447660.3	-	33385505,33386076,33386403,33393796	33385866,33386195,33386541,33394176	0.956522
heart_left_ventricle_female_adult_53_years	chr3	138404487	138404810	138404684	+	RAMPAGE_only	161	165	530	25.760059	4.367083	chr3	138404613	138404703	SINE|MIR|MIR1_Amn	+	chr3	138349127	138405535	MRAS|NM_001252090.1	+	138349127,138372865,138397323,138398468,138400533,138402169	138349379,138373076,138397477,138398568,138400613,138405535	0.996226
heart_left_ventricle_female_adult_53_years	chr8	124345081	124345094	124345093	-	RAMPAGE_only	12	15	28	1.360909	3.825252	chr8	124345029	124345428	LTR|ERV1|MER57C1	+	chr8	124306188	124372491	STRG.13100.1	-	124306188,124320085,124322104,124323320,124327353,124330747,124371853,124372105	124314061,124320191,124322147,124323375,124327421,124330792,124372010,124372491	0.857143
heart_left_ventricle_female_adult_53_years	chr1	75376267	75376280	75376267	-	RAMPAGE_only	3	5	10	0.486039	3.121928	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.700000
heart_left_ventricle_female_adult_53_years	chr2	231072232	231072265	231072247	+	RAMPAGE_only	5	5	22	1.069285	4.221928	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.909091
heart_left_ventricle_female_adult_53_years	chr15	42415905	42415906	42415905	-	RAMPAGE_only	22	23	31	1.506720	4.582119	chr15	42415739	42416031	SINE|Alu|AluSx	-	chr15	42415122	42448298	ZNF106|ENST00000565500.5	-	42415122,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439552,42442414,42444262,42444981,42446658,42448298	0.645161
heart_left_ventricle_female_adult_53_years	chr8	18063191	18063226	18063191	-	High_confidence	27	27	142	6.901752	5.548225	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
heart_left_ventricle_female_adult_53_years	chr2	10844241	10844267	10844246	+	High_confidence	5	8	22	1.069285	3.845351	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844233	10885116	STRG.2711.1	+	10844233,10878270,10884833	10844505,10878444,10885116	0.727273
heart_left_ventricle_female_adult_53_years	chr19	10564937	10564960	10564938	-	RAMPAGE_only	4	7	13	0.631851	3.418296	chr19	10564755	10564893	SINE|MIR|MIRb	-	chr19	10553575	10565971	KRI1|ENST00000478863.5	-	10553575,10555086,10555284,10557551,10557971,10558163,10559358,10559612,10559809,10560311,10561002,10561168,10561666,10561790,10562728,10564928,10565716,10565905	10554281,10555185,10555349,10557895,10558060,10558239,10559529,10559708,10559936,10560448,10561080,10561265,10561716,10561845,10562837,10565034,10565790,10565971	0.923077
heart_left_ventricle_female_adult_53_years	chr21	39443529	39443530	39443529	+	RAMPAGE_only	8	8	8	0.388831	2.750000	chr21	39441903	39443576	LINE|L2|L2b	-	chr21	39745406	39802096	IGSF5|ENST00000380588.4	+	39745406,39746215,39765534,39770915,39779089,39788166,39792007,39793533,39801261	39745526,39746298,39765852,39771215,39779305,39788188,39792099,39793613,39802096	0.500000
heart_left_ventricle_female_adult_53_years	chr11	58578102	58578133	58578132	-	High_confidence	6	8	22	1.069285	3.533771	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.818182
heart_left_ventricle_female_adult_53_years	chr1	205512274	205512317	205512316	+	RAMPAGE_only	34	34	91	4.422954	5.634345	chr1	205512088	205512401	LINE|L2|L2	-	chr1	205504801	205527825	CDK18|ENST00000419301.1	+	205504801,205523146,205523482,205524231,205525138,205526064,205526366,205526774,205527793	205504878,205523297,205523715,205524357,205525195,205526179,205526461,205526837,205527825	0.956044
heart_left_ventricle_female_adult_53_years	chr20	34369441	34369446	34369441	+	RAMPAGE_only	3	3	8	0.388831	2.521641	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.875000
heart_left_ventricle_female_adult_53_years	chr18	35136534	35136535	35136534	+	RAMPAGE_only	26	26	35	1.701136	4.373796	chr18	35136349	35136693	LINE|L2|L2c	-	chr18	35041649	35143470	MAPRE2|ENST00000589699.1	+	35041649,35070194,35097445,35101945,35126947,35132031,35140294	35041766,35070322,35097591,35102159,35127087,35132190,35143470	0.971429
heart_left_ventricle_female_adult_53_years	chr17	78986785	78986799	78986798	+	RAMPAGE_only	10	10	35	1.701136	3.968340	chr17	78986602	78987068	LTR|ERV1|MER4C	-	chr17	78991296	78992310	STRG.23301.1	+	78991296	78992310	0.828571
heart_left_ventricle_female_adult_53_years	chr1	214278901	214278924	214278923	-	High_confidence	70	70	261	12.685614	6.385905	chr1	214278781	214279013	LINE|L2|L2c	+	chr1	214261272	214278919	STRG.2316.1	-	214261272,214264935,214278713	214262964,214264975,214278919	0.896552
heart_left_ventricle_female_adult_53_years	chr8	116730249	116730254	116730249	-	RAMPAGE_only	21	21	36	1.749740	4.734522	chr8	116730180	116730513	DNA|hAT-Charlie|MER1B	+	chr8	116648805	116755784	EIF3H|ENST00000518949.5	-	116648805,116655855,116657214,116658812,116697052,116755665	116648926,116656005,116657314,116658980,116697237,116755784	0.638889
heart_left_ventricle_female_adult_53_years	chr3	46558627	46558628	46558627	+	RAMPAGE_only	9	10	12	0.583247	3.459432	chr3	46558357	46558849	LINE|L1|L1MEf	-	chr3	46557397	46559688	LRRC2-AS1|ENST00000599511.1	+	46557397	46559688	0.583333
heart_left_ventricle_female_adult_53_years	chr21	25688002	25688020	25688002	+	RAMPAGE_only	3	3	7	0.340227	2.521641	chr21	25687699	25688081	LINE|L2|L2a	+	chr21	25689865	25714731	JAM2|ENST00000460679.5	+	25689865,25693755,25698676,25702169,25705978,25709433,25711366,25712339,25714639	25689973,25693908,25698879,25702269,25706086,25709449,25711568,25712382,25714731	1.000000
heart_left_ventricle_female_adult_53_years	chr2	3533917	3533935	3533934	-	High_confidence	25	26	74	3.596687	5.130123	chr2	3533849	3534784	LTR|ERV1|LTR27E	+	chr2	3531983	3533782	AC108488.1|ENST00000439547.5	-	3531983,3533107,3533710	3532310,3533190,3533782	0.986486
heart_left_ventricle_female_adult_53_years	chr3	49468648	49468670	49468669	+	High_confidence	4	4	9	0.437435	2.725481	chr3	49468531	49468836	SINE|Alu|AluSx1	-	chr3	49468702	49535618	DAG1|NM_001177643.2	+	49468702,49510418,49530796	49469055,49510819,49535618	0.777778
heart_left_ventricle_female_adult_53_years	chr6	137218709	137218745	137218709	-	High_confidence	3	4	12	0.583247	2.845351	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.916667
heart_left_ventricle_female_adult_53_years	chr19	7635821	7635831	7635821	-	RAMPAGE_only	7	10	24	1.166493	4.004886	chr19	7635792	7635861	DNA|hAT-Blackjack|MER81	+	chr19	7631614	7633748	PCP2|ENST00000311069.5	-	7631614,7632392,7632715,7633406	7631808,7632517,7632830,7633748	0.833333
heart_left_ventricle_female_adult_53_years	chr11	118241598	118241632	118241603	-	RAMPAGE_only	3	3	12	0.583247	2.845351	chr11	118241373	118241624	SINE|MIR|MIR	+	chr11	118229453	118252320	MPZL3|ENST00000446386.2	-	118229453,118233459,118235423,118240210,118252221	118229920,118233523,118235589,118240377,118252320	0.666667
heart_left_ventricle_female_adult_53_years	chr8	93795069	93795114	93795069	+	High_confidence	4	4	23	1.117889	3.516028	chr8	93794953	93795181	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.913043
heart_left_ventricle_female_adult_53_years	chr10	114182206	114182235	114182234	+	RAMPAGE_only	16	17	46	2.235779	4.664654	chr10	114182000	114182250	LINE|CR1|L3	+	chr10	114179589	114228417	TDRD1|ENST00000369280.1	+	114179589,114187825,114190960,114199172,114201409,114202237,114203071,114203387,114204072,114204721,114206243,114210580,114210859,114211865,114213345,114213976,114217544,114218413,114220567,114221356,114222586,114226048,114227909,114228037	114180043,114188156,114191019,114199317,114201515,114202298,114203176,114203567,114204216,114204893,114206330,114210748,114210967,114212036,114213588,114214114,114217655,114218584,114220843,114221476,114222703,114226216,114227956,114228417	1.000000
heart_left_ventricle_female_adult_53_years	chrX	15607186	15607208	15607186	-	High_confidence	11	13	28	1.360909	4.310443	chrX	15606866	15607460	LTR|ERV1|LTR10C	+	chrX	15494285	15607189	STRG.27181.3	-	15494285,15564023,15566252,15567725,15570294,15571623,15572200,15573366,15575665,15578088,15581220,15585474,15587752,15589343,15591712,15592228,15594844,15600725,15607136	15494849,15564218,15566369,15567826,15570353,15571796,15572323,15573465,15575810,15578315,15581390,15585572,15587858,15589456,15591856,15592322,15595003,15601014,15607189	0.964286
heart_left_ventricle_female_adult_53_years	chr3	58565356	58565393	58565392	-	RAMPAGE_only	17	18	39	1.895552	4.396229	chr3	58565323	58565435	DNA|hAT-Charlie|Charlie19a	+	chr3	58564111	58577764	FAM107A|NM_007177.3	-	58564111,58567207,58569690,58570325,58577308	58566695,58567364,58569865,58570423,58577764	0.974359
heart_left_ventricle_female_adult_53_years	chrX	48590006	48590048	48590029	+	High_confidence	8	8	30	1.458117	4.159200	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48590041	48598827	WDR13|ENST00000470124.1	+	48590041,48597957,48598716	48590287,48598037,48598827	0.500000
heart_left_ventricle_female_adult_53_years	chr14	34586235	34586269	34586235	-	RAMPAGE_only	6	8	31	1.506720	3.977917	chr14	34585901	34586200	SINE|Alu|AluSg	-	chr14	34561093	34630109	SNX6|ENST00000396526.7	-	34561093,34567685,34567853,34575755,34581560,34586229,34593044,34597549,34603347,34605595,34608029,34609637,34629906	34563175,34567771,34568013,34575842,34581600,34586305,34593150,34597645,34603471,34605717,34608140,34609742,34630109	1.000000
heart_left_ventricle_female_adult_53_years	chr15	42415321	42415691	42415440	-	RAMPAGE_only	264	268	1340	65.129206	6.349936	chr15	42415122	42415421	SINE|Alu|AluSq2	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	0.994030
heart_left_ventricle_female_adult_53_years	chr1	202582622	202582714	202582663	+	RAMPAGE_only	61	65	149	7.241979	5.445669	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	1.000000
heart_left_ventricle_female_adult_53_years	chr14	77736987	77737016	77737015	-	High_confidence	2	2	6	0.291623	2.584963	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.666667
heart_left_ventricle_female_adult_53_years	chr3	134485443	134485490	134485462	-	High_confidence	16	16	115	5.589447	5.741058	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.982609
heart_left_ventricle_female_adult_53_years	chr2	113454746	113454755	113454746	+	RAMPAGE_only	4	4	9	0.437435	2.947703	chr2	113454787	113454885	LINE|L1|L1MC5	+	chr2	113468584	113496119	CBWD2|ENST00000479583.5	+	113468584,113482176,113493756,113493928,113495119,113495636	113471089,113482228,113493825,113493994,113495249,113496119	0.888889
heart_left_ventricle_female_adult_53_years	chr1	31373705	31373706	31373705	-	High_confidence	16	16	18	0.874870	3.852169	chr1	31373523	31373667	SINE|MIR|MIRb	-	chr1	31365252	31373288	FABP3|NM_001320996.1	-	31365252,31367392,31369384,31372941	31365939,31367494,31369590,31373288	0.722222
heart_left_ventricle_female_adult_53_years	chr9	122858682	122858712	122858682	-	RAMPAGE_only	2	2	10	0.486039	2.725481	chr9	122858410	122858651	SINE|MIR|MIR	-	chr9	122853773	122855737	RC3H2|ENST00000398671.2	-	122853773,122854184,122854530,122855183,122855731	122854086,122854266,122854581,122855397,122855737	0.500000
heart_left_ventricle_female_adult_53_years	chr3	14047155	14047206	14047205	-	High_confidence	76	82	179	8.700095	5.061846	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14040602	14047157	STRG.4670.1	-	14040602,14046812	14041628,14047157	0.932961
heart_left_ventricle_female_adult_53_years	chr1	35538538	35538553	35538538	-	RAMPAGE_only	3	3	12	0.583247	3.277613	chr1	35538308	35538616	SINE|Alu|AluSx	+	chr1	35451634	35554987	KIAA0319L|ENST00000440579.5	-	35451634,35453556,35454361,35456012,35460304,35462620,35466607,35470862,35474804,35478965,35506611,35554349,35554899	35451776,35453689,35454485,35456241,35460437,35462713,35466695,35470960,35474906,35479212,35507135,35554519,35554987	0.916667
heart_left_ventricle_female_adult_53_years	chr6	127330834	127330863	127330853	-	High_confidence	2	2	9	0.437435	2.750000	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.666667
heart_left_ventricle_female_adult_53_years	chr9	120534028	120534050	120534049	-	RAMPAGE_only	22	22	101	4.908992	5.544930	chr9	120533823	120534313	LINE|L2|L2c	+	chr9	120518599	120532555	CDK5RAP2|ENST00000482047.1	-	120518599,120524985,120527805,120528743,120529977,120532466	120518645,120525078,120527925,120528797,120530140,120532555	0.752475
heart_left_ventricle_female_adult_53_years	chr4	48012937	48012945	48012937	-	High_confidence	3	3	7	0.340227	2.807355	chr4	48012591	48013262	LTR|ERV1|MER4-int	-	chr4	47935976	48012944	CNGA1|NM_000087.3	-	47935976,47940762,47942040,47943180,47943370,47949832,47951352,47952582,47981392,48010793,48012888	47937829,47940869,47942148,47943288,47943412,47949895,47951469,47952703,47981500,48010893,48012944	1.000000
heart_left_ventricle_female_adult_53_years	chrX	73994915	73994946	73994945	+	RAMPAGE_only	2	2	6	0.291623	2.584963	chrX	73994826	73995038	SINE|Alu|AluSp	-	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.833333
heart_left_ventricle_female_adult_53_years	chr16	11587465	11587475	11587465	-	High_confidence	3	3	9	0.437435	2.750000	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.888889
heart_left_ventricle_female_adult_53_years	chr19	34860548	34860576	34860575	-	High_confidence	4	4	10	0.486039	2.646439	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.700000
heart_left_ventricle_female_adult_53_years	chr11	11963601	11964188	11963664	-	RAMPAGE_only	104	104	1098	53.367066	6.778042	chr11	11963645	11963694	DNA|hAT-Ac|OldhAT1	-	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.989982
heart_left_ventricle_female_adult_53_years	chr6	43025303	43025319	43025307	+	High_confidence	8	8	19	0.923474	3.721612	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.947368
heart_left_ventricle_female_adult_53_years	chr6	123419016	123419068	123419016	-	RAMPAGE_only	8	8	26	1.263701	4.483856	chr6	123419006	123419359	LTR|ERVL|LTR47A	-	chr6	123216713	123636909	STRG.10399.2	-	123216713,123221486,123224092,123252411,123255080,123255866,123259623,123260611,123265317,123267706,123269848,123271138,123272963,123273336,123274640,123278317,123279055,123316456,123331878,123337618,123352538,123366134,123375604,123377715,123377865,123381369,123382117,123388521,123393623,123438062,123438943,123464905,123497192,123498448,123512302,123516140,123530505,123547339,123548453,123570922,123636753	123218740,123221522,123224131,123252435,123255125,123255902,123259662,123260638,123265338,123267751,123269866,123271186,123273011,123273363,123274670,123278347,123279082,123316495,123331929,123337669,123352586,123366182,123375631,123377742,123377898,123381390,123382147,123388551,123393677,123438122,123439003,123464983,123497252,123503901,123512362,123516206,123530565,123547372,123548612,123571132,123636909	0.692308
heart_left_ventricle_female_adult_53_years	chr16	68267936	68267937	68267936	+	RAMPAGE_only	105	106	107	5.200616	5.420191	chr16	68267617	68268452	LTR|ERVL|MER21B	+	chr16	68266601	68275001	SLC7A6|ENST00000563146.1	+	68266601,68273821,68274690	68266721,68273904,68275001	0.663551
heart_left_ventricle_female_adult_53_years	chr1	11991986	11992002	11991986	+	RAMPAGE_only	10	10	23	1.117889	4.277613	chr1	11991954	11992033	SINE|MIR|MIR	+	chr1	11980434	12013508	STRG.209.1	+	11980434,11981969,11982522,11989164,11992554,11996155,11997296,11998769,11998987,12001400,12001768,12001981,12003991,12004508,12004824,12005710,12006537,12007052,12009591,12011495	11980484,11982114,11982590,11989343,11992690,11996318,11997421,11998878,11999095,12001554,12001836,12002103,12004118,12004613,12004927,12005931,12006693,12007249,12009726,12013508	0.608696
heart_left_ventricle_female_adult_53_years	chr1	148900909	148900917	148900909	+	RAMPAGE_only	7	7	15	0.729058	3.324863	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148889783	148932725	PDE4DIP|ENST00000612094.1	+	148889783,148929196,148932112	148889894,148931923,148932725	0.533333
heart_left_ventricle_female_adult_53_years	chr9	127184267	127184312	127184288	-	High_confidence	4	4	19	0.923474	4.058814	chr9	127184045	127184341	SINE|Alu|AluJb	+	chr9	127180331	127184316	STRG.14421.1	-	127180331,127180604,127184065	127180510,127180749,127184316	0.684211
heart_left_ventricle_female_adult_53_years	chr16	23124399	23124461	23124399	-	RAMPAGE_only	8	8	45	2.187175	4.605757	chr16	23124017	23124439	DNA|TcMar-Tigger|Tigger15a	+	chr16	23061405	23149270	USP31|ENST00000219689.11	-	23061405,23072044,23073721,23079945,23082437,23084859,23085584,23087091,23087723,23090623,23102318,23105440,23106212,23106398,23108045,23148637	23069616,23072197,23073880,23080171,23082557,23084989,23085662,23087186,23087835,23090804,23102463,23105576,23106305,23106487,23108183,23149270	0.888889
heart_left_ventricle_female_adult_53_years	chr17	32479860	32479861	32479860	+	High_confidence	11	11	12	0.583247	3.277613	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.666667
heart_left_ventricle_female_adult_53_years	chr8	102275520	102275577	102275520	-	RAMPAGE_only	3	3	24	1.166493	3.886842	chr8	102275368	102275493	LINE|L1|L1ME3E	-	chr8	102271193	102276820	UBR5|ENST00000521566.1	-	102271193,102272528,102275520,102275707,102276773	102271245,102272772,102275619,102275828,102276820	1.000000
heart_left_ventricle_female_adult_53_years	chr2	37737566	37737567	37737566	-	High_confidence	7	7	7	0.340227	2.521641	chr2	37737141	37737728	LINE|L1|L1MEc	+	chr2	37646483	37738468	CDC42EP3|ENST00000453555.1	-	37646483,37688078,37719537,37738358	37646822,37688175,37719944,37738468	0.571429
heart_left_ventricle_female_adult_53_years	chr7	106249762	106249784	106249764	-	RAMPAGE_only	4	6	12	0.583247	3.095795	chr7	106249585	106249780	DNA|hAT-Charlie|MER58A	-	chr7	106248284	106285192	NAMPT|NM_005746.2	-	106248284,106253016,106254363,106261587,106263391,106268463,106269153,106272529,106274945,106277022,106284827	106251193,106253151,106254504,106261707,106263617,106268600,106269312,106272658,106275049,106277179,106285192	0.916667
heart_left_ventricle_female_adult_53_years	chr12	91179456	91179549	91179462	-	High_confidence	3617	3731	8189	398.017214	7.376207	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.937233
heart_left_ventricle_female_adult_53_years	chr4	151687295	151687315	151687304	-	High_confidence	11	11	36	1.749740	4.627987	chr4	151687184	151687573	LINE|L2|L2b	+	chr4	151670943	151687083	GATB|ENST00000507592.5	-	151670943,151672761,151679812,151686907	151671302,151672896,151679891,151687083	0.944444
heart_left_ventricle_female_adult_53_years	chr14	71002034	71002044	71002041	+	RAMPAGE_only	5	5	13	0.631851	3.180833	chr14	71001845	71002099	LTR|ERVL-MaLR|MLT1J	-	chr14	71013030	71110153	PCNX1|ENST00000554691.5	+	71013030,71019008,71023199,71026116,71026771,71028699,71033428,71033930,71036064,71045132,71046963,71047806,71050651,71051882,71055503,71073544,71076188,71088329,71089191,71101989,71103394,71105234,71108603,71109451,71109794	71013202,71019162,71023232,71026288,71026882,71028791,71033538,71034036,71036157,71045283,71047105,71047984,71050760,71052012,71055562,71073798,71076419,71088430,71089342,71102220,71103669,71105440,71109046,71109592,71110153	0.769231
heart_left_ventricle_female_adult_53_years	chr14	44912658	44912659	44912658	-	High_confidence	7	7	7	0.340227	2.521641	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	1.000000
heart_left_ventricle_female_adult_53_years	chr2	182056117	182056157	182056156	-	High_confidence	22	24	75	3.645291	5.455745	chr2	182055736	182056501	LINE|L1|L1MEi	-	chr2	182050785	182055925	STRG.4025.1	-	182050785,182052601,182055415	182051995,182052685,182055925	0.933333
heart_left_ventricle_female_adult_53_years	chr22	30971757	30971800	30971799	+	High_confidence	2	2	8	0.388831	2.521641	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.625000
heart_left_ventricle_female_adult_53_years	chr9	113484732	113484733	113484732	+	RAMPAGE_only	11	13	14	0.680454	3.392747	chr9	113484629	113484751	SINE|MIR|MIR	+	chr9	113501370	113507509	RGS3|ENST00000466314.5	+	113501370,113505017,113505441,113506387,113507286	113501434,113505092,113505523,113506493,113507509	0.785714
heart_left_ventricle_female_adult_53_years	chr8	129752911	129752916	129752911	-	High_confidence	4	4	10	0.486039	2.503258	chr8	129752564	129757710	LINE|L1|L1MA2	+	chr8	129748195	129752886	GSDMC|ENST00000522273.5	-	129748195,129749451,129749989,129750430,129751541,129751861,129752105,129752697	129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752886	0.900000
heart_left_ventricle_female_adult_53_years	chr1	205789924	205790420	205790335	-	RAMPAGE_only	75	77	447	21.725937	7.060431	chr1	205790260	205790370	LINE|L2|L2a	+	chr1	205789093	205801488	SLC41A1|ENST00000468057.5	-	205789093,205794869,205795343,205796923,205797903,205798668,205798956,205799758,205800952,205801320	205791718,205795018,205795478,205797003,205798051,205798815,205799101,205799830,205801060,205801488	0.997763
heart_left_ventricle_female_adult_53_years	chr1	33021455	33021456	33021455	-	RAMPAGE_only	21	22	24	1.166493	3.882045	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.875000
heart_left_ventricle_female_adult_53_years	chr8	123025813	123025814	123025813	-	High_confidence	6	6	8	0.388831	2.500000	chr8	123025804	123025900	SINE|MIR|MIRc	-	chr8	123015445	123025772	DERL1|ENST00000523036.1	-	123015445,123019194,123021446,123022683,123023712,123024985,123025722	123015585,123019305,123021499,123022779,123023739,123025050,123025772	0.750000
heart_left_ventricle_female_adult_53_years	chr3	141429538	141429539	141429538	+	RAMPAGE_only	9	10	12	0.583247	3.277613	chr3	141429492	141430039	LINE|L2|L2a	-	chr3	141431722	141442722	ZBTB38|ENST00000509813.1	+	141431722,141442388	141432243,141442722	0.583333
heart_left_ventricle_female_adult_53_years	chr4	94473166	94473167	94473166	+	RAMPAGE_only	7	7	8	0.388831	2.521641	chr4	94472838	94473253	LINE|L2|L2a	-	chr4	94455244	94665501	PDLIM5|ENST00000514743.5	+	94455244,94523723,94573350,94575942,94584985,94585564,94586407,94608058,94610160,94611068,94618003,94640275,94654459,94657426,94662421,94663977	94455384,94523875,94573393,94576034,94585003,94585737,94586444,94608178,94610304,94611200,94618191,94640450,94654640,94657547,94662537,94665501	0.500000
heart_left_ventricle_female_adult_53_years	chr9	92536651	92536659	92536651	-	High_confidence	5	5	9	0.437435	2.750000	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.888889
heart_left_ventricle_female_adult_53_years	chr15	76577007	76577011	76577007	-	High_confidence	3	3	7	0.340227	2.521641	chr15	76576480	76577164	LINE|L1|L1MA3	+	chr15	76471261	76576985	SCAPER|ENST00000569784.1	-	76471261,76504858,76567269,76574157,76576858	76471335,76504974,76567405,76574284,76576985	0.857143
heart_left_ventricle_female_adult_53_years	chr1	231814236	231814291	231814260	-	RAMPAGE_only	5	8	17	0.826266	3.750000	chr1	231814166	231814312	SINE|MIR|MIR	+	chr1	231809752	231847793	STRG.2520.2	-	231809752,231822679,231847518	231814291,231822834,231847793	0.941176
heart_left_ventricle_female_adult_53_years	chr7	134527596	134527597	134527596	+	High_confidence	8	8	8	0.388831	3.000000	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	1.000000
heart_left_ventricle_female_adult_53_years	chr9	83806304	83806305	83806304	-	RAMPAGE_only	8	8	9	0.437435	3.000000	chr9	83806166	83806294	LINE|L2|L2c	-	chr9	83739424	83817632	GKAP1|ENST00000376365.7	-	83739424,83741951,83742529,83748308,83753257,83780381,83784714,83788600,83799184,83806301,83816995,83817516	83739744,83742029,83742600,83748372,83753359,83780404,83784838,83788678,83799328,83806560,83817127,83817632	0.666667
heart_left_ventricle_female_adult_53_years	chr3	47513313	47513342	47513323	-	High_confidence	2	2	10	0.486039	3.169925	chr3	47512991	47513291	SINE|Alu|AluSx	-	chr3	47501658	47513339	ELP6|ENST00000449409.5	-	47501658,47504329,47510183,47511147,47513222	47501851,47504448,47510254,47511226,47513339	0.500000
heart_left_ventricle_female_adult_53_years	chr2	229232053	229232054	229232053	-	High_confidence	4	4	6	0.291623	2.584963	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	1.000000
heart_left_ventricle_female_adult_53_years	chr3	115110180	115110207	115110206	-	RAMPAGE_only	18	18	49	2.381590	5.012470	chr3	115109927	115110224	SINE|Alu|AluSx	+	chr3	114314500	115100295	STRG.5612.1	-	114314500,114317416,114350273,114380216,114389004,114500351,114693527,114801100,114900303,114974365,115071218,115100174	114316880,114339426,114351878,114380404,114389105,114500391,114693575,114801174,114900342,114974416,115071414,115100295	0.959184
heart_left_ventricle_female_adult_53_years	chr18	7946867	7946879	7946878	+	High_confidence	8	8	25	1.215097	4.243856	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.760000
heart_left_ventricle_female_adult_53_years	chr8	123025529	123025530	123025529	-	High_confidence	26	26	31	1.506720	4.091135	chr8	123025370	123025551	LINE|L2|L2b	+	chr8	123015441	123025650	DERL1|ENST00000519018.5	-	123015441,123019194,123021446,123022683,123023712,123024985,123025571	123015585,123019305,123021499,123022779,123023739,123025050,123025650	0.903226
heart_left_ventricle_female_adult_53_years	chr3	142054115	142054116	142054115	-	RAMPAGE_only	4	4	7	0.340227	2.584963	chr3	142053702	142054388	LINE|L1|L1ME1	+	chr3	141963851	142029157	TFDP2|ENST00000497579.5	-	141963851,141970072,141974047,141978519,141993537,141995019,142005440,142029041	141963963,141970141,141974191,141978682,141993585,141995141,142005544,142029157	0.857143
heart_left_ventricle_female_adult_53_years	chr5	178267375	178267400	178267399	-	RAMPAGE_only	9	9	30	1.458117	4.440224	chr5	178267373	178267564	SINE|MIR|MIR	-	chr5	178237619	178306934	COL23A1|ENST00000407622.2	-	178237619,178239140,178242041,178242340,178245941,178246253,178246390,178247525,178247774,178248191,178249116,178250060,178252543,178254948,178256352,178256865,178257522,178259720,178261721,178262216,178263207,178267306,178268729,178270336,178306874	178238700,178239179,178242128,178242394,178245968,178246307,178246453,178247552,178247831,178248254,178249206,178250105,178252597,178255026,178256397,178256928,178257567,178259747,178261748,178262252,178263324,178267333,178268756,178270372,178306934	1.000000
heart_left_ventricle_female_adult_53_years	chr19	38376013	38376033	38376013	+	RAMPAGE_only	16	16	50	2.430194	4.701468	chr19	38375972	38376110	SINE|MIR|MIR	-	chr19	38375008	38382753	PSMD8|ENST00000592035.5	+	38375008,38376159,38376351,38379239,38380898,38382116	38375509,38376232,38376454,38379405,38380999,38382753	0.600000
heart_left_ventricle_female_adult_53_years	chr19	45424386	45424391	45424386	-	High_confidence	3	3	8	0.388831	2.807355	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	0.875000
heart_left_ventricle_female_adult_53_years	chr2	40610929	40610930	40610929	-	High_confidence	53	53	54	2.624610	5.246604	chr2	40610851	40611261	LTR|ERVL-MaLR|MSTB	-	chr2	40115249	40611053	SLC8A1|ENST00000405269.5	-	40115249,40139400,40160764,40164853,40174824,40177751,40428472,40610929	40115629,40139676,40160864,40164984,40174842,40177855,40430304,40611053	0.981481
heart_left_ventricle_female_adult_53_years	chr12	111450015	111450016	111450015	+	RAMPAGE_only	24	24	25	1.215097	4.251629	chr12	111449926	111450222	SINE|Alu|AluSq2	-	chr12	111434861	111451623	SH2B3|NM_001291424.1	+	111434861,111446752,111446941,111447124,111447329,111447655,111447982	111435027,111446854,111447033,111447219,111447544,111447827,111451623	0.960000
heart_left_ventricle_female_adult_53_years	chr8	144106364	144106396	144106364	+	High_confidence	4	4	13	0.631851	3.334679	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.769231
heart_left_ventricle_female_adult_53_years	chr6	17779598	17779599	17779598	-	RAMPAGE_only	5	5	7	0.340227	2.521641	chr6	17779257	17779571	SINE|Alu|AluSp	-	chr6	17759253	17794697	KIF13A|ENST00000502297.5	-	17759253,17764154,17771113,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571	17760877,17764946,17771218,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794697	1.000000
heart_left_ventricle_female_adult_53_years	chr9	120467870	120467899	120467870	-	RAMPAGE_only	2	2	10	0.486039	2.947703	chr9	120467655	120467825	SINE|Alu|AluJr	-	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.900000
heart_left_ventricle_female_adult_53_years	chr15	25346023	25346051	25346023	-	High_confidence	93	94	320	15.553243	6.431756	chr15	25345979	25347018	LINE|L1|L1ME2	+	chr15	25333727	25346031	UBE3A|ENST00000636667.1	-	25333727,25340084,25345979	25339257,25340228,25346031	0.987500
heart_left_ventricle_female_adult_53_years	chr8	123202407	123202415	123202414	-	High_confidence	6	7	11	0.534643	2.550341	chr8	123202116	123202636	LINE|L2|L2b	+	chr8	123201171	123202743	FAM83A-AS1|ENST00000520576.5	-	123201171,123202207	123201982,123202743	1.000000
heart_left_ventricle_female_adult_53_years	chr1	21879004	21879038	21879004	-	RAMPAGE_only	2	2	11	0.534643	3.121928	chr1	21878794	21878955	SINE|MIR|MIR3	-	chr1	21865716	21896271	STRG.361.2	-	21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21888667,21889980,21890426,21890584,21893588,21895921,21896174	21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21888718,21890141,21890485,21890694,21893663,21895966,21896271	0.909091
heart_left_ventricle_female_adult_53_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	15	15	17	0.826266	3.500000	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.529412
heart_left_ventricle_female_adult_53_years	chr17	75833271	75833307	75833306	-	RAMPAGE_only	10	10	29	1.409513	4.349192	chr17	75833179	75833712	LINE|L2|L2a	+	chr17	75827231	75831162	STRG.23253.1	-	75827231,75828786,75830027,75830361,75830577,75831097	75828086,75828983,75830151,75830482,75830661,75831162	0.793103
heart_left_ventricle_female_adult_53_years	chr3	138396392	138396396	138396392	+	RAMPAGE_only	13	13	35	1.701136	4.312036	chr3	138396211	138396395	SINE|MIR|MIR	-	chr3	138349261	138402362	MRAS|ENST00000474559.1	+	138349261,138372865,138397323,138398468,138400533,138402169	138349379,138373076,138397477,138398568,138400613,138402362	0.914286
heart_left_ventricle_female_adult_53_years	chr1	52708380	52708403	52708387	-	RAMPAGE_only	4	4	15	0.729058	3.056565	chr1	52708320	52708479	LINE|L2|L2c	+	chr1	52684450	52698366	COA7|ENST00000371538.4	-	52684450,52692726,52698220	52688168,52692867,52698366	1.000000
heart_left_ventricle_female_adult_53_years	chr12	20504609	20504610	20504609	+	RAMPAGE_only	15	15	16	0.777662	3.506891	chr12	20504432	20504963	LTR|ERVL-MaLR|MLT1D	-	chr12	20571863	20684107	PDE3A|NM_001244683.1	+	20571863,20613442,20616229,20621295,20629907,20633692,20634901,20637099,20639845,20646489,20646750,20648687,20650444,20653946,20680029	20572171,20613700,20616384,20621411,20630127,20633778,20635056,20637237,20639957,20646603,20646950,20648891,20650600,20654205,20684107	0.937500
heart_left_ventricle_female_adult_53_years	chr16	23141233	23141254	23141233	-	RAMPAGE_only	4	5	10	0.486039	2.921928	chr16	23140602	23141239	LINE|L2|L2	+	chr16	23061405	23149270	USP31|ENST00000219689.11	-	23061405,23072044,23073721,23079945,23082437,23084859,23085584,23087091,23087723,23090623,23102318,23105440,23106212,23106398,23108045,23148637	23069616,23072197,23073880,23080171,23082557,23084989,23085662,23087186,23087835,23090804,23102463,23105576,23106305,23106487,23108183,23149270	1.000000
heart_left_ventricle_female_adult_53_years	chr5	108147034	108147046	108147045	-	RAMPAGE_only	5	5	9	0.437435	2.725481	chr5	108146850	108147199	LTR|ERVL-MaLR|MLT1A0	-	chr5	107878236	108367954	FBXL17|ENST00000496714.1	-	107878236,108020924,108186116,108224120,108348398,108364737,108367830	107881179,108021001,108186247,108224228,108348530,108364995,108367954	0.777778
heart_left_ventricle_female_adult_53_years	chr16	58435718	58435741	58435734	+	RAMPAGE_only	3	3	14	0.680454	3.238901	chr16	58435719	58435927	LTR|ERVL|LTR33	-	chr16	58422673	58441040	STRG.21706.3	+	58422673,58433809,58435691,58437155	58423348,58433948,58435823,58441040	0.928571
heart_left_ventricle_female_adult_53_years	chr1	201360555	201360556	201360555	-	High_confidence	20	20	20	0.972078	4.021928	chr1	201360361	201360542	SINE|MIR|MIR	-	chr1	201359033	201361357	STRG.2180.23	-	201359033,201359622,201361213	201359255,201359663,201361357	0.500000
heart_left_ventricle_female_adult_53_years	chr2	206847099	206847100	206847099	+	RAMPAGE_only	8	8	11	0.534643	2.913977	chr2	206847063	206847472	LINE|L2|L2c	-	chr2	206939553	206969474	CPO|NM_173077.2	+	206939553,206949616,206955462,206958300,206959630,206960851,206962411,206968262,206969173	206939667,206949713,206955564,206958405,206959741,206960942,206962614,206968347,206969474	1.000000
heart_left_ventricle_female_adult_53_years	chr5	151669663	151669697	151669663	-	RAMPAGE_only	8	8	27	1.312305	4.083856	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.925926
heart_left_ventricle_female_adult_53_years	chr3	25737366	25737367	25737366	-	RAMPAGE_only	4	4	7	0.340227	2.584963	chr3	25737106	25737338	SINE|MIR|MIRb	-	chr3	25719278	25736346	NGLY1|ENST00000496726.5	-	25719278,25720013,25729132,25733871	25719635,25720191,25729318,25736346	0.714286
heart_left_ventricle_female_adult_53_years	chr14	23581370	23581371	23581370	-	RAMPAGE_only	18	18	18	0.874870	3.794653	chr14	23580443	23582015	LTR|ERV1|LTR12C	+	chr14	23412737	23435718	MYH7|ENST00000355349.3	-	23412737,23413758,23414006,23414994,23415380,23415628,23416003,23416867,23417152,23417502,23418209,23419176,23419482,23419844,23420957,23422179,23423546,23423906,23424768,23425281,23425694,23425963,23426776,23427239,23427584,23428499,23428954,23429228,23429774,23430559,23430900,23431417,23431584,23431760,23432478,23432638,23433083,23433531,23434193,23435619	23412871,23413893,23414102,23415270,23415506,23415832,23416312,23416992,23417318,23417686,23418406,23419295,23419609,23420234,23421048,23422325,23423723,23424149,23425024,23425418,23425818,23426081,23426864,23427307,23427894,23428670,23429104,23429347,23429913,23430663,23430999,23431481,23431677,23431869,23432506,23432795,23433227,23433740,23434249,23435718	1.000000
heart_left_ventricle_female_adult_53_years	chr15	80059915	80059926	80059918	+	High_confidence	101	110	201	9.769381	5.016837	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.990050
heart_left_ventricle_female_adult_53_years	chr13	32527432	32527512	32527432	-	RAMPAGE_only	6	6	45	2.187175	4.898153	chr13	32527156	32527383	SINE|MIR|MIRc	-	chr13	32432830	32522275	N4BP2L2|ENST00000509076.1	-	32432830,32436360,32438651,32442387,32517856,32521372	32432972,32436405,32438737,32444124,32518003,32522275	0.777778
heart_left_ventricle_female_adult_53_years	chr2	167210779	167210895	167210894	+	RAMPAGE_only	155	155	603	29.308143	4.986978	chr2	167210892	167210985	DNA|hAT-Ac|OldhAT1	-	chr2	167187282	167259753	XIRP2|NM_001199144.1	+	167187282,167210734,167218165,167239854,167240663,167241776,167242568,167254031,167257856	167187531,167210895,167218300,167239965,167240736,167241910,167251947,167254165,167259753	0.996683
heart_left_ventricle_female_adult_53_years	chr10	122029057	122029066	122029057	+	RAMPAGE_only	35	38	74	3.596687	4.644223	chr10	122029026	122029558	LINE|L1|L1MD	-	chr10	122021992	122083007	TACC2|ENST00000491540.1	+	122021992,122033093,122050437,122082655	122022014,122033153,122050550,122083007	0.932432
heart_left_ventricle_female_adult_53_years	chr8	99892029	99892057	99892056	-	RAMPAGE_only	419	419	755	36.695933	4.955869	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.989404
heart_left_ventricle_female_adult_53_years	chr8	86417214	86417236	86417235	+	High_confidence	201	204	436	21.191294	6.935229	chr8	86417268	86417372	DNA|hAT-Charlie|MER58D	+	chr8	86417222	86431665	WWP1|ENST00000521079.1	+	86417222,86425222,86427642,86430696,86431405,86431614	86417279,86425318,86427817,86430751,86431490,86431665	0.685780
heart_left_ventricle_female_adult_53_years	chr9	121313963	121314021	121314020	+	RAMPAGE_only	42	43	328	15.942074	5.694823	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
heart_left_ventricle_female_adult_53_years	chr7	137254962	137254976	137254962	-	RAMPAGE_only	2	2	9	0.437435	2.503258	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	1.000000
heart_left_ventricle_female_adult_53_years	chr3	33838228	33838233	33838228	+	RAMPAGE_only	14	15	33	1.603928	4.625000	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.757576
heart_left_ventricle_female_adult_53_years	chr1	150457342	150457344	150457342	+	RAMPAGE_only	2	4	6	0.291623	2.584963	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150446223	150473556	STRG.1637.4	+	150446223,150457287,150460059,150464526,150470560,150471882	150446401,150457570,150460317,150464727,150471742,150473556	1.000000
heart_left_ventricle_female_adult_53_years	chr20	38985938	38985984	38985964	+	High_confidence	46	46	243	11.810744	6.453448	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38985810	39038636	STRG.25832.3	+	38985810,38988812,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38986012,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39038636	0.962963
heart_left_ventricle_female_adult_53_years	chr14	90405478	90405533	90405532	+	RAMPAGE_only	20	20	76	3.693895	4.424141	chr14	90405466	90405547	SINE|tRNA-RTE|MamSINE1	+	chr14	90396982	90408261	CALM1|ENST00000356978.8	+	90396982,90400064,90401258,90403861,90404378,90404688	90397233,90400095,90401402,90403968,90404514,90408261	0.973684
heart_left_ventricle_female_adult_53_years	chr2	71417057	71417059	71417057	+	RAMPAGE_only	4	7	9	0.437435	2.947703	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	1.000000
heart_left_ventricle_female_adult_53_years	chr11	47486750	47486785	47486750	-	High_confidence	2	2	11	0.534643	2.646439	chr11	47486415	47486707	SINE|Alu|AluSz6	-	chr11	47477295	47486799	CELF1|ENST00000422993.2	-	47477295,47478876,47482694,47484388,47486749	47477425,47478952,47482856,47484523,47486799	0.818182
heart_left_ventricle_female_adult_53_years	chr3	33864109	33864125	33864124	+	High_confidence	3	4	11	0.534643	3.095795	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33863895	33866468	PDCD6IP|ENST00000473593.1	+	33863895,33865242,33866350	33864129,33865430,33866468	0.545455
heart_left_ventricle_female_adult_53_years	chr13	113485593	113485630	113485593	-	RAMPAGE_only	6	6	18	0.874870	3.683542	chr13	113485255	113485582	LINE|RTE-X|L4_B_Mam	-	chr13	113459311	113490608	DCUN1D2|ENST00000438545.6	-	113459311,113461053,113462739,113474123,113480574,113483839,113490432	113459408,113461136,113462891,113474254,113480743,113484056,113490608	0.722222
heart_left_ventricle_female_adult_53_years	chr20	3873653	3873810	3873653	+	RAMPAGE_only	38	46	234	11.373309	5.607521	chr20	3873549	3873828	LTR|ERVL-MaLR|MLT1A0	+	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.995726
heart_left_ventricle_female_adult_53_years	chr1	151017832	151017869	151017868	+	RAMPAGE_only	4	4	12	0.583247	3.095795	chr1	151017915	151018141	SINE|MIR|MIRc	+	chr1	151024741	151035711	PRUNE1|ENST00000368934.1	+	151024741,151025514,151027232,151033805	151024795,151025673,151027327,151035711	0.500000
heart_left_ventricle_female_adult_53_years	chr9	92720722	92720732	92720722	-	RAMPAGE_only	2	2	8	0.388831	2.750000	chr9	92720689	92720791	DNA|TcMar-Tigger|Tigger19b	-	chr9	92711362	92764801	BICD2|NM_001003800.1	-	92711362,92717796,92718538,92720299,92722655,92729023,92764504	92715463,92717948,92719582,92720755,92722808,92729236,92764801	1.000000
heart_left_ventricle_female_adult_53_years	chr1	226364247	226364262	226364261	-	High_confidence	7	8	13	0.631851	3.251629	chr1	226364119	226364211	SINE|MIR|MIRb	-	chr1	226361318	226364372	PARP1|ENST00000463968.5	-	226361318,226361968,226363098,226363942	226361541,226362083,226363160,226364372	0.923077
heart_left_ventricle_female_adult_53_years	chr22	26484045	26484090	26484080	+	High_confidence	3	3	10	0.486039	2.646439	chr22	26484072	26484276	SINE|MIR|MIRb	+	chr22	26483883	26491938	SRRD|NM_001013694.2	+	26483883,26486022,26488028,26488389,26490043,26491024,26491462	26484099,26486063,26488288,26488488,26490198,26491070,26491938	1.000000
heart_left_ventricle_female_adult_53_years	chr2	182035660	182035664	182035663	+	RAMPAGE_only	5	5	11	0.534643	3.277613	chr2	182035463	182035860	LTR|ERVL-MaLR|MSTA	+	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.909091
heart_left_ventricle_female_adult_53_years	chr4	2867795	2867851	2867814	+	High_confidence	13	13	54	2.624610	4.758127	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.925926
heart_left_ventricle_female_adult_53_years	chr12	20442523	20442540	20442539	+	RAMPAGE_only	3	3	7	0.340227	2.807355	chr12	20442432	20442624	LTR|ERVL-MaLR|MLT1I	-	chr12	20369244	20684107	PDE3A|NM_000921.4	+	20369244,20556659,20613442,20616229,20621295,20629907,20633692,20634901,20637099,20639845,20646489,20646750,20648687,20650444,20653946,20680029	20370244,20556710,20613700,20616384,20621411,20630127,20633778,20635056,20637237,20639957,20646603,20646950,20648891,20650600,20654205,20684107	0.714286
heart_left_ventricle_female_adult_53_years	chr13	37934743	37934767	37934743	+	High_confidence	13	13	61	2.964837	5.512544	chr13	37934381	37935273	LTR|ERV1|LTR1D	-	chr13	37934564	38048169	LINC02334|ENST00000617568.1	+	37934564,37997811,38013403,38029648,38043950	37935037,37997937,38013501,38029691,38048169	0.901639
heart_left_ventricle_female_adult_53_years	chr18	28171773	28171783	28171773	-	RAMPAGE_only	13	13	21	1.020682	3.594466	chr18	28171751	28171822	SINE|MIR|MIR3	-	chr18	27950962	28177446	CDH2|NM_001792.4	-	27950962,27963356,27982943,27984999,27985527,27988523,27990096,27992654,27993499,28002996,28005848,28009716,28011845,28013682,28147672,28176962	27952359,27963521,27983083,27985233,27985761,27988666,27990350,27992840,27993637,28003169,28005993,28009872,28011992,28013909,28147784,28177446	0.904762
heart_left_ventricle_female_adult_53_years	chr7	7689193	7689239	7689215	+	High_confidence	24	24	175	8.505680	6.095064	chr7	7689061	7689544	LTR|ERVL-MaLR|MLT1L	+	chr7	7689066	7721475	STRG.10852.4	+	7689066,7720912	7689460,7721475	0.691429
heart_left_ventricle_female_adult_53_years	chr22	35611939	35611962	35611961	-	RAMPAGE_only	15	16	40	1.944155	3.970840	chr22	35611957	35612110	SINE|MIR|MIRb	-	chr22	35606763	35615713	MB|ENST00000401702.5	-	35606763,35610883,35615573	35607443,35611106,35615713	0.950000
heart_left_ventricle_female_adult_53_years	chr9	129488843	129488905	129488856	+	High_confidence	28	28	77	3.742499	4.613119	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.961039
heart_left_ventricle_female_adult_53_years	chr11	11917362	11917363	11917362	+	High_confidence	7	7	9	0.437435	2.725481	chr11	11917160	11917904	LINE|L1|L1MC4	+	chr11	11917243	11956421	STRG.15969.4	+	11917243,11920155,11920341,11922723,11929433,11930043,11930695,11933003,11933830,11936302,11938256,11940428,11942334,11947944,11948477,11949888,11950363,11952740,11954896,11955033,11956000	11917416,11920251,11920494,11922891,11929565,11930120,11930751,11933116,11933935,11936510,11938372,11940548,11943112,11948120,11948558,11950004,11950482,11952871,11954944,11955164,11956421	1.000000
heart_left_ventricle_female_adult_53_years	chr13	20832881	20832903	20832902	-	High_confidence	72	75	200	9.720777	5.458829	chr13	20832849	20832905	SINE|tRNA|LFSINE_Vert	-	chr13	20777474	20832900	STRG.18582.3	-	20777474,20786964,20787480,20788485,20790461,20796075,20796763,20799164,20800155,20800830,20807456,20808435,20809082,20809790,20821703,20822131,20832786	20783919,20787057,20787598,20788616,20790580,20796256,20797057,20799339,20800325,20800990,20807634,20808581,20809225,20809967,20821878,20822289,20832900	0.960000
heart_left_ventricle_female_adult_53_years	chr12	10710653	10710654	10710653	-	High_confidence	238	238	239	11.616329	5.259492	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.786611
heart_left_ventricle_female_adult_53_years	chr8	22417501	22417551	22417506	+	RAMPAGE_only	4	4	20	0.972078	3.090033	chr8	22417490	22417611	SINE|Alu|FLAM_C	-	chr8	22367536	22422736	SLC39A14|NM_001135153.1	+	22367536,22404695,22408309,22412036,22414779,22415768,22416072,22417650,22419551	22367737,22404980,22408496,22412206,22414902,22415957,22416280,22417835,22422736	0.950000
heart_left_ventricle_female_adult_53_years	chr14	50159440	50159441	50159440	-	RAMPAGE_only	28	28	29	1.409513	4.593069	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.965517
heart_left_ventricle_female_adult_53_years	chr14	58424077	58424096	58424077	-	RAMPAGE_only	3	3	7	0.340227	2.521641	chr14	58423952	58424081	LINE|CR1|L3	-	chr14	58408663	58427114	TIMM9|ENST00000556007.6	-	58408663,58410842,58411906,58424007,58427053	58409099,58410938,58411971,58424095,58427114	0.857143
heart_left_ventricle_female_adult_53_years	chr12	113948835	113948836	113948835	-	RAMPAGE_only	9	9	9	0.437435	2.947703	chr12	113948646	113948806	SINE|MIR|MIRb	-	chr12	113816741	113966306	RBM19|ENST00000545145.6	-	113816741,113823208,113844667,113858790,113914968,113918391,113920610,113924696,113927053,113937006,113939959,113942323,113945827,113946353,113947333,113948832,113950082,113952511,113955130,113957781,113959211,113959864,113960058,113962231,113966191	113818186,113823321,113844788,113858896,113915085,113918447,113920690,113924757,113927229,113937136,113940160,113942434,113945924,113946475,113947464,113949036,113950154,113952590,113955211,113958050,113959404,113959903,113960178,113962414,113966306	1.000000
heart_left_ventricle_female_adult_53_years	chr11	65889891	65889895	65889894	-	RAMPAGE_only	7	7	12	0.583247	3.095795	chr11	65889634	65890000	LINE|L2|L2c	+	chr11	65883739	65888539	FIBP|NM_198897.1	-	65883739,65884391,65884569,65884934,65885077,65885508,65886321,65887599,65887933,65888333	65884043,65884489,65884656,65884998,65885186,65885663,65886422,65887726,65888132,65888539	0.750000
heart_left_ventricle_female_adult_53_years	chr1	75376210	75376211	75376210	-	RAMPAGE_only	9	9	12	0.583247	2.845351	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.916667
heart_left_ventricle_female_adult_53_years	chr6	79631273	79631329	79631302	+	High_confidence	42	42	160	7.776622	5.684442	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.993750
heart_left_ventricle_female_adult_53_years	chr3	73623562	73623586	73623562	+	High_confidence	6	6	13	0.631851	3.084963	chr3	73623488	73623574	SINE|MIR|MIRc	-	chr3	73623567	73627899	PDZRN3-AS1|NR_046681.1	+	73623567,73625411	73623965,73627899	0.923077
heart_left_ventricle_female_adult_53_years	chr10	27509927	27509928	27509927	+	RAMPAGE_only	7	7	7	0.340227	2.807355	chr10	27509948	27510212	LINE|L2|L2c	+	chr10	27504376	27538489	RAB18|ENST00000465772.5	+	27504376,27509874,27526827,27532506,27533734,27537875	27504437,27509930,27526889,27532579,27533853,27538489	0.857143
heart_left_ventricle_female_adult_53_years	chr17	59651207	59651256	59651207	+	RAMPAGE_only	8	8	25	1.215097	3.783465	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.880000
heart_left_ventricle_female_adult_53_years	chr8	27977120	27977126	27977125	-	RAMPAGE_only	16	18	28	1.360909	4.155046	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.964286
heart_left_ventricle_female_adult_53_years	chr10	103395864	103395877	103395864	-	High_confidence	2	4	8	0.388831	2.521641	chr10	103395615	103395992	LINE|RTE-X|L4_C_Mam	+	chr10	103389049	103396074	ATP5MD|ENST00000369811.5	-	103389049,103392190,103392370,103395745	103389166,103392283,103392466,103396074	0.875000
heart_left_ventricle_female_adult_53_years	chr5	150115567	150115618	150115567	-	RAMPAGE_only	2	3	9	0.437435	3.000000	chr5	150115432	150115598	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.888889
heart_left_ventricle_female_adult_53_years	chr13	51382047	51382063	51382047	-	RAMPAGE_only	3	3	8	0.388831	2.807355	chr13	51381694	51382000	SINE|Alu|AluSq4	-	chr13	51365502	51384691	INTS6|ENST00000483441.5	-	51365502,51367804,51368938,51374207,51374653,51376047,51378238,51379461,51382028,51383328,51383588	51365845,51367898,51369310,51374439,51374796,51376174,51378454,51379572,51382123,51383461,51384691	0.875000
heart_left_ventricle_female_adult_53_years	chr2	37737597	37737609	37737608	-	High_confidence	24	25	44	2.138571	5.036616	chr2	37737141	37737728	LINE|L1|L1MEc	+	chr2	37646483	37738468	CDC42EP3|ENST00000453555.1	-	37646483,37688078,37719537,37738358	37646822,37688175,37719944,37738468	0.750000
heart_left_ventricle_female_adult_53_years	chr1	21035303	21035338	21035328	-	RAMPAGE_only	5	5	21	1.020682	3.916127	chr1	21035285	21036410	LTR|ERV1|MER52D	+	chr1	20806469	21050994	EIF4G3|ENST00000264211.12	-	20806469,20810737,20813157,20817391,20825099,20827616,20829146,20840855,20849414,20851257,20853559,20854977,20857402,20860384,20862227,20864475,20865115,20879322,20886200,20893516,20895367,20899696,20904882,20941490,20950002,20969473,20973001,20980333,20981047,21002712,21050865	20807500,20810884,20813239,20817538,20825198,20827698,20829272,20841028,20849530,20851478,20853677,20855071,20857497,20860517,20862332,20864712,20865262,20879520,20886371,20893636,20895501,20899943,20904971,20942330,20950111,20969596,20973099,20980448,20981227,21002808,21050994	0.904762
heart_left_ventricle_female_adult_53_years	chr11	119314498	119314564	119314498	-	RAMPAGE_only	4	4	28	1.360909	4.356558	chr11	119314166	119314455	SINE|Alu|AluJr	-	chr11	119308528	119317116	MCAM|ENST00000264036.5	-	119308528,119310348,119310755,119311089,119311279,119311529,119311807,119312051,119312265,119312526,119312769,119314488,119314678,119314832,119315138,119317034	119309915,119310466,119310903,119311185,119311421,119311651,119311949,119312170,119312428,119312648,119312949,119314576,119314749,119315040,119315263,119317116	0.964286
heart_left_ventricle_female_adult_53_years	chr19	55676618	55676635	55676633	+	High_confidence	2	5	9	0.437435	2.947703	chr19	55676523	55676713	SINE|MIR|MIRb	-	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	1.000000
heart_left_ventricle_female_adult_53_years	chr10	4671529	4671531	4671529	+	High_confidence	4	7	8	0.388831	2.521641	chr10	4671287	4671738	LINE|L1|L1MB7	-	chr10	4671472	4677000	STRG.14707.1	+	4671472,4676664	4671648,4677000	0.625000
heart_left_ventricle_female_adult_53_years	chrX	147937500	147937519	147937518	+	RAMPAGE_only	5	5	11	0.534643	3.459432	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.27987.6	+	147940580,147943130,147944868,147945533,147948733	147940662,147943326,147945051,147945616,147950315	1.000000
heart_left_ventricle_female_adult_53_years	chr6	137218788	137218822	137218821	-	High_confidence	8	8	25	1.215097	4.349649	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.920000
heart_left_ventricle_female_adult_53_years	chr17	19386334	19386335	19386334	-	High_confidence	8	9	12	0.583247	3.277613	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.916667
heart_left_ventricle_female_adult_53_years	chr18	36122242	36122260	36122242	-	High_confidence	3	4	8	0.388831	2.521641	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.875000
heart_left_ventricle_female_adult_53_years	chr6	118651542	118651593	118651592	-	High_confidence	10	10	35	1.701136	4.312036	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.971429
heart_left_ventricle_female_adult_53_years	chr14	106845830	106845859	106845858	-	RAMPAGE_only	3	3	6	0.291623	2.584963	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106810441	106811131	IGHV3-74|ENST00000424969.2	-	106810441,106810849	106810746,106811131	0.500000
heart_left_ventricle_female_adult_53_years	chr4	119217569	119217624	119217623	+	RAMPAGE_only	8	8	22	1.069285	3.784184	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212740	119294746	STRG.7318.2	+	119212740,119214069,119217549,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119212873,119214222,119217673,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119294746	0.818182
heart_left_ventricle_female_adult_53_years	chr1	21227165	21227166	21227165	-	RAMPAGE_only	6	7	9	0.437435	2.750000	chr1	21227023	21227146	SINE|Alu|AluJr4	-	chr1	21219813	21222081	ECE1|ENST00000531334.1	-	21219813,21221746	21220131,21222081	0.555556
heart_left_ventricle_female_adult_53_years	chrX	155719045	155719057	155719045	-	RAMPAGE_only	12	13	25	1.215097	4.418296	chrX	155718901	155722240	LINE|L1|L1M1	+	chrX	155489010	155612961	TMLHE|NM_018196.3	-	155489010,155492356,155506897,155511672,155513985,155524455,155545095,155612791	155491666,155492495,155507134,155511792,155514265,155524632,155545277,155612961	0.760000
heart_left_ventricle_female_adult_53_years	chr22	42721166	42721167	42721166	-	High_confidence	10	10	11	0.534643	2.721928	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.909091
heart_left_ventricle_female_adult_53_years	chr2	219425186	219425187	219425186	+	RAMPAGE_only	6	6	8	0.388831	2.807355	chr2	219424901	219425196	SINE|Alu|AluSg	-	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	0.875000
heart_left_ventricle_female_adult_53_years	chr3	188153195	188153229	188153195	+	High_confidence	3	3	8	0.388831	2.750000	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	1.000000
heart_left_ventricle_female_adult_53_years	chr16	58438983	58439049	58439048	+	RAMPAGE_only	50	51	157	7.630810	5.707898	chr16	58438913	58439115	LTR|ERVL-MaLR|MLT1K	+	chr16	58422673	58441040	STRG.21706.3	+	58422673,58433809,58435691,58437155	58423348,58433948,58435823,58441040	0.968153
heart_left_ventricle_female_adult_53_years	chr3	48924744	48924783	48924761	+	High_confidence	8	8	16	0.777662	3.625000	chr3	48924715	48924993	SINE|Alu|AluSc8	-	chr3	48924715	48945181	ARIH2|ENST00000463204.5	+	48924715,48927461,48945135	48924839,48927813,48945181	0.750000
heart_left_ventricle_female_adult_53_years	chr3	9973632	9973659	9973632	-	RAMPAGE_only	2	2	19	0.923474	3.836592	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.947368
heart_left_ventricle_female_adult_53_years	chr1	24057083	24057256	24057083	-	RAMPAGE_only	18	22	103	5.006200	5.886465	chr1	24056988	24057097	DNA|hAT-Charlie|MER20	-	chr1	24056034	24066579	MYOM3|ENST00000338909.9	-	24056034,24058923,24061059,24061272,24061945,24063125,24063491,24064071,24065890,24066106	24057627,24058979,24061082,24061309,24062109,24063234,24063530,24064159,24066001,24066579	1.000000
heart_left_ventricle_female_adult_53_years	chr9	120471802	120471805	120471802	-	RAMPAGE_only	2	3	7	0.340227	2.807355	chr9	120471770	120471851	LINE|L2|L2	+	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.714286
heart_left_ventricle_female_adult_53_years	chrX	7147267	7147288	7147267	+	High_confidence	5	6	14	0.680454	3.324863	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.785714
heart_left_ventricle_female_adult_53_years	chr17	77127872	77127877	77127872	+	High_confidence	247	247	405	19.684573	6.710221	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.802469
heart_left_ventricle_female_adult_53_years	chr16	30354648	30354681	30354665	-	High_confidence	2	3	13	0.631851	3.251629	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.923077
heart_left_ventricle_female_adult_53_years	chr17	82670253	82670263	82670253	-	RAMPAGE_only	4	4	10	0.486039	2.503258	chr17	82670178	82670484	SINE|Alu|AluSz6	-	chr17	82657792	82664895	RAB40B|ENST00000570676.1	-	82657792,82658490,82659579,82660986,82664495	82658134,82658713,82659657,82661047,82664895	0.700000
heart_left_ventricle_female_adult_53_years	chr12	110921445	110921463	110921445	-	High_confidence	5	5	13	0.631851	3.026987	chr12	110921375	110921609	LINE|L2|L2a	+	chr12	110910818	110920600	MYL2|NM_000432.3	-	110910818,110913095,110913245,110914185,110915714,110919103,110920526	110911175,110913144,110913324,110914290,110915790,110919193,110920600	1.000000
heart_left_ventricle_female_adult_53_years	chr7	44829216	44829349	44829348	-	RAMPAGE_only	99	104	204	9.915193	5.687677	chr7	44829318	44829620	SINE|Alu|AluSq2	+	chr7	44826790	44848077	H2AFV|ENST00000222690.10	-	44826790,44835528,44840898,44843276,44847968	44830163,44835658,44841012,44843354,44848077	1.000000
heart_left_ventricle_female_adult_53_years	chr3	46463632	46463643	46463632	-	High_confidence	4	4	9	0.437435	2.500000	chr3	46463529	46463617	LTR|Gypsy|MamGypsy2-LTR	-	chr3	46436004	46463671	LTF|NM_001199149.1	-	46436004,46437939,46439295,46441415,46443440,46445280,46446439,46447307,46448862,46449853,46450494,46454304,46455294,46455795,46456289,46459655,46463443	46436229,46438129,46439480,46441483,46443582,46445436,46446493,46447398,46449017,46450028,46450673,46454360,46455442,46455978,46456398,46459819,46463671	0.888889
heart_left_ventricle_female_adult_53_years	chr8	18851510	18851546	18851510	-	High_confidence	27	27	80	3.888311	5.223941	chr8	18851419	18851578	SINE|tRNA-Deu|AmnSINE2	-	chr8	18810867	18851531	STRG.12385.1	-	18810867,18851250	18810895,18851531	0.650000
heart_left_ventricle_female_adult_53_years	chr14	77710843	77710872	77710871	+	High_confidence	4	4	15	0.729058	2.807355	chr14	77710914	77711213	LINE|L1|L1MA1	+	chr14	77710643	77717584	SLIRP|ENST00000556956.1	+	77710643,77715771,77717495	77710896,77715879,77717584	0.933333
heart_left_ventricle_female_adult_53_years	chr6	4346920	4346928	4346920	-	High_confidence	3	3	9	0.437435	2.641604	chr6	4346798	4346936	SINE|MIR|MIRb	-	chr6	4341750	4347037	STRG.9293.3	-	4341750,4345722,4346632,4347009	4344866,4345806,4346869,4347037	0.777778
heart_left_ventricle_female_adult_53_years	chr12	7502482	7502525	7502503	-	High_confidence	3	3	15	0.729058	3.664498	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.933333
heart_left_ventricle_female_adult_53_years	chr7	6590253	6590263	6590262	+	High_confidence	5	5	9	0.437435	2.500000	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.555556
heart_left_ventricle_female_adult_53_years	chr4	114364914	114364967	114364914	-	High_confidence	27	28	85	4.131330	4.543739	chr4	114364772	114365325	LTR|ERVL-MaLR|MLT1E3	-	chr4	114334800	114364961	STRG.7282.1	-	114334800,114335128,114364807	114335026,114335244,114364961	0.858824
heart_left_ventricle_female_adult_53_years	chr16	46763151	46763246	46763230	-	High_confidence	303	318	1386	67.364985	7.419386	chr16	46763076	46763184	SINE|MIR|MIRb	-	chr16	46727237	46763246	STRG.21511.3	-	46727237,46729023,46729593,46730592,46732207,46737710,46740056,46763039	46727377,46729133,46729687,46730698,46732668,46738143,46740147,46763246	0.906926
heart_left_ventricle_female_adult_53_years	chr7	112956581	112956619	112956618	-	RAMPAGE_only	6	8	18	0.874870	3.683542	chr7	112956597	112956681	LTR|ERVL-MaLR|MLT1M	+	chr7	112952766	112978009	STRG.11822.3	-	112952766,112956521,112973604,112977143	112954768,112956711,112973672,112978009	0.888889
heart_left_ventricle_female_adult_53_years	chr19	39354014	39354045	39354014	+	High_confidence	2	3	9	0.437435	2.750000	chr19	39353999	39354088	DNA|hAT-Charlie|MER117	-	chr19	39354003	39370115	SAMD4B|ENST00000599712.1	+	39354003,39356688,39369654	39354066,39357089,39370115	0.777778
heart_left_ventricle_female_adult_53_years	chr17	75441013	75441017	75441016	+	High_confidence	4	5	9	0.437435	2.750000	chr17	75440927	75441354	LINE|L2|L2a	-	chr17	75441158	75486380	TMEM94|ENST00000577380.5	+	75441158,75471799,75485427,75485870,75486289	75441243,75471929,75485547,75485998,75486380	0.777778
heart_left_ventricle_female_adult_53_years	chr6	42903071	42903072	42903071	-	High_confidence	9	10	11	0.534643	3.121928	chr6	42902632	42903629	LTR|ERVK|LTR5B	-	chr6	42894472	42902671	STRG.9807.1	-	42894472,42901283,42902524	42894755,42901328,42902671	0.818182
heart_left_ventricle_female_adult_53_years	chr18	50659295	50659357	50659295	+	RAMPAGE_only	6	6	22	1.069285	3.970573	chr18	50659243	50659313	DNA|hAT-Tip100|MER91B	-	chr18	50655953	50730101	STRG.23729.3	+	50655953,50663088,50715078,50721937,50725961,50729157	50656000,50664504,50715223,50722099,50726175,50730101	0.818182
heart_left_ventricle_female_adult_53_years	chr5	172958913	172958922	172958918	+	High_confidence	12	12	23	1.117889	3.208987	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.913043
heart_left_ventricle_female_adult_53_years	chr18	55119563	55119587	55119563	-	High_confidence	6	6	15	0.729058	3.640224	chr18	55119430	55119710	LINE|L2|L2	+	chr18	55108310	55119598	LINC01929|ENST00000592405.1	-	55108310,55116953,55119495	55108653,55117083,55119598	0.666667
heart_left_ventricle_female_adult_53_years	chr4	169697625	169697662	169697625	+	RAMPAGE_only	9	9	15	0.729058	3.506891	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169662721	169723183	CLCN3|ENST00000504131.6	+	169662721,169663113,169663526,169680049,169687657,169689042,169690529,169692113,169695611,169697188,169703997,169706867,169713078,169719906	169662738,169663114,169663617,169680207,169687757,169689230,169690652,169692320,169695692,169697734,169704184,169707266,169713295,169723183	1.000000
heart_left_ventricle_female_adult_53_years	chr8	86368938	86368954	86368938	+	RAMPAGE_only	3	3	12	0.583247	3.418296	chr8	86368776	86369052	LINE|L2|L2c	+	chr8	86374040	86467476	WWP1|ENST00000265428.4	+	86374040,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	0.916667
heart_left_ventricle_female_adult_53_years	chr1	202551797	202551798	202551797	+	RAMPAGE_only	4	4	7	0.340227	2.584963	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.857143
heart_left_ventricle_female_adult_53_years	chr1	89272850	89272887	89272886	-	High_confidence	5	7	18	0.874870	3.419382	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	1.000000
heart_left_ventricle_female_adult_53_years	chr11	123061178	123061323	123061322	-	High_confidence	31	37	167	8.116849	5.886113	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.946108
heart_left_ventricle_female_adult_53_years	chr12	10702260	10702261	10702260	-	High_confidence	10	10	10	0.486039	2.721928	chr12	10702238	10702535	SINE|Alu|AluSz	+	chr12	10699316	10702475	YBX3|ENST00000540975.5	-	10699316,10701253,10701959,10702411	10699654,10701353,10702134,10702475	1.000000
heart_left_ventricle_female_adult_53_years	chr1	179877288	179877293	179877288	-	High_confidence	3	5	11	0.534643	2.921928	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179839966	179877782	STRG.2031.1	-	179839966,179846106,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179840280,179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877782	0.909091
heart_left_ventricle_female_adult_53_years	chr10	73645586	73646000	73645999	-	RAMPAGE_only	56	56	428	20.802463	6.609872	chr10	73645821	73646123	SINE|Alu|AluY	-	chr10	73644880	73650013	STRG.15197.3	-	73644880,73649730	73648879,73650013	0.995327
heart_left_ventricle_female_adult_53_years	chr17	1659356	1659357	1659356	-	RAMPAGE_only	19	20	28	1.360909	3.717850	chr17	1659014	1659325	SINE|Alu|AluSx3	-	chr17	1650630	1684837	PRPF8|ENST00000572621.5	-	1650630,1651107,1651413,1651647,1653541,1653776,1655349,1656391,1656647,1658252,1658525,1659356,1659840,1660431,1660697,1660992,1661270,1661610,1661905,1673080,1673356,1673745,1674441,1675151,1675619,1675927,1676206,1676504,1676975,1677564,1678517,1678761,1679016,1679290,1679608,1680725,1680928,1681477,1681819,1682128,1683532,1684471	1650956,1651310,1651553,1651788,1653683,1654016,1655543,1656565,1656761,1658381,1658763,1659548,1660001,1660578,1660827,1661162,1661406,1661790,1662153,1673197,1673567,1673892,1674680,1675339,1675812,1676054,1676370,1676711,1677172,1677694,1678652,1678881,1679206,1679410,1679799,1680831,1681054,1681690,1682038,1682293,1683701,1684837	0.964286
heart_left_ventricle_female_adult_53_years	chr1	35320262	35320272	35320271	+	RAMPAGE_only	8	9	19	0.923474	3.683542	chr1	35320238	35320853	LTR|ERVL|MER21C	+	chr1	35269032	35359229	ZMYM4|ENST00000441447.1	+	35269032,35295926,35325359,35358924	35269085,35295988,35325405,35359229	0.578947
heart_left_ventricle_female_adult_53_years	chr2	69461194	69461209	69461194	-	RAMPAGE_only	21	21	37	1.798344	4.204582	chr2	69461040	69461386	DNA|TcMar-Tigger|Tigger3a	+	chr2	69457996	69509280	AAK1|ENST00000606389.5	-	69457996,69495984,69505568,69507420,69509230	69466551,69496080,69505673,69507578,69509280	0.918919
heart_left_ventricle_female_adult_53_years	chr1	39310273	39310279	39310278	+	RAMPAGE_only	6	7	15	0.729058	3.456565	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	1.000000
heart_left_ventricle_female_adult_53_years	chr19	51350348	51350380	51350379	-	RAMPAGE_only	7	8	28	1.360909	3.700440	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.928571
heart_left_ventricle_female_adult_53_years	chr13	94119425	94119434	94119433	+	RAMPAGE_only	12	12	22	1.069285	4.061482	chr13	94119131	94119537	LINE|L2|L2a	-	chr13	94286347	94403217	GPC6|ENST00000617456.1	+	94286347,94305979,94382413,94398465,94403014	94286479,94306123,94382550,94398641,94403217	0.863636
heart_left_ventricle_female_adult_53_years	chr3	47637077	47637078	47637077	-	RAMPAGE_only	20	22	22	1.069285	3.446439	chr3	47637061	47637193	SINE|Alu|FLAM_A	-	chr3	46857871	46866465	STRG.5016.3	-	46857871,46858230,46858383,46859474,46860675,46860959,46863261,46866389	46858101,46858272,46858461,46859648,46860825,46860987,46863396,46866465	0.909091
heart_left_ventricle_female_adult_53_years	chr1	201360453	201360454	201360453	-	High_confidence	36	36	40	1.944155	3.701325	chr1	201360361	201360542	SINE|MIR|MIR	-	chr1	201359033	201361357	STRG.2180.23	-	201359033,201359622,201361213	201359255,201359663,201361357	0.500000
heart_left_ventricle_female_adult_53_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	19	21	21	1.020682	4.106603	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888512	77933384	NEXN|ENST00000401035.7	+	77888512,77916054,77917959,77918124,77925187,77926413,77926715,77929315,77933281	77888759,77916133,77918038,77918273,77925229,77926611,77926892,77929504,77933384	0.571429
heart_left_ventricle_female_adult_53_years	chr8	18076302	18076305	18076304	-	High_confidence	113	130	184	8.943115	5.769843	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18066766	18076305	ASAH1|ENST00000637872.1	-	18066766,18069791,18071299,18075540,18076176	18067298,18069878,18071390,18075587,18076305	0.853261
heart_left_ventricle_female_adult_53_years	chr9	69307106	69307110	69307106	-	High_confidence	8	8	15	0.729058	2.985228	chr9	69306938	69307567	LTR|ERV1|MER41B	-	chr9	69296684	69307135	BANCR|ENST00000624238.2	-	69296684,69304935,69306147,69306853	69296867,69305077,69306290,69307135	0.866667
heart_left_ventricle_female_adult_53_years	chr4	152850633	152850648	152850647	+	High_confidence	4	4	9	0.437435	2.750000	chr4	152850580	152850736	DNA|hAT-Charlie|MER5A1	+	chr4	152850647	152881111	ARFIP1|ENST00000513361.1	+	152850647,152863605,152870752,152872451,152880962	152850727,152863714,152870848,152872564,152881111	0.555556
heart_left_ventricle_female_adult_53_years	chr7	107580245	107580267	107580264	+	High_confidence	1109	1112	4926	239.422737	6.821156	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.966707
heart_left_ventricle_female_adult_53_years	chr5	151676392	151676393	151676392	-	RAMPAGE_only	7	7	7	0.340227	2.521641	chr5	151676278	151676631	DNA|hAT-Charlie|MER113	+	chr5	151667473	151671829	SPARC|ENST00000524277.1	-	151667473,151669663,151671572	151667600,151669784,151671829	1.000000
heart_left_ventricle_female_adult_53_years	chr11	47783803	47783822	47783803	-	RAMPAGE_only	6	6	11	0.534643	2.845351	chr11	47783727	47783993	SINE|Alu|AluSx	-	chr11	47778236	47848313	NUP160|ENST00000530326.5	-	47778236,47784921,47786452,47788181,47788500,47791929,47792785,47797778,47797977,47798167,47798367,47801810,47803437,47804548,47806152,47807069,47808395,47812063,47812301,47812881,47813315,47815478,47815945,47818055,47819373,47821723,47822086,47835650,47836886,47837544,47839842,47840377,47847847,47848218	47779164,47785063,47786554,47788305,47788611,47791990,47792946,47797884,47798074,47798262,47798463,47801930,47803536,47804618,47806312,47807140,47808529,47812224,47812429,47813047,47813415,47815649,47816029,47818124,47819458,47821821,47822164,47835809,47837001,47837623,47840065,47840588,47847959,47848313	1.000000
heart_left_ventricle_female_adult_53_years	chr1	6002977	6003035	6003022	+	RAMPAGE_only	20	20	123	5.978278	5.911638	chr1	6003009	6003075	SINE|MIR|MIRc	-	chr1	5992700	6098574	KCNAB2|ENST00000378092.5	+	5992700,6040516,6072754,6073732,6082194,6085203,6087466,6089007,6090388,6094399,6095322,6095529,6096635,6097268,6098484	5992788,6040645,6072798,6073770,6082274,6085248,6087511,6089051,6090475,6094485,6095443,6095624,6096756,6097357,6098574	0.715447
heart_left_ventricle_female_adult_53_years	chr2	217909725	217909737	217909736	-	RAMPAGE_only	15	17	28	1.360909	3.507380	chr2	217909603	217909688	DNA|hAT-Charlie|MER5A	-	chr2	217848883	217905461	TNS1|ENST00000413554.5	-	217848883,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217905295	217849087,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217905461	0.928571
heart_left_ventricle_female_adult_53_years	chr9	121286546	121286549	121286548	+	High_confidence	11	19	27	1.312305	4.392747	chr9	121286415	121286709	LINE|L2|L2b	+	chr9	121286579	121332842	GSN|NM_001258030.1	+	121286579,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286761,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.962963
heart_left_ventricle_female_adult_53_years	chrX	16712869	16712912	16712889	-	High_confidence	5	5	13	0.631851	3.251629	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.923077
heart_left_ventricle_female_adult_53_years	chr15	85349296	85349335	85349296	+	High_confidence	9	10	31	1.506720	4.348394	chr15	85349240	85349519	SINE|Alu|AluJr4	-	chr15	85349312	85369167	STRG.20762.2	+	85349312,85352026,85361266,85365334,85365898,85369051	85349385,85352123,85361420,85365800,85365954,85369167	0.645161
heart_left_ventricle_female_adult_53_years	chr22	18149844	18149869	18149844	+	High_confidence	4	4	16	0.777662	3.452820	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
heart_left_ventricle_female_adult_53_years	chr1	36204472	36204489	36204488	+	RAMPAGE_only	6	6	11	0.534643	2.846439	chr1	36204301	36204536	DNA|hAT-Charlie|MER20	-	chr1	36224411	36305357	THRAP3|NM_001321473.1	+	36224411,36259381,36282532,36286367,36289059,36291373,36292597,36293850,36296582,36300885,36301555,36303795	36224505,36259484,36282700,36287270,36289764,36291546,36292709,36293935,36296770,36301084,36301696,36305357	0.636364
heart_left_ventricle_female_adult_53_years	chr3	188397631	188397662	188397661	+	RAMPAGE_only	3	3	11	0.534643	3.121928	chr3	188397610	188397913	SINE|Alu|AluSz	-	chr3	188239863	188406291	LPP|ENST00000457242.1	+	188239863,188406111	188240162,188406291	0.545455
heart_left_ventricle_female_adult_53_years	chr12	45292684	45292709	45292685	+	High_confidence	50	77	173	8.408472	6.102884	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.976879
heart_left_ventricle_female_adult_53_years	chr12	49013477	49013482	49013477	-	RAMPAGE_only	9	12	19	0.923474	3.350209	chr12	49013243	49013543	SINE|Alu|AluJb	-	chr12	49004571	49018415	PRKAG1|ENST00000552463.5	-	49004571,49004963,49005119,49005305,49005461,49005742,49013061,49016606,49018333	49004633,49005018,49005165,49005364,49005543,49005852,49013110,49016839,49018415	0.526316
heart_left_ventricle_female_adult_53_years	chr10	113662682	113662715	113662690	-	RAMPAGE_only	241	242	463	22.503599	6.399292	chr10	113662586	113662659	LINE|L1|L1MA4A	-	chr10	113588715	113664046	NRAP|ENST00000369360.7	-	113588715,113589665,113590577,113592193,113595622,113597085,113597968,113604608,113605761,113606177,113608413,113610458,113612233,113614182,113614838,113615711,113617454,113620603,113621868,113623528,113624825,113626046,113628916,113629587,113631508,113631852,113633083,113634111,113640226,113641364,113645824,113646922,113650036,113650437,113651802,113652934,113654020,113657469,113662678,113663351,113663810	113589079,113589797,113590889,113592301,113595727,113597184,113598073,113604920,113605869,113606282,113608512,113610563,113612431,113614296,113614946,113615816,113617553,113620708,113622180,113623636,113624930,113626145,113629021,113629785,113631630,113631964,113633188,113634210,113640331,113641472,113645941,113647027,113650141,113650545,113651907,113653039,113654125,113657574,113662766,113663446,113664046	0.976242
heart_left_ventricle_female_adult_53_years	chr11	17282904	17282915	17282904	+	RAMPAGE_only	5	5	10	0.486039	2.725481	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.700000
heart_left_ventricle_female_adult_53_years	chr16	8842153	8842215	8842153	+	High_confidence	7	7	28	1.360909	4.351823	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.892857
heart_left_ventricle_female_adult_53_years	chr19	58306173	58306174	58306173	+	High_confidence	5	5	8	0.388831	2.750000	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305374	58314781	ERVK3-1|ENST00000610038.5	+	58305374,58306087,58312027,58314747	58305445,58306216,58312462,58314781	0.625000
heart_left_ventricle_female_adult_53_years	chr16	253927	253928	253927	+	High_confidence	8	8	8	0.388831	2.750000	chr16	253772	253931	SINE|MIR|MIR	-	chr16	254627	260788	FAM234A|ENST00000421000.1	+	254627,259482,259968,260412	254681,259599,260160,260788	1.000000
heart_left_ventricle_female_adult_53_years	chr2	55267603	55267623	55267622	-	High_confidence	9	9	24	1.166493	4.418296	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.750000
heart_left_ventricle_female_adult_53_years	chr1	226542738	226542739	226542738	-	High_confidence	24	24	26	1.263701	3.970176	chr1	226542461	226543018	LTR|ERVL|LTR66	-	chr1	226537403	226542729	STRG.2423.1	-	226537403,226542638	226538699,226542729	0.653846
heart_left_ventricle_female_adult_53_years	chr8	39082981	39083067	39083066	+	RAMPAGE_only	14	20	76	3.693895	5.113969	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.684211
heart_left_ventricle_female_adult_53_years	chr2	241641020	241641044	241641043	+	RAMPAGE_only	3	3	10	0.486039	2.947703	chr2	241640468	241641268	LINE|L2|L2a	-	chr2	241637728	241659187	ATG4B|ENST00000430617.6	+	241637728,241651009,241651263,241653306,241653511,241654545,241655270,241659107	241637760,241651111,241651335,241653369,241653610,241654647,241655343,241659187	0.900000
heart_left_ventricle_female_adult_53_years	chr10	29530607	29530610	29530607	-	RAMPAGE_only	3	5	10	0.486039	2.503258	chr10	29530411	29530568	SINE|Alu|FLAM_C	-	chr10	29457347	29634972	SVIL|NM_021738.2	-	29457347,29458433,29462276,29463491,29465594,29467741,29470275,29471137,29473837,29480536,29481583,29484655,29486084,29486409,29487162,29488600,29490846,29493213,29494913,29495091,29499115,29512734,29522409,29523450,29524471,29526960,29529704,29530606,29531253,29532001,29532528,29535988,29550596,29554782,29555050,29563200,29569254,29634419	29458333,29458589,29462401,29463635,29465750,29467875,29470483,29471243,29473989,29480813,29481728,29484831,29486230,29486557,29487299,29488756,29491019,29493391,29495000,29495181,29499263,29512861,29522635,29524027,29524715,29527056,29529844,29530668,29531288,29532172,29533458,29536069,29551263,29554934,29555108,29563292,29569312,29634972	0.900000
heart_left_ventricle_female_adult_53_years	chr15	40894518	40894521	40894518	+	High_confidence	2	2	6	0.291623	2.584963	chr15	40894565	40894630	LINE|CR1|X6A_LINE	+	chr15	40894466	40902861	VPS18|ENST00000558474.1	+	40894466,40895937,40898906,40902615	40894859,40896079,40898998,40902861	0.666667
heart_left_ventricle_female_adult_53_years	chr12	104030726	104030727	104030726	+	High_confidence	28	28	28	1.360909	4.423252	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.964286
heart_left_ventricle_female_adult_53_years	chr17	47067498	47067518	47067498	-	High_confidence	200	208	746	36.258498	5.825789	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	46998797	47067488	STRG.22861.1	-	46998797,47007839,47021581,47033277,47054117,47056459,47067413	46998817,47007884,47021721,47033381,47054213,47056753,47067488	0.949062
heart_left_ventricle_female_adult_53_years	chr22	41256710	41256755	41256710	-	RAMPAGE_only	2	2	16	0.777662	3.640224	chr22	41256522	41256664	SINE|MIR|MIRb	-	chr22	41245614	41282514	RANGAP1|ENST00000455915.6	-	41245614,41249329,41249728,41251006,41252871,41254307,41256020,41256190,41256710,41257947,41261445,41264663,41268096,41274599,41280932	41246672,41249451,41249817,41251109,41252991,41254494,41256105,41256290,41256824,41258106,41261580,41264843,41268156,41274727,41282514	0.937500
heart_left_ventricle_female_adult_53_years	chr15	43133119	43133146	43133119	+	High_confidence	2	2	8	0.388831	2.750000	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133143	43148788	TMEM62|ENST00000569535.5	+	43133143,43135511,43146492,43148754	43133402,43135649,43146634,43148788	0.875000
heart_left_ventricle_female_adult_53_years	chr17	68520135	68520136	68520135	+	RAMPAGE_only	10	11	13	0.631851	3.546594	chr17	68519963	68520291	LTR|ERVL-MaLR|MLT1I	-	chr17	68515399	68551319	PRKAR1A|ENST00000588188.6	+	68515399,68522755,68523724,68524015,68524911,68525753,68527839,68528869,68529919,68551083	68515576,68522926,68523816,68524077,68524958,68525912,68527900,68528991,68530001,68551319	1.000000
heart_left_ventricle_female_adult_53_years	chr1	20028387	20028426	20028407	+	High_confidence	8	12	33	1.603928	4.680758	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028429	20091158	PLA2G5|ENST00000465698.5	+	20028429,20059631,20068872,20084820,20086082,20088824,20089788,20090567	20028709,20059692,20069032,20084870,20086227,20088943,20089895,20091158	0.848485
heart_left_ventricle_female_adult_53_years	chr1	54243234	54243250	54243234	-	RAMPAGE_only	4	4	14	0.680454	3.521641	chr1	54243091	54243229	SINE|MIR|MIR3	-	chr1	54226516	54228834	SSBP3|ENST00000528930.5	-	54226516,54228254,54228448,54228747	54227160,54228356,54228477,54228834	0.714286
heart_left_ventricle_female_adult_53_years	chr17	77127964	77127966	77127964	+	High_confidence	4	6	9	0.437435	2.750000	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.666667
heart_left_ventricle_female_adult_53_years	chr8	141396232	141396233	141396232	+	RAMPAGE_only	9	9	9	0.437435	3.169925	chr8	141396213	141396373	SINE|MIR|MIRb	-	chr8	141392020	141432454	STRG.13205.2	+	141392020,141421387,141425047,141426454,141426938,141427749,141430926	141392084,141422345,141425140,141426628,141427069,141427824,141432454	0.666667
heart_left_ventricle_female_adult_53_years	chr22	32111104	32111294	32111293	+	RAMPAGE_only	48	48	206	10.012400	5.511832	chr22	32111132	32111510	LTR|ERVL-MaLR|MLT1B	-	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	1.000000
heart_left_ventricle_female_adult_53_years	chr10	65570509	65570520	65570509	+	High_confidence	3	3	9	0.437435	2.500000	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570501	65585801	LINC01515|ENST00000599409.5	+	65570501,65571424,65572934,65585484,65585664	65570759,65571579,65573056,65585567,65585801	0.555556
heart_left_ventricle_female_adult_53_years	chr3	38550935	38551193	38550986	-	RAMPAGE_only	21	21	156	7.582206	5.713601	chr3	38550885	38550977	LINE|RTE-BovB|MamRTE1	-	chr3	38550320	38633316	SCN5A|ENST00000449557.6	-	38550320,38554278,38555655,38556440,38557230,38560146,38562414,38566408,38575296,38576660,38580930,38585690,38587399,38597728,38598917,38603711,38604728,38605950,38606668,38608150,38609733,38613742,38620842,38622399,38630310,38633034	38551558,38554549,38555760,38556578,38557284,38560428,38562537,38566582,38575451,38576781,38581371,38586041,38587573,38597967,38599050,38604083,38604908,38606148,38606810,38608214,38609964,38613834,38620971,38622489,38630429,38633316	0.980769
heart_left_ventricle_female_adult_53_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	7	7	7	0.340227	2.521641	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
heart_male_adult_34_years	chr15	36594721	36594742	36594721	+	High_confidence	66	66	282	10.400508	5.775631	chr15	36594706	36594759	SINE|tRNA|LFSINE_Vert	+	chr15	36594868	36810260	C15orf41|NM_032499.5	+	36594868,36640604,36644277,36645222,36654097,36657832,36691684,36692125,36697322,36709222,36709855,36808323	36594918,36640659,36644323,36645287,36654158,36657905,36691764,36692175,36697390,36709288,36709961,36810260	0.939716
heart_male_adult_34_years	chr2	109173553	109173560	109173553	+	RAMPAGE_only	6	6	11	0.405694	2.913977	chr2	109173517	109173626	DNA|hAT-Charlie|MER58B	+	chr2	109129540	109504636	SH3RF3|NM_001099289.2	+	109129540,109347673,109371585,109398589,109419538,109432500,109436892,109449169,109490604,109501502	109130113,109347949,109371681,109398943,109419642,109432671,109437146,109449489,109490936,109504636	0.727273
heart_male_adult_34_years	chr8	18083285	18083305	18083297	-	High_confidence	4	4	16	0.590100	3.640224	chr8	18083239	18083389	SINE|MIR|MIR3	+	chr8	18056458	18083408	ASAH1|ENST00000636691.1	-	18056458,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18067219,18069791,18071299,18075540,18083121	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18064531,18067298,18069878,18071390,18075587,18083408	0.500000
heart_male_adult_34_years	chr2	170751705	170751707	170751706	+	High_confidence	24	46	52	1.917824	4.878563	chr2	170750015	170751707	LINE|L1|L1MEc	+	chr2	170751804	170752788	EIF2S2P4|ENST00000461070.1	+	170751804	170752788	0.942308
heart_male_adult_34_years	chr4	62934164	62934171	62934170	-	High_confidence	14	14	38	1.401487	4.553652	chr4	62934103	62934545	LINE|L2|L2a	+	chr4	62929180	62934165	STRG.29774.4	-	62929180	62934165	0.657895
heart_male_adult_34_years	chr2	71417057	71417058	71417057	+	RAMPAGE_only	7	7	9	0.331931	2.725481	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.888889
heart_male_adult_34_years	chr6	130978732	130978739	130978738	-	High_confidence	16	16	38	1.401487	4.152937	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.921053
heart_male_adult_34_years	chr10	30999446	30999520	30999446	-	RAMPAGE_only	6	6	40	1.475249	4.984770	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844780	31031925	STRG.64187.8	-	30844780,30848530,30875330,30876997,30908932,30941574,30984368	30845573,30850367,30875509,30877065,30909015,30941651,31031925	0.600000
heart_male_adult_34_years	chr6	4346863	4346896	4346863	-	High_confidence	15	19	34	1.253962	4.197326	chr6	4346798	4346936	SINE|MIR|MIRb	-	chr6	4345742	4347037	AL159166.1|ENST00000437430.2	-	4345742,4346632,4347009	4345806,4346869,4347037	0.558824
heart_male_adult_34_years	chr1	223026619	223026655	223026627	+	High_confidence	376	377	1019	37.581979	6.968471	chr1	223026591	223026741	LTR|ERV1|HERVH-int	-	chr1	223026614	223115205	STRG.8972.1	+	223026614,223049314,223056551,223060304,223063112,223110523	223028018,223056417,223059565,223060508,223063505,223115205	0.995093
heart_male_adult_34_years	chr14	37086009	37086021	37086009	-	RAMPAGE_only	5	6	12	0.442575	3.418296	chr14	37085823	37086120	SINE|Alu|AluY	+	chr14	36678430	37172423	SLC25A21|ENST00000555449.5	-	36678430,36680661,36683827,36684743,36711317,36725569,36729506,36734506,36813917,36874955,37172280	36678484,36680719,36683880,36684925,36711482,36725677,36729566,36734573,36814001,36875004,37172423	0.500000
heart_male_adult_34_years	chr13	114284286	114284317	114284316	+	RAMPAGE_only	3	4	11	0.405694	2.663533	chr13	114284081	114284352	SINE|Alu|AluSg	+	chr13	114285974	114291718	UPF3A|ENST00000481131.5	+	114285974,114286518,114291488,114291633	114286400,114286629,114291544,114291718	1.000000
heart_male_adult_34_years	chr14	81170392	81170420	81170392	-	High_confidence	20	22	133	4.905204	5.733744	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81160276	81170399	STRG.84706.4	-	81160276,81170108	81165381,81170399	0.924812
heart_male_adult_34_years	chr9	92406725	92406729	92406727	-	RAMPAGE_only	3	7	9	0.331931	2.947703	chr9	92406482	92406846	LTR|ERVL-MaLR|MLT1F2	-	chr9	92383270	92404699	OGN|NM_033014.3	-	92383270,92386200,92389853,92393085,92401091,92403233,92404495	92385790,92386296,92390056,92393244,92401185,92403764,92404699	0.777778
heart_male_adult_34_years	chr3	115110180	115110207	115110206	-	RAMPAGE_only	167	176	404	14.900019	6.505982	chr3	115109927	115110224	SINE|Alu|AluSx	+	chr3	114314499	115071414	ZBTB20|NM_001164343.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114713975,114743711,114874038,114900303,114974365,115071218	114339426,114351878,114380404,114389105,114500391,114693575,114714015,114743779,114874108,114900342,114974416,115071414	0.772277
heart_male_adult_34_years	chr15	49434490	49434506	49434505	+	High_confidence	17	19	41	1.512131	4.179776	chr15	49434294	49434519	LINE|L2|L2c	-	chr15	49434395	49484520	FGF7|ENST00000560704.1	+	49434395,49483150,49484309	49434653,49483254,49484520	0.902439
heart_male_adult_34_years	chr3	129191971	129191988	129191987	+	RAMPAGE_only	8	9	14	0.516337	3.546594	chr3	129191880	129192047	LINE|L2|L2a	+	chr3	129195319	129203351	STRG.24574.3	+	129195319,129201589	129201519,129203351	0.500000
heart_male_adult_34_years	chr2	182030747	182030794	182030747	+	High_confidence	9	9	22	0.811387	4.165894	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.727273
heart_male_adult_34_years	chr4	119128277	119128300	119128293	-	High_confidence	299	299	707	26.075034	7.117355	chr4	119128208	119128490	LINE|L2|L2	+	chr4	119106425	119128339	STRG.31915.3	-	119106425,119122206	119120101,119128339	0.882603
heart_male_adult_34_years	chr9	62376604	62376621	62376619	+	High_confidence	2	4	8	0.295050	2.521641	chr9	62376600	62376639	SINE|MIR|MIRb	+	chr9	62376516	62434255	STRG.60069.1	+	62376516,62386773,62432875,62434066	62376813,62386883,62432979,62434255	0.750000
heart_male_adult_34_years	chr3	131804587	131804630	131804603	-	High_confidence	96	97	341	12.576501	6.530067	chr3	131804531	131804997	LTR|ERVL-MaLR|MLT1H	+	chr3	131534736	131804736	STRG.24713.1	-	131534736,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131804557	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131804736	0.560117
heart_male_adult_34_years	chr5	34244804	34244816	34244804	-	High_confidence	4	4	11	0.405694	2.845351	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.727273
heart_male_adult_34_years	chr14	44912624	44912638	44912628	-	High_confidence	7	8	22	0.811387	3.299896	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44831505	44912638	STRG.82882.1	-	44831505,44899229,44911756,44912452	44831690,44899313,44911860,44912638	0.818182
heart_male_adult_34_years	chr5	137858482	137858483	137858482	-	RAMPAGE_only	15	15	22	0.811387	4.186704	chr5	137858418	137858761	DNA|TcMar-Tigger|MER44A	+	chr5	137637293	137889317	STRG.39110.2	-	137637293,137638952,137639859,137658130,137661914,137677544,137692284,137698286,137709749,137720464,137735632,137770002,137779916,137795405,137798235,137823267,137858427,137859055,137880307,137888159,137889146	137637395,137639150,137639977,137658280,137662031,137677654,137692447,137698408,137709856,137720584,137735829,137771474,137792128,137797804,137814597,137846946,137858481,137859263,137885764,137888288,137889317	0.681818
heart_male_adult_34_years	chr16	72073244	72073245	72073244	+	High_confidence	10	10	10	0.368812	2.921928	chr16	72072861	72073376	LTR|ERV1|LTR10B	+	chr16	72073248	72077246	STRG.91830.18	+	72073248,72075144,72076302	72074385,72075219,72077246	1.000000
heart_male_adult_34_years	chr17	29667400	29667423	29667417	-	RAMPAGE_only	4	4	13	0.479456	3.251629	chr17	29667384	29667678	DNA|hAT-Charlie|MER1B	+	chr17	29625937	29761390	STRG.93815.4	-	29625937,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677741,29684684,29695523,29703062,29761390	0.923077
heart_male_adult_34_years	chr3	16899145	16899151	16899145	+	RAMPAGE_only	2	2	6	0.221287	2.584963	chr3	16899144	16899233	LINE|RTE-BovB|MamRTE1	+	chr3	16884958	17090594	STRG.20538.1	+	16884958,16895140,17009673,17014707,17042873,17067955,17089732	16895072,16899684,17012160,17014911,17042949,17068065,17090594	1.000000
heart_male_adult_34_years	chr10	122029048	122029064	122029057	+	RAMPAGE_only	49	52	112	4.130698	5.060698	chr10	122029026	122029558	LINE|L1|L1MD	-	chr10	122021992	122083007	TACC2|ENST00000491540.1	+	122021992,122033093,122050437,122082655	122022014,122033153,122050550,122083007	0.910714
heart_male_adult_34_years	chr4	184343960	184343968	184343960	-	High_confidence	4	4	8	0.295050	2.807355	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184343381	184343781	STRG.34261.1	-	184343381	184343781	0.625000
heart_male_adult_34_years	chr13	37934500	37934610	37934549	+	High_confidence	16	18	87	3.208668	5.421571	chr13	37934381	37935273	LTR|ERV1|LTR1D	-	chr13	37934564	38048169	LINC02334|ENST00000617568.1	+	37934564,37997811,38013403,38029648,38043950	37935037,37997937,38013501,38029691,38048169	0.965517
heart_male_adult_34_years	chr3	176025988	176026007	176025988	-	High_confidence	7	7	22	0.811387	3.721928	chr3	176025808	176025992	LTR|ERVL-MaLR|MLT1B	-	chr3	176022344	176025989	STRG.26449.2	-	176022344	176025989	0.818182
heart_male_adult_34_years	chr6	163210513	163210549	163210548	-	RAMPAGE_only	4	4	15	0.553219	3.906891	chr6	163210541	163210638	SINE|MIR|MIRb	+	chr6	163189417	163191802	PACRG-AS3|ENST00000612841.1	-	163189417,163191601	163190982,163191802	0.533333
heart_male_adult_34_years	chr2	198113489	198113490	198113489	+	RAMPAGE_only	14	14	14	0.516337	3.093069	chr2	198113329	198113594	LINE|L2|L2b	-	chr2	198083748	198149884	PLCL1|ENST00000437704.3	+	198083748,198088857,198101284,198103826,198146779	198086232,198089061,198101360,198103936,198149884	1.000000
heart_male_adult_34_years	chrX	153707257	153707258	153707257	-	RAMPAGE_only	23	23	28	1.032675	4.182006	chrX	153707104	153707333	LINE|L2|L2c	+	chrX	153700502	153705456	BCAP31|ENST00000646514.1	-	153700502,153702006,153702934,153703958,153704820,153705354	153700975,153702107,153703058,153704094,153705101,153705456	0.964286
heart_male_adult_34_years	chr2	38082992	38083072	38083053	+	High_confidence	12	14	68	2.507924	5.305680	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.911765
heart_male_adult_34_years	chr11	123061256	123061323	123061256	-	High_confidence	5	5	49	1.807181	4.262380	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.918367
heart_male_adult_34_years	chr12	46243250	46243279	46243278	-	RAMPAGE_only	4	4	11	0.405694	2.646439	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.909091
heart_male_adult_34_years	chr3	111911612	111911619	111911612	+	High_confidence	6	7	10	0.368812	2.646439	chr3	111911655	111911757	DNA|hAT-Ac|OldhAT1	+	chr3	111911609	111976465	PHLDB2|ENST00000495180.1	+	111911609,111913318,111919071,111920281,111932268,111939474,111940534,111945267,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111911724,111913702,111919215,111920419,111932397,111939630,111940645,111945357,111954029,111962312,111966703,111967824,111969909,111973817,111976465	0.900000
heart_male_adult_34_years	chr4	119127371	119127388	119127376	-	High_confidence	7	9	20	0.737625	3.884184	chr4	119127197	119127483	SINE|Alu|AluSp	-	chr4	119106425	119128339	STRG.31915.3	-	119106425,119122206	119120101,119128339	1.000000
heart_male_adult_34_years	chr8	38838165	38838181	38838180	+	RAMPAGE_only	4	4	9	0.331931	2.750000	chr8	38837795	38838224	LTR?|LTR?|MamRep605	+	chr8	38839283	38853028	TACC1|ENST00000519093.5	+	38839283,38842286,38843288,38846698,38847954	38840267,38842447,38843395,38846819,38853028	0.777778
heart_male_adult_34_years	chr12	10710653	10710654	10710653	-	High_confidence	12	12	12	0.442575	2.855389	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.833333
heart_male_adult_34_years	chr13	24968471	24968477	24968471	-	High_confidence	7	7	13	0.479456	3.251629	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24933005	24968453	TPTE2P1|ENST00000649209.1	-	24933005,24937576,24940506,24941986,24942931,24951396,24951594,24961748,24967391,24968205	24934663,24937770,24940785,24942108,24943021,24951488,24951770,24961849,24967453,24968453	0.615385
heart_male_adult_34_years	chr4	119129117	119129145	119129117	+	RAMPAGE_only	4	4	10	0.368812	3.321928	chr4	119129015	119129375	LTR|ERVL-MaLR|THE1B	+	chr4	119135783	119187789	MYOZ2|ENST00000307128.5	+	119135783,119136511,119150871,119158021,119164210,119185965	119135982,119136601,119151041,119158151,119164394,119187789	0.500000
heart_male_adult_34_years	chr8	18082564	18082584	18082577	-	High_confidence	3	3	11	0.405694	3.121928	chr8	18082289	18082821	LTR|ERV1|MER90a	+	chr8	18062354	18082603	ASAH1|ENST00000636823.1	-	18062354,18063184,18064456,18067219,18069791,18071299,18075540,18082526	18062423,18063230,18064531,18067298,18069878,18071390,18075587,18082603	0.545455
heart_male_adult_34_years	chrX	46907902	46907912	46907902	-	RAMPAGE_only	5	5	11	0.405694	2.921928	chrX	46907356	46907892	LTR|ERVL|MER68	-	chrX	46887416	46899704	LINC01545|NR_046101.1	-	46887416,46890292,46894523,46899603	46887692,46890379,46894581,46899704	0.818182
heart_male_adult_34_years	chr17	50165404	50165424	50165404	+	High_confidence	4	4	11	0.405694	3.321928	chr17	50165337	50165958	LINE|L2|L2b	-	chr17	50165984	50175932	SGCA|NM_001135697.2	+	50165984,50167367,50167581,50167946,50168373,50170639,50175256,50175711	50166077,50167487,50167736,50168019,50168572,50170666,50175449,50175932	0.636364
heart_male_adult_34_years	chr7	10157081	10157103	10157083	-	High_confidence	11	20	33	1.217081	3.215018	chr7	10156826	10157309	LTR|ERV1|LTR39	+	chr7	10151195	10157122	STRG.48401.1	-	10151195	10157122	0.909091
heart_male_adult_34_years	chr12	55659665	55659685	55659665	+	High_confidence	2	2	6	0.221287	2.584963	chr12	55659399	55659689	LINE|RTE-X|L4_A_Mam	-	chr12	55659675	55660125	STRG.75764.1	+	55659675	55660125	0.500000
heart_male_adult_34_years	chr3	73623562	73623586	73623562	+	High_confidence	9	10	27	0.995793	4.134336	chr3	73623488	73623574	SINE|MIR|MIRc	-	chr3	73623567	73627899	PDZRN3-AS1|NR_046681.1	+	73623567,73625411	73623965,73627899	1.000000
heart_male_adult_34_years	chrX	154735798	154735799	154735798	-	RAMPAGE_only	10	10	12	0.442575	3.418296	chrX	154735477	154735945	LINE|L2|L2	+	chrX	154675252	154751057	GAB3|ENST00000369575.7	-	154675252,154680131,154695916,154697131,154699293,154700003,154712228,154713206,154716025,154750953	154678294,154680248,154696019,154697213,154699513,154700059,154712701,154713423,154716329,154751057	0.583333
heart_male_adult_34_years	chr12	83472469	83472484	83472483	-	High_confidence	8	8	19	0.700743	3.721612	chr12	83472101	83472741	LTR|ERVL-MaLR|MLT1E2	+	chr12	83457678	83472510	STRG.76803.1	-	83457678,83472259	83458952,83472510	1.000000
heart_male_adult_34_years	chr9	120534028	120534050	120534043	-	RAMPAGE_only	66	74	307	11.322539	6.408740	chr9	120533823	120534313	LINE|L2|L2c	+	chr9	120518599	120532555	CDK5RAP2|ENST00000482047.1	-	120518599,120524985,120527805,120528743,120529977,120532466	120518645,120525078,120527925,120528797,120530140,120532555	0.921824
heart_male_adult_34_years	chr12	9407506	9407507	9407506	-	RAMPAGE_only	9	10	13	0.479456	3.251629	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9398354	9414851	AC141557.1|ENST00000540982.1	-	9398354,9400235,9402426,9414802	9398484,9400326,9402556,9414851	0.538462
heart_male_adult_34_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	8	8	8	0.295050	2.750000	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
heart_male_adult_34_years	chr13	102880349	102880377	102880349	+	High_confidence	34	34	100	3.688124	5.826489	chr13	102880267	102880451	SINE|MIR|MIRc	+	chr13	102880098	102896033	METTL21EP|NR_026965.1	+	102880098,102881087,102891335,102895280	102880212,102881167,102892700,102896033	0.890000
heart_male_adult_34_years	chr17	59619894	59619923	59619894	+	High_confidence	930	999	2265	83.535999	5.900412	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.979691
heart_male_adult_34_years	chrX	15695281	15695345	15695281	+	RAMPAGE_only	4	4	19	0.700743	3.892407	chrX	15694740	15695288	LTR|ERVL|MER74A	-	chrX	15681052	15703192	CA5BP1|ENST00000435806.2	+	15681052,15688660,15692962,15695670,15697604,15702781	15681187,15688858,15693058,15695733,15697765,15703192	0.526316
heart_male_adult_34_years	chr1	6208681	6208682	6208681	-	High_confidence	12	12	12	0.442575	2.855389	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
heart_male_adult_34_years	chr1	116390289	116390299	116390289	+	RAMPAGE_only	13	13	22	0.811387	3.236857	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.954545
heart_male_adult_34_years	chr12	55626261	55626268	55626267	-	High_confidence	247	249	441	16.264625	5.646085	chr12	55626113	55626696	LTR|ERVL-MaLR|MLT1F2	-	chr12	55434813	55626323	STRG.75735.2	-	55434813,55476548,55493090,55626189	55435131,55476601,55493158,55626323	0.841270
heart_male_adult_34_years	chr8	116730249	116730291	116730249	-	RAMPAGE_only	59	64	129	4.757679	5.674983	chr8	116730180	116730513	DNA|hAT-Charlie|MER1B	+	chr8	116648805	116755784	EIF3H|ENST00000518949.5	-	116648805,116655855,116657214,116658812,116697052,116755665	116648926,116656005,116657314,116658980,116697237,116755784	0.744186
heart_male_adult_34_years	chr11	47783793	47783804	47783803	-	RAMPAGE_only	14	15	32	1.180200	4.415061	chr11	47783727	47783993	SINE|Alu|AluSx	-	chr11	47778236	47848313	NUP160|ENST00000530326.5	-	47778236,47784921,47786452,47788181,47788500,47791929,47792785,47797778,47797977,47798167,47798367,47801810,47803437,47804548,47806152,47807069,47808395,47812063,47812301,47812881,47813315,47815478,47815945,47818055,47819373,47821723,47822086,47835650,47836886,47837544,47839842,47840377,47847847,47848218	47779164,47785063,47786554,47788305,47788611,47791990,47792946,47797884,47798074,47798262,47798463,47801930,47803536,47804618,47806312,47807140,47808529,47812224,47812429,47813047,47813415,47815649,47816029,47818124,47819458,47821821,47822164,47835809,47837001,47837623,47840065,47840588,47847959,47848313	0.687500
heart_male_adult_34_years	chr14	71002030	71002044	71002043	+	RAMPAGE_only	15	20	32	1.180200	4.351410	chr14	71001845	71002099	LTR|ERVL-MaLR|MLT1J	-	chr14	71013030	71110153	PCNX1|ENST00000554691.5	+	71013030,71019008,71023199,71026116,71026771,71028699,71033428,71033930,71036064,71045132,71046963,71047806,71050651,71051882,71055503,71073544,71076188,71088329,71089191,71101989,71103394,71105234,71108603,71109451,71109794	71013202,71019162,71023232,71026288,71026882,71028791,71033538,71034036,71036157,71045283,71047105,71047984,71050760,71052012,71055562,71073798,71076419,71088430,71089342,71102220,71103669,71105440,71109046,71109592,71110153	0.593750
heart_male_adult_34_years	chr1	51426285	51426288	51426285	-	RAMPAGE_only	2	2	6	0.221287	2.584963	chr1	51426230	51426417	LTR|ERVL-MaLR|MLT1K	+	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.833333
heart_male_adult_34_years	chr1	20028407	20028516	20028515	+	High_confidence	746	824	1282	47.281744	7.644155	chr1	20028464	20028814	LTR|ERV1|LTR46-int	-	chr1	20028525	20086227	STRG.789.14	+	20028525,20068872,20084820,20086082	20059692,20070465,20084870,20086227	0.857254
heart_male_adult_34_years	chr16	87381453	87381470	87381459	-	RAMPAGE_only	9	9	38	1.401487	4.704511	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87326986	87383748	STRG.92335.1	-	87326986,87333885,87335303,87336154,87342876,87343597,87347173,87358410,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87358497,87360366,87383748	0.710526
heart_male_adult_34_years	chr9	116605987	116605988	116605987	-	RAMPAGE_only	7	7	10	0.368812	2.641604	chr9	116605863	116606013	SINE|MIR|MIR3	+	chr9	116425224	116687215	ASTN2|NM_198186.3	-	116425224,116440608,116442452,116487358,116618323,116620309,116651527,116686696	116426088,116440792,116442553,116487500,116618472,116620443,116651793,116687215	0.600000
heart_male_adult_34_years	chr4	94460564	94460586	94460564	+	RAMPAGE_only	2	2	7	0.258169	2.521641	chr4	94460474	94460640	SINE|Alu|FRAM	+	chr4	94455244	94588127	PDLIM5|ENST00000508216.5	+	94455244,94523723,94573350,94575942,94584985,94585564,94586407,94586988	94455384,94523875,94573393,94576034,94585003,94585737,94586444,94588127	0.714286
heart_male_adult_34_years	chr16	72014341	72014342	72014341	+	High_confidence	8	8	11	0.405694	2.594907	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	1.000000
heart_male_adult_34_years	chr5	78387717	78387749	78387748	+	RAMPAGE_only	7	7	38	1.401487	4.731884	chr5	78382819	78388024	LINE|L1|L1PB1	-	chr5	78360804	78416588	SCAMP1|ENST00000510030.2	+	78360804,78388836,78415519,78416540	78361056,78388914,78415618,78416588	0.605263
heart_male_adult_34_years	chr6	31400605	31400620	31400605	-	High_confidence	83	87	183	6.749266	4.795414	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31394288	31400611	STRG.42614.1	-	31394288,31398058	31395217,31400611	0.994536
heart_male_adult_34_years	chr19	34860633	34860680	34860633	-	High_confidence	9	10	28	1.032675	4.307355	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.500000
heart_male_adult_34_years	chr11	126207584	126207609	126207608	-	RAMPAGE_only	3	4	11	0.405694	2.921928	chr11	126207561	126207848	SINE|Alu|AluSz	+	chr11	126203321	126206512	RPUSD4|ENST00000530903.1	-	126203321,126204230,126205467,126205687	126203657,126204328,126205612,126206512	0.818182
heart_male_adult_34_years	chr8	93795166	93795216	93795166	+	High_confidence	10	11	29	1.069556	4.323161	chr8	93794953	93795181	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.793103
heart_male_adult_34_years	chr4	48012935	48012945	48012944	-	High_confidence	8	8	19	0.700743	4.037401	chr4	48012591	48013262	LTR|ERV1|MER4-int	-	chr4	47935976	48012944	CNGA1|NM_000087.3	-	47935976,47940762,47942040,47943180,47943370,47949832,47951352,47952582,47981392,48010793,48012888	47937829,47940869,47942148,47943288,47943412,47949895,47951469,47952703,47981500,48010893,48012944	1.000000
heart_male_adult_34_years	chr3	111867981	111867982	111867981	-	High_confidence	6	8	9	0.331931	2.500000	chr3	111867691	111867999	SINE|Alu|AluJb	-	chr3	111861402	111868042	STRG.23836.1	-	111861402,111867900	111861643,111868042	0.666667
heart_male_adult_34_years	chr7	149719350	149719351	149719350	+	High_confidence	7	7	8	0.295050	2.521641	chr7	149718995	149719389	LTR|ERVL-MaLR|MLT1C	-	chr7	149719421	149720990	KRBA1|ENST00000497895.5	+	149719421,149720007,149720834	149719672,149720127,149720990	0.500000
heart_male_adult_34_years	chr16	87885943	87885958	87885957	-	RAMPAGE_only	7	7	18	0.663862	3.419382	chr16	87885635	87886020	LINE|L2|L2a	+	chr16	87881545	87936516	CA5A|ENST00000309893.3	-	87881545,87891798,87901911,87902424,87904785,87926747,87936308	87888272,87891954,87901974,87902520,87904904,87926945,87936516	1.000000
heart_male_adult_34_years	chr3	63146363	63146407	63146380	+	RAMPAGE_only	33	35	142	5.237135	4.869561	chr3	63146255	63146817	LTR|ERVL|MLT2B3	+	chr3	63148327	63149797	STRG.22541.2	+	63148327	63149797	0.788732
heart_male_adult_34_years	chr14	81427409	81427442	81427441	-	High_confidence	3	3	8	0.295050	2.807355	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.500000
heart_male_adult_34_years	chr9	73445632	73445698	73445697	+	High_confidence	114	190	859	31.680981	7.377923	chr9	73445447	73445884	LTR|ERV1|LTR19A	+	chr9	73445640	73550514	STRG.60533.3	+	73445640,73465113	73465079,73550514	0.923166
heart_male_adult_34_years	chr6	2990740	2990755	2990754	-	High_confidence	37	38	141	5.200254	3.872465	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989613	2990753	STRG.41278.1	-	2989613,2990670	2990011,2990753	1.000000
heart_male_adult_34_years	chr1	155637559	155637604	155637559	-	High_confidence	29	30	99	3.651242	4.820796	chr1	155637451	155637661	LTR|ERV1|LTR12F	-	chr1	155626693	155637710	STRG.6152.12	-	155626693,155637393	155634846,155637710	0.969697
heart_male_adult_34_years	chr9	121286591	121286652	121286591	+	High_confidence	65	66	280	10.326746	6.393172	chr9	121286415	121286709	LINE|L2|L2b	+	chr9	121286591	121332656	GSN|ENST00000545652.6	+	121286591,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286761,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332656	0.907143
heart_male_adult_34_years	chr17	47067498	47067518	47067498	-	High_confidence	432	487	1855	68.414692	5.816640	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.931536
heart_male_adult_34_years	chr11	47186978	47186979	47186978	-	High_confidence	9	9	11	0.405694	3.095795	chr11	47186761	47186974	SINE|MIR|MIRc	-	chr11	47186573	47187365	STRG.69392.1	-	47186573	47187365	0.727273
heart_male_adult_34_years	chr9	128684452	128684480	128684466	-	High_confidence	4	4	21	0.774506	3.916127	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128682342	128684521	STRG.62896.1	-	128682342	128684521	0.952381
heart_male_adult_34_years	chr9	69307085	69307135	69307106	-	High_confidence	5	5	22	0.811387	3.884184	chr9	69306938	69307567	LTR|ERV1|MER41B	-	chr9	69296684	69307135	BANCR|ENST00000624238.2	-	69296684,69304935,69306147,69306853	69296867,69305077,69306290,69307135	0.909091
heart_male_adult_34_years	chr3	150736583	150736586	150736585	-	RAMPAGE_only	6	9	12	0.442575	3.459432	chr3	150736563	150736695	DNA|hAT-Charlie|MER5B	+	chr3	150734470	150738985	LOC101928105|NR_121657.1	-	150734470,150736341,150738850	150734864,150736515,150738985	0.500000
heart_male_adult_34_years	chr13	22432955	22432979	22432960	+	RAMPAGE_only	10	10	20	0.737625	3.826875	chr13	22432682	22433088	LTR|ERV1|MER57D	+	chr13	22428362	22457875	STRG.78603.1	+	22428362,22453459,22456196	22428672,22453933,22457875	0.950000
heart_male_adult_34_years	chr16	14487182	14487183	14487182	+	High_confidence	19	20	22	0.811387	3.975418	chr16	14487182	14487267	SINE|MIR|MIRc	-	chr16	14486785	14491413	STRG.90194.2	+	14486785,14491277	14491232,14491413	0.954545
heart_male_adult_34_years	chr9	113484732	113484733	113484732	+	RAMPAGE_only	10	10	10	0.368812	2.921928	chr9	113484629	113484751	SINE|MIR|MIR	+	chr9	113463731	113551719	STRG.62365.2	+	113463731,113479490,113483058,113484137,113485624,113495785,113497313,113498024,113505441,113506387,113507286,113508540,113514457,113517540,113522929,113529220,113536795,113541319	113463881,113479541,113483117,113484232,113485693,113495846,113497404,113501630,113505523,113506493,113507638,113508580,113514654,113517624,113523041,113529264,113536918,113551719	1.000000
heart_male_adult_34_years	chr1	201366036	201366048	201366036	-	High_confidence	3	4	10	0.368812	2.947703	chr1	201365815	201366035	SINE|MIR|MIRc	-	chr1	201360826	201366966	TNNT2|ENST00000515042.5	-	201360826,201361912,201362385,201363295,201364297,201365190,201365609,201366837	201361369,201362022,201362394,201363406,201364375,201365307,201365670,201366966	0.700000
heart_male_adult_34_years	chr14	40954674	40954701	40954700	+	High_confidence	3	3	6	0.221287	2.584963	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954710	41141048	LOC644919|NR_109758.1	+	40954710,40962789,40974339,41140833	40954952,40962842,40974390,41141048	0.666667
heart_male_adult_34_years	chr3	164451400	164451443	164451400	+	High_confidence	12	14	24	0.885150	3.886842	chr3	164449656	164452200	LINE|L1|L1PA15	-	chr3	164451257	164532563	STRG.26164.1	+	164451257,164532285	164451535,164532563	0.583333
heart_male_adult_34_years	chr6	38687130	38687152	38687151	-	RAMPAGE_only	15	15	89	3.282430	4.905054	chr6	38687125	38687432	LTR|ERVL|LTR16C	+	chr6	38675942	38683215	GLO1|ENST00000470973.1	-	38675942,38682011,38682807	38677383,38682101,38683215	0.674157
heart_male_adult_34_years	chr1	226364166	226364202	226364201	-	High_confidence	41	41	63	2.323518	5.419829	chr1	226364119	226364211	SINE|MIR|MIRb	-	chr1	226361318	226364372	PARP1|ENST00000463968.5	-	226361318,226361968,226363098,226363942	226361541,226362083,226363160,226364372	0.936508
heart_male_adult_34_years	chr12	106833865	106833894	106833893	+	RAMPAGE_only	5	5	11	0.405694	3.277613	chr12	106833733	106834125	LTR|ERVL-MaLR|MSTB	+	chr12	106822257	106887282	RIC8B|ENST00000470960.1	+	106822257,106825725,106842588,106843851,106851449,106860267,106868300,106870822,106874480,106878986,106879774,106885903	106823447,106825820,106842817,106843947,106851594,106860412,106868423,106870942,106874567,106879125,106879947,106887282	0.909091
heart_male_adult_34_years	chr12	29317862	29317900	29317865	-	High_confidence	19	19	54	1.991587	5.347480	chr12	29317690	29317914	SINE|MIR|MIRb	-	chr12	29280414	29317848	LOC100506606|NR_103860.1	-	29280414,29282163,29292214,29293065,29307849,29309770,29317707	29281542,29282360,29292328,29293540,29308044,29309903,29317848	0.685185
heart_male_adult_34_years	chr11	9716951	9716974	9716973	+	RAMPAGE_only	2	2	8	0.295050	2.521641	chr11	9716634	9717133	LINE|L2|L2	-	chr11	9720065	9738259	SWAP70|ENST00000534662.1	+	9720065,9724657,9728052,9729342,9732528,9738212	9720483,9724885,9728199,9729451,9732710,9738259	0.875000
heart_male_adult_34_years	chr8	18076304	18076330	18076304	-	High_confidence	39	42	73	2.692330	4.632284	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18066766	18076305	ASAH1|ENST00000637872.1	-	18066766,18069791,18071299,18075540,18076176	18067298,18069878,18071390,18075587,18076305	0.863014
heart_male_adult_34_years	chr15	36602722	36602761	36602760	+	RAMPAGE_only	4	6	16	0.590100	3.640224	chr15	36602690	36602996	SINE|Alu|AluY	+	chr15	36594899	36808453	C15orf41|ENST00000562877.5	+	36594899,36644277,36645222,36654097,36657832,36691684,36692125,36697322,36709222,36709855,36808323	36594918,36644323,36645287,36654158,36657905,36691764,36692175,36697390,36709288,36709961,36808453	0.812500
heart_male_adult_34_years	chr8	143281669	143281687	143281686	-	High_confidence	45	52	133	4.905204	5.890578	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143281069	143281665	MINCR|ENST00000524335.1	-	143281069,143281481	143281384,143281665	0.533835
heart_male_adult_34_years	chr8	2119286	2119300	2119299	+	High_confidence	3	3	7	0.258169	2.521641	chr8	2119298	2119410	LINE|L2|L2c	-	chr8	2119257	2140826	MYOM2|ENST00000519631.5	+	2119257,2123251,2123554,2124178,2129126,2140722	2119451,2123365,2123642,2124217,2129232,2140826	0.857143
heart_male_adult_34_years	chr10	57025647	57025654	57025647	+	High_confidence	25	25	46	1.696537	5.099436	chr10	57025620	57026209	DNA|hAT-Charlie|Charlie10	+	chr10	57025654	57040705	STRG.64866.2	+	57025654,57029599	57025693,57040705	0.934783
heart_male_adult_34_years	chr10	32954320	32954323	32954322	-	RAMPAGE_only	8	14	15	0.553219	3.093069	chr10	32953969	32954360	LINE|L2|L2	+	chr10	32928149	32955663	ITGB1|ENST00000480226.5	-	32928149,32929821,32932514,32935491,32955569	32928264,32930044,32932600,32935558,32955663	0.933333
heart_male_adult_34_years	chr19	20423690	20423704	20423703	-	RAMPAGE_only	7	10	28	1.032675	4.008622	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.571429
heart_male_adult_34_years	chr13	43055406	43055407	43055406	+	RAMPAGE_only	6	6	8	0.295050	2.807355	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.500000
heart_male_adult_34_years	chr12	9065160	9065174	9065167	+	RAMPAGE_only	6	6	20	0.737625	3.884184	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9062724	9094175	STRG.73765.2	+	9062724	9094175	1.000000
heart_male_adult_34_years	chr1	153967486	153967512	153967486	+	High_confidence	12	12	26	0.958912	4.103910	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.884615
heart_male_adult_34_years	chr6	137218725	137218745	137218725	-	High_confidence	5	6	10	0.368812	2.921928	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.900000
heart_male_adult_34_years	chr7	111413976	111414017	111413976	-	RAMPAGE_only	17	19	86	3.171786	5.690339	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	110663425	111521447	STRG.51829.2	-	110663425,110886592,110963499,111390570,111453230,111487237,111521312	110663721,110886695,110963565,111413891,111483728,111487341,111521447	0.720930
heart_male_adult_34_years	chr16	81181283	81181362	81181330	-	High_confidence	29	29	142	5.237135	5.424001	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.908451
heart_male_adult_34_years	chr11	86955933	86955950	86955949	+	High_confidence	6	6	14	0.516337	3.182006	chr11	86955862	86955972	SINE|MIR|MIRb	+	chr11	86956090	87000490	AP001528.1|ENST00000531827.1	+	86956090,86957981,86999875	86956260,86958026,87000490	0.785714
heart_male_adult_34_years	chr1	8113397	8113408	8113397	-	High_confidence	3	3	11	0.405694	2.921928	chr1	8113385	8113594	LTR|ERVL-MaLR|MLT1E3	-	chr1	8110202	8113416	STRG.315.1	-	8110202,8113340	8111005,8113416	0.818182
heart_male_adult_34_years	chr19	47780107	47780108	47780107	+	High_confidence	50	56	65	2.397280	5.250702	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.923077
heart_male_adult_34_years	chr15	75347042	75347066	75347042	+	High_confidence	5	5	17	0.626981	3.454822	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.764706
heart_male_adult_34_years	chr5	18746155	18746169	18746155	-	High_confidence	3	3	8	0.295050	3.000000	chr5	18746065	18746356	LTR|ERV1|LTR12F	-	chr5	18742305	18746156	STRG.34909.1	-	18742305	18746156	0.500000
heart_male_adult_34_years	chr4	143350380	143350449	143350400	+	RAMPAGE_only	167	191	600	22.128741	6.015483	chr4	143350396	143350702	SINE|Alu|AluSp	+	chr4	143337177	143438041	GAB1|ENST00000514639.5	+	143337177,143415476,143433490,143434087,143437998	143337260,143415771,143433716,143434168,143438041	0.893333
heart_male_adult_34_years	chr14	102235451	102235481	102235458	-	High_confidence	30	33	67	2.471043	5.015996	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.850746
heart_male_adult_34_years	chr20	25191790	25191795	25191790	-	High_confidence	8	8	21	0.774506	2.865577	chr20	25191623	25192078	LTR|ERVL|MER70A	-	chr20	25180483	25192004	STRG.102475.1	-	25180483,25186896,25187852,25191726	25186160,25186979,25190302,25192004	0.809524
heart_male_adult_34_years	chr6	46489103	46489129	46489128	-	RAMPAGE_only	3	3	14	0.516337	3.180833	chr6	46489069	46489441	LINE|L2|L2c	+	chr6	46220729	46491323	RCAN2|NM_001251974.1	-	46220729,46246747,46248722,46456751,46491172	46223301,46246919,46248896,46456978,46491323	0.857143
heart_male_adult_34_years	chr2	108607146	108607147	108607146	+	High_confidence	6	7	7	0.258169	2.521641	chr2	108606979	108607192	LTR|ERVL-MaLR|MLT1A0	+	chr2	108607160	108684448	LIMS1|ENST00000410093.5	+	108607160,108659604,108670780,108672324,108672879,108675877,108676605,108677978,108680694,108683884	108607255,108659764,108670847,108672445,108673029,108676028,108676698,108678027,108680770,108684448	0.857143
heart_male_adult_34_years	chr1	234676417	234676442	234676441	+	RAMPAGE_only	7	7	37	1.364606	4.683542	chr1	234675974	234676570	LINE|L1|L1ME3A	+	chr1	234674095	234683176	AL160408.1|ENST00000453568.1	+	234674095,234680810,234682691	234674126,234680925,234683176	0.567568
heart_male_adult_34_years	chrX	7147281	7147288	7147281	+	High_confidence	2	2	8	0.295050	2.521641	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.625000
heart_male_adult_34_years	chr10	113623544	113623577	113623544	-	RAMPAGE_only	29	29	77	2.839855	5.278464	chr10	113623541	113623581	LINE|RTE-X|L4_B_Mam	+	chr10	113588715	113664046	NRAP|ENST00000369360.7	-	113588715,113589665,113590577,113592193,113595622,113597085,113597968,113604608,113605761,113606177,113608413,113610458,113612233,113614182,113614838,113615711,113617454,113620603,113621868,113623528,113624825,113626046,113628916,113629587,113631508,113631852,113633083,113634111,113640226,113641364,113645824,113646922,113650036,113650437,113651802,113652934,113654020,113657469,113662678,113663351,113663810	113589079,113589797,113590889,113592301,113595727,113597184,113598073,113604920,113605869,113606282,113608512,113610563,113612431,113614296,113614946,113615816,113617553,113620708,113622180,113623636,113624930,113626145,113629021,113629785,113631630,113631964,113633188,113634210,113640331,113641472,113645941,113647027,113650141,113650545,113651907,113653039,113654125,113657574,113662766,113663446,113664046	0.935065
heart_male_adult_34_years	chr10	114182206	114182235	114182234	+	High_confidence	20	21	79	2.913618	5.230254	chr10	114182000	114182250	LINE|CR1|L3	+	chr10	114182205	114232875	STRG.67260.1	+	114182205,114187825,114190960,114199172,114201409,114202237,114203071,114203387,114204072,114204721,114206243,114210580,114210859,114211865,114213345,114213976,114217544,114218413,114220567,114221356,114222586,114226048,114227071,114227909,114228037	114182367,114188156,114191019,114199317,114201515,114202298,114203176,114203567,114204216,114204893,114206330,114210748,114210967,114212036,114213588,114214114,114217655,114218584,114220843,114221476,114222703,114226216,114227299,114227956,114232875	0.949367
heart_male_adult_34_years	chr7	98329491	98329518	98329491	-	RAMPAGE_only	11	11	21	0.774506	3.646439	chr7	98329147	98330304	LINE|L1|L1MCa	+	chr7	98317236	98355426	BAIAP2L1|ENST00000473569.1	-	98317236,98320057,98320236,98355041	98317356,98320129,98320298,98355426	0.857143
heart_male_adult_34_years	chr11	73272217	73272241	73272240	+	High_confidence	8	8	14	0.516337	3.026987	chr11	73272218	73272327	SINE|MIR|MIRc	+	chr11	73272201	73298617	P2RY6|ENST00000393590.2	+	73272201,73296484	73272466,73298617	0.785714
heart_male_adult_34_years	chr9	4606209	4606255	4606230	-	RAMPAGE_only	3	4	12	0.442575	3.251629	chr9	4605799	4611811	LINE|L1|L1PA3	+	chr9	4588820	4666423	SPATA6L|ENST00000461761.5	-	4588820,4596434,4600652,4604178,4605346,4617922,4618863,4622407,4625326,4629090,4635274,4656040,4661898,4666211	4588961,4596530,4600809,4604269,4605440,4618110,4618898,4622510,4625566,4629168,4635399,4656089,4662036,4666423	0.583333
heart_male_adult_34_years	chr22	39021146	39021163	39021155	+	High_confidence	9	9	38	1.401487	4.309731	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
heart_male_adult_34_years	chr16	20674558	20674598	20674597	+	High_confidence	5	5	16	0.590100	3.500000	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.812500
heart_male_adult_34_years	chr17	1115399	1115409	1115399	-	High_confidence	4	4	13	0.479456	3.238901	chr17	1115307	1115433	LINE|L2|L2b	+	chr17	1072732	1115436	ABR|ENST00000570441.5	-	1072732,1073624,1079329,1083519,1091664,1100636,1115275	1072754,1073677,1079390,1083627,1091850,1100735,1115436	1.000000
heart_male_adult_34_years	chr3	12994707	12994740	12994739	-	High_confidence	2	2	7	0.258169	2.584963	chr3	12994635	12994703	SINE|MIR|MIRc	-	chr3	12908348	12994384	IQSEC1|ENST00000648386.1	-	12908348,12909272,12911628,12913427,12915103,12915593,12920429,12922119,12924580,12935447,12941570,12994080	12908525,12909434,12911728,12913553,12915133,12915733,12920596,12922242,12924742,12936697,12941865,12994384	0.857143
heart_male_adult_34_years	chr7	123553338	123553339	123553338	-	RAMPAGE_only	17	22	23	0.848268	4.011365	chr7	123553169	123553535	LTR|ERVL-MaLR|THE1B	-	chr7	123541095	123557455	NDUFA5|ENST00000378795.8	-	123541095,123545610,123550469,123557403	123542220,123545676,123550586,123557455	0.913043
heart_male_adult_34_years	chr1	148900879	148900917	148900916	+	RAMPAGE_only	20	25	74	2.729211	5.141401	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148889783	148932725	PDE4DIP|ENST00000612094.1	+	148889783,148929196,148932112	148889894,148931923,148932725	0.621622
heart_male_adult_34_years	chr1	77933014	77933086	77933085	+	RAMPAGE_only	8	8	42	1.549012	4.355539	chr1	77932883	77933190	SINE|Alu|AluSp	+	chr1	77931661	77943199	NEXN|ENST00000480732.2	+	77931661,77933047,77935822,77942022,77942460	77932054,77933479,77936044,77942208,77943199	0.928571
heart_male_adult_34_years	chr4	55947926	55947972	55947926	-	High_confidence	17	17	43	1.585893	4.074969	chr4	55947862	55947994	LTR|ERV1|MER51D	-	chr4	55934461	55948004	STRG.29512.4	-	55934461,55947839	55940632,55948004	0.697674
heart_male_adult_34_years	chr17	76740508	76740524	76740508	+	RAMPAGE_only	8	8	22	0.811387	3.689704	chr17	76740464	76740701	SINE|MIR|MIR	+	chr17	76742190	76769840	MFSD11|ENST00000585584.5	+	76742190,76743397,76744321,76745392,76754046,76767385,76769745	76742273,76743456,76744466,76745439,76754087,76767451,76769840	0.636364
heart_male_adult_34_years	chr4	119127338	119127344	119127338	-	RAMPAGE_only	5	5	10	0.368812	2.947703	chr4	119127197	119127483	SINE|Alu|AluSp	-	chr4	119106425	119128339	STRG.31915.3	-	119106425,119122206	119120101,119128339	0.900000
heart_male_adult_34_years	chr1	192925779	192925810	192925803	-	High_confidence	18	19	62	2.286637	4.896720	chr1	192925361	192925790	DNA|TcMar-Tigger|Tigger2a	-	chr1	192725880	192925752	AL390957.1|ENST00000645822.1	-	192725880,192764807,192766038,192792298,192826903,192925611	192726838,192764955,192766194,192792468,192826961,192925752	0.709677
heart_male_adult_34_years	chr8	93795760	93795761	93795760	+	High_confidence	27	33	37	1.364606	4.185824	chr8	93795732	93795826	SINE|Alu|FLAM_A	+	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.945946
heart_male_adult_34_years	chr14	102083105	102083142	102083122	-	RAMPAGE_only	3	3	18	0.663862	3.503258	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.944444
heart_male_adult_34_years	chr4	99274028	99274031	99274028	+	RAMPAGE_only	6	6	12	0.442575	2.845351	chr4	99273774	99274067	LTR|ERVL-MaLR|MLT1E1A	+	chr4	99267670	99275051	AP002026.1|ENST00000510764.1	+	99267670,99274124,99274961	99267836,99274255,99275051	0.750000
heart_male_adult_34_years	chr19	9140393	9140428	9140393	+	High_confidence	21	21	66	2.434162	4.964354	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140392	9161433	STRG.98892.2	+	9140392,9155924,9156611,9157979,9158825,9160113	9140592,9156041,9157394,9158075,9158908,9161433	0.787879
heart_male_adult_34_years	chr10	67076929	67076933	67076929	-	RAMPAGE_only	3	3	8	0.295050	2.750000	chr10	67076859	67077820	LINE|L2|L2a	+	chr10	66766154	67180443	CTNNA3|ENST00000494580.1	-	66766154,66775443,67180316	66766416,66775524,67180443	0.750000
heart_male_adult_34_years	chrX	5726193	5726194	5726193	-	High_confidence	19	21	27	0.995793	3.973661	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.666667
heart_male_adult_34_years	chr14	39004247	39004590	39004571	-	High_confidence	64	98	582	21.464879	6.411122	chr14	39004443	39004660	SINE|MIR|MIR3	+	chr14	38838888	39004597	STRG.82479.14	-	38838888,38996353,39004078	38839204,38997717,39004597	0.886598
heart_male_adult_34_years	chr9	68957191	68957212	68957211	-	RAMPAGE_only	4	4	12	0.442575	3.084963	chr9	68956991	68957380	LTR|ERVL-MaLR|MLT1L	-	chr9	68948919	68975901	STRG.60329.1	-	68948919,68965848,68975663	68957211,68972641,68975901	1.000000
heart_male_adult_34_years	chr11	46274403	46274436	46274435	-	High_confidence	3	3	13	0.479456	2.873141	chr11	46274366	46274400	SINE|MIR|MIR1_Amn	-	chr11	46256354	46274547	LINC02489|ENST00000527239.1	-	46256354,46274380	46256541,46274547	0.769231
heart_male_adult_34_years	chrY	19076175	19076181	19076180	+	High_confidence	6	6	14	0.516337	3.238901	chrY	19076206	19076517	SINE|Alu|AluY	+	chrY	19076180	19076568	STRG.111823.1	+	19076180	19076568	0.571429
heart_male_adult_34_years	chr13	24580610	24580613	24580610	+	High_confidence	3	3	9	0.331931	2.750000	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.888889
heart_male_adult_34_years	chr5	140700445	140700455	140700446	+	High_confidence	665	1289	3001	110.680588	4.999892	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.984339
heart_male_adult_34_years	chr11	100715407	100715410	100715407	+	RAMPAGE_only	84	84	140	5.163373	5.904666	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.571429
heart_male_adult_34_years	chr7	10156963	10156967	10156966	-	High_confidence	20	20	34	1.253962	3.567756	chr7	10156826	10157309	LTR|ERV1|LTR39	+	chr7	10151195	10157122	STRG.48401.1	-	10151195	10157122	0.941176
heart_male_adult_34_years	chr3	156547617	156547623	156547620	-	RAMPAGE_only	12	12	42	1.549012	3.345415	chr3	156547519	156547912	LINE|RTE-X|L4_C_Mam	+	chr3	156543061	156548997	SSR3|ENST00000464138.1	-	156543061,156544307,156548804	156543269,156544439,156548997	0.833333
heart_male_adult_34_years	chr9	73452819	73452820	73452819	+	RAMPAGE_only	6	6	6	0.221287	2.584963	chr9	73452617	73452998	LTR|ERVL-MaLR|MSTA	+	chr9	73445640	73550514	STRG.60533.3	+	73445640,73465113	73465079,73550514	0.833333
heart_male_adult_34_years	chr11	2375370	2375404	2375372	-	High_confidence	296	437	908	33.488162	5.657815	chr11	2375301	2375633	LINE|L2|L2b	+	chr11	2369681	2375435	STRG.67897.1	-	2369681,2375298	2373245,2375435	0.988987
heart_male_adult_34_years	chr21	33931121	33931157	33931121	+	High_confidence	3	3	15	0.553219	3.093069	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931121	33971186	LINC00649|NR_038883.2	+	33931121,33945809,33969236	33931742,33945895,33971186	0.933333
heart_male_adult_34_years	chr11	47214443	47214469	47214462	+	High_confidence	22	23	96	3.540599	4.626142	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214464	47216873	DDB2|ENST00000622878.4	+	47214464,47215070,47216335,47216857	47214674,47215263,47216472,47216873	0.906250
heart_male_adult_34_years	chr4	90235178	90235200	90235187	+	High_confidence	3	3	13	0.479456	3.418296	chr4	90235152	90235531	LTR|Gypsy?|LTR88c	-	chr4	90235030	90782004	CCSER1|NM_207491.2	+	90235030,90308243,90312862,90400035,90468233,90628024,90723913,90780441	90235343,90309608,90313047,90400129,90468354,90628232,90723991,90782004	0.846154
heart_male_adult_34_years	chr15	39747442	39747447	39747442	-	RAMPAGE_only	6	6	13	0.479456	3.251629	chr15	39747429	39747633	LINE|L1|L1M6	-	chr15	39600030	39782830	FSIP1|ENST00000350221.3	-	39600030,39617734,39713443,39726588,39738090,39739664,39741804,39763820,39765591,39770426,39776398,39782627	39600926,39618245,39713581,39726747,39738201,39739789,39741900,39763914,39765746,39770610,39776531,39782830	0.615385
heart_male_adult_34_years	chr14	68947559	68947560	68947559	-	High_confidence	7	7	8	0.295050	2.807355	chr14	68947337	68947577	SINE|MIR|MIRb	-	chr14	68910019	68947548	ACTN1|ENST00000553779.5	-	68910019,68912155,68921005,68925557,68947363	68910042,68912242,68921125,68925672,68947548	0.875000
heart_male_adult_34_years	chr2	11345441	11345456	11345441	-	High_confidence	5	5	18	0.663862	3.146286	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11179758	11345407	ROCK2|NM_001321643.1	-	11179758,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345407	0.944444
heart_male_adult_34_years	chr6	36869381	36869393	36869381	-	RAMPAGE_only	3	3	11	0.405694	2.721928	chr6	36869287	36869462	LTR|ERVL-MaLR|MSTC	-	chr6	36854826	36875024	PPIL1|ENST00000373699.5	-	36854826,36856585,36871717,36874716	36856033,36856654,36871872,36875024	0.909091
heart_male_adult_34_years	chr13	37934721	37934767	37934749	+	High_confidence	76	76	506	18.661905	6.572614	chr13	37934381	37935273	LTR|ERV1|LTR1D	-	chr13	37934564	38071435	STRG.79043.1	+	37934564,37997811,38013403,38029648,38043950,38065344	37935037,37997937,38013501,38029691,38044170,38071435	0.938735
heart_male_adult_34_years	chr19	9709659	9709660	9709659	+	High_confidence	13	13	14	0.516337	3.392747	chr19	9709309	9709779	LTR|ERV1|LTR10A	+	chr19	9709632	9719941	STRG.98928.1	+	9709632,9719542	9709992,9719941	0.928571
heart_male_adult_34_years	chr1	49257817	49257818	49257817	-	RAMPAGE_only	4	4	7	0.258169	2.584963	chr1	49257178	49257818	LINE|L1|L1PA3	-	chr1	48817506	50023900	AGBL4|ENST00000371836.1	-	48817506,48867190,49045583,49245769,49697312,49851395,50023762	48818222,48867230,49045800,49245864,49697437,49851518,50023900	0.857143
heart_male_adult_34_years	chr14	106845843	106845859	106845858	-	High_confidence	5	5	10	0.368812	2.921928	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106802693	106846255	STRG.85578.2	-	106802693,106803107,106845802	106803004,106810746,106846255	0.800000
heart_male_adult_34_years	chr14	21003942	21003955	21003942	+	High_confidence	10	10	23	0.848268	3.762267	chr14	21003917	21004810	LTR|ERV1|PABL_A-int	+	chr14	21003951	21006133	STRG.81648.1	+	21003951	21006133	0.956522
heart_male_adult_34_years	chr9	104763732	104763798	104763762	+	High_confidence	9	9	50	1.844062	4.774684	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	0.980000
heart_male_adult_34_years	chr9	539513	539514	539513	+	RAMPAGE_only	6	6	6	0.221287	2.584963	chr9	539493	539786	SINE|Alu|AluJo	-	chr9	547316	549531	AL392089.1|ENST00000441028.1	+	547316,549189	547341,549531	0.500000
heart_male_adult_34_years	chr11	77672375	77672414	77672375	-	RAMPAGE_only	5	6	22	0.811387	3.749903	chr11	77672368	77672530	SINE|Alu|AluJb	-	chr11	77659995	77700998	STRG.70534.3	-	77659995,77672041,77675035,77676791,77678085,77683709,77685104,77691158,77693506,77698486,77700729	77667491,77672230,77675256,77676999,77678153,77683819,77685159,77691238,77693611,77698693,77700998	0.954545
heart_male_adult_34_years	chr1	237031689	237031703	237031702	+	High_confidence	8	8	20	0.737625	3.641446	chr1	237031474	237032167	LTR|ERV1|LTR78	-	chr1	237031690	237032143	STRG.12876.1	+	237031690	237032143	0.900000
heart_male_adult_34_years	chr11	65181215	65181293	65181215	+	High_confidence	5	5	32	1.180200	4.453881	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.968750
heart_male_adult_34_years	chr16	4355592	4355593	4355592	-	High_confidence	190	195	195	7.191841	5.598682	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.928205
heart_male_adult_34_years	chr7	145681356	145681411	145681389	-	High_confidence	18	32	97	3.577480	5.782676	chr7	145681186	145681435	LINE|L1|L1MB5	-	chr7	145665185	145681369	STRG.53073.1	-	145665185,145677865,145681108	145676292,145677980,145681369	0.845361
heart_male_adult_34_years	chr5	997313	997334	997318	-	High_confidence	157	168	479	17.666112	6.422529	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.764092
heart_male_adult_34_years	chr6	118514467	118514524	118514467	-	RAMPAGE_only	14	14	61	2.249755	5.414184	chr6	118514243	118514552	SINE|Alu|AluSz	+	chr6	118460771	118567013	STRG.45642.6	-	118460771,118469071,118470536,118479870,118480395,118481778,118483705,118491685,118523801,118537523	118466564,118469303,118470644,118479921,118480513,118481933,118483858,118511415,118523920,118567013	0.918033
heart_male_adult_34_years	chr1	201360453	201360602	201360453	-	RAMPAGE_only	35	35	107	3.946292	4.794944	chr1	201360361	201360542	SINE|MIR|MIR	-	chr1	201359007	201363350	TNNT2|ENST00000476888.5	-	201359007,201359622,201361278,201361950,201362385,201363295	201359255,201359663,201361369,201362022,201362394,201363350	0.691589
heart_male_adult_34_years	chr11	47351783	47351809	47351783	-	High_confidence	49	50	154	5.679710	6.117180	chr11	47351577	47351776	SINE|MIR|MIRb	-	chr11	47331396	47352702	MYBPC3|ENST00000545968.5	-	47331396,47331844,47332071,47332565,47332813,47333193,47333556,47333921,47335041,47335876,47337390,47337689,47338519,47339323,47339650,47341002,47341137,47341990,47342577,47342829,47343020,47343259,47343491,47346206,47346626,47347026,47347425,47347650,47347856,47348423,47349773,47350013,47350501,47351238,47352622	47331716,47331881,47332258,47332702,47332973,47333333,47333752,47334010,47335209,47336011,47337579,47337794,47338679,47339404,47339790,47341032,47341244,47342156,47342744,47342935,47343145,47343262,47343624,47346370,47346644,47347029,47347479,47347680,47347905,47348541,47349922,47350112,47350615,47351505,47352702	0.649351
heart_male_adult_34_years	chr1	6820195	6820198	6820195	+	RAMPAGE_only	5	5	11	0.405694	2.646439	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.636364
heart_male_adult_34_years	chr17	68520135	68520136	68520135	+	RAMPAGE_only	25	29	31	1.143318	4.323161	chr17	68519963	68520291	LTR|ERVL-MaLR|MLT1I	-	chr17	68515399	68551319	PRKAR1A|ENST00000588188.6	+	68515399,68522755,68523724,68524015,68524911,68525753,68527839,68528869,68529919,68551083	68515576,68522926,68523816,68524077,68524958,68525912,68527900,68528991,68530001,68551319	0.903226
heart_male_adult_34_years	chr9	20658312	20658349	20658338	+	High_confidence	28	28	94	3.466836	4.590165	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.787234
heart_male_adult_34_years	chr20	64265445	64265473	64265460	+	High_confidence	7	9	32	1.180200	4.327820	chr20	64265443	64265603	SINE|MIR|MIR	-	chr20	64265511	64273545	PCMTD2|ENST00000609818.1	+	64265511,64267886,64273220	64265613,64268010,64273545	0.968750
heart_male_adult_34_years	chr8	136530770	136530792	136530791	+	High_confidence	4	4	9	0.331931	2.750000	chr8	136530234	136530974	LTR|ERV1|LTR12C	-	chr8	136530770	137092183	LINC02055|ENST00000649576.1	+	136530770,136536977,136789834,136797273,136896984,136961739,137074249,137090409,137091340	136531006,136537059,136789889,136797370,136897078,136961851,137074367,137090503,137092183	0.555556
heart_male_adult_34_years	chr2	228378432	228378500	228378499	+	High_confidence	7	12	33	1.217081	4.127283	chr2	228377948	228378523	LTR|ERVL-MaLR|MLT1E3	+	chr2	228378108	228510569	STRG.18917.1	+	228378108,228406975,228501946,228510321	228378584,228407072,228502442,228510569	0.575758
heart_male_adult_34_years	chr5	149509878	149509879	149509878	-	RAMPAGE_only	10	10	12	0.442575	2.688722	chr5	149509722	149509839	SINE|Alu|AluJb	-	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.833333
heart_male_adult_34_years	chr10	10911570	10911605	10911604	+	RAMPAGE_only	3	3	16	0.590100	3.640224	chr10	10911494	10911655	LTR|ERVL|LTR86B1	-	chr10	10798623	11331257	CELF2|ENST00000636488.1	+	10798623,10919963,11165485,11217424,11249152,11257737,11266597,11270665,11275056,11288417,11314138,11321206,11325835,11328925	10798817,10919999,11165682,11217507,11249201,11257872,11266677,11270824,11275120,11288552,11314258,11321386,11325979,11331257	0.500000
heart_male_adult_34_years	chr11	77175226	77175303	77175302	+	High_confidence	12	13	42	1.549012	4.624111	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175227	77215238	STRG.70500.3	+	77175227,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353,77197480,77198494,77199648,77201447,77202299,77203059,77204075,77205461,77206096,77207288,77208429,77208696,77211151,77211820,77212951,77213859,77214606	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194524,77197598,77198621,77199818,77201638,77202424,77203217,77204229,77205617,77206202,77207402,77208517,77208803,77211337,77211937,77213035,77213979,77215238	1.000000
heart_male_adult_34_years	chr2	33706869	33706870	33706869	+	High_confidence	28	29	41	1.512131	5.016089	chr2	33706674	33707027	LTR|ERVL-MaLR|THE1A	+	chr2	33706812	33945053	STRG.11155.1	+	33706812,33855687,33926839,33944427	33706953,33855753,33926968,33945053	0.536585
heart_male_adult_34_years	chr21	42524957	42524976	42524962	+	RAMPAGE_only	3	3	12	0.442575	3.277613	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42513913	42581440	SLC37A1|ENST00000352133.2	+	42513913,42518276,42525775,42534697,42535471,42539511,42542403,42543435,42547102,42554061,42558957,42562077,42563814,42564707,42565826,42566984,42568359,42574817,42579735,42580344	42514717,42518510,42525857,42534830,42535550,42539647,42542480,42543602,42547140,42554142,42559089,42562168,42563877,42564793,42565875,42567058,42568438,42574915,42579800,42581440	0.583333
heart_male_adult_34_years	chr9	38949733	38949734	38949733	+	High_confidence	144	147	205	7.560653	5.379208	chr9	38949604	38949969	LTR|ERV1|LTR38B	+	chr9	38949739	38998631	STRG.59743.1	+	38949739,38950328,38964939,38997942	38949849,38950512,38965093,38998631	0.956098
heart_male_adult_34_years	chr4	48255295	48255303	48255295	-	High_confidence	15	15	37	1.364606	4.437577	chr4	48255094	48255505	LTR|ERVL-MaLR|MLT1K	-	chr4	48152010	48255501	STRG.29470.8	-	48152010,48156679,48163701,48167777,48168585,48170247,48171367,48176081,48228476,48255121	48152410,48156734,48163767,48167953,48168626,48170376,48171449,48176186,48228659,48255501	0.783784
heart_male_adult_34_years	chr14	76959680	76959684	76959680	+	High_confidence	5	5	9	0.331931	3.169925	chr14	76959706	76959809	LTR|ERVL-MaLR|MLT1L	+	chr14	76959568	76970153	STRG.84346.1	+	76959568,76965614,76969901	76959753,76965876,76970153	0.777778
heart_male_adult_34_years	chr1	201375809	201375921	201375870	-	RAMPAGE_only	7	7	96	3.540599	5.352207	chr1	201375784	201375836	LTR|Gypsy|MamGypLTR2b	-	chr1	201366842	201377652	STRG.8105.22	-	201366842,201367770,201368161,201372026,201372144,201373213	201366871,201367806,201368227,201372041,201372155,201377652	0.927083
heart_male_adult_34_years	chr8	93795069	93795114	93795113	+	High_confidence	43	47	236	8.703972	5.151182	chr8	93794953	93795181	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.894068
heart_male_adult_34_years	chr12	8681599	8681600	8681599	+	High_confidence	23	23	30	1.106437	4.237291	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.966667
heart_male_adult_34_years	chr9	128921939	128921961	128921939	+	High_confidence	10	10	24	0.885150	4.334963	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.833333
heart_male_adult_34_years	chr4	119127258	119127294	119127277	-	RAMPAGE_only	3	3	12	0.442575	3.095795	chr4	119127197	119127483	SINE|Alu|AluSp	-	chr4	119106425	119128339	STRG.31915.3	-	119106425,119122206	119120101,119128339	0.583333
heart_male_adult_34_years	chr6	2949651	2949673	2949672	-	RAMPAGE_only	30	34	61	2.249755	5.426559	chr6	2949217	2950248	LINE|L2|L2a	+	chr6	2948169	2955882	SERPINB6|ENST00000644697.1	-	2948169,2948913,2953043,2954591	2948699,2949069,2953186,2955882	0.918033
heart_male_adult_34_years	chr15	71691468	71691551	71691522	-	High_confidence	12	12	50	1.844062	4.694879	chr15	71691454	71691674	SINE|MIR|MIRb	+	chr15	71685467	71691597	STRG.87800.1	-	71685467	71691597	0.880000
heart_male_adult_34_years	chr22	35615699	35615715	35615714	-	High_confidence	45	45	79	2.913618	4.806791	chr22	35615623	35615770	SINE|MIR|MIR3	-	chr22	35606763	35615713	MB|ENST00000401702.5	-	35606763,35610883,35615573	35607443,35611106,35615713	0.924051
heart_male_adult_34_years	chr1	149229360	149229374	149229360	-	RAMPAGE_only	101	118	301	11.101252	6.709845	chr1	149229335	149229457	SINE|MIR|MIR3	+	chr1	149175376	149240853	STRG.6113.7	-	149175376,149197995,149198360,149201013,149240376	149190531,149198171,149198484,149201090,149240853	0.930233
heart_male_adult_34_years	chr8	93794817	93794879	93794823	+	High_confidence	947	1041	2579	95.116707	7.036315	chr8	93794713	93794824	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.955797
heart_male_adult_34_years	chr1	202545977	202545978	202545977	+	RAMPAGE_only	7	7	8	0.295050	2.521641	chr1	202545787	202546325	LINE|L2|L2b	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.625000
heart_male_adult_34_years	chr16	3129638	3129661	3129660	-	RAMPAGE_only	5	5	11	0.405694	3.095795	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3128832	3132042	ZNF213-AS1|ENST00000573447.1	-	3128832,3131746	3129653,3132042	0.818182
heart_male_adult_34_years	chr4	141332616	141332617	141332616	-	High_confidence	1878	1881	2054	75.754058	4.618149	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.967868
heart_male_adult_34_years	chr6	152245185	152245239	152245220	+	High_confidence	4	5	22	0.811387	3.880180	chr6	152245147	152245470	LINE|L2|L2b	-	chr6	152245152	152248417	STRG.47565.1	+	152245152,152248094	152245522,152248417	0.636364
heart_male_adult_34_years	chr11	115194100	115194114	115194100	-	High_confidence	8	8	13	0.479456	3.251629	chr11	115194047	115194164	DNA?|DNA?|Eulor12	+	chr11	115176329	115194110	CADM1|ENST00000543375.5	-	115176329,115178643,115193837	115176592,115178775,115194110	0.692308
heart_male_adult_34_years	chr6	34301597	34301607	34301606	-	RAMPAGE_only	15	25	40	1.475249	4.484255	chr6	34301277	34301774	LTR|ERVL-MaLR|MLT1H	+	chr6	34279678	34392674	NUDT3|ENST00000607016.1	-	34279678,34293450,34295640,34341861,34392263	34288931,34293535,34295685,34341972,34392674	0.850000
heart_male_adult_34_years	chr16	20674753	20674763	20674762	+	High_confidence	9	9	17	0.626981	3.024397	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.588235
heart_male_adult_34_years	chr18	41632231	41632238	41632231	-	High_confidence	3	3	7	0.258169	2.584963	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41521337	41632124	KC6|ENST00000599934.1	-	41521337,41525354,41564798,41631999	41521496,41525526,41564898,41632124	0.571429
heart_male_adult_34_years	chr8	123025518	123025530	123025529	-	High_confidence	22	22	38	1.401487	4.280682	chr8	123025370	123025551	LINE|L2|L2b	+	chr8	123015441	123025650	DERL1|ENST00000519018.5	-	123015441,123019194,123021446,123022683,123023712,123024985,123025571	123015585,123019305,123021499,123022779,123023739,123025050,123025650	0.842105
heart_male_adult_34_years	chr8	12522422	12522478	12522463	+	RAMPAGE_only	5	5	19	0.700743	3.787144	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12520685	12572302	STRG.53912.3	+	12520685,12530942,12565885	12522846,12531031,12572302	0.947368
heart_male_adult_34_years	chr1	39026127	39026140	39026139	+	High_confidence	3	3	15	0.553219	3.235926	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.933333
heart_male_adult_34_years	chr7	122802348	122802362	122802348	-	RAMPAGE_only	9	9	19	0.700743	3.932138	chr7	122802319	122802451	LINE|L2|L2b	+	chr7	122320002	122886357	CADPS2|ENST00000449022.6	-	122320002,122325476,122345573,122360787,122360929,122379367,122387025,122388582,122393195,122393440,122407539,122414067,122416060,122438340,122441511,122451373,122471374,122474380,122480851,122490080,122491311,122513248,122554549,122581178,122615180,122621480,122629247,122663236,122736954,122885998	122320338,122325581,122345681,122360820,122361013,122379442,122387173,122388738,122393315,122393582,122407696,122414076,122416164,122438464,122441575,122451475,122471562,122474517,122480860,122490281,122491420,122513315,122554689,122581290,122615299,122621717,122629328,122663569,122737068,122886357	0.894737
heart_male_adult_34_years	chr3	121731461	121731478	121731461	-	RAMPAGE_only	6	6	10	0.368812	2.921928	chr3	121731351	121731515	SINE|Alu|AluSc8	-	chr3	121729127	121730216	GOLGB1|ENST00000472829.1	-	121729127,121729864	121729340,121730216	0.600000
heart_male_adult_34_years	chr1	56645650	56645752	56645650	+	High_confidence	8	8	52	1.917824	5.108758	chr1	56645691	56645853	SINE|MIR|MIR3	+	chr1	56645387	56715334	PRKAA2|ENST00000610361.1	+	56645387,56671440,56674380,56691393,56692357,56693764,56695934,56703970,56706091,56707474	56645474,56671447,56674522,56691487,56692502,56693852,56696159,56704475,56706218,56715334	0.500000
heart_male_adult_34_years	chr2	61971459	61971477	61971464	+	RAMPAGE_only	3	3	9	0.331931	2.750000	chr2	61971115	61971625	LTR|ERV1|LTR10D	-	chr2	61905646	62136247	COMMD1|ENST00000311832.5	+	61905646,62000700,62135830	61905858,62000982,62136247	0.888889
heart_male_adult_34_years	chr18	31227477	31227616	31227615	-	High_confidence	107	107	807	29.763157	6.280658	chr18	31226911	31227662	LINE|L2|L2	+	chr18	31129235	31227615	STRG.96862.1	-	31129235,31130792,31131593,31132567,31133890,31134571,31139747,31140041,31141998,31143656,31145610,31148497,31154773,31156042,31157370,31159444,31162531,31223660	31130711,31130838,31131842,31132689,31134130,31134784,31139890,31140301,31142184,31143791,31145777,31148642,31154929,31156162,31157573,31159529,31162848,31227615	0.977695
heart_male_adult_34_years	chr19	3062871	3062882	3062871	-	High_confidence	5	6	15	0.553219	3.323231	chr19	3062800	3062899	SINE|MIR|MIRc	+	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	1.000000
heart_male_adult_34_years	chr3	134485443	134485489	134485443	-	High_confidence	14	14	112	4.130698	5.717694	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134478075	134485989	STRG.24859.1	-	134478075,134482805,134485319,134485951	134478715,134482931,134485563,134485989	0.919643
heart_male_adult_34_years	chr10	106648750	106648785	106648764	+	High_confidence	27	27	146	5.384660	6.249579	chr10	106648676	106649439	LTR|ERV1|LTR1	+	chr10	106648732	106670742	STRG.66974.3	+	106648732,106667299	106665324,106670742	0.808219
heart_male_adult_34_years	chr5	176395298	176395322	176395298	-	RAMPAGE_only	3	3	15	0.553219	2.789898	chr5	176395154	176395342	LINE|L2|L2c	+	chr5	176392454	176416569	CLTB|NM_001834.3	-	176392454,176397606,176397929,176410256,176416176	176392945,176397718,176398047,176410303,176416569	1.000000
heart_male_adult_34_years	chr13	20832881	20832903	20832902	-	High_confidence	141	147	358	13.203482	5.327109	chr13	20832849	20832905	SINE|tRNA|LFSINE_Vert	-	chr13	20777328	20832896	STRG.78533.6	-	20777328,20786964,20787480,20788485,20790461,20796075,20796763,20799164,20800155,20800830,20807456,20808435,20809082,20809790,20821703,20822131,20832786	20783919,20787057,20787598,20788616,20790580,20796256,20797057,20799339,20800325,20800990,20807634,20808581,20809225,20809967,20821878,20822289,20832896	0.863128
heart_male_adult_34_years	chr2	186608076	186608102	186608101	+	High_confidence	3	3	15	0.553219	2.896292	chr2	186607713	186608293	LTR|ERVL?|LTR87	-	chr2	186607929	186680897	STRG.17016.3	+	186607929,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186608168,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186680897	0.733333
heart_male_adult_34_years	chr11	117877375	117877417	117877416	-	High_confidence	6	7	27	0.995793	4.056021	chr11	117877415	117877598	SINE|MIR|MIRb	+	chr11	117838234	117877430	FXYD6|ENST00000524841.5	-	117838234,117839780,117840236,117841147,117841790,117841989,117842718,117877298	117838277,117839830,117840368,117841184,117841865,117842028,117842781,117877430	0.740741
heart_male_adult_34_years	chr22	50756908	50756935	50756908	+	High_confidence	2	2	7	0.258169	2.584963	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.571429
heart_male_adult_34_years	chrX	5726115	5726132	5726116	-	High_confidence	12	17	42	1.549012	4.050920	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5717913	5726338	STRG.106982.1	-	5717913,5725929	5719872,5726338	0.952381
heart_male_adult_34_years	chr14	32075864	32075880	32075879	+	High_confidence	46	46	106	3.909411	5.254251	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32075792	32154827	STRG.81978.6	+	32075792,32090501,32117139,32146262,32149901,32152422,32154620	32076657,32094386,32117287,32146340,32150033,32152528,32154827	0.981132
heart_male_adult_34_years	chr1	19980361	19980362	19980361	-	High_confidence	6	8	8	0.295050	2.500000	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	1.000000
heart_male_adult_34_years	chr15	90103345	90103394	90103393	+	High_confidence	21	21	66	2.434162	5.248495	chr15	90103293	90103700	LTR|ERV1|MER39B	-	chr15	90102648	90133445	IDH2-DT|ENST00000561101.2	+	90102648,90103379,90117979,90133396	90102763,90103452,90118097,90133445	0.500000
heart_male_adult_34_years	chr14	76864137	76864138	76864137	-	High_confidence	16	17	19	0.700743	2.974938	chr14	76863961	76864121	LTR|ERVL|LTR67B	-	chr14	76809180	76864208	STRG.84411.5	-	76809180,76814306,76837851,76863961	76809643,76814421,76838001,76864208	0.631579
heart_male_adult_34_years	chr8	129752822	129752885	129752862	-	High_confidence	5	5	35	1.290843	3.653605	chr8	129752564	129757710	LINE|L1|L1MA2	+	chr8	129748195	129752886	GSDMC|ENST00000522273.5	-	129748195,129749451,129749989,129750430,129751541,129751861,129752105,129752697	129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752886	0.914286
heart_male_adult_34_years	chr4	151687295	151687334	151687314	-	High_confidence	94	94	363	13.387889	6.808299	chr4	151687184	151687573	LINE|L2|L2b	+	chr4	151670943	151687083	GATB|ENST00000507592.5	-	151670943,151672761,151679812,151686907	151671302,151672896,151679891,151687083	0.909091
heart_male_adult_34_years	chr6	141421627	141421630	141421627	+	RAMPAGE_only	4	4	8	0.295050	2.807355	chr6	141421530	141422111	LINE|L1|L1ME3A	-	chr6	141403289	141451006	STRG.46797.3	+	141403289,141419256	141419228,141451006	0.750000
heart_male_adult_34_years	chr15	80059918	80059933	80059918	+	High_confidence	177	195	352	12.982195	4.821566	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.982955
heart_male_adult_34_years	chr5	60533916	60533920	60533919	+	RAMPAGE_only	8	10	16	0.590100	2.952820	chr5	60533762	60534097	LTR|ERVL-MaLR|MSTD	+	chr5	60546218	60546349	RF02161|ENST00000619680.1	+	60546218	60546349	0.875000
heart_male_adult_34_years	chr7	12931675	12931679	12931677	+	RAMPAGE_only	10	25	29	1.069556	3.719376	chr7	12931485	12931838	LTR|ERVL-MaLR|THE1A	+	chr7	12922251	12946652	STRG.48584.1	+	12922251	12946652	0.931034
heart_male_adult_34_years	chr7	53811930	53811935	53811930	-	High_confidence	12	12	29	1.069556	3.923252	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.862069
heart_male_adult_34_years	chr6	43013392	43013393	43013392	-	High_confidence	12	12	14	0.516337	3.378783	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
heart_male_adult_34_years	chr3	14047196	14047206	14047205	-	High_confidence	87	117	193	7.118078	5.457509	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14040744	14047251	STRG.20296.1	-	14040744,14046812	14041628,14047251	0.766839
heart_male_adult_34_years	chr13	49495740	49495750	49495743	+	High_confidence	4	4	10	0.368812	2.947703	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495609	49528992	PHF11|NM_001040443.2	+	49495609,49506634,49513058,49518017,49520893,49522042,49523174,49524084,49526386,49528510	49496095,49506756,49513166,49518151,49520940,49522107,49523241,49524216,49526458,49528992	0.800000
heart_male_adult_34_years	chr6	141403304	141403481	141403371	+	High_confidence	84	90	445	16.412150	5.951207	chr6	141403283	141405210	LTR|ERV1|LOR1-int	+	chr6	141403289	141451006	STRG.46797.3	+	141403289,141419256	141419228,141451006	0.995506
heart_male_adult_34_years	chr17	59620048	59620081	59620051	+	High_confidence	7	8	45	1.659656	4.452444	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59695112	STRG.95132.1	+	59619942,59644275,59647397,59648239,59651202,59655853,59660390,59661442,59663841,59664786,59666102,59666479,59666796,59668776,59673646,59674700,59676953,59679396,59680911,59681294,59681646,59682270,59682628,59682906,59683094,59683386,59683624,59683874,59685055,59685586,59687000,59690635,59693727	59620173,59644483,59647666,59648401,59651316,59656027,59660588,59661643,59663994,59664909,59666240,59666644,59666977,59668940,59673772,59674843,59677188,59679519,59681057,59681478,59681839,59682428,59682793,59683014,59683262,59683536,59683756,59683985,59685226,59685808,59687021,59690711,59695112	0.933333
heart_male_adult_34_years	chr2	72693342	72693354	72693353	-	RAMPAGE_only	6	6	13	0.479456	3.084963	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.846154
heart_male_adult_34_years	chr12	50763491	50763541	50763521	+	High_confidence	7	7	26	0.958912	3.855389	chr12	50763350	50763657	SINE|Alu|AluJo	+	chr12	50763709	50814192	ATF1|ENST00000552510.5	+	50763709,50780139,50795908,50809455,50814009	50763741,50780238,50796009,50809589,50814192	0.884615
heart_male_adult_34_years	chr5	157288627	157288628	157288627	+	RAMPAGE_only	13	13	17	0.626981	3.499228	chr5	157288569	157288795	SINE|MIR|MIRb	-	chr5	157277058	157304300	CYFIP2|ENST00000621516.1	+	157277058,157285338,157287018,157288611,157294782,157296672,157300714,157302793,157304237	157277173,157285478,157287108,157288659,157294860,157296774,157300896,157302890,157304300	0.823529
heart_male_adult_34_years	chr2	54318971	54318988	54318972	-	High_confidence	4	6	15	0.553219	3.456565	chr2	54318680	54319163	LTR|ERVL|LTR53	+	chr2	54317158	54319236	STRG.12001.1	-	54317158	54319236	0.533333
heart_male_adult_34_years	chr18	41632127	41632141	41632127	-	High_confidence	3	3	11	0.405694	2.921928	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41521337	41632124	KC6|ENST00000599934.1	-	41521337,41525354,41564798,41631999	41521496,41525526,41564898,41632124	0.545455
heart_male_adult_34_years	chr7	6990719	6990734	6990719	+	High_confidence	14	15	41	1.512131	4.649758	chr7	6989229	6992060	LTR|ERV1|HERVS71-int	-	chr7	6990729	6992473	STRG.48305.1	+	6990729	6992473	0.926829
heart_male_adult_34_years	chr7	106598784	106598811	106598810	-	High_confidence	7	8	14	0.516337	3.324863	chr7	106598614	106598802	LTR|ERVL-MaLR|MLT1J	-	chr7	106596817	106598893	STRG.51733.2	-	106596817	106598893	0.642857
heart_male_adult_34_years	chr10	113662680	113662698	113662690	-	RAMPAGE_only	34	34	81	2.987380	5.071671	chr10	113662586	113662659	LINE|L1|L1MA4A	-	chr10	113588715	113664046	NRAP|ENST00000369360.7	-	113588715,113589665,113590577,113592193,113595622,113597085,113597968,113604608,113605761,113606177,113608413,113610458,113612233,113614182,113614838,113615711,113617454,113620603,113621868,113623528,113624825,113626046,113628916,113629587,113631508,113631852,113633083,113634111,113640226,113641364,113645824,113646922,113650036,113650437,113651802,113652934,113654020,113657469,113662678,113663351,113663810	113589079,113589797,113590889,113592301,113595727,113597184,113598073,113604920,113605869,113606282,113608512,113610563,113612431,113614296,113614946,113615816,113617553,113620708,113622180,113623636,113624930,113626145,113629021,113629785,113631630,113631964,113633188,113634210,113640331,113641472,113645941,113647027,113650141,113650545,113651907,113653039,113654125,113657574,113662766,113663446,113664046	0.938272
heart_male_adult_34_years	chr6	6739315	6739316	6739315	-	High_confidence	58	59	66	2.434162	5.159664	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6696493	6739330	STRG.41467.4	-	6696493,6710871,6711696,6734870	6705078,6710981,6711858,6739330	0.939394
heart_male_adult_34_years	chr9	108968026	108968053	108968028	-	RAMPAGE_only	4	6	22	0.811387	3.788755	chr9	108967933	108968046	DNA|hAT-Tip100|MER91A	-	chr9	108942578	108963555	CTNNAL1|ENST00000374594.1	-	108942578,108942960,108943702,108943961,108948185,108952208,108952443,108963497	108942834,108943044,108943816,108944018,108948234,108952363,108952494,108963555	0.681818
heart_male_adult_34_years	chr6	107542264	107542307	107542306	+	RAMPAGE_only	9	9	42	1.549012	4.784143	chr6	107541974	107542527	LINE|L2|L2a	-	chr6	107490112	107661309	SOBP|NM_018013.3	+	107490112,107503656,107506241,107533458,107587079,107633513,107658206	107490712,107503795,107506427,107533610,107587175,107635469,107661309	0.500000
heart_male_adult_34_years	chr13	106561950	106561951	106561950	-	High_confidence	28	29	29	1.069556	4.521641	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.896552
heart_male_adult_34_years	chr1	174874438	174874458	174874438	+	High_confidence	4	4	14	0.516337	3.039149	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874457	174958182	RABGAP1L|ENST00000478442.5	+	174874457,174877391,174957456,174957890	174874506,174877605,174957549,174958182	0.571429
heart_male_adult_34_years	chr12	77435847	77435896	77435874	+	RAMPAGE_only	12	12	33	1.217081	3.913401	chr12	77435615	77436232	LTR|ERVL-MaLR|MLT1E2	-	chr12	77378273	77593564	STRG.76727.13	+	77378273,77571858	77435984,77593564	0.909091
heart_male_adult_34_years	chr10	133369990	133370033	133369990	-	RAMPAGE_only	4	4	14	0.516337	3.128085	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
heart_male_adult_34_years	chr2	209495443	209495506	209495479	+	RAMPAGE_only	14	15	51	1.880943	4.826947	chr2	209495053	209495629	LINE|L1|L1P3	+	chr2	209424057	209730518	MAP2|ENST00000199940.10	+	209424057,209507591,209580035,209625052,209653141,209678571,209680749,209700276,209704449,209705579,209709913,209723594,209725708,209729849,209730181	209424276,209507641,209580100,209625129,209653432,209678685,209680827,209700338,209704620,209705727,209710254,209723687,209725790,209729962,209730518	0.784314
heart_male_adult_34_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	104	104	104	3.835649	4.185084	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
heart_male_adult_34_years	chr12	8681676	8681677	8681676	+	High_confidence	12	12	15	0.553219	3.807355	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.800000
heart_male_adult_34_years	chr13	48492781	48492790	48492783	-	High_confidence	4	6	11	0.405694	3.121928	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.818182
heart_male_adult_34_years	chr12	689822	689823	689822	+	High_confidence	17	18	22	0.811387	3.754442	chr12	689484	689961	LTR|ERV1|MER51E	+	chr12	689814	711232	STRG.73182.1	+	689814,702948,710974	690037,702998,711232	0.681818
heart_male_adult_34_years	chr4	79492585	79492616	79492595	+	High_confidence	10	12	41	1.512131	3.809163	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.951220
heart_male_adult_34_years	chr5	79689331	79689363	79689354	+	High_confidence	32	32	66	2.434162	5.120865	chr5	79689238	79689475	SINE|MIR|MIRb	+	chr5	79689835	79800226	CMYA5|NM_153610.4	+	79689835,79728914,79743826,79745221,79747090,79752675,79758752,79761810,79763061,79788970,79790969,79793436,79799369	79690056,79739403,79743922,79745455,79747113,79752794,79758902,79761957,79763209,79789104,79791069,79793610,79800226	0.515152
heart_male_adult_34_years	chr12	101824037	101824077	101824058	-	RAMPAGE_only	20	26	79	2.913618	5.117055	chr12	101824004	101824405	LTR|ERVL-MaLR|MLT1K	+	chr12	101767909	101830818	GNPTAB|ENST00000549940.5	-	101767909,101770020,101770405,101770995,101780151,101780556,101786011,101788547,101789937,101796676,101830558	101768160,101770191,101770585,101771157,101780286,101780621,101786217,101788589,101790057,101796762,101830818	0.835443
heart_male_adult_34_years	chr6	125828159	125828228	125828161	+	RAMPAGE_only	6	9	36	1.327724	4.653496	chr6	125827884	125828197	LINE|L2|L2a	-	chr6	125815217	125874968	NCOA7|ENST00000419660.1	+	125815217,125855019,125874888	125815404,125855240,125874968	0.666667
heart_male_adult_34_years	chr13	113187442	113187472	113187444	-	High_confidence	5	8	25	0.922031	3.882045	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.920000
heart_male_adult_34_years	chr6	2881285	2881286	2881285	-	High_confidence	48	48	48	1.770299	4.343633	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
heart_male_adult_34_years	chr10	65570509	65570522	65570519	+	High_confidence	18	26	62	2.286637	5.192712	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.612903
heart_male_adult_34_years	chr8	12522253	12522264	12522263	+	RAMPAGE_only	34	35	84	3.098024	4.407942	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12520685	12572302	STRG.53912.3	+	12520685,12530942,12565885	12522846,12531031,12572302	0.940476
heart_male_adult_34_years	chr5	148452873	148453032	148452873	+	High_confidence	26	26	160	5.900998	6.332458	chr5	148452775	148452912	LINE|L2|L2a	-	chr5	148452895	148554949	STRG.39811.1	+	148452895,148468919,148477376,148550084	148453172,148469017,148477538,148554949	0.743750
heart_male_adult_34_years	chr7	141280485	141280489	141280488	+	High_confidence	13	14	23	0.848268	4.061482	chr7	141280292	141280651	LTR|ERVL-MaLR|THE1B	+	chr7	141280386	141480380	STRG.52809.6	+	141280386,141437607,141470535	141280569,141437745,141480380	0.782609
heart_male_adult_34_years	chr8	18076060	18076061	18076060	-	High_confidence	78	85	98	3.614361	5.573325	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18056461	18076037	ASAH1|ENST00000637922.1	-	18056461,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18067219,18069791,18071299,18075540,18075922	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18064531,18067298,18069878,18071390,18075587,18076037	0.663265
heart_male_adult_34_years	chr4	47831113	47831123	47831113	+	High_confidence	6	7	18	0.663862	3.683542	chr4	47831064	47831545	LINE|RTE-BovB|MamRTE1	+	chr4	47831344	47896848	LOC101927179|NR_125881.1	+	47831344,47875205,47896541	47831508,47875331,47896848	0.666667
heart_male_adult_34_years	chr16	69838794	69838813	69838807	+	High_confidence	2	2	9	0.331931	2.500000	chr16	69838688	69838832	LINE|CR1|X7A_LINE	+	chr16	69838736	69941741	WWP2|NM_001270453.1	+	69838736,69840125,69842023,69871803,69888038,69908760,69917708,69925429,69929447,69930129,69931151,69931508,69931801,69933969,69935852,69936311,69937117,69937547,69939026,69939340,69939840	69838889,69840263,69842120,69871931,69888249,69908850,69917883,69925484,69929529,69930258,69931227,69931580,69931890,69934129,69935986,69936452,69937238,69937652,69939123,69939413,69941741	0.888889
heart_male_adult_34_years	chr3	129724091	129724117	129724116	-	RAMPAGE_only	6	7	17	0.626981	3.454822	chr3	129724100	129724190	LINE|CR1|L3	+	chr3	129647793	129694954	STRG.24619.14	-	129647793,129654967,129670329,129687721	129651795,129655103,129671264,129694954	0.764706
heart_male_adult_34_years	chr8	140270823	140270845	140270823	+	RAMPAGE_only	4	4	16	0.590100	3.625000	chr8	140270429	140270857	LINE|L2|L2c	-	chr8	140281814	140282429	STRG.58111.1	+	140281814	140282429	0.500000
heart_male_adult_34_years	chr5	116090633	116090665	116090633	+	High_confidence	4	5	12	0.442575	3.584963	chr5	116090420	116090755	DNA|TcMar-Tigger|Tigger15a	+	chr5	116091078	116292916	COMMD10|ENST00000506589.1	+	116091078,116092544,116291516,116292450	116091189,116092700,116291576,116292916	0.583333
heart_male_adult_34_years	chr1	31582600	31582601	31582600	+	High_confidence	4	6	6	0.221287	2.584963	chr1	31582337	31583033	LINE|L2|L2a	-	chr1	31583512	31587686	TINAGL1|ENST00000463112.1	+	31583512,31584885,31585439,31586709,31586838	31584801,31585340,31585876,31586755,31587686	0.500000
heart_male_adult_34_years	chr16	63618044	63618046	63618045	-	High_confidence	438	619	675	24.894834	6.713380	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63009033	63618046	STRG.91443.3	-	63009033,63067752,63090261,63119322,63130825,63131094,63301055,63334599,63531224,63617692	63028676,63067955,63090322,63119365,63130986,63299970,63305420,63334667,63531304,63618046	0.863704
heart_male_adult_34_years	chr12	45292684	45292722	45292685	+	High_confidence	181	264	789	29.099295	6.629417	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45421217	STRG.75153.6	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070	45292955,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421217	0.948035
heart_male_adult_34_years	chr14	31577923	31577942	31577923	+	High_confidence	5	5	17	0.626981	3.280639	chr14	31577911	31578038	LINE|L2|L2c	+	chr14	31577915	31861224	NUBPL|NM_001201573.1	+	31577915,31599288,31673354,31673483,31787779,31826628,31846470,31850118,31859117	31578025,31599379,31673394,31673574,31787873,31826714,31846591,31850201,31861224	0.823529
heart_male_adult_34_years	chr6	141404013	141404108	141404044	+	High_confidence	38	39	169	6.232929	3.850239	chr6	141403283	141405210	LTR|ERV1|LOR1-int	+	chr6	141403289	141451006	STRG.46797.3	+	141403289,141419256	141419228,141451006	1.000000
heart_male_adult_34_years	chr1	6003022	6003041	6003022	+	RAMPAGE_only	47	47	167	6.159166	6.552436	chr1	6003009	6003075	SINE|MIR|MIRc	-	chr1	5992362	6101193	KCNAB2|ENST00000378097.5	+	5992362,6040516,6041830,6072754,6073732,6082194,6085203,6087466,6089007,6090388,6094399,6095322,6095529,6096635,6097268,6098484	5992788,6040645,6041872,6072798,6073770,6082274,6085248,6087511,6089051,6090475,6094485,6095443,6095624,6096756,6097357,6101193	0.502994
heart_male_adult_34_years	chr13	32527410	32527432	32527431	-	RAMPAGE_only	4	4	10	0.368812	3.121928	chr13	32527156	32527383	SINE|MIR|MIRc	-	chr13	32516893	32525579	N4BP2L2|ENST00000503814.1	-	32516893,32521372	32518003,32525579	0.500000
heart_male_adult_34_years	chr11	112176365	112176373	112176372	+	High_confidence	420	768	1305	48.130013	6.527297	chr11	112176309	112176508	LINE|L2|L2c	-	chr11	112176370	112218135	BCO2|ENST00000526088.5	+	112176370,112179277,112193473,112193878,112194652,112199698,112200612,112202022,112213723,112214761,112216219,112217760	112176458,112179482,112193697,112193994,112194755,112199827,112200773,112202190,112213861,112214926,112216330,112218135	0.846743
heart_male_adult_34_years	chr5	66440352	66440389	66440388	-	High_confidence	1555	1806	7607	280.555560	6.851083	chr5	66440146	66440632	LTR|ERVL-MaLR|MLT1F1	+	chr5	66333588	66440498	STRG.36335.1	-	66333588,66356492,66377146	66356426,66376340,66440498	0.993953
heart_male_adult_34_years	chr8	144063388	144063498	144063432	-	High_confidence	34	36	250	9.220309	6.901279	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144053212	144063559	STRG.58271.3	-	144053212,144054560,144054811,144055028,144055787,144056146,144056384,144056617,144056947,144057207,144057447,144057855,144058009,144058238,144058495,144058772,144058979,144059598,144059861	144053393,144054735,144054913,144055189,144055939,144056259,144056523,144056755,144057118,144057320,144057713,144057923,144058148,144058404,144058691,144058896,144059079,144059790,144063559	1.000000
heart_male_adult_34_years	chr1	172162498	172162524	172162523	+	RAMPAGE_only	4	4	8	0.295050	2.500000	chr1	172162565	172162649	LINE|L1|L1ME4b	+	chr1	171841499	172408354	DNM3|ENST00000355305.9	+	171841499,171921747,171987655,171988944,172032401,172033104,172038318,172042008,172044384,172048611,172068818,172081831,172092823,172093695,172131174,172253572,172308727,172379017,172387132,172388572,172407771	171841817,171921821,171987805,171989148,172032500,172033265,172038461,172042144,172044452,172048750,172068905,172081902,172092875,172093725,172131288,172253682,172308839,172379182,172387359,172388809,172408354	0.500000
heart_male_adult_34_years	chr9	73449389	73449390	73449389	+	RAMPAGE_only	37	37	39	1.438368	4.445544	chr9	73449365	73449579	SINE|Alu|AluJb	-	chr9	73445640	73550514	STRG.60533.3	+	73445640,73465113	73465079,73550514	0.948718
heart_male_adult_34_years	chr2	191245143	191245164	191245143	+	High_confidence	2	2	7	0.258169	2.584963	chr2	191245108	191245343	LINE|L1|L1M4b	+	chr2	191245184	191346274	MYO1B|ENST00000418908.5	+	191245184,191276886,191296110,191329934,191341460,191346235	191245257,191277030,191296226,191330029,191341565,191346274	0.857143
heart_male_adult_34_years	chr6	34762037	34762052	34762037	+	RAMPAGE_only	6	6	13	0.479456	3.418296	chr6	34762020	34762316	SINE|Alu|AluJb	+	chr6	34757911	34773532	SNRPC|ENST00000474635.1	+	34757911,34762594,34767907,34770290,34772930,34773445	34757954,34762703,34767997,34770395,34773007,34773532	0.692308
heart_male_adult_34_years	chrX	26204787	26204816	26204801	-	RAMPAGE_only	3	3	10	0.368812	2.641604	chrX	26204620	26206065	LTR|ERV1|LTR12C	+	chrX	26094415	26152803	STRG.107759.1	-	26094415,26114970,26151512,26152669	26094491,26115052,26151583,26152803	0.800000
heart_male_adult_34_years	chrX	48590029	48590033	48590029	+	High_confidence	4	4	10	0.368812	2.947703	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48590041	48598827	WDR13|ENST00000470124.1	+	48590041,48597957,48598716	48590287,48598037,48598827	0.600000
heart_male_adult_34_years	chr10	6737312	6737373	6737338	+	High_confidence	10	16	87	3.208668	5.100781	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	1.000000
heart_male_adult_34_years	chr12	79873266	79873267	79873266	-	High_confidence	5	5	7	0.258169	2.521641	chr12	79873243	79873519	DNA|hAT-Charlie|Charlie1a	+	chr12	79828370	79872872	PPP1R12A|ENST00000548318.1	-	79828370,79832331,79845301,79848787,79872807	79828464,79832491,79845420,79848931,79872872	1.000000
heart_male_adult_34_years	chr22	50576075	50576078	50576075	-	High_confidence	3	3	7	0.258169	2.521641	chr22	50576043	50576136	LINE|RTE-BovB|MamRTE1	-	chr22	50572874	50576064	CPT1B|ENST00000423069.1	-	50572874,50573519,50573807,50574334,50574492,50576034	50573060,50573715,50573921,50574419,50574600,50576064	0.571429
heart_male_adult_34_years	chr4	128601406	128601415	128601406	-	High_confidence	29	29	44	1.622774	5.041011	chr4	128601303	128601662	LINE|RTE-BovB|MamRTE1	-	chr4	128600449	128601407	STRG.32326.1	-	128600449	128601407	0.727273
heart_male_adult_34_years	chr1	51297907	51297975	51297945	-	High_confidence	9	14	53	1.954705	4.952082	chr1	51297625	51298239	LINE|L2|L2a	+	chr1	51287985	51297960	TTC39A|ENST00000534098.1	-	51287985,51288838,51290004,51290513,51294390,51297790	51288280,51288955,51290119,51290625,51294511,51297960	0.641509
heart_male_adult_34_years	chr7	158859026	158859065	158859026	+	RAMPAGE_only	5	5	18	0.663862	3.836592	chr7	158858991	158859159	SINE|Alu|AluJb	-	chr7	158856577	158946192	WDR60|NM_018051.4	+	158856577,158869854,158871141,158876608,158879683,158884563,158887020,158891264,158901738,158902375,158905988,158911549,158912984,158914232,158918739,158922376,158923570,158926186,158926401,158926991,158930454,158934128,158934417,158941924,158945580	158856750,158869908,158871562,158876691,158879989,158884619,158887075,158891333,158901816,158902595,158906091,158911679,158913096,158914321,158918869,158922549,158923733,158926300,158926463,158927043,158930515,158934228,158934549,158942148,158946192	1.000000
heart_male_adult_34_years	chr1	153637550	153637551	153637550	+	High_confidence	158	158	178	6.564860	6.679908	chr1	153637372	153637665	SINE|Alu|AluSg	+	chr1	153638083	153645470	CHTOP|ENST00000368687.1	+	153638083,153642245,153643226,153645063	153638448,153642429,153643364,153645470	0.825843
heart_male_adult_34_years	chr10	125883336	125883337	125883336	-	RAMPAGE_only	9	9	10	0.368812	2.503258	chr10	125883253	125883719	LTR|ERVL-MaLR|MLT1H1	+	chr10	125836339	125881315	DHX32|NM_018180.2	-	125836339,125838205,125839000,125840846,125841742,125852292,125852542,125853960,125859602,125866989,125880542	125836855,125838387,125839188,125840996,125841934,125852451,125852642,125854203,125859975,125867183,125881315	0.900000
heart_male_adult_34_years	chr19	41545191	41545192	41545191	+	RAMPAGE_only	45	46	47	1.733418	4.751610	chr19	41544577	41545607	LTR|ERVK|LTR5A	+	chr19	41549526	41550705	STRG.100517.2	+	41549526	41550705	0.638298
heart_male_adult_34_years	chr7	107580552	107580553	107580552	+	High_confidence	10	10	11	0.405694	3.121928	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.909091
heart_male_adult_34_years	chr12	104858837	104858853	104858837	+	High_confidence	226	237	342	12.613383	5.946963	chr12	104858784	104858889	DNA|TcMar-Tigger|UCON55	+	chr12	104858837	104871612	STRG.77677.1	+	104858837,104870161	104858907,104871612	0.973684
heart_male_adult_34_years	chr12	106305064	106305068	106305067	+	RAMPAGE_only	5	6	10	0.368812	2.947703	chr12	106305078	106305341	SINE|MIR|MIR	+	chr12	106303059	106318445	TCP11L2|ENST00000551802.5	+	106303059,106311040,106314357,106318343	106303254,106311232,106314493,106318445	0.500000
heart_male_adult_34_years	chr3	13083014	13083018	13083014	-	High_confidence	5	5	9	0.331931	2.500000	chr3	13082634	13083190	LINE|L2|L2b	+	chr3	13081748	13082673	STRG.20204.1	-	13081748	13082673	0.666667
heart_male_adult_34_years	chr1	212234683	212234725	212234693	-	High_confidence	12	13	47	1.733418	4.754442	chr1	212234586	212234675	DNA|hAT-Charlie|Charlie24	-	chr1	212225277	212234736	LOC101929541|NR_125983.1	-	212225277,212230202,212234502	212225513,212230259,212234736	0.872340
heart_male_adult_34_years	chr4	116344039	116344043	116344039	+	High_confidence	10	10	16	0.590100	3.750000	chr4	116343893	116344146	SINE|Alu|AluSz6	-	chr4	116344048	116355320	STRG.31649.1	+	116344048,116352976,116353879	116344137,116353055,116355320	1.000000
heart_male_adult_34_years	chr12	9170106	9170109	9170106	-	High_confidence	6	6	14	0.516337	3.238901	chr12	9170008	9176475	LINE|L1|L1PA11	+	chr12	9168455	9170118	PZP|ENST00000546116.1	-	9168455,9169429,9170048	9168974,9169591,9170118	0.785714
heart_male_adult_34_years	chr14	106846262	106846302	106846262	-	High_confidence	30	30	74	2.729211	5.320610	chr14	106845982	106849095	LINE|L1|L1PBb	-	chr14	106802693	106846255	STRG.85578.2	-	106802693,106803107,106845802	106803004,106810746,106846255	1.000000
heart_male_adult_34_years	chr13	113485593	113485624	113485593	-	RAMPAGE_only	69	72	153	5.642829	6.044895	chr13	113485255	113485582	LINE|RTE-X|L4_B_Mam	-	chr13	113474196	113484190	DCUN1D2|ENST00000465938.5	-	113474196,113480574,113483839	113474254,113480743,113484190	0.738562
heart_male_adult_34_years	chr11	67884427	67884438	67884427	+	High_confidence	42	42	92	3.393074	5.139908	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67884420	67894055	STRG.70013.1	+	67884420,67888152,67893878	67884478,67888324,67894055	0.608696
heart_male_adult_34_years	chr4	69525984	69526017	69526016	-	High_confidence	37	39	144	5.310898	5.493132	chr4	69525819	69526138	SINE|Alu|AluY	+	chr4	69489477	69526014	STRG.29874.6	-	69489477,69493692,69495140,69523349	69489570,69493841,69495966,69526014	0.937500
heart_male_adult_34_years	chr9	39810023	39810084	39810033	-	High_confidence	159	159	334	12.318333	6.139753	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803265	39810013	STRG.59837.2	-	39803265,39809485,39809730	39803859,39809615,39810013	0.973054
heart_male_adult_34_years	chr15	50766688	50766716	50766700	-	High_confidence	5	6	21	0.774506	3.932138	chr15	50766525	50766821	LINE|L2|L2a	+	chr15	50702265	50765808	SPPL2A|ENST00000261854.9	-	50702265,50719939,50722123,50725220,50726320,50730964,50732602,50736100,50736643,50739679,50747494,50748112,50748687,50749635,50765467	50707874,50720100,50722201,50725323,50726377,50731039,50732684,50736202,50736740,50739828,50747628,50748202,50748870,50749746,50765808	0.714286
heart_male_adult_34_years	chrX	5726355	5726387	5726355	-	High_confidence	5	5	11	0.405694	2.846439	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5717913	5726338	STRG.106982.1	-	5717913,5725929	5719872,5726338	0.818182
heart_male_adult_34_years	chr3	192567000	192567062	192567058	+	High_confidence	11	11	59	2.175993	5.314681	chr3	192566991	192567105	SINE|MIR|MIRc	-	chr3	192566973	192606346	STRG.27341.1	+	192566973,192567514,192604438	192567171,192567624,192606346	0.593220
heart_male_adult_34_years	chr5	31422350	31422365	31422358	-	High_confidence	20	21	65	2.397280	5.412989	chr5	31422347	31422540	DNA|hAT-Charlie|MER58A	+	chr5	31401411	31423321	DROSHA|ENST00000511778.5	-	31401411,31405676,31406852,31409055,31409249,31410745,31421271,31422786	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31423321	0.830769
heart_male_adult_34_years	chr8	39017063	39017078	39017077	+	High_confidence	30	30	50	1.844062	4.693905	chr8	39016988	39017120	SINE|MIR|MIRb	-	chr8	39017035	39021713	ADAM9|ENST00000481058.1	+	39017035,39018852,39021642	39017414,39018918,39021713	0.660000
heart_male_adult_34_years	chr17	15475732	15475733	15475732	-	High_confidence	11	12	14	0.516337	3.392747	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15437858	15475728	CDRT4|ENST00000520956.2	-	15437858,15475600	15438200,15475728	0.642857
heart_male_adult_34_years	chr1	234980754	234980791	234980754	-	High_confidence	2	3	10	0.368812	2.721928	chr1	234980615	234980877	SINE|5S-Deu-L2|AmnSINE1	-	chr1	234977847	234980536	STRG.9421.1	-	234977847	234980536	0.600000
heart_male_adult_34_years	chr6	110283774	110283775	110283774	-	High_confidence	59	66	84	3.098024	4.951918	chr6	110283717	110284382	LINE|L1|L1MB2	+	chr6	110233451	110283760	STRG.45105.3	-	110233451,110283567	110246260,110283760	0.833333
heart_male_adult_34_years	chr1	94287377	94287378	94287377	+	High_confidence	9	9	9	0.331931	3.169925	chr1	94287201	94287494	LTR|ERVL-MaLR|THE1D	+	chr1	94287344	94334664	STRG.4527.1	+	94287344,94333308,94334511	94287473,94333409,94334664	0.888889
heart_male_adult_34_years	chr4	47831172	47831190	47831189	+	High_confidence	4	4	8	0.295050	2.521641	chr4	47831064	47831545	LINE|RTE-BovB|MamRTE1	+	chr4	47831344	47896848	LOC101927179|NR_125881.1	+	47831344,47875205,47896541	47831508,47875331,47896848	0.625000
heart_male_adult_34_years	chr1	212233406	212233449	212233406	-	RAMPAGE_only	49	50	146	5.384660	5.491071	chr1	212233221	212233468	LINE|CR1|L3b	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	0.890411
heart_male_adult_34_years	chr3	120719602	120719616	120719602	-	RAMPAGE_only	4	4	8	0.295050	2.521641	chr3	120719120	120721943	LINE|L1|L1PA4	+	chr3	120694152	120710546	RABL3|ENST00000468192.1	-	120694152,120698422,120705999,120709779,120710342	120694224,120698573,120706114,120709909,120710546	0.625000
heart_male_adult_34_years	chr12	8663176	8663193	8663176	-	High_confidence	3	6	10	0.368812	2.947703	chr12	8663102	8663238	SINE|Alu|AluSq2	-	chr12	8645942	8662888	MFAP5|NM_001297710.1	-	8645942,8649500,8650501,8654436,8655414,8655785,8662046,8662626	8648203,8649574,8650589,8654481,8655447,8655830,8662106,8662888	0.600000
heart_male_adult_34_years	chr22	49657346	49657356	49657346	-	High_confidence	4	4	13	0.479456	3.238901	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.846154
heart_male_adult_34_years	chr15	36603012	36603018	36603012	+	RAMPAGE_only	5	5	10	0.368812	2.503258	chr15	36602996	36603033	DNA|TcMar-Mariner|MARNA	-	chr15	36594899	36808453	C15orf41|ENST00000562877.5	+	36594899,36644277,36645222,36654097,36657832,36691684,36692125,36697322,36709222,36709855,36808323	36594918,36644323,36645287,36654158,36657905,36691764,36692175,36697390,36709288,36709961,36808453	0.800000
heart_male_adult_34_years	chr22	35611961	35611962	35611961	-	RAMPAGE_only	9	9	14	0.516337	3.026987	chr22	35611957	35612110	SINE|MIR|MIRb	-	chr22	35606763	35615713	MB|ENST00000401702.5	-	35606763,35610883,35615573	35607443,35611106,35615713	0.928571
heart_male_adult_34_years	chr8	99893268	99893297	99893290	-	High_confidence	11	11	37	1.364606	4.114718	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.945946
heart_male_adult_34_years	chr4	65024276	65024333	65024283	-	High_confidence	5	5	26	0.958912	3.642371	chr4	65024156	65024597	LTR|ERVL-MaLR|MSTB1	-	chr4	65023839	65024113	STRG.29835.1	-	65023839	65024113	0.538462
heart_male_adult_34_years	chr17	75833295	75833330	75833318	-	RAMPAGE_only	5	5	23	0.848268	3.914866	chr17	75833179	75833712	LINE|L2|L2a	+	chr17	75827263	75844350	UNC13D|ENST00000412096.6	-	75827263,75827997,75828786,75830027,75830361,75830577,75831097,75831242,75832965,75834074,75834324,75834617,75834919,75835408,75835646,75835854,75836011,75836199,75836338,75836571,75836800,75839838,75840017,75840224,75840506,75840761,75840956,75842432,75842856,75843013,75843158,75843483,75844220	75827658,75828086,75828983,75830151,75830482,75830661,75831169,75831348,75833045,75834143,75834531,75834716,75835063,75835529,75835777,75835906,75836109,75836256,75836429,75836696,75836918,75839942,75840110,75840329,75840576,75840830,75841001,75842613,75842923,75843073,75843266,75843519,75844350	0.652174
heart_male_adult_34_years	chr12	120495908	120495946	120495945	-	High_confidence	23	26	70	2.581686	5.239788	chr12	120495927	120495980	LTR|ERV1|LTR71B	+	chr12	120490337	120495946	NRAV|NR_038854.1	-	120490337,120495822	120492110,120495946	1.000000
heart_male_adult_34_years	chr14	44912470	44912509	44912495	-	High_confidence	3	3	15	0.553219	3.235926	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.733333
heart_male_adult_34_years	chr17	77127869	77127877	77127872	+	High_confidence	60	64	144	5.310898	6.200838	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.756944
heart_male_adult_34_years	chr10	45000453	45000504	45000503	+	High_confidence	9	9	29	1.069556	4.418157	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
heart_male_adult_34_years	chr2	27716770	27716804	27716803	+	High_confidence	95	99	166	6.122285	5.372839	chr2	27716767	27716980	SINE|MIR|MIR	-	chr2	27716248	27742669	STRG.11034.1	+	27716248,27716846,27727616,27738272	27716732,27717018,27727685,27742669	0.698795
heart_male_adult_34_years	chrX	122422803	122422804	122422803	+	High_confidence	19	19	23	0.848268	3.820889	chrX	122422686	122426743	LINE|L1|L1PBa	-	chrX	122421971	122479785	STRG.110444.2	+	122421971,122435814,122477001	122422061,122459580,122479785	0.695652
heart_male_adult_34_years	chr9	38650188	38650222	38650221	+	High_confidence	554	595	2291	84.494911	6.173373	chr9	38650217	38650807	LINE|L2|L2b	-	chr9	38650256	38662717	AL591543.1|ENST00000642095.1	+	38650256,38658688	38650376,38662717	0.889131
heart_male_adult_34_years	chr4	69526069	69526082	69526069	-	High_confidence	4	4	10	0.368812	2.947703	chr4	69525819	69526138	SINE|Alu|AluY	+	chr4	69489477	69526014	STRG.29874.6	-	69489477,69493692,69495140,69523349	69489570,69493841,69495966,69526014	0.900000
heart_male_adult_34_years	chrX	33083451	33083452	33083451	-	RAMPAGE_only	7	8	11	0.405694	3.121928	chrX	33081588	33084276	LTR|ERV1|HUERS-P1-int	-	chrX	31119227	33128165	DMD|ENST00000619831.4	-	31119227,31126641,31134101,31146290,31147274,31169442,31172347,31173538,31177931,31178668,31180369,31182737,31203960,31206581,31209497,31223046,31260954,31323597,31348555,31444480,31478105,31478982,31496787,31507280,31627672,31657989,31679374,31729630,31773959,31819974,31836717,31875187,31929595,31932079,31968338,32151389,32216888,32216906,32287528,32310081,32342099,32343133,32345942,32348405,32362787,32364581,32365019,32380509,32386309,32389500,32390070,32411751,32438240,32441179,32448455,32454661,32463438,32464585,32468497,32472163,32484918,32491276,32501754,32518007,32545158,32565701,32573529,32573744,32595756,32614302,32644131,32644963,32697869,32699111,32809492,32816467,32823294,32844782,32849727,33020138,33128146	31121930,31126673,31134194,31146414,31147518,31169601,31172413,31173604,31177970,31178805,31180481,31182904,31204118,31206667,31209699,31223121,31261016,31323658,31348634,31444627,31478374,31479103,31496944,31507453,31627862,31658144,31679586,31729748,31774192,31820083,31836819,31875373,31929745,31932227,31968450,32151426,32216903,32217063,32287701,32310276,32342282,32343286,32346080,32348528,32362958,32364710,32365199,32380680,32386465,32389674,32390181,32411913,32438390,32441314,32448638,32454832,32463594,32464699,32468710,32472309,32485099,32491518,32501842,32518131,32545334,32565881,32573637,32573846,32595876,32614453,32644313,32645152,32697998,32699293,32809611,32816640,32823387,32844860,32849820,33020200,33128165	0.818182
heart_male_adult_34_years	chr10	75035060	75035135	75035134	-	High_confidence	20	20	81	2.987380	5.369119	chr10	75034752	75035372	LINE|L2|L2b	+	chr10	75032414	75035132	STRG.65622.1	-	75032414	75035132	0.962963
heart_male_adult_34_years	chr1	84797343	84797379	84797378	-	High_confidence	6	6	13	0.479456	3.584963	chr1	84797239	84797693	LTR|ERVL-MaLR|MLT1C	-	chr1	84779024	84797784	STRG.3959.1	-	84779024,84785147,84796264,84797230,84797714	84782877,84785309,84796513,84797601,84797784	0.769231
heart_male_adult_34_years	chr16	5003069	5003109	5003108	+	High_confidence	17	20	64	2.360399	4.804672	chr16	5003026	5003140	SINE|MIR|MIR	-	chr16	5003004	5019911	STRG.89877.2	+	5003004,5005913,5007351,5008420,5011094,5014858	5003573,5006048,5007486,5008648,5011273,5019911	0.984375
heart_male_adult_34_years	chr18	976677	976714	976713	+	High_confidence	5	5	23	0.848268	3.788755	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976696	1159311	AP005328.1|ENST00000579835.5	+	976696,1061462,1133842,1137813,1159178	976895,1061535,1133894,1137864,1159311	0.608696
heart_male_adult_34_years	chrX	153706692	153706693	153706692	-	RAMPAGE_only	8	10	12	0.442575	3.418296	chrX	153706614	153706715	LINE|L2|L2c	+	chrX	153700502	153705456	BCAP31|ENST00000646514.1	-	153700502,153702006,153702934,153703958,153704820,153705354	153700975,153702107,153703058,153704094,153705101,153705456	1.000000
heart_male_adult_34_years	chr10	47743693	47743695	47743693	+	High_confidence	4	9	11	0.405694	2.921928	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.545455
heart_male_adult_34_years	chr9	105458156	105458216	105458215	+	RAMPAGE_only	6	6	19	0.700743	3.681881	chr9	105457577	105458817	LTR|ERV1|LTR2752	-	chr9	105461410	105481338	STRG.61625.8	+	105461410,105464235,105468192,105471903	105461615,105464331,105468324,105481338	0.789474
heart_male_adult_34_years	chr22	35623191	35623192	35623191	-	High_confidence	8	8	8	0.295050	2.750000	chr22	35623096	35623262	SINE|MIR|MIR	-	chr22	35606763	35623354	MB|ENST00000359787.5	-	35606763,35610883,35617162,35623190	35607443,35611106,35617265,35623354	1.000000
heart_male_adult_34_years	chr6	123439083	123439117	123439083	-	RAMPAGE_only	9	9	28	1.032675	4.253434	chr6	123439047	123439232	SINE|MIR|MIRb	+	chr6	123216338	123636909	STRG.46007.1	-	123216338,123221486,123224092,123252411,123255080,123255866,123259623,123260611,123265317,123267706,123269848,123271138,123272963,123273336,123274640,123278317,123279055,123316456,123331878,123337618,123352538,123366134,123375604,123377715,123377865,123381369,123382117,123388521,123393623,123438062,123438943,123464905,123497192,123498448,123499815,123512302,123516140,123530505,123547339,123548453,123570922,123636753	123218740,123221522,123224131,123252435,123255125,123255902,123259662,123260638,123265338,123267751,123269866,123271186,123273011,123273363,123274670,123278347,123279082,123316495,123331929,123337669,123352586,123366182,123375631,123377742,123377898,123381390,123382147,123388551,123393677,123438122,123439003,123464983,123497252,123499545,123503901,123512362,123516206,123530565,123547372,123548612,123571132,123636909	0.964286
heart_male_adult_34_years	chr10	114698843	114698849	114698843	-	RAMPAGE_only	5	5	11	0.405694	3.321928	chr10	114698749	114699028	LINE|L1|HAL1	+	chr10	114435953	114685003	ABLIM1|ENST00000369256.6	-	114435953,114437843,114439175,114440081,114441016,114441721,114444028,114445311,114447879,114451623,114453378,114465697,114468180,114472976,114473878,114485296,114487957,114491790,114545004,114547649,114571296,114575415,114601826,114684289	114436373,114437924,114439250,114440089,114441077,114441786,114444134,114445403,114448026,114451671,114453483,114465827,114468216,114473132,114473956,114485380,114488016,114491878,114545098,114547776,114571406,114575599,114601961,114685003	0.727273
heart_male_adult_34_years	chr9	109428971	109429046	109429042	-	High_confidence	71	77	271	9.994815	5.934688	chr9	109429018	109429111	SINE|MIR|MIRb	+	chr9	109375693	109429043	PTPN3|NM_001145371.1	-	109375693,109381651,109382301,109383422,109389232,109391137,109391470,109404447,109406461,109408320,109409998,109410228,109420423,109422717,109426949,109428620	109379633,109381787,109382447,109383551,109389379,109391199,109391561,109404608,109406618,109408377,109410076,109410415,109420600,109422852,109427122,109429043	0.981550
heart_male_adult_34_years	chr11	104071973	104071983	104071973	+	High_confidence	8	8	22	0.811387	3.630413	chr11	104071810	104072810	LINE|L1|L1MC4	-	chr11	104071829	104092982	STRG.71699.1	+	104071829,104084011,104085348,104092370	104072232,104084205,104085425,104092982	0.818182
heart_male_adult_34_years	chr3	98733009	98733011	98733009	+	High_confidence	4	6	9	0.331931	3.000000	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.666667
heart_male_adult_34_years	chr15	70942658	70942697	70942660	+	RAMPAGE_only	7	10	21	0.774506	4.011365	chr15	70942582	70942814	LTR|ERV1|MER4E1	-	chr15	70936615	71008617	LRRC49|ENST00000559685.5	+	70936615,70963784,70984093,71008378	70936822,70963932,70984257,71008617	0.523810
heart_male_adult_34_years	chr6	122127175	122127176	122127175	+	High_confidence	675	684	931	34.336430	7.662704	chr6	122126885	122128053	LINE|L2|L2	-	chr6	122127075	122131399	STRG.45743.2	+	122127075	122131399	0.972073
heart_male_adult_34_years	chr22	11827522	11827537	11827522	+	RAMPAGE_only	8	8	18	0.663862	3.947703	chr22	11827143	11828778	LINE|L1|L1PB	-	chr22	11859796	11916634	STRG.105363.2	+	11859796,11867114,11869053,11869828,11872162,11873843,11876103,11886400,11887951,11891781,11902860,11903786,11905336,11910165	11859927,11867145,11869125,11869898,11872358,11873925,11882338,11886565,11890230,11891931,11903142,11904000,11905557,11916634	0.500000
heart_male_adult_34_years	chr17	43872496	43872512	43872511	+	High_confidence	9	10	27	0.995793	3.754163	chr17	43872527	43872727	LTR|ERVK|HERVK3-int	+	chr17	43872667	43872944	STRG.94463.1	+	43872667	43872944	0.888889
heart_male_adult_34_years	chr15	34988764	34988768	34988767	-	High_confidence	14	19	45	1.659656	4.693479	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.866667
heart_male_adult_34_years	chr1	156752094	156752121	156752112	-	High_confidence	5	5	12	0.442575	3.095795	chr1	156752098	156752165	LINE|L2|L2c	-	chr1	156742106	156752232	HDGF|NM_001126051.1	-	156742106,156743651,156744162,156745007,156745296,156752037	156743455,156743878,156744348,156745146,156745373,156752232	0.916667
heart_male_adult_34_years	chr5	96934326	96934354	96934326	+	RAMPAGE_only	8	8	38	1.401487	4.523986	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.973684
heart_male_adult_34_years	chr10	32038878	32038916	32038915	-	RAMPAGE_only	5	5	16	0.590100	3.640224	chr10	32038882	32038983	LINE|L2|L2a	-	chr10	32009009	32056431	KIF5B|ENST00000302418.4	-	32009009,32015508,32017142,32018051,32018315,32018501,32019857,32021021,32021225,32022139,32022847,32028427,32031072,32032705,32033844,32034689,32035521,32035889,32037253,32037519,32038162,32038777,32039326,32040383,32048463,32055847	32011516,32015659,32017359,32018156,32018387,32018562,32019959,32021131,32021287,32022257,32023036,32028571,32031279,32032774,32034038,32034838,32035667,32035994,32037378,32037607,32038218,32038826,32039431,32040457,32048551,32056431	0.937500
heart_male_adult_34_years	chr8	12522741	12522814	12522775	+	RAMPAGE_only	5	5	32	1.180200	3.750807	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12520685	12572302	STRG.53912.3	+	12520685,12530942,12565885	12522846,12531031,12572302	0.968750
heart_male_adult_34_years	chr5	73863039	73863043	73863042	+	High_confidence	8	8	15	0.553219	3.323231	chr5	73862617	73863453	LINE|L1|L1M6	-	chr5	73863042	73942156	STRG.36477.1	+	73863042,73864816,73865964,73867875,73868099,73870068,73872998,73882471,73883766,73885849,73887602,73892051,73893196,73894392,73897961,73901183,73904221,73904357,73909411,73911274,73923086,73940843	73863357,73864872,73866013,73868020,73868227,73870209,73873246,73882594,73883884,73886104,73887679,73892230,73893288,73894575,73898093,73901284,73904260,73904405,73909897,73911575,73923164,73942156	1.000000
heart_male_adult_34_years	chr19	49331719	49331754	49331719	-	RAMPAGE_only	2	3	8	0.295050	2.750000	chr19	49331652	49331864	LTR|ERVL-MaLR|MLT1J2	-	chr19	49289637	49325225	SLC6A16|ENST00000335875.8	-	49289637,49290604,49293222,49293826,49294366,49308875,49309300,49309650,49310039,49310352,49310932,49325047	49290392,49290767,49293382,49294028,49294553,49309117,49309411,49309826,49310166,49310510,49311411,49325225	0.500000
heart_male_adult_34_years	chr7	141280374	141280422	141280421	+	High_confidence	11	11	67	2.471043	5.315870	chr7	141280292	141280651	LTR|ERVL-MaLR|THE1B	+	chr7	141280386	141480380	STRG.52809.6	+	141280386,141437607,141470535	141280569,141437745,141480380	0.776119
heart_male_adult_34_years	chr5	172958855	172958919	172958912	+	High_confidence	9	9	48	1.770299	4.392266	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.979167
heart_male_adult_34_years	chrX	11351736	11351743	11351742	-	RAMPAGE_only	13	14	21	0.774506	3.916127	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11137543	11354282	STRG.107164.3	-	11137543,11142232,11143979,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11351385	11139530,11142313,11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11354282	0.714286
heart_male_adult_34_years	chr9	127876019	127876026	127876019	-	RAMPAGE_only	3	3	8	0.295050	2.750000	chr9	127875960	127876265	LINE|L2|L2c	+	chr9	127867998	127875007	AK1|ENST00000373156.5	-	127867998,127868320,127871822,127872689,127873025,127874610,127874876	127868076,127868512,127871939,127872853,127873061,127874649,127875007	1.000000
heart_male_adult_34_years	chr15	50767903	50767904	50767903	+	High_confidence	7	7	10	0.368812	2.947703	chr15	50767638	50768178	LINE|L2|L2c	-	chr15	50767784	50771326	STRG.86856.1	+	50767784	50771326	0.900000
heart_male_adult_34_years	chr10	32412647	32412648	32412647	+	RAMPAGE_only	19	19	26	0.958912	3.536414	chr10	32412401	32412749	LINE|CR1|L3	+	chr10	32446081	32574564	CCDC7|NM_001026383.2	+	32446081,32451591,32453343,32456250,32462682,32463016,32471063,32472480,32473966,32491921,32517944,32518415,32543299,32544246,32565557,32567669,32571858,32574428	32446397,32451921,32453436,32456334,32462703,32463049,32471230,32472542,32474023,32491997,32517975,32518505,32543385,32544301,32565620,32567891,32571893,32574564	0.961538
heart_male_adult_34_years	chr15	57602713	57602714	57602713	+	RAMPAGE_only	22	22	30	1.106437	4.582119	chr15	57602679	57602910	SINE|MIR|MIR	+	chr15	57599410	57625809	MYZAP|ENST00000569089.1	+	57599410,57599618,57604268,57618032,57621607,57625778	57599525,57599703,57604355,57618188,57621700,57625809	0.766667
heart_male_adult_34_years	chr2	219420996	219421031	219420996	+	High_confidence	2	2	12	0.442575	3.418296	chr2	219420988	219421091	SINE|MIR|MIRc	+	chr2	219420121	219423843	DES|ENST00000492726.1	+	219420121,219420250,219420494,219420827,219421339,219423776	219420155,219420346,219420656,219420953,219421560,219423843	0.583333
heart_male_adult_34_years	chr5	148452788	148452799	148452788	+	High_confidence	2	2	6	0.221287	2.584963	chr5	148452775	148452912	LINE|L2|L2a	-	chr5	148452895	148554949	STRG.39811.1	+	148452895,148468919,148477376,148550084	148453172,148469017,148477538,148554949	0.666667
heart_male_adult_34_years	chr4	11336762	11336783	11336775	+	RAMPAGE_only	22	23	69	2.544805	4.206533	chr4	11336585	11336947	LTR|ERVL-MaLR|MLT1O	+	chr4	11347089	11350140	STRG.28061.1	+	11347089	11350140	0.507246
heart_male_adult_34_years	chr22	24467220	24467238	24467222	+	High_confidence	29	35	80	2.950499	5.212292	chr22	24467213	24467377	SINE|MIR|MIR3	+	chr22	24467220	24467992	STRG.105771.1	+	24467220	24467992	0.537500
heart_male_adult_34_years	chr2	217909716	217909737	217909736	-	RAMPAGE_only	26	26	57	2.102230	4.661269	chr2	217909603	217909688	DNA|hAT-Charlie|MER5A	-	chr2	217848883	217905461	TNS1|ENST00000413554.5	-	217848883,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217905295	217849087,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217905461	0.964912
heart_male_adult_34_years	chr17	82670253	82670254	82670253	-	RAMPAGE_only	10	10	14	0.516337	2.661226	chr17	82670178	82670484	SINE|Alu|AluSz6	-	chr17	82657792	82664895	RAB40B|ENST00000570676.1	-	82657792,82658490,82659579,82660986,82664495	82658134,82658713,82659657,82661047,82664895	0.571429
heart_male_adult_34_years	chr18	8376199	8376200	8376199	+	RAMPAGE_only	7	7	11	0.405694	3.277613	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8370932	8379313	PTPRM|ENST00000583153.2	+	8370932,8371759,8376045,8376461,8378264,8379166	8371006,8371810,8376200,8376597,8378414,8379313	1.000000
heart_male_adult_34_years	chr1	52708380	52708388	52708380	-	RAMPAGE_only	4	4	14	0.516337	3.238901	chr1	52708320	52708479	LINE|L2|L2c	+	chr1	52684450	52698366	COA7|ENST00000371538.4	-	52684450,52692726,52698220	52688168,52692867,52698366	0.857143
heart_male_adult_34_years	chr2	228378128	228378191	228378130	+	High_confidence	9	13	42	1.549012	4.290778	chr2	228377948	228378523	LTR|ERVL-MaLR|MLT1E3	+	chr2	228378108	228409406	STRG.18917.2	+	228378108,228406975	228378863,228409406	0.976190
heart_male_adult_34_years	chr5	92329112	92329134	92329112	+	High_confidence	3	3	11	0.405694	3.277613	chr5	92329090	92329219	LINE|L2|L2a	-	chr5	92329229	92332584	AC114316.1|ENST00000511323.1	+	92329229,92332448	92329371,92332584	0.818182
heart_male_adult_34_years	chr11	19209846	19209864	19209863	+	High_confidence	44	49	154	5.679710	6.506946	chr11	19209477	19210094	LINE|L2|L2c	+	chr11	19209853	19308358	STRG.68650.1	+	19209853,19252244,19281249,19291862,19308189	19209925,19252291,19281450,19301244,19308358	0.733766
heart_male_adult_34_years	chr11	64242588	64242620	64242619	+	High_confidence	97	100	442	16.301506	6.244974	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.997738
heart_male_adult_34_years	chr13	37935018	37935028	37935018	-	High_confidence	3	4	8	0.295050	2.807355	chr13	37934381	37935273	LTR|ERV1|LTR1D	-	chr13	37933630	37935016	STRG.79029.1	-	37933630	37935016	0.625000
heart_male_adult_34_years	chr14	102083177	102083178	102083177	-	RAMPAGE_only	7	7	9	0.331931	2.725481	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	1.000000
heart_male_adult_34_years	chr14	35294421	35294446	35294445	+	RAMPAGE_only	8	8	28	1.032675	4.356558	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	0.750000
heart_male_adult_34_years	chr12	56157332	56157352	56157351	+	High_confidence	5	5	22	0.811387	3.390805	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.818182
heart_male_adult_34_years	chr22	37508811	37508814	37508813	-	High_confidence	6	8	12	0.442575	3.095795	chr22	37508777	37508913	SINE|MIR|MIRc	+	chr22	37490363	37509149	CARD10|ENST00000406271.7	-	37490363,37491754,37492434,37492643,37494085,37495516,37495759,37496448,37497018,37502601,37503184,37504185,37504634,37506191,37507828,37508526,37509007	37491393,37491867,37492550,37492802,37494188,37495586,37496003,37496560,37497178,37502725,37503213,37504301,37504769,37506383,37507954,37508682,37509149	0.666667
heart_male_adult_34_years	chr4	87503011	87503034	87503031	-	RAMPAGE_only	3	4	13	0.479456	3.251629	chr4	87502566	87503540	LINE|L1|HAL1	-	chr4	87494416	87528619	SPARCL1|ENST00000535835.5	-	87494416,87494980,87499520,87504821,87528554	87494598,87495127,87499585,87504923,87528619	0.692308
heart_male_adult_34_years	chr9	68975842	68975846	68975842	-	High_confidence	5112	5345	8519	314.191247	6.097707	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.803733
heart_male_adult_34_years	chr19	48868595	48868631	48868613	-	High_confidence	2217	2626	11063	408.017110	7.715857	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.982735
heart_male_adult_34_years	chr5	128082243	128082265	128082243	-	High_confidence	5	5	15	0.553219	3.378783	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	128024026	128082960	LINC01184|ENST00000508878.5	-	128024026,128061143,128076946,128081972,128082734	128024298,128061244,128077093,128082194,128082960	0.800000
heart_male_adult_34_years	chr2	105494767	105494770	105494769	-	High_confidence	7	12	12	0.442575	3.251629	chr2	105494128	105494972	LTR|ERV1|LTR1A2	-	chr2	105493978	105494896	STRG.14591.1	-	105493978	105494896	0.750000
heart_male_adult_34_years	chr2	205375646	205375684	205375646	+	RAMPAGE_only	2	2	10	0.368812	3.121928	chr2	205375356	205375661	LINE|L2|L2	-	chr2	205347808	205440471	PARD3B|ENST00000494482.1	+	205347808,205401012,205440369	205348171,205401123,205440471	0.600000
heart_male_adult_34_years	chr7	102822449	102822459	102822458	-	RAMPAGE_only	21	25	44	1.622774	4.735362	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102688150	102703515	STRG.51566.1	-	102688150,102688903,102689616,102689959,102703314	102688364,102689048,102689754,102690469,102703515	0.545455
heart_male_adult_34_years	chr2	156787712	156787774	156787773	+	High_confidence	19	19	117	4.315105	6.101874	chr2	156787591	156787841	DNA|hAT|MamRep38	-	chr2	156787731	156868154	STRG.15935.2	+	156787731,156837874,156840160,156864122	156787938,156840116,156841588,156868154	0.589744
heart_male_adult_34_years	chr4	62133955	62134019	62133990	+	High_confidence	6	7	26	0.958912	3.790767	chr4	62133506	62134415	LTR|ERVL|MER21A	+	chr4	62133723	62271469	STRG.29824.1	+	62133723,62137736,62161758,62173782,62220330,62246914	62134051,62137823,62173706,62193219,62246779,62271469	0.538462
heart_male_adult_34_years	chr10	72176849	72176900	72176854	-	RAMPAGE_only	20	21	78	2.876736	5.562780	chr10	72176827	72177143	LINE|L2|L2c	+	chr10	72097040	72161556	ASCC1|ENST00000530394.5	-	72097040,72102333,72128081,72133056,72152868,72161537	72097450,72102412,72128167,72133181,72152988,72161556	0.782051
heart_male_adult_34_years	chr5	79481676	79481747	79481703	-	RAMPAGE_only	107	127	882	32.529250	6.121539	chr5	79481262	79481938	LINE|L1|L1MEc	+	chr5	79354106	79482822	STRG.36628.2	-	79354106,79361950,79396822,79397526,79401898,79439009,79447052,79450989,79456861,79481631	79358935,79376197,79396903,79397637,79402055,79439149,79447145,79451121,79457018,79482822	0.918367
heart_male_adult_34_years	chr12	90576257	90576495	90576259	+	High_confidence	114	212	888	32.750537	6.637488	chr12	90570465	90576624	LINE|L1|L1MA3	-	chr12	90576180	90640960	STRG.76916.4	+	90576180,90593568	90576581,90640960	0.936937
heart_male_adult_34_years	chr9	101385007	101385008	101385007	-	High_confidence	19	19	21	0.774506	4.037401	chr9	101384858	101386000	LTR|ERVK|MER11A	-	chr9	101360416	101385005	BAAT|NM_001701.3	-	101360416,101368119,101370938,101384854	101363015,101368322,101371463,101385005	0.857143
heart_male_adult_34_years	chr4	87530813	87530870	87530813	-	High_confidence	41	42	78	2.876736	5.387226	chr4	87530812	87530989	SINE|MIR|MIR1_Amn	-	chr4	87494439	87531049	SPARCL1|ENST00000512317.5	-	87494439,87494980,87499520,87529044,87530544,87530977	87494598,87495127,87499585,87529101,87530631,87531049	0.820513
heart_male_adult_34_years	chr6	12103381	12103425	12103424	+	RAMPAGE_only	39	41	105	3.872530	5.745784	chr6	12103250	12103431	SINE|MIR|MIRb	-	chr6	12012490	12164999	HIVEP1|NM_002114.3	+	12012490,12015525,12089183,12119889,12129758,12130766,12135790,12161438,12163282	12012566,12015668,12089237,12125870,12129892,12130942,12135892,12161929,12164999	0.609524
heart_male_adult_34_years	chr9	73452778	73452779	73452778	+	RAMPAGE_only	10	10	10	0.368812	2.921928	chr9	73452617	73452998	LTR|ERVL-MaLR|MSTA	+	chr9	73445640	73550514	STRG.60533.3	+	73445640,73465113	73465079,73550514	1.000000
heart_male_adult_34_years	chr1	61869801	61869802	61869801	+	RAMPAGE_only	7	7	9	0.331931	2.500000	chr1	61869626	61870561	LTR|ERV1|LTR1D	-	chr1	61805509	62163504	PATJ|ENST00000484937.5	+	61805509,61808473,61822944,61827421,61833653,61856029,61861550,61864237,61875242,61884236,61899582,61901281,61908371,61914586,61927729,61990167,62017855,62037976,62050965,62079449,62084514,62108436,62114052,62116531,62117131,62121185,62123020,62127971,62128840,62148283,62153357,62160907,62162882	61805524,61808530,61823079,61827583,61833785,61856239,61861667,61864633,61875366,61884408,61899654,61901459,61908482,61914664,61927829,61990364,62017947,62038049,62051058,62079567,62084648,62108520,62114246,62116679,62117218,62121295,62123058,62128094,62128945,62148390,62153481,62161389,62163504	0.777778
heart_male_adult_34_years	chr2	96638011	96638060	96638022	-	High_confidence	8	8	35	1.290843	4.490919	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96631337	96638060	KANSL3|ENST00000475820.1	-	96631337,96636920,96637948	96631543,96637185,96638060	0.542857
heart_male_adult_34_years	chr18	9126606	9126637	9126606	+	RAMPAGE_only	6	6	22	0.811387	4.121928	chr18	9126653	9126774	SINE|Alu|AluJo	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	0.818182
heart_male_adult_34_years	chr8	123413339	123413365	123413364	-	RAMPAGE_only	8	8	41	1.512131	4.853056	chr8	123412758	123413395	LTR|ERV1|MER67B	+	chr8	123320501	123416350	ATAD2|ENST00000521903.5	-	123320501,123322937,123325892,123328189,123333877,123334199,123336372,123337624,123339310,123344883,123346085,123346617,123347091,123348186,123349284,123356388,123357561,123359220,123359576,123361538,123369057,123369820,123370902,123371235,123371669,123372636,123380528,123400742,123416247	123321175,123323066,123326026,123328579,123334021,123334322,123336532,123337821,123339446,123345069,123346272,123346750,123347406,123348273,123349421,123356477,123357736,123359336,123359685,123361646,123369175,123370024,123370990,123371338,123371835,123372686,123380677,123401175,123416350	0.707317
heart_male_adult_34_years	chr10	46292539	46292548	46292539	+	High_confidence	6	8	20	0.737625	3.721612	chr10	46292515	46292574	LINE|L2|L2c	-	chr10	46292809	46294110	ANTXRL|ENST00000610892.1	+	46292809,46293828	46293100,46294110	0.550000
heart_male_adult_34_years	chr2	198113521	198113538	198113535	+	RAMPAGE_only	13	15	37	1.364606	3.884795	chr2	198113329	198113594	LINE|L2|L2b	-	chr2	198083748	198149884	PLCL1|ENST00000437704.3	+	198083748,198088857,198101284,198103826,198146779	198086232,198089061,198101360,198103936,198149884	0.891892
heart_male_adult_34_years	chr18	28159296	28159297	28159296	-	High_confidence	6	6	8	0.295050	2.521641	chr18	28159142	28159517	LTR|ERVL|LTR79	+	chr18	28011917	28159297	CDH2|ENST00000413878.1	-	28011917,28013682,28147672,28159148	28011992,28013909,28147784,28159297	0.500000
heart_male_adult_34_years	chr4	119128434	119128482	119128458	+	RAMPAGE_only	9	9	39	1.438368	4.609384	chr4	119128208	119128490	LINE|L2|L2	+	chr4	119135783	119187789	MYOZ2|ENST00000307128.5	+	119135783,119136511,119150871,119158021,119164210,119185965	119135982,119136601,119151041,119158151,119164394,119187789	0.512821
heart_male_adult_34_years	chr16	23595453	23595454	23595453	-	High_confidence	9	9	9	0.331931	2.725481	chr16	23595357	23595584	DNA|TcMar-Tigger|MER8	-	chr16	23581013	23596277	NDUFAB1|ENST00000562133.5	-	23581013,23582275,23585335,23596122	23581173,23582375,23585423,23596277	1.000000
heart_male_adult_34_years	chr6	77369106	77369167	77369166	-	High_confidence	80	110	385	14.199276	6.898581	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77143510	77369189	STRG.44162.5	-	77143510,77151818,77211980,77271339,77273026,77316635,77350621,77368885	77151280,77151974,77212053,77271493,77273307,77316704,77350734,77369189	0.867532
heart_male_adult_34_years	chr16	11587474	11587475	11587474	-	High_confidence	6	6	8	0.295050	3.000000	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
heart_male_adult_34_years	chr2	219420860	219420939	219420938	+	RAMPAGE_only	47	56	436	16.080219	6.572124	chr2	219420988	219421091	SINE|MIR|MIRc	+	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	0.993119
heart_male_adult_34_years	chr14	20799948	20799967	20799948	-	High_confidence	13	15	31	1.143318	4.696132	chr14	20799858	20799987	LTR|ERVL|LTR47A2	-	chr14	20796487	20800462	STRG.81505.2	-	20796487	20800462	0.612903
heart_male_adult_34_years	chr12	22920242	22920248	22920247	+	High_confidence	231	231	438	16.153981	6.514496	chr12	22920217	22920422	DNA|hAT-Charlie|Charlie17a	-	chr12	22920129	23174123	STRG.74478.1	+	22920129,22969362,22970835,22972375,23046107,23053990,23057165,23057779,23167038,23173388	22920365,22969465,22971094,22972468,23046201,23054323,23057297,23057897,23167078,23174123	0.847032
heart_male_adult_34_years	chr1	246176568	246176578	246176577	-	RAMPAGE_only	3	3	7	0.258169	2.584963	chr1	246176527	246176817	SINE|Alu|AluJb	-	chr1	245858561	246193727	SMYD3|ENST00000391836.3	-	245858561,245863798,245915529,245927930,245929869,246186742,246193674	245858670,245863886,245915640,245928033,245929937,246186942,246193727	0.714286
heart_male_adult_34_years	chr18	7946867	7946888	7946878	+	High_confidence	12	12	31	1.143318	4.348394	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.935484
heart_male_adult_34_years	chr1	226364261	226364323	226364261	-	High_confidence	28	28	92	3.393074	5.780469	chr1	226364119	226364211	SINE|MIR|MIRb	-	chr1	226361318	226364372	PARP1|ENST00000463968.5	-	226361318,226361968,226363098,226363942	226361541,226362083,226363160,226364372	1.000000
heart_male_adult_34_years	chr12	32834221	32834222	32834221	-	RAMPAGE_only	12	12	16	0.590100	3.250000	chr12	32834048	32834260	LINE|L2|L2c	+	chr12	32821466	32824405	PKP2|ENST00000546498.1	-	32821466,32822466,32824044	32821529,32822631,32824405	0.875000
heart_male_adult_34_years	chr4	184537517	184537554	184537553	-	High_confidence	20	23	66	2.434162	4.513509	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184531532	184537543	STRG.34258.1	-	184531532	184537543	0.939394
heart_male_adult_34_years	chr12	104864927	104864935	104864934	+	RAMPAGE_only	5	5	13	0.479456	3.392747	chr12	104863461	104865746	LINE|L1|HAL1	-	chr12	104858837	104871612	STRG.77677.1	+	104858837,104870161	104858907,104871612	0.923077
heart_male_adult_34_years	chr4	47831339	47831341	47831339	+	High_confidence	1431	1639	2112	77.893170	8.147086	chr4	47831064	47831545	LINE|RTE-BovB|MamRTE1	+	chr4	47831344	47896848	LOC101927179|NR_125880.1	+	47831344,47875176,47896541	47831508,47875331,47896848	0.555398
heart_male_adult_34_years	chr1	84797724	84797744	84797724	-	High_confidence	56	63	167	6.159166	5.603761	chr1	84797239	84797693	LTR|ERVL-MaLR|MLT1C	-	chr1	84779024	84797784	STRG.3959.1	-	84779024,84785147,84796264,84797230,84797714	84782877,84785309,84796513,84797601,84797784	0.982036
heart_male_adult_34_years	chr3	183452141	183452169	183452144	+	RAMPAGE_only	5	5	17	0.626981	2.827820	chr3	183452059	183452354	SINE|Alu|AluSz6	-	chr3	183447650	183455625	LINC00888|ENST00000468380.1	+	183447650,183452077,183454011,183455198	183447947,183452512,183454093,183455625	0.941176
heart_male_adult_34_years	chr11	14759567	14759568	14759567	+	RAMPAGE_only	9	9	14	0.516337	3.378783	chr11	14759548	14759845	SINE|Alu|AluSc	-	chr11	14643722	14872059	PDE3B|NM_000922.3	+	14643722,14771936,14786436,14789105,14803943,14818182,14819135,14830697,14831639,14832721,14834981,14843826,14859042,14861204,14867505,14869460	14645053,14771987,14786685,14789242,14804050,14818393,14819209,14830846,14831777,14832833,14835095,14844026,14859246,14861366,14867758,14872059	0.571429
heart_male_adult_34_years	chr2	3536822	3536873	3536839	-	High_confidence	6	6	55	2.028468	5.277363	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531989	3536869	STRG.9943.6	-	3531989,3533710,3534112,3536197	3532310,3533909,3534255,3536869	0.854545
heart_male_adult_34_years	chr1	16019255	16019270	16019255	-	High_confidence	2	2	9	0.331931	3.000000	chr1	16019218	16019288	LINE|L2|L2b	+	chr1	16014027	16019594	HSPB7|ENST00000375718.4	-	16014027,16017073,16017764,16019133	16015759,16017207,16017852,16019594	0.666667
heart_male_adult_34_years	chr21	28048410	28048414	28048413	+	High_confidence	15	15	24	0.885150	3.621654	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048413	28137609	LOC284825|NR_126010.1	+	28048413,28102549,28130529,28135313,28136689	28048537,28102769,28130622,28135708,28137609	0.916667
heart_male_adult_34_years	chr5	154038408	154038409	154038408	-	High_confidence	5	5	7	0.258169	2.584963	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.714286
heart_male_adult_34_years	chr14	32075821	32075822	32075821	+	High_confidence	14	14	18	0.663862	3.852169	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32075792	32154827	STRG.81978.6	+	32075792,32090501,32117139,32146262,32149901,32152422,32154620	32076657,32094386,32117287,32146340,32150033,32152528,32154827	0.944444
heart_male_adult_34_years	chr2	186607926	186607952	186607926	+	High_confidence	114	115	428	15.785169	6.967977	chr2	186607713	186608293	LTR|ERVL?|LTR87	-	chr2	186607929	186680897	STRG.17016.3	+	186607929,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186608168,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186680897	0.817757
heart_male_adult_34_years	chr2	37020137	37020138	37020137	-	RAMPAGE_only	7	7	11	0.405694	3.459432	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	36980896	37084342	HEATR5B|ENST00000233099.5	-	36980896,36988645,36990647,37000585,37002305,37003541,37005631,37007049,37008610,37013840,37019808,37020654,37027922,37028680,37032628,37037854,37040328,37041132,37049652,37053501,37056439,37057316,37058450,37058887,37060580,37061938,37064739,37065754,37068680,37070229,37072109,37075484,37076910,37079119,37083288,37084268	36981794,36988859,36990799,37000813,37002572,37003686,37005759,37007304,37008848,37014020,37019877,37020836,37028174,37028920,37032773,37038024,37040518,37041292,37049843,37053607,37056615,37057480,37058560,37058987,37060733,37062050,37064990,37065910,37068930,37070387,37072281,37075634,37077019,37079331,37083436,37084342	0.818182
heart_male_adult_34_years	chr5	140228519	140228540	140228534	+	RAMPAGE_only	2	2	9	0.331931	2.750000	chr5	140228522	140228621	LINE|L2|L2b	-	chr5	140175067	140243789	CYSTM1|NM_032412.3	+	140175067,140194445,140243304	140175285,140194652,140243789	0.666667
heart_male_adult_34_years	chr5	172607555	172607605	172607572	+	High_confidence	38	40	100	3.688124	5.581468	chr5	172607552	172608062	LINE|L2|L2b	-	chr5	172607547	172609937	STRG.40740.1	+	172607547	172609937	0.880000
heart_male_adult_34_years	chr15	25346023	25346051	25346023	-	High_confidence	53	53	212	7.818822	6.251538	chr15	25345979	25347018	LINE|L1|L1ME2	+	chr15	25333727	25346031	UBE3A|ENST00000636667.1	-	25333727,25340084,25345979	25339257,25340228,25346031	0.943396
heart_male_adult_34_years	chr2	229232047	229232054	229232053	-	High_confidence	8	9	18	0.663862	3.410417	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.722222
heart_male_adult_34_years	chr12	643625	643636	643625	-	High_confidence	8	8	35	1.290843	4.376011	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	565359	643636	NINJ2|ENST00000433832.2	-	565359,643510	566178,643636	0.600000
heart_male_adult_34_years	chr4	185878687	185878753	185878703	-	High_confidence	9	11	75	2.766093	4.947506	chr4	185878408	185878937	LINE|L2|L2	+	chr4	185870102	185878770	STRG.34833.1	-	185870102	185878770	0.720000
heart_male_adult_34_years	chr5	34244730	34244754	34244753	-	High_confidence	7	7	24	0.885150	4.251629	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.500000
heart_male_adult_34_years	chr1	11984765	11984766	11984765	+	RAMPAGE_only	220	232	286	10.548033	6.612813	chr1	11984495	11985279	LTR|ERVL|MER21A	+	chr1	11981991	12013508	STRG.454.1	+	11981991,11982522,11989164,11992554,11996155,11997296,11998769,11998987,12001400,12001768,12001981,12003991,12004508,12004824,12005710,12006537,12007052,12009591,12011495,12013119	11982114,11982590,11989343,11992690,11996318,11997421,11998878,11999095,12001554,12001836,12002103,12004118,12004613,12004927,12005931,12006693,12007249,12009726,12013095,12013508	0.762238
heart_male_adult_34_years	chr15	76576920	76577008	76577007	-	High_confidence	12	12	77	2.839855	5.022755	chr15	76576480	76577164	LINE|L1|L1MA3	+	chr15	76471261	76576985	SCAPER|ENST00000569784.1	-	76471261,76504858,76567269,76574157,76576858	76471335,76504974,76567405,76574284,76576985	0.662338
heart_male_adult_34_years	chr4	2867795	2867851	2867835	+	High_confidence	22	22	101	3.725005	5.390854	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.990099
heart_male_adult_34_years	chrX	2321583	2321588	2321583	+	High_confidence	3	3	13	0.479456	3.392747	chrX	2321387	2321730	LTR|ERVL-MaLR|MLT1A	+	chrX	2321166	2329169	STRG.106940.1	+	2321166,2326017,2326831	2321916,2326181,2329169	0.846154
heart_male_adult_34_years	chr6	137218788	137218822	137218821	-	High_confidence	10	10	29	1.069556	4.004364	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.965517
heart_male_adult_34_years	chr2	37737597	37737614	37737608	-	High_confidence	30	32	71	2.618568	4.982228	chr2	37737141	37737728	LINE|L1|L1MEc	+	chr2	37718671	37737607	STRG.11361.1	-	37718671,37737402	37719944,37737607	0.704225
heart_male_adult_34_years	chr8	144427929	144427954	144427929	+	High_confidence	3	3	12	0.442575	3.277613	chr8	144427788	144427946	LINE|L2|L2	-	chr8	144427933	144432248	STRG.58305.1	+	144427933	144432248	0.750000
heart_male_adult_34_years	chr2	88659147	88659169	88659155	+	High_confidence	5	6	18	0.663862	3.683542	chr2	88659131	88659222	LINE|L2|L2b	+	chr2	88659148	88687431	STRG.13890.1	+	88659148,88671584,88685694	88659517,88671682,88687431	0.666667
heart_male_adult_34_years	chr12	58105436	58105470	58105436	+	RAMPAGE_only	2	2	12	0.442575	3.418296	chr12	58105091	58105807	LINE|L2|L2c	-	chr12	58103906	58105935	AC090643.2|ENST00000623442.1	+	58103906	58105935	0.833333
heart_male_adult_34_years	chr19	12773701	12773707	12773701	-	High_confidence	8	8	15	0.553219	3.640224	chr19	12773556	12774082	LINE|L2|L2a	+	chr19	12771394	12773253	HOOK2|ENST00000588052.5	-	12771394,12772189,12772612,12772779,12772993	12771477,12772252,12772680,12772912,12773253	0.933333
heart_male_adult_34_years	chr7	11193340	11193360	11193340	+	High_confidence	9	9	20	0.737625	3.621928	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.700000
heart_male_adult_34_years	chr1	95042538	95042545	95042538	-	RAMPAGE_only	11	11	18	0.663862	3.381580	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.500000
heart_male_adult_34_years	chr1	189149625	189149647	189149646	+	High_confidence	7	7	25	0.922031	3.893661	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	189149633	189150949	STRG.7572.1	+	189149633,189150541	189149876,189150949	0.760000
heart_male_adult_34_years	chrX	136168194	136168209	136168194	+	High_confidence	13	13	30	1.106437	3.865765	chrX	136168049	136168241	SINE|MIR|MIR	-	chrX	136168193	136208575	FHL1|ENST00000434885.5	+	136168193,136169906,136206406,136207015,136207791,136208454	136168267,136169980,136206588,136207190,136207961,136208575	0.866667
heart_male_adult_34_years	chr6	138833693	138833766	138833765	-	High_confidence	3	3	13	0.479456	3.251629	chr6	138833577	138833832	SINE|Alu|AluSx	+	chr6	138820918	138834000	STRG.46664.1	-	138820918,138825094,138833474	138821427,138825579,138834000	0.692308
heart_male_adult_34_years	chr5	71631345	71631355	71631354	+	RAMPAGE_only	8	8	20	0.737625	4.037401	chr5	71631155	71631473	LINE|L2|L2c	-	chr5	71602508	71636711	MCCC2|ENST00000510895.6	+	71602508,71604355,71626639,71632120,71634942,71635150	71602633,71604468,71626753,71632185,71635042,71636711	0.500000
heart_male_adult_34_years	chr15	70942791	70942838	70942791	+	RAMPAGE_only	28	28	80	2.950499	5.284635	chr15	70942582	70942814	LTR|ERV1|MER4E1	-	chr15	70936534	71008438	LRRC49|ENST00000559806.5	+	70936534,70963784,70980100,70984093,71008378	70936822,70963932,70980184,70984257,71008438	0.900000
heart_male_adult_34_years	chr9	121657626	121657627	121657626	+	RAMPAGE_only	11	11	13	0.479456	3.085055	chr9	121657411	121657646	SINE|MIR|MIRb	-	chr9	121651684	121678845	DAB2IP|ENST00000465078.1	+	121651684,121678677	121651899,121678845	0.538462
heart_male_adult_34_years	chr1	227244059	227244066	227244065	-	RAMPAGE_only	18	20	42	1.549012	4.588164	chr1	227243888	227244587	LINE|L1|L1ME3	+	chr1	227193650	227317047	CDC42BPA|ENST00000478573.6	-	227193650,227199556,227213135,227254063,227317004	227193934,227199652,227213219,227254155,227317047	0.595238
heart_male_adult_34_years	chr4	102431228	102431248	102431237	-	High_confidence	6	6	13	0.479456	3.022055	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.538462
heart_male_adult_34_years	chr1	20031532	20031541	20031540	+	RAMPAGE_only	11	11	20	0.737625	3.932138	chr1	20031175	20034775	LTR|ERV1|LTR46-int	-	chr1	20028525	20086227	STRG.789.14	+	20028525,20068872,20084820,20086082	20059692,20070465,20084870,20086227	0.650000
heart_male_adult_34_years	chr20	64265511	64265530	64265529	+	High_confidence	5	6	13	0.479456	3.085055	chr20	64265443	64265603	SINE|MIR|MIR	-	chr20	64265511	64273545	PCMTD2|ENST00000609818.1	+	64265511,64267886,64273220	64265613,64268010,64273545	0.923077
heart_male_adult_34_years	chr8	53523862	53524086	53523963	-	High_confidence	175	182	403	14.863138	6.548130	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.972705
heart_male_adult_34_years	chr16	66903359	66903360	66903359	-	RAMPAGE_only	8	10	12	0.442575	2.855389	chr16	66903357	66903473	SINE|MIR|MIR3	-	chr16	66898329	66905190	STRG.91528.1	-	66898329,66900150,66903290	66899009,66900493,66905190	0.833333
heart_male_adult_34_years	chr19	41320228	41320235	41320234	+	High_confidence	7	7	12	0.442575	2.913977	chr19	41320174	41320256	LINE|L2|L2b	+	chr19	41319732	41320754	CCDC97|ENST00000600918.1	+	41319732,41320340	41319852,41320754	0.583333
heart_male_adult_34_years	chr11	17225067	17225068	17225067	+	RAMPAGE_only	8	8	9	0.331931	3.000000	chr11	17224821	17225165	LINE|L2|L2a	+	chr11	17260355	17310937	NUCB2|ENST00000530527.5	+	17260355,17267587,17269184,17275612,17276007,17282788,17286633,17291239,17295323,17296103,17301743,17309571,17310824	17260501,17267681,17269331,17275909,17276203,17282943,17286713,17291365,17295467,17296211,17301870,17309675,17310937	0.555556
heart_male_adult_34_years	chr17	4143196	4143215	4143199	+	High_confidence	175	179	492	18.145568	5.723732	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.963415
heart_male_adult_34_years	chr4	122700441	122700442	122700441	+	High_confidence	437	446	576	21.243592	6.646511	chr4	122700197	122700669	LTR|ERVL|MER70A	+	chr4	122700425	122725747	STRG.31827.3	+	122700425,122720977	122720922,122725747	0.909722
heart_male_adult_34_years	chr1	226542738	226542739	226542738	-	High_confidence	64	65	73	2.692330	5.194904	chr1	226542461	226543018	LTR|ERVL|LTR66	-	chr1	226535457	226542727	STRG.9090.1	-	226535457,226542638	226538699,226542727	0.821918
heart_male_adult_34_years	chr15	97521626	97521666	97521630	-	High_confidence	46	47	126	4.647036	5.957705	chr15	97521399	97521640	SINE|tRNA|LFSINE_Vert	+	chr15	97394451	97521811	STRG.89089.2	-	97394451,97427650,97515286,97521488	97397740,97427952,97515424,97521811	0.746032
heart_male_adult_34_years	chr16	86727330	86727347	86727346	+	High_confidence	38	38	99	3.651242	5.951245	chr16	86727319	86727414	SINE|Alu|AluSx3	+	chr16	86727346	86738593	LINC02188|ENST00000649094.1	+	86727346,86727867,86734825,86737409	86727536,86727967,86734909,86738593	0.818182
heart_male_adult_34_years	chr4	47831222	47831240	47831222	+	High_confidence	2	2	9	0.331931	2.500000	chr4	47831064	47831545	LINE|RTE-BovB|MamRTE1	+	chr4	47831344	47896848	LOC101927179|NR_125881.1	+	47831344,47875205,47896541	47831508,47875331,47896848	0.555556
heart_male_adult_34_years	chr1	147517874	147517875	147517874	-	High_confidence	12	14	14	0.516337	3.521641	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147258884	147517875	LINC00624|ENST00000619867.4	-	147258884,147384667,147408589,147514337,147515520,147517442	147260976,147384863,147408689,147514448,147515676,147517875	0.928571
heart_male_adult_34_years	chr3	12514059	12514060	12514059	+	RAMPAGE_only	5	5	7	0.258169	2.584963	chr3	12513979	12514484	LINE|L2|L2b	-	chr3	12529778	12539288	TSEN2|ENST00000455118.5	+	12529778,12531569,12532661,12538801	12529873,12531659,12532773,12539288	0.714286
heart_male_adult_34_years	chr2	133986260	133986325	133986306	-	RAMPAGE_only	44	49	335	12.355214	6.121778	chr2	133986057	133986487	LTR|ERVL-MaLR|MLT1C	-	chr2	133915282	133987405	STRG.15320.5	-	133915282,133953986,133956964,133978030,133980289	133953014,133954058,133978004,133980261,133987405	0.994030
heart_male_adult_34_years	chr3	153553444	153553445	153553444	-	RAMPAGE_only	11	11	11	0.405694	2.913977	chr3	153553066	153553660	DNA|TcMar-Tigger|MER6A	-	chr3	153384933	153387368	LINC02006|ENST00000492569.1	-	153384933,153385867	153385390,153387368	0.727273
heart_male_adult_34_years	chr8	57746128	57746129	57746128	+	High_confidence	22	23	25	0.922031	3.013020	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	1.000000
heart_male_adult_34_years	chr2	193171146	193171147	193171146	-	High_confidence	22	22	27	0.995793	3.653661	chr2	193170704	193171720	LINE|L1|L1HS	+	chr2	193160025	193171187	STRG.17411.1	-	193160025,193167259,193171050	193160431,193167377,193171187	0.740741
heart_male_adult_34_years	chr1	231422744	231422749	231422748	-	RAMPAGE_only	12	12	23	0.848268	3.265583	chr1	231422714	231422871	SINE|MIR|MIRb	-	chr1	231363750	231425044	EGLN1|ENST00000366641.3	-	231363750,231367568,231370561,231373979,231420997	231366475,231367636,231370698,231374099,231425044	0.956522
heart_male_adult_34_years	chr7	11194708	11194724	11194708	+	RAMPAGE_only	46	50	70	2.581686	5.091698	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.557143
heart_male_adult_34_years	chr1	205512274	205512317	205512316	+	RAMPAGE_only	44	44	143	5.274017	6.258877	chr1	205512088	205512401	LINE|L2|L2	-	chr1	205504801	205527825	CDK18|ENST00000419301.1	+	205504801,205523146,205523482,205524231,205525138,205526064,205526366,205526774,205527793	205504878,205523297,205523715,205524357,205525195,205526179,205526461,205526837,205527825	0.594406
heart_male_adult_34_years	chr1	20639932	20639962	20639954	+	RAMPAGE_only	13	13	46	1.696537	4.257500	chr1	20640002	20640112	LINE|L2|L2b	+	chr1	20638128	20651316	PINK1|ENST00000492302.1	+	20638128,20644489,20645559,20648504,20650433	20639992,20644672,20645723,20649231,20651316	1.000000
heart_male_adult_34_years	chr19	47227161	47227223	47227161	-	High_confidence	3	3	21	0.774506	3.820889	chr19	47227045	47227213	SINE|MIR|MIR1_Amn	-	chr19	47221644	47227189	BBC3|ENST00000598636.1	-	47221644,47226563	47221918,47227189	0.952381
heart_male_adult_34_years	chr2	185425413	185425448	185425413	+	RAMPAGE_only	8	8	20	0.737625	3.784184	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185482549	185487788	STRG.16867.1	+	185482549	185487788	0.550000
heart_male_adult_34_years	chr4	158841765	158841813	158841812	+	RAMPAGE_only	80	80	285	10.511152	6.807709	chr4	158841566	158842041	LTR|ERVL|LTR75	+	chr4	158832079	158908049	STRG.33391.5	+	158832079,158833527,158833800,158835404,158851320,158859056,158859577,158861341,158861606,158868101,158870312,158891445,158895749,158904465	158832138,158833628,158833890,158841952,158851450,158859258,158859666,158861488,158861776,158869428,158870469,158891646,158895865,158908049	0.712281
heart_male_adult_34_years	chr5	147382877	147382900	147382899	+	High_confidence	10	12	38	1.401487	3.674916	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.947368
heart_male_adult_34_years	chr3	151539200	151539271	151539270	-	RAMPAGE_only	4	4	28	1.032675	3.657385	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.500000
heart_male_adult_34_years	chr8	86417214	86417236	86417235	+	High_confidence	96	97	219	8.076991	6.391192	chr8	86417268	86417372	DNA|hAT-Charlie|MER58D	+	chr8	86417222	86431665	WWP1|ENST00000521079.1	+	86417222,86425222,86427642,86430696,86431405,86431614	86417279,86425318,86427817,86430751,86431490,86431665	0.872146
heart_male_adult_34_years	chr2	96303166	96303178	96303177	-	RAMPAGE_only	10	12	25	0.922031	3.464235	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.920000
heart_male_adult_34_years	chr1	167937081	167937107	167937081	+	High_confidence	5	5	13	0.479456	3.026987	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167937152	167993330	DCAF6|ENST00000455334.5	+	167937152,167951799,167966628,167974829,167987494,167991203,167993225	167937252,167951861,167966721,167975015,167987608,167991339,167993330	0.923077
heart_male_adult_34_years	chr1	35320229	35320272	35320259	+	RAMPAGE_only	9	9	50	1.844062	5.022474	chr1	35320238	35320853	LTR|ERVL|MER21C	+	chr1	35269032	35359229	ZMYM4|ENST00000441447.1	+	35269032,35295926,35325359,35358924	35269085,35295988,35325405,35359229	0.620000
heart_male_adult_34_years	chr20	13851415	13851426	13851425	-	High_confidence	4	4	12	0.442575	2.913977	chr20	13851304	13851476	LINE|L2|L2a	+	chr20	13849246	13851419	SEL1L2|ENST00000482196.5	-	13849246,13850190,13851323	13849604,13850319,13851419	0.916667
heart_male_adult_34_years	chr2	178874960	178874993	178874960	-	RAMPAGE_only	8	9	20	0.737625	3.892407	chr2	178874815	178875282	LINE|L1|L1MEg1	+	chr2	178835755	178884951	CCDC141|ENST00000343876.6	-	178835755,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900	178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178884951	0.850000
heart_male_adult_34_years	chr1	23417957	23417982	23417957	-	RAMPAGE_only	3	5	14	0.516337	3.546594	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.785714
heart_male_adult_34_years	chr1	174161426	174161465	174161426	+	RAMPAGE_only	7	9	28	1.032675	4.208410	chr1	174161256	174161539	SINE|Alu|AluSp	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.964286
heart_male_adult_34_years	chr3	126293942	126293957	126293942	-	RAMPAGE_only	6	6	19	0.700743	3.826875	chr3	126293802	126293902	LINE|L1|L1MC4a	-	chr3	126289881	126301249	STRG.24442.1	-	126289881,126293918,126300678	126290757,126294477,126301249	0.578947
heart_male_adult_34_years	chr2	206847091	206847103	206847099	+	RAMPAGE_only	49	49	106	3.909411	4.598309	chr2	206847063	206847472	LINE|L2|L2c	-	chr2	206934362	206962874	STRG.17962.12	+	206934362,206949616,206955462,206958300,206959630,206960851,206962411	206935001,206949713,206955564,206958405,206959741,206960942,206962874	0.858491
heart_male_adult_34_years	chr6	31186054	31186118	31186117	-	High_confidence	24	32	130	4.794561	5.569276	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31181802	31186528	STRG.42587.1	-	31181802	31186528	0.984615
heart_male_adult_34_years	chr18	28171773	28171774	28171773	-	RAMPAGE_only	79	83	106	3.909411	5.961945	chr18	28171751	28171822	SINE|MIR|MIR3	-	chr18	27950962	28177446	CDH2|NM_001792.4	-	27950962,27963356,27982943,27984999,27985527,27988523,27990096,27992654,27993499,28002996,28005848,28009716,28011845,28013682,28147672,28176962	27952359,27963521,27983083,27985233,27985761,27988666,27990350,27992840,27993637,28003169,28005993,28009872,28011992,28013909,28147784,28177446	0.707547
heart_male_adult_34_years	chr9	43118585	43118702	43118585	-	RAMPAGE_only	40	45	194	7.154960	5.930788	chr9	43118175	43118598	LINE|L2|L2b	+	chr9	43101944	43127253	STRG.59946.2	-	43101944,43111831,43113288,43115596,43125879,43127029	43111403,43111955,43113416,43125237,43125930,43127253	0.984536
heart_male_adult_34_years	chr2	240022172	240022173	240022172	-	RAMPAGE_only	11	12	12	0.442575	3.095795	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.916667
heart_male_adult_34_years	chr10	35449700	35449735	35449714	+	RAMPAGE_only	8	8	34	1.253962	4.300554	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.735294
heart_male_adult_34_years	chr3	37044684	37044685	37044684	+	RAMPAGE_only	4	6	7	0.258169	2.584963	chr3	37044683	37045702	LINE|L1|L1M5	-	chr3	36993847	37050706	STRG.21400.2	+	36993847,36996618,37000954,37004400,37006990,37008813,37011819,37012010,37014431,37017505,37020309,37025636,37028783,37040185,37042267,37047518,37048516,37048903,37050485	36993890,36996709,37001053,37004474,37007063,37008905,37011862,37012099,37014544,37017599,37020463,37026007,37028932,37040294,37042331,37047683,37048609,37049017,37050706	0.857143
heart_male_adult_34_years	chr11	58578123	58578239	58578132	-	High_confidence	17	25	120	4.425748	5.450088	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58527038	58578166	STRG.69545.2	-	58527038,58528042,58549785,58549972,58550784,58551064,58554840,58564154,58570555,58576733	58527723,58528191,58549867,58550146,58550880,58551232,58554940,58564201,58570713,58578166	0.991667
heart_male_adult_34_years	chr4	119145824	119145830	119145829	+	RAMPAGE_only	15	17	32	1.180200	4.260333	chr4	119145674	119147458	LINE|L1|L1MD1	-	chr4	119135783	119187789	MYOZ2|ENST00000307128.5	+	119135783,119136511,119150871,119158021,119164210,119185965	119135982,119136601,119151041,119158151,119164394,119187789	0.937500
heart_male_adult_34_years	chr4	185620099	185620144	185620108	-	RAMPAGE_only	14	22	67	2.471043	4.708840	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.791045
heart_male_adult_34_years	chr8	56559496	56559521	56559496	-	High_confidence	30	31	48	1.770299	4.631328	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56558976	56559418	STRG.54989.1	-	56558976	56559418	0.875000
heart_male_adult_34_years	chr19	38376015	38376033	38376032	+	RAMPAGE_only	9	9	25	0.922031	4.453661	chr19	38375972	38376110	SINE|MIR|MIR	-	chr19	38375008	38382753	PSMD8|ENST00000592035.5	+	38375008,38376159,38376351,38379239,38380898,38382116	38375509,38376232,38376454,38379405,38380999,38382753	0.640000
heart_male_adult_34_years	chr14	54498749	54498780	54498764	-	RAMPAGE_only	10	10	34	1.253962	4.454822	chr14	54497029	54498856	LTR|ERV1|HERV35I-int	-	chr14	54474484	54489196	GMFB|ENST00000358056.7	-	54474484,54479785,54480873,54481408,54482152,54483670,54488924	54478159,54479859,54480956,54481458,54482202,54483767,54489196	0.647059
heart_male_adult_34_years	chr18	2589097	2589121	2589120	+	RAMPAGE_only	7	9	22	0.811387	3.621928	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	0.818182
heart_male_adult_34_years	chr1	202452449	202452514	202452513	-	High_confidence	17	17	49	1.807181	4.414833	chr1	202451192	202452602	Retroposon|SVA|SVA_D	-	chr1	202451220	202452489	STRG.8219.1	-	202451220	202452489	0.979592
heart_male_adult_34_years	chr6	77369031	77369032	77369031	-	High_confidence	11	15	17	0.626981	3.852169	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77143510	77369189	STRG.44162.5	-	77143510,77151818,77211980,77271339,77273026,77316635,77350621,77368885	77151280,77151974,77212053,77271493,77273307,77316704,77350734,77369189	0.823529
heart_male_adult_34_years	chr11	17225031	17225032	17225031	+	RAMPAGE_only	4	4	7	0.258169	2.584963	chr11	17224821	17225165	LINE|L2|L2a	+	chr11	17208152	17295424	NUCB2|ENST00000528644.5	+	17208152,17282788,17295323	17208426,17282943,17295424	0.571429
heart_male_adult_34_years	chr1	89272819	89272887	89272886	-	High_confidence	15	17	76	2.802974	4.833151	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	1.000000
heart_male_adult_34_years	chr9	92536651	92536704	92536674	-	High_confidence	12	12	51	1.880943	4.797343	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.941176
heart_male_adult_34_years	chr19	12773735	12773736	12773735	-	High_confidence	8	8	8	0.295050	2.750000	chr19	12773556	12774082	LINE|L2|L2a	+	chr19	12771394	12773253	HOOK2|ENST00000588052.5	-	12771394,12772189,12772612,12772779,12772993	12771477,12772252,12772680,12772912,12773253	0.875000
heart_male_adult_34_years	chr1	226278060	226278061	226278060	-	RAMPAGE_only	7	7	11	0.405694	2.921928	chr1	226277990	226278133	SINE|Alu|AluSz6	-	chr1	226231148	226309172	LIN9|ENST00000460719.5	-	226231148,226233095,226233343,226238970,226250838,226265532,226266212,226267956,226277774,226286332,226287663,226297718,226301172,226309108	226232606,226233193,226233523,226239096,226250919,226265634,226266332,226268090,226277932,226286458,226287797,226297813,226301205,226309172	0.909091
heart_male_adult_34_years	chr8	76308562	76308599	76308562	-	High_confidence	3	3	20	0.737625	3.821928	chr8	76308116	76314119	LINE|L1|L1PA2	+	chr8	76160581	76308573	STRG.55623.4	-	76160581,76306337,76308452	76163014,76306467,76308573	0.550000
heart_male_adult_34_years	chr7	80524846	80524872	80524846	+	RAMPAGE_only	35	38	96	3.540599	5.942280	chr7	80524761	80524908	LTR|ERV1|LTR38B	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.677083
heart_male_adult_34_years	chr12	83472431	83472432	83472431	-	High_confidence	77	78	91	3.356192	4.731898	chr12	83472101	83472741	LTR|ERVL-MaLR|MLT1E2	+	chr12	83457678	83472510	STRG.76803.1	-	83457678,83472259	83458952,83472510	0.956044
heart_male_adult_34_years	chr21	8817798	8817799	8817798	+	RAMPAGE_only	7	7	8	0.295050	2.807355	chr21	8817416	8819072	LINE|L1|L1PB	-	chr21	8849990	8883259	STRG.104132.2	+	8849990,8857287,8859996,8860923,8866870,8866990,8873016,8877130,8878663,8880011,8882478	8850122,8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878858,8880928,8883259	0.875000
heart_male_adult_34_years	chrX	5726324	5726325	5726324	-	High_confidence	116	124	144	5.310898	5.236238	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5717913	5726338	STRG.106982.1	-	5717913,5725929	5719872,5726338	0.972222
heart_male_adult_34_years	chr5	178267392	178267403	178267392	-	RAMPAGE_only	8	8	25	0.922031	4.175736	chr5	178267373	178267564	SINE|MIR|MIR	-	chr5	178237619	178306934	COL23A1|ENST00000407622.2	-	178237619,178239140,178242041,178242340,178245941,178246253,178246390,178247525,178247774,178248191,178249116,178250060,178252543,178254948,178256352,178256865,178257522,178259720,178261721,178262216,178263207,178267306,178268729,178270336,178306874	178238700,178239179,178242128,178242394,178245968,178246307,178246453,178247552,178247831,178248254,178249206,178250105,178252597,178255026,178256397,178256928,178257567,178259747,178261748,178262252,178263324,178267333,178268756,178270372,178306934	0.720000
heart_male_adult_34_years	chr1	63487956	63487959	63487956	+	High_confidence	27	27	64	2.360399	4.961817	chr1	63487767	63487999	DNA|TcMar-Tigger|Tigger3b	-	chr1	63487947	63495085	STRG.2973.2	+	63487947,63494164	63488277,63495085	0.640625
heart_male_adult_34_years	chr7	102040717	102040758	102040728	+	RAMPAGE_only	12	14	46	1.696537	4.637586	chr7	102040765	102040912	SINE|MIR|MIR3	+	chr7	102097477	102125778	CUX1|ENST00000465461.7	+	102097477,102104335,102111697,102115206,102125527	102097501,102104459,102111774,102115273,102125778	0.739130
heart_male_adult_34_years	chr6	6739282	6739283	6739282	-	High_confidence	7	7	7	0.258169	2.521641	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6696493	6739330	STRG.41467.4	-	6696493,6710871,6711696,6734870	6705078,6710981,6711858,6739330	1.000000
heart_male_adult_34_years	chr9	113522476	113522483	113522482	+	High_confidence	5	5	14	0.516337	3.238901	chr9	113522277	113522493	SINE|MIR|MIRc	-	chr9	113522482	113536918	RGS3|ENST00000496264.1	+	113522482,113522929,113529220,113536795	113522660,113523041,113529264,113536918	0.642857
heart_male_adult_34_years	chr13	43053971	43054029	43053971	+	RAMPAGE_only	144	156	776	28.619839	5.437589	chr13	43052716	43054750	LINE|L1|L1PB1	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.975515
heart_male_adult_34_years	chr1	214278889	214278924	214278911	-	RAMPAGE_only	106	111	486	17.924281	6.835731	chr1	214278781	214279013	LINE|L2|L2c	+	chr1	214254089	214281457	STRG.8675.2	-	214254089,214264935,214278713	214262964,214264975,214281457	0.956790
heart_male_adult_34_years	chr21	33931224	33931225	33931224	+	High_confidence	7	7	9	0.331931	2.947703	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.888889
heart_male_adult_34_years	chr16	58421251	58421323	58421322	+	High_confidence	216	216	458	16.891606	6.884721	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421338	58462470	LINC02137|ENST00000561906.5	+	58421338,58435691,58461470,58462153	58421421,58435823,58461582,58462470	0.510917
heart_male_adult_34_years	chr15	82143657	82143733	82143715	-	RAMPAGE_only	5	5	36	1.327724	4.704511	chr15	82143509	82143849	LINE|CR1|L3	+	chr15	82130219	82262528	EFL1|NM_001322845.1	-	82130219,82138657,82151464,82157712,82163852,82214716,82219651,82220077,82225164,82227449,82228190,82229033,82230847,82238306,82240417,82241269,82252690,82259087,82261687,82262136	82130561,82138842,82152423,82157860,82163984,82214855,82219818,82220229,82225264,82227572,82228327,82229110,82230971,82238521,82240555,82241403,82252775,82259155,82261797,82262528	0.972222
heart_male_adult_34_years	chr2	61359852	61359883	61359862	-	RAMPAGE_only	17	17	31	1.143318	4.039212	chr2	61359779	61360055	SINE|Alu|AluSx1	-	chr2	61348271	61470690	USP34|ENST00000453133.1	-	61348271,61348755,61349249,61350259,61350567,61370320,61370497,61378362,61380168,61383268,61394852,61420745,61470649	61348480,61348886,61349285,61350389,61350693,61370413,61370579,61378424,61380361,61383336,61395002,61420833,61470690	1.000000
heart_male_adult_34_years	chr3	183630113	183630136	183630135	+	RAMPAGE_only	3	3	7	0.258169	2.521641	chr3	183630102	183630275	LTR|ERV1?|LTR103b_Mam	+	chr3	183635567	183679478	KLHL24|ENST00000242810.10	+	183635567,183643479,183650295,183663457,183664920,183671033,183672295,183679085	183635793,183643542,183651276,183663642,183665039,183671222,183672484,183679478	0.857143
heart_male_adult_34_years	chr13	54572230	54572235	54572234	+	High_confidence	24	24	41	1.512131	4.663231	chr13	54572234	54573121	LINE|L1|L1HS	+	chr13	54572234	54582668	STRG.79962.1	+	54572234,54581570	54572379,54582668	0.853659
heart_male_adult_34_years	chr21	28048446	28048447	28048446	+	High_confidence	182	186	208	7.671297	4.426788	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.942308
heart_male_adult_34_years	chr8	32927967	32928001	32927976	+	High_confidence	53	58	251	9.257190	6.170965	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927931	33044802	STRG.54561.1	+	32927931,32996200,33041634,33044366	32928093,32996316,33041771,33044802	0.521912
heart_male_adult_34_years	chr1	202452364	202452406	202452405	-	High_confidence	5	5	30	1.106437	4.319903	chr1	202451192	202452602	Retroposon|SVA|SVA_D	-	chr1	202451220	202452489	STRG.8219.1	-	202451220	202452489	0.933333
heart_male_adult_34_years	chr20	20088993	20089033	20089012	-	High_confidence	5	7	24	0.885150	3.823068	chr20	20088660	20089017	LINE|RTE-X|L4_B_Mam	-	chr20	20080568	20089220	STRG.102419.1	-	20080568,20088366,20088851	20080997,20088435,20089220	0.625000
heart_male_adult_34_years	chr4	79493261	79493283	79493274	+	High_confidence	3	3	9	0.331931	2.750000	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.777778
heart_male_adult_34_years	chr4	98839495	98839500	98839499	+	High_confidence	3	3	8	0.295050	2.521641	chr4	98839167	98839633	LTR|ERVL-MaLR|MLT1E2	+	chr4	98839706	98843294	STRG.31043.1	+	98839706	98843294	0.750000
heart_male_adult_34_years	chr14	30690415	30690450	30690449	+	RAMPAGE_only	2	2	7	0.258169	2.584963	chr14	30684809	30690837	LINE|L1|L1HS	-	chr14	30676125	30705885	SCFD1|ENST00000554486.1	+	30676125,30694772,30700187,30702295,30705822	30676633,30694869,30700258,30702375,30705885	0.714286
heart_male_adult_34_years	chr15	30624357	30624368	30624357	+	High_confidence	8	8	22	0.811387	3.241446	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.818182
heart_male_adult_34_years	chr9	92536601	92536602	92536601	-	High_confidence	17	17	17	0.626981	3.410417	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.941176
heart_male_adult_34_years	chr15	62894550	62894597	62894596	+	High_confidence	16	16	54	1.991587	4.580510	chr15	62894534	62894826	SINE|Alu|AluSx3	+	chr15	62894560	62899659	STRG.87395.1	+	62894560,62898650	62894717,62899659	0.962963
heart_male_adult_34_years	chr15	44732749	44732750	44732749	+	RAMPAGE_only	8	8	8	0.295050	2.500000	chr15	44732534	44732858	LTR|ERV1|MER49	+	chr15	44729141	44734000	STRG.86665.6	+	44729141,44731374	44729552,44734000	1.000000
heart_male_adult_34_years	chr4	13840904	13840952	13840904	-	High_confidence	53	68	279	10.289865	5.723076	chr4	13840869	13840990	SINE|MIR|MIRb	+	chr4	13764524	13840979	STRG.28236.3	-	13764524,13838595,13839433	13766960,13838736,13840979	0.813620
heart_male_adult_34_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	47	48	48	1.770299	4.954449	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888512	77933384	NEXN|ENST00000401035.7	+	77888512,77916054,77917959,77918124,77925187,77926413,77926715,77929315,77933281	77888759,77916133,77918038,77918273,77925229,77926611,77926892,77929504,77933384	0.708333
heart_male_adult_34_years	chr17	20921012	20921045	20921012	+	High_confidence	3	3	10	0.368812	3.121928	chr17	20920944	20921033	LINE|L2|L2a	+	chr17	20921044	20930046	CCDC144NL-AS1|ENST00000443508.6	+	20921044,20924358,20929430	20921169,20924833,20930046	1.000000
heart_male_adult_34_years	chr1	31376356	31376357	31376356	-	High_confidence	186	195	195	7.191841	4.684131	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.871795
heart_male_adult_34_years	chr16	20674497	20674498	20674497	+	High_confidence	1038	1054	1114	41.085697	5.276643	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.934470
heart_male_adult_34_years	chr8	38825339	38825367	38825366	+	RAMPAGE_only	2	3	6	0.221287	2.584963	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.833333
heart_male_adult_34_years	chr6	20334376	20334392	20334391	-	High_confidence	7	7	22	0.811387	3.748995	chr6	20334196	20334750	LTR|ERVL-MaLR|MLT1K	-	chr6	20331315	20334500	STRG.41863.1	-	20331315,20334133	20331525,20334500	0.818182
heart_male_adult_34_years	chr2	3533882	3533935	3533934	-	High_confidence	302	320	802	29.578751	6.528492	chr2	3533849	3534784	LTR|ERV1|LTR27E	+	chr2	3531983	3533782	AC108488.1|ENST00000439547.5	-	3531983,3533107,3533710	3532310,3533190,3533782	0.957606
heart_male_adult_34_years	chr7	158863388	158863542	158863400	+	RAMPAGE_only	116	182	956	35.258461	6.627452	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.971757
heart_male_adult_34_years	chr7	107580245	107580267	107580264	+	High_confidence	3296	3306	14974	552.259623	6.758280	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.933418
heart_male_adult_34_years	chr14	44912681	44912682	44912681	-	High_confidence	12	12	12	0.442575	2.688722	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44831505	44912638	STRG.82882.1	-	44831505,44899229,44911756,44912452	44831690,44899313,44911860,44912638	0.916667
heart_male_adult_34_years	chr11	128565299	128565328	128565299	+	High_confidence	42	43	234	8.630209	6.041577	chr11	128565090	128565469	LTR|ERVL-MaLR|MLT1A1	+	chr11	128565287	128584229	STRG.72909.1	+	128565287,128565820,128582996	128565391,128566456,128584229	0.846154
heart_male_adult_34_years	chr4	128428081	128428117	128428116	+	High_confidence	4	4	8	0.295050	2.750000	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428069	128519394	AC108062.1|ENST00000511497.5	+	128428069,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519394	0.500000
heart_male_adult_34_years	chr15	71437401	71437402	71437401	+	RAMPAGE_only	4	4	7	0.258169	2.521641	chr15	71437357	71437665	LTR|ERV1|LTR48B	-	chr15	71547201	71783383	THSD4|NM_001286429.1	+	71547201,71660529,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71771063,71777231	71547481,71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71771208,71783383	0.857143
heart_male_adult_34_years	chr3	14521287	14521325	14521287	-	RAMPAGE_only	7	7	19	0.700743	3.932138	chr3	14521091	14521498	LINE|L2|L2a	+	chr3	14520691	14525983	GRIP2|ENST00000422481.5	-	14520691,14525436,14525850	14524538,14525572,14525983	0.526316
heart_male_adult_34_years	chr10	92826781	92826851	92826850	+	High_confidence	13	16	53	1.954705	4.583465	chr10	92826510	92827023	LINE|L2|L2a	-	chr10	92826830	93059494	EXOC6|NM_001013848.3	+	92826830,92834712,92893348,92894793,92894929,92899598,92909426,92915757,92919981,92928338,92934143,92934309,92935813,92940726,92948273,92952272,92954629,92955579,92974052,92997473,93014193,93056923,93058222	92826944,92834824,92893520,92894841,92895020,92899644,92909631,92915913,92920050,92928422,92934190,92934430,92935885,92940824,92948379,92952382,92954741,92955714,92974232,92997615,93014267,93057036,93059494	0.867925
heart_male_adult_34_years	chr2	63827822	63827823	63827822	-	High_confidence	484	487	534	19.694580	7.312680	chr2	63827753	63828092	LTR|ERVL?|LTR55	-	chr2	63673071	63827841	STRG.12743.2	-	63673071,63711496,63813621,63827621	63678253,63711591,63813707,63827841	0.531835
heart_male_adult_34_years	chr5	16137419	16137420	16137419	+	RAMPAGE_only	11	11	16	0.590100	3.640224	chr5	16137174	16137534	LTR|ERVL-MaLR|THE1B	+	chr5	16129177	16150722	STRG.34868.2	+	16129177	16150722	0.937500
heart_male_adult_34_years	chr2	26268570	26268601	26268570	+	RAMPAGE_only	4	4	13	0.479456	3.392747	chr2	26268173	26268864	LINE|L1|L1MD3	+	chr2	26261020	26290464	HADHB|ENST00000545822.2	+	26261020,26263379,26269952,26273650,26277072,26278613,26279134,26279993,26282844,26283003,26284116,26284882,26285406,26289917	26261063,26263479,26269997,26273750,26277160,26278801,26279315,26280115,26282924,26283051,26284204,26284957,26285571,26290464	0.923077
heart_male_adult_34_years	chr13	49495593	49495610	49495593	+	High_confidence	2	2	8	0.295050	2.807355	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495609	49528992	PHF11|NM_001040443.2	+	49495609,49506634,49513058,49518017,49520893,49522042,49523174,49524084,49526386,49528510	49496095,49506756,49513166,49518151,49520940,49522107,49523241,49524216,49526458,49528992	0.875000
heart_male_adult_34_years	chr15	50767776	50767823	50767776	+	High_confidence	11	11	44	1.622774	4.896821	chr15	50767638	50768178	LINE|L2|L2c	-	chr15	50767784	50771326	STRG.86856.1	+	50767784	50771326	0.977273
heart_male_adult_34_years	chr12	19037007	19037031	19037030	+	High_confidence	252	303	513	18.920074	5.350159	chr12	19036914	19037352	LTR|ERV1|LOR1b	-	chr12	19036989	19051762	STRG.74187.1	+	19036989	19051762	0.980507
heart_male_adult_34_years	chr2	28165286	28165304	28165303	+	RAMPAGE_only	64	97	159	5.864116	4.721928	chr2	28165020	28165437	LINE|L2|L2b	-	chr2	28131344	28338901	STRG.11034.12	+	28131344,28237201,28241322,28244779,28298337,28338449	28165327,28237301,28241393,28244862,28298491,28338901	0.867925
heart_male_adult_34_years	chr19	34860565	34860577	34860575	-	RAMPAGE_only	5	7	12	0.442575	3.251629	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34816153	34832869	LOC400685|NR_033982.1	-	34816153,34818586,34829163,34830405,34832329,34832724	34817490,34818766,34829253,34830526,34832536,34832869	0.500000
heart_male_adult_34_years	chr11	47339650	47339767	47339650	-	RAMPAGE_only	42	81	277	10.216102	4.921893	chr11	47339580	47339635	SINE|MIR|MIR3	-	chr11	47331396	47352702	MYBPC3|ENST00000545968.5	-	47331396,47331844,47332071,47332565,47332813,47333193,47333556,47333921,47335041,47335876,47337390,47337689,47338519,47339323,47339650,47341002,47341137,47341990,47342577,47342829,47343020,47343259,47343491,47346206,47346626,47347026,47347425,47347650,47347856,47348423,47349773,47350013,47350501,47351238,47352622	47331716,47331881,47332258,47332702,47332973,47333333,47333752,47334010,47335209,47336011,47337579,47337794,47338679,47339404,47339790,47341032,47341244,47342156,47342744,47342935,47343145,47343262,47343624,47346370,47346644,47347029,47347479,47347680,47347905,47348541,47349922,47350112,47350615,47351505,47352702	0.960289
heart_male_adult_34_years	chr2	182056122	182056170	182056156	-	High_confidence	58	58	193	7.118078	6.587755	chr2	182055736	182056501	LINE|L1|L1MEi	-	chr2	182049981	182056213	STRG.16765.2	-	182049981,182052601,182055415	182051995,182052685,182056213	0.937824
heart_male_adult_34_years	chr21	28090313	28090410	28090339	+	High_confidence	13	16	67	2.471043	4.115603	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.985075
heart_male_adult_34_years	chr8	107336500	107336517	107336516	-	High_confidence	7	8	14	0.516337	3.085055	chr8	107336384	107336688	SINE|Alu|AluY	+	chr8	107249481	107336515	ANGPT1|NM_001314051.1	-	107249481,107264220,107284681,107293935,107303239,107321895,107336149,107336383	107252015,107264351,107284848,107294037,107303367,107322128,107336271,107336515	0.928571
heart_male_adult_34_years	chr15	77513457	77513480	77513457	+	High_confidence	5	6	14	0.516337	3.085055	chr15	77513454	77513732	LTR|ERVL-MaLR|MLT1B	-	chr15	77512682	77520122	STRG.88060.13	+	77512682,77517275	77513582,77520122	0.857143
heart_male_adult_34_years	chr6	118512058	118512059	118512058	-	RAMPAGE_only	16	16	20	0.737625	3.784184	chr6	118511980	118512463	LINE|L1|L1MEc	+	chr6	118460771	118567013	STRG.45642.6	-	118460771,118469071,118470536,118479870,118480395,118481778,118483705,118491685,118523801,118537523	118466564,118469303,118470644,118479921,118480513,118481933,118483858,118511415,118523920,118567013	0.650000
heart_male_adult_34_years	chr3	40290554	40290562	40290561	-	RAMPAGE_only	23	24	68	2.507924	5.093954	chr3	40290526	40291622	LTR|ERV1|LTR27E	-	chr3	40219520	40309461	STRG.21599.1	-	40219520,40248183,40290446,40309322	40242486,40248471,40301396,40309461	0.558824
heart_male_adult_34_years	chr9	62897400	62897441	62897430	+	High_confidence	16	16	45	1.659656	4.739091	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62907260	STRG.60079.2	+	62897448	62907260	0.933333
heart_male_adult_34_years	chrX	15607186	15607208	15607186	-	High_confidence	22	24	67	2.471043	5.288910	chrX	15606866	15607460	LTR|ERV1|LTR10C	+	chrX	15538846	15607193	STRG.107409.2	-	15538846,15564023,15566252,15567725,15570294,15571623,15572200,15573366,15575665,15578088,15581220,15585474,15587752,15589343,15591712,15592228,15594844,15600725,15607136	15562013,15564218,15566369,15567826,15570353,15571796,15572323,15573465,15575810,15578315,15581390,15585572,15587858,15589456,15591856,15592322,15595003,15600917,15607193	0.791045
heart_male_adult_34_years	chr3	114759249	114759277	114759276	-	High_confidence	20	22	39	1.438368	4.681881	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.769231
heart_male_adult_34_years	chr9	73446498	73446521	73446520	+	High_confidence	5	7	13	0.479456	3.392747	chr9	73446445	73446737	LINE|L1|L1MEf	-	chr9	73445640	73550514	STRG.60533.3	+	73445640,73465113	73465079,73550514	1.000000
heart_male_adult_34_years	chr4	11737290	11737291	11737290	+	High_confidence	26	31	34	1.253962	4.219528	chr4	11737098	11737472	LTR|ERVL-MaLR|THE1D	+	chr4	11737193	11738835	STRG.28163.1	+	11737193	11738835	0.882353
heart_male_adult_34_years	chr15	42404759	42404761	42404759	+	High_confidence	3	5	8	0.295050	2.807355	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404778	42412317	CAPN3|NM_173090.1	+	42404778,42405925,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42405943,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412317	0.500000
heart_male_adult_34_years	chr12	91179462	91179549	91179462	-	High_confidence	2237	2350	8606	317.399914	7.428128	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.501627
heart_male_adult_34_years	chr15	92678201	92678219	92678212	-	High_confidence	24	39	74	2.729211	4.872924	chr15	92678051	92678466	LTR|ERVL-MaLR|MSTC	-	chr15	92619301	92678593	STRG.88840.8	-	92619301,92630213,92678129	92619459,92630345,92678593	0.581081
heart_male_adult_34_years	chr19	41447813	41447827	41447826	-	High_confidence	28	30	115	4.241342	5.511600	chr19	41447559	41447855	SINE|Alu|AluSp	+	chr19	41446519	41447826	STRG.100514.11	-	41446519	41447826	0.904348
heart_male_adult_34_years	chr2	218569961	218570012	218570011	-	High_confidence	9	9	33	1.217081	4.538910	chr2	218569814	218570128	LINE|L2|L2a	+	chr2	218569493	218569974	STRG.18256.1	-	218569493	218569974	0.878788
heart_male_adult_34_years	chr14	101823738	101823758	101823738	+	RAMPAGE_only	4	4	16	0.590100	3.189898	chr14	101823598	101823757	SINE|MIR|MIRc	-	chr14	101809904	101906647	PPP2R5C|ENST00000557095.5	+	101809904,101856685,101882160,101883256,101883431,101890236,101892999,101894506,101901718,101906401	101810036,101856885,101882271,101883349,101883562,101890296,101893108,101894560,101901889,101906647	0.500000
heart_male_adult_34_years	chr6	128886512	128886542	128886541	+	RAMPAGE_only	3	4	9	0.331931	2.503258	chr6	128885901	128886968	LINE|CR1|L3	+	chr6	128883196	129516563	STRG.46645.2	+	128883196,128895642,129049917,129059783,129098172,129143900,129146958,129148978,129150396,129165575,129177705,129190204,129192679,129250111,129252083,129260710,129266861,129270623,129280060,129287846,129291613,129292802,129297684,129300735,129312860,129314654,129315475,129315761,129316037,129320537,129328277,129342342,129349297,129353163,129366218,129369891,129383121,129391490,129393044,129401223,129402323,129403820,129427751,129438645,129440815,129443062,129445666,129452987,129454154,129456334,129460199,129464289,129465144,129473213,129475389,129478692,129481262,129486473,129491900,129492314,129502658,129503090,129505199,129507488,129512362,129514372,129516189	128895340,128916766,129050088,129059896,129098415,129144080,129147048,129149096,129154683,129165675,129177866,129190345,129192853,129250213,129252295,129260822,129267219,129270751,129280147,129288058,129291720,129293066,129297865,129300872,129313097,129314798,129315655,129315950,129316171,129320655,129328412,129342467,129349384,129353357,129366361,129369990,129383233,129391653,129393255,129401340,129402487,129403959,129427854,129438762,129440998,129443068,129445821,129453131,129454288,129456494,129460324,129464452,129465289,129473352,129475401,129478813,129481439,129486622,129492077,129492483,129502771,129503280,129505355,129507642,129512493,129514595,129516563	1.000000
heart_male_adult_34_years	chr6	170126637	170126657	170126656	-	High_confidence	10	12	25	0.922031	3.970176	chr6	170126572	170126709	LTR|ERVL-MaLR|MLT1F	+	chr6	170122582	170126652	STRG.48039.1	-	170122582	170126652	0.840000
heart_male_adult_34_years	chr16	29293281	29293329	29293328	+	High_confidence	6	6	17	0.626981	3.452820	chr16	29293232	29293365	LTR|ERVL-MaLR|MLT1M	-	chr16	29293293	29331721	STRG.90776.8	+	29293293,29302286,29312349,29320927,29326346	29293393,29302388,29312589,29321095,29331721	0.941176
heart_male_adult_34_years	chr8	53523609	53523625	53523624	-	High_confidence	4	4	14	0.516337	3.324863	chr8	53523216	53523628	LTR|ERV1|HERVE_a-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.714286
heart_male_adult_34_years	chr19	571725	571728	571725	-	High_confidence	4	4	8	0.295050	2.521641	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567310	571734	AC009005.1|ENST00000590292.5	-	567310,571439,571696	567624,571596,571734	0.750000
heart_male_adult_34_years	chr8	12522683	12522703	12522683	+	RAMPAGE_only	6	7	14	0.516337	3.546594	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12520685	12572302	STRG.53912.3	+	12520685,12530942,12565885	12522846,12531031,12572302	0.928571
heart_male_adult_34_years	chr3	197299271	197299317	197299316	-	High_confidence	5	5	18	0.663862	3.292770	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.944444
heart_male_adult_34_years	chr2	70257706	70257707	70257706	+	High_confidence	6	7	7	0.258169	2.584963	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.714286
heart_male_adult_34_years	chr19	12800944	12800954	12800944	-	High_confidence	5	5	11	0.405694	3.121928	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.909091
heart_male_adult_34_years	chr9	121280959	121281018	121281008	+	High_confidence	6	6	26	0.958912	4.183465	chr9	121280857	121281205	LINE|CR1|CR1-3_Croc	+	chr9	121281471	121321311	GSN|ENST00000483960.5	+	121281471,121282438,121283318,121297765,121300055,121301962,121318734,121321267	121281562,121282550,121283392,121297842,121300126,121302149,121318880,121321311	0.730769
heart_male_adult_34_years	chr6	4346920	4346944	4346920	-	High_confidence	3	3	12	0.442575	3.095795	chr6	4346798	4346936	SINE|MIR|MIRb	-	chr6	4345742	4347037	AL159166.1|ENST00000437430.2	-	4345742,4346632,4347009	4345806,4346869,4347037	0.833333
heart_male_adult_34_years	chr3	123402040	123402076	123402075	-	RAMPAGE_only	8	10	18	0.663862	3.616875	chr3	123402013	123402284	LINE|CR1|X7A_LINE	+	chr3	123332594	123404283	ADCY5|ENST00000476455.1	-	123332594,123347781,123352431,123367899,123404203	123332675,123347903,123352581,123368046,123404283	0.777778
heart_male_adult_34_years	chr13	27445105	27445116	27445115	-	RAMPAGE_only	5	6	12	0.442575	2.845351	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.916667
heart_male_adult_34_years	chr4	141333512	141333582	141333581	+	High_confidence	12	14	89	3.282430	5.719731	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141332942	141733123	STRG.32710.2	+	141332942,141580370,141656185,141719365,141720468,141721923,141727939,141729846,141732737	141351501,141580563,141689035,141719476,141720566,141722008,141727984,141729984,141733123	0.752809
heart_male_adult_34_years	chr9	106450815	106450822	106450821	+	High_confidence	429	524	890	32.824300	6.959377	chr9	106450433	106450967	LTR|ERVL-MaLR|MLT1G1	+	chr9	106450815	106623103	STRG.61836.1	+	106450815,106500356,106558471,106588376,106603755	106450888,106500505,106558583,106588464,106623103	0.764045
heart_male_adult_34_years	chr4	184768317	184768363	184768328	-	RAMPAGE_only	3	3	18	0.663862	3.616875	chr4	184768056	184768306	SINE|MIR|MIRc	-	chr4	184755600	184766702	ACSL1|ENST00000503407.5	-	184755600,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621	184757265,184757706,184757920,184760500,184762493,184763255,184764925,184765986,184766702	0.722222
heart_male_adult_34_years	chr19	45450739	45450758	45450757	-	High_confidence	6	7	13	0.479456	2.855389	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.923077
heart_male_adult_34_years	chr6	130978943	130978944	130978943	-	High_confidence	6	6	8	0.295050	2.521641	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.500000
heart_male_adult_34_years	chr1	217526823	217526839	217526838	-	RAMPAGE_only	4	5	8	0.295050	3.000000	chr1	217526748	217527092	DNA|hAT-Charlie|MER1A	+	chr1	217426991	217631082	GPATCH2|ENST00000366935.7	-	217426991,217449248,217491679,217498355,217514821,217610320,217610888,217614140,217619782,217630915	217431365,217449337,217491750,217498395,217514889,217610400,217611071,217614202,217620499,217631082	0.500000
heart_male_adult_34_years	chr14	38948236	38948270	38948245	-	High_confidence	29	29	96	3.540599	5.614561	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	0.802083
heart_male_adult_34_years	chr2	37020221	37020281	37020224	-	RAMPAGE_only	47	51	305	11.248777	6.340658	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	37008167	37013995	HEATR5B|ENST00000471051.1	-	37008167,37013840	37008848,37013995	0.803279
heart_male_adult_34_years	chr7	123602850	123602874	123602873	+	RAMPAGE_only	11	11	21	0.774506	4.021928	chr7	123602835	123603070	SINE|MIR|MIR	+	chr7	123601866	123637867	STRG.52187.2	+	123601866,123604031,123608593,123612275,123614500,123616220,123616363,123617578,123624568,123627109,123628863,123629965,123636808	123601914,123604212,123608654,123612400,123614609,123616273,123616495,123617737,123624814,123627281,123629434,123630119,123637867	0.952381
heart_male_adult_34_years	chr15	52569721	52569722	52569721	-	High_confidence	10	10	10	0.368812	2.646439	chr15	52569688	52569809	LINE|L2|L2	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	1.000000
heart_male_adult_34_years	chr6	123419016	123419017	123419016	-	RAMPAGE_only	11	11	17	0.626981	3.499228	chr6	123419006	123419359	LTR|ERVL|LTR47A	-	chr6	123216338	123636909	STRG.46007.1	-	123216338,123221486,123224092,123252411,123255080,123255866,123259623,123260611,123265317,123267706,123269848,123271138,123272963,123273336,123274640,123278317,123279055,123316456,123331878,123337618,123352538,123366134,123375604,123377715,123377865,123381369,123382117,123388521,123393623,123438062,123438943,123464905,123497192,123498448,123499815,123512302,123516140,123530505,123547339,123548453,123570922,123636753	123218740,123221522,123224131,123252435,123255125,123255902,123259662,123260638,123265338,123267751,123269866,123271186,123273011,123273363,123274670,123278347,123279082,123316495,123331929,123337669,123352586,123366182,123375631,123377742,123377898,123381390,123382147,123388551,123393677,123438122,123439003,123464983,123497252,123499545,123503901,123512362,123516206,123530565,123547372,123548612,123571132,123636909	0.647059
heart_male_adult_34_years	chr6	85684396	85684426	85684400	+	High_confidence	32	34	191	7.044316	5.693269	chr6	85684245	85684930	LINE|L2|L2	-	chr6	85684391	85696934	STRG.44502.1	+	85684391	85696934	0.853403
heart_male_adult_34_years	chr12	121582255	121582286	121582285	-	RAMPAGE_only	2	2	7	0.258169	2.807355	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121429095	121581015	KDM2B|NM_032590.4	-	121429095,121439856,121440815,121441069,121442156,121442991,121443679,121444011,121444449,121445274,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549459,121574546,121575780,121578801,121580785	121430469,121440075,121440977,121441233,121442836,121443030,121443793,121444272,121444536,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548983,121549638,121574593,121575859,121578946,121581015	0.714286
heart_male_adult_34_years	chr6	79631273	79631329	79631328	+	High_confidence	45	45	158	5.827235	5.987590	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.974684
heart_male_adult_34_years	chr6	169654731	169654734	169654731	-	RAMPAGE_only	3	3	7	0.258169	2.521641	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169582645	169665092	STRG.47949.2	-	169582645,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197,169651929,169658275,169659085,169659450,169660662,169662303,169663840,169664165	169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649275,169652008,169658358,169659207,169659518,169660766,169662424,169663878,169665092	0.571429
heart_male_adult_34_years	chr22	42644615	42644643	42644615	-	High_confidence	21	23	128	4.720798	4.900492	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	0.968750
heart_male_adult_34_years	chr9	39809803	39809865	39809852	-	High_confidence	15	15	110	4.056936	5.015025	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803265	39810013	STRG.59837.2	-	39803265,39809485,39809730	39803859,39809615,39810013	0.890909
heart_male_adult_34_years	chr2	159754068	159754094	159754068	+	RAMPAGE_only	2	2	8	0.295050	2.807355	chr2	159753563	159755683	LINE|L2|L2c	-	chr2	159752489	159767960	MARCH7|ENST00000420397.1	+	159752489,159759225,159762879,159767283	159752571,159759335,159762993,159767960	0.500000
heart_male_adult_34_years	chrX	44314281	44314312	44314307	-	High_confidence	29	45	111	4.093817	5.895403	chrX	44314142	44314275	LINE|L1|L1ME3Cz	-	chrX	44143383	44314304	STRG.107950.1	-	44143383,44163921,44176291,44178366,44229648,44232480,44235304,44242120,44248271,44248802,44250193,44261074,44272685,44276972,44312567,44314196	44148896,44164027,44176384,44178564,44229779,44232677,44235447,44242289,44248410,44248916,44250445,44261298,44272836,44277093,44312756,44314304	0.756757
heart_male_adult_34_years	chr4	127655803	127655833	127655803	+	RAMPAGE_only	5	5	11	0.405694	2.646439	chr4	127650220	127656245	LINE|L1|L1PA2	-	chr4	127632965	127716479	INTU|ENST00000503952.5	+	127632965,127643520,127656635,127663380,127669035,127674123,127684408,127685441,127687740,127700009,127704227,127705590,127706486,127708570,127710912,127713935,127716324	127633180,127644056,127656721,127663584,127669154,127674213,127684486,127685569,127687867,127700063,127704290,127705812,127706969,127708668,127711102,127714093,127716479	0.909091
heart_male_adult_34_years	chr6	29965021	29965072	29965071	+	High_confidence	117	134	440	16.227744	6.687309	chr6	29965033	29965118	LTR|ERVL|LTR18B	+	chr6	29965027	29965684	STRG.42521.1	+	29965027	29965684	0.993182
heart_male_adult_34_years	chr12	39415551	39415562	39415551	-	RAMPAGE_only	6	6	16	0.590100	2.549255	chr12	39415230	39415556	SINE|Alu|AluY	-	chr12	39293228	39442943	KIF21A|ENST00000636569.1	-	39293228,39301479,39302964,39304820,39307564,39309585,39311416,39315228,39315931,39318072,39319905,39322667,39325838,39326263,39330241,39330745,39331689,39332213,39332590,39332892,39333211,39337095,39340164,39340905,39341504,39342033,39351776,39356831,39357247,39358177,39363097,39366349,39367029,39367882,39369728,39370038,39442926	39294517,39301679,39303135,39304938,39307729,39309766,39311553,39315243,39315970,39318201,39320013,39322882,39325893,39326324,39330262,39330911,39331791,39332408,39332744,39333107,39333280,39337203,39340364,39341094,39341622,39342124,39351980,39356895,39357437,39358373,39363213,39366517,39367164,39368032,39369911,39370261,39442943	0.875000
heart_male_adult_34_years	chr5	78388015	78388042	78388041	+	RAMPAGE_only	3	3	11	0.405694	3.459432	chr5	78388024	78388215	LINE|L1|L1PB1	-	chr5	78360804	78416588	SCAMP1|ENST00000510030.2	+	78360804,78388836,78415519,78416540	78361056,78388914,78415618,78416588	0.636364
heart_male_adult_34_years	chr4	62134232	62134299	62134235	+	High_confidence	45	46	323	11.912639	4.826574	chr4	62133506	62134415	LTR|ERVL|MER21A	+	chr4	62133723	62205054	STRG.29824.7	+	62133723,62161758	62137823,62205054	0.984520
heart_male_adult_34_years	chrY	20575144	20575145	20575144	-	RAMPAGE_only	9	9	11	0.405694	3.277613	chrY	20575027	20575133	LINE|L2|L2b	-	chrY	20414776	20570519	STRG.111907.1	-	20414776,20466427,20468188,20469871,20507351,20518270,20524267	20465822,20466667,20468248,20469981,20507456,20521300,20570519	0.545455
heart_male_adult_34_years	chr3	44439896	44439917	44439896	-	RAMPAGE_only	4	5	23	0.848268	3.447262	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431719	44477670	ZNF445|ENST00000396077.7	-	44431719,44449512,44450446,44450867,44451313,44455120,44458243,44477590	44448739,44449623,44450573,44450962,44451482,44455696,44458364,44477670	0.913043
heart_male_adult_34_years	chr10	95437797	95437816	95437815	-	RAMPAGE_only	39	39	105	3.872530	5.394778	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.723810
heart_male_adult_34_years	chr7	112995595	112995630	112995629	-	High_confidence	1000	1015	3449	127.203382	7.682726	chr7	112995411	112995725	LINE|L2|L2	+	chr7	112954645	112995634	STRG.51855.1	-	112954645,112956521,112973604,112977143,112980045,112982986,112986535,112995567	112954768,112956711,112973672,112977199,112980164,112983141,112986664,112995634	0.728037
heart_male_adult_34_years	chr6	8652258	8652275	8652274	+	High_confidence	3	3	9	0.331931	2.500000	chr6	8652094	8652454	LTR|ERVL-MaLR|MLT1A	+	chr6	8652261	8653814	AL591485.1|ENST00000646741.1	+	8652261,8653544	8653136,8653814	0.777778
heart_male_adult_34_years	chr20	37699436	37699451	37699436	+	RAMPAGE_only	5	7	13	0.479456	2.918296	chr20	37699323	37699502	SINE|MIR|MIRc	-	chr20	37694061	37872117	CTNNBL1|ENST00000628103.2	+	37694061,37727301,37732878,37737377,37746467,37757558,37765196,37767952,37777344,37777653,37779186,37802866,37840101,37842338,37859898,37860271,37871924	37694152,37727402,37733067,37737484,37746607,37757656,37765290,37768044,37777417,37777712,37779335,37803048,37840199,37842419,37860036,37860344,37872117	0.923077
heart_male_adult_34_years	chr2	121902533	121902534	121902533	+	High_confidence	6	7	9	0.331931	2.750000	chr2	121902488	121902606	LINE|L2|L2a	-	chr2	121902344	121946169	STRG.14964.1	+	121902344,121944333	121902989,121946169	0.777778
heart_male_adult_34_years	chr10	17617764	17617797	17617785	-	High_confidence	4	6	15	0.553219	3.189898	chr10	17617759	17617913	SINE|Alu|FRAM	-	chr10	17589031	17617377	HACD1|ENST00000361271.7	-	17589031,17594204,17599289,17603559,17603725,17603929,17617082	17590446,17594383,17599411,17603648,17603744,17604047,17617377	0.933333
heart_male_adult_34_years	chr6	6734897	6734926	6734925	-	RAMPAGE_only	5	5	9	0.331931	2.947703	chr6	6734518	6734983	LINE|L2|L2	+	chr6	6704670	6739030	AL031123.1|ENST00000648205.1	-	6704670,6710871,6711696,6738908	6705078,6711059,6711858,6739030	0.555556
heart_male_adult_34_years	chr12	69624333	69624377	69624376	+	RAMPAGE_only	10	10	26	0.958912	3.979098	chr12	69624339	69624616	SINE|Alu|AluSc5	-	chr12	69738680	69817377	RAB3IP|ENST00000247833.11	+	69738680,69755383,69756404,69784719,69794436,69795140,69800208,69801608,69812777,69812963,69815363	69739031,69755659,69756663,69784815,69794514,69795344,69800337,69801721,69812877,69813033,69817377	0.653846
heart_male_adult_34_years	chr22	24011756	24011757	24011756	+	High_confidence	12	12	12	0.442575	3.251629	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.833333
heart_male_adult_34_years	chr8	17895504	17895521	17895504	-	High_confidence	94	95	242	8.925259	6.176324	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.938017
heart_male_adult_34_years	chr3	188153185	188153210	188153185	+	High_confidence	2	2	9	0.331931	2.750000	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.666667
heart_male_adult_34_years	chr4	63529675	63529737	63529736	-	High_confidence	58	59	248	9.146546	6.255058	chr4	63529519	63529848	LTR|ERVL-MaLR|THE1D	-	chr4	63458680	63529760	STRG.29784.3	-	63458680,63473993,63529656	63468945,63474138,63529760	0.512097
heart_male_adult_34_years	chr6	2949583	2949584	2949583	-	RAMPAGE_only	14	14	14	0.516337	3.521641	chr6	2949217	2950248	LINE|L2|L2a	+	chr6	2948169	2955882	SERPINB6|ENST00000644697.1	-	2948169,2948913,2953043,2954591	2948699,2949069,2953186,2955882	1.000000
heart_male_adult_34_years	chr16	84139251	84139301	84139300	-	RAMPAGE_only	7	7	41	1.512131	5.046457	chr16	84139153	84139637	LTR|ERVL-MaLR|MLT1D	+	chr16	84130318	84144438	HSDL1|ENST00000568857.5	-	84130318,84131101,84135543,84144290	84130431,84131327,84135605,84144438	0.536585
heart_male_adult_34_years	chr1	214312633	214312655	214312654	+	RAMPAGE_only	108	108	190	7.007435	6.057990	chr1	214312302	214313119	LINE|L2|L2a	-	chr1	214281232	214337131	SMYD2|ENST00000366957.9	+	214281232,214305186,214314761,214318078,214318858,214324640,214327621,214330167,214330949,214332017,214334199,214336703	214281427,214305250,214314872,214318139,214318983,214324708,214327724,214330278,214331070,214332192,214334308,214337131	0.947368
heart_male_adult_34_years	chr12	110921452	110921463	110921452	-	High_confidence	4	4	12	0.442575	3.251629	chr12	110921375	110921609	LINE|L2|L2a	+	chr12	110910818	110920600	MYL2|NM_000432.3	-	110910818,110913095,110913245,110914185,110915714,110919103,110920526	110911175,110913144,110913324,110914290,110915790,110919193,110920600	1.000000
heart_male_adult_34_years	chr12	27579351	27579369	27579351	+	RAMPAGE_only	3	3	7	0.258169	2.807355	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.857143
heart_male_adult_34_years	chr3	119666330	119666331	119666330	+	High_confidence	20	21	22	0.811387	3.880180	chr3	119666336	119666498	LTR|ERVL-MaLR|MLT1L	+	chr3	119666246	119674027	STRG.24134.2	+	119666246	119674027	0.954545
heart_male_adult_34_years	chr6	56839178	56839181	56839178	-	RAMPAGE_only	88	90	163	6.011641	5.303685	chr6	56839131	56839380	LTR|ERVL-MaLR|MLT1J	+	chr6	56670738	56843146	STRG.43810.24	-	56670738,56699652,56701887,56703647,56704279,56735227,56843054	56670807,56699745,56701965,56703746,56704369,56735289,56843146	0.840491
heart_male_adult_34_years	chr3	75502388	75502413	75502388	+	High_confidence	15	17	55	2.028468	4.894907	chr3	75502089	75503728	LTR|ERV1|HERVS71-int	-	chr3	75501542	75504914	STRG.22948.1	+	75501542	75504914	0.909091
heart_male_adult_34_years	chr13	48492655	48492663	48492655	-	High_confidence	2	2	8	0.295050	2.750000	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.750000
heart_male_adult_34_years	chr5	16137368	16137370	16137369	+	RAMPAGE_only	6	8	10	0.368812	2.947703	chr5	16137174	16137534	LTR|ERVL-MaLR|THE1B	+	chr5	16129177	16150722	STRG.34868.2	+	16129177	16150722	0.900000
heart_male_adult_34_years	chr2	113625640	113625664	113625640	-	RAMPAGE_only	3	3	14	0.516337	3.324863	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	1.000000
heart_male_adult_34_years	chr6	130978873	130978881	130978873	-	High_confidence	3	4	11	0.405694	3.459432	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	1.000000
heart_male_adult_34_years	chr11	18706991	18707033	18707032	-	High_confidence	10	15	37	1.364606	4.073885	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18705417	18706129	IGSF22|ENST00000510673.1	-	18705417,18705816	18705617,18706129	0.756757
heart_male_adult_34_years	chr9	20658597	20658608	20658607	+	High_confidence	6	8	15	0.553219	2.950212	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.733333
heart_male_adult_34_years	chr19	3062922	3062983	3062922	-	High_confidence	432	491	2070	76.344158	6.217852	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.991304
heart_male_adult_34_years	chr18	46087042	46087065	46087042	-	High_confidence	5	5	19	0.700743	3.471354	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	1.000000
heart_male_adult_34_years	chr11	77672454	77672460	77672454	-	RAMPAGE_only	4	4	8	0.295050	2.521641	chr11	77672368	77672530	SINE|Alu|AluJb	-	chr11	77659995	77700998	STRG.70534.3	-	77659995,77672041,77675035,77676791,77678085,77683709,77685104,77691158,77693506,77698486,77700729	77667491,77672230,77675256,77676999,77678153,77683819,77685159,77691238,77693611,77698693,77700998	0.750000
heart_male_adult_34_years	chr6	6738944	6739096	6738963	-	High_confidence	28	30	174	6.417335	6.388941	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6696493	6739330	STRG.41467.4	-	6696493,6710871,6711696,6734870	6705078,6710981,6711858,6739330	0.885057
heart_male_adult_34_years	chr12	109053951	109053955	109053954	-	High_confidence	4	4	9	0.331931	2.750000	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.777778
heart_male_adult_34_years	chr4	79258869	79258870	79258869	+	High_confidence	40	45	56	2.065349	4.529362	chr4	79257987	79259677	LTR|ERV1|MER52A	+	chr4	79258780	79308654	LINC01088|ENST00000511241.5	+	79258780,79306690,79308272	79259039,79306728,79308654	1.000000
heart_male_adult_34_years	chr17	43389201	43389228	43389201	-	High_confidence	2	2	8	0.295050	2.750000	chr17	43388856	43389213	LINE|L2|L2c	+	chr17	43385862	43389199	LINC00910|ENST00000586231.1	-	43385862,43388504	43388057,43389199	1.000000
heart_male_adult_34_years	chr3	180870518	180870521	180870518	-	High_confidence	8	9	13	0.479456	3.418296	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180780635	180870509	STRG.26774.5	-	180780635,180847506,180870046	180782124,180847624,180870509	0.846154
heart_male_adult_34_years	chr2	200888587	200888598	200888597	-	High_confidence	5	5	12	0.442575	3.084963	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	1.000000
heart_male_adult_34_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	6	6	8	0.295050	3.000000	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.500000
heart_male_adult_34_years	chr13	37934973	37934988	37934979	+	High_confidence	6	6	16	0.590100	3.375000	chr13	37934381	37935273	LTR|ERV1|LTR1D	-	chr13	37934564	38048169	LINC02334|ENST00000617568.1	+	37934564,37997811,38013403,38029648,38043950	37935037,37997937,38013501,38029691,38048169	0.875000
heart_male_adult_34_years	chr10	89516196	89516233	89516214	-	High_confidence	6	8	33	1.217081	4.597276	chr10	89516159	89516235	LINE|L2|L2a	+	chr10	89395244	89516678	STRG.66064.7	-	89395244,89414406,89441107,89443755,89462378,89516093	89412922,89439183,89441251,89443859,89462624,89516678	0.818182
heart_male_adult_34_years	chr18	58551411	58551417	58551413	-	RAMPAGE_only	5	7	12	0.442575	3.095795	chr18	58551169	58551516	LTR|ERVL-MaLR|MLT1C	-	chr18	58470740	58579212	STRG.97638.2	-	58470740,58479403,58481332,58498048,58503930,58514992,58516907,58523805,58523934,58529090,58534833,58578813	58470892,58479937,58482039,58498097,58504148,58515081,58517182,58523841,58524062,58529238,58538224,58579212	0.583333
heart_male_adult_34_years	chr8	129753031	129753120	129753067	-	High_confidence	8	8	42	1.549012	4.689704	chr8	129752564	129757710	LINE|L1|L1MA2	+	chr8	129748195	129752886	GSDMC|ENST00000522273.5	-	129748195,129749451,129749989,129750430,129751541,129751861,129752105,129752697	129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752886	0.928571
heart_male_adult_34_years	chr18	24326594	24326619	24326594	+	High_confidence	9	10	24	0.885150	3.653107	chr18	24326304	24326623	LTR|ERVL-MaLR|MLT1O	+	chr18	24326537	24360919	STRG.96792.1	+	24326537,24335925,24359991,24360848	24326735,24336110,24360111,24360919	0.666667
heart_male_adult_34_years	chr7	140260523	140260546	140260535	-	RAMPAGE_only	8	8	18	0.663862	3.734522	chr7	140260344	140260594	LINE|CR1|CR1_Mam	-	chr7	140084745	140177035	KDM7A|ENST00000397560.6	-	140084745,140091803,140094055,140096554,140096898,140097544,140098878,140099898,140101950,140111094,140113490,140119112,140120441,140124620,140126636,140127441,140129492,140133538,140139104,140176743	140091188,140092077,140094138,140096763,140097047,140097642,140099033,140100023,140102160,140111184,140113582,140119219,140120529,140124783,140126823,140127583,140129653,140133656,140139190,140177035	0.555556
heart_male_adult_34_years	chrX	5726228	5726256	5726255	-	High_confidence	5	5	10	0.368812	3.321928	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.700000
heart_male_adult_34_years	chr1	16020468	16020479	16020472	-	High_confidence	8	9	25	0.922031	4.053509	chr1	16020340	16020460	SINE|MIR|MIR3	-	chr1	16015498	16020585	STRG.716.2	-	16015498,16017073,16017764,16020341	16015759,16017207,16017852,16020585	0.760000
heart_male_adult_34_years	chr8	123413095	123413107	123413101	-	RAMPAGE_only	4	7	15	0.553219	2.664498	chr8	123412758	123413395	LTR|ERV1|MER67B	+	chr8	123320501	123416350	ATAD2|ENST00000521903.5	-	123320501,123322937,123325892,123328189,123333877,123334199,123336372,123337624,123339310,123344883,123346085,123346617,123347091,123348186,123349284,123356388,123357561,123359220,123359576,123361538,123369057,123369820,123370902,123371235,123371669,123372636,123380528,123400742,123416247	123321175,123323066,123326026,123328579,123334021,123334322,123336532,123337821,123339446,123345069,123346272,123346750,123347406,123348273,123349421,123356477,123357736,123359336,123359685,123361646,123369175,123370024,123370990,123371338,123371835,123372686,123380677,123401175,123416350	0.600000
heart_male_adult_34_years	chr15	87495994	87496018	87495994	-	High_confidence	3	3	13	0.479456	3.084963	chr15	87495534	87496275	LINE|L2|L2	+	chr15	87488924	87496209	STRG.88539.2	-	87488924	87496209	0.769231
heart_male_adult_34_years	chr18	50659218	50659335	50659295	+	High_confidence	10	10	77	2.839855	5.696990	chr18	50659243	50659313	DNA|hAT-Tip100|MER91B	-	chr18	50658846	50731824	STRG.97469.2	+	50658846,50663088,50715078,50721937,50725961,50729157	50659460,50664504,50715223,50722099,50726175,50731824	0.844156
heart_male_adult_34_years	chr15	41946976	41947030	41947007	-	RAMPAGE_only	11	11	44	1.622774	4.945772	chr15	41946924	41947161	SINE|MIR|MIR	-	chr15	41895938	41966102	STRG.86497.4	-	41895938,41909698,41919209,41943066,41953763,41965987	41901181,41909863,41919622,41943164,41953940,41966102	0.818182
heart_male_adult_34_years	chrY	20565470	20565485	20565478	-	RAMPAGE_only	5	5	13	0.479456	2.565448	chrY	20563504	20565766	LINE|L1|L1PA10	+	chrY	20414776	20570519	STRG.111907.1	-	20414776,20466427,20468188,20469871,20507351,20518270,20524267	20465822,20466667,20468248,20469981,20507456,20521300,20570519	0.923077
heart_male_adult_34_years	chrY	19076219	19076224	19076219	+	High_confidence	7	7	12	0.442575	2.845351	chrY	19076206	19076517	SINE|Alu|AluY	+	chrY	19076180	19076568	STRG.111823.1	+	19076180	19076568	0.500000
heart_male_adult_34_years	chr22	38606556	38606571	38606570	-	RAMPAGE_only	12	12	24	0.885150	3.845351	chr22	38606445	38606602	LTR|ERVL|MER74A	+	chr22	38591377	38599910	STRG.106430.1	-	38591377,38597203,38599763	38591540,38597356,38599910	0.750000
heart_male_adult_34_years	chr8	93698580	93698581	93698580	+	High_confidence	68	69	75	2.766093	5.589724	chr8	93698481	93698872	LTR|ERVL-MaLR|MLT1H2	+	chr8	93698560	93709779	FAM92A|ENST00000523475.5	+	93698560,93701223,93703619,93704908,93708010,93709770	93698747,93701458,93703688,93705010,93708016,93709779	0.586667
heart_male_adult_34_years	chr2	37020016	37020048	37020017	-	RAMPAGE_only	62	71	111	4.093817	5.996267	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	37008167	37013995	HEATR5B|ENST00000471051.1	-	37008167,37013840	37008848,37013995	0.729730
heart_male_adult_34_years	chr6	170126689	170126690	170126689	-	High_confidence	5	5	8	0.295050	2.521641	chr6	170126572	170126709	LTR|ERVL-MaLR|MLT1F	+	chr6	170122582	170126652	STRG.48039.1	-	170122582	170126652	0.750000
heart_male_adult_34_years	chr20	45407861	45407894	45407861	-	High_confidence	13	13	26	0.958912	4.392747	chr20	45407777	45407881	SINE|MIR|MIRb	-	chr20	45401840	45407967	STRG.103177.1	-	45401840,45405716	45404307,45407967	0.807692
heart_male_adult_34_years	chr20	50267467	50267502	50267475	+	High_confidence	4	5	24	0.885150	3.697846	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.875000
heart_male_adult_34_years	chr6	109250805	109250830	109250805	+	RAMPAGE_only	4	4	9	0.331931	2.503258	chr6	109245218	109251251	LINE|L1|L1PA2	-	chr6	109236613	109270514	LOC100996634|NM_001277339.1	+	109236613,109239327,109242178,109254447,109255370,109257545,109261888,109264800,109267807,109270038	109236780,109239520,109242306,109254648,109255492,109257774,109262091,109264956,109267901,109270514	0.777778
heart_male_adult_34_years	chr2	221501623	221501646	221501623	-	High_confidence	3	3	10	0.368812	2.846439	chr2	221501442	221501654	SINE|MIR|MIRb	-	chr2	221482439	221501344	EPHA4|ENST00000463446.1	-	221482439,221501016	221482690,221501344	0.600000
heart_male_adult_34_years	chr12	121950261	121950292	121950291	+	RAMPAGE_only	7	7	15	0.553219	3.323231	chr12	121949929	121950482	LINE|L1|L1MB5	+	chr12	121952694	121959739	WDR66|ENST00000535257.1	+	121952694,121957073,121958271,121958942	121954334,121957268,121958522,121959739	0.933333
heart_male_adult_34_years	chr16	63617832	63617852	63617832	-	High_confidence	17	22	92	3.393074	5.747191	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63403737	63618046	STRG.91443.7	-	63403737,63407602,63408849,63496729,63617692	63407582,63408519,63496701,63531304,63618046	0.532609
heart_male_adult_34_years	chr1	147172973	147172997	147172973	+	High_confidence	2	2	11	0.405694	3.321928	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.909091
heart_male_adult_34_years	chr15	77894385	77894402	77894401	+	High_confidence	5	5	10	0.368812	2.947703	chr15	77894200	77894526	LTR|ERV1|LTR12C	-	chr15	77894302	77906145	STRG.88031.1	+	77894302,77894684,77896102,77901334,77902112,77903925,77904225	77894576,77894838,77899611,77901804,77902290,77904124,77906145	0.700000
heart_male_adult_34_years	chr10	70324458	70324480	70324458	-	RAMPAGE_only	16	16	28	1.032675	4.161978	chr10	70324412	70324716	LTR|ERVL-MaLR|MLT1M	+	chr10	70298969	70376779	LRRC20|NM_001278213.1	-	70298969,70323862,70376451,70376728	70301508,70324030,70376596,70376779	0.750000
heart_male_adult_34_years	chr8	65790138	65790150	65790138	-	RAMPAGE_only	9	9	29	1.069556	4.208410	chr8	65789775	65790249	LINE|L2|L2a	-	chr8	65714333	65789094	PDE7A|NM_002603.3	-	65714333,65723540,65724254,65724776,65726874,65727169,65734793,65739501,65745406,65747651,65779719,65782782,65788881	65719495,65723621,65724351,65724921,65726966,65727301,65734894,65739597,65745470,65747803,65779803,65782843,65789094	0.551724
heart_male_adult_34_years	chr9	67414206	67414207	67414206	-	High_confidence	4	4	7	0.258169	2.584963	chr9	67413971	67414336	LTR|ERV1|LTR38B	-	chr9	67398249	67414201	STRG.60270.1	-	67398249,67413425,67414091	67399003,67413609,67414201	0.714286
heart_male_adult_34_years	chr3	184816846	184816849	184816848	+	High_confidence	4	6	8	0.295050	2.750000	chr3	184816627	184817008	DNA|TcMar?|MamRep137	-	chr3	184817205	184834717	VPS8|ENST00000441141.5	+	184817205,184824544,184826162,184832688,184834648	184817244,184824785,184826231,184832819,184834717	0.875000
heart_male_adult_34_years	chr16	84185189	84185266	84185265	+	High_confidence	29	29	65	2.397280	4.873652	chr16	84185085	84185443	LINE|L2|L2a	-	chr16	84185199	84188083	STRG.92200.1	+	84185199	84188083	0.953846
heart_male_adult_34_years	chr7	29122314	29122375	29122314	+	High_confidence	55	58	131	4.831442	5.852144	chr7	29122133	29122608	LTR|ERV1|MER31A	-	chr7	29122339	29514667	AC004593.3|ENST00000644824.1	+	29122339,29126328,29128013,29145853,29146848,29354624,29367931,29393678,29398372,29400542,29480278,29495951,29499866,29504743,29507227,29509300,29512563	29122642,29126626,29128167,29146745,29146960,29354663,29367987,29393710,29398486,29400828,29480356,29496036,29500040,29504821,29507365,29509406,29514667	0.908397
heart_male_adult_34_years	chr3	46518423	46518449	46518448	-	RAMPAGE_only	3	3	9	0.331931	2.500000	chr3	46518353	46518661	SINE|Alu|AluSx1	-	chr3	46515385	46566550	LRRC2|NM_024512.4	-	46515385,46521521,46527425,46529904,46532772,46539044,46545045,46551466,46566176	46519063,46521658,46527581,46530050,46532909,46539201,46545253,46551610,46566550	0.888889
heart_male_adult_34_years	chr10	72220310	72220311	72220310	+	RAMPAGE_only	32	32	34	1.253962	3.875000	chr10	72220047	72220353	SINE|Alu|AluSp	+	chr10	72223132	72233829	ANAPC16|ENST00000470481.2	+	72223132,72230365,72233000	72224056,72230440,72233829	0.911765
heart_male_adult_34_years	chr7	51289905	51289927	51289926	-	RAMPAGE_only	6	6	10	0.368812	2.921928	chr7	51289744	51289958	LINE|RTE-X|L4_C_Mam	+	chr7	51190997	51316471	COBL|ENST00000449281.1	-	51190997,51193378,51219740,51316378	51191078,51193589,51219944,51316471	0.600000
heart_male_adult_34_years	chr12	47753931	47753962	47753961	+	High_confidence	5	5	34	1.253962	4.594672	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47753929	47756485	SLC48A1|ENST00000552003.1	+	47753929,47755701	47754027,47756485	0.529412
heart_male_adult_34_years	chr8	122736182	122736196	122736195	-	RAMPAGE_only	7	7	18	0.663862	3.499228	chr8	122735962	122736195	SINE|MIR|MIRc	-	chr8	122700268	122703423	AC100872.1|ENST00000577765.1	-	122700268,122703066	122700412,122703423	0.777778
heart_male_adult_34_years	chr20	38985938	38985986	38985964	+	RAMPAGE_only	11	12	46	1.696537	4.925523	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.934783
heart_male_adult_34_years	chr6	34757079	34757101	34757100	+	High_confidence	7	7	20	0.737625	2.939354	chr6	34757127	34757285	LINE|L2|L2a	+	chr6	34757093	34773857	SNRPC|NR_029472.1	+	34757093,34762594,34767907,34770290,34773445	34757551,34762703,34767997,34770395,34773857	1.000000
heart_male_adult_34_years	chr7	33554843	33554883	33554875	+	High_confidence	139	143	843	31.090882	6.709995	chr7	33553757	33554962	LINE|L2|L2a	-	chr7	33554859	33605626	STRG.49428.14	+	33554859,33604864,33605194	33554984,33604975,33605626	0.963227
heart_male_adult_34_years	chr19	12773369	12773403	12773402	-	High_confidence	3	3	12	0.442575	2.855389	chr19	12773232	12773546	SINE|Alu|AluJo	-	chr19	12771394	12773253	HOOK2|ENST00000588052.5	-	12771394,12772189,12772612,12772779,12772993	12771477,12772252,12772680,12772912,12773253	1.000000
heart_male_adult_34_years	chr16	72014393	72014394	72014393	+	High_confidence	5	5	8	0.295050	2.521641	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.750000
heart_male_adult_34_years	chr19	3062734	3062735	3062734	-	High_confidence	14	14	21	0.774506	4.121928	chr19	3062710	3062746	SINE|MIR|MIR3	+	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.952381
heart_male_adult_34_years	chr10	122127024	122127025	122127024	+	High_confidence	11	11	12	0.442575	3.459432	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.666667
heart_male_adult_34_years	chr1	201373814	201373846	201373843	-	High_confidence	3	3	12	0.442575	3.459432	chr1	201373644	201373868	SINE|Alu|AluJb	-	chr1	201363328	201373315	TNNT2|ENST00000466570.5	-	201363328,201364297,201365190,201365609,201366837,201367770,201368161,201372026,201373118	201363406,201364375,201365307,201365670,201366871,201367803,201368227,201372155,201373315	0.500000
heart_male_adult_34_years	chr1	107836974	107836992	107836974	-	RAMPAGE_only	3	3	7	0.258169	2.521641	chr1	107835990	107837417	LINE|L1|L1PA16	+	chr1	107766514	107820896	VAV3|ENST00000524574.5	-	107766514,107768440,107770635,107772734,107777230,107779433,107820785	107766550,107768509,107770728,107772843,107777296,107779492,107820896	0.571429
heart_male_adult_34_years	chr3	123335232	123335233	123335232	-	RAMPAGE_only	17	17	23	0.848268	4.175736	chr3	123334942	123335392	LTR|ERVL|MER74A	+	chr3	123300219	123404561	ADCY5|ENST00000466617.5	-	123300219,123303054,123304066,123314234,123318019,123319673,123320748,123325321,123327617,123328643,123330888,123332563,123347781,123352431,123404438	123300295,123303219,123304183,123314322,123318117,123319818,123320771,123325462,123327759,123328802,123331016,123332675,123347903,123352581,123404561	0.782609
heart_male_adult_34_years	chr10	106648898	106648902	106648901	+	High_confidence	133	135	280	10.326746	6.948556	chr10	106648676	106649439	LTR|ERV1|LTR1	+	chr10	106648732	106677579	STRG.66974.2	+	106648732,106676144	106649145,106677579	0.617857
heart_male_adult_34_years	chr21	17901276	17901312	17901311	+	High_confidence	3	3	7	0.258169	2.521641	chr21	17900086	17901723	LINE|L1|L1PB1	-	chr21	17901262	18267373	CHODL|ENST00000400128.5	+	17901262,17917219,18256508,18256969,18260199,18262790,18265953	17901424,17917400,18256818,18257127,18260286,18262893,18267373	0.571429
heart_male_adult_34_years	chr2	219419828	219419849	219419848	+	High_confidence	7	7	17	0.626981	3.625000	chr2	219419757	219419880	LINE|L2|L2b	-	chr2	219420044	219423820	DES|ENST00000477226.5	+	219420044,219420250,219420494,219420827,219421339,219423776	219420155,219420346,219420656,219420953,219421560,219423820	0.941176
heart_male_adult_34_years	chr2	219631638	219631711	219631658	+	High_confidence	24	24	141	5.200254	5.513480	chr2	219631665	219631820	SINE|MIR|MIRc	+	chr2	219632058	219637795	SLC4A3|ENST00000416910.1	+	219632058,219632261,219632873,219633273,219633865,219634419,219635270,219635672,219636301,219636679,219637580	219632116,219632442,219633009,219633457,219633979,219634604,219635496,219635891,219636450,219636874,219637795	0.836879
heart_male_adult_34_years	chr5	32403145	32403149	32403148	-	RAMPAGE_only	4	4	8	0.295050	2.500000	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
heart_male_adult_34_years	chr4	128427978	128428006	128428005	+	High_confidence	28	28	62	2.286637	4.722217	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.822581
heart_male_adult_34_years	chr11	72111466	72111497	72111466	-	High_confidence	3	4	11	0.405694	2.845351	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72107158	72111443	ANAPC15|ENST00000543050.5	-	72107158,72110087,72110543,72111156,72111411	72107605,72110225,72110603,72111286,72111443	0.909091
heart_male_adult_34_years	chr19	46350849	46350867	46350849	+	RAMPAGE_only	9	11	22	0.811387	3.499228	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.954545
heart_male_adult_34_years	chr17	49646471	49646480	49646471	-	High_confidence	6	6	13	0.479456	3.022055	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.846154
heart_male_adult_34_years	chr4	55948010	55948012	55948010	-	High_confidence	11	15	22	0.811387	4.095795	chr4	55947862	55947994	LTR|ERV1|MER51D	-	chr4	55934461	55948004	STRG.29512.4	-	55934461,55947839	55940632,55948004	0.681818
heart_male_adult_34_years	chr1	155637702	155637729	155637728	-	High_confidence	3	3	7	0.258169	2.521641	chr1	155637667	155637959	SINE|Alu|AluY	-	chr1	155626693	155637710	STRG.6152.12	-	155626693,155637393	155634846,155637710	1.000000
heart_male_adult_34_years	chr12	83472512	83472541	83472518	-	High_confidence	4	4	13	0.479456	3.026987	chr12	83472101	83472741	LTR|ERVL-MaLR|MLT1E2	+	chr12	83457678	83472510	STRG.76803.1	-	83457678,83472259	83458952,83472510	1.000000
heart_male_adult_34_years	chr22	50757129	50757147	50757129	+	High_confidence	4	4	12	0.442575	3.418296	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.750000
heart_male_adult_34_years	chr6	89638823	89638824	89638823	+	High_confidence	8	8	12	0.442575	2.845351	chr6	89638870	89638965	SINE|MIR|MIRb	+	chr6	89638807	89640330	STRG.44715.1	+	89638807	89640330	0.833333
heart_male_adult_34_years	chr1	78620056	78620058	78620056	+	High_confidence	26	40	40	1.475249	5.021928	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.725000
heart_male_adult_34_years	chr1	223027908	223027937	223027918	+	RAMPAGE_only	68	72	146	5.384660	6.397118	chr1	223026735	223029699	LTR|ERV1|HERVH-int	-	chr1	223026614	223115205	STRG.8972.1	+	223026614,223049314,223056551,223060304,223063112,223110523	223028018,223056417,223059565,223060508,223063505,223115205	0.835616
heart_male_adult_34_years	chr20	25191851	25191868	25191851	-	High_confidence	5	5	12	0.442575	3.418296	chr20	25191623	25192078	LTR|ERVL|MER70A	-	chr20	25180483	25192004	STRG.102475.1	-	25180483,25186896,25187852,25191726	25186160,25186979,25190302,25192004	0.750000
heart_male_adult_34_years	chr7	95005061	95005097	95005061	+	RAMPAGE_only	3	3	9	0.331931	2.641604	chr7	95005086	95005142	LINE|L2|L2a	+	chr7	94910082	95290364	PPP1R9A|ENST00000289495.7	+	94910082,95111258,95120711,95161866,95198348,95225960,95247472,95250025,95251761,95251958,95268549,95269260,95273898,95274084,95284017,95286205,95288535,95290090	94911508,95111391,95120832,95161971,95198484,95226116,95247526,95250255,95251858,95252130,95268707,95269507,95273986,95274168,95284216,95286325,95288718,95290364	0.555556
heart_male_adult_34_years	chr4	158172987	158173025	158173024	-	High_confidence	274	302	433	15.969575	6.523837	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158127544	158173023	STRG.33382.7	-	158127544,158155610,158170465,158172867	158131012,158155825,158171599,158173023	0.893764
heart_male_adult_34_years	chr7	33554666	33554781	33554780	+	High_confidence	9	9	44	1.622774	4.680689	chr7	33553757	33554962	LINE|L2|L2a	-	chr7	33554859	33605626	STRG.49428.14	+	33554859,33604864,33605194	33554984,33604975,33605626	1.000000
heart_male_adult_34_years	chr18	66670192	66670193	66670192	-	RAMPAGE_only	16	16	22	0.811387	3.684184	chr18	66669951	66670217	LINE|L2|L2	+	chr18	66501186	66604138	CDH19|NR_073130.1	-	66501186,66508994,66511567,66529844,66534985,66543970,66544718,66551093,66554404,66568415,66572009,66603953	66505302,66509218,66511685,66529966,66535107,66544224,66544903,66551258,66554524,66568710,66572316,66604138	0.500000
heart_male_adult_34_years	chr7	113918596	113918696	113918672	-	High_confidence	66	71	235	8.667090	5.978247	chr7	113918643	113918708	DNA|hAT-Ac|OldhAT1	-	chr7	113879770	113918996	PPP1R3A|ENST00000284602.1	-	113879770,113882038,113882261,113918214,113918818	113880125,113882163,113882320,113918297,113918996	0.851064
heart_male_adult_34_years	chr21	44962745	44962759	44962753	+	RAMPAGE_only	2	3	12	0.442575	2.845351	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44958245	44976973	FAM207A|ENST00000479127.5	+	44958245,44960099,44967033,44973196,44976679	44958424,44960168,44967181,44973265,44976973	0.916667
heart_male_adult_34_years	chrX	155719045	155719097	155719045	-	RAMPAGE_only	83	96	283	10.437390	6.475845	chrX	155718901	155722240	LINE|L1|L1M1	+	chrX	155489010	155612961	TMLHE|NM_018196.3	-	155489010,155492356,155506897,155511672,155513985,155524455,155545095,155612791	155491666,155492495,155507134,155511792,155514265,155524632,155545277,155612961	0.526502
heart_male_adult_34_years	chr5	180830990	180831032	180831031	+	High_confidence	7	7	52	1.917824	5.265467	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831026	180834779	STRG.41105.2	+	180831026,180831758,180834311	180831229,180831806,180834779	0.615385
heart_male_adult_34_years	chr3	164451244	164451246	164451244	+	High_confidence	5	10	11	0.405694	2.845351	chr3	164449656	164452200	LINE|L1|L1PA15	-	chr3	164451257	164532563	STRG.26164.1	+	164451257,164532285	164451535,164532563	1.000000
heart_male_adult_34_years	chr10	102449836	102449837	102449836	+	High_confidence	10	10	12	0.442575	3.022055	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.833333
heart_male_adult_34_years	chr9	111284874	111284875	111284874	-	High_confidence	42	45	56	2.065349	4.377767	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.803571
heart_male_adult_34_years	chr15	43133126	43133146	43133134	+	High_confidence	19	19	52	1.917824	4.908758	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133143	43148788	TMEM62|ENST00000569535.5	+	43133143,43135511,43146492,43148754	43133402,43135649,43146634,43148788	0.557692
heart_male_adult_34_years	chr3	135965673	135965764	135965748	+	High_confidence	78	79	456	16.817843	6.284747	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.991228
heart_male_adult_34_years	chr9	121281815	121281851	121281850	+	RAMPAGE_only	18	19	34	1.253962	4.184863	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.676471
heart_male_adult_34_years	chr3	126748971	126748998	126748997	+	RAMPAGE_only	16	16	39	1.438368	4.650662	chr3	126748776	126749205	LINE|L2|L2b	-	chr3	126730563	126960391	CHCHD6|ENST00000513253.1	+	126730563,126733077,126852646,126914679,126957424,126960195	126730630,126733222,126852730,126914750,126957551,126960391	0.564103
heart_male_adult_34_years	chr4	90235237	90235248	90235237	+	High_confidence	5	5	16	0.590100	3.323231	chr4	90235152	90235531	LTR|Gypsy?|LTR88c	-	chr4	90235030	90782004	CCSER1|NM_207491.2	+	90235030,90308243,90312862,90400035,90468233,90628024,90723913,90780441	90235343,90309608,90313047,90400129,90468354,90628232,90723991,90782004	0.750000
heart_male_adult_34_years	chr1	35538533	35538553	35538533	-	RAMPAGE_only	10	10	43	1.585893	4.862815	chr1	35538308	35538616	SINE|Alu|AluSx	+	chr1	35451634	35554987	KIAA0319L|ENST00000440579.5	-	35451634,35453556,35454361,35456012,35460304,35462620,35466607,35470862,35474804,35478965,35506611,35554349,35554899	35451776,35453689,35454485,35456241,35460437,35462713,35466695,35470960,35474906,35479212,35507135,35554519,35554987	0.627907
heart_male_adult_34_years	chr6	155282798	155282820	155282800	-	RAMPAGE_only	4	6	15	0.553219	3.773557	chr6	155282731	155283026	SINE|Alu|AluY	-	chr6	155257976	155297069	STRG.47473.7	-	155257976,155260272,155296952	155258082,155285277,155297069	0.600000
heart_male_adult_34_years	chr3	14047155	14047156	14047155	-	High_confidence	28	28	33	1.217081	4.413910	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14040744	14047251	STRG.20296.1	-	14040744,14046812	14041628,14047251	0.606061
heart_male_adult_34_years	chr5	78387800	78387811	78387800	+	RAMPAGE_only	2	3	6	0.221287	2.584963	chr5	78382819	78388024	LINE|L1|L1PB1	-	chr5	78360804	78416588	SCAMP1|ENST00000510030.2	+	78360804,78388836,78415519,78416540	78361056,78388914,78415618,78416588	1.000000
heart_male_adult_34_years	chr4	44025504	44025522	44025521	-	High_confidence	3	3	12	0.442575	3.277613	chr4	44025276	44025608	LTR|ERVL|LTR16A	+	chr4	44024562	44025579	STRG.29226.1	-	44024562	44025579	0.666667
heart_male_adult_34_years	chr10	30974856	30974939	30974862	-	RAMPAGE_only	20	20	125	4.610154	6.055600	chr10	30974767	30974948	SINE|MIR|MIR3	-	chr10	30844780	30984426	STRG.64187.9	-	30844780,30848530,30875330,30876997,30908932,30941574,30974593	30845573,30850367,30875509,30877065,30909015,30941651,30984426	0.640000
heart_male_adult_34_years	chr6	76774932	76775046	76774952	+	High_confidence	4	5	28	1.032675	4.137538	chr6	76774716	76775166	LTR|ERVL|MER70A	+	chr6	76774982	76775860	AL590426.2|ENST00000607287.1	+	76774982,76775167	76775075,76775860	0.857143
heart_male_adult_34_years	chr4	119127416	119127417	119127416	-	High_confidence	4	4	7	0.258169	2.584963	chr4	119127197	119127483	SINE|Alu|AluSp	-	chr4	119106425	119128339	STRG.31915.3	-	119106425,119122206	119120101,119128339	0.571429
heart_male_adult_34_years	chr22	32059151	32059191	32059169	+	High_confidence	2675	2733	5988	220.844839	6.272483	chr22	32059153	32059234	SINE|Alu|AluSz6	+	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	0.943721
heart_male_adult_34_years	chr12	27579244	27579303	27579244	+	RAMPAGE_only	8	8	47	1.733418	4.986189	chr12	27579150	27579292	SINE|MIR|MIR3	+	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.702128
heart_male_adult_34_years	chr7	87040212	87040223	87040212	-	High_confidence	12	12	44	1.622774	4.518833	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86880076	87040788	STRG.50834.3	-	86880076,86891723,86892921,86897505,86907669,86908446,86909811,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86880530,86891889,86893100,86897632,86907771,86908543,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040788	0.954545
heart_male_adult_34_years	chr6	34762164	34762177	34762176	+	RAMPAGE_only	22	26	40	1.475249	4.231058	chr6	34762020	34762316	SINE|Alu|AluJb	+	chr6	34757911	34773532	SNRPC|ENST00000474635.1	+	34757911,34762594,34767907,34770290,34772930,34773445	34757954,34762703,34767997,34770395,34773007,34773532	0.850000
heart_male_adult_34_years	chrX	15607235	15607236	15607235	-	High_confidence	11	11	11	0.405694	2.913977	chrX	15606866	15607460	LTR|ERV1|LTR10C	+	chrX	15538846	15607193	STRG.107409.2	-	15538846,15564023,15566252,15567725,15570294,15571623,15572200,15573366,15575665,15578088,15581220,15585474,15587752,15589343,15591712,15592228,15594844,15600725,15607136	15562013,15564218,15566369,15567826,15570353,15571796,15572323,15573465,15575810,15578315,15581390,15585572,15587858,15589456,15591856,15592322,15595003,15600917,15607193	0.545455
heart_male_adult_34_years	chr16	20674404	20674408	20674404	+	High_confidence	6	6	17	0.626981	3.852169	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.823529
heart_male_adult_34_years	chr1	217018684	217018709	217018708	-	RAMPAGE_only	2	2	6	0.221287	2.584963	chr1	217018324	217018786	LINE|L2|L2c	+	chr1	216506787	217076889	ESRRG|ENST00000493748.5	-	216506787,216519151,216564218,216567987,216650972,216677075,216939581,217000252,217076851	216507183,216519421,216564380,216568098,216651089,216677491,216939673,217000724,217076889	0.666667
heart_male_adult_34_years	chr21	25688002	25688013	25688002	+	RAMPAGE_only	1	1	7	0.258169	2.584963	chr21	25687699	25688081	LINE|L2|L2a	+	chr21	25689865	25714731	JAM2|ENST00000460679.5	+	25689865,25693755,25698676,25702169,25705978,25709433,25711366,25712339,25714639	25689973,25693908,25698879,25702269,25706086,25709449,25711568,25712382,25714731	0.857143
heart_male_adult_34_years	chr2	27305800	27305811	27305800	+	RAMPAGE_only	7	9	14	0.516337	3.521641	chr2	27305831	27306026	SINE|MIR|MIRb	+	chr2	27282461	27307439	TRIM54|ENST00000296098.4	+	27282461,27298566,27299244,27299529,27304958,27305583,27306079,27306212,27306455,27306886	27282899,27298739,27299416,27299655,27305054,27305817,27306102,27306337,27306542,27307439	1.000000
heart_male_adult_34_years	chr6	20334469	20334494	20334469	-	High_confidence	13	13	25	0.922031	3.395085	chr6	20334196	20334750	LTR|ERVL-MaLR|MLT1K	-	chr6	20331315	20334500	STRG.41863.1	-	20331315,20334133	20331525,20334500	0.960000
heart_male_adult_34_years	chr1	171251856	171251868	171251856	-	High_confidence	6	6	10	0.368812	3.121928	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171247579	171251794	AL445673.1|ENST00000455124.2	-	171247579,171251522	171247723,171251794	1.000000
heart_male_adult_34_years	chr5	107778849	107778881	107778849	+	High_confidence	5	5	21	0.774506	3.884184	chr5	107778417	107779035	LINE|RTE-BovB|MamRTE1	+	chr5	107778866	107781016	STRG.37892.1	+	107778866,107780781	107779025,107781016	0.904762
heart_male_adult_34_years	chr8	93017658	93017716	93017667	-	High_confidence	154	154	771	28.435433	7.456879	chr8	93017253	93017736	LTR|ERVL|LTR79	-	chr8	92885319	93017673	TRIQK|ENST00000520686.5	-	92885319,92891988,92916928,92954405,93017608	92886735,92892074,92917010,92954564,93017673	0.562905
heart_male_adult_34_years	chr9	98943483	98943578	98943575	+	High_confidence	18	19	88	3.245549	5.626656	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
heart_male_adult_34_years	chr1	231847665	231847707	231847665	-	High_confidence	898	912	1757	64.800331	7.561304	chr1	231847541	231847935	LINE|L2|L2a	+	chr1	231804685	231847693	STRG.9310.3	-	231804685,231817088,231847518	231816911,231822834,231847693	0.815595
heart_male_adult_34_years	chr19	5680240	5680261	5680240	-	High_confidence	62	62	194	7.154960	5.705608	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.948454
heart_male_adult_34_years	chr20	3795750	3795789	3795750	+	High_confidence	12	12	64	2.360399	4.807306	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.953125
heart_male_adult_34_years	chr17	8310227	8310257	8310256	+	High_confidence	7	8	27	0.995793	4.208410	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.555556
heart_male_adult_34_years	chr8	19678562	19678586	19678585	+	High_confidence	7	7	18	0.663862	3.683542	chr8	19678447	19678659	LINE|CR1|L3	+	chr8	19678571	19688934	AC090541.1|ENST00000519803.1	+	19678571,19688723	19678827,19688934	0.888889
heart_male_adult_34_years	chr6	122127086	122127131	122127130	+	High_confidence	46	48	121	4.462630	6.293128	chr6	122126885	122128053	LINE|L2|L2	-	chr6	122127075	122131399	STRG.45743.2	+	122127075	122131399	0.991736
heart_male_adult_34_years	chr11	65382641	65382646	65382645	-	High_confidence	9	10	15	0.553219	3.128085	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.933333
heart_male_adult_34_years	chr18	55119563	55119587	55119563	-	High_confidence	8	8	19	0.700743	3.461320	chr18	55119430	55119710	LINE|L2|L2	+	chr18	55108310	55119598	LINC01929|ENST00000592405.1	-	55108310,55116953,55119495	55108653,55117083,55119598	0.631579
heart_male_adult_34_years	chr12	46266488	46266555	46266488	-	High_confidence	47	51	231	8.519565	5.447860	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.969697
heart_male_adult_34_years	chr1	56645845	56645872	56645845	+	High_confidence	3	4	20	0.737625	3.405822	chr1	56645691	56645853	SINE|MIR|MIR3	+	chr1	56645387	56715334	PRKAA2|ENST00000610361.1	+	56645387,56671440,56674380,56691393,56692357,56693764,56695934,56703970,56706091,56707474	56645474,56671447,56674522,56691487,56692502,56693852,56696159,56704475,56706218,56715334	0.700000
heart_male_adult_34_years	chr11	112776873	112776887	112776886	-	High_confidence	7	7	15	0.553219	3.467720	chr11	112776698	112776850	SINE|MIR|MIRb	-	chr11	112757853	112776885	STRG.72037.1	-	112757853,112776036	112757890,112776885	0.733333
heart_male_adult_34_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	19	19	19	0.700743	3.721612	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
heart_male_adult_34_years	chr1	1655439	1655462	1655448	-	RAMPAGE_only	13	14	33	1.217081	4.392583	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.545455
heart_male_adult_34_years	chr12	6493747	6493748	6493747	-	High_confidence	12	12	16	0.590100	3.640224	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6492151	6493718	MRPL51|ENST00000543959.5	-	6492151,6492861,6493673	6492467,6492972,6493718	0.937500
heart_male_adult_34_years	chr1	147173219	147173261	147173225	+	High_confidence	10	11	53	1.954705	5.000569	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.849057
heart_male_adult_34_years	chr1	226915798	226915835	226915798	-	High_confidence	2	2	11	0.405694	3.321928	chr1	226915520	226915853	LINE|CR1|L3	-	chr1	226912464	226915817	STRG.9181.1	-	226912464,226915732	226912890,226915817	0.636364
heart_male_adult_34_years	chr4	2862639	2862641	2862640	-	High_confidence	28	33	46	1.696537	5.091853	chr4	2862475	2862907	LINE|L2|L2a	+	chr4	2861157	2862664	STRG.27717.1	-	2861157	2862664	0.608696
heart_male_adult_34_years	chr7	2242922	2242923	2242922	+	High_confidence	15	15	15	0.553219	2.999581	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
heart_male_adult_34_years	chr2	10844241	10844421	10844420	+	High_confidence	143	143	710	26.185677	5.979955	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844208	10893549	STRG.10162.4	+	10844208	10893549	0.992958
heart_male_adult_34_years	chr5	151687233	151687245	151687244	-	High_confidence	6	6	18	0.663862	4.058814	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
heart_male_adult_34_years	chr8	80485592	80485593	80485592	+	High_confidence	6	7	8	0.295050	2.807355	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.625000
heart_male_adult_34_years	chr15	87496164	87496244	87496221	-	High_confidence	67	67	253	9.330953	6.717379	chr15	87495534	87496275	LINE|L2|L2	+	chr15	87488924	87496209	STRG.88539.2	-	87488924	87496209	0.924901
heart_male_adult_34_years	chr15	90762307	90762407	90762307	+	High_confidence	31	31	286	10.548033	6.527661	chr15	90762254	90762815	LINE|L2|L2b	-	chr15	90762363	90815361	STRG.88781.2	+	90762363,90762965,90765295,90766909,90769132,90769437,90782821,90784920,90790648,90794166,90798189,90803520,90804166,90809136,90811204,90815101	90762422,90763157,90765414,90767023,90769231,90769586,90782928,90785081,90790844,90794357,90798337,90803720,90804359,90809259,90811406,90815361	0.604895
heart_male_adult_34_years	chr7	107580458	107580507	107580506	+	High_confidence	7	7	23	0.848268	4.106603	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.521739
heart_male_adult_34_years	chr7	15547689	15547690	15547689	-	RAMPAGE_only	11	11	17	0.626981	3.202820	chr7	15547309	15553333	LINE|L1|L1PA2	+	chr7	15200317	15562015	AGMO|NM_001004320.1	-	15200317,15365513,15366139,15385445,15387405,15390670,15390839,15394112,15418557,15431004,15544771,15560140,15561719	15201359,15365619,15366222,15385562,15387540,15390750,15390905,15394179,15418653,15431108,15544923,15560271,15562015	0.882353
heart_male_adult_34_years	chr5	127858364	127858429	127858428	-	High_confidence	36	44	157	5.790354	4.555205	chr5	127858260	127858629	LINE|L2|L2c	+	chr5	127854991	127858747	STRG.38752.1	-	127854991	127858747	0.993631
heart_male_adult_34_years	chr5	150651089	150651463	150651262	+	RAMPAGE_only	99	105	1131	41.712678	6.654161	chr5	150651250	150651383	SINE|MIR|MIR3	+	chr5	150640677	150652337	SYNPO|ENST00000519664.1	+	150640677,150647943	150640854,150652337	0.996463
heart_male_adult_34_years	chr5	41456586	41456628	41456608	-	RAMPAGE_only	11	11	28	1.032675	4.028605	chr5	41456571	41456939	LTR|ERVL-MaLR|MLT1A0	+	chr5	41306956	41510601	STRG.35462.1	-	41306956,41308356,41381825,41454884,41510423	41308267,41313770,41382534,41464417,41510601	0.964286
heart_male_adult_34_years	chrY	20565511	20565512	20565511	-	RAMPAGE_only	10	10	10	0.368812	2.921928	chrY	20563504	20565766	LINE|L1|L1PA10	+	chrY	20414776	20570519	STRG.111907.1	-	20414776,20466427,20468188,20469871,20507351,20518270,20524267	20465822,20466667,20468248,20469981,20507456,20521300,20570519	1.000000
heart_male_adult_34_years	chr19	51688373	51688426	51688373	+	High_confidence	51	52	295	10.879965	6.716314	chr19	51688154	51688544	LINE|L2|L2c	+	chr19	51688598	51688839	STRG.101049.1	+	51688598	51688839	0.935593
heart_male_adult_34_years	chr17	1648197	1648213	1648202	-	High_confidence	4	4	16	0.590100	3.506891	chr17	1648093	1648307	LINE|L2|L2b	+	chr17	1646192	1648846	RILP|ENST00000570858.5	-	1646192,1646905,1647834,1648349	1646619,1646989,1647957,1648846	0.812500
heart_male_adult_34_years	chr15	33194708	33194749	33194708	-	High_confidence	25	26	56	2.065349	4.840006	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.857143
heart_male_adult_34_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	33	33	62	2.286637	5.270661	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.774194
heart_male_adult_34_years	chr10	124678175	124678198	124678197	-	RAMPAGE_only	19	20	42	1.549012	3.930007	chr10	124678125	124678223	LINE|CR1|L3	-	chr10	124621670	124744269	STRG.67493.9	-	124621670,124696157,124706635,124744012	124682379,124696212,124706887,124744269	0.976190
heart_male_adult_34_years	chr20	18794077	18794086	18794077	+	High_confidence	29	29	74	2.729211	5.071582	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.945946
heart_male_adult_34_years	chr1	201373696	201373697	201373696	-	High_confidence	5	5	8	0.295050	2.521641	chr1	201373644	201373868	SINE|Alu|AluJb	-	chr1	201363328	201373315	TNNT2|ENST00000466570.5	-	201363328,201364297,201365190,201365609,201366837,201367770,201368161,201372026,201373118	201363406,201364375,201365307,201365670,201366871,201367803,201368227,201372155,201373315	0.875000
heart_male_adult_34_years	chr15	84836033	84836034	84836033	+	RAMPAGE_only	5	6	7	0.258169	2.584963	chr15	84835841	84837447	LINE|L2|L2a	-	chr15	84817381	84873482	STRG.88690.1	+	84817381,84823329,84827483,84838979,84839701,84856391,84859242,84859775,84860036,84862634,84863551,84864441,84867316,84868110,84870107	84817595,84823368,84827605,84839097,84840932,84858555,84859390,84859903,84860072,84862915,84863640,84864665,84867365,84870037,84873482	0.857143
heart_male_adult_34_years	chr11	3511681	3511721	3511696	+	High_confidence	12	12	32	1.180200	4.351410	chr11	3510213	3513027	LTR|ERV1|HERVS71-int	-	chr11	3511683	3515181	STRG.67939.1	+	3511683	3515181	0.531250
heart_male_adult_34_years	chr3	139344537	139344548	139344547	+	High_confidence	84	84	251	9.257190	5.874979	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.916335
heart_male_adult_34_years	chr5	133089665	133089679	133089676	+	RAMPAGE_only	12	13	24	0.885150	4.334963	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
heart_male_adult_34_years	chr4	86453149	86453203	86453202	-	High_confidence	22	26	128	4.720798	5.300033	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.828125
heart_male_adult_34_years	chr12	15001766	15001811	15001810	+	High_confidence	15	18	38	1.401487	4.491220	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.815789
heart_male_adult_34_years	chr6	118651542	118651602	118651592	-	High_confidence	64	64	356	13.129720	6.659645	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118460771	118651648	STRG.45642.4	-	118460771,118469071,118470536,118479870,118480395,118481778,118483705,118491685,118511297,118523801,118537523,118632452,118651196	118465568,118469303,118470644,118479921,118480513,118481933,118483858,118491865,118511415,118523920,118566316,118632611,118651648	0.949438
heart_male_adult_34_years	chr5	148453106	148453129	148453128	+	High_confidence	10	10	19	0.700743	3.683542	chr5	148452965	148453486	LTR|ERVL|LTR50	+	chr5	148452895	148554949	STRG.39811.1	+	148452895,148468919,148477376,148550084	148453172,148469017,148477538,148554949	0.684211
heart_male_adult_34_years	chr11	113878754	113878755	113878754	-	RAMPAGE_only	48	51	54	1.991587	5.012470	chr11	113878589	113878950	LTR|ERVL-MaLR|THE1A	-	chr11	113797873	113875570	USP28|ENST00000003302.8	-	113797873,113801482,113803157,113803797,113804672,113804867,113806488,113808297,113809062,113812275,113813884,113815173,113817657,113823604,113827232,113829196,113830866,113831919,113833419,113834248,113840597,113841662,113852500,113854257,113875444	113799415,113801678,113803281,113803877,113804751,113805046,113806584,113808437,113809254,113812504,113813955,113815382,113817837,113823700,113827360,113829345,113830943,113831993,113833557,113834335,113840757,113841768,113852633,113854335,113875570	0.870370
heart_male_adult_34_years	chr4	57445348	57445377	57445376	+	RAMPAGE_only	4	4	10	0.368812	2.921928	chr4	57445252	57445423	SINE|MIR|MIR	-	chr4	57425871	57465986	LOC101928851|NR_125907.1	+	57425871,57426978,57427304,57434741,57464224,57465640	57426018,57427109,57427427,57434884,57464372,57465986	0.500000
heart_male_adult_34_years	chr5	83096120	83096153	83096152	+	High_confidence	19	36	74	2.729211	4.626014	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83095828	83261883	STRG.36711.4	+	83095828,83104909,83111027,83195769,83203551,83204814,83258529	83096263,83105058,83111203,83195936,83203707,83204921,83261883	0.972973
heart_male_adult_34_years	chr7	112452365	112452425	112452424	+	High_confidence	5	5	22	0.811387	3.921928	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112458982	IFRD1|ENST00000440625.5	+	112452057,112455762,112456001,112456913,112458860	112452511,112455867,112456086,112457038,112458982	0.909091
heart_male_adult_34_years	chr15	62815309	62815310	62815309	+	RAMPAGE_only	6	6	9	0.331931	2.500000	chr15	62815347	62815498	LINE|CR1|L3	+	chr15	62740444	62841486	TLN2|ENST00000489129.5	+	62740444,62748350,62750401,62752304,62753772,62761680,62762271,62763562,62766320,62770963,62776763,62781139,62783770,62792640,62796126,62797218,62800367,62800652,62805599,62809924,62819515,62820485,62833503,62835736,62835890,62838855,62840481	62740769,62748444,62750491,62752427,62755693,62761821,62762453,62763695,62766422,62771134,62776910,62781241,62783890,62792787,62796293,62797402,62800493,62800769,62805785,62810032,62819621,62820610,62833629,62835799,62836073,62838981,62841486	0.777778
heart_male_adult_34_years	chr3	141429538	141429587	141429538	+	RAMPAGE_only	25	30	60	2.212874	5.314681	chr3	141429492	141430039	LINE|L2|L2a	-	chr3	141426126	141443020	ZBTB38|ENST00000510726.1	+	141426126,141427633,141442388	141426165,141427821,141443020	0.583333
heart_male_adult_34_years	chr19	17075172	17075191	17075172	-	High_confidence	3	3	7	0.258169	2.584963	chr19	17075045	17075226	SINE|MIR|MIRb	-	chr19	17049765	17075200	HAUS8|ENST00000593360.1	-	17049765,17052824,17055860,17058548,17058810,17059556,17059996,17062697,17069030,17073273	17050176,17052966,17056002,17058707,17058876,17059651,17060092,17062779,17069086,17075200	0.857143
heart_male_adult_34_years	chr5	160199150	160199156	160199155	+	High_confidence	66	91	153	5.642829	4.279081	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.934641
heart_male_adult_34_years	chr8	18063185	18063216	18063197	-	High_confidence	5	5	22	0.811387	4.095795	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
heart_male_adult_34_years	chr12	7502508	7502530	7502519	-	High_confidence	3	3	12	0.442575	3.277613	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.916667
heart_male_adult_34_years	chrX	44951147	44951148	44951147	+	RAMPAGE_only	46	50	53	1.954705	5.013661	chrX	44950752	44951268	LTR|ERV1|LTR10D	+	chrX	44873551	45111411	KDM6A|ENST00000621147.4	+	44873551,44873923,44961283,44974665,45010960,45020609,45034930,45037654,45053828,45059005,45059246,45061323,45063421,45069578,45076696,45078399,45107456,45110078,45111381	44873712,44873987,44961392,44974715,45011019,45020730,45034985,45037689,45053955,45059104,45059466,45061419,45063817,45070357,45076826,45078493,45107536,45110249,45111411	0.679245
heart_male_adult_34_years	chrX	16712880	16712900	16712889	-	High_confidence	4	5	13	0.479456	3.418296	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.769231
heart_male_adult_34_years	chr18	28159170	28159213	28159170	-	High_confidence	15	15	27	0.995793	4.243856	chr18	28159142	28159517	LTR|ERVL|LTR79	+	chr18	28011917	28159297	CDH2|ENST00000413878.1	-	28011917,28013682,28147672,28159148	28011992,28013909,28147784,28159297	0.666667
heart_male_adult_34_years	chr18	35136534	35136535	35136534	+	RAMPAGE_only	18	22	25	0.922031	3.703465	chr18	35136349	35136693	LINE|L2|L2c	-	chr18	35041649	35143470	MAPRE2|ENST00000589699.1	+	35041649,35070194,35097445,35101945,35126947,35132031,35140294	35041766,35070322,35097591,35102159,35127087,35132190,35143470	0.960000
heart_male_adult_34_years	chr2	178614901	178614955	178614946	-	RAMPAGE_only	33	33	264	9.736646	5.920863	chr2	178614941	178615012	DNA|hAT-Tip100|MER91B	-	chr2	178527011	178804642	TTN|ENST00000615779.5	-	178527011,178527445,178528273,178528527,178529959,178530240,178535981,178536937,178537341,178538539,178538945,178539381,178540067,178541281,178542263,178542661,178543068,178543833,178544200,178545387,178545819,178546211,178546599,178547002,178547406,178549569,178549985,178550966,178551629,178553501,178553913,178554452,178554864,178556847,178557252,178557647,178558340,178559310,178576528,178576922,178577601,178577987,178578610,178578805,178579560,178579938,178580321,178581498,178581905,178582295,178582939,178583606,178584275,178584668,178585071,178586504,178587117,178587515,178587898,178588537,178591598,178591977,178592378,178592774,178593172,178593567,178593960,178594343,178595506,178597537,178597907,178598505,178598747,178599145,178599553,178600853,178601264,178601657,178601881,178602001,178602281,178603875,178604707,178604986,178605413,178607020,178607400,178607784,178608177,178608605,178609207,178609683,178610089,178610992,178611371,178611757,178612056,178612276,178612772,178613160,178613750,178614051,178614465,178614846,178615306,178615640,178616478,178616728,178617119,178617324,178617778,178618188,178618583,178619620,178619987,178620216,178620714,178621101,178621474,178621839,178622669,178624464,178625272,178629300,178630240,178630803,178631033,178632146,178632525,178632917,178633186,178633412,178633816,178634365,178634722,178635164,178635439,178635962,178636397,178637368,178639698,178640047,178640540,178641240,178642236,178644547,178645919,178649816,178650163,178650750,178651242,178651452,178651665,178651883,178652095,178652263,178652457,178659004,178659171,178662965,178670217,178671089,178671970,178672406,178672634,178673632,178674313,178675038,178675920,178677620,178678124,178678413,178678746,178679338,178679598,178679893,178680253,178681078,178681375,178681660,178682696,178683210,178683998,178684329,178684665,178684905,178685252,178685517,178688110,178688676,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453,178704146,178704509,178704876,178705173,178706453,178706861,178707525,178709565,178710634,178711061,178711943,178712314,178712696,178713084,178713896,178714291,178714985,178715492,178717094,178717522,178717942,178718321,178718694,178719163,178719553,178719982,178720384,178720920,178721846,178722258,178722658,178723045,178723417,178723855,178724259,178725367,178725767,178727089,178727584,178728109,178728499,178728890,178729287,178729663,178730092,178730504,178730924,178731304,178731692,178732065,178732439,178732833,178733238,178733613,178734327,178734706,178735510,178738081,178739140,178753123,178758983,178764176,178764526,178766380,178767758,178768013,178768672,178769678,178770059,178770411,178771210,178773108,178773461,178773837,178774206,178774920,178775355,178777148,178777419,178777703,178778873,178779228,178779999,178781120,178782211,178782538,178782805,178783719,178784069,178785619,178785847,178789359,178789977,178790707,178792071,178793403,178794398,178794921,178799486,178799824,178800394,178802137,178804551	178527307,178527748,178528427,178529219,178530116,178535849,178536575,178537243,178537917,178538839,178539251,178539966,178540370,178541584,178542563,178542949,178543662,178544115,178544506,178545693,178546116,178546502,178546905,178547305,178549473,178549869,178550273,178551260,178553396,178553807,178554216,178554752,178555152,178557144,178557555,178558235,178558637,178576416,178576831,178577510,178577898,178578185,178578715,178579393,178579848,178580229,178580609,178581804,178582208,178582592,178583227,178583906,178584578,178584968,178585347,178586807,178587417,178587800,178588219,178591504,178591892,178592277,178592660,178593083,178593475,178593867,178594242,178594646,178595809,178597819,178598058,178598654,178599062,178599445,178599850,178601171,178601564,178601787,178601914,178602150,178602590,178604305,178604898,178605295,178605713,178607314,178607685,178608081,178608477,178608908,178609570,178609986,178610389,178611271,178611677,178611954,178612162,178612576,178613072,178613276,178613937,178614348,178614753,178614968,178615484,178615788,178616630,178617013,178617234,178617512,178618081,178618491,178618853,178619887,178620112,178620625,178620993,178621368,178621741,178622008,178622767,178624731,178625396,178629443,178630367,178630943,178631300,178632413,178632792,178633044,178633326,178633676,178634083,178634629,178634849,178635304,178635715,178636241,178636799,178637419,178639788,178640110,178640630,178641315,178642317,178644616,178646030,178649894,178650271,178650834,178651320,178651536,178651749,178651967,178652179,178652347,178652541,178659088,178659255,178663055,178670295,178671170,178672267,178672481,178672703,178673710,178674409,178675113,178675995,178677917,178678208,178678497,178678830,178679416,178679682,178680055,178680331,178681171,178681450,178681738,178682903,178683291,178684082,178684413,178684749,178684989,178685330,178685598,178688224,178688778,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702663,178704407,178704777,178704966,178705357,178706739,178706954,178707813,178709856,178710922,178711349,178712222,178712593,178712975,178713372,178714175,178714573,178715264,178715774,178717382,178717810,178718221,178718600,178718973,178719451,178719832,178720264,178720663,178721202,178722134,178722546,178722937,178723324,178723696,178724143,178724538,178725649,178726046,178727371,178727863,178728397,178728778,178729169,178729566,178729945,178730371,178730792,178731203,178731583,178731971,178732347,178732718,178733121,178733517,178733892,178734606,178734988,178736074,178738360,178741921,178753180,178759172,178764302,178764811,178766612,178767924,178768155,178768933,178769939,178770320,178770675,178771471,178773369,178773725,178774110,178774473,178775202,178777049,178777317,178777584,178777975,178779118,178779462,178780205,178781263,178782427,178782602,178783064,178783785,178784351,178785742,178786141,178789497,178790115,178790845,178792197,178793541,178794551,178795252,178799731,178799910,178800682,178802341,178804642	0.992424
heart_male_adult_34_years	chr3	99962008	99962055	99962049	+	RAMPAGE_only	38	38	199	7.339366	4.989110	chr3	99961963	99962273	LINE|L2|L2c	-	chr3	99817882	100172404	CMSS1|ENST00000491299.5	+	99817882,100141529,100146972,100160429,100162302,100166334,100167737,100171838,100172315	99818043,100141645,100147061,100160501,100162432,100166394,100167840,100171899,100172404	0.929648
heart_male_adult_34_years	chr10	17454588	17454592	17454591	-	High_confidence	3	5	8	0.295050	2.521641	chr10	17454569	17454640	LINE|L1|L1MD2	-	chr10	17320345	17454330	STRG.63857.3	-	17320345,17323064,17327013,17331407,17359513,17379356,17390530,17453558	17321346,17323157,17327126,17331552,17359600,17379425,17390620,17454330	0.750000
heart_male_adult_34_years	chr20	50131130	50131162	50131139	-	High_confidence	92	94	328	12.097045	5.898006	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.996951
heart_male_adult_34_years	chr19	35115816	35115840	35115839	+	High_confidence	4	4	8	0.295050	2.521641	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.500000
heart_male_adult_34_years	chr19	35399505	35399548	35399538	+	High_confidence	13	13	52	1.917824	4.227976	chr19	35399184	35399804	LTR|ERV1|MER49	+	chr19	35399480	35409920	STRG.100032.1	+	35399480,35406584	35399657,35409920	0.923077
heart_male_adult_34_years	chr17	31128483	31128487	31128483	+	High_confidence	38	38	61	2.249755	5.153498	chr17	31128254	31128640	LINE|L1|L1PA13	-	chr17	31128457	31169964	NF1|ENST00000489712.6	+	31128457,31155982,31159009,31163185,31169890	31128507,31156126,31159093,31163376,31169964	0.590164
heart_male_adult_34_years	chr2	119356344	119356371	119356344	-	RAMPAGE_only	2	2	12	0.442575	2.845351	chr2	119356120	119356424	SINE|Alu|AluSx1	+	chr2	119302443	119366682	C2orf76|ENST00000409877.5	-	119302443,119311621,119317465,119321153,119339826,119340158,119366356	119302548,119311703,119317503,119321204,119339971,119340361,119366682	0.833333
heart_male_adult_34_years	chr1	147760601	147760602	147760601	-	High_confidence	6	6	8	0.295050	2.521641	chr1	147760317	147760652	LINE|L2|L2c	+	chr1	147756198	147760606	GJA5|ENST00000579774.2	-	147756198,147760498	147759271,147760606	0.625000
heart_male_adult_34_years	chr10	14877009	14877040	14877027	+	RAMPAGE_only	7	9	29	1.069556	3.954530	chr10	14876839	14877141	LINE|L2|L2	-	chr10	14878782	14904315	SUV39H2|NR_034181.1	+	14878782,14896845,14899538,14901132,14902405	14878919,14897517,14899685,14901262,14904315	0.689655
heart_male_adult_34_years	chrX	19349967	19350022	19350021	+	RAMPAGE_only	4	6	31	1.143318	4.413716	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19352828	19355445	PDHA1|ENST00000479146.1	+	19352828,19354490,19355348	19353173,19354583,19355445	0.677419
heart_male_adult_34_years	chr7	154928492	154928504	154928503	+	High_confidence	17	17	33	1.217081	4.415458	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.939394
heart_male_adult_34_years	chr1	94287334	94287354	94287334	+	High_confidence	4	5	17	0.626981	3.452820	chr1	94287201	94287494	LTR|ERVL-MaLR|THE1D	+	chr1	94287344	94334664	STRG.4527.1	+	94287344,94333308,94334511	94287473,94333409,94334664	0.588235
heart_male_adult_34_years	chr6	162234780	162234819	162234816	+	High_confidence	30	30	136	5.015848	5.333068	chr6	162234836	162234947	SINE|MIR|MIR3	+	chr6	162234801	162240042	STRG.47862.1	+	162234801,162239452	162234918,162240042	0.941176
heart_male_adult_34_years	chr2	201644283	201644284	201644283	+	High_confidence	8	8	12	0.442575	2.845351	chr2	201644034	201644583	LTR|ERV1|LTR45C	-	chr2	201644407	201646145	STRG.17785.1	+	201644407	201646145	0.583333
heart_male_adult_34_years	chr3	184816804	184816817	184816804	+	High_confidence	4	4	11	0.405694	2.921928	chr3	184816627	184817008	DNA|TcMar?|MamRep137	-	chr3	184817205	184834717	VPS8|ENST00000441141.5	+	184817205,184824544,184826162,184832688,184834648	184817244,184824785,184826231,184832819,184834717	0.909091
heart_male_adult_34_years	chr21	29077474	29077487	29077486	+	High_confidence	6	6	13	0.479456	3.022055	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077474	29091576	MAP3K7CL|ENST00000419845.5	+	29077474,29080551,29085812,29091500	29077713,29080708,29085917,29091576	0.538462
heart_male_adult_34_years	chr4	114364914	114364964	114364914	-	High_confidence	124	127	392	14.457444	5.812164	chr4	114364772	114365325	LTR|ERVL-MaLR|MLT1E3	-	chr4	114334835	114364989	STRG.31644.2	-	114334835,114364807	114335244,114364989	0.767857
heart_male_adult_34_years	chr1	11991986	11992002	11991986	+	RAMPAGE_only	8	8	17	0.626981	3.292770	chr1	11991954	11992033	SINE|MIR|MIR	+	chr1	11981991	12013508	STRG.454.1	+	11981991,11982522,11989164,11992554,11996155,11997296,11998769,11998987,12001400,12001768,12001981,12003991,12004508,12004824,12005710,12006537,12007052,12009591,12011495,12013119	11982114,11982590,11989343,11992690,11996318,11997421,11998878,11999095,12001554,12001836,12002103,12004118,12004613,12004927,12005931,12006693,12007249,12009726,12013095,12013508	0.529412
heart_male_adult_34_years	chr1	201374423	201374437	201374436	-	High_confidence	3	3	7	0.258169	2.584963	chr1	201374312	201374476	SINE|MIR|MIRc	+	chr1	201367142	201375368	TNNT2|ENST00000494095.5	-	201367142,201368161,201372026,201373213	201367806,201368227,201372155,201375368	0.857143
HT1080_cytosolic_fraction	chr19	46180850	46180879	46180862	-	High_confidence	189	192	808	35.479038	5.158414	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46173426	46180894	MSTRG.13779.2	-	46173426,46173933,46179485,46180604,46180800	46173520,46174052,46179537,46180689,46180894	0.944307
HT1080_cytosolic_fraction	chr18	30175822	30175875	30175822	-	High_confidence	5	5	18	0.790375	3.499228	chr18	30175744	30175812	LTR|ERV1|LTR1A2	-	chr18	30156175	30176010	MSTRG.12508.1	-	30156175,30175740	30157601,30176010	0.888889
HT1080_cytosolic_fraction	chr6	127366380	127366390	127366380	-	RAMPAGE_only	3	3	6	0.263458	2.584963	chr6	127365309	127366354	LTR|ERV1|MER66-int	-	chr6	127288709	127343609	ECHDC1|ENST00000454859.7	-	127288709,127314815,127316449,127327001,127330808,127343335	127290277,127314896,127316502,127327144,127331030,127343609	0.500000
HT1080_cytosolic_fraction	chr10	6779588	6779631	6779630	+	High_confidence	55	58	201	8.825850	6.460239	chr10	6779419	6779969	LTR|ERVL|MLT2A2	+	chr10	6779597	6842906	LINC00707|NR_038291.1	+	6779597,6781303,6833642,6837973,6840390	6779887,6781486,6833688,6838008,6842906	0.776119
HT1080_cytosolic_fraction	chr20	1418282	1418320	1418318	-	High_confidence	67	87	189	8.298933	5.791536	chr20	1418254	1418815	LTR|ERVL-MaLR|MLT1K	+	chr20	1410709	1418413	MSTRG.15925.1	-	1410709,1417383,1418239	1414314,1417555,1418413	0.539683
HT1080_cytosolic_fraction	chr9	128684459	128684493	128684476	-	RAMPAGE_only	25	25	139	6.103448	4.663483	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.899281
HT1080_cytosolic_fraction	chr1	239408133	239408144	239408141	+	RAMPAGE_only	6	6	22	0.966013	4.011365	chr1	239407991	239408310	LTR|ERVL-MaLR|THE1C	+	chr1	239386564	239886596	CHRM3|ENST00000468573.5	+	239386564,239492708,239545640,239632223,239678185,239718795,239826852,239827251,239886088	239387227,239492807,239545749,239632286,239678288,239718899,239827081,239827378,239886596	0.500000
HT1080_cytosolic_fraction	chr4	89681469	89681505	89681504	+	RAMPAGE_only	8	9	14	0.614736	2.985228	chr4	89681260	89681677	LTR|ERV1|MER61C	+	chr4	89627783	89720172	AC097478.1|ENST00000507916.6	+	89627783,89691284,89719825	89627917,89691405,89720172	1.000000
HT1080_cytosolic_fraction	chr8	106060442	106060476	106060475	-	High_confidence	61	61	151	6.630365	6.511519	chr8	106060473	106060807	LTR|ERVL|LTR18A	+	chr8	105784804	106060477	ZFPM2-AS1|ENST00000524045.6	-	105784804,105787066,105787448,105798324,106059080,106060380	105785217,105787221,105787596,105798442,106059136,106060477	0.529801
HT1080_cytosolic_fraction	chr11	124898485	124898519	124898485	-	High_confidence	6	6	17	0.746465	3.125000	chr11	124898463	124898593	SINE|MIR|MIRb	+	chr11	124895799	124898494	ROBO4|ENST00000526899.5	-	124895799,124896197,124896512,124896931,124898397	124895912,124896318,124896670,124897261,124898494	0.941176
HT1080_cytosolic_fraction	chr8	61578141	61578142	61578141	+	High_confidence	340	341	346	15.192756	5.196559	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.985549
HT1080_cytosolic_fraction	chr4	98929966	98929983	98929982	-	High_confidence	4	4	10	0.439097	2.947703	chr4	98929972	98930125	SINE|MIR|MIR	+	chr4	98878455	98930635	EIF4E|NM_001130679.1	-	98878455,98884921,98886453,98887078,98887888,98891236,98901875,98929094	98881142,98885061,98886546,98887192,98887952,98891332,98901982,98930635	0.900000
HT1080_cytosolic_fraction	chr14	102235451	102235481	102235458	-	High_confidence	36	37	145	6.366907	5.981373	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.862069
HT1080_cytosolic_fraction	chr9	129488726	129488905	129488856	+	High_confidence	66	67	476	20.901017	5.231336	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129513517	MSTRG.25790.3	+	129488911,129493418,129502396,129503322,129504891,129513418	129489299,129493595,129503139,129503672,129505043,129513517	0.997899
HT1080_cytosolic_fraction	chr13	43057850	43057884	43057883	+	RAMPAGE_only	12	12	34	1.492930	4.271371	chr13	43056898	43059152	LINE|L1|L1PB1	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.911765
HT1080_cytosolic_fraction	chr2	218287271	218287283	218287279	-	High_confidence	39	39	81	3.556686	5.206635	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.790123
HT1080_cytosolic_fraction	chr1	42628680	42628682	42628680	+	RAMPAGE_only	32	52	52	2.283304	4.555269	chr1	42628486	42628840	LTR|ERVL-MaLR|THE1A	+	chr1	42534888	42654664	CCDC30|NM_001080850.2	+	42534888,42536475,42539172,42545409,42556155,42566295,42577019,42581359,42589320,42610977,42637236,42642472,42644692,42646134,42653375,42653817	42534989,42536601,42539310,42545579,42556405,42566475,42577229,42581514,42589483,42611090,42637378,42642609,42644807,42646317,42653443,42654664	1.000000
HT1080_cytosolic_fraction	chr1	154671592	154671593	154671592	+	High_confidence	624	627	642	28.190028	6.207167	chr1	154670567	154671998	LTR|ERV1|LTR12C	+	chr1	154671577	154680241	MSTRG.1787.1	+	154671577,154677613	154672084,154680241	0.973520
HT1080_cytosolic_fraction	chr16	54874164	54874165	54874164	-	High_confidence	12	17	17	0.746465	3.499228	chr16	54873972	54874354	LTR|ERVL-MaLR|MSTA	-	chr16	54847246	54874168	CRNDE|ENST00000637011.1	-	54847246,54848526,54848690,54849355,54853437,54874054	54847573,54848607,54848760,54849497,54853568,54874168	0.529412
HT1080_cytosolic_fraction	chr1	20601812	20601813	20601812	+	RAMPAGE_only	7	7	8	0.351278	2.521641	chr1	20601846	20602127	SINE|Alu|AluJo	+	chr1	20589085	20618903	CDA|ENST00000461985.1	+	20589085,20604927,20618451	20589283,20605039,20618903	0.875000
HT1080_cytosolic_fraction	chr10	35412522	35412555	35412546	+	RAMPAGE_only	25	25	97	4.259241	5.216136	chr10	35412569	35412888	SINE|Alu|AluSx	+	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.979381
HT1080_cytosolic_fraction	chr3	11225866	11225919	11225885	-	High_confidence	33	38	197	8.650211	6.237080	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.664975
HT1080_cytosolic_fraction	chr4	102431178	102431180	102431179	-	High_confidence	6	10	14	0.614736	3.546594	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.857143
HT1080_cytosolic_fraction	chrX	7147248	7147273	7147248	+	High_confidence	1	1	6	0.263458	2.584963	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	1.000000
HT1080_cytosolic_fraction	chr12	121942422	121942433	121942432	+	RAMPAGE_only	12	12	21	0.922104	4.070656	chr12	121942092	121942432	LINE|L1|L1MB8	-	chr12	121947668	121959089	WDR66|ENST00000543211.5	+	121947668,121955698,121957073,121958271,121958942	121951530,121955918,121957268,121958522,121959089	0.523810
HT1080_cytosolic_fraction	chr10	6737489	6737492	6737489	+	High_confidence	3	6	12	0.526916	2.918296	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	1.000000
HT1080_cytosolic_fraction	chr7	53495975	53495976	53495975	+	RAMPAGE_only	22	22	22	0.966013	3.970573	chr7	53494839	53496260	LTR|ERV1|LTR12C	+	chr7	53468313	53513626	MSTRG.23150.1	+	53468313,53468622,53512965	53468404,53468771,53513626	0.500000
HT1080_cytosolic_fraction	chr9	90997033	90997038	90997037	+	High_confidence	10	10	17	0.746465	3.454822	chr9	90996845	90997203	LTR|ERVL-MaLR|THE1B	+	chr9	90997053	91001871	AL355607.2|ENST00000563268.1	+	90997053,90997595,91000769	90997124,90997817,91001871	1.000000
HT1080_cytosolic_fraction	chrX	135768190	135768191	135768190	-	High_confidence	12	13	16	0.702555	3.500000	chrX	135767891	135768249	LTR|ERVL|LTR41	-	chrX	135760156	135768191	CT45A3|ENST00000598716.2	-	135760156,135761633,135762107,135764275,135768107	135760409,135761727,135762356,135764450,135768191	1.000000
HT1080_cytosolic_fraction	chr21	16353910	16353911	16353910	+	RAMPAGE_only	35	35	35	1.536840	4.146244	chr21	16353716	16354066	LTR|ERVL-MaLR|THE1A	+	chr21	16330603	16607268	MIR99AHG|ENST00000602339.5	+	16330603,16391613,16487489,16537378,16606993	16330711,16391685,16487538,16537439,16607268	0.714286
HT1080_cytosolic_fraction	chr3	139344535	139344548	139344547	+	High_confidence	1711	1717	3741	164.266189	6.030258	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.960438
HT1080_cytosolic_fraction	chr11	5505651	5505652	5505651	-	High_confidence	2420	2481	2743	120.444308	7.195028	chr11	5505485	5505844	LTR|ERVL-MaLR|THE1B	-	chr11	5340324	5505652	OR51B5|ENST00000415970.6	-	5340324,5345772,5346261,5346875,5505568	5341362,5345899,5346353,5346910,5505652	0.612104
HT1080_cytosolic_fraction	chr1	88892609	88892635	88892609	-	High_confidence	4	6	12	0.526916	3.418296	chr1	88892399	88892769	LTR|ERV1|MER51A	-	chr1	88852637	88891618	GTF2B|NM_001514.5	-	88852637,88857205,88859881,88860139,88863980,88887260,88891482	88853346,88857487,88860011,88860286,88864114,88887367,88891618	1.000000
HT1080_cytosolic_fraction	chr6	57961598	57961648	57961647	+	High_confidence	5	5	15	0.658646	3.640224	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961547	57972280	AL445250.1|ENST00000420759.2	+	57961547,57971594,57972093	57961742,57971656,57972280	0.600000
HT1080_cytosolic_fraction	chr5	140697987	140698006	140697987	+	High_confidence	2	2	7	0.307368	2.521641	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140698679	140704502	ZMAT2|ENST00000519913.6	+	140698679,140700818,140702005,140703917,140704425	140698831,140700912,140702129,140703991,140704502	0.571429
HT1080_cytosolic_fraction	chr7	32043848	32043894	32043848	-	High_confidence	8	10	49	2.151575	5.410868	chr7	32043807	32043898	SINE|MIR|MIRc	+	chr7	31753075	32043891	MSTRG.23029.3	-	31753075,31775663,31809030,31815923,31823072,31824866,31828291,31837179,31837869,31847967,31850640,31864941,31873291,31877969,31878995,31880746,32043787	31753553,31775732,31809108,31816154,31823248,31824987,31828373,31837300,31837971,31848096,31850741,31865082,31873408,31878036,31879178,31880860,32043891	0.775510
HT1080_cytosolic_fraction	chr2	174118081	174118127	174118084	-	RAMPAGE_only	59	74	198	8.694121	5.733940	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075408	174124315	OLA1|ENST00000392560.6	-	174075408,174078967,174081151,174081923,174123179,174123594,174124263	174075527,174079090,174081248,174082064,174123277,174123675,174124315	0.550505
HT1080_cytosolic_fraction	chr18	77989884	77989892	77989891	-	RAMPAGE_only	4	4	11	0.483007	2.732159	chr18	77989671	77989901	SINE|MIR|MIR	-	chr18	77971293	77993722	MSTRG.12772.1	-	77971293,77979494,77982519,77989818,77990092,77993634	77976675,77979629,77986997,77989914,77990174,77993722	0.818182
HT1080_cytosolic_fraction	chr9	39809827	39809879	39809858	-	High_confidence	5	8	40	1.756388	3.253863	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803687	39810063	MSTRG.25232.3	-	39803687,39809485,39809730	39803859,39809615,39810063	0.875000
HT1080_cytosolic_fraction	chr17	69175818	69175837	69175818	-	High_confidence	3	3	10	0.439097	2.725481	chr17	69175735	69175831	DNA|TcMar-Tigger|MER44B	-	chr17	69148498	69175781	ABCA10|ENST00000519732.5	-	69148498,69149032,69149983,69152042,69152361,69153304,69153470,69153830,69154234,69155018,69155804,69156831,69164073,69164963,69174280,69175405,69175618	69148925,69149088,69150063,69152183,69152481,69153399,69153546,69154009,69154326,69155136,69155925,69156923,69164154,69165083,69174394,69175513,69175781	0.800000
HT1080_cytosolic_fraction	chr20	37298760	37298761	37298760	+	RAMPAGE_only	22	22	22	0.966013	4.004886	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
HT1080_cytosolic_fraction	chr6	43013392	43013393	43013392	-	High_confidence	42	43	59	2.590672	5.431173	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.983051
HT1080_cytosolic_fraction	chr7	158740224	158740266	158740240	-	RAMPAGE_only	3	3	18	0.790375	4.087463	chr7	158740209	158740388	LTR|ERV1|MER49	+	chr7	158733612	158744217	ESYT2|ENST00000435514.3	-	158733612,158734421,158735502,158737047,158739022,158741522,158743528	158734252,158734471,158735608,158737179,158739121,158741896,158744217	0.555556
HT1080_cytosolic_fraction	chr1	54413473	54413493	54413492	-	High_confidence	75	75	184	8.079385	6.081738	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54412707	54413466	SSBP3|ENST00000448572.1	-	54412707,54413080,54413355	54412877,54413253,54413466	0.614130
HT1080_cytosolic_fraction	chr12	68840691	68840775	68840691	+	RAMPAGE_only	3	3	35	1.536840	4.264578	chr12	68840533	68840806	SINE|Alu|AluSz	-	chr12	68809016	68845544	MDM2|NM_001278462.1	+	68809016,68809207,68813553,68835828,68836671,68839273	68809086,68809292,68813628,68835984,68836749,68845544	1.000000
HT1080_cytosolic_fraction	chr1	112956812	112956853	112956852	+	High_confidence	4	4	18	0.790375	3.734522	chr1	112956705	112956908	SINE|MIR|MIR	+	chr1	112956460	112975430	SLC16A1-AS1|ENST00000428411.5	+	112956460,112960476,112968034	112957722,112960575,112975430	0.722222
HT1080_cytosolic_fraction	chr1	155637591	155637604	155637603	-	RAMPAGE_only	19	19	31	1.361201	3.656565	chr1	155637451	155637661	LTR|ERV1|LTR12F	-	chr1	155626777	155648573	MSTRG.1839.12	-	155626777,155634769,155637393,155648405	155627727,155634846,155637492,155648573	0.903226
HT1080_cytosolic_fraction	chr8	116648874	116648917	116648874	-	RAMPAGE_only	6	6	29	1.273381	4.028605	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.896552
HT1080_cytosolic_fraction	chr1	94325409	94325410	94325409	-	High_confidence	6	6	6	0.263458	2.584963	chr1	94325236	94325556	LINE|RTE-X|L4_A_Mam	-	chr1	94318478	94324569	AC097059.2|ENST00000414039.1	-	94318478,94324406	94318907,94324569	0.500000
HT1080_cytosolic_fraction	chr20	37223228	37223231	37223228	+	RAMPAGE_only	4	4	8	0.351278	2.521641	chr20	37222928	37223285	LTR|ERVL-MaLR|MLT1I	-	chr20	37179160	37241619	RPN2|ENST00000373622.9	+	37179160,37184179,37199049,37203884,37204766,37207272,37210046,37213759,37223877,37225687,37228549,37229972,37232295,37234019,37236579,37238401,37241302	37179369,37184373,37199225,37203960,37204901,37207449,37210165,37213865,37223969,37225802,37228744,37230059,37232391,37234095,37236709,37238449,37241619	0.750000
HT1080_cytosolic_fraction	chr11	114295035	114295079	114295050	+	High_confidence	5	5	20	0.878194	3.892407	chr11	114294850	114295386	LTR|ERV1|LTR35A	-	chr11	114295036	114312560	MSTRG.4931.4	+	114295036,114296051,114297950,114312044	114295416,114296710,114298158,114312560	0.900000
HT1080_cytosolic_fraction	chr7	134432378	134432458	134432435	-	High_confidence	37	44	262	11.504342	5.488949	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.950382
HT1080_cytosolic_fraction	chr11	64242588	64242612	64242611	+	High_confidence	16	21	52	2.283304	4.496032	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
HT1080_cytosolic_fraction	chr10	35412920	35413021	35412969	+	RAMPAGE_only	17	17	102	4.478789	4.722416	chr10	35412983	35413034	LINE|L2|L2a	+	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.950980
HT1080_cytosolic_fraction	chr1	39026130	39026191	39026130	+	High_confidence	6	7	39	1.712478	4.013111	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.948718
HT1080_cytosolic_fraction	chr12	122888901	122888926	122888901	-	RAMPAGE_only	7	8	20	0.878194	3.884184	chr12	122888843	122888910	LINE|L2|L2	+	chr12	122867414	122890159	VPS37B|ENST00000371248.3	-	122867414,122868479,122870889,122888519	122867607,122868562,122871061,122890159	0.900000
HT1080_cytosolic_fraction	chr14	73463610	73463634	73463624	-	High_confidence	84	87	381	16.729596	6.303770	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73460934	73463618	AC005280.2|ENST00000557577.1	-	73460934,73462528,73463474	73461264,73462689,73463618	0.674541
HT1080_cytosolic_fraction	chr7	107580242	107580267	107580264	+	High_confidence	1354	1355	7243	318.037960	7.312599	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.931796
HT1080_cytosolic_fraction	chr3	157533748	157533749	157533748	-	High_confidence	6	6	7	0.307368	2.584963	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157428321	157533619	VEPH1|ENST00000479987.5	-	157428321,157460180,157470313,157533512	157428488,157460355,157470529,157533619	0.857143
HT1080_cytosolic_fraction	chr1	17755328	17755373	17755334	+	High_confidence	698	1006	2260	99.235923	6.346350	chr1	17755152	17755695	LTR|ERVL|LTR41	+	chr1	17755312	17827061	MSTRG.380.1	+	17755312,17793606,17800617,17822984,17825766	17755504,17793826,17800737,17823356,17827061	0.984071
HT1080_cytosolic_fraction	chr6	148457856	148457859	148457856	-	High_confidence	13	14	30	1.317291	4.556088	chr6	148457676	148457982	LTR|ERVL-MaLR|THE1C	-	chr6	148449835	148457862	MSTRG.22612.1	-	148449835,148457759	148453281,148457862	0.866667
HT1080_cytosolic_fraction	chr12	20822528	20822558	20822547	+	High_confidence	103	109	326	14.314562	6.344211	chr12	20822186	20822617	LTR|ERV1|LTR7	-	chr12	20822462	20916911	MSTRG.5404.7	+	20822462,20855027,20858438,20861016,20862411,20862755,20875234,20877771,20879435,20880854,20883417,20898435,20901349,20916003	20822673,20855169,20858571,20861138,20862558,20862854,20875477,20877936,20879631,20881020,20883602,20898500,20901467,20916911	0.938650
HT1080_cytosolic_fraction	chr12	54187904	54187905	54187904	-	High_confidence	13	13	15	0.658646	3.323231	chr12	54187852	54187993	LINE|L2|L2c	-	chr12	54181452	54188607	SMUG1|ENST00000506595.5	-	54181452,54182503,54183655,54188514	54181647,54182623,54183959,54188607	1.000000
HT1080_cytosolic_fraction	chr6	73697857	73697865	73697857	-	RAMPAGE_only	9	9	16	0.702555	3.327820	chr6	73697648	73697989	LTR|ERVL-MaLR|MLT1J2	-	chr6	73693902	73696131	AL590428.1|ENST00000428865.2	-	73693902,73695831	73695575,73696131	0.875000
HT1080_cytosolic_fraction	chr17	35089895	35089906	35089900	-	High_confidence	5	5	14	0.614736	3.664498	chr17	35089759	35089896	SINE|MIR|MIRb	-	chr17	35009111	35089329	RFFL|NR_037713.1	-	35009111,35014739,35016369,35017522,35021370,35026373,35089104	35012149,35014763,35016580,35017606,35021781,35026561,35089329	0.500000
HT1080_cytosolic_fraction	chr12	52836951	52836963	52836951	-	RAMPAGE_only	6	7	17	0.746465	3.577820	chr12	52836817	52836901	SINE|MIR|MIR	-	chr12	52821446	52834295	KRT79|ENST00000330553.5	-	52821446,52822344,52823015,52823886,52824197,52830022,52830231,52831405,52833783	52822077,52822379,52823236,52824012,52824362,52830118,52830292,52831626,52834295	0.941176
HT1080_cytosolic_fraction	chr12	93773375	93773412	93773408	+	RAMPAGE_only	36	47	120	5.269164	5.327657	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.750000
HT1080_cytosolic_fraction	chr1	209651166	209651178	209651177	-	High_confidence	3	4	7	0.307368	2.807355	chr1	209651125	209651277	SINE|MIR|MIR3	+	chr1	209614869	209651334	LAMB3|NM_001017402.1	-	209614869,209616470,209617409,209617906,209618451,209622535,209622981,209623504,209623839,209625647,209626866,209627382,209628034,209629736,209630614,209632582,209633069,209634446,209637907,209638533,209649963,209650916	209615407,209616624,209617586,209618048,209618659,209622680,209623179,209623725,209624000,209626026,209626978,209627579,209628190,209629925,209630735,209632776,209633133,209634638,209637981,209638648,209650118,209651334	1.000000
HT1080_cytosolic_fraction	chr11	72758455	72758517	72758516	-	High_confidence	5	5	17	0.746465	3.169249	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72759309	STARD10|ENST00000537351.5	-	72754728,72755121,72755700,72757766,72758529,72759233	72754782,72755142,72755753,72757884,72758633,72759309	0.647059
HT1080_cytosolic_fraction	chr3	195749252	195749278	195749277	-	RAMPAGE_only	5	5	25	1.097743	3.795089	chr3	195749118	195749285	LINE|L1|L1ME4a	+	chr3	195746764	195778810	MUC4|ENST00000339251.9	-	195746764,195748901,195750888,195751206,195752372,195753050,195754212,195757146,195759123,195760883,195761483,195762086,195762854,195763432,195764044,195764996,195765269,195766662,195769049,195770215,195771651,195774171,195778302,195778789	195747380,195749064,195751112,195751271,195752446,195753230,195754372,195757328,195759261,195761117,195761585,195762254,195762945,195763641,195764164,195765122,195765449,195766751,195769152,195770371,195771740,195774305,195778455,195778810	0.920000
HT1080_cytosolic_fraction	chr11	47214671	47214672	47214671	+	High_confidence	5	5	7	0.307368	2.807355	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214569	47234653	DDB2|ENST00000614825.4	+	47214569,47215072,47216335,47216857,47232813,47234572	47214674,47215263,47216472,47217049,47232959,47234653	1.000000
HT1080_cytosolic_fraction	chr2	172438314	172438316	172438315	+	RAMPAGE_only	17	20	28	1.229472	4.356558	chr2	172437109	172438442	LINE|L2|L2a	-	chr2	172427788	172506282	ITGA6|ENST00000409080.5	+	172427788,172465538,172467480,172469124,172470973,172474054,172474928,172475596,172476394,172479640,172479989,172484781,172485120,172487022,172487263,172487546,172487727,172487960,172488125,172489484,172491023,172491220,172491424,172497974,172504090	172427970,172465663,172467560,172469380,172471105,172474265,172475122,172475685,172476513,172479739,172480051,172484942,172485264,172487138,172487453,172487630,172487807,172488038,172488228,172489658,172491122,172491331,172491523,172498100,172506282	0.928571
HT1080_cytosolic_fraction	chr12	126772280	126772337	126772336	-	High_confidence	6	6	26	1.141652	3.749275	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126748055	126772356	LINC00944|ENST00000542248.5	-	126748055,126760931,126763414,126772078	126748127,126761045,126763498,126772356	0.846154
HT1080_cytosolic_fraction	chr4	168138416	168138492	168138463	+	High_confidence	21	22	133	5.839990	5.520990	chr4	168138456	168139278	LINE|L1|L1P4	-	chr4	168138346	168187690	MSTRG.20033.2	+	168138346,168139485,168162527,168164197,168165246,168177739,168177889,168179216,168181682,168184558,168187365	168138519,168139580,168162641,168164288,168165326,168177793,168177983,168179312,168181741,168184681,168187690	0.962406
HT1080_cytosolic_fraction	chr2	54533172	54533173	54533172	+	RAMPAGE_only	15	18	22	0.966013	3.621928	chr2	54532855	54533349	DNA|TcMar-Tigger|Tigger7	-	chr2	54558393	54662308	SPTBN1|NM_178313.2	+	54558393,54599091,54612160,54616206,54617607,54618077,54621399,54622299,54623478,54624803,54625931,54628096,54628932,54629891,54630854,54632565,54637712,54642982,54644322,54645228,54645927,54646193,54647130,54648985,54649614,54653608,54655069,54655913,54657849,54659153,54659935	54558887,54599243,54612334,54616298,54617688,54618193,54621512,54622487,54623596,54624962,54626234,54628250,54629803,54630029,54631611,54632768,54637803,54643129,54644586,54645453,54646017,54646475,54647261,54649190,54649989,54653853,54655208,54655998,54658046,54659266,54662308	0.909091
HT1080_cytosolic_fraction	chr4	65241761	65241820	65241813	-	High_confidence	7	8	54	2.371124	4.794261	chr4	65241173	65242746	LTR|ERV1|MER52A	-	chr4	65225866	65241814	AC018683.1|ENST00000649562.1	-	65225866,65238383,65241181	65226010,65238464,65241814	0.796296
HT1080_cytosolic_fraction	chr9	20732420	20732429	20732428	+	RAMPAGE_only	12	16	39	1.712478	4.406821	chr9	20732128	20733009	LINE|L2|L2b	-	chr9	20726350	20770133	FOCAD|ENST00000604103.1	+	20726350,20740235,20758089,20764873,20770031	20726432,20740340,20758191,20765073,20770133	0.923077
HT1080_cytosolic_fraction	chr3	114624940	114625007	114625006	-	High_confidence	26	32	128	5.620442	4.746857	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.828125
HT1080_cytosolic_fraction	chr21	45593653	45593667	45593653	+	High_confidence	25	26	41	1.800298	4.653056	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	0.926829
HT1080_cytosolic_fraction	chr1	16981575	16981607	16981575	-	High_confidence	4	4	12	0.526916	2.584963	chr1	16981567	16981905	LTR|ERV1|LTR64	+	chr1	16974501	16981586	MFAP2|NM_001135247.1	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16981513	16975023,16975342,16975730,16976545,16976794,16976923,16977195,16978314,16981586	0.750000
HT1080_cytosolic_fraction	chr2	74917992	74918041	74917992	+	High_confidence	3	3	10	0.439097	2.921928	chr2	74917679	74918502	LINE|L2|L2a	-	chr2	74918147	74932794	LINC01291|ENST00000435984.1	+	74918147,74931417,74932660	74918459,74931536,74932794	0.600000
HT1080_cytosolic_fraction	chr2	110642789	110642790	110642789	-	High_confidence	40	44	45	1.975937	4.425810	chr2	110642693	110642986	SINE|Alu|AluJr	-	chr2	110641325	110642790	BUB1|ENST00000478175.1	-	110641325,110641641,110642118,110642448	110641464,110641803,110642234,110642790	0.866667
HT1080_cytosolic_fraction	chr18	14971532	14971545	14971543	-	RAMPAGE_only	3	5	10	0.439097	2.921928	chr18	14971322	14971848	LTR|ERVL-MaLR|MLT1G3	+	chr18	14969605	14970468	LINC01444|ENST00000580867.1	-	14969605,14969877	14969778,14970468	0.800000
HT1080_cytosolic_fraction	chr10	80344732	80344733	80344732	+	High_confidence	8	8	8	0.351278	3.000000	chr10	80344537	80344891	LTR|ERVL-MaLR|THE1A	+	chr10	80344744	80368073	DYDC2|NR_070308.1	+	80344744,80352436,80356259,80362434,80362950,80366687	80344815,80352617,80356596,80362590,80363073,80368073	0.875000
HT1080_cytosolic_fraction	chr15	74738466	74738467	74738466	-	RAMPAGE_only	7	7	10	0.439097	3.169925	chr15	74738305	74738647	LTR|ERVL-MaLR|THE1B	-	chr15	74719541	74725610	CYP1A1|ENST00000379727.7	-	74719541,74720966,74721198,74721413,74721590,74722272,74725440	74720774,74721053,74721322,74721503,74721717,74723126,74725610	0.900000
HT1080_cytosolic_fraction	chr10	98391164	98391200	98391199	-	RAMPAGE_only	24	27	131	5.752171	5.367856	chr10	98391143	98391387	LINE|L2|L2c	+	chr10	98383564	98411877	PYROXD2|ENST00000483923.5	-	98383564,98384946,98387200,98390597,98390870,98392431,98392941,98395195,98395390,98397344,98400101,98407581,98407903,98410612,98411174	98383868,98385067,98387307,98390754,98391082,98392566,98393083,98395293,98395452,98397498,98400257,98407655,98407997,98410958,98411877	0.977099
HT1080_cytosolic_fraction	chr19	571743	571774	571754	-	High_confidence	4	7	24	1.053833	3.653997	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.916667
HT1080_cytosolic_fraction	chr1	223230702	223230706	223230705	-	High_confidence	6	9	16	0.702555	3.250000	chr1	223230613	223230720	SINE|MIR|MIRb	-	chr1	223227614	223230747	SUSD4|ENST00000470249.1	-	223227614,223229196,223230537	223227738,223229388,223230747	0.937500
HT1080_cytosolic_fraction	chr7	99272846	99272910	99272875	+	High_confidence	129	129	1294	56.819152	7.167603	chr7	99272913	99272966	LINE|L2|L2b	+	chr7	99272809	99311130	MSTRG.23423.4	+	99272809,99273341,99277538,99279509,99280875,99283564,99283872,99284844,99285381,99287891,99289286,99291322,99292311,99294017,99296700,99297659,99297891,99299465,99301600,99303064,99304585,99305835,99306608,99310738	99273077,99273423,99277712,99279737,99280980,99283651,99284018,99284935,99285438,99288137,99289404,99291450,99292508,99294150,99296917,99297796,99297995,99299658,99301804,99303190,99304756,99306036,99306836,99311130	0.982226
HT1080_cytosolic_fraction	chr19	48868613	48868666	48868636	-	High_confidence	7	7	47	2.063756	4.950420	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868632	PLEKHA4|ENST00000263265.10	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868632	0.978723
HT1080_cytosolic_fraction	chr14	103712932	103712933	103712932	-	High_confidence	5	5	7	0.307368	2.807355	chr14	103712860	103713310	LTR|ERV1|MER31A	+	chr14	103697617	103712104	XRCC3|ENST00000553264.5	-	103697617,103699132,103699363,103703172,103707002,103708521,103711032,103711465	103699017,103699179,103699576,103703327,103707215,103708659,103711245,103712104	1.000000
HT1080_cytosolic_fraction	chr8	99893444	99893492	99893444	-	High_confidence	7	7	49	2.151575	4.517272	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	1.000000
HT1080_cytosolic_fraction	chr6	13794233	13794275	13794270	-	RAMPAGE_only	8	8	26	1.141652	3.688722	chr6	13794117	13794268	SINE|Alu|FLAM_C	-	chr6	13787133	13801345	MCUR1|ENST00000607303.1	-	13787133,13788645,13791877,13793893,13798832,13800340,13801287	13787355,13788704,13791992,13793947,13798904,13800382,13801345	0.884615
HT1080_cytosolic_fraction	chr14	40954675	40954722	40954688	+	High_confidence	11	12	53	2.327214	4.810389	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954710	41141048	LOC644919|NR_109758.1	+	40954710,40962789,40974339,41140833	40954952,40962842,40974390,41141048	0.622642
HT1080_cytosolic_fraction	chr12	127060613	127060614	127060613	+	High_confidence	965	1116	1225	53.789383	6.208563	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060473	127170269	MSTRG.6558.1	+	127060473,127119553,127145711,127150201,127150411,127165251,127168364	127061334,127119678,127149478,127150312,127154344,127165403,127170269	0.984490
HT1080_cytosolic_fraction	chr9	32997349	32997350	32997349	-	High_confidence	12	13	14	0.614736	3.664498	chr9	32997347	32997748	LINE|L2|L2c	-	chr9	32972762	32997360	APTX|ENST00000479656.5	-	32972762,32974457,32984630,32985970,32987543,32988078,32989758,32997242	32973652,32974561,32984857,32986030,32987842,32988124,32989895,32997360	1.000000
HT1080_cytosolic_fraction	chr20	44959327	44959364	44959363	+	RAMPAGE_only	7	7	12	0.526916	3.251629	chr20	44959390	44959947	LINE|L2|L2b	+	chr20	44966473	45079959	STK4|ENST00000372806.7	+	44966473,44972077,44978442,44981828,44987131,44995089,44997168,45000391,45001166,45024972,45075017	44966603,44972158,44978571,44981943,44987296,44995257,44997306,45000520,45001353,45025130,45079959	0.750000
HT1080_cytosolic_fraction	chr9	134872635	134872636	134872635	-	High_confidence	3415	3752	4221	185.342845	7.178713	chr9	134872476	134872826	LTR|ERVL-MaLR|THE1B	-	chr9	134810103	134872627	MSTRG.25861.2	-	134810103,134818172,134872548	134818051,134826058,134872627	0.902867
HT1080_cytosolic_fraction	chr14	59687803	59687846	59687803	-	High_confidence	8	8	23	1.009923	4.186704	chr14	59686455	59689984	LINE|L1|L1PA15-16	+	chr14	59596013	59687845	MSTRG.7654.6	-	59596013,59603064,59603211,59603851,59605367,59607284,59687714	59596787,59603123,59603258,59603921,59605506,59607492,59687845	0.521739
HT1080_cytosolic_fraction	chr9	127522802	127522844	127522833	-	RAMPAGE_only	9	16	65	2.854131	5.066784	chr9	127522529	127523072	LINE|L2|L2a	+	chr9	127507171	127568953	MSTRG.25707.4	-	127507171,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127561147,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127561237,127568953	0.938462
HT1080_cytosolic_fraction	chr2	3536476	3536516	3536496	-	High_confidence	7	7	33	1.449020	4.671781	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.757576
HT1080_cytosolic_fraction	chr19	45424375	45424396	45424380	-	High_confidence	16	19	98	4.303151	5.637683	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	1.000000
HT1080_cytosolic_fraction	chr16	28426400	28426434	28426422	-	High_confidence	18	18	91	3.995783	4.179459	chr16	28426142	28426617	LTR|ERVL|LTR41C	-	chr16	28412783	28426437	MSTRG.9807.1	-	28412783,28414468,28426183	28412956,28414983,28426437	0.956044
HT1080_cytosolic_fraction	chr15	96285468	96285518	96285503	-	RAMPAGE_only	8	10	44	1.932027	4.706718	chr15	96285441	96285601	LINE|RTE-BovB|MamRTE1	+	chr15	96266385	96282971	NR2F2-AS1|ENST00000561402.5	-	96266385,96269847,96271702,96282831	96266589,96269996,96271798,96282971	0.727273
HT1080_cytosolic_fraction	chr6	46888707	46888738	46888707	-	RAMPAGE_only	4	4	18	0.790375	3.969816	chr6	46888701	46888790	LINE|L2|L2	-	chr6	46852504	46921977	ADGRF5|NM_001098518.1	-	46852504,46855973,46856717,46856866,46858128,46860714,46862887,46865041,46866924,46868882,46871842,46878201,46879817,46881454,46882048,46883558,46884094,46888334,46900028,46906660,46921712	46854071,46856058,46856777,46856908,46859523,46860894,46863096,46865197,46867137,46869092,46872013,46878405,46880039,46881597,46882107,46883665,46884271,46888505,46900083,46906786,46921977	0.666667
HT1080_cytosolic_fraction	chr3	134485387	134485494	134485443	-	High_confidence	23	26	213	9.352766	6.226078	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.957746
HT1080_cytosolic_fraction	chr5	33049393	33049489	33049398	-	High_confidence	175	199	646	28.365666	6.951542	chr5	33049026	33055088	LINE|L1|L1M2a	+	chr5	33008123	33049401	MSTRG.20301.3	-	33008123,33013657,33015933,33023074,33049234	33011560,33015718,33016047,33023327,33049401	0.588235
HT1080_cytosolic_fraction	chr7	112995651	112995671	112995651	-	High_confidence	5	5	25	1.097743	4.175736	chr7	112995411	112995725	LINE|L2|L2	+	chr7	112954634	112995643	HRAT17|NR_110162.1	-	112954634,112956521,112973604,112980045,112986535,112995567	112954768,112956702,112973672,112980164,112986664,112995643	0.680000
HT1080_cytosolic_fraction	chr4	99906530	99906541	99906540	-	High_confidence	3	3	9	0.395187	2.500000	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.888889
HT1080_cytosolic_fraction	chr6	118651542	118651593	118651592	-	High_confidence	18	18	69	3.029769	5.405423	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.971014
HT1080_cytosolic_fraction	chr8	21059951	21059952	21059951	-	RAMPAGE_only	19	21	21	0.922104	3.221097	chr8	21059785	21060144	LTR|ERVL-MaLR|THE1B	-	chr8	20952644	20973877	AC015468.3|ENST00000518967.1	-	20952644,20973732	20952916,20973877	0.619048
HT1080_cytosolic_fraction	chr21	45004700	45004715	45004700	-	High_confidence	2	2	7	0.307368	2.521641	chr21	45004605	45004930	LINE|L1|L1MB7	-	chr21	44999207	45004727	PICSAR|ENST00000615826.1	-	44999207,45004443	44999656,45004727	0.714286
HT1080_cytosolic_fraction	chr10	35412763	35412800	35412799	+	RAMPAGE_only	22	22	102	4.478789	4.778124	chr10	35412569	35412888	SINE|Alu|AluSx	+	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.882353
HT1080_cytosolic_fraction	chr3	108471495	108471523	108471499	-	RAMPAGE_only	6	6	24	1.053833	4.053509	chr3	108471413	108471815	LTR|ERV1|MER31B	+	chr3	108380368	108529322	MYH15|NM_014981.1	-	108380368,108383594,108384686,108388969,108391759,108394030,108398636,108399074,108405337,108408279,108410582,108414231,108416811,108421087,108428491,108430831,108437553,108439736,108441017,108444639,108454005,108455735,108456765,108459361,108460299,108463110,108464637,108470041,108470697,108476396,108485090,108486422,108492499,108493113,108495779,108498051,108499454,108500117,108501711,108505722,108510442,108529262	108381559,108383729,108384782,108389074,108391930,108394156,108398840,108399267,108405453,108408404,108410932,108414428,108416930,108421214,108428881,108430922,108437699,108439913,108441260,108444895,108454142,108455859,108456883,108459449,108460367,108463243,108464814,108470212,108470847,108476515,108485229,108486526,108492595,108493177,108495872,108498145,108499482,108500274,108501855,108505829,108510587,108529322	1.000000
HT1080_cytosolic_fraction	chr1	210439435	210439451	210439448	+	High_confidence	10	11	48	2.107666	5.198102	chr1	210438946	210439615	LTR|ERVL|ERVL-B4-int	-	chr1	210439445	210676296	MSTRG.2330.9	+	210439445,210464504,210513152,210587897,210623525,210674287	210439478,210464655,210513188,210588099,210623670,210676296	0.729167
HT1080_cytosolic_fraction	chr2	37829397	37829398	37829397	-	High_confidence	11	11	12	0.526916	3.277613	chr2	37829373	37829510	LTR|ERVL|LTR79	-	chr2	37826246	37829432	LINC00211|ENST00000413792.5	-	37826246,37828932,37829247	37827878,37829038,37829432	0.666667
HT1080_cytosolic_fraction	chr18	30175965	30176013	30175965	-	High_confidence	333	357	1673	73.460929	5.312737	chr18	30175809	30176113	LTR|ERV1|LTR1A2	-	chr18	30156175	30176010	MSTRG.12508.1	-	30156175,30175740	30157601,30176010	0.977884
HT1080_cytosolic_fraction	chr12	127060443	127060505	127060497	+	High_confidence	41	41	115	5.049616	5.394313	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060473	127170269	MSTRG.6558.1	+	127060473,127119553,127145711,127150201,127150411,127165251,127168364	127061334,127119678,127149478,127150312,127154344,127165403,127170269	0.991304
HT1080_cytosolic_fraction	chr1	222064772	222064773	222064772	-	High_confidence	75	82	84	3.688415	4.611927	chr1	222064600	222064953	LTR|ERVL-MaLR|THE1B	-	chr1	222041704	222064763	LINC01705|ENST00000438158.1	-	222041704,222058413,222064684	222041922,222058678,222064763	0.880952
HT1080_cytosolic_fraction	chr22	50785234	50785272	50785234	+	RAMPAGE_only	3	3	15	0.658646	2.923231	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.800000
HT1080_cytosolic_fraction	chr19	54042560	54042566	54042565	-	RAMPAGE_only	24	24	53	2.327214	4.442280	chr19	54042452	54042659	SINE|MIR|MIR	+	chr19	54040824	54058423	VSTM1|ENST00000419106.5	-	54040824,54041778,54041915,54042168,54051409,54058305	54041080,54041816,54041953,54042196,54051448,54058423	0.962264
HT1080_cytosolic_fraction	chr14	34650751	34650891	34650890	-	RAMPAGE_only	16	16	148	6.498636	5.750478	chr14	34650761	34650903	LTR|ERVL-MaLR|MLT1J2	+	chr14	34562408	34630183	SNX6|ENST00000362031.8	-	34562408,34567685,34567853,34575755,34581560,34586229,34593044,34597549,34603347,34605595,34608029,34609637,34629906,34630110	34563175,34567771,34568013,34575842,34581600,34586305,34593150,34597645,34603471,34605717,34608140,34609742,34629954,34630183	0.912162
HT1080_cytosolic_fraction	chr10	33216816	33216817	33216816	-	RAMPAGE_only	10	10	14	0.614736	3.180833	chr10	33216784	33216910	LINE|L2|L2c	+	chr10	33194371	33213561	NRP1|ENST00000466932.1	-	33194371,33213391	33194724,33213561	0.642857
HT1080_cytosolic_fraction	chr17	48460333	48460334	48460333	+	High_confidence	15	15	15	0.658646	3.456565	chr17	48460169	48460560	LTR|ERVL-MaLR|MLT1I	+	chr17	48460369	48466040	AC036222.1|ENST00000579972.1	+	48460369,48465446	48460476,48466040	1.000000
HT1080_cytosolic_fraction	chr8	39083050	39083066	39083065	+	RAMPAGE_only	5	5	15	0.658646	3.323231	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.866667
HT1080_cytosolic_fraction	chr2	3536839	3536873	3536845	-	High_confidence	11	11	90	3.951873	5.747191	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.944444
HT1080_cytosolic_fraction	chr9	113650917	113650992	113650945	+	High_confidence	13	14	101	4.434880	4.946945	chr9	113650949	113651170	SINE|MIR|MIR	+	chr9	113650955	113682855	AL157702.2|ENST00000428292.1	+	113650955,113652016,113681905	113651164,113652080,113682855	0.990099
HT1080_cytosolic_fraction	chr1	27155490	27155491	27155490	-	High_confidence	11	11	12	0.526916	2.594907	chr1	27155432	27155584	SINE|MIR|MIR	+	chr1	27098808	27155130	SLC9A1|NM_003047.4	-	27098808,27101202,27101724,27102015,27102384,27102672,27103222,27105884,27107647,27109526,27113825,27153982	27100644,27101275,27101826,27102130,27102558,27102743,27103312,27106087,27107865,27109777,27114286,27155130	0.916667
HT1080_cytosolic_fraction	chr19	49086510	49086547	49086546	+	High_confidence	2	2	6	0.263458	2.584963	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.500000
HT1080_cytosolic_fraction	chr16	66408512	66408542	66408538	+	High_confidence	10	11	59	2.590672	5.306372	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.779661
HT1080_cytosolic_fraction	chr1	166850306	166850328	166850306	+	RAMPAGE_only	2	2	7	0.307368	2.807355	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.857143
HT1080_cytosolic_fraction	chr5	152972348	152972349	152972348	-	High_confidence	42	43	45	1.975937	5.070656	chr5	152972189	152972544	LTR|ERVL-MaLR|THE1A	-	chr5	152618964	152972349	LINC01470|NR_109877.1	-	152618964,152684660,152820244,152966240,152972265	152620782,152684785,152820300,152966334,152972349	0.622222
HT1080_cytosolic_fraction	chr13	45206566	45206634	45206633	+	High_confidence	395	675	1022	44.875714	5.700917	chr13	45206646	45206717	SINE|MIR|MIRb	+	chr13	45206354	45267333	GTF2F2|ENST00000494087.5	+	45206354,45252870,45267232	45207505,45252970,45267333	0.810176
HT1080_cytosolic_fraction	chr17	57524146	57524158	57524149	+	RAMPAGE_only	5	5	13	0.570826	3.700440	chr17	57524001	57524343	LTR|ERVL-MaLR|MLT1H	-	chr17	57440689	57675059	MSI2|ENST00000579505.5	+	57440689,57529675,57596867,57615969,57627228,57652098,57674917	57440739,57529724,57596950,57616084,57627303,57652161,57675059	0.615385
HT1080_cytosolic_fraction	chr12	104280753	104280847	104280753	-	High_confidence	5	6	39	1.712478	4.701944	chr12	104280524	104280952	LTR|ERVL|MLT2D	+	chr12	104262313	104280722	AC089983.1|ENST00000549807.1	-	104262313,104280283	104262575,104280722	0.846154
HT1080_cytosolic_fraction	chr14	55796687	55796688	55796687	-	High_confidence	1279	1404	1583	69.509056	6.501951	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796688	LINC00520|ENST00000649892.1	-	55781136,55793367,55796602	55782581,55793456,55796688	0.856601
HT1080_cytosolic_fraction	chr1	33021389	33021425	33021424	-	RAMPAGE_only	4	4	12	0.526916	2.918296	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.916667
HT1080_cytosolic_fraction	chr19	48994931	48994932	48994931	+	RAMPAGE_only	8	9	9	0.395187	2.500000	chr19	48994647	48994932	SINE|Alu|AluSz	+	chr19	48993909	49009882	RUVBL2|ENST00000593570.5	+	48993909,48999318,49001348,49003278,49004276,49007017,49007301,49009775	48993923,48999373,49001590,49003334,49004418,49007147,49007368,49009882	0.777778
HT1080_cytosolic_fraction	chr17	1115398	1115412	1115408	-	High_confidence	4	4	12	0.526916	2.913977	chr17	1115307	1115433	LINE|L2|L2b	+	chr17	1072732	1115436	ABR|ENST00000570441.5	-	1072732,1073624,1079329,1083519,1091664,1100636,1115275	1072754,1073677,1079390,1083627,1091850,1100735,1115436	0.750000
HT1080_cytosolic_fraction	chrX	43176996	43176998	43176997	+	High_confidence	195	255	315	13.831556	6.808792	chrX	43176750	43177173	LTR|ERV1|MER61C	+	chrX	43176956	43210395	MSTRG.26207.1	+	43176956,43196199,43196652,43197315,43210228	43177205,43196369,43196780,43197375,43210395	0.768254
HT1080_cytosolic_fraction	chr7	108029929	108029955	108029929	-	RAMPAGE_only	7	7	20	0.878194	3.203702	chr7	108029837	108030136	SINE|Alu|AluSc5	+	chr7	108023810	108037462	LAMB4|ENST00000483484.5	-	108023810,108029042,108034207,108037387	108024178,108029196,108034346,108037462	0.900000
HT1080_cytosolic_fraction	chr5	33441342	33441375	33441368	+	High_confidence	4	4	20	0.878194	3.932138	chr5	33441307	33441471	SINE|MIR|MIR3	-	chr5	33441380	33448730	TARS|ENST00000506040.1	+	33441380,33445323,33448540	33441864,33445404,33448730	0.900000
HT1080_cytosolic_fraction	chr3	64462331	64462372	64462331	-	High_confidence	18	18	55	2.415034	5.340184	chr3	64462250	64462410	LINE|CR1|L3	-	chr3	64453515	64462364	MSTRG.18189.1	-	64453515,64459289,64462267	64454765,64459404,64462364	0.981818
HT1080_cytosolic_fraction	chr19	15828958	15829061	15828958	+	High_confidence	12	14	53	2.327214	5.038688	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15828957	15835415	UCA1|ENST00000642256.1	+	15828957,15831207,15834501	15829338,15831356,15835415	0.924528
HT1080_cytosolic_fraction	chr3	18516080	18516083	18516082	+	RAMPAGE_only	12	19	27	1.185562	3.902175	chr3	18516080	18520244	LINE|L1|L1HS	+	chr3	18526386	18591793	SATB1-AS1|ENST00000629477.2	+	18526386,18527173,18529980,18585619,18586869,18591634	18526540,18527326,18530185,18585762,18586908,18591793	0.740741
HT1080_cytosolic_fraction	chr20	46770457	46770475	46770468	-	High_confidence	11	12	62	2.722401	5.067278	chr20	46770332	46770677	LTR|ERVL-MaLR|THE1B	-	chr20	46765306	46770457	MSTRG.16357.1	-	46765306,46768005,46769264,46770415	46765824,46768072,46769557,46770457	0.903226
HT1080_cytosolic_fraction	chrY	7434401	7434421	7434420	+	High_confidence	182	187	587	25.774994	5.917085	chrY	7433952	7434581	LTR|ERV1|MER41B	+	chrY	7434400	7522479	MSTRG.26832.1	+	7434400,7501008,7518939,7520079	7434577,7501167,7519048,7522479	0.947189
HT1080_cytosolic_fraction	chr18	14970235	14970267	14970235	-	High_confidence	18	18	59	2.590672	5.551969	chr18	14970079	14970190	DNA|hAT-Charlie|MER5A1	-	chr18	14969605	14970468	LINC01444|ENST00000580867.1	-	14969605,14969877	14969778,14970468	0.779661
HT1080_cytosolic_fraction	chr7	107580475	107580499	107580498	+	High_confidence	5	5	11	0.483007	3.277613	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.909091
HT1080_cytosolic_fraction	chr7	72412340	72412341	72412340	-	High_confidence	130	137	163	7.157281	6.419928	chr7	72412058	72412621	LTR|ERV1|LTR12_	-	chr7	71779490	72412373	CALN1|ENST00000395275.6	-	71779490,71810335,72023656,72106150,72278685,72403250,72412057	71787902,71810492,72023769,72106294,72278810,72403442,72412373	0.723926
HT1080_cytosolic_fraction	chr21	33968445	33968481	33968463	-	High_confidence	29	29	96	4.215331	5.690439	chr21	33968191	33968612	LTR|ERVL-MaLR|MLT1J	-	chr21	33967100	33968573	AP000569.1|ENST00000607953.1	-	33967100,33968232	33967350,33968573	0.927083
HT1080_cytosolic_fraction	chr3	29280832	29280895	29280832	-	High_confidence	5	5	33	1.449020	4.597276	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.606061
HT1080_cytosolic_fraction	chr17	59619888	59619923	59619894	+	High_confidence	198	254	1045	45.885637	5.743966	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.949282
HT1080_cytosolic_fraction	chr18	46087038	46087053	46087042	-	High_confidence	3	4	9	0.395187	2.750000	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.777778
HT1080_cytosolic_fraction	chr2	105329640	105329671	105329670	-	High_confidence	7	8	14	0.614736	3.521641	chr2	105329666	105329774	LTR|ERV1|LTR2752	-	chr2	105264389	105329714	TGFBRAP1|NM_001142621.2	-	105264389,105269271,105272854,105273543,105275559,105277613,105280381,105284315,105296355,105298510,105307613,105329624	105267559,105269705,105273014,105273690,105275703,105277671,105280723,105284398,105296510,105298705,105308315,105329714	1.000000
HT1080_cytosolic_fraction	chr4	188109602	188109603	188109602	-	High_confidence	8	8	8	0.351278	2.750000	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188091272	188109602	MSTRG.20134.1	-	188091272,188097060,188097323,188099034,188101055,188104836,188105179,188109242	188091941,188097161,188097346,188099175,188101250,188104932,188105587,188109602	1.000000
HT1080_cytosolic_fraction	chr7	94022801	94022802	94022801	+	RAMPAGE_only	38	42	49	2.151575	5.178509	chr7	94022613	94022990	LTR|ERVL-MaLR|THE1C	+	chr7	94061140	94066661	AC003092.1|ENST00000438538.1	+	94061140,94061455,94061768,94064425,94066366	94061270,94061625,94061864,94064477,94066661	0.530612
HT1080_cytosolic_fraction	chr17	2975621	2975667	2975660	+	High_confidence	22	39	140	6.147358	6.113370	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975617	3008090	MSTRG.10667.6	+	2975617,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010	2975775,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008090	0.864286
HT1080_cytosolic_fraction	chr14	19289869	19289875	19289874	-	RAMPAGE_only	208	223	347	15.236666	6.356712	chr14	19289707	19290351	DNA|TcMar-Tigger|MER44C	+	chr14	19244903	19269380	AL589743.7|ENST00000649331.1	-	19244903,19245664,19263182,19269148	19244980,19245863,19263321,19269380	0.706052
HT1080_cytosolic_fraction	chr6	26474333	26474346	26474345	+	High_confidence	22	22	83	3.644505	5.211044	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26474268	26476624	MSTRG.21655.8	+	26474268,26476160	26474396,26476624	0.831325
HT1080_cytosolic_fraction	chr1	239408186	239408187	239408186	+	RAMPAGE_only	16	19	24	1.053833	3.849224	chr1	239407991	239408310	LTR|ERVL-MaLR|THE1C	+	chr1	239386564	239886596	CHRM3|ENST00000468573.5	+	239386564,239492708,239545640,239632223,239678185,239718795,239826852,239827251,239886088	239387227,239492807,239545749,239632286,239678288,239718899,239827081,239827378,239886596	0.541667
HT1080_cytosolic_fraction	chr5	172958875	172958919	172958918	+	High_confidence	98	112	416	18.266435	5.534278	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.949519
HT1080_cytosolic_fraction	chr7	116327901	116327914	116327911	-	RAMPAGE_only	12	13	23	1.009923	4.297079	chr7	116327809	116328061	SINE|MIR|MIRb	-	chr7	116275605	116286727	LOC102724434|NR_130922.1	-	116275605,116284367,116286111,116286698	116277432,116284406,116286195,116286727	0.739130
HT1080_cytosolic_fraction	chr1	158146895	158146896	158146895	-	High_confidence	45	52	55	2.415034	4.315072	chr1	158146568	158147206	LTR|ERVL|MER70B	-	chr1	158132039	158146929	LINC01704|ENST00000635685.1	-	158132039,158146766	158132656,158146929	0.927273
HT1080_cytosolic_fraction	chr12	94983791	94983828	94983791	-	RAMPAGE_only	4	4	18	0.790375	3.292770	chr12	94983699	94983861	LINE|L2|L2	+	chr12	94971332	94994353	NDUFA12|ENST00000538372.6	-	94971332,94994169	94971620,94994353	0.500000
HT1080_cytosolic_fraction	chr5	77510229	77510232	77510231	-	RAMPAGE_only	11	19	19	0.834284	3.826875	chr5	77510058	77510424	LTR|ERVL-MaLR|THE1B	-	chr5	77430932	77492596	WDR41|ENST00000296679.8	-	77430932,77436260,77437335,77438239,77440812,77449759,77451290,77453816,77459061,77463094,77464760,77489456,77492169	77433287,77436394,77437424,77438361,77440997,77449870,77451353,77453928,77459124,77463226,77464809,77489572,77492596	1.000000
HT1080_cytosolic_fraction	chr2	78542027	78542039	78542038	-	High_confidence	20	20	33	1.449020	4.779094	chr2	78541256	78543178	LINE|L1|L1PBa1	+	chr2	78409433	78541877	MSTRG.14731.3	-	78409433,78485793,78541571	78413176,78485852,78541877	0.575758
HT1080_cytosolic_fraction	chr5	140534351	140534352	140534351	+	RAMPAGE_only	10	10	14	0.614736	3.392747	chr5	140534110	140534410	SINE|Alu|AluY	+	chr5	140537048	140538262	ANKHD1|ENST00000495578.1	+	140537048,140538085	140537589,140538262	0.714286
HT1080_cytosolic_fraction	chr1	152870041	152870075	152870059	+	RAMPAGE_only	16	16	41	1.800298	4.241446	chr1	152870069	152870228	SINE|MIR|MIRc	+	chr1	152878316	152885047	SMCP|ENST00000368765.3	+	152878316,152884402	152878446,152885047	0.951220
HT1080_cytosolic_fraction	chrX	98573814	98573850	98573849	+	High_confidence	7	8	33	1.449020	4.839701	chrX	98573437	98574092	LTR|ERV1|LTR49	+	chrX	98573858	98865564	AL157778.1|ENST00000626665.3	+	98573858,98578985,98644527,98731530,98785026,98864610	98573932,98579074,98644574,98731577,98785124,98865564	0.636364
HT1080_cytosolic_fraction	chr7	100102108	100102109	100102108	+	High_confidence	6	6	6	0.263458	2.584963	chr7	100102098	100102390	SINE|Alu|AluSx1	+	chr7	100102085	100103296	AP4M1|ENST00000495154.1	+	100102085,100102674,100102863,100103227	100102393,100102781,100102960,100103296	0.833333
HT1080_cytosolic_fraction	chr2	87445727	87445762	87445727	-	RAMPAGE_only	15	16	35	1.536840	3.265875	chr2	87445471	87446012	LINE|L2|L2a	+	chr2	87439522	87459044	LINC01943|ENST00000625410.1	-	87439522,87458856	87439893,87459044	1.000000
HT1080_cytosolic_fraction	chr5	154287420	154287470	154287469	+	High_confidence	7	11	26	1.141652	3.854286	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	1.000000
HT1080_cytosolic_fraction	chr1	40067240	40067256	40067255	+	High_confidence	46	48	179	7.859836	5.201474	chr1	40067175	40067278	LINE|L2|L2	-	chr1	40067269	40071581	CAP1|ENST00000479759.5	+	40067269,40067539,40069689,40070158,40070429,40070835,40071449	40067311,40067717,40069874,40070282,40070512,40070979,40071581	0.983240
HT1080_cytosolic_fraction	chr15	80059915	80059933	80059918	+	High_confidence	219	253	829	36.401142	5.439165	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.967431
HT1080_cytosolic_fraction	chr1	167937022	167937060	167937059	-	High_confidence	3	3	11	0.483007	2.732159	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167916674	167937069	MPC2|NM_001143674.3	-	167916674,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937069	1.000000
HT1080_cytosolic_fraction	chr9	125650437	125650464	125650443	-	High_confidence	4	4	14	0.614736	3.546594	chr9	125649959	125650542	LINE|L2|L2b	+	chr9	125444500	125650417	MAPKAP1|ENST00000420643.5	-	125444500,125467971,125484442,125543058,125559632,125585554,125599834,125650363	125444598,125468109,125484583,125543168,125559809,125585727,125599927,125650417	0.928571
HT1080_cytosolic_fraction	chrX	45615747	45615750	45615747	+	High_confidence	109	116	178	7.815927	5.639663	chrX	45615415	45616062	LTR|ERV1|LTR12	+	chrX	45615688	45642737	MSTRG.26219.7	+	45615688,45629458,45630072,45632077	45618172,45629634,45630205,45642737	0.966292
HT1080_cytosolic_fraction	chr14	63101972	63101994	63101972	-	High_confidence	4	4	20	0.878194	3.984184	chr14	63101880	63102189	SINE|Alu|AluY	+	chr14	62949817	63102037	KCNH5|ENST00000394964.3	-	62949817,62980871,62987071,63001330,63006365,63016830,63101799	62950559,62981264,62987187,63001459,63006472,63016954,63102037	0.600000
HT1080_cytosolic_fraction	chr4_GL000008v2_random	170331	170368	170347	-	RAMPAGE_only	347	370	1620	71.133715	6.764277	chr4_GL000008v2_random	170280	170685	LTR|ERV1|MER61C	+	chr4_GL000008v2_random	161986	178171	ANKRD20A12P|NR_046228.1	-	161986,163784,164602,175824,177526	162439,163998,164884,175974,178171	0.883333
HT1080_cytosolic_fraction	chr18	80148048	80148049	80148048	+	High_confidence	10	10	15	0.658646	3.506891	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.933333
HT1080_cytosolic_fraction	chr7	53468315	53468316	53468315	+	High_confidence	1366	1367	1487	65.293725	8.000925	chr7	53468126	53468487	LTR|ERVL-MaLR|THE1B	+	chr7	53468313	53513626	MSTRG.23150.1	+	53468313,53468622,53512965	53468404,53468771,53513626	0.602555
HT1080_cytosolic_fraction	chr2	139410956	139410957	139410956	+	High_confidence	83	92	115	5.049616	5.115499	chr2	139410158	139411367	LTR|ERV1|LTR12C	+	chr2	139410964	139411568	MSTRG.15152.1	+	139410964	139411568	0.973913
HT1080_cytosolic_fraction	chr1	238486008	238486043	238486035	-	High_confidence	9	23	82	3.600595	5.429054	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.865854
HT1080_cytosolic_fraction	chr1	23404014	23404026	23404025	-	RAMPAGE_only	4	4	9	0.395187	2.725481	chr1	23403928	23404035	LINE|RTE-BovB|MamRTE1	+	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.555556
HT1080_cytosolic_fraction	chr1	53047207	53047225	53047223	+	RAMPAGE_only	13	25	36	1.580749	4.461320	chr1	53046851	53047387	LTR|ERVL-MaLR|MLT1E1A	-	chr1	53014973	53051610	SCP2|ENST00000488965.1	+	53014973,53027968,53047857	53015043,53028071,53051610	1.000000
HT1080_cytosolic_fraction	chr6	117464063	117464066	117464063	+	RAMPAGE_only	22	23	39	1.712478	4.471354	chr6	117464010	117464173	LINE|L1|L1MD1	-	chr6	117453833	117485042	DCBLD1|ENST00000533950.1	+	117453833,117480345,117480861,117484949	117453897,117480470,117480999,117485042	0.923077
HT1080_cytosolic_fraction	chr14	28830242	28830264	28830244	+	High_confidence	9	15	26	1.141652	4.238901	chr14	28830132	28830430	SINE|Alu|AluY	-	chr14	28830243	28842337	LINC02327|ENST00000550827.5	+	28830243,28832005,28837252,28841952	28830502,28832060,28837330,28842337	0.500000
HT1080_cytosolic_fraction	chr3	12840635	12840636	12840635	-	High_confidence	6	6	8	0.351278	2.807355	chr3	12840594	12840703	SINE|MIR|MIRc	+	chr3	12834944	12840450	RPL32|NM_001007074.1	-	12834944,12839348,12840141	12836223,12839530,12840450	0.875000
HT1080_cytosolic_fraction	chr22	11897394	11897407	11897394	+	High_confidence	22	23	59	2.590672	4.405587	chr22	11897053	11897465	LTR|ERV1|MER61C	-	chr22	11897360	11916040	MSTRG.16895.1	+	11897360,11902860,11905336,11911024,11913039	11897467,11903142,11905557,11911144,11916040	0.813559
HT1080_cytosolic_fraction	chr11	126648123	126648130	126648123	+	High_confidence	11	15	36	1.580749	4.503258	chr11	126647942	126648306	LTR|ERVL-MaLR|MSTA	+	chr11	126648109	126682103	MSTRG.5104.1	+	126648109,126652780,126681782	126648229,126652929,126682103	0.583333
HT1080_cytosolic_fraction	chr2	200887948	200888000	200887966	-	High_confidence	12	12	41	1.800298	4.735362	chr2	200887775	200888074	SINE|Alu|AluSx1	+	chr2	200871151	200887687	PPIL3|ENST00000415562.5	-	200871151,200876918,200881420,200882341,200885697,200887612	200871521,200877037,200881488,200882382,200885772,200887687	0.804878
HT1080_cytosolic_fraction	chr14	102240606	102240615	102240614	-	High_confidence	70	125	237	10.406599	6.053714	chr14	102240323	102240748	LTR|ERV1|HERVH-int	+	chr14	102228838	102240611	MOK|ENST00000524370.5	-	102228838,102229456,102232534,102233687,102240451	102229366,102229657,102232708,102233789,102240611	0.860759
HT1080_cytosolic_fraction	chr17	44209889	44209890	44209889	-	RAMPAGE_only	5	5	7	0.307368	2.584963	chr17	44209869	44210073	SINE|MIR|MIRc	-	chr17	44207239	44218502	UBTF|ENST00000529383.5	-	44207239,44207453,44207698,44207863,44209351,44209644,44210123,44210317,44210791,44211038,44211289,44211605,44211872,44212343,44212818,44213217,44215653,44215905,44216528,44218171	44207367,44207597,44207770,44207911,44209541,44209733,44210234,44210473,44210947,44211152,44211331,44211747,44212006,44212454,44212939,44213282,44215809,44215989,44216704,44218502	0.857143
HT1080_cytosolic_fraction	chr1	246417412	246417413	246417412	-	High_confidence	123	124	148	6.498636	5.409067	chr1	246417275	246418033	LTR|ERV1|LTR8B	-	chr1	245749339	246417412	SMYD3|NM_022743.2	-	245749339,245764040,245858495,245863798,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246417295	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246417412	0.804054
HT1080_cytosolic_fraction	chrX	103627079	103627092	103627089	+	High_confidence	18	18	38	1.668569	4.879506	chrX	103626903	103627134	SINE|MIR|MIR	-	chrX	103627081	103630447	MSTRG.26517.6	+	103627081,103628405,103629493,103629884	103627154,103628793,103629561,103630447	0.973684
HT1080_cytosolic_fraction	chr5	83096150	83096177	83096152	+	High_confidence	56	81	137	6.015629	5.722471	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83096157	83311069	MSTRG.20689.7	+	83096157,83104909,83111027,83195769,83203551,83204814,83258529,83310788	83096263,83105058,83111203,83195936,83203707,83204921,83258677,83311069	1.000000
HT1080_cytosolic_fraction	chr19	5680196	5680261	5680240	-	High_confidence	52	52	316	13.875465	6.182529	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.996835
HT1080_cytosolic_fraction	chrX	20026418	20026430	20026429	-	High_confidence	3	3	11	0.483007	3.121928	chrX	20026328	20026400	LINE|L1|L1MB3	-	chrX	20021347	20025943	MAP7D2|ENST00000466145.1	-	20021347,20024950,20025680	20021549,20025083,20025943	0.909091
HT1080_cytosolic_fraction	chr15	82546441	82546442	82546441	-	RAMPAGE_only	10	10	11	0.483007	3.321928	chr15	82546117	82546394	SINE|Alu|AluSx1	-	chr15	82536749	82540564	RPS17|ENST00000330244.11	-	82536749,82538305,82538879,82539980,82540425	82536881,82538371,82538985,82540132,82540564	0.909091
HT1080_cytosolic_fraction	chrX	135713612	135713655	135713635	+	High_confidence	31	31	203	8.913669	2.766840	chrX	135713526	135713749	LTR|ERVL|LTR41	+	chrX	135713452	135723246	CT45A1|NM_001017417.2	+	135713452,135718934,135721027,135721657,135722975	135713690,135719109,135721276,135721751,135723246	0.995074
HT1080_cytosolic_fraction	chr6	28354199	28354206	28354205	-	High_confidence	7	7	12	0.526916	3.277613	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.666667
HT1080_cytosolic_fraction	chr15	33098271	33098332	33098331	-	RAMPAGE_only	5	5	28	1.229472	4.106377	chr15	33098285	33098680	LINE|L1|HAL1	+	chr15	32765543	33068032	FMN1|NM_001103184.3	-	32765543,32776834,32798803,32804280,32857014,32888171,32898833,32899978,32901910,32908489,32910473,32926173,32964106,32968713,33008013,33064956,33066510	32774354,32776919,32798953,32804332,32857107,32888292,32898893,32900125,32902040,32908578,32910535,32926261,32964257,32969477,33008075,33065074,33068032	0.964286
HT1080_cytosolic_fraction	chr18	73264469	73264502	73264501	-	High_confidence	31	32	98	4.303151	5.769873	chr18	73264307	73264608	SINE|Alu|AluY	+	chr18	73154057	73264498	LOC400655|NR_034133.1	-	73154057,73159540,73161823,73200652,73255812,73264239	73155935,73159664,73161973,73200789,73255918,73264498	0.795918
HT1080_cytosolic_fraction	chr2	200888597	200888629	200888628	-	High_confidence	14	15	34	1.492930	4.300554	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.794118
HT1080_cytosolic_fraction	chr2	55618848	55618853	55618850	-	High_confidence	6	8	14	0.614736	3.546594	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.928571
HT1080_cytosolic_fraction	chr4	188109512	188109542	188109522	-	High_confidence	4	4	14	0.614736	3.546594	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188091372	188109587	MSTRG.20134.4	-	188091372,188097060,188097323,188099034,188101055,188104836,188105179,188109242	188091941,188097161,188097346,188099175,188101250,188104932,188105590,188109587	0.928571
HT1080_cytosolic_fraction	chr6	147660702	147660705	147660704	+	High_confidence	179	273	308	13.524188	6.535738	chr6	147660510	147660901	LTR|ERVL-MaLR|MSTA	+	chr6	147660736	147737556	AL033504.1|ENST00000432506.5	+	147660736,147733728,147737316	147660819,147733811,147737556	0.516234
HT1080_cytosolic_fraction	chr15	34588538	34588588	34588564	+	High_confidence	30	35	117	5.137435	5.857867	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34588537	34645405	MSTRG.8372.1	+	34588537,34626279,34640837,34645162	34588649,34626366,34640958,34645405	0.820513
HT1080_cytosolic_fraction	chr21	18760301	18760313	18760301	-	High_confidence	11	11	19	0.834284	3.836592	chr21	18759779	18760548	LTR|ERV1|LTR17	-	chr21	18561264	18760003	MIR548XHG|ENST00000437492.5	-	18561264,18589526,18737923,18759773	18561691,18589620,18738025,18760003	0.631579
HT1080_cytosolic_fraction	chr7	29970358	29970365	29970358	-	High_confidence	7	7	12	0.526916	3.277613	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	0.666667
HT1080_cytosolic_fraction	chr1	20604503	20604519	20604503	+	RAMPAGE_only	4	4	15	0.658646	3.006239	chr1	20604191	20604547	LTR|ERVL-MaLR|MLT1A0	-	chr1	20589085	20618903	CDA|ENST00000461985.1	+	20589085,20604927,20618451	20589283,20605039,20618903	0.866667
HT1080_cytosolic_fraction	chr1	244740388	244740389	244740388	+	High_confidence	61	62	63	2.766311	4.915719	chr1	244740420	244740730	SINE|Alu|AluSp	+	chr1	244740403	244750003	MSTRG.2597.1	+	244740403,244749641	244740739,244750003	0.936508
HT1080_cytosolic_fraction	chr18	1407187	1407231	1407215	-	High_confidence	27	28	105	4.610519	5.752401	chr18	1407047	1407340	SINE|Alu|AluY	+	chr18	1268310	1407180	LINC00470|ENST00000412816.7	-	1268310,1272441,1275965,1368484,1406986	1269852,1272511,1276077,1368597,1407180	0.504762
HT1080_cytosolic_fraction	chr14	102240690	102240719	102240690	-	High_confidence	5	5	15	0.658646	3.640224	chr14	102240323	102240748	LTR|ERV1|HERVH-int	+	chr14	102228820	102240621	MOK|NR_073542.1	-	102228820,102229456,102232534,102233687,102240451	102229366,102229657,102232708,102233789,102240621	1.000000
HT1080_cytosolic_fraction	chr2	174547365	174547384	174547381	+	High_confidence	59	59	129	5.664351	6.357669	chr2	174547163	174547404	LTR|ERV1|LTR78	+	chr2	174547373	174665689	AC010894.3|ENST00000412835.1	+	174547373,174655497,174665176	174547477,174656285,174665689	0.596899
HT1080_cytosolic_fraction	chr18	48621506	48621539	48621508	+	RAMPAGE_only	23	33	121	5.313074	5.743814	chr18	48621468	48621857	LINE|L2|L2a	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	0.619835
HT1080_cytosolic_fraction	chr6	66259008	66259061	66259052	+	High_confidence	87	111	283	12.426445	5.872342	chr6	66258644	66259182	LTR|ERV1|LTR10F	+	chr6	66259008	66277086	MSTRG.22111.2	+	66259008,66266707,66271658,66274572	66259411,66266773,66271771,66277086	0.939929
HT1080_cytosolic_fraction	chr11	3380960	3380961	3380960	+	High_confidence	8	8	8	0.351278	2.500000	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.750000
HT1080_cytosolic_fraction	chr1	115669647	115669648	115669647	+	High_confidence	12	12	12	0.526916	3.188722	chr1	115669428	115669791	LTR|ERVL-MaLR|THE1B	+	chr1	115669592	115698221	MSTRG.1477.5	+	115669592,115682363,115683943,115685292,115691118	115669707,115682497,115684076,115685527,115698221	0.916667
HT1080_cytosolic_fraction	chr2	238439784	238439788	238439787	+	RAMPAGE_only	3	3	8	0.351278	2.750000	chr2	238439667	238439928	LINE|L1|L1MC4	-	chr2	238435168	238446397	ASB1|ENST00000468122.1	+	238435168,238444341,238446383	238435261,238444727,238446397	0.500000
HT1080_cytosolic_fraction	chrX	135893604	135893715	135893604	+	High_confidence	11	11	59	2.590672	5.221295	chrX	135893573	135893804	LTR|ERVL|LTR41	-	chrX	135893617	135913053	MSTRG.26664.5	+	135893617,135896242,135901558,135904476,135905251,135906023,135906410,135906925,135907312,135907700,135908088,135908476,135908863,135909638,135910029,135910414,135911191,135911578,135912320,135912797	135893843,135896329,135901691,135904602,135905392,135906164,135906551,135907066,135907453,135907841,135908229,135908617,135909004,135909779,135910170,135910555,135911332,135911953,135912414,135913053	0.983051
HT1080_cytosolic_fraction	chr12	113773650	113773686	113773650	-	High_confidence	968	1129	2078	91.244357	7.593458	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113745703	113773663	LINC01234|ENST00000550223.5	-	113745703,113767074,113773614	113746595,113767208,113773663	0.503369
HT1080_cytosolic_fraction	chr7	48000229	48000270	48000251	-	High_confidence	3	3	13	0.570826	3.022055	chr7	48000133	48000438	SINE|Alu|AluSx	-	chr7	47987147	48000181	SUN3|ENST00000473723.5	-	47987147,47988787,47991009,47994314,47996030,48000127	47987449,47988880,47991045,47994482,47996146,48000181	0.769231
HT1080_cytosolic_fraction	chr19	12681159	12681191	12681159	-	High_confidence	3	3	12	0.526916	3.095795	chr19	12680833	12681131	SINE|Alu|AluSx3	-	chr19	12679624	12681161	DHPS|ENST00000599481.1	-	12679624,12679800,12680195,12681032	12679719,12679922,12680325,12681161	0.833333
HT1080_cytosolic_fraction	chr1	235589047	235589070	235589058	-	High_confidence	29	29	161	7.069462	6.154419	chr1	235589032	235589593	LTR|ERVL|LTR18B	+	chr1	235550831	235589074	MSTRG.2542.3	-	235550831,235583739,235588996	235552237,235583848,235589074	0.527950
HT1080_cytosolic_fraction	chr10	47743694	47743698	47743694	+	High_confidence	3	4	8	0.351278	2.807355	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.500000
HT1080_cytosolic_fraction	chr1	45522822	45522859	45522858	-	High_confidence	11	11	28	1.229472	4.593069	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	1.000000
HT1080_cytosolic_fraction	chr22	39021135	39021156	39021146	+	High_confidence	7	8	24	1.053833	3.969002	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.958333
HT1080_cytosolic_fraction	chr20	18794077	18794086	18794077	+	High_confidence	15	15	38	1.668569	4.520000	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.947368
HT1080_cytosolic_fraction	chr1	232969177	232969187	232969177	+	RAMPAGE_only	6	6	10	0.439097	2.725481	chr1	232968951	232969295	LTR|ERVL-MaLR|MLT1F1	-	chr1	232961902	232978651	NTPCR|ENST00000490098.1	+	232961902,232978162	232970118,232978651	0.900000
HT1080_cytosolic_fraction	chr9	5580716	5580737	5580718	-	High_confidence	3	5	9	0.395187	2.725481	chr9	5580521	5580905	LTR|ERVL-MaLR|MSTA	-	chr9	5577314	5580693	MSTRG.25020.1	-	5577314,5580603	5577511,5580693	1.000000
HT1080_cytosolic_fraction	chr17	78632016	78632064	78632016	-	High_confidence	21	21	109	4.786157	5.848257	chr17	78632006	78632221	DNA|hAT-Charlie|MER1A	+	chr17	78617376	78632011	LINC02081|ENST00000590023.6	-	78617376,78621666,78624191,78630031,78631989	78617626,78621733,78624315,78630430,78632011	0.816514
HT1080_cytosolic_fraction	chr2	174118195	174118202	174118195	-	RAMPAGE_only	5	5	9	0.395187	2.750000	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075189	174079351	OLA1|ENST00000497760.1	-	174075189,174078967	174075527,174079351	0.666667
HT1080_cytosolic_fraction	chr1	42959041	42959100	42959077	+	High_confidence	29	30	96	4.215331	4.642291	chr1	42959103	42959181	SINE|MIR|MIR3	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.958333
HT1080_cytosolic_fraction	chr3	46422747	46422764	46422747	-	High_confidence	4	4	12	0.526916	3.277613	chr3	46421787	46423556	LTR|ERVL|HERVL18-int	-	chr3	46416523	46423591	LINC02009|ENST00000635852.1	-	46416523,46419516,46421372,46422684,46423544	46419046,46419663,46421492,46422798,46423591	0.750000
HT1080_cytosolic_fraction	chr1	12501891	12501918	12501893	+	RAMPAGE_only	7	12	23	1.009923	3.754442	chr1	12501629	12502031	LINE|L2|L2c	-	chr1	12464939	12512047	VPS13D|ENST00000543766.2	+	12464939,12497499,12506852,12508892	12465249,12497631,12507093,12512047	0.869565
HT1080_cytosolic_fraction	chr15	82093996	82094039	82094031	+	High_confidence	68	69	402	17.651700	6.165006	chr15	82093781	82094459	DNA|TcMar-Tigger|Tigger7	+	chr15	82093977	82101510	MSTRG.9053.4	+	82093977,82095481,82099404	82094234,82098979,82101510	0.920398
HT1080_cytosolic_fraction	chr2	3822951	3822954	3822953	+	RAMPAGE_only	6	11	11	0.483007	3.095795	chr2	3822772	3823124	LTR|ERVL-MaLR|THE1B	+	chr2	3844183	3847411	DCDC2C|ENST00000451101.1	+	3844183,3847153	3844642,3847411	0.818182
HT1080_cytosolic_fraction	chr21	9634236	9634269	9634268	+	RAMPAGE_only	67	71	261	11.460432	5.794991	chr21	9634256	9634610	LINE|L1|L1MA7	-	chr21	9662188	9679905	LOC105379514|NR_135513.1	+	9662188,9677371,9678229,9679514	9662338,9677569,9678353,9679905	0.735632
HT1080_cytosolic_fraction	chr14	102238255	102238299	102238255	-	High_confidence	5	5	15	0.658646	3.521641	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102229438	102238098	MOK|ENST00000519477.5	-	102229438,102231706,102232534,102233687,102235364,102238021	102229657,102231821,102232671,102233809,102235401,102238098	0.800000
HT1080_cytosolic_fraction	chr16	11587465	11587475	11587468	-	High_confidence	7	9	22	0.966013	3.459432	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
HT1080_cytosolic_fraction	chr1	67791706	67791754	67791731	-	RAMPAGE_only	31	31	83	3.644505	4.949399	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701465	67833436	MSTRG.1108.1	-	67701465,67707593,67777457,67831818,67833343	67705576,67707712,67777507,67831970,67833436	0.927711
HT1080_cytosolic_fraction	chr1	153967484	153967512	153967511	+	High_confidence	10	10	49	2.151575	4.535096	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153974131	MSTRG.1773.1	+	153967533,153968521,153968929,153969333,153972743,153972971,153973194,153973379,153973619,153973871	153967884,153968699,153969176,153969455,153972836,153973078,153973263,153973464,153973716,153974131	0.775510
HT1080_cytosolic_fraction	chr16	1963518	1963519	1963518	-	High_confidence	4	4	7	0.307368	2.584963	chr16	1963335	1963598	SINE|Alu|AluSx3	+	chr16	1962060	1963256	RPS2|ENST00000526586.6	-	1962060,1962735,1963148	1962656,1962909,1963256	0.857143
HT1080_cytosolic_fraction	chr4	37001803	37001812	37001805	+	High_confidence	188	211	311	13.655917	6.594327	chr4	37001705	37002035	LTR|ERV1|MER48	+	chr4	37001815	37020708	AL136537.2|ENST00000562049.1	+	37001815,37018317	37001895,37020708	0.877814
HT1080_cytosolic_fraction	chr8	94467937	94467959	94467937	-	RAMPAGE_only	2	2	8	0.351278	2.807355	chr8	94467637	94468397	LTR|ERV1|LTR39	+	chr8	94431159	94475062	RAD54B|ENST00000297592.5	-	94431159,94458267,94467404,94475000	94432656,94458436,94467555,94475062	0.625000
HT1080_cytosolic_fraction	chr17	59892716	59892736	59892716	-	High_confidence	11	12	32	1.405110	4.309035	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.812500
HT1080_cytosolic_fraction	chr6	158026127	158026150	158026149	+	RAMPAGE_only	6	8	17	0.746465	3.202820	chr6	158026039	158026177	SINE|MIR|MIRc	+	chr6	157982037	158030937	SYNJ2|ENST00000367113.5	+	157982037,158017203,158028755,158030407	157982088,158017290,158029026,158030937	0.941176
HT1080_cytosolic_fraction	chr8	142700106	142700143	142700106	+	High_confidence	28	39	95	4.171422	5.297004	chr8	142699823	142700158	LTR|ERV1|LTR43	-	chr8	142700110	142704170	LY6K|NM_001160355.1	+	142700110,142701599,142703122	142700630,142701713,142704170	0.978947
HT1080_cytosolic_fraction	chr7	43694081	43694140	43694139	-	High_confidence	50	50	410	18.002977	5.878606	chr7	43693084	43695551	LINE|L2|L2a	+	chr7	43638798	43694161	MSTRG.23104.8	-	43638798,43640572,43645250,43647534,43648599,43650611,43665657,43693853	43639681,43640649,43645399,43647634,43648652,43650712,43665722,43694161	0.929268
HT1080_cytosolic_fraction	chr14	71141972	71141986	71141985	-	RAMPAGE_only	20	21	66	2.898040	5.174377	chr14	71141860	71141986	SINE|MIR|MIR	-	chr14	71141124	71143253	AC004817.3|ENST00000602957.1	-	71141124	71143253	0.924242
HT1080_cytosolic_fraction	chr14	23584314	23584315	23584314	-	High_confidence	12475	12535	12588	552.735309	5.746240	chr14	23583899	23585447	LTR|ERV1|LTR12C	-	chr14	23582833	23584309	MSTRG.7309.1	-	23582833	23584309	0.991023
HT1080_cytosolic_fraction	chr8	32927967	32927984	32927976	+	High_confidence	607	648	1414	62.088316	6.968635	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927924	33050043	MSTRG.24218.3	+	32927924,33041634,33044366	32928093,33041743,33050043	0.979491
HT1080_cytosolic_fraction	chr1	6208681	6208682	6208681	-	High_confidence	72	72	74	3.249318	3.463096	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.945946
HT1080_cytosolic_fraction	chr17	40482735	40482780	40482760	-	High_confidence	2	3	11	0.483007	3.121928	chr17	40482630	40482794	SINE|Alu|AluSz	+	chr17	40475732	40482814	MSTRG.11392.1	-	40475732,40478306,40478579,40479673,40480699,40482128,40482323,40482700	40477729,40478333,40478648,40479842,40480768,40482206,40482416,40482814	0.909091
HT1080_cytosolic_fraction	chr7	99935217	99935242	99935241	-	RAMPAGE_only	5	5	14	0.614736	3.238901	chr7	99935071	99935422	LTR|ERVL-MaLR|THE1B	-	chr7	99923268	99929620	GJC3|ENST00000312891.2	-	99923268,99928839	99923603,99929620	0.928571
HT1080_cytosolic_fraction	chrX	4633589	4633590	4633589	-	High_confidence	23	23	23	1.009923	3.464235	chrX	4633431	4633785	LTR|ERVL-MaLR|THE1A	-	chrX	4627199	4633572	LOC101928201|NR_110390.1	-	4627199,4630221,4633507	4628189,4630350,4633572	0.782609
HT1080_cytosolic_fraction	chr15	34588450	34588453	34588452	-	RAMPAGE_only	11	23	28	1.229472	4.235926	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34379067	34437466	GOLGA8A|NR_027409.1	-	34379067,34381700,34381967,34382150,34382385,34382796,34383440,34383745,34383960,34385047,34385253,34385426,34385739,34386624,34389643,34391122,34398633,34399154,34400711,34404916,34406673,34407523,34435382,34437397	34381613,34381856,34382068,34382251,34382529,34383053,34383528,34383853,34384047,34385157,34385338,34385474,34385778,34387952,34389768,34391426,34398729,34399203,34400759,34405055,34406870,34407735,34435471,34437466	0.750000
HT1080_cytosolic_fraction	chr5	34918370	34918378	34918370	+	RAMPAGE_only	6	6	12	0.526916	2.845351	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	0.833333
HT1080_cytosolic_fraction	chr12	6493553	6493570	6493553	-	High_confidence	3	3	8	0.351278	2.750000	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	1.000000
HT1080_cytosolic_fraction	chr17	47067487	47067534	47067498	-	High_confidence	260	295	1033	45.358721	6.143799	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.910939
HT1080_cytosolic_fraction	chr1	162874632	162874634	162874632	-	RAMPAGE_only	9	15	16	0.702555	3.906891	chr1	162874383	162874749	LTR|ERVL-MaLR|MLT1C	-	chr1	162854296	162873235	MSTRG.1954.3	-	162854296,162855631,162859459,162873158	162855359,162855758,162859658,162873235	0.812500
HT1080_cytosolic_fraction	chr1	196933697	196933725	196933712	-	High_confidence	33	64	228	10.011412	6.145764	chr1	196933509	196934428	LTR|ERV1|LTR12C	+	chr1	196907611	196933717	MSTRG.2185.1	-	196907611,196922894,196933456	196912683,196923011,196933717	0.767544
HT1080_cytosolic_fraction	chr4	173369515	173369534	173369526	-	High_confidence	15	15	49	2.151575	4.825553	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363779	173370446	AC097534.2|ENST00000609153.1	-	173363779,173369433,173370291	173364198,173369610,173370446	0.795918
HT1080_cytosolic_fraction	chr3	12840677	12840678	12840677	-	High_confidence	9	9	9	0.395187	2.641604	chr3	12840594	12840703	SINE|MIR|MIRc	+	chr3	12834944	12840450	RPL32|NM_001007074.1	-	12834944,12839348,12840141	12836223,12839530,12840450	1.000000
HT1080_cytosolic_fraction	chr10	122852351	122852363	122852351	-	RAMPAGE_only	81	81	135	5.927810	5.094746	chr10	122852085	122852506	LINE|L1|L1MCa	+	chr10	122832148	122850793	CUZD1|ENST00000368904.5	-	122832148,122833671,122834705,122836177,122836830,122837403,122839016,122841177,122845761,122849236,122850423	122832450,122833940,122835097,122836350,122837048,122837554,122839231,122841328,122846220,122849439,122850793	0.866667
HT1080_cytosolic_fraction	chr1	93845880	93845881	93845880	-	RAMPAGE_only	25	25	30	1.317291	4.307355	chr1	93845589	93846003	LTR|ERVL|LTR40c	+	chr1	93777802	93848123	MSTRG.1277.13	-	93777802,93845566,93846952	93784191,93845712,93848123	0.600000
HT1080_cytosolic_fraction	chr5	160199150	160199156	160199155	+	High_confidence	44	54	83	3.644505	4.610972	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.975904
HT1080_cytosolic_fraction	chr1	23394279	23394307	23394306	-	RAMPAGE_only	4	4	14	0.614736	3.180833	chr1	23394262	23394444	SINE|MIR|MIRb	+	chr1	23381060	23424740	TCEA3|ENST00000450454.6	-	23381060,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23381474,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424740	0.785714
HT1080_cytosolic_fraction	chr7	134711498	134711504	134711503	+	RAMPAGE_only	13	13	38	1.668569	4.681881	chr7	134711275	134711628	LTR|ERVL|MLT2D	+	chr7	134744251	134968402	CALD1|ENST00000417172.5	+	134744251,134843883,134867692,134928753,134932987,134941091,134947507,134950373,134958068,134958208,134959973,134960532,134965305,134968339	134744363,134843971,134867804,134928900,134933390,134941237,134947769,134950514,134958112,134958290,134960111,134960628,134965386,134968402	0.657895
HT1080_cytosolic_fraction	chr13	27194491	27194504	27194491	-	RAMPAGE_only	3	7	15	0.658646	3.039149	chr13	27194354	27194607	LTR|ERVL-MaLR|MLT1J	-	chr13	27178262	27208001	LINC02340|ENST00000610335.4	-	27178262,27186505,27190621,27207294,27207973	27178574,27186658,27190681,27207367,27208001	0.933333
HT1080_cytosolic_fraction	chr7	36661304	36661306	36661304	-	High_confidence	11	14	20	0.878194	3.826875	chr7	36661075	36661436	LTR|ERVL-MaLR|MLT1O	+	chr7	36623189	36661300	AOAH|ENST00000543742.1	-	36623189,36632035,36637850,36659165,36661042	36623250,36632106,36637910,36659265,36661300	0.800000
HT1080_cytosolic_fraction	chr14	91237352	91237376	91237370	-	RAMPAGE_only	8	11	24	1.053833	3.827910	chr14	91237228	91237346	SINE|MIR|MIR3	-	chr14	91232531	91244508	GPR68|NM_001177676.1	-	91232531,91244296	91235179,91244508	0.958333
HT1080_cytosolic_fraction	chr17	41521716	41521776	41521716	-	High_confidence	53	60	446	19.583726	6.701959	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41513745	41521719	KRT15|ENST00000393976.6	-	41513745,41514648,41515471,41515884,41516103,41516807,41517082,41518329,41519344,41521684	41514120,41514674,41515692,41516010,41516265,41516964,41517165,41519010,41519872,41521719	0.964126
HT1080_cytosolic_fraction	chr5	54310508	54310515	54310514	-	High_confidence	6	6	13	0.570826	3.026987	chr5	54310446	54310538	DNA|TcMar-Tigger|Tigger15a	+	chr5	53884783	54310573	ARL15|NM_019087.2	-	53884783,54113201,54154579,54171783,54310431	53886713,54113410,54154639,54171928,54310573	1.000000
HT1080_cytosolic_fraction	chr20	38217935	38217983	38217982	+	High_confidence	8	8	33	1.449020	4.476064	chr20	38217933	38218039	DNA|hAT-Charlie|MER5A	+	chr20	38217904	38222125	MSTRG.16273.1	+	38217904,38218165,38219007	38218063,38218838,38222125	0.848485
HT1080_cytosolic_fraction	chr1	240339116	240339120	240339116	+	High_confidence	10	10	17	0.746465	3.572469	chr1	240338677	240339204	DNA|hAT-Charlie|MER1A	-	chr1	240339026	240474709	MSTRG.2564.9	+	240339026,240355815,240392510,240438060,240472371,240474127	240339249,240355908,240392562,240438210,240472453,240474709	0.941176
HT1080_cytosolic_fraction	chr3	6490422	6490488	6490445	+	High_confidence	3	3	19	0.834284	3.826875	chr3	6484911	6490929	LINE|L1|L1PA2	-	chr3	6490802	6557959	AC069277.1|ENST00000414603.1	+	6490802,6557586	6490946,6557959	0.526316
HT1080_cytosolic_fraction	chr14	23636366	23636367	23636366	+	High_confidence	9774	10025	12231	537.059546	7.271024	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	0.940561
HT1080_cytosolic_fraction	chr1	241504042	241504060	241504042	-	RAMPAGE_only	1	1	7	0.307368	2.584963	chr1	241503964	241504054	SINE|MIR|MIRc	+	chr1	241497602	241519761	FH|ENST00000366560.3	-	241497602,241500436,241502442,241504041,241506002,241508602,241511966,241513602,241517181,241519590	241497970,241500590,241502570,241504245,241506168,241508785,241512143,241513713,241517316,241519761	0.857143
HT1080_cytosolic_fraction	chr18	47285701	47285702	47285701	+	High_confidence	1083	1111	1389	60.990574	7.810346	chr18	47285505	47285878	LTR|ERVL-MaLR|THE1D	+	chr18	47285693	47596896	MSTRG.12601.1	+	47285693,47561733,47574595,47582674,47587500,47594048	47285797,47561851,47574731,47582793,47592115,47596896	0.655148
HT1080_cytosolic_fraction	chr5	25162529	25162551	25162529	-	RAMPAGE_only	2	2	8	0.351278	2.521641	chr5	25162061	25162542	LTR|ERV1|MER4-int	-	chr5	25126304	25190656	LINC02228|ENST00000507600.1	-	25126304,25136341,25162229,25167161,25190446	25126454,25136445,25162269,25167191,25190656	0.875000
HT1080_cytosolic_fraction	chr19	35164177	35164229	35164203	+	High_confidence	6	7	66	2.898040	3.534079	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	0.969697
HT1080_cytosolic_fraction	chrX	4545976	4545977	4545976	-	High_confidence	49	49	49	2.151575	4.742161	chrX	4545870	4546320	LTR|ERV1|LTR7Y	-	chrX	3555946	4545970	MSTRG.26016.1	-	3555946,4543138	3555982,4545970	1.000000
HT1080_cytosolic_fraction	chr6	79631256	79631303	79631273	+	High_confidence	96	100	482	21.164476	5.890522	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.989627
HT1080_cytosolic_fraction	chr7	27647204	27647209	27647204	-	High_confidence	8	8	21	0.922104	3.821928	chr7	27646996	27647430	DNA|TcMar-Tigger|MER44B	-	chr7	27525474	27647264	MSTRG.22991.2	-	27525474,27531191,27538340,27542966,27629370,27632335,27647151	27526372,27531348,27538417,27543100,27629492,27632445,27647264	0.904762
HT1080_cytosolic_fraction	chr15	85320144	85320145	85320144	-	RAMPAGE_only	17	18	18	0.790375	3.852169	chr15	85320020	85320979	LINE|L1|L1MA4	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.555556
HT1080_cytosolic_fraction	chr15	80485614	80485643	80485614	+	RAMPAGE_only	4	6	21	0.922104	3.748995	chr15	80485352	80485695	LINE|L2|L2b	-	chr15	80470242	80488735	ARNT2|ENST00000531595.3	+	80470242,80475009,80487733,80488565	80470431,80475223,80487874,80488735	0.809524
HT1080_cytosolic_fraction	chr3	149284778	149284779	149284778	+	High_confidence	28	28	30	1.317291	3.695947	chr3	149283837	149285090	LTR|ERV1|LTR12C	+	chr3	149284781	149333653	AC093001.1|ENST00000489011.1	+	149284781,149333503	149285182,149333653	0.766667
HT1080_cytosolic_fraction	chr14	30160740	30160756	30160748	-	RAMPAGE_only	6	6	17	0.746465	3.125000	chr14	30160565	30160849	LTR|ERVL|LTR79	-	chr14	29663811	30191898	PRKD1|ENST00000549503.1	-	29663811,29666076,29725535,30047709,30191298,30191865	29663859,29666208,29725674,30047787,30191450,30191898	0.588235
HT1080_cytosolic_fraction	chr3	69999732	69999733	69999732	+	High_confidence	35	35	37	1.624659	4.500712	chr3	69999500	70000000	LTR|ERV1|LTR1A2	+	chr3	69999732	70014787	SAMMSON|ENST00000641286.1	+	69999732,70012356,70013519	69999867,70012598,70014787	0.540541
HT1080_cytosolic_fraction	chr2	217277959	217277980	217277979	+	RAMPAGE_only	6	6	11	0.483007	3.027169	chr2	217277834	217277987	SINE|MIR|MIR3	-	chr2	217282732	217344204	DIRC3-AS1|NR_133642.1	+	217282732,217295903,217296631,217302685,217335957,217344169	217282809,217295987,217296770,217302785,217336581,217344204	0.727273
HT1080_cytosolic_fraction	chr11	32136911	32136941	32136932	+	High_confidence	14	14	74	3.249318	4.192371	chr11	32136526	32137015	LTR|ERVL-MaLR|MLT1K	-	chr11	32136907	32143719	AL078612.2|ENST00000649877.1	+	32136907,32143143	32137242,32143719	0.945946
HT1080_cytosolic_fraction	chr15	52100532	52100544	52100543	-	High_confidence	2	3	6	0.263458	2.584963	chr15	52100279	52100861	LTR|ERVL|MER73	-	chr15	52056674	52100523	AC023906.5|ENST00000558607.1	-	52056674,52100469	52057255,52100523	1.000000
HT1080_cytosolic_fraction	chr2	9114922	9114925	9114922	+	High_confidence	19	21	33	1.449020	4.284684	chr2	9114748	9115100	LTR|ERVL-MaLR|THE1B	+	chr2	9115196	9116884	AC093904.3|ENST00000492300.1	+	9115196,9116572	9115252,9116884	0.575758
HT1080_cytosolic_fraction	chr1	162855779	162855861	162855842	-	High_confidence	16	17	108	4.742248	5.691002	chr1	162855777	162856190	LTR|ERVL-MaLR|MLT1B	+	chr1	162855088	162855946	CCDC190|ENST00000524710.1	-	162855088,162855631	162855359,162855946	0.787037
HT1080_cytosolic_fraction	chrX	29660179	29660193	29660192	+	RAMPAGE_only	24	24	42	1.844207	5.041011	chrX	29659858	29660240	LTR|ERVL-MaLR|MSTA	-	chrX	29917462	29955820	IL1RAPL1|ENST00000302196.5	+	29917462,29919948,29941650,29954521,29955101	29917596,29920094,29941794,29954692,29955820	0.642857
HT1080_cytosolic_fraction	chr5	69189844	69189870	69189844	+	High_confidence	3	4	18	0.790375	3.852169	chr5	69189833	69190009	SINE|MIR|MIRb	+	chr5	69189741	69209929	CENPH|ENST00000502689.1	+	69189741,69191794,69194646,69197052,69202505,69202918,69208195,69209706	69189768,69191850,69194695,69197109,69202569,69202970,69208359,69209929	0.555556
HT1080_cytosolic_fraction	chr15	70802730	70802731	70802730	-	High_confidence	5	5	8	0.351278	3.000000	chr15	70802588	70802715	LTR?|LTR?|MamRep605	-	chr15	70796656	70802688	RPL29P30|ENST00000496414.1	-	70796656,70797283,70797539,70802598	70797131,70797392,70797693,70802688	0.750000
HT1080_cytosolic_fraction	chr7	36322604	36322605	36322604	+	High_confidence	101	121	122	5.356983	5.116188	chr7	36322424	36322790	LTR|ERVL-MaLR|THE1B	+	chr7	36322614	36336785	MSTRG.23053.1	+	36322614,36325858,36335307	36322718,36325918,36336785	0.991803
HT1080_cytosolic_fraction	chr14	101731413	101731433	101731413	+	High_confidence	24	24	61	2.678492	5.336235	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.934426
HT1080_cytosolic_fraction	chr10	106337017	106337060	106337042	-	High_confidence	5	5	29	1.273381	4.651084	chr10	106336681	106337220	LTR|ERVL|MLT2B3	-	chr10	106094905	106337078	MSTRG.3519.2	-	106094905,106100226,106111783,106114571,106115318,106126125,106142675,106336759	106099683,106100349,106111836,106114679,106115514,106126235,106142769,106337078	0.586207
HT1080_cytosolic_fraction	chrX	152453536	152453569	152453537	-	RAMPAGE_only	16	22	39	1.712478	4.631305	chrX	152453283	152453724	LTR|ERVL-MaLR|MLT1C	-	chrX	152167161	152451359	GABRA3|NM_000808.3	-	152167161,152189729,152197632,152208000,152224762,152255777,152284667,152345580,152364430,152451145	152168563,152189941,152197785,152208144,152224845,152255998,152284735,152345702,152364596,152451359	1.000000
HT1080_cytosolic_fraction	chr7	54759877	54759885	54759884	-	High_confidence	3	3	7	0.307368	2.521641	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	1.000000
HT1080_cytosolic_fraction	chr1	155058721	155058762	155058761	+	High_confidence	6	6	21	0.922104	3.118275	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	1.000000
HT1080_cytosolic_fraction	chr6	149857261	149857262	149857261	-	High_confidence	7	7	8	0.351278	2.807355	chr6	149857249	149857531	SINE|Alu|AluJb	+	chr6	149818797	149857285	MSTRG.22641.6	-	149818797,149826263,149836084,149837337,149842982,149853002,149857140	149820703,149826359,149836297,149837463,149843124,149853160,149857285	0.750000
HT1080_cytosolic_fraction	chr2	227805751	227805769	227805768	+	RAMPAGE_only	3	3	7	0.307368	2.521641	chr2	227805690	227806180	LTR|ERV1|LTR2C	-	chr2	227813841	227817564	CCL20|NM_001130046.1	+	227813841,227815456,227816306,227817061	227813987,227815568,227816384,227817564	1.000000
HT1080_cytosolic_fraction	chr6	66259301	66259336	66259301	+	High_confidence	259	288	736	32.317539	6.215283	chr6	66259182	66259467	LTR|ERV1|HERVIP10FH-int	+	chr6	66259008	66277086	MSTRG.22111.2	+	66259008,66266707,66271658,66274572	66259411,66266773,66271771,66277086	0.978261
HT1080_cytosolic_fraction	chr3	111911611	111911613	111911612	+	High_confidence	220	457	494	21.691392	5.990915	chr3	111911655	111911757	DNA|hAT-Ac|OldhAT1	+	chr3	111911609	111976465	PHLDB2|ENST00000495180.1	+	111911609,111913318,111919071,111920281,111932268,111939474,111940534,111945267,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111911724,111913702,111919215,111920419,111932397,111939630,111940645,111945357,111954029,111962312,111966703,111967824,111969909,111973817,111976465	0.945344
HT1080_cytosolic_fraction	chr7	99274443	99274471	99274470	+	RAMPAGE_only	17	17	47	2.063756	4.985412	chr7	99274453	99274548	LINE|CR1|L3	+	chr7	99273300	99297972	MYH16|NR_002147.2	+	99273300,99277538,99279509,99280875,99283564,99283872,99284844,99285381,99287891,99289286,99291322,99292311,99294017,99296700,99297659,99297891	99273423,99277712,99279737,99280980,99283651,99284018,99284935,99285438,99288137,99289404,99291450,99292508,99294150,99296917,99297796,99297972	0.978723
HT1080_cytosolic_fraction	chr6	158720646	158720703	158720675	+	High_confidence	6	7	28	1.229472	4.458591	chr6	158720644	158720795	SINE|MIR|MIR	-	chr6	158720648	158764869	MSTRG.22714.6	+	158720648,158725502,158745479,158751927,158757210,158760639,158762075,158763303,158764494	158720856,158725637,158745658,158752030,158757381,158760745,158762178,158763509,158764869	0.928571
HT1080_cytosolic_fraction	chr9	62376797	62376819	62376800	-	High_confidence	4	4	9	0.395187	3.000000	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.777778
HT1080_cytosolic_fraction	chr12	126772444	126772483	126772480	-	High_confidence	9	9	38	1.668569	4.242577	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126729786	126772411	LINC00944|ENST00000540684.5	-	126729786,126730762,126732342,126746260,126747930,126772078	126729966,126730803,126732407,126746332,126748127,126772411	0.921053
HT1080_cytosolic_fraction	chr2	101474871	101474900	101474899	-	High_confidence	4	5	16	0.702555	3.750000	chr2	101474765	101474876	DNA|hAT-Charlie|MER5B	-	chr2	101397360	101474703	RFX8|ENST00000481179.5	-	101397360,101402435,101405942,101410618,101412914,101417533,101418850,101421699,101422361,101428955,101450593,101452384,101466776,101474635	101397724,101402752,101406057,101410713,101413071,101417684,101418964,101421777,101422472,101429019,101450680,101452446,101466900,101474703	0.937500
HT1080_cytosolic_fraction	chr3	122745547	122745581	122745575	-	RAMPAGE_only	6	7	38	1.668569	3.414572	chr3	122745410	122746106	DNA|TcMar-Tigger|MER44C	+	chr3	122740002	122741776	HSPBAP1|ENST00000471534.1	-	122740002,122741002	122740875,122741776	1.000000
HT1080_cytosolic_fraction	chr12	27716415	27716438	27716433	+	RAMPAGE_only	2	2	9	0.395187	3.000000	chr12	27716483	27716564	LINE|L2|L2	+	chr12	27710846	27755537	MRPS35|ENST00000542791.1	+	27710846,27755180	27710955,27755537	0.777778
HT1080_cytosolic_fraction	chr10	93465848	93465861	93465848	-	RAMPAGE_only	4	4	8	0.351278	2.521641	chr10	93465494	93465813	SINE|Alu|AluSx	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.625000
HT1080_cytosolic_fraction	chr8	9188273	9188274	9188273	+	High_confidence	6	6	8	0.351278	2.521641	chr8	9188163	9188460	LINE|L2|L2b	-	chr8	9188958	9203126	AC022784.1|ENST00000649571.1	+	9188958,9189347,9198923,9202498	9189046,9189586,9198991,9203126	0.875000
HT1080_cytosolic_fraction	chrX	13303406	13303409	13303406	-	High_confidence	18	23	31	1.361201	3.453250	chrX	13303238	13303604	LTR|ERVL-MaLR|THE1B	-	chrX	13266047	13303392	LINC02154|ENST00000412485.1	-	13266047,13287428,13303319	13267335,13287564,13303392	0.935484
HT1080_cytosolic_fraction	chr1	6200559	6200658	6200657	-	High_confidence	14	14	46	2.019846	2.938814	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.978261
HT1080_cytosolic_fraction	chr14	23636315	23636316	23636315	+	High_confidence	110	148	158	6.937733	5.976963	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636334	23645639	DHRS2|ENST00000250383.10	+	23636334,23638826,23639178,23639793,23643151,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645639	0.936709
HT1080_cytosolic_fraction	chr14	75025225	75025288	75025243	-	RAMPAGE_only	6	8	45	1.975937	4.639308	chr14	75025064	75026121	LINE|L2|L2c	+	chr14	75015486	75023018	MLH3|ENST00000554697.5	-	75015486,75017007,75018828,75022813,75022994	75015862,75017201,75018980,75022892,75023018	0.733333
HT1080_cytosolic_fraction	chr4	62439191	62439214	62439213	-	High_confidence	10	11	30	1.317291	4.123231	chr4	62439054	62439409	LTR|ERVL-MaLR|THE1A	-	chr4	62437555	62439320	MSTRG.19486.1	-	62437555,62439130	62438472,62439320	0.966667
HT1080_cytosolic_fraction	chrX	2964583	2964584	2964583	-	High_confidence	7	7	10	0.439097	2.641604	chrX	2964489	2964607	SINE|Alu|AluJb	-	chrX	2934631	2964453	ARSE|NM_001282628.1	-	2934631,2936741,2938094,2943064,2945997,2949303,2953142,2955415,2958273,2959602,2960377,2964223	2935190,2936863,2938257,2943199,2946134,2949727,2953265,2955537,2958435,2959888,2960420,2964453	0.800000
HT1080_cytosolic_fraction	chr15	53684376	53684397	53684376	-	High_confidence	3	3	8	0.351278	2.807355	chr15	53684199	53690229	LINE|L1|L1PA3	+	chr15	53665691	53684627	WDR72|ENST00000567575.1	-	53665691,53684145	53665768,53684627	0.500000
HT1080_cytosolic_fraction	chr6	152717583	152717585	152717584	+	RAMPAGE_only	39	51	59	2.590672	4.789312	chr6	152717403	152717757	LTR|ERVL-MaLR|THE1B	+	chr6	152697960	152724501	MYCT1|ENST00000532295.1	+	152697960,152721741,152722762	152698098,152722253,152724501	0.898305
HT1080_cytosolic_fraction	chr2	9236018	9236040	9236039	+	RAMPAGE_only	5	5	11	0.483007	3.121928	chr2	9235896	9236095	DNA|hAT-Charlie|MER20	+	chr2	9206950	9405677	MSTRG.14132.3	+	9206950,9237832,9279316,9297299,9318523,9320287,9323120,9327825,9334737,9335092,9344531,9344730,9350807,9356046,9356178,9358755,9368424,9374754,9376907,9378943,9380740,9385244,9388293,9393481,9400022,9400741,9401273,9403252	9207230,9237945,9279389,9297445,9318598,9320337,9323250,9327911,9334813,9335179,9344635,9344800,9350895,9356095,9356345,9358889,9368519,9374944,9376993,9379059,9380808,9385358,9388546,9393647,9400072,9400830,9401396,9405677	0.818182
HT1080_cytosolic_fraction	chr1	175107651	175107652	175107651	-	High_confidence	360	362	363	15.939221	5.997081	chr1	175107104	175109022	LTR|ERV1|LTR12C	-	chr1	175100714	175108092	MSTRG.2050.1	-	175100714,175107020	175103105,175108092	0.991736
HT1080_cytosolic_fraction	chr15	67119129	67119150	67119129	+	RAMPAGE_only	6	7	28	1.229472	4.180833	chr15	67118986	67119501	LINE|L2|L2c	-	chr15	67125715	67190762	SMAD3|ENST00000540846.6	+	67125715,67164894,67165252,67166778,67170553,67181240,67184726,67187364,67190412	67125984,67165088,67165384,67166853,67170604,67181453,67184864,67187509,67190762	0.928571
HT1080_cytosolic_fraction	chr17	31762436	31762437	31762436	+	High_confidence	20	20	20	0.878194	3.821928	chr17	31762038	31762862	LTR|ERV1|LTR12	+	chr17	31762439	31769048	AC007923.1|ENST00000577970.1	+	31762439,31769006	31762902,31769048	0.800000
HT1080_cytosolic_fraction	chr3	184304060	184304073	184304072	+	High_confidence	7	9	13	0.570826	3.546594	chr3	184304111	184304226	LINE|L2|L2b	+	chr3	184304061	184308534	MSTRG.18974.16	+	184304061,184305767,184306053,184306349,184306750,184307356,184307613,184308448	184304391,184305930,184306155,184306495,184306834,184307525,184308016,184308534	1.000000
HT1080_cytosolic_fraction	chr4	44016697	44016701	44016697	+	High_confidence	14	14	34	1.492930	3.424801	chr4	44016424	44016724	LTR|ERV1|MER51A	-	chr4	44016860	44020256	LINC02475|ENST00000507639.1	+	44016860,44019750	44017062,44020256	0.941176
HT1080_cytosolic_fraction	chr3	37163366	37163367	37163366	-	RAMPAGE_only	25	25	34	1.492930	4.515320	chr3	37163292	37163695	LTR|ERVL-MaLR|MLT1J2	+	chr3	37052889	37174564	LRRFIP2|ENST00000336686.8	-	37052889,37054410,37055085,37058789,37063741,37065809,37066223,37072789,37075023,37083635,37091466,37094791,37096615,37102923,37105454,37108072,37108636,37109526,37109652,37110990,37112914,37115053,37121491,37121634,37127629,37129062,37148893,37174538	37053961,37054515,37055165,37058910,37063791,37065942,37066325,37072882,37075116,37083806,37091538,37094908,37096660,37103013,37105523,37108129,37108684,37109571,37109703,37111065,37112980,37115095,37121536,37121691,37127680,37129149,37149038,37174564	0.617647
HT1080_cytosolic_fraction	chr19	9140393	9140428	9140427	+	High_confidence	23	23	112	4.917886	5.881028	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.973214
HT1080_cytosolic_fraction	chr2	9234162	9234163	9234162	+	RAMPAGE_only	21	21	25	1.097743	4.142915	chr2	9234172	9234396	SINE|MIR|MIRb	+	chr2	9206950	9405677	MSTRG.14132.3	+	9206950,9237832,9279316,9297299,9318523,9320287,9323120,9327825,9334737,9335092,9344531,9344730,9350807,9356046,9356178,9358755,9368424,9374754,9376907,9378943,9380740,9385244,9388293,9393481,9400022,9400741,9401273,9403252	9207230,9237945,9279389,9297445,9318598,9320337,9323250,9327911,9334813,9335179,9344635,9344800,9350895,9356095,9356345,9358889,9368519,9374944,9376993,9379059,9380808,9385358,9388546,9393647,9400072,9400830,9401396,9405677	0.560000
HT1080_cytosolic_fraction	chr17	41108118	41108142	41108118	+	High_confidence	2	2	8	0.351278	2.521641	chr17	41107954	41108546	LTR|ERV1|MER4-int	+	chr17	41108023	41116026	MSTRG.11402.1	+	41108023,41110003	41108379,41116026	0.875000
HT1080_cytosolic_fraction	chr20	1378181	1378212	1378181	-	High_confidence	28	28	123	5.400893	5.602915	chr20	1378076	1378229	LTR|ERVL-MaLR|MLT1L	+	chr20	1369986	1378174	FKBP1A|ENST00000474726.5	-	1369986,1372075,1375490,1377429,1378069	1370072,1372240,1375603,1377511,1378174	0.626016
HT1080_cytosolic_fraction	chr18	46087118	46087128	46087118	-	High_confidence	4	4	8	0.351278	2.521641	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.500000
HT1080_cytosolic_fraction	chr8	141002077	141002092	141002091	-	High_confidence	4	4	14	0.614736	3.085055	chr8	141002088	141002337	LINE|L2|L2	-	chr8	140879479	141002110	PTK2|ENST00000517453.5	-	140879479,140890542,140925660,141002013	140879637,140890769,140925749,141002110	0.642857
HT1080_cytosolic_fraction	chr1	93181147	93181160	93181147	-	High_confidence	4	4	13	0.570826	3.392747	chr1	93181034	93181174	SINE|Alu|FLAM_C	+	chr1	93149741	93180728	TMED5|ENST00000370282.7	-	93149741,93156299,93160128,93180053	93154888,93156483,93160226,93180728	0.615385
HT1080_cytosolic_fraction	chr2	158325467	158325513	158325512	-	RAMPAGE_only	17	18	143	6.279087	5.596435	chr2	158324837	158326485	LINE|L2|L2a	+	chr2	158171543	158380960	CCDC148|ENST00000409187.5	-	158171543,158176520,158178878,158220594,158250771,158309432,158313755,158338725,158338989,158340241,158340597,158345214,158358448,158366013,158380820	158172259,158176661,158178996,158220713,158250912,158309639,158313894,158338907,158339085,158340393,158340680,158345318,158358570,158366076,158380960	0.944056
HT1080_cytosolic_fraction	chr3	33446609	33446610	33446609	+	High_confidence	126	129	167	7.332920	5.287611	chr3	33446461	33447026	LTR|ERV1|LTR12C	+	chr3	33446587	33455596	MSTRG.17795.1	+	33446587,33453035	33447137,33455596	0.982036
HT1080_cytosolic_fraction	chr6	4126308	4126320	4126308	+	RAMPAGE_only	2	2	7	0.307368	2.521641	chr6	4126264	4126802	LINE|L2|L2b	-	chr6	4087438	4130758	C6orf201|ENST00000436110.1	+	4087438,4098999,4115406,4121948,4124959,4130141,4130484	4087726,4099198,4115663,4122046,4126119,4130361,4130758	1.000000
HT1080_cytosolic_fraction	chr6	45188002	45188017	45188007	-	RAMPAGE_only	8	8	19	0.834284	4.037401	chr6	45187853	45188573	DNA|TcMar-Tigger|MER44C	+	chr6	44829815	45003700	SUPT3H|ENST00000637763.1	-	44829815,44932652,44953309,44954494,44961752,45003652	44829857,44932763,44953417,44954607,44961828,45003700	0.684211
HT1080_cytosolic_fraction	chr6	11770342	11770363	11770362	-	High_confidence	8	8	15	0.658646	3.373557	chr6	11770197	11770333	DNA|hAT-Charlie|MER5B	-	chr6	11713953	11770986	MSTRG.21556.6	-	11713953,11723348,11735567,11766273,11768248,11770030,11770810	11714512,11723500,11735683,11766375,11768383,11770089,11770986	0.733333
HT1080_cytosolic_fraction	chr9	31578605	31578606	31578605	+	High_confidence	183	194	236	10.362689	7.061287	chr9	31578409	31578775	LTR|ERVL-MaLR|THE1B	+	chr9	31578613	31610556	MSTRG.25111.1	+	31578613,31580025,31590397,31604346	31578691,31580107,31590463,31610556	0.788136
HT1080_cytosolic_fraction	chr10	4678094	4678216	4678146	-	High_confidence	47	48	493	21.647482	6.103858	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4635528	4678154	MSTRG.2673.4	-	4635528,4644089,4648739,4656702,4657600,4659452,4678048	4635782,4644351,4651203,4656855,4657725,4659680,4678154	0.866126
HT1080_cytosolic_fraction	chr13	113907728	113907733	113907728	+	High_confidence	13	13	20	0.878194	3.684184	chr13	113907716	113907789	SINE|MIR|MIRb	+	chr13	113907679	113926254	MSTRG.7190.3	+	113907679,113915795,113916864,113919434,113920722,113921049,113922771	113908697,113916103,113916944,113919654,113920920,113921179,113926254	0.600000
HT1080_cytosolic_fraction	chr4	39319808	39319809	39319808	-	RAMPAGE_only	7	8	10	0.439097	2.947703	chr4	39319668	39319780	DNA|TcMar-Tigger|MER44B	-	chr4	39306633	39312772	RFC1|ENST00000502706.1	-	39306633,39307375,39308635,39311444,39312751	39306704,39307471,39309032,39311549,39312772	0.500000
HT1080_cytosolic_fraction	chrX	16184130	16184131	16184130	-	High_confidence	30	30	34	1.492930	3.795959	chrX	16184028	16184434	LTR|ERV1|LTR7	-	chrX	16153219	16184216	MSTRG.26070.4	-	16153219,16154597,16157752,16159652,16167206,16168680,16170615,16176064,16177478,16182348,16183880	16153463,16154680,16157859,16159695,16167342,16168893,16173524,16176118,16177554,16182537,16184216	0.735294
HT1080_cytosolic_fraction	chr19	15829094	15829095	15829094	+	High_confidence	217	223	241	10.582238	6.415955	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15835695	UCA1|ENST00000645177.1	+	15829094,15831254,15834501,15835553	15829338,15831356,15835280,15835695	0.821577
HT1080_cytosolic_fraction	chr17	13671420	13671453	13671422	-	High_confidence	6	10	31	1.361201	4.444188	chr17	13671360	13673719	LINE|L1|L1PBa	+	chr17	13658513	13671970	MSTRG.10876.1	-	13658513,13671769	13665512,13671970	0.741935
HT1080_cytosolic_fraction	chr2	27978251	27978252	27978251	+	RAMPAGE_only	7	8	10	0.439097	2.921928	chr2	27978041	27978454	LTR|ERVL-MaLR|MSTB	+	chr2	27894619	28025488	BABAM2|ENST00000604932.1	+	27894619,27929831,27987992,28025225	27894684,27929908,27988087,28025488	0.500000
HT1080_cytosolic_fraction	chr12	69778975	69778986	69778985	+	High_confidence	8	10	18	0.790375	3.807764	chr12	69773410	69779441	LINE|L1|L1HS	-	chr12	69778966	69817117	RAB3IP|ENST00000553099.5	+	69778966,69784719,69794436,69795140,69800208,69801608,69812777,69812963,69815363	69779096,69784815,69794514,69795344,69800337,69801721,69812877,69813033,69817117	0.833333
HT1080_cytosolic_fraction	chr1	49257817	49257818	49257817	-	RAMPAGE_only	9	9	11	0.483007	2.913977	chr1	49257178	49257818	LINE|L1|L1PA3	-	chr1	48817506	50023900	AGBL4|ENST00000371836.1	-	48817506,48867190,49045583,49245769,49697312,49851395,50023762	48818222,48867230,49045800,49245864,49697437,49851518,50023900	0.818182
HT1080_cytosolic_fraction	chr5	104079918	104079927	104079918	+	High_confidence	8	10	22	0.966013	4.277613	chr5	104074362	104080381	LINE|L1|L1PA2	-	chr5	104079910	104105403	LINC02163|ENST00000514769.1	+	104079910,104080907,104081879,104104173,104105359	104080124,104081041,104081947,104104287,104105403	0.727273
HT1080_cytosolic_fraction	chr14	72665552	72665659	72665658	+	High_confidence	266	428	956	41.977674	5.778539	chr14	72665446	72665910	LINE|L1|L1MC4a	+	chr14	72665530	72670906	MSTRG.7799.1	+	72665530,72670217	72665760,72670906	0.993724
HT1080_cytosolic_fraction	chr15	74490271	74490290	74490289	-	High_confidence	3	3	10	0.439097	3.169925	chr15	74490025	74490757	LINE|L2|L2a	+	chr15	74478069	74490286	AC012435.1|ENST00000563287.1	-	74478069,74490235	74481403,74490286	0.900000
HT1080_cytosolic_fraction	chr6	48111150	48111194	48111177	-	High_confidence	126	126	740	32.493178	6.617210	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47899608	48111252	MSTRG.22058.2	-	47899608,48008633,48068229,48068952,48102126,48111048	47901935,48009114,48068641,48069926,48102185,48111252	0.901351
HT1080_cytosolic_fraction	chr17	50271485	50271488	50271487	+	High_confidence	3	6	6	0.263458	2.584963	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
HT1080_cytosolic_fraction	chr4	102431237	102431258	102431237	-	High_confidence	11	12	62	2.722401	5.037908	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.935484
HT1080_cytosolic_fraction	chr3	11225963	11226026	11226025	+	High_confidence	36	39	182	7.991565	6.299114	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11225982	11263253	HRH1|NM_001098211.1	+	11225982,11259002	11226059,11263253	0.565934
HT1080_cytosolic_fraction	chr8	57746128	57746129	57746128	+	High_confidence	54	54	58	2.546763	4.407702	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.965517
HT1080_cytosolic_fraction	chr1	246219929	246219947	246219946	-	RAMPAGE_only	7	7	15	0.658646	3.807355	chr1	246219080	246220045	LTR|ERV1|LTR1D	+	chr1	245858561	246193727	SMYD3|ENST00000391836.3	-	245858561,245863798,245915529,245927930,245929869,246186742,246193674	245858670,245863886,245915640,245928033,245929937,246186942,246193727	0.733333
HT1080_cytosolic_fraction	chr22	49657483	49657519	49657515	-	High_confidence	14	22	72	3.161498	5.482366	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620455	49657542	C22orf34|NM_001289922.2	-	49620455,49624177,49624446,49624857,49626842,49656623	49620660,49624253,49624681,49624936,49627047,49657542	0.861111
HT1080_cytosolic_fraction	chr2	218582387	218582388	218582387	+	RAMPAGE_only	6	6	8	0.351278	2.807355	chr2	218582408	218582700	SINE|Alu|AluY	+	chr2	218592303	218593072	CNOT9|ENST00000473626.1	+	218592303,218592615	218592402,218593072	0.500000
HT1080_cytosolic_fraction	chr12	55716632	55716650	55716632	+	High_confidence	4	5	14	0.614736	3.235926	chr12	55716643	55716820	SINE|MIR|MIR3	+	chr12	55716530	55719703	BLOC1S1|ENST00000548556.1	+	55716530,55719090,55719498	55716717,55719223,55719703	1.000000
HT1080_cytosolic_fraction	chr6	75535422	75535423	75535422	-	RAMPAGE_only	11	11	17	0.746465	3.969816	chr6	75535259	75535603	LTR|ERVL-MaLR|THE1B	-	chr6	75295866	75493829	FILIP1|NM_001300866.1	-	75295866,75308839,75312396,75353538,75362743,75414696,75493413	75295950,75308897,75315202,75353717,75362917,75414978,75493829	0.764706
HT1080_cytosolic_fraction	chr12	55479488	55479528	55479527	-	High_confidence	8	9	45	1.975937	4.254024	chr12	55478463	55480124	Retroposon|SVA|SVA_D	-	chr12	55434733	55479472	AC122685.1|ENST00000555146.5	-	55434733,55476548,55479388	55435131,55476601,55479472	0.955556
HT1080_cytosolic_fraction	chr16	27427247	27427248	27427247	+	High_confidence	5	6	8	0.351278	3.000000	chr16	27427068	27427258	LTR|ERVL-MaLR|MLT1K	-	chr16	27427243	27450485	IL21R|ENST00000395754.4	+	27427243,27430055,27434346,27437487,27442961,27444541,27445176,27446006,27448533	27427361,27430120,27434449,27437687,27443116,27444719,27445276,27446088,27450485	1.000000
HT1080_cytosolic_fraction	chr10	91185469	91185496	91185469	+	High_confidence	9	9	54	2.371124	5.104910	chr10	91179356	91186029	LINE|L1|L1PA13	-	chr10	91185475	91284329	MSTRG.3338.2	+	91185475,91222688,91227336,91240483,91248504,91248664,91251291,91261325,91264430,91271637,91278268	91185549,91222983,91227908,91240580,91248560,91248724,91251440,91261424,91264520,91271697,91284329	0.962963
HT1080_cytosolic_fraction	chr5	27472283	27472304	27472283	+	High_confidence	132	142	416	18.266435	7.495339	chr5	27472073	27472487	LTR|ERV1|MER61C	+	chr5	27472306	27486146	MSTRG.20287.3	+	27472306,27475534,27476086,27477638,27484925	27472519,27475695,27476158,27477801,27486146	0.677885
HT1080_cytosolic_fraction	chrX	45618045	45618114	45618110	+	RAMPAGE_only	23	23	95	4.171422	5.635425	chrX	45617910	45618305	LTR|ERVL-MaLR|MSTA	+	chrX	45615688	45642737	MSTRG.26219.7	+	45615688,45629458,45630072,45632077	45618172,45629634,45630205,45642737	0.936842
HT1080_cytosolic_fraction	chr11	64226142	64226180	64226158	-	High_confidence	137	141	764	33.547011	6.975068	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.984293
HT1080_cytosolic_fraction	chr2	229586868	229586927	229586868	-	High_confidence	37	39	204	8.957579	6.642976	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229357628	229587177	MSTRG.15752.1	-	229357628,229366872,229388264,229407231,229418107,229447315,229477139,229512782,229546946,229585857,229586693	229358651,229367119,229388396,229407345,229418230,229447540,229477253,229512936,229547092,229586024,229587177	0.774510
HT1080_cytosolic_fraction	chr15	95638315	95638332	95638328	+	High_confidence	32	45	119	5.225254	5.882183	chr15	95638216	95638514	SINE|Alu|AluYm1	-	chr15	95638348	95825356	AC015574.1|ENST00000616588.4	+	95638348,95730363,95810078,95825188	95638519,95730442,95810116,95825356	0.537815
HT1080_cytosolic_fraction	chrX	138990672	138990701	138990696	-	High_confidence	4	4	18	0.790375	3.101881	chrX	138990423	138990790	LTR|ERVL-MaLR|THE1B	-	chrX	138635485	138990567	FGF13|ENST00000455663.5	-	138635485,138702983,138708817,138857511,138985017,138990507	138635655,138703087,138708928,138857679,138985091,138990567	0.944444
HT1080_cytosolic_fraction	chr18	14236643	14236647	14236646	+	RAMPAGE_only	78	86	190	8.342843	2.667795	chr18	14236320	14236738	LTR|ERV1|MER61C	-	chr18	14234760	14252848	MSTRG.12424.9	+	14234760,14243011,14244561,14250287,14251968,14252293	14234815,14243223,14244784,14250407,14252140,14252848	0.994737
HT1080_cytosolic_fraction	chr10	32982549	32982616	32982549	+	High_confidence	25	50	216	9.484495	6.273512	chr10	32982518	32982768	SINE|Alu|AluSz6	-	chr10	32982540	33082102	ITGB1-DT|ENST00000414157.1	+	32982540,32985622,33081341	32982685,32985757,33082102	0.550926
HT1080_cytosolic_fraction	chr19	57560357	57560392	57560357	-	High_confidence	3	3	11	0.483007	3.121928	chr19	57560032	57560365	LTR|ERVL|MER88	+	chr19	57541835	57559863	ZNF550|NM_001277091.1	-	57541835,57544236,57546456,57552626,57556230,57559655	57543243,57544583,57547993,57552722,57556357,57559863	0.818182
HT1080_cytosolic_fraction	chr7	99358774	99358775	99358774	+	High_confidence	12	12	12	0.526916	3.251629	chr7	99358536	99358830	SINE|Alu|AluSp	-	chr7	99358665	99366214	ARPC1A|ENST00000463009.1	+	99358665,99359544,99363542,99365890	99358775,99359738,99363633,99366214	1.000000
HT1080_cytosolic_fraction	chr11	123060156	123060256	123060174	-	High_confidence	36	36	391	17.168693	5.632694	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.677749
HT1080_cytosolic_fraction	chr19	13037396	13037412	13037408	+	High_confidence	23	44	126	5.532622	5.981709	chr19	13037335	13037620	LINE|CR1|L3b	+	chr19	13037376	13098796	MSTRG.13188.14	+	13037376,13073046,13073421,13073905,13075534,13078612,13081679,13090298,13094634	13037502,13073109,13073496,13074026,13075671,13078735,13081855,13090390,13098796	0.984127
HT1080_cytosolic_fraction	chr20	10419716	10419717	10419716	-	RAMPAGE_only	33	33	36	1.580749	4.343289	chr20	10419482	10419944	DNA|TcMar-Tigger|MER44B	-	chr20	10405183	10431922	MKKS|ENST00000399054.6	-	10405183,10407615,10408627,10412529,10420527,10431683	10405687,10407726,10408803,10413931,10420758,10431922	0.888889
HT1080_cytosolic_fraction	chrX	47658629	47658635	47658634	-	High_confidence	3	3	7	0.307368	2.521641	chrX	47658369	47658606	SINE|MIR|MIR	-	chrX	47651800	47659107	UXT|ENST00000485641.5	-	47651800,47652080,47657182,47657781,47658829	47651895,47652144,47657290,47657863,47659107	0.857143
HT1080_cytosolic_fraction	chr15	66354122	66354123	66354122	-	RAMPAGE_only	11	11	11	0.483007	3.277613	chr15	66354028	66355027	LINE|L2|L2a	+	chr15	66336383	66356685	TIPIN|ENST00000566524.5	-	66336383,66341149,66349059,66349314,66352128,66352814,66356638	66337181,66341356,66349123,66349437,66352207,66352955,66356685	1.000000
HT1080_cytosolic_fraction	chr3	108450594	108450595	108450594	-	RAMPAGE_only	7	8	8	0.351278	2.807355	chr3	108448563	108450849	LINE|L1|L1MA9	+	chr3	108404918	108459433	MYH15|ENST00000478998.5	-	108404918,108408279,108410582,108414231,108416811,108421087,108428491,108430831,108437553,108439736,108441017,108444639,108454005,108455735,108456765,108459361	108405453,108408404,108410932,108414428,108416930,108421214,108428881,108430922,108437699,108439913,108441260,108444895,108454142,108455859,108456883,108459433	0.875000
HT1080_cytosolic_fraction	chrX	147937510	147937529	147937510	+	RAMPAGE_only	3	3	8	0.351278	2.521641	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147951112	MSTRG.26693.19	+	147940580,147943130,147944904,147945533,147948682	147940662,147943326,147945051,147945616,147951112	0.875000
HT1080_cytosolic_fraction	chr15	85330237	85330278	85330277	-	RAMPAGE_only	6	9	21	0.922104	3.921928	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.619048
HT1080_cytosolic_fraction	chr1	153549132	153549134	153549133	-	High_confidence	16	21	27	1.185562	3.950064	chr1	153549066	153549188	SINE|MIR|MIRb	+	chr1	153547512	153549126	S100A3|ENST00000368712.1	-	153547512,153548344,153549027	153547846,153548490,153549126	0.666667
HT1080_cytosolic_fraction	chr7	65422089	65422126	65422100	-	High_confidence	32	37	72	3.161498	4.493519	chr7	65421656	65422978	LINE|L1|L1PA12	+	chr7	65421330	65421921	MSTRG.23173.1	-	65421330,65421869	65421617,65421921	0.958333
HT1080_cytosolic_fraction	chr17	10291819	10291831	10291822	+	High_confidence	78	96	232	10.187050	6.629762	chr17	10291623	10291998	LTR|ERVL-MaLR|THE1B	+	chr17	10291819	10341458	MSTRG.10843.1	+	10291819,10317497,10318454,10320391,10324842,10341063	10291913,10317867,10318549,10320512,10324967,10341458	0.831897
HT1080_cytosolic_fraction	chr21	18759807	18759827	18759826	-	High_confidence	67	70	134	5.883900	6.074736	chr21	18759104	18759779	LTR|ERV1|HERV17-int	-	chr21	18561264	18759812	MIR548XHG|NR_109925.1	-	18561264,18589526,18737923,18759773	18561691,18589620,18738025,18759812	0.559701
HT1080_cytosolic_fraction	chrX	115647964	115647980	115647979	+	RAMPAGE_only	2	2	7	0.307368	2.584963	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.857143
HT1080_cytosolic_fraction	chr4	119525239	119525266	119525248	-	RAMPAGE_only	10	10	47	2.063756	5.078639	chr4	119525094	119525324	LINE|L2|L2c	+	chr4	119500822	119519099	PDE5A|ENST00000503412.1	-	119500822,119502580,119504535,119505854,119507603,119511046,119519044	119501253,119502655,119504599,119505932,119507704,119511134,119519099	0.765957
HT1080_cytosolic_fraction	chr12	105332515	105332523	105332515	+	RAMPAGE_only	4	5	12	0.526916	2.732159	chr12	105332447	105332765	SINE|Alu|AluSq2	+	chr12	105330867	105370680	C12orf75|ENST00000549934.2	+	105330867,105348601,105365806,105366616,105367476,105370633	105330937,105348626,105365842,105366696,105367509,105370680	0.666667
HT1080_cytosolic_fraction	chr5	76812170	76812229	76812170	+	High_confidence	7	7	46	2.019846	4.996069	chr5	76811568	76813693	Retroposon|SVA|SVA_D	+	chr5	76811597	76835315	MSTRG.20622.4	+	76811597,76832689	76812387,76835315	0.565217
HT1080_cytosolic_fraction	chr8	9188188	9188226	9188210	+	High_confidence	10	17	75	3.293228	5.478623	chr8	9188163	9188460	LINE|L2|L2b	-	chr8	9188958	9203126	AC022784.1|ENST00000649571.1	+	9188958,9189347,9198923,9202498	9189046,9189586,9198991,9203126	0.906667
HT1080_cytosolic_fraction	chr5	75512945	75512946	75512945	+	High_confidence	9	9	10	0.439097	2.947703	chr5	75512845	75513016	SINE|Alu|AluSx1	+	chr5	75512068	75573837	POLK|ENST00000514296.5	+	75512068,75534827,75547009,75552471,75569339,75573737	75512946,75534964,75547157,75552591,75569492,75573837	0.800000
HT1080_cytosolic_fraction	chr5	32571154	32571173	32571172	+	RAMPAGE_only	6	6	14	0.614736	3.039149	chr5	32571161	32571263	LTR|ERVL-MaLR|MLT1J1	-	chr5	32585498	32604079	SUB1|ENST00000265073.8	+	32585498,32588511,32591562,32598960,32601004	32585625,32588584,32591685,32599069,32604079	1.000000
HT1080_cytosolic_fraction	chr15	89588158	89588168	89588167	+	RAMPAGE_only	8	9	18	0.790375	3.641604	chr15	89586398	89589443	LINE|L2|L2a	-	chr15	89575586	89628012	TICRR|ENST00000560985.5	+	89575586,89582685,89584288,89585707,89592046,89594414,89595392,89599323,89600584,89601297,89601488,89601736,89602795,89606767,89608802,89616404,89618151,89619707,89621392,89623622,89625935,89626955	89576240,89582965,89584527,89585942,89592176,89594554,89595611,89599475,89600685,89601391,89601568,89601976,89602892,89606825,89608949,89616495,89618210,89619842,89621550,89625786,89626061,89628012	0.722222
HT1080_cytosolic_fraction	chr1	148305163	148305173	148305163	-	RAMPAGE_only	9	9	23	1.009923	3.916127	chr1	148305024	148305382	LINE|L1|L1MEc	-	chr1	148290889	148297271	LINC01138|ENST00000434245.3	-	148290889,148292913,148295749,148296123,148296272,148297128	148291301,148293048,148295913,148296182,148296499,148297271	0.913043
HT1080_cytosolic_fraction	chr6	28354137	28354144	28354143	-	High_confidence	3	4	7	0.307368	2.584963	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324736	28354195	ZSCAN31|ENST00000396838.6	-	28324736,28327382,28329302,28336789,28337755,28341745,28353861,28354130	28326854,28327533,28329714,28336943,28337893,28341792,28353952,28354195	0.857143
HT1080_cytosolic_fraction	chr12	122064308	122064376	122064375	+	RAMPAGE_only	124	126	541	23.755148	6.901402	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063348	122068558	MSTRG.6479.2	+	122063348,122064138,122064549,122068027,122068288	122063531,122064433,122064682,122068191,122068558	0.879852
HT1080_cytosolic_fraction	chr15	20680570	20680576	20680570	-	RAMPAGE_only	7	11	21	0.922104	3.368042	chr15	20680529	20680580	DNA|TcMar-Tigger|MER44B	-	chr15	20657637	20688408	NBEAP1|ENST00000554452.5	-	20657637,20661959,20662142,20662934,20669467,20671112,20681109,20688214	20657743,20662057,20662205,20663014,20669637,20671268,20681221,20688408	0.857143
HT1080_cytosolic_fraction	chr11	46171916	46171921	46171916	+	High_confidence	7	7	18	0.790375	3.503258	chr11	46171722	46172107	LTR|ERVL-MaLR|THE1C	+	chr11	46171946	46177105	AC024475.4|ENST00000533793.1	+	46171946,46174584,46176348	46172024,46174690,46177105	1.000000
HT1080_cytosolic_fraction	chr17	27078618	27078679	27078618	-	RAMPAGE_only	4	5	17	0.746465	3.375000	chr17	27078017	27078627	LINE|L2|L2	+	chr17	27072387	27089241	LOC105371703|NR_135673.1	-	27072387,27076606,27078591,27089093	27072827,27076643,27078732,27089241	0.823529
HT1080_cytosolic_fraction	chr4	55754859	55754890	55754859	-	RAMPAGE_only	10	10	33	1.449020	4.317121	chr4	55754611	55754914	SINE|Alu|AluSx3	+	chr4	55595228	55636698	NMU|NR_120489.1	-	55595228,55599141,55600521,55605274,55607436,55609119,55616337,55630401,55636543	55595411,55599181,55600575,55605349,55607466,55609179,55616385,55630460,55636698	0.575758
HT1080_cytosolic_fraction	chr3	194486608	194486632	194486631	-	High_confidence	5	6	18	0.790375	3.807764	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.888889
HT1080_cytosolic_fraction	chr12	57229233	57229234	57229233	+	High_confidence	4	6	6	0.263458	2.584963	chr12	57229177	57229349	SINE|MIR|MIRc	-	chr12	57229326	57234931	SHMT2|ENST00000328923.7	+	57229326,57230802,57231480,57231712,57232210,57232452,57232703,57233179,57233562,57233748,57234002,57234233	57229811,57231000,57231560,57231913,57232292,57232575,57232843,57233345,57233662,57233904,57234110,57234931	1.000000
HT1080_cytosolic_fraction	chr22	29550836	29550845	29550836	-	RAMPAGE_only	4	4	9	0.395187	2.503258	chr22	29550799	29551148	DNA|hAT-Charlie|MER113	+	chr22	29508330	29549157	THOC5|ENST00000358079.8	-	29508330,29511105,29512020,29517028,29517262,29519005,29520007,29520997,29525837,29528077,29528425,29528936,29531830,29536623,29539329,29542858,29543414,29544459,29549051	29508520,29511296,29512136,29517116,29517366,29519120,29520104,29521099,29525946,29528177,29528466,29529239,29531963,29536738,29539476,29542956,29543542,29544603,29549157	1.000000
HT1080_cytosolic_fraction	chr3	157533600	157533641	157533600	-	High_confidence	2135	2220	3595	157.855373	7.011864	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157460214	157533606	VEPH1|ENST00000487753.5	-	157460214,157470313,157495211,157533512	157460355,157470529,157495506,157533606	0.942420
HT1080_cytosolic_fraction	chr2	101474811	101474821	101474820	+	RAMPAGE_only	6	6	11	0.483007	2.921928	chr2	101474765	101474876	DNA|hAT-Charlie|MER5B	-	chr2	101479389	101486822	LINC01870|ENST00000427042.1	+	101479389,101485418,101486733	101479493,101485615,101486822	0.545455
HT1080_cytosolic_fraction	chr1	151195091	151195130	151195091	-	RAMPAGE_only	7	8	23	1.009923	4.142915	chr1	151194900	151195210	SINE|Alu|AluSc8	+	chr1	151176299	151190213	VPS72|NM_001271087.1	-	151176299,151178000,151184316,151185505,151185797,151190004	151177064,151178145,151184493,151185620,151185950,151190213	0.608696
HT1080_cytosolic_fraction	chr1	3976096	3976107	3976096	+	High_confidence	4	5	8	0.351278	2.750000	chr1	3975944	3976307	LTR|ERVL-MaLR|THE1D	+	chr1	3976132	4012699	AL805961.1|ENST00000642026.1	+	3976132,3976881,4012230	3976195,3977102,4012699	0.500000
HT1080_cytosolic_fraction	chr6	140898419	140898430	140898421	-	High_confidence	42	85	221	9.704044	6.710619	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140898451	MSTRG.22555.2	-	140845957,140852818,140898187	140846304,140852924,140898451	0.506787
HT1080_cytosolic_fraction	chr4	31997378	31997379	31997378	+	High_confidence	350	363	391	17.168693	3.597860	chr4	31996206	31997789	LTR|ERV1|LTR12C	+	chr4	31997378	32155406	LOC102723828|NR_125936.1	+	31997378,32146052,32155313	31997822,32146267,32155406	0.976982
HT1080_cytosolic_fraction	chr2	154486410	154486411	154486410	+	RAMPAGE_only	7	7	8	0.351278	2.521641	chr2	154486216	154486580	LTR|ERVL-MaLR|THE1B	+	chr2	154698298	154858351	KCNJ3|ENST00000295101.2	+	154698298,154709602,154854726	154699477,154709819,154858351	0.625000
HT1080_cytosolic_fraction	chr11	72111411	72111433	72111432	-	High_confidence	8	8	21	0.922104	3.616349	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.714286
HT1080_cytosolic_fraction	chr6	133952656	133952672	133952656	+	High_confidence	4	4	9	0.395187	2.750000	chr6	133952660	133952828	DNA|hAT-Charlie|Charlie2a	+	chr6	133952169	133987500	TBPL1|NM_001253676.1	+	133952169,133980081,133982567,133982816,133984375,133984576,133986960	133952730,133980260,133982650,133982880,133984479,133984671,133987500	0.888889
HT1080_cytosolic_fraction	chr19	54042491	54042500	54042497	-	RAMPAGE_only	7	7	17	0.746465	2.952820	chr19	54042452	54042659	SINE|MIR|MIR	+	chr19	54040824	54058423	VSTM1|ENST00000419106.5	-	54040824,54041778,54041915,54042168,54051409,54058305	54041080,54041816,54041953,54042196,54051448,54058423	0.764706
HT1080_cytosolic_fraction	chr8	3183046	3183085	3183084	-	High_confidence	26	26	130	5.708261	4.953594	chr8	3182937	3183057	SINE|Alu|AluY	-	chr8	3096901	3183146	MSTRG.23991.9	-	3096901,3106527,3107717,3108602,3110157,3118398,3142464,3151396,3157896,3162158,3181109,3182990	3097037,3106641,3107798,3108748,3110335,3118587,3142674,3151513,3157966,3162277,3181214,3183146	0.900000
HT1080_cytosolic_fraction	chr10	123162619	123162650	123162638	+	RAMPAGE_only	2	2	10	0.439097	2.641604	chr10	123162608	123162659	DNA|hAT-Ac|OldhAT1	-	chr10	123154414	123165365	BUB3|ENST00000368858.9	+	123154414,123154917,123155657,123157728,123160406,123162235,123162611,123165046	123154485,123155112,123155727,123157880,123160565,123162413,123162828,123165365	0.900000
HT1080_cytosolic_fraction	chr1	209692411	209692412	209692411	+	RAMPAGE_only	12	12	12	0.526916	2.688722	chr1	209692271	209692747	LTR|ERV1|MER31A	-	chr1	209686268	209734478	HSD11B1|ENST00000261465.5	+	209686268,209704894,209705810,209706708,209706942,209732435,209734303	209686285,209705030,209705941,209706820,209707128,209732579,209734478	1.000000
HT1080_cytosolic_fraction	chr12	31119078	31119102	31119086	-	High_confidence	11	14	70	3.073679	4.427409	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	1.000000
HT1080_cytosolic_fraction	chr2	230230337	230230338	230230337	+	High_confidence	4	4	7	0.307368	2.584963	chr2	230230011	230230712	LTR|ERV1|LTR8	-	chr2	230230410	230239067	SP140|ENST00000544128.5	+	230230410,230234937,230237082,230238212,230238760	230230528,230235075,230237260,230238381,230239067	0.571429
HT1080_cytosolic_fraction	chr3	165918808	165918835	165918813	+	RAMPAGE_only	36	37	156	6.849913	5.903845	chr3	165917730	165919011	LTR|ERV1|LTR12C	-	chr3	166135938	166253610	MSTRG.18830.1	+	166135938,166190517,166192184,166251337	166136034,166190642,166192297,166253610	0.621795
HT1080_cytosolic_fraction	chr2	84563065	84563066	84563065	+	RAMPAGE_only	14	14	14	0.614736	3.378783	chr2	84562873	84563235	LTR|ERVL-MaLR|THE1B	+	chr2	84517822	84584791	DNAH6|ENST00000494025.1	+	84517822,84548287,84549888,84552917,84557734,84573466,84577256,84579526,84583998	84518051,84548417,84550057,84553034,84557935,84573587,84577408,84579679,84584791	0.928571
HT1080_cytosolic_fraction	chr10	28008188	28008210	28008191	-	High_confidence	9	9	49	2.151575	4.738521	chr10	28007550	28008421	LTR|ERV1|LTR78	-	chr10	27812167	28008212	MSTRG.2839.2	-	27812167,27860624,27862433,27907662,27935009,27936725,27939896,27940562,27944221,27944815,27961567,27968922,27971107,27981465,27983842,27984183,27985018,27987385,27994918,28006832,28007955	27812625,27860846,27862622,27907777,27935252,27936880,27940007,27940805,27944431,27944962,27961715,27969018,27971313,27981582,27983979,27984290,27985211,27987543,27995180,28007023,28008212	0.938776
HT1080_cytosolic_fraction	chr14	74614956	74614957	74614956	-	RAMPAGE_only	4	5	7	0.307368	2.584963	chr14	74614923	74615241	LTR|ERV1|LTR78B	-	chr14	74506705	74616612	MSTRG.7854.6	-	74506705,74507178,74507972,74508603,74508829,74509237,74509733,74510090,74511244,74516821,74521910,74522789,74525123,74526074,74527346,74528482,74528957,74532425,74535925,74549862,74551063,74552186,74552891,74555502,74585853,74603634,74614712,74615317,74616572	74506823,74507310,74508095,74508729,74508952,74509363,74509859,74510213,74511364,74516941,74522039,74522918,74525225,74526114,74527366,74528698,74529122,74532548,74536000,74549965,74551350,74552393,74553062,74555693,74586118,74603705,74614869,74615334,74616612	0.714286
HT1080_cytosolic_fraction	chr19	55172885	55172886	55172885	+	High_confidence	7	7	10	0.439097	3.169925	chr19	55172843	55172926	SINE|MIR|MIRc	-	chr19	55172786	55177719	MSTRG.13989.2	+	55172786,55177083	55172918,55177719	0.900000
HT1080_cytosolic_fraction	chr5	150640300	150640348	150640347	+	High_confidence	13	14	44	1.932027	4.815459	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640275	150659214	MSTRG.21200.4	+	150640275,150647943,150656403	150640425,150650303,150659214	0.954545
HT1080_cytosolic_fraction	chr6	40807582	40807655	40807654	+	High_confidence	45	47	186	8.167204	5.932439	chr6	40807450	40807985	LTR|ERVL|MLT2A2	+	chr6	40807590	40811762	MSTRG.21947.2	+	40807590,40808726,40809799	40807899,40809653,40811762	0.919355
HT1080_cytosolic_fraction	chr5	153585	153593	153585	+	RAMPAGE_only	3	4	9	0.395187	2.503258	chr5	153070	153636	LINE|L1|L1MEf	-	chr5	140565	157110	PLEKHG4B|ENST00000502646.1	+	140565,143046,143379,144826,151512,154874,155344,156070,156772	140716,143256,143503,144920,151599,154991,155443,156210,157110	0.888889
HT1080_cytosolic_fraction	chr4	140267762	140267886	140267762	+	High_confidence	308	361	2002	87.907220	5.563756	chr4	140267433	140267902	LTR|ERVL|LTR33A_	+	chr4	140267002	140269668	MSTRG.19875.2	+	140267002,140267772,140269385	140267177,140267981,140269668	0.990509
HT1080_cytosolic_fraction	chr19	3062924	3062983	3062982	-	High_confidence	9	10	45	1.975937	4.297694	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.911111
HT1080_cytosolic_fraction	chr10	78977917	78977972	78977971	-	High_confidence	13	17	61	2.678492	4.802394	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78977958	MSTRG.3227.1	-	78943327,78945911,78961253,78961898,78962630,78962823,78977858	78944747,78945989,78961407,78962049,78962706,78962886,78977958	0.852459
HT1080_cytosolic_fraction	chr3	101518636	101518664	101518642	+	High_confidence	15	19	72	3.161498	4.542879	chr3	101518577	101518728	LINE|L2|L2	-	chr3	101518866	101523887	FAM172BP|NR_036433.2	+	101518866,101521881	101519155,101523887	0.972222
HT1080_cytosolic_fraction	chr12	104030726	104030754	104030726	+	High_confidence	106	110	153	6.718184	5.868419	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.973856
HT1080_cytosolic_fraction	chr12	49738923	49738951	49738950	+	High_confidence	12	15	31	1.361201	4.281728	chr12	49735987	49739725	LTR|ERV1|Harlequin-int	+	chr12	49738992	49758483	TMBIM6|ENST00000546796.5	+	49738992,49752463,49752972,49755634,49758226,49758382	49739082,49752549,49753081,49755755,49758275,49758483	0.741935
HT1080_cytosolic_fraction	chr11	72170657	72170660	72170659	+	RAMPAGE_only	10	17	17	0.746465	3.219528	chr11	72170470	72170829	LTR|ERVL-MaLR|THE1B	+	chr11	72172454	72177954	AP000812.2|ENST00000538934.1	+	72172454,72176763,72177483,72177722	72172614,72176956,72177616,72177954	1.000000
HT1080_cytosolic_fraction	chr10	65570509	65570536	65570521	+	High_confidence	45	69	201	8.825850	6.190725	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.666667
HT1080_cytosolic_fraction	chr1	228103441	228103489	228103470	+	High_confidence	14	15	56	2.458943	4.847097	chr1	228103518	228103807	SINE|Alu|AluSz	+	chr1	228103378	228104970	MSTRG.2477.1	+	228103378	228104970	1.000000
HT1080_cytosolic_fraction	chr5	179269465	179269466	179269465	-	RAMPAGE_only	10	12	14	0.614736	3.807355	chr5	179269301	179269658	LTR|ERVL-MaLR|THE1B	-	chr5	179110850	179345430	ADAMTS2|NM_014244.4	-	179110850,179121660,179122643,179124972,179125997,179127958,179129931,179132229,179132776,179135908,179137768,179139889,179152141,179153490,179154048,179154813,179158722,179181071,179207512,179272910,179343766,179345189	179114324,179121750,179122773,179125180,179126130,179128118,179130098,179132310,179132900,179136042,179137944,179140035,179152255,179153623,179154192,179154919,179158879,179181155,179207715,179273064,179344161,179345430	0.571429
HT1080_cytosolic_fraction	chr22	18149868	18149883	18149868	+	High_confidence	22	22	37	1.624659	3.638830	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.972973
HT1080_cytosolic_fraction	chr2	196260402	196260447	196260439	+	High_confidence	6	6	39	1.712478	4.303784	chr2	196260400	196260528	LINE|L2|L2b	-	chr2	196260432	196263629	AC020571.1|ENST00000605907.1	+	196260432,196263050	196260536,196263629	0.820513
HT1080_cytosolic_fraction	chr11	46237357	46237389	46237388	+	High_confidence	7	7	13	0.570826	3.334679	chr11	46237227	46237435	LINE|L2|L2b	-	chr11	46238381	46239267	AC116021.1|ENST00000530049.1	+	46238381,46238738	46238505,46239267	0.615385
HT1080_cytosolic_fraction	chr14	49789498	49789535	49789498	-	RAMPAGE_only	4	5	11	0.483007	3.277613	chr14	49789398	49789451	LINE|L2|L2a	-	chr14	49784904	49787174	NEMF|ENST00000554275.1	-	49784904,49786717	49785320,49787174	0.818182
HT1080_cytosolic_fraction	chr10	110447435	110447511	110447469	-	High_confidence	195	202	799	35.083851	5.115009	chr10	110447463	110447820	LINE|L2|L2a	+	chr10	110428837	110447240	MSTRG.3537.1	-	110428837,110435123,110442210,110447094	110429010,110435207,110442374,110447240	0.976220
HT1080_cytosolic_fraction	chr21	18759971	18760043	18760042	-	High_confidence	10	10	32	1.405110	4.502583	chr21	18759779	18760548	LTR|ERV1|LTR17	-	chr21	18561264	18760003	MIR548XHG|ENST00000437492.5	-	18561264,18589526,18737923,18759773	18561691,18589620,18738025,18760003	0.718750
HT1080_cytosolic_fraction	chr5	147382865	147382887	147382883	+	High_confidence	11	11	25	1.097743	4.001629	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.720000
HT1080_cytosolic_fraction	chr3	126197910	126197922	126197910	-	RAMPAGE_only	72	74	118	5.181345	5.871429	chr3	126197802	126198236	LTR|ERV1|MER57A1	-	chr3	126135075	126180529	ALDH1L1|ENST00000473607.5	-	126135075,126136763,126137812,126146834,126150405,126153443,126154553,126155401,126157342,126158404,126159382,126160852,126180475	126135662,126136883,126137960,126146926,126150531,126153581,126154643,126155503,126157508,126158639,126159566,126161002,126180529	0.644068
HT1080_cytosolic_fraction	chr22	37354033	37354065	37354046	-	High_confidence	21	28	74	3.249318	4.668641	chr22	37353490	37354398	LINE|L1|L1ME3A	+	chr22	37352189	37354839	LOC100506271|NR_110515.1	-	37352189,37353125	37352440,37354839	0.959459
HT1080_cytosolic_fraction	chr5	32403141	32403205	32403141	-	RAMPAGE_only	2	3	16	0.702555	3.577820	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
HT1080_cytosolic_fraction	chr4	81154213	81154222	81154221	-	High_confidence	7	7	14	0.614736	3.026987	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.928571
HT1080_cytosolic_fraction	chr7	99410056	99410162	99410056	+	High_confidence	4	4	46	2.019846	4.880525	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99409084	99418121	MSTRG.23427.5	+	99409084,99410036,99411063,99416137,99417428	99409245,99410169,99411186,99416260,99418121	0.717391
HT1080_cytosolic_fraction	chr17	4143199	4143244	4143199	+	High_confidence	150	151	418	18.354255	6.164467	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.990431
HT1080_cytosolic_fraction	chr18	77993722	77993727	77993726	-	High_confidence	746	764	1191	52.296453	7.897033	chr18	77993549	77993903	LTR|ERVL-MaLR|THE1B	-	chr18	77971293	77993722	MSTRG.12772.1	-	77971293,77979494,77982519,77989818,77990092,77993634	77976675,77979629,77986997,77989914,77990174,77993722	0.803526
HT1080_cytosolic_fraction	chr8	142699972	142699997	142699972	+	High_confidence	30	32	117	5.137435	5.966378	chr8	142699823	142700158	LTR|ERV1|LTR43	-	chr8	142700110	142704170	LY6K|NM_001160354.1	+	142700110,142701599,142702843	142700630,142701713,142704170	0.931624
HT1080_cytosolic_fraction	chr6	149857186	149857203	149857202	-	High_confidence	6	6	19	0.834284	3.641604	chr6	149857081	149857249	LTR|ERV1|LTR8	+	chr6	149818797	149857285	MSTRG.22641.6	-	149818797,149826263,149836084,149837337,149842982,149853002,149857140	149820703,149826359,149836297,149837463,149843124,149853160,149857285	0.789474
HT1080_cytosolic_fraction	chr7	21851161	21851190	21851174	+	High_confidence	10	11	68	2.985860	4.925086	chr7	21851065	21851438	LTR|ERVL-MaLR|THE1C	+	chr7	21851161	21902099	MSTRG.22945.10	+	21851161,21852466,21854314,21861852,21864534,21866469,21867858,21868863,21873273,21880701,21884290,21892424,21894622,21894883,21899335,21899979,21901006	21851320,21852631,21854455,21862023,21864657,21866663,21868007,21868991,21873501,21880893,21884410,21892667,21894805,21894999,21899448,21900120,21902099	0.970588
HT1080_cytosolic_fraction	chr10	6737372	6737433	6737414	+	High_confidence	27	28	122	5.356983	5.163471	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.991803
HT1080_cytosolic_fraction	chr3	108450557	108450558	108450557	-	RAMPAGE_only	6	6	6	0.263458	2.584963	chr3	108448563	108450849	LINE|L1|L1MA9	+	chr3	108404918	108459433	MYH15|ENST00000478998.5	-	108404918,108408279,108410582,108414231,108416811,108421087,108428491,108430831,108437553,108439736,108441017,108444639,108454005,108455735,108456765,108459361	108405453,108408404,108410932,108414428,108416930,108421214,108428881,108430922,108437699,108439913,108441260,108444895,108454142,108455859,108456883,108459433	1.000000
HT1080_cytosolic_fraction	chr6	149855553	149855565	149855555	+	High_confidence	9	16	35	1.536840	4.261725	chr6	149855094	149855610	LTR|ERV1|PABL_B	+	chr6	149855534	149861204	MSTRG.22643.1	+	149855534,149861090	149855942,149861204	0.800000
HT1080_cytosolic_fraction	chr12	64439255	64439315	64439303	+	RAMPAGE_only	3	3	15	0.658646	2.606239	chr12	64439324	64439679	DNA|hAT-Charlie|Charlie4a	+	chr12	64404372	64448684	XPOT|NM_007235.4	+	64404372,64409961,64414906,64416697,64418045,64418875,64420069,64420352,64421234,64423004,64423181,64424598,64425037,64425337,64425814,64428050,64430048,64431537,64433413,64434506,64434793,64435626,64439243,64445074,64448104	64404804,64410095,64414989,64416754,64418115,64419094,64420254,64420521,64421471,64423043,64423244,64424723,64425182,64425457,64425909,64428120,64430287,64431823,64433603,64434623,64434909,64435674,64439315,64445131,64448684	1.000000
HT1080_cytosolic_fraction	chr1	93694161	93694236	93694233	+	RAMPAGE_only	7	8	43	1.888117	5.019061	chr1	93694220	93694245	LINE|CR1|L3	-	chr1	93693122	93702503	MSTRG.1279.3	+	93693122,93694013,93694278,93697048,93699135	93693515,93694174,93694445,93697211,93702503	0.953488
HT1080_cytosolic_fraction	chr14	105024993	105025023	105025008	-	High_confidence	14	14	63	2.766311	4.962520	chr14	105024875	105025057	LTR|ERVL-MaLR|MLT1H	-	chr14	105009935	105025082	MSTRG.8098.2	-	105009935,105024887	105011935,105025082	0.809524
HT1080_cytosolic_fraction	chr14	50756896	50756943	50756942	-	RAMPAGE_only	3	3	10	0.439097	2.846439	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
HT1080_cytosolic_fraction	chr7	24971674	24971697	24971674	-	RAMPAGE_only	1	1	7	0.307368	2.584963	chr7	24971673	24971815	SINE|MIR|MIR	+	chr7	24796538	24980188	OSBPL3|ENST00000313367.6	-	24796538,24804314,24806775,24809806,24815058,24816609,24820174,24830767,24834485,24840689,24842278,24849068,24852503,24861612,24863199,24863495,24865341,24866069,24870731,24871741,24871952,24892376,24979885	24800279,24804437,24806902,24809951,24815203,24816688,24820238,24830905,24834736,24840783,24842413,24849176,24852634,24861769,24863292,24863599,24865465,24866237,24870845,24871795,24872069,24892621,24980188	0.857143
HT1080_cytosolic_fraction	chrX	152697654	152697655	152697654	-	RAMPAGE_only	6	7	7	0.307368	2.584963	chrX	152697622	152697771	LINE|L1|L1MEh	+	chrX	152574704	152698704	MSTRG.26717.6	-	152574704,152635881,152639603,152697594,152698630	152574980,152635987,152639794,152697653,152698704	0.714286
HT1080_cytosolic_fraction	chr8	29735252	29735255	29735252	-	High_confidence	3	3	8	0.351278	2.750000	chr8	29735013	29735262	SINE|MIR|MIR	-	chr8	29673921	29735223	LINC00589|ENST00000518623.5	-	29673921,29677909,29726155,29735170	29674443,29678004,29726423,29735223	0.875000
HT1080_cytosolic_fraction	chr15	65244454	65244455	65244454	-	High_confidence	2516	2750	3306	145.165470	6.518874	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65244455	MSTRG.8800.1	-	65234459,65244370	65234823,65244455	0.983969
HT1080_cytosolic_fraction	chr4	1256377	1256378	1256377	+	RAMPAGE_only	8	8	10	0.439097	2.921928	chr4	1256182	1256542	LTR|ERVL-MaLR|THE1B	+	chr4	1252990	1266163	CTBP1-DT|ENST00000505364.1	+	1252990,1265339	1254589,1266163	0.500000
HT1080_cytosolic_fraction	chr16	84390626	84390670	84390650	+	RAMPAGE_only	5	7	22	0.966013	4.243300	chr16	84390582	84390800	LINE|L1|L1MB5	+	chr16	84368526	84464178	ATP2C2|ENST00000262429.8	+	84368526,84398498,84405127,84408404,84410567,84410703,84415482,84422389,84422628,84423187,84425734,84439165,84439426,84440856,84442509,84446328,84448532,84451920,84453137,84453320,84454817,84459119,84459269,84460653,84461713,84461987,84463613	84368714,84398609,84405244,84408494,84410603,84410765,84415591,84422539,84422697,84423263,84425801,84439290,84439524,84440958,84442599,84446430,84448689,84452091,84453235,84453371,84454984,84459188,84459386,84460801,84461812,84462129,84464178	0.590909
HT1080_cytosolic_fraction	chr19	50379825	50379860	50379859	+	RAMPAGE_only	4	5	13	0.570826	2.918296	chr19	50379903	50379991	SINE|MIR|MIRc	+	chr19	50377244	50382944	NR1H2|ENST00000593926.5	+	50377244,50377586,50377732,50378148,50378521,50379001,50379779,50381965,50382455	50377328,50377648,50377870,50378439,50378796,50379181,50379879,50382174,50382944	0.923077
HT1080_cytosolic_fraction	chr12	26914518	26914559	26914558	-	RAMPAGE_only	5	5	22	0.966013	3.594466	chr12	26914520	26914587	LINE|RTE-BovB|MamRTE1	+	chr12	26905180	26917734	INTS13|ENST00000538155.5	-	26905180,26906301,26911177,26913456,26913973,26916001,26917351,26917643	26905536,26906437,26911317,26913687,26914128,26916180,26917441,26917734	0.954545
HT1080_cytosolic_fraction	chr1	23394872	23394892	23394891	-	RAMPAGE_only	3	3	13	0.570826	3.084963	chr1	23394711	23394848	SINE|MIR|MIRc	-	chr1	23381060	23424740	TCEA3|ENST00000450454.6	-	23381060,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23381474,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424740	0.923077
HT1080_cytosolic_fraction	chr19	55280196	55280236	55280218	-	High_confidence	13	23	85	3.732325	3.762979	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
HT1080_cytosolic_fraction	chr6	149896010	149896011	149896010	-	High_confidence	9	9	10	0.439097	2.947703	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.900000
HT1080_cytosolic_fraction	chr1	154975518	154975525	154975524	+	High_confidence	3	3	7	0.307368	2.807355	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.571429
HT1080_cytosolic_fraction	chr22	45688924	45688951	45688950	+	RAMPAGE_only	3	3	8	0.351278	2.500000	chr22	45688809	45689096	DNA|TcMar-Tigger|MamRep137	-	chr22	45672187	45718464	ATXN10|ENST00000498009.5	+	45672187,45689711,45692995,45700281,45702688,45718412	45672477,45689903,45693078,45700378,45702847,45718464	0.875000
HT1080_cytosolic_fraction	chr13	87811221	87811266	87811265	-	High_confidence	7	7	43	1.888117	5.071928	chr13	87810512	87811351	LTR|ERV1|LTR1A2	-	chr13	87807633	87811232	AL445647.1|ENST00000606221.1	-	87807633	87811232	0.860465
HT1080_cytosolic_fraction	chr14	105032853	105032859	105032853	+	High_confidence	190	203	281	12.338626	6.483503	chr14	105032452	105033003	LTR|ERV1|MER41A	+	chr14	105032818	105055787	MSTRG.8099.2	+	105032818,105055405	105033190,105055787	0.782918
HT1080_cytosolic_fraction	chr12	70468078	70468103	70468078	+	High_confidence	23	23	84	3.688415	5.480526	chr12	70467961	70468294	LTR|ERV1|MER61A	+	chr12	70468084	70543040	AC025569.1|ENST00000548687.5	+	70468084,70510211,70510407,70513184,70520198,70520785,70522523,70527674,70538049	70468327,70510284,70510577,70513227,70520267,70520928,70522630,70527738,70543040	0.690476
HT1080_cytosolic_fraction	chr17	76773076	76773096	76773095	+	High_confidence	4	5	12	0.526916	2.732159	chr17	76772816	76773304	LINE|L1|L1MEc	-	chr17	76773096	76778338	MFSD11|ENST00000590070.1	+	76773096,76774996,76776405,76778187	76773351,76775171,76776541,76778338	0.916667
HT1080_cytosolic_fraction	chr20	35307058	35307091	35307090	-	High_confidence	54	54	131	5.752171	5.430005	chr20	35306926	35307046	SINE|MIR|MIR3	-	chr20	35302565	35307082	UQCC1|ENST00000472559.5	-	35302565,35306665	35304069,35307082	0.984733
HT1080_cytosolic_fraction	chr1	112936000	112936022	112936000	-	High_confidence	27	30	103	4.522699	4.893610	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	0.970874
HT1080_cytosolic_fraction	chr1	28681084	28681085	28681084	+	RAMPAGE_only	8	8	8	0.351278	3.000000	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	1.000000
HT1080_cytosolic_fraction	chr17	32479853	32479866	32479853	+	High_confidence	5	5	11	0.483007	3.095795	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.818182
HT1080_cytosolic_fraction	chr17	41109938	41109974	41109938	+	RAMPAGE_only	3	3	10	0.439097	2.947703	chr17	41109431	41110019	LINE|L1|L1PA8A	+	chr17	41108023	41116026	MSTRG.11402.1	+	41108023,41110003	41108379,41116026	0.900000
HT1080_cytosolic_fraction	chr8	57978399	57978422	57978399	+	High_confidence	9	9	20	0.878194	3.103702	chr8	57978204	57978556	LTR|ERVL-MaLR|THE1A	+	chr8	57978357	57984126	LINC01602|ENST00000522992.1	+	57978357,57980893,57982265	57978484,57981014,57984126	1.000000
HT1080_cytosolic_fraction	chr22	37849317	37849333	37849317	-	High_confidence	202	209	649	28.497396	5.948058	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.984592
HT1080_cytosolic_fraction	chr11	72111484	72111497	72111496	-	High_confidence	4	6	8	0.351278	2.807355	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72108817	72111497	ANAPC15|ENST00000538117.5	-	72108817,72109228,72110087,72110543,72111156,72111411	72108875,72109341,72110225,72110603,72111281,72111497	0.750000
HT1080_cytosolic_fraction	chr11	9315511	9315517	9315511	-	High_confidence	6	6	16	0.702555	3.750000	chr11	9315325	9315621	SINE|Alu|AluSx1	+	chr11	9280670	9315525	MSTRG.3889.4	-	9280670,9286454,9287701,9288441,9295258,9299583,9314320,9314882,9315297	9283593,9286593,9287806,9288535,9295387,9299701,9314482,9315006,9315525	0.937500
HT1080_cytosolic_fraction	chr3	6507748	6507781	6507780	+	RAMPAGE_only	16	18	64	2.810221	5.170663	chr3	6507654	6507944	SINE|Alu|AluYi6	-	chr3	6490478	6736129	AC069277.1|ENST00000433639.1	+	6490478,6717568,6724449,6732270,6735661	6490672,6717667,6724546,6732495,6736129	0.718750
HT1080_cytosolic_fraction	chr6	109660682	109660706	109660705	-	RAMPAGE_only	4	5	10	0.439097	2.646439	chr6	109660505	109660732	LINE|RTE-X|L4_B_Mam	+	chr6	109644504	109659325	AK9|ENST00000605986.5	-	109644504,109656755,109659227	109644688,109656884,109659325	0.900000
HT1080_cytosolic_fraction	chr8	53945269	53945316	53945315	+	High_confidence	13	13	34	1.492930	4.477025	chr8	53944745	53945626	LINE|L1|L1MB7	+	chr8	53945324	53958697	RGS20|ENST00000517405.1	+	53945324,53946664,53954075,53958269	53945370,53946748,53954310,53958697	0.823529
HT1080_cytosolic_fraction	chr4	72039172	72039192	72039172	+	High_confidence	4	4	12	0.526916	2.918296	chr4	72039053	72039357	SINE|Alu|AluY	-	chr4	72039177	72148061	NPFFR2|ENST00000395999.5	+	72039177,72068912,72128584,72138039,72146977	72039413,72069023,72128919,72138139,72148061	1.000000
HT1080_cytosolic_fraction	chr12	127060685	127060743	127060685	+	High_confidence	5	5	30	1.317291	4.182006	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060473	127170269	MSTRG.6558.1	+	127060473,127119553,127145711,127150201,127150411,127165251,127168364	127061334,127119678,127149478,127150312,127154344,127165403,127170269	0.933333
HT1080_cytosolic_fraction	chr14	71143263	71143295	71143263	-	High_confidence	38	45	98	4.303151	5.781559	chr14	71143047	71143431	LTR|ERVL-MaLR|MLT1A1	-	chr14	71141124	71143253	AC004817.3|ENST00000602957.1	-	71141124	71143253	0.826531
HT1080_cytosolic_fraction	chr2	73736756	73736757	73736756	-	High_confidence	42	42	45	1.975937	4.386016	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73731905	73737335	TPRKB|ENST00000470012.1	-	73731905,73732583,73734428,73737301	73732285,73732700,73734591,73737335	0.688889
HT1080_cytosolic_fraction	chr10	32954333	32954340	32954339	-	RAMPAGE_only	5	6	12	0.526916	3.584963	chr10	32953969	32954360	LINE|L2|L2	+	chr10	32928149	32955663	ITGB1|ENST00000480226.5	-	32928149,32929821,32932514,32935491,32955569	32928264,32930044,32932600,32935558,32955663	1.000000
HT1080_cytosolic_fraction	chr15	60391144	60391145	60391144	-	High_confidence	5	5	7	0.307368	2.584963	chr15	60391133	60391257	SINE|MIR|MIRc	-	chr15	60357193	60391151	ANXA2|ENST00000558986.5	-	60357193,60360940,60364428,60382341,60386027,60390212,60391107	60357236,60361054,60364523,60382441,60386086,60390317,60391151	0.571429
HT1080_cytosolic_fraction	chr2	6918663	6918680	6918679	-	High_confidence	6	6	23	1.009923	3.975418	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.695652
HT1080_cytosolic_fraction	chr6	149896046	149896056	149896046	-	High_confidence	4	4	9	0.395187	3.000000	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149883374	149896059	RAET1E|NM_001243328.1	-	149883374,149889347,149889884,149890816,149895845	149884504,149889623,149890145,149891034,149896059	0.888889
HT1080_cytosolic_fraction	chr22	41256710	41256755	41256710	-	RAMPAGE_only	3	3	12	0.526916	2.845351	chr22	41256522	41256664	SINE|MIR|MIRb	-	chr22	41245614	41282514	RANGAP1|ENST00000455915.6	-	41245614,41249329,41249728,41251006,41252871,41254307,41256020,41256190,41256710,41257947,41261445,41264663,41268096,41274599,41280932	41246672,41249451,41249817,41251109,41252991,41254494,41256105,41256290,41256824,41258106,41261580,41264843,41268156,41274727,41282514	0.916667
HT1080_cytosolic_fraction	chr9	77822994	77823008	77822997	-	RAMPAGE_only	22	30	78	3.424957	5.221097	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77716273	78031449	GNAQ|NM_002072.4	-	77716273,77728513,77794462,77797519,77815615,77922160,78031099	77721513,77728667,77794592,77797648,77815770,77922345,78031449	0.961538
HT1080_cytosolic_fraction	chrX	283484	283509	283506	+	High_confidence	6	8	21	0.922104	3.916127	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	1.000000
HT1080_cytosolic_fraction	chr6	149895958	149895972	149895958	-	High_confidence	3	3	10	0.439097	3.121928	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	1.000000
HT1080_cytosolic_fraction	chr12	121950273	121950309	121950291	+	High_confidence	99	99	182	7.991565	6.036677	chr12	121949929	121950482	LINE|L1|L1MB5	+	chr12	121950249	121972290	MSTRG.6474.19	+	121950249,121951479,121954119,121957073,121958271,121958942,121960584,121961977,121966954,121968005,121969681	121950336,121951530,121954334,121957268,121958522,121959094,121960758,121962162,121967069,121968169,121972290	0.972527
HT1080_cytosolic_fraction	chr7	121062866	121062867	121062866	+	High_confidence	26	26	31	1.361201	4.506891	chr7	121062672	121063032	LTR|ERVL-MaLR|THE1B	+	chr7	121062876	121297444	MSTRG.23638.10	+	121062876,121064237,121097698,121099925,121124330,121125819,121127089,121128381,121130124,121133822,121136039,121140826,121141972,121236713,121244201,121266226,121266706,121267214,121271283,121295439	121062896,121064313,121097831,121100094,121124473,121125892,121127257,121128486,121130294,121133893,121136090,121141013,121142141,121236831,121244338,121266447,121266808,121267302,121271430,121297444	0.870968
HT1080_cytosolic_fraction	chr4	131379753	131379774	131379753	+	High_confidence	7	7	24	1.053833	3.653107	chr4	131379190	131380342	LTR|ERV1|LTR12D	+	chr4	131380012	131528121	LINC02377|ENST00000500169.6	+	131380012,131527229,131528059	131380341,131527288,131528121	0.666667
HT1080_cytosolic_fraction	chr16	9068529	9068549	9068529	+	High_confidence	2	2	8	0.351278	2.521641	chr16	9068535	9068620	LTR|ERVL-MaLR|MLT1J1	+	chr16	9068553	9072412	AC087190.2|ENST00000562893.1	+	9068553,9070852,9071890	9068653,9070983,9072412	0.625000
HT1080_cytosolic_fraction	chr3	33130053	33130066	33130053	+	RAMPAGE_only	2	2	7	0.307368	2.521641	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	1.000000
HT1080_cytosolic_fraction	chr7	101217578	101217599	101217578	-	High_confidence	13	14	50	2.195485	5.268758	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
HT1080_cytosolic_fraction	chr20	37297344	37297345	37297344	+	High_confidence	8	8	8	0.351278	3.000000	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
HT1080_cytosolic_fraction	chr9	39810023	39810099	39810033	-	High_confidence	38	38	101	4.434880	5.140803	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803687	39810063	MSTRG.25232.3	-	39803687,39809485,39809730	39803859,39809615,39810063	0.871287
HT1080_cytosolic_fraction	chr10	103181328	103181329	103181328	-	RAMPAGE_only	23	23	23	1.009923	3.762267	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.695652
HT1080_cytosolic_fraction	chr7	101308276	101308323	101308299	+	High_confidence	11	15	38	1.668569	4.734512	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.947368
HT1080_cytosolic_fraction	chr10	52455292	52455324	52455292	-	High_confidence	116	122	313	13.743736	6.675642	chr10	52454703	52455679	LINE|L2|L2a	+	chr10	52450873	52455272	LNCAROD|ENST00000435813.6	-	52450873,52454585,52455105	52451517,52454749,52455272	0.760383
HT1080_cytosolic_fraction	chr1	223230669	223230678	223230669	-	High_confidence	7	7	27	1.185562	4.106377	chr1	223230613	223230720	SINE|MIR|MIRb	-	chr1	223227614	223230747	SUSD4|ENST00000470249.1	-	223227614,223229196,223230537	223227738,223229388,223230747	0.814815
HT1080_cytosolic_fraction	chr7	12556515	12556540	12556525	+	RAMPAGE_only	3	3	12	0.526916	3.251629	chr7	12555201	12556721	LTR|ERV1|LTR12C	-	chr7	12570576	12653104	SCIN|ENST00000341757.9	+	12570576,12578063,12581059,12604513,12622800,12625009,12625761,12626583,12629100,12636044,12640346,12644583,12649466,12651840,12652587	12570985,12578218,12581221,12604663,12622893,12625142,12625850,12626799,12629222,12636135,12640517,12644705,12649544,12651901,12653104	0.583333
HT1080_cytosolic_fraction	chr8	140646157	140646158	140646157	+	High_confidence	619	640	641	28.146118	4.389326	chr8	140646157	140646459	SINE|Alu|AluY	+	chr8	140646164	140646450	MSTRG.24850.1	+	140646164	140646450	0.959438
HT1080_cytosolic_fraction	chr1	93845844	93845845	93845844	-	RAMPAGE_only	10	11	13	0.570826	3.026987	chr1	93845589	93846003	LTR|ERVL|LTR40c	+	chr1	93777802	93848123	MSTRG.1277.13	-	93777802,93845566,93846952	93784191,93845712,93848123	0.769231
HT1080_cytosolic_fraction	chr13	99496792	99496812	99496798	-	High_confidence	4	4	18	0.790375	3.572469	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.611111
HT1080_cytosolic_fraction	chr5	135995465	135995466	135995465	+	RAMPAGE_only	33	39	40	1.756388	4.836434	chr5	135995297	135995698	LTR|ERVL-MaLR|MLT1A1	+	chr5	136028894	136063818	TGFBI|NM_000358.2	+	136028894,136033762,136044057,136046334,136046850,136047273,136049438,136052906,136053942,136054715,136055679,136056664,136059089,136060833,136061499,136062662,136063185	136029189,136033861,136044122,136046495,136047015,136047420,136049580,136053119,136054080,136054861,136055816,136056795,136059214,136060936,136061579,136062687,136063818	0.575000
HT1080_cytosolic_fraction	chr16	4355592	4355593	4355592	-	High_confidence	424	431	431	18.925081	5.289888	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.923434
HT1080_cytosolic_fraction	chr11	14337098	14337157	14337098	-	High_confidence	4	4	25	1.097743	4.163856	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.600000
HT1080_cytosolic_fraction	chr3	135965673	135965765	135965723	+	High_confidence	43	65	383	16.817415	6.659822	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.895561
HT1080_cytosolic_fraction	chr10	25466136	25466179	25466178	+	High_confidence	17	18	31	1.361201	4.128079	chr10	25466034	25466313	LTR|ERV1|LTR12F	+	chr10	25466189	25602226	MSTRG.2819.3	+	25466189,25466650,25480836,25550975,25572648,25589006,25594291,25596642,25597771	25466358,25466719,25480910,25551085,25572887,25589145,25594397,25596789,25602226	0.612903
HT1080_cytosolic_fraction	chr14	76258254	76258279	76258254	+	RAMPAGE_only	3	4	8	0.351278	2.750000	chr14	76257889	76258388	LTR|ERVL-MaLR|MLT1K	-	chr14	76235816	76263474	AC016526.2|ENST00000554225.1	+	76235816,76252050,76263199	76236003,76252108,76263474	0.500000
HT1080_cytosolic_fraction	chr17	42814917	42814918	42814917	-	High_confidence	6	6	8	0.351278	2.750000	chr17	42814830	42815625	LINE|L2|L2b	+	chr17	42810309	42814673	BECN1|ENST00000588276.5	-	42810309,42814523	42810928,42814673	0.750000
HT1080_cytosolic_fraction	chr12	89449220	89449224	89449223	-	RAMPAGE_only	5	5	11	0.483007	2.921928	chr12	89449194	89449260	SINE|MIR|MIRc	+	chr12	89420786	89461842	POC1B|ENST00000546740.5	-	89420786,89425160,89461621	89421257,89425379,89461842	0.727273
HT1080_cytosolic_fraction	chr2	200810420	200810443	200810420	+	High_confidence	7	7	15	0.658646	3.323231	chr2	200810349	200810468	LINE|L2|L2c	+	chr2	200810593	200817167	BZW1|ENST00000450637.5	+	200810593,200813207,200815340,200815666,200816324,200817105	200810697,200813281,200815517,200815761,200816390,200817167	1.000000
HT1080_cytosolic_fraction	chr4	77011245	77011280	77011249	+	RAMPAGE_only	26	29	75	3.293228	5.387226	chr4	77011235	77011415	DNA|hAT-Charlie|MER117	+	chr4	77014870	77021639	SEPT11|ENST00000506047.1	+	77014870,77019164,77020501	77015017,77019261,77021639	0.506667
HT1080_cytosolic_fraction	chr20	44887711	44887735	44887734	+	RAMPAGE_only	7	7	14	0.614736	2.753434	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885751	44906504	MSTRG.16316.6	+	44885751,44887651,44901530,44903992,44904967,44906000,44906381	44885886,44887742,44901833,44904116,44905131,44906096,44906504	1.000000
HT1080_cytosolic_fraction	chr10	84494506	84494526	84494506	+	RAMPAGE_only	3	3	10	0.439097	2.521928	chr10	84494212	84494563	LTR|ERV1|MER41B	-	chr10	84452216	84513870	CCSER2|ENST00000480006.1	+	84452216,84463932,84470371,84477574,84513448	84452305,84464016,84470458,84477664,84513870	0.800000
HT1080_cytosolic_fraction	chr5	140700445	140700452	140700445	+	High_confidence	966	1134	2156	94.669314	4.705095	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.987477
HT1080_cytosolic_fraction	chr10	65570465	65570475	65570465	+	High_confidence	6	8	11	0.483007	2.913977	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570451	65615757	LINC01515|ENST00000601979.5	+	65570451,65572934,65585484,65585664,65615635	65570545,65573056,65585567,65585802,65615757	0.818182
HT1080_cytosolic_fraction	chr12	9645301	9645305	9645304	+	RAMPAGE_only	6	6	10	0.439097	3.169925	chr12	9645124	9645474	LTR|ERVL-MaLR|THE1B	+	chr12	9642867	9658415	LOC374443|NR_046449.2	+	9642867,9653682,9655872,9656920	9643103,9653808,9655979,9658415	0.700000
HT1080_cytosolic_fraction	chr13	43055406	43055411	43055406	+	RAMPAGE_only	18	19	38	1.668569	4.382021	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.763158
HT1080_cytosolic_fraction	chr18	7946875	7946898	7946878	+	High_confidence	67	67	178	7.815927	5.947110	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8296455	MSTRG.12353.6	+	7946869,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8143646,8244057,8247844,8248149,8296367	7946977,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8143779,8244209,8247919,8248176,8296455	0.988764
HT1080_cytosolic_fraction	chr10	4764045	4764093	4764075	-	High_confidence	48	49	371	16.290499	5.755803	chr10	4763726	4764076	LTR|ERV1|MER89	+	chr10	4745270	4764117	MSTRG.2671.1	-	4745270,4762327,4763965	4761866,4762533,4764117	0.946092
HT1080_cytosolic_fraction	chr16	58755976	58755977	58755976	-	RAMPAGE_only	10	10	10	0.439097	2.921928	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
HT1080_cytosolic_fraction	chr1	148279251	148279284	148279273	+	High_confidence	71	77	383	16.817415	6.421171	chr1	148279033	148279814	LINE|L1|L1MEc	+	chr1	148279254	148291861	MSTRG.1612.2	+	148279254,148287689,148288005	148279531,148287915,148291861	0.934726
HT1080_cytosolic_fraction	chr13	52661494	52661529	52661528	+	RAMPAGE_only	3	5	20	0.878194	3.684184	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
HT1080_cytosolic_fraction	chr11	108694073	108694095	108694073	+	RAMPAGE_only	3	3	13	0.570826	3.546594	chr11	108693990	108694260	DNA|TcMar-Tigger|MER44B	-	chr11	108665121	108922243	DDX10|ENST00000526794.1	+	108665121,108673466,108675595,108677084,108678314,108679370,108688935,108691875,108693515,108706738,108715878,108719796,108722996,108838445,108841314,108852152,108917872	108665339,108673527,108675726,108677243,108678435,108679560,108689062,108692038,108693600,108706837,108715966,108719885,108723462,108838565,108841476,108852209,108922243	1.000000
HT1080_cytosolic_fraction	chr7	40815600	40815655	40815634	+	High_confidence	159	195	1180	51.813446	6.796739	chr7	40810256	40816712	LINE|L1|L1PA16	-	chr7	40815564	40860763	MSTRG.23087.10	+	40815564,40860315	40815803,40860763	0.944915
HT1080_cytosolic_fraction	chr8	143281653	143281687	143281686	-	High_confidence	105	120	484	21.252295	5.323101	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.745868
HT1080_cytosolic_fraction	chr8	31207451	31207452	31207451	+	High_confidence	797	944	959	42.109403	7.018413	chr8	31207253	31207619	LTR|ERVL-MaLR|THE1D	+	chr8	31207461	31389762	MSTRG.24210.1	+	31207461,31384156	31207542,31389762	0.928050
HT1080_cytosolic_fraction	chr8	83403738	83403739	83403738	+	High_confidence	54	54	55	2.415034	5.018324	chr8	83402757	83404051	LTR|ERV1|LTR12C	+	chr8	83403757	83408900	LINC01419|NR_122034.1	+	83403757,83407691	83404069,83408900	0.945455
HT1080_cytosolic_fraction	chr17	69175776	69175789	69175788	-	High_confidence	6	7	12	0.526916	3.095795	chr17	69175735	69175831	DNA|TcMar-Tigger|MER44B	-	chr17	69148498	69175781	ABCA10|ENST00000519732.5	-	69148498,69149032,69149983,69152042,69152361,69153304,69153470,69153830,69154234,69155018,69155804,69156831,69164073,69164963,69174280,69175405,69175618	69148925,69149088,69150063,69152183,69152481,69153399,69153546,69154009,69154326,69155136,69155925,69156923,69164154,69165083,69174394,69175513,69175781	0.916667
HT1080_cytosolic_fraction	chr13	43057965	43057975	43057974	+	RAMPAGE_only	4	4	8	0.351278	2.521641	chr13	43056898	43059152	LINE|L1|L1PB1	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.750000
HT1080_cytosolic_fraction	chr2	1442059	1442060	1442059	+	RAMPAGE_only	40	40	44	1.932027	4.687291	chr2	1441881	1442219	LTR|ERVL-MaLR|THE1B	+	chr2	1433471	1543711	TPO|ENST00000422464.5	+	1433471,1436251,1453693,1456075,1477085,1484595,1487820,1493801,1495988,1496594,1516882,1540593	1433607,1436384,1453823,1456282,1477604,1484854,1487991,1494039,1496197,1496765,1516982,1543711	0.977273
HT1080_cytosolic_fraction	chr7	76439670	76439700	76439696	+	High_confidence	13	18	38	1.668569	3.872542	chr7	76439423	76439703	SINE|Alu|AluJb	+	chr7	76439897	76442071	ZP3|ENST00000467555.1	+	76439897,76440249,76440474,76441841	76439990,76440341,76440611,76442071	1.000000
HT1080_cytosolic_fraction	chr18	14970170	14970187	14970186	-	High_confidence	14	14	25	1.097743	4.105389	chr18	14970079	14970190	DNA|hAT-Charlie|MER5A1	-	chr18	14969605	14970468	LINC01444|ENST00000580867.1	-	14969605,14969877	14969778,14970468	0.720000
HT1080_cytosolic_fraction	chr17	41871754	41871791	41871754	-	RAMPAGE_only	3	3	9	0.395187	3.000000	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.666667
HT1080_cytosolic_fraction	chr12	129109673	129109674	129109673	+	High_confidence	690	737	816	35.830316	5.404639	chr12	129109479	129109833	LTR|ERVL-MaLR|THE1A	+	chr12	129109689	129113298	LOC283352|NR_104172.1	+	129109689,129110992,129111419,129113064	129109757,129111139,129111515,129113298	0.919118
HT1080_cytosolic_fraction	chr15	82093492	82093493	82093492	+	High_confidence	11	12	12	0.526916	3.584963	chr15	82093373	82093640	LTR|ERVL-MaLR|MLT1A0	-	chr15	82093977	82101510	MSTRG.9053.4	+	82093977,82095481,82099404	82094234,82098979,82101510	0.833333
HT1080_cytosolic_fraction	chr11	67619986	67619987	67619986	+	High_confidence	1191	1195	1216	53.394196	5.302800	chr11	67618852	67620425	LTR|ERV1|LTR12C	+	chr11	67619993	67629505	MSTRG.4493.1	+	67619993,67626053	67620536,67629505	0.979441
HT1080_cytosolic_fraction	chr4	105399940	105399962	105399961	-	High_confidence	47	48	119	5.225254	5.497269	chr4	105399771	105400125	DNA|TcMar-Tigger|Tigger7	+	chr4	105369564	105399636	PPA2|ENST00000513605.5	-	105369564,105370836,105386566,105396248,105399036	105369753,105370873,105386636,105396334,105399636	0.983193
HT1080_cytosolic_fraction	chr7	1533101	1533129	1533118	+	RAMPAGE_only	3	3	14	0.614736	3.182006	chr7	1533060	1533178	SINE|MIR|MIR3	-	chr7	1530731	1543043	MAFK|NM_002360.3	+	1530731,1539148,1539940	1530898,1539228,1543043	0.785714
HT1080_cytosolic_fraction	chr2	231072214	231072248	231072214	+	RAMPAGE_only	2	3	10	0.439097	2.725481	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.900000
HT1080_cytosolic_fraction	chr21	22190703	22190717	22190703	-	High_confidence	22	22	60	2.634582	4.924567	chr21	22190554	22190821	SINE|Alu|AluY	+	chr21	22085716	22190717	MSTRG.16631.5	-	22085716,22096528,22116403,22120720,22190494	22092638,22096586,22116486,22120892,22190717	0.716667
HT1080_cytosolic_fraction	chr4	88533222	88533225	88533222	-	RAMPAGE_only	112	115	183	8.035475	5.054219	chr4	88532886	88533429	LTR|ERVL|MLT2A2	-	chr4	88520984	88523813	PYURF|ENST00000273968.4	-	88520984,88523497	88522029,88523813	0.918033
HT1080_cytosolic_fraction	chr17	56203696	56203730	56203729	+	RAMPAGE_only	10	11	36	1.580749	4.910992	chr17	56203673	56203769	LTR|ERVL-MaLR|MLT1I	-	chr17	56227916	56258359	ANKFN1|ENST00000573365.2	+	56227916,56245704,56252221,56254115,56257935	56227957,56245814,56252308,56254220,56258359	0.527778
HT1080_cytosolic_fraction	chr6	158720737	158720775	158720737	+	High_confidence	4	5	24	1.053833	3.795089	chr6	158720644	158720795	SINE|MIR|MIR	-	chr6	158720648	158764869	MSTRG.22714.6	+	158720648,158725502,158745479,158751927,158757210,158760639,158762075,158763303,158764494	158720856,158725637,158745658,158752030,158757381,158760745,158762178,158763509,158764869	0.916667
HT1080_cytosolic_fraction	chr9	129489063	129489126	129489125	+	High_confidence	12	15	58	2.546763	4.973770	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.879310
HT1080_cytosolic_fraction	chr6	149896112	149896148	149896129	-	High_confidence	16	19	49	2.151575	5.134919	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149883374	149896144	MSTRG.22641.10	-	149883374,149888538,149889347,149889884,149890816,149895845	149884504,149888667,149889623,149890145,149891034,149896144	1.000000
HT1080_cytosolic_fraction	chr7	158863388	158863401	158863400	+	RAMPAGE_only	5	5	14	0.614736	3.546594	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.928571
HT1080_cytosolic_fraction	chr15	55221541	55221562	55221561	-	RAMPAGE_only	2	3	8	0.351278	2.521641	chr15	55221538	55221605	DNA|hAT-Charlie|MER5B	+	chr15	55202965	55270286	RAB27A|NM_183234.2	-	55202965,55223888,55228608,55230400,55234781,55238402,55270164	55205705,55224012,55228712,55230486,55234956,55238491,55270286	0.875000
HT1080_cytosolic_fraction	chr3	101485417	101485464	101485417	-	RAMPAGE_only	13	14	30	1.317291	4.348394	chr3	101484371	101487275	LINE|L1|L1PBa	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.966667
HT1080_cytosolic_fraction	chr1	37807676	37807703	37807676	-	High_confidence	3	3	10	0.439097	2.947703	chr1	37807628	37807725	SINE|MIR|MIR1_Amn	+	chr1	37802943	37808185	YRDC|ENST00000373044.2	-	37802943,37804301,37806856,37807100,37807791	37803997,37804444,37806976,37807215,37808185	0.900000
HT1080_cytosolic_fraction	chr1	241419841	241419842	241419841	+	RAMPAGE_only	9	9	10	0.439097	2.641604	chr1	241419648	241420005	LTR|ERVL-MaLR|THE1B	+	chr1	241424291	241433328	AL359764.1|ENST00000444330.1	+	241424291,241424625,241433171	241424549,241424714,241433328	0.800000
HT1080_cytosolic_fraction	chr7	2242922	2242923	2242922	+	High_confidence	74	75	77	3.381047	5.243105	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.961039
HT1080_cytosolic_fraction	chr4	88533301	88533326	88533301	-	RAMPAGE_only	11	11	37	1.624659	4.736216	chr4	88532886	88533429	LTR|ERVL|MLT2A2	-	chr4	88520984	88523813	PYURF|ENST00000273968.4	-	88520984,88523497	88522029,88523813	0.810811
HT1080_cytosolic_fraction	chr1	159920334	159920485	159920334	-	RAMPAGE_only	9	9	81	3.556686	5.229458	chr1	159920065	159920288	LINE|CR1|L3b	-	chr1	159918106	159923717	TAGLN2|NM_001277224.1	-	159918106,159919273,159919660,159920329,159923435	159918941,159919376,159919835,159920537,159923717	0.950617
HT1080_cytosolic_fraction	chr5	171400153	171400207	171400153	+	RAMPAGE_only	13	19	133	5.839990	5.865396	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171407492	171410884	NPM1|ENST00000524204.1	+	171407492,171410526	171407774,171410884	0.684211
HT1080_cytosolic_fraction	chr1	17759320	17759356	17759330	+	High_confidence	76	103	304	13.348549	6.011859	chr1	17759155	17759614	LTR|ERVL|LTR41	+	chr1	17759278	17827061	MSTRG.380.3	+	17759278,17822984,17825766	17759486,17823356,17827061	0.940789
HT1080_cytosolic_fraction	chr1	53811697	53811704	53811703	-	RAMPAGE_only	5	7	11	0.483007	2.521928	chr1	53810763	53814071	LINE|L1|L1PB1	+	chr1	53765459	53838463	MSTRG.987.1	-	53765459,53772328,53787157,53789132,53793228,53796688,53796898,53800692,53803927,53806424,53807655,53809694,53818970,53825797,53827998,53832489,53838204	53768033,53772489,53787258,53789196,53793279,53796804,53797144,53800848,53804009,53806517,53807791,53809746,53819079,53825936,53828173,53832591,53838463	0.909091
HT1080_cytosolic_fraction	chr4	49495020	49495051	49495044	-	High_confidence	100	106	365	16.027041	6.410938	chr4	49494957	49495361	LTR|ERV1|MER61C	+	chr4	49486925	49495080	MSTRG.19412.9	-	49486925,49488433,49494948	49487096,49488647,49495080	0.868493
HT1080_cytosolic_fraction	chr17	27072759	27072798	27072759	-	RAMPAGE_only	4	4	12	0.526916	2.845351	chr17	27072713	27073027	SINE|Alu|AluJr	+	chr17	27072387	27089241	LOC105371703|NR_135673.1	-	27072387,27076606,27078591,27089093	27072827,27076643,27078732,27089241	0.750000
HT1080_cytosolic_fraction	chr20	3795750	3795789	3795788	+	High_confidence	38	41	220	9.660134	5.690214	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.990909
HT1080_cytosolic_fraction	chrX	16712859	16712890	16712889	-	High_confidence	8	8	22	0.966013	4.201841	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.954545
HT1080_cytosolic_fraction	chr20	31696187	31696188	31696187	-	RAMPAGE_only	11	11	17	0.746465	3.280639	chr20	31696079	31696232	LINE|L2|L2a	+	chr20	31664451	31722330	BCL2L1|NR_134257.1	-	31664451,31666990,31721654	31666086,31667147,31722330	0.941176
HT1080_cytosolic_fraction	chrX	135893593	135893596	135893593	-	High_confidence	4	4	8	0.351278	2.750000	chrX	135893277	135893550	LTR|ERVL|LTR41	-	chrX	135846499	135893585	MSTRG.26673.11	-	135846499,135847971,135883007,135885175,135893327	135846749,135848065,135883256,135885350,135893585	0.500000
HT1080_cytosolic_fraction	chr15	89588205	89588234	89588210	+	RAMPAGE_only	5	5	14	0.614736	3.700440	chr15	89586398	89589443	LINE|L2|L2a	-	chr15	89575586	89628012	TICRR|ENST00000560985.5	+	89575586,89582685,89584288,89585707,89592046,89594414,89595392,89599323,89600584,89601297,89601488,89601736,89602795,89606767,89608802,89616404,89618151,89619707,89621392,89623622,89625935,89626955	89576240,89582965,89584527,89585942,89592176,89594554,89595611,89599475,89600685,89601391,89601568,89601976,89602892,89606825,89608949,89616495,89618210,89619842,89621550,89625786,89626061,89628012	0.785714
HT1080_cytosolic_fraction	chr1	147173203	147173250	147173225	+	High_confidence	7	7	24	1.053833	4.262692	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.750000
HT1080_cytosolic_fraction	chr6	152313903	152313914	152313903	-	RAMPAGE_only	4	4	8	0.351278	2.807355	chr6	152313861	152314306	LINE|L2|L2b	+	chr6	152121779	152311167	SYNE1|ENST00000409694.6	-	152121779,152130719,152132121,152133275,152135103,152136617,152139949,152141202,152143622,152148044,152149476,152151552,152151958,152154891,152155909,152164162,152176393,152180135,152189251,152201823,152206167,152207971,152211493,152213611,152214905,152218256,152219002,152220841,152221425,152224493,152225720,152230546,152231390,152232115,152233780,152234667,152236106,152236816,152239532,152242239,152244536,152249160,152254879,152255590,152256633,152262031,152268055,152269154,152278088,152281806,152283977,152293587,152293959,152300640,152301868,152308488,152309834,152310395,152310687	152122676,152130778,152132214,152133488,152135232,152136818,152140161,152141329,152143765,152148378,152149668,152151690,152152141,152155042,152156097,152164325,152176560,152180294,152189407,152201949,152206362,152208206,152211588,152213759,152215060,152218403,152219185,152221046,152221559,152224664,152225876,152230702,152231567,152232265,152233963,152234800,152236303,152236948,152239706,152242440,152244656,152249262,152255089,152255746,152256765,152262188,152268165,152269286,152278280,152281980,152284172,152293749,152294127,152300781,152302063,152308632,152310017,152310518,152311167	0.875000
HT1080_cytosolic_fraction	chr17	41108229	41108275	41108231	+	High_confidence	206	431	1487	65.293725	6.291653	chr17	41107954	41108546	LTR|ERV1|MER4-int	+	chr17	41108023	41116026	MSTRG.11402.1	+	41108023,41110003	41108379,41116026	0.956288
HT1080_cytosolic_fraction	chr6	129673006	129673031	129673030	-	RAMPAGE_only	6	8	20	0.878194	4.121928	chr6	129672885	129673056	SINE|MIR|MIR3	-	chr6	129576131	129710225	ARHGAP18|ENST00000368149.2	-	129576131,129580069,129583987,129599215,129600641,129605876,129607892,129611532,129616211,129618686,129629352,129634041,129638393,129641815,129710023	129578604,129580131,129584112,129599356,129600848,129605959,129608052,129611610,129616303,129618852,129629522,129634105,129638629,129642018,129710225	0.850000
HT1080_cytosolic_fraction	chr11	12249188	12249214	12249213	+	RAMPAGE_only	2	2	10	0.439097	2.947703	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.900000
HT1080_cytosolic_fraction	chr14	91462123	91462193	91462167	-	High_confidence	4	4	30	1.317291	3.937193	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.900000
HT1080_cytosolic_fraction	chr15	62281957	62281958	62281957	-	High_confidence	43	44	45	1.975937	4.664523	chr15	62281800	62282152	LTR|ERVL-MaLR|THE1A	-	chr15	62271270	62281935	MSTRG.8751.1	-	62271270,62272675,62276052,62281876	62271997,62272768,62276130,62281935	0.755556
HT1080_cytosolic_fraction	chr11	36500421	36500431	36500421	-	RAMPAGE_only	6	6	17	0.746465	3.375000	chr11	36500005	36500736	LINE|L2|L2a	-	chr11	36490376	36496510	TRAF6|ENST00000529150.1	-	36490376,36492550,36494975,36496359	36490650,36492628,36495047,36496510	0.823529
HT1080_cytosolic_fraction	chr20	52105665	52105666	52105665	-	High_confidence	11	11	11	0.483007	3.095795	chr20	52105641	52105800	DNA|hAT-Charlie|MER5A1	-	chr20	52084010	52105644	ZFP64|ENST00000371523.8	-	52084010,52088391,52097372,52098437,52105131	52085266,52088643,52097435,52098587,52105644	1.000000
HT1080_cytosolic_fraction	chr17	48199418	48199435	48199424	-	RAMPAGE_only	14	14	45	1.975937	4.786503	chr17	48199174	48199607	LINE|L2|L2c	+	chr17	48180091	48185179	SKAP1|ENST00000579336.1	-	48180091,48182393,48184722	48180248,48182457,48185179	0.666667
HT1080_cytosolic_fraction	chr2	46903419	46903444	46903419	-	RAMPAGE_only	2	2	9	0.395187	3.000000	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.888889
HT1080_cytosolic_fraction	chr9	82757866	82757867	82757866	-	RAMPAGE_only	6	6	8	0.351278	2.500000	chr9	82751810	82757866	LINE|L1|L1PA3	-	chr9	82744066	82744792	RPS6P12|ENST00000432491.1	-	82744066	82744792	1.000000
HT1080_cytosolic_fraction	chr5	9265514	9265538	9265537	-	High_confidence	4	4	13	0.570826	3.022055	chr5	9265168	9265679	LTR|ERVL|LTR53	+	chr5	9202123	9265545	SEMA5A|ENST00000514923.4	-	9202123,9224673,9226868,9237827,9265433	9202240,9224887,9226967,9237890,9265545	0.769231
HT1080_cytosolic_fraction	chr19	39485770	39485803	39485802	+	High_confidence	7	7	13	0.570826	3.392747	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	0.923077
HT1080_cytosolic_fraction	chr10	17216310	17216311	17216310	-	RAMPAGE_only	121	121	164	7.201191	6.113916	chr10	17216274	17216354	LTR|ERV1|HERVIP10FH-int	+	chr10	17214238	17226898	VIM-AS1|ENST00000437232.5	-	17214238,17216166,17217601,17226855	17215364,17216274,17217675,17226898	0.865854
HT1080_cytosolic_fraction	chr19	45524121	45524140	45524121	+	RAMPAGE_only	3	3	9	0.395187	2.725481	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.888889
HT1080_cytosolic_fraction	chr4	48913191	48913207	48913191	-	RAMPAGE_only	3	3	9	0.395187	2.503258	chr4	48912950	48913251	SINE|Alu|AluJr	+	chr4	48885381	48906937	OCIAD2|ENST00000508069.6	-	48885381,48892771,48894005,48897803,48904483,48906657	48885565,48892889,48894053,48897857,48904611,48906937	0.888889
HT1080_cytosolic_fraction	chr8	15417190	15417225	15417190	+	High_confidence	22	23	42	1.844207	4.509872	chr8	15417004	15417387	LTR|ERVL-MaLR|MSTA	+	chr8	15417214	15673836	TUSC3|ENST00000503191.5	+	15417214,15483385,15623079,15659506,15662155,15673746	15417305,15483483,15623249,15659647,15662296,15673836	0.571429
HT1080_cytosolic_fraction	chr5	117454948	117454953	117454952	+	High_confidence	6	6	18	0.790375	3.690117	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.833333
HT1080_cytosolic_fraction	chr2	179581668	179581671	179581670	-	RAMPAGE_only	6	9	12	0.526916	3.418296	chr2	179581575	179581621	SINE|MIR|MIR	-	chr2	179483319	179584067	ZNF385B|ENST00000439340.1	-	179483319,179518527,179522881,179544826,179583974	179483434,179518638,179522920,179544969,179584067	0.583333
HT1080_cytosolic_fraction	chr7	22562052	22562071	22562070	+	RAMPAGE_only	4	4	19	0.834284	3.836592	chr7	22561901	22562080	DNA|hAT-Charlie|MER5A	+	chr7	22563336	22573996	AC002480.1|ENST00000435127.1	+	22563336,22564965,22571774,22572084	22563430,22565152,22572013,22573996	0.684211
HT1080_cytosolic_fraction	chr19	12800915	12800945	12800944	-	High_confidence	3	3	9	0.395187	2.750000	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.888889
HT1080_cytosolic_fraction	chr9	101039719	101039723	101039719	-	High_confidence	710	801	1103	48.432400	7.165964	chr9	101039545	101039914	LTR|ERVL-MaLR|THE1B	-	chr9	100993075	101039711	MSTRG.25510.4	-	100993075,100994928,101039631	100993328,100995046,101039711	0.754306
HT1080_cytosolic_fraction	chr1	151166642	151166686	151166660	+	High_confidence	12	13	90	3.951873	5.315736	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	0.955556
HT1080_cytosolic_fraction	chr2	217106743	217106803	217106802	-	High_confidence	32	32	227	9.967502	6.211387	chr2	217106623	217106858	LINE|L2|L2c	+	chr2	217100260	217106814	MSTRG.15662.1	-	217100260,217106314,217106689	217103444,217106452,217106814	0.903084
HT1080_cytosolic_fraction	chr21	29077486	29077487	29077486	+	High_confidence	4	4	6	0.263458	2.584963	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.666667
HT1080_cytosolic_fraction	chr5	55851351	55851365	55851361	+	High_confidence	41	41	169	7.420739	6.139759	chr5	55851124	55851720	DNA|TcMar-Tigger|Tigger17a	-	chr5	55851378	55922854	IL31RA|NM_001242638.1	+	55851378,55852194,55853321,55859508,55868790,55872269,55883043,55889969,55896349,55899915,55906105,55907358,55908264,55910531,55913476,55914846,55916643,55922395	55851633,55852312,55853567,55859599,55868908,55872451,55883195,55890135,55896429,55900132,55906288,55907460,55908411,55910672,55913570,55914928,55916834,55922854	0.745562
HT1080_cytosolic_fraction	chr12	72295341	72295351	72295341	+	RAMPAGE_only	3	3	15	0.658646	3.906891	chr12	72293712	72295395	LTR|ERV1|MER52A	-	chr12	72272748	72665642	TRHDE|NM_013381.2	+	72272748,72286680,72377994,72469757,72473066,72499497,72542290,72562164,72562852,72568567,72575254,72575486,72618890,72621107,72621643,72652321,72653015,72656926,72663051	72273557,72286954,72378121,72469912,72473180,72499635,72542356,72562230,72563040,72568656,72575388,72575542,72619038,72621205,72621751,72652489,72653156,72657008,72665642	0.866667
HT1080_cytosolic_fraction	chr7	103353931	103353946	103353931	+	High_confidence	2	3	8	0.351278	2.750000	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.750000
HT1080_cytosolic_fraction	chr12	32573196	32573197	32573196	+	RAMPAGE_only	7	7	8	0.351278	2.807355	chr12	32573102	32573394	SINE|Alu|AluY	-	chr12	32534323	32640737	FGD4|ENST00000525053.5	+	32534323,32564136,32576265,32581959,32598496,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624975,32625653,32633548,32638654,32640275	32534498,32564289,32576449,32582467,32598586,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32625068,32625779,32633689,32638795,32640737	0.875000
HT1080_cytosolic_fraction	chr14	27673209	27673271	27673239	-	High_confidence	8	9	29	1.273381	4.099360	chr14	27673059	27679095	LINE|L1|L1PA3	+	chr14	27321921	27673221	AL390334.1|ENST00000556890.1	-	27321921,27656337,27673028	27322141,27656502,27673221	0.551724
HT1080_cytosolic_fraction	chr11	114295318	114295337	114295336	+	High_confidence	3	4	7	0.307368	2.521641	chr11	114294850	114295386	LTR|ERV1|LTR35A	-	chr11	114295036	114312515	MSTRG.4931.7	+	114295036,114296400,114297950,114312044	114295100,114296710,114298158,114312515	1.000000
HT1080_cytosolic_fraction	chr1	240285250	240285294	240285293	+	High_confidence	9	9	55	2.415034	5.144641	chr1	240285122	240285870	LINE|L2|L2c	-	chr1	240285227	240475183	MSTRG.2564.6	+	240285227,240294821,240329075,240329338,240330602,240333886,240334108,240355815,240392510,240438060,240472371,240474127	240285523,240294883,240329167,240329468,240330749,240333946,240334229,240355908,240392562,240438210,240472453,240475183	0.981818
HT1080_cytosolic_fraction	chr8	36904728	36904729	36904728	+	RAMPAGE_only	23	23	31	1.361201	4.055025	chr8	36904599	36904955	LTR|ERVL-MaLR|MLT1I	+	chr8	36784382	36936125	KCNU1|ENST00000522372.5	+	36784382,36787305,36804026,36805194,36806268,36807374,36808717,36814206,36815595,36817649,36833553,36834785,36836295,36836792,36840462,36840931,36845579,36845801,36864403,36905707,36909310,36910929,36918822,36922489,36922982,36930950,36932919,36935514	36784605,36787425,36804088,36805285,36806380,36807450,36808793,36814377,36815687,36817760,36833659,36834868,36836365,36836945,36840575,36841003,36845669,36845899,36864521,36905804,36909535,36911119,36918897,36922629,36923044,36931145,36933032,36936125	0.967742
HT1080_cytosolic_fraction	chr18	659659	659714	659713	+	RAMPAGE_only	13	14	56	2.458943	4.315610	chr18	659744	659794	LINE|L2|L2a	+	chr18	657742	673484	TYMS|ENST00000323224.7	+	657742,659640,662145,670691,671379,672859	657947,659714,662320,670867,671451,673484	0.875000
HT1080_cytosolic_fraction	chr1	196786489	196786525	196786489	+	RAMPAGE_only	7	7	26	1.141652	3.855389	chr1	196780803	196786955	LINE|L1|L1PA3	-	chr1	196774812	196793488	CFHR3|ENST00000367427.7	+	196774812,196779161,196779796,196788215,196788744,196790044,196793316	196774944,196779356,196779973,196788398,196788944,196790227,196793488	0.923077
HT1080_cytosolic_fraction	chr7	54759973	54759974	54759973	-	High_confidence	31	31	42	1.844207	4.269035	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.857143
HT1080_cytosolic_fraction	chr1	31306496	31306497	31306496	+	RAMPAGE_only	7	7	11	0.483007	2.721928	chr1	31305897	31306635	DNA|TcMar-Tigger|MER44C	-	chr1	31297007	31364936	ZCCHC17|ENST00000373714.5	+	31297007,31310043,31319108,31337174,31338956,31346639,31348828,31364031	31297213,31310164,31319166,31337275,31339048,31346740,31348974,31364936	0.909091
HT1080_cytosolic_fraction	chr17	41108057	41108078	41108057	+	High_confidence	5	5	13	0.570826	3.334679	chr17	41107954	41108546	LTR|ERV1|MER4-int	+	chr17	41108023	41116026	MSTRG.11402.1	+	41108023,41110003	41108379,41116026	1.000000
HT1080_cytosolic_fraction	chr2	230230391	230230425	230230422	+	High_confidence	11	11	42	1.844207	4.967308	chr2	230230011	230230712	LTR|ERV1|LTR8	-	chr2	230230410	230239067	SP140|ENST00000544128.5	+	230230410,230234937,230237082,230238212,230238760	230230528,230235075,230237260,230238381,230239067	0.595238
HT1080_cytosolic_fraction	chr8	116648817	116648840	116648817	-	RAMPAGE_only	2	2	13	0.570826	3.251629	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.923077
HT1080_cytosolic_fraction	chr10	67765094	67765095	67765094	+	High_confidence	27	27	30	1.317291	4.030395	chr10	67765094	67765398	SINE|Alu|AluYi6	+	chr10	67765102	67765383	MSTRG.3070.1	+	67765102	67765383	0.866667
HT1080_cytosolic_fraction	chr14	65285119	65285132	65285119	+	RAMPAGE_only	5	5	11	0.483007	2.921928	chr14	65284944	65285417	LTR|ERVL-MaLR|MLT1C	+	chr14	65410591	65744121	FUT8|ENST00000360689.9	+	65410591,65455620,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65411993,65455718,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65744121	0.727273
HT1080_cytosolic_fraction	chr12	127293630	127293652	127293630	-	High_confidence	21	21	47	2.063756	4.363039	chr12	127293559	127294067	LTR|ERVL|LTR16D2	-	chr12	127284647	127293638	MSTRG.6556.1	-	127284647,127290400,127293457	127285961,127290569,127293638	0.957447
HT1080_cytosolic_fraction	chr4	39032920	39032938	39032920	-	High_confidence	10	11	16	0.702555	3.640224	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	38993734	39032922	TMEM156|ENST00000344606.6	-	38993734,38998723,39032225,39032641	38993998,38998909,39032443,39032922	0.687500
HT1080_cytosolic_fraction	chr11	36453942	36453966	36453965	+	High_confidence	4	4	8	0.351278	2.807355	chr11	36453570	36453996	LINE|L2|L2b	-	chr11	36453949	36462781	PRR5L|ENST00000525672.1	+	36453949,36462341	36454106,36462781	0.625000
HT1080_cytosolic_fraction	chr13	47835950	47835974	47835958	-	RAMPAGE_only	19	19	61	2.678492	4.830419	chr13	47835818	47836328	LTR|ERV1|MER51A	+	chr13	47746437	47935821	SUCLA2|ENST00000647008.1	-	47746437,47797001,47798258,47807393,47907017,47907330,47932693,47934914	47747424,47797212,47798508,47807499,47907135,47907452,47932783,47935821	0.721311
HT1080_cytosolic_fraction	chr3	58526760	58526766	58526765	-	High_confidence	138	139	275	12.075168	5.565385	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	0.981818
HT1080_cytosolic_fraction	chr12	49738995	49739042	49739038	+	High_confidence	14	14	47	2.063756	4.986189	chr12	49735987	49739725	LTR|ERV1|Harlequin-int	+	chr12	49738992	49758483	TMBIM6|ENST00000546796.5	+	49738992,49752463,49752972,49755634,49758226,49758382	49739082,49752549,49753081,49755755,49758275,49758483	0.659574
HT1080_cytosolic_fraction	chr15	65642890	65642917	65642906	+	High_confidence	19	28	67	2.941950	5.504751	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	1.000000
HT1080_cytosolic_fraction	chr21	33945809	33945810	33945809	-	RAMPAGE_only	9	9	9	0.395187	2.503258	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
HT1080_cytosolic_fraction	chr14	105027274	105027294	105027289	-	RAMPAGE_only	3	3	8	0.351278	2.521641	chr14	105027191	105027523	LTR|ERV1|MER57C1	+	chr14	105009935	105025082	MSTRG.8098.2	-	105009935,105024887	105011935,105025082	0.750000
HT1080_cytosolic_fraction	chr1	43361125	43361210	43361209	+	RAMPAGE_only	4	4	35	1.536840	4.063651	chr1	43361240	43361490	LINE|L2|L2	+	chr1	43359012	43363203	CDC20|ENST00000372462.1	+	43359012,43359489,43359724,43359968,43360192,43360498,43360732,43361119,43362194,43362950	43359396,43359638,43359821,43360097,43360389,43360593,43360961,43361245,43362312,43363203	0.942857
HT1080_cytosolic_fraction	chr5	58114588	58114616	58114591	+	High_confidence	33	36	150	6.586455	5.181887	chr5	58114636	58115151	LTR|ERVL|LTR33	+	chr5	58114594	58147108	MSTRG.20457.1	+	58114594,58137711,58141698,58145369	58114759,58137865,58141838,58147108	0.566667
HT1080_cytosolic_fraction	chr4	55948010	55948033	55948021	-	High_confidence	12	12	49	2.151575	4.712581	chr4	55947862	55947994	LTR|ERV1|MER51D	-	chr4	55938310	55948073	MSTRG.19465.1	-	55938310,55940516,55947839	55938955,55940632,55948073	0.938776
HT1080_cytosolic_fraction	chr7	53811930	53811935	53811934	-	High_confidence	7	7	16	0.702555	3.589898	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.812500
HT1080_cytosolic_fraction	chr13	64075750	64075778	64075762	-	High_confidence	11	11	50	2.195485	3.914248	chr13	64074921	64075752	LTR|ERV1|MER52A	-	chr13	63986370	64076011	LINC00355|ENST00000456627.1	-	63986370,63990095,64002384,64003347,64034346,64075241	63987039,63990200,64002409,64003465,64034537,64076011	0.940000
HT1080_cytosolic_fraction	chr3	33864068	33864126	33864068	+	RAMPAGE_only	4	4	23	1.009923	3.653757	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.913043
HT1080_cytosolic_fraction	chrX	16184043	16184095	16184058	-	High_confidence	5	8	42	1.844207	4.683402	chrX	16183245	16184026	LTR|ERV1|HERVH-int	-	chrX	16151342	16184034	MSTRG.26070.1	-	16151342,16153019,16153393,16154597,16157752,16159652,16166983,16167206,16170615,16176064,16177478,16182348,16183880	16152882,16153102,16153463,16154680,16157859,16159695,16167095,16168893,16173524,16176118,16177554,16182537,16184034	0.880952
HT1080_cytosolic_fraction	chr5	139364701	139364714	139364709	+	RAMPAGE_only	3	4	10	0.439097	2.947703	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342441	139369720	PAIP2|ENST00000394795.6	+	139342441,139363758,139364563,139368732	139343406,139363922,139364743,139369720	0.900000
HT1080_cytosolic_fraction	chr10	32953746	32953775	32953774	-	RAMPAGE_only	2	2	6	0.263458	2.584963	chr10	32953663	32953796	SINE|MIR|MIRc	-	chr10	32928149	32955663	ITGB1|ENST00000480226.5	-	32928149,32929821,32932514,32935491,32955569	32928264,32930044,32932600,32935558,32955663	0.833333
HT1080_cytosolic_fraction	chr6	5498430	5498488	5498487	+	High_confidence	264	268	574	25.204168	5.711415	chr6	5498468	5498580	LINE|L2|L2b	+	chr6	5498423	5771429	MSTRG.21502.6	+	5498423,5545179,5613168,5771290	5498556,5545340,5613320,5771429	0.858885
HT1080_cytosolic_fraction	chr1	180558963	180558964	180558963	+	High_confidence	8	8	8	0.351278	3.000000	chr1	180558768	180559133	LTR|ERVL-MaLR|THE1A	+	chr1	180558973	180566518	OVAAL|NR_125716.1	+	180558973,180562203,180565250	180559055,180562344,180566518	1.000000
HT1080_cytosolic_fraction	chr10	110496232	110496274	110496257	-	High_confidence	24	24	103	4.522699	5.138181	chr10	110496171	110496447	LINE|L2|L2b	+	chr10	110475103	110496204	AL355512.1|ENST00000607952.1	-	110475103,110496118	110475226,110496204	0.737864
HT1080_cytosolic_fraction	chr15	66502611	66502741	66502611	-	High_confidence	123	124	777	34.117837	6.351777	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.925354
HT1080_cytosolic_fraction	chrX	135768126	135768144	135768126	-	High_confidence	3	4	12	0.526916	3.584963	chrX	135767891	135768249	LTR|ERVL|LTR41	-	chrX	135760156	135768191	CT45A3|ENST00000598716.2	-	135760156,135761633,135762107,135764275,135768107	135760409,135761727,135762356,135764450,135768191	1.000000
HT1080_cytosolic_fraction	chr1	161102047	161102071	161102053	-	RAMPAGE_only	3	3	9	0.395187	2.750000	chr1	161101763	161102022	SINE|Alu|AluJb	-	chr1	161100555	161118055	PFDN2|ENST00000468311.1	-	161100555,161117951	161100859,161118055	0.777778
HT1080_cytosolic_fraction	chr3	9986887	9986916	9986898	+	High_confidence	18	21	76	3.337137	5.503174	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.618421
HT1080_cytosolic_fraction	chr1	15236515	15236534	15236520	+	RAMPAGE_only	5	5	18	0.790375	3.499228	chr1	15236272	15236744	LTR|ERVL-MaLR|MLT1K	+	chr1	15247271	15398126	FHAD1|ENST00000358897.8	+	15247271,15251770,15272322,15289398,15296683,15301204,15308612,15313056,15316377,15317823,15324451,15327058,15328276,15329345,15341735,15345082,15345415,15349041,15352876,15358109,15360477,15362641,15365826,15367462,15369369,15374501,15375602,15380700,15381230,15382027,15397296	15247395,15251877,15272529,15289666,15296793,15301441,15308736,15313187,15316467,15317928,15324559,15327142,15328429,15329541,15341893,15345190,15345523,15349149,15352984,15358283,15360703,15362726,15365933,15367622,15369502,15374631,15375730,15380796,15381451,15382193,15398126	0.722222
HT1080_cytosolic_fraction	chr11	9716951	9716974	9716951	+	RAMPAGE_only	4	4	10	0.439097	2.947703	chr11	9716634	9717133	LINE|L2|L2	-	chr11	9720065	9738259	SWAP70|ENST00000534662.1	+	9720065,9724657,9728052,9729342,9732528,9738212	9720483,9724885,9728199,9729451,9732710,9738259	0.800000
HT1080_cytosolic_fraction	chr6	26957036	26957057	26957036	+	High_confidence	2	2	15	0.658646	3.589898	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26956992	27023924	LINC00240|ENST00000606878.1	+	26956992,26968457,27023253	26957183,26968522,27023924	0.533333
HT1080_cytosolic_fraction	chr14	51554667	51554696	51554682	+	High_confidence	355	355	1284	56.380055	7.474900	chr14	51553917	51555014	LINE|L1|L1MC3	+	chr14	51554682	51579297	MSTRG.7562.5	+	51554682,51559676,51570347,51578971	51554805,51559747,51570410,51579297	0.637072
HT1080_cytosolic_fraction	chr7	87040214	87040223	87040222	-	High_confidence	41	41	89	3.907963	5.738527	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86907696	87040235	MSTRG.23335.7	-	86907696,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040235	0.966292
HT1080_cytosolic_fraction	chr18	39800293	39800314	39800293	-	High_confidence	53	54	173	7.596378	6.899931	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.531792
HT1080_cytosolic_fraction	chr11	14337249	14337293	14337249	-	High_confidence	18	18	92	4.039692	5.840418	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.510870
HT1080_cytosolic_fraction	chrX	135893379	135893412	135893381	-	High_confidence	91	115	364	15.983131	5.749003	chrX	135893277	135893550	LTR|ERVL|LTR41	-	chrX	135880751	135893428	CT45A10|NM_001291529.1	-	135880751,135882535,135883007,135885175,135893344	135881315,135882629,135883256,135885350,135893428	0.989011
HT1080_cytosolic_fraction	chr20	18793983	18794016	18793986	-	High_confidence	6	6	27	1.185562	4.532665	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18787970	18793982	LINC00652|NR_026884.1	-	18787970,18789573,18793664	18788898,18789709,18793982	0.740741
HT1080_cytosolic_fraction	chr18	1522236	1522240	1522239	-	High_confidence	15	26	37	1.624659	4.085588	chr18	1516189	1522240	LINE|L1|L1PA2	-	chr18	1513940	1522232	MSTRG.12286.1	-	1513940,1514276,1522143	1514047,1514413,1522232	0.810811
HT1080_cytosolic_fraction	chr5	70401442	70401512	70401471	+	RAMPAGE_only	10	12	94	4.127512	5.295665	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.925532
HT1080_cytosolic_fraction	chr19	45642591	45642592	45642591	-	High_confidence	7	7	10	0.439097	2.641604	chr19	45642563	45642613	SINE|MIR|MIR3	+	chr19	45641640	45642562	EML2|ENST00000588172.1	-	45641640,45641917,45642133,45642471	45641748,45642041,45642352,45642562	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	131578909	131578917	131578909	-	High_confidence	4	4	15	0.733285	2.973557	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.600000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	11774276	11774341	11774340	-	High_confidence	9	15	45	2.199855	4.694646	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	0.822222
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	102431154	102431174	102431154	-	High_confidence	3	3	11	0.537742	2.663533	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	33931146	33931225	33931224	+	High_confidence	17	20	71	3.470882	4.343430	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.718310
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	174409993	174410020	174410019	+	High_confidence	56	56	96	4.693024	4.870177	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410036	174428859	SCRN3|ENST00000548921.5	+	174410036,174422884,174424474,174427712	174410225,174423047,174424649,174428859	0.947917
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	53585026	53585028	53585027	-	RAMPAGE_only	10	15	22	1.075485	4.027169	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	131785216	131785244	131785243	-	High_confidence	10	12	32	1.564341	4.577820	chrX	131784983	131785287	SINE|Alu|AluSz	+	chrX	131691995	131785262	FIRRE|ENST00000649391.1	-	131691995,131695466,131695843,131703416,131709497,131711650,131749305,131755597,131756610,131768548,131777622,131783886,131785156	131692636,131695620,131695913,131703518,131709556,131711744,131749458,131755746,131756709,131768696,131777744,131784039,131785262	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	48589102	48589144	48589143	+	RAMPAGE_only	6	6	18	0.879942	3.572431	chr19	48588603	48589545	LINE|L2|L2a	-	chr19	48591100	48599274	SULT2B1|ENST00000594274.1	+	48591100,48591608,48592721,48596738,48599134	48591273,48591735,48592816,48596919,48599274	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	61918681	61918760	61918681	-	High_confidence	4	4	27	1.319913	3.958229	chr16	61918303	61919817	LINE|L1|L1HS	+	chr16	61655559	61918714	MSTRG.20211.5	-	61655559,61713840,61727093,61789345,61817478,61820925,61825011,61857118,61901178,61918257	61655721,61713958,61727215,61789482,61817732,61821113,61825179,61857238,61901473,61918714	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147946672	147946751	147946750	+	High_confidence	18	24	152	7.430621	5.927337	chr5	147941118	147947133	LINE|L1|L1PA3	-	chr5	147946607	147963901	MSTRG.43580.1	+	147946607,147948791,147963709	147947171,147948905,147963901	0.697368
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	16670302	16670338	16670337	-	High_confidence	22	23	111	5.426309	5.699008	chr3	16670253	16670628	LTR|ERVL|MER77B	+	chr3	16637661	16670552	MSTRG.34468.6	-	16637661,16647808,16670277	16638085,16648612,16670552	0.873874
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	66244397	66244412	66244411	+	High_confidence	13	18	31	1.515456	4.281728	chr2	66244338	66247342	LTR|ERV1|HERVH-int	+	chr2	66244206	66273136	MSTRG.27987.1	+	66244206,66246286,66258904,66271305	66244484,66246474,66259022,66273136	0.774194
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	6800312	6800350	6800343	+	RAMPAGE_only	10	10	38	1.857655	4.072374	chr10	6799410	6802500	LTR|ERV1|HERVH-int	-	chr10	6794739	6841238	LINC00707|ENST00000649029.1	+	6794739,6810598,6812249,6817048,6833642,6837973,6840390	6795095,6810763,6812368,6817126,6833688,6838008,6841238	0.842105
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	49396370	49396429	49396370	-	High_confidence	3	5	29	1.417684	4.208410	chr15	49395983	49402014	LINE|L1|L1PA2	+	chr15	49326961	49396442	FAM227B|ENST00000559573.3	-	49326961,49331779,49371301,49395974,49396243	49328675,49331849,49371399,49396097,49396442	0.620690
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	11795578	11795579	11795578	+	High_confidence	35	36	38	1.857655	3.959057	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.947368
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	77421612	77421626	77421625	+	High_confidence	3	3	8	0.391085	2.750000	chr18	77415976	77422002	LINE|L1|L1PA3	-	chr18	77421618	77560763	AC124254.1|ENST00000583629.1	+	77421618,77522831,77560698	77422024,77522922,77560763	0.625000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	37147694	37147696	37147694	-	High_confidence	15	35	37	1.808770	3.604024	chr2	37147318	37147662	LINE|L1|L1PA4	-	chr2	37107272	37147806	EIF2AK2|ENST00000405334.5	-	37107272,37107473,37109193,37114730,37119958,37122505,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687	37107395,37107527,37109295,37114859,37120139,37122664,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147806	0.918919
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	170767522	170767558	170767557	-	High_confidence	15	15	25	1.222142	3.219471	chr5	170767455	170767864	LTR|ERV1|LTR7	-	chr5	170757884	170767558	AC008514.1|ENST00000503797.2	-	170757884,170767307	170757978,170767558	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	14708244	14708261	14708247	-	RAMPAGE_only	5	5	18	0.879942	2.947703	chr12	14707186	14710156	LTR|ERV1|HERVH-int	-	chr12	14697151	14710628	MSTRG.10904.1	-	14697151	14710628	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	114284451	114284472	114284471	+	RAMPAGE_only	8	8	23	1.124370	3.621176	chr8	114282148	114285388	LTR|ERV1|HERVH-int	+	chr8	114282072	114295839	AC064802.1|ENST00000520543.1	+	114282072,114284252,114295465	114282294,114284533,114295839	0.652174
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	97217130	97217201	97217149	+	RAMPAGE_only	26	31	71	3.470882	4.876457	chr9	97216575	97218235	LTR|ERV1|HERVH-int	+	chr9	97214744	97220663	MSTRG.54562.2	+	97214744,97219583	97217380,97220663	0.802817
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	122076063	122076125	122076124	-	RAMPAGE_only	35	72	135	6.599565	4.984638	chr7	122075973	122076203	SINE|Alu|AluY	+	chr7	122075646	122086153	AASS|ENST00000460376.5	-	122075646,122077837,122078861,122081499,122082787,122086011	122076607,122078014,122079712,122081595,122082891,122086153	0.659259
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	43508342	43508428	43508427	+	RAMPAGE_only	17	17	64	3.128683	4.438560	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	0.984375
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	10681560	10681563	10681562	+	RAMPAGE_only	7	12	14	0.684399	3.238901	chr19	10681334	10681610	SINE|Alu|AluJb	+	chr19	10654303	10689847	ILF3|ENST00000587928.5	+	10654303,10670515,10670973,10671357,10677162,10678612,10679096,10679815,10680345,10681018,10681218,10682536,10683124,10683365,10683635,10683916,10684415,10687345,10688549,10689178	10654487,10670608,10671203,10671535,10677310,10678704,10679192,10679927,10680443,10681130,10682192,10682704,10683262,10683542,10683789,10683970,10684476,10687708,10688678,10689847	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	66258936	66258938	66258937	+	RAMPAGE_only	13	19	22	1.075485	3.879664	chr2	66258873	66259181	SINE|Alu|AluJr	-	chr2	66244206	66273136	MSTRG.27987.1	+	66244206,66246286,66258904,66271305	66244484,66246474,66259022,66273136	0.681818
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	62376797	62376801	62376800	-	High_confidence	27	27	43	2.102084	3.623730	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.906977
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	93591534	93591564	93591534	+	High_confidence	30	30	62	3.030911	3.405900	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591264	93811677	MSTRG.49167.1	+	93591264,93807203	93591771,93811677	0.967742
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	114284265	114284383	114284275	+	RAMPAGE_only	23	28	171	8.359449	5.862861	chr8	114282148	114285388	LTR|ERV1|HERVH-int	+	chr8	114282135	114287996	AC064802.1|ENST00000519248.1	+	114282135,114284218,114287721	114282294,114284514,114287996	0.508772
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	29647360	29647361	29647360	+	High_confidence	14	14	18	0.879942	3.836592	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.555556
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	32107655	32107670	32107669	+	High_confidence	4	4	12	0.586628	2.522055	chr1	32107454	32107762	SINE|Alu|AluSq10	+	chr1	32108037	32176568	KPNA6|ENST00000373625.7	+	32108037,32154587,32156852,32157345,32158266,32159399,32160614,32161946,32162360,32163234,32166104,32167168,32169881,32170706	32108134,32154721,32156945,32157445,32158361,32159531,32160703,32162046,32162524,32163313,32166230,32167296,32170060,32176568	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	4891959	4891960	4891959	+	High_confidence	648	660	682	33.340024	5.560660	chrX	4891613	4892064	LTR|ERV1|LTR7	+	chrX	4891736	4899632	MSTRG.55494.1	+	4891736	4899632	0.953079
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	12420104	12420105	12420104	+	High_confidence	6	7	8	0.391085	2.521641	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12420188	12432238	PRELID3A|NM_001142406.1	+	12420188,12421539,12427040,12427220,12429349,12431149	12420493,12421629,12427111,12427323,12429436,12432238	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	102747087	102747088	102747087	+	RAMPAGE_only	10	10	15	0.733285	3.378783	chr11	102741437	102747464	LINE|L1|L1PA3	-	chr11	102783675	102836766	WTAPP1|ENST00000525739.6	+	102783675,102793144,102795147,102798023,102830731,102831467,102833451,102836437	102784064,102793261,102795224,102798122,102830810,102832906,102833564,102836766	0.533333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	21456523	21456561	21456535	-	RAMPAGE_only	5	5	30	1.466570	4.237291	chr19	21455451	21456510	LTR|ERV1|MER4-int	-	chr19	21440645	21463872	MSTRG.25453.1	-	21440645,21453549,21456460,21463743	21449377,21454472,21456588,21463872	0.866667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	212977256	212977275	212977256	+	RAMPAGE_only	5	5	17	0.831056	2.816308	chr1	212977200	212977341	SINE|MIR|MIR3	+	chr1	212951542	212992037	MSTRG.4296.11	+	212951542,212961165,212965721,212966270,212972579,212973954,212991550	212951818,212961254,212965778,212966345,212972961,212989176,212992037	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	53546437	53546496	53546437	-	RAMPAGE_only	10	10	33	1.613227	4.390320	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.787879
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	123652719	123652720	123652719	+	RAMPAGE_only	8	10	11	0.537742	2.721928	chr12	123652708	123652795	LINE|L1|L1M5	+	chr12	123648050	123660232	GTF2H3|ENST00000543154.1	+	123648050,123650993,123652531,123652706,123654923,123659515,123659794,123660045,123660165	123648126,123651056,123652561,123652735,123654998,123659584,123659930,123660082,123660232	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	35093342	35093401	35093342	-	RAMPAGE_only	4	4	18	0.879942	4.058814	chr7	35092957	35098972	LINE|L1|L1PA2	+	chr7	35089843	35107734	DPY19L2P1|ENST00000436258.1	-	35089843,35104643,35106043	35091946,35104763,35107734	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	12665903	12665966	12665965	-	RAMPAGE_only	21	27	49	2.395398	4.235569	chr5	12664853	12667879	LTR|ERV1|HERVH-int	-	chr5	12648258	12668004	MSTRG.41078.4	-	12648258,12667735	12663073,12668004	0.918367
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	18939485	18939493	18939492	+	High_confidence	240	240	599	29.282514	4.962502	chr22	18938673	18939641	LTR|ERVK|LTR5_Hs	+	chr22	18939488	18947294	MSTRG.33137.12	+	18939488	18947294	0.969950
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	167228089	167228148	167228111	+	High_confidence	15	16	69	3.373111	5.182203	chr6	167227674	167231799	LTR|ERV1|HUERS-P1-int	+	chr6	167228299	167237511	HPAT5|ENST00000628362.2	+	167228299,167231826,167232478,167237240	167228397,167231957,167232560,167237511	0.695652
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	116724063	116724122	116724121	+	High_confidence	25	27	111	5.426309	5.518162	chr7	116718497	116724489	LINE|L1|L1PA2	-	chr7	116724145	116755414	MET|ENST00000495962.1	+	116724145,116724771,116731667,116739949,116740851,116755354	116724249,116724847,116731859,116740084,116741025,116755414	0.864865
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	55581806	55581818	55581806	-	RAMPAGE_only	2	2	9	0.439971	2.500000	chr13	55580558	55583635	LTR|ERV1|HERVH-int	-	chr13	55516751	55583779	MSTRG.14306.1	-	55516751,55522596,55581427	55516933,55522754,55583779	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	110440314	110440381	110440319	-	RAMPAGE_only	14	15	63	3.079797	5.038212	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.984127
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	24958787	24958789	24958787	+	RAMPAGE_only	12	17	25	1.222142	3.688722	chr15	24958722	24959017	SINE|Alu|AluJr4	-	chr15	24955686	24974434	MSTRG.17009.19	+	24955686,24959346,24967931,24974310	24956489,24962209,24968082,24974434	0.560000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	25115531	25115539	25115538	+	RAMPAGE_only	19	21	34	1.662113	3.060032	chr15	25115166	25115549	LTR|ERVL|MER54A	+	chr15	25116544	25120051	SNHG14|ENST00000626200.2	+	25116544,25118267,25119064	25117515,25118382,25120051	0.970588
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	113991907	113991941	113991926	-	High_confidence	149	150	483	23.611777	6.171873	chrX	113991687	113992070	LTR|ERVL|MLT2A1	-	chrX	113961356	113991963	MSTRG.57214.5	-	113961356,113991715	113963599,113991963	0.892340
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	167303337	167303372	167303371	-	High_confidence	163	164	280	13.687986	5.797069	chr5	167303270	167303678	LTR|ERV1|LTR7	-	chr5	167296233	167303372	AC091820.1|ENST00000523497.1	-	167296233,167297462,167303122	167296543,167297550,167303372	0.664286
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	179168226	179168276	179168275	-	RAMPAGE_only	42	64	278	13.590215	5.464853	chr4	179167323	179170117	LTR|ERV1|HERVH-int	-	chr4	179162730	179170261	MSTRG.40712.1	-	179162730	179170261	0.996403
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	125707417	125707418	125707417	-	High_confidence	2158	2226	2914	142.452830	6.394578	chr6	125707313	125707763	LTR|ERV1|LTR7	-	chr6	125666890	125707409	MSTRG.46655.1	-	125666890,125707165	125702308,125707409	0.889842
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	53446304	53446322	53446321	+	RAMPAGE_only	12	12	22	1.075485	3.879664	chr19	53446200	53446369	SINE|Alu|AluSz	-	chr19	53445184	53458260	ZNF761|ENST00000454407.5	+	53445184,53447145,53449511,53454649	53445275,53447283,53449638,53458260	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	41648258	41648307	41648258	-	RAMPAGE_only	26	27	93	4.546367	5.311074	chrX	41647625	41648694	LTR|ERVK|MER11C	+	chrX	41531183	41665847	CASK|ENST00000643043.1	-	41531183,41534705,41534892,41542690,41553718,41559778,41561558,41569667,41578339,41586906,41589514,41609903,41626603,41636577,41660438,41665276,41665736	41531209,41534786,41534973,41542806,41553915,41559847,41561644,41569746,41578528,41586987,41589592,41610025,41626703,41636661,41660561,41665452,41665847	0.924731
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	34588450	34588453	34588450	-	High_confidence	16	22	29	1.417684	4.004364	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.827586
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	39800271	39800305	39800293	-	High_confidence	71	72	353	17.256640	6.759188	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39374881	39800295	MSTRG.24066.4	-	39374881,39535457,39751328,39800068	39388527,39535615,39751360,39800295	0.541076
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	62206521	62207150	62206822	+	RAMPAGE_only	51	56	1047	51.183292	7.304988	chr1	62206563	62206907	LINE|L1|L1MEd	+	chr1	62194830	62212328	L1TD1|ENST00000498273.1	+	62194830,62196434,62206518,62209782	62194921,62196528,62207636,62212328	0.999045
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	154409563	154409592	154409591	+	RAMPAGE_only	6	6	13	0.635514	2.688722	chr5	154409601	154409687	LINE|L1|L1PREC2	+	chr5	154403776	154419033	GALNT10|ENST00000517958.1	+	154403776,154409540,154412888,154415782,154416813	154404216,154409762,154413005,154415932,154419033	0.923077
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	35090689	35090714	35090713	+	RAMPAGE_only	7	7	20	0.977713	3.326360	chr19	35090683	35090832	SINE|MIR|MIR	-	chr19	35106085	35113664	AC020907.1|ENST00000649940.1	+	35106085,35113346	35106836,35113664	0.850000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	55892972	55893051	55893050	+	High_confidence	7	9	50	2.444283	3.867248	chr18	55887412	55893439	LINE|L1|L1PA3	-	chr18	55893037	56023462	AC009271.1|ENST00000589440.1	+	55893037,56017727,56023401	55893442,56017779,56023462	0.880000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	2961970	2961985	2961974	-	High_confidence	4	4	17	0.831056	2.822182	chr6	2961899	2962022	SINE|Alu|AluJr	-	chr6	2948158	2962108	SERPINB6|ENST00000380524.5	-	2948158,2948913,2953043,2954591,2955523,2959167,2961893	2948699,2949069,2953186,2954709,2955670,2959342,2962108	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	122383160	122383190	122383160	+	RAMPAGE_only	9	9	28	1.368799	3.994680	chr5	122377544	122383563	LINE|L1|L1PA2	-	chr5	122391088	122464219	SNCAIP|NM_001308105.1	+	122391088,122403792,122422867,122431968,122440628,122444562,122449844,122450532,122463490	122391191,122403865,122423739,122432082,122440754,122444732,122449937,122451601,122464219	0.714286
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	81170402	81170431	81170430	-	High_confidence	4	4	16	0.782171	3.202820	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	101695844	101695882	101695881	+	High_confidence	37	37	135	6.599565	5.768974	chr11	101695062	101696030	LTR|ERVK|LTR5_Hs	+	chr11	101695897	101704014	MSTRG.9686.1	+	101695897,101701489,101703466	101696138,101701767,101704014	0.866667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	77088569	77088570	77088569	+	High_confidence	776	815	1058	51.721035	6.184661	chr2	77088246	77088674	LTR|ERV1|LTR7	+	chr2	77088579	77103742	MSTRG.28354.2	+	77088579,77090732,77093656	77088822,77090919,77103742	0.677694
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	976648	976687	976648	+	High_confidence	13	13	42	2.053198	2.816624	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976696	1159311	AP005328.1|ENST00000579835.5	+	976696,1061462,1133842,1137813,1159178	976895,1061535,1133894,1137864,1159311	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	24995184	24995190	24995184	+	RAMPAGE_only	16	20	33	1.613227	3.880565	chr15	24995035	24995326	SINE|Alu|AluSx4	+	chr15	24981993	25002404	MSTRG.17009.23	+	24981993,24998969,25000244,25001357	24998486,24999078,25000374,25002404	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	44912491	44912496	44912495	-	High_confidence	5	5	11	0.537742	3.095795	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.727273
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	166716409	166716471	166716470	+	High_confidence	582	592	944	46.148069	6.671069	chr4	166716124	166716575	LTR|ERV1|LTR7	+	chr4	166716287	166749087	MSTRG.40532.1	+	166716287,166725235,166727034	166716723,166725319,166749087	0.727754
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	94607647	94607670	94607669	+	RAMPAGE_only	21	24	49	2.395398	4.218547	chr10	94607542	94607719	DNA|hAT-Charlie|Charlie10	-	chr10	94596879	94613905	MSTRG.6740.17	+	94596879,94601527,94609267	94597111,94609008,94613905	0.959184
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	1879903	1879904	1879903	-	RAMPAGE_only	8	8	10	0.488857	2.721928	chr1	1879727	1879914	DNA|hAT-Charlie|Charlie1	-	chr1	1793244	1890401	GNB1|ENST00000434686.6	-	1793244,1804418,1806474,1815755,1817836,1825396,1839189,1839628,1890363	1793311,1804581,1806538,1815862,1817875,1825499,1839238,1839682,1890401	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	27350313	27350322	27350321	-	RAMPAGE_only	5	5	12	0.586628	2.688722	chr2	27350219	27350401	DNA|hAT-Charlie|MER5A	+	chr2	27325848	27356492	GTF3C2|ENST00000359541.6	-	27325848,27327176,27328036,27328467,27328843,27329120,27329378,27333654,27333973,27335597,27335916,27336197,27337243,27337480,27337925,27341947,27342825,27343307,27356086	27326893,27327284,27328189,27328596,27328931,27329282,27329523,27333784,27333999,27335706,27336028,27336425,27337342,27337558,27338020,27342233,27343147,27343578,27356492	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	68679867	68679894	68679867	+	High_confidence	6	6	12	0.586628	2.855389	chr2	68677861	68680074	LINE|L1|L1PA3	-	chr2	68679845	68787922	ARHGAP25|ENST00000481684.5	+	68679845,68710504,68757637,68775220,68782232,68787839	68680095,68710698,68757730,68775420,68782320,68787922	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	92441163	92441207	92441164	+	High_confidence	7	10	19	0.928828	3.511085	chr4	92441151	92441301	LTR|ERV1|HERVH-int	-	chr4	92440527	93774553	MSTRG.39531.5	+	92440527,92590130,93084994,93110747,93207403,93216737,93224613,93238370,93395606,93422770,93455661,93490638,93515215,93626268,93769209,93772075	92442310,92590286,93085279,93110953,93207457,93216911,93224775,93238490,93395708,93422968,93455974,93490777,93515411,93626435,93769450,93774553	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	3392846	3392863	3392847	+	RAMPAGE_only	11	15	27	1.319913	3.126215	chr11	3392805	3392946	LINE|L2|L2a	-	chr11	3383461	3412628	MSTRG.7631.7	+	3383461,3384166,3384898,3397116,3401758,3402612,3402914,3403592,3404853,3406498,3407621,3408685,3411292	3383546,3384284,3395939,3397406,3401867,3402729,3402956,3403652,3404963,3406715,3407697,3410973,3412628	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	82076525	82076526	82076525	-	RAMPAGE_only	7	8	8	0.391085	2.521641	chr17	82076254	82076887	LINE|L1|L1MEc	-	chr17	81511345	81523847	ACTG1|ENST00000575994.5	-	81511345,81511902,81512231,81523641	81511626,81512142,81512360,81523847	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	28719711	28719719	28719711	+	High_confidence	10	10	16	0.782171	3.323231	chr17	28719632	28719760	SINE|Alu|AluYh3	+	chr17	28719981	28724356	RPL23A|NM_000984.5	+	28719981,28720706,28722722,28723570,28723866	28720030,28720890,28722899,28723640,28724356	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	27475536	27475572	27475560	+	RAMPAGE_only	4	4	18	0.879942	3.101881	chr5	27472714	27477542	LTR|ERV1|MER61-int	+	chr5	27472291	27494318	MSTRG.41258.1	+	27472291,27475534	27472519,27494318	0.944444
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	28507733	28507734	28507733	+	RAMPAGE_only	8	8	9	0.439971	2.500000	chr1	28507600	28507904	SINE|Alu|AluSg	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	186247142	186247261	186247260	-	High_confidence	12	13	77	3.764196	4.871151	chr4	186244427	186247216	LTR|ERV1|HERVH-int	-	chr4	186241940	186247305	MSTRG.40841.2	-	186241940,186245315,186247070	186242329,186245478,186247305	0.675325
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	26046028	26046031	26046030	-	RAMPAGE_only	21	34	36	1.759884	3.939829	chr13	26045800	26046107	SINE|Alu|AluSx1	+	chr13	26044596	26051031	SHISA2|ENST00000319420.3	-	26044596,26050641	26047066,26051031	0.944444
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	2222989	2223006	2223005	-	RAMPAGE_only	8	10	17	0.831056	2.521782	chr4	2222623	2222987	LTR|ERVL|ERV3-16A3_I-int	-	chr4	2071917	2229231	POLN|ENST00000382865.5	-	2071917,2072967,2075451,2080957,2081632,2085612,2095850,2128112,2129178,2131232,2156787,2157857,2159154,2170678,2171097,2173954,2174690,2176265,2179307,2193203,2198523,2207986,2213046,2229098	2072299,2073029,2075519,2081036,2081743,2085744,2095933,2128227,2129256,2131290,2156853,2157911,2159211,2170774,2171181,2174019,2174751,2176334,2179465,2193316,2198717,2208487,2213126,2229231	0.823529
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	26428586	26428587	26428586	+	RAMPAGE_only	10	10	12	0.586628	3.084963	chr1	26428532	26428837	SINE|Alu|AluSx1	-	chr1	26410816	26429719	LIN28A|ENST00000254231.4	+	26410816,26411385,26425302,26426241,26429095	26410922,26411582,26425487,26428587,26429719	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	24983470	24983787	24983470	+	RAMPAGE_only	127	147	699	34.171080	6.374487	chr15	24983509	24983805	SINE|Alu|AluSx	+	chr15	24981993	25002404	MSTRG.17009.23	+	24981993,24998969,25000244,25001357	24998486,24999078,25000374,25002404	0.995708
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	36104620	36104633	36104628	+	High_confidence	21	25	83	4.057510	4.873520	chr21	36104267	36104752	LTR|ERV1|LTR10F	+	chr21	36104880	36109690	MSTRG.32730.1	+	36104880,36107581	36105330,36109690	0.939759
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	81154213	81154248	81154221	-	High_confidence	28	28	73	3.568654	5.336884	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.849315
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	66244231	66244269	66244231	+	High_confidence	357	382	698	34.122195	6.693875	chr2	66243888	66244336	LTR|ERV1|LTR7	+	chr2	66244206	66267154	MSTRG.27987.2	+	66244206,66246286,66250430	66244484,66246474,66267154	0.866762
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	81664342	81664349	81664342	+	RAMPAGE_only	15	25	41	2.004312	3.311769	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.975610
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	91623923	91623941	91623940	+	High_confidence	12	12	22	1.075485	2.867634	chr4	91623639	91624089	LTR|ERV1|LTR7	+	chr4	91623957	91629526	MSTRG.39524.2	+	91623957,91629237	91624237,91629526	0.772727
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	8794627	8794817	8794650	+	RAMPAGE_only	61	66	410	20.043123	6.036295	chr12	8794542	8796127	LTR|ERV1|LTR12C	+	chr12	8788273	8795789	AC092490.1|ENST00000514568.2	+	8788273,8794304	8788760,8795789	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	39013108	39013167	39013166	+	High_confidence	20	21	89	4.350824	4.592589	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.910112
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	112999768	112999779	112999778	-	High_confidence	5	5	11	0.537742	2.845351	chr9	112999325	112999997	LTR|ERVL|MER21C	-	chr9	112957742	112999091	ZNF883|ENST00000639709.1	-	112957742,112959125,112959349,112959792,112966649,112968821,112969339,112998120	112958036,112959171,112959451,112959903,112966740,112968941,112969380,112999091	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	109314933	109314958	109314957	-	High_confidence	5	5	11	0.537742	3.027169	chr3	109314780	109315092	SINE|Alu|AluSz6	+	chr3	109293819	109314765	MSTRG.36349.2	-	109293819,109300370,109304474,109308031,109309025,109309169,109312544,109314509,109314739	109294004,109300435,109304670,109308293,109309079,109309330,109312692,109314555,109314765	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	71454219	71454231	71454230	+	RAMPAGE_only	4	6	12	0.586628	3.084963	chrX	71454262	71454473	SINE|Alu|AluJb	+	chrX	71458272	71466504	TAF1|ENST00000482544.5	+	71458272,71459149,71459551,71460625,71466267	71458366,71459251,71459708,71460803,71466504	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	154924467	154924552	154924502	-	RAMPAGE_only	9	10	33	1.613227	4.280639	chr5	154924406	154924453	DNA|hAT-Charlie|MER30	-	chr5	154887415	154938209	GEMIN5|ENST00000285873.7	-	154887415,154889320,154891240,154892386,154896091,154898439,154899190,154901338,154902538,154903079,154904506,154905362,154907590,154911726,154912898,154916997,154917930,154919966,154921342,154924468,154925861,154927384,154928526,154931457,154932098,154935840,154937024,154937967	154888377,154889417,154891742,154892549,154896343,154898650,154899310,154901486,154902676,154903175,154904629,154905476,154907818,154911898,154913038,154917179,154918004,154920103,154921425,154924554,154926074,154927550,154928659,154931577,154932250,154936022,154937185,154938209	0.878788
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	42925774	42925826	42925774	-	High_confidence	18	29	140	6.843993	5.438681	chr21	42925506	42925876	LTR|ERV1|MER48	-	chr21	42916802	42925646	ERVH48-1|ENST00000447535.1	-	42916802,42925345	42919291,42925646	0.978571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	115318023	115318063	115318062	+	High_confidence	10	11	42	2.053198	4.188865	chr3	115312305	115318470	LINE|L1|L1PA3	-	chr3	115317986	115721482	MSTRG.36491.1	+	115317986,115676012,115720793	115318507,115676610,115721482	0.809524
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	98763632	98763633	98763632	+	RAMPAGE_only	7	7	9	0.439971	2.725481	chrX	98763422	98763766	LINE|L1|L1PA7	-	chrX	98573874	98865041	MSTRG.56913.6	+	98573874,98578985,98644527,98731530,98749923,98841940,98864610	98573932,98579074,98644574,98731584,98811131,98842001,98865041	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	19445577	19445606	19445605	+	RAMPAGE_only	10	12	17	0.831056	3.337175	chr9	19445297	19446244	LINE|L2|L2a	-	chr9	19408921	19452020	MSTRG.53241.1	+	19408921,19423861,19424699,19434946,19446280,19450219,19450449	19409192,19423976,19424841,19435084,19446418,19450355,19452020	0.588235
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	63618044	63618046	63618045	-	High_confidence	6	11	11	0.537742	3.095795	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.727273
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	64415637	64415655	64415654	+	RAMPAGE_only	2	3	7	0.342200	2.584963	chr14	64415628	64415688	DNA|hAT-Charlie|Charlie24	+	chr14	64419202	64426192	MTHFD1|ENST00000554057.5	+	64419202,64419813,64424803,64425729,64426018	64419250,64419925,64424931,64425827,64426192	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	125394142	125394215	125394213	-	High_confidence	146	176	343	16.767783	6.937730	chrX	125394109	125394560	LTR|ERV1|LTR7	-	chrX	125381842	125394203	MSTRG.57391.1	-	125381842,125393961	125389297,125394203	0.562682
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	112719054	112719075	112719054	-	RAMPAGE_only	7	7	14	0.684399	3.521641	chrX	112718609	112724627	LINE|L1|L1PA2	+	chrX	112630650	112680147	LHFPL1|NM_178175.3	-	112630650,112660626,112671008,112679828	112631601,112660725,112671404,112680147	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	98745033	98745035	98745033	+	RAMPAGE_only	4	6	9	0.439971	2.500000	chrX	98744590	98745138	LINE|L1|L1MA2	-	chrX	98743231	98847905	MSTRG.56913.9	+	98743231,98841940,98842319	98750000,98842277,98847905	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	17803257	17803363	17803362	-	RAMPAGE_only	41	41	108	5.279652	3.870336	chr4	17803030	17803324	SINE|Alu|AluSx	-	chr4	17800654	17810711	MSTRG.38600.1	-	17800654,17810446	17804771,17810711	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	123440450	123440493	123440492	+	RAMPAGE_only	10	14	32	1.564341	3.890320	chr7	123440375	123441560	LTR|ERVL|ERVL-E-int	-	chr7	123456628	123459856	AC073323.1|ENST00000419832.1	+	123456628,123457398,123459692	123456765,123457548,123459856	0.937500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	72899142	72899212	72899153	-	High_confidence	32	38	149	7.283964	5.398628	chr1	72898768	72900480	LINE|L1|L1PA2	+	chr1	72686875	72899147	MSTRG.1976.1	-	72686875,72749165,72850749,72898766,72899028	72689098,72749276,72850800,72898883,72899147	0.771812
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	134432406	134432445	134432406	-	High_confidence	2	2	13	0.635514	3.084963	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.769231
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	101696033	101696034	101696033	+	High_confidence	12	12	13	0.635514	3.084963	chr11	101696030	101699581	LTR|ERVK|HERVK-int	+	chr11	101695897	101704014	MSTRG.9686.1	+	101695897,101701489,101703466	101696138,101701767,101704014	0.923077
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	130692951	130693006	130692981	+	High_confidence	7	7	33	1.613227	4.657882	chr2	130693010	130693142	SINE|Alu|AluY	+	chr2	130693281	130696388	FAR2P3|ENST00000434289.1	+	130693281,130696341	130693796,130696388	0.757576
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	123236888	123236970	123236936	-	RAMPAGE_only	11	11	43	2.102084	4.279721	chr9	123236851	123237154	SINE|Alu|AluSz	+	chr9	123179006	123213908	STRBP|ENST00000479114.2	-	123179006,123184131,123212584,123213588	123179227,123184298,123212708,123213908	0.813953
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	27472283	27472304	27472283	+	High_confidence	1497	1577	3490	170.610974	7.718437	chr5	27472073	27472487	LTR|ERV1|MER61C	+	chr5	27472291	27496386	MSTRG.41258.2	+	27472291,27475534,27484582,27495948	27472519,27484562,27494335,27496386	0.639542
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	173532853	173532942	173532853	+	High_confidence	7	7	71	3.470882	5.005294	chr2	173527289	173533317	LINE|L1|L1PA3	-	chr2	173532829	173693243	MSTRG.29762.1	+	173532829,173692683	173533339,173693243	0.760563
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	26832766	26832893	26832778	-	High_confidence	41	55	113	5.524080	5.478897	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.982301
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	29647272	29647290	29647272	+	High_confidence	2	2	11	0.537742	3.277613	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.545455
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	54634698	54634720	54634719	-	RAMPAGE_only	7	7	12	0.586628	2.617492	chr3	54634483	54634934	LTR|ERV1|LTR7	-	chr3	54632121	54639857	MSTRG.35417.8	-	54632121,54637690,54639604	54634565,54637820,54639857	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	53831749	53831750	53831749	+	High_confidence	598	624	667	32.606739	5.427582	chr19	53831403	53831854	LTR|ERV1|LTR7	+	chr19	53831403	53837782	MSTRG.26570.1	+	53831403,53833874	53832002,53837782	0.560720
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	97215026	97215052	97215026	+	High_confidence	10	10	30	1.466570	4.280226	chr9	97214967	97216579	LTR|ERV1|HERVH-int	+	chr9	97214744	97220663	MSTRG.54562.2	+	97214744,97219583	97217380,97220663	0.966667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	54639635	54639691	54639690	-	High_confidence	71	73	105	5.132995	5.357912	chr3	54636818	54639750	LTR|ERV1|HERVH-int	-	chr3	54632121	54639857	MSTRG.35417.4	-	54632121,54633558,54634460	54632861,54633740,54639857	0.990476
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	30848235	30848277	30848252	-	High_confidence	29	31	124	6.061823	4.837812	chr6	30847787	30848423	LTR|ERVL|MER21C	-	chr6	30839525	30848159	LINC02570|ENST00000442852.1	-	30839525,30847036,30847967	30840019,30847149,30848159	0.846774
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	119279739	119279750	119279739	+	RAMPAGE_only	3	4	9	0.439971	3.169925	chr4	119274113	119280127	LINE|L1|L1PA2	-	chr4	119239639	119294638	USP53|ENST00000509769.5	+	119239639,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119266299,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119266333,119267482,119268420,119269837,119272034,119273708,119291261,119294638	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	33446606	33446610	33446609	+	High_confidence	608	677	1046	51.134407	5.903046	chr3	33446461	33447026	LTR|ERV1|LTR12C	+	chr3	33446586	33455868	MSTRG.34848.1	+	33446586,33453035	33447137,33455868	0.977055
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	232127402	232127423	232127402	+	RAMPAGE_only	7	7	16	0.782171	3.577820	chr1	232126971	232129220	LINE|L1|L1MB5	-	chr1	232118456	232150070	MSTRG.4642.2	+	232118456,232120627,232123487	232118713,232120729,232150070	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	39354023	39354051	39354038	+	High_confidence	3	3	11	0.537742	2.550341	chr19	39353999	39354088	DNA|hAT-Charlie|MER117	-	chr19	39354003	39370115	SAMD4B|ENST00000599712.1	+	39354003,39356688,39369654	39354066,39357089,39370115	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	116648874	116648917	116648885	-	RAMPAGE_only	8	8	59	2.884254	4.454086	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.983051
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147870109	147870140	147870109	+	High_confidence	2	2	8	0.391085	3.000000	chr5	147869835	147870286	LTR|ERV1|LTR7	-	chr5	147870591	147882191	MSTRG.43559.1	+	147870591,147872176,147881445,147882026	147871679,147872321,147881648,147882191	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	113948835	113948836	113948835	-	RAMPAGE_only	11	11	11	0.537742	3.095795	chr12	113948646	113948806	SINE|MIR|MIRb	-	chr12	113816741	113966306	RBM19|ENST00000545145.6	-	113816741,113823208,113844667,113858790,113914968,113918391,113920610,113924696,113927053,113937006,113939959,113942323,113945827,113946353,113947333,113948832,113950082,113952511,113955130,113957781,113959211,113959864,113960058,113962231,113966191	113818186,113823321,113844788,113858896,113915085,113918447,113920690,113924757,113927229,113937136,113940160,113942434,113945924,113946475,113947464,113949036,113950154,113952590,113955211,113958050,113959404,113959903,113960178,113962414,113966306	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	36641899	36641911	36641899	-	High_confidence	5	5	10	0.488857	2.947703	chr4	36641714	36642024	SINE|Alu|AluY	+	chr4	36496536	36641900	LINC02505|ENST00000510597.5	-	36496536,36498426,36582656,36615453,36641849	36497052,36498488,36582730,36615526,36641900	0.700000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	28507870	28507871	28507870	+	RAMPAGE_only	20	22	27	1.319913	3.299917	chr1	28507600	28507904	SINE|Alu|AluSg	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	212977187	212977223	212977222	+	RAMPAGE_only	34	41	98	4.790795	5.027680	chr1	212977200	212977341	SINE|MIR|MIR3	+	chr1	212951542	212992037	MSTRG.4296.11	+	212951542,212961165,212965721,212966270,212972579,212973954,212991550	212951818,212961254,212965778,212966345,212972961,212989176,212992037	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	53274971	53274972	53274971	+	RAMPAGE_only	8	9	10	0.488857	3.121928	chr12	53275020	53275197	SINE|Alu|AluSz	+	chr12	53268334	53293474	ESPL1|ENST00000552462.1	+	53268334,53268754,53269023,53270377,53270677,53272720,53274816,53276619,53277082,53277469,53277820,53279731,53281506,53282263,53283128,53283381,53284057,53285923,53287971,53288537,53289089,53289403,53290084,53290346,53290840,53291689,53291983,53292277,53292573,53292805,53293272	53268406,53268847,53270085,53270482,53270798,53272857,53275010,53276859,53277227,53277608,53277960,53279866,53281626,53282435,53283257,53283538,53284167,53286912,53288341,53288699,53289303,53289594,53290212,53290469,53290996,53291860,53292088,53292393,53292657,53292970,53293474	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	100417457	100417474	100417457	-	RAMPAGE_only	2	2	8	0.391085	2.750000	chr15	100417071	100423096	LINE|L1|L1PA2	+	chr15	100402510	100544271	CERS3|ENST00000538112.6	-	100402510,100455892,100469377,100472923,100476085,100479427,100479988,100484549,100490816,100501676,100521666,100528812,100544123	100402865,100456046,100469484,100473052,100476178,100479478,100480046,100484668,100490931,100501850,100521756,100529075,100544271	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	209301544	209301585	209301584	+	RAMPAGE_only	34	34	53	2.590940	3.831335	chr2	209299792	209302616	LTR|ERV1|HERVH-int	+	chr2	209299631	209324597	MSTRG.30701.2	+	209299631,209304476,209323399	209299938,209321795,209324597	0.905660
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	143043272	143043274	143043273	+	RAMPAGE_only	5	8	12	0.586628	2.845351	chr3	143043314	143043694	LINE|L2|L2b	+	chr3	143001622	143057653	U2SURP|ENST00000463563.6	+	143001622,143010814,143012221,143014310,143016256,143016841,143019968,143020598,143021349,143021472,143022496,143022852,143023974,143024483,143027148,143028339,143028482,143032783,143033270,143034887,143035981,143037178,143038107,143038893,143043116,143050938,143053675,143054942,143056311	143001673,143010859,143012353,143014409,143016371,143016975,143020036,143020693,143021385,143021555,143022662,143023064,143024018,143024548,143027253,143028406,143028646,143032946,143033350,143034975,143036104,143037335,143038203,143038960,143043276,143051049,143053794,143055119,143057653	0.916667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	97186258	97186260	97186258	-	RAMPAGE_only	14	17	23	1.124370	3.849224	chr9	97186025	97186320	SINE|Alu|AluJr4	+	chr9	97156569	97221235	ANKRD18CP|ENST00000354752.5	-	97156569,97160181,97161754,97162564,97170606,97172947,97178263,97179996,97185441,97187453,97191730,97194702,97200458,97204860,97211372,97221029	97156585,97160402,97161966,97162846,97170736,97173060,97178413,97180916,97185515,97187507,97191798,97194840,97200565,97205034,97211487,97221235	0.956522
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	67333405	67333406	67333405	+	RAMPAGE_only	7	7	11	0.537742	2.921928	chr2	67331916	67335853	LTR|ERV1|HERVH-int	+	chr2	67331761	67343461	MSTRG.28003.5	+	67331761,67333952,67337008	67332062,67334150,67343461	0.545455
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	44064306	44064307	44064306	-	RAMPAGE_only	4	5	6	0.293314	2.584963	chr17	44064289	44064371	SINE|MIR|MIR	-	chr17	44036166	44066659	LSM12|ENST00000585388.1	-	44036166,44036861,44037411,44040146,44063800,44066463	44036300,44037102,44037538,44040256,44063934,44066659	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	26965491	26965533	26965491	-	High_confidence	15	15	74	3.617539	3.923897	chr11	26965118	26971134	LINE|L1|L1PA2	+	chr11	26711339	26965583	MSTRG.8174.6	-	26711339,26712640,26965095	26711358,26712706,26965583	0.878378
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	12756355	12756397	12756355	+	RAMPAGE_only	3	3	12	0.586628	2.855389	chr20	12754276	12757279	LTR|ERV1|HERVH-int	+	chr20	12754178	12765768	MSTRG.31518.3	+	12754178,12760245	12754422,12765768	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	46087015	46087031	46087030	-	High_confidence	6	9	25	1.222142	3.605389	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.920000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	59328608	59328609	59328608	-	High_confidence	792	813	981	47.956838	6.117036	chr12	59328504	59328986	LTR|ERV1|LTR7	-	chr12	59317712	59328657	MSTRG.11956.1	-	59317712	59328657	0.994903
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrY	5941455	5941456	5941455	+	High_confidence	2504	2540	2634	128.764844	5.481082	chrY	5941110	5941560	LTR|ERV1|LTR7	+	chrY	5941455	5946801	MSTRG.57910.1	+	5941455	5946801	0.958618
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	65887614	65887615	65887614	-	High_confidence	7	7	7	0.342200	2.521641	chr11	65887463	65887575	LINE|L2|L2	-	chr11	65884934	65888436	FIBP|ENST00000532229.1	-	65884934,65885077,65885508,65887599,65887933,65888333	65884998,65885186,65885663,65887726,65888132,65888436	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	67571182	67571206	67571188	+	High_confidence	4	5	15	0.733285	3.506891	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	61918295	61918303	61918302	+	High_confidence	8	9	13	0.635514	3.238901	chr16	61918303	61919817	LINE|L1|L1HS	+	chr16	61918455	61919077	MSTRG.20215.1	+	61918455	61919077	0.769231
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	102671615	102671673	102671672	-	High_confidence	19	20	117	5.719623	5.047765	chr5	102671229	102677260	LINE|L1|L1PA2	+	chr5	102609155	102671559	LINC00491|ENST00000510145.1	-	102609155,102671226	102609766,102671559	0.803419
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	23134974	23134975	23134974	+	RAMPAGE_only	5	7	7	0.342200	2.807355	chr19	23134345	23135241	Retroposon|SVA|SVA_E	+	chr19	23763011	23842520	MSTRG.25586.3	+	23763011,23807825,23808718,23827069	23763134,23807939,23808814,23842520	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	60073753	60073764	60073763	-	RAMPAGE_only	6	8	12	0.586628	2.522055	chr17	60073534	60073713	SINE|MIR|MIR	-	chr17	60069808	60076185	HEATR6|ENST00000590587.1	-	60069808,60070705,60072214,60073163,60073745,60076129	60069848,60070807,60072329,60073279,60074159,60076185	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	21395386	21395416	21395396	-	High_confidence	42	47	132	6.452908	5.840142	chr12	21395009	21401039	LINE|L1|L1PA2	+	chr12	21318830	21395397	SLCO1A2|ENST00000421287.5	-	21318830,21334587,21394905	21318923,21334704,21395397	0.621212
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	94701671	94701735	94701722	+	High_confidence	8	8	21	1.026599	2.641121	chrX	94701137	94704174	LTR|ERV1|HERVH-int	-	chrX	94701586	94805625	MSTRG.56881.1	+	94701586,94746874,94803825	94702166,94746970,94805625	0.714286
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	39154540	39154566	39154565	-	High_confidence	12	21	30	1.466570	3.314409	chr3	39154504	39154649	LINE|L2|L2c	+	chr3	39142337	39154562	CSRNP1|ENST00000514182.1	-	39142337,39144136,39144996,39146477,39154496	39144044,39144451,39145256,39146722,39154562	0.933333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	26914558	26914578	26914561	-	RAMPAGE_only	3	5	12	0.586628	3.095795	chr12	26914520	26914587	LINE|RTE-BovB|MamRTE1	+	chr12	26905180	26917734	INTS13|ENST00000538155.5	-	26905180,26906301,26911177,26913456,26913973,26916001,26917351,26917643	26905536,26906437,26911317,26913687,26914128,26916180,26917441,26917734	0.916667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	86666198	86666200	86666198	+	High_confidence	90	112	138	6.746222	5.311224	chr5	86666013	86666391	LTR|ERVL-MaLR|MLT1I	+	chr5	86666186	86666550	MSTRG.42204.1	+	86666186	86666550	0.536232
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	177149759	177149762	177149761	+	RAMPAGE_only	4	10	11	0.537742	3.095795	chr5	177149547	177149886	DNA|hAT-Charlie|MER1B	-	chr5	177146287	177158354	MSTRG.44015.1	+	177146287,177151519	177151234,177158354	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	125707299	125707315	125707301	-	High_confidence	6	11	28	1.368799	4.235926	chr6	125704049	125707311	LTR|ERV1|HERVH-int	-	chr6	125681551	125707408	MSTRG.46655.2	-	125681551,125694166,125707165	125689646,125694398,125707408	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	171327057	171327094	171327078	-	High_confidence	25	25	95	4.644138	5.237424	chr2	171327063	171327159	LINE|L2|L2c	+	chr2	171323900	171327065	METTL8|ENST00000463392.5	-	171323900,171325840,171326041,171327003	171324362,171325906,171326148,171327065	0.863158
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	3195772	3195773	3195772	-	High_confidence	30	30	44	2.150969	4.661263	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.954545
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	131308533	131308571	131308533	+	High_confidence	1451	1475	2559	125.098419	6.522878	chr8	131308261	131308638	LTR|ERV1|LTR7	+	chr8	131308544	131317583	AC104257.1|ENST00000519695.5	+	131308544,131310552,131312555,131315759,131317333	131308671,131310712,131312748,131315883,131317583	0.967565
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	53492826	53492827	53492826	-	RAMPAGE_only	11	14	14	0.684399	3.182006	chr10	53492722	53493172	LTR|ERV1|LTR7	-	chr10	53484409	53504351	MSTRG.5857.2	-	53484409,53504161	53487881,53504351	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	15096678	15096679	15096678	-	RAMPAGE_only	11	11	11	0.537742	2.594907	chr3	15096663	15096757	LINE|L2|L2c	-	chr3	15084734	15099133	RBSN|ENST00000441057.5	-	15084734,15084999,15085860,15090398,15091338,15095972,15096534,15098118,15099034	15084896,15085045,15085961,15090539,15091493,15096288,15096710,15098274,15099133	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	55267621	55267623	55267622	-	High_confidence	6	11	17	0.831056	3.577820	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.823529
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	175594147	175594182	175594150	+	High_confidence	18	18	72	3.519768	4.193188	chr2	175588546	175594563	LINE|L1|L1PA2	-	chr2	175594103	175595849	MSTRG.29807.1	+	175594103	175595849	0.972222
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	97131013	97131034	97131033	-	RAMPAGE_only	6	6	16	0.782171	3.577820	chr9	97129737	97131289	Retroposon|SVA|SVA_A	-	chr9	97104717	97135025	MSTRG.54542.4	-	97104717,97122357,97130642	97122265,97123143,97135025	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	90637840	90637841	90637840	+	RAMPAGE_only	10	11	14	0.684399	2.549523	chr5	90637833	90637939	LINE|CR1|X6A_LINE	-	chr5	90640717	90708909	ADGRV1|ENST00000640403.1	+	90640717,90642635,90642855,90643802,90644705,90645967,90647497,90651603,90652345,90653220,90657904,90672545,90674053,90675242,90676079,90679548,90681314,90683585,90685779,90689860,90690796,90692604,90693889,90696936,90703664,90704388,90705399,90706230,90708815	90640868,90642762,90643041,90643983,90644869,90646091,90647764,90651730,90652563,90653952,90658278,90672722,90674234,90675445,90676209,90679629,90681454,90684195,90685995,90690076,90691041,90692786,90694701,90697146,90703795,90704488,90705579,90706394,90708909	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	27475635	27475646	27475645	+	RAMPAGE_only	5	6	13	0.635514	3.251629	chr5	27472714	27477542	LTR|ERV1|MER61-int	+	chr5	27472291	27494318	MSTRG.41258.1	+	27472291,27475534	27472519,27494318	0.923077
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	196786510	196786525	196786510	+	High_confidence	2	2	9	0.439971	2.725481	chr1	196780803	196786955	LINE|L1|L1PA3	-	chr1	196786557	196789099	MSTRG.3942.6	+	196786557,196788215,196788744	196786610,196788398,196789099	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	46736149	46736150	46736149	-	High_confidence	8	8	8	0.391085	2.500000	chr19	46735991	46736300	SINE|Alu|AluSz	+	chr19	46728686	46736349	STRN4|ENST00000602397.5	-	46728686,46730731,46733038,46736149	46728777,46730873,46733236,46736349	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	26298297	26298303	26298302	+	RAMPAGE_only	6	6	11	0.537742	2.732159	chr2	26297920	26298397	LTR|ERV1|LTR15	+	chr2	26303784	26304408	MSTRG.27227.1	+	26303784	26304408	0.818182
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	104116254	104116308	104116304	+	RAMPAGE_only	5	5	22	1.075485	3.975418	chr9	104116275	104116318	DNA|hAT-Charlie|MER5A	+	chr9	104094563	104139651	SMC2|ENST00000374787.7	+	104094563,104095323,104096147,104098445,104099643,104100092,104100388,104101959,104102423,104111580,104113315,104113963,104114690,104116199,104118170,104120026,104123107,104124911,104126640,104127285,104129644,104132008,104134414,104138017,104139138	104094838,104095552,104096297,104098568,104099682,104100203,104100433,104102193,104102573,104111814,104113475,104114081,104114829,104116319,104118375,104120162,104123232,104125105,104126784,104127480,104129845,104132125,104134575,104138165,104139651	0.954545
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	34860575	34860634	34860575	-	High_confidence	14	14	61	2.982026	4.291993	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860576	MSTRG.25729.1	-	34849277,34860173	34849549,34860576	0.672131
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	39399178	39399180	39399178	+	RAMPAGE_only	18	30	35	1.710998	3.819245	chr19	39399019	39399251	LTR|ERVL|MLT2C1	-	chr19	39391322	39400561	MED29|ENST00000615911.4	+	39391322,39392463,39393552,39397456	39391638,39392522,39393637,39400561	0.942857
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	46243291	46243313	46243293	-	RAMPAGE_only	5	11	23	1.124370	3.481715	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.956522
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	238486001	238486009	238486007	-	High_confidence	6	9	22	1.075485	2.870951	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480440	238486023	LINC01139|ENST00000649681.1	-	238480440	238486023	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	152683289	152683326	152683289	+	RAMPAGE_only	39	41	96	4.693024	4.802599	chr6	152682944	152683394	LTR|ERV1|LTR7	+	chr6	152697894	152724582	MYCT1|NM_025107.2	+	152697894,152721741	152698098,152724582	0.770833
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	87039786	87039798	87039797	-	High_confidence	3	4	8	0.391085	3.000000	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	1655409	1655449	1655410	-	RAMPAGE_only	57	68	100	4.888567	5.737564	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635586	1657272	MSTRG.141.2	-	1635586,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652468,1655368,1657255	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657272	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	174874417	174874439	174874418	+	High_confidence	792	941	1909	93.322736	7.710731	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.746464
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	84150412	84150434	84150433	-	RAMPAGE_only	8	8	26	1.271027	4.001629	chr7	84150229	84151670	LINE|L1|L1PA3	+	chr7	83955776	84194901	SEMA3A|ENST00000265362.8	-	83955776,83963204,83977131,83981320,83985435,84001954,84005338,84007352,84011021,84011182,84014208,84046323,84060464,84110469,84129122,84134793,84194474	83961826,83963347,83977196,83981478,83985477,84002046,84005558,84007497,84011091,84011297,84014351,84046443,84060558,84110589,84129185,84134951,84194901	0.730769
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	182030747	182030774	182030773	+	High_confidence	33	33	74	3.617539	4.995394	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.918919
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	84299223	84299244	84299223	-	High_confidence	6	6	10	0.488857	2.503258	chr4	84298780	84304810	LINE|L1|L1PA2	+	chr4	83967986	84299231	MSTRG.39353.2	-	83967986,84012054,84148046,84149218,84243110,84284205,84286668,84293219,84299123	83970110,84012119,84148130,84149256,84243216,84284326,84286827,84293409,84299231	0.700000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	212792351	212792381	212792380	-	High_confidence	4	5	12	0.586628	2.913977	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.916667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	89958341	89958344	89958341	+	High_confidence	20	20	32	1.564341	4.438067	chr16	89958222	89958381	LTR|ERVL-MaLR|MLT1K	-	chr16	89958350	89959365	DEF8|ENST00000562044.1	+	89958350,89959013	89958533,89959365	0.656250
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	174595993	174596004	174596003	+	RAMPAGE_only	10	10	17	0.831056	3.410417	chr1	174590323	174596379	LINE|L1|L1HS	-	chr1	174637377	174705750	RABGAP1L|ENST00000474375.6	+	174637377,174683521,174699524,174702112,174705200	174637488,174683596,174699650,174702256,174705750	0.588235
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	84690064	84690073	84690064	-	High_confidence	2	2	7	0.342200	2.584963	chr12	84689582	84690216	LTR|ERV1|LTR9D	-	chr12	84665336	84689736	MSTRG.12476.1	-	84665336,84672722,84689612	84666619,84672913,84689736	0.571429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	32793536	32793592	32793568	+	RAMPAGE_only	6	6	47	2.297626	5.072369	chr20	32793485	32793596	DNA|TcMar-Tc2|Kanga11a	+	chr20	32779851	32809356	DNMT3B|NM_175850.2	+	32779851,32780317,32781352,32784757,32786501,32787229,32788853,32791600,32792625,32795408,32795649,32796789,32797186,32798459,32799243,32800152,32800834,32801277,32802384,32805337,32806208,32807761	32780145,32780465,32781414,32784859,32786627,32787451,32789012,32791708,32792770,32795534,32795694,32796869,32797299,32798643,32799328,32800298,32800925,32801426,32802470,32805407,32806327,32809356	0.744681
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	51936185	51936203	51936202	-	RAMPAGE_only	26	26	54	2.639826	3.464452	chr15	51935784	51936413	LTR|ERVL|LTR50	-	chr15	51919072	51930627	AC090971.3|ENST00000557871.1	-	51919072,51921783,51922721,51924039,51925745,51926780,51928206,51929333,51930530	51919145,51921873,51922908,51924177,51925881,51926870,51928291,51929478,51930627	0.685185
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	47172289	47172315	47172314	-	High_confidence	8	17	24	1.173256	3.938722	chr11	47172030	47172274	SINE|MIR|MIRb	-	chr11	47166267	47171557	ARFGAP2|ENST00000527776.5	-	47166267,47166505,47166759,47167908,47168122,47171452	47166386,47166599,47166886,47168043,47168251,47171557	0.958333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	32953927	32954051	32953994	+	RAMPAGE_only	10	10	60	2.933140	4.819439	chr11	32953932	32953995	LINE|CR1|L3	-	chr11	32957805	32969068	QSER1|ENST00000528034.1	+	32957805,32969045	32958086,32969068	0.550000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	50226714	50226747	50226714	+	High_confidence	26	26	76	3.715311	4.655961	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147946902	147946958	147946957	+	High_confidence	14	14	44	2.150969	4.023948	chr5	147941118	147947133	LINE|L1|L1PA3	-	chr5	147946607	147963901	MSTRG.43580.1	+	147946607,147948791,147963709	147947171,147948905,147963901	0.840909
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	62758108	62758113	62758112	-	High_confidence	4	4	8	0.391085	2.750000	chr11	62757736	62758341	LTR|ERVL|MER21B	-	chr11	62750962	62758050	MSTRG.8665.4	-	62750962,62753963,62757885	62753715,62754519,62758050	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	19445685	19445688	19445687	+	RAMPAGE_only	11	14	18	0.879942	3.572431	chr9	19445297	19446244	LINE|L2|L2a	-	chr9	19408921	19452020	MSTRG.53241.1	+	19408921,19423861,19424699,19434946,19446280,19450219,19450449	19409192,19423976,19424841,19435084,19446418,19450355,19452020	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	210094490	210094591	210094490	+	RAMPAGE_only	4	4	21	1.026599	3.748995	chr1	210094489	210094534	DNA|hAT-Ac|OldhAT1	+	chr1	210021045	210162967	SYT14|ENST00000534859.2	+	210021045,210094321,210100011,210155720,210159399,210160728	210021254,210094593,210100461,210155910,210159477,210162967	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	75324405	75324455	75324416	-	High_confidence	4	4	22	1.075485	3.784184	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.772727
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	14708111	14708156	14708111	-	RAMPAGE_only	3	3	17	0.831056	2.952820	chr12	14707186	14710156	LTR|ERV1|HERVH-int	-	chr12	14697151	14710628	MSTRG.10904.1	-	14697151	14710628	0.941176
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	78998272	78998352	78998272	-	High_confidence	7	7	39	1.906541	4.682587	chr6	78998067	78998230	LINE|L1|L1ME4a	-	chr6	78935866	78997903	MSTRG.45773.1	-	78935866,78945299,78946000,78946710,78947622,78954813,78955231,78955612,78958474,78961689,78963096,78965702,78965944,78969834,78970048,78970780,78978591,78982885,78985351,78988208,78990867,78997413	78941330,78945497,78946260,78946874,78947775,78954963,78955282,78955682,78958600,78961810,78963252,78965764,78966056,78969917,78970173,78970888,78978711,78983117,78985428,78988349,78990982,78997903	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	2801550	2801573	2801550	+	RAMPAGE_only	4	4	12	0.586628	2.663533	chrX	2801183	2801699	LTR|ERV1|LTR9	-	chrX	2752051	2816500	XG|NM_175569.2	+	2752051,2770549,2774715,2782065,2789643,2794534,2797309,2808184,2811335,2814363	2752335,2770591,2774739,2782128,2789706,2794603,2797360,2808220,2811452,2816500	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	40271336	40271423	40271419	+	RAMPAGE_only	14	14	101	4.937452	5.008319	chr20	40269505	40272453	LTR|ERV1|HERVH-int	+	chr20	40269405	40274720	MSTRG.32030.4	+	40269405,40274362	40271601,40274720	0.544554
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	75788202	75788221	75788202	-	RAMPAGE_only	22	22	63	3.079797	5.183641	chr7	75788163	75788562	LTR|ERV1|LTR7	+	chr7	75769523	75789746	CCL26|NM_006072.4	-	75769523,75771888,75772103,75789716	75769789,75772003,75772254,75789746	0.920635
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147872425	147872459	147872425	+	High_confidence	22	22	50	2.444283	4.285742	chr5	147871298	147874075	LTR|ERV1|HERVH-int	-	chr5	147872017	147882191	SCGB3A2|ENST00000514688.1	+	147872017,147881445,147882026	147872321,147881648,147882191	0.840000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	79045181	79045222	79045181	+	High_confidence	3	3	17	0.831056	3.337175	chr12	79039621	79045645	LINE|L1|L1PA2	-	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.705882
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	106981059	106981066	106981059	-	High_confidence	3	5	8	0.391085	2.500000	chr5	106979354	106981781	LTR|ERV1|HERVH-int	+	chr5	106815204	106980869	LINC01950|ENST00000505997.1	-	106815204,106844060,106980763	106815546,106844214,106980869	0.625000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	114284519	114284520	114284519	+	RAMPAGE_only	6	6	8	0.391085	2.807355	chr8	114282148	114285388	LTR|ERV1|HERVH-int	+	chr8	114282066	114308136	MSTRG.52395.1	+	114282066,114284218,114295465,114304413	114282294,114284514,114302915,114308136	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	26298392	26298512	26298400	+	RAMPAGE_only	35	35	232	11.341474	5.583149	chr2	26298403	26299683	LTR|ERV1|HERV15-int	+	chr2	26303784	26304408	MSTRG.27227.1	+	26303784	26304408	0.780172
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	24919641	24919689	24919672	+	High_confidence	28	29	125	6.110708	6.038997	chr15	24919446	24919852	LTR|ERV1|MER31A	-	chr15	24919694	24974434	MSTRG.17009.7	+	24919694,24920010,24920472,24921156,24962113,24967931,24974310	24919719,24920124,24920547,24921255,24962209,24968082,24974434	0.624000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	131510308	131510311	131510308	-	High_confidence	8	10	23	1.124370	2.838910	chr7	131510213	131510511	SINE|Alu|AluSx3	+	chr7	131509068	131510898	PODXL|ENST00000482581.1	-	131509068,131510827	131509585,131510898	0.826087
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	49396144	49396219	49396144	-	High_confidence	9	9	35	1.710998	4.436007	chr15	49395983	49402014	LINE|L1|L1PA2	+	chr15	49326961	49396442	FAM227B|ENST00000559573.3	-	49326961,49331779,49371301,49395974,49396243	49328675,49331849,49371399,49396097,49396442	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	54638188	54638196	54638188	-	RAMPAGE_only	4	4	9	0.439971	2.500000	chr3	54636818	54639750	LTR|ERV1|HERVH-int	-	chr3	54632121	54639857	ESRG|ENST00000583516.1	-	54632121,54633558,54634460,54637690	54632807,54633740,54634565,54639857	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	45825345	45825390	45825389	-	RAMPAGE_only	2	2	9	0.439971	2.500000	chr20	45825287	45825591	SINE|Alu|AluSx	-	chr20	45823213	45827314	TNNC2|NM_003279.2	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827314	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	188153195	188153225	188153195	+	High_confidence	9	9	27	1.319913	3.143414	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.962963
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	134613043	134613097	134613096	-	High_confidence	28	28	177	8.652763	5.167867	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.734463
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	27367612	27367613	27367612	-	RAMPAGE_only	17	17	20	0.977713	3.039354	chr6	27367435	27367797	LTR|ERVL-MaLR|MSTA	-	chr6	27357822	27371525	ZNF204P|NR_002722.2	-	27357822,27363178,27367516,27370135	27360221,27363302,27367612,27371525	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	209301657	209301662	209301661	+	RAMPAGE_only	8	8	14	0.684399	3.039149	chr2	209299792	209302616	LTR|ERV1|HERVH-int	+	chr2	209299631	209325398	MSTRG.30701.1	+	209299631,209305114,209323399	209299938,209321795,209325398	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	75278547	75278574	75278573	-	High_confidence	9	9	16	0.782171	3.327820	chr8	75278367	75284402	LINE|L1|L1PA4	+	chr8	75223768	75278497	CASC9|ENST00000521147.1	-	75223768,75278356	75224358,75278497	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	75217174	75217178	75217177	-	High_confidence	17	17	28	1.368799	4.103910	chr8	75217075	75217474	LTR|ERV1|LTR7	-	chr8	75210288	75217216	MSTRG.51692.1	-	75210288,75214977	75214653,75217216	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	40364190	40364194	40364190	-	RAMPAGE_only	6	7	12	0.586628	2.732159	chr6	40362782	40364444	LINE|L1|L1MEc	+	chr6	40358743	40369474	AL139275.1|ENST00000447315.1	-	40358743,40369388	40359481,40369474	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	75535319	75535321	75535319	-	RAMPAGE_only	20	30	35	1.710998	4.373796	chr7	75535246	75535344	SINE|Alu|FRAM	-	chr7	75533299	75639271	MSTRG.48867.1	-	75533299,75539322,75541918,75542850,75544694,75545087,75546938,75547754,75548890,75553452,75554112,75554439,75555415,75556025,75556709,75557653,75558166,75559731,75561328,75562072,75562934,75563187,75568198,75573760,75581236,75582074,75586752,75592055,75592371,75599183,75639050	75538224,75539431,75541980,75542974,75544800,75545188,75547032,75547813,75549001,75553589,75554220,75554526,75555551,75556169,75556811,75557770,75558255,75559915,75561401,75562170,75563075,75563263,75568256,75573901,75581298,75582151,75586833,75592112,75592514,75599247,75639271	0.971429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	65577190	65577306	65577190	+	RAMPAGE_only	45	46	223	10.901503	5.573238	chr15	65577153	65577426	SINE|Alu|AluJr	+	chr15	65530488	65578355	HACD3|NM_016395.2	+	65530488,65551675,65554886,65556738,65558679,65562773,65564214,65570090,65571547,65572234,65576302	65530718,65551718,65554960,65556903,65558731,65562884,65564342,65570203,65571654,65572366,65578355	0.995516
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	18664343	18664360	18664359	-	RAMPAGE_only	7	7	16	0.782171	3.250000	chr5	18663591	18664669	LINE|L1|L1PA16	+	chr5	18649608	18674250	MSTRG.41183.6	-	18649608,18664323,18672041,18674004	18658539,18664434,18672143,18674250	0.812500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	48258945	48258978	48258945	-	RAMPAGE_only	8	9	23	1.124370	3.499228	chr14	48257705	48260538	LTR|ERV1|HERVH-int	-	chr14	48224573	48260637	MSTRG.15605.6	-	48224573,48229021,48235430,48258584,48260392	48228993,48234226,48235618,48259013,48260637	0.913043
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	12754078	12754109	12754108	+	High_confidence	18	18	28	1.368799	3.770942	chr20	12753819	12754274	LTR|ERV1|LTR7	+	chr20	12754174	12763001	MSTRG.31518.2	+	12754174,12756137,12760245	12754422,12756425,12763001	0.892857
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	53243384	53243386	53243384	-	RAMPAGE_only	14	19	22	1.075485	2.867634	chrX	53243125	53243344	SINE|MIR|MIRb	-	chrX	53231061	53241861	IQSEC2|ENST00000640005.1	-	53231061,53236321,53238144,53239194,53241783	53231870,53236495,53238306,53239294,53241861	0.954545
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	67636931	67636973	67636931	+	RAMPAGE_only	4	5	15	0.733285	3.324863	chr15	67636731	67637312	LTR|ERVL|MLT2A2	+	chr15	67640552	67807113	MAP2K5|ENST00000340972.8	+	67640552,67641444,67642416,67646230,67646387,67658552,67664596,67692478,67693517,67703336,67727915,67748230,67748568,67769601,67772706,67806645	67640623,67641658,67642497,67646299,67646469,67658614,67664645,67692552,67693568,67703408,67727945,67748257,67748601,67769663,67772752,67807113	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	1721637	1721638	1721637	-	High_confidence	10	10	10	0.488857	2.646439	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrY	12686579	12686580	12686579	+	RAMPAGE_only	14	14	20	0.977713	2.965584	chrY	12685409	12686624	LTR|ERV1|MER4-int	+	chrY	12701230	12860839	USP9Y|ENST00000338981.7	+	12701230,12708633,12709387,12720588,12722107,12725112,12726574,12735611,12735997,12736410,12738156,12739524,12757191,12758505,12760483,12771067,12773582,12775470,12776648,12778018,12778605,12779525,12786202,12786521,12790406,12791498,12793031,12810178,12810671,12811634,12812829,12816123,12818419,12833687,12837910,12839863,12841009,12842239,12843063,12846332,12846932,12847238,12856339,12856632,12857565,12859278	12702055,12708693,12709543,12720737,12722187,12725225,12726793,12735727,12736249,12736549,12738309,12739629,12757398,12758642,12760617,12771155,12773925,12775566,12776860,12778259,12778755,12779646,12786333,12786800,12790532,12791624,12793201,12810287,12810818,12811781,12813052,12816344,12818610,12833861,12838052,12840614,12841133,12842465,12843193,12846518,12847153,12847327,12856496,12856845,12857661,12860839	0.950000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	69423288	69423315	69423314	+	High_confidence	4	4	14	0.684399	3.521641	chr15	69423345	69423466	SINE|MIR|MIRb	+	chr15	69422908	69436259	KIF23|ENST00000559283.1	+	69422908,69426069,69426335,69429110,69435482,69435651,69436148	69423329,69426182,69426457,69429213,69435562,69435782,69436259	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	84279967	84279968	84279967	+	High_confidence	28	29	38	1.857655	4.465946	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279979	84294659	LINC00858|ENST00000415469.5	+	84279979,84288223,84288593,84288974,84291406,84293245	84280065,84288420,84288780,84289044,84292137,84294659	0.710526
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	92103439	92103475	92103474	+	RAMPAGE_only	4	4	17	0.831056	3.572469	chrX	92102573	92105434	LTR|ERV1|HERVH-int	-	chrX	91835504	92619076	PCDH11X|ENST00000361655.6	+	91835504,91876780,92201374,92387734,92618263	91836044,91879273,92201455,92387933,92619076	0.588235
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	33710786	33710787	33710786	-	High_confidence	8	8	8	0.391085	2.750000	chr6	33709833	33710827	LINE|L2|L2a	+	chr6	33694292	33710773	MSTRG.45013.1	-	33694292,33700443,33701345,33710694	33697750,33700513,33701420,33710773	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	88052749	88052776	88052749	-	High_confidence	3	3	11	0.537742	3.277613	chr5	88052330	88058345	LINE|L1|L1PA2	+	chr5	87866931	88052794	MSTRG.42298.1	-	87866931,88047588,88052285	87867876,88047694,88052794	0.818182
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	131902073	131902090	131902078	+	High_confidence	6	6	20	0.977713	3.642150	chr6	131902005	131905101	LTR|ERV1|HERVH-int	+	chr6	131901963	131920565	MSTRG.46783.3	+	131901963,131903946,131910784	131902151,131904234,131920565	0.700000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	42870842	42870865	42870854	-	RAMPAGE_only	47	63	143	6.990650	4.817525	chr13	42869731	42872703	LTR|ERV1|HERVH-int	-	chr13	42836602	42872802	MSTRG.13907.2	-	42836602,42842798,42870600	42842551,42868464,42872802	0.552448
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	81247826	81247857	81247826	+	RAMPAGE_only	4	4	11	0.537742	2.521928	chr1	81245735	81248844	LTR|ERV1|HERVH-int	+	chr1	81245572	81254912	MSTRG.2127.1	+	81245572,81247702,81250807	81245881,81247990,81254912	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	48270080	48270081	48270080	+	High_confidence	15	15	17	0.831056	3.625000	chr19	48269716	48270187	LTR|ERV1|LTR7C	+	chr19	48270098	48287608	ZNF114|NM_153608.2	+	48270098,48271244,48271726,48279730,48282370,48285760	48270219,48271449,48271828,48279808,48282497,48287608	0.764706
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	65235003	65235004	65235003	-	High_confidence	2283	2319	2781	135.951037	7.004675	chr16	65234899	65235349	LTR|ERV1|LTR7	-	chr16	65229571	65235034	MSTRG.20251.5	-	65229571,65233014	65230205,65235034	0.951456
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	77593001	77593028	77593027	-	High_confidence	12	12	35	1.710998	4.343289	chr2	77592831	77598845	LINE|L1|L1PA3	+	chr2	77511623	77593319	MSTRG.28310.4	-	77511623,77521667,77552546,77592814	77519864,77521818,77552656,77593319	0.571429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	72728236	72728244	72728236	+	RAMPAGE_only	9	11	17	0.831056	3.577820	chr9	72728016	72728549	LTR|ERV1|MER34A1	-	chr9	72628019	72836061	TMC1|ENST00000646619.1	+	72628019,72688708,72694542,72740118,72742443,72751849,72754785,72772412,72788338,72789122,72791885,72792190,72805381,72816142,72820841,72826868,72830450,72835950	72628063,72688756,72694714,72740209,72742525,72751956,72754884,72772555,72788483,72789317,72792065,72792352,72805510,72816210,72821081,72826994,72830529,72836061	0.588235
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	59202437	59202446	59202437	+	RAMPAGE_only	10	15	28	1.368799	4.110577	chr17	59202290	59202580	SINE|Alu|AluJo	+	chr17	59155498	59206709	PRR11|NM_018304.3	+	59155498,59169747,59185053,59185439,59193491,59194756,59195330,59197543,59197692,59201562	59155805,59169880,59185204,59185562,59193734,59194855,59195443,59197603,59197789,59206709	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	89479889	89479890	89479889	-	High_confidence	50	50	50	2.444283	4.268438	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89362238	89479890	SEMA4D|ENST00000537934.5	-	89362238,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89418362,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89418437,89455953,89479890	0.920000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	131676834	131676835	131676834	-	RAMPAGE_only	7	7	10	0.488857	2.947703	chr9	131676817	131677003	DNA|hAT-Charlie|MER5A	+	chr9	131576777	131709721	RAPGEF1|ENST00000372190.7	-	131576777,131580262,131582604,131584310,131584517,131587735,131587941,131588800,131589885,131592098,131596297,131598198,131602060,131621795,131625921,131627912,131628548,131629101,131630235,131638634,131643238,131650128,131650809,131709619	131579647,131580391,131582702,131584412,131584596,131587830,131588026,131588986,131589978,131592183,131596373,131598310,131602149,131621998,131626422,131628096,131628672,131629254,131630324,131638791,131643417,131650242,131650949,131709721	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	133682331	133682334	133682331	+	High_confidence	7	7	17	0.831056	2.521782	chr6	133682310	133682614	SINE|Alu|AluSq2	-	chr6	133682336	133682812	MSTRG.46825.1	+	133682336	133682812	0.882353
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	42774724	42774737	42774736	+	High_confidence	8	8	15	0.733285	3.093069	chr19	42769102	42775111	LINE|L1|L1PA3	-	chr19	42774940	42775262	MSTRG.26064.1	+	42774940	42775262	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	179465287	179465314	179465287	-	High_confidence	2	2	13	0.635514	2.918296	chr4	179465179	179465371	SINE|MIR|MIR	-	chr4	179389133	179465305	AC020551.1|ENST00000512036.1	-	179389133,179390029,179465194	179389501,179390089,179465305	0.538462
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	55002118	55002181	55002180	-	RAMPAGE_only	5	7	30	1.466570	3.878451	chr14	55002086	55002164	LINE|CR1|L3	-	chr14	54938949	55027077	WDHD1|ENST00000360586.7	-	54938949,54944331,54955560,54957033,54957591,54962497,54962737,54962951,54966474,54967279,54981539,54984722,54987145,54989027,54991212,54995602,55000502,55000885,55002092,55007279,55008315,55008607,55010308,55013484,55026710,55027027	54941690,54944470,54955694,54957204,54957635,54962551,54962853,54963172,54966606,54967394,54981696,54984860,54987387,54989212,54991400,54995813,55000644,55000992,55002185,55007375,55008366,55008719,55010460,55013596,55026803,55027077	0.966667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	103742984	103743031	103743030	+	High_confidence	10	10	22	1.075485	3.458525	chrX	103742966	103743078	SINE|MIR|MIR	-	chrX	103742566	103792619	MSTRG.57038.2	+	103742566,103742774,103746874,103750685,103760530,103770823,103776852,103785581,103786464,103787797,103788436,103789332,103790526	103742742,103743107,103746922,103759452,103760627,103774368,103776999,103785768,103786726,103787966,103788510,103789398,103792619	0.545455
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	8788629	8788751	8788632	+	High_confidence	52	54	201	9.826019	5.552345	chr12	8788668	8793938	LTR|ERV1|HERV9NC-int	+	chr12	8788273	8795789	AC092490.1|ENST00000514568.2	+	8788273,8794304	8788760,8795789	0.935323
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	72114591	72114605	72114604	+	High_confidence	40	43	107	5.230766	5.913758	chr9	72114564	72114671	SINE|Alu|AluYh9	-	chr9	72114594	72252223	GDA|ENST00000545168.5	+	72114594,72195499,72202570,72210686,72213885,72219478,72223119,72225676,72227942,72231113,72241151,72245147,72247405,72248271	72114833,72195588,72202742,72210774,72213991,72219506,72223227,72225784,72228040,72231181,72241298,72245278,72247433,72252223	0.710280
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	120140707	120140714	120140709	+	RAMPAGE_only	12	17	29	1.417684	3.726474	chrX	120140230	120140875	LTR|ERV1|LTR9C	+	chrX	120036235	120146854	RHOXF1-AS1|ENST00000553843.5	+	120036235,120120851,120138997,120143722,120145637	120036532,120121139,120139119,120143900,120146854	0.965517
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	204140043	204140065	204140059	-	RAMPAGE_only	3	3	13	0.635514	2.522055	chr1	204139662	204140016	DNA|TcMar-Tigger|Tigger3a	-	chr1	204131955	204141262	ETNK2|ENST00000367197.5	-	204131955,204134514,204137103,204140034,204141024	204132256,204134588,204137249,204140118,204141262	0.923077
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	7905910	7905926	7905925	-	High_confidence	5	5	10	0.488857	2.503258	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	54656996	54656997	54656996	-	RAMPAGE_only	208	208	223	10.901503	4.978266	chr3	54656899	54657297	LTR|ERV1|LTR7	-	chr3	54632121	54639857	MSTRG.35417.4	-	54632121,54633558,54634460	54632861,54633740,54639857	0.950673
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	46070214	46070215	46070214	-	RAMPAGE_only	6	6	8	0.391085	2.521641	chr20	46070041	46070172	LINE|L2|L2c	-	chr20	46060984	46089941	NCOA5|NM_020967.2	-	46060984,46063359,46065028,46067054,46068501,46070209,46079386,46089816	46062889,46063680,46065228,46067181,46068638,46070536,46079453,46089941	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	134485443	134485456	134485443	-	High_confidence	9	9	18	0.879942	3.146286	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.944444
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	129208878	129208911	129208890	+	RAMPAGE_only	22	23	87	4.253053	4.909943	chr9	129208847	129209083	LINE|L2|L2c	+	chr9	129176770	129210548	AL158151.1|ENST00000372490.3	+	129176770,129208868	129177137,129210548	0.586207
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	58931653	58931665	58931664	+	RAMPAGE_only	5	5	9	0.439971	2.500000	chr18	58931660	58931962	SINE|Alu|AluJr	+	chr18	58934231	58948081	ZNF532|ENST00000586158.1	+	58934231,58939444,58948066	58934614,58939621,58948081	0.555556
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	55583739	55583740	55583739	-	High_confidence	3475	3580	4499	219.936611	6.740437	chr13	55583637	55584087	LTR|ERV1|LTR7	-	chr13	55516751	55583779	MSTRG.14306.1	-	55516751,55522596,55581427	55516933,55522754,55583779	0.923094
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	27744704	27744729	27744728	-	High_confidence	30	32	68	3.324225	5.608714	chr22	27744682	27745128	LTR|ERV1|LTR7	+	chr22	27675159	27745039	MSTRG.33417.3	-	27675159,27675873,27744370	27675420,27677525,27745039	0.544118
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	102449836	102449839	102449836	+	High_confidence	87	87	149	7.283964	5.160487	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.865772
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	35062145	35062161	35062160	-	High_confidence	66	68	187	9.141620	3.982870	chr15	35062103	35062219	DNA|hAT-Tip100|MamTip3	+	chr15	35056574	35062129	MSTRG.17174.1	-	35056574,35061939,35062097	35056940,35061999,35062129	0.903743
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	28681084	28681085	28681084	+	RAMPAGE_only	30	30	30	1.466570	4.323231	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	50767070	50767071	50767070	+	RAMPAGE_only	9	9	11	0.537742	2.646439	chr12	50766664	50767224	LTR|ERV1|MER41-int	+	chr12	50764508	50814368	ATF1|ENST00000552487.1	+	50764508,50780139,50795908,50809455,50814009,50814279	50764647,50780238,50796009,50809589,50814192,50814368	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	15581928	15581951	15581950	+	RAMPAGE_only	4	5	13	0.635514	3.251629	chr8	15576322	15582323	LINE|L1|L1PA2	-	chr8	15561618	15673836	TUSC3|ENST00000507400.1	+	15561618,15623079,15650696,15659506,15662155,15673746	15561685,15623249,15650814,15659647,15662296,15673836	0.846154
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	48979490	48979524	48979494	+	RAMPAGE_only	11	11	34	1.662113	4.043058	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.970588
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	206812277	206812282	206812277	-	High_confidence	273	275	814	39.792932	6.622207	chr2	206812176	206812627	LTR|ERV1|LTR7	-	chr2	206803162	206812273	MSTRG.30582.1	-	206803162,206812028	206807238,206812273	0.560197
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	206810046	206810171	206810046	+	RAMPAGE_only	14	16	98	4.790795	5.390870	chr2	206809175	206812174	LTR|ERV1|HERVH-int	-	chr2	206939553	206969474	CPO|NM_173077.2	+	206939553,206949616,206955462,206958300,206959630,206960851,206962411,206968262,206969173	206939667,206949713,206955564,206958405,206959741,206960942,206962614,206968347,206969474	0.561224
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	66438588	66438594	66438593	-	High_confidence	4	5	11	0.537742	3.121928	chr11	66438453	66438566	SINE|MIR|MIR	-	chr11	66435837	66438826	MRPL11|ENST00000534488.5	-	66435837,66437103,66437349,66438163,66438631	66436112,66437263,66437435,66438259,66438826	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	120703002	120703029	120703002	-	High_confidence	3	3	9	0.439971	3.169925	chr5	120699773	120702958	LTR|ERV1|HERVH-int	-	chr5	120692571	120703047	MSTRG.42919.1	-	120692571,120702278	120702257,120703047	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	7787776	7787817	7787776	+	High_confidence	14	22	53	2.590940	4.777363	chr12	7787740	7787806	LINE|CR1|L3	+	chr12	7787793	7794808	NANOG|ENST00000541267.5	+	7787793,7788418,7789619,7792949,7794456,7794678	7787843,7788578,7789765,7793212,7794543,7794808	0.886792
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	2798713	2798810	2798807	+	High_confidence	47	53	155	7.577278	5.983112	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.806452
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	188466487	188466498	188466497	+	RAMPAGE_only	2	3	7	0.342200	2.584963	chr2	188466299	188466571	SINE|Alu|AluY	-	chr2	188522737	188584309	GULP1|ENST00000476422.5	+	188522737,188529096,188541180,188569238,188570027,188584264	188522827,188529195,188541318,188569355,188570120,188584309	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	62757905	62758033	62758032	-	High_confidence	31	31	167	8.163906	6.206790	chr11	62757736	62758341	LTR|ERVL|MER21B	-	chr11	62750962	62758050	MSTRG.8665.4	-	62750962,62753963,62757885	62753715,62754519,62758050	0.952096
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	67337553	67337621	67337554	+	RAMPAGE_only	48	63	174	8.506106	5.472866	chr2	67337603	67337725	SINE|Alu|AluJo	+	chr2	67331761	67343461	MSTRG.28003.5	+	67331761,67333952,67337008	67332062,67334150,67343461	0.988506
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	121198585	121198586	121198585	-	High_confidence	16	17	23	1.124370	3.970573	chr11	121198396	121198769	LTR|ERVL-MaLR|MSTA	-	chr11	121187551	121198671	MSTRG.10061.1	-	121187551,121193670,121198529	121187984,121193928,121198671	0.652174
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	171414675	171414676	171414675	-	RAMPAGE_only	14	19	19	0.928828	3.794653	chr2	171414444	171414743	SINE|Alu|AluJb	+	chr2	171331807	171433116	METTL8|ENST00000460539.5	-	171331807,171339183,171392042,171433025	171331867,171339554,171392197,171433116	0.684211
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	48868613	48868666	48868665	-	High_confidence	63	69	432	21.118608	7.033035	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868632	PLEKHA4|ENST00000263265.10	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868632	0.988426
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	87682199	87682205	87682204	+	High_confidence	26	35	73	3.568654	4.736945	chrX	87682131	87685438	LTR|ERV1|HERVH-int	+	chrX	87682039	87687614	MSTRG.56782.2	+	87682039,87687183	87682277,87687614	0.767123
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	223029805	223029806	223029805	-	High_confidence	2788	2852	2987	146.021484	6.228353	chr1	223029701	223030156	LTR|ERV1|LTR7	-	chr1	223009690	223030115	MSTRG.4427.1	-	223009690	223030115	0.983261
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	10338260	10338292	10338260	-	High_confidence	9	13	31	1.515456	4.481728	chr12	10338192	10338643	LTR|ERV1|LTR7	-	chr12	10332860	10338292	AC022075.2|ENST00000539009.1	-	10332860,10336111,10338044	10333063,10336309,10338292	0.677419
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	97217016	97217043	97217042	-	High_confidence	3	3	11	0.537742	2.721928	chr9	97216575	97218235	LTR|ERV1|HERVH-int	+	chr9	97215726	97217362	MSTRG.54563.1	-	97215726	97217362	0.818182
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	57861109	57861147	57861146	+	RAMPAGE_only	3	3	9	0.439971	2.503258	chr19	57861119	57861300	LINE|L1|L1MC	-	chr19	57855968	57864041	ZNF587|ENST00000419854.1	+	57855968,57858575	57856233,57864041	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	134731858	134731860	134731859	+	RAMPAGE_only	10	12	16	0.782171	3.373557	chr11	134731734	134731939	LTR|ERV1|MER39	+	chr11	134735595	134763810	AP001999.1|ENST00000513405.1	+	134735595,134761073	134736542,134763810	0.937500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	2757798	2757814	2757813	+	High_confidence	12	12	30	1.466570	3.721413	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.900000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	121537803	121537884	121537883	+	RAMPAGE_only	7	7	43	2.102084	4.512815	chr1	121532230	121538261	LINE|L1|L1HS	-	chr1	121519344	121568791	EMBP1|ENST00000458200.2	+	121519344,121556509,121556930,121562227,121564636,121565763,121568146,121568775	121519459,121556696,121557019,121562355,121564913,121565797,121568201,121568791	0.674419
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	11417825	11417826	11417825	+	RAMPAGE_only	93	93	93	4.546367	4.501352	chr8	11417597	11418219	LTR|ERV1|MER41B	-	chr8	11795572	11839309	FDFT1|NM_001287744.1	+	11795572,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.989247
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	26395611	26395612	26395611	+	High_confidence	18	21	25	1.222142	3.668296	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	53831789	53831830	53831789	+	High_confidence	4	4	9	0.439971	2.503258	chr19	53831403	53831854	LTR|ERV1|LTR7	+	chr19	53831403	53837782	MSTRG.26570.1	+	53831403,53833874	53832002,53837782	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	195848177	195848204	195848203	-	High_confidence	4	6	13	0.635514	3.546594	chr1	195848133	195848597	LTR|ERV1|LTR7	-	chr1	195847506	195848229	MSTRG.3941.1	-	195847506	195848229	0.846154
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	42866247	42866286	42866247	-	RAMPAGE_only	4	4	15	0.733285	3.323231	chr13	42866151	42866692	LTR|ERVL|MLT2A2	+	chr13	42836602	42872802	MSTRG.13907.2	-	42836602,42842798,42870600	42842551,42868464,42872802	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	127655803	127655862	127655861	+	RAMPAGE_only	29	32	173	8.457220	5.098367	chr4	127650220	127656245	LINE|L1|L1PA2	-	chr4	127632965	127716479	INTU|ENST00000503952.5	+	127632965,127643520,127656635,127663380,127669035,127674123,127684408,127685441,127687740,127700009,127704227,127705590,127706486,127708570,127710912,127713935,127716324	127633180,127644056,127656721,127663584,127669154,127674213,127684486,127685569,127687867,127700063,127704290,127705812,127706969,127708668,127711102,127714093,127716479	0.907514
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	46087112	46087144	46087118	-	High_confidence	73	73	123	6.012937	5.701940	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.918699
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	45195094	45195096	45195094	-	RAMPAGE_only	5	7	9	0.439971	3.169925	chr22	45195082	45195164	SINE|MIR|MIRc	-	chr22	45192241	45212466	KIAA0930|NM_015264.1	-	45192241,45197789,45199872,45202989,45203844,45205216,45205629,45205792,45211955,45212264	45197216,45197948,45200035,45203184,45203985,45205318,45205707,45205912,45212107,45212466	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	18668943	18668944	18668943	-	RAMPAGE_only	302	302	309	15.105671	6.207630	chr5	18668842	18669292	LTR|ERV1|LTR7	-	chr5	18649608	18674250	MSTRG.41183.6	-	18649608,18664323,18672041,18674004	18658539,18664434,18672143,18674250	0.957929
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	69123011	69123015	69123014	+	High_confidence	6	6	11	0.537742	2.721928	chr9	69122999	69123107	DNA|hAT-Charlie|MER5A1	+	chr9	69123047	69246746	TJP2|ENST00000647986.1	+	69123047,69151650,69185086,69212547,69216338,69218256,69220886,69225303,69226021,69227764,69227980,69229183,69230081,69234438,69236027,69236948,69237877,69238709,69239936,69246689	69123113,69151771,69185204,69212601,69216463,69218359,69221496,69225407,69226175,69227873,69228114,69229250,69230232,69234547,69236238,69237136,69237973,69238789,69240147,69246746	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	152412488	152412498	152412497	-	High_confidence	7	7	14	0.684399	3.180833	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	125707201	125707252	125707251	-	High_confidence	20	20	44	2.150969	4.384790	chr6	125704049	125707311	LTR|ERV1|HERVH-int	-	chr6	125681551	125707408	MSTRG.46655.2	-	125681551,125694166,125707165	125689646,125694398,125707408	0.863636
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	12754169	12754170	12754169	+	High_confidence	1392	1421	1966	96.109219	6.688269	chr20	12753819	12754274	LTR|ERV1|LTR7	+	chr20	12754174	12763001	MSTRG.31518.2	+	12754174,12756137,12760245	12754422,12756425,12763001	0.595117
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	83208368	83208380	83208368	-	High_confidence	5	5	12	0.586628	3.277613	chr15	83208333	83208482	SINE|MIR|MIR3	+	chr15	83127752	83208018	HDGFL3|ENST00000299633.6	-	83127752,83151214,83157414,83157902,83163998,83207330	83139275,83151361,83157573,83158041,83164075,83208018	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	102929989	102930010	102930009	+	High_confidence	4	4	15	0.733285	3.640224	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	92103488	92103489	92103488	-	RAMPAGE_only	14	14	18	0.879942	3.086049	chrX	92102573	92105434	LTR|ERV1|HERVH-int	-	chrX	92098887	92105580	MSTRG.56850.1	-	92098887,92105292	92104306,92105580	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	71966858	71966859	71966858	+	RAMPAGE_only	4	4	6	0.293314	2.584963	chr9	71966509	71967002	LTR|ERV1|LTR49	-	chr9	71911801	71972843	C9orf85|ENST00000377027.1	+	71911801,71918424,71947005,71971504,71972691	71911836,71918555,71947112,71971618,71972843	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	167228016	167228023	167228016	+	High_confidence	4	4	8	0.391085	3.000000	chr6	167227674	167231799	LTR|ERV1|HUERS-P1-int	+	chr6	167228299	167237511	HPAT5|ENST00000628362.2	+	167228299,167231826,167232478,167237240	167228397,167231957,167232560,167237511	0.625000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	187520611	187520612	187520611	-	High_confidence	14	15	15	0.733285	3.235926	chr2	187517160	187520609	LINE|L1|L1P3	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.933333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	117346772	117346789	117346788	-	RAMPAGE_only	8	8	22	1.075485	3.880180	chr10	117346491	117347151	LTR|ERV1|LTR9C	+	chr10	117277273	117375467	PDZD8|ENST00000334464.6	-	117277273,117290185,117318871,117340979,117374355	117285471,117290348,117318974,117341102,117375467	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	175594321	175594334	175594333	+	High_confidence	3	3	7	0.342200	2.807355	chr2	175588546	175594563	LINE|L1|L1PA2	-	chr2	175594103	175595849	MSTRG.29807.1	+	175594103	175595849	0.571429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	34918370	34918371	34918370	+	RAMPAGE_only	87	95	118	5.768509	4.795149	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	0.991525
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	20809912	20809937	20809913	+	RAMPAGE_only	6	9	24	1.173256	3.663533	chr19	20807724	20813827	LINE|L1|L1PA3	+	chr19	20776309	20829713	MSTRG.25526.3	+	20776309,20792511,20793782,20805826,20829664	20776450,20792638,20793878,20812918,20829713	0.916667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	7878045	7878105	7878045	+	High_confidence	6	6	27	1.319913	3.750465	chr2	7875014	7878438	LTR|ERV1|HERVH-int	-	chr2	7878002	7893848	MSTRG.26957.1	+	7878002,7883431,7891272	7878481,7883559,7893848	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	19349999	19350097	19350021	+	RAMPAGE_only	6	10	32	1.564341	4.256565	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19352828	19355445	PDHA1|ENST00000479146.1	+	19352828,19354490,19355348	19353173,19354583,19355445	0.593750
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	77098260	77098273	77098260	+	RAMPAGE_only	67	75	115	5.621852	4.986224	chr2	77098179	77099600	LINE|L1|L1ME3C	+	chr2	77090027	77103594	MSTRG.28354.3	+	77090027,77093656	77090900,77103594	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	200411683	200411812	200411799	+	High_confidence	2461	2505	5031	245.943785	6.138770	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411799	200475513	AC104461.1|ENST00000634596.1	+	200411799,200473908	200411962,200475513	0.898032
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	61773975	61773998	61773975	+	RAMPAGE_only	14	14	25	1.222142	3.375815	chr4	61773960	61774042	DNA|TcMar-Tigger|MER44A	+	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.600000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	70621775	70621801	70621775	-	High_confidence	3	3	14	0.684399	2.968919	chr16	70621610	70622062	LTR|ERV1|LTR7	-	chr16	70620821	70621730	MSTRG.20447.1	-	70620821	70621730	0.785714
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	17336685	17336720	17336685	+	High_confidence	24	27	50	2.444283	4.441041	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.860000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	35269713	35269714	35269713	+	RAMPAGE_only	85	87	89	4.350824	5.310755	chr8	35269712	35269905	SINE|MIR|MIRb	-	chr8	35259743	35274997	MSTRG.51146.7	+	35259743,35271464	35271218,35274997	0.955056
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	153967482	153967512	153967497	+	High_confidence	9	9	22	1.075485	3.553763	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.818182
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	57560390	57560392	57560390	+	RAMPAGE_only	4	7	10	0.488857	2.725481	chr3	57560303	57560625	SINE|Alu|AluSq2	-	chr3	57556276	57566844	PDE12|ENST00000311180.8	+	57556276,57559309,57559561	57557687,57559388,57566844	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	183452096	183452120	183452116	+	High_confidence	4	5	14	0.684399	3.026987	chr3	183452059	183452354	SINE|Alu|AluSz6	-	chr3	183451740	183455335	LINC00888|ENST00000487386.1	+	183451740,183452370,183454014,183455190	183451822,183452485,183454093,183455335	0.571429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	97218329	97218377	97218350	-	RAMPAGE_only	8	8	25	1.222142	3.749275	chr9	97218229	97218379	LTR|ERV1|HERVH-int	+	chr9	97155892	97238742	ANKRD18CP|NR_136286.1	-	97155892,97160181,97161754,97162564,97170606,97172947,97178263,97179996,97185441,97187453,97191730,97194702,97195478,97196143,97196528,97200458,97211372,97238422	97156585,97160402,97161966,97162846,97170736,97173060,97178413,97180916,97185515,97187507,97191798,97194840,97195665,97196213,97196594,97200565,97211487,97238742	0.560000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	35390556	35390586	35390585	+	RAMPAGE_only	3	3	14	0.684399	3.238901	chr1	35390271	35390664	LTR|ERV1|LTR7	-	chr1	35392679	35397462	ZMYM4|ENST00000470175.1	+	35392679,35393594,35396551,35397051,35397376	35392684,35393739,35396670,35397123,35397462	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	68749203	68749258	68749239	+	RAMPAGE_only	5	5	27	1.319913	3.931209	chr10	68749287	68749410	LINE|L1|L1MB3	+	chr10	68721254	68791355	CCAR1|ENST00000540210.5	+	68721254,68722454,68736875,68737844,68740628,68742375,68747160,68747373,68749135,68749523,68753851,68754713,68755369,68757293,68761006,68765887,68771205,68772987,68786135,68786545,68787926,68788142,68789709,68791206	68721288,68722577,68737048,68737889,68740661,68742569,68747275,68747566,68749265,68749685,68754077,68754827,68755536,68757377,68761192,68766079,68771445,68773099,68786218,68786692,68788047,68788328,68789915,68791355	0.851852
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	13347215	13347261	13347236	-	RAMPAGE_only	4	4	16	0.782171	3.189898	chr3	13347196	13347296	LINE|L2|L2c	+	chr3	13316234	13420309	NUP210|ENST00000254508.6	-	13316234,13319071,13319229,13319762,13321584,13322192,13323308,13325794,13327216,13328770,13330459,13332292,13335453,13336786,13337836,13339853,13340235,13341747,13341995,13343174,13351878,13352079,13353553,13353914,13358221,13360269,13365945,13371833,13373717,13375503,13376290,13377455,13378911,13379562,13386274,13388302,13391210,13397356,13399724,13420059	13317781,13319155,13319325,13319979,13321835,13322339,13323432,13325931,13327437,13328946,13330634,13332384,13335612,13336918,13337917,13340033,13340298,13341883,13342123,13343303,13351980,13352184,13353660,13354107,13358395,13360491,13366091,13372032,13373873,13375641,13376431,13377562,13378980,13379721,13386407,13388453,13391307,13397488,13399861,13420309	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	70621711	70621715	70621714	-	High_confidence	152	161	234	11.439246	6.152350	chr16	70621610	70622062	LTR|ERV1|LTR7	-	chr16	70620821	70621730	MSTRG.20447.1	-	70620821	70621730	0.692308
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	132627079	132627117	132627106	-	High_confidence	54	58	126	6.159594	5.386338	chr3	132627080	132627408	LTR|ERV1|MER61C	+	chr3	132579178	132627074	ACAD11|ENST00000487024.1	-	132579178,132603228,132605097,132618633,132619467,132626690	132579558,132603327,132605205,132618772,132619545,132627074	0.865079
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	23534904	23534945	23534904	-	RAMPAGE_only	4	6	17	0.831056	3.500000	chr16	23534761	23534863	SINE|MIR|MIRb	-	chr16	23522623	23550842	EARS2|ENST00000564987.1	-	23522623,23523510,23525243,23529501,23529743,23532656,23534887,23544513,23550783	23523417,23524454,23525379,23529632,23529917,23532765,23535360,23544563,23550842	0.764706
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	40269575	40269593	40269592	+	High_confidence	18	20	43	2.102084	4.472322	chr20	40269505	40272453	LTR|ERV1|HERVH-int	+	chr20	40269405	40274720	MSTRG.32030.4	+	40269405,40274362	40271601,40274720	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrY	13296277	13296337	13296336	-	RAMPAGE_only	12	13	45	2.199855	4.470205	chrY	13295489	13297031	LTR|ERVL-MaLR|MSTB1-int	-	chrY	13234210	13479978	MSTRG.57965.1	-	13234210,13251016,13260277,13297706,13298956,13302876,13305398,13306037,13306185,13323554,13324600,13326220,13335562,13355002,13355922,13357876,13359087,13359766,13360429,13366266,13369255,13393858,13396917,13410992,13414734,13449016,13470120,13479253,13479513	13234826,13251187,13260404,13297848,13299144,13302991,13305547,13306112,13306250,13323760,13324706,13326350,13336335,13355398,13356018,13357969,13359222,13359986,13360528,13366393,13369349,13393893,13396972,13411113,13414793,13449066,13470229,13479317,13479978	0.533333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	109881120	109881145	109881139	-	High_confidence	10	10	26	1.271027	3.668296	chr12	109881109	109881661	LTR|ERV1|MER51B	+	chr12	109850942	109880488	GLTP|NM_016433.3	-	109850942,109855618,109857525,109858682,109880271	109852737,109855769,109857659,109858741,109880488	0.615385
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	73994876	73994877	73994876	+	RAMPAGE_only	40	41	57	2.786483	3.956259	chrX	73994826	73995038	SINE|Alu|AluSp	-	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.859649
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	10120434	10120435	10120434	+	High_confidence	46	46	57	2.786483	4.458527	chr2	10120422	10120535	SINE|Alu|FLAM_C	+	chr2	10120697	10131418	RRM2|ENST00000641198.1	+	10120697,10122754,10122982,10123386,10123735,10124716,10126874,10127086,10128847,10129040,10129233	10120882,10122897,10123057,10123530,10123852,10124850,10126969,10127220,10128952,10129154,10131418	0.754386
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	93733877	93733880	93733879	-	High_confidence	3	6	8	0.391085	2.500000	chr11	93733698	93733829	SINE|Alu|AluJo	-	chr11	93730282	93734661	TAF1D|ENST00000525928.5	-	93730282,93730676,93731149,93731752,93732243,93733086,93733349	93730447,93730712,93731216,93731799,93732291,93733121,93734661	0.625000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	18149848	18149869	18149868	+	High_confidence	13	13	26	1.271027	3.813661	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.923077
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	67920047	67920096	67920095	+	High_confidence	7	9	36	1.759884	4.680768	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	155280498	155280499	155280498	-	High_confidence	1248	1259	1617	79.048122	6.510665	chr3	155280394	155280798	LTR|ERV1|LTR7	-	chr3	155247734	155280567	MSTRG.37339.1	-	155247734,155258618,155265037,155278366,155280246	155250826,155258682,155265158,155278559,155280567	0.790353
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	160234359	160234427	160234411	-	RAMPAGE_only	6	6	27	1.319913	3.997953	chr6	160234323	160234606	LTR|ERV1|MER41-int	+	chr6	160217013	160218284	SLC22A2|ENST00000498556.1	-	160217013,160217893,160218199	160217498,160218058,160218284	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	127330917	127330938	127330937	-	High_confidence	3	3	7	0.342200	2.521641	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	54572234	54572235	54572234	+	High_confidence	34	34	42	2.053198	4.834184	chr13	54572234	54573121	LINE|L1|L1HS	+	chr13	54572242	54592414	MSTRG.14225.1	+	54572242,54581570,54592369	54572379,54581771,54592414	0.690476
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	100593604	100593624	100593611	+	High_confidence	11	13	54	2.639826	4.757215	chrX	100593595	100593649	LINE|CR1|L3	+	chrX	100593623	100597531	TNMD|ENST00000485971.1	+	100593623,100594260,100597503	100594035,100594362,100597531	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	30642397	30642415	30642397	+	High_confidence	2	2	7	0.342200	2.521641	chr7	30636808	30642830	LINE|L1|L1PA2	-	chr7	30642670	30654546	MSTRG.48093.1	+	30642670,30654317	30642836,30654546	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	171251817	171251841	171251817	-	High_confidence	2	2	9	0.439971	2.500000	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171247579	171251794	AL445673.1|ENST00000455124.2	-	171247579,171251522	171247723,171251794	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	155280297	155280381	155280380	-	High_confidence	5	5	25	1.222142	4.213661	chr3	155277496	155280392	LTR|ERV1|HERVH-int	-	chr3	155247734	155280567	MSTRG.37339.1	-	155247734,155258618,155265037,155278366,155280246	155250826,155258682,155265158,155278559,155280567	0.680000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	13846099	13846125	13846124	-	RAMPAGE_only	2	2	6	0.293314	2.584963	chr21	13845763	13846089	LTR|ERVL|LTR16C	-	chr21	13843132	13848364	CYP4F29P|ENST00000428301.1	-	13843132,13844021,13845004,13846012,13846758,13848089	13843432,13844135,13845274,13846141,13846949,13848364	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	126460150	126460180	126460158	-	High_confidence	9	10	56	2.737597	4.769159	chrX	126459945	126460670	LINE|L1|L1PA4	+	chrX	126261333	126460427	MSTRG.57402.1	-	126261333,126281255,126282891,126459939	126273071,126281385,126282998,126460427	0.839286
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	24995241	24995270	24995268	+	RAMPAGE_only	10	17	31	1.515456	3.873236	chr15	24995035	24995326	SINE|Alu|AluSx4	+	chr15	24981993	25002404	MSTRG.17009.23	+	24981993,24998969,25000244,25001357	24998486,24999078,25000374,25002404	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147874181	147874182	147874181	-	High_confidence	168	180	230	11.243703	6.040378	chr5	147874077	147874526	LTR|ERV1|LTR7	-	chr5	147856041	147874184	MSTRG.43556.2	-	147856041,147873929	147873044,147874184	0.595652
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	139279766	139279769	139279766	+	RAMPAGE_only	3	3	8	0.391085	2.750000	chr5	139279505	139279801	SINE|Alu|AluSg	-	chr5	139274101	139280947	SNHG4|ENST00000648842.1	+	139274101,139276120,139278326,139279050,139279934	139274161,139276150,139278408,139279129,139280947	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	114344978	114344979	114344978	-	RAMPAGE_only	7	7	10	0.488857	2.725481	chr13	114344326	114345134	LTR|ERV1|MER92-int	-	chr13	114329558	114333948	LINC01054|ENST00000446989.1	-	114329558,114330665,114333834	114329845,114330778,114333948	0.900000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	55578207	55578255	55578228	-	High_confidence	15	18	34	1.662113	3.935661	chr13	55578227	55578676	LTR|ERV1|LTR7	-	chr13	55556518	55578713	MSTRG.14306.7	-	55556518,55558593,55577089	55558528,55576966,55578713	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	19968240	19968241	19968240	-	RAMPAGE_only	9	9	12	0.586628	2.855389	chr7	19966603	19968396	LINE|L2|L2a	+	chr7	19931070	20125162	AC005062.1|ENST00000415499.5	-	19931070,19960921,19968136,20028918,20045502,20125079	19931298,19960994,19968395,20028959,20045561,20125162	0.583333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	58306086	58306105	58306086	+	High_confidence	7	7	12	0.586628	2.625815	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305373	58315202	ERVK3-1|ENST00000427361.5	+	58305373,58306087,58312196,58314747	58305445,58306216,58312462,58315202	0.583333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	571746	571792	571754	-	High_confidence	36	48	149	7.283964	5.210381	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.959732
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	55721082	55721151	55721121	+	High_confidence	7	7	31	1.515456	4.413716	chr18	55715484	55721529	LINE|L1|L1PA2	-	chr18	55721062	55759122	AC022031.2|ENST00000592936.1	+	55721062,55759039	55721534,55759122	0.774194
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147871116	147871117	147871116	+	High_confidence	9	9	12	0.586628	2.855389	chr5	147870677	147871181	LTR|ERV1|HERVH-int	-	chr5	147871497	147882190	SCGB3A2|ENST00000507160.5	+	147871497,147881445,147882026	147871679,147881648,147882190	0.583333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	6820195	6820196	6820195	+	RAMPAGE_only	11	14	15	0.733285	2.896292	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6853094	6872045	CAMTA1|ENST00000472283.1	+	6853094,6871756	6853189,6872045	0.866667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	209299603	209299622	209299610	+	High_confidence	9	9	27	1.319913	4.282484	chr2	209299312	209299790	LTR|ERV1|LTR7	+	chr2	209299631	209324597	MSTRG.30701.2	+	209299631,209304476,209323399	209299938,209321795,209324597	0.925926
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	3297436	3297450	3297436	-	High_confidence	14	18	41	2.004312	4.313460	chr18	3296458	3297771	LINE|L1|L1PB3	+	chr18	3296515	3297182	MSTRG.23427.1	-	3296515	3297182	0.707317
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	211399158	211399159	211399158	+	High_confidence	49	51	60	2.933140	4.994309	chr1	211398719	211399312	LTR|ERVK|MER11C	+	chr1	211399257	211432534	LINC00467|ENST00000610948.1	+	211399257,211426210,211432318	211399437,211426283,211432534	0.883333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	36807856	36807870	36807868	-	High_confidence	20	37	77	3.764196	5.302213	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.805195
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	18939644	18939645	18939644	+	High_confidence	25	25	31	1.515456	4.056565	chr22	18939641	18945174	LTR|ERVK|HERVK-int	+	chr22	18939488	18947294	MSTRG.33137.12	+	18939488	18947294	0.967742
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	98644539	98644556	98644539	+	RAMPAGE_only	3	3	8	0.391085	2.500000	chrX	98644294	98644817	LINE|L2|L2a	+	chrX	98573874	98865041	AL157778.1|ENST00000627700.2	+	98573874,98578985,98644527,98864610	98573932,98579074,98644574,98865041	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	25445921	25445925	25445921	-	High_confidence	952	964	2103	102.806555	8.159395	chr5	25445822	25446221	LTR|ERV1|LTR7	-	chr5	25385439	25445907	MSTRG.41248.2	-	25385439,25422729	25413844,25445907	0.817879
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	174118117	174118131	174118117	-	High_confidence	7	7	19	0.928828	3.725481	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075189	174118683	MSTRG.29778.4	-	174075189,174078967,174081151,174081923,174117937	174075527,174079090,174081248,174082001,174118683	0.736842
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	51175988	51176006	51175988	+	RAMPAGE_only	2	2	8	0.391085	2.521641	chr13	51175741	51176125	LTR|ERVL-MaLR|MSTA	+	chr13	51169551	51189994	MSTRG.14071.4	+	51169551,51174548	51170462,51189994	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	97217477	97217478	97217477	-	High_confidence	5	7	7	0.342200	2.521641	chr9	97216575	97218235	LTR|ERV1|HERVH-int	+	chr9	97215726	97217362	MSTRG.54563.1	-	97215726	97217362	0.571429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	145334126	145334127	145334126	+	High_confidence	272	273	299	14.616814	4.705388	chr3	145333210	145334513	LTR|ERV1|LTR12C	+	chr3	145334132	145375812	MSTRG.37226.1	+	145334132,145373696,145375427	145334524,145373754,145375812	0.973244
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	54639853	54639857	54639856	-	High_confidence	5873	6065	9549	466.809224	7.150875	chr3	54639752	54640204	LTR|ERV1|LTR7	-	chr3	54632121	54639857	MSTRG.35417.4	-	54632121,54633558,54634460	54632861,54633740,54639857	0.986072
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	67889992	67889994	67889992	-	High_confidence	9	14	19	0.928828	3.058814	chr5	67889604	67895628	LINE|L1|L1PA2	+	chr5	67800739	67890096	AC024581.1|ENST00000514791.1	-	67800739,67889601,67889865	67800956,67889719,67890096	0.736842
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	10710653	10710654	10710653	-	High_confidence	47	47	48	2.346512	3.785750	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.916667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	27634543	27634581	27634577	-	High_confidence	3943	4032	12096	591.321015	7.150094	chr11	27634478	27634926	LTR|ERV1|LTR7	-	chr11	27617625	27634627	LINC00678|NR_102708.1	-	27617625,27618111,27623949,27634330	27618023,27618182,27624145,27634627	0.875331
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	7874059	7874086	7874059	+	RAMPAGE_only	5	5	9	0.439971	2.947703	chr2	7873770	7874391	LTR|ERV1|HERVH-int	-	chr2	7878002	7893848	MSTRG.26957.1	+	7878002,7883431,7891272	7878481,7883559,7893848	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	25031192	25031240	25031192	+	RAMPAGE_only	7	7	41	2.004312	4.237646	chr15	25030845	25031591	LINE|L1|L1MEf	-	chr15	24979556	25036490	MSTRG.17009.21	+	24979556,24979946,24981774,24998365,24998969,25000244,25001357,25002724,25019026,25019827,25020589,25035039	24979642,24980084,24982437,24998486,24999078,25000374,25001713,25002888,25019148,25019869,25034866,25036490	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	13934492	13934493	13934492	-	RAMPAGE_only	40	45	57	2.786483	4.417077	chr21	13934252	13936999	Retroposon|SVA|SVA_A	-	chr21	13903885	13960949	MSTRG.32510.2	-	13903885,13907889,13909573,13910495,13911717,13915186,13916746,13917554,13925163,13932227,13933666,13939245,13940814,13945038,13951066,13951231,13954065,13958115	13907736,13908028,13909693,13910549,13911763,13915409,13916958,13917836,13925293,13932374,13938067,13939428,13940978,13945109,13951139,13951260,13954147,13960949	0.964912
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	122074966	122075163	122075014	-	RAMPAGE_only	95	114	1112	54.360860	5.828165	chr7	122074849	122075173	SINE|Alu|AluJr	-	chr7	122073543	122144290	AASS|NM_005763.3	-	122073543,122077837,122078861,122079596,122081499,122086011,122091702,122092842,122093047,122098449,122098744,122101370,122101620,122113117,122113597,122115073,122116632,122116878,122118306,122118562,122126374,122129360,122133516,122144160	122076607,122078014,122078950,122079712,122081595,122086179,122091843,122092951,122093158,122098576,122098866,122101438,122101680,122113229,122113720,122115222,122116760,122116957,122118453,122118630,122126459,122129537,122133741,122144290	0.998201
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	131756642	131756671	131756670	-	High_confidence	3	3	11	0.537742	2.845351	chrX	131756588	131756710	SINE|Alu|AluJr	-	chrX	131694860	131755709	FIRRE|ENST00000648028.1	-	131694860,131749305,131755597	131695913,131749458,131755709	0.818182
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	79545520	79545528	79545520	+	High_confidence	28	32	51	2.493169	5.037827	chr12	79545174	79545625	LTR|ERV1|LTR7	+	chr12	79545529	79550535	AC027288.1|ENST00000552167.1	+	79545529,79546065,79550108	79545558,79546176,79550535	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	69004719	69004751	69004719	+	High_confidence	4	4	18	0.879942	3.614369	chr17	69000000	69005148	LINE|L1|L1HS	-	chr17	69004713	69018323	ABCA9-AS1|ENST00000458677.1	+	69004713,69011982,69012251,69018103	69004793,69012103,69012353,69018323	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	197640370	197640384	197640383	+	High_confidence	7	7	30	1.466570	4.228165	chr2	197634735	197640761	LINE|L1|L1PA2	-	chr2	197640641	197641808	MSTRG.30340.1	+	197640641	197641808	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	20123283	20123290	20123283	-	RAMPAGE_only	10	12	18	0.879942	3.947703	chr7	20121168	20124011	LTR|ERV1|HERVH-int	+	chr7	19931070	20125162	AC005062.1|ENST00000415499.5	-	19931070,19960921,19968136,20028918,20045502,20125079	19931298,19960994,19968395,20028959,20045561,20125162	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	41982063	41982068	41982063	-	RAMPAGE_only	10	10	18	0.879942	3.101881	chr19	41982026	41982072	LINE|CR1|L3	-	chr19	41966581	41993467	ATP1A3|NM_001256213.1	-	41966581,41967248,41967661,41968784,41969434,41970184,41970387,41975628,41976415,41977935,41978150,41978605,41981501,41981721,41981907,41984917,41985305,41985863,41986115,41987935,41988317,41988475,41993392	41966965,41967340,41967763,41968915,41969580,41970308,41970542,41975797,41976566,41978072,41978326,41978798,41981636,41981831,41982106,41985186,41985423,41985998,41986229,41988139,41988377,41988562,41993467	0.944444
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	75127183	75127228	75127183	-	High_confidence	29	29	165	8.066135	5.550020	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75127221	MSTRG.39219.1	-	75081701,75084588,75127065	75082357,75084703,75127221	0.763636
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	21214843	21214883	21214853	+	RAMPAGE_only	7	7	37	1.808770	4.392147	chr12	21209060	21215087	LINE|L1|L1PA2	-	chr12	21131201	21239246	SLCO1B1|ENST00000256958.2	+	21131201,21141513,21172649,21174576,21176775,21178575,21178921,21196945,21200507,21202490,21205867,21217118,21222299,21224721,21238978	21131236,21141658,21172791,21174709,21176897,21178722,21179020,21197188,21200672,21202686,21206033,21217303,21222364,21224839,21239246	0.513514
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	52039216	52039217	52039216	-	High_confidence	2794	2859	3022	147.732482	7.275183	chr10	52039112	52039561	LTR|ERV1|LTR7	-	chr10	52024537	52039223	MSTRG.6064.1	-	52024537,52036950,52038964	52034217,52037298,52039223	0.749504
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	20706862	20706886	20706885	-	High_confidence	4	4	11	0.537742	3.459432	chr14	20706808	20707335	LTR|ERV1|LTR26B	-	chr14	20693479	20707120	AL163636.1|ENST00000554286.1	-	20693479,20699035,20699321,20706746	20693749,20699129,20699498,20707120	0.818182
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	112850170	112850235	112850234	+	High_confidence	4	4	16	0.782171	2.750000	chr1	112850184	112850373	SINE|MIR|MIR	+	chr1	112850075	112877867	AL390729.1|ENST00000422022.1	+	112850075,112877729	112850427,112877867	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	85666641	85666682	85666681	+	High_confidence	148	170	584	28.549229	5.565532	chr13	85666450	85666765	LTR|ERV1|MER50	+	chr13	85666581	85797118	MSTRG.14624.1	+	85666581,85676529,85696133,85738836,85774267	85666760,85676613,85696229,85738905,85797118	0.743151
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	123060137	123060256	123060174	-	High_confidence	644	687	3803	185.912187	5.642150	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.664475
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	104254172	104254173	104254172	+	High_confidence	23	24	26	1.271027	3.653661	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254163	104266190	GSTO1|ENST00000493946.1	+	104254163,104255162,104259575,104262978,104266083	104254499,104255271,104259798,104263077,104266190	0.961538
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	223029684	223029703	223029702	-	High_confidence	11	12	24	1.173256	4.001629	chr1	223026735	223029699	LTR|ERV1|HERVH-int	-	chr1	223009690	223030115	MSTRG.4427.1	-	223009690	223030115	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	126460321	126460363	126460362	-	High_confidence	48	54	246	12.025874	5.462115	chrX	126459945	126460670	LINE|L1|L1PA4	+	chrX	126261333	126460427	MSTRG.57402.1	-	126261333,126281255,126282891,126459939	126273071,126281385,126282998,126460427	0.861789
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	61773858	61773869	61773858	+	RAMPAGE_only	23	23	44	2.150969	3.740316	chr4	61773644	61773960	LTR|ERV1|MER34A1	-	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.863636
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	62897430	62897431	62897430	+	High_confidence	14	14	16	0.782171	3.323231	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.687500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147871379	147871404	147871398	+	High_confidence	4	4	13	0.635514	3.584963	chr5	147871298	147874075	LTR|ERV1|HERVH-int	-	chr5	147871497	147882190	SCGB3A2|ENST00000507160.5	+	147871497,147881445,147882026	147871679,147881648,147882190	0.769231
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	142703352	142703403	142703352	+	High_confidence	176	178	467	22.829606	6.920488	chr5	142703261	142703449	LTR|ERVL-MaLR|MLT1I	-	chr5	142703363	142760998	MSTRG.43438.4	+	142703363,142745207,142756733,142757826,142759085	142703490,142745722,142756830,142757934,142760998	0.513919
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	34720148	34720154	34720153	-	RAMPAGE_only	5	5	9	0.439971	2.500000	chr6	34719459	34720428	LTR|ERVK|LTR5_Hs	-	chr6	34587279	34696850	C6orf106|NM_024294.3	-	34587279,34606554,34646600,34654624,34696445	34590600,34606904,34646798,34654779,34696850	0.555556
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	73144752	73144753	73144752	-	RAMPAGE_only	21	21	29	1.417684	3.485228	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.965517
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	102285723	102285755	102285754	-	RAMPAGE_only	3	5	11	0.537742	3.121928	chr8	102285712	102285783	DNA|hAT-Ac|OldhAT1	-	chr8	102253011	102305182	MSTRG.52213.1	-	102253011,102257631,102258315,102258984,102261145,102261914,102264473,102265099,102266946,102268977,102270038,102271133,102272528,102275520,102275707,102276971,102278825,102279035,102280393,102281288,102285126,102285512,102286359,102287432,102288154,102289452,102293604,102293954,102294981,102295203,102295413,102295635,102296892,102297457,102298391,102298847,102299451,102299999,102304042,102305084	102254514,102257717,102258424,102259129,102261259,102262070,102264558,102265278,102267007,102269108,102270183,102271245,102272772,102275619,102275828,102277192,102278939,102279208,102280467,102281519,102285338,102285781,102286617,102287564,102288266,102289576,102293844,102294115,102295111,102295330,102295532,102295782,102296984,102297606,102298489,102298971,102299547,102300151,102304169,102305182	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	33351848	33351853	33351848	+	High_confidence	10	16	30	1.466570	4.173557	chr7	33351630	33351888	LTR|ERV1|MER61C	-	chr7	33351926	33604952	MSTRG.48163.13	+	33351926,33357854,33367766,33383665,33387991,33505462,33533953,33604864	33352049,33357995,33367862,33383838,33388144,33505645,33534176,33604952	0.966667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	125705054	125705110	125705054	+	RAMPAGE_only	10	14	54	2.639826	3.953321	chr6	125704049	125707311	LTR|ERV1|HERVH-int	-	chr6	125674352	125720218	LOC643623|NR_038906.1	+	125674352,125682376,125683641,125717457	125674475,125682417,125683679,125720218	0.962963
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	72186084	72186085	72186084	+	RAMPAGE_only	162	163	185	9.043848	4.324422	chr12	72184856	72186604	LTR|ERV1|LTR12C	+	chr12	72031291	72186618	TPH2|ENST00000547348.5	+	72031291,72047555,72167537,72186156	72031391,72047657,72167654,72186618	0.967568
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	75324606	75324638	75324606	-	High_confidence	34	42	179	8.750534	5.846184	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223702	75324741	CASC9|ENST00000522183.1	-	75223702,75324564	75224358,75324741	0.581006
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	128626743	128626821	128626820	-	RAMPAGE_only	33	35	97	4.741910	5.127810	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147870373	147870412	147870397	+	High_confidence	3	3	14	0.684399	3.182006	chr5	147870286	147870454	LTR|ERV1|HERVH-int	-	chr5	147870591	147882191	MSTRG.43559.1	+	147870591,147872176,147881445,147882026	147871679,147872321,147881648,147882191	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	23384775	23384866	23384865	-	High_confidence	71	76	369	18.038811	7.014433	chr21	23384605	23385150	LTR|ERVL|MLT2B3	-	chr21	23361109	23384861	MSTRG.32574.2	-	23361109,23372326,23372947,23384687	23364193,23372448,23373084,23384861	0.661247
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	99718527	99718560	99718541	+	RAMPAGE_only	12	12	46	2.248741	4.096944	chr13	99718389	99718557	LTR|ERV1|MER34D	-	chr13	99606695	99892564	CLYBL|ENST00000339105.8	+	99606695,99772823,99858860,99862990,99864817,99866239,99870937,99891317,99892442	99606757,99773010,99859049,99863092,99864911,99866407,99871062,99891437,99892564	0.673913
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	26953947	26953952	26953951	-	RAMPAGE_only	4	6	9	0.439971	2.725481	chr1	26953674	26953977	SINE|Alu|AluJb	+	chr1	26949564	26960385	KDF1|ENST00000616918.1	-	26949564,26950681,26951341,26952159,26960349	26950151,26950756,26952041,26952412,26960385	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	8600709	8600749	8600748	+	High_confidence	21	21	97	4.741910	4.927348	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600725	8788523	PLCB1|ENST00000626966.2	+	8600725,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8600781,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788523	0.824742
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	176815974	176815980	176815974	+	RAMPAGE_only	5	5	16	0.782171	2.875000	chr1	176815545	176816149	LTR|ERV1|MER4A1_	-	chr1	176463170	176845605	PAPPA2|ENST00000367662.4	+	176463170,176555406,176594523,176670969,176690136,176692125,176695737,176699099,176702606,176706358,176709982,176711834,176739625,176739979,176765665,176769606,176770966,176789808,176791346,176793559,176800060,176840172,176842379	176463418,176557241,176595595,176671115,176690430,176692318,176695859,176699589,176702735,176706450,176710176,176711981,176739761,176740196,176765837,176769784,176771180,176789977,176791482,176793669,176800132,176840271,176845605	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	101308299	101308325	101308324	+	High_confidence	897	986	1795	87.749770	6.818691	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.923677
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	166850124	166850125	166850124	+	RAMPAGE_only	49	58	70	3.421997	5.091723	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	58032983	58033004	58032983	-	RAMPAGE_only	8	9	20	0.977713	3.284184	chr14	58032539	58038561	LINE|L1|L1PA2	+	chr14	58000760	58152213	ARMH4|ENST00000267485.7	-	58000760,58005047,58012118,58096723,58131511,58133089,58137989,58152074	58004804,58005182,58012150,58096981,58131721,58133341,58139414,58152213	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	13912586	13912587	13912586	+	High_confidence	8	11	11	0.537742	2.594907	chr19	13912634	13912662	SINE|MIR|MIRb	+	chr19	13913252	13930879	CC2D1A|ENST00000586955.5	+	13913252,13913403,13918069,13918503,13918745,13918911,13919129,13920556,13920749,13923332,13923547,13923694,13926516,13926666,13926820,13926977,13927174,13927892,13928123,13929378,13929533,13930077,13930241,13930374	13913302,13913638,13918194,13918576,13918817,13919042,13919202,13920668,13920922,13923455,13923606,13923811,13926590,13926725,13926872,13927077,13927265,13928030,13928188,13929442,13929660,13930154,13930289,13930879	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	87134137	87134138	87134137	+	RAMPAGE_only	16	18	19	0.928828	3.503258	chr4	87134085	87134155	LINE|L2|L2a	+	chr4	87007395	87135701	AFF1|ENST00000544085.5	+	87007395,87046165,87046694,87084119,87089983,87091792,87094914,87105627,87105807,87108158,87114366,87125036,87126098,87126235,87126270,87127025,87127642,87131082,87131792,87132270,87134470,87135579,87135600	87007424,87046286,87047594,87084164,87090070,87091829,87094969,87105682,87105845,87108315,87115299,87125143,87126234,87126268,87126336,87127117,87127703,87131219,87131864,87132408,87134694,87135599,87135701	0.631579
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	76561320	76561357	76561320	+	High_confidence	240	248	429	20.971951	6.253223	chr6	76561026	76561425	LTR|ERV1|LTR7	+	chr6	76561327	76562590	AL591030.1|ENST00000626131.1	+	76561327,76562303	76561667,76562590	0.769231
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	176324993	176325002	176325001	-	RAMPAGE_only	98	98	147	7.186193	4.599217	chr3	176323953	176326910	LTR|ERV1|HERVH-int	-	chr3	176284301	176327180	MSTRG.37639.1	-	176284301,176318427,176324812,176327074	176288029,176322018,176325000,176327180	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	120703064	120703065	120703064	-	High_confidence	233	236	259	12.661387	5.394197	chr5	120702960	120703411	LTR|ERV1|LTR7	-	chr5	120692571	120703047	MSTRG.42919.1	-	120692571,120702278	120702257,120703047	0.976834
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	125694378	125694397	125694396	-	RAMPAGE_only	4	4	11	0.537742	2.921928	chr6	125694353	125695121	LINE|L1|L1MB7	+	chr6	125681551	125707408	MSTRG.46655.2	-	125681551,125694166,125707165	125689646,125694398,125707408	0.818182
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	94607931	94608019	94607952	+	RAMPAGE_only	12	12	75	3.666425	3.717080	chr10	94607719	94608017	SINE|Alu|AluSx	-	chr10	94596879	94613905	MSTRG.6740.17	+	94596879,94601527,94609267	94597111,94609008,94613905	0.986667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	35403475	35403539	35403538	+	RAMPAGE_only	8	8	39	1.906541	4.609389	chr22	35403549	35403658	SINE|MIR|MIRb	+	chr22	35400430	35410872	MCM5|ENST00000444778.1	+	35400430,35403517,35406552,35408407,35410743	35400498,35403542,35406725,35408563,35410872	0.564103
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	53834076	53834091	53834090	+	RAMPAGE_only	7	7	23	1.124370	3.236186	chr19	53831856	53835005	LTR|ERV1|HERVH-int	+	chr19	53831403	53837782	MSTRG.26570.1	+	53831403,53833874	53832002,53837782	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	12624979	12625011	12624999	+	High_confidence	108	141	334	16.327812	6.796122	chr5	12624301	12625903	LTR|ERVL-MaLR|MSTA-int	+	chr5	12624935	12629168	MSTRG.41075.1	+	12624935	12629168	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	73736756	73736757	73736756	-	High_confidence	21	21	21	1.026599	2.874493	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73729889	73737335	MSTRG.28114.5	-	73729889,73730559,73732162,73734428,73737301	73730029,73730736,73732285,73734588,73737335	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	8790221	8790223	8790222	+	RAMPAGE_only	5	9	12	0.586628	3.022055	chr12	8788668	8793938	LTR|ERV1|HERV9NC-int	+	chr12	8788273	8795789	AC092490.1|ENST00000514568.2	+	8788273,8794304	8788760,8795789	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	244652013	244652045	244652030	-	High_confidence	8	9	35	1.710998	4.629004	chr1	244651808	244652213	LINE|L2|L2a	+	chr1	244598050	244651850	MSTRG.4971.1	-	244598050,244615853,244651436	244598190,244615948,244651850	0.828571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	127653767	127653786	127653785	+	RAMPAGE_only	4	4	10	0.488857	2.521928	chr9	127653827	127654016	LINE|L2|L2b	+	chr9	127651623	127684513	STXBP1|ENST00000647107.1	+	127651623,127653714,127658374,127660029,127661101,127663204,127665246,127666165,127668079,127669897,127672050,127673180,127675803,127676643,127678430,127680156,127682405,127683917,127684367	127651652,127653796,127658451,127660108,127661205,127663353,127665331,127666296,127668187,127669958,127672116,127673261,127675942,127676753,127678532,127680242,127682560,127683970,127684513	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	151808956	151809040	151809037	+	RAMPAGE_only	41	43	156	7.626164	5.814804	chr5	151808898	151809206	SINE|Alu|AluJr	+	chr5	151771909	151812785	G3BP1|ENST00000394123.7	+	151771909,151786602,151790322,151790888,151794158,151795478,151797226,151799211,151799888,151800217,151800759,151803884	151772036,151786715,151790404,151791062,151794249,151795575,151797428,151799313,151800000,151800346,151800869,151812785	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrY	5327990	5328021	5328020	+	RAMPAGE_only	7	8	21	1.026599	3.884184	chrY	5327119	5329975	LTR|ERV1|HERVH-int	-	chrY	5056089	5742228	PCDH11Y|NM_032973.2	+	5056089,5098214,5501056,5581774,5737271	5057459,5100707,5501255,5581798,5742228	0.714286
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	2772221	2772227	2772221	-	RAMPAGE_only	5	5	10	0.488857	2.725481	chr9	2771967	2772549	LINE|CR1|L3	+	chr9	2770632	2778303	MSTRG.52965.1	-	2770632	2778303	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	8681564	8681603	8681599	+	High_confidence	34	40	71	3.470882	5.525502	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.690141
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	115030664	115030668	115030667	+	RAMPAGE_only	8	8	13	0.635514	2.855389	chr7	115025114	115031115	LINE|L1|L1PA2	-	chr7	115078957	115126314	LINC01393|NR_120521.1	+	115078957,115118732,115122177,115125442	115079109,115118825,115122247,115126314	0.692308
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	133895048	133895078	133895077	+	High_confidence	6	6	15	0.733285	3.521641	chr7	133889425	133895455	LINE|L1|L1PA2	-	chr7	133895062	133937956	EXOC4|ENST00000472020.1	+	133895062,133895598,133917582,133937890	133895195,133895735,133917738,133937956	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	68882879	68882881	68882880	-	High_confidence	56	88	111	5.426309	5.363289	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.945946
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	38998229	38998230	38998229	-	High_confidence	8	8	10	0.488857	2.721928	chr22	38998074	38999144	LTR|ERVK|MER11C	-	chr22	38991558	38998220	APOBEC3B-AS1|NR_104187.1	-	38991558,38992397,38992937,38997480,38998085	38991618,38992581,38993003,38997737,38998220	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	95837548	95837618	95837548	+	High_confidence	11	21	101	4.937452	5.415756	chr7	95831968	95837992	LINE|L1|L1PA3	-	chr7	95837617	96028321	DYNC1I1|ENST00000519371.1	+	95837617,95869882,95977511,95984814,95987055,95995947,96028174	95837649,95869998,95977601,95984977,95987155,95996073,96028321	0.772277
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	6200841	6200879	6200859	-	High_confidence	142	143	556	27.180430	5.114446	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.980216
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	76648867	76648879	76648867	-	RAMPAGE_only	25	25	117	5.719623	5.592799	chr15	76648605	76649248	LTR|ERV1|LTR9D	+	chr15	76434259	76665658	SCAPER|ENST00000564757.5	-	76434259,76471211,76504858,76567269,76574157,76621763,76665652	76434310,76471335,76504974,76567405,76574284,76621829,76665658	0.769231
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	9792262	9792284	9792262	-	High_confidence	3	3	10	0.488857	3.169925	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	72363490	72363509	72363499	-	High_confidence	3	3	10	0.488857	3.169925	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.900000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	61767741	61767775	61767774	+	RAMPAGE_only	3	3	8	0.391085	2.500000	chr4	61766613	61769540	LTR|ERV1|HERVH-int	-	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.625000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	17282813	17282814	17282813	+	RAMPAGE_only	4	6	7	0.342200	2.584963	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.571429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	12183997	12184038	12183997	-	RAMPAGE_only	6	6	20	0.977713	3.826875	chr12	12183981	12184016	LINE|RTE-BovB|MamRTE1	-	chr12	12116028	12244304	LRP6|ENST00000538239.5	-	12116028,12120369,12121085,12124564,12125295,12126690,12130782,12131820,12135174,12138324,12147365,12148941,12150835,12158828,12159779,12162192,12164272,12165078,12179809,12181042,12183979,12186922,12203202,12244261	12119330,12120403,12121420,12124662,12125432,12126921,12130893,12132057,12135300,12138534,12147556,12149153,12151038,12159155,12159964,12162419,12164562,12165295,12179981,12181439,12184111,12187119,12203400,12244304	0.950000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	109329482	109329484	109329482	-	RAMPAGE_only	5	9	11	0.537742	2.732159	chr3	109329254	109329555	SINE|Alu|AluY	+	chr3	109326852	109330760	DPPA4|ENST00000475135.1	-	109326852,109328889	109328024,109330760	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	40271258	40271291	40271284	+	RAMPAGE_only	6	11	32	1.564341	3.987301	chr20	40269505	40272453	LTR|ERV1|HERVH-int	+	chr20	40269405	40274720	MSTRG.32030.4	+	40269405,40274362	40271601,40274720	0.781250
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	58136154	58136155	58136154	+	RAMPAGE_only	13	13	18	0.879942	3.572469	chr3	58136192	58136456	SINE|MIR|MIRb	+	chr3	58132077	58172251	FLNB|ENST00000481470.5	+	58132077,58134615,58135978,58138281,58142649,58143472,58145920,58146819,58148205,58148648,58149849,58150104,58153374,58154790,58155959,58159553,58163153,58168439,58170574	58132931,58134772,58136168,58138529,58142752,58143613,58146049,58146993,58148364,58148852,58150002,58150227,58153641,58154928,58156075,58159686,58163330,58169793,58172251	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	18165592	18165593	18165592	+	RAMPAGE_only	18	18	26	1.271027	2.884314	chr22	18165414	18165598	LTR|ERV1|LTR36	+	chr22	18149990	18177397	USP18|NM_017414.3	+	18149990,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.615385
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	111841642	111841644	111841643	-	High_confidence	7	11	12	0.586628	2.845351	chr12	111841557	111841731	SINE|MIR|MIRb	+	chr12	111839776	111841710	MAPKAPK5-AS1|ENST00000590479.5	-	111839776,111840332,111841326,111841683	111840003,111840477,111841470,111841710	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	131310461	131310462	131310461	+	High_confidence	8435	8602	9734	475.853072	6.917353	chr8	131310174	131310564	LTR|ERV1|LTR7	+	chr8	131310471	131317506	AC104257.1|ENST00000519005.1	+	131310471,131312555,131315759,131317333	131310712,131312748,131315883,131317506	0.916992
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	179170221	179170222	179170221	-	High_confidence	8884	9002	9744	476.341929	5.035460	chr4	179170119	179170568	LTR|ERV1|LTR7	-	chr4	179162730	179170261	MSTRG.40712.1	-	179162730	179170261	0.967672
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	114585936	114585995	114585994	+	High_confidence	13	13	94	4.595253	5.256134	chr8	114580378	114586371	LINE|L1|L1PA8	-	chr8	114585883	114649118	MSTRG.52402.1	+	114585883,114597954,114648375	114586396,114598043,114649118	0.691489
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	215922650	215922666	215922651	+	High_confidence	65	121	199	9.728248	6.253032	chr2	215922302	215922755	LTR|ERV1|LTR7	+	chr2	215922657	215929519	MSTRG.30745.1	+	215922657,215927663	215922903,215929519	0.733668
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	92277301	92277302	92277301	-	High_confidence	6201	6252	7636	373.290945	7.230639	chr4	92277197	92277648	LTR|ERV1|LTR7	-	chr4	92240578	92277301	MSTRG.39490.1	-	92240578,92257852,92272610,92277049	92241265,92272573,92274961,92277301	0.839314
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	109329346	109329349	109329346	-	RAMPAGE_only	3	4	7	0.342200	2.521641	chr3	109329254	109329555	SINE|Alu|AluY	+	chr3	109326852	109330760	DPPA4|ENST00000475135.1	-	109326852,109328889	109328024,109330760	0.714286
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	106285341	106285344	106285343	-	High_confidence	9	16	24	1.173256	4.084963	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106248284	106285192	NAMPT|NM_005746.2	-	106248284,106253016,106254363,106261587,106263391,106268463,106269153,106272529,106274945,106277022,106284827	106251193,106253151,106254504,106261707,106263617,106268600,106269312,106272658,106275049,106277179,106285192	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	114427950	114427951	114427950	-	High_confidence	2507	2547	2622	128.178216	6.339232	chr6	114427846	114428297	LTR|ERV1|LTR7	-	chr6	114400515	114427944	MSTRG.46510.2	-	114400515,114425540	114402272,114427944	0.955759
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	46557395	46557396	46557395	+	High_confidence	9	10	14	0.684399	3.182006	chr3	46557049	46557496	LTR|ERV1|LTR7	+	chr3	46557397	46559688	LRRC2-AS1|ENST00000599511.1	+	46557397	46559688	0.642857
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	6737395	6737415	6737414	+	High_confidence	6	6	14	0.684399	2.815072	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	85317994	85318060	85318043	+	High_confidence	9	12	63	3.079797	5.197607	chr12	85312419	85318459	LINE|L1|L1PA2	-	chr12	85318059	85342912	AC131532.1|ENST00000555596.1	+	85318059,85318957,85342471	85318115,85318979,85342912	0.587302
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	77593205	77593309	77593262	-	High_confidence	18	25	184	8.994963	6.202945	chr2	77592831	77598845	LINE|L1|L1PA3	+	chr2	77511623	77593319	MSTRG.28310.4	-	77511623,77521667,77552546,77592814	77519864,77521818,77552656,77593319	0.652174
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	4892030	4892063	4892030	+	High_confidence	10	10	35	1.710998	3.936892	chrX	4892066	4894984	LTR|ERV1|HERVH-int	+	chrX	4891736	4899632	MSTRG.55494.1	+	4891736	4899632	0.971429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	154187253	154187260	154187259	-	RAMPAGE_only	8	14	33	1.613227	4.392583	chr1	154187222	154187332	DNA|hAT-Charlie|MER58A	-	chr1	154172066	154183816	TPM3|ENST00000368527.7	-	154172066,154172907,154173083,154176114,154183608	154172104,154172978,154173201,154176248,154183816	0.787879
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	136410191	136410192	136410191	-	High_confidence	6	6	9	0.439971	2.947703	chr9	136410152	136410213	LINE|L2|L2c	-	chr9	136404109	136410501	MSTRG.55314.10	-	136404109,136404630,136405090,136405904,136407144,136407825,136408998,136410327	136404194,136404693,136405202,136405978,136407561,136407938,136410239,136410501	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	65570509	65570540	65570519	+	High_confidence	29	38	147	7.186193	6.106664	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.693878
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	77710888	77710889	77710888	+	High_confidence	137	163	163	7.968364	3.544597	chr14	77710914	77711213	LINE|L1|L1MA1	+	chr14	77710643	77717584	SLIRP|ENST00000556956.1	+	77710643,77715771,77717495	77710896,77715879,77717584	0.926380
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147559948	147559994	147559993	+	High_confidence	388	389	799	39.059647	6.474242	chr5	147559899	147560053	DNA|hAT-Charlie|MER5A1	-	chr5	147559993	147662009	JAKMIP2-AS1|NR_038902.1	+	147559993,147594359,147595439,147660452	147560137,147594477,147595540,147662009	0.760951
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	112646237	112646266	112646245	+	RAMPAGE_only	3	5	13	0.635514	3.251629	chr4	112645995	112646266	SINE|Alu|AluSx3	-	chr4	112637455	112657592	LARP7|NM_015454.2	+	112637455,112644667,112646350,112646587,112646790,112647033,112647198,112647689,112649534,112650460,112653076,112654067,112657246	112637603,112644871,112646451,112646671,112646955,112647127,112647549,112647834,112649686,112650582,112653236,112654159,112657592	0.923077
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	43120134	43120158	43120147	+	High_confidence	14	19	52	2.542055	4.822527	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43120407	43121317	MSTRG.1251.1	+	43120407	43121317	0.576923
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	71586744	71586805	71586796	+	High_confidence	4	4	21	1.026599	3.535175	chr5	71586450	71587046	LTR|ERV1|MER51A	-	chr5	71587287	71657215	MCCC2|ENST00000512218.6	+	71587287,71592925,71596279,71599658,71602505,71604355,71632120,71634942,71635150,71641002,71643770,71646210,71649096,71650068,71652668,71656742	71587554,71592992,71596364,71599760,71602633,71604468,71632185,71635042,71635246,71641083,71643895,71646277,71649253,71650183,71652754,71657215	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	33945809	33945810	33945809	-	RAMPAGE_only	22	22	22	1.075485	3.277613	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	7878325	7878381	7878354	+	High_confidence	10	10	65	3.177568	5.251964	chr2	7875014	7878438	LTR|ERV1|HERVH-int	-	chr2	7878002	7893848	MSTRG.26957.1	+	7878002,7883431,7891272	7878481,7883559,7893848	0.830769
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	36578936	36578960	36578959	+	RAMPAGE_only	3	5	9	0.439971	3.000000	chr20	36578989	36579130	SINE|MIR|MIR3	+	chr20	36574671	36591429	TGIF2|ENST00000560025.1	+	36574671,36578740,36590909	36574848,36578966,36591429	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	2815226	2815230	2815229	-	High_confidence	8	8	15	0.733285	3.139572	chr7	2815041	2815430	LINE|L2|L2a	-	chr7	2728104	2815259	GNA12|NM_001282441.1	-	2728104,2733450,2794927,2814311,2814876	2731750,2733501,2795143,2814389,2815259	0.600000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	6323580	6323627	6323626	+	RAMPAGE_only	12	12	30	1.466570	4.047299	chr11	6323227	6323895	LTR|ERV1|LTR9A1	-	chr11	6319140	6346309	AC068733.3|ENST00000649129.1	+	6319140,6323584,6323893,6330240,6333615,6342253,6344415	6319697,6323692,6324035,6330465,6333708,6342391,6346309	0.866667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	156255004	156255015	156255008	-	High_confidence	3	3	14	0.684399	3.238901	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156190355	156255059	MSTRG.29499.11	-	156190355,156203340,156227966,156251662	156203315,156205438,156228004,156255059	0.571429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	150641682	150641683	150641682	+	High_confidence	52	53	75	3.666425	5.845420	chr1	150641375	150641787	LTR|ERV1|LTR7	+	chr1	150641693	150647895	MSTRG.3040.1	+	150641693	150647895	0.680000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	10916708	10916760	10916738	+	RAMPAGE_only	7	7	20	0.977713	3.826875	chr19	10916771	10916976	SINE|MIR|MIR	+	chr19	10918985	10920870	CARM1|ENST00000586508.1	+	10918985,10919876,10920435,10920658,10920833	10919680,10919966,10920573,10920748,10920870	0.600000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	103395864	103395880	103395864	-	High_confidence	2	2	8	0.391085	2.521641	chr10	103395615	103395992	LINE|RTE-X|L4_C_Mam	+	chr10	103389049	103396074	ATP5MD|ENST00000369811.5	-	103389049,103392190,103392370,103395745	103389166,103392283,103392466,103396074	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	154821014	154821042	154821014	-	High_confidence	11	12	33	1.613227	4.631616	chrX	154820857	154821355	LTR|ERV1|MER4-int	-	chrX	154784030	154821007	MPP1|ENST00000393529.5	-	154784030,154785050,154786203,154789953,154790982,154791768,154792141,154820973	154784108,154785157,154786400,154790022,154791068,154791847,154792285,154821007	0.606061
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	122913010	122913017	122913010	-	High_confidence	2	2	7	0.342200	2.521641	chr9	122912996	122913067	LINE|L2|L2b	+	chr9	122908055	122913328	ZBTB6|NM_006626.5	-	122908055,122913250	122912081,122913328	0.714286
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	8681673	8681677	8681676	+	High_confidence	12	12	22	1.075485	4.061482	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.863636
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	186247321	186247322	186247321	-	High_confidence	540	585	619	30.260227	6.367870	chr4	186247216	186247584	LTR|ERV1|LTR7	-	chr4	186241940	186247305	MSTRG.40841.2	-	186241940,186245315,186247070	186242329,186245478,186247305	0.631664
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	137576371	137576372	137576371	-	RAMPAGE_only	9	12	12	0.586628	2.855389	chr9	137576275	137576455	DNA|TcMar-Tigger|Tigger3c	-	chr9	137574263	137578875	DPH7|ENST00000476303.1	-	137574263,137574751,137575708,137578624	137574380,137574846,137576167,137578875	0.916667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	169636630	169636649	169636630	+	High_confidence	3	3	8	0.391085	2.521641	chr5	169636448	169636755	SINE|Alu|AluSp	+	chr5	169637246	170083382	DOCK2|NM_004946.2	+	169637246,169654402,169669287,169670541,169671077,169674296,169681743,169684195,169689251,169695802,169698373,169699381,169700013,169702302,169708168,169711934,169712119,169714027,169714359,169716212,169717383,169718656,169747395,169759704,169761518,169803057,169840756,169983067,169985827,169996085,170008496,170008687,170018959,170027862,170034398,170036514,170041054,170042012,170045815,170047509,170050255,170055304,170056683,170057579,170067509,170069136,170075946,170077709,170078974,170080162,170081841,170082795	169637369,169654486,169669328,169670597,169671174,169674445,169681879,169684350,169689333,169695938,169698449,169699458,169700139,169702427,169708267,169712007,169712223,169714211,169714457,169716302,169717484,169718791,169747504,169759775,169761625,169803206,169840852,169983166,169985922,169996164,170008597,170008746,170019108,170027948,170034555,170036555,170041145,170042132,170045905,170047614,170050397,170055386,170056768,170057666,170067686,170069220,170076084,170077837,170079146,170080283,170081984,170083382	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	40954688	40954730	40954700	+	High_confidence	82	82	213	10.412647	6.569331	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954518	40990524	MSTRG.15550.2	+	40954518,40962789,40974339,40976336	40954952,40962842,40976276,40990524	0.591549
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	17290628	17290658	17290647	+	RAMPAGE_only	8	9	27	1.319913	4.458591	chr9	17285003	17291034	LINE|L1|L1PA2	-	chr9	17135039	17503923	MSTRG.53217.3	+	17135039,17143287,17226202,17235657,17236408,17273732,17298189,17309057,17330631,17332604,17340826,17342324,17366616,17388161,17394533,17409295,17415787,17415965,17457523,17462915,17464496,17465980,17466705,17484294,17486988,17502550	17135425,17143376,17226287,17235792,17236588,17273866,17298352,17309252,17330808,17332730,17340948,17342444,17366717,17388253,17395069,17409473,17415881,17416189,17457715,17463013,17464623,17466118,17466891,17484480,17487066,17503923	0.851852
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	155305601	155305605	155305601	-	RAMPAGE_only	4	5	10	0.488857	3.121928	chrX	155299575	155305601	LINE|L1|L1PA2	-	chrX	155279268	155334427	CLIC2|ENST00000491205.1	-	155279268,155279961,155298784,155299035,155309571,155334370	155279330,155280068,155298910,155299145,155309625,155334427	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	94704114	94704133	94704119	-	RAMPAGE_only	3	3	13	0.635514	2.855389	chrX	94701137	94704174	LTR|ERV1|HERVH-int	-	chrX	94680013	94698988	MSTRG.56878.4	-	94680013,94683265,94697895	94683153,94697520,94698988	0.538462
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	131579064	131579123	131579122	-	High_confidence	23	27	94	4.595253	4.109605	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.861702
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	57112666	57112677	57112666	-	High_confidence	7	7	23	1.124370	3.689704	chr14	57112210	57118214	LINE|L1|L1PA2	+	chr14	57067007	57112660	AL391152.1|ENST00000551408.2	-	57067007,57112194	57067165,57112660	0.695652
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	215922544	215922590	215922589	+	High_confidence	6	6	24	1.173256	3.299896	chr2	215922302	215922755	LTR|ERV1|LTR7	+	chr2	215922657	215929519	MSTRG.30745.1	+	215922657,215927663	215922903,215929519	0.916667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	67331812	67331849	67331813	+	High_confidence	699	1191	3226	157.705158	6.534293	chr2	67331516	67331914	LTR|ERV1|LTR7	+	chr2	67331761	67343461	MSTRG.28003.5	+	67331761,67333952,67337008	67332062,67334150,67343461	0.893986
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	20123240	20123241	20123240	-	RAMPAGE_only	8	9	9	0.439971	2.750000	chr7	20121168	20124011	LTR|ERV1|HERVH-int	+	chr7	19931070	20125162	AC005062.1|ENST00000415499.5	-	19931070,19960921,19968136,20028918,20045502,20125079	19931298,19960994,19968395,20028959,20045561,20125162	0.555556
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	115647977	115647997	115647985	+	RAMPAGE_only	4	5	16	0.782171	3.456565	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.937500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	64226142	64226180	64226142	-	High_confidence	52	52	258	12.612502	6.343268	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64224758	64226141	TRPT1|ENST00000542040.1	-	64224758,64226049	64225580,64226141	0.720930
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	25115409	25115441	25115418	+	RAMPAGE_only	7	11	28	1.368799	3.825252	chr15	25115166	25115549	LTR|ERVL|MER54A	+	chr15	25116544	25120051	SNHG14|ENST00000626200.2	+	25116544,25118267,25119064	25117515,25118382,25120051	0.607143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	39422938	39422992	39422938	-	RAMPAGE_only	19	21	33	1.613227	4.476064	chr13	39422758	39423139	LTR|ERVL-MaLR|THE1C	-	chr13	39342891	39603171	LHFPL6|ENST00000379589.3	-	39342891,39378427,39600831,39602882	39344054,39378526,39601390,39603171	0.878788
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	58927658	58927675	58927662	+	High_confidence	3	3	10	0.488857	3.169925	chr11	58927656	58928383	LTR|ERVK|HERVK22-int	-	chr11	58927634	58955313	GLYATL1|ENST00000526351.5	+	58927634,58942539,58943542,58947045,58947857,58954769,58955175	58927829,58942584,58943666,58947068,58947965,58954896,58955313	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	13873153	13873192	13873191	-	RAMPAGE_only	5	5	9	0.439971	2.750000	chr21	13872976	13873739	LTR|ERVL-MaLR|THE1D-int	-	chr21	13872050	13897129	MSTRG.32508.1	-	13872050,13894138	13874584,13897129	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	16712889	16712959	16712889	-	High_confidence	25	26	133	6.501794	5.670365	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.902256
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	176943365	176943380	176943365	-	RAMPAGE_only	5	5	18	0.879942	3.350209	chr5	176943235	176943320	DNA|hAT-Charlie|Charlie10	-	chr5	176905065	176970793	UIMC1|ENST00000510698.2	-	176905065,176906010,176907113,176908522,176911310,176943334,176951473,176955958,176958092,176969600,176970741	176905492,176906047,176907177,176908694,176911389,176943488,176951577,176956035,176958154,176969706,176970793	0.944444
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	47695699	47695721	47695720	+	High_confidence	6	6	14	0.684399	2.623517	chr2	47695601	47695914	SINE|Alu|AluY	-	chr2	47695815	47757793	MSH6|ENST00000454137.5	+	47695815,47708208,47737390,47757688	47696097,47708430,47737506,47757793	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	129333905	129333947	129333946	+	High_confidence	2	3	8	0.391085	3.000000	chr9	129333713	129334014	LINE|L2|L2b	+	chr9	129333905	129347399	LINC01503|ENST00000436710.5	+	129333905,129338791,129341735,129347225	129334198,129338917,129342043,129347399	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	52570267	52570324	52570278	+	RAMPAGE_only	6	10	25	1.222142	3.813661	chr13	52569964	52570306	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.560000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	102947730	102947754	102947730	-	RAMPAGE_only	2	3	8	0.391085	2.807355	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	92103671	92103691	92103690	-	RAMPAGE_only	31	42	73	3.568654	4.169499	chrX	92102573	92105434	LTR|ERV1|HERVH-int	-	chrX	92098887	92105580	MSTRG.56850.1	-	92098887,92105292	92104306,92105580	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	139364701	139364719	139364701	+	RAMPAGE_only	4	4	22	1.075485	3.390805	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	39154613	39154673	39154613	-	High_confidence	8	8	29	1.417684	3.978334	chr3	39154504	39154649	LINE|L2|L2c	+	chr3	39141850	39154602	CSRNP1|NM_001320560.1	-	39141850,39144136,39144996,39146477,39154496	39144044,39144451,39145256,39146722,39154602	0.931034
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	129208604	129208620	129208619	+	RAMPAGE_only	6	6	17	0.831056	3.734522	chr9	129208534	129208778	LINE|L2|L2c	+	chr9	129201314	129209186	AL158151.1|ENST00000451229.1	+	129201314,129208868	129201555,129209186	0.529412
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	187995728	187995788	187995775	+	High_confidence	113	146	556	27.180430	6.395011	chr4	187995806	187995869	DNA|hAT-Charlie|MER112	+	chr4	187995770	188005050	ZFP42|NM_174900.4	+	187995770,187999107,187999608,188002712	187995840,187999273,187999685,188005050	0.949640
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	123884239	123884250	123884249	-	High_confidence	3	3	7	0.342200	2.521641	chr3	123883879	123884307	LINE|L1|L1M4b	+	chr3	123612295	123884302	MYLK|NM_053025.3	-	123612295,123618638,123620206,123626817,123629473,123638070,123640286,123647223,123648970,123649161,123657125,123664104,123666218,123667136,123682223,123692734,123700019,123701437,123707753,123708697,123709755,123722127,123725943,123732895,123733686,123735397,123737377,123738896,123739952,123752330,123793676,123831547,123876558,123884205	123614349,123618770,123620336,123626941,123629626,123638194,123640504,123647427,123649064,123649194,123657428,123664258,123666346,123667187,123682310,123692851,123701005,123701509,123708003,123708895,123709893,123722280,123726078,123733102,123734222,123735416,123737543,123739062,123740001,123752538,123793844,123831670,123876617,123884302	0.571429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	12483237	12483267	12483237	+	RAMPAGE_only	6	6	21	1.026599	3.653757	chr8	12482852	12483917	LTR|ERVK|MER11C	-	chr8	12437204	12566398	MSTRG.50834.1	+	12437204,12438163,12440968,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566398	0.714286
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	118729899	118729900	118729899	-	High_confidence	11	11	16	0.782171	2.872906	chr11	118729206	118730174	LTR|ERVK|LTR5_Hs	-	chr11	118720206	118729365	MSTRG.9976.1	-	118720206,118729098	118722075,118729365	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	14341841	14341894	14341892	-	High_confidence	6	11	30	1.466570	4.548394	chr11	14341798	14341986	LINE|L1|L1ME3E	-	chr11	14279396	14342094	RRAS2|ENST00000531807.5	-	14279396,14281601,14294470,14294759,14295767,14341809	14279424,14281720,14294579,14294862,14295855,14342094	0.700000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	103742678	103742712	103742688	+	High_confidence	8	11	30	1.466570	4.423252	chrX	103742658	103742960	SINE|Alu|AluJb	-	chrX	103742591	103786990	MSTRG.57038.4	+	103742591,103750685,103774216,103776852,103785581,103786464	103743107,103754498,103774362,103776999,103785768,103786990	0.633333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	187999614	187999615	187999614	+	RAMPAGE_only	6	6	9	0.439971	2.750000	chr4	187999613	187999838	LINE|L2|L2b	-	chr4	188002707	188005045	ZFP42|ENST00000618147.1	+	188002707	188005045	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	88455451	88455507	88455466	-	RAMPAGE_only	7	7	54	2.639826	4.151799	chr4	88455224	88455618	LTR|ERV1|MER61C	-	chr4	88415842	88442553	MSTRG.39437.1	-	88415842,88419301,88419573,88420355,88442440	88416079,88419408,88419712,88420428,88442553	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	9140393	9140428	9140427	+	High_confidence	45	45	152	7.430621	5.777614	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140428	9157710	ZNF317|ENST00000419608.2	+	9140428,9156611,9157267	9140592,9156748,9157710	0.532895
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	124355447	124355448	124355447	-	RAMPAGE_only	15	18	18	0.879942	3.836592	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124346592	124402566	MSTRG.13280.19	-	124346592,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124378236,124385744,124398118,124400500,124402403	124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356803,124362294,124363799,124372610,124378384,124385887,124398181,124400673,124402566	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	231072241	231072383	231072241	+	RAMPAGE_only	10	13	114	5.572966	5.805990	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.991228
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	178860325	178860394	178860366	-	High_confidence	25	28	132	6.452908	5.791291	chr3	178859948	178865979	LINE|L1|L1PA2	+	chr3	178526504	178860352	KCNMB2-AS1|ENST00000437488.5	-	178526504,178535713,178537260,178748403,178749045,178757079,178859488,178860293	178526625,178535899,178537396,178748485,178749236,178757133,178859623,178860352	0.727273
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	68406174	68406262	68406190	+	High_confidence	73	74	165	8.066135	5.611961	chr4	68405893	68406295	LTR|ERV1|LTR7	+	chr4	68406199	68420948	MSTRG.39085.2	+	68406199,68420250	68409823,68420948	0.969697
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	76495921	76495922	76495921	+	RAMPAGE_only	17	17	20	0.977713	3.584184	chr5	76495557	76495968	LTR|ERVL-MaLR|MSTB	-	chr5	76547408	76708132	IQGAP2|NM_001285460.1	+	76547408,76562395,76570579,76575692,76588905,76589614,76590407,76592837,76597438,76600811,76606178,76611019,76627409,76631858,76637033,76640932,76652749,76654199,76654933,76658458,76665025,76668680,76671758,76673448,76673951,76674476,76677217,76683114,76683775,76693354,76695453,76697986,76701075,76702481,76707199	76547451,76562552,76570657,76575769,76588973,76589728,76590586,76592925,76597602,76600972,76606303,76611183,76627500,76632026,76637176,76641103,76652833,76654271,76655003,76658667,76665175,76668844,76671983,76673589,76674036,76674709,76677350,76683217,76683917,76693442,76695666,76698147,76701213,76702590,76708132	0.900000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	212887618	212887637	212887618	+	RAMPAGE_only	7	8	16	0.782171	3.030639	chr1	212887403	212887622	LINE|L2|L2c	-	chr1	212858915	212895334	FLVCR1|ENST00000419102.1	+	212858915,212863724,212883370,212885292,212887890,212888488,212889145,212894985,212895215	212859190,212863869,212883438,212885396,212888001,212888594,212889257,212895053,212895334	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	49789498	49789519	49789498	-	RAMPAGE_only	4	4	12	0.586628	2.855389	chr14	49789398	49789451	LINE|L2|L2a	-	chr14	49784904	49787174	NEMF|ENST00000554275.1	-	49784904,49786717	49785320,49787174	0.916667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	100268205	100268281	100268280	+	RAMPAGE_only	65	67	170	8.310563	4.085733	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266288	100292769	MSTRG.2472.5	+	100266288,100266523,100268151,100270556,100273393,100274823,100275602,100277257,100285227,100287098,100291402	100266420,100266624,100268295,100270680,100273452,100274969,100275723,100277316,100285322,100287203,100292769	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	33021454	33021455	33021454	-	RAMPAGE_only	136	158	159	7.772821	4.878772	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.930818
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	69325891	69325892	69325891	-	RAMPAGE_only	7	10	11	0.537742	2.646439	chr16	69325747	69325942	DNA|hAT-Charlie|MER102b	+	chr16	69322003	69339583	MSTRG.20412.4	-	69322003,69325475,69330812,69330879,69332713,69334520,69336504,69339175	69325407,69329179,69330843,69331095,69332882,69335348,69336712,69339583	0.818182
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	155073392	155073393	155073392	+	RAMPAGE_only	16	19	23	1.124370	2.713216	chrX	155073000	155073435	DNA|TcMar-Tigger|Tigger20a	-	chrX	155071531	155123036	BRCC3|ENST00000453705.1	+	155071531,155073373,155077169,155078615,155089262,155090783,155116056,155116710,155119998,155121222	155071654,155073431,155077289,155078703,155089351,155090839,155116188,155116754,155120168,155123036	0.913043
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	64293377	64293380	64293379	-	High_confidence	19	42	46	2.248741	4.711422	chr12	64287349	64293377	LINE|L1|L1PA2	-	chr12	64266982	64293383	C12orf56|ENST00000536975.5	-	64266982,64270535,64274900,64275297,64277679,64284663,64285953,64293280	64267288,64270714,64274975,64275372,64277803,64284753,64286060,64293383	0.847826
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrY	12686530	12686531	12686530	+	RAMPAGE_only	170	170	173	8.457220	5.088864	chrY	12685409	12686624	LTR|ERV1|MER4-int	+	chrY	12701230	12860839	USP9Y|ENST00000338981.7	+	12701230,12708633,12709387,12720588,12722107,12725112,12726574,12735611,12735997,12736410,12738156,12739524,12757191,12758505,12760483,12771067,12773582,12775470,12776648,12778018,12778605,12779525,12786202,12786521,12790406,12791498,12793031,12810178,12810671,12811634,12812829,12816123,12818419,12833687,12837910,12839863,12841009,12842239,12843063,12846332,12846932,12847238,12856339,12856632,12857565,12859278	12702055,12708693,12709543,12720737,12722187,12725225,12726793,12735727,12736249,12736549,12738309,12739629,12757398,12758642,12760617,12771155,12773925,12775566,12776860,12778259,12778755,12779646,12786333,12786800,12790532,12791624,12793201,12810287,12810818,12811781,12813052,12816344,12818610,12833861,12838052,12840614,12841133,12842465,12843193,12846518,12847153,12847327,12856496,12856845,12857661,12860839	0.809249
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	232118399	232118417	232118399	+	High_confidence	4	4	8	0.391085	2.750000	chr1	232118114	232118565	LTR|ERV1|LTR7	+	chr1	232118456	232150070	MSTRG.4642.2	+	232118456,232120627,232123487	232118713,232120729,232150070	0.625000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	179168797	179168798	179168797	-	RAMPAGE_only	10	10	10	0.488857	2.521928	chr4	179167323	179170117	LTR|ERV1|HERVH-int	-	chr4	179162730	179170261	MSTRG.40712.1	-	179162730	179170261	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	179051610	179051691	179051610	-	High_confidence	46	46	278	13.590215	6.371381	chr2	179051586	179051988	LTR|ERV1|LTR7	-	chr2	178829756	179051692	MSTRG.30026.18	-	178829756,178836893,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900,178886751,178888526,178905328,178918712,178944534,178961229,178975056,178978483,179047283,179049839,179051558	178834440,178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178885092,178886871,178888668,178905501,178918907,178944651,178961483,178975165,178978675,179047406,179050066,179051692	0.874101
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	94650415	94650443	94650436	+	High_confidence	10	10	40	1.955427	4.653056	chr11	94650207	94650507	LTR|ERV1|MER51B	+	chr11	94650295	94667056	MSTRG.9598.9	+	94650295,94650841	94650537,94667056	0.575000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	70255184	70255219	70255209	+	High_confidence	4	4	19	0.928828	3.536887	chr14	70255023	70256182	LTR|ERV1|LTR12C	+	chr14	70255642	70291859	MSTRG.16133.1	+	70255642,70275295,70291476	70256189,70275360,70291859	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	57451514	57451565	57451562	+	RAMPAGE_only	64	65	209	10.217104	4.881985	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57386222	57550727	MSTRG.17755.6	+	57386222,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57388227,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.990431
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	40954427	40954440	40954427	+	High_confidence	4	4	12	0.586628	2.584963	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954490	41029553	MSTRG.15550.1	+	40954490,40962789,40974339,41025519	40954952,40962842,40974390,41029553	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	176309053	176309285	176309265	-	RAMPAGE_only	12	24	102	4.986338	4.298227	chr3	176309117	176309261	SINE|MIR|MIRc	-	chr3	176298216	176327356	MSTRG.37639.2	-	176298216,176324812,176326764	176322018,176325000,176327356	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	31118984	31119006	31118984	-	High_confidence	6	9	23	1.124370	4.011365	chr12	31118893	31119042	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.913043
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	6590262	6590304	6590285	+	High_confidence	4	4	18	0.879942	3.794653	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.722222
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	3361884	3361885	3361884	-	RAMPAGE_only	12	13	15	0.733285	3.039149	chr11	3361774	3362066	SINE|Alu|AluJb	+	chr11	3358993	3379116	ZNF195|ENST00000005082.13	-	3358993,3361742,3370974,3371576,3379037	3360565,3361889,3371070,3371703,3379116	0.933333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	38789809	38789818	38789812	-	RAMPAGE_only	9	10	28	1.368799	4.450212	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	0.964286
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	20045559	20045560	20045559	-	RAMPAGE_only	16	19	20	0.977713	3.787144	chr7	20045504	20045838	LTR|ERVL|ERV3-16A3_I-int	+	chr7	19918980	19968237	AC005062.1|ENST00000457921.5	-	19918980,19919865,19960921,19968136	19919260,19919977,19960994,19968237	0.600000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	68796484	68796487	68796484	-	High_confidence	56	56	93	4.546367	3.911589	chr14	68796432	68796579	DNA|hAT-Charlie|MER5A	-	chr14	68789944	68796253	ZFP36L1|ENST00000557086.1	-	68789944,68796074	68790492,68796253	0.956989
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	82546441	82546442	82546441	-	RAMPAGE_only	18	18	19	0.928828	3.836592	chr15	82546117	82546394	SINE|Alu|AluSx1	-	chr15	82536749	82540564	RPS17|ENST00000330244.11	-	82536749,82538305,82538879,82539980,82540425	82536881,82538371,82538985,82540132,82540564	0.947368
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	42959048	42959078	42959077	+	High_confidence	21	21	62	3.030911	3.940657	chr1	42959103	42959181	SINE|MIR|MIR3	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.919355
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	11587397	11587475	11587468	-	High_confidence	20	20	117	5.719623	5.122831	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.991453
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	123162608	123162649	123162638	+	RAMPAGE_only	3	3	11	0.537742	3.121928	chr10	123162608	123162659	DNA|hAT-Ac|OldhAT1	-	chr10	123154414	123165365	BUB3|ENST00000368858.9	+	123154414,123154917,123155657,123157728,123160406,123162235,123162611,123165046	123154485,123155112,123155727,123157880,123160565,123162413,123162828,123165365	0.636364
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	88993306	88993337	88993306	+	RAMPAGE_only	7	8	44	2.150969	4.459068	chr15	88993287	88993576	SINE|Alu|AluJb	+	chr15	88997150	88997759	MSTRG.18595.1	+	88997150	88997759	0.545455
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	52661557	52661558	52661557	+	RAMPAGE_only	30	30	31	1.515456	4.389898	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	0.967742
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	64807557	64807559	64807557	-	RAMPAGE_only	10	18	23	1.124370	3.916127	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64804374	64806368	MEN1|ENST00000478548.1	-	64804374,64805033,64805634	64804816,64805198,64806368	0.869565
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	52036985	52037023	52037022	+	High_confidence	22	29	88	4.301939	4.656834	chr10	52036080	52039110	LTR|ERV1|HERVH-int	-	chr10	52036807	52298350	MSTRG.5939.10	+	52036807,52054483,52062536,52133839,52161888,52251569,52271349,52272391,52280788,52282152,52288725,52288930,52290223,52293801	52037112,52054561,52062631,52133905,52161963,52251666,52271489,52272481,52280930,52282316,52288848,52288993,52290290,52298350	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	3795765	3795823	3795822	+	High_confidence	10	10	52	2.542055	4.876566	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.961538
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	93350064	93350089	93350088	-	RAMPAGE_only	8	8	24	1.173256	4.004886	chr9	93348040	93351024	LTR|ERV1|HERVH-int	+	chr9	93317468	93347995	MSTRG.54486.1	-	93317468,93318325,93330195,93335373,93335875,93346073,93346619	93318142,93326708,93330265,93335660,93335976,93346216,93347995	0.625000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	139344535	139344548	139344547	+	High_confidence	100	100	260	12.710273	5.664080	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.930769
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	160226644	160226669	160226644	-	RAMPAGE_only	19	23	37	1.808770	4.308271	chr6	160226457	160226733	LTR|ERV1|MER57B1	+	chr6	160217013	160218284	SLC22A2|ENST00000498556.1	-	160217013,160217893,160218199	160217498,160218058,160218284	0.891892
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	30296179	30296190	30296189	-	RAMPAGE_only	6	7	14	0.684399	3.324863	chr6	30296051	30296310	LTR|ERVL-MaLR|MLT1I	-	chr6	30291005	30326334	HCG18|ENST00000444126.5	-	30291005,30296131,30314268,30326008	30294964,30296237,30314482,30326334	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	74969716	74969735	74969716	+	RAMPAGE_only	3	3	9	0.439971	2.500000	chr10	74969693	74969726	LINE|L2|L2a	-	chr10	74842619	75022125	KAT6B|ENST00000648369.1	+	74842619,74959969,74969659,74970019,74972506,74975398,74977315,74979223,74981786,74985079,75020581,75021125,75021880	74843478,74960078,74969775,74970101,74972639,74976330,74977437,74979339,74981928,74985241,75020813,75021285,75022125	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	23403428	23403436	23403435	-	RAMPAGE_only	7	7	17	0.831056	2.952820	chr19	23403358	23403510	SINE|Alu|AluSz	-	chr19	23399469	23408091	LINC01224|ENST00000596283.5	-	23399469,23402176,23403205,23403719,23404950,23405257,23405999,23407897	23401047,23402512,23403493,23403747,23405108,23405335,23406105,23408091	0.941176
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	143018381	143018395	143018381	-	High_confidence	12	12	20	0.977713	2.695462	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143007752	143018397	LY6E-DT|ENST00000502167.2	-	143007752,143012484,143018159	143009207,143012572,143018397	0.600000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	115475846	115475859	115475846	-	High_confidence	9	9	16	0.782171	3.452820	chr9	115474253	115476760	LTR|ERV1|HERVH-int	+	chr9	115474921	115476026	MSTRG.54873.1	-	115474921,115475945	115475845,115476026	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	112423078	112423097	112423078	-	High_confidence	15	15	25	1.222142	3.513270	chr3	112422913	112423365	LTR|ERV1|LTR7	-	chr3	112418466	112423025	MSTRG.36403.2	-	112418466,112420743	112419009,112423025	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	36330372	36330385	36330372	-	High_confidence	5	5	11	0.537742	3.277613	chr19	36327346	36330482	LTR|ERV1|HERVS71-int	-	chr19	36324936	36330447	MSTRG.25853.8	-	36324936,36330252	36325764,36330447	0.545455
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	33931375	33931418	33931375	+	High_confidence	6	6	23	1.124370	3.533771	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.521739
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	76531174	76531176	76531174	-	RAMPAGE_only	17	28	29	1.417684	3.852498	chr12	76530995	76531214	LTR|ERVL-MaLR|THE1D	-	chr12	76351796	76559535	OSBPL8|ENST00000393249.6	-	76351796,76356625,76358705,76369213,76369636,76371447,76373343,76375272,76378451,76384253,76386167,76386578,76389644,76390419,76392580,76394644,76397693,76399872,76402688,76410563,76450850,76487509,76534233,76537003,76537956,76559396	76356021,76356728,76358811,76369301,76369822,76371584,76373433,76375370,76378550,76384350,76386266,76386660,76389829,76390657,76392752,76394729,76397897,76399974,76402766,76410634,76450988,76487618,76534281,76537041,76537986,76559535	0.896552
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	61588367	61588395	61588367	-	RAMPAGE_only	2	2	9	0.439971	2.725481	chr11	61588272	61588409	SINE|MIR|MIRb	-	chr11	61518626	61580872	SYT7|ENST00000535826.5	-	61518626,61523074,61523826,61524362,61527914,61532988,61546030,61547176,61551383,61556103,61580789	61518731,61523274,61523941,61524532,61528185,61533124,61546255,61547308,61551463,61556207,61580872	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	7877792	7877863	7877798	+	High_confidence	14	14	81	3.959739	5.055310	chr2	7875014	7878438	LTR|ERV1|HERVH-int	-	chr2	7878002	7893848	MSTRG.26957.1	+	7878002,7883431,7891272	7878481,7883559,7893848	0.913580
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	30971686	30971730	30971705	+	High_confidence	13	13	41	2.004312	4.509385	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.951220
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	45523175	45523196	45523195	-	High_confidence	4	6	13	0.635514	2.625815	chr1	45523044	45523218	LTR|ERV1|LTR34	+	chr1	45514506	45523047	PRDX1|ENST00000424390.1	-	45514506,45514872,45515653,45518937,45522777	45514637,45514995,45515807,45519054,45523047	0.923077
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	159428318	159428358	159428357	-	RAMPAGE_only	4	7	25	1.222142	3.923856	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.520000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	65218864	65218921	65218920	+	RAMPAGE_only	26	26	46	2.248741	4.563532	chr1	65218928	65219138	LINE|L1|L1M5	+	chr1	65165931	65226429	AK4|ENST00000479060.1	+	65165931,65190709,65218753,65224751,65226062	65166019,65190829,65218926,65224870,65226429	0.847826
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	34244698	34244816	34244813	-	High_confidence	13	16	113	5.524080	5.765674	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244796	MSTRG.41358.3	-	34175821,34179012,34182679,34218294,34239374,34244615	34175957,34179097,34182867,34218450,34239448,34244796	0.814159
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	54105526	54105544	54105542	-	RAMPAGE_only	6	13	21	1.026599	3.184184	chr8	54105497	54105793	LTR|ERV1|MER41A	+	chr8	54046366	54102017	LYPLA1|ENST00000316963.7	-	54046366,54051011,54052654,54055059,54062253,54063327,54065747,54100907,54101754	54048118,54051188,54052756,54055133,54062324,54063375,54065813,54100939,54102017	0.952381
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	42925437	42925459	42925439	-	High_confidence	2	3	8	0.391085	2.807355	chr21	42925244	42925502	LTR|ERV1|HERVH48-int	-	chr21	42917250	42925598	ERVH48-1|NM_001308491.1	-	42917250,42925345	42919291,42925598	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	80059918	80059933	80059918	+	High_confidence	47	49	159	7.772821	4.244205	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.949686
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	125567108	125567110	125567109	-	High_confidence	350	641	861	42.090558	5.166549	chr4	125567007	125567456	LTR|ERV1|LTR7	-	chr4	125561899	125567127	MSTRG.40023.1	-	125561899,125566859	125562077,125567127	0.800232
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	232845857	232845886	232845885	+	RAMPAGE_only	9	9	31	1.515456	4.349200	chr2	232845876	232846546	LINE|CR1|L3	+	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.935484
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	73009935	73009962	73009935	+	RAMPAGE_only	17	17	27	1.319913	4.163856	chr8	73009880	73010026	SINE|Alu|AluJb	-	chr8	73008907	73067583	MSTRG.51619.5	+	73008907,73013894,73020683,73022215,73024821,73026939,73032041,73039115,73045960,73047515	73009205,73013990,73020805,73022302,73024971,73027052,73032133,73039219,73047495,73067583	0.703704
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	56157286	56157342	56157341	+	High_confidence	7	7	34	1.662113	4.116729	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.529412
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	173746138	173746177	173746148	-	High_confidence	34	34	152	7.430621	6.168869	chr5	173745880	173746596	LTR|ERV1|MER4A	+	chr5	173719245	173746211	LINC01484|ENST00000518902.1	-	173719245,173746019	173719543,173746211	0.572368
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	191359200	191359201	191359200	+	RAMPAGE_only	14	14	17	0.831056	3.852169	chr3	191359182	191359658	LINE|L2|L2c	-	chr3	191361102	191398623	MSTRG.38027.3	+	191361102,191369918,191380158,191380686,191380827,191382745,191389495,191391740	191361159,191375589,191380274,191380731,191380932,191382825,191389602,191398623	0.647059
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	94702191	94702250	94702191	-	High_confidence	4	5	31	1.515456	4.126729	chrX	94701137	94704174	LTR|ERV1|HERVH-int	-	chrX	94574450	94702957	MSTRG.56878.1	-	94574450,94697895,94702006	94637412,94698009,94702957	0.580645
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	50895366	50895370	50895369	+	RAMPAGE_only	3	3	8	0.391085	2.521641	chr14	50893612	50896276	LTR|ERV1|HERVH-int	+	chr14	50893581	50904571	ABHD12B|ENST00000554566.5	+	50893581,50895563,50901828,50903388,50904073,50904338	50893758,50895722,50901911,50903467,50904192,50904571	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147871550	147871598	147871597	+	High_confidence	5	6	14	0.684399	2.985228	chr5	147871298	147874075	LTR|ERV1|HERVH-int	-	chr5	147871497	147882190	SCGB3A2|ENST00000507160.5	+	147871497,147881445,147882026	147871679,147881648,147882190	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	20228068	20228322	20228277	-	RAMPAGE_only	37	75	631	30.846855	6.288905	chr19	20227425	20228481	LINE|L1|L1P2	-	chr19	19724733	20238431	MSTRG.25476.1	-	19724733,20226749,20238287	19724754,20228483,20238431	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	37837919	37837947	37837919	-	High_confidence	6	7	19	0.928828	3.836592	chr19	37837502	37843533	LINE|L1|L1PA2	+	chr19	37829049	37836964	AC016582.1|ENST00000636341.1	-	37829049,37833406,37836892	37831851,37833514,37836964	0.526316
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	71269972	71269997	71269996	+	RAMPAGE_only	29	29	66	3.226454	4.810153	chr10	71269656	71270067	LINE|L2|L2a	-	chr10	71212926	71302864	UNC5B|ENST00000373192.4	+	71212926,71279820,71284719,71285325,71286688,71287597,71288567,71290914,71291431,71292466,71293404,71293699,71295810,71296577,71297908,71299111	71213064,71280045,71284863,71285429,71286869,71287765,71288732,71291109,71291821,71292554,71293573,71293933,71295960,71296742,71298090,71302864	0.621212
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	19227323	19227324	19227323	-	RAMPAGE_only	15	15	21	1.026599	3.880180	chr1	19227062	19227285	SINE|MIR|MIRb	-	chr1	19219568	19229395	EMC1|ENST00000494770.6	-	19219568,19220763,19222623,19223395,19227312,19229354	19219698,19220848,19222834,19223569,19227450,19229395	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	123390743	123390745	123390744	+	High_confidence	8	14	16	0.782171	2.852217	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	10681328	10681329	10681328	+	RAMPAGE_only	6	6	8	0.391085	3.000000	chr19	10681334	10681610	SINE|Alu|AluJb	+	chr19	10654303	10689847	ILF3|ENST00000587928.5	+	10654303,10670515,10670973,10671357,10677162,10678612,10679096,10679815,10680345,10681018,10681218,10682536,10683124,10683365,10683635,10683916,10684415,10687345,10688549,10689178	10654487,10670608,10671203,10671535,10677310,10678704,10679192,10679927,10680443,10681130,10682192,10682704,10683262,10683542,10683789,10683970,10684476,10687708,10688678,10689847	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	60887025	60887084	60887070	+	High_confidence	7	11	51	2.493169	5.005759	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.745098
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	72111440	72111497	72111496	-	High_confidence	7	7	31	1.515456	4.284684	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72108817	72111497	ANAPC15|ENST00000538117.5	-	72108817,72109228,72110087,72110543,72111156,72111411	72108875,72109341,72110225,72110603,72111281,72111497	0.645161
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	10057720	10057724	10057723	+	RAMPAGE_only	13	14	28	1.368799	4.282484	chr8	10057533	10057917	LTR|ERVL-MaLR|MSTA	+	chr8	10054268	10428891	MSRA|NM_012331.4	+	10054268,10207832,10245103,10301533,10319882,10428147	10054658,10207901,10245223,10301638,10319989,10428891	0.535714
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	67619986	67619987	67619986	+	High_confidence	1386	1391	1450	70.884216	5.418843	chr11	67618852	67620425	LTR|ERV1|LTR12C	+	chr11	67619973	67628431	MSTRG.8925.1	+	67619973,67626053	67620536,67628431	0.956552
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	81247735	81247799	81247747	+	RAMPAGE_only	20	21	71	3.470882	4.449112	chr1	81245735	81248844	LTR|ERV1|HERVH-int	+	chr1	81245572	81254912	MSTRG.2127.1	+	81245572,81247702,81250807	81245881,81247990,81254912	0.929577
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	302436	302459	302451	+	RAMPAGE_only	7	12	26	1.271027	3.483074	chrX	302394	302560	SINE|Alu|AluSp	-	chrX	281393	303356	PLCXD1|NM_018390.3	+	281393,284166,288732,290647,291498,293034,299096	281684,284314,288869,290776,291654,293218,303356	0.884615
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	2990742	2990755	2990742	-	RAMPAGE_only	5	5	14	0.684399	2.978095	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	105653817	105653841	105653840	-	RAMPAGE_only	7	8	13	0.635514	3.392747	chr7	105653733	105654149	LINE|L2|L2b	+	chr7	105613473	105678018	ATXN7L1|ENST00000474433.5	-	105613473,105620199,105624074,105638352,105639486,105642837,105649406,105665065,105677945	105614816,105620321,105624267,105638609,105639569,105643121,105649560,105665288,105678018	0.769231
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	78457789	78457793	78457789	+	High_confidence	4	4	9	0.439971	2.500000	chr5	78452185	78458210	LINE|L1|L1PA2	-	chr5	78457792	78476829	SCAMP1|ENST00000506858.2	+	78457792,78459244,78475503	78457951,78459362,78476829	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	188109510	188109537	188109536	-	High_confidence	4	4	10	0.488857	3.169925	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188091372	188109603	MSTRG.40883.3	-	188091372,188097060,188101055,188104836,188105179,188109242	188091941,188099175,188101250,188104932,188105590,188109603	0.900000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	48260607	48260659	48260642	-	High_confidence	3527	3607	6857	335.209011	7.349647	chr14	48260540	48260940	LTR|ERV1|LTR7	-	chr14	48224573	48260637	MSTRG.15605.5	-	48224573,48229021,48258584	48228993,48235618,48260637	0.966749
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	93642326	93642361	93642352	-	RAMPAGE_only	11	11	34	1.662113	4.101881	chr7	93640346	93643259	LTR|ERV1|HERVH-int	+	chr7	93424486	93574730	CALCR|ENST00000359558.6	-	93424486,93434252,93435951,93438059,93438209,93443603,93460820,93462062,93468714,93472374,93477557,93479353,93486930,93495903,93574288,93574691	93426589,93434294,93436170,93438126,93438270,93443757,93460947,93462110,93468806,93472487,93477668,93479507,93487007,93495974,93574506,93574730	0.764706
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	54199996	54200023	54199996	-	High_confidence	59	77	239	11.683674	5.788350	chr1	54199790	54199971	SINE|MIR|MIRb	-	chr1	54172335	54200010	CYB5RL|ENST00000421415.5	-	54172335,54179148,54184160,54187651,54195418,54196368,54199975	54174822,54179352,54184265,54187739,54195715,54196491,54200010	0.924686
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	47179145	47179159	47179158	+	High_confidence	13	13	41	2.004312	4.250414	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	0.951220
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	26366323	26366396	26366395	+	RAMPAGE_only	17	21	89	4.350824	4.378596	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	0.977528
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	54637736	54637791	54637753	+	RAMPAGE_only	6	6	38	1.857655	4.237234	chr3	54636818	54639750	LTR|ERV1|HERVH-int	-	chr3	54197370	54885586	CACNA2D3|ENST00000468658.1	+	54197370,54320441,54386714,54562799,54569794,54569953,54581802,54627786,54642127,54752598,54764217,54816852,54837158,54838567,54846392,54871538,54879017,54879349,54880795,54885280,54885488	54197507,54320558,54386774,54562931,54569855,54570104,54581877,54627876,54642241,54752677,54764351,54816870,54837230,54838648,54846467,54871622,54879089,54879411,54880863,54885326,54885586	0.526316
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	181247598	181247599	181247598	-	High_confidence	4	4	7	0.342200	2.584963	chr5	181247404	181247700	SINE|Alu|AluY	+	chr5	181238119	181247576	RACK1|ENST00000510199.5	-	181238119,181239066,181239486,181241491,181242173,181247123	181238239,181239177,181239582,181241639,181242345,181247576	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	40954513	40954548	40954516	+	High_confidence	20	20	97	4.741910	5.089371	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954518	40990524	MSTRG.15550.2	+	40954518,40962789,40974339,40976336	40954952,40962842,40976276,40990524	0.793814
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	54636108	54636123	54636108	-	RAMPAGE_only	7	7	14	0.684399	3.182006	chr3	54635524	54636179	LTR|ERV1|HERVH-int	-	chr3	54632121	54639857	MSTRG.35417.4	-	54632121,54633558,54634460	54632861,54633740,54639857	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	170226573	170226588	170226587	+	High_confidence	9	12	23	1.124370	4.277613	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.739130
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	131794069	131794070	131794069	-	RAMPAGE_only	7	10	11	0.537742	3.027169	chrX	131793836	131794144	SINE|Alu|AluSz	+	chrX	131691529	131795809	FIRRE|ENST00000637577.2	-	131691529,131709497,131711650,131743095,131749305,131755597,131756642,131768548,131783886,131785156,131793993,131794296,131795808	131692636,131709556,131711744,131743248,131749458,131755746,131756709,131768696,131784039,131785258,131794115,131794466,131795809	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	27220088	27220129	27220088	-	High_confidence	5	7	33	1.613227	3.965018	chr11	27219703	27225730	LINE|L1|L1PA2	+	chr11	27063019	27220086	BBOX1-AS1|ENST00000530430.1	-	27063019,27066491,27151049,27217316,27219686	27063060,27066662,27151152,27217480,27220086	0.575758
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	8790139	8790141	8790139	+	RAMPAGE_only	19	35	44	2.150969	3.966476	chr12	8788668	8793938	LTR|ERV1|HERV9NC-int	+	chr12	8788273	8795789	AC092490.1|ENST00000514568.2	+	8788273,8794304	8788760,8795789	0.590909
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	12635948	12635951	12635948	+	RAMPAGE_only	12	15	22	1.075485	3.784942	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	0.954545
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	93591351	93591394	93591393	+	High_confidence	22	23	154	7.528393	4.637995	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591264	93811677	MSTRG.49167.1	+	93591264,93807203	93591771,93811677	0.948052
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147872028	147872029	147872028	+	High_confidence	104	116	137	6.697336	5.194134	chr5	147871298	147874075	LTR|ERV1|HERVH-int	-	chr5	147872017	147882191	SCGB3A2|ENST00000514688.1	+	147872017,147881445,147882026	147872321,147881648,147882191	0.970803
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	97779842	97779914	97779842	+	High_confidence	39	44	81	3.959739	5.509212	chr6	97779487	97779947	LTR|ERV1|LTR7	+	chr6	97779727	97800994	MSTRG.46110.1	+	97779727,97787395,97790860	97782147,97787500,97800994	0.802469
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	28059629	28059688	28059629	-	High_confidence	26	41	189	9.239391	5.907311	chr3	28059242	28065270	LINE|L1|L1PA3	+	chr3	27997543	28059691	MSTRG.34727.5	-	27997543,28059241	27997868,28059691	0.529101
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	76234500	76234534	76234518	-	High_confidence	14	14	53	2.590940	4.717374	chr4	76234334	76234657	LTR|ERV1|MER61A	-	chr4	76158759	76234536	SCARB2|ENST00000638295.1	-	76158759,76163224,76166249,76168402,76169866,76174143,76175790,76176436,76179516,76180953,76195706,76234302	76161751,76163383,76166301,76168476,76169985,76174313,76175910,76176528,76179705,76181101,76195864,76234536	0.660377
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	97310597	97310613	97310611	+	High_confidence	945	1723	3886	189.969698	7.191648	chrX	97310220	97310731	LINE|L2|L2a	-	chrX	97310495	97604996	MSTRG.56902.7	+	97310495,97348080,97383908,97429649,97599252	97310658,97348280,97384044,97429745,97604996	0.912764
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	19344364	19344429	19344364	-	RAMPAGE_only	13	15	65	3.177568	4.267687	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.984615
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	87040212	87040223	87040222	-	High_confidence	53	54	162	7.919478	5.998923	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86880015	87040240	MSTRG.49082.3	-	86880015,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040240	0.956790
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	75879161	75879168	75879161	+	High_confidence	11	12	23	1.124370	3.784942	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75878185	75897062	UBE2Q2|ENST00000563966.1	+	75878185,75879097,75883365,75890434,75890918,75896994	75878360,75879188,75883424,75890483,75891014,75897062	0.521739
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	122482061	122482086	122482061	+	High_confidence	812	855	2131	104.175354	7.468626	chr6	122481961	122482259	SINE|Alu|AluYe5	-	chr6	122482044	122726567	MSTRG.46618.8	+	122482044,122585920,122603503,122633282,122675077,122717786,122725127	122482266,122586007,122603623,122633367,122675144,122717963,122726567	0.892069
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	103809277	103809278	103809277	+	RAMPAGE_only	11	11	11	0.537742	2.845351	chr8	103809108	103809299	LINE|L2|L2b	+	chr8	103819187	104254428	RIMS2|NM_014677.4	+	103819187,103885297,103910133,103912052,103915494,103916413,103918440,103921671,103931262,103936550,103942772,103961064,103975349,103989304,103998184,104013441,104014505,104244915,104248700,104249486,104251023,104251601	103819629,103886223,103910201,103912172,103915594,103916537,103918487,103921784,103931393,103936722,103942926,103961133,103975506,103989421,103998250,104013621,104014615,104245057,104248813,104249588,104251163,104254428	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	127451107	127451128	127451107	-	High_confidence	7	7	18	0.879942	2.816308	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	92269128	92269311	92269310	-	RAMPAGE_only	12	12	107	5.230766	5.569895	chr4	92269265	92269420	DNA|hAT-Charlie|MER5A1	+	chr4	92268766	92277075	LNCPRESS2|ENST00000502518.1	-	92268766,92277049	92269356,92277075	0.757009
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	193502760	193502788	193502777	+	High_confidence	49	49	178	8.701649	6.034507	chr2	193501468	193502973	LTR|ERV1|LTR12C	-	chr2	193502801	193513402	MSTRG.30245.1	+	193502801,193509551	193509527,193513402	0.617978
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	3397202	3397205	3397204	+	RAMPAGE_only	5	7	9	0.439971	2.750000	chr11	3397121	3398090	Retroposon|SVA|SVA_E	+	chr11	3401758	3408810	TSSC2|ENST00000450217.2	+	3401758,3402612,3403592,3404853,3406498,3407621,3408685	3401867,3402729,3403652,3404963,3406610,3407697,3408810	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	57211700	57211701	57211700	-	RAMPAGE_only	9	10	10	0.488857	2.947703	chr14	57211632	57211874	SINE|Alu|AluSx1	+	chr14	57206793	57232372	EXOC5|ENST00000554011.5	-	57206793,57209566,57209952,57217981,57219321,57222307,57229733,57231505	57208797,57209782,57210061,57218068,57219442,57222416,57229881,57232372	0.900000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	55101938	55101939	55101938	-	RAMPAGE_only	25	25	34	1.662113	4.160705	chr4	55101500	55101889	LINE|L1|L1PA10	-	chr4	55078530	55122921	KDR|ENST00000647068.1	-	55078530,55081955,55082535,55087606,55088867,55089373,55089690,55089955,55092616,55094801,55095576,55096228,55097661,55098136,55098696,55101896,55102361,55104642,55105831,55106686,55107736,55110402,55110653,55113303,55114125,55114873,55115280,55118603,55121096,55122841	55080163,55082041,55082635,55087758,55088973,55089473,55089802,55090078,55092714,55094955,55095665,55096342,55097766,55098272,55098803,55102028,55102508,55104984,55105940,55106810,55107893,55110566,55110768,55113481,55114265,55115042,55115411,55118800,55121190,55122921	0.941176
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147871183	147871320	147871207	+	High_confidence	20	20	169	8.261678	5.908558	chr5	147871171	147871319	LTR|ERV1|HERVH-int	-	chr5	147871497	147882190	SCGB3A2|ENST00000507160.5	+	147871497,147881445,147882026	147871679,147881648,147882190	0.603550
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	176324883	176324898	176324897	-	RAMPAGE_only	4	4	11	0.537742	2.521928	chr3	176323953	176326910	LTR|ERV1|HERVH-int	-	chr3	176284301	176327180	MSTRG.37639.1	-	176284301,176318427,176324812,176327074	176288029,176322018,176325000,176327180	0.545455
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	111530155	111530161	111530160	+	RAMPAGE_only	7	7	20	0.977713	2.965584	chr9	111529832	111530739	LTR|ERVL|MER21C	+	chr9	111525232	111544432	ZNF483|ENST00000309235.5	+	111525232,111527267,111530874,111533738,111534260,111541656	111525262,111527807,111530963,111533865,111534353,111544432	0.550000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	92269339	92269346	92269345	-	RAMPAGE_only	6	6	11	0.537742	2.845351	chr4	92269265	92269420	DNA|hAT-Charlie|MER5A1	+	chr4	92252848	92277293	MSTRG.39490.6	-	92252848,92260838,92277049	92260655,92270464,92277293	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	98200508	98200554	98200527	+	High_confidence	36	46	179	8.750534	4.946811	chr13	98200509	98200604	SINE|MIR|MIRc	-	chr13	98200440	98389693	MSTRG.14692.8	+	98200440,98213219,98343761,98365394,98368116,98377820,98384729,98385666,98388382,98389483	98200775,98213413,98343866,98365437,98368195,98377918,98384844,98385814,98388478,98389693	0.972067
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	121582273	121582286	121582285	-	High_confidence	6	6	28	1.368799	4.088221	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121429508	121582552	MSTRG.13193.4	-	121429508,121439856,121441069,121442156,121444011,121444449,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549459,121574546,121575780,121578801,121581023,121582235	121430469,121440977,121441233,121443793,121444272,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548983,121549638,121574593,121575859,121578946,121581134,121582552	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	39902313	39902368	39902347	+	High_confidence	317	330	692	33.828881	7.441985	chr8	39902359	39903639	LTR|ERV1|LTR49-int	+	chr8	39902370	39922654	IDO1|ENST00000519154.5	+	39902370,39913402,39917874,39918087,39918814,39920099,39922551	39902448,39914009,39917970,39918207,39918933,39920114,39922654	0.690751
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	109458934	109458956	109458934	-	High_confidence	9	9	22	1.075485	3.082328	chr12	109458651	109459343	LINE|L1|HAL1	+	chr12	109451633	109458982	KCTD10|ENST00000535546.5	-	109451633,109456117,109457629,109457991,109458924	109451813,109456313,109457682,109458078,109458982	0.545455
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	95172685	95172687	95172686	-	RAMPAGE_only	5	7	9	0.439971	2.503258	chr12	95172658	95172733	LINE|CR1|L3	-	chr12	95092827	95217379	FGD6|ENST00000549499.1	-	95092827,95094591,95105006,95106953,95107562,95108347,95108502,95113650,95134738,95137521,95141387,95152810,95152925,95172599,95208842,95217224	95092845,95094694,95105086,95107037,95107631,95108419,95108561,95113701,95134826,95137678,95141539,95152841,95152993,95172744,95211267,95217379	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	108223580	108223581	108223580	+	High_confidence	4	4	7	0.342200	2.521641	chr11	108223533	108223589	SINE|MIR|MIR	+	chr11	108223102	108236534	ATM|ENST00000530958.5	+	108223102,108227775,108229177,108235669	108227696,108227888,108229323,108236534	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	188287683	188287695	188287694	-	High_confidence	3	3	8	0.391085	2.807355	chr2	188287483	188287806	SINE|Alu|AluY	+	chr2	188227819	188287634	LINC01090|ENST00000415357.1	-	188227819,188287466	188228532,188287634	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	17860948	17861007	17861006	+	High_confidence	32	40	188	9.190505	5.355300	chr3	17858274	17861391	LINE|L1|L1HS	-	chr3	17860940	17867005	MSTRG.34638.2	+	17860940,17863405	17861402,17867005	0.638298
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	151049539	151049540	151049539	-	High_confidence	116	116	124	6.061823	5.439281	chr4	151049009	151049743	LTR|ERV1|LTR1	-	chr4	150264660	151049407	MSTRG.40355.5	-	150264660,150277852,150282449,150285932,150302624,150310228,150315560,150321190,150325808,150349991,150415437,150435588,150436723,150467672,150471623,150487731,150490917,150588047,150590712,150599006,150683550,150735257,150761782,150798080,150806270,150808319,150817123,150828179,150831816,150844099,150844657,150848817,150849421,150850723,150851884,150867670,150868181,150870524,150871344,150872662,150893051,150896393,150897738,150900048,150905837,150906296,150908333,150908659,150914194,150915607,150916400,150916616,150921197,150928515,150928833,151014426,151049349	150265812,150278004,150282646,150286034,150302792,150310384,150315623,150321368,150325898,150350159,150415590,150435708,150436864,150467785,150471739,150487834,150491035,150588184,150590859,150599131,150683717,150735366,150761847,150798142,150806404,150808398,150817257,150828621,150831976,150844207,150844779,150848998,150849575,150850902,150852943,150867863,150868305,150870606,150871453,150872755,150893149,150896456,150897818,150900217,150905990,150906405,150908467,150908857,150914341,150915727,150916527,150916738,150921293,150928616,150929065,151014861,151049407	0.830645
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	7263925	7263927	7263925	+	RAMPAGE_only	6	8	10	0.488857	2.947703	chr5	7263579	7264028	LTR|ERV1|LTR7	+	chr5	7262819	7264364	MSTRG.41016.1	+	7262819	7264364	0.600000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	239629121	239629151	239629150	+	High_confidence	10	10	27	1.319913	4.315824	chr1	239623498	239629523	LINE|L1|L1HS	-	chr1	239629072	239915452	CHRM3|ENST00000255380.8	+	239629072,239632223,239678185,239827251,239907432	239629539,239632286,239678288,239827378,239915452	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	75127298	75127299	75127298	-	High_confidence	5	5	7	0.342200	2.521641	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75127221	MSTRG.39219.1	-	75081701,75084588,75127065	75082357,75084703,75127221	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	55656457	55656464	55656457	-	High_confidence	27	28	44	2.150969	4.168018	chr13	55655992	55656654	LTR|ERV1|HERVH-int	-	chr13	55532343	55656668	MSTRG.14306.2	-	55532343,55572623,55577089,55655954	55536346,55576966,55579247,55656668	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	91197423	91197469	91197423	+	RAMPAGE_only	8	8	21	1.026599	3.939471	chr8	91191844	91197868	LINE|L1|L1PA3	-	chr8	91209493	91395649	SLC26A7|ENST00000522181.5	+	91209493,91218889,91249618,91289135,91295530,91318215,91334294,91340403,91343352,91351809,91352900,91362352,91363471,91366579,91369784,91389337,91393796,91393935,91395061	91209542,91219005,91249844,91289246,91295703,91318380,91334447,91340551,91343466,91351887,91352996,91362459,91363538,91366717,91369833,91389438,91393851,91394039,91395649	0.523810
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	20658321	20658347	20658346	+	High_confidence	34	39	136	6.648451	5.202366	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.735294
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	99040961	99040972	99040971	-	High_confidence	3	3	7	0.342200	2.521641	chr2	99040919	99041367	LTR|ERV1|LTR10E	+	chr2	99039684	99040926	MSTRG.28629.1	-	99039684	99040926	0.714286
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	103742599	103742607	103742603	+	High_confidence	89	113	251	12.270302	5.632704	chrX	103742249	103742619	LTR|ERV1|LTR49	+	chrX	103742591	103786575	MSTRG.57038.5	+	103742591,103746874,103774216,103776852,103785581,103786464	103743107,103746922,103774362,103776999,103785768,103786575	0.924303
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	67620111	67620128	67620126	+	High_confidence	3	6	14	0.684399	2.950212	chr11	67618852	67620425	LTR|ERV1|LTR12C	+	chr11	67619973	67628431	MSTRG.8925.1	+	67619973,67626053	67620536,67628431	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	44209304	44209319	44209310	+	RAMPAGE_only	3	3	9	0.439971	2.947703	chr2	44209358	44209398	SINE|Alu|Alu	+	chr2	44168909	44231472	PPM1B|ENST00000345249.8	+	44168909,44209209,44217966,44218479,44230412	44169274,44209327,44218078,44218537,44231472	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	16697695	16697716	16697695	-	High_confidence	3	3	8	0.391085	2.807355	chr3	16697224	16697676	LTR|ERV1|LTR49-int	-	chr3	16592027	16697860	MSTRG.34468.3	-	16592027,16593654,16594532,16595313,16596749,16596987,16597489,16598086,16598451,16637884,16647573,16697378	16592148,16593768,16594583,16595385,16596889,16597051,16597541,16598178,16598598,16638085,16648612,16697860	0.625000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	58578102	58578145	58578144	-	High_confidence	4	4	12	0.586628	2.855389	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.916667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	45062831	45062875	45062865	-	RAMPAGE_only	4	4	24	1.173256	3.918296	chr6	45062447	45068476	LINE|L1|L1PA2	+	chr6	44828731	45377933	SUPT3H|ENST00000371460.5	-	44828731,44932652,44953309,44954494,44961752,45003652,45014800,45020545,45105921,45321795,45322878,45365200,45377767	44829857,44932763,44953417,44954607,44961828,45003792,45014891,45020632,45106006,45321891,45322967,45365301,45377933	0.625000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	12662744	12662745	12662744	+	High_confidence	407	408	413	20.189780	6.223992	chr5	12661734	12663059	LTR|ERV1|LTR12C	+	chr5	12662752	12723573	MSTRG.41074.4	+	12662752,12711197	12663087,12723573	0.675545
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	97295874	97295933	97295901	+	High_confidence	13	13	119	5.817394	5.566841	chr15	97289925	97296313	LINE|L1|L1PA3	-	chr15	97295880	97415824	LINC02253|ENST00000560314.1	+	97295880,97411191,97415789	97296323,97411278,97415824	0.663866
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	130428509	130428553	130428519	-	High_confidence	16	17	135	6.599565	5.919201	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046259.1	-	130416749,130419070,130425090,130425913,130427703	130418298,130419245,130425158,130426038,130428546	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	117623628	117623721	117623638	-	High_confidence	13	16	113	5.524080	4.444240	chr2	117623253	117629278	LINE|L1|L1PA3	+	chr2	117499691	117623431	MSTRG.28938.1	-	117499691,117623234	117501554,117623431	0.761062
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	42872738	42872812	42872811	-	High_confidence	2176	2236	3605	176.232826	7.237150	chr13	42872705	42873158	LTR|ERV1|LTR7	-	chr13	42836602	42872802	MSTRG.13907.2	-	42836602,42842798,42870600	42842551,42868464,42872802	0.980028
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	61773777	61773778	61773777	+	RAMPAGE_only	48	48	57	2.786483	4.606284	chr4	61773644	61773960	LTR|ERV1|MER34A1	-	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.789474
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	182738443	182738446	182738443	+	RAMPAGE_only	8	9	15	0.733285	2.923231	chr4	182738424	182738481	SINE|tRNA|LFSINE_Vert	+	chr4	182680323	182755353	TENM3|ENST00000502950.1	+	182680323,182680542,182681813,182688165,182714086,182728964,182730199,182730877,182736807,182738400,182743169,182744142,182751799,182753449,182754384	182680349,182680737,182682014,182688351,182714233,182729181,182730319,182731139,182737075,182738544,182743419,182744163,182752032,182753604,182755353	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	114394412	114394413	114394412	-	High_confidence	12	14	15	0.733285	3.182006	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	0.933333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	28617958	28617980	28617958	-	RAMPAGE_only	4	4	9	0.439971	3.000000	chr1	28617880	28617910	SINE|MIR|MIR	-	chr1	28603100	28643005	TAF12|ENST00000263974.4	-	28603100,28605371,28613246,28617952,28621913,28642654	28603574,28605460,28613361,28618030,28622165,28643005	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	50775579	50775580	50775579	+	RAMPAGE_only	14	15	16	0.782171	2.840224	chr12	50775374	50775612	SINE|Alu|AluJo	-	chr12	50764508	50814368	ATF1|ENST00000552487.1	+	50764508,50780139,50795908,50809455,50814009,50814279	50764647,50780238,50796009,50809589,50814192,50814368	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	215546191	215546208	215546207	+	High_confidence	7	7	16	0.782171	3.875000	chr2	215546181	215546367	DNA|hAT-Charlie|MER5A	-	chr2	215546197	215713895	AC012668.3|ENST00000417485.6	+	215546197,215621857,215665379,215666982,215677943,215681497,215681923,215713239	215546413,215621925,215665445,215667060,215678206,215681589,215682126,215713895	0.687500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	97188554	97188564	97188563	-	RAMPAGE_only	4	5	11	0.537742	3.121928	chr9	97188329	97188625	SINE|Alu|AluSc	+	chr9	97156569	97221235	ANKRD18CP|ENST00000354752.5	-	97156569,97160181,97161754,97162564,97170606,97172947,97178263,97179996,97185441,97187453,97191730,97194702,97200458,97204860,97211372,97221029	97156585,97160402,97161966,97162846,97170736,97173060,97178413,97180916,97185515,97187507,97191798,97194840,97200565,97205034,97211487,97221235	0.727273
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	122074671	122074795	122074699	-	RAMPAGE_only	93	115	472	23.074034	5.692114	chr7	122074094	122074821	LINE|L1|L1MB8	-	chr7	122073543	122144290	AASS|NM_005763.3	-	122073543,122077837,122078861,122079596,122081499,122086011,122091702,122092842,122093047,122098449,122098744,122101370,122101620,122113117,122113597,122115073,122116632,122116878,122118306,122118562,122126374,122129360,122133516,122144160	122076607,122078014,122078950,122079712,122081595,122086179,122091843,122092951,122093158,122098576,122098866,122101438,122101680,122113229,122113720,122115222,122116760,122116957,122118453,122118630,122126459,122129537,122133741,122144290	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	186226374	186226400	186226398	+	High_confidence	3	5	13	0.635514	3.251629	chr4	186225733	186226569	LINE|L1|L1M4	-	chr4	186226437	186236896	KLKB1|ENST00000428196.5	+	186226437,186227439,186228194,186232126,186233951,186236780	186226489,186227587,186228253,186232289,186234058,186236896	0.846154
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	39407629	39407704	39407682	+	High_confidence	184	210	662	32.362311	6.647785	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.963746
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	18693879	18693911	18693910	+	RAMPAGE_only	12	12	38	1.857655	4.520000	chr3	18692573	18694307	LINE|L1|L1PA3	-	chr3	18465982	18764059	SATB1-AS1|ENST00000595388.5	+	18465982,18526386,18527173,18745953,18763752	18466039,18526540,18527326,18746070,18764059	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	132085618	132085657	132085655	-	High_confidence	128	140	202	9.874905	5.955411	chr8	132085551	132086002	LTR|ERV1|LTR7	-	chr8	132061237	132085676	MSTRG.52706.3	-	132061237,132065885,132071339,132076054,132076474,132077725,132079717,132085404	132064038,132065968,132071493,132076129,132076543,132077971,132079966,132085676	0.613861
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	118651542	118651626	118651592	-	High_confidence	30	30	182	8.897191	6.104053	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.972527
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	133089588	133089693	133089692	+	RAMPAGE_only	55	56	370	18.087696	6.361845	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.983784
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	39420782	39420800	39420782	-	High_confidence	2	4	10	0.488857	2.725481	chr15	39420570	39426588	LINE|L1|L1PA2	+	chr15	39419029	39420709	AC013652.1|ENST00000558277.1	-	39419029,39420543	39419652,39420709	0.700000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	7290434	7290445	7290444	+	High_confidence	5	5	10	0.488857	2.947703	chr5	7290187	7290485	SINE|Alu|AluYm1	+	chr5	7290822	7296345	AC091951.3|ENST00000500762.2	+	7290822,7296214	7290894,7296345	0.700000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	223027624	223027657	223027625	-	RAMPAGE_only	6	9	18	0.879942	2.821888	chr1	223026735	223029699	LTR|ERV1|HERVH-int	-	chr1	223009690	223030115	MSTRG.4427.1	-	223009690	223030115	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	6208681	6208682	6208681	-	High_confidence	1062	1064	1064	52.014349	4.184941	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.959586
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	54850816	54850964	54850911	-	RAMPAGE_only	47	58	290	14.176843	5.776682	chr1	54850787	54850913	SINE|MIR|MIR3	-	chr1	54849663	54886890	DHCR24|ENST00000648712.1	-	54849663,54853433,54854036,54865302,54871349,54875092,54875941,54879059,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54879319,54883773,54886890	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	52021054	52021087	52021062	+	RAMPAGE_only	9	10	26	1.271027	3.921030	chr10	52020367	52021072	LTR|ERV1|MER50B	-	chr10	52036807	52298350	MSTRG.5939.10	+	52036807,52054483,52062536,52133839,52161888,52251569,52271349,52272391,52280788,52282152,52288725,52288930,52290223,52293801	52037112,52054561,52062631,52133905,52161963,52251666,52271489,52272481,52280930,52282316,52288848,52288993,52290290,52298350	0.961538
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	34692395	34692435	34692419	+	High_confidence	16	16	85	4.155282	5.341891	chr11	34691292	34692830	LINE|L1|L1PA2	-	chr11	34692373	34702209	MSTRG.8277.1	+	34692373,34701825	34692889,34702209	0.576471
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	52236227	52236239	52236227	-	High_confidence	5	6	12	0.586628	3.251629	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	29142762	29142763	29142762	+	High_confidence	108	121	133	6.501794	5.366294	chr10	29142530	29143374	LTR|ERV1|LTR1A2	+	chr10	29142647	29144035	MSTRG.5596.1	+	29142647,29143607	29143087,29144035	0.601504
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	54637683	54637684	54637683	+	RAMPAGE_only	4	5	7	0.342200	2.521641	chr3	54636818	54639750	LTR|ERV1|HERVH-int	-	chr3	54197370	54885586	CACNA2D3|ENST00000468658.1	+	54197370,54320441,54386714,54562799,54569794,54569953,54581802,54627786,54642127,54752598,54764217,54816852,54837158,54838567,54846392,54871538,54879017,54879349,54880795,54885280,54885488	54197507,54320558,54386774,54562931,54569855,54570104,54581877,54627876,54642241,54752677,54764351,54816870,54837230,54838648,54846467,54871622,54879089,54879411,54880863,54885326,54885586	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	191927294	191927375	191927345	-	High_confidence	21	21	77	3.764196	5.085160	chr3	191927318	191927716	LTR|ERV1|LTR7	+	chr3	191914764	191927479	MSTRG.38078.1	-	191914764,191917360,191926976	191915540,191917486,191927479	0.818182
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	111544152	111544157	111544156	+	High_confidence	95	114	306	14.959014	6.511103	chrX	111543806	111544258	LTR|ERV1|LTR7	+	chrX	111544148	111554065	MSTRG.57121.1	+	111544148,111553447	111544406,111554065	0.660131
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	167228239	167228307	167228306	+	High_confidence	601	632	2413	117.961112	7.496606	chr6	167227674	167231799	LTR|ERV1|HUERS-P1-int	+	chr6	167228306	167253036	MSTRG.47364.2	+	167228306,167231859,167232478,167237240	167228397,167231957,167232560,167253036	0.798177
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	53541094	53541099	53541094	-	High_confidence	4	4	11	0.537742	2.845351	chr15	53540633	53546677	LINE|L1|L1PA2	+	chr15	53513740	53541103	WDR72|ENST00000567224.1	-	53513740,53523217,53540889	53517754,53523322,53541103	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	32403116	32403149	32403148	-	RAMPAGE_only	95	104	183	8.946077	5.282765	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	9422970	9422971	9422970	-	High_confidence	5	5	8	0.391085	2.750000	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9412268	9423087	ITGB1BP1|ENST00000467606.5	-	9412268,9414177,9418625,9422965	9412405,9414256,9418732,9423087	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	125917862	125917866	125917862	+	High_confidence	34	35	59	2.884254	4.799635	chr7	125917556	125917965	LTR|ERV1|LTR7	+	chr7	125917870	125933832	AC003975.1|ENST00000411856.1	+	125917870,125920056,125923693,125924211,125933773	125918118,125920153,125923950,125924387,125933832	0.762712
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	7158930	7158931	7158930	-	RAMPAGE_only	199	201	211	10.314876	5.184179	chr8	7158775	7159835	LTR|ERVK|MER11C	-	chr8	7148969	7202532	MSTRG.50662.1	-	7148969,7202405	7159846,7202532	0.962085
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	169812903	169812904	169812903	-	High_confidence	60	60	72	3.519768	4.129981	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.930556
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	52893828	52893842	52893828	-	RAMPAGE_only	3	3	8	0.391085	2.500000	chr19	52893768	52893881	SINE|Alu|AluSx	+	chr19	52876171	52891346	ZNF320|NM_207333.2	-	52876171,52888126,52890240,52891228	52881983,52888253,52890328,52891346	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	68267936	68267937	68267936	+	RAMPAGE_only	15	15	15	0.733285	3.056565	chr16	68267617	68268452	LTR|ERVL|MER21B	+	chr16	68266601	68275001	SLC7A6|ENST00000563146.1	+	68266601,68273821,68274690	68266721,68273904,68275001	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	27821492	27821607	27821538	+	High_confidence	36	41	168	8.212792	5.638831	chr3	27815983	27821983	LINE|L1|L1PA7	-	chr3	27821597	27860192	LINC01980|ENST00000455984.1	+	27821597,27824649,27860086	27821724,27824748,27860192	0.607143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	239629329	239629347	239629346	+	High_confidence	5	5	12	0.586628	3.418296	chr1	239623498	239629523	LINE|L1|L1HS	-	chr1	239629072	239915452	CHRM3|ENST00000255380.8	+	239629072,239632223,239678185,239827251,239907432	239629539,239632286,239678288,239827378,239915452	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	211399365	211399372	211399365	+	High_confidence	13	14	27	1.319913	3.488525	chr1	211399312	211400193	LTR|ERVK|HERVK11-int	+	chr1	211399257	211432534	LINC00467|ENST00000610948.1	+	211399257,211426210,211432318	211399437,211426283,211432534	0.703704
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	3176917	3176937	3176930	-	High_confidence	3	3	10	0.488857	2.641604	chr17	3176530	3182557	LINE|L1|L1PA2	+	chr17	3134968	3176935	AC090282.1|ENST00000572821.5	-	3134968,3160233,3163692,3176875	3135190,3160288,3163889,3176935	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	88994100	88994108	88994102	+	RAMPAGE_only	19	26	65	3.177568	4.492738	chr15	88993950	88994288	LTR|ERV1|LTR12B	+	chr15	88997150	88997759	MSTRG.18595.1	+	88997150	88997759	0.630769
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	30354663	30354710	30354663	-	High_confidence	7	7	27	1.319913	4.208410	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	131578853	131578876	131578875	-	High_confidence	6	6	12	0.586628	2.522055	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.583333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	55280196	55280218	55280199	-	High_confidence	22	24	70	3.421997	3.817432	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	199956009	199956013	199956012	+	High_confidence	5	5	10	0.488857	3.321928	chr2	199955996	199956125	LINE|L1|L1MDb	+	chr2	199955820	200008540	MAIP1|ENST00000435773.2	+	199955820,199959267,199959753,200005742,200008465	199956248,199959339,199959880,200005777,200008540	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	18674256	18674258	18674257	-	High_confidence	772	1056	1345	65.751221	7.407030	chr5	18674152	18674598	LTR|ERV1|LTR7	-	chr5	18649608	18674250	MSTRG.41183.7	-	18649608,18664323,18672041,18674004	18658539,18664434,18672329,18674250	0.864684
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	167303414	167303432	167303414	-	High_confidence	6	6	15	0.733285	2.923231	chr5	167303270	167303678	LTR|ERV1|LTR7	-	chr5	167296233	167303372	AC091820.1|ENST00000523497.1	-	167296233,167297462,167303122	167296543,167297550,167303372	0.866667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	101692701	101692718	101692717	+	RAMPAGE_only	50	50	129	6.306251	4.661455	chr3	101691892	101692861	LTR|ERVK|LTR5_Hs	+	chr3	101691688	101701076	MSTRG.36115.1	+	101691688,101692892	101692222,101701076	0.937984
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	976418	976507	976438	+	High_confidence	26	28	102	4.986338	5.749494	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976589	1174804	AP005328.1|ENST00000580781.5	+	976589,1133842,1159178,1162814,1174645	976895,1133894,1159398,1162853,1174804	0.509804
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	1880087	1880103	1880087	-	High_confidence	13	16	21	1.026599	3.134871	chr19	1880079	1880146	DNA|hAT-Ac|OldhAT1	+	chr19	1877203	1880017	ABHD17A|ENST00000592757.1	-	1877203,1877507,1878663,1879920	1877425,1877687,1878904,1880017	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	240022183	240022226	240022215	-	RAMPAGE_only	20	21	54	2.639826	3.061271	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.981481
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	87410955	87410963	87410962	+	High_confidence	9	10	18	0.879942	3.572431	chr9	87410693	87411146	LTR|ERV1|LTR7	+	chr9	87411057	87424567	MSTRG.54249.3	+	87411057,87413369,87417303	87411294,87413471,87424567	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	112509440	112509454	112509453	+	RAMPAGE_only	4	4	8	0.391085	2.807355	chr2	112503812	112509845	LINE|L1|L1HS	-	chr2	112522150	112532411	TTL|ENST00000460450.1	+	112522150,112528680	112522567,112532411	0.625000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	131919007	131919105	131919080	+	RAMPAGE_only	69	105	250	12.221416	6.026882	chr6	131918252	131919316	LINE|L1|L1PA13	+	chr6	131901963	131921303	MSTRG.46783.2	+	131901963,131903946,131918449	131902151,131904234,131921303	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	46868643	46868644	46868643	+	High_confidence	70	70	72	3.519768	4.906888	chr18	46868192	46868774	LTR|ERV1|LTR10B1	+	chr18	46868662	46875113	MSTRG.24126.1	+	46868662,46868811,46874769	46868692,46868990,46875113	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	112420924	112420935	112420924	-	RAMPAGE_only	3	3	8	0.391085	2.750000	chr3	112419874	112422911	LTR|ERV1|HERVH-int	-	chr3	112418432	112423009	MSTRG.36403.1	-	112418432	112423009	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	93349879	93349899	93349881	+	High_confidence	3	5	14	0.684399	3.392747	chr9	93348040	93351024	LTR|ERV1|HERVH-int	+	chr9	93349257	93365328	MSTRG.54465.3	+	93349257,93352752	93350154,93365328	0.642857
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	27445105	27445107	27445105	-	RAMPAGE_only	22	35	42	2.053198	4.804508	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.880952
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	150391575	150391655	150391654	+	RAMPAGE_only	13	14	43	2.102084	4.106384	chr5	150391651	150391897	SINE|MIR|MIRb	+	chr5	150374733	150394916	TCOF1|ENST00000514442.5	+	150374733,150374953,150375338,150375720,150376081,150376422,150378904,150379228,150379531,150387901,150389886,150391543,150391956	150374811,150375163,150375554,150375909,150376330,150376620,150379042,150379408,150379732,150388088,150390023,150391795,150394916	0.976744
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	41871736	41871791	41871790	-	RAMPAGE_only	20	22	126	6.159594	5.488209	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.880952
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	57532056	57532060	57532056	-	RAMPAGE_only	4	4	8	0.391085	2.521641	chr12	57531960	57532134	LINE|RTE-BovB|MamRTE1	+	chr12	57530310	57547141	DCTN2|ENST00000434715.7	-	57530310,57532014,57532212,57532571,57532732,57532983,57533237,57533952,57534291,57535055,57535483,57535748,57538518,57541363,57546027,57547027	57530775,57532106,57532315,57532643,57532810,57533022,57533303,57534097,57534452,57535154,57535545,57535845,57538524,57541372,57546096,57547141	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	43604244	43604245	43604244	+	RAMPAGE_only	7	7	10	0.488857	2.846439	chr20	43604286	43604596	SINE|Alu|AluSx1	+	chr20	43613849	43624122	IFT52|ENST00000467024.5	+	43613849,43618939,43620856,43623890	43613976,43619026,43620925,43624122	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	9448772	9448773	9448772	-	High_confidence	6	6	9	0.439971	2.500000	chr12	9448691	9448811	SINE|MIR|MIR3	+	chr12	9418672	9448229	DDX12P|ENST00000432996.2	-	9418672,9419111,9419488,9419980,9420188,9420514,9421387,9421817,9422564,9424527,9425470,9425715,9426081,9427632,9427820,9429131,9429559,9430587,9432365,9432968,9433307,9434025,9436939,9437402,9438010,9443534,9448103	9418893,9419190,9419573,9420081,9420255,9420664,9421491,9421890,9422621,9424640,9425602,9425824,9426120,9427700,9427865,9429211,9429606,9430740,9432574,9433056,9433415,9434139,9437104,9437489,9438259,9443612,9448229	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	54132865	54132866	54132865	-	High_confidence	356	362	451	22.047435	6.279703	chr13	54132760	54133158	LTR|ERV1|LTR7	-	chr13	54126861	54132866	LINC00458|ENST00000451744.1	-	54126861,54130873,54132612	54127429,54131071,54132866	0.835920
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	78499920	78499942	78499921	+	RAMPAGE_only	10	15	26	1.271027	3.863465	chr15	78499850	78499997	SINE|Alu|AluSc	-	chr15	78438421	78501456	IREB2|NM_001320942.1	+	78438421,78439794,78462921,78465250,78466270,78470531,78471740,78473241,78476187,78478296,78483317,78484760,78485704,78487732,78488179,78488646,78490421,78490618,78493908,78494141,78497125,78498032	78438856,78439881,78463087,78465388,78466489,78470601,78471924,78473381,78476359,78478397,78483434,78484920,78485840,78487817,78488336,78488771,78490526,78490761,78494056,78494264,78497311,78501456	0.961538
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	59619894	59619935	59619922	+	High_confidence	668	720	2814	137.564264	6.201882	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.981521
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	28059439	28059488	28059487	-	High_confidence	5	5	25	1.222142	3.813661	chr3	28059242	28065270	LINE|L1|L1PA3	+	chr3	27997543	28059268	LINC01967|ENST00000437506.2	-	27997543,28010469,28028508,28059241	27997868,28010564,28028603,28059268	0.600000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	162036533	162036575	162036559	+	High_confidence	13	13	62	3.030911	4.536243	chr5	162030925	162036952	LINE|L1|L1PA2	-	chr5	162036770	162097662	GABRG2|ENST00000640757.1	+	162036770,162093827,162095494,162097637	162036954,162093979,162095562,162097662	0.612903
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	37426597	37426624	37426623	+	RAMPAGE_only	11	11	26	1.271027	3.393741	chr9	37426667	37426970	SINE|Alu|AluSx3	+	chr9	37427705	37436989	GRHPR|ENST00000497693.1	+	37427705,37436660	37432138,37436989	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	35432451	35432476	35432451	-	High_confidence	4	5	10	0.488857	2.846439	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	46239680	46239796	46239680	-	High_confidence	18	18	152	7.430621	4.841985	chr12	46239310	46239631	SINE|Alu|AluSz	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.980263
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	51170211	51170215	51170211	+	High_confidence	2793	2974	4525	221.207638	6.807563	chr13	51169865	51170314	LTR|ERV1|LTR7	+	chr13	51169452	51188169	MSTRG.14071.1	+	51169452,51174548,51174994	51172418,51174972,51188169	0.978343
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	95551376	95551468	95551459	-	High_confidence	162	164	1028	50.254465	7.154690	chr12	95551437	95551690	LINE|L2|L2b	+	chr12	95516559	95551490	USP44|ENST00000258499.7	-	95516559,95520996,95524679,95528806,95532828,95551271	95518353,95521202,95524788,95529002,95534326,95551490	0.883268
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	4509294	4509330	4509329	-	High_confidence	5	5	16	0.782171	2.682589	chr12	4508895	4514901	LINE|L1|L1PA2	+	chr12	4500314	4509350	C12orf4|ENST00000509318.2	-	4500314,4505305,4508877	4500340,4505380,4509350	0.625000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	20123052	20123102	20123096	-	RAMPAGE_only	93	93	382	18.674324	6.889986	chr7	20121168	20124011	LTR|ERV1|HERVH-int	+	chr7	19906821	20125162	MSTRG.47883.1	-	19906821,19919865,19960921,19968136,20028918,20045502,20125079	19919260,19919977,19960994,19968395,20028959,20045561,20125162	0.620419
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	54200426	54200558	54200557	+	High_confidence	9	9	64	3.128683	5.145227	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.593750
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	53504345	53504382	53504381	-	High_confidence	47	48	121	5.915166	5.976259	chr10	53504277	53504727	LTR|ERV1|LTR7	-	chr10	53484409	53504351	MSTRG.5857.2	-	53484409,53504161	53487881,53504351	0.603306
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	75765781	75765782	75765781	+	RAMPAGE_only	22	31	31	1.515456	3.716631	chr14	75765580	75765867	SINE|Alu|AluJb	+	chr14	75745487	75886937	TTLL5|ENST00000554510.5	+	75745487,75752892,75757830,75764614,75766061,75771733,75775483,75776746,75779574,75782486,75783146,75792915,75820006,75863666,75882684,75886699	75745581,75752955,75757869,75764772,75766368,75771854,75775630,75776850,75779702,75782573,75783530,75793100,75820161,75863862,75882902,75886937	0.870968
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	73024571	73024572	73024571	+	RAMPAGE_only	11	13	17	0.831056	3.499228	chr8	73024109	73024583	LINE|L1|L1ME3C	+	chr8	73022232	73038798	TERF1|ENST00000522018.1	+	73022232,73024821,73026939,73032041,73038705	73022302,73024971,73027052,73032133,73038798	0.764706
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	88052515	88052566	88052527	-	High_confidence	11	11	72	3.519768	5.311947	chr5	88052330	88058345	LINE|L1|L1PA2	+	chr5	87866931	88052794	MSTRG.42298.1	-	87866931,88047588,88052285	87867876,88047694,88052794	0.541667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	35870418	35870456	35870438	+	High_confidence	6	7	21	1.026599	3.403702	chr19	35870369	35870451	DNA|hAT-Ac|OldhAT1	+	chr19	35870453	35874620	APLP1|ENST00000592316.1	+	35870453,35871236,35871611,35871857,35872482,35873638,35874503	35871028,35871349,35871745,35872036,35872613,35873713,35874620	0.952381
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	163907831	163907868	163907831	+	High_confidence	16	19	118	5.768509	3.614184	chr3	163907529	163907935	LTR|ERV1|LTR7	+	chr3	163907847	163918223	MSTRG.37466.1	+	163907847,163917106,163918104	163908083,163917429,163918223	0.991525
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	87042101	87042123	87042110	-	High_confidence	34	34	110	5.377423	5.808690	chr9	87041882	87047900	LINE|L1|L1PA3	+	chr9	87008450	87042126	LOC440173|NR_027471.1	-	87008450,87041870	87010210,87042126	0.618182
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	112956841	112956853	112956852	+	High_confidence	4	4	11	0.537742	2.845351	chr1	112956705	112956908	SINE|MIR|MIR	+	chr1	112956460	112975430	SLC16A1-AS1|ENST00000428411.5	+	112956460,112960476,112968034	112957722,112960575,112975430	0.727273
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	14710262	14710263	14710262	-	High_confidence	2063	2091	2336	114.196916	6.509329	chr12	14710158	14710640	LTR|ERV1|LTR7	-	chr12	14697151	14710628	MSTRG.10904.1	-	14697151	14710628	0.981592
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	56388701	56388702	56388701	-	RAMPAGE_only	8	8	11	0.537742	3.121928	chr20	56388529	56388834	SINE|Alu|AluSq2	+	chr20	56383110	56392131	AURKA|ENST00000422322.5	-	56383110,56384269,56386256,56388155,56390555,56391942	56383176,56384324,56386533,56388202,56390665,56392131	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	56735591	56735632	56735607	-	High_confidence	115	129	800	39.108533	7.055979	chr13	56735426	56736646	LTR|ERV1|LTR12C	+	chr13	56589758	56735650	MSTRG.14373.1	-	56589758,56590080,56735396	56590056,56616376,56735650	0.591250
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	50172521	50172545	50172544	+	High_confidence	4	5	9	0.439971	2.641604	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172549	50173370	LINC01273|ENST00000427333.5	+	50172549,50172922,50173201	50172788,50173017,50173370	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	94641906	94641907	94641906	+	High_confidence	24	24	28	1.368799	4.469670	chr11	94641600	94642009	LTR|ERV1|LTR7	+	chr11	94641906	94651628	AP000943.2|ENST00000544019.5	+	94641906,94647334,94647465,94648016,94648259,94650473,94651476	94641944,94647390,94647578,94648108,94648388,94650537,94651628	0.535714
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	65233395	65233411	65233410	-	RAMPAGE_only	4	5	14	0.684399	2.873141	chr16	65232144	65234891	LTR|ERV1|HERVH-int	-	chr16	65190972	65234914	AC009055.2|ENST00000567058.1	-	65190972,65203898,65233014,65234885	65191215,65204092,65233885,65234914	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	125394016	125394096	125394016	-	High_confidence	3	5	23	1.124370	4.061482	chrX	125391177	125394107	LTR|ERV1|HERVH-int	-	chrX	125381842	125394194	MSTRG.57391.2	-	125381842,125393961	125387305,125394194	0.652174
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	74866896	74866965	74866964	-	High_confidence	5	5	25	1.222142	4.168296	chr8	74866519	74872545	LINE|L1|L1PA2	+	chr8	74844847	74866936	AC011632.1|ENST00000522914.1	-	74844847,74845876,74866517,74866864	74845035,74845953,74866634,74866936	0.520000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	93734897	93734917	93734909	-	High_confidence	16	16	46	2.248741	4.331940	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730282	93734661	TAF1D|ENST00000525928.5	-	93730282,93730676,93731149,93731752,93732243,93733086,93733349	93730447,93730712,93731216,93731799,93732291,93733121,93734661	0.847826
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	51172283	51172413	51172380	-	High_confidence	16	16	76	3.715311	5.381288	chr13	51170316	51173284	LTR|ERV1|HERVH-int	+	chr13	51082847	51172388	LINC00371|NR_102431.2	-	51082847,51085318,51087927,51113192,51172252	51084325,51085559,51088075,51113222,51172388	0.539474
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	94607759	94607876	94607790	+	RAMPAGE_only	11	20	71	3.470882	4.636538	chr10	94607719	94608017	SINE|Alu|AluSx	-	chr10	94596879	94613905	MSTRG.6740.17	+	94596879,94601527,94609267	94597111,94609008,94613905	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	129486648	129486649	129486648	+	High_confidence	8	9	12	0.586628	3.022055	chr3	129486534	129486712	LINE|L2|L2c	-	chr3	129487505	129520355	IFT122|ENST00000511425.5	+	129487505,129488256,129492140,129499901,129502710,129504318,129506408,129507667,129512311,129514388,129515487,129517468,129519106,129519567,129520175	129487927,129488397,129492194,129500068,129502882,129504421,129506549,129507762,129512412,129514554,129515599,129517594,129519186,129519732,129520355	0.916667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147874279	147874349	147874348	-	High_confidence	13	13	54	2.639826	4.704349	chr5	147874077	147874526	LTR|ERV1|LTR7	-	chr5	147856041	147874184	MSTRG.43556.2	-	147856041,147873929	147873044,147874184	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	97217069	97217087	97217086	+	RAMPAGE_only	6	7	13	0.635514	3.022055	chr9	97216575	97218235	LTR|ERV1|HERVH-int	+	chr9	97214744	97220663	MSTRG.54562.2	+	97214744,97219583	97217380,97220663	0.923077
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	170094793	170094810	170094793	+	RAMPAGE_only	3	3	12	0.586628	3.095795	chr1	170089171	170095201	LINE|L1|L1PA3	-	chr1	170146000	170167790	METTL11B|ENST00000439373.2	+	170146000,170160517,170166501,170167485	170146261,170160693,170166751,170167790	0.583333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	114040387	114040388	114040387	+	High_confidence	269	273	341	16.670012	6.474347	chrX	114040091	114040488	LTR|ERV1|LTR7	+	chrX	114040372	114056734	MSTRG.57251.1	+	114040372,114042335,114055650	114040636,114042533,114056734	0.621701
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	207634129	207634147	207634129	+	RAMPAGE_only	6	6	19	0.928828	3.308271	chr1	207633750	207634199	LTR|ERV1|LTR7	-	chr1	207496242	207640212	CR1|ENST00000367053.6	+	207496242,207505903,207506713,207511568,207523610,207526752,207527020,207528715,207532179,207533408,207534196,207539980,207560738,207563863,207564131,207565837,207567823,207569058,207569846,207575594,207577804,207580239,207580510,207581917,207584648,207587385,207588674,207607250,207609289,207611676,207611938,207614403,207616574,207618070,207619879,207621972,207622992,207630516,207639396	207496388,207506083,207506813,207511654,207524009,207526929,207527123,207528801,207532398,207533588,207534296,207540066,207561137,207564040,207564234,207565923,207568042,207569238,207569946,207575680,207578203,207580416,207580613,207582003,207584876,207587565,207588774,207607336,207609688,207611853,207612041,207614489,207616802,207618247,207620065,207621996,207623068,207630621,207640212	0.578947
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	87039827	87039841	87039827	-	High_confidence	3	3	8	0.391085	3.000000	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86880015	87040240	MSTRG.49082.3	-	86880015,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040240	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	53614546	53614553	53614552	-	RAMPAGE_only	11	11	22	1.075485	3.499458	chrX	53614388	53614509	SINE|MIR|MIR3	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	48258626	48258839	48258767	-	RAMPAGE_only	24	32	149	7.283964	5.435546	chr14	48257705	48260538	LTR|ERV1|HERVH-int	-	chr14	48224573	48260637	MSTRG.15605.5	-	48224573,48229021,48258584	48228993,48235618,48260637	0.872483
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	55583790	55583807	55583800	-	High_confidence	3	3	13	0.635514	2.873141	chr13	55583637	55584087	LTR|ERV1|LTR7	-	chr13	55556518	55583779	MSTRG.14306.8	-	55556518,55577089,55583489	55576966,55581586,55583779	0.846154
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	122222348	122222350	122222349	+	High_confidence	379	431	610	29.820256	6.740734	chrX	122222003	122222454	LTR|ERV1|LTR7	+	chrX	122222207	122522579	MSTRG.57378.2	+	122222207,122522539	122231647,122522579	0.983607
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	59328442	59328443	59328442	-	High_confidence	4	5	7	0.342200	2.584963	chr12	59325540	59328502	LTR|ERV1|HERVH-int	-	chr12	59317712	59328657	MSTRG.11956.1	-	59317712	59328657	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	35739146	35739147	35739146	-	RAMPAGE_only	20	22	23	1.124370	3.697846	chr1	35738800	35739098	SINE|Alu|AluSg	-	chr1	35736280	35737843	CLSPN|ENST00000466308.1	-	35736280,35736913,35737338,35737697	35736606,35737075,35737421,35737843	0.565217
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	24752357	24752359	24752358	-	RAMPAGE_only	3	5	7	0.342200	2.521641	chr22	24752115	24752710	LTR|ERV1|LTR9D	+	chr22	24719033	24762523	PIWIL3|ENST00000616349.4	-	24719033,24719747,24723129,24724886,24725444,24727949,24728176,24734083,24735707,24748906,24749403,24749692,24751386,24754013,24754783,24755783,24756490,24757907,24759868,24762397	24719588,24719895,24723255,24725037,24725515,24728053,24728401,24734156,24735892,24749021,24749521,24749819,24751498,24754217,24754864,24755905,24756705,24758039,24759989,24762523	0.571429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	42862943	42862944	42862943	-	RAMPAGE_only	16	23	23	1.124370	4.175736	chr13	42862640	42862931	LINE|L2|L2a	-	chr13	42836602	42872802	MSTRG.13907.2	-	42836602,42842798,42870600	42842551,42868464,42872802	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	46149415	46149424	46149423	-	RAMPAGE_only	5	5	9	0.439971	3.169925	chr17	46149423	46149641	DNA|hAT-Charlie|MER58A	-	chr17	46134961	46223685	MSTRG.22394.33	-	46134961,46146855,46170854,46223670	46146541,46152966,46172232,46223685	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	112646158	112646159	112646158	+	RAMPAGE_only	7	8	10	0.488857	2.921928	chr4	112645995	112646266	SINE|Alu|AluSx3	-	chr4	112637455	112657592	LARP7|NM_015454.2	+	112637455,112644667,112646350,112646587,112646790,112647033,112647198,112647689,112649534,112650460,112653076,112654067,112657246	112637603,112644871,112646451,112646671,112646955,112647127,112647549,112647834,112649686,112650582,112653236,112654159,112657592	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	106456822	106456832	106456822	+	RAMPAGE_only	4	4	8	0.391085	2.500000	chr9	106456509	106457125	LTR|ERV1|MER4A	-	chr9	106450815	106604795	LINC01505|ENST00000425709.1	+	106450815,106558471,106588376,106603755	106450888,106558583,106588464,106604795	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	130758754	130758792	130758791	-	High_confidence	70	70	131	6.404022	4.914918	chr11	130758687	130759137	LTR|ERV1|LTR7	-	chr11	130756753	130758774	MSTRG.10234.1	-	130756753,130758539	130756890,130758774	0.839695
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	196905964	196905975	196905974	-	RAMPAGE_only	3	3	8	0.391085	2.807355	chr2	196905587	196911636	LINE|L1|L1HS	+	chr2	196835183	196926655	PGAP1|ENST00000423035.5	-	196835183,196842720,196843887,196844523,196845881,196847002,196847946,196864986,196870940,196872440,196872959,196873527,196873684,196875745,196880075,196885423,196885833,196890827,196892345,196893139,196897130,196898316,196902584,196912881,196916417,196919996,196922102,196926469	196841372,196842825,196844075,196844574,196846017,196847200,196848037,196865080,196870979,196872549,196873026,196873579,196873758,196875821,196880153,196885475,196885880,196890911,196892401,196893245,196897197,196898369,196902742,196913053,196916593,196920150,196922186,196926655	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	12723481	12723498	12723497	-	High_confidence	9	10	29	1.417684	3.039149	chr19	12723376	12723508	SINE|MIR|MIR	+	chr19	12719097	12723932	TNPO2|ENST00000589337.5	-	12719097,12719260,12720878,12723248,12723772	12719178,12719336,12720990,12723360,12723932	0.965517
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	36330416	36330421	36330416	-	High_confidence	8	8	18	0.879942	3.392147	chr19	36327346	36330482	LTR|ERV1|HERVS71-int	-	chr19	36324936	36330447	MSTRG.25853.9	-	36324936,36330252	36327170,36330447	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	102431241	102431263	102431247	-	High_confidence	7	8	26	1.271027	3.938722	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.846154
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	70255628	70255632	70255628	+	High_confidence	40	40	81	3.959739	5.051960	chr14	70255023	70256182	LTR|ERV1|LTR12C	+	chr14	70255642	70291859	MSTRG.16133.1	+	70255642,70275295,70291476	70256189,70275360,70291859	0.938272
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	119283248	119283261	119283248	-	RAMPAGE_only	3	3	14	0.684399	2.753434	chr9	119283208	119283419	DNA|hAT-Charlie|MER5A	+	chr9	119213619	119369425	BRINP1|ENST00000373964.2	-	119213619,119238654,119242046,119248959,119313137,119369055	119214155,119238760,119242216,119249150,119313405,119369425	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	13357679	13357680	13357679	-	High_confidence	1085	1097	1306	63.844680	5.112348	chr16	13357575	13358061	LTR|ERV1|LTR7	-	chr16	13352035	13357671	MSTRG.19415.2	-	13352035	13357671	0.992343
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	39485770	39485798	39485794	+	High_confidence	7	8	21	1.026599	3.403989	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	12667948	12667986	12667982	-	High_confidence	518	546	3601	176.037283	7.873855	chr5	12667881	12668330	LTR|ERV1|LTR7	-	chr5	12648258	12668004	MSTRG.41078.4	-	12648258,12667735	12663073,12668004	0.788948
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	67620069	67620090	67620089	+	High_confidence	6	8	13	0.635514	2.855389	chr11	67618852	67620425	LTR|ERV1|LTR12C	+	chr11	67619973	67628431	MSTRG.8925.1	+	67619973,67626053	67620536,67628431	0.692308
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	78457820	78457824	78457823	+	High_confidence	6	8	12	0.586628	2.913977	chr5	78452185	78458210	LINE|L1|L1PA2	-	chr5	78457792	78476829	SCAMP1|ENST00000506858.2	+	78457792,78459244,78475503	78457951,78459362,78476829	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	94610654	94610716	94610715	+	RAMPAGE_only	17	17	66	3.226454	4.998643	chr10	94610590	94610890	SINE|Alu|AluSq2	-	chr10	94596879	94613905	MSTRG.6740.17	+	94596879,94601527,94609267	94597111,94609008,94613905	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	9564335	9564336	9564335	-	RAMPAGE_only	259	261	309	15.105671	6.119451	chr19	9564203	9564410	SINE|Alu|AluJr4	+	chr19	9560352	9584497	ZNF121|ENST00000586602.5	-	9560352,9567647,9568094,9569001,9584185,9584460	9567109,9567705,9568175,9569082,9584348,9584497	0.993528
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	101308452	101308497	101308452	+	High_confidence	14	14	40	1.955427	3.431624	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308345	101310985	AC006329.1|ENST00000419422.1	+	101308345,101310483	101308548,101310985	0.950000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	58424075	58424096	58424075	-	RAMPAGE_only	18	18	30	1.466570	3.146603	chr14	58423952	58424081	LINE|CR1|L3	-	chr14	58408663	58427114	TIMM9|ENST00000556007.6	-	58408663,58410842,58411906,58424007,58427053	58409099,58410938,58411971,58424095,58427114	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	36104872	36104929	36104916	+	High_confidence	70	75	430	21.020836	6.999808	chr21	36104755	36109248	LTR|ERV1|HERVIP10FH-int	+	chr21	36104880	36109690	MSTRG.32730.1	+	36104880,36107581	36105330,36109690	0.895349
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	47227208	47227221	47227220	-	High_confidence	6	8	14	0.684399	2.777363	chr19	47227045	47227213	SINE|MIR|MIR1_Amn	-	chr19	47221644	47227189	BBC3|ENST00000598636.1	-	47221644,47226563	47221918,47227189	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	73964598	73964614	73964598	-	RAMPAGE_only	3	3	9	0.439971	2.725481	chr8	73964514	73964649	SINE|Alu|FLAM_C	+	chr8	73946263	73970637	ELOC|ENST00000519487.5	-	73946263,73955910,73959764,73970578	73946820,73956054,73959818,73970637	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	99892041	99892057	99892056	-	RAMPAGE_only	57	57	106	5.181881	4.479772	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.981132
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	77090843	77090909	77090908	-	RAMPAGE_only	6	6	24	1.173256	4.053509	chr2	77088676	77091793	LTR|ERV1|HERVH-int	+	chr2	76748552	77522273	LRRTM4|ENST00000409884.5	-	76748552,77518317,77521667,77522108	76748916,77519864,77521818,77522273	0.583333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	142030417	142030446	142030445	-	High_confidence	36	38	152	7.430621	6.013683	chr6	142030076	142030610	LTR|ERVL|MLT2A2	-	chr6	141803027	142030432	MSTRG.46972.1	-	141803027,141850131,141900322,141909897,142030162	141824432,141850160,141900410,141910011,142030432	0.697368
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	144610817	144610844	144610843	-	RAMPAGE_only	50	51	131	6.404022	4.975241	chr6	144610594	144610882	SINE|Alu|AluSq10	+	chr6	144598195	144599768	MSTRG.47014.1	-	144598195,144599719	144598765,144599768	0.862595
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	43124824	43124835	43124834	-	High_confidence	3	3	8	0.391085	2.500000	chr17	43124781	43124980	SINE|Alu|AluSx	-	chr17	43045677	43125288	BRCA1|ENST00000461221.5	-	43045677,43047642,43049120,43051062,43057051,43063332,43063873,43067607,43070927,43074330,43076487,43082403,43090943,43091434,43095845,43097243,43099774,43104121,43104867,43106477,43115725,43124016,43125181	43045802,43047703,43049194,43051117,43057135,43063373,43063951,43067695,43071238,43074521,43076614,43082575,43091032,43094860,43095922,43097289,43099877,43104261,43104956,43106533,43115779,43124115,43125288	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	23372383	23372403	23372383	-	RAMPAGE_only	3	3	11	0.537742	3.095795	chr21	23372255	23372412	DNA|hAT-Charlie|Charlie6	-	chr21	23361103	23384835	D21S2088E|NR_040254.1	-	23361103,23364037,23372326,23372947,23384687	23362239,23364193,23372448,23373084,23384835	0.636364
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	126600248	126600249	126600248	+	High_confidence	95	103	114	5.572966	5.819707	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	0.956140
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	109343540	109343557	109343555	+	High_confidence	2	5	8	0.391085	2.750000	chr3	109343485	109343788	SINE|Alu|AluJr	-	chr3	109344424	109357148	MSTRG.36352.2	+	109344424,109352998	109347173,109357148	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	109316396	109316421	109316417	-	High_confidence	9	12	60	2.933140	5.166293	chr3	109316062	109316450	SINE|Alu|AluJr	-	chr3	109293787	109316517	DPPA2|ENST00000478945.1	-	109293787,109300370,109304474,109308031,109309025,109309169,109312544,109314509,109316283	109294004,109300435,109304670,109308293,109309079,109309330,109312692,109314555,109316517	0.933333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	143281637	143281687	143281669	-	High_confidence	12	12	43	2.102084	4.660058	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281250	MINCR|ENST00000519852.5	-	143280827,143281092	143280997,143281250	0.558140
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	128104823	128104844	128104840	-	RAMPAGE_only	24	24	90	4.399710	5.208644	chr3	128104760	128104822	LINE|CR1|L3	-	chr3	128064781	128101619	RUVBL1|ENST00000472125.5	-	128064781,128097299,128098881,128100594,128101558	128065220,128097498,128098945,128100744,128101619	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	45005805	45005806	45005805	-	High_confidence	9	9	11	0.537742	2.521928	chr1	45004848	45005768	LINE|L2|L2c	-	chr1	45002539	45005588	HECTD3|ENST00000486132.5	-	45002539,45003668,45003854,45004059,45004247,45004599	45003576,45003740,45003936,45004134,45004377,45005588	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	155966273	155966332	155966331	-	RAMPAGE_only	8	9	43	2.102084	4.739991	chr2	155965887	155971915	LINE|L1|L1PA2	+	chr2	155914083	155914334	MSTRG.29495.1	-	155914083	155914334	0.534884
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	54243239	54243250	54243249	-	RAMPAGE_only	9	10	21	1.026599	3.646439	chr1	54243091	54243229	SINE|MIR|MIR3	-	chr1	54226516	54228834	SSBP3|ENST00000528930.5	-	54226516,54228254,54228448,54228747	54227160,54228356,54228477,54228834	0.809524
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	44485565	44485568	44485567	+	High_confidence	94	144	147	7.186193	5.090666	chr21	44485339	44486157	LTR|ERV1|LTR1A2	+	chr21	44485576	44490288	LINC02575|ENST00000449713.1	+	44485576,44490030	44486230,44490288	0.952381
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	68834430	68834491	68834462	+	RAMPAGE_only	4	7	28	1.368799	4.282484	chr16	68834273	68834516	SINE|Alu|AluJr	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.821429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	142684065	142684077	142684076	+	RAMPAGE_only	15	16	26	1.271027	4.084963	chr3	142683987	142684094	LINE|RTE-BovB|MamRTE1	+	chr3	142689629	142698438	PLS1|ENST00000483507.1	+	142689629,142694468,142697952	142689813,142694547,142698438	0.653846
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	90467510	90467512	90467510	+	RAMPAGE_only	3	5	7	0.342200	2.521641	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.714286
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	39810033	39810094	39810033	-	High_confidence	53	53	228	11.145932	6.023973	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.570175
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	11636363	11636370	11636363	-	High_confidence	9	9	17	0.831056	3.280639	chr16	11636210	11636864	LTR|ERV1|LTR9A1	-	chr16	11635556	11636353	MSTRG.19342.22	-	11635556	11636353	0.529412
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	47569866	47569880	47569879	+	RAMPAGE_only	4	4	11	0.537742	3.121928	chr11	47569909	47570209	SINE|Alu|AluJb	+	chr11	47565897	47573461	PTPMT1|ENST00000527079.2	+	47565897,47569699,47571470	47565986,47569891,47573461	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	29963578	29963579	29963578	+	High_confidence	12	15	16	0.782171	3.640224	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	97214859	97214860	97214859	+	High_confidence	1123	1129	1579	77.190466	6.162886	chr9	97214493	97214965	LTR|ERV1|LTR7	+	chr9	97214744	97220663	MSTRG.54562.2	+	97214744,97219583	97217380,97220663	0.982267
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	71081258	71081267	71081258	+	High_confidence	42	42	119	5.817394	5.830378	chr17	71080889	71081392	LTR|ERV1|LTR9D	+	chr17	71081267	71093875	MSTRG.22933.1	+	71081267,71093815	71081681,71093875	0.621849
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	91623984	91623985	91623984	+	High_confidence	608	631	827	40.428446	6.221692	chr4	91623639	91624089	LTR|ERV1|LTR7	+	chr4	91623957	91631215	MSTRG.39524.1	+	91623957,91629240	91624237,91631215	0.568319
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	112999664	112999721	112999664	-	High_confidence	7	7	30	1.466570	4.004364	chr9	112999325	112999997	LTR|ERVL|MER21C	-	chr9	112957742	112999091	ZNF883|ENST00000639709.1	-	112957742,112959125,112959349,112959792,112966649,112968821,112969339,112998120	112958036,112959171,112959451,112959903,112966740,112968941,112969380,112999091	0.966667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	42925353	42925368	42925367	-	High_confidence	3	5	10	0.488857	2.641604	chr21	42925244	42925502	LTR|ERV1|HERVH48-int	-	chr21	42917250	42925598	ERVH48-1|NM_001308491.1	-	42917250,42925345	42919291,42925598	0.900000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	98110122	98110123	98110122	-	RAMPAGE_only	8	9	9	0.439971	2.500000	chr9	98110049	98110173	SINE|MIR|MIR3	-	chr9	98084354	98119198	TRIM14|ENST00000342043.3	-	98084354,98087441,98091908,98094866,98099930,98109888,98118981	98084466,98088005,98092001,98095029,98100164,98109984,98119198	0.555556
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	75223837	75223882	75223876	+	RAMPAGE_only	22	22	75	3.666425	4.475952	chr10	75223579	75224353	LTR|ERVL|MER21B	+	chr10	75229309	75231275	VDAC2|ENST00000460044.1	+	75229309,75230897	75229701,75231275	0.786667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	182738405	182738409	182738408	+	RAMPAGE_only	6	9	13	0.635514	2.855389	chr4	182738424	182738481	SINE|tRNA|LFSINE_Vert	+	chr4	182680323	182755353	TENM3|ENST00000502950.1	+	182680323,182680542,182681813,182688165,182714086,182728964,182730199,182730877,182736807,182738400,182743169,182744142,182751799,182753449,182754384	182680349,182680737,182682014,182688351,182714233,182729181,182730319,182731139,182737075,182738544,182743419,182744163,182752032,182753604,182755353	0.923077
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	50271485	50271488	50271487	+	High_confidence	34	68	68	3.324225	5.019387	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	0.985294
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	125386517	125386520	125386517	-	RAMPAGE_only	8	8	18	0.879942	3.499228	chrX	125386442	125387031	LTR|ERV1|MER41C	+	chrX	125381842	125394194	MSTRG.57391.2	-	125381842,125393961	125387305,125394194	0.944444
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	39627120	39627121	39627120	-	High_confidence	25	25	28	1.368799	3.950212	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	54269051	54269055	54269054	+	High_confidence	7	8	16	0.782171	3.106891	chr13	54268524	54270262	LTR|ERV1|HERVH-int	+	chr13	54268804	54353665	MSTRG.14216.2	+	54268804,54353104	54269407,54353665	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	28188827	28188875	28188827	-	High_confidence	9	11	43	2.102084	4.246439	chr14	28188442	28194470	LINE|L1|L1PA2	+	chr14	28188213	28188866	MSTRG.15158.1	-	28188213	28188866	0.790698
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	186242972	186242977	186242972	+	High_confidence	8	8	15	0.733285	2.610577	chr4	186242759	186244000	LTR|ERV1|HERVH-int	-	chr4	186243011	186258435	MSTRG.40839.12	+	186243011,186244748,186250242,186251218,186251486,186251748,186252016,186254587,186255991,186257225,186258020	186243068,186244806,186250540,186251328,186251649,186251861,186252185,186254763,186256087,186257365,186258435	0.933333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	156666065	156666066	156666065	-	High_confidence	38	38	47	2.297626	4.472424	chr5	156665917	156666885	LTR|ERVK|LTR5_Hs	-	chr5	156657805	156666056	MSTRG.43727.1	-	156657805	156666056	0.957447
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	33453846	33453909	33453846	+	RAMPAGE_only	7	7	27	1.319913	3.783465	chr3	33453276	33454987	LTR|ERV1|LTR12C	+	chr3	33446586	33455868	MSTRG.34848.1	+	33446586,33453035	33447137,33455868	0.925926
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	38380975	38380994	38380993	+	High_confidence	6	6	15	0.733285	3.456565	chr19	38381033	38381157	SINE|MIR|MIR	+	chr19	38380898	38383297	PSMD8|ENST00000590331.1	+	38380898,38381148,38382116,38383252	38380999,38381312,38382228,38383297	0.533333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	167937013	167937014	167937013	-	High_confidence	7	7	9	0.439971	2.503258	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167918067	167937040	MPC2|ENST00000271373.8	-	167918067,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937040	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	39168230	39168253	39168230	+	High_confidence	8	8	14	0.684399	2.807355	chr19	39168210	39168339	SINE|MIR|MIR3	-	chr19	39168610	39179406	PAK4|ENST00000360442.7	+	39168610,39169531,39172917,39173575,39174930,39175311,39176589,39177674,39178423	39168840,39169757,39173376,39174010,39175064,39175438,39176715,39177809,39179406	0.714286
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	16697802	16697877	16697876	-	High_confidence	18	18	53	2.590940	5.275090	chr3	16697677	16698178	LTR|ERV1|MER4CL34	-	chr3	16592027	16697860	MSTRG.34468.3	-	16592027,16593654,16594532,16595313,16596749,16596987,16597489,16598086,16598451,16637884,16647573,16697378	16592148,16593768,16594583,16595385,16596889,16597051,16597541,16598178,16598598,16638085,16648612,16697860	0.905660
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	46904014	46904038	46904019	-	RAMPAGE_only	4	4	16	0.782171	3.189898	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.937500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	29142636	29142680	29142651	+	High_confidence	25	42	168	8.212792	5.310009	chr10	29142530	29143374	LTR|ERV1|LTR1A2	+	chr10	29142647	29144035	MSTRG.5596.1	+	29142647,29143607	29143087,29144035	0.940476
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	188033727	188033731	188033730	+	High_confidence	5	5	10	0.488857	2.921928	chr2	188033497	188033914	LTR|ERV1|LTR7	+	chr2	188033794	188040599	MSTRG.30176.2	+	188033794,188035602,188039129	188034060,188035756,188040599	0.900000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	101299586	101299643	101299642	+	High_confidence	2898	3471	7330	358.331931	6.480856	chr7	101299646	101301210	LINE|L1|L1M2	+	chr7	101299605	101304969	MSTRG.49357.3	+	101299605,101300768,101302798,101304009	101299866,101301049,101303028,101304969	0.930832
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	239629070	239629083	239629070	+	High_confidence	4	4	8	0.391085	2.750000	chr1	239623498	239629523	LINE|L1|L1HS	-	chr1	239629072	239915452	CHRM3|ENST00000255380.8	+	239629072,239632223,239678185,239827251,239907432	239629539,239632286,239678288,239827378,239915452	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	1659356	1659357	1659356	-	RAMPAGE_only	10	10	14	0.684399	3.664498	chr17	1659014	1659325	SINE|Alu|AluSx3	-	chr17	1650630	1684837	PRPF8|ENST00000572621.5	-	1650630,1651107,1651413,1651647,1653541,1653776,1655349,1656391,1656647,1658252,1658525,1659356,1659840,1660431,1660697,1660992,1661270,1661610,1661905,1673080,1673356,1673745,1674441,1675151,1675619,1675927,1676206,1676504,1676975,1677564,1678517,1678761,1679016,1679290,1679608,1680725,1680928,1681477,1681819,1682128,1683532,1684471	1650956,1651310,1651553,1651788,1653683,1654016,1655543,1656565,1656761,1658381,1658763,1659548,1660001,1660578,1660827,1661162,1661406,1661790,1662153,1673197,1673567,1673892,1674680,1675339,1675812,1676054,1676370,1676711,1677172,1677694,1678652,1678881,1679206,1679410,1679799,1680831,1681054,1681690,1682038,1682293,1683701,1684837	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	44808312	44808313	44808312	+	RAMPAGE_only	7	7	9	0.439971	2.503258	chr22	44808310	44808387	LINE|CR1|L3b	+	chr22	44801819	44825551	ARHGAP8|ENST00000498310.1	+	44801819,44808306,44814671,44822370,44825482	44802164,44808438,44814758,44822469,44825551	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	51175007	51175463	51175079	+	RAMPAGE_only	147	155	1051	51.378835	6.583311	chr13	51175008	51175663	LTR|ERVL-MaLR|THE1D-int	+	chr13	51169551	51180967	MSTRG.14071.3	+	51169551,51174797	51170107,51180967	0.998097
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147871461	147871482	147871481	+	High_confidence	6	6	13	0.635514	3.418296	chr5	147871298	147874075	LTR|ERV1|HERVH-int	-	chr5	147871497	147882190	SCGB3A2|ENST00000507160.5	+	147871497,147881445,147882026	147871679,147881648,147882190	0.538462
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	106970563	106971051	106970672	-	RAMPAGE_only	174	207	1728	84.474431	7.195046	chr6	106970529	106970829	SINE|Alu|AluSx1	+	chr6	106969830	106974039	CD24|NM_001291739.1	-	106969830,106973669	106971834,106974039	0.999421
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	42866412	42866785	42866784	-	RAMPAGE_only	55	56	536	26.202717	6.279135	chr13	42866692	42866833	LTR|ERVL|LTR16A	+	chr13	42836602	42872802	MSTRG.13907.2	-	42836602,42842798,42870600	42842551,42868464,42872802	0.996269
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	112422851	112423018	112423017	-	High_confidence	576	620	989	48.347924	6.798867	chr3	112422913	112423365	LTR|ERV1|LTR7	-	chr3	112418432	112423009	MSTRG.36403.1	-	112418432	112423009	0.994944
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	45522778	45522859	45522858	-	High_confidence	66	67	257	12.563616	5.120667	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.980545
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	56785867	56785876	56785867	-	High_confidence	40	45	65	3.177568	4.569549	chr6	56779724	56785868	LINE|L1|L1PA3	-	chr6	56670674	56785879	DST|ENST00000522538.5	-	56670674,56699652,56701887,56704279,56735227,56785770	56670807,56699745,56701965,56704369,56735289,56785879	0.923077
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	61517382	61517424	61517407	+	RAMPAGE_only	5	5	19	0.928828	3.572431	chr4	61517137	61518029	DNA|hAT-Charlie|Charlie17b	+	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.947368
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	157566724	157566754	157566724	-	RAMPAGE_only	4	4	19	0.928828	3.836592	chr2	157566353	157572377	LINE|L1|L1HS	+	chr2	157526766	157597560	ACVR1C|NM_001111031.1	-	157526766,157538572,157541089,157542705,157544444,157550161,157556092,157587186,157597359	157534043,157538703,157541214,157542862,157544612,157550392,157556332,157587417,157597560	0.736842
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	128709075	128709090	128709089	+	High_confidence	8	10	14	0.684399	3.392747	chr7	128708844	128709287	LTR|ERVL-MaLR|MLT1J	+	chr7	128709074	128731623	FAM71F1|ENST00000484425.6	+	128709074,128713922,128716812,128718891,128723196,128724768,128726833,128729901,128731099	128709207,128714074,128716997,128719083,128723318,128725072,128726871,128730069,128731623	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	571529	571530	571529	+	High_confidence	5	5	8	0.391085	2.500000	chr19	571376	571615	LTR|ERV1|HERVIP10B3-int	-	chr19	571309	583493	BSG|ENST00000346916.8	+	571309,580378,580645,581314,582305,582513,582749	571579,580461,580782,581591,582330,582582,583493	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	167937054	167937056	167937054	-	High_confidence	5	7	10	0.488857	2.725481	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167918067	167937040	MPC2|ENST00000271373.8	-	167918067,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937040	0.900000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	87329277	87329278	87329277	-	High_confidence	18	19	22	1.075485	4.011365	chr6	87323278	87329278	LINE|L1|L1PA3	-	chr6	87282977	87329278	GJB7|ENST00000525899.5	-	87282977,87322865,87329137	87284939,87323043,87329278	0.590909
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	51172066	51172087	51172086	-	High_confidence	5	6	11	0.537742	3.321928	chr13	51170316	51173284	LTR|ERV1|HERVH-int	+	chr13	51082847	51172222	LINC00371|NR_102432.2	-	51082847,51085318,51087927,51171987	51084325,51085559,51088075,51172222	0.636364
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	12419888	12419952	12419903	+	High_confidence	19	20	51	2.493169	5.241053	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12419891	12427322	PRELID3A|ENST00000589952.5	+	12419891,12420324,12421539,12427040,12427220	12419947,12420493,12421629,12427111,12427322	0.686275
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	31233178	31233212	31233211	+	High_confidence	6	6	14	0.684399	2.556657	chr17	31233237	31233291	LINE|L2|L2a	+	chr17	31233029	31261794	NF1|ENST00000466819.5	+	31233029,31235610,31235917,31248983,31252937,31257686,31258343,31259031,31260368,31261710	31233213,31235772,31236021,31249119,31253000,31257726,31258502,31259129,31260515,31261794	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	55618850	55618870	55618850	-	High_confidence	7	8	27	1.319913	3.884155	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.962963
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	131510239	131510250	131510249	-	High_confidence	20	30	61	2.982026	4.433785	chr7	131510213	131510511	SINE|Alu|AluSx3	+	chr7	131505888	131509402	PODXL|ENST00000487965.1	-	131505888,131506259,131506578,131508950	131506035,131506321,131506726,131509402	0.672131
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	88456759	88456827	88456759	-	RAMPAGE_only	9	9	43	2.102084	3.779893	chr4	88456468	88456764	SINE|Alu|AluY	-	chr4	88415842	88442553	MSTRG.39437.1	-	88415842,88419301,88419573,88420355,88442440	88416079,88419408,88419712,88420428,88442553	0.930233
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	32175875	32175876	32175875	+	RAMPAGE_only	9	9	9	0.439971	2.725481	chr1	32175816	32176106	SINE|Alu|AluSx1	+	chr1	32156861	32176568	MSTRG.903.4	+	32156861,32157345,32158266,32159399,32160614,32161946,32162360,32163234,32166104,32167168,32169881,32170706	32156927,32157445,32158361,32159531,32160703,32162046,32162524,32163313,32166230,32167296,32170060,32176568	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	125264290	125264291	125264290	-	High_confidence	42	43	55	2.688712	4.770281	chr7	125264190	125264637	LTR|ERV1|LTR7	-	chr7	125229578	125264291	LOC101928254|NR_110182.1	-	125229578,125246343,125248300,125249979,125264042	125230841,125246530,125248441,125250057,125264291	0.709091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	17755324	17755333	17755332	+	High_confidence	6	7	14	0.684399	2.549523	chr1	17755152	17755695	LTR|ERVL|LTR41	+	chr1	17755312	17827063	ACTL8|NM_030812.2	+	17755312,17822984,17825766	17755504,17823356,17827063	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	36746170	36746203	36746170	-	RAMPAGE_only	33	34	79	3.861968	4.373948	chr19	36745882	36746139	LTR|ERV1|MER41A	-	chr19	36743477	36772814	ZNF850|NM_001267779.1	-	36743477,36762304,36762594,36772724	36750804,36762431,36762675,36772814	0.974684
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147874942	147874995	147874973	+	RAMPAGE_only	3	3	12	0.586628	3.027169	chr5	147874856	147875377	LTR|ERVL|MER74A	-	chr5	147872017	147882191	SCGB3A2|ENST00000514688.1	+	147872017,147881445,147882026	147872321,147881648,147882191	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	45522975	45523004	45522977	-	High_confidence	20	27	67	3.275340	4.120681	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45514506	45523047	PRDX1|ENST00000424390.1	-	45514506,45514872,45515653,45518937,45522777	45514637,45514995,45515807,45519054,45523047	0.955224
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	78568363	78568395	78568363	-	High_confidence	18	22	38	1.857655	4.681881	chr7	78567616	78568734	LINE|L2|L2a	+	chr7	78518063	78568364	MAGI2|ENST00000635863.1	-	78518063,78521429,78567948,78568094	78519126,78521645,78568004,78568364	0.815789
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	4355592	4355593	4355592	-	High_confidence	375	378	378	18.478782	5.492904	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.923280
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	20658392	20658414	20658392	+	High_confidence	3	3	9	0.439971	2.750000	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	147517874	147517875	147517874	-	High_confidence	9	11	13	0.635514	3.238901	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147258884	147517875	LINC00624|ENST00000619867.4	-	147258884,147384667,147408589,147514337,147515520,147517442	147260976,147384863,147408689,147514448,147515676,147517875	0.923077
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	54269313	54269339	54269313	+	High_confidence	6	6	11	0.537742	2.521928	chr13	54268524	54270262	LTR|ERV1|HERVH-int	+	chr13	54268804	54353665	MSTRG.14216.2	+	54268804,54353104	54269407,54353665	0.727273
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	52039627	52039657	52039656	+	RAMPAGE_only	5	5	20	0.977713	3.541446	chr10	52039561	52039755	DNA|hAT|MamRep38	-	chr10	52036807	52298350	MSTRG.5939.10	+	52036807,52054483,52062536,52133839,52161888,52251569,52271349,52272391,52280788,52282152,52288725,52288930,52290223,52293801	52037112,52054561,52062631,52133905,52161963,52251666,52271489,52272481,52280930,52282316,52288848,52288993,52290290,52298350	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	114425689	114425780	114425779	-	RAMPAGE_only	74	94	180	8.799420	4.883814	chr6	114424805	114427844	LTR|ERV1|HERVH-int	-	chr6	114400515	114427981	MSTRG.46510.1	-	114400515,114409606	114402272,114427981	0.988889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	53684583	53684610	53684609	-	High_confidence	3	4	10	0.488857	2.646439	chr15	53684199	53690229	LINE|L1|L1PA3	+	chr15	53665691	53684627	WDR72|ENST00000567575.1	-	53665691,53684145	53665768,53684627	0.900000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	7877986	7878016	7878015	+	High_confidence	21	22	34	1.662113	4.373796	chr2	7875014	7878438	LTR|ERV1|HERVH-int	-	chr2	7878002	7893848	MSTRG.26957.1	+	7878002,7883431,7891272	7878481,7883559,7893848	0.911765
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	36105162	36105195	36105162	+	High_confidence	6	9	22	1.075485	3.516028	chr21	36104755	36109248	LTR|ERV1|HERVIP10FH-int	+	chr21	36104880	36109690	AP000688.2|ENST00000422473.1	+	36104880,36107597	36105123,36109690	0.772727
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	87039869	87039901	87039869	-	High_confidence	11	12	19	0.928828	3.536887	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86880015	87040240	MSTRG.49082.3	-	86880015,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040240	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	132285531	132285546	132285531	-	High_confidence	6	7	13	0.635514	3.392747	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.692308
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147871845	147871878	147871845	+	High_confidence	5	6	32	1.564341	4.389365	chr5	147871298	147874075	LTR|ERV1|HERVH-int	-	chr5	147872017	147882191	SCGB3A2|ENST00000514688.1	+	147872017,147881445,147882026	147872321,147881648,147882191	0.937500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	67818311	67818353	67818321	-	High_confidence	11	12	37	1.808770	3.931502	chr5	67817944	67823959	LINE|L1|L1PA3	+	chr5	67699450	67818322	AC106798.1|ENST00000506819.1	-	67699450,67701490,67817939,67818279	67699725,67701652,67818048,67818322	0.702703
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	82879742	82879787	82879742	-	RAMPAGE_only	7	8	31	1.515456	4.257111	chr9	82879571	82879936	LTR|ERVL-MaLR|THE1B	-	chr9	82744066	82744792	RPS6P12|ENST00000432491.1	-	82744066	82744792	0.548387
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	140700445	140700452	140700445	+	High_confidence	784	955	1995	97.526903	5.613032	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.980952
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	4570952	4570957	4570952	+	RAMPAGE_only	8	9	15	0.733285	3.373557	chr16	4570919	4571006	SINE|Alu|AluSz	+	chr16	4556489	4600714	C16orf96|ENST00000444310.4	+	4556489,4571560,4574708,4574971,4575173,4578939,4580014,4587038,4588166,4591665,4592304,4593223,4594350,4594703,4599283,4600099	4556909,4571665,4574789,4575058,4576635,4579025,4580125,4587113,4588331,4591784,4592367,4593316,4594510,4594803,4599364,4600714	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrY	13889318	13889319	13889318	+	RAMPAGE_only	9	9	9	0.439971	2.725481	chrY	13889348	13889401	LTR|ERV1|HERV9-int	+	chrY	13753097	13900170	MSTRG.57957.4	+	13753097,13754639,13790918,13858516,13859667,13869066,13871632,13887257,13896814	13753159,13754789,13790966,13858646,13859821,13869128,13871798,13889459,13900170	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	94238091	94238160	94238091	+	High_confidence	3	4	19	0.928828	3.892407	chr11	94232524	94238528	LINE|L1|L1PA2	-	chr11	94238149	94279206	AP002784.1|ENST00000515097.2	+	94238149,94278764	94238277,94279206	0.631579
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	58927709	58927738	58927737	+	High_confidence	3	6	16	0.782171	3.906891	chr11	58927656	58928383	LTR|ERVK|HERVK22-int	-	chr11	58927712	58956430	MSTRG.8562.6	+	58927712,58943542,58947045,58947857,58954769,58955175,58955609	58927829,58943666,58947165,58947965,58954896,58955353,58956430	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	92440551	92440571	92440551	+	High_confidence	3	3	10	0.488857	2.921928	chr4	92440000	92440659	LTR|ERV1|HERVH-int	-	chr4	92440527	93774553	MSTRG.39531.5	+	92440527,92590130,93084994,93110747,93207403,93216737,93224613,93238370,93395606,93422770,93455661,93490638,93515215,93626268,93769209,93772075	92442310,92590286,93085279,93110953,93207457,93216911,93224775,93238490,93395708,93422968,93455974,93490777,93515411,93626435,93769450,93774553	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	32620152	32620165	32620152	+	RAMPAGE_only	9	9	15	0.733285	3.373557	chr15	32620202	32620425	SINE|Alu|AluJb	+	chr15	32615570	32637903	ARHGAP11A|ENST00000543522.5	+	32615570,32615804,32620107,32623491,32624172,32625079,32625486,32628727,32629594,32632978,32633932,32635776,32636256	32615607,32615918,32620178,32623588,32624426,32625243,32625633,32628802,32629762,32633108,32634041,32635915,32637903	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	116445526	116445673	116445595	-	High_confidence	19	19	90	4.399710	5.642678	chr11	116445411	116445905	LTR|Gypsy|MamGypLTR2c	-	chr11	115884146	116445832	MSTRG.9894.1	-	115884146,116320216,116445236	115884363,116320439,116445832	0.766667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	232890999	232891016	232890999	-	High_confidence	2	2	6	0.293314	2.584963	chr2	232890857	232891264	LINE|L2|L2c	+	chr2	232882228	232890980	NGEF|ENST00000424488.5	-	232882228,232883310,232883980,232885279,232888032,232890933	232882265,232883466,232884144,232885369,232888107,232890980	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	52615423	52615444	52615443	-	High_confidence	6	6	21	1.026599	3.172811	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	29032354	29032371	29032370	+	RAMPAGE_only	4	4	8	0.391085	3.000000	chr17	29032375	29032482	SINE|MIR|MIRc	+	chr17	29042899	29057218	PIPOX|NM_016518.2	+	29042899,29044858,29052919,29053412,29054544,29055062,29055812,29056174	29043339,29045007,29053133,29053595,29054691,29055221,29055888,29057218	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	55268580	55268582	55268581	-	High_confidence	4	9	10	0.488857	2.947703	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	0.900000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	33968463	33968481	33968480	-	High_confidence	16	16	41	2.004312	4.735362	chr21	33968191	33968612	LTR|ERVL-MaLR|MLT1J	-	chr21	33967100	33968573	AP000569.1|ENST00000607953.1	-	33967100,33968232	33967350,33968573	0.902439
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	33441368	33441390	33441389	+	High_confidence	6	8	24	1.173256	3.834963	chr5	33441307	33441471	SINE|MIR|MIR3	-	chr5	33441380	33448730	TARS|ENST00000506040.1	+	33441380,33445323,33448540	33441864,33445404,33448730	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	118914629	118914661	118914660	-	RAMPAGE_only	10	10	35	1.710998	4.493150	chr3	118914243	118920271	LINE|L1|L1PA2	+	chr3	118902390	119034728	IGSF11|ENST00000491903.1	-	118902390,118904647,118905595,118926100,118928508,118930111,119034530	118902961,118904714,118905718,118926256,118928716,118930275,119034728	0.628571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	161153526	161153543	161153526	+	High_confidence	5	5	12	0.586628	2.688722	chr1	161153494	161153649	LINE|L1|L1PA6	+	chr1	161153743	161158856	UFC1|NM_016406.3	+	161153743,161156949,161157253,161157616,161158120,161158411	161154120,161157017,161157317,161157693,161158211,161158856	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	151539246	151539271	151539246	-	RAMPAGE_only	5	5	22	1.075485	3.390805	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.590909
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	93835366	93835403	93835402	-	High_confidence	443	454	906	44.290413	7.324366	chr6	93835298	93835749	LTR|ERV1|LTR7	-	chr6	93809350	93835398	MSTRG.46018.1	-	93809350,93833261,93835150	93817013,93833363,93835398	0.774834
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	227534913	227534914	227534913	+	RAMPAGE_only	12	13	16	0.782171	3.323231	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.937500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	20771770	20771773	20771772	+	RAMPAGE_only	8	11	15	0.733285	3.182006	chr6	20771580	20771987	LTR|ERVL-MaLR|MSTB	+	chr6	20546340	21232404	CDKAL1|ENST00000378610.1	+	20546340,20548592,20649292,20739518,20758594,20781144,20846074,20955418,21000226,21065047,21108400,21198020,21201109,21230847	20546523,20548705,20649377,20739615,20758643,20781265,20846178,20955585,21000372,21065228,21108463,21198104,21201274,21232404	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	5823952	5823953	5823952	+	High_confidence	67	69	69	3.373111	4.116612	chr19	5823728	5823966	LINE|L2|L2b	+	chr19	5823806	5828324	NRTN|NM_004558.3	+	5823806,5827748	5824334,5828324	0.985507
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	44895990	44895991	44895990	-	RAMPAGE_only	8	9	9	0.439971	2.750000	chr17	44895670	44896205	LINE|L1|L1MC4	-	chr17	44885286	44899049	EFTUD2|ENST00000592701.2	-	44885286,44886584,44894416,44895825,44898974	44885334,44886750,44894525,44895989,44899049	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	129904528	129904529	129904528	-	RAMPAGE_only	18	18	18	0.879942	3.836592	chr8	129904249	129904641	LTR|ERVL|LTR16E2	+	chr8	129849291	129903351	FAM49B|ENST00000639004.1	-	129849291,129849326,129850834,129852161,129854265,129855610,129855674,129862228,129862262,129871374,129879388,129903311	129849324,129849369,129850914,129852278,129854343,129855673,129855747,129862260,129862335,129871496,129879471,129903351	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	30588035	30588045	30588044	-	High_confidence	6	8	15	0.733285	3.324863	chr22	30587924	30588011	SINE|MIR|MIRb	-	chr22	30584226	30588023	PES1|ENST00000477762.5	-	30584226,30584545,30587285,30588020	30584454,30584717,30587395,30588023	0.866667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	42866924	42867138	42866924	-	RAMPAGE_only	81	112	578	28.255915	6.170045	chr13	42866854	42867156	SINE|Alu|AluJr	-	chr13	42836602	42872802	MSTRG.13907.2	-	42836602,42842798,42870600	42842551,42868464,42872802	0.998270
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	11609299	11609306	11609299	+	High_confidence	19	22	33	1.613227	4.116729	chr12	11608971	11609502	LTR|ERV1|MER34C2	+	chr12	11609316	11610186	MSTRG.10774.1	+	11609316	11610186	0.515152
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	11555254	11555255	11555254	-	High_confidence	12	12	12	0.586628	3.022055	chr19	11554976	11555277	SINE|Alu|AluSg	+	chr19	11553046	11555467	ELOF1|ENST00000587806.5	-	11553046,11554010,11554231,11555173,11555344	11553810,11554081,11554365,11555253,11555467	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	102261189	102261232	102261189	-	High_confidence	7	7	20	0.977713	3.471354	chr8	102261109	102261291	DNA|hAT-Ac|OldhAT1	+	chr8	102253945	102261986	UBR5|ENST00000517465.1	-	102253945,102257631,102258315,102258984,102261145,102261914	102254514,102257717,102258424,102259129,102261259,102261986	0.950000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	147173692	147173713	147173692	-	RAMPAGE_only	3	3	7	0.342200	2.521641	chr1	147173692	147173819	DNA|hAT-Charlie|MER5A1	+	chr1	147155105	147172589	PRKAB2|NM_005399.4	-	147155105,147161711,147162439,147166497,147166845,147167766,147171988,147172428	147159642,147161780,147162573,147166618,147166939,147167933,147172167,147172589	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	50895447	50895461	50895447	+	RAMPAGE_only	2	2	7	0.342200	2.521641	chr14	50893612	50896276	LTR|ERV1|HERVH-int	+	chr14	50893581	50904571	ABHD12B|ENST00000554566.5	+	50893581,50895563,50901828,50903388,50904073,50904338	50893758,50895722,50901911,50903467,50904192,50904571	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	4143199	4143241	4143199	+	High_confidence	29	29	73	3.568654	4.731845	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.958904
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	112825728	112825765	112825764	-	RAMPAGE_only	571	580	1060	51.818806	6.090569	chr1	112825660	112826054	LTR|ERV1|LTR7	-	chr1	112820289	112849777	LINC01356|ENST00000449572.2	-	112820289,112823652,112825512,112840487,112849679	112820538,112823754,112825672,112840580,112849777	0.839623
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	74085927	74085931	74085927	+	High_confidence	261	357	522	25.518318	5.947092	chr9	74085582	74086032	LTR|ERV1|LTR7	+	chr9	74085897	74112116	MSTRG.54026.1	+	74085897,74109707	74086180,74112116	0.586207
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	4669251	4669252	4669251	+	High_confidence	7	7	7	0.342200	2.807355	chr16	4669151	4669448	SINE|Alu|AluSz	+	chr16	4669120	4681580	MGRN1|ENST00000591673.1	+	4669120,4671390,4673497,4677462,4680031,4681549	4669252,4671459,4673657,4677572,4680097,4681580	0.714286
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	52039567	52039600	52039585	+	RAMPAGE_only	8	8	24	1.173256	3.688722	chr10	52039561	52039755	DNA|hAT|MamRep38	-	chr10	52036807	52298350	MSTRG.5939.10	+	52036807,52054483,52062536,52133839,52161888,52251569,52271349,52272391,52280788,52282152,52288725,52288930,52290223,52293801	52037112,52054561,52062631,52133905,52161963,52251666,52271489,52272481,52280930,52282316,52288848,52288993,52290290,52298350	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	187999656	187999665	187999656	+	RAMPAGE_only	6	6	15	0.733285	3.182006	chr4	187999613	187999838	LINE|L2|L2b	-	chr4	188002707	188005045	ZFP42|ENST00000618147.1	+	188002707	188005045	0.933333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	67818379	67818400	67818379	-	High_confidence	4	4	12	0.586628	3.418296	chr5	67817944	67823959	LINE|L1|L1PA3	+	chr5	67699450	67818322	AC106798.1|ENST00000506819.1	-	67699450,67701490,67817939,67818279	67699725,67701652,67818048,67818322	0.583333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	54634471	54634551	54634529	-	RAMPAGE_only	85	117	413	20.189780	5.719348	chr3	54634483	54634934	LTR|ERV1|LTR7	-	chr3	54632121	54639857	MSTRG.35417.8	-	54632121,54637690,54639604	54634565,54637820,54639857	0.985472
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	90048094	90048110	90048109	+	RAMPAGE_only	9	9	29	1.417684	4.060262	chr16	90048136	90048269	SINE|MIR|MIRb	+	chr16	90093153	90096354	TUBB8P7|ENST00000564451.1	+	90093153,90094341,90095133	90093853,90094535,90096354	0.620690
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	179118609	179118619	179118618	-	RAMPAGE_only	5	6	14	0.684399	2.950212	chr1	179118593	179118709	LINE|RTE-BovB|MamRTE1	-	chr1	179107717	179143044	ABL2|ENST00000504405.5	-	179107717,179109207,179110281,179112308,179114877,179117331,179118586,179120189,179121594,179126376,179131310,179142932	179108898,179109441,179110455,179112398,179115030,179117516,179118764,179120274,179121867,179126672,179131481,179143044	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	144106344	144106345	144106344	+	High_confidence	17	17	23	1.124370	3.356492	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.869565
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	24995131	24995134	24995133	+	RAMPAGE_only	14	37	50	2.444283	4.614311	chr15	24995035	24995326	SINE|Alu|AluSx4	+	chr15	24981993	25002404	MSTRG.17009.23	+	24981993,24998969,25000244,25001357	24998486,24999078,25000374,25002404	0.980000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	67333951	67334081	67334080	+	RAMPAGE_only	13	16	153	7.479507	5.877966	chr2	67331916	67335853	LTR|ERV1|HERVH-int	+	chr2	67331761	67343461	MSTRG.28003.5	+	67331761,67333952,67337008	67332062,67334150,67343461	0.915033
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	42862330	42862332	42862330	-	RAMPAGE_only	3	7	8	0.391085	2.807355	chr13	42862167	42862297	LINE|L2|L2a	-	chr13	42850246	42872744	LINC00428|NR_126388.1	-	42850246,42862087,42872557	42850692,42862165,42872744	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	63847676	63847682	63847681	+	RAMPAGE_only	6	6	11	0.537742	3.121928	chr2	63847466	63847912	LTR|ERV1|LTR7	-	chr2	63846073	63885684	UGP2|ENST00000491621.5	+	63846073,63856305,63857828,63882465,63883959,63885588	63846174,63856433,63857936,63882651,63884093,63885684	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	58943651	58943664	58943651	+	High_confidence	3	5	8	0.391085	2.750000	chr11	58943541	58944242	LTR|ERV1|MER57-int	+	chr11	58943370	58955334	GLYATL1|ENST00000524881.5	+	58943370,58943542,58947045,58947857,58954769,58955175	58943460,58943666,58947165,58947965,58954896,58955334	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	34860373	34860407	34860406	-	High_confidence	5	6	16	0.782171	2.872906	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.812500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	54634860	54634878	54634877	-	RAMPAGE_only	16	16	34	1.662113	3.752600	chr3	54634483	54634934	LTR|ERV1|LTR7	-	chr3	54632121	54639857	MSTRG.35417.4	-	54632121,54633558,54634460	54632861,54633740,54639857	0.911765
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	148230990	148231006	148230990	-	High_confidence	6	7	15	0.733285	3.521641	chr5	148230602	148236590	LINE|L1|L1PA3	+	chr5	148230342	148230774	MSTRG.43579.1	-	148230342	148230774	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	6853886	6853950	6853886	+	High_confidence	8	8	59	2.884254	5.139736	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853860	6902192	ALOX12P2|ENST00000574727.5	+	6853860,6854213,6892002,6894317,6894883,6895095,6895342,6896315,6896553,6898528,6898799,6899390,6899592,6899867	6854060,6854435,6892075,6894513,6895006,6895199,6895503,6896459,6896763,6898698,6898929,6899490,6899760,6902192	0.830508
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	112400790	112400833	112400799	+	High_confidence	11	13	84	4.106396	5.130530	chr3	112400426	112400860	LTR|ERV1|LTR7Y	-	chr3	112400860	112401276	MSTRG.36399.1	+	112400860	112401276	0.797619
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	12800932	12800959	12800932	-	High_confidence	2	2	11	0.537742	3.095795	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	174118061	174118085	174118084	-	High_confidence	7	8	19	0.928828	3.642150	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075189	174118683	MSTRG.29778.4	-	174075189,174078967,174081151,174081923,174117937	174075527,174079090,174081248,174082001,174118683	0.736842
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	80115068	80115069	80115068	+	RAMPAGE_only	13	13	13	0.635514	2.873141	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	3083182	3083258	3083255	+	RAMPAGE_only	6	8	54	2.639826	4.446940	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	57072119	57072156	57072155	-	High_confidence	23	24	55	2.688712	5.020189	chr18	57072051	57072502	LTR|ERV1|LTR7	-	chr18	57054557	57072119	LINC-ROR|ENST00000553704.3	-	57054557,57057499,57069809,57071903	57056250,57058000,57070003,57072119	0.854545
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	129439736	129439766	129439763	-	High_confidence	6	6	24	1.173256	3.803509	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129437046	129439937	MBD4|ENST00000505883.1	-	129437046,129437807,129439729	129437308,129437950,129439937	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	8788246	8788253	8788252	+	High_confidence	3054	3160	4470	218.518927	7.183624	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8801137	MSTRG.11076.1	+	8788256,8794304,8801066	8788786,8801037,8801137	0.916555
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	176318659	176318670	176318669	-	RAMPAGE_only	5	5	13	0.635514	2.873141	chr3	176318448	176318737	LTR|ERVL-MaLR|MLT1B	-	chr3	176298216	176327356	MSTRG.37639.2	-	176298216,176324812,176326764	176322018,176325000,176327356	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	89681469	89681505	89681504	+	High_confidence	135	170	286	13.981300	6.464634	chr4	89681260	89681677	LTR|ERV1|MER61C	+	chr4	89681511	89720155	MSTRG.39462.6	+	89681511,89691284,89719825	89687002,89691405,89720155	0.902098
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	44234179	44234201	44234200	+	RAMPAGE_only	11	11	25	1.222142	3.684561	chr11	44234250	44234382	SINE|MIR|MIR3	+	chr11	44227716	44245425	MSTRG.8417.12	+	44227716,44232352,44234114,44236292,44244148	44227760,44232496,44234243,44236375,44245425	0.960000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	187180845	187180901	187180879	-	High_confidence	191	257	1214	59.347198	7.990634	chr3	187180812	187181262	LTR|ERV1|LTR7	-	chr3	187140797	187180908	MSTRG.37993.4	-	187140797,187142295,187173615,187180664	187141171,187143108,187175144,187180908	0.503295
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	42865718	42865917	42865802	-	RAMPAGE_only	63	121	440	21.509693	5.892043	chr13	42865740	42865882	DNA|hAT-Blackjack|BLACKJACK	+	chr13	42836602	42872802	MSTRG.13907.2	-	42836602,42842798,42870600	42842551,42868464,42872802	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	179325079	179325080	179325079	+	High_confidence	14	14	16	0.782171	3.373557	chr3	179325011	179325319	SINE|Alu|AluSp	-	chr3	179325152	179333829	ZNF639|ENST00000466264.5	+	179325152,179327560,179328282,179329617,179332988,179333268	179325322,179327631,179328351,179329728,179333123,179333829	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	14245647	14245648	14245647	+	RAMPAGE_only	7	7	10	0.488857	2.721928	chr16	14245645	14245696	SINE|tRNA|LFSINE_Vert	+	chr16	14079287	14266772	MRTFB|ENST00000318282.9	+	14079287,14140543,14210242,14212353,14213544,14217125,14218819,14234145,14240236,14245527,14246472,14248925,14251861,14252364,14258100,14260908	14079354,14140760,14210308,14212409,14213620,14217287,14218998,14234283,14240484,14245660,14247357,14249081,14252023,14252502,14258161,14266772	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	167231871	167231922	167231871	+	RAMPAGE_only	21	23	59	2.884254	4.956725	chr6	167231799	167232114	SINE|Alu|AluSq2	-	chr6	167228306	167253036	MSTRG.47364.2	+	167228306,167231859,167232478,167237240	167228397,167231957,167232560,167253036	0.677966
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	70257706	70257720	70257706	+	High_confidence	4	4	9	0.439971	2.750000	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	55636696	55636761	55636741	-	High_confidence	80	82	400	19.554266	6.271452	chr4	55636701	55636774	LINE|L2|L2a	+	chr4	55595228	55636698	NMU|NR_120489.1	-	55595228,55599141,55600521,55605274,55607436,55609119,55616337,55630401,55636543	55595411,55599181,55600575,55605349,55607466,55609179,55616385,55630460,55636698	0.867500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	39320308	39320340	39320339	-	High_confidence	6	7	33	1.613227	4.271371	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	7905967	7905979	7905978	-	High_confidence	3	3	11	0.537742	3.095795	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.636364
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	53464815	53464816	53464815	+	RAMPAGE_only	65	65	94	4.595253	5.041446	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.914894
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	109332249	109332286	109332276	-	High_confidence	3	3	16	0.782171	3.056565	chr3	109332104	109332400	SINE|Alu|AluSx3	-	chr3	109329017	109332190	DPPA4|ENST00000487299.5	-	109329017,109330523,109331733,109331870	109329088,109330812,109331784,109332190	0.937500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	31121301	31121338	31121301	-	RAMPAGE_only	72	74	145	7.088422	5.217973	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.937931
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	54633583	54633720	54633653	-	RAMPAGE_only	61	62	564	27.571516	6.201634	chr3	54633393	54633720	LTR|ERV1|MER61A	-	chr3	54632121	54639857	MSTRG.35417.6	-	54632121,54634460,54637673,54639604	54633740,54634565,54637820,54639857	0.994681
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	112803778	112803786	112803785	+	RAMPAGE_only	3	3	8	0.391085	3.000000	chr9	112798107	112804159	LINE|L1|L1HS	-	chr9	112750853	112874987	SNX30|NM_001012994.1	+	112750853,112804775,112817704,112830724,112836213,112838497,112850858,112864246,112868783	112751157,112804967,112817815,112830883,112836409,112838697,112850945,112864399,112874987	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	7878197	7878230	7878197	+	High_confidence	4	4	15	0.733285	3.373557	chr2	7875014	7878438	LTR|ERV1|HERVH-int	-	chr2	7878002	7893848	MSTRG.26957.1	+	7878002,7883431,7891272	7878481,7883559,7893848	0.933333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	13806480	13806514	13806480	-	High_confidence	2	2	13	0.635514	2.807390	chr7	13806269	13812292	LINE|L1|L1PA2	+	chr7	13795859	13806692	MSTRG.47780.1	-	13795859	13806692	0.769231
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	20331789	20331790	20331789	-	RAMPAGE_only	5	8	8	0.391085	2.750000	chr2	20331715	20331792	DNA|TcMar-Tigger|Tigger15a	-	chr2	20248691	20327386	PUM2|NM_001282791.1	-	20248691,20253821,20254862,20255215,20256032,20258242,20260336,20263192,20282946,20283342,20290651,20294375,20297552,20307977,20308313,20311493,20312235,20318536,20326260,20327309	20251716,20254014,20254984,20255341,20256170,20258371,20260466,20263460,20283231,20283486,20290790,20294518,20297678,20308071,20308584,20311663,20312423,20318645,20326385,20327386	0.625000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	30097070	30097084	30097070	+	High_confidence	8	8	23	1.124370	3.410099	chr16	30096875	30097207	LTR|ERV1|LTR10B2	+	chr16	30096429	30104116	AC012645.1|ENST00000515455.2	+	30096429,30103456	30097419,30104116	0.956522
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	102207189	102207439	102207285	-	RAMPAGE_only	34	37	187	9.141620	5.410092	chr8	102207046	102207317	DNA|hAT-Charlie|MER103C	+	chr8	102205624	102238775	RRM2B|ENST00000621845.1	-	102205624,102206387,102207325,102212775,102214053,102218813,102224045,102224884,102225917,102232148,102238558	102206277,102207185,102208285,102212889,102214158,102218947,102224140,102225018,102226034,102232304,102238775	0.989305
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	30690388	30690450	30690449	+	RAMPAGE_only	5	7	38	1.857655	4.184602	chr14	30684809	30690837	LINE|L1|L1HS	-	chr14	30676125	30705885	SCFD1|ENST00000554486.1	+	30676125,30694772,30700187,30702295,30705822	30676633,30694869,30700258,30702375,30705885	0.842105
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	59806979	59807021	59806979	-	RAMPAGE_only	3	3	19	0.928828	3.576618	chr10	59806852	59806982	LINE|Penelope|Penelope1_Vert	+	chr10	59791751	59805576	CCDC6|ENST00000491922.1	-	59791751,59794472,59804419	59793111,59794597,59805576	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	40280810	40280811	40280810	-	High_confidence	16	16	19	0.928828	2.800045	chr19	40280545	40281038	LINE|L2|L2a	+	chr19	40242039	40280832	AKT2|ENST00000486368.6	-	40242039,40242533,40255157,40256925,40265221,40280781	40242069,40242687,40255269,40257054,40265351,40280832	0.947368
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	62876803	62876840	62876803	+	RAMPAGE_only	4	4	14	0.684399	3.807355	chr11	62876588	62876898	SINE|Alu|AluSq2	-	chr11	62880421	62881428	SLC3A2|ENST00000544377.1	+	62880421,62881018	62880600,62881428	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	149284778	149284779	149284778	+	High_confidence	12	12	12	0.586628	2.617492	chr3	149283837	149285090	LTR|ERV1|LTR12C	+	chr3	149284781	149333653	AC093001.1|ENST00000489011.1	+	149284781,149333503	149285182,149333653	0.583333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	94608732	94608743	94608733	+	RAMPAGE_only	26	45	94	4.595253	4.109112	chr10	94608636	94608935	SINE|Alu|AluJr	-	chr10	94596879	94613905	MSTRG.6740.17	+	94596879,94601527,94609267	94597111,94609008,94613905	0.936170
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	99410145	99410163	99410146	+	High_confidence	9	12	30	1.466570	4.123231	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.900000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	122064308	122064376	122064308	+	RAMPAGE_only	18	18	60	2.933140	5.289898	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.683333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	112420985	112421018	112420985	-	RAMPAGE_only	41	46	101	4.937452	4.792098	chr3	112419874	112422911	LTR|ERV1|HERVH-int	-	chr3	112418432	112423009	MSTRG.36403.1	-	112418432	112423009	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	102930148	102930183	102930162	+	High_confidence	39	40	153	7.479507	5.554647	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.875817
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	155478043	155478044	155478043	-	RAMPAGE_only	7	9	11	0.537742	2.550341	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	97719161	97719183	97719182	+	RAMPAGE_only	5	5	10	0.488857	2.921928	chr8	97719213	97719522	SINE|Alu|AluSx1	+	chr8	97644545	97725243	MTDH|ENST00000519934.5	+	97644545,97661071,97686667,97687428,97689037,97690951,97706625,97713661,97719048,97722878,97724599	97644887,97661173,97686752,97687605,97689103,97691188,97706750,97713769,97719189,97723035,97725243	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	77736987	77737047	77736987	-	High_confidence	6	8	34	1.662113	4.498940	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.852941
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	283506	283508	283506	+	High_confidence	7	11	15	0.733285	3.456565	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.933333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	49257817	49257823	49257817	-	RAMPAGE_only	47	48	134	6.550679	5.344668	chr1	49257178	49257818	LINE|L1|L1PA3	-	chr1	48817506	50023900	AGBL4|ENST00000371836.1	-	48817506,48867190,49045583,49245769,49697312,49851395,50023762	48818222,48867230,49045800,49245864,49697437,49851518,50023900	0.835821
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	161206422	161206435	161206434	+	RAMPAGE_only	4	5	11	0.537742	2.921928	chr1	161206361	161206444	SINE|tRNA|LFSINE_Vert	+	chr1	161209238	161214239	NDUFS2|ENST00000483804.5	+	161209238,161209482,161209856,161210110,161210303,161210590,161212350,161212591,161213379,161213648,161213863,161214155	161209313,161209595,161209931,161210188,161210389,161210710,161212480,161212654,161213475,161213732,161213921,161214239	0.818182
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	167227085	167227113	167227085	+	RAMPAGE_only	3	4	16	0.782171	3.640224	chr6	167226885	167227366	LTR|ERV1|HUERS-P1-int	+	chr6	167228299	167237511	HPAT5|ENST00000628362.2	+	167228299,167231826,167232478,167237240	167228397,167231957,167232560,167237511	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	7642304	7642319	7642314	+	High_confidence	5	5	17	0.831056	3.852169	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.705882
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	23273132	23273133	23273132	+	RAMPAGE_only	12	12	12	0.586628	3.251629	chr22	23273150	23273375	DNA|hAT-Charlie|MER20	+	chr22	23283208	23291131	BCR|ENST00000487968.5	+	23283208,23285032,23287158,23288096,23289516	23284098,23285201,23287278,23288172,23291131	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	18674357	18674388	18674357	-	High_confidence	2	2	11	0.537742	3.121928	chr5	18674152	18674598	LTR|ERV1|LTR7	-	chr5	18543793	18674250	MSTRG.41183.1	-	18543793,18658426,18664323,18672041	18551165,18658539,18664434,18674250	0.636364
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	62207413	62207604	62207561	+	RAMPAGE_only	34	67	481	23.514005	6.965530	chr1	62207099	62207716	LINE|L1|L1MEd	+	chr1	62194830	62212328	L1TD1|ENST00000498273.1	+	62194830,62196434,62206518,62209782	62194921,62196528,62207636,62212328	0.997921
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	55950763	55950784	55950773	+	RAMPAGE_only	24	32	77	3.764196	3.897978	chr7	55950812	55951036	LINE|L1|L1MC4a	+	chr7	55951818	55956501	MRPS17|ENST00000285298.8	+	55951818,55953178,55954908	55951930,55953318,55956501	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	61769612	61769664	61769644	-	High_confidence	78	79	494	24.149519	6.477481	chr4	61769542	61770025	LTR|ERV1|LTR7	-	chr4	61736112	61769727	MSTRG.39164.1	-	61736112,61752123,61769394	61751028,61752175,61769727	0.714575
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	30863476	30863509	30863491	+	RAMPAGE_only	62	75	535	26.153831	6.503237	chr13	30863143	30863642	LTR|ERVL|MER74A	+	chr13	30881912	30883395	MSTRG.13657.1	+	30881912,30882559,30883093	30882004,30882659,30883395	0.583178
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	21419636	21419652	21419636	-	High_confidence	4	4	9	0.439971	2.503258	chr12	21419215	21425234	LINE|L1|L1PA2	+	chr12	21311626	21419594	SLCO1A2|ENST00000473830.5	-	21311626,21318781,21334587,21417881,21419176	21311758,21318923,21334704,21417945,21419594	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	37297344	37297345	37297344	+	High_confidence	8	9	9	0.439971	2.725481	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	92105503	92105541	92105540	-	High_confidence	2589	2710	3844	187.916500	6.839212	chrX	92105436	92105917	LTR|ERV1|LTR7	-	chrX	92098887	92105580	MSTRG.56850.1	-	92098887,92105292	92104306,92105580	0.816857
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	23536877	23536878	23536877	+	High_confidence	17	17	20	0.977713	3.366091	chr22	23536061	23537026	LTR|ERVK|LTR5_Hs	+	chr22	23536880	23539480	PCAT14|ENST00000629869.1	+	23536880,23538760	23537136,23539480	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	87410872	87410923	87410922	+	High_confidence	23	24	81	3.959739	4.903615	chr9	87410693	87411146	LTR|ERV1|LTR7	+	chr9	87411057	87424567	MSTRG.54249.3	+	87411057,87413369,87417303	87411294,87413471,87424567	0.617284
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	38193259	38193302	38193259	-	RAMPAGE_only	2	2	13	0.635514	3.188722	chr14	38191085	38194338	LTR|ERV1|HERVH-int	+	chr14	38038977	38091158	AL392023.2|ENST00000555342.1	-	38038977,38091117	38039430,38091158	0.538462
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	31959158	31959179	31959160	+	High_confidence	25	32	53	2.590940	4.556518	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31981060	KIAA1551|ENST00000540924.5	+	31959407,31960776,31980877	31959491,31960871,31981060	0.792453
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	3062922	3062978	3062922	-	High_confidence	23	24	96	4.693024	4.893452	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.979167
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	188109602	188109603	188109602	-	High_confidence	28	28	40	1.955427	4.754378	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188091372	188109603	MSTRG.40883.3	-	188091372,188097060,188101055,188104836,188105179,188109242	188091941,188099175,188101250,188104932,188105590,188109603	0.925000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	96737540	96737543	96737540	+	High_confidence	4	5	10	0.488857	3.121928	chr10	96737353	96737687	LTR|ERVL-MaLR|THE1D	+	chr10	96737507	96750899	MSTRG.6801.1	+	96737507,96750433	96737607,96750899	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	200444744	200444746	200444744	+	RAMPAGE_only	4	8	8	0.391085	2.750000	chr1	200444589	200444768	SINE|Alu|FAM	-	chr1	200473919	200478293	AC104461.1|ENST00000427825.1	+	200473919,200477967	200474100,200478293	0.625000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	17568331	17568403	17568333	+	RAMPAGE_only	21	31	49	2.395398	3.600688	chr21	17568125	17568427	SINE|Alu|AluY	-	chr21	17512905	17570111	CXADR|NM_001338.4	+	17512905,17547026,17551748,17558975,17560701,17561337,17565427	17513172,17547193,17551953,17559131,17560824,17561476,17570111	0.979592
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	29186846	29186864	29186863	-	RAMPAGE_only	3	3	6	0.293314	2.584963	chr1	29186775	29186956	SINE|MIR|MIR3	+	chr1	29147737	29182125	SRSF4|NM_005626.4	-	29147737,29150102,29154695,29159373,29160374,29181645	29149226,29150192,29154910,29159486,29160517,29182125	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	93448448	93448472	93448448	-	RAMPAGE_only	2	2	8	0.391085	2.750000	chr9	93448211	93448518	SINE|Alu|AluSz	+	chr9	93447267	93451114	FAM120AOS|ENST00000428152.1	-	93447267,93448368,93450478,93450944	93447697,93448489,93450587,93451114	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	127655728	127655757	127655756	+	RAMPAGE_only	3	3	9	0.439971	3.169925	chr4	127650220	127656245	LINE|L1|L1PA2	-	chr4	127632965	127716479	INTU|ENST00000503952.5	+	127632965,127643520,127656635,127663380,127669035,127674123,127684408,127685441,127687740,127700009,127704227,127705590,127706486,127708570,127710912,127713935,127716324	127633180,127644056,127656721,127663584,127669154,127674213,127684486,127685569,127687867,127700063,127704290,127705812,127706969,127708668,127711102,127714093,127716479	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	110936582	110936585	110936584	+	High_confidence	89	121	144	7.039536	5.810462	chr12	110936431	110936780	LTR|ERVL-MaLR|THE1D	+	chr12	110936601	110937451	LINC01405|ENST00000331096.2	+	110936601,110937184	110936698,110937451	0.631944
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	94698923	94698924	94698923	-	High_confidence	50	52	52	2.542055	4.711272	chrX	94698819	94699270	LTR|ERV1|LTR7	-	chrX	94680013	94698988	MSTRG.56878.4	-	94680013,94683265,94697895	94683153,94697520,94698988	0.961538
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	45823790	45823823	45823822	-	High_confidence	10	12	19	0.928828	2.725481	chr19	45823777	45823871	LINE|RTE-BovB|MamRTE1	-	chr19	45816482	45824012	SYMPK|ENST00000598329.2	-	45816482,45816797,45817958,45821383,45822755,45823371,45823766	45816577,45816974,45818146,45821485,45822846,45823472,45824012	0.947368
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	20227202	20227478	20227253	-	RAMPAGE_only	583	634	1348	65.897878	7.368526	chr19	20227139	20227425	SINE|Alu|AluY	-	chr19	19724733	20238431	MSTRG.25476.1	-	19724733,20226749,20238287	19724754,20228483,20238431	0.679525
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	107441592	107441602	107441600	-	RAMPAGE_only	4	7	14	0.684399	3.238901	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	71417254	71417317	71417254	+	RAMPAGE_only	6	6	42	2.053198	4.147850	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	109250863	109250874	109250863	+	RAMPAGE_only	4	5	11	0.537742	2.913977	chr6	109245218	109251251	LINE|L1|L1PA2	-	chr6	109236613	109270514	LOC100996634|NM_001277339.1	+	109236613,109239327,109242178,109254447,109255370,109257545,109261888,109264800,109267807,109270038	109236780,109239520,109242306,109254648,109255492,109257774,109262091,109264956,109267901,109270514	0.636364
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	66926449	66926451	66926450	-	High_confidence	8	12	16	0.782171	3.189898	chr8	66926412	66926708	SINE|Alu|AluY	-	chr8	66922017	66926398	SNHG6|ENST00000520619.1	-	66922017,66922323,66922613,66926197	66922114,66922392,66922725,66926398	0.812500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	45844263	45844264	45844263	-	RAMPAGE_only	10	15	15	0.733285	2.789898	chr20	45844103	45844219	SINE|MIR|MIR3	-	chr20	45841725	45857389	ACOT8|ENST00000461272.5	-	45841725,45843526,45844262,45848449,45855158,45857187	45841956,45843772,45844420,45848675,45855292,45857389	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	73327012	73327023	73327022	+	High_confidence	5	5	11	0.537742	2.913977	chr18	73325047	73328058	LTR|ERV1|HERVH-int	+	chr18	73326740	73349363	LINC02582|ENST00000583942.1	+	73326740,73332462,73349083	73327188,73332581,73349363	0.727273
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	1241434	1241489	1241488	-	RAMPAGE_only	7	7	20	0.977713	3.684184	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1248740	CTBP1|ENST00000513420.1	-	1225437,1228198,1238182,1241324,1248660	1225566,1228343,1238337,1241519,1248740	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	90637875	90637918	90637903	+	RAMPAGE_only	6	6	27	1.319913	3.648432	chr5	90637833	90637939	LINE|CR1|X6A_LINE	-	chr5	90640717	90708909	ADGRV1|ENST00000640403.1	+	90640717,90642635,90642855,90643802,90644705,90645967,90647497,90651603,90652345,90653220,90657904,90672545,90674053,90675242,90676079,90679548,90681314,90683585,90685779,90689860,90690796,90692604,90693889,90696936,90703664,90704388,90705399,90706230,90708815	90640868,90642762,90643041,90643983,90644869,90646091,90647764,90651730,90652563,90653952,90658278,90672722,90674234,90675445,90676209,90679629,90681454,90684195,90685995,90690076,90691041,90692786,90694701,90697146,90703795,90704488,90705579,90706394,90708909	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	103742908	103742936	103742935	+	High_confidence	5	5	12	0.586628	2.913977	chrX	103742658	103742960	SINE|Alu|AluJb	-	chrX	103742591	103786575	MSTRG.57038.5	+	103742591,103746874,103774216,103776852,103785581,103786464	103743107,103746922,103774362,103776999,103785768,103786575	0.916667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	64439280	64439308	64439294	+	RAMPAGE_only	32	32	61	2.982026	4.007473	chr12	64439324	64439679	DNA|hAT-Charlie|Charlie4a	+	chr12	64404372	64448684	XPOT|NM_007235.4	+	64404372,64409961,64414906,64416697,64418045,64418875,64420069,64420352,64421234,64423004,64423181,64424598,64425037,64425337,64425814,64428050,64430048,64431537,64433413,64434506,64434793,64435626,64439243,64445074,64448104	64404804,64410095,64414989,64416754,64418115,64419094,64420254,64420521,64421471,64423043,64423244,64424723,64425182,64425457,64425909,64428120,64430287,64431823,64433603,64434623,64434909,64435674,64439315,64445131,64448684	0.950820
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	64242523	64242549	64242548	+	High_confidence	16	18	46	2.248741	4.778678	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	41194682	41194691	41194683	+	RAMPAGE_only	8	14	23	1.124370	4.106603	chr19	41194732	41194834	SINE|MIR|MIR	+	chr19	41193206	41207539	CYP2S1|NM_030622.7	+	41193206,41194543,41197778,41198461,41198708,41201230,41203449,41205957,41206279	41193441,41194709,41197928,41198622,41198888,41201372,41203637,41206099,41207539	0.869565
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	26956544	26956570	26956544	-	High_confidence	4	4	18	0.879942	2.609850	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	97212047	97212049	97212048	-	RAMPAGE_only	3	5	7	0.342200	2.521641	chr9	97211902	97212194	SINE|Alu|AluJr	-	chr9	97200474	97214331	MSTRG.54558.2	-	97200474	97214331	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	92103590	92103619	92103608	-	RAMPAGE_only	11	14	34	1.662113	4.195909	chrX	92102573	92105434	LTR|ERV1|HERVH-int	-	chrX	92098887	92105580	MSTRG.56850.1	-	92098887,92105292	92104306,92105580	0.970588
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	188033809	188033847	188033845	+	High_confidence	148	214	714	34.904365	6.872593	chr2	188033497	188033914	LTR|ERV1|LTR7	+	chr2	188033799	188040599	MSTRG.30176.3	+	188033799,188035422,188039129	188034060,188035756,188040599	0.878151
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	160199150	160199156	160199150	+	High_confidence	38	39	56	2.737597	3.887261	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.946429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	12754342	12754343	12754342	+	High_confidence	4	4	6	0.293314	2.584963	chr20	12754276	12757279	LTR|ERV1|HERVH-int	+	chr20	12754178	12765768	MSTRG.31518.3	+	12754178,12760245	12754422,12765768	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	62937041	62937042	62937041	-	High_confidence	6	6	6	0.293314	2.584963	chr20	62936956	62937065	DNA|hAT-Charlie|Charlie2a	-	chr20	62877742	62937940	MSTRG.32363.2	-	62877742,62890959,62891986,62892808,62893665,62894412,62894809,62895048,62896232,62896530,62905886,62907146,62909698,62910773,62914209,62926639	62882414,62891155,62892076,62892962,62894194,62894548,62894914,62895165,62896392,62896996,62906100,62907359,62910020,62911614,62914406,62937940	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	27111101	27111102	27111101	-	RAMPAGE_only	51	51	58	2.835369	4.238632	chr2	27110684	27112017	LTR|ERV1|LTR12C	-	chr2	27101112	27119030	CGREF1|ENST00000312734.8	-	27101112,27102096,27102359,27102525,27104286,27110672,27118845	27101888,27102221,27102430,27102591,27104377,27110968,27119030	0.965517
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	43013306	43013393	43013392	-	High_confidence	19	19	92	4.497481	5.496069	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	97781287	97781315	97781310	-	RAMPAGE_only	15	15	45	2.199855	4.755296	chr6	97779949	97782999	LTR|ERV1|HERVH-int	+	chr6	97772197	97782535	MSTRG.46109.1	-	97772197,97781981	97775729,97782535	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	162036506	162036507	162036506	+	High_confidence	8	9	12	0.586628	3.188722	chr5	162030925	162036952	LINE|L1|L1PA2	-	chr5	162036770	162097662	GABRG2|ENST00000640757.1	+	162036770,162093827,162095494,162097637	162036954,162093979,162095562,162097662	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	173865031	173865033	173865031	-	High_confidence	4	7	10	0.488857	2.725481	chr1	173864936	173865210	SINE|Alu|AluSz	+	chr1	173863903	173864906	GAS5|ENST00000422207.5	-	173863903,173864256,173864483	173864075,173864304,173864906	0.900000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	71677205	71677269	71677268	+	RAMPAGE_only	7	8	39	1.906541	4.387465	chr8	71675389	71678457	LTR|ERV1|HERVH-int	+	chr8	71675376	71721771	MSTRG.51565.2	+	71675376	71721771	0.769231
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	81427140	81427150	81427149	-	High_confidence	5	9	16	0.782171	3.280639	chr14	81426946	81427161	SINE|MIR|MIR	-	chr14	81260649	81427212	STON2|NM_033104.3	-	81260649,81276900,81370987,81395893,81398294,81427101	81270872,81278739,81371185,81396178,81398580,81427212	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	113274626	113274627	113274626	-	High_confidence	7	8	8	0.391085	2.521641	chr9	113274596	113274823	SINE|MIR|MIR	+	chr9	113267007	113275589	CDC26|ENST00000374206.3	-	113267007,113272426,113273328,113275381	113267439,113272548,113273438,113275589	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	31515491	31515514	31515513	-	RAMPAGE_only	12	12	27	1.319913	3.559900	chr5	31515356	31515548	DNA|hAT-Charlie|MER5A	-	chr5	31493208	31526420	DROSHA|ENST00000512076.1	-	31493208,31495285,31504554,31508620,31511034,31514987,31526078	31493293,31495372,31504635,31508775,31511176,31515219,31526420	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	3380960	3380961	3380960	+	High_confidence	271	284	311	15.203442	6.261604	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.607717
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	47369124	47369181	47369124	-	High_confidence	1133	1257	3081	150.616737	6.562514	chr20	47368952	47369324	LINE|L2|L2c	+	chr20	47210440	47369190	MSTRG.32148.16	-	47210440,47220257,47221313,47224316,47227202,47229725,47236325,47238895,47246007,47249286,47262287,47276313,47282101,47283570,47287228,47290186,47291795,47294665,47298728,47310055,47347855,47369041	47210897,47220324,47221474,47224556,47227281,47229806,47236516,47239138,47246517,47249439,47262428,47276795,47282217,47283648,47287284,47290274,47291888,47294779,47298947,47310204,47347926,47369190	0.964297
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	35040966	35040967	35040966	-	RAMPAGE_only	5	5	7	0.342200	2.521641	chr9	35040834	35041419	LTR|ERV1|LTR10C	-	chr9	35038624	35044326	AL353795.3|ENST00000624351.1	-	35038624	35044326	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	113773650	113773651	113773650	-	High_confidence	30	32	39	1.906541	4.378992	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113745703	113773663	LINC01234|ENST00000550223.5	-	113745703,113767074,113773614	113746595,113767208,113773663	0.897436
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	4606172	4606192	4606172	-	RAMPAGE_only	8	8	22	1.075485	3.821928	chr9	4605799	4611811	LINE|L1|L1PA3	+	chr9	4600610	4666449	SPATA6L|ENST00000406861.6	-	4600610,4604178,4605346,4617922,4618863,4622407,4625326,4626425,4627752,4629090,4635274,4646486,4656040,4661898,4666211	4600809,4604269,4605440,4618110,4618898,4622510,4625566,4626555,4627856,4629168,4635399,4646528,4656089,4662036,4666449	0.545455
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147872206	147872290	147872289	+	High_confidence	150	157	1026	50.156693	5.941161	chr5	147871298	147874075	LTR|ERV1|HERVH-int	-	chr5	147872017	147882191	SCGB3A2|ENST00000514688.1	+	147872017,147881445,147882026	147872321,147881648,147882191	0.970760
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	117281647	117281648	117281647	-	RAMPAGE_only	14	14	14	0.684399	3.182006	chr10	117281573	117281813	SINE|MIR|MIRc	-	chr10	117277273	117375467	PDZD8|ENST00000334464.6	-	117277273,117290185,117318871,117340979,117374355	117285471,117290348,117318974,117341102,117375467	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	26298336	26298337	26298336	+	RAMPAGE_only	12	12	14	0.684399	2.931209	chr2	26297920	26298397	LTR|ERV1|LTR15	+	chr2	26303784	26304408	MSTRG.27227.1	+	26303784	26304408	0.785714
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	101302779	101302805	101302804	+	RAMPAGE_only	2156	2230	5273	257.774116	7.127471	chr7	101302808	101303192	LINE|L1|L1M2	+	chr7	101299605	101304969	MSTRG.49357.3	+	101299605,101300768,101302798,101304009	101299866,101301049,101303028,101304969	0.985587
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	27673224	27673266	27673239	-	High_confidence	35	35	109	5.328538	5.903628	chr14	27673059	27679095	LINE|L1|L1PA3	+	chr14	27321921	27673221	AL390334.1|ENST00000556890.1	-	27321921,27656337,27673028	27322141,27656502,27673221	0.651376
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	2242922	2242923	2242922	+	High_confidence	164	164	170	8.310563	4.881108	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.947059
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	51382047	51382086	51382047	-	RAMPAGE_only	22	22	34	1.662113	4.432620	chr13	51381694	51382000	SINE|Alu|AluSq4	-	chr13	51365502	51384691	INTS6|ENST00000483441.5	-	51365502,51367804,51368938,51374207,51374653,51376047,51378238,51379461,51382028,51383328,51383588	51365845,51367898,51369310,51374439,51374796,51376174,51378454,51379572,51382123,51383461,51384691	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	47067497	47067513	47067498	-	High_confidence	49	61	161	7.870592	5.078423	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.968944
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	27629170	27629188	27629173	-	RAMPAGE_only	104	111	204	9.972676	5.708971	chr11	27629071	27629519	LTR|ERV1|LTR7	-	chr11	27611621	27634522	MSTRG.8204.2	-	27611621,27623949,27634330	27618182,27624145,27634522	0.980392
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	54637732	54637935	54637934	-	RAMPAGE_only	121	137	780	38.130819	6.855030	chr3	54636818	54639750	LTR|ERV1|HERVH-int	-	chr3	54632121	54639857	MSTRG.35417.4	-	54632121,54633558,54634460	54632861,54633740,54639857	0.980769
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	79631273	79631363	79631302	+	High_confidence	37	37	342	16.718898	5.842061	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.985380
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	150457343	150457344	150457343	+	RAMPAGE_only	22	23	26	1.271027	2.567210	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150408444	150473556	MSTRG.3024.5	+	150408444,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150409052,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	0.961538
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	27472105	27472107	27472106	+	High_confidence	4	6	8	0.391085	2.521641	chr5	27472073	27472487	LTR|ERV1|MER61C	+	chr5	27472291	27494318	MSTRG.41258.1	+	27472291,27475534	27472519,27494318	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	52914056	52914057	52914056	-	RAMPAGE_only	4	4	7	0.342200	2.807355	chr1	52913984	52914299	LINE|L2|L2b	-	chr1	52913419	52921785	ECHDC2|ENST00000542552.1	-	52913419,52917543,52921552	52914095,52917615,52921785	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	47106656	47106695	47106675	-	RAMPAGE_only	4	4	22	1.075485	3.663533	chr14	47104679	47107602	LTR|ERV1|HERVH-int	+	chr14	47035188	47131838	MDGA2|ENST00000554762.5	-	47035188,47061248,47096853,47131713	47035304,47061578,47097039,47131838	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	39013317	39013353	39013317	+	High_confidence	8	8	18	0.879942	3.175123	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	166725275	166725277	166725276	+	RAMPAGE_only	4	7	11	0.537742	3.095795	chr4	166725217	166726000	LINE|L1|L1PA10	-	chr4	166716287	166749087	MSTRG.40532.1	+	166716287,166725235,166727034	166716723,166725319,166749087	0.636364
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	38427359	38427390	38427359	+	RAMPAGE_only	2	2	9	0.439971	2.725481	chr1	38425526	38428474	LTR|ERV1|HERVH-int	+	chr1	38425429	38427829	MSTRG.1097.1	+	38425429,38427535	38425672,38427829	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	10729289	10729338	10729337	-	RAMPAGE_only	15	23	82	4.008625	5.456646	chr11	10729274	10729483	LTR|ERVL|LTR67B	-	chr11	10573090	10693988	MRVI1|NM_130385.3	-	10573090,10580454,10581866,10591547,10593491,10594145,10600917,10603119,10604404,10606741,10609727,10623777,10625965,10627715,10627972,10628750,10629537,10631990,10633967,10652024,10693535	10576575,10580589,10581986,10591612,10593599,10594195,10601059,10603251,10604545,10606772,10609851,10623856,10626583,10627760,10628025,10628828,10629711,10632061,10634071,10652182,10693988	0.731707
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	114425818	114425819	114425818	-	RAMPAGE_only	23	24	32	1.564341	3.962103	chr6	114424805	114427844	LTR|ERV1|HERVH-int	-	chr6	114400531	114427981	MSTRG.46510.3	-	114400531,114406897,114427698	114402272,114426381,114427981	0.968750
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	7457400	7457417	7457406	+	RAMPAGE_only	3	4	9	0.439971	2.500000	chr5	7457234	7457643	LTR|ERVL-MaLR|MLT1H	-	chr5	7455941	7482723	MSTRG.41004.2	+	7455941,7479682	7479110,7482723	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	72627651	72627762	72627719	-	RAMPAGE_only	9	9	53	2.590940	5.132944	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.509434
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	201970903	201970949	201970933	+	High_confidence	13	13	51	2.493169	5.000569	chr2	201970776	201971156	LTR|ERVL-MaLR|MLT1A0	+	chr2	201970945	201981499	MSTRG.30446.1	+	201970945,201980418	201971078,201981499	0.588235
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	87922149	87922150	87922149	+	High_confidence	769	812	1067	52.161006	6.953771	chr4	87921802	87922252	LTR|ERV1|LTR7	+	chr4	87922148	87925855	MSTRG.39418.3	+	87922148,87923543	87922400,87925855	0.549203
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	176162919	176162969	176162936	-	RAMPAGE_only	8	15	35	1.710998	4.593429	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944852	176184664	MSTRG.3704.6	-	175944852,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176136487,176149005,176162868,176163826,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176136547,176149074,176162988,176163891,176176007,176184664	0.971429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	22699927	22699938	22699937	+	RAMPAGE_only	52	52	79	3.861968	5.322442	chr12	22699796	22700056	LTR|ERVL-MaLR|MLT1A	+	chr12	22859474	22971008	AC084816.1|ENST00000538317.5	+	22859474,22861068,22887963,22969362,22970835	22859545,22861224,22888044,22969465,22971008	0.531646
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	14710323	14710349	14710323	-	High_confidence	6	6	18	0.879942	3.683542	chr12	14710158	14710640	LTR|ERV1|LTR7	-	chr12	14697151	14710628	MSTRG.10904.1	-	14697151	14710628	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	12754000	12754051	12754000	+	High_confidence	5	5	16	0.782171	3.500000	chr20	12753819	12754274	LTR|ERV1|LTR7	+	chr20	12754174	12763001	MSTRG.31518.2	+	12754174,12756137,12760245	12754422,12756425,12763001	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	70312604	70312647	70312604	+	RAMPAGE_only	5	6	23	1.124370	3.568084	chr11	70312502	70312611	DNA|hAT-Charlie|MER5B	-	chr11	70272227	70385312	PPFIA1|ENST00000644155.1	+	70272227,70324401,70324846,70325499,70326261,70326596,70330172,70331959,70333469,70335562,70337364,70338373,70339170,70343668,70348188,70350993,70354300,70355638,70356160,70362094,70362287,70365372,70365940,70372214,70372476,70374917,70376531,70378029,70382087,70383002	70272436,70324503,70325011,70325574,70326363,70326818,70330319,70332094,70333553,70335694,70337427,70338453,70339306,70343892,70348420,70351023,70354452,70355811,70356254,70362176,70362488,70365435,70365967,70372390,70372574,70375093,70376600,70378195,70382158,70385312	0.869565
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	53220846	53220847	53220846	-	RAMPAGE_only	15	18	18	0.879942	2.947703	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	29647530	29647585	29647530	+	High_confidence	2	2	22	1.075485	3.820889	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.772727
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	87411214	87411246	87411221	+	High_confidence	3	4	12	0.586628	3.251629	chr9	87411148	87414340	LTR|ERV1|HERVH-int	+	chr9	87411057	87424567	MSTRG.54249.3	+	87411057,87413369,87417303	87411294,87413471,87424567	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	63594815	63594826	63594825	+	RAMPAGE_only	4	7	14	0.684399	3.392747	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	96877317	96877321	96877320	-	High_confidence	164	170	238	11.634788	5.349479	chr15	96877216	96877667	LTR|ERV1|LTR7	-	chr15	96868266	96877308	MSTRG.18743.2	-	96868266,96875006	96868282,96877308	0.752101
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	120575534	120575535	120575534	-	High_confidence	9	9	9	0.439971	2.641604	chrX	120575157	120575784	LTR|Gypsy|LTR104_Mam	-	chrX	120526640	120575794	CUL4B|ENST00000404115.7	-	120526640,120530101,120532421,120534480,120535829,120536926,120538123,120538659,120539267,120540369,120541601,120542965,120543726,120544113,120544480,120545443,120546546,120547135,120557923,120560082,120574550,120575405	120526856,120530254,120532594,120534586,120535943,120537034,120538209,120538770,120539372,120540562,120541720,120543033,120543809,120544203,120544643,120545517,120546616,120547239,120558039,120560625,120574630,120575794	0.555556
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr22	39021127	39021161	39021155	+	High_confidence	12	13	56	2.737597	4.731200	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.982143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	131312569	131312612	131312569	+	RAMPAGE_only	14	14	45	2.199855	5.078639	chr8	131310566	131313738	LTR|ERV1|HERVH-int	+	chr8	131310471	131317506	AC104257.1|ENST00000519005.1	+	131310471,131312555,131315759,131317333	131310712,131312748,131315883,131317506	0.555556
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	55069530	55069553	55069539	-	High_confidence	7	7	17	0.831056	3.454822	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55044323	55069546	RDH13|NM_138412.3	-	55044323,55047386,55048328,55048658,55056652,55059156,55064295,55069321	55045309,55047488,55048541,55048763,55056808,55059275,55064412,55069546	0.647059
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	15756604	15756702	15756665	-	High_confidence	8	8	65	3.177568	4.608671	chr3	15756542	15756684	SINE|MIR|MIRc	+	chr3	15667235	15756551	ANKRD28|NM_001195099.1	-	15667235,15675897,15676973,15677479,15678208,15679300,15679475,15685225,15686001,15686221,15690018,15694738,15695187,15696133,15707923,15709667,15711210,15712139,15713526,15714577,15720914,15724381,15735409,15737032,15751749,15756483	15670556,15675989,15677056,15677562,15678354,15679384,15679563,15685445,15686119,15686309,15690220,15694813,15695214,15696245,15708064,15709736,15711274,15712222,15713641,15714656,15721127,15724524,15735497,15737233,15751820,15756551	0.815385
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	115184589	115184598	115184597	-	RAMPAGE_only	6	6	10	0.488857	2.641604	chr3	115184183	115185447	LTR|ERV1|LTR12C	-	chr3	114234630	114237578	ZNF80|NM_007136.3	-	114234630	114237578	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	15006394	15006427	15006394	+	RAMPAGE_only	23	25	51	2.493169	3.737753	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.882353
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	33351952	33351978	33351952	+	High_confidence	151	176	570	27.864830	6.860025	chr7	33351872	33352111	LTR|ERV1|LTR27B	-	chr7	33351926	33604952	MSTRG.48163.13	+	33351926,33357854,33367766,33383665,33387991,33505462,33533953,33604864	33352049,33357995,33367862,33383838,33388144,33505645,33534176,33604952	0.840351
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	118020911	118020921	118020920	+	RAMPAGE_only	19	21	31	1.515456	3.369699	chr12	118020805	118020941	LINE|CR1|L3	+	chr12	118024915	118027392	RFC5|ENST00000472603.1	+	118024915,118025746,118026888	118025010,118025828,118027392	0.967742
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	61767526	61767556	61767526	+	RAMPAGE_only	4	4	24	1.173256	3.204987	chr4	61766613	61769540	LTR|ERV1|HERVH-int	-	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.958333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	67231038	67231049	67231038	-	RAMPAGE_only	8	8	13	0.635514	2.584963	chr10	67230665	67236674	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.769231
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	53446231	53446233	53446232	+	RAMPAGE_only	4	6	8	0.391085	3.000000	chr19	53446200	53446369	SINE|Alu|AluSz	-	chr19	53445184	53458260	ZNF761|ENST00000454407.5	+	53445184,53447145,53449511,53454649	53445275,53447283,53449638,53458260	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	39612374	39612416	39612397	-	High_confidence	6	6	18	0.879942	3.410417	chr21	39612310	39612408	SINE|MIR|MIR	+	chr21	39597146	39612821	MSTRG.32817.1	-	39597146,39599340,39601418,39609582,39612296	39597989,39600279,39606576,39609665,39612821	0.944444
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	39420950	39420985	39420984	-	High_confidence	5	5	17	0.831056	3.454822	chr15	39420570	39426588	LINE|L1|L1PA2	+	chr15	39299338	39420951	AC013652.1|ENST00000559318.1	-	39299338,39420543	39299482,39420951	0.588235
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	225786905	225786906	225786905	+	RAMPAGE_only	10	10	14	0.684399	3.180833	chr1	225786845	225787132	SINE|Alu|AluJo	-	chr1	225777836	225790466	SRP9|ENST00000366839.8	+	225777836,225783299,225786861,225789239	225778012,225783368,225786985,225790466	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	43025288	43025319	43025307	+	High_confidence	26	26	82	4.008625	4.542225	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.878049
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	115473527	115473528	115473527	+	High_confidence	152	157	192	9.386048	6.053434	chr9	115473180	115473632	LTR|ERV1|LTR7	+	chr9	115473488	115526559	MSTRG.54872.1	+	115473488,115475710	115473780,115526559	0.718750
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	75376210	75376269	75376223	-	RAMPAGE_only	13	15	90	4.399710	5.190771	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.644444
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	15022124	15022155	15022124	-	High_confidence	4	4	8	0.391085	2.521641	chr6	15021581	15022284	LTR|Gypsy?|LTR85b	-	chr6	14976326	15022110	MSTRG.44479.2	-	14976326,14997415,15008924,15022041	14977318,14997475,15009084,15022110	0.625000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	114281867	114281908	114281867	+	High_confidence	2	2	12	0.586628	3.418296	chr8	114281697	114282146	LTR|ERV1|LTR7	+	chr8	114282066	114295807	AC064802.1|ENST00000521523.5	+	114282066,114284218,114295465	114282294,114284514,114295807	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	177499695	177499729	177499695	+	RAMPAGE_only	6	7	30	1.466570	4.281728	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.766667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	44719456	44719469	44719456	-	High_confidence	5	5	10	0.488857	2.947703	chr19	44719365	44719654	LINE|L2|L2a	+	chr19	44632198	44718631	AC243964.2|ENST00000590796.1	-	44632198,44699083,44715949,44718449	44632619,44699177,44716081,44718631	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	23384922	23384947	23384922	-	High_confidence	3	3	10	0.488857	2.921928	chr21	23384605	23385150	LTR|ERVL|MLT2B3	-	chr21	23361103	23384861	D21S2088E|ENST00000262354.4	-	23361103,23364037,23372326,23372947,23384687	23362239,23364193,23372448,23373084,23384861	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	16577157	16577217	16577216	+	High_confidence	50	50	169	8.261678	6.676598	chrX	16577109	16577452	LTR|ERV1|MER4-int	+	chrX	16577106	16583586	MSTRG.55679.1	+	16577106,16581567	16577285,16583586	0.828402
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	114327239	114327267	114327239	+	RAMPAGE_only	3	3	14	0.684399	3.039149	chr9	114327052	114327433	LTR|ERVL-MaLR|MSTA	+	chr9	114329788	114333256	ORM2|NM_000608.2	+	114329788,114330433,114330791,114331566,114331825,114333068	114330018,114330576,114330862,114331674,114331929,114333256	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	87411041	87411042	87411041	+	High_confidence	1134	1145	1314	64.235765	5.704392	chr9	87410693	87411146	LTR|ERV1|LTR7	+	chr9	87411057	87412130	MSTRG.54249.2	+	87411057,87412076	87412037,87412130	0.857686
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	188109344	188109421	188109378	-	High_confidence	37	37	169	8.261678	6.008285	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188091372	188109603	MSTRG.40883.3	-	188091372,188097060,188101055,188104836,188105179,188109242	188091941,188099175,188101250,188104932,188105590,188109603	0.994083
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	18664424	18664435	18664434	-	RAMPAGE_only	4	5	11	0.537742	3.321928	chr5	18663591	18664669	LINE|L1|L1PA16	+	chr5	18649608	18674250	MSTRG.41183.6	-	18649608,18664323,18672041,18674004	18658539,18664434,18672143,18674250	0.818182
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	18794077	18794086	18794085	+	High_confidence	16	16	40	1.955427	4.411769	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	81616463	81616481	81616465	-	High_confidence	3	4	13	0.635514	3.418296	chr5	81616090	81622140	LINE|L1|L1HS	+	chr5	81442650	81616473	SSBP2|ENST00000509743.6	-	81442650,81446867,81448789,81461054,81466973,81473699,81474495,81489249,81513627,81615472,81616348	81442723,81446922,81448825,81461103,81467041,81473770,81474562,81489309,81513717,81615557,81616473	0.615385
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	131794447	131794452	131794447	-	RAMPAGE_only	5	5	9	0.439971	2.750000	chrX	131794354	131794480	SINE|Alu|FLAM_A	+	chrX	131691529	131795809	FIRRE|ENST00000637577.2	-	131691529,131709497,131711650,131743095,131749305,131755597,131756642,131768548,131783886,131785156,131793993,131794296,131795808	131692636,131709556,131711744,131743248,131749458,131755746,131756709,131768696,131784039,131785258,131794115,131794466,131795809	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	23951347	23951388	23951347	+	High_confidence	11	11	63	3.079797	4.203818	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.825397
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	123587672	123587710	123587709	-	High_confidence	443	473	816	39.890703	6.274316	chr6	123587606	123588007	LTR|ERV1|LTR7	-	chr6	123498188	123587749	MSTRG.46626.5	-	123498188,123503718,123512302,123516140,123530505,123547339,123548453,123570922,123575499,123587458	123498645,123503901,123512362,123516206,123530565,123547372,123548612,123571132,123575695,123587749	0.881127
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	97633855	97633900	97633899	-	High_confidence	3	3	11	0.537742	2.913977	chr4	97633479	97639503	LINE|L1|L1PA3	+	chr4	97385959	97633823	AC034154.1|ENST00000518105.1	-	97385959,97387813,97392641,97572647,97633477	97386057,97387902,97392728,97572718,97633823	0.545455
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	126842983	126842996	126842995	-	RAMPAGE_only	3	3	12	0.586628	2.913977	chr5	126841868	126844447	LTR|ERV1|HERVH-int	-	chr5	126839381	126845354	MSTRG.43006.1	-	126839381,126845106	126842900,126845354	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	134731787	134731831	134731830	+	RAMPAGE_only	4	7	18	0.879942	3.614369	chr11	134731734	134731939	LTR|ERV1|MER39	+	chr11	134735595	134763810	AP001999.1|ENST00000513405.1	+	134735595,134761073	134736542,134763810	0.944444
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	97151240	97151259	97151240	-	RAMPAGE_only	7	7	18	0.879942	3.130718	chr9	97151146	97151498	LTR|ERVL-MaLR|MSTA	-	chr9	97092760	97152694	MSTRG.54542.1	-	97092760,97093895,97095121,97100322,97122357,97139852,97151058	97093398,97094769,97095256,97122265,97136604,97139954,97152694	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	120700781	120700846	120700845	+	RAMPAGE_only	8	8	46	2.248741	4.803575	chr5	120699773	120702958	LTR|ERV1|HERVH-int	-	chr5	120781217	120790778	AC114284.1|ENST00000511422.1	+	120781217,120789953	120781506,120790778	0.978261
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	17012378	17012388	17012378	-	RAMPAGE_only	6	8	17	0.831056	3.500000	chr11	17011267	17012726	LINE|L2|L2a	+	chr11	16787483	17014412	PLEKHA7|ENST00000355661.7	-	16787483,16789774,16790797,16791010,16794487,16794909,16800973,16801667,16802971,16803226,16813112,16816177,16816799,16826119,16841546,16851190,16852282,16854888,16855802,16871098,17013988,17014124,17014315	16789296,16789878,16790915,16791199,16794714,16795018,16801075,16801817,16803052,16803295,16813166,16816264,16817322,16826590,16841722,16851291,16852355,16854993,16855914,16871182,17014046,17014201,17014412	0.647059
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	49539150	49539152	49539150	+	RAMPAGE_only	7	12	13	0.635514	3.238901	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49527617	49543638	RCN3|ENST00000270645.7	+	49527617,49528466,49534192,49537032,49539118,49542552,49543105	49528058,49528714,49534395,49537205,49539179,49542752,49543638	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	12681156	12681160	12681156	-	High_confidence	9	9	17	0.831056	3.337175	chr19	12680833	12681131	SINE|Alu|AluSx3	-	chr19	12679624	12681161	DHPS|ENST00000599481.1	-	12679624,12679800,12680195,12681032	12679719,12679922,12680325,12681161	0.823529
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	81245628	81245700	81245699	+	High_confidence	305	341	1338	65.409021	6.588244	chr1	81245735	81248844	LTR|ERV1|HERVH-int	+	chr1	81245572	81254912	MSTRG.2127.1	+	81245572,81247702,81250807	81245881,81247990,81254912	0.881913
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	114282043	114282111	114282043	+	High_confidence	2077	2178	5838	285.394518	7.561640	chr8	114281697	114282146	LTR|ERV1|LTR7	+	chr8	114282066	114308136	MSTRG.52395.1	+	114282066,114284218,114295465,114304413	114282294,114284514,114302915,114308136	0.914354
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	42925554	42925633	42925632	-	High_confidence	142	152	371	18.136582	6.083692	chr21	42925506	42925876	LTR|ERV1|MER48	-	chr21	42916802	42925646	ERVH48-1|ENST00000447535.1	-	42916802,42925345	42919291,42925646	0.994609
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	49468648	49468670	49468669	+	High_confidence	6	6	26	1.271027	3.193270	chr3	49468531	49468836	SINE|Alu|AluSx1	-	chr3	49468702	49535618	DAG1|NM_001177643.2	+	49468702,49510418,49530796	49469055,49510819,49535618	0.961538
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	18465993	18465994	18465993	+	RAMPAGE_only	6	8	8	0.391085	2.750000	chr3	18465874	18466041	SINE|MIR|MIRc	+	chr3	18445236	18469702	SATB1-AS1|ENST00000598149.5	+	18445236,18463479,18464286,18465962,18468985	18445442,18463545,18464339,18466039,18469702	0.625000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	94234079	94234080	94234079	+	RAMPAGE_only	5	6	7	0.342200	2.807355	chr4	94234038	94234182	SINE|MIR|MIR3	-	chr4	94208083	94289899	SMARCAD1|ENST00000394961.6	+	94208083,94208345,94213034,94226118,94233953,94236951,94240905,94249653,94250751,94252615,94264706,94270727,94273616,94274737,94274889,94276338,94277021,94278421,94278615,94278922,94280591,94281471,94283120,94284959,94289472	94208242,94208584,94213152,94226296,94234122,94237018,94241006,94249755,94250833,94253007,94264906,94270818,94273716,94274797,94274965,94276474,94277159,94278517,94278733,94279050,94280780,94281590,94283303,94285069,94289899	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrY	13888933	13888965	13888933	+	RAMPAGE_only	4	4	11	0.537742	2.594907	chrY	13887678	13889346	LTR|ERV1|LTR12C	+	chrY	13753097	13919338	MSTRG.57957.5	+	13753097,13754639,13790918,13854443,13858516,13859667,13869066,13871632,13887257,13902873,13908171,13909247,13915765	13753159,13754789,13790966,13854577,13858646,13859821,13869128,13871798,13889459,13902968,13908313,13909360,13919338	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	72898905	72898931	72898930	-	High_confidence	8	9	18	0.879942	3.572431	chr1	72898768	72900480	LINE|L1|L1PA2	+	chr1	72748920	72899140	AL583808.1|ENST00000445976.1	-	72748920,72749165,72850749,72898766,72899028	72749028,72749276,72850800,72898883,72899140	0.722222
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	18943726	18943727	18943726	-	RAMPAGE_only	25	27	33	1.613227	3.218139	chrX	18943478	18943684	SINE|MIR|MIRc	-	chrX	18892297	18984362	PHKA2|NM_000292.2	-	18892297,18894203,18895137,18897162,18899172,18900669,18901484,18905757,18906494,18906735,18907017,18907899,18908800,18910871,18918680,18920031,18924055,18924380,18925667,18926452,18929227,18931640,18936054,18938626,18939994,18941528,18943709,18945077,18948743,18951103,18952493,18954253,18983854	18893655,18894404,18895191,18897333,18899226,18900699,18901603,18905859,18906624,18906814,18907097,18908056,18908934,18910960,18918854,18920201,18924134,18924525,18925777,18926587,18929306,18931748,18936150,18938749,18940048,18941675,18943808,18945158,18948826,18951272,18952541,18954412,18984362	0.969697
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	116817872	116817875	116817874	-	High_confidence	246	467	535	26.153831	6.727589	chrX	116817773	116818222	LTR|ERV1|LTR7	-	chrX	116810930	116817860	LOC100126447|NM_001321413.1	-	116810930,116817627	116811349,116817860	0.758879
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	92273185	92273189	92273185	-	RAMPAGE_only	10	11	19	0.928828	3.787144	chrX	92273082	92273516	LTR|ERV1|LTR7Y	-	chrX	92098887	92105580	MSTRG.56850.1	-	92098887,92105292	92104306,92105580	0.526316
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	42446163	42446176	42446163	+	RAMPAGE_only	20	22	37	1.808770	3.712586	chr12	42443565	42446699	LTR|ERVK|HERVK22-int	+	chr12	42442648	42448623	PPHLN1|ENST00000624028.1	+	42442648	42448623	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	112332551	112332573	112332572	+	High_confidence	9	13	36	1.759884	4.107018	chr3	112332311	112332606	SINE|Alu|AluY	+	chr3	112332499	112347830	CD200|ENST00000606471.5	+	112332499,112344961,112347557	112332701,112345288,112347830	0.611111
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	23403726	23403742	23403726	-	RAMPAGE_only	4	4	8	0.391085	2.500000	chr19	23403510	23403964	LTR|ERVK|LTR22A	+	chr19	23399469	23408091	LINC01224|ENST00000596283.5	-	23399469,23402176,23403205,23403719,23404950,23405257,23405999,23407897	23401047,23402512,23403493,23403747,23405108,23405335,23406105,23408091	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	49675885	49675911	49675888	+	High_confidence	5	5	18	0.879942	3.127987	chr19	49675732	49676004	SINE|Alu|AluY	-	chr19	49675896	49688447	PRMT1|ENST00000532489.5	+	49675896,49676345,49680486,49681909,49682195,49683926,49684753,49684921,49686092,49686604,49688161	49676260,49676439,49680588,49682065,49682259,49684069,49684841,49685037,49686243,49686726,49688447	0.611111
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	131777741	131777742	131777741	-	RAMPAGE_only	6	6	7	0.342200	2.584963	chrX	131777466	131777766	SINE|Alu|AluSx	+	chrX	131691995	131785262	FIRRE|ENST00000649391.1	-	131691995,131695466,131695843,131703416,131709497,131711650,131749305,131755597,131756610,131768548,131777622,131783886,131785156	131692636,131695620,131695913,131703518,131709556,131711744,131749458,131755746,131756709,131768696,131777744,131784039,131785262	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	23576944	23576948	23576944	-	High_confidence	18	18	29	1.417684	4.017825	chr18	23576532	23578195	LTR|ERV1|LTR12C	-	chr18	23573451	23576947	NPC1|ENST00000587223.1	-	23573451,23576480	23573574,23576947	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	20423703	20423724	20423703	-	RAMPAGE_only	9	9	17	0.831056	2.536608	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.823529
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	13357722	13357723	13357722	-	High_confidence	13	15	15	0.733285	3.056565	chr16	13357575	13358061	LTR|ERV1|LTR7	-	chr16	13352035	13357671	MSTRG.19415.2	-	13352035	13357671	0.933333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	107580245	107580267	107580264	+	High_confidence	111	111	636	31.091284	6.190758	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.929245
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	21454438	21454457	21454456	-	RAMPAGE_only	8	8	19	0.928828	3.391893	chr19	21454299	21454665	LTR|ERV1|MER4-int	-	chr19	21440645	21463872	MSTRG.25453.1	-	21440645,21453549,21456460,21463743	21449377,21454472,21456588,21463872	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	112664774	112664788	112664777	+	High_confidence	6	8	18	0.879942	3.038562	chr3	112659127	112665164	LINE|L1|L1PA3	-	chr3	112664954	112666732	MSTRG.36418.1	+	112664954	112666732	0.888889
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	103353933	103353940	103353933	+	High_confidence	4	4	8	0.391085	2.521641	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	54634751	54634758	54634757	-	RAMPAGE_only	4	5	12	0.586628	3.418296	chr3	54634483	54634934	LTR|ERV1|LTR7	-	chr3	54632121	54639857	MSTRG.35417.8	-	54632121,54637690,54639604	54634565,54637820,54639857	0.916667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	153871911	153871920	153871911	+	High_confidence	5	5	13	0.635514	2.719295	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	87682024	87682087	87682024	+	High_confidence	316	333	615	30.064685	6.695088	chrX	87681679	87682129	LTR|ERV1|LTR7	+	chrX	87682031	87688218	MSTRG.56782.1	+	87682031	87688218	0.985366
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	209299689	209299814	209299692	+	High_confidence	136	137	738	36.077621	7.044932	chr2	209299312	209299790	LTR|ERV1|LTR7	+	chr2	209299631	209324597	MSTRG.30701.2	+	209299631,209304476,209323399	209299938,209321795,209324597	0.871274
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	39378573	39378587	39378586	+	High_confidence	9	13	25	1.222142	3.863465	chr19	39378626	39378893	SINE|Alu|AluY	+	chr19	39378504	39384895	MSTRG.25942.11	+	39378504,39379965,39380586,39380989,39383207	39378589,39380084,39380785,39381113,39384895	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	57568212	57568213	57568212	-	High_confidence	27	28	36	1.759884	4.536286	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	0.944444
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	86482627	86482672	86482627	+	RAMPAGE_only	3	3	16	0.782171	3.373557	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	127914660	127914675	127914674	-	High_confidence	3	4	8	0.391085	2.521641	chr9	127914519	127914632	SINE|MIR|MIRb	-	chr9	127908317	127914762	ST6GALNAC4|ENST00000495983.1	-	127908317,127909950,127912267,127914655	127908581,127910528,127912680,127914762	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	75979595	75979617	75979604	+	High_confidence	11	11	36	1.759884	4.261725	chr11	75974665	75980018	LINE|L1|L1PA6	-	chr11	75979525	76142651	UVRAG|ENST00000531818.5	+	75979525,75983386,76004004,76007533,76008806,76016814,76065709,76115923,76140710	75980038,75983513,76004089,76007621,76008867,76016980,76065788,76116015,76142651	0.944444
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	75278426	75278443	75278442	-	High_confidence	4	4	9	0.439971	2.500000	chr8	75278367	75284402	LINE|L1|L1PA4	+	chr8	75223403	75278461	CASC9|ENST00000504531.2	-	75223403,75276986,75278356	75224358,75277090,75278461	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	54638040	54638086	54638076	-	RAMPAGE_only	10	15	37	1.808770	3.792972	chr3	54636818	54639750	LTR|ERV1|HERVH-int	-	chr3	54632121	54639857	MSTRG.35417.4	-	54632121,54633558,54634460	54632861,54633740,54639857	0.945946
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	7465468	7465498	7465468	-	RAMPAGE_only	5	5	15	0.733285	3.323231	chr7	7465092	7471120	LINE|L1|L1HS	+	chr7	7417631	7520073	COL28A1|ENST00000444268.1	-	7417631,7419884,7432472,7432631,7436394,7437393,7440789,7443584,7444417,7452318,7453439,7456043,7474600,7477111,7489388,7490577,7506013,7507116,7511090,7511651,7515813,7517795,7520061	7417927,7419953,7432541,7432700,7436463,7437462,7440861,7443653,7444489,7452387,7453508,7456112,7474669,7477180,7489457,7490646,7506067,7507161,7511135,7511844,7515840,7517837,7520073	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	3397095	3397122	3397121	+	RAMPAGE_only	7	7	21	1.026599	3.215841	chr11	3397121	3398090	Retroposon|SVA|SVA_E	+	chr11	3383461	3408961	MSTRG.7631.6	+	3383461,3384166,3384898,3386406,3391256,3391441,3395712,3401758,3402612,3402914,3403592,3404853,3406498,3407621,3408685	3383546,3384284,3386365,3391231,3391392,3393159,3397406,3401867,3402729,3402956,3403652,3404963,3406715,3407697,3408961	0.809524
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	27477620	27477698	27477697	+	RAMPAGE_only	12	15	60	2.933140	4.861406	chr5	27477542	27477973	LTR|ERV1|MER61C	+	chr5	27472291	27494318	MSTRG.41258.1	+	27472291,27475534	27472519,27494318	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	186242256	186242289	186242256	+	High_confidence	9	9	20	0.977713	3.426367	chr4	186241955	186242322	LTR|ERV1|LTR7	-	chr4	186242177	186258471	MSTRG.40839.11	+	186242177,186250242,186251218,186251486,186251748,186252016,186254587,186255991,186257225,186258020	186242506,186250402,186251328,186251649,186251861,186252185,186254763,186256087,186257365,186258471	0.900000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	147937528	147937529	147937528	+	RAMPAGE_only	6	6	9	0.439971	2.503258	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	MSTRG.57711.19	+	147940580,147943130,147944904,147945533,147948682	147940662,147943326,147945051,147945616,147950315	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	99893471	99893490	99893471	-	High_confidence	3	3	11	0.537742	2.521928	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	71364325	71364348	71364325	+	RAMPAGE_only	3	4	16	0.782171	3.500000	chr15	71364184	71364385	SINE|MIR|MIRb	+	chr15	71141448	71783383	THSD4|NM_024817.2	+	71141448,71154862,71215034,71242648,71256612,71411686,71660529,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71771063,71777231	71141556,71154932,71215399,71243096,71256715,71411823,71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71771208,71783383	0.562500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	13446770	13446793	13446792	-	RAMPAGE_only	4	4	15	0.733285	3.664498	chr4	13444849	13446816	LINE|L1|L1P3	-	chr4	13367723	13484331	RAB28|ENST00000508274.5	-	13367723,13376544,13381490,13474317,13479429,13484075	13368650,13376622,13381594,13474406,13479526,13484331	0.733333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	121498494	121498528	121498527	-	RAMPAGE_only	4	4	8	0.391085	2.500000	chr10	121498455	121498527	DNA|hAT-Ac|OldhAT1	+	chr10	121479854	121515179	FGFR2|ENST00000429361.5	-	121479854,121485394,121487353,121487990,121496531,121498494,121500825,121503789,121515116	121480021,121485532,121487424,121488113,121496722,121498605,121500947,121503941,121515179	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	11114321	11114348	11114321	-	High_confidence	7	7	30	1.466570	3.923231	chr1	11114155	11114293	SINE|Alu|AluJr4	-	chr1	11107284	11114629	MTOR|ENST00000473471.5	-	11107284,11108180,11109289,11109648,11112851,11114317	11107500,11108286,11109370,11109729,11112917,11114629	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	9391827	9391828	9391827	-	High_confidence	7	7	8	0.391085	2.807355	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9389914	9391822	THUMPD3-AS1|ENST00000522221.1	-	9389914,9391426	9390497,9391822	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	62194431	62194464	62194431	+	High_confidence	6	7	28	1.368799	4.100069	chr1	62194197	62194528	LINE|L2|L2a	-	chr1	62194801	62212328	L1TD1|NM_001164835.1	+	62194801,62196434,62203446,62206518,62209782	62194921,62196528,62203557,62207636,62212328	0.607143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	50924079	50924080	50924079	+	High_confidence	5	8	8	0.391085	3.000000	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	156254917	156254963	156254962	-	High_confidence	30	38	295	14.421271	6.413802	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156113889	156254941	MSTRG.29499.10	-	156113889,156252035	156150602,156254941	0.501695
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	114606893	114606897	114606896	-	High_confidence	438	453	691	33.779995	6.226799	chrX	114606793	114607242	LTR|ERV1|LTR7	-	chrX	114585023	114606886	MSTRG.57263.1	-	114585023,114604483,114606645	114595598,114604771,114606886	0.892909
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	39809803	39809865	39809858	-	High_confidence	49	68	207	10.119333	5.030614	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803600	39810063	MSTRG.53699.3	-	39803600,39809485,39809730	39803859,39809615,39810063	0.879227
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	67974826	67974834	67974833	-	High_confidence	31	31	55	2.688712	5.281182	chr17	67974292	67975154	LTR|ERVL|MER21B	-	chr17	67973909	67974923	MSTRG.22897.1	-	67973909	67974923	0.836364
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	100381367	100381393	100381392	+	RAMPAGE_only	22	23	34	1.662113	3.667838	chr10	100381305	100381754	LTR|ERV1|HERVH-int	+	chr10	100373614	100388347	MSTRG.6942.6	+	100373614,100381215,100388036	100374012,100381448,100388347	0.764706
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	212857963	212857988	212857963	-	High_confidence	3	4	10	0.488857	2.721928	chr1	212857840	212858012	LTR|ERV1|MER41D	+	chr1	212856603	212858088	FLVCR1-DT|ENST00000426161.5	-	212856603,212857765	212857172,212858088	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	103742787	103742788	103742787	+	High_confidence	10	10	14	0.684399	2.815072	chrX	103742658	103742960	SINE|Alu|AluJb	-	chrX	103742591	103786990	MSTRG.57038.4	+	103742591,103750685,103774216,103776852,103785581,103786464	103743107,103754498,103774362,103776999,103785768,103786990	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	128984180	128984197	128984195	-	RAMPAGE_only	7	8	13	0.635514	3.251629	chr7	128983986	128984151	LINE|L1|L1M5	-	chr7	128957222	129054883	TNPO3|ENST00000471166.1	-	128957222,128967279,128970147,128972425,128974867,128975818,128978982,128979970,128982247,128984167,128986728,128989960,128991998,128993806,128997388,129000428,129001058,129005015,129014978,129016982,129017956,129054650	128957315,128967392,128970315,128972582,128974962,128975935,128979123,128980031,128982324,128984259,128986920,128990202,128992090,128993914,128997535,129000567,129001234,129005159,129015135,129017056,129018157,129054883	0.923077
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	50185902	50185903	50185902	+	RAMPAGE_only	15	22	22	1.075485	3.754442	chr3	50185763	50185908	SINE|MIR|MIR1_Amn	-	chr3	50159018	50189073	SEMA3F|ENST00000434342.5	+	50159018,50159574,50173792,50174051,50174230,50176767,50182283,50182643,50182903,50183185,50183419,50184591,50185442,50185665,50185888,50186280,50186612,50187704	50159288,50159734,50173953,50174114,50174350,50176861,50182403,50182783,50183018,50183255,50183564,50184814,50185531,50185707,50186046,50186348,50186746,50189073	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	69778949	69778986	69778975	+	High_confidence	34	36	123	6.012937	5.207561	chr12	69773410	69779441	LINE|L1|L1HS	-	chr12	69778966	69817117	RAB3IP|ENST00000553099.5	+	69778966,69784719,69794436,69795140,69800208,69801608,69812777,69812963,69815363	69779096,69784815,69794514,69795344,69800337,69801721,69812877,69813033,69817117	0.861789
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	80628702	80628725	80628724	-	RAMPAGE_only	8	8	21	1.026599	3.110578	chr5	80628611	80628790	LINE|L1|L1M5	-	chr5	80628123	80654552	DHFR|ENST00000511032.5	-	80628123,80637882,80649388,80654007,80654403	80629165,80638009,80649494,80654057,80654552	0.809524
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	15552739	15552751	15552750	+	High_confidence	74	78	136	6.648451	5.368370	chr11	15551450	15553107	LINE|L1|L1MC3	-	chr11	15552854	15591098	AC073172.2|ENST00000527770.1	+	15552854,15557217,15561877,15585707,15591077	15552913,15557262,15562228,15585802,15591098	0.941176
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	66246285	66246381	66246285	+	RAMPAGE_only	4	4	40	1.955427	4.506825	chr2	66244338	66247342	LTR|ERV1|HERVH-int	+	chr2	66244206	66281112	MSTRG.27987.3	+	66244206,66246286,66250430,66258904,66271305,66280421	66244484,66246474,66250527,66259022,66278457,66281112	0.600000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	25096941	25096984	25096983	+	RAMPAGE_only	3	3	8	0.391085	3.000000	chr15	25096355	25096994	LINE|L1|L1MDb	-	chr15	25089922	25120432	MSTRG.17009.60	+	25089922,25091589,25093833,25095626,25096827,25097320,25098716,25099144,25103858,25106163,25107471,25107909,25108997,25109197,25109554,25111764,25115298,25117409,25118267,25119064	25090010,25091719,25093974,25095828,25097030,25097439,25098828,25099278,25103970,25106294,25107588,25108038,25109103,25109403,25109715,25111894,25115656,25117515,25118382,25120432	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	129935824	129935850	129935824	-	RAMPAGE_only	11	13	22	1.075485	3.521928	chr11	129935823	129936258	LTR|ERVL|MER77B	+	chr11	129902339	129942590	PRDM10|ENST00000533431.1	-	129902339,129905637,129910475,129912084,129914703,129915659,129917126,129918538,129923247,129924881,129931015,129932101,129935100,129937597,129942425	129902516,129905741,129910656,129912225,129915018,129915860,129917237,129918718,129923403,129925229,129931258,129932231,129935218,129937670,129942590	0.863636
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	128911427	128911457	128911427	+	RAMPAGE_only	8	8	32	1.564341	4.625000	chr6	128905633	128911663	LINE|L1|L1PA3	-	chr6	128883196	129516569	LAMA2|ENST00000421865.2	+	128883196,129049917,129059783,129098172,129143900,129146958,129148978,129154504,129165575,129177705,129190204,129192679,129250111,129252083,129260710,129267105,129270623,129280060,129287846,129291613,129297684,129300735,129312860,129314654,129315475,129315761,129316037,129320537,129328277,129342342,129349297,129353163,129366218,129369891,129383121,129391490,129393044,129401223,129402323,129403820,129427751,129438645,129440815,129443062,129445666,129452987,129454154,129456334,129460199,129464289,129465144,129473213,129475389,129478692,129481262,129486473,129491900,129492314,129502658,129503090,129505199,129507488,129512362,129514372,129516189	128883357,129050088,129059896,129098415,129144080,129147048,129149096,129154683,129165675,129177866,129190345,129192853,129250213,129252295,129260822,129267219,129270751,129280147,129288058,129291720,129297865,129300872,129313097,129314798,129315655,129315950,129316171,129320655,129328412,129342467,129349384,129353357,129366361,129369990,129383233,129391653,129393255,129401340,129402487,129403959,129427854,129438762,129440998,129443068,129445821,129453131,129454288,129456494,129460324,129464452,129465289,129473352,129475401,129478813,129481439,129486622,129492077,129492483,129502771,129503280,129505355,129507642,129512493,129514595,129516569	0.562500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	217696049	217696058	217696053	+	RAMPAGE_only	2	2	7	0.342200	2.521641	chr1	217690492	217696523	LINE|L1|L1PA2	-	chr1	217737843	217801768	SPATA17|ENST00000492747.2	+	217737843,217739472,217741974,217774333,217782173,217801717	217737967,217739589,217742098,217774537,217782322,217801768	0.714286
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	109314900	109314901	109314900	-	High_confidence	6	6	9	0.439971	2.725481	chr3	109314780	109315092	SINE|Alu|AluSz6	+	chr3	109293819	109314765	MSTRG.36349.2	-	109293819,109300370,109304474,109308031,109309025,109309169,109312544,109314509,109314739	109294004,109300435,109304670,109308293,109309079,109309330,109312692,109314555,109314765	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	40269398	40269399	40269398	+	High_confidence	2418	2476	2951	144.261600	6.786427	chr20	40269053	40269503	LTR|ERV1|LTR7	+	chr20	40269405	40274720	MSTRG.32030.4	+	40269405,40274362	40271601,40274720	0.972891
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	111841585	111841605	111841604	-	High_confidence	3	3	9	0.439971	3.000000	chr12	111841557	111841731	SINE|MIR|MIRb	+	chr12	111839776	111841710	MAPKAPK5-AS1|ENST00000590479.5	-	111839776,111840332,111841326,111841683	111840003,111840477,111841470,111841710	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	71417037	71417116	71417057	+	RAMPAGE_only	11	11	60	2.933140	4.910650	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.766667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	18516080	18516083	18516080	+	RAMPAGE_only	8	8	17	0.831056	3.734522	chr3	18516080	18520244	LINE|L1|L1HS	+	chr3	18526386	18591793	SATB1-AS1|ENST00000629477.2	+	18526386,18527173,18529980,18585619,18586869,18591634	18526540,18527326,18530185,18585762,18586908,18591793	0.705882
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr20	8600634	8600661	8600634	+	High_confidence	3	5	14	0.684399	2.835238	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	166850257	166850353	166850257	+	RAMPAGE_only	6	6	44	2.150969	4.569403	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	136969257	136969268	136969267	+	High_confidence	5	9	18	0.879942	3.725481	chr3	136963693	136969736	LINE|L1|L1HS	-	chr3	136969244	136995506	IL20RB|ENST00000491483.5	+	136969244,136980330,136982159,136989440,136991937,136995413	136969378,136980592,136982350,136989565,136992088,136995506	0.611111
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	70401412	70401479	70401467	+	High_confidence	28	41	302	14.763471	5.996184	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70401421	70447526	MSTRG.41808.17	+	70401421,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70401668,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.887417
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	102374774	102374806	102374774	+	RAMPAGE_only	4	4	13	0.635514	3.026987	chr11	102369166	102375192	LINE|L1|L1PA2	-	chr11	102347373	102378663	BIRC2|ENST00000613397.4	+	102347373,102348597,102350843,102362895,102363667,102368305,102377495,102377856,102377989	102347845,102350749,102350943,102362974,102363716,102368548,102377750,102377898,102378663	0.923077
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	114467016	114467017	114467016	+	High_confidence	3150	3191	3259	159.318385	6.375039	chrX	114466671	114467121	LTR|ERV1|LTR7	+	chrX	114467023	114473432	MSTRG.57209.1	+	114467023	114473432	0.972077
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	126845287	126845290	126845287	-	High_confidence	3	3	7	0.342200	2.807355	chr5	126844448	126845252	LTR|ERV1|HERVH-int	-	chr5	126839381	126845354	MSTRG.43006.1	-	126839381,126845106	126842900,126845354	0.571429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	2867814	2867861	2867850	+	High_confidence	30	30	126	6.159594	5.752059	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.976190
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr16	23689277	23689323	23689308	+	High_confidence	63	70	201	9.826019	5.732781	chr16	23689271	23689332	LINE|RTE-BovB|MamRTE1	+	chr16	23688675	23690038	PLK1|ENST00000564794.1	+	23688675,23689237,23689493,23689859	23688745,23689392,23689772,23690038	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147870875	147870922	147870889	+	High_confidence	38	38	244	11.928102	5.467897	chr5	147870677	147871181	LTR|ERV1|HERVH-int	-	chr5	147870681	147882190	SCGB3A2|ENST00000504320.5	+	147870681,147881445,147882026	147870754,147881648,147882190	0.922131
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	33838219	33838229	33838228	+	RAMPAGE_only	8	8	17	0.831056	3.057476	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.882353
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147870612	147870713	147870679	+	High_confidence	34	37	181	8.848306	5.640766	chr5	147870677	147871181	LTR|ERV1|HERVH-int	-	chr5	147870681	147882190	SCGB3A2|ENST00000504320.5	+	147870681,147881445,147882026	147870754,147881648,147882190	0.922652
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	14710065	14710083	14710065	-	High_confidence	5	5	18	0.879942	3.852169	chr12	14707186	14710156	LTR|ERV1|HERVH-int	-	chr12	14697151	14710628	MSTRG.10904.1	-	14697151	14710628	0.944444
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	24919379	24919418	24919379	+	High_confidence	9	9	29	1.417684	3.022833	chr15	24919148	24919446	SINE|Alu|AluY	+	chr15	24919694	24974434	MSTRG.17009.7	+	24919694,24920010,24920472,24921156,24962113,24967931,24974310	24919719,24920124,24920547,24921255,24962209,24968082,24974434	0.827586
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr17	59107125	59107144	59107125	+	High_confidence	3	4	11	0.537742	2.845351	chr17	59107089	59107281	DNA|hAT-Charlie|MER5A	-	chr17	59106597	59118267	AC099850.1|ENST00000451775.1	+	59106597,59117923	59107591,59118267	0.636364
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	18674090	18674154	18674090	-	High_confidence	10	10	27	1.319913	4.363713	chr5	18671186	18674150	LTR|ERV1|HERVH-int	-	chr5	18649608	18674250	MSTRG.41183.6	-	18649608,18664323,18672041,18674004	18658539,18664434,18672143,18674250	0.962963
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	71697219	71697273	71697272	+	RAMPAGE_only	9	9	49	2.395398	4.321854	chr8	71696590	71697664	LTR|ERVK|MER11C	-	chr8	71675376	71721771	MSTRG.51565.3	+	71675376,71695940	71675535,71721771	0.959184
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	71675282	71675354	71675282	+	High_confidence	1580	1721	3336	163.082581	7.765171	chr8	71674936	71675387	LTR|ERV1|LTR7	+	chr8	71675299	71702786	AC009446.1|ENST00000519840.1	+	71675299,71702214	71675535,71702786	0.702338
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	188033987	188034028	188033987	+	High_confidence	10	10	40	1.955427	4.784184	chr2	188033932	188036618	LTR|ERV1|HERVH-int	+	chr2	188033799	188040599	MSTRG.30176.3	+	188033799,188035422,188039129	188034060,188035756,188040599	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	115318234	115318264	115318263	+	High_confidence	11	11	45	2.199855	4.502313	chr3	115312305	115318470	LINE|L1|L1PA3	-	chr3	115317986	115721482	MSTRG.36491.1	+	115317986,115676012,115720793	115318507,115676610,115721482	0.777778
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	97217088	97217136	97217135	-	High_confidence	26	36	92	4.497481	5.365429	chr9	97216575	97218235	LTR|ERV1|HERVH-int	+	chr9	97215726	97217362	MSTRG.54563.1	-	97215726	97217362	0.750000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	232123840	232123877	232123840	+	RAMPAGE_only	92	92	171	8.359449	5.909509	chr1	232123494	232123945	LTR|ERV1|LTR7	+	chr1	232118456	232150070	MSTRG.4642.2	+	232118456,232120627,232123487	232118713,232120729,232150070	0.672515
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr10	84142737	84142738	84142737	+	RAMPAGE_only	16	16	17	0.831056	2.750000	chr10	84142771	84142861	DNA|hAT-Charlie|Charlie4z	+	chr10	84139439	84153245	GHITM|ENST00000372134.5	+	84139439,84141461,84142654,84143994,84144874,84148729,84150054,84150708,84152263	84139593,84141629,84142754,84144106,84145016,84148838,84150243,84150880,84153245	0.941176
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	120143500	120143501	120143500	+	RAMPAGE_only	35	35	37	1.808770	4.571861	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120036235	120146854	RHOXF1-AS1|ENST00000553843.5	+	120036235,120120851,120138997,120143722,120145637	120036532,120121139,120139119,120143900,120146854	0.891892
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	199955933	199955974	199955973	+	High_confidence	2	2	8	0.391085	2.807355	chr2	199955996	199956125	LINE|L1|L1MDb	+	chr2	199955820	200008540	MAIP1|ENST00000435773.2	+	199955820,199959267,199959753,200005742,200008465	199956248,199959339,199959880,200005777,200008540	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	73109471	73109483	73109471	+	RAMPAGE_only	4	5	16	0.782171	3.773557	chr14	73109511	73109779	SINE|Alu|AluY	+	chr14	73107301	73121313	RBM25|ENST00000527449.1	+	73107301,73109341,73110830,73112151,73114285,73119712	73107899,73109492,73111802,73112250,73114333,73121313	0.937500
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	3062822	3062831	3062830	-	High_confidence	4	4	11	0.537742	2.521928	chr19	3062800	3062899	SINE|MIR|MIRc	+	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.909091
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	118952350	118952394	118952385	-	RAMPAGE_only	23	23	56	2.737597	4.742825	chr5	118952282	118952646	LTR|ERV1|LTR7	-	chr5	118836073	118988220	DTWD2|NM_001308081.1	-	118836073,118848089,118928536,118939195,118944558,118988129	118841087,118848218,118928729,118939290,118944649,118988220	0.732143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	92440327	92440343	92440327	+	High_confidence	5	5	10	0.488857	2.503258	chr4	92440000	92440659	LTR|ERV1|HERVH-int	-	chr4	92440527	92638411	MSTRG.39531.6	+	92440527,92590130,92600191	92442310,92599528,92638411	0.700000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	18658523	18658542	18658537	-	RAMPAGE_only	4	5	14	0.684399	3.180833	chr5	18658018	18658506	LTR|ERV1|MER66B	-	chr5	18649608	18674250	MSTRG.41183.6	-	18649608,18664323,18672041,18674004	18658539,18664434,18672143,18674250	0.857143
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	32816766	32816781	32816766	+	High_confidence	5	7	11	0.537742	2.663533	chr1	32816717	32816919	LINE|L2|L2c	+	chr1	32816766	32826489	S100PBP|ENST00000530710.5	+	32816766,32825312,32826097	32816982,32825429,32826489	0.818182
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	131901896	131901970	131901896	+	High_confidence	1343	1386	2381	116.396771	7.461892	chr6	131901549	131902003	LTR|ERV1|LTR7	+	chr6	131901962	131920565	AL117378.1|ENST00000454596.1	+	131901962,131918449	131902151,131920565	0.637967
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	36805376	36805377	36805376	-	RAMPAGE_only	9	9	9	0.439971	2.503258	chr18	36805277	36805349	LINE|L2|L2b	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	13806653	13806685	13806684	-	High_confidence	44	57	110	5.377423	5.638290	chr7	13806269	13812292	LINE|L1|L1PA2	+	chr7	13795859	13806692	MSTRG.47780.1	-	13795859	13806692	0.827273
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	11681436	11681437	11681436	+	High_confidence	15	16	17	0.831056	3.250000	chr2	11681255	11681626	LTR|ERVL-MaLR|MSTA	+	chr2	11681459	11683323	AC106875.1|ENST00000455754.1	+	11681459,11682297	11681492,11683323	0.647059
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	6200609	6200658	6200614	-	High_confidence	66	68	395	19.309838	4.422311	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.997468
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	125155015	125155016	125155015	-	High_confidence	47	47	52	2.542055	4.246964	chrX	125154598	125156024	LTR|ERV1|LTR12C	-	chrX	124375907	125154792	MSTRG.57414.2	-	124375907,124382669,124383633,124385676,124392051,124405030,124406316,124420310,124422271,124453336,124481731,124487208,124497015,124503559,124520516,124523363,124529863,124546873,124561670,124563748,124565374,124641790,124645142,124646708,124651913,124653583,124671682,124705012,124736956,124894295,124895980,124963536,125154560	124381294,124382812,124384854,124386064,124392348,124405266,124406489,124420821,124422638,124453491,124481964,124487229,124497265,124503703,124520784,124523625,124529983,124547090,124561817,124563772,124565560,124641991,124645337,124646810,124652124,124653783,124671835,124705251,124737197,124894352,124896241,124963817,125154792	0.846154
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr14	77723180	77723181	77723180	-	RAMPAGE_only	12	12	13	0.635514	2.792481	chr14	77722838	77723146	SINE|Alu|AluY	-	chr14	77717598	77761154	SNW1|NM_012245.2	-	77717598,77718366,77720710,77723180,77730987,77732484,77734946,77735936,77736970,77738777,77738965,77751318,77754966,77761113	77718286,77718530,77720828,77723277,77731129,77732601,77735012,77736006,77737075,77738884,77739061,77751480,77755120,77761154	0.923077
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	113773685	113773692	113773685	-	High_confidence	13	15	25	1.222142	3.703465	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113744576	113773683	LINC01234|NR_110026.1	-	113744576,113767074,113773614	113746595,113767208,113773683	0.920000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	36330313	36330347	36330335	-	High_confidence	3	3	12	0.586628	2.855389	chr19	36327346	36330482	LTR|ERV1|HERVS71-int	-	chr19	36313076	36330447	LINC00665|ENST00000449434.6	-	36313076,36315956,36321299,36321992,36330252	36313322,36316070,36321357,36322030,36330447	0.583333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr1	24151496	24151543	24151504	+	High_confidence	43	54	158	7.723935	5.495213	chr1	24151159	24151642	LTR|ERV1|LTR10D	-	chr1	24151510	24160448	MSTRG.711.1	+	24151510,24155011,24157254	24151739,24155192,24160448	0.943038
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	92442153	92442194	92442158	+	RAMPAGE_only	266	306	1597	78.070408	6.532852	chr4	92441280	92444201	LTR|ERV1|HERVH-int	-	chr4	92440527	92638411	MSTRG.39531.6	+	92440527,92590130,92600191	92442310,92599528,92638411	0.758297
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr8	32927967	32927984	32927976	+	High_confidence	455	480	952	46.539154	6.947303	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927978	33049088	MSTRG.51132.2	+	32927978,33041634,33044366	32928093,33041771,33049088	0.818277
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr21	23372947	23372978	23372977	-	RAMPAGE_only	5	7	13	0.635514	3.546594	chr21	23372531	23373371	DNA|hAT-Charlie|Charlie6	-	chr21	23361103	23384835	D21S2088E|NR_040254.1	-	23361103,23364037,23372326,23372947,23384687	23362239,23364193,23372448,23373084,23384835	0.692308
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr12	45190910	45190911	45190910	-	RAMPAGE_only	11	13	15	0.733285	3.182006	chr12	45190569	45191052	LTR|ERVL-MaLR|MLT1J	+	chr12	45173033	45216006	PLEKHA8P1|NR_037144.1	-	45173033,45176240,45215939	45174642,45176433,45216006	0.600000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	206812094	206812115	206812100	-	High_confidence	7	7	19	0.928828	3.419382	chr2	206809175	206812174	LTR|ERV1|HERVH-int	-	chr2	206803162	206812273	MSTRG.30582.1	-	206803162,206812028	206807238,206812273	0.684211
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr9	20658568	20658624	20658568	+	High_confidence	16	16	51	2.493169	3.771398	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.784314
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	42862138	42862167	42862166	-	RAMPAGE_only	9	11	26	1.271027	4.163856	chr13	42861829	42862173	LINE|L2|L2	+	chr13	42850246	42872744	LINC00428|NR_126388.1	-	42850246,42862087,42872557	42850692,42862165,42872744	0.884615
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	22812109	22812110	22812109	-	RAMPAGE_only	6	6	6	0.293314	2.584963	chr7	22812087	22812182	LINE|CR1|L3b	+	chr7	22492676	22632925	STEAP1B|ENST00000439708.1	-	22492676,22493323,22494771,22632809	22492729,22493836,22494886,22632925	0.500000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	128098289	128098306	128098305	+	RAMPAGE_only	6	6	17	0.831056	3.500000	chr4	128098347	128098409	LINE|L1|L1MC2	+	chr4	128077840	128122352	LARP1B|ENST00000507377.1	+	128077840,128082164,128091000,128091346,128098185,128107138,128114569,128121825	128077962,128082305,128091144,128091512,128098330,128107313,128114742,128122352	0.823529
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	33838256	33838277	33838256	+	RAMPAGE_only	5	5	13	0.635514	3.418296	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.846154
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	16697526	16697604	16697546	-	High_confidence	5	5	42	2.053198	4.469592	chr3	16697224	16697676	LTR|ERV1|LTR49-int	-	chr3	16592027	16697860	MSTRG.34468.3	-	16592027,16593654,16594532,16595313,16596749,16596987,16597489,16598086,16598451,16637884,16647573,16697378	16592148,16593768,16594583,16595385,16596889,16597051,16597541,16598178,16598598,16638085,16648612,16697860	0.761905
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	30642597	30642640	30642639	+	High_confidence	5	5	20	0.977713	3.260828	chr7	30636808	30642830	LINE|L1|L1PA2	-	chr7	30642670	30654546	MSTRG.48093.1	+	30642670,30654317	30642836,30654546	0.800000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr2	67330210	67330236	67330235	+	RAMPAGE_only	5	7	12	0.586628	2.918296	chr2	67330062	67330435	LTR|ERVL-MaLR|MLT1A0	+	chr2	67331749	67345680	MSTRG.28003.1	+	67331749,67333952,67337515	67332062,67334150,67345680	0.833333
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	88533222	88533246	88533222	-	RAMPAGE_only	39	39	65	3.177568	5.019129	chr4	88532886	88533429	LTR|ERVL|MLT2A2	-	chr4	88520984	88523813	PYURF|ENST00000273968.4	-	88520984,88523497	88522029,88523813	0.830769
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	187999120	187999121	187999120	+	RAMPAGE_only	11	11	15	0.733285	3.139572	chr4	187999095	187999196	SINE|Alu|AluSx3	-	chr4	187995770	188005050	ZFP42|NM_174900.4	+	187995770,187999107,187999608,188002712	187995840,187999273,187999685,188005050	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr5	147871757	147871779	147871767	+	High_confidence	11	11	33	1.613227	4.077820	chr5	147871298	147874075	LTR|ERV1|HERVH-int	-	chr5	147872017	147882191	SCGB3A2|ENST00000514688.1	+	147872017,147881445,147882026	147872321,147881648,147882191	0.969697
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	145334221	145334239	145334238	+	High_confidence	3	3	8	0.391085	2.521641	chr3	145333210	145334513	LTR|ERV1|LTR12C	+	chr3	145334132	145375812	MSTRG.37226.1	+	145334132,145373696,145375427	145334524,145373754,145375812	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	57375929	57375954	57375953	+	High_confidence	3	3	8	0.391085	2.521641	chr15	57376003	57376041	LINE|L2|L2a	+	chr15	57375966	57550727	MSTRG.17755.1	+	57375966,57376925,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547351	57376270,57377165,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.875000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	95740418	95740460	95740459	+	RAMPAGE_only	7	7	22	1.075485	3.748995	chr13	95733699	95740837	LINE|L1|L1PA2	-	chr13	95677157	95791843	DNAJC3|ENST00000376795.6	+	95677157,95709226,95723241,95725177,95760039,95760678,95763642,95763832,95785938,95787006,95790872	95677337,95709337,95723366,95725252,95760221,95760798,95763748,95763953,95786071,95787155,95791843	0.681818
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	25115313	25115374	25115354	+	RAMPAGE_only	15	28	105	5.132995	4.876610	chr15	25115166	25115549	LTR|ERVL|MER54A	+	chr15	25099498	25120432	MSTRG.17009.63	+	25099498,25103858,25106163,25107471,25107909,25108997,25109197,25109554,25111764,25115298,25117409,25118267,25119064	25100890,25103970,25106294,25107588,25108038,25109103,25109403,25109715,25111894,25115656,25117515,25118382,25120432	1.000000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chrX	125386991	125387027	125387026	-	RAMPAGE_only	3	3	14	0.684399	3.180833	chrX	125386442	125387031	LTR|ERV1|MER41C	+	chrX	125381842	125394194	MSTRG.57391.2	-	125381842,125393961	125387305,125394194	0.928571
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr15	63061548	63061549	63061548	+	RAMPAGE_only	12	12	18	0.879942	3.616875	chr15	63061546	63061609	SINE|tRNA-Deu|AmnSINE2	-	chr15	63042683	63071323	TPM1|ENST00000560975.5	+	63042683,63056984,63059562,63060868,63061197,63062575,63071089	63043831,63057118,63059680,63060939,63062277,63062645,63071323	0.666667
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr6	77369082	77369167	77369106	-	RAMPAGE_only	16	16	74	3.617539	5.429866	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77150827	77273302	MSTRG.45760.1	-	77150827,77151818,77271339,77273026	77151280,77151974,77271493,77273302	0.554054
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	186662376	186662387	186662376	-	RAMPAGE_only	7	7	20	0.977713	3.576618	chr3	186662047	186662706	LTR|ERV1|HERVH-int	+	chr3	186641534	186695982	AC068631.1|ENST00000630315.2	-	186641534,186641953,186642220,186647041,186651193,186651409,186695841	186641623,186642128,186642294,186647162,186651329,186651494,186695982	0.650000
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr7	20125149	20125205	20125170	-	High_confidence	40	41	344	16.816669	6.919779	chr7	20124844	20125470	LTR|ERV1|HERVH-int	+	chr7	19906821	20125162	MSTRG.47883.1	-	19906821,19919865,19960921,19968136,20028918,20045502,20125079	19919260,19919977,19960994,19968395,20028959,20045561,20125162	0.662791
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr11	94650351	94650352	94650351	+	High_confidence	345	346	422	20.629751	6.799489	chr11	94650207	94650507	LTR|ERV1|MER51B	+	chr11	94650295	94667056	MSTRG.9598.9	+	94650295,94650841	94650537,94667056	0.630332
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr3	58842528	58842596	58842572	-	High_confidence	6	7	43	2.102084	4.563023	chr3	58842154	58848179	LINE|L1|L1PA2	+	chr3	58741963	58842358	MSTRG.35513.5	-	58741963,58753768,58806394,58842146	58742572,58753863,58806456,58842358	0.883721
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr13	42872629	42872644	42872643	-	High_confidence	16	17	27	1.319913	4.014147	chr13	42869731	42872703	LTR|ERV1|HERVH-int	-	chr13	42836602	42872802	MSTRG.13907.2	-	42836602,42842798,42870600	42842551,42868464,42872802	0.925926
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr4	42292641	42292642	42292641	-	High_confidence	35	35	43	2.102084	3.866835	chr4	42292137	42292896	LTR|ERV1|LTR17	-	chr4	42285912	42292627	MSTRG.38862.1	-	42285912,42292106	42286401,42292627	0.953488
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr19	20227803	20227862	20227859	-	RAMPAGE_only	29	29	70	3.421997	5.202302	chr19	20227425	20228481	LINE|L1|L1P2	-	chr19	19724733	20238431	MSTRG.25476.1	-	19724733,20226749,20238287	19724754,20228483,20238431	0.971429
induced_pluripotent_stem_cell_male_adult_53_years_derived_from_fibroblast_of_arm	chr18	73324972	73324977	73324976	+	High_confidence	6	6	10	0.488857	2.641604	chr18	73324614	73325047	LTR|ERV1|LTR7Y	+	chr18	73324940	73349878	LINC02582|ENST00000563172.1	+	73324940,73332464,73349083	73325193,73332581,73349878	0.500000
K562	chr17	3917483	3917520	3917510	-	High_confidence	3	3	12	0.515487	3.277613	chr17	3917356	3917479	SINE|MIR|MIR3	-	chr17	3896590	3916666	P2RX1|NM_002558.3	-	3896590,3898008,3898483,3898933,3899633,3903201,3903550,3903927,3904329,3904857,3905219,3916088	3897879,3898110,3898549,3899024,3899761,3903343,3903631,3904024,3904399,3904929,3905367,3916666	0.500000
K562	chrX	283480	283509	283508	+	High_confidence	8	21	42	1.804204	5.046457	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.928571
K562	chr10	110083464	110083481	110083464	+	RAMPAGE_only	15	15	49	2.104904	4.923398	chr10	110083314	110083542	SINE|Alu|AluY	+	chr10	110077004	110117395	ADD3|ENST00000468345.1	+	110077004,110100624,110112776,110116258,110117341	110077118,110100848,110112915,110116410,110117395	0.897959
K562	chr1	157274889	157274908	157274892	+	High_confidence	33	38	75	3.221792	5.573118	chr1	157274375	157275504	LTR|ERV1|HERVFH21-int	-	chr1	157274866	157284082	MSTRG.2047.1	+	157274866,157282577	157274922,157284082	0.733333
K562	chrX	131579028	131579123	131579122	-	High_confidence	13	15	106	4.553466	3.940069	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.915094
K562	chr8	3183046	3183088	3183077	-	High_confidence	200	226	1108	47.596612	5.020465	chr8	3182937	3183057	SINE|Alu|AluY	-	chr8	3096901	3183146	MSTRG.26842.9	-	3096901,3106527,3107717,3108602,3110157,3118398,3142464,3151396,3157896,3162158,3181109,3182990	3097037,3106641,3107798,3108748,3110335,3118587,3142674,3151513,3157966,3162277,3181214,3183146	0.958484
K562	chr14	102083129	102083147	102083129	-	RAMPAGE_only	1	1	7	0.300701	2.584963	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.857143
K562	chr12	123388440	123388466	123388462	+	High_confidence	4	7	20	0.859145	3.028213	chr12	123388469	123388649	SINE|MIR|MIRb	+	chr12	123389270	123405074	KMT5A|ENST00000461103.5	+	123389270,123390629,123395046,123396344,123403572,123404883	123389554,123390786,123395266,123396432,123403632,123405074	0.900000
K562	chr3	44439853	44439917	44439896	-	High_confidence	97	190	516	22.165931	6.103048	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421126	44439917	C3orf86|ENST00000636468.1	-	44421126,44439796	44421813,44439917	0.600775
K562	chr17	50271485	50271486	50271485	+	High_confidence	10	10	13	0.558444	3.180833	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
K562	chr20	33743945	33743994	33743993	+	RAMPAGE_only	5	5	27	1.159845	4.026987	chr20	33744004	33744312	SINE|Alu|AluSq	+	chr20	33732009	33792269	ZNF341|ENST00000483118.5	+	33732009,33740901,33745102,33748922,33753171,33757147,33758715,33761861,33766850,33770083,33783731,33788862,33789517,33790987	33732052,33741012,33745299,33749072,33753423,33757343,33758806,33762055,33767041,33770292,33783864,33788974,33789588,33792269	0.703704
K562	chr7	116724043	116724052	116724051	+	High_confidence	3	4	6	0.257743	2.584963	chr7	116718497	116724489	LINE|L1|L1PA2	-	chr7	116724145	116755414	MET|ENST00000495962.1	+	116724145,116724771,116731667,116739949,116740851,116755354	116724249,116724847,116731859,116740084,116741025,116755414	0.500000
K562	chr9	72874117	72874135	72874129	-	High_confidence	2	3	9	0.386615	2.500000	chr9	72873937	72874322	LTR|ERVL-MaLR|MSTA	-	chr9	72871727	72874109	LINC01474|NR_121120.1	-	72871727,72872108,72873026,72874015	72872020,72872231,72873155,72874109	0.777778
K562	chr5	140655985	140655987	140655985	+	RAMPAGE_only	11	17	23	0.988016	3.202546	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.956522
K562	chr5	95706421	95706449	95706421	+	RAMPAGE_only	10	15	37	1.589418	3.251991	chr5	95706209	95706598	LTR|ERVL-MaLR|MSTA	+	chr5	95717632	95756093	RHOBTB3|ENST00000504949.1	+	95717632,95731858,95736888,95748332,95752238,95755395	95717765,95732084,95737075,95748487,95752350,95756093	0.891892
K562	chr9	73160375	73160376	73160375	+	High_confidence	9	9	11	0.472530	2.913977	chr9	73160421	73160511	SINE|MIR|MIR	+	chr9	73160284	73165544	ANXA1|ENST00000489109.1	+	73160284,73160802,73162781,73163475,73165115	73160376,73160893,73162861,73163532,73165544	0.636364
K562	chr2	96895120	96895162	96895132	-	High_confidence	1844	1926	4389	188.539286	6.238476	chr2	96894981	96895398	LINE|L1|L1MC5a	-	chr2	96876025	96895142	FAM178B|ENST00000470789.5	-	96876025,96877889,96878415,96893925,96895060	96876308,96878042,96878493,96894051,96895142	0.963090
K562	chr9	74771094	74771105	74771104	-	RAMPAGE_only	4	4	12	0.515487	2.845351	chr9	74771024	74771564	LINE|L2|L2a	+	chr9	74722494	74887347	TRPM6|ENST00000361255.7	-	74722494,74728238,74732684,74738406,74739366,74739722,74742560,74744094,74747888,74750663,74752276,74755352,74761695,74761998,74771702,74775882,74782361,74782678,74785873,74788613,74792623,74796740,74800253,74801897,74803793,74808033,74810814,74812298,74816668,74816891,74820303,74821668,74827777,74833997,74840023,74842165,74855526,74858668,74887230	74724746,74728345,74732736,74738612,74739449,74740009,74742626,74744145,74747914,74750722,74752368,74755473,74761808,74763134,74771835,74776076,74782476,74782853,74786125,74788742,74792770,74796893,74800482,74802175,74803886,74808174,74810868,74812433,74816769,74816964,74820427,74821837,74827949,74834122,74840237,74842343,74855565,74858748,74887347	0.500000
K562	chr8	66926450	66926523	66926450	-	High_confidence	79	84	171	7.345686	4.613536	chr8	66926412	66926708	SINE|Alu|AluY	-	chr8	66922017	66926398	SNHG6|ENST00000520619.1	-	66922017,66922323,66922613,66926197	66922114,66922392,66922725,66926398	0.918129
K562	chr12	56007060	56007061	56007060	+	High_confidence	7	8	8	0.343658	3.000000	chr12	56006930	56007183	LTR|ERV1|MER4A1	+	chr12	56007658	56038435	IKZF4|ENST00000262032.9	+	56007658,56011416,56018125,56019317,56021430,56023670,56025053,56026780,56027779,56032560,56033189,56034570	56007734,56011494,56018177,56019415,56021580,56023764,56025158,56027041,56027947,56032710,56033321,56038435	0.625000
K562	chr20	6322042	6322043	6322042	+	RAMPAGE_only	30	30	39	1.675332	3.146276	chr20	6321937	6322242	SINE|Alu|AluY	-	chr20	6426731	6528459	CASC20|NR_109953.1	+	6426731,6446722,6473538,6527193	6426810,6446823,6473655,6528459	0.846154
K562	chr6	37423937	37423988	37423984	+	High_confidence	77	77	334	14.347715	6.390767	chr6	37423607	37424237	LTR|ERV1|LTR9	-	chr6	37423942	37462061	MSTRG.24249.1	+	37423942,37432347,37435623,37443998,37446290,37450250,37451805,37453046,37453239,37458611,37459565,37461548,37461969	37424049,37432459,37435762,37444150,37446449,37450343,37451877,37453141,37453312,37458810,37459684,37461645,37462061	0.763473
K562	chr21	45593653	45593667	45593653	+	High_confidence	194	197	383	16.452619	5.137789	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	0.950392
K562	chr1	60640470	60640497	60640470	-	High_confidence	4	6	26	1.116888	4.286790	chr1	60640012	60646037	LINE|L1|L1PA2	+	chr1	60540248	60640491	LINC01748|ENST00000439156.2	-	60540248,60542296,60573337,60588036,60595537,60600126,60640010,60640271	60540433,60542411,60573413,60588162,60596373,60600250,60640126,60640491	0.615385
K562	chr14	81427166	81427199	81427178	-	High_confidence	7	8	22	0.945059	2.949464	chr14	81426946	81427161	SINE|MIR|MIR	-	chr14	81260649	81427212	STON2|NM_033104.3	-	81260649,81276900,81370987,81395893,81398294,81427101	81270872,81278739,81371185,81396178,81398580,81427212	0.954545
K562	chr11	17352281	17352295	17352281	+	High_confidence	55	57	119	5.111910	5.774999	chr11	17352168	17352474	SINE|Alu|AluY	-	chr11	17351898	17383531	MSTRG.4299.2	+	17351898,17356650,17367008,17368866,17372005	17354320,17357001,17367347,17368964,17383531	1.000000
K562	chr7	93591277	93591394	93591324	+	High_confidence	59	69	393	16.882192	5.072846	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591296	93809231	MSTRG.26057.1	+	93591296,93807203	93591771,93809231	0.921120
K562	chr2	200174782	200174807	200174806	-	High_confidence	43	50	138	5.928098	5.313597	chr2	200174601	200175916	LTR|ERV1|LTR12C	+	chr2	199971832	200175153	MSTRG.17086.1	-	199971832,200010690,200174569	199972044,200010896,200175153	0.739130
K562	chr4	184855601	184855606	184855601	-	RAMPAGE_only	4	4	10	0.429572	3.169925	chr4	184855538	184855766	LTR|ERVL-MaLR|MLT1J1	-	chr4	184843295	184847046	MIR3945HG|NR_037867.1	-	184843295,184846895	184846534,184847046	0.700000
K562	chr6	26956544	26956619	26956553	-	High_confidence	9	13	59	2.534477	5.034284	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.694915
K562	chr3	36925056	36925086	36925056	-	RAMPAGE_only	4	4	12	0.515487	3.027169	chr3	36923610	36925588	LTR|ERV1|MER83A-int	+	chr3	36899106	36908518	TRANK1|ENST00000463764.2	-	36899106,36903148,36908322	36899259,36903275,36908518	0.833333
K562	chr6	34219370	34219371	34219370	+	High_confidence	11	12	15	0.644358	2.682589	chr6	34219234	34219371	SINE|Alu|AluSx	+	chr6	34219438	34220066	CYCSP55|ENST00000399027.3	+	34219438,34220022	34219705,34220066	0.666667
K562	chr7	6126646	6126699	6126646	+	RAMPAGE_only	41	47	105	4.510509	4.384805	chr7	6126583	6126676	LINE|L1|L1MD1	-	chr7	6116479	6155147	USP42|ENST00000426246.2	+	6116479,6135840,6139091,6140127,6140913,6142931,6144084,6145515,6146147,6147738,6149582,6150411,6153755	6116939,6135951,6139194,6140195,6140984,6143014,6144196,6145656,6146248,6147892,6150302,6150506,6155147	0.952381
K562	chr5	102671628	102671693	102671672	-	High_confidence	15	16	51	2.190819	4.792982	chr5	102671229	102677260	LINE|L1|L1PA2	+	chr5	102609155	102671559	LINC00491|ENST00000510145.1	-	102609155,102671226	102609766,102671559	0.784314
K562	chr12	91680280	91680281	91680280	+	High_confidence	20	20	22	0.945059	3.721928	chr12	91679985	91680315	SINE|Alu|AluSc8	-	chr12	91680130	91748198	MSTRG.6541.1	+	91680130,91680789,91693860,91737926	91680614,91680872,91694185,91748198	0.636364
K562	chr8	12522764	12522782	12522775	+	RAMPAGE_only	7	7	18	0.773230	3.572431	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	1.000000
K562	chr6	43013392	43013393	43013392	-	High_confidence	20	20	26	1.116888	4.293661	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.961538
K562	chr7	102973632	102973697	102973696	+	High_confidence	29	30	65	2.792220	5.075237	chr7	102973616	102974108	LTR|ERV1|HERVH48-int	+	chr7	102973521	102988856	MSTRG.26218.4	+	102973521,102978380,102986110,102988032,102988374	102973771,102978520,102986286,102988232,102988856	0.661538
K562	chr1	194859078	194859112	194859088	-	High_confidence	944	978	1935	83.122242	6.221534	chr1	194858882	194860246	LTR|ERV1|LTR12C	+	chr1	194673760	194859112	MSTRG.2385.2	-	194673760,194858846	194674064,194859112	0.604651
K562	chr2	208571975	208572010	208572009	+	RAMPAGE_only	14	15	47	2.018990	4.838567	chr2	208571876	208572079	LTR|ERVL-MaLR|MLT1L	+	chr2	208542641	208825587	LOC101927960|NR_136588.1	+	208542641,208572012,208656825,208819551,208824194,208825398	208542991,208572167,208656989,208819655,208824350,208825587	0.659574
K562	chr4	31997575	31997576	31997575	+	High_confidence	4	4	7	0.300701	2.584963	chr4	31996206	31997789	LTR|ERV1|LTR12C	+	chr4	31997396	32069294	MSTRG.21242.1	+	31997396,32068844	31997822,32069294	0.857143
K562	chr5	128082256	128082276	128082264	-	High_confidence	17	24	71	3.049963	5.211216	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127966734	128082881	LINC01184|ENST00000508353.5	-	127966734,128076946,128082734	127966928,128077093,128082881	0.507042
K562	chr16	2757779	2757802	2757779	+	High_confidence	3	3	8	0.343658	2.807355	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.875000
K562	chr2	169665059	169665086	169665059	-	High_confidence	52	54	130	5.584440	5.888219	chr2	169664891	169665263	LTR|ERVL|LTR52	-	chr2	169645743	169665069	MSTRG.16803.2	-	169645743,169649181,169650328,169654074,169662279,169665003	169646182,169649346,169650521,169654214,169662436,169665069	0.984615
K562	chr15	98103717	98103718	98103717	-	High_confidence	29	29	35	1.503503	3.207146	chr15	98103301	98104789	LTR|ERV1|LTR12C	-	chr15	98085692	98103712	LINC01582|ENST00000560195.1	-	98085692,98103234	98085774,98103712	0.914286
K562	chr2	11856335	11856363	11856335	+	RAMPAGE_only	2	2	9	0.386615	2.750000	chr2	11856287	11856349	LINE|L2|L2-3_Crp	-	chr2	11848621	11866284	MIR3681HG|ENST00000429878.1	+	11848621,11865849	11848744,11866284	0.777778
K562	chr6	140148410	140148442	140148437	-	High_confidence	15	15	62	2.663348	4.709747	chr6	140147768	140148683	LTR|ERV1|LTR12C	-	chr6	140137672	140148414	MSTRG.24993.1	-	140137672,140143894,140148094	140140649,140143970,140148414	0.983871
K562	chr21	14753821	14753852	14753844	-	High_confidence	92	93	346	14.863202	6.293302	chr21	14753560	14753996	LINE|L1|L1MB1	+	chr21	14728433	14753900	MSTRG.18237.1	-	14728433,14753323	14729335,14753900	0.815029
K562	chr7	153413933	153413936	153413933	-	High_confidence	2711	2769	4549	195.412443	7.244430	chr7	153413807	153414153	LTR|ERV1|HERV-Fc1_LTR1	-	chr7	153355364	153413936	MSTRG.26734.1	-	153355364,153361047,153405491,153406955,153412090	153356481,153361220,153405598,153407084,153413936	0.896461
K562	chr20	54059018	54059020	54059018	-	High_confidence	4	8	11	0.472530	2.845351	chr20	54058856	54059213	LTR|ERVL-MaLR|THE1D	-	chr20	53943537	54059020	BCAS1|NM_001323347.1	-	53943537,53953431,53975388,53985286,53995011,53995891,54028391,54058084,54058646,54058974	53944996,53953695,53975430,53985499,53995056,53996050,54028972,54058154,54058723,54059020	1.000000
K562	chr16	12048195	12048238	12048200	+	RAMPAGE_only	24	24	85	3.651365	5.082214	chr16	12048151	12048235	SINE|Alu|AluSz6	-	chr16	12038709	12051868	SNX29|ENST00000568359.1	+	12038709,12042896,12046383,12048371,12051846	12038787,12043077,12046454,12048620,12051868	0.917647
K562	chr7	8303893	8303910	8303909	+	High_confidence	8	8	20	0.859145	3.241446	chr7	8298113	8304140	LINE|L1|L1PA3	-	chr7	8303753	8340523	AC007128.2|ENST00000606016.1	+	8303753,8340382	8304155,8340523	0.950000
K562	chrX	87728525	87728564	87728525	-	High_confidence	4	5	17	0.730273	3.146286	chrX	87727773	87728475	LTR|ERV1|MER61-int	-	chrX	87723929	87728692	MSTRG.29610.1	-	87723929,87728443	87724212,87728692	0.882353
K562	chr1	187072503	187072515	187072503	+	High_confidence	14	14	33	1.417589	4.635007	chr1	187072401	187072600	SINE|Alu|AluY	-	chr1	187072512	187480614	ERVMER61-1|ENST00000609113.2	+	187072512,187092824,187328990,187443627,187480289	187073024,187092946,187329060,187443726,187480614	0.787879
K562	chr3	9363409	9363426	9363418	+	High_confidence	5	6	14	0.601401	2.610577	chr3	9363443	9363535	LINE|L2|L2b	+	chr3	9363097	9384870	THUMPD3|ENST00000515662.6	+	9363097,9365015,9366907,9371059,9374515,9377818,9380502,9383198,9384211,9384523	9363728,9365320,9366985,9371536,9374646,9377888,9380618,9383309,9384335,9384870	1.000000
K562	chr2	73736756	73736757	73736756	-	High_confidence	20	20	20	0.859145	3.646439	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73729889	73737335	MSTRG.16025.5	-	73729889,73730559,73732162,73734428,73737301	73730029,73730736,73732285,73734588,73737335	0.950000
K562	chr6	15555747	15555789	15555747	+	High_confidence	124	124	250	10.739308	5.897025	chr6	15555299	15555924	LTR|ERV1|MER41B	+	chr6	15555764	15570480	MSTRG.23801.1	+	15555764,15558985,15570324	15556008,15561199,15570480	0.972000
K562	chr19	18227905	18227906	18227905	-	RAMPAGE_only	23	23	23	0.988016	3.584012	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
K562	chr14	27673218	27673253	27673239	-	High_confidence	19	19	46	1.976033	4.860238	chr14	27673059	27679095	LINE|L1|L1PA3	+	chr14	27321921	27673221	AL390334.1|ENST00000556890.1	-	27321921,27656337,27673028	27322141,27656502,27673221	0.630435
K562	chr4	22778706	22778718	22778717	+	High_confidence	41	44	63	2.706306	4.428885	chr4	22777716	22779135	LTR|ERV1|LTR12C	-	chr4	22778709	22779206	MSTRG.21180.1	+	22778709	22779206	0.761905
K562	chr4	127655803	127655872	127655803	+	RAMPAGE_only	7	7	45	1.933075	4.522750	chr4	127650220	127656245	LINE|L1|L1PA2	-	chr4	127632965	127716479	INTU|ENST00000503952.5	+	127632965,127643520,127656635,127663380,127669035,127674123,127684408,127685441,127687740,127700009,127704227,127705590,127706486,127708570,127710912,127713935,127716324	127633180,127644056,127656721,127663584,127669154,127674213,127684486,127685569,127687867,127700063,127704290,127705812,127706969,127708668,127711102,127714093,127716479	0.866667
K562	chr7	72412340	72412341	72412340	-	High_confidence	171	180	212	9.106933	6.391461	chr7	72412058	72412621	LTR|ERV1|LTR12_	-	chr7	71779490	72412373	CALN1|ENST00000395275.6	-	71779490,71810335,72023656,72106150,72278685,72403250,72412057	71787902,71810492,72023769,72106294,72278810,72403442,72412373	0.839623
K562	chr6	70394737	70394754	70394737	+	High_confidence	14	15	30	1.288717	4.256565	chr6	70394625	70395013	LTR|ERV1|MER48	+	chr6	70394886	70399417	AL365226.2|ENST00000418403.1	+	70394886,70395229,70399214	70395043,70395266,70399417	0.500000
K562	chr15	30624357	30624363	30624357	+	High_confidence	5	6	17	0.730273	3.337175	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.588235
K562	chr1	168220611	168220663	168220662	-	High_confidence	128	131	624	26.805312	6.087386	chr1	168220433	168220794	LTR|ERVL-MaLR|THE1D	-	chr1	168207161	168220646	MSTRG.2171.1	-	168207161,168220514	168208717,168220646	0.955128
K562	chr12	19404015	19404043	19404040	+	High_confidence	4	4	11	0.472530	2.921928	chr12	19403969	19404613	LINE|L1|L1PBb	-	chr12	19404065	19518192	AEBP2|ENST00000541908.5	+	19404065,19462509,19473247,19493799,19500096,19512397,19514670,19518086	19404124,19462717,19473355,19493986,19500221,19512465,19514784,19518192	0.727273
K562	chr19	48994931	48994932	48994931	+	RAMPAGE_only	31	31	31	1.331674	3.800182	chr19	48994647	48994932	SINE|Alu|AluSz	+	chr19	48993909	49009882	RUVBL2|ENST00000593570.5	+	48993909,48999318,49001348,49003278,49004276,49007017,49007301,49009775	48993923,48999373,49001590,49003334,49004418,49007147,49007368,49009882	0.935484
K562	chr8	38151929	38151991	38151970	-	High_confidence	9	10	33	1.417589	4.741364	chr8	38151792	38151924	SINE|MIR|MIR3	-	chr8	38143648	38151265	STAR|ENST00000276449.8	-	38143648,38145221,38145962,38146288,38148199,38148640,38150754	38144386,38145315,38146147,38146447,38148327,38148754,38151265	0.848485
K562	chr3	178860366	178860441	178860393	-	High_confidence	73	76	278	11.942110	5.697618	chr3	178859948	178865979	LINE|L1|L1PA2	+	chr3	178525466	178860405	KCNMB2-AS1|NR_126561.1	-	178525466,178748428,178749045,178801792,178859488,178860293	178526625,178748485,178749236,178801934,178859623,178860405	0.701439
K562	chr19	4470819	4470853	4470852	+	High_confidence	4	5	10	0.429572	2.721928	chr19	4470709	4471019	SINE|Alu|AluY	-	chr19	4470909	4502201	MSTRG.13982.1	+	4470909,4475274,4475444,4488675,4491565,4491763,4493702,4493981,4494165,4496301,4496918,4498305,4498813,4499490,4501190,4501910	4471024,4475351,4475583,4488876,4491682,4491835,4493862,4494057,4494475,4496405,4498031,4498376,4498915,4499704,4501317,4502201	0.600000
K562	chr1	174204831	174204838	174204833	+	RAMPAGE_only	51	79	173	7.431601	5.390749	chr1	174204635	174205029	LTR|ERVL-MaLR|MSTA	+	chr1	174220711	174231245	RABGAP1L|ENST00000487987.1	+	174220711,174231144	174221164,174231245	0.838150
K562	chr4	2037119	2037120	2037119	+	RAMPAGE_only	12	12	17	0.730273	3.500000	chr4	2036935	2037276	LTR|ERVL-MaLR|MSTA	+	chr4	2041992	2043970	C4orf48|ENST00000409248.8	+	2041992,2042326,2042735,2043860	2042068,2042484,2042824,2043970	0.647059
K562	chr5	79784566	79784567	79784566	+	RAMPAGE_only	7	7	9	0.386615	2.947703	chr5	79778884	79784938	LINE|L1|L1HS	-	chr5	79738141	79800240	CMYA5|ENST00000506603.5	+	79738141,79743826,79745221,79747090,79752675,79758752,79761810,79788970,79790969,79793436,79799369	79739403,79743922,79745455,79747113,79752794,79758902,79763209,79789104,79791069,79793610,79800240	0.555556
K562	chr1	75376210	75376230	75376210	-	RAMPAGE_only	5	7	18	0.773230	3.725481	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.555556
K562	chr4	126956685	126956700	126956699	-	High_confidence	8	9	26	1.116888	4.001629	chr4	126955322	126956872	LTR|ERV1|MER52A	+	chr4	126952343	126956773	MSTRG.21840.5	-	126952343,126956682	126956316,126956773	0.653846
K562	chr5	33441368	33441415	33441368	+	High_confidence	10	10	57	2.448562	5.131589	chr5	33441307	33441471	SINE|MIR|MIR3	-	chr5	33441380	33448730	TARS|ENST00000506040.1	+	33441380,33445323,33448540	33441864,33445404,33448730	0.877193
K562	chr5	140700445	140700452	140700445	+	High_confidence	1837	2067	4144	178.014764	5.231044	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.988900
K562	chr1	220090402	220090433	220090432	-	High_confidence	25	26	82	3.522493	5.178952	chr1	220090323	220090490	SINE|Alu|AluJr	-	chr1	220057483	220090462	BPNT1|ENST00000469520.6	-	220057483,220059685,220062756,220067301,220069383,220072849,220073966,220079726,220089685,220090286	220058992,220059791,220062954,220067393,220069432,220072957,220074071,220079854,220089951,220090462	0.987805
K562	chr7	75074355	75074356	75074355	-	High_confidence	9	9	9	0.386615	2.947703	chr7	75074129	75074360	SINE|Alu|AluSz	-	chr7	75063313	75074228	RCC1L|ENST00000615250.1	-	75063313,75064581,75066663,75070639,75073992	75063343,75064648,75066792,75070769,75074228	0.888889
K562	chr15	66354122	66354123	66354122	-	RAMPAGE_only	18	18	18	0.773230	3.350209	chr15	66354028	66355027	LINE|L2|L2a	+	chr15	66336383	66356685	TIPIN|ENST00000566524.5	-	66336383,66341149,66349059,66349314,66352128,66352814,66356638	66337181,66341356,66349123,66349437,66352207,66352955,66356685	1.000000
K562	chr7	150322656	150322680	150322667	+	High_confidence	135	143	328	14.089972	5.536419	chr7	150322211	150322830	LTR|ERV1|MER41B	+	chr7	150322663	150332721	MSTRG.26702.2	+	150322663,150325840,150328634	150323212,150326010,150332721	0.993902
K562	chr10	86981210	86981264	86981263	+	RAMPAGE_only	20	22	51	2.190819	4.576175	chr10	86981077	86981384	LTR|ERVL-MaLR|THE1C	+	chr10	86970740	87010126	AGAP11|ENST00000433214.2	+	86970740,86983139,86983853,86992246,86993361,86994823,86999448,87000318,87001635,87004324,87007654,87008354	86970915,86983240,86983941,86992469,86993552,86994903,86999591,87000434,87001736,87004360,87007706,87010126	0.568627
K562	chrX	16712958	16712979	16712958	-	High_confidence	8	8	14	0.601401	3.521641	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16587998	16712979	CTPS2|NM_019857.4	-	16587998,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712979	0.857143
K562	chr12	31959178	31959234	31959178	+	High_confidence	22	22	68	2.921092	4.509518	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31981060	KIAA1551|ENST00000540924.5	+	31959407,31960776,31980877	31959491,31960871,31981060	0.588235
K562	chr11	60185671	60185675	60185671	+	High_confidence	3	6	12	0.515487	3.418296	chr11	60185445	60185905	LTR|ERV1|LTR2	+	chr11	60185696	60308847	MSTRG.4565.1	+	60185696,60292224,60297196,60301000,60302558,60306099,60308106	60186171,60292384,60297325,60301057,60302717,60306201,60308847	0.750000
K562	chr22	19202369	19202410	19202390	-	RAMPAGE_only	3	3	12	0.515487	3.459432	chr22	19201804	19202472	LINE|L2|L2a	+	chr22	19179774	19207674	CLTCL1|ENST00000617926.4	-	19179774,19180198,19180730,19183389,19187557,19187980,19191303,19196265,19196488,19199733,19201328,19207517	19179969,19180238,19180806,19183611,19187728,19188091,19191435,19196415,19196656,19199841,19201493,19207674	0.833333
K562	chr11	66372479	66372480	66372479	-	High_confidence	6	6	9	0.386615	2.947703	chr11	66372296	66372448	DNA|hAT-Tip100|ORSL-2b	-	chr11	66362520	66372476	SLC29A2|NM_001300868.1	-	66362520,66364224,66365935,66366125,66366430,66367463,66367771,66368536,66369059,66369368,66371243,66371562,66372009,66372357	66363547,66364424,66366021,66366231,66366564,66367548,66367869,66368671,66369199,66369532,66371325,66371646,66372265,66372476	0.888889
K562	chr6	3195772	3195779	3195772	-	High_confidence	58	58	93	3.995022	4.577808	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.967742
K562	chr19	49675783	49675886	49675865	+	High_confidence	24	27	119	5.111910	5.580367	chr19	49675732	49676004	SINE|Alu|AluY	-	chr19	49675896	49688447	PRMT1|ENST00000532489.5	+	49675896,49676345,49680486,49681909,49682195,49683926,49684753,49684921,49686092,49686604,49688161	49676260,49676439,49680588,49682065,49682259,49684069,49684841,49685037,49686243,49686726,49688447	0.798319
K562	chr13	81340304	81340307	81340306	-	High_confidence	253	502	664	28.523601	4.754592	chr13	81339791	81341335	LTR|ERV1|LTR12C	-	chr13	81268011	81340300	MSTRG.7497.1	-	81268011,81330055,81335960,81339705	81269960,81330139,81336014,81340300	0.965361
K562	chr6	13472062	13472063	13472062	-	High_confidence	12	12	13	0.558444	2.918296	chr6	13471904	13472258	LTR|ERVL-MaLR|THE1A	-	chr6	13469267	13472063	GFOD1|NR_038459.1	-	13469267,13471980	13470630,13472063	0.615385
K562	chr11	38337023	38337048	38337023	-	High_confidence	2	2	7	0.300701	2.584963	chr11	38337000	38337314	SINE|Alu|AluY	+	chr11	38323834	38337214	MSTRG.4421.2	-	38323834,38325174,38336836	38324100,38325269,38337214	0.571429
K562	chr12	21395454	21395522	21395500	-	High_confidence	4	4	22	0.945059	3.754442	chr12	21395009	21401039	LINE|L1|L1PA2	+	chr12	21264599	21395437	SLCO1A2|NM_134431.3	-	21264599,21274468,21275359,21292163,21293944,21295596,21297403,21300347,21301170,21304426,21306881,21314548,21318781,21334587,21374398,21394905	21269767,21274586,21275424,21292336,21294110,21295792,21297568,21300569,21301269,21304573,21306988,21314681,21318923,21334709,21374525,21395437	0.954545
K562	chr3	197960763	197960791	197960763	+	High_confidence	6	6	25	1.073931	3.970176	chr3	197960678	197960861	DNA|hAT-Charlie|MER5A	-	chr3	197960256	198038667	LMLN|ENST00000332636.5	+	197960256,197974376,197975041,197976028,197976597,197980325,197983942,197985795,197990558,197996174,197999265,198019252,198021445,198024657,198035832,198038566	197960319,197974474,197975072,197976111,197976715,197980504,197984048,197985890,197990676,197996282,197999342,198019385,198021605,198024788,198036043,198038667	0.520000
K562	chr3	58842295	58842350	58842322	-	High_confidence	5	7	38	1.632375	4.093341	chr3	58842154	58848179	LINE|L1|L1PA2	+	chr3	58742103	58842625	MSTRG.19940.7	-	58742103,58753768,58806394,58831685,58842146	58742572,58753863,58806456,58831889,58842625	1.000000
K562	chr4	74331432	74331433	74331432	-	High_confidence	13	15	16	0.687316	3.506891	chr4	74331241	74331620	LTR|ERVL-MaLR|MSTA	-	chr4	74276634	74331393	MSTRG.21490.1	-	74276634,74330197,74331320	74278778,74330304,74331393	0.562500
K562	chr8	30812453	30812469	30812453	-	High_confidence	3	3	9	0.386615	2.725481	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	1.000000
K562	chr10	25466141	25466151	25466150	+	High_confidence	2	2	6	0.257743	2.584963	chr10	25466034	25466313	LTR|ERV1|LTR12F	+	chr10	25466189	25475949	GPR158|ENST00000482641.2	+	25466189,25466650,25475430	25466358,25466719,25475949	0.500000
K562	chr7	22705875	22705885	22705884	-	RAMPAGE_only	3	4	6	0.257743	2.584963	chr7	22703805	22707656	LTR|ERV1|HERVH-int	+	chr7	22492676	22632925	STEAP1B|ENST00000439708.1	-	22492676,22493323,22494771,22632809	22492729,22493836,22494886,22632925	0.666667
K562	chr8	107336430	107336549	107336500	-	High_confidence	438	522	2263	97.212213	5.629710	chr8	107336384	107336688	SINE|Alu|AluY	+	chr8	107249481	107336515	ANGPT1|NM_001314051.1	-	107249481,107264220,107284681,107293935,107303239,107321895,107336149,107336383	107252015,107264351,107284848,107294037,107303367,107322128,107336271,107336515	0.987627
K562	chr12	127060613	127060614	127060613	+	High_confidence	116	138	149	6.400627	5.115725	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060465	127165476	MSTRG.7028.2	+	127060465,127119553,127145711,127150201,127152089,127165251	127061334,127119678,127148273,127150312,127154344,127165476	0.959732
K562	chr19	58312242	58312243	58312242	+	RAMPAGE_only	14	14	14	0.601401	3.521641	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.928571
K562	chr19	5165585	5165623	5165585	-	High_confidence	34	35	140	6.014012	5.095514	chr19	5165394	5165784	LTR|ERV1|LTR12B	-	chr19	5157008	5165613	MSTRG.14001.1	-	5157008,5165364	5159104,5165613	0.914286
K562	chr5	163459041	163459053	163459041	-	RAMPAGE_only	4	4	10	0.429572	2.725481	chr5	163458959	163459144	SINE|MIR|MIR	-	chr5	163453579	163460137	NUDCD2|NM_145266.4	-	163453579,163456928,163457561,163459861	163454050,163457080,163457610,163460137	0.900000
K562	chr5	177689303	177689304	177689303	+	High_confidence	2388	2403	2440	104.815643	3.733631	chr5	177688053	177689723	LTR|ERV1|LTR12C	+	chr5	177689322	177716220	MSTRG.23569.2	+	177689322,177706705,177716005	177689740,177706885,177716220	0.979098
K562	chr5	102671340	102671362	102671340	-	High_confidence	3	3	7	0.300701	2.521641	chr5	102671229	102677260	LINE|L1|L1PA2	+	chr5	102608491	102671464	LINC00491|NR_103753.1	-	102608491,102636142,102671226	102609766,102636291,102671464	0.714286
K562	chr6	37425923	37425941	37425940	+	RAMPAGE_only	4	5	11	0.472530	2.913977	chr6	37425582	37426538	LINE|L1|L1M4c	-	chr6	37423942	37462061	MSTRG.24249.1	+	37423942,37432347,37435623,37443998,37446290,37450250,37451805,37453046,37453239,37458611,37459565,37461548,37461969	37424049,37432459,37435762,37444150,37446449,37450343,37451877,37453141,37453312,37458810,37459684,37461645,37462061	0.909091
K562	chr2	230342052	230342141	230342140	+	High_confidence	26	26	106	4.553466	5.783306	chr2	230337069	230342513	LINE|L1|L1HS	-	chr2	230342069	230372744	SP140L|ENST00000458341.1	+	230342069,230357804,230358963,230361613,230370907,230371597	230342173,230357967,230359132,230361697,230370967,230372744	0.773585
K562	chr6	143002914	143002933	143002914	-	RAMPAGE_only	4	4	23	0.988016	3.788755	chr6	143002775	143003116	LTR|ERVL-MaLR|THE1A	-	chr6	142967032	143021953	LINC01277|ENST00000446115.1	-	142967032,142986044,143021665	142967441,142986130,143021953	0.956522
K562	chr7	103274363	103274364	103274363	-	RAMPAGE_only	12	12	12	0.515487	3.188722	chr7	103274079	103275487	LTR|ERV1|LTR12C	-	chr7	103175132	103280219	DPY19L2P2|ENST00000439473.5	-	103175132,103184001,103185437,103195439,103197186,103198594,103210266,103212160,103214000,103216462,103225104,103233799,103234648,103237755,103238802,103240561,103242988,103254781,103257603,103271731,103274069,103277613,103279832	103175411,103184127,103185537,103195614,103197306,103198619,103210313,103212232,103214102,103216543,103225164,103233886,103234726,103237855,103238871,103240653,103243046,103254875,103257724,103271869,103275627,103277638,103280219	0.583333
K562	chr10	92830059	92830087	92830086	+	RAMPAGE_only	47	48	178	7.646387	5.389003	chr10	92829619	92830222	LTR|ERV1|MER41B	+	chr10	92831177	93059494	EXOC6|NM_001319194.1	+	92831177,92834712,92893348,92894793,92894929,92899598,92909426,92915757,92919981,92928338,92934143,92934309,92935813,92940726,92948273,92952272,92954629,92955579,92974052,92997473,93014193,93056923,93058222	92831357,92834824,92893520,92894841,92895020,92899644,92909631,92915913,92920050,92928422,92934190,92934430,92935885,92940824,92948379,92952382,92954741,92955714,92974232,92997615,93014267,93057036,93059494	0.691011
K562	chr16	54874162	54874165	54874162	-	High_confidence	81	81	178	7.646387	6.435581	chr16	54873972	54874354	LTR|ERVL-MaLR|MSTA	-	chr16	54851642	54874161	MSTRG.10983.5	-	54851642,54872404,54874054	54853568,54872527,54874161	0.589888
K562	chr13	67113615	67113626	67113625	-	RAMPAGE_only	76	82	183	7.861173	6.441487	chr13	67113554	67113825	SINE|Alu|AluY	-	chr13	66302833	67229818	PCDH9|ENST00000377865.6	-	66302833,66631209,66903503,67225404,67229779	66305028,66631411,66903605,67228575,67229818	0.519126
K562	chr8	2727150	2727171	2727170	+	High_confidence	4	5	9	0.386615	2.947703	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	1.000000
K562	chr9	20658556	20658598	20658597	+	High_confidence	3	3	15	0.644358	2.610577	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.533333
K562	chr3	101638679	101638701	101638689	+	RAMPAGE_only	4	7	16	0.687316	3.640224	chr3	101632599	101641508	LTR|ERV1|HERVS71-int	+	chr3	101632442	101642813	MSTRG.20150.2	+	101632442,101636953	101632805,101642813	0.937500
K562	chr10	101730047	101730139	101730060	-	High_confidence	102	104	489	21.006086	4.770691	chr10	101729855	101730163	SINE|Alu|AluY	+	chr10	101702173	101730118	MSTRG.3744.1	-	101702173,101729716	101702295,101730118	0.887526
K562	chr9	89479889	89479890	89479889	-	High_confidence	628	628	632	27.148970	5.070217	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89362238	89479890	SEMA4D|ENST00000537934.5	-	89362238,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89418362,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89418437,89455953,89479890	0.962025
K562	chr12	54323302	54323329	54323328	+	RAMPAGE_only	7	8	20	0.859145	3.721928	chr12	54323069	54323365	SINE|Alu|AluY	+	chr12	54325089	54351851	COPZ1|NR_073424.1	+	54325089,54340546,54342205,54345459,54347766,54347999,54349619,54350475	54325181,54340615,54342287,54345515,54347844,54348051,54349658,54351851	1.000000
K562	chr19	9140390	9140428	9140393	+	High_confidence	68	69	279	11.985067	6.054342	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.835125
K562	chr7	603495	603496	603495	+	High_confidence	5	5	7	0.300701	2.584963	chr7	603435	603558	LINE|L2|L2c	+	chr7	603397	608502	LOC101926963|NR_110055.1	+	603397,607864	603616,608502	0.857143
K562	chr1	188013619	188013660	188013650	+	High_confidence	5	5	26	1.116888	3.295466	chr1	188012480	188013856	LTR|ERV1|LTR12C	-	chr1	188013641	188144763	AL136372.2|ENST00000648838.1	+	188013641,188042891,188097138,188143896	188013999,188042987,188097218,188144763	0.807692
K562	chr1	18415005	18415007	18415006	-	High_confidence	106	181	237	10.180864	6.183782	chr1	18414970	18415103	LINE|L2|L2c	+	chr1	18393775	18414994	MSTRG.410.1	-	18393775,18414469	18395073,18414994	0.970464
K562	chr4	168536617	168536618	168536617	-	RAMPAGE_only	10	10	10	0.429572	3.321928	chr4	168536432	168536812	LTR|ERVL-MaLR|THE1D	-	chr4	168476066	168537786	DDX60L|ENST00000505150.5	-	168476066,168490357,168492665,168530560,168537640	168476120,168490450,168492885,168530702,168537786	0.500000
K562	chr2	96894200	96894248	96894231	-	High_confidence	20	20	62	2.663348	5.114763	chr2	96894203	96894258	SINE|MIR|MIRb	+	chr2	96876025	96895142	FAM178B|ENST00000470789.5	-	96876025,96877889,96878415,96893925,96895060	96876308,96878042,96878493,96894051,96895142	0.967742
K562	chr17	31762436	31762437	31762436	+	High_confidence	268	271	272	11.684367	5.996455	chr17	31762038	31762862	LTR|ERV1|LTR12	+	chr17	31762439	31769048	AC007923.1|ENST00000577970.1	+	31762439,31769006	31762902,31769048	0.915441
K562	chr7	102976126	102976167	102976166	+	RAMPAGE_only	4	5	21	0.902102	3.880180	chr7	102974408	102977040	LTR|ERV1|HERVH48-int	+	chr7	102973521	102988856	MSTRG.26218.4	+	102973521,102978380,102986110,102988032,102988374	102973771,102978520,102986286,102988232,102988856	0.666667
K562	chr11	16408800	16408821	16408800	-	High_confidence	4	4	9	0.386615	2.500000	chr11	16408706	16408831	SINE|Alu|FLAM_A	-	chr11	15966448	16408884	SOX6|NM_001145811.1	-	15966448,15986203,15988996,16014941,16046513,16049712,16055751,16097608,16111802,16183885,16186782,16234581,16318445,16341011,16408697	15973112,15986420,15989230,16015050,16046701,16049938,16055901,16097688,16111923,16183954,16186955,16234671,16318653,16341252,16408884	0.666667
K562	chr12	42442504	42442537	42442536	+	High_confidence	14	15	32	1.374631	4.542748	chr12	42442198	42442662	LTR|ERVK|LTR22E	+	chr12	42442648	42448623	PPHLN1|ENST00000624028.1	+	42442648	42448623	0.968750
K562	chr4	40200302	40200344	40200323	+	High_confidence	4	4	17	0.730273	3.875000	chr4	40200353	40200436	DNA|hAT-Charlie|MER5B	+	chr4	40200343	40243405	RHOH|ENST00000511121.5	+	40200343,40242713,40243177	40200565,40242834,40243405	0.529412
K562	chr22	36482025	36482026	36482025	-	High_confidence	5	5	7	0.300701	2.521641	chr22	36481702	36481993	SINE|Alu|AluSc	-	chr22	36467035	36482030	TXN2|ENST00000216185.6	-	36467035,36476732,36480574,36481563	36467917,36476856,36480837,36482030	1.000000
K562	chr15	65244454	65244455	65244454	-	RAMPAGE_only	9	10	11	0.472530	3.321928	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.909091
K562	chr5	95717623	95717657	95717623	+	High_confidence	6	6	18	0.773230	3.007196	chr5	95717605	95717747	LTR|ERVL|LTR33	-	chr5	95717632	95756093	RHOBTB3|ENST00000504949.1	+	95717632,95731858,95736888,95748332,95752238,95755395	95717765,95732084,95737075,95748487,95752350,95756093	0.888889
K562	chr4	141332616	141332617	141332616	-	High_confidence	10682	10694	10935	469.737318	4.369380	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.974486
K562	chr7	2242922	2242923	2242922	+	High_confidence	130	130	130	5.584440	4.753918	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
K562	chr16	12766455	12766456	12766455	-	RAMPAGE_only	9	9	9	0.386615	2.641604	chr16	12766318	12766626	LTR|ERVL-MaLR|THE1A	-	chr16	12659798	12803887	CPPED1|NM_018340.2	-	12659798,12704623,12781184,12803706	12665115,12705049,12781403,12803887	0.888889
K562	chr11	64242486	64242556	64242555	+	High_confidence	4	4	27	1.159845	4.056021	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.962963
K562	chr21	33945809	33945810	33945809	-	RAMPAGE_only	45	45	45	1.933075	4.205757	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
K562	chr1	40058865	40058888	40058870	+	RAMPAGE_only	2	2	7	0.300701	2.521641	chr1	40058793	40059037	SINE|MIR|MIRc	+	chr1	40040779	40066295	CAP1|ENST00000424977.1	+	40040779,40041428,40059336,40060066,40061734,40064226,40064473,40066214	40040801,40041493,40059458,40060170,40061812,40064370,40064559,40066295	1.000000
K562	chr16	72627719	72627766	72627739	-	High_confidence	7	7	37	1.589418	4.672140	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72523331	72627686	LINC01572|ENST00000563823.6	-	72523331,72540577,72555264,72561972,72570450,72617182,72627534	72523415,72540611,72555326,72562086,72570515,72617234,72627686	0.540541
K562	chr19	4470901	4470902	4470901	+	High_confidence	9	9	9	0.386615	2.503258	chr19	4470709	4471019	SINE|Alu|AluY	-	chr19	4470909	4502201	MSTRG.13982.1	+	4470909,4475274,4475444,4488675,4491565,4491763,4493702,4493981,4494165,4496301,4496918,4498305,4498813,4499490,4501190,4501910	4471024,4475351,4475583,4488876,4491682,4491835,4493862,4494057,4494475,4496405,4498031,4498376,4498915,4499704,4501317,4502201	0.555556
K562	chr9	112459210	112459230	112459222	+	RAMPAGE_only	5	5	13	0.558444	3.022055	chr9	112459247	112459316	LINE|L2|L2c	+	chr9	112380121	112472410	MSTRG.28615.4	+	112380121,112403994,112405623,112408906,112416840,112418859,112438430,112441698,112454012,112459448,112470431	112380507,112404158,112405722,112409021,112416944,112418958,112438625,112441770,112454162,112459577,112472410	0.923077
K562	chr1	14777682	14777730	14777682	-	High_confidence	872	878	2003	86.043333	7.035776	chr1	14777444	14777701	LINE|L2|L2a	+	chr1	14767288	14777748	MSTRG.338.2	-	14767288,14777533	14770172,14777748	0.635547
K562	chr15	74350789	74350790	74350789	+	High_confidence	16	17	23	0.988016	3.606937	chr15	74350554	74350908	LTR|ERV1|MER51B	+	chr15	74350767	74361903	PPIAP46|ENST00000564109.1	+	74350767,74354525,74356282,74361513	74350939,74354685,74356475,74361903	0.956522
K562	chr1	145410613	145410614	145410613	-	RAMPAGE_only	25	25	25	1.073931	3.753270	chr1	145410314	145410612	SINE|Alu|AluYa8	-	chr1	144547407	144547730	MSTRG.1655.1	-	144547407	144547730	0.960000
K562	chr7	8304026	8304094	8304026	+	High_confidence	12	12	72	3.092921	5.505037	chr7	8298113	8304140	LINE|L1|L1PA3	-	chr7	8303740	8341343	AC007128.2|ENST00000435967.1	+	8303740,8340382,8341016	8303796,8340556,8341343	0.611111
K562	chr10	26675878	26675932	26675878	-	High_confidence	3	3	20	0.859145	3.884184	chr10	26675712	26675886	SINE|Alu|AluYc	+	chr10	26661896	26675782	MSTRG.3069.2	-	26661896,26668406,26675693	26664392,26668494,26675782	1.000000
K562	chr4	8479400	8479430	8479417	+	RAMPAGE_only	8	8	41	1.761246	4.668170	chr4	8479317	8479868	DNA|TcMar-Tigger|Tigger3	-	chr4	8473515	8493531	TRMT44|ENST00000511366.2	+	8473515,8475771,8493265	8473644,8479533,8493531	0.780488
K562	chr1	45522855	45522890	45522858	-	High_confidence	33	33	66	2.835177	4.324603	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.818182
K562	chr1	17755330	17755366	17755334	+	High_confidence	11	19	69	2.964049	3.955185	chr1	17755152	17755695	LTR|ERVL|LTR41	+	chr1	17755312	17827063	ACTL8|NM_030812.2	+	17755312,17822984,17825766	17755504,17823356,17827063	0.985507
K562	chr9	37903557	37903558	37903557	-	High_confidence	9	9	9	0.386615	2.725481	chr9	37903533	37903620	SINE|MIR|MIR3	+	chr9	37887603	37904110	SLC25A51|ENST00000377716.6	-	37887603,37899828,37903530	37888592,37899950,37904110	0.777778
K562	chr22	50330653	50330680	50330679	+	High_confidence	24	32	170	7.302729	6.248969	chr22	50330424	50330745	SINE|Alu|AluY	+	chr22	50330662	50444371	MSTRG.19241.1	+	50330662,50372019,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439700,50439960,50440821,50443865,50444198	50330995,50372150,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50444371	0.888235
K562	chr6	79631256	79631329	79631278	+	High_confidence	70	70	478	20.533556	6.404964	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.970711
K562	chr14	22717970	22717978	22717977	-	RAMPAGE_only	7	8	14	0.601401	3.546594	chr14	22717974	22718126	LINE|L1|L1ME2	+	chr14	22701475	22766457	AL160314.2|ENST00000650620.1	-	22701475,22717095,22762024,22764122,22766423	22703011,22717217,22762143,22764242,22766457	0.928571
K562	chr6	10659545	10659559	10659558	+	High_confidence	3	3	7	0.300701	2.807355	chr6	10659300	10659575	SINE|Alu|AluY	+	chr6	10659497	10692860	AL358777.1|ENST00000649568.1	+	10659497,10672716,10684123,10685914,10686075,10689988	10659606,10672828,10684249,10685980,10686257,10692860	0.714286
K562	chr10	84279967	84279968	84279967	+	High_confidence	34	37	41	1.761246	4.481627	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279979	84294659	LINC00858|ENST00000415469.5	+	84279979,84288223,84288593,84288974,84291406,84293245	84280065,84288420,84288780,84289044,84292137,84294659	0.609756
K562	chr8	123179054	123179114	123179100	+	High_confidence	2	2	11	0.472530	2.845351	chr8	123179033	123179135	SINE|MIR|MIR3	+	chr8	123179046	123210079	FAM83A|NM_207006.2	+	123179046,123182025,123191802,123194023,123207156,123209425	123180229,123183336,123191970,123194148,123207416,123210079	0.727273
K562	chr14	55796687	55796688	55796687	-	High_confidence	335	359	420	18.042037	6.470151	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796688	LINC00520|ENST00000649892.1	-	55781136,55793367,55796602	55782581,55793456,55796688	0.692857
K562	chr4	154465176	154465201	154465176	-	RAMPAGE_only	16	16	35	1.503503	3.690117	chr4	154465028	154465386	LTR|ERVL-MaLR|MLT1F2	-	chr4	154259410	154458027	MSTRG.21987.4	-	154259410,154269899,154297850,154304668,154305096,154315747,154320378,154322330,154328092,154329522,154332477,154334867,154366209,154377252,154457440	154259756,154270013,154298708,154304878,154305231,154315987,154321222,154322488,154328192,154329710,154333494,154335104,154366441,154377444,154458027	0.942857
K562	chr7	8763014	8763053	8763048	+	High_confidence	39	60	268	11.512538	5.226023	chr7	8762898	8763358	LTR|ERVL|LTR16C	+	chr7	8762975	8764144	MSTRG.25388.1	+	8762975	8764144	0.906716
K562	chr19	48868613	48868666	48868613	-	High_confidence	832	890	4363	187.422398	7.460516	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.979830
K562	chr19	45450757	45450769	45450765	-	High_confidence	7	7	23	0.988016	4.436605	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.521739
K562	chr3	189596745	189596746	189596745	+	High_confidence	1067	1069	1076	46.221980	5.557701	chr3	189595942	189597160	LTR|ERV1|LTR12C	+	chr3	189596764	189631275	MSTRG.20857.1	+	189596764,189631136	189597238,189631275	0.982342
K562	chr7	107580245	107580267	107580264	+	High_confidence	1264	1265	6109	262.425723	6.258230	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.952693
K562	chr1	75678125	75678155	75678125	-	High_confidence	82	83	244	10.481564	5.520168	chr1	75677750	75683758	LINE|L1|L1PA3	+	chr1	75659707	75678124	MSTRG.1264.1	-	75659707,75677729	75659754,75678124	0.696721
K562	chr5	139503241	139503242	139503241	+	High_confidence	265	267	300	12.887169	5.987755	chr5	139502942	139503773	LTR|ERV1|LTR12	+	chr5	139503214	139515586	MSTRG.23247.1	+	139503214,139509859	139503813,139515586	0.973333
K562	chr1	91906296	91906326	91906304	-	High_confidence	28	30	144	6.185841	5.888448	chr1	91906024	91906325	SINE|Alu|AluSc	+	chr1	91682429	91906315	MSTRG.1363.4	-	91682429,91695671,91698088,91708662,91712242,91716235,91716567,91719311,91719892,91721954,91727658,91729804,91734775,91758612,91797286,91861470,91899636,91905825	91683857,91695779,91698130,91708783,91712542,91716394,91716708,91719464,91720230,91722144,91727806,91729973,91734959,91758750,91797471,91861644,91899697,91906315	0.979167
K562	chr3	129439733	129439779	129439754	-	High_confidence	3	3	13	0.558444	3.392747	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129437046	129439937	MBD4|ENST00000505883.1	-	129437046,129437807,129439729	129437308,129437950,129439937	0.615385
K562	chr7	119950824	119950825	119950824	-	High_confidence	1077	1081	1340	57.562689	4.822354	chr7	119950307	119952074	LTR|ERV1|LTR12C	-	chr7	119761546	119950833	MSTRG.26358.4	-	119761546,119800815,119944020,119950281	119764776,119800874,119944107,119950833	0.982836
K562	chr11	12989543	12989546	12989543	-	High_confidence	708	933	1775	76.249085	7.310448	chr11	12989406	12989730	LTR|ERVL-MaLR|THE1D	-	chr11	12961841	12989547	LINC00958|ENST00000527945.2	-	12961841,12965107,12989455	12962763,12965214,12989547	0.553803
K562	chr16	19487898	19487901	19487898	-	High_confidence	85	87	158	6.787242	5.065435	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.854430
K562	chr5	85647766	85647767	85647766	-	High_confidence	5	5	8	0.343658	2.807355	chr5	85647706	85648160	LTR|ERV1|LTR71A	-	chr5	85619348	85647863	MSTRG.22764.1	-	85619348,85629687,85633293,85635203,85647484	85620193,85629814,85633429,85635252,85647863	0.500000
K562	chr17	7584862	7584863	7584862	+	High_confidence	64	64	73	3.135878	5.036007	chr17	7584709	7585017	SINE|Alu|AluSq2	+	chr17	7583884	7587643	MPDU1|ENST00000576272.5	+	7583884,7585731,7585950,7586691,7586898,7587160,7587425	7583965,7585797,7586078,7586777,7587017,7587271,7587643	0.506849
K562	chr15	39420914	39420951	39420940	-	High_confidence	3	3	10	0.429572	3.121928	chr15	39420570	39426588	LINE|L1|L1PA2	+	chr15	39299338	39420951	AC013652.1|ENST00000559318.1	-	39299338,39420543	39299482,39420951	0.600000
K562	chr5	19142319	19142333	19142319	-	High_confidence	108	108	216	9.278762	5.801092	chr5	19142064	19143334	LTR|ERV1|LTR12E	-	chr5	18965860	19142346	AC106744.1|ENST00000504827.1	-	18965860,19142057	18966231,19142346	0.768519
K562	chr18	77993722	77993727	77993726	-	High_confidence	201	203	314	13.488570	7.364268	chr18	77993549	77993903	LTR|ERVL-MaLR|THE1B	-	chr18	77971813	77993719	MSTRG.13762.6	-	77971813,77979494,77982519,77982871,77989041,77990092,77993634	77976675,77979637,77982713,77986611,77989914,77990174,77993719	0.519108
K562	chr18	8913998	8914137	8913998	+	High_confidence	8880	9067	12851	552.043372	5.094302	chr18	8913646	8914109	LTR|ERV1|LTR2	+	chr18	8913965	8923981	MSTRG.13389.1	+	8913965,8916790	8914375,8923981	0.777994
K562	chr2	142935813	142935857	142935820	+	High_confidence	21	21	78	3.350664	5.621627	chr2	142931426	142936889	LTR|ERV1|HERVH48-int	-	chr2	142935837	142936188	MSTRG.16648.1	+	142935837	142936188	0.948718
K562	chr7	8303752	8303764	8303763	+	High_confidence	7	7	13	0.558444	3.022055	chr7	8298113	8304140	LINE|L1|L1PA3	-	chr7	8303753	8340523	AC007128.2|ENST00000606016.1	+	8303753,8340382	8304155,8340523	0.923077
K562	chr3	179325272	179325273	179325272	+	High_confidence	9	9	9	0.386615	2.725481	chr3	179325011	179325319	SINE|Alu|AluSp	-	chr3	179325152	179333829	ZNF639|ENST00000466264.5	+	179325152,179327560,179328282,179329617,179332988,179333268	179325322,179327631,179328351,179329728,179333123,179333829	1.000000
K562	chr4	80125206	80125253	80125252	-	High_confidence	27	27	57	2.448562	5.280395	chr4	80123658	80125425	LINE|L1|L1M1	+	chr4	80069435	80125454	ANTXR2|ENST00000506286.1	-	80069435,80071582,80097499,80097736,80104462,80121147,80125385	80069507,80071654,80097629,80097961,80104537,80121277,80125454	0.596491
K562	chr2	240022172	240022182	240022181	-	RAMPAGE_only	13	13	30	1.288717	2.753306	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.966667
K562	chr10	9878062	9878095	9878094	-	High_confidence	14	15	63	2.706306	4.580244	chr10	9877868	9878570	LTR|ERV1|MER50B	+	chr10	9776588	9878080	MSTRG.2928.3	-	9776588,9786171,9790673,9877747	9776634,9786265,9790788,9878080	0.825397
K562	chr17	4143199	4143244	4143199	+	High_confidence	72	75	190	8.161874	5.386537	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.984211
K562	chr6	49619207	49619227	49619208	-	RAMPAGE_only	5	8	13	0.558444	3.022055	chr6	49618802	49619167	LTR|ERVL-MaLR|MLT1A0	-	chr6	49605174	49636839	RHAG|ENST00000646272.1	-	49605174,49606728,49607149,49611023,49612396,49614686,49615623,49618067,49619178,49636655	49605830,49606921,49607220,49611145,49612534,49614853,49615771,49618218,49619362,49636839	0.923077
K562	chr5	181247598	181247599	181247598	-	High_confidence	9	9	11	0.472530	3.277613	chr5	181247404	181247700	SINE|Alu|AluY	+	chr5	181238119	181247576	RACK1|ENST00000510199.5	-	181238119,181239066,181239486,181241491,181242173,181247123	181238239,181239177,181239582,181241639,181242345,181247576	1.000000
K562	chr11	67619986	67619987	67619986	+	High_confidence	2273	2277	2317	99.531904	4.580868	chr11	67618852	67620425	LTR|ERV1|LTR12C	+	chr11	67619993	67630233	MSTRG.4834.1	+	67619993,67626053	67620536,67630233	0.981010
K562	chr3	60277556	60277576	60277564	-	RAMPAGE_only	72	111	323	13.875186	4.823274	chr3	60277246	60277886	LTR|ERV1|LTR9D	+	chr3	59747277	60081127	FHIT|NM_001320901.1	-	59747277,59922345,60011370,60014006,60014205,60070858,60080790	59752321,59922414,60011400,60014075,60014264,60070939,60081127	0.801858
K562	chr19	571299	571302	571301	+	High_confidence	7	12	13	0.558444	2.855389	chr19	571082	571344	LTR|ERV1|LTR10B	+	chr19	571309	583493	BSG|ENST00000346916.8	+	571309,580378,580645,581314,582305,582513,582749	571579,580461,580782,581591,582330,582582,583493	0.615385
K562	chr7	8303683	8303686	8303683	+	High_confidence	3	6	12	0.515487	3.277613	chr7	8298113	8304140	LINE|L1|L1PA3	-	chr7	8303753	8340523	AC007128.2|ENST00000606016.1	+	8303753,8340382	8304155,8340523	0.833333
K562	chr1	69551830	69551889	69551877	+	High_confidence	34	34	175	7.517515	6.145729	chr1	69551506	69552150	LTR|ERV1|LTR9	-	chr1	69551856	69565766	MSTRG.1211.2	+	69551856,69555417,69556935,69557779,69563606	69551943,69555465,69556993,69559819,69565766	0.588571
K562	chr7	87039797	87039870	87039869	-	High_confidence	13	13	65	2.792220	5.388759	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87040657	MSTRG.25993.7	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040657	0.938462
K562	chr5	12574736	12574787	12574736	-	High_confidence	13	14	49	2.104904	4.162439	chr5	12573943	12575033	LTR|ERV1|LTR12C	-	chr5	12553889	12574637	AC106771.1|ENST00000502209.2	-	12553889,12571815,12574503	12554038,12571904,12574637	0.979592
K562	chr7	6590236	6590270	6590236	+	High_confidence	3	3	14	0.601401	3.664498	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.714286
K562	chr8	8244546	8244599	8244581	-	High_confidence	62	82	256	10.997051	6.163593	chr8	8244525	8244922	LTR|ERV1|MER48	+	chr8	8231609	8244588	MSTRG.26858.1	-	8231609,8238190,8239494,8240428,8241321,8242786,8244459	8236802,8238301,8239554,8240549,8241400,8242926,8244588	0.613281
K562	chr13	22040971	22040972	22040971	+	High_confidence	11	12	13	0.558444	3.188722	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.615385
K562	chr18	976418	976507	976418	+	High_confidence	24	31	133	5.713312	4.952527	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976588	1159391	AP005328.1|ENST00000577719.5	+	976588,1133842,1137813,1159178	976895,1133952,1137864,1159391	0.842105
K562	chr3	58842222	58842265	58842264	-	High_confidence	6	7	20	0.859145	3.721928	chr3	58842154	58848179	LINE|L1|L1PA2	+	chr3	58742103	58842625	MSTRG.19940.7	-	58742103,58753768,58806394,58831685,58842146	58742572,58753863,58806456,58831889,58842625	0.900000
K562	chr19	15829094	15829095	15829094	+	High_confidence	4046	4163	4798	206.108793	6.857658	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	0.952272
K562	chrX	49148475	49148476	49148475	-	RAMPAGE_only	7	7	8	0.343658	2.521641	chrX	49148260	49148648	LTR|ERV1|HERVE-int	-	chrX	49138641	49150577	MSTRG.29376.3	-	49138641,49148383,49150432	49145519,49149165,49150577	0.750000
K562	chr11	66438593	66438598	66438593	-	High_confidence	3	3	8	0.343658	2.521641	chr11	66438453	66438566	SINE|MIR|MIR	-	chr11	66435837	66438826	MRPL11|ENST00000534488.5	-	66435837,66437103,66437349,66438163,66438631	66436112,66437263,66437435,66438259,66438826	0.875000
K562	chr17	70128879	70128880	70128879	-	High_confidence	677	677	741	31.831308	5.847959	chr17	70128761	70129144	LTR|ERV1|MER48	-	chr17	70092645	70128859	MSTRG.12958.4	-	70092645,70125160,70128642	70099712,70128157,70128859	0.757085
K562	chr6	152875814	152875858	152875814	-	High_confidence	3	3	13	0.558444	3.392747	chr6	152875793	152876094	SINE|Alu|AluY	+	chr6	152758006	152875974	MSTRG.25133.1	-	152758006,152759979,152831052,152831853,152875706	152758790,152760084,152831268,152831936,152875974	0.846154
K562	chr1	223935755	223935756	223935755	-	RAMPAGE_only	48	54	58	2.491519	4.734967	chr1	223935575	223935956	LTR|ERVL-MaLR|THE1C	-	chr1	223779892	223845972	TP53BP2|NM_005426.2	-	223779892,223784114,223789007,223792388,223793302,223795814,223798214,223799898,223800699,223802115,223802730,223803270,223804173,223806845,223810430,223814239,223818205,223821219,223845653	223780894,223784314,223789174,223792522,223793440,223796590,223798677,223800047,223800810,223802344,223802895,223803452,223804348,223806947,223810513,223814353,223818337,223821367,223845972	0.517241
K562	chr19	18417165	18417168	18417167	+	RAMPAGE_only	11	14	19	0.816187	3.572431	chr19	18417203	18417319	LINE|L2|L2c	+	chr19	18418863	18432214	SSBP4|ENST00000597724.6	+	18418863,18427350,18427751,18427897,18430840,18431646,18431792,18431999,18432146	18419149,18427423,18427813,18427982,18430930,18431706,18431862,18432070,18432214	0.684211
K562	chr15	101960205	101960218	101960205	+	High_confidence	4	4	11	0.472530	2.721928	chr15	101960113	101960268	LTR|ERVL-MaLR|MLT1A	-	chr15	101960812	101976605	WASH3P|NR_003659.2	+	101960812,101966069,101972595,101972900,101973219,101973591,101973904,101974194,101975012,101975923,101976132	101961641,101966223,101972694,101973047,101973352,101973727,101974106,101974353,101975165,101975992,101976605	0.818182
K562	chrX	135893349	135893399	135893381	-	High_confidence	128	135	252	10.825222	5.452225	chrX	135893277	135893550	LTR|ERVL|LTR41	-	chrX	135880751	135893428	CT45A10|NM_001291530.1	-	135880751,135882535,135883007,135885175,135893327	135881315,135882629,135883256,135885350,135893428	0.980159
K562	chr4	165743197	165743239	165743225	-	High_confidence	7	7	17	0.730273	3.625000	chr4	165743039	165743351	SINE|Alu|AluY	+	chr4	165730778	165743071	LOC101928131|NR_121677.1	-	165730778,165734672,165738330,165743018	165731684,165734903,165738695,165743071	0.529412
K562	chr1	153967484	153967512	153967497	+	High_confidence	25	28	107	4.596424	5.375718	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.906542
K562	chr3	149284778	149284779	149284778	+	High_confidence	28	28	28	1.202802	4.137538	chr3	149283837	149285090	LTR|ERV1|LTR12C	+	chr3	149284781	149333653	AC093001.1|ENST00000489011.1	+	149284781,149333503	149285182,149333653	0.750000
K562	chr4	84299155	84299169	84299155	-	High_confidence	1	1	7	0.300701	2.584963	chr4	84298780	84304810	LINE|L1|L1PA2	+	chr4	83968081	84299169	LOC101928978|NR_125909.1	-	83968081,84012054,84148046,84149218,84243110,84284205,84286668,84293219,84299123	83970110,84012119,84148130,84149256,84243216,84284326,84286827,84293409,84299169	0.571429
K562	chr18	9191939	9191981	9191972	+	RAMPAGE_only	12	12	39	1.675332	4.701944	chr18	9191625	9192172	LTR|ERVL|MER74A	+	chr18	9182385	9254273	ANKRD12|ENST00000546007.6	+	9182385,9195550,9208656,9211583,9216757,9221851,9254210	9182519,9195698,9208797,9211784,9216900,9221999,9254273	0.589744
K562	chr11	123061212	123061328	123061327	-	High_confidence	96	96	212	9.106933	4.628661	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.971698
K562	chr2	75871923	75871936	75871935	+	High_confidence	30	30	56	2.405605	5.370538	chr2	75871689	75872461	LTR|ERV1|LTR17	+	chr2	75871923	76130015	MSTRG.16092.2	+	75871923,76082624,76129527,76129735	75872492,76082692,76129637,76130015	0.910714
K562	chr6	67887224	67887253	67887252	-	RAMPAGE_only	16	16	42	1.804204	4.558519	chr6	67881436	67888662	LTR|ERV1|HERVH-int	-	chr6	67876872	67889154	MSTRG.24450.2	-	67876872,67886967,67888910	67883876,67887398,67889154	0.738095
K562	chr10	69315786	69315822	69315818	+	High_confidence	469	628	2481	106.576889	7.624257	chr10	69315806	69315937	SINE|MIR|MIRc	+	chr10	69315784	69401443	HK1|ENST00000298649.8	+	69315784,69343826,69359896,69364782,69368535,69369236,69369440,69376933,69379861,69382486,69384332,69384795,69386322,69389196,69392124,69394949,69398594,69400990	69316014,69343989,69360045,69364902,69368631,69369336,69369624,69377089,69380095,69382791,69384481,69384915,69386418,69389296,69392308,69395105,69398828,69401443	0.520758
K562	chr11	119046587	119046589	119046588	-	RAMPAGE_only	6	9	11	0.472530	2.646439	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119044293	119057024	MSTRG.5350.5	-	119044293,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049017,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119057019	119045654,119045834,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049203,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119057024	0.909091
K562	chr2	32629535	32629542	32629535	+	RAMPAGE_only	4	4	8	0.343658	2.750000	chr2	32629432	32629738	SINE|Alu|AluY	-	chr2	32628095	32820995	TTC27|ENST00000647819.1	+	32628095,32630522,32633875,32640269,32650130,32664302,32666634,32672271,32676119,32678452,32678855,32702806,32733827,32736693,32758291,32777881,32782625,32786983,32811023,32812503,32817456,32820815	32628380,32630700,32634005,32640410,32650233,32664467,32666768,32672384,32676259,32678570,32678922,32702920,32733923,32736816,32758519,32777980,32782678,32787149,32811221,32812615,32817557,32820995	0.625000
K562	chr4	76234500	76234536	76234518	-	High_confidence	14	14	55	2.362648	5.094483	chr4	76234334	76234657	LTR|ERV1|MER61A	-	chr4	76158759	76234536	SCARB2|ENST00000638295.1	-	76158759,76163224,76166249,76168402,76169866,76174143,76175790,76176436,76179516,76180953,76195706,76234302	76161751,76163383,76166301,76168476,76169985,76174313,76175910,76176528,76179705,76181101,76195864,76234536	0.581818
K562	chr8	66955118	66955124	66955118	-	High_confidence	6	7	15	0.644358	3.324863	chr8	66949103	66955119	LINE|L1|L1PA2	-	chr8	66947589	66955117	TCF24|ENST00000566129.1	-	66947589,66954978	66948164,66955117	0.733333
K562	chr2	107748281	107748302	107748291	-	RAMPAGE_only	30	51	125	5.369654	6.261422	chr2	107748198	107748521	SINE|Alu|AluY	-	chr2	107677880	107746944	MSTRG.16349.2	-	107677880,107693043,107698848,107703249,107746545	107678651,107693155,107699067,107703320,107746944	0.592000
K562	chr12	93773408	93773438	93773408	+	High_confidence	37	48	178	7.646387	6.429133	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93773402	93850667	MSTRG.6593.10	+	93773402,93849969	93773486,93850667	0.629213
K562	chr22	36481305	36481353	36481334	-	High_confidence	24	28	108	4.639381	4.792404	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.648148
K562	chr11	94640101	94640107	94640103	+	RAMPAGE_only	103	144	233	10.009035	5.431723	chr11	94639948	94640291	LTR|ERV1|MER61A	+	chr11	94638037	94640833	AP000943.1|ENST00000438416.2	+	94638037,94638693,94639561,94639825,94640213,94640582	94638069,94638767,94639735,94639897,94640322,94640833	0.669528
K562	chr6	109140442	109140443	109140442	+	RAMPAGE_only	5	5	7	0.300701	2.807355	chr6	109140400	109140695	SINE|Alu|AluSg	-	chr6	109129303	109163912	CEP57L1|NM_173830.4	+	109129303,109145218,109146757,109150117,109153832,109155229,109155790,109159024,109159268,109160571,109162748	109129492,109145381,109146937,109150239,109153949,109155307,109155877,109159102,109159462,109160716,109163912	0.571429
K562	chr8	58643444	58643472	58643464	-	RAMPAGE_only	12	12	56	2.405605	3.540954	chr8	58643359	58643464	LINE|L2|L2c	+	chr8	58631427	58659214	NSMAF|ENST00000519871.1	-	58631427,58635188,58635304,58635467,58642983,58659194	58631546,58635225,58635372,58635546,58643073,58659214	0.964286
K562	chr14	23636366	23636367	23636366	+	High_confidence	218	223	255	10.954094	5.891871	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	0.972549
K562	chr2	6918666	6918680	6918666	-	High_confidence	5	5	11	0.472530	3.459432	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6916850	6918663	RNF144A-AS1|ENST00000439208.1	-	6916850,6918280	6917224,6918663	1.000000
K562	chr5	150776158	150776159	150776158	-	RAMPAGE_only	4	4	7	0.300701	2.807355	chr5	150775761	150776351	DNA|TcMar-Tigger|MER6A	-	chr5	150708439	150759109	DCTN4|ENST00000447998.6	-	150708439,150715564,150718275,150719715,150722906,150730630,150731043,150731415,150733367,150742113,150753478,150756416,150758858	150711362,150715662,150718383,150719770,150722980,150730740,150731156,150731489,150733475,150742157,150753657,150756487,150759109	1.000000
K562	chr13	107913676	107913688	107913687	-	High_confidence	87	87	134	5.756269	5.990879	chr13	107913491	107913798	SINE|Alu|AluYk3	+	chr13	107163509	107913667	MSTRG.7645.1	-	107163509,107210583,107865681,107913489	107170786,107210755,107866448,107913667	0.701493
K562	chr2	231985944	231985959	231985944	+	RAMPAGE_only	4	4	10	0.429572	2.921928	chr2	231985784	231986350	LTR|ERVL|MLT2B3	+	chr2	231961707	232087552	DIS3L2|ENST00000441279.5	+	231961707,232014847,232015513,232024276,232029978,232087486	231961765,232014979,232015671,232024330,232030080,232087552	0.700000
K562	chr5	104079977	104080007	104080006	+	High_confidence	8	8	19	0.816187	3.725481	chr5	104074362	104080381	LINE|L1|L1PA2	-	chr5	104079918	104105874	MSTRG.22926.2	+	104079918,104080907,104081879,104104173	104080124,104081041,104081947,104105874	0.736842
K562	chr15	95638315	95638329	95638328	+	High_confidence	450	777	1682	72.254062	6.972739	chr15	95638216	95638514	SINE|Alu|AluYm1	-	chr15	95638348	95825356	AC015574.1|ENST00000616588.4	+	95638348,95730363,95810078,95825188	95638519,95730442,95810116,95825356	0.589774
K562	chr1	196933682	196933725	196933724	-	High_confidence	19	20	118	5.068953	5.884064	chr1	196933509	196934428	LTR|ERV1|LTR12C	+	chr1	196909614	196933717	MSTRG.2391.2	-	196909614,196922894,196933456	196910148,196923011,196933717	0.728814
K562	chr3	101634546	101634567	101634546	-	RAMPAGE_only	5	7	14	0.601401	3.700440	chr3	101632599	101641508	LTR|ERV1|HERVS71-int	+	chr3	101620899	101638949	MSTRG.20148.1	-	101620899,101634341,101636696,101637169,101637574	101626411,101635284,101636774,101637238,101638949	0.571429
K562	chr19	571725	571792	571754	-	High_confidence	125	140	397	17.054021	6.330937	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.954660
K562	chr3	65533254	65533281	65533254	-	High_confidence	21	21	32	1.374631	4.215061	chr3	65533230	65533329	LINE|L2|L2b	-	chr3	65470366	65532895	MAGI1|ENST00000496734.1	-	65470366,65478591,65493511,65532751	65470484,65478798,65493631,65532895	0.656250
K562	chr19	34860385	34860424	34860423	-	High_confidence	18	18	106	4.553466	3.709908	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.905660
K562	chr15	39421008	39421029	39421020	-	High_confidence	3	4	10	0.429572	2.521928	chr15	39420570	39426588	LINE|L1|L1PA2	+	chr15	39299338	39420951	AC013652.1|ENST00000559318.1	-	39299338,39420543	39299482,39420951	0.700000
K562	chrX	65999750	65999806	65999781	+	High_confidence	2207	2218	9351	401.693065	6.883701	chrX	65999660	65999781	SINE|MIR|MIR3	-	chrX	65999750	66001421	MSTRG.29481.1	+	65999750,66000397	65999957,66001421	0.986205
K562	chr3	118914619	118914642	118914619	-	RAMPAGE_only	5	5	14	0.601401	3.182006	chr3	118914243	118920271	LINE|L1|L1PA2	+	chr3	118902390	119034728	IGSF11|ENST00000491903.1	-	118902390,118904647,118905595,118926100,118928508,118930111,119034530	118902961,118904714,118905718,118926256,118928716,118930275,119034728	0.642857
K562	chr6	30873175	30873196	30873175	+	RAMPAGE_only	5	5	11	0.472530	3.121928	chr6	30872963	30873340	LTR|ERV1|LTR8A	+	chr6	30880848	30900154	DDR1|ENST00000324771.12	+	30880848,30884537,30885624,30888687,30888907,30889201,30890972,30891379,30892001,30892295,30893067,30893271,30894505,30895403,30896620,30897013,30897378,30898072,30898887,30899155	30881125,30884710,30885680,30888814,30889010,30889430,30891120,30891479,30892188,30892542,30893163,30893423,30894671,30895514,30896865,30897141,30897597,30898307,30899037,30900154	0.545455
K562	chr18	2833064	2833078	2833077	-	High_confidence	4	4	8	0.343658	3.000000	chr18	2832880	2833175	SINE|Alu|AluY	+	chr18	2822354	2833065	AP001011.1|ENST00000581172.1	-	2822354,2832615	2822571,2833065	0.875000
K562	chr1	209701315	209701316	209701315	-	RAMPAGE_only	8	9	12	0.515487	3.459432	chr1	209701157	209701511	LTR|ERVL-MaLR|THE1A	-	chr1	209661358	209724125	LOC101930114|NR_134509.1	-	209661358,209662910,209724029	209661567,209663061,209724125	0.583333
K562	chr13	110965688	110965704	110965703	+	High_confidence	41	41	89	3.823194	5.478969	chr13	110965259	110965842	LTR|ERV1|LTR10F	+	chr13	110965703	110990579	LINC00431|ENST00000440735.2	+	110965703,110976926,110983291,110989979	110966119,110976978,110983412,110990579	0.707865
K562	chr13	50185872	50185953	50185872	+	High_confidence	17	25	134	5.756269	6.099044	chr13	50180295	50186330	LINE|L1|L1PA2	-	chr13	50185879	50528064	DLEU1|ENST00000485007.5	+	50185879,50390197,50415088,50433412,50527865	50186070,50390291,50415202,50433550,50528064	0.634328
K562	chr7	53811930	53811942	53811930	-	High_confidence	249	250	662	28.437687	6.917429	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.891239
K562	chr7	121062862	121062867	121062866	+	High_confidence	20	23	30	1.288717	4.148394	chr7	121062672	121063032	LTR|ERVL-MaLR|THE1B	+	chr7	121062764	121261918	CPED1|ENST00000423795.5	+	121062764,121064237,121097698,121099925,121124330,121125819,121127089,121128381,121130124,121133822,121136039,121140826,121141972,121236713,121244201,121261631	121062896,121064313,121097831,121100094,121124473,121125892,121127257,121128486,121130294,121133893,121136090,121141013,121142141,121236831,121244338,121261918	0.700000
K562	chr2	151704888	151704889	151704888	-	RAMPAGE_only	42	43	45	1.933075	4.963746	chr2	151698868	151704889	LINE|L1|L1PA2	-	chr2	151689197	151706931	NEB|ENST00000489048.1	-	151689197,151691863,151692058,151692260,151694322,151694521,151695577,151696636,151697147,151697349,151697543,151706880	151690825,151691968,151692166,151692362,151694436,151694629,151695682,151696735,151697252,151697457,151697648,151706931	0.777778
K562	chr8	27498310	27498332	27498310	+	RAMPAGE_only	2	2	9	0.386615	2.500000	chr8	27494311	27498372	LTR|ERV1|HERV9-int	-	chr8	27491209	27522509	EPHX2|ENST00000521684.1	+	27491209,27500925,27503603,27504955,27511835,27515717,27516319,27518037,27520882,27522422	27491309,27501010,27503763,27505146,27511910,27515813,27516398,27518072,27520909,27522509	0.777778
K562	chr4	55636741	55636754	55636741	-	High_confidence	6	6	10	0.429572	2.947703	chr4	55636701	55636774	LINE|L2|L2a	+	chr4	55595228	55636698	NMU|NR_120489.1	-	55595228,55599141,55600521,55605274,55607436,55609119,55616337,55630401,55636543	55595411,55599181,55600575,55605349,55607466,55609179,55616385,55630460,55636698	0.800000
K562	chr6	32130979	32131000	32130979	-	High_confidence	11	11	39	1.675332	4.303867	chr6	32130741	32130983	SINE|Alu|AluSq2	+	chr6	32128706	32131660	MSTRG.24124.1	-	32128706,32130924	32129854,32131660	0.948718
K562	chr7	26638355	26638356	26638355	+	High_confidence	23	23	32	1.374631	4.476410	chr7	26638161	26638531	LTR|ERVL-MaLR|THE1C	+	chr7	26638456	26647305	C7orf71|ENST00000614528.3	+	26638456,26640695,26646299	26639344,26640764,26647305	0.718750
K562	chr8	30729137	30729186	30729172	+	RAMPAGE_only	3	3	14	0.601401	3.180833	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30732246	30766470	UBXN8|ENST00000620074.4	+	30732246,30744327,30751395,30753034,30754664,30756764,30760887,30763272,30766226	30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763347,30766470	0.785714
K562	chr3	101632603	101632645	101632603	+	High_confidence	5	5	34	1.460546	4.635007	chr3	101632599	101641508	LTR|ERV1|HERVS71-int	+	chr3	101632442	101642813	MSTRG.20150.2	+	101632442,101636953	101632805,101642813	0.882353
K562	chr14	73325800	73325817	73325800	-	RAMPAGE_only	6	6	14	0.601401	3.180833	chr14	73325641	73326344	LINE|L1|L1MD2	+	chr14	73275217	73299375	NUMB|ENST00000556772.5	-	73275217,73279280,73282358,73284080,73287109,73292733,73297210	73277293,73279424,73282505,73284374,73287314,73292874,73299375	0.928571
K562	chr19	15828958	15828963	15828958	+	High_confidence	5	5	9	0.386615	3.169925	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15828957	15835415	UCA1|ENST00000642256.1	+	15828957,15831207,15834501	15829338,15831356,15835415	1.000000
K562	chr11	105515986	105516000	105515999	-	High_confidence	117	119	179	7.689344	5.717545	chr11	105515802	105516104	SINE|Alu|AluY	+	chr11	105137720	105516002	CARD18|ENST00000649856.1	-	105137720,105138811,105156108,105160264,105259641,105268262,105458238,105515481	105138098,105139078,105156217,105160356,105259685,105268311,105458453,105516002	0.944134
K562	chr22	49657461	49657516	49657515	-	High_confidence	67	95	304	13.058998	6.336833	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49414523	49657504	C22orf34|ENST00000414287.5	-	49414523,49416601,49416814,49440875,49657404	49416035,49416735,49416928,49441212,49657504	0.694079
K562	chr8	129574929	129575020	129575014	-	High_confidence	4070	4200	8688	373.212421	7.795080	chr8	129574737	129575117	LINE|L2|L2c	+	chr8	129352428	129574991	MSTRG.27766.13	-	129352428,129370306,129388044,129399530,129574638	129352980,129370377,129388118,129399684,129574991	0.915516
K562	chr7	12594748	12594794	12594786	+	RAMPAGE_only	4	4	22	0.945059	3.820889	chr7	12593525	12595108	LTR|ERV1|HERVFH21-int	-	chr7	12589522	12653603	SCIN|NM_033128.3	+	12589522,12604513,12622800,12625009,12625761,12626583,12629100,12636044,12640346,12644137,12644583,12649466,12651840,12652587	12589573,12604663,12622893,12625142,12625850,12626799,12629222,12636135,12640517,12644315,12644705,12649544,12651901,12653603	0.954545
K562	chr1	175107651	175107652	175107651	-	High_confidence	5217	5226	5250	225.525461	5.790073	chr1	175107104	175109022	LTR|ERV1|LTR12C	-	chr1	175100720	175108130	MSTRG.2253.1	-	175100720,175107020	175103105,175108130	0.993143
K562	chr7	87040212	87040223	87040214	-	High_confidence	75	166	337	14.476587	6.112073	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87040657	MSTRG.25993.7	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040657	0.955490
K562	chr2	180692008	180692009	180692008	+	High_confidence	2544	2551	2642	113.493004	5.283668	chr2	180691204	180692425	LTR|ERV1|LTR12C	+	chr2	180692103	180916939	SCHLAP1|NR_104322.1	+	180692103,180724595,180725190,180823932,180827240,180899649,180916272	180692441,180724690,180725291,180824070,180827507,180899718,180916939	0.956472
K562	chr15	67254294	67254331	67254330	-	High_confidence	5	5	17	0.730273	3.702820	chr15	67254222	67254350	SINE|MIR|MIRc	-	chr15	67201706	67254673	MSTRG.9536.3	-	67201706,67203547,67204043,67205018,67208561,67209461,67231813,67235978,67236407,67236629,67254558	67202898,67203597,67204148,67205046,67208658,67209544,67231897,67236068,67236504,67236820,67254673	0.764706
K562	chr17	64393180	64393186	64393180	-	High_confidence	3	3	7	0.300701	2.584963	chr17	64392994	64393185	LTR|ERV1|MER51D	+	chr17	64319414	64393143	MSTRG.12883.1	-	64319414,64329699,64341633,64348259,64350379,64352389,64353490,64354932,64356110,64360139,64363148,64369749,64375050,64377823,64390488,64390601,64393064	64323845,64329722,64341690,64348322,64350433,64352463,64353518,64355040,64356398,64360415,64363397,64370025,64375356,64378117,64390515,64390763,64393143	0.714286
K562	chr8	30729063	30729105	30729093	+	RAMPAGE_only	11	11	28	1.202802	3.182928	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30732246	30766470	UBXN8|ENST00000620074.4	+	30732246,30744327,30751395,30753034,30754664,30756764,30760887,30763272,30766226	30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763347,30766470	0.892857
K562	chr7	1854510	1854525	1854524	-	High_confidence	10	12	21	0.902102	3.384184	chr7	1854398	1854689	LTR|ERVL-MaLR|MLT1A0	-	chr7	1815815	1855220	MSTRG.25300.10	-	1815815,1854751	1816228,1855220	0.904762
K562	chr22	18149858	18149869	18149858	+	High_confidence	3	3	14	0.601401	3.238901	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.857143
K562	chr9	13038049	13038091	13038077	-	RAMPAGE_only	22	23	124	5.326697	4.127403	chr9	13037883	13043909	LINE|L1|L1PA2	+	chr9	12958502	13034326	AL161449.2|ENST00000649120.1	-	12958502,12962319,13003434,13004932,13029408,13034170	12959988,12962417,13003622,13005304,13029577,13034326	0.741935
K562	chr11	36557259	36557260	36557259	+	RAMPAGE_only	8	8	8	0.343658	2.500000	chr11	36551606	36557636	LINE|L1|L1HS	-	chr11	36515463	36593156	RAG1|ENST00000534663.1	+	36515463,36520131,36535975,36563384,36565776,36566446,36567355,36573290,36590383,36592966	36515531,36520229,36536034,36563498,36565880,36566551,36567429,36576093,36590475,36593156	0.500000
K562	chr19	46203082	46203083	46203082	-	High_confidence	10	10	12	0.515487	2.732159	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.750000
K562	chr14	30297031	30297040	30297031	-	High_confidence	11	12	23	0.988016	3.845351	chr14	30296851	30297229	LTR|ERVL-MaLR|MSTA	-	chr14	30296631	30296864	MSTRG.7887.1	-	30296631	30296864	0.652174
K562	chrX	118282053	118282054	118282053	-	High_confidence	2285	2292	2327	99.961476	4.567418	chrX	118281640	118283269	LTR|ERV1|LTR12C	-	chrX	118249976	118282047	MSTRG.29758.1	-	118249976,118263455,118281431	118250084,118263584,118282047	0.978513
K562	chr21	18760008	18760019	18760014	-	High_confidence	6	6	15	0.644358	3.324863	chr21	18759779	18760548	LTR|ERV1|LTR17	-	chr21	18561264	18760003	MIR548XHG|ENST00000437492.5	-	18561264,18589526,18737923,18759773	18561691,18589620,18738025,18760003	0.866667
K562	chr3	15657883	15657884	15657883	+	RAMPAGE_only	21	21	21	0.902102	3.522572	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
K562	chr16	85047404	85047411	85047410	+	High_confidence	4	4	9	0.386615	3.169925	chr16	85046674	85047999	LINE|L1|L1MD2	-	chr16	85047480	85081772	MSTRG.11425.3	+	85047480,85066899,85071782,85072924,85075843,85077424,85078414,85078924,85081314	85047719,85067400,85071882,85072998,85075914,85077632,85078455,85079003,85081772	0.777778
K562	chr17	59107089	59107131	59107102	+	High_confidence	2	2	11	0.472530	3.121928	chr17	59107089	59107281	DNA|hAT-Charlie|MER5A	-	chr17	59106597	59118267	AC099850.1|ENST00000451775.1	+	59106597,59117923	59107591,59118267	0.545455
K562	chr8	74866896	74866897	74866896	-	High_confidence	6	6	9	0.386615	3.169925	chr8	74866519	74872545	LINE|L1|L1PA2	+	chr8	74844847	74866936	AC011632.1|ENST00000522914.1	-	74844847,74845876,74866517,74866864	74845035,74845953,74866634,74866936	0.666667
K562	chr2	68064134	68064160	68064149	-	RAMPAGE_only	3	4	9	0.386615	2.750000	chr2	68063790	68069896	LINE|L1|L1PA5	+	chr2	68042199	68063027	C1D|NM_173177.2	-	68042199,68045987,68046343,68047172,68062957	68043053,68046043,68046410,68047319,68063027	0.666667
K562	chr3	58842528	58842616	58842615	-	High_confidence	18	19	163	7.002029	4.996821	chr3	58842154	58848179	LINE|L1|L1PA2	+	chr3	58742103	58842625	MSTRG.19940.7	-	58742103,58753768,58806394,58831685,58842146	58742572,58753863,58806456,58831889,58842625	0.950920
K562	chr2	96895292	96895325	96895292	-	High_confidence	2	3	17	0.730273	3.734522	chr2	96894981	96895398	LINE|L1|L1MC5a	-	chr2	96875881	96895162	FAM178B|NM_001172667.1	-	96875881,96877889,96878415,96893925,96895060	96876308,96878042,96878493,96894051,96895162	1.000000
K562	chr9	69307100	69307135	69307119	-	High_confidence	3	3	13	0.558444	3.022055	chr9	69306938	69307567	LTR|ERV1|MER41B	-	chr9	69296684	69307135	BANCR|ENST00000624238.2	-	69296684,69304935,69306147,69306853	69296867,69305077,69306290,69307135	0.923077
K562	chr22	39021125	39021156	39021146	+	High_confidence	185	199	619	26.590526	6.048666	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.980614
K562	chr12	91680088	91680131	91680130	+	High_confidence	188	215	406	17.440636	6.659308	chr12	91679985	91680315	SINE|Alu|AluSc8	-	chr12	91680130	91748198	MSTRG.6541.1	+	91680130,91680789,91693860,91737926	91680614,91680872,91694185,91748198	0.822660
K562	chr11	64226142	64226180	64226158	-	High_confidence	58	61	377	16.194876	6.961126	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.986737
K562	chr2	231515823	231515855	231515854	-	RAMPAGE_only	9	10	40	1.718289	4.631305	chr2	231515703	231516098	LTR|ERV1|MER39	+	chr2	231508425	231514339	LINC00471|NR_024079.1	-	231508425,231513526,231514081	231509343,231513632,231514339	0.625000
K562	chr5	34244736	34244816	34244804	-	High_confidence	10	10	74	3.178835	5.428718	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.527027
K562	chr19	32700143	32700147	32700143	-	High_confidence	20	20	31	1.331674	4.155652	chr19	32699724	32700522	LTR|ERV1|LTR12	-	chr19	32687088	32700087	MSTRG.14573.1	-	32687088,32691362,32699684	32687268,32694094,32700087	1.000000
K562	chr1	6200576	6200658	6200609	-	High_confidence	39	62	271	11.641410	4.046069	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.981550
K562	chr3	39154540	39154631	39154613	-	High_confidence	16	16	97	4.166851	4.699471	chr3	39154504	39154649	LINE|L2|L2c	+	chr3	39141850	39154602	CSRNP1|NM_001320560.1	-	39141850,39144136,39144996,39146477,39154496	39144044,39144451,39145256,39146722,39154602	0.907216
K562	chr19	51549765	51549863	51549804	+	RAMPAGE_only	50	51	246	10.567479	5.751495	chr19	51549189	51549853	LTR|ERVL|MER76	-	chr19	51548520	51551412	MSTRG.15086.1	+	51548520	51551412	0.987805
K562	chr21	20258626	20258718	20258684	-	High_confidence	18	18	61	2.620391	5.123231	chr21	20258185	20258931	LTR|ERVL|MER54B	-	chr21	20256751	20258820	LINC02573|ENST00000436373.1	-	20256751,20258551	20257346,20258820	0.606557
K562	chr5	136466676	136466690	136466676	+	High_confidence	620	624	958	41.153027	7.236698	chr5	136466574	136466873	SINE|Alu|AluY	-	chr5	136466676	136520298	AC112178.1|ENST00000446720.2	+	136466676,136504599,136520174	136466885,136504693,136520298	0.609603
K562	chr8	129399614	129399656	129399614	-	RAMPAGE_only	10	11	19	0.816187	3.392147	chr8	129399255	129399619	LTR|ERVL-MaLR|THE1B	-	chr8	129352428	129362268	MSTRG.27766.14	-	129352428,129360173	129353265,129362268	0.789474
K562	chr19	17823626	17823627	17823626	-	RAMPAGE_only	32	32	32	1.374631	4.452820	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.968750
K562	chr21	38121347	38121362	38121347	-	High_confidence	215	226	614	26.375740	5.413027	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	37623558	38121345	KCNJ6|ENST00000645093.1	-	37623558,37714210,37840657,38120306,38121127	37625484,37715131,37840709,38120408,38121345	0.845277
K562	chr19	11555254	11555255	11555254	-	High_confidence	11	14	16	0.687316	3.250000	chr19	11554976	11555277	SINE|Alu|AluSg	+	chr19	11553046	11555467	ELOF1|ENST00000587806.5	-	11553046,11554010,11554231,11555173,11555344	11553810,11554081,11554365,11555253,11555467	1.000000
K562	chr15	66582165	66582166	66582165	+	High_confidence	445	464	502	21.564530	5.902130	chr15	66581970	66582322	LTR|ERVL-MaLR|THE1A	+	chr15	66582189	66782481	MSTRG.9515.1	+	66582189,66664361,66668340,66670402,66683998,66711667,66716420,66780996	66582248,66664452,66668454,66670540,66684042,66711724,66716498,66782481	0.711155
K562	chr3	151539241	151539275	151539270	-	RAMPAGE_only	2	2	9	0.386615	2.750000	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.666667
K562	chr7	93591534	93591590	93591534	+	High_confidence	54	54	291	12.500554	5.316884	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591296	93809231	MSTRG.26057.1	+	93591296,93807203	93591771,93809231	0.797251
K562	chr4	7754076	7754077	7754076	+	High_confidence	459	467	479	20.576514	6.972993	chr4	7753883	7754236	LTR|ERVL-MaLR|THE1A	+	chr4	7754089	7778928	AFAP1-AS1|NR_026892.1	+	7754089,7772203	7754159,7778928	0.787056
K562	chr12	72186084	72186085	72186084	+	RAMPAGE_only	146	146	160	6.873157	4.102107	chr12	72184856	72186604	LTR|ERV1|LTR12C	+	chr12	72031291	72186618	TPH2|ENST00000547348.5	+	72031291,72047555,72167537,72186156	72031391,72047657,72167654,72186618	0.962500
K562	chr5	71586744	71586805	71586744	+	High_confidence	9	10	17	0.730273	2.813846	chr5	71586450	71587046	LTR|ERV1|MER51A	-	chr5	71587287	71657215	MCCC2|ENST00000512218.6	+	71587287,71592925,71596279,71599658,71602505,71604355,71632120,71634942,71635150,71641002,71643770,71646210,71649096,71650068,71652668,71656742	71587554,71592992,71596364,71599760,71602633,71604468,71632185,71635042,71635246,71641083,71643895,71646277,71649253,71650183,71652754,71657215	1.000000
K562	chr8	30729219	30729253	30729252	+	RAMPAGE_only	6	6	14	0.601401	3.039149	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30732246	30766470	UBXN8|ENST00000620074.4	+	30732246,30744327,30751395,30753034,30754664,30756764,30760887,30763272,30766226	30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763347,30766470	0.714286
K562	chr1	110871167	110871201	110871187	+	High_confidence	20	35	109	4.682338	4.398864	chr1	110870731	110871665	LINE|L2|L2b	-	chr1	110871187	110899922	CD53|ENST00000648608.1	+	110871187,110873155,110891391,110892344,110894326,110894959,110896652,110897808,110899123	110871259,110873248,110891471,110892533,110894401,110895055,110896733,110897892,110899922	0.935780
K562	chr5	177022057	177022093	177022092	+	High_confidence	9	13	27	1.159845	3.880456	chr5	177021951	177022107	LINE|L2|L2a	-	chr5	177022107	177050892	MSTRG.23538.1	+	177022107,177041125,177041777,177044388,177050750	177022289,177041229,177041870,177044533,177050892	0.962963
K562	chr18	1407163	1407231	1407230	-	High_confidence	292	295	1489	63.963317	7.349620	chr18	1407047	1407340	SINE|Alu|AluY	+	chr18	1268310	1407180	LINC00470|ENST00000412816.7	-	1268310,1272441,1275965,1368484,1406986	1269852,1272511,1276077,1368597,1407180	0.646743
K562	chr12	42442590	42442635	42442590	+	High_confidence	8	8	24	1.030974	4.055958	chr12	42442198	42442662	LTR|ERVK|LTR22E	+	chr12	42442648	42448623	PPHLN1|ENST00000624028.1	+	42442648	42448623	0.958333
K562	chr2	164995103	164995117	164995115	+	RAMPAGE_only	9	13	25	1.073931	4.136842	chr2	164993938	164995321	LTR|ERV1|LTR12C	-	chr2	164992156	165208261	AC019197.1|ENST00000629817.2	+	164992156,164993460,165091119,165130044,165139598,165194895,165208112	164992168,164993640,165091299,165130204,165139709,165195083,165208261	0.760000
K562	chr7	12589404	12589430	12589429	+	High_confidence	15	15	29	1.245760	4.307355	chr7	12589215	12589522	SINE|Alu|AluY	-	chr7	12589432	12653602	SCIN|ENST00000519209.5	+	12589432,12604513,12622800,12625009,12625761,12626583,12629100,12636044,12640346,12644137,12644583,12649466,12651840,12652587	12589573,12604663,12622893,12625142,12625850,12626799,12629222,12636135,12640517,12644315,12644705,12649544,12651901,12653602	0.827586
K562	chr17	47067498	47067518	47067498	-	High_confidence	356	390	1584	68.044254	5.816391	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.935606
K562	chr2	65819225	65819333	65819261	-	High_confidence	22	24	146	6.271756	5.265148	chr2	65818787	65819322	LINE|L2|L2-3_Crp	+	chr2	65810776	65819295	MSTRG.15947.1	-	65810776,65818879	65810918,65819295	1.000000
K562	chr9	129489092	129489121	129489106	+	High_confidence	3	3	12	0.515487	3.459432	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.750000
K562	chr4	126955938	126955939	126955938	-	High_confidence	47	49	57	2.448562	4.206139	chr4	126955322	126956872	LTR|ERV1|MER52A	+	chr4	126952343	126956773	MSTRG.21840.5	-	126952343,126956682	126956316,126956773	0.894737
K562	chr3	134485425	134485467	134485449	-	High_confidence	3	5	18	0.773230	3.734522	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.777778
K562	chr5	997318	997319	997318	-	High_confidence	4	4	7	0.300701	2.807355	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.571429
K562	chr4	76050205	76050206	76050205	-	High_confidence	1422	1427	1485	63.791488	5.701210	chr4	76049791	76051220	LTR|ERV1|LTR12C	-	chr4	76033849	76050263	MSTRG.21512.3	-	76033849,76035046,76035215,76035926,76041113,76042258	76034816,76035119,76035342,76036064,76041488,76050263	0.957576
K562	chr6	164337850	164337909	164337850	-	High_confidence	9	9	38	1.632375	4.815623	chr6	164337812	164338432	LTR|ERV1|MER41B	+	chr6	164291290	164338112	MSTRG.25209.1	-	164291290,164318036,164337712	164293729,164318143,164338112	0.657895
K562	chr9	39809852	39809879	39809878	-	High_confidence	3	3	11	0.472530	3.095795	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.636364
K562	chr10	131897827	131897828	131897827	+	RAMPAGE_only	9	10	11	0.472530	3.277613	chr10	131897312	131897886	LTR|ERV1|MER49	+	chr10	131900643	131959834	PPP2R2D|NM_001291310.1	+	131900643,131901237,131911561,131934457,131940030,131940581,131943967,131945294,131947529,131955683	131901155,131901330,131912598,131934555,131940196,131940694,131944145,131945459,131947791,131959834	0.909091
K562	chr2	96638016	96638031	96638022	-	High_confidence	7	7	18	0.773230	3.454822	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.833333
K562	chr2	26974581	26974623	26974581	+	RAMPAGE_only	18	18	68	2.921092	5.233635	chr2	26974629	26974850	SINE|MIR|MIRb	+	chr2	26970657	27027196	MAPRE3|ENST00000405074.7	+	26970657,27022211,27023331,27024095,27025582,27025879,27026279	26970802,27022339,27023477,27024252,27025737,27026032,27027196	0.588235
K562	chr5	154038408	154038409	154038408	-	High_confidence	97	97	138	5.928098	5.414690	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.710145
K562	chr2	142748988	142748989	142748988	+	RAMPAGE_only	11	11	14	0.601401	3.546594	chr2	142748611	142749226	LTR|ERV1|LTR9D	-	chr2	142877497	143055832	KYNU|ENST00000264170.8	+	142877497,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142877736,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143055832	0.642857
K562	chr1	153119468	153119469	153119468	-	RAMPAGE_only	46	46	51	2.190819	4.007292	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112113	153113515	SPRR2F|ENST00000468739.1	-	153112113,153113473	153112752,153113515	0.980392
K562	chr3	101638606	101638617	101638616	-	High_confidence	4	5	11	0.472530	2.913977	chr3	101632599	101641508	LTR|ERV1|HERVS71-int	+	chr3	101620899	101638949	MSTRG.20148.1	-	101620899,101634341,101636696,101637169,101637574	101626411,101635284,101636774,101637238,101638949	0.909091
K562	chr12	22082412	22082524	22082523	-	RAMPAGE_only	11	12	67	2.878134	4.888869	chr12	22082443	22082846	LTR|ERVL|LTR16A	+	chr12	22063772	22070613	ST8SIA1|ENST00000536535.1	-	22063772,22066344,22068862,22070571	22063927,22066435,22069020,22070613	0.746269
K562	chr15	34588450	34588453	34588452	-	High_confidence	30	55	70	3.007006	4.729423	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.928571
K562	chr4	126955811	126955824	126955823	-	High_confidence	6	6	23	0.988016	3.788755	chr4	126955322	126956872	LTR|ERV1|MER52A	+	chr4	126952343	126956773	MSTRG.21840.5	-	126952343,126956682	126956316,126956773	0.869565
K562	chr7	116724120	116724132	116724131	+	High_confidence	5	5	10	0.429572	2.947703	chr7	116718497	116724489	LINE|L1|L1PA2	-	chr7	116724145	116755414	MET|ENST00000495962.1	+	116724145,116724771,116731667,116739949,116740851,116755354	116724249,116724847,116731859,116740084,116741025,116755414	0.700000
K562	chrX	107155937	107155974	107155964	-	RAMPAGE_only	3	4	17	0.730273	3.750000	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.823529
K562	chr7	6057736	6057746	6057745	-	RAMPAGE_only	6	6	14	0.601401	3.180833	chr7	6057659	6057924	SINE|Alu|AluSx1	-	chr7	6046722	6059056	EIF2AK1|ENST00000463213.5	-	6046722,6048806,6049911,6054545,6058965	6047091,6048844,6050045,6054704,6059056	0.857143
K562	chr6	170737733	170737755	170737754	-	High_confidence	4	4	12	0.515487	3.251629	chr6	170737715	170737885	LTR|ERVL-MaLR|MLT1H2	-	chr6	170736172	170737777	AL731684.1|ENST00000415530.1	-	170736172,170737500,170737611	170736394,170737551,170737777	0.833333
K562	chr4	162740491	162740492	162740491	+	High_confidence	78	78	79	3.393621	4.890608	chr4	162739358	162740906	LTR|ERV1|LTR12C	+	chr4	162740667	162742048	AC005150.1|ENST00000512831.1	+	162740667,162741668	162740915,162742048	0.987342
K562	chr16	2757853	2757854	2757853	+	High_confidence	6	6	9	0.386615	2.750000	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.888889
K562	chr3	118914729	118914750	118914749	-	RAMPAGE_only	2	3	8	0.343658	2.521641	chr3	118914243	118920271	LINE|L1|L1PA2	+	chr3	118902390	119034728	IGSF11|ENST00000491903.1	-	118902390,118904647,118905595,118926100,118928508,118930111,119034530	118902961,118904714,118905718,118926256,118928716,118930275,119034728	0.875000
K562	chr19	4288506	4288540	4288506	+	RAMPAGE_only	6	6	18	0.773230	2.660130	chr19	4288548	4288658	LINE|CR1|L3	+	chr19	4279295	4290691	SHD|ENST00000599689.1	+	4279295,4282869,4283053,4284780,4290446	4280360,4282975,4283242,4284904,4290691	0.888889
K562	chr5	31530912	31530913	31530912	-	RAMPAGE_only	7	10	10	0.429572	2.947703	chr5	31530667	31530954	LINE|L2|L2c	+	chr5	31400496	31532061	DROSHA|ENST00000511367.6	-	31400496,31405676,31406852,31409055,31409249,31410745,31421271,31422786,31424426,31429474,31431575,31435764,31437238,31448546,31449280,31451532,31464235,31466181,31467938,31472062,31483553,31484880,31486490,31493206,31495285,31504554,31508620,31511034,31514987,31515453,31521122,31526078,31529039,31530797,31531989	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31422944,31424471,31429545,31431678,31435864,31437298,31448607,31449419,31451640,31464343,31466281,31468063,31472232,31483628,31484962,31486562,31493293,31495372,31504635,31508775,31511176,31515219,31515564,31521215,31526912,31529105,31530924,31532061	0.900000
K562	chr7	10786672	10786699	10786698	-	RAMPAGE_only	36	40	139	5.971055	4.984467	chr7	10786632	10786836	SINE|Alu|AluY	-	chr7	10449819	10779944	AC004949.1|ENST00000634803.1	-	10449819,10561481,10779881	10452778,10561577,10779944	0.510791
K562	chrX	7147267	7147298	7147267	+	High_confidence	8	9	16	0.687316	3.625000	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.875000
K562	chr12	113773650	113773686	113773650	-	High_confidence	355	412	989	42.484701	6.815028	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113745703	113773663	LINC01234|ENST00000550223.5	-	113745703,113767074,113773614	113746595,113767208,113773663	0.723964
K562	chr22	24011756	24011757	24011756	+	High_confidence	30	30	31	1.331674	3.989898	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.967742
K562	chr4_GL000008v2_random	170331	170332	170331	-	RAMPAGE_only	10	10	15	0.644358	3.456565	chr4_GL000008v2_random	170280	170685	LTR|ERV1|MER61C	+	chr4_GL000008v2_random	161986	178171	ANKRD20A12P|NR_046228.1	-	161986,163784,164602,175824,177526	162439,163998,164884,175974,178171	1.000000
K562	chr8	124171528	124171529	124171528	-	High_confidence	11	11	11	0.472530	3.095795	chr8	124171344	124171724	LTR|ERVL-MaLR|THE1D	-	chr8	124046070	124171522	FER1L6-AS2|NR_103547.1	-	124046070,124047556,124058787,124060167,124171427	124046776,124047693,124058972,124060792,124171522	0.727273
K562	chr8	128049590	128049591	128049590	+	RAMPAGE_only	6	6	9	0.386615	3.169925	chr8	128049515	128049731	LTR|ERVL|LTR33	+	chr8	128009657	128101097	PVT1|ENST00000523190.5	+	128009657,128010317,128096517,128100979	128009718,128010444,128096654,128101097	0.555556
K562	chr1	30731938	30731988	30731970	+	High_confidence	12	14	79	3.393621	5.000063	chr1	30731667	30732002	LINE|L2|L2b	+	chr1	30731868	30738539	MSTRG.648.1	+	30731868,30732804,30738326	30732146,30732984,30738539	0.721519
K562	chr19	9323736	9323758	9323748	+	High_confidence	5	7	13	0.558444	2.625815	chr19	9323408	9324010	LTR|ERV1|MER51A	+	chr19	9323771	9343845	ZNF559|NM_001202411.1	+	9323771,9324694,9333014,9338493,9339192,9341101,9341616	9324228,9324780,9333113,9338582,9339319,9341184,9343845	0.923077
K562	chr16	90187230	90187238	90187237	+	RAMPAGE_only	5	6	14	0.601401	2.692381	chr16	90186983	90187364	LTR|ERVL-MaLR|THE1C	+	chr16	90185996	90216935	LINC02193|ENST00000568418.1	+	90185996,90194120,90214681,90215292	90186154,90194225,90214831,90216935	1.000000
K562	chr5	54390771	54390783	54390771	+	RAMPAGE_only	2	2	6	0.257743	2.584963	chr5	54390655	54391005	LTR|ERVL-MaLR|THE1B	+	chr5	54395350	54415099	LINC01033|ENST00000504609.3	+	54395350,54396996,54400436,54401642,54408454,54415021	54395417,54397134,54400598,54401865,54408521,54415099	0.500000
K562	chr6	144542335	144542366	144542335	+	RAMPAGE_only	6	8	22	0.945059	4.277613	chr6	144542256	144542704	LINE|L2|L2b	-	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.863636
K562	chr8	75278573	75278586	75278573	-	High_confidence	3	3	11	0.472530	3.095795	chr8	75278367	75284402	LINE|L1|L1PA4	+	chr8	75223768	75278497	CASC9|ENST00000521147.1	-	75223768,75278356	75224358,75278497	1.000000
K562	chr11	60185714	60185731	60185714	+	High_confidence	2	2	9	0.386615	2.503258	chr11	60185445	60185905	LTR|ERV1|LTR2	+	chr11	60185701	60317944	MS4A4A|ENST00000649552.1	+	60185701,60185925,60292224,60297196,60301000,60302558,60306099,60317864	60185815,60186171,60292384,60297325,60301057,60302717,60306201,60317944	0.666667
K562	chr5	19804023	19804037	19804036	-	High_confidence	6	7	11	0.472530	3.027169	chr5	19803839	19804143	SINE|Alu|AluYm1	+	chr5	19721390	19804028	CDH18|ENST00000508350.1	-	19721390,19746941,19803821	19721466,19747236,19804028	1.000000
K562	chr10	97634108	97634137	97634108	-	High_confidence	4	5	19	0.816187	3.683542	chr10	97634006	97634308	SINE|Alu|AluJo	+	chr10	97614552	97634156	MORN4|NM_001098831.1	-	97614552,97616677,97617207,97619586,97634004	97616411,97616787,97617322,97619683,97634156	0.736842
K562	chr12	47223484	47223511	47223510	+	High_confidence	2	2	8	0.343658	2.521641	chr12	47223277	47223596	LINE|L2|L2	-	chr12	47223500	47235566	PCED1B|ENST00000549630.1	+	47223500,47235006	47223672,47235566	0.750000
K562	chr1	23403943	23403957	23403943	-	RAMPAGE_only	5	6	10	0.429572	3.321928	chr1	23403928	23404035	LINE|RTE-BovB|MamRTE1	+	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.700000
K562	chr16	15257181	15257187	15257186	-	RAMPAGE_only	300	359	578	24.829279	7.562268	chr16	15257021	15257367	LTR|ERVL-MaLR|THE1B	-	chr16	15125241	15154564	PKD1P6|ENST00000343738.10	-	15125241,15125550,15125690,15127469,15127686,15127991,15128221,15129881,15130201,15130634,15131086,15132720,15133263,15133489,15133794,15134201,15135279,15135973,15136566,15136868,15137749,15138191,15138384,15154349	15125325,15125600,15125807,15127596,15127897,15128135,15128389,15130077,15130454,15130791,15131707,15132873,15133423,15133703,15134074,15134345,15135429,15136131,15136750,15137535,15137923,15138263,15138454,15154564	0.520761
K562	chr16	4469632	4469657	4469656	-	High_confidence	7	7	13	0.558444	3.022055	chr16	4469600	4469682	SINE|Alu|AluYj4	-	chr16	4463802	4469685	NMRAL1|ENST00000572391.1	-	4463802,4466152,4466526,4469503	4463850,4466402,4466685,4469685	0.769231
K562	chr3	101635465	101635507	101635504	-	RAMPAGE_only	14	16	49	2.104904	4.442752	chr3	101632599	101641508	LTR|ERV1|HERVS71-int	+	chr3	101620899	101638949	MSTRG.20148.1	-	101620899,101634341,101636696,101637169,101637574	101626411,101635284,101636774,101637238,101638949	0.979592
K562	chr6	161216783	161216807	161216800	-	RAMPAGE_only	6	6	25	1.073931	3.783465	chr6	161216582	161216931	LTR|ERVL-MaLR|THE1A	-	chr6	161149204	161232236	AGPAT4|ENST00000436279.1	-	161149204,161153345,161154148,161165576,161166247,161232035	161149255,161153499,161154310,161165713,161166417,161232236	0.800000
K562	chr6	31400605	31400620	31400605	-	High_confidence	69	93	275	11.813238	4.880521	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31394288	31400768	MSTRG.24082.1	-	31394288,31398058	31395217,31400768	0.992727
K562	chr13	113815608	113815609	113815608	+	RAMPAGE_only	4	4	7	0.300701	2.584963	chr13	113815414	113815766	LTR|ERVL-MaLR|THE1A	+	chr13	113759242	113816995	TMEM255B|ENST00000375353.4	+	113759242,113766114,113769097,113795147,113799338,113800826,113801652,113804884,113811735	113759315,113766257,113769160,113795237,113799419,113800912,113801812,113805028,113816995	0.714286
K562	chr4	70993073	70993074	70993073	+	High_confidence	11	11	11	0.472530	2.550341	chr4	70992983	70993102	SINE|MIR|MIR	+	chr4	70993438	71030914	DCK|ENST00000286648.9	+	70993438,70998066,71022366,71023558,71025815,71026664,71029351	70993926,70998182,71022560,71023706,71025931,71026755,71030914	1.000000
K562	chr3	157512752	157512764	157512752	+	RAMPAGE_only	32	36	85	3.651365	5.487090	chr3	157512613	157513163	LTR|Gypsy|MamGypLTR3a	+	chr3	157543245	157578885	PQLC2L|ENST00000312275.9	+	157543245,157553229,157571176,157571954,157578278	157543509,157553340,157571306,157572043,157578885	0.705882
K562	chr16	67571156	67571206	67571156	+	High_confidence	5	5	12	0.515487	3.251629	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	1.000000
K562	chr6	15555855	15555862	15555855	+	High_confidence	3	3	8	0.343658	2.521641	chr6	15555299	15555924	LTR|ERV1|MER41B	+	chr6	15555764	15570480	MSTRG.23801.1	+	15555764,15558985,15570324	15556008,15561199,15570480	0.750000
K562	chr3	147245190	147245191	147245190	-	High_confidence	20	20	20	0.859145	3.921928	chr3	147244906	147246119	LTR|ERV1|LTR12C	-	chr3	147156472	147245177	MSTRG.20522.2	-	147156472,147244837	147156561,147245177	0.850000
K562	chr16	17014269	17014283	17014269	+	High_confidence	77	80	156	6.701328	6.455126	chr16	17014167	17014470	SINE|Alu|AluY	-	chr16	17013753	17138736	MSTRG.10503.1	+	17013753,17025713,17134465,17137515,17138241	17014471,17025795,17134550,17137614,17138736	0.512821
K562	chr9	110417547	110417568	110417547	-	RAMPAGE_only	3	3	9	0.386615	2.725481	chr9	110417102	110423126	LINE|L1|L1HS	+	chr9	110365255	110579738	SVEP1|ENST00000374469.5	-	110365255,110369922,110375367,110377270,110379346,110385897,110387284,110389523,110400853,110404326,110406159,110411062,110427590,110429142,110429919,110430273,110431914,110432461,110434335,110435240,110436379,110443544,110445836,110446899,110450058,110451288,110455589,110457255,110458470,110458951,110465864,110468939,110471363,110472158,110476203,110479634,110481241,110482360,110483585,110489649,110496814,110499040,110503037,110512925,110513947,110546114,110549848,110579012	110366560,110370016,110375463,110377366,110379517,110386074,110387458,110389587,110401009,110404552,110408951,110411735,110427758,110429334,110430004,110430450,110432034,110432635,110434506,110435364,110436504,110443720,110446038,110447057,110450260,110451402,110455703,110457352,110458562,110459113,110466026,110469101,110471597,110472323,110476315,110479756,110481436,110482492,110483693,110489779,110496933,110499238,110503217,110513105,110514106,110546291,110550104,110579738	0.666667
K562	chr3	126917802	126917804	126917802	+	RAMPAGE_only	3	5	6	0.257743	2.584963	chr3	126917635	126918002	LTR|ERVL-MaLR|MLT1A0	+	chr3	126935123	126960398	CHCHD6|ENST00000504973.5	+	126935123,126953024,126957415,126960195	126935186,126953184,126957551,126960398	0.666667
K562	chr15	78306517	78306538	78306517	-	RAMPAGE_only	11	11	29	1.245760	4.521641	chr15	78306427	78306552	LINE|CR1|L3	-	chr15	78283234	78299794	WDR61|ENST00000267973.6	-	78283234,78285260,78286040,78288288,78289618,78289950,78292615,78293166,78294945,78295674,78299561	78283521,78285339,78286133,78288382,78289712,78290099,78292788,78293272,78294973,78295725,78299794	0.827586
K562	chr10	25466213	25466231	25466213	+	RAMPAGE_only	5	5	18	0.773230	4.058814	chr10	25466034	25466313	LTR|ERV1|LTR12F	+	chr10	25175360	25602229	GPR158|NM_020752.2	+	25175360,25221051,25395910,25412249,25466650,25550975,25572648,25589006,25594291,25596642,25597771	25176322,25221157,25396013,25412473,25466719,25551085,25572887,25589145,25594397,25596789,25602229	0.666667
K562	chr2	201122589	201122590	201122589	+	RAMPAGE_only	12	13	17	0.730273	3.499228	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201118663	201160455	CFLAR|ENST00000439154.6	+	201118663,201129728,201133028,201135971,201140356,201142644,201145377,201149002,201149753,201160431	201118901,201130146,201133134,201136107,201140439,201142762,201145432,201149052,201149835,201160455	0.882353
K562	chr4	89490948	89490949	89490948	+	High_confidence	396	397	406	17.440636	4.774648	chr4	89489873	89491365	LTR|ERV1|LTR12C	+	chr4	89490975	89660355	MSTRG.21603.1	+	89490975,89587820,89627781,89642416,89660213	89491494,89587940,89627917,89642520,89660355	0.967980
K562	chr3	139344535	139344548	139344547	+	High_confidence	861	862	2416	103.784669	6.279266	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.826159
K562	chr21	38121472	38121523	38121491	+	High_confidence	315	321	921	39.563610	6.397391	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.931596
K562	chr7	99410041	99410046	99410041	+	RAMPAGE_only	3	3	9	0.386615	2.947703	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.777778
K562	chrX	107156143	107156188	107156143	-	RAMPAGE_only	27	27	106	4.553466	5.505610	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.547170
K562	chr6	140898402	140898430	140898423	-	High_confidence	37	62	185	7.947088	6.548221	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140898424	MSTRG.25002.2	-	140845957,140898187	140846304,140898424	0.567568
K562	chr21	33931146	33931235	33931146	+	High_confidence	20	22	113	4.854167	4.805792	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.884956
K562	chr4	65241687	65241702	65241701	-	High_confidence	3	3	10	0.429572	3.121928	chr4	65241173	65242746	LTR|ERV1|MER52A	-	chr4	65222367	65241809	MSTRG.21431.1	-	65222367,65241181	65222427,65241809	1.000000
K562	chr7	153413682	153413715	153413683	-	High_confidence	21	24	49	2.104904	4.964662	chr7	153409397	153413807	LTR|ERV1|HERV-Fc1-int	-	chr7	153355364	153413936	MSTRG.26734.1	-	153355364,153361047,153405491,153406955,153412090	153356481,153361220,153405598,153407084,153413936	0.632653
K562	chr8	91197423	91197479	91197423	+	RAMPAGE_only	4	4	29	1.245760	4.444188	chr8	91191844	91197868	LINE|L1|L1PA3	-	chr8	91209493	91395649	SLC26A7|ENST00000522181.5	+	91209493,91218889,91249618,91289135,91295530,91318215,91334294,91340403,91343352,91351809,91352900,91362352,91363471,91366579,91369784,91389337,91393796,91393935,91395061	91209542,91219005,91249844,91289246,91295703,91318380,91334447,91340551,91343466,91351887,91352996,91362459,91363538,91366717,91369833,91389438,91393851,91394039,91395649	0.517241
K562	chr1	167867290	167867312	167867300	+	RAMPAGE_only	7	7	23	0.988016	4.095795	chr1	167866780	167869426	LTR|ERV1|Harlequin-int	+	chr1	167863584	167991339	MSTRG.2182.1	+	167863584,167951799,167966628,167974829,167987494,167991203	167863838,167951861,167966721,167975015,167987608,167991339	0.608696
K562	chr3	165918797	165918827	165918816	+	High_confidence	75	79	351	15.077988	6.258930	chr3	165917730	165919011	LTR|ERV1|LTR12C	-	chr3	165918798	165923025	MSTRG.20657.1	+	165918798	165923025	0.846154
K562	chr4	34335350	34335351	34335350	-	High_confidence	1123	1124	1181	50.732490	5.059819	chr4	34334935	34336205	LTR|ERV1|LTR12C	-	chr4	34237811	34335334	MSTRG.21256.3	-	34237811,34259086,34332003,34334928	34238430,34259226,34332044,34335334	0.939881
K562	chr9	13038340	13038344	13038340	-	RAMPAGE_only	8	9	13	0.558444	3.251629	chr9	13037883	13043909	LINE|L1|L1PA2	+	chr9	12958502	13034326	AL161449.2|ENST00000649120.1	-	12958502,12962319,13003434,13004932,13029408,13034170	12959988,12962417,13003622,13005304,13029577,13034326	0.538462
K562	chr6	67887066	67887117	67887073	-	RAMPAGE_only	511	553	853	36.642518	6.137442	chr6	67881436	67888662	LTR|ERV1|HERVH-int	-	chr6	67876872	67889154	MSTRG.24450.2	-	67876872,67886967,67888910	67883876,67887398,67889154	0.832356
K562	chr4	98891320	98891330	98891329	-	High_confidence	4	6	10	0.429572	2.921928	chr4	98891322	98891802	LINE|L1|L1MB2	+	chr4	98881009	98890898	EIF4E|ENST00000505194.5	-	98881009,98884921,98887078,98887888,98890786	98881142,98885061,98887192,98887952,98890898	1.000000
K562	chr4	141333528	141333534	141333528	+	High_confidence	3	3	8	0.343658	3.000000	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141332917	141334123	MSTRG.21921.1	+	141332917	141334123	0.625000
K562	chr16	85047462	85047481	85047462	+	High_confidence	18	18	51	2.190819	5.093661	chr16	85046674	85047999	LINE|L1|L1MD2	-	chr16	85047480	85081772	MSTRG.11425.3	+	85047480,85066899,85071782,85072924,85075843,85077424,85078414,85078924,85081314	85047719,85067400,85071882,85072998,85075914,85077632,85078455,85079003,85081772	0.803922
K562	chr7	107009258	107009268	107009267	-	High_confidence	7	7	13	0.558444	3.392747	chr7	107009150	107009472	SINE|Alu|AluY	+	chr7	106989702	107009375	MSTRG.26282.1	-	106989702,106990688,107009090	106989868,106995376,107009375	1.000000
K562	chr5	179811453	179811466	179811461	+	RAMPAGE_only	9	10	27	1.159845	4.180833	chr5	179811358	179811651	LTR|ERV1|MER61B	+	chr5	179807002	179838078	SQSTM1|NM_001142299.1	+	179807002,179811573,179822957,179823857,179824181,179825145,179833031,179833586,179836435	179807123,179811682,179823053,179824087,179824323,179825226,179833246,179833782,179838078	0.518519
K562	chr2	195448515	195448516	195448515	+	High_confidence	6	6	6	0.257743	2.584963	chr2	195448385	195448695	LTR|ERVL-MaLR|THE1D	+	chr2	195448531	195478925	AC104823.1|ENST00000413290.1	+	195448531,195455509,195458075,195478337	195448612,195455641,195458263,195478925	0.833333
K562	chr7	102973321	102973495	102973491	+	High_confidence	437	443	1366	58.679577	7.384123	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973521	102988856	MSTRG.26218.4	+	102973521,102978380,102986110,102988032,102988374	102973771,102978520,102986286,102988232,102988856	0.622255
K562	chr1	148279251	148279274	148279251	+	High_confidence	18	18	71	3.049963	5.117575	chr1	148279033	148279814	LINE|L1|L1MEc	+	chr1	148279274	148289326	MSTRG.1745.1	+	148279274,148287689	148279531,148289326	0.971831
K562	chr16	20674390	20674410	20674404	+	High_confidence	4	6	14	0.601401	3.182006	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.857143
K562	chr14	76258254	76258290	76258289	+	High_confidence	121	121	522	22.423674	6.148713	chr14	76257889	76258388	LTR|ERVL-MaLR|MLT1K	-	chr14	76258257	76501835	MSTRG.8423.16	+	76258257,76310715,76439340,76462544,76482015,76482597,76491446,76498213,76499862,76500694	76258434,76310916,76439750,76462661,76482126,76482759,76491716,76498621,76500066,76501835	0.749042
K562	chr3	101634731	101634758	101634747	-	RAMPAGE_only	56	93	360	15.464603	4.965862	chr3	101632599	101641508	LTR|ERV1|HERVS71-int	+	chr3	101620899	101638949	MSTRG.20148.1	-	101620899,101634341,101636696,101637169,101637574	101626411,101635284,101636774,101637238,101638949	0.969444
K562	chr22	47631707	47631787	47631750	+	High_confidence	9	10	110	4.725295	5.760830	chr22	47631336	47631805	LTR|ERVL|MLT2B1	-	chr22	47631689	47635624	AL117329.1|ENST00000426452.1	+	47631689,47635179	47631886,47635624	0.600000
K562	chr2	217842167	217842185	217842167	-	High_confidence	7	9	39	1.675332	4.195676	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.692308
K562	chr6	39941971	39941978	39941973	+	High_confidence	77	131	280	12.028025	6.399884	chr6	39941788	39942313	LTR|ERVL-MaLR|MLT1F1	+	chr6	39941968	39980151	MSTRG.24275.2	+	39941968,39947505,39948429,39963509,39980091	39942244,39947565,39948503,39963559,39980151	0.553571
K562	chr19	3062922	3062983	3062977	-	High_confidence	13	13	66	2.835177	4.816024	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.969697
K562	chr12	102313277	102313323	102313292	+	RAMPAGE_only	14	14	102	4.381638	5.607687	chr12	102307781	102313768	LINE|L1|L1PA2	-	chr12	102304354	102463491	LINC02456|ENST00000635615.1	+	102304354,102304631,102315310,102348882,102423070,102462727	102304448,102304756,102315490,102348932,102423180,102463491	0.637255
K562	chr6	82101679	82101690	82101686	-	RAMPAGE_only	3	4	13	0.558444	3.238901	chr6	82101303	82107312	LINE|L1|L1PA2	+	chr6	81845184	81933480	LINC02542|ENST00000418567.1	-	81845184,81928856,81933428	81845909,81928901,81933480	0.692308
K562	chr2	174547129	174547157	174547152	+	High_confidence	49	62	189	8.118917	6.708815	chr2	174547163	174547404	LTR|ERV1|LTR78	+	chr2	174547373	174665689	AC010894.3|ENST00000412835.1	+	174547373,174655497,174665176	174547477,174656285,174665689	0.544974
K562	chr8	9188998	9189021	9189020	+	High_confidence	109	169	405	17.397678	6.390904	chr8	9188663	9189149	LTR|ERV1|MER50B	+	chr8	9189020	9202858	AC022784.1|ENST00000649604.1	+	9189020,9189350,9198923,9202391	9189046,9189586,9198991,9202858	0.851852
K562	chr19	35309664	35309665	35309664	+	High_confidence	10	10	10	0.429572	2.521928	chr19	35309579	35309758	LTR|ERVL|LTR42	-	chr19	35309805	35312009	MAG|ENST00000593348.1	+	35309805,35310546,35311917	35310161,35310643,35312009	1.000000
K562	chr16	4434088	4434104	4434095	-	High_confidence	8	12	32	1.374631	4.478232	chr16	4433925	4434279	LTR|ERVL-MaLR|THE1C	-	chr16	4433201	4433387	AC012676.2|ENST00000619258.1	-	4433201	4433387	0.531250
K562	chr20	61964008	61964009	61964008	-	RAMPAGE_only	18	19	26	1.116888	4.546594	chr20	61963844	61964204	LTR|ERVL-MaLR|THE1B	-	chr20	61953468	61998187	TAF4|ENST00000474089.5	-	61953468,61997549,61998135	61953828,61997669,61998187	0.500000
K562	chr2	11681436	11681437	11681436	+	High_confidence	5	5	8	0.343658	2.521641	chr2	11681255	11681626	LTR|ERVL-MaLR|MSTA	+	chr2	11681459	11683323	AC106875.1|ENST00000455754.1	+	11681459,11682297	11681492,11683323	0.875000
K562	chr12	643627	643648	643627	-	High_confidence	10	15	38	1.632375	4.314334	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	565359	643636	NINJ2|ENST00000433832.2	-	565359,643510	566178,643636	0.710526
K562	chr16	2205780	2205855	2205788	+	High_confidence	51	52	481	20.662428	5.396453	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.970894
K562	chr21	19493472	19493507	19493472	-	High_confidence	14	19	48	2.061947	4.655341	chr21	19493426	19494814	LTR|ERV1|LTR12C	+	chr21	19276249	19494034	MSTRG.18263.2	-	19276249,19344476,19493424	19277418,19344565,19494034	0.729167
K562	chr3	165918034	165918035	165918034	-	High_confidence	479	509	543	23.325776	6.119100	chr3	165917730	165919011	LTR|ERV1|LTR12C	-	chr3	165912009	165918071	MSTRG.20656.1	-	165912009	165918071	0.974217
K562	chr12	57489549	57489556	57489549	+	High_confidence	3	4	7	0.300701	2.807355	chr12	57489594	57489834	SINE|MIR|MIR	+	chr12	57489529	57500430	MARS|ENST00000552371.1	+	57489529,57489895,57490206,57490537,57498419,57500320	57489558,57489971,57490379,57490644,57498623,57500430	0.857143
K562	chr1	28506277	28506431	28506277	+	High_confidence	15	20	110	4.725295	4.851612	chr1	28506187	28506484	SINE|Alu|AluSx	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.972727
K562	chr1	159022545	159022557	159022556	+	RAMPAGE_only	3	3	8	0.343658	2.521641	chr1	159022296	159022871	LTR|ERV1|LTR10C	-	chr1	159014680	159055124	IFI16|ENST00000448393.6	+	159014680,159015871,159016532,159018228,159020340,159032523,159051678,159053532,159054820	159014945,159015987,159016700,159018651,159020529,159032691,159052098,159053724,159055124	0.625000
K562	chr4	80125471	80125534	80125488	-	High_confidence	20	21	76	3.264750	5.700432	chr4	80125429	80125705	LINE|L2|L2a	+	chr4	80069435	80125454	ANTXR2|ENST00000506286.1	-	80069435,80071582,80097499,80097736,80104462,80121147,80125385	80069507,80071654,80097629,80097961,80104537,80121277,80125454	0.776316
K562	chr2	208572062	208572063	208572062	+	RAMPAGE_only	9	9	14	0.601401	3.546594	chr2	208571876	208572079	LTR|ERVL-MaLR|MLT1L	+	chr2	208542641	208825587	LOC101927960|NR_136588.1	+	208542641,208572012,208656825,208819551,208824194,208825398	208542991,208572167,208656989,208819655,208824350,208825587	0.642857
K562	chr5	22638934	22638967	22638966	-	RAMPAGE_only	2	2	6	0.257743	2.584963	chr5	22638791	22639080	SINE|Alu|AluY	+	chr5	21750672	22853341	CDH12|ENST00000504376.6	-	21750672,21755590,21760557,21764977,21783357,21802166,21816944,21842160,21854670,21975090,22078445,22212497,22505269,22853057	21752236,21755842,21760675,21765099,21783494,21802420,21817132,21842328,21854790,21975385,22078862,22212643,22505364,22853341	1.000000
K562	chr12	54296761	54296786	54296785	-	RAMPAGE_only	15	15	34	1.460546	4.477025	chr12	54296700	54296856	SINE|MIR|MIR3	+	chr12	54292106	54295779	NFE2|NM_006163.2	-	54292106,54295134,54295543	54293381,54295304,54295779	0.941176
K562	chr1	14419972	14419973	14419972	-	High_confidence	254	254	275	11.813238	4.814694	chr1	14419527	14421085	LTR|ERV1|LTR12C	-	chr1	14348954	14419971	MSTRG.336.1	-	14348954,14350868,14390685,14391458,14419493	14349378,14351025,14390751,14391578,14419971	0.952727
K562	chr13	108779506	108779564	108779532	+	High_confidence	25	31	191	8.204831	6.085986	chr13	108779268	108779937	LTR|ERVL|LTR41C	-	chr13	108779541	108785740	MYO16|ENST00000467639.1	+	108779541,108785634	108780052,108785740	0.842932
K562	chr19	17336685	17336727	17336685	+	High_confidence	28	33	74	3.178835	5.319828	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.878378
K562	chr19	38317198	38317209	38317201	-	RAMPAGE_only	10	11	52	2.233776	4.833270	chr19	38316960	38317170	DNA|hAT-Tip100|Arthur1C	-	chr19	38303559	38315966	YIF1B|NM_001039673.2	-	38303559,38307427,38307596,38308791,38308978,38309223,38309404,38315868	38305507,38307521,38307752,38308849,38309057,38309328,38309643,38315966	0.730769
K562	chr3	101637600	101637685	101637600	-	RAMPAGE_only	18	19	116	4.983039	5.705933	chr3	101632599	101641508	LTR|ERV1|HERVS71-int	+	chr3	101620899	101638949	MSTRG.20148.1	-	101620899,101634341,101636696,101637169,101637574	101626411,101635284,101636774,101637238,101638949	0.758621
K562	chr22	16611661	16611703	16611661	+	High_confidence	9	9	24	1.030974	4.136842	chr22	16611307	16611747	LTR|ERV1|LTR7Y	+	chr22	16612581	16615104	AP000547.3|ENST00000588548.1	+	16612581	16615104	0.750000
K562	chr8	9189258	9189272	9189258	+	High_confidence	15	16	35	1.503503	4.264578	chr8	9189149	9189462	SINE|Alu|AluYm1	-	chr8	9189347	9202858	AC022784.1|ENST00000417333.7	+	9189347,9198923,9202391	9189586,9198991,9202858	1.000000
K562	chr6	161216740	161216741	161216740	-	RAMPAGE_only	44	49	50	2.147862	4.937152	chr6	161216582	161216931	LTR|ERVL-MaLR|THE1A	-	chr6	161149204	161232236	AGPAT4|ENST00000436279.1	-	161149204,161153345,161154148,161165576,161166247,161232035	161149255,161153499,161154310,161165713,161166417,161232236	0.580000
K562	chr3	152243827	152243851	152243827	+	High_confidence	13	13	44	1.890118	4.245919	chr3	152243797	152244104	SINE|Alu|AluSx1	-	chr3	152243827	152300110	MBNL1|ENST00000477171.1	+	152243827,152244320,152299404	152244040,152244440,152300110	0.840909
K562	chr11	38337190	38337217	38337203	-	High_confidence	227	229	1125	48.326885	6.235131	chr11	38337000	38337314	SINE|Alu|AluY	+	chr11	38323834	38337214	MSTRG.4421.2	-	38323834,38325174,38336836	38324100,38325269,38337214	0.914667
K562	chr21	14762885	14762927	14762912	-	High_confidence	109	109	324	13.918143	6.556474	chr21	14762749	14762993	LINE|L2|L2b	+	chr21	14761709	14763090	AF127936.1|ENST00000435315.2	-	14761709,14762837	14762151,14763090	0.682099
K562	chr5	33297989	33298012	33297999	-	High_confidence	8	8	38	1.632375	4.516876	chr5	33297738	33298188	LTR|ERV1|MER48	-	chr5	33023054	33297910	AC010343.3|ENST00000510327.1	-	33023054,33263499,33297731	33023327,33263666,33297910	0.578947
K562	chr11	27220088	27220147	27220088	-	High_confidence	10	14	49	2.104904	3.443654	chr11	27219703	27225730	LINE|L1|L1PA2	+	chr11	27063019	27220086	BBOX1-AS1|ENST00000530430.1	-	27063019,27066491,27151049,27217316,27219686	27063060,27066662,27151152,27217480,27220086	0.795918
K562	chr3	10235136	10235143	10235136	+	High_confidence	29	30	45	1.933075	4.347191	chr3	10235017	10235226	LTR|ERVL-MaLR|MLT1O	-	chr3	10235127	10243672	MSTRG.19361.2	+	10235127,10238747,10242115	10235230,10239039,10243672	0.977778
K562	chrX	23953292	23953319	23953292	-	RAMPAGE_only	2	3	8	0.343658	2.807355	chrX	23953034	23953533	LTR|ERVL|LTR16C	+	chrX	23833347	23907940	APOO|NR_026545.2	-	23833347,23840312,23856301,23858641,23868592,23878914,23880844,23907693	23833510,23840377,23856382,23858733,23868688,23879034,23880952,23907940	0.500000
K562	chr5	104079901	104079939	104079918	+	High_confidence	35	43	119	5.111910	6.008909	chr5	104074362	104080381	LINE|L1|L1PA2	-	chr5	104079918	104105874	MSTRG.22926.2	+	104079918,104080907,104081879,104104173	104080124,104081041,104081947,104105874	0.764706
K562	chr6	39941891	39941906	39941905	+	High_confidence	11	11	19	0.816187	4.058814	chr6	39941788	39942313	LTR|ERVL-MaLR|MLT1F1	+	chr6	39941968	39980151	MSTRG.24275.2	+	39941968,39947505,39948429,39963509,39980091	39942244,39947565,39948503,39963559,39980151	0.736842
K562	chr1	1721672	1721702	1721675	-	High_confidence	7	7	18	0.773230	3.905765	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.944444
K562	chr10	102449836	102449845	102449836	+	High_confidence	27	27	128	5.498526	5.598193	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.851562
K562	chr2	223724059	223724060	223724059	-	High_confidence	5	8	8	0.343658	2.807355	chr2	223723885	223724514	LTR|ERV1|LTR9	-	chr2	223704543	223724046	MSTRG.17303.1	-	223704543,223720872,223723857	223705355,223720994,223724046	0.500000
K562	chr3	108125046	108125048	108125046	+	High_confidence	4	7	11	0.472530	3.459432	chr3	108124858	108125222	LTR|ERVL-MaLR|THE1C	+	chr3	108125820	108138610	LINC01215|NR_110028.1	+	108125820,108135143,108136313	108125908,108135350,108138610	0.818182
K562	chr20	18794077	18794086	18794085	+	High_confidence	55	55	113	4.854167	3.740723	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.991150
K562	chr11	3380960	3380961	3380960	+	High_confidence	107	111	126	5.412611	6.161660	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380992	3398090	MSTRG.4089.5	+	3380992,3383461,3384166,3384898,3397116,3397450	3381044,3383546,3384284,3395939,3397406,3398090	0.698413
K562	chr13	83102345	83102383	83102345	-	High_confidence	70	73	415	17.827251	5.863437	chr13	83102229	83102468	SINE|Alu|AluY	+	chr13	83062047	83102384	MSTRG.7518.1	-	83062047,83099292,83102137	83063313,83099403,83102384	0.783133
K562	chr18	55893202	55893258	55893240	+	High_confidence	10	10	57	2.448562	4.373024	chr18	55887412	55893439	LINE|L1|L1PA3	-	chr18	55893037	56023462	AC009271.1|ENST00000589440.1	+	55893037,56017727,56023401	55893442,56017779,56023462	0.684211
K562	chr19	48753676	48753677	48753676	-	High_confidence	100	101	101	4.338680	5.755916	chr19	48753519	48753902	LTR|ERVK|LTR13A	-	chr19	48748010	48753660	FUT1|ENST00000645652.1	-	48748010,48752489,48752891,48753324,48753647	48751283,48752725,48753122,48753563,48753660	0.970297
K562	chr16	90187182	90187183	90187182	+	RAMPAGE_only	44	44	45	1.933075	3.690609	chr16	90186983	90187364	LTR|ERVL-MaLR|THE1C	+	chr16	90185996	90216935	LINC02193|ENST00000568418.1	+	90185996,90194120,90214681,90215292	90186154,90194225,90214831,90216935	0.977778
K562	chr4	31997378	31997379	31997378	+	High_confidence	1406	1470	1712	73.542779	4.010113	chr4	31996206	31997789	LTR|ERV1|LTR12C	+	chr4	31997378	32155406	LOC102723828|NR_125936.1	+	31997378,32146052,32155313	31997822,32146267,32155406	0.982477
K562	chr8	48518081	48518082	48518081	-	High_confidence	5	5	8	0.343658	3.000000	chr8	48517923	48518278	LTR|ERVL-MaLR|THE1A	-	chr8	48515851	48517089	AC026904.1|ENST00000521359.1	-	48515851,48517057	48516356,48517089	1.000000
K562	chr2	164993855	164993878	164993877	+	RAMPAGE_only	21	21	49	2.104904	5.150324	chr2	164993632	164993938	LTR|ERV1|LTR9	-	chr2	164992156	165208261	AC019197.1|ENST00000629817.2	+	164992156,164993460,165091119,165130044,165139598,165194895,165208112	164992168,164993640,165091299,165130204,165139709,165195083,165208261	0.795918
K562	chrX	31863084	31863101	31863084	-	RAMPAGE_only	7	7	13	0.558444	2.918296	chrX	31863061	31863362	SINE|Alu|AluYh3	+	chrX	31119220	31875373	DMD|ENST00000358062.6	-	31119220,31134101,31146290,31147274,31169442,31172347,31173538,31178668,31180369,31182737,31203960,31206581,31209497,31223046,31260954,31323597,31348555,31444480,31478105,31478982,31496787,31507280,31627672,31657989,31679374,31729630,31773959,31819974,31836717,31875187	31121930,31134194,31146414,31147518,31169601,31172413,31173604,31178805,31180481,31182904,31204118,31206667,31209699,31223121,31261016,31323658,31348634,31444627,31478374,31479103,31496944,31507453,31627862,31658144,31679586,31729748,31774192,31820083,31836819,31875373	0.692308
K562	chr21	33931404	33931450	33931449	+	High_confidence	4	4	19	0.816187	3.471354	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.789474
K562	chr2	8986454	8986466	8986454	-	RAMPAGE_only	4	5	14	0.601401	3.039149	chr2	8986293	8986577	SINE|Alu|AluJb	+	chr2	8860694	9003658	MBOAT2|ENST00000486484.5	-	8860694,8862270,8862589,8864169,8868445,8873107,8877029,8882510,8888017,8908620,8943186,8958496,9003539	8860764,8862322,8862722,8864234,8868549,8873300,8877213,8882565,8888073,8908716,8943264,8958642,9003658	0.642857
K562	chr22	23536877	23536878	23536877	+	High_confidence	16	16	17	0.730273	3.500000	chr22	23536061	23537026	LTR|ERVK|LTR5_Hs	+	chr22	23536880	23539480	PCAT14|ENST00000629869.1	+	23536880,23538760	23537136,23539480	0.941176
K562	chr14	19289874	19289875	19289874	-	RAMPAGE_only	7	7	9	0.386615	2.750000	chr14	19289707	19290351	DNA|TcMar-Tigger|MER44C	+	chr14	19244903	19269380	AL589743.7|ENST00000649331.1	-	19244903,19245664,19263182,19269148	19244980,19245863,19263321,19269380	0.777778
K562	chr8	2727097	2727103	2727097	+	High_confidence	3	4	11	0.472530	2.913977	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2726929	2926569	MSTRG.26841.1	+	2726929,2804585,2834348,2834771,2836783,2837729,2919186,2925764,2926149	2727493,2804709,2834577,2834876,2836918,2837764,2919318,2925811,2926569	0.909091
K562	chr3	163499864	163499865	163499864	+	High_confidence	1987	1988	2039	87.589793	5.434450	chr3	163498849	163500000	LTR|ERV1|LTR12C	+	chr3	163499866	163520546	MSTRG.20653.1	+	163499866,163513393,163518872	163500432,163513546,163520546	0.972536
K562	chr1	22428870	22428871	22428870	+	High_confidence	6	6	9	0.386615	2.725481	chr1	22428699	22428944	LTR|ERVL-MaLR|MLT1J	+	chr1	22428837	22511763	ZBTB40|ENST00000650433.1	+	22428837,22489879,22491399,22506048,22508000,22508529,22509099,22511178,22511675	22429014,22490645,22491533,22506241,22508137,22508731,22509233,22511347,22511763	0.777778
K562	chr12	122064308	122064376	122064308	+	High_confidence	87	88	370	15.894175	6.484400	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063408	122068558	MSTRG.6929.3	+	122063408,122068027,122068288	122064682,122068191,122068558	0.756757
K562	chr19	49928465	49928482	49928481	+	High_confidence	6	11	21	0.902102	3.576618	chr19	49928235	49928532	SINE|Alu|AluY	+	chr19	49928467	49933935	MSTRG.15054.1	+	49928467,49929242,49930731,49932421	49928615,49929400,49931028,49933935	0.523810
K562	chrX	49148713	49148714	49148713	-	RAMPAGE_only	203	207	217	9.321719	5.456487	chrX	49148651	49148812	LTR|ERV1|LTR2C	-	chrX	49138641	49150577	MSTRG.29376.3	-	49138641,49148383,49150432	49145519,49149165,49150577	0.880184
K562	chr5	85647805	85647835	85647822	-	High_confidence	36	41	178	7.646387	6.084755	chr5	85647706	85648160	LTR|ERV1|LTR71A	-	chr5	85619348	85647863	MSTRG.22764.1	-	85619348,85629687,85633293,85635203,85647484	85620193,85629814,85633429,85635252,85647863	0.848315
K562	chr20	3160208	3160249	3160248	-	High_confidence	4	5	19	0.816187	3.086049	chr20	3160065	3160391	SINE|Alu|AluSx	+	chr20	3107572	3160196	UBOX5|ENST00000348031.6	-	3107572,3121383,3123311,3159765	3110314,3122584,3123406,3160196	0.842105
K562	chr16	20674497	20674498	20674497	+	High_confidence	75	75	86	3.694322	4.979376	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.906977
K562	chr6	68040678	68040709	68040689	+	High_confidence	52	55	211	9.063976	5.772127	chr6	68040221	68040931	LTR|ERV1|LTR30	-	chr6	68040289	68083574	AL646090.2|ENST00000647954.1	+	68040289,68040840,68082551	68040598,68040941,68083574	0.516588
K562	chr6	28398835	28398849	28398848	-	High_confidence	9	9	21	0.902102	3.536887	chr6	28398635	28398947	SINE|Alu|AluY	+	chr6	28379218	28399731	ZSCAN12|ENST00000396827.3	-	28379218,28382190,28390595,28392901,28398003,28399656	28380871,28382609,28391742,28393046,28398473,28399731	0.666667
K562	chr3	157533600	157533641	157533600	-	High_confidence	83	85	139	5.971055	6.011255	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157460214	157533606	VEPH1|ENST00000487753.5	-	157460214,157470313,157495211,157533512	157460355,157470529,157495506,157533606	0.827338
K562	chr4	172156075	172156093	172156090	+	RAMPAGE_only	8	8	28	1.202802	4.106377	chr4	172155984	172156360	LTR|ERV1|MER48	-	chr4	172052444	173040100	GALNTL6|ENST00000508122.5	+	172052444,172229655,172311613,172348522,172809360,172813539,172882789,172931160,172952036,173009177,173021475,173039932	172052531,172229764,172311752,172348689,172809546,172813723,172882907,172931268,172952258,173009294,173021625,173040100	0.821429
K562	chr7	139542545	139542571	139542570	+	High_confidence	34	58	148	6.357670	5.652605	chr7	139542499	139542588	LTR|ERVL-MaLR|MLT1J	-	chr7	139542535	139544985	MSTRG.26560.4	+	139542535,139544230	139542748,139544985	0.804054
K562	chr2	74148407	74148443	74148407	+	High_confidence	2	2	11	0.472530	2.913977	chr2	74148357	74148636	LINE|L2|L2	-	chr2	74148044	74149988	BOLA3-AS1|ENST00000533563.1	+	74148044,74148349,74148697	74148223,74148478,74149988	0.909091
K562	chr7	77990385	77990437	77990425	+	High_confidence	3	3	21	0.902102	3.884184	chr7	77987877	77991087	LINE|L1|L1PBa1	-	chr7	77990383	77994942	AC004990.1|ENST00000431722.1	+	77990383,77990983,77994871	77990677,77991182,77994942	0.571429
K562	chr20	50130101	50130121	50130101	-	RAMPAGE_only	5	5	20	0.859145	3.826875	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.950000
K562	chr1	167937013	167937034	167937013	-	High_confidence	3	4	14	0.601401	3.546594	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167918067	167937040	MPC2|ENST00000271373.8	-	167918067,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937040	0.928571
K562	chr2	78542001	78542039	78542038	-	High_confidence	24	26	60	2.577434	4.937908	chr2	78541256	78543178	LINE|L1|L1PBa1	+	chr2	78456087	78542042	MSTRG.16132.3	-	78456087,78485793,78541571	78456731,78485852,78542042	0.900000
K562	chr16	4355592	4355593	4355592	-	High_confidence	630	631	631	27.106013	5.657550	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.968304
K562	chr19	28607320	28607361	28607360	+	High_confidence	12	12	26	1.116888	4.483856	chr19	28607295	28607441	LTR|ERV1|HERVE-int	+	chr19	28606687	28615229	MSTRG.14552.4	+	28606687,28612438	28612061,28615229	0.961538
K562	chr1	167937103	167937134	167937133	+	High_confidence	4	4	14	0.601401	3.093069	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167937152	167993330	DCAF6|ENST00000455334.5	+	167937152,167951799,167966628,167974829,167987494,167991203,167993225	167937252,167951861,167966721,167975015,167987608,167991339,167993330	0.500000
K562	chrX	31862899	31862939	31862911	-	RAMPAGE_only	26	26	76	3.264750	5.483828	chrX	31862739	31863061	LTR|ERV1|MER48	+	chrX	31119220	31875373	DMD|ENST00000358062.6	-	31119220,31134101,31146290,31147274,31169442,31172347,31173538,31178668,31180369,31182737,31203960,31206581,31209497,31223046,31260954,31323597,31348555,31444480,31478105,31478982,31496787,31507280,31627672,31657989,31679374,31729630,31773959,31819974,31836717,31875187	31121930,31134194,31146414,31147518,31169601,31172413,31173604,31178805,31180481,31182904,31204118,31206667,31209699,31223121,31261016,31323658,31348634,31444627,31478374,31479103,31496944,31507453,31627862,31658144,31679586,31729748,31774192,31820083,31836819,31875373	0.789474
K562	chr11	59944210	59944224	59944223	+	RAMPAGE_only	12	16	31	1.331674	4.349192	chr11	59944029	59944317	LTR|ERVL|LTR16A	-	chr11	59938431	59957480	OOSP1|ENST00000646685.1	+	59938431,59942846,59945168,59947732,59957194	59938530,59943028,59945266,59947862,59957480	0.870968
K562	chr1	112936000	112936010	112936000	-	High_confidence	10	10	22	0.945059	3.170818	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	0.954545
K562	chr20	31692096	31692097	31692096	-	RAMPAGE_only	11	11	11	0.472530	2.663533	chr20	31692031	31692220	DNA|hAT-Charlie|MER5A	+	chr20	31664451	31722330	BCL2L1|NR_134257.1	-	31664451,31666990,31721654	31666086,31667147,31722330	1.000000
K562	chr8	2727247	2727272	2727271	+	High_confidence	43	44	170	7.302729	6.170528	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.805882
K562	chr11	116786539	116786573	116786572	-	High_confidence	5	6	16	0.687316	3.006239	chr11	116786570	116786754	SINE|MIR|MIR3	+	chr11	116782157	116785843	ZPR1|ENST00000449430.1	-	116782157,116782918,116783529,116784377,116784858,116785098,116785513,116785795	116782244,116783029,116783619,116784498,116784921,116785146,116785636,116785843	0.937500
K562	chr7	105600858	105600892	105600891	-	High_confidence	230	237	488	20.963129	5.588003	chr7	105600681	105601093	LTR|ERVL-MaLR|THE1D	-	chr7	105567101	105600875	EFCAB10|ENST00000490493.1	-	105567101,105569202,105569406,105591304,105600763	105567490,105569290,105569571,105591391,105600875	0.895492
K562	chr2	167900738	167900784	167900750	-	RAMPAGE_only	11	11	30	1.288717	4.615061	chr2	167900210	167902016	LINE|L1|L1M4a1	+	chr2	167815052	167941144	MSTRG.16790.3	-	167815052,167869739,167870798,167889322,167900731,167941108	167815231,167869980,167870864,167892010,167900782,167941144	0.800000
K562	chr3	101636873	101636878	101636873	-	RAMPAGE_only	6	6	11	0.472530	2.721928	chr3	101632599	101641508	LTR|ERV1|HERVS71-int	+	chr3	101620899	101638949	MSTRG.20148.1	-	101620899,101634341,101636696,101637169,101637574	101626411,101635284,101636774,101637238,101638949	0.727273
K562	chr19	8379598	8379599	8379598	+	High_confidence	381	390	395	16.968106	6.299821	chr19	8379160	8379914	LTR|ERV1|LTR12D	+	chr19	8379608	8389092	MSTRG.14089.1	+	8379608,8386163,8388186	8379977,8387301,8389092	0.962025
K562	chr3	185496842	185496843	185496842	-	RAMPAGE_only	9	9	12	0.515487	2.550341	chr3	185496688	185496811	SINE|MIR|MIRc	-	chr3	185480159	185498985	TMEM41A|ENST00000475480.5	-	185480159,185481217,185494622,185495153,185496827,185498842	185480502,185481311,185494761,185495315,185496981,185498985	0.916667
K562	chr5	79784478	79784499	79784486	+	RAMPAGE_only	6	6	15	0.644358	3.039149	chr5	79778884	79784938	LINE|L1|L1HS	-	chr5	79738141	79800240	CMYA5|ENST00000506603.5	+	79738141,79743826,79745221,79747090,79752675,79758752,79761810,79788970,79790969,79793436,79799369	79739403,79743922,79745455,79747113,79752794,79758902,79763209,79789104,79791069,79793610,79800240	0.733333
K562	chr12	6626752	6626838	6626758	-	RAMPAGE_only	17	21	77	3.307707	5.203484	chr12	6626594	6626983	LINE|L2|L2c	+	chr12	6618834	6631649	LPAR5|NM_001142961.1	-	6618834,6631584	6621464,6631649	0.935065
K562	chr1	146934494	146934527	146934526	-	High_confidence	5	5	20	0.859145	3.932138	chr1	146934256	146934876	LTR|ERV1|MER51D	-	chr1	146927117	146934971	MSTRG.1708.1	-	146927117,146934253,146934877	146933871,146934397,146934971	0.900000
K562	chr15	28611565	28611580	28611565	+	High_confidence	4	4	11	0.472530	3.095795	chr15	28611536	28611817	SINE|Alu|AluSx3	-	chr15	28612141	28633274	HERC2P9|ENST00000529537.1	+	28612141,28618218,28618523,28629265,28632636,28633191	28612173,28618378,28618655,28629441,28632807,28633274	1.000000
K562	chr3	12994717	12994740	12994717	-	High_confidence	3	3	17	0.730273	4.000000	chr3	12994635	12994703	SINE|MIR|MIRc	-	chr3	12908348	12994384	IQSEC1|ENST00000648386.1	-	12908348,12909272,12911628,12913427,12915103,12915593,12920429,12922119,12924580,12935447,12941570,12994080	12908525,12909434,12911728,12913553,12915133,12915733,12920596,12922242,12924742,12936697,12941865,12994384	0.764706
K562	chr2	65819107	65819149	65819115	-	High_confidence	6	7	19	0.816187	3.683542	chr2	65818787	65819322	LINE|L2|L2-3_Crp	+	chr2	65810776	65819295	MSTRG.15947.1	-	65810776,65818879	65810918,65819295	0.947368
K562	chr12	74509541	74509542	74509541	-	High_confidence	13	13	14	0.601401	3.546594	chr12	74503521	74509541	LINE|L1|L1PA3	-	chr12	74509183	74509532	MSTRG.6480.1	-	74509183	74509532	0.571429
K562	chr1	246187140	246187149	246187140	-	RAMPAGE_only	3	3	9	0.386615	2.947703	chr1	246187116	246187146	SINE|Alu|Alu	+	chr1	245858561	246193727	SMYD3|ENST00000391836.3	-	245858561,245863798,245915529,245927930,245929869,246186742,246193674	245858670,245863886,245915640,245928033,245929937,246186942,246193727	0.666667
K562	chr1	32816766	32816767	32816766	+	High_confidence	5	5	7	0.300701	2.584963	chr1	32816717	32816919	LINE|L2|L2c	+	chr1	32816766	32826489	S100PBP|ENST00000530710.5	+	32816766,32825312,32826097	32816982,32825429,32826489	0.714286
K562	chr8	143281653	143281687	143281669	-	High_confidence	406	407	1213	52.107121	4.403706	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280165	143281660	MINCR|ENST00000517411.1	-	143280165,143280881,143281481	143280515,143280997,143281660	0.835120
K562	chr7	93591465	93591466	93591465	+	High_confidence	9	11	14	0.601401	2.653544	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591296	93809231	MSTRG.26057.1	+	93591296,93807203	93591771,93809231	0.928571
K562	chr7	154928503	154928504	154928503	+	High_confidence	7	7	9	0.386615	3.169925	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.777778
K562	chr6	122482061	122482075	122482061	+	RAMPAGE_only	421	432	732	31.444693	7.060551	chr6	122481961	122482259	SINE|Alu|AluYe5	-	chr6	122471930	122725890	PKIB|ENST00000392491.6	+	122471930,122477850,122585920,122633282,122675077,122717786,122725127	122472041,122477939,122586007,122633367,122675144,122717963,122725890	0.592896
K562	chr8	101988057	101988071	101988070	-	High_confidence	97	98	244	10.481564	6.194958	chr8	101987872	101988184	SINE|Alu|AluYk2	+	chr8	101688104	101988063	MSTRG.27566.5	-	101688104,101692790,101719251,101887140,101915808,101987835	101689406,101692896,101719648,101887227,101915858,101988063	0.786885
K562	chr9	39810061	39810082	39810081	-	High_confidence	2	2	8	0.343658	2.521641	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39777349	39810097	GLIDR|ENST00000638724.1	-	39777349,39778893,39809485,39809730	39778566,39778944,39809615,39810097	0.625000
K562	chr2	167941179	167941180	167941179	-	High_confidence	1447	1558	1696	72.855463	8.253038	chr2	167941032	167941369	LTR|ERVL-MaLR|THE1A	-	chr2	167928308	167941144	MSTRG.16790.7	-	167928308,167939242,167940715	167936112,167939326,167941144	0.517689
K562	chr7	39013317	39013441	39013391	+	High_confidence	15	16	138	5.928098	5.568529	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.681159
K562	chr19	12965139	12965148	12965147	+	High_confidence	13	14	24	1.030974	3.621654	chr19	12965022	12965417	LINE|L2|L2	-	chr19	12965158	12974524	DAND5|ENST00000585548.1	+	12965158,12969509,12970450,12973388	12965193,12969984,12970535,12974524	0.750000
K562	chr15	80059918	80059933	80059918	+	High_confidence	102	109	295	12.672383	4.435464	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.959322
K562	chr15	34657735	34657942	34657941	+	High_confidence	216	234	2093	89.909484	6.221771	chr15	34657492	34658143	LINE|L2|L2c	-	chr15	34657646	34670512	MSTRG.9005.2	+	34657646,34667376,34670117	34658007,34667494,34670512	0.853798
K562	chr1	147517874	147517876	147517874	-	High_confidence	39	57	63	2.706306	4.472585	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147258884	147517875	LINC00624|ENST00000619867.4	-	147258884,147384667,147408589,147514337,147515520,147517442	147260976,147384863,147408689,147514448,147515676,147517875	0.888889
K562	chr14	101731413	101731433	101731413	+	High_confidence	32	32	68	2.921092	4.824644	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.882353
K562	chr11	86109481	86109499	86109498	+	High_confidence	2162	2185	6979	299.798513	5.324513	chr11	86109131	86109521	LTR|ERVL-MaLR|MSTA	-	chr11	86109433	86110790	MSTRG.5107.1	+	86109433	86110790	0.979653
K562	chr17	82081601	82081607	82081606	-	High_confidence	5	5	11	0.472530	3.121928	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.545455
K562	chr1	28681084	28681085	28681084	+	RAMPAGE_only	12	12	13	0.558444	3.584963	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	0.923077
K562	chr22	39320306	39320353	39320339	-	High_confidence	7	7	32	1.374631	4.256565	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.937500
K562	chr3	101632367	101632370	101632367	+	High_confidence	29	34	46	1.976033	4.021529	chr3	101632044	101632597	LTR|ERV1|LTR6A	+	chr3	101632399	101642763	MSTRG.20150.1	+	101632399,101636511	101632805,101642763	0.934783
K562	chr8	85839671	85839705	85839704	+	High_confidence	36	38	59	2.534477	5.218512	chr8	85839524	85839864	LTR|ERVL-MaLR|THE1B	+	chr8	85839704	85908613	AC100801.1|ENST00000517368.1	+	85839704,85885934,85889578,85908312	85839785,85885994,85889653,85908613	0.576271
K562	chr1	212234676	212234700	212234699	-	High_confidence	2	2	7	0.300701	2.584963	chr1	212234586	212234675	DNA|hAT-Charlie|Charlie24	-	chr1	212225277	212234736	LOC101929541|NR_125983.1	-	212225277,212230202,212234502	212225513,212230259,212234736	0.714286
K562	chr19	28544686	28544715	28544713	-	High_confidence	84	159	261	11.211837	6.265017	chr19	28544654	28545065	LTR|ERVL-MaLR|MLT1K	+	chr19	28435387	28544724	MSTRG.14547.1	-	28435387,28436915,28437484,28466401,28544624	28436815,28437134,28437718,28466780,28544724	0.747126
K562	chr7	100082573	100082582	100082573	-	High_confidence	27	30	101	4.338680	4.723563	chr7	100082301	100082600	SINE|Alu|AluSx1	+	chr7	100069970	100082548	ZNF3|NM_001278287.1	-	100069970,100075134,100075541,100077302,100079535,100082300	100072212,100075261,100075630,100077433,100079572,100082548	0.653465
K562	chr21	22190703	22190717	22190716	-	High_confidence	203	208	670	28.781345	5.224044	chr21	22190554	22190821	SINE|Alu|AluY	+	chr21	22087205	22190718	MSTRG.18272.4	-	22087205,22096528,22120720,22190494	22092638,22096586,22120892,22190718	0.623881
K562	chr1	30731737	30731752	30731737	+	High_confidence	2	2	6	0.257743	2.584963	chr1	30731667	30732002	LINE|L2|L2b	+	chr1	30731868	30738539	MSTRG.648.1	+	30731868,30732804,30738326	30732146,30732984,30738539	1.000000
K562	chr2	96637945	96637973	96637945	-	High_confidence	5	5	23	0.988016	3.936180	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.695652
K562	chr6	67889099	67889169	67889168	-	High_confidence	4167	4533	12231	525.409889	7.372486	chr6	67889061	67889473	LTR|ERV1|LTR7C	-	chr6	67876872	67889154	MSTRG.24450.2	-	67876872,67886967,67888910	67883876,67887398,67889154	0.708119
K562	chr16	84139249	84139303	84139277	-	RAMPAGE_only	6	6	26	1.116888	4.099471	chr16	84139153	84139637	LTR|ERVL-MaLR|MLT1D	+	chr16	84130318	84144438	HSDL1|ENST00000568857.5	-	84130318,84131101,84135543,84144290	84130431,84131327,84135605,84144438	0.653846
K562	chr4	81154221	81154222	81154221	-	High_confidence	4	4	6	0.257743	2.584963	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.666667
K562	chr4	154464757	154464819	154464757	-	RAMPAGE_only	20	21	89	3.823194	4.890602	chr4	154464538	154464935	LINE|L1|L1MEg	+	chr4	154259410	154458027	MSTRG.21987.4	-	154259410,154269899,154297850,154304668,154305096,154315747,154320378,154322330,154328092,154329522,154332477,154334867,154366209,154377252,154457440	154259756,154270013,154298708,154304878,154305231,154315987,154321222,154322488,154328192,154329710,154333494,154335104,154366441,154377444,154458027	0.887640
K562	chr5	53118873	53118874	53118873	-	RAMPAGE_only	10	10	10	0.429572	3.121928	chr5	53118691	53119192	LTR|ERV1|LTR28C	-	chr5	53100452	53110063	MOCS2|ENST00000527216.5	-	53100452,53101358,53102096,53107076,53108521,53109984	53100534,53101509,53102224,53107221,53108643,53110063	0.800000
K562	chr13	51979016	51979020	51979016	-	High_confidence	3	7	12	0.515487	2.845351	chr13	51978764	51979263	LTR|ERVL-MaLR|MLT1G1	-	chr13	51958363	51978991	ATP7B|ENST00000482841.6	-	51958363,51970491,51973934,51978819	51958544,51970749,51975168,51978991	0.916667
K562	chrX	49148753	49148857	49148775	-	RAMPAGE_only	40	41	132	5.670354	5.619312	chrX	49148651	49148812	LTR|ERV1|LTR2C	-	chrX	49138641	49150577	MSTRG.29376.3	-	49138641,49148383,49150432	49145519,49149165,49150577	0.916667
K562	chr1	32816725	32816726	32816725	+	High_confidence	11	12	13	0.558444	3.251629	chr1	32816717	32816919	LINE|L2|L2c	+	chr1	32816766	32826489	S100PBP|ENST00000530710.5	+	32816766,32825312,32826097	32816982,32825429,32826489	0.538462
K562	chr4	48255295	48255303	48255302	-	RAMPAGE_only	19	19	39	1.675332	4.243628	chr4	48255094	48255505	LTR|ERVL-MaLR|MLT1K	-	chr4	48135782	48269797	TEC|NM_003215.2	-	48135782,48138664,48138903,48141354,48145078,48145407,48146324,48149556,48150862,48156679,48163701,48167777,48168585,48170247,48171367,48176081,48228476,48269751	48137499,48138822,48139022,48141419,48145295,48145579,48146399,48149690,48150942,48156734,48163767,48167953,48168626,48170376,48171449,48176186,48228659,48269797	0.769231
K562	chr19	57820512	57820513	57820512	+	High_confidence	7	7	10	0.429572	2.725481	chr19	57820085	57820814	LTR|ERV1|LTR8	-	chr19	57819805	57858911	AC010522.1|ENST00000598031.1	+	57819805,57856103,57858575	57819945,57856233,57858911	0.600000
K562	chr19	28606727	28606728	28606727	+	High_confidence	4169	4187	5552	238.498545	7.518080	chr19	28606629	28606838	LTR|ERV1|LTR2	+	chr19	28606687	28615229	MSTRG.14552.4	+	28606687,28612438	28612061,28615229	0.989553
K562	chr3	193656716	193656757	193656716	+	RAMPAGE_only	8	8	23	0.988016	3.788755	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193648765	193659514	OPA1|ENST00000482865.1	+	193648765,193654861,193657079,193658886,193659481	193648871,193655027,193657232,193658995,193659514	0.739130
K562	chr1	65481101	65481144	65481101	-	High_confidence	42	42	201	8.634403	6.601759	chr1	65480934	65481330	LTR|ERVL-MaLR|MLT1B	-	chr1	65459053	65481176	MSTRG.1189.1	-	65459053,65478853,65481011	65468258,65479157,65481176	0.651741
K562	chrX	31863226	31863259	31863258	-	RAMPAGE_only	37	37	142	6.099927	5.498383	chrX	31863061	31863362	SINE|Alu|AluYh3	+	chrX	31119220	31875373	DMD|ENST00000358062.6	-	31119220,31134101,31146290,31147274,31169442,31172347,31173538,31178668,31180369,31182737,31203960,31206581,31209497,31223046,31260954,31323597,31348555,31444480,31478105,31478982,31496787,31507280,31627672,31657989,31679374,31729630,31773959,31819974,31836717,31875187	31121930,31134194,31146414,31147518,31169601,31172413,31173604,31178805,31180481,31182904,31204118,31206667,31209699,31223121,31261016,31323658,31348634,31444627,31478374,31479103,31496944,31507453,31627862,31658144,31679586,31729748,31774192,31820083,31836819,31875373	0.542254
K562	chr15	65300634	65300635	65300634	-	High_confidence	131	132	132	5.670354	4.639431	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65266576	65300618	PARP16|ENST00000558873.1	-	65266576,65270934,65282546,65300196	65266768,65271072,65282632,65300618	0.916667
K562	chr6	43025288	43025292	43025291	+	High_confidence	6	6	13	0.558444	2.873141	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.923077
K562	chr1	23777954	23777983	23777954	-	High_confidence	16	18	48	2.061947	4.884168	chr1	23777763	23777954	SINE|MIR|MIRb	-	chr1	23760381	23778287	ELOA-AS1|ENST00000427796.5	-	23760381,23772110,23772267,23778198	23761151,23772166,23772426,23778287	0.562500
K562	chr10	104254263	104254275	104254263	+	High_confidence	4	4	10	0.429572	2.921928	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254193	104267464	GSTO1|NM_001191003.1	+	104254193,104255162,104259575,104262978,104266083,104267251	104254499,104255271,104259798,104263077,104266190,104267464	0.900000
K562	chr17	27576612	27576619	27576612	+	High_confidence	16	16	29	1.245760	4.235926	chr17	27576556	27576810	DNA|TcMar-Tigger|Tigger7	-	chr17	27577455	27585960	KSR1|ENST00000579399.1	+	27577455,27582645,27585656	27577639,27583105,27585960	0.862069
K562	chr6	67887324	67887361	67887360	-	RAMPAGE_only	71	72	150	6.443585	4.987080	chr6	67881436	67888662	LTR|ERV1|HERVH-int	-	chr6	67876872	67889154	MSTRG.24450.2	-	67876872,67886967,67888910	67883876,67887398,67889154	0.886667
K562	chr9	136231823	136231844	136231843	-	RAMPAGE_only	4	4	12	0.515487	2.594907	chr9	136231694	136231827	SINE|MIR|MIRc	-	chr9	136211263	136224877	QSOX2|ENST00000455222.1	-	136211263,136215153,136216599,136218678,136219029,136224006,136224860	136211452,136215304,136216722,136218808,136219164,136224112,136224877	0.833333
K562	chr7	8303722	8303725	8303724	+	High_confidence	5	8	12	0.515487	3.084963	chr7	8298113	8304140	LINE|L1|L1PA3	-	chr7	8303753	8340523	AC007128.2|ENST00000606016.1	+	8303753,8340382	8304155,8340523	0.750000
K562	chr7	107009334	107009348	107009347	-	High_confidence	369	373	609	26.160954	5.731090	chr7	107009150	107009472	SINE|Alu|AluY	+	chr7	106989702	107009375	MSTRG.26282.1	-	106989702,106990688,107009090	106989868,106995376,107009375	0.939245
K562	chr7	28598242	28598243	28598242	+	RAMPAGE_only	117	118	134	5.756269	5.978408	chr7	28598047	28598393	LTR|ERVL-MaLR|THE1A	+	chr7	28609060	28809317	CREB5|ENST00000426500.5	+	28609060,28718752,28724221,28804198,28809186	28609120,28718879,28724332,28804522,28809317	0.791045
K562	chr19	35309697	35309719	35309718	+	High_confidence	4	4	13	0.558444	3.084963	chr19	35309579	35309758	LTR|ERVL|LTR42	-	chr19	35309805	35312009	MAG|ENST00000593348.1	+	35309805,35310546,35311917	35310161,35310643,35312009	0.769231
K562	chr5	38290974	38291002	38291001	-	High_confidence	15	15	66	2.835177	5.341901	chr5	38290799	38291100	SINE|Alu|AluY	+	chr5	38282263	38290986	EGFLAM-AS4|ENST00000512496.1	-	38282263,38283922,38285688,38290599	38282601,38284103,38286361,38290986	1.000000
K562	chr1	146934408	146934426	146934417	-	High_confidence	28	28	104	4.467552	6.163187	chr1	146934256	146934876	LTR|ERV1|MER51D	-	chr1	146927117	146934971	MSTRG.1708.1	-	146927117,146934253,146934877	146933871,146934397,146934971	0.701923
K562	chr14	30474417	30474498	30474417	-	High_confidence	9	9	60	2.577434	4.563790	chr14	30474044	30480062	LINE|L1|L1PA3	+	chr14	30411860	30474501	MSTRG.7889.1	-	30411860,30418687,30473521,30474000	30412600,30418812,30473599,30474501	0.833333
K562	chrX	2502850	2502860	2502856	-	RAMPAGE_only	6	6	16	0.687316	3.272906	chrX	2502799	2503215	LTR|ERV1|MER41D	+	chrX	2486413	2500967	ZBED1|NM_001171136.1	-	2486413,2500816	2490772,2500967	0.812500
K562	chr12	102313586	102313606	102313586	+	RAMPAGE_only	3	3	9	0.386615	2.750000	chr12	102307781	102313768	LINE|L1|L1PA2	-	chr12	102304354	102463491	LINC02456|ENST00000635615.1	+	102304354,102304631,102315310,102348882,102423070,102462727	102304448,102304756,102315490,102348932,102423180,102463491	0.888889
K562	chr3	152244038	152244073	152244038	+	High_confidence	20	22	57	2.448562	4.338804	chr3	152243797	152244104	SINE|Alu|AluSx1	-	chr3	152243827	152300110	MBNL1|ENST00000477171.1	+	152243827,152244320,152299404	152244040,152244440,152300110	0.877193
K562	chr7	136092891	136092925	136092924	+	High_confidence	119	123	175	7.517515	6.568573	chr7	136092728	136093088	LTR|ERVL-MaLR|THE1A	+	chr7	136092924	136437163	AC078845.1|ENST00000445293.6	+	136092924,136117070,136177251,136242149,136328981,136405269,136437051	136093036,136117188,136177413,136242371,136329097,136405316,136437163	0.697143
K562	chr22	16611768	16611769	16611768	+	High_confidence	20	20	20	0.859145	3.684184	chr22	16611747	16614708	LTR|ERV1|HERVH-int	+	chr22	16612581	16615104	AP000547.3|ENST00000588548.1	+	16612581	16615104	1.000000
K562	chr7	8233001	8233027	8233001	-	RAMPAGE_only	1	1	11	0.472530	3.321928	chr7	8233000	8233142	SINE|MIR|MIR1_Amn	-	chr7	8113922	8235926	ICA1|ENST00000422063.6	-	8113922,8127872,8138839,8138984,8141764,8141968,8143874,8157115,8158526,8218304,8221274,8228600,8232589,8235909	8114044,8128142,8138881,8139047,8141817,8142055,8143972,8157214,8158652,8218503,8221398,8228673,8232755,8235926	0.909091
K562	chr1	148156127	148156143	148156131	+	High_confidence	28	28	83	3.565450	5.146574	chr1	148155782	148156403	LTR|ERV1|MER51D	+	chr1	148156050	148158546	MSTRG.1734.2	+	148156050,148156789	148156547,148158546	0.951807
K562	chr22	36481960	36481977	36481960	-	High_confidence	3	3	12	0.515487	2.913977	chr22	36481702	36481993	SINE|Alu|AluSc	-	chr22	36467035	36482030	TXN2|ENST00000216185.6	-	36467035,36476732,36480574,36481563	36467917,36476856,36480837,36482030	0.916667
K562	chr19	44914321	44914322	44914321	+	High_confidence	4	4	7	0.300701	2.807355	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	1.000000
K562	chr6	144542561	144542617	144542616	+	RAMPAGE_only	8	9	27	1.159845	4.315824	chr6	144542256	144542704	LINE|L2|L2b	-	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.925926
K562	chr9	73154039	73154060	73154039	+	RAMPAGE_only	6	6	13	0.558444	3.238901	chr9	73153736	73154131	LINE|L2|L2c	-	chr9	73151901	73160338	ANXA1|ENST00000415424.5	+	73151901,73154197,73158521,73158694,73159328,73160262	73151924,73154340,73158601,73158803,73159423,73160338	0.692308
K562	chr7	123553338	123553339	123553338	-	RAMPAGE_only	32	34	44	1.890118	4.735362	chr7	123553169	123553535	LTR|ERVL-MaLR|THE1B	-	chr7	123541095	123557455	NDUFA5|ENST00000378795.8	-	123541095,123545610,123550469,123557403	123542220,123545676,123550586,123557455	0.931818
K562	chr19	34676037	34676038	34676037	-	High_confidence	35	35	36	1.546460	4.786426	chr19	34675656	34676296	LTR|ERV1|LTR12_	-	chr19	34576732	34677031	SCGB1B2P|NR_027620.3	-	34576732,34577265,34577542,34675629	34576994,34577456,34577732,34677031	0.916667
K562	chr13	64075701	64075763	64075701	-	High_confidence	20	20	127	5.455568	5.129069	chr13	64074921	64075752	LTR|ERV1|MER52A	-	chr13	63986370	64076011	LINC00355|ENST00000456627.1	-	63986370,63990095,64002384,64003347,64034346,64075241	63987039,63990200,64002409,64003465,64034537,64076011	0.976378
K562	chr1	12409848	12409855	12409848	+	RAMPAGE_only	32	39	82	3.522493	5.683280	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.829268
K562	chr3	80771351	80771352	80771351	+	RAMPAGE_only	5	5	8	0.343658	2.500000	chr3	80771287	80771435	LTR|ERVL-MaLR|MLT1I	-	chr3	80764896	80789354	LINC02050|ENST00000473938.1	+	80764896,80780092,80784040,80788796,80789236	80765087,80780245,80784117,80788969,80789354	0.500000
K562	chr5	79611937	79611951	79611937	+	High_confidence	2	2	6	0.257743	2.584963	chr5	79611682	79611982	SINE|Alu|AluSg	-	chr5	79612119	79623648	TENT2|ENST00000505571.5	+	79612119,79613010,79619611,79619993,79623251	79612174,79613075,79619785,79620083,79623648	0.833333
K562	chr15	78245687	78245688	78245687	-	High_confidence	223	223	229	9.837206	4.595581	chr15	78245271	78246702	LTR|ERV1|LTR12C	-	chr15	78170913	78245688	ACSBG1|ENST00000560817.5	-	78170913,78173592,78174384,78178613,78179549,78180754,78181968,78182465,78182704,78245268	78171529,78173839,78174524,78178831,78179780,78180936,78182145,78182615,78182785,78245688	0.969432
K562	chr16	68381490	68381524	68381490	-	RAMPAGE_only	7	7	30	1.288717	3.898069	chr16	68381481	68381766	LTR|ERVL-MaLR|MLT1I	+	chr16	68361126	68372258	SMPD3|ENST00000568373.5	-	68361126,68361602,68363495,68363776,68364750,68365016,68370858	68361307,68361708,68363559,68363866,68364906,68365092,68372258	0.733333
K562	chr4	102431237	102431260	102431247	-	High_confidence	29	31	88	3.780236	5.251961	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.613636
K562	chr8	128049645	128049701	128049645	+	RAMPAGE_only	3	3	21	0.902102	3.213639	chr8	128049515	128049731	LTR|ERVL|LTR33	+	chr8	127890627	128101253	PVT1|ENST00000513868.6	+	127890627,127939507,127983903,127989161,128070159,128096517,128099369,128100979	127890998,127939676,127984204,127989291,128070272,128096654,128099573,128101253	0.857143
K562	chr7	99935241	99935242	99935241	-	RAMPAGE_only	10	10	12	0.515487	2.751629	chr7	99935071	99935422	LTR|ERVL-MaLR|THE1B	-	chr7	99923268	99929620	GJC3|ENST00000312891.2	-	99923268,99928839	99923603,99929620	1.000000
K562	chr19	18544030	18544036	18544030	-	High_confidence	3	3	13	0.558444	3.418296	chr19	18544020	18544075	SINE|MIR|MIR3	-	chr19	18538215	18544077	FKBP8|ENST00000597611.7	-	18538215,18539370,18539550,18541678,18543908	18538436,18539459,18539720,18541995,18544077	0.769231
K562	chrX	138990595	138990676	138990597	-	High_confidence	3056	3903	7367	316.465919	5.234572	chrX	138990423	138990790	LTR|ERVL-MaLR|THE1B	-	chrX	138635485	138990567	FGF13|ENST00000455663.5	-	138635485,138702983,138708817,138857511,138985017,138990507	138635655,138703087,138708928,138857679,138985091,138990567	0.965929
K562	chr1	42824750	42824751	42824750	+	High_confidence	8	8	8	0.343658	3.000000	chr1	42824524	42824995	LTR|ERVL|LTR16E1	-	chr1	42824435	42844985	MSTRG.882.7	+	42824435,42825622,42830443,42830767,42835037,42835731,42837157,42838900,42840032,42840151,42840269,42842516	42824752,42825738,42830533,42831115,42835154,42835760,42837190,42838921,42840053,42840178,42840296,42844985	1.000000
K562	chr1	1655445	1655449	1655448	-	RAMPAGE_only	18	18	35	1.503503	4.852169	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	0.942857
K562	chr13	48492678	48492774	48492678	-	High_confidence	11	12	90	3.866151	5.729151	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.733333
K562	chr2	200888587	200888628	200888597	-	High_confidence	8	8	31	1.331674	4.164735	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.903226
K562	chr19	45524130	45524140	45524130	+	RAMPAGE_only	6	6	13	0.558444	2.968919	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.923077
K562	chrX	98573833	98573850	98573849	+	High_confidence	50	50	163	7.002029	5.232829	chrX	98573437	98574092	LTR|ERV1|LTR49	+	chrX	98573858	98865564	AL157778.1|ENST00000626665.3	+	98573858,98578985,98644527,98731530,98785026,98864610	98573932,98579074,98644574,98731577,98785124,98865564	0.668712
K562	chr1	169662003	169662004	169662003	+	High_confidence	140	141	144	6.185841	4.455110	chr1	169661033	169662412	LTR|ERV1|LTR12C	+	chr1	169662006	169853085	C1orf112|ENST00000498289.5	+	169662006,169683468,169683755,169783810,169784876,169798856,169800882,169802620,169803168,169804111,169806003,169807790,169821678,169823407,169827050,169827710,169829262,169830258,169830695,169832416,169836926,169842416,169843673,169847689,169849499,169850264,169850453,169851816,169852789	169662523,169683625,169683932,169783928,169784913,169798958,169800971,169802725,169803309,169804240,169806088,169807929,169821759,169823472,169827199,169827840,169829449,169830341,169830747,169832506,169837112,169842539,169843769,169847803,169849604,169850327,169850566,169851936,169853085	0.951389
K562	chr12	102313377	102313391	102313380	+	RAMPAGE_only	3	3	8	0.343658	2.807355	chr12	102307781	102313768	LINE|L1|L1PA2	-	chr12	102304354	102463491	LINC02456|ENST00000635615.1	+	102304354,102304631,102315310,102348882,102423070,102462727	102304448,102304756,102315490,102348932,102423180,102463491	0.500000
K562	chr20	3795750	3795823	3795750	+	High_confidence	63	64	419	17.999080	5.603705	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.985680
K562	chr6	2999167	2999179	2999178	-	High_confidence	4	4	14	0.601401	3.238901	chr6	2999098	2999242	LINE|L1|L1MD2	-	chr6	2989725	2999134	AL133351.1|ENST00000429319.1	-	2989725,2999012	2990011,2999134	0.785714
K562	chr8	15582119	15582141	15582119	+	RAMPAGE_only	2	2	11	0.472530	2.921928	chr8	15576322	15582323	LINE|L1|L1PA2	-	chr8	15561618	15673836	TUSC3|ENST00000507400.1	+	15561618,15623079,15650696,15659506,15662155,15673746	15561685,15623249,15650814,15659647,15662296,15673836	0.909091
K562	chr14	40954688	40954701	40954700	+	High_confidence	7	8	17	0.730273	3.500000	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954710	41141048	LOC644919|NR_109758.1	+	40954710,40962789,40974339,41140833	40954952,40962842,40974390,41141048	0.705882
K562	chr11	78081952	78081953	78081952	-	High_confidence	4	5	7	0.300701	2.584963	chr11	78081299	78085065	LTR|ERV1|HERVH-int	+	chr11	78068303	78081961	MSTRG.5028.7	-	78068303,78072997,78079578,78081826	78070036,78073141,78079786,78081961	0.857143
K562	chr5	58937339	58937340	58937339	+	RAMPAGE_only	51	55	57	2.448562	5.244818	chr5	58937065	58937991	LINE|L1|L1M2	-	chr5	59039760	59063503	AC092343.1|ENST00000500224.2	+	59039760,59063084	59040070,59063503	0.526316
K562	chr2	126308500	126308504	126308500	+	High_confidence	15	16	23	0.988016	3.823068	chr2	126307723	126308563	LTR|ERV1|LTR1A2	-	chr2	126308509	126343992	AC023347.1|ENST00000435352.1	+	126308509,126312300,126343761	126308645,126312537,126343992	0.608696
K562	chr3	101639751	101639756	101639755	-	High_confidence	4	5	11	0.472530	2.913977	chr3	101632599	101641508	LTR|ERV1|HERVS71-int	+	chr3	101620899	101638949	MSTRG.20148.1	-	101620899,101634341,101636696,101637169,101637574	101626411,101635284,101636774,101637238,101638949	0.545455
K562	chr2	96303177	96303331	96303177	-	RAMPAGE_only	42	43	146	6.271756	5.708713	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.993151
K562	chr15	51603698	51603702	51603701	-	High_confidence	58	61	94	4.037980	5.492107	chr15	51603584	51603891	SINE|Alu|AluY	+	chr15	51547331	51603701	DMXL2|ENST00000560421.5	-	51547331,51563380,51564124,51565087,51568486,51576055,51603606	51547408,51563447,51564260,51565166,51568558,51576181,51603701	0.617021
K562	chr13	37000260	37000261	37000260	-	High_confidence	8	8	10	0.429572	3.121928	chr13	37000063	37000363	SINE|Alu|AluY	+	chr13	36985648	37000261	ALG5|ENST00000496689.1	-	36985648,36989483,36993603,36995424,36999931	36985740,36989576,36993672,36995596,37000261	0.500000
K562	chr4	36641899	36641911	36641910	-	High_confidence	113	113	307	13.187870	6.186708	chr4	36641714	36642024	SINE|Alu|AluY	+	chr4	36496692	36641900	LINC02505|ENST00000505298.5	-	36496692,36498426,36582656,36584664,36615417,36641849	36497052,36498488,36582730,36584796,36615526,36641900	0.654723
K562	chr10	104254172	104254173	104254172	+	High_confidence	4	4	6	0.257743	2.584963	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254163	104266190	GSTO1|ENST00000493946.1	+	104254163,104255162,104259575,104262978,104266083	104254499,104255271,104259798,104263077,104266190	0.666667
K562	chr11	78139051	78139069	78139066	-	High_confidence	8	8	19	0.816187	3.725481	chr11	78138792	78139208	LINE|L2|L2b	+	chr11	78121136	78139258	ALG8|ENST00000530910.5	-	78121136,78124020,78127357,78138709	78121174,78124214,78127436,78139258	0.894737
K562	chrX	49148545	49148638	49148620	-	RAMPAGE_only	8	8	86	3.694322	4.808370	chrX	49148260	49148648	LTR|ERV1|HERVE-int	-	chrX	49138641	49150577	MSTRG.29376.3	-	49138641,49148383,49150432	49145519,49149165,49150577	0.860465
K562	chr1	42959029	42959078	42959077	+	High_confidence	19	19	102	4.381638	4.163655	chr1	42959103	42959181	SINE|MIR|MIR3	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.980392
K562	chr3	33936509	33936578	33936522	+	High_confidence	153	183	379	16.280790	6.078449	chr3	33936341	33936792	LTR|ERVL-MaLR|MLT1H2	+	chr3	33936548	33952259	MSTRG.19569.1	+	33936548,33951950	33936901,33952259	0.606860
K562	chr15	63794073	63794074	63794073	-	RAMPAGE_only	70	70	86	3.694322	5.103725	chr15	63793794	63794347	LTR|ERV1|MER41A	+	chr15	63608617	63833888	HERC1|ENST00000443617.6	-	63608617,63612250,63615767,63616429,63622814,63623724,63624157,63625984,63628676,63630465,63632708,63633847,63634732,63635960,63637504,63638410,63638710,63640151,63641469,63642956,63643403,63644991,63645482,63648068,63649724,63651252,63652413,63654118,63655741,63656087,63658543,63659735,63660972,63661752,63662983,63664469,63665918,63666355,63669537,63672495,63674341,63677844,63680076,63680536,63686358,63689588,63690540,63692410,63693963,63694311,63694773,63696123,63698727,63706779,63712774,63713352,63716301,63718573,63718782,63723181,63725291,63727646,63729235,63729496,63732923,63734723,63746917,63747723,63749366,63749646,63752957,63754504,63755228,63756436,63758174,63764095,63774693,63833826	63609266,63612556,63615920,63616682,63622891,63623890,63624327,63626154,63628815,63630635,63632811,63633970,63634888,63636142,63637643,63638536,63638776,63640445,63641643,63643058,63643550,63645097,63645682,63648199,63649925,63651380,63652541,63654324,63655955,63656358,63658718,63659936,63661025,63662021,63663204,63664594,63666150,63666472,63669698,63672694,63675117,63678365,63680160,63680776,63686535,63689699,63690647,63692566,63694157,63694549,63694894,63696339,63698996,63706831,63712895,63713665,63716473,63718694,63718897,63723355,63725513,63727838,63729368,63729649,63733145,63734849,63747083,63747858,63749538,63749791,63753085,63754648,63755325,63756748,63758369,63764191,63775649,63833888	0.790698
K562	chr3	6507748	6507781	6507780	+	High_confidence	695	722	1929	82.864498	6.906634	chr3	6507654	6507944	SINE|Alu|AluYi6	-	chr3	6507780	6736726	MSTRG.19302.2	+	6507780,6694724,6717568,6724449,6732270,6735661	6507952,6694877,6717667,6724546,6732495,6736726	0.551581
K562	chr11	59810241	59810308	59810287	-	High_confidence	5	5	23	0.988016	3.969002	chr11	59809995	59810308	SINE|Alu|AluSx1	-	chr11	59806534	59810300	MRPL16|ENST00000534340.1	-	59806534,59807700,59809854,59810239	59806832,59807849,59809920,59810300	0.739130
K562	chr5	151709491	151709495	151709494	+	RAMPAGE_only	4	4	8	0.343658	2.750000	chr5	151709032	151709668	LTR|ERV1|LTR9D	+	chr5	151676972	151724782	CLMAT3|ENST00000518905.1	+	151676972,151679219,151724564	151677047,151679336,151724782	0.750000
K562	chr11	86938472	86938480	86938472	-	RAMPAGE_only	36	45	99	4.252766	5.045847	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86892213	86922104	AP001528.2|ENST00000528660.1	-	86892213,86896412,86921235	86892372,86896540,86922104	0.898990
K562	chrX	48765259	48765272	48765259	+	High_confidence	2	2	11	0.472530	3.027169	chrX	48765289	48765607	SINE|Alu|AluSz	+	chrX	48765871	48773646	GLOD5|ENST00000445229.1	+	48765871,48770926,48773309	48765972,48771082,48773646	0.727273
K562	chr7	1855185	1855222	1855206	-	High_confidence	22	24	160	6.873157	5.785256	chr7	1854806	1855859	LTR|ERVL-MaLR|MLT1A0-int	-	chr7	1815815	1855220	MSTRG.25300.11	-	1815815,1854362	1816228,1855220	0.993750
K562	chr15	28933913	28933924	28933923	+	RAMPAGE_only	5	5	10	0.429572	3.121928	chr15	28933748	28934022	LINE|L2|L2c	-	chr15	28921636	29118311	APBA2|ENST00000558259.5	+	28921636,28995752,29053844,29074920,29076054,29093074,29094277,29098489,29101598,29105378,29106606,29108269,29113875,29117061	28921749,28995806,29054835,29075001,29076091,29093220,29094313,29098576,29101784,29105558,29106819,29108389,29114016,29118311	0.700000
K562	chr2	188287681	188287695	188287694	-	High_confidence	267	267	564	24.227878	6.246516	chr2	188287483	188287806	SINE|Alu|AluY	+	chr2	187712815	188287691	LINC01090|ENST00000434418.2	-	187712815,188035595,188165753,188287466	187712879,188035711,188165908,188287691	0.542553
K562	chr5	31530864	31530878	31530864	-	RAMPAGE_only	4	5	11	0.472530	2.913977	chr5	31530667	31530954	LINE|L2|L2c	+	chr5	31400496	31532061	DROSHA|ENST00000511367.6	-	31400496,31405676,31406852,31409055,31409249,31410745,31421271,31422786,31424426,31429474,31431575,31435764,31437238,31448546,31449280,31451532,31464235,31466181,31467938,31472062,31483553,31484880,31486490,31493206,31495285,31504554,31508620,31511034,31514987,31515453,31521122,31526078,31529039,31530797,31531989	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31422944,31424471,31429545,31431678,31435864,31437298,31448607,31449419,31451640,31464343,31466281,31468063,31472232,31483628,31484962,31486562,31493293,31495372,31504635,31508775,31511176,31515219,31515564,31521215,31526912,31529105,31530924,31532061	1.000000
K562	chr2	55618850	55618873	55618850	-	High_confidence	9	9	35	1.503503	4.748940	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.942857
K562	chr9	72114591	72114605	72114591	+	High_confidence	90	93	205	8.806232	6.164298	chr9	72114564	72114671	SINE|Alu|AluYh9	-	chr9	72114594	72252223	GDA|ENST00000545168.5	+	72114594,72195499,72202570,72210686,72213885,72219478,72223119,72225676,72227942,72231113,72241151,72245147,72247405,72248271	72114833,72195588,72202742,72210774,72213991,72219506,72223227,72225784,72228040,72231181,72241298,72245278,72247433,72252223	0.834146
K562	chr4	168442390	168442412	168442408	-	RAMPAGE_only	3	3	10	0.429572	3.121928	chr4	168441989	168448038	LINE|L1|L1PA2	+	chr4	168396098	168456059	DDX60L|ENST00000505863.1	-	168396098,168400825,168403981,168405949,168406601,168415407,168415656,168416681,168420260,168421759,168422523,168423607,168427069,168430477,168432454,168433009,168441336,168448637,168453123,168456038	168396124,168400978,168404106,168406078,168406706,168415517,168415799,168416797,168420380,168421909,168422670,168423774,168427322,168430638,168432570,168433115,168441492,168448779,168453282,168456059	0.900000
K562	chr17	31923498	31923548	31923527	+	RAMPAGE_only	5	5	25	1.073931	4.103465	chr17	31923320	31923567	SINE|Alu|AluY	+	chr17	31937009	32001045	SUZ12|NM_015355.3	+	31937009,31940285,31940421,31947616,31966146,31973145,31975481,31976520,31982998,31988319,31993241,31993864,31994563,31995563,31996797,31998657	31937520,31940332,31940486,31947685,31966196,31973231,31975713,31976614,31983104,31988497,31993333,31994008,31994721,31995762,31996877,32001045	0.800000
K562	chr7	106598810	106598811	106598810	-	High_confidence	8	8	11	0.472530	2.846439	chr7	106598614	106598802	LTR|ERVL-MaLR|MLT1J	-	chr7	106569875	106598808	AC005050.1|ENST00000650160.1	-	106569875,106572947,106591549,106598753	106571144,106573160,106591682,106598808	0.545455
K562	chr7	97126662	97126713	97126712	+	RAMPAGE_only	5	5	22	0.945059	4.186704	chr7	97125453	97127258	LINE|L1|L1PA8	-	chr7	97117722	97181487	SDHAF3|ENST00000360382.4	+	97117722,97136387,97181011	97117897,97136467,97181487	0.818182
K562	chr5	124725141	124725153	124725143	-	RAMPAGE_only	13	23	54	2.319690	5.148316	chr5	124724874	124725417	LINE|L2|L2a	+	chr5	124643510	124744367	ZNF608|ENST00000503896.6	-	124643510,124649609,124701013,124744083	124643683,124649697,124701269,124744367	0.796296
K562	chr1	30731817	30731838	30731817	+	High_confidence	3	3	11	0.472530	3.121928	chr1	30731667	30732002	LINE|L2|L2b	+	chr1	30731868	30738539	MSTRG.648.1	+	30731868,30732804,30738326	30732146,30732984,30738539	0.727273
K562	chr11	5247309	5247336	5247321	-	RAMPAGE_only	16	18	41	1.761246	4.057856	chr11	5247161	5247498	LTR|ERVL-MaLR|MLT1A	-	chr11	5241953	5243592	HBBP1|NR_001589.1	-	5241953,5243105,5243449	5242247,5243328,5243592	0.731707
K562	chr7	95837536	95837549	95837548	+	High_confidence	4	4	9	0.386615	2.725481	chr7	95831968	95837992	LINE|L1|L1PA3	-	chr7	95837617	96028321	DYNC1I1|ENST00000519371.1	+	95837617,95869882,95977511,95984814,95987055,95995947,96028174	95837649,95869998,95977601,95984977,95987155,95996073,96028321	0.777778
K562	chr10	103395966	103395967	103395966	-	High_confidence	8	8	8	0.343658	2.750000	chr10	103395615	103395992	LINE|RTE-X|L4_C_Mam	+	chr10	103389049	103396074	ATP5MD|ENST00000369811.5	-	103389049,103392190,103392370,103395745	103389166,103392283,103392466,103396074	0.875000
K562	chr4	1241498	1241501	1241498	-	High_confidence	8	9	13	0.558444	3.251629	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1235752	1241463	CTBP1|ENST00000515690.1	-	1235752,1238182,1241324	1236316,1238337,1241463	0.615385
K562	chr10	7619672	7619673	7619672	-	High_confidence	103	135	143	6.142884	4.723787	chr10	7619498	7619860	LTR|ERVL-MaLR|THE1D	-	chr10	7559269	7619673	ITIH5|NM_032817.5	-	7559269,7566029,7569667,7573141,7576452,7579754,7585900,7615981,7617112,7619580	7563384,7566407,7569784,7573195,7577012,7580064,7586069,7616098,7617282,7619673	0.951049
K562	chr14	36971406	36971462	36971411	-	RAMPAGE_only	31	31	70	3.007006	5.804213	chr14	36971137	36971776	LTR|ERV1|LTR9	+	chr14	36678430	37172423	SLC25A21|ENST00000555449.5	-	36678430,36680661,36683827,36684743,36711317,36725569,36729506,36734506,36813917,36874955,37172280	36678484,36680719,36683880,36684925,36711482,36725677,36729566,36734573,36814001,36875004,37172423	0.557143
K562	chrX	135893604	135893728	135893714	+	High_confidence	16	18	129	5.541483	5.844534	chrX	135893573	135893804	LTR|ERVL|LTR41	-	chrX	135893633	135913061	SAGE1|NM_018666.2	+	135893633,135896242,135901558,135904476,135905251,135906023,135906410,135906925,135907312,135907700,135908088,135908476,135908863,135909638,135910029,135910414,135911191,135911578,135912320,135912797	135893800,135896329,135901691,135904569,135905392,135906164,135906551,135907066,135907453,135907841,135908229,135908617,135909004,135909779,135910170,135910555,135911332,135911953,135912414,135913061	0.953488
K562	chr13	114004944	114004969	114004944	-	RAMPAGE_only	3	3	16	0.687316	3.506891	chr13	114004202	114005208	LINE|L1|L1PB4	+	chr13	113977782	114077979	RASA3|NM_001320822.1	-	113977782,113981674,113992484,113996530,113999584,114000825,114007532,114009386,114011170,114013141,114015208,114016196,114017236,114018103,114018762,114021403,114024278,114027388,114027846,114029810,114040999,114052051,114073719,114077802	113979422,113981858,113992588,113996739,113999667,114000932,114007606,114009464,114011248,114013248,114015332,114016271,114017351,114018252,114018919,114021508,114024355,114027461,114027927,114029887,114041094,114052155,114073837,114077979	0.812500
K562	chr1	160263333	160263373	160263372	-	High_confidence	11	14	40	1.718289	4.703056	chr1	160263341	160263646	SINE|Alu|AluSz	+	chr1	160215714	160262560	DCAF8|NM_015726.3	-	160215714,160218323,160218848,160222650,160224441,160225061,160225590,160231296,160237134,160238606,160239696,160243959,160261284,160262448	160217708,160218440,160218968,160222781,160224549,160225119,160225663,160231407,160237229,160238747,160240370,160244034,160261358,160262560	0.950000
K562	chr3	101466874	101466892	101466874	-	RAMPAGE_only	5	5	14	0.601401	3.521641	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.928571
K562	chr16	16499533	16499539	16499533	+	High_confidence	455	495	960	41.238942	7.621614	chr16	16499348	16499694	LTR|ERVL-MaLR|THE1B	+	chr16	16499542	16634354	MSTRG.10488.2	+	16499542,16576196,16633466	16499619,16577043,16634354	0.554167
K562	chr17	5619419	5619424	5619423	-	High_confidence	84	161	309	13.273784	5.580052	chr17	5619250	5619612	LTR|ERVL-MaLR|THE1C	-	chr17	5584016	5619424	NLRP1|ENST00000572143.1	-	5584016,5619330	5584500,5619424	0.919094
K562	chr2	200887965	200887973	200887965	-	High_confidence	2	5	9	0.386615	2.500000	chr2	200887775	200888074	SINE|Alu|AluSx1	+	chr2	200871151	200887687	PPIL3|ENST00000415562.5	-	200871151,200876918,200881420,200882341,200885697,200887612	200871521,200877037,200881488,200882382,200885772,200887687	0.555556
K562	chr6	123368158	123368159	123368158	-	RAMPAGE_only	126	126	154	6.615414	5.367883	chr6	123367833	123368375	LINE|L2|L2	+	chr6	123349474	123637093	TRDN|NM_001251987.1	-	123349474,123366134,123375604,123377715,123377865,123381369,123382117,123388521,123393623,123438062,123438943,123464905,123497192,123503718,123512302,123516140,123530505,123547339,123548453,123570922,123636753	123352586,123366182,123375631,123377742,123377898,123381390,123382147,123388551,123393677,123438125,123439003,123464983,123497252,123503901,123512362,123516206,123530565,123547372,123548612,123571132,123637093	0.584416
K562	chr5	85663572	85663594	85663593	+	High_confidence	3	4	11	0.472530	3.121928	chr5	85657593	85663641	LINE|L1|L1PA2	-	chr5	85663231	85664684	AC010595.1|ENST00000507387.1	+	85663231	85664684	0.818182
K562	chr12	127983330	127983377	127983337	-	High_confidence	7	7	22	0.945059	3.624680	chr12	127983198	127984510	LTR|ERV1|LTR12C	+	chr12	127883988	127983891	LINC00508|NR_126452.2	-	127883988,127940573,127983066,127983801	127885105,127940735,127983125,127983891	0.863636
K562	chr1	167863569	167863658	167863599	+	High_confidence	96	101	367	15.765304	5.890348	chr1	167863572	167864915	LTR|ERV1|Harlequin-int	+	chr1	167863584	167991339	MSTRG.2182.1	+	167863584,167951799,167966628,167974829,167987494,167991203	167863838,167951861,167966721,167975015,167987608,167991339	0.746594
K562	chrX	49150554	49150590	49150556	-	High_confidence	19	32	73	3.135878	4.989648	chrX	49150355	49150575	LTR|ERVL-MaLR|MLT1D	-	chrX	49138641	49150577	MSTRG.29376.3	-	49138641,49148383,49150432	49145519,49149165,49150577	0.698630
K562	chr4	74330355	74330441	74330419	-	High_confidence	9	9	40	1.718289	4.734184	chr4	74330197	74330453	SINE|Alu|AluJr	+	chr4	74276634	74331393	MSTRG.21490.1	-	74276634,74330197,74331320	74278778,74330304,74331393	0.625000
K562	chr6	2990740	2990755	2990742	-	High_confidence	42	73	190	8.161874	4.497913	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989725	2990765	MSTRG.23668.2	-	2989725,2990670	2990011,2990765	0.889474
K562	chr6	32131302	32131311	32131310	-	High_confidence	42	42	80	3.436578	4.657447	chr6	32131269	32131310	SINE|Alu|AluYk11	+	chr6	32128706	32131660	MSTRG.24124.1	-	32128706,32130924	32129854,32131660	0.975000
K562	chr6	146855006	146855007	146855006	+	High_confidence	867	1008	1205	51.763463	7.611283	chr6	146854795	146855346	LTR|ERVL|MLT2A2	+	chr6	146855016	146863081	MSTRG.25048.2	+	146855016,146857519,146862765	146856840,146859238,146863081	0.900415
K562	chr4	48255346	48255365	48255364	-	RAMPAGE_only	10	10	37	1.589418	4.537845	chr4	48255094	48255505	LTR|ERVL-MaLR|MLT1K	-	chr4	48135782	48269797	TEC|NM_003215.2	-	48135782,48138664,48138903,48141354,48145078,48145407,48146324,48149556,48150862,48156679,48163701,48167777,48168585,48170247,48171367,48176081,48228476,48269751	48137499,48138822,48139022,48141419,48145295,48145579,48146399,48149690,48150942,48156734,48163767,48167953,48168626,48170376,48171449,48176186,48228659,48269797	0.702703
K562	chr2	71417037	71417058	71417054	+	RAMPAGE_only	3	3	12	0.515487	3.084963	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	1.000000
K562	chr8	75324596	75324677	75324676	-	High_confidence	9	15	63	2.706306	5.401650	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223702	75324741	CASC9|ENST00000522183.1	-	75223702,75324564	75224358,75324741	0.507937
K562	chr3	69999732	69999733	69999732	+	High_confidence	194	199	221	9.493548	6.419075	chr3	69999500	70000000	LTR|ERV1|LTR1A2	+	chr3	69999732	70015318	SAMMSON|ENST00000483525.2	+	69999732,70012356,70013519,70013793	69999867,70012598,70013672,70015318	0.678733
K562	chr4	6673446	6673447	6673446	+	High_confidence	695	698	714	30.671463	5.389583	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	0.974790
K562	chr11	27219936	27219949	27219936	-	High_confidence	6	6	11	0.472530	2.921928	chr11	27219703	27225730	LINE|L1|L1PA2	+	chr11	27217151	27220102	BBOX1-AS1|ENST00000531363.1	-	27217151,27219686	27217480,27220102	0.636364
K562	chr17	83049136	83049156	83049155	-	High_confidence	3	3	7	0.300701	2.584963	chr17	83049003	83049282	SINE|Alu|AluY	+	chr17	82943790	83049166	B3GNTL1|ENST00000576599.5	-	82943790,82946878,82956694,82957180,82957358,82961056,82965650,83005114,83005574,83014453,83035034,83048470,83048668	82944049,82946983,82956769,82957249,82957494,82961181,82965746,83005210,83005671,83014519,83035099,83048570,83049166	0.857143
K562	chr17	40828135	40828210	40828135	+	RAMPAGE_only	8	8	35	1.503503	4.343289	chr17	40827956	40828193	LINE|L2|L2b	+	chr17	40819184	40836274	TMEM99|ENST00000622451.1	+	40819184,40833114,40834381	40819279,40833199,40836274	0.942857
K562	chrX	48770503	48770540	48770539	+	RAMPAGE_only	9	9	36	1.546460	2.584332	chrX	48770505	48770693	LTR|ERVL-MaLR|MLT1J	-	chrX	48765871	48773646	GLOD5|ENST00000445229.1	+	48765871,48770926,48773309	48765972,48771082,48773646	0.972222
K562	chr7	12588744	12588769	12588744	+	High_confidence	10	10	20	0.859145	3.421928	chr7	12588441	12588873	LTR|ERV1|LTR21A	-	chr7	12588923	12653104	MSTRG.25443.5	+	12588923,12604513,12622800,12625009,12625761,12626583,12629100,12636044,12640346,12644137,12644583,12649466,12651840,12652587	12589069,12604663,12622893,12625142,12625850,12626799,12629222,12636135,12640517,12644315,12644705,12649544,12651901,12653104	1.000000
K562	chr12	123388542	123388554	123388553	+	High_confidence	63	67	192	8.247788	3.873565	chr12	123388469	123388649	SINE|MIR|MIRb	+	chr12	123389270	123405074	KMT5A|ENST00000461103.5	+	123389270,123390629,123395046,123396344,123403572,123404883	123389554,123390786,123395266,123396432,123403632,123405074	0.973958
K562	chr18	8913858	8913867	8913858	+	High_confidence	1	1	7	0.300701	2.584963	chr18	8913646	8914109	LTR|ERV1|LTR2	+	chr18	8913965	8923981	MSTRG.13389.1	+	8913965,8916790	8914375,8923981	0.714286
K562	chr5	54313567	54313657	54313623	+	High_confidence	173	178	820	35.224929	7.616669	chr5	54313477	54313833	LTR|ERVL-MaLR|THE1B	+	chr5	54313508	54416925	MSTRG.22457.2	+	54313508,54317551,54320913,54401642,54403522,54408454,54415021	54313750,54317788,54320998,54401865,54403788,54408521,54416925	0.752439
K562	chr22	19144037	19144038	19144037	-	High_confidence	6	6	7	0.300701	2.584963	chr22	19143879	19144053	LINE|L2|L2c	+	chr22	19133967	19144633	ESS2|ENST00000472073.1	-	19133967,19135059,19137322,19138214,19139158,19139611,19139854,19142537,19142725,19144056	19134475,19135175,19137432,19138317,19139292,19139729,19140024,19142633,19142894,19144633	0.857143
K562	chr3	194486571	194486600	194486571	-	High_confidence	3	3	11	0.472530	2.921928	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.727273
K562	chr8	74866964	74867012	74866964	-	High_confidence	11	11	49	2.104904	4.401936	chr8	74866519	74872545	LINE|L1|L1PA2	+	chr8	74844847	74866936	AC011632.1|ENST00000522914.1	-	74844847,74845876,74866517,74866864	74845035,74845953,74866634,74866936	0.775510
K562	chr22	17917780	17917790	17917780	-	RAMPAGE_only	6	7	21	0.902102	3.361294	chr22	17917754	17917859	LINE|L2|L2a	+	chr22	17834334	17906886	MICAL3|NM_001122731.2	-	17834334,17841821,17864898,17865923,17871836,17885877,17887169,17887322,17889033,17891484,17893807,17895283,17896245,17896723,17899447,17900841,17901877,17902630,17904631,17906548	17834549,17842017,17864986,17866012,17872023,17886051,17887232,17887435,17889230,17891632,17893904,17895410,17896361,17896981,17899548,17900997,17901979,17902747,17904839,17906886	0.809524
K562	chr6	152875956	152875989	152875988	-	High_confidence	156	157	565	24.270835	6.721136	chr6	152875793	152876094	SINE|Alu|AluY	+	chr6	152758006	152875974	MSTRG.25133.1	-	152758006,152759979,152831052,152831853,152875706	152758790,152760084,152831268,152831936,152875974	0.688496
K562	chr18	54754240	54754243	54754240	+	RAMPAGE_only	5	8	17	0.730273	3.616875	chr18	54754053	54754413	LTR|ERVL-MaLR|THE1D	+	chr18	54828198	54895516	RAB27B|ENST00000262094.9	+	54828198,54877566,54879368,54884332,54887994,54889223	54828700,54877738,54879454,54884436,54888118,54895516	0.529412
K562	chr19	15829286	15829306	15829286	+	High_confidence	4	4	12	0.515487	3.095795	chr19	15829201	15829645	LTR|ERV1|HERVH-int	+	chr19	15829097	15834951	UCA1|ENST00000644502.1	+	15829097,15831254,15833570,15834501	15829338,15831356,15833632,15834951	0.750000
K562	chr4	84299223	84299227	84299223	-	High_confidence	5	5	12	0.515487	3.277613	chr4	84298780	84304810	LINE|L1|L1PA2	+	chr4	83968081	84299169	LOC101928978|NR_125909.1	-	83968081,84012054,84148046,84149218,84243110,84284205,84286668,84293219,84299123	83970110,84012119,84148130,84149256,84243216,84284326,84286827,84293409,84299169	0.833333
K562	chr1	8790627	8790662	8790627	-	RAMPAGE_only	22	44	119	5.111910	5.691805	chr1	8790603	8790885	SINE|Alu|AluSz6	-	chr1	8352396	8817465	RERE|ENST00000337907.7	-	8352396,8355418,8356099,8358195,8359763,8360111,8361762,8362682,8364055,8364745,8365811,8422726,8465924,8495062,8497404,8508626,8541213,8556474,8557417,8614560,8624309,8655972,8792403,8817159	8355120,8355599,8356246,8358916,8359986,8361490,8361876,8362844,8364255,8364838,8365974,8422807,8466023,8495162,8497529,8508675,8541318,8556571,8557523,8614686,8624380,8656441,8792588,8817465	0.966387
K562	chr12	21395386	21395397	21395396	-	High_confidence	4	4	8	0.343658	2.521641	chr12	21395009	21401039	LINE|L1|L1PA2	+	chr12	21318830	21395397	SLCO1A2|ENST00000421287.5	-	21318830,21334587,21394905	21318923,21334704,21395397	0.500000
K562	chr6	147222553	147222554	147222553	+	RAMPAGE_only	8	10	11	0.472530	3.121928	chr6	147218770	147223153	LINE|L1|L1MC1	-	chr6	147204532	147384755	STXBP5|ENST00000321680.10	+	147204532,147205970,147235249,147239169,147260614,147262289,147267083,147278080,147291093,147310083,147311454,147313883,147314263,147314595,147315514,147316228,147324958,147327124,147334156,147339178,147339336,147353322,147359083,147363334,147364000,147373730,147382777,147384713	147204682,147206068,147235331,147239270,147260749,147262353,147267167,147278204,147291172,147310238,147311527,147314031,147314331,147314636,147315735,147316407,147325084,147327276,147334222,147339238,147339384,147353373,147359323,147363704,147364166,147373842,147382998,147384755	0.818182
K562	chr5	31530826	31530831	31530826	-	RAMPAGE_only	4	4	8	0.343658	3.000000	chr5	31530667	31530954	LINE|L2|L2c	+	chr5	31400496	31532061	DROSHA|ENST00000511367.6	-	31400496,31405676,31406852,31409055,31409249,31410745,31421271,31422786,31424426,31429474,31431575,31435764,31437238,31448546,31449280,31451532,31464235,31466181,31467938,31472062,31483553,31484880,31486490,31493206,31495285,31504554,31508620,31511034,31514987,31515453,31521122,31526078,31529039,31530797,31531989	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31422944,31424471,31429545,31431678,31435864,31437298,31448607,31449419,31451640,31464343,31466281,31468063,31472232,31483628,31484962,31486562,31493293,31495372,31504635,31508775,31511176,31515219,31515564,31521215,31526912,31529105,31530924,31532061	1.000000
K562	chr8	15417179	15417191	15417190	+	RAMPAGE_only	3	3	8	0.343658	2.807355	chr8	15417004	15417387	LTR|ERVL-MaLR|MSTA	+	chr8	15540086	15766649	TUSC3|NM_178234.2	+	15540086,15623079,15650696,15659506,15662155,15673746,15730665,15743537,15748374,15764202	15540568,15623249,15650814,15659647,15662296,15673836,15730729,15743612,15748465,15766649	0.750000
K562	chr12	129109673	129109674	129109673	+	High_confidence	1940	2028	2280	97.942486	5.850091	chr12	129109479	129109833	LTR|ERVL-MaLR|THE1A	+	chr12	129109689	129113298	LOC283352|NR_104172.1	+	129109689,129110992,129111419,129113064	129109757,129111139,129111515,129113298	0.926316
K562	chr4	184855652	184855685	184855684	-	High_confidence	49	49	114	4.897124	5.391772	chr4	184855538	184855766	LTR|ERVL-MaLR|MLT1J1	-	chr4	184846277	184855682	MIR3945HG|ENST00000510284.1	-	184846277,184850494,184855468	184846534,184850599,184855682	0.622807
K562	chr9	98045590	98045614	98045604	+	High_confidence	49	63	148	6.357670	5.465160	chr9	98045312	98045711	LTR|ERV1|MER57B1	+	chr9	98045578	98053835	MSTRG.28530.1	+	98045578	98053835	0.952703
K562	chr17	51153806	51153853	51153837	+	High_confidence	6	6	24	1.030974	3.851227	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51154043	51155759	NME1|ENST00000456492.1	+	51154043,51155650	51154444,51155759	0.750000
K562	chr12	15348670	15348703	15348670	-	High_confidence	17	18	108	4.639381	5.494737	chr12	15348476	15348800	SINE|Alu|AluYe5	+	chr12	15346476	15348675	RERG|ENST00000437578.2	-	15346476,15348262	15346625,15348675	0.796296
K562	chr15	41365758	41365764	41365763	+	High_confidence	4	4	8	0.343658	2.500000	chr15	41365708	41366019	SINE|Alu|AluSc8	-	chr15	41365746	41377288	NUSAP1|ENST00000560318.1	+	41365746,41371526,41375711,41377195	41365863,41371684,41375828,41377288	0.875000
K562	chr6	70394883	70394884	70394883	+	High_confidence	893	896	990	42.527658	6.492653	chr6	70394625	70395013	LTR|ERV1|MER48	+	chr6	70394886	70399417	AL365226.2|ENST00000418403.1	+	70394886,70395229,70399214	70395043,70395266,70399417	0.510101
K562	chr2	170244521	170244531	170244530	+	RAMPAGE_only	4	5	14	0.601401	3.238901	chr2	170244479	170244838	LINE|CR1|CR1-3_Croc	+	chr2	170199251	170655171	MYO3B|ENST00000602629.1	+	170199251,170200149,170214378,170217318,170235990,170335384,170369207,170382015,170383072,170383709,170386188,170387105,170391519,170392380,170400187,170401480,170402847,170404246,170405544,170407714,170443966,170514920,170519437,170542905,170543891,170651627,170652107,170652982	170199391,170200284,170214483,170217395,170236136,170335450,170369377,170382112,170383189,170383814,170386272,170387308,170391618,170392495,170400314,170401691,170402995,170404400,170405633,170407844,170444046,170515022,170519540,170542966,170543988,170651734,170652154,170655171	0.571429
K562	chr6	164338021	164338121	164338086	-	High_confidence	115	115	350	15.035031	5.310367	chr6	164337812	164338432	LTR|ERV1|MER41B	+	chr6	164314533	164338109	MSTRG.25209.2	-	164314533,164318036,164337712	164317117,164318143,164338109	0.831429
K562	chr21	38121727	38121748	38121741	+	High_confidence	5	5	19	0.816187	3.836592	chr21	38121639	38121787	SINE|Alu|AluSp	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.789474
K562	chr1	100363162	100363166	100363162	+	High_confidence	980	992	1475	63.361915	4.209788	chr1	100362798	100363434	LTR|ERV1|LTR9	-	chr1	100363160	100484639	CDC14A|ENST00000646563.1	+	100363160,100377545,100390731,100424221,100439931,100442933,100462650,100467955,100484291	100363225,100377621,100390824,100424301,100439998,100442996,100462881,100468094,100484639	0.888136
K562	chr12	10363706	10363707	10363706	+	High_confidence	25	29	35	1.503503	4.511865	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.914286
K562	chr2	102439321	102439407	102439373	+	High_confidence	9	9	30	1.288717	4.506891	chr2	102439146	102439465	LINE|L2|L2b	-	chr2	102438712	102440475	AC007278.1|ENST00000450893.1	+	102438712,102438937,102439592	102438795,102439298,102440475	0.900000
K562	chr20	53181090	53181091	53181090	-	RAMPAGE_only	37	37	52	2.233776	3.806253	chr20	53181066	53181375	LINE|L2|L2a	+	chr20	53168642	53179550	AL391097.1|ENST00000432706.1	-	53168642,53178137	53168849,53179550	0.826923
K562	chr7	39013088	39013166	39013108	+	High_confidence	10	11	80	3.436578	4.574582	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.875000
K562	chr8	75324454	75324467	75324454	-	High_confidence	7	7	15	0.644358	3.807355	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.666667
K562	chr14	73325751	73325752	73325751	-	RAMPAGE_only	11	11	13	0.558444	3.546594	chr14	73325641	73326344	LINE|L1|L1MD2	+	chr14	73275217	73299375	NUMB|ENST00000556772.5	-	73275217,73279280,73282358,73284080,73287109,73292733,73297210	73277293,73279424,73282505,73284374,73287314,73292874,73299375	0.923077
K562	chr18	8915576	8915577	8915576	+	RAMPAGE_only	29	29	36	1.546460	3.216636	chr18	8914109	8920902	LTR|ERV1|Harlequin-int	+	chr18	8913965	8923981	MSTRG.13389.1	+	8913965,8916790	8914375,8923981	1.000000
K562	chr5	95713494	95713522	95713494	+	RAMPAGE_only	21	28	86	3.694322	4.584294	chr5	95713280	95713670	LTR|ERVL-MaLR|MSTA	+	chr5	95717632	95756093	RHOBTB3|ENST00000504949.1	+	95717632,95731858,95736888,95748332,95752238,95755395	95717765,95732084,95737075,95748487,95752350,95756093	0.895349
K562	chr3	100263163	100263188	100263163	+	RAMPAGE_only	3	3	20	0.859145	3.932138	chr3	100263005	100263453	LTR|ERV1|LTR7	-	chr3	100261063	100325238	TBC1D23|ENST00000486274.5	+	100261063,100279648,100281741,100283606,100290577,100295086,100295301,100296171,100297922,100299238,100302066,100304845,100306436,100310402,100316098,100319068,100320776,100323586	100261545,100279760,100281847,100283811,100290701,100295211,100295348,100296275,100298045,100299331,100302237,100304888,100306543,100310542,100316187,100319204,100320971,100325238	0.750000
K562	chr1	244367127	244367173	244367127	+	RAMPAGE_only	91	104	214	9.192847	6.263504	chr1	244366903	244367480	LINE|L2|L2c	-	chr1	244378511	244389663	C1orf100|ENST00000470211.1	+	244378511,244388950	244378639,244389663	0.518692
K562	chr10	61764641	61764692	61764646	-	High_confidence	167	177	947	40.680498	6.468240	chr10	61764468	61764602	SINE|MIR|MIRc	-	chr10	61708002	61764736	MSTRG.3329.1	-	61708002,61712139,61764532	61712114,61716016,61764736	0.894403
K562	chr6	43971372	43971415	43971379	+	High_confidence	28	28	93	3.995022	4.745756	chr6	43971282	43971492	SINE|MIR|MIRb	-	chr6	43971044	43999988	MSTRG.24360.1	+	43971044,43998950	43971704,43999988	0.946237
K562	chr12	14665626	14665645	14665635	+	High_confidence	3	4	11	0.472530	3.321928	chr12	14665652	14665749	LINE|L2|L2a	+	chr12	14665654	14757963	AC010168.1|ENST00000501178.2	+	14665654,14665858,14672265,14718034,14757594	14665697,14666013,14672314,14718075,14757963	0.818182
K562	chr10	32446977	32446989	32446977	+	High_confidence	4	4	14	0.601401	3.180833	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.785714
K562	chr3	50226714	50226715	50226714	+	High_confidence	10	10	13	0.558444	3.251629	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	0.846154
K562	chr6	32131217	32131232	32131231	-	High_confidence	4	5	10	0.429572	2.646439	chr6	32130987	32131259	SINE|Alu|AluSc5	+	chr6	32128706	32131660	MSTRG.24124.1	-	32128706,32130924	32129854,32131660	1.000000
K562	chr22	42519287	42519288	42519287	+	RAMPAGE_only	9	9	10	0.429572	2.641604	chr22	42519127	42519409	LINE|L2|L2c	-	chr22	42553616	42558412	SERHL2|ENST00000447870.6	+	42553616,42554937,42555231,42555663,42556063,42556513,42558347	42553713,42555087,42555345,42555705,42556083,42556588,42558412	0.500000
K562	chr12	91634218	91634238	91634226	-	High_confidence	102	123	438	18.815267	6.346455	chr12	91633760	91635553	LTR|ERV1|LTR12C	+	chr12	91584877	91634227	MSTRG.6562.1	-	91584877,91587166,91633724	91585466,91587282,91634227	0.844749
K562	chr6	67888605	67888726	67888645	-	High_confidence	20	28	179	7.689344	5.060581	chr6	67881436	67888662	LTR|ERV1|HERVH-int	-	chr6	67876872	67889339	MSTRG.24450.1	-	67876872,67886967,67888910	67881452,67888821,67889339	1.000000
K562	chr8	85378112	85378113	85378112	-	High_confidence	101	112	133	5.713312	3.862442	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.992481
K562	chr1	139928	139953	139952	-	High_confidence	13	14	47	2.018990	4.898456	chr1	139707	140127	DNA|hAT-Charlie|MER1A	-	chr1	134772	140566	LOC729737|NR_039983.2	-	134772,139789,140074	139696,139847,140566	0.957447
K562	chr7	99506783	99506797	99506783	+	High_confidence	5	5	14	0.601401	2.502736	chr7	99506691	99506995	SINE|Alu|AluY	-	chr7	99506004	99533822	ZKSCAN5|NM_001318084.1	+	99506004,99512452,99519826,99525812,99531107	99506458,99512591,99519909,99526418,99533822	0.500000
K562	chr11	64242601	64242620	64242619	+	High_confidence	38	41	126	5.412611	5.318839	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
K562	chr14	28830242	28830255	28830244	+	High_confidence	127	222	372	15.980090	6.558776	chr14	28830132	28830430	SINE|Alu|AluY	-	chr14	28830243	28842337	LINC02327|ENST00000550827.5	+	28830243,28832005,28837252,28841952	28830502,28832060,28837330,28842337	0.543011
K562	chr19	28535440	28535455	28535440	-	High_confidence	2	2	10	0.429572	2.921928	chr19	28535245	28535742	LTR|ERVL?|LTR55	+	chr19	28437059	28535277	AC005381.1|ENST00000593065.5	-	28437059,28437581,28466401,28535099	28437134,28437718,28466780,28535277	0.700000
K562	chr1	28506216	28506252	28506216	+	High_confidence	12	13	26	1.116888	4.363713	chr1	28506187	28506484	SINE|Alu|AluSx	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.807692
K562	chr19	45739653	45739680	45739653	+	RAMPAGE_only	6	6	23	0.988016	4.011365	chr19	45739451	45739778	LTR|ERVL-MaLR|MLT1K	-	chr19	45733250	45764534	BHMG1|ENST00000457052.2	+	45733250,45735376,45739625,45745191,45750674,45753650,45754478,45755969,45757176,45758877,45759413,45761678,45761938,45763337,45763970	45733666,45735447,45739730,45745321,45750786,45753788,45754724,45756078,45757277,45759033,45759490,45761867,45762183,45763427,45764534	0.695652
K562	chr15	90902021	90902098	90902081	+	High_confidence	9	9	43	1.847161	5.129639	chr15	90901818	90902167	LTR|ERVL-MaLR|MLT1A0	-	chr15	90902217	90905336	MAN2A2|ENST00000558290.5	+	90902217,90903230,90904189,90905250	90902526,90903734,90904339,90905336	1.000000
K562	chr7	101308299	101308325	101308324	+	High_confidence	100	114	340	14.605458	6.587566	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.902941
K562	chr5	67818311	67818392	67818379	-	High_confidence	14	14	71	3.049963	4.074507	chr5	67817944	67823959	LINE|L1|L1PA3	+	chr5	67699450	67818322	AC106798.1|ENST00000506819.1	-	67699450,67701490,67817939,67818279	67699725,67701652,67818048,67818322	0.816901
K562	chr12	23721572	23721573	23721572	-	High_confidence	83	85	113	4.854167	5.460246	chr12	23721420	23721615	DNA|hAT-Charlie|Charlie10b	+	chr12	23533169	23721559	MSTRG.5846.4	-	23533169,23536452,23543210,23546315,23563257,23575660,23604386,23640811,23665443,23721433	23534522,23536669,23543384,23546424,23563403,23575838,23604533,23640897,23665567,23721559	0.840708
K562	chr2	107746845	107746864	107746856	-	High_confidence	2	2	8	0.343658	2.521641	chr2	107746623	107747902	LTR|ERV1|LTR12C	-	chr2	107689453	107746936	MSTRG.16349.3	-	107689453,107698848,107703249,107717102,107746545	107693155,107700064,107703320,107717247,107746936	0.750000
K562	chr10	22218014	22218015	22218014	-	RAMPAGE_only	39	40	50	2.147862	4.653089	chr10	22217832	22218195	LTR|ERVL-MaLR|THE1D	-	chr10	22208813	22210021	EBLN1|ENST00000422359.2	-	22208813	22210021	0.940000
K562	chr1	154671592	154671593	154671592	+	High_confidence	324	325	331	14.218843	5.086534	chr1	154670567	154671998	LTR|ERV1|LTR12C	+	chr1	154671605	154680268	MSTRG.1928.1	+	154671605,154677613	154672084,154680268	0.978852
K562	chrX	63434354	63434392	63434380	-	RAMPAGE_only	13	13	34	1.460546	4.354852	chrX	63434043	63434561	LTR|ERV1|LTR46-int	-	chrX	63426559	63431612	LINC01278|ENST00000608623.1	-	63426559	63431612	0.588235
K562	chr8	99893471	99893492	99893471	-	High_confidence	3	3	20	0.859145	3.431624	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.900000
K562	chr20	62776856	62776858	62776856	-	High_confidence	113	151	168	7.216815	6.000333	chr20	62776675	62776888	LTR|ERVL|LTR16A	-	chr20	62774120	62776856	LINC00659|NR_046225.1	-	62774120,62775314,62776805	62774569,62775386,62776856	0.547619
K562	chr16	15574172	15574176	15574173	-	High_confidence	8	17	22	0.945059	3.916127	chr16	15574003	15574370	LTR|ERVL-MaLR|THE1D	-	chr16	15571814	15574162	MSTRG.10452.1	-	15571814	15574162	0.772727
K562	chr6	31494690	31494735	31494690	+	High_confidence	2	2	12	0.515487	3.022055	chr6	31494550	31494850	SINE|Alu|AluSp	+	chr6	31494880	31511124	MICB|NM_001289160.1	+	31494880,31505616,31506142,31507021,31507399,31509781	31494995,31505871,31506430,31507300,31507531,31511124	1.000000
K562	chr22	16611837	16611861	16611860	+	High_confidence	16	19	29	1.245760	3.909368	chr22	16611747	16614708	LTR|ERV1|HERVH-int	+	chr22	16612581	16615104	AP000547.3|ENST00000588548.1	+	16612581	16615104	0.965517
K562	chr15	83169278	83169301	83169278	-	High_confidence	51	63	108	4.639381	5.500643	chr15	83167578	83169318	LINE|L1|L1PA16	+	chr15	83157350	83169231	HDGFL3|ENST00000562702.2	-	83157350,83157902,83163998,83169221	83157573,83158041,83164075,83169231	0.944444
K562	chr16	15577122	15577123	15577122	+	High_confidence	40	40	57	2.448562	4.770420	chr16	15576751	15577391	LTR|ERV1|LTR9D	-	chr16	15577133	15587357	C16orf45|ENST00000565913.1	+	15577133,15581216,15583155,15586716	15577228,15581331,15583238,15587357	0.719298
K562	chr2	170366077	170366078	170366077	+	High_confidence	110	111	114	4.897124	2.717059	chr2	170365786	170366230	LTR|ERVL|LTR32	+	chr2	170365910	170444587	MSTRG.16824.9	+	170365910,170369221,170382015,170383072,170383709,170386188,170387105,170391519,170392380,170400187,170401480,170402847,170404246,170405544,170407714,170443966	170366122,170369377,170382112,170383189,170383814,170386272,170387308,170391618,170392495,170400314,170401691,170402995,170404400,170405633,170407844,170444587	0.956140
K562	chr1	212790848	212790888	212790848	+	High_confidence	3	5	14	0.601401	3.182006	chr1	212790640	212790952	SINE|Alu|AluY	+	chr1	212791827	212816825	TATDN3|NM_001042552.2	+	212791827,212795094,212796516,212797111,212802700,212804319,212804595,212807735,212812247,212815012	212791987,212795127,212796590,212797196,212802763,212804429,212804651,212807848,212812328,212816825	0.714286
K562	chr13	94500318	94500324	94500318	-	RAMPAGE_only	7	8	15	0.644358	3.240224	chr13	94500192	94500527	LTR|ERVL-MaLR|THE1B	-	chr13	94437303	94479682	DCT|NM_001129889.2	-	94437303,94443435,94445718,94452606,94460090,94462009,94465632,94466557,94468745,94478960	94440076,94443637,94445761,94452662,94460226,94462189,94465799,94466658,94469045,94479682	0.933333
K562	chr20	48756928	48756929	48756928	-	RAMPAGE_only	16	19	22	0.945059	4.021928	chr20	48756765	48757124	LTR|ERVL-MaLR|THE1B	-	chr20	48624251	48827883	PREX1|ENST00000371941.3	-	48624251,48627547,48627860,48629448,48630727,48632276,48632495,48634675,48636462,48637710,48639765,48642167,48642406,48644408,48645850,48649299,48649995,48650893,48651395,48652585,48653360,48655289,48657039,48658135,48659918,48666282,48676192,48679359,48679650,48681234,48688656,48690946,48692671,48700752,48708259,48726289,48734545,48745024,48747808,48827641	48625927,48627615,48627963,48629621,48630794,48632391,48632639,48634775,48636683,48637752,48639894,48642258,48642489,48644497,48646057,48649576,48650206,48651055,48651583,48652706,48653497,48655375,48657188,48658228,48660061,48666355,48676268,48679409,48679754,48681335,48688804,48691096,48692790,48700886,48708421,48726391,48734650,48745147,48747880,48827883	0.545455
K562	chr12	71118422	71118538	71118422	-	High_confidence	10	10	96	4.123894	4.883917	chr12	71118072	71124103	LINE|L1|L1PA2	+	chr12	71110218	71118538	MSTRG.6462.2	-	71110218,71115849,71118069	71110453,71115958,71118538	0.708333
K562	chr3	101638298	101638374	101638373	+	RAMPAGE_only	51	54	165	7.087943	5.493006	chr3	101632599	101641508	LTR|ERV1|HERVS71-int	+	chr3	101632442	101642813	MSTRG.20150.2	+	101632442,101636953	101632805,101642813	0.975758
K562	chr16	67278785	67278797	67278785	+	High_confidence	6	6	13	0.558444	3.251629	chr16	67278693	67278838	SINE|MIR|MIRb	-	chr16	67278833	67280368	PLEKHG4|ENST00000565773.1	+	67278833,67279875	67278882,67280368	0.615385
K562	chr4	10461143	10461167	10461166	-	High_confidence	2	2	8	0.343658	2.521641	chr4	10461092	10461194	SINE|MIR|MIR	+	chr4	10439879	10461366	MSTRG.21136.2	-	10439879,10454593,10461052	10446539,10454988,10461366	0.750000
K562	chr7	145784963	145785001	145784981	+	High_confidence	71	72	254	10.911137	6.316291	chr7	145784929	145785235	LTR|ERV1|MER50B	+	chr7	145784987	145853919	MSTRG.26654.1	+	145784987,145842490,145848295	145785433,145842584,145853919	0.968504
K562	chr1	18909631	18909632	18909631	+	High_confidence	83	83	83	3.565450	4.515487	chr1	18909439	18909778	LTR|ERVL-MaLR|THE1C	+	chr1	18909623	18913583	MSTRG.414.1	+	18909623,18910433,18913399	18909720,18912720,18913583	0.939759
K562	chr8	57978399	57978441	57978421	+	High_confidence	23	23	53	2.276733	4.197853	chr8	57978204	57978556	LTR|ERVL-MaLR|THE1A	+	chr8	57978357	57984126	LINC01602|ENST00000522992.1	+	57978357,57980893,57982265	57978484,57981014,57984126	0.792453
K562	chr9	123236936	123236952	123236936	-	RAMPAGE_only	2	2	7	0.300701	2.584963	chr9	123236851	123237154	SINE|Alu|AluSz	+	chr9	123179006	123213908	STRBP|ENST00000479114.2	-	123179006,123184131,123212584,123213588	123179227,123184298,123212708,123213908	0.857143
K562	chr3	101632414	101632415	101632414	+	High_confidence	6	6	8	0.343658	3.000000	chr3	101632044	101632597	LTR|ERV1|LTR6A	+	chr3	101632399	101642763	MSTRG.20150.1	+	101632399,101636511	101632805,101642763	1.000000
K562	chr2	3536839	3536879	3536845	-	High_confidence	22	22	144	6.185841	6.125512	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.798611
K562	chr11	26597182	26597194	26597182	-	RAMPAGE_only	24	24	49	2.104904	4.815123	chr11	26597150	26597675	LTR|ERV1|LTR17	-	chr11	26559031	26572268	MUC15|NM_145650.3	-	26559031,26563115,26565164,26572040	26561225,26563265,26565896,26572268	0.551020
K562	chr12	83118184	83118204	83118184	+	RAMPAGE_only	3	3	12	0.515487	3.418296	chr12	83117931	83122848	LINE|L1|L1PB1	-	chr12	82758554	83134302	TMTC2|ENST00000549919.1	+	82758554,82760871,82857009,82895817,82930430,82965023,82965559,82966918,82985924,83030797,83050903,83061767,83132209	82760359,82760936,82857580,82896646,82930545,82965109,82965744,82966997,82986046,83030879,83051018,83061831,83134302	1.000000
K562	chr9	129488735	129488857	129488856	+	High_confidence	41	41	203	8.720318	5.336600	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.970443
K562	chr7	10973307	10973336	10973307	+	High_confidence	5	5	20	0.859145	3.616349	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.600000
K562	chr3	139344652	139344656	139344652	+	High_confidence	4	4	11	0.472530	2.846439	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.636364
K562	chr21	38121204	38121210	38121209	-	High_confidence	6	6	17	0.730273	3.169249	chr21	38121046	38121183	LTR|ERVL|LTR16A	-	chr21	38093243	38121331	DSCR4|ENST00000482032.1	-	38093243,38094757,38097266,38099276,38120306,38121127	38093348,38094840,38097509,38099338,38120408,38121331	0.588235
K562	chr7	129768503	129768540	129768531	-	High_confidence	2	2	9	0.386615	2.750000	chr7	129768333	129768637	SINE|Alu|AluY	+	chr7	129763062	129769357	MSTRG.26453.1	-	129763062,129767886,129768687	129763406,129767958,129769357	0.666667
K562	chr8	141340541	141340578	141340541	+	High_confidence	8	8	26	1.116888	3.819774	chr8	141340243	141340799	LTR|ERV1|MER4B	-	chr8	141340548	141344621	LINC01300|ENST00000521073.5	+	141340548,141342340,141342957,141344343	141340672,141342476,141343215,141344621	0.884615
K562	chr4	65241805	65241824	65241805	-	High_confidence	10	13	45	1.933075	4.419305	chr4	65241173	65242746	LTR|ERV1|MER52A	-	chr4	65222367	65241809	MSTRG.21431.1	-	65222367,65241181	65222427,65241809	0.977778
K562	chr2	96895357	96895369	96895357	-	High_confidence	3	3	9	0.386615	2.500000	chr2	96894981	96895398	LINE|L1|L1MC5a	-	chr2	96875881	96895162	FAM178B|NM_001172667.1	-	96875881,96877889,96878415,96893925,96895060	96876308,96878042,96878493,96894051,96895162	0.888889
K562	chr13	108779656	108779688	108779662	+	High_confidence	6	13	27	1.159845	4.209867	chr13	108779268	108779937	LTR|ERVL|LTR41C	-	chr13	108779541	108785740	MYO16|ENST00000467639.1	+	108779541,108785634	108780052,108785740	0.777778
K562	chr5	132558845	132558856	132558845	+	RAMPAGE_only	10	10	20	0.859145	3.921928	chr5	132558752	132558917	SINE|Alu|AluJb	+	chr5	132557230	132595768	RAD50|ENST00000453394.5	+	132557230,132559283,132575776,132579316,132579861,132587561,132587923,132588686,132589630,132591876,132594868,132595572	132557453,132559367,132575928,132579502,132580066,132587690,132588089,132588880,132589837,132592034,132595044,132595768	0.950000
K562	chr19	56313362	56313366	56313362	-	RAMPAGE_only	4	5	8	0.343658	2.521641	chr19	56313201	56313542	LTR|ERVL-MaLR|THE1B	-	chr19	56224792	56314513	ZSCAN5A|ENST00000588955.5	-	56224792,56313282,56314420	56225173,56313384,56314513	0.500000
K562	chr12	71118278	71118308	71118278	-	High_confidence	9	10	35	1.503503	3.530025	chr12	71118072	71124103	LINE|L1|L1PA2	+	chr12	71110218	71118538	MSTRG.6462.2	-	71110218,71115849,71118069	71110453,71115958,71118538	0.542857
K562	chrX	10134283	10134320	10134283	+	RAMPAGE_only	6	6	32	1.374631	4.562500	chrX	10133972	10134368	LINE|L2|L2a	-	chrX	10015754	10144478	WWC3|NM_015691.3	+	10015754,10063444,10067286,10078798,10079724,10090770,10094131,10098505,10109777,10116417,10117123,10122618,10124264,10125023,10126113,10127987,10128556,10129955,10134431,10136632,10138708,10139412,10141434	10015858,10063554,10067490,10078875,10079804,10090900,10094281,10098579,10110020,10116507,10117689,10122739,10124339,10125110,10126306,10128161,10128708,10130121,10134596,10136725,10138936,10139540,10144478	0.968750
K562	chr21	19493557	19493608	19493561	-	High_confidence	30	34	128	5.498526	5.879708	chr21	19493426	19494814	LTR|ERV1|LTR12C	+	chr21	19276249	19494034	MSTRG.18263.2	-	19276249,19344476,19493424	19277418,19344565,19494034	0.515625
K562	chr19	55643230	55643235	55643230	+	RAMPAGE_only	4	4	8	0.343658	2.807355	chr19	55643240	55643348	SINE|MIR|MIRb	+	chr19	55642096	55643470	ZNF580|NM_001163423.1	+	55642096,55642496	55642148,55643470	0.750000
K562	chr2	208542690	208542768	208542766	+	High_confidence	30	71	180	7.732302	6.315511	chr2	208542564	208543130	LTR|ERVL|MLT2B3	-	chr2	208542641	208825587	LOC101927960|NR_136588.1	+	208542641,208572012,208656825,208819551,208824194,208825398	208542991,208572167,208656989,208819655,208824350,208825587	0.850000
K562	chr19	28535318	28535337	28535335	-	High_confidence	17	21	32	1.374631	4.481728	chr19	28535245	28535742	LTR|ERVL?|LTR55	+	chr19	28437059	28535277	AC005381.1|ENST00000593065.5	-	28437059,28437581,28466401,28535099	28437134,28437718,28466780,28535277	0.531250
K562	chr12	12110981	12110982	12110981	+	High_confidence	88	106	116	4.983039	4.765396	chr12	12110866	12110982	SINE|Alu|AluJb	+	chr12	12111162	12111489	AC007537.1|ENST00000539347.1	+	12111162	12111489	0.534483
K562	chr4	118836008	118836030	118836008	-	High_confidence	4	4	10	0.429572	2.725481	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.900000
K562	chrX	48683362	48683363	48683362	+	High_confidence	92	113	114	4.897124	4.216458	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.973684
K562	chr5	137997936	137997948	137997946	-	RAMPAGE_only	12	25	40	1.718289	4.932138	chr5	137997891	137998211	LTR|ERV1|MER57E1	+	chr5	137937959	138033031	FAM13B|ENST00000033079.7	-	137937959,137941943,137942874,137943132,137945901,137946227,137948954,137952627,137953335,137954165,137959615,137960165,137962404,137985256,137987460,137988273,138006989,138011007,138011767,138018301,138018954,138021030,138032781	137940348,137942045,137943038,137943216,137945997,137946311,137949184,137952709,137953465,137954376,137959763,137960214,137962469,137985389,137987616,137988315,138007147,138011149,138011945,138018514,138019146,138021197,138033031	0.675000
K562	chr1	65422487	65422501	65422487	+	RAMPAGE_only	3	3	12	0.515487	3.277613	chr1	65422070	65422538	LTR|ERVL-MaLR|MLT1C	+	chr1	65420667	65436007	MSTRG.1188.6	+	65420667,65425302,65427781,65431802	65420740,65425378,65430048,65436007	0.500000
K562	chr12	10363649	10363663	10363662	+	High_confidence	9	12	18	0.773230	3.454822	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.611111
K562	chr20	37298760	37298761	37298760	+	RAMPAGE_only	15	15	15	0.644358	3.006239	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
K562	chr21	22209919	22209936	22209919	+	High_confidence	60	60	184	7.904130	5.909880	chr21	22209807	22210118	SINE|Alu|AluY	-	chr21	22209938	22420819	AP000561.1|ENST00000444130.1	+	22209938,22212734,22420769	22210244,22212813,22420819	0.663043
K562	chr17	59619894	59619923	59619894	+	High_confidence	2936	4325	12603	541.389979	5.274270	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.984369
K562	chr4	78715764	78715797	78715796	+	High_confidence	34	37	183	7.861173	5.632941	chr4	78715552	78716054	LTR|ERV1|HERVH-int	-	chr4	78716041	78743177	MSTRG.21535.1	+	78716041,78742899	78716135,78743177	0.803279
K562	chr3	101632480	101632490	101632489	+	High_confidence	9	9	17	0.730273	3.057476	chr3	101632044	101632597	LTR|ERV1|LTR6A	+	chr3	101632442	101642813	MSTRG.20150.2	+	101632442,101636953	101632805,101642813	0.823529
K562	chr7	102973355	102973383	102973355	-	High_confidence	4	4	15	0.644358	3.521641	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102883571	102973219	FBXL13|ENST00000477915.5	-	102883571,102884213,102913085,102926273,102963532,102968021,102973149	102883685,102884312,102913215,102926374,102963665,102968117,102973219	0.600000
K562	chr6	151791373	151791374	151791373	+	RAMPAGE_only	11	13	14	0.601401	3.324863	chr6	151791178	151791542	LTR|ERVL-MaLR|THE1B	+	chr6	151804430	152099053	ESR1|ENST00000338799.9	+	151804430,151807842,151842596,151880654,151944172,152011655,152060990,152094384,152098731	151805820,151808364,151842787,151880771,151944508,152011794,152061124,152094568,152099053	0.928571
K562	chr7	100082683	100082745	100082693	-	High_confidence	13	13	68	2.921092	5.290355	chr7	100082615	100083179	LTR|ERV1|LTR43	+	chr7	100069970	100082548	ZNF3|NM_001278287.1	-	100069970,100075134,100075541,100077302,100079535,100082300	100072212,100075261,100075630,100077433,100079572,100082548	0.602941
K562	chr5	10308979	10309009	10309008	-	High_confidence	3	5	11	0.472530	2.646439	chr5	10308970	10309295	LTR|ERVL-MaLR|MLT1A0	+	chr5	10279276	10308958	MSTRG.22207.2	-	10279276,10282196,10286353,10288421,10290547,10307624,10308762	10280632,10282288,10286496,10288529,10290781,10307821,10308958	0.727273
K562	chr2	139410956	139410957	139410956	+	High_confidence	1544	1844	2007	86.215162	5.037441	chr2	139410158	139411367	LTR|ERV1|LTR12C	+	chr2	139410963	139430661	MSTRG.16624.1	+	139410963,139426653,139430571	139411571,139426762,139430661	0.963627
K562	chr18	976633	976649	976648	+	High_confidence	23	23	62	2.663348	3.966158	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976696	1159311	AP005328.1|ENST00000579835.5	+	976696,1061462,1133842,1137813,1159178	976895,1061535,1133894,1137864,1159311	0.677419
K562	chr12	64293379	64293381	64293379	-	High_confidence	13	27	27	1.159845	4.458591	chr12	64287349	64293377	LINE|L1|L1PA2	-	chr12	64266982	64293383	C12orf56|ENST00000536975.5	-	64266982,64270535,64274900,64275297,64277679,64284663,64285953,64293280	64267288,64270714,64274975,64275372,64277803,64284753,64286060,64293383	0.555556
K562	chrX	87728664	87728691	87728690	-	High_confidence	67	74	314	13.488570	5.486531	chrX	87728475	87728831	LTR|ERV1|MER61A	-	chrX	87723929	87728692	MSTRG.29610.1	-	87723929,87728443	87724212,87728692	0.980892
K562	chr10	103181328	103181329	103181328	-	High_confidence	21	21	21	0.902102	4.201841	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103181329	MSTRG.3791.1	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857,103181184	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982,103181329	0.666667
K562	chr5	70401437	70401505	70401478	+	RAMPAGE_only	15	18	158	6.787242	5.445820	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.936709
K562	chr17	30968689	30968690	30968689	-	RAMPAGE_only	10	10	11	0.472530	2.646439	chr17	30968374	30968687	SINE|Alu|AluY	-	chr17	30724981	30725181	AC127024.7|ENST00000625101.1	-	30724981	30725181	0.727273
K562	chr19	19944173	19944196	19944173	+	RAMPAGE_only	20	32	64	2.749263	3.134317	chr19	19943850	19944289	LTR|ERV1|LTR21A	+	chr19	19900967	19963464	ZNF93|ENST00000592245.1	+	19900967,19956737,19958488,19963118	19901039,19957016,19958554,19963464	0.921875
K562	chr6	144349109	144349119	144349109	+	RAMPAGE_only	6	6	11	0.472530	2.921928	chr6	144349009	144349307	SINE|Alu|AluY	-	chr6	144344100	144426328	UTRN|ENST00000421035.2	+	144344100,144403122,144421877,144423548,144423985,144426286	144344304,144403184,144421970,144423626,144424078,144426328	0.636364
K562	chr2	230342337	230342357	230342337	+	High_confidence	8	8	39	1.675332	4.753226	chr2	230337069	230342513	LINE|L1|L1HS	-	chr2	230342069	230372744	SP140L|ENST00000458341.1	+	230342069,230357804,230358963,230361613,230370907,230371597	230342173,230357967,230359132,230361697,230370967,230372744	0.769231
K562	chr8	128048586	128048587	128048586	+	RAMPAGE_only	20	20	23	0.988016	3.321324	chr8	128048611	128048781	SINE|MIR|MIRb	+	chr8	127890627	128101253	PVT1|ENST00000513868.6	+	127890627,127939507,127983903,127989161,128070159,128096517,128099369,128100979	127890998,127939676,127984204,127989291,128070272,128096654,128099573,128101253	1.000000
K562	chr8	144853500	144853543	144853542	-	High_confidence	3	3	16	0.687316	3.139572	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	0.875000
K562	chr20	1467719	1467736	1467735	-	High_confidence	17	18	40	1.718289	4.015510	chr20	1467673	1468159	LTR|ERV1|LTR10B	+	chr20	1442161	1467692	NSFL1C|ENST00000216879.8	-	1442161,1445665,1452492,1453030,1454212,1454966,1458199,1464328,1466719	1443911,1445830,1452630,1453140,1454305,1455132,1458274,1464426,1467692	0.975000
K562	chr15	82749681	82749703	82749702	+	RAMPAGE_only	6	6	10	0.429572	2.947703	chr15	82749521	82749958	LTR|ERVL-MaLR|MLT1C	+	chr15	82744222	82750289	AC105339.3|ENST00000558342.1	+	82744222,82749295	82744319,82750289	0.600000
K562	chr7	102973265	102973272	102973265	-	High_confidence	372	399	793	34.065084	6.321583	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102883571	102973219	FBXL13|ENST00000477915.5	-	102883571,102884213,102913085,102926273,102963532,102968021,102973149	102883685,102884312,102913215,102926374,102963665,102968117,102973219	0.533417
K562	chr15	81331892	81331893	81331892	+	High_confidence	22	23	32	1.374631	4.478232	chr15	81331558	81332203	LTR|ERV1|MER50	+	chr15	81331910	81516976	TMC3-AS1|ENST00000560851.2	+	81331910,81332344,81341561,81358335,81361918,81380208,81516502	81332023,81332541,81341708,81358503,81362036,81380260,81516976	0.843750
K562	chr4	85576361	85576376	85576368	+	High_confidence	58	60	169	7.259772	5.729257	chr4	85576147	85576443	SINE|Alu|AluY	+	chr4	85576161	86002357	MSTRG.21716.6	+	85576161,85721884,85923647,85942065,85972035,85974887,85977569,85994582,86000478	85576443,85721972,85923770,85942273,85972168,85974961,85977691,85995657,86002357	0.704142
K562	chr7	158863388	158863402	158863396	+	RAMPAGE_only	5	7	34	1.460546	4.594672	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.970588
K562	chr12	103835954	103835975	103835974	-	High_confidence	27	30	67	2.878134	4.998540	chr12	103835814	103836172	LTR|ERVL-MaLR|THE1A	-	chr12	103777999	103836420	MSTRG.6683.3	-	103777999,103780299,103785334,103785570,103787440,103788837,103793163,103793409,103793936,103796893,103798586,103806321,103806854,103814936,103835891	103778081,103780364,103785475,103785747,103787527,103788919,103793265,103793512,103793997,103797031,103798677,103806377,103806929,103815121,103836420	0.805970
K562	chr22	39874066	39874068	39874066	-	RAMPAGE_only	13	16	20	0.859145	3.260828	chr22	39873891	39874245	LTR|ERVL-MaLR|THE1B	-	chr22	39743043	39893790	ENTHD1|NM_152512.3	-	39743043,39765222,39820992,39835839,39861764,39887399,39893694	39744283,39765609,39821113,39835958,39862007,39887903,39893790	0.750000
K562	chr4	72038997	72039160	72039005	+	High_confidence	52	55	163	7.002029	4.807749	chr4	72038896	72039051	SINE|Alu|AluYc	-	chr4	72039131	72148201	NPFFR2|NM_053036.2	+	72039131,72128584,72138039,72146977	72039413,72128919,72138139,72148201	0.957055
K562	chr6	137954348	137954406	137954401	-	RAMPAGE_only	69	76	367	15.765304	6.648094	chr6	137954211	137954575	LTR|ERVL-MaLR|MLT1D	-	chr6	137943078	137945802	AL591468.1|ENST00000417932.1	-	137943078,137945668	137943517,137945802	0.730245
K562	chr5	97088999	97089079	97088999	+	High_confidence	380	392	1171	50.302917	5.421162	chr5	97088919	97089287	LTR|ERVL-MaLR|THE1B	+	chr5	97089074	97437217	LIX1-AS1|ENST00000504578.2	+	97089074,97101758,97103025,97183007,97183504,97431743,97436552	97089204,97102132,97103094,97183240,97183669,97431900,97437217	0.941930
K562	chr2	171433114	171433152	171433147	-	High_confidence	2	3	10	0.429572	2.921928	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.900000
K562	chr8	15581913	15581958	15581913	+	RAMPAGE_only	4	4	23	0.988016	3.136864	chr8	15576322	15582323	LINE|L1|L1PA2	-	chr8	15561618	15673836	TUSC3|ENST00000507400.1	+	15561618,15623079,15650696,15659506,15662155,15673746	15561685,15623249,15650814,15659647,15662296,15673836	0.869565
K562	chr5	102671398	102671464	102671398	-	High_confidence	17	19	66	2.835177	5.266041	chr5	102671229	102677260	LINE|L1|L1PA2	+	chr5	102608491	102671464	LINC00491|NR_103753.1	-	102608491,102636142,102671226	102609766,102636291,102671464	0.621212
K562	chr5	181028153	181028154	181028153	-	High_confidence	52	54	71	3.049963	5.477948	chr5	181028009	181028368	LTR|ERV1|LTR1A2	-	chr5	181027464	181028207	MSTRG.23622.1	-	181027464	181028207	0.845070
K562	chr12	54294206	54294212	54294206	-	RAMPAGE_only	14	14	36	1.546460	3.985968	chr12	54293985	54294257	SINE|Alu|AluYm1	+	chr12	54292172	54295758	NFE2|ENST00000540264.2	-	54292172,54295134	54293381,54295758	0.833333
K562	chr4	177227164	177227165	177227164	-	High_confidence	225	225	227	9.751291	5.514389	chr4	177226748	177228090	LTR|ERV1|LTR12C	-	chr4	177220068	177227151	MSTRG.22075.1	-	177220068,177226585,177226972	177220675,177226950,177227151	0.969163
K562	chr16	30354680	30354681	30354680	-	High_confidence	6	6	6	0.257743	2.584963	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	1.000000
K562	chr13	110965634	110965635	110965634	+	High_confidence	5	5	8	0.343658	2.500000	chr13	110965259	110965842	LTR|ERV1|LTR10F	+	chr13	110965703	110990579	LINC00431|ENST00000440735.2	+	110965703,110976926,110983291,110989979	110966119,110976978,110983412,110990579	0.875000
K562	chr9	98833440	98833462	98833461	+	RAMPAGE_only	38	46	145	6.228798	5.830294	chr9	98833358	98833701	LINE|L2|L2	-	chr9	98837074	98844522	GALNT12|ENST00000615204.1	+	98837074,98840001,98844095	98837148,98840133,98844522	0.537931
K562	chr10	17386935	17386963	17386935	+	High_confidence	115	120	363	15.593475	5.026632	chr10	17386606	17386994	LTR|ERV1|MER48	-	chr10	17386935	17408286	ST8SIA6-AS1|NR_034129.1	+	17386935,17399104,17407967	17387075,17399202,17408286	0.870523
K562	chr3	197299316	197299331	197299319	-	High_confidence	3	4	12	0.515487	3.277613	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.833333
K562	chr7	12589324	12589349	12589348	+	High_confidence	88	104	251	10.782265	5.698199	chr7	12589215	12589522	SINE|Alu|AluY	-	chr7	12589428	12622884	SCIN|ENST00000518849.1	+	12589428,12596269,12604513,12622800	12589573,12596426,12604663,12622884	0.868526
K562	chrX	155025946	155025947	155025946	+	High_confidence	7	7	9	0.386615	2.750000	chrX	155025845	155026144	SINE|Alu|AluY	-	chrX	155025979	155051732	FUNDC2|ENST00000475165.5	+	155025979,155026610,155033402,155046508,155051669	155026151,155026680,155033553,155046584,155051732	0.777778
K562	chr19	34860565	34860646	34860565	-	High_confidence	72	76	425	18.256823	4.222155	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.870588
K562	chr12	123390748	123390773	123390748	+	High_confidence	5	6	19	0.816187	3.721612	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.947368
K562	chr6	10481968	10481969	10481968	-	RAMPAGE_only	10	10	10	0.429572	3.321928	chr6	10481698	10483280	LTR|ERV1|LTR12C	-	chr6	10474499	10478502	LINC02522|ENST00000431401.1	-	10474499,10478340	10474593,10478502	0.500000
K562	chr7	99410112	99410113	99410112	+	High_confidence	11	11	15	0.644358	3.521641	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.800000
K562	chr2	81481734	81481754	81481734	+	High_confidence	18	32	79	3.393621	4.967369	chr2	81481147	81482372	LTR|ERV1|LTR2752	-	chr2	81481745	81570522	MSTRG.16153.1	+	81481745,81548617,81570321	81482104,81548747,81570522	0.759494
K562	chr8	2726956	2726963	2726962	+	High_confidence	104	104	329	14.132929	6.529896	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2726929	2926569	MSTRG.26841.1	+	2726929,2804585,2834348,2834771,2836783,2837729,2919186,2925764,2926149	2727493,2804709,2834577,2834876,2836918,2837764,2919318,2925811,2926569	0.905775
K562	chr11	113665231	113665271	113665234	-	High_confidence	36	37	137	5.885141	5.608839	chr11	113665121	113665578	LTR|ERV1|LTR10B	+	chr11	113663093	113665275	MSTRG.5274.1	-	113663093,113665088	113663999,113665275	0.605839
K562	chr19	58306116	58306170	58306116	+	High_confidence	6	9	34	1.460546	4.093139	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.500000
K562	chr19	28607011	28607082	28607011	+	High_confidence	11	11	51	2.190819	4.961354	chr19	28606838	28607227	LTR|ERV1|HERVE-int	+	chr19	28606687	28615229	MSTRG.14552.4	+	28606687,28612438	28612061,28615229	0.960784
K562	chr11	118102914	118102939	118102938	+	High_confidence	5	5	21	0.902102	3.681881	chr11	118102849	118103028	SINE|MIR|MIRc	-	chr11	118102939	118108867	TMPRSS4|ENST00000519813.1	+	118102939,118104690,118107773,118108855	118103253,118104820,118107875,118108867	0.619048
K562	chrX	16712889	16712907	16712889	-	High_confidence	3	3	7	0.300701	2.584963	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.857143
K562	chr16	1963499	1963519	1963518	-	High_confidence	4	4	11	0.472530	3.121928	chr16	1963335	1963598	SINE|Alu|AluSx3	+	chr16	1962060	1963256	RPS2|ENST00000526586.6	-	1962060,1962735,1963148	1962656,1962909,1963256	0.909091
K562	chr7	12589496	12589497	12589496	+	High_confidence	6	6	8	0.343658	2.807355	chr7	12589215	12589522	SINE|Alu|AluY	-	chr7	12589522	12653603	SCIN|NM_033128.3	+	12589522,12604513,12622800,12625009,12625761,12626583,12629100,12636044,12640346,12644137,12644583,12649466,12651840,12652587	12589573,12604663,12622893,12625142,12625850,12626799,12629222,12636135,12640517,12644315,12644705,12649544,12651901,12653603	0.875000
K562	chr2	107746940	107746941	107746940	-	High_confidence	1751	1760	1953	83.895472	5.564072	chr2	107746623	107747902	LTR|ERV1|LTR12C	-	chr2	107677880	107746944	MSTRG.16349.2	-	107677880,107693043,107698848,107703249,107746545	107678651,107693155,107699067,107703320,107746944	0.900154
K562	chr11	36557171	36557192	36557191	+	RAMPAGE_only	7	7	17	0.730273	3.327820	chr11	36551606	36557636	LINE|L1|L1HS	-	chr11	36568012	36579762	RAG1|NM_000448.2	+	36568012,36573290	36568122,36579762	0.647059
K562	chr8	30653948	30653995	30653972	-	RAMPAGE_only	22	22	66	2.835177	4.867394	chr8	30653838	30654118	SINE|Alu|AluJb	+	chr8	30607103	30657005	GTF2E2|ENST00000518599.5	-	30607103,30612298,30614607,30635031,30653432,30656868	30607150,30612481,30614715,30635123,30653602,30657005	0.757576
K562	chr4	37001805	37001830	37001805	+	High_confidence	222	237	398	17.096978	6.665089	chr4	37001705	37002035	LTR|ERV1|MER48	+	chr4	37001815	37020708	AL136537.2|ENST00000562049.1	+	37001815,37018317	37001895,37020708	0.645729
K562	chr1	27525736	27525777	27525738	+	High_confidence	6	10	42	1.804204	4.647322	chr1	27525728	27525810	LINE|L2|L2b	+	chr1	27525745	27534500	MSTRG.589.1	+	27525745,27530285,27534340	27525885,27530506,27534500	0.714286
K562	chr10	17216310	17216355	17216310	-	RAMPAGE_only	33	34	60	2.577434	5.167482	chr10	17216274	17216354	LTR|ERV1|HERVIP10FH-int	+	chr10	17214238	17226898	VIM-AS1|ENST00000437232.5	-	17214238,17216166,17217601,17226855	17215364,17216274,17217675,17226898	0.933333
K562	chr3	27821482	27821540	27821538	+	High_confidence	27	31	67	2.878134	4.712373	chr3	27815983	27821983	LINE|L1|L1PA7	-	chr3	27821487	27891301	LINC01980|ENST00000414382.5	+	27821487,27824649,27891094	27821724,27824748,27891301	0.611940
K562	chr7	74347566	74347567	74347566	-	High_confidence	76	76	76	3.264750	5.032394	chr7	74347272	74347567	SINE|Alu|AluY	-	chr7	74347248	74347565	MSTRG.25885.1	-	74347248	74347565	0.921053
K562	chr16	79845776	79845791	79845790	-	High_confidence	4	4	10	0.429572	2.725481	chr16	79845761	79845946	SINE|MIR|MIRb	-	chr16	79841878	79845879	MSTRG.11347.2	-	79841878,79842200	79842140,79845879	0.800000
K562	chr12	46266488	46266495	46266488	-	High_confidence	6	6	12	0.515487	3.418296	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.750000
K562	chr6	142030417	142030446	142030425	-	High_confidence	98	113	478	20.533556	5.754517	chr6	142030076	142030610	LTR|ERVL|MLT2A2	-	chr6	141848491	142030433	MSTRG.25022.1	-	141848491,141850131,141900322,141909897,142030162	141849464,141850160,141900410,141910011,142030433	0.861925
K562	chr8	95090831	95090832	95090831	+	RAMPAGE_only	10	11	11	0.472530	2.646439	chr8	95090633	95091110	LTR|ERVL|MLT2A1	+	chr8	95100393	95103457	NDUFAF6|ENST00000521063.1	+	95100393,95101131,95102975	95100528,95101226,95103457	0.818182
K562	chr1	157273706	157273749	157273724	+	RAMPAGE_only	5	6	26	1.116888	4.315824	chr1	157273297	157273792	LTR|ERV1|LTR21A	-	chr1	157274866	157284082	MSTRG.2047.1	+	157274866,157282577	157274922,157284082	0.846154
K562	chr10	87435028	87435029	87435028	-	RAMPAGE_only	6	7	8	0.343658	2.750000	chr10	87434768	87435259	LINE|L2|L2a	+	chr10	87397061	87424792	LINC00864|ENST00000447936.1	-	87397061,87398046,87424763	87397389,87398200,87424792	0.625000
K562	chr1	235330459	235330467	235330459	+	RAMPAGE_only	56	71	100	4.295723	5.639401	chr1	235330202	235330492	SINE|Alu|AluYf1	+	chr1	235329028	235342559	GGPS1|ENST00000497327.1	+	235329028,235335241,235341707,235342010	235329183,235335334,235341778,235342559	0.880000
K562	chr1	148156233	148156248	148156236	+	High_confidence	53	55	157	6.744285	6.517302	chr1	148155782	148156403	LTR|ERV1|MER51D	+	chr1	148156050	148158546	MSTRG.1734.2	+	148156050,148156789	148156547,148158546	0.719745
K562	chr14	100166844	100166889	100166888	-	RAMPAGE_only	5	5	15	0.644358	3.664498	chr14	100166843	100167148	SINE|Alu|AluY	+	chr14	100143956	100160163	DEGS2|ENST00000305631.6	-	100143956,100148967,100159505	100146907,100149710,100160163	0.733333
K562	chr4	85576217	85576218	85576217	+	High_confidence	108	109	126	5.412611	3.364825	chr4	85576147	85576443	SINE|Alu|AluY	+	chr4	85576161	86002357	MSTRG.21716.6	+	85576161,85721884,85923647,85942065,85972035,85974887,85977569,85994582,86000478	85576443,85721972,85923770,85942273,85972168,85974961,85977691,85995657,86002357	0.984127
K562	chr7	137963049	137963087	137963074	-	RAMPAGE_only	2	2	11	0.472530	3.459432	chr7	137962967	137963076	LINE|CR1|L3b	-	chr7	137912823	137933890	CREB3L2|ENST00000458726.5	-	137912823,137915836,137928149,137933762	137913078,137916012,137928366,137933890	0.636364
K562	chr11	118102993	118103028	118102993	+	RAMPAGE_only	3	3	8	0.343658	2.750000	chr11	118102849	118103028	SINE|MIR|MIRc	-	chr11	118077093	118118457	TMPRSS4|ENST00000522824.5	+	118077093,118094815,118098984,118103100,118104690,118107788,118108855,118111740,118113268,118114828,118115137,118117304,118117901	118077305,118094855,118099098,118103253,118104820,118107875,118108896,118111900,118113435,118114927,118115280,118117454,118118457	0.750000
K562	chr4	74330505	74330549	74330531	-	High_confidence	15	18	77	3.307707	4.956812	chr4	74330456	74330945	LTR|ERV1|LTR15	+	chr4	74276634	74331393	MSTRG.21490.1	-	74276634,74330197,74331320	74278778,74330304,74331393	0.727273
K562	chr11	58578102	58578133	58578102	-	High_confidence	6	7	23	0.988016	4.175736	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.739130
K562	chr6	125644438	125644499	125644438	-	High_confidence	13	13	109	4.682338	5.046315	chr6	125644268	125645697	LTR|ERV1|LTR12C	+	chr6	125578523	125644467	MSTRG.24879.1	-	125578523,125644266	125578725,125644467	0.633028
K562	chr3	24505757	24505761	24505760	-	RAMPAGE_only	8	11	21	0.902102	3.576618	chr3	24505476	24505915	LTR|ERVL-MaLR|MLT1H	-	chr3	24496271	24499580	AC012087.1|ENST00000608068.1	-	24496271,24499513	24497013,24499580	0.714286
K562	chr1	200675056	200675057	200675056	+	RAMPAGE_only	10	10	15	0.644358	3.240224	chr1	200674973	200675322	LINE|L2|L2c	-	chr1	200669506	200694250	LOC101929224|NR_110787.1	+	200669506,200690308,200693752	200669622,200690430,200694250	0.733333
K562	chr16	79845869	79845884	79845869	-	High_confidence	9	9	27	1.159845	4.213661	chr16	79845761	79845946	SINE|MIR|MIRb	-	chr16	79841878	79845879	MSTRG.11347.2	-	79841878,79842200	79842140,79845879	0.888889
K562	chr19	5680196	5680252	5680248	-	High_confidence	28	28	115	4.940082	5.484323	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.965217
K562	chr7	158859026	158859044	158859034	+	RAMPAGE_only	6	8	17	0.730273	3.875000	chr7	158858991	158859159	SINE|Alu|AluJb	-	chr7	158856577	158946192	WDR60|NM_018051.4	+	158856577,158869854,158871141,158876608,158879683,158884563,158887020,158891264,158901738,158902375,158905988,158911549,158912984,158914232,158918739,158922376,158923570,158926186,158926401,158926991,158930454,158934128,158934417,158941924,158945580	158856750,158869908,158871562,158876691,158879989,158884619,158887075,158891333,158901816,158902595,158906091,158911679,158913096,158914321,158918869,158922549,158923733,158926300,158926463,158927043,158930515,158934228,158934549,158942148,158946192	0.941176
K562	chr19	55280199	55280251	55280218	-	High_confidence	39	49	115	4.940082	4.027396	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.904348
K562	chr9	136232096	136232131	136232096	-	RAMPAGE_only	3	4	12	0.515487	2.751629	chr9	136232041	136232247	DNA|TcMar-Tigger|MER6B	-	chr9	136211263	136224877	QSOX2|ENST00000455222.1	-	136211263,136215153,136216599,136218678,136219029,136224006,136224860	136211452,136215304,136216722,136218808,136219164,136224112,136224877	0.916667
K562	chr10	9877867	9877936	9877885	-	High_confidence	6	6	28	1.202802	4.307355	chr10	9877497	9877868	DNA|TcMar-Tigger|MER6A	-	chr10	9758782	9878060	AL358214.1|ENST00000647601.1	-	9758782,9790673,9877747	9758967,9790788,9878060	0.500000
K562	chr10	104254221	104254224	104254223	+	High_confidence	4	7	9	0.386615	2.641604	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254193	104267464	GSTO1|NM_001191003.1	+	104254193,104255162,104259575,104262978,104266083,104267251	104254499,104255271,104259798,104263077,104266190,104267464	1.000000
K562	chr1	194859257	194859303	194859302	-	High_confidence	7	8	27	1.159845	4.003856	chr1	194858882	194860246	LTR|ERV1|LTR12C	+	chr1	194673760	194859112	MSTRG.2385.2	-	194673760,194858846	194674064,194859112	0.851852
K562	chr1	40041473	40041487	40041473	+	High_confidence	6	6	11	0.472530	3.027169	chr1	40041503	40041638	SINE|MIR|MIRc	+	chr1	40040779	40066295	CAP1|ENST00000424977.1	+	40040779,40041428,40059336,40060066,40061734,40064226,40064473,40066214	40040801,40041493,40059458,40060170,40061812,40064370,40064559,40066295	0.909091
K562	chr12	76781587	76781607	76781592	+	RAMPAGE_only	6	6	16	0.687316	3.327820	chr12	76781376	76781761	LTR|ERVL-MaLR|MSTD	+	chr12	76797518	76822490	ZDHHC17|ENST00000549944.1	+	76797518,76805316,76809042,76809712,76813312,76815145,76815856,76822405	76797537,76805439,76809120,76809857,76813449,76815210,76816019,76822490	0.937500
K562	chr18	73264469	73264502	73264501	-	High_confidence	381	385	1003	43.086102	6.896041	chr18	73264307	73264608	SINE|Alu|AluY	+	chr18	73154057	73264498	LOC400655|NR_034133.1	-	73154057,73159540,73161823,73200652,73255812,73264239	73155935,73159664,73161973,73200789,73255918,73264498	0.881356
K562	chr2	182608490	182608522	182608521	-	High_confidence	10	10	41	1.761246	4.523986	chr2	182608314	182609753	LTR|ERV1|LTR12C	+	chr2	182140035	182608687	MSTRG.16937.1	-	182140035,182147035,182185891,182186467,182188978,182201438,182201687,182205939,182223863,182230005,182231014,182234431,182240109,182264300,182522275,182608292	182143038,182147152,182186079,182186588,182189060,182201559,182201789,182206065,182223964,182230146,182231131,182234498,182240292,182264414,182522386,182608687	0.756098
K562	chr12	116759917	116759949	116759927	+	High_confidence	308	314	825	35.439715	4.404119	chr12	116756444	116760863	LINE|L1|L1PB1	-	chr12	116759890	116853548	MSTRG.6827.9	+	116759890,116766813,116779194,116833791,116835959,116836180,116849313	116760621,116766914,116779348,116833941,116836025,116836282,116853548	0.990303
K562	chr4	141332512	141332513	141332512	-	High_confidence	25	27	28	1.202802	3.633974	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.964286
K562	chr6	13674980	13674985	13674984	-	High_confidence	19	20	44	1.890118	4.897081	chr6	13674973	13676011	LINE|L1|L1MCa	+	chr6	13621497	13675406	MSTRG.23782.1	-	13621497,13625652,13632369,13634430,13637807,13639562,13641198,13642478,13644544,13652658,13657108,13658779,13674846	13622492,13625764,13632521,13634552,13637955,13639753,13641307,13642591,13644729,13652681,13657276,13658832,13675406	0.909091
K562	chr2	103464911	103464945	103464937	-	High_confidence	29	29	86	3.694322	5.615768	chr2	103464918	103465330	LTR|ERVL-MaLR|MSTB1	+	chr2	103449784	103464943	MSTRG.16318.1	-	103449784,103450472,103464737	103450020,103450615,103464943	0.825581
K562	chr12	23721466	23721495	23721494	-	High_confidence	43	45	197	8.462574	5.254117	chr12	23721420	23721615	DNA|hAT-Charlie|Charlie10b	+	chr12	23533169	23721559	MSTRG.5846.4	-	23533169,23536452,23543210,23546315,23563257,23575660,23604386,23640811,23665443,23721433	23534522,23536669,23543384,23546424,23563403,23575838,23604533,23640897,23665567,23721559	0.878173
K562	chr9	32997349	32997350	32997349	-	High_confidence	23	23	23	0.988016	4.262692	chr9	32997347	32997748	LINE|L2|L2c	-	chr9	32972762	32997360	APTX|ENST00000479656.5	-	32972762,32974457,32984630,32985970,32987543,32988078,32989758,32997242	32973652,32974561,32984857,32986030,32987842,32988124,32989895,32997360	0.913043
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	64226142	64226180	64226158	-	High_confidence	116	122	770	32.356219	7.465605	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.984416
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	98982463	98982475	98982474	+	RAMPAGE_only	3	4	8	0.336169	2.521641	chr3	98982455	98982586	SINE|MIR|MIR3	-	chr3	98981057	98998841	MSTRG.26035.1	+	98981057,98982463,98997769	98981386,98982534,98998841	0.750000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	32403105	32403169	32403148	-	RAMPAGE_only	38	46	161	6.765391	5.687605	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.987578
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	246417412	246417413	246417412	-	High_confidence	63	63	70	2.941474	4.952893	chr1	246417275	246418033	LTR|ERV1|LTR8B	-	chr1	245749339	246417412	SMYD3|NM_022743.2	-	245749339,245764040,245858495,245863798,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246417295	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246417412	0.871429
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	1655384	1655411	1655410	-	RAMPAGE_only	12	16	26	1.092548	4.209867	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	MSTRG.197.10	-	1641771,1641905,1642385,1645125,1649498,1652468,1655368,1657374,1658913	1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1658972	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	54200547	54200588	54200557	+	High_confidence	4	4	20	0.840421	3.784184	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.550000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	128095840	128095862	128095861	+	High_confidence	3	4	7	0.294147	2.521641	chr11	128093965	128096590	LTR|ERVL|ERVL-B4-int	+	chr11	128096041	128183212	AP000904.1|ENST00000649115.1	+	128096041,128101241,128167171,128168182,128169212,128169593,128174634,128180459,128182800	128096099,128101384,128167255,128168371,128169346,128169830,128174797,128180623,128183212	0.714286
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	571736	571774	571773	-	High_confidence	3	3	15	0.630316	3.640224	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.800000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	41521746	41521763	41521762	-	High_confidence	3	3	13	0.546274	3.418296	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41513745	41521774	KRT15|ENST00000474031.5	-	41513745,41515884,41516103,41516807,41518329,41521684	41515692,41516010,41516265,41516964,41518461,41521774	0.769231
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	21551137	21551172	21551148	-	High_confidence	7	7	27	1.134569	4.356558	chr17	21551016	21551106	DNA|hAT-Charlie|Charlie16a	-	chr17	21528309	21551678	C17orf51|NM_001113434.4	-	21528309,21550995	21535538,21551678	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	15657883	15657884	15657883	+	RAMPAGE_only	16	16	16	0.672337	3.280639	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	41739782	41739808	41739801	-	RAMPAGE_only	7	7	24	1.008506	4.501629	chr17	41739652	41739945	LINE|L2|L2c	+	chr17	41722638	41734646	HAP1|NM_001079871.1	-	41722638,41725858,41727052,41728200,41731492,41731637,41731936,41732229,41732718,41734165	41725154,41725897,41727144,41728331,41731559,41731743,41732118,41732394,41732798,41734646	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	149509878	149509932	149509878	-	RAMPAGE_only	21	22	142	5.966991	4.812178	chr5	149509722	149509839	SINE|Alu|AluJb	-	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.964789
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	200411799	200411800	200411799	+	High_confidence	9	9	11	0.462232	2.846439	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411799	200475513	AC104461.1|ENST00000634596.1	+	200411799,200473908	200411962,200475513	0.545455
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	176194051	176194080	176194059	-	High_confidence	3	5	17	0.714358	3.452820	chr4	176193901	176194538	DNA|TcMar-Tigger|MER44C	+	chr4	176184659	176194877	SPATA4|ENST00000515234.1	-	176184659,176188118,176192626,176192957,176193452	176184892,176188235,176192847,176193076,176194877	0.941176
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	150991055	150991065	150991055	+	High_confidence	15	15	55	2.311158	4.446940	chr7	150990674	150991176	LTR|ERV1|LTR10A	-	chr7	150991055	151014599	NOS3|NM_000603.4	+	150991055,150993752,150995202,150996403,150996762,150998356,150998538,150998945,150999189,151000497,151001230,151001543,151001820,151002199,151006426,151006888,151007101,151008929,151009188,151009397,151010114,151010596,151010898,151012350,151013230,151013723,151014007	150991300,150993961,150995314,150996552,150996925,150998448,150998680,150999085,150999364,151000599,151001425,151001617,151001965,151002304,151006494,151007005,151007276,151009062,151009267,151009585,151010287,151010807,151010986,151012472,151013379,151013918,151014599	0.963636
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	43013392	43013393	43013392	-	High_confidence	14	14	17	0.714358	3.969816	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	155555187	155555216	155555215	-	RAMPAGE_only	17	18	56	2.353180	5.401018	chr3	155555213	155555573	LTR|ERVL-MaLR|MLT1J2	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	0.910714
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	79000125	79000126	79000125	-	RAMPAGE_only	10	11	11	0.462232	2.846439	chr17	79000000	79000091	SINE|Alu|AluJb	-	chr17	78991716	78998293	CANT1|ENST00000620915.4	-	78991716,78995017,78996991,78998147	78993920,78995221,78997774,78998293	0.909091
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	34369438	34369458	34369457	+	RAMPAGE_only	3	3	8	0.336169	2.807355	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	82175988	82175989	82175988	-	RAMPAGE_only	8	8	10	0.420211	2.725481	chr6	82175747	82176042	SINE|Alu|AluSp	+	chr6	82170235	82173578	IBTK|ENST00000508381.1	-	82170235,82172379	82171556,82173578	0.900000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	40746876	40746887	40746876	-	High_confidence	6	7	15	0.630316	3.589898	chr9	40746807	40747326	LTR|ERV1|LTR10A	-	chr9	40665678	40747048	MSTRG.37403.1	-	40665678,40746483	40666468,40747048	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	2757779	2757802	2757779	+	High_confidence	6	6	22	0.924463	3.936260	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.954545
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	112459015	112459016	112459015	+	RAMPAGE_only	29	29	30	1.260632	4.142295	chr1	112458861	112459174	DNA|hAT-Charlie|MER102b	-	chr1	112396180	112461164	CTTNBP2NL|ENST00000271277.10	+	112396180,112412193,112416156,112448941,112454448,112455930	112396272,112412317,112416264,112449172,112454556,112461164	0.966667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	210094492	210094504	210094492	+	RAMPAGE_only	3	3	9	0.378190	2.503258	chr1	210094489	210094534	DNA|hAT-Ac|OldhAT1	+	chr1	210021045	210162967	SYT14|ENST00000534859.2	+	210021045,210094321,210100011,210155720,210159399,210160728	210021254,210094593,210100461,210155910,210159477,210162967	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	31859857	31859858	31859857	+	RAMPAGE_only	21	22	22	0.924463	2.826879	chr14	31859824	31859996	SINE|MIR|MIR	-	chr14	31843743	31861218	NUBPL|ENST00000552888.1	+	31843743,31850118,31859117	31846591,31850201,31861218	0.954545
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	48868595	48868666	48868613	-	High_confidence	106	127	683	28.700386	7.322183	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.986823
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	141332616	141332617	141332616	-	High_confidence	58	58	60	2.521264	3.987231	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.966667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrX	53546437	53546447	53546437	-	RAMPAGE_only	2	2	8	0.336169	2.807355	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	6590246	6590293	6590246	+	High_confidence	10	10	54	2.269137	4.803023	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.981481
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	18258180	18258189	18258180	-	High_confidence	5	5	12	0.504253	3.095795	chr17	18258055	18258210	SINE|MIR|MIR1_Amn	-	chr17	18244814	18258556	FLII|NM_001256264.1	-	18244814,18245353,18245554,18245743,18245933,18246161,18246307,18246593,18246912,18247168,18247656,18247928,18248549,18248799,18249126,18249325,18250837,18251264,18251679,18251998,18252471,18253300,18253543,18254078,18254520,18254768,18255182,18256525,18256908,18258446	18245272,18245419,18245660,18245850,18246062,18246222,18246462,18246828,18247052,18247357,18247848,18248033,18248721,18248883,18249201,18249408,18251017,18251477,18251816,18252146,18252556,18253458,18253719,18254182,18254682,18254854,18255263,18256597,18257019,18258556	0.916667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	83208348	83208380	83208379	-	High_confidence	3	3	8	0.336169	3.000000	chr15	83208333	83208482	SINE|MIR|MIR3	+	chr15	83127752	83208018	HDGFL3|ENST00000299633.6	-	83127752,83151214,83157414,83157902,83163998,83207330	83139275,83151361,83157573,83158041,83164075,83208018	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	151087669	151087678	151087677	-	High_confidence	5	5	11	0.462232	2.921928	chr5	151087670	151087840	SINE|MIR|MIRc	+	chr5	151029942	151087660	TNIP1|NM_001252390.1	-	151029942,151032286,151033607,151035001,151035581,151036789,151039096,151042539,151042895,151045860,151049823,151052164,151056765,151060317,151062126,151063612,151064959,151087590	151030747,151032383,151033799,151035067,151035707,151036921,151039225,151042671,151042961,151045950,151049947,151052259,151056957,151060395,151062212,151063747,151065131,151087660	0.909091
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	41632127	41632141	41632132	-	High_confidence	2	3	8	0.336169	2.807355	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41521337	41632124	KC6|ENST00000599934.1	-	41521337,41525354,41564798,41631999	41521496,41525526,41564898,41632124	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	38146716	38146840	38146716	-	RAMPAGE_only	7	7	79	3.319664	5.648688	chr20	38146558	38146675	SINE|MIR|MIR3	-	chr20	38137949	38165282	TGM2|ENST00000468262.5	-	38137949,38139411,38141281,38142063,38146716,38147960,38150938,38155846,38161419,38165188	38138385,38139654,38141385,38142199,38146894,38148089,38151057,38156089,38161599,38165282	0.898734
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	77491290	77491310	77491309	-	High_confidence	3	3	8	0.336169	2.807355	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77453865	77491285	WDR41|ENST00000504895.5	-	77453865,77459061,77463094,77464760,77489456,77491192	77453928,77459124,77463226,77464809,77489572,77491285	0.750000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	140641459	140641460	140641459	-	High_confidence	6	6	6	0.252126	2.584963	chr7	140641382	140641679	LINE|L2|L2b	-	chr7	140601924	140641485	DENND2A|ENST00000491728.5	-	140601924,140605704,140641405	140602542,140605806,140641485	0.833333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrX	13303406	13303409	13303406	-	High_confidence	103	141	271	11.387708	5.881852	chrX	13303238	13303604	LTR|ERVL-MaLR|THE1B	-	chrX	13266047	13303392	LINC02154|ENST00000412485.1	-	13266047,13287428,13303319	13267335,13287564,13303392	0.867159
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	128104781	128104841	128104840	-	RAMPAGE_only	6	6	19	0.798400	4.058814	chr3	128104760	128104822	LINE|CR1|L3	-	chr3	128064781	128101619	RUVBL1|ENST00000472125.5	-	128064781,128097299,128098881,128100594,128101558	128065220,128097498,128098945,128100744,128101619	0.578947
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	3208649	3208686	3208675	+	High_confidence	5	6	17	0.714358	3.852169	chr20	3208670	3208727	DNA|hAT-Charlie|MER5A	-	chr20	3208867	3223870	ITPA|NM_001324237.1	+	3208867,3213168,3213318,3213984,3215280,3218516,3221840,3223365	3209033,3213226,3213383,3214058,3215312,3218632,3221917,3223870	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	760906	760925	760924	+	High_confidence	10	10	17	0.714358	3.499228	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	140700445	140700452	140700445	+	High_confidence	1159	1291	2438	102.447353	4.960685	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.986054
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	35472742	35472743	35472742	+	RAMPAGE_only	12	12	13	0.546274	3.584963	chr20	35472680	35472757	DNA|hAT-Ac|OldhAT1	-	chr20	35462264	35478063	CEP250|ENST00000425934.5	+	35462264,35463574,35465742,35466038,35466965,35467303,35469889,35472052,35472672,35473373,35473869,35475501,35476448,35477870	35462553,35463631,35465825,35466204,35467072,35467555,35469986,35472151,35472831,35473552,35474052,35475646,35476595,35478063	0.923077
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	114394412	114394413	114394412	-	High_confidence	9	9	10	0.420211	3.169925	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	0.900000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	21218746	21218751	21218750	-	RAMPAGE_only	4	7	12	0.504253	3.022055	chr1	21218585	21218890	SINE|Alu|AluSx1	-	chr1	21217246	21279690	ECE1|NM_001113347.1	-	21217246,21221746,21225249,21227158,21227930,21233557,21235849,21236745,21238133,21244988,21247220,21255946,21257524,21258692,21260270,21272698,21279190	21220131,21221842,21225440,21227226,21228041,21233661,21235927,21236844,21238244,21245103,21247363,21256138,21257590,21258839,21260392,21272911,21279690	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	135125808	135125825	135125808	+	RAMPAGE_only	18	19	39	1.638821	4.831075	chr2	135125295	135125875	DNA|TcMar-Tigger|MER44B	-	chr2	135124079	135130705	RAB3GAP1|ENST00000489858.1	+	135124079,135126180,135126582,135129994,135130551	135124246,135126249,135126656,135130087,135130705	0.717949
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	150887937	150887979	150887978	+	RAMPAGE_only	7	7	13	0.546274	3.180833	chr6	150888007	150888522	LINE|L1|L1ME3Cz	+	chr6	150867341	150936915	MSTRG.32813.9	+	150867341,150876089,150877633,150877772,150882761,150885633,150887844,150905649,150918576,150922204,150926121,150936803	150867582,150876174,150877684,150877826,150882886,150885734,150887981,150905761,150918668,150922302,150926295,150936915	0.769231
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	78977923	78977972	78977923	-	RAMPAGE_only	4	6	22	0.924463	4.095795	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78962394	ZMIZ1-AS1|ENST00000428862.5	-	78943327,78945911,78960504,78961253	78944747,78945989,78960716,78962394	0.681818
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	60887064	60887084	60887064	+	High_confidence	5	5	18	0.756379	4.058814	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	109483897	109483916	109483915	-	RAMPAGE_only	5	5	16	0.672337	3.452820	chr9	109483883	109483990	DNA|hAT-Charlie|MER5A1	+	chr9	109375699	109498306	PTPN3|ENST00000374541.3	-	109375699,109381651,109382301,109383422,109389232,109391137,109391470,109404447,109406461,109408320,109409998,109410228,109420423,109422717,109426949,109428620,109433072,109436882,109438113,109445239,109448810,109454495,109457172,109457291,109463296,109498218	109379633,109381787,109382447,109383551,109389379,109391199,109391561,109404608,109406618,109408377,109410076,109410415,109420600,109422852,109427122,109428684,109433161,109436970,109438234,109445292,109448855,109454574,109457215,109457399,109463451,109498306	0.937500
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	107284882	107284895	107284893	+	High_confidence	5	8	19	0.798400	3.725481	chr9	107284763	107284913	SINE|MIR|MIRb	+	chr9	107284768	107332194	RAD23B|NM_001244713.1	+	107284768,107300140,107302034,107306378,107311681,107318751,107321982,107323889,107324833,107329542	107284913,107300222,107302114,107306647,107311737,107318879,107322118,107324017,107325004,107332194	0.947368
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	65570509	65570536	65570519	+	High_confidence	25	33	108	4.538275	5.709266	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.638889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	49612691	49612694	49612691	+	RAMPAGE_only	42	43	71	2.983496	4.626196	chr18	49612650	49612716	DNA|hAT-Charlie|MER5A	+	chr18	49700041	49700600	MSTRG.17602.1	+	49700041	49700600	0.873239
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	47067498	47067518	47067498	-	High_confidence	251	268	1176	49.416771	5.967864	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.875850
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	53381123	53381132	53381131	+	High_confidence	5	5	10	0.420211	2.947703	chr12	53380937	53381251	SINE|Alu|AluSp	-	chr12	53381301	53382658	SP1|ENST00000548560.1	+	53381301,53382109	53381813,53382658	0.800000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	212792469	212792470	212792469	-	High_confidence	6	6	9	0.378190	2.947703	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.777778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	15785396	15785438	15785396	+	RAMPAGE_only	3	3	21	0.882442	3.784942	chr1	15785352	15785645	SINE|Alu|AluSz6	+	chr1	15764963	15786589	FBLIM1|NM_001024216.1	+	15764963,15770408,15774617,15777169,15784547	15765233,15770578,15774796,15777287,15786589	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	34998724	34998725	34998724	+	RAMPAGE_only	7	7	7	0.294147	2.807355	chr6	34998360	34998835	LTR|ERV1|LTR2B	+	chr6	34889313	35091413	MSTRG.31663.3	+	34889313,34967238,34970009,34972580,34981689,34982751,34983112,34983323,34985081,34989223,34994301,35017472,35054098,35060146,35078557,35079515,35079820,35080993,35082690,35083154,35083416,35084120,35085765,35086951,35088605	34889599,34967319,34970166,34972643,34981986,34982827,34983214,34983425,34985278,34989316,34994422,35018059,35054165,35060253,35078656,35079668,35079928,35081158,35082816,35083226,35083503,35084258,35085936,35087049,35091413	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	34860653	34860696	34860653	-	High_confidence	3	3	11	0.462232	3.095795	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.636364
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	16981575	16981589	16981575	-	High_confidence	7	7	19	0.798400	3.530493	chr1	16981567	16981905	LTR|ERV1|LTR64	+	chr1	16974501	16981586	MFAP2|NM_001135247.1	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16981513	16975023,16975342,16975730,16976545,16976794,16976923,16977195,16978314,16981586	0.736842
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	172854666	172854703	172854666	+	RAMPAGE_only	2	2	10	0.420211	3.121928	chr5	172854401	172854991	DNA|TcMar-Tigger|MER6A	+	chr5	172834274	172952685	ERGIC1|ENST00000393784.7	+	172834274,172888698,172897001,172909666,172914713,172924004,172926508,172932435,172935187,172950708	172834433,172888760,172897074,172909761,172914838,172924109,172926569,172932536,172935310,172952685	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr22	21001572	21001618	21001617	-	High_confidence	6	6	25	1.050527	3.834963	chr22	21001557	21001648	SINE|MIR|MIR	-	chr22	21000271	21001518	THAP7|ENST00000488975.1	-	21000271,21000646,21001255	21000432,21000729,21001518	0.600000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	8600636	8600661	8600660	+	High_confidence	10	10	29	1.218611	4.142295	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.896552
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	8600719	8600749	8600738	+	High_confidence	4	6	20	0.840421	3.541446	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600725	8788523	PLCB1|ENST00000626966.2	+	8600725,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8600781,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788523	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	24383294	24383300	24383294	-	High_confidence	21	21	42	1.764885	5.041011	chr6	24383044	24383353	SINE|Alu|AluSp	+	chr6	24171754	24383292	DCDC2|NM_001195610.1	-	24171754,24178329,24205001,24278048,24288851,24290931,24301714,24301967,24353568,24357457,24383180	24174834,24178632,24205102,24278211,24288906,24291078,24301846,24302044,24353623,24357847,24383292	0.833333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	150497912	150497947	150497912	+	High_confidence	4	4	16	0.672337	3.577820	chr5	150497958	150498068	DNA|hAT-Charlie|Charlie4z	+	chr5	150497926	150521323	NDST1|ENST00000518299.1	+	150497926,150520867	150498239,150521323	0.625000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	43025277	43025319	43025318	+	High_confidence	6	6	23	0.966484	4.277613	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.782609
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	206052828	206052851	206052850	+	High_confidence	4	4	10	0.420211	2.846439	chr1	206052518	206053000	LTR|ERV1|LTR2B	+	chr1	206052844	206062257	BX571818.1|ENST00000582596.5	+	206052844,206060400,206061344,206061661	206053265,206060449,206061397,206062257	0.600000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	33441345	33441383	33441368	+	High_confidence	3	3	14	0.588295	3.238901	chr5	33441307	33441471	SINE|MIR|MIR3	-	chr5	33441380	33448730	TARS|ENST00000506040.1	+	33441380,33445323,33448540	33441864,33445404,33448730	0.785714
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	81154211	81154222	81154221	-	High_confidence	85	88	199	8.362192	6.094559	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.969849
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	73078287	73078288	73078287	+	RAMPAGE_only	7	7	7	0.294147	2.521641	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.714286
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	17935094	17935095	17935094	+	High_confidence	7	7	7	0.294147	2.807355	chr19	17934905	17935211	SINE|Alu|AluJr	-	chr19	17935095	17943985	CCDC124|NM_138442.3	+	17935095,17936409,17942655,17943260,17943507	17935191,17936579,17942845,17943375,17943985	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	80084315	80084342	80084315	-	RAMPAGE_only	5	5	13	0.546274	3.418296	chr8	80084257	80084362	LTR|ERVL-MaLR|MLT1K	+	chr8	80034867	80080831	TPD52|NM_001025252.2	-	80034867,80042619,80051526,80053281,80064477,80080314	80038235,80042668,80051628,80053430,80064593,80080831	0.923077
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr13	24580612	24580623	24580612	+	High_confidence	4	6	12	0.504253	3.277613	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.833333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	58337035	58337054	58337035	-	RAMPAGE_only	2	2	9	0.378190	2.500000	chr12	58336916	58337273	LINE|L2|L2b	+	chr12	58328380	58330462	MSTRG.8570.1	-	58328380,58330219	58328520,58330462	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	58755976	58755977	58755976	-	RAMPAGE_only	17	18	18	0.756379	3.616875	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	0.944444
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	93504706	93504730	93504706	-	RAMPAGE_only	2	2	11	0.462232	2.921928	chr5	93504513	93504869	LTR|ERVL-MaLR|THE1A	-	chr5	93411017	93438737	NR2F1-AS1|ENST00000606188.1	-	93411017,93438702	93411509,93438737	0.818182
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	11774341	11774342	11774341	-	High_confidence	18	22	23	0.966484	3.936260	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	0.782609
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	14245647	14245648	14245647	+	RAMPAGE_only	11	11	13	0.546274	3.084963	chr16	14245645	14245696	SINE|tRNA|LFSINE_Vert	+	chr16	14079287	14266772	MRTFB|ENST00000318282.9	+	14079287,14140543,14210242,14212353,14213544,14217125,14218819,14234145,14240236,14245527,14246472,14248925,14251861,14252364,14258100,14260908	14079354,14140760,14210308,14212409,14213620,14217287,14218998,14234283,14240484,14245660,14247357,14249081,14252023,14252502,14258161,14266772	0.923077
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	155304815	155304824	155304816	+	RAMPAGE_only	4	7	13	0.546274	3.392747	chr1	155304792	155304940	SINE|MIR|MIRb	-	chr1	155308747	155320666	FDPS|NM_001242824.1	+	155308747,155310042,155312254,155317940,155318168,155318664,155318855,155319610,155319793,155320408	155308965,155310205,155312395,155318021,155318291,155318753,155318928,155319688,155319928,155320666	0.769231
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	70425218	70425259	70425218	+	RAMPAGE_only	2	2	7	0.294147	2.521641	chr10	70424911	70425430	LTR|ERVL-MaLR|MLT1F1	-	chr10	70404378	70428618	EIF4EBP2|ENST00000373218.4	+	70404378,70419913,70421715	70404546,70420099,70428618	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	29093260	29093284	29093260	-	RAMPAGE_only	40	43	104	4.370191	5.895129	chr7	29093108	29093406	SINE|Alu|AluSx1	+	chr7	29066041	29112921	CPVL|ENST00000448959.5	-	29066041,29071772,29072300,29086483,29092622,29095083,29096102,29112703	29066121,29071904,29072423,29086550,29092702,29095142,29096217,29112921	0.798077
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	17336685	17336727	17336685	+	High_confidence	11	12	32	1.344674	4.288910	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.781250
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	112506707	112506708	112506707	+	RAMPAGE_only	19	19	23	0.966484	4.186704	chr12	112506599	112506946	LTR|ERVL-MaLR|MLT1H	-	chr12	112418913	112509913	PTPN11|ENST00000351677.6	+	112418913,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486474,112488442,112489023,112502143,112504694,112505824	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504796,112509913	0.956522
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	43508342	43508343	43508342	+	RAMPAGE_only	10	10	10	0.420211	3.121928	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	235454155	235454177	235454156	-	RAMPAGE_only	3	6	9	0.378190	2.947703	chr1	235454005	235454137	SINE|Alu|FLAM_C	-	chr1	235447189	235504481	B3GALNT2|NM_152490.4	-	235447189,235453089,235454155,235455558,235458602,235465635,235470849,235480053,235484321,235489167,235494680,235504140	235450340,235453146,235454315,235455684,235458786,235465714,235470960,235480149,235484515,235489268,235494828,235504481	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	94234072	94234080	94234079	+	RAMPAGE_only	4	4	8	0.336169	2.750000	chr4	94234038	94234182	SINE|MIR|MIR3	-	chr4	94208083	94289899	SMARCAD1|ENST00000394961.6	+	94208083,94208345,94213034,94226118,94233953,94236951,94240905,94249653,94250751,94252615,94264706,94270727,94273616,94274737,94274889,94276338,94277021,94278421,94278615,94278922,94280591,94281471,94283120,94284959,94289472	94208242,94208584,94213152,94226296,94234122,94237018,94241006,94249755,94250833,94253007,94264906,94270818,94273716,94274797,94274965,94276474,94277159,94278517,94278733,94279050,94280780,94281590,94283303,94285069,94289899	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	2881285	2881286	2881285	-	High_confidence	12	12	12	0.504253	3.418296	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr13	30743872	30743889	30743872	+	RAMPAGE_only	6	6	26	1.092548	3.993270	chr13	30743467	30743894	LINE|L2|L2c	+	chr13	30746583	30764425	MSTRG.9704.6	+	30746583,30752051,30755943,30763943	30746744,30752122,30756025,30764425	0.846154
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	26832779	26832836	26832779	-	High_confidence	2	3	17	0.714358	3.375000	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.882353
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	17208557	17208564	17208563	+	RAMPAGE_only	3	3	6	0.252126	2.584963	chr11	17208523	17208605	SINE|MIR|MIRc	-	chr11	17260339	17349980	NUCB2|ENST00000646648.1	+	17260339,17269184,17276007,17282788,17295323,17296103,17301743,17309571,17310824,17311184,17311871,17312027,17315385,17330126,17330901,17337347,17349344	17260501,17269331,17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17337534,17349980	0.833333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	28556168	28556194	28556168	-	High_confidence	2	2	8	0.336169	2.521641	chr17	28556047	28556134	LINE|CR1|L3b	-	chr17	28553386	28556829	PIGS|ENST00000487231.5	-	28553386,28554850	28554495,28556829	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	11795578	11795579	11795578	+	High_confidence	456	456	496	20.842448	5.055620	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.957661
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	62259165	62259171	62259165	+	RAMPAGE_only	189	219	357	15.001520	6.423546	chr10	62258971	62259329	LTR|ERVL-MaLR|THE1B	+	chr10	62281675	62282075	MSTRG.4495.1	+	62281675	62282075	0.529412
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	238486024	238486050	238486035	-	High_confidence	6	8	24	1.008506	3.970176	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrX	44951147	44951148	44951147	+	High_confidence	194	205	208	8.740381	6.428799	chrX	44950752	44951268	LTR|ERV1|LTR10D	+	chrX	44951157	45063676	MSTRG.38857.8	+	44951157,44961283,44974665,45010960,45020609,45034930,45037654,45051708,45053828,45059005,45059246,45060021,45061323,45063421	44951195,44961392,44974715,45011019,45020730,45034985,45037689,45051802,45053955,45059104,45059466,45060156,45061419,45063676	0.769231
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	44959363	44959364	44959363	+	RAMPAGE_only	7	7	9	0.378190	2.725481	chr20	44959390	44959947	LINE|L2|L2b	+	chr20	44966473	45079959	STK4|ENST00000372806.7	+	44966473,44972077,44978442,44981828,44987131,44995089,44997168,45000391,45001166,45024972,45075017	44966603,44972158,44978571,44981943,44987296,44995257,44997306,45000520,45001353,45025130,45079959	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	27155477	27155491	27155490	-	High_confidence	63	73	131	5.504759	4.181451	chr1	27155432	27155584	SINE|MIR|MIR	+	chr1	27098808	27155130	SLC9A1|NM_003047.4	-	27098808,27101202,27101724,27102015,27102384,27102672,27103222,27105884,27107647,27109526,27113825,27153982	27100644,27101275,27101826,27102130,27102558,27102743,27103312,27106087,27107865,27109777,27114286,27155130	0.954198
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	127205926	127205989	127205926	-	High_confidence	109	135	259	10.883455	5.631444	chr12	127205571	127206140	LTR|ERVL|MLT2B3	-	chr12	127184124	127205971	MSTRG.9492.1	-	127184124,127205663	127184354,127205971	0.872587
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	35164203	35164204	35164203	+	High_confidence	5	5	7	0.294147	2.807355	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	27716425	27716455	27716454	+	RAMPAGE_only	3	3	12	0.504253	2.918296	chr12	27716483	27716564	LINE|L2|L2	+	chr12	27710846	27755537	MRPS35|ENST00000542791.1	+	27710846,27755180	27710955,27755537	0.583333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	168922	168924	168922	+	High_confidence	3	5	7	0.294147	2.521641	chr5	168859	169173	SINE|Alu|AluSc	-	chr5	169052	182589	PLEKHG4B|ENST00000504041.1	+	169052,171042,171213,172896,173917,179550,181513,182003	169592,171132,171444,173067,174098,179754,181675,182589	0.714286
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	209651232	209651238	209651235	-	High_confidence	4	4	9	0.378190	3.000000	chr1	209651125	209651277	SINE|MIR|MIR3	+	chr1	209614869	209651334	LAMB3|NM_001017402.1	-	209614869,209616470,209617409,209617906,209618451,209622535,209622981,209623504,209623839,209625647,209626866,209627382,209628034,209629736,209630614,209632582,209633069,209634446,209637907,209638533,209649963,209650916	209615407,209616624,209617586,209618048,209618659,209622680,209623179,209623725,209624000,209626026,209626978,209627579,209628190,209629925,209630735,209632776,209633133,209634638,209637981,209638648,209650118,209651334	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	65576931	65577241	65577240	+	RAMPAGE_only	30	30	169	7.101560	5.241866	chr15	65577153	65577426	SINE|Alu|AluJr	+	chr15	65530488	65578355	HACD3|NM_016395.2	+	65530488,65551675,65554886,65556738,65558679,65562773,65564214,65570090,65571547,65572234,65576302	65530718,65551718,65554960,65556903,65558731,65562884,65564342,65570203,65571654,65572366,65578355	0.982249
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	29114158	29114219	29114173	+	High_confidence	47	47	328	13.782909	5.799713	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29114172	29181758	MSTRG.20170.5	+	29114172,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29175600,29181758	0.942073
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	54583960	54583978	54583960	+	RAMPAGE_only	5	6	11	0.462232	3.095795	chr15	54583642	54584219	LTR|ERVL|MER73	+	chr15	54609341	54627409	UNC13C|ENST00000539562.6	+	54609341,54622326,54623794,54626827	54609444,54622419,54623954,54627409	0.818182
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	179699766	179699767	179699766	+	High_confidence	8	8	9	0.378190	2.750000	chr5	179699708	179699835	SINE|MIR|MIR3	-	chr5	179699025	179709949	CANX|ENST00000510810.5	+	179699025,179706257,179707131,179708238,179708977,179709872	179699102,179706331,179707190,179708380,179709059,179709949	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr22	36481307	36481346	36481334	-	High_confidence	7	7	26	1.092548	3.893661	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.769231
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	57274832	57274861	57274860	+	RAMPAGE_only	3	4	9	0.378190	2.947703	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.777778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	71417011	71417046	71417037	+	RAMPAGE_only	7	8	30	1.260632	4.506891	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.900000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	176162936	176162969	176162937	-	RAMPAGE_only	8	12	26	1.092548	4.392747	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.807692
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	179877288	179877298	179877288	-	High_confidence	1	2	7	0.294147	2.584963	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179865064	179877790	TOR1AIP2|ENST00000495650.1	-	179865064,179877692	179865854,179877790	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	63594814	63594838	63594824	+	RAMPAGE_only	6	9	23	0.966484	3.816403	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	0.913043
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	172833817	172833818	172833817	+	High_confidence	16	16	24	1.008506	4.229871	chr5	172833690	172833861	SINE|MIR|MIRb	-	chr5	172834219	172952685	ERGIC1|NM_001031711.2	+	172834219,172888698,172897001,172909666,172914713,172924004,172926508,172932435,172935187,172950708	172834433,172888760,172897074,172909761,172914838,172924109,172926569,172932536,172935310,172952685	0.958333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	32677390	32677409	32677408	+	High_confidence	4	4	8	0.336169	2.750000	chr15	32677294	32677614	LTR?|LTR?|MamRep605	+	chr15	32677559	32696626	SCG5|ENST00000498069.5	+	32677559,32679765,32684559,32691709,32696513	32677744,32679915,32684669,32691763,32696626	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	141002107	141002116	141002115	-	High_confidence	4	8	15	0.630316	3.521641	chr8	141002088	141002337	LINE|L2|L2	-	chr8	140879479	141002110	PTK2|ENST00000517453.5	-	140879479,140890542,140925660,141002013	140879637,140890769,140925749,141002110	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	209651135	209651167	209651135	-	High_confidence	36	39	78	3.277643	5.481287	chr1	209651125	209651277	SINE|MIR|MIR3	+	chr1	209614869	209651334	LAMB3|NM_001017402.1	-	209614869,209616470,209617409,209617906,209618451,209622535,209622981,209623504,209623839,209625647,209626866,209627382,209628034,209629736,209630614,209632582,209633069,209634446,209637907,209638533,209649963,209650916	209615407,209616624,209617586,209618048,209618659,209622680,209623179,209623725,209624000,209626026,209626978,209627579,209628190,209629925,209630735,209632776,209633133,209634638,209637981,209638648,209650118,209651334	0.974359
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	73144752	73144753	73144752	-	RAMPAGE_only	5	7	7	0.294147	2.807355	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr22	18149868	18149874	18149868	+	High_confidence	36	37	64	2.689348	4.667434	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	76345604	76345605	76345604	-	RAMPAGE_only	13	16	16	0.672337	3.750000	chr17	76345479	76345626	SINE|Alu|AluJb	+	chr17	76328716	76353452	PRPSAP1|ENST00000436498.6	-	76328716,76330042,76330550,76332262,76344670,76348528,76353060	76328862,76330098,76330666,76332435,76344737,76348581,76353452	0.625000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	14337249	14337293	14337249	-	High_confidence	15	15	57	2.395201	5.468769	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14277963	14337166	MSTRG.5861.2	-	14277963,14281601,14294470,14294759,14295767,14337000	14279424,14281720,14294579,14294862,14295855,14337166	0.929825
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	144106341	144106345	144106344	+	RAMPAGE_only	5	5	9	0.378190	2.500000	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144104511	144107611	MAF1|ENST00000534585.5	+	144104511,144105639,144105868,144106075,144106342,144106834,144107087	144104858,144105766,144105997,144106241,144106674,144106963,144107611	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	108142474	108142507	108142506	+	RAMPAGE_only	3	3	11	0.462232	3.121928	chr11	108142554	108142845	SINE|Alu|AluJo	+	chr11	108146120	108147588	ACAT1|ENST00000533597.1	+	108146120,108147269	108146359,108147588	0.818182
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	205512286	205512317	205512316	+	RAMPAGE_only	11	11	24	1.008506	4.262692	chr1	205512088	205512401	LINE|L2|L2	-	chr1	205504801	205527825	CDK18|ENST00000419301.1	+	205504801,205523146,205523482,205524231,205525138,205526064,205526366,205526774,205527793	205504878,205523297,205523715,205524357,205525195,205526179,205526461,205526837,205527825	0.583333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	14337098	14337172	14337156	-	High_confidence	9	9	68	2.857432	5.070385	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14277963	14337166	MSTRG.5861.2	-	14277963,14281601,14294470,14294759,14295767,14337000	14279424,14281720,14294579,14294862,14295855,14337166	0.985294
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	154975505	154975530	154975529	+	High_confidence	5	5	18	0.756379	3.499228	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.611111
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	75879161	75879162	75879161	+	RAMPAGE_only	21	23	23	0.966484	3.762267	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75868950	75899577	UBE2Q2|ENST00000567921.1	+	75868950,75873427,75883365,75896994,75899426	75869010,75873568,75883424,75897061,75899577	0.739130
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	157394501	157394502	157394501	+	RAMPAGE_only	62	63	90	3.781896	5.042746	chr5	157394544	157394671	DNA|hAT-Charlie|MER5A	+	chr5	157269341	157395598	CYFIP2|NM_014376.3	+	157269341,157285338,157287018,157294782,157296672,157300714,157302793,157304237,157307760,157309742,157311663,157314343,157314968,157319761,157320654,157323920,157325481,157326170,157327972,157330741,157333326,157339056,157341069,157359004,157360281,157361467,157382589,157383264,157389188,157390520,157392832	157269583,157285478,157287108,157294860,157296774,157300896,157302890,157304366,157307865,157309834,157311781,157314463,157315094,157319928,157320802,157324074,157325638,157326267,157328049,157330850,157333446,157339256,157341157,157359148,157360372,157361598,157382662,157383359,157389427,157390668,157395598	0.977778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	55267603	55267623	55267622	-	High_confidence	6	6	12	0.504253	3.277613	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.750000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	7566514	7566534	7566514	-	High_confidence	16	18	66	2.773390	4.987367	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.863636
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	128921479	128921584	128921479	+	High_confidence	6	7	43	1.806906	4.766625	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.976744
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	6737341	6737423	6737414	+	High_confidence	13	13	56	2.353180	5.235926	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.946429
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	128921399	128921413	128921399	+	High_confidence	74	76	138	5.798907	5.273781	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.978261
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	12249191	12249202	12249201	+	RAMPAGE_only	3	4	9	0.378190	2.947703	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	62603144	62603175	62603144	-	High_confidence	7	7	34	1.428716	4.241729	chr20	62602934	62603232	LINE|L1|L1MEf	-	chr20	62596731	62603115	BX640514.2|ENST00000617730.1	-	62596731,62602977	62597218,62603115	0.647059
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	111606276	111606286	111606276	-	High_confidence	2	2	6	0.252126	2.584963	chr6	111606274	111606582	SINE|Alu|AluY	+	chr6	111555377	111606274	TRAF3IP2|NM_147686.3	-	111555377,111562964,111566443,111567623,111572894,111575642,111580196,111591257,111605775	111559551,111563039,111566560,111567692,111572983,111575821,111580389,111592094,111606274	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	172958875	172958925	172958918	+	High_confidence	121	148	491	20.632342	5.626241	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.975560
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	62366974	62367006	62366978	-	High_confidence	4	4	21	0.882442	3.787144	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.904762
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr21	44962764	44962798	44962797	+	RAMPAGE_only	3	3	7	0.294147	2.521641	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44958245	44976973	FAM207A|ENST00000479127.5	+	44958245,44960099,44967033,44973196,44976679	44958424,44960168,44967181,44973265,44976973	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	201171625	201171645	201171633	-	High_confidence	3	3	11	0.462232	3.121928	chr1	201171602	201171730	SINE|MIR|MIRc	+	chr1	201134770	201171582	TMEM9|NM_001288564.1	-	201134770,201143819,201146739,201151760,201153857,201171489	201135815,201143951,201146848,201151852,201153959,201171582	0.909091
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrX	53220846	53220848	53220846	-	RAMPAGE_only	4	8	12	0.504253	3.022055	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	122745475	122745510	122745483	-	RAMPAGE_only	3	4	17	0.714358	2.609850	chr3	122745410	122746106	DNA|TcMar-Tigger|MER44C	+	chr3	122740002	122741776	HSPBAP1|ENST00000471534.1	-	122740002,122741002	122740875,122741776	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	74744200	74744236	74744225	+	High_confidence	4	5	15	0.630316	3.240224	chr7	74744109	74744261	DNA|hAT-Charlie|MER117	+	chr7	74744343	74749452	GTF2I|ENST00000438130.6	+	74744343,74744757,74745882,74746336,74748014,74749024,74749267	74744508,74744941,74745941,74746411,74748116,74749090,74749452	0.933333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	100907731	100907732	100907731	-	RAMPAGE_only	7	7	7	0.294147	2.521641	chr14	100907475	100907696	SINE|MIR|MIRb	-	chr14	100879752	100903722	RTL1|ENST00000649591.1	-	100879752,100893443,100903290,100903604	100884874,100893505,100903386,100903722	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	76234518	76234536	76234535	-	High_confidence	8	12	25	1.050527	3.970176	chr4	76234334	76234657	LTR|ERV1|MER61A	-	chr4	76158759	76234536	SCARB2|ENST00000638295.1	-	76158759,76163224,76166249,76168402,76169866,76174143,76175790,76176436,76179516,76180953,76195706,76234302	76161751,76163383,76166301,76168476,76169985,76174313,76175910,76176528,76179705,76181101,76195864,76234536	0.880000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	169695143	169695157	169695143	+	High_confidence	5	10	16	0.672337	3.506891	chr5	169695012	169695314	LTR|ERVL-MaLR|MLT1I	+	chr5	169695178	169702427	DOCK2|ENST00000523684.5	+	169695178,169695802,169698373,169699381,169700013,169702302	169695216,169695938,169698449,169699458,169700139,169702427	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	42809306	42809308	42809306	+	High_confidence	19	36	38	1.596800	4.756619	chr3	42809252	42809581	LTR|ERV1|MER39	-	chr3	42809491	42864876	ACKR2|ENST00000497921.2	+	42809491,42819630,42839093,42864465	42809532,42819711,42839279,42864876	0.526316
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	86482577	86482578	86482577	+	RAMPAGE_only	6	7	9	0.378190	2.725481	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	10450100	10450120	10450119	+	High_confidence	4	4	8	0.336169	2.500000	chr11	10449604	10450192	LINE|L2|L2	-	chr11	10450320	10507579	AMPD3|ENST00000444303.6	+	10450320,10461514,10482062,10484819,10487234,10493348,10494898,10495569,10496811,10500085,10501469,10502720,10504548,10505707	10450515,10461740,10482225,10485039,10487364,10493543,10495030,10495733,10496938,10500249,10501590,10502894,10504659,10507579	0.625000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	20676161	20676202	20676161	-	High_confidence	28	30	44	1.848927	5.083128	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.772727
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	68840556	68840734	68840594	+	RAMPAGE_only	11	12	83	3.487748	5.030884	chr12	68840533	68840806	SINE|Alu|AluSz	-	chr12	68809016	68845544	MDM2|NM_001278462.1	+	68809016,68809207,68813553,68835828,68836671,68839273	68809086,68809292,68813628,68835984,68836749,68845544	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr21	36980986	36981014	36980986	-	High_confidence	3	3	15	0.630316	3.506891	chr21	36980978	36981177	LINE|L2|L2b	+	chr21	36750887	36980964	HLCS|ENST00000612277.4	-	36750887,36756541,36759726,36765011,36767217,36896859,36930250,36936448,36938831,36946008,36962035,36980783	36754417,36756755,36759841,36765172,36767285,36897131,36930433,36937392,36938994,36946154,36962170,36980964	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	101308293	101308325	101308299	+	High_confidence	25	38	150	6.303160	6.236654	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.960000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	75347042	75347066	75347042	+	High_confidence	5	5	14	0.588295	3.521641	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.642857
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	74650230	74650239	74650230	+	High_confidence	2	2	6	0.252126	2.584963	chr7	74650210	74650770	DNA|TcMar-Tigger|Tigger7	+	chr7	74650250	74650797	MSTRG.33890.1	+	74650250	74650797	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	67571174	67571194	67571179	+	High_confidence	2	3	10	0.420211	3.169925	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.900000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	18530820	18530824	18530823	-	RAMPAGE_only	4	5	8	0.336169	2.807355	chr11	18530726	18531024	SINE|Alu|AluY	-	chr11	18529608	18588683	UEVLD|ENST00000396197.7	-	18529608,18534329,18536405,18544622,18546879,18558227,18564891,18566346,18570213,18575346,18578723,18588612	18532487,18534453,18536469,18544796,18547050,18558330,18565010,18566482,18570377,18575412,18578808,18588683	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	40046007	40046020	40046019	+	RAMPAGE_only	7	8	17	0.714358	3.572469	chr7	40046066	40046260	LINE|L1|L1PA17	+	chr7	40059214	40093168	CDK13|ENST00000478563.2	+	40059214,40062825,40063022,40078004,40078719,40088125,40092964	40059279,40062927,40063100,40078121,40078851,40088331,40093168	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	124355447	124355448	124355447	-	RAMPAGE_only	11	11	13	0.546274	3.584963	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124325419	124374876	MSTRG.9471.10	-	124325419,124326190,124327408,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412	124325583,124326370,124327633,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362294,124363799,124372610,124374876	0.923077
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	127205799	127205826	127205825	-	High_confidence	6	7	13	0.546274	3.392747	chr12	127205571	127206140	LTR|ERVL|MLT2B3	-	chr12	127184124	127205971	MSTRG.9492.1	-	127184124,127205663	127184354,127205971	0.769231
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	137693061	137693146	137693085	+	High_confidence	92	111	507	21.304679	7.567432	chr6	137691890	137693871	LTR|ERVL|ERVL-int	+	chr6	137693006	137710371	MSTRG.32647.1	+	137693006,137698676	137693227,137710371	0.690335
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	168555306	168555456	168555418	-	RAMPAGE_only	10	10	91	3.823917	4.855501	chr5	168555251	168555542	SINE|Alu|AluSx	-	chr5	168548494	168579600	PANK3|ENST00000239231.6	-	168548494,168559031,168561392,168563888,168566012,168568645,168579255	168557621,168559157,168561516,168564065,168566266,168568998,168579600	0.989011
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	166850177	166850188	166850177	+	RAMPAGE_only	3	3	9	0.378190	2.947703	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	121313945	121314003	121314002	+	RAMPAGE_only	4	4	21	0.882442	3.553763	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	21878993	21879005	21879004	-	RAMPAGE_only	2	2	7	0.294147	2.584963	chr1	21878794	21878955	SINE|MIR|MIR3	-	chr1	21822231	21937297	HSPG2|NM_005529.6	-	21822231,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174,21937154	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896310,21937297	0.714286
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	53601821	53601831	53601825	+	RAMPAGE_only	4	4	17	0.714358	3.690117	chr5	53601869	53602073	DNA|TcMar-Tigger|Tigger7	+	chr5	53560674	53683338	NDUFS4|ENST00000506765.1	+	53560674,53603451,53646232,53683117	53560760,53603530,53646405,53683338	0.882353
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	174409993	174410028	174410027	+	High_confidence	5	5	17	0.714358	3.734522	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410036	174428859	SCRN3|ENST00000548921.5	+	174410036,174422884,174424474,174427712	174410225,174423047,174424649,174428859	0.588235
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	130428509	130428553	130428523	-	High_confidence	7	7	35	1.470737	4.653496	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046258.1	-	130416749,130419070,130425090,130425913,130426165,130427703	130418298,130419245,130425158,130426038,130426263,130428546	0.971429
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	2726956	2726963	2726958	+	High_confidence	5	8	14	0.588295	3.546594	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.714286
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	110969835	110969836	110969835	-	High_confidence	81	81	96	4.034022	5.777402	chr3	110969731	110970304	LTR|ERV1|LTR10C	-	chr3	110891910	110969937	MSTRG.26127.2	-	110891910,110893137,110969501	110892603,110893830,110969937	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	123060137	123060256	123060137	-	High_confidence	74	98	805	33.826956	5.717125	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.726708
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	66257274	66257275	66257274	+	High_confidence	5	6	8	0.336169	2.807355	chr11	66257301	66257398	SINE|MIR|MIR	+	chr11	66257293	66267860	KLC2|NM_001134775.1	+	66257293,66258546,66261741,66262122,66262813,66263659,66263850,66264045,66264344,66265022,66265167,66265654,66265853,66266092,66266432,66266872	66257488,66258822,66261972,66262192,66263036,66263747,66263952,66264219,66264444,66265072,66265235,66265763,66266012,66266217,66266490,66267860	0.750000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	127655803	127655862	127655861	+	RAMPAGE_only	6	6	22	0.924463	3.975418	chr4	127650220	127656245	LINE|L1|L1PA2	-	chr4	127632965	127716479	INTU|ENST00000503952.5	+	127632965,127643520,127656635,127663380,127669035,127674123,127684408,127685441,127687740,127700009,127704227,127705590,127706486,127708570,127710912,127713935,127716324	127633180,127644056,127656721,127663584,127669154,127674213,127684486,127685569,127687867,127700063,127704290,127705812,127706969,127708668,127711102,127714093,127716479	0.909091
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	99272846	99272910	99272909	+	High_confidence	21	21	136	5.714865	6.022877	chr7	99272913	99272966	LINE|L2|L2b	+	chr7	99273300	99297972	MYH16|NR_002147.2	+	99273300,99277538,99279509,99280875,99283564,99283872,99284844,99285381,99287891,99289286,99291322,99292311,99294017,99296700,99297659,99297891	99273423,99277712,99279737,99280980,99283651,99284018,99284935,99285438,99288137,99289404,99291450,99292508,99294150,99296917,99297796,99297972	0.889706
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	125895227	125895228	125895227	-	RAMPAGE_only	6	8	8	0.336169	2.750000	chr11	125895047	125895200	SINE|Alu|AluSc8	-	chr11	125893484	125896330	PUS3|ENST00000530811.5	-	125893484,125895223,125895906	125894286,125895789,125896330	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	123270201	123270248	123270201	-	High_confidence	6	6	17	0.714358	3.169249	chr12	123270153	123270246	DNA|hAT-Ac|OldhAT1	+	chr12	123260969	123270234	CDK2AP1|NM_001270433.1	-	123260969,123265195,123267184,123270176	123261803,123265322,123267282,123270234	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr22	26512099	26512138	26512099	-	High_confidence	8	8	14	0.588295	3.085055	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	0.928571
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	110170695	110170776	110170775	+	RAMPAGE_only	7	7	38	1.596800	4.501493	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	44887690	44887718	44887698	+	RAMPAGE_only	5	7	19	0.798400	3.181366	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885739	44901833	YWHAB|ENST00000428262.1	+	44885739,44887544,44901530	44885886,44887742,44901833	0.789474
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr13	109272198	109272203	109272202	+	RAMPAGE_only	29	30	44	1.848927	4.788755	chr13	109271794	109272374	LTR|ERV1|LTR9	+	chr13	109269633	109273838	AL161431.1|ENST00000618966.1	+	109269633	109273838	0.795455
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	32703785	32703795	32703785	+	High_confidence	2	2	8	0.336169	2.521641	chr3	32703312	32703822	DNA|TcMar-Tigger|MER44B	-	chr3	32703790	32713349	CNOT10|ENST00000485136.5	+	32703790,32704810,32708669,32713226	32703962,32704972,32708820,32713349	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	37147690	37147695	37147694	-	High_confidence	3	6	8	0.336169	2.521641	chr2	37147318	37147662	LINE|L1|L1PA4	-	chr2	37107272	37147806	EIF2AK2|ENST00000405334.5	-	37107272,37107473,37109193,37114730,37119958,37122505,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687	37107395,37107527,37109295,37114859,37120139,37122664,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147806	0.750000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	87469947	87469950	87469949	+	High_confidence	39	74	83	3.487748	5.267171	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87469949	87521413	CYTOR|ENST00000437561.1	+	87469949,87470149,87521206	87470042,87470304,87521413	0.518072
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	62598026	62598057	62598052	-	RAMPAGE_only	3	4	15	0.630316	3.456565	chr11	62597909	62598004	DNA|hAT-Tip100|MER91C	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	760794	760821	760794	+	High_confidence	3	3	10	0.420211	3.121928	chr16	760734	760840	SINE|MIR|MIRc	-	chr16	760766	768865	MSLN|ENST00000566549.5	+	760766,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766667,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	24887184	24887185	24887184	-	RAMPAGE_only	8	8	11	0.462232	2.721928	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24841324	24878027	ADCY3|ENST00000433852.1	-	24841324,24841555,24842253,24872569,24877921	24841386,24841667,24842384,24872719,24878027	0.909091
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrX	107156150	107156167	107156150	-	RAMPAGE_only	2	2	9	0.378190	3.000000	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.555556
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	106060415	106060476	106060475	-	High_confidence	66	67	162	6.807412	6.801201	chr8	106060473	106060807	LTR|ERVL|LTR18A	+	chr8	105784845	106060461	MSTRG.36343.4	-	105784845,105787066,105798324,105927650,106060380	105785217,105797224,105798442,105927717,106060461	0.716049
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	45424375	45424385	45424384	-	High_confidence	8	12	32	1.344674	4.601410	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	150498207	150498216	150498207	+	High_confidence	3	3	8	0.336169	2.521641	chr5	150498149	150498389	SINE|MIR|MIR	+	chr5	150497777	150558211	NDST1|NM_001301063.1	+	150497777,150520867,150527803,150532944,150534866,150535699,150539227,150540081,150541569,150542847,150545311,150549677,150551752,150553212	150497979,150521767,150528298,150533032,150535021,150535885,150539356,150540264,150541666,150542971,150545486,150549787,150551855,150558211	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	5699348	5699349	5699348	-	High_confidence	183	202	212	8.908465	6.168595	chr3	5699239	5699755	LTR|ERV1|LTR10A	-	chr3	5691278	5699340	MSTRG.24907.1	-	5691278,5698989	5693813,5699340	0.943396
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	171517717	171517814	171517813	+	RAMPAGE_only	10	10	65	2.731369	5.391298	chr1	171517862	171517949	DNA|hAT-Charlie|Charlie4a	+	chr1	171512031	171593511	PRRC2C|ENST00000426496.6	+	171512031,171513000,171514535,171515733,171517590,171522176,171523220,171523434,171524820,171527790,171532342,171535427,171536028,171537262,171539970,171545478,171550085,171557239,171561017,171566232,171566591,171568246,171571319,171574926,171577433,171579353,171579827,171583955,171584418,171587002,171587647,171588378,171591586	171512200,171513172,171514645,171515859,171517814,171522259,171523354,171523522,171524965,171527844,171532961,171535597,171536278,171537473,171542229,171545687,171550240,171558143,171561103,171566421,171566843,171568339,171571421,171575128,171577637,171579466,171579964,171584187,171584526,171587221,171587751,171588505,171593511	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	99208174	99208179	99208178	-	High_confidence	6	7	13	0.546274	3.251629	chr7	99208098	99208244	SINE|Alu|AluSx3	-	chr7	99173573	99207506	KPNA7|ENST00000327442.6	-	99173573,99177919,99181882,99184928,99188299,99193018,99195069,99196083,99203105,99207400	99173794,99178066,99182065,99185162,99188563,99193101,99195338,99196166,99203240,99207506	0.846154
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	8681599	8681603	8681599	+	High_confidence	7	8	14	0.588295	3.235926	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	92025767	92025790	92025779	-	RAMPAGE_only	6	6	24	1.008506	4.001823	chr14	92025601	92025895	SINE|Alu|AluSc	+	chr14	91965990	92040059	TRIP11|NM_001321851.1	-	91965990,91972716,91974626,91975171,91976107,91988283,91993808,91995351,91999239,91999967,92003418,92007639,92010985,92011754,92014214,92015695,92017681,92021555,92025309,92033191,92039546	91969893,91972861,91974743,91975286,91976189,91988383,91993912,91995515,91999433,92000108,92006448,92007852,92011072,92011795,92014577,92015861,92017750,92021831,92025420,92033250,92040059	0.833333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	72296023	72296027	72296023	+	RAMPAGE_only	2	2	7	0.294147	2.521641	chr12	72296059	72296101	LINE|L2|L2c	+	chr12	72272748	72665642	TRHDE|NM_013381.2	+	72272748,72286680,72377994,72469757,72473066,72499497,72542290,72562164,72562852,72568567,72575254,72575486,72618890,72621107,72621643,72652321,72653015,72656926,72663051	72273557,72286954,72378121,72469912,72473180,72499635,72542356,72562230,72563040,72568656,72575388,72575542,72619038,72621205,72621751,72652489,72653156,72657008,72665642	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	210439388	210439391	210439388	+	High_confidence	2	3	7	0.294147	2.521641	chr1	210438946	210439615	LTR|ERVL|ERVL-B4-int	-	chr1	210439582	210676296	HHAT|ENST00000367009.2	+	210439582,210464504,210513152,210587897,210623525,210674287	210439753,210464655,210513188,210588099,210623670,210676296	0.714286
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	140594389	140594418	140594417	-	RAMPAGE_only	5	5	9	0.378190	2.750000	chr7	140594207	140594714	LINE|L2|L2b	+	chr7	140518459	140602512	DENND2A|ENST00000461883.5	-	140518459,140519631,140521854,140523306,140525750,140527317,140544617,140546798,140555635,140558142,140559707,140567085,140568762,140569644,140573807,140585588,140587652,140601402	140518738,140519718,140522100,140523424,140525792,140527437,140544766,140546939,140555713,140558212,140559817,140567273,140568813,140569738,140574008,140585710,140587780,140602512	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	62367059	62367116	62367071	-	High_confidence	10	13	26	1.092548	4.085055	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	46186136	46186224	46186140	-	RAMPAGE_only	10	10	69	2.899453	5.337175	chr12	46185953	46186190	DNA|TcMar-Tigger|Tigger16b	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.985507
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	33838228	33838257	33838228	+	RAMPAGE_only	8	8	30	1.260632	4.208966	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.800000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrX	10589962	10589963	10589962	-	High_confidence	209	216	224	9.412718	6.481881	chrX	10589852	10590340	LTR|ERV1|LTR2B	-	chrX	10445555	10589909	MID1|ENST00000380780.5	-	10445555,10454869,10459645,10469696,10474622,10482479,10495583,10523091,10566887,10589586	10449716,10455077,10459807,10469840,10474750,10482628,10495691,10523187,10567603,10589909	0.745536
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	73787471	73787494	73787493	+	High_confidence	6	6	13	0.546274	3.546594	chr11	73787272	73787558	SINE|Alu|AluSx1	+	chr11	73787315	73864611	MRPL48|ENST00000310614.11	+	73787315,73805026,73808312,73825707,73844806,73859906,73863171,73864295	73787992,73805079,73808350,73825796,73844976,73860009,73863261,73864611	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	21200738	21200805	21200804	+	High_confidence	7	7	38	1.596800	4.826875	chr6	21200835	21201081	LINE|L1|L1MC3	+	chr6	21200811	21231441	CDKAL1|ENST00000476517.1	+	21200811,21201109,21230847	21200892,21201274,21231441	0.973684
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	63251011	63251012	63251011	-	RAMPAGE_only	7	7	7	0.294147	2.521641	chr20	63250953	63251864	LTR|ERVK|LTR13	-	chr20	63240783	63253437	NKAIN4|ENST00000370313.5	-	63240783,63244023,63247577,63248814,63249934,63253217	63241506,63244084,63247775,63248895,63250072,63253437	0.571429
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	56642453	56642463	56642458	-	RAMPAGE_only	3	3	9	0.378190	2.500000	chr12	56642329	56642417	SINE|Alu|AluJb	-	chr12	56638174	56645279	ATP5F1B|ENST00000548474.2	-	56638174,56639105,56645170	56638423,56639196,56645279	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	154976031	154976071	154976031	+	High_confidence	22	25	63	2.647327	4.226880	chr1	154975847	154976087	LINE|L1|L1PREC2	+	chr1	154975538	154978916	CKS1B|ENST00000473344.1	+	154975538,154977986,154978724	154975608,154978114,154978916	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr13	38354243	38354263	38354262	+	RAMPAGE_only	6	6	13	0.546274	3.546594	chr13	38354306	38354393	LINE|L1|L1M5	+	chr13	38349880	38363619	UFM1|ENST00000239878.8	+	38349880,38349998,38354238,38358092,38359300,38360710	38349921,38350055,38354296,38358132,38359333,38363619	0.923077
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	32982549	32982616	32982549	+	High_confidence	24	50	112	4.706359	5.858188	chr10	32982518	32982768	SINE|Alu|AluSz6	-	chr10	32982540	33082102	ITGB1-DT|ENST00000414157.1	+	32982540,32985622,33081341	32982685,32985757,33082102	0.651786
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	28080226	28080283	28080282	+	High_confidence	136	159	286	12.018024	5.563689	chr6	28079856	28080354	LTR|ERV1|LTR10A	+	chr6	28080222	28089563	MSTRG.31380.1	+	28080222,28085480,28086171,28088562	28080970,28085891,28086310,28089563	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	65577282	65577343	65577302	+	RAMPAGE_only	9	9	43	1.806906	4.802915	chr15	65577153	65577426	SINE|Alu|AluJr	+	chr15	65530488	65578355	HACD3|NM_016395.2	+	65530488,65551675,65554886,65556738,65558679,65562773,65564214,65570090,65571547,65572234,65576302	65530718,65551718,65554960,65556903,65558731,65562884,65564342,65570203,65571654,65572366,65578355	0.976744
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	50756986	50757018	50757004	-	RAMPAGE_only	10	10	21	0.882442	4.121928	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.952381
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	133369997	133370029	133369997	-	RAMPAGE_only	3	3	13	0.546274	3.180833	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	101281871	101281914	101281871	-	RAMPAGE_only	3	3	12	0.504253	3.277613	chr2	101281489	101281823	SINE|Alu|AluJo	-	chr2	101276090	101308696	RNF149|ENST00000295317.3	-	101276090,101281858,101286080,101288972,101294013,101294930,101308128	101277281,101282057,101286177,101289055,101294082,101295181,101308696	0.833333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	2242922	2242923	2242922	+	High_confidence	7	7	7	0.294147	2.807355	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	57279864	57279865	57279864	+	High_confidence	16	16	21	0.882442	4.142664	chr19	57279571	57279886	LINE|L2|L2a	+	chr19	57280050	57292534	ZNF460|ENST00000537645.5	+	57280050,57284550,57290698	57280124,57284677,57292534	0.571429
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	114295334	114295345	114295336	+	High_confidence	4	7	14	0.588295	3.700440	chr11	114294850	114295386	LTR|ERV1|LTR35A	-	chr11	114295812	114312516	NNMT|NM_006169.2	+	114295812,114297950,114312044	114296710,114298158,114312516	0.571429
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrX	20026422	20026440	20026432	-	High_confidence	6	6	25	1.050527	4.163856	chrX	20026328	20026400	LINE|L1|L1MB3	-	chrX	20021347	20025943	MAP7D2|ENST00000466145.1	-	20021347,20024950,20025680	20021549,20025083,20025943	0.720000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	11024657	11024698	11024691	+	High_confidence	2	2	8	0.336169	2.750000	chr16	11024601	11024707	LINE|L2|L2b	+	chr16	11024817	11044222	CLEC16A|ENST00000487189.5	+	11024817,11039753,11042253,11044027	11024921,11039876,11042363,11044222	0.750000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	62600173	62600187	62600186	-	High_confidence	4	4	8	0.336169	2.750000	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	32927967	32927977	32927976	+	High_confidence	220	231	412	17.312678	6.618755	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927976	33044802	MSTRG.35539.1	+	32927976,32996200,33041634,33044366	32928093,32996316,33041771,33044802	0.905340
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	3195772	3195773	3195772	-	High_confidence	13	13	15	0.630316	3.521641	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.933333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	15006394	15006422	15006394	+	RAMPAGE_only	23	23	38	1.596800	4.368388	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.736842
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	39154565	39154614	39154613	-	High_confidence	9	9	26	1.092548	3.517894	chr3	39154504	39154649	LINE|L2|L2c	+	chr3	39141850	39154602	CSRNP1|NM_001320560.1	-	39141850,39144136,39144996,39146477,39154496	39144044,39144451,39145256,39146722,39154602	0.923077
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	13037399	13037430	13037411	+	RAMPAGE_only	11	14	59	2.479243	4.943851	chr19	13037335	13037620	LINE|CR1|L3b	+	chr19	13024938	13094770	NFIX|ENST00000587260.1	+	13024938,13073046,13073421,13073905,13075534,13078612,13081679,13090298,13094634	13025552,13073109,13073496,13074026,13075671,13078735,13081855,13090390,13094770	0.983051
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	179118692	179118719	179118718	-	RAMPAGE_only	2	2	7	0.294147	2.584963	chr1	179118593	179118709	LINE|RTE-BovB|MamRTE1	-	chr1	179107717	179143044	ABL2|ENST00000504405.5	-	179107717,179109207,179110281,179112308,179114877,179117331,179118586,179120189,179121594,179126376,179131310,179142932	179108898,179109441,179110455,179112398,179115030,179117516,179118764,179120274,179121867,179126672,179131481,179143044	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	32703650	32703697	32703696	+	High_confidence	5	5	21	0.882442	4.037401	chr3	32703312	32703822	DNA|TcMar-Tigger|MER44B	-	chr3	32703790	32713349	CNOT10|ENST00000485136.5	+	32703790,32704810,32708669,32713226	32703962,32704972,32708820,32713349	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	54759973	54759974	54759973	-	High_confidence	16	18	20	0.840421	4.121928	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	40457003	40457004	40457003	+	RAMPAGE_only	4	4	7	0.294147	2.521641	chr1	40456917	40457007	DNA|TcMar-Tigger|Tigger19b	-	chr1	40450664	40463718	ZFP69B|NM_023070.2	+	40450664,40454202,40456944,40457343,40462420	40451088,40454288,40457071,40457439,40463718	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	37058880	37058884	37058883	-	RAMPAGE_only	4	4	11	0.462232	2.521928	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.909091
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	3536480	3536514	3536496	-	High_confidence	6	9	27	1.134569	4.469670	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.592593
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	165460386	165460468	165460386	+	RAMPAGE_only	116	128	1071	45.004559	7.334275	chr3	165460159	165460711	LTR|ERVL|MLT2B4	+	chr3	165497609	165517254	MSTRG.26827.5	+	165497609,165499120,165511510,165513666	165498180,165499287,165511651,165517254	0.791783
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	93504673	93504674	93504673	-	RAMPAGE_only	97	98	101	4.244127	5.450789	chr5	93504513	93504869	LTR|ERVL-MaLR|THE1A	-	chr5	93411017	93438737	NR2F1-AS1|ENST00000606188.1	-	93411017,93438702	93411509,93438737	0.881188
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	62897380	62897431	62897430	+	High_confidence	10	10	34	1.428716	4.625000	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.735294
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	46087042	46087066	46087065	-	High_confidence	6	7	17	0.714358	3.500000	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.823529
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	87213717	87213776	87213731	+	High_confidence	30	36	212	8.908465	6.291999	chr6	87213283	87213856	LTR|ERV1|LTR10A	-	chr6	87213737	87264196	MSTRG.32187.9	+	87213737,87215902,87216298,87218595,87233324,87242850,87245502,87254649	87214069,87216057,87216377,87218731,87233527,87243611,87245644,87264196	0.948113
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	113948835	113948836	113948835	-	RAMPAGE_only	11	11	14	0.588295	3.521641	chr12	113948646	113948806	SINE|MIR|MIRb	-	chr12	113816741	113966306	RBM19|ENST00000545145.6	-	113816741,113823208,113844667,113858790,113914968,113918391,113920610,113924696,113927053,113937006,113939959,113942323,113945827,113946353,113947333,113948832,113950082,113952511,113955130,113957781,113959211,113959864,113960058,113962231,113966191	113818186,113823321,113844788,113858896,113915085,113918447,113920690,113924757,113927229,113937136,113940160,113942434,113945924,113946475,113947464,113949036,113950154,113952590,113955211,113958050,113959404,113959903,113960178,113962414,113966306	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	3822953	3822954	3822953	+	RAMPAGE_only	10	11	12	0.504253	3.584963	chr2	3822772	3823124	LTR|ERVL-MaLR|THE1B	+	chr2	3844183	3847411	DCDC2C|ENST00000451101.1	+	3844183,3847153	3844642,3847411	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	65887614	65887623	65887614	-	High_confidence	4	4	9	0.378190	3.000000	chr11	65887463	65887575	LINE|L2|L2	-	chr11	65884008	65888490	FIBP|ENST00000533037.5	-	65884008,65884391,65884569,65884934,65885077,65885529,65887599,65887933,65888333	65884043,65884489,65884656,65884998,65885186,65885663,65887726,65888132,65888490	0.777778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr13	24968471	24968484	24968483	-	High_confidence	7	8	14	0.588295	3.700440	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24933005	24968453	TPTE2P1|ENST00000649209.1	-	24933005,24937576,24940506,24941986,24942931,24951396,24951594,24961748,24967391,24968205	24934663,24937770,24940785,24942108,24943021,24951488,24951770,24961849,24967453,24968453	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	77011249	77011280	77011249	+	RAMPAGE_only	14	14	54	2.269137	5.218118	chr4	77011235	77011415	DNA|hAT-Charlie|MER117	+	chr4	77014870	77021639	SEPT11|ENST00000506047.1	+	77014870,77019164,77020501	77015017,77019261,77021639	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	27612576	27612613	27612576	+	High_confidence	28	28	46	1.932969	4.711422	chr14	27612284	27612881	LTR|ERVL|LTR66	+	chr14	27612587	27639636	LINC00645|ENST00000557359.5	+	27612587,27613420,27634243,27636419	27612677,27613496,27634344,27639636	0.934783
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	32221722	32221771	32221770	+	High_confidence	17	17	71	2.983496	5.429004	chr1	32221596	32221823	SINE|MIR|MIRb	-	chr1	32221927	32226295	EIF3I|ENST00000355082.9	+	32221927,32222357,32222537,32224033,32224409,32226170	32222032,32222444,32222630,32224121,32224475,32226295	0.661972
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	34401059	34401099	34401098	+	RAMPAGE_only	3	3	11	0.462232	2.846439	chr19	34401027	34401223	SINE|Alu|AluJo	-	chr19	34365126	34402413	GPI|NM_000175.3	+	34365126,34366344,34366782,34368582,34377502,34377734,34378933,34379517,34381465,34393247,34393727,34393913,34396300,34396580,34399206,34399555,34399718,34399900	34365388,34366435,34366851,34368702,34377586,34377881,34379005,34379562,34381519,34393308,34393771,34394066,34396430,34396657,34399335,34399631,34399785,34402413	0.909091
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	176241621	176241653	176241652	+	High_confidence	21	21	75	3.151580	5.878114	chr1	176241083	176241796	DNA|TcMar-Tigger|MER44D	-	chr1	176241601	176845591	MSTRG.2917.1	+	176241601,176265052,176348395,176555406,176594523,176670969,176690136,176692125,176695737,176699099,176702606,176706358,176709982,176711834,176739625,176739979,176765665,176769606,176770966,176789808,176791346,176793559,176800060,176840172,176842379	176241743,176265118,176348734,176557241,176595595,176671115,176690430,176692318,176695859,176699589,176702735,176706450,176710176,176711981,176739761,176740196,176765837,176769784,176771180,176789977,176791482,176793669,176800132,176840271,176845591	0.800000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	206053133	206053173	206053133	+	High_confidence	14	16	52	2.185095	5.343898	chr1	206053000	206053902	LTR|ERV1|Harlequin-int	+	chr1	206052844	206062257	BX571818.1|ENST00000582596.5	+	206052844,206060400,206061344,206061661	206053265,206060449,206061397,206062257	0.730769
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	73716609	73716631	73716609	-	RAMPAGE_only	2	2	8	0.336169	2.750000	chr14	73716392	73716709	SINE|Alu|AluSx	+	chr14	73715123	73727133	ELMSAN1|ENST00000476562.5	-	73715123,73721296,73722697,73725271,73726032,73726603,73726829	73719501,73721509,73722847,73725360,73726108,73726707,73727133	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	21447805	21447822	21447821	-	High_confidence	39	48	131	5.504759	6.306624	chr4	21447494	21448036	DNA|TcMar-Tigger|MER44B	-	chr4	20728615	21447811	MSTRG.27571.1	-	20728615,20732005,20732680,20734627,20749661,20758820,20850542,21447761	20730129,20732068,20732785,20734735,20749732,20758890,20850667,21447811	0.633588
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	38691256	38691311	38691292	-	RAMPAGE_only	3	4	11	0.462232	3.277613	chr12	38691194	38691444	SINE|MIR|MIRb	+	chr12	38653370	38679678	CPNE8|ENST00000546603.5	-	38653370,38670728,38675716,38677451,38679577	38654070,38670802,38675774,38677554,38679678	0.727273
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	46903266	46903444	46903356	-	RAMPAGE_only	13	13	59	2.479243	5.073330	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.983051
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	98324408	98324412	98324408	-	RAMPAGE_only	3	3	12	0.504253	2.918296	chr9	98324341	98324464	SINE|MIR|MIRb	+	chr9	98303329	98371571	GABBR2|ENST00000634457.1	-	98303329,98306120,98362714,98371463	98303423,98306345,98362837,98371571	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	11225866	11225928	11225885	-	High_confidence	18	18	76	3.193601	5.639182	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.657895
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	45441849	45441878	45441877	-	High_confidence	58	60	128	5.378696	5.615870	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45430651	45441808	AC025580.1|ENST00000559553.1	-	45430651,45433612,45441780	45430814,45434150,45441808	0.812500
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	113650898	113650932	113650926	+	High_confidence	5	6	23	0.966484	4.088779	chr9	113650949	113651170	SINE|MIR|MIR	+	chr9	113650955	113682855	AL157702.2|ENST00000428292.1	+	113650955,113652016,113681905	113651164,113652080,113682855	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	87041958	87042012	87041987	-	High_confidence	4	5	21	0.882442	3.787144	chr9	87041882	87047900	LINE|L1|L1PA3	+	chr9	87008450	87042126	LOC440173|NR_027471.1	-	87008450,87041870	87010210,87042126	0.761905
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	103181328	103181329	103181328	-	RAMPAGE_only	98	99	99	4.160085	5.665132	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.686869
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	44209297	44209319	44209318	+	RAMPAGE_only	5	5	10	0.420211	2.641604	chr2	44209358	44209398	SINE|Alu|Alu	+	chr2	44201945	44232721	PPM1B|ENST00000459690.5	+	44201945,44217966,44218479,44232315	44202045,44218078,44218537,44232721	0.600000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	34998862	34998863	34998862	+	RAMPAGE_only	6	8	9	0.378190	2.750000	chr6	34998835	34999233	LTR|ERV1|HERVE_a-int	+	chr6	34889313	35091413	MSTRG.31663.3	+	34889313,34967238,34970009,34972580,34981689,34982751,34983112,34983323,34985081,34989223,34994301,35017472,35054098,35060146,35078557,35079515,35079820,35080993,35082690,35083154,35083416,35084120,35085765,35086951,35088605	34889599,34967319,34970166,34972643,34981986,34982827,34983214,34983425,34985278,34989316,34994422,35018059,35054165,35060253,35078656,35079668,35079928,35081158,35082816,35083226,35083503,35084258,35085936,35087049,35091413	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	11770342	11770343	11770342	-	RAMPAGE_only	9	9	14	0.588295	3.039149	chr6	11770197	11770333	DNA|hAT-Charlie|MER5B	-	chr6	11713654	11779047	ADTRP|NM_001143948.1	-	11713654,11723348,11735567,11766273,11768248,11770030,11778606	11714512,11723500,11735683,11766375,11768383,11770084,11779047	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	58306086	58306141	58306086	+	High_confidence	3	3	18	0.756379	3.572469	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58315202	MSTRG.19812.29	+	58305376,58306087,58312165,58314747	58305445,58306216,58312403,58315202	0.944444
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	106060533	106060539	106060533	-	High_confidence	5	5	10	0.420211	3.169925	chr8	106060473	106060807	LTR|ERVL|LTR18A	+	chr8	105784845	106060461	MSTRG.36343.4	-	105784845,105787066,105798324,105927650,106060380	105785217,105797224,105798442,105927717,106060461	0.600000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	105332615	105332650	105332649	+	RAMPAGE_only	3	3	9	0.378190	2.750000	chr12	105332447	105332765	SINE|Alu|AluSq2	+	chr12	105330867	105370680	C12orf75|ENST00000549934.2	+	105330867,105348601,105365806,105366616,105367476,105370633	105330937,105348626,105365842,105366696,105367509,105370680	0.777778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	22246146	22246158	22246146	+	High_confidence	2	3	8	0.336169	2.750000	chr8	22246118	22246429	SINE|Alu|AluSq2	-	chr8	22245431	22250896	POLR3D|ENST00000518039.1	+	22245431,22247220,22247856,22248480,22250074,22250395	22245614,22247264,22248008,22248649,22250227,22250896	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr13	51382047	51382063	51382047	-	RAMPAGE_only	3	3	8	0.336169	3.000000	chr13	51381694	51382000	SINE|Alu|AluSq4	-	chr13	51365502	51384691	INTS6|ENST00000483441.5	-	51365502,51367804,51368938,51374207,51374653,51376047,51378238,51379461,51382028,51383328,51383588	51365845,51367898,51369310,51374439,51374796,51376174,51378454,51379572,51382123,51383461,51384691	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	104030726	104030727	104030726	+	High_confidence	53	53	66	2.773390	5.464615	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.893939
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	169812903	169812904	169812903	-	High_confidence	21	21	25	1.050527	3.767894	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.880000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	181954472	181954509	181954472	+	High_confidence	3	3	9	0.378190	2.500000	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	152412488	152412498	152412488	-	High_confidence	7	7	12	0.504253	3.277613	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.916667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	48621496	48621539	48621524	+	RAMPAGE_only	15	27	66	2.773390	5.413311	chr18	48621468	48621857	LINE|L2|L2a	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	0.621212
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	59651209	59651256	59651209	+	RAMPAGE_only	6	9	48	2.017011	4.604765	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.937500
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	121950279	121950292	121950291	+	RAMPAGE_only	13	13	22	0.924463	3.442862	chr12	121949929	121950482	LINE|L1|L1MB5	+	chr12	121952694	121959739	WDR66|ENST00000535257.1	+	121952694,121957073,121958271,121958942	121954334,121957268,121958522,121959739	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	9792267	9792291	9792267	-	High_confidence	2	2	10	0.420211	3.169925	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.700000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	43417305	43417317	43417316	-	RAMPAGE_only	5	5	16	0.672337	3.773557	chr3	43417045	43417666	LTR|ERV1|LTR9	+	chr3	43366347	43621965	ANO10|ENST00000350459.8	-	43366347,43432610,43549719,43555277,43561219,43565652,43574808,43580352,43598531,43600383,43605713,43621908	43366974,43432727,43549848,43555469,43561402,43565727,43574864,43580472,43598666,43600581,43605863,43621965	0.937500
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	10419716	10419717	10419716	-	High_confidence	139	141	176	7.395707	5.690028	chr20	10419482	10419944	DNA|TcMar-Tigger|MER44B	-	chr20	10405198	10419790	MSTRG.22858.3	-	10405198,10407615,10408627,10412529,10419670	10405687,10407726,10408803,10413931,10419790	0.727273
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	77011646	77011648	77011646	+	RAMPAGE_only	12	18	26	1.092548	3.815072	chr4	77011417	77011685	LINE|L2|L2c	-	chr4	77014870	77021639	SEPT11|ENST00000506047.1	+	77014870,77019164,77020501	77015017,77019261,77021639	0.846154
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	36807869	36807870	36807869	-	High_confidence	63	64	79	3.319664	5.606416	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.810127
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	27427231	27427248	27427247	+	High_confidence	3	4	6	0.252126	2.584963	chr16	27427068	27427258	LTR|ERVL-MaLR|MLT1K	-	chr16	27427243	27450485	IL21R|ENST00000395754.4	+	27427243,27430055,27434346,27437487,27442961,27444541,27445176,27446006,27448533	27427361,27430120,27434449,27437687,27443116,27444719,27445276,27446088,27450485	0.833333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	123390725	123390745	123390743	+	High_confidence	3	5	12	0.504253	2.913977	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.833333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	128921939	128921961	128921939	+	High_confidence	6	12	23	0.966484	4.088779	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128942034	MSTRG.38326.7	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368,128940598,128941515,128941667	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940497,128940685,128941571,128942034	0.869565
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	184537556	184537596	184537595	-	High_confidence	5	5	27	1.134569	4.209867	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.555556
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	75127641	75127654	75127651	-	High_confidence	8	10	36	1.512758	4.256149	chr14	75127469	75127761	SINE|Alu|AluSx1	+	chr14	75118886	75127344	NEK9|ENST00000553823.5	-	75118886,75120509,75121118,75124045,75127121	75118935,75120580,75121174,75124223,75127344	0.777778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	128378036	128378058	128378057	+	High_confidence	2	2	7	0.294147	2.521641	chr9	128378027	128378106	LINE|RTE-BovB|MamRTE1	+	chr9	128378066	128389869	URM1|ENST00000483206.1	+	128378066,128387815,128389260	128378106,128387897,128389869	0.571429
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	11864387	11864420	11864410	-	RAMPAGE_only	4	4	13	0.546274	3.251629	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.769231
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	1655436	1655474	1655436	-	RAMPAGE_only	3	4	12	0.504253	3.251629	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	MSTRG.197.10	-	1641771,1641905,1642385,1645125,1649498,1652468,1655368,1657374,1658913	1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1658972	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	3831048	3831081	3831048	-	High_confidence	2	2	12	0.504253	3.459432	chr1	3830948	3831012	LINE|L2|L2a	-	chr1	3829691	3831224	CEP104|ENST00000495701.1	-	3829691,3831045	3829997,3831224	0.583333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	135965822	135965844	135965822	+	High_confidence	2	2	9	0.378190	2.947703	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	206052890	206052907	206052890	+	High_confidence	38	38	60	2.521264	4.344153	chr1	206052518	206053000	LTR|ERV1|LTR2B	+	chr1	206052844	206062257	BX571818.1|ENST00000582596.5	+	206052844,206060400,206061344,206061661	206053265,206060449,206061397,206062257	0.533333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	62376620	62376642	62376632	+	High_confidence	3	3	11	0.462232	3.095795	chr9	62376600	62376639	SINE|MIR|MIRb	+	chr9	62376516	62434385	FGF7P6|ENST00000452826.2	+	62376516,62432875	62376813,62434385	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	94467986	94468038	94467986	-	RAMPAGE_only	73	79	230	9.664845	6.538213	chr8	94467637	94468397	LTR|ERV1|LTR39	+	chr8	94431159	94475062	RAD54B|ENST00000297592.5	-	94431159,94458267,94467404,94475000	94432656,94458436,94467555,94475062	0.626087
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrY	12686579	12686580	12686579	+	RAMPAGE_only	6	6	8	0.336169	2.500000	chrY	12685409	12686624	LTR|ERV1|MER4-int	+	chrY	12701230	12860839	USP9Y|ENST00000338981.7	+	12701230,12708633,12709387,12720588,12722107,12725112,12726574,12735611,12735997,12736410,12738156,12739524,12757191,12758505,12760483,12771067,12773582,12775470,12776648,12778018,12778605,12779525,12786202,12786521,12790406,12791498,12793031,12810178,12810671,12811634,12812829,12816123,12818419,12833687,12837910,12839863,12841009,12842239,12843063,12846332,12846932,12847238,12856339,12856632,12857565,12859278	12702055,12708693,12709543,12720737,12722187,12725225,12726793,12735727,12736249,12736549,12738309,12739629,12757398,12758642,12760617,12771155,12773925,12775566,12776860,12778259,12778755,12779646,12786333,12786800,12790532,12791624,12793201,12810287,12810818,12811781,12813052,12816344,12818610,12833861,12838052,12840614,12841133,12842465,12843193,12846518,12847153,12847327,12856496,12856845,12857661,12860839	0.750000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr22	39320334	39320370	39320334	-	High_confidence	4	4	20	0.840421	3.884184	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.950000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	119314501	119314529	119314501	-	RAMPAGE_only	3	3	8	0.336169	2.807355	chr11	119314166	119314455	SINE|Alu|AluJr	-	chr11	119308528	119317116	MCAM|ENST00000264036.5	-	119308528,119310348,119310755,119311089,119311279,119311529,119311807,119312051,119312265,119312526,119312769,119314488,119314678,119314832,119315138,119317034	119309915,119310466,119310903,119311185,119311421,119311651,119311949,119312170,119312428,119312648,119312949,119314576,119314749,119315040,119315263,119317116	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr13	30429288	30429289	30429288	-	RAMPAGE_only	9	12	12	0.504253	3.251629	chr13	30428989	30429302	SINE|Alu|AluSq2	+	chr13	30202629	30307487	KATNAL1|NM_032116.4	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30307330	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307487	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	50226714	50226728	50226714	+	High_confidence	11	11	23	0.966484	3.969002	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	0.956522
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	77011426	77011445	77011426	+	RAMPAGE_only	4	4	8	0.336169	2.750000	chr4	77011417	77011685	LINE|L2|L2c	-	chr4	77014870	77021639	SEPT11|ENST00000506047.1	+	77014870,77019164,77020501	77015017,77019261,77021639	0.625000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	177445145	177445149	177445145	+	High_confidence	4	4	11	0.462232	3.121928	chr4	177444910	177445732	LTR|ERV1|LTR1A2	+	chr4	177444978	177677126	AC078881.1|ENST00000507023.1	+	177444978,177451474,177593471,177596460,177623658,177675836	177445443,177451590,177593546,177596531,177623802,177677126	0.545455
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	100268208	100268281	100268280	+	RAMPAGE_only	85	87	161	6.765391	4.586408	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.981366
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	8714136	8714137	8714136	+	RAMPAGE_only	11	11	11	0.462232	2.663533	chr18	8714168	8714357	SINE|MIR|MIRb	+	chr18	8717370	8832777	MTCL1|NM_015210.3	+	8717370,8717903,8718423,8720337,8777832,8783529,8785935,8792997,8796231,8798096,8806892,8812978,8818962,8821466,8824698,8828907,8831606	8717426,8717962,8718648,8720496,8777892,8784843,8786091,8793120,8796462,8798291,8807060,8813233,8819259,8821498,8826232,8828964,8832777	0.909091
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	134711498	134711504	134711498	+	RAMPAGE_only	5	10	20	0.840421	4.037401	chr7	134711275	134711628	LTR|ERVL|MLT2D	+	chr7	134744251	134968402	CALD1|ENST00000417172.5	+	134744251,134843883,134867692,134928753,134932987,134941091,134947507,134950373,134958068,134958208,134959973,134960532,134965305,134968339	134744363,134843971,134867804,134928900,134933390,134941237,134947769,134950514,134958112,134958290,134960111,134960628,134965386,134968402	0.900000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	127451060	127451108	127451107	-	High_confidence	15	17	44	1.848927	4.862507	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.977273
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	57793995	57794024	57794012	+	RAMPAGE_only	3	4	9	0.378190	3.000000	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	39810023	39810099	39810033	-	High_confidence	64	64	180	7.563791	5.877129	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.655556
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	142474407	142474423	142474407	-	High_confidence	72	77	192	8.068044	6.435710	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.791667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	37298760	37298761	37298760	+	RAMPAGE_only	18	18	18	0.756379	3.794653	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	158325456	158325502	158325470	-	RAMPAGE_only	9	12	52	2.185095	4.951741	chr2	158324837	158326485	LINE|L2|L2a	+	chr2	158171543	158380960	CCDC148|ENST00000409187.5	-	158171543,158176520,158178878,158220594,158250771,158309432,158313755,158338725,158338989,158340241,158340597,158345214,158358448,158366013,158380820	158172259,158176661,158178996,158220713,158250912,158309639,158313894,158338907,158339085,158340393,158340680,158345318,158358570,158366076,158380960	0.903846
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	53936094	53936121	53936105	-	RAMPAGE_only	3	3	13	0.546274	3.022055	chr2	53935897	53936066	SINE|Alu|AluSx1	-	chr2	53864066	53970840	PSME4|ENST00000404125.5	-	53864066,53866084,53866746,53869375,53874338,53875626,53885689,53887258,53887857,53888720,53890103,53892807,53893673,53895006,53895582,53896803,53897869,53898300,53899880,53901349,53904024,53906597,53906805,53908319,53908509,53908783,53910074,53919150,53920192,53920888,53922516,53923048,53923320,53925538,53925958,53927393,53928116,53931834,53932667,53934604,53936086,53936763,53937390,53939955,53948420,53949142,53970542	53865573,53866223,53866880,53869538,53874494,53875755,53885775,53887467,53887989,53888812,53890208,53892960,53893799,53895076,53895736,53896885,53897999,53898354,53900017,53901559,53904156,53906693,53906868,53908418,53908565,53908840,53910130,53919246,53920350,53921104,53922584,53923118,53923419,53925689,53926023,53927483,53928303,53932100,53932760,53934727,53936161,53936827,53937540,53940000,53948537,53949283,53970840	0.923077
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	34918370	34918378	34918370	+	RAMPAGE_only	4	4	8	0.336169	2.521641	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	0.750000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	227534913	227534917	227534913	+	RAMPAGE_only	6	6	14	0.588295	3.238901	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.928571
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	139344537	139344548	139344547	+	High_confidence	164	164	338	14.203119	5.816579	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.961538
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	176241725	176241726	176241725	+	High_confidence	5	5	7	0.294147	2.521641	chr1	176241083	176241796	DNA|TcMar-Tigger|MER44D	-	chr1	176241601	176845591	MSTRG.2917.1	+	176241601,176265052,176348395,176555406,176594523,176670969,176690136,176692125,176695737,176699099,176702606,176706358,176709982,176711834,176739625,176739979,176765665,176769606,176770966,176789808,176791346,176793559,176800060,176840172,176842379	176241743,176265118,176348734,176557241,176595595,176671115,176690430,176692318,176695859,176699589,176702735,176706450,176710176,176711981,176739761,176740196,176765837,176769784,176771180,176789977,176791482,176793669,176800132,176840271,176845591	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	10363964	10363965	10363964	+	High_confidence	16	16	21	0.882442	3.721612	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.761905
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	58424075	58424096	58424095	-	RAMPAGE_only	4	4	10	0.420211	2.947703	chr14	58423952	58424081	LINE|CR1|L3	-	chr14	58408663	58427114	TIMM9|ENST00000556007.6	-	58408663,58410842,58411906,58424007,58427053	58409099,58410938,58411971,58424095,58427114	0.900000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	113650987	113650992	113650987	+	High_confidence	5	6	16	0.672337	3.139572	chr9	113650949	113651170	SINE|MIR|MIR	+	chr9	113650955	113682855	AL157702.2|ENST00000428292.1	+	113650955,113652016,113681905	113651164,113652080,113682855	0.937500
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	77088142	77088175	77088174	+	High_confidence	3	3	9	0.378190	2.503258	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.555556
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	55892970	55892981	55892972	+	High_confidence	2	4	8	0.336169	3.000000	chr18	55887412	55893439	LINE|L1|L1PA3	-	chr18	55893037	56023462	AC009271.1|ENST00000589440.1	+	55893037,56017727,56023401	55893442,56017779,56023462	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	98890308	98890322	98890311	+	High_confidence	3	3	16	0.672337	3.773557	chr15	98890160	98890677	LTR|ERV1|MER41A	+	chr15	98890340	98911398	IGF1R|ENST00000558898.1	+	98890340,98891324,98896756,98899476,98908684,98911314	98890468,98891637,98896905,98899621,98908899,98911398	0.687500
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	12961665	12961666	12961665	-	RAMPAGE_only	42	44	50	2.101053	4.581468	chr11	12960949	12961643	LINE|L1|L1ME1	-	chr11	12949169	12989532	MSTRG.5846.2	-	12949169,12965107,12986039,12988401,12989455	12962763,12965214,12986144,12988466,12989532	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	26644554	26644572	26644560	-	RAMPAGE_only	7	7	23	0.966484	3.879664	chr12	26644435	26644798	LTR|ERVL-MaLR|THE1B	-	chr12	26335336	26833198	ITPR2|NM_002223.3	-	26335336,26340166,26387433,26398875,26400127,26411319,26415302,26419048,26427912,26436220,26439126,26443542,26475295,26476911,26481130,26483697,26486103,26487067,26494152,26495151,26550246,26556232,26561761,26578712,26580026,26595464,26596882,26599144,26599986,26602369,26602616,26621122,26622239,26624298,26628032,26631865,26653975,26655707,26656296,26657706,26658010,26659112,26663684,26665909,26681873,26682573,26686480,26695605,26711172,26715298,26715751,26716143,26722396,26724655,26725649,26790156,26832689	26339483,26340328,26387594,26399041,26400258,26411412,26415498,26419213,26428088,26436346,26439319,26443650,26475418,26477007,26481241,26483898,26486360,26487251,26494340,26495260,26550355,26556375,26561952,26578833,26580155,26595590,26597134,26599345,26600109,26602495,26602706,26621296,26622405,26624356,26628162,26632059,26654126,26655852,26656548,26657892,26658130,26659285,26663846,26666051,26682034,26682673,26686632,26695650,26711268,26715445,26715835,26716242,26722555,26724742,26725765,26790227,26833198	0.913043
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	72992967	72992971	72992967	-	RAMPAGE_only	30	37	50	2.101053	4.987059	chr17	72992805	72993163	LTR|ERVL-MaLR|THE1B	-	chr17	72645949	73092688	SLC39A11|ENST00000542342.6	-	72645949,72648802,72649169,72736649,72849633,72947730,73031555,73084807,73088656,73092610	72647662,72648961,72649268,72736719,72849804,72947875,73031714,73084846,73088775,73092688	0.660000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	31494712	31494743	31494712	+	High_confidence	2	2	10	0.420211	3.121928	chr6	31494550	31494850	SINE|Alu|AluSp	+	chr6	31494880	31511124	MICB|NM_001289160.1	+	31494880,31505616,31506142,31507021,31507399,31509781	31494995,31505871,31506430,31507300,31507531,31511124	0.900000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	75324596	75324607	75324596	-	High_confidence	2	3	7	0.294147	2.807355	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223702	75324741	CASC9|ENST00000522183.1	-	75223702,75324564	75224358,75324741	0.571429
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	54524986	54525005	54524986	+	RAMPAGE_only	2	2	10	0.420211	2.921928	chr2	54524449	54525125	LINE|L2|L2a	+	chr2	54558393	54662308	SPTBN1|NM_178313.2	+	54558393,54599091,54612160,54616206,54617607,54618077,54621399,54622299,54623478,54624803,54625931,54628096,54628932,54629891,54630854,54632565,54637712,54642982,54644322,54645228,54645927,54646193,54647130,54648985,54649614,54653608,54655069,54655913,54657849,54659153,54659935	54558887,54599243,54612334,54616298,54617688,54618193,54621512,54622487,54623596,54624962,54626234,54628250,54629803,54630029,54631611,54632768,54637803,54643129,54644586,54645453,54646017,54646475,54647261,54649190,54649989,54653853,54655208,54655998,54658046,54659266,54662308	0.600000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	4127232	4127254	4127253	+	RAMPAGE_only	3	3	7	0.294147	2.807355	chr11	4127295	4127736	LTR|ERVL-MaLR|MLT1D	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	144160990	144160992	144160991	+	High_confidence	7	9	13	0.546274	3.418296	chr8	144160811	144161348	LTR|ERVL-MaLR|MLT1E2	-	chr8	144161024	144261927	MROH1|ENST00000528919.5	+	144161024,144163770,144168294,144179454,144180177,144180424,144190783,144191714,144192308,144199121,144200427,144220599,144223107,144238755,144239034,144239322,144239613,144240100,144240569,144240991,144241394,144242368,144242601,144243493,144243862,144244221,144244443,144245155,144247300,144247566,144248876,144250211,144254812,144255508,144258776,144259239,144259910,144260185,144260676,144260906,144261113,144261283,144261654	144161089,144163848,144168440,144179586,144180340,144180523,144190935,144191855,144192401,144199200,144200541,144220673,144223230,144238863,144239179,144239363,144239755,144240153,144240677,144241111,144241517,144242515,144242628,144243616,144243942,144244336,144244539,144245260,144247436,144247679,144249029,144250366,144254978,144255705,144258914,144259354,144260057,144260374,144260832,144261041,144261216,144261349,144261927	0.692308
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	45823822	45823858	45823822	-	High_confidence	2	2	6	0.252126	2.584963	chr19	45823777	45823871	LINE|RTE-BovB|MamRTE1	-	chr19	45816482	45824012	SYMPK|ENST00000598329.2	-	45816482,45816797,45817958,45821383,45822755,45823371,45823766	45816577,45816974,45818146,45821485,45822846,45823472,45824012	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	222064772	222064773	222064772	-	High_confidence	155	169	179	7.521770	6.024172	chr1	222064600	222064953	LTR|ERVL-MaLR|THE1B	-	chr1	222041704	222064763	LINC01705|ENST00000438158.1	-	222041704,222058413,222064684	222041922,222058678,222064763	0.659218
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	9307255	9307287	9307255	+	RAMPAGE_only	7	7	26	1.092548	4.251629	chr2	9307128	9307302	DNA|hAT-Charlie|MER5A	-	chr2	9323120	9358838	ASAP2|ENST00000641030.1	+	9323120,9327825,9334737,9335092,9336035,9344531,9344730,9350807,9356046,9356178,9358755	9323250,9327911,9334813,9335179,9336044,9344635,9344800,9350895,9356095,9356345,9358838	0.692308
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	87042075	87042121	87042110	-	High_confidence	18	18	83	3.487748	5.517783	chr9	87041882	87047900	LINE|L1|L1PA3	+	chr9	87008450	87042126	LOC440173|NR_027471.1	-	87008450,87041870	87010210,87042126	0.807229
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	152717584	152717585	152717584	+	High_confidence	514	531	628	26.389228	6.164510	chr6	152717403	152717757	LTR|ERVL-MaLR|THE1B	+	chr6	152717595	152724582	MSTRG.32827.4	+	152717595,152721741	152717673,152724582	0.957006
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	32816761	32816767	32816766	+	High_confidence	8	10	16	0.672337	3.906891	chr1	32816717	32816919	LINE|L2|L2c	+	chr1	32816766	32826489	S100PBP|ENST00000530710.5	+	32816766,32825312,32826097	32816982,32825429,32826489	0.687500
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	1925140	1925193	1925140	+	RAMPAGE_only	3	3	19	0.798400	3.197160	chr19	1925086	1925397	SINE|Alu|AluSx1	-	chr19	1922112	1926005	SCAMP4|ENST00000472442.2	+	1922112,1924107	1923187,1926005	0.894737
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	97580621	97580652	97580634	-	High_confidence	34	34	98	4.118064	5.499565	chr11	97580536	97582272	LINE|L1|L1ME3	+	chr11	97335511	97580682	MSTRG.7075.1	-	97335511,97392448,97399592,97580592	97335627,97392527,97399728,97580682	0.755102
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	56904375	56904400	56904375	-	High_confidence	3	3	15	0.630316	3.640224	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56895769	56904343	TRIM25|ENST00000570473.5	-	56895769,56899114,56901418,56904254	56895952,56899180,56901578,56904343	0.933333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	230230383	230230430	230230383	+	RAMPAGE_only	4	4	25	1.050527	4.418296	chr2	230230011	230230712	LTR|ERV1|LTR8	-	chr2	230225744	230313070	SP140|ENST00000343805.10	+	230225744,230237082,230238212,230241403,230243730,230244987,230247915,230248884,230250980,230255451,230269531,230269836,230270585,230284345,230285751,230287891,230290459,230292645,230294270,230297420,230309923,230310742,230311153,230311451,230312585	230225903,230237260,230238381,230241487,230243811,230245080,230248065,230248968,230251061,230255532,230269618,230269953,230270639,230284411,230285832,230287966,230290564,230292788,230294318,230297462,230310039,230310851,230311231,230311595,230313070	0.840000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	29643377	29643378	29643377	-	RAMPAGE_only	6	6	6	0.252126	2.584963	chr17	29643278	29643403	LTR|ERVL-MaLR|MLT1L	+	chr17	29630799	29761417	SSH2|ENST00000649863.1	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677738,29684684,29695523,29703062,29761417	0.833333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	12927723	12927765	12927733	+	High_confidence	51	52	170	7.143581	6.886715	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.605882
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	104588876	104588892	104588876	+	High_confidence	2	2	8	0.336169	2.500000	chr12	104588834	104589118	LINE|L1|L1MB3	+	chr12	104588847	104757339	CHST11|ENST00000549016.1	+	104588847,104601905,104756948	104588943,104601991,104757339	0.625000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	95509600	95509617	95509600	-	RAMPAGE_only	4	4	8	0.336169	2.750000	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	45522494	45522495	45522494	-	High_confidence	6	6	8	0.336169	2.750000	chr1	45522400	45522751	LTR|ERV1|LTR34	+	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	54310446	54310477	54310463	-	High_confidence	6	7	23	0.966484	4.175736	chr5	54310446	54310538	DNA|TcMar-Tigger|Tigger15a	+	chr5	53886444	54310415	ARL15|ENST00000510591.6	-	53886444,54113201,54154579,54171783,54310294	53886713,54113410,54154639,54171928,54310415	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	82093996	82094067	82094031	+	RAMPAGE_only	31	31	126	5.294654	5.314634	chr15	82093781	82094459	DNA|TcMar-Tigger|Tigger7	+	chr15	82088632	82095707	LINC01583|ENST00000559788.1	+	82088632,82091726,82095481	82088728,82091935,82095707	0.761905
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	35432452	35432500	35432475	-	High_confidence	5	5	22	0.924463	4.297079	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.954545
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	14202692	14202697	14202696	+	RAMPAGE_only	7	7	12	0.504253	2.913977	chr5	14202502	14202919	LTR|ERVL-MaLR|THE1B	+	chr5	14183797	14399400	TRIO|ENST00000509967.6	+	14183797,14270824,14280321,14286870,14290715,14293011,14297071,14304460,14316512,14330777,14336535,14358177,14359356,14363731,14364649,14366859,14368707,14369373,14374228,14378011,14381129,14387437,14387731,14388612,14389288,14390230,14390900,14394037,14397042,14398879	14183959,14270899,14280436,14287063,14291228,14293134,14297263,14304592,14316743,14330900,14336727,14358347,14359531,14363927,14364816,14366979,14368899,14369523,14374343,14378127,14381252,14387632,14387847,14388679,14389398,14390300,14390990,14394130,14397154,14399400	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	75833295	75833307	75833306	-	RAMPAGE_only	13	13	29	1.218611	4.134336	chr17	75833179	75833712	LINE|L2|L2a	+	chr17	75829661	75830661	UNC13D|ENST00000590856.1	-	75829661,75830361,75830577	75830151,75830482,75830661	0.689655
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	659659	659714	659713	+	RAMPAGE_only	14	14	35	1.470737	3.176011	chr18	659744	659794	LINE|L2|L2a	+	chr18	657742	673484	TYMS|ENST00000323224.7	+	657742,659640,662145,670691,671379,672859	657947,659714,662320,670867,671451,673484	0.971429
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	129489101	129489126	129489125	+	High_confidence	16	19	46	1.932969	5.055958	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.717391
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	89588164	89588188	89588167	+	RAMPAGE_only	11	11	31	1.302653	4.631616	chr15	89586398	89589443	LINE|L2|L2a	-	chr15	89575586	89628012	TICRR|ENST00000560985.5	+	89575586,89582685,89584288,89585707,89592046,89594414,89595392,89599323,89600584,89601297,89601488,89601736,89602795,89606767,89608802,89616404,89618151,89619707,89621392,89623622,89625935,89626955	89576240,89582965,89584527,89585942,89592176,89594554,89595611,89599475,89600685,89601391,89601568,89601976,89602892,89606825,89608949,89616495,89618210,89619842,89621550,89625786,89626061,89628012	0.870968
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	166850123	166850125	166850123	+	RAMPAGE_only	37	44	57	2.395201	4.924567	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	81192611	81192688	81192622	-	RAMPAGE_only	5	5	32	1.344674	4.309035	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.968750
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	18257238	18257267	18257245	-	High_confidence	26	26	73	3.067538	5.413625	chr17	18257196	18257329	LINE|L2|L2c	+	chr17	18254603	18257276	FLII|ENST00000581349.5	-	18254603,18254768,18255182,18256525,18256908,18257123	18254682,18254854,18255263,18256597,18257019,18257276	0.575342
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	85319272	85319294	85319272	-	RAMPAGE_only	7	8	14	0.588295	3.546594	chr2	85319170	85319474	SINE|Alu|AluSc	-	chr2	85318026	85328251	TGOLN2|ENST00000398263.6	-	85318026,85324914,85326507,85326978,85327916	85322741,85324998,85326804,85327685,85328251	0.928571
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	174410092	174410108	174410107	+	High_confidence	6	6	13	0.546274	3.392747	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410081	174427895	SCRN3|ENST00000549848.5	+	174410081,174422884,174424474,174427712	174410503,174423047,174424649,174427895	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	38825309	38825361	38825360	+	RAMPAGE_only	14	14	32	1.344674	4.452820	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.968750
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	39026177	39026205	39026204	+	High_confidence	4	4	12	0.504253	3.251629	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	50159437	50159441	50159440	-	RAMPAGE_only	11	11	19	0.798400	4.037401	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50117119	50180654	MSTRG.10816.1	-	50117119,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153076,50156998,50158564,50159430,50161481,50174453,50180571	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50174552,50180654	0.947368
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrX	53585017	53585024	53585017	-	RAMPAGE_only	10	11	18	0.756379	3.852169	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.944444
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	38789812	38789839	38789812	-	RAMPAGE_only	40	41	69	2.899453	4.938429	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	0.956522
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	47743725	47743728	47743727	+	High_confidence	12	15	20	0.840421	4.142664	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.600000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr21	33402881	33402883	33402881	+	High_confidence	5	8	10	0.420211	2.521928	chr21	33402902	33402973	SINE|Alu|AluSc	+	chr21	33402895	33437521	IFNGR2|ENST00000290219.10	+	33402895,33414887,33421479,33426883,33432176,33432713,33436827	33403616,33415020,33421685,33427032,33432336,33432871,33437521	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	131110234	131110235	131110234	+	RAMPAGE_only	10	10	14	0.588295	3.334679	chr9	131110227	131110282	SINE|MIR|MIR	+	chr9	131111401	131120438	AIF1L|ENST00000372301.2	+	131111401,131114576,131117755,131120234	131111663,131114618,131117918,131120438	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	53811930	53811935	53811930	-	High_confidence	11	11	26	1.092548	4.483856	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.846154
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	45450734	45450766	45450765	-	High_confidence	7	7	25	1.050527	4.563856	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.680000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	240022181	240022249	240022225	-	RAMPAGE_only	5	9	47	1.974990	3.276995	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.978723
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	62603046	62603067	62603046	-	High_confidence	5	8	29	1.218611	4.164498	chr20	62602934	62603232	LINE|L1|L1MEf	-	chr20	62596731	62603115	BX640514.2|ENST00000617730.1	-	62596731,62602977	62597218,62603115	0.551724
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	9554953	9554957	9554953	-	High_confidence	2	3	7	0.294147	2.584963	chr2	9554869	9555063	DNA|hAT-Tip100?|MamRep1879	-	chr2	9488636	9554729	ADAM17|ENST00000648548.1	-	9488636,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152,9551474,9554708	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526264,9527954,9535922,9536828,9543285,9551757,9554729	0.571429
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	182030773	182030784	182030773	+	High_confidence	32	33	75	3.151580	5.153549	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.693333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	307580	307581	307580	-	RAMPAGE_only	7	7	7	0.294147	2.807355	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	46266488	46266516	46266488	-	High_confidence	18	20	38	1.596800	4.721612	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.973684
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	151436801	151436820	151436819	-	High_confidence	6	6	15	0.630316	3.521641	chr6	151436689	151436932	LINE|CR1|L3	+	chr6	151423525	151436826	RMND1|ENST00000643550.1	-	151423525,151427481,151430137,151433154,151436419	151423631,151427582,151430177,151433230,151436826	0.866667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	150498048	150498095	150498048	+	High_confidence	7	7	20	0.840421	3.746439	chr5	150497958	150498068	DNA|hAT-Charlie|Charlie4z	+	chr5	150497926	150521323	NDST1|ENST00000518299.1	+	150497926,150520867	150498239,150521323	0.600000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	18063197	18063217	18063216	-	High_confidence	4	6	14	0.588295	3.039149	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	11225963	11226026	11225985	+	High_confidence	14	17	67	2.815411	5.655496	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11225982	11263253	HRH1|NM_001098211.1	+	11225982,11259002	11226059,11263253	0.776119
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	40747009	40747030	40747029	-	High_confidence	4	4	12	0.504253	3.095795	chr9	40746807	40747326	LTR|ERV1|LTR10A	-	chr9	40665678	40747048	MSTRG.37403.1	-	40665678,40746483	40666468,40747048	0.583333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	151166642	151166683	151166660	+	High_confidence	7	7	41	1.722864	5.064869	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	0.975610
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	10363706	10363707	10363706	+	High_confidence	88	96	111	4.664338	5.615135	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.864865
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	154928503	154928515	154928503	+	High_confidence	54	55	104	4.370191	5.525534	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.923077
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	101731413	101731435	101731413	+	High_confidence	5	5	18	0.756379	3.499228	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	15758206	15758246	15758211	+	High_confidence	8	8	25	1.050527	3.749275	chr1	15758111	15758311	SINE|MIR|MIRb	-	chr1	15758418	15786594	FBLIM1|ENST00000375766.7	+	15758418,15764495,15764963,15767375,15768527,15770408,15774617,15777169,15784547	15758848,15764685,15765233,15767563,15768630,15770578,15774796,15777287,15786594	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	46181621	46181644	46181643	+	RAMPAGE_only	6	6	14	0.588295	3.807355	chr1	46181615	46181833	LINE|L2|L2b	-	chr1	46183432	46185308	TSPAN1|ENST00000464786.5	+	46183432,46184190,46184593,46184784,46184959,46185224	46183683,46184397,46184668,46184883,46185115,46185308	0.928571
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	62545029	62545030	62545029	-	RAMPAGE_only	7	7	10	0.420211	2.947703	chr11	62545000	62545079	LINE|L2|L2c	-	chr11	62515904	62546835	AHNAK|ENST00000378024.8	-	62515904,62535002,62535944,62536468,62546659	62534074,62535190,62536098,62536567,62546835	0.900000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	129488730	129488905	129488856	+	High_confidence	84	84	482	20.254153	5.771337	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.964730
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	16101453	16102602	16102289	+	RAMPAGE_only	409	427	2867	120.474389	6.228136	chr19	16102068	16102357	SINE|Alu|AluSz	+	chr19	16088710	16102946	TPM4|ENST00000591645.2	+	16088710,16089044,16093535,16093683,16101263	16088849,16089120,16093598,16093753,16102946	0.998256
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	6639916	6639946	6639923	-	RAMPAGE_only	4	4	13	0.546274	2.777363	chr1	6639724	6639885	SINE|MIR|MIR	-	chr1	6634167	6645057	DNAJC11|ENST00000465508.5	-	6634167,6636116,6637197,6637446,6639901,6644557,6645040	6635700,6636246,6637340,6638364,6640057,6644674,6645057	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	69237179	69237186	69237179	-	RAMPAGE_only	4	5	15	0.630316	3.323231	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.800000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	16568975	16568994	16568975	-	RAMPAGE_only	2	3	8	0.336169	3.000000	chr19	16568832	16569026	LINE|L2|L2a	+	chr19	16550849	16571536	SLC35E1|ENST00000409648.8	-	16550849,16555151,16565036,16566531,16568031,16571511	16553909,16555397,16565132,16566657,16568169,16571536	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	45522809	45522859	45522858	-	High_confidence	111	111	210	8.824423	5.327066	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.976190
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	35307058	35307091	35307090	-	High_confidence	14	14	24	1.008506	4.055958	chr20	35306926	35307046	SINE|MIR|MIR3	-	chr20	35302565	35307082	UQCC1|ENST00000472559.5	-	35302565,35306665	35304069,35307082	0.958333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	39685111	39685150	39685149	+	High_confidence	21	21	47	1.974990	4.192887	chr8	39685147	39686244	LTR|ERVL-MaLR|MLT1A0-int	-	chr8	39685129	39730062	ADAM18|ENST00000523755.5	+	39685129,39692599,39706789,39723747,39729897	39685412,39692680,39706904,39723907,39730062	0.957447
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	117454949	117454973	117454972	+	High_confidence	4	5	10	0.420211	2.921928	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.800000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	152313903	152313914	152313903	-	RAMPAGE_only	5	5	12	0.504253	3.251629	chr6	152313861	152314306	LINE|L2|L2b	+	chr6	152121779	152311167	SYNE1|ENST00000409694.6	-	152121779,152130719,152132121,152133275,152135103,152136617,152139949,152141202,152143622,152148044,152149476,152151552,152151958,152154891,152155909,152164162,152176393,152180135,152189251,152201823,152206167,152207971,152211493,152213611,152214905,152218256,152219002,152220841,152221425,152224493,152225720,152230546,152231390,152232115,152233780,152234667,152236106,152236816,152239532,152242239,152244536,152249160,152254879,152255590,152256633,152262031,152268055,152269154,152278088,152281806,152283977,152293587,152293959,152300640,152301868,152308488,152309834,152310395,152310687	152122676,152130778,152132214,152133488,152135232,152136818,152140161,152141329,152143765,152148378,152149668,152151690,152152141,152155042,152156097,152164325,152176560,152180294,152189407,152201949,152206362,152208206,152211588,152213759,152215060,152218403,152219185,152221046,152221559,152224664,152225876,152230702,152231567,152232265,152233963,152234800,152236303,152236948,152239706,152242440,152244656,152249262,152255089,152255746,152256765,152262188,152268165,152269286,152278280,152281980,152284172,152293749,152294127,152300781,152302063,152308632,152310017,152310518,152311167	0.916667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	126772444	126772481	126772444	-	High_confidence	5	6	17	0.714358	3.500000	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126729786	126772411	LINC00944|ENST00000540684.5	-	126729786,126730762,126732342,126746260,126747930,126772078	126729966,126730803,126732407,126746332,126748127,126772411	0.764706
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	66408519	66408536	66408519	+	High_confidence	2	4	11	0.462232	3.321928	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.818182
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	15417190	15417191	15417190	+	High_confidence	57	58	81	3.403706	5.382474	chr8	15417004	15417387	LTR|ERVL-MaLR|MSTA	+	chr8	15417214	15673836	TUSC3|ENST00000503191.5	+	15417214,15483385,15623079,15659506,15662155,15673746	15417305,15483483,15623249,15659647,15662296,15673836	0.506173
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	63618044	63618046	63618045	-	High_confidence	16	29	33	1.386695	4.538910	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.757576
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	99410041	99410078	99410041	+	RAMPAGE_only	7	7	16	0.672337	3.250000	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.937500
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	75376210	75376281	75376210	-	RAMPAGE_only	9	10	48	2.017011	4.528465	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	33148434	33148466	33148451	-	RAMPAGE_only	3	3	16	0.672337	3.640224	chr15	33148397	33148709	LTR|ERVL|LTR33	+	chr15	32774309	33154914	FMN1|ENST00000559047.5	-	32774309,32776834,32798803,32804280,32857014,32888171,32898833,32899978,32901910,32908489,32910473,32926173,32964106,32968713,33008013,33064956,33088798,33153047	32774354,32776919,32798953,32804332,32857107,32888292,32898893,32900125,32902040,32908578,32910535,32926261,32964257,32969477,33008075,33065074,33088974,33154914	0.625000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	53874798	53874814	53874813	+	RAMPAGE_only	3	4	7	0.294147	2.521641	chr19	53874763	53874953	SINE|Alu|AluSx	-	chr19	53869405	53876435	MYADM|ENST00000391769.2	+	53869405,53869753,53873527	53869598,53869838,53876435	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	34588448	34588453	34588452	-	High_confidence	15	28	42	1.764885	4.802555	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.523810
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	50756643	50756662	50756643	-	RAMPAGE_only	2	2	8	0.336169	2.750000	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	71417305	71417343	71417305	+	RAMPAGE_only	3	3	15	0.630316	3.378783	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.866667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	134432448	134432458	134432452	-	High_confidence	3	3	10	0.420211	2.646439	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.800000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	1115389	1115420	1115389	-	High_confidence	14	23	69	2.899453	5.061585	chr17	1115307	1115433	LINE|L2|L2b	+	chr17	1072732	1115436	ABR|ENST00000570441.5	-	1072732,1073624,1079329,1083519,1091664,1100636,1115275	1072754,1073677,1079390,1083627,1091850,1100735,1115436	0.811594
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	28681382	28681404	28681403	+	RAMPAGE_only	3	3	9	0.378190	2.947703	chr17	28681439	28681743	SINE|Alu|AluSz6	+	chr17	28673401	28701539	MSTRG.15651.5	+	28673401,28674282,28674536,28674969,28675400,28676156,28677714,28678075,28678544,28678820,28681255,28681881,28682726,28682941,28683267,28683620,28684585,28684843,28686338,28686653,28687087,28687303,28688090,28689353,28690081,28690920,28693695,28695351,28696843,28697619,28697905,28699780,28700172,28700345,28701438	28673618,28674441,28674613,28675162,28675485,28676430,28677816,28678192,28678634,28678963,28681404,28681980,28682856,28683092,28683422,28683816,28684725,28684961,28686415,28686789,28687225,28687471,28688218,28689561,28690229,28691063,28693836,28695547,28697082,28697733,28698030,28699893,28700250,28701128,28701539	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	70257706	70257720	70257706	+	High_confidence	7	7	15	0.630316	3.506891	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr13	22040971	22040972	22040971	+	High_confidence	7	7	9	0.378190	2.947703	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	79631421	79631447	79631434	+	High_confidence	2	4	12	0.504253	2.845351	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.916667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	37297344	37297345	37297344	+	High_confidence	22	22	26	1.092548	4.563856	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.961538
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	34757081	34757104	34757081	+	High_confidence	5	5	18	0.756379	3.146286	chr6	34757127	34757285	LINE|L2|L2a	+	chr6	34757093	34773857	SNRPC|NM_003093.2	+	34757093,34757911,34762594,34767907,34770290,34773445	34757551,34757954,34762703,34767997,34770395,34773857	0.944444
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	7946878	7946898	7946878	+	High_confidence	311	312	840	35.297693	6.397572	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8143778	MSTRG.17194.5	+	7946869,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8143646	7946977,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8143778	0.975000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	43881157	43881167	43881157	+	High_confidence	3	3	7	0.294147	2.584963	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.714286
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	2727253	2727272	2727271	+	High_confidence	8	8	17	0.714358	3.875000	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.529412
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	112275864	112275954	112275864	-	RAMPAGE_only	3	3	22	0.924463	3.689704	chr9	112275710	112275819	LINE|L1|L1ME4a	-	chr9	112217714	112333026	PTBP3|NM_001244898.1	-	112217714,112224132,112227410,112228379,112231379,112232098,112234819,112250928,112252677,112262434,112268048,112275843,112297840,112332783	112223983,112224210,112227627,112228472,112231413,112232238,112234897,112251103,112252788,112262599,112268195,112276013,112297916,112333026	0.954545
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	50230995	50230996	50230995	+	High_confidence	12	12	12	0.504253	3.418296	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	80195810	80195811	80195810	-	RAMPAGE_only	17	17	20	0.840421	3.932138	chr10	80195647	80195982	LTR|ERVL-MaLR|THE1B	-	chr10	80155123	80204491	ANXA11|NM_001278408.1	-	80155123,80157640,80157966,80159099,80161934,80163348,80163533,80164052,80166083,80166889,80167225,80168968,80170799,80172806,80176106,80180940,80204238	80155912,80157763,80158025,80159195,80162028,80163405,80163613,80164143,80166197,80166984,80167313,80169358,80170915,80172869,80176155,80181455,80204491	0.950000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	197299249	197299320	197299316	-	High_confidence	8	8	54	2.269137	5.260847	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.907407
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	49872174	49872185	49872174	-	RAMPAGE_only	7	7	12	0.504253	3.095795	chr18	49871998	49872125	SINE|MIR|MIR3	-	chr18	49863261	49876283	MYO5B|ENST00000587895.1	-	49863261,49864140,49872166,49875686,49876235	49863327,49864380,49872232,49875827,49876283	0.833333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	129908891	129908915	129908903	-	RAMPAGE_only	3	3	11	0.462232	2.913977	chr9	129908556	129908853	SINE|Alu|AluSx	-	chr9	129899967	129927227	FNBP1|ENST00000478129.5	-	129899967,129900425,129902868,129908889,129924959,129927194	129900101,129900547,129903001,129908999,129925157,129927227	0.636364
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	141002226	141002245	141002244	-	High_confidence	6	6	11	0.462232	3.095795	chr8	141002088	141002337	LINE|L2|L2	-	chr8	140879479	141002110	PTK2|ENST00000517453.5	-	140879479,140890542,140925660,141002013	140879637,140890769,140925749,141002110	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	194486571	194486632	194486625	-	High_confidence	5	5	27	1.134569	4.085055	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194403464	194486659	MSTRG.27147.9	-	194403464,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194486659	0.962963
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	37344683	37344718	37344712	+	High_confidence	26	43	111	4.664338	5.040839	chr20	37344715	37344779	SINE|MIR|MIRc	+	chr20	37344684	37405432	SRC|NM_005417.4	+	37344684,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.846847
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	74449135	74449136	74449135	+	RAMPAGE_only	6	6	8	0.336169	3.000000	chr4	74449070	74449168	LINE|L1|L1MEf	+	chr4	74445133	74455009	AREG|ENST00000395748.7	+	74445133,74446533,74449046,74450379,74452543,74454758	74445406,74446782,74449248,74450532,74452655,74455009	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	206053091	206053108	206053091	+	High_confidence	4	4	12	0.504253	3.418296	chr1	206053000	206053902	LTR|ERV1|Harlequin-int	+	chr1	206052844	206062257	BX571818.1|ENST00000582596.5	+	206052844,206060400,206061344,206061661	206053265,206060449,206061397,206062257	0.750000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	225774967	225774970	225774967	+	RAMPAGE_only	8	10	15	0.630316	3.039149	chr1	225774781	225775174	LTR|ERVL-MaLR|MSTA	+	chr1	225777812	225790466	SRP9|NM_001130440.1	+	225777812,225783299,225786861,225789239	225778012,225783368,225786985,225790466	0.933333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	36122209	36122243	36122236	-	High_confidence	2	2	15	0.630316	3.664498	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.933333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	69051091	69051510	69051229	+	High_confidence	255	262	2086	87.655939	7.908645	chr4	69050859	69051337	LTR|ERV1|LTR2B	+	chr4	69051084	69113675	MSTRG.27961.1	+	69051084,69088553,69089471,69098539,69102806,69107174,69108102,69112456	69051602,69088906,69089603,69098688,69102938,69107262,69108322,69113675	0.643337
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr13	45206631	45206675	45206633	+	High_confidence	13	18	50	2.101053	4.013340	chr13	45206646	45206717	SINE|MIR|MIRb	+	chr13	45206354	45267333	GTF2F2|ENST00000494087.5	+	45206354,45252870,45267232	45207505,45252970,45267333	0.960000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	158809028	158809064	158809057	+	High_confidence	6	6	17	0.714358	3.690117	chr3	158808613	158809096	LTR|ERVL-MaLR|MLT1G	-	chr3	158809001	158819706	MFSD1|ENST00000489639.1	+	158809001,158813964,158819648	158809287,158814067,158819706	0.647059
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr13	46156437	46156457	46156456	-	RAMPAGE_only	3	3	11	0.462232	2.921928	chr13	46156240	46156407	DNA|TcMar-Tigger|Tigger19a	-	chr13	46146905	46153265	LCP1|ENST00000469227.5	-	46146905,46148351,46150935,46152779,46153138	46147103,46148447,46151078,46152945,46153265	0.545455
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrX	283491	283507	283506	+	High_confidence	3	4	6	0.252126	2.584963	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.833333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	409213	409214	409213	+	High_confidence	9	9	10	0.420211	2.641604	chr20	409120	409627	LINE|L2|L2b	+	chr20	408342	410764	RBCK1|ENST00000400247.3	+	408342,410411	408779,410764	0.800000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	17934766	17934767	17934766	+	RAMPAGE_only	13	13	13	0.546274	3.026987	chr8	17934728	17935264	LTR|Gypsy?|LTR85a	-	chr8	17937175	18027747	MSTRG.35354.13	+	17937175,17938739,17939690,17940041,17947185,17950614,17952969,17955469,17956603,17957263,17957539,17960013,17960314,17962033,17963100,17964567,17965998,17966327,17966979,17969576,17972328,17980590,17983232,17985446,17985958,17989858,17991541,17993482,18006262,18009546,18010608,18011236,18011666,18013963,18014583,18025360,18025543,18027636	17937379,17939009,17939861,17940158,17947363,17950724,17953186,17955653,17956777,17957421,17957775,17960165,17960444,17962174,17963291,17964768,17966218,17966473,17967170,17969748,17972687,17980755,17983289,17985619,17986087,17989979,17991700,17993619,18006397,18009744,18010668,18011366,18011827,18014036,18014840,18025453,18025658,18027747	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	57229233	57229240	57229233	+	High_confidence	6	8	13	0.546274	3.392747	chr12	57229177	57229349	SINE|MIR|MIRc	-	chr12	57229326	57234931	SHMT2|ENST00000328923.7	+	57229326,57230802,57231480,57231712,57232210,57232452,57232703,57233179,57233562,57233748,57234002,57234233	57229811,57231000,57231560,57231913,57232292,57232575,57232843,57233345,57233662,57233904,57234110,57234931	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	139509351	139509404	139509364	-	RAMPAGE_only	6	8	25	1.050527	3.468577	chr4	139509339	139509538	DNA|hAT-Charlie|Charlie30a	-	chr4	139506037	139556769	SETD7|NM_030648.3	-	139506037,139517884,139520276,139523353,139529030,139533164,139546919,139556097	139511843,139518042,139520394,139523435,139529220,139533366,139547049,139556769	0.920000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	10363662	10363664	10363662	+	High_confidence	15	19	28	1.176590	4.606739	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.607143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	51554667	51554696	51554682	+	High_confidence	335	335	1031	43.323717	7.675824	chr14	51553917	51555014	LINE|L1|L1MC3	+	chr14	51554682	51730430	MSTRG.10861.7	+	51554682,51570347,51689690,51698141,51701055,51702511,51704748,51708077,51711530,51712482,51715324,51720054,51721948,51725778,51727744	51554805,51570410,51689935,51698232,51701135,51702588,51704935,51708233,51711596,51712551,51715499,51720390,51722080,51725870,51730430	0.679922
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	155058736	155058773	155058772	+	High_confidence	21	23	52	2.185095	4.602486	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.884615
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	179877347	179877369	179877368	-	High_confidence	3	4	8	0.336169	2.521641	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179865064	179877790	TOR1AIP2|ENST00000495650.1	-	179865064,179877692	179865854,179877790	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	8981438	8981445	8981438	+	RAMPAGE_only	10	12	18	0.756379	3.149673	chr5	8981054	8981732	LTR|ERVL|MER54A	+	chr5	9001773	9045940	AC021088.1|ENST00000506519.1	+	9001773,9040144,9041496,9042060,9043165,9045804	9001894,9040367,9041604,9042165,9043277,9045940	0.944444
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	107872864	107872888	107872864	-	RAMPAGE_only	2	2	11	0.462232	2.921928	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.909091
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	87039797	87039870	87039869	-	High_confidence	15	15	49	2.059032	5.152569	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86880076	87040246	MSTRG.34059.4	-	86880076,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040246	0.897959
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	9234162	9234203	9234162	+	RAMPAGE_only	7	8	30	1.260632	4.494680	chr2	9234172	9234396	SINE|MIR|MIRb	+	chr2	9206764	9405683	ASAP2|ENST00000315273.4	+	9206764,9279316,9297299,9318523,9320287,9323120,9327825,9334737,9335092,9344531,9344730,9350807,9356046,9356178,9358755,9368424,9374754,9376907,9378943,9380740,9385244,9388293,9393481,9400022,9400741,9401273,9403252	9207230,9279389,9297445,9318598,9320337,9323250,9327911,9334813,9335179,9344635,9344800,9350895,9356095,9356345,9358889,9368519,9374944,9376993,9379059,9380808,9385358,9388546,9393647,9400072,9400830,9401396,9405683	0.633333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	20658321	20658349	20658346	+	High_confidence	41	53	237	9.958992	5.674133	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20770112	MSTRG.37099.2	+	20658308,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.894515
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	44738084	44738118	44738092	+	High_confidence	5	5	30	1.260632	4.215061	chr1	44738044	44739134	Retroposon|SVA|SVA_B	+	chr1	44738080	44739475	MSTRG.1121.1	+	44738080,44739360	44738594,44739475	0.733333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	75891300	75891305	75891300	+	RAMPAGE_only	3	4	8	0.336169	2.500000	chr6	75891350	75891661	SINE|Alu|AluY	+	chr6	75817523	75915177	MYO6|ENST00000627432.2	+	75817523,75822781,75828539,75830415,75832841,75835900,75840584,75841213,75844896,75848350,75855138,75857096,75858901,75861022,75862595,75866525,75866931,75870646,75873206,75879819,75880042,75881688,75886003,75886843,75890056,75891227,75892529,75894813,75895230,75898372,75907604,75908495,75911671,75914062,75914812	75817664,75822851,75828613,75830545,75832947,75835956,75840682,75841378,75844977,75848531,75855283,75857254,75858993,75861095,75862723,75866621,75867105,75870685,75873300,75879950,75880120,75881818,75886094,75886994,75890265,75891306,75892690,75894840,75895260,75898411,75907708,75908627,75911698,75914281,75915177	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	65440700	65440738	65440700	+	RAMPAGE_only	3	3	16	0.672337	3.589898	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.937500
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	174902807	174902836	174902831	+	RAMPAGE_only	6	8	16	0.672337	3.125000	chr1	174901606	174902942	LINE|L1|L1PA10	-	chr1	174877439	174995301	RABGAP1L|ENST00000392064.6	+	174877439,174957456,174969276,174976077,174978806,174982833,174988640,174989848	174877605,174957549,174969387,174976182,174978890,174982905,174988838,174995301	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	93496824	93496861	93496860	+	High_confidence	2	3	7	0.294147	2.521641	chr10	93496847	93496980	SINE|MIR|MIRb	-	chr10	93496631	93529092	CEP55|ENST00000371485.7	+	93496631,93500039,93503112,93506987,93515404,93516934,93518876,93519681,93527949	93496923,93500234,93503388,93507056,93515555,93517248,93518948,93519807,93529092	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	33068834	33068868	33068851	-	RAMPAGE_only	4	6	27	1.134569	3.813661	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.925926
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	28335904	28335940	28335915	-	High_confidence	3	5	24	1.008506	4.175736	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.916667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	152490966	152490967	152490966	-	RAMPAGE_only	8	8	9	0.378190	2.750000	chr6	152490744	152491147	LTR|ERV1|HERVH-int	+	chr6	152427603	152628331	SYNE1|ENST00000367253.8	-	152427603,152428204,152430111,152430481,152433794,152435940,152441129,152442074,152444410,152447457,152449532,152450624,152451046,152453585,152455425,152455885,152458756,152461596,152462737,152463352,152465257,152465981,152471596,152472300,152483084,152484834,152488395,152498741,152502632,152505200,152510192,152511010,152520458,152526079,152539959,152628264	152427816,152428392,152430210,152430709,152433945,152436101,152441270,152442245,152444578,152447622,152449641,152450833,152451205,152453720,152455590,152456044,152458930,152461740,152462890,152463517,152465460,152466078,152471765,152472413,152483249,152484972,152488503,152498792,152502742,152505397,152510371,152511103,152520542,152526175,152540021,152628331	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	55618850	55618870	55618869	-	High_confidence	10	10	30	1.260632	4.573557	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.966667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	2667155	2667183	2667182	+	High_confidence	4	4	13	0.546274	3.251629	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.923077
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	30354630	30354681	30354679	-	High_confidence	8	13	30	1.260632	4.481728	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	222715266	222715267	222715266	+	RAMPAGE_only	13	13	13	0.546274	2.719295	chr1	222715165	222715305	DNA|hAT-Charlie|MER5A1	+	chr1	222713400	222727209	BROX|ENST00000489191.1	+	222713400,222715144,222718924,222719262,222724091,222725449,222727167	222713416,222715269,222719031,222719359,222724164,222725555,222727209	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr21	33945809	33945810	33945809	-	RAMPAGE_only	18	18	18	0.756379	3.044110	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	21833826	21833836	21833826	-	High_confidence	2	2	7	0.294147	2.521641	chr1	21833729	21833783	LINE|L2|L2c	-	chr1	21829992	21833577	HSPG2|ENST00000635682.1	-	21829992,21830981,21831214,21831462,21831651,21832494,21832874,21833267,21833466	21830091,21831090,21831324,21831562,21831796,21832606,21832892,21833384,21833577	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	943152	943178	943159	+	High_confidence	50	50	144	6.051033	6.132715	chr11	943120	943579	LTR|ERV1|LTR2	-	chr11	943099	972191	AP2A2|ENST00000530801.5	+	943099,959436,970168,972061	943314,959505,970311,972191	0.770833
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	8384029	8384047	8384046	-	High_confidence	8	8	19	0.798400	4.058814	chr17	8384033	8384050	SINE|Alu|AluSq	-	chr17	8377515	8383250	RPL26|ENST00000293842.10	-	8377515,8379795,8382142,8383156	8377692,8379936,8382315,8383250	0.684211
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	9986898	9986905	9986898	+	High_confidence	11	14	35	1.470737	4.680758	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.600000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	210439587	210439588	210439587	+	High_confidence	10	11	11	0.462232	3.321928	chr1	210438946	210439615	LTR|ERVL|ERVL-B4-int	-	chr1	210439582	210676296	HHAT|ENST00000367009.2	+	210439582,210464504,210513152,210587897,210623525,210674287	210439753,210464655,210513188,210588099,210623670,210676296	0.818182
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	62600241	62600242	62600241	-	High_confidence	7	7	11	0.462232	3.095795	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.727273
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	67920113	67920136	67920113	+	High_confidence	2	2	10	0.420211	2.846439	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	61949845	61949852	61949851	+	High_confidence	4	4	9	0.378190	3.000000	chr11	61949804	61949945	SINE|MIR|MIR3	-	chr11	61949820	61964461	BEST1|ENST00000378043.8	+	61949820,61951770,61955106,61955717,61956843,61957386,61958145,61959497,61959891,61962254,61964103	61950427,61951958,61955201,61955951,61956998,61957464,61958298,61959578,61960043,61962893,61964461	0.777778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	52287852	52287881	52287880	-	RAMPAGE_only	3	3	8	0.336169	2.521641	chr12	52287798	52287841	DNA|hAT-Tip100|MER91C	-	chr12	52285912	52291515	KRT81|NM_002281.3	-	52285912,52286790,52287101,52287595,52287983,52288360,52289214,52290077,52291096	52286493,52286822,52287322,52287721,52288148,52288456,52289275,52290286,52291515	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	40586007	40586030	40586014	+	High_confidence	6	7	31	1.302653	4.413716	chr19	40585909	40586166	SINE|Alu|AluJr	-	chr19	40585572	40590355	SHKBP1|ENST00000597649.5	+	40585572,40586773,40588623,40589081,40590243	40585817,40586944,40588779,40589178,40590355	0.709677
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	143281669	143281687	143281686	-	High_confidence	10	13	48	2.017011	4.789417	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281250	MINCR|ENST00000519852.5	-	143280827,143281092	143280997,143281250	0.541667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	53464774	53464816	53464815	+	RAMPAGE_only	57	57	86	3.613811	5.426735	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.930233
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	3062922	3062978	3062922	-	High_confidence	19	22	71	2.983496	5.079688	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	128626781	128626821	128626810	-	RAMPAGE_only	7	10	30	1.260632	4.582119	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.966667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	23881939	23882030	23882029	+	RAMPAGE_only	8	8	33	1.386695	4.625000	chr18	23882065	23882312	LINE|L1|L1MB7	+	chr18	23884772	23931559	LAMA3|ENST00000586751.5	+	23884772,23890010,23894297,23894906,23898737,23898953,23899287,23901126,23903008,23903932,23904552,23905521,23907549,23907755,23909152,23912710,23914409,23914697,23915288,23916550,23920934,23921451,23928122,23928624,23931061,23931419	23884853,23890117,23894348,23895058,23898848,23899065,23899455,23901323,23903125,23904087,23904694,23905624,23907666,23907935,23909295,23912881,23914561,23914860,23915422,23916695,23921054,23921585,23928240,23928765,23931201,23931559	0.969697
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	3083203	3083252	3083251	+	RAMPAGE_only	5	5	24	1.008506	3.534219	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.958333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	82076525	82076526	82076525	-	RAMPAGE_only	6	8	8	0.336169	2.500000	chr17	82076254	82076887	LINE|L1|L1MEc	-	chr17	81511345	81523847	ACTG1|ENST00000575994.5	-	81511345,81511902,81512231,81523641	81511626,81512142,81512360,81523847	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	28234014	28234046	28234030	-	RAMPAGE_only	4	4	19	0.798400	3.683542	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.947368
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	43583484	43583527	43583484	-	RAMPAGE_only	2	2	15	0.630316	3.521641	chr5	43583213	43583828	LTR|ERV1|MER39B	-	chr5	43571593	43603104	NNT-AS1|ENST00000513560.6	-	43571593,43583466,43602777	43575935,43583566,43603104	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	114405744	114405786	114405785	+	RAMPAGE_only	5	6	18	0.756379	3.392147	chr11	114405747	114405830	LINE|CR1|X6B_LINE	-	chr11	114400673	114408123	RBM7|ENST00000545678.1	+	114400673,114405705,114407444	114400767,114405799,114408123	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	94022801	94022803	94022801	+	High_confidence	47	58	72	3.025517	5.565260	chr7	94022613	94022990	LTR|ERVL-MaLR|THE1C	+	chr7	94022832	94064723	AC003092.1|ENST00000415536.5	+	94022832,94061455,94061768,94064425	94022907,94061625,94061864,94064723	0.722222
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	46070214	46070215	46070214	-	RAMPAGE_only	7	7	7	0.294147	2.521641	chr20	46070041	46070172	LINE|L2|L2c	-	chr20	46060984	46089941	NCOA5|NM_020967.2	-	46060984,46063359,46065028,46067054,46068501,46070209,46079386,46089816	46062889,46063680,46065228,46067181,46068638,46070536,46079453,46089941	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	108724468	108724477	108724468	-	RAMPAGE_only	3	4	8	0.336169	2.750000	chr12	108724418	108724519	SINE|MIR|MIRc	+	chr12	108645108	108730843	CORO1C|NM_001276471.1	-	108645108,108648604,108648962,108652271,108654305,108657303,108658737,108662028,108678271,108701123,108730622	108647522,108648850,108649020,108652417,108654410,108657423,108658919,108662158,108678394,108701323,108730843	0.750000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	77011568	77011598	77011596	+	RAMPAGE_only	12	19	35	1.470737	4.204582	chr4	77011417	77011685	LINE|L2|L2c	-	chr4	77020531	77039206	SEPT11|ENST00000506731.5	+	77020531,77028628,77030782,77036772,77039072	77020670,77028761,77030970,77036837,77039206	0.657143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	84172094	84172104	84172094	-	High_confidence	14	14	22	0.924463	3.788755	chr10	84171986	84172465	LTR|ERV1|LTR2B	-	chr10	84167227	84172093	CERNA2|ENST00000647830.1	-	84167227,84171721	84168729,84172093	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	64439260	64439295	64439294	+	RAMPAGE_only	11	11	23	0.966484	3.219214	chr12	64439324	64439679	DNA|hAT-Charlie|Charlie4a	+	chr12	64404372	64448684	XPOT|NM_007235.4	+	64404372,64409961,64414906,64416697,64418045,64418875,64420069,64420352,64421234,64423004,64423181,64424598,64425037,64425337,64425814,64428050,64430048,64431537,64433413,64434506,64434793,64435626,64439243,64445074,64448104	64404804,64410095,64414989,64416754,64418115,64419094,64420254,64420521,64421471,64423043,64423244,64424723,64425182,64425457,64425909,64428120,64430287,64431823,64433603,64434623,64434909,64435674,64439315,64445131,64448684	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	17686056	17686076	17686056	+	High_confidence	14	18	36	1.512758	4.495907	chr17	17685599	17686175	LINE|L2|L2b	+	chr17	17686074	17810689	MSTRG.15481.4	+	17686074,17724027,17792932,17803755,17809389,17809969	17686188,17724159,17798513,17803849,17809439,17810689	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	113773650	113773686	113773685	-	High_confidence	19	19	44	1.848927	4.832561	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113744576	113773683	LINC01234|ENST00000547963.1	-	113744576,113773614	113746595,113773683	0.613636
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr13	27445106	27445108	27445107	-	RAMPAGE_only	6	10	10	0.420211	2.947703	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.900000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	27301454	27301458	27301454	+	RAMPAGE_only	3	3	8	0.336169	2.500000	chr1	27301504	27301735	SINE|MIR|MIRb	+	chr1	27305013	27306890	WDTC1|ENST00000472249.2	+	27305013,27306185,27306707	27305193,27306450,27306890	0.750000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	174410313	174410341	174410324	+	High_confidence	6	9	43	1.806906	4.359363	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.930233
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	50763485	50763527	50763521	+	High_confidence	4	4	19	0.798400	3.038562	chr12	50763350	50763657	SINE|Alu|AluJo	+	chr12	50763709	50814192	ATF1|ENST00000552510.5	+	50763709,50780139,50795908,50809455,50814009	50763741,50780238,50796009,50809589,50814192	0.894737
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	127531647	127531707	127531669	-	RAMPAGE_only	6	6	34	1.428716	4.601410	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	0.911765
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr22	24011756	24011757	24011756	+	High_confidence	18	18	18	0.756379	3.725481	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	3183052	3183078	3183077	-	RAMPAGE_only	7	7	17	0.714358	2.793345	chr8	3182937	3183057	SINE|Alu|AluY	-	chr8	3127385	3284654	CSMD1|ENST00000523387.5	-	3127385,3142464,3151396,3157896,3162158,3181109,3187868,3188886,3189911,3199713,3201611,3205503,3214496,3219254,3223728,3230039,3284143,3284471	3128900,3142674,3151513,3157966,3162277,3181214,3187965,3189011,3190115,3199809,3201725,3205620,3214691,3219442,3223867,3230231,3284346,3284654	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	9065163	9065174	9065173	+	High_confidence	3	3	12	0.504253	3.277613	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	75375985	75376005	75375985	-	RAMPAGE_only	3	3	8	0.336169	2.807355	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr22	26484024	26484046	26484032	+	High_confidence	2	2	9	0.378190	2.500000	chr22	26484072	26484276	SINE|MIR|MIRb	+	chr22	26483883	26491938	SRRD|NM_001013694.2	+	26483883,26486022,26488028,26488389,26490043,26491024,26491462	26484099,26486063,26488288,26488488,26490198,26491070,26491938	0.777778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	43690092	43690108	43690107	+	High_confidence	4	4	10	0.420211	2.921928	chr3	43690060	43690354	SINE|Alu|AluSp	-	chr3	43690107	43719541	ABHD5|ENST00000643520.1	+	43690107,43699275,43702214,43707653,43711708,43714946,43717670,43718442	43690202,43699361,43702587,43707771,43711863,43715058,43717857,43719541	0.600000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	11058808	11058821	11058812	-	RAMPAGE_only	3	3	9	0.378190	2.750000	chr1	11058682	11058785	SINE|MIR|MIRc	-	chr1	11054588	11060024	SRM|ENST00000376957.6	-	11054588,11054961,11055780,11056010,11056603,11058799,11059224,11059776	11054885,11055084,11055926,11056094,11056757,11058892,11059345,11060024	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	105332515	105332530	105332515	+	RAMPAGE_only	10	10	34	1.428716	4.418201	chr12	105332447	105332765	SINE|Alu|AluSq2	+	chr12	105330867	105370680	C12orf75|ENST00000549934.2	+	105330867,105348601,105365806,105366616,105367476,105370633	105330937,105348626,105365842,105366696,105367509,105370680	0.794118
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	99208117	99208134	99208118	-	High_confidence	16	21	38	1.596800	4.416608	chr7	99208098	99208244	SINE|Alu|AluSx3	-	chr7	99173573	99207506	KPNA7|ENST00000327442.6	-	99173573,99177919,99181882,99184928,99188299,99193018,99195069,99196083,99203105,99207400	99173794,99178066,99182065,99185162,99188563,99193101,99195338,99196166,99203240,99207506	0.921053
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	96303166	96303331	96303166	-	RAMPAGE_only	13	14	103	4.328170	5.443247	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	65411512	65411513	65411512	-	RAMPAGE_only	8	8	9	0.378190	2.500000	chr15	65411446	65411547	SINE|MIR|MIRb	+	chr15	65381486	65422922	MSTRG.12650.2	-	65381486,65384953,65385830,65386550,65388448,65388807,65389283,65390154,65391879,65392133,65393360,65394410,65395093,65395749,65396833,65400805,65402350,65410177,65411019,65422664	65384419,65385115,65386059,65386656,65388586,65388978,65389411,65390338,65391981,65392370,65393531,65394666,65395258,65396163,65396989,65400946,65402487,65410319,65411370,65422922	0.777778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	5514099	5514144	5514099	-	High_confidence	5	6	17	0.714358	3.734522	chr7	5513926	5514323	LINE|L2|L2a	+	chr7	5475796	5513798	FBXL18|NM_024963.5	-	5475796,5491230,5500487,5505411,5513656	5481931,5491449,5502031,5505630,5513798	0.529412
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	55716626	55716642	55716626	+	High_confidence	2	2	8	0.336169	2.750000	chr12	55716643	55716820	SINE|MIR|MIR3	+	chr12	55716589	55721794	BLOC1S1-RDH5|ENST00000549424.1	+	55716589,55719090,55721688	55716717,55719223,55721794	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	167934756	167934767	167934756	+	High_confidence	5	5	9	0.378190	2.947703	chr5	167934647	167934759	DNA|hAT-Ac|OldhAT1	-	chr5	167934861	168047462	TENM2|ENST00000518693.1	+	167934861,167952587,167992943,168047426	167934920,167952822,167993182,168047462	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	4143199	4143244	4143199	+	High_confidence	139	145	328	13.782909	5.934657	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.963415
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	33301705	33301745	33301723	-	RAMPAGE_only	5	5	22	0.924463	3.821928	chr6	33301622	33301752	LINE|L2|L2b	-	chr6	33299693	33314387	TAPBP|ENST00000434618.6	-	33299693,33303954,33304127,33304296,33304988,33313216,33313693,33314004	33301771,33303989,33304217,33304638,33305387,33313477,33313864,33314387	0.909091
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	1407203	1407231	1407203	-	High_confidence	7	7	22	0.924463	4.106603	chr18	1407047	1407340	SINE|Alu|AluY	+	chr18	1268310	1407180	LINC00470|ENST00000412816.7	-	1268310,1272441,1275965,1368484,1406986	1269852,1272511,1276077,1368597,1407180	0.727273
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	107284847	107284854	107284853	+	High_confidence	3	4	6	0.252126	2.584963	chr9	107284763	107284913	SINE|MIR|MIRb	+	chr9	107284768	107332194	RAD23B|NM_001244713.1	+	107284768,107300140,107302034,107306378,107311681,107318751,107321982,107323889,107324833,107329542	107284913,107300222,107302114,107306647,107311737,107318879,107322118,107324017,107325004,107332194	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	15738511	15738512	15738511	+	High_confidence	93	95	96	4.034022	4.423163	chr3	15738158	15739435	LTR|ERVK|MER11B	-	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.979167
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	42886621	42886676	42886675	+	RAMPAGE_only	6	6	28	1.176590	3.994680	chr6	42886713	42887011	SINE|Alu|AluSc	+	chr6	42879932	42889895	MSTRG.31783.9	+	42879932,42883450,42884612,42885973,42886255	42879951,42883614,42884750,42886083,42889895	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	62894596	62894611	62894596	+	RAMPAGE_only	11	11	30	1.260632	4.349192	chr15	62894534	62894826	SINE|Alu|AluSx3	+	chr15	62895811	62899543	AC103740.2|ENST00000557900.1	+	62895811,62898650	62896143,62899543	0.866667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr22	37855566	37855606	37855605	+	RAMPAGE_only	4	6	17	0.714358	3.337175	chr22	37855622	37855711	SINE|tRNA|LFSINE_Vert	+	chr22	37858564	37871290	EIF3L|ENST00000464790.1	+	37858564,37862968,37863271,37870175,37871199	37858740,37863038,37863345,37870347,37871290	0.705882
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	75336495	75336527	75336495	+	High_confidence	3	6	15	0.630316	3.640224	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.866667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	166850227	166850307	166850227	+	RAMPAGE_only	4	4	36	1.512758	4.760067	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	74614942	74614974	74614956	-	RAMPAGE_only	45	53	100	4.202106	5.580819	chr14	74614923	74615241	LTR|ERV1|LTR78B	-	chr14	74500410	74612378	LTBP2|ENST00000553939.5	-	74500410,74501440,74502563,74503218,74503468,74503925,74504777,74504982,74506047,74506697,74507178,74507972,74508603,74508829,74509237,74509733,74510090,74511244,74516821,74521910,74522789,74525123,74526074,74527346,74528482,74528957,74532425,74535925,74549862,74551063,74552186,74552891,74555502,74585853,74603634,74611450	74501029,74501590,74502934,74503386,74503606,74504054,74504861,74505174,74506191,74506823,74507310,74508095,74508729,74508952,74509363,74509859,74510213,74511364,74516941,74522039,74522918,74525225,74526114,74527366,74528698,74529122,74532548,74536000,74549965,74551350,74552393,74553062,74555693,74586118,74603705,74612378	0.820000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	91462063	91462211	91462210	-	High_confidence	7	7	60	2.521264	4.581050	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.966667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	9739945	9739972	9739945	+	RAMPAGE_only	3	3	13	0.546274	3.251629	chr12	9738753	9740142	LTR|ERV1|LTR12C	-	chr12	9827480	9845007	KLRF1|ENST00000617889.4	+	9827480,9832315,9833302,9841811,9842320,9844417	9827629,9832414,9833452,9841951,9842433,9845007	0.538462
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	152548738	152548739	152548738	+	RAMPAGE_only	4	4	6	0.252126	2.584963	chr2	152548232	152548744	LTR|ERVL|MER68	+	chr2	152335236	152649834	FMNL2|NM_052905.3	+	152335236,152521942,152542738,152549020,152558739,152560882,152575135,152578887,152580955,152607338,152611494,152614850,152617090,152618845,152619508,152625437,152626524,152628298,152629655,152629824,152632007,152636426,152637572,152639957,152640790,152647795	152335720,152522026,152542819,152549097,152558823,152561035,152575244,152578964,152581049,152607413,152611605,152615000,152617192,152619158,152619718,152625562,152626727,152628533,152629724,152629905,152632137,152636590,152637674,152640056,152640914,152649834	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	41632185	41632232	41632185	-	High_confidence	3	3	12	0.504253	3.022055	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41521337	41632124	KC6|ENST00000599934.1	-	41521337,41525354,41564798,41631999	41521496,41525526,41564898,41632124	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	42809429	42809476	42809475	+	High_confidence	20	23	111	4.664338	6.064510	chr3	42809252	42809581	LTR|ERV1|MER39	-	chr3	42809491	42864876	ACKR2|ENST00000497921.2	+	42809491,42819630,42839093,42864465	42809532,42819711,42839279,42864876	0.702703
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr13	98992645	98992673	98992645	+	High_confidence	142	149	225	9.454739	5.972837	chr13	98992456	98992807	LTR|ERVL-MaLR|THE1B	+	chr13	98992671	98994040	MSTRG.10195.1	+	98992671,98993474	98993051,98994040	0.951111
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrX	47179134	47179159	47179158	+	High_confidence	3	3	8	0.336169	2.750000	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	43490729	43490785	43490765	-	RAMPAGE_only	9	10	89	3.739875	5.724533	chr3	43490741	43491230	LTR|ERV1|MER50	+	chr3	43366347	43621965	ANO10|ENST00000350459.8	-	43366347,43432610,43549719,43555277,43561219,43565652,43574808,43580352,43598531,43600383,43605713,43621908	43366974,43432727,43549848,43555469,43561402,43565727,43574864,43580472,43598666,43600581,43605863,43621965	0.943820
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	52615356	52615427	52615426	-	High_confidence	12	14	36	1.512758	4.351594	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	111898009	111898019	111898009	+	High_confidence	2	2	9	0.378190	2.750000	chr9	111897961	111898169	LINE|L2|L2a	-	chr9	111897200	111929666	UGCG|ENST00000495085.1	+	111897200,111914604,111922816,111924776,111926383,111929499	111897313,111914746,111922951,111924878,111926496,111929666	0.555556
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	133365989	133366016	133365989	-	High_confidence	2	2	10	0.420211	2.947703	chr9	133365731	133365944	DNA|TcMar-Tigger|Tigger4a	-	chr9	133363452	133366077	SURF4|ENST00000465565.1	-	133363452,133365984	133363759,133366077	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	138347725	138347758	138347725	+	High_confidence	8	8	43	1.806906	4.004883	chr3	138347598	138347891	SINE|Alu|AluSx	-	chr3	138347696	138405533	MRAS|ENST00000289104.8	+	138347696,138372865,138397323,138398468,138400533,138402169	138348325,138373076,138397477,138398568,138400613,138405533	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	234682624	234682676	234682675	+	High_confidence	9	9	32	1.344674	4.812500	chr2	234682602	234682802	LTR|ERVL-MaLR|MLT1H	-	chr2	234682667	234717764	LINC01173|NR_132376.1	+	234682667,234695648,234717634	234682768,234695748,234717764	0.531250
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	33301376	33301528	33301521	-	RAMPAGE_only	16	18	162	6.807412	5.816866	chr6	33301291	33301595	SINE|Alu|AluSx	+	chr6	33299693	33314387	TAPBP|ENST00000434618.6	-	33299693,33303954,33304127,33304296,33304988,33313216,33313693,33314004	33301771,33303989,33304217,33304638,33305387,33313477,33313864,33314387	0.993827
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr22	50785259	50785278	50785259	+	RAMPAGE_only	2	4	12	0.504253	2.918296	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.916667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr22	36481970	36482026	36482025	-	High_confidence	4	4	14	0.588295	3.093069	chr22	36481702	36481993	SINE|Alu|AluSc	-	chr22	36467035	36482030	TXN2|ENST00000216185.6	-	36467035,36476732,36480574,36481563	36467917,36476856,36480837,36482030	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	131316026	131316085	131316026	+	RAMPAGE_only	3	3	16	0.672337	3.373557	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131264099	131394667	CDC42SE2|ENST00000505065.1	+	131264099,131315975,131359208,131385542,131390992	131264166,131316144,131359547,131385644,131394667	0.937500
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	145736020	145736023	145736020	-	High_confidence	5	5	12	0.504253	3.418296	chr6	145735975	145736071	SINE|MIR|MIR3	+	chr6	145625352	145736023	EPM2A|ENST00000611340.5	-	145625352,145635244,145686121,145735995	145627693,145635486,145686296,145736023	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	761107	761120	761114	+	High_confidence	10	11	29	1.218611	4.208410	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.862069
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	73072209	73072234	73072233	-	High_confidence	4	4	12	0.504253	3.418296	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.833333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	110410982	110411019	110411002	+	RAMPAGE_only	2	3	10	0.420211	2.921928	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110365732	110506258	ENPEP|ENST00000510961.1	+	110365732,110488540,110491032,110500028,110506182	110365804,110488682,110491164,110500163,110506258	0.600000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	107580245	107580267	107580264	+	High_confidence	541	542	2599	109.212744	6.860824	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.970758
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	152746503	152746544	152746512	+	High_confidence	79	92	184	7.731876	5.979815	chr6	152746337	152746578	DNA|TcMar-Tigger|MER44B	-	chr6	152746513	152759765	MSTRG.32829.1	+	152746513,152750889,152752167,152754165,152755268,152756133,152757095,152758909	152746531,152750959,152752284,152754288,152755373,152756265,152757184,152759765	0.777174
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	46243235	46243309	46243235	-	RAMPAGE_only	5	6	46	1.932969	4.776507	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.978261
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrX	16712869	16712923	16712889	-	High_confidence	37	41	127	5.336675	5.996516	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.952756
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	102449836	102449845	102449836	+	High_confidence	5	5	25	1.050527	4.083856	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.920000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	58578102	58578133	58578102	-	High_confidence	33	44	173	7.269644	5.777157	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.826590
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	50271485	50271486	50271485	+	High_confidence	37	37	41	1.722864	4.735362	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	0.975610
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	14511309	14511354	14511342	-	RAMPAGE_only	6	6	26	1.092548	4.213661	chr16	14511277	14511448	SINE|tRNA-RTE|MamSINE1	+	chr16	14446956	14501689	PARN|ENST00000564882.5	-	14446956,14482637,14501552	14447081,14482827,14501689	0.692308
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	200411654	200411684	200411683	+	High_confidence	9	9	34	1.428716	3.843139	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411693	200478360	AC104461.1|ENST00000647823.1	+	200411693,200444617,200472040,200473908,200477967	200411962,200444945,200472119,200474186,200478360	0.882353
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	76551102	76551129	76551126	-	High_confidence	5	5	12	0.504253	3.459432	chr17	76550828	76551081	SINE|MIR|MIRb	-	chr17	76528533	76551175	CYGB|ENST00000589145.1	-	76528533,76530978,76531459,76550861	76528611,76531142,76531691,76551175	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	20423697	20423733	20423703	-	RAMPAGE_only	6	9	23	0.966484	3.670969	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.913043
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	761013	761068	761067	+	High_confidence	3	3	10	0.420211	2.646439	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	131112987	131112997	131112996	+	RAMPAGE_only	4	4	12	0.504253	3.251629	chr9	131112952	131113212	LINE|L2|L2a	-	chr9	131111401	131120438	AIF1L|ENST00000372301.2	+	131111401,131114576,131117755,131120234	131111663,131114618,131117918,131120438	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	157533600	157533615	157533600	-	High_confidence	187	195	341	14.329183	6.409907	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157460214	157533606	VEPH1|ENST00000487753.5	-	157460214,157470313,157495211,157533512	157460355,157470529,157495506,157533606	0.903226
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrY	12686530	12686549	12686530	+	RAMPAGE_only	7	7	12	0.504253	3.084963	chrY	12685409	12686624	LTR|ERV1|MER4-int	+	chrY	12701230	12860839	USP9Y|ENST00000338981.7	+	12701230,12708633,12709387,12720588,12722107,12725112,12726574,12735611,12735997,12736410,12738156,12739524,12757191,12758505,12760483,12771067,12773582,12775470,12776648,12778018,12778605,12779525,12786202,12786521,12790406,12791498,12793031,12810178,12810671,12811634,12812829,12816123,12818419,12833687,12837910,12839863,12841009,12842239,12843063,12846332,12846932,12847238,12856339,12856632,12857565,12859278	12702055,12708693,12709543,12720737,12722187,12725225,12726793,12735727,12736249,12736549,12738309,12739629,12757398,12758642,12760617,12771155,12773925,12775566,12776860,12778259,12778755,12779646,12786333,12786800,12790532,12791624,12793201,12810287,12810818,12811781,12813052,12816344,12818610,12833861,12838052,12840614,12841133,12842465,12843193,12846518,12847153,12847327,12856496,12856845,12857661,12860839	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	102431228	102431250	102431247	-	High_confidence	8	9	36	1.512758	4.457575	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.805556
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	160412454	160412465	160412464	-	RAMPAGE_only	3	3	9	0.378190	2.750000	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160406348	160408421	SLU7|ENST00000520841.1	-	160406348,160407475,160407745,160407970,160408328	160406629,160407615,160407813,160408068,160408421	0.777778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	38691809	38691812	38691809	-	RAMPAGE_only	4	4	9	0.378190	2.750000	chr12	38691652	38691963	LTR|ERVL-MaLR|MLT1A1	-	chr12	38653370	38679678	CPNE8|ENST00000546603.5	-	38653370,38670728,38675716,38677451,38679577	38654070,38670802,38675774,38677554,38679678	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	33021454	33021456	33021455	-	RAMPAGE_only	9	12	15	0.630316	3.378783	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.933333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	55280199	55280232	55280199	-	High_confidence	15	15	81	3.403706	3.979980	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.950617
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	127522793	127522834	127522793	-	RAMPAGE_only	33	37	147	6.177096	5.886939	chr9	127522529	127523072	LINE|L2|L2a	+	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	0.972789
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	32953755	32953793	32953785	-	RAMPAGE_only	6	6	20	0.840421	3.681881	chr10	32953663	32953796	SINE|MIR|MIRc	-	chr10	32928149	32955663	ITGB1|ENST00000480226.5	-	32928149,32929821,32932514,32935491,32955569	32928264,32930044,32932600,32935558,32955663	0.950000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	55268644	55268673	55268644	-	High_confidence	2	2	10	0.420211	2.503258	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	0.900000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	4355592	4355593	4355592	-	High_confidence	232	233	233	9.790908	5.498619	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.858369
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	210439435	210439451	210439448	+	High_confidence	49	50	114	4.790401	6.062854	chr1	210438946	210439615	LTR|ERVL|ERVL-B4-int	-	chr1	210439582	210676296	HHAT|ENST00000367009.2	+	210439582,210464504,210513152,210587897,210623525,210674287	210439753,210464655,210513188,210588099,210623670,210676296	0.868421
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	65645698	65645700	65645698	-	RAMPAGE_only	9	16	17	0.714358	3.577820	chr8	65645542	65645827	SINE|Alu|AluJo	-	chr8	65602455	65634217	ARMC1|NM_018120.5	-	65602455,65605262,65605421,65613243,65622262,65627215,65633997	65604585,65605337,65605538,65613433,65622354,65627433,65634217	0.941176
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	26644598	26644606	26644598	-	RAMPAGE_only	5	5	10	0.420211	3.121928	chr12	26644435	26644798	LTR|ERVL-MaLR|THE1B	-	chr12	26335336	26833198	ITPR2|NM_002223.3	-	26335336,26340166,26387433,26398875,26400127,26411319,26415302,26419048,26427912,26436220,26439126,26443542,26475295,26476911,26481130,26483697,26486103,26487067,26494152,26495151,26550246,26556232,26561761,26578712,26580026,26595464,26596882,26599144,26599986,26602369,26602616,26621122,26622239,26624298,26628032,26631865,26653975,26655707,26656296,26657706,26658010,26659112,26663684,26665909,26681873,26682573,26686480,26695605,26711172,26715298,26715751,26716143,26722396,26724655,26725649,26790156,26832689	26339483,26340328,26387594,26399041,26400258,26411412,26415498,26419213,26428088,26436346,26439319,26443650,26475418,26477007,26481241,26483898,26486360,26487251,26494340,26495260,26550355,26556375,26561952,26578833,26580155,26595590,26597134,26599345,26600109,26602495,26602706,26621296,26622405,26624356,26628162,26632059,26654126,26655852,26656548,26657892,26658130,26659285,26663846,26666051,26682034,26682673,26686632,26695650,26711268,26715445,26715835,26716242,26722555,26724742,26725765,26790227,26833198	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	112452411	112452419	112452418	+	High_confidence	4	4	8	0.336169	2.807355	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112477203	IFRD1|NM_001197079.1	+	112452057,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112452511,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112477203	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	6853886	6853943	6853909	+	High_confidence	6	6	35	1.470737	4.822001	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6895102	ALOX12P2|ENST00000576636.6	+	6853929,6854213,6892002,6894883,6895095	6854060,6854453,6892075,6895006,6895102	0.657143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	187995728	187995776	187995775	+	High_confidence	13	15	70	2.941474	5.042933	chr4	187995806	187995869	DNA|hAT-Charlie|MER112	+	chr4	187995770	188005050	ZFP42|NM_174900.4	+	187995770,187999107,187999608,188002712	187995840,187999273,187999685,188005050	0.900000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	103353930	103353957	103353930	+	High_confidence	4	4	13	0.546274	2.815072	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.615385
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	156252929	156252951	156252930	-	RAMPAGE_only	2	3	11	0.462232	2.921928	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156250032	156251380	SMG5|ENST00000476954.1	-	156250032,156250857	156250670,156251380	0.727273
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	9323740	9323754	9323740	+	High_confidence	2	2	7	0.294147	2.584963	chr19	9323408	9324010	LTR|ERV1|MER51A	+	chr19	9323771	9343845	ZNF559|NM_001202411.1	+	9323771,9324694,9333014,9338493,9339192,9341101,9341616	9324228,9324780,9333113,9338582,9339319,9341184,9343845	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	87040212	87040223	87040214	-	High_confidence	59	106	186	7.815918	5.890305	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86880076	87040246	MSTRG.34059.4	-	86880076,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040246	0.967742
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	2975606	2975661	2975621	+	RAMPAGE_only	14	14	80	3.361685	5.288863	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2853875	3037741	MSTRG.15094.6	+	2853875,2905283,2957758,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2854102,2905368,2957794,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037741	0.975000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	59619888	59619923	59619894	+	High_confidence	1331	1781	6349	266.791733	5.649575	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.955269
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	49738924	49738955	49738924	+	High_confidence	3	3	8	0.336169	2.500000	chr12	49735987	49739725	LTR|ERV1|Harlequin-int	+	chr12	49738992	49758483	TMBIM6|ENST00000546796.5	+	49738992,49752463,49752972,49755634,49758226,49758382	49739082,49752549,49753081,49755755,49758275,49758483	0.625000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	50756764	50756790	50756764	-	RAMPAGE_only	2	2	8	0.336169	2.521641	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	81664332	81664344	81664343	+	RAMPAGE_only	3	5	8	0.336169	2.807355	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	76345574	76345575	76345574	-	RAMPAGE_only	17	17	22	0.924463	3.521928	chr17	76345479	76345626	SINE|Alu|AluJb	+	chr17	76330482	76353628	PRPSAP1|ENST00000494662.5	-	76330482,76332262,76344670,76348528,76353533	76330666,76332435,76344737,76348581,76353628	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	54413473	54413493	54413473	-	RAMPAGE_only	4	4	9	0.378190	3.169925	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54226631	54406419	SSBP3|ENST00000371320.7	-	54226631,54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54257126,54258068,54281437,54401860,54404575,54404857,54405952	54227160,54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257186,54258149,54281527,54401945,54404637,54404930,54406419	0.777778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	80180941	80180942	80180941	-	RAMPAGE_only	7	7	7	0.294147	2.807355	chr10	80180757	80181106	LTR|ERVL-MaLR|MSTD	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	0.714286
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	20732396	20732429	20732428	+	RAMPAGE_only	4	4	9	0.378190	2.750000	chr9	20732128	20733009	LINE|L2|L2b	-	chr9	20726350	20770133	FOCAD|ENST00000604103.1	+	20726350,20740235,20758089,20764873,20770031	20726432,20740340,20758191,20765073,20770133	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	169697625	169697626	169697625	+	RAMPAGE_only	11	11	16	0.672337	3.373557	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169662721	169723183	CLCN3|ENST00000504131.6	+	169662721,169663113,169663526,169680049,169687657,169689042,169690529,169692113,169695611,169697188,169703997,169706867,169713078,169719906	169662738,169663114,169663617,169680207,169687757,169689230,169690652,169692320,169695692,169697734,169704184,169707266,169713295,169723183	0.937500
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	39685181	39685194	39685193	+	High_confidence	11	11	26	1.092548	3.509275	chr8	39685147	39686244	LTR|ERVL-MaLR|MLT1A0-int	-	chr8	39685173	39723958	ADAM18|ENST00000524117.1	+	39685173,39692599,39706789,39723747	39685412,39692680,39706904,39723958	0.961538
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	61756621	61756640	61756639	+	RAMPAGE_only	5	5	11	0.462232	3.121928	chr11	61756575	61756655	LINE|L2|L2b	+	chr11	61755388	61788517	MYRF|ENST00000265460.9	+	61755388,61765624,61765957,61769259,61770245,61771499,61771828,61773966,61776055,61776321,61776786,61777263,61777733,61778379,61779262,61779497,61779841,61780221,61780956,61781137,61781572,61783512,61783850,61784279,61785799,61786062	61755442,61765712,61766221,61769321,61770525,61771750,61771952,61774162,61776132,61776432,61776877,61777464,61777845,61778489,61779423,61779570,61779930,61780290,61781045,61781329,61781824,61783600,61783925,61784385,61785874,61788517	0.636364
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	174874395	174874441	174874422	+	High_confidence	8	8	57	2.395201	5.074863	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.824561
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	169115334	169115349	169115348	-	RAMPAGE_only	9	15	46	1.932969	4.941744	chr4	169115255	169115782	DNA|hAT-Charlie|MER1A	+	chr4	169094255	169271098	SH3RF1|NM_020870.3	-	169094255,169106846,169116268,169117522,169120818,169122099,169130045,169136317,169155479,169156403,169268819,169270858	169096687,169107205,169116630,169117782,169120989,169122266,169130156,169136620,169155575,169156679,169269307,169271098	0.869565
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	218287266	218287283	218287279	-	High_confidence	20	20	49	2.059032	4.392785	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.918367
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	34998893	34998895	34998893	+	RAMPAGE_only	3	5	8	0.336169	2.807355	chr6	34998835	34999233	LTR|ERV1|HERVE_a-int	+	chr6	34889313	35091413	MSTRG.31663.3	+	34889313,34967238,34970009,34972580,34981689,34982751,34983112,34983323,34985081,34989223,34994301,35017472,35054098,35060146,35078557,35079515,35079820,35080993,35082690,35083154,35083416,35084120,35085765,35086951,35088605	34889599,34967319,34970166,34972643,34981986,34982827,34983214,34983425,34985278,34989316,34994422,35018059,35054165,35060253,35078656,35079668,35079928,35081158,35082816,35083226,35083503,35084258,35085936,35087049,35091413	0.750000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	2837174	2837175	2837174	+	RAMPAGE_only	5	7	7	0.294147	2.521641	chr4	2837046	2837327	SINE|Alu|AluSx1	-	chr4	2818813	2841098	SH3BP2|ENST00000356331.9	+	2818813,2820613,2822934,2824612,2825125,2827229,2827605,2829492,2831570,2831922,2832330,2832989,2833696	2819070,2820753,2823037,2824730,2825196,2827318,2827674,2830147,2831679,2831978,2832412,2833049,2841098	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	143039246	143039257	143039246	+	High_confidence	4	5	13	0.546274	2.918296	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.923077
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	79631256	79631303	79631273	+	High_confidence	144	155	741	31.137608	6.521117	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.982456
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	218642042	218642045	218642042	-	RAMPAGE_only	5	5	9	0.378190	2.947703	chr2	218641825	218642010	SINE|MIR|MIRb	-	chr2	218634153	218659476	MSTRG.22374.1	-	218634153,218640663,218642027,218646170,218648634,218650358,218651700,218656149,218658700,218658979,218659368	218638808,218640769,218645064,218646348,218649459,218650526,218652300,218656463,218658876,218659130,218659476	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	182928785	182928798	182928797	-	RAMPAGE_only	5	6	14	0.588295	3.026987	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	77127869	77127873	77127872	+	High_confidence	5	5	9	0.378190	3.000000	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.777778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	6208681	6208682	6208681	-	High_confidence	56	56	56	2.353180	3.494394	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	603490	603501	603495	+	High_confidence	4	4	9	0.378190	2.500000	chr7	603435	603558	LINE|L2|L2c	+	chr7	603397	608502	LOC101926963|NR_110055.1	+	603397,607864	603616,608502	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	59892716	59892746	59892716	-	High_confidence	12	13	25	1.050527	4.262692	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.800000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrX	10589678	10589825	10589824	-	High_confidence	14	14	91	3.823917	5.304958	chrX	10589469	10589852	LTR|ERV1|HERVE_a-int	-	chrX	10445555	10589909	MID1|ENST00000380780.5	-	10445555,10454869,10459645,10469696,10474622,10482479,10495583,10523091,10566887,10589586	10449716,10455077,10459807,10469840,10474750,10482628,10495691,10523187,10567603,10589909	0.945055
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	23951347	23951366	23951365	+	High_confidence	6	6	17	0.714358	3.327820	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.764706
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	122332082	122332099	122332098	+	High_confidence	3	4	11	0.462232	3.321928	chr10	122331999	122332294	LINE|L2|L2a	+	chr10	122331966	122336622	BTBD16|ENST00000495370.2	+	122331966,122332435,122334880,122336493	122332258,122332513,122334979,122336622	0.727273
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr13	32527410	32527438	32527431	-	RAMPAGE_only	2	4	12	0.504253	3.277613	chr13	32527156	32527383	SINE|MIR|MIRc	-	chr13	32516893	32525579	N4BP2L2|ENST00000503814.1	-	32516893,32521372	32518003,32525579	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	44619050	44619051	44619050	+	RAMPAGE_only	109	111	120	5.042528	5.963747	chr7	44618793	44619481	LTR|ERVL|MER21A	+	chr7	44606638	44709066	OGDH|ENST00000222673.5	+	44606638,44624316,44645326,44647656,44666735,44673786,44674410,44675177,44675969,44681719,44693824,44694423,44696024,44696428,44696913,44697369,44697603,44698191,44700140,44701542,44707224,44707581,44707878	44606653,44624565,44645518,44647759,44666851,44673941,44674557,44675268,44676149,44681848,44694004,44694576,44696127,44696557,44697064,44697497,44697782,44698263,44700269,44701615,44707388,44707736,44709066	0.866667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	40746918	40746926	40746925	-	High_confidence	13	14	47	1.974990	4.403784	chr9	40746807	40747326	LTR|ERV1|LTR10A	-	chr9	40665678	40747048	MSTRG.37403.1	-	40665678,40746483	40666468,40747048	0.702128
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	135867567	135867587	135867567	+	RAMPAGE_only	4	4	12	0.504253	3.418296	chr6	135867424	135867627	LINE|L1|L1PA12	-	chr6	135851695	136195574	PDE7B|ENST00000308191.10	+	135851695,135947463,136108730,136147350,136149086,136151159,136154074,136155626,136173796,136178996,136181226,136187035,136191613	135852019,135947524,136108814,136147502,136149150,136151255,136154175,136155758,136173888,136179141,136181323,136187116,136195574	0.916667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	133089588	133089693	133089692	+	RAMPAGE_only	20	20	109	4.580296	5.689991	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	233357052	233357073	233357072	+	RAMPAGE_only	3	3	9	0.378190	2.750000	chr2	233356905	233357200	LTR|ERVL|LTR33A_	-	chr2	233354506	233472097	DGKD|NM_152879.2	+	233354506,233388256,233390402,233434379,233434768,233435817,233436315,233437376,233438216,233441886,233445622,233446711,233448086,233448275,233449102,233449981,233450921,233451963,233454762,233456898,233457220,233458283,233459756,233460193,233462347,233462642,233464163,233467085,233468422,233469370	233354674,233388367,233390483,233434484,233434901,233435924,233436441,233437479,233438379,233441995,233445762,233446796,233448181,233448375,233449376,233450131,233451050,233452060,233454873,233456995,233457328,233458397,233459891,233460345,233462459,233462735,233464283,233467203,233468553,233472097	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	9987127	9987169	9987162	+	High_confidence	13	13	25	1.050527	3.143465	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9987214	10003097	EMC3-AS1|ENST00000440568.1	+	9987214,9987814,9988711,10002716	9987264,9987905,9988747,10003097	0.560000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	21360449	21360499	21360449	-	RAMPAGE_only	3	3	17	0.714358	3.750000	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351478	21358402	SUPT16H|ENST00000557394.5	-	21351478,21353487,21353702,21354410,21357196,21357926	21352818,21353565,21353832,21354540,21357366,21358402	0.647059
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	70401422	70401479	70401422	+	RAMPAGE_only	4	5	28	1.176590	4.521641	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	10199400	10199417	10199400	+	RAMPAGE_only	2	2	8	0.336169	2.521641	chr3	10199343	10199441	SINE|MIR|MIRb	+	chr3	10164878	10243743	IRAK2|NM_001570.3	+	10164878,10177837,10200368,10209588,10213206,10213483,10216933,10219679,10222635,10226370,10234458,10238747,10242115	10165048,10178020,10200515,10209692,10213401,10213548,10217048,10219789,10222831,10226433,10234659,10239039,10243743	0.625000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	62600209	62600211	62600209	-	High_confidence	3	5	8	0.336169	2.521641	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.625000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	88238062	88238071	88238062	-	High_confidence	3	3	7	0.294147	2.584963	chr16	88237815	88238106	LINE|L1|L1MC1	-	chr16	88234878	88237922	MSTRG.14910.1	-	88234878,88237805	88235663,88237922	0.714286
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	91185487	91185496	91185487	+	RAMPAGE_only	3	3	8	0.336169	2.521641	chr10	91179356	91186029	LINE|L1|L1PA13	-	chr10	91163011	91284331	PCGF5|NM_001257101.1	+	91163011,91222688,91240483,91248504,91248664,91251291,91261325,91264430,91271637,91278268	91163081,91222983,91240580,91248560,91248724,91251440,91261424,91264520,91271697,91284331	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	4129116	4129144	4129116	+	RAMPAGE_only	5	5	14	0.588295	3.392747	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.928571
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr22	38687040	38687063	38687060	-	RAMPAGE_only	3	4	12	0.504253	3.459432	chr22	38687038	38687336	SINE|Alu|AluSp	+	chr22	38685542	38700454	JOSD1|NM_014876.5	-	38685542,38688934,38689295,38699802	38688001,38689129,38689424,38700454	0.916667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	12249238	12249239	12249238	+	RAMPAGE_only	4	4	6	0.252126	2.584963	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.833333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	122064308	122064376	122064375	+	RAMPAGE_only	45	45	187	7.857939	6.404989	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.529412
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	80059918	80059933	80059918	+	High_confidence	94	100	271	11.387708	5.335954	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.985240
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	40815628	40815655	40815634	+	RAMPAGE_only	6	7	25	1.050527	4.349649	chr7	40810256	40816712	LINE|L1|L1PA16	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.760000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	108599611	108599627	108599611	+	High_confidence	4	4	13	0.546274	3.418296	chr10	108599565	108600535	LTR|ERV1|HERVH-int	+	chr10	108599642	108599989	MSTRG.5219.1	+	108599642	108599989	0.846154
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	32997349	32997350	32997349	-	High_confidence	8	8	8	0.336169	3.000000	chr9	32997347	32997748	LINE|L2|L2c	-	chr9	32972762	32997360	APTX|ENST00000479656.5	-	32972762,32974457,32984630,32985970,32987543,32988078,32989758,32997242	32973652,32974561,32984857,32986030,32987842,32988124,32989895,32997360	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	84171813	84171827	84171813	-	High_confidence	7	7	17	0.714358	3.625000	chr10	84171609	84171986	LTR|ERV1|Harlequin-int	-	chr10	84167227	84172076	HOST2|NR_134505.1	-	84167227,84171721	84168729,84172076	0.764706
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	15829094	15829095	15829094	+	High_confidence	155	159	185	7.773897	6.116559	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	0.956757
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	45522975	45522982	45522977	-	High_confidence	4	6	12	0.504253	2.792481	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45514506	45523047	PRDX1|ENST00000424390.1	-	45514506,45514872,45515653,45518937,45522777	45514637,45514995,45515807,45519054,45523047	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	105500651	105500689	105500688	+	High_confidence	5	5	17	0.714358	4.000000	chr9	105500002	105500744	LINE|L1|L1MCa	-	chr9	105500658	105552433	FSD1L|ENST00000374707.1	+	105500658,105506398,105508616,105512806,105534492,105535066,105539262,105546357	105500763,105506608,105508715,105512936,105534593,105535318,105539351,105552433	0.882353
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	86591746	86591756	86591746	-	RAMPAGE_only	7	8	13	0.546274	3.392747	chr11	86591579	86591928	LTR|ERVL-MaLR|THE1B	-	chr11	86446892	86671965	ME3|ENST00000530520.5	-	86446892,86448149,86449888,86450300,86465090,86487336,86497962,86508791,86556552,86559689,86671761	86447207,86448255,86450002,86450398,86465200,86487440,86498124,86508867,86556702,86559823,86671965	0.846154
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	81170402	81170420	81170402	-	High_confidence	3	4	15	0.630316	3.521641	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.733333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	143558019	143558020	143558019	+	High_confidence	24	28	28	1.176590	4.664498	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	180692008	180692009	180692008	+	High_confidence	23	24	28	1.176590	3.782122	chr2	180691204	180692425	LTR|ERV1|LTR12C	+	chr2	180692103	180916939	SCHLAP1|NR_104322.1	+	180692103,180724595,180725190,180823932,180827240,180899649,180916272	180692441,180724690,180725291,180824070,180827507,180899718,180916939	0.964286
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	151436727	151436745	151436727	-	High_confidence	1	2	7	0.294147	2.584963	chr6	151436689	151436932	LINE|CR1|L3	+	chr6	151423525	151436826	RMND1|ENST00000643550.1	-	151423525,151427481,151430137,151433154,151436419	151423631,151427582,151430177,151433230,151436826	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr21	29077467	29077499	29077486	+	High_confidence	7	7	29	1.218611	3.840403	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.724138
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	209786998	209787005	209786998	-	RAMPAGE_only	6	7	13	0.546274	3.546594	chr1	209786991	209787231	SINE|Alu|AluJo	+	chr1	209779207	209802041	MSTRG.3308.1	-	209779207,209788547,209789666,209790494,209792268,209793133,209795289,209796347,209801239,209801971	209787526,209788644,209789785,209790887,209792427,209793183,209795418,209796552,209801416,209802041	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	6918647	6918674	6918647	-	High_confidence	5	5	13	0.546274	3.188722	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6916850	6918663	RNF144A-AS1|ENST00000439208.1	-	6916850,6918280	6917224,6918663	0.769231
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	169966533	169966613	169966533	+	High_confidence	9	9	39	1.638821	4.477459	chr3	169966447	169966552	DNA|hAT-Charlie|MER5A	+	chr3	169966764	169998373	SEC62|ENST00000337002.8	+	169966764,169975607,169976945,169982706,169983160,169985804,169988239,169992593	169966858,169975716,169977051,169982911,169983253,169985865,169988359,169998373	0.974359
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	35263433	35263434	35263433	+	RAMPAGE_only	12	12	17	0.714358	3.572469	chr20	35263264	35263726	LINE|L2|L2b	+	chr20	35226735	35277001	MMP24|NM_006690.3	+	35226735,35246839,35251904,35254449,35263790,35267204,35269759,35271568,35274271	35226984,35246988,35252021,35254754,35263952,35267419,35269898,35271835,35277001	0.823529
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	135965718	135965765	135965723	+	High_confidence	49	61	248	10.421224	6.276754	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.987903
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	29924920	29924921	29924920	+	RAMPAGE_only	9	10	11	0.462232	2.921928	chr6	29924869	29924950	LINE|L2|L2	-	chr6	29926458	29929232	HLA-K|ENST00000430151.2	+	29926458,29926659,29927177,29928063,29928456,29929185	29926530,29926929,29927452,29928328,29928573,29929232	0.545455
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	98895975	98896023	98895975	-	High_confidence	3	3	13	0.546274	3.546594	chr3	98895952	98896064	DNA|hAT-Tip100|MamTip3	-	chr3	98825333	98895412	DCBLD2|ENST00000486004.1	-	98825333,98849460,98881539,98895229	98825366,98849598,98881767,98895412	0.846154
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	9140390	9140428	9140393	+	High_confidence	40	40	178	7.479749	5.937594	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	MSTRG.18191.2	+	9140396,9155924,9156611,9157979,9158825,9160113	9140592,9156041,9157394,9158075,9158908,9163408	0.893258
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	113117907	113117971	113117970	+	High_confidence	49	69	320	13.446740	6.036627	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.953125
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr21	33931146	33931147	33931146	+	High_confidence	5	5	7	0.294147	2.584963	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.714286
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	38811416	38811449	38811448	-	High_confidence	4	4	14	0.588295	3.521641	chr17	38811253	38811561	SINE|Alu|AluY	+	chr17	38802839	38810595	CWC25|ENST00000619462.4	-	38802839,38806296,38806764,38809701,38810275,38810467	38802861,38806395,38806976,38809765,38810400,38810595	0.571429
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr22	37849302	37849333	37849317	-	High_confidence	67	73	211	8.866444	5.745220	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.990521
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	693367	693391	693385	+	RAMPAGE_only	4	6	15	0.630316	2.985228	chr2	693114	693473	LTR|ERV1|MER57B1	+	chr2	680080	697371	AC092159.2|ENST00000435573.1	+	680080,696540,697146	680151,696670,697371	0.600000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	2757853	2757866	2757853	+	High_confidence	4	4	10	0.420211	2.947703	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.800000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	38881705	38881741	38881705	+	RAMPAGE_only	6	6	25	1.050527	4.183465	chr5	38881676	38881753	SINE|tRNA-Deu|AmnSINE2	+	chr5	38845998	38935641	OSMR|ENST00000274276.7	+	38845998,38869031,38876200,38881592,38883826,38885348,38886038,38903881,38904352,38917545,38918839,38921614,38923149,38924421,38925203,38931882,38932462,38932871	38846387,38869117,38876373,38881764,38884111,38885484,38886190,38904024,38904503,38917622,38919062,38921794,38923254,38924595,38925371,38931964,38932535,38935641	0.960000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	149632765	149632814	149632765	-	RAMPAGE_only	3	3	11	0.462232	2.846439	chr6	149632576	149632725	LINE|L1|L1ME4b	-	chr6	149594872	149638592	KATNA1|ENST00000335647.9	-	149594872,149597062,149597506,149598223,149601593,149603267,149604660,149623102,149632758,149638385	149595234,149597189,149597641,149598350,149601752,149603373,149604782,149623283,149632916,149638592	0.909091
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	3795750	3795789	3795788	+	High_confidence	16	19	108	4.538275	5.555178	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.990741
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	9422943	9422946	9422943	-	High_confidence	3	3	7	0.294147	2.521641	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9412268	9423087	ITGB1BP1|ENST00000467606.5	-	9412268,9414177,9418625,9422965	9412405,9414256,9418732,9423087	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	20674497	20674498	20674497	+	High_confidence	213	214	229	9.622824	4.682956	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.886463
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	102947730	102947755	102947730	-	RAMPAGE_only	3	3	14	0.588295	3.238901	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.785714
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr22	36366326	36366358	36366326	-	RAMPAGE_only	8	8	32	1.344674	4.538910	chr22	36366216	36366277	DNA|hAT-Charlie|Charlie9	-	chr22	36325032	36365112	MYH9|ENST00000401701.1	-	36325032,36326567,36327460,36341369,36348903,36365045	36325123,36326661,36327488,36341526,36349255,36365112	0.906250
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	30722097	30722102	30722097	+	High_confidence	2	2	7	0.294147	2.807355	chr6	30721886	30722155	SINE|Alu|AluJr	+	chr6	30721698	30725426	TUBB|ENST00000396384.1	+	30721698,30722536,30722917,30723339	30722214,30722645,30723028,30725426	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	82642614	82642625	82642624	+	High_confidence	7	10	22	0.924463	4.186704	chr14	82642501	82642782	LTR|ERV1|MER61B	+	chr14	82642631	82706825	LINC02301|ENST00000555150.5	+	82642631,82650923,82685379,82687313,82694789,82706700	82642674,82650996,82685431,82687369,82694868,82706825	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	12556515	12556556	12556539	+	RAMPAGE_only	3	3	14	0.588295	3.546594	chr7	12555201	12556721	LTR|ERV1|LTR12C	-	chr7	12570576	12653104	SCIN|ENST00000341757.9	+	12570576,12578063,12581059,12604513,12622800,12625009,12625761,12626583,12629100,12636044,12640346,12644583,12649466,12651840,12652587	12570985,12578218,12581221,12604663,12622893,12625142,12625850,12626799,12629222,12636135,12640517,12644705,12649544,12651901,12653104	0.714286
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	19344364	19344405	19344404	-	RAMPAGE_only	5	5	18	0.756379	3.219528	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.944444
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	51153837	51153859	51153837	+	High_confidence	6	7	12	0.504253	3.027169	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51153664	51161898	NME1|ENST00000013034.3	+	51153664,51154224,51155650,51159979,51161159,51161727	51153724,51154444,51155780,51160081,51161272,51161898	0.500000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	18794054	18794086	18794077	+	High_confidence	8	8	33	1.386695	4.001777	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	45524139	45524142	45524141	+	RAMPAGE_only	3	5	7	0.294147	2.807355	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45507505	45526942	VASP|ENST00000586014.5	+	45507505,45517662,45517928,45522522,45522717,45523643,45523840,45524096,45524569,45525945,45526139	45507776,45517834,45517963,45522581,45522818,45523695,45523877,45524142,45524660,45526003,45526942	0.571429
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	95713494	95713522	95713521	+	RAMPAGE_only	3	3	10	0.420211	2.921928	chr5	95713280	95713670	LTR|ERVL-MaLR|MSTA	+	chr5	95717632	95756093	RHOBTB3|ENST00000504949.1	+	95717632,95731858,95736888,95748332,95752238,95755395	95717765,95732084,95737075,95748487,95752350,95756093	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	10710653	10710654	10710653	-	High_confidence	72	72	73	3.067538	4.372924	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.780822
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrX	2964553	2964563	2964562	-	High_confidence	4	4	11	0.462232	2.846439	chrX	2964489	2964607	SINE|Alu|AluJb	-	chrX	2934631	2964453	ARSE|NM_001282628.1	-	2934631,2936741,2938094,2943064,2945997,2949303,2953142,2955415,2958273,2959602,2960377,2964223	2935190,2936863,2938257,2943199,2946134,2949727,2953265,2955537,2958435,2959888,2960420,2964453	0.727273
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	112936000	112936022	112936000	-	High_confidence	35	39	103	4.328170	5.286833	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	0.961165
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	90467579	90467583	90467579	+	RAMPAGE_only	3	4	8	0.336169	2.750000	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.750000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr22	30971746	30971763	30971762	+	High_confidence	6	7	12	0.504253	3.459432	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.916667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	127451200	127451201	127451200	-	High_confidence	8	8	9	0.378190	2.750000	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.777778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	134613031	134613061	134613031	-	High_confidence	3	3	7	0.294147	2.807355	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.714286
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	77088107	77088111	77088108	+	High_confidence	8	12	25	1.050527	4.213661	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088058	77151386	ZBED3-AS1|ENST00000646705.1	+	77088058,77098654,77100235,77118319,77151223	77088472,77098747,77100391,77118521,77151386	0.520000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	407669	407670	407669	+	High_confidence	6	7	7	0.294147	2.807355	chr20	407650	407824	SINE|MIR|MIRb	+	chr20	408049	410764	RBCK1|NM_001323960.1	+	408049,409880,410411	408779,410025,410764	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	123061128	123061297	123061296	-	High_confidence	36	36	457	19.203626	6.333315	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.943107
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	101466869	101466902	101466869	-	RAMPAGE_only	3	3	10	0.420211	2.725481	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.900000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	114624940	114625034	114625006	-	High_confidence	74	79	488	20.506279	5.909368	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114338652	114624945	MSTRG.26208.11	-	114338652,114350273,114380216,114380776,114389004,114500351,114624876	114339426,114351878,114380404,114380940,114389105,114500391,114624945	0.889344
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	41871737	41871820	41871819	-	RAMPAGE_only	10	11	52	2.185095	5.065448	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.788462
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	50185900	50185903	50185900	+	RAMPAGE_only	7	7	12	0.504253	3.459432	chr3	50185763	50185908	SINE|MIR|MIR1_Amn	-	chr3	50159018	50189073	SEMA3F|ENST00000434342.5	+	50159018,50159574,50173792,50174051,50174230,50176767,50182283,50182643,50182903,50183185,50183419,50184591,50185442,50185665,50185888,50186280,50186612,50187704	50159288,50159734,50173953,50174114,50174350,50176861,50182403,50182783,50183018,50183255,50183564,50184814,50185531,50185707,50186046,50186348,50186746,50189073	0.916667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	58455287	58455324	58455289	-	RAMPAGE_only	3	4	20	0.840421	3.826875	chr5	58455099	58455251	DNA|hAT-Charlie|MER5A	-	chr5	58453981	58460139	PLK2|NM_006622.3	-	58453981,58454910,58455284,58455538,58456025,58456491,58456944,58457180,58457487,58458083,58458398,58458724,58458984,58459689	58454774,58455021,58455414,58455779,58456155,58456589,58457092,58457379,58457583,58458171,58458528,58458841,58459092,58460139	0.950000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	78620056	78620058	78620057	+	High_confidence	12	23	23	0.966484	4.523562	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.956522
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	70935144	70935167	70935166	-	RAMPAGE_only	9	9	23	0.966484	4.297079	chr11	70935039	70935274	DNA|TcMar-Tigger|Tigger7	+	chr11	70798442	70951071	SHANK2|ENST00000460048.1	-	70798442,70807001,70820363,70896500,70951005	70798556,70807171,70820682,70896567,70951071	0.695652
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	96797177	96797194	96797182	-	RAMPAGE_only	4	4	10	0.420211	3.121928	chr5	96797097	96797154	DNA|hAT-Blackjack|MER81	-	chr5	96790584	96793671	ERAP1|ENST00000503311.1	-	96790584,96792060,96793399	96790643,96792192,96793671	0.600000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	153549132	153549134	153549132	-	High_confidence	5	8	12	0.504253	3.277613	chr1	153549066	153549188	SINE|MIR|MIRb	+	chr1	153547512	153549126	S100A3|ENST00000368712.1	-	153547512,153548344,153549027	153547846,153548490,153549126	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	18706991	18707033	18707032	-	High_confidence	10	14	37	1.554779	4.337435	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18705417	18706129	IGSF22|ENST00000510673.1	-	18705417,18705816	18705617,18706129	0.540541
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	39319808	39319847	39319808	-	RAMPAGE_only	30	53	104	4.370191	5.761468	chr4	39319668	39319780	DNA|TcMar-Tigger|MER44B	-	chr4	39303089	39317013	RFC1|ENST00000504554.1	-	39303089,39304813,39311444,39312751,39316914	39303151,39304928,39311549,39312931,39317013	0.625000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	29264585	29264610	29264585	-	High_confidence	14	15	49	2.059032	5.119513	chr16	29264339	29264630	LINE|L1|L1MC1	-	chr16	29262272	29264479	AC009093.4|ENST00000567984.1	-	29262272,29264329	29262683,29264479	0.959184
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	36805376	36805393	36805392	-	RAMPAGE_only	9	9	23	0.966484	3.823068	chr18	36805277	36805349	LINE|L2|L2b	-	chr18	36796071	36828963	TPGS2|ENST00000593035.5	-	36796071,36798448,36800197,36805373,36807846,36818893,36828682	36797050,36798609,36800311,36805397,36807934,36818973,36828963	0.869565
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	109053951	109053957	109053956	-	High_confidence	8	8	15	0.630316	3.324863	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.800000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	39685045	39685046	39685045	+	High_confidence	7	8	11	0.462232	2.721928	chr8	39684703	39685147	LTR|ERV1|LTR2	+	chr8	39685129	39730062	ADAM18|ENST00000523755.5	+	39685129,39692599,39706789,39723747,39729897	39685412,39692680,39706904,39723907,39730062	0.909091
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	27350389	27350390	27350389	-	RAMPAGE_only	9	9	10	0.420211	2.947703	chr2	27350219	27350401	DNA|hAT-Charlie|MER5A	+	chr2	27325848	27356492	GTF3C2|ENST00000359541.6	-	27325848,27327176,27328036,27328467,27328843,27329120,27329378,27333654,27333973,27335597,27335916,27336197,27337243,27337480,27337925,27341947,27342825,27343307,27356086	27326893,27327284,27328189,27328596,27328931,27329282,27329523,27333784,27333999,27335706,27336028,27336425,27337342,27337558,27338020,27342233,27343147,27343578,27356492	0.900000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	24151496	24151543	24151542	+	High_confidence	30	34	152	6.387202	5.629115	chr1	24151159	24151642	LTR|ERV1|LTR10D	-	chr1	24151513	24160427	MSTRG.623.1	+	24151513,24155011,24157254	24151739,24155192,24160427	0.967105
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	122745538	122745581	122745575	-	RAMPAGE_only	19	29	117	4.916464	3.633579	chr3	122745410	122746106	DNA|TcMar-Tigger|MER44C	+	chr3	122740002	122741776	HSPBAP1|ENST00000471534.1	-	122740002,122741002	122740875,122741776	0.957265
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	118139096	118139097	118139096	+	High_confidence	7	7	7	0.294147	2.521641	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.857143
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	76773076	76773113	76773076	+	High_confidence	5	9	16	0.672337	3.506891	chr17	76772816	76773304	LINE|L1|L1MEc	-	chr17	76773096	76778338	MFSD11|ENST00000590070.1	+	76773096,76774996,76776405,76778187	76773351,76775171,76776541,76778338	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	90258074	90258080	90258079	+	RAMPAGE_only	13	13	25	1.050527	4.053661	chr14	90258077	90258330	SINE|MIR|MIRb	+	chr14	90256577	90272550	PSMC1|ENST00000543772.2	+	90256577,90259159,90263317,90263661,90264040,90265069,90268223,90269396,90270197,90272272	90256600,90259213,90263442,90263847,90264169,90265166,90268413,90269548,90270352,90272550	0.760000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	47227193	47227226	47227193	-	High_confidence	5	5	12	0.504253	2.751629	chr19	47227045	47227213	SINE|MIR|MIR1_Amn	-	chr19	47221644	47227189	BBC3|ENST00000598636.1	-	47221644,47226563	47221918,47227189	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	149963618	149963633	149963632	+	High_confidence	5	5	9	0.378190	2.725481	chr6	149963662	149963755	SINE|MIR|MIR1_Amn	+	chr6	149963973	149973713	ULBP1|NM_025218.3	+	149963973,149968606,149969084,149970015,149971368	149964134,149968870,149969360,149970147,149973713	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr13	30735067	30735080	30735067	+	High_confidence	2	2	7	0.294147	2.584963	chr13	30735028	30735191	SINE|Alu|AluJo	-	chr13	30735053	30764426	MSTRG.9704.3	+	30735053,30735550,30744059,30752051,30755943,30763943	30735390,30735675,30744159,30752122,30756025,30764426	0.571429
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	77532106	77532107	77532106	+	High_confidence	30	31	44	1.848927	4.568084	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.931818
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr21	39657322	39657332	39657326	+	High_confidence	6	6	16	0.672337	3.323231	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657326	39662889	B3GALT5|ENST00000380618.5	+	39657326,39659752,39660559	39657599,39659912,39662889	0.937500
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	2899500	2899501	2899500	-	RAMPAGE_only	4	4	6	0.252126	2.584963	chr11	2899225	2899531	LINE|L2|L2b	+	chr11	2888096	2903490	SLC22A18AS|ENST00000455942.3	-	2888096,2902583,2903458	2888635,2902709,2903490	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	109498776	109498802	109498792	-	High_confidence	7	7	22	0.924463	4.201841	chr9	109498741	109499030	LINE|L2|L2a	+	chr9	109375693	109498313	PTPN3|ENST00000262539.7	-	109375693,109381651,109382301,109383306,109389232,109391137,109391470,109404447,109406461,109408320,109409998,109410228,109420423,109422717,109426949,109428620,109433072,109436882,109438113,109445239,109448810,109454495,109457172,109457291,109463296,109498218	109379633,109381787,109382447,109383551,109389379,109391199,109391561,109404608,109406618,109408377,109410076,109410415,109420600,109422852,109427122,109428684,109433161,109436970,109438234,109445292,109448855,109454574,109457215,109457399,109463451,109498313	0.863636
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr10	27509885	27509928	27509927	+	RAMPAGE_only	4	4	10	0.420211	2.921928	chr10	27509948	27510212	LINE|L2|L2c	+	chr10	27504376	27538489	RAB18|ENST00000465772.5	+	27504376,27509874,27526827,27532506,27533734,27537875	27504437,27509930,27526889,27532579,27533853,27538489	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chrX	107155879	107155965	107155928	-	RAMPAGE_only	2	3	16	0.672337	3.750000	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.562500
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	27647188	27647209	27647193	-	High_confidence	4	6	18	0.756379	3.852169	chr7	27646996	27647430	DNA|TcMar-Tigger|MER44B	-	chr7	27531253	27647756	HIBADH|ENST00000425715.1	-	27531253,27538340,27542966,27629370,27632335,27647672	27531348,27538417,27543100,27629492,27632441,27647756	0.666667
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	65430775	65430816	65430775	+	RAMPAGE_only	19	22	36	1.512758	4.343289	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.972222
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr20	57240701	57240735	57240734	-	RAMPAGE_only	5	5	9	0.378190	2.947703	chr20	57240578	57240929	LTR|ERVL-MaLR|THE1A	-	chr20	57171038	57224685	BMP7|ENST00000460817.5	-	57171038,57173199,57174930,57183721,57202474,57224574	57171108,57173310,57175007,57183919,57202623,57224685	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	183163620	183163621	183163620	-	High_confidence	7	8	10	0.420211	3.169925	chr3	183163266	183163587	SINE|Alu|AluSc5	-	chr3	183153900	183163839	LAMP3|ENST00000476015.1	-	183153900,183162606,183163619	183154391,183162730,183163839	0.900000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	32479860	32479861	32479860	+	High_confidence	4	4	7	0.294147	2.807355	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.571429
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr6	127330926	127330966	127330926	-	High_confidence	2	2	9	0.378190	2.641604	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.777778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	32677510	32677540	32677539	+	High_confidence	18	19	58	2.437222	5.114543	chr15	32677294	32677614	LTR?|LTR?|MamRep605	+	chr15	32677559	32696626	SCG5|ENST00000498069.5	+	32677559,32679765,32684559,32691709,32696513	32677744,32679915,32684669,32691763,32696626	0.706897
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr12	25973754	25973755	25973754	+	High_confidence	25	28	36	1.512758	4.822001	chr12	25973582	25973939	LTR|ERVL-MaLR|MLT1A0	+	chr12	25973754	26072874	RASSF8|NM_001164747.1	+	25973754,25995036,26055278,26064497,26067568,26068696	25973887,25995130,26055446,26065387,26067713,26072874	0.861111
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	153967484	153967512	153967486	+	High_confidence	14	23	66	2.773390	5.249065	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.803030
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	152850647	152850668	152850664	+	High_confidence	3	5	17	0.714358	3.625000	chr4	152850580	152850736	DNA|hAT-Charlie|MER5A1	+	chr4	152850642	152881173	ARFIP1|ENST00000511289.5	+	152850642,152863605,152870752,152872451,152880962	152850706,152863714,152870848,152872564,152881173	0.529412
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	120596723	120596760	120596753	-	RAMPAGE_only	6	6	13	0.546274	3.334679	chr3	120596706	120596936	SINE|MIR|MIR	+	chr3	120392292	120451253	FSTL1|ENST00000295633.7	-	120392292,120399882,120402807,120403241,120404852,120409531,120410951,120411853,120415922,120450683,120450896	120396996,120399959,120402918,120403354,120404971,120409662,120410984,120411983,120416027,120450746,120451253	0.769231
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	74650299	74650303	74650302	+	High_confidence	6	9	18	0.756379	3.969816	chr7	74650210	74650770	DNA|TcMar-Tigger|Tigger7	+	chr7	74650250	74650797	MSTRG.33890.1	+	74650250	74650797	0.611111
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	2205756	2205851	2205823	+	High_confidence	70	74	855	35.928009	5.760077	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.981287
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr11	119046449	119046464	119046463	-	RAMPAGE_only	5	6	12	0.504253	2.751629	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr15	32866714	32866718	32866714	-	RAMPAGE_only	4	4	11	0.462232	2.921928	chr15	32866613	32867104	LINE|L2|L2b	+	chr15	32765545	33067884	FMN1|ENST00000334528.13	-	32765545,32776834,32798803,32804280,32857014,32888171,32898833,32899978,32901910,32908489,32910473,32926173,32964106,32968713,33008013,33064956,33066510	32774354,32776919,32798953,32804332,32857107,32888292,32898893,32900125,32902040,32908578,32910535,32926261,32964257,32969477,33008075,33065074,33067884	0.727273
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr5	181247598	181247599	181247598	-	High_confidence	6	6	8	0.336169	2.500000	chr5	181247404	181247700	SINE|Alu|AluY	+	chr5	181238119	181247576	RACK1|ENST00000510199.5	-	181238119,181239066,181239486,181241491,181242173,181247123	181238239,181239177,181239582,181241639,181242345,181247576	1.000000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	41757420	41757487	41757429	-	RAMPAGE_only	9	14	58	2.437222	4.665995	chr17	41757254	41757383	DNA|hAT-Tip100|MER91B	-	chr17	41754603	41785155	JUP|ENST00000393930.5	-	41754603,41755729,41756174,41757414,41757633,41758398,41758714,41762982,41764712,41764922,41767378,41768968,41769417,41771646,41784946	41755432,41755895,41756214,41757536,41757784,41758518,41758870,41763321,41764816,41765067,41767580,41769207,41769677,41771862,41785155	0.931034
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	20658568	20658624	20658607	+	High_confidence	10	17	95	3.992001	5.333822	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20770112	MSTRG.37099.2	+	20658308,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.884211
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr2	96638022	96638060	96638059	-	High_confidence	3	5	13	0.546274	3.584963	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96631337	96638060	KANSL3|ENST00000475820.1	-	96631337,96636920,96637948	96631543,96637185,96638060	0.769231
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr9	93448376	93448377	93448376	-	RAMPAGE_only	8	9	9	0.378190	3.000000	chr9	93448211	93448518	SINE|Alu|AluSz	+	chr9	93446923	93451208	FAM120AOS|ENST00000483056.5	-	93446923,93448368,93450478,93450944	93447697,93448489,93450599,93451208	0.777778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	22562050	22562071	22562070	+	RAMPAGE_only	6	6	18	0.756379	3.461320	chr7	22561901	22562080	DNA|hAT-Charlie|MER5A	+	chr7	22563336	22573996	AC002480.1|ENST00000435127.1	+	22563336,22564965,22571774,22572084	22563430,22565152,22572013,22573996	0.555556
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	209900922	209900923	209900922	+	RAMPAGE_only	284	338	345	14.497267	6.337735	chr1	209900724	209901095	LTR|ERVL|LTR16	+	chr1	209938173	210164286	SYT14|ENST00000537238.5	+	209938173,209952708,209953054,210013632,210021038,210094321,210100011,210155720,210160728	209938277,209952756,209953259,210013797,210021254,210094593,210100461,210155910,210164286	0.872464
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr3	134485443	134485489	134485443	-	High_confidence	17	19	103	4.328170	5.834572	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.932039
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr14	105024975	105025029	105024996	-	RAMPAGE_only	4	4	17	0.714358	3.572469	chr14	105024875	105025057	LTR|ERVL-MaLR|MLT1H	-	chr14	105009572	105021148	CDCA4|ENST00000336219.3	-	105009572,105020998	105011935,105021148	0.882353
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	56272340	56272341	56272340	+	High_confidence	5	5	8	0.336169	2.521641	chr4	56272344	56272407	LINE|CR1|L3	+	chr4	56272403	56328092	KIAA1211|ENST00000541073.5	+	56272403,56298213,56301225,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56272492,56298349,56301247,56307699,56310734,56313379,56316689,56323567,56324266,56328092	0.875000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr7	100082573	100082580	100082573	-	High_confidence	12	12	39	1.638821	4.362325	chr7	100082301	100082600	SINE|Alu|AluSx1	+	chr7	100069970	100082548	ZNF3|NM_001278287.1	-	100069970,100075134,100075541,100077302,100079535,100082300	100072212,100075261,100075630,100077433,100079572,100082548	0.846154
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr18	39800271	39800294	39800293	-	High_confidence	10	10	20	0.840421	3.787144	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.800000
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr17	60887005	60887026	60887025	+	High_confidence	10	11	17	0.714358	3.852169	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.647059
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr8	61578141	61578142	61578141	+	High_confidence	1047	1050	1060	44.542327	5.539316	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578151	61579668	MSTRG.35814.1	+	61578151,61578648,61578986	61578208,61578938,61579668	0.887736
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr16	70590308	70590329	70590319	+	RAMPAGE_only	4	4	18	0.756379	3.503258	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.888889
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	1721622	1721638	1721637	-	High_confidence	3	4	6	0.252126	2.584963	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.833333
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr19	18544035	18544063	18544035	-	High_confidence	4	4	9	0.378190	2.750000	chr19	18544020	18544075	SINE|MIR|MIR3	-	chr19	18538215	18544077	FKBP8|ENST00000597611.7	-	18538215,18539370,18539550,18541678,18543908	18538436,18539459,18539720,18541995,18544077	0.777778
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr1	15785330	15785353	15785330	+	RAMPAGE_only	4	4	16	0.672337	2.732915	chr1	15785352	15785645	SINE|Alu|AluSz6	+	chr1	15764963	15786589	FBLIM1|NM_001024216.1	+	15764963,15770408,15774617,15777169,15784547	15765233,15770578,15774796,15777287,15786589	0.937500
kidney_epithelial_cell_male_fetal_22_weeks_and_male_newborn	chr4	74114559	74114560	74114559	+	High_confidence	11	11	13	0.546274	3.546594	chr4	74114563	74114677	SINE|MIR|MIR	+	chr4	74114173	74242210	MTHFD2L|ENST00000429519.5	+	74114173,74114487,74125439,74160054,74174505,74175280,74199793,74201262,74225301,74241566	74114383,74114657,74125517,74160088,74174690,74175403,74199946,74201370,74225394,74242210	0.615385
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	27445105	27445120	27445119	-	RAMPAGE_only	7	8	15	0.411585	3.807355	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.933333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	92702224	92702225	92702224	+	High_confidence	9	9	13	0.356707	3.251629	chr12	92702201	92702332	DNA|hAT-Charlie|MER5A	-	chr12	92702842	92708549	C12orf74|NM_001178097.2	+	92702842,92706470	92703132,92708549	0.923077
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	55618850	55618903	55618850	-	High_confidence	6	6	18	0.493902	3.969816	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	120810820	120810828	120810827	-	RAMPAGE_only	3	5	8	0.219512	2.807355	chr12	120810699	120810790	SINE|tRNA|LFSINE_Vert	-	chr12	120782689	120835657	SPPL3|ENST00000543181.5	-	120782689,120783673,120784473,120791468,120810808,120835438	120782767,120783752,120784593,120791557,120810886,120835657	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	78653452	78653459	78653458	+	RAMPAGE_only	4	4	9	0.246951	3.169925	chrX	78653478	78653523	LINE|L2|L2c	+	chrX	78747708	78756404	LPAR4|ENST00000614823.4	+	78747708,78750173,78750729,78751209,78754790	78748034,78750223,78750792,78751311,78756404	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	112956793	112956813	112956793	+	High_confidence	6	6	12	0.329268	3.251629	chr1	112956705	112956908	SINE|MIR|MIR	+	chr1	112956823	113047051	SLC16A1-AS1|ENST00000627431.2	+	112956823,112960476,112998929,113008129,113033674,113046785	112956956,112960575,112999109,113008360,113033838,113047051	0.583333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	195689332	195689378	195689360	+	High_confidence	4	4	13	0.356707	3.584963	chr3	195689376	195689522	LINE|L1|L1MC5a	+	chr3	195689350	195708807	MUC20-OT1|ENST00000625776.2	+	195689350,195696360,195699029,195701379,195708133,195708746	195689438,195696589,195699207,195701432,195708435,195708807	0.615385
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	152476204	152476233	152476232	-	RAMPAGE_only	4	4	10	0.274390	2.921928	chr4	152475458	152476664	LINE|L1|L1MD	+	chr4	152322874	152471175	MSTRG.19956.10	-	152322874,152324183,152326005,152328207,152329671,152330731,152332595,152337801,152346929,152350041,152411302,152412479,152469940	152323149,152324394,152326231,152328389,152329785,152330868,152332719,152337936,152347071,152350124,152411872,152412529,152471175	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	128859777	128859778	128859777	-	High_confidence	548	552	557	15.283531	6.649947	chr3	128859679	128860156	LTR|ERV1|LTR4	-	chr3	128854564	128860526	MSTRG.18513.1	-	128854564,128859454	128855914,128860526	0.960503
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	118356833	118356834	118356833	-	RAMPAGE_only	6	6	9	0.246951	3.000000	chr8	118356600	118357114	LINE|L2|L2b	+	chr8	118327673	118621975	SAMD12|ENST00000649198.1	-	118327673,118379559,118439831,118580714,118621938	118327966,118379700,118439961,118580893,118621975	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	94581662	94581676	94581675	+	High_confidence	3	3	9	0.246951	2.750000	chr14	94581654	94581760	SINE|MIR|MIRb	+	chr14	94581614	94593115	SERPINA5|ENST00000554276.1	+	94581614,94587345,94590040,94590748,94592056	94581710,94587981,94590311,94590896,94593115	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	7147267	7147288	7147267	+	High_confidence	5	5	9	0.246951	3.169925	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	110642789	110642790	110642789	-	High_confidence	46	46	46	1.262195	4.958345	chr2	110642693	110642986	SINE|Alu|AluJr	-	chr2	110641325	110642790	BUB1|ENST00000478175.1	-	110641325,110641641,110642118,110642448	110641464,110641803,110642234,110642790	0.913043
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	43361161	43361210	43361209	+	RAMPAGE_only	8	10	32	0.878048	4.140320	chr1	43361240	43361490	LINE|L2|L2	+	chr1	43359012	43363203	CDC20|ENST00000372462.1	+	43359012,43359489,43359724,43359968,43360192,43360498,43360732,43361119,43362194,43362950	43359396,43359638,43359821,43360097,43360389,43360593,43360961,43361245,43362312,43363203	0.968750
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	82095274	82095305	82095304	-	RAMPAGE_only	2	2	9	0.246951	3.000000	chr6	82095126	82095506	LTR|ERVL-MaLR|THE1C	-	chr6	81845184	81933480	LINC02542|ENST00000418567.1	-	81845184,81928856,81933428	81845909,81928901,81933480	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	26956533	26956554	26956553	-	High_confidence	4	5	9	0.246951	3.000000	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	131635532	131635553	131635532	+	RAMPAGE_only	27	28	93	2.551828	5.720446	chr6	131635429	131635627	LTR|ERV1|PABL_B	+	chr6	131637234	131747410	ENPP3|NM_005021.4	+	131637234,131641454,131650026,131652541,131652830,131658322,131671247,131674161,131675079,131676735,131677867,131683053,131685363,131685875,131693496,131718671,131720291,131722226,131724039,131726045,131733587,131737354,131738030,131740223,131746785	131637462,131641530,131650149,131652667,131652891,131658420,131671327,131674281,131675189,131676801,131677940,131683162,131685495,131685907,131693624,131718738,131720379,131722405,131724091,131726200,131733723,131737432,131738163,131740380,131747410	0.903226
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	30999457	30999520	30999519	-	High_confidence	12	13	57	1.564024	5.472446	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.561404
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	39810023	39810077	39810033	-	High_confidence	20	20	68	1.865853	4.664178	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.852941
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	37811156	37811225	37811224	+	RAMPAGE_only	42	42	128	3.512194	5.092565	chrX	37811068	37811312	SINE|MIR|MIRc	-	chrX	37780016	37813461	CYBB|NM_000397.3	+	37780016,37782087,37783489,37791974,37793664,37795950,37798954,37801255,37803876,37805005,37806386,37809566,37810790	37780122,37782183,37783600,37792059,37793810,37796141,37799084,37801348,37804130,37805168,37806533,37809691,37813461	0.984375
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	50843101	50843112	50843101	-	RAMPAGE_only	4	4	15	0.411585	3.456565	chr18	50842925	50843332	LTR|ERVL|MLT2D	-	chr18	50798376	50825402	MRO|ENST00000428869.6	-	50798376,50800035,50801348,50805153,50806703,50809301,50816123,50819580,50825308	50799390,50800143,50801504,50805336,50806850,50809404,50816162,50819702,50825402	0.866667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	67677699	67677914	67677855	-	RAMPAGE_only	84	85	529	14.515239	6.623013	chr14	67677779	67677861	SINE|Alu|AluSx	-	chr14	67677392	67692851	RDH11|ENST00000553578.5	-	67677392,67685014,67686083,67690211	67678423,67685204,67686257,67692851	0.877127
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	99893471	99893484	99893471	-	High_confidence	5	5	21	0.576219	3.286629	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.904762
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	3110938	3110949	3110939	+	RAMPAGE_only	4	5	9	0.246951	3.000000	chr12	3110987	3111077	SINE|MIR|MIR3	+	chr12	3077376	3286558	TSPAN9|ENST00000011898.9	+	3077376,3083652,3201176,3278420,3278991,3280381,3281197,3281733,3283044	3077453,3083719,3201256,3278612,3279066,3280483,3281329,3281817,3286558	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	52786634	52786660	52786644	+	High_confidence	345	363	892	24.475601	6.932816	chr3	52786644	52786700	SINE|MIR|MIRc	-	chr3	52786944	52789723	ITIH1|ENST00000484844.2	+	52786944,52787187,52787591,52788028,52788231,52789652	52787099,52787202,52787612,52788066,52788345,52789723	0.784753
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	36807846	36807896	36807865	-	High_confidence	3	4	15	0.411585	3.664498	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.533333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	15404901	15404904	15404901	-	RAMPAGE_only	7	8	22	0.603658	3.788755	chrX	15404835	15405042	SINE|tRNA-RTE|MamSINE1	+	chrX	15384798	15407653	PIR|ENST00000492432.5	-	15384798,15390184,15397448,15407505	15385116,15390251,15397531,15407653	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31121337	31121347	31121337	-	RAMPAGE_only	15	17	26	0.713414	3.573661	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.961538
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	50763491	50763522	50763521	+	High_confidence	2	2	6	0.164634	2.584963	chr12	50763350	50763657	SINE|Alu|AluJo	+	chr12	50763709	50814192	ATF1|ENST00000552510.5	+	50763709,50780139,50795908,50809455,50814009	50763741,50780238,50796009,50809589,50814192	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	34244692	34244699	34244698	-	High_confidence	6	6	12	0.329268	3.095795	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244796	MSTRG.20274.4	-	34175821,34179012,34182679,34200820,34218294,34239374,34244615	34175957,34179097,34182867,34200921,34218450,34239448,34244796	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	190615218	190615228	190615220	+	High_confidence	2	3	7	0.192073	2.584963	chr3	190615239	190615307	DNA|TcMar-Tigger|Tigger16b	+	chr3	190615307	190651512	MSTRG.19004.18	+	190615307,190620274,190623343,190627322,190629349,190644247,190645698,190648337	190615354,190620440,190623415,190627449,190629498,190644397,190645842,190651512	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	37893824	37893831	37893830	-	RAMPAGE_only	10	10	16	0.439024	3.202820	chr1	37893462	37893926	LINE|L2|L2c	+	chr1	37885508	37888344	INPP5B|ENST00000467066.1	-	37885508,37886887,37887350,37888242	37885825,37887004,37887465,37888344	0.812500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	89486651	89486670	89486651	-	RAMPAGE_only	8	8	18	0.493902	3.572431	chr14	89486513	89486649	SINE|5S-Deu-L2|AmnSINE1	-	chr14	89161384	89417112	FOXN3|ENST00000557258.5	-	89161384,89180700,89280949,89350671,89411933,89416870	89162969,89180806,89281014,89350808,89412490,89417112	0.944444
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65434263	65434403	65434263	+	RAMPAGE_only	5	5	59	1.618902	5.171216	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422799	65445488	MSTRG.4447.4	+	65422799,65423294,65437240,65444287,65445449	65423212,65437184,65444263,65445407,65445488	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	167472952	167472953	167472952	-	High_confidence	6	6	8	0.219512	3.000000	chr6	167472650	167472987	LTR|ERVL-MaLR|THE1B	-	chr6	167459257	167472790	LOC105378127|NR_134591.1	-	167459257,167462508,167463443,167472733	167459519,167462672,167463591,167472790	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	79492406	79492410	79492409	+	High_confidence	15	15	33	0.905487	4.354852	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492415	79576460	LINC00989|ENST00000508174.5	+	79492415,79493151,79513784,79575140	79492623,79493585,79513902,79576460	0.848485
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	86938472	86938485	86938474	-	RAMPAGE_only	5	10	19	0.521341	3.826875	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86892213	86922104	AP001528.2|ENST00000528660.1	-	86892213,86896412,86921235	86892372,86896540,86922104	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	136625304	136625313	136625304	-	RAMPAGE_only	3	4	13	0.356707	3.251629	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.846154
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	73107587	73107588	73107587	+	RAMPAGE_only	5	7	7	0.192073	2.807355	chr4	73107340	73108012	LINE|L2|L2a	-	chr4	73397113	73421193	MSTRG.19514.1	+	73397113,73404368,73405115,73406628,73408593,73409354,73410311,73411995,73413419,73415034,73416255,73417530,73418087,73419506,73420253,73421091	73397160,73404406,73405173,73406761,73408805,73409487,73410409,73412125,73413634,73415167,73416353,73417669,73418311,73419639,73420321,73421193	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	11344698	11344703	11344698	+	High_confidence	2	2	7	0.192073	2.521641	chr19	11344711	11344763	DNA|hAT-Tip100|MER91A	+	chr19	11344694	11346466	CCDC159|ENST00000587100.1	+	11344694,11345179,11345961	11344755,11345381,11346466	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	43307777	43307807	43307777	-	RAMPAGE_only	7	7	23	0.631097	4.106603	chr5	43307757	43307827	SINE|tRNA|LFSINE_Vert	+	chr5	43287469	43313224	HMGCS1|NM_001324219.1	-	43287469,43292473,43292847,43294055,43294690,43295751,43297001,43298008,43298517,43313021	43291220,43292637,43292973,43294162,43294861,43295917,43297166,43298134,43298975,43313224	0.826087
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	6469605	6469619	6469618	-	High_confidence	3	4	10	0.274390	2.725481	chr7	6469259	6469573	SINE|Alu|AluSx3	-	chr7	6461761	6470406	KDELR2|ENST00000454368.2	-	6461761,6466070,6469595	6463175,6466323,6470406	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	70985316	70985471	70985316	+	RAMPAGE_only	20	22	114	3.128048	4.390719	chr4	70985310	70985511	DNA|TcMar-Mariner|MARNA	+	chr4	70902346	70988168	MSTRG.19501.7	+	70902346,70942822,70950699,70958873,70969930,70975152	70902550,70942882,70951716,70959040,70970024,70988168	0.982456
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	143558019	143558020	143558019	+	High_confidence	19	19	19	0.521341	3.681881	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.842105
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	124984280	124984310	124984301	-	RAMPAGE_only	276	323	1323	36.301817	7.032285	chrX	124984283	124984539	DNA|hAT-Tip100|MamTip2	-	chrX	124375902	124963817	TENM1|NM_014253.3	-	124375902,124382669,124383633,124385676,124392051,124405030,124406316,124420310,124422271,124453336,124481731,124497015,124503559,124520516,124523363,124529863,124546873,124561670,124563748,124565374,124641790,124645142,124646708,124651913,124653583,124671682,124705012,124736956,124894295,124895980,124963536	124381294,124382812,124384854,124386064,124392348,124405266,124406489,124420821,124422638,124453491,124481964,124497265,124503703,124520784,124523625,124529983,124547090,124561817,124563772,124565560,124641991,124645337,124646810,124652124,124653783,124671835,124705251,124737197,124894352,124896241,124963817	0.898715
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	37344693	37344718	37344712	+	High_confidence	31	42	101	2.771341	5.473017	chr20	37344715	37344779	SINE|MIR|MIRc	+	chr20	37344698	37405432	MSTRG.16311.2	+	37344698,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.603960
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	34536093	34536122	34536109	-	High_confidence	5	5	12	0.329268	3.095795	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	104766951	104766953	104766952	-	High_confidence	208	268	302	8.286583	7.072590	chr14	104766824	104767423	LTR|ERV1|LTR71B	-	chr14	104747201	104766975	MSTRG.8149.2	-	104747201,104756405,104766842	104748773,104757420,104766975	0.831126
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100934891	100935011	100934891	+	RAMPAGE_only	20	20	92	2.524389	4.272949	chr14	100934354	100935764	LINE|L1|L1M2	-	chr14	100906043	100947076	MSTRG.8059.73	+	100906043,100906935,100913431,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100906163,100910304,100931545,100936310,100937488,100938956,100940450,100942838,100944925,100947076	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	95995483	95995518	95995483	-	High_confidence	12	14	28	0.768292	4.307355	chr12	95995363	95995511	SINE|MIR|MIRb	+	chr12	95990504	95995200	HAL|ENST00000546579.1	-	95990504,95992679,95993450,95993771,95993925,95994089,95994797,95994932	95990532,95992805,95993488,95993838,95993998,95994164,95994819,95995200	0.821429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	106774844	106774902	106774844	-	High_confidence	5	5	18	0.493902	3.572431	chr6	106774792	106775067	DNA|hAT-Charlie|MER20B	+	chr6	106770125	106775004	LINC02532|ENST00000602934.1	-	106770125,106774776	106772361,106775004	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	44400916	44400951	44400950	+	RAMPAGE_only	13	13	22	0.603658	3.784942	chr3	44400872	44401016	SINE|MIR|MIRb	-	chr3	44396786	44407740	TCAIM|ENST00000469246.1	+	44396786,44400521,44401202,44407441	44396834,44400587,44401334,44407740	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	72014385	72014451	72014418	+	High_confidence	156	156	552	15.146336	7.504021	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.543478
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	57451506	57451576	57451575	+	RAMPAGE_only	10	10	57	1.564024	4.598144	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.982456
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	42872305	42872332	42872305	+	RAMPAGE_only	3	3	13	0.356707	3.392747	chr3	42872226	42872456	LINE|L2|L2c	-	chr3	42809471	42900336	AC099329.2|ENST00000471537.3	+	42809471,42819630,42887537,42897037	42809532,42819711,42887701,42900336	0.538462
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	69826011	69826020	69826011	-	RAMPAGE_only	4	4	8	0.219512	2.500000	chr6	69825808	69826275	LINE|L1|L1MEf	-	chr6	69675748	69797157	LMBRD1|NM_018368.3	-	69675748,69676449,69697562,69699042,69700764,69701442,69701888,69713644,69718955,69737941,69741788,69749340,69752258,69780493,69790295,69796812	69676271,69676541,69697641,69699192,69700869,69701545,69701953,69713797,69719081,69738015,69741877,69749408,69752356,69780554,69790472,69797157	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	59202800	59202831	59202830	+	RAMPAGE_only	12	12	19	0.521341	3.947703	chr17	59202829	59203046	SINE|Alu|AluJr	+	chr17	59197565	59203834	MSTRG.11756.10	+	59197565,59201562	59197789,59203834	0.894737
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	20204028	20204080	20204028	-	RAMPAGE_only	6	6	23	0.631097	4.106603	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.869565
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	93499292	93499335	93499292	-	High_confidence	2	2	10	0.274390	2.921928	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	157533586	157533601	157533600	-	High_confidence	10	10	16	0.439024	3.106891	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157460214	157533606	VEPH1|ENST00000487753.5	-	157460214,157470313,157495211,157533512	157460355,157470529,157495506,157533606	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	167937013	167937014	167937013	-	High_confidence	9	9	14	0.384146	3.324863	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167918067	167937040	MPC2|ENST00000271373.8	-	167918067,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937040	0.928571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	3912554	3912632	3912631	+	RAMPAGE_only	4	4	23	0.631097	4.023137	chr20	3912669	3912954	SINE|Alu|AluSg	+	chr20	3889815	3918789	MSTRG.16012.8	+	3889815,3907925,3912457,3916926	3889932,3910830,3912634,3918789	0.608696
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	45027043	45027065	45027043	+	High_confidence	3	3	9	0.246951	3.000000	chr7	45026988	45027096	SINE|MIR|MIR3	-	chr7	45027025	45076451	CCM2|ENST00000475551.5	+	45027025,45038252,45063917,45064462,45068442,45069825,45072725,45073459,45074269,45075776	45027797,45038426,45064001,45064646,45068579,45069961,45072783,45073571,45074408,45076451	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	147173225	147173261	147173225	+	High_confidence	5	5	15	0.411585	3.807355	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.866667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	69688790	69688812	69688811	+	RAMPAGE_only	2	2	7	0.192073	2.584963	chr12	69688772	69688959	DNA|hAT-Charlie|MER5A	+	chr12	69628281	69703168	MSTRG.6079.5	+	69628281,69638809,69674921	69630110,69639014,69703168	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	50756915	50756931	50756915	-	RAMPAGE_only	2	2	8	0.219512	2.521641	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	571725	571774	571754	-	High_confidence	5	10	30	0.823170	4.450212	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.566667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	130832858	130832867	130832858	-	RAMPAGE_only	5	5	11	0.301829	2.921928	chr12	130832717	130833140	LINE|L2|L2b	+	chr12	130801253	130827250	STX2|ENST00000344271.5	-	130801253,130801414,130806981,130808630,130812309,130812956,130821688,130827192	130801290,130801488,130807090,130808704,130812443,130813031,130821788,130827250	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	56117024	56117045	56117044	-	High_confidence	3	3	8	0.219512	2.807355	chr5	56117015	56117442	LINE|L1|L1M5	-	chr5	56099881	56116951	ANKRD55|ENST00000434982.2	-	56099881,56102493,56111117,56116614	56100304,56102586,56111782,56116951	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	64784639	64784659	64784658	-	RAMPAGE_only	4	4	8	0.219512	2.521641	chr14	64784593	64784728	LINE|L2|L2b	+	chr14	64766398	64823148	SPTB|NM_000347.5	-	64766398,64767302,64767662,64769033,64769589,64770884,64772579,64773219,64774396,64775124,64779156,64779724,64782289,64784246,64785536,64785748,64786403,64791718,64792996,64794466,64795336,64796556,64797728,64799746,64800755,64801284,64801753,64802225,64803606,64804938,64822946	64766801,64767352,64767859,64769118,64769728,64771129,64772954,64773424,64774527,64775403,64779246,64779931,64782553,64784393,64785627,64785951,64787160,64791856,64793867,64794617,64795639,64796715,64797846,64799934,64800868,64801400,64801834,64802317,64803780,64805090,64823148	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	57861372	57861394	57861372	+	High_confidence	2	4	9	0.246951	2.500000	chr19	57861335	57861627	SINE|Alu|AluJb	-	chr19	57861284	57862158	ZNF587|ENST00000596433.1	+	57861284,57861793	57861473,57862158	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	43133126	43133135	43133126	+	High_confidence	3	3	9	0.246951	3.000000	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133161	43146521	TMEM62|ENST00000565291.5	+	43133161,43134256,43135511,43138573,43146492	43133402,43134368,43135649,43138619,43146521	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	154571315	154571683	154571316	+	RAMPAGE_only	62	96	928	25.463406	6.799261	chr4	154571221	154571487	SINE|Alu|AluSx4	+	chr4	154562979	154572763	FGB|NM_005141.4	+	154562979,154565807,154566488,154567592,154568380,154569181,154569513,154570418	154563132,154565999,154566672,154567820,154568494,154569307,154569799,154572763	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	113873326	113873347	113873326	-	High_confidence	11	11	47	1.289634	4.809492	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.787234
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	121090980	121090981	121090980	-	RAMPAGE_only	7	8	10	0.274390	3.169925	chr9	121090806	121091158	LTR|ERVL-MaLR|THE1B	-	chr9	120952334	121075174	C5|NM_001317163.1	-	120952334,120953729,120957284,120960247,120961481,120962670,120962892,120963635,120969060,120970169,120971929,120974778,120976699,120980082,120981843,120982654,120989045,120989567,120991190,120996239,120997546,121005918,121006903,121008407,121013872,121015198,121016253,121017361,121017642,121019975,121021508,121023403,121025453,121027159,121030396,121032112,121034802,121037880,121043003,121046190,121074753	120952868,120953868,120957368,120960337,120961565,120962776,120962967,120963738,120969118,120970251,120971992,120974931,120976905,120980254,120981939,120982814,120989121,120989780,120991280,120996300,120997774,121006058,121006977,121008498,121014070,121015261,121016383,121017511,121017852,121020179,121021694,121023519,121025580,121027274,121030487,121032195,121034894,121037951,121043166,121046383,121075174	0.600000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	60182441	60182445	60182444	-	High_confidence	7	7	12	0.329268	2.913977	chr11	60182383	60182456	SINE|MIR|MIRb	-	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	103274363	103274396	103274363	-	RAMPAGE_only	3	3	12	0.329268	3.277613	chr7	103274079	103275487	LTR|ERV1|LTR12C	-	chr7	103175132	103280219	DPY19L2P2|ENST00000439473.5	-	103175132,103184001,103185437,103195439,103197186,103198594,103210266,103212160,103214000,103216462,103225104,103233799,103234648,103237755,103238802,103240561,103242988,103254781,103257603,103271731,103274069,103277613,103279832	103175411,103184127,103185537,103195614,103197306,103198619,103210313,103212232,103214102,103216543,103225164,103233886,103234726,103237855,103238871,103240653,103243046,103254875,103257724,103271869,103275627,103277638,103280219	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	9950093	9950106	9950093	+	RAMPAGE_only	5	5	10	0.274390	2.641604	chr18	9950041	9950258	LINE|L2|L2c	-	chr18	9936726	9954477	VAPA|ENST00000583475.1	+	9936726,9950394,9954052	9937066,9950568,9954477	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	203797138	203797165	203797164	+	High_confidence	3	3	7	0.192073	2.807355	chr1	203797152	203797273	SINE|MIR|MIR3	+	chr1	203797522	203800462	ZBED6|NM_001174108.1	+	203797522	203800462	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	108885839	108885872	108885871	-	RAMPAGE_only	59	61	110	3.018292	6.138875	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108867516	108893083	ELP1|ENST00000495759.5	-	108867516,108874894,108875632,108877994,108878622,108879445,108880051,108881704,108882124,108889331,108891202,108892985	108869182,108874970,108875735,108878149,108878750,108879557,108880165,108881765,108882187,108889393,108891404,108893083	0.836364
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	107747234	107747257	107747234	+	RAMPAGE_only	8	8	18	0.493902	3.524945	chr7	107747183	107747317	LINE|RTE-BovB|MamRTE1	+	chr7	107744436	107758820	CBLL1|ENST00000420796.1	+	107744436,107748879,107753410,107753894,107755417,107758142	107744837,107749047,107753511,107753978,107755491,107758820	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	62600195	62600196	62600195	-	High_confidence	7	7	9	0.246951	2.947703	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	43013462	43013479	43013462	-	High_confidence	3	5	12	0.329268	3.084963	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	128115648	128115666	128115648	-	RAMPAGE_only	2	2	8	0.219512	2.521641	chr9	128115520	128115653	SINE|MIR|MIRc	-	chr9	128108580	128118693	SLC25A25-AS1|ENST00000418747.2	-	128108580,128113477,128115073,128117709,128117922	128112649,128114686,128115289,128117835,128118693	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	70468125	70468126	70468125	+	High_confidence	7	7	10	0.274390	2.725481	chr12	70467961	70468294	LTR|ERV1|MER61A	+	chr12	70468084	70543040	AC025569.1|ENST00000548687.5	+	70468084,70510211,70510407,70513184,70520198,70520785,70522523,70527674,70538049	70468327,70510284,70510577,70513227,70520267,70520928,70522630,70527738,70543040	0.600000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	131125630	131125652	131125630	+	High_confidence	158	158	331	9.082314	6.804169	chr6	131125612	131126020	LTR|ERVL|LTR102_Mam	+	chr6	131125611	131282844	MSTRG.22404.1	+	131125611,131145284,131160058,131165080,131169112,131199460,131219660,131282398	131125797,131145416,131160198,131165217,131169273,131199573,131219808,131282844	0.903323
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	48421693	48421710	48421693	-	RAMPAGE_only	3	4	9	0.246951	2.503258	chr3	48421525	48421664	SINE|MIR|MIRb	-	chr3	48403853	48429463	PLXNB1|NM_002673.5	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48429252	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48429463	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	111473767	111473768	111473767	+	High_confidence	8	8	11	0.301829	3.095795	chr1	111473535	111473833	SINE|Alu|AluYm1	+	chr1	111473791	111478512	C1orf162|ENST00000343534.9	+	111473791,111476017,111476797,111477333,111477650,111477982	111474030,111476065,111476867,111477428,111477775,111478512	0.727273
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	196715603	196715746	196715644	+	RAMPAGE_only	42	42	357	9.795728	6.627331	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.941176
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	134467260	134467288	134467264	+	RAMPAGE_only	44	44	124	3.402438	5.549029	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134466184	134487915	AP004608.1|ENST00000528482.6	+	134466184,134467864,134480844,134482626,134485961	134467615,134467987,134480911,134482730,134487915	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	34918370	34918379	34918378	+	RAMPAGE_only	5	5	9	0.246951	2.641604	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	46022533	46022539	46022533	-	High_confidence	16	18	28	0.768292	4.182006	chr10	46022468	46022764	SINE|Alu|AluY	-	chr10	46005087	46023455	NCOA4|ENST00000585132.5	-	46005087,46009410,46010222,46012882,46013549,46014443,46014853,46015125,46016539,46023329	46006597,46009551,46011206,46013026,46013639,46014552,46014942,46015266,46016694,46023455	0.821429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	138065189	138065192	138065189	+	High_confidence	8	9	16	0.439024	3.875000	chr7	138064858	138065355	LTR|ERVL|LTR108a_Mam	+	chr7	138064794	138117986	MSTRG.23784.2	+	138064794,138076448,138088600,138091767,138097865,138105306,138106607,138107414,138113689,138116619	138065315,138076611,138088768,138091884,138097943,138105429,138106717,138107580,138113772,138117986	0.937500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	94428642	94428657	94428656	+	RAMPAGE_only	3	5	14	0.384146	3.546594	chr1	94428538	94428829	LTR|ERVL-MaLR|THE1B	+	chr1	94418830	94475694	ABCD3|ENST00000468860.1	+	94418830,94432586,94458606,94464774,94467918,94473765,94475142,94475613	94418951,94432652,94458643,94464873,94468007,94473835,94475240,94475694	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	5587450	5587482	5587481	-	RAMPAGE_only	4	4	16	0.439024	2.739572	chr20	5587375	5587665	SINE|Alu|AluSg	-	chr20	5544438	5610924	MSTRG.16027.2	-	5544438,5557944,5558683,5559939,5561464,5565016,5566732,5567482,5570146,5573914,5575412,5575815,5578379,5580007,5584280,5586193,5598724,5604363,5610841	5547850,5558105,5558819,5560076,5561530,5565078,5566772,5567560,5570239,5573969,5575545,5575978,5578611,5580131,5584322,5593411,5598821,5604440,5610924	0.937500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	31587201	31587275	31587201	+	High_confidence	107	114	446	12.237801	5.598734	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.984305
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	29077437	29077491	29077486	+	High_confidence	16	19	55	1.509146	4.968210	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077474	29091576	MAP3K7CL|ENST00000419845.5	+	29077474,29080551,29085812,29091500	29077713,29080708,29085917,29091576	0.690909
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	127056408	127056427	127056408	-	RAMPAGE_only	1	2	8	0.219512	2.807355	chr7	127056401	127056550	DNA|hAT-Tip100|MER45A	+	chr7	126533050	127112320	GRM8|ENST00000480995.5	-	126533050,126609493,126701756,126769864,126902541,126903971,126904547,127105295,127106495,127112168	126533778,126609498,126701827,126770065,126902679,126904126,126904683,127105370,127106712,127112320	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	139106413	139106435	139106413	-	RAMPAGE_only	8	8	23	0.631097	3.081768	chrX	139106176	139106374	SINE|MIR|MIR1_Amn	-	chrX	138857511	139203525	FGF13|ENST00000421460.1	-	138857511,138864576,139203415	138857679,138864650,139203525	0.913043
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	171251834	171251850	171251849	-	High_confidence	4	4	13	0.356707	3.392747	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171247579	171251794	AL445673.1|ENST00000455124.2	-	171247579,171251522	171247723,171251794	0.538462
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	80211346	80211351	80211346	-	RAMPAGE_only	7	7	14	0.384146	3.180833	chr5	80211207	80211707	LTR|ERV1|LTR64	+	chr5	80177314	80255198	SERINC5|ENST00000513907.1	-	80177314,80177885,80202885,80255081	80177397,80178064,80203053,80255198	0.642857
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	129489073	129489126	129489111	+	High_confidence	6	6	44	1.207317	4.987730	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.704545
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	73841830	73841843	73841842	-	High_confidence	3	3	13	0.356707	2.777363	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.923077
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65431761	65431803	65431761	+	RAMPAGE_only	13	14	30	0.823170	4.640224	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422799	65445488	MSTRG.4447.4	+	65422799,65423294,65437240,65444287,65445449	65423212,65437184,65444263,65445407,65445488	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	3062924	3062940	3062939	-	High_confidence	5	6	12	0.329268	2.732159	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	58306165	58306214	58306165	+	High_confidence	4	4	18	0.493902	3.690117	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58315183	MSTRG.14168.30	+	58305376,58306087,58312165	58305445,58306216,58315183	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	52661488	52661507	52661506	+	RAMPAGE_only	4	4	17	0.466463	3.124844	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	24011756	24011757	24011756	+	High_confidence	10	10	10	0.274390	3.121928	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	48036213	48036218	48036217	+	RAMPAGE_only	5	5	9	0.246951	2.641604	chrX	48035853	48036312	LTR|ERV1|MER92A	-	chrX	48056309	48066583	ZNF630-AS1|NR_046742.1	+	48056309,48066309	48056432,48066583	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	143281657	143281687	143281686	-	High_confidence	60	68	211	5.789632	5.525226	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.573460
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	27009115	27009157	27009156	+	RAMPAGE_only	2	2	7	0.192073	2.807355	chr9	27009197	27009327	DNA|hAT-Charlie|MER5A1	+	chr9	26956478	27036800	IFT74|ENST00000429045.6	+	26956478,26961948,26978127,26980570,26984256,26984498,26988668,26990133,27009019,27011905,27016906,27018646,27029024,27036449	26956516,26962087,26978263,26980619,26984355,26984559,26988728,26990195,27009158,27011968,27017050,27018687,27029104,27036800	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	2881285	2881286	2881285	-	High_confidence	12	12	12	0.329268	3.251629	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	158644571	158644588	158644584	-	RAMPAGE_only	2	2	8	0.219512	2.521641	chr1	158644539	158644906	LINE|L2|L2c	+	chr1	158610705	158686698	SPTA1|ENST00000368147.8	-	158610705,158612816,158613720,158614252,158615215,158617536,158618038,158619221,158620169,158622982,158626145,158626838,158627624,158634542,158635912,158636640,158638032,158639581,158639869,158642410,158642813,158643321,158644252,158645187,158645494,158647538,158648508,158649855,158651366,158652466,158653273,158654610,158656563,158657476,158661286,158662701,158666315,158667857,158669407,158669708,158671342,158672058,158674328,158674539,158676140,158677689,158678400,158680582,158681526,158683370,158685107,158686493	158611389,158612961,158613867,158614306,158615403,158617588,158618056,158619334,158620466,158623192,158626222,158627007,158627723,158634675,158636034,158636761,158638241,158639686,158640007,158642542,158642976,158643425,158644396,158645385,158645594,158647720,158648653,158649947,158651468,158652653,158653425,158654748,158656656,158657694,158661409,158662945,158666497,158668062,158669563,158669786,158671453,158672196,158674430,158674675,158676295,158677834,158678534,158680729,158681667,158683496,158685347,158686698	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	167863564	167863579	167863578	+	RAMPAGE_only	20	28	82	2.249999	5.135868	chr1	167863572	167864915	LTR|ERV1|Harlequin-int	+	chr1	167935782	167987547	DCAF6|ENST00000450548.5	+	167935782,167951799,167966628,167974829,167987494	167936112,167951861,167966721,167975015,167987547	0.731707
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	30437334	30437357	30437345	+	RAMPAGE_only	7	7	25	0.685975	4.323856	chr10	30437330	30437549	SINE|MIR|MIR	-	chr10	30438821	30461833	MAP3K8|ENST00000375321.1	+	30438821,30447781,30450257,30451637,30458083,30459254,30460705	30439274,30447949,30450519,30451744,30458236,30459501,30461833	0.960000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	53464773	53464834	53464833	+	RAMPAGE_only	6	6	26	0.713414	4.501629	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.692308
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	45280034	45280048	45280047	+	High_confidence	4	4	11	0.301829	3.121928	chr19	45280066	45280316	SINE|Alu|AluJb	+	chr19	45280144	45287664	MARK4|ENST00000590897.1	+	45280144,45280574,45287446	45280483,45280734,45287664	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	142926755	142926767	142926766	+	High_confidence	6	6	14	0.384146	3.546594	chr3	142926619	142927109	LINE|L1|HAL1	+	chr3	142926674	142942536	LOC100507389|NR_038455.1	+	142926674,142933204,142936422,142938474,142941398	142926896,142933268,142936646,142938653,142942536	0.642857
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	121207793	121207803	121207793	+	High_confidence	3	3	9	0.246951	2.947703	chr9	121207755	121207923	SINE|Alu|AluJb	-	chr9	121207793	121265186	GSN|ENST00000434663.5	+	121207793,121209295,121210235,121210783,121231164,121265153	121207897,121209397,121210329,121210867,121231303,121265186	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	24427572	24427608	24427607	-	RAMPAGE_only	2	2	12	0.329268	3.095795	chr6	24427563	24427866	SINE|Alu|AluSx	+	chr6	24425831	24489622	GPLD1|NM_001503.3	-	24425831,24433186,24433362,24436575,24437112,24445545,24445725,24446837,24447876,24448133,24449788,24454014,24456497,24460278,24462729,24466679,24466911,24467166,24472581,24473618,24475120,24476180,24479880,24486074,24489414	24429118,24433237,24433389,24436736,24437289,24445639,24445831,24446979,24448033,24448208,24449899,24454201,24456637,24460399,24462795,24466819,24466939,24467274,24472636,24473667,24475231,24476278,24479959,24486130,24489622	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	44936157	44936168	44936167	+	RAMPAGE_only	3	3	7	0.192073	2.584963	chr19	44936182	44936324	SINE|MIR|MIR	+	chr19	44942237	44949565	APOC4-APOC2|NR_037932.1	+	44942237,44944748,44945139,44948465,44948700,44949158	44942353,44944890,44946075,44948533,44948860,44949565	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	31350226	31350254	31350226	+	High_confidence	8	8	16	0.439024	3.750000	chr4	31349865	31350457	LTR|ERV1|MER92B	-	chr4	31350283	31351725	AC104071.1|ENST00000505636.1	+	31350283,31351191	31350351,31351725	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	139551217	139551241	139551217	+	RAMPAGE_only	3	3	8	0.219512	2.521641	chrX	139551151	139551275	DNA|hAT-Ac|OldhAT1	+	chrX	139544680	139563301	F9|ENST00000643157.1	+	139544680,139547304,139548362,139551061,139560740,139561523,139563105	139545148,139547894,139548491,139551264,139560855,139561741,139563301	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	16186271	16186272	16186271	-	High_confidence	6	6	8	0.219512	3.000000	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	63527735	63527761	63527735	+	RAMPAGE_only	2	2	9	0.246951	2.947703	chr6	63527614	63527744	SINE|MIR|MIR3	-	chr6	63521760	63576582	PTP4A1|ENST00000470661.1	+	63521760,63527818,63576435	63521826,63528084,63576582	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	48255346	48255390	48255346	-	RAMPAGE_only	4	4	17	0.466463	3.734522	chr4	48255094	48255505	LTR|ERVL-MaLR|MLT1K	-	chr4	48135782	48269797	TEC|NM_003215.2	-	48135782,48138664,48138903,48141354,48145078,48145407,48146324,48149556,48150862,48156679,48163701,48167777,48168585,48170247,48171367,48176081,48228476,48269751	48137499,48138822,48139022,48141419,48145295,48145579,48146399,48149690,48150942,48156734,48163767,48167953,48168626,48170376,48171449,48176186,48228659,48269797	0.823529
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	59839182	59839191	59839182	+	RAMPAGE_only	3	3	8	0.219512	2.521641	chr17	59838987	59839290	SINE|Alu|AluSq2	-	chr17	59837950	59840315	VMP1|ENST00000587470.1	+	59837950,59839767	59838397,59840315	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	111839035	111839062	111839044	-	RAMPAGE_only	7	7	20	0.548780	3.621928	chr2	111838946	111839356	LTR|ERVL-MaLR|MLT1J1	+	chr2	111766270	111856847	ANAPC1|ENST00000427997.5	-	111766270,111772340,111776858,111778674,111780298,111782368,111783896,111784322,111785359,111788233,111792361,111794077,111794232,111794817,111800796,111802427,111803447,111803704,111805801,111808946,111815369,111818839,111821238,111822421,111824965,111825130,111825776,111831285,111833219,111834603,111838437,111843411,111847137,111847724,111850775,111856613,111856795	111766995,111772475,111777057,111778770,111780385,111782507,111783964,111784400,111785477,111788320,111792555,111794131,111794323,111794894,111800871,111802506,111803530,111803839,111805893,111809181,111815641,111818958,111821453,111822600,111825036,111825167,111825855,111831434,111833311,111834872,111838512,111843599,111847198,111847865,111850910,111856679,111856847	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	67571153	67571189	67571188	+	High_confidence	6	6	17	0.466463	3.500000	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.941176
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	73080369	73080370	73080369	-	High_confidence	54	54	54	1.481707	5.074241	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.870370
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	80039003	80039015	80039012	+	RAMPAGE_only	8	10	26	0.713414	4.083856	chr6	80038889	80039013	SINE|MIR|MIR	-	chr6	80004604	80042527	TTK|NM_001166691.1	+	80004604,80005829,80007808,80008385,80010813,80011433,80011728,80011885,80013278,80014462,80022323,80026380,80027884,80031466,80034984,80035265,80036474,80037966,80039695,80040195,80040605,80042118	80004713,80005982,80008031,80008492,80010957,80011548,80011801,80011980,80013366,80014586,80022472,80026514,80028011,80031559,80035142,80035417,80036599,80038047,80039872,80040280,80040703,80042527	0.961538
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	57496033	57496034	57496033	-	RAMPAGE_only	5	5	7	0.192073	2.584963	chr11	57495848	57495994	SINE|MIR|MIRb	-	chr11	57491252	57494520	SLC43A1|ENST00000529452.5	-	57491252,57491590,57491715,57493992	57491362,57491626,57491862,57494520	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	174902807	174902836	174902831	+	RAMPAGE_only	8	9	20	0.548780	3.932138	chr1	174901606	174902942	LINE|L1|L1PA10	-	chr1	174877439	174995301	RABGAP1L|ENST00000392064.6	+	174877439,174957456,174969276,174976077,174978806,174982833,174988640,174989848	174877605,174957549,174969387,174976182,174978890,174982905,174988838,174995301	0.700000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	49615256	49615257	49615256	-	High_confidence	5	5	8	0.219512	2.750000	chr6	49614920	49615249	SINE|Alu|AluSx3	-	chr6	49612408	49615267	RHAG|ENST00000646874.1	-	49612408,49614686,49614937	49612534,49614853,49615267	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	57003810	57003811	57003810	+	High_confidence	9	9	11	0.301829	3.095795	chr16	57003639	57003837	LTR|ERVL|LTR16A1	+	chr16	57003852	57020936	NLRC5|ENST00000544641.5	+	57003852,57017073,57020700	57004095,57017188,57020936	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	63168005	63168053	63168034	-	RAMPAGE_only	16	18	53	1.454268	4.470766	chr11	63166880	63172605	LINE|L1|L1PA8	+	chr11	63163829	63229647	MSTRG.4375.6	-	63163829,63164525,63166043,63180659,63183693,63217313,63217580,63228460,63229250	63164073,63164634,63168060,63180775,63183817,63217482,63217735,63228564,63229647	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	3795732	3795789	3795750	+	High_confidence	7	9	70	1.920731	5.277717	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	30354679	30354685	30354679	-	High_confidence	2	2	7	0.192073	2.807355	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	9109598	9109599	9109598	-	RAMPAGE_only	4	4	7	0.192073	2.807355	chr3	9109543	9109955	LINE|L2|L2c	-	chr3	9006978	9124977	SRGAP3|ENST00000618999.4	-	9006978,9010307,9013307,9013736,9014741,9015596,9025260,9026934,9028099,9032649,9038062,9047390,9049260,9053026,9056232,9058250,9060230,9064395,9080024,9104679,9124724	9008347,9010387,9013535,9013842,9014841,9015731,9025338,9026995,9028130,9032752,9038090,9047475,9049469,9053224,9056334,9058472,9060359,9064581,9080087,9104842,9124977	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	150944100	150944112	150944100	-	RAMPAGE_only	23	23	52	1.426829	4.792982	chr4	150943828	150944250	LTR|ERVL-MaLR|MLT1F	+	chr4	150264530	151015267	LRBA|ENST00000510413.5	-	150264530,150277852,150282449,150285932,150302627,150310228,150315560,150321190,150325808,150349991,150415437,150435588,150436723,150467672,150471623,150487731,150490917,150588047,150590712,150599006,150683550,150735257,150761782,150798080,150806270,150808319,150817123,150828179,150831816,150844099,150844657,150848817,150849421,150850723,150851884,150867670,150868181,150870524,150871344,150872662,150893051,150896393,150897738,150900048,150905837,150906296,150908333,150908659,150914194,150915607,150916400,150916616,150921197,150928515,150928833,151014426,151015201	150265812,150278004,150282646,150286034,150302792,150310384,150315623,150321368,150325898,150350159,150415590,150435708,150436864,150467785,150471739,150487834,150491035,150588184,150590859,150599131,150683717,150735366,150761847,150798142,150806404,150808398,150817257,150828621,150831976,150844207,150844779,150848998,150849575,150850902,150852943,150867863,150868305,150870606,150871453,150872755,150893149,150896456,150897818,150900217,150905990,150906405,150908467,150908857,150914341,150915727,150916527,150916738,150921293,150928616,150929065,151014861,151015267	0.846154
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	63516425	63516456	63516425	+	RAMPAGE_only	2	2	12	0.329268	3.277613	chr6	63516454	63516579	SINE|MIR|MIR	+	chr6	63521745	63583377	PTP4A1|ENST00000648894.1	+	63521745,63527818,63532336,63576435,63578436,63578897,63579256,63580056	63521826,63528084,63532530,63576985,63578529,63579028,63579331,63583377	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	118139096	118139097	118139096	+	High_confidence	31	31	31	0.850609	4.542748	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.806452
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	89887493	89887508	89887493	+	RAMPAGE_only	7	9	16	0.439024	3.323231	chr10	89887497	89887644	SINE|MIR|MIR3	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	112850264	112850284	112850283	+	High_confidence	7	7	20	0.548780	3.884184	chr1	112850184	112850373	SINE|MIR|MIR	+	chr1	112850075	112877867	AL390729.1|ENST00000422022.1	+	112850075,112877729	112850427,112877867	0.950000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	52543591	52543603	52543591	-	RAMPAGE_only	2	2	6	0.164634	2.584963	chr14	52543581	52543672	LINE|L2|L2a	+	chr14	52430589	52552506	TXNDC16|ENST00000281741.8	-	52430589,52439203,52440563,52455323,52457089,52470036,52470511,52482229,52482821,52488362,52490390,52490838,52511239,52514879,52519171,52536718,52537598,52542370,52543397,52544263,52552315	52432587,52439394,52440724,52455462,52457174,52470173,52470680,52482289,52482965,52488486,52490451,52491005,52511390,52514970,52519293,52536793,52537672,52542453,52543630,52544371,52552506	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	52615423	52615438	52615437	-	High_confidence	4	4	14	0.384146	3.180833	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.928571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	45594354	45594391	45594354	-	High_confidence	4	4	34	0.932927	4.594672	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45454592	45594491	MSTRG.2953.4	-	45454592,45459119,45461230,45464238,45489366,45533109,45553111,45590523,45594234	45458543,45459267,45461411,45464327,45489417,45533289,45553204,45590574,45594491	0.882353
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	93218018	93218024	93218023	+	RAMPAGE_only	3	3	8	0.219512	2.750000	chr7	93217915	93218579	LINE|L2|L2a	-	chr7	93232339	93276428	VPS50|NM_024553.2	+	93232339,93239865,93252652,93253859,93256508,93257393,93258158,93258356,93259549,93271219,93272634,93276164	93232500,93239934,93252775,93253931,93256562,93257464,93258276,93258392,93259632,93271262,93272733,93276428	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	157274892	157274893	157274892	+	RAMPAGE_only	22	22	27	0.740853	4.384517	chr1	157274375	157275504	LTR|ERV1|HERVFH21-int	-	chr1	157280715	157283068	AL138900.3|ENST00000607010.1	+	157280715,157282577	157280853,157283068	0.703704
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	118212207	118212214	118212213	-	High_confidence	17	17	35	0.960366	4.057476	chr11	118212116	118212308	SINE|MIR|MIRb	-	chr11	118205658	118212470	JAML|ENST00000531536.1	-	118205658,118210486,118212406	118205991,118210712,118212470	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	95996069	95996099	95996069	-	High_confidence	4	4	14	0.384146	3.334679	chr12	95996044	95996084	LINE|L2|L2b	-	chr12	95987073	95995928	HAL|ENST00000552509.5	-	95987073,95988192,95990392,95992679,95993450,95993643,95993925,95994089,95994797,95994932,95995663	95987214,95988240,95990532,95992805,95993488,95993674,95993998,95994164,95994825,95994993,95995928	0.785714
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	119110879	119110922	119110890	+	High_confidence	4	5	13	0.356707	3.238901	chr11	119110843	119110902	LINE|CR1|L3b	+	chr11	119111056	119117121	C2CD2L|ENST00000528586.2	+	119111056,119111262,119111520,119112327,119112481,119112699,119113610,119113854,119114079,119116024	119111168,119111374,119111629,119112392,119112609,119112874,119113712,119113988,119114365,119117121	0.846154
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	77175226	77175255	77175226	+	High_confidence	8	9	39	1.070122	4.538751	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.897436
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	113180639	113180656	113180639	+	RAMPAGE_only	2	2	9	0.246951	2.947703	chr2	113180551	113180665	SINE|MIR|MIR3	+	chr2	113173996	113209396	PSD4|ENST00000441564.7	+	113173996,113182345,113184956,113185364,113185960,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197749,113198739,113199082,113201157	113174054,113183512,113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113209396	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	4239733	4239749	4239748	-	High_confidence	7	9	14	0.384146	3.392747	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	139364647	139364670	139364647	+	RAMPAGE_only	9	9	18	0.493902	3.683542	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	589071	589072	589071	-	RAMPAGE_only	6	6	9	0.246951	2.750000	chr12	588835	589215	LINE|L1|L1M5	+	chr12	564295	610413	NINJ2|NM_001294345.1	-	564295,565216,565949,610345	564681,565401,566178,610413	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	75007504	75007505	75007504	+	RAMPAGE_only	4	5	7	0.192073	2.807355	chr15	75007388	75007556	SINE|Alu|AluJo	-	chr15	75011657	75018467	SCAMP5|ENST00000564779.5	+	75011657,75011791,75012676,75016592,75017869,75018417	75011680,75011846,75012805,75016749,75017971,75018467	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	33864056	33864079	33864056	+	RAMPAGE_only	2	2	8	0.219512	3.000000	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	38318984	38318985	38318984	-	High_confidence	7	7	11	0.301829	3.095795	chr7	38318855	38319140	LINE|L2|L2c	+	chr7	38317016	38318861	TRGV9|ENST00000444775.2	-	38317016,38317446	38317336,38318861	0.818182
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	101585871	101585907	101585871	-	RAMPAGE_only	2	2	10	0.274390	3.169925	chr9	101584953	101586373	LINE|L2|L2a	+	chr9	101569351	101738580	GRIN3A|NM_133445.2	-	101569351,101577767,101579195,101613375,101623317,101628255,101670059,101686595,101737280	101573513,101577844,101579360,101613527,101623433,101628401,101671107,101687200,101738580	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	16931979	16931980	16931979	+	RAMPAGE_only	16	16	18	0.493902	3.969816	chr3	16931832	16932159	LTR|ERVL-MaLR|MLT1A0	+	chr3	16933089	17090593	PLCL2|ENST00000432376.5	+	16933089,17009673,17014707,17042873,17067955,17089732	16933291,17012160,17014911,17042949,17068065,17090593	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	67131658	67131664	67131658	+	RAMPAGE_only	3	5	8	0.219512	2.750000	chr8	67131654	67131745	LINE|L1|L1ME3B	-	chr8	67083847	67196614	CSPP1|NM_001291339.1	+	67083847,67086006,67093542,67095292,67103036,67105904,67111971,67113804,67115913,67118247,67118742,67131950,67137455,67154023,67158446,67158990,67161810,67163731,67164390,67172415,67175295,67177679,67179862,67190649,67193463,67195381	67084338,67086110,67093641,67095732,67103135,67105975,67112065,67113862,67116122,67118369,67118821,67132080,67137603,67154136,67158596,67159137,67161915,67163798,67164508,67172555,67175436,67177726,67179926,67190759,67193602,67196614	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	2242922	2242923	2242922	+	High_confidence	50	50	50	1.371951	4.998563	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	118700419	118700427	118700419	+	High_confidence	4	4	13	0.356707	3.546594	chr11	118700359	118700777	LTR|ERVL-MaLR|MLT1H	+	chr11	118700426	118708848	AP002954.1|ENST00000646572.1	+	118700426,118704607,118708381	118700643,118704838,118708848	0.846154
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	66702552	66702574	66702552	+	RAMPAGE_only	2	2	10	0.274390	2.921928	chr5	66702271	66703056	LINE|L2|L2a	-	chr5	66759727	66930961	MAST4|ENST00000452953.5	+	66759727,66788669,66899950,66930746	66759862,66788794,66899982,66930961	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	172958855	172958919	172958918	+	High_confidence	10	10	51	1.399390	4.286719	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.980392
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	138097595	138097642	138097595	+	RAMPAGE_only	3	4	20	0.548780	3.621928	chr7	138097260	138097636	LTR|ERVL|LTR16A2	-	chr7	138076476	138117986	AKR1D1|ENST00000242375.7	+	138076476,138088600,138091767,138097865,138105306,138106607,138107414,138113689,138116619	138076611,138088768,138091884,138097943,138105429,138106717,138107580,138113772,138117986	0.950000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	8663960	8664009	8664008	-	RAMPAGE_only	12	13	39	1.070122	4.649115	chr1	8663757	8664111	LINE|L2|L2b	+	chr1	8353942	8656371	RERE|ENST00000400907.6	-	8353942,8355418,8364745,8365811,8422726,8465924,8495062,8497404,8508626,8541213,8556474,8557417,8614560,8624309,8655972	8355120,8355599,8364838,8365974,8422807,8466023,8495162,8497529,8508675,8541318,8556571,8557523,8614686,8624380,8656371	0.948718
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	2669801	2669802	2669801	-	RAMPAGE_only	7	7	9	0.246951	2.947703	chr11	2669762	2669901	LTR|ERVL|LTR84b	+	chr11	2608327	2699994	KCNQ1OT1|ENST00000597346.1	-	2608327	2699994	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	30971762	30971767	30971762	+	High_confidence	8	9	14	0.384146	3.521641	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	116811016	116811026	116811017	+	High_confidence	81	107	159	4.362803	6.097848	chr7	116810958	116811034	SINE|tRNA-RTE|MamSINE1	+	chr7	116810971	116848448	MSTRG.23616.1	+	116810971,116835550,116838595	116811102,116835648,116848448	0.930818
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	121498518	121498562	121498518	-	RAMPAGE_only	4	4	22	0.603658	3.884184	chr10	121498455	121498527	DNA|hAT-Ac|OldhAT1	+	chr10	121479854	121515179	FGFR2|ENST00000429361.5	-	121479854,121485394,121487353,121487990,121496531,121498494,121500825,121503789,121515116	121480021,121485532,121487424,121488113,121496722,121498605,121500947,121503941,121515179	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	59651208	59651253	59651208	+	RAMPAGE_only	8	9	77	2.112804	4.992782	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	184568375	184568409	184568398	+	High_confidence	7	8	24	0.658536	3.795089	chr1	184568204	184568449	LINE|L1|L1MB3	-	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.958333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	38881001	38881017	38881001	-	RAMPAGE_only	5	5	9	0.246951	2.947703	chr14	38880649	38881113	LTR|ERVL-MaLR|MLT1F2	-	chr14	38749338	38916882	LINC00639|NR_039982.1	-	38749338,38835230,38835541,38890740,38916781	38749654,38835398,38839204,38890798,38916882	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	193656810	193656851	193656850	+	High_confidence	5	5	13	0.356707	3.418296	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193656765	193695408	MSTRG.19018.32	+	193656765,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193656922,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695408	0.923077
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	43214623	43214624	43214623	-	RAMPAGE_only	7	7	10	0.274390	3.121928	chr15	43214586	43214668	DNA|hAT-Tip100|Arthur1C	+	chr15	43197264	43221009	MSTRG.8516.8	-	43197264,43201843,43203114,43206329,43207198,43208229,43209273,43210334,43211415,43216267,43220815	43197464,43201977,43203275,43206629,43207441,43208775,43209451,43210439,43215328,43216453,43221009	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	159428356	159428367	159428356	-	RAMPAGE_only	10	10	16	0.439024	3.640224	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	99410112	99410113	99410112	+	High_confidence	7	7	11	0.301829	3.027169	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.818182
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	49516095	49516103	49516095	+	RAMPAGE_only	2	2	6	0.164634	2.584963	chr19	49516011	49516134	LINE|L2|L2a	-	chr19	49513403	49525263	FCGRT|ENST00000598319.5	+	49513403,49513881,49514210,49520668,49524506	49513473,49514133,49514486,49521201,49525263	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	95092485	95092486	95092485	+	High_confidence	19	19	20	0.548780	3.892407	chr1	95091207	95092800	LTR|ERV1|LTR12C	+	chr1	95092516	95197607	TMEM56|NM_001199679.1	+	95092516,95143890,95148701,95150207,95151324,95173815,95191549	95092881,95144056,95148791,95150266,95151419,95173889,95197607	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	68882879	68882912	68882879	-	High_confidence	10	13	46	1.262195	4.711422	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.934783
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	54617346	54617348	54617347	+	High_confidence	8	16	19	0.521341	3.787144	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	83179178	83179179	83179178	+	High_confidence	1807	1814	2188	60.036565	6.908026	chr15	83178896	83179386	LTR|ERVL|LTR53	+	chr15	83179181	83188505	MSTRG.9105.2	+	83179181,83179777,83180666,83185933	83179251,83179848,83184855,83188505	0.945612
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	16624263	16624278	16624263	-	RAMPAGE_only	2	2	10	0.274390	2.921928	chr2	16624104	16624272	SINE|MIR|MIR3	-	chr2	16552935	16665828	FAM49A|ENST00000406434.5	-	16552935,16555068,16559459,16560989,16561160,16561455,16562004,16563988,16565645,16588049,16622938,16623863,16665779	16552999,16555139,16559586,16561069,16561277,16561533,16562141,16564094,16565767,16588129,16623137,16624019,16665828	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	93879162	93879175	93879162	-	RAMPAGE_only	2	4	10	0.274390	2.947703	chr3	93878990	93879151	SINE|MIR|MIRb	-	chr3	93873108	93958754	PROS1|ENST00000648381.1	-	93873108,93876965,93879162,93884727,93886335,93892932,93896575,93898447,93900803,93905783,93906020,93910618,93924239,93927249,93958510	93874405,93877191,93879314,93884896,93886503,93893122,93896691,93898569,93900929,93905915,93906143,93910705,93924264,93927407,93958754	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	108599767	108599777	108599770	+	RAMPAGE_only	66	70	264	7.243900	6.805496	chr3	108599617	108599949	LTR|ERVL-MaLR|MLT1A0	+	chr3	108602850	108691387	DZIP3|ENST00000463306.1	+	108602850,108605334,108608088,108611173,108616540,108624443,108625844,108629061,108632952,108634870,108636615,108637495,108642437,108644163,108646616,108647942,108648917,108651136,108654144,108661876,108662129,108669680,108672559,108674077,108675785,108677496,108684215,108686444,108687975,108688592,108688822,108690786	108602907,108605438,108608158,108611329,108616657,108624524,108625969,108629176,108633072,108634972,108636708,108637548,108642514,108644781,108646649,108648112,108648962,108651162,108654310,108661972,108662257,108669749,108672656,108674181,108675873,108677598,108684341,108686584,108688096,108688736,108688924,108691387	0.931818
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	32677531	32677578	32677539	+	High_confidence	130	141	472	12.951215	6.438648	chr15	32677294	32677614	LTR?|LTR?|MamRep605	+	chr15	32677559	32697096	MSTRG.8288.7	+	32677559,32679765,32684556,32691709,32696513	32677744,32679915,32684669,32691763,32697096	0.902542
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	114238831	114238832	114238831	+	RAMPAGE_only	9	9	9	0.246951	2.503258	chr13	114238758	114238842	LINE|L2|L2c	+	chr13	114235017	114242675	CDC16|ENST00000494766.5	+	114235017,114236644,114236798,114238989,114239349,114242120	114235132,114236699,114236896,114239028,114239490,114242675	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	9239806	9239876	9239843	+	High_confidence	42	43	268	7.353656	6.963980	chr1	9239801	9239853	LINE|Penelope|Penelope1_Vert	+	chr1	9239843	9271337	H6PD|NM_001282587.1	+	9239843,9244924,9246965,9262058,9263508	9240018,9245561,9247083,9262328,9271337	0.753731
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	222892284	222892305	222892284	+	RAMPAGE_only	3	3	8	0.219512	2.521641	chr1	222892051	222892649	DNA|hAT?|MER99	-	chr1	222872270	222979862	DISP1|ENST00000360254.3	+	222872270,222928429,222942806,222979622	222872432,222928570,222943332,222979862	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	111417844	111417845	111417844	-	RAMPAGE_only	7	9	10	0.274390	2.725481	chr1	111417677	111418000	LTR|ERVL|LTR40A1	-	chr1	111415219	111416679	OVGP1|ENST00000494622.1	-	111415219,111416322	111415344,111416679	0.700000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	111192139	111192148	111192139	-	RAMPAGE_only	2	2	8	0.219512	2.521641	chr1	111191905	111192139	SINE|MIR|MIRb	-	chr1	111187173	111189328	DENND2D|ENST00000468692.1	-	111187173,111188130,111188701,111189211	111187681,111188370,111188786,111189328	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	101466874	101466901	101466900	-	RAMPAGE_only	7	7	30	0.823170	4.582119	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.966667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	43013350	43013393	43013392	-	High_confidence	7	7	19	0.521341	4.142664	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.947368
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	151369291	151369292	151369291	-	High_confidence	4	6	6	0.164634	2.584963	chr1	151369225	151369333	DNA|hAT-Tip100|MER91A	-	chr1	151369067	151370285	SELENBP1|ENST00000427867.2	-	151369067,151369441,151369712,151370200	151369189,151369554,151369769,151370285	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	114059117	114059118	114059117	-	High_confidence	22	22	22	0.603658	3.845351	chrX	114059021	114059467	LTR|ERV1|LTR2	-	chrX	113961710	114059289	XACT|ENST00000649506.1	-	113961710,114042367,114059003	113963599,114042484,114059289	0.545455
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	159769619	159769779	159769619	-	RAMPAGE_only	12	13	68	1.865853	4.604845	chr2	159769360	159769643	SINE|Alu|AluSx1	+	chr2	159768852	159798242	CD302|ENST00000259053.5	-	159768852,159777937,159780004,159780881,159783358,159798131	159772053,159777964,159780178,159780998,159783469,159798242	0.941176
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	56056318	56056412	56056411	+	RAMPAGE_only	9	9	35	0.960366	4.712319	chr7	56056444	56056752	SINE|Alu|AluSq2	+	chr7	56051684	56063989	CCT6A|NM_001009186.1	+	56051684,56052421,56055623,56056310,56057992,56058361,56058619,56059543,56060268,56060806,56061746,56062682,56063012	56051985,56052485,56055797,56056414,56058103,56058521,56058702,56059640,56060416,56060940,56061849,56062755,56063989	0.914286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	96895132	96895162	96895132	-	High_confidence	1161	1190	1905	52.271323	6.400660	chr2	96894981	96895398	LINE|L1|L1MC5a	-	chr2	96876025	96895142	FAM178B|ENST00000470789.5	-	96876025,96877889,96878415,96893925,96895060	96876308,96878042,96878493,96894051,96895142	0.920210
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	19488608	19488628	19488608	+	RAMPAGE_only	11	14	23	0.631097	4.142915	chr16	19488468	19488935	LINE|L2|L2a	+	chr16	19486940	19498277	TMC5|ENST00000574033.1	+	19486940,19490394,19492149,19494261,19497120,19497919	19487020,19490568,19492228,19494366,19497163,19498277	0.913043
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	159681543	159681582	159681581	-	RAMPAGE_only	4	4	16	0.439024	3.750000	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	73414825	73414852	73414825	+	RAMPAGE_only	2	2	13	0.356707	3.546594	chr4	73414754	73414918	SINE|MIR|MIR	-	chr4	73413573	73415395	ALB|ENST00000504043.1	+	73413573,73415034	73413634,73415395	0.769231
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	65601853	65601900	65601853	+	RAMPAGE_only	3	3	19	0.521341	3.947703	chr1	65601809	65601923	SINE|MIR|MIR1_Amn	-	chr1	65565545	65626234	LEPR|ENST00000371058.1	+	65565545,65570472,65572325,65592656,65596447,65598659,65601391,65601842,65605037,65608752,65609946,65610213,65616007,65617963,65619927,65621352,65622905,65626122	65565605,65570802,65572449,65592865,65596593,65598804,65601682,65601960,65605237,65608901,65610106,65610296,65616224,65618146,65620023,65621458,65622981,65626234	0.894737
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	128905272	128905324	128905291	+	RAMPAGE_only	4	4	26	0.713414	4.363713	chr12	128905189	128905299	DNA|hAT-Charlie|Charlie5	-	chr12	128864135	128983739	GLT1D1|ENST00000537468.1	+	128864135,128875913,128888638,128899235,128906906,128912423,128914932,128926358,128927104,128945325,128947337,128957544,128982928	128864179,128876062,128888744,128899287,128906954,128912460,128914989,128926454,128927154,128945369,128947458,128957643,128983739	0.884615
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	227339331	227339356	227339355	+	High_confidence	28	28	78	2.140243	5.847765	chr2	227339254	227339802	LTR|ERVL-MaLR|MLT1G3	-	chr2	227340291	227357381	MFF|ENST00000456345.1	+	227340291,227347225,227355676,227356985	227340380,227347384,227355761,227357381	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	8600704	8600720	8600707	+	High_confidence	4	4	15	0.411585	3.106891	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.866667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	16712889	16712959	16712958	-	High_confidence	8	8	49	1.344512	5.078696	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16587998	16712979	CTPS2|NM_019857.4	-	16587998,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712979	0.897959
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	64817578	64817600	64817578	-	High_confidence	2	2	8	0.219512	3.000000	chr8	64817241	64817838	DNA|hAT-Charlie|Charlie2b	-	chr8	64801235	64817573	AC104232.1|ENST00000522106.5	-	64801235,64802367,64804172,64805588,64817323	64801526,64802485,64804278,64805698,64817573	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	1962060	1962074	1962060	-	RAMPAGE_only	4	6	12	0.329268	3.251629	chr12	1961963	1962446	LTR|ERVL|MER74B	-	chr12	1952776	1966141	DCP1B|ENST00000536665.5	-	1952776,1955431,1965557,1966079	1953288,1955560,1965693,1966141	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	27525736	27525746	27525745	+	High_confidence	6	7	19	0.521341	3.905765	chr1	27525728	27525810	LINE|L2|L2b	+	chr1	27525804	27530561	BX293535.1|ENST00000443579.1	+	27525804,27530359	27525885,27530561	0.526316
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	2867850	2867857	2867850	+	High_confidence	2	2	7	0.192073	2.807355	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	114059157	114059191	114059157	-	High_confidence	9	11	43	1.179878	4.961148	chrX	114059021	114059467	LTR|ERV1|LTR2	-	chrX	113961710	114059289	XACT|ENST00000649506.1	-	113961710,114042367,114059003	113963599,114042484,114059289	0.697674
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	6702729	6702733	6702730	-	RAMPAGE_only	6	9	16	0.439024	3.189898	chr19	6702615	6702750	SINE|Alu|AluSz	+	chr19	6696613	6697715	C3|ENST00000594005.1	-	6696613,6697343	6696659,6697715	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	20227523	20227611	20227598	+	RAMPAGE_only	2	2	17	0.466463	3.702820	chr17	20227633	20227880	SINE|Alu|AluSx1	+	chr17	20205795	20237148	SPECC1|ENST00000584527.1	+	20205795,20227412,20231757,20232199,20236859	20205912,20227620,20231831,20232451,20237148	0.588235
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	186260189	186260195	186260194	+	RAMPAGE_only	13	14	33	0.905487	4.801970	chr4	186259848	186260334	DNA|hAT-Charlie|MER1A	-	chr4	186265944	186288780	F11|ENST00000403665.6	+	186265944,186267135,186271608,186273070,186274115,186275786,186276230,186280011,186280222,186280473,186284091,186285637,186286414,186287683,186288452	186266295,186267191,186271771,186273177,186274275,186275896,186276390,186280121,186280385,186280580,186284260,186285813,186286510,186287823,186288780	0.878788
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	18063197	18063216	18063197	-	High_confidence	2	2	7	0.192073	2.807355	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	6038937	6038938	6038937	-	RAMPAGE_only	8	8	8	0.219512	2.750000	chr7	6038832	6038901	LINE|L2|L2c	-	chr7	6017427	6059175	MSTRG.22795.1	-	6017427,6022786,6024708,6026727,6028614,6028917,6037423,6038559,6040891,6042932,6044561,6046070,6046991,6048806,6049911,6054545,6058965	6019313,6023746,6024801,6026961,6028697,6029032,6037524,6038671,6041219,6042993,6044661,6046151,6047091,6048844,6050045,6054704,6059175	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	32477567	32477583	32477567	+	RAMPAGE_only	4	4	8	0.219512	2.750000	chr2	32477616	32477749	SINE|Alu|AluJb	+	chr2	32436074	32611581	MSTRG.14435.6	+	32436074,32439507,32441328,32442064,32442323,32443490,32445520,32448794,32453807,32463193,32464508,32465064,32467524,32467902,32468436,32469394,32470167,32471013,32476212,32477367,32478634,32479461,32481319,32482428,32485642,32487646,32488587,32490040,32491424,32493539,32499546,32501712,32502794,32503041,32505004,32507979,32509737,32510525,32512932,32514989,32518253,32518816,32524887,32525463,32529650,32531354,32543240,32545642,32547849,32549312,32575155,32593914,32595033,32597750,32599738,32603005,32607454,32611447	32436184,32439686,32441462,32442226,32442455,32443588,32445668,32448928,32453954,32463381,32464823,32465164,32467739,32468111,32468783,32469614,32470301,32473239,32476344,32477583,32478818,32479617,32481453,32482582,32485759,32487801,32488714,32490151,32491558,32493667,32500109,32501888,32502891,32503236,32505205,32508259,32509994,32510634,32513154,32515770,32518397,32518946,32525019,32525628,32529824,32531551,32543541,32545860,32548014,32549481,32575366,32594060,32595144,32597968,32599900,32603083,32607643,32611581	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	154565060	154565113	154565101	+	RAMPAGE_only	2	3	13	0.356707	3.392747	chr4	154565068	154565287	SINE|MIR|MIR	-	chr4	154563010	154566522	FGB|ENST00000498375.2	+	154563010,154565185,154566488	154563132,154565999,154566522	0.923077
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	3111645	3111675	3111653	+	RAMPAGE_only	2	3	10	0.274390	3.169925	chr4	3111496	3112202	LINE|L1|HAL1	-	chr4	3115328	3121712	HTT|ENST00000506137.1	+	3115328,3116084,3121227	3115445,3116263,3121712	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	27229135	27229136	27229135	-	RAMPAGE_only	5	6	8	0.219512	2.521641	chr16	27229101	27229466	LINE|L2|L2b	+	chr16	27225024	27268741	NSMCE1|ENST00000565070.5	-	27225024,27225725,27233000,27234187,27235177,27257434,27268705	27225236,27226836,27233147,27234265,27235299,27257581,27268741	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	67304593	67304594	67304593	+	RAMPAGE_only	6	6	6	0.164634	2.584963	chr7	67304465	67304758	SINE|Alu|AluY	-	chr7	67305986	67309715	STAG3L4|ENST00000352103.6	+	67305986,67308576,67308934,67309563	67306083,67308652,67309139,67309715	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	67575415	67575436	67575415	+	RAMPAGE_only	2	2	6	0.164634	2.584963	chr15	67574894	67575432	LINE|L2|L2c	-	chr15	67585741	67807083	MAP2K5|ENST00000558392.5	+	67585741,67586845,67592925,67600684,67630887,67646230,67646387,67658552,67664596,67692478,67693517,67703336,67727915,67748230,67748568,67769601,67772706,67806645	67585930,67586913,67592974,67600749,67630927,67646299,67646469,67658614,67664645,67692552,67693568,67703408,67727945,67748257,67748601,67769663,67772752,67807083	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	965067	965073	965072	+	RAMPAGE_only	4	4	8	0.219512	2.500000	chr19	965094	965170	SINE|MIR|MIR3	+	chr19	966786	968795	ARID3A|ENST00000590749.2	+	966786,968404	966868,968795	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrY	4036475	4036502	4036475	+	High_confidence	7	8	33	0.905487	3.964046	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	0.939394
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	187021850	187021911	187021851	+	High_confidence	55	90	176	4.829267	5.329875	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.977273
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	114705716	114705839	114705716	-	RAMPAGE_only	27	28	143	3.923779	4.138518	chr1	114705629	114705788	SINE|Alu|AluSx3	-	chr1	114704463	114716894	NRAS|NM_002524.4	-	114704463,114708153,114708530,114709568,114713799,114716049,114716657	114708050,114708192,114708654,114709728,114713978,114716177,114716894	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	104767175	104767249	104767206	+	High_confidence	11	12	53	1.454268	5.027554	chr14	104766824	104767423	LTR|ERV1|LTR71B	-	chr14	104767175	104768706	MSTRG.8150.9	+	104767175,104767863,104768391	104767267,104768007,104768706	0.849057
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	30812434	30812459	30812453	-	High_confidence	8	8	41	1.125000	4.753056	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.975610
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	89479889	89479890	89479889	-	High_confidence	108	108	110	3.018292	4.332651	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	0.954545
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	58943646	58943665	58943664	+	High_confidence	3	3	13	0.356707	3.026987	chr11	58943541	58944242	LTR|ERV1|MER57-int	+	chr11	58943370	58955334	GLYATL1|ENST00000524881.5	+	58943370,58943542,58947045,58947857,58954769,58955175	58943460,58943666,58947165,58947965,58954896,58955334	0.923077
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	14374040	14374062	14374040	+	High_confidence	2	2	8	0.219512	2.521641	chr17	14373785	14374201	LTR|ERVL|LTR16C	-	chr17	14374138	14421026	AC022816.1|ENST00000436469.1	+	14374138,14377283,14382017,14397061,14420656	14374228,14377421,14382112,14397172,14421026	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	111097312	111097338	111097312	-	High_confidence	2	2	10	0.274390	3.321928	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	2972329	2972355	2972354	-	RAMPAGE_only	11	11	23	0.631097	3.754442	chr11	2972339	2972686	LINE|L1|L1M5	+	chr11	2971449	2989268	NAP1L4|ENST00000530064.5	-	2971449,2972101,2976023,2978283,2979206,2983745,2989128	2971534,2972243,2976123,2978342,2979237,2983813,2989268	0.826087
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	75891300	75891305	75891304	+	RAMPAGE_only	3	3	7	0.192073	2.807355	chr6	75891350	75891661	SINE|Alu|AluY	+	chr6	75817523	75915177	MYO6|ENST00000627432.2	+	75817523,75822781,75828539,75830415,75832841,75835900,75840584,75841213,75844896,75848350,75855138,75857096,75858901,75861022,75862595,75866525,75866931,75870646,75873206,75879819,75880042,75881688,75886003,75886843,75890056,75891227,75892529,75894813,75895230,75898372,75907604,75908495,75911671,75914062,75914812	75817664,75822851,75828613,75830545,75832947,75835956,75840682,75841378,75844977,75848531,75855283,75857254,75858993,75861095,75862723,75866621,75867105,75870685,75873300,75879950,75880120,75881818,75886094,75886994,75890265,75891306,75892690,75894840,75895260,75898411,75907708,75908627,75911698,75914281,75915177	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	147937574	147937596	147937574	+	RAMPAGE_only	6	6	16	0.439024	4.000000	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	MSTRG.26672.20	+	147940580,147943130,147944904,147945533,147948682	147940662,147943326,147945051,147945616,147950315	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	31346150	31346161	31346160	+	RAMPAGE_only	3	3	8	0.219512	2.521641	chr1	31346007	31346373	LINE|L2|L2c	-	chr1	31297035	31364552	ZCCHC17|ENST00000627541.1	+	31297035,31319108,31337174,31338956,31346639,31348828,31364031	31297096,31319166,31337275,31339048,31346818,31348974,31364552	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	132377587	132377633	132377605	-	RAMPAGE_only	13	13	44	1.207317	4.953417	chrX	132377592	132377700	SINE|MIR|MIR1_Amn	+	chrX	132369313	132413575	MBNL3|NM_001170702.1	-	132369313,132382177,132386660,132390846,132392142,132406227,132413482	132379677,132382272,132386811,132391083,132392334,132406392,132413575	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	104909896	104909924	104909896	+	RAMPAGE_only	3	3	16	0.439024	3.875000	chrX	104904301	104910378	LINE|L1|L1PA2	-	chrX	104566314	105767829	IL1RAPL2|ENST00000372582.5	+	104566314,104658894,105195474,105233817,105267387,105484312,105717366,105740545,105748959,105755176,105766963	104567051,104658995,105195748,105234004,105267541,105484387,105717496,105740691,105749103,105755347,105767829	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	104116219	104116263	104116239	+	RAMPAGE_only	6	7	38	1.042683	4.648510	chr9	104116275	104116318	DNA|hAT-Charlie|MER5A	+	chr9	104094563	104139651	SMC2|ENST00000374787.7	+	104094563,104095323,104096147,104098445,104099643,104100092,104100388,104101959,104102423,104111580,104113315,104113963,104114690,104116199,104118170,104120026,104123107,104124911,104126640,104127285,104129644,104132008,104134414,104138017,104139138	104094838,104095552,104096297,104098568,104099682,104100203,104100433,104102193,104102573,104111814,104113475,104114081,104114829,104116319,104118375,104120162,104123232,104125105,104126784,104127480,104129845,104132125,104134575,104138165,104139651	0.868421
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	127765174	127765175	127765174	-	RAMPAGE_only	11	11	12	0.329268	3.459432	chr2	127765110	127765160	LINE|CR1|L3	-	chr2	127701021	127811147	WDR33|ENST00000322313.8	-	127701021,127708676,127709489,127709692,127713582,127717154,127719264,127721835,127722590,127722957,127723252,127724332,127724886,127725060,127726650,127763061,127764827,127765173,127768188,127768932,127770777,127811011	127706552,127708892,127709582,127709856,127714021,127717263,127720353,127721988,127722730,127723044,127723347,127724443,127724965,127725215,127726777,127763159,127764979,127765269,127768293,127769001,127771004,127811147	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	118835953	118835954	118835953	-	High_confidence	6	6	8	0.219512	3.000000	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	17045255	17045282	17045281	-	High_confidence	10	13	44	1.207317	4.754442	chr1	17045024	17045325	LINE|L2|L2c	-	chr1	17023972	17045219	SDHB|ENST00000491274.5	-	17023972,17027748,17028599,17033059,17044760,17045140	17024074,17027865,17028736,17033145,17044888,17045219	0.818182
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	24190681	24190752	24190721	+	RAMPAGE_only	53	64	246	6.749998	6.780510	chrX	24190740	24190933	SINE|MIR|MIRb	+	chrX	24172714	24211986	ZFX|ENST00000338565.3	+	24172714,24179182,24207711,24208217,24208899,24210192	24172800,24179770,24207855,24208370,24209040,24211986	0.800813
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	139364716	139364731	139364716	+	RAMPAGE_only	2	2	8	0.219512	2.521641	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	6057729	6057746	6057745	-	RAMPAGE_only	100	100	162	4.445120	5.999625	chr7	6057659	6057924	SINE|Alu|AluSx1	-	chr7	6046722	6059056	EIF2AK1|ENST00000463213.5	-	6046722,6048806,6049911,6054545,6058965	6047091,6048844,6050045,6054704,6059056	0.759259
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	160100807	160100844	160100843	+	RAMPAGE_only	9	9	44	1.207317	5.186704	chr6	160100808	160101091	SINE|Alu|AluSx	-	chr6	160061630	160106507	IGF2R|ENST00000650503.1	+	160061630,160061752,160062531,160063414,160064400,160064803,160068248,160069867,160071909,160072764,160073212,160073756,160075846,160078200,160079579,160080128,160083949,160084994,160088032,160089915,160096438,160102518,160103745,160104673	160061646,160061928,160062619,160063630,160064531,160064901,160068385,160070058,160072036,160072884,160073469,160073975,160075996,160078362,160079787,160080275,160084184,160085131,160089253,160090103,160096625,160102671,160103815,160106507	0.727273
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	17556545	17556546	17556545	+	High_confidence	5	5	8	0.219512	2.750000	chr19	17556574	17556631	SINE|MIR|MIR	+	chr19	17556560	17568577	COLGALT1|ENST00000600474.1	+	17556560,17559310,17560347,17567405,17568508	17556679,17559421,17560465,17567540,17568577	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	125895226	125895255	125895226	-	RAMPAGE_only	11	11	25	0.685975	4.418296	chr11	125895047	125895200	SINE|Alu|AluSc8	-	chr11	125893484	125896330	PUS3|ENST00000530811.5	-	125893484,125895223,125895906	125894286,125895789,125896330	0.960000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	174410248	174410288	174410287	+	High_confidence	3	6	13	0.356707	3.084963	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.769231
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	82081606	82081705	82081606	-	High_confidence	30	31	127	3.484755	5.417840	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.614173
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	103425074	103425075	103425074	+	RAMPAGE_only	19	21	27	0.740853	3.673270	chr4	103424943	103425102	LTR|Gypsy|LTR81B	+	chr4	103256158	103453658	LINC02428|ENST00000513793.5	+	103256158,103425054,103436934,103453599	103256294,103425185,103437046,103453658	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	41430531	41430549	41430534	+	RAMPAGE_only	2	2	6	0.164634	2.584963	chr21	41429929	41430715	DNA|hAT-Charlie|Charlie2b	+	chr21	41431713	41459214	MX1|ENST00000288383.10	+	41431713,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41432175,41435960,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	224504664	224504687	224504686	+	RAMPAGE_only	2	2	6	0.164634	2.584963	chr1	224504696	224504911	SINE|MIR|MIRb	+	chr1	224513687	224521221	CNIH3|ENST00000496372.1	+	224513687,224515740,224520999	224513780,224515876,224521221	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	71417089	71417111	71417110	+	RAMPAGE_only	2	2	8	0.219512	2.807355	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	45000266	45000292	45000283	+	High_confidence	19	19	87	2.387194	5.772024	chr10	45000000	45000445	LINE|L2|L2	-	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.540230
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	56367491	56367791	56367491	+	RAMPAGE_only	32	33	392	10.756094	5.715082	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	0.994898
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	92939429	92939477	92939429	+	High_confidence	2	2	12	0.329268	3.084963	chr15	92939359	92939489	DNA|hAT-Charlie|MER5A	+	chr15	92939653	92949228	CHD2|ENST00000637613.1	+	92939653,92941821,92942842,92944414,92945820,92946037,92946247,92948951	92939718,92941955,92943068,92944515,92945865,92946082,92946340,92949228	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	106716703	106716704	106716703	+	RAMPAGE_only	17	17	25	0.685975	3.199082	chrX	106716671	106716865	LINE|L2|L2c	-	chrX	106726663	106796993	RNF128|ENST00000255499.2	+	106726663,106772912,106785064,106787917,106790185,106791065,106795579	106727397,106773160,106785136,106788000,106790282,106791234,106796993	0.960000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	208571975	208572063	208571977	+	RAMPAGE_only	62	123	275	7.545729	6.161785	chr2	208571876	208572079	LTR|ERVL-MaLR|MLT1L	+	chr2	208542641	208825587	LOC101927960|NR_136588.1	+	208542641,208572012,208656825,208819551,208824194,208825398	208542991,208572167,208656989,208819655,208824350,208825587	0.614545
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	103129653	103129686	103129682	+	High_confidence	4	4	18	0.493902	3.683542	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	85378112	85378113	85378112	-	High_confidence	161	168	172	4.719511	4.469183	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.965116
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	51795157	51795163	51795162	+	High_confidence	6	9	16	0.439024	3.250000	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	81664346	81664347	81664346	+	RAMPAGE_only	5	5	8	0.219512	2.750000	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	196072905	196073015	196072949	-	RAMPAGE_only	5	5	47	1.289634	4.171454	chr3	196072919	196073244	SINE|Alu|AluSx	+	chr3	196071439	196082090	MSTRG.19056.16	-	196071439,196072002,196072507,196075158,196077063,196082042	196071498,196072152,196074125,196075360,196077122,196082090	0.893617
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	68906924	68906943	68906942	-	High_confidence	11	13	19	0.521341	3.308271	chr4	68905745	68907106	LTR|ERV1|HERV3-int	-	chr4	68901007	68906983	AC021146.12|ENST00000608365.1	-	68901007,68906874	68901375,68906983	0.789474
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	156752100	156752124	156752112	-	High_confidence	5	5	17	0.466463	3.875000	chr1	156752098	156752165	LINE|L2|L2c	-	chr1	156742106	156752232	HDGF|NM_001126051.1	-	156742106,156743651,156744162,156745007,156745296,156752037	156743455,156743878,156744348,156745146,156745373,156752232	0.941176
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	147382877	147382900	147382888	+	High_confidence	3	4	14	0.384146	3.521641	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	196059261	196059292	196059287	-	High_confidence	8	8	25	0.685975	3.207707	chr3	196059034	196059349	SINE|Alu|AluSc	+	chr3	196058210	196058958	TFRC|ENST00000482479.1	-	196058210,196058573	196058365,196058958	0.840000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	109711926	109711936	109711926	-	RAMPAGE_only	3	3	7	0.192073	2.521641	chr4	109711159	109712316	LINE|L1|L1MC3	+	chr4	109709988	109730077	PLA2G12A|ENST00000243501.9	-	109709988,109717547,109718682,109729601	109714495,109717713,109718759,109730077	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	134432417	134432436	134432417	-	High_confidence	4	4	16	0.439024	3.323231	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.812500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	99410041	99410046	99410045	+	High_confidence	3	3	9	0.246951	2.750000	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	160383701	160383708	160383707	-	High_confidence	3	3	7	0.192073	2.584963	chr3	160383467	160383661	DNA|hAT-Charlie|MER5C1	-	chr3	160256991	160383656	IFT80|ENST00000483465.5	-	160256991,160268412,160277305,160277580,160279192,160280666,160282477,160285803,160300882,160303914,160307662,160319759,160356012,160357488,160366042,160375811,160377429,160381502,160383436	160258635,160268536,160277478,160277670,160279364,160280814,160282613,160285868,160301046,160303989,160307781,160319939,160356150,160357578,160366152,160375880,160377540,160381718,160383656	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	181954484	181954526	181954491	+	High_confidence	54	55	254	6.969510	5.784502	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.854331
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	11451698	11451699	11451698	-	RAMPAGE_only	7	7	7	0.192073	2.521641	chr11	11451697	11451900	SINE|MIR|MIRb	-	chr11	11270875	11622005	GALNT18|ENST00000227756.4	-	11270875,11293028,11327085,11332693,11340818,11372514,11377181,11379080,11432620,11448743,11621358	11271290,11293193,11327181,11332831,11341004,11372629,11377379,11379264,11432787,11448936,11622005	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	206056305	206056323	206056305	+	High_confidence	3	3	10	0.274390	3.121928	chr1	206054885	206058429	LTR|ERV1|Harlequin-int	+	chr1	206056370	206061924	BX571818.1|ENST00000584198.2	+	206056370,206060400,206061344,206061661	206056463,206060449,206061397,206061924	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	129069619	129069653	129069652	+	High_confidence	7	7	26	0.713414	4.546594	chr9	129069599	129069801	SINE|MIR|MIRb	-	chr9	129069258	129072071	MIGA2|ENST00000483458.1	+	129069258,129070246	129069965,129072071	0.923077
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	6529028	6529031	6529028	+	RAMPAGE_only	2	3	7	0.192073	2.807355	chr12	6529076	6529291	SINE|MIR|MIRb	+	chr12	6494131	6531966	NCAPD2|NM_014865.3	+	6494131,6495075,6509716,6510074,6510628,6511109,6514264,6514463,6514772,6516827,6517364,6517595,6517778,6520985,6521797,6522827,6523261,6525582,6526067,6526286,6526447,6526890,6527776,6527967,6528172,6528678,6528944,6529512,6529774,6530690,6530920,6531326	6494154,6495225,6509792,6510133,6510810,6511252,6514392,6514587,6514920,6517025,6517499,6517683,6517959,6521110,6522037,6523002,6523346,6525716,6526200,6526371,6526615,6527063,6527888,6528091,6528328,6528856,6529039,6529593,6529958,6530817,6531076,6531966	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	52913014	52913029	52913014	-	RAMPAGE_only	30	33	88	2.414633	5.559106	chr3	52912917	52913113	DNA|hAT-Charlie|Charlie17a	-	chr3	52899215	53045269	MSTRG.18112.1	-	52899215,52906112,52907068,52907554,52911002,52912537,52913477,52916149,52918483,52920536,52921704,52926030,52928190,52930328,52930940,52932061,52934812,52943352,52954316,52969100,53018085,53019029,53043135,53044945	52905276,52906241,52907314,52907733,52911178,52912647,52913617,52916214,52918526,52920650,52921831,52926113,52928341,52930430,52931035,52932308,52934901,52943593,52954411,52969258,53018228,53019122,53043254,53045269	0.931818
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	20658312	20658347	20658346	+	High_confidence	22	26	87	2.387194	5.416171	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658315	20995955	MSTRG.25127.2	+	20658315,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.689655
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	2623581	2623624	2623612	-	High_confidence	3	3	12	0.329268	3.027169	chr8	2623456	2623761	LINE|L1|L1M2	+	chr8	2589984	2623382	AC245123.1|ENST00000612422.1	-	2589984,2595564,2596624,2604780,2623294	2591249,2595700,2596704,2604930,2623382	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	4173250	4173253	4173250	+	RAMPAGE_only	3	3	7	0.192073	2.521641	chr20	4173099	4173644	LINE|L1|L1ME3	-	chr20	4171709	4187747	SMOX|ENST00000379460.6	+	4171709,4175029,4177350,4181802,4182088,4183493,4187269	4171905,4175263,4177577,4181976,4182848,4183654,4187747	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	47420632	47420701	47420632	-	RAMPAGE_only	6	8	28	0.768292	4.083617	chr11	47420478	47420646	SINE|MIR|MIRb	+	chr11	47418768	47426266	PSMC3|ENST00000602866.5	-	47418768,47419115,47420263,47420630,47422573,47422829,47424045,47424428,47424606,47425120,47425866,47426204	47418945,47419197,47420409,47420727,47422722,47422973,47424183,47424491,47424711,47425246,47425950,47426266	0.964286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	123179193	123179221	123179220	-	RAMPAGE_only	5	5	15	0.411585	3.240224	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.933333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	58377952	58377953	58377952	-	RAMPAGE_only	13	13	13	0.356707	3.085055	chr3	58377660	58378426	LINE|L1|HAL1	+	chr3	58192626	58214697	DNASE1L3|ENST00000483681.5	-	58192626,58197820,58200996,58204768,58205470,58208217,58210765,58214107,58214301	58193439,58197978,58201109,58204881,58205560,58208306,58211003,58214196,58214697	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	9511132	9511159	9511158	+	RAMPAGE_only	3	3	9	0.246951	2.947703	chr11	9511102	9511285	SINE|Alu|AluSp	-	chr11	9512496	9525479	ZNF143|ENST00000447186.1	+	9512496,9516200,9525239	9512596,9516362,9525479	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	39387780	39387801	39387780	+	RAMPAGE_only	267	307	800	21.951212	6.734361	chr3	39387553	39387832	LINE|L2|L2	-	chr3	39384431	39397012	SLC25A38|ENST00000643672.1	+	39384431,39389494,39390422,39391440,39391852,39394409,39396397	39384705,39389616,39390507,39391620,39392021,39394576,39397012	0.562500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	60182527	60182551	60182550	-	High_confidence	11	11	26	0.713414	4.501629	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.538462
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	115739041	115739045	115739043	+	High_confidence	3	6	9	0.246951	3.000000	chr5	115738242	115739340	LTR|ERV1|MER57A-int	-	chr5	115738977	115756527	AC008549.1|ENST00000512900.2	+	115738977,115739359,115755390	115739114,115739507,115756527	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31887192	31887217	31887216	-	High_confidence	3	3	8	0.219512	3.000000	chr12	31887197	31887704	LTR|ERV1|LOR1a	+	chr12	31876968	31887203	LOC105369723|NR_135029.1	-	31876968,31887166	31877893,31887203	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	81427176	81427179	81427176	-	High_confidence	2	2	7	0.192073	2.584963	chr14	81426946	81427161	SINE|MIR|MIR	-	chr14	81260649	81427212	STON2|NM_033104.3	-	81260649,81276900,81370987,81395893,81398294,81427101	81270872,81278739,81371185,81396178,81398580,81427212	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	240022172	240022269	240022172	-	RAMPAGE_only	17	17	79	2.167682	3.151335	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.962025
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	7266501	7266502	7266501	+	RAMPAGE_only	9	9	12	0.329268	3.584963	chr6	7266135	7266589	LTR|ERVL|LTR41	+	chr6	7276030	7298872	AL139095.4|ENST00000379928.4	+	7276030,7285822,7298584	7276168,7285896,7298872	0.583333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	31345887	31345943	31345935	+	RAMPAGE_only	6	7	37	1.015244	4.843569	chr1	31345585	31345961	LTR|ERVL-MaLR|MSTA	-	chr1	31297035	31364552	ZCCHC17|ENST00000627541.1	+	31297035,31319108,31337174,31338956,31346639,31348828,31364031	31297096,31319166,31337275,31339048,31346818,31348974,31364552	0.837838
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	62305536	62305543	62305536	+	High_confidence	3	3	9	0.246951	2.641604	chr12	62304513	62305696	LINE|L1|L1MEg	+	chr12	62305594	62325933	USP15|ENST00000546694.1	+	62305594,62314789,62321463,62325871	62306058,62314916,62321609,62325933	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	126327874	126327910	126327874	+	High_confidence	17	29	125	3.429877	5.817114	chr11	126327772	126328221	LINE|L2|L2a	-	chr11	126327865	126345754	DCPS|ENST00000648516.1	+	126327865,126328744,126330193,126331404,126338285,126343306,126345346	126328057,126328888,126330436,126331550,126338399,126343417,126345754	0.768000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	152243809	152243848	152243809	+	High_confidence	8	16	48	1.317073	4.611441	chr3	152243797	152244104	SINE|Alu|AluSx1	-	chr3	152243827	152300110	MBNL1|ENST00000477171.1	+	152243827,152244320,152299404	152244040,152244440,152300110	0.812500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	12927723	12927741	12927733	+	High_confidence	90	91	190	5.213413	6.965677	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.610526
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	146111439	146111456	146111455	-	RAMPAGE_only	10	10	29	0.795731	3.507127	chr3	146111310	146111537	SINE|MIR|MIR	+	chr3	146070180	146160992	PLOD2|ENST00000494950.5	-	146070180,146071041,146071276,146072560,146073286,146076781,146077861,146079115,146081737,146085168,146086786,146088585,146091799,146102754,146104278,146106531,146110284,146121111,146124137,146160788	146070872,146071167,146071423,146072665,146073352,146076895,146077924,146079257,146081863,146085273,146086908,146088711,146091901,146102852,146104342,146106644,146110448,146121248,146124229,146160992	0.965517
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	99496771	99496793	99496779	-	High_confidence	4	4	9	0.246951	3.000000	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	50172571	50172590	50172589	+	High_confidence	4	4	11	0.301829	2.721928	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172589	50176671	LINC01273|ENST00000411453.2	+	50172589,50172922,50176280	50172788,50173017,50176671	0.636364
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	29197906	29197907	29197906	+	High_confidence	12	12	13	0.356707	3.584963	chr7	29197662	29197998	LINE|L2|L2b	-	chr7	29197740	29514335	CHN2|NM_001293072.1	+	29197740,29354624,29367931,29393678,29398372,29400542,29480278,29495951,29499866,29504743,29507227,29509300,29512563	29197983,29354663,29367987,29393710,29398486,29400828,29480356,29496036,29500040,29504821,29507365,29509406,29514335	0.846154
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	180096166	180096167	180096166	+	RAMPAGE_only	4	5	7	0.192073	2.807355	chr1	180096189	180096346	LINE|L2|L2c	+	chr1	180093713	180113380	CEP350|ENST00000417046.1	+	180093713,180095522,180096037,180098862,180110996,180112436	180094616,180095930,180096184,180098985,180111195,180113380	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	69051091	69051092	69051091	+	High_confidence	5	5	7	0.192073	2.584963	chr4	69050859	69051337	LTR|ERV1|LTR2B	+	chr4	69051362	69108227	UGT2B7|ENST00000502942.5	+	69051362,69089471,69098539,69102806,69107174,69108102	69051602,69089603,69098688,69102938,69107262,69108227	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	67231038	67231123	67231038	-	RAMPAGE_only	6	6	40	1.097561	4.050159	chr10	67230665	67236674	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	7137085	7137110	7137097	+	RAMPAGE_only	8	8	23	0.631097	4.262692	chr12	7137127	7137213	SINE|MIR|MIR1_Amn	+	chr12	7138681	7143198	CLSTN3|ENST00000544584.1	+	7138681,7141241,7142085,7142868,7143162	7138816,7141404,7142139,7143026,7143198	0.869565
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	59858462	59858514	59858513	+	RAMPAGE_only	4	6	19	0.521341	4.037401	chr1	59858543	59858716	SINE|Alu|AluJr	+	chr1	59815171	59873007	HOOK1|ENST00000465876.5	+	59815171,59821857,59828779,59832162,59833404,59835344,59836872,59840307,59843431,59847044,59848314,59849072,59858427,59858984,59860187,59862783,59865871,59868249,59871041,59872794	59815351,59821943,59828852,59832213,59833537,59835412,59836935,59840391,59843598,59847185,59848516,59849183,59858515,59859045,59860328,59862877,59865972,59868351,59871110,59873007	0.684211
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100831649	100832049	100831869	+	High_confidence	131	137	1416	38.853645	6.698969	chr14	100831770	100831895	SINE|MIR|MIRb	+	chr14	100832063	100836223	MEG3|ENST00000521812.1	+	100832063,100836166	100832641,100836223	0.651836
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	56737904	56737906	56737905	-	High_confidence	477	924	1314	36.054866	7.865650	chr15	56737845	56738254	LTR|ERVL-MaLR|MLT1J2	+	chr15	56652489	56737917	MSTRG.8697.9	-	56652489,56658423,56666394,56666799,56668822,56676669,56677573,56678663,56682253,56689040,56689299,56693097,56700932,56701172,56704120,56707081,56707262,56737822	56654503,56658486,56666535,56666986,56668957,56676816,56677674,56678821,56682477,56689150,56689470,56693215,56701072,56701238,56704267,56707143,56707306,56737917	0.684932
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	20018045	20018072	20018045	+	RAMPAGE_only	5	5	14	0.384146	3.700440	chr17	20018025	20018396	LINE|L1|HAL1ME	-	chr17	20009378	20232405	MSTRG.10992.6	+	20009378,20017986,20096630,20110426,20204332,20227412,20231757,20232199	20009424,20018102,20096798,20110562,20205912,20227620,20231831,20232405	0.642857
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	6702625	6702663	6702632	-	RAMPAGE_only	7	7	56	1.536585	4.479878	chr19	6702615	6702750	SINE|Alu|AluSz	+	chr19	6696613	6697715	C3|ENST00000594005.1	-	6696613,6697343	6696659,6697715	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65431825	65431862	65431854	+	RAMPAGE_only	7	7	24	0.658536	4.022055	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422799	65445488	MSTRG.4447.4	+	65422799,65423294,65437240,65444287,65445449	65423212,65437184,65444263,65445407,65445488	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	6054548	6054656	6054548	-	RAMPAGE_only	22	28	267	7.326217	5.225676	chr7	6054207	6054503	SINE|Alu|AluSx1	-	chr7	6040958	6059164	MSTRG.22795.5	-	6040958,6042932,6044561,6046070,6046776,6048806,6049911,6054545,6058965	6041219,6042993,6044661,6046151,6047091,6048844,6050045,6054704,6059164	0.977528
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	1655409	1655474	1655409	-	RAMPAGE_only	20	23	48	1.317073	5.202804	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	137218725	137218726	137218725	-	High_confidence	8	10	12	0.329268	3.277613	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	40657076	40657130	40657129	+	RAMPAGE_only	9	10	30	0.823170	4.582119	chr15	40657015	40657149	LINE|L2|L2	+	chr15	40623131	40664339	KNL1|ENST00000526913.5	+	40623131,40628069,40628610,40629272,40640911,40644996,40645655,40646986,40650300,40650543,40651470,40652004,40654908,40657041,40657354,40659338,40662073,40663334	40625640,40628208,40628678,40629371,40641027,40645087,40645772,40647074,40650378,40650583,40651572,40652105,40654977,40657151,40657473,40659461,40662683,40664339	0.966667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	150137405	150137406	150137405	-	High_confidence	15	15	22	0.603658	3.653757	chr5	150137246	150137416	SINE|MIR|MIR3	+	chr5	150134856	150137437	PDGFRB|ENST00000517957.1	-	150134856,150135554,150137007,150137399	150135016,150135878,150137053,150137437	0.818182
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100906941	100906994	100906993	+	High_confidence	2	2	10	0.274390	2.947703	chr14	100906842	100907021	SINE|MIR|MIRb	-	chr14	100906043	100947076	MSTRG.8059.73	+	100906043,100906935,100913431,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100906163,100910304,100931545,100936310,100937488,100938956,100940450,100942838,100944925,100947076	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	61713004	61713026	61713004	+	RAMPAGE_only	6	6	12	0.329268	3.277613	chr15	61712943	61713020	SINE|MIR|MIRb	+	chr15	61729849	61731389	LINC02349|ENST00000561386.1	+	61729849,61730581	61730004,61731389	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	108889849	108889877	108889849	-	RAMPAGE_only	13	15	37	1.015244	4.800432	chr9	108889530	108889941	DNA|TcMar-Tigger|MamRep137	-	chr9	108867516	108893083	ELP1|ENST00000495759.5	-	108867516,108874894,108875632,108877994,108878622,108879445,108880051,108881704,108882124,108889331,108891202,108892985	108869182,108874970,108875735,108878149,108878750,108879557,108880165,108881765,108882187,108889393,108891404,108893083	0.864865
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	39809803	39809865	39809858	-	High_confidence	13	23	61	1.673780	4.545766	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.836066
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	150457322	150457350	150457322	+	RAMPAGE_only	2	2	8	0.219512	2.807355	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150364710	150473556	RPRD2|ENST00000369068.4	+	150364710,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150364919,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	241235121	241235130	241235121	-	RAMPAGE_only	3	3	10	0.274390	2.646439	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241230774	241236664	HDLBP|ENST00000470482.5	-	241230774,241233819,241235120,241235489,241236614	241230944,241233963,241235275,241235594,241236664	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	10379712	10379733	10379712	-	High_confidence	4	4	13	0.356707	3.238901	chr19	10379599	10379809	SINE|MIR|MIRb	+	chr19	10368328	10380510	TYK2|ENST00000530829.1	-	10368328,10369756,10378213,10379614,10380379	10368418,10369877,10378426,10379779,10380510	0.769231
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	20444902	20444921	20444920	+	RAMPAGE_only	3	3	8	0.219512	2.500000	chr6	20444937	20445016	LINE|L2|L2a	+	chr6	20403678	20493714	E2F3|ENST00000535432.2	+	20403678,20479845,20481223,20482761,20486688,20488112,20490167	20403832,20479957,20481425,20482920,20486803,20488248,20493714	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	69237157	69237183	69237176	-	RAMPAGE_only	4	4	23	0.631097	4.349649	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69197714	69320944	FRMD4B|ENST00000470070.6	-	69197714,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69320888	69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69320944	0.521739
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	47217287	47217536	47217287	-	RAMPAGE_only	183	185	406	11.140240	5.560126	chr1	47217097	47217386	SINE|Alu|AluJr	+	chr1	47216291	47229771	TAL1|ENST00000294339.3	-	47216291,47224003,47225442,47229195	47220174,47224098,47225889,47229771	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	28238955	28238971	28238955	-	RAMPAGE_only	2	2	6	0.164634	2.584963	chr17	28238844	28239339	LTR|ERV1|LTR2C	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	63850056	63850069	63850056	-	High_confidence	47	49	132	3.621950	5.857644	chr15	63849966	63850247	SINE|Alu|AluJr	+	chr15	63775187	63850071	MSTRG.8815.18	-	63775187,63780461,63845143,63849988	63775649,63780552,63845236,63850071	0.704545
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	190615287	190615319	190615287	+	High_confidence	245	298	496	13.609751	7.104780	chr3	190615239	190615307	DNA|TcMar-Tigger|Tigger16b	+	chr3	190615307	190629732	IL1RAP|ENST00000412080.1	+	190615307,190620274,190623343,190627322,190629349	190615354,190620440,190623415,190627449,190629732	0.792339
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	157276416	157276441	157276440	+	RAMPAGE_only	3	3	7	0.192073	2.807355	chr1	157275503	157279383	LTR|ERV1|HERVFH21-int	-	chr1	157280715	157283068	AL138900.3|ENST00000607010.1	+	157280715,157282577	157280853,157283068	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	11201309	11201319	11201309	-	RAMPAGE_only	5	6	17	0.466463	3.734522	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	30152541	30152955	30152541	-	RAMPAGE_only	25	26	468	12.841459	5.655372	chr6	30152380	30152600	DNA|TcMar-Tigger|Tigger19b	-	chr6	30151944	30160934	TRIM10|ENST00000449742.6	-	30151944,30155726,30156938,30157368,30158398,30159149,30160429	30154486,30155759,30157054,30157391,30158629,30159245,30160934	0.993590
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	105053062	105053092	105053062	+	RAMPAGE_only	10	13	40	1.097561	4.839776	chr2	105052941	105053063	SINE|Alu|AluJr	-	chr2	105038024	105099960	MRPS9|NM_182640.2	+	105038024,105049170,105071312,105071458,105079982,105088983,105089919,105092400,105093529,105097154,105099669	105038227,105049350,105071375,105071489,105080062,105089069,105089995,105092569,105093638,105097324,105099960	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	192986933	192986960	192986942	-	RAMPAGE_only	7	8	22	0.603658	3.535175	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192935795	192957713	AL390957.1|ENST00000647436.1	-	192935795,192957303	192935903,192957713	0.636364
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	109250785	109250795	109250785	+	RAMPAGE_only	3	3	8	0.219512	2.521641	chr6	109245218	109251251	LINE|L1|L1PA2	-	chr6	109236613	109270514	LOC100996634|NM_001277339.1	+	109236613,109239327,109242178,109254447,109255370,109257545,109261888,109264800,109267807,109270038	109236780,109239520,109242306,109254648,109255492,109257774,109262091,109264956,109267901,109270514	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	36002033	36002114	36002113	-	High_confidence	30	39	76	2.085365	5.754378	chr17	36001935	36002541	LTR|ERV1|MER50	-	chr17	35983655	36002038	CCL15-CCL14|NR_027921.3	-	35983655,35984337,35985747,35986570,35997720,35998279,35998865,36001416	35983888,35984452,35985795,35986704,35997860,35998391,35998925,36002038	0.986842
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	20017096	20017145	20017144	+	High_confidence	22	22	46	1.262195	4.452500	chr17	20016290	20017558	LTR|ERV1|LTR12C	+	chr17	20017144	20096715	SPECC1|ENST00000582604.1	+	20017144,20017986,20096630	20017605,20018102,20096715	0.956522
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100933045	100933057	100933045	+	RAMPAGE_only	4	4	14	0.384146	3.392747	chr14	100932604	100933608	LINE|L1|L1MC1	-	chr14	100906043	100947076	MSTRG.8059.73	+	100906043,100906935,100913431,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100906163,100910304,100931545,100936310,100937488,100938956,100940450,100942838,100944925,100947076	0.928571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	41656742	41656849	41656848	+	High_confidence	9	9	41	1.125000	4.997677	chr22	41656682	41656850	LTR|ERVL|LTR50	-	chr22	41656952	41661699	XRCC6|ENST00000478914.1	+	41656952,41658251,41661330	41657032,41658352,41661699	0.756098
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	9775633	9775676	9775675	+	High_confidence	101	112	618	16.957311	7.402965	chr11	9775466	9776058	LTR|ERVL|MER21C	+	chr11	9775730	9808379	SBF2-AS1|ENST00000534671.1	+	9775730,9780375,9807847	9775765,9780575,9808379	0.660194
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	52783240	52783338	52783337	+	RAMPAGE_only	7	10	87	2.387194	5.697037	chr3	52783352	52783441	LINE|CR1|L3	+	chr3	52784411	52792033	ITIH1|ENST00000428133.5	+	52784411,52785043,52786294,52786944,52787591,52787985,52788231,52789652,52790748,52791516,52791781	52784477,52785229,52786434,52787114,52787612,52788066,52788345,52789854,52790921,52791628,52792033	0.954023
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	41430577	41430586	41430585	+	RAMPAGE_only	7	7	15	0.411585	3.378783	chr21	41429929	41430715	DNA|hAT-Charlie|Charlie2b	+	chr21	41431713	41459214	MX1|ENST00000288383.10	+	41431713,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41432175,41435960,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	0.933333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	98891255	98891330	98891329	-	High_confidence	7	12	38	1.042683	4.839776	chr4	98891322	98891802	LINE|L1|L1MB2	+	chr4	98881009	98890898	EIF4E|ENST00000505194.5	-	98881009,98884921,98887078,98887888,98890786	98881142,98885061,98887192,98887952,98890898	0.736842
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	53621272	53621291	53621290	+	RAMPAGE_only	9	9	25	0.685975	4.293661	chr6	53621183	53621472	LINE|L1|L1M6	+	chr6	53628379	53631394	LINC01564|NR_125841.1	+	53628379,53628574,53631012	53628446,53628691,53631394	0.600000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	29376379	29376394	29376393	+	RAMPAGE_only	7	8	14	0.384146	3.664498	chr7	29376417	29376587	DNA|hAT-Charlie|MER5A	+	chr7	29396647	29401281	CHN2|ENST00000491856.1	+	29396647,29400542	29398486,29401281	0.642857
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	59209387	59209393	59209392	+	High_confidence	6	6	13	0.356707	3.418296	chr17	59209373	59209528	SINE|Alu|AluSx3	-	chr17	59209399	59215239	SMG8|ENST00000543872.6	+	59209399,59209899,59212340,59212728,59214804	59209511,59211810,59212486,59213601,59215239	0.615385
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	40004279	40004350	40004317	+	High_confidence	58	61	207	5.679876	6.606997	chr20	40004094	40004398	LINE|L1|L1PA13	-	chr20	40004460	40008529	LINC01370|NR_109936.1	+	40004460,40006262,40007902	40004491,40006442,40008529	0.710145
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	154928483	154928506	154928503	+	High_confidence	27	28	51	1.399390	5.168296	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.921569
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	8652234	8652275	8652268	+	High_confidence	996	1011	2455	67.362782	5.916479	chr6	8652094	8652454	LTR|ERVL-MaLR|MLT1A	+	chr6	8652261	8653814	AL591485.1|ENST00000646741.1	+	8652261,8653544	8653136,8653814	0.951120
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	12572757	12572809	12572759	-	RAMPAGE_only	4	7	19	0.521341	4.037401	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	30594379	30594390	30594389	-	High_confidence	13	13	31	0.850609	4.211261	chr7	30594385	30594501	SINE|MIR|MIR3	+	chr7	30578069	30594758	GARS-DT|ENST00000582549.1	-	30578069,30579005,30579230,30584422,30584710,30585329,30594710	30578091,30579128,30579314,30584453,30584808,30585479,30594758	0.516129
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	15602157	15602158	15602157	-	High_confidence	18	18	21	0.576219	2.851149	chrX	15602053	15602111	LINE|CR1|L3	-	chrX	15594886	15602148	ACE2|ENST00000484756.1	-	15594886,15600725,15601955	15595003,15601014,15602148	0.952381
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	33931121	33931157	33931156	+	High_confidence	4	5	26	0.713414	3.720176	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.923077
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	130593336	130593337	130593336	+	RAMPAGE_only	31	31	32	0.878048	4.171465	chr9	130592851	130593403	LINE|L2|L2a	+	chr9	130581094	130613022	FUBP3|ENST00000465949.1	+	130581094,130595482,130609953,130612455,130612955	130581513,130595588,130609987,130612505,130613022	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	36925056	36925068	36925056	-	RAMPAGE_only	6	6	20	0.548780	3.681881	chr3	36923610	36925588	LTR|ERV1|MER83A-int	+	chr3	36899106	36908518	TRANK1|ENST00000463764.2	-	36899106,36903148,36908322	36899259,36903275,36908518	0.700000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	84085183	84085204	84085203	-	High_confidence	3	3	7	0.192073	2.521641	chr5	84085110	84086606	LINE|L1|L1P3	-	chr5	83940599	84085711	MSTRG.20664.2	-	83940599,83963204,84060299,84064699,84066450,84085158	83943568,83963360,84060484,84064844,84066606,84085711	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	34244753	34244816	34244778	-	High_confidence	12	12	89	2.442072	5.597379	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244796	MSTRG.20274.4	-	34175821,34179012,34182679,34200820,34218294,34239374,34244615	34175957,34179097,34182867,34200921,34218450,34239448,34244796	0.539326
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	61811820	61811821	61811820	-	High_confidence	14	14	14	0.384146	3.324863	chr11	61811607	61811887	SINE|Alu|AluSx1	-	chr11	61803425	61810885	FADS1|ENST00000539999.1	-	61803425,61803669,61804684,61806663,61810750	61803459,61803767,61804761,61806724,61810885	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	1828224	1828230	1828229	+	RAMPAGE_only	6	6	14	0.384146	2.753434	chr16	1827999	1828297	SINE|Alu|AluY	+	chr16	1827223	1828907	FAHD1|NM_031208.3	+	1827223	1828907	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	247171424	247171425	247171424	-	High_confidence	10	10	12	0.329268	3.584963	chr1	247171309	247171510	LTR|ERV1|MER57E3	+	chr1	247156419	247171967	ZNF124|ENST00000543802.2	-	247156419,247159005,247159686,247171847	247157403,247159066,247159813,247171967	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	159920338	159920374	159920338	-	RAMPAGE_only	3	3	17	0.466463	3.852169	chr1	159920065	159920288	LINE|CR1|L3b	-	chr1	159918106	159923717	TAGLN2|NM_001277224.1	-	159918106,159919273,159919660,159920329,159923435	159918941,159919376,159919835,159920537,159923717	0.941176
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	54187904	54187905	54187904	-	High_confidence	11	11	11	0.301829	3.459432	chr12	54187852	54187993	LINE|L2|L2c	-	chr12	54181452	54188607	SMUG1|ENST00000506595.5	-	54181452,54182503,54183655,54188514	54181647,54182623,54183959,54188607	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	71383124	71383147	71383124	+	RAMPAGE_only	7	8	15	0.411585	3.589898	chrX	71383170	71383464	LINE|L1|L1MC5a	+	chrX	71387085	71388301	TAF1|ENST00000472567.1	+	71387085,71388236	71387461,71388301	0.600000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	119046587	119046631	119046591	-	RAMPAGE_only	6	6	38	1.042683	4.191846	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.947368
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	37187476	37187484	37187483	+	RAMPAGE_only	5	7	16	0.439024	3.506891	chr9	37187210	37187548	DNA|hAT-Charlie|MER1B	-	chr9	37144931	37356980	ZCCHC7|ENST00000488607.5	+	37144931,37147361,37302187,37304187,37305543,37327798,37349356,37354709,37356834	37144997,37147445,37302231,37304313,37305714,37327834,37349452,37354824,37356980	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	17488758	17488765	17488758	+	High_confidence	3	4	10	0.274390	2.725481	chr19	17488402	17488763	LINE|L2|L2b	+	chr19	17488759	17500555	SLC27A1|ENST00000593701.5	+	17488759,17489007,17497254,17500277,17500494	17488939,17489117,17497464,17500404,17500555	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	120256564	120256569	120256568	+	RAMPAGE_only	7	8	14	0.384146	3.324863	chr2	120256375	120256735	LTR|ERVL-MaLR|THE1C	+	chr2	120253298	120289757	RALB|ENST00000412383.5	+	120253298,120278617,120285873,120289579	120253731,120278778,120286082,120289757	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	49504061	49504074	49504061	-	RAMPAGE_only	2	2	12	0.329268	3.251629	chr16	49503969	49504281	LINE|L1|L1MB3	+	chr16	49490786	49664225	ZNF423|ENST00000535559.5	-	49490786,49523623,49525362,49626169,49635659,49664090	49491304,49523739,49525494,49626254,49638874,49664225	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	80374423	80374450	80374423	-	High_confidence	47	51	170	4.664633	5.765914	chr7	80374347	80374986	LINE|RTE-X|L4_B_Mam	+	chr7	80371516	80374439	LOC101927269|NR_110075.1	-	80371516,80372126,80373811,80374340	80371577,80372294,80373990,80374439	0.788235
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	109734700	109734704	109734703	-	RAMPAGE_only	3	3	8	0.219512	2.500000	chr4	109734521	109734825	SINE|Alu|AluSx3	+	chr4	109709988	109730086	PLA2G12A|NM_030821.4	-	109709988,109717547,109718682,109729601	109714495,109717713,109718759,109730086	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	3695841	3695880	3695841	-	RAMPAGE_only	8	8	22	0.603658	4.201841	chr16	3695604	3696096	LINE|L1|L1MC4a	+	chr16	3679734	3691133	TRAP1|ENST00000571538.5	-	3679734,3685995,3689054,3690826	3679790,3686136,3689137,3691133	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	92914950	92914959	92914950	+	High_confidence	6	6	11	0.301829	3.459432	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.636364
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	75336397	75336432	75336421	+	High_confidence	2	3	9	0.246951	2.725481	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	8351847	8351848	8351847	-	RAMPAGE_only	10	11	11	0.301829	3.121928	chr21	8350922	8352925	Retroposon|SVA|SVA_D	-	chr21	8209623	8211495	MSTRG.16604.1	-	8209623,8210814	8209709,8211495	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	54852034	54852048	54852034	-	RAMPAGE_only	4	4	10	0.274390	3.121928	chr1	54851851	54852077	SINE|MIR|MIRb	-	chr1	54849663	54886890	DHCR24|ENST00000648712.1	-	54849663,54853433,54854036,54865302,54871349,54875092,54875941,54879059,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54879319,54883773,54886890	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	58518364	58518381	58518380	-	High_confidence	5	5	12	0.329268	3.418296	chr3	58518249	58518530	DNA|hAT|MamRep38	-	chr3	58505137	58517387	ACOX2|ENST00000460921.1	-	58505137,58508892,58510978,58517205	58505286,58509025,58511054,58517387	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	169968456	169968464	169968456	+	RAMPAGE_only	10	10	35	0.960366	4.321721	chr3	169968383	169968516	SINE|MIR|MIR	+	chr3	169966825	169985885	SEC62|ENST00000481435.5	+	169966825,169975607,169976945,169982706,169983160,169985804	169966858,169975716,169977051,169982911,169983253,169985885	0.885714
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	74949017	74949042	74949041	-	RAMPAGE_only	7	7	12	0.329268	3.418296	chr9	74949002	74949099	SINE|MIR|MIR	+	chr9	74946580	74952886	C9orf40|ENST00000376854.5	-	74946580,74952185	74948206,74952886	0.583333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	75025225	75025264	75025263	-	RAMPAGE_only	8	8	31	0.850609	3.904482	chr14	75025064	75026121	LINE|L2|L2c	+	chr14	75015486	75023018	MLH3|ENST00000554697.5	-	75015486,75017007,75018828,75022813,75022994	75015862,75017201,75018980,75022892,75023018	0.709677
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	89556703	89556704	89556703	-	High_confidence	262	293	353	9.685972	6.972427	chr10	89556405	89557345	LTR|ERVL|MER21A	+	chr10	89430298	89556712	MSTRG.3353.1	-	89430298,89436059,89438603,89441107,89443755,89462378,89555881,89556523	89433326,89436319,89439183,89441251,89443859,89462624,89555981,89556712	0.600567
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	39913616	39913638	39913616	-	RAMPAGE_only	3	3	9	0.246951	2.750000	chr17	39913345	39913624	SINE|Alu|AluSz	+	chr17	39909452	39917147	GSDMB|ENST00000464556.1	-	39909452,39912325,39917081	39909924,39912497,39917147	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	64784609	64784620	64784609	-	RAMPAGE_only	5	5	10	0.274390	2.725481	chr14	64784593	64784728	LINE|L2|L2b	+	chr14	64766398	64823148	SPTB|NM_000347.5	-	64766398,64767302,64767662,64769033,64769589,64770884,64772579,64773219,64774396,64775124,64779156,64779724,64782289,64784246,64785536,64785748,64786403,64791718,64792996,64794466,64795336,64796556,64797728,64799746,64800755,64801284,64801753,64802225,64803606,64804938,64822946	64766801,64767352,64767859,64769118,64769728,64771129,64772954,64773424,64774527,64775403,64779246,64779931,64782553,64784393,64785627,64785951,64787160,64791856,64793867,64794617,64795639,64796715,64797846,64799934,64800868,64801400,64801834,64802317,64803780,64805090,64823148	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	227243965	227243981	227243965	-	RAMPAGE_only	4	4	9	0.246951	2.947703	chr1	227243888	227244587	LINE|L1|L1ME3	+	chr1	226989865	227220230	MSTRG.2497.4	-	226989865,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227112670,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227219262	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227112913,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227220230	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50541362	50541389	50541388	+	RAMPAGE_only	8	9	16	0.439024	3.327820	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	125953878	125953881	125953879	+	RAMPAGE_only	24	56	78	2.140243	4.140611	chr9	125953861	125954183	DNA|hAT-Charlie|Charlie2b	+	chr9	125843712	125965940	PBX3|ENST00000538998.1	+	125843712,125915685,125929654,125935471,125960683,125963011,125965830	125843812,125915927,125929845,125935607,125960849,125963101,125965940	0.589744
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	69624854	69624887	69624886	+	High_confidence	7	7	17	0.466463	4.087463	chr12	69624839	69624972	SINE|Alu|FLAM_C	-	chr12	69624136	69785016	MSTRG.6079.1	+	69624136,69624856,69638809,69755383,69756404,69784719	69624461,69624950,69639014,69755659,69756663,69785016	0.647059
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	69	69	69	1.893292	3.509130	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	75626304	75626305	75626304	-	High_confidence	7	7	11	0.301829	2.846439	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	150169491	150169514	150169491	+	RAMPAGE_only	3	3	7	0.192073	2.521641	chr2	150169164	150169828	LTR|ERVL|MLT2B3	-	chr2	150171422	150301080	LINC01818|ENST00000437118.1	+	150171422,150214333,150300972	150171603,150214412,150301080	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	50756715	50756753	50756752	-	RAMPAGE_only	2	2	7	0.192073	2.521641	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	28611560	28611591	28611579	+	High_confidence	19	19	86	2.359755	4.863920	chr15	28611536	28611817	SINE|Alu|AluSx3	-	chr15	28612141	28633274	HERC2P9|ENST00000529537.1	+	28612141,28618218,28618523,28629265,28632636,28633191	28612173,28618378,28618655,28629441,28632807,28633274	0.930233
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	8056989	8056994	8056989	+	High_confidence	7	7	15	0.411585	3.456565	chr17	8057038	8057470	LTR|ERVK|HERVK-int	+	chr17	8056890	8073936	MSTRG.10790.1	+	8056890,8064913	8063060,8073936	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	92244943	92244950	92244949	-	High_confidence	9	10	24	0.658536	3.438722	chr7	92244870	92245026	DNA|hAT-Charlie|MER20B	+	chr7	92200357	92245795	KRIT1|ENST00000412043.6	-	92200357,92201306,92213194,92213891,92214610,92221901,92222821,92225719,92226525,92234448,92234807,92235402,92236412,92237666,92240992,92242033,92244001,92244901,92245426	92200804,92201423,92213401,92213979,92214777,92222053,92222978,92225827,92226682,92234592,92234923,92235646,92236542,92237759,92241152,92242137,92244149,92245171,92245795	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	179527792	179527803	179527792	-	RAMPAGE_only	2	2	10	0.274390	3.121928	chr3	179527648	179527777	LTR|ERV1|LTR37B	-	chr3	179396088	179451590	GNB4|ENST00000232564.7	-	179396088,179405189,179413411,179413714,179414884,179416492,179419398,179420888,179426143,179451345	179401319,179405406,179413613,179413781,179415047,179416556,179419505,179420927,179426242,179451590	0.600000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	32446972	32447018	32446972	+	High_confidence	5	5	22	0.603658	3.784942	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.954545
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	48199424	48199435	48199424	-	RAMPAGE_only	3	3	8	0.219512	2.521641	chr17	48199174	48199607	LINE|L2|L2c	+	chr17	48180091	48185179	SKAP1|ENST00000579336.1	-	48180091,48182393,48184722	48180248,48182457,48185179	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	37465445	37465463	37465445	-	RAMPAGE_only	4	4	12	0.329268	3.251629	chr19	37464765	37465454	LINE|L2|L2a	+	chr19	37411154	37467229	ZNF569|ENST00000392149.6	-	37411154,37425867,37426251,37444906,37467086	37414419,37425963,37426378,37444964,37467229	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	6457358	6457360	6457358	+	RAMPAGE_only	5	7	11	0.301829	2.663533	chr1	6457308	6457373	LINE|CR1|L3	-	chr1	6451716	6460405	ESPN|ENST00000477679.2	+	6451716,6457183,6457360,6459998	6452096,6457263,6457372,6460405	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	95509593	95509611	95509594	-	RAMPAGE_only	5	7	12	0.329268	3.277613	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	41186139	41186140	41186139	-	RAMPAGE_only	4	4	7	0.192073	2.584963	chr1	41186124	41186319	SINE|MIR|MIR1_Amn	+	chr1	41027198	41163017	SCMH1|NM_001172221.1	-	41027198,41028583,41033982,41037361,41046406,41048689,41070594,41075218,41113282,41116921,41142877,41151613,41160874,41161363,41162778	41028319,41028726,41034048,41037541,41046598,41048890,41070721,41075451,41113526,41117010,41143112,41151684,41160898,41161432,41163017	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	217842161	217842201	217842173	-	High_confidence	509	652	3128	85.829239	7.372825	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.872442
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	6918666	6918680	6918679	-	High_confidence	4	4	12	0.329268	3.418296	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	130095960	130095961	130095960	+	RAMPAGE_only	8	8	12	0.329268	3.277613	chr11	130095885	130096003	LINE|L2|L2a	-	chr11	130070567	130144811	APLP2|NM_001243299.1	+	130070567,130109428,130110537,130120705,130121613,130122304,130123611,130126699,130127765,130129047,130130037,130133628,130135562,130140397,130141497,130141918,130143346	130070747,130109602,130110661,130120818,130121810,130122513,130123779,130126830,130127840,130129206,130130166,130133728,130135715,130140483,130141572,130142074,130144811	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	82056441	82056449	82056441	+	High_confidence	47	51	119	3.265243	6.182396	chr16	82056434	82056642	LINE|L1|L1ME3A	+	chr16	82056452	82098341	HSD17B2|ENST00000568090.5	+	82056452,82068169,82070941,82090901,82098074	82056513,82068382,82071127,82091039,82098341	0.672269
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	151369320	151369321	151369320	-	RAMPAGE_only	7	7	9	0.246951	3.169925	chr1	151369225	151369333	DNA|hAT-Tip100|MER91A	-	chr1	151365671	151372683	SELENBP1|ENST00000458566.5	-	151365671,151365767,151366274,151366721,151368198,151369003,151369441,151369712,151372637	151365684,151365846,151366453,151366904,151368319,151369189,151369506,151369769,151372683	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	227244039	227244043	227244039	-	RAMPAGE_only	6	6	17	0.466463	3.327820	chr1	227243888	227244587	LINE|L1|L1ME3	+	chr1	227199556	227254155	CDC42BPA|ENST00000462553.2	-	227199556,227213135,227219262,227254063	227199652,227213219,227219420,227254155	0.529412
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	99893444	99893445	99893444	-	High_confidence	8	10	10	0.274390	2.521928	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	93526797	93526837	93526836	-	RAMPAGE_only	4	4	13	0.356707	3.584963	chr11	93526711	93526822	SINE|MIR|MIRc	-	chr11	93479033	93523367	SMCO4|ENST00000529714.5	-	93479033,93499275,93523336	93479284,93499348,93523367	0.538462
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	128740781	128740782	128740781	-	RAMPAGE_only	4	4	7	0.192073	2.584963	chr9	128740596	128740754	LINE|RTE-X|L4_C_Mam	-	chr9	128729785	128771893	ZER1|ENST00000291900.6	-	128729785,128733425,128735333,128739930,128740771,128741534,128741799,128742529,128750615,128751121,128751412,128752672,128753163,128753808,128755407,128771580	128731394,128733528,128735431,128740119,128740887,128741654,128741841,128742745,128750789,128751268,128751527,128752849,128753600,128753959,128755659,128771893	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	118102964	118102996	118102964	+	RAMPAGE_only	2	2	9	0.246951	2.750000	chr11	118102849	118103028	SINE|MIR|MIRc	-	chr11	118105566	118115219	TMPRSS4|ENST00000528118.5	+	118105566,118111740,118113268,118114828,118115137	118108896,118111900,118113435,118114927,118115219	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	59619888	59619929	59619894	+	High_confidence	1521	1802	6926	190.042617	5.864549	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.954664
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	12522682	12522776	12522764	+	RAMPAGE_only	10	10	58	1.591463	3.991961	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.948276
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	93773403	93773412	93773411	+	RAMPAGE_only	3	3	6	0.164634	2.584963	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93848659	93850756	CRADD|ENST00000548330.1	+	93848659,93849969	93849342,93850756	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	22516386	22516408	22516386	+	High_confidence	2	2	9	0.246951	3.169925	chr15	22516326	22516634	SINE|Alu|AluSx3	-	chr15	22516908	22590815	HERC2P2|ENST00000619021.4	+	22516908,22534067,22537437,22537992,22539096,22541994,22542482,22542722,22542942,22545766,22546429,22546677,22546937,22547880,22554384,22556011,22556909,22559788,22560787,22561257,22561558,22562948,22564388,22569148,22572928,22573278,22573974,22577158,22577429,22579583,22587343,22589942	22516990,22534243,22537608,22538096,22539247,22542209,22542615,22542850,22543138,22545900,22546600,22546820,22547089,22548072,22554572,22556204,22557092,22559970,22560935,22561454,22561789,22563087,22564532,22569291,22573181,22573415,22574073,22577332,22577555,22579723,22587391,22590815	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	1107261	1107280	1107261	-	RAMPAGE_only	2	2	8	0.219512	2.521641	chr5	1106701	1107319	LTR|ERV1|MER4CL34	+	chr5	1050375	1112035	SLC12A7|ENST00000264930.9	-	1050375,1053348,1057470,1060343,1063843,1064082,1065282,1073632,1074566,1075370,1076137,1076693,1077832,1078700,1079397,1081576,1083744,1085231,1086902,1088305,1088981,1093532,1094153,1111867	1052451,1053482,1057649,1060451,1063975,1064252,1065478,1073801,1074671,1075490,1076236,1076812,1078007,1078758,1079496,1081744,1083956,1085473,1087033,1088360,1089128,1093655,1094248,1112035	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	154409561	154409582	154409581	+	RAMPAGE_only	3	3	8	0.219512	2.521641	chr5	154409601	154409687	LINE|L1|L1PREC2	+	chr5	154403776	154419033	GALNT10|ENST00000517958.1	+	154403776,154409540,154412888,154415782,154416813	154404216,154409762,154413005,154415932,154419033	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	134373102	134373106	134373102	+	RAMPAGE_only	16	18	30	0.823170	4.487123	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134371970	134440585	RXRA|ENST00000356384.4	+	134371970,134374006,134401395,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134372139,134374130,134401540,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440585	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	170743955	170743956	170743955	-	RAMPAGE_only	10	10	11	0.301829	2.721928	chr2	170743777	170744187	LTR|ERVL|LTR52	-	chr2	170723085	170770766	AC007405.1|ENST00000442456.4	-	170723085,170727284,170727658,170730367,170733878,170740631,170770701	170723593,170727328,170727788,170730997,170733994,170741287,170770766	0.727273
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	114327236	114327267	114327241	+	RAMPAGE_only	80	125	231	6.338412	5.704308	chr9	114327052	114327433	LTR|ERVL-MaLR|MSTA	+	chr9	114329788	114333256	ORM2|NM_000608.2	+	114329788,114330433,114330791,114331566,114331825,114333068	114330018,114330576,114330862,114331674,114331929,114333256	0.974026
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	202551736	202551788	202551736	+	RAMPAGE_only	26	27	120	3.292682	6.382048	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.583333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	61802081	61802128	61802081	-	RAMPAGE_only	7	7	25	0.685975	4.483856	chr11	61801882	61802044	SINE|Alu|AluSx	-	chr11	61799624	61817057	FADS1|NM_013402.4	-	61799624,61802800,61803031,61803362,61803669,61804684,61806663,61810750,61810973,61812470,61813242,61816554	61802462,61802926,61803111,61803459,61803767,61804761,61806724,61810879,61811075,61812668,61813353,61817057	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	109383497	109383500	109383497	-	High_confidence	10	10	22	0.603658	3.975418	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.954545
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100910241	100910301	100910248	+	RAMPAGE_only	4	4	29	0.795731	4.593069	chr14	100910200	100910300	SINE|MIR|MIRc	+	chr14	100906043	100947076	MSTRG.8059.73	+	100906043,100906935,100913431,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100906163,100910304,100931545,100936310,100937488,100938956,100940450,100942838,100944925,100947076	0.517241
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	243293170	243293202	243293201	+	RAMPAGE_only	3	3	7	0.192073	2.521641	chr1	243293190	243293276	LINE|L1|L1MB4	-	chr1	243286382	243500091	SDCCAG8|ENST00000435549.1	+	243286382,243304712,243307988,243316754,243330539,243341038,243344214,243378720,243426426,243489013,243499755	243286397,243304777,243308177,243316893,243330692,243341173,243344331,243378863,243426558,243489140,243500091	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	1897066	1897098	1897097	+	High_confidence	2	2	9	0.246951	3.000000	chr11	1896880	1897269	LTR|ERV1|MER57B2	-	chr11	1897014	1908656	LINC01150|ENST00000455671.2	+	1897014,1901715,1902589,1903103,1907831	1897145,1901770,1902724,1903256,1908656	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	18149863	18149869	18149868	+	High_confidence	10	10	24	0.658536	3.762267	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	128626784	128626823	128626822	-	RAMPAGE_only	6	8	27	0.740853	4.315824	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.962963
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	169665080	169665086	169665083	-	RAMPAGE_only	47	66	211	5.789632	6.780145	chr2	169664891	169665263	LTR|ERVL|LTR52	-	chr2	169645424	169694421	CCDC173|NM_001085447.1	-	169645424,169649181,169650328,169654074,169662279,169674575,169674866,169681006,169694260	169646182,169649346,169650521,169654214,169662436,169674769,169675040,169681233,169694421	0.928910
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	70397734	70397738	70397734	+	High_confidence	15	15	24	0.658536	4.262692	chr11	70397653	70398136	LINE|L2|L2c	+	chr11	70397745	70436562	MSTRG.4576.1	+	70397745,70405264,70407297,70407517,70409830,70414541,70415662,70417012,70419745,70420399,70421469,70422939,70425331,70429050,70431190,70433100,70433646,70435025,70435465,70436281	70398064,70405361,70407384,70407591,70409960,70414652,70415717,70417123,70419856,70420510,70421580,70422995,70425401,70429199,70431280,70433278,70433718,70435119,70435555,70436562	0.958333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	58939473	58939504	58939483	+	RAMPAGE_only	23	23	48	1.317073	4.841615	chr11	58939456	58939812	LTR|ERV1|LOR1-int	+	chr11	58943248	58956406	GLYATL1|ENST00000527708.5	+	58943248,58943542,58947045,58947857,58954769,58955175,58955609	58943322,58943666,58947165,58947965,58954896,58955353,58956406	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	72693353	72693354	72693353	-	RAMPAGE_only	42	42	57	1.564024	4.675912	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.842105
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	94657907	94657908	94657907	-	RAMPAGE_only	74	81	81	2.222560	4.853473	chr14	94657425	94658900	Retroposon|SVA|SVA_C	+	chr14	94378375	94390693	SERPINA1|ENST00000393088.8	-	94378375,94379463,94380870,94382591,94388559,94388800,94390456	94378640,94379611,94381141,94383241,94388663,94389010,94390693	0.987654
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	58578102	58578145	58578102	-	High_confidence	24	30	109	2.990853	6.108787	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.605505
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	24284218	24284245	24284218	+	RAMPAGE_only	2	2	9	0.246951	2.500000	chr13	24284180	24284220	LINE|CR1|L3	+	chr13	24270687	24303904	SPATA13|ENST00000399949.6	+	24270687,24284134,24286213,24286764,24288998,24290651,24294738,24297362,24300400,24302597	24270912,24284271,24286393,24286950,24289178,24290884,24294868,24297735,24300475,24303904	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	20674497	20674498	20674497	+	High_confidence	250	250	266	7.298778	4.910639	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.849624
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	34988767	34988792	34988767	-	High_confidence	3	4	12	0.329268	3.459432	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	24383294	24383321	24383294	-	High_confidence	38	38	117	3.210365	6.406564	chr6	24383044	24383353	SINE|Alu|AluSp	+	chr6	24171754	24383292	DCDC2|NM_001195610.1	-	24171754,24178329,24205001,24278048,24288851,24290931,24301714,24301967,24353568,24357457,24383180	24174834,24178632,24205102,24278211,24288906,24291078,24301846,24302044,24353623,24357847,24383292	0.760684
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	31676935	31676993	31676935	-	RAMPAGE_only	2	2	20	0.548780	3.932138	chr20	31676796	31676965	LINE|CR1|L3	-	chr20	31664551	31683765	MSTRG.16192.5	-	31664551,31664932,31676621	31664850,31666086,31683765	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	52790412	52790417	52790416	+	High_confidence	5	5	11	0.301829	3.277613	chr3	52790374	52790578	SINE|MIR|MIRb	+	chr3	52790633	52792061	ITIH1|ENST00000494705.1	+	52790633,52791516,52791781	52790921,52791628,52792061	0.636364
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	139551183	139551196	139551183	+	RAMPAGE_only	3	3	7	0.192073	2.807355	chrX	139551151	139551275	DNA|hAT-Ac|OldhAT1	+	chrX	139544680	139563301	F9|ENST00000643157.1	+	139544680,139547304,139548362,139551061,139560740,139561523,139563105	139545148,139547894,139548491,139551264,139560855,139561741,139563301	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	6847076	6847128	6847118	-	RAMPAGE_only	17	20	66	1.810975	4.041696	chr2	6846888	6847664	LTR|ERV1|LTR25	-	chr2	6828553	6840464	NRIR|NR_126359.1	-	6828553,6829967,6833313,6840290	6828955,6830106,6833430,6840464	0.772727
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	72363573	72363576	72363573	-	High_confidence	4	4	9	0.246951	2.750000	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	5726383	5726387	5726386	-	High_confidence	4	4	8	0.219512	2.807355	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	168555332	168555494	168555443	-	RAMPAGE_only	5	5	106	2.908536	4.899978	chr5	168555251	168555542	SINE|Alu|AluSx	-	chr5	168548494	168579600	PANK3|ENST00000239231.6	-	168548494,168559031,168561392,168563888,168566012,168568645,168579255	168557621,168559157,168561516,168564065,168566266,168568998,168579600	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	24137852	24137866	24137852	+	RAMPAGE_only	8	8	30	0.823170	4.123231	chr3	24137269	24137970	LINE|L2|L2a	-	chr3	24151323	24189956	LOC101927854|NR_121667.1	+	24151323,24173783,24177949,24189574	24151400,24173904,24178012,24189956	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	101385007	101385008	101385007	-	High_confidence	102	103	103	2.826219	5.638112	chr9	101384858	101386000	LTR|ERVK|MER11A	-	chr9	101360416	101385005	BAAT|NM_001701.3	-	101360416,101368119,101370938,101384854	101363015,101368322,101371463,101385005	0.825243
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	7502503	7502544	7502503	-	High_confidence	4	4	17	0.466463	3.875000	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.941176
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	33931396	33931431	33931417	+	High_confidence	4	4	16	0.439024	3.189898	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	73272240	73272248	73272240	+	High_confidence	4	4	8	0.219512	2.521641	chr11	73272218	73272327	SINE|MIR|MIRc	+	chr11	73272201	73298617	P2RY6|ENST00000393590.2	+	73272201,73296484	73272466,73298617	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	128622517	128622553	128622517	+	RAMPAGE_only	3	3	14	0.384146	3.521641	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	2881635	2881636	2881635	-	High_confidence	5	6	7	0.192073	2.584963	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	48362657	48362680	48362679	+	RAMPAGE_only	3	5	12	0.329268	3.277613	chr2	48362726	48363918	DNA|TcMar-Tigger|Tigger3b	+	chr2	48346216	48375565	FOXN2|ENST00000616844.1	+	48346216,48346532,48359046,48362642,48373291,48374919	48346530,48346751,48359147,48362707,48373360,48375565	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	55352827	55352837	55352827	+	RAMPAGE_only	3	3	9	0.246951	3.000000	chr14	55352765	55352941	DNA|TcMar-Mariner|MARNA	+	chr14	55271302	55353609	FBXO34|ENST00000313833.4	+	55271302,55350380	55271537,55353609	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	75376713	75376746	75376745	-	RAMPAGE_only	3	3	8	0.219512	3.000000	chr16	75376668	75377149	LTR|ERV1|MER66B	+	chr16	75293905	75363035	CFDP1|ENST00000564793.1	-	75293905,75305023,75362874	75294042,75305182,75363035	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	44229594	44229630	44229594	+	High_confidence	4	4	16	0.439024	3.155639	chr6	44229546	44229598	LINE|CR1|L3b	-	chr6	44229770	44232428	SLC29A1|ENST00000646251.1	+	44229770,44229906,44230366,44230567,44230810,44231363,44231997,44232342	44229791,44230046,44230481,44230665,44230889,44231461,44232106,44232428	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	83806154	83806196	83806154	-	High_confidence	2	2	9	0.246951	2.725481	chr16	83806046	83806177	DNA|hAT-Charlie|MER20	+	chr16	83803456	83806127	AC009119.1|ENST00000565064.1	-	83803456,83805622	83803528,83806127	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100829523	100830136	100829523	+	High_confidence	124	137	2210	60.640223	7.265578	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829610	100860987	MSTRG.8059.34	+	100829610,100831420,100836166,100845457,100860690	100831094,100834751,100836300,100845533,100860987	0.955204
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	30153263	30153613	30153263	-	RAMPAGE_only	14	18	234	6.420729	6.593701	chr6	30153221	30153553	LINE|L2|L2c	+	chr6	30151944	30160934	TRIM10|ENST00000449742.6	-	30151944,30155726,30156938,30157368,30158398,30159149,30160429	30154486,30155759,30157054,30157391,30158629,30159245,30160934	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	7913248	7913268	7913248	-	RAMPAGE_only	18	18	43	1.179878	4.460903	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.581395
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	3536845	3536868	3536845	-	High_confidence	4	4	13	0.356707	3.418296	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3533223	3536869	AC108488.1|ENST00000438482.1	-	3533223,3534112,3536723	3533848,3534255,3536869	0.615385
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	170226587	170226588	170226587	+	High_confidence	185	208	255	6.996949	6.462883	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226588	170283079	MSTRG.20047.1	+	170226588,170276581,170282750	170226783,170276675,170283079	0.658824
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	6590248	6590304	6590248	+	High_confidence	3	4	25	0.685975	4.053509	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.960000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	41871711	41871820	41871819	-	RAMPAGE_only	7	8	64	1.756097	5.263759	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.781250
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	157279795	157279819	157279795	+	High_confidence	17	20	77	2.112804	5.665947	chr1	157279383	157279886	LTR|ERV1|LTR21A	-	chr1	157280715	157283068	AL138900.3|ENST00000607010.1	+	157280715,157282577	157280853,157283068	0.844156
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	62598052	62598072	62598052	-	RAMPAGE_only	4	4	9	0.246951	2.947703	chr11	62597909	62598004	DNA|hAT-Tip100|MER91C	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	29209023	29209024	29209023	+	RAMPAGE_only	27	28	37	1.015244	4.082112	chr12	29208990	29209077	LINE|L2|L2	-	chr12	29223622	29335616	FAR2|NM_018099.4	+	29223622,29270411,29293299,29297020,29307657,29309185,29311027,29311882,29316840,29321794,29332599,29333631	29223894,29270638,29293475,29297200,29307835,29309230,29311146,29311950,29317012,29321924,29332727,29335616	0.945946
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	47179140	47179162	47179161	+	High_confidence	4	4	8	0.219512	2.750000	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	118700456	118700479	118700456	+	High_confidence	5	5	9	0.246951	3.169925	chr11	118700359	118700777	LTR|ERVL-MaLR|MLT1H	+	chr11	118700426	118708848	AP002954.1|ENST00000646572.1	+	118700426,118704607,118708381	118700643,118704838,118708848	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	118172460	118172492	118172460	-	RAMPAGE_only	2	2	13	0.356707	3.418296	chr12	118172293	118172417	LINE|L2|L2b	-	chr12	118159775	118161879	TAOK3|ENST00000537569.1	-	118159775,118161787	118160358,118161879	0.769231
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	227142956	227143000	227142956	-	RAMPAGE_only	10	10	23	0.631097	4.277613	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989865	227220230	MSTRG.2497.4	-	226989865,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227112670,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227219262	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227112913,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227220230	0.956522
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	67522345	67522366	67522360	+	High_confidence	12	13	32	0.878048	4.452820	chr1	67522395	67522435	LTR|ERVL|LTR47A	+	chr1	67522353	67532326	LINC01702|ENST00000230113.4	+	67522353,67527377,67529652,67530314,67532105	67522398,67527437,67529749,67530378,67532326	0.906250
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	63746926	63746956	63746926	-	RAMPAGE_only	2	3	11	0.301829	2.846439	chr15	63746812	63746905	LINE|L2|L2c	-	chr15	63622837	63833885	MSTRG.8815.4	-	63622837,63623724,63624157,63625941,63628676,63630465,63632708,63633847,63634732,63635960,63637504,63638410,63638710,63640151,63641469,63642956,63643403,63644991,63645482,63648068,63649724,63651252,63652413,63654118,63655741,63656087,63658543,63659735,63660972,63661752,63663004,63664469,63665918,63666355,63669537,63672495,63674341,63677844,63680076,63680536,63686358,63689588,63690540,63692410,63693963,63694311,63694773,63696123,63698727,63706779,63712774,63713352,63716301,63718573,63718782,63723181,63725291,63727646,63729235,63729496,63732923,63734723,63746917,63747723,63749366,63749646,63752957,63754504,63755228,63756436,63758174,63764095,63774693,63833821	63622891,63623890,63624327,63626154,63628815,63630635,63632811,63633970,63634888,63636142,63637643,63638536,63638776,63640445,63641643,63643058,63643550,63645097,63645682,63648199,63649925,63651380,63652541,63654324,63655955,63656358,63658718,63659936,63661025,63662021,63663204,63664594,63666150,63666472,63669698,63672694,63675093,63678365,63680160,63680776,63686535,63689699,63690647,63692566,63694157,63694549,63694894,63696339,63698996,63706831,63712895,63713665,63716473,63718694,63718897,63723355,63725513,63727838,63729368,63729649,63733145,63734849,63747083,63747858,63749538,63749791,63753085,63754648,63755325,63756748,63758369,63764191,63775649,63833885	0.818182
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	109383420	109383463	109383462	-	High_confidence	11	14	40	1.097561	4.634184	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	29760758	29760786	29760785	+	RAMPAGE_only	3	3	9	0.246951	2.725481	chr16	29760474	29761018	LTR|ERVL-MaLR|MLT1G1	+	chr16	29778239	29781648	ZG16|NM_152338.3	+	29778239,29779259,29779504,29780103	29778306,29779321,29779637,29781648	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	58927662	58927710	58927664	+	High_confidence	71	85	290	7.957314	6.343386	chr11	58927656	58928383	LTR|ERVK|HERVK22-int	-	chr11	58927628	58957074	GLYATL1|NM_001220494.2	+	58927628,58942539,58943542,58947045,58947857,58954769,58955175,58955609	58927829,58942584,58943666,58947165,58947965,58954896,58955353,58957074	0.968966
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	99916148	99916151	99916148	+	RAMPAGE_only	3	3	9	0.246951	3.000000	chr3	99916010	99916437	LTR|ERVL|MLT2B1	+	chr3	99817882	100172404	CMSS1|ENST00000491299.5	+	99817882,100141529,100146972,100160429,100162302,100166334,100167737,100171838,100172315	99818043,100141645,100147061,100160501,100162432,100166394,100167840,100171899,100172404	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	28902325	28902351	28902347	-	High_confidence	16	17	47	1.289634	4.942275	chr17	28901942	28902451	LINE|L2|L2b	+	chr17	28901111	28902126	DHRS13|ENST00000581759.1	-	28901111,28901492	28901301,28902126	0.723404
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	3083275	3083298	3083297	+	RAMPAGE_only	3	4	15	0.411585	3.773557	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	196741533	196741776	196741536	+	RAMPAGE_only	11	11	96	2.634145	5.066251	chr1	196741215	196741581	LTR|ERVL-MaLR|THE1D	-	chr1	196736907	196832189	MSTRG.2212.12	+	196736907,196737474,196740618,196743451,196830499,196831796	196737006,196737660,196742051,196743628,196830682,196832189	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	154038408	154038413	154038408	-	High_confidence	47	47	87	2.387194	5.593108	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.643678
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	28681084	28681085	28681084	+	RAMPAGE_only	12	12	13	0.356707	3.584963	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	0.923077
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	157273782	157273785	157273784	+	RAMPAGE_only	4	7	10	0.274390	2.947703	chr1	157273297	157273792	LTR|ERV1|LTR21A	-	chr1	157280715	157283068	AL138900.3|ENST00000607010.1	+	157280715,157282577	157280853,157283068	0.600000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	21024274	21024312	21024311	+	High_confidence	14	14	67	1.838414	5.074105	chr14	21024322	21024505	SINE|MIR|MIR3	+	chr14	21024295	21029271	AL161668.4|ENST00000532213.2	+	21024295,21028445,21028940	21024344,21028534,21029271	0.805970
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	140700445	140700457	140700445	+	High_confidence	932	1554	3824	104.926793	4.999070	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.978033
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	6927300	6927319	6927318	+	RAMPAGE_only	3	3	8	0.219512	2.807355	chr4	6927305	6927415	SINE|MIR|MIR	+	chr4	6909844	7033111	TBC1D14|ENST00000409757.8	+	6909844,6923372,6967303,6994183,6996324,6999084,7001144,7004843,7006631,7009876,7010652,7014447,7025003,7030326	6909951,6924111,6967424,6994302,6996407,6999202,7001251,7004924,7006726,7009948,7010781,7014557,7025262,7033111	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	40946878	40946913	40946878	-	RAMPAGE_only	5	5	11	0.301829	2.921928	chr13	40946717	40946884	SINE|Alu|AluJo	+	chr13	40933438	41061440	MSTRG.6819.4	-	40933438,40940920,40942951,40943841,40951328,40958835,40981982,41060837	40934028,40941370,40943144,40949973,40951436,40959016,40982282,41061440	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	12249219	12249239	12249219	+	RAMPAGE_only	4	4	10	0.274390	2.721928	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	14374107	14374138	14374137	+	High_confidence	19	25	82	2.249999	5.249090	chr17	14373785	14374201	LTR|ERVL|LTR16C	-	chr17	14374138	14421026	AC022816.1|ENST00000436469.1	+	14374138,14377283,14382017,14397061,14420656	14374228,14377421,14382112,14397172,14421026	0.756098
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	26512099	26512111	26512099	-	High_confidence	4	6	16	0.439024	3.189898	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	0.937500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	78600124	78600130	78600124	+	RAMPAGE_only	34	38	95	2.606706	5.831907	chr4	78599930	78600224	LTR|ERV1|MER92A	-	chr4	78601863	78610451	ANXA3|ENST00000503776.2	+	78601863,78610055	78604399,78610451	0.778947
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	88635643	88635661	88635643	+	High_confidence	4	4	15	0.411585	3.521641	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.600000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	70425277	70425295	70425294	+	RAMPAGE_only	2	2	7	0.192073	2.807355	chr10	70424911	70425430	LTR|ERVL-MaLR|MLT1F1	-	chr10	70404378	70428618	EIF4EBP2|ENST00000373218.4	+	70404378,70419913,70421715	70404546,70420099,70428618	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	86453149	86453192	86453149	-	High_confidence	6	6	38	1.042683	4.739098	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016477	86453145	MAPK10|ENST00000310816.8	-	86016477,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86107222,86159297,86194335,86354529,86370713,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86107352,86159467,86194407,86354644,86370867,86453145	0.710526
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	92579318	92579323	92579318	-	RAMPAGE_only	2	2	7	0.192073	2.584963	chr7	92579142	92579278	SINE|Alu|FLAM_C	-	chr7	92565507	92577717	FAM133B|ENST00000494079.1	-	92565507,92569822,92575770,92577102,92577654	92566061,92569915,92575821,92577195,92577717	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	154975545	154975546	154975545	+	High_confidence	4	4	6	0.164634	2.584963	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975538	154978916	CKS1B|ENST00000473344.1	+	154975538,154977986,154978724	154975608,154978114,154978916	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	73438198	73438281	73438280	+	RAMPAGE_only	700	727	3286	90.164603	6.375408	chr4	73438270	73438496	LINE|CR1|L3	+	chr4	73436246	73455743	AFP|ENST00000226359.2	+	73436246,73437159,73438173,73440601,73442295,73443346,73444992,73447461,73449334,73450035,73450614,73452400,73453764,73455630	73436347,73437211,73438306,73440813,73442428,73443444,73445122,73447676,73449467,73450133,73450753,73452624,73453897,73455743	0.998478
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	144133794	144133817	144133816	-	RAMPAGE_only	3	3	7	0.192073	2.584963	chr4	144133591	144133867	LINE|L1|L1M6	+	chr4	144133040	144140697	GYPA|ENST00000644398.1	-	144133040,144140598	144133564,144140697	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	2860848	2860850	2860848	+	RAMPAGE_only	5	8	11	0.301829	2.646439	chr4	2860711	2860912	SINE|MIR|MIR	-	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.545455
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	131033791	131033800	131033794	-	RAMPAGE_only	19	24	51	1.399390	4.938803	chr6	131033291	131033999	LINE|L1|L1MB4	+	chr6	130956024	131015842	EPB41L2|ENST00000526983.1	-	130956024,131015280,131015818	130956499,131015333,131015842	0.647059
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	20921012	20921028	20921012	+	High_confidence	3	3	6	0.164634	2.584963	chr17	20920944	20921033	LINE|L2|L2a	+	chr17	20921044	20930046	CCDC144NL-AS1|ENST00000443508.6	+	20921044,20924358,20929430	20921169,20924833,20930046	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	123055123	123055224	123055207	+	RAMPAGE_only	8	8	77	2.112804	5.430495	chr10	123055133	123055482	LTR|ERVL-MaLR|THE1A	-	chr10	123009015	123058311	ACADSB|ENST00000358776.6	+	123009015,123034355,123037746,123040465,123041208,123043045,123044392,123047208,123051048,123053060,123053694	123009071,123034515,123037847,123040672,123041379,123043171,123044485,123047298,123051186,123053160,123058311	0.974026
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	140785901	140785924	140785914	-	RAMPAGE_only	3	3	10	0.274390	2.725481	chr2	140785621	140786177	LINE|L2|L2c	+	chr2	140231422	142131701	LRP1B|ENST00000389484.7	-	140231422,140234785,140238151,140239441,140247085,140270241,140274423,140297807,140314934,140321962,140323892,140325761,140334452,140335614,140350796,140352952,140356341,140357978,140358820,140364660,140370709,140371178,140373007,140378179,140385892,140442503,140444329,140444562,140450567,140456454,140457462,140475137,140485342,140487616,140492607,140495564,140501686,140502962,140506795,140509927,140514652,140516888,140525843,140526236,140534020,140536580,140540972,140541778,140598630,140601449,140700249,140701720,140702140,140702426,140715972,140716681,140769212,140770880,140776097,140813656,140839990,140840917,140850101,140851651,140867589,140868098,140883816,140886137,140902919,140907876,140922964,140950234,140951859,140982159,140989531,140993994,141005334,141013555,141015695,141019921,141048985,141055115,141058882,141062050,141188420,141229182,141247225,141254521,141480395,141810278,142130647	140233326,140234884,140238296,140239532,140247162,140270346,140274598,140297969,140315099,140322088,140324066,140325878,140334559,140335838,140351038,140353072,140356476,140358116,140358946,140364783,140370842,140371285,140373137,140378286,140386009,140442623,140444449,140444679,140450661,140456603,140457651,140475337,140485524,140487739,140492693,140495748,140501874,140503103,140506918,140510056,140514772,140517011,140525993,140526350,140534140,140536709,140541098,140541971,140598835,140601639,140700621,140701845,140702292,140702553,140716102,140716816,140769344,140771006,140776238,140813806,140840085,140841092,140850329,140851783,140867834,140868263,140884021,140886335,140903165,140908077,140923147,140950402,140951940,140982276,140989657,140994135,141005457,141013745,141015915,141020102,141049222,141055259,141059054,141062273,141188583,141229440,141247354,141254641,141480533,141810401,142131701	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	196055591	196055678	196055677	-	High_confidence	17	17	86	2.359755	5.674763	chr3	196055660	196055729	SINE|Alu|AluJb	-	chr3	196053491	196055561	TFRC|ENST00000463047.1	-	196053491,196055079	196053558,196055561	0.953488
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	193614823	193614861	193614823	+	High_confidence	14	14	36	0.987805	3.832732	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	100263163	100263191	100263190	+	RAMPAGE_only	4	5	9	0.246951	2.947703	chr3	100263005	100263453	LTR|ERV1|LTR7	-	chr3	100261063	100325238	TBC1D23|ENST00000486274.5	+	100261063,100279648,100281741,100283606,100290577,100295086,100295301,100296171,100297922,100299238,100302066,100304845,100306436,100310402,100316098,100319068,100320776,100323586	100261545,100279760,100281847,100283811,100290701,100295211,100295348,100296275,100298045,100299331,100302237,100304888,100306543,100310542,100316187,100319204,100320971,100325238	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	27121399	27121423	27121399	-	RAMPAGE_only	8	8	21	0.576219	3.221097	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	0.904762
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	38354271	38354278	38354271	+	RAMPAGE_only	3	3	7	0.192073	2.584963	chr13	38354306	38354393	LINE|L1|L1M5	+	chr13	38349885	38363619	MSTRG.6797.5	+	38349885,38349998,38354238,38359300,38360710	38349921,38350055,38358132,38359333,38363619	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	120471823	120471877	120471823	-	RAMPAGE_only	3	3	23	0.631097	4.142915	chr9	120471770	120471851	LINE|L2|L2	+	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.521739
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	118020931	118020939	118020938	+	RAMPAGE_only	5	5	12	0.329268	3.095795	chr12	118020805	118020941	LINE|CR1|L3	+	chr12	118024915	118027392	RFC5|ENST00000472603.1	+	118024915,118025746,118026888	118025010,118025828,118027392	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65181215	65181223	65181215	+	High_confidence	3	3	8	0.219512	2.521641	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	52766777	52766778	52766777	-	RAMPAGE_only	7	7	11	0.301829	2.663533	chr10	52764896	52767603	LINE|L1|L1ME3	+	chr10	52765379	52771700	MBL2|ENST00000373968.3	-	52765379,52769246,52770669,52771448	52768510,52769315,52770786,52771700	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	106561950	106561951	106561950	-	High_confidence	40	40	41	1.125000	5.003056	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.756098
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	86369000	86369029	86369000	+	RAMPAGE_only	7	7	21	0.576219	3.725651	chr8	86368776	86369052	LINE|L2|L2c	+	chr8	86374040	86467476	WWP1|ENST00000265428.4	+	86374040,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	0.761905
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	55022798	55023022	55023021	-	RAMPAGE_only	13	13	185	5.076218	4.006677	chrX	55022304	55023039	LINE|L1|L1ME3G	+	chrX	55009112	55030977	MSTRG.26296.5	-	55009112,55014746,55015577,55017485,55020319,55025819,55027750,55030941	55009343,55015015,55015742,55017665,55024840,55026015,55027857,55030977	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	6639917	6639948	6639917	-	RAMPAGE_only	2	4	11	0.301829	2.921928	chr1	6639724	6639885	SINE|MIR|MIR	-	chr1	6634167	6645057	DNAJC11|ENST00000465508.5	-	6634167,6636116,6637197,6637446,6639901,6644557,6645040	6635700,6636246,6637340,6638364,6640057,6644674,6645057	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	85839704	85839705	85839704	+	High_confidence	178	180	235	6.448169	6.447404	chr8	85839524	85839864	LTR|ERVL-MaLR|THE1B	+	chr8	85839704	85908613	AC100801.1|ENST00000517368.1	+	85839704,85885934,85889578,85908312	85839785,85885994,85889653,85908613	0.625532
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	138065002	138065076	138065047	+	High_confidence	68	68	266	7.298778	6.856325	chr7	138064858	138065355	LTR|ERVL|LTR108a_Mam	+	chr7	138064794	138117986	MSTRG.23784.2	+	138064794,138076448,138088600,138091767,138097865,138105306,138106607,138107414,138113689,138116619	138065315,138076611,138088768,138091884,138097943,138105429,138106717,138107580,138113772,138117986	0.830827
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	102923573	102923574	102923573	-	RAMPAGE_only	17	17	17	0.466463	3.616875	chr12	102923568	102923702	LINE|L1|L1MC5	-	chr12	102836884	102917603	PAH|ENST00000553106.5	-	102836884,102840399,102843645,102844335,102846894,102851686,102852814,102855135,102866595,102877461,102894734,102912790,102917070	102839218,102840515,102843779,102844431,102846951,102851756,102852950,102855332,102866663,102877550,102894918,102912898,102917603	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	87860510	87860544	87860543	-	RAMPAGE_only	3	3	8	0.219512	3.000000	chr16	87860400	87860678	LTR|ERV1|MER4B	+	chr16	87830022	87863639	SLC7A5|ENST00000565644.5	-	87830022,87834413,87836497,87837844,87838713,87839701,87840428,87841049,87851723,87863589	87833025,87834591,87836647,87837941,87838817,87839825,87840473,87841155,87851849,87863639	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	89009895	89009908	89009895	-	RAMPAGE_only	181	186	607	16.655482	7.449988	chr4	89009447	89010155	LTR|ERVL|LTR62	-	chr4	88725954	89057172	FAM13A|ENST00000264344.9	-	88725954,88731326,88732001,88737471,88739029,88746931,88747630,88748951,88749770,88750423,88758753,88767552,88767982,88781164,88787752,88790585,88805010,88851019,88906378,88938087,88990972,89020459,89029459,89056937	88728659,88731428,88732198,88737555,88739125,88747015,88747851,88749033,88749909,88750637,88758901,88767595,88768059,88781351,88787932,88790627,88805052,88851183,88906462,88938241,88991150,89020669,89029649,89057172	0.667216
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	48868595	48868617	48868613	-	High_confidence	421	490	2171	59.570101	7.766764	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.981115
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	48492622	48492656	48492622	-	High_confidence	6	9	27	0.740853	4.453661	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.518519
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	158173024	158173025	158173024	-	High_confidence	9	10	13	0.356707	3.188722	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.769231
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	56436705	56436731	56436730	+	High_confidence	2	3	7	0.192073	2.584963	chr4	56436712	56437014	SINE|Alu|AluSx	+	chr4	56436151	56464579	PAICS|ENST00000512576.2	+	56436151,56441662,56446694,56448417,56448709,56450618,56451871,56453602,56459371	56436328,56441860,56446873,56448597,56448823,56450702,56452052,56453761,56464579	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	71803927	71803928	71803927	-	High_confidence	263	323	323	8.862802	6.606816	chr4	71803761	71803898	SINE|MIR|MIRc	-	chr4	71741692	71804041	GC|NM_001204307.1	-	71741692,71746150,71752517,71754410,71754977,71756711,71758041,71763407,71763803,71765431,71768300,71769330,71783960,71803925	71741870,71746205,71752650,71754508,71755107,71756914,71758171,71763502,71763936,71765643,71768433,71769400,71784054,71804041	0.996904
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	159770815	159770964	159770821	-	RAMPAGE_only	86	86	298	8.176826	4.330636	chr2	159770757	159770865	DNA|TcMar-Tigger|Tigger3c	+	chr2	159768852	159798242	CD302|ENST00000259053.5	-	159768852,159777937,159780004,159780881,159783358,159798131	159772053,159777964,159780178,159780998,159783469,159798242	0.996644
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	90902014	90902054	90902053	+	High_confidence	9	10	45	1.234756	4.924969	chr15	90901818	90902167	LTR|ERVL-MaLR|MLT1A0	-	chr15	90902217	90905336	MAN2A2|ENST00000558290.5	+	90902217,90903230,90904189,90905250	90902526,90903734,90904339,90905336	0.977778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	40650121	40650152	40650121	+	High_confidence	27	33	204	5.597559	6.055421	chr15	40650091	40650181	LINE|L2|L2c	+	chr15	40650126	40654977	KNL1|ENST00000532347.1	+	40650126,40650543,40651470,40652004,40654908	40650378,40650583,40651572,40652105,40654977	0.544118
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	147937505	147937543	147937519	+	RAMPAGE_only	3	4	19	0.521341	3.905765	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	MSTRG.26672.20	+	147940580,147943130,147944904,147945533,147948682	147940662,147943326,147945051,147945616,147950315	0.947368
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	28084056	28084116	28084072	-	High_confidence	6	6	43	1.179878	4.795581	chr8	28084027	28084332	SINE|Alu|AluSx1	+	chr8	28021963	28083871	NUGGC|ENST00000413272.6	-	28021963,28026961,28029265,28030309,28031242,28033539,28041050,28045526,28047506,28055964,28058257,28060425,28064521,28067513,28068215,28069543,28070251,28074367,28083774	28023462,28027052,28029402,28030418,28031381,28033697,28041215,28045660,28047612,28056054,28058276,28060601,28064731,28067744,28068438,28069652,28070356,28074456,28083871	0.767442
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	4173212	4173228	4173227	+	RAMPAGE_only	3	3	8	0.219512	2.750000	chr20	4173099	4173644	LINE|L1|L1ME3	-	chr20	4171709	4187747	SMOX|ENST00000379460.6	+	4171709,4175029,4177350,4181802,4182088,4183493,4187269	4171905,4175263,4177577,4181976,4182848,4183654,4187747	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	157279030	157279031	157279030	+	RAMPAGE_only	7	7	11	0.301829	3.121928	chr1	157275503	157279383	LTR|ERV1|HERVFH21-int	-	chr1	157280715	157283068	AL138900.3|ENST00000607010.1	+	157280715,157282577	157280853,157283068	0.727273
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	64773490	64773514	64773490	-	RAMPAGE_only	2	2	9	0.246951	2.947703	chr11	64773369	64773442	LINE|RTE-BovB|MamRTE1	-	chr11	64769277	64770639	SF1|ENST00000486960.5	-	64769277,64769425,64769963,64770255	64769338,64769609,64770053,64770639	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	69425679	69425709	69425691	+	High_confidence	36	70	182	4.993901	4.568476	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425689	69429621	AP000439.3|ENST00000545202.1	+	69425689,69427362	69425806,69429621	0.989011
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	5680248	5680252	5680251	-	High_confidence	6	6	13	0.356707	2.873141	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	62516819	62516848	62516843	-	High_confidence	5	7	29	0.795731	4.513153	chr1	62516540	62517265	LINE|L2|L2	+	chr1	62505790	62516841	DOCK7|ENST00000635286.1	-	62505790,62507961,62510576,62513470,62513715,62516800	62505816,62508058,62510673,62513606,62513898,62516841	0.896552
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	128099730	128099745	128099730	-	RAMPAGE_only	5	5	10	0.274390	2.947703	chr3	128099645	128099691	LINE|L2|L2b	-	chr3	128081181	128100744	RUVBL1|ENST00000478892.1	-	128081181,128082482,128087705,128097299,128098881,128100594	128081409,128082574,128087844,128097498,128098945,128100744	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	3111607	3111619	3111607	+	RAMPAGE_only	3	3	8	0.219512	3.000000	chr4	3111496	3112202	LINE|L1|HAL1	-	chr4	3115328	3121712	HTT|ENST00000506137.1	+	3115328,3116084,3121227	3115445,3116263,3121712	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	101434996	101434997	101434996	-	RAMPAGE_only	12	12	16	0.439024	3.375000	chr15	101434980	101435066	LINE|L2|L2b	-	chr15	101303928	101443663	PCSK6|ENST00000398185.6	-	101303928,101307212,101313375,101318318,101322519,101324849,101326376,101331650,101331851,101366195,101370334,101389463,101393211,101398403,101427891,101429986,101431319,101431989,101443555	101305355,101307325,101313505,101318422,101322607,101325046,101326479,101331689,101332031,101366332,101370523,101389564,101393424,101398576,101427980,101430063,101431463,101432100,101443663	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	34369398	34369411	34369398	+	RAMPAGE_only	3	4	11	0.301829	2.921928	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	11011249	11011269	11011249	-	RAMPAGE_only	5	5	19	0.521341	3.614369	chr6	11011082	11011387	SINE|Alu|AluY	+	chr6	10980758	11044314	ELOVL2|ENST00000354666.3	-	10980758,10989702,10990317,10995006,11000086,11005371,11010745,11044227	10983906,10989837,10990442,10995178,11000164,11005559,11010809,11044314	0.684211
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	150567272	150567288	150567287	+	High_confidence	4	5	8	0.219512	3.000000	chr7	150567129	150567290	DNA|hAT-Charlie|MER3	-	chr7	150567276	150573955	GIMAP4|ENST00000255945.3	+	150567276,150569887,150572128	150567437,150569959,150573955	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	95088521	95088543	95088542	+	RAMPAGE_only	14	14	24	0.658536	3.708132	chr1	95088376	95088833	LTR|ERVL-MaLR|MLT1H	+	chr1	95092516	95197607	TMEM56|NM_001199679.1	+	95092516,95143890,95148701,95150207,95151324,95173815,95191549	95092881,95144056,95148791,95150266,95151419,95173889,95197607	0.958333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	72363509	72363536	72363509	-	High_confidence	2	2	11	0.301829	2.721928	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.727273
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	50321250	50321263	50321262	+	RAMPAGE_only	5	5	19	0.521341	3.794653	chr14	50321258	50321358	SINE|MIR|MIR3	-	chr14	50312640	50334907	ATP5S|ENST00000311459.11	+	50312640,50321482,50322510,50323944,50325608	50313060,50321594,50322719,50324116,50334907	0.578947
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	15006394	15006419	15006418	+	RAMPAGE_only	3	3	10	0.274390	2.921928	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	113391528	113391541	113391528	-	RAMPAGE_only	6	6	20	0.548780	3.681881	chr9	113391203	113391489	SINE|Alu|AluJb	-	chr9	113386311	113401120	ALAD|NM_001317745.1	-	113386311,113388976,113389437,113389598,113389772,113390404,113390592,113390797,113391526,113393446,113400933	113388361,113389106,113389524,113389686,113389828,113390493,113390676,113390933,113391623,113393634,113401120	0.700000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	73841948	73841953	73841948	-	High_confidence	6	6	16	0.439024	3.106891	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	153967486	153967517	153967486	+	High_confidence	15	20	72	1.975609	5.197160	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	101467055	101467065	101467063	-	RAMPAGE_only	3	4	8	0.219512	2.807355	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	87040212	87040223	87040212	-	RAMPAGE_only	5	5	17	0.466463	3.969816	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86879938	87059631	KIAA1324L|ENST00000444627.5	-	86879938,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87059324	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912171,86913065,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87059631	0.529412
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50785210	50785227	50785222	+	RAMPAGE_only	5	6	16	0.439024	3.640224	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.812500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	26956584	26956589	26956588	-	High_confidence	3	3	7	0.192073	2.521641	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	37391834	37391850	37391834	+	RAMPAGE_only	4	4	14	0.384146	3.546594	chr5	37391315	37391858	LINE|L1|L1MB3	-	chr5	37379309	37752672	WDR70|NM_018034.2	+	37379309,37379488,37381601,37391999,37396374,37437921,37443238,37479833,37516513,37605063,37697654,37701057,37702948,37721114,37722854,37724933,37726882,37752485	37379392,37379554,37381685,37392120,37396570,37437981,37443372,37479987,37516590,37605238,37697754,37701142,37703087,37721215,37722934,37725050,37727045,37752672	0.785714
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	48753676	48753677	48753676	-	High_confidence	26	27	27	0.740853	4.008132	chr19	48753519	48753902	LTR|ERVK|LTR13A	-	chr19	48748010	48753660	FUT1|ENST00000645652.1	-	48748010,48752489,48752891,48753324,48753647	48751283,48752725,48753122,48753563,48753660	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	104257384	104257415	104257414	+	RAMPAGE_only	7	8	36	0.987805	4.297300	chr10	104257342	104257640	SINE|Alu|AluJb	-	chr10	104254985	104267365	GSTO1|ENST00000445155.5	+	104254985,104259575,104262978,104266083,104267251	104255271,104259798,104263077,104266190,104267365	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	35228564	35228565	35228564	+	RAMPAGE_only	15	15	16	0.439024	3.189898	chr11	35228568	35228735	SINE|MIR|MIRb	+	chr11	35219343	35229789	CD44|ENST00000525469.1	+	35219343,35229128	35219387,35229789	0.937500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	174242824	174242842	174242841	+	RAMPAGE_only	3	3	9	0.246951	2.947703	chr1	174242878	174242924	LINE|L2|L2a	+	chr1	174159580	174246346	RABGAP1L|ENST00000635248.1	+	174159580,174219124,174220971,174231144,174241482,174242981,174244297	174159657,174219295,174221164,174231355,174241657,174243179,174246346	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	197299271	197299320	197299271	-	High_confidence	5	5	26	0.713414	4.373661	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197042559	197299272	DLG1|NM_001290983.1	-	197042559,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299272	0.923077
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	113397124	113397164	113397124	-	High_confidence	5	5	16	0.439024	3.625000	chr9	113396986	113397098	SINE|MIR|MIR3	-	chr9	113392131	113397402	ALAD|ENST00000452726.1	-	113392131,113393446,113397045	113392169,113393634,113397402	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	69624289	69624387	69624376	+	High_confidence	199	209	1748	47.963398	7.591033	chr12	69624339	69624616	SINE|Alu|AluSc5	-	chr12	69624136	69785016	MSTRG.6079.1	+	69624136,69624856,69638809,69755383,69756404,69784719	69624461,69624950,69639014,69755659,69756663,69785016	0.635011
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	29760809	29760814	29760809	+	RAMPAGE_only	3	3	8	0.219512	2.750000	chr16	29760474	29761018	LTR|ERVL-MaLR|MLT1G1	+	chr16	29778239	29781648	ZG16|NM_152338.3	+	29778239,29779259,29779504,29780103	29778306,29779321,29779637,29781648	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	71198186	71198207	71198191	-	High_confidence	5	5	16	0.439024	3.577820	chrX	71198068	71198187	SINE|MIR|MIR3	-	chrX	71183558	71198175	AL590764.1|ENST00000450860.1	-	71183558,71197908	71184017,71198175	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	68948114	68948115	68948114	-	RAMPAGE_only	8	8	10	0.274390	2.947703	chr4	68946743	68948416	DNA|TcMar-Tigger|Tigger1	-	chr4	68929449	68951361	UGT2A3|ENST00000503012.1	-	68929449,68930545,68931154,68932627,68943281,68945305,68951045	68930092,68930765,68931242,68932759,68943378,68945454,68951361	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	187024854	187024855	187024854	+	RAMPAGE_only	10	10	11	0.301829	3.121928	chr3	187024583	187024927	LINE|L1|L1MC5a	+	chr3	187021876	187078553	ST6GAL1|NM_003032.2	+	187021876,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	194486575	194486605	194486577	-	High_confidence	2	3	10	0.274390	2.947703	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402688	194486659	MSTRG.19013.6	-	194402688,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194486659	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	51235284	51235310	51235309	+	High_confidence	4	5	12	0.329268	3.459432	chr1	51235303	51235811	LINE|L2|L2b	-	chr1	51236270	51273455	RNF11|ENST00000242719.3	+	51236270,51269955,51271150	51236879,51270125,51273455	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	196975033	196975064	196975063	+	RAMPAGE_only	8	11	31	0.850609	3.878451	chr1	196974981	196976153	LINE|L2|L2	-	chr1	196977536	197009674	CFHR5|NM_030787.3	+	196977536,196982884,196983960,196994079,196995716,196996021,196998127,197002481,197004660,197008486	196977722,196983079,196984137,196994256,196995899,196996201,196998304,197002664,197004843,197009674	0.806452
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	80059918	80059933	80059918	+	High_confidence	99	111	246	6.749998	5.372050	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.959350
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65430347	65430607	65430606	+	RAMPAGE_only	22	23	402	11.030484	6.123189	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422799	65445488	MSTRG.4447.4	+	65422799,65423294,65437240,65444287,65445449	65423212,65437184,65444263,65445407,65445488	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	42473509	42473540	42473539	-	RAMPAGE_only	2	3	9	0.246951	2.500000	chr8	42473283	42473600	LINE|L2|L2a	+	chr8	42472178	42501243	SLC20A2|ENST00000517366.1	-	42472178,42501186	42472654,42501243	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100929920	100929921	100929920	+	RAMPAGE_only	33	41	48	1.317073	5.075078	chr14	100929864	100929989	LINE|L1|L1ME5	+	chr14	100906043	100947076	MSTRG.8059.73	+	100906043,100906935,100913431,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100906163,100910304,100931545,100936310,100937488,100938956,100940450,100942838,100944925,100947076	0.937500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	123162659	123162678	123162659	+	RAMPAGE_only	1	1	7	0.192073	2.584963	chr10	123162608	123162659	DNA|hAT-Ac|OldhAT1	-	chr10	123154414	123165365	BUB3|ENST00000368858.9	+	123154414,123154917,123155657,123157728,123160406,123162235,123162611,123165046	123154485,123155112,123155727,123157880,123160565,123162413,123162828,123165365	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	43762631	43762670	43762659	+	RAMPAGE_only	8	8	26	0.713414	4.220176	chr7	43762606	43762916	SINE|Alu|AluSc	-	chr7	43758686	43807342	BLVRA|ENST00000402924.5	+	43758686,43760016,43771137,43787903,43791248,43792714,43800464,43803675,43806976	43758734,43760110,43771170,43788025,43791368,43792812,43800572,43803847,43807342	0.846154
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	102397714	102397992	102397757	-	RAMPAGE_only	19	21	181	4.966462	6.109847	chr11	102397661	102397799	DNA|hAT-Charlie|Charlie16a	-	chr11	102396335	102444529	MSTRG.4931.3	-	102396335,102401538,102401915,102419073	102398891,102401692,102402206,102444529	0.994475
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	158612209	158612371	158612272	-	High_confidence	12	13	80	2.195121	5.077856	chr1	158612183	158612302	LINE|L2|L2c	+	chr1	158611207	158612025	SPTA1|ENST00000485680.1	-	158611207,158611785	158611389,158612025	0.525000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	138065138	138065140	138065139	+	High_confidence	6	7	11	0.301829	3.321928	chr7	138064858	138065355	LTR|ERVL|LTR108a_Mam	+	chr7	138064794	138117986	MSTRG.23784.2	+	138064794,138076448,138088600,138091767,138097865,138105306,138106607,138107414,138113689,138116619	138065315,138076611,138088768,138091884,138097943,138105429,138106717,138107580,138113772,138117986	0.818182
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	58306091	58306116	58306091	+	High_confidence	3	3	14	0.384146	2.873141	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58315183	MSTRG.14168.30	+	58305376,58306087,58312165	58305445,58306216,58315183	0.642857
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	118212348	118212354	118212353	-	High_confidence	21	21	44	1.207317	3.880180	chr11	118212116	118212308	SINE|MIR|MIRb	-	chr11	118205658	118212470	JAML|ENST00000531536.1	-	118205658,118210486,118212406	118205991,118210712,118212470	0.863636
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	9789953	9789971	9789953	-	High_confidence	7	7	26	0.713414	4.418296	chr11	9789856	9790049	DNA|hAT-Tip100|MER115	-	chr11	9784932	9789204	SBF2|ENST00000532095.1	-	9784932,9787633,9789108	9785318,9787738,9789204	0.653846
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	1721622	1721637	1721636	-	High_confidence	6	8	14	0.384146	3.334679	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.642857
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	143707921	143707973	143707968	+	RAMPAGE_only	39	39	109	2.990853	5.741147	chr6	143707720	143708120	LTR|ERVL-MaLR|MSTA	-	chr6	143678067	143755499	PHACTR2|ENST00000397980.3	+	143678067,143712015,143748984,143753753,143755304	143678209,143712183,143749065,143753912,143755499	0.908257
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	34369434	34369436	34369434	+	RAMPAGE_only	3	5	7	0.192073	2.521641	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	26395705	26395706	26395705	+	High_confidence	25	25	25	0.685975	4.213661	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.920000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	102275542	102275571	102275542	-	RAMPAGE_only	4	4	21	0.576219	3.721928	chr8	102275368	102275493	LINE|L1|L1ME3E	-	chr8	102271193	102276820	UBR5|ENST00000521566.1	-	102271193,102272528,102275520,102275707,102276773	102271245,102272772,102275619,102275828,102276820	0.809524
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65441659	65441701	65441680	+	RAMPAGE_only	6	6	20	0.548780	3.997670	chr11	65441504	65441864	LINE|L1|L1MB7	-	chr11	65422799	65445488	MSTRG.4447.4	+	65422799,65423294,65437240,65444287,65445449	65423212,65437184,65444263,65445407,65445488	0.950000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	138065235	138065287	138065235	+	High_confidence	3	3	32	0.878048	4.825164	chr7	138064858	138065355	LTR|ERVL|LTR108a_Mam	+	chr7	138064794	138117986	MSTRG.23784.2	+	138064794,138076448,138088600,138091767,138097865,138105306,138106607,138107414,138113689,138116619	138065315,138076611,138088768,138091884,138097943,138105429,138106717,138107580,138113772,138117986	0.531250
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	6057856	6057876	6057875	-	RAMPAGE_only	3	3	12	0.329268	2.918296	chr7	6057659	6057924	SINE|Alu|AluSx1	-	chr7	6046722	6059056	EIF2AK1|ENST00000463213.5	-	6046722,6048806,6049911,6054545,6058965	6047091,6048844,6050045,6054704,6059056	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	37297344	37297345	37297344	+	High_confidence	7	7	7	0.192073	2.521641	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	6703158	6703164	6703163	-	High_confidence	5	5	10	0.274390	2.947703	chr19	6703151	6703268	DNA|hAT-Tip100|ORSL	-	chr19	6697661	6702872	C3|ENST00000602053.1	-	6697661,6702126,6702470	6697794,6702212,6702872	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	136650165	136650166	136650165	-	RAMPAGE_only	4	4	7	0.192073	2.807355	chr9	136649904	136650385	LINE|L1|L1MA8	-	chr9	136648609	136660421	HSPC324|ENST00000411904.1	-	136648609,136660320	136649065,136660421	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	168550281	168550340	168550296	-	RAMPAGE_only	11	11	28	0.768292	4.208410	chr5	168550033	168550400	DNA|TcMar-Tigger|MER47A	+	chr5	168548494	168579600	PANK3|ENST00000239231.6	-	168548494,168559031,168561392,168563888,168566012,168568645,168579255	168557621,168559157,168561516,168564065,168566266,168568998,168579600	0.964286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	16383530	16383536	16383530	-	RAMPAGE_only	2	3	8	0.219512	2.500000	chr11	16383436	16383642	SINE|MIR|MIRb	+	chr11	16318471	16382398	SOX6|ENST00000526673.1	-	16318471,16341011,16382287	16318653,16341252,16382398	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	54296761	54296786	54296785	-	RAMPAGE_only	3	3	7	0.192073	2.521641	chr12	54296700	54296856	SINE|MIR|MIR3	+	chr12	54292106	54295779	NFE2|NM_006163.2	-	54292106,54295134,54295543	54293381,54295304,54295779	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	17132207	17132307	17132207	+	High_confidence	25	25	160	4.390242	6.591080	chr7	17132206	17132531	LTR|ERVL-MaLR|MLT1D	+	chr7	17132189	17346150	AHR|ENST00000642825.1	+	17132189,17204702,17246973,17296296,17296491,17309935,17322500,17327758,17329951,17330755,17333911,17334886,17335644,17338985,17342920	17132541,17204765,17247726,17296385,17296624,17310123,17322607,17327848,17330075,17330886,17334114,17334996,17335786,17340228,17346150	0.556250
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	45594427	45594440	45594427	-	High_confidence	2	2	7	0.192073	2.807355	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45454592	45594491	MSTRG.2953.4	-	45454592,45459119,45461230,45464238,45489366,45533109,45553111,45590523,45594234	45458543,45459267,45461411,45464327,45489417,45533289,45553204,45590574,45594491	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	55982724	55982800	55982799	-	High_confidence	13	14	55	1.509146	4.944717	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.927273
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	33818364	33818395	33818370	+	High_confidence	5	5	16	0.439024	3.702820	chr13	33818361	33818761	LINE|L2|L2a	-	chr13	33818068	33837507	RFC3|NM_002915.3	+	33818068,33821131,33823916,33825788,33829835,33830718,33831255,33835147,33836103	33818265,33821269,33823984,33825886,33830017,33830855,33831354,33835217,33837507	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	136231829	136231850	136231845	-	RAMPAGE_only	15	22	66	1.810975	5.161948	chr9	136231694	136231827	SINE|MIR|MIRc	-	chr9	136211263	136224877	QSOX2|ENST00000455222.1	-	136211263,136215153,136216599,136218678,136219029,136224006,136224860	136211452,136215304,136216722,136218808,136219164,136224112,136224877	0.530303
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	72453976	72453977	72453976	-	RAMPAGE_only	20	20	20	0.548780	3.821928	chr2	72453809	72454152	LTR|ERVL-MaLR|THE1C	-	chr2	72179014	72354278	EXOC6B|ENST00000490919.5	-	72179014,72184074,72334946,72354217	72179461,72184187,72335020,72354278	0.850000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	6820197	6820202	6820197	+	RAMPAGE_only	3	3	8	0.219512	2.521641	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6853047	6888193	CAMTA1|ENST00000470648.5	+	6853047,6871756,6887653	6853189,6871840,6888193	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	78620056	78620058	78620056	+	High_confidence	65	106	107	2.935975	5.752843	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.906542
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	40453546	40453547	40453546	-	High_confidence	10	10	15	0.411585	3.324863	chr2	40453521	40453703	DNA|hAT-Charlie|MER5B	+	chr2	40430019	40453438	SLC8A1|ENST00000455476.5	-	40430019,40453160	40430304,40453438	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	60183258	60183267	60183258	-	High_confidence	7	7	13	0.356707	3.251629	chr11	60183230	60183437	SINE|MIR|MIRb	+	chr11	60172496	60183223	MS4A6A|ENST00000412309.6	-	60172496,60175401,60178259,60179830,60181580,60183135	60173129,60175611,60178316,60179965,60181741,60183223	0.769231
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	121340477	121340590	121340583	-	RAMPAGE_only	21	21	87	2.387194	5.694444	chr9	121340456	121340767	SINE|Alu|AluSq2	+	chr9	121339076	121370205	STOM|ENST00000286713.6	-	121339076,121348014,121349119,121353219,121354600,121356052,121370126	121341408,121348149,121349323,121353302,121354673,121356156,121370205	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	17282810	17282860	17282821	+	RAMPAGE_only	30	31	97	2.661584	5.817704	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.917526
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	144303083	144303100	144303083	+	RAMPAGE_only	33	37	74	2.030487	5.030521	chr6	144302995	144303202	LINE|L2|L2c	-	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.648649
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	54759973	54759974	54759973	-	High_confidence	7	7	8	0.219512	2.521641	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	56959563	56959589	56959563	-	RAMPAGE_only	3	3	9	0.246951	2.725481	chr1	56959222	56959568	LINE|L2|L2c	-	chr1	56929209	56966015	C8B|ENST00000371237.8	-	56929209,56931809,56933334,56940848,56943695,56945820,56949554,56952047,56954685,56956768,56960019,56965856	56929558,56931878,56933488,56941012,56943824,56946061,56949752,56952180,56954827,56956910,56960176,56966015	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	32927967	32927984	32927976	+	High_confidence	172	187	546	14.981702	6.894395	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927963	33044802	MSTRG.24263.1	+	32927963,32996200,33041634,33044366	32928093,32996316,33041771,33044802	0.787546
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	35352737	35352738	35352737	+	RAMPAGE_only	20	20	27	0.740853	3.703465	chr10	35352603	35352744	LINE|L2|L2c	-	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	39310301	39310319	39310301	+	RAMPAGE_only	2	2	8	0.219512	2.500000	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	48693146	48693220	48693170	+	High_confidence	10	13	85	2.332316	5.463466	chr22	48693219	48693333	LINE|L1|L1ME4c	+	chr22	48693246	48750408	FAM19A5|ENST00000406880.1	+	48693246,48707716,48749838	48693381,48707844,48750408	0.941176
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	46269598	46269624	46269623	-	High_confidence	4	4	14	0.384146	3.807355	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	34588450	34588453	34588450	-	High_confidence	7	10	16	0.439024	3.750000	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.812500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	100813661	100813683	100813661	-	High_confidence	2	2	12	0.329268	3.277613	chr7	100813306	100813615	SINE|Alu|AluSx1	-	chr7	100807364	100813339	EPHB4|ENST00000467515.1	-	100807364,100812746,100813094	100807580,100812994,100813339	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	129488803	129488905	129488856	+	High_confidence	54	54	255	6.996949	5.559729	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.945098
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	148319974	148319975	148319974	+	RAMPAGE_only	5	7	7	0.192073	2.521641	chr5	148319975	148321427	LINE|L1|L1P1	+	chr5	148321202	148339722	SPINK9|ENST00000511717.6	+	148321202,148323678,148336421,148338477,148339666	148321400,148323868,148336453,148338605,148339722	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	9912678	9912717	9912716	+	RAMPAGE_only	5	5	13	0.356707	3.584963	chr2	9912706	9912764	SINE|MIR|MIRb	-	chr2	9843524	9933946	TAF1B|ENST00000434858.5	+	9843524,9845219,9849372,9851540,9854325,9868275,9882705,9904858,9910735,9911510,9913158,9919040,9919597,9933782	9843559,9845318,9849460,9851638,9854421,9868429,9882805,9905006,9910913,9911557,9913249,9919111,9919820,9933946	0.692308
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	66150634	66150663	66150662	+	High_confidence	4	4	17	0.466463	3.690117	chr7	66150546	66150667	SINE|MIR|MIR3	+	chr7	66150662	66152652	CRCP|ENST00000492264.1	+	66150662,66152207	66150948,66152652	0.941176
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	89888929	89888930	89888929	+	RAMPAGE_only	7	8	11	0.301829	2.646439	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.818182
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	20258626	20258689	20258649	-	High_confidence	5	6	27	0.740853	4.293661	chr21	20258185	20258931	LTR|ERVL|MER54B	-	chr21	20256751	20258820	LINC02573|ENST00000436373.1	-	20256751,20258551	20257346,20258820	0.629630
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	231072213	231072336	231072254	+	RAMPAGE_only	8	8	51	1.399390	5.078696	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.921569
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	60887083	60887094	60887093	+	High_confidence	4	4	11	0.301829	3.277613	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	131844453	131844473	131844472	+	High_confidence	250	275	1086	29.798770	6.955972	chr6	131844197	131845043	DNA|TcMar-Tigger|Tigger6a	+	chr6	131844448	131893821	MSTRG.22416.7	+	131844448,131847775,131849989,131851141,131852174,131854925,131858667,131860386,131861594,131864505,131864865,131868017,131869357,131872069,131872922,131874267,131875775,131876991,131878541,131879879,131882344,131883693,131884930,131886561,131890340	131844980,131847848,131850106,131851267,131852235,131855023,131858747,131860506,131861704,131864571,131864938,131868126,131869489,131872101,131873050,131874337,131875863,131877161,131878593,131880034,131882474,131883774,131885063,131886724,131893821	0.965930
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	27229197	27229210	27229197	-	RAMPAGE_only	3	3	9	0.246951	2.500000	chr16	27229101	27229466	LINE|L2|L2b	+	chr16	27225024	27268741	NSMCE1|ENST00000565070.5	-	27225024,27225725,27233000,27234187,27235177,27257434,27268705	27225236,27226836,27233147,27234265,27235299,27257581,27268741	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	27921232	27921259	27921253	-	RAMPAGE_only	16	16	68	1.865853	5.463634	chr10	27921201	27921324	SINE|Alu|FRAM	+	chr10	27812163	27981917	ARMC4|NM_001290021.1	-	27812163,27853241,27860624,27862433,27907662,27935009,27936725,27939896,27940562,27944221,27944815,27961567,27981465,27981828	27812625,27853363,27860846,27862622,27907777,27935252,27936880,27940007,27940805,27944431,27944962,27961715,27981582,27981917	0.926471
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	108451086	108451109	108451086	+	RAMPAGE_only	3	3	10	0.274390	3.121928	chr2	108451073	108451151	LINE|RTE-BovB|MamRTE1	-	chr2	108449883	108472899	GCC2|ENST00000409896.1	+	108449883,108451027,108452398,108468979,108469650,108472826	108449994,108451112,108452466,108469084,108472116,108472899	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	154976031	154976053	154976031	+	High_confidence	7	7	12	0.329268	2.751629	chr1	154975847	154976087	LINE|L1|L1PREC2	+	chr1	154975538	154978916	CKS1B|ENST00000473344.1	+	154975538,154977986,154978724	154975608,154978114,154978916	0.583333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	29766482	29766487	29766482	+	High_confidence	2	2	7	0.192073	2.584963	chr22	29766164	29766544	LINE|L2|L2b	+	chr22	29767368	29770413	UQCR10|NM_001003684.1	+	29767368,29769677	29767607,29770413	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	52806905	52807104	52807084	+	RAMPAGE_only	84	148	479	13.143288	5.614456	chr3	52807123	52807216	LINE|CR1|X7B_LINE	+	chr3	52804805	52808796	ITIH3|ENST00000493136.1	+	52804805,52806292,52806900,52807746,52808109,52808551	52806138,52806406,52807105,52807916,52808221,52808796	0.995825
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	39083039	39083066	39083065	+	RAMPAGE_only	4	4	10	0.274390	2.947703	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.700000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	8788252	8788253	8788252	+	High_confidence	135	138	159	4.362803	5.906932	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.893082
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	37382373	37382374	37382373	+	High_confidence	7	7	7	0.192073	2.807355	chr20	37382266	37382416	SINE|MIR|MIR	-	chr20	37382603	37405432	SRC|ENST00000358208.8	+	37382603,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	223886599	223886608	223886599	-	RAMPAGE_only	5	5	10	0.274390	2.725481	chr1	223886338	223886559	SINE|MIR|MIRb	-	chr1	223779892	223845972	TP53BP2|NM_005426.2	-	223779892,223784114,223789007,223792388,223793302,223795814,223798214,223799898,223800699,223802115,223802730,223803270,223804173,223806845,223810430,223814239,223818205,223821219,223845653	223780894,223784314,223789174,223792522,223793440,223796590,223798677,223800047,223800810,223802344,223802895,223803452,223804348,223806947,223810513,223814353,223818337,223821367,223845972	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	43631519	43631523	43631519	+	RAMPAGE_only	5	5	16	0.439024	3.506891	chr6	43631476	43631785	SINE|Alu|AluJo	-	chr6	43629541	43640952	MAD2L1BP|NM_001003690.1	+	43629541,43633193,43636380,43640020	43629769,43633315,43636646,43640952	0.562500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	55678461	55678462	55678461	+	RAMPAGE_only	11	11	12	0.329268	3.277613	chr19	55678409	55678486	LINE|L2|L2c	-	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.583333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	58721728	58721754	58721728	-	RAMPAGE_only	3	4	10	0.274390	2.921928	chr11	58721377	58721714	LTR|ERV1|MER4-int	-	chr11	58708757	58724496	GLYAT|ENST00000611865.4	-	58708757,58710589,58712759,58715315,58724415	58710168,58710761,58712886,58715423,58724496	0.700000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	74607357	74607446	74607445	-	RAMPAGE_only	30	35	147	4.033535	5.139560	chr15	74607346	74607570	LINE|L2|L2c	+	chr15	74598918	74610575	MSTRG.8977.1	-	74598918,74603686,74604284,74608213,74609601,74610302	74602781,74603754,74608015,74609129,74609759,74610575	0.993197
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	179877276	179877368	179877305	-	High_confidence	3	3	23	0.631097	3.823068	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179839966	179877799	MSTRG.2117.1	-	179839966,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877799	0.913043
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	110170695	110170698	110170695	+	RAMPAGE_only	5	5	9	0.246951	3.000000	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	31587009	31587061	31587009	+	High_confidence	44	74	248	6.804876	5.640032	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.959677
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	62305836	62305863	62305855	+	High_confidence	2	3	10	0.274390	2.947703	chr12	62305734	62306281	LTR|ERVL-MaLR|MLT1F	+	chr12	62305594	62325933	USP15|ENST00000546694.1	+	62305594,62314789,62321463,62325871	62306058,62314916,62321609,62325933	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	4678146	4678177	4678146	-	High_confidence	14	15	45	1.234756	4.277250	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.822222
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	31346216	31346227	31346216	+	RAMPAGE_only	3	3	10	0.274390	2.947703	chr1	31346007	31346373	LINE|L2|L2c	-	chr1	31297035	31364552	ZCCHC17|ENST00000627541.1	+	31297035,31319108,31337174,31338956,31346639,31348828,31364031	31297096,31319166,31337275,31339048,31346818,31348974,31364552	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	196065740	196065744	196065740	-	High_confidence	4	4	8	0.219512	2.521641	chr3	196065710	196066018	SINE|Alu|AluSg	+	chr3	196053508	196065550	MSTRG.19056.6	-	196053508,196055079,196058283,196058573,196060179,196062581,196065442	196053558,196055301,196058365,196058632,196060247,196064428,196065550	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	10919637	10919640	10919639	+	High_confidence	4	6	8	0.219512	2.807355	chr19	10919677	10919748	LINE|L2|L2	+	chr19	10919928	10921900	CARM1|ENST00000586298.1	+	10919928,10920658,10920833,10921049,10921374,10921614	10919966,10920748,10920946,10921127,10921443,10921900	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	8058858	8058918	8058868	+	RAMPAGE_only	2	2	18	0.493902	3.969816	chr17	8058795	8061901	LTR|ERVK|HERVK-int	+	chr17	8056890	8073936	MSTRG.10790.1	+	8056890,8064913	8063060,8073936	0.944444
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	121313981	121314021	121314020	+	RAMPAGE_only	64	65	191	5.240852	5.254147	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	54666693	54666729	54666728	+	RAMPAGE_only	3	3	9	0.246951	3.000000	chr19	54666753	54667007	LINE|L2|L2	+	chr19	54663019	54668397	LILRB4|ENST00000391733.7	+	54663019,54663531,54663753,54664185,54664798,54665129,54665814,54666239,54666398,54666693,54667634,54667872	54663067,54663567,54664038,54664485,54664849,54665180,54665931,54666315,54666436,54666749,54667793,54668397	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	41365788	41365838	41365788	+	High_confidence	3	3	14	0.384146	2.931209	chr15	41365708	41366019	SINE|Alu|AluSc8	-	chr15	41365746	41377288	NUSAP1|ENST00000560318.1	+	41365746,41371526,41375711,41377195	41365863,41371684,41375828,41377288	0.642857
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	50267477	50267494	50267493	+	High_confidence	4	4	12	0.329268	3.277613	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267498	50278427	SMIM25|ENST00000445003.5	+	50267498,50277490,50278176	50267663,50277613,50278427	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	2726956	2726963	2726962	+	High_confidence	11	12	22	0.603658	3.880180	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.636364
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	96894219	96894232	96894231	-	High_confidence	6	6	14	0.384146	3.180833	chr2	96894203	96894258	SINE|MIR|MIRb	+	chr2	96876025	96895142	FAM178B|ENST00000470789.5	-	96876025,96877889,96878415,96893925,96895060	96876308,96878042,96878493,96894051,96895142	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	144303041	144303045	144303044	+	RAMPAGE_only	5	5	9	0.246951	2.947703	chr6	144302995	144303202	LINE|L2|L2c	-	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	7103839	7103851	7103839	+	High_confidence	3	3	6	0.164634	2.584963	chr9	7103879	7104109	LINE|L2|L2b	+	chr9	7104267	7170212	KDM4C|ENST00000490806.5	+	7104267,7128065,7165237,7169797	7104354,7128236,7165357,7170212	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	75127271	75127272	75127271	-	RAMPAGE_only	4	4	7	0.192073	2.584963	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	19398258	19398288	19398258	-	RAMPAGE_only	13	13	43	1.179878	4.023037	chr22	19398248	19398305	SINE|MIR|MIR3	-	chr22	19330697	19431696	HIRA|ENST00000340170.8	-	19330697,19351357,19353355,19353995,19355759,19356229,19375630,19377868,19383619,19385520,19387710,19388483,19392100,19394341,19396786,19397991,19405785,19407183,19408482,19410715,19431439	19331556,19351446,19353519,19354118,19355865,19356288,19375792,19378066,19383705,19385736,19387816,19388554,19392214,19394509,19396947,19398087,19405880,19407274,19408593,19410778,19431696	0.953488
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	45027006	45027012	45027006	+	High_confidence	4	4	8	0.219512	3.000000	chr7	45026988	45027096	SINE|MIR|MIR3	-	chr7	45027014	45064494	CCM2|ENST00000478169.5	+	45027014,45038252,45063917,45064462	45027266,45038426,45064001,45064494	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	119743318	119743324	119743318	+	RAMPAGE_only	2	3	7	0.192073	2.584963	chr10	119743296	119743604	LINE|L2|L2c	-	chr10	119750870	119823881	INPP5F|ENST00000649957.1	+	119750870,119751075,119781634,119791516,119791868,119792156,119796714,119797460,119798542,119804172,119805383,119806359,119807931,119810099,119811756,119820845,119822430,119823070,119823814	119750942,119751156,119781771,119791645,119792036,119792213,119796913,119797640,119798610,119804297,119805461,119806480,119808060,119810217,119811955,119820917,119822504,119823199,119823881	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	74199404	74199438	74199404	+	High_confidence	4	4	12	0.329268	3.418296	chr8	74199086	74199513	LINE|L2|L2a	+	chr8	74199395	74208441	AC087627.1|ENST00000522339.2	+	74199395,74207358,74207720	74199532,74207493,74208441	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	25636440	25636489	25636450	+	High_confidence	105	136	496	13.609751	5.853643	chr15	25636095	25636572	LTR|ERVK|MER9B	+	chr15	25636443	25643734	MSTRG.8186.1	+	25636443,25640663	25636684,25643734	0.965726
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	103353924	103353957	103353956	+	High_confidence	6	6	17	0.466463	3.381580	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.882353
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	7946875	7946879	7946878	+	High_confidence	7	7	16	0.439024	3.640224	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.812500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	18170439	18170476	18170461	+	High_confidence	14	14	56	1.536585	5.436732	chr8	18170361	18170677	LTR|ERV1|MER57C1	+	chr8	18170461	18223689	NAT1|NM_001160179.2	+	18170461,18170678,18209780,18219410,18222041	18170507,18170739,18209955,18219489,18223689	0.553571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	152486193	152486223	152486209	-	RAMPAGE_only	10	12	36	0.987805	4.572469	chr4	152485881	152487007	DNA|TcMar-Tigger|Tigger3b	-	chr4	152322874	152471175	MSTRG.19956.10	-	152322874,152324183,152326005,152328207,152329671,152330731,152332595,152337801,152346929,152350041,152411302,152412479,152469940	152323149,152324394,152326231,152328389,152329785,152330868,152332719,152337936,152347071,152350124,152411872,152412529,152471175	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	67131712	67131745	67131744	+	RAMPAGE_only	13	13	30	0.823170	4.487123	chr8	67131654	67131745	LINE|L1|L1ME3B	-	chr8	67083847	67196614	CSPP1|NM_001291339.1	+	67083847,67086006,67093542,67095292,67103036,67105904,67111971,67113804,67115913,67118247,67118742,67131950,67137455,67154023,67158446,67158990,67161810,67163731,67164390,67172415,67175295,67177679,67179862,67190649,67193463,67195381	67084338,67086110,67093641,67095732,67103135,67105975,67112065,67113862,67116122,67118369,67118821,67132080,67137603,67154136,67158596,67159137,67161915,67163798,67164508,67172555,67175436,67177726,67179926,67190759,67193602,67196614	0.766667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	32403108	32403236	32403148	-	RAMPAGE_only	10	13	113	3.100609	5.585091	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	45631147	45631148	45631147	+	High_confidence	7	7	8	0.219512	2.521641	chr15	45630952	45631306	LTR|ERVL-MaLR|THE1A	+	chr15	45631147	45691280	SQOR|ENST00000568606.5	+	45631147,45631926,45658906,45661954,45669927,45673606,45676100,45682477,45688336,45689038,45690972	45631230,45632015,45659157,45662125,45669981,45673801,45676310,45682661,45688404,45689217,45691280	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	20826546	20826569	20826546	+	RAMPAGE_only	3	3	12	0.329268	3.095795	chr16	20826581	20826930	LINE|L1|L1ME4a	+	chr16	20821036	20828535	REXO5|ENST00000564200.1	+	20821036,20821761,20824438,20825832,20827057,20827352,20828434	20821070,20821902,20824527,20825948,20827196,20827447,20828535	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	123390725	123390761	123390760	+	High_confidence	16	16	55	1.509146	5.185353	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.854545
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	196741368	196741454	196741453	+	RAMPAGE_only	6	6	43	1.179878	4.041944	chr1	196741215	196741581	LTR|ERVL-MaLR|THE1D	-	chr1	196736907	196832189	MSTRG.2212.12	+	196736907,196737474,196740618,196743451,196830499,196831796	196737006,196737660,196742051,196743628,196830682,196832189	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	102449836	102449845	102449836	+	High_confidence	19	19	46	1.262195	4.786503	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.760870
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	83179075	83179076	83179075	+	High_confidence	7	8	11	0.301829	3.321928	chr15	83178896	83179386	LTR|ERVL|LTR53	+	chr15	83179181	83188505	MSTRG.9105.2	+	83179181,83179777,83180666,83185933	83179251,83179848,83184855,83188505	0.727273
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	32677369	32677370	32677369	+	High_confidence	12	12	13	0.356707	3.084963	chr15	32677294	32677614	LTR?|LTR?|MamRep605	+	chr15	32677559	32696626	SCG5|ENST00000498069.5	+	32677559,32679765,32684559,32691709,32696513	32677744,32679915,32684669,32691763,32696626	0.538462
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	144103557	144103571	144103557	-	High_confidence	3	3	9	0.246951	2.750000	chr8	144103289	144103558	SINE|MIR|MIR	-	chr8	144098636	144103756	MSTRG.24941.2	-	144098636,144099080,144099509,144099702,144099928,144103050,144103552	144098994,144099430,144099618,144099844,144100069,144103225,144103756	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	2667195	2667196	2667195	+	High_confidence	9	9	9	0.246951	3.169925	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	89009234	89009240	89009234	-	High_confidence	3	3	7	0.192073	2.807355	chr4	89009158	89009447	LTR|ERV1|LTR24	+	chr4	88989623	89009894	MSTRG.19629.21	-	88989623,89008950,89009774	88991150,89009078,89009894	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	135635481	135635511	135635510	+	RAMPAGE_only	4	4	9	0.246951	3.169925	chr2	135635478	135635668	SINE|MIR|MIR	-	chr2	135633711	135639114	R3HDM1|ENST00000486532.5	+	135633711,135635889,135636087,135638617,135638738,135638895	135633828,135635998,135636183,135638655,135638789,135639114	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	85778515	85778532	85778522	+	High_confidence	11	12	36	0.987805	3.648511	chr4	85778413	85778594	SINE|MIR|MIR3	+	chr4	85778697	86002670	ARHGAP24|NM_001042669.1	+	85778697,85923647,85942065,85972035,85974887,85977569,85994582,86000478	85778965,85923770,85942273,85972168,85974961,85977691,85995657,86002670	0.972222
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	13246233	13246264	13246263	+	High_confidence	6	10	36	0.987805	4.653496	chr16	13246112	13246474	LTR|ERVL-MaLR|THE1B	+	chr16	13246315	13562918	U91319.1|ENST00000571619.5	+	13246315,13258332,13350179,13474209,13562706	13246390,13258435,13350421,13474341,13562918	0.694444
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	41996313	41996325	41996324	-	RAMPAGE_only	2	4	8	0.219512	2.521641	chr17	41996098	41996284	SINE|MIR|MIRc	-	chr17	41981983	41988873	DNAJC7|ENST00000586335.1	-	41981983,41982254,41983562,41987594,41987818,41988731	41982007,41982401,41983636,41987694,41987910,41988873	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	10508166	10508195	10508182	-	RAMPAGE_only	5	5	14	0.384146	3.546594	chr3	10508153	10508251	LINE|CR1|L3	-	chr3	10324022	10505657	ATP2B2|ENST00000383800.8	-	10324022,10338175,10340241,10340492,10342751,10345383,10346030,10350111,10350397,10358690,10359881,10371808,10375429,10378251,10388276,10400952,10402090,10410617,10449344,10505464	10329125,10338358,10340349,10340704,10342965,10345575,10346137,10350199,10350577,10358925,10360123,10372051,10375644,10378410,10388402,10401078,10402348,10410815,10449862,10505657	0.642857
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	170993051	170993130	170993129	-	RAMPAGE_only	11	11	28	0.768292	3.722907	chr3	170990895	170993502	LINE|L1|L1PB4	+	chr3	170985900	171018623	MSTRG.18845.1	-	170985900,170999064,171005284,171005942,171007147,171009957,171014468,171018530	170998396,171002680,171005472,171006105,171007263,171010082,171014731,171018623	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	93219128	93219180	93219157	-	High_confidence	14	17	57	1.564024	4.185056	chr7	93219071	93219143	LINE|CR1|L3	-	chr7	93188585	93219545	HEPACAM2|ENST00000440868.5	-	93188585,93192253,93195827,93197240,93197484,93208579,93215400,93219100	93189270,93192363,93195901,93197278,93197610,93208876,93215685,93219545	0.824561
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	129493041	129493069	129493057	-	RAMPAGE_only	2	2	10	0.274390	3.121928	chrX	129492703	129493323	LINE|L1|L1ME4a	+	chrX	129446845	129523405	SMARCA1|ENST00000371121.4	-	129446845,129448332,129465519,129465843,129468772,129471203,129480700,129481074,129487017,129488936,129490059,129491940,129493039,129496749,129497844,129499731,129504733,129506079,129507940,129511803,129515686,129515893,129516330,129518360,129523196	129447233,129448443,129465732,129465962,129468905,129471326,129480814,129481185,129487137,129489085,129490192,129492093,129493075,129496871,129498071,129499841,129504802,129506211,129508096,129511983,129515787,129515994,129516497,129518447,129523405	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	20445008	20445009	20445008	+	RAMPAGE_only	6	6	8	0.219512	2.807355	chr6	20444937	20445016	LINE|L2|L2a	+	chr6	20403678	20493714	E2F3|ENST00000535432.2	+	20403678,20479845,20481223,20482761,20486688,20488112,20490167	20403832,20479957,20481425,20482920,20486803,20488248,20493714	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	101998968	101998978	101998977	+	High_confidence	11	11	32	0.878048	4.281728	chr2	101998446	101999045	LTR|ERVL-MaLR|MLT1H1	-	chr2	101998961	102028423	IL1R2|NR_048564.1	+	101998961,102008514,102009561,102015870,102019637,102022186,102024532,102026110,102028225	101999116,102008642,102009826,102016051,102019812,102022249,102024668,102026253,102028423	0.906250
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	125497340	125497374	125497340	-	RAMPAGE_only	2	2	11	0.301829	3.121928	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	0.727273
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	98585924	98585940	98585939	-	High_confidence	3	3	7	0.192073	2.807355	chr3	98585863	98586170	SINE|Alu|AluY	-	chr3	98581407	98585862	CPOX|ENST00000510489.1	-	98581407,98585440	98581511,98585862	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	51403428	51403433	51403428	-	RAMPAGE_only	28	28	54	1.481707	3.993804	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.870370
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	102763498	102763510	102763509	+	RAMPAGE_only	5	9	24	0.658536	4.186704	chr10	102763471	102763555	SINE|MIR|MIRc	-	chr10	102776130	102816264	WBP1L|NM_017787.4	+	102776130,102797992,102809892,102812594	102776417,102798095,102810054,102816264	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	54865648	54865688	54865666	-	RAMPAGE_only	114	121	478	13.115849	5.553024	chr1	54865506	54865684	SINE|MIR|MIRc	-	chr1	54852366	54886836	DHCR24|ENST00000647585.1	-	54852366,54853433,54854036,54865302,54871349,54875092,54875941,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54883773,54886836	0.939331
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	133193708	133193734	133193708	-	RAMPAGE_only	7	7	13	0.356707	3.418296	chr2	133193630	133193747	DNA|hAT-Charlie|MER103C	-	chr2	132671798	133568460	NCKAP5|NM_207481.3	-	132671798,132725626,132728815,132731736,132773815,132790022,132796627,132860491,132868935,132878847,132963719,132994151,133129977,133213715,133303036,133517457,133559049,133568215	132673305,132725759,132728952,132732051,132773894,132790205,132796729,132860611,132868974,132878916,132963869,132994239,133130111,133213779,133303110,133517587,133559117,133568460	0.769231
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	117185994	117186007	117186006	+	High_confidence	6	6	15	0.411585	3.521641	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.933333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	76781587	76781638	76781587	+	RAMPAGE_only	214	216	694	19.042676	7.130114	chr12	76781376	76781761	LTR|ERVL-MaLR|MSTD	+	chr12	76797518	76822490	ZDHHC17|ENST00000549944.1	+	76797518,76805316,76809042,76809712,76813312,76815145,76815856,76822405	76797537,76805439,76809120,76809857,76813449,76815210,76816019,76822490	0.795389
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	182030846	182030862	182030861	+	High_confidence	3	3	9	0.246951	2.750000	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	113392148	113392149	113392148	-	RAMPAGE_only	12	12	13	0.356707	3.418296	chr9	113391831	113392103	LINE|CR1|L3	-	chr9	113389790	113401258	ALAD|ENST00000468504.5	-	113389790,113390404,113390592,113391526,113392118,113393446,113401211	113389828,113390493,113390933,113391623,113392169,113393634,113401258	0.615385
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	111284841	111284875	111284874	-	High_confidence	37	39	66	1.810975	5.421373	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.727273
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	16313946	16313991	16313946	-	RAMPAGE_only	5	6	22	0.603658	3.823068	chr11	16313685	16314209	LINE|L2|L2c	+	chr11	16311244	16341269	SOX6|ENST00000533870.1	-	16311244,16318445,16341011	16318002,16318653,16341269	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	121026057	121026077	121026067	-	RAMPAGE_only	3	3	9	0.246951	3.000000	chr9	121026051	121026184	LINE|L2|L2c	+	chr9	121025695	121034826	C5|ENST00000460578.1	-	121025695,121027159,121030396,121032112,121034802	121025903,121027274,121030487,121032195,121034826	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100935450	100935467	100935458	+	RAMPAGE_only	6	6	15	0.411585	3.664498	chr14	100934354	100935764	LINE|L1|L1M2	-	chr14	100907042	100947076	MSTRG.8059.76	+	100907042,100910232,100913431,100935771,100938879,100940364,100942761,100944808,100947033	100907132,100910304,100913521,100937488,100938956,100940450,100942838,100944872,100947076	0.866667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	42925626	42925633	42925626	-	High_confidence	3	3	8	0.219512	3.000000	chr21	42925506	42925876	LTR|ERV1|MER48	-	chr21	42916802	42925646	ERVH48-1|ENST00000447535.1	-	42916802,42925345	42919291,42925646	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	15829094	15829095	15829094	+	High_confidence	169	174	233	6.393290	6.424284	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15835419	UCA1|ENST00000645221.1	+	15829094,15831254,15834501,15835187	15829338,15831356,15835114,15835419	0.901288
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	101435029	101435045	101435029	-	RAMPAGE_only	2	2	8	0.219512	2.750000	chr15	101434980	101435066	LINE|L2|L2b	-	chr15	101303928	101443663	PCSK6|ENST00000398185.6	-	101303928,101307212,101313375,101318318,101322519,101324849,101326376,101331650,101331851,101366195,101370334,101389463,101393211,101398403,101427891,101429986,101431319,101431989,101443555	101305355,101307325,101313505,101318422,101322607,101325046,101326479,101331689,101332031,101366332,101370523,101389564,101393424,101398576,101427980,101430063,101431463,101432100,101443663	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	87219497	87219504	87219503	+	RAMPAGE_only	6	6	12	0.329268	3.095795	chr11	87219487	87219730	LTR|ERVL-MaLR|MLT1B	-	chr11	87038006	87322350	TMEM135|ENST00000305494.5	+	87038006,87067693,87071522,87091361,87157340,87236637,87295781,87302295,87305935,87309504,87313424,87314470,87318136,87319309,87321200	87038186,87067821,87071615,87091395,87157406,87236684,87295823,87302442,87306005,87309672,87313488,87314547,87318235,87319377,87322350	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	95516119	95516121	95516119	+	High_confidence	2	4	7	0.192073	2.584963	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	3236086	3236115	3236110	+	RAMPAGE_only	3	3	17	0.466463	3.969816	chr18	3235574	3236429	LINE|L2|L2a	-	chr18	3247480	3256227	MYL12A|ENST00000579226.5	+	3247480,3253232,3253888,3255745	3247587,3253428,3254050,3256227	0.705882
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	188884149	188884150	188884149	+	RAMPAGE_only	5	6	8	0.219512	2.750000	chr3	188884141	188884305	SINE|MIR|MIRc	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	43525091	43525092	43525091	+	High_confidence	164	164	215	5.899388	7.055339	chr1	43524527	43525317	LINE|L2|L2c	-	chr1	43525186	43622357	MSTRG.769.1	+	43525186,43528656,43538197,43545030,43553491,43553799,43569589,43578809,43588730,43590971,43591811,43592456,43597747,43603415,43603610,43604902,43605189,43605528,43606239,43606813,43609382,43613617,43617444,43617735,43618629,43619047,43619287,43619679,43620094,43620453,43620837,43621096,43621934	43525257,43528756,43538277,43545166,43553637,43553941,43569778,43578920,43589000,43591553,43591948,43592601,43598913,43603533,43604189,43605000,43605443,43605622,43606458,43606968,43609498,43613715,43617568,43617911,43618749,43619202,43619573,43619858,43620221,43620579,43620992,43621232,43622357	0.697674
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	23543112	23543136	23543135	+	RAMPAGE_only	4	4	9	0.246951	3.169925	chr8	23543065	23543364	SINE|Alu|AluJr	-	chr8	23541469	23572203	SLC25A37|ENST00000523883.5	+	23541469,23543087,23566107,23571334	23541856,23543211,23568378,23572203	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	196060775	196060777	196060775	-	High_confidence	7	11	15	0.411585	3.182006	chr3	196060516	196060826	SINE|Alu|AluY	+	chr3	196055110	196060604	TFRC|ENST00000483983.5	-	196055110,196058283,196058573,196060179	196055301,196058365,196058632,196060604	0.866667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	118212254	118212255	118212254	-	High_confidence	10	10	11	0.301829	3.121928	chr11	118212116	118212308	SINE|MIR|MIRb	-	chr11	118205658	118212470	JAML|ENST00000531536.1	-	118205658,118210486,118212406	118205991,118210712,118212470	0.818182
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	67886471	67886535	67886471	+	High_confidence	60	77	286	7.847558	5.358017	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.895105
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	144138319	144138501	144138382	-	RAMPAGE_only	27	29	184	5.048779	5.891912	chr4	144138134	144138429	LINE|L2|L2a	+	chr4	144111344	144140672	GYPA|ENST00000508337.1	-	144111344,144114688,144116853,144118713,144119685,144120489,144138160,144140598	144111410,144114767,144116939,144118752,144119781,144120588,144138243,144140672	0.592391
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	58215263	58215277	58215263	+	RAMPAGE_only	2	2	7	0.192073	2.584963	chr14	58215306	58216129	LINE|L2|L2c	+	chr14	58213033	58234734	ACTR10|ENST00000557711.5	+	58213033,58215204,58219693,58223621,58223782,58230398,58232065,58234369	58213698,58215284,58219729,58223701,58223856,58230480,58232267,58234734	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	122444187	122444465	122444187	-	RAMPAGE_only	47	50	507	13.911581	4.937251	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	0.996055
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	81170372	81170420	81170402	-	High_confidence	12	13	65	1.783536	4.818649	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.861538
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	12648711	12648727	12648719	-	RAMPAGE_only	2	3	9	0.246951	3.000000	chr3	12648598	12648757	SINE|Alu|AluSz6	+	chr3	12584332	12664125	RAF1|ENST00000423275.5	-	12584332,12584846,12585121,12585680,12587590,12590797,12591707,12599690,12600151,12600387,12604135,12606200,12608765,12609232,12618514,12663812	12584657,12584981,12585253,12585799,12587637,12590974,12591792,12599808,12600279,12600415,12604289,12606299,12608923,12609335,12618747,12664125	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	84085705	84085812	84085705	-	High_confidence	919	1044	2593	71.149366	5.437802	chr5	84085110	84086606	LINE|L1|L1P3	-	chr5	83940599	84085711	MSTRG.20664.2	-	83940599,83963204,84060299,84064699,84066450,84085158	83943568,83963360,84060484,84064844,84066606,84085711	0.992287
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	201458835	201458854	201458835	+	RAMPAGE_only	21	22	42	1.152439	4.500981	chr2	201458879	201459004	SINE|Alu|FLAM_C	+	chr2	201451795	201480846	STRADB|ENST00000392249.6	+	201451795,201454745,201458783,201469952,201472954,201474646,201475618,201477618,201478086,201478356,201479488,201480007	201451938,201454852,201458864,201470052,201473076,201474755,201475742,201477790,201478191,201478601,201479531,201480846	0.976190
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	64226142	64226180	64226158	-	High_confidence	72	77	344	9.439021	7.012710	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.979651
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	38004722	38004736	38004724	+	High_confidence	10	15	23	0.631097	4.070656	chr15	38003252	38004953	LINE|L1|L1M1	-	chr15	38004745	38025018	LINC02345|ENST00000557883.2	+	38004745,38020191,38024680	38004832,38020532,38025018	0.826087
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65440658	65440769	65440697	+	RAMPAGE_only	15	16	143	3.923779	5.187495	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65422799	65445488	MSTRG.4447.4	+	65422799,65423294,65437240,65444287,65445449	65423212,65437184,65444263,65445407,65445488	0.979021
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	35449689	35449735	35449700	+	RAMPAGE_only	17	17	72	1.975609	5.472140	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	54617128	54617152	54617147	+	High_confidence	39	41	127	3.484755	6.311816	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.905512
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	114405770	114405786	114405785	+	RAMPAGE_only	5	5	11	0.301829	2.921928	chr11	114405747	114405830	LINE|CR1|X6B_LINE	-	chr11	114400673	114408123	RBM7|ENST00000545678.1	+	114400673,114405705,114407444	114400767,114405799,114408123	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	115647979	115648001	115647979	+	RAMPAGE_only	2	2	8	0.219512	2.807355	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	77169312	77169334	77169333	-	RAMPAGE_only	4	5	11	0.301829	2.913977	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77088989	77219426	PIGK|ENST00000370812.7	-	77088989,77122274,77154448,77161294,77161593,77163845,77166718,77169259,77206639,77210435,77219309	77092490,77122359,77154621,77161405,77161711,77163942,77166830,77169395,77206731,77210489,77219426	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	23838606	23838646	23838643	-	High_confidence	5	5	31	0.850609	4.681728	chr1	23837780	23838651	LTR|ERV1|LTR1A2	+	chr1	23801886	23838620	HMGCL|ENST00000374487.6	-	23801886,23804399,23808134,23810735,23814189,23816674,23817475,23820509,23826083,23838063	23802564,23804525,23808323,23810799,23814338,23816770,23817583,23820593,23826183,23838620	0.903226
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	46087042	46087066	46087042	-	High_confidence	21	21	51	1.399390	4.749274	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.764706
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrY	4036532	4036546	4036532	+	High_confidence	2	4	14	0.384146	3.182006	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	146222301	146222319	146222301	-	High_confidence	35	35	160	4.390242	5.920309	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146194356	146222371	MSTRG.18679.6	-	146194356,146195123,146196631,146206525,146220814,146222064,146222199	146194455,146195282,146196793,146206761,146220925,146222092,146222371	0.868750
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	135965722	135965749	135965723	+	High_confidence	24	33	81	2.222560	5.267694	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.987654
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	4355592	4355593	4355592	-	High_confidence	177	180	180	4.939023	5.238923	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.877778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100934043	100934044	100934043	+	RAMPAGE_only	4	5	6	0.164634	2.584963	chr14	100934026	100934356	LINE|L1|L1MC1	-	chr14	100906043	100947076	MSTRG.8059.73	+	100906043,100906935,100913431,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100906163,100910304,100931545,100936310,100937488,100938956,100940450,100942838,100944925,100947076	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	80273173	80273844	80273173	-	RAMPAGE_only	32	38	795	21.814017	6.701806	chr10	80273037	80273280	SINE|MIR|MIR	+	chr10	80271819	80275479	MAT1A|ENST00000485270.5	-	80271819,80274519,80275016	80273883,80274653,80275479	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	167966269	167966298	167966295	+	RAMPAGE_only	6	8	18	0.493902	3.683542	chr1	167966281	167966502	DNA|hAT-Charlie|MER30	+	chr1	167968489	167991339	DCAF6|ENST00000491067.1	+	167968489,167969203,167974829,167987494,167991203	167968533,167969259,167975015,167987608,167991339	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	44508804	44508805	44508804	-	RAMPAGE_only	21	21	28	0.768292	4.521641	chr13	44508497	44508853	LINE|L2|L2c	+	chr13	44432142	44474301	TSC22D1|NM_001243798.1	-	44432142,44436043,44474217	44434883,44436095,44474301	0.928571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	16379865	16379866	16379865	-	RAMPAGE_only	5	5	8	0.219512	2.521641	chr11	16379483	16380058	LINE|L1|L1ME4a	+	chr11	15986264	16382398	MSTRG.4009.8	-	15986264,15988996,16014941,16046513,16049754,16055751,16095995,16097608,16111802,16183885,16186782,16234581,16318445,16341011,16381122	15986420,15989230,16015050,16046701,16049938,16055901,16096118,16097688,16111923,16183954,16186955,16234671,16318653,16341252,16382398	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50387647	50387658	50387657	+	RAMPAGE_only	123	126	313	8.588412	7.198139	chr22	50387583	50387737	DNA|hAT-Blackjack|MER63B	-	chr22	50385844	50444390	MSTRG.17541.6	+	50385844,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50436987,50437505,50437842,50438173,50438598,50439700,50439960,50440821,50443865,50444198	50387738,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437068,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50444390	0.632588
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	11321325	11321326	11321325	-	High_confidence	14	14	14	0.384146	3.467720	chr19	11321200	11321519	LTR|ERVL-MaLR|THE1D	-	chr19	11300866	11321323	AC011472.2|ENST00000585801.1	-	11300866,11306678,11321293	11301236,11306824,11321323	0.928571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	66228679	66228693	66228688	-	High_confidence	6	6	27	0.740853	4.328600	chr17	66228520	66228817	SINE|Alu|AluY	+	chr17	66216790	66228637	APOH|ENST00000581797.5	-	66216790,66220553,66223697,66226027,66228019,66228606	66216967,66220742,66223774,66226124,66228196,66228637	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	18544030	18544036	18544035	-	High_confidence	48	56	81	2.222560	5.564063	chr19	18544020	18544075	SINE|MIR|MIR3	-	chr19	18538375	18544058	MSTRG.13249.11	-	18538375,18539370,18539550,18541678,18543908	18538433,18539459,18539720,18541995,18544058	0.975309
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	139551102	139551152	139551102	+	RAMPAGE_only	6	6	19	0.521341	3.905765	chrX	139551151	139551275	DNA|hAT-Ac|OldhAT1	+	chrX	139544680	139563301	F9|ENST00000643157.1	+	139544680,139547304,139548362,139551061,139560740,139561523,139563105	139545148,139547894,139548491,139551264,139560855,139561741,139563301	0.842105
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	212792435	212792473	212792444	-	High_confidence	7	7	36	0.987805	4.739098	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	96638022	96638031	96638022	-	High_confidence	8	8	13	0.356707	3.251629	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.692308
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	184685060	184685084	184685060	+	RAMPAGE_only	3	3	16	0.439024	3.250000	chr4	184684540	184685156	LTR|ERV1|MER90a	-	chr4	184678276	184694592	PRIMPOL|ENST00000508001.1	+	184678276,184685408,184685575,184691498,184691665,184694521	184678394,184685498,184685684,184691581,184691712,184694592	0.937500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	53168697	53168711	53168697	+	RAMPAGE_only	2	2	7	0.192073	2.521641	chr3	53168641	53169049	LINE|L2|L2b	-	chr3	53165128	53184973	PRKCD|ENST00000464818.1	+	53165128,53178403,53179576,53181206,53181443,53181700,53184873	53165215,53178537,53179776,53181267,53181606,53181732,53184973	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	7706678	7706694	7706678	+	RAMPAGE_only	2	2	8	0.219512	2.521641	chr10	7706478	7706833	LINE|L2|L2c	-	chr10	7703399	7732473	MSTRG.2696.6	+	7703399,7705107,7709021,7713180,7717625,7720855,7721648,7723450,7726949,7727702,7729951,7731810,7732337	7703518,7707233,7709191,7713285,7717788,7720963,7721777,7723567,7727118,7727828,7730133,7731996,7732473	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	54616933	54616968	54616967	+	High_confidence	160	172	245	6.722559	6.668159	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54616929	54637556	LILRB1|NM_006669.6	+	54616929,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637556	0.951020
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	192147854	192147869	192147868	+	RAMPAGE_only	4	5	16	0.439024	3.577820	chr1	192147373	192148095	LTR|ERV1|LTR8B	+	chr1	192158456	192185815	RGS18|ENST00000367460.3	+	192158456,192159219,192160377,192181291,192184296	192158756,192159321,192160439,192181458,192185815	0.937500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	35137184	35137206	35137205	+	High_confidence	48	50	96	2.634145	5.180808	chr19	35137130	35137263	SINE|MIR|MIRc	-	chr19	35137173	35143055	MSTRG.13480.1	+	35137173,35140075,35140596,35141131,35141535,35142471,35142719,35142916	35137291,35140140,35140629,35141206,35141572,35142521,35142771,35143055	0.937500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	7706622	7706630	7706629	+	RAMPAGE_only	7	7	19	0.521341	3.350209	chr10	7706478	7706833	LINE|L2|L2c	-	chr10	7703399	7732473	MSTRG.2696.6	+	7703399,7705107,7709021,7713180,7717625,7720855,7721648,7723450,7726949,7727702,7729951,7731810,7732337	7703518,7707233,7709191,7713285,7717788,7720963,7721777,7723567,7727118,7727828,7730133,7731996,7732473	0.947368
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	74608005	74608014	74608005	-	RAMPAGE_only	2	2	7	0.192073	2.584963	chr15	74607843	74608029	LINE|L2|L2c	+	chr15	74598918	74610575	MSTRG.8977.1	-	74598918,74603686,74604284,74608213,74609601,74610302	74602781,74603754,74608015,74609129,74609759,74610575	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	65277835	65277906	65277903	+	RAMPAGE_only	18	21	83	2.277438	5.545001	chr1	65277526	65278085	LTR|ERV1|LTR36	-	chr1	65264753	65415869	DNAJC6|ENST00000395325.7	+	65264753,65364634,65365884,65366047,65379401,65384192,65385711,65386811,65388335,65389255,65389546,65392430,65394897,65398812,65401760,65405869,65408640,65411249,65412923	65264932,65364785,65365934,65366196,65379524,65384326,65385906,65386929,65388415,65389449,65389627,65392865,65395032,65398881,65401880,65406133,65408783,65411426,65415869	0.542169
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	158614260	158614309	158614260	-	RAMPAGE_only	49	49	132	3.621950	5.665461	chr1	158614038	158614213	LINE|RTE-X|L4_B_Mam	-	chr1	158610705	158686698	SPTA1|ENST00000368147.8	-	158610705,158612816,158613720,158614252,158615215,158617536,158618038,158619221,158620169,158622982,158626145,158626838,158627624,158634542,158635912,158636640,158638032,158639581,158639869,158642410,158642813,158643321,158644252,158645187,158645494,158647538,158648508,158649855,158651366,158652466,158653273,158654610,158656563,158657476,158661286,158662701,158666315,158667857,158669407,158669708,158671342,158672058,158674328,158674539,158676140,158677689,158678400,158680582,158681526,158683370,158685107,158686493	158611389,158612961,158613867,158614306,158615403,158617588,158618056,158619334,158620466,158623192,158626222,158627007,158627723,158634675,158636034,158636761,158638241,158639686,158640007,158642542,158642976,158643425,158644396,158645385,158645594,158647720,158648653,158649947,158651468,158652653,158653425,158654748,158656656,158657694,158661409,158662945,158666497,158668062,158669563,158669786,158671453,158672196,158674430,158674675,158676295,158677834,158678534,158680729,158681667,158683496,158685347,158686698	0.719697
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65016272	65016274	65016272	+	RAMPAGE_only	4	8	9	0.246951	3.000000	chr11	65016219	65016460	LINE|L2|L2a	-	chr11	65497687	65506431	MALAT1|ENST00000619449.2	+	65497687,65498681,65498968,65506259	65497865,65498734,65503905,65506431	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	69051209	69051230	69051229	+	High_confidence	4	4	9	0.246951	2.947703	chr4	69050859	69051337	LTR|ERV1|LTR2B	+	chr4	69051362	69108227	UGT2B7|ENST00000502942.5	+	69051362,69089471,69098539,69102806,69107174,69108102	69051602,69089603,69098688,69102938,69107262,69108227	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	26484022	26484055	26484022	+	High_confidence	2	2	13	0.356707	3.418296	chr22	26484072	26484276	SINE|MIR|MIRb	+	chr22	26483883	26491938	SRRD|NM_001013694.2	+	26483883,26486022,26488028,26488389,26490043,26491024,26491462	26484099,26486063,26488288,26488488,26490198,26491070,26491938	0.769231
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	8976918	8976947	8976936	-	RAMPAGE_only	7	10	33	0.905487	4.983788	chr2	8976814	8977048	LINE|L1|L1ME1	+	chr2	8852689	8958590	MSTRG.14227.1	-	8852689,8860612,8862589,8864169,8868445,8873107,8882510,8888017,8908620,8943186,8958496	8858904,8860764,8862722,8864234,8868549,8877213,8882565,8888073,8908716,8943264,8958590	0.818182
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	89009259	89009281	89009280	-	High_confidence	5	5	10	0.274390	2.503258	chr4	89009158	89009447	LTR|ERV1|LTR24	+	chr4	88989623	89009894	MSTRG.19629.21	-	88989623,89008950,89009774	88991150,89009078,89009894	0.700000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	174772749	174772786	174772749	+	RAMPAGE_only	10	13	35	0.960366	4.707715	chr1	174772592	174772875	LINE|L1|L1MB3	-	chr1	174799896	174995308	RABGAP1L|NM_001243765.1	+	174799896,174811831,174957456,174969276,174976077,174978806,174982833,174988640,174989848	174800500,174811960,174957549,174969387,174976182,174978890,174982905,174988838,174995308	0.885714
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	84086745	84086750	84086745	+	RAMPAGE_only	4	4	11	0.301829	2.921928	chr13	84085604	84086932	LTR|ERV1|LTR12C	-	chr13	84140601	84606768	LINC00333|NR_046871.1	+	84140601,84238539,84242062,84562363,84562608,84562791,84606705	84140643,84238600,84242097,84562463,84562676,84563234,84606768	0.545455
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	45524130	45524140	45524130	+	RAMPAGE_only	10	10	24	0.658536	3.886842	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	40353095	40353104	40353103	+	RAMPAGE_only	3	3	8	0.219512	2.500000	chr17	40352960	40353143	LINE|L2|L2c	-	chr17	40351386	40356213	RARA|ENST00000420042.1	+	40351386,40351909,40352330,40354301,40355262,40356008	40351531,40352070,40352507,40354506,40355421,40356213	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	19349963	19349981	19349963	+	RAMPAGE_only	2	2	6	0.164634	2.584963	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19352828	19355445	PDHA1|ENST00000479146.1	+	19352828,19354490,19355348	19353173,19354583,19355445	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	121857338	121857351	121857338	-	High_confidence	4	4	8	0.219512	2.500000	chr12	121857068	121857295	SINE|Alu|AluSx1	-	chr12	121848998	121857583	HPD|ENST00000542159.2	-	121848998,121849686,121854702,121856323,121856582,121857327	121849076,121849938,121854792,121856406,121856603,121857583	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	95191981	95192015	95191981	+	RAMPAGE_only	3	3	9	0.246951	2.725481	chr1	95192014	95192320	SINE|Alu|AluSx1	+	chr1	95117922	95197607	MSTRG.1272.3	+	95117922,95143890,95148701,95150207,95151324,95173815,95191549	95118091,95144056,95148791,95150266,95151419,95173889,95197607	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	41123695	41123714	41123713	+	RAMPAGE_only	5	7	12	0.329268	2.550341	chrX	41123760	41124060	SINE|Alu|AluSz	+	chrX	41085634	41232597	USP9X|ENST00000378308.6	+	41085634,41123470,41128999,41131456,41134724,41136803,41140655,41140965,41141292,41143290,41144521,41148368,41150920,41152947,41162789,41165871,41167481,41168006,41169994,41170469,41171837,41183997,41184396,41186516,41187991,41189308,41196250,41196591,41197363,41198527,41201059,41205302,41210508,41214567,41215898,41217219,41218371,41219101,41223216,41224741,41225048,41229252,41229566,41230500,41232386	41086109,41123724,41129145,41131536,41134837,41137022,41140771,41141217,41141431,41143443,41144626,41148575,41151057,41153081,41162877,41166214,41167577,41168218,41170235,41170619,41171958,41184128,41184675,41186642,41188117,41189475,41196359,41196738,41197510,41198750,41201280,41205493,41210682,41214709,41216652,41217343,41218597,41219231,41223402,41224962,41225137,41229409,41229779,41230596,41232597	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	34373678	34373692	34373678	-	RAMPAGE_only	6	6	10	0.274390	2.725481	chr21	34373071	34373731	LTR|ERV1|MER67B	+	chr21	34370801	34375348	AP000320.1|ENST00000440403.1	-	34370801,34375236	34371160,34375348	0.700000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	97904654	97904660	97904654	-	RAMPAGE_only	3	6	12	0.329268	3.418296	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	138170346	138170410	138170346	-	RAMPAGE_only	4	5	31	0.850609	3.555913	chr5	138170278	138170360	DNA|hAT-Ac|OldhAT1	+	chr5	138156881	138177667	BRD8|ENST00000441656.5	-	138156881,138160068,138160890,138161795,138162053,138163129,138164086,138164319,138164713,138165827,138167933,138168469,138169221,138170344,138170831,138171037,138171360,138172064,138177570	138157267,138160173,138161068,138161864,138162146,138163344,138164133,138164413,138165166,138166108,138168078,138168688,138169349,138170409,138170912,138171160,138171410,138172134,138177667	0.774194
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	186634561	186634562	186634561	+	RAMPAGE_only	9	9	14	0.384146	3.085055	chr3	186634564	186634709	SINE|MIR|MIR3	+	chr3	186635968	186652631	FETUB|ENST00000450521.5	+	186635968,186640459,186641029,186642470,186644750,186646247,186651217,186652262	186636228,186640685,186641140,186642558,186644920,186646349,186651301,186652631	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	91408682	91408712	91408707	+	High_confidence	3	3	12	0.329268	3.277613	chr15	91408656	91408747	SINE|MIR|MIRc	-	chr15	91408707	91605211	CRAT37|ENST00000555947.5	+	91408707,91473220,91604876	91408841,91473316,91605211	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	144533105	144533124	144533105	+	RAMPAGE_only	5	7	19	0.521341	4.142664	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.947368
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	103684697	103684712	103684706	-	RAMPAGE_only	2	2	8	0.219512	2.521641	chrX	103684643	103684884	SINE|MIR|MIR	-	chrX	103675504	103686668	MORF4L2|ENST00000441076.6	-	103675504,103678498,103685170,103686630	103677051,103678651,103685260,103686668	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	142952891	142952906	142952896	-	RAMPAGE_only	4	4	14	0.384146	3.182006	chr3	142952759	142952960	LTR|ERVL|LTR33A	-	chr3	142949163	142962557	PAQR9|ENST00000492509.5	-	142949163,142952790,142962206	142950576,142952850,142962557	0.928571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	196517311	196517318	196517317	-	RAMPAGE_only	4	5	8	0.219512	2.521641	chr1	196515649	196520574	LINE|L1|L1PREC2	+	chr1	196481101	196525796	MSTRG.2206.12	-	196481101,196492261,196517152	196489937,196492341,196525796	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	56367278	56367321	56367320	+	RAMPAGE_only	12	12	75	2.057926	4.510969	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	0.986667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	153819424	153819425	153819424	+	RAMPAGE_only	17	17	17	0.466463	3.057476	chr4	153818041	153821399	LINE|L1|L1PA10	+	chr4	154562955	154571086	FGB|ENST00000302068.8	+	154562955,154565807,154566488,154567592,154568380,154569181,154569513,154570418	154563132,154565999,154566672,154567820,154568494,154569307,154569799,154571086	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	5726355	5726356	5726355	-	High_confidence	7	7	7	0.192073	2.521641	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	212237720	212237736	212237720	-	RAMPAGE_only	3	3	13	0.356707	3.700440	chr1	212237552	212237916	LTR|ERVL-MaLR|MSTC	-	chr1	212225279	212238977	AL451060.1|ENST00000431307.1	-	212225279,212230202,212238906	212225513,212230259,212238977	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	6208681	6208682	6208681	-	High_confidence	141	141	141	3.868901	3.747433	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186614	6208681	MSTRG.149.10	-	6186614,6192929,6197651,6208680	6186710,6193054,6197756,6208681	0.872340
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	37755657	37755658	37755657	+	RAMPAGE_only	4	4	7	0.192073	2.521641	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	141737460	141737471	141737468	+	High_confidence	9	9	20	0.548780	3.932138	chr7	141736645	141737590	DNA|TcMar-Tigger|Tigger3b	+	chr7	141738320	141750461	SSBP1|ENST00000265304.10	+	141738320,141739123,141742168,141743560,141743901,141745495,141750310	141738410,141739190,141742229,141743701,141743989,141745584,141750461	0.950000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	32991432	32991450	32991449	-	High_confidence	2	3	8	0.219512	2.521641	chr19	32991175	32991482	SINE|Alu|AluSc8	+	chr19	32979790	32991417	RHPN2|ENST00000588683.1	-	32979790,32990513,32991333	32980256,32990669,32991417	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	95664742	95664817	95664816	+	High_confidence	12	12	31	0.850609	4.615061	chr14	95664736	95664975	LTR|ERVL-MaLR|MLT1H	-	chr14	95664861	95670414	TCL6|ENST00000486671.1	+	95664861,95668125	95665076,95670414	0.580645
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	88784890	88784891	88784890	+	RAMPAGE_only	4	4	7	0.192073	2.807355	chr2	88784858	88784980	DNA|hAT-Charlie|MER5A1	-	chr2	88782711	88805403	ANKRD36BP2|ENST00000575193.1	+	88782711,88782852,88784597,88784720,88786469,88786590,88788317,88788441,88792420,88797281,88801053,88802712,88804379,88804786,88805378	88782762,88782925,88784626,88784793,88786498,88786663,88788346,88788514,88792494,88797423,88801309,88802865,88804450,88804880,88805403	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	58312242	58312243	58312242	+	RAMPAGE_only	5	5	8	0.219512	2.521641	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	52804270	52804311	52804294	+	RAMPAGE_only	4	4	15	0.411585	3.773557	chr3	52804271	52804340	LINE|CR1|L3b	+	chr3	52794797	52808796	MSTRG.18088.4	+	52794797,52795602,52796480,52796738,52797104,52797816,52798965,52799371,52799752,52800537,52800964,52802333,52802666,52803854,52804648,52805807,52806102,52806292,52806900,52807746,52808109,52808551	52794896,52795623,52796647,52796843,52797267,52797930,52799091,52799488,52799921,52800663,52801146,52802519,52802806,52804588,52804734,52805840,52806138,52806406,52807105,52807916,52808221,52808796	0.533333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	133369930	133370017	133370016	-	RAMPAGE_only	11	14	40	1.097561	4.682587	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.975000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	109479044	109479110	109479075	-	RAMPAGE_only	11	14	51	1.399390	4.941468	chr9	109479015	109479587	LINE|L1|L1MB4	-	chr9	109375699	109498306	PTPN3|ENST00000374541.3	-	109375699,109381651,109382301,109383422,109389232,109391137,109391470,109404447,109406461,109408320,109409998,109410228,109420423,109422717,109426949,109428620,109433072,109436882,109438113,109445239,109448810,109454495,109457172,109457291,109463296,109498218	109379633,109381787,109382447,109383551,109389379,109391199,109391561,109404608,109406618,109408377,109410076,109410415,109420600,109422852,109427122,109428684,109433161,109436970,109438234,109445292,109448855,109454574,109457215,109457399,109463451,109498306	0.607843
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	112905444	112905445	112905444	+	RAMPAGE_only	7	7	7	0.192073	2.807355	chr13	112905088	112905575	LTR|ERV1|LTR10B1	-	chr13	113584687	113641473	TFDP1|NR_026580.1	+	113584687,113585773,113610995,113623179,113633119,113633889,113634533,113635976,113636533,113637817,113640119	113584730,113585849,113611062,113623286,113633285,113634033,113634602,113636128,113636700,113637884,113641473	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	52780549	52780572	52780571	+	High_confidence	3	3	9	0.246951	2.725481	chr3	52780606	52780679	SINE|MIR|MIRc	+	chr3	52780116	52783067	ITIH1|ENST00000494603.1	+	52780116,52781939,52782150,52782956	52780382,52782065,52782267,52783067	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	7642315	7642322	7642315	+	High_confidence	2	3	8	0.219512	2.807355	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	9965312	9965321	9965320	+	RAMPAGE_only	4	6	9	0.246951	3.169925	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	52779817	52779849	52779817	+	High_confidence	3	3	12	0.329268	2.855389	chr3	52779785	52779928	SINE|MIR|MIRc	+	chr3	52779920	52783003	ITIH1|ENST00000487686.5	+	52779920,52780268,52781939,52782150,52782956	52780093,52780382,52782065,52782267,52783003	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	128859708	128859736	128859708	-	High_confidence	4	4	14	0.384146	3.521641	chr3	128857766	128859679	LTR|ERV1|HERV3-int	-	chr3	128854564	128860526	MSTRG.18513.1	-	128854564,128859454	128855914,128860526	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	37298760	37298761	37298760	+	RAMPAGE_only	8	8	8	0.219512	3.000000	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	11193340	11193367	11193365	+	High_confidence	8	14	46	1.262195	3.625192	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.826087
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	109250832	109250864	109250863	+	RAMPAGE_only	6	7	14	0.384146	3.467720	chr6	109245218	109251251	LINE|L1|L1PA2	-	chr6	109236613	109270514	LOC100996634|NM_001277339.1	+	109236613,109239327,109242178,109254447,109255370,109257545,109261888,109264800,109267807,109270038	109236780,109239520,109242306,109254648,109255492,109257774,109262091,109264956,109267901,109270514	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	47067498	47067534	47067498	-	High_confidence	306	343	1257	34.490842	6.105233	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.944312
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	632415	632448	632447	+	RAMPAGE_only	7	8	25	0.685975	3.973661	chr12	632410	632514	LINE|L2|L2	+	chr12	630890	645878	LOC100049716|NR_122124.1	+	630890,632213,632508,640843,643958	630985,632247,632616,641024,645878	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	38346075	38346076	38346075	+	High_confidence	41	42	51	1.399390	4.758563	chr20	38346041	38346224	SINE|MIR|MIRb	+	chr20	38346355	38377023	LBP|ENST00000217407.2	+	38346355,38349547,38350810,38354283,38355345,38360703,38363974,38364575,38366768,38368994,38370737,38371279,38373071,38373936,38376624	38346640,38349662,38350939,38354439,38355409,38360767,38364066,38364752,38366828,38369162,38370805,38371322,38373135,38374013,38377023	0.862745
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	84085301	84085353	84085301	-	High_confidence	17	18	46	1.262195	3.439308	chr5	84085110	84086606	LINE|L1|L1P3	-	chr5	83940599	84085711	MSTRG.20664.2	-	83940599,83963204,84060299,84064699,84066450,84085158	83943568,83963360,84060484,84064844,84066606,84085711	0.956522
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	69268805	69268817	69268808	-	High_confidence	18	18	62	1.701219	5.072907	chr17	69268468	69268963	LTR|ERVL|LTR105_Mam	+	chr17	69248259	69268874	ABCA5|ENST00000586811.1	-	69248259,69249904,69250471,69251746,69253572,69253793,69254314,69255542,69255732,69256156,69259705,69260337,69261124,69261634,69264734,69267942,69268719	69248317,69249984,69250621,69251866,69253667,69253869,69254490,69255634,69255850,69256283,69259797,69260412,69261259,69261748,69264905,69268056,69268874	0.935484
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	111875	111884	111875	-	High_confidence	8	11	17	0.466463	3.969816	chr12	110820	111833	LTR|ERV1|HERVP71A-int	-	chr12	106523	111850	AC026369.3|ENST00000540226.1	-	106523,111618	106877,111850	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	152412488	152412529	152412488	-	High_confidence	8	8	27	0.740853	4.430632	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65431655	65431713	65431680	+	RAMPAGE_only	5	6	34	0.932927	4.680758	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422799	65445488	MSTRG.4447.4	+	65422799,65423294,65437240,65444287,65445449	65423212,65437184,65444263,65445407,65445488	0.970588
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	4143196	4143215	4143199	+	High_confidence	111	113	274	7.518290	5.951737	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.959854
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	32222930	32222933	32222930	+	High_confidence	7	7	14	0.384146	3.334679	chr1	32222814	32223048	SINE|Alu|AluJo	+	chr1	32222439	32229208	EIF3I|ENST00000483517.5	+	32222439,32226170,32226402,32228498,32228726,32229134	32222630,32226320,32226530,32228609,32228816,32229208	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	157273724	157273749	157273724	+	RAMPAGE_only	10	10	42	1.152439	4.975418	chr1	157273297	157273792	LTR|ERV1|LTR21A	-	chr1	157280715	157283068	AL138900.3|ENST00000607010.1	+	157280715,157282577	157280853,157283068	0.642857
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	89272838	89272887	89272854	-	High_confidence	44	45	432	11.853654	6.237278	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.958333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	132718385	132718386	132718385	-	RAMPAGE_only	25	25	30	0.823170	4.556088	chr6	132717891	132718788	LTR|ERVL|MER21A	-	chr6	132680857	132714055	VNN1|NM_004666.2	-	132680857,132684334,132692222,132693023,132693989,132711708,132713825	132683322,132684505,132692584,132693315,132694182,132711839,132714055	0.933333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	643625	643636	643635	-	High_confidence	114	115	432	11.853654	5.686766	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.953704
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	169812903	169812904	169812903	-	High_confidence	13	13	16	0.439024	3.006239	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.937500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	55255762	55255769	55255768	-	High_confidence	6	6	13	0.356707	3.418296	chr19	55255671	55256025	LINE|L2|L2b	+	chr19	55245343	55255769	PPP6R1|ENST00000592242.1	-	55245343,55245491,55246876,55255674	55245402,55245678,55247109,55255769	0.923077
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	9407506	9407507	9407506	-	RAMPAGE_only	9	9	12	0.329268	2.584963	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9398354	9414851	AC141557.1|ENST00000540982.1	-	9398354,9400235,9402426,9414802	9398484,9400326,9402556,9414851	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	39021125	39021161	39021155	+	High_confidence	22	22	126	3.457316	5.916728	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.936508
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	46350838	46350850	46350849	+	RAMPAGE_only	4	4	8	0.219512	2.807355	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	74000443	74000448	74000446	+	RAMPAGE_only	3	4	8	0.219512	2.807355	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	136625270	136625271	136625270	-	RAMPAGE_only	35	36	38	1.042683	4.756619	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.868421
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	17969267	17969312	17969296	+	High_confidence	4	4	10	0.274390	2.947703	chr8	17969120	17969340	SINE|MIR|MIRb	+	chr8	17969422	17972642	PCM1|ENST00000523540.1	+	17969422,17972328	17969748,17972642	0.700000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	26944406	26944417	26944411	+	High_confidence	122	122	322	8.835363	4.103641	chr1	26944211	26944496	SINE|Alu|AluJb	-	chr1	26944389	26946862	MSTRG.481.4	+	26944389,26945389,26945567,26946129	26944475,26945473,26945686,26946862	0.984472
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	189583378	189583406	189583405	-	RAMPAGE_only	17	17	58	1.591463	5.315175	chr2	189583287	189583363	LINE|CR1|L3	-	chr2	189560578	189582022	MSTRG.15530.1	-	189560578,189563583,189565353,189571714,189572845,189575160,189579812,189580417,189581707	189562191,189564225,189565599,189571841,189572961,189575320,189579880,189580562,189582022	0.534483
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	167472982	167472983	167472982	-	High_confidence	9	9	9	0.246951	2.947703	chr6	167472650	167472987	LTR|ERVL-MaLR|THE1B	-	chr6	167459257	167472790	LOC105378127|NR_134591.1	-	167459257,167462508,167463443,167472733	167459519,167462672,167463591,167472790	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65438452	65438782	65438659	+	RAMPAGE_only	30	31	291	7.984753	5.838362	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65422799	65445488	MSTRG.4447.4	+	65422799,65423294,65437240,65444287,65445449	65423212,65437184,65444263,65445407,65445488	0.993127
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	114098016	114098039	114098038	-	High_confidence	5	5	10	0.274390	2.646439	chr9	114097946	114098039	SINE|MIR|MIR3	+	chr9	114097399	114097936	KIF12|ENST00000491059.1	-	114097399,114097606	114097436,114097936	0.700000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	10749095	10749106	10749103	+	High_confidence	4	4	13	0.356707	3.392747	chr6	10748977	10749138	SINE|MIR|MIR	-	chr6	10749963	10756697	TMEM14B|ENST00000486421.1	+	10749963,10751132,10755141,10756466	10750044,10751234,10755232,10756697	0.538462
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	19487898	19487901	19487898	-	High_confidence	326	380	769	21.100602	6.992281	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.715215
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	109053947	109053957	109053951	-	High_confidence	12	12	38	1.042683	4.366091	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.921053
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	114624984	114625007	114624984	-	High_confidence	2	3	13	0.356707	3.238901	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.538462
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	6183294	6183318	6183317	+	RAMPAGE_only	3	3	8	0.219512	2.521641	chr12	6183215	6183362	LINE|CR1|L3	+	chr12	6199714	6238271	CD9|ENST00000382518.6	+	6199714,6200421,6225425,6232631,6233411,6235228,6235475,6236191,6237762	6200072,6200565,6225534,6232729,6233486,6235327,6235565,6236275,6238271	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	48546103	48546140	48546139	-	High_confidence	4	5	16	0.439024	3.773557	chr4	48546053	48546089	LINE|CR1|X7C_LINE	-	chr4	48521093	48546759	FRYL|ENST00000513401.5	-	48521093,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066	48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546759	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	42825888	42825905	42825895	-	High_confidence	67	98	250	6.859754	6.529842	chr5	42825250	42825999	LTR|ERV1|LTR1F	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.964000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	117454948	117454953	117454949	+	High_confidence	12	18	27	0.740853	4.578781	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	91179462	91179526	91179462	-	High_confidence	75	82	412	11.304874	7.055655	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.907767
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	134485443	134485496	134485443	-	High_confidence	32	34	177	4.856706	6.359892	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.915254
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	167867290	167867312	167867300	+	RAMPAGE_only	16	16	37	1.015244	4.593400	chr1	167866780	167869426	LTR|ERV1|Harlequin-int	+	chr1	167935782	167987547	DCAF6|ENST00000450548.5	+	167935782,167951799,167966628,167974829,167987494	167936112,167951861,167966721,167975015,167987547	0.567568
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	37893871	37893872	37893871	-	RAMPAGE_only	16	16	16	0.439024	3.250000	chr1	37893462	37893926	LINE|L2|L2c	+	chr1	37885508	37888344	INPP5B|ENST00000467066.1	-	37885508,37886887,37887350,37888242	37885825,37887004,37887465,37888344	0.937500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	46182451	46182456	46182455	-	High_confidence	16	16	31	0.850609	4.651084	chr13	46182370	46182414	SINE|Alu|AluJo	-	chr13	46125922	46182324	LCP1|NM_002298.4	-	46125922,46130813,46134126,46142291,46143289,46144441,46146907,46148351,46150935,46152779,46154804,46156437,46158521,46158825,46159598,46182110	46127723,46130938,46134250,46142425,46143404,46144520,46147103,46148447,46151078,46152945,46154886,46156570,46158651,46158989,46159686,46182324	0.870968
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	151158498	151158518	151158498	-	High_confidence	3	3	12	0.329268	3.584963	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	200411581	200411582	200411581	+	High_confidence	10	10	10	0.274390	3.321928	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411693	200478360	AC104461.1|ENST00000647823.1	+	200411693,200444617,200472040,200473908,200477967	200411962,200444945,200472119,200474186,200478360	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	28335904	28335916	28335904	-	High_confidence	3	3	10	0.274390	3.321928	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	160101168	160101208	160101207	+	RAMPAGE_only	4	5	15	0.411585	3.664498	chr6	160101091	160101276	LINE|L1|L1MEd	+	chr6	160061630	160106507	IGF2R|ENST00000650503.1	+	160061630,160061752,160062531,160063414,160064400,160064803,160068248,160069867,160071909,160072764,160073212,160073756,160075846,160078200,160079579,160080128,160083949,160084994,160088032,160089915,160096438,160102518,160103745,160104673	160061646,160061928,160062619,160063630,160064531,160064901,160068385,160070058,160072036,160072884,160073469,160073975,160075996,160078362,160079787,160080275,160084184,160085131,160089253,160090103,160096625,160102671,160103815,160106507	0.933333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	104254250	104254275	104254250	+	High_confidence	3	3	9	0.246951	2.750000	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254193	104267464	GSTO1|NM_001191003.1	+	104254193,104255162,104259575,104262978,104266083,104267251	104254499,104255271,104259798,104263077,104266190,104267464	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	63712268	63712277	63712268	+	RAMPAGE_only	2	3	9	0.246951	2.500000	chr15	63712113	63712621	LINE|L2|L2	-	chr15	63675145	63713758	AC073167.1|ENST00000559303.2	+	63675145,63677884,63678222,63713465	63675175,63678044,63678319,63713758	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	44990430	44990431	44990430	+	High_confidence	14	14	20	0.548780	4.142664	chr10	44990231	44990788	LTR|ERV1|MER34A1	-	chr10	44990537	44991970	RASSF4|ENST00000493490.1	+	44990537,44990947,44991904	44990828,44991069,44991970	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	22082523	22082550	22082526	-	RAMPAGE_only	55	58	194	5.323169	5.965115	chr12	22082443	22082846	LTR|ERVL|LTR16A	+	chr12	22063772	22070613	ST8SIA1|ENST00000536535.1	-	22063772,22066344,22068862,22070571	22063927,22066435,22069020,22070613	0.768041
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	149494822	149494832	149494822	-	RAMPAGE_only	3	3	7	0.192073	2.584963	chr7	149494691	149494871	LINE|L2|L2c	+	chr7	149472797	149497700	MSTRG.23860.4	-	149472797,149476921,149477563,149492858,149493988,149494203,149497512	149475483,149477047,149477755,149492972,149494115,149494503,149497700	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	144533141	144533175	144533141	+	RAMPAGE_only	2	2	24	0.658536	4.186704	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	141737957	141738045	141738041	-	High_confidence	12	13	91	2.496950	5.806977	chr7	141737808	141738038	SINE|Alu|AluJb	-	chr7	141723901	141737775	WEE2-AS1|ENST00000486906.1	-	141723901,141727991,141737382	141724024,141728145,141737775	0.769231
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	18491537	18491553	18491537	+	RAMPAGE_only	3	3	7	0.192073	2.807355	chr12	18491467	18491583	DNA|hAT-Ac|OldhAT1	-	chr12	18282043	18648095	PIK3C2G|ENST00000546003.5	+	18282043,18286853,18290854,18293900,18313961,18320961,18325034,18338425,18343326,18346640,18362763,18371179,18381765,18391121,18399658,18420940,18423944,18488448,18491450,18496061,18497618,18503280,18505291,18538155,18546322,18562702,18563376,18566948,18594493,18609534,18640428,18647875	18282759,18286929,18291012,18294015,18314064,18321032,18325098,18338548,18343360,18346836,18362886,18371311,18381880,18391252,18399847,18421034,18424039,18488629,18491558,18496154,18497748,18503417,18505461,18538312,18546432,18562892,18563498,18567057,18594569,18609629,18640554,18648095	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	36805379	36805411	36805379	-	RAMPAGE_only	2	3	9	0.246951	2.500000	chr18	36805277	36805349	LINE|L2|L2b	-	chr18	36796071	36828963	TPGS2|ENST00000593035.5	-	36796071,36798448,36800197,36805373,36807846,36818893,36828682	36797050,36798609,36800311,36805397,36807934,36818973,36828963	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	20775700	20775863	20775723	-	RAMPAGE_only	16	17	114	3.128048	4.963789	chr1	20775005	20775936	DNA|TcMar-Tigger|Tigger3b	+	chr1	20775449	20780541	HP1BP3|ENST00000487117.1	-	20775449,20779811,20780344	20776750,20779911,20780541	0.728070
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	62376632	62376642	62376632	+	High_confidence	6	6	14	0.384146	3.026987	chr9	62376600	62376639	SINE|MIR|MIRb	+	chr9	62376516	62434385	FGF7P6|ENST00000452826.2	+	62376516,62432875	62376813,62434385	0.928571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	101217578	101217595	101217578	-	High_confidence	11	14	31	0.850609	4.418157	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.935484
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	20805896	20805907	20805906	-	High_confidence	3	3	8	0.219512	3.000000	chr16	20805458	20806036	LTR|ERV1|LTR10C	+	chr16	20803424	20806105	ERI2|ENST00000562277.5	-	20803424,20803602,20805714	20803511,20803670,20806105	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	15262935	15262944	15262935	-	RAMPAGE_only	23	24	41	1.125000	4.967308	chr3	15262675	15262961	SINE|Alu|AluSx	+	chr3	15258864	15276045	SH3BP5|ENST00000366391.6	-	15258864,15259760,15262158,15269712,15275667	15259050,15259803,15262289,15269877,15276045	0.585366
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	36000957	36000958	36000957	+	RAMPAGE_only	6	6	9	0.246951	3.169925	chr17	36000486	36000986	LTR|ERVL|MER74B	+	chr17	36009561	36011618	AC244100.3|ENST00000617328.1	+	36009561,36010019	36009683,36011618	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	71379926	71379927	71379926	+	High_confidence	5	5	7	0.192073	2.584963	chr2	71379856	71379996	DNA|TcMar-Tigger|MER44D	+	chr2	71380175	71398757	ZNF638|ENST00000491843.2	+	71380175,71380512,71380837,71396140,71398700	71380280,71380565,71380903,71396191,71398757	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	55267598	55267629	55267628	-	High_confidence	3	3	10	0.274390	3.169925	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	24541461	24541518	24541505	-	RAMPAGE_only	6	6	22	0.603658	3.788755	chr22	24541379	24541645	SINE|Alu|AluSx	+	chr22	24540441	24555171	GUCD1|ENST00000398245.8	-	24540441,24542933,24543841,24546913,24547907,24548916,24554948	24541062,24543097,24544083,24547005,24548073,24549001,24555171	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	65218881	65218897	65218896	+	RAMPAGE_only	3	3	8	0.219512	2.521641	chr1	65218928	65219138	LINE|L1|L1M5	+	chr1	65165931	65226429	AK4|ENST00000479060.1	+	65165931,65190709,65218753,65224751,65226062	65166019,65190829,65218926,65224870,65226429	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	72100421	72100422	72100421	-	High_confidence	5	5	8	0.219512	2.750000	chr3	72100285	72100568	DNA|hAT-Charlie|MER102b	-	chr3	72035299	72100427	LINC00877|ENST00000468646.6	-	72035299,72055860,72059686,72060509,72060802,72099903,72100168	72036520,72055962,72060109,72060611,72061094,72100010,72100427	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	95117535	95117572	95117571	+	High_confidence	8	9	30	0.823170	4.319903	chr1	95117576	95117935	LINE|L1|L1M4b	+	chr1	95117438	95173878	TMEM56|ENST00000456991.5	+	95117438,95121054,95143890,95148701,95150207,95151324,95173815	95117827,95121184,95144056,95148791,95150266,95151419,95173878	0.766667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	5726116	5726325	5726324	-	High_confidence	577	603	1082	29.689014	6.266512	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.509242
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	96451452	96451490	96451489	+	RAMPAGE_only	7	7	16	0.439024	3.323231	chr14	96451524	96451593	LINE|RTE-BovB|MamRTE1	+	chr14	96392110	96489427	AK7|ENST00000267584.8	+	96392110,96398074,96404756,96408846,96420821,96437834,96442729,96446516,96449801,96451420,96456346,96458082,96471477,96472686,96478464,96482998,96486897,96488304	96392259,96398263,96404865,96408941,96420932,96437915,96442818,96446607,96449879,96451570,96456475,96458212,96471606,96472755,96478662,96483219,96487056,96489427	0.937500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	108224049	108224075	108224074	+	High_confidence	7	7	13	0.356707	3.392747	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.692308
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	12648663	12648681	12648663	-	RAMPAGE_only	7	8	13	0.356707	3.418296	chr3	12648598	12648757	SINE|Alu|AluSz6	+	chr3	12584332	12664125	RAF1|ENST00000423275.5	-	12584332,12584846,12585121,12585680,12587590,12590797,12591707,12599690,12600151,12600387,12604135,12606200,12608765,12609232,12618514,12663812	12584657,12584981,12585253,12585799,12587637,12590974,12591792,12599808,12600279,12600415,12604289,12606299,12608923,12609335,12618747,12664125	0.538462
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	53811934	53811942	53811941	-	High_confidence	6	6	16	0.439024	3.875000	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.812500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	102235451	102235459	102235458	-	High_confidence	5	5	11	0.301829	3.121928	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	141332616	141332617	141332616	-	High_confidence	49	49	55	1.509146	4.236019	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	157058373	157058374	157058373	-	High_confidence	9	9	10	0.274390	2.725481	chr5	157058281	157058594	SINE|Alu|AluYm1	+	chr5	157052364	157058396	HAVCR1|ENST00000518745.1	-	157052364,157055200,157057897,157058303	157052654,157055533,157057955,157058396	0.700000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	182030773	182030784	182030773	+	High_confidence	24	24	57	1.564024	4.497193	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.859649
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	81371567	81371571	81371567	-	RAMPAGE_only	17	17	33	0.905487	4.413716	chr5	81371244	81371552	SINE|Alu|AluJr	-	chr5	81330004	81394143	ACOT12|ENST00000307624.7	-	81330004,81330813,81332476,81335767,81342671,81343817,81344159,81344890,81345884,81347773,81359902,81363787,81371749,81385756,81393987	81330543,81330940,81332605,81335901,81342755,81343881,81344215,81345041,81346004,81347930,81360038,81363889,81371810,81385826,81394143	0.636364
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	73837439	73837485	73837450	-	RAMPAGE_only	16	22	55	1.509146	3.878957	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.945455
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	17895504	17895513	17895504	-	High_confidence	17511	17776	52297	1434.978164	7.883585	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.890606
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	48492734	48492759	48492734	-	High_confidence	4	4	10	0.274390	3.121928	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	100632815	100632838	100632837	-	High_confidence	3	3	6	0.164634	2.584963	chr7	100632541	100632869	SINE|Alu|AluJr	-	chr7	100620419	100633104	TFR2|ENST00000490084.5	-	100620419,100626762,100627263,100627576,100627743,100627906,100628072,100628223,100629252,100630888,100631498,100631805,100632081,100633000	100621126,100626903,100627491,100627661,100627820,100627974,100628136,100628306,100629372,100631052,100631596,100631945,100632198,100633104	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	155891063	155891081	155891064	+	RAMPAGE_only	5	9	26	0.713414	4.243856	chr3	155890301	155891255	DNA|TcMar-Tigger|Tigger6a	-	chr3	155895412	155910810	GMPS|ENST00000476145.1	+	155895412,155897926,155903862,155906159,155910691	155895546,155898041,155903960,155906263,155910810	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	74238683	74238705	74238683	+	High_confidence	9	10	21	0.576219	3.884184	chr11	74238710	74238876	SINE|MIR|MIRb	+	chr11	74238892	74253563	PPME1|ENST00000538501.5	+	74238892,74246075,74247078,74250953,74251647,74253491	74239256,74246205,74247123,74251018,74251715,74253563	0.952381
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	47369479	47369492	47369479	+	High_confidence	158	166	938	25.737796	7.427099	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369494	47387034	MSTRG.14547.5	+	47369494,47373462,47373807,47375233,47377013,47378952,47379768,47385165,47386571	47369749,47373570,47374048,47375299,47377077,47379054,47379969,47385210,47387034	0.961620
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	20658589	20658608	20658607	+	High_confidence	3	3	9	0.246951	2.750000	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	37020353	37020366	37020353	-	High_confidence	2	2	7	0.192073	2.584963	chr22	37020208	37020303	SINE|MIR|MIRb	-	chr22	37010858	37020183	TST|NM_001270483.1	-	37010858,37018137,37020161	37011325,37018753,37020183	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	19126400	19126424	19126423	-	RAMPAGE_only	2	2	6	0.164634	2.584963	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19125505	19127475	PLIN2|ENST00000475923.1	-	19125505,19127418	19126448,19127475	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	57793732	57793738	57793732	+	RAMPAGE_only	3	3	7	0.192073	2.807355	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57781602	57796584	CTNND1|ENST00000530068.5	+	57781602,57791491,57794009,57795576,57796456	57781646,57791673,57794081,57795729,57796584	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	107580245	107580267	107580245	+	High_confidence	1061	1068	4546	124.737762	7.260980	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.913110
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	62753439	62753452	62753449	+	RAMPAGE_only	7	7	15	0.411585	3.773557	chr15	62753239	62753497	LTR|ERVL-MaLR|MLT1L	-	chr15	62758589	62784838	TLN2|ENST00000472902.1	+	62758589,62761680,62762271,62763562,62766320,62770963,62776763,62781139,62783770	62758659,62761821,62762453,62763695,62766422,62771134,62776910,62781241,62784838	0.600000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	196060917	196060958	196060957	-	High_confidence	3	3	15	0.411585	3.640224	chr3	196060826	196060926	LINE|L1|L1MC1	-	chr3	196055110	196060604	TFRC|ENST00000483983.5	-	196055110,196058283,196058573,196060179	196055301,196058365,196058632,196060604	0.733333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	114823198	114823199	114823198	-	RAMPAGE_only	10	10	10	0.274390	2.646439	chr9	114823066	114823278	DNA|hAT-Charlie|MER20	-	chr9	114060126	114078472	AMBP|ENST00000265132.7	-	114060126,114060924,114061423,114062676,114069698,114072924,114074035,114074959,114076597,114078092	114060270,114061098,114061591,114062758,114069745,114073026,114074152,114075036,114076740,114078472	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	26962069	26962084	26962072	+	RAMPAGE_only	3	4	10	0.274390	2.921928	chr9	26962113	26962223	SINE|Alu|AluJr	+	chr9	26956478	27036800	IFT74|ENST00000429045.6	+	26956478,26961948,26978127,26980570,26984256,26984498,26988668,26990133,27009019,27011905,27016906,27018646,27029024,27036449	26956516,26962087,26978263,26980619,26984355,26984559,26988728,26990195,27009158,27011968,27017050,27018687,27029104,27036800	0.700000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	188003425	188003465	188003428	-	High_confidence	21	23	44	1.207317	4.868523	chr3	188003354	188003555	DNA|hAT-Blackjack|MER63A	+	chr3	188001699	188003406	AC092941.2|ENST00000444379.1	-	188001699,188003278	188002579,188003406	0.545455
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	39627120	39627121	39627120	-	High_confidence	54	57	67	1.838414	4.528869	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.925373
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	100291604	100291631	100291610	-	RAMPAGE_only	10	10	23	0.631097	4.262692	chr10	100291547	100292234	LINE|L2|L2c	+	chr10	100288395	100329940	PKD2L1|ENST00000528248.1	-	100288395,100288971,100290014,100290400,100291300,100292947,100293280,100294534,100294941,100296121,100296979,100297381,100298561,100299590,100329210,100329868	100288478,100289056,100290138,100290519,100291427,100293069,100293379,100294655,100295123,100296292,100297208,100297606,100298815,100299718,100329346,100329940	0.956522
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	48805140	48805165	48805159	+	High_confidence	17	18	45	1.234756	4.880180	chr4	48805071	48805471	LTR|ERVL-MaLR|MLT1F	+	chr4	48805211	48850036	OCIAD1|ENST00000504654.5	+	48805211,48830576,48832619,48833400,48842635,48848398,48849946	48805330,48830673,48832682,48833481,48842689,48848446,48850036	0.755556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	39674493	39674549	39674528	-	High_confidence	113	127	596	16.353653	6.631598	chr6	39674392	39674532	LINE|L2|L2b	+	chr6	39336153	39674578	MSTRG.21921.4	-	39336153,39343708,39345699,39346475,39357276,39360394,39362433,39385621,39419947,39431052,39540002,39544554,39545582,39578055,39584897,39586260,39596053,39613188,39634848,39639609,39674404	39336548,39343815,39345789,39346526,39357374,39360530,39362518,39385672,39420003,39431161,39540221,39544693,39545688,39578159,39584984,39586404,39596260,39613318,39634958,39639757,39674578	0.907718
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	44914321	44914322	44914321	+	High_confidence	284	289	331	9.082314	5.658276	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.858006
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	81001414	81001451	81001443	-	RAMPAGE_only	15	15	59	1.618902	4.648255	chr16	81001365	81001640	LINE|L1|L1MB3	+	chr16	80975800	80998949	CMC2|ENST00000563779.5	-	80975800,80981805,80997313	80976179,80981877,80998949	0.881356
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	77175302	77175309	77175302	+	High_confidence	11	11	21	0.576219	3.744239	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.952381
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31447595	31447628	31447627	-	RAMPAGE_only	3	3	10	0.274390	3.121928	chr12	31447606	31447734	LINE|L1|X9_LINE	+	chr12	31424568	31426751	DENND5B|ENST00000537061.1	-	31424568,31426292	31424687,31426751	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	42287460	42287461	42287460	+	RAMPAGE_only	9	9	9	0.246951	2.947703	chr15	42287351	42287469	DNA|hAT-Blackjack|MER94	+	chr15	42276345	42327495	GANC|ENST00000567421.1	+	42276345,42278481,42287690,42292734,42297610,42306545,42308221,42310282,42310692,42321784,42326297,42327362	42276410,42278590,42287818,42292917,42297656,42306612,42308318,42310463,42310846,42322020,42326424,42327495	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	72111412	72111456	72111412	-	High_confidence	4	5	14	0.384146	3.521641	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	38498987	38499010	38498987	+	High_confidence	4	4	13	0.356707	3.546594	chr11	38498802	38499310	LTR|ERVL|MLT2A2	+	chr11	38498994	38500186	AC021713.1|ENST00000526554.1	+	38498994,38499916	38499234,38500186	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	48199381	48199390	48199381	-	RAMPAGE_only	2	2	6	0.164634	2.584963	chr17	48199174	48199607	LINE|L2|L2c	+	chr17	48180091	48185179	SKAP1|ENST00000579336.1	-	48180091,48182393,48184722	48180248,48182457,48185179	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	101308291	101308325	101308316	+	High_confidence	13	15	55	1.509146	5.203643	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.927273
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	44614727	44614751	44614747	+	High_confidence	11	11	39	1.070122	5.028992	chr11	44614467	44615101	LINE|L2|L2a	-	chr11	44614248	44619275	MSTRG.4185.14	+	44614248,44615271,44618161,44618639,44619048	44614777,44615373,44618365,44618723,44619275	0.897436
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	56737841	56737863	56737850	-	High_confidence	3	3	13	0.356707	3.251629	chr15	56737845	56738254	LTR|ERVL-MaLR|MLT1J2	+	chr15	56652489	56737917	MSTRG.8697.9	-	56652489,56658423,56666394,56666799,56668822,56676669,56677573,56678663,56682253,56689040,56689299,56693097,56700932,56701172,56704120,56707081,56707262,56737822	56654503,56658486,56666535,56666986,56668957,56676816,56677674,56678821,56682477,56689150,56689470,56693215,56701072,56701238,56704267,56707143,56707306,56737917	0.692308
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	53576948	53576966	53576963	-	RAMPAGE_only	2	2	9	0.246951	2.750000	chrX	53576946	53576998	LTR|ERV1|LTR43-int	+	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	132991146	132991157	132991155	+	RAMPAGE_only	3	6	14	0.384146	2.931209	chr9	132991182	132991301	SINE|MIR|MIR3	+	chr9	132986678	132991565	GFI1B|ENST00000636263.1	+	132986678,132987281,132988196,132989060,132989645,132990871	132986778,132987419,132988468,132989198,132989907,132991565	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	200888597	200888598	200888597	-	High_confidence	5	5	8	0.219512	2.750000	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	48492783	48492791	48492783	-	High_confidence	10	12	21	0.576219	4.021928	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	101120839	101120886	101120885	+	High_confidence	3	4	12	0.329268	3.277613	chr14	101120596	101120905	LTR|ERVL-MaLR|MLT1J2	-	chr14	101120855	101123542	LINC02285|ENST00000557121.1	+	101120855,101122888	101121144,101123542	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	167985003	167985038	167985037	-	RAMPAGE_only	4	4	15	0.411585	3.323231	chr1	167984836	167985184	LTR|ERVL-MaLR|THE1B	-	chr1	167916674	167937069	MPC2|NM_001143674.3	-	167916674,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937069	0.733333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	20674403	20674419	20674404	+	High_confidence	15	20	40	1.097561	4.131687	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674406	20682176	MSTRG.9726.2	+	20674406,20674673,20679157	20674477,20674822,20682176	0.775000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	56642458	56642479	56642458	-	RAMPAGE_only	5	5	13	0.356707	3.022055	chr12	56642329	56642417	SINE|Alu|AluJb	-	chr12	56638174	56645279	ATP5F1B|ENST00000548474.2	-	56638174,56639105,56645170	56638423,56639196,56645279	0.846154
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	222733221	222733242	222733221	+	RAMPAGE_only	2	3	7	0.192073	2.521641	chr1	222733044	222733380	SINE|Alu|AluSx	-	chr1	222713320	222735196	BROX|NM_001288580.1	+	222713320,222715683,222718924,222719262,222724091,222725449,222727167,222728742,222729619,222730026,222731356,222732627	222713416,222715800,222719031,222719359,222724164,222725555,222727257,222728828,222729701,222730177,222731516,222735196	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65431952	65432069	65432016	+	RAMPAGE_only	11	11	78	2.140243	4.817083	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422799	65445488	MSTRG.4447.4	+	65422799,65423294,65437240,65444287,65445449	65423212,65437184,65444263,65445407,65445488	0.961538
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	9191949	9192005	9192004	+	RAMPAGE_only	33	66	228	6.256095	6.597164	chr18	9191625	9192172	LTR|ERVL|MER74A	+	chr18	9182385	9254273	ANKRD12|ENST00000546007.6	+	9182385,9195550,9208656,9211583,9216757,9221851,9254210	9182519,9195698,9208797,9211784,9216900,9221999,9254273	0.688596
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	102727691	102727714	102727691	+	RAMPAGE_only	4	4	14	0.384146	3.467720	chr10	102727660	102728003	LINE|L2|L2c	-	chr10	102714540	102739189	SFXN2|NM_178858.4	+	102714540,102726611,102726986,102728430,102729318,102729722,102731722,102732151,102732858,102733553,102735861,102737662	102714681,102726797,102727157,102728529,102729394,102729808,102731783,102732218,102732908,102733603,102735909,102739189	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	32479863	32479875	32479863	+	High_confidence	3	3	11	0.301829	3.277613	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.727273
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	95117603	95117616	95117615	+	High_confidence	2	2	7	0.192073	2.521641	chr1	95117576	95117935	LINE|L1|L1M4b	+	chr1	95117337	95197607	TMEM56|NM_152487.2	+	95117337,95143890,95148701,95150207,95151324,95173815,95191549	95117617,95144056,95148791,95150266,95151419,95173889,95197607	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	42098225	42098284	42098283	-	RAMPAGE_only	11	11	27	0.740853	4.310443	chr12	42098282	42098429	SINE|MIR|MIR	+	chr12	42087144	42144712	GXYLT1|ENST00000280876.6	-	42087144,42097441,42097909,42105817,42109565,42118999,42144425	42087947,42097614,42098033,42106069,42109691,42119171,42144712	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	138212993	138213020	138212993	-	High_confidence	3	3	9	0.246951	3.000000	chr5	138212862	138212945	LINE|CR1|L3	-	chr5	138187647	138213343	CDC23|ENST00000394886.6	-	138187647,138189632,138189827,138191473,138191861,138192268,138192503,138198198,138198425,138198604,138201106,138201342,138202112,138206546,138212990,138213151	138189148,138189752,138189906,138191535,138191937,138192388,138192657,138198280,138198523,138198782,138201239,138201448,138202155,138206684,138213063,138213343	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	235865123	235865124	235865123	-	RAMPAGE_only	6	6	7	0.192073	2.584963	chr1	235864944	235865509	LINE|L2|L2a	+	chr1	235829408	235866876	LYST|ENST00000468626.2	-	235829408,235833577,235866842	235830424,235833667,235866876	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	7732792	7732793	7732792	-	High_confidence	13	14	14	0.384146	3.546594	chr19	7732758	7732907	SINE|Alu|FLAM_C	+	chr19	7728956	7732792	MSTRG.12933.1	-	7728956,7729820,7730018,7730350,7730754,7731025,7731265,7731660,7732047,7732791	7729504,7729936,7730167,7730440,7730859,7731088,7731319,7731771,7732122,7732792	0.928571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	134875055	134875087	134875079	+	High_confidence	3	3	12	0.329268	3.418296	chr5	134874872	134875108	SINE|MIR|MIRb	-	chr5	134875095	134888180	TXNDC15|ENST00000508810.1	+	134875095,134887694	134875188,134888180	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	44126632	44126652	44126651	+	High_confidence	37	38	82	2.249999	5.537140	chr6	44126578	44126686	LINE|CR1|X7A_LINE	-	chr6	44126625	44148334	MSTRG.22001.2	+	44126625,44126797,44127722,44134560,44135016,44135327,44136348,44138479,44139466,44139707,44140251,44141027,44146846,44147376,44148251	44126715,44127141,44127866,44134743,44135096,44135366,44136439,44138517,44139609,44139759,44140360,44141098,44146927,44147500,44148334	0.963415
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	57650652	57650678	57650671	+	High_confidence	38	43	184	5.048779	6.667489	chr5	57650666	57651278	LINE|L1|L1PB4	-	chr5	57650659	57670989	LOC101928505|NR_104668.1	+	57650659,57665250,57669689	57650759,57665512,57670989	0.516304
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	37811009	37811100	37811099	+	RAMPAGE_only	6	7	37	1.015244	4.114718	chrX	37811068	37811312	SINE|MIR|MIRc	-	chrX	37780016	37813461	CYBB|NM_000397.3	+	37780016,37782087,37783489,37791974,37793664,37795950,37798954,37801255,37803876,37805005,37806386,37809566,37810790	37780122,37782183,37783600,37792059,37793810,37796141,37799084,37801348,37804130,37805168,37806533,37809691,37813461	0.945946
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	118501128	118501144	118501128	+	RAMPAGE_only	2	3	8	0.219512	2.750000	chr11	118501175	118501485	SINE|Alu|AluSz6	+	chr11	118495190	118505185	KMT2A|ENST00000528278.2	+	118495190,118498369,118501671,118502397	118498073,118501147,118501857,118505185	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	35311038	35311077	35311057	+	High_confidence	7	8	36	0.987805	3.438858	chr22	35310706	35311148	LINE|L2|L2c	-	chr22	35311061	35323819	TOM1|ENST00000443206.2	+	35311061,35317876,35321958,35323027,35323495,35323767	35311127,35317961,35322037,35323177,35323630,35323819	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	76551126	76551129	76551126	-	High_confidence	4	4	8	0.219512	2.750000	chr17	76550828	76551081	SINE|MIR|MIRb	-	chr17	76528533	76551175	CYGB|ENST00000589145.1	-	76528533,76530978,76531459,76550861	76528611,76531142,76531691,76551175	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	74607769	74607924	74607879	-	RAMPAGE_only	6	6	61	1.673780	5.545331	chr15	74607843	74608029	LINE|L2|L2c	+	chr15	74598918	74610575	MSTRG.8977.1	-	74598918,74603686,74604284,74608213,74609601,74610302	74602781,74603754,74608015,74609129,74609759,74610575	0.983607
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	9109558	9109559	9109558	-	RAMPAGE_only	7	7	10	0.274390	3.169925	chr3	9109543	9109955	LINE|L2|L2c	-	chr3	9006978	9124977	SRGAP3|ENST00000618999.4	-	9006978,9010307,9013307,9013736,9014741,9015596,9025260,9026934,9028099,9032649,9038062,9047390,9049260,9053026,9056232,9058250,9060230,9064395,9080024,9104679,9124724	9008347,9010387,9013535,9013842,9014841,9015731,9025338,9026995,9028130,9032752,9038090,9047475,9049469,9053224,9056334,9058472,9060359,9064581,9080087,9104842,9124977	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	81192654	81192717	81192660	-	RAMPAGE_only	6	6	32	0.878048	4.440224	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.906250
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	146222436	146222472	146222466	-	High_confidence	43	46	175	4.801828	5.994628	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146194356	146222433	MSTRG.18679.5	-	146194356,146195123,146196631,146199812,146201034,146206525,146220814,146222064,146222199	146194455,146195282,146196793,146200039,146201077,146206761,146220925,146222092,146222433	0.960000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	135635641	135635642	135635641	+	RAMPAGE_only	7	7	8	0.219512	2.521641	chr2	135635690	135635767	SINE|MIR|MIR	+	chr2	135633711	135639114	R3HDM1|ENST00000486532.5	+	135633711,135635889,135636087,135638617,135638738,135638895	135633828,135635998,135636183,135638655,135638789,135639114	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	174410024	174410040	174410024	+	High_confidence	2	2	9	0.246951	2.641604	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410036	174428859	SCRN3|ENST00000548921.5	+	174410036,174422884,174424474,174427712	174410225,174423047,174424649,174428859	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	156752197	156752236	156752197	-	High_confidence	5	5	29	0.795731	4.182006	chr1	156752098	156752165	LINE|L2|L2c	-	chr1	156742106	156752232	HDGF|NM_001126051.1	-	156742106,156743651,156744162,156745007,156745296,156752037	156743455,156743878,156744348,156745146,156745373,156752232	0.965517
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	95652246	95652317	95652246	+	RAMPAGE_only	14	14	37	1.015244	5.014997	chr5	95652248	95653198	LINE|L2|L2a	+	chr5	95654060	95656333	RFESD|ENST00000513950.2	+	95654060,95656045	95654236,95656333	0.783784
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	122721158	122721159	122721158	+	RAMPAGE_only	14	14	16	0.439024	3.202820	chr12	122721123	122721174	SINE|MIR|MIR3	+	chr12	122752773	122771064	DENR|ENST00000280557.10	+	122752773,122753692,122762186,122762844,122765303,122767487,122768781,122769033	122752950,122753807,122762206,122762929,122765387,122767604,122768921,122771064	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	10700759	10700774	10700773	-	RAMPAGE_only	5	5	12	0.329268	3.251629	chr12	10700575	10700819	SINE|MIR|MIR	-	chr12	10699316	10702475	YBX3|ENST00000540975.5	-	10699316,10701253,10701959,10702411	10699654,10701353,10702134,10702475	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	35164201	35164212	35164201	+	High_confidence	3	3	10	0.274390	2.947703	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	17336685	17336720	17336685	+	High_confidence	15	15	36	0.987805	4.650572	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.722222
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	118692058	118692065	118692058	+	RAMPAGE_only	3	4	8	0.219512	2.750000	chr4	118692102	118692201	DNA|TcMar-Tigger|Tigger19a	+	chr4	118697210	118710601	METTL14|ENST00000506780.2	+	118697210,118700549,118703934,118709997	118697323,118700642,118704051,118710601	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	60402874	60402893	60402886	-	High_confidence	85	111	300	8.231704	6.359877	chr15	60402666	60403161	LINE|L2|L2c	+	chr15	60364428	60402883	ANXA2|ENST00000557904.5	-	60364428,60382341,60386027,60402768	60364523,60382441,60386086,60402883	0.680000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	72135670	72135730	72135724	+	High_confidence	7	8	46	1.262195	4.739991	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	0.934783
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	49086520	49086547	49086546	+	High_confidence	32	32	49	1.344512	4.940841	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.510204
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	23543085	23543087	23543085	+	RAMPAGE_only	2	4	6	0.164634	2.584963	chr8	23543065	23543364	SINE|Alu|AluJr	-	chr8	23541686	23566378	SLC25A37|ENST00000520949.1	+	23541686,23543087,23566107	23541839,23543211,23566378	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	113118026	113118027	113118026	+	High_confidence	8	8	8	0.219512	2.500000	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	58431149	58431150	58431149	+	High_confidence	160	168	198	5.432925	6.594846	chr15	58431102	58431256	LINE|L2|L2a	+	chr15	58431677	58569843	MSTRG.8732.4	+	58431677,58431992,58538332,58541784,58542533,58545741,58548329,58560863,58563504,58568715	58431776,58432120,58538517,58541967,58542651,58545975,58548572,58560981,58563723,58569843	0.904040
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	39320321	39320335	39320334	-	High_confidence	4	4	8	0.219512	2.521641	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	37058852	37058907	37058886	-	RAMPAGE_only	6	7	36	0.987805	3.911752	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.861111
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	139344535	139344548	139344547	+	High_confidence	254	254	542	14.871946	5.792640	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.963100
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	102431228	102431248	102431247	-	High_confidence	14	15	70	1.920731	5.061211	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.885714
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	69268746	69268747	69268746	-	High_confidence	8	8	11	0.301829	3.321928	chr17	69268468	69268963	LTR|ERVL|LTR105_Mam	+	chr17	69248259	69268874	ABCA5|ENST00000586811.1	-	69248259,69249904,69250471,69251746,69253572,69253793,69254314,69255542,69255732,69256156,69259705,69260337,69261124,69261634,69264734,69267942,69268719	69248317,69249984,69250621,69251866,69253667,69253869,69254490,69255634,69255850,69256283,69259797,69260412,69261259,69261748,69264905,69268056,69268874	0.727273
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	42824796	42824805	42824804	-	RAMPAGE_only	3	3	8	0.219512	2.750000	chr1	42824524	42824995	LTR|ERVL|LTR16E1	-	chr1	42807051	42817388	SVBP|NM_199342.3	-	42807051,42816430,42817189	42807500,42816580,42817388	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	103726159	103726163	103726159	+	RAMPAGE_only	2	3	7	0.192073	2.807355	chr12	103726206	103726503	SINE|Alu|AluSz6	+	chr12	103587290	103766724	STAB2|NM_017564.9	+	103587290,103590896,103594394,103620467,103622041,103631597,103637110,103638015,103640122,103648689,103650495,103652555,103654554,103655250,103655455,103660330,103660682,103662845,103666290,103668642,103669540,103670695,103673906,103675927,103677452,103683204,103684988,103688167,103689845,103690423,103692811,103695549,103695736,103699095,103703147,103704557,103705631,103706791,103708440,103711470,103712366,103713642,103715814,103717769,103724974,103726115,103727266,103728848,103730115,103731575,103733005,103735490,103737633,103739411,103740629,103742404,103745172,103746596,103748962,103750578,103753219,103755301,103755611,103758169,103759132,103761299,103762273,103763491,103766285	103587557,103591030,103594510,103620553,103622111,103631693,103637236,103638212,103640256,103648823,103650578,103652705,103654698,103655307,103655581,103660384,103660763,103662998,103666353,103668729,103669627,103670807,103674087,103676021,103677611,103683300,103685084,103688215,103689982,103690538,103692889,103695648,103695844,103699227,103703276,103704614,103705727,103706987,103708536,103711516,103712443,103713768,103715888,103717841,103725094,103726163,103727350,103728995,103730256,103731635,103733182,103735580,103737780,103739468,103740756,103742554,103745277,103746704,103749156,103750720,103753353,103755467,103755718,103758289,103759273,103761410,103762402,103763608,103766724	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	4129085	4129134	4129116	+	RAMPAGE_only	4	4	22	0.603658	4.061482	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	108125047	108125048	108125047	+	High_confidence	5	7	8	0.219512	2.807355	chr3	108124858	108125222	LTR|ERVL-MaLR|THE1C	+	chr3	108125063	108138610	LINC01215|NR_110030.1	+	108125063,108136313	108125142,108138610	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	73078286	73078288	73078286	+	RAMPAGE_only	5	9	10	0.274390	3.121928	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	70092479	70092491	70092490	+	RAMPAGE_only	23	29	65	1.783536	5.350141	chr10	70092452	70092527	LTR|ERVL-MaLR|MLT1A0	+	chr10	70052879	70109180	H2AFY2|ENST00000455786.1	+	70052879,70075599,70090059,70093734,70095653,70100207,70109032	70053000,70075830,70090166,70093845,70095753,70100297,70109180	0.753846
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	73104198	73104252	73104198	-	High_confidence	31	31	166	4.554876	6.250882	chr4	73103951	73104200	DNA|hAT-Charlie|Charlie2b	-	chr4	73075685	73104231	MSTRG.19510.3	-	73075685,73076939,73077354,73078641,73085248,73090666,73094078,73097116,73098072,73102375,73104002	73076290,73077104,73077533,73078890,73085446,73092300,73094228,73097272,73098520,73102547,73104231	0.975904
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	34860645	34860665	34860653	-	High_confidence	3	3	10	0.274390	2.646439	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.600000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	95664876	95664900	95664876	+	High_confidence	4	5	18	0.493902	3.947703	chr14	95664736	95664975	LTR|ERVL-MaLR|MLT1H	-	chr14	95664861	95670414	TCL6|ENST00000486671.1	+	95664861,95668125	95665076,95670414	0.722222
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	25301031	25301065	25301064	+	RAMPAGE_only	2	2	6	0.164634	2.584963	chr1	25301102	25301235	DNA|hAT-Tip100|MamTip2	+	chr1	25272547	25330445	MSTRG.440.8	+	25272547,25284572,25290640,25300945,25301519,25303321,25306595,25316999,25317740,25328897	25272695,25284759,25290791,25301093,25301686,25303459,25306729,25317615,25321962,25330445	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	159005961	159005962	159005961	+	High_confidence	15	15	16	0.439024	3.773557	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	77710836	77710866	77710865	+	High_confidence	2	3	9	0.246951	2.750000	chr14	77710914	77711213	LINE|L1|L1MA1	+	chr14	77710643	77717584	SLIRP|ENST00000556956.1	+	77710643,77715771,77717495	77710896,77715879,77717584	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	32537176	32537199	32537176	-	High_confidence	23	24	56	1.536585	3.637999	chr20	32537119	32537267	SINE|MIR|MIRb	-	chr20	32464779	32536397	NOL4L|ENST00000375678.7	-	32464779,32474600,32511346,32520810,32527757,32532316,32533375,32535440	32465134,32474742,32511456,32520922,32527913,32532416,32533485,32536397	0.928571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	72111482	72111497	72111482	-	High_confidence	3	3	10	0.274390	3.121928	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72108817	72111497	ANAPC15|ENST00000538117.5	-	72108817,72109228,72110087,72110543,72111156,72111411	72108875,72109341,72110225,72110603,72111281,72111497	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	151539265	151539321	151539320	-	RAMPAGE_only	4	4	16	0.439024	3.327820	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	207760611	207760656	207760611	-	RAMPAGE_only	2	2	11	0.301829	2.921928	chr2	207760599	207760812	LINE|L1|L1MD3	+	chr2	207753871	207765888	MSTRG.15705.2	-	207753871,207754889	207754824,207765888	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	31997378	31997379	31997378	+	High_confidence	131	137	140	3.841462	4.471250	chr4	31996206	31997789	LTR|ERV1|LTR12C	+	chr4	31997378	32155406	LOC102723828|NR_125936.1	+	31997378,32146052,32155313	31997822,32146267,32155406	0.928571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	85390202	85390253	85390207	-	High_confidence	22	23	54	1.481707	5.001122	chr6	85390133	85390460	LINE|L2|L2c	+	chr6	85387218	85390186	LINC02535|ENST00000455071.1	-	85387218,85390012	85389557,85390186	0.962963
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	70993073	70993074	70993073	+	High_confidence	26	26	27	0.740853	4.209867	chr4	70992983	70993102	SINE|MIR|MIR	+	chr4	70993438	71030914	DCK|ENST00000286648.9	+	70993438,70998066,71022366,71023558,71025815,71026664,71029351	70993926,70998182,71022560,71023706,71025931,71026755,71030914	0.962963
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	118883651	118883652	118883651	-	RAMPAGE_only	10	10	11	0.301829	3.321928	chr5	118883474	118883828	LTR|ERVL-MaLR|THE1D	-	chr5	118836073	118988220	DTWD2|NM_001308081.1	-	118836073,118848089,118928536,118939195,118944558,118988129	118841087,118848218,118928729,118939290,118944649,118988220	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	28291847	28291848	28291847	+	High_confidence	36	39	41	1.125000	4.351906	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.658537
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	116390239	116390242	116390239	+	RAMPAGE_only	3	3	8	0.219512	2.750000	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	42519287	42519288	42519287	+	RAMPAGE_only	8	8	10	0.274390	3.169925	chr22	42519127	42519409	LINE|L2|L2c	-	chr22	42553616	42558412	SERHL2|ENST00000447870.6	+	42553616,42554937,42555231,42555663,42556063,42556513,42558347	42553713,42555087,42555345,42555705,42556083,42556588,42558412	0.600000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	77532106	77532113	77532106	+	High_confidence	6	6	10	0.274390	3.121928	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	57274833	57274843	57274842	+	RAMPAGE_only	6	6	17	0.466463	3.969816	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.529412
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	57794069	57794070	57794069	+	RAMPAGE_only	6	6	9	0.246951	3.169925	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	184382383	184382404	184382383	-	High_confidence	5	5	13	0.356707	3.392747	chr4	184382179	184382738	LTR|ERVL|LTR67B	+	chr4	184365560	184382306	LOC102723766|NR_125934.1	-	184365560,184365825,184371668,184372338,184376440,184382133	184365646,184365947,184371807,184372480,184376544,184382306	0.538462
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	96884158	96884166	96884158	+	RAMPAGE_only	5	5	12	0.329268	2.550341	chr10	96884093	96884240	DNA|hAT-Charlie|Charlie1	+	chr10	96832318	96949126	MSTRG.3421.3	+	96832318,96833405,96884402,96907264,96907667,96944112,96949007	96832399,96833841,96886155,96907330,96907747,96944245,96949126	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	6866552	6866635	6866552	-	High_confidence	34	34	105	2.881097	6.051307	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.771429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	4642178	4642179	4642178	+	RAMPAGE_only	5	5	8	0.219512	2.521641	chr16	4642124	4642285	SINE|Alu|AluSz	-	chr16	4650386	4680067	MGRN1|ENST00000590790.5	+	4650386,4651962,4652677,4657245,4664708,4665098,4668264,4671390,4673497,4677462,4680031	4650483,4652051,4652824,4657363,4664775,4665151,4668312,4671459,4673657,4677572,4680067	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	105252260	105252265	105252260	+	RAMPAGE_only	6	6	13	0.356707	3.251629	chr9	105252255	105252368	LINE|L2|L2c	+	chr9	105244621	105397346	SLC44A1|ENST00000374723.5	+	105244621,105299219,105309723,105335562,105348357,105356211,105358343,105361190,105362820,105364554,105365482,105366345,105374597,105383122,105385421,105389903	105244904,105299309,105309866,105335699,105348451,105356381,105358433,105361330,105363007,105364720,105365639,105366429,105374735,105383359,105385502,105397346	0.846154
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	5010312	5010313	5010312	-	High_confidence	62	62	68	1.865853	5.268221	chr20	5010113	5010529	LTR|ERVL|MLT2B2	-	chr20	4852355	5010293	SLC23A2|ENST00000379333.5	-	4852355,4859288,4861947,4862777,4867769,4869905,4873935,4874575,4883641,4884752,4885820,4899554,4902441,4912879,4932454,4970792,5010181	4857204,4859384,4862085,4862907,4867875,4870053,4874092,4874696,4883823,4884823,4885909,4899712,4902558,4912978,4932716,4970919,5010293	0.779412
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65382645	65382702	65382645	-	High_confidence	8	8	21	0.576219	4.106603	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65379452	65382645	SLC25A45|ENST00000529962.5	-	65379452,65379866,65380131,65380533,65381874,65382485	65379561,65379938,65380175,65380622,65381969,65382645	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	73841871	73841896	73841876	-	High_confidence	7	7	20	0.548780	3.321928	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.900000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	94283661	94283966	94283794	-	RAMPAGE_only	65	66	686	18.823164	6.177360	chr14	94283344	94283825	DNA|TcMar-Tigger|MER44B	+	chr14	94283354	94290648	SERPINA10|ENST00000554173.1	-	94283354,94286107,94288285,94289875	94284156,94286258,94288559,94290648	0.973761
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	80369526	80369557	80369531	+	High_confidence	2	2	12	0.329268	3.095795	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	227534916	227534951	227534916	+	RAMPAGE_only	7	8	27	0.740853	4.132944	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	118054580	118054613	118054580	-	RAMPAGE_only	3	5	12	0.329268	3.095795	chr8	118054490	118054728	SINE|MIR|MIRb	-	chr8	117931463	118066324	MSTRG.24762.6	-	117931463,117959338,117968876,118032172	117959269,117968525,118032099,118066324	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	24887184	24887185	24887184	-	RAMPAGE_only	26	26	29	0.795731	4.083617	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24841324	24878027	ADCY3|ENST00000433852.1	-	24841324,24841555,24842253,24872569,24877921	24841386,24841667,24842384,24872719,24878027	0.896552
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	23951347	23951372	23951371	+	High_confidence	5	5	18	0.493902	3.725481	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	24193510	24193527	24193526	-	RAMPAGE_only	24	29	89	2.442072	4.333911	chr6	24191693	24193872	LINE|L1|HAL1	+	chr6	24171755	24205303	DCDC2|ENST00000378450.6	-	24171755,24178329,24205001	24174834,24178632,24205303	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	74000284	74000299	74000298	+	RAMPAGE_only	4	6	8	0.219512	3.000000	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	41044829	41044830	41044829	+	RAMPAGE_only	11	12	16	0.439024	4.000000	chr20	41044807	41045087	SINE|Alu|AluSz6	-	chr20	41028821	41124487	TOP1|NM_003286.2	+	41028821,41029430,41061393,41076170,41077581,41080084,41081164,41084461,41092471,41097219,41098214,41100055,41101208,41112781,41113969,41115370,41116277,41118168,41121695,41122005,41123194	41029100,41029455,41061490,41076294,41077637,41080180,41081240,41084568,41092587,41097341,41098337,41100243,41101353,41112925,41114155,41115439,41116392,41118296,41121790,41122155,41124487	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	80485592	80485644	80485618	+	High_confidence	8	9	31	0.850609	4.453881	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.903226
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	95247977	95247978	95247977	-	RAMPAGE_only	9	9	14	0.384146	3.238901	chr13	95247843	95248316	LINE|L1|L1MC4	+	chr13	95095796	95301302	ABCC4|ENST00000643556.1	-	95095796,95115921,95161188,95163121,95163609,95164377,95166157,95170531,95177706,95177996,95186700,95188452,95194835,95206531,95207799,95209433,95210691,95234609,95246974,95247642,95266111,95301240	95096179,95116001,95161335,95163216,95163647,95164518,95166367,95170628,95177793,95178091,95186892,95188542,95194937,95206781,95207925,95209597,95210781,95234834,95247095,95247753,95266264,95301302	0.785714
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	32182052	32182061	32182058	-	High_confidence	89	116	266	7.298778	5.219070	chr6	32181711	32182032	SINE|Alu|AluSp	-	chr6	32180967	32181635	AGER|ENST00000469940.5	-	32180967,32181350	32181239,32181635	0.962406
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	98301037	98301052	98301037	-	RAMPAGE_only	5	7	12	0.329268	3.022055	chr7	98301016	98301084	LINE|L2|L2c	+	chr7	98291650	98401068	BAIAP2L1|ENST00000005260.8	-	98291650,98294073,98304195,98306438,98307688,98310444,98312096,98315459,98317218,98320057,98320236,98355041,98362356,98400801	98293596,98294111,98304376,98306516,98307896,98310592,98312264,98315612,98317356,98320129,98320298,98355128,98362432,98401068	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	50016128	50016147	50016144	-	RAMPAGE_only	6	6	19	0.521341	3.058814	chr19	50016092	50016166	DNA|hAT-Ac|OldhAT1	-	chr19	49994862	50020647	VRK3|ENST00000599342.5	-	49994862,50000789,50007568,50009235,50015731,50016023,50020584	49994919,50000854,50007826,50009385,50015793,50016163,50020647	0.947368
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	57003836	57003848	57003847	+	High_confidence	6	8	16	0.439024	3.773557	chr16	57003841	57003968	SINE|MIR|MIR	-	chr16	57003852	57020936	NLRC5|ENST00000544641.5	+	57003852,57017073,57020700	57004095,57017188,57020936	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	98733203	98733231	98733230	+	High_confidence	5	5	21	0.576219	3.880180	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.904762
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	135635674	135635684	135635674	+	RAMPAGE_only	5	5	9	0.246951	2.641604	chr2	135635690	135635767	SINE|MIR|MIR	+	chr2	135633711	135639114	R3HDM1|ENST00000486532.5	+	135633711,135635889,135636087,135638617,135638738,135638895	135633828,135635998,135636183,135638655,135638789,135639114	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	6853886	6853950	6853928	+	High_confidence	19	19	102	2.798780	5.847831	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6895102	ALOX12P2|ENST00000576636.6	+	6853929,6854213,6892002,6894883,6895095	6854060,6854453,6892075,6895006,6895102	0.568627
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	58943580	58943619	58943580	+	High_confidence	6	6	18	0.493902	3.614369	chr11	58943541	58944242	LTR|ERV1|MER57-int	+	chr11	58943370	58955334	GLYATL1|ENST00000524881.5	+	58943370,58943542,58947045,58947857,58954769,58955175	58943460,58943666,58947165,58947965,58954896,58955334	0.944444
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	32722858	32722959	32722916	-	RAMPAGE_only	7	8	41	1.125000	4.070951	chr7	32722612	32722956	LTR|ERVL-MaLR|MLT1L	-	chr7	32580938	32719168	DPY19L1P1|NR_036680.1	-	32580938,32581571,32585976,32590878,32593183,32620403,32621012,32623360,32632542,32635251,32639273,32655986,32675931,32676787,32678992,32716717,32719135	32581313,32581664,32586136,32591004,32593306,32620484,32621072,32623439,32632620,32635351,32639365,32656044,32676025,32676908,32679130,32716809,32719168	0.804878
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	118410133	118410164	118410136	+	RAMPAGE_only	4	4	19	0.521341	3.836592	chr12	118409994	118410233	LINE|L2|L2b	+	chr12	118401771	118414655	SUDS3|ENST00000541591.5	+	118401771,118403411,118411072,118414334	118401820,118403517,118411157,118414655	0.526316
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	94581617	94581619	94581618	+	High_confidence	6	10	12	0.329268	2.845351	chr14	94581654	94581760	SINE|MIR|MIRb	+	chr14	94581614	94593115	SERPINA5|ENST00000554276.1	+	94581614,94587345,94590040,94590748,94592056	94581710,94587981,94590311,94590896,94593115	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	200411683	200411800	200411799	+	High_confidence	575	583	1419	38.935962	6.716956	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411799	200475513	AC104461.1|ENST00000634596.1	+	200411799,200473908	200411962,200475513	0.784355
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	40350408	40350464	40350445	-	RAMPAGE_only	6	6	28	0.768292	4.236369	chr13	40350403	40350604	SINE|MIR|MIR3	+	chr13	40284776	40403766	LINC00598|ENST00000636192.1	-	40284776,40343956,40350108,40403598	40285666,40344205,40350302,40403766	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	9114076	9114085	9114078	-	RAMPAGE_only	24	40	61	1.673780	5.259679	chr12	9113988	9114066	SINE|MIR|MIRc	-	chr12	9067707	9115962	A2M|NM_000014.4	-	9067707,9068182,9068739,9069744,9070487,9072358,9072652,9074559,9076755,9077345,9077700,9079243,9079638,9080093,9089199,9089901,9090355,9091200,9093464,9094972,9095538,9098606,9099380,9101143,9101446,9104238,9106235,9106490,9107523,9109320,9109866,9110313,9112158,9112376,9113359,9115763	9067839,9068224,9068842,9069813,9070578,9072486,9072871,9074783,9076936,9077420,9077857,9079331,9079815,9080177,9089251,9090023,9090482,9091429,9093579,9095084,9095700,9098756,9099523,9101207,9101674,9104400,9106345,9106605,9107644,9109405,9110035,9110334,9112211,9112536,9113543,9115962	0.836066
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	52800575	52800663	52800635	+	RAMPAGE_only	26	33	126	3.457316	6.399550	chr3	52800685	52800758	SINE|MIR|MIR1_Amn	+	chr3	52794797	52809009	ITIH3|ENST00000449956.2	+	52794797,52795602,52796480,52796738,52797104,52797816,52798965,52799371,52799752,52800537,52800964,52802333,52802666,52803854,52804725,52805807,52806102,52806292,52806900,52807746,52808109,52808551	52794896,52795623,52796647,52796843,52797267,52797930,52799091,52799488,52799921,52800663,52801146,52802519,52802806,52804009,52804734,52805840,52806138,52806406,52807105,52807916,52808221,52809009	0.801587
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	204140044	204140073	204140061	-	RAMPAGE_only	5	5	14	0.384146	3.238901	chr1	204139662	204140016	DNA|TcMar-Tigger|Tigger3a	-	chr1	204131955	204141262	ETNK2|ENST00000367197.5	-	204131955,204134514,204137103,204140034,204141024	204132256,204134588,204137249,204140118,204141262	0.928571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	123758125	123758126	123758125	-	High_confidence	4	7	7	0.192073	2.521641	chr9	123758093	123758254	SINE|MIR|MIRb	-	chr9	123569544	123757759	DENND1A|ENST00000474676.1	-	123569544,123583168,123609435,123630375,123652012,123667025,123671290,123757702	123569595,123583270,123609481,123630476,123652123,123667079,123671371,123757759	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	31533436	31533480	31533479	+	High_confidence	2	2	7	0.192073	2.807355	chr3	31533377	31533564	LINE|L1|L1M4b	-	chr3	31533624	31617005	STT3B|ENST00000462235.5	+	31533624,31576395,31579808,31596797,31600359,31615104,31616928	31533686,31576504,31580096,31596863,31600459,31615203,31617005	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	8056883	8056884	8056883	+	High_confidence	1289	1291	1301	35.698158	7.418957	chr17	8056835	8057031	LTR|ERVK|LTR14	+	chr17	8056890	8073936	MSTRG.10790.1	+	8056890,8064913	8063060,8073936	0.977709
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100914802	100914874	100914829	+	RAMPAGE_only	6	9	54	1.481707	5.156889	chr14	100914604	100915346	LTR|ERVL|MER54A	+	chr14	100906043	100947076	MSTRG.8059.73	+	100906043,100906935,100913431,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100906163,100910304,100931545,100936310,100937488,100938956,100940450,100942838,100944925,100947076	0.981481
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	54867168	54867202	54867168	-	RAMPAGE_only	9	10	31	0.850609	4.220168	chr1	54867161	54867293	SINE|MIR|MIRb	+	chr1	54852366	54886836	DHCR24|ENST00000647585.1	-	54852366,54853433,54854036,54865302,54871349,54875092,54875941,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54883773,54886836	0.967742
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	32677404	32677409	32677404	+	High_confidence	16	21	46	1.262195	4.646072	chr15	32677294	32677614	LTR?|LTR?|MamRep605	+	chr15	32677559	32697096	MSTRG.8288.7	+	32677559,32679765,32684556,32691709,32696513	32677744,32679915,32684669,32691763,32697096	0.913043
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	232816700	232816766	232816731	+	RAMPAGE_only	5	5	19	0.521341	3.892407	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.894737
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	177022091	177022093	177022092	+	High_confidence	3	5	7	0.192073	2.584963	chr5	177021951	177022107	LINE|L2|L2a	-	chr5	177022679	177067982	ZNF346|NR_131773.1	+	177022679,177041125,177041777,177050750,177062057,177064511	177022913,177041229,177041870,177050936,177062151,177067982	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	79631254	79631329	79631302	+	High_confidence	389	389	1641	45.027424	6.847344	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.977453
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	20423697	20423704	20423703	-	RAMPAGE_only	5	6	10	0.274390	3.169925	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.600000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	125201280	125201291	125201280	+	High_confidence	2	3	8	0.219512	2.500000	chr9	125200941	125201383	LINE|L2|L2b	-	chr9	125200604	125220658	RABEPK|ENST00000416065.1	+	125200604,125207563,125213369,125220538	125200906,125207721,125213522,125220658	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65434515	65434629	65434583	+	RAMPAGE_only	12	13	131	3.594511	5.565653	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422799	65445488	MSTRG.4447.4	+	65422799,65423294,65437240,65444287,65445449	65423212,65437184,65444263,65445407,65445488	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	2990740	2990761	2990754	-	RAMPAGE_only	17	17	94	2.579267	4.888967	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.914894
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	70590328	70590329	70590328	+	RAMPAGE_only	9	9	13	0.356707	3.022055	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.846154
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	42824750	42824751	42824750	+	High_confidence	28	28	28	0.768292	4.735926	chr1	42824524	42824995	LTR|ERVL|LTR16E1	-	chr1	42825559	42844989	ERMAP|ENST00000372514.7	+	42825559,42830443,42830767,42835037,42835731,42837157,42838900,42840032,42840151,42840269,42842516	42825738,42830533,42831115,42835154,42835764,42837190,42838921,42840053,42840178,42840296,42844989	0.928571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	20696372	20696418	20696413	+	RAMPAGE_only	42	42	185	5.076218	6.264406	chr7	20693389	20696610	LINE|L1|L1ME1	+	chr7	20647421	20755624	ABCB5|ENST00000258738.10	+	20647421,20647967,20650021,20651419,20658505,20681504,20685695,20698406,20699824,20700057,20704723,20723015,20727039,20728314,20738982,20742876,20745231,20753359,20755426	20647648,20648078,20650147,20651623,20658676,20681666,20685836,20698550,20699929,20700135,20704807,20723219,20727140,20728455,20739139,20743074,20745438,20753506,20755624	0.686486
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	48683361	48683363	48683362	+	High_confidence	74	145	145	3.978657	5.097363	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.979310
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	67920061	67920100	67920092	+	High_confidence	2	2	10	0.274390	3.121928	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	82164525	82164559	82164525	+	RAMPAGE_only	170	175	269	7.381095	7.261326	chr10	82164219	82164583	LINE|L1|L1MA4A	-	chr10	82157213	82367493	MSTRG.3286.8	+	82157213,82166726,82358738	82164696,82166826,82367493	0.520446
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	218645180	218645215	218645205	-	RAMPAGE_only	5	6	18	0.493902	3.734522	chr2	218645106	218645348	SINE|MIR|MIR	-	chr2	218638144	218659502	ZNF142|ENST00000433921.5	-	218638144,218640663,218642027,218646170,218648634,218650358,218651700,218656149,218658700,218658979,218659368	218638808,218640769,218645064,218646348,218649459,218650526,218651822,218656463,218658801,218659130,218659502	0.944444
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	33068830	33068896	33068841	-	RAMPAGE_only	3	3	32	0.878048	3.866729	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.968750
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	80148048	80148049	80148048	+	High_confidence	47	47	48	1.317073	5.129057	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	58312280	58312284	58312283	+	RAMPAGE_only	4	5	10	0.274390	2.947703	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.700000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	50443293	50443319	50443318	-	High_confidence	13	13	54	1.481707	5.250665	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50396191	50443248	MSTRG.20373.1	-	50396191,50399858,50402285,50403177,50405724,50410876,50411196,50428143,50442951,50443189	50399290,50399913,50402319,50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	127330853	127330878	127330853	-	High_confidence	4	4	20	0.548780	3.932138	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.800000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	73119750	73119770	73119769	+	RAMPAGE_only	8	8	20	0.548780	3.821928	chr10	73119659	73119842	LINE|L2|L2c	-	chr10	73110529	73131828	NUDT13|ENST00000372997.3	+	73110529,73114356,73120017,73122174,73124213,73125117,73126672,73130702	73110567,73114448,73120157,73122309,73124320,73125243,73126827,73131828	0.700000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	36471439	36471468	36471454	-	High_confidence	3	3	15	0.411585	3.378783	chr1	36471346	36471414	SINE|MIR|MIR	-	chr1	36466082	36471474	CSF3R|ENST00000464465.6	-	36466082,36467229,36467557,36467821,36468074,36469651,36471432	36466827,36467311,36467651,36467962,36468221,36469840,36471474	0.933333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	123055657	123055891	123055707	+	RAMPAGE_only	14	14	125	3.429877	5.771070	chr10	123055482	123055832	LTR|ERVL-MaLR|THE1A-int	-	chr10	123009015	123058311	ACADSB|ENST00000358776.6	+	123009015,123034355,123037746,123040465,123041208,123043045,123044392,123047208,123051048,123053060,123053694	123009071,123034515,123037847,123040672,123041379,123043171,123044485,123047298,123051186,123053160,123058311	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	169966345	169966534	169966397	+	High_confidence	59	61	410	11.249996	6.705685	chr3	169966447	169966552	DNA|hAT-Charlie|MER5A	+	chr3	169966634	169982857	MSTRG.18833.1	+	169966634,169968384,169975607,169976945,169982706	169966858,169968591,169975716,169977051,169982857	0.929268
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100934259	100934307	100934259	+	RAMPAGE_only	8	8	24	0.658536	3.663533	chr14	100934026	100934356	LINE|L1|L1MC1	-	chr14	100906043	100947076	MSTRG.8059.73	+	100906043,100906935,100913431,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100906163,100910304,100931545,100936310,100937488,100938956,100940450,100942838,100944925,100947076	0.916667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	11992174	11992192	11992174	+	RAMPAGE_only	2	2	12	0.329268	3.027169	chr1	11992159	11992392	SINE|MIR|MIR	-	chr1	11980311	12013508	MFN2|ENST00000235329.9	+	11980311,11981969,11989164,11992554,11996155,11997296,11998769,11998987,12001400,12001768,12001981,12003991,12004508,12004824,12005710,12006537,12007052,12009591,12011495	11980484,11982114,11989343,11992690,11996318,11997421,11998878,11999095,12001554,12001836,12002103,12004118,12004613,12004927,12005931,12006693,12007249,12009726,12013508	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	58526760	58526766	58526765	-	High_confidence	261	264	413	11.332313	6.317500	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	0.978208
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	104889644	104889681	104889663	-	RAMPAGE_only	16	17	103	2.826219	5.587442	chr9	104889298	104889665	LINE|L2|L2c	+	chr9	104855565	104928139	ABCA1|ENST00000423487.6	-	104855565,104858521,104861678,104883038,104884426,104889101,104903613,104927934	104856088,104858698,104861800,104883157,104884568,104889195,104903771,104928139	0.650485
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	113758055	113758082	113758055	-	RAMPAGE_only	3	3	11	0.301829	3.459432	chr1	113758040	113758255	SINE|Alu|AluSq2	+	chr1	113697201	113759155	PHTF1|ENST00000393357.6	-	113697201,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113759155	0.818182
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	46740208	46740223	46740208	-	RAMPAGE_only	2	3	9	0.246951	2.947703	chr16	46740207	46740388	SINE|MIR|MIRb	-	chr16	46725775	46738137	MYLK3|ENST00000564731.5	-	46725775,46729023,46729593,46730592,46732207,46737710	46727377,46729133,46729687,46730698,46732668,46738137	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	149222126	149222133	149222132	-	High_confidence	3	3	8	0.219512	2.807355	chr3	149222056	149222177	LINE|L2|L2b	+	chr3	149172498	149222055	CP|ENST00000264613.10	-	149172498,149176249,149177839,149178414,149179555,149182004,149183465,149185238,149186519,149188051,149198366,149199711,149202101,149206167,149207362,149209210,149210166,149212450,149221646	149173730,149176412,149177979,149178631,149179662,149182133,149183605,149185446,149186732,149188202,149198578,149199864,149202241,149206339,149207617,149209384,149210379,149212698,149222055	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	144303186	144303210	144303186	+	RAMPAGE_only	8	8	17	0.466463	3.852169	chr6	144302995	144303202	LINE|L2|L2c	-	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.529412
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	130894344	130894379	130894344	-	RAMPAGE_only	4	4	14	0.384146	3.807355	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	0.928571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	57496517	57496568	57496517	-	RAMPAGE_only	2	2	14	0.384146	3.026987	chr11	57496393	57496514	DNA|hAT-Charlie|Charlie16a	-	chr11	57493992	57515686	MSTRG.4256.7	-	57493992,57496030,57500778,57500987,57501151,57513957,57515099,57515443	57494171,57497845,57500855,57501043,57501329,57514124,57515201,57515686	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	75611178	75611200	75611178	+	High_confidence	5	6	12	0.329268	3.251629	chr5	75610835	75611347	Retroposon|SVA|SVA_A	-	chr5	75611458	75671846	ANKDD1B|ENST00000601380.2	+	75611458,75616803,75620314,75625646,75625850,75634897,75635783,75653141,75656028,75659282,75663393,75666791,75669251,75670978	75611827,75616907,75620413,75625745,75625955,75634996,75635882,75653240,75656127,75659381,75663489,75666993,75669383,75671846	0.833333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	86482577	86482578	86482577	+	RAMPAGE_only	5	6	8	0.219512	2.750000	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	32222880	32222888	32222880	+	High_confidence	11	11	19	0.521341	3.471354	chr1	32222814	32223048	SINE|Alu|AluJo	+	chr1	32222439	32229208	EIF3I|ENST00000483517.5	+	32222439,32226170,32226402,32228498,32228726,32229134	32222630,32226320,32226530,32228609,32228816,32229208	0.947368
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	193656716	193656763	193656716	+	High_confidence	150	161	598	16.408531	7.064236	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193656765	193695408	MSTRG.19018.32	+	193656765,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193656922,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695408	0.988294
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	50924078	50924079	50924078	+	High_confidence	11	14	14	0.384146	3.182006	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	123060124	123060253	123060168	-	High_confidence	92	103	666	18.274384	5.701318	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.597598
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	71999614	71999642	71999614	+	High_confidence	18	25	69	1.893292	4.905277	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.956522
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	153119468	153119469	153119468	-	RAMPAGE_only	16	16	19	0.521341	3.932138	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112113	153113515	SPRR2F|ENST00000468739.1	-	153112113,153113473	153112752,153113515	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	25244030	25244247	25244109	-	High_confidence	18	22	193	5.295730	4.495528	chr1	25244059	25244116	SINE|Alu|Alu	-	chr1	25242248	25244105	RSRP1|ENST00000569495.5	-	25242248,25242538,25243549	25242426,25242705,25244105	0.984456
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	74614925	74614941	74614940	+	High_confidence	3	5	10	0.274390	2.921928	chr15	74614989	74615037	SINE|MIR|MIRc	+	chr15	74614993	74630201	CLK3|NM_001130028.1	+	74614993,74619196,74620008,74622119,74622493,74624901,74625801,74627351,74627538,74627969,74628603,74628941,74629706	74615898,74619348,74620225,74622216,74622560,74625018,74625968,74627446,74627668,74628052,74628683,74629032,74630201	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	99620866	99620962	99620961	+	RAMPAGE_only	5	5	34	0.932927	4.294246	chr15	99620843	99621144	SINE|Alu|AluSx1	-	chr15	99632977	99716488	MEF2A|NM_001130928.2	+	99632977,99671322,99674392,99675398,99690240,99706728,99710633,99712389	99633173,99671454,99674612,99675458,99690428,99706855,99710760,99716488	0.735294
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	33301449	33301528	33301449	-	RAMPAGE_only	9	9	57	1.564024	5.061413	chr6	33301291	33301595	SINE|Alu|AluSx	+	chr6	33299693	33314387	TAPBP|ENST00000434618.6	-	33299693,33303954,33304127,33304296,33304988,33313216,33313693,33314004	33301771,33303989,33304217,33304638,33305387,33313477,33313864,33314387	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	95042538	95042539	95042538	-	RAMPAGE_only	4	5	7	0.192073	2.807355	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	174874418	174874454	174874418	+	High_confidence	74	83	309	8.478656	7.130573	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.556634
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	120472013	120472014	120472013	-	RAMPAGE_only	5	5	8	0.219512	2.521641	chr9	120471976	120472122	LINE|L1|L1ME4a	-	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	18076304	18076305	18076304	-	High_confidence	8	8	9	0.246951	2.750000	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18066766	18076305	ASAH1|ENST00000637872.1	-	18066766,18069791,18071299,18075540,18076176	18067298,18069878,18071390,18075587,18076305	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	128104796	128104823	128104796	-	RAMPAGE_only	2	2	8	0.219512	2.807355	chr3	128104760	128104822	LINE|CR1|L3	-	chr3	128081181	128100744	RUVBL1|ENST00000478892.1	-	128081181,128082482,128087705,128097299,128098881,128100594	128081409,128082574,128087844,128097498,128098945,128100744	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	92536625	92536704	92536674	-	High_confidence	104	109	506	13.884142	6.741268	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.901186
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	54200529	54200585	54200568	+	High_confidence	3	3	18	0.493902	3.572469	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.611111
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	32531086	32531113	32531086	-	RAMPAGE_only	2	2	11	0.301829	2.846439	chr13	32530755	32531300	LTR|ERVL-MaLR|MLT1F2	+	chr13	32443965	32536383	MSTRG.6760.23	-	32443965,32480589,32517856,32521372,32522181	32444126,32480637,32518003,32521449,32536383	0.909091
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	80344732	80344733	80344732	+	High_confidence	129	131	133	3.649389	6.003172	chr10	80344537	80344891	LTR|ERVL-MaLR|THE1A	+	chr10	80344744	80368073	DYDC2|NR_070308.1	+	80344744,80352436,80356259,80362434,80362950,80366687	80344815,80352617,80356596,80362590,80363073,80368073	0.654135
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	122218272	122218273	122218272	-	High_confidence	9	9	11	0.301829	3.095795	chr12	122218031	122218232	DNA|hAT-Charlie|MER58A	-	chr12	122208315	122218289	DIABLO|ENST00000439489.6	-	122208315,122209696,122216487,122216758,122218265	122208577,122209858,122216584,122216869,122218289	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	89889028	89889048	89889028	+	RAMPAGE_only	18	19	32	0.878048	4.027518	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	39335662	39335673	39335672	-	High_confidence	8	9	13	0.356707	3.251629	chr19	39335628	39335746	DNA|hAT-Tip100|MER91A	-	chr19	39328358	39335531	GMFG|ENST00000596583.5	-	39328358,39328999,39329547,39333076,39335434	39328548,39329073,39329626,39333126,39335531	0.923077
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	46374832	46374833	46374832	-	RAMPAGE_only	9	9	9	0.246951	2.725481	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46371940	46378645	RUBCNL|ENST00000439642.1	-	46371940,46377889,46378446	46372597,46378005,46378645	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	93455105	93455185	93455182	+	RAMPAGE_only	52	52	171	4.692072	4.758485	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.894737
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	65300634	65300635	65300634	-	High_confidence	9	9	9	0.246951	3.169925	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65266576	65300618	PARP16|ENST00000558873.1	-	65266576,65270934,65282546,65300196	65266768,65271072,65282632,65300618	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	158620492	158620566	158620536	-	High_confidence	11	11	50	1.371951	4.759762	chr1	158620518	158620587	LINE|CR1|L3	+	chr1	158619185	158620789	SPTA1|ENST00000484520.1	-	158619185,158620169	158619334,158620789	0.540000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	49657515	49657519	49657515	-	High_confidence	6	6	10	0.274390	3.121928	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620455	49657542	C22orf34|NM_001289922.2	-	49620455,49624177,49624446,49624857,49626842,49656623	49620660,49624253,49624681,49624936,49627047,49657542	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	208542699	208542713	208542712	+	High_confidence	3	3	8	0.219512	2.521641	chr2	208542564	208543130	LTR|ERVL|MLT2B3	-	chr2	208542641	208825587	LOC101927960|NR_136588.1	+	208542641,208572012,208656825,208819551,208824194,208825398	208542991,208572167,208656989,208819655,208824350,208825587	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	158614490	158614521	158614520	-	High_confidence	5	5	17	0.466463	3.280639	chr1	158614426	158614750	DNA|hAT-Charlie|MER58B	+	chr1	158612748	158614535	SPTA1|ENST00000481212.5	-	158612748,158613720,158614252	158612961,158613867,158614535	0.647059
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	11864408	11864420	11864408	-	RAMPAGE_only	6	6	14	0.384146	3.546594	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11844339	11868079	CTSB|ENST00000345125.7	-	11844339,11845660,11847051,11847678,11848066,11849045,11850865,11852609,11853328,11861360,11868000	11845222,11845789,11847168,11847822,11848152,11849164,11850980,11852695,11853479,11861479,11868079	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	5405484	5405492	5405484	-	RAMPAGE_only	3	4	9	0.246951	3.000000	chr17	5405410	5405629	DNA|hAT-Charlie|MER20	+	chr17	5386101	5419466	NUP88|ENST00000225696.8	-	5386101,5386707,5386983,5387385,5387604,5387778,5388801,5391560,5394890,5399551,5404098,5405056,5408732,5410702,5414008,5416512,5419353	5386269,5386826,5387110,5387466,5387670,5387952,5388960,5391662,5394981,5399650,5404246,5405243,5408909,5410789,5414134,5416682,5419466	0.777778
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	65439955	65439985	65439955	+	RAMPAGE_only	4	4	15	0.411585	3.521641	chr11	65439978	65440104	SINE|Alu|FLAM_C	+	chr11	65422799	65445488	MSTRG.4447.4	+	65422799,65423294,65437240,65444287,65445449	65423212,65437184,65444263,65445407,65445488	0.933333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	28526372	28526374	28526372	-	RAMPAGE_only	5	11	14	0.384146	3.392747	chr16	28526223	28526649	LTR|ERV1|MER67A	+	chr16	28499361	28506834	IL27|ENST00000356897.1	-	28499361,28501975,28503694,28503877,28506780	28499920,28502134,28503793,28504050,28506834	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	11399001	11399054	11399001	+	High_confidence	6	6	33	0.905487	4.620152	chr2	11398957	11399426	LTR|ERVL-MaLR|MSTA-int	+	chr2	11399053	11402258	LINC00570|ENST00000453100.1	+	11399053,11402024	11399218,11402258	0.636364
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	79424604	79424666	79424648	-	RAMPAGE_only	24	24	55	1.509146	5.055361	chr10	79424376	79424743	LINE|L2|L2	+	chr10	79386036	79444219	ZCCHC24|ENST00000372333.3	-	79386036,79394275,79432557,79444101	79386458,79394440,79432758,79444219	0.618182
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	110440313	110440374	110440313	-	RAMPAGE_only	16	19	91	2.496950	5.994005	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.956044
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	38078772	38078788	38078772	+	RAMPAGE_only	5	5	14	0.384146	3.085055	chr4	38078433	38078801	LTR|ERVL-MaLR|MLT1A	+	chr4	38020676	38137743	TBC1D1|ENST00000510573.6	+	38020676,38021585,38027787,38035587,38044361,38045816,38049617,38053105,38054198,38089931,38095928,38102998,38115709,38118032,38124961,38133083,38137134	38020695,38021718,38027879,38035698,38044490,38045903,38049898,38053225,38054338,38090117,38096090,38103157,38115954,38118192,38125131,38133257,38137743	0.928571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	32703646	32703661	32703650	+	High_confidence	7	7	26	0.713414	4.418296	chr3	32703312	32703822	DNA|TcMar-Tigger|MER44B	-	chr3	32703790	32713349	CNOT10|ENST00000485136.5	+	32703790,32704810,32708669,32713226	32703962,32704972,32708820,32713349	0.923077
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	155555213	155555219	155555215	-	RAMPAGE_only	14	23	41	1.125000	4.839776	chr3	155555213	155555573	LTR|ERVL-MaLR|MLT1J2	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	0.853659
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	47289917	47289918	47289917	+	High_confidence	16	16	23	0.631097	3.969002	chr19	47289949	47290265	LINE|L1|L1M1	+	chr19	47290022	47307754	C5AR1|ENST00000595501.5	+	47290022,47291977,47307368,47307724	47290061,47292173,47307510,47307754	0.652174
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	20674447	20674458	20674457	+	High_confidence	5	5	10	0.274390	2.947703	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674406	20682176	MSTRG.9726.2	+	20674406,20674673,20679157	20674477,20674822,20682176	0.700000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	36481508	36481537	36481508	-	RAMPAGE_only	3	3	17	0.466463	3.852169	chr1	36481405	36481665	SINE|MIR|MIR	+	chr1	36466581	36482899	MSTRG.654.10	-	36466581,36467229,36467557,36467821,36468074,36469155,36469651,36471432,36472065,36472237,36472516,36473434,36473763,36475376,36481477,36482810	36466827,36467311,36467651,36467962,36468221,36469257,36469840,36471646,36472139,36472391,36472686,36473622,36473887,36479516,36481537,36482899	0.941176
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	52263816	52263865	52263816	+	RAMPAGE_only	11	11	45	1.234756	4.564820	chrX	52263654	52264096	LTR|ERVL|MLT2A2	+	chrX	52369009	52375683	XAGE2|NM_130777.2	+	52369009,52370006,52370566,52372543,52375568	52369214,52370095,52370672,52372669,52375683	0.822222
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	200857745	200857841	200857745	-	High_confidence	3	3	40	1.097561	4.612815	chr2	200857615	200857696	LINE|L1|L1MA8	-	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.850000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	16635170	16635171	16635170	-	RAMPAGE_only	7	7	10	0.274390	2.646439	chr1	16635030	16635337	SINE|Alu|AluSx	-	chr1	16618252	16643109	MSTRG.315.1	-	16618252,16619844,16625774,16626352,16627144,16628467,16630889,16631529,16632274,16633094,16635026,16642766,16643027	16619103,16620024,16626005,16626499,16627289,16628650,16631109,16631613,16632371,16633346,16635168,16642850,16643109	0.600000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	69315814	69315870	69315818	+	High_confidence	400	550	2560	70.243878	8.096135	chr10	69315806	69315937	SINE|MIR|MIRc	+	chr10	69315784	69401443	HK1|ENST00000298649.8	+	69315784,69343826,69359896,69364782,69368535,69369236,69369440,69376933,69379861,69382486,69384332,69384795,69386322,69389196,69392124,69394949,69398594,69400990	69316014,69343989,69360045,69364902,69368631,69369336,69369624,69377089,69380095,69382791,69384481,69384915,69386418,69389296,69392308,69395105,69398828,69401443	0.625000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	95653156	95653176	95653156	+	High_confidence	3	3	9	0.246951	3.000000	chr5	95652248	95653198	LINE|L2|L2a	+	chr5	95654060	95656333	RFESD|ENST00000513950.2	+	95654060,95656045	95654236,95656333	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	7575264	7575313	7575264	-	RAMPAGE_only	5	5	23	0.631097	4.186704	chr12	7575005	7575582	LINE|L1|L1MB8	+	chr12	7470812	7503893	CD163|ENST00000359156.8	-	7470812,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7503644	7471397,7479996,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7503893	0.739130
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	72758550	72758575	72758550	-	High_confidence	2	2	8	0.219512	3.000000	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72759309	STARD10|ENST00000537351.5	-	72754728,72755121,72755700,72757766,72758529,72759233	72754782,72755142,72755753,72757884,72758633,72759309	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	68307080	68307128	68307107	-	High_confidence	52	53	225	6.173778	4.495556	chr10	68307029	68307329	SINE|Alu|AluSx1	-	chr10	68287026	68306879	PBLD|ENST00000277795.8	-	68287026,68292009,68292128,68296885,68306760	68289019,68292039,68292238,68296985,68306879	0.933333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	87562702	87562723	87562722	-	RAMPAGE_only	3	3	7	0.192073	2.584963	chr6	87562493	87562687	LINE|L2|L2b	-	chr6	87514377	87590003	RARS2|ENST00000369536.9	-	87514377,87514956,87516805,87518168,87518629,87518823,87519582,87520179,87521463,87524556,87529541,87530783,87541917,87545615,87548590,87555407,87562701,87564129,87569516,87589921	87514499,87515020,87516880,87518264,87518739,87518891,87519707,87520256,87521524,87524652,87529648,87530942,87541994,87545699,87548646,87555505,87562785,87564232,87569590,87590003	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	94119471	94119493	94119471	+	RAMPAGE_only	8	8	21	0.576219	4.121928	chr13	94119131	94119537	LINE|L2|L2a	-	chr13	94286347	94403217	GPC6|ENST00000617456.1	+	94286347,94305979,94382413,94398465,94403014	94286479,94306123,94382550,94398641,94403217	0.523810
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	38687133	38687152	38687135	-	RAMPAGE_only	99	129	359	9.850606	5.825018	chr6	38687125	38687432	LTR|ERVL|LTR16C	+	chr6	38675942	38683215	GLO1|ENST00000470973.1	-	38675942,38682011,38682807	38677383,38682101,38683215	0.779944
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	2975611	2975657	2975621	+	RAMPAGE_only	2	2	9	0.246951	3.000000	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	78245687	78245688	78245687	-	High_confidence	309	310	313	8.588412	5.124111	chr15	78245271	78246702	LTR|ERV1|LTR12C	-	chr15	78170913	78245688	ACSBG1|ENST00000560817.5	-	78170913,78173592,78174384,78178613,78179549,78180754,78181968,78182465,78182704,78245268	78171529,78173839,78174524,78178831,78179780,78180936,78182145,78182615,78182785,78245688	0.948882
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	154975497	154975525	154975518	+	High_confidence	7	7	18	0.493902	3.503258	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.944444
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	84368670	84368718	84368698	-	High_confidence	11	11	44	1.207317	5.078639	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.750000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	4736361	4736404	4736361	-	High_confidence	8	9	35	0.960366	3.685588	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.828571
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	65570509	65570529	65570521	+	High_confidence	30	49	110	3.018292	5.926986	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.627273
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	9140393	9140428	9140393	+	High_confidence	46	46	182	4.993901	6.336224	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.714286
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	54616893	54616894	54616893	+	High_confidence	9	9	9	0.246951	2.947703	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54616929	54637556	LILRB1|NM_006669.6	+	54616929,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637556	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	1962183	1962219	1962218	-	RAMPAGE_only	5	5	12	0.329268	3.418296	chr12	1961963	1962446	LTR|ERVL|MER74B	-	chr12	1952776	1966141	DCP1B|ENST00000536665.5	-	1952776,1955431,1965557,1966079	1953288,1955560,1965693,1966141	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	112850323	112850324	112850323	+	High_confidence	6	6	9	0.246951	3.169925	chr1	112850184	112850373	SINE|MIR|MIR	+	chr1	112850075	112877867	AL390729.1|ENST00000422022.1	+	112850075,112877729	112850427,112877867	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	283506	283509	283506	+	High_confidence	19	24	39	1.070122	4.879506	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.820513
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	139363387	139363388	139363387	+	RAMPAGE_only	4	4	6	0.164634	2.584963	chr7	139363363	139363531	SINE|MIR|MIR1_Amn	+	chr7	139359911	139422511	MSTRG.23797.13	+	139359911,139363175,139374400,139376061,139398598,139402136,139405643,139407173,139409562,139412550,139417537	139360322,139371463,139375583,139376156,139398697,139402247,139405787,139407350,139409654,139412580,139422511	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	143039256	143039267	143039266	+	High_confidence	6	6	15	0.411585	3.506891	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	26957017	26957077	26957017	+	High_confidence	10	10	48	1.317073	5.043296	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26956992	27023924	LINC00240|ENST00000606878.1	+	26956992,26968457,27023253	26957183,26968522,27023924	0.687500
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	8244545	8244563	8244554	-	High_confidence	2	2	7	0.192073	2.584963	chr8	8244455	8244522	LTR|ERV1|MER57A-int	-	chr8	8237673	8244667	ALG1L13P|ENST00000523017.5	-	8237673,8238190,8239494,8240428,8241321,8242786,8244459	8237719,8238301,8239554,8240549,8241400,8242926,8244667	0.857143
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	13674984	13674991	13674984	-	RAMPAGE_only	4	4	10	0.274390	2.725481	chr6	13674973	13676011	LINE|L1|L1MCa	+	chr6	13654477	13691223	MSTRG.21503.3	-	13654477,13686394	13685852,13691223	0.500000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	80991858	80991935	80991894	-	High_confidence	21	21	78	2.140243	5.681307	chr16	80991652	80991991	LINE|L1|L1MC3	+	chr16	80975801	80991955	CMC2|ENST00000566231.5	-	80975801,80981805,80991753	80976179,80981877,80991955	0.858974
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	76041147	76041207	76041147	+	High_confidence	6	6	31	0.850609	4.280226	chr1	76041086	76041403	SINE|Alu|AluSq2	-	chr1	76041690	76066228	AC092813.2|ENST00000434540.1	+	76041690,76066037	76041898,76066228	0.516129
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	6711030	6711034	6711033	+	High_confidence	3	5	9	0.246951	2.750000	chr6	6710804	6711035	LTR|ERV1|MER92-int	-	chr6	6710475	6733438	MSTRG.21453.1	+	6710475,6717809,6728995	6711067,6717928,6733438	0.555556
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	222599982	222600015	222600010	-	RAMPAGE_only	3	4	11	0.301829	2.921928	chr2	222599989	222600062	LINE|RTE-BovB|MamRTE1	-	chr2	222570535	222656337	FARSB|ENST00000281828.6	-	222570535,222599927,222613810,222619644,222623649,222624271,222624713,222628836,222630112,222631603,222633198,222634390,222639579,222640861,222642850,222648739,222656015	222572022,222600083,222613928,222619737,222623730,222624479,222624775,222628888,222630174,222631674,222633307,222634541,222639695,222640931,222643005,222648795,222656337	0.727273
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	231047577	231047677	231047631	+	RAMPAGE_only	38	38	143	3.923779	4.176090	chr2	231047505	231047693	DNA|hAT-Charlie|MER20	+	chr2	231041106	231049719	C2orf72|ENST00000463834.1	+	231041106,231046881	231041409,231049719	1.000000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	6952982	6952985	6952982	-	RAMPAGE_only	41	43	84	2.304877	5.319220	chr8	6952819	6952939	LTR|ERVL|MER54B	-	chr8	6950725	6951599	DEFA8P|ENST00000457582.1	-	6950725,6951427	6950838,6951599	0.523810
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	102431154	102431180	102431154	-	High_confidence	7	7	21	0.576219	3.471354	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.904762
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	94735759	94735760	94735759	-	RAMPAGE_only	305	306	306	8.396339	5.686739	chr14	94735486	94735994	LTR|ERVL-MaLR|MLT1H1	+	chr14	94378375	94390693	SERPINA1|ENST00000393088.8	-	94378375,94379463,94380870,94382591,94388559,94388800,94390456	94378640,94379611,94381141,94383241,94388663,94389010,94390693	0.996732
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	116648828	116648917	116648864	-	RAMPAGE_only	10	12	48	1.317073	4.890531	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.958333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	145687846	145687868	145687867	-	RAMPAGE_only	2	2	9	0.246951	2.750000	chr1	145687814	145687888	DNA|hAT-Ac|OldhAT1	-	chr1	145670984	145691802	PDZK1|ENST00000344770.6	-	145670984,145672729,145673656,145678448,145680911,145682499,145686476,145687811,145691731	145671489,145673020,145673881,145678645,145681107,145682636,145686726,145688023,145691802	0.888889
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	35474784	35474785	35474784	+	High_confidence	4	4	7	0.192073	2.584963	chr20	35474682	35474875	SINE|MIR|MIRb	+	chr20	35474000	35478096	CEP250|ENST00000425096.1	+	35474000,35474793,35475501,35476448,35477870	35474052,35474852,35475646,35476595,35478096	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	51878032	51878065	51878032	-	High_confidence	3	3	14	0.384146	3.392747	chr1	51877640	51878001	LINE|CR1|L3	-	chr1	51789191	51878040	NRDC|NM_001242361.1	-	51789191,51789567,51790532,51790899,51791577,51792045,51792376,51794471,51794822,51798248,51800555,51803813,51805509,51806793,51809314,51810280,51811993,51814034,51814550,51814692,51816311,51818065,51819799,51821497,51823663,51825286,51827795,51834016,51836130,51836368,51837486,51840225,51877982	51789433,51789657,51790649,51790990,51791661,51792098,51792424,51794610,51794854,51798411,51800683,51803964,51805561,51806913,51809401,51810404,51812098,51814089,51814609,51814813,51816389,51818135,51819873,51821555,51823786,51825382,51827869,51834170,51836212,51836438,51837620,51840514,51878040	0.571429
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	143824476	143824567	143824566	-	RAMPAGE_only	17	17	82	2.249999	5.700659	chr3	143824344	143824714	LINE|L2|L2a	+	chr3	143693209	143848485	SLC9A9|ENST00000474727.2	-	143693209,143795000,143796825,143848147	143693307,143795077,143796903,143848485	0.512195
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	32620154	32620171	32620170	+	RAMPAGE_only	3	3	8	0.219512	2.521641	chr15	32620202	32620425	SINE|Alu|AluJb	+	chr15	32615570	32637903	ARHGAP11A|ENST00000543522.5	+	32615570,32615804,32620107,32623491,32624172,32625079,32625486,32628727,32629594,32632978,32633932,32635776,32636256	32615607,32615918,32620178,32623588,32624426,32625243,32625633,32628802,32629762,32633108,32634041,32635915,32637903	0.875000
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	73072209	73072234	73072233	-	High_confidence	7	7	21	0.576219	4.201841	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.666667
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	18794077	18794086	18794077	+	High_confidence	9	9	23	0.631097	3.913977	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.956522
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	141530064	141530082	141530064	-	RAMPAGE_only	4	4	12	0.329268	3.418296	chr5	141529801	141530088	SINE|Alu|AluJb	+	chr5	141528544	141534488	DIAPH1|ENST00000494967.5	-	141528544,141528701,141529171,141529602,141534334	141528582,141528941,141529273,141529697,141534488	0.583333
liver_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	8790625	8790652	8790637	-	RAMPAGE_only	24	27	86	2.359755	5.752146	chr1	8790603	8790885	SINE|Alu|AluSz6	-	chr1	8352396	8817465	RERE|ENST00000337907.7	-	8352396,8355418,8356099,8358195,8359763,8360111,8361762,8362682,8364055,8364745,8365811,8422726,8465924,8495062,8497404,8508626,8541213,8556474,8557417,8614560,8624309,8655972,8792403,8817159	8355120,8355599,8356246,8358916,8359986,8361490,8361876,8362844,8364255,8364838,8365974,8422807,8466023,8495162,8497529,8508675,8541318,8556571,8557523,8614686,8624380,8656441,8792588,8817465	0.872093
liver_male_adult_32_years	chr14	81820076	81820108	81820107	-	High_confidence	147	150	282	11.538439	5.896633	chr14	81819891	81820257	LTR|ERVL-MaLR|MLT1A1	-	chr14	81810619	81820093	STRG.103597.1	-	81810619,81816305,81818133,81819959	81811953,81816384,81818270,81820093	0.897163
liver_male_adult_32_years	chr9	120395642	120395677	120395652	-	RAMPAGE_only	8	8	31	1.268410	4.257111	chr9	120395586	120396182	DNA|TcMar-Tigger|Tigger13a	+	chr9	120389195	120401019	CDK5RAP2|ENST00000474262.5	-	120389195,120389740,120394511,120400741	120389292,120389787,120394638,120401019	0.935484
liver_male_adult_32_years	chr17	8310240	8310250	8310240	+	High_confidence	6	6	13	0.531914	2.855389	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.846154
liver_male_adult_32_years	chr3	180870518	180870519	180870518	-	High_confidence	6	8	8	0.327332	2.750000	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180750617	180870544	STRG.32807.3	-	180750617,180781983,180847506,180870046	180751410,180782124,180847624,180870544	0.875000
liver_male_adult_32_years	chr11	18706991	18706997	18706996	-	RAMPAGE_only	4	4	8	0.327332	2.807355	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18704304	18726180	IGSF22|ENST00000513874.5	-	18704304,18705816,18706913,18707803,18708206,18709386,18710326,18710654,18712081,18713851,18714276,18714499,18715431,18716727,18717930,18718614,18719715,18720063,18720185,18721534,18721909,18724127,18726073	18704538,18706146,18707213,18707996,18708295,18709683,18710455,18710828,18712384,18714148,18714418,18714624,18715716,18717000,18718093,18718728,18719893,18720103,18720285,18721671,18722041,18724269,18726180	0.500000
liver_male_adult_32_years	chrX	37888695	37888808	37888705	+	High_confidence	130	131	893	36.538391	5.637698	chrX	37888475	37888778	SINE|Alu|AluY	+	chrX	37888527	37889508	STRG.133165.1	+	37888527	37889508	0.913774
liver_male_adult_32_years	chr3	139344537	139344555	139344547	+	High_confidence	443	443	950	38.870629	6.069225	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.896842
liver_male_adult_32_years	chr17	6798240	6798283	6798240	+	High_confidence	2	2	9	0.368248	2.641604	chr17	6798105	6798325	SINE|MIR|MIRb	-	chr17	6798007	6799997	STRG.113336.1	+	6798007,6799106	6799015,6799997	0.888889
liver_male_adult_32_years	chr1	52912971	52912985	52912974	-	High_confidence	2	2	7	0.286415	2.584963	chr1	52912718	52912985	SINE|Alu|AluSp	-	chr1	52899173	52912830	ECHDC2|ENST00000487866.5	-	52899173,52904645,52905033,52906518,52907867,52911565,52911722,52912753	52899224,52904833,52905090,52906611,52907954,52911653,52912021,52912830	0.571429
liver_male_adult_32_years	chr11	307588	307640	307588	+	High_confidence	17	18	55	2.250405	4.997370	chr11	307491	307788	SINE|Alu|AluY	-	chr11	307630	309230	IFITM2|ENST00000533141.1	+	307630,308230,309012	307792,308438,309230	0.745455
liver_male_adult_32_years	chr1	8240000	8240055	8240054	+	High_confidence	4	4	14	0.572830	2.842371	chr1	8239979	8240262	SINE|Alu|AluSc8	-	chr1	8240015	8248962	STRG.428.1	+	8240015,8244189,8248613	8240123,8244300,8248962	1.000000
liver_male_adult_32_years	chr1	153967486	153967512	153967486	+	High_confidence	29	31	81	3.314233	5.154950	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153973072	STRG.7653.7	+	153967533,153968521,153968929,153969333,153972743,153972971	153967884,153968699,153969176,153969455,153972836,153973072	0.913580
liver_male_adult_32_years	chr15	75347012	75347076	75347065	+	High_confidence	9	9	45	1.841240	4.819305	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347068	75349024	NEIL1|ENST00000568881.1	+	75347068,75347958,75348883	75347473,75347999,75349024	0.777778
liver_male_adult_32_years	chr3	188003349	188003388	188003387	-	High_confidence	3	3	8	0.327332	2.750000	chr3	188003354	188003555	DNA|hAT-Blackjack|MER63A	+	chr3	188001699	188003406	AC092941.2|ENST00000444379.1	-	188001699,188003278	188002579,188003406	0.625000
liver_male_adult_32_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	68	72	80	3.273316	5.319092	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.712500
liver_male_adult_32_years	chr17	58519747	58519781	58519780	+	High_confidence	6	6	15	0.613747	3.324863	chr17	58519636	58519861	SINE|Alu|AluY	-	chr17	58519836	58556925	SEPT4-AS1|ENST00000580589.5	+	58519836,58525700,58543456,58544535,58556808	58519977,58525817,58543598,58544671,58556925	0.600000
liver_male_adult_32_years	chr18	7946875	7946879	7946878	+	High_confidence	7	7	14	0.572830	2.873141	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.928571
liver_male_adult_32_years	chr19	571725	571774	571725	-	High_confidence	5	5	18	0.736496	3.725481	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567310	571734	AC009005.1|ENST00000590292.5	-	567310,571439,571696	567624,571596,571734	0.944444
liver_male_adult_32_years	chr5	109952016	109952028	109952016	+	High_confidence	8	10	23	0.941078	4.142915	chr5	109951861	109952212	LTR|ERVL-MaLR|MLT1A0	+	chr5	109952037	109957887	STRG.45787.1	+	109952037	109957887	0.695652
liver_male_adult_32_years	chr9	123758091	123758126	123758103	-	High_confidence	11	11	40	1.636658	4.785152	chr9	123758093	123758254	SINE|MIR|MIRb	-	chr9	123569544	123757759	DENND1A|ENST00000474676.1	-	123569544,123583168,123609435,123630375,123652012,123667025,123671290,123757702	123569595,123583270,123609481,123630476,123652123,123667079,123671371,123757759	0.700000
liver_male_adult_32_years	chr12	70468214	70468215	70468214	+	High_confidence	6	6	6	0.245499	2.584963	chr12	70467961	70468294	LTR|ERV1|MER61A	+	chr12	70468084	70543040	AC025569.1|ENST00000548687.5	+	70468084,70510211,70510407,70513184,70520198,70520785,70522523,70527674,70538049	70468327,70510284,70510577,70513227,70520267,70520928,70522630,70527738,70543040	0.500000
liver_male_adult_32_years	chr22	18149844	18149871	18149863	+	High_confidence	5	6	26	1.063828	3.979098	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.961538
liver_male_adult_32_years	chr9	114319300	114319320	114319319	-	High_confidence	8	8	27	1.104744	4.469670	chr9	114319086	114319413	LINE|L2|L2	+	chr9	114294325	114319654	STRG.76807.1	-	114294325,114318193,114319102	114309832,114318330,114319654	0.814815
liver_male_adult_32_years	chr12	30755030	30755041	30755030	+	High_confidence	2	2	7	0.286415	2.584963	chr12	30754999	30755260	LINE|L1|L1M4b	+	chr12	30755038	30756728	STRG.91833.1	+	30755038	30756728	0.714286
liver_male_adult_32_years	chr18	70335254	70335354	70335353	+	High_confidence	26	30	114	4.664475	4.224579	chr18	70335288	70335395	DNA|hAT-Charlie|Charlie24	-	chr18	70335438	70352459	LINC01909|ENST00000584919.1	+	70335438,70336057,70336321,70351978	70335506,70336140,70336504,70352459	0.929825
liver_male_adult_32_years	chr4	186260300	186260309	186260308	-	High_confidence	170	183	267	10.924693	5.024442	chr4	186259848	186260334	DNA|hAT-Charlie|MER1A	-	chr4	186247288	186260352	STRG.41305.1	-	186247288,186258245	186251634,186260352	0.955056
liver_male_adult_32_years	chr16	66503723	66503755	66503723	-	RAMPAGE_only	18	18	40	1.636658	4.165838	chr16	66503539	66503681	LINE|L1|L1ME4a	-	chr16	66495783	66504896	STRG.111843.4	-	66495783	66504896	0.775000
liver_male_adult_32_years	chr19	10091125	10091169	10091125	+	RAMPAGE_only	43	43	217	8.878870	5.617362	chr19	10091002	10091137	DNA|hAT-Blackjack|MER63B	-	chr19	10086296	10093252	C19orf66|ENST00000585919.5	+	10086296,10086928,10087250,10089656,10089897,10091249,10092069	10086448,10087052,10087300,10089695,10090047,10091630,10093252	0.958525
liver_male_adult_32_years	chr10	132932826	132932854	132932826	-	RAMPAGE_only	2	2	11	0.450081	3.121928	chr10	132932714	132932858	LINE|L1|L1M4	+	chr10	132808391	132942585	CFAP46|NM_001200049.2	-	132808391,132810408,132810949,132812784,132814151,132814576,132814685,132814843,132833357,132834040,132834653,132835303,132836141,132836816,132846056,132846931,132847186,132850243,132851116,132857589,132859070,132860416,132860781,132866024,132867374,132869273,132872675,132876811,132877880,132879425,132880860,132885102,132885820,132892332,132898958,132899534,132908467,132909136,132909918,132912654,132913045,132916548,132918392,132919314,132920058,132922103,132922479,132924695,132926567,132929704,132934751,132936960,132937551,132938588,132940995,132941590,132941979,132942435	132808904,132810489,132811031,132812897,132814254,132814612,132814746,132814914,132833525,132834123,132834775,132835434,132836218,132836914,132846227,132847111,132847321,132850432,132851305,132857788,132859247,132860523,132860982,132866171,132867507,132869372,132872824,132876961,132878087,132879631,132881032,132885286,132885959,132892417,132899121,132899666,132908634,132909244,132910068,132912820,132913258,132916682,132918520,132919442,132920182,132922224,132922708,132924886,132926666,132929804,132934862,132937055,132937675,132938753,132941060,132941722,132942104,132942585	0.818182
liver_male_adult_32_years	chr7	98418163	98418185	98418163	+	High_confidence	3	3	9	0.368248	2.750000	chr7	98417906	98418211	SINE|Alu|AluSx1	-	chr7	98417933	98420565	STRG.62329.1	+	98417933	98420565	0.777778
liver_male_adult_32_years	chr5	126600248	126600249	126600248	+	High_confidence	18	20	21	0.859245	4.070656	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	1.000000
liver_male_adult_32_years	chr2	118143019	118143025	118143019	-	RAMPAGE_only	35	36	55	2.250405	4.853118	chr2	118137000	118143020	LINE|L1|L1PA2	-	chr2	118132127	118186386	THORLNC|ENST00000414886.5	-	118132127,118176764,118183086,118186230	118132372,118176905,118183322,118186386	0.800000
liver_male_adult_32_years	chr2	218313469	218313514	218313504	-	RAMPAGE_only	5	5	17	0.695580	3.969816	chr2	218313410	218313517	LINE|L1|L1MC4a	-	chr2	218305736	218322260	STRG.22280.19	-	218305736,218309976,218321217,218321998	218306548,218310161,218321411,218322260	0.705882
liver_male_adult_32_years	chr1	78143632	78143776	78143632	-	High_confidence	16	16	134	5.482805	4.971705	chr1	78143187	78143687	LINE|L2|L2a	+	chr1	78139892	78143861	STRG.4685.2	-	78139892	78143861	0.977612
liver_male_adult_32_years	chr2	230512977	230513013	230512988	-	High_confidence	3	3	17	0.695580	3.454822	chr2	230512608	230513152	DNA|hAT-Charlie|MER1A	-	chr2	230438667	230513285	STRG.22832.5	-	230438667,230448822,230460922,230464147	230443365,230460579,230462515,230513285	1.000000
liver_male_adult_32_years	chr4	48805141	48805165	48805159	+	High_confidence	70	74	171	6.996713	6.262181	chr4	48805071	48805471	LTR|ERVL-MaLR|MLT1F	+	chr4	48805211	48850036	OCIAD1|ENST00000504654.5	+	48805211,48830576,48832619,48833400,48842635,48848398,48849946	48805330,48830673,48832682,48833481,48842689,48848446,48850036	0.555556
liver_male_adult_32_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	34	34	37	1.513909	4.574054	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103099925	103185647	STRG.82226.9	-	103099925,103101044,103101234,103105705,103106588,103139405,103174857,103181230	103100019,103101102,103101326,103105801,103106706,103139479,103174982,103185647	0.675676
liver_male_adult_32_years	chr17	59892716	59892736	59892716	-	High_confidence	6	8	21	0.859245	4.201841	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.714286
liver_male_adult_32_years	chr13	106626868	106626894	106626868	+	RAMPAGE_only	5	5	19	0.777413	3.366091	chr13	106626722	106627107	LTR|ERVL|LTR33	-	chr13	106617809	106631359	LINC00551|ENST00000607593.1	+	106617809,106626386,106628018,106630786	106618033,106627134,106628141,106631359	0.631579
liver_male_adult_32_years	chr8	143281669	143281687	143281686	-	High_confidence	47	53	120	4.909974	4.979493	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143281069	143281659	STRG.70967.3	-	143281069	143281659	0.708333
liver_male_adult_32_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	13	13	25	1.022911	3.795089	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.800000
liver_male_adult_32_years	chr11	2376165	2376294	2376179	+	High_confidence	37	45	229	9.369867	6.283369	chr11	2376100	2376285	DNA|hAT-Charlie|MER3	-	chr11	2376176	2397419	CD81|NM_001297649.1	+	2376176,2390411,2394094,2394971,2395415,2395868,2396627,2396803	2376357,2390526,2394192,2395046,2395520,2395970,2396714,2397419	0.668122
liver_male_adult_32_years	chr9	73080369	73080370	73080369	-	High_confidence	48	48	48	1.963990	5.035702	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.875000
liver_male_adult_32_years	chr3	195911423	195911424	195911423	-	High_confidence	12	12	15	0.613747	2.835238	chr3	195911141	195911438	SINE|Alu|AluJb	+	chr3	195879121	195911945	TNK2|ENST00000468819.1	-	195879121,195882285,195883156,195884811,195886976,195888425,195911793	195879175,195882328,195883309,195885033,195887047,195888606,195911945	0.666667
liver_male_adult_32_years	chr3	22105678	22105688	22105678	-	High_confidence	4	5	8	0.327332	2.807355	chr3	22105437	22105885	LTR|ERVL|MLT2B1	-	chr3	22100905	22105716	STRG.25106.1	-	22100905	22105716	0.625000
liver_male_adult_32_years	chr4	184343954	184343968	184343967	-	High_confidence	9	12	32	1.309326	4.538910	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184343413	184343952	STRG.41248.1	-	184343413	184343952	0.500000
liver_male_adult_32_years	chr3	186990718	186990738	186990737	+	RAMPAGE_only	50	52	144	5.891969	5.714075	chr3	186990703	186990831	SINE|Alu|AluSq2	+	chr3	186986315	187042998	ST6GAL1|ENST00000448408.5	+	186986315,186996547,187038741,187042653	186986717,186996673,187038873,187042998	0.770833
liver_male_adult_32_years	chr4	189722274	189722284	189722280	-	High_confidence	8	9	19	0.777413	3.836592	chr4	189721949	189722303	LINE|L1|L1M3b	+	chr4	189720019	189722094	STRG.41348.1	-	189720019	189722094	0.526316
liver_male_adult_32_years	chrX	71198191	71198196	71198195	-	High_confidence	4	4	10	0.409165	2.947703	chrX	71198068	71198187	SINE|MIR|MIR3	-	chrX	71183558	71198175	AL590764.1|ENST00000450860.1	-	71183558,71197908	71184017,71198175	0.700000
liver_male_adult_32_years	chr5	41209367	41209368	41209367	-	RAMPAGE_only	5	5	7	0.286415	2.521641	chr5	41205257	41211396	LINE|L1|L1PA5	+	chr5	41199812	41213021	C6|ENST00000417809.1	-	41199812,41201557,41203087,41212911	41199912,41201714,41203250,41213021	1.000000
liver_male_adult_32_years	chr11	47234545	47234556	47234545	+	High_confidence	4	4	11	0.450081	3.095795	chr11	47234450	47234560	LINE|L2|L2c	-	chr11	47234580	47236087	DDB2|ENST00000614394.1	+	47234580,47234756,47235269	47234672,47234934,47236087	0.727273
liver_male_adult_32_years	chr1	43247874	43247891	43247874	-	RAMPAGE_only	4	4	20	0.818329	4.021928	chr1	43247136	43247843	LTR|ERV1|LOR1-int	-	chr1	43194683	43250391	EBNA1BP2|ENST00000474566.1	-	43194683,43206345,43211449,43215265,43250218	43194949,43206392,43211567,43215393,43250391	0.800000
liver_male_adult_32_years	chr2	181954484	181954524	181954491	+	High_confidence	35	35	167	6.833047	5.612662	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.862275
liver_male_adult_32_years	chr3	136625270	136625313	136625270	-	RAMPAGE_only	50	50	101	4.132562	5.590979	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.900990
liver_male_adult_32_years	chr9	92536651	92536704	92536674	-	High_confidence	125	130	488	19.967228	6.491244	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.903689
liver_male_adult_32_years	chr15	37780163	37780175	37780174	-	RAMPAGE_only	3	3	7	0.286415	2.807355	chr15	37779868	37780313	DNA|TcMar-Tigger|Tigger17c	-	chr15	37765744	37785924	STRG.105685.1	-	37765744	37785924	0.714286
liver_male_adult_32_years	chr10	29959134	29959135	29959134	+	High_confidence	105	108	142	5.810136	4.754126	chr10	29958967	29959329	LTR|ERVL-MaLR|MLT1A0	+	chr10	29959138	29969094	STRG.78824.1	+	29959138,29963246,29966307	29960059,29963351,29969094	0.971831
liver_male_adult_32_years	chr5	1106996	1107003	1106996	-	RAMPAGE_only	3	3	8	0.327332	2.750000	chr5	1106701	1107319	LTR|ERV1|MER4CL34	+	chr5	1057527	1112035	STRG.41490.3	-	1057527,1060343,1063843,1064082,1065282,1073632,1074566,1075370,1076137,1076693,1077832,1078700,1079397,1081576,1083744,1085231,1086902,1088305,1088981,1093532,1094153,1103672	1057649,1060451,1063975,1064252,1065478,1073801,1074671,1075490,1076236,1076812,1078007,1078758,1079496,1081744,1083956,1085473,1087033,1088360,1089128,1093655,1094248,1112035	1.000000
liver_male_adult_32_years	chr17	79732962	79733001	79732962	-	High_confidence	24	24	138	5.646470	5.469409	chr17	79732954	79733048	LINE|L1|L1ME4b	+	chr17	79708492	79733247	STRG.117527.1	-	79708492,79732528	79708973,79733247	0.978261
liver_male_adult_32_years	chr20	2301380	2301387	2301382	-	High_confidence	3	5	12	0.490997	2.855389	chr20	2301329	2301448	SINE|MIR|MIR3	+	chr20	2294806	2301435	STRG.124922.1	-	2294806,2297191,2301307	2296494,2297290,2301435	1.000000
liver_male_adult_32_years	chr8	75324300	75324332	75324331	-	High_confidence	17	17	44	1.800324	4.646968	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.545455
liver_male_adult_32_years	chr11	65437508	65437539	65437508	+	RAMPAGE_only	5	5	19	0.777413	3.614369	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65423637	65445540	STRG.86725.10	+	65423637,65423902,65425031,65426060,65433672,65437252	65423860,65424940,65425737,65432625,65437175,65445540	0.947368
liver_male_adult_32_years	chr10	79424624	79424667	79424648	-	RAMPAGE_only	64	66	145	5.932885	6.095689	chr10	79424376	79424743	LINE|L2|L2	+	chr10	79382324	79445626	STRG.80590.3	-	79382324,79394275,79428478,79445194	79386458,79428402,79432758,79445626	0.979310
liver_male_adult_32_years	chr9	129568623	129568671	129568650	-	High_confidence	17	22	76	3.109650	4.686622	chr9	129568535	129568690	SINE|MIR|MIRb	-	chr9	129564326	129568719	STRG.77239.2	-	129564326	129568719	0.947368
liver_male_adult_32_years	chr7	197531	197543	197531	-	High_confidence	4	4	10	0.409165	2.947703	chr7	197499	197615	SINE|MIR|MIRb	+	chr7	194746	197540	STRG.57768.1	-	194746	197540	0.900000
liver_male_adult_32_years	chr16	72064647	72064648	72064647	+	RAMPAGE_only	5	6	6	0.245499	2.584963	chr16	72064268	72064778	LTR|ERV1|LTR10B	+	chr16	72063228	72077246	HPR|ENST00000561690.1	+	72063228,72073891,72074283,72075144,72076302,72076955	72063260,72073977,72074385,72075219,72076350,72077246	0.833333
liver_male_adult_32_years	chr1	67522360	67522366	67522360	+	High_confidence	446	448	815	33.346908	6.813378	chr1	67522395	67522435	LTR|ERVL|LTR47A	+	chr1	67522353	67533919	STRG.4201.3	+	67522353,67529652,67530314,67532105	67522398,67529749,67530378,67533919	0.723926
liver_male_adult_32_years	chr3	69237164	69237183	69237182	-	RAMPAGE_only	3	3	6	0.245499	2.584963	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.833333
liver_male_adult_32_years	chr11	69425670	69425690	69425689	+	High_confidence	4	5	18	0.736496	3.337175	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425689	69429621	AP000439.3|ENST00000545202.1	+	69425689,69427362	69425806,69429621	0.944444
liver_male_adult_32_years	chr16	2759974	2759993	2759974	+	High_confidence	2	4	8	0.327332	2.807355	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	0.875000
liver_male_adult_32_years	chr4	184382248	184382404	184382308	-	High_confidence	148	170	872	35.679146	6.440999	chr4	184382179	184382738	LTR|ERVL|LTR67B	+	chr4	184354400	184382264	STRG.41261.9	-	184354400,184365825,184372338,184376440,184382133	184365646,184371807,184372480,184379129,184382264	0.743119
liver_male_adult_32_years	chr14	94297694	94297717	94297702	-	RAMPAGE_only	7	8	21	0.859245	3.826875	chr14	94297314	94297669	LTR|ERVL-MaLR|THE1A	-	chr14	94293496	94300449	STRG.104400.6	-	94293496	94300449	0.904762
liver_male_adult_32_years	chr5	41208980	41209033	41208980	-	RAMPAGE_only	40	44	121	4.950891	5.474879	chr5	41205257	41211396	LINE|L1|L1PA5	+	chr5	41199812	41213021	C6|ENST00000417809.1	-	41199812,41201557,41203087,41212911	41199912,41201714,41203250,41213021	0.900826
liver_male_adult_32_years	chr7	80374423	80374442	80374423	-	High_confidence	195	230	914	37.397637	6.152409	chr7	80374347	80374986	LINE|RTE-X|L4_B_Mam	+	chr7	80371516	80374439	LOC101927269|NR_110075.1	-	80371516,80372126,80373811,80374340	80371577,80372294,80373990,80374439	0.839168
liver_male_adult_32_years	chr16	70747247	70747255	70747254	-	RAMPAGE_only	9	9	17	0.695580	2.977217	chr16	70746928	70747495	LINE|L1|L1MB7	+	chr16	70731274	70745082	VAC14|ENST00000561879.1	-	70731274,70731494,70744422,70745025	70731359,70731627,70744579,70745082	0.764706
liver_male_adult_32_years	chr8	118383288	118383310	118383309	-	RAMPAGE_only	18	31	85	3.477898	5.831515	chr8	118383163	118383439	LINE|L2|L2b	-	chr8	118377987	118621945	SAMD12|NM_207506.2	-	118377987,118439831,118580714,118621803	118379700,118439961,118580893,118621945	0.670588
liver_male_adult_32_years	chr17	18360420	18360435	18360420	-	RAMPAGE_only	5	7	11	0.450081	2.721928	chr17	18360274	18360589	SINE|Alu|AluJb	+	chr17	18347513	18363346	SHMT1|ENST00000582653.1	-	18347513,18348324,18353671,18355885,18362987	18347656,18348440,18353817,18356000,18363346	0.818182
liver_male_adult_32_years	chr7	134432435	134432460	134432435	-	High_confidence	4	4	16	0.654663	2.739572	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.937500
liver_male_adult_32_years	chr19	44744925	44744941	44744940	+	RAMPAGE_only	3	4	8	0.327332	2.807355	chr19	44744681	44744974	SINE|Alu|AluJo	+	chr19	44737506	44749004	STRG.123748.8	+	44737506,44738525,44741305,44745137,44748652	44737842,44741184,44741640,44748391,44749004	0.875000
liver_male_adult_32_years	chr2	72693342	72693354	72693353	-	RAMPAGE_only	27	29	41	1.677575	4.468112	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.926829
liver_male_adult_32_years	chr11	111775059	111775099	111775062	-	RAMPAGE_only	10	11	49	2.004906	5.288179	chr11	111774970	111775087	SINE|Alu|AluJo	-	chr11	111742056	111778306	STRG.88879.6	-	111742056,111742522,111743375,111747953,111752158,111753442,111754498,111754979,111755294,111759803,111760818,111764804,111765293,111766442,111769358,111774986,111778175	111742144,111742665,111743530,111748014,111752332,111753577,111754569,111755094,111755450,111759951,111761051,111764905,111765942,111769139,111771392,111775113,111778306	0.632653
liver_male_adult_32_years	chr16	29760767	29760814	29760809	+	High_confidence	3	3	19	0.777413	3.614369	chr16	29760474	29761018	LTR|ERVL-MaLR|MLT1G1	+	chr16	29760739	29786620	STRG.111165.1	+	29760739,29779259,29779504,29780103,29784922,29785587	29760949,29779321,29779637,29780637,29785492,29786620	0.842105
liver_male_adult_32_years	chr8	32927958	32927977	32927967	+	RAMPAGE_only	12	12	31	1.268410	4.386569	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.548387
liver_male_adult_32_years	chr17	6853899	6853939	6853928	+	High_confidence	48	55	265	10.842860	6.952863	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6895102	ALOX12P2|ENST00000576636.6	+	6853929,6854213,6892002,6894883,6895095	6854060,6854453,6892075,6895006,6895102	0.528302
liver_male_adult_32_years	chr20	18794077	18794086	18794085	+	High_confidence	9	9	24	0.981995	4.175736	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.958333
liver_male_adult_32_years	chr19	19095836	19095865	19095857	+	High_confidence	7	7	16	0.654663	3.327820	chr19	19095784	19095950	SINE|MIR|MIRb	+	chr19	19095942	19106934	SLC25A42|ENST00000594070.5	+	19095942,19101780,19104912,19105560,19106268	19096205,19101886,19104938,19105727,19106934	1.000000
liver_male_adult_32_years	chr6	11868352	11868357	11868352	-	High_confidence	12	13	23	0.941078	4.088779	chr6	11868053	11868345	DNA|hAT-Tip100|Zaphod	-	chr6	11826378	11868615	STRG.50457.3	-	11826378,11830813,11865597,11868105	11827862,11862845,11865659,11868615	0.565217
liver_male_adult_32_years	chr18	1407215	1407231	1407215	-	High_confidence	5	5	14	0.572830	3.700440	chr18	1407047	1407340	SINE|Alu|AluY	+	chr18	1268310	1407180	LINC00470|ENST00000412816.7	-	1268310,1272441,1275965,1368484,1406986	1269852,1272511,1276077,1368597,1407180	0.571429
liver_male_adult_32_years	chr1	67523013	67523017	67523013	+	High_confidence	3	3	8	0.327332	2.750000	chr1	67522831	67523331	LINE|L1|L1M8	-	chr1	67522353	67532326	LINC01702|ENST00000230113.4	+	67522353,67527377,67529652,67530314,67532105	67522398,67527437,67529749,67530378,67532326	0.875000
liver_male_adult_32_years	chr1	48686291	48686319	48686291	-	High_confidence	11	11	34	1.391159	4.395999	chr1	48686158	48686433	LINE|L2|L2c	+	chr1	48539659	48686317	STRG.2785.1	-	48539659,48587003,48590832,48634492,48653336,48663151,48686232	48539738,48587166,48590985,48634604,48653451,48663241,48686317	0.764706
liver_male_adult_32_years	chr3	101868653	101868665	101868653	+	RAMPAGE_only	4	5	10	0.409165	2.921928	chr3	101868549	101869080	LTR|ERVL-MaLR|MLT1E2	+	chr3	101960385	101996532	AC106712.1|ENST00000498624.1	+	101960385,101994560,101996480	101960731,101994668,101996532	0.500000
liver_male_adult_32_years	chr7	155239724	155239767	155239734	-	RAMPAGE_only	8	8	37	1.513909	3.728972	chr7	155238739	155240897	LTR|ERVK|HERVK9-int	-	chr7	155229519	155254126	STRG.64780.4	-	155229519,155231393,155254015	155231229,155253532,155254126	0.972973
liver_male_adult_32_years	chr3	182895882	182895948	182895947	-	High_confidence	9	10	73	2.986901	4.914489	chr3	182895589	182896029	LTR|ERV1|LTR46	-	chr3	182884440	182895981	STRG.32976.2	-	182884440,182895157	182894950,182895981	0.931507
liver_male_adult_32_years	chr5	67818095	67818128	67818127	-	High_confidence	2	2	9	0.368248	3.000000	chr5	67817944	67823959	LINE|L1|L1PA3	+	chr5	67722874	67818144	STRG.43893.2	-	67722874,67817939	67724088,67818144	0.555556
liver_male_adult_32_years	chr21	38905451	38905458	38905457	-	High_confidence	1155	1220	2526	103.354957	6.178619	chr21	38905254	38905659	LTR|ERV1|LTR9B	-	chr21	38860952	38905478	STRG.129066.5	-	38860952,38901900	38888112,38905478	0.964371
liver_male_adult_32_years	chr1	26944406	26944412	26944411	+	RAMPAGE_only	20	21	55	2.250405	3.739974	chr1	26944211	26944496	SINE|Alu|AluJb	-	chr1	26921725	26946862	NUDC|ENST00000321265.9	+	26921725,26924088,26941456,26941752,26942659,26942870,26945389,26945567,26946129	26921929,26924166,26941660,26941818,26942776,26943065,26945473,26945686,26946862	0.963636
liver_male_adult_32_years	chr8	104277991	104278016	104278015	-	High_confidence	2	2	7	0.286415	2.807355	chr8	104276863	104278195	LTR|ERV1|LOR1-int	-	chr8	104271577	104278145	STRG.69202.2	-	104271577	104278145	1.000000
liver_male_adult_32_years	chr5	34244736	34244816	34244753	-	High_confidence	6	6	47	1.923073	4.868107	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.553191
liver_male_adult_32_years	chr5	126370303	126370309	126370303	-	High_confidence	10	10	17	0.695580	3.572469	chr5	126370279	126370453	SINE|tRNA-RTE|MamSINE1	+	chr5	126369870	126370304	STRG.47057.1	-	126369870	126370304	0.529412
liver_male_adult_32_years	chr12	98494068	98494069	98494068	-	High_confidence	5	5	7	0.286415	2.807355	chr12	98494008	98494184	LTR|ERV1|LTR54	+	chr12	98486972	98494163	STRG.95007.1	-	98486972,98490993,98493591	98487188,98493484,98494163	1.000000
liver_male_adult_32_years	chr6	107812536	107812565	107812547	+	High_confidence	7	7	30	1.227494	4.593069	chr6	107812432	107812866	LTR|ERVL|MLT2B4	+	chr6	107812521	107813100	STRG.54562.1	+	107812521	107813100	0.733333
liver_male_adult_32_years	chr15	50182075	50182120	50182119	-	High_confidence	33	38	179	7.324045	5.912062	chr15	50181935	50182071	SINE|MIR|MIRb	-	chr15	50047391	50182817	STRG.106320.6	-	50047391,50074126,50106938,50119122,50144441,50145442,50147509,50156497,50157336,50181985	50047464,50074185,50107008,50122925,50144477,50146351,50147670,50156514,50181737,50182817	0.776536
liver_male_adult_32_years	chr9	89479889	89479890	89479889	-	High_confidence	30	30	32	1.309326	3.961406	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89402924	89479890	SEMA4D|ENST00000540475.5	-	89402924,89405350,89455887,89479571	89403016,89405699,89455953,89479890	0.875000
liver_male_adult_32_years	chr11	114295255	114295370	114295369	+	High_confidence	21	22	107	4.378060	5.749364	chr11	114294850	114295386	LTR|ERV1|LTR35A	-	chr11	114295812	114312516	NNMT|NM_006169.2	+	114295812,114297950,114312044	114296710,114298158,114312516	0.785047
liver_male_adult_32_years	chr12	9144954	9144962	9144961	+	RAMPAGE_only	7	7	13	0.531914	3.392747	chr12	9144517	9144991	LTR|ERV1|LTR19A	-	chr12	9127782	9195203	STRG.90884.5	+	9127782,9147462	9145073,9195203	0.846154
liver_male_adult_32_years	chr5	112109370	112109383	112109382	-	High_confidence	7	9	27	1.104744	4.106377	chr5	112109260	112109715	LTR|ERVL|LTR16A1	+	chr5	112105835	112109519	STRG.46063.1	-	112105835	112109519	0.962963
liver_male_adult_32_years	chr10	133522168	133522169	133522168	-	RAMPAGE_only	8	8	11	0.450081	3.321928	chr10	133522039	133522322	SINE|Alu|AluY	-	chr10	133480392	133527513	STRG.83240.1	-	133480392,133514219,133519670,133523609	133509289,133514328,133519850,133527513	0.727273
liver_male_adult_32_years	chr6	160101201	160101208	160101207	+	RAMPAGE_only	28	41	66	2.700486	5.243457	chr6	160101091	160101276	LINE|L1|L1MEd	+	chr6	160061630	160106507	IGF2R|ENST00000650503.1	+	160061630,160061752,160062531,160063414,160064400,160064803,160068248,160069867,160071909,160072764,160073212,160073756,160075846,160078200,160079579,160080128,160083949,160084994,160088032,160089915,160096438,160102518,160103745,160104673	160061646,160061928,160062619,160063630,160064531,160064901,160068385,160070058,160072036,160072884,160073469,160073975,160075996,160078362,160079787,160080275,160084184,160085131,160089253,160090103,160096625,160102671,160103815,160106507	0.984848
liver_male_adult_32_years	chrX	106901936	106901937	106901936	-	High_confidence	7	7	10	0.409165	3.169925	chrX	106901833	106901957	SINE|MIR|MIRc	+	chrX	106899609	106902525	STRG.135917.1	-	106899609,106901473,106902139	106900908,106901538,106902525	0.800000
liver_male_adult_32_years	chr11	47214449	47214479	47214478	+	High_confidence	9	12	68	2.782319	4.729883	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214464	47216873	DDB2|ENST00000622878.4	+	47214464,47215070,47216335,47216857	47214674,47215263,47216472,47216873	0.838235
liver_male_adult_32_years	chr1	43250327	43250328	43250327	-	High_confidence	8	8	8	0.327332	3.000000	chr1	43249744	43250419	LTR|ERV1|LOR1-int	-	chr1	43194683	43250391	EBNA1BP2|ENST00000474566.1	-	43194683,43206345,43211449,43215265,43250218	43194949,43206392,43211567,43215393,43250391	0.500000
liver_male_adult_32_years	chr11	61488885	61488899	61488885	+	High_confidence	11	11	26	1.063828	3.303509	chr11	61488729	61489022	LINE|L2|L2b	-	chr11	61488841	61490931	PPP1R32|ENST00000366212.8	+	61488841,61489781,61490500,61490813	61488962,61489946,61490584,61490931	0.846154
liver_male_adult_32_years	chr19	9700673	9700674	9700673	-	High_confidence	10	11	12	0.490997	3.418296	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	1.000000
liver_male_adult_32_years	chr14	37469230	37469259	37469249	-	High_confidence	2	2	8	0.327332	2.807355	chr14	37469115	37469531	LTR|ERVL-MaLR|MSTA	-	chr14	37464762	37468495	STRG.100980.1	-	37464762	37468495	0.625000
liver_male_adult_32_years	chr16	76532316	76532327	76532326	-	High_confidence	23	25	49	2.004906	3.329535	chr16	76532240	76532329	SINE|MIR|MIRc	+	chr16	76525894	76532348	STRG.112396.2	-	76525894	76532348	0.959184
liver_male_adult_32_years	chr19	6702632	6702639	6702632	-	RAMPAGE_only	4	4	8	0.327332	2.521641	chr19	6702615	6702750	SINE|Alu|AluSz	+	chr19	6696613	6697715	C3|ENST00000594005.1	-	6696613,6697343	6696659,6697715	0.500000
liver_male_adult_32_years	chr9	62897430	62897431	62897430	+	High_confidence	11	11	14	0.572830	3.392747	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.785714
liver_male_adult_32_years	chr7	17487031	17487048	17487047	-	RAMPAGE_only	5	5	13	0.531914	3.418296	chr7	17486877	17487036	DNA|hAT-Charlie|Charlie4z	-	chr7	17405478	17524175	AC019117.1|ENST00000636929.1	-	17405478,17456681,17457458,17459724,17460481,17463097,17463399,17465169,17482526,17483405,17524096	17405628,17456762,17457589,17459919,17460553,17463266,17463542,17465226,17482782,17483534,17524175	0.846154
liver_male_adult_32_years	chr3	52798216	52798217	52798216	+	RAMPAGE_only	7	8	11	0.450081	3.321928	chr3	52798172	52798245	SINE|MIR|MIRc	-	chr3	52794797	52799876	STRG.27056.14	+	52794797,52795602,52796480,52796738,52797104,52797816,52799371,52799752	52794896,52795623,52796647,52796843,52797267,52799091,52799488,52799876	0.909091
liver_male_adult_32_years	chr16	8740142	8740157	8740156	-	High_confidence	4	4	11	0.450081	3.321928	chr16	8740029	8740202	SINE|MIR|MIRb	-	chr16	8735231	8740954	STRG.109954.3	-	8735231,8738360	8737466,8740954	0.818182
liver_male_adult_32_years	chr3	154140252	154140308	154140252	+	RAMPAGE_only	37	39	74	3.027817	5.763243	chr3	154140194	154140347	SINE|MIR|MIRb	-	chr3	154121415	154256548	STRG.31687.5	+	154121415,154121941,154124409,154129573,154149388,154152771,154187684,154191288,154194643,154217868,154240369	154121519,154123075,154124449,154129719,154149445,154180834,154187837,154191418,154194718,154226010,154256548	0.662162
liver_male_adult_32_years	chr10	30001063	30001118	30001070	-	High_confidence	95	176	398	16.284748	6.495438	chr10	30000830	30001339	LTR|ERVL|LTR40a	-	chr10	29987885	30001074	STRG.78826.2	-	29987885	30001074	0.992462
liver_male_adult_32_years	chr22	30081139	30081230	30081228	+	High_confidence	18	27	74	3.027817	4.837152	chr22	30081228	30081343	LINE|L2|L2c	+	chr22	30081010	30177073	HORMAD2|ENST00000403975.1	+	30081010,30093915,30098851,30103436,30104400,30111795,30112495,30118979,30121631,30121963,30176062	30081258,30094003,30098993,30103500,30104437,30111816,30112522,30119047,30121789,30122214,30177073	0.662162
liver_male_adult_32_years	chr1	193473057	193473082	193473081	+	High_confidence	13	24	42	1.718491	4.421963	chr1	193473114	193473705	LTR|ERVL|MLT2F	+	chr1	193472943	193904649	STRG.9581.2	+	193472943,193673209,193886320,193899286	193473376,193673256,193886417,193904649	0.642857
liver_male_adult_32_years	chrX	48589995	48590030	48590029	+	High_confidence	6	6	24	0.981995	4.136842	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48590041	48599682	STRG.133528.5	+	48590041,48597957,48598716,48599352,48599586	48590287,48598037,48598957,48599462,48599682	0.708333
liver_male_adult_32_years	chr4	782510	782578	782577	+	High_confidence	3	3	16	0.654663	3.875000	chr4	782341	782655	LINE|L2|L2a	+	chr4	782435	796636	STRG.33948.1	+	782435,787962,795279,796220	787866,789357,796106,796636	1.000000
liver_male_adult_32_years	chr22	26525132	26525133	26525132	+	High_confidence	7	7	9	0.368248	2.750000	chr22	26524762	26525224	LTR|ERVL|MER77	+	chr22	26525095	26532656	STRG.130168.3	+	26525095	26532656	0.888889
liver_male_adult_32_years	chrX	48683361	48683363	48683361	+	High_confidence	21	40	40	1.636658	3.872574	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
liver_male_adult_32_years	chr19	54616967	54616968	54616967	+	High_confidence	7	9	11	0.450081	3.121928	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54616929	54637556	LILRB1|NM_006669.6	+	54616929,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637556	0.909091
liver_male_adult_32_years	chr1	185881152	185881170	185881166	+	RAMPAGE_only	2	2	8	0.327332	2.807355	chr1	185880911	185881675	LTR|ERV1|LTR1D	-	chr1	185734550	186190953	HMCN1|NM_031935.2	+	185734550,185846025,185864469,185865740,185909336,185911673,185922378,185923389,185925046,185928545,185933548,185962517,185963767,185965801,185970334,185977786,185980977,185982261,185984168,185987431,185989487,185990274,185993181,185994814,185997428,186000044,186001297,186001593,186003717,186007127,186015158,186015957,186016962,186018182,186019540,186023029,186037933,186038828,186039727,186041012,186045687,186048742,186052951,186053824,186055392,186057233,186061850,186062513,186065237,186067833,186069662,186070611,186074740,186076427,186078106,186081206,186082864,186086245,186087216,186087442,186087931,186088144,186088605,186090757,186093133,186093485,186094275,186095242,186103471,186106883,186108460,186112811,186113978,186114818,186115257,186116993,186117458,186119190,186119744,186120010,186122950,186125603,186128077,186129965,186130506,186132327,186136667,186137497,186137801,186144172,186144532,186145402,186145752,186151199,186151605,186152749,186153749,186165110,186166183,186166807,186171336,186172005,186174513,186178415,186182167,186187882,186189511	185735047,185846096,185864628,185865863,185909508,185911780,185922499,185923653,185925191,185928667,185933824,185962659,185963895,185965915,185970493,185977981,185981073,185982389,185984313,185987544,185989647,185990443,185993309,185995087,185997524,186000239,186001428,186001741,186003844,186007282,186015437,186016239,186017071,186018352,186019695,186023153,186038035,186039005,186039879,186041136,186045863,186048839,186053074,186053986,186055674,186057401,186061964,186062600,186065429,186068007,186069776,186070757,186074891,186076622,186078220,186081394,186082961,186086407,186087330,186087645,186088013,186088276,186088755,186090917,186093258,186093669,186094373,186095521,186103668,186106965,186108597,186112953,186114123,186114946,186115414,186117115,186117623,186119298,186119882,186120145,186123220,186125794,186128291,186130100,186130697,186132409,186136937,186137668,186137972,186144343,186144703,186145573,186145923,186151349,186151743,186152871,186153987,186165173,186166303,186166942,186171450,186172131,186174642,186178766,186182287,186188009,186190953	0.750000
liver_male_adult_32_years	chr7	38954164	38954175	38954164	-	RAMPAGE_only	7	7	25	1.022911	4.349649	chr7	38954125	38954197	DNA|hAT-Tip100|MER91C	-	chr7	38817802	38929560	VPS41|ENST00000418457.6	-	38817802,38821202,38830253,38862544,38869145,38898090,38929471	38817882,38821265,38830328,38862622,38869253,38898129,38929560	0.520000
liver_male_adult_32_years	chr3	187024852	187024855	187024852	+	High_confidence	3	3	6	0.245499	2.584963	chr3	187024583	187024927	LINE|L1|L1MC5a	+	chr3	187025478	187043084	ST6GAL1|ENST00000423451.5	+	187025478,187038741,187042653	187025517,187038873,187043084	0.500000
liver_male_adult_32_years	chr13	50083119	50083120	50083119	+	High_confidence	43	48	61	2.495904	4.625326	chr13	50083020	50083238	SINE|MIR|MIRb	-	chr13	50082170	50107218	DLEU1|ENST00000469754.2	+	50082170,50083141,50104703	50082557,50083194,50107218	0.901639
liver_male_adult_32_years	chr10	72355126	72355151	72355145	-	High_confidence	18	18	56	2.291321	4.601838	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.964286
liver_male_adult_32_years	chr4	69525719	69525743	69525719	-	High_confidence	2	2	8	0.327332	2.750000	chr4	69525719	69525768	LINE|L2|L2c	-	chr4	69480164	69526014	UGT2B4|NM_001297616.1	-	69480164,69485207,69486608,69489438,69493692,69495140,69525686	69480910,69485427,69486696,69489570,69493841,69495410,69526014	0.875000
liver_male_adult_32_years	chr4	155495874	155495894	155495893	+	High_confidence	10	12	36	1.472992	4.683293	chr4	155495502	155496083	LINE|L2|L2	-	chr4	155495911	155497882	STRG.40387.1	+	155495911	155497882	0.888889
liver_male_adult_32_years	chr12	58781708	58781719	58781718	-	High_confidence	45	57	99	4.050729	5.749465	chr12	58781360	58781953	LTR|ERVL|MER70B	-	chr12	58766384	58781743	STRG.93246.3	-	58766384	58781743	0.555556
liver_male_adult_32_years	chr1	75375985	75376018	75375989	-	RAMPAGE_only	3	3	9	0.368248	2.750000	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.777778
liver_male_adult_32_years	chr6	63516425	63516479	63516442	+	RAMPAGE_only	42	54	175	7.160379	5.754548	chr6	63516454	63516579	SINE|MIR|MIR	+	chr6	63521745	63583377	PTP4A1|ENST00000648894.1	+	63521745,63527818,63532336,63576435,63578436,63578897,63579256,63580056	63521826,63528084,63532530,63576985,63578529,63579028,63579331,63583377	0.640000
liver_male_adult_32_years	chr12	53324700	53324730	53324729	-	High_confidence	4	4	15	0.613747	3.378783	chr12	53324657	53324805	LINE|L2|L2b	+	chr12	53307459	53324758	AAAS|ENST00000550286.5	-	53307459,53307844,53308051,53308281,53308434,53308724,53308959,53309156,53309600,53314297,53314750,53315093,53315726,53320564,53324561	53307713,53307929,53308133,53308349,53308528,53308815,53309020,53309281,53309721,53314441,53314849,53315140,53315782,53320692,53324758	0.600000
liver_male_adult_32_years	chr17	6708737	6708740	6708737	-	RAMPAGE_only	6	6	11	0.450081	2.721928	chr17	6708429	6708971	DNA|TcMar-Tigger|MER6A	-	chr17	6703880	6713359	STRG.113371.14	-	6703880,6706641,6707027	6704056,6706778,6713359	0.909091
liver_male_adult_32_years	chr22	50541353	50541389	50541388	+	RAMPAGE_only	4	4	9	0.368248	2.725481	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	0.666667
liver_male_adult_32_years	chr10	14557129	14557145	14557144	-	High_confidence	5	5	15	0.613747	2.789898	chr10	14556836	14557307	LINE|L2|L2c	+	chr10	14521136	14556414	FAM107B|ENST00000492700.5	-	14521136,14521868,14530331,14556361	14521306,14522019,14530515,14556414	0.933333
liver_male_adult_32_years	chr5	57650652	57650678	57650677	+	High_confidence	45	53	308	12.602267	6.797314	chr5	57650666	57651278	LINE|L1|L1PB4	-	chr5	57650659	57670989	LOC101928505|NR_104668.1	+	57650659,57665250,57669689	57650759,57665512,57670989	0.516234
liver_male_adult_32_years	chr15	58431144	58431150	58431149	+	High_confidence	20	23	36	1.472992	4.836592	chr15	58431102	58431256	LINE|L2|L2a	+	chr15	58431797	58569843	LIPC|ENST00000299022.9	+	58431797,58538332,58541784,58542533,58545741,58548329,58560863,58563504,58568715	58432120,58538517,58541967,58542651,58545975,58548572,58560981,58563723,58569843	0.722222
liver_male_adult_32_years	chr17	7115670	7115696	7115670	-	High_confidence	6	6	15	0.613747	3.324863	chr17	7115576	7115885	SINE|Alu|AluSq2	+	chr17	7107838	7115700	ASGR2|ENST00000574868.1	-	7107838,7108461,7108771,7114116,7114614,7115053,7115640	7107907,7108557,7108888,7114310,7114811,7115522,7115700	0.866667
liver_male_adult_32_years	chr1	207090098	207090112	207090098	+	High_confidence	3	3	10	0.409165	2.947703	chr1	207089989	207090168	SINE|Alu|AluYm1	+	chr1	207089282	207099983	STRG.10328.12	+	207089282,207089481,207090307,207091643,207098149,207099788	207089361,207089589,207090481,207096615,207098264,207099983	0.900000
liver_male_adult_32_years	chr16	80991894	80991935	80991934	-	High_confidence	4	4	15	0.613747	3.589898	chr16	80991652	80991991	LINE|L1|L1MC3	+	chr16	80975801	80991955	CMC2|ENST00000566231.5	-	80975801,80981805,80991753	80976179,80981877,80991955	0.800000
liver_male_adult_32_years	chr10	68307080	68307128	68307107	-	High_confidence	28	30	138	5.646470	3.698285	chr10	68307029	68307329	SINE|Alu|AluSx1	-	chr10	68287026	68306879	PBLD|ENST00000277795.8	-	68287026,68292009,68292128,68296885,68306760	68289019,68292039,68292238,68296985,68306879	0.978261
liver_male_adult_32_years	chr11	123061256	123061257	123061256	-	High_confidence	6	7	8	0.327332	2.500000	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.875000
liver_male_adult_32_years	chr12	126936642	126936650	126936649	-	High_confidence	6	6	10	0.409165	2.947703	chr12	126936467	126937286	LTR|ERV1|LTR28B	-	chr12	126922733	126936445	STRG.96436.1	-	126922733,126923029,126936419	126922937,126923205,126936445	0.900000
liver_male_adult_32_years	chr2	200588166	200588177	200588176	+	High_confidence	11	11	33	1.350243	4.453881	chr2	200587906	200588390	LINE|L2|L2a	-	chr2	200588173	200603297	AOX1|ENST00000454629.1	+	200588173,200593145,200595271,200597396,200599619,200602283,200603266	200588270,200593203,200595368,200597505,200599746,200602345,200603297	0.666667
liver_male_adult_32_years	chr1	149641470	149641471	149641470	-	High_confidence	6	6	6	0.245499	2.584963	chr1	149641423	149641634	LTR|ERV1|MER90a	+	chr1	149636372	149641493	STRG.7377.1	-	149636372	149641493	1.000000
liver_male_adult_32_years	chr1	37893871	37893872	37893871	-	RAMPAGE_only	7	8	8	0.327332	2.521641	chr1	37893462	37893926	LINE|L2|L2c	+	chr1	37885508	37888344	INPP5B|ENST00000467066.1	-	37885508,37886887,37887350,37888242	37885825,37887004,37887465,37888344	0.875000
liver_male_adult_32_years	chr1	222892321	222892330	222892326	+	RAMPAGE_only	3	3	9	0.368248	2.750000	chr1	222892051	222892649	DNA|hAT?|MER99	-	chr1	222875723	223005995	STRG.11033.1	+	222875723,222928429,222942806,222983079,222990624,222991519,222992012,222994884,223002384	222899865,222928570,222943332,222983109,222990748,222991647,222992110,222994982,223005995	0.666667
liver_male_adult_32_years	chr10	65570512	65570536	65570519	+	High_confidence	24	30	98	4.009812	5.547800	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570521	65768835	STRG.79844.1	+	65570521,65571424,65572934,65585484,65615635,65689502,65768392	65570759,65571579,65573056,65585802,65615761,65689611,65768835	0.653061
liver_male_adult_32_years	chr10	35449700	35449732	35449714	+	RAMPAGE_only	6	6	21	0.859245	3.821928	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.666667
liver_male_adult_32_years	chr8	102929828	102929829	102929828	+	High_confidence	4	4	6	0.245499	2.584963	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.666667
liver_male_adult_32_years	chr8	124619511	124619517	124619513	-	High_confidence	41	81	125	5.114556	4.487906	chr8	124619245	124619557	LINE|L2|L2c	+	chr8	124589664	124619479	MTSS1|ENST00000519671.1	-	124589664,124591150,124619266	124589711,124591235,124619479	0.640000
liver_male_adult_32_years	chr20	1150544	1150545	1150544	+	RAMPAGE_only	18	20	24	0.981995	3.936180	chr20	1150537	1151024	LINE|L1|L1M5	-	chr20	1134839	1168378	PSMF1|ENST00000484891.1	+	1134839,1163129,1164317,1165028	1135306,1163183,1164476,1168378	0.958333
liver_male_adult_32_years	chr18	54234937	54234972	54234971	-	RAMPAGE_only	13	13	67	2.741402	5.207734	chr18	54234703	54235088	LTR|ERVL|LTR79	-	chr18	54151600	54224788	MBD2|ENST00000256429.7	-	54151600,54159764,54164522,54166075,54188873,54204997,54224017	54155311,54159903,54164700,54166166,54189011,54205157,54224788	0.850746
liver_male_adult_32_years	chr5	95852825	95852837	95852825	+	RAMPAGE_only	2	2	10	0.409165	2.921928	chr5	95852776	95852890	LINE|L1|L1MEh	+	chr5	95844033	95860133	STRG.45350.6	+	95844033,95858414	95857864,95860133	1.000000
liver_male_adult_32_years	chr21	29077476	29077501	29077486	+	High_confidence	24	24	78	3.191483	4.931482	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.628205
liver_male_adult_32_years	chr12	91179462	91179526	91179525	-	High_confidence	121	185	898	36.742974	6.965512	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91145258	91179582	DCN|ENST00000393155.5	-	91145258,91151653,91153095,91157074,91158295,91164604,91178341,91179361	91146252,91151792,91153189,91157188,91158509,91164717,91178585,91179582	0.991091
liver_male_adult_32_years	chr9	113395431	113395432	113395431	-	RAMPAGE_only	11	11	11	0.450081	3.095795	chr9	113395423	113395553	DNA|TcMar-Tigger|Tigger19b	+	chr9	113392131	113397402	ALAD|ENST00000452726.1	-	113392131,113393446,113397045	113392169,113393634,113397402	0.818182
liver_male_adult_32_years	chr1	119379275	119379318	119379275	-	High_confidence	510	525	1232	50.409068	6.926755	chr1	119378945	119379469	LTR|ERVL|MER68	-	chr1	119251306	119379296	STRG.6601.7	-	119251306,119326962,119332887,119335652,119344126,119344356,119348515,119356402,119360720,119364162	119294167,119327139,119332962,119343352,119344220,119344445,119348555,119356553,119360862,119379296	0.943182
liver_male_adult_32_years	chr13	99496749	99496756	99496755	-	High_confidence	8	8	15	0.613747	3.323231	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.600000
liver_male_adult_32_years	chr9	114318404	114318405	114318404	-	RAMPAGE_only	22	25	29	1.186577	4.178439	chr9	114317930	114318531	DNA|hAT-Tip100|Zaphod	-	chr9	114294325	114319654	STRG.76807.1	-	114294325,114318193,114319102	114309832,114318330,114319654	0.827586
liver_male_adult_32_years	chr1	148900909	148900917	148900909	+	RAMPAGE_only	5	6	11	0.450081	3.459432	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148889783	148932725	PDE4DIP|ENST00000612094.1	+	148889783,148929196,148932112	148889894,148931923,148932725	0.545455
liver_male_adult_32_years	chr5	176216403	176216411	176216403	-	RAMPAGE_only	2	3	7	0.286415	2.807355	chr5	176216196	176218144	LTR|ERV1|MER83A-int	+	chr5	176174514	176205013	STRG.49393.1	-	176174514,176175833,176176281,176176758,176183230,176185100,176186161,176187402,176204748	176175212,176175901,176176450,176182763,176183301,176185342,176186380,176187596,176205013	0.571429
liver_male_adult_32_years	chr7	6590246	6590279	6590246	+	High_confidence	5	5	23	0.941078	4.186704	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	STRG.58254.2	+	6590143,6591645,6594434,6599828,6602100,6607536,6607959	6590475,6591867,6594600,6600356,6602752,6607839,6608724	0.956522
liver_male_adult_32_years	chr1	212237683	212237721	212237683	-	High_confidence	25	25	71	2.905068	5.494405	chr1	212237552	212237916	LTR|ERVL-MaLR|MSTC	-	chr1	212225315	212237712	STRG.10491.1	-	212225315,212230202,212234801,212237566	212225513,212230259,212234919,212237712	0.647887
liver_male_adult_32_years	chrX	9164600	9164654	9164627	-	High_confidence	35	35	146	5.973802	4.613006	chrX	9164452	9164853	LTR|ERVL-MaLR|MSTA	-	chrX	9025104	9164639	FAM9B|ENST00000461107.5	-	9025104,9025483,9027867,9029306,9030260,9032340,9082578,9162796,9164532	9025377,9025583,9027966,9029418,9032161,9033075,9082735,9162904,9164639	0.856164
liver_male_adult_32_years	chr1	23417911	23417912	23417911	-	RAMPAGE_only	6	6	8	0.327332	2.521641	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.875000
liver_male_adult_32_years	chr3	194486571	194486610	194486571	-	High_confidence	2	2	15	0.613747	3.506891	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.866667
liver_male_adult_32_years	chr10	99653906	99653907	99653906	-	RAMPAGE_only	12	12	12	0.490997	3.188722	chr10	99653901	99654098	LINE|L2|L2c	-	chr10	99652870	99654945	STRG.81971.1	-	99652870	99654945	0.833333
liver_male_adult_32_years	chr13	106562018	106562027	106562018	-	High_confidence	5	5	11	0.450081	3.121928	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.818182
liver_male_adult_32_years	chr4	183618735	183618777	183618735	-	High_confidence	10	12	37	1.513909	4.350209	chr4	183618405	183618902	LTR|ERVL|MLT2C2	-	chr4	183585244	183618830	STRG.41078.1	-	183585244,183616823	183616688,183618830	0.783784
liver_male_adult_32_years	chr5	151251186	151251187	151251186	-	High_confidence	26	26	29	1.186577	3.708048	chr5	151251001	151251626	LTR|ERV1|MER51A	-	chr5	151250823	151251177	STRG.48580.1	-	151250823	151251177	0.724138
liver_male_adult_32_years	chr19	4529272	4529314	4529313	-	RAMPAGE_only	4	6	15	0.613747	3.521641	chr19	4529288	4529435	SINE|MIR|MIRb	+	chr19	4528426	4540067	AC011498.4|ENST00000586020.1	-	4528426,4531626,4534014,4539981	4529866,4531822,4534095,4540067	0.866667
liver_male_adult_32_years	chr8	17891413	17891446	17891445	-	High_confidence	18	18	43	1.759407	5.007660	chr8	17891176	17891626	LTR|ERVL-MaLR|MLT1C	-	chr8	17864583	17891809	FGL1|ENST00000518650.5	-	17864583,17868547,17868915,17874018,17874361,17881998,17885491,17891680	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891809	0.720930
liver_male_adult_32_years	chr20	62776856	62776945	62776856	-	High_confidence	35	57	137	5.605554	6.170275	chr20	62776675	62776888	LTR|ERVL|LTR16A	-	chr20	62767505	62776962	STRG.127555.1	-	62767505,62767694,62775314	62767670,62774569,62776962	0.978102
liver_male_adult_32_years	chr9	129489063	129489126	129489125	+	High_confidence	34	42	127	5.196389	6.310425	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.700787
liver_male_adult_32_years	chr21	31658131	31658176	31658142	-	RAMPAGE_only	25	27	94	3.846146	4.965087	chr21	31658107	31658234	LINE|CR1|L3	-	chr21	31653592	31659500	AP000253.1|ENST00000449339.1	-	31653592,31657933,31659396	31655427,31658227,31659500	0.840426
liver_male_adult_32_years	chr21	22062635	22062648	22062638	-	High_confidence	271	285	869	35.556396	6.578841	chr21	22062350	22062974	LINE|L2|L2a	+	chr21	22003236	22062948	STRG.127950.2	-	22003236,22042192,22062008	22041435,22043087,22062948	0.979287
liver_male_adult_32_years	chr14	104766951	104766953	104766952	-	High_confidence	152	199	234	9.574450	6.226687	chr14	104766824	104767423	LTR|ERV1|LTR71B	-	chr14	104744777	104766972	STRG.104702.4	-	104744777,104754576	104754471,104766972	0.982906
liver_male_adult_32_years	chr15	92914930	92914974	92914930	+	High_confidence	5	5	19	0.777413	3.747413	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.789474
liver_male_adult_32_years	chr4	145340443	145340467	145340466	-	High_confidence	2	2	7	0.286415	2.584963	chr4	145340419	145340735	LTR|ERV1|MER61B	+	chr4	145335262	145340421	LINC02266|ENST00000610239.1	-	145335262,145337200,145338964,145340360	145336119,145337313,145339084,145340421	0.571429
liver_male_adult_32_years	chr11	1664024	1664080	1664040	+	RAMPAGE_only	8	11	53	2.168572	5.515563	chr11	1664080	1664495	LINE|L1|L1MB3	+	chr11	1665596	1670575	STRG.83461.5	+	1665596,1666434,1667962	1665764,1667748,1670575	0.811321
liver_male_adult_32_years	chr9	134373065	134373106	134373102	+	RAMPAGE_only	59	71	195	7.978708	6.180182	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134371970	134440585	RXRA|ENST00000356384.4	+	134371970,134374006,134401395,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134372139,134374130,134401540,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440585	0.820513
liver_male_adult_32_years	chr2	230513289	230513305	230513304	-	High_confidence	103	112	295	12.070353	6.407403	chr2	230513152	230513502	LTR|ERV1|LTR44	-	chr2	230438667	230513285	STRG.22832.5	-	230438667,230448822,230460922,230464147	230443365,230460579,230462515,230513285	0.983051
liver_male_adult_32_years	chr5	88190252	88190289	88190252	-	RAMPAGE_only	4	7	24	0.981995	4.084963	chr5	88189235	88190729	LTR|ERV1|HERVE-int	-	chr5	88178656	88268819	STRG.44736.5	-	88178656,88196375,88197668,88198975,88206438,88207028,88220562,88225768,88228444,88240812,88268720	88190261,88196488,88197765,88205954,88206499,88207142,88220719,88225866,88228528,88240916,88268819	1.000000
liver_male_adult_32_years	chr16	83946798	83946799	83946798	-	RAMPAGE_only	4	4	6	0.245499	2.584963	chr16	83946774	83946987	SINE|MIR|MIRc	+	chr16	83931384	83948058	STRG.112752.1	-	83931384	83948058	1.000000
liver_male_adult_32_years	chr11	77175289	77175303	77175302	+	High_confidence	5	5	11	0.450081	2.921928	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.909091
liver_male_adult_32_years	chr4	69738976	69739004	69738985	-	RAMPAGE_only	9	9	31	1.268410	4.481728	chr4	69738649	69740208	LTR|ERVL-MaLR|THE1D-int	-	chr4	69721161	69760712	SULT1B1|ENST00000310613.7	-	69721161,69730500,69733412,69734137,69749720,69754669,69755069,69760458	69727200,69730681,69733507,69734264,69749818,69754798,69755261,69760712	0.935484
liver_male_adult_32_years	chr14	106844740	106844746	106844745	-	High_confidence	5	5	11	0.450081	2.721928	chr14	106836775	106845293	LTR|ERV1|HERV3-int	-	chr14	106842893	106844615	STRG.104641.1	-	106842893	106844615	0.818182
liver_male_adult_32_years	chr2	43494108	43494133	43494127	-	RAMPAGE_only	4	4	16	0.654663	3.750000	chr2	43494020	43494190	LTR|ERVL|LTR16D	+	chr2	43230851	43508753	STRG.14591.7	-	43230851,43232712,43279764,43286907,43291695,43292103,43292833,43320445,43344121,43397970,43428099,43430212,43485233,43486436,43487572,43505621,43508647	43231343,43232882,43279896,43287061,43291768,43292222,43293213,43320540,43344237,43398139,43428231,43430302,43485325,43487528,43498955,43505735,43508753	1.000000
liver_male_adult_32_years	chr22	26525082	26525084	26525082	+	High_confidence	120	174	188	7.692293	5.660768	chr22	26524762	26525224	LTR|ERVL|MER77	+	chr22	26525095	26532656	STRG.130168.3	+	26525095	26532656	0.978723
liver_male_adult_32_years	chr10	92111686	92111691	92111690	-	High_confidence	107	134	251	10.270029	3.904688	chr10	92111553	92111835	LINE|L1|L1MB7	+	chr10	92049630	92111679	STRG.81492.5	-	92049630,92081319,92091829,92111075,92111471	92052439,92081501,92091944,92111194,92111679	0.968127
liver_male_adult_32_years	chr20	50306774	50306814	50306807	-	High_confidence	7	7	35	1.432076	3.797083	chr20	50306648	50306881	LINE|L2|L2c	+	chr20	50301692	50306825	STRG.126926.1	-	50301692,50306743	50302916,50306825	0.857143
liver_male_adult_32_years	chr1	196658592	196658618	196658617	+	RAMPAGE_only	11	11	19	0.777413	4.037401	chr1	196658407	196658724	SINE|Alu|AluY	-	chr1	196652055	196832189	STRG.9888.1	+	196652055,196672977,196673856,196675988,196677475,196679622,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196741874,196743451,196745816,196747110,196830529,196831796	196652175,196673163,196673962,196676065,196677667,196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196740792,196742051,196743628,196745999,196747296,196830682,196832189	0.947368
liver_male_adult_32_years	chr12	9114076	9114089	9114076	-	RAMPAGE_only	6	6	19	0.777413	3.836592	chr12	9113988	9114066	SINE|MIR|MIRc	-	chr12	9067707	9115962	A2M|NM_000014.4	-	9067707,9068182,9068739,9069744,9070487,9072358,9072652,9074559,9076755,9077345,9077700,9079243,9079638,9080093,9089199,9089901,9090355,9091200,9093464,9094972,9095538,9098606,9099380,9101143,9101446,9104238,9106235,9106490,9107523,9109320,9109866,9110313,9112158,9112376,9113359,9115763	9067839,9068224,9068842,9069813,9070578,9072486,9072871,9074783,9076936,9077420,9077857,9079331,9079815,9080177,9089251,9090023,9090482,9091429,9093579,9095084,9095700,9098756,9099523,9101207,9101674,9104400,9106345,9106605,9107644,9109405,9110035,9110334,9112211,9112536,9113543,9115962	0.894737
liver_male_adult_32_years	chr16	4015655	4015665	4015664	-	High_confidence	5	6	11	0.450081	2.921928	chr16	4015652	4015685	SINE|MIR|MIR	+	chr16	3983391	4015682	ADCY9|ENST00000575550.5	-	3983391,3988993,3993405,4007367,4015561	3983440,3989096,3993510,4007558,4015682	0.818182
liver_male_adult_32_years	chr7	139744830	139744850	139744849	-	RAMPAGE_only	8	9	33	1.350243	4.331977	chr7	139744648	139744821	SINE|MIR|MIRb	-	chr7	139583523	139717013	HIPK2|ENST00000342645.7	-	139583523,139600434,139604080,139613201,139614285,139620400,139626600,139628952,139631164,139631601,139715931	139584064,139600596,139604223,139613323,139614493,139620563,139626785,139629039,139631284,139631725,139717013	0.818182
liver_male_adult_32_years	chr21	44483014	44483022	44483014	+	High_confidence	250	252	473	19.353482	5.392970	chr21	44483021	44483326	SINE|Alu|AluSz	+	chr21	44483017	44484754	STRG.129324.2	+	44483017	44484754	0.993658
liver_male_adult_32_years	chr9	114318282	114318307	114318282	-	RAMPAGE_only	46	58	109	4.459893	5.959755	chr9	114317930	114318531	DNA|hAT-Tip100|Zaphod	-	chr9	114294325	114319654	STRG.76807.1	-	114294325,114318193,114319102	114309832,114318330,114319654	0.660550
liver_male_adult_32_years	chr10	3435704	3435748	3435704	-	High_confidence	16	16	48	1.963990	3.414986	chr10	3435309	3436154	LINE|L1|L1MB8	+	chr10	3433865	3434833	STRG.77781.1	-	3433865,3434806	3434362,3434833	0.958333
liver_male_adult_32_years	chr8	124619357	124619382	124619357	-	High_confidence	4	4	12	0.490997	3.418296	chr8	124619245	124619557	LINE|L2|L2c	+	chr8	124589664	124619479	MTSS1|ENST00000519671.1	-	124589664,124591150,124619266	124589711,124591235,124619479	0.500000
liver_male_adult_32_years	chr17	58535490	58535515	58535508	-	RAMPAGE_only	10	10	45	1.841240	5.232159	chr17	58535378	58535602	LINE|CR1|L3	-	chr17	58520249	58532084	SEPT4|NM_080416.3	-	58520249,58520742,58520997,58521253,58521544,58521735,58521966,58525077,58525694,58526219,58526681,58531960	58520485,58520842,58521160,58521350,58521646,58521853,58522101,58525201,58525781,58526313,58526978,58532084	0.711111
liver_male_adult_32_years	chr1	39026177	39026199	39026198	+	High_confidence	3	3	8	0.327332	2.521641	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.875000
liver_male_adult_32_years	chr5	42813788	42813833	42813827	+	High_confidence	13	13	39	1.595742	5.009636	chr5	42813649	42814032	LTR|ERV1|Harlequin-int	+	chr5	42813580	42814584	STRG.42923.1	+	42813580	42814584	0.538462
liver_male_adult_32_years	chr16	20674497	20674498	20674497	+	High_confidence	86	88	93	3.805230	4.661028	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.860215
liver_male_adult_32_years	chr2	36859089	36859107	36859095	+	High_confidence	28	41	89	3.641564	5.463812	chr2	36858764	36859108	LINE|L2|L2b	-	chr2	36859115	36859822	STRG.14190.1	+	36859115	36859822	0.775281
liver_male_adult_32_years	chr3	187041566	187041567	187041566	+	RAMPAGE_only	5	6	6	0.245499	2.584963	chr3	187041603	187041758	SINE|MIR|MIRb	+	chr3	187025482	187042977	ST6GAL1|ENST00000446170.1	+	187025482,187038394,187038741,187042653	187025517,187038491,187038873,187042977	0.666667
liver_male_adult_32_years	chr11	44564426	44564427	44564426	+	High_confidence	4	4	7	0.286415	2.584963	chr11	44564373	44564477	SINE|MIR|MIRc	+	chr11	44564426	44615295	CD82|ENST00000526958.5	+	44564426,44587474,44594642,44600157,44605057,44605354,44615271	44564502,44587556,44594725,44600230,44605182,44605429,44615295	0.571429
liver_male_adult_32_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	42	43	43	1.759407	4.365665	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.976744
liver_male_adult_32_years	chr18	58410183	58410213	58410212	-	RAMPAGE_only	3	3	10	0.409165	2.646439	chr18	58410099	58410385	LINE|L2|L2b	+	chr18	58400453	58417946	STRG.119892.1	-	58400453,58409850,58415796	58408928,58415714,58417946	1.000000
liver_male_adult_32_years	chr3	129724091	129724117	129724116	-	RAMPAGE_only	11	11	25	1.022911	4.243856	chr3	129724100	129724190	LINE|CR1|L3	+	chr3	129647793	129695095	STRG.30286.10	-	129647793,129654967,129670329,129688176	129651795,129655103,129672932,129695095	0.920000
liver_male_adult_32_years	chr12	56795270	56795271	56795270	-	High_confidence	283	301	314	12.847766	4.865697	chr12	56794855	56796404	LTR|ERV1|LTR12C	-	chr12	56794456	56795061	STRG.93085.1	-	56794456	56795061	0.942675
liver_male_adult_32_years	chr1	171214021	171214029	171214028	-	High_confidence	5	6	10	0.409165	3.321928	chr1	171213836	171214165	LTR|ERV1|MER61A	-	chr1	171210872	171214059	STRG.8677.1	-	171210872	171214059	0.500000
liver_male_adult_32_years	chr1	20028406	20028424	20028407	+	High_confidence	34	39	67	2.741402	5.282808	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028429	20091158	PLA2G5|ENST00000465698.5	+	20028429,20059631,20068872,20084820,20086082,20088824,20089788,20090567	20028709,20059692,20069032,20084870,20086227,20088943,20089895,20091158	0.746269
liver_male_adult_32_years	chr9	130593336	130593337	130593336	+	RAMPAGE_only	16	17	17	0.695580	3.405639	chr9	130592851	130593403	LINE|L2|L2a	+	chr9	130581094	130613022	FUBP3|ENST00000465949.1	+	130581094,130595482,130609953,130612455,130612955	130581513,130595588,130609987,130612505,130613022	0.764706
liver_male_adult_32_years	chr6	136225622	136225623	136225622	-	High_confidence	7	9	11	0.450081	3.321928	chr6	136225478	136225763	LTR|ERVL-MaLR|THE1B	-	chr6	136094714	136225595	AL138828.1|ENST00000417643.5	-	136094714,136095715,136095993,136096119,136110995,136117069,136162251,136225537	136094779,136095825,136096019,136096288,136111101,136117172,136162348,136225595	0.636364
liver_male_adult_32_years	chr3	143824513	143824567	143824540	-	RAMPAGE_only	3	3	13	0.531914	3.546594	chr3	143824344	143824714	LINE|L2|L2a	+	chr3	143544096	143848458	STRG.31040.2	-	143544096,143548265,143574087,143578584,143652254,143693191,143795000,143796825,143832018,143848147	143548145,143552450,143574193,143578723,143652360,143693307,143795077,143796903,143832221,143848458	0.692308
liver_male_adult_32_years	chr19	44739088	44739133	44739127	-	High_confidence	5	5	26	1.063828	4.163856	chr19	44739057	44739262	SINE|MIR|MIRb	-	chr19	44735046	44739120	STRG.123742.13	-	44735046	44739120	0.615385
liver_male_adult_32_years	chr7	10973233	10973234	10973233	+	High_confidence	5	5	8	0.327332	2.500000	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	1.000000
liver_male_adult_32_years	chr3	136252284	136252321	136252315	+	RAMPAGE_only	7	8	25	1.022911	4.403856	chr3	136252260	136252524	SINE|Alu|AluSx	-	chr3	136251242	136283914	PCCB|ENST00000462542.5	+	136251242,136255855,136256554,136260478,136261951,136283836	136251292,136255975,136256623,136260535,136262065,136283914	0.840000
liver_male_adult_32_years	chr6	63516560	63516580	63516560	+	High_confidence	2	3	10	0.409165	2.725481	chr6	63516454	63516579	SINE|MIR|MIR	+	chr6	63516396	63520565	STRG.53122.1	+	63516396	63520565	0.500000
liver_male_adult_32_years	chr4	76371880	76371907	76371906	-	RAMPAGE_only	9	9	17	0.695580	3.452820	chr4	76371655	76371956	SINE|Alu|AluSq2	+	chr4	76313001	76407305	CCDC158|ENST00000388914.7	-	76313001,76323301,76325856,76328899,76331343,76332431,76334021,76350995,76351719,76353122,76355323,76357373,76362125,76367293,76369425,76371416,76379289,76382609,76383661,76384087,76384555,76396268,76403137,76407221	76313246,76323409,76326015,76328967,76331403,76332491,76334167,76351121,76351812,76353281,76355436,76357526,76362315,76367776,76369623,76371536,76379404,76382720,76383738,76384415,76384665,76396486,76403276,76407305	0.529412
liver_male_adult_32_years	chr11	126330201	126330225	126330201	+	RAMPAGE_only	3	3	8	0.327332	2.807355	chr11	126330159	126330370	DNA|hAT-Charlie|MER20	+	chr11	126331403	126345749	DCPS|ENST00000530860.5	+	126331403,126343306,126345346	126331550,126343417,126345749	0.625000
liver_male_adult_32_years	chrY	4036475	4036532	4036531	+	High_confidence	40	40	195	7.978708	5.391342	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	0.871795
liver_male_adult_32_years	chr16	20446996	20446997	20446996	-	High_confidence	8	8	8	0.327332	2.750000	chr16	20446813	20447004	SINE|MIR|MIRb	+	chr16	20441249	20447000	AC137056.1|ENST00000575772.1	-	20441249,20442225,20445992,20446866	20441586,20442388,20446111,20447000	1.000000
liver_male_adult_32_years	chr5	172854659	172854703	172854666	+	RAMPAGE_only	10	10	41	1.677575	4.953056	chr5	172854401	172854991	DNA|TcMar-Tigger|MER6A	+	chr5	172834274	172952685	ERGIC1|ENST00000393784.7	+	172834274,172888698,172897001,172909666,172914713,172924004,172926508,172932435,172935187,172950708	172834433,172888760,172897074,172909761,172914838,172924109,172926569,172932536,172935310,172952685	0.731707
liver_male_adult_32_years	chr1	169726050	169726098	169726085	-	RAMPAGE_only	31	32	174	7.119463	3.783530	chr1	169726016	169726301	DNA|hAT-Charlie|Charlie8	-	chr1	169722569	169727843	STRG.8589.1	-	169722569,169725728,169725906,169726698,169727348,169727738	169724509,169725801,169725928,169726806,169727525,169727843	0.988506
liver_male_adult_32_years	chr3	150251400	150251413	150251400	+	RAMPAGE_only	3	4	12	0.490997	3.277613	chr3	150251277	150251495	LTR|ERVL|LTR33	-	chr3	150267611	150281321	STRG.31244.1	+	150267611,150280054	150276109,150281321	0.500000
liver_male_adult_32_years	chr2	62461841	62461864	62461841	-	High_confidence	4	4	11	0.450081	2.921928	chr2	62461773	62461912	SINE|MIR|MIR3	-	chr2	62455175	62461936	STRG.15540.1	-	62455175,62461727	62461163,62461936	0.727273
liver_male_adult_32_years	chr17	81727549	81727560	81727552	+	RAMPAGE_only	3	3	12	0.490997	3.095795	chr17	81727280	81727646	LTR|ERVL-MaLR|MLT1K	+	chr17	81721560	81729542	STRG.117784.30	+	81721560,81725823	81722818,81729542	0.666667
liver_male_adult_32_years	chr7	134527596	134527597	134527596	+	High_confidence	344	350	373	15.261836	6.056831	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.965147
liver_male_adult_32_years	chr11	114296869	114296908	114296907	+	RAMPAGE_only	13	13	86	3.518815	5.226997	chr11	114296850	114296911	SINE|MIR|MIRc	-	chr11	114295824	114312515	STRG.88956.17	+	114295824,114305402	114305089,114312515	0.988372
liver_male_adult_32_years	chr3	98733186	98733231	98733230	+	High_confidence	20	21	63	2.577736	4.935236	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.936508
liver_male_adult_32_years	chr11	71999614	71999642	71999614	+	High_confidence	23	40	125	5.114556	4.832259	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.960000
liver_male_adult_32_years	chr4	68948164	68948165	68948164	-	RAMPAGE_only	9	9	14	0.572830	3.238901	chr4	68946743	68948416	DNA|TcMar-Tigger|Tigger1	-	chr4	68929449	68951361	UGT2A3|ENST00000503012.1	-	68929449,68930545,68931154,68932627,68943281,68945305,68951045	68930092,68930765,68931242,68932759,68943378,68945454,68951361	0.857143
liver_male_adult_32_years	chr10	66389994	66390012	66389994	-	High_confidence	4	4	9	0.368248	2.500000	chr10	66389761	66390035	SINE|Alu|AluJr	-	chr10	66069121	66390195	STRG.79875.4	-	66069121,66103156,66280469,66379151,66389889	66069489,66103249,66280621,66379352,66390195	0.777778
liver_male_adult_32_years	chr5	150640035	150640042	150640041	+	High_confidence	9	9	15	0.613747	3.664498	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.866667
liver_male_adult_32_years	chr11	117185957	117186007	117185957	+	High_confidence	2	2	10	0.409165	2.947703	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.900000
liver_male_adult_32_years	chr6	31587201	31587275	31587201	+	High_confidence	17	17	62	2.536820	4.805669	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588908	LST1|ENST00000376086.7	+	31587199,31587943,31588496	31587318,31587966,31588908	0.983871
liver_male_adult_32_years	chr4	86453202	86453219	86453202	-	High_confidence	2	2	8	0.327332	2.750000	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	1.000000
liver_male_adult_32_years	chr12	80778361	80778362	80778361	+	High_confidence	8	8	12	0.490997	3.251629	chr12	80778022	80778485	LTR|ERVL-MaLR|MLT1H	+	chr12	80778333	80781524	STRG.94448.1	+	80778333,80781440	80779045,80781524	0.916667
liver_male_adult_32_years	chr10	133369930	133369983	133369958	-	RAMPAGE_only	7	7	32	1.309326	4.476410	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.968750
liver_male_adult_32_years	chr9	114327239	114327242	114327241	+	RAMPAGE_only	300	541	759	31.055587	6.230324	chr9	114327052	114327433	LTR|ERVL-MaLR|MSTA	+	chr9	114329788	114333256	ORM2|NM_000608.2	+	114329788,114330433,114330791,114331566,114331825,114333068	114330018,114330576,114330862,114331674,114331929,114333256	0.969697
liver_male_adult_32_years	chr3	188947212	188947237	188947236	+	High_confidence	78	86	190	7.774126	5.552476	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.673684
liver_male_adult_32_years	chr10	47743725	47743728	47743727	+	High_confidence	5	7	10	0.409165	3.121928	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.800000
liver_male_adult_32_years	chr11	111769094	111769135	111769134	-	RAMPAGE_only	6	6	16	0.654663	3.506891	chr11	111769080	111769329	SINE|Alu|AluJb	+	chr11	111742056	111778306	STRG.88879.6	-	111742056,111742522,111743375,111747953,111752158,111753442,111754498,111754979,111755294,111759803,111760818,111764804,111765293,111766442,111769358,111774986,111778175	111742144,111742665,111743530,111748014,111752332,111753577,111754569,111755094,111755450,111759951,111761051,111764905,111765942,111769139,111771392,111775113,111778306	0.937500
liver_male_adult_32_years	chr14	94594328	94594365	94594364	+	High_confidence	23	23	72	2.945985	5.083275	chr14	94594335	94594492	LINE|L2|L2b	-	chr14	94594127	94596948	STRG.104454.1	+	94594127,94595656	94594516,94596948	0.805556
liver_male_adult_32_years	chr7	73665271	73665352	73665351	+	High_confidence	3	3	17	0.695580	3.500000	chr7	73665264	73665404	SINE|Alu|AluSz	+	chr7	73665206	73672107	STRG.61128.1	+	73665206,73666446,73669418,73670019,73671013	73665788,73668096,73669590,73670102,73672107	0.941176
liver_male_adult_32_years	chr7	138565704	138565705	138565704	-	High_confidence	17	17	17	0.695580	3.219528	chr7	138565604	138566149	LTR|ERV1|LTR4	-	chr7	138550256	138565776	STRG.63956.1	-	138550256	138565776	1.000000
liver_male_adult_32_years	chrX	5726116	5726194	5726116	-	High_confidence	35	42	168	6.873964	5.408463	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719073	5726316	STRG.131675.1	-	5719073,5725929	5719872,5726316	0.910714
liver_male_adult_32_years	chr19	15829094	15829095	15829094	+	High_confidence	5	6	7	0.286415	2.584963	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	0.857143
liver_male_adult_32_years	chr1	121511548	121511577	121511576	-	RAMPAGE_only	40	48	108	4.418977	5.807844	chr1	121510491	121511971	LTR|ERV1|HERV9N-int	+	chr1	121489929	121515134	STRG.6642.3	-	121489929	121515134	0.990741
liver_male_adult_32_years	chr6	107812432	107812440	107812432	-	RAMPAGE_only	6	7	15	0.613747	3.664498	chr6	107812365	107812432	DNA|hAT-Charlie|MER113	-	chr6	107720670	107824294	SCML4|ENST00000463507.1	-	107720670,107744948,107746688,107749683,107755570,107824125	107720993,107745143,107746889,107749813,107755664,107824294	0.533333
liver_male_adult_32_years	chr6	31587052	31587061	31587052	+	High_confidence	4	4	11	0.450081	3.277613	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587053	31588909	LST1|ENST00000376089.6	+	31587053,31587943,31588517	31587318,31587966,31588909	0.727273
liver_male_adult_32_years	chr18	31554911	31554933	31554911	-	RAMPAGE_only	22	23	35	1.432076	4.479143	chr18	31554889	31555114	LTR|ERV1|LTR26D	+	chr18	31542145	31556911	DSG2-AS1|ENST00000583706.5	-	31542145,31543101,31545735,31550037,31554641,31555962	31542321,31543395,31545906,31550397,31554715,31556911	0.685714
liver_male_adult_32_years	chr11	64620552	64620641	64620606	-	RAMPAGE_only	18	18	80	3.273316	4.571180	chr11	64620584	64620687	SINE|tRNA-Deu|AmnSINE2	-	chr11	64606173	64623996	NRXN2|ENST00000464307.5	-	64606173,64620293,64622752	64608082,64620372,64623996	0.862500
liver_male_adult_32_years	chr1	155304810	155304822	155304810	+	High_confidence	27	29	144	5.891969	6.192551	chr1	155304792	155304940	SINE|MIR|MIRb	-	chr1	155304805	155318905	STRG.7747.9	+	155304805,155307839,155310063,155312254,155317940,155318168,155318664,155318855	155307748,155308965,155310205,155312395,155318021,155318291,155318753,155318905	0.951389
liver_male_adult_32_years	chr2	38408711	38408722	38408711	+	High_confidence	6	6	22	0.900162	4.165894	chr2	38408662	38408966	SINE|Alu|AluSz	-	chr2	38408704	38412543	STRG.14319.1	+	38408704,38409092,38411790	38408978,38409183,38412543	0.954545
liver_male_adult_32_years	chr2	20207640	20207665	20207664	-	RAMPAGE_only	11	11	35	1.432076	3.893662	chr2	20207439	20207729	SINE|Alu|AluSz	+	chr2	20204001	20223388	SDC1|ENST00000482879.5	-	20204001,20205342,20223202	20204291,20205424,20223388	0.914286
liver_male_adult_32_years	chr19	48868595	48868617	48868613	-	High_confidence	3231	3823	15580	637.478316	7.637940	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.989730
liver_male_adult_32_years	chr6	79631425	79631453	79631425	+	High_confidence	8	9	22	0.900162	3.697846	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
liver_male_adult_32_years	chr3	142926760	142926767	142926766	+	High_confidence	16	16	26	1.063828	4.286790	chr3	142926619	142927109	LINE|L1|HAL1	+	chr3	142926693	142941771	STRG.31008.2	+	142926693,142933204,142936603,142938474,142941398	142926896,142936333,142936646,142938653,142941771	0.769231
liver_male_adult_32_years	chr1	99765784	99765797	99765792	-	High_confidence	5	7	21	0.859245	3.536887	chr1	99765619	99765906	SINE|Alu|AluYm1	+	chr1	99708702	99765793	FRRS1|NM_001013660.2	-	99708702,99709197,99710833,99712104,99712417,99715585,99717409,99719533,99728492,99729649,99738085,99740792,99742178,99747293,99748572,99748896,99765296	99709120,99709259,99710949,99712163,99712515,99715672,99717525,99719647,99728640,99729748,99738268,99740940,99742273,99747430,99748768,99749001,99765793	0.857143
liver_male_adult_32_years	chr17	47067487	47067513	47067498	-	High_confidence	500	545	1949	79.746164	5.784373	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.956901
liver_male_adult_32_years	chr4	70713116	70713131	70713126	+	RAMPAGE_only	5	6	13	0.531914	3.251629	chr4	70713014	70713322	SINE|Alu|AluSp	-	chr4	70704800	70768622	STRG.36631.7	+	70704800,70716412,70722190,70762518,70763551,70764474,70768537	70715853,70718487,70722751,70762692,70763669,70764576,70768622	0.923077
liver_male_adult_32_years	chr1	67533147	67533195	67533154	-	RAMPAGE_only	24	24	78	3.191483	5.517536	chr1	67533014	67533307	SINE|Alu|AluSz6	-	chr1	67407809	67430440	SERBP1|NM_015640.3	-	67407809,67415165,67420008,67424199,67424887,67425082,67426134,67429987	67413263,67415339,67420186,67424277,67424959,67425223,67426285,67430440	0.641026
liver_male_adult_32_years	chr4	105601379	105601380	105601379	-	High_confidence	4	4	7	0.286415	2.807355	chr4	105601374	105601824	LTR|ERVL|LTR16C	-	chr4	105600333	105601465	STRG.38298.1	-	105600333	105601465	0.571429
liver_male_adult_32_years	chr9	96875573	96875589	96875588	-	RAMPAGE_only	4	4	13	0.531914	3.251629	chr9	96875295	96875538	SINE|MIR|MIRb	-	chr9	96858534	96861153	STRG.75150.1	-	96858534	96861153	0.692308
liver_male_adult_32_years	chr8	17895504	17895524	17895504	-	High_confidence	57095	58247	166993	6832.761001	7.322507	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.928404
liver_male_adult_32_years	chr1	23444376	23444448	23444420	+	High_confidence	7	7	49	2.004906	4.293296	chr1	23444441	23444550	SINE|MIR|MIRb	+	chr1	23444370	23459075	STRG.1280.1	+	23444370	23459075	0.959184
liver_male_adult_32_years	chr15	77058534	77058551	77058534	-	RAMPAGE_only	7	7	15	0.613747	3.324863	chr15	77058288	77058697	LINE|L2|L2c	+	chr15	77046029	77055934	TSPAN3|ENST00000560715.5	-	77046029,77052384,77052776,77054177	77046927,77052468,77052929,77055934	0.600000
liver_male_adult_32_years	chr2	43486716	43486718	43486716	-	RAMPAGE_only	44	51	66	2.700486	4.912538	chr2	43486640	43486924	DNA|hAT-Charlie|MER102b	-	chr2	43230851	43508753	STRG.14591.7	-	43230851,43232712,43279764,43286907,43291695,43292103,43292833,43320445,43344121,43397970,43428099,43430212,43485233,43486436,43487572,43505621,43508647	43231343,43232882,43279896,43287061,43291768,43292222,43293213,43320540,43344237,43398139,43428231,43430302,43485325,43487528,43498955,43505735,43508753	0.848485
liver_male_adult_32_years	chr13	44508804	44508862	44508804	-	RAMPAGE_only	29	30	72	2.945985	5.308010	chr13	44508497	44508853	LINE|L2|L2c	+	chr13	44432142	44474301	TSC22D1|NM_001243798.1	-	44432142,44436043,44474217	44434883,44436095,44474301	0.861111
liver_male_adult_32_years	chr12	10553364	10553365	10553364	+	High_confidence	11	11	12	0.490997	3.277613	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.583333
liver_male_adult_32_years	chr5	80407148	80407152	80407148	+	High_confidence	5	6	11	0.450081	3.459432	chr5	80406956	80407268	SINE|Alu|AluJr	-	chr5	80407083	80448188	STRG.44490.6	+	80407083,80434108,80436755,80439935,80443122,80445262,80448025	80407332,80434217,80439007,80440032,80443284,80445405,80448188	0.636364
liver_male_adult_32_years	chr11	18267803	18267804	18267803	+	RAMPAGE_only	11	11	14	0.572830	3.378783	chr11	18267725	18267943	SINE|MIR|MIRb	-	chr11	18266263	18269977	SAA1|ENST00000405158.2	+	18266263,18266883,18269194,18269716	18266443,18266978,18269333,18269977	1.000000
liver_male_adult_32_years	chr1	159991593	159991622	159991593	-	High_confidence	21	24	46	1.882157	4.689550	chr1	159991512	159991913	LTR|ERV1|MER57B2	+	chr1	159979301	159991663	STRG.7927.2	-	159979301	159991663	0.804348
liver_male_adult_32_years	chr2	20208419	20208443	20208424	+	High_confidence	4	5	13	0.531914	3.238901	chr2	20208386	20208497	SINE|MIR|MIR3	+	chr2	20208414	20214427	STRG.13378.1	+	20208414,20209398	20208516,20214427	0.692308
liver_male_adult_32_years	chr10	94683567	94683591	94683590	+	High_confidence	7	7	23	0.941078	4.106603	chr10	94683574	94683628	DNA|hAT-Charlie|MER5B	+	chr10	94683620	94736190	CYP2C18|ENST00000285979.10	+	94683620,94687769,94688124,94694916,94706783,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94706960,94720537,94724533,94733438,94736190	0.739130
liver_male_adult_32_years	chr12	113422215	113422249	113422215	+	High_confidence	9	9	34	1.391159	4.969816	chr12	113422145	113422229	SINE|MIR|MIRc	+	chr12	113422452	113428070	SDSL|ENST00000547802.1	+	113422452,113427961	113422887,113428070	0.588235
liver_male_adult_32_years	chr13	24183961	24184057	24183995	+	RAMPAGE_only	7	7	72	2.945985	5.302507	chr13	24183886	24184045	SINE|MIR|MIR	-	chr13	24160747	24278769	STRG.96846.6	+	24160747,24191255,24201055,24249476,24251717,24278613	24187508,24201031,24224582,24249842,24251862,24278769	0.972222
liver_male_adult_32_years	chr4	69166578	69166631	69166601	+	High_confidence	8	8	39	1.595742	4.609389	chr4	69166504	69166830	LTR|ERVL|MER21B	+	chr4	69166567	69217239	STRG.36605.1	+	69166567,69178348	69178156,69217239	1.000000
liver_male_adult_32_years	chr6	69825959	69826019	69826018	-	RAMPAGE_only	19	33	149	6.096551	5.821447	chr6	69825808	69826275	LINE|L1|L1MEf	-	chr6	69675748	69797157	LMBRD1|NM_018368.3	-	69675748,69676449,69697562,69699042,69700764,69701442,69701888,69713644,69718955,69737941,69741788,69749340,69752258,69780493,69790295,69796812	69676271,69676541,69697641,69699192,69700869,69701545,69701953,69713797,69719081,69738015,69741877,69749408,69752356,69780554,69790472,69797157	0.637584
liver_male_adult_32_years	chr19	38763531	38763627	38763622	-	High_confidence	67	72	335	13.707011	6.080708	chr19	38763455	38763767	SINE|Alu|AluY	+	chr19	38730677	38763643	STRG.123150.1	-	38730677,38730964,38731106,38733702,38734141,38734318,38734812,38735369,38736109,38736551,38737155,38737474,38738272,38738573,38740050,38741776,38742409,38743032,38743620,38747180,38755261,38762891	38730878,38731023,38731223,38733940,38734204,38734389,38734870,38735544,38736318,38736563,38737388,38737638,38738503,38738648,38740219,38741910,38742528,38743473,38746407,38755007,38761483,38763643	0.994030
liver_male_adult_32_years	chr10	45000268	45000292	45000283	+	High_confidence	60	60	294	12.029437	6.319406	chr10	45000000	45000445	LINE|L2|L2	-	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.772109
liver_male_adult_32_years	chr15	34988764	34988801	34988784	-	High_confidence	3	3	11	0.450081	2.721928	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988954	STRG.105470.2	-	34978340,34987556,34988502	34983490,34987673,34988954	0.909091
liver_male_adult_32_years	chr3	197299286	197299320	197299316	-	High_confidence	7	7	30	1.227494	4.566109	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.800000
liver_male_adult_32_years	chr5	42813728	42813741	42813740	+	High_confidence	3	3	8	0.327332	2.521641	chr5	42813649	42814032	LTR|ERV1|Harlequin-int	+	chr5	42813580	42814584	STRG.42923.1	+	42813580	42814584	0.625000
liver_male_adult_32_years	chr4	41934669	41934684	41934674	-	High_confidence	120	122	274	11.211108	4.537476	chr4	41934560	41934828	LINE|L2|L2c	+	chr4	41895306	41934761	STRG.36066.1	-	41895306,41929365,41934605	41911498,41929495,41934761	0.963504
liver_male_adult_32_years	chr2	101998957	101998978	101998968	+	High_confidence	6	6	22	0.900162	3.884184	chr2	101998446	101999045	LTR|ERVL-MaLR|MLT1H1	-	chr2	101998961	102028423	IL1R2|NR_048564.1	+	101998961,102008514,102009561,102015870,102019637,102022186,102024532,102026110,102028225	101999116,102008642,102009826,102016051,102019812,102022249,102024668,102026253,102028423	0.863636
liver_male_adult_32_years	chr3	39154613	39154673	39154613	-	High_confidence	9	9	34	1.391159	3.843139	chr3	39154504	39154649	LINE|L2|L2c	+	chr3	39141850	39154602	CSRNP1|NM_001320560.1	-	39141850,39144136,39144996,39146477,39154496	39144044,39144451,39145256,39146722,39154602	0.705882
liver_male_adult_32_years	chr16	20480903	20480921	20480920	+	RAMPAGE_only	4	4	14	0.572830	3.392747	chr16	20480967	20481158	SINE|MIR|MIR	+	chr16	20475366	20487211	ACSM2A|ENST00000572843.5	+	20475366,20477368,20478575,20480572,20480821,20483057,20486573	20476659,20477449,20478677,20480700,20480921,20483177,20487211	0.642857
liver_male_adult_32_years	chr20	44470552	44470582	44470552	+	High_confidence	9	9	22	0.900162	4.321928	chr20	44470386	44470783	LINE|L1|HAL1M8	-	chr20	44470485	44491815	STRG.126729.5	+	44470485,44479984,44484336,44486595,44489262	44470961,44480444,44484530,44486706,44491815	0.772727
liver_male_adult_32_years	chr2	211020456	211020492	211020459	+	High_confidence	12	15	68	2.782319	4.925791	chr2	211019512	211021367	LINE|L1|L1PB1	-	chr2	211020445	211129640	STRG.21877.2	+	211020445,211081488,211097909	211020534,211081609,211129640	0.705882
liver_male_adult_32_years	chr12	50924027	50924028	50924027	+	High_confidence	5	5	8	0.327332	2.521641	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	0.500000
liver_male_adult_32_years	chr7	53811930	53811942	53811930	-	High_confidence	18	18	54	2.209488	4.989818	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.833333
liver_male_adult_32_years	chr12	51773664	51773683	51773664	+	RAMPAGE_only	3	5	14	0.572830	3.664498	chr12	51773509	51773813	LINE|L1|L1MB8	+	chr12	51751376	51786771	SCN8A|ENST00000548086.2	+	51751376,51762502,51765670,51768864,51769867,51770528,51774188,51780201,51786541	51751593,51762676,51766027,51769335,51769985,51770683,51774362,51780271,51786771	0.714286
liver_male_adult_32_years	chr8	80485592	80485655	80485618	+	High_confidence	9	15	40	1.636658	4.977710	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.875000
liver_male_adult_32_years	chr16	87384823	87384834	87384823	-	RAMPAGE_only	3	3	9	0.368248	2.500000	chr16	87384638	87384881	SINE|Alu|AluJr	+	chr16	87330810	87383748	STRG.112954.1	-	87330810,87333885,87335303,87336154,87342876,87343597,87347173,87360294,87366673,87367372,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87364494,87366802,87367945,87383748	0.555556
liver_male_adult_32_years	chr5	67818311	67818341	67818321	-	High_confidence	4	4	14	0.572830	2.931209	chr5	67817944	67823959	LINE|L1|L1PA3	+	chr5	67699450	67818322	AC106798.1|ENST00000506819.1	-	67699450,67701490,67817939,67818279	67699725,67701652,67818048,67818322	0.642857
liver_male_adult_32_years	chr16	72014393	72014451	72014418	+	High_confidence	581	582	2198	89.934361	7.480478	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.654231
liver_male_adult_32_years	chr19	39411214	39411223	39411222	-	High_confidence	14	14	27	1.104744	4.546594	chr19	39410928	39411768	LINE|L2|L2a	+	chr19	39410700	39411205	STRG.123075.1	-	39410700	39411205	0.666667
liver_male_adult_32_years	chr12	106120996	106120997	106120996	-	RAMPAGE_only	9	12	13	0.531914	3.418296	chr12	106120931	106121106	DNA|hAT-Charlie|MER5B	-	chr12	106063339	106140033	NUAK1|ENST00000261402.6	-	106063339,106070773,106072723,106083863,106086733,106106404,106138413	106067955,106070906,106072843,106083929,106086885,106106525,106140033	0.538462
liver_male_adult_32_years	chr7	106415632	106415647	106415632	+	High_confidence	38	39	90	3.682481	3.775139	chr7	106415365	106415701	LTR|ERV1|MER65B	-	chr7	106415601	106469004	STRG.62984.1	+	106415601	106469004	0.966667
liver_male_adult_32_years	chr1	176150058	176150068	176150058	-	RAMPAGE_only	2	3	8	0.327332	2.750000	chr1	176149992	176150111	DNA|hAT-Charlie|MER5A	-	chr1	176043215	176135082	COP1|ENST00000459744.5	-	176043215,176043709,176046180,176081151,176085775,176116623,176133846,176135009	176043267,176043818,176046324,176081287,176085890,176116681,176133900,176135082	0.625000
liver_male_adult_32_years	chr11	65382645	65382661	65382645	-	High_confidence	3	4	7	0.286415	2.807355	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	1.000000
liver_male_adult_32_years	chr11	57596442	57596473	57596472	+	High_confidence	3	3	8	0.327332	2.521641	chr11	57596395	57596578	SINE|Alu|AluJo	-	chr11	57597386	57600308	SERPING1|ENST00000405496.5	+	57597386,57598248,57599878	57597531,57598321,57600308	0.875000
liver_male_adult_32_years	chr16	66503198	66503228	66503198	-	RAMPAGE_only	2	2	13	0.531914	3.700440	chr16	66503032	66503523	LINE|L2|L2b	+	chr16	66495783	66504896	STRG.111843.4	-	66495783	66504896	0.923077
liver_male_adult_32_years	chr6	106765109	106765117	106765109	-	RAMPAGE_only	8	9	14	0.572830	3.235926	chr6	106764990	106766155	LINE|L2|L2	-	chr6	106747084	106772293	LINC02532|ENST00000415714.1	-	106747084,106772237	106747288,106772293	0.714286
liver_male_adult_32_years	chrX	103577211	103577212	103577211	+	High_confidence	14	16	16	0.654663	3.625000	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
liver_male_adult_32_years	chr5	177354467	177354514	177354501	+	High_confidence	18	20	54	2.209488	4.644789	chr5	177354455	177354819	LINE|L2|L2c	-	chr5	177354517	177355632	STRG.49507.1	+	177354517	177355632	0.944444
liver_male_adult_32_years	chr5	41209198	41209214	41209213	-	RAMPAGE_only	5	6	10	0.409165	3.121928	chr5	41205257	41211396	LINE|L1|L1PA5	+	chr5	41199812	41213021	C6|ENST00000417809.1	-	41199812,41201557,41203087,41212911	41199912,41201714,41203250,41213021	0.900000
liver_male_adult_32_years	chr2	233012600	233012638	233012637	+	High_confidence	12	13	61	2.495904	4.823379	chr2	233012609	233012781	DNA|hAT-Tip100|MER45A	+	chr2	233012613	233015885	AC106876.1|ENST00000409905.1	+	233012613,233013139,233015706	233012969,233013247,233015885	0.983607
liver_male_adult_32_years	chr11	61529550	61529629	61529561	-	RAMPAGE_only	20	20	155	6.342050	5.994144	chr11	61529333	61529542	SINE|MIR|MIRb	-	chr11	61515312	61531269	STRG.86055.12	-	61515312,61523074,61523826,61524362,61529361	61518731,61523274,61523941,61528185,61531269	0.903226
liver_male_adult_32_years	chr22	17579804	17579839	17579838	+	RAMPAGE_only	4	4	13	0.531914	2.873141	chr22	17579710	17579844	SINE|MIR|MIRb	-	chr22	17569706	17590994	STRG.129629.13	+	17569706,17569923,17579744,17581036,17581357,17582562,17583415,17587924,17589589,17590094	17569796,17569986,17580857,17581159,17581413,17582653,17587301,17588079,17589665,17590994	1.000000
liver_male_adult_32_years	chr6	3872417	3872443	3872417	+	High_confidence	7	8	18	0.736496	3.690117	chr6	3872373	3872668	LTR|ERVL-MaLR|MLT1F	+	chr6	3872366	3874439	STRG.49961.1	+	3872366	3874439	0.888889
liver_male_adult_32_years	chrX	55211183	55211227	55211226	+	RAMPAGE_only	3	3	12	0.490997	2.584963	chrX	55210824	55211497	LTR|ERV1|MER51A	+	chrX	55220346	55224108	PAGE5|NM_001013435.2	+	55220346,55221374,55221766,55222620,55223986	55220452,55221463,55221875,55222746,55224108	0.916667
liver_male_adult_32_years	chr15	34588450	34588453	34588452	-	RAMPAGE_only	15	33	40	1.636658	4.458454	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34379067	34437466	GOLGA8A|NR_027409.1	-	34379067,34381700,34381967,34382150,34382385,34382796,34383440,34383745,34383960,34385047,34385253,34385426,34385739,34386624,34389643,34391122,34398633,34399154,34400711,34404916,34406673,34407523,34435382,34437397	34381613,34381856,34382068,34382251,34382529,34383053,34383528,34383853,34384047,34385157,34385338,34385474,34385778,34387952,34389768,34391426,34398729,34399203,34400759,34405055,34406870,34407735,34435471,34437466	0.675000
liver_male_adult_32_years	chr11	11451698	11451699	11451698	-	High_confidence	43	43	57	2.332238	5.139736	chr11	11451697	11451900	SINE|MIR|MIRb	-	chr11	11270875	11451709	STRG.84161.2	-	11270875,11293028,11327085,11332693,11340818,11372514,11377181,11379080,11432620,11448743,11451474	11271290,11293193,11327181,11332831,11341004,11372629,11377379,11379264,11432787,11448936,11451709	0.894737
liver_male_adult_32_years	chr11	114294987	114294991	114294990	+	High_confidence	5	5	12	0.490997	3.418296	chr11	114294850	114295386	LTR|ERV1|LTR35A	-	chr11	114295812	114312516	NNMT|NM_006169.2	+	114295812,114297950,114312044	114296710,114298158,114312516	1.000000
liver_male_adult_32_years	chr20	44448247	44448248	44448247	+	High_confidence	35	36	51	2.086739	5.136842	chr20	44447665	44448368	LINE|L2|L2b	-	chr20	44448235	44454104	STRG.126729.1	+	44448235	44454104	0.862745
liver_male_adult_32_years	chr12	106121020	106121033	106121020	-	RAMPAGE_only	2	2	9	0.368248	2.947703	chr12	106120931	106121106	DNA|hAT-Charlie|MER5B	-	chr12	106063339	106140033	NUAK1|ENST00000261402.6	-	106063339,106070773,106072723,106083863,106086733,106106404,106138413	106067955,106070906,106072843,106083929,106086885,106106525,106140033	0.666667
liver_male_adult_32_years	chr18	26754103	26754126	26754103	-	High_confidence	132	135	233	9.533533	5.352117	chr18	26753863	26754158	SINE|Alu|AluSz	-	chr18	26730381	26754163	STRG.118741.6	-	26730381,26738023,26741722,26753638	26732580,26738123,26741795,26754163	0.914163
liver_male_adult_32_years	chr3	179740123	179740130	179740129	+	RAMPAGE_only	7	7	14	0.572830	3.664498	chr3	179740114	179740200	SINE|MIR|MIRc	+	chr3	179721563	179761151	USP13|ENST00000497155.1	+	179721563,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179761111	179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179761151	0.928571
liver_male_adult_32_years	chr11	58927664	58927738	58927709	+	High_confidence	16	16	75	3.068734	5.227295	chr11	58927656	58928383	LTR|ERVK|HERVK22-int	-	chr11	58927700	58956405	GLYATL1|ENST00000317391.8	+	58927700,58942539,58943542,58947045,58947857,58954769,58955175,58955609	58927829,58942584,58943666,58947165,58947965,58954896,58955353,58956405	0.586667
liver_male_adult_32_years	chr1	56966213	56966231	56966230	-	High_confidence	3	4	7	0.286415	2.584963	chr1	56966217	56966281	SINE|MIR|MIR	+	chr1	56929209	56966140	C8B|NM_001278544.1	-	56929209,56931809,56933334,56940848,56943695,56945820,56949554,56952047,56954685,56956768,56959528,56960019,56965856	56929558,56931878,56933488,56941012,56943824,56946061,56949752,56952180,56954827,56956910,56959657,56960176,56966140	0.714286
liver_male_adult_32_years	chr2	55618850	55618851	55618850	-	High_confidence	6	6	8	0.327332	2.521641	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.750000
liver_male_adult_32_years	chr10	59000349	59000354	59000349	+	High_confidence	2	2	7	0.286415	2.521641	chr10	59000079	59000419	LTR|ERVL-MaLR|MLT1H	+	chr10	58999625	59001543	LINC00844|ENST00000432535.1	+	58999625,59001228	58999787,59001543	0.571429
liver_male_adult_32_years	chr12	7493196	7493281	7493280	+	High_confidence	100	103	608	24.877203	6.218815	chr12	7493019	7493427	LTR|ERVL-MaLR|MLT1J-int	+	chr12	7493203	7534037	STRG.90653.3	+	7493203	7534037	0.993421
liver_male_adult_32_years	chr17	14374107	14374142	14374137	+	High_confidence	58	84	267	10.924693	6.090312	chr17	14373785	14374201	LTR|ERVL|LTR16C	-	chr17	14374138	14421026	AC022816.1|ENST00000436469.1	+	14374138,14377283,14382017,14397061,14420656	14374228,14377421,14382112,14397172,14421026	0.767790
liver_male_adult_32_years	chr6	57961642	57961653	57961647	+	High_confidence	3	3	8	0.327332	2.521641	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961656	58096507	AL445250.1|ENST00000641829.1	+	57961656,57962180,57965516,57971594,58027671,58043434,58091903,58095770	57961742,57962248,57965743,57971656,58027723,58043527,58092113,58096507	0.500000
liver_male_adult_32_years	chr9	91210474	91210593	91210592	+	High_confidence	15	21	107	4.378060	4.950034	chr9	91210576	91210702	SINE|MIR|MIR	+	chr9	91210336	91221930	STRG.74753.1	+	91210336	91221930	0.953271
liver_male_adult_32_years	chr11	66351514	66351533	66351517	+	RAMPAGE_only	52	59	111	4.541726	5.071771	chr11	66350959	66351598	LINE|L1|L1MB4	-	chr11	66347783	66369977	STRG.86836.4	+	66347783,66349334	66348421,66369977	1.000000
liver_male_adult_32_years	chr16	71894417	71894442	71894441	+	High_confidence	2	2	7	0.286415	2.584963	chr16	71894254	71894545	SINE|Alu|AluSp	-	chr16	71894407	71930639	IST1|NM_001270976.1	+	71894407,71894720,71915625,71916461,71917046,71920738,71921342,71922473,71923287,71924768,71927613	71894481,71894858,71915728,71916642,71917134,71920822,71921453,71922680,71923380,71924817,71930639	0.571429
liver_male_adult_32_years	chr4	782597	782655	782654	+	High_confidence	4	4	17	0.695580	3.875000	chr4	782341	782655	LINE|L2|L2a	+	chr4	782435	796636	STRG.33948.1	+	782435,787962,795279,796220	787866,789357,796106,796636	0.882353
liver_male_adult_32_years	chr9	128921391	128921400	128921399	+	High_confidence	7	8	12	0.490997	3.277613	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.833333
liver_male_adult_32_years	chr7	48110544	48110565	48110544	+	RAMPAGE_only	6	6	15	0.613747	3.664498	chr7	48110543	48110890	LTR|ERV1|LTR56	-	chr7	48171457	48272995	ABCA13|ENST00000417403.5	+	48171457,48192958,48198236,48219353,48221280,48227261,48229824,48234017,48239240,48240866,48242987,48244575,48245511,48245862,48248238,48249211,48268979,48271786	48171552,48193052,48198360,48219505,48221309,48227425,48229955,48234227,48239405,48241066,48243084,48244703,48245612,48246030,48248444,48249351,48269094,48272995	0.800000
liver_male_adult_32_years	chr4	76454271	76454312	76454301	+	RAMPAGE_only	66	71	212	8.674288	6.966095	chr4	76454050	76454343	SINE|Alu|AluSq	-	chr4	76555613	76789073	STRG.36877.1	+	76555613,76563340,76575617,76628865,76710155,76730803,76738760,76749016,76754310,76756448,76759544,76770625,76778808,76783086	76563073,76575534,76627870,76628983,76710287,76730935,76741926,76749090,76755192,76756937,76759695,76770898,76783062,76789073	0.617925
liver_male_adult_32_years	chr17	4143196	4143215	4143199	+	High_confidence	144	151	367	15.016338	5.937469	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.980926
liver_male_adult_32_years	chr17	50476632	50476675	50476652	-	High_confidence	33	37	84	3.436982	5.625368	chr17	50476465	50476629	SINE|MIR|MIRb	-	chr17	50464497	50476652	STRG.116169.2	-	50464497,50465293,50465706,50468039,50476386	50465049,50465439,50465870,50471085,50476652	0.511905
liver_male_adult_32_years	chr19	46350849	46350870	46350849	+	RAMPAGE_only	14	16	30	1.227494	3.640224	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	1.000000
liver_male_adult_32_years	chr5	32204430	32204458	32204457	+	High_confidence	3	5	11	0.450081	3.121928	chr5	32203734	32204502	LTR|ERVL|MER54A	+	chr5	32204286	32207976	STRG.42427.1	+	32204286,32207591	32204602,32207976	0.545455
liver_male_adult_32_years	chr15	40389196	40389282	40389281	+	RAMPAGE_only	7	7	44	1.800324	4.739991	chr15	40389143	40389448	SINE|Alu|AluSp	-	chr15	40383254	40392023	KNSTRN|ENST00000559083.1	+	40383254,40389505,40389835,40391492,40391948	40383322,40389611,40389929,40391554,40392023	0.886364
liver_male_adult_32_years	chr4	69496137	69496150	69496149	+	High_confidence	4	5	11	0.450081	3.121928	chr4	69496090	69496324	SINE|Alu|AluYk11	-	chr4	69496160	69497565	STRG.36616.1	+	69496160,69497488	69497380,69497565	0.909091
liver_male_adult_32_years	chr11	57568212	57568213	57568212	-	High_confidence	17	17	19	0.777413	3.683542	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	0.947368
liver_male_adult_32_years	chr2	31710218	31710270	31710269	-	RAMPAGE_only	13	14	27	1.104744	4.532665	chr2	31710063	31710690	LINE|L1|L1MEg	+	chr2	31583640	31729604	STRG.14044.3	-	31583640,31662857,31664864,31729148,31729434	31586561,31663009,31710268,31729244,31729604	0.666667
liver_male_adult_32_years	chr2	227339331	227339356	227339331	+	High_confidence	8	8	16	0.654663	3.375000	chr2	227339254	227339802	LTR|ERVL-MaLR|MLT1G3	-	chr2	227340291	227357131	STRG.22513.16	+	227340291,227347225,227355676,227356985	227340380,227352573,227355761,227357131	1.000000
liver_male_adult_32_years	chr13	50715096	50715097	50715096	-	High_confidence	8	8	11	0.450081	2.921928	chr13	50714806	50715412	LTR|ERVL-MaLR|MLT1E2	-	chr13	50711007	50715483	DLEU7|ENST00000443723.1	-	50711007,50715425	50713240,50715483	0.909091
liver_male_adult_32_years	chr4	118702506	118702514	118702506	+	RAMPAGE_only	5	7	16	0.654663	3.750000	chr4	118702494	118702788	SINE|Alu|AluSz	+	chr4	118697210	118710601	METTL14|ENST00000506780.2	+	118697210,118700549,118703934,118709997	118697323,118700642,118704051,118710601	0.500000
liver_male_adult_32_years	chr15	48783134	48783172	48783171	+	High_confidence	6	6	29	1.186577	3.994680	chr15	48783168	48783602	DNA|TcMar-Tigger|Tigger8	+	chr15	48783189	48784121	AC012379.1|ENST00000558304.1	+	48783189,48783897	48783371,48784121	0.793103
liver_male_adult_32_years	chr4	186260356	186260362	186260359	-	High_confidence	2	2	7	0.286415	2.584963	chr4	186259848	186260334	DNA|hAT-Charlie|MER1A	-	chr4	186247288	186260352	STRG.41305.1	-	186247288,186258245	186251634,186260352	0.857143
liver_male_adult_32_years	chrX	31932452	31932495	31932494	-	High_confidence	30	32	132	5.400972	5.393387	chrX	31932463	31932747	SINE|Alu|AluSx1	+	chrX	31729685	31932503	STRG.133110.13	-	31729685,31773959,31819974,31836717,31875187,31929595,31932079,31932352	31729748,31774192,31820083,31836819,31875373,31929745,31932227,31932503	0.924242
liver_male_adult_32_years	chr1	89272843	89272887	89272886	-	High_confidence	22	28	224	9.165285	5.609246	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.964286
liver_male_adult_32_years	chr9	114078561	114078581	114078580	-	High_confidence	5	5	10	0.409165	3.321928	chr9	114078565	114078744	SINE|MIR|MIRc	-	chr9	114060126	114078472	AMBP|ENST00000265132.7	-	114060126,114060924,114061423,114062676,114069698,114072924,114074035,114074959,114076597,114078092	114060270,114061098,114061591,114062758,114069745,114073026,114074152,114075036,114076740,114078472	1.000000
liver_male_adult_32_years	chr17	16387341	16387352	16387341	+	High_confidence	3	3	10	0.409165	3.121928	chr17	16387121	16387432	SINE|Alu|AluYf1	+	chr17	16387064	16388432	STRG.114338.1	+	16387064	16388432	0.600000
liver_male_adult_32_years	chr16	81888922	81888932	81888928	+	High_confidence	2	3	9	0.368248	3.000000	chr16	81888780	81889003	DNA|hAT-Charlie|MER58A	+	chr16	81889338	81900780	PLCG2|ENST00000562605.5	+	81889338,81891471,81893708,81895806,81900611	81889399,81891590,81893794,81895927,81900780	0.555556
liver_male_adult_32_years	chr2	230512901	230512947	230512934	-	High_confidence	10	10	47	1.923073	5.001823	chr2	230512608	230513152	DNA|hAT-Charlie|MER1A	-	chr2	230438667	230513285	STRG.22832.5	-	230438667,230448822,230460922,230464147	230443365,230460579,230462515,230513285	0.978723
liver_male_adult_32_years	chr6	53616975	53617122	53617008	-	High_confidence	689	746	2360	96.562826	5.348086	chr6	53616804	53617217	LTR|ERVL-MaLR|MSTA	-	chr6	53615169	53616770	STRG.52932.1	-	53615169	53616770	0.683475
liver_male_adult_32_years	chr1	226397461	226397501	226397494	-	RAMPAGE_only	3	3	14	0.572830	3.238901	chr1	226397476	226397728	LTR|ERVL-MaLR|MSTA	+	chr1	226388697	226392792	PARP1|ENST00000469663.1	-	226388697,226390409,226392198,226392639	226388755,226390624,226392314,226392792	0.928571
liver_male_adult_32_years	chr22	50387647	50387658	50387647	+	High_confidence	102	165	325	13.297847	7.381456	chr22	50387583	50387737	DNA|hAT-Blackjack|MER63B	-	chr22	50387638	50444371	STRG.131657.3	+	50387638,50388985,50393749,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439700,50439960,50440821,50443865,50444198	50387738,50389111,50393799,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50437068,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50444371	0.578462
liver_male_adult_32_years	chr16	4355592	4355593	4355592	-	High_confidence	190	190	190	7.774126	5.951272	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.736842
liver_male_adult_32_years	chr16	28688559	28688596	28688559	+	High_confidence	3	5	16	0.654663	2.952820	chr16	28688394	28688869	LTR|ERVL|LTR41B	+	chr16	28688557	28735730	EIF3C|NM_001199142.1	+	28688557,28711656,28713700,28713908,28714320,28714635,28714818,28715306,28723163,28723447,28724321,28724657,28724918,28726604,28727020,28731828,28734519,28734777,28734931,28735172,28735430	28688828,28711787,28713766,28714098,28714446,28714690,28714928,28715434,28723323,28723551,28724463,28724783,28725012,28726795,28727245,28732192,28734679,28734843,28735019,28735335,28735730	1.000000
liver_male_adult_32_years	chr8	99893230	99893262	99893254	-	High_confidence	2	2	9	0.368248	3.000000	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.888889
liver_male_adult_32_years	chr16	13246231	13246262	13246261	+	High_confidence	28	34	165	6.751215	5.645231	chr16	13246112	13246474	LTR|ERVL-MaLR|THE1B	+	chr16	13246217	13265004	STRG.110223.10	+	13246217,13262712	13262640,13265004	0.527273
liver_male_adult_32_years	chr18	12554978	12554987	12554978	-	RAMPAGE_only	4	4	11	0.450081	3.027169	chr18	12554790	12555279	LTR|ERV1|LOR1a	+	chr18	12493138	12516225	SPIRE1|ENST00000487491.1	-	12493138,12496015,12506476,12512453,12516070	12493201,12496102,12506641,12512531,12516225	0.909091
liver_male_adult_32_years	chr16	72013635	72013715	72013687	+	High_confidence	6	11	42	1.718491	4.448234	chr16	72013583	72013723	DNA|hAT-Charlie|MER5B	+	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.833333
liver_male_adult_32_years	chr5	80407084	80407085	80407084	+	High_confidence	10	11	14	0.572830	3.392747	chr5	80406956	80407268	SINE|Alu|AluJr	-	chr5	80407083	80448188	STRG.44490.6	+	80407083,80434108,80436755,80439935,80443122,80445262,80448025	80407332,80434217,80439007,80440032,80443284,80445405,80448188	0.785714
liver_male_adult_32_years	chr18	74241019	74241061	74241055	-	High_confidence	11	11	51	2.086739	4.710501	chr18	74240991	74241158	DNA|TcMar-Tigger|Tigger13a	+	chr18	74211390	74240555	AC090398.1|ENST00000580403.1	-	74211390,74240271	74211563,74240555	0.607843
liver_male_adult_32_years	chr11	111791666	111791714	111791713	-	RAMPAGE_only	8	8	29	1.186577	4.444188	chr11	111791539	111791809	LINE|L2|L2c	+	chr11	111786285	111809690	ALG9|ENST00000525910.1	-	111786285,111798093,111809642	111786520,111798195,111809690	0.758621
liver_male_adult_32_years	chr1	27370598	27370606	27370598	-	RAMPAGE_only	2	2	6	0.245499	2.584963	chr1	27370456	27370599	SINE|MIR|MIR1_Amn	-	chr1	27369109	27374824	FCN3|NM_173452.1	-	27369109,27370595,27370842,27373135,27373964,27374355,27374727	27369477,27370730,27370972,27373263,27374009,27374451,27374824	1.000000
liver_male_adult_32_years	chr6	113873326	113873347	113873339	-	High_confidence	28	33	126	5.155473	5.460416	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.865079
liver_male_adult_32_years	chr6	160122760	160122782	160122760	+	High_confidence	3	3	11	0.450081	3.121928	chr6	160122776	160122954	SINE|MIR|MIRb	+	chr6	160121935	160158716	SLC22A1|ENST00000460902.2	+	160121935,160130103,160132231,160133956,160136219,160136543,160143540,160154797,160158515	160122346,160130207,160132386,160134125,160136334,160136650,160143649,160154910,160158716	0.909091
liver_male_adult_32_years	chr3	190615287	190615319	190615287	+	High_confidence	175	232	413	16.898495	6.820294	chr3	190615239	190615307	DNA|TcMar-Tigger|Tigger16b	+	chr3	190615307	190629732	IL1RAP|ENST00000412080.1	+	190615307,190620274,190623343,190627322,190629349	190615354,190620440,190623415,190627449,190629732	0.854722
liver_male_adult_32_years	chr3	42770599	42770600	42770599	+	High_confidence	2100	2116	2162	88.461368	5.554226	chr3	42769529	42771022	LTR|ERV1|LTR12C	+	chr3	42770611	42773635	LOC729083|NR_122070.1	+	42770611,42773204	42771077,42773635	0.960222
liver_male_adult_32_years	chr5	134632150	134632167	134632166	+	High_confidence	9	9	20	0.818329	3.784184	chr5	134631917	134632237	SINE|Alu|AluY	+	chr5	134632157	134646606	STRG.47427.4	+	134632157,134644064	134632425,134646606	0.800000
liver_male_adult_32_years	chr7	11192789	11192801	11192800	+	High_confidence	4	5	8	0.327332	2.750000	chr7	11192822	11192883	LINE|L1|L1MA1	+	chr7	11192759	11197417	AC004160.1|ENST00000611449.1	+	11192759,11197309	11193050,11197417	0.500000
liver_male_adult_32_years	chr12	109053947	109053961	109053951	-	High_confidence	46	46	145	5.932885	4.826353	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.868966
liver_male_adult_32_years	chr2	43486775	43486776	43486775	-	RAMPAGE_only	19	21	23	0.941078	3.499228	chr2	43486640	43486924	DNA|hAT-Charlie|MER102b	-	chr2	43230851	43508753	STRG.14591.7	-	43230851,43232712,43279764,43286907,43291695,43292103,43292833,43320445,43344121,43397970,43428099,43430212,43485233,43486436,43487572,43505621,43508647	43231343,43232882,43279896,43287061,43291768,43292222,43293213,43320540,43344237,43398139,43428231,43430302,43485325,43487528,43498955,43505735,43508753	0.913043
liver_male_adult_32_years	chr16	11587465	11587469	11587465	-	High_confidence	3	3	7	0.286415	2.584963	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.857143
liver_male_adult_32_years	chr22	39320381	39320382	39320381	-	High_confidence	5	6	8	0.327332	2.750000	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	1.000000
liver_male_adult_32_years	chr1	66416538	66416550	66416538	+	High_confidence	2	3	8	0.327332	3.000000	chr1	66416257	66416986	LINE|L1|L1MA7	-	chr1	66416553	66439581	STRG.4041.1	+	66416553,66416947,66439439	66416596,66417060,66439581	0.750000
liver_male_adult_32_years	chr15	79897444	79897455	79897454	-	High_confidence	24	24	45	1.841240	4.769329	chr15	79897435	79897625	DNA|TcMar-Tigger|Tigger3c	-	chr15	79844975	79897379	MTHFS|ENST00000559722.2	-	79844975,79889092,79897160	79845442,79889354,79897379	0.977778
liver_male_adult_32_years	chr8	143013285	143013295	143013285	-	RAMPAGE_only	3	4	9	0.368248	2.750000	chr8	143013062	143013336	LTR|ERV1|MER4CL34	+	chr8	142982048	143018381	LY6E-DT|ENST00000522060.1	-	142982048,143009048,143018159	142982501,143009207,143018381	0.555556
liver_male_adult_32_years	chr19	54617130	54617150	54617147	+	High_confidence	13	14	42	1.718491	4.887716	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.666667
liver_male_adult_32_years	chr20	45833293	45833310	45833293	-	High_confidence	5	5	16	0.654663	3.323231	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.937500
liver_male_adult_32_years	chr8	18170565	18170569	18170565	+	High_confidence	35	36	54	2.209488	4.586009	chr8	18170361	18170677	LTR|ERV1|MER57C1	+	chr8	18170476	18192850	STRG.65613.6	+	18170476,18170678,18185072	18170507,18185051,18192850	0.888889
liver_male_adult_32_years	chr13	80074527	80074573	80074556	-	High_confidence	33	36	124	5.073640	6.049721	chr13	80074227	80075072	LTR|ERV1|LTR1A2	+	chr13	80045825	80075039	STRG.98915.2	-	80045825,80052225,80069778,80070301,80074478	80050409,80065295,80069814,80073523,80075039	0.733871
liver_male_adult_32_years	chr3	12648633	12648664	12648663	-	RAMPAGE_only	6	8	12	0.490997	3.584963	chr3	12648598	12648757	SINE|Alu|AluSz6	+	chr3	12584332	12664125	RAF1|ENST00000423275.5	-	12584332,12584846,12585121,12585680,12587590,12590797,12591707,12599690,12600151,12600387,12604135,12606200,12608765,12609232,12618514,12663812	12584657,12584981,12585253,12585799,12587637,12590974,12591792,12599808,12600279,12600415,12604289,12606299,12608923,12609335,12618747,12664125	0.750000
liver_male_adult_32_years	chr6	3788777	3788797	3788780	-	High_confidence	4	5	16	0.654663	3.625000	chr6	3788249	3788773	DNA|hAT-Tip100|MER115	-	chr6	3784134	3789212	STRG.49945.2	-	3784134	3789212	0.937500
liver_male_adult_32_years	chr5	177355863	177355872	177355869	-	RAMPAGE_only	8	8	16	0.654663	3.750000	chr5	177355706	177356068	LTR|ERVL-MaLR|MLT1J2	-	chr5	177331561	177351884	LMAN2|NM_006816.2	-	177331561,177334283,177337135,177337362,177337705,177338487,177351172,177351451	177332246,177334403,177337250,177337524,177337785,177338605,177351291,177351884	0.812500
liver_male_adult_32_years	chr19	6272222	6272235	6272234	-	RAMPAGE_only	5	5	9	0.368248	2.750000	chr19	6272166	6272238	DNA|TcMar-Tc2|Kanga11a	+	chr19	6210688	6278618	STRG.121918.14	-	6210688,6213336,6213725,6214147,6262227	6213170,6213408,6214084,6230713,6278618	0.888889
liver_male_adult_32_years	chr1	89127431	89127432	89127431	-	RAMPAGE_only	56	56	58	2.373154	4.503896	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89110186	89176040	STRG.5284.3	-	89110186,89112471,89114015,89116991,89117576,89120178,89121142,89121776,89125862,89133257,89141545,89147566,89149291,89150329,89152267,89152667,89164730,89171745,89175920	89110266,89112684,89114296,89117234,89117773,89120288,89121270,89121983,89132403,89133451,89141648,89147779,89149572,89150575,89152464,89152777,89164858,89171954,89176040	0.965517
liver_male_adult_32_years	chr10	95472777	95472832	95472777	-	RAMPAGE_only	10	10	59	2.414071	4.823004	chr10	95472588	95472747	SINE|MIR|MIR	-	chr10	95414743	95482671	SORBS1|ENST00000492542.1	-	95414743,95421960,95432447,95437489,95441125,95482433	95414862,95422073,95432576,95437555,95441180,95482671	0.694915
liver_male_adult_32_years	chr1	56569888	56569889	56569888	-	RAMPAGE_only	6	7	8	0.327332	2.750000	chr1	56569708	56570129	LINE|L2|L2c	+	chr1	56494746	56579568	PLPP3|ENST00000371250.3	-	56494746,56511975,56523822,56524276,56536954,56578877	56496676,56512152,56523880,56524554,56537112,56579568	0.625000
liver_male_adult_32_years	chr19	4706814	4706815	4706814	-	RAMPAGE_only	7	8	8	0.327332	2.521641	chr19	4706533	4706821	SINE|Alu|AluSz	+	chr19	4690877	4704151	DPP9|ENST00000599163.5	-	4690877,4694660,4697550,4700215,4702026,4702602,4703885,4704130	4690957,4694823,4697651,4700273,4702155,4702716,4704054,4704151	0.500000
liver_male_adult_32_years	chr19	38761297	38761323	38761300	-	RAMPAGE_only	29	36	98	4.009812	2.627612	chr19	38761205	38761512	SINE|Alu|AluSx	+	chr19	38730677	38763643	STRG.123150.1	-	38730677,38730964,38731106,38733702,38734141,38734318,38734812,38735369,38736109,38736551,38737155,38737474,38738272,38738573,38740050,38741776,38742409,38743032,38743620,38747180,38755261,38762891	38730878,38731023,38731223,38733940,38734204,38734389,38734870,38735544,38736318,38736563,38737388,38737638,38738503,38738648,38740219,38741910,38742528,38743473,38746407,38755007,38761483,38763643	1.000000
liver_male_adult_32_years	chr7	139758594	139758624	139758609	-	RAMPAGE_only	16	17	75	3.068734	5.486348	chr7	139758459	139758816	DNA|hAT-Charlie|MER1B	+	chr7	139561569	139777718	HIPK2|ENST00000406875.7	-	139561569,139575127,139583816,139596716,139600416,139604080,139613201,139614285,139620400,139626600,139628952,139631164,139631601,139715931,139777604	139573397,139575288,139584064,139596998,139600596,139604223,139613323,139614493,139620563,139626785,139629039,139631284,139631725,139717015,139777718	0.866667
liver_male_adult_32_years	chr1	25820171	25820204	25820203	+	High_confidence	4	4	19	0.777413	4.058814	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820187	25826400	MTFR1L|ENST00000528624.5	+	25820187,25823018,25823237,25823643,25826301	25820349,25823128,25823323,25823748,25826400	0.789474
liver_male_adult_32_years	chr7	11193340	11193367	11193366	+	High_confidence	17	27	68	2.782319	4.169858	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.852941
liver_male_adult_32_years	chr8	143558019	143558020	143558019	+	High_confidence	8	9	9	0.368248	2.750000	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.888889
liver_male_adult_32_years	chr14	21024274	21024312	21024294	+	High_confidence	11	17	56	2.291321	5.147640	chr14	21024322	21024505	SINE|MIR|MIR3	+	chr14	21024295	21029271	AL161668.4|ENST00000532213.2	+	21024295,21028445,21028940	21024344,21028534,21029271	0.660714
liver_male_adult_32_years	chr7	7566530	7566538	7566533	-	High_confidence	9	9	24	0.981995	4.055958	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7552461	7566996	AC004982.2|ENST00000609497.5	-	7552461,7555155,7565913	7552922,7555189,7566996	0.875000
liver_male_adult_32_years	chr22	41604060	41604062	41604060	-	RAMPAGE_only	2	4	7	0.286415	2.584963	chr22	41603905	41604023	LINE|L2|L2c	-	chr22	41600892	41602523	DESI1|ENST00000468151.1	-	41600892,41602423	41601190,41602523	0.714286
liver_male_adult_32_years	chr3	80770347	80770393	80770347	-	High_confidence	16	17	81	3.314233	5.051718	chr3	80769735	80770387	LTR|ERV1|LTR1A1	-	chr3	80757533	80770407	STRG.28375.1	-	80757533,80761457,80769758	80757746,80761573,80770407	0.987654
liver_male_adult_32_years	chr16	27214818	27214834	27214818	+	High_confidence	2	3	6	0.245499	2.584963	chr16	27214681	27214841	SINE|MIR|MIRb	+	chr16	27214637	27220667	STRG.110555.8	+	27214637,27218960,27220392,27220565	27215989,27219110,27220485,27220667	1.000000
liver_male_adult_32_years	chr5	173790917	173790981	173790941	-	High_confidence	77	81	434	17.757740	7.102637	chr5	173790732	173790899	DNA|hAT-Tip100|MER115	-	chr5	173786789	173790942	LINC01485|NR_108028.1	-	173786789,173787688,173790635,173790808	173787247,173787745,173790727,173790942	0.921659
liver_male_adult_32_years	chr7	76135346	76135452	76135448	-	High_confidence	27	30	147	6.014718	6.020398	chr7	76135264	76135657	LTR|ERVL|LTR40b	+	chr7	76064249	76135503	STRG.61631.6	-	76064249,76084328,76092062,76093296,76099897,76108230,76108434,76128619,76131967,76134208,76134496	76077295,76091957,76092166,76099514,76104275,76108309,76117886,76128782,76132176,76134403,76135503	0.938776
liver_male_adult_32_years	chrX	118419229	118419289	118419229	+	RAMPAGE_only	3	4	28	1.145661	4.026987	chrX	118415803	118419707	LINE|L1|L1PB1	-	chrX	118392747	118449336	WDR44|ENST00000371848.3	+	118392747,118394054,118395248,118396969,118398386,118404337,118406874,118409488,118410894,118432780,118436701,118441367,118442243,118442564,118443559,118444359,118447059,118448892	118393271,118394185,118395344,118397106,118398470,118404444,118407026,118409627,118410959,118432894,118436824,118441559,118442345,118442680,118443687,118444494,118447114,118449336	0.785714
liver_male_adult_32_years	chr16	28526372	28526439	28526372	-	High_confidence	77	108	233	9.533533	7.121996	chr16	28526223	28526649	LTR|ERV1|MER67A	+	chr16	28501973	28526440	STRG.111068.5	-	28501973,28503694,28503877,28511827,28524346	28502134,28503793,28504050,28524207,28526440	0.914163
liver_male_adult_32_years	chr5	1107240	1107357	1107310	-	RAMPAGE_only	8	8	62	2.536820	5.425892	chr5	1106701	1107319	LTR|ERV1|MER4CL34	+	chr5	1057527	1112035	STRG.41490.3	-	1057527,1060343,1063843,1064082,1065282,1073632,1074566,1075370,1076137,1076693,1077832,1078700,1079397,1081576,1083744,1085231,1086902,1088305,1088981,1093532,1094153,1103672	1057649,1060451,1063975,1064252,1065478,1073801,1074671,1075490,1076236,1076812,1078007,1078758,1079496,1081744,1083956,1085473,1087033,1088360,1089128,1093655,1094248,1112035	0.935484
liver_male_adult_32_years	chr21	22062931	22062958	22062931	-	High_confidence	8	8	39	1.595742	4.496815	chr21	22062350	22062974	LINE|L2|L2a	+	chr21	21972876	22062948	STRG.127950.1	-	21972876,21975559,22032384,22062008	21973242,21975693,22041435,22062948	1.000000
liver_male_adult_32_years	chr17	20921012	20921045	20921012	+	High_confidence	5	5	29	1.186577	4.487123	chr17	20920944	20921033	LINE|L2|L2a	+	chr17	20921044	20930046	CCDC144NL-AS1|ENST00000443508.6	+	20921044,20924358,20929430	20921169,20924833,20930046	0.965517
liver_male_adult_32_years	chr19	40751783	40751827	40751802	-	High_confidence	219	244	552	22.585881	4.515492	chr19	40751529	40751903	LINE|L2|L2b	+	chr19	40740855	40751824	STRG.123252.2	-	40740855,40742072,40743904,40744558,40745129	40741864,40742770,40744196,40744683,40751824	0.976449
liver_male_adult_32_years	chr19	35137184	35137206	35137205	+	RAMPAGE_only	65	75	165	6.751215	5.575839	chr19	35137130	35137263	SINE|MIR|MIRc	-	chr19	35138788	35143055	FXYD1|NM_021902.3	+	35138788,35140075,35140596,35141131,35141535,35142471,35142719,35142916	35138894,35140140,35140629,35141206,35141572,35142521,35142771,35143055	0.903030
liver_male_adult_32_years	chr6	79631273	79631329	79631302	+	High_confidence	1427	1433	4361	178.436645	6.489254	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.976152
liver_male_adult_32_years	chr17	5412954	5412961	5412960	-	RAMPAGE_only	8	9	16	0.654663	3.452820	chr17	5412904	5413023	LTR|ERV1|LTR78B	+	chr17	5408736	5418229	NUP88|ENST00000572809.1	-	5408736,5410702,5414008,5416512,5418014	5408909,5410789,5414134,5416682,5418229	0.750000
liver_male_adult_32_years	chr19	3062922	3062940	3062939	-	High_confidence	6	8	20	0.818329	4.021928	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	1.000000
liver_male_adult_32_years	chrX	106007840	106007846	106007845	-	High_confidence	12	13	26	1.063828	3.803509	chrX	106007706	106007800	SINE|MIR|MIRb	-	chrX	105999030	106007942	STRG.135857.2	-	105999030	106007942	0.807692
liver_male_adult_32_years	chr19	7732792	7732793	7732792	-	High_confidence	40	45	45	1.841240	4.880525	chr19	7732758	7732907	SINE|Alu|FLAM_C	+	chr19	7729086	7732794	STRG.121984.1	-	7729086,7729820,7730018,7730350,7730754,7731025,7731265,7731660,7732047,7732791	7729504,7729936,7730167,7730440,7730859,7731088,7731319,7731771,7732122,7732794	0.955556
liver_male_adult_32_years	chr12	6542366	6542395	6542366	-	RAMPAGE_only	2	2	8	0.327332	2.521641	chr12	6542251	6542331	DNA|TcMar-Tc2|Kanga11a	-	chr12	6539606	6549113	IFFO1|ENST00000396830.2	-	6539606,6541511,6548064,6548424,6548667	6540588,6541642,6548160,6548545,6549113	0.625000
liver_male_adult_32_years	chr8	143018394	143018447	143018394	-	High_confidence	25	26	101	4.132562	5.583505	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.792079
liver_male_adult_32_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	32	32	32	1.309326	4.262199	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.937500
liver_male_adult_32_years	chr2	210540250	210540291	210540290	+	RAMPAGE_only	3	3	12	0.490997	3.022055	chr2	210540076	210540367	LTR|Gypsy|LTR81B	-	chr2	210556537	210679107	CPS1|ENST00000233072.9	+	210556537,210573297,210576345,210577420,210579713,210582616,210588057,210590105,210590799,210591830,210592878,210594507,210595486,210599371,210600554,210602201,210605101,210606730,210608360,210612116,210616422,210637701,210639149,210639995,210642483,210647862,210648472,210650362,210654024,210656524,210658598,210660484,210663122,210668185,210674901,210675727,210677006,210677886	210556859,210573407,210576490,210577510,210579770,210582709,210588147,210590234,210590906,210591969,210592956,210594606,210595582,210599561,210600712,210602330,210605246,210606941,210608559,210612293,210616541,210637843,210639215,210640059,210642665,210648057,210648540,210650438,210654102,210656632,210658688,210660655,210663197,210668284,210674961,210675840,210677136,210679107	0.833333
liver_male_adult_32_years	chr9	101385007	101385008	101385007	-	High_confidence	8617	8969	9340	382.159658	7.076519	chr9	101384858	101386000	LTR|ERVK|MER11A	-	chr9	101360416	101385005	BAAT|NM_001701.3	-	101360416,101368119,101370938,101384854	101363015,101368322,101371463,101385005	0.826767
liver_male_adult_32_years	chr12	113399112	113399114	113399112	-	RAMPAGE_only	4	8	9	0.368248	3.000000	chr12	113398993	113399080	SINE|MIR|MIRc	-	chr12	113396639	113403886	SDS|ENST00000553112.5	-	113396639,113398514,113398706,113399111,113399555,113403767	113397392,113398606,113398846,113399151,113399710,113403886	0.888889
liver_male_adult_32_years	chr15	85781052	85781057	85781052	-	RAMPAGE_only	5	5	15	0.613747	3.664498	chr15	85781049	85781156	SINE|Alu|AluSq10	+	chr15	85759329	85794918	STRG.108693.3	-	85759329,85768016,85770616	85761011,85769820,85794918	0.933333
liver_male_adult_32_years	chr13	106561950	106561951	106561950	-	High_confidence	47	48	48	1.963990	5.198102	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.791667
liver_male_adult_32_years	chr1	20896892	20896921	20896920	-	RAMPAGE_only	6	6	10	0.409165	3.121928	chr1	20896464	20897047	DNA|TcMar-Tigger|Tigger3b	+	chr1	20806469	21050994	EIF4G3|ENST00000264211.12	-	20806469,20810737,20813157,20817391,20825099,20827616,20829146,20840855,20849414,20851257,20853559,20854977,20857402,20860384,20862227,20864475,20865115,20879322,20886200,20893516,20895367,20899696,20904882,20941490,20950002,20969473,20973001,20980333,20981047,21002712,21050865	20807500,20810884,20813239,20817538,20825198,20827698,20829272,20841028,20849530,20851478,20853677,20855071,20857497,20860517,20862332,20864712,20865262,20879520,20886371,20893636,20895501,20899943,20904971,20942330,20950111,20969596,20973099,20980448,20981227,21002808,21050994	0.600000
liver_male_adult_32_years	chr12	118138997	118139017	118138997	+	High_confidence	5	5	9	0.368248	2.500000	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.888889
liver_male_adult_32_years	chr7	134527714	134527715	134527714	+	High_confidence	9	10	10	0.409165	2.921928	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527619	134537087	AKR1B10|ENST00000475559.1	+	134527619,134530642,134531907,134533003,134535616,134536708,134537050	134527977,134530810,134532024,134533081,134535663,134536772,134537087	1.000000
liver_male_adult_32_years	chr3	9109558	9109559	9109558	-	RAMPAGE_only	5	6	8	0.327332	2.807355	chr3	9109543	9109955	LINE|L2|L2c	-	chr3	9006978	9124977	SRGAP3|ENST00000618999.4	-	9006978,9010307,9013307,9013736,9014741,9015596,9025260,9026934,9028099,9032649,9038062,9047390,9049260,9053026,9056232,9058250,9060230,9064395,9080024,9104679,9124724	9008347,9010387,9013535,9013842,9014841,9015731,9025338,9026995,9028130,9032752,9038090,9047475,9049469,9053224,9056334,9058472,9060359,9064581,9080087,9104842,9124977	0.500000
liver_male_adult_32_years	chr7	150343404	150343440	150343438	+	High_confidence	4	8	20	0.818329	3.747413	chr7	150342909	150343584	LTR|ERV1|LTR49	+	chr7	150343421	150358306	STRG.64471.1	+	150343421,150357298	150343641,150358306	0.650000
liver_male_adult_32_years	chr9	89671135	89671140	89671139	+	RAMPAGE_only	22	26	38	1.554825	4.486348	chr9	89670891	89671194	LINE|L1|L1ME3D	-	chr9	89672374	89673463	STRG.74662.1	+	89672374	89673463	0.657895
liver_male_adult_32_years	chr17	1744660	1744702	1744668	+	RAMPAGE_only	3	3	11	0.450081	3.277613	chr17	1744527	1744688	SINE|MIR|MIRc	-	chr17	1743025	1755268	SERPINF2|ENST00000382061.4	+	1743025,1744991,1745174,1745332,1745707,1747018,1747308,1748597,1752585,1754121	1743076,1745058,1745213,1745395,1745909,1747162,1747512,1748740,1752790,1755268	1.000000
liver_male_adult_32_years	chr20	50267467	50267502	50267501	+	High_confidence	14	18	69	2.823235	4.761891	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267498	50278427	SMIM25|ENST00000445003.5	+	50267498,50277490,50278176	50267663,50277613,50278427	0.782609
liver_male_adult_32_years	chr3	149224221	149224231	149224225	+	High_confidence	364	368	905	37.029389	6.680442	chr3	149224217	149224520	SINE|Alu|AluY	+	chr3	149224105	149231124	STRG.31198.1	+	149224105,149224996,149226007	149224316,149225376,149231124	0.782320
liver_male_adult_32_years	chr5	41209267	41209295	41209267	-	RAMPAGE_only	1	1	7	0.286415	2.584963	chr5	41205257	41211396	LINE|L1|L1PA5	+	chr5	41199812	41213021	C6|ENST00000417809.1	-	41199812,41201557,41203087,41212911	41199912,41201714,41203250,41213021	0.571429
liver_male_adult_32_years	chr1	43553113	43553165	43553158	+	RAMPAGE_only	16	19	67	2.741402	4.843139	chr1	43553152	43553374	SINE|MIR|MIR	+	chr1	43545075	43579284	PTPRF|ENST00000437607.1	+	43545075,43553491,43553799,43569589,43578809,43579175	43545166,43553637,43553941,43569778,43578920,43579284	0.940299
liver_male_adult_32_years	chr14	88024549	88024593	88024549	+	RAMPAGE_only	795	800	2458	100.572638	7.618592	chr14	88024340	88025306	LTR|ERVK|LTR5B	+	chr14	88044727	88150631	STRG.103710.9	+	88044727,88084036,88117582	88079368,88111998,88150631	0.526851
liver_male_adult_32_years	chr16	75119348	75119411	75119410	+	High_confidence	228	233	338	13.829761	6.188780	chr16	75119199	75119791	LTR|ERV1|MER4-int	+	chr16	75119557	75144200	AC099508.2|ENST00000563098.1	+	75119557,75126175,75127830,75132508,75144087	75119582,75126312,75127951,75132622,75144200	0.571006
liver_male_adult_32_years	chr1	43250373	43250501	43250373	-	High_confidence	113	116	566	23.158712	6.650629	chr1	43249744	43250419	LTR|ERV1|LOR1-int	-	chr1	43194683	43250391	EBNA1BP2|ENST00000474566.1	-	43194683,43206345,43211449,43215265,43250218	43194949,43206392,43211567,43215393,43250391	0.611307
liver_male_adult_32_years	chr15	56737904	56737906	56737904	-	High_confidence	22	49	58	2.373154	5.316109	chr15	56737845	56738254	LTR|ERVL-MaLR|MLT1J2	+	chr15	56734189	56738076	STRG.106756.18	-	56734189	56738076	0.672414
liver_male_adult_32_years	chr15	40894520	40894544	40894543	+	High_confidence	5	5	13	0.531914	3.418296	chr15	40894565	40894630	LINE|CR1|X6A_LINE	+	chr15	40894466	40902861	VPS18|ENST00000558474.1	+	40894466,40895937,40898906,40902615	40894859,40896079,40898998,40902861	0.846154
liver_male_adult_32_years	chr11	111097328	111097352	111097351	-	High_confidence	2	2	7	0.286415	2.807355	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	1.000000
liver_male_adult_32_years	chr10	94683450	94683508	94683483	+	High_confidence	38	38	148	6.055635	5.740612	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_001128925.1	+	94683493,94687769,94688124,94694916,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94720537,94724533,94733438,94736190	0.986486
liver_male_adult_32_years	chr1	112850312	112850324	112850312	+	High_confidence	3	3	8	0.327332	3.000000	chr1	112850184	112850373	SINE|MIR|MIR	+	chr1	112850075	112877867	AL390729.1|ENST00000422022.1	+	112850075,112877729	112850427,112877867	0.625000
liver_male_adult_32_years	chr5	77088100	77088109	77088108	+	High_confidence	3	3	7	0.286415	2.807355	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.857143
liver_male_adult_32_years	chr3	52780178	52780204	52780183	+	High_confidence	3	3	13	0.531914	2.931209	chr3	52780128	52780250	SINE|Alu|FLAM_C	+	chr3	52780116	52783067	ITIH1|ENST00000494603.1	+	52780116,52781939,52782150,52782956	52780382,52782065,52782267,52783067	0.923077
liver_male_adult_32_years	chr19	40940407	40940424	40940407	+	RAMPAGE_only	3	3	11	0.450081	3.027169	chr19	40940291	40940510	SINE|Alu|AluSx3	-	chr19	40935903	40949234	STRG.123240.3	+	40935903,40936391,40938968,40942064,40944330,40944710,40949052	40936259,40936541,40941472,40942206,40944518,40944852,40949234	0.909091
liver_male_adult_32_years	chr14	81170392	81170420	81170402	-	High_confidence	27	29	108	4.418977	5.136486	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.898148
liver_male_adult_32_years	chr2	96303177	96303178	96303177	-	RAMPAGE_only	17	20	20	0.818329	3.684184	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
liver_male_adult_32_years	chr1	189149762	189149763	189149762	+	High_confidence	33	34	38	1.554825	4.163210	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	189149656	189452268	STRG.9408.1	+	189149656,189150541,189307728,189389824,189452040	189149876,189150759,189307878,189389879,189452268	0.842105
liver_male_adult_32_years	chr9	114318347	114318370	114318347	-	RAMPAGE_only	7	9	20	0.818329	3.921928	chr9	114317930	114318531	DNA|hAT-Tip100|Zaphod	-	chr9	114294325	114319654	STRG.76807.1	-	114294325,114318193,114319102	114309832,114318330,114319654	0.650000
liver_male_adult_32_years	chr9	62897380	62897401	62897380	+	High_confidence	4	4	9	0.368248	2.503258	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.555556
liver_male_adult_32_years	chr15	89112669	89112701	89112682	+	RAMPAGE_only	6	6	19	0.777413	3.392147	chr15	89112629	89112704	SINE|MIR|MIRc	+	chr15	89088429	89195751	ABHD2|ENST00000565973.5	+	89088429,89090282,89102396,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89195751	0.526316
liver_male_adult_32_years	chr2	228710035	228710050	228710049	+	High_confidence	4	4	11	0.450081	2.913977	chr2	228709327	228711277	LINE|L1|L1ME2z	-	chr2	228710052	228716722	STRG.22632.1	+	228710052,228710551,228714557,228716643	228710101,228710642,228714645,228716722	0.545455
liver_male_adult_32_years	chr14	94735759	94735760	94735759	-	RAMPAGE_only	246	247	247	10.106364	5.812075	chr14	94735486	94735994	LTR|ERVL-MaLR|MLT1H1	+	chr14	94378375	94390693	SERPINA1|ENST00000393088.8	-	94378375,94379463,94380870,94382591,94388559,94388800,94390456	94378640,94379611,94381141,94383241,94388663,94389010,94390693	0.991903
liver_male_adult_32_years	chr14	35353916	35353943	35353942	-	High_confidence	31	35	89	3.641564	4.930531	chr14	35353804	35354147	LINE|L1|L1ME3G	+	chr14	35349055	35354048	STRG.100683.1	-	35349055,35353867	35353741,35354048	0.988764
liver_male_adult_32_years	chr17	36002062	36002115	36002113	-	High_confidence	9	16	38	1.554825	4.702565	chr17	36001935	36002541	LTR|ERV1|MER50	-	chr17	35997581	36002038	CCL15|NM_032965.5	-	35997581,35998279,35998865,36001416	35997860,35998391,35998925,36002038	0.973684
liver_male_adult_32_years	chr13	48492695	48492696	48492695	-	High_confidence	5	5	7	0.286415	2.584963	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.714286
liver_male_adult_32_years	chr10	4678146	4678177	4678176	-	High_confidence	4	4	13	0.531914	3.418296	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.538462
liver_male_adult_32_years	chr15	80059918	80059933	80059918	+	High_confidence	115	127	315	12.888682	5.015763	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.961905
liver_male_adult_32_years	chr4	184768328	184768349	184768348	-	RAMPAGE_only	16	16	29	1.186577	4.208966	chr4	184768056	184768306	SINE|MIR|MIRc	-	chr4	184755600	184766702	ACSL1|ENST00000503407.5	-	184755600,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621	184757265,184757706,184757920,184760500,184762493,184763255,184764925,184765986,184766702	0.551724
liver_male_adult_32_years	chr19	11344683	11344702	11344701	+	High_confidence	10	13	56	2.291321	5.195486	chr19	11344711	11344763	DNA|hAT-Tip100|MER91A	+	chr19	11344694	11346298	STRG.121282.15	+	11344694,11346017	11345381,11346298	0.946429
liver_male_adult_32_years	chr5	41208818	41208834	41208818	-	RAMPAGE_only	3	3	8	0.327332	2.807355	chr5	41205257	41211396	LINE|L1|L1PA5	+	chr5	41199812	41213021	C6|ENST00000417809.1	-	41199812,41201557,41203087,41212911	41199912,41201714,41203250,41213021	0.625000
liver_male_adult_32_years	chr14	95295592	95295608	95295607	-	High_confidence	6	6	15	0.613747	3.039149	chr14	95295328	95295662	LINE|L2|L2b	-	chr14	95213224	95296243	CLMN|ENST00000555336.6	-	95213224,95215640,95221690,95223759,95230071,95260514,95296133	95213409,95215733,95221774,95223855,95230133,95260602,95296243	0.866667
liver_male_adult_32_years	chr4	69525984	69526017	69525984	-	High_confidence	46	46	167	6.833047	4.814789	chr4	69525819	69526138	SINE|Alu|AluY	+	chr4	69480164	69526014	UGT2B4|NM_001297616.1	-	69480164,69485207,69486608,69489438,69493692,69495140,69525686	69480910,69485427,69486696,69489570,69493841,69495410,69526014	0.826347
liver_male_adult_32_years	chr16	81314782	81314819	81314782	-	High_confidence	29	29	116	4.746308	5.919390	chr16	81314567	81314733	SINE|MIR|MIR	-	chr16	81313526	81315073	STRG.112681.1	-	81313526	81315073	0.956897
liver_male_adult_32_years	chr17	70947798	70947852	70947798	-	High_confidence	48	51	312	12.765933	6.509958	chr17	70947384	70948869	LINE|L1|L1PB1	+	chr17	70945338	70947792	STRG.117069.2	-	70945338	70947792	0.618590
liver_male_adult_32_years	chr7	30594431	30594432	30594431	+	High_confidence	7	7	9	0.368248	2.947703	chr7	30594385	30594501	SINE|MIR|MIR3	+	chr7	30594680	30634033	GARS|ENST00000389266.7	+	30594680,30598795,30599946,30601058,30603033,30603495,30609584,30612095,30615895,30617113,30621392,30622316,30626233,30628559,30631447,30632246,30633734	30595143,30598897,30600049,30601200,30603122,30603572,30609730,30612245,30616058,30617278,30621500,30622462,30626319,30628669,30631541,30632437,30634033	1.000000
liver_male_adult_32_years	chr3	194247637	194247646	194247645	+	High_confidence	122	129	315	12.888682	6.121181	chr3	194247526	194247735	SINE|MIR|MIR	-	chr3	194247647	194257772	LINC02037|ENST00000455821.1	+	194247647,194249595,194255230,194257184	194247821,194249902,194255356,194257772	0.790476
liver_male_adult_32_years	chr2	230520928	230520951	230520945	+	RAMPAGE_only	21	21	56	2.291321	4.605516	chr2	230520655	230521096	LTR|ERV1|LTR44	-	chr2	230531469	230543122	STRG.22789.32	+	230531469,230536805,230540875,230541300,230541891,230542835	230536749,230539382,230540996,230541372,230542035,230543122	0.589286
liver_male_adult_32_years	chr7	76134260	76134285	76134284	-	RAMPAGE_only	8	8	22	0.900162	3.784184	chr7	76133955	76134671	LINE|L1|L1MD2	+	chr7	76064249	76135503	STRG.61631.2	-	76064249,76077105,76084328,76084806,76088063,76092062,76093296,76099439,76099897,76103812,76108230,76108434,76117722,76128619,76131987,76134208,76135218	76075318,76077295,76084418,76084953,76088216,76092166,76098166,76099514,76101414,76104275,76108309,76108762,76117889,76128782,76132176,76134403,76135503	0.863636
liver_male_adult_32_years	chr12	121857334	121857335	121857334	-	RAMPAGE_only	7	9	9	0.368248	2.725481	chr12	121857068	121857295	SINE|Alu|AluSx1	-	chr12	121839526	121858859	HPD|ENST00000289004.8	-	121839526,121839931,121843709,121846861,121847051,121848998,121849686,121854702,121856323,121856582,121857327,121857756,121858686,121858820	121839838,121840048,121843832,121846933,121847214,121849076,121849790,121854792,121856406,121856625,121857432,121857819,121858713,121858859	1.000000
liver_male_adult_32_years	chr7	17099711	17099758	17099757	+	High_confidence	9	9	23	0.941078	3.916127	chr7	17099547	17099907	LINE|RTE-BovB|MamRTE1	-	chr7	17099384	17105005	STRG.58802.1	+	17099384	17105005	0.695652
liver_male_adult_32_years	chr11	134467260	134467288	134467264	+	High_confidence	184	187	452	18.494236	5.340528	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134467276	134505661	STRG.89902.1	+	134467276,134467864,134469486,134482626,134504797	134467615,134467987,134480911,134482730,134505661	0.946903
liver_male_adult_32_years	chr5	23951343	23951360	23951359	+	High_confidence	4	4	12	0.490997	3.027169	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.833333
liver_male_adult_32_years	chr8	57582180	57582232	57582231	+	High_confidence	10	11	37	1.513909	4.107018	chr8	57581821	57582633	LTR|ERVL|MER21C	+	chr8	57582198	57592452	STRG.66958.1	+	57582198,57591479	57582329,57592452	0.810811
liver_male_adult_32_years	chr14	81427421	81427467	81427441	-	High_confidence	17	18	97	3.968896	4.476876	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.907216
liver_male_adult_32_years	chr15	45397283	45397371	45397345	-	High_confidence	28	36	110	4.500810	4.524355	chr15	45397083	45398013	LTR|ERVL|MER21C	+	chr15	45380499	45397346	GATM|ENST00000527933.2	-	45380499,45396166,45396921	45380559,45396253,45397346	0.972727
liver_male_adult_32_years	chr1	147173225	147173261	147173225	+	High_confidence	4	4	20	0.818329	3.984184	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	1.000000
liver_male_adult_32_years	chr8	143899712	143899776	143899743	+	High_confidence	7	11	50	2.045823	4.196670	chr8	143899717	143900011	LTR|ERVL-MaLR|MLT1I	-	chr8	143899663	143915329	STRG.71127.1	+	143899663	143915329	0.960000
liver_male_adult_32_years	chr2	182030747	182030774	182030773	+	High_confidence	8	8	16	0.654663	3.773557	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.875000
liver_male_adult_32_years	chr11	77175226	77175255	77175226	+	High_confidence	12	12	21	0.859245	4.201841	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.952381
liver_male_adult_32_years	chr16	82056441	82056449	82056441	+	High_confidence	178	203	442	18.085072	6.856638	chr16	82056434	82056642	LINE|L1|L1ME3A	+	chr16	82056452	82098341	HSD17B2|ENST00000568090.5	+	82056452,82068169,82070941,82090901,82098074	82056513,82068382,82071127,82091039,82098341	0.739819
liver_male_adult_32_years	chr7	99823524	99823525	99823524	+	High_confidence	174	198	240	9.819948	5.447530	chr7	99822867	99824498	LTR|ERV1|MER52A	+	chr7	99823740	99824416	STRG.62434.1	+	99823740	99824416	0.912500
liver_male_adult_32_years	chr9	128684459	128684493	128684459	-	High_confidence	13	15	65	2.659569	5.072124	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128678805	128684512	STRG.77116.6	-	128678805	128684512	0.907692
liver_male_adult_32_years	chr17	2975658	2975665	2975660	+	RAMPAGE_only	5	7	14	0.572830	3.521641	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.928571
liver_male_adult_32_years	chr2	37466802	37466844	37466843	+	High_confidence	13	14	69	2.823235	4.928854	chr2	37466411	37467274	LINE|L1|L1ME2	-	chr2	37466792	37482745	STRG.14234.1	+	37466792	37482745	0.695652
liver_male_adult_32_years	chr1	160263333	160263373	160263333	-	High_confidence	309	315	1340	54.828045	5.776006	chr1	160263175	160263341	LINE|L2|L2a	+	chr1	160215714	160262560	DCAF8|NM_015726.3	-	160215714,160218323,160218848,160222650,160224441,160225061,160225590,160231296,160237134,160238606,160239696,160243959,160261284,160262448	160217708,160218440,160218968,160222781,160224549,160225119,160225663,160231407,160237229,160238747,160240370,160244034,160261358,160262560	0.988060
liver_male_adult_32_years	chr3	188003425	188003444	188003428	-	High_confidence	3	4	10	0.409165	2.725481	chr3	188003354	188003555	DNA|hAT-Blackjack|MER63A	+	chr3	188001699	188003406	AC092941.2|ENST00000444379.1	-	188001699,188003278	188002579,188003406	0.700000
liver_male_adult_32_years	chr8	17890901	17890920	17890901	-	High_confidence	5	6	12	0.490997	3.418296	chr8	17890609	17890983	LTR|ERVL-MaLR|THE1C	-	chr8	17864583	17891809	FGL1|ENST00000518650.5	-	17864583,17868547,17868915,17874018,17874361,17881998,17885491,17891680	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891809	0.500000
liver_male_adult_32_years	chr13	48492734	48492790	48492783	-	High_confidence	31	31	79	3.232400	5.586550	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.822785
liver_male_adult_32_years	chr14	28281406	28281407	28281406	-	High_confidence	7	7	9	0.368248	2.725481	chr14	28281369	28281592	SINE|MIR|MIRc	+	chr14	28254121	28281429	STRG.100258.1	-	28254121,28281308	28265267,28281429	0.555556
liver_male_adult_32_years	chr22	37849302	37849333	37849317	-	High_confidence	26	27	96	3.927979	4.933718	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.968750
liver_male_adult_32_years	chr1	200298329	200298403	200298402	-	High_confidence	28	49	117	4.787225	5.525781	chr1	200297863	200298573	LINE|L2|L2c	+	chr1	200297463	200298770	STRG.9788.1	-	200297463	200298770	0.940171
liver_male_adult_32_years	chr2	218322226	218322255	218322232	-	High_confidence	7	7	27	1.104744	4.243856	chr2	218321932	218322221	SINE|Alu|AluSp	-	chr2	218305736	218322260	STRG.22280.19	-	218305736,218309976,218321217,218321998	218306548,218310161,218321411,218322260	0.925926
liver_male_adult_32_years	chr10	95437804	95437816	95437815	-	RAMPAGE_only	6	6	13	0.531914	3.026987	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95399016	95422073	SORBS1|ENST00000486141.3	-	95399016,95406117,95410632,95415468,95421960	95399189,95406147,95410777,95416185,95422073	0.692308
liver_male_adult_32_years	chr7	150769823	150769852	150769851	-	RAMPAGE_only	13	16	56	2.291321	4.918526	chr7	150769734	150770037	SINE|Alu|AluJr	+	chr7	150758710	150772633	STRG.64517.3	-	150758710,150766311	150765970,150772633	1.000000
liver_male_adult_32_years	chr13	49495740	49495744	49495740	+	High_confidence	2	2	6	0.245499	2.584963	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495664	49518060	PHF11|ENST00000481509.5	+	49495664,49513058,49518017	49496095,49513166,49518060	0.833333
liver_male_adult_32_years	chr3	52800611	52800641	52800635	+	RAMPAGE_only	2	2	8	0.327332	2.807355	chr3	52800685	52800758	SINE|MIR|MIR1_Amn	+	chr3	52802203	52802806	ITIH3|ENST00000465314.5	+	52802203,52802666	52802519,52802806	0.750000
liver_male_adult_32_years	chr11	17282887	17282934	17282887	+	RAMPAGE_only	3	4	16	0.654663	3.773557	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.500000
liver_male_adult_32_years	chr2	216572641	216572645	216572644	-	RAMPAGE_only	4	5	8	0.327332	2.750000	chr2	216572472	216572653	DNA|hAT-Charlie|Charlie15a	-	chr2	216558270	216559626	STRG.22130.1	-	216558270,216559484	216558545,216559626	0.625000
liver_male_adult_32_years	chr12	102342896	102342897	102342896	+	RAMPAGE_only	15	15	22	0.900162	4.011365	chr12	102342881	102343168	SINE|Alu|AluJo	-	chr12	102197584	102402596	HELLPAR|ENST00000626826.1	+	102197584	102402596	0.954545
liver_male_adult_32_years	chr7	35648461	35648474	35648461	-	RAMPAGE_only	10	10	30	1.227494	2.978095	chr7	35648430	35648540	DNA|hAT-Blackjack|MER63B	+	chr7	35634311	35668579	HERPUD2|ENST00000426180.1	-	35634311,35635134,35638349,35667433,35668542	35634429,35635458,35638472,35667588,35668579	0.933333
liver_male_adult_32_years	chr6	137724161	137724185	137724172	-	RAMPAGE_only	11	12	47	1.923073	3.815721	chr6	137724061	137724183	LINE|L2|L2b	-	chr6	137719072	137719520	STRG.56244.1	-	137719072	137719520	0.872340
liver_male_adult_32_years	chr15	89133449	89133457	89133449	+	RAMPAGE_only	4	4	9	0.368248	3.000000	chr15	89133190	89133834	LINE|L1|L1MC5	-	chr15	89116503	89183373	ABHD2|ENST00000562073.1	+	89116503,89151676,89155366,89175811,89183331	89116521,89151852,89155534,89175995,89183373	0.888889
liver_male_adult_32_years	chr11	57425857	57425870	57425857	-	High_confidence	3	3	8	0.327332	2.521641	chr11	57425746	57425858	LINE|CR1|L3	-	chr11	57417879	57425856	SLC43A3|ENST00000529113.5	-	57417879,57420971,57421296,57423981,57425540	57417887,57421064,57421373,57424028,57425856	0.625000
liver_male_adult_32_years	chr7	101217578	101217595	101217578	-	High_confidence	6	7	13	0.531914	3.418296	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.923077
liver_male_adult_32_years	chr17	79733243	79733260	79733243	-	High_confidence	17	19	57	2.332238	5.350262	chr17	79733061	79733306	LINE|L1|L1ME4b	-	chr17	79708492	79733247	STRG.117527.1	-	79708492,79732528	79708973,79733247	1.000000
liver_male_adult_32_years	chr4	68948114	68948115	68948114	-	RAMPAGE_only	13	14	18	0.736496	3.499228	chr4	68946743	68948416	DNA|TcMar-Tigger|Tigger1	-	chr4	68929449	68951361	UGT2A3|ENST00000503012.1	-	68929449,68930545,68931154,68932627,68943281,68945305,68951045	68930092,68930765,68931242,68932759,68943378,68945454,68951361	0.944444
liver_male_adult_32_years	chr9	125486203	125486245	125486231	-	RAMPAGE_only	4	4	19	0.777413	3.471354	chr9	125486101	125486249	SINE|MIR|MIRb	-	chr9	125438468	125471905	MAPKAP1|ENST00000483937.5	-	125438468,125444500,125467971,125471082	125439012,125444598,125468109,125471905	0.894737
liver_male_adult_32_years	chr7	76109074	76109092	76109091	-	High_confidence	11	11	35	1.432076	4.822001	chr7	76108929	76109272	LTR|ERV1|MER61A	-	chr7	76090430	76108779	GTF2IP7|ENST00000434037.1	-	76090430,76093296,76099439,76099897,76108230,76108434	76092166,76093401,76099514,76099956,76108309,76108779	0.742857
liver_male_adult_32_years	chr1	155637559	155637604	155637559	-	High_confidence	29	29	104	4.255311	4.698038	chr1	155637451	155637661	LTR|ERV1|LTR12F	-	chr1	155626712	155637642	STRG.7774.2	-	155626712,155637393	155634846,155637642	0.884615
liver_male_adult_32_years	chr11	74697518	74697561	74697560	-	High_confidence	2	2	9	0.368248	3.000000	chr11	74697389	74697636	LINE|L2|L2c	+	chr11	74696428	74697694	CHRDL2|ENST00000529912.5	-	74696428,74697204,74697600	74696585,74697297,74697694	0.666667
liver_male_adult_32_years	chr10	45000503	45000524	45000503	+	High_confidence	13	13	35	1.432076	4.597276	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.942857
liver_male_adult_32_years	chr4	94564521	94564522	94564521	+	RAMPAGE_only	7	7	11	0.450081	2.921928	chr4	94564272	94564647	LINE|L2|L2a	+	chr4	94489034	94575938	PDLIM5|ENST00000510099.5	+	94489034,94523723,94573350,94575615	94489070,94523875,94573393,94575938	0.545455
liver_male_adult_32_years	chr11	58940285	58940343	58940311	+	High_confidence	16	21	97	3.968896	5.079172	chr11	58939816	58940740	LTR|ERV1|LOR1-int	+	chr11	58939483	58955313	STRG.85773.6	+	58939483,58943542,58947045,58947857,58954769,58955175	58939650,58943666,58947165,58947965,58954896,58955313	0.525773
liver_male_adult_32_years	chr19	45280132	45280135	45280132	+	High_confidence	5	5	10	0.409165	2.846439	chr19	45280066	45280316	SINE|Alu|AluJb	+	chr19	45280144	45287664	MARK4|ENST00000590897.1	+	45280144,45280574,45287446	45280483,45280734,45287664	0.700000
liver_male_adult_32_years	chr19	44906695	44906748	44906719	+	High_confidence	11	11	31	1.268410	3.883337	chr19	44906740	44906855	SINE|MIR|MIRc	+	chr19	44905811	44908944	STRG.123753.39	+	44905811,44906601,44908532	44905841,44907952,44908944	0.935484
liver_male_adult_32_years	chr5	75336486	75336515	75336495	+	High_confidence	3	4	11	0.450081	3.121928	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.818182
liver_male_adult_32_years	chr17	40352946	40353023	40352983	-	High_confidence	5	5	28	1.145661	3.967720	chr17	40352960	40353143	LINE|L2|L2c	-	chr17	40351551	40352999	STRG.115394.1	-	40351551	40352999	0.964286
liver_male_adult_32_years	chr13	40350408	40350446	40350410	-	High_confidence	83	99	218	8.919786	6.523659	chr13	40350403	40350604	SINE|MIR|MIR3	+	chr13	40078802	40350462	STRG.97609.1	-	40078802,40094535,40095418,40097856,40119462,40134425,40200822,40204327,40217577,40290878,40295544	40093170,40094632,40095517,40117140,40134359,40199209,40200891,40207052,40290855,40295183,40350462	1.000000
liver_male_adult_32_years	chr17	40551503	40551561	40551560	+	High_confidence	4	4	28	1.145661	4.469670	chr17	40551498	40551630	SINE|MIR|MIR3	+	chr17	40551282	40552458	STRG.115406.1	+	40551282	40552458	0.892857
liver_male_adult_32_years	chr16	48243496	48243518	48243503	+	High_confidence	3	3	14	0.572830	2.873141	chr16	48243425	48243684	LINE|L1|L1MC4a	+	chr16	48244166	48353979	LONP2|NM_031490.3	+	48244166,48252130,48256609,48258617,48261423,48262777,48270015,48277337,48296014,48299661,48303171,48334215,48347506,48348099,48351580	48244621,48252365,48256741,48258740,48261587,48262872,48270274,48277479,48296165,48299788,48303305,48334358,48347714,48348290,48353979	0.928571
liver_male_adult_32_years	chr17	59729702	59729725	59729704	+	High_confidence	3	5	15	0.613747	3.521641	chr17	59729673	59729983	SINE|Alu|AluSq2	-	chr17	59729714	59737517	VMP1|ENST00000587259.5	+	59729714,59731420,59735337,59737452	59730017,59731522,59735473,59737517	0.800000
liver_male_adult_32_years	chr11	95794288	95794388	95794387	+	RAMPAGE_only	9	9	76	3.109650	5.433792	chr11	95794328	95794625	LINE|L1|L1M5	-	chr11	95795541	95832691	CEP57|ENST00000541150.5	+	95795541,95799231,95812931,95813467,95817786,95818826,95821870,95822498,95827785,95829186,95831025	95795559,95799388,95813111,95813589,95817903,95818904,95821978,95822576,95828027,95829331,95832691	0.855263
liver_male_adult_32_years	chr4	155854731	155854768	155854731	+	High_confidence	12	13	44	1.800324	4.942275	chr4	155854636	155855164	LTR|ERVL|MLT2F	+	chr4	155854770	155876718	STRG.40429.9	+	155854770	155876718	0.954545
liver_male_adult_32_years	chr19	44914321	44914322	44914321	+	High_confidence	52	57	61	2.495904	5.139736	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.672131
liver_male_adult_32_years	chr11	47498209	47498210	47498209	-	RAMPAGE_only	8	8	11	0.450081	3.321928	chr11	47498169	47498421	SINE|Alu|AluJr	+	chr11	47465936	47494521	CELF1|NM_198700.2	-	47465936,47472190,47473087,47475335,47476845,47477296,47478876,47482694,47483452,47484388,47486749,47487158,47488836,47494330	47468891,47472357,47473231,47475521,47476959,47477425,47478940,47482856,47483532,47484523,47486798,47487241,47489024,47494521	0.727273
liver_male_adult_32_years	chr2	27162328	27162363	27162328	+	High_confidence	5	5	20	0.818329	3.426367	chr2	27162224	27162332	LTR|ERV1|LTR23	+	chr2	27162601	27163073	STRG.13885.1	+	27162601	27163073	0.800000
liver_male_adult_32_years	chr8	94961947	94962006	94962005	-	High_confidence	9	10	22	0.900162	4.070656	chr8	94961865	94961989	DNA|hAT-Charlie|MER5A	-	chr8	94958731	94962010	STRG.68583.1	-	94958731	94962010	0.863636
liver_male_adult_32_years	chr11	58578102	58578156	58578102	-	High_confidence	25	26	117	4.787225	5.280037	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58527038	58578166	STRG.85691.6	-	58527038,58549785,58549972,58554840,58564154,58570555,58575759	58528191,58549867,58551232,58554940,58564201,58570713,58578166	0.965812
liver_male_adult_32_years	chr7	80374529	80374561	80374560	-	High_confidence	4	4	14	0.572830	3.378783	chr7	80374347	80374986	LINE|RTE-X|L4_B_Mam	+	chr7	80371920	80374469	AC004862.1|ENST00000605580.1	-	80371920,80373811,80374340	80372294,80373990,80374469	0.928571
liver_male_adult_32_years	chr16	53445773	53445794	53445780	+	High_confidence	2	2	9	0.368248	2.750000	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.666667
liver_male_adult_32_years	chr15	30624357	30624365	30624357	+	High_confidence	6	6	19	0.777413	3.572431	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.684211
liver_male_adult_32_years	chr18	42159395	42159405	42159404	+	RAMPAGE_only	308	311	584	23.895208	6.470967	chr18	42159347	42159550	SINE|MIR|MIR3	-	chr18	42033841	42226104	STRG.119340.5	+	42033841,42037691,42038780,42040676,42043732,42049530,42057882,42064739,42067387,42159422,42225963	42033957,42037820,42038850,42040741,42043817,42049605,42058051,42064830,42067513,42186762,42226104	0.571918
liver_male_adult_32_years	chr21	38907018	38907065	38907064	-	High_confidence	15	15	72	2.945985	5.440351	chr21	38906916	38907046	SINE|MIR|MIR3	-	chr21	38906431	38907068	STRG.129066.7	-	38906431	38907068	0.722222
liver_male_adult_32_years	chr9	94640260	94640285	94640284	-	High_confidence	42	58	173	7.078546	6.338316	chr9	94640267	94640989	LINE|L2|L2a	-	chr9	94603140	94640249	STRG.75044.3	-	94603140,94605456,94606814,94609920,94617767,94620328,94639140,94639558	94603572,94605576,94606952,94610061,94617860,94620491,94639298,94640249	0.942197
liver_male_adult_32_years	chr7	150323801	150323811	150323810	-	High_confidence	3	3	8	0.327332	2.521641	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	0.875000
liver_male_adult_32_years	chr19	38763375	38763407	38763406	-	High_confidence	35	38	68	2.782319	4.910478	chr19	38763152	38763455	SINE|Alu|AluSx1	+	chr19	38730677	38763643	STRG.123150.6	-	38730677,38730964,38731106,38733702,38734141,38734318,38734812,38735369,38736109,38736551,38737155,38737474,38738272,38738417,38738573,38740050,38741776,38742409,38743032,38743620,38761172	38730878,38731023,38731223,38733940,38734204,38734389,38734870,38735544,38736318,38736563,38737388,38737638,38738347,38738503,38738648,38740219,38741910,38742528,38743473,38744446,38763643	0.985294
liver_male_adult_32_years	chr4	68668631	68668635	68668634	-	RAMPAGE_only	33	37	54	2.209488	3.150248	chr4	68668491	68668867	LTR|ERVL-MaLR|THE1D	+	chr4	68646629	68670628	UGT2B15|ENST00000338206.5	-	68646629,68654036,68655094,68663007,68668039,68669894	68647383,68654256,68655182,68663139,68668188,68670628	0.981481
liver_male_adult_32_years	chr19	38763960	38763975	38763960	-	High_confidence	12	17	55	2.250405	4.582958	chr19	38763767	38764088	LINE|L1|L1ME2	+	chr19	38730677	38763643	STRG.123150.6	-	38730677,38730964,38731106,38733702,38734141,38734318,38734812,38735369,38736109,38736551,38737155,38737474,38738272,38738417,38738573,38740050,38741776,38742409,38743032,38743620,38761172	38730878,38731023,38731223,38733940,38734204,38734389,38734870,38735544,38736318,38736563,38737388,38737638,38738347,38738503,38738648,38740219,38741910,38742528,38743473,38744446,38763643	0.909091
liver_male_adult_32_years	chr3	9986881	9986905	9986904	+	RAMPAGE_only	4	5	10	0.409165	3.121928	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9985775	9989813	STRG.24169.1	+	9985775	9989813	0.900000
liver_male_adult_32_years	chr3	146222301	146222319	146222318	-	High_confidence	19	21	78	3.191483	5.046135	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146206586	146222371	PLSCR4|ENST00000498625.1	-	146206586,146220814,146222064	146206761,146220925,146222371	0.935897
liver_male_adult_32_years	chrX	69619227	69619228	69619227	+	High_confidence	5	5	8	0.327332	2.807355	chrX	69619260	69619435	LINE|CR1|CR1_Mam	+	chrX	69618356	69620265	STRG.134686.1	+	69618356	69620265	0.750000
liver_male_adult_32_years	chrX	7147267	7147288	7147287	+	High_confidence	9	9	23	0.941078	3.931838	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.739130
liver_male_adult_32_years	chr6	31587009	31587021	31587009	+	High_confidence	11	15	29	1.186577	4.182006	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.896552
liver_male_adult_32_years	chr4	18155309	18155319	18155309	+	High_confidence	6	6	13	0.531914	3.180833	chr4	18155154	18155683	LTR|ERVL-MaLR|MLT1E1	+	chr4	18155324	18162383	STRG.35242.1	+	18155324,18157038	18156692,18162383	1.000000
liver_male_adult_32_years	chr4	153819424	153819425	153819424	+	RAMPAGE_only	10	11	11	0.450081	2.845351	chr4	153818041	153821399	LINE|L1|L1PA10	+	chr4	154562955	154571086	FGB|ENST00000302068.8	+	154562955,154565807,154566488,154567592,154568380,154569181,154569513,154570418	154563132,154565999,154566672,154567820,154568494,154569307,154569799,154571086	1.000000
liver_male_adult_32_years	chr10	17891768	17891834	17891768	+	RAMPAGE_only	103	113	276	11.292941	6.953489	chr10	17891627	17892603	LINE|L1|L1MCa	-	chr10	17809343	17911170	MRC1|ENST00000569591.2	+	17809343,17823073,17827541,17833674,17840692,17845288,17849578,17852966,17856241,17861386,17863533,17866561,17870245,17870847,17871981,17873783,17875089,17877899,17879720,17880524,17881066,17885268,17894209,17898033,17900787,17901972,17906885,17907533,17909305,17910214	17809526,17823475,17827715,17833839,17840806,17845435,17849764,17853124,17856352,17861502,17863682,17866761,17870373,17870935,17872126,17873825,17875253,17877967,17879821,17880670,17881181,17885435,17894312,17898266,17900953,17902122,17906999,17907698,17909347,17911170	0.717391
liver_male_adult_32_years	chr2	121756510	121756548	121756510	+	High_confidence	4	4	12	0.490997	3.022055	chr2	121756508	121756618	LINE|L2|L2a	+	chr2	121756170	121765661	TSN|ENST00000409193.1	+	121756170,121757239,121758709,121761408,121763004,121765133	121756691,121757333,121758806,121761524,121763084,121765661	1.000000
liver_male_adult_32_years	chrX	106716691	106716704	106716703	+	RAMPAGE_only	13	15	34	1.391159	4.150159	chrX	106716671	106716865	LINE|L2|L2c	-	chrX	106726663	106796993	RNF128|ENST00000255499.2	+	106726663,106772912,106785064,106787917,106790185,106791065,106795579	106727397,106773160,106785136,106788000,106790282,106791234,106796993	0.823529
liver_male_adult_32_years	chr18	22873283	22873336	22873283	-	High_confidence	25	30	88	3.600648	5.298762	chr18	22872875	22873256	LTR|ERVL-MaLR|MSTA	-	chr18	22666004	22873331	STRG.118530.7	-	22666004,22704820,22872957	22699663,22704920,22873331	0.715909
liver_male_adult_32_years	chr1	43248038	43248098	43248038	-	RAMPAGE_only	146	162	311	12.725016	5.489840	chr1	43247843	43248160	SINE|Alu|AluY	+	chr1	43194683	43250391	EBNA1BP2|ENST00000474566.1	-	43194683,43206345,43211449,43215265,43250218	43194949,43206392,43211567,43215393,43250391	0.540193
liver_male_adult_32_years	chr2	73072182	73072210	73072193	-	High_confidence	5	6	19	0.777413	3.787144	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.736842
liver_male_adult_32_years	chr11	64242486	64242556	64242555	+	High_confidence	5	8	35	1.432076	4.593429	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
liver_male_adult_32_years	chr1	54865648	54865688	54865666	-	RAMPAGE_only	23	26	113	4.623559	4.766950	chr1	54865506	54865684	SINE|MIR|MIRc	-	chr1	54852366	54886836	DHCR24|ENST00000647585.1	-	54852366,54853433,54854036,54865302,54871349,54875092,54875941,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54883773,54886836	0.964602
liver_male_adult_32_years	chr4	141332616	141332617	141332616	-	High_confidence	340	342	355	14.525340	4.257686	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.954930
liver_male_adult_32_years	chr21	8850001	8850025	8850024	+	RAMPAGE_only	5	5	17	0.695580	3.219528	chr21	8850073	8850241	SINE|MIR|MIRb	+	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	0.941176
liver_male_adult_32_years	chr7	107580245	107580267	107580264	+	High_confidence	890	892	4350	177.986564	6.500840	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.969425
liver_male_adult_32_years	chr10	94682948	94682986	94682985	+	High_confidence	519	526	877	35.883728	6.976645	chr10	94682598	94683114	LTR|ERV1|MER61D	-	chr10	94682870	94735574	STRG.81691.6	+	94682870,94687769,94688124,94694916,94706783,94720395,94724345,94733296	94683987,94687932,94688274,94695077,94706960,94720537,94724533,94735574	0.987457
liver_male_adult_32_years	chr1	38985760	38985771	38985770	-	High_confidence	14	14	24	0.981995	3.740953	chr1	38985463	38985797	LINE|L2|L2c	+	chr1	38978060	38985836	STRG.2021.1	-	38978060,38985530	38978545,38985836	0.708333
liver_male_adult_32_years	chr7	99650527	99650530	99650529	-	RAMPAGE_only	7	11	12	0.490997	2.663533	chr7	99650465	99650681	DNA|TcMar-Tigger|MamRep137	-	chr7	99648197	99676576	CYP3A5|ENST00000469887.5	-	99648197,99650072,99652552,99660498,99662815,99665165,99666600,99666951,99672579,99672783,99674532,99676114	99648400,99650232,99652779,99660659,99664095,99665314,99666689,99667065,99672698,99672915,99674585,99676576	0.916667
liver_male_adult_32_years	chr13	99496779	99496812	99496779	-	High_confidence	3	3	16	0.654663	3.773557	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.562500
liver_male_adult_32_years	chr14	77076188	77076194	77076188	-	High_confidence	21	21	62	2.536820	5.379847	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77071290	77076355	STRG.103326.1	-	77071290,77076104	77074598,77076355	0.645161
liver_male_adult_32_years	chr20	24930628	24930678	24930639	+	High_confidence	19	19	122	4.991807	5.722086	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930645	24932983	STRG.125930.1	+	24930645,24931346	24930774,24932983	0.983607
liver_male_adult_32_years	chr5	113105918	113105924	113105918	-	RAMPAGE_only	4	4	9	0.368248	2.750000	chr5	113105908	113106075	DNA|hAT-Charlie|MER5B	+	chr5	113101542	113104625	MCC|ENST00000505604.1	-	113101542,113104191	113101945,113104625	0.666667
liver_male_adult_32_years	chr4	185712313	185712320	185712313	-	RAMPAGE_only	3	3	8	0.327332	2.521641	chr4	185712022	185712863	LTR|ERV1|LTR1D	+	chr4	185677347	185690599	SORBS2|ENST00000421420.5	-	185677347,185678422,185678795,185684753,185690561	185677638,185678547,185678822,185684846,185690599	0.500000
liver_male_adult_32_years	chr3	120596753	120596764	120596753	-	High_confidence	5	5	12	0.490997	3.277613	chr3	120596706	120596936	SINE|MIR|MIR	+	chr3	120590626	120596752	STRG.29515.2	-	120590626	120596752	0.583333
liver_male_adult_32_years	chr5	95852231	95852232	95852231	+	High_confidence	2308	2311	2434	99.590643	4.852341	chr5	95850982	95852649	LTR|ERV1|LTR12C	+	chr5	95852231	95860133	LINC01554|ENST00000436592.5	+	95852231,95852791,95856877,95858803	95852714,95852926,95856981,95860133	0.990961
liver_male_adult_32_years	chr5	42825888	42825898	42825897	-	High_confidence	21	40	84	3.436982	5.563383	chr5	42825250	42825999	LTR|ERV1|LTR1F	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.940476
liver_male_adult_32_years	chr7	45690595	45690601	45690595	+	High_confidence	722	723	1142	46.726588	7.135206	chr7	45690403	45690618	LTR|ERVL|LTR33	-	chr7	45690586	45711829	STRG.60436.5	+	45690586,45700432,45703599,45708349,45711652	45700375,45703492,45704616,45711622,45711829	0.979860
liver_male_adult_32_years	chr2	200588213	200588222	200588221	+	High_confidence	6	7	13	0.531914	2.653544	chr2	200587906	200588390	LINE|L2|L2a	-	chr2	200588173	200603297	AOX1|ENST00000454629.1	+	200588173,200593145,200595271,200597396,200599619,200602283,200603266	200588270,200593203,200595368,200597505,200599746,200602345,200603297	1.000000
liver_male_adult_32_years	chr1	183590910	183590911	183590910	-	High_confidence	7	7	8	0.327332	2.521641	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.750000
liver_male_adult_32_years	chr18	80148048	80148049	80148048	+	High_confidence	46	48	51	2.086739	5.226251	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.568627
liver_male_adult_32_years	chr1	1721672	1721673	1721672	-	High_confidence	5	6	8	0.327332	2.807355	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.750000
liver_male_adult_32_years	chr19	40280810	40280832	40280831	-	High_confidence	19	19	34	1.391159	4.304229	chr19	40280545	40281038	LINE|L2|L2a	+	chr19	40242039	40280832	AKT2|ENST00000486368.6	-	40242039,40242533,40255157,40256925,40265221,40280781	40242069,40242687,40255269,40257054,40265351,40280832	0.852941
liver_male_adult_32_years	chr19	33395177	33395205	33395177	-	High_confidence	3	4	10	0.409165	2.921928	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	1.000000
liver_male_adult_32_years	chr6	31186084	31186159	31186117	-	High_confidence	55	56	153	6.260217	5.898154	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31164600	31186572	STRG.51600.2	-	31164600,31165127,31165570,31165926,31171713	31164867,31165286,31165701,31171680,31186572	0.986928
liver_male_adult_32_years	chr5	147188432	147188465	147188451	-	RAMPAGE_only	10	11	48	1.963990	4.706199	chr5	147188358	147188647	LTR|Gypsy|MamGypLTR1a	+	chr5	147183368	147184309	STRG.48232.1	-	147183368	147184309	0.979167
liver_male_adult_32_years	chr7	11194708	11194730	11194708	+	High_confidence	92	96	307	12.561351	5.687480	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11194703	11285890	STRG.58389.4	+	11194703,11197309,11244257,11248292	11194784,11197444,11244479,11285890	0.661238
liver_male_adult_32_years	chr8	22392851	22392884	22392883	+	High_confidence	9	9	18	0.736496	3.852169	chr8	22392932	22392982	LINE|L2|L2b	+	chr8	22392829	22404870	SLC39A14|ENST00000520832.1	+	22392829,22404695	22393232,22404870	0.888889
liver_male_adult_32_years	chr14	94657907	94657908	94657907	-	RAMPAGE_only	21	26	26	1.063828	4.180833	chr14	94657425	94658900	Retroposon|SVA|SVA_C	+	chr14	94378375	94390693	SERPINA1|ENST00000393088.8	-	94378375,94379463,94380870,94382591,94388559,94388800,94390456	94378640,94379611,94381141,94383241,94388663,94389010,94390693	1.000000
liver_male_adult_32_years	chr13	46121235	46121238	46121237	-	RAMPAGE_only	57	80	88	3.600648	5.492926	chr13	46121221	46121392	DNA|hAT-Charlie|MER5B	+	chr13	46053186	46105076	CPB2|NM_001278541.1	-	46053186,46055761,46058178,46064647,46073872,46078799,46082440,46084218,46087744,46104935	46053798,46055849,46058381,46064741,46073977,46078901,46082549,46084343,46087820,46105076	0.590909
liver_male_adult_32_years	chr6	52787980	52788028	52787997	-	High_confidence	2	2	12	0.490997	2.913977	chr6	52787950	52788368	LTR|ERV1|MER65A	+	chr6	52774881	52787999	STRG.52802.1	-	52774881,52783768,52787655	52782420,52783940,52787999	0.583333
liver_male_adult_32_years	chr12	124831720	124831746	124831745	-	RAMPAGE_only	8	10	22	0.900162	3.880180	chr12	124831708	124831761	SINE|MIR|MIR	+	chr12	124785819	124817707	SCARB1|ENST00000544327.1	-	124785819,124787405,124795194,124800123,124807760,124810173,124811869,124814201,124814972,124817549	124786503,124787457,124795268,124800242,124807927,124810289,124811965,124814405,124815114,124817707	0.954545
liver_male_adult_32_years	chr11	111791802	111791833	111791832	-	RAMPAGE_only	3	5	15	0.613747	3.235926	chr11	111791809	111792097	SINE|Alu|AluSz	+	chr11	111786285	111809690	ALG9|ENST00000525910.1	-	111786285,111798093,111809642	111786520,111798195,111809690	0.666667
liver_male_adult_32_years	chr12	57431737	57431769	57431753	+	High_confidence	3	3	14	0.572830	2.777363	chr12	57431709	57431798	LINE|L2|L2c	-	chr12	57431115	57433935	AC126614.1|ENST00000547552.1	+	57431115,57433702	57431430,57433935	0.642857
liver_male_adult_32_years	chr6	154441500	154441541	154441525	-	RAMPAGE_only	15	17	84	3.436982	5.924506	chr6	154441482	154441660	SINE|Alu|AluSx	-	chr6	154405462	154434073	CNKSR3|ENST00000433165.6	-	154405462,154410342,154410933,154414298,154422505,154422914,154428127,154430471,154433465,154433778	154406652,154410432,154411142,154414423,154422652,154422983,154428187,154430591,154433507,154434073	0.702381
liver_male_adult_32_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	71	71	71	2.905068	4.143041	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
liver_male_adult_32_years	chr3	46558627	46558629	46558628	+	RAMPAGE_only	3	6	8	0.327332	3.000000	chr3	46558357	46558849	LINE|L1|L1MEf	-	chr3	46557397	46559688	LRRC2-AS1|ENST00000599511.1	+	46557397	46559688	0.750000
liver_male_adult_32_years	chr5	32204319	32204329	32204319	+	High_confidence	2	2	7	0.286415	2.584963	chr5	32203734	32204502	LTR|ERVL|MER54A	+	chr5	32204286	32207976	STRG.42427.1	+	32204286,32207591	32204602,32207976	0.571429
liver_male_adult_32_years	chr8	20570820	20570877	20570876	+	High_confidence	46	52	107	4.378060	5.938512	chr8	20570677	20571078	LTR|ERVL|MLT2A1	+	chr8	20570809	20962895	STRG.65790.1	+	20570809,20664833,20790445,20897374,20915969,20937247,20938653,20942941,20945959,20948698,20950086,20952775,20953840,20955684,20962780	20571033,20664906,20790556,20897435,20916158,20937355,20938838,20943252,20946129,20948793,20950249,20952934,20954075,20955834,20962895	0.598131
liver_male_adult_32_years	chr6	11867724	11867725	11867724	-	High_confidence	7	8	11	0.450081	2.921928	chr6	11867202	11867763	DNA|hAT-Tip100|Zaphod	-	chr6	11826378	11868615	STRG.50457.3	-	11826378,11830813,11865597,11868105	11827862,11862845,11865659,11868615	0.818182
liver_male_adult_32_years	chr10	97561127	97561174	97561152	-	High_confidence	7	7	25	1.022911	4.053509	chr10	97560441	97561325	LTR|ERV1|Harlequin-int	-	chr10	97560204	97561169	STRG.81882.1	-	97560204	97561169	0.840000
liver_male_adult_32_years	chr19	47289917	47289991	47289917	+	High_confidence	40	40	183	7.487711	5.373058	chr19	47289949	47290265	LINE|L1|L1M1	+	chr19	47290022	47321943	STRG.123904.2	+	47290022,47291977,47296599,47298441,47300806,47307724,47319780	47290061,47292173,47297192,47299017,47307510,47309898,47321943	0.803279
liver_male_adult_32_years	chr7	90718089	90718122	90718121	+	RAMPAGE_only	3	3	9	0.368248	2.750000	chr7	90718060	90718155	DNA|hAT-Charlie|MER20B	+	chr7	90709861	90955793	CDK14|ENST00000431029.5	+	90709861,90726566,90790572,90863174,90899290,90917600,90955696	90709957,90726812,90790652,90863269,90899353,90917724,90955793	0.888889
liver_male_adult_32_years	chr1	9239713	9239876	9239843	+	High_confidence	80	82	642	26.268362	7.081448	chr1	9239801	9239853	LINE|Penelope|Penelope1_Vert	+	chr1	9239843	9271337	H6PD|NM_001282587.1	+	9239843,9244924,9246965,9262058,9263508	9240018,9245561,9247083,9262328,9271337	0.707165
liver_male_adult_32_years	chr22	31215441	31215442	31215441	+	RAMPAGE_only	4	4	6	0.245499	2.584963	chr22	31215345	31215601	SINE|MIR|MIR3	-	chr22	31212294	31266132	STRG.130515.13	+	31212294,31225719,31258290,31259888,31262133,31262594,31265945	31212424,31225819,31259230,31260077,31262239,31262791,31266132	0.666667
liver_male_adult_32_years	chr2	230521669	230521694	230521693	+	RAMPAGE_only	3	3	9	0.368248	2.750000	chr2	230521676	230522041	LTR|ERV1|LOR1-int	+	chr2	230531469	230543122	STRG.22789.32	+	230531469,230536805,230540875,230541300,230541891,230542835	230536749,230539382,230540996,230541372,230542035,230543122	0.777778
liver_male_adult_32_years	chrX	5726324	5726325	5726324	-	High_confidence	68	77	98	4.009812	5.227526	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5719073	5726316	STRG.131675.1	-	5719073,5725929	5719872,5726316	0.989796
liver_male_adult_32_years	chr8	99892041	99892057	99892056	-	RAMPAGE_only	11	11	36	1.472992	4.294653	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
liver_male_adult_32_years	chr16	87381459	87381470	87381469	-	RAMPAGE_only	20	21	37	1.513909	4.815623	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87330810	87383748	STRG.112954.2	-	87330810,87333885,87335303,87336154,87342876,87343597,87347173,87358410,87360294,87364803,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87358497,87364494,87367945,87383748	0.810811
liver_male_adult_32_years	chr13	46797871	46797917	46797882	+	RAMPAGE_only	14	14	64	2.618653	4.560847	chr13	46797890	46797957	DNA|hAT-Tip100|MER45R	+	chr13	46836109	46849538	STRG.97878.2	+	46836109	46849538	0.546875
liver_male_adult_32_years	chr9	133602390	133602414	133602411	-	High_confidence	7	7	20	0.818329	3.721928	chr9	133602245	133602376	SINE|MIR|MIR	-	chr9	133577284	133602475	STRG.77476.2	-	133577284,133580130,133599167	133579429,133580246,133602475	1.000000
liver_male_adult_32_years	chr1	11992174	11992196	11992195	+	RAMPAGE_only	9	10	23	0.941078	3.584012	chr1	11992159	11992392	SINE|MIR|MIR	-	chr1	11991178	12013508	STRG.705.3	+	11991178,11992278,11992554,11996155,11997296,11998769,11998987,12001400,12001768,12001981,12003991,12004508,12004824,12005710,12006537,12007052,12009591,12011495	11991278,11992463,11992690,11996318,11997421,11998878,11999095,12001554,12001836,12002103,12004118,12004613,12004927,12005931,12006693,12007249,12009726,12013508	0.956522
liver_male_adult_32_years	chr21	33931146	33931167	33931166	+	High_confidence	5	5	22	0.900162	3.135822	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.772727
liver_male_adult_32_years	chr20	34408281	34408283	34408282	+	RAMPAGE_only	6	8	10	0.409165	2.646439	chr20	34408117	34408373	SINE|Alu|AluJo	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	1.000000
liver_male_adult_32_years	chr7	90154183	90154184	90154183	+	High_confidence	5	5	7	0.286415	2.521641	chr7	90154032	90154206	DNA|hAT-Charlie|MER5A	+	chr7	90154374	90164827	STEAP1|ENST00000297205.6	+	90154374,90159757,90160804,90161913,90164476	90154543,90159872,90161317,90162078,90164827	1.000000
liver_male_adult_32_years	chr12	210373	210385	210373	-	High_confidence	5	5	10	0.409165	3.169925	chr12	210158	210344	SINE|MIR|MIR3	-	chr12	190076	210605	SLC6A12|ENST00000397296.6	-	190076,192477,193276,195224,196123,196769,197376,197899,198796,200650,201761,202739,204563,209772,210204	191211,192648,193377,195327,196261,196882,197501,198003,198931,200783,201849,202880,204698,210043,210605	0.700000
liver_male_adult_32_years	chr4	169115337	169115349	169115348	-	RAMPAGE_only	7	12	23	0.941078	4.262692	chr4	169115255	169115782	DNA|hAT-Charlie|MER1A	+	chr4	169078671	169177815	STRG.40780.7	-	169078671,169106846,169115220,169120818,169155479,169156403	169096687,169107205,169117782,169136620,169155575,169177815	0.869565
liver_male_adult_32_years	chr2	182913415	182913436	182913415	+	High_confidence	20	22	56	2.291321	3.437491	chr2	182913255	182913683	LTR|ERVL-MaLR|MSTC	+	chr2	182913270	182936047	STRG.20231.1	+	182913270	182936047	0.982143
liver_male_adult_32_years	chr2	112824328	112824457	112824334	-	High_confidence	57	60	323	13.216014	4.605240	chr2	112823914	112824338	LINE|L2|L2a	+	chr2	112817944	112824394	STRG.17737.1	-	112817944,112824260	112819440,112824394	0.969040
liver_male_adult_32_years	chr22	39021146	39021182	39021155	+	High_confidence	13	13	65	2.659569	5.020928	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
liver_male_adult_32_years	chr22	35311038	35311077	35311038	+	High_confidence	5	5	20	0.818329	2.846439	chr22	35310706	35311148	LINE|L2|L2c	-	chr22	35311061	35323819	TOM1|ENST00000443206.2	+	35311061,35317876,35321958,35323027,35323495,35323767	35311127,35317961,35322037,35323177,35323630,35323819	1.000000
liver_male_adult_32_years	chr3	123068855	123068884	123068862	+	RAMPAGE_only	3	3	13	0.531914	3.251629	chr3	123068662	123069013	LINE|L2|L2b	-	chr3	123067347	123106842	PDIA5|ENST00000484644.5	+	123067347,123089167,123092354,123102410,123102750,123106748	123067575,123089294,123092442,123102494,123102796,123106842	0.769231
liver_male_adult_32_years	chr4	4269605	4269614	4269609	-	High_confidence	7	7	20	0.818329	3.115834	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.950000
liver_male_adult_32_years	chr19	44725180	44725200	44725180	-	High_confidence	143	143	418	17.103077	6.839382	chr19	44725104	44725160	SINE|MIR|MIR1_Amn	-	chr19	44670849	44725222	STRG.123742.6	-	44670849,44680676,44719229	44680634,44716083,44725222	0.933014
liver_male_adult_32_years	chr8	8244527	8244555	8244527	-	High_confidence	4	4	21	0.859245	3.689704	chr8	8244455	8244522	LTR|ERV1|MER57A-int	-	chr8	8240223	8244493	ALG1L13P|ENST00000522393.1	-	8240223,8240428,8241321,8242786,8243992,8244459	8240351,8240549,8241400,8242926,8244040,8244493	0.571429
liver_male_adult_32_years	chr1	54867152	54867189	54867170	-	RAMPAGE_only	4	7	18	0.736496	3.690117	chr1	54867161	54867293	SINE|MIR|MIRb	+	chr1	54852366	54886836	DHCR24|ENST00000647585.1	-	54852366,54853433,54854036,54865302,54871349,54875092,54875941,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54883773,54886836	0.944444
liver_male_adult_32_years	chr19	38763068	38763080	38763073	-	High_confidence	5	7	24	0.981995	4.152391	chr19	38762895	38763152	SINE|Alu|AluJo	+	chr19	38730677	38763643	STRG.123150.4	-	38730677,38730964,38731106,38733702,38734141,38734318,38734812,38735369,38736109,38736551,38737155,38737474,38738272,38738417,38738573,38740050,38741776,38742409,38743032,38743620,38747180	38730878,38731023,38731223,38733781,38734204,38734389,38734870,38735544,38736318,38736563,38737388,38737638,38738347,38738503,38738648,38740219,38741910,38742528,38743473,38746407,38763643	0.833333
liver_male_adult_32_years	chr1	95117543	95117594	95117571	+	High_confidence	3	3	15	0.613747	3.773557	chr1	95117576	95117935	LINE|L1|L1M4b	+	chr1	95117438	95173878	TMEM56|ENST00000456991.5	+	95117438,95121054,95143890,95148701,95150207,95151324,95173815	95117827,95121184,95144056,95148791,95150266,95151419,95173878	0.666667
liver_male_adult_32_years	chr11	126327865	126327900	126327875	+	High_confidence	260	595	2664	109.001427	7.038561	chr11	126327772	126328221	LINE|L2|L2a	-	chr11	126327865	126345716	STRG.89628.5	+	126327865,126331404,126338285,126343306,126345346	126330436,126331550,126338399,126343417,126345716	0.966592
liver_male_adult_32_years	chr5	134432957	134432962	134432960	-	High_confidence	3	5	9	0.368248	2.750000	chr5	134432943	134433102	LINE|L1|HAL1	-	chr5	134428968	134433194	STRG.47360.1	-	134428968,134429884,134432914	134429627,134429951,134433194	0.888889
liver_male_adult_32_years	chr10	35352723	35352738	35352737	+	RAMPAGE_only	601	604	954	39.034295	5.612303	chr10	35352603	35352744	LINE|L2|L2c	-	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.939203
liver_male_adult_32_years	chr17	58535636	58535642	58535636	-	RAMPAGE_only	10	10	23	0.941078	4.229871	chr17	58535378	58535602	LINE|CR1|L3	-	chr17	58520249	58532084	SEPT4|NM_080416.3	-	58520249,58520742,58520997,58521253,58521544,58521735,58521966,58525077,58525694,58526219,58526681,58531960	58520485,58520842,58521160,58521350,58521646,58521853,58522101,58525201,58525781,58526313,58526978,58532084	0.608696
liver_male_adult_32_years	chr1	167966288	167966296	167966295	+	RAMPAGE_only	121	144	261	10.679194	5.171044	chr1	167966281	167966502	DNA|hAT-Charlie|MER30	+	chr1	167968489	167991339	DCAF6|ENST00000491067.1	+	167968489,167969203,167974829,167987494,167991203	167968533,167969259,167975015,167987608,167991339	0.681992
liver_male_adult_32_years	chr4	73422882	73422888	73422882	+	RAMPAGE_only	8	8	13	0.531914	3.251629	chr4	73422777	73423142	LINE|L1|L1PB1	+	chr4	73436162	73456174	AFP|ENST00000395792.6	+	73436162,73437159,73438173,73440601,73442295,73443346,73444992,73447461,73449334,73450035,73450614,73452400,73453764,73455235,73455630	73436347,73437211,73438306,73440813,73442428,73443444,73445122,73447676,73449467,73450133,73450753,73452624,73453897,73455290,73456174	0.538462
liver_male_adult_32_years	chr17	68824792	68824810	68824792	-	High_confidence	13	23	39	1.595742	4.541311	chr17	68824679	68825054	LINE|L2|L2a	+	chr17	68788328	68825079	STRG.117250.1	-	68788328,68797460,68798551,68798881,68800127	68793704,68798091,68798750,68798931,68825079	1.000000
liver_male_adult_32_years	chr10	45000354	45000388	45000354	+	High_confidence	8	8	33	1.350243	4.839701	chr10	45000000	45000445	LINE|L2|L2	-	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
liver_male_adult_32_years	chr3	114872745	114872770	114872762	-	RAMPAGE_only	28	32	91	3.723397	5.274401	chr3	114872710	114872811	SINE|MIR|MIRb	-	chr3	114339303	114900342	ZBTB20|ENST00000479879.5	-	114339303,114380216,114389004,114500351,114801100,114900303	114339426,114380404,114389105,114500391,114801174,114900342	0.681319
liver_male_adult_32_years	chr16	75318112	75318135	75318116	-	RAMPAGE_only	5	8	18	0.736496	3.683542	chr16	75317828	75318154	SINE|Alu|AluSx	+	chr16	75293697	75306545	CFDP1|ENST00000570103.5	-	75293697,75305023,75306386	75294042,75305182,75306545	0.944444
liver_male_adult_32_years	chrX	106901900	106901902	106901900	-	High_confidence	3	6	8	0.327332	2.521641	chrX	106901833	106901957	SINE|MIR|MIRc	+	chrX	106899609	106902525	STRG.135917.1	-	106899609,106901473,106902139	106900908,106901538,106902525	0.875000
liver_male_adult_32_years	chr1	52913120	52913158	52913157	-	High_confidence	664	707	1263	51.677478	6.588624	chr1	52913062	52913284	LINE|L1|HAL1M8	-	chr1	52911598	52913344	ECHDC2|ENST00000493896.2	-	52911598,52911722,52912753	52911653,52911790,52913344	0.655582
liver_male_adult_32_years	chr10	44990430	44990431	44990430	+	High_confidence	72	74	102	4.173478	5.618255	chr10	44990231	44990788	LTR|ERV1|MER34A1	-	chr10	44990537	44991970	RASSF4|ENST00000493490.1	+	44990537,44990947,44991904	44990828,44991069,44991970	0.852941
liver_male_adult_32_years	chr17	77390290	77390295	77390290	+	RAMPAGE_only	53	54	131	5.360055	5.109192	chr17	77390212	77390366	SINE|Alu|AluYc	+	chr17	77380122	77402483	SEPT9|ENST00000589140.1	+	77380122,77402058	77380249,77402483	0.893130
liver_male_adult_32_years	chr8	30812423	30812454	30812453	-	High_confidence	3	3	9	0.368248	2.750000	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.888889
liver_male_adult_32_years	chr19	5680240	5680249	5680240	-	High_confidence	12	12	36	1.472992	4.325304	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
liver_male_adult_32_years	chr17	40326389	40326432	40326389	+	RAMPAGE_only	4	4	19	0.777413	3.932138	chr17	40326254	40326436	SINE|MIR|MIRb	-	chr17	40323769	40356795	STRG.115390.5	+	40323769,40348315,40349783,40350813,40352330,40354301,40355262,40356008	40331396,40348464,40350639,40352070,40352507,40354506,40355421,40356795	1.000000
liver_male_adult_32_years	chr6	131844453	131844473	131844472	+	High_confidence	254	271	1130	46.235590	6.253306	chr6	131844197	131845043	DNA|TcMar-Tigger|Tigger6a	+	chr6	131844456	131895155	STRG.55960.4	+	131844456,131847775,131849989,131851141,131852174,131854925,131858667,131860386,131861594,131864505,131864865,131868017,131869357,131872069,131872922,131874267,131875775,131876991,131878541,131879879,131882344,131883693,131884930,131886561,131890340	131844980,131847848,131850106,131851267,131852235,131855023,131858747,131860506,131861704,131864571,131864938,131868126,131869489,131872101,131873050,131874337,131875863,131877161,131878593,131880034,131882474,131883774,131885063,131886724,131895155	0.974336
liver_male_adult_32_years	chr2	38408756	38408781	38408756	+	High_confidence	2	2	10	0.409165	3.121928	chr2	38408662	38408966	SINE|Alu|AluSz	-	chr2	38408704	38412543	STRG.14319.1	+	38408704,38409092,38411790	38408978,38409183,38412543	1.000000
liver_male_adult_32_years	chr16	70701810	70701823	70701810	-	RAMPAGE_only	4	4	8	0.327332	2.521641	chr16	70701088	70701988	LINE|L2|L2a	+	chr16	70687441	70700245	VAC14|ENST00000536184.6	-	70687441,70692820,70695543,70697138,70698636,70699258	70688090,70692971,70695623,70697257,70698811,70700245	0.625000
liver_male_adult_32_years	chr1	78620056	78620058	78620056	+	High_confidence	13	20	20	0.818329	4.021928	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	1.000000
liver_male_adult_32_years	chrX	124984280	124984310	124984301	-	High_confidence	239	264	1173	47.994998	6.464514	chrX	124984283	124984539	DNA|hAT-Tip100|MamTip2	-	chrX	124375907	124984334	STRG.136957.1	-	124375907,124382669,124383633,124385676,124392051,124405030,124406316,124420310,124422271,124453336,124481731,124483965,124487208,124497015,124503559,124520516,124523363,124529863,124546873,124561670,124563748,124641790,124645142,124646708,124651913,124653583,124671682,124705012,124736956,124894295,124895980,124963536,124983294,124984159	124381294,124382812,124384854,124386064,124392348,124405266,124406489,124420821,124422638,124453491,124481964,124484085,124487229,124497265,124503703,124520784,124523625,124529983,124547090,124561817,124565560,124641991,124645337,124646810,124652124,124653783,124671835,124705251,124737197,124894352,124896241,124963817,124983349,124984334	0.953112
liver_male_adult_32_years	chr5	66690102	66690121	66690120	+	RAMPAGE_only	32	35	137	5.605554	4.952001	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66738030	66788705	MAST4|ENST00000478569.1	+	66738030,66759708,66783334,66788669	66738257,66759862,66783384,66788705	0.854015
liver_male_adult_32_years	chr16	4642173	4642179	4642178	+	RAMPAGE_only	5	5	10	0.409165	3.121928	chr16	4642124	4642285	SINE|Alu|AluSz	-	chr16	4650386	4680067	MGRN1|ENST00000590790.5	+	4650386,4651962,4652677,4657245,4664708,4665098,4668264,4671390,4673497,4677462,4680031	4650483,4652051,4652824,4657363,4664775,4665151,4668312,4671459,4673657,4677572,4680067	1.000000
liver_male_adult_32_years	chr9	129495803	129495818	129495817	+	High_confidence	7	7	14	0.572830	3.378783	chr9	129495725	129495901	SINE|MIR|MIRc	-	chr9	129496008	129503597	LINC00963|ENST00000622120.1	+	129496008,129503322	129496088,129503597	0.928571
liver_male_adult_32_years	chr6	43917411	43917412	43917411	-	RAMPAGE_only	8	8	9	0.368248	2.500000	chr6	43917319	43917388	SINE|MIR|MIRc	-	chr6	43902172	43903150	STRG.52483.1	-	43902172	43903150	0.555556
liver_male_adult_32_years	chr14	81820158	81820159	81820158	-	High_confidence	8	8	11	0.450081	2.921928	chr14	81819891	81820257	LTR|ERVL-MaLR|MLT1A1	-	chr14	81810619	81820093	STRG.103597.1	-	81810619,81816305,81818133,81819959	81811953,81816384,81818270,81820093	0.909091
liver_male_adult_32_years	chr2	95121537	95121554	95121553	-	High_confidence	6	6	12	0.490997	3.251629	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.750000
liver_male_adult_32_years	chr9	109479065	109479104	109479075	-	RAMPAGE_only	67	74	206	8.428789	6.214475	chr9	109479015	109479587	LINE|L1|L1MB4	-	chr9	109375699	109497969	STRG.76048.2	-	109375699,109377417,109381651,109382301,109383422,109389232,109391137,109391470,109404447,109406461,109408320,109409998,109410228,109420423,109422717,109426949,109428620,109433072,109436882,109438113,109445239,109448810,109454495,109457291,109463296,109478808	109377393,109379633,109381787,109382447,109383551,109389379,109391199,109391561,109404608,109406618,109408377,109410076,109410415,109420600,109422852,109427122,109428684,109433161,109436970,109438234,109445292,109448855,109457215,109457399,109463451,109497969	0.932039
liver_male_adult_32_years	chr18	74551071	74551120	74551071	+	High_confidence	341	343	501	20.499142	6.917427	chr18	74550956	74551330	LTR|ERVL-MaLR|MSTA	+	chr18	74551027	74585011	STRG.120436.1	+	74551027,74556337,74559322,74560855,74562046,74567232,74571185,74576868,74578162,74580129,74583560,74584495	74551201,74556466,74559472,74561018,74562135,74567433,74571270,74577029,74578327,74580271,74583708,74585011	0.678643
liver_male_adult_32_years	chr1	57231441	57231460	57231441	-	RAMPAGE_only	14	17	36	1.472992	4.669925	chr1	57231261	57231513	LINE|L2|L2c	+	chr1	57010694	57291065	DAB1|ENST00000371231.5	-	57010694,57011144,57014882,57023530,57025980,57033385,57033522,57062883,57069359,57071022,57071521,57072282,57136542,57145289,57290963	57010790,57011272,57015431,57023639,57026043,57033433,57033573,57062943,57069425,57071061,57071641,57072414,57136641,57145429,57291065	0.500000
liver_male_adult_32_years	chr9	87423076	87423101	87423083	-	High_confidence	56	62	240	9.819948	6.437207	chr9	87423023	87423375	LTR|ERV1|MER57B2	+	chr9	87419092	87423094	STRG.74550.1	-	87419092,87423052	87420413,87423094	0.754167
liver_male_adult_32_years	chr4	94564552	94564553	94564552	+	RAMPAGE_only	10	11	13	0.531914	3.084963	chr4	94564272	94564647	LINE|L2|L2a	+	chr4	94489034	94575938	PDLIM5|ENST00000510099.5	+	94489034,94523723,94573350,94575615	94489070,94523875,94573393,94575938	0.692308
liver_male_adult_32_years	chr3	52286944	52286953	52286944	+	High_confidence	7	7	18	0.736496	3.794653	chr3	52286837	52286984	LTR|ERV1?|LTR103b_Mam	+	chr3	52287088	52293166	GLYCTK|ENST00000461183.5	+	52287088,52290959,52291746,52292259,52293045	52287218,52291111,52291922,52292569,52293166	0.611111
liver_male_adult_32_years	chr6	151641350	151641353	151641352	+	RAMPAGE_only	34	58	61	2.495904	5.231006	chr6	151641159	151641564	LTR|ERVL-MaLR|MSTB	+	chr6	151656690	152061059	STRG.56952.2	+	151656690,151701874,151704964,151799774,151807842,151842596,151880654,151944172,152011655,152060990	151656763,151704910,151799698,151805820,151808364,151842787,151880771,151944508,152011794,152061059	0.573770
liver_male_adult_32_years	chr2	230520765	230520788	230520765	-	High_confidence	22	22	37	1.513909	4.229004	chr2	230520655	230521096	LTR|ERV1|LTR44	-	chr2	230518597	230520917	STRG.22832.11	-	230518597	230520917	0.891892
liver_male_adult_32_years	chr12	111791819	111791862	111791819	+	High_confidence	16	16	63	2.577736	5.010711	chr12	111791747	111791914	SINE|Alu|AluJb	+	chr12	111792610	111809670	ALDH2|ENST00000549106.1	+	111792610,111798077,111803858,111809542	111792782,111798242,111803973,111809670	0.904762
liver_male_adult_32_years	chr17	79733304	79733310	79733304	+	RAMPAGE_only	8	8	16	0.654663	3.750000	chr17	79733061	79733306	LINE|L1|L1ME4b	-	chr17	79731102	79742222	ENPP7|NM_178543.4	+	79731102,79733507,79735042,79737040,79737915,79741793	79731392,79733653,79735669,79737260,79738062,79742222	0.687500
liver_male_adult_32_years	chr11	321237	321261	321260	-	High_confidence	3	3	8	0.327332	2.750000	chr11	321227	321340	SINE|Alu|AluY	+	chr11	319668	321050	IFITM3|ENST00000399808.4	-	319668,320564	319990,321050	1.000000
liver_male_adult_32_years	chr4	73422933	73422934	73422933	+	RAMPAGE_only	8	8	12	0.490997	2.751629	chr4	73422777	73423142	LINE|L1|L1PB1	+	chr4	73436162	73456174	AFP|ENST00000395792.6	+	73436162,73437159,73438173,73440601,73442295,73443346,73444992,73447461,73449334,73450035,73450614,73452400,73453764,73455235,73455630	73436347,73437211,73438306,73440813,73442428,73443444,73445122,73447676,73449467,73450133,73450753,73452624,73453897,73455290,73456174	0.583333
liver_male_adult_32_years	chr19	11321325	11321326	11321325	-	High_confidence	11	11	11	0.450081	3.277613	chr19	11321200	11321519	LTR|ERVL-MaLR|THE1D	-	chr19	11300866	11321323	AC011472.2|ENST00000585801.1	-	11300866,11306678,11321293	11301236,11306824,11321323	0.545455
liver_male_adult_32_years	chr22	27933309	27933374	27933309	-	High_confidence	36	38	137	5.605554	5.992301	chr22	27933098	27933548	LTR|ERV1|LTR71A	-	chr22	27932099	27932866	STRG.130274.1	-	27932099	27932866	0.525547
liver_male_adult_32_years	chr16	76532277	76532278	76532277	-	High_confidence	15	15	22	0.900162	3.823068	chr16	76532240	76532329	SINE|MIR|MIRc	+	chr16	76525894	76532348	STRG.112396.2	-	76525894	76532348	1.000000
liver_male_adult_32_years	chr12	29640657	29640671	29640657	-	High_confidence	3	3	8	0.327332	2.521641	chr12	29640284	29642617	LINE|L1|L1PBa1	+	chr12	29505981	29641238	TMTC1|ENST00000319685.12	-	29505981,29512042,29514481,29516348,29517426,29518471,29520617,29536208,29556856,29572104,29583406,29604177,29633146,29640559	29506986,29512120,29514604,29516486,29517571,29518607,29520720,29536317,29557000,29572218,29583574,29604299,29633336,29641238	0.625000
liver_male_adult_32_years	chr7	154928480	154928504	154928503	+	High_confidence	11	11	31	1.268410	4.548394	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.967742
liver_male_adult_32_years	chr8	58335717	58335718	58335717	-	High_confidence	16	16	23	0.941078	4.055958	chr8	58331582	58336290	LINE|L1|L1PA10	+	chr8	58335178	58335456	STRG.66971.1	-	58335178	58335456	0.782609
liver_male_adult_32_years	chr4	39472408	39472424	39472423	-	RAMPAGE_only	123	123	299	12.234019	6.044900	chr4	39472147	39472408	DNA|TcMar-Tigger|Tigger2	-	chr4	39462342	39469885	STRG.36044.31	-	39462342,39468748,39469606	39468478,39468868,39469885	0.725753
liver_male_adult_32_years	chr12	31959160	31959179	31959178	+	High_confidence	4	5	11	0.450081	2.921928	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31981060	KIAA1551|ENST00000540924.5	+	31959407,31960776,31980877	31959491,31960871,31981060	0.636364
liver_male_adult_32_years	chr3	134485415	134485416	134485415	-	High_confidence	5	5	7	0.286415	2.584963	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.857143
liver_male_adult_32_years	chr3	16331666	16331673	16331666	+	RAMPAGE_only	12	13	26	1.063828	4.286790	chr3	16331266	16331722	LINE|L1|HAL1	-	chr3	16265231	16337315	STRG.24542.4	+	16265231,16269125,16270944,16271658,16286341,16294855,16301625,16302639,16303407,16319460	16265505,16269275,16271071,16271722,16286448,16294997,16301868,16302748,16303592,16337315	0.884615
liver_male_adult_32_years	chr1	243270713	243270731	243270718	+	High_confidence	5	5	25	1.022911	3.740953	chr1	243270569	243270916	LINE|L2|L2a	+	chr1	243271024	243305087	SDCCAG8|ENST00000482234.1	+	243271024,243274542,243286271,243293090,243304712,243305011	243271063,243274656,243286397,243293219,243304777,243305087	0.560000
liver_male_adult_32_years	chr22	41308796	41308838	41308837	+	RAMPAGE_only	7	7	19	0.777413	3.721612	chr22	41308560	41309008	LINE|L2|L2a	+	chr22	41301714	41336843	ZC3H7B|ENST00000486331.1	+	41301714,41320654,41325563,41325720,41327205,41330022,41332170	41301772,41320713,41325597,41325918,41327364,41330103,41336843	0.894737
liver_male_adult_32_years	chr1	189149625	189149656	189149633	+	High_confidence	15	18	89	3.641564	5.323180	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	189149656	189452268	STRG.9408.1	+	189149656,189150541,189307728,189389824,189452040	189149876,189150759,189307878,189389879,189452268	0.898876
liver_male_adult_32_years	chr7	15547747	15547768	15547767	-	RAMPAGE_only	3	3	8	0.327332	2.750000	chr7	15547309	15553333	LINE|L1|L1PA2	+	chr7	15200317	15562015	AGMO|NM_001004320.1	-	15200317,15365513,15366139,15385445,15387405,15390670,15390839,15394112,15418557,15431004,15544771,15560140,15561719	15201359,15365619,15366222,15385562,15387540,15390750,15390905,15394179,15418653,15431108,15544923,15560271,15562015	1.000000
liver_male_adult_32_years	chr3	58377952	58377953	58377952	-	RAMPAGE_only	19	19	19	0.777413	3.076103	chr3	58377660	58378426	LINE|L1|HAL1	+	chr3	58192626	58214697	DNASE1L3|ENST00000483681.5	-	58192626,58197820,58200996,58204768,58205470,58208217,58210765,58214107,58214301	58193439,58197978,58201109,58204881,58205560,58208306,58211003,58214196,58214697	1.000000
liver_male_adult_32_years	chr12	111875	111884	111875	-	High_confidence	22	30	42	1.718491	4.834184	chr12	110820	111833	LTR|ERV1|HERVP71A-int	-	chr12	106523	111850	AC026369.3|ENST00000540226.1	-	106523,111618	106877,111850	0.714286
liver_male_adult_32_years	chr20	40004279	40004350	40004317	+	High_confidence	100	104	293	11.988520	6.793604	chr20	40004094	40004398	LINE|L1|L1PA13	-	chr20	40004262	40029524	STRG.126522.8	+	40004262,40006262,40010128	40004491,40008900,40029524	0.901024
liver_male_adult_32_years	chr6	131635532	131635553	131635532	+	RAMPAGE_only	3	3	10	0.409165	3.169925	chr6	131635429	131635627	LTR|ERV1|PABL_B	+	chr6	131637234	131747410	ENPP3|NM_005021.4	+	131637234,131641454,131650026,131652541,131652830,131658322,131671247,131674161,131675079,131676735,131677867,131683053,131685363,131685875,131693496,131718671,131720291,131722226,131724039,131726045,131733587,131737354,131738030,131740223,131746785	131637462,131641530,131650149,131652667,131652891,131658420,131671327,131674281,131675189,131676801,131677940,131683162,131685495,131685907,131693624,131718738,131720379,131722405,131724091,131726200,131733723,131737432,131738163,131740380,131747410	0.600000
liver_male_adult_32_years	chr5	95844082	95844118	95844114	+	High_confidence	42	57	168	6.873964	6.250724	chr5	95844156	95844245	LTR|ERVL-MaLR|MLT1K	+	chr5	95844033	95860133	STRG.45350.6	+	95844033,95858414	95857864,95860133	1.000000
liver_male_adult_32_years	chr19	47227152	47227194	47227152	-	High_confidence	2	2	12	0.490997	3.251629	chr19	47227045	47227213	SINE|MIR|MIR1_Amn	-	chr19	47221644	47227189	BBC3|ENST00000598636.1	-	47221644,47226563	47221918,47227189	1.000000
liver_male_adult_32_years	chr19	51350363	51350364	51350363	-	RAMPAGE_only	7	9	9	0.368248	2.503258	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
liver_male_adult_32_years	chr16	3696145	3696146	3696145	+	High_confidence	9	9	14	0.572830	3.700440	chr16	3696177	3696549	LINE|L1|L1MC4a	+	chr16	3696120	3699807	STRG.109812.1	+	3696120,3699688	3696555,3699807	0.857143
liver_male_adult_32_years	chr3	125617971	125618114	125618104	+	RAMPAGE_only	33	64	287	11.743022	6.415065	chr3	125616037	125618743	LTR|ERVL|HERVL-int	+	chr3	125616083	125627231	STRG.29950.2	+	125616083	125627231	0.989547
liver_male_adult_32_years	chr10	73119741	73119813	73119750	+	RAMPAGE_only	7	7	43	1.759407	4.042524	chr10	73119659	73119842	LINE|L2|L2c	-	chr10	73110529	73131828	NUDT13|ENST00000372997.3	+	73110529,73114356,73120017,73122174,73124213,73125117,73126672,73130702	73110567,73114448,73120157,73122309,73124320,73125243,73126827,73131828	0.837209
liver_male_adult_32_years	chr6	160706023	160706031	160706030	+	High_confidence	5	5	11	0.450081	3.321928	chr6	160706002	160706227	LINE|L1|L1PA16	-	chr6	160706109	160711572	PLG|ENST00000494325.1	+	160706109,160706406,160707699,160711076	160706142,160706542,160707806,160711572	0.545455
liver_male_adult_32_years	chr5	95852298	95852327	95852317	+	High_confidence	4	4	11	0.450081	2.646439	chr5	95850982	95852649	LTR|ERV1|LTR12C	+	chr5	95852231	95860133	LINC01554|NR_026936.1	+	95852231,95856877,95858803	95852714,95856981,95860133	0.909091
liver_male_adult_32_years	chr4	152486193	152486217	152486216	-	RAMPAGE_only	8	8	26	1.063828	4.132944	chr4	152485881	152487007	DNA|TcMar-Tigger|Tigger3b	-	chr4	152321257	152535033	FBXW7|NM_033632.3	-	152321257,152324183,152326005,152328207,152329671,152330731,152332595,152337801,152346929,152350041,152411302,152534940	152323149,152324394,152326231,152328389,152329785,152330868,152332719,152337936,152347071,152350124,152411872,152535033	0.769231
liver_male_adult_32_years	chr4	2867814	2867903	2867850	+	High_confidence	6	6	27	1.104744	4.286790	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.962963
liver_male_adult_32_years	chr12	3110939	3110965	3110939	+	RAMPAGE_only	23	24	88	3.600648	5.777722	chr12	3110987	3111077	SINE|MIR|MIR3	+	chr12	3089436	3280471	STRG.90336.9	+	3089436,3201176,3278420,3278991,3280381	3111077,3201256,3278612,3279066,3280471	0.534091
liver_male_adult_32_years	chr7	158863386	158863435	158863408	+	RAMPAGE_only	10	15	74	3.027817	5.432507	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.959459
liver_male_adult_32_years	chr2	109005954	109005975	109005954	-	RAMPAGE_only	3	3	8	0.327332	3.000000	chr2	109005908	109006090	LTR|ERVL-MaLR|MLT1J2	-	chr2	108997470	108998528	STRG.17484.1	-	108997470	108998528	0.500000
liver_male_adult_32_years	chr8	85378112	85378113	85378112	-	High_confidence	51	53	54	2.209488	3.220059	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.944444
liver_male_adult_32_years	chr20	38346075	38346076	38346075	+	High_confidence	104	104	122	4.991807	5.005060	chr20	38346041	38346224	SINE|MIR|MIRb	+	chr20	38346355	38377023	LBP|ENST00000217407.2	+	38346355,38349547,38350810,38354283,38355345,38360703,38363974,38364575,38366768,38368994,38370737,38371279,38373071,38373936,38376624	38346640,38349662,38350939,38354439,38355409,38360767,38364066,38364752,38366828,38369162,38370805,38371322,38373135,38374013,38377023	0.852459
liver_male_adult_32_years	chr1	1655445	1655457	1655445	-	RAMPAGE_only	3	3	12	0.490997	3.251629	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.500000
liver_male_adult_32_years	chr8	118356833	118356857	118356833	-	RAMPAGE_only	172	175	382	15.630085	6.319738	chr8	118356600	118357114	LINE|L2|L2b	+	chr8	118320926	118372748	STRG.69704.6	-	118320926	118372748	0.845550
liver_male_adult_32_years	chr4	94562560	94562591	94562571	+	RAMPAGE_only	13	15	82	3.355149	4.511095	chr4	94562452	94562686	DNA|hAT-Charlie|Charlie10	+	chr4	94489034	94575938	PDLIM5|ENST00000510099.5	+	94489034,94523723,94573350,94575615	94489070,94523875,94573393,94575938	0.975610
liver_male_adult_32_years	chr11	65181215	65181240	65181222	+	High_confidence	6	6	19	0.777413	3.524945	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181216	65182890	STRG.86685.15	+	65181216,65182700	65181410,65182890	0.842105
liver_male_adult_32_years	chr1	200411720	200411814	200411799	+	High_confidence	316	325	617	25.245451	6.306929	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411799	200475513	AC104461.1|ENST00000634596.1	+	200411799,200473908	200411962,200475513	0.638574
liver_male_adult_32_years	chr9	68975832	68975855	68975854	-	High_confidence	22	22	68	2.782319	5.148033	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68972302	68975837	STRG.73383.2	-	68972302,68975663	68972641,68975837	0.544118
liver_male_adult_32_years	chr12	56762848	56762875	56762848	+	High_confidence	7	8	27	1.104744	4.384517	chr12	56762828	56763115	SINE|Alu|AluSx1	+	chr12	56762742	56787345	STRG.93086.2	+	56762742,56763197,56773833,56781973,56784852,56787124	56762927,56763414,56774165,56782232,56785016,56787345	0.555556
liver_male_adult_32_years	chr1	67533233	67533259	67533240	-	High_confidence	9	16	35	1.432076	4.479143	chr1	67533014	67533307	SINE|Alu|AluSz6	-	chr1	67530687	67533282	STRG.4156.9	-	67530687	67533282	0.800000
liver_male_adult_32_years	chr19	4153872	4153873	4153872	+	High_confidence	15	15	20	0.818329	3.884184	chr19	4153834	4153912	SINE|MIR|MIR3	-	chr19	4153667	4171984	CREB3L3|ENST00000602257.5	+	4153667,4154898,4156994,4159663,4164508,4168350,4170139,4171090,4171382,4171655	4153774,4155027,4157295,4159782,4164640,4168457,4170208,4171175,4171479,4171984	0.650000
liver_male_adult_32_years	chr16	2205850	2205908	2205850	+	High_confidence	12	12	60	2.454987	4.425683	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.966667
liver_male_adult_32_years	chr6	8652256	8652290	8652274	+	High_confidence	1486	1515	3919	160.351574	5.857245	chr6	8652094	8652454	LTR|ERVL-MaLR|MLT1A	+	chr6	8652261	8653814	AL591485.1|ENST00000646741.1	+	8652261,8653544	8653136,8653814	0.939781
liver_male_adult_32_years	chr5	70401529	70401547	70401529	+	High_confidence	3	3	11	0.450081	3.121928	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70401208	70447526	STRG.44153.23	+	70401208,70406841,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70401668,70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.818182
liver_male_adult_32_years	chr3	52783311	52783324	52783311	+	RAMPAGE_only	2	3	8	0.327332	2.521641	chr3	52783352	52783441	LINE|CR1|L3	+	chr3	52784411	52792033	ITIH1|ENST00000428133.5	+	52784411,52785043,52786294,52786944,52787591,52787985,52788231,52789652,52790748,52791516,52791781	52784477,52785229,52786434,52787114,52787612,52788066,52788345,52789854,52790921,52791628,52792033	0.875000
liver_male_adult_32_years	chr4	38744114	38744119	38744114	+	High_confidence	44	45	87	3.559731	5.278252	chr4	38743635	38744259	LINE|L1|HAL1	+	chr4	38744067	38752917	STRG.35979.1	+	38744067,38745340,38748299,38750593,38751431	38744267,38745461,38748790,38750739,38752917	0.701149
liver_male_adult_32_years	chr3	39154538	39154566	39154565	-	High_confidence	13	15	21	0.859245	3.366091	chr3	39154504	39154649	LINE|L2|L2c	+	chr3	39142337	39154562	CSRNP1|ENST00000514182.1	-	39142337,39144136,39144996,39146477,39154496	39144044,39144451,39145256,39146722,39154562	0.666667
liver_male_adult_32_years	chr17	59619894	59619923	59619894	+	High_confidence	1254	1443	4138	169.312277	6.037215	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.971967
liver_male_adult_32_years	chr17	69268746	69268838	69268816	-	High_confidence	61	71	328	13.420596	6.069959	chr17	69268468	69268963	LTR|ERVL|LTR105_Mam	+	chr17	69247375	69268874	STRG.117273.36	-	69247375,69248261,69249818,69250471,69251746,69253572,69253793,69254314,69255542,69255732,69256156,69259705,69260337,69261124,69261634,69264734,69267942	69247644,69248317,69249984,69250621,69251866,69253667,69253869,69254490,69255634,69255850,69256283,69259797,69260412,69261259,69261748,69264905,69268874	0.972561
liver_male_adult_32_years	chr3	134485455	134485514	134485455	-	High_confidence	4	4	38	1.554825	4.574054	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.921053
liver_male_adult_32_years	chr5	7851722	7851723	7851722	-	High_confidence	4	4	6	0.245499	2.584963	chr5	7851617	7851689	DNA|hAT-Charlie|MER33	-	chr5	7830377	7851490	C5orf49|ENST00000399810.6	-	7830377,7835381,7850874	7832029,7835498,7851490	1.000000
liver_male_adult_32_years	chr1	45522855	45522859	45522858	-	High_confidence	785	787	1364	55.810040	5.770476	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.969941
liver_male_adult_32_years	chr2	44061984	44061993	44061992	-	High_confidence	7	9	15	0.613747	3.521641	chr2	44061736	44062091	LTR|ERV1|LTR48	+	chr2	44059003	44061995	STRG.14608.1	-	44059003	44061995	0.933333
liver_male_adult_32_years	chr18	70335386	70335401	70335400	+	High_confidence	3	3	7	0.286415	2.584963	chr18	70335381	70335678	DNA|hAT-Charlie|Charlie24	-	chr18	70335438	70352459	LINC01909|ENST00000584919.1	+	70335438,70336057,70336321,70351978	70335506,70336140,70336504,70352459	0.714286
liver_male_adult_32_years	chr7	30594379	30594390	30594389	-	High_confidence	25	27	81	3.314233	5.328573	chr7	30594385	30594501	SINE|MIR|MIR3	+	chr7	30561561	30594743	STRG.59641.3	-	30561561,30563722,30568832,30574763,30576563,30579230,30585329,30594710	30562128,30563998,30573099,30574881,30578091,30579314,30585479,30594743	0.641975
liver_male_adult_32_years	chr14	20342756	20342784	20342757	-	RAMPAGE_only	3	5	16	0.654663	3.139572	chr14	20342726	20343030	SINE|Alu|AluY	-	chr14	20311367	20333312	CCNB1IP1|ENST00000437553.6	-	20311367,20313467,20316226,20317793,20325538,20326715,20329173,20333253	20311752,20313801,20316560,20317974,20325653,20326793,20329373,20333312	0.687500
liver_male_adult_32_years	chr5	66690170	66690213	66690173	+	RAMPAGE_only	79	85	281	11.497523	5.693721	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66738030	66788705	MAST4|ENST00000478569.1	+	66738030,66759708,66783334,66788669	66738257,66759862,66783384,66788705	0.733096
liver_male_adult_32_years	chr3	52807088	52807104	52807103	+	RAMPAGE_only	31	31	55	2.250405	4.794729	chr3	52807123	52807216	LINE|CR1|X7B_LINE	+	chr3	52804805	52808796	ITIH3|ENST00000493136.1	+	52804805,52806292,52806900,52807746,52808109,52808551	52806138,52806406,52807105,52807916,52808221,52808796	1.000000
liver_male_adult_32_years	chr6	44126632	44126633	44126632	+	High_confidence	137	137	162	6.628465	6.107947	chr6	44126578	44126686	LINE|CR1|X7A_LINE	-	chr6	44126599	44140328	STRG.52500.2	+	44126599,44126797,44127722,44132216,44134560,44135016,44135327,44136348,44138479,44139466,44139707,44140251	44126715,44127141,44129455,44132289,44134743,44135096,44135366,44136439,44138517,44139609,44139759,44140328	0.932099
liver_male_adult_32_years	chr1	59515627	59515654	59515653	+	High_confidence	80	86	210	8.592455	6.188901	chr1	59515522	59515871	LTR|ERVL-MaLR|THE1A	+	chr1	59515628	59762730	FGGY|NM_001278224.1	+	59515628,59554123,59607802,59625987,59638227,59660218,59667282,59674038,59757930,59762502	59515795,59554227,59607910,59626049,59638375,59660293,59667403,59674133,59757992,59762730	0.728571
liver_male_adult_32_years	chr5	18746155	18746188	18746155	-	High_confidence	5	5	14	0.572830	3.521641	chr5	18746065	18746356	LTR|ERV1|LTR12F	-	chr5	18744929	18746168	STRG.42070.1	-	18744929	18746168	0.857143
liver_male_adult_32_years	chr19	41001876	41001878	41001877	+	High_confidence	6	7	10	0.409165	2.947703	chr19	41001677	41002304	LINE|L2|L2a	-	chr19	41001600	41017373	STRG.123240.10	+	41001600,41004296,41006904,41009218,41009993,41012673,41016645	41004163,41004446,41007065,41009395,41012485,41012815,41017373	0.900000
liver_male_adult_32_years	chr16	66503688	66503689	66503688	-	RAMPAGE_only	18	18	20	0.818329	3.621928	chr16	66503539	66503681	LINE|L1|L1ME4a	-	chr16	66495783	66504896	STRG.111843.4	-	66495783	66504896	0.850000
liver_male_adult_32_years	chr5	140700445	140700455	140700445	+	High_confidence	672	1034	2688	109.983422	4.723444	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.984747
liver_male_adult_32_years	chr1	174874418	174874439	174874438	+	High_confidence	8	8	31	1.268410	4.418157	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874457	174958182	RABGAP1L|ENST00000478442.5	+	174874457,174877391,174957456,174957890	174874506,174877605,174957549,174958182	0.645161
liver_male_adult_32_years	chr16	20674403	20674408	20674404	+	High_confidence	9	14	31	1.268410	4.281728	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674300	20682176	STRG.110633.1	+	20674300,20674673,20679157	20674356,20674822,20682176	0.870968
liver_male_adult_32_years	chr11	119046586	119046588	119046586	-	RAMPAGE_only	8	13	17	0.695580	3.280639	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.941176
liver_male_adult_32_years	chr7	138087236	138087237	138087236	-	High_confidence	31	35	42	1.718491	4.853056	chr7	138087026	138087384	LTR|ERVL-MaLR|MLT1A1	-	chr7	138003568	138087246	STRG.63921.9	-	138003568,138011445,138011726,138044342	138011344,138011557,138011816,138087246	0.857143
liver_male_adult_32_years	chr2	43486671	43486676	43486675	-	RAMPAGE_only	6	6	13	0.531914	3.238901	chr2	43486640	43486924	DNA|hAT-Charlie|MER102b	-	chr2	43230851	43508753	STRG.14591.7	-	43230851,43232712,43279764,43286907,43291695,43292103,43292833,43320445,43344121,43397970,43428099,43430212,43485233,43486436,43487572,43505621,43508647	43231343,43232882,43279896,43287061,43291768,43292222,43293213,43320540,43344237,43398139,43428231,43430302,43485325,43487528,43498955,43505735,43508753	0.846154
liver_male_adult_32_years	chr19	9140390	9140428	9140427	+	High_confidence	22	22	95	3.887063	5.489820	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.768421
liver_male_adult_32_years	chr7	103152898	103152899	103152898	+	RAMPAGE_only	17	17	23	0.941078	3.749903	chr7	103152807	103153195	LTR|ERV1|HERVE_a-int	+	chr7	103194634	103201787	STRG.62769.3	+	103194634	103201787	0.826087
liver_male_adult_32_years	chr4	71754977	71755084	71754977	-	High_confidence	33	34	154	6.301134	5.086474	chr4	71754606	71754940	DNA|hAT-Charlie|MER58B	-	chr4	71741707	71754478	GC|ENST00000503364.5	-	71741707,71746150,71754410	71741870,71746205,71754478	0.512987
liver_male_adult_32_years	chr9	39810023	39810034	39810033	-	High_confidence	32	32	61	2.495904	5.315823	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	STRG.72807.4	-	39807694	39810013	0.688525
liver_male_adult_32_years	chr11	108224064	108224075	108224074	+	High_confidence	11	11	24	0.981995	4.061482	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.750000
liver_male_adult_32_years	chr1	112850264	112850284	112850283	+	High_confidence	5	5	9	0.368248	3.000000	chr1	112850184	112850373	SINE|MIR|MIR	+	chr1	112850075	112877867	AL390729.1|ENST00000422022.1	+	112850075,112877729	112850427,112877867	0.888889
liver_male_adult_32_years	chr11	86955933	86955950	86955949	+	High_confidence	3	5	10	0.409165	3.169925	chr11	86955862	86955972	SINE|MIR|MIRb	+	chr11	86956090	87000490	AP001528.1|ENST00000531827.1	+	86956090,86957981,86999875	86956260,86958026,87000490	0.500000
liver_male_adult_32_years	chr7	96503508	96503523	96503515	-	High_confidence	3	3	9	0.368248	3.000000	chr7	96503114	96503968	LTR|Gypsy|MamGypsy2-I	-	chr7	96483712	96503510	SEM1|ENST00000611360.4	-	96483712,96486202,96496283,96503482	96483988,96486417,96496341,96503510	0.555556
liver_male_adult_32_years	chr15	40650121	40650158	40650126	+	High_confidence	10	21	58	2.373154	5.120186	chr15	40650091	40650181	LINE|L2|L2c	+	chr15	40650126	40654977	KNL1|ENST00000532347.1	+	40650126,40650543,40651470,40652004,40654908	40650378,40650583,40651572,40652105,40654977	0.758621
liver_male_adult_32_years	chr9	82580699	82580709	82580699	-	RAMPAGE_only	4	4	8	0.327332	2.521641	chr9	82580538	82580914	LINE|L1|L1MB4	+	chr9	82562075	82583701	STRG.74350.2	-	82562075,82562869,82583590	82562369,82563125,82583701	0.625000
liver_male_adult_32_years	chr9	34641329	34641330	34641329	+	RAMPAGE_only	7	7	7	0.286415	2.521641	chr9	34641261	34641421	SINE|Alu|AluJb	-	chr9	34646588	34650598	GALT|NM_000155.3	+	34646588,34647088,34647491,34647656,34647831,34648114,34648333,34648761,34648997,34649409,34650368	34646786,34647258,34647567,34647705,34647961,34648171,34648456,34648894,34649081,34649564,34650598	0.857143
liver_male_adult_32_years	chr9	111284841	111284875	111284874	-	High_confidence	51	53	79	3.232400	5.354051	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.822785
liver_male_adult_32_years	chr1	43247960	43247961	43247960	-	RAMPAGE_only	10	10	12	0.490997	2.913977	chr1	43247843	43248160	SINE|Alu|AluY	+	chr1	43194683	43250391	EBNA1BP2|ENST00000474566.1	-	43194683,43206345,43211449,43215265,43250218	43194949,43206392,43211567,43215393,43250391	0.666667
liver_male_adult_32_years	chr4	73104198	73104245	73104198	-	High_confidence	71	72	346	14.157092	6.350895	chr4	73103951	73104200	DNA|hAT-Charlie|Charlie2b	-	chr4	73100860	73104080	ANKRD17|ENST00000560507.1	-	73100860,73102375,73104002	73101173,73102547,73104080	0.520231
liver_male_adult_32_years	chr5	25963826	25963839	25963826	+	High_confidence	15	15	36	1.472992	4.432620	chr5	25963846	25964173	LTR|ERV1|MER65-int	+	chr5	25963844	25965356	STRG.42334.1	+	25963844	25965356	0.861111
liver_male_adult_32_years	chr1	21551069	21551163	21551162	-	High_confidence	61	62	464	18.985234	6.221863	chr1	21550998	21551128	LINE|L1|L1ME3A	-	chr1	21532182	21551205	STRG.1200.2	-	21532182	21551205	0.997845
liver_male_adult_32_years	chr22	29766482	29766501	29766482	+	High_confidence	3	3	9	0.368248	2.750000	chr22	29766164	29766544	LINE|L2|L2b	+	chr22	29767368	29770413	UQCR10|NM_001003684.1	+	29767368,29769677	29767607,29770413	0.666667
liver_male_adult_32_years	chr11	67022704	67022721	67022718	+	High_confidence	4	4	15	0.613747	3.235926	chr11	67022615	67022807	SINE|MIR|MIRb	+	chr11	67022718	67050863	SYT12|NM_001177880.1	+	67022718,67030121,67034644,67039810,67043637,67044592,67045743,67048583	67022925,67030178,67034838,67040203,67043853,67044713,67045877,67050863	0.733333
liver_male_adult_32_years	chr9	20658338	20658347	20658338	+	High_confidence	5	5	14	0.572830	3.334679	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658349	20794868	STRG.71888.5	+	20658349,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20794868	0.785714
liver_male_adult_32_years	chr5	7851470	7851492	7851491	-	High_confidence	3	3	8	0.327332	3.000000	chr5	7851387	7851489	LINE|L2|L2b	-	chr5	7830377	7851490	C5orf49|ENST00000399810.6	-	7830377,7835381,7850874	7832029,7835498,7851490	1.000000
liver_male_adult_32_years	chr15	32677404	32677405	32677404	+	High_confidence	5	5	8	0.327332	2.750000	chr15	32677294	32677614	LTR?|LTR?|MamRep605	+	chr15	32677559	32697096	STRG.105461.9	+	32677559,32679765,32684556	32677744,32679915,32697096	1.000000
liver_male_adult_32_years	chr22	46637248	46637331	46637309	-	High_confidence	18	18	134	5.482805	4.512100	chr22	46637256	46637538	SINE|Alu|AluYc	-	chr22	46635812	46637861	STRG.131294.1	-	46635812	46637861	0.977612
liver_male_adult_32_years	chr13	108914711	108914717	108914716	+	RAMPAGE_only	4	5	8	0.327332	2.500000	chr13	108914656	108914942	SINE|Alu|AluSz	-	chr13	108915844	109127640	STRG.99698.1	+	108915844,108957687,108961538,108962423,108964760,108992375,109008896,109019710,109046915,109052299,109055045,109055389,109100784,109120369,109125111,109127281	108916033,108957799,108961656,108962495,108964902,108992448,109009049,109019911,109046991,109052475,109055126,109055595,109100887,109120466,109125358,109127640	0.875000
liver_male_adult_32_years	chr5	80229243	80229299	80229256	-	RAMPAGE_only	62	80	324	13.256930	5.826651	chr5	80229059	80229322	SINE|Alu|AluSz	-	chr5	80177314	80255198	SERINC5|ENST00000513907.1	-	80177314,80177885,80202885,80255081	80177397,80178064,80203053,80255198	0.805556
liver_male_adult_32_years	chr14	94296363	94296367	94296363	+	RAMPAGE_only	4	4	12	0.490997	2.845351	chr14	94296169	94296532	LTR|ERVL-MaLR|THE1B	+	chr14	94293356	94303440	STRG.104401.1	+	94293356	94303440	0.916667
liver_male_adult_32_years	chr19	38762979	38763000	38762979	-	High_confidence	6	6	15	0.613747	3.378783	chr19	38762895	38763152	SINE|Alu|AluJo	+	chr19	38730677	38763643	STRG.123150.4	-	38730677,38730964,38731106,38733702,38734141,38734318,38734812,38735369,38736109,38736551,38737155,38737474,38738272,38738417,38738573,38740050,38741776,38742409,38743032,38743620,38747180	38730878,38731023,38731223,38733781,38734204,38734389,38734870,38735544,38736318,38736563,38737388,38737638,38738347,38738503,38738648,38740219,38741910,38742528,38743473,38746407,38763643	0.933333
liver_male_adult_32_years	chr1	21551266	21551311	21551266	+	High_confidence	331	363	1784	72.994950	6.348483	chr1	21551216	21551436	LINE|L2|L2c	-	chr1	21551278	21578012	ALPL|ENST00000374832.5	+	21551278,21553977,21560625,21561096,21563109,21564040,21568103,21570304,21573664,21575732,21576521,21577382	21551428,21554142,21560745,21561212,21563284,21564216,21568247,21570374,21573799,21575924,21576641,21578012	0.739910
liver_male_adult_32_years	chr16	19488583	19488609	19488583	+	RAMPAGE_only	5	5	10	0.409165	2.921928	chr16	19488468	19488935	LINE|L2|L2a	+	chr16	19486940	19498277	TMC5|ENST00000574033.1	+	19486940,19490394,19492149,19494261,19497120,19497919	19487020,19490568,19492228,19494366,19497163,19498277	0.900000
liver_male_adult_32_years	chr4	158173024	158173050	158173024	-	High_confidence	23	28	42	1.718491	4.898153	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.928571
liver_male_adult_32_years	chr12	57439061	57439074	57439073	-	RAMPAGE_only	10	10	29	1.186577	4.280395	chr12	57438933	57439147	DNA|hAT-Blackjack|MER63A	+	chr12	57280460	57435532	STRG.93166.8	-	57280460,57283823,57289008,57292571,57295398,57296410,57297327,57298089,57299351,57300094,57303175,57310263,57395748,57414388,57433596	57280530,57284056,57289040,57292667,57295507,57296551,57297387,57298168,57299478,57300181,57303217,57310463,57414059,57427627,57435532	0.620690
liver_male_adult_32_years	chr3	179740061	179740083	179740080	+	RAMPAGE_only	3	4	15	0.613747	3.456565	chr3	179740053	179740112	SINE|MIR|MIR	+	chr3	179721563	179761151	USP13|ENST00000497155.1	+	179721563,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179761111	179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179761151	0.866667
liver_male_adult_32_years	chr6	143707951	143707973	143707968	+	RAMPAGE_only	15	16	42	1.718491	4.510900	chr6	143707720	143708120	LTR|ERVL-MaLR|MSTA	-	chr6	143678172	143712336	PHACTR2|ENST00000545919.1	+	143678172,143712015	143678209,143712336	0.738095
liver_male_adult_32_years	chr1	59515713	59515714	59515713	+	High_confidence	20	20	26	1.063828	4.392747	chr1	59515522	59515871	LTR|ERVL-MaLR|THE1A	+	chr1	59515628	59762730	FGGY|NM_001278224.1	+	59515628,59554123,59607802,59625987,59638227,59660218,59667282,59674038,59757930,59762502	59515795,59554227,59607910,59626049,59638375,59660293,59667403,59674133,59757992,59762730	0.653846
liver_male_adult_32_years	chr7	116811016	116811018	116811017	+	High_confidence	36	47	53	2.168572	5.092562	chr7	116810958	116811034	SINE|tRNA-RTE|MamSINE1	+	chr7	116810984	116848465	STRG.63244.1	+	116810984,116835550,116838595	116811102,116835648,116848465	0.905660
liver_male_adult_32_years	chr22	46171512	46171519	46171512	+	RAMPAGE_only	4	4	9	0.368248	3.169925	chr22	46171297	46171902	LINE|L2|L2a	-	chr22	46176747	46235403	PPARA|ENST00000402126.1	+	46176747,46198344,46215172,46218262,46219811,46231791,46235132	46176836,46198591,46215333,46218401,46220014,46232239,46235403	0.666667
liver_male_adult_32_years	chr2	240022172	240022173	240022172	-	RAMPAGE_only	5	5	8	0.327332	2.750000	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
liver_male_adult_32_years	chr9	39809803	39809859	39809856	-	High_confidence	12	12	56	2.291321	4.349935	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.910714
liver_male_adult_32_years	chr12	643625	643636	643627	-	High_confidence	23	45	78	3.191483	5.324847	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.576923
liver_male_adult_32_years	chr16	75376726	75376731	75376726	-	RAMPAGE_only	6	6	14	0.572830	3.378783	chr16	75376668	75377149	LTR|ERV1|MER66B	+	chr16	75293905	75363035	CFDP1|ENST00000564793.1	-	75293905,75305023,75362874	75294042,75305182,75363035	0.714286
liver_male_adult_32_years	chr9	129488684	129488891	129488856	+	High_confidence	325	329	1974	80.769075	5.715065	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.981256
liver_male_adult_32_years	chr15	75626279	75626305	75626304	-	High_confidence	21	21	43	1.759407	3.180147	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
liver_male_adult_32_years	chr20	3795750	3795823	3795750	+	High_confidence	24	28	166	6.792131	5.552787	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795758	3803175	STRG.125024.4	+	3795758,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107	3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803175	1.000000
liver_male_adult_32_years	chr5	79030593	79030610	79030609	-	High_confidence	3	3	7	0.286415	2.584963	chr5	79030369	79030677	SINE|Alu|AluSx	+	chr5	79026435	79030608	DMGDH|ENST00000523201.1	-	79026435,79028432,79029903,79030520	79026581,79028650,79030034,79030608	0.571429
liver_male_adult_32_years	chr6	2990736	2990749	2990740	-	RAMPAGE_only	5	5	21	0.859245	3.008695	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.952381
liver_male_adult_32_years	chr19	49928690	49928789	49928699	+	High_confidence	15	15	94	3.846146	5.621710	chr19	49928548	49928701	SINE|MIR|MIRb	-	chr19	49928701	49933298	ATF5|ENST00000595125.5	+	49928701,49929242,49930731,49932421	49929006,49929400,49931028,49933298	0.978723
liver_male_adult_32_years	chr16	20575574	20575575	20575574	-	High_confidence	6	6	7	0.286415	2.584963	chr16	20575366	20575775	LTR|ERVL|MLT2A1	-	chr16	20559270	20576277	ACSM2B|ENST00000566384.5	-	20559270,20564668,20575421,20576206	20559447,20564853,20575549,20576277	0.714286
liver_male_adult_32_years	chr3	195722481	195722526	195722495	+	RAMPAGE_only	50	53	131	5.360055	4.704945	chr3	195722358	195722503	SINE|MIR|MIRc	-	chr3	195720994	195733504	MUC20|ENST00000320736.10	+	195720994,195724679,195725672,195729647,195733149	195721083,195725159,195726572,195729739,195733504	0.709924
liver_male_adult_32_years	chr19	51795162	51795187	51795162	+	High_confidence	3	3	17	0.695580	3.454822	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.941176
liver_male_adult_32_years	chr13	46097235	46097239	46097235	+	High_confidence	9	9	24	0.981995	4.220176	chr13	46096795	46098485	LTR|ERVL|ERV3-16A3_I-int	+	chr13	46097225	46097881	STRG.98089.1	+	46097225	46097881	0.750000
liver_male_adult_32_years	chr6	118651542	118651602	118651563	-	High_confidence	18	18	107	4.378060	5.728066	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.925234
liver_male_adult_32_years	chr1	20685269	20685298	20685269	-	High_confidence	3	3	11	0.450081	3.121928	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.909091
liver_male_adult_32_years	chr9	134217849	134217892	134217849	-	RAMPAGE_only	7	7	34	1.391159	4.513646	chr9	134217377	134217858	DNA|hAT-Charlie|MER20B	-	chr9	134208177	134220394	STRG.77542.2	-	134208177,134215683,134217840	134209534,134217742,134220394	0.882353
liver_male_adult_32_years	chr22	46637353	46637386	46637385	+	RAMPAGE_only	30	32	106	4.337144	6.037869	chr22	46637256	46637538	SINE|Alu|AluYc	-	chr22	46635800	46679683	STRG.131276.2	+	46635800,46637839,46658186,46661380,46663039,46663837,46664025,46665614,46666824,46668095,46668688,46668798,46672842,46673669,46674656,46675467,46676599,46677146	46637516,46637960,46658307,46661442,46663172,46663863,46664117,46665706,46666873,46668167,46668732,46668908,46672997,46673814,46674750,46675552,46676668,46679683	0.783019
liver_male_adult_32_years	chr12	102923573	102923574	102923573	-	RAMPAGE_only	57	58	58	2.373154	4.437701	chr12	102923568	102923702	LINE|L1|L1MC5	-	chr12	102836884	102917603	PAH|ENST00000553106.5	-	102836884,102840399,102843645,102844335,102846894,102851686,102852814,102855135,102866595,102877461,102894734,102912790,102917070	102839218,102840515,102843779,102844431,102846951,102851756,102852950,102855332,102866663,102877550,102894918,102912898,102917603	0.965517
liver_male_adult_32_years	chr1	206053151	206053173	206053172	+	High_confidence	8	8	28	1.145661	4.014147	chr1	206053000	206053902	LTR|ERV1|Harlequin-int	+	chr1	206052844	206062257	BX571818.1|ENST00000582596.5	+	206052844,206060400,206061344,206061661	206053265,206060449,206061397,206062257	0.571429
liver_male_adult_32_years	chr2	62461905	62461928	62461927	-	High_confidence	2	2	6	0.245499	2.584963	chr2	62461773	62461912	SINE|MIR|MIR3	-	chr2	62455175	62461936	STRG.15540.1	-	62455175,62461727	62461163,62461936	1.000000
liver_male_adult_32_years	chr7	101308293	101308317	101308293	+	High_confidence	6	8	38	1.554825	4.366091	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.894737
liver_male_adult_32_years	chr6	77369106	77369167	77369106	-	High_confidence	7	7	35	1.432076	4.862576	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77270932	77369170	STRG.53575.3	-	77270932,77273026,77350621,77368885	77271493,77273319,77350738,77369170	0.885714
liver_male_adult_32_years	chr12	124821566	124821594	124821574	-	RAMPAGE_only	6	6	20	0.818329	3.511085	chr12	124821572	124821735	SINE|MIR|MIR	+	chr12	124785819	124817707	SCARB1|ENST00000544327.1	-	124785819,124787405,124795194,124800123,124807760,124810173,124811869,124814201,124814972,124817549	124786503,124787457,124795268,124800242,124807927,124810289,124811965,124814405,124815114,124817707	0.750000
liver_male_adult_32_years	chr5	172958875	172958919	172958918	+	High_confidence	12	14	43	1.759407	3.949894	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	1.000000
liver_male_adult_32_years	chr9	111605588	111605589	111605588	+	RAMPAGE_only	5	5	8	0.327332	2.750000	chr9	111605353	111605897	LINE|L1|L1MC4	+	chr9	111604183	111605981	STRG.76202.1	+	111604183	111605981	0.875000
liver_male_adult_32_years	chr9	76608877	76608904	76608903	+	High_confidence	11	11	28	1.145661	3.567031	chr9	76608739	76609168	LTR|ERVL-MaLR|MLT1F2	+	chr9	76608902	76610774	STRG.73851.6	+	76608902,76609248	76609153,76610774	0.857143
liver_male_adult_32_years	chr3	191261123	191261141	191261123	-	RAMPAGE_only	14	15	31	1.268410	4.195816	chr3	191260148	191261156	LTR|ERV1|LTR49-int	-	chr3	191213290	191234605	OSTN-AS1|NR_133663.1	-	191213290,191217069,191218815,191228714,191229765,191234571	191213340,191217179,191218936,191228782,191229897,191234605	0.677419
liver_male_adult_32_years	chr6	26956516	26956589	26956533	-	High_confidence	3	3	27	1.104744	4.403856	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.629630
liver_male_adult_32_years	chr11	73787453	73787494	73787493	+	High_confidence	6	6	18	0.736496	3.734522	chr11	73787272	73787558	SINE|Alu|AluSx1	+	chr11	73787315	73864611	MRPL48|ENST00000310614.11	+	73787315,73805026,73808312,73825707,73844806,73859906,73863171,73864295	73787992,73805079,73808350,73825796,73844976,73860009,73863261,73864611	0.944444
liver_male_adult_32_years	chr11	73787296	73787339	73787338	+	High_confidence	10	10	26	1.063828	3.931209	chr11	73787272	73787558	SINE|Alu|AluSx1	+	chr11	73787315	73864611	MRPL48|ENST00000310614.11	+	73787315,73805026,73808312,73825707,73844806,73859906,73863171,73864295	73787992,73805079,73808350,73825796,73844976,73860009,73863261,73864611	1.000000
liver_male_adult_32_years	chr17	56912630	56912644	56912630	-	High_confidence	4	4	10	0.409165	3.121928	chr17	56912611	56912799	SINE|MIR|MIRb	+	chr17	56891582	56913472	TRIM25|ENST00000572021.5	-	56891582,56895342,56895520,56895925,56899114,56901418,56904254,56908467,56912104,56913391	56892229,56895441,56895604,56895952,56899180,56901578,56904488,56908563,56912165,56913472	0.900000
liver_male_adult_32_years	chr1	149229339	149229368	149229367	-	RAMPAGE_only	11	11	39	1.595742	4.810673	chr1	149229335	149229457	SINE|MIR|MIR3	+	chr1	149187947	149285822	STRG.7372.1	-	149187947,149197995,149198360,149201013,149240376,149261639,149266968,149285453	149190531,149198171,149198484,149201090,149240487,149261791,149267024,149285822	0.846154
liver_male_adult_32_years	chr19	49928455	49928521	49928479	+	High_confidence	11	11	45	1.841240	4.669196	chr19	49928235	49928532	SINE|Alu|AluY	+	chr19	49928701	49933298	ATF5|ENST00000595125.5	+	49928701,49929242,49930731,49932421	49929006,49929400,49931028,49933298	0.955556
liver_male_adult_32_years	chr19	4706779	4706790	4706779	-	RAMPAGE_only	4	5	11	0.450081	2.646439	chr19	4706533	4706821	SINE|Alu|AluSz	+	chr19	4690877	4704151	DPP9|ENST00000599163.5	-	4690877,4694660,4697550,4700215,4702026,4702602,4703885,4704130	4690957,4694823,4697651,4700273,4702155,4702716,4704054,4704151	0.636364
liver_male_adult_32_years	chrX	47658587	47658630	47658629	-	High_confidence	5	6	22	0.900162	2.506144	chrX	47658369	47658606	SINE|MIR|MIR	-	chrX	47651800	47659107	UXT|ENST00000485641.5	-	47651800,47652080,47657182,47657781,47658829	47651895,47652144,47657290,47657863,47659107	0.909091
liver_male_adult_32_years	chr1	28983863	28983894	28983863	+	RAMPAGE_only	5	7	24	0.981995	4.251629	chr1	28983513	28984367	LTR|ERV1|LTR1D	-	chr1	28987497	29072224	EPB41|ENST00000645111.1	+	28987497,28993329,29011864,29015691,29018223,29030399,29033092,29035825,29039253,29053103,29058588,29058810,29060421,29064981,29068732,29070363	28987905,28993542,29011907,29015767,29018442,29030487,29033245,29035923,29039426,29053312,29058645,29058852,29060484,29065158,29068768,29072224	0.916667
liver_male_adult_32_years	chr11	111791768	111791774	111791768	-	RAMPAGE_only	8	8	16	0.654663	3.750000	chr11	111791539	111791809	LINE|L2|L2c	+	chr11	111786285	111809690	ALG9|ENST00000525910.1	-	111786285,111798093,111809642	111786520,111798195,111809690	0.812500
liver_male_adult_32_years	chr10	106011435	106011469	106011439	+	High_confidence	207	220	722	29.541678	6.608069	chr10	106009563	106011791	LINE|L1|L1M1	-	chr10	106011447	106129860	STRG.82246.2	+	106011447,106043977,106063976	106043894,106063867,106129860	0.983380
liver_male_adult_32_years	chr9	134374152	134374153	134374152	+	RAMPAGE_only	9	9	11	0.450081	3.321928	chr9	134374097	134374248	SINE|MIR|MIRb	-	chr9	134369370	134444277	STRG.77582.3	+	134369370,134401395,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134392430,134401540,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134444277	0.909091
liver_male_adult_32_years	chr2	10120434	10120435	10120434	+	High_confidence	20	20	21	0.859245	3.984184	chr2	10120422	10120535	SINE|Alu|FLAM_C	+	chr2	10120697	10131418	RRM2|ENST00000641198.1	+	10120697,10122754,10122982,10123386,10123735,10124716,10126874,10127086,10128847,10129040,10129233	10120882,10122897,10123057,10123530,10123852,10124850,10126969,10127220,10128952,10129154,10131418	0.761905
liver_male_adult_32_years	chrX	139106413	139106435	139106413	-	RAMPAGE_only	6	6	11	0.450081	3.095795	chrX	139106176	139106374	SINE|MIR|MIR1_Amn	-	chrX	138857511	139203525	FGF13|ENST00000421460.1	-	138857511,138864576,139203415	138857679,138864650,139203525	1.000000
liver_male_adult_32_years	chr20	1150484	1150508	1150484	+	RAMPAGE_only	8	8	19	0.777413	3.377444	chr20	1150195	1150494	DNA|hAT-Charlie|Charlie1a	-	chr20	1135277	1189415	PSMF1|ENST00000381898.5	+	1135277,1163129,1164317,1186339,1189171	1135306,1163183,1164476,1186495,1189415	0.578947
liver_male_adult_32_years	chr3	122646815	122646843	122646815	-	High_confidence	39	43	87	3.559731	5.507871	chr3	122646095	122647463	LINE|L1|HAL1	+	chr3	122611886	122646859	STRG.29824.3	-	122611886,122637645	122637142,122646859	0.977011
liver_male_adult_32_years	chr11	73787548	73787577	73787548	+	High_confidence	1	1	9	0.368248	2.750000	chr11	73787272	73787558	SINE|Alu|AluSx1	+	chr11	73787315	73864611	MRPL48|ENST00000310614.11	+	73787315,73805026,73808312,73825707,73844806,73859906,73863171,73864295	73787992,73805079,73808350,73825796,73844976,73860009,73863261,73864611	0.777778
liver_male_adult_32_years	chr1	59309882	59309914	59309898	+	High_confidence	3	3	15	0.613747	3.640224	chr1	59309693	59309987	SINE|Alu|AluSz6	+	chr1	59310063	59788840	FGGY|ENST00000634399.1	+	59310063,59321535,59339957,59378748,59456960,59474101,59512310,59554123,59607802,59625987,59638227,59641279,59660218,59667282,59674038,59757930,59762502,59772767,59774050,59788618	59310176,59321750,59340069,59378837,59457076,59474202,59512439,59554227,59607910,59626049,59638375,59641351,59660293,59667403,59674133,59757992,59762669,59773037,59774124,59788840	0.666667
liver_male_adult_32_years	chr3	28291847	28291848	28291847	+	High_confidence	12	12	16	0.654663	3.323231	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.750000
liver_male_adult_32_years	chr1	54865519	54865520	54865519	-	RAMPAGE_only	6	6	6	0.245499	2.584963	chr1	54865506	54865684	SINE|MIR|MIRc	-	chr1	54852366	54886836	DHCR24|ENST00000647585.1	-	54852366,54853433,54854036,54865302,54871349,54875092,54875941,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54883773,54886836	1.000000
liver_male_adult_32_years	chr19	4152676	4152718	4152715	+	High_confidence	11	11	22	0.900162	3.272804	chr19	4152694	4152785	LINE|L2|L2b	-	chr19	4153600	4173054	CREB3L3|NM_032607.2	+	4153600,4154898,4156994,4159663,4164502,4168350,4170139,4171090,4171382,4171655	4153774,4155027,4157295,4159782,4164640,4168457,4170208,4171175,4171479,4173054	0.954545
liver_male_adult_32_years	chr5	134415991	134415992	134415991	-	RAMPAGE_only	9	9	14	0.572830	3.392747	chr5	134415861	134416068	SINE|Alu|AluJo	+	chr5	134402064	134411907	CDKN2AIPNL|NM_080656.2	-	134402064,134409902,134411615	134402926,134410002,134411907	0.571429
liver_male_adult_32_years	chr7	2242922	2242923	2242922	+	High_confidence	9	9	9	0.368248	2.725481	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
liver_male_adult_32_years	chr21	38905299	38905300	38905299	-	High_confidence	13	13	17	0.695580	2.733459	chr21	38905254	38905659	LTR|ERV1|LTR9B	-	chr21	38829150	38905478	STRG.129066.6	-	38829150,38901900	38836763,38905478	0.941176
liver_male_adult_32_years	chr1	23838619	23838644	23838619	-	High_confidence	3	3	14	0.572830	2.968919	chr1	23837780	23838651	LTR|ERV1|LTR1A2	+	chr1	23801886	23838620	HMGCL|ENST00000374487.6	-	23801886,23804399,23808134,23810735,23814189,23816674,23817475,23820509,23826083,23838063	23802564,23804525,23808323,23810799,23814338,23816770,23817583,23820593,23826183,23838620	0.857143
liver_male_adult_32_years	chr8	17893169	17893179	17893169	-	RAMPAGE_only	3	3	7	0.286415	2.521641	chr8	17892918	17893218	SINE|Alu|AluSz6	+	chr8	17864583	17891809	FGL1|ENST00000518650.5	-	17864583,17868547,17868915,17874018,17874361,17881998,17885491,17891680	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891809	0.571429
liver_male_adult_32_years	chr4	71803927	71803928	71803927	-	High_confidence	71	80	82	3.355149	5.789063	chr4	71803761	71803898	SINE|MIR|MIRc	-	chr4	71741692	71804041	GC|NM_001204307.1	-	71741692,71746150,71752517,71754410,71754977,71756711,71758041,71763407,71763803,71765431,71768300,71769330,71783960,71803925	71741870,71746205,71752650,71754508,71755107,71756914,71758171,71763502,71763936,71765643,71768433,71769400,71784054,71804041	0.975610
liver_male_adult_32_years	chr4	3441704	3441740	3441704	+	High_confidence	8	8	19	0.777413	3.794653	chr4	3441662	3441756	LINE|L2|L2b	-	chr4	3441886	3449495	HGFAC|ENST00000382774.7	+	3441886,3442731,3443049,3443340,3444038,3444310,3444622,3444818,3445264,3446041,3447491,3447894,3448127,3449236	3442118,3442912,3443146,3443420,3444161,3444442,3444733,3444993,3445350,3446294,3447631,3448035,3448276,3449495	0.894737
liver_male_adult_32_years	chr1	9454884	9454906	9454889	-	High_confidence	26	27	100	4.091645	5.331081	chr1	9454839	9454966	SINE|Alu|AluSx4	+	chr1	9441018	9455694	STRG.533.2	-	9441018,9455380	9454938,9455694	0.940000
liver_male_adult_32_years	chr7	11193226	11193247	11193226	+	High_confidence	2	2	9	0.368248	2.947703	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.888889
liver_male_adult_32_years	chr6	38687121	38687139	38687135	-	RAMPAGE_only	10	18	33	1.350243	4.199699	chr6	38687125	38687432	LTR|ERVL|LTR16C	+	chr6	38675942	38683215	GLO1|ENST00000470973.1	-	38675942,38682011,38682807	38677383,38682101,38683215	0.727273
liver_male_adult_32_years	chr20	44450163	44450185	44450163	-	High_confidence	2	3	9	0.368248	2.947703	chr20	44450139	44450287	LINE|L1|L1ME4b	+	chr20	44448295	44450156	STRG.126727.1	-	44448295	44450156	1.000000
liver_male_adult_32_years	chr8	28084056	28084108	28084072	-	High_confidence	28	29	195	7.978708	5.850766	chr8	28084027	28084332	SINE|Alu|AluSx1	+	chr8	28021963	28083871	NUGGC|ENST00000413272.6	-	28021963,28026961,28029265,28030309,28031242,28033539,28041050,28045526,28047506,28055964,28058257,28060425,28064521,28067513,28068215,28069543,28070251,28074367,28083774	28023462,28027052,28029402,28030418,28031381,28033697,28041215,28045660,28047612,28056054,28058276,28060601,28064731,28067744,28068438,28069652,28070356,28074456,28083871	0.589744
liver_male_adult_32_years	chr12	120316914	120316975	120316914	+	High_confidence	5	5	38	1.554825	5.058814	chr12	120316786	120316989	SINE|MIR|MIR	-	chr12	120316901	120326150	STRG.96172.1	+	120316901	120326150	0.947368
liver_male_adult_32_years	chr8	123202348	123202415	123202414	-	High_confidence	3644	3818	15660	640.751632	3.932127	chr8	123202116	123202636	LINE|L2|L2b	+	chr8	123201214	123202455	STRG.69832.2	-	123201214	123202455	0.974521
liver_male_adult_32_years	chr11	67886471	67886535	67886471	+	High_confidence	119	135	575	23.526960	6.071810	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.819130
liver_male_adult_32_years	chr3	150736582	150736586	150736585	-	High_confidence	25	46	68	2.782319	5.033348	chr3	150736563	150736695	DNA|hAT-Charlie|MER5B	+	chr3	150735412	150736613	STRG.31392.2	-	150735412	150736613	0.955882
liver_male_adult_32_years	chr5	109319871	109319873	109319871	-	RAMPAGE_only	4	8	11	0.450081	2.846439	chr5	109319504	109320040	LTR|ERVL|MER54A	-	chr5	109295877	109326369	STRG.45763.6	-	109295877,109321393	109320635,109326369	0.545455
liver_male_adult_32_years	chr7	11207546	11207584	11207546	+	RAMPAGE_only	5	5	24	0.981995	3.788755	chr7	11207387	11207761	LTR|ERVL|LTR16E1	-	chr7	11194703	11285890	STRG.58389.4	+	11194703,11197309,11244257,11248292	11194784,11197444,11244479,11285890	0.625000
liver_male_adult_32_years	chr1	26944004	26944011	26944004	+	RAMPAGE_only	6	7	15	0.613747	3.521641	chr1	26943905	26944193	SINE|Alu|AluY	-	chr1	26921725	26946862	NUDC|ENST00000321265.9	+	26921725,26924088,26941456,26941752,26942659,26942870,26945389,26945567,26946129	26921929,26924166,26941660,26941818,26942776,26943065,26945473,26945686,26946862	0.866667
liver_male_adult_32_years	chr3	187041593	187041663	187041662	+	RAMPAGE_only	5	5	24	0.981995	3.855389	chr3	187041603	187041758	SINE|MIR|MIRb	+	chr3	187025478	187043084	ST6GAL1|ENST00000423451.5	+	187025478,187038741,187042653	187025517,187038873,187043084	1.000000
liver_male_adult_32_years	chr9	104904524	104904564	104904563	-	RAMPAGE_only	14	16	34	1.391159	3.505862	chr9	104904287	104904581	SINE|Alu|AluSc	+	chr9	104861437	104928139	ABCA1|ENST00000374733.1	-	104861437,104883038,104884426,104889101,104927934	104861800,104883157,104884568,104889195,104928139	0.911765
liver_male_adult_32_years	chr6	11934029	11934030	11934029	+	High_confidence	120	121	122	4.991807	4.977914	chr6	11932842	11934427	LTR|ERV1|LTR12C	+	chr6	11934040	11935829	STRG.50495.1	+	11934040	11935829	0.926230
liver_male_adult_32_years	chr6	135830504	135830527	135830507	-	High_confidence	62	68	221	9.042536	5.473705	chr6	135830498	135830574	LINE|L2|L2a	+	chr6	135803434	135830546	STRG.56113.1	-	135803434,135813091	135807318,135830546	0.968326
liver_male_adult_32_years	chr1	52912873	52912919	52912918	-	High_confidence	11	11	27	1.104744	4.310443	chr1	52912718	52912985	SINE|Alu|AluSp	-	chr1	52899173	52912830	ECHDC2|ENST00000487866.5	-	52899173,52904645,52905033,52906518,52907867,52911565,52911722,52912753	52899224,52904833,52905090,52906611,52907954,52911653,52912021,52912830	0.555556
liver_male_adult_32_years	chr1	31579402	31579407	31579402	-	High_confidence	6	6	11	0.450081	2.646439	chr1	31579314	31579442	SINE|MIR|MIRb	+	chr1	31578330	31579494	STRG.1538.1	-	31578330	31579494	0.727273
liver_male_adult_32_years	chr11	121586199	121586223	121586199	+	RAMPAGE_only	2	2	17	0.695580	3.030639	chr11	121585554	121586209	LINE|L1|L1ME4b	-	chr11	121576837	121629678	SORL1|ENST00000534286.5	+	121576837,121577280,121583457,121586221,121588019,121589258,121590039,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121577038,121577400,121583583,121586329,121588151,121589390,121590174,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121629678	0.588235
liver_male_adult_32_years	chr22	37110520	37110536	37110520	-	High_confidence	4	6	13	0.531914	3.238901	chr22	37110468	37110704	DNA|hAT-Charlie|MER33	+	chr22	37065435	37109713	TMPRSS6|ENST00000406856.7	-	37065435,37066825,37068615,37069072,37070483,37070915,37073531,37074609,37075134,37084294,37084726,37086282,37089577,37095550,37095905,37096647,37098415,37103215,37109502	37066238,37066962,37068681,37069344,37070652,37071032,37073645,37074708,37075280,37084404,37084839,37086419,37089782,37095592,37096090,37096715,37098549,37103418,37109713	0.846154
liver_male_adult_32_years	chr21	38905058	38905059	38905058	-	High_confidence	4	4	7	0.286415	2.584963	chr21	38904766	38905099	LTR|ERVL|MLT2B1	+	chr21	38860952	38905478	STRG.129066.5	-	38860952,38901900	38888112,38905478	0.714286
liver_male_adult_32_years	chr12	7112301	7112311	7112310	+	RAMPAGE_only	3	3	8	0.327332	2.521641	chr12	7112252	7112364	LINE|L1|L1MEf	+	chr12	7108570	7121027	C1RL-AS1|ENST00000382215.3	+	7108570,7110297,7111024,7112006,7115129,7118898,7119499,7120505	7108947,7110572,7111606,7112064,7115219,7119026,7119553,7121027	0.500000
liver_male_adult_32_years	chr15	60402874	60402893	60402886	-	High_confidence	23	32	71	2.905068	5.053794	chr15	60402666	60403161	LINE|L2|L2c	+	chr15	60364428	60402883	ANXA2|ENST00000557904.5	-	60364428,60382341,60386027,60402768	60364523,60382441,60386086,60402883	0.704225
liver_male_adult_32_years	chr1	19980362	19980363	19980362	-	High_confidence	50	70	70	2.864152	5.209561	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	0.900000
liver_male_adult_32_years	chr1	234960545	234960571	234960545	-	RAMPAGE_only	3	3	16	0.654663	3.577820	chr1	234960288	234960590	SINE|Alu|AluSx1	+	chr1	234953178	234965138	STRG.11924.2	-	234953178,234960281	234959916,234965138	0.937500
liver_male_adult_32_years	chr3	58526765	58526800	58526765	-	High_confidence	73	73	113	4.623559	5.065322	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	0.982301
liver_male_adult_32_years	chr16	56226453	56226471	56226470	+	RAMPAGE_only	4	5	11	0.450081	3.277613	chr16	56226303	56226477	DNA|hAT-Blackjack|MER63A	-	chr16	56192234	56290598	STRG.111612.12	+	56192234,56192573,56275930,56277796	56192353,56192616,56277774,56290598	0.545455
liver_male_adult_32_years	chr5	997289	997314	997289	-	High_confidence	2	2	8	0.327332	2.807355	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.875000
liver_male_adult_32_years	chr1	88647466	88647491	88647478	+	RAMPAGE_only	22	22	78	3.191483	4.941042	chr1	88647368	88647565	LTR|ERVL-MaLR|MLT1O	-	chr1	88684143	88836255	PKN2|NM_006256.3	+	88684143,88740987,88760221,88770351,88771420,88771662,88784638,88786103,88804390,88804845,88805496,88805890,88807312,88807528,88807683,88813556,88821940,88824309,88828480,88832743,88833076,88833244	88684628,88741288,88760376,88770469,88771566,88771879,88784824,88786213,88804534,88804921,88805671,88806017,88807443,88807604,88807775,88813733,88822003,88824386,88828623,88832851,88833157,88836255	0.615385
liver_male_adult_32_years	chr7	29376372	29376396	29376393	+	RAMPAGE_only	96	109	260	10.638277	5.805173	chr7	29376417	29376587	DNA|hAT-Charlie|MER5A	+	chr7	29396647	29401281	CHN2|ENST00000491856.1	+	29396647,29400542	29398486,29401281	0.823077
liver_male_adult_32_years	chr1	52915235	52915236	52915235	-	RAMPAGE_only	8	8	11	0.450081	3.121928	chr1	52915226	52915373	DNA|hAT-Charlie|Charlie19a	-	chr1	52904788	52914077	ECHDC2|ENST00000487851.5	-	52904788,52907867,52911565,52911722,52913894	52904833,52907954,52911653,52911790,52914077	0.545455
liver_male_adult_32_years	chr20	407361	407362	407361	+	High_confidence	14	14	19	0.777413	3.794653	chr20	406837	407578	LINE|L2|L2a	-	chr20	407497	417822	RBCK1|ENST00000411647.5	+	407497,408690,409880,417525,417731	407671,408779,410025,417619,417822	0.894737
liver_male_adult_32_years	chr4	69519842	69519852	69519851	-	RAMPAGE_only	10	12	22	0.900162	3.265957	chr4	69519504	69519916	LTR|ERV1|MER4A	+	chr4	69480164	69526014	UGT2B4|NM_001297616.1	-	69480164,69485207,69486608,69489438,69493692,69495140,69525686	69480910,69485427,69486696,69489570,69493841,69495410,69526014	0.727273
liver_male_adult_32_years	chr1	45522977	45522994	45522977	-	High_confidence	6	6	15	0.613747	3.521641	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45514506	45523047	PRDX1|ENST00000424390.1	-	45514506,45514872,45515653,45518937,45522777	45514637,45514995,45515807,45519054,45523047	0.933333
liver_male_adult_32_years	chr12	27579302	27579393	27579368	+	RAMPAGE_only	13	13	88	3.600648	5.369563	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.806818
liver_male_adult_32_years	chr3	195911388	195911389	195911388	-	High_confidence	5	5	8	0.327332	2.807355	chr3	195911141	195911438	SINE|Alu|AluJb	+	chr3	195879121	195911945	TNK2|ENST00000468819.1	-	195879121,195882285,195883156,195884811,195886976,195888425,195911793	195879175,195882328,195883309,195885033,195887047,195888606,195911945	0.750000
liver_male_adult_32_years	chr21	34512192	34512219	34512218	-	High_confidence	8	10	35	1.432076	4.422001	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.600000
liver_male_adult_32_years	chr16	72014203	72014307	72014273	-	RAMPAGE_only	10	13	65	2.659569	5.046658	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72005036	72043131	STRG.114178.25	-	72005036,72009934,72023985,72027938,72035454,72042316	72009232,72023755,72024440,72028095,72036262,72043131	0.907692
liver_male_adult_32_years	chr17	5405480	5405494	5405493	-	RAMPAGE_only	5	8	16	0.654663	3.750000	chr17	5405410	5405629	DNA|hAT-Charlie|MER20	+	chr17	5386101	5419466	NUP88|ENST00000225696.8	-	5386101,5386707,5386983,5387385,5387604,5387778,5388801,5391560,5394890,5399551,5404098,5405056,5408732,5410702,5414008,5416512,5419353	5386269,5386826,5387110,5387466,5387670,5387952,5388960,5391662,5394981,5399650,5404246,5405243,5408909,5410789,5414134,5416682,5419466	0.937500
liver_male_adult_32_years	chr3	146222436	146222472	146222466	-	High_confidence	37	40	115	4.705392	5.505376	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146200008	146222433	PLSCR4|ENST00000481701.5	-	146200008,146201034,146206525,146220814,146222064,146222199	146200039,146201077,146206761,146220925,146222092,146222433	0.991304
liver_male_adult_32_years	chr20	49772724	49772729	49772725	+	High_confidence	11	19	36	1.472992	3.701598	chr20	49772616	49772827	DNA|hAT-Charlie|MER20	-	chr20	49772999	49774536	STRG.127009.1	+	49772999,49774281	49773879,49774536	0.638889
liver_male_adult_32_years	chr2	216572611	216572614	216572613	-	RAMPAGE_only	12	20	26	1.063828	4.418296	chr2	216572472	216572653	DNA|hAT-Charlie|Charlie15a	-	chr2	216558270	216559626	STRG.22130.1	-	216558270,216559484	216558545,216559626	0.615385
liver_male_adult_32_years	chr4	73590674	73590693	73590674	-	RAMPAGE_only	18	18	63	2.577736	5.393772	chr4	73590575	73590742	LTR|ERVL|LTR86A2	+	chr4	73574570	73620412	RASSF6|ENST00000395777.6	-	73574570,73576409,73576612,73581816,73585179,73587839,73593450,73598639,73611730,73620287	73576310,73576507,73576731,73581868,73585364,73587934,73593593,73598718,73611829,73620412	0.682540
liver_male_adult_32_years	chr11	287295	287315	287295	+	High_confidence	6	6	12	0.490997	3.584963	chr11	287048	287379	LINE|L2|L2a	-	chr11	287304	288298	AC136475.3|ENST00000533924.1	+	287304,288019	287334,288298	0.666667
liver_male_adult_32_years	chr17	43466100	43466105	43466104	-	High_confidence	47	50	126	5.155473	5.156999	chr17	43465877	43466167	SINE|Alu|AluSz	-	chr17	43423750	43466103	STRG.115696.1	-	43423750,43433515,43442197,43452115,43452385,43454728	43427736,43441628,43452078,43452209,43453929,43466103	1.000000
liver_male_adult_32_years	chr3	189121289	189121302	189121301	+	RAMPAGE_only	3	3	6	0.245499	2.584963	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.833333
liver_male_adult_32_years	chr13	102192294	102192295	102192294	-	RAMPAGE_only	12	13	16	0.654663	3.702820	chr13	102191630	102193086	LTR|ERVL-MaLR|MLT1A-int	-	chr13	102189048	102297192	STRG.99517.2	-	102189048,102234427,102272787,102294454	102234389,102272741,102294192,102297192	0.812500
liver_male_adult_32_years	chr3	134597819	134597824	134597819	+	High_confidence	2	2	6	0.245499	2.584963	chr3	134597473	134597869	LTR|ERVL|ERV3-16A3_LTR	+	chr3	134597878	134779899	EPHB1|ENST00000467708.2	+	134597878,134615183,134755658,134779737	134597984,134615438,134755704,134779899	0.500000
liver_male_adult_32_years	chr11	58939473	58939504	58939483	+	High_confidence	323	328	863	35.310898	7.268796	chr11	58939456	58939812	LTR|ERV1|LOR1-int	+	chr11	58939483	58955313	STRG.85773.3	+	58939483,58942539,58943542,58947045,58947857,58954769,58955175	58940401,58942584,58943666,58947165,58947965,58954896,58955313	0.908459
liver_male_adult_32_years	chr1	78473312	78473345	78473312	+	RAMPAGE_only	7	7	26	1.063828	4.022055	chr1	78473085	78473339	DNA|hAT-Tip100|MER45B	-	chr1	78491042	78540701	PTGFR|NM_000959.3	+	78491042,78492671,78536405	78491236,78493541,78540701	0.769231
liver_male_adult_32_years	chr5	68135153	68135175	68135170	+	High_confidence	9	13	49	2.004906	5.175735	chr5	68134692	68135198	LINE|RTE-X|L4_B_Mam	+	chr5	68134656	68135791	STRG.43925.1	+	68134656	68135791	0.979592
liver_male_adult_32_years	chr4	103425074	103425076	103425074	+	RAMPAGE_only	328	376	473	19.353482	5.801146	chr4	103424943	103425102	LTR|Gypsy|LTR81B	+	chr4	103256158	103453658	LINC02428|ENST00000513793.5	+	103256158,103425054,103436934,103453599	103256294,103425185,103437046,103453658	0.835095
liver_male_adult_32_years	chr11	61529391	61529436	61529432	-	RAMPAGE_only	9	9	48	1.963990	4.686641	chr11	61529333	61529542	SINE|MIR|MIRb	-	chr11	61515312	61531269	STRG.86055.12	-	61515312,61523074,61523826,61524362,61529361	61518731,61523274,61523941,61528185,61531269	1.000000
liver_male_adult_32_years	chr2	34677859	34677868	34677859	+	High_confidence	6	7	12	0.490997	3.418296	chr2	34677662	34678040	LTR|ERV1|Harlequin-int	+	chr2	34677862	34722533	LINC01320|ENST00000604250.3	+	34677862,34710451,34713578,34721998	34677927,34710513,34713773,34722533	0.500000
liver_male_adult_32_years	chr13	36359722	36359756	36359732	-	High_confidence	12	12	55	2.250405	4.224530	chr13	36359679	36359903	SINE|MIR|MIR	+	chr13	36335232	36359737	STRG.97317.9	-	36335232,36359569	36335832,36359737	0.909091
liver_male_adult_32_years	chr6	109250805	109250864	109250863	+	RAMPAGE_only	7	8	38	1.554825	3.639029	chr6	109245218	109251251	LINE|L1|L1PA2	-	chr6	109236613	109270514	LOC100996634|NM_001277339.1	+	109236613,109239327,109242178,109254447,109255370,109257545,109261888,109264800,109267807,109270038	109236780,109239520,109242306,109254648,109255492,109257774,109262091,109264956,109267901,109270514	0.842105
liver_male_adult_32_years	chr11	1673129	1673154	1673153	+	RAMPAGE_only	8	8	17	0.695580	3.286896	chr11	1672484	1674391	LINE|L1|L1MB8	-	chr11	1670862	1686711	STRG.83465.1	+	1670862,1685876	1683543,1686711	1.000000
liver_male_adult_32_years	chr4	3111665	3111696	3111695	+	RAMPAGE_only	4	4	18	0.736496	3.392147	chr4	3111496	3112202	LINE|L1|HAL1	-	chr4	3115328	3121712	HTT|ENST00000506137.1	+	3115328,3116084,3121227	3115445,3116263,3121712	1.000000
liver_male_adult_32_years	chr7	66456558	66456583	66456558	-	RAMPAGE_only	4	4	16	0.654663	3.750000	chr7	66456382	66456797	LTR|ERVL|LTR40b	+	chr7	66409142	66458414	STRG.60882.5	-	66409142,66411614,66427948,66429678,66429883,66450070,66455658,66455946	66409244,66411702,66428040,66429757,66430017,66450236,66455853,66458414	0.875000
liver_male_adult_32_years	chr3	52186855	52186894	52186855	-	High_confidence	6	6	29	1.186577	4.532665	chr3	52186612	52186938	LINE|L2|L2b	+	chr3	52183609	52186999	STRG.26814.1	-	52183609	52186999	0.931034
liver_male_adult_32_years	chr10	102449836	102449845	102449836	+	High_confidence	3	3	10	0.409165	3.121928	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.900000
liver_male_adult_32_years	chr11	94796194	94796209	94796208	+	RAMPAGE_only	8	10	41	1.677575	4.881704	chr11	94796179	94796260	SINE|MIR|MIRb	-	chr11	94768370	94876753	AMOTL1|ENST00000433060.2	+	94768370,94795010,94799389,94821529,94830049,94831451,94850113,94853932,94859524,94864734,94865941,94869197,94870688	94768560,94795160,94800311,94821821,94830194,94831541,94850259,94854082,94859715,94864860,94866168,94869473,94876753	0.829268
liver_male_adult_32_years	chr5	70401416	70401505	70401416	+	High_confidence	7	7	44	1.800324	4.489877	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70401208	70447526	STRG.44153.23	+	70401208,70406841,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70401668,70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.954545
liver_male_adult_32_years	chr1	184568375	184568409	184568408	+	High_confidence	144	144	487	19.926312	5.492924	chr1	184568204	184568449	LINE|L1|L1MB3	-	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.946612
liver_male_adult_32_years	chrX	106902363	106902376	106902375	-	High_confidence	5	6	12	0.490997	3.251629	chrX	106902293	106902548	LINE|L2|L2c	+	chrX	106899609	106902525	STRG.135917.1	-	106899609,106901473,106902139	106900908,106901538,106902525	0.916667
liver_male_adult_32_years	chr7	27617580	27617606	27617605	+	RAMPAGE_only	4	4	13	0.531914	3.022055	chr7	27617476	27617882	LINE|L1|L1M2	+	chr7	27615973	27627492	TSL|NR_122123.1	+	27615973,27627222	27616795,27627492	0.846154
liver_male_adult_32_years	chr7	11192977	11192999	11192977	+	High_confidence	10	10	22	0.900162	3.823068	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.681818
liver_male_adult_32_years	chr6	51738767	51738789	51738788	-	High_confidence	5	7	12	0.490997	3.022055	chr6	51738733	51738922	LINE|L2|L2a	+	chr6	51705008	51739182	STRG.52791.1	-	51705008,51715017	51714965,51739182	0.750000
liver_male_adult_32_years	chr5	180909572	180909573	180909572	+	High_confidence	11	11	16	0.654663	3.506891	chr5	180909597	180909731	SINE|Alu|FLAM_C	+	chr5	180909572	180948353	BTNL8|ENST00000514448.5	+	180909572,180911338,180947511	180909697,180911614,180948353	0.875000
liver_male_adult_32_years	chr20	50306127	50306145	50306134	+	RAMPAGE_only	5	5	22	0.900162	4.201841	chr20	50305982	50306635	LINE|L2|L2a	-	chr20	50303647	50314922	STRG.126929.2	+	50303647,50311613,50311804	50308951,50311706,50314922	0.954545
liver_male_adult_32_years	chr8	143039256	143039267	143039266	+	High_confidence	8	8	15	0.613747	3.521641	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.800000
liver_male_adult_32_years	chr19	40940533	40940617	40940533	+	RAMPAGE_only	8	8	49	2.004906	5.076658	chr19	40940522	40940675	DNA|hAT-Charlie|MER5A	-	chr19	40935903	40949234	STRG.123240.3	+	40935903,40936391,40938968,40942064,40944330,40944710,40949052	40936259,40936541,40941472,40942206,40944518,40944852,40949234	0.938776
liver_male_adult_32_years	chr1	113759857	113759885	113759857	-	High_confidence	4	7	17	0.695580	3.202820	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.588235
liver_male_adult_32_years	chr15	99620943	99620978	99620977	+	RAMPAGE_only	3	4	16	0.654663	3.773557	chr15	99620843	99621144	SINE|Alu|AluSx1	-	chr15	99632977	99716488	MEF2A|NM_001130928.2	+	99632977,99671322,99674392,99675398,99690240,99706728,99710633,99712389	99633173,99671454,99674612,99675458,99690428,99706855,99710760,99716488	0.875000
liver_male_adult_32_years	chr10	93235745	93235773	93235745	-	High_confidence	2	2	9	0.368248	2.500000	chr10	93235283	93235749	LTR|ERVL|MLT2A1	-	chr10	93177932	93235879	STRG.81563.1	-	93177932,93211646,93235393	93211527,93211807,93235879	0.666667
liver_male_adult_32_years	chr9	125201248	125201278	125201248	+	High_confidence	7	9	32	1.309326	4.538910	chr9	125200941	125201383	LINE|L2|L2b	-	chr9	125200604	125220658	RABEPK|ENST00000416065.1	+	125200604,125207563,125213369,125220538	125200906,125207721,125213522,125220658	0.656250
liver_male_adult_32_years	chr1	212792425	212792445	212792444	-	High_confidence	5	5	15	0.613747	3.235926	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.800000
liver_male_adult_32_years	chr17	48199418	48199425	48199418	-	RAMPAGE_only	6	6	12	0.490997	3.277613	chr17	48199174	48199607	LINE|L2|L2c	+	chr17	48180091	48185179	SKAP1|ENST00000579336.1	-	48180091,48182393,48184722	48180248,48182457,48185179	0.833333
liver_male_adult_32_years	chr9	116567223	116567272	116567223	+	High_confidence	15	19	80	3.273316	5.060748	chr9	116567106	116567317	DNA|hAT-Blackjack|MER63A	-	chr9	116567234	116573157	STRG.76389.1	+	116567234	116573157	0.975000
liver_male_adult_32_years	chr13	49495602	49495633	49495602	+	High_confidence	4	5	20	0.818329	3.721928	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495609	49528992	PHF11|NM_001040443.2	+	49495609,49506634,49513058,49518017,49520893,49522042,49523174,49524084,49526386,49528510	49496095,49506756,49513166,49518151,49520940,49522107,49523241,49524216,49526458,49528992	1.000000
liver_male_adult_32_years	chr9	104906000	104906011	104906000	-	RAMPAGE_only	16	17	25	1.022911	3.464235	chr9	104905864	104906087	SINE|MIR|MIRb	+	chr9	104861437	104928139	ABCA1|ENST00000374733.1	-	104861437,104883038,104884426,104889101,104927934	104861800,104883157,104884568,104889195,104928139	0.920000
liver_male_adult_32_years	chr2	102799631	102799637	102799631	+	RAMPAGE_only	5	5	14	0.572830	3.235926	chr2	102799382	102800007	LTR|ERV1|MER39B	-	chr2	102797765	102816316	TMEM182|ENST00000484094.1	+	102797765,102814747	102798000,102816316	0.928571
liver_male_adult_32_years	chr12	122064308	122064376	122064308	+	RAMPAGE_only	3	3	14	0.572830	3.392747	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063226	122065821	STRG.96147.2	+	122063226	122065821	0.785714
liver_male_adult_32_years	chr5	173642485	173642534	173642505	+	High_confidence	3	3	18	0.736496	3.016876	chr5	173642505	173642642	LTR|ERVL-MaLR|MLT1K	+	chr5	173642518	173658194	LINC01863|ENST00000523242.1	+	173642518,173657839	173642657,173658194	0.833333
liver_male_adult_32_years	chr10	5968894	5968924	5968911	-	High_confidence	5	5	28	1.145661	4.392747	chr10	5968507	5969013	LINE|L1|L1MCc	-	chr10	5959753	5969230	STRG.77933.14	-	5959753,5960366,5966144,5968593	5959786,5960567,5966339,5969230	0.571429
liver_male_adult_32_years	chr5	115739043	115739064	115739043	+	High_confidence	54	75	177	7.242212	6.242847	chr5	115738242	115739340	LTR|ERV1|MER57A-int	-	chr5	115739029	115763830	STRG.46488.3	+	115739029	115763830	0.966102
liver_male_adult_32_years	chr11	69353011	69353052	69353027	-	High_confidence	6	6	38	1.554825	4.947703	chr11	69352803	69353053	SINE|MIR|MIR	+	chr11	69350803	69353396	STRG.86380.1	-	69350803	69353396	0.552632
liver_male_adult_32_years	chr9	108885838	108885872	108885871	-	RAMPAGE_only	17	17	32	1.309326	4.152518	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108867516	108893083	ELP1|ENST00000495759.5	-	108867516,108874894,108875632,108877994,108878622,108879445,108880051,108881704,108882124,108889331,108891202,108892985	108869182,108874970,108875735,108878149,108878750,108879557,108880165,108881765,108882187,108889393,108891404,108893083	0.906250
liver_male_adult_32_years	chr3	52186766	52186785	52186784	-	High_confidence	2	2	7	0.286415	2.584963	chr3	52186612	52186938	LINE|L2|L2b	+	chr3	52183609	52186999	STRG.26814.1	-	52183609	52186999	0.857143
liver_male_adult_32_years	chr22	27933210	27933211	27933210	-	High_confidence	6	7	9	0.368248	2.750000	chr22	27933098	27933548	LTR|ERV1|LTR71A	-	chr22	27932099	27932866	STRG.130274.1	-	27932099	27932866	0.777778
liver_male_adult_32_years	chr10	32982550	32982551	32982550	+	High_confidence	18	20	27	1.104744	4.532665	chr10	32982518	32982768	SINE|Alu|AluSz6	-	chr10	32982540	33082102	ITGB1-DT|ENST00000414157.1	+	32982540,32985622,33081341	32982685,32985757,33082102	0.518519
liver_male_adult_32_years	chr16	72014320	72014321	72014320	+	High_confidence	11	11	11	0.450081	2.663533	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.727273
liver_male_adult_32_years	chr5	65722895	65722916	65722915	-	High_confidence	8	8	26	1.063828	4.469670	chr5	65722781	65722883	DNA|hAT-Ac|OldhAT1	-	chr5	65680687	65723035	SGTB|ENST00000506816.1	-	65680687,65685367,65704278,65708488,65712960,65720707,65722756	65680794,65685472,65704378,65708558,65713064,65720829,65723035	0.923077
liver_male_adult_32_years	chr11	114295131	114295151	114295131	+	High_confidence	3	3	8	0.327332	2.521641	chr11	114294850	114295386	LTR|ERV1|LTR35A	-	chr11	114295812	114312516	NNMT|NM_006169.2	+	114295812,114297950,114312044	114296710,114298158,114312516	0.875000
liver_male_adult_32_years	chr6	2881285	2881286	2881285	-	High_confidence	18	19	19	0.777413	2.967065	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.947368
liver_male_adult_32_years	chr17	50271485	50271488	50271485	+	High_confidence	31	31	51	2.086739	3.935105	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	0.980392
liver_male_adult_32_years	chr4	186260189	186260253	186260194	+	RAMPAGE_only	29	30	159	6.505716	6.536323	chr4	186259848	186260334	DNA|hAT-Charlie|MER1A	-	chr4	186265944	186288780	F11|ENST00000403665.6	+	186265944,186267135,186271608,186273070,186274115,186275786,186276230,186280011,186280222,186280473,186284091,186285637,186286414,186287683,186288452	186266295,186267191,186271771,186273177,186274275,186275896,186276390,186280121,186280385,186280580,186284260,186285813,186286510,186287823,186288780	0.786164
liver_male_adult_32_years	chr20	31573344	31573381	31573373	+	RAMPAGE_only	6	6	23	0.941078	4.061482	chr20	31573375	31573489	SINE|MIR|MIR	+	chr20	31559615	31577923	HM13|ENST00000619859.1	+	31559615,31561633,31577603	31559647,31561736,31577923	0.521739
liver_male_adult_32_years	chr22	24011756	24011757	24011756	+	High_confidence	19	19	20	0.818329	3.932138	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.950000
liver_male_adult_32_years	chr13	24221308	24221309	24221308	+	RAMPAGE_only	4	4	6	0.245499	2.584963	chr13	24221178	24221359	SINE|MIR|MIRb	+	chr13	24160747	24278769	STRG.96846.6	+	24160747,24191255,24201055,24249476,24251717,24278613	24187508,24201031,24224582,24249842,24251862,24278769	1.000000
liver_male_adult_32_years	chr1	121511787	121511843	121511787	+	High_confidence	10	10	49	2.004906	5.094102	chr1	121510491	121511971	LTR|ERV1|HERV9N-int	+	chr1	121511791	121512695	STRG.6640.1	+	121511791	121512695	0.979592
lower_leg_skin_female_adult_51_years	chr1	211548062	211548114	211548079	-	High_confidence	3	4	19	1.564128	3.794653	chr1	211547417	211548345	LINE|L2|L2a	+	chr1	211531483	211548067	STRG.7490.1	-	211531483,211546931,211547967	211531908,211547057,211548067	0.578947
lower_leg_skin_female_adult_51_years	chr19	14491713	14491734	14491713	-	RAMPAGE_only	5	5	13	1.070193	3.251629	chr19	14491587	14491827	LINE|L2|L2	+	chr19	14477761	14496132	GIPC1|ENST00000393033.8	-	14477761,14478683,14479411,14480304,14480592,14482688,14491655,14492856,14496036	14478567,14478765,14479524,14480485,14480778,14483006,14491743,14492912,14496132	0.692308
lower_leg_skin_female_adult_51_years	chr3	190307135	190307226	190307193	-	RAMPAGE_only	9	11	72	5.927224	5.196413	chr3	190307074	190307239	SINE|MIR|MIRb	-	chr3	190305700	190322446	CLDN1|NM_021101.4	-	190305700,190310168,190312871,190321983	190308439,190310253,190313036,190322446	0.958333
lower_leg_skin_female_adult_51_years	chr18	9588180	9588181	9588180	-	RAMPAGE_only	4	4	7	0.576258	2.584963	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9577063	9595061	PPP4R1|ENST00000580583.5	-	9577063,9584514,9584720,9588088,9588710,9593767,9595017	9577191,9584580,9584828,9588235,9588853,9593874,9595061	0.714286
lower_leg_skin_female_adult_51_years	chr2	40717125	40717162	40717161	+	High_confidence	6	8	30	2.469676	4.378783	chr2	40716955	40717505	LTR|ERVL|MLT2B3	+	chr2	40717142	40732488	STRG.9920.1	+	40717142,40717627,40732197	40717420,40717840,40732488	0.566667
lower_leg_skin_female_adult_51_years	chr19	58306086	58306143	58306086	+	High_confidence	3	3	21	1.728774	2.723220	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.809524
lower_leg_skin_female_adult_51_years	chr11	47172312	47172314	47172312	-	High_confidence	4	7	8	0.658580	2.807355	chr11	47172030	47172274	SINE|MIR|MIRb	-	chr11	47166267	47171557	ARFGAP2|ENST00000527776.5	-	47166267,47166505,47166759,47167908,47168122,47171452	47166386,47166599,47166886,47168043,47168251,47171557	0.750000
lower_leg_skin_female_adult_51_years	chr19	5680205	5680206	5680205	-	High_confidence	6	8	8	0.658580	2.500000	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
lower_leg_skin_female_adult_51_years	chr7	64917041	64917086	64917066	+	RAMPAGE_only	3	3	10	0.823225	2.725481	chr7	64917079	64917228	DNA|hAT-Charlie|MER5A1	+	chr7	64903287	64930966	ZNF273|ENST00000395375.3	+	64903287,64917029,64917580,64918196,64927653	64903419,64917118,64917707,64918292,64930966	0.900000
lower_leg_skin_female_adult_51_years	chr7	154928503	154928504	154928503	+	High_confidence	4	4	6	0.493935	2.584963	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	1.000000
lower_leg_skin_female_adult_51_years	chr14	50159437	50159443	50159437	-	RAMPAGE_only	4	5	10	0.823225	3.169925	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.900000
lower_leg_skin_female_adult_51_years	chr19	58312241	58312243	58312242	+	RAMPAGE_only	5	7	11	0.905548	3.027169	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.636364
lower_leg_skin_female_adult_51_years	chr6	36800367	36800374	36800367	-	RAMPAGE_only	5	5	10	0.823225	3.121928	chr6	36800265	36800489	LINE|L2|L2c	+	chr6	36797384	36839444	CPNE5|NM_001314017.1	-	36797384,36798164,36798454,36799966,36822113,36823057,36839282	36797666,36798241,36798494,36800070,36822160,36823098,36839444	0.700000
lower_leg_skin_female_adult_51_years	chr1	153967486	153967512	153967497	+	High_confidence	7	8	24	1.975741	3.132258	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.833333
lower_leg_skin_female_adult_51_years	chr6	31400605	31400618	31400617	-	High_confidence	7	8	16	1.317161	3.106891	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31399861	31400605	STRG.34926.1	-	31399861	31400605	0.875000
lower_leg_skin_female_adult_51_years	chr12	9407494	9407507	9407506	-	High_confidence	11	12	19	1.564128	3.616349	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9406212	9407500	STRG.63329.1	-	9406212,9407307	9406398,9407500	0.842105
lower_leg_skin_female_adult_51_years	chr14	82642614	82642622	82642621	+	High_confidence	5	8	14	1.152516	3.521641	chr14	82642501	82642782	LTR|ERV1|MER61B	+	chr14	82642619	82651657	LINC02301|ENST00000555798.1	+	82642619,82650923	82642674,82651657	0.500000
lower_leg_skin_female_adult_51_years	chr22	30971746	30971763	30971746	+	High_confidence	4	4	9	0.740903	2.500000	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.666667
lower_leg_skin_female_adult_51_years	chr2	73982163	73982169	73982163	-	High_confidence	11	12	23	1.893419	3.226731	chr2	73982060	73982404	LINE|L2|L2c	-	chr2	73957966	73981439	DGUOK-AS1|NR_104030.1	-	73957966,73981134	73958207,73981439	0.826087
lower_leg_skin_female_adult_51_years	chr5	95509593	95509600	95509599	-	RAMPAGE_only	6	6	13	1.070193	3.251629	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	0.692308
lower_leg_skin_female_adult_51_years	chrX	73837439	73837451	73837450	-	RAMPAGE_only	8	8	19	1.564128	3.260828	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.947368
lower_leg_skin_female_adult_51_years	chr20	44532569	44532570	44532569	+	High_confidence	6	6	6	0.493935	2.584963	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531915	44624247	PKIG|ENST00000372887.5	+	44531915,44582584,44589796,44614533,44623932	44531978,44582731,44589866,44614707,44624247	0.500000
lower_leg_skin_female_adult_51_years	chr19	11033783	11033806	11033805	+	High_confidence	6	8	11	0.905548	3.277613	chr19	11033706	11034051	SINE|tRNA|LFSINE_Vert	-	chr19	11034122	11066122	SMARCA4|ENST00000586985.2	+	11034122,11034913,11041306,11058254,11058787,11059752,11060044,11065192	11034200,11035132,11041560,11058363,11058889,11059885,11060187,11066122	0.909091
lower_leg_skin_female_adult_51_years	chr8	133254802	133254847	133254834	-	High_confidence	5	5	28	2.305031	4.450212	chr8	133254749	133254865	LINE|L2|L2b	+	chr8	133246626	133254882	NDRG1|ENST00000521664.1	-	133246626,133247874,133248714,133250439,133254538	133246663,133247926,133248771,133250543,133254882	0.714286
lower_leg_skin_female_adult_51_years	chr20	31779634	31779662	31779651	+	RAMPAGE_only	8	8	29	2.387354	3.926272	chr20	31779639	31780006	LINE|L2|L2b	-	chr20	31739270	31801805	TPX2|ENST00000340513.4	+	31739270,31742540,31757406,31760056,31766555,31770342,31771559,31775866,31777486,31778812,31780938,31782248,31783704,31792734,31793847,31794401,31797403,31798364,31800969	31739621,31742647,31757582,31760179,31766682,31770471,31771682,31775988,31777638,31778984,31781046,31782390,31783921,31792830,31794024,31794548,31797515,31798552,31801805	0.931034
lower_leg_skin_female_adult_51_years	chr5	133089611	133089678	133089677	+	RAMPAGE_only	8	12	50	4.116127	4.797995	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.920000
lower_leg_skin_female_adult_51_years	chr3	161282573	161282623	161282622	-	High_confidence	7	7	30	2.469676	4.008622	chr3	161282195	161282741	LTR|ERVL|MLT2A2	-	chr3	161282207	161282623	STRG.22871.1	-	161282207	161282623	0.700000
lower_leg_skin_female_adult_51_years	chr19	9617054	9617066	9617060	-	RAMPAGE_only	2	2	7	0.576258	2.584963	chr19	9616898	9617025	SINE|Alu|FLAM_C	-	chr19	9610936	9621195	ZNF561|ENST00000495503.5	-	9610936,9614020,9617048,9618090,9619431,9621161	9611336,9614103,9617171,9618179,9619582,9621195	0.571429
lower_leg_skin_female_adult_51_years	chr7	128641006	128641014	128641013	+	High_confidence	5	5	11	0.905548	2.721928	chr7	128640990	128641042	LTR|ERVL|LTR41	+	chr7	128641240	128660998	LINC01000|NR_024368.1	+	128641240,128642216,128648791,128651037,128651188	128641379,128642281,128648982,128651095,128660998	0.545455
lower_leg_skin_female_adult_51_years	chr15	58912568	58912601	58912600	-	RAMPAGE_only	4	4	14	1.152516	3.378783	chr15	58912585	58912641	SINE|MIR|MIRc	+	chr15	58894157	58933579	SLTM|ENST00000249736.11	-	58894157,58894432,58897114,58898802,58899468,58901259,58912562,58913498,58916934,58932355,58933403	58894193,58894582,58897233,58898852,58899883,58901287,58912610,58913696,58916999,58932443,58933579	0.857143
lower_leg_skin_female_adult_51_years	chr5	119420424	119420450	119420424	+	RAMPAGE_only	8	8	37	3.045934	4.286147	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.783784
lower_leg_skin_female_adult_51_years	chr6	17994506	17994520	17994506	-	RAMPAGE_only	25	26	45	3.704515	5.041011	chr6	17994273	17994502	SINE|MIR|MIR	-	chr6	17759182	17987623	KIF13A|NM_001105568.2	-	17759182,17764154,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571,17796668,17799265,17799951,17804360,17805474,17808767,17817019,17825767,17826037,17828239,17831100,17833960,17836877,17837471,17849376,17850322,17851954,17855436,17856029,17873376,17898167,17987053,17987408	17760877,17764946,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794704,17796820,17799439,17800113,17804510,17805615,17808930,17817233,17825934,17826124,17828370,17831235,17834071,17837090,17837583,17849489,17850457,17852042,17855617,17856122,17873437,17898180,17987144,17987623	0.644444
lower_leg_skin_female_adult_51_years	chr11	62536724	62536746	62536724	-	RAMPAGE_only	2	2	8	0.658580	2.500000	chr11	62536719	62536865	SINE|MIR|MIRb	+	chr11	62534045	62545663	AHNAK|ENST00000528508.5	-	62534045,62535002,62535944,62536468,62545565	62534074,62535190,62536098,62536567,62545663	0.500000
lower_leg_skin_female_adult_51_years	chr4	2991534	2991585	2991534	+	RAMPAGE_only	2	2	12	0.987871	3.418296	chr4	2991511	2991811	SINE|Alu|AluSx	-	chr4	2963820	3040747	GRK4|ENST00000504933.1	+	2963820,2984512,2988726,2992214,3004230,3007735,3009647,3013687,3019640,3022413,3027911,3029200,3035385,3037373,3040571	2964122,2984608,2988839,2992292,3004334,3007828,3009711,3013828,3019831,3022451,3028001,3029409,3035523,3037511,3040747	0.833333
lower_leg_skin_female_adult_51_years	chr1	116432484	116432508	116432507	-	High_confidence	7	7	16	1.317161	3.640224	chr1	116432401	116432910	LINE|L2|L2a	+	chr1	116428383	116432483	STRG.4837.1	-	116428383,116432291	116428494,116432483	0.562500
lower_leg_skin_female_adult_51_years	chr11	7905694	7905749	7905748	-	High_confidence	15	15	94	7.738320	6.033104	chr11	7901509	7905722	LTR|ERVK|HERVK3-int	-	chr11	7696504	7905955	STRG.58621.14	-	7696504,7696708,7700295,7701323,7701715,7702156,7703697,7704564,7879006,7879594,7881088,7881955,7882859,7905602	7696589,7698773,7700485,7701475,7701811,7702329,7703789,7704674,7879083,7879759,7881149,7882073,7882933,7905955	0.585106
lower_leg_skin_female_adult_51_years	chr19	5680234	5680249	5680234	-	High_confidence	2	2	7	0.576258	2.584963	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.714286
lower_leg_skin_female_adult_51_years	chr14	77736976	77737045	77736976	-	High_confidence	4	4	27	2.222709	4.282484	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.925926
lower_leg_skin_female_adult_51_years	chr19	52616962	52616963	52616962	-	RAMPAGE_only	8	8	11	0.905548	2.721928	chr19	52616863	52617165	LINE|L1|L1PA8	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	0.909091
lower_leg_skin_female_adult_51_years	chr11	35207953	35207976	35207968	+	RAMPAGE_only	4	4	10	0.823225	3.321928	chr11	35207888	35207973	DNA|TcMar-Tigger|MamRep137	+	chr11	35201678	35211401	CD44|ENST00000528672.1	+	35201678,35204511,35208104,35209964,35211245	35201787,35204640,35208206,35210054,35211401	0.600000
lower_leg_skin_female_adult_51_years	chr8	124673341	124673361	124673341	-	High_confidence	8	8	33	2.716644	3.952820	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.848485
lower_leg_skin_female_adult_51_years	chr22	23459135	23459149	23459148	+	High_confidence	5	5	11	0.905548	2.845351	chr22	23459033	23459600	LINE|L1|L1M4	-	chr22	23458378	23460833	AP000344.1|ENST00000457193.1	+	23458378,23460352	23458483,23460833	0.727273
lower_leg_skin_female_adult_51_years	chr6	24778402	24778429	24778402	+	RAMPAGE_only	2	3	11	0.905548	2.921928	chr6	24778219	24778509	SINE|Alu|AluJo	+	chr6	24775412	24785707	GMNN|ENST00000378054.6	+	24775412,24777221,24780662,24781476,24784086,24784443,24785637	24775502,24777297,24780740,24781621,24784169,24784554,24785707	0.909091
lower_leg_skin_female_adult_51_years	chr7	7566051	7566055	7566051	-	High_confidence	6	6	15	1.234838	3.521641	chr7	7565778	7566082	SINE|Alu|AluSc	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.533333
lower_leg_skin_female_adult_51_years	chr7	132590534	132590558	132590534	-	High_confidence	2	2	10	0.823225	2.947703	chr7	132590316	132590835	LTR|ERVL|MLT2A2	-	chr7	132164267	132590597	STRG.43488.1	-	132164267,132165133,132168303,132174777,132179686,132180585,132181380,132182096,132185298,132187470,132194061,132198484,132202645,132203322,132210942,132223526,132226160,132227450,132228345,132241065,132298090,132489291,132507505,132545218,132590402	132164288,132165200,132168572,132174920,132179921,132180732,132181620,132182190,132185463,132187607,132194179,132198636,132202836,132203419,132211143,132223641,132226260,132227604,132228469,132241166,132298222,132489474,132508779,132545308,132590597	0.800000
lower_leg_skin_female_adult_51_years	chrX	107155937	107155974	107155937	-	High_confidence	5	5	20	1.646451	3.984184	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107123242	107155820	STRG.98074.1	-	107123242,107147742,107150855,107153171,107153453,107155759	107124332,107147809,107150967,107153306,107153503,107155820	0.850000
lower_leg_skin_female_adult_51_years	chr20	62603172	62603201	62603172	-	High_confidence	23	24	78	6.421159	5.797077	chr20	62602934	62603232	LINE|L1|L1MEf	-	chr20	62596731	62603115	BX640514.2|ENST00000617730.1	-	62596731,62602977	62597218,62603115	0.512821
lower_leg_skin_female_adult_51_years	chr1	39310144	39310147	39310146	+	RAMPAGE_only	4	8	10	0.823225	3.121928	chr1	39310032	39310179	LINE|L1|L1ME3A	+	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.500000
lower_leg_skin_female_adult_51_years	chr14	50756877	50756943	50756942	-	RAMPAGE_only	4	4	12	0.987871	3.022055	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
lower_leg_skin_female_adult_51_years	chr17	28234030	28234054	28234047	-	High_confidence	17	25	70	5.762578	5.412841	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28231414	28234049	STRG.80987.1	-	28231414,28233917	28233342,28234049	0.857143
lower_leg_skin_female_adult_51_years	chr12	68840758	68840793	68840774	+	RAMPAGE_only	9	9	23	1.893419	3.055108	chr12	68840533	68840806	SINE|Alu|AluSz	-	chr12	68836128	68844190	STRG.65932.4	+	68836128,68839273,68840746,68843740	68836749,68840549,68843264,68844190	1.000000
lower_leg_skin_female_adult_51_years	chr16	63617757	63617758	63617757	-	High_confidence	18	19	21	1.728774	3.748995	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63305251	63617853	STRG.78714.1	-	63305251,63334599,63531224,63617692	63305420,63334667,63531304,63617853	0.523810
lower_leg_skin_female_adult_51_years	chr10	86974613	86974722	86974721	-	High_confidence	15	19	56	4.610063	5.030395	chr10	86974596	86974877	LINE|L1|L1M7	-	chr10	86973386	86974698	STRG.56323.1	-	86973386,86974443	86973934,86974698	0.785714
lower_leg_skin_female_adult_51_years	chr4	142474407	142474408	142474407	-	High_confidence	27	27	30	2.469676	4.185230	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.900000
lower_leg_skin_female_adult_51_years	chr5	34918378	34918391	34918390	+	RAMPAGE_only	3	3	8	0.658580	2.521641	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	0.875000
lower_leg_skin_female_adult_51_years	chr2	29114123	29114174	29114170	+	High_confidence	11	11	35	2.881289	4.513646	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.942857
lower_leg_skin_female_adult_51_years	chr12	8788252	8788253	8788252	+	High_confidence	7	8	10	0.823225	3.121928	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.800000
lower_leg_skin_female_adult_51_years	chrX	19647778	19647791	19647784	-	High_confidence	102	112	267	21.980121	6.684457	chrX	19647773	19647939	DNA|hAT-Charlie|MER5A	+	chrX	19588683	19647808	STRG.95928.3	-	19588683,19592066,19594948,19607937,19631863,19645399,19647477	19588802,19592147,19595000,19608045,19631958,19645475,19647808	0.962547
lower_leg_skin_female_adult_51_years	chr9	127451104	127451128	127451127	-	High_confidence	4	4	15	1.234838	3.467720	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.733333
lower_leg_skin_female_adult_51_years	chr3	69237149	69237186	69237182	-	RAMPAGE_only	11	11	42	3.457547	4.603056	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69169989	69386073	FRMD4B|ENST00000398540.7	-	69169989,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69195230,69196254,69196899,69198697,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69385827	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195141,69195364,69196396,69197038,69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69386073	0.761905
lower_leg_skin_female_adult_51_years	chr10	47743708	47743733	47743708	+	High_confidence	2	2	18	1.481806	4.058814	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.555556
lower_leg_skin_female_adult_51_years	chr18	63587246	63587257	63587246	+	High_confidence	5	5	9	0.740903	3.000000	chr18	63587176	63587346	DNA|hAT-Charlie|MER5B	-	chr18	63587299	63599198	SERPINB13|ENST00000269489.9	+	63587299,63588650,63589655,63592347,63592853,63594354,63595028,63596958	63587450,63588832,63589742,63592476,63592971,63594497,63595184,63599198	0.777778
lower_leg_skin_female_adult_51_years	chr18	61652303	61652305	61652303	+	High_confidence	138	158	210	17.287735	5.807355	chr18	61652260	61652563	SINE|Alu|AluJr	-	chr18	61652288	61662460	STRG.85418.1	+	61652288,61661979,61662224	61652403,61662076,61662460	0.738095
lower_leg_skin_female_adult_51_years	chr19	55069739	55069781	55069773	-	High_confidence	14	22	83	6.832772	5.154748	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55063900	55069531	RDH13|ENST00000587373.1	-	55063900,55069321	55064412,55069531	0.542169
lower_leg_skin_female_adult_51_years	chr12	16353884	16353885	16353884	+	High_confidence	10	10	11	0.905548	3.121928	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.545455
lower_leg_skin_female_adult_51_years	chr12	12635913	12635914	12635913	+	RAMPAGE_only	4	4	6	0.493935	2.584963	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	1.000000
lower_leg_skin_female_adult_51_years	chr2	215018023	215018081	215018048	-	RAMPAGE_only	3	3	12	0.987871	3.277613	chr2	215017968	215018048	DNA|hAT-Charlie|MER5A	+	chr2	214931541	215032086	ABCA12|NM_015657.3	-	214931541,214934077,214937509,214942924,214945000,214947421,214948595,214949039,214950878,214953853,214955201,214956662,214958276,214959023,214966847,214968719,214970272,214973948,214974777,214975784,214978315,214978803,214980482,214982186,214983646,214986541,214987646,214989328,214989551,214990701,214997694,215000704,215001557,215004208,215007726,215010330,215011438,215011970,215015489,215018007,215019335,215019539,215025672,215026819,215031820	214932741,214934215,214937615,214943017,214945104,214947556,214948737,214949149,214951083,214954107,214955361,214956778,214958454,214959078,214966953,214968807,214970400,214974042,214974864,214976037,214978466,214979040,214980643,214982383,214983865,214986728,214987793,214989463,214989621,214991031,214997809,215001020,215001737,215004299,215007846,215010470,215011649,215012135,215015663,215018132,215019448,215019796,215025779,215026938,215032086	0.916667
lower_leg_skin_female_adult_51_years	chr8	8177023	8177042	8177023	+	High_confidence	3	3	12	0.987871	2.918296	chr8	8172260	8180087	LTR|ERV1|HERVE-int	+	chr8	8177071	8180542	STRG.44698.1	+	8177071,8177754	8177178,8180542	1.000000
lower_leg_skin_female_adult_51_years	chr5	76811765	76811839	76811786	+	High_confidence	5	5	33	2.716644	4.294246	chr5	76811568	76813693	Retroposon|SVA|SVA_D	+	chr5	76811638	76835315	STRG.30419.2	+	76811638,76832689	76812387,76835315	1.000000
lower_leg_skin_female_adult_51_years	chr1	209429209	209429333	209429209	+	High_confidence	14	14	142	11.689802	5.941609	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.626761
lower_leg_skin_female_adult_51_years	chr17	67348823	67348824	67348823	-	RAMPAGE_only	7	7	7	0.576258	2.521641	chr17	67348715	67349005	SINE|Alu|AluJo	+	chr17	67340773	67366547	PSMD12|ENST00000584008.5	-	67340773,67342185,67344605,67345744,67347115,67347335,67348549,67350228,67357302,67357518,67361094,67362775,67366411	67341052,67342263,67344780,67345857,67347250,67347485,67348654,67350336,67357431,67357578,67361261,67362892,67366547	1.000000
lower_leg_skin_female_adult_51_years	chr4	48382876	48382924	48382923	+	High_confidence	4	4	21	1.728774	3.884184	chr4	48382966	48383189	SINE|Alu|AluJr4	+	chr4	48383677	48420489	SLAIN2|ENST00000510595.1	+	48383677,48394575,48420124	48383784,48394653,48420489	0.952381
lower_leg_skin_female_adult_51_years	chr9	62376632	62376642	62376632	+	High_confidence	5	5	10	0.823225	3.169925	chr9	62376600	62376639	SINE|MIR|MIRb	+	chr9	62376516	62434385	FGF7P6|ENST00000452826.2	+	62376516,62432875	62376813,62434385	0.900000
lower_leg_skin_female_adult_51_years	chr3	48924759	48924767	48924764	+	High_confidence	3	3	9	0.740903	2.947703	chr3	48924715	48924993	SINE|Alu|AluSc8	-	chr3	48924715	48945181	ARIH2|ENST00000463204.5	+	48924715,48927461,48945135	48924839,48927813,48945181	0.666667
lower_leg_skin_female_adult_51_years	chr11	112151709	112151765	112151764	-	RAMPAGE_only	5	5	15	1.234838	3.521641	chr11	112151537	112152480	LINE|L2|L2c	+	chr11	112143682	112164074	STRG.62070.5	-	112143682,112148602,112150071,112154974,112163905	112143817,112148736,112153603,112155061,112164074	0.933333
lower_leg_skin_female_adult_51_years	chr10	102449836	102449845	102449836	+	High_confidence	3	3	12	0.987871	3.418296	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.833333
lower_leg_skin_female_adult_51_years	chr5	12490230	12490231	12490230	+	High_confidence	126	138	155	12.759995	5.292812	chr5	12490211	12490322	LTR|ERV1|LTR7Y	+	chr5	12490227	12493746	STRG.28936.1	+	12490227,12491497	12490468,12493746	0.800000
lower_leg_skin_female_adult_51_years	chr2	113184962	113184984	113184983	+	High_confidence	2	2	7	0.576258	2.584963	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.714286
lower_leg_skin_female_adult_51_years	chr5	181205872	181205884	181205872	-	High_confidence	2	2	8	0.658580	2.750000	chr5	181205821	181206385	LINE|L2|L2b	+	chr5	181205360	181206120	AC008443.3|ENST00000503314.1	-	181205360,181205993	181205689,181206120	0.500000
lower_leg_skin_female_adult_51_years	chr9	127461060	127461106	127461089	+	RAMPAGE_only	2	2	8	0.658580	2.750000	chr9	127460847	127461152	SINE|Alu|AluSg	-	chr9	127452254	127503501	LRSAM1|NM_001005374.3	+	127452254,127454495,127454997,127455575,127457315,127459002,127461172,127462251,127467739,127473800,127478933,127479382,127479838,127481182,127482949,127485735,127487675,127489443,127491214,127492801,127495319,127495963,127497252,127501009,127502773	127452299,127454599,127455054,127455620,127457393,127459071,127461257,127462373,127467830,127473931,127478963,127479505,127479978,127481227,127483020,127485835,127487763,127489518,127491295,127492897,127495418,127496095,127497334,127501143,127503501	0.500000
lower_leg_skin_female_adult_51_years	chr8	99892036	99892057	99892056	-	RAMPAGE_only	41	41	82	6.750449	4.746614	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
lower_leg_skin_female_adult_51_years	chr6	3076863	3076930	3076929	+	High_confidence	4	4	20	1.646451	3.997670	chr6	3076851	3076944	SINE|tRNA|LFSINE_Vert	-	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.950000
lower_leg_skin_female_adult_51_years	chr7	64892404	64892526	64892525	+	RAMPAGE_only	54	57	162	13.336253	5.632348	chr7	64892505	64893212	LTR|ERV1|LTR9A1	-	chr7	64882512	64930791	STRG.40957.11	+	64882512,64897347,64917029,64917580,64918196,64927653	64893897,64898054,64917118,64917707,64918292,64930791	1.000000
lower_leg_skin_female_adult_51_years	chr11	7905910	7905946	7905925	-	High_confidence	27	34	71	5.844901	5.501860	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7696504	7905955	STRG.58621.14	-	7696504,7696708,7700295,7701323,7701715,7702156,7703697,7704564,7879006,7879594,7881088,7881955,7882859,7905602	7696589,7698773,7700485,7701475,7701811,7702329,7703789,7704674,7879083,7879759,7881149,7882073,7882933,7905955	0.788732
lower_leg_skin_female_adult_51_years	chr14	91462180	91462236	91462180	-	High_confidence	7	7	35	2.881289	4.593429	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.657143
lower_leg_skin_female_adult_51_years	chr19	34860643	34860673	34860643	-	High_confidence	3	4	12	0.987871	2.522055	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.583333
lower_leg_skin_female_adult_51_years	chr15	92939383	92939421	92939383	+	High_confidence	2	2	16	1.317161	3.373557	chr15	92939359	92939489	DNA|hAT-Charlie|MER5A	+	chr15	92939653	92949228	CHD2|ENST00000637613.1	+	92939653,92941821,92942842,92944414,92945820,92946037,92946247,92948951	92939718,92941955,92943068,92944515,92945865,92946082,92946340,92949228	0.687500
lower_leg_skin_female_adult_51_years	chr1	166850042	166850055	166850054	+	RAMPAGE_only	6	7	12	0.987871	3.418296	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
lower_leg_skin_female_adult_51_years	chr14	49789498	49789513	49789498	-	RAMPAGE_only	2	2	7	0.576258	2.584963	chr14	49789398	49789451	LINE|L2|L2a	-	chr14	49783813	49800800	NEMF|ENST00000556691.5	-	49783813,49784924,49785091,49785219,49786717,49789145,49789495,49795790,49799474,49799635,49800419	49784713,49785004,49785135,49785320,49786750,49789343,49789573,49795944,49799524,49799678,49800800	0.714286
lower_leg_skin_female_adult_51_years	chr7	112452418	112452437	112452418	+	High_confidence	2	2	8	0.658580	3.000000	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112458982	IFRD1|ENST00000440625.5	+	112452057,112455762,112456001,112456913,112458860	112452511,112455867,112456086,112457038,112458982	0.750000
lower_leg_skin_female_adult_51_years	chr17	64764501	64764535	64764534	-	RAMPAGE_only	4	4	16	1.317161	3.500000	chr17	64764423	64764603	SINE|Alu|AluSx1	+	chr17	64761911	64762710	BPTFP1|ENST00000579209.1	-	64761911,64762354	64762047,64762710	1.000000
lower_leg_skin_female_adult_51_years	chr11	65431773	65432065	65432016	+	RAMPAGE_only	60	69	488	40.173404	6.571493	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
lower_leg_skin_female_adult_51_years	chr20	41345544	41345551	41345544	+	High_confidence	17	17	58	4.774708	5.188067	chr20	41345479	41345635	SINE|MIR|MIR1_Amn	-	chr20	41345278	41358829	STRG.91018.8	+	41345278,41347551,41348618,41349088,41349773,41350054,41351820,41352059,41352605,41352797,41354644,41354819,41355895,41357039,41357360,41357881,41358236,41358438,41358721	41345995,41347647,41348887,41349172,41349894,41350397,41351920,41352220,41352699,41352867,41354737,41354863,41356034,41357153,41357447,41358034,41358351,41358542,41358829	0.948276
lower_leg_skin_female_adult_51_years	chr22	44089068	44089069	44089068	+	RAMPAGE_only	7	9	9	0.740903	2.503258	chr22	44088936	44089094	DNA|hAT-Charlie|MER102a	+	chr22	44087882	44094692	STRG.95036.5	+	44087882,44093931	44089539,44094692	1.000000
lower_leg_skin_female_adult_51_years	chr11	62840387	62840399	62840398	-	High_confidence	7	8	13	1.070193	3.251629	chr11	62840202	62840505	SINE|Alu|AluY	+	chr11	62832951	62840380	WDR74|ENST00000525752.5	-	62832951,62833617,62833791,62834275,62834426,62835430,62835694,62835960,62839113,62839321,62839540,62840077	62833131,62833674,62833937,62834331,62834527,62835532,62835841,62836036,62839235,62839428,62839867,62840380	0.538462
lower_leg_skin_female_adult_51_years	chr4	88747951	88747978	88747977	-	RAMPAGE_only	6	6	14	1.152516	3.546594	chr4	88747887	88748191	SINE|Alu|AluY	-	chr4	88731832	88749867	FAM13A|ENST00000508360.5	-	88731832,88737471,88739029,88746931,88747630,88748951,88749770	88732198,88737555,88739125,88747015,88747851,88749033,88749867	0.857143
lower_leg_skin_female_adult_51_years	chr17	43508424	43508494	43508424	+	RAMPAGE_only	6	6	32	2.634322	3.988609	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	1.000000
lower_leg_skin_female_adult_51_years	chr21	33931121	33931156	33931146	+	High_confidence	8	8	25	2.058064	3.688722	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.920000
lower_leg_skin_female_adult_51_years	chr12	2798809	2798822	2798809	+	High_confidence	3	4	7	0.576258	2.807355	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.571429
lower_leg_skin_female_adult_51_years	chr1	45005805	45005858	45005805	-	High_confidence	4	4	16	1.317161	3.506891	chr1	45004848	45005768	LINE|L2|L2c	-	chr1	45002539	45005588	HECTD3|ENST00000486132.5	-	45002539,45003668,45003854,45004059,45004247,45004599	45003576,45003740,45003936,45004134,45004377,45005588	0.937500
lower_leg_skin_female_adult_51_years	chr3	188947224	188947237	188947236	+	High_confidence	8	10	23	1.893419	3.880180	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.521739
lower_leg_skin_female_adult_51_years	chr15	57516588	57516609	57516608	+	RAMPAGE_only	8	9	15	1.234838	3.506891	chr15	57516656	57516717	SINE|MIR|MIR	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
lower_leg_skin_female_adult_51_years	chr16	81664304	81664344	81664304	+	RAMPAGE_only	9	9	46	3.786837	4.108768	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.956522
lower_leg_skin_female_adult_51_years	chr1	110041749	110041825	110041824	+	High_confidence	4	4	24	1.975741	4.168296	chr1	110041871	110041959	LINE|L1|L1ME4b	+	chr1	110041170	110074641	STRIP1|ENST00000473429.5	+	110041170,110043087,110043638,110044839,110045014,110046679,110047541,110047771,110049111,110050955,110051682,110053664,110072454,110074126	110041861,110043270,110043856,110044905,110045078,110046751,110047616,110047869,110050409,110051060,110051887,110054802,110072596,110074641	0.916667
lower_leg_skin_female_adult_51_years	chr10	73795626	73795657	73795626	+	High_confidence	2	2	8	0.658580	2.750000	chr10	73795675	73795984	SINE|Alu|AluJb	+	chr10	73796265	73801432	STRG.56006.9	+	73796265,73796773,73797112,73797376,73797780,73798229,73799001,73800010,73800295,73800639,73801016,73801315	73796403,73797014,73797271,73797605,73798070,73798453,73799490,73800170,73800472,73800759,73801195,73801432	1.000000
lower_leg_skin_female_adult_51_years	chr19	51069383	51069542	51069500	-	High_confidence	186	186	604	49.722820	7.537828	chr19	51069174	51069685	LINE|L2|L2-1_AMi	+	chr19	51067016	51069508	STRG.88688.10	-	51067016	51069508	0.759934
lower_leg_skin_female_adult_51_years	chr1	147760601	147760609	147760601	-	High_confidence	3	3	9	0.740903	2.947703	chr1	147760317	147760652	LINE|L2|L2c	+	chr1	147756198	147760606	GJA5|ENST00000579774.2	-	147756198,147760498	147759271,147760606	1.000000
lower_leg_skin_female_adult_51_years	chr12	111841693	111841716	111841693	-	High_confidence	3	3	11	0.905548	2.663533	chr12	111841557	111841731	SINE|MIR|MIRb	+	chr12	111839776	111841710	MAPKAPK5-AS1|ENST00000590479.5	-	111839776,111840332,111841326,111841683	111840003,111840477,111841470,111841710	0.909091
lower_leg_skin_female_adult_51_years	chr7	64999443	64999444	64999443	-	RAMPAGE_only	5	5	7	0.576258	2.807355	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64990808	65006653	ERV3-1|ENST00000394323.2	-	64990808,65006540	64993414,65006653	1.000000
lower_leg_skin_female_adult_51_years	chr12	46516618	46516619	46516618	+	High_confidence	15	16	17	1.399483	3.616875	chr12	46510152	46517361	LINE|L1|L1PA14	-	chr12	46516608	46517878	STRG.64742.1	+	46516608	46517878	0.647059
lower_leg_skin_female_adult_51_years	chr1	112699217	112699218	112699217	+	High_confidence	8	8	11	0.905548	3.121928	chr1	112699125	112699293	DNA|hAT-Charlie|MER5B	+	chr1	112698307	112700739	MOV10|ENST00000490413.1	+	112698307,112698714,112699457,112699893,112700415	112698478,112698789,112699810,112700340,112700739	0.909091
lower_leg_skin_female_adult_51_years	chr5	33297955	33298000	33297999	-	High_confidence	14	15	39	3.210579	4.681881	chr5	33297738	33298188	LTR|ERV1|MER48	-	chr5	33023054	33297910	AC010343.3|ENST00000510327.1	-	33023054,33263499,33297731	33023327,33263666,33297910	0.846154
lower_leg_skin_female_adult_51_years	chr7	44619050	44619051	44619050	+	RAMPAGE_only	43	43	44	3.622192	4.897081	chr7	44618793	44619481	LTR|ERVL|MER21A	+	chr7	44606638	44709066	OGDH|ENST00000222673.5	+	44606638,44624316,44645326,44647656,44666735,44673786,44674410,44675177,44675969,44681719,44693824,44694423,44696024,44696428,44696913,44697369,44697603,44698191,44700140,44701542,44707224,44707581,44707878	44606653,44624565,44645518,44647759,44666851,44673941,44674557,44675268,44676149,44681848,44694004,44694576,44696127,44696557,44697064,44697497,44697782,44698263,44700269,44701615,44707388,44707736,44709066	0.545455
lower_leg_skin_female_adult_51_years	chr11	65440302	65440806	65440781	+	RAMPAGE_only	108	109	1964	161.681487	7.181702	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.999491
lower_leg_skin_female_adult_51_years	chrX	73841842	73841874	73841862	-	High_confidence	6	6	39	3.210579	4.019831	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.871795
lower_leg_skin_female_adult_51_years	chr15	82935376	82935416	82935376	-	RAMPAGE_only	2	2	11	0.905548	2.846439	chr15	82934248	82936442	LINE|L2|L2a	+	chr15	82848982	82952721	HOMER2|ENST00000450735.6	-	82848982,82851150,82852141,82854643,82859028,82864166,82875272,82892684,82952530	82849903,82851231,82852252,82854800,82859135,82864259,82875404,82892841,82952721	0.727273
lower_leg_skin_female_adult_51_years	chr1	39567998	39567999	39567998	-	High_confidence	5	6	7	0.576258	2.521641	chr1	39567975	39568281	SINE|Alu|AluY	+	chr1	39564384	39568856	PABPC4|ENST00000525669.5	-	39564384,39565105,39567750,39568801	39564542,39565378,39567846,39568856	1.000000
lower_leg_skin_female_adult_51_years	chr11	112152519	112152546	112152519	-	RAMPAGE_only	4	4	8	0.658580	2.750000	chr11	112152486	112152914	LTR|ERVL-MaLR|MLT1J	+	chr11	112143682	112164074	STRG.62070.5	-	112143682,112148602,112150071,112154974,112163905	112143817,112148736,112153603,112155061,112164074	1.000000
lower_leg_skin_female_adult_51_years	chr2	159428326	159428357	159428356	-	RAMPAGE_only	14	14	25	2.058064	4.175736	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.600000
lower_leg_skin_female_adult_51_years	chr16	21048703	21048704	21048703	-	High_confidence	35	35	36	2.963612	4.378864	chr16	21042672	21048703	LINE|L1|L1PA2	-	chr16	21037764	21048695	STRG.77761.1	-	21037764,21039851,21042026,21048605	21037980,21039943,21042203,21048695	0.722222
lower_leg_skin_female_adult_51_years	chr1	9894207	9894258	9894251	-	RAMPAGE_only	12	12	57	4.692385	5.296464	chr1	9894071	9894347	LINE|L1|L1MC4	-	chr1	9850449	9893237	CTNNBIP1|ENST00000377258.5	-	9850449,9871186,9871968,9877904,9893008	9850776,9871277,9872088,9877989,9893237	0.614035
lower_leg_skin_female_adult_51_years	chr2	201633686	201633687	201633686	-	High_confidence	4	5	7	0.576258	2.521641	chr2	201633665	201634215	LTR|ERVL|MER68	-	chr2	201627359	201633403	TMEM237|ENST00000466641.5	-	201627359,201628075,201629229,201629728,201632050,201633310	201627438,201628149,201629421,201629852,201632208,201633403	1.000000
lower_leg_skin_female_adult_51_years	chr8	12522682	12522704	12522682	+	RAMPAGE_only	4	6	16	1.317161	2.952820	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12564259	12567033	STRG.44994.5	+	12564259	12567033	0.937500
lower_leg_skin_female_adult_51_years	chr7	76728677	76728691	76728677	-	RAMPAGE_only	2	2	11	0.905548	3.121928	chr7	76728485	76734513	LINE|L1|L1PA3	+	chr7	76611331	76674881	STRG.41809.1	-	76611331,76611721,76618182,76625521,76625999,76650397,76650755,76674829	76611591,76611813,76618615,76625683,76626215,76650576,76650882,76674881	0.545455
lower_leg_skin_female_adult_51_years	chrX	103607551	103607571	103607551	+	High_confidence	3	3	10	0.823225	2.947703	chrX	103607556	103607707	SINE|MIR|MIRb	+	chrX	103607450	103609927	TCEAL3|ENST00000372628.5	+	103607450,103608603,103609042	103607716,103608673,103609927	0.900000
lower_leg_skin_female_adult_51_years	chr1	155478055	155478062	155478061	-	RAMPAGE_only	4	5	14	1.152516	3.026987	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.928571
lower_leg_skin_female_adult_51_years	chr18	39800293	39800316	39800315	-	High_confidence	6	10	22	1.811096	3.884184	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.636364
lower_leg_skin_female_adult_51_years	chr12	21472448	21472449	21472448	-	RAMPAGE_only	10	10	11	0.905548	2.921928	chr12	21472270	21472755	LTR|ERV1|MER66D	-	chr12	21469801	21501551	RECQL|ENST00000421138.6	-	21469801,21470968,21471427,21473550,21474840,21475467,21475675,21476910,21477802,21483375,21486478,21490198,21491518,21499554,21501169,21501412	21470346,21471098,21471647,21473642,21474979,21475585,21475824,21476992,21477969,21483574,21486585,21490378,21491716,21499615,21501215,21501551	0.727273
lower_leg_skin_female_adult_51_years	chr7	108528140	108528163	108528160	-	High_confidence	4	4	10	0.823225	2.725481	chr7	108528020	108528640	LINE|L2|L2c	+	chr7	108470421	108528161	PNPLA8|NM_001256011.2	-	108470421,108479183,108487758,108491409,108496583,108497482,108502490,108514143,108514435,108521475,108528056	108472675,108479379,108487953,108491467,108496755,108497577,108502642,108514293,108515447,108521521,108528161	0.500000
lower_leg_skin_female_adult_51_years	chr18	23474860	23474882	23474881	+	RAMPAGE_only	3	3	7	0.576258	2.584963	chr18	23474513	23474894	LINE|L2|L2c	+	chr18	23472068	23481365	STRG.84466.7	+	23472068,23474947,23477005,23477178,23479316,23481171	23473483,23475107,23477086,23477268,23479424,23481365	0.714286
lower_leg_skin_female_adult_51_years	chr19	51023583	51023604	51023583	-	RAMPAGE_only	5	5	14	1.152516	2.950212	chr19	51023384	51023684	SINE|Alu|AluSx	-	chr19	51022689	51026616	KLK11|ENST00000594827.5	-	51022689,51023091,51024633,51025591,51026537	51022697,51024310,51024794,51025666,51026616	0.714286
lower_leg_skin_female_adult_51_years	chr16	58423230	58423260	58423230	+	High_confidence	6	6	13	1.070193	3.251629	chr16	58423064	58423375	LINE|L1|L1ME3G	-	chr16	58423170	58462470	STRG.78477.2	+	58423170,58435691,58461470,58462153	58423348,58435823,58461582,58462470	0.769231
lower_leg_skin_female_adult_51_years	chr15	82935284	82935337	82935325	-	RAMPAGE_only	3	3	17	1.399483	4.000000	chr15	82934248	82936442	LINE|L2|L2a	+	chr15	82848982	82952721	HOMER2|ENST00000450735.6	-	82848982,82851150,82852141,82854643,82859028,82864166,82875272,82892684,82952530	82849903,82851231,82852252,82854800,82859135,82864259,82875404,82892841,82952721	0.764706
lower_leg_skin_female_adult_51_years	chr20	2325858	2325868	2325858	+	RAMPAGE_only	4	4	8	0.658580	2.807355	chr20	2325789	2325878	SINE|MIR|MIR3	+	chr20	2296000	2341078	TGM3|ENST00000381458.5	+	2296000,2309656,2310177,2311010,2312897,2317067,2317349,2325848,2328119,2332001,2335115,2339853,2340433	2296070,2309830,2310417,2311129,2313026,2317245,2317485,2325952,2328365,2332310,2335273,2339987,2341078	0.875000
lower_leg_skin_female_adult_51_years	chr18	46087042	46087073	46087042	-	High_confidence	5	5	16	1.317161	3.625000	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.937500
lower_leg_skin_female_adult_51_years	chr19	49086520	49086559	49086546	+	High_confidence	11	12	39	3.210579	4.823864	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.769231
lower_leg_skin_female_adult_51_years	chr4	56657793	56657877	56657801	-	RAMPAGE_only	20	22	76	6.256514	5.478623	chr4	56657736	56657851	SINE|MIR|MIR3	-	chr4	56647997	56656525	HOPX|ENST00000556614.6	-	56647997,56655856,56656343	56648797,56656012,56656525	0.842105
lower_leg_skin_female_adult_51_years	chr20	25296873	25296916	25296873	+	RAMPAGE_only	15	16	48	3.951482	4.662782	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	1.000000
lower_leg_skin_female_adult_51_years	chr11	65433979	65434135	65434041	+	RAMPAGE_only	13	14	75	6.174191	4.910234	chr11	65433870	65434194	LINE|L1|L1ME3F	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
lower_leg_skin_female_adult_51_years	chr6	89656042	89656047	89656045	-	RAMPAGE_only	7	9	22	1.811096	4.021928	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89653924	89657295	STRG.36731.6	-	89653924,89654163,89655763	89654002,89654334,89657295	0.818182
lower_leg_skin_female_adult_51_years	chr17	69314704	69314705	69314704	-	High_confidence	8	8	12	0.987871	3.084963	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	0.833333
lower_leg_skin_female_adult_51_years	chr1	6472186	6472209	6472208	-	High_confidence	5	5	9	0.740903	3.000000	chr1	6472075	6472210	LINE|L2|L2b	+	chr1	6467121	6471583	PLEKHG5|ENST00000487949.4	-	6467121,6467824,6469041,6469334,6469543,6470235,6470505,6470734,6470989	6467572,6468586,6469241,6469450,6469676,6470355,6470643,6470884,6471583	0.666667
lower_leg_skin_female_adult_51_years	chr9	133104483	133104514	133104483	-	High_confidence	3	3	11	0.905548	2.646439	chr9	133104414	133104534	SINE|MIR|MIRc	+	chr9	133102517	133104602	RALGDS|ENST00000471109.1	-	133102517,133102778,133103229,133103746,133104262	133102571,133102900,133103262,133103833,133104602	0.545455
lower_leg_skin_female_adult_51_years	chr12	26832690	26832767	26832766	-	High_confidence	4	4	27	2.222709	4.430632	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.851852
lower_leg_skin_female_adult_51_years	chr4	75127193	75127264	75127224	-	RAMPAGE_only	5	5	33	2.716644	4.248495	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.969697
lower_leg_skin_female_adult_51_years	chr19	9140390	9140428	9140427	+	High_confidence	27	27	127	10.454964	5.932678	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.826772
lower_leg_skin_female_adult_51_years	chr5	142875135	142875157	142875156	+	High_confidence	3	3	9	0.740903	2.947703	chr5	142875200	142875313	SINE|MIR|MIR3	+	chr5	142874892	142919443	ARHGAP26|ENST00000475287.2	+	142874892,142879373,142885297,142894237,142901934,142903539,142907703,142913198,142919210	142875171,142879445,142885399,142894348,142902039,142903669,142907804,142913293,142919443	1.000000
lower_leg_skin_female_adult_51_years	chr4	174554994	174554996	174554994	+	High_confidence	46	83	95	7.820642	5.767391	chr4	174554772	174555189	LTR|ERV1|LTR12B	+	chr4	174555014	174559925	STRG.28467.1	+	174555014,174559631	174555214,174559925	0.800000
lower_leg_skin_female_adult_51_years	chr12	120067297	120067298	120067297	+	RAMPAGE_only	6	6	7	0.576258	2.584963	chr12	120067305	120067401	SINE|MIR|MIR3	+	chr12	119989868	120068780	STRG.67309.4	+	119989868,119998520,119999760,120061709,120064732	119990297,119998736,119999912,120061826,120068780	0.714286
lower_leg_skin_female_adult_51_years	chr19	15829094	15829095	15829094	+	High_confidence	29	30	33	2.716644	4.680758	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	0.909091
lower_leg_skin_female_adult_51_years	chr11	67848672	67848702	67848701	-	High_confidence	50	50	130	10.701931	5.852068	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67846352	67848719	STRG.60426.2	-	67846352,67848565	67848007,67848719	0.884615
lower_leg_skin_female_adult_51_years	chr5	160412462	160412508	160412462	-	RAMPAGE_only	3	3	14	1.152516	3.235926	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160406348	160408421	SLU7|ENST00000520841.1	-	160406348,160407475,160407745,160407970,160408328	160406629,160407615,160407813,160408068,160408421	0.571429
lower_leg_skin_female_adult_51_years	chr20	24930618	24930666	24930639	+	High_confidence	28	29	102	8.396900	5.584494	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930659	24932983	STRG.90427.1	+	24930659,24931346	24930774,24932983	0.941176
lower_leg_skin_female_adult_51_years	chr10	110885060	110885164	110885091	+	High_confidence	32	37	127	10.454964	5.875298	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110885252	110898122	PDCD4|ENST00000462577.5	+	110885252,110887664,110890599,110894090,110894411,110895947,110898027	110885366,110887814,110890670,110894198,110894522,110896087,110898122	0.566929
lower_leg_skin_female_adult_51_years	chr11	65431056	65431196	65431195	+	RAMPAGE_only	11	11	51	4.198450	5.068692	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.960784
lower_leg_skin_female_adult_51_years	chr7	64949085	64949169	64949112	+	RAMPAGE_only	5	6	35	2.881289	4.498940	chr7	64948006	64950297	LTR|ERVK|HERVK9-int	+	chr7	64947673	64950671	STRG.40985.2	+	64947673,64949115,64950203	64947955,64949409,64950671	0.942857
lower_leg_skin_female_adult_51_years	chr17	40476605	40477666	40476667	-	RAMPAGE_only	342	342	3165	260.550870	8.042980	chr17	40476583	40476881	SINE|Alu|AluSx	+	chr17	40475827	40480875	TNS4|ENST00000394072.7	-	40475827,40478306,40478579,40480699	40477729,40478333,40478648,40480875	0.998420
lower_leg_skin_female_adult_51_years	chr3	197546731	197546736	197546731	-	RAMPAGE_only	47	71	105	8.643868	5.196153	chr3	197546665	197546787	SINE|MIR|MIR3	+	chr3	197536141	197554748	STRG.23889.6	-	197536141,197546360,197554561	197538952,197546486,197554748	0.685714
lower_leg_skin_female_adult_51_years	chr7	64949232	64949234	64949232	+	RAMPAGE_only	3	6	8	0.658580	2.750000	chr7	64948006	64950297	LTR|ERVK|HERVK9-int	+	chr7	64947673	64950671	STRG.40985.2	+	64947673,64949115,64950203	64947955,64949409,64950671	0.875000
lower_leg_skin_female_adult_51_years	chr10	62827087	62827104	62827087	-	RAMPAGE_only	27	27	62	5.103998	5.587182	chr10	62826881	62827087	SINE|MIR|MIRc	-	chr10	62811995	62819167	EGR2|NM_001136178.1	-	62811995,62815860,62818540,62819105	62814468,62816069,62818647,62819167	0.806452
lower_leg_skin_female_adult_51_years	chr16	10531309	10531343	10531342	-	RAMPAGE_only	3	3	11	0.905548	3.121928	chr16	10531325	10531629	SINE|Alu|AluSx	-	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.909091
lower_leg_skin_female_adult_51_years	chr21	46256892	46256893	46256892	-	High_confidence	5	6	8	0.658580	2.807355	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.625000
lower_leg_skin_female_adult_51_years	chr9	129010434	129010461	129010460	-	RAMPAGE_only	5	5	9	0.740903	2.503258	chr9	129010444	129010507	LINE|L2|L2a	-	chr9	129007791	129012016	SH3GLB2|ENST00000479237.5	-	129007791,129009105,129009452,129009770,129010119,129010669	129008791,129009346,129009467,129009871,129010209,129012016	1.000000
lower_leg_skin_female_adult_51_years	chr15	71972206	71972207	71972206	+	High_confidence	11	11	11	0.905548	2.845351	chr15	71971811	71972688	LTR|ERVL|MER21A	+	chr15	71972205	72040265	AC022872.1|ENST00000568391.1	+	71972205,71993692,71999012,72036514,72039935	71972317,71993788,71999080,72036689,72040265	0.636364
lower_leg_skin_female_adult_51_years	chr19	10564933	10564938	10564937	-	RAMPAGE_only	8	9	13	1.070193	3.334679	chr19	10564755	10564893	SINE|MIR|MIRb	-	chr19	10553575	10565971	KRI1|ENST00000478863.5	-	10553575,10555086,10555284,10557551,10557971,10558163,10559358,10559612,10559809,10560311,10561002,10561168,10561666,10561790,10562728,10564928,10565716,10565905	10554281,10555185,10555349,10557895,10558060,10558239,10559529,10559708,10559936,10560448,10561080,10561265,10561716,10561845,10562837,10565034,10565790,10565971	1.000000
lower_leg_skin_female_adult_51_years	chr20	52105663	52105666	52105665	-	High_confidence	13	18	20	1.646451	3.281373	chr20	52105641	52105800	DNA|hAT-Charlie|MER5A1	-	chr20	52084010	52105644	ZFP64|ENST00000371523.8	-	52084010,52088391,52097372,52098437,52105131	52085266,52088643,52097435,52098587,52105644	0.850000
lower_leg_skin_female_adult_51_years	chr17	19281937	19281971	19281937	+	High_confidence	5	5	19	1.564128	3.836592	chr17	19281937	19282036	LINE|L2|L2a	-	chr17	19281954	19335194	EPN2|ENST00000395620.6	+	19281954,19309884,19312051,19313104,19328710,19329560,19331852,19333955	19283714,19309997,19312144,19313279,19328887,19329647,19332068,19335194	0.947368
lower_leg_skin_female_adult_51_years	chr3	136991877	136991886	136991885	+	RAMPAGE_only	4	4	8	0.658580	2.500000	chr3	136991603	136991909	SINE|Alu|AluSx1	-	chr3	136980473	137011079	IL20RB|ENST00000475972.1	+	136980473,136982159,136986693,136989440,136991937,136995413,137010112	136980592,136982350,136986784,136989565,136992088,136995556,137011079	0.875000
lower_leg_skin_female_adult_51_years	chr1	209429061	209429118	209429061	+	High_confidence	10	11	43	3.539870	4.330464	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429082	209430621	MIR205HG|ENST00000444286.1	+	209429082,209430424	209429408,209430621	0.627907
lower_leg_skin_female_adult_51_years	chr2	72032806	72032825	72032808	-	High_confidence	13	25	71	5.844901	5.171861	chr2	72032754	72032857	SINE|MIR|MIRc	+	chr2	72031531	72033410	STRG.11504.2	-	72031531,72032710	72032055,72033410	0.816901
lower_leg_skin_female_adult_51_years	chr9	39810023	39810024	39810023	-	High_confidence	7	7	11	0.905548	2.646439	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803685	39810013	STRG.50128.4	-	39803685,39809485	39803859,39810013	0.909091
lower_leg_skin_female_adult_51_years	chr22	25032370	25032385	25032370	+	RAMPAGE_only	14	15	35	2.881289	4.307715	chr22	25032214	25032434	SINE|MIR|MIRc	-	chr22	25027973	25197448	KIAA1671|NM_001145206.1	+	25027973,25032608,25038759,25049229,25170819,25174239,25177347,25181698,25184976,25190701,25192405	25029540,25032696,25041525,25049364,25170938,25174489,25177522,25181823,25185119,25190784,25197448	1.000000
lower_leg_skin_female_adult_51_years	chr5	113105918	113105924	113105923	-	RAMPAGE_only	29	29	71	5.844901	5.203784	chr5	113105908	113106075	DNA|hAT-Charlie|MER5B	+	chr5	113101542	113104625	MCC|ENST00000505604.1	-	113101542,113104191	113101945,113104625	0.845070
lower_leg_skin_female_adult_51_years	chr11	65430606	65430905	65430790	+	RAMPAGE_only	71	75	668	54.991463	5.665953	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.997006
lower_leg_skin_female_adult_51_years	chr2	29175333	29175402	29175401	+	High_confidence	6	6	23	1.893419	3.975418	chr2	29175307	29175605	LINE|CR1|L3	+	chr2	29175362	29181758	CLIP4|ENST00000481628.1	+	29175362,29181571	29175600,29181758	0.608696
lower_leg_skin_female_adult_51_years	chr19	45450734	45450766	45450765	-	High_confidence	11	11	32	2.634322	4.515320	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.968750
lower_leg_skin_female_adult_51_years	chr1	54850925	54850964	54850925	-	RAMPAGE_only	4	6	19	1.564128	3.614369	chr1	54850787	54850913	SINE|MIR|MIR3	-	chr1	54849663	54886890	DHCR24|ENST00000648712.1	-	54849663,54853433,54854036,54865302,54871349,54875092,54875941,54879059,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54879319,54883773,54886890	0.894737
lower_leg_skin_female_adult_51_years	chr12	53464788	53464842	53464841	+	RAMPAGE_only	8	8	42	3.457547	4.409360	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.952381
lower_leg_skin_female_adult_51_years	chr2	101998968	101998993	101998968	+	High_confidence	35	35	120	9.878706	5.810157	chr2	101998446	101999045	LTR|ERVL-MaLR|MLT1H1	-	chr2	101998961	102028423	IL1R2|NR_048564.1	+	101998961,102008514,102009561,102015870,102019637,102022186,102024532,102026110,102028225	101999116,102008642,102009826,102016051,102019812,102022249,102024668,102026253,102028423	0.950000
lower_leg_skin_female_adult_51_years	chr7	2242922	2242923	2242922	+	High_confidence	6	6	6	0.493935	2.584963	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
lower_leg_skin_female_adult_51_years	chr16	2759889	2759975	2759974	+	High_confidence	4	6	26	2.140386	3.819774	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.653846
lower_leg_skin_female_adult_51_years	chr11	9576236	9576237	9576236	+	High_confidence	5	5	8	0.658580	2.750000	chr11	9576215	9576303	LINE|CR1|L3	+	chr11	9575489	9581487	WEE1|ENST00000524549.1	+	9575489,9576229,9576486,9577141	9576093,9576293,9576659,9581487	0.750000
lower_leg_skin_female_adult_51_years	chr12	3104092	3104123	3104105	+	RAMPAGE_only	6	7	33	2.716644	4.812500	chr12	3103785	3104309	LINE|L2|L2a	-	chr12	3077376	3286558	TSPAN9|ENST00000011898.9	+	3077376,3083652,3201176,3278420,3278991,3280381,3281197,3281733,3283044	3077453,3083719,3201256,3278612,3279066,3280483,3281329,3281817,3286558	0.515152
lower_leg_skin_female_adult_51_years	chr9	92720724	92720756	92720755	-	RAMPAGE_only	4	4	12	0.987871	3.277613	chr9	92720689	92720791	DNA|TcMar-Tigger|Tigger19b	-	chr9	92711362	92764801	BICD2|NM_001003800.1	-	92711362,92717796,92718538,92720299,92722655,92729023,92764504	92715463,92717948,92719582,92720755,92722808,92729236,92764801	0.916667
lower_leg_skin_female_adult_51_years	chr17	42403958	42404024	42403958	-	RAMPAGE_only	10	10	41	3.375225	4.871928	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	0.975610
lower_leg_skin_female_adult_51_years	chr1	178309956	178309979	178309969	+	RAMPAGE_only	3	4	10	0.823225	2.646439	chr1	178309765	178310059	DNA|TcMar-Tigger|Tigger9b	-	chr1	178341470	178479514	RASAL2|NM_004841.3	+	178341470,178390099,178420510,178439421,178441548,178442674,178445517,178451570,178452415,178454446,178456699,178457682,178464277,178465919,178467333,178473074	178341608,178390206,178420620,178439575,178441647,178443229,178445662,178451715,178452652,178454648,178456899,178458544,178464412,178466122,178467421,178479514	0.800000
lower_leg_skin_female_adult_51_years	chr8	129786255	129786291	129786290	-	High_confidence	2	2	7	0.576258	2.807355	chr8	129786052	129786345	SINE|Alu|AluSg7	+	chr8	129748196	129786613	STRG.48031.3	-	129748196,129749451,129749755,129750430,129751541,129751861,129752105,129752697,129760544,129762625,129765733,129776101,129777367,129786010	129748888,129749525,129750119,129750570,129751568,129751891,129752147,129752820,129761008,129762731,129765793,129776285,129777591,129786613	1.000000
lower_leg_skin_female_adult_51_years	chr11	57794012	57794057	57794012	+	RAMPAGE_only	6	6	20	1.646451	3.826875	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.900000
lower_leg_skin_female_adult_51_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	9	9	14	1.152516	3.807355	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103097307	103177218	STRG.57102.6	-	103097307,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857,103176485	103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982,103177218	0.714286
lower_leg_skin_female_adult_51_years	chr4	81154213	81154222	81154221	-	High_confidence	13	13	25	2.058064	3.762267	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.920000
lower_leg_skin_female_adult_51_years	chr16	23278233	23278268	23278235	+	High_confidence	5	9	23	1.893419	3.327340	chr16	23278204	23278287	LINE|L1|L1MB7	+	chr16	23278259	23380803	STRG.77837.2	+	23278259,23348591,23352800,23355298,23367855,23371298,23371775,23375737,23377164,23377328,23378705,23380093,23380420	23278340,23348910,23353074,23355489,23367959,23371462,23371883,23375855,23377240,23377386,23378767,23380169,23380803	0.652174
lower_leg_skin_female_adult_51_years	chr9	120534000	120534037	120534000	-	RAMPAGE_only	5	5	15	1.234838	3.521641	chr9	120533823	120534313	LINE|L2|L2c	+	chr9	120518599	120532555	CDK5RAP2|ENST00000482047.1	-	120518599,120524985,120527805,120528743,120529977,120532466	120518645,120525078,120527925,120528797,120530140,120532555	0.600000
lower_leg_skin_female_adult_51_years	chr10	60657132	60657133	60657132	-	RAMPAGE_only	15	15	19	1.564128	2.865577	chr10	60656961	60657332	LTR|ERVL-MaLR|THE1B	-	chr10	60028400	60733490	ANK3|ENST00000373827.6	-	60028400,60042671,60055657,60059339,60059697,60063110,60064156,60067934,60080536,60082614,60083491,60084601,60085156,60086676,60088146,60105904,60108829,60114224,60134270,60138963,60166590,60166823,60172307,60172899,60173087,60181328,60186714,60196144,60196526,60198339,60200128,60203001,60205791,60208035,60213411,60234687,60261858,60263834,60270130,60278773,60279049,60279537,60615185,60733262	60029826,60042759,60056036,60059430,60060006,60063254,60064288,60068009,60080618,60082737,60083617,60084830,60085253,60086884,60088358,60106059,60109054,60114331,60134373,60139087,60166653,60166896,60172403,60172998,60173186,60181427,60186912,60196243,60196625,60198537,60200227,60203100,60205890,60208233,60213510,60234786,60261957,60264020,60270229,60278872,60279148,60279639,60615224,60733490	0.631579
lower_leg_skin_female_adult_51_years	chr14	94497769	94497795	94497769	-	RAMPAGE_only	2	3	9	0.740903	3.169925	chr14	94497555	94497751	SINE|MIR|MIRb	-	chr14	94487273	94504222	SERPINA12|NM_001304461.1	-	94487273,94489619,94496372,94497763,94504032	94487494,94489767,94496643,94498430,94504222	1.000000
lower_leg_skin_female_adult_51_years	chr6	149896010	149896011	149896010	-	High_confidence	11	11	13	1.070193	2.855389	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.923077
lower_leg_skin_female_adult_51_years	chr19	55677173	55677200	55677173	+	High_confidence	15	15	23	1.893419	3.880180	chr19	55677165	55677362	SINE|MIR|MIR	+	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.826087
lower_leg_skin_female_adult_51_years	chr19	51886861	51886897	51886880	-	RAMPAGE_only	3	4	12	0.987871	3.459432	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51872549	51887920	ZNF577|ENST00000638348.1	-	51872549,51877281,51878388,51880322,51880678,51886820	51873706,51877377,51878515,51880401,51880877,51887920	0.750000
lower_leg_skin_female_adult_51_years	chr20	3187372	3187373	3187372	-	High_confidence	8	8	8	0.658580	2.750000	chr20	3187289	3187575	SINE|Alu|AluY	+	chr20	3186691	3187292	STRG.89623.1	-	3186691	3187292	0.875000
lower_leg_skin_female_adult_51_years	chr12	10363964	10363965	10363964	+	High_confidence	6	6	8	0.658580	2.750000	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.500000
lower_leg_skin_female_adult_51_years	chr6	36248343	36248358	36248357	-	High_confidence	5	5	15	1.234838	3.521641	chr6	36248284	36248483	SINE|MIR|MIR	-	chr6	36247788	36248087	STRG.35175.1	-	36247788	36248087	0.533333
lower_leg_skin_female_adult_51_years	chr15	80059915	80059926	80059918	+	High_confidence	59	65	153	12.595350	5.027092	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.967320
lower_leg_skin_female_adult_51_years	chr11	120123454	120123465	120123461	-	High_confidence	3	4	9	0.740903	2.750000	chr11	120123321	120123526	SINE|MIR|MIRc	-	chr11	120111297	120123271	TRIM29|ENST00000524816.7	-	120111297,120115337,120118222,120120572,120122953,120123189	120112476,120115414,120118321,120120665,120123055,120123271	0.555556
lower_leg_skin_female_adult_51_years	chr1	86424333	86424334	86424333	+	High_confidence	8	8	8	0.658580	2.500000	chr1	86424338	86424378	LINE|RTE-BovB|MamRTE1	+	chr1	86424085	86456558	CLCA2|ENST00000370565.4	+	86424085,86425338,86428417,86430861,86432368,86434517,86438875,86440147,86441436,86443786,86447507,86450562,86453368,86455084	86424433,86425476,86428568,86430970,86432528,86434745,86439106,86440325,86441543,86444011,86447778,86450733,86453602,86456558	1.000000
lower_leg_skin_female_adult_51_years	chr14	64087849	64087850	64087849	+	RAMPAGE_only	9	9	9	0.740903	2.725481	chr14	64087899	64088180	SINE|Alu|AluSz	+	chr14	64075614	64226430	SYNE2|ENST00000394768.6	+	64075614,64078465,64080455,64081442,64087418,64087670,64089573,64090865,64093348,64097948,64098746,64101931,64107490,64113340,64119426,64120926,64122011,64122285,64125078,64126326,64126597,64128451,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64165284,64167232,64167494,64168876,64170227,64174943,64177357,64186423,64188549,64190070,64202800,64208757,64209427,64209941,64211960,64212810,64214193,64216247,64218397,64219207,64220436,64221575,64223188,64224460,64224995,64225318	64076100,64078606,64080638,64081580,64087487,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64122427,64125210,64126479,64126807,64128553,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64165410,64167387,64167639,64168971,64170462,64175138,64177483,64186579,64188708,64190237,64202963,64208945,64209578,64210124,64212098,64213005,64214470,64216387,64218512,64219410,64220637,64221704,64223380,64224547,64225045,64226430	1.000000
lower_leg_skin_female_adult_51_years	chr11	35207855	35207858	35207857	+	RAMPAGE_only	6	10	10	0.823225	2.921928	chr11	35207888	35207973	DNA|TcMar-Tigger|MamRep137	+	chr11	35201678	35211401	CD44|ENST00000528672.1	+	35201678,35204511,35208104,35209964,35211245	35201787,35204640,35208206,35210054,35211401	0.700000
lower_leg_skin_female_adult_51_years	chr17	2667165	2667196	2667195	+	High_confidence	15	15	28	2.305031	4.238901	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.642857
lower_leg_skin_female_adult_51_years	chr11	119010661	119010675	119010667	+	High_confidence	3	4	10	0.823225	2.725481	chr11	119010449	119010690	LINE|L1|L1MC4	+	chr11	119011206	119015092	CCDC84|ENST00000583842.1	+	119011206,119011938,119013231,119014993	119011311,119012254,119013262,119015092	0.600000
lower_leg_skin_female_adult_51_years	chr1	150457343	150457388	150457343	+	RAMPAGE_only	3	3	14	1.152516	3.700440	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150364710	150473556	RPRD2|ENST00000369068.4	+	150364710,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150364919,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	0.928571
lower_leg_skin_female_adult_51_years	chr10	121974531	121974557	121974556	-	High_confidence	4	4	10	0.823225	2.641604	chr10	121974357	121974506	DNA|hAT-Charlie|MER5A	-	chr10	121959364	121974285	NSMCE4A|ENST00000468209.5	-	121959364,121959500,121960357,121961422,121963237,121965285,121967654,121970938,121974003	121959410,121959595,121960406,121961517,121963328,121965385,121967806,121971069,121974285	0.900000
lower_leg_skin_female_adult_51_years	chr8	100303406	100303407	100303406	-	High_confidence	8	8	12	0.987871	3.418296	chr8	100303086	100303537	LTR|ERVL-MaLR|MLT1D	-	chr8	100257058	100303259	RNF19A|NM_015435.4	-	100257058,100259853,100261541,100264033,100264670,100268784,100269868,100274952,100287500,100300527,100303159	100259246,100259997,100261755,100264195,100264785,100268947,100270013,100275161,100288267,100300651,100303259	0.500000
lower_leg_skin_female_adult_51_years	chr1	32768073	32768107	32768106	+	RAMPAGE_only	3	3	13	1.070193	3.084963	chr1	32768079	32768253	SINE|MIR|MIR3	+	chr1	32765666	32774970	KIAA1522|ENST00000373480.1	+	32765666,32767786,32768061,32768651,32769672,32769879,32772864	32765827,32767957,32768117,32768775,32769786,32772441,32774970	0.615385
lower_leg_skin_female_adult_51_years	chr1	155058715	155058785	155058784	+	High_confidence	15	15	32	2.634322	4.413910	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.718750
lower_leg_skin_female_adult_51_years	chr2	233691673	233691710	233691709	+	RAMPAGE_only	27	27	67	5.515611	5.603111	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233692865	233773305	UGT1A6|NM_001072.3	+	233692865,233767033,233767848,233768219,233772261	233693865,233767165,233767936,233768439,233773305	0.761194
lower_leg_skin_female_adult_51_years	chr14	50756771	50756790	50756771	-	RAMPAGE_only	2	2	7	0.576258	2.584963	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.857143
lower_leg_skin_female_adult_51_years	chr7	150323750	150323751	150323750	-	High_confidence	4	4	7	0.576258	2.807355	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	1.000000
lower_leg_skin_female_adult_51_years	chr22	46626125	46626141	46626140	+	High_confidence	4	4	8	0.658580	2.521641	chr22	46625971	46626148	LINE|L2|L2b	-	chr22	46626391	46679683	STRG.95173.2	+	46626391,46626750,46637839,46658186,46661380,46663039,46663837,46664025,46665614,46666824,46668095,46668688,46668798,46672842,46673669,46674656,46675467,46676599,46677146	46626603,46626961,46637960,46658307,46661442,46663172,46663863,46664117,46665706,46666873,46668167,46668732,46668908,46672997,46673814,46674750,46675552,46676668,46679683	0.875000
lower_leg_skin_female_adult_51_years	chr17	32684271	32684272	32684271	-	RAMPAGE_only	17	19	21	1.728774	3.821928	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32494718	32659406	MYO1D|ENST00000577352.5	-	32494718,32605086,32638721,32653842,32654476,32659114	32494915,32605241,32638835,32653947,32654621,32659406	0.761905
lower_leg_skin_female_adult_51_years	chr5	151687244	151687245	151687244	-	High_confidence	6	6	7	0.576258	2.584963	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151667473	151687224	STRG.32995.2	-	151667473,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687224	0.571429
lower_leg_skin_female_adult_51_years	chr14	80231057	80231058	80231057	-	High_confidence	15	15	15	1.234838	3.373557	chr14	80230830	80231256	LTR|ERVL|MLT2A1	-	chr14	80197524	80231054	DIO2|NM_000793.5	-	80197524,80211250,80215971,80230900	80203288,80211525,80216150,80231054	0.933333
lower_leg_skin_female_adult_51_years	chr1	178299516	178299522	178299516	+	RAMPAGE_only	5	5	15	1.234838	3.521641	chr1	178299495	178299794	SINE|Alu|AluSc	-	chr1	178341470	178479514	RASAL2|NM_004841.3	+	178341470,178390099,178420510,178439421,178441548,178442674,178445517,178451570,178452415,178454446,178456699,178457682,178464277,178465919,178467333,178473074	178341608,178390206,178420620,178439575,178441647,178443229,178445662,178451715,178452652,178454648,178456899,178458544,178464412,178466122,178467421,178479514	0.733333
lower_leg_skin_female_adult_51_years	chr10	14877038	14877063	14877062	+	RAMPAGE_only	11	14	37	3.045934	4.482289	chr10	14876839	14877141	LINE|L2|L2	-	chr10	14878782	14904315	SUV39H2|NR_034181.1	+	14878782,14896845,14899538,14901132,14902405	14878919,14897517,14899685,14901262,14904315	0.837838
lower_leg_skin_female_adult_51_years	chr12	52616916	52616933	52616921	-	RAMPAGE_only	9	9	20	1.646451	3.408695	chr12	52616874	52617038	LINE|L2|L2c	+	chr12	52608136	52618549	STRG.65248.21	-	52608136,52609246,52610614,52611203,52613687,52614578,52615278,52615460,52616165	52608452,52609281,52610835,52611329,52613852,52614674,52615339,52615610,52618549	1.000000
lower_leg_skin_female_adult_51_years	chr6	43013464	43013498	43013497	-	High_confidence	6	6	21	1.728774	3.787144	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.904762
lower_leg_skin_female_adult_51_years	chr12	643625	643636	643635	-	High_confidence	18	18	54	4.445418	5.284340	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.777778
lower_leg_skin_female_adult_51_years	chr17	41653359	41653392	41653391	-	High_confidence	5	5	20	1.646451	4.021928	chr17	41653332	41653498	SINE|Alu|AluJr	+	chr17	41648619	41654179	STRG.81745.2	-	41648619,41653190	41648914,41654179	0.550000
lower_leg_skin_female_adult_51_years	chr2	96303166	96303280	96303166	-	RAMPAGE_only	33	34	164	13.500898	5.633425	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.975610
lower_leg_skin_female_adult_51_years	chr8	133256050	133256082	133256081	-	High_confidence	4	4	14	1.152516	3.378783	chr8	133256060	133256310	SINE|MIR|MIRb	+	chr8	133237175	133256228	NDRG1|ENST00000519278.5	-	133237175,133242022,133244354,133246615,133247874,133248714,133250439,133254538	133239119,133242074,133244390,133246663,133247926,133248771,133250543,133256228	1.000000
lower_leg_skin_female_adult_51_years	chr14	80225692	80225721	80225720	-	High_confidence	4	4	12	0.987871	3.251629	chr14	80225246	80230830	LTR|ERVL|HERVL-int	-	chr14	80198901	80225286	STRG.71975.2	-	80198901,80211250,80215971,80224890	80203288,80211525,80216150,80225286	0.750000
lower_leg_skin_female_adult_51_years	chr21	29077477	29077499	29077486	+	High_confidence	7	8	18	1.481806	3.410417	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.777778
lower_leg_skin_female_adult_51_years	chr14	81170412	81170431	81170413	-	High_confidence	7	10	29	2.387354	4.582119	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.965517
lower_leg_skin_female_adult_51_years	chr13	46711841	46711842	46711841	+	RAMPAGE_only	6	6	7	0.576258	2.584963	chr13	46711708	46711858	LINE|L1|X9_LINE	-	chr13	46553259	46742733	LRCH1|ENST00000389797.7	+	46553259,46650200,46669029,46681740,46685904,46687851,46689132,46692535,46694892,46699335,46701120,46705067,46705267,46711790,46712524,46715559,46723220,46728846,46733920,46741641	46553703,46650345,46669156,46681846,46686041,46687979,46689196,46692641,46695017,46699403,46701207,46705157,46705304,46711844,46712597,46715664,46723330,46728984,46733998,46742733	0.571429
lower_leg_skin_female_adult_51_years	chr17	59619894	59619923	59619894	+	High_confidence	192	227	663	54.579850	6.207292	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.924585
lower_leg_skin_female_adult_51_years	chr9	97047233	97047260	97047233	-	RAMPAGE_only	2	2	9	0.740903	2.500000	chr9	97047207	97047493	SINE|Alu|AluSx1	-	chr9	97029676	97039643	CTSV|NM_001201575.1	-	97029676,97034725,97035527,97036522,97037251,97037492,97037917,97039606	97033048,97034843,97035693,97036747,97037398,97037615,97038053,97039643	0.666667
lower_leg_skin_female_adult_51_years	chr1	39310282	39310392	39310282	+	RAMPAGE_only	11	11	97	7.985287	5.583079	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.969072
lower_leg_skin_female_adult_51_years	chr1	166850124	166850330	166850124	+	RAMPAGE_only	28	32	152	12.513028	5.886108	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.986842
lower_leg_skin_female_adult_51_years	chr6	167271168	167271176	167271175	+	High_confidence	17	17	50	4.116127	4.116222	chr6	167271035	167271181	DNA|hAT-Charlie|MER5A	+	chr6	167271168	167296196	UNC93A|ENST00000503433.5	+	167271168,167291438,167294516,167296031	167271458,167291576,167294698,167296196	0.880000
lower_leg_skin_female_adult_51_years	chr4	686181	686182	686181	-	High_confidence	4	6	6	0.493935	2.584963	chr4	686110	686165	LINE|L2|L2a	-	chr4	681857	685498	STRG.24055.12	-	681857,682780,683608,684482,684718	682336,683367,683761,684602,685498	0.666667
lower_leg_skin_female_adult_51_years	chr11	62600186	62600210	62600186	-	High_confidence	2	2	8	0.658580	3.000000	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.500000
lower_leg_skin_female_adult_51_years	chr10	46554638	46554686	46554662	-	High_confidence	3	3	15	1.234838	3.521641	chr10	46554368	46554805	LTR|LTR|MamRep1527	+	chr10	46549043	46555530	GPRIN2|ENST00000374317.1	-	46549043,46554584,46555374	46550742,46554695,46555530	0.733333
lower_leg_skin_female_adult_51_years	chr7	107580245	107580265	107580264	+	High_confidence	202	202	914	75.242810	6.868095	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.955142
lower_leg_skin_female_adult_51_years	chr1	17639830	17639854	17639830	+	High_confidence	2	2	10	0.823225	2.725481	chr1	17639748	17639843	LINE|L2|L2c	-	chr1	17639752	17654665	ARHGEF10L|ENST00000466782.1	+	17639752,17640201,17648553,17654635	17639981,17640302,17648675,17654665	0.600000
lower_leg_skin_female_adult_51_years	chr14	105079769	105079790	105079789	-	High_confidence	4	5	14	1.152516	3.238901	chr14	105078600	105080045	Retroposon|SVA|SVA_D	-	chr14	105079333	105079862	STRG.73807.1	-	105079333	105079862	0.642857
lower_leg_skin_female_adult_51_years	chr11	65438659	65438832	65438682	+	RAMPAGE_only	32	32	317	26.096248	5.923594	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.996845
lower_leg_skin_female_adult_51_years	chr5	33297844	33297845	33297844	-	High_confidence	15	16	18	1.481806	3.454822	chr5	33297738	33298188	LTR|ERV1|MER48	-	chr5	33023054	33297910	AC010343.3|ENST00000510327.1	-	33023054,33263499,33297731	33023327,33263666,33297910	0.500000
lower_leg_skin_female_adult_51_years	chr16	58423177	58423184	58423177	+	High_confidence	20	21	44	3.622192	5.011365	chr16	58423064	58423375	LINE|L1|L1ME3G	-	chr16	58423170	58462470	STRG.78477.2	+	58423170,58435691,58461470,58462153	58423348,58435823,58461582,58462470	0.840909
lower_leg_skin_female_adult_51_years	chr9	39809843	39809865	39809856	-	High_confidence	4	4	15	1.234838	3.182006	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803685	39810013	STRG.50128.4	-	39803685,39809485	39803859,39810013	0.866667
lower_leg_skin_female_adult_51_years	chr7	43881908	43881915	43881909	-	High_confidence	3	4	14	1.152516	3.085055	chr7	43881785	43881943	LINE|L2|L2	+	chr7	43878943	43881896	URGCP|ENST00000467410.1	-	43878943,43881658	43879260,43881896	0.642857
lower_leg_skin_female_adult_51_years	chr1	45522855	45522859	45522858	-	High_confidence	133	133	214	17.617026	5.912388	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511046	45522848	STRG.2241.3	-	45511046,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522848	1.000000
lower_leg_skin_female_adult_51_years	chr8	132882161	132882176	132882161	+	High_confidence	2	2	7	0.576258	2.584963	chr8	132882148	132882322	DNA|hAT-Tip100|MER91A	-	chr8	132881871	133113496	STRG.48084.1	+	132881871,132882813,132886447,132887983,132893689,132897648,132898168,132898797,132900236,132901352,132906687,132908185,132911376,132913046,132919375,132923337,132929075,132933560,132935755,132941350,132948775,132961007,132962993,132966559,132967793,132969457,132971793,132972597,132983349,133011900,133013599,133017777,133019601,133021990,133029820,133095043,133096205,133113421	132882612,132882999,132887548,132888568,132893929,132897786,132898246,132898910,132900339,132901553,132906900,132908340,132911533,132913265,132919525,132923508,132929192,132933676,132935864,132941542,132948943,132961073,132963074,132966697,132967970,132969569,132971873,132972741,132983412,133012035,133013764,133017997,133019695,133022150,133030023,133095208,133096373,133113496	0.857143
lower_leg_skin_female_adult_51_years	chr19	55041427	55041428	55041427	-	High_confidence	5	5	7	0.576258	2.521641	chr19	55041351	55041446	DNA|hAT-Charlie|MER20	+	chr19	55039110	55041889	RDH13|ENST00000586331.1	-	55039110,55040312,55041245	55039725,55041024,55041889	0.571429
lower_leg_skin_female_adult_51_years	chr5	75336514	75336518	75336514	+	High_confidence	6	6	14	1.152516	3.392747	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.785714
lower_leg_skin_female_adult_51_years	chr20	3795750	3795789	3795750	+	High_confidence	5	5	22	1.811096	3.427333	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.954545
lower_leg_skin_female_adult_51_years	chr8	32927952	32927977	32927976	+	RAMPAGE_only	10	10	16	1.317161	3.024397	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	1.000000
lower_leg_skin_female_adult_51_years	chr14	80225047	80225048	80225047	-	High_confidence	9	9	14	1.152516	3.324863	chr14	80224809	80225246	LTR|ERVL|MLT2A1	-	chr14	80188811	80225286	STRG.71975.1	-	80188811,80202686,80211250,80215971,80224890	80188863,80203288,80211525,80216150,80225286	1.000000
lower_leg_skin_female_adult_51_years	chr19	46203082	46203083	46203082	-	High_confidence	17	17	20	1.646451	3.139354	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.650000
lower_leg_skin_female_adult_51_years	chr10	133369979	133370006	133369992	-	RAMPAGE_only	2	2	10	0.823225	2.641604	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.800000
lower_leg_skin_female_adult_51_years	chr13	98988460	98988461	98988460	-	RAMPAGE_only	9	9	10	0.823225	2.725481	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98793486	98978084	DOCK9|NM_001130048.1	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,98977783	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,98978084	0.900000
lower_leg_skin_female_adult_51_years	chr4	152652544	152652568	152652567	-	RAMPAGE_only	7	7	14	1.152516	2.931209	chr4	152652539	152652595	SINE|5S-Deu-L2|AmnSINE1	+	chr4	152618631	152680165	TMEM154|ENST00000304385.7	-	152618631,152640927,152643087,152644414,152652537,152652666,152679869	152628561,152640985,152643173,152644442,152652576,152652927,152680165	0.500000
lower_leg_skin_female_adult_51_years	chr13	29647540	29647625	29647540	+	High_confidence	5	6	24	1.975741	4.001629	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.916667
lower_leg_skin_female_adult_51_years	chrX	74260670	74260742	74260707	-	RAMPAGE_only	5	5	22	1.811096	3.880180	chrX	74260636	74260969	SINE|Alu|AluJb	+	chrX	74249688	74264095	STRG.97532.1	-	74249688	74264095	0.954545
lower_leg_skin_female_adult_51_years	chr12	91179462	91179526	91179462	-	High_confidence	315	327	1326	109.159701	7.387279	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91146165	91179513	DCN|ENST00000546391.5	-	91146165,91151653,91153095,91178341,91179361	91146252,91151792,91153189,91178585,91179513	0.527149
lower_leg_skin_female_adult_51_years	chr14	105016032	105016045	105016042	-	RAMPAGE_only	17	17	55	4.527740	5.049275	chr14	105015959	105016174	LTR|ERV1|MER89	+	chr14	105009935	105021060	CDCA4|ENST00000392590.3	-	105009935,105011159,105020998	105010633,105011935,105021060	0.854545
lower_leg_skin_female_adult_51_years	chr1	1655463	1655478	1655477	-	RAMPAGE_only	8	8	27	2.222709	4.315824	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.777778
lower_leg_skin_female_adult_51_years	chr9	128921399	128921413	128921399	+	High_confidence	27	28	49	4.033805	4.790944	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.836735
lower_leg_skin_female_adult_51_years	chr21	39022522	39022566	39022522	-	High_confidence	4	4	16	1.317161	3.506891	chr21	39022458	39022600	SINE|MIR|MIR3	+	chr21	39015040	39022880	STRG.92862.1	-	39015040,39018997,39019188,39021803	39017781,39019073,39019285,39022880	0.687500
lower_leg_skin_female_adult_51_years	chr20	3866862	3866863	3866862	+	RAMPAGE_only	11	11	15	1.234838	3.373557	chr20	3866894	3867070	SINE|MIR|MIRb	+	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	1.000000
lower_leg_skin_female_adult_51_years	chr1	44738073	44738118	44738117	+	High_confidence	6	8	23	1.893419	3.697846	chr1	44738044	44739134	Retroposon|SVA|SVA_B	+	chr1	44738118	44738862	STRG.2200.1	+	44738118	44738862	0.869565
lower_leg_skin_female_adult_51_years	chr10	46381315	46381318	46381317	+	RAMPAGE_only	9	13	15	1.234838	3.235926	chr10	46381359	46381444	DNA|hAT|MER53	+	chr10	46375775	46381923	ANXA8L1|ENST00000620353.1	+	46375775,46379884,46381145	46375872,46379975,46381923	0.866667
lower_leg_skin_female_adult_51_years	chr16	67006246	67006259	67006258	+	High_confidence	6	6	14	1.152516	3.180833	chr16	67006126	67006302	SINE|MIR|MIRb	-	chr16	67006522	67009418	CES4A|ENST00000544478.1	+	67006522,67008973	67006817,67009418	0.642857
lower_leg_skin_female_adult_51_years	chr11	75771004	75771026	75771021	+	RAMPAGE_only	6	7	29	2.387354	4.142295	chr11	75771043	75771145	LINE|CR1|L3	+	chr11	75769000	75800364	DGAT2|ENST00000604733.5	+	75769000,75790187,75790660,75796327,75797157,75798226,75800353	75769112,75790295,75790731,75796532,75797332,75798429,75800364	0.965517
lower_leg_skin_female_adult_51_years	chr2	131041542	131041556	131041542	+	High_confidence	4	4	8	0.658580	2.521641	chr2	131041522	131041617	LINE|L2|L2a	-	chr2	131041510	131044534	ARHGEF4|ENST00000525092.1	+	131041510,131043451,131044331	131041944,131043583,131044534	0.750000
lower_leg_skin_female_adult_51_years	chr8	27286759	27286815	27286814	-	RAMPAGE_only	9	9	29	2.387354	4.521641	chr8	27286694	27287214	LTR|ERVL|MER74A	+	chr8	27285808	27311238	STRG.45449.3	-	27285808,27289161,27294079,27298463,27310800	27288127,27289280,27294310,27298559,27311238	0.931034
lower_leg_skin_female_adult_51_years	chr1	201331680	201332404	201332086	+	RAMPAGE_only	76	82	1296	106.690024	7.606959	chr1	201331955	201332089	LINE|L2|L2a	-	chr1	201283451	201332993	PKP1|ENST00000367324.7	+	201283451,201293941,201313165,201316552,201317571,201318617,201320266,201321977,201323012,201324427,201324940,201325753,201328761,201330073	201283904,201294045,201313560,201316697,201317779,201318795,201320381,201322133,201323189,201324581,201325127,201325838,201328868,201332993	1.000000
lower_leg_skin_female_adult_51_years	chr17	40188621	40188660	40188659	+	High_confidence	3	3	10	0.823225	3.121928	chr17	40188437	40188679	LINE|L2|L2b	-	chr17	40188537	40193831	RAPGEFL1|ENST00000545893.5	+	40188537,40189207,40190433,40190639,40191315,40191581,40192212,40192605,40192925,40193362,40193663	40188978,40189375,40190531,40190762,40191494,40191672,40192263,40192693,40192990,40193417,40193831	1.000000
lower_leg_skin_female_adult_51_years	chr9	127451200	127451201	127451200	-	High_confidence	8	8	10	0.823225	2.641604	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.800000
lower_leg_skin_female_adult_51_years	chr1	209567774	209567778	209567774	-	High_confidence	3	4	10	0.823225	2.921928	chr1	209567578	209567919	LTR|ERVL-MaLR|MLT1I	-	chr1	209539749	209567865	STRG.7408.4	-	209539749,209541307,209566911,209567535	209540788,209541429,209566987,209567865	1.000000
lower_leg_skin_female_adult_51_years	chr3	50312710	50312763	50312762	-	High_confidence	39	44	172	14.159479	6.087103	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50302748	50312860	STRG.18929.4	-	50302748,50303787,50309658,50312303	50302980,50303953,50309777,50312860	0.831395
lower_leg_skin_female_adult_51_years	chr4	88664169	88664205	88664204	+	RAMPAGE_only	3	3	8	0.658580	2.500000	chr4	88664243	88664397	SINE|Alu|FAM	+	chr4	88605793	88708541	HERC3|ENST00000264345.7	+	88605793,88649839,88652011,88652868,88654041,88655173,88655874,88658414,88662430,88664152,88667376,88667891,88669859,88670138,88676217,88676333,88677963,88680092,88681158,88686735,88687216,88704097,88704507,88706751	88606049,88649999,88652088,88653090,88654133,88655304,88656035,88658491,88662555,88664212,88667488,88668081,88670023,88670252,88676241,88676423,88678134,88680236,88681325,88686802,88687299,88704281,88704610,88708541	0.500000
lower_leg_skin_female_adult_51_years	chr11	64226142	64226186	64226158	-	High_confidence	23	24	197	16.217542	6.763211	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.964467
lower_leg_skin_female_adult_51_years	chr11	120123371	120123405	120123371	-	High_confidence	3	3	10	0.823225	3.321928	chr11	120123321	120123526	SINE|MIR|MIRc	-	chr11	120112409	120123442	TRIM29|ENST00000525327.5	-	120112409,120115337,120118222,120120572,120122953,120123332	120112476,120115414,120118321,120120665,120123055,120123442	0.600000
lower_leg_skin_female_adult_51_years	chrX	73841945	73841972	73841948	-	High_confidence	5	5	22	1.811096	3.558519	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.681818
lower_leg_skin_female_adult_51_years	chr6	83124297	83124309	83124297	+	RAMPAGE_only	8	8	13	1.070193	3.546594	chr6	83124215	83124380	LINE|L2|L2b	-	chr6	83122862	83139367	STRG.36559.4	+	83122862,83125499,83128886,83130122,83132175,83135618,83137172	83124819,83125733,83129508,83130397,83134287,83135878,83139367	1.000000
lower_leg_skin_female_adult_51_years	chr3	11225885	11225915	11225885	-	High_confidence	3	3	20	1.646451	3.932138	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.600000
lower_leg_skin_female_adult_51_years	chr17	50908689	50908694	50908689	+	High_confidence	3	3	9	0.740903	2.500000	chr17	50908617	50908807	SINE|MIR|MIRb	-	chr17	50908677	50909417	TOB1-AS1|ENST00000519432.1	+	50908677,50909155	50908956,50909417	0.666667
lower_leg_skin_female_adult_51_years	chr15	77285049	77285052	77285049	-	High_confidence	2	2	7	0.576258	2.521641	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77108163	77285286	STRG.75769.2	-	77108163,77133004,77158502,77178789,77239781,77252366,77284957	77115319,77133750,77158696,77182040,77239889,77252526,77285286	0.714286
lower_leg_skin_female_adult_51_years	chr12	109878996	109878999	109878996	+	RAMPAGE_only	50	50	144	11.854447	5.936140	chr12	109878962	109879076	SINE|MIR|MIRb	-	chr12	109900263	109905027	TCHP|ENST00000537218.1	+	109900263,109903026,109903936,109904736	109900426,109903214,109904147,109905027	0.701389
lower_leg_skin_female_adult_51_years	chr5	76812042	76812066	76812065	+	High_confidence	4	6	12	0.987871	2.845351	chr5	76811568	76813693	Retroposon|SVA|SVA_D	+	chr5	76811638	76835315	STRG.30419.2	+	76811638,76832689	76812387,76835315	0.833333
lower_leg_skin_female_adult_51_years	chr15	45131401	45131444	45131443	+	RAMPAGE_only	2	2	10	0.823225	3.321928	chr15	45131361	45131604	SINE|MIR|MIRc	-	chr15	45130037	45133934	STRG.74149.16	+	45130037,45131470,45133863	45130098,45132024,45133934	1.000000
lower_leg_skin_female_adult_51_years	chr8	26366349	26366396	26366395	+	RAMPAGE_only	6	6	40	3.292902	4.193943	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	1.000000
lower_leg_skin_female_adult_51_years	chr12	51995909	51995915	51995909	+	RAMPAGE_only	3	3	8	0.658580	3.000000	chr12	51995901	51995996	LINE|L2|L2c	-	chr12	51953379	51997079	ACVR1B|NM_020327.3	+	51953379,51975264,51976326,51980968,51983998,51985191,51986817,51991862,51993984	51953499,51975504,51976575,51981199,51984166,51985348,51986942,51991993,51997079	1.000000
lower_leg_skin_female_adult_51_years	chr2	86482577	86482687	86482577	+	RAMPAGE_only	20	20	85	6.997417	5.168707	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.835294
lower_leg_skin_female_adult_51_years	chr4	69841523	69841533	69841532	-	RAMPAGE_only	3	5	10	0.823225	2.947703	chr4	69841433	69841617	SINE|Alu|AluJo	+	chr4	69821290	69860141	STRG.25846.4	-	69821290,69836368,69838447,69841430,69844160,69847697,69855300,69857499	69822589,69836672,69838572,69842106,69844341,69854314,69855426,69860141	0.500000
lower_leg_skin_female_adult_51_years	chr6	99408405	99408433	99408422	-	RAMPAGE_only	2	3	10	0.823225	2.947703	chr6	99408390	99408561	SINE|MIR|MIRb	-	chr6	99398050	99425277	PNISR|ENST00000647811.1	-	99398050,99402539,99403828,99404602,99406030,99408080,99409172,99410740,99412550,99414571,99415635,99416348,99425214	99401630,99402710,99403882,99404702,99406168,99408271,99409344,99410964,99412739,99414686,99415747,99416428,99425277	0.600000
lower_leg_skin_female_adult_51_years	chr10	26765562	26765585	26765562	-	RAMPAGE_only	4	4	15	1.234838	3.323231	chr10	26765419	26765586	DNA|TcMar-Tigger|MER8	-	chr10	26746595	26823290	STRG.54490.8	-	26746595,26751597,26759061,26765217,26768851,26770244,26771074,26777064,26823137	26748745,26755741,26759238,26765318,26768992,26770345,26771089,26777241,26823290	0.666667
lower_leg_skin_female_adult_51_years	chr3	112119056	112119111	112119110	+	RAMPAGE_only	4	4	11	0.905548	3.121928	chr3	112119102	112119372	SINE|Alu|AluSq2	+	chr3	112086437	112135359	STRG.20845.3	+	112086437,112093359,112102837,112109542,112112963,112116641,112128232	112086545,112093489,112102965,112109613,112113145,112119562,112135359	0.909091
lower_leg_skin_female_adult_51_years	chr12	12927708	12927737	12927733	+	High_confidence	18	18	44	3.622192	5.078639	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.613636
lower_leg_skin_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	517	607	1021	84.051323	5.660277	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.982370
lower_leg_skin_female_adult_51_years	chr9	37603200	37603235	37603230	+	High_confidence	36	40	118	9.714061	6.278192	chr9	37603152	37603302	SINE|MIR|MIR3	+	chr9	37603017	37746967	STRG.50064.1	+	37603017,37623239,37692637,37707415,37708398,37711349,37719068,37724224,37729727,37730983,37732303,37733472,37733729,37735551,37737095,37740077,37744388	37603339,37623320,37692742,37707573,37708501,37711395,37719176,37724320,37729853,37731103,37732440,37733599,37733825,37735734,37737243,37740884,37746967	0.720339
lower_leg_skin_female_adult_51_years	chr14	96077496	96077501	96077500	+	High_confidence	13	18	24	1.975741	4.088779	chr14	96077298	96077697	LTR|ERVL-MaLR|MLT1B	+	chr14	96077510	96092375	STRG.72433.3	+	96077510,96086510	96077629,96092375	0.958333
lower_leg_skin_female_adult_51_years	chr15	73753913	73753924	73753923	-	High_confidence	31	36	102	8.396900	5.777576	chr15	73753800	73754138	LINE|L2|L2c	-	chr15	73753444	73753992	STRG.75402.1	-	73753444	73753992	0.921569
lower_leg_skin_female_adult_51_years	chr17	6853886	6853929	6853886	+	High_confidence	6	6	30	2.469676	4.189898	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853860	6902192	ALOX12P2|ENST00000574727.5	+	6853860,6854213,6892002,6894317,6894883,6895095,6895342,6896315,6896553,6898528,6898799,6899390,6899592,6899867	6854060,6854435,6892075,6894513,6895006,6895199,6895503,6896459,6896763,6898698,6898929,6899490,6899760,6902192	0.700000
lower_leg_skin_female_adult_51_years	chr9	62376790	62376819	62376800	-	High_confidence	9	9	21	1.728774	3.221928	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62350147	62376783	STRG.50641.3	-	62350147,62376497	62350247,62376783	0.714286
lower_leg_skin_female_adult_51_years	chr11	7697152	7697175	7697174	-	High_confidence	8	8	16	1.317161	3.640224	chr11	7697028	7697331	SINE|Alu|AluJo	-	chr11	7696504	7696965	OVCH2|ENST00000534817.1	-	7696504,7696708	7696589,7696965	0.500000
lower_leg_skin_female_adult_51_years	chr18	47920091	47920115	47920091	-	RAMPAGE_only	6	6	13	1.070193	3.085055	chr18	47919993	47920302	LTR|ERVL-MaLR|MLT1A0	-	chr18	47870474	47923642	SMAD2|ENST00000585978.1	-	47870474,47896520,47920071,47922546,47923565	47870564,47896809,47920169,47922655,47923642	1.000000
lower_leg_skin_female_adult_51_years	chr2	177314897	177314917	177314916	-	High_confidence	4	4	8	0.658580	3.000000	chr2	177314867	177315028	DNA|hAT-Charlie|MER5A1	+	chr2	177231804	177314937	NFE2L2|ENST00000586532.5	-	177231804,177232391,177233249,177234004,177310963,177311232,177314916	177232008,177232583,177233339,177234271,177311035,177311328,177314937	0.500000
lower_leg_skin_female_adult_51_years	chr17	76015670	76015709	76015708	-	RAMPAGE_only	6	6	11	0.905548	3.277613	chr17	76015708	76015861	SINE|MIR|MIRb	+	chr17	76007080	76027231	EVPL|ENST00000586740.1	-	76007080,76011575,76011771,76012005,76014425,76014915,76015226,76015449,76017738,76018094,76018445,76018913,76019527,76021467,76021673,76021866,76022188,76022412,76023291,76023499,76024020,76027100	76010543,76011668,76011882,76012089,76014576,76015109,76015365,76015628,76017911,76018258,76018600,76019060,76019653,76021563,76021781,76022028,76022227,76022538,76023418,76023654,76024120,76027231	0.909091
lower_leg_skin_female_adult_51_years	chr16	56740860	56740907	56740905	-	High_confidence	15	24	66	5.433288	5.360767	chr16	56739963	56741004	Retroposon|SVA|SVA_F	-	chr16	56737111	56740893	STRG.78420.1	-	56737111,56740180	56737778,56740893	0.969697
lower_leg_skin_female_adult_51_years	chr16	29963551	29963561	29963560	+	High_confidence	3	5	7	0.576258	2.521641	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963399	29968594	TMEM219|ENST00000569445.2	+	29963399,29968024	29963589,29968594	0.857143
lower_leg_skin_female_adult_51_years	chr16	66992937	66992968	66992967	+	High_confidence	3	3	8	0.658580	2.750000	chr16	66992668	66992985	SINE|Alu|AluSx	-	chr16	66992619	67009314	STRG.78773.3	+	66992619,66995627,67000637,67000856,67001307,67003069,67003255,67003514,67004083,67004792,67006390,67006744,67008973	66993183,66995829,67000779,67000990,67001461,67003174,67003360,67003553,67004224,67005393,67006519,67006817,67009314	1.000000
lower_leg_skin_female_adult_51_years	chr17	60887052	60887083	60887052	+	High_confidence	3	3	9	0.740903	2.947703	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.888889
lower_leg_skin_female_adult_51_years	chr5	150498220	150498221	150498220	+	High_confidence	8	8	11	0.905548	3.121928	chr5	150498149	150498389	SINE|MIR|MIR	+	chr5	150497777	150558211	NDST1|NM_001301063.1	+	150497777,150520867,150527803,150532944,150534866,150535699,150539227,150540081,150541569,150542847,150545311,150549677,150551752,150553212	150497979,150521767,150528298,150533032,150535021,150535885,150539356,150540264,150541666,150542971,150545486,150549787,150551855,150558211	0.909091
lower_leg_skin_female_adult_51_years	chr3	37058793	37058907	37058886	-	RAMPAGE_only	10	12	43	3.539870	4.630413	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.953488
lower_leg_skin_female_adult_51_years	chr7	100037609	100037697	100037696	+	RAMPAGE_only	9	9	45	3.704515	3.891393	chr7	100037735	100038031	SINE|Alu|AluSx3	+	chr7	100023407	100041688	ZKSCAN1|ENST00000620510.1	+	100023407,100023551,100024153,100029860,100030248,100033304	100023461,100023932,100024307,100029952,100030375,100041688	0.955556
lower_leg_skin_female_adult_51_years	chr16	2757814	2757944	2757847	+	High_confidence	12	13	110	9.055480	5.957458	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.918182
lower_leg_skin_female_adult_51_years	chr17	59620048	59620073	59620072	+	High_confidence	6	6	16	1.317161	3.006239	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.937500
lower_leg_skin_female_adult_51_years	chr1	174817537	174817557	174817541	+	RAMPAGE_only	5	5	17	1.399483	3.734522	chr1	174817300	174818587	LINE|L2|L2c	-	chr1	174799931	174995308	RABGAP1L|ENST00000489615.5	+	174799931,174811831,174957456,174969276,174976077,174978806,174982833,174988640,174989848	174800500,174811960,174957549,174969387,174976182,174978890,174982905,174988838,174995308	0.647059
lower_leg_skin_female_adult_51_years	chr9	5050538	5050539	5050538	+	RAMPAGE_only	6	6	7	0.576258	2.584963	chr9	5050308	5050570	SINE|Alu|AluJo	-	chr9	5041692	5128183	JAK2|NM_001322204.1	+	5041692,5044402,5050685,5054562,5055668,5064882,5066677,5069021,5069924,5072491,5073697,5077452,5078305,5080228,5080532,5081724,5089673,5090445,5090738,5123003,5126332,5126683	5041907,5044520,5050831,5054884,5055788,5065040,5066789,5069208,5070052,5072626,5073785,5077580,5078444,5080380,5080683,5081861,5089863,5090570,5090911,5123121,5126446,5128183	0.571429
lower_leg_skin_female_adult_51_years	chr20	18794063	18794086	18794077	+	High_confidence	18	18	63	5.186321	5.048394	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794086	18795870	STRG.90309.1	+	18794086,18794535	18794106,18795870	0.619048
lower_leg_skin_female_adult_51_years	chr4	76234500	76234536	76234526	-	High_confidence	7	7	30	2.469676	4.450212	chr4	76234334	76234657	LTR|ERV1|MER61A	-	chr4	76158759	76234536	SCARB2|ENST00000638295.1	-	76158759,76163224,76166249,76168402,76169866,76174143,76175790,76176436,76179516,76180953,76195706,76234302	76161751,76163383,76166301,76168476,76169985,76174313,76175910,76176528,76179705,76181101,76195864,76234536	0.833333
lower_leg_skin_female_adult_51_years	chr7	100351280	100351314	100351300	+	RAMPAGE_only	3	4	9	0.740903	2.750000	chr7	100351233	100351301	SINE|Alu|FLAM_A	-	chr7	100336124	100351900	STRG.42363.10	+	100336124,100338178,100338772,100345864,100349730,100351251	100336337,100338264,100338889,100345968,100349887,100351900	0.666667
lower_leg_skin_female_adult_51_years	chr5	148094174	148094197	148094196	+	RAMPAGE_only	9	9	33	2.716644	4.453881	chr5	148094012	148094305	SINE|Alu|AluJo	+	chr5	148090927	148101428	SPINK5|ENST00000476608.1	+	148090927,148091164,148094353,148095817,148097866,148099233,148100453,148101354	148091045,148091228,148094481,148095905,148097994,148099315,148100581,148101428	0.727273
lower_leg_skin_female_adult_51_years	chr1	201317278	201317283	201317278	+	RAMPAGE_only	2	2	8	0.658580	2.521641	chr1	201317206	201317435	SINE|MIR|MIRc	-	chr1	201283702	201328836	PKP1|ENST00000352845.3	+	201283702,201293941,201313165,201316552,201317571,201318617,201319815,201320266,201321977,201323012,201324427,201324940,201325753,201328761	201283904,201294045,201313560,201316697,201317779,201318795,201319878,201320381,201322133,201323189,201324581,201325127,201325838,201328836	0.500000
lower_leg_skin_female_adult_51_years	chr6	138416452	138416650	138416524	+	RAMPAGE_only	12	12	97	7.985287	4.056065	chr6	138415370	138417293	LTR|ERVL|ERV3-16A3_I-int	+	chr6	138404246	138422120	STRG.38089.1	+	138404246,138405144,138405970,138412879,138415197	138404597,138405280,138406151,138413154,138422120	0.948454
lower_leg_skin_female_adult_51_years	chr7	132590622	132590623	132590622	-	High_confidence	18	20	24	1.975741	3.886842	chr7	132590316	132590835	LTR|ERVL|MLT2A2	-	chr7	132164267	132590597	STRG.43488.1	-	132164267,132165133,132168303,132174777,132179686,132180585,132181380,132182096,132185298,132187470,132194061,132198484,132202645,132203322,132210942,132223526,132226160,132227450,132228345,132241065,132298090,132489291,132507505,132545218,132590402	132164288,132165200,132168572,132174920,132179921,132180732,132181620,132182190,132185463,132187607,132194179,132198636,132202836,132203419,132211143,132223641,132226260,132227604,132228469,132241166,132298222,132489474,132508779,132545308,132590597	0.916667
lower_leg_skin_female_adult_51_years	chrX	53546444	53546461	53546444	-	RAMPAGE_only	7	7	13	1.070193	3.418296	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.769231
lower_leg_skin_female_adult_51_years	chr1	211548294	211548307	211548306	-	High_confidence	51	51	83	6.832772	5.794830	chr1	211547417	211548345	LINE|L2|L2a	+	chr1	211522337	211548299	STRG.7490.2	-	211522337,211546931,211547967	211522409,211547057,211548299	0.734940
lower_leg_skin_female_adult_51_years	chr2	71024039	71024087	71024039	+	High_confidence	4	4	12	0.987871	3.022055	chr2	71020399	71024471	LTR|ERV1|HERVE-int	+	chr2	71024074	71029931	OR7E91P|NR_002185.3	+	71024074,71024305,71028915	71024200,71024394,71029931	0.666667
lower_leg_skin_female_adult_51_years	chr8	101975324	101975331	101975326	-	High_confidence	22	30	59	4.857030	4.954240	chr8	101975304	101975478	DNA|hAT-Charlie|MER5A	-	chr8	101692865	101975329	NCALD|ENST00000520690.5	-	101692865,101719251,101915808,101975259	101692896,101719648,101915858,101975329	0.745763
lower_leg_skin_female_adult_51_years	chr7	142862017	142862066	142862026	+	High_confidence	4	4	27	2.222709	4.003856	chr7	142861936	142862309	LTR|ERVL-MaLR|MLT1A0	-	chr7	142862034	142871087	EPHB6|ENST00000611578.4	+	142862034,142862755,142863126,142863630,142863965,142864533,142865474,142865959,142866480,142866940,142867607,142867996,142868240,142868491,142868973,142869816,142870213,142870529,142870795	142862133,142862833,142863327,142863695,142864262,142864749,142865630,142866316,142866605,142867068,142867722,142868049,142868360,142868739,142869147,142869966,142870407,142870685,142871087	0.740741
lower_leg_skin_female_adult_51_years	chr2	231072214	231072233	231072218	+	RAMPAGE_only	2	2	8	0.658580	2.521641	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.875000
lower_leg_skin_female_adult_51_years	chr7	100347089	100347140	100347139	+	RAMPAGE_only	3	3	16	1.317161	3.323231	chr7	100346953	100347153	LTR|Gypsy|MamGypLTR1c	-	chr7	100336124	100359008	STRG.42363.2	+	100336124,100338178,100338772,100345864,100351251,100352162,100352563,100353209,100353372,100355142,100356749,100358219,100358689	100336337,100338264,100338889,100349887,100351410,100352478,100353123,100353270,100353483,100355240,100356883,100358366,100359008	0.937500
lower_leg_skin_female_adult_51_years	chr16	66992899	66992900	66992899	+	High_confidence	13	13	14	1.152516	3.238901	chr16	66992668	66992985	SINE|Alu|AluSx	-	chr16	66992619	67009314	STRG.78773.3	+	66992619,66995627,67000637,67000856,67001307,67003069,67003255,67003514,67004083,67004792,67006390,67006744,67008973	66993183,66995829,67000779,67000990,67001461,67003174,67003360,67003553,67004224,67005393,67006519,67006817,67009314	0.928571
lower_leg_skin_female_adult_51_years	chr4	88595577	88595603	88595602	+	RAMPAGE_only	3	3	10	0.823225	2.947703	chr4	88595552	88595664	SINE|MIR|MIR3	+	chr4	88593377	88653088	HERC3|ENST00000452979.5	+	88593377,88595556,88605794,88649839,88652011,88652868	88593494,88595614,88606049,88649999,88652088,88653088	0.900000
lower_leg_skin_female_adult_51_years	chr11	118241603	118241619	118241603	-	RAMPAGE_only	12	12	33	2.716644	4.024652	chr11	118241373	118241624	SINE|MIR|MIR	+	chr11	118229453	118252320	MPZL3|ENST00000446386.2	-	118229453,118233459,118235423,118240210,118252221	118229920,118233523,118235589,118240377,118252320	0.666667
lower_leg_skin_female_adult_51_years	chr19	51069130	51069144	51069130	-	High_confidence	5	5	10	0.823225	2.646439	chr19	51068820	51069173	LINE|L2|L2a	+	chr19	51067016	51069508	STRG.88688.10	-	51067016	51069508	0.600000
lower_leg_skin_female_adult_51_years	chr10	46382398	46382417	46382398	+	RAMPAGE_only	3	3	10	0.823225	2.725481	chr10	46382292	46382527	SINE|MIR|MIR	-	chr10	46375775	46391781	STRG.55112.1	+	46375775,46379884,46381145,46382578,46383455,46384205,46384773,46385379,46385711,46387585,46388392,46390870,46391387	46375872,46379975,46381240,46382692,46383546,46384285,46384833,46385473,46385807,46387644,46388515,46391275,46391781	0.600000
lower_leg_skin_female_adult_51_years	chr10	104059570	104059586	104059570	-	RAMPAGE_only	4	4	12	0.987871	2.913977	chr10	104059418	104059566	DNA|hAT-Charlie|MER5A1	-	chr10	104031285	104080673	COL17A1|ENST00000369733.8	-	104031285,104032673,104032905,104033237,104033944,104034620,104035473,104036491,104037044,104037635,104038405,104039070,104040350,104041064,104041302,104041484,104042419,104043500,104043824,104045757,104046746,104047738,104048068,104049408,104050088,104050620,104050847,104051480,104052154,104053030,104053919,104054091,104054980,104055371,104055781,104056974,104058145,104059637,104060118,104061404,104062257,104063746,104064437,104070425,104072031,104073209,104074183,104076300,104077421,104078541,104080621	104032290,104032754,104032968,104033375,104034334,104034767,104035563,104036632,104037113,104037773,104038528,104039121,104040410,104041118,104041344,104041538,104042455,104043581,104043860,104045793,104046773,104047810,104048104,104049471,104050124,104050656,104050901,104051516,104052217,104053135,104053982,104054118,104055007,104055401,104056003,104057172,104058190,104059718,104060280,104061473,104062329,104063818,104064596,104070569,104072079,104073245,104074231,104076429,104077526,104078586,104080673	0.500000
lower_leg_skin_female_adult_51_years	chr2	40717084	40717085	40717084	+	High_confidence	8	8	11	0.905548	3.321928	chr2	40716955	40717505	LTR|ERVL|MLT2B3	+	chr2	40717142	40732488	STRG.9920.1	+	40717142,40717627,40732197	40717420,40717840,40732488	0.545455
lower_leg_skin_female_adult_51_years	chr8	133255203	133255240	133255239	-	High_confidence	19	21	57	4.692385	4.924567	chr8	133255180	133255391	SINE|MIR|MIRb	+	chr8	133237175	133256228	NDRG1|ENST00000519278.5	-	133237175,133242022,133244354,133246615,133247874,133248714,133250439,133254538	133239119,133242074,133244390,133246663,133247926,133248771,133250543,133256228	0.964912
lower_leg_skin_female_adult_51_years	chr19	17754318	17754335	17754318	+	High_confidence	2	2	11	0.905548	2.721928	chr19	17754300	17754395	SINE|MIR|MIR3	-	chr19	17754217	17762805	FCHO1|ENST00000598960.5	+	17754217,17754591,17755117,17762761	17754466,17754758,17755191,17762805	0.727273
lower_leg_skin_female_adult_51_years	chr10	45000503	45000524	45000503	+	High_confidence	3	3	8	0.658580	3.000000	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
lower_leg_skin_female_adult_51_years	chr20	34546843	34546872	34546843	+	High_confidence	3	3	9	0.740903	2.725481	chr20	34546707	34546884	LTR|ERVL-MaLR|MLT1J	-	chr20	34546853	34560345	MAP1LC3A|ENST00000374837.7	+	34546853,34549904,34559207,34559346,34559735	34546916,34550029,34559263,34559453,34560345	0.555556
lower_leg_skin_female_adult_51_years	chr16	68834430	68834491	68834490	+	RAMPAGE_only	8	8	32	2.634322	4.663910	chr16	68834273	68834516	SINE|Alu|AluJr	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.718750
lower_leg_skin_female_adult_51_years	chr2	53887560	53887561	53887560	-	High_confidence	8	8	9	0.740903	3.000000	chr2	53887554	53887673	LTR|LTR|LTR107_Mam	-	chr2	53864860	53887316	PSME4|ENST00000476586.5	-	53864860,53866084,53866746,53869375,53875626,53885689,53887258	53865573,53866223,53866880,53869538,53875755,53885775,53887316	0.555556
lower_leg_skin_female_adult_51_years	chrX	115647915	115647992	115647991	+	RAMPAGE_only	7	7	59	4.857030	4.547543	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	1.000000
lower_leg_skin_female_adult_51_years	chr8	116648833	116648899	116648844	-	RAMPAGE_only	3	3	21	1.728774	3.821928	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.952381
lower_leg_skin_female_adult_51_years	chr4	86896656	86896681	86896680	-	RAMPAGE_only	5	5	15	1.234838	3.189898	chr4	86896647	86896934	LINE|L2|L2	+	chr4	86888159	86892422	C4orf36|ENST00000504371.1	-	86888159,86890047,86891455,86892198	86888271,86890158,86891593,86892422	0.600000
lower_leg_skin_female_adult_51_years	chr2	109615032	109615068	109615067	+	High_confidence	20	25	39	3.210579	4.650662	chr2	109614998	109615140	LTR|ERV1|MER52D	+	chr2	109614333	109618987	SOWAHC|NM_023016.3	+	109614333	109618987	1.000000
lower_leg_skin_female_adult_51_years	chr3	144379544	144379545	144379544	-	RAMPAGE_only	54	70	73	6.009546	5.098726	chr3	144379302	144379754	LTR|ERVL|MLT2A2	-	chr3	144375469	144376152	STRG.22267.1	-	144375469	144376152	0.589041
lower_leg_skin_female_adult_51_years	chr1	1721636	1721649	1721636	-	High_confidence	4	4	11	0.905548	2.845351	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.818182
lower_leg_skin_female_adult_51_years	chr13	32531969	32532019	32532014	-	RAMPAGE_only	62	69	175	14.406446	6.593455	chr13	32531749	32532214	LTR|ERVL-MaLR|MLT1D	-	chr13	32517874	32536383	STRG.68114.12	-	32517874,32521372,32535768	32518003,32527532,32536383	0.531429
lower_leg_skin_female_adult_51_years	chr2	168577047	168577109	168577047	+	RAMPAGE_only	6	9	49	4.033805	5.038319	chr2	168576807	168577855	LINE|L2|L2a	-	chr2	168456248	168775134	CERS6|NM_203463.2	+	168456248,168547595,168561191,168630984,168691033,168694958,168715000,168717871,168765591,168769509	168456618,168547701,168561322,168631042,168691084,168695051,168715129,168717978,168765748,168775134	0.632653
lower_leg_skin_female_adult_51_years	chr2	200889261	200889318	200889279	-	High_confidence	7	7	30	2.469676	4.307355	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889276	PPIL3|ENST00000465823.5	-	200870955,200876918,200881420,200885697,200887612,200888955	200871521,200877037,200881488,200885772,200887685,200889276	0.733333
lower_leg_skin_female_adult_51_years	chr3	180870516	180870519	180870518	-	High_confidence	4	7	8	0.658580	2.807355	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180707588	180870178	LOC101928882|NR_109986.1	-	180707588,180711192,180711309,180725514,180733478,180734486,180737492,180747879,180748245,180751347,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180733682,180734606,180737814,180748043,180748319,180751410,180782124,180810470,180847624,180870178	0.500000
lower_leg_skin_female_adult_51_years	chr12	123390725	123390762	123390761	+	High_confidence	12	19	33	2.716644	4.131300	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.939394
lower_leg_skin_female_adult_51_years	chr5	32598778	32598779	32598778	+	RAMPAGE_only	8	8	9	0.740903	2.500000	chr5	32598085	32598840	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr5	32594922	32601130	SUB1|ENST00000502453.1	+	32594922,32601004	32599069,32601130	0.666667
lower_leg_skin_female_adult_51_years	chr3	134485443	134485471	134485443	-	High_confidence	2	2	13	1.070193	3.392747	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.538462
lower_leg_skin_female_adult_51_years	chr17	59318761	59318766	59318761	+	RAMPAGE_only	4	4	11	0.905548	2.913977	chr17	59318556	59319065	LTR|ERVL|MLT2A2	+	chr17	59331691	59401734	YPEL2|NM_001005404.3	+	59331691,59353214,59388326,59389359,59397100	59331824,59353526,59388370,59389468,59401734	0.909091
lower_leg_skin_female_adult_51_years	chr19	38327787	38327827	38327787	+	RAMPAGE_only	2	2	8	0.658580	2.500000	chr19	38327771	38327904	SINE|MIR|MIR	+	chr19	38319843	38329014	KCNK6|NM_004823.1	+	38319843,38326592,38327179	38320272,38326988,38329014	1.000000
lower_leg_skin_female_adult_51_years	chr1	54243238	54243254	54243245	-	RAMPAGE_only	2	3	9	0.740903	2.750000	chr1	54243091	54243229	SINE|MIR|MIR3	-	chr1	54226516	54228834	SSBP3|ENST00000528930.5	-	54226516,54228254,54228448,54228747	54227160,54228356,54228477,54228834	0.777778
lower_leg_skin_female_adult_51_years	chr8	27431398	27431412	27431398	+	High_confidence	7	8	12	0.987871	2.918296	chr8	27431334	27431403	LINE|RTE-BovB|MamRTE1	+	chr8	27430898	27452559	PTK2B|ENST00000397497.8	+	27430898,27432259,27433434,27434092,27434512,27435742,27436250,27437121,27437395,27437764,27439030,27439308,27440236,27442874,27444205,27450748,27451042,27451484	27431472,27432361,27433552,27434132,27434559,27435793,27436348,27437206,27437496,27437880,27439131,27439398,27440441,27442983,27444271,27450895,27451078,27452559	1.000000
lower_leg_skin_female_adult_51_years	chr7	6590257	6590320	6590278	+	High_confidence	6	6	36	2.963612	4.160705	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.888889
lower_leg_skin_female_adult_51_years	chr11	64807587	64807621	64807587	-	RAMPAGE_only	3	3	11	0.905548	2.846439	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64804374	64806368	MEN1|ENST00000478548.1	-	64804374,64805033,64805634	64804816,64805198,64806368	0.636364
lower_leg_skin_female_adult_51_years	chr11	3477067	3477087	3477072	-	High_confidence	22	27	108	8.890835	5.918542	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3476101	3477329	STRG.58440.1	-	3476101,3476942	3476373,3477329	0.675926
lower_leg_skin_female_adult_51_years	chr18	63567998	63568117	63568062	+	RAMPAGE_only	11	11	70	5.762578	4.983843	chr18	63568096	63568401	SINE|Alu|AluJo	+	chr18	63556159	63569327	SERPINB12|NM_080474.2	+	63556159,63558351,63559577,63561084,63563977,63565444,63566606	63556327,63558426,63559718,63561202,63564120,63565612,63569327	1.000000
lower_leg_skin_female_adult_51_years	chr5	71896628	71896629	71896628	+	RAMPAGE_only	13	13	14	1.152516	3.392747	chr5	71896432	71896813	LTR|ERVL|MLT2A1	+	chr5	71916466	71916845	STRG.30226.1	+	71916466	71916845	0.500000
lower_leg_skin_female_adult_51_years	chr11	65439081	65439580	65439579	+	RAMPAGE_only	69	71	516	42.478436	7.101076	chr11	65439400	65439684	SINE|Alu|AluSz6	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998062
lower_leg_skin_female_adult_51_years	chr12	12110981	12110986	12110981	+	High_confidence	30	37	48	3.951482	4.306128	chr12	12110866	12110982	SINE|Alu|AluJb	+	chr12	12111162	12111489	AC007537.1|ENST00000539347.1	+	12111162	12111489	0.875000
lower_leg_skin_female_adult_51_years	chr3	50312867	50312934	50312867	-	High_confidence	6	6	30	2.469676	3.919903	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50302748	50312860	STRG.18929.4	-	50302748,50303787,50309658,50312303	50302980,50303953,50309777,50312860	0.900000
lower_leg_skin_female_adult_51_years	chr11	102397698	102397770	102397769	-	RAMPAGE_only	5	5	19	1.564128	3.471354	chr11	102397661	102397799	DNA|hAT-Charlie|Charlie16a	-	chr11	102396331	102452839	TMEM123|ENST00000361236.7	-	102396331,102401538,102401915,102452523	102398891,102401692,102402206,102452839	1.000000
lower_leg_skin_female_adult_51_years	chr19	282755	282778	282777	-	RAMPAGE_only	6	8	20	1.646451	3.366091	chr19	282643	282733	SINE|MIR|MIR1_Amn	-	chr19	281045	288537	PLPP2|ENST00000621795.1	-	281045,282133,282751	281537,282310,288537	0.950000
lower_leg_skin_female_adult_51_years	chr19	35115922	35115946	35115945	+	High_confidence	4	4	15	1.234838	3.093069	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115940	35123657	FXYD3|ENST00000603181.5	+	35115940,35116263,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35116040,35116359,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35123657	0.666667
lower_leg_skin_female_adult_51_years	chrX	48589981	48590007	48590006	+	High_confidence	3	3	10	0.823225	3.121928	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48590041	48599682	STRG.96412.4	+	48590041,48597957,48598716,48599352,48599586	48590287,48598037,48598957,48599462,48599682	0.800000
lower_leg_skin_female_adult_51_years	chr7	128622497	128622529	128622497	+	RAMPAGE_only	5	6	13	1.070193	3.418296	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128623557	128661047	STRG.43357.6	+	128623557,128625796,128626294,128629393,128631679,128638773,128640884,128642216,128648791,128651037,128651188	128623781,128625855,128626530,128629458,128631869,128638897,128641379,128642281,128648982,128651095,128661047	0.615385
lower_leg_skin_female_adult_51_years	chr20	45111034	45111035	45111034	-	RAMPAGE_only	10	11	11	0.905548	2.921928	chr20	45111005	45111457	LINE|L2|L2b	+	chr20	45109451	45115162	STRG.91148.4	-	45109451,45110399,45110634	45110013,45110540,45115162	0.909091
lower_leg_skin_female_adult_51_years	chr15	34988764	34988814	34988764	-	High_confidence	2	2	12	0.987871	3.418296	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.583333
lower_leg_skin_female_adult_51_years	chr2	232816700	232816766	232816731	+	RAMPAGE_only	4	4	22	1.811096	3.916127	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.909091
lower_leg_skin_female_adult_51_years	chr11	8138593	8138594	8138593	-	High_confidence	16	16	21	1.728774	3.576618	chr11	8138547	8139126	LTR|ERV1|LTR10C	+	chr11	8110243	8138559	RIC3|ENST00000524799.5	-	8110243,8110658,8126658,8137377,8138271	8110407,8111137,8126804,8137471,8138559	0.857143
lower_leg_skin_female_adult_51_years	chr5	32403108	32403116	32403115	-	RAMPAGE_only	4	4	8	0.658580	2.521641	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.875000
lower_leg_skin_female_adult_51_years	chr6	137045307	137045308	137045307	-	High_confidence	8	8	9	0.740903	2.500000	chr6	137045242	137045773	DNA|TcMar-Tigger|Tigger3b	-	chr6	136999970	137045180	IL20RA|NM_001278724.1	-	136999970,137004620,137008598,137009316,137016967,137044640	137002355,137004760,137008743,137009426,137017103,137045180	0.555556
lower_leg_skin_female_adult_51_years	chr4	102431247	102431248	102431247	-	High_confidence	9	10	14	1.152516	3.026987	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.928571
lower_leg_skin_female_adult_51_years	chr13	46097228	46097239	46097238	+	RAMPAGE_only	3	3	8	0.658580	2.521641	chr13	46096795	46098485	LTR|ERVL|ERV3-16A3_I-int	+	chr13	46052901	46113332	CPB2-AS1|ENST00000415033.2	+	46052901,46094852,46098397,46113183	46052965,46095002,46098781,46113332	0.500000
lower_leg_skin_female_adult_51_years	chr1	61856235	61856236	61856235	+	RAMPAGE_only	6	6	8	0.658580	2.750000	chr1	61856274	61856495	SINE|MIR|MIR	+	chr1	61805509	62163504	PATJ|ENST00000484937.5	+	61805509,61808473,61822944,61827421,61833653,61856029,61861550,61864237,61875242,61884236,61899582,61901281,61908371,61914586,61927729,61990167,62017855,62037976,62050965,62079449,62084514,62108436,62114052,62116531,62117131,62121185,62123020,62127971,62128840,62148283,62153357,62160907,62162882	61805524,61808530,61823079,61827583,61833785,61856239,61861667,61864633,61875366,61884408,61899654,61901459,61908482,61914664,61927829,61990364,62017947,62038049,62051058,62079567,62084648,62108520,62114246,62116679,62117218,62121295,62123058,62128094,62128945,62148390,62153481,62161389,62163504	1.000000
lower_leg_skin_female_adult_51_years	chr11	65434217	65434589	65434285	+	RAMPAGE_only	20	20	387	31.858827	7.052968	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.997416
lower_leg_skin_female_adult_51_years	chr5	133124308	133124329	133124308	-	RAMPAGE_only	2	2	12	0.987871	3.277613	chr5	133124115	133124701	LTR|ERVL|MLT2B3	-	chr5	133111054	133114475	AC113410.2|ENST00000507389.1	-	133111054,133114258	133111515,133114475	0.833333
lower_leg_skin_female_adult_51_years	chr15	42147837	42147846	42147837	-	High_confidence	7	7	14	1.152516	2.985228	chr15	42147814	42147909	SINE|MIR|MIR	-	chr15	42146674	42147733	PLA2G4F|ENST00000561893.1	-	42146674,42147625	42147346,42147733	0.785714
lower_leg_skin_female_adult_51_years	chr5	73286424	73286446	73286445	+	RAMPAGE_only	6	8	16	1.317161	3.750000	chr5	73286219	73286628	LTR|ERVL|MLT2B1	+	chr5	73213953	73294930	AC116345.1|ENST00000513379.1	+	73213953,73286486,73287616,73288566,73294559	73214281,73286599,73287682,73288629,73294930	0.625000
lower_leg_skin_female_adult_51_years	chr5	151669675	151669719	151669675	-	RAMPAGE_only	4	4	13	1.070193	3.392747	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	1.000000
lower_leg_skin_female_adult_51_years	chr7	64897942	64897943	64897942	+	RAMPAGE_only	10	10	14	1.152516	3.039149	chr7	64897708	64898026	SINE|Alu|AluY	-	chr7	64903241	64931577	ZNF273|NR_003099.1	+	64903241,64917029,64917580,64918196,64927653	64903419,64917118,64917707,64918292,64931577	1.000000
lower_leg_skin_female_adult_51_years	chr4	14993367	14993404	14993391	-	RAMPAGE_only	3	3	10	0.823225	2.921928	chr4	14993276	14993454	LINE|RTE-BovB|MamRTE1	-	chr4	14470464	14888169	LINC00504|NR_126435.1	-	14470464,14477346,14572146,14614279,14700742,14859542,14888058	14474563,14477458,14572246,14614416,14700781,14859616,14888169	0.500000
lower_leg_skin_female_adult_51_years	chr16	2759780	2759816	2759787	+	High_confidence	5	8	20	1.646451	3.108695	chr16	2759705	2759830	LINE|L2|L2c	-	chr16	2759746	2761810	SRRM2|ENST00000572278.1	+	2759746,2760300,2761560	2760008,2760499,2761810	1.000000
lower_leg_skin_female_adult_51_years	chr18	23576899	23576948	23576944	-	High_confidence	6	6	27	2.222709	4.004344	chr18	23576532	23578195	LTR|ERV1|LTR12C	-	chr18	23573451	23576947	NPC1|ENST00000587223.1	-	23573451,23576480	23573574,23576947	0.962963
lower_leg_skin_female_adult_51_years	chr12	102108242	102108249	102108242	+	RAMPAGE_only	5	5	16	1.317161	3.506891	chr12	102108033	102108604	LTR|ERVL|MLT2B3	+	chr12	102120170	102197520	PARPBP|NM_001319993.1	+	102120170,102123885,102137136,102148229,102153868,102164437,102165728,102175482,102178591,102182548,102195311,102195950	102120286,102124041,102137244,102148463,102153976,102164608,102165883,102175666,102178770,102182627,102195447,102197520	0.500000
lower_leg_skin_female_adult_51_years	chr20	62367003	62367004	62367003	-	High_confidence	7	7	11	0.905548	3.095795	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.909091
lower_leg_skin_female_adult_51_years	chr6	77369106	77369167	77369166	-	RAMPAGE_only	14	16	60	4.939353	5.315175	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77151828	77350715	STRG.36259.1	-	77151828,77271339,77273026,77350621	77151974,77271493,77273307,77350715	0.600000
lower_leg_skin_female_adult_51_years	chr17	38810332	38810333	38810332	-	High_confidence	18	19	24	1.975741	3.720176	chr17	38810300	38810417	LINE|L2|L2b	+	chr17	38800663	38810595	STRG.81510.6	-	38800663,38802699,38806296,38806764,38809701,38810275	38802206,38802861,38806395,38806976,38809765,38810595	1.000000
lower_leg_skin_female_adult_51_years	chr9	72363564	72363596	72363564	-	RAMPAGE_only	2	2	8	0.658580	2.521641	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364976	STRG.51031.5	-	72354457,72356930,72359417,72360109,72364695	72356101,72357056,72359521,72363606,72364976	0.875000
lower_leg_skin_female_adult_51_years	chr6	36505073	36505118	36505090	-	RAMPAGE_only	5	6	22	1.811096	3.913977	chr6	36505057	36505226	DNA|hAT-Charlie|MER5B	+	chr6	36493891	36547470	STK38|ENST00000229812.7	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540207,36547470	0.681818
lower_leg_skin_female_adult_51_years	chr1	209567822	209567856	209567822	-	High_confidence	7	8	25	2.058064	3.936180	chr1	209567578	209567919	LTR|ERVL-MaLR|MLT1I	-	chr1	209539749	209567865	STRG.7408.4	-	209539749,209541307,209566911,209567535	209540788,209541429,209566987,209567865	0.600000
lower_leg_skin_female_adult_51_years	chr6	140898419	140898427	140898426	-	High_confidence	3	3	7	0.576258	2.807355	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140575787	140898381	AL035446.2|ENST00000650553.1	-	140575787,140620907,140651477,140816131,140898187	140576557,140620995,140651561,140816230,140898381	1.000000
lower_leg_skin_female_adult_51_years	chr4	8436023	8436026	8436025	-	High_confidence	12	23	28	2.305031	4.521641	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8415594	8436142	STRG.24462.8	-	8415594,8416377,8435922	8415999,8416535,8436142	0.571429
lower_leg_skin_female_adult_51_years	chr12	883791	883830	883829	+	RAMPAGE_only	10	16	47	3.869160	4.995766	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	752922	911451	WNK1|ENST00000530271.6	+	752922,813641,827041,830002,857160,859244,861012,862082,867865,871264,878211,879572,880720,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,901560,904452,907846,908474	754324,813814,827262,830160,857249,859464,861343,862270,869104,871348,878361,880031,880999,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,901632,904494,908034,911451	1.000000
lower_leg_skin_female_adult_51_years	chrX	7147287	7147288	7147287	+	High_confidence	11	11	12	0.987871	3.095795	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.916667
lower_leg_skin_female_adult_51_years	chr11	72824423	72824438	72824437	+	High_confidence	7	9	17	1.399483	2.952820	chr11	72824377	72824488	SINE|MIR|MIRc	-	chr11	72823894	72843428	STRG.60829.8	+	72823894,72825301,72826172,72826517,72826702,72827187,72828358,72828728,72828882,72842616	72824842,72825407,72826243,72826589,72826823,72827293,72828508,72828776,72828984,72843428	0.823529
lower_leg_skin_female_adult_51_years	chr21	33931375	33931418	33931417	+	High_confidence	8	8	20	1.646451	3.471354	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931213	33971186	LINC00649|ENST00000400353.6	+	33931213,33945809,33969236	33931267,33945895,33971186	0.500000
lower_leg_skin_female_adult_51_years	chr17	4187108	4187109	4187108	-	High_confidence	4	4	7	0.576258	2.807355	chr17	4187012	4187196	LINE|L1|L1PB2	-	chr17	4183525	4187109	ANKFY1|ENST00000574736.1	-	4183525,4183811,4184817,4186893	4183551,4183910,4185046,4187109	0.857143
lower_leg_skin_female_adult_51_years	chr8	18063186	18063198	18063197	-	High_confidence	5	5	12	0.987871	3.418296	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
lower_leg_skin_female_adult_51_years	chr17	11944829	11944830	11944829	+	RAMPAGE_only	7	7	8	0.658580	2.521641	chr17	11944747	11944849	DNA|hAT-Charlie|MER5A	+	chr17	11882903	11969748	DNAH9|ENST00000396001.6	+	11882903,11883585,11886824,11891776,11894373,11902718,11905660,11923813,11929865,11932013,11933879,11937351,11942302,11961866,11969299	11883172,11883750,11886965,11891947,11894496,11902912,11905809,11923941,11930093,11932205,11934071,11937522,11942485,11962256,11969748	0.500000
lower_leg_skin_female_adult_51_years	chr2	201122595	201122596	201122595	+	High_confidence	4	5	6	0.493935	2.584963	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201122476	201130053	CFLAR|ENST00000425030.1	+	201122476,201129728	201122747,201130053	0.500000
lower_leg_skin_female_adult_51_years	chr13	23834309	23834323	23834322	-	RAMPAGE_only	6	7	14	1.152516	3.180833	chr13	23834262	23834584	LINE|L2|L2b	+	chr13	23730188	23889419	MIPEP|ENST00000382172.3	-	23730188,23756544,23760095,23805949,23809849,23836239,23837551,23839648,23841334,23858859,23862301,23864140,23869291,23870012,23874845,23879267,23881698,23886332,23889131	23730445,23756618,23760217,23806069,23809924,23836349,23837756,23839726,23841488,23858912,23862362,23864189,23869448,23870195,23874909,23879354,23881787,23886506,23889419	0.714286
lower_leg_skin_female_adult_51_years	chr17	61952964	61952982	61952964	-	RAMPAGE_only	3	3	8	0.658580	2.500000	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	1.000000
lower_leg_skin_female_adult_51_years	chr5	152838463	152838474	152838463	+	High_confidence	3	3	8	0.658580	2.521641	chr5	152838206	152839158	LTR|ERV1|LTR1D	-	chr5	152838507	152859967	STRG.33008.1	+	152838507,152859791	152838832,152859967	0.500000
lower_leg_skin_female_adult_51_years	chrX	53576948	53576966	53576948	-	RAMPAGE_only	3	3	10	0.823225	3.169925	chrX	53576946	53576998	LTR|ERV1|LTR43-int	+	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.900000
lower_leg_skin_female_adult_51_years	chr11	58578070	58578113	58578102	-	High_confidence	17	18	33	2.716644	4.415458	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.939394
lower_leg_skin_female_adult_51_years	chr2	86695152	86695168	86695152	-	RAMPAGE_only	3	3	8	0.658580	2.750000	chr2	86695006	86695595	LTR|ERV1|LTR10A	+	chr2	86503429	86721122	RNF103-CHMP3|NM_001198954.1	-	86503429,86507478,86510357,86529217,86542251,86620329,86688231,86720981	86505949,86507593,86510479,86529397,86542312,86620469,86688325,86721122	0.500000
lower_leg_skin_female_adult_51_years	chr11	57793766	57793803	57793766	+	RAMPAGE_only	2	2	11	0.905548	3.459432	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57784257	57802124	STRG.59972.13	+	57784257,57794009,57795576,57796456,57801732	57791673,57794081,57795729,57796992,57802124	0.636364
lower_leg_skin_female_adult_51_years	chr19	35115804	35115845	35115834	+	High_confidence	12	12	81	6.668127	5.554382	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.790123
lower_leg_skin_female_adult_51_years	chr19	53865338	53865360	53865345	+	High_confidence	3	5	10	0.823225	2.641604	chr19	53865313	53865624	SINE|Alu|AluSx	-	chr19	53865583	53876435	MYADM|NM_001290193.1	+	53865583,53869753,53873527	53865728,53869838,53876435	0.700000
lower_leg_skin_female_adult_51_years	chr5	177431696	177431721	177431720	+	High_confidence	2	3	7	0.576258	2.584963	chr5	177431745	177431876	SINE|MIR|MIRb	+	chr5	177431710	177442064	GRK6|ENST00000515666.5	+	177431710,177432232,177432705,177433146,177433346,177433535,177433913,177434901,177435031,177436072,177436392,177440699,177440918,177441736	177432107,177432310,177432806,177433239,177433410,177433676,177434104,177434939,177435121,177436281,177436530,177440837,177441053,177442064	0.857143
lower_leg_skin_female_adult_51_years	chr17	2975621	2975667	2975660	+	RAMPAGE_only	5	11	33	2.716644	4.536670	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2963922	3036585	STRG.79927.1	+	2963922,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3036585	0.878788
lower_leg_skin_female_adult_51_years	chr1	2394657	2394658	2394657	+	High_confidence	5	6	7	0.576258	2.521641	chr1	2394634	2394777	SINE|MIR|MIRb	-	chr1	2394004	2403216	RER1|ENST00000488353.2	+	2394004,2397115,2399414,2400856,2402206,2403034	2395871,2397220,2399514,2400935,2402342,2403216	1.000000
lower_leg_skin_female_adult_51_years	chr14	51589970	51590000	51589996	+	RAMPAGE_only	62	87	194	15.970575	5.811737	chr14	51589786	51590085	SINE|Alu|AluSq	+	chr14	51651857	51730727	FRMD6|NM_001267046.1	+	51651857,51689690,51698141,51701055,51702511,51704748,51708077,51711530,51712482,51715324,51720054,51721948,51725778,51727744	51651996,51689935,51698232,51701159,51702588,51704935,51708233,51711596,51712551,51715499,51720390,51722080,51725870,51730727	0.634021
lower_leg_skin_female_adult_51_years	chr3	11225985	11226026	11226025	+	High_confidence	9	9	55	4.527740	5.281182	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.509091
lower_leg_skin_female_adult_51_years	chr5	133124484	133124485	133124484	-	RAMPAGE_only	315	318	404	33.258310	5.006404	chr5	133124115	133124701	LTR|ERVL|MLT2B3	-	chr5	133111054	133114475	AC113410.2|ENST00000507389.1	-	133111054,133114258	133111515,133114475	0.962871
lower_leg_skin_female_adult_51_years	chr8	143281669	143281687	143281686	-	High_confidence	22	24	62	5.103998	5.099042	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281690	MINCR|ENST00000518073.1	-	143280827,143281481	143280997,143281690	0.548387
lower_leg_skin_female_adult_51_years	chr10	102368750	102368794	102368793	+	RAMPAGE_only	3	3	9	0.740903	2.503258	chr10	102368824	102368910	SINE|MIR|MIRc	+	chr10	102332424	102382721	STRG.57055.3	+	102332424,102344050,102351255,102351842,102352457,102353599,102358038,102358505,102359269,102360183,102361021,102361717,102362474,102363255,102363709,102365396,102366382,102367084,102367477,102368217,102368738,102369210,102369710,102369860,102370173,102370383,102370706,102375358,102376271,102376559,102376934,102379283,102379520,102381126,102382055	102332526,102344182,102351374,102351951,102352518,102353654,102358186,102358729,102359435,102360395,102361120,102361912,102362664,102363396,102363798,102365599,102366506,102367210,102367560,102368454,102368832,102369387,102369775,102369984,102370245,102370478,102370860,102375584,102376432,102376800,102377140,102379434,102380686,102381255,102382721	1.000000
lower_leg_skin_female_adult_51_years	chr11	13419729	13419730	13419729	-	RAMPAGE_only	4	4	7	0.576258	2.584963	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.857143
lower_leg_skin_female_adult_51_years	chr8	80485592	80485605	80485592	+	High_confidence	11	11	20	1.646451	3.303702	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.500000
lower_leg_skin_female_adult_51_years	chr16	58421322	58421323	58421322	+	High_confidence	10	10	10	0.823225	3.321928	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421325	58436169	LINC02137|ENST00000562322.1	+	58421325,58435691	58421385,58436169	0.600000
lower_leg_skin_female_adult_51_years	chr10	27509885	27509918	27509917	+	RAMPAGE_only	2	3	6	0.493935	2.584963	chr10	27509948	27510212	LINE|L2|L2c	+	chr10	27504618	27537966	RAB18|ENST00000423465.1	+	27504618,27504978,27509874,27526827,27531528,27532506,27533734,27533927,27537875	27504724,27505190,27509930,27526889,27531615,27532579,27533853,27533994,27537966	0.666667
lower_leg_skin_female_adult_51_years	chr10	103605822	103605825	103605822	-	RAMPAGE_only	3	4	9	0.740903	2.725481	chr10	103605815	103605885	LINE|CR1|L3	+	chr10	103585138	103618053	STRG.57132.3	-	103585138,103588868,103601756,103605797,103611580,103612852,103617196	103585333,103588939,103603789,103605917,103611630,103613190,103618053	1.000000
lower_leg_skin_female_adult_51_years	chr5	109383420	109383465	109383446	-	High_confidence	4	4	22	1.811096	3.546439	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.909091
lower_leg_skin_female_adult_51_years	chr7	134527596	134527597	134527596	+	High_confidence	37	38	50	4.116127	4.855389	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.940000
lower_leg_skin_female_adult_51_years	chr10	60657169	60657180	60657169	-	RAMPAGE_only	6	6	16	1.317161	3.500000	chr10	60656961	60657332	LTR|ERVL-MaLR|THE1B	-	chr10	60507500	60733324	ANK3|ENST00000510382.1	-	60507500,60615185,60733262	60508625,60615224,60733324	0.500000
lower_leg_skin_female_adult_51_years	chr20	44499115	44499172	44499115	-	RAMPAGE_only	4	4	34	2.798967	4.601410	chr20	44498888	44499217	LINE|L2|L2b	+	chr20	44497430	44514311	STRG.91115.3	-	44497430,44501072,44503814,44504800,44506826,44509890,44511288,44512800,44513340	44500434,44502581,44503995,44504891,44506996,44510028,44511368,44512994,44514311	0.941176
lower_leg_skin_female_adult_51_years	chr16	10531703	10531710	10531703	-	RAMPAGE_only	3	4	7	0.576258	2.584963	chr16	10531651	10531724	LINE|L2|L2c	+	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.857143
lower_leg_skin_female_adult_51_years	chr5	141646365	141646366	141646365	-	High_confidence	9	11	14	1.152516	2.777363	chr5	141646242	141646475	SINE|MIR|MIR	-	chr5	141644629	141646364	FCHSD1|ENST00000518499.1	-	141644629,141644858,141645019,141645770,141646086	141644690,141644942,141645148,141645932,141646364	0.785714
lower_leg_skin_female_adult_51_years	chr5	176411456	176411459	176411458	-	RAMPAGE_only	1198	1459	2066	170.078388	7.131882	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.852856
lower_leg_skin_female_adult_51_years	chr19	52291436	52291457	52291436	+	RAMPAGE_only	3	3	9	0.740903	3.169925	chr19	52291476	52291776	SINE|Alu|AluSx3	+	chr19	52269570	52292723	ZNF766|NM_001010851.2	+	52269570,52282110,52283284,52290065	52269631,52282237,52283413,52292723	1.000000
lower_leg_skin_female_adult_51_years	chr12	46367595	46367607	46367606	-	High_confidence	6	7	14	1.152516	3.378783	chr12	46367602	46367794	SINE|MIR|MIRc	+	chr12	46364441	46367410	SLC38A2|ENST00000548870.5	-	46364441,46364643,46365106,46366863,46367075,46367266	46364556,46364702,46365189,46366945,46367168,46367410	0.785714
lower_leg_skin_female_adult_51_years	chr10	52455277	52455315	52455277	-	High_confidence	2	2	14	1.152516	3.238901	chr10	52454703	52455679	LINE|L2|L2a	+	chr10	52450873	52455272	LNCAROD|ENST00000435813.6	-	52450873,52454585,52455105	52451517,52454749,52455272	0.857143
lower_leg_skin_female_adult_51_years	chr19	55079807	55079851	55079850	+	High_confidence	3	3	9	0.740903	3.169925	chr19	55079869	55080047	SINE|MIR|MIRc	+	chr19	55080391	55087923	EPS8L1|NM_017729.3	+	55080391,55080771,55081230,55081772,55082091,55082274,55082453,55083377,55083615,55085840,55086060,55086391,55086713,55087302,55087527	55080541,55080854,55081492,55081899,55082180,55082349,55082602,55083519,55083644,55085973,55086192,55086518,55086888,55087435,55087923	0.777778
lower_leg_skin_female_adult_51_years	chr20	34534461	34534492	34534491	+	RAMPAGE_only	13	14	47	3.869160	4.290322	chr20	34534306	34534522	SINE|MIR|MIRb	+	chr20	34516454	34540958	DYNLRB1|ENST00000374846.3	+	34516454,34526267,34534627,34540580	34516876,34526343,34534795,34540958	0.957447
lower_leg_skin_female_adult_51_years	chr19	39198244	39198249	39198244	+	RAMPAGE_only	6	7	17	1.399483	3.572469	chr19	39198261	39198457	SINE|MIR|MIRb	+	chr19	39196963	39201882	NCCRP1|NM_001001414.1	+	39196963,39198052,39198201,39199169,39200345,39200615	39197319,39198115,39198253,39199265,39200484,39201882	0.823529
lower_leg_skin_female_adult_51_years	chr6	89656086	89656087	89656086	-	RAMPAGE_only	7	8	8	0.658580	2.807355	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89653924	89657295	STRG.36731.6	-	89653924,89654163,89655763	89654002,89654334,89657295	0.875000
lower_leg_skin_female_adult_51_years	chr20	45801457	45801458	45801457	+	RAMPAGE_only	4	4	6	0.493935	2.584963	chr20	45801505	45801795	SINE|Alu|AluJo	+	chr20	45793964	45811427	DNTTIP1|ENST00000435014.1	+	45793964,45795344,45801073,45801401,45801998,45803332,45805145,45805305,45810884,45811056	45794017,45795443,45801142,45801458,45802057,45803378,45805204,45805366,45810940,45811427	1.000000
lower_leg_skin_female_adult_51_years	chr1	34754798	34754802	34754798	+	High_confidence	4	4	9	0.740903	2.947703	chr1	34754671	34754841	SINE|MIR|MIR	-	chr1	34755046	34758512	GJB5|NM_005268.3	+	34755046,34757306	34755195,34758512	0.777778
lower_leg_skin_female_adult_51_years	chr11	112150596	112150622	112150596	-	High_confidence	3	3	9	0.740903	3.000000	chr11	112150354	112150650	LINE|L2|L2c	+	chr11	112143256	112151073	IL18|ENST00000525547.5	-	112143256,112148602,112150071	112143817,112148736,112151073	0.888889
lower_leg_skin_female_adult_51_years	chr15	41285275	41285331	41285330	+	RAMPAGE_only	3	3	12	0.987871	3.251629	chr15	41285320	41285686	LTR|ERV1|LTR7	-	chr15	41284004	41306534	OIP5-AS1|ENST00000500949.6	+	41284004,41285224,41286010,41298040	41284110,41285363,41286100,41306534	1.000000
lower_leg_skin_female_adult_51_years	chr17	17882961	17883019	17883018	-	RAMPAGE_only	7	9	27	2.222709	3.880456	chr17	17882996	17883086	SINE|MIR|MIRc	+	chr17	17868964	17972397	TOM1L2|ENST00000537091.2	-	17868964,17879626,17882704,17884633,17898595,17907446,17972261	17869473,17879743,17882863,17884768,17898674,17907531,17972397	0.888889
lower_leg_skin_female_adult_51_years	chr9	20658312	20658349	20658346	+	High_confidence	5	6	20	1.646451	2.560964	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658340	20694520	STRG.49395.1	+	20658340,20694519	20658826,20694520	0.700000
lower_leg_skin_female_adult_51_years	chr8	12530940	12530941	12530940	+	RAMPAGE_only	5	5	7	0.576258	2.521641	chr8	12530906	12531004	LINE|L2|L2b	+	chr8	12564259	12567033	STRG.44994.5	+	12564259	12567033	1.000000
lower_leg_skin_female_adult_51_years	chr13	45206631	45206634	45206631	+	High_confidence	21	21	40	3.292902	3.955152	chr13	45206646	45206717	SINE|MIR|MIRb	+	chr13	45206354	45267333	GTF2F2|ENST00000494087.5	+	45206354,45252870,45267232	45207505,45252970,45267333	0.900000
lower_leg_skin_female_adult_51_years	chr10	34973954	34973991	34973954	+	High_confidence	14	14	56	4.610063	5.083823	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34973963	34975608	STRG.54746.3	+	34973963	34975608	0.982143
lower_leg_skin_female_adult_51_years	chr14	34536100	34536110	34536100	-	High_confidence	11	11	25	2.058064	4.229871	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.760000
lower_leg_skin_female_adult_51_years	chr3	57907996	57907997	57907996	+	RAMPAGE_only	7	7	9	0.740903	2.725481	chr3	57908044	57908279	SINE|MIR|MIRc	+	chr3	57912294	57916971	SLMAP|ENST00000476471.1	+	57912294,57913157,57916905	57912701,57913275,57916971	1.000000
lower_leg_skin_female_adult_51_years	chr4	88750982	88750994	88750993	-	RAMPAGE_only	3	4	7	0.576258	2.521641	chr4	88750976	88751269	SINE|Alu|AluSx1	+	chr4	88750445	88759166	FAM13A|ENST00000515155.1	-	88750445,88758753	88750608,88759166	0.571429
lower_leg_skin_female_adult_51_years	chr18	9221566	9221578	9221566	+	RAMPAGE_only	12	14	21	1.728774	3.576618	chr18	9221463	9221567	LINE|L2|L2a	+	chr18	9216779	9256111	ANKRD12|ENST00000359158.7	+	9216779,9221851,9239476,9254210	9216900,9221999,9239556,9256111	0.523810
lower_leg_skin_female_adult_51_years	chr18	63587309	63587346	63587345	+	High_confidence	8	8	26	2.140386	4.323856	chr18	63587176	63587346	DNA|hAT-Charlie|MER5B	-	chr18	63587365	63599199	SERPINB13|ENST00000344731.9	+	63587365,63588650,63589655,63592347,63592853,63594354,63595028,63596958	63587450,63588832,63589715,63592476,63592971,63594497,63595184,63599199	0.923077
lower_leg_skin_female_adult_51_years	chr12	14706838	14706839	14706838	+	High_confidence	5	6	8	0.658580	2.500000	chr12	14706508	14707072	LTR|ERV1|HERVH-int	-	chr12	14707019	14707386	STRG.63688.1	+	14707019	14707386	0.500000
lower_leg_skin_female_adult_51_years	chr3	46674995	46675010	46674995	-	RAMPAGE_only	2	3	9	0.740903	2.725481	chr3	46674914	46675083	SINE|MIR|MIRc	-	chr3	46668996	46677455	ALS2CL|ENST00000486301.5	-	46668996,46671487,46671883,46672139,46673338,46674565,46676244,46676641,46677394	46671064,46671584,46672033,46672201,46673381,46675976,46676402,46677022,46677455	0.888889
lower_leg_skin_female_adult_51_years	chr14	102947722	102947727	102947722	-	RAMPAGE_only	3	3	7	0.576258	2.584963	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.571429
lower_leg_skin_female_adult_51_years	chr12	109851925	109852151	109851925	-	RAMPAGE_only	121	121	375	30.870956	6.694104	chr12	109851848	109852148	SINE|Alu|AluSq2	-	chr12	109850942	109880488	GLTP|NM_016433.3	-	109850942,109855618,109857525,109858682,109880271	109852737,109855769,109857659,109858741,109880488	0.994667
lower_leg_skin_female_adult_51_years	chr19	3062922	3062983	3062922	-	High_confidence	10	11	31	2.551999	4.164735	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.967742
lower_leg_skin_female_adult_51_years	chr2	171414675	171414676	171414675	-	RAMPAGE_only	10	11	11	0.905548	2.846439	chr2	171414444	171414743	SINE|Alu|AluJb	+	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.636364
lower_leg_skin_female_adult_51_years	chr3	33838213	33838269	33838246	+	RAMPAGE_only	6	6	24	1.975741	4.004886	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.833333
lower_leg_skin_female_adult_51_years	chr3	101466856	101466875	101466874	-	RAMPAGE_only	3	3	16	1.317161	3.506891	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.687500
lower_leg_skin_female_adult_51_years	chr19	51027569	51027684	51027667	-	High_confidence	87	89	751	61.824235	7.583260	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.597870
lower_leg_skin_female_adult_51_years	chr2	37384500	37384501	37384500	-	RAMPAGE_only	8	11	12	0.987871	2.663533	chr2	37383330	37385519	LTR|ERV1|HERVH-int	-	chr2	37376000	37376699	STRG.9777.1	-	37376000,37376596	37376302,37376699	0.500000
lower_leg_skin_female_adult_51_years	chr6	30547838	30547842	30547841	-	High_confidence	4	4	9	0.740903	2.503258	chr6	30547636	30547854	SINE|MIR|MIRb	+	chr6	30547195	30547817	GNL1|ENST00000464231.1	-	30547195,30547351	30547274,30547817	0.888889
lower_leg_skin_female_adult_51_years	chr20	44696111	44696112	44696111	-	High_confidence	9	9	9	0.740903	2.947703	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.666667
lower_leg_skin_female_adult_51_years	chr12	116715518	116715529	116715518	-	RAMPAGE_only	4	4	8	0.658580	2.521641	chr12	116715385	116715630	DNA|TcMar-Tigger|Tigger19b	+	chr12	116710184	116738061	C12orf49|ENST00000261318.4	-	116710184,116719762,116720295,116723066,116737789	116717893,116719876,116720447,116723223,116738061	0.875000
lower_leg_skin_female_adult_51_years	chr12	53251623	53251684	53251683	+	High_confidence	8	8	48	3.951482	4.803509	chr12	53251547	53251701	SINE|MIR|MIRc	-	chr12	53251652	53253752	MFSD5|ENST00000551660.2	+	53251652,53252817	53252035,53253752	0.979167
lower_leg_skin_female_adult_51_years	chr19	17312151	17312175	17312151	+	RAMPAGE_only	2	2	8	0.658580	2.521641	chr19	17312030	17312227	SINE|MIR|MIRb	-	chr19	17309573	17314732	DDA1|ENST00000596925.1	+	17309573,17314022,17314337	17309657,17314103,17314732	0.500000
lower_leg_skin_female_adult_51_years	chr12	92061934	92061939	92061934	-	RAMPAGE_only	8	11	21	1.728774	3.975418	chr12	92061775	92062118	LTR|ERVL-MaLR|THE1B	-	chr12	91993084	92028257	LINC01619|ENST00000551306.1	-	91993084,92028169	91993529,92028257	0.809524
lower_leg_skin_female_adult_51_years	chrX	147937504	147937542	147937504	+	RAMPAGE_only	1	1	8	0.658580	2.521641	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.98843.12	+	147940580,147943130,147945533,147948682	147940662,147945051,147945616,147950315	0.875000
lower_leg_skin_female_adult_51_years	chr1	33021434	33021458	33021457	-	RAMPAGE_only	4	4	9	0.740903	2.500000	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.888889
lower_leg_skin_female_adult_51_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	6	6	9	0.740903	2.750000	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182909114	183038472	NCKAP1|ENST00000361354.8	-	182909114,182926815,182928116,182928782,182930694,182934751,182935292,182942069,182952404,182952792,182953112,182956461,182957456,182962158,182964675,182967215,182976892,182978833,182981243,182982820,182983285,182986170,182989029,182994838,182995700,183001952,183002126,183002973,183003232,183023805,183037991	182925818,182926905,182928226,182928899,182930788,182934832,182935375,182942163,182952502,182952923,182953331,182956593,182957596,182962278,182964808,182967361,182976951,182978915,182981376,182982927,182983382,182986227,182989186,182994887,182995838,183002043,183002269,183003030,183003325,183023916,183038472	0.666667
lower_leg_skin_female_adult_51_years	chr11	123061182	123061257	123061256	-	High_confidence	16	29	78	6.421159	5.016996	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.923077
lower_leg_skin_female_adult_51_years	chr9	33262215	33262237	33262225	-	RAMPAGE_only	5	6	19	1.564128	3.683542	chr9	33262201	33262256	LINE|L2|L2a	+	chr9	33257719	33261119	BAG1|ENST00000473464.2	-	33257719,33258919,33261086	33258123,33259033,33261119	0.736842
lower_leg_skin_female_adult_51_years	chr3	135965701	135965749	135965723	+	High_confidence	65	96	435	35.810309	6.682081	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.983908
lower_leg_skin_female_adult_51_years	chr11	67432386	67432391	67432390	+	High_confidence	5	5	11	0.905548	2.921928	chr11	67432311	67432468	LINE|L2|L2b	+	chr11	67432775	67434644	RPS6KB2|ENST00000526268.5	+	67432775,67432951,67433125,67433994,67434197,67434376,67434581	67432837,67433042,67433447,67434057,67434275,67434484,67434644	0.818182
lower_leg_skin_female_adult_51_years	chr1	155378330	155378354	155378353	-	RAMPAGE_only	6	6	14	1.152516	3.664498	chr1	155378311	155378369	LINE|CR1|L3	+	chr1	155370146	155370868	ASH1L|ENST00000477427.1	-	155370146,155370776	155370650,155370868	0.571429
lower_leg_skin_female_adult_51_years	chr3	124751128	124751163	124751128	-	High_confidence	6	6	47	3.869160	4.841615	chr3	124749415	124751370	Retroposon|SVA|SVA_D	-	chr3	124750215	124751131	STRG.21259.1	-	124750215	124751131	0.978723
lower_leg_skin_female_adult_51_years	chr8	12522775	12522816	12522813	+	RAMPAGE_only	19	19	80	6.585804	4.605466	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12564259	12567033	STRG.44994.5	+	12564259	12567033	0.875000
lower_leg_skin_female_adult_51_years	chr14	64023956	64024013	64023987	+	RAMPAGE_only	2	2	10	0.823225	2.725481	chr14	64023944	64024082	DNA|TcMar-Tigger|Tigger19b	+	chr14	64003023	64049279	SYNE2|ENST00000557005.1	+	64003023,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024911,64025129,64026578,64027483,64029894,64031015,64047999	64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64049279	0.800000
lower_leg_skin_female_adult_51_years	chr17	4143196	4143215	4143199	+	High_confidence	44	46	129	10.619609	5.757259	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.968992
lower_leg_skin_female_adult_51_years	chr11	35204258	35204287	35204268	+	RAMPAGE_only	3	3	11	0.905548	3.277613	chr11	35204251	35204367	SINE|MIR|MIR3	+	chr11	35201082	35211253	CD44|ENST00000526553.6	+	35201082,35204511,35206114,35208104,35209964,35211245	35201195,35204640,35206243,35208206,35210054,35211253	0.545455
lower_leg_skin_female_adult_51_years	chr5	171400150	171400178	171400150	+	RAMPAGE_only	3	3	26	2.140386	4.286790	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171387850	171407125	NPM1|ENST00000393820.2	+	171387850,171390050,171391304,171391705,171392709,171392913,171400152,171400838,171405301,171406396	171388006,171390130,171391424,171391799,171392816,171392978,171400210,171400925,171405403,171407125	0.576923
lower_leg_skin_female_adult_51_years	chr1	224311970	224311971	224311970	-	High_confidence	7	7	8	0.658580	2.521641	chr1	224311954	224312176	SINE|MIR|MIR	+	chr1	224308007	224312124	NVL|ENST00000498767.1	-	224308007,224311799	224308263,224312124	0.500000
lower_leg_skin_female_adult_51_years	chr11	57814072	57814073	57814072	+	High_confidence	7	7	9	0.740903	2.641604	chr11	57814032	57814187	SINE|Alu|AluJr4	+	chr11	57813916	57815481	CTNND1|ENST00000525821.1	+	57813916,57815393	57814373,57815481	1.000000
lower_leg_skin_female_adult_51_years	chr1	226685502	226685652	226685502	-	High_confidence	19	21	262	21.568508	6.511331	chr1	226685320	226685763	LINE|L2|L2c	+	chr1	226631719	226685674	STRG.7913.3	-	226631719,226637678,226639556,226641920,226647166,226648671,226685368	226634886,226637750,226639658,226642125,226647380,226648771,226685674	0.942748
lower_leg_skin_female_adult_51_years	chr2	53874285	53874286	53874285	-	High_confidence	5	7	8	0.658580	2.521641	chr2	53873963	53874259	SINE|Alu|AluJr	-	chr2	53831249	53874596	STRG.10437.9	-	53831249,53871393	53831267,53874596	0.750000
lower_leg_skin_female_adult_51_years	chr6	70394883	70394884	70394883	+	High_confidence	44	44	47	3.869160	5.152391	chr6	70394625	70395013	LTR|ERV1|MER48	+	chr6	70394886	70399417	AL365226.2|ENST00000418403.1	+	70394886,70395229,70399214	70395043,70395266,70399417	0.595745
lower_leg_skin_female_adult_51_years	chr7	101308269	101308317	101308316	+	High_confidence	7	7	33	2.716644	4.127283	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	1.000000
lower_leg_skin_female_adult_51_years	chr8	27977120	27977126	27977125	-	RAMPAGE_only	6	7	12	0.987871	3.459432	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.750000
lower_leg_skin_female_adult_51_years	chr1	75376200	75376242	75376241	-	High_confidence	5	5	22	1.811096	3.558519	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75219816	75375976	STRG.3460.1	-	75219816,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75375976	0.909091
lower_leg_skin_female_adult_51_years	chrX	20204028	20204041	20204040	-	RAMPAGE_only	4	4	9	0.740903	2.750000	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.888889
lower_leg_skin_female_adult_51_years	chr5	34244736	34244760	34244753	-	High_confidence	10	10	29	2.387354	4.142295	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34063721	34244867	STRG.29312.4	-	34063721,34169026,34175444,34175821,34179012,34182679,34218294,34239374,34244615	34064715,34169153,34175537,34175957,34179097,34182867,34218450,34239448,34244867	0.793103
lower_leg_skin_female_adult_51_years	chr5	151563326	151563376	151563326	-	RAMPAGE_only	4	4	13	1.070193	3.418296	chr5	151563125	151563282	DNA|hAT-Charlie|MER5A	-	chr5	151504091	151568944	FAT2|NM_001447.2	-	151504091,151507153,151510020,151512164,151517619,151521275,151525767,151527233,151527995,151529177,151531586,151534408,151537792,151540566,151542284,151549294,151550589,151551466,151553176,151554361,151556343,151563324,151565672	151506097,151507611,151510174,151512606,151517765,151522086,151525965,151527377,151528133,151529392,151531970,151534642,151537946,151540763,151546337,151549505,151550871,151551606,151553387,151554673,151556402,151563639,151568944	0.846154
lower_leg_skin_female_adult_51_years	chr17	39964045	39964141	39964053	+	RAMPAGE_only	6	6	75	6.174191	5.590495	chr17	39963949	39964266	LINE|L2|L2c	-	chr17	39962972	39977766	GSDMA|NM_178171.4	+	39962972,39965682,39966259,39970481,39971523,39972128,39972586,39973809,39974272,39974899,39975923,39976815	39963085,39965901,39966437,39970647,39971620,39972176,39972613,39973830,39974427,39975014,39975997,39977766	0.693333
lower_leg_skin_female_adult_51_years	chr3	182873940	182874008	182874007	+	High_confidence	5	5	21	1.728774	4.221928	chr3	182874046	182874599	DNA|hAT-Charlie|Cheshire	+	chr3	182873965	182919063	ATP11B|ENST00000466758.5	+	182873965,182879495,182880878,182884752,182885950,182887585,182889409,182896699,182897302,182898606,182902480,182908458,182913860,182918022	182874015,182879649,182880947,182884898,182886010,182887713,182889548,182896765,182897406,182898772,182902566,182908505,182913994,182919063	0.904762
lower_leg_skin_female_adult_51_years	chr16	30354680	30354682	30354680	-	High_confidence	2	5	7	0.576258	2.584963	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.857143
lower_leg_skin_female_adult_51_years	chr8	12488609	12488645	12488620	-	RAMPAGE_only	13	13	65	5.350966	5.525988	chr8	12485575	12493402	LTR|ERV1|HERVE-int	-	chr8	12487188	12601673	STRG.45058.2	-	12487188,12601157	12487908,12601673	0.707692
lower_leg_skin_female_adult_51_years	chr4	152412488	152412507	152412506	-	High_confidence	4	4	13	1.070193	3.334679	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
lower_leg_skin_female_adult_51_years	chr9	42569330	42569371	42569350	-	High_confidence	9	9	36	2.963612	4.514718	chr9	42569304	42569520	LTR|ERV1|MER90a	-	chr9	42567858	42569349	LOC103908605|NR_126050.1	-	42567858,42569028	42568059,42569349	0.888889
lower_leg_skin_female_adult_51_years	chr6	43025276	43025293	43025292	+	High_confidence	3	3	9	0.740903	2.750000	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.777778
lower_leg_skin_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	228	228	228	18.769541	4.113820	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.973684
lower_leg_skin_female_adult_51_years	chr17	13940609	13940612	13940611	-	RAMPAGE_only	4	7	10	0.823225	3.169925	chr17	13940368	13940765	LTR|ERVL-MaLR|MLT1J	-	chr17	13776831	13892839	COX10-AS1|ENST00000577798.6	-	13776831,13790268,13865078,13880301,13892724	13777349,13790313,13865266,13880371,13892839	0.700000
lower_leg_skin_female_adult_51_years	chr5	23951347	23951366	23951347	+	High_confidence	3	3	13	1.070193	2.855389	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.615385
lower_leg_skin_female_adult_51_years	chr7	87040212	87040249	87040212	-	High_confidence	3	4	10	0.823225	2.921928	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.500000
lower_leg_skin_female_adult_51_years	chr10	59806966	59807065	59806966	-	RAMPAGE_only	13	14	56	4.610063	5.173252	chr10	59806852	59806982	LINE|Penelope|Penelope1_Vert	+	chr10	59791751	59805576	CCDC6|ENST00000491922.1	-	59791751,59794472,59804419	59793111,59794597,59805576	0.982143
lower_leg_skin_female_adult_51_years	chr22	37849317	37849333	37849321	-	High_confidence	10	10	32	2.634322	3.934530	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.937500
lower_leg_skin_female_adult_51_years	chr9	121313947	121314021	121314002	+	RAMPAGE_only	30	32	112	9.220126	5.110908	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.991071
lower_leg_skin_female_adult_51_years	chr15	39420963	39420982	39420963	-	High_confidence	3	3	9	0.740903	2.947703	chr15	39420570	39426588	LINE|L1|L1PA2	+	chr15	38886633	39420975	AC013652.1|ENST00000560484.1	-	38886633,38974154,39071502,39420908	38886929,38974235,39071608,39420975	0.777778
lower_leg_skin_female_adult_51_years	chr15	72563267	72563268	72563267	+	RAMPAGE_only	6	6	9	0.740903	2.750000	chr15	72563062	72563358	SINE|Alu|AluJr	-	chr15	72474644	72563500	ARIH1|ENST00000564062.1	+	72474644,72518066,72561482,72563393	72475014,72518134,72561549,72563500	0.555556
lower_leg_skin_female_adult_51_years	chr6	36369257	36369310	36369309	-	RAMPAGE_only	16	16	37	3.045934	4.405765	chr6	36369227	36369398	SINE|MIR|MIRb	-	chr6	36354090	36387566	ETV7|ENST00000339796.9	-	36354090,36366874,36368928,36371329,36373452,36375870,36385533,36387535	36354687,36366975,36369071,36371560,36373578,36376035,36385669,36387566	0.864865
lower_leg_skin_female_adult_51_years	chr15	33194708	33194749	33194708	-	High_confidence	28	32	115	9.467093	5.507839	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.895652
lower_leg_skin_female_adult_51_years	chr12	52675074	52675590	52675111	-	RAMPAGE_only	943	1198	5872	483.398011	6.528908	chr12	52675091	52675148	LINE|RTE-BovB|MamRTE1	-	chr12	52674735	52680407	KRT1|NM_006121.3	-	52674735,52675709,52676274,52677058,52677315,52677649,52678162,52678541,52679757	52675617,52675744,52676495,52677184,52677480,52677745,52678223,52678756,52680407	0.997956
lower_leg_skin_female_adult_51_years	chr10	65570509	65570522	65570519	+	High_confidence	22	41	107	8.808513	5.934736	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570535	65585775	LINC01515|ENST00000608678.5	+	65570535,65571424,65572934,65581611,65585484	65570759,65571579,65573056,65581673,65585775	0.672897
lower_leg_skin_female_adult_51_years	chr18	51028411	51028428	51028411	+	High_confidence	5	6	15	1.234838	3.640224	chr18	51028217	51028743	LTR|ERVL-MaLR|MLT1F2	+	chr18	51028393	51048816	SMAD4|ENST00000588860.5	+	51028393,51046919,51048685	51028665,51047295,51048816	0.933333
lower_leg_skin_female_adult_51_years	chr18	23952747	23952755	23952747	+	RAMPAGE_only	4	4	8	0.658580	2.521641	chr18	23952642	23952823	SINE|MIR|MIRb	+	chr18	23949892	23954799	LAMA3|ENST00000588004.1	+	23949892,23950028,23951683,23954502	23949924,23950159,23951777,23954799	0.625000
lower_leg_skin_female_adult_51_years	chr14	31250775	31250776	31250775	-	High_confidence	104	115	134	11.031222	5.419367	chr14	31250669	31251138	LTR|ERV1|LTR7Y	-	chr14	31246481	31250764	STRG.70078.1	-	31246481	31250764	0.992537
lower_leg_skin_female_adult_51_years	chr21	33931521	33931540	33931539	+	High_confidence	4	4	8	0.658580	2.807355	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931213	33971186	LINC00649|ENST00000400353.6	+	33931213,33945809,33969236	33931267,33945895,33971186	0.500000
lower_leg_skin_female_adult_51_years	chr1	116390272	116390343	116390289	+	RAMPAGE_only	24	24	66	5.433288	4.966585	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.893939
lower_leg_skin_female_adult_51_years	chr17	59209392	59209418	59209392	+	High_confidence	10	10	29	2.387354	4.375222	chr17	59209373	59209528	SINE|Alu|AluSx3	-	chr17	59209399	59215239	SMG8|ENST00000543872.6	+	59209399,59209899,59212340,59212728,59214804	59209511,59211810,59212486,59213601,59215239	0.724138
lower_leg_skin_female_adult_51_years	chr4	168337290	168337332	168337290	-	RAMPAGE_only	15	15	46	3.786837	4.815459	chr4	168337176	168338563	LINE|L2|L2a	+	chr4	168293819	168325955	STRG.28262.1	-	168293819,168302299,168306378,168308005,168310997,168311255,168324838,168325769	168293945,168302416,168306720,168308195,168311067,168311365,168324984,168325955	0.760870
lower_leg_skin_female_adult_51_years	chr2	72088483	72088488	72088483	-	High_confidence	129	135	269	22.144766	5.279783	chr2	72088481	72089105	LTR|ERV1|MER41B	+	chr2	72079801	72088476	STRG.11498.2	-	72079801,72087723	72079984,72088476	0.973978
lower_leg_skin_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	24	24	24	1.975741	3.918296	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.833333
lower_leg_skin_female_adult_51_years	chr17	13940701	13940702	13940701	-	RAMPAGE_only	7	7	11	0.905548	3.121928	chr17	13940368	13940765	LTR|ERVL-MaLR|MLT1J	-	chr17	13892740	13931108	STRG.80522.3	-	13892740,13898608,13931022	13892839,13898732,13931108	0.545455
lower_leg_skin_female_adult_51_years	chr3	111918750	111918751	111918750	+	RAMPAGE_only	10	10	15	1.234838	3.373557	chr3	111918716	111918806	SINE|MIR|MIR3	+	chr3	111911609	111976465	PHLDB2|ENST00000495180.1	+	111911609,111913318,111919071,111920281,111932268,111939474,111940534,111945267,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111911724,111913702,111919215,111920419,111932397,111939630,111940645,111945357,111954029,111962312,111966703,111967824,111969909,111973817,111976465	0.800000
lower_leg_skin_female_adult_51_years	chr12	119179186	119179244	119179186	+	High_confidence	15	15	36	2.963612	3.829966	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.944444
lower_leg_skin_female_adult_51_years	chr22	32461628	32461649	32461648	-	RAMPAGE_only	3	3	7	0.576258	2.584963	chr22	32461578	32461771	DNA|hAT|MamRep38	+	chr22	32453333	32464449	BPIFC|ENST00000397450.2	-	32453333,32457262,32461573,32464373	32453503,32457386,32461661,32464449	0.857143
lower_leg_skin_female_adult_51_years	chr8	56559496	56559497	56559496	-	High_confidence	20	20	21	1.728774	3.621928	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.619048
lower_leg_skin_female_adult_51_years	chr8	144106368	144106444	144106368	+	High_confidence	7	7	23	1.893419	4.001823	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.956522
lower_leg_skin_female_adult_51_years	chr1	155343321	155343324	155343321	-	RAMPAGE_only	16	16	30	2.469676	4.137538	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.866667
lower_leg_skin_female_adult_51_years	chr3	14017465	14017488	14017486	+	High_confidence	5	9	16	1.317161	3.750000	chr3	14012549	14017955	LINE|L1|L1PB1	-	chr3	14017552	14065984	TPRXL|ENST00000429201.6	+	14017552,14057137,14063378,14064019	14017665,14057184,14063508,14065984	0.625000
lower_leg_skin_female_adult_51_years	chr20	40619767	40619783	40619767	-	High_confidence	3	3	8	0.658580	2.500000	chr20	40619322	40625356	LINE|L1|L1PA3	+	chr20	40597682	40619332	STRG.90994.1	-	40597682,40605459,40619158	40597938,40605544,40619332	0.750000
lower_leg_skin_female_adult_51_years	chr17	8413624	8413631	8413627	+	High_confidence	4	4	14	1.152516	2.931209	chr17	8413630	8413872	SINE|MIR|MIRc	+	chr17	8413194	8446884	NDEL1|ENST00000580237.5	+	8413194,8444259,8444623,8445710,8446753	8413269,8444357,8444742,8445864,8446884	0.714286
lower_leg_skin_female_adult_51_years	chr4	2839441	2839444	2839441	+	RAMPAGE_only	16	16	32	2.634322	3.136698	chr4	2839159	2839457	SINE|Alu|AluJb	-	chr4	2818813	2841098	SH3BP2|ENST00000356331.9	+	2818813,2820613,2822934,2824612,2825125,2827229,2827605,2829492,2831570,2831922,2832330,2832989,2833696	2819070,2820753,2823037,2824730,2825196,2827318,2827674,2830147,2831679,2831978,2832412,2833049,2841098	1.000000
lower_leg_skin_female_adult_51_years	chr6	31587007	31587010	31587009	+	High_confidence	5	8	9	0.740903	2.750000	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587085	31587841	LST1|ENST00000419073.1	+	31587085,31587199,31587640,31587815	31587106,31587318,31587733,31587841	0.555556
lower_leg_skin_female_adult_51_years	chr17	47067498	47067518	47067512	-	High_confidence	34	43	155	12.759995	5.353613	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47033246	47067488	STRG.82257.2	-	47033246,47054117,47056459,47067413	47033381,47054213,47056753,47067488	0.916129
lower_leg_skin_female_adult_51_years	chr19	10690384	10690502	10690403	+	RAMPAGE_only	3	5	29	2.387354	3.986188	chr19	10690378	10690577	DNA|hAT-Charlie|MER20	+	chr19	10687604	10692398	ILF3|ENST00000586544.1	+	10687604,10688549,10689178	10688114,10688678,10692398	0.931034
lower_leg_skin_female_adult_51_years	chr4	69851781	69851782	69851781	-	RAMPAGE_only	10	10	11	0.905548	3.121928	chr4	69851104	69852133	LINE|L1|L1PA5	+	chr4	69849125	69860141	STRG.25846.9	-	69849125,69855300,69857499	69854314,69855426,69860141	0.909091
lower_leg_skin_female_adult_51_years	chr19	51068863	51068868	51068863	-	RAMPAGE_only	2	3	7	0.576258	2.584963	chr19	51068820	51069173	LINE|L2|L2a	+	chr19	51056536	51066437	STRG.88688.3	-	51056536,51058537,51059744,51060432,51065015,51065637	51056775,51058674,51060093,51060619,51065106,51066437	0.857143
lower_leg_skin_female_adult_51_years	chr9	20658589	20658607	20658606	+	High_confidence	5	6	10	0.823225	2.921928	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.600000
lower_leg_skin_female_adult_51_years	chr6	111916397	111916398	111916397	-	High_confidence	29	29	30	2.469676	4.159200	chr6	111916162	111916607	LTR|ERVL|MLT2A2	-	chr6	111900488	111916384	STRG.37416.1	-	111900488,111901742,111916244	111901141,111901850,111916384	0.833333
lower_leg_skin_female_adult_51_years	chr10	95697656	95697693	95697656	+	High_confidence	5	5	29	2.387354	4.450212	chr10	95697436	95697843	LTR|ERVL-MaLR|MSTC	+	chr10	95697856	95698232	STRG.56680.1	+	95697856	95698232	0.758621
lower_leg_skin_female_adult_51_years	chr6	79631273	79631329	79631302	+	High_confidence	45	46	144	11.854447	5.989408	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.979167
lower_leg_skin_female_adult_51_years	chr1	23417911	23417941	23417940	-	RAMPAGE_only	3	3	11	0.905548	2.921928	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.909091
lower_leg_skin_female_adult_51_years	chr5	149497896	149497912	149497911	-	RAMPAGE_only	23	23	39	3.210579	4.599379	chr5	149497822	149498130	SINE|Alu|AluSg	-	chr5	149494313	149504670	AC021078.1|ENST00000499521.2	-	149494313,149501014	149499293,149504670	1.000000
lower_leg_skin_female_adult_51_years	chr18	30991809	30991967	30991966	-	RAMPAGE_only	316	318	1039	85.533129	6.591578	chr18	30991883	30992175	SINE|Alu|AluY	+	chr18	30990007	31042741	DSC3|ENST00000360428.8	-	30990007,30996790,31001617,31004141,31006906,31008015,31008268,31018070,31018665,31022335,31024348,31025759,31029508,31030972,31032191,31042591	30994372,30997048,31001739,31004366,31007131,31008158,31008525,31018256,31018800,31022502,31024493,31025915,31029628,31031172,31032276,31042741	0.992300
lower_leg_skin_female_adult_51_years	chr2	241250226	241250227	241250226	-	High_confidence	15	18	18	1.481806	3.239098	chr2	241250192	241250357	DNA|hAT-Charlie|MER5B	-	chr2	241229223	241250937	HDLBP|ENST00000487169.5	-	241229223,241230758,241233819,241235120,241236614,241238648,241239601,241239900,241242459,241246751,241247055,241248002,241248243,241249840	241230269,241230944,241233963,241235594,241236769,241238787,241239820,241240122,241242678,241246883,241247142,241248116,241248348,241250937	1.000000
lower_leg_skin_female_adult_51_years	chr19	7642274	7642316	7642301	+	High_confidence	3	3	21	1.728774	3.787144	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.714286
lower_leg_skin_female_adult_51_years	chr3	50484122	50484146	50484131	-	RAMPAGE_only	5	5	23	1.893419	3.970573	chr3	50483973	50484750	LINE|L2|L2a	+	chr3	50362798	50503423	CACNA2D2|ENST00000423994.6	-	50362798,50364887,50365074,50365355,50365632,50365809,50366010,50366266,50366577,50366830,50367010,50367393,50367641,50367811,50368137,50370319,50373064,50374736,50375643,50375808,50375962,50376113,50377466,50377731,50378007,50378283,50378914,50379091,50379431,50379724,50379967,50380747,50380994,50384195,50387567,50394108,50434312,50476117,50503217	50364806,50364976,50365184,50365482,50365688,50365862,50366163,50366338,50366628,50366919,50367109,50367497,50367704,50367902,50368235,50370380,50373085,50374813,50375705,50375880,50376034,50376188,50377541,50377803,50378097,50378333,50378993,50379199,50379590,50379824,50380018,50380805,50381126,50384337,50387612,50394168,50434429,50476199,50503423	0.826087
lower_leg_skin_female_adult_51_years	chr1	201321712	201321713	201321712	+	RAMPAGE_only	4	4	7	0.576258	2.584963	chr1	201321637	201321806	SINE|MIR|MIRb	-	chr1	201283702	201328836	PKP1|ENST00000352845.3	+	201283702,201293941,201313165,201316552,201317571,201318617,201319815,201320266,201321977,201323012,201324427,201324940,201325753,201328761	201283904,201294045,201313560,201316697,201317779,201318795,201319878,201320381,201322133,201323189,201324581,201325127,201325838,201328836	0.571429
lower_leg_skin_female_adult_51_years	chr5	50443312	50443313	50443312	-	High_confidence	4	4	7	0.576258	2.521641	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	1.000000
lower_leg_skin_female_adult_51_years	chr2	201115924	201116034	201116023	+	High_confidence	5	5	34	2.798967	4.317121	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.970588
lower_leg_skin_female_adult_51_years	chr9	90997678	90997732	90997683	+	High_confidence	44	58	204	16.793800	4.669022	chr9	90997473	90998100	DNA|TcMar-Tigger|MER6A	+	chr9	90997689	91001703	STRG.51307.1	+	90997689,91000769,91001469	90997817,91000840,91001703	0.872549
lower_leg_skin_female_adult_51_years	chr9	130079507	130079532	130079507	+	RAMPAGE_only	3	3	8	0.658580	2.521641	chr9	130079384	130079578	SINE|MIR|MIRb	+	chr9	130053924	130136123	GPR107|ENST00000610997.1	+	130053924,130075635,130076411,130077298,130079629,130083564,130086419,130090875,130092247,130099456,130100628,130101105,130104419,130107495,130110369,130114572,130124914,130127482,130128639,130135024	130054073,130075749,130076462,130077378,130079769,130083602,130086476,130090983,130092381,130099532,130100702,130101223,130104550,130107539,130110422,130114663,130124964,130127566,130128761,130136123	0.875000
lower_leg_skin_female_adult_51_years	chr8	39032698	39032749	39032736	+	High_confidence	11	11	48	3.951482	5.001823	chr8	39031444	39032803	LINE|L1|L1P2	-	chr8	39032716	39105001	STRG.45719.2	+	39032716,39041945,39054480,39055576,39071297,39077227,39082640,39082967,39090046,39091258,39101862,39103606	39032836,39042117,39054573,39055772,39071403,39077411,39082721,39083073,39090188,39091346,39101930,39105001	0.708333
lower_leg_skin_female_adult_51_years	chr3	57267761	57267792	57267761	+	RAMPAGE_only	3	3	14	1.152516	3.521641	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.857143
lower_leg_skin_female_adult_51_years	chr20	34132098	34132138	34132137	+	High_confidence	8	8	32	2.634322	4.238609	chr20	34131810	34133679	Retroposon|SVA|SVA_D	+	chr20	34132104	34136272	STRG.90731.1	+	34132104,34135500	34132510,34136272	0.937500
lower_leg_skin_female_adult_51_years	chr9	108639958	108639980	108639958	-	High_confidence	16	16	54	4.445418	5.282484	chr9	108639757	108640012	LTR|ERVL-MaLR|MLT1L	-	chr9	108637010	108639931	STRG.52341.1	-	108637010	108639931	0.907407
lower_leg_skin_female_adult_51_years	chr9	127531671	127531737	127531671	-	RAMPAGE_only	5	5	24	1.975741	3.969002	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.541667
lower_leg_skin_female_adult_51_years	chrX	101499020	101499021	101499020	+	RAMPAGE_only	7	8	11	0.905548	3.321928	chrX	101498232	101500000	LTR|ERVL|HERV16-int	+	chrX	101485474	101533459	ARMCX4|ENST00000354842.4	+	101485474,101486022,101487192,101487607,101488043,101488443,101498144,101504936,101509363,101509589,101511024,101531643,101533083	101485530,101486092,101487272,101487691,101488099,101489315,101499366,101505355,101509427,101509678,101511055,101532012,101533459	0.909091
lower_leg_skin_female_adult_51_years	chr17	7139215	7139220	7139215	-	High_confidence	13	13	32	2.634322	4.215061	chr17	7139009	7139390	LTR|ERVL-MaLR|MLT1A	-	chr17	7101376	7139206	STRG.80088.4	-	7101376,7102089,7106999,7107835,7108461,7108771,7114173,7114614,7139124	7101740,7102196,7107317,7107907,7108557,7108888,7114310,7114811,7139206	0.718750
lower_leg_skin_female_adult_51_years	chr10	110884861	110884887	110884861	+	High_confidence	7	7	28	2.305031	3.796580	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110884770	110894179	PDCD4|ENST00000481353.5	+	110884770,110887664,110889532,110890555,110894090	110885366,110887886,110889630,110890670,110894179	0.964286
lower_leg_skin_female_adult_51_years	chr1	71014457	71014460	71014459	-	RAMPAGE_only	11	18	22	1.811096	3.921928	chr1	71014455	71014826	LTR|ERVL-MaLR|MLT1A	+	chr1	71005853	71047808	PTGER3|NM_198715.2	-	71005853,71046680	71012484,71047808	0.863636
lower_leg_skin_female_adult_51_years	chr19	46180850	46180868	46180850	-	High_confidence	98	99	354	29.142183	6.684248	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46163892	46180647	AC006262.2|ENST00000599127.1	-	46163892,46164577,46173933,46179485,46180604	46164216,46164651,46174052,46179537,46180647	0.500000
lower_leg_skin_female_adult_51_years	chr12	110440313	110440327	110440319	-	RAMPAGE_only	4	4	13	1.070193	3.251629	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.923077
lower_leg_skin_female_adult_51_years	chr19	53075363	53075364	53075363	-	High_confidence	9	9	9	0.740903	2.725481	chr19	53075307	53076101	LTR|ERVL|MER21B	+	chr19	53066614	53075967	ZNF160|ENST00000601421.5	-	53066614,53074139,53075056	53070262,53074268,53075967	1.000000
lower_leg_skin_female_adult_51_years	chr8	129786086	129786122	129786086	-	High_confidence	3	3	7	0.576258	2.521641	chr8	129786052	129786345	SINE|Alu|AluSg7	+	chr8	129748196	129786613	STRG.48031.3	-	129748196,129749451,129749755,129750430,129751541,129751861,129752105,129752697,129760544,129762625,129765733,129776101,129777367,129786010	129748888,129749525,129750119,129750570,129751568,129751891,129752147,129752820,129761008,129762731,129765793,129776285,129777591,129786613	0.857143
lower_leg_skin_female_adult_51_years	chr2	241372946	241372972	241372949	+	High_confidence	14	15	55	4.527740	4.635550	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241372559	241395644	FARP2|ENST00000492868.1	+	241372559,241373083,241395442	241372706,241373290,241395644	0.509091
lower_leg_skin_female_adult_51_years	chr16	20676161	20676162	20676161	-	High_confidence	5	5	8	0.658580	2.750000	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	1.000000
lower_leg_skin_female_adult_51_years	chr11	71745875	71745915	71745881	+	High_confidence	33	33	125	10.290319	5.791994	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.872000
lower_leg_skin_female_adult_51_years	chr1	39315406	39315407	39315406	+	RAMPAGE_only	7	7	9	0.740903	2.500000	chr1	39314609	39315444	LINE|L1|L1MC4	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.555556
lower_leg_skin_female_adult_51_years	chr12	32601282	32601325	32601282	+	RAMPAGE_only	2	2	10	0.823225	2.725481	chr12	32601190	32601318	SINE|MIR|MIRb	-	chr12	32582378	32644751	FGD4|ENST00000494977.1	+	32582378,32598496,32600409,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624658,32624975,32625653,32633548,32637649,32638654,32640275,32642760,32644593	32582467,32598586,32600509,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32624751,32625068,32625779,32633689,32637855,32638795,32640453,32642842,32644751	0.900000
lower_leg_skin_female_adult_51_years	chr19	21151124	21151150	21151149	+	RAMPAGE_only	4	8	12	0.987871	2.663533	chr19	21151048	21151341	SINE|Alu|AluSc8	-	chr19	21142076	21183158	ZNF431|ENST00000598331.1	+	21142076,21143550,21151078,21166334,21167570,21182622	21142186,21143643,21151198,21166461,21167666,21183158	0.916667
lower_leg_skin_female_adult_51_years	chr3	188153195	188153210	188153195	+	High_confidence	2	2	6	0.493935	2.584963	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.666667
lower_leg_skin_female_adult_51_years	chr5	34244813	34244816	34244815	-	High_confidence	9	13	19	1.564128	3.050302	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34063721	34244867	STRG.29312.4	-	34063721,34169026,34175444,34175821,34179012,34182679,34218294,34239374,34244615	34064715,34169153,34175537,34175957,34179097,34182867,34218450,34239448,34244867	0.894737
lower_leg_skin_female_adult_51_years	chr20	35732358	35732359	35732358	-	High_confidence	90	91	119	9.796383	4.639435	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.983193
lower_leg_skin_female_adult_51_years	chr17	1770479	1770502	1770482	+	High_confidence	3	3	19	1.564128	3.836592	chr17	1770450	1770759	SINE|Alu|AluSx1	-	chr17	1770525	1772032	SERPINF1|ENST00000570820.1	+	1770525,1771871	1771184,1772032	0.789474
lower_leg_skin_female_adult_51_years	chr8	133255322	133255358	133255322	-	High_confidence	3	3	12	0.987871	2.913977	chr8	133255180	133255391	SINE|MIR|MIRb	+	chr8	133237175	133256228	NDRG1|ENST00000519278.5	-	133237175,133242022,133244354,133246615,133247874,133248714,133250439,133254538	133239119,133242074,133244390,133246663,133247926,133248771,133250543,133256228	0.916667
lower_leg_skin_female_adult_51_years	chrX	85383035	85383052	85383051	-	RAMPAGE_only	5	5	14	1.152516	3.238901	chrX	85382547	85383367	LTR|ERVL|MER21B	-	chrX	85277388	85379743	POF1B|NM_024921.3	-	85277388,85282202,85303405,85304342,85305790,85306180,85307162,85308123,85314431,85315706,85330948,85345859,85351349,85359549,85367691,85379172,85379638	85279426,85282317,85303488,85304471,85305910,85306333,85307276,85308216,85314506,85315734,85331079,85346042,85351451,85359630,85367766,85379495,85379743	0.928571
lower_leg_skin_female_adult_51_years	chrX	93434924	93434944	93434924	+	High_confidence	19	19	66	5.433288	4.148337	chrX	93430164	93437998	LTR|ERV1|HERVE-int	+	chrX	93434975	93436042	STRG.97728.1	+	93434975,93435178	93435073,93436042	0.939394
lower_leg_skin_female_adult_51_years	chr17	56412560	56412613	56412601	+	High_confidence	3	3	16	1.317161	3.750000	chr17	56412352	56412894	LTR|ERVL|MLT2A2	+	chr17	56412602	56466558	STRG.82625.1	+	56412602,56440326,56442842,56449078,56456860,56457256,56457862,56466355	56412815,56440424,56442914,56449186,56456960,56457389,56457979,56466558	0.812500
lower_leg_skin_female_adult_51_years	chr14	100291506	100291507	100291506	-	RAMPAGE_only	13	13	14	1.152516	3.238901	chr14	100291489	100291554	SINE|MIR|MIR1_Amn	-	chr14	100291115	100296545	SLC25A29|ENST00000554912.1	-	100291115,100293293	100293032,100296545	0.714286
lower_leg_skin_female_adult_51_years	chr8	133255119	133255146	133255145	-	RAMPAGE_only	4	5	13	1.070193	3.392747	chr8	133255118	133255161	LINE|L2|L2b	+	chr8	133237175	133256228	NDRG1|ENST00000519278.5	-	133237175,133242022,133244354,133246615,133247874,133248714,133250439,133254538	133239119,133242074,133244390,133246663,133247926,133248771,133250543,133256228	0.923077
lower_leg_skin_female_adult_51_years	chr2	72033803	72033826	72033825	-	High_confidence	14	19	47	3.869160	4.882045	chr2	72033068	72034127	LINE|L2|L2a	+	chr2	72012964	72033410	STRG.11504.1	-	72012964,72031855,72032404	72014043,72032000,72033410	0.680851
lower_leg_skin_female_adult_51_years	chr13	60410080	60410081	60410080	+	RAMPAGE_only	21	21	22	1.811096	3.784942	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60397830	60573864	TDRD3|ENST00000648252.1	+	60397830,60400255,60402717,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573615	60398631,60400292,60402815,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573864	0.954545
lower_leg_skin_female_adult_51_years	chr16	2770103	2770201	2770177	+	High_confidence	10	11	66	5.433288	5.308365	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2770354	2771410	SRRM2|ENST00000573692.1	+	2770354,2770603,2770857,2771368	2770465,2770717,2771049,2771410	0.833333
lower_leg_skin_female_adult_51_years	chr14	80225607	80225647	80225646	-	High_confidence	18	18	31	2.551999	4.696132	chr14	80225246	80230830	LTR|ERVL|HERVL-int	-	chr14	80188811	80225286	STRG.71975.1	-	80188811,80202686,80211250,80215971,80224890	80188863,80203288,80211525,80216150,80225286	0.612903
lower_leg_skin_female_adult_51_years	chr7	1097259	1097263	1097259	-	High_confidence	20	26	33	2.716644	4.574401	chr7	1097189	1098106	LINE|L1|L1MC4	+	chr7	997015	1097376	STRG.39081.4	-	997015,1000469,1009949,1097196	997804,1000551,1010143,1097376	0.636364
lower_leg_skin_female_adult_51_years	chr8	27503119	27503123	27503121	+	RAMPAGE_only	9	16	20	1.646451	3.821928	chr8	27502947	27503314	LTR|ERVL-MaLR|MLT1A0	+	chr8	27491209	27522509	EPHX2|ENST00000521684.1	+	27491209,27500925,27503603,27504955,27511835,27515717,27516319,27518037,27520882,27522422	27491309,27501010,27503763,27505146,27511910,27515813,27516398,27518072,27520909,27522509	0.800000
lower_leg_skin_female_adult_51_years	chr14	21360422	21360453	21360452	-	RAMPAGE_only	2	2	7	0.576258	2.807355	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351471	21384266	SUPT16H|ENST00000216297.6	-	21351471,21353487,21353702,21354410,21357196,21357926,21358314,21359483,21360414,21360845,21361077,21362196,21362793,21363033,21363232,21363437,21364826,21365069,21366438,21368268,21369203,21369749,21370335,21371873,21373337,21383861	21352818,21353565,21353832,21354540,21357366,21358002,21358427,21359609,21360533,21360972,21361213,21362324,21362947,21363149,21363328,21363503,21364939,21365143,21366529,21368441,21369355,21369896,21370488,21372044,21373430,21384266	1.000000
lower_leg_skin_female_adult_51_years	chr1	3831056	3831088	3831056	-	High_confidence	4	5	15	1.234838	3.807355	chr1	3830948	3831012	LINE|L2|L2a	-	chr1	3829691	3831224	CEP104|ENST00000495701.1	-	3829691,3831045	3829997,3831224	0.533333
lower_leg_skin_female_adult_51_years	chr1	1655395	1655422	1655409	-	RAMPAGE_only	15	20	61	5.021676	5.434595	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.655738
lower_leg_skin_female_adult_51_years	chr10	133523669	133523677	133523673	-	RAMPAGE_only	9	9	18	1.481806	3.572431	chr10	133523363	133523706	LINE|L1|L1ME3G	+	chr10	133472885	133473322	STRG.58037.1	-	133472885	133473322	0.555556
lower_leg_skin_female_adult_51_years	chr18	9117541	9117610	9117541	+	RAMPAGE_only	3	3	34	2.798967	4.452820	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	0.705882
lower_leg_skin_female_adult_51_years	chr1	147173225	147173250	147173225	+	High_confidence	3	3	10	0.823225	3.321928	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.900000
lower_leg_skin_female_adult_51_years	chr12	12635950	12635968	12635950	+	RAMPAGE_only	3	3	6	0.493935	2.584963	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	1.000000
lower_leg_skin_female_adult_51_years	chr17	39970353	39970367	39970366	+	RAMPAGE_only	11	11	29	2.387354	4.306257	chr17	39970223	39970391	SINE|MIR|MIRb	-	chr17	39962972	39977766	GSDMA|NM_178171.4	+	39962972,39965682,39966259,39970481,39971523,39972128,39972586,39973809,39974272,39974899,39975923,39976815	39963085,39965901,39966437,39970647,39971620,39972176,39972613,39973830,39974427,39975014,39975997,39977766	0.931034
lower_leg_skin_female_adult_51_years	chr6	71291142	71291169	71291163	+	High_confidence	2	2	9	0.740903	2.750000	chr6	71290785	71291650	LINE|L2|L2	-	chr6	71291361	71293612	OGFRL1|ENST00000467503.1	+	71291361,71293292,71293532	71292020,71293379,71293612	0.555556
lower_leg_skin_female_adult_51_years	chr3	129399279	129399280	129399279	-	High_confidence	15	15	19	1.564128	3.080501	chr3	129399072	129399375	SINE|Alu|AluSx1	+	chr3	129389271	129399440	STRG.21528.3	-	129389271,129396216,129399007	129393795,129397140,129399440	0.526316
lower_leg_skin_female_adult_51_years	chr4	114542197	114542199	114542197	+	RAMPAGE_only	4	9	11	0.905548	2.845351	chr4	114542002	114542508	LTR|ERVL|MLT2A2	+	chr4	114598401	114678225	UGT8|NM_001322112.1	+	114598401,114619422,114622878,114663994,114665679,114668084,114675924	114598974,114619525,114623702,114664137,114665756,114668304,114678225	0.636364
lower_leg_skin_female_adult_51_years	chr2	159228731	159228735	159228731	+	RAMPAGE_only	6	8	15	1.234838	2.999581	chr2	159228445	159228758	LINE|L2|L2	+	chr2	159224392	159232659	TANC1|ENST00000496406.1	+	159224392,159229577	159228896,159232659	1.000000
lower_leg_skin_female_adult_51_years	chr8	12750374	12750422	12750403	-	RAMPAGE_only	4	4	17	1.399483	3.169249	chr8	12750317	12750588	DNA|TcMar-Tigger|MER44A	-	chr8	12729173	12754342	STRG.45120.5	-	12729173,12731735,12735285,12736700,12736899,12737994,12740873,12743163	12729332,12731857,12735400,12736797,12737140,12738144,12740996,12754342	1.000000
lower_leg_skin_female_adult_51_years	chr5	33297893	33297924	33297923	-	High_confidence	7	8	12	0.987871	3.418296	chr5	33297738	33298188	LTR|ERV1|MER48	-	chr5	33023054	33297910	AC010343.3|ENST00000510327.1	-	33023054,33263499,33297731	33023327,33263666,33297910	0.500000
lower_leg_skin_female_adult_51_years	chr10	93431427	93431495	93431427	-	RAMPAGE_only	3	3	24	1.975741	4.088779	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.958333
lower_leg_skin_female_adult_51_years	chr16	18834560	18834590	18834573	-	RAMPAGE_only	6	6	14	1.152516	3.235926	chr16	18834511	18834750	SINE|Alu|AluSz6	+	chr16	18807759	18896874	SMG1|ENST00000565324.5	-	18807759,18811760,18811947,18815174,18815439,18816301,18817290,18819501,18828030,18829285,18829925,18830218,18832939,18834203,18834891,18835932,18836359,18837252,18838013,18838356,18838550,18839697,18841564,18842207,18845428,18847452,18847815,18849216,18849948,18850236,18852066,18852317,18853582,18854655,18858169,18859021,18859555,18860666,18863649,18864001,18866620,18868189,18868522,18869103,18869853,18870609,18870800,18871363,18872183,18872493,18876123,18877130,18879494,18882164,18884069,18885089,18885540,18889371,18890862,18892217,18896792	18809646,18811867,18812127,18815281,18815651,18816529,18817470,18819654,18828168,18829755,18830115,18830369,18833166,18834438,18835164,18836212,18836532,18837443,18838232,18838466,18838689,18839946,18841794,18842454,18845651,18847607,18848033,18849378,18850126,18850467,18852205,18852462,18853867,18854904,18858290,18859181,18859703,18860776,18863851,18864144,18866775,18868354,18868719,18869303,18869994,18870711,18870888,18871482,18872345,18872624,18876393,18877232,18879719,18882338,18884167,18885162,18885666,18889585,18890921,18892354,18896874	1.000000
lower_leg_skin_female_adult_51_years	chr19	20750362	20750371	20750367	-	RAMPAGE_only	12	16	48	3.951482	4.733029	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746922	20755250	AC010329.1|ENST00000593903.1	-	20746922	20755250	0.958333
lower_leg_skin_female_adult_51_years	chrX	152920368	152920369	152920368	+	High_confidence	9	10	11	0.905548	3.277613	chrX	152920417	152920551	SINE|MIR|MIR3	+	chrX	152920348	152973473	ZNF185|ENST00000426821.6	+	152920348,152920706,152922172,152931671,152932872,152938073,152945266,152959698,152963838,152965446,152967166,152969381,152970442,152971273	152920411,152920748,152922256,152931776,152932971,152938163,152945464,152959896,152963949,152965527,152967238,152969484,152970541,152973473	0.636364
lower_leg_skin_female_adult_51_years	chr14	21020090	21020100	21020090	-	High_confidence	3	3	7	0.576258	2.521641	chr14	21020013	21020322	SINE|Alu|AluSg4	+	chr14	21017994	21020109	NDRG2|ENST00000557416.5	-	21017994,21018203,21018456,21018626,21018762,21019115,21019638,21019919	21018038,21018239,21018504,21018663,21018814,21019160,21019742,21020109	0.857143
lower_leg_skin_female_adult_51_years	chr10	92542518	92542525	92542518	-	RAMPAGE_only	3	3	6	0.493935	2.584963	chr10	92542464	92542589	SINE|Alu|AluJb	-	chr10	92510132	92541353	IDE|ENST00000436178.1	-	92510132,92514919,92531747,92534577,92537365,92541297	92510162,92515042,92531917,92534785,92537550,92541353	1.000000
lower_leg_skin_female_adult_51_years	chr1	75375885	75375886	75375885	-	High_confidence	17	17	21	1.728774	3.646439	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75219816	75375976	STRG.3460.1	-	75219816,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75375976	0.857143
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	58578123	58578168	58578132	-	High_confidence	6	6	30	2.238336	3.881728	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.833333
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	75248150	75248151	75248150	-	High_confidence	15	15	16	1.193779	3.006239	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.937500
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	129488705	129488857	129488856	+	High_confidence	24	24	159	11.863179	5.340544	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.911950
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	66882955	66882956	66882955	+	RAMPAGE_only	7	7	11	0.820723	2.663533	chr5	66882930	66883212	LINE|L1|L1MCc	+	chr5	66828775	67167264	MAST4|ENST00000403666.5	+	66828775,66899950,66916982,67054403,67090161,67095596,67100434,67102535,67104365,67110097,67114086,67118681,67121016,67130209,67131812,67133513,67134522,67136562,67142114,67142420,67144668,67145143,67149388,67152636,67153457,67160455,67162606,67163146	66828882,66899982,66917018,67054492,67090231,67095675,67100592,67102611,67104575,67110199,67114219,67118749,67121102,67130418,67131951,67133646,67134688,67136664,67142237,67142533,67144796,67145379,67149589,67152866,67153580,67160592,67162788,67167264	0.636364
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	53464815	53464816	53464815	+	RAMPAGE_only	10	10	13	0.969945	2.855389	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479624	MSTRG.6388.38	+	53462513,53465931,53467220,53467804,53468779,53471637,53479405	53462567,53465973,53467293,53467843,53468832,53471807,53479624	0.538462
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	11587465	11587469	11587465	-	High_confidence	6	6	11	0.820723	2.845351	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	123602818	123602821	123602818	-	RAMPAGE_only	14	16	22	1.641446	2.928213	chrX	123602725	123603025	SINE|Alu|AluSc8	+	chrX	123602099	123621579	THOC2|ENST00000432353.5	-	123602099,123610917,123611439,123613398,123613638,123614051,123619400,123620374,123621156	123603748,123610963,123611516,123613556,123613708,123614189,123619436,123620965,123621579	0.863636
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	31587009	31587061	31587009	+	High_confidence	13	23	65	4.849727	4.886184	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.907692
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	96043509	96043517	96043509	-	High_confidence	4	4	11	0.820723	2.663533	chr12	96043477	96043634	SINE|Alu|AluYe5	+	chr12	96000752	96043520	LTA4H|NM_001256644.1	-	96000752,96002959,96006313,96009093,96013187,96013749,96014854,96015582,96017043,96017556,96018762,96019167,96021084,96022146,96024478,96027443,96029054,96043288	96001106,96003064,96006409,96009148,96013258,96013853,96014999,96015694,96017114,96017580,96018903,96019240,96021137,96022251,96024547,96027564,96029185,96043520	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	116390211	116390240	116390211	+	RAMPAGE_only	2	2	11	0.820723	3.095795	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116387302	116404772	MSTRG.1556.9	+	116387302,116388637,116388901,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116388244,116388772,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404772	0.909091
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	143558019	143558020	143558019	+	High_confidence	11	11	11	0.820723	2.663533	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143558688	143563059	GSDMD|ENST00000524846.5	+	143558688,143559776,143561741,143561958,143562447,143562661	143559552,143561423,143561828,143562350,143562521,143563059	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	52236320	52236326	52236325	-	RAMPAGE_only	6	6	14	1.044557	3.392747	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52167708	52291557	AL158066.1|ENST00000451298.1	-	52167708,52169986,52171157,52175638,52180581,52183975,52186682,52189638,52223238,52227004,52229325,52233063,52235219,52253744,52253936,52258528,52279840,52280651,52280861,52283237,52289821,52291506	52169304,52170099,52171248,52175776,52180654,52184114,52186823,52189914,52223331,52227096,52229431,52233144,52235281,52253833,52254018,52258590,52279905,52280715,52280961,52283357,52289983,52291557	0.571429
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	10710653	10710654	10710653	-	High_confidence	18	18	18	1.343001	2.932999	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.500000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	102449836	102449845	102449844	+	High_confidence	6	8	23	1.716057	4.001823	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449852	102456293	RPARP-AS1|ENST00000492465.2	+	102449852,102450186,102451398,102452089,102455336	102450022,102450360,102451555,102452187,102456293	0.826087
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	99906528	99906573	99906550	-	High_confidence	2	2	16	1.193779	3.640224	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.875000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	49086520	49086547	49086520	+	High_confidence	8	9	18	1.343001	3.947703	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.666667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	4355592	4355593	4355592	-	High_confidence	103	104	104	7.759564	4.316413	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.923077
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	152412488	152412500	152412488	-	High_confidence	4	4	8	0.596890	2.521641	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.875000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	67387452	67387468	67387464	-	RAMPAGE_only	7	8	27	2.014502	3.287864	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.777778
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	170743955	170743956	170743955	-	RAMPAGE_only	15	16	17	1.268390	3.625000	chr2	170743777	170744187	LTR|ERVL|LTR52	-	chr2	170723085	170770766	AC007405.1|ENST00000442456.4	-	170723085,170727284,170727658,170730367,170733878,170740631,170770701	170723593,170727328,170727788,170730997,170733994,170741287,170770766	0.705882
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	50271485	50271486	50271485	+	High_confidence	21	21	30	2.238336	3.964735	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	8056883	8056884	8056883	+	High_confidence	73	73	73	5.446617	5.374622	chr17	8056835	8057031	LTR|ERVK|LTR14	+	chr17	8056895	8062108	MSTRG.11780.1	+	8056895	8062108	0.931507
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	34244698	34244816	34244815	-	High_confidence	7	15	64	4.775116	4.651864	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244698	MSTRG.22345.2	-	34175821,34179012,34182679,34218294,34244615	34175957,34179097,34182867,34218450,34244698	0.796875
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	183123299	183123391	183123347	-	RAMPAGE_only	7	7	42	3.133670	4.612815	chr3	183123276	183123575	SINE|Alu|AluSq2	+	chr3	183122214	183162879	LAMP3|NM_014398.3	-	183122214,183135716,183140537,183152374,183153681,183162606	183124214,183135887,183140595,183152503,183154391,183162879	0.952381
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	54243249	54243287	54243273	-	RAMPAGE_only	3	3	13	0.969945	2.688722	chr1	54243091	54243229	SINE|MIR|MIR3	-	chr1	54226516	54228834	SSBP3|ENST00000528930.5	-	54226516,54228254,54228448,54228747	54227160,54228356,54228477,54228834	0.692308
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	123061174	123061323	123061256	-	High_confidence	12	15	91	6.789618	5.127762	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.967033
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	174410248	174410287	174410248	+	High_confidence	3	3	12	0.895334	2.918296	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.916667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	174874395	174874458	174874418	+	High_confidence	46	53	246	18.354353	6.588453	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.609756
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	114759249	114759277	114759276	-	RAMPAGE_only	15	15	23	1.716057	3.880180	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114703004	114771336	MSTRG.20066.24	-	114703004,114758060	114717527,114771336	0.521739
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	50756920	50756950	50756938	+	High_confidence	4	5	15	1.119168	2.923231	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.733333
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	4239742	4239749	4239748	-	High_confidence	5	7	12	0.895334	2.732159	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.916667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	79556844	79556951	79556885	-	RAMPAGE_only	37	39	174	12.982347	5.263602	chr10	79556846	79556922	SINE|MIR|MIR3	+	chr10	79555851	79559871	SFTPA2|NM_001320814.1	-	79555851,79558051,79558885,79559311,79559674	79557585,79558129,79559005,79559506,79559871	0.988506
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	108431720	108431784	108431754	-	RAMPAGE_only	8	9	47	3.506726	4.780875	chr5	108431090	108431772	LINE|L1|L1PA16	+	chr5	107859032	108382098	FBXL17|NM_001163315.2	-	107859032,107881036,108020924,108186116,108224120,108348398,108364737,108367830,108380698	107861860,107881179,108021001,108186247,108224228,108348530,108364995,108367953,108382098	0.829787
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	15657883	15657884	15657883	+	RAMPAGE_only	4	4	6	0.447667	2.584963	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.666667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	48199390	48199435	48199434	-	RAMPAGE_only	3	3	11	0.820723	2.663533	chr17	48199174	48199607	LINE|L2|L2c	+	chr17	48180091	48185179	SKAP1|ENST00000579336.1	-	48180091,48182393,48184722	48180248,48182457,48185179	0.727273
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73825034	73825124	73825034	-	RAMPAGE_only	6	6	37	2.760614	4.003259	chrX	73825002	73825055	SINE|MIR|MIRc	-	chrX	73823336	73829691	XIST|ENST00000649757.1	-	73823336,73829067	73827984,73829691	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	141699576	141699741	141699740	+	RAMPAGE_only	55	55	150	11.191679	5.379181	chr3	141698964	141700512	LTR|ERV1|HERVFH21-int	-	chr3	141663198	141721074	LOC646730|NR_136190.1	+	141663198,141666779,141681484,141685058,141685871,141690431,141713291,141720991	141663271,141666932,141681633,141685199,141686017,141690527,141713427,141721074	0.760000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	39627120	39627121	39627120	-	High_confidence	98	100	103	7.684953	5.029522	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.932039
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	55161721	55161726	55161721	-	High_confidence	2	2	7	0.522278	2.521641	chrX	55161582	55161821	LINE|L2|L2	+	chrX	55143101	55161310	FAM104B|ENST00000358460.8	-	55143101,55146180,55159128,55161136	55143875,55146311,55159228,55161310	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	147173173	147173250	147173173	+	High_confidence	7	7	42	3.133670	4.689704	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.904762
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	25687993	25688003	25688002	+	RAMPAGE_only	6	6	12	0.895334	2.584963	chr21	25687699	25688081	LINE|L2|L2a	+	chr21	25689865	25714731	JAM2|ENST00000460679.5	+	25689865,25693755,25698676,25702169,25705978,25709433,25711366,25712339,25714639	25689973,25693908,25698879,25702269,25706086,25709449,25711568,25712382,25714731	0.916667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	101823636	101823653	101823652	+	High_confidence	13	13	21	1.566835	3.366091	chr14	101823598	101823757	SINE|MIR|MIRc	-	chr14	101824161	101824478	PPP2R5C|ENST00000607042.1	+	101824161	101824478	0.619048
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	8310227	8310257	8310256	+	High_confidence	9	9	24	1.790669	3.684561	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.958333
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	103890256	103890286	103890285	-	RAMPAGE_only	6	6	16	1.193779	3.323231	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103917669	STN1|ENST00000369764.1	-	103882554,103889071,103892129,103897547,103898876,103900061,103905090,103910526,103917461	103882841,103889144,103892252,103897719,103899000,103900223,103905156,103910622,103917669	0.937500
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	68734197	68734211	68734208	+	RAMPAGE_only	4	4	16	1.193779	3.506891	chr4	68733562	68735166	LINE|L1|L1M3f	-	chr4	68784617	68787474	AC093720.1|ENST00000505681.1	+	68784617,68786049,68786530,68787199	68784749,68786138,68786748,68787474	0.750000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	31119088	31119158	31119088	-	High_confidence	3	5	23	1.716057	3.762267	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.565217
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	93455182	93455220	93455182	+	RAMPAGE_only	13	13	48	3.581337	4.083757	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.958333
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	37149409	37149410	37149409	-	RAMPAGE_only	6	6	8	0.596890	2.500000	chr3	37149319	37149517	SINE|Alu|AluSx	+	chr3	37052889	37174564	LRRFIP2|ENST00000336686.8	-	37052889,37054410,37055085,37058789,37063741,37065809,37066223,37072789,37075023,37083635,37091466,37094791,37096615,37102923,37105454,37108072,37108636,37109526,37109652,37110990,37112914,37115053,37121491,37121634,37127629,37129062,37148893,37174538	37053961,37054515,37055165,37058910,37063791,37065942,37066325,37072882,37075116,37083806,37091538,37094908,37096660,37103013,37105523,37108129,37108684,37109571,37109703,37111065,37112980,37115095,37121536,37121691,37127680,37129149,37149038,37174564	0.875000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	18794063	18794086	18794085	+	High_confidence	27	27	86	6.416562	4.473292	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.988372
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	113873339	113873347	113873339	-	High_confidence	3	3	7	0.522278	2.521641	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.857143
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	7555187	7555188	7555187	-	RAMPAGE_only	16	20	20	1.492224	3.046439	chr7	7555051	7555240	SINE|MIR|MIR	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	26013336	26013350	26013349	+	RAMPAGE_only	19	19	30	2.238336	4.418157	chr13	26013392	26013701	SINE|Alu|AluSq2	+	chr13	25469020	26020287	ATP8A2|ENST00000255283.9	+	25469020,25529998,25530561,25532271,25533272,25537987,25540318,25541918,25543290,25551337,25553792,25554990,25558972,25559720,25563955,25570766,25571609,25571712,25699167,25769045,25774848,25828117,25837162,25839545,25860194,25860803,25862300,25961574,25968574,26012530,26019887	25469121,25530098,25530660,25532317,25533313,25538061,25540388,25542046,25543402,25551503,25553920,25555068,25559061,25559765,25564031,25570872,25571710,25571776,25699345,25769229,25774959,25828192,25837285,25839624,25860256,25860860,25862408,25961663,25968679,26012622,26020287	0.833333
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	72363514	72363557	72363514	-	High_confidence	3	3	15	1.119168	3.182006	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.533333
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	59902004	59902014	59902004	-	RAMPAGE_only	3	3	8	0.596890	2.807355	chr1	59901627	59902222	LINE|L2|L2c	+	chr1	59893315	59913238	CYP2J2|ENST00000492633.5	-	59893315,59900964,59904365,59904870,59907785,59909783,59911607,59912161	59893829,59901103,59904516,59905058,59907927,59909960,59911768,59913238	0.875000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	46341906	46341967	46341906	+	RAMPAGE_only	3	3	18	1.343001	3.454822	chr19	46341630	46341943	SINE|Alu|AluSx1	-	chr19	46303598	46343433	HIF3A|NM_152794.3	+	46303598,46303897,46305244,46308220,46308662,46309150,46312160,46312505,46320442,46321775,46325534,46329206,46331155,46334904,46339524	46303687,46304088,46305390,46308305,46308775,46309359,46312267,46312653,46320561,46321966,46325639,46329478,46331273,46334986,46343433	0.944444
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	85719199	85719323	85719322	+	High_confidence	10	10	53	3.954393	5.132944	chr15	85719357	85719584	SINE|MIR|MIRb	+	chr15	85719211	85749156	MSTRG.9961.28	+	85719211,85721990,85722229,85723071,85727380,85730512,85734991,85735559,85736089,85740221,85741045,85743491,85744627	85719326,85722116,85722347,85727247,85727463,85730707,85735150,85735630,85736134,85740272,85741495,85743825,85749156	0.981132
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	87040212	87040218	87040214	-	RAMPAGE_only	13	28	47	3.506726	4.924597	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.574468
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	51186500	51186537	51186517	-	RAMPAGE_only	3	3	20	1.492224	3.484184	chr12	51186289	51186570	LTR|ERVL-MaLR|MLT1A0	+	chr12	51093755	51173143	TFCP2|NM_005653.4	-	51093755,51095988,51098775,51099654,51101934,51103669,51104154,51106524,51107235,51109120,51110876,51116314,51117670,51118620,51172300	51095278,51096040,51098918,51099779,51102025,51103763,51104203,51106613,51107346,51109273,51110983,51116420,51117747,51118772,51173143	0.750000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	75127262	75127264	75127263	-	RAMPAGE_only	12	16	22	1.641446	3.617810	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.909091
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	59216968	59217009	59216968	-	RAMPAGE_only	12	12	52	3.879782	5.262846	chr5	59216768	59217041	LINE|L2|L2c	+	chr5	58974654	59220219	MSTRG.22534.10	-	58974654,58975656,58976349,58977190,58988492,58989754,58990803,58991831,58993371,59038858,59180594,59185188,59193499,59215776,59216570	58975080,58975839,58976472,58977345,58988592,58989919,58990902,58992004,58993465,59038971,59180644,59185262,59193536,59215968,59220219	0.500000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	55371804	55371830	55371804	-	RAMPAGE_only	2	2	8	0.596890	2.807355	chr15	55371592	55371758	SINE|MIR|MIRb	-	chr15	55358838	55372952	CCPG1|ENST00000568372.5	-	55358838,55365187,55371792	55360944,55365309,55372952	0.875000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	74765425	74765434	74765433	+	RAMPAGE_only	10	10	30	2.238336	3.856565	chr5	74765248	74765602	LINE|L2|L2a	-	chr5	74766990	74776912	NSA2|NM_014886.4	+	74766990,74768930,74769213,74770630,74773867,74776603	74767363,74769118,74769364,74770810,74774060,74776912	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	112703288	112703294	112703293	+	RAMPAGE_only	9	9	17	1.268390	3.625000	chr13	112703103	112703441	LTR|ERVL-MaLR|MLT1A	-	chr13	112690328	112887168	ATP11A|ENST00000375630.6	+	112690328,112785134,112804956,112806212,112810618,112816082,112819303,112819899,112823344,112824343,112825429,112826693,112831374,112832859,112834588,112836177,112842275,112851036,112854278,112855910,112857817,112858144,112859392,112860286,112862439,112871734,112873572,112875775,112881815	112690455,112785257,112805046,112806293,112810726,112816211,112819407,112819950,112823409,112824425,112825580,112826891,112831548,112833023,112834660,112836251,112842379,112851218,112854530,112856085,112857920,112858290,112859452,112860414,112862575,112871800,112873676,112875941,112887168	0.647059
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	102973265	102973266	102973265	-	RAMPAGE_only	14	14	16	1.193779	3.240224	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102813232	103050059	FBXL13|ENST00000436908.5	-	102813232,102822039,102832839,102854776,102877466,102878330,102883304,102883567,102884213,102913085,102926273,102931880,102963532,102968021,103025062,103027448,103028599,103029350,103046808,103050025	102813531,102822203,102832974,102854860,102877593,102878450,102883467,102883685,102884312,102913215,102926374,102931933,102963665,102968117,103025230,103027558,103028748,103029418,103047034,103050059	0.625000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	47067498	47067518	47067498	-	High_confidence	306	320	1000	74.611192	5.799690	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.944000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	47998234	47998266	47998234	+	RAMPAGE_only	5	5	20	1.492224	3.576618	chr8	47995253	47998768	LTR|ERV1|HERVFH21-int	-	chr8	48008399	48064708	UBE2V2|ENST00000523111.6	+	48008399,48043032,48049852,48060681	48008470,48043181,48049978,48064708	0.700000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	28335904	28335973	28335904	-	High_confidence	7	7	29	2.163725	4.237291	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	91179462	91179526	91179462	-	High_confidence	267	271	1343	100.202831	7.012356	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.905436
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	39083046	39083066	39083065	+	RAMPAGE_only	3	4	9	0.671501	3.000000	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39025534	39105001	MSTRG.27123.8	+	39025534,39041945,39054480,39055576,39071297,39077227,39082640,39082967,39090046,39091258,39101862,39103606	39026810,39042117,39054573,39055772,39071403,39077411,39082721,39083073,39090188,39091346,39101930,39105001	0.777778
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	5680240	5680244	5680240	-	High_confidence	3	3	8	0.596890	2.521641	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.875000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	56160926	56160928	56160926	-	High_confidence	3	6	8	0.596890	2.521641	chr5	56160851	56161074	SINE|MIR|MIR	+	chr5	56111577	56160929	ANKRD55|ENST00000505970.2	-	56111577,56114202,56116614,56143800,56156945,56159832,56160787	56111782,56114300,56116782,56143929,56156995,56159893,56160929	0.625000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	218287279	218287316	218287279	-	High_confidence	6	6	15	1.119168	3.373557	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.866667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	56838750	56838769	56838750	-	RAMPAGE_only	3	3	8	0.596890	2.750000	chr17	56838749	56839048	LINE|L1|L1ME2z	+	chr17	56791912	56833896	C17orf67|ENST00000397861.6	-	56791912,56795043,56814868,56815755,56824738,56825080,56832897,56833617	56792352,56795180,56814969,56816010,56824853,56825321,56833342,56833896	0.625000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	86453139	86453197	86453195	-	High_confidence	14	25	125	9.326399	5.434367	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016074	86453196	MAPK10|ENST00000641854.1	-	86016074,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86107352,86159467,86194407,86354644,86453196	0.712000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	42022023	42022030	42022029	+	High_confidence	10	10	18	1.343001	3.266333	chr21	42022002	42022069	LTR|ERVL|MER54A	-	chr21	42022022	42024866	ZNF295-AS1|ENST00000455701.1	+	42022022,42024305	42022211,42024866	0.944444
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	80059915	80059933	80059918	+	High_confidence	77	87	197	14.698405	5.144687	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.964467
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	67490861	67490869	67490861	-	High_confidence	10	10	18	1.343001	2.885513	chr5	67490503	67490858	LTR|ERVL-MaLR|THE1A	-	chr5	67455318	67490905	MSTRG.22588.1	-	67455318,67466872,67467905,67490579	67465327,67466938,67468053,67490905	0.944444
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	59619888	59619923	59619894	+	High_confidence	298	358	1183	88.265040	6.210197	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.905325
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	43490761	43490777	43490761	-	RAMPAGE_only	4	4	13	0.969945	2.855389	chr3	43490741	43491230	LTR|ERV1|MER50	+	chr3	43366347	43621965	ANO10|ENST00000350459.8	-	43366347,43432610,43549719,43555277,43561219,43565652,43574808,43580352,43598531,43600383,43605713,43621908	43366974,43432727,43549848,43555469,43561402,43565727,43574864,43580472,43598666,43600581,43605863,43621965	0.692308
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	32527414	32527450	32527432	-	RAMPAGE_only	4	4	14	1.044557	2.719295	chr13	32527156	32527383	SINE|MIR|MIRc	-	chr13	32443965	32535869	MSTRG.7380.25	-	32443965,32480589,32517856,32521372,32522181	32444126,32480637,32518003,32521449,32535869	0.642857
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	997318	997343	997318	-	High_confidence	8	8	16	1.193779	2.524397	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	27224076	27224108	27224107	+	RAMPAGE_only	4	4	17	1.268390	3.250000	chr18	27223626	27224373	LINE|L1|L1PB1	-	chr18	27225741	27247188	LINC01908|ENST00000583148.1	+	27225741,27234921,27235607,27243612,27247040	27225961,27235002,27235659,27243666,27247188	0.529412
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	64171341	64171361	64171341	-	High_confidence	11	11	46	3.432115	4.836080	chr1	64171135	64171478	LTR|ERVL-MaLR|THE1B	-	chr1	64105321	64171297	ROR1-AS1|ENST00000424995.1	-	64105321,64110649,64110882,64113628,64171208	64107039,64110793,64110957,64113791,64171297	0.565217
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	117442523	117442568	117442523	-	RAMPAGE_only	53	55	101	7.535730	4.869213	chr6	117442358	117442707	LTR|ERVL-MaLR|THE1B	-	chr6	117288299	117425855	ROS1|ENST00000368507.7	-	117288299,117300973,117308793,117310080,117311019,117317142,117318187,117319867,117321258,117324331,117326223,117329328,117337171,117341134,117341399,117342399,117344059,117352989,117356628,117357803,117359808,117360341,117362602,117365059,117365580,117366075,117379058,117383316,117385682,117386888,117387779,117389349,117393223,117394161,117394615,117396187,117396914,117403138,117404279,117409581,117414518,117416257,117418461,117425533	117288802,117301137,117308928,117310281,117311117,117317272,117318252,117320030,117321394,117324415,117326414,117329446,117337340,117341311,117341632,117342544,117344262,117353166,117356915,117358009,117360011,117360405,117362865,117365204,117365741,117366290,117379159,117383508,117385861,117386999,117387992,117389846,117393321,117394346,117394738,117396264,117397116,117403277,117404428,117409642,117414545,117416317,117418506,117425855	0.871287
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	89272820	89272868	89272854	-	High_confidence	16	16	81	6.043507	5.137577	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.950617
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	147839227	147839240	147839237	-	High_confidence	10	11	25	1.865280	3.619471	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.880000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	123163320	123163321	123163320	-	High_confidence	4	4	7	0.522278	2.584963	chr12	123163206	123163336	LINE|L1|L1ME4a	-	chr12	123156398	123163026	MPHOSPH9|ENST00000545974.5	-	123156398,123160780,123161135,123162114	123156908,123160849,123161383,123163026	0.714286
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	159005961	159005962	159005961	+	High_confidence	29	29	38	2.835225	4.019742	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.763158
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	75611178	75611200	75611178	+	High_confidence	6	6	16	1.193779	3.000000	chr5	75610835	75611347	Retroposon|SVA|SVA_A	-	chr5	75611458	75671846	ANKDD1B|ENST00000601380.2	+	75611458,75616803,75620314,75625646,75625850,75634897,75635783,75653141,75656028,75659282,75663393,75666791,75669251,75670978	75611827,75616907,75620413,75625745,75625955,75634996,75635882,75653240,75656127,75659381,75663489,75666993,75669383,75671846	0.812500
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	206161460	206161467	206161465	+	High_confidence	6	9	16	1.193779	3.250000	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	13606485	13606510	13606509	+	RAMPAGE_only	5	5	20	1.492224	3.384184	chrX	13606482	13606534	LINE|RTE-BovB|MamRTE1	-	chrX	13569621	13633575	EGFL6|ENST00000380602.3	+	13569621,13589555,13594835,13599974,13603316,13606378,13608323,13617729,13619162,13623820,13627010,13632984	13569935,13589668,13594928,13600094,13603436,13606513,13608446,13618053,13619243,13623925,13627276,13633575	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	120823009	120823010	120823009	-	RAMPAGE_only	13	13	17	1.268390	3.454822	chr7	120822893	120823869	LINE|L1|HAL1	+	chr7	120788321	120838797	TSPAN12|ENST00000450414.5	-	120788321,120806548,120810462,120814004,120815728,120838776	120788897,120806692,120810570,120814247,120815803,120838797	0.941176
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	39387780	39387801	39387780	+	High_confidence	5	5	10	0.746112	3.121928	chr3	39387553	39387832	LINE|L2|L2	-	chr3	39388369	39390509	SLC25A38|ENST00000642442.1	+	39388369,39389361,39389494,39390422	39388471,39389389,39389616,39390509	0.500000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	65570509	65570540	65570519	+	High_confidence	31	40	155	11.564735	6.250106	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.541935
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	50131135	50131144	50131139	-	High_confidence	8	8	20	1.492224	3.281373	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.950000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	109581048	109581076	109581048	-	High_confidence	10	10	27	2.014502	3.323074	chr8	109580602	109581257	LINE|L2|L2c	+	chr8	109575974	109581058	SYBU|ENST00000527707.5	-	109575974,109577867,109579798,109580878	109576013,109578017,109580002,109581058	0.851852
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	761096	761120	761114	+	High_confidence	62	75	240	17.906686	5.728104	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.945833
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	3795750	3795789	3795788	+	High_confidence	12	13	82	6.118118	5.055675	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.975610
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	79631273	79631329	79631302	+	High_confidence	42	42	271	20.219633	5.725422	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.952030
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	131325835	131325876	131325835	-	RAMPAGE_only	2	2	12	0.895334	3.277613	chr6	131323748	131326796	LTR|ERV1|HERVH-int	+	chr6	131258710	131327040	MSTRG.24816.2	-	131258710,131263230,131314737	131261201,131314618,131327040	0.583333
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	8158167	8158181	8158167	+	RAMPAGE_only	4	5	21	1.566835	3.975418	chr6	8157724	8158272	LTR|ERV1|LTR49	-	chr6	8195575	8342495	AL355499.1|ENST00000439891.3	+	8195575,8230113,8238930,8307452,8328004,8329654,8342324	8195635,8230273,8239016,8307560,8328277,8329923,8342495	0.619048
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	106561950	106561951	106561950	-	RAMPAGE_only	10	10	10	0.746112	2.921928	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543326	106568137	ARGLU1|ENST00000472226.2	-	106543326,106557047,106567572	106544160,106559657,106568137	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	80148048	80148049	80148048	+	High_confidence	21	21	24	1.790669	4.084963	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.666667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	85658345	85658823	85658697	-	RAMPAGE_only	86	91	642	47.900385	6.617605	chr2	85658497	85658822	SINE|Alu|AluSz	-	chr2	85658289	85663547	MSTRG.16104.6	-	85658289,85661453,85662028,85663345	85658855,85661535,85662279,85663547	0.697819
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	34022630	34022662	34022661	+	RAMPAGE_only	5	6	20	1.492224	3.784184	chr20	34022680	34022788	SINE|MIR|MIR3	+	chr20	34029860	34077129	RALY|ENST00000442805.1	+	34029860,34031521,34072065,34073562,34075873,34076701,34077027	34029927,34031604,34072330,34073635,34076040,34076815,34077129	0.750000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	40753612	40753622	40753613	-	RAMPAGE_only	6	9	16	1.193779	3.373557	chr13	40753514	40753882	LTR|ERVL|LTR57	+	chr13	40729295	40749613	MRPS31|ENST00000498078.1	-	40729295,40749137	40729601,40749613	0.500000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	2331477	2331480	2331479	-	RAMPAGE_only	41	53	70	5.222783	5.371861	chr16	2331202	2331498	SINE|Alu|AluSz6	-	chr16	2323338	2329724	ABCA3|ENST00000567910.1	-	2323338,2324403,2326009,2326412,2328452,2329647	2323688,2324531,2326274,2326492,2328757,2329724	0.571429
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	43704037	43704040	43704037	+	RAMPAGE_only	6	9	17	1.268390	2.698660	chr2	43704069	43704379	LINE|L1|L1MB2	+	chr2	43637307	43765792	PLEKHH2|ENST00000405000.6	+	43637307,43644670,43658665,43678862,43692513,43694430,43695142,43697170,43699646,43703980,43706321,43707400,43709989,43710219,43710488,43720668,43726271,43729636,43731489,43738340,43740945,43742740,43743833,43745865,43753618,43757118,43758899,43762303,43764227,43765412	43637379,43644796,43658867,43678925,43692663,43694514,43695224,43697356,43700608,43704056,43706416,43707545,43710126,43710330,43712383,43720749,43726451,43729745,43731602,43738520,43741126,43742918,43743989,43745963,43753760,43757264,43759029,43762390,43764365,43765792	0.882353
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	200857708	200857746	200857708	-	High_confidence	4	4	13	0.969945	2.931209	chr2	200857615	200857696	LINE|L1|L1MA8	-	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.538462
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	134485443	134485490	134485455	-	High_confidence	8	8	50	3.730560	4.496936	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.980000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	35449700	35449732	35449700	+	RAMPAGE_only	4	4	16	1.193779	3.323231	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.750000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	30	30	30	2.238336	3.352584	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	27224161	27224194	27224161	+	RAMPAGE_only	2	2	10	0.746112	3.121928	chr18	27223626	27224373	LINE|L1|L1PB1	-	chr18	27225741	27247188	LINC01908|ENST00000583148.1	+	27225741,27234921,27235607,27243612,27247040	27225961,27235002,27235659,27243666,27247188	0.800000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	24930628	24930666	24930639	+	High_confidence	46	46	194	14.474571	5.452954	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930624	24932983	MSTRG.17679.1	+	24930624,24931346	24930774,24932983	0.963918
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	48492783	48492791	48492783	-	High_confidence	13	14	38	2.835225	4.499598	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.921053
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	4143199	4143215	4143199	+	High_confidence	67	68	180	13.430015	5.358331	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.944444
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	116765835	116765836	116765835	-	High_confidence	13	14	16	1.193779	3.189898	chr6	116765800	116765984	LINE|CR1|L3	-	chr6	116752196	116765723	FAM162B|ENST00000368557.5	-	116752196,116761976,116765146,116765404	116752695,116762085,116765255,116765723	0.875000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	8697182	8697196	8697195	+	High_confidence	6	9	23	1.716057	3.795089	chr12	8697043	8697239	SINE|MIR|MIRc	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.913043
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	32927967	32927977	32927976	+	High_confidence	93	103	185	13.803070	6.161881	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927968	33044802	MSTRG.27070.1	+	32927968,32996200,33041634,33044366	32928093,32996316,33041771,33044802	0.740541
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	41359605	41359607	41359606	+	High_confidence	345	403	571	42.602990	5.802150	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.726795
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	81170403	81170427	81170419	-	High_confidence	9	9	32	2.387558	4.476410	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.968750
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	70590313	70590329	70590328	+	RAMPAGE_only	5	5	12	0.895334	3.418296	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.750000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	52964807	52964814	52964813	+	RAMPAGE_only	4	4	13	0.969945	3.251629	chr18	52964689	52965201	LTR|ERVL-MaLR|MLT1D	-	chr18	52934771	53530592	DCC|ENST00000581580.5	+	52934771,52965030,53063304,53066045,53157355,53178961,53205215,53207678,53215547,53305577,53322046,53339712,53386042,53391714,53397307,53402785,53410451,53416123,53435143,53450499,53459231,53467893,53486796,53499297,53526616,53530346,53530563	52934890,52965126,53063459,53066166,53157512,53179116,53205364,53207817,53215597,53305719,53322157,53339907,53386138,53391887,53397446,53402893,53410646,53416156,53435209,53450662,53459458,53468010,53486952,53499510,53526759,53530416,53530592	0.846154
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	22082526	22082527	22082526	-	RAMPAGE_only	5	5	8	0.596890	2.500000	chr12	22082443	22082846	LTR|ERVL|LTR16A	+	chr12	22063772	22070613	ST8SIA1|ENST00000536535.1	-	22063772,22066344,22068862,22070571	22063927,22066435,22069020,22070613	0.875000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	34586235	34586266	34586235	-	RAMPAGE_only	6	6	12	0.895334	2.663533	chr14	34585901	34586200	SINE|Alu|AluSg	-	chr14	34561093	34630109	SNX6|ENST00000396526.7	-	34561093,34567685,34567853,34575755,34581560,34586229,34593044,34597549,34603347,34605595,34608029,34609637,34629906	34563175,34567771,34568013,34575842,34581600,34586305,34593150,34597645,34603471,34605717,34608140,34609742,34630109	0.916667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	166849991	166850016	166850015	+	RAMPAGE_only	8	8	18	1.343001	3.454822	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.944444
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	102431237	102431271	102431247	-	High_confidence	30	35	115	8.580287	5.468107	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.782609
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	20750350	20750382	20750350	-	RAMPAGE_only	12	12	57	4.252838	4.641379	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746922	20755250	AC010329.1|ENST00000593903.1	-	20746922	20755250	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	55618850	55618895	55618850	-	High_confidence	9	9	26	1.939891	4.403856	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.923077
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	34988752	34988785	34988767	-	High_confidence	4	5	12	0.895334	3.095795	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.916667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	77129077	77129078	77129077	+	High_confidence	1003	1329	1358	101.321998	5.721698	chr1	77128993	77129084	DNA|hAT-Charlie|MER58B	+	chr1	77129113	77129668	AC113935.1|ENST00000471722.1	+	77129113	77129668	0.869661
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	41457412	41457413	41457412	-	RAMPAGE_only	11	12	16	1.193779	2.999581	chr19	41457330	41457753	LTR|ERVL|MER21-int	-	chr19	41454168	41500644	PCAT19|ENST00000588495.5	-	41454168,41479080,41494539,41500583	41456487,41479284,41495427,41500644	0.812500
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	76551108	76551127	76551126	-	High_confidence	5	5	10	0.746112	2.947703	chr17	76550828	76551081	SINE|MIR|MIRb	-	chr17	76528533	76551175	CYGB|ENST00000589145.1	-	76528533,76530978,76531459,76550861	76528611,76531142,76531691,76551175	0.700000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	100268280	100268281	100268280	+	RAMPAGE_only	10	10	14	1.044557	2.873141	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266288	100291771	MSTRG.1384.5	+	100266288,100266523,100268073,100270556,100273393,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100268295,100270680,100274965,100275723,100277316,100285322,100287203,100291771	0.785714
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	19821239	19821242	19821239	+	High_confidence	2	4	9	0.671501	2.725481	chr8	19821161	19821436	LTR|ERVL-MaLR|MLT1C	-	chr8	19820948	19824492	INTS10|ENST00000522081.1	+	19820948,19823300,19823872	19822520,19823441,19824492	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	32403115	32403169	32403148	-	RAMPAGE_only	10	12	46	3.432115	4.294646	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.978261
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	183178938	183178939	183178938	-	RAMPAGE_only	5	5	7	0.522278	2.584963	chr3	183178904	183179130	DNA|hAT-Charlie|MER20	+	chr3	183153900	183163839	LAMP3|ENST00000476015.1	-	183153900,183162606,183163619	183154391,183162730,183163839	0.857143
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	191245190	191245219	191245211	+	High_confidence	2	2	8	0.596890	2.521641	chr2	191245108	191245343	LINE|L1|L1M4b	+	chr2	191245184	191346274	MYO1B|ENST00000418908.5	+	191245184,191276886,191296110,191329934,191341460,191346235	191245257,191277030,191296226,191330029,191341565,191346274	0.875000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	760924	760957	760924	+	High_confidence	5	6	18	1.343001	3.572431	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	29735222	29735223	29735222	-	RAMPAGE_only	12	12	14	1.044557	3.521641	chr8	29735013	29735262	SINE|MIR|MIR	-	chr8	29721253	29748109	LINC00589|ENST00000506121.3	-	29721253,29724876,29726155,29748014	29722151,29725019,29726423,29748109	0.785714
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	115967631	115967652	115967651	-	RAMPAGE_only	7	9	16	1.193779	3.125000	chrX	115967540	115967655	LINE|L1|L1ME4b	+	chrX	115889021	115969145	MSTRG.29646.2	-	115889021,115916602,115951837	115916544,115951817,115969145	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	103181328	103181329	103181328	-	RAMPAGE_only	22	22	22	1.641446	3.970573	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103098970	103174982	MSTRG.3824.11	-	103098970,103099925,103100751,103101044,103101234,103105705,103106588,103111744,103139405,103174857	103098984,103100019,103100943,103101102,103101326,103105801,103106706,103111805,103139479,103174982	0.681818
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	140334968	140334988	140334968	+	RAMPAGE_only	5	5	10	0.746112	2.921928	chr3	140334833	140335165	LTR|ERVL|LTR86B2	+	chr3	139935186	140557055	CLSTN2|ENST00000511524.1	+	139935186,140175950,140403628,140404557,140421124,140448518,140459520,140466609,140532323,140546514,140556512	139935483,140176073,140403824,140404766,140421274,140448704,140459769,140466731,140532486,140546681,140557055	0.500000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	97904654	97904665	97904654	-	RAMPAGE_only	19	24	41	3.059059	4.168408	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.512195
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	160187371	160187413	160187402	+	High_confidence	41	56	264	19.697355	5.620165	chr5	160187374	160187670	LINE|L2|L2b	-	chr5	160187366	160238735	FABP6|ENST00000393980.8	+	160187366,160199048,160213735,160229545,160232097,160234819,160238605	160187454,160199157,160213819,160229624,160232273,160234909,160238735	0.977273
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	59216878	59216912	59216878	-	RAMPAGE_only	4	4	17	1.268390	3.381580	chr5	59216768	59217041	LINE|L2|L2c	+	chr5	58974654	59220219	MSTRG.22534.10	-	58974654,58975656,58976349,58977190,58988492,58989754,58990803,58991831,58993371,59038858,59180594,59185188,59193499,59215776,59216570	58975080,58975839,58976472,58977345,58988592,58989919,58990902,58992004,58993465,59038971,59180644,59185262,59193536,59215968,59220219	0.705882
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	170226573	170226588	170226587	+	High_confidence	22	24	41	3.059059	4.506825	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.780488
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	81192681	81192710	81192681	-	RAMPAGE_only	3	3	11	0.820723	3.095795	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.909091
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	183630113	183630136	183630135	+	RAMPAGE_only	9	9	19	1.417613	3.681881	chr3	183630102	183630275	LTR|ERV1?|LTR103b_Mam	+	chr3	183635567	183679478	KLHL24|ENST00000242810.10	+	183635567,183643479,183650295,183663457,183664920,183671033,183672295,183679085	183635793,183643542,183651276,183663642,183665039,183671222,183672484,183679478	0.842105
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	110440319	110440378	110440319	-	RAMPAGE_only	3	3	18	1.343001	3.616875	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.888889
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	9192492	9192539	9192492	+	High_confidence	64	65	130	9.699455	5.664525	chr3	9192123	9192754	LTR|ERVL|MER77	+	chr3	9192492	9194453	LOC101927416|NR_121663.1	+	9192492,9193428,9193725	9192995,9193490,9194453	0.976923
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	18170464	18170499	18170471	+	High_confidence	5	5	17	1.268390	2.780639	chr8	18170361	18170677	LTR|ERV1|MER57C1	+	chr8	18170476	18222754	NAT1|ENST00000517441.5	+	18170476,18170678,18209780,18219410,18222041	18170507,18170739,18209955,18219489,18222754	0.823529
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	69122993	69123047	69123045	+	High_confidence	2	4	10	0.746112	2.725481	chr9	69122999	69123107	DNA|hAT-Charlie|MER5A1	+	chr9	69123047	69246746	TJP2|ENST00000647986.1	+	69123047,69151650,69185086,69212547,69216338,69218256,69220886,69225303,69226021,69227764,69227980,69229183,69230081,69234438,69236027,69236948,69237877,69238709,69239936,69246689	69123113,69151771,69185204,69212601,69216463,69218359,69221496,69225407,69226175,69227873,69228114,69229250,69230232,69234547,69236238,69237136,69237973,69238789,69240147,69246746	0.900000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	19393876	19393894	19393876	-	RAMPAGE_only	70	72	145	10.818623	5.301302	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19343646	19401693	AC130456.2|ENST00000563613.1	-	19343646,19367810,19393375,19395982,19401439	19344823,19367877,19393547,19396249,19401693	0.531034
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	31587190	31587202	31587201	+	High_confidence	15	19	41	3.059059	4.464390	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.902439
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	17895504	17895515	17895511	-	High_confidence	10	12	28	2.089113	4.593069	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.928571
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	32446972	32446997	32446977	+	High_confidence	10	11	23	1.716057	3.720129	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.826087
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	193656716	193656758	193656716	+	RAMPAGE_only	26	27	78	5.819673	5.510962	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193638018	193697800	OPA1|ENST00000646544.1	+	193638018,193642764,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193638065,193642845,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193697800	0.987179
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	57300329	57300344	57300343	+	High_confidence	3	3	10	0.746112	2.947703	chr15	57300291	57300572	SINE|Alu|AluSg	-	chr15	57300364	57307761	LINC00926|ENST00000501726.1	+	57300364,57305318,57307541	57300924,57307068,57307761	0.800000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	69237146	69237180	69237179	-	RAMPAGE_only	2	2	7	0.522278	2.807355	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.714286
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	65285133	65285134	65285133	+	RAMPAGE_only	4	5	7	0.522278	2.521641	chr14	65284944	65285417	LTR|ERVL-MaLR|MLT1C	+	chr14	65410591	65744121	FUT8|NM_178156.2	+	65410591,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65411993,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65744121	0.714286
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	28291847	28291848	28291847	+	High_confidence	13	14	16	1.193779	3.750000	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.500000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	193506779	193506780	193506779	+	RAMPAGE_only	221	221	223	16.638296	6.486192	chr3	193506586	193506961	LTR|ERVL-MaLR|THE1C	+	chr3	193553212	193555584	ATP13A4-AS1|NR_121666.1	+	193553212,193554769	193553287,193555584	0.811659
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	26551764	26551786	26551785	+	High_confidence	5	5	10	0.746112	3.121928	chr7	26551639	26551841	SINE|MIR|MIR	-	chr7	26551821	26557200	AC004947.1|ENST00000420912.1	+	26551821,26554808	26552210,26557200	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	84368693	84368699	84368698	-	High_confidence	12	12	24	1.790669	4.168296	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.541667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	8251937	8251938	8251937	+	High_confidence	43	43	44	3.282892	4.440070	chr1	8251955	8252041	DNA|hAT-Tip100|MER45A	+	chr1	8251939	8253348	MSTRG.203.1	+	8251939	8253348	0.977273
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	1655409	1655411	1655410	-	RAMPAGE_only	20	25	34	2.536781	4.292770	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	147871183	147871320	147871319	+	High_confidence	17	17	165	12.310847	5.116150	chr5	147871298	147874075	LTR|ERV1|HERVH-int	-	chr5	147871497	147882190	SCGB3A2|ENST00000507160.5	+	147871497,147881445,147882026	147871679,147881648,147882190	0.866667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	140633660	140633673	140633672	-	High_confidence	3	4	7	0.522278	2.521641	chr5	140633624	140633721	LINE|CR1|L3	+	chr5	140632343	140633651	CD14|ENST00000498971.6	-	140632343,140633068,140633530	140632980,140633192,140633651	0.571429
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	139344535	139344548	139344547	+	High_confidence	47	47	107	7.983398	5.080899	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.962617
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	57961647	57961650	57961647	+	High_confidence	6	6	14	1.044557	3.093069	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961656	58096507	AL445250.1|ENST00000641829.1	+	57961656,57962180,57965516,57971594,58027671,58043434,58091903,58095770	57961742,57962248,57965743,57971656,58027723,58043527,58092113,58096507	0.571429
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	91883349	91883350	91883349	-	RAMPAGE_only	8	9	12	0.895334	2.913977	chr14	91883123	91883337	LINE|CR1|L3	-	chr14	91870226	91878042	FBLN5|ENST00000554121.2	-	91870226,91877486,91877927	91870385,91877682,91878042	0.750000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	33931126	33931156	33931154	+	High_confidence	4	8	15	1.119168	2.789898	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.733333
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	55457549	55457579	55457578	-	RAMPAGE_only	3	3	9	0.671501	2.641604	chr15	55456476	55458791	LINE|L1|L1PB1	+	chr15	55430307	55498377	DNAAF4|ENST00000457155.6	-	55430307,55434904,55439471,55450221,55466929,55491122,55497711,55498206	55430779,55435058,55439581,55450367,55467161,55491256,55497859,55498377	0.888889
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	50372863	50372912	50372863	+	RAMPAGE_only	4	4	18	1.343001	3.794653	chr19	50372845	50372986	SINE|Alu|AluSc	-	chr19	50376422	50383028	NR1H2|NM_007121.5	+	50376422,50376718,50377586,50377732,50378148,50378521,50379001,50379779,50381965,50382455	50376576,50376826,50377648,50377870,50378439,50378796,50379181,50379879,50382174,50383028	0.666667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	14653390	14653391	14653390	-	High_confidence	24	24	24	1.790669	3.688722	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	122127024	122127025	122127024	+	RAMPAGE_only	186	187	198	14.773016	5.418423	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122021935	122254540	TACC2|ENST00000334433.7	+	122021935,122050437,122082646,122088477,122132608,122143571,122195039,122210396,122215390,122216626,122224725,122226365,122227836,122229345,122230350,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122022014,122050550,122087959,122088591,122132734,122143706,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122229486,122230440,122237538,122238037,122242001,122248803,122249156,122249664,122254540	0.510101
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	9567425	9567436	9567425	+	RAMPAGE_only	2	2	6	0.447667	2.584963	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9557313	9576275	AC092821.1|ENST00000520314.2	+	9557313,9558368,9559174,9560109,9560816,9565091,9567489,9570765,9571460,9573002,9573465,9574846	9557580,9558452,9559348,9560191,9564325,9565303,9569202,9570892,9571573,9573093,9573534,9576275	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	39809858	39809898	39809858	-	High_confidence	10	13	32	2.387558	3.475909	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.843750
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	71745875	71745936	71745935	+	High_confidence	63	66	270	20.145022	6.074867	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.937037
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	39810023	39810084	39810033	-	High_confidence	19	19	103	7.684953	5.387185	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.601942
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	51027642	51027673	51027667	-	High_confidence	13	13	27	2.014502	3.750465	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.703704
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	17208540	17208564	17208540	+	RAMPAGE_only	2	2	9	0.671501	2.503258	chr11	17208523	17208605	SINE|MIR|MIRc	-	chr11	17260339	17349980	NUCB2|ENST00000646648.1	+	17260339,17269184,17276007,17282788,17295323,17296103,17301743,17309571,17310824,17311184,17311871,17312027,17315385,17330126,17330901,17337347,17349344	17260501,17269331,17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17337534,17349980	0.555556
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	119420416	119420465	119420464	+	RAMPAGE_only	4	4	16	1.193779	3.106891	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.812500
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	16712879	16712959	16712889	-	High_confidence	22	23	92	6.864230	5.643738	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.902174
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	154928503	154928515	154928503	+	High_confidence	41	41	68	5.073561	5.106915	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.911765
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	160371585	160371587	160371585	-	RAMPAGE_only	9	15	20	1.492224	3.536887	chr3	160371451	160371741	SINE|Alu|AluJb	-	chr3	160256991	160383656	IFT80|ENST00000483465.5	-	160256991,160268412,160277305,160277580,160279192,160280666,160282477,160285803,160300882,160303914,160307662,160319759,160356012,160357488,160366042,160375811,160377429,160381502,160383436	160258635,160268536,160277478,160277670,160279364,160280814,160282613,160285868,160301046,160303989,160307781,160319939,160356150,160357578,160366152,160375880,160377540,160381718,160383656	0.900000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	36807868	36807870	36807869	-	RAMPAGE_only	4	6	8	0.596890	2.750000	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796071	36828963	TPGS2|ENST00000593035.5	-	36796071,36798448,36800197,36805373,36807846,36818893,36828682	36797050,36798609,36800311,36805397,36807934,36818973,36828963	0.750000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	21200804	21200844	21200825	+	High_confidence	15	15	42	3.133670	4.814587	chr6	21200835	21201081	LINE|L1|L1MC3	+	chr6	21200811	21231441	CDKAL1|ENST00000476517.1	+	21200811,21201109,21230847	21200892,21201274,21231441	0.976190
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	143521213	143521248	143521213	+	RAMPAGE_only	3	3	9	0.671501	3.000000	chr4	143521014	143521353	LINE|L1|L1ME1	-	chr4	143513619	143557484	MSTRG.21872.2	+	143513619,143517354,143521428,143524366,143525450,143526280,143527867,143528582,143530457,143534854,143536451,143538589,143538785,143540362,143543508,143543852,143545924,143546775,143547384,143547927,143553118	143514101,143517429,143521595,143524467,143525551,143526460,143528023,143528714,143530526,143534964,143536678,143538711,143538938,143540495,143543657,143545583,143546047,143546908,143547503,143550104,143557484	0.777778
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	66133986	66133996	66133986	-	High_confidence	101	109	181	13.504626	5.928936	chr16	66133959	66134013	LINE|L2|L2b	-	chr16	66109762	66134170	MSTRG.11077.1	-	66109762,66133765	66132031,66134170	0.745856
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	12927723	12927741	12927733	+	High_confidence	51	53	132	9.848677	6.434323	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.719697
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	15006394	15006395	15006394	+	RAMPAGE_only	9	9	9	0.671501	2.947703	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.777778
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73824449	73824556	73824501	-	RAMPAGE_only	30	30	132	9.848677	4.048834	chrX	73824472	73824516	LINE|L2|L2b	+	chrX	73823336	73829691	XIST|ENST00000649757.1	-	73823336,73829067	73827984,73829691	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	29193456	29193460	29193459	+	High_confidence	18	26	41	3.059059	3.560964	chr21	29193019	29193674	LTR|ERV1|MER50B	+	chr21	29193493	29288205	LINC00189|NR_027072.2	+	29193493,29287983	29194260,29288205	0.902439
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	137254933	137254959	137254940	-	RAMPAGE_only	6	7	17	1.268390	2.727217	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.941176
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	2330626	2330658	2330657	-	High_confidence	6	7	29	2.163725	3.948859	chr16	2330319	2330618	SINE|Alu|AluSq	-	chr16	2323338	2329724	ABCA3|ENST00000567910.1	-	2323338,2324403,2326009,2326412,2328452,2329647	2323688,2324531,2326274,2326492,2328757,2329724	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	7905910	7905926	7905925	-	High_confidence	43	46	74	5.521228	5.291668	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7825036	7905955	MSTRG.4250.9	-	7825036,7849337,7852272,7879006,7879594,7881088,7881955,7882859,7905602	7831313,7849476,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.635135
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	21662312	21662313	21662312	+	High_confidence	26	27	34	2.536781	3.973513	chr12	21661347	21662731	LTR|ERV1|LTR12C	+	chr12	21662312	21782118	MSTRG.6022.1	+	21662312,21759913,21766355	21662771,21760085,21782118	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	67490695	67490741	67490718	-	High_confidence	17	17	119	8.878732	5.498945	chr5	67490503	67490858	LTR|ERVL-MaLR|THE1A	-	chr5	67455318	67490905	MSTRG.22588.1	-	67455318,67466872,67467905,67490579	67465327,67466938,67468053,67490905	0.789916
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73837439	73837467	73837439	-	RAMPAGE_only	10	10	31	2.312947	3.139207	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	156012334	156012347	156012334	-	High_confidence	5	5	12	0.895334	3.277613	chr1	156012306	156012401	SINE|MIR|MIRc	+	chr1	156009048	156013040	SSR2|ENST00000472467.1	-	156009048,156011809	156009650,156013040	0.916667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	9986898	9986905	9986898	+	High_confidence	8	8	18	1.343001	3.734522	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.500000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	1770479	1770508	1770479	+	High_confidence	4	4	16	1.193779	3.452820	chr17	1770450	1770759	SINE|Alu|AluSx1	-	chr17	1770525	1772032	SERPINF1|ENST00000570820.1	+	1770525,1771871	1771184,1772032	0.937500
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	73080369	73080370	73080369	-	High_confidence	7	7	7	0.522278	2.807355	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.857143
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	157273784	157273797	157273788	+	RAMPAGE_only	3	3	10	0.746112	2.921928	chr1	157273297	157273792	LTR|ERV1|LTR21A	-	chr1	157280715	157283068	AL138900.3|ENST00000607010.1	+	157280715,157282577	157280853,157283068	0.800000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	94683463	94683484	94683483	+	High_confidence	5	5	10	0.746112	3.169925	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_001128925.1	+	94683493,94687769,94688124,94694916,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94720537,94724533,94733438,94736190	0.900000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	127642428	127642461	127642428	+	High_confidence	93	98	263	19.622743	6.130581	chr9	127642433	127642559	LINE|CR1|L3	+	chr9	127642342	127663258	STXBP1|ENST00000626333.1	+	127642342,127651602,127653714,127658374,127660029,127661101,127663204	127642563,127651652,127653796,127658451,127660108,127661205,127663258	0.669202
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	7913248	7913268	7913248	-	RAMPAGE_only	32	32	60	4.476672	4.735813	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7847611	7853491	UTS2|NM_021995.2	-	7847611,7849639,7850811,7852900,7853306	7847882,7849683,7850922,7852923,7853491	0.700000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	6582146	6582178	6582146	-	High_confidence	2	2	8	0.596890	2.750000	chr12	6581880	6582102	SINE|Alu|AluSx1	-	chr12	6570190	6581343	CHD4|ENST00000644652.1	-	6570190,6570868,6573073,6577784,6578028,6578408,6578845,6580581,6581043,6581290	6570693,6571032,6573269,6577917,6578137,6578546,6578917,6580699,6581173,6581343	0.625000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	43013392	43013393	43013392	-	High_confidence	9	9	12	0.895334	3.251629	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	156324974	156325055	156324974	-	High_confidence	2	2	17	1.268390	3.327820	chr1	156324638	156324926	SINE|Alu|AluSc5	-	chr1	156308991	156325089	CCT3|ENST00000368261.7	-	156308991,156310557,156317535,156318867,156320838,156324971	156309303,156310641,156317547,156319017,156321025,156325089	0.705882
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	92536601	92536704	92536703	-	High_confidence	19	24	104	7.759564	5.314375	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.875000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	29077476	29077512	29077486	+	High_confidence	16	16	49	3.655948	4.818392	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.510204
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	3062920	3062940	3062939	-	High_confidence	4	5	10	0.746112	2.721928	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	82636724	82636725	82636724	-	High_confidence	7	7	8	0.596890	2.521641	chr17	82636641	82637170	LTR|ERV1|LTR10G	+	chr17	82616014	82636583	WDR45B|ENST00000571835.5	-	82616014,82616523,82617295,82619042,82621608,82625388,82627203,82630920,82636511	82616025,82616645,82617397,82619128,82621799,82625483,82627291,82631022,82636583	0.750000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	2990740	2990749	2990748	-	RAMPAGE_only	16	18	58	4.327449	3.498210	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.965517
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	643625	643636	643627	-	High_confidence	21	37	61	4.551283	4.431001	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.967213
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	19393734	19393735	19393734	-	High_confidence	194	195	236	17.608241	6.204812	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19392212	19393468	AC130456.7|ENST00000623838.1	-	19392212	19393468	0.512712
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	51526006	51526031	51526030	-	RAMPAGE_only	8	8	15	1.119168	3.323231	chr20	51525529	51526222	LINE|L2|L2b	+	chr20	51386956	51542719	NFATC2|NM_012340.4	-	51386956,51398642,51432066,51435187,51435705,51454547,51473979,51475457,51516783,51523080,51542369	51391451,51398730,51432756,51435314,51435761,51454688,51474152,51475660,51516955,51524110,51542719	0.933333
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	48868595	48868637	48868595	-	High_confidence	197	207	965	71.999800	7.463424	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.988601
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	48753676	48753677	48753676	-	High_confidence	8	8	10	0.746112	2.721928	chr19	48753519	48753902	LTR|ERVK|LTR13A	-	chr19	48748010	48753660	FUT1|ENST00000645652.1	-	48748010,48752489,48752891,48753324,48753647	48751283,48752725,48753122,48753563,48753660	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	46374832	46374833	46374832	-	RAMPAGE_only	24	24	25	1.865280	3.938722	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46371940	46378645	RUBCNL|ENST00000439642.1	-	46371940,46377889,46378446	46372597,46378005,46378645	0.600000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	42607590	42607607	42607606	-	RAMPAGE_only	17	21	26	1.939891	4.103910	chr21	42607449	42607803	LTR|ERVL|LTR47A	-	chr21	42599279	42615058	LINC01671|ENST00000419628.1	-	42599279,42614852	42600848,42615058	0.961538
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	150567260	150567288	150567269	+	High_confidence	2	2	9	0.671501	3.000000	chr7	150567129	150567290	DNA|hAT-Charlie|MER3	-	chr7	150567276	150573955	GIMAP4|ENST00000255945.3	+	150567276,150569887,150572128	150567437,150569959,150573955	0.888889
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	157274870	157274893	157274892	+	RAMPAGE_only	3	3	8	0.596890	3.000000	chr1	157274375	157275504	LTR|ERV1|HERVFH21-int	-	chr1	157280715	157283068	AL138900.3|ENST00000607010.1	+	157280715,157282577	157280853,157283068	0.500000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	68503585	68503703	68503585	-	RAMPAGE_only	12	13	91	6.789618	5.955579	chr4	68503340	68504936	LINE|L1|L1P2	+	chr4	68310386	68350106	YTHDC1|NM_133370.2	-	68310386,68316313,68318518,68318689,68318825,68320122,68322748,68324138,68330001,68330201,68332102,68333307,68337026,68337571,68338282,68349725	68314323,68316448,68318581,68318729,68318862,68320205,68322915,68324223,68330119,68330310,68332197,68333397,68337450,68337900,68338384,68350106	0.538462
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	35294421	35294473	35294442	+	RAMPAGE_only	5	5	17	1.268390	3.734522	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	0.823529
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	48683362	48683363	48683362	+	High_confidence	23	26	26	1.939891	3.844107	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.961538
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	31121337	31121338	31121337	-	RAMPAGE_only	13	16	17	1.268390	3.750000	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.941176
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	150575750	150575759	150575758	+	RAMPAGE_only	5	5	9	0.671501	2.725481	chr3	150575806	150576097	SINE|Alu|AluSz	+	chr3	150568031	150584234	EIF2A|ENST00000465535.1	+	150568031,150568175,150571957,150575648,150583199,150583845	150568046,150568292,150572529,150575762,150583265,150584234	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	153552107	153552143	153552107	-	RAMPAGE_only	164	172	356	26.561584	6.336201	chr1	153551862	153552168	SINE|Alu|AluSx	+	chr1	153547328	153549372	S100A3|ENST00000368713.7	-	153547328,153548344,153549180	153547846,153548490,153549372	0.831461
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	18706991	18707033	18707030	-	RAMPAGE_only	2	3	9	0.671501	2.947703	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18704304	18726180	IGSF22|ENST00000513874.5	-	18704304,18705816,18706913,18707803,18708206,18709386,18710326,18710654,18712081,18713851,18714276,18714499,18715431,18716727,18717930,18718614,18719715,18720063,18720185,18721534,18721909,18724127,18726073	18704538,18706146,18707213,18707996,18708295,18709683,18710455,18710828,18712384,18714148,18714418,18714624,18715716,18717000,18718093,18718728,18719893,18720103,18720285,18721671,18722041,18724269,18726180	0.888889
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	122064308	122064343	122064308	+	RAMPAGE_only	3	3	9	0.671501	2.500000	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.555556
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	69307113	69307131	69307113	-	High_confidence	6	6	11	0.820723	2.721928	chr9	69306938	69307567	LTR|ERV1|MER41B	-	chr9	69296684	69307135	BANCR|ENST00000624238.2	-	69296684,69304935,69306147,69306853	69296867,69305077,69306290,69307135	0.909091
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	19386333	19386335	19386333	-	High_confidence	18	26	37	2.760614	4.436007	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.945946
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	35432475	35432534	35432475	-	High_confidence	3	3	15	1.119168	3.235926	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.933333
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	37973919	37973940	37973939	+	High_confidence	3	3	6	0.447667	2.584963	chr2	37973395	37973996	LINE|L2|L2a	-	chr2	37974690	37989610	RMDN2|ENST00000496735.1	+	37974690,37981282,37989540	37975314,37981343,37989610	0.666667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	83179178	83179179	83179178	+	RAMPAGE_only	13	13	16	1.193779	3.577820	chr15	83178896	83179386	LTR|ERVL|LTR53	+	chr15	83180801	83184796	AC103876.1|ENST00000561498.1	+	83180801,83184647	83181021,83184796	0.687500
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	24137838	24137866	24137852	+	RAMPAGE_only	2	2	10	0.746112	2.947703	chr3	24137269	24137970	LINE|L2|L2a	-	chr3	24151323	24189956	LOC101927854|NR_121667.1	+	24151323,24173783,24177949,24189574	24151400,24173904,24178012,24189956	0.500000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	50267475	50267502	50267499	+	High_confidence	5	6	19	1.417613	3.536887	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267498	50278427	SMIM25|ENST00000445003.5	+	50267498,50277490,50278176	50267663,50277613,50278427	0.894737
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	50541367	50541389	50541367	+	RAMPAGE_only	9	9	23	1.716057	4.004886	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	0.782609
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	110179297	110179398	110179297	-	RAMPAGE_only	7	8	63	4.700505	4.532525	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	0.984127
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	72135708	72135743	72135708	+	High_confidence	6	7	28	2.089113	3.994680	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	0.964286
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	178323536	178323570	178323569	+	High_confidence	7	8	24	1.790669	3.732159	chr2	178323457	178323762	SINE|Alu|AluSq	-	chr2	178323569	178332701	OSBPL6|ENST00000477097.1	+	178323569,178324176,178328255,178331551,178332640	178323780,178324269,178328378,178331605,178332701	0.708333
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	37984611	37984626	37984625	+	RAMPAGE_only	12	12	23	1.716057	3.294664	chr15	37984547	37984681	LTR|ERVL-MaLR|MLT1A0	+	chr15	38004745	38025018	LINC02345|ENST00000557883.2	+	38004745,38020191,38024680	38004832,38020532,38025018	0.521739
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	135444253	135444260	135444253	-	High_confidence	27	27	43	3.208281	4.737323	chr9	135444140	135444321	LTR|ERV1|LTR2C	-	chr9	135433057	135444764	MSTRG.28855.1	-	135433057	135444764	0.860465
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	5726324	5726325	5726324	-	High_confidence	43	47	50	3.730560	4.279487	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.600000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	4610469	4610552	4610494	+	High_confidence	22	27	143	10.669400	6.129255	chr17	4610403	4610704	SINE|Alu|AluJb	+	chr17	4610448	4617650	LINC01996|ENST00000573270.1	+	4610448,4616762	4610833,4617650	0.965035
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	69563148	69563151	69563148	+	RAMPAGE_only	11	11	20	1.492224	4.021928	chr15	69563010	69563181	SINE|MIR|MIRb	+	chr15	69561956	69680396	DRAIC|ENST00000644274.1	+	69561956,69563115,69563589,69565193,69570739,69578325,69671725,69677545,69680210	69562017,69563302,69563804,69565527,69570904,69578461,69671907,69677640,69680396	0.900000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	67490662	67490663	67490662	-	High_confidence	112	112	152	11.340901	5.886346	chr5	67490503	67490858	LTR|ERVL-MaLR|THE1A	-	chr5	67455318	67490905	MSTRG.22588.1	-	67455318,67466872,67467905,67490579	67465327,67466938,67468053,67490905	0.868421
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	135965670	135965762	135965761	+	High_confidence	13	13	100	7.461119	5.503447	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.990000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	9140390	9140428	9140421	+	High_confidence	14	14	62	4.625894	4.780918	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.806452
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	11351636	11351676	11351675	-	RAMPAGE_only	27	28	42	3.133670	4.735362	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.595238
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	48492596	48492623	48492622	-	High_confidence	4	6	9	0.671501	3.000000	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.555556
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	113187330	113187344	113187343	-	High_confidence	3	4	10	0.746112	2.947703	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.900000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	18149863	18149885	18149884	+	High_confidence	5	5	20	1.492224	3.165957	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	74000284	74000299	74000284	+	RAMPAGE_only	6	6	13	0.969945	3.085055	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	27530781	27530809	27530795	-	RAMPAGE_only	7	7	19	1.417613	3.503258	chr17	27530659	27530810	LINE|L1|L1ME4a	-	chr17	27526385	27527223	AC069366.1|ENST00000583159.1	-	27526385	27527223	0.578947
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	107580245	107580267	107580264	+	High_confidence	716	717	3134	233.831475	7.138349	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.918634
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	244614685	244614689	244614685	+	RAMPAGE_only	5	5	11	0.820723	2.845351	chr1	244614281	244614799	LTR|ERVL|LTR101_Mam	-	chr1	244461410	244640360	CATSPERE|ENST00000428042.1	+	244461410,244477540,244477905,244479716,244552321,244560667,244572329,244581795,244583863,244588481,244591680,244593394,244593498,244605694,244610239,244617528,244635488,244639927	244461494,244477614,244477975,244479784,244552814,244561145,244572772,244581854,244583939,244588534,244591731,244593428,244593578,244605794,244610326,244617686,244635542,244640360	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	45441877	45441878	45441877	-	High_confidence	49	50	63	4.700505	4.773336	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45430651	45441808	AC025580.1|ENST00000559553.1	-	45430651,45433612,45441780	45430814,45434150,45441808	0.714286
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	68503767	68503800	68503777	-	RAMPAGE_only	16	17	48	3.581337	5.155549	chr4	68503340	68504936	LINE|L1|L1P2	+	chr4	68310386	68350106	YTHDC1|NM_133370.2	-	68310386,68316313,68318518,68318689,68318825,68320122,68322748,68324138,68330001,68330201,68332102,68333307,68337026,68337571,68338282,68349725	68314323,68316448,68318581,68318729,68318862,68320205,68322915,68324223,68330119,68330310,68332197,68333397,68337450,68337900,68338384,68350106	0.604167
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	4782342	4782359	4782358	+	High_confidence	12	12	23	1.716057	3.606937	chr3	4782402	4782508	DNA|hAT-Charlie|MER117	+	chr3	4782339	4788458	ITPR1|ENST00000481415.2	+	4782339,4783815,4787946	4782741,4783920,4788458	0.782609
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	111097310	111097352	111097319	-	High_confidence	9	9	52	3.879782	4.740861	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.980769
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	3477038	3477079	3477055	-	High_confidence	87	92	333	24.845527	5.760623	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3475797	3477333	MSTRG.4140.1	-	3475797,3476942	3476373,3477333	0.879880
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	159428326	159428357	159428356	-	RAMPAGE_only	14	18	38	2.835225	4.340083	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159386373	159453661	MSTRG.16658.10	-	159386373,159389344,159395768,159398828,159400598,159404848,159405021,159412334,159427940,159428310,159429199,159432756,159438302,159439008,159446781,159448241,159453612	159386607,159389485,159397389,159398894,159400664,159404910,159405114,159412545,159428042,159428419,159429260,159433363,159438695,159439212,159446975,159448403,159453661	0.894737
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	80301327	80301328	80301327	+	RAMPAGE_only	42	46	46	3.432115	4.544876	chr4	80301302	80301442	DNA|TcMar-Tigger|Tigger9b	+	chr4	80335719	80963756	C4orf22|NM_152770.2	+	80335719,80362753,80583092,80869992,80944809,80963516	80335879,80362884,80583183,80870135,80944939,80963756	0.695652
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	44126232	44126274	44126249	-	High_confidence	24	25	80	5.968895	4.369326	chr6	44126165	44126303	DNA|hAT-Charlie|MER112	-	chr6	44113453	44126267	MRPL14|NM_001318770.1	-	44113453,44116540,44125952	44114209,44116629,44126267	0.987500
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	102930112	102930163	102930112	+	High_confidence	2	4	13	0.969945	3.418296	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.615385
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	67886471	67886535	67886471	+	High_confidence	12	14	53	3.954393	4.323289	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.886792
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	132285531	132285557	132285556	-	High_confidence	3	6	11	0.820723	3.459432	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.909091
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	3536515	3536526	3536515	-	RAMPAGE_only	4	5	8	0.596890	2.750000	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531988	3534143	AC108488.1|ENST00000416463.1	-	3531988,3533107,3534112	3532310,3533190,3534143	0.625000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	138032236	138032261	138032237	+	RAMPAGE_only	12	18	38	2.835225	3.880771	chr3	138032139	138032441	SINE|Alu|AluJb	+	chr3	138010163	138033652	CLDN18|NM_016369.3	+	138010163,138023657,138024606,138029796,138030969	138010445,138023822,138024724,138029907,138033652	0.973684
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	123390743	123390744	123390743	+	High_confidence	6	6	8	0.596890	2.750000	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	43120116	43120151	43120134	+	RAMPAGE_only	4	4	15	1.119168	3.640224	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43145152	43156396	FAM183A|ENST00000410048.5	+	43145152,43150760,43152827,43156205	43145297,43150820,43152931,43156396	0.666667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	3536806	3536863	3536827	-	High_confidence	8	8	38	2.835225	4.701746	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.947368
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	101308299	101308325	101308300	+	High_confidence	4	7	20	1.492224	3.642150	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.900000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	58455289	58455313	58455289	-	RAMPAGE_only	5	7	12	0.895334	3.251629	chr5	58455099	58455251	DNA|hAT-Charlie|MER5A	-	chr5	58453986	58460086	MSTRG.22528.3	-	58453986,58454910,58455538,58456025,58456491,58456944,58457180,58457487,58458083,58458724,58458984,58459689	58454774,58455414,58455779,58456155,58456589,58457092,58457379,58457583,58458528,58458841,58459092,58460086	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	9965320	9965339	9965338	+	RAMPAGE_only	4	4	17	1.268390	3.454822	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.529412
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	216025838	216025839	216025838	-	RAMPAGE_only	5	5	7	0.522278	2.521641	chr2	216025408	216025796	LTR|ERVL|LTR16A	-	chr2	215945572	216032959	MREG|ENST00000420348.1	-	215945572,215947022,215996305,216032788	215945734,215947113,215996465,216032959	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	100355262	100355302	100355280	+	High_confidence	22	24	115	8.580287	5.493456	chr12	100355266	100355510	SINE|MIR|MIR	+	chr12	100355234	100422059	MSTRG.6823.1	+	100355234,100357263,100380700,100391000,100393368,100396329,100401776,100402339,100402595,100404037,100412769,100418028,100419814	100355355,100357492,100380953,100391119,100393483,100396417,100401863,100402479,100402745,100404170,100412880,100418156,100422059	0.913043
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	47004182	47004237	47004182	+	High_confidence	12	12	48	3.581337	4.605389	chr1	47003946	47004346	LTR|ERV1|MER51B	+	chr1	47004239	47050754	CYP4X1|NM_001320290.1	+	47004239,47029989,47031435,47033240,47035805,47036016,47038659,47039341,47046466,47048564,47049421,47049999	47004369,47030131,47031480,47033368,47035933,47036171,47038766,47039532,47046600,47048629,47049504,47050754	0.916667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	150308273	150308281	150308273	-	RAMPAGE_only	10	10	24	1.790669	3.855389	chr7	150307703	150312283	LTR|ERV1|HERVH-int	+	chr7	150247211	150302980	ACTR3C|NM_001164459.1	-	150247211,150248947,150284752,150286366,150289449,150293311,150295251,150302841	150247569,150249054,150284845,150286540,150289593,150293419,150295347,150302980	0.625000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	9102704	9102731	9102720	+	High_confidence	31	33	140	10.445567	5.544323	chr4	9097916	9105755	LTR|ERV1|HERVE-int	+	chr4	9102700	9131703	MSTRG.21029.2	+	9102700,9128269,9130250	9102838,9128490,9131703	0.750000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	101217578	101217599	101217598	-	High_confidence	5	5	18	1.343001	3.454822	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.944444
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	143070964	143071000	143070964	+	High_confidence	66	66	104	7.759564	5.372551	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143070957	143487479	MSTRG.16557.1	+	143070957,143071361,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372	143071108,143071394,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487479	0.769231
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	133370461	133370462	133370461	+	High_confidence	7	7	7	0.522278	2.521641	chr7	133370157	133370732	LTR|ERV1|MER4A1_	-	chr7	133370461	133822251	MSTRG.26484.9	+	133370461,133374827,133475327,133480049,133630044,133817324	133370590,133375002,133475473,133480138,133630141,133822251	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	49657348	49657371	49657348	-	High_confidence	5	5	14	1.044557	3.235926	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.928571
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	23838643	23838646	23838643	-	High_confidence	4	4	8	0.596890	2.521641	chr1	23837780	23838651	LTR|ERV1|LTR1A2	+	chr1	23801886	23838620	HMGCL|ENST00000374487.6	-	23801886,23804399,23808134,23810735,23814189,23816674,23817475,23820509,23826083,23838063	23802564,23804525,23808323,23810799,23814338,23816770,23817583,23820593,23826183,23838620	0.875000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	42271589	42271624	42271589	-	High_confidence	8	9	16	1.193779	3.640224	chr15	42271434	42271732	DNA|TcMar-Tigger|Tigger3a	+	chr15	42239667	42271601	TMEM87A|ENST00000561578.5	-	42239667,42244049,42260957,42261195,42264089,42267946,42271554	42239731,42244167,42261002,42261249,42264203,42268032,42271601	0.687500
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	53670406	53670431	53670406	-	RAMPAGE_only	4	4	20	1.492224	3.787144	chr12	53670294	53670608	DNA|TcMar-Tigger|MER47B	-	chr12	53665170	53674021	ATP5MC2|ENST00000495596.5	-	53665170,53669147,53669870,53672575	53665428,53669341,53669948,53674021	0.950000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	65382641	65382646	65382645	-	High_confidence	6	6	13	0.969945	3.392747	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.923077
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	65958630	65958631	65958630	+	RAMPAGE_only	12	12	17	1.268390	3.292770	chr11	65958625	65958770	SINE|MIR|MIRc	+	chr11	65945643	65959963	TSGA10IP|NM_152762.2	+	65945643,65946879,65947109,65948000,65953566,65958882,65959189,65959816	65945822,65947016,65947828,65948148,65953737,65958982,65959314,65959963	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	18063205	18063218	18063205	-	High_confidence	3	4	12	0.895334	2.913977	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.916667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	75347042	75347074	75347042	+	High_confidence	5	5	17	1.268390	3.057476	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.941176
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	7946878	7946879	7946878	+	High_confidence	11	11	16	1.193779	2.530639	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	47914248	47914261	47914248	+	High_confidence	2	4	10	0.746112	3.121928	chr10	47914060	47914541	LTR|ERVL|LTR33	+	chr10	47914114	47923524	MSTRG.3242.1	+	47914114,47918095,47918678,47921928	47917303,47918220,47920893,47923524	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	100192419	100192420	100192419	-	RAMPAGE_only	26	26	27	2.014502	4.056021	chr2	100192079	100192499	LTR|ERVL-MaLR|MLT1L	-	chr2	99996218	100142575	MSTRG.16254.7	-	99996218,100007147,100008811,100104401,100105503,100112385,100129223,100142483	100007017,100007460,100008932,100104518,100105583,100112524,100129306,100142575	0.666667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	131325163	131325195	131325163	-	RAMPAGE_only	3	3	10	0.746112	2.641604	chr6	131323748	131326796	LTR|ERV1|HERVH-int	+	chr6	131258710	131327040	MSTRG.24816.2	-	131258710,131263230,131314737	131261201,131314618,131327040	0.900000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	45620853	45620854	45620853	-	RAMPAGE_only	15	15	17	1.268390	3.616875	chr22	45620676	45621053	LTR|ERVL-MaLR|THE1D	-	chr22	45604431	45605647	LINC01589|NR_131244.1	-	45604431,45605400	45604758,45605647	0.529412
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73841808	73841836	73841835	-	High_confidence	5	8	14	1.044557	3.238901	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.857143
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	111841288	111841289	111841288	-	High_confidence	9	10	12	0.895334	3.022055	chr12	111841073	111841497	LINE|L2|L2b	+	chr12	111839766	111841902	MAPKAPK5-AS1|ENST00000443596.1	-	111839766,111841683	111840477,111841902	0.666667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	144533132	144533171	144533132	+	RAMPAGE_only	5	5	11	0.820723	2.913977	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	39026127	39026131	39026127	+	High_confidence	3	3	14	1.044557	3.392747	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.928571
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	217842167	217842185	217842173	-	High_confidence	14	19	48	3.581337	4.363039	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.833333
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	203533429	203533440	203533439	-	High_confidence	5	5	10	0.746112	2.503258	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.900000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	7906253	7906254	7906253	-	High_confidence	15	15	17	1.268390	3.734522	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.823529
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	67884842	67884887	67884866	+	RAMPAGE_only	4	4	14	1.044557	2.896292	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.642857
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	67387157	67387158	67387157	-	RAMPAGE_only	7	7	11	0.820723	2.646439	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.818182
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	8788252	8788253	8788252	+	High_confidence	14	14	14	1.044557	3.324863	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	219730121	219730129	219730128	+	RAMPAGE_only	9	9	18	1.343001	3.614369	chr2	219729861	219730382	LINE|L1|L1ME1	-	chr2	219685491	219737937	AC009502.1|ENST00000606673.1	+	219685491,219737453	219685609,219737937	0.722222
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	80147920	80147932	80147931	+	High_confidence	4	6	14	1.044557	2.931209	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.642857
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	141738022	141738072	141738022	-	High_confidence	9	9	42	3.133670	4.454636	chr7	141737808	141738038	SINE|Alu|AluJb	-	chr7	141723901	141737775	WEE2-AS1|ENST00000486906.1	-	141723901,141727991,141737382	141724024,141728145,141737775	0.690476
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	41940217	41940222	41940221	-	High_confidence	17	17	28	2.089113	3.912114	chr22	41939903	41940386	LINE|L2|L2a	+	chr22	41938720	41940219	CENPM|NM_001110215.2	-	41938720,41940138	41939196,41940219	0.964286
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	2971883	2971915	2971892	-	RAMPAGE_only	2	2	9	0.671501	2.750000	chr11	2971741	2972075	DNA|TcMar-Tigger|MER47A	+	chr11	2971449	2989268	NAP1L4|ENST00000530064.5	-	2971449,2972101,2976023,2978283,2979206,2983745,2989128	2971534,2972243,2976123,2978342,2979237,2983813,2989268	0.777778
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	43553158	43553204	43553158	+	RAMPAGE_only	6	10	24	1.790669	3.855389	chr1	43553152	43553374	SINE|MIR|MIR	+	chr1	43545075	43579284	PTPRF|ENST00000437607.1	+	43545075,43553491,43553799,43569589,43578809,43579175	43545166,43553637,43553941,43569778,43578920,43579284	0.916667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	145691740	145691741	145691740	-	High_confidence	6	6	6	0.447667	2.584963	chr1	145691668	145691826	SINE|Alu|AluSc8	+	chr1	145670984	145691802	PDZK1|ENST00000344770.6	-	145670984,145672729,145673656,145678448,145680911,145682499,145686476,145687811,145691731	145671489,145673020,145673881,145678645,145681107,145682636,145686726,145688023,145691802	0.833333
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	30876016	30876017	30876016	+	High_confidence	6	6	9	0.671501	3.000000	chr16	30875869	30876035	SINE|MIR|MIRc	-	chr16	30875911	30895220	MIR762HG|ENST00000565573.1	+	30875911,30888713,30894547	30876118,30888958,30895220	0.888889
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	2838248	2838265	2838248	+	RAMPAGE_only	2	2	8	0.596890	2.500000	chr4	2838108	2838543	LINE|L1|L1ME3B	-	chr4	2843856	2930076	ADD1|NM_176801.2	+	2843856,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763,2907742,2908514,2914883,2926013,2926641,2928170	2844024,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905108,2907844,2908604,2915040,2926112,2926675,2930076	0.875000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	157273868	157273901	157273896	+	RAMPAGE_only	4	4	13	0.969945	2.873141	chr1	157273792	157274117	LTR|ERV1|HERVFH21-int	-	chr1	157280715	157283068	AL138900.3|ENST00000607010.1	+	157280715,157282577	157280853,157283068	0.769231
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	78081872	78081884	78081872	-	RAMPAGE_only	41	64	132	9.848677	4.574708	chr11	78081299	78085065	LTR|ERV1|HERVH-int	+	chr11	78068303	78080219	NDUFC2|ENST00000281031.4	-	78068303,78072997,78079578	78070036,78073141,78080219	0.931818
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	166850123	166850125	166850124	+	RAMPAGE_only	16	21	25	1.865280	3.772055	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.960000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	31542028	31542066	31542032	-	RAMPAGE_only	11	11	38	2.835225	3.773214	chr2	31541502	31542215	LINE|L1|L1M1	+	chr2	31524585	31580971	SRD5A2|NM_000348.3	-	31524585,31529306,31531370,31533602,31580619	31526262,31529457,31531472,31533766,31580971	0.842105
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	35732358	35732440	35732358	-	High_confidence	9	9	42	3.133670	4.006721	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.976190
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	131326884	131326941	131326897	-	High_confidence	20	20	65	4.849727	5.263759	chr6	131326790	131326938	LTR|ERV1|HERVH-int	+	chr6	131235095	131327040	MSTRG.24816.1	-	131235095,131325785	131241111,131327040	0.984615
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	81154211	81154214	81154211	-	High_confidence	4	5	10	0.746112	3.321928	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	24580610	24580623	24580622	+	High_confidence	8	8	13	0.969945	3.334679	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	174409993	174410020	174409993	+	High_confidence	3	3	12	0.895334	3.095795	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410036	174428859	SCRN3|ENST00000548921.5	+	174410036,174422884,174424474,174427712	174410225,174423047,174424649,174428859	0.500000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	129488911	129488928	129488911	+	High_confidence	3	3	11	0.820723	2.521928	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.909091
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	28234030	28234054	28234030	-	RAMPAGE_only	5	5	15	1.119168	3.640224	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	79698544	79698588	79698587	+	High_confidence	22	22	71	5.297395	4.533619	chr1	79698547	79698695	LTR|ERV1|HERVH-int	-	chr1	79698607	79715572	MSTRG.1184.1	+	79698607,79703826	79699691,79715572	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	12522799	12522821	12522810	+	RAMPAGE_only	32	32	115	8.580287	5.229380	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.608696
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	227142956	227142967	227142956	-	RAMPAGE_only	5	6	11	0.820723	3.121928	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317714	CDC42BPA|ENST00000334218.9	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227059372,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227112670,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227059411,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227112913,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317714	0.909091
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	117454949	117454966	117454949	+	High_confidence	7	9	22	1.641446	4.095795	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.772727
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	20423697	20423704	20423703	-	RAMPAGE_only	13	16	34	2.536781	3.936892	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.764706
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	23536877	23536878	23536877	+	High_confidence	74	74	78	5.819673	4.940882	chr22	23536061	23537026	LTR|ERVK|LTR5_Hs	+	chr22	23536880	23539480	PCAT14|ENST00000629869.1	+	23536880,23538760	23537136,23539480	0.807692
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	238486008	238486043	238486008	-	High_confidence	2	2	9	0.671501	3.169925	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480383	238486017	LINC01139|NR_015407.1	-	238480383,238485784	238481681,238486017	0.777778
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	179519037	179519079	179519078	-	RAMPAGE_only	3	3	7	0.522278	2.521641	chr2	179518985	179519149	SINE|Alu|AluJo	-	chr2	179480893	179536503	ZNF385B|ENST00000495289.1	-	179480893,179483271,179518527,179536335	179481156,179483434,179518638,179536503	0.714286
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	65642904	65642951	65642906	+	High_confidence	8	15	52	3.879782	5.162621	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	0.980769
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	20595817	20595833	20595817	+	RAMPAGE_only	3	5	8	0.596890	2.500000	chr4	20595845	20596093	LINE|L1|L1MA2	+	chr4	20253815	20619183	SLIT2|ENST00000503837.5	+	20253815,20256671,20257867,20268809,20467751,20480715,20486199,20488818,20490802,20491760,20510494,20511065,20519381,20523759,20524013,20528948,20531983,20533571,20539440,20541452,20542493,20546030,20548487,20549056,20550826,20553804,20567261,20567517,20568864,20589643,20595696,20596414,20598264,20610012,20616909,20617438,20618767	20253994,20256743,20257939,20268881,20467823,20480787,20486271,20488982,20490814,20491899,20510566,20511137,20519453,20523903,20524177,20529099,20532058,20533715,20539584,20541619,20542626,20546099,20548559,20549128,20550898,20553968,20567386,20567615,20569004,20589737,20595834,20596655,20598395,20610167,20617198,20617650,20619183	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	141332616	141332617	141332616	-	High_confidence	16	16	16	1.193779	2.852217	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	75376739	75376746	75376745	-	RAMPAGE_only	6	6	12	0.895334	3.251629	chr16	75376668	75377149	LTR|ERV1|MER66B	+	chr16	75293905	75363035	CFDP1|ENST00000564793.1	-	75293905,75305023,75362874	75294042,75305182,75363035	0.666667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	50362805	50362849	50362848	-	High_confidence	5	5	22	1.641446	3.879664	chr19	50362729	50362815	SINE|Alu|AluJr	-	chr19	50358477	50362843	NAPSA|ENST00000599181.1	-	50358477,50360940	50359862,50362843	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	29735252	29735258	29735252	-	High_confidence	5	5	14	1.044557	2.719295	chr8	29735013	29735262	SINE|MIR|MIR	-	chr8	29673921	29735223	LINC00589|ENST00000518623.5	-	29673921,29677909,29726155,29735170	29674443,29678004,29726423,29735223	0.571429
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	138593997	138594035	138594034	-	High_confidence	8	8	19	1.417613	3.461320	chr3	138593850	138594045	SINE|MIR|MIRb	-	chr3	138572858	138594129	CEP70|ENST00000485115.1	-	138572858,138591853,138593708	138572932,138591956,138594129	0.684211
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	74199383	74199405	74199404	+	High_confidence	19	19	36	2.686003	4.392147	chr8	74199086	74199513	LINE|L2|L2a	+	chr8	74199395	74208441	AC087627.1|ENST00000522339.2	+	74199395,74207358,74207720	74199532,74207493,74208441	0.916667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	2205781	2205824	2205823	+	High_confidence	9	9	28	2.089113	3.507380	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.928571
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	17282800	17282831	17282830	+	RAMPAGE_only	4	4	13	0.969945	3.584963	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.692308
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	154287456	154287470	154287469	+	High_confidence	14	14	29	2.163725	4.164498	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	0.827586
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	33021454	33021456	33021454	-	RAMPAGE_only	14	20	23	1.716057	3.295357	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.956522
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	17792747	17792756	17792747	-	RAMPAGE_only	6	6	17	1.268390	3.499228	chr8	17792581	17792869	SINE|Alu|AluSz6	+	chr8	17643803	17800668	MTUS1|ENST00000262102.10	-	17643803,17646981,17649845,17653185,17653424,17654560,17655862,17675185,17684327,17713213,17715766,17723671,17743603,17753716,17800597	17646139,17647079,17649962,17653281,17653498,17654666,17656065,17675252,17684542,17713252,17715901,17723833,17743799,17755961,17800668	0.764706
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	45292670	45292728	45292685	+	High_confidence	3	5	19	1.417613	3.503258	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.789474
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	36316329	36316330	36316329	-	RAMPAGE_only	14	14	19	1.417613	3.681881	chr14	36316259	36316409	DNA?|DNA?|Eulor6E	-	chr14	36314700	36320577	MSTRG.8086.14	-	36314700,36317899	36316960,36320577	0.789474
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	17282914	17282940	17282914	+	RAMPAGE_only	3	3	11	0.820723	2.663533	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.727273
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73841973	73841979	73841973	-	High_confidence	8	8	15	1.119168	3.182006	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73820716	73842684	XIST|ENST00000650548.1	-	73820716,73822066,73826114,73829067,73831065,73837439,73841381	73821029,73822216,73827984,73829231,73831274,73837503,73842684	0.866667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	185951811	185951830	185951811	+	RAMPAGE_only	11	14	25	1.865280	3.403107	chr1	185950610	185953761	LTR|ERV1|HERVH-int	-	chr1	185957068	185993437	HMCN1|ENST00000485744.5	+	185957068,185962517,185963767,185965801,185970334,185977786,185980977,185982261,185984168,185987431,185989487,185990274,185993181	185957140,185962666,185963895,185965915,185970493,185977981,185981073,185982389,185984313,185987544,185989647,185990443,185993437	0.920000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	9775645	9775676	9775675	+	High_confidence	11	11	24	1.790669	3.914866	chr11	9775466	9776058	LTR|ERVL|MER21C	+	chr11	9775730	9808379	SBF2-AS1|ENST00000534671.1	+	9775730,9780375,9807847	9775765,9780575,9808379	0.500000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	66408513	66408542	66408538	+	High_confidence	11	13	46	3.432115	4.879526	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66412135	LINC00920|ENST00000499966.1	+	66408523,66410279	66408814,66412135	0.869565
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	8842153	8842215	8842214	+	High_confidence	4	5	14	1.044557	3.182006	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.714286
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	13277057	13277086	13277085	-	High_confidence	18	18	42	3.133670	4.141619	chr8	13277041	13277334	SINE|Alu|AluJr	+	chr8	13100605	13276873	DLC1|ENST00000503161.6	-	13100605,13102789,13110741,13115585,13276694	13100770,13102853,13110823,13115657,13276873	0.976190
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	153967486	153967504	153967486	+	High_confidence	7	9	22	1.641446	3.046381	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.636364
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	92914959	92914974	92914973	+	RAMPAGE_only	3	4	9	0.671501	2.503258	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92924277	92997069	CHD2|ENST00000637572.1	+	92924277,92927243,92929029,92937517,92939577,92941821,92942842,92944414,92945820,92946037,92948951,92953356,92955422,92956458,92967324,92971764,92972264,92974878,92978233,92979134,92980814,92981364,92984329,92985497,92991475,92992858,92996956	92924552,92927330,92929091,92937625,92939718,92941955,92943068,92944515,92945865,92946216,92949076,92954336,92955512,92956649,92967513,92971927,92972417,92974950,92978383,92979283,92980911,92981457,92984500,92985673,92991517,92992998,92997069	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	72355126	72355169	72355168	-	High_confidence	6	6	24	1.790669	3.381620	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.958333
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	2242922	2242923	2242922	+	High_confidence	8	8	8	0.596890	3.000000	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	183123434	183123455	183123448	-	RAMPAGE_only	11	11	28	2.089113	3.767376	chr3	183123276	183123575	SINE|Alu|AluSq2	+	chr3	183122214	183162879	LAMP3|NM_014398.3	-	183122214,183135716,183140537,183152374,183153681,183162606	183124214,183135887,183140595,183152503,183154391,183162879	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	166185025	166185032	166185025	+	RAMPAGE_only	5	5	10	0.746112	2.947703	chr2	166184665	166185205	LINE|L2|L2a	-	chr2	166149180	166294588	AC010127.1|ENST00000630020.2	+	166149180,166171386,166199638,166248194,166249342,166251833,166277087,166294564	166149572,166171558,166199818,166248276,166249384,166251912,166277247,166294588	0.600000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	187513638	187513653	187513652	-	High_confidence	8	10	27	2.014502	4.161978	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	0.851852
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	122478867	122478881	122478867	-	High_confidence	4	4	9	0.671501	2.725481	chr5	122478731	122478846	LTR|ERV1|LTR7	-	chr5	122436496	122479087	MGC32805|NR_051996.1	-	122436496,122450546,122451780,122454375,122478585,122479014	122437337,122450666,122451806,122454509,122478815,122479087	0.666667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	53811930	53811942	53811930	-	High_confidence	2	2	8	0.596890	2.500000	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	47997429	47997454	47997453	+	RAMPAGE_only	2	2	11	0.820723	2.921928	chr8	47995253	47998768	LTR|ERV1|HERVFH21-int	-	chr8	48008399	48064708	UBE2V2|ENST00000523111.6	+	48008399,48043032,48049852,48060681	48008470,48043181,48049978,48064708	0.909091
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	10941135	10941164	10941163	+	RAMPAGE_only	2	2	6	0.447667	2.584963	chr7	10941109	10941301	LINE|L2|L2b	-	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	28985642	28985710	28985709	+	High_confidence	6	7	22	1.641446	3.572624	chr6	28985713	28985796	SINE|Alu|AluJo	+	chr6	28986202	28987484	HCG15|ENST00000438190.1	+	28986202,28986312,28986676	28986232,28986506,28987484	0.636364
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	181954512	181954519	181954512	+	High_confidence	2	2	7	0.522278	2.584963	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954530	182117685	PPP1R1C|ENST00000490645.5	+	181954530,181962133,181975218,182061441,182063730,182117206	181954634,181962196,181975264,182061479,182063791,182117685	0.857143
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	64226142	64226180	64226158	-	High_confidence	40	41	236	17.608241	6.355087	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.974576
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	65053813	65053823	65053822	-	RAMPAGE_only	6	9	15	1.119168	3.056565	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.866667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	45450734	45450758	45450734	-	High_confidence	6	6	29	2.163725	4.487123	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.655172
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	203015483	203015519	203015518	+	High_confidence	26	28	107	7.983398	5.304753	chr2	203015479	203015763	SINE|Alu|AluSx1	-	chr2	203015790	203041857	NBEAL1|ENST00000492870.1	+	203015790,203016155,203041764	203015864,203016427,203041857	0.785047
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	97310606	97310613	97310611	+	RAMPAGE_only	10	17	26	1.939891	4.132944	chrX	97310220	97310731	LINE|L2|L2a	-	chrX	96685016	97604961	MSTRG.29518.6	+	96685016,96735757,96738585,96758153,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348115,97383908,97429649,97599252	96685190,96735790,96738762,96758258,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247839,97348280,97384044,97429745,97604961	0.961538
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	39021125	39021156	39021155	+	High_confidence	6	7	31	2.312947	4.018082	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	7566512	7566538	7566514	-	High_confidence	84	123	247	18.428964	5.658053	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.947368
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	74046709	74046758	74046757	+	High_confidence	5	5	14	1.044557	3.235926	chr7	74046801	74047110	SINE|Alu|AluSz6	+	chr7	74046658	74052236	ELN|ENST00000493839.1	+	74046658,74047674,74048141,74048502,74051749	74046767,74047716,74048201,74048556,74052236	0.571429
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	75127206	75127207	75127206	-	RAMPAGE_only	4	4	7	0.522278	2.521641	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.857143
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	158173024	158173025	158173024	-	High_confidence	33	34	39	2.909836	4.879506	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.897436
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	183163620	183163621	183163620	-	High_confidence	190	199	242	18.055908	6.004780	chr3	183163266	183163587	SINE|Alu|AluSc5	-	chr3	183122212	183163839	MSTRG.20692.1	-	183122212,183135716,183140537,183152374,183153681,183162606,183163619	183132956,183135887,183140595,183152503,183154391,183162730,183163839	0.958678
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	3482734	3482758	3482734	+	RAMPAGE_only	4	4	19	1.417613	3.892407	chr7	3482574	3482762	LINE|L1|L1MEd	+	chr7	3605945	4269000	MSTRG.25254.4	+	3605945,3619079,3639003,3641957,3821449,3950922,3951729,3958930,3962656,3967317,3969256,3971465,3974368,3987185,4010965,4012094,4017170,4049347,4051637,4067837,4076997,4079462,4110662,4113288,4114036,4127380,4129907,4132324,4145721,4149261,4158447,4161785,4174221,4175774,4178484,4205878,4208098,4210024,4220108,4221238,4233254,4237646,4241792,4245675,4265123,4268677	3606403,3619239,3639110,3642105,3821583,3951034,3951920,3959014,3962851,3967434,3969424,3971568,3974545,3987322,4011113,4012235,4017352,4049463,4051830,4067936,4077189,4079584,4110772,4113439,4114274,4127496,4130097,4132423,4145916,4149463,4158551,4161856,4174357,4175834,4178586,4205994,4208285,4210162,4220270,4221364,4233419,4237784,4241913,4245805,4265248,4269000	0.842105
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	73463610	73463625	73463624	-	RAMPAGE_only	10	10	18	1.343001	3.616875	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73275106	73458617	NUMB|ENST00000554546.5	-	73275106,73282358,73284080,73287109,73292733,73297210,73323129,73355625,73366896,73409936,73458492	73277293,73282505,73284374,73287314,73292874,73297285,73323204,73355766,73366981,73410068,73458617	0.555556
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	36122233	36122249	36122248	-	High_confidence	2	2	6	0.447667	2.584963	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.833333
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	50757115	50757130	50757115	+	High_confidence	3	3	9	0.671501	2.725481	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.555556
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	35899347	35899371	35899347	+	RAMPAGE_only	6	8	11	0.820723	3.095795	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35902479	35904271	HCST|NM_014266.3	+	35902479,35903350,35903771,35904119	35902636,35903416,35903903,35904271	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	33838228	33838240	33838228	+	RAMPAGE_only	3	3	7	0.522278	2.521641	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	6208681	6208682	6208681	-	High_confidence	68	68	68	5.073561	3.371712	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.970588
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	48662919	48662935	48662934	+	RAMPAGE_only	9	9	20	1.492224	3.103702	chr18	48662701	48663071	LINE|L1|L1ME3A	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	95436480	95436497	95436492	-	RAMPAGE_only	4	4	13	0.969945	3.180833	chr7	95436474	95436866	LTR|ERV1|LTR23	+	chr7	95411681	95435126	PON2|ENST00000490778.5	-	95411681,95412311,95416171,95424514,95434877	95411779,95412461,95416297,95424585,95435126	0.538462
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	78620056	78620057	78620056	+	High_confidence	13	16	16	1.193779	3.625000	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.937500
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	6853905	6853950	6853905	+	High_confidence	3	3	14	1.044557	3.324863	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853940	6895482	ALOX12P2|ENST00000574271.5	+	6853940,6854213,6892002,6894317,6894883,6895095,6895342	6854060,6854435,6892075,6894519,6895006,6895199,6895482	0.500000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	140700445	140700452	140700445	+	High_confidence	1009	1118	1884	140.567485	4.792137	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.988854
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	91462148	91462211	91462210	-	High_confidence	10	11	30	2.238336	3.758867	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.966667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	68906939	68906986	68906942	-	High_confidence	28	29	76	5.670451	4.938074	chr4	68905745	68907106	LTR|ERV1|HERV3-int	-	chr4	68901007	68906983	AC021146.12|ENST00000608365.1	-	68901007,68906874	68901375,68906983	0.618421
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	122487692	122487715	122487692	+	RAMPAGE_only	6	6	13	0.969945	2.777363	chr10	122487600	122487906	DNA|TcMar-Tigger|Tigger3a	-	chr10	122506690	122514907	HTRA1|ENST00000420892.1	+	122506690,122507369,122508655,122510095,122511969,122514190	122506885,122507402,122508770,122510153,122512065,122514907	0.846154
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	15602157	15602158	15602157	-	High_confidence	19	19	27	2.014502	3.426210	chrX	15602053	15602111	LINE|CR1|L3	-	chrX	15594886	15602148	ACE2|ENST00000484756.1	-	15594886,15600725,15601955	15595003,15601014,15602148	0.703704
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	60949435	60949444	60949443	-	RAMPAGE_only	15	23	36	2.686003	3.835506	chr1	60949259	60949438	SINE|MIR|MIRb	-	chr1	60940238	60970776	NFIA-AS2|ENST00000438559.5	-	60940238,60941179,60952510,60954321,60954484,60963565,60970547	60940631,60941252,60952684,60954370,60954602,60963804,60970776	0.805556
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	47289948	47289982	47289948	+	High_confidence	2	2	13	0.969945	2.623517	chr19	47289949	47290265	LINE|L1|L1M1	+	chr19	47290022	47307754	C5AR1|ENST00000595501.5	+	47290022,47291977,47307368,47307724	47290061,47292173,47307510,47307754	0.538462
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	174410318	174410351	174410329	+	High_confidence	4	4	18	1.343001	3.461320	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.888889
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	133654843	133654848	133654847	+	RAMPAGE_only	5	5	9	0.671501	3.000000	chr7	133654693	133655206	DNA|TcMar-Tigger|Tigger3b	-	chr7	133930440	133997634	EXOC4|ENST00000478265.1	+	133930440,133937890,133997491	133930713,133938069,133997634	0.666667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	5775174	5775216	5775174	+	RAMPAGE_only	3	3	17	1.268390	3.500000	chr19	5775110	5775356	LTR|ERVK|LTR3B_	-	chr19	5753510	5778734	CATSPERD|ENST00000309164.11	+	5753510,5754131,5757842,5759085,5763214,5766102,5768167,5770943,5772787,5776160,5778375	5753687,5754245,5757932,5759144,5763293,5766155,5768242,5771072,5772965,5776315,5778734	0.941176
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	29280832	29280866	29280853	-	High_confidence	4	4	19	1.417613	4.037401	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.631579
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	19487898	19487911	19487898	-	High_confidence	9	9	25	1.865280	3.683856	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.560000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	134467244	134467274	134467264	+	RAMPAGE_only	4	4	13	0.969945	2.623517	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134466184	134487915	AP004608.1|ENST00000528482.6	+	134466184,134467864,134480844,134482626,134485961	134467615,134467987,134480911,134482730,134487915	0.846154
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	37973790	37973871	37973870	+	RAMPAGE_only	3	4	13	0.969945	3.392747	chr2	37973395	37973996	LINE|L2|L2a	-	chr2	37950463	38004187	RMDN2|ENST00000442857.5	+	37950463,37974039,37975211,37981282,37989540,37991219,37997415,38003990,38004135	37950595,37974214,37975314,37981343,37989616,37991297,37997514,38004044,38004187	0.923077
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	42816443	42816461	42816460	-	RAMPAGE_only	3	3	7	0.522278	2.807355	chr22	42816198	42816422	SINE|MIR|MIR	-	chr22	42807073	42831652	ARFGAP3|ENST00000453516.5	-	42807073,42808766,42817141,42817728,42822269,42823655,42826939,42831548	42807163,42808890,42817264,42817857,42822409,42823702,42826999,42831652	0.571429
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	28613643	28613657	28613643	-	High_confidence	13	14	50	3.730560	5.110902	chr14	28613407	28613767	LTR|ERVL-MaLR|MLT1I	-	chr14	28592222	28613623	LINC02300|ENST00000549742.1	-	28592222,28612321,28613458	28592565,28612478,28613623	0.560000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	27983009	27983078	27983077	-	High_confidence	47	49	161	12.012402	5.992448	chr10	27982876	27983540	LTR|ERVL|LTR50	+	chr10	27812163	27983106	ARMC4|NM_001312689.1	-	27812163,27860624,27862433,27907662,27935009,27936725,27939896,27940562,27944221,27944815,27961567,27968922,27971107,27981465,27982928	27812625,27860846,27862622,27907777,27935252,27936880,27940007,27940805,27944431,27944962,27961715,27969018,27971313,27981582,27983106	0.956522
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	20658312	20658349	20658338	+	High_confidence	13	16	83	6.192729	5.022453	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658334	20995955	MSTRG.28031.3	+	20658334,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.795181
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	64318707	64318734	64318733	+	High_confidence	6	6	14	1.044557	2.931209	chr11	64318595	64318908	SINE|Alu|AluSx	-	chr11	64318181	64321740	PRDX5|ENST00000352435.8	+	64318181,64319733,64320864,64321006,64321585	64318386,64319868,64320903,64321068,64321740	0.928571
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	35432451	35432452	35432451	-	High_confidence	5	7	7	0.522278	2.807355	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	49687844	49687893	49687881	+	High_confidence	8	8	36	2.686003	4.062305	chr19	49687767	49688014	LINE|L2|L2	-	chr19	49687852	49689029	PRMT1|ENST00000527866.1	+	49687852,49688161	49687952,49689029	0.972222
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	22162165	22162236	22162182	+	High_confidence	8	8	28	2.089113	4.035582	chr8	22162061	22162331	LINE|L2|L2c	-	chr8	22161807	22164476	MSTRG.26947.10	+	22161807,22163079,22163435,22163900,22164265	22161870,22163202,22163546,22164059,22164476	0.892857
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	45645874	45645898	45645883	+	High_confidence	3	4	19	1.417613	3.576618	chr15	45645871	45646155	DNA|hAT-Tip100|Arthur1C	+	chr15	45645880	45669946	SQOR|ENST00000561493.5	+	45645880,45658906,45661954,45669927	45646008,45659157,45662125,45669946	0.842105
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	196404228	196404273	196404228	-	RAMPAGE_only	14	14	49	3.655948	4.734722	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225782	196465387	KCNT2|ENST00000498426.5	-	196225782,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196317173,196331155,196333846,196340340,196342078,196373139,196398562,196423049,196425851,196428104,196429576,196465292	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196317269,196331261,196334060,196340570,196342228,196373248,196398671,196423113,196425988,196428269,196429757,196465387	0.653061
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	118651563	118651602	118651601	-	High_confidence	9	9	34	2.536781	4.513795	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.970588
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	39800293	39800316	39800293	-	High_confidence	8	8	44	3.282892	4.918528	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.522727
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	26122997	26122998	26122997	-	High_confidence	12	12	12	0.895334	3.251629	chr6	26122928	26123343	LTR|ERV1|MER101	-	chr6	26117957	26123926	MSTRG.23858.2	-	26117957,26118192	26118032,26123926	0.916667
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	122209270	122209315	122209314	+	High_confidence	2	2	6	0.447667	2.584963	chr4	122209362	122209650	SINE|Alu|AluSx	+	chr4	122209173	122227747	KIAA1109|ENST00000482114.1	+	122209173,122209817,122210886,122219339,122220332,122224497	122209337,122209924,122211095,122219567,122220470,122227747	1.000000
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	20685269	20685286	20685285	-	High_confidence	8	8	22	1.641446	3.508695	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.818182
lung_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	35834099	35834107	35834106	+	RAMPAGE_only	8	8	14	1.044557	2.807355	chr9	35834126	35834304	SINE|MIR|MIR3	+	chr9	35829497	35854847	TMEM8B|NM_001042590.2	+	35829497,35834460,35835010,35841133,35841525,35842391,35845974,35846257,35846468,35846816,35852826,35853140,35853504	35829955,35834650,35835218,35841267,35841794,35842717,35846068,35846381,35846611,35846995,35852973,35853257,35854847	0.642857
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	65499795	65500004	65499795	+	High_confidence	13	14	134	4.262435	6.241243	chr11	65499661	65499925	LINE|L1|L1M4c	+	chr11	65499041	65503760	MSTRG.5152.3	+	65499041,65503116,65503728	65502393,65503120,65503760	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	92830059	92830087	92830059	+	RAMPAGE_only	2	3	7	0.222665	2.521641	chr10	92829619	92830222	LTR|ERV1|MER41B	+	chr10	92831113	93059493	MSTRG.3931.1	+	92831113,92834712,92893348,92894793,92894929,92899598,92909426,92915757,92919981,92928338,92934143,92934309,92935813,92940726,92948273,92952272,92954629,92955579,92974052,92997473,93014193,93056923,93058222	92831357,92834824,92893520,92894841,92895020,92899644,92909631,92915913,92920050,92928422,92934190,92934430,92935885,92940824,92948379,92952382,92954741,92955714,92974232,92997615,93014267,93057036,93059493	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	30999418	30999520	30999446	-	High_confidence	152	153	1002	31.872835	8.320632	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.547904
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	39021125	39021156	39021155	+	High_confidence	30	30	97	3.085494	5.407493	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.979381
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	77822992	77822998	77822994	-	RAMPAGE_only	3	5	9	0.286283	2.947703	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77716273	78031449	GNAQ|NM_002072.4	-	77716273,77728513,77794462,77797519,77815615,77922160,78031099	77721513,77728667,77794592,77797648,77815770,77922345,78031449	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	50766308	50766309	50766308	-	High_confidence	7	8	8	0.254474	2.807355	chr14	50766057	50766321	SINE|MIR|MIR	-	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	85494495	85494531	85494527	+	RAMPAGE_only	3	3	14	0.445329	3.546594	chr6	85494327	85494553	SINE|MIR|MIRc	-	chr6	85450090	85495778	NT5E|ENST00000257770.7	+	85450090,85467059,85471236,85485234,85487334,85489493,85490507,85491976,85493840	85450478,85467282,85471425,85485432,85487489,85489599,85490657,85492177,85495778	0.928571
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	50756844	50756897	50756853	-	RAMPAGE_only	3	4	30	0.954277	3.939572	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	6123692	6123744	6123692	-	High_confidence	3	3	21	0.667994	4.221928	chr12	6123646	6123784	LINE|L2|L2b	+	chr12	6095282	6124670	VWF|ENST00000321023.5	-	6095282,6110373,6110865,6121173,6122724,6123141,6124420	6095584,6110582,6110968,6121338,6122966,6123196,6124670	0.952381
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	50756736	50756771	50756741	-	RAMPAGE_only	2	2	15	0.477138	3.521641	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.933333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	48111154	48111194	48111177	-	High_confidence	102	103	575	18.290300	7.053420	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47899608	48111189	MSTRG.25703.2	-	47899608,48008633,48068229,48068952,48111048	47901935,48009114,48068641,48069926,48111189	0.770435
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	12927684	12927741	12927733	+	High_confidence	28	28	78	2.481119	6.003351	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927725	12980307	GPRC5D-AS1|ENST00000545914.5	+	12927725,12978940,12979523,12979999	12927803,12979021,12979622,12980307	0.525641
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	1378181	1378216	1378190	-	High_confidence	12	13	37	1.176941	4.777021	chr20	1378076	1378229	LTR|ERVL-MaLR|MLT1L	+	chr20	1369986	1378174	FKBP1A|ENST00000474726.5	-	1369986,1372075,1375490,1377429,1378069	1370072,1372240,1375603,1377511,1378174	0.621622
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	55947926	55948022	55948010	-	High_confidence	408	646	1107	35.212803	6.554580	chr4	55947862	55947994	LTR|ERV1|MER51D	-	chr4	55938072	55948007	MSTRG.22591.2	-	55938072,55940516,55947640	55938955,55940632,55948007	0.869919
mammary_microvascular_endothelial_cell_female_adult_26_years	chr18	36807856	36807870	36807869	-	High_confidence	7	8	17	0.540757	3.750000	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.588235
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	6493735	6493748	6493747	-	High_confidence	6	6	15	0.477138	3.664498	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6492151	6493718	MRPL51|ENST00000543959.5	-	6492151,6492861,6493673	6492467,6492972,6493718	0.866667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	12249214	12249234	12249214	+	RAMPAGE_only	3	3	14	0.445329	2.815072	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.928571
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	116648847	116648917	116648847	-	RAMPAGE_only	6	6	43	1.367796	4.414410	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chrUn_GL000195v1	66618	66619	66618	-	RAMPAGE_only	12	12	14	0.445329	3.664498	chrUn_GL000195v1	66503	66723	SINE|Alu|AluJo	-	chrUn_GL000195v1	42937	86719	LOC389831|NM_001242480.1	-	42937,48954,74120,86517	44923,49119,74180,86719	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	149319845	149320101	149319983	-	RAMPAGE_only	19	24	225	7.157074	3.245097	chr3	149319875	149320069	LTR|ERVL-MaLR|MLT1M	-	chr3	149318497	149333472	TM4SF18|NM_001184723.1	-	149318497,149322255,149324879,149330329,149333205	149321492,149322436,149325022,149330419,149333472	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	142699996	142699999	142699998	+	High_confidence	10	14	19	0.604375	3.405822	chr8	142699823	142700158	LTR|ERV1|LTR43	-	chr8	142700110	142704170	LY6K|NM_001160355.1	+	142700110,142701599,142703122	142700630,142701713,142704170	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	40636982	40637007	40637003	-	RAMPAGE_only	11	11	41	1.304178	3.576618	chr9	40636831	40637214	LTR|ERVL|MLT2A1	-	chr9	40611637	40747043	MSTRG.29761.2	-	40611637,40635418,40746483	40611740,40642121,40747043	0.878049
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	48270080	48270081	48270080	+	High_confidence	25	26	26	0.827040	4.213661	chr19	48269716	48270187	LTR|ERV1|LTR7C	+	chr19	48270098	48287608	ZNF114|NM_153608.2	+	48270098,48271244,48271726,48279730,48282370,48285760	48270219,48271449,48271828,48279808,48282497,48287608	0.769231
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	40883550	40883584	40883583	+	RAMPAGE_only	2	3	7	0.222665	2.521641	chr5	40883389	40883717	LTR|ERVL-MaLR|THE1A	+	chr5	40841307	40895294	MSTRG.23590.2	+	40841307,40843151,40895066	40841665,40843709,40895294	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	241504042	241504048	241504042	-	RAMPAGE_only	2	3	7	0.222665	2.584963	chr1	241503964	241504054	SINE|MIR|MIRc	+	chr1	241497602	241519761	FH|ENST00000366560.3	-	241497602,241500436,241502442,241504041,241506002,241508602,241511966,241513602,241517181,241519590	241497970,241500590,241502570,241504245,241506168,241508785,241512143,241513713,241517316,241519761	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	17225067	17225068	17225067	+	RAMPAGE_only	16	16	17	0.540757	3.577820	chr11	17224821	17225165	LINE|L2|L2a	+	chr11	17260339	17349980	NUCB2|ENST00000646648.1	+	17260339,17269184,17276007,17282788,17295323,17296103,17301743,17309571,17310824,17311184,17311871,17312027,17315385,17330126,17330901,17337347,17349344	17260501,17269331,17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17337534,17349980	0.823529
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	81192622	81192670	81192654	-	RAMPAGE_only	3	3	16	0.508947	3.323231	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.937500
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	127847132	127847156	127847134	-	High_confidence	6	10	25	0.795230	4.003856	chr9	127847119	127847312	SINE|MIR|MIR	-	chr9	127815011	127847167	ENG|NM_001278138.1	-	127815011,127815942,127817148,127818119,127818715,127819621,127819899,127824303,127824799,127825230,127825694,127826509,127829686,127843093,127846942	127815806,127816053,127817203,127818377,127818832,127819660,127820037,127824446,127824974,127825357,127825860,127826672,127829827,127843245,127847167	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	41948012	41948038	41948037	-	RAMPAGE_only	10	15	31	0.986086	4.168244	chr6	41947353	41948274	LINE|L2|L2a	+	chr6	41934932	41941848	CCND3|NM_001760.4	-	41934932,41936558,41937234,41940369,41941451	41936107,41936695,41937394,41940585,41941848	0.677419
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	148457856	148457859	148457858	-	High_confidence	24	39	42	1.335987	4.701944	chr6	148457676	148457982	LTR|ERVL-MaLR|THE1C	-	chr6	148450215	148457835	MSTRG.26395.1	-	148450215,148457759	148453281,148457835	0.880952
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	82036616	82036628	82036627	-	RAMPAGE_only	3	3	8	0.254474	2.807355	chr7	82036305	82036727	LINE|L2|L2b	+	chr7	82012042	82038235	CACNA2D1|ENST00000492734.1	-	82012042,82013460,82014400,82032796,82038076	82012243,82013510,82014479,82032901,82038235	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	4678086	4678177	4678146	-	High_confidence	167	174	957	30.441421	5.692763	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4635540	4678154	MSTRG.3091.1	-	4635540,4648739,4650406,4657600,4659452,4678048	4635782,4648893,4651203,4657725,4659680,4678154	0.927900
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	15464748	15464764	15464749	-	High_confidence	5	6	11	0.349901	2.921928	chr19	15464743	15464783	SINE|MIR|MIRc	+	chr19	15451623	15464571	RASAL3|ENST00000343625.11	-	15451623,15452044,15452657,15453106,15454148,15454360,15454656,15456103,15456501,15457291,15458327,15458528,15460202,15461059,15461217,15461470,15464030,15464504	15451938,15452108,15452815,15453497,15454267,15454562,15454893,15456248,15456646,15457834,15458426,15458655,15460258,15461121,15461296,15461607,15464377,15464571	0.727273
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	56157332	56157354	56157338	+	High_confidence	6	6	39	1.240559	4.526181	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.794872
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	39026139	39026151	39026139	+	High_confidence	3	3	8	0.254474	3.000000	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	155058722	155058785	155058784	+	High_confidence	32	32	165	5.248521	5.945034	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.963636
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	73144744	73144766	73144752	-	RAMPAGE_only	5	5	13	0.413520	2.617492	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.923077
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	35089888	35089901	35089900	-	High_confidence	9	9	18	0.572566	3.572469	chr17	35089759	35089896	SINE|MIR|MIRb	-	chr17	35009117	35089247	MSTRG.12945.4	-	35009117,35014739,35016369,35017522,35021370,35026373,35063575,35089104	35012149,35014763,35016580,35017606,35021781,35026561,35063850,35089247	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	157533600	157533601	157533600	-	High_confidence	4845	5035	6370	202.624712	6.980580	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157460214	157533606	VEPH1|ENST00000487753.5	-	157460214,157470313,157495211,157533512	157460355,157470529,157495506,157533606	0.938305
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	13419666	13419730	13419729	-	RAMPAGE_only	5	7	39	1.240559	4.580023	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.820513
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	571725	571774	571754	-	High_confidence	17	26	90	2.862830	5.371456	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	104286706	104286707	104286706	+	High_confidence	15	17	19	0.604375	3.511085	chr12	104286543	104286715	DNA|hAT-Charlie|MER5B	+	chr12	104286681	104350307	TXNRD1|NM_003330.3	+	104286681,104288930,104311289,104313244,104315776,104318912,104319469,104321090,104325336,104326346,104327514,104331533,104334236,104339138,104348352	104287346,104289040,104311412,104313317,104315896,104319055,104319585,104321316,104325429,104326423,104327671,104331641,104334332,104339273,104350307	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	118651542	118651608	118651592	-	High_confidence	12	12	47	1.495033	4.718789	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.978723
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	5291816	5291849	5291848	-	RAMPAGE_only	5	5	9	0.286283	3.169925	chr10	5291580	5291975	LTR|ERVL-MaLR|MSTD	+	chr10	5275172	5288470	AKR1C7P|ENST00000305623.12	-	5275172,5277127,5278077,5282775,5283709,5284814,5285844,5288407	5275237,5277294,5278191,5282898,5283787,5284931,5286012,5288470	0.666667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	78306517	78306534	78306517	-	RAMPAGE_only	7	7	16	0.508947	3.750000	chr15	78306427	78306552	LINE|CR1|L3	-	chr15	78283234	78299794	WDR61|ENST00000267973.6	-	78283234,78285260,78286040,78288288,78289618,78289950,78292615,78293166,78294945,78295674,78299561	78283521,78285339,78286133,78288382,78289712,78290099,78292788,78293272,78294973,78295725,78299794	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	188109510	188109603	188109602	-	High_confidence	325	333	865	27.514973	7.650869	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188091372	188109602	MSTRG.23360.5	-	188091372,188097060,188099034,188101055,188104836,188105179,188109242	188091941,188097161,188099175,188101250,188104932,188105587,188109602	0.986127
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	19717844	19717906	19717844	-	High_confidence	5	6	41	1.304178	5.028992	chr16	19717752	19717834	SINE|MIR|MIRb	-	chr16	19706351	19718170	KNOP1|NM_001012991.2	-	19706351,19710508,19711371,19714117,19718157	19707221,19710586,19711440,19715037,19718170	0.878049
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	6208681	6208682	6208681	-	High_confidence	84	84	85	2.703783	3.840252	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.964706
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	58851957	58851958	58851957	+	RAMPAGE_only	21	23	23	0.731612	3.588354	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	5498437	5498488	5498487	+	High_confidence	70	71	153	4.866810	5.789032	chr6	5498468	5498580	LINE|L2|L2b	+	chr6	5498459	5771429	MSTRG.24993.7	+	5498459,5545179,5613168,5771290	5498556,5545340,5613320,5771429	0.823529
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	42	42	42	1.335987	4.766968	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	75180353	75180381	75180380	+	RAMPAGE_only	3	3	6	0.190855	2.584963	chr10	75180300	75180590	SINE|Alu|AluSx4	+	chr10	75111708	75182123	SAMD8|ENST00000372687.4	+	75111708,75150513,75164644,75168540,75176065	75111778,75151106,75164740,75168658,75182123	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	132412478	132412494	132412488	+	RAMPAGE_only	4	4	15	0.477138	3.640224	chr5	132412269	132412578	SINE|Alu|AluSp	+	chr5	132410988	132476010	C5orf56|ENST00000407797.6	+	132410988,132419822,132449649,132470039,132475666	132411041,132419940,132449689,132471054,132476010	0.866667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	21	21	21	0.667994	3.820889	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	87381508	87381509	87381508	-	RAMPAGE_only	5	5	8	0.254474	2.807355	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87326986	87383748	MSTRG.12114.10	-	87326986,87327420,87333885,87335303,87336154,87342876,87343597,87347173,87360294,87383404	87327367,87331510,87334286,87335457,87336264,87342951,87343765,87347250,87360366,87383748	0.625000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	116574111	116574130	116574129	+	RAMPAGE_only	5	5	9	0.286283	2.750000	chr6	116574038	116574376	LINE|RTE-BovB|MamRTE1	-	chr6	116571562	116590361	RWDD1|ENST00000518117.5	+	116571562,116572421,116580294,116584726,116588841,116590271	116571655,116572478,116580360,116584857,116588985,116590361	0.777778
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	75248150	75248151	75248150	-	High_confidence	131	133	170	5.407567	5.555377	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.970588
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	108071115	108071117	108071116	+	RAMPAGE_only	5	7	11	0.349901	3.095795	chrX	108070985	108071173	SINE|MIR|MIR	-	chrX	108072795	108073853	VSIG1|ENST00000479635.1	+	108072795,108073249	108072832,108073853	0.727273
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	82081606	82081607	82081606	-	High_confidence	59	59	81	2.576547	5.305400	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.567901
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	108022728	108022798	108022740	+	High_confidence	9	9	71	2.258454	3.276971	chrX	108022697	108023112	LTR|ERVL-MaLR|MSTB1	+	chrX	108022757	108078882	MSTRG.31428.1	+	108022757,108058037,108066935,108072676,108073249,108076076,108077047	108022834,108058201,108067134,108072832,108073369,108076218,108078882	0.971831
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	197299316	197299330	197299316	-	High_confidence	6	6	24	0.763421	4.262692	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.916667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	66354122	66354123	66354122	-	RAMPAGE_only	11	11	11	0.349901	3.277613	chr15	66354028	66355027	LINE|L2|L2a	+	chr15	66336383	66356685	TIPIN|ENST00000566524.5	-	66336383,66341149,66349059,66349314,66352128,66352814,66356638	66337181,66341356,66349123,66349437,66352207,66352955,66356685	0.909091
mammary_microvascular_endothelial_cell_female_adult_26_years	chr18	7946867	7946898	7946878	+	High_confidence	38	38	134	4.262435	5.462112	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.850746
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	41871701	41871833	41871832	-	RAMPAGE_only	16	19	93	2.958257	5.626322	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.698925
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	144103584	144103585	144103584	-	High_confidence	5	5	8	0.254474	2.750000	chr8	144103289	144103558	SINE|MIR|MIR	-	chr8	144098636	144103756	MSTRG.29304.2	-	144098636,144098865,144099080,144099276,144099509,144099702,144099928,144103050,144103552	144098788,144098994,144099199,144099430,144099618,144099844,144100069,144103225,144103756	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	50757091	50757150	50757129	+	High_confidence	7	7	44	1.399606	4.723406	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.795455
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	9140390	9140428	9140393	+	High_confidence	44	44	196	6.234607	6.168028	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.739796
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	31494690	31494743	31494690	+	High_confidence	9	9	26	0.827040	4.053661	chr6	31494550	31494850	SINE|Alu|AluSp	+	chr6	31494880	31511124	MICB|NM_001289160.1	+	31494880,31505616,31506142,31507021,31507399,31509781	31494995,31505871,31506430,31507300,31507531,31511124	0.884615
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	76668549	76668569	76668549	-	RAMPAGE_only	3	3	8	0.254474	2.521641	chr11	76668182	76668643	LINE|L2|L2a	+	chr11	76661034	76670000	LRRC32|ENST00000421973.1	-	76661034,76665870,76669761	76661508,76665958,76670000	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	183163620	183163621	183163620	-	High_confidence	16	16	18	0.572566	3.461320	chr3	183163266	183163587	SINE|Alu|AluSc5	-	chr3	183153900	183163839	LAMP3|ENST00000476015.1	-	183153900,183162606,183163619	183154391,183162730,183163839	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	152317444	152317453	152317444	+	RAMPAGE_only	16	16	28	0.890658	3.176992	chr3	152317330	152317619	SINE|Alu|AluSz	-	chr3	152300197	152459302	MBNL1|ENST00000464596.5	+	152300197,152414940,152432716,152445281,152447619,152459270	152300367,152415111,152432920,152445539,152447773,152459302	0.821429
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	55618850	55618873	55618850	-	High_confidence	6	6	13	0.413520	3.251629	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.923077
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	67395976	67395977	67395976	-	RAMPAGE_only	6	6	9	0.286283	2.500000	chr14	67395897	67395987	SINE|MIR|MIRb	+	chr14	67388251	67412071	PLEK2|ENST00000553387.1	-	67388251,67390662,67392325,67392661,67393149,67397661,67412017	67388302,67390746,67392427,67392849,67393241,67397826,67412071	0.888889
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	77491273	77491310	77491273	-	High_confidence	9	9	35	1.113323	3.870004	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77453865	77491285	WDR41|ENST00000504895.5	-	77453865,77459061,77463094,77464760,77489456,77491192	77453928,77459124,77463226,77464809,77489572,77491285	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	50756986	50757091	50756986	-	RAMPAGE_only	4	4	42	1.335987	4.576492	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr21	45004518	45004519	45004518	-	High_confidence	8	8	11	0.349901	2.921928	chr21	45004415	45004509	LINE|L1|L1MB7	-	chr21	44999207	45004727	PICSAR|ENST00000615826.1	-	44999207,45004443	44999656,45004727	0.909091
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	179877281	179877312	179877311	-	High_confidence	2	2	9	0.286283	3.000000	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179859029	179877782	MSTRG.2423.5	-	179859029,179860412,179877238,179877692	179859933,179865854,179877373,179877782	0.555556
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	33812305	33812326	33812325	-	RAMPAGE_only	6	6	18	0.572566	3.572469	chr20	33812158	33812326	SINE|MIR|MIR3	+	chr20	33787372	33811099	ZNF341-AS1|NR_110623.1	-	33787372,33795513,33797917,33811039	33787777,33795616,33797995,33811099	0.722222
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	39809803	39809914	39809858	-	High_confidence	29	37	152	4.835001	5.163504	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.888158
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	103140842	103140921	103140842	-	RAMPAGE_only	2	2	19	0.604375	3.683542	chr4	103140692	103140796	LINE|L1|L1MC	-	chr4	103105812	103198408	CENPE|ENST00000380026.7	-	103105812,103108802,103110827,103114454,103116576,103120147,103122870,103132692,103133694,103136140,103138350,103140255,103140813,103141749,103143247,103144330,103145049,103145522,103145828,103147355,103148843,103149117,103151218,103153046,103158299,103158613,103159009,103160624,103161085,103161334,103163136,103174735,103175959,103176898,103180310,103181336,103182761,103183200,103185809,103194228,103194373,103194602,103195113,103195919,103196162,103196758,103198263	103106316,103109089,103111011,103114552,103116689,103120333,103123089,103132896,103133892,103136359,103138452,103140414,103141104,103141908,103143406,103144618,103145334,103145681,103146107,103147646,103148999,103149408,103151377,103153250,103158458,103158886,103159324,103160779,103161251,103161457,103163256,103174903,103176048,103177046,103180469,103181456,103182891,103183288,103185861,103194294,103194441,103194684,103195233,103196038,103196252,103196850,103198408	0.894737
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	55754859	55754888	55754859	-	High_confidence	23	23	59	1.876744	4.822824	chr4	55754611	55754914	SINE|Alu|AluSx3	+	chr4	55582224	55754868	MSTRG.22589.2	-	55582224,55599141,55600521,55605274,55607297,55607436,55609119,55630401,55754765	55582237,55599181,55600575,55605349,55607348,55607466,55609179,55630460,55754868	0.779661
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	193230138	193230145	193230138	+	RAMPAGE_only	3	3	7	0.222665	2.584963	chr3	193229952	193230170	SINE|MIR|MIRc	-	chr3	193241124	193270855	HRASLS|ENST00000264735.2	+	193241124,193255650,193262969,193270603	193241533,193255789,193263235,193270855	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	84072126	84072158	84072136	-	RAMPAGE_only	45	66	204	6.489080	5.041957	chr16	84072064	84072464	LINE|L1|L1MB7	+	chr16	84053765	84075433	MBTPS1|ENST00000570064.5	-	84053765,84056004,84059301,84060681,84063304,84065689,84066488,84067666,84068338,84069865,84070587,84074596	84054645,84056135,84059428,84060813,84063445,84065767,84066613,84067823,84068454,84070038,84070776,84075433	0.931373
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	150640011	150640042	150640041	+	High_confidence	33	33	129	4.103389	6.263252	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150640011	150656757	MSTRG.24629.8	+	150640011,150647943,150656403	150640134,150650303,150656757	0.992248
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	93773408	93773412	93773411	+	High_confidence	241	281	584	18.576583	6.543735	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93773420	93850667	MSTRG.7167.13	+	93773420,93798644,93849969	93773486,93798816,93850667	0.895548
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	77736978	77737025	77736978	-	High_confidence	4	4	20	0.636184	3.884184	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.850000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	149896010	149896011	149896010	-	High_confidence	12	12	15	0.477138	3.467720	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.933333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	33864030	33864126	33864125	+	RAMPAGE_only	8	8	94	2.990066	4.215079	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	20685285	20685320	20685297	-	High_confidence	42	89	305	9.701811	6.778555	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20664013	20685283	MSTRG.463.1	-	20664013,20666213,20670420,20671937,20682652,20684808,20685251	20664762,20666331,20670491,20672196,20682884,20685020,20685283	0.963934
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	128378060	128378091	128378060	+	RAMPAGE_only	3	3	10	0.318092	2.641604	chr9	128378027	128378106	LINE|RTE-BovB|MamRTE1	+	chr9	128371380	128392016	URM1|ENST00000452446.2	+	128371380,128378035,128387815,128389260	128371415,128378106,128387897,128392016	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	123060135	123060251	123060168	-	High_confidence	42	53	611	19.435432	5.786168	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.657938
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	54310444	54310462	54310457	-	High_confidence	3	4	14	0.445329	3.664498	chr5	54310446	54310538	DNA|TcMar-Tigger|Tigger15a	+	chr5	53886444	54310415	ARL15|ENST00000510591.6	-	53886444,54113201,54154579,54171783,54310294	53886713,54113410,54154639,54171928,54310415	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	19668150	19668174	19668173	+	High_confidence	14	14	44	1.399606	5.054172	chr19	19668164	19668579	LTR|ERV1|LTR21B	-	chr19	19668182	19683510	MSTRG.15328.1	+	19668182,19677863,19678725,19679180	19668207,19677986,19678786,19683510	0.977273
mammary_microvascular_endothelial_cell_female_adult_26_years	chr18	75280662	75280706	75280681	+	RAMPAGE_only	69	72	143	4.548718	5.482652	chr18	75280540	75280747	SINE|MIR|MIRb	+	chr18	75282863	75289943	TSHZ1|ENST00000584217.1	+	75282863	75289943	0.958042
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	283491	283509	283506	+	High_confidence	11	23	58	1.844935	5.115303	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	303123	MSTRG.30688.10	+	283478,284166,288732,290647,291498,293034,299096	283520,284314,288869,290776,291654,293218,303123	0.931034
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	132134106	132134144	132134141	+	High_confidence	4	4	25	0.795230	3.882045	chr6	132134140	132134291	DNA|hAT-Tip100|MamTip2	+	chr6	132133977	132169374	LINC01013|NR_038981.1	+	132133977,132154655,132169000	132134483,132154777,132169374	0.720000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	65570509	65570536	65570509	+	High_confidence	8	8	41	1.304178	4.879506	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.512195
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	93582539	93582552	93582539	-	RAMPAGE_only	3	3	8	0.254474	2.521641	chr1	93582523	93582592	LINE|L2|L2	+	chr1	93561786	93585082	BCAR3|ENST00000539242.5	-	93561786,93567278,93567739,93571669,93576013,93582300,93584017,93584971	93562419,93567491,93567851,93571841,93576129,93582953,93584121,93585082	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	33711384	33711385	33711384	-	RAMPAGE_only	7	7	11	0.349901	3.321928	chr11	33711302	33711405	LINE|L1|L1MB7	+	chr11	33708869	33719611	CD59|ENST00000528987.1	-	33708869,33717369	33710343,33719611	0.545455
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	109053951	109053957	109053956	-	High_confidence	11	16	29	0.922467	4.351823	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.965517
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	1177807	1177823	1177807	-	RAMPAGE_only	3	4	12	0.381711	3.418296	chr19	1177653	1177788	SINE|MIR|MIR	-	chr19	1107633	1174283	SBNO2|NM_014963.2	-	1107633,1108778,1109134,1109291,1109505,1109682,1110744,1111018,1111505,1111995,1112188,1112401,1112817,1113534,1114230,1116020,1116828,1117322,1119010,1119515,1119905,1122138,1122467,1122657,1122893,1123533,1123941,1127603,1147308,1149368,1154183,1174171	1108704,1108969,1109211,1109423,1109598,1109777,1110888,1111093,1111614,1112067,1112301,1112537,1112949,1113704,1114422,1116103,1116926,1117499,1119164,1119621,1120023,1122282,1122558,1122791,1123045,1123639,1124022,1127765,1147420,1149442,1154402,1174283	0.833333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	6918663	6918680	6918679	-	High_confidence	20	20	46	1.463224	4.997083	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.717391
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	65642883	65642933	65642906	+	High_confidence	28	43	196	6.234607	6.505540	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	29643317	29643331	29643320	-	RAMPAGE_only	10	12	23	0.731612	3.795089	chr17	29643278	29643403	LTR|ERVL-MaLR|MLT1L	+	chr17	29630799	29761417	SSH2|ENST00000649863.1	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677738,29684684,29695523,29703062,29761417	0.913043
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	11201309	11201328	11201309	-	RAMPAGE_only	10	10	21	0.667994	4.201841	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	144349109	144349121	144349109	+	RAMPAGE_only	19	20	36	1.145132	4.250572	chr6	144349009	144349307	SINE|Alu|AluY	-	chr6	144344140	144828855	MSTRG.26370.8	+	144344140,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789	144344304,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855	0.861111
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	221501596	221501598	221501597	-	High_confidence	3	5	8	0.254474	2.521641	chr2	221501442	221501654	SINE|MIR|MIRb	-	chr2	221436456	221501584	MSTRG.18252.7	-	221436456,221437060,221442828,221443492,221446122,221455546,221456612,221457865,221482351,221501016,221501536	221436608,221437122,221443014,221443606,221446181,221455658,221456772,221457990,221482690,221501172,221501584	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	64873908	64873912	64873911	-	RAMPAGE_only	3	3	7	0.222665	2.807355	chr1	64873886	64874042	DNA|TcMar-Tc2|MER104	+	chr1	64833228	64966504	JAK1|ENST00000342505.4	-	64833228,64835395,64836097,64837931,64838464,64839602,64841244,64841450,64844063,64844753,64845512,64846648,64847531,64850803,64855508,64857655,64860104,64864786,64866865,64869310,64873369,64879024,64883276,64886258,64966332	64834657,64835506,64836215,64838104,64838589,64839795,64841339,64841601,64844215,64844889,64845640,64846736,64847675,64850910,64855698,64857779,64860262,64864972,64867208,64869474,64873523,64879148,64883475,64886341,64966504	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	119525229	119525278	119525242	-	RAMPAGE_only	4	4	20	0.636184	4.142664	chr4	119525094	119525324	LINE|L2|L2c	+	chr4	119500822	119519099	PDE5A|ENST00000503412.1	-	119500822,119502580,119504535,119505854,119507603,119511046,119519044	119501253,119502655,119504599,119505932,119507704,119511134,119519099	0.550000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	59619888	59619935	59619894	+	High_confidence	1580	1833	7961	253.233176	5.793740	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.954151
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	99410041	99410050	99410049	+	High_confidence	3	3	6	0.190855	2.584963	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	147937574	147937599	147937574	+	RAMPAGE_only	8	8	17	0.540757	3.057476	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.705882
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	129256120	129256146	129256145	+	RAMPAGE_only	5	5	21	0.667994	3.784942	chr3	129256170	129256401	DNA|hAT|MamRep38	+	chr3	129260226	129265675	COPG1|ENST00000504547.1	+	129260226,129260618,129263903,129265548	129260400,129260807,129263999,129265675	0.523810
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	80059918	80059933	80059918	+	High_confidence	110	117	366	11.642173	5.268803	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.994536
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	112956793	112956813	112956812	+	High_confidence	8	8	22	0.699803	3.921928	chr1	112956705	112956908	SINE|MIR|MIR	+	chr1	112956460	112975430	SLC16A1-AS1|ENST00000428411.5	+	112956460,112960476,112968034	112957722,112960575,112975430	0.545455
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	45424367	45424387	45424384	-	High_confidence	9	17	66	2.099408	5.483606	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	0.984848
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	220032401	220032425	220032401	-	RAMPAGE_only	2	2	10	0.318092	3.169925	chr1	220032081	220032353	SINE|Alu|AluY	-	chr1	219987295	220046451	EPRS|ENST00000609181.5	-	219987295,219988589,219996982,220001137,220005247,220006105,220007201,220010945,220018125,220018448,220018994,220019987,220022346,220024263,220025131,220030385,220032386,220033501,220034913,220040184,220046342	219987404,219988823,219997342,220001255,220005360,220006313,220007338,220011056,220018146,220018508,220019079,220020221,220022518,220024456,220025258,220030480,220032526,220033658,220035013,220040269,220046451	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	85778400	85778467	85778400	+	High_confidence	37	41	130	4.135198	5.026762	chr4	85778413	85778594	SINE|MIR|MIR3	+	chr4	85778697	86002670	ARHGAP24|NM_001042669.1	+	85778697,85923647,85942065,85972035,85974887,85977569,85994582,86000478	85778965,85923770,85942273,85972168,85974961,85977691,85995657,86002670	0.961538
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	18794063	18794078	18794077	+	High_confidence	6	6	15	0.477138	3.235926	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.933333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	16102050	16102593	16102303	+	RAMPAGE_only	171	183	4516	143.650424	5.231235	chr19	16102068	16102357	SINE|Alu|AluSz	+	chr19	16088710	16102946	TPM4|ENST00000591645.2	+	16088710,16089044,16093535,16093683,16101263	16088849,16089120,16093598,16093753,16102946	0.994686
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	32479848	32479866	32479865	+	High_confidence	3	3	8	0.254474	2.500000	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	9792262	9792278	9792262	-	High_confidence	3	3	11	0.349901	2.921928	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.636364
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	81995887	81995952	81995951	+	High_confidence	200	223	484	15.395661	7.422040	chr16	81995714	81996778	LINE|L2|L2c	-	chr16	81995901	82010676	MSTRG.12026.2	+	81995901,82004557,82007466	81996054,82004789,82010676	0.690083
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	80468552	80468584	80468552	+	RAMPAGE_only	8	8	16	0.508947	3.625000	chr10	80468554	80468709	DNA|hAT-Charlie|MER5A1	+	chr10	80459301	80518041	TSPAN14|ENST00000372156.5	+	80459301,80463087,80466440,80468546,80489216,80504727,80507227,80509300,80512143,80514018,80516203,80517904	80459507,80463127,80466538,80468687,80489314,80504778,80507374,80509471,80512269,80514063,80516323,80518041	0.937500
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	58306141	58306162	58306141	+	High_confidence	3	5	14	0.445329	2.985228	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.571429
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	70993073	70993074	70993073	+	High_confidence	7	7	7	0.222665	2.807355	chr4	70992983	70993102	SINE|MIR|MIR	+	chr4	70993438	71030914	DCK|ENST00000286648.9	+	70993438,70998066,71022366,71023558,71025815,71026664,71029351	70993926,70998182,71022560,71023706,71025931,71026755,71030914	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	129488726	129488857	129488856	+	High_confidence	80	83	616	19.594478	5.783228	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.977273
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	44722856	44722888	44722882	-	High_confidence	92	96	453	14.409575	6.696232	chr19	44722780	44723070	LINE|L2|L2b	-	chr19	44715663	44722911	MSTRG.15815.5	-	44715663,44719229,44722697	44716180,44719621,44722911	0.675497
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	25212560	25212587	25212571	+	RAMPAGE_only	8	8	28	0.890658	3.208966	chr22	25212608	25212846	LTR|ERVL|LTR16C	+	chr22	25219521	25231869	CRYBB2|ENST00000398215.2	+	25219521,25221403,25224917,25227852,25229435,25231603	25219666,25221483,25225036,25227985,25229578,25231869	0.928571
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	28637853	28637888	28637853	-	RAMPAGE_only	5	6	16	0.508947	3.030639	chr17	28637660	28637803	SINE|Alu|AluSx3	-	chr17	28614439	28645131	KIAA0100|ENST00000528896.6	-	28614439,28615663,28616095,28616378,28616617,28616888,28617231,28618790,28619653,28619859,28620508,28620987,28621398,28623759,28624232,28628264,28631478,28631819,28632048,28632941,28633282,28633548,28633894,28634516,28636964,28637835,28638251,28638523,28639314,28639574,28639900,28640559,28641888,28642274,28642868,28643163,28643609,28644057,28644988	28615246,28615798,28616197,28616509,28616753,28616999,28617318,28618971,28619775,28620015,28620630,28621170,28621498,28623966,28624390,28628559,28631681,28631919,28632239,28633162,28633401,28633751,28634086,28635609,28637170,28638094,28638415,28638642,28639460,28639642,28640025,28640683,28642078,28642335,28642987,28643311,28643659,28644187,28645131	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	16712889	16712923	16712889	-	High_confidence	9	9	51	1.622270	4.931750	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.980392
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	30971762	30971763	30971762	+	High_confidence	6	6	9	0.286283	3.169925	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	150765956	150765964	150765957	-	High_confidence	18	22	36	1.145132	4.852169	chr1	150765956	150766249	SINE|Alu|AluJr	+	chr1	150730195	150765957	CTSS|NM_004079.4	-	150730195,150747776,150750005,150751780,150755000,150757857,150764637,150765697	150733145,150747879,150750171,150752008,150755150,150757980,150764764,150765957	0.944444
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	102431159	102431180	102431179	-	High_confidence	6	6	11	0.349901	3.277613	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.818182
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	181247598	181247599	181247598	-	High_confidence	9	9	9	0.286283	2.503258	chr5	181247404	181247700	SINE|Alu|AluY	+	chr5	181238119	181247576	RACK1|ENST00000510199.5	-	181238119,181239066,181239486,181241491,181242173,181247123	181238239,181239177,181239582,181241639,181242345,181247576	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	44722782	44722783	44722782	-	High_confidence	9	9	9	0.286283	2.725481	chr19	44722602	44722744	SINE|MIR|MIRc	-	chr19	44715663	44722911	MSTRG.15815.5	-	44715663,44719229,44722697	44716180,44719621,44722911	0.555556
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	154975497	154975525	154975497	+	High_confidence	4	4	24	0.763421	3.913977	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.916667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	76670081	76670092	76670081	-	High_confidence	8	8	16	0.508947	3.456565	chr11	76670078	76670137	DNA|hAT-Tip100|MamTip2	-	chr11	76657523	76670000	LRRC32|NM_005512.2	-	76657523,76665870,76669761	76661508,76665958,76670000	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	144349254	144349284	144349283	+	RAMPAGE_only	6	8	28	0.890658	4.396292	chr6	144349009	144349307	SINE|Alu|AluY	-	chr6	144344140	144828855	MSTRG.26370.8	+	144344140,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789	144344304,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855	0.964286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	50226714	50226728	50226714	+	High_confidence	7	7	18	0.572566	3.836592	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	10703417	10703435	10703434	+	RAMPAGE_only	3	3	8	0.254474	2.521641	chr6	10703479	10703810	DNA|TcMar-Tigger|Tigger4b	+	chr6	10694954	10709739	PAK1IP1|NM_017906.2	+	10694954,10697323,10702368,10702564,10703404,10704506,10704746,10707414,10708952,10709237	10695069,10697486,10702489,10702639,10703457,10704652,10704844,10707514,10709076,10709739	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	64884660	64884661	64884660	-	RAMPAGE_only	6	7	8	0.254474	2.807355	chr1	64884516	64884939	LINE|L2|L2b	+	chr1	64833228	64966504	JAK1|ENST00000342505.4	-	64833228,64835395,64836097,64837931,64838464,64839602,64841244,64841450,64844063,64844753,64845512,64846648,64847531,64850803,64855508,64857655,64860104,64864786,64866865,64869310,64873369,64879024,64883276,64886258,64966332	64834657,64835506,64836215,64838104,64838589,64839795,64841339,64841601,64844215,64844889,64845640,64846736,64847675,64850910,64855698,64857779,64860262,64864972,64867208,64869474,64873523,64879148,64883475,64886341,64966504	0.625000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	11864387	11864439	11864387	-	RAMPAGE_only	2	2	19	0.604375	4.169925	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.736842
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	50757212	50757248	50757247	+	High_confidence	20	20	59	1.876744	5.187396	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.864407
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	73736756	73736757	73736756	-	High_confidence	10	10	10	0.318092	2.846439	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73729889	73737335	MSTRG.16968.5	-	73729889,73730559,73732162,73732583,73734428,73737301	73730029,73730736,73732285,73732704,73734588,73737335	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	29280853	29280896	29280865	-	High_confidence	5	5	34	1.081513	4.631293	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.588235
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	3536822	3536875	3536827	-	High_confidence	5	5	55	1.749507	4.925480	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.927273
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	53047220	53047229	53047224	+	RAMPAGE_only	4	6	15	0.477138	3.664498	chr1	53046851	53047387	LTR|ERVL-MaLR|MLT1E1A	-	chr1	53014973	53051610	SCP2|ENST00000488965.1	+	53014973,53027968,53047857	53015043,53028071,53051610	0.933333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	114705716	114705839	114705716	-	RAMPAGE_only	44	48	183	5.821087	4.380545	chr1	114705629	114705788	SINE|Alu|AluSx3	-	chr1	114704463	114716894	NRAS|NM_002524.4	-	114704463,114708153,114708530,114709568,114713799,114716049,114716657	114708050,114708192,114708654,114709728,114713978,114716177,114716894	0.983607
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	100549378	100549416	100549403	+	RAMPAGE_only	4	4	19	0.604375	3.905765	chr9	100549068	100549451	LTR|ERVL-MaLR|MSTA	-	chr9	100473237	100577636	TMEFF1|NM_003692.4	+	100473237,100498764,100509004,100513306,100516674,100547743,100550094,100561396,100572517,100576515	100473740,100498874,100509134,100513333,100516771,100547892,100550160,100561520,100572676,100577636	0.789474
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	123469400	123469403	123469402	+	RAMPAGE_only	10	12	17	0.540757	2.905639	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123480737	123594838	GRAMD1B|ENST00000633087.1	+	123480737,123577366,123584311,123594081,123594734	123480893,123577577,123584332,123594166,123594838	0.823529
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	36500423	36500424	36500423	-	RAMPAGE_only	4	6	7	0.222665	2.584963	chr11	36500005	36500736	LINE|L2|L2a	-	chr11	36489172	36510256	TRAF6|ENST00000348124.5	-	36489172,36492550,36494975,36497107,36498489,36501219,36501718,36510047	36490650,36492628,36495047,36497266,36498640,36501537,36501811,36510256	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	39082995	39083066	39083065	+	RAMPAGE_only	9	10	62	1.972171	4.936816	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.725806
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	93134973	93134984	93134983	-	RAMPAGE_only	3	3	7	0.222665	2.521641	chr7	93134901	93134953	SINE|5S-Deu-L2|AmnSINE1	-	chr7	93131032	93148345	SAMD9L|ENST00000437805.5	-	93131032,93144731,93145384,93145908,93146882,93148193	93135991,93144833,93145532,93146040,93147146,93148345	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	222600008	222600036	222600010	-	RAMPAGE_only	4	7	13	0.413520	3.251629	chr2	222599989	222600062	LINE|RTE-BovB|MamRTE1	-	chr2	222570535	222656337	FARSB|ENST00000281828.6	-	222570535,222599927,222613810,222619644,222623649,222624271,222624713,222628836,222630112,222631603,222633198,222634390,222639579,222640861,222642850,222648739,222656015	222572022,222600083,222613928,222619737,222623730,222624479,222624775,222628888,222630174,222631674,222633307,222634541,222639695,222640931,222643005,222648795,222656337	0.923077
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	44662150	44662373	44662348	+	RAMPAGE_only	29	31	198	6.298225	4.765306	chr19	44662259	44662524	SINE|Alu|AluJb	-	chr19	44643913	44663583	PVR|ENST00000187830.2	+	44643913,44647299,44649808,44653899,44657761,44658741,44661291,44661739	44644175,44647570,44650105,44654017,44657910,44658900,44661323,44663583	0.974747
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	20204028	20204080	20204028	-	RAMPAGE_only	6	6	16	0.508947	3.773557	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.937500
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	834261	834278	834261	+	RAMPAGE_only	4	4	8	0.254474	2.521641	chr11	834112	834386	SINE|Alu|AluSx1	+	chr11	832985	836525	CD151|ENST00000525868.5	+	832985,834457,836062,836250	833026,834591,836153,836525	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	79446868	79446869	79446868	-	RAMPAGE_only	10	10	13	0.413520	3.251629	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.692308
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	64870525	64870637	64870525	-	High_confidence	26	29	184	5.852896	4.621911	chr9	64870414	64870933	LTR|ERV1|LTR10A	-	chr9	64762437	64870650	MSTRG.29828.4	-	64762437,64843234,64870090	64765351,64843312,64870650	0.597826
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	30425556	30425561	30425556	+	High_confidence	5	5	14	0.445329	3.546594	chr22	30425519	30425631	SINE|MIR|MIRb	-	chr22	30425529	30429053	MTFP1|ENST00000266263.9	+	30425529,30426716,30427170,30428461	30425946,30426844,30427403,30429053	0.785714
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	46243267	46243287	46243267	-	RAMPAGE_only	10	10	25	0.795230	3.970176	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.960000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	59202882	59202929	59202882	+	RAMPAGE_only	3	5	16	0.508947	3.452820	chr17	59202829	59203046	SINE|Alu|AluJr	+	chr17	59155498	59206709	PRR11|NM_018304.3	+	59155498,59169747,59185053,59185439,59193491,59194756,59195330,59197543,59197692,59201562	59155805,59169880,59185204,59185562,59193734,59194855,59195443,59197603,59197789,59206709	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	119704554	119704565	119704554	-	RAMPAGE_only	36	37	125	3.976152	5.934041	chr12	119704528	119704734	DNA|hAT-Charlie|MER20	-	chr12	119688210	119784361	CIT|ENST00000537607.5	-	119688210,119690150,119697658,119697975,119700744,119701623,119701849,119704362,119708178,119710250,119710539,119712177,119712590,119713202,119713467,119714196,119718244,119718698,119720477,119721308,119728501,119730494,119734163,119735159,119742410,119752049,119757370,119758590,119760938,119767086,119770784,119772769,119775785,119776357,119776671,119782517,119783907,119784188	119688255,119690454,119697838,119698054,119700825,119701752,119701958,119704455,119708318,119710386,119710620,119712347,119712695,119713294,119713648,119714334,119718409,119718816,119720585,119721449,119728606,119730630,119734357,119735357,119742464,119752247,119757545,119758700,119761055,119767182,119770910,119772910,119775839,119776408,119776842,119782637,119784051,119784361	0.912000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	34220643	34220660	34220659	+	RAMPAGE_only	9	9	29	0.922467	4.444188	chr3	34220535	34220671	LTR|ERVL|ERVL-B4-int	-	chr3	34203243	34268811	AC123023.1|ENST00000455974.1	+	34203243,34268321	34203308,34268811	0.551724
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	33216816	33216817	33216816	-	RAMPAGE_only	8	8	8	0.254474	2.500000	chr10	33216784	33216910	LINE|L2|L2c	+	chr10	33194371	33213561	NRP1|ENST00000466932.1	-	33194371,33213391	33194724,33213561	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	154287469	154287470	154287469	+	High_confidence	11	12	17	0.540757	3.852169	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	0.823529
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	105329640	105329671	105329670	-	High_confidence	7	7	29	0.922467	4.254196	chr2	105329666	105329774	LTR|ERV1|LTR2752	-	chr2	105264413	105329707	MSTRG.17238.3	-	105264413,105267216,105269271,105272854,105273543,105275559,105277613,105280381,105284315,105296355,105298510,105307613,105329624	105267188,105267559,105269705,105273014,105273690,105275703,105277671,105280723,105284398,105296510,105298705,105308315,105329707	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	47420632	47420642	47420632	-	RAMPAGE_only	2	3	8	0.254474	2.521641	chr11	47420478	47420646	SINE|MIR|MIRb	+	chr11	47418768	47426266	PSMC3|ENST00000602866.5	-	47418768,47419115,47420263,47420630,47422573,47422829,47424045,47424428,47424606,47425120,47425866,47426204	47418945,47419197,47420409,47420727,47422722,47422973,47424183,47424491,47424711,47425246,47425950,47426266	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	110170650	110170776	110170695	+	RAMPAGE_only	19	19	118	3.753488	5.967276	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	111449965	111449996	111449965	+	RAMPAGE_only	5	5	13	0.413520	3.546594	chr12	111449926	111450222	SINE|Alu|AluSq2	-	chr12	111434861	111451623	SH2B3|NM_001291424.1	+	111434861,111446752,111446941,111447124,111447329,111447655,111447982	111435027,111446854,111447033,111447219,111447544,111447827,111451623	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	52100527	52100544	52100527	-	High_confidence	6	6	41	1.304178	4.754378	chr15	52100279	52100861	LTR|ERVL|MER73	-	chr15	52056674	52100523	AC023906.5|ENST00000558607.1	-	52056674,52100469	52057255,52100523	0.756098
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	62600186	62600250	62600186	-	High_confidence	7	7	22	0.699803	3.916127	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.545455
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	117674439	117674481	117674452	-	RAMPAGE_only	24	24	61	1.940362	5.030700	chr12	117674347	117674707	LINE|L1|L1MB5	-	chr12	117517705	117677251	KSR2|ENST00000545002.1	-	117517705,117524851,117527070,117530940,117531665,117539718,117555168,117558505,117579118,117582289,117667473,117674282,117677193	117517852,117525219,117527119,117531013,117531707,117539887,117555293,117558573,117579202,117582359,117667658,117674356,117677251	0.885246
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	98010583	98010610	98010583	+	RAMPAGE_only	17	18	69	2.194836	5.386839	chr9	98010508	98010692	LINE|L2|L2b	-	chr9	97983360	98015943	ANP32B|ENST00000339399.4	+	97983360,97994630,97998555,98004963,98011270,98012420,98015363	97983609,97994780,97998678,98005153,98011389,98012472,98015943	0.898551
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	133369942	133370015	133369963	-	RAMPAGE_only	4	4	30	0.954277	4.189898	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	163509532	163509547	163509546	+	RAMPAGE_only	4	4	10	0.318092	3.121928	chr5	163509415	163509569	DNA|hAT-Charlie|MER5A	+	chr5	163505638	163516615	MAT2B|ENST00000520449.1	+	163505638,163512001,163513841,163516517	163505749,163512196,163513994,163516615	0.700000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	143558019	143558020	143558019	+	High_confidence	15	16	16	0.508947	3.773557	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	130049792	130049799	130049792	+	RAMPAGE_only	5	5	13	0.413520	3.546594	chr6	130049727	130050071	LINE|L2|L2-1_AMi	+	chr6	130020556	130141439	L3MBTL3|ENST00000368136.2	+	130020556,130022226,130042684,130049281,130049755,130051248,130052858,130055170,130057405,130060035,130066352,130068329,130070975,130078557,130083619,130086139,130092744,130094264,130104425,130120878,130133451,130133842,130139609	130020668,130022305,130042801,130049393,130049830,130051408,130052991,130055255,130057497,130060140,130066488,130068421,130071127,130078634,130083705,130086250,130092859,130094367,130104575,130120958,130133621,130133905,130141439	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	4355592	4355593	4355592	-	High_confidence	171	172	172	5.471185	5.050909	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.941860
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	102431237	102431249	102431241	-	High_confidence	11	11	47	1.495033	4.898456	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.893617
mammary_microvascular_endothelial_cell_female_adult_26_years	chr18	9117556	9117618	9117556	+	RAMPAGE_only	48	49	306	9.733620	6.791036	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	0.898693
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	76670258	76670283	76670258	-	High_confidence	2	2	9	0.286283	3.169925	chr11	76670227	76670395	SINE|MIR|MIR3	+	chr11	76661034	76670000	LRRC32|ENST00000421973.1	-	76661034,76665870,76669761	76661508,76665958,76670000	0.888889
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	104030726	104030727	104030726	+	High_confidence	71	71	90	2.862830	5.638536	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.966667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	55371804	55371841	55371804	-	RAMPAGE_only	2	3	14	0.445329	3.085055	chr15	55371592	55371758	SINE|MIR|MIRb	-	chr15	55358838	55372952	CCPG1|ENST00000568372.5	-	55358838,55365187,55371792	55360944,55365309,55372952	0.928571
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	20423696	20423704	20423697	-	RAMPAGE_only	7	10	24	0.763421	4.061482	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.541667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	40746918	40746926	40746918	-	High_confidence	34	37	98	3.117303	4.529266	chr9	40746807	40747326	LTR|ERV1|LTR10A	-	chr9	40624352	40747043	MSTRG.29761.3	-	40624352,40640477,40719769	40624714,40642121,40747043	0.928571
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	29801515	29801540	29801539	-	RAMPAGE_only	4	4	15	0.477138	3.773557	chr15	29801463	29801760	SINE|Alu|AluYa5	-	chr15	29699366	29821548	TJP1|NM_001301026.1	-	29699366,29704161,29705527,29708558,29710830,29716610,29718020,29718265,29720357,29726378,29726780,29727936,29732432,29732630,29733093,29734273,29737263,29741330,29742641,29761138,29761600,29762334,29766265,29772063,29773232,29800645,29820526,29821415	29701689,29704305,29705745,29709036,29711000,29716838,29718118,29719138,29720708,29726479,29726991,29728019,29732528,29732815,29733313,29734382,29737414,29741436,29742781,29761286,29761769,29762438,29766542,29772166,29773357,29800702,29820674,29821548	0.933333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	40058827	40058843	40058842	+	RAMPAGE_only	3	3	9	0.286283	2.947703	chr1	40058793	40059037	SINE|MIR|MIRc	+	chr1	40040881	40060130	CAP1|ENST00000446031.1	+	40040881,40059333,40060066	40040965,40059458,40060130	0.777778
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	101308293	101308325	101308299	+	High_confidence	7	11	41	1.304178	4.735362	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.902439
mammary_microvascular_endothelial_cell_female_adult_26_years	chr13	45206611	45206625	45206611	+	High_confidence	3	3	8	0.254474	2.807355	chr13	45206646	45206717	SINE|MIR|MIRb	+	chr13	45206354	45267333	GTF2F2|ENST00000494087.5	+	45206354,45252870,45267232	45207505,45252970,45267333	0.750000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	28354205	28354206	28354205	-	High_confidence	42	44	56	1.781316	4.941626	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329449	28354204	ZSCAN31|ENST00000434036.5	-	28329449,28336789,28353861,28354130	28329714,28336943,28353952,28354204	0.732143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	42491626	42491627	42491626	-	High_confidence	6	6	8	0.254474	3.000000	chr15	42491490	42491729	SINE|MIR|MIRb	+	chr15	42412436	42491197	ZNF106|NM_001284307.1	-	42412436,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42466052,42472235,42490979	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42466114,42472321,42491197	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	107872834	107872909	107872908	-	RAMPAGE_only	3	3	13	0.413520	3.392747	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	23404025	23404069	23404025	-	RAMPAGE_only	4	5	13	0.413520	3.418296	chr1	23403928	23404035	LINE|RTE-BovB|MamRTE1	+	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.692308
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	112971326	112971337	112971326	+	RAMPAGE_only	6	6	12	0.381711	3.459432	chr12	112971073	112971451	LTR|ERVL|LTR67B	-	chr12	112938432	112973249	OAS3|NM_006187.3	+	112938432,112941569,112944475,112946742,112947945,112948860,112950692,112961070,112962651,112963312,112964234,112965743,112967417,112967935,112969607,112969961	112938707,112941852,112944651,112946981,112948099,112949205,112950975,112961246,112962902,112963457,112964408,112966029,112967593,112968174,112969755,112973249	0.916667
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	108022959	108022991	108022974	+	High_confidence	30	31	108	3.435395	3.558215	chrX	108022697	108023112	LTR|ERVL-MaLR|MSTB1	+	chrX	108022757	108078882	MSTRG.31428.1	+	108022757,108058037,108066935,108072676,108073249,108076076,108077047	108022834,108058201,108067134,108072832,108073369,108076218,108078882	0.981481
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	79634644	79634648	79634644	+	RAMPAGE_only	5	5	10	0.318092	2.725481	chr6	79634593	79634732	LINE|L2|L2b	-	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	40058805	40058806	40058805	+	RAMPAGE_only	7	7	7	0.222665	2.521641	chr1	40058793	40059037	SINE|MIR|MIRc	+	chr1	40040881	40060130	CAP1|ENST00000446031.1	+	40040881,40059333,40060066	40040965,40059458,40060130	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	209900922	209900923	209900922	+	RAMPAGE_only	13	15	16	0.508947	3.456565	chr1	209900724	209901095	LTR|ERVL|LTR16	+	chr1	209938173	210164286	SYT14|ENST00000537238.5	+	209938173,209952708,209953054,210013632,210021038,210094321,210100011,210155720,210160728	209938277,209952756,209953259,210013797,210021254,210094593,210100461,210155910,210164286	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	38056121	38056149	38056129	-	High_confidence	159	172	794	25.256518	6.027608	chr4	38056047	38056250	LINE|CR1|L3	-	chr4	38054686	38056295	MSTRG.22436.1	-	38054686,38055779	38054989,38056295	0.993703
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	183452144	183452170	183452144	+	High_confidence	2	2	12	0.381711	3.277613	chr3	183452059	183452354	SINE|Alu|AluSz6	-	chr3	183451740	183455335	LINC00888|ENST00000487386.1	+	183451740,183452370,183454014,183455190	183451822,183452485,183454093,183455335	0.583333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	102450339	102450360	102450359	-	High_confidence	5	5	13	0.413520	3.392747	chr11	102450237	102450387	LTR|ERVL-MaLR|MLT1K	+	chr11	102398855	102451231	TMEM123|ENST00000528969.5	-	102398855,102401538,102401915,102448811,102451201	102398891,102401692,102402206,102448868,102451231	0.846154
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	55851353	55851383	55851353	+	High_confidence	4	4	19	0.604375	4.058814	chr5	55851124	55851720	DNA|TcMar-Tigger|Tigger17a	-	chr5	55851378	55909141	IL31RA|NM_001297570.1	+	55851378,55859508,55868790,55872269,55883043,55889969,55896349,55899915,55906105,55907358,55908264	55851633,55859599,55868908,55872451,55883195,55890135,55896429,55900132,55906288,55907460,55909141	0.684211
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	35164177	35164236	35164235	+	High_confidence	22	26	149	4.739573	4.084862	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	4129116	4129148	4129116	+	RAMPAGE_only	6	6	22	0.699803	3.970573	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	3062922	3062983	3062922	-	High_confidence	57	67	306	9.733620	6.276499	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.977124
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	23689257	23689258	23689257	+	High_confidence	8	8	12	0.381711	3.277613	chr16	23689271	23689332	LINE|RTE-BovB|MamRTE1	+	chr16	23688675	23690038	PLK1|ENST00000564794.1	+	23688675,23689237,23689493,23689859	23688745,23689392,23689772,23690038	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	40746994	40747030	40747029	-	High_confidence	17	21	73	2.322073	4.968437	chr9	40746807	40747326	LTR|ERV1|LTR10A	-	chr9	40624352	40747043	MSTRG.29761.3	-	40624352,40640477,40719769	40624714,40642121,40747043	0.917808
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	4143196	4143215	4143199	+	High_confidence	164	168	337	10.719706	5.810069	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.994065
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	111097312	111097338	111097312	-	High_confidence	2	2	8	0.254474	2.521641	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	107580245	107580272	107580264	+	High_confidence	3366	3367	14551	462.855916	7.300063	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.924335
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	98045583	98045605	98045604	+	RAMPAGE_only	6	7	14	0.445329	2.653544	chr9	98045312	98045711	LTR|ERV1|MER57B1	+	chr9	98056676	98083083	NANS|NM_018946.3	+	98056676,98060781,98076917,98078192,98080815,98082845	98056940,98060997,98077017,98078347,98081082,98083083	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr21	25912170	25912171	25912170	-	RAMPAGE_only	9	9	14	0.445329	3.392747	chr21	25912030	25912200	SINE|MIR|MIR	-	chr21	25880549	26140390	APP|NM_001136016.3	-	25880549,25891721,25897572,25905023,25911740,25954589,25955626,25975069,25975953,25982343,26000014,26021839,26050999,26053235,26089942,26111978,26140152	25881771,25891868,25897673,25905077,25911962,25954689,25955755,25975228,25976028,25982477,26000182,26022042,26051193,26053348,26090072,26112146,26140390	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	46854142	46854143	46854142	+	RAMPAGE_only	7	7	8	0.254474	2.807355	chr2	46853947	46854326	LTR|ERVL-MaLR|THE1B	+	chr2	46855687	46858579	LINC01119|ENST00000495449.1	+	46855687,46858079	46855990,46858579	0.750000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	14653390	14653391	14653390	-	High_confidence	64	64	64	2.035790	3.785261	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	39032920	39032938	39032937	-	High_confidence	4	4	10	0.318092	3.321928	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	38993734	39032922	TMEM156|ENST00000344606.6	-	38993734,38998723,39032225,39032641	38993998,38998909,39032443,39032922	0.800000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	131522770	131522790	131522770	-	RAMPAGE_only	4	5	14	0.445329	3.235926	chr7	131522684	131523276	LINE|L1|L1MB8	-	chr7	131500261	131556563	PODXL|ENST00000446198.5	-	131500261,131505867,131506259,131506578,131508950,131510827,131556259	131504508,131506035,131506321,131506726,131509585,131511433,131556563	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	117464063	117464066	117464063	+	RAMPAGE_only	6	6	10	0.318092	2.947703	chr6	117464010	117464173	LINE|L1|L1MD1	-	chr6	117453833	117485042	DCBLD1|ENST00000533950.1	+	117453833,117480345,117480861,117484949	117453897,117480470,117480999,117485042	0.800000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	20658568	20658619	20658597	+	High_confidence	11	11	52	1.654079	4.838563	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.557692
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	17856034	17856035	17856034	-	RAMPAGE_only	11	12	16	0.508947	3.506891	chr6	17855745	17856010	SINE|Alu|AluJo	-	chr6	17759182	17987463	KIF13A|ENST00000378814.9	-	17759182,17764154,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571,17796668,17799265,17799951,17804360,17805474,17808767,17817019,17825767,17826037,17828239,17831100,17833960,17836877,17837471,17849376,17850322,17851954,17855436,17856029,17873376,17898167,17987053,17987408	17760877,17764946,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794704,17796820,17799439,17800113,17804510,17805615,17808930,17817233,17825934,17826124,17828370,17831235,17834071,17837090,17837583,17849489,17850457,17852042,17855617,17856122,17873437,17898180,17987144,17987463	0.937500
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	49867874	49867885	49867884	-	High_confidence	8	8	23	0.731612	3.882045	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49861203	49867886	PNKP|ENST00000322344.7	-	49861203,49861448,49861607,49861771,49862043,49862184,49862370,49862537,49862689,49863688,49863963,49864178,49864323,49865126,49866398,49867053,49867468	49861365,49861510,49861695,49861881,49862105,49862281,49862463,49862608,49862738,49863760,49864071,49864236,49864403,49865426,49866445,49867217,49867886	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	32152898	32152940	32152936	-	RAMPAGE_only	14	16	37	1.176941	3.857116	chr11	32152906	32153008	LINE|L2|L2c	+	chr11	32112048	32254395	THEM7P|ENST00000419556.2	-	32112048,32230119,32254345	32112428,32230361,32254395	0.864865
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	123162622	123162660	123162622	+	RAMPAGE_only	2	3	8	0.254474	2.807355	chr10	123162608	123162659	DNA|hAT-Ac|OldhAT1	-	chr10	123154414	123165365	BUB3|ENST00000368858.9	+	123154414,123154917,123155657,123157728,123160406,123162235,123162611,123165046	123154485,123155112,123155727,123157880,123160565,123162413,123162828,123165365	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	33838219	33838261	33838256	+	RAMPAGE_only	6	6	24	0.763421	4.004886	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.791667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	40025030	40025036	40025035	-	RAMPAGE_only	5	5	14	0.445329	3.180833	chr17	40024727	40025035	SINE|Alu|AluSx1	-	chr17	40022411	40023651	MED24|ENST00000492176.2	-	40022411,40022644,40023130	40022484,40022826,40023651	0.785714
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	227534916	227534933	227534916	+	RAMPAGE_only	7	8	15	0.477138	3.521641	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.933333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	149284778	149284779	149284778	+	High_confidence	7	7	7	0.222665	2.807355	chr3	149283837	149285090	LTR|ERV1|LTR12C	+	chr3	149284781	149333653	AC093001.1|ENST00000489011.1	+	149284781,149333503	149285182,149333653	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	27579244	27579303	27579244	+	RAMPAGE_only	5	5	23	0.731612	4.106603	chr12	27579150	27579292	SINE|MIR|MIR3	+	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.695652
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	20694517	20694518	20694517	+	RAMPAGE_only	20	20	20	0.636184	3.821928	chr9	20694323	20694599	DNA|hAT-Charlie|Charlie15b	-	chr9	20701322	20995948	MSTRG.29553.5	+	20701322,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20701376,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	0.950000
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	7147267	7147288	7147287	+	High_confidence	12	12	32	1.017895	4.681728	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.843750
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	40657129	40657130	40657129	+	RAMPAGE_only	7	8	8	0.254474	2.500000	chr15	40657015	40657149	LINE|L2|L2	+	chr15	40623131	40664339	KNL1|ENST00000526913.5	+	40623131,40628069,40628610,40629272,40640911,40644996,40645655,40646986,40650300,40650543,40651470,40652004,40654908,40657041,40657354,40659338,40662073,40663334	40625640,40628208,40628678,40629371,40641027,40645087,40645772,40647074,40650378,40650583,40651572,40652105,40654977,40657151,40657473,40659461,40662683,40664339	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	57426754	57426755	57426754	-	High_confidence	10	10	10	0.318092	2.921928	chr11	57426722	57426811	SINE|MIR|MIRb	-	chr11	57407405	57426752	SLC43A3|ENST00000529554.5	-	57407405,57409174,57409934,57414614,57414932,57416572,57417747,57420971,57421296,57423981,57425540,57425988,57426587	57407896,57409298,57410121,57414731,57415106,57416670,57417887,57421064,57421373,57424028,57425670,57426352,57426752	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr21	29077448	29077501	29077486	+	High_confidence	15	16	62	1.972171	5.127032	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.548387
mammary_microvascular_endothelial_cell_female_adult_26_years	chr18	35467022	35467169	35467080	-	High_confidence	33	41	172	5.471185	6.615021	chr18	35467057	35467118	DNA|hAT-Charlie|MER5A	-	chr18	35445742	35467081	AC007998.3|ENST00000591141.1	-	35445742,35446874,35466623	35445900,35446955,35467081	0.563953
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	9234192	9234217	9234192	+	RAMPAGE_only	3	5	12	0.381711	3.459432	chr2	9234172	9234396	SINE|MIR|MIRb	+	chr2	9206764	9405683	ASAP2|ENST00000315273.4	+	9206764,9279316,9297299,9318523,9320287,9323120,9327825,9334737,9335092,9344531,9344730,9350807,9356046,9356178,9358755,9368424,9374754,9376907,9378943,9380740,9385244,9388293,9393481,9400022,9400741,9401273,9403252	9207230,9279389,9297445,9318598,9320337,9323250,9327911,9334813,9335179,9344635,9344800,9350895,9356095,9356345,9358889,9368519,9374944,9376993,9379059,9380808,9385358,9388546,9393647,9400072,9400830,9401396,9405683	0.583333
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	115647897	115648001	115648000	+	RAMPAGE_only	12	12	72	2.290264	5.247788	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.986111
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	28354137	28354144	28354137	-	High_confidence	7	7	19	0.604375	3.794653	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329373	28354186	ZSCAN31|ENST00000446222.5	-	28329373,28336789,28353861,28354130	28329778,28336943,28353952,28354186	0.736842
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	30690391	30690445	30690391	+	RAMPAGE_only	15	15	30	0.954277	4.375222	chr14	30684809	30690837	LINE|L1|L1HS	-	chr14	30676125	30705885	SCFD1|ENST00000554486.1	+	30676125,30694772,30700187,30702295,30705822	30676633,30694869,30700258,30702375,30705885	0.733333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	53464822	53464842	53464822	+	RAMPAGE_only	3	3	14	0.445329	3.664498	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.785714
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	49209917	49209932	49209918	-	High_confidence	6	8	18	0.572566	3.219528	chr17	49209802	49209916	LINE|CR1|L3	-	chr17	49206578	49210199	MSTRG.13361.4	-	49206578,49207338,49208844,49209879	49206882,49207444,49208954,49210199	0.944444
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	35432451	35432500	35432475	-	High_confidence	5	5	25	0.795230	4.293661	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	18938394	18938395	18938394	-	High_confidence	8	8	9	0.286283	2.500000	chr19	18938201	18938361	SINE|MIR|MIR3	-	chr19	18929438	18938982	HOMER3|ENST00000594439.5	-	18929438,18931324,18931508,18931975,18932923,18938352,18938727,18938968	18929634,18931411,18931625,18932132,18933045,18938484,18938884,18938982	0.888889
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	169812903	169812904	169812903	-	High_confidence	23	23	31	0.986086	4.244519	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.967742
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	141002213	141002239	141002238	-	High_confidence	2	3	8	0.254474	2.521641	chr8	141002088	141002337	LINE|L2|L2	-	chr8	140879479	141002110	PTK2|ENST00000517453.5	-	140879479,140890542,140925660,141002013	140879637,140890769,140925749,141002110	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	37058793	37058884	37058883	-	RAMPAGE_only	10	10	49	1.558652	4.254176	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.959184
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	21227175	21227193	21227192	-	RAMPAGE_only	4	4	12	0.381711	3.095795	chr1	21227023	21227146	SINE|Alu|AluJr4	-	chr1	21219813	21222081	ECE1|ENST00000531334.1	-	21219813,21221746	21220131,21222081	0.583333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	67791731	67791754	67791731	-	RAMPAGE_only	20	22	66	2.099408	4.590562	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701473	67832133	MSTRG.1262.3	-	67701473,67707593,67777457,67831818	67705576,67707712,67777507,67832133	0.939394
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	87872354	87872369	87872354	-	RAMPAGE_only	5	6	14	0.445329	3.521641	chr14	87872191	87872553	LTR|ERVL-MaLR|THE1B	-	chr14	87736401	87816251	AL359237.1|ENST00000554519.1	-	87736401,87763705,87816131	87736989,87763810,87816251	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	180830976	180831032	180831009	+	High_confidence	5	5	38	1.208750	4.982289	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.894737
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	81065675	81065676	81065675	+	RAMPAGE_only	9	10	10	0.318092	3.321928	chr5	81065333	81065960	LINE|L1|HAL1ME	-	chr5	81070023	81088564	RASGRF2|ENST00000502677.1	+	81070023,81073198,81080120,81080595,81085801,81086834,81087127	81070581,81073452,81080200,81080789,81085911,81086953,81088564	0.800000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	17282800	17282822	17282821	+	RAMPAGE_only	6	6	15	0.477138	3.521641	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.733333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	11225838	11225888	11225885	-	High_confidence	132	142	336	10.687897	7.283894	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.622024
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	27030217	27030247	27030217	+	High_confidence	5	6	16	0.508947	3.189898	chr12	27030124	27030371	SINE|Alu|AluJr	-	chr12	27030259	27030673	MED21|ENST00000621885.1	+	27030259	27030673	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	129439736	129439737	129439736	-	High_confidence	8	8	11	0.349901	2.921928	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129437046	129439937	MBD4|ENST00000505883.1	-	129437046,129437807,129439729	129437308,129437950,129439937	0.545455
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	132134203	132134208	132134205	+	High_confidence	8	19	34	1.081513	4.039507	chr6	132134140	132134291	DNA|hAT-Tip100|MamTip2	+	chr6	132134410	132169374	LINC01013|ENST00000443303.1	+	132134410,132154655,132169000	132134483,132154777,132169374	0.735294
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	200887961	200887981	200887970	-	High_confidence	8	8	19	0.604375	3.892407	chr2	200887775	200888074	SINE|Alu|AluSx1	+	chr2	200871151	200887687	PPIL3|ENST00000415562.5	-	200871151,200876918,200881420,200882341,200885697,200887612	200871521,200877037,200881488,200882382,200885772,200887687	0.789474
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	53585017	53585038	53585017	-	RAMPAGE_only	3	3	9	0.286283	2.750000	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53604835	MSTRG.31095.1	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543885,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602563,53603367,53604588	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575785,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604835	0.888889
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	122852351	122852359	122852351	-	High_confidence	425	431	624	19.848951	5.624032	chr10	122852085	122852506	LINE|L1|L1MCa	+	chr10	122849095	122852518	MSTRG.4286.10	-	122849095,122850423,122852328	122849439,122850520,122852518	0.943910
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	134432378	134432436	134432435	-	High_confidence	32	35	153	4.866810	5.396925	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.947712
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	59202830	59202831	59202830	+	RAMPAGE_only	32	34	38	1.208750	4.308271	chr17	59202829	59203046	SINE|Alu|AluJr	+	chr17	59155498	59206709	PRR11|NM_018304.3	+	59155498,59169747,59185053,59185439,59193491,59194756,59195330,59197543,59197692,59201562	59155805,59169880,59185204,59185562,59193734,59194855,59195443,59197603,59197789,59206709	0.947368
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	33400921	33400924	33400921	+	RAMPAGE_only	12	13	19	0.604375	3.787144	chr5	33400728	33401119	LTR|ERVL-MaLR|THE1D	+	chr5	33440695	33468091	TARS|NM_001258437.1	+	33440695,33441045,33445323,33448540,33453288,33454944,33455586,33456001,33456148,33457256,33458565,33459694,33460901,33461157,33461666,33461905,33462098,33463752,33466870,33467559	33440791,33441143,33445404,33448731,33453412,33455066,33455704,33456066,33456227,33457403,33458664,33459861,33461064,33461295,33461744,33462006,33462203,33463825,33466985,33468091	0.947368
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	77169364	77169388	77169364	-	RAMPAGE_only	2	2	11	0.349901	3.277613	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77088989	77219426	PIGK|ENST00000370812.7	-	77088989,77122274,77154448,77161294,77161593,77163845,77166718,77169259,77206639,77210435,77219309	77092490,77122359,77154621,77161405,77161711,77163942,77166830,77169395,77206731,77210489,77219426	0.909091
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	127762417	127762457	127762430	-	High_confidence	15	16	42	1.335987	5.113650	chr9	127762302	127762854	LINE|L2|L2a	+	chr9	127738316	127762440	SH2D3C|NM_001142531.1	-	127738316,127739681,127740257,127741787,127742848,127744563,127747146,127749210,127751171,127761610,127762391	127738921,127739888,127740369,127741959,127742964,127745099,127747271,127749665,127751300,127761650,127762440	0.952381
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	49687804	49687884	49687844	+	High_confidence	13	14	70	2.226645	4.844806	chr19	49687767	49688014	LINE|L2|L2	-	chr19	49687852	49689029	PRMT1|ENST00000527866.1	+	49687852,49688161	49687952,49689029	0.971429
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	4580863	4580877	4580863	+	RAMPAGE_only	13	13	47	1.495033	4.538111	chr12	4580796	4580870	LINE|RTE-X|L4_C_Mam	+	chr12	4590071	4597173	DYRK4|NR_104115.1	+	4590071,4590329,4591159,4593001,4596148,4596588	4590207,4590554,4591298,4593165,4596445,4597173	0.893617
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	40657067	40657086	40657076	+	RAMPAGE_only	3	4	10	0.318092	2.725481	chr15	40657015	40657149	LINE|L2|L2	+	chr15	40623131	40664339	KNL1|ENST00000526913.5	+	40623131,40628069,40628610,40629272,40640911,40644996,40645655,40646986,40650300,40650543,40651470,40652004,40654908,40657041,40657354,40659338,40662073,40663334	40625640,40628208,40628678,40629371,40641027,40645087,40645772,40647074,40650378,40650583,40651572,40652105,40654977,40657151,40657473,40659461,40662683,40664339	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	18063206	18063218	18063206	-	High_confidence	2	3	6	0.190855	2.584963	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	21001486	21001610	21001609	-	RAMPAGE_only	69	78	136	4.326054	5.766111	chr17	21001557	21001631	DNA|hAT-Charlie|MER58C	+	chr17	20999592	21043039	USP22|ENST00000261497.8	-	20999592,21004201,21004927,21006895,21007869,21011150,21012829,21015751,21017941,21019083,21021112,21028541,21042664	21003073,21004351,21004990,21006987,21007996,21011309,21012935,21015899,21018111,21019185,21021226,21028674,21043039	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	64226142	64226186	64226158	-	High_confidence	62	64	480	15.268424	7.334747	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.983333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	110116244	110116273	110116244	-	High_confidence	2	2	7	0.222665	2.521641	chr2	110116244	110116345	SINE|MIR|MIR3	-	chr2	110085022	110116022	MALL|ENST00000427178.1	-	110085022,110115687	110085757,110116022	0.571429
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	138057428	138057429	138057428	+	High_confidence	14	15	20	0.636184	4.037401	chr4	138057231	138057593	LTR|ERVL-MaLR|THE1B	+	chr4	138057463	138098717	SLC7A11-AS1|ENST00000510066.5	+	138057463,138062807,138090833,138098188	138057508,138062903,138090980,138098717	0.650000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	84870489	84870538	84870537	-	High_confidence	26	29	137	4.357863	6.093866	chr4	84870233	84870887	LINE|L1|L1MCa	+	chr4	84841191	84870501	MSTRG.22736.13	-	84841191,84849901,84860411,84870384	84841263,84850025,84860622,84870501	0.781022
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	200483578	200483582	200483578	-	High_confidence	9	10	19	0.604375	3.536887	chr1	200483479	200483655	DNA|hAT-Charlie|MER5B	+	chr1	200478019	200483604	AL359834.1|ENST00000635660.1	-	200478019,200483101	200478154,200483604	0.947368
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	28506430	28506453	28506430	+	High_confidence	4	4	10	0.318092	2.947703	chr1	28506187	28506484	SINE|Alu|AluSx	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.800000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	20658312	20658343	20658338	+	High_confidence	23	29	91	2.894639	5.314115	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658336	20995948	MSTRG.29553.2	+	20658336,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	0.582418
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	37298760	37298761	37298760	+	RAMPAGE_only	10	10	10	0.318092	3.121928	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	55280199	55280251	55280218	-	High_confidence	14	17	90	2.862830	3.607378	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.955556
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	58526765	58526766	58526765	-	High_confidence	6	6	9	0.286283	2.947703	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	75025235	75025268	75025235	-	RAMPAGE_only	3	3	17	0.540757	3.219528	chr14	75025064	75026121	LINE|L2|L2c	+	chr14	75015486	75023018	MLH3|ENST00000554697.5	-	75015486,75017007,75018828,75022813,75022994	75015862,75017201,75018980,75022892,75023018	0.764706
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	78620056	78620058	78620056	+	High_confidence	37	59	59	1.876744	5.221295	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.966102
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	158863389	158863410	158863409	+	RAMPAGE_only	4	7	15	0.477138	3.640224	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.866667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	40041430	40041487	40041478	+	High_confidence	6	7	22	0.699803	3.880180	chr1	40041503	40041638	SINE|MIR|MIRc	+	chr1	40040779	40066295	CAP1|ENST00000424977.1	+	40040779,40041428,40059336,40060066,40061734,40064226,40064473,40066214	40040801,40041493,40059458,40060170,40061812,40064370,40064559,40066295	0.954545
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	152313903	152313914	152313903	-	RAMPAGE_only	9	9	18	0.572566	3.836592	chr6	152313861	152314306	LINE|L2|L2b	+	chr6	152121779	152311167	SYNE1|ENST00000409694.6	-	152121779,152130719,152132121,152133275,152135103,152136617,152139949,152141202,152143622,152148044,152149476,152151552,152151958,152154891,152155909,152164162,152176393,152180135,152189251,152201823,152206167,152207971,152211493,152213611,152214905,152218256,152219002,152220841,152221425,152224493,152225720,152230546,152231390,152232115,152233780,152234667,152236106,152236816,152239532,152242239,152244536,152249160,152254879,152255590,152256633,152262031,152268055,152269154,152278088,152281806,152283977,152293587,152293959,152300640,152301868,152308488,152309834,152310395,152310687	152122676,152130778,152132214,152133488,152135232,152136818,152140161,152141329,152143765,152148378,152149668,152151690,152152141,152155042,152156097,152164325,152176560,152180294,152189407,152201949,152206362,152208206,152211588,152213759,152215060,152218403,152219185,152221046,152221559,152224664,152225876,152230702,152231567,152232265,152233963,152234800,152236303,152236948,152239706,152242440,152244656,152249262,152255089,152255746,152256765,152262188,152268165,152269286,152278280,152281980,152284172,152293749,152294127,152300781,152302063,152308632,152310017,152310518,152311167	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	15829094	15829095	15829094	+	High_confidence	123	128	136	4.326054	5.892883	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15835695	UCA1|ENST00000645177.1	+	15829094,15831254,15834501,15835553	15829338,15831356,15835280,15835695	0.941176
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	54759973	54759974	54759973	-	High_confidence	46	46	53	1.685888	4.155729	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.924528
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	124898446	124898519	124898518	-	High_confidence	6	6	46	1.463224	4.726144	chr11	124898463	124898593	SINE|MIR|MIRb	+	chr11	124895799	124898494	ROBO4|ENST00000526899.5	-	124895799,124896197,124896512,124896931,124898397	124895912,124896318,124896670,124897261,124898494	0.826087
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	133952656	133952678	133952671	+	High_confidence	4	5	17	0.540757	3.875000	chr6	133952660	133952828	DNA|hAT-Charlie|Charlie2a	+	chr6	133953162	133987500	TBPL1|NM_004865.3	+	133953162,133980081,133982567,133982816,133984375,133984576,133986960	133953425,133980260,133982650,133982880,133984479,133984671,133987500	0.941176
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	26512150	26512158	26512150	-	High_confidence	2	2	6	0.190855	2.584963	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	86938472	86938495	86938474	-	RAMPAGE_only	46	69	151	4.803192	6.156901	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86892213	86922104	AP001528.2|ENST00000528660.1	-	86892213,86896412,86921235	86892372,86896540,86922104	0.880795
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	128082253	128082276	128082264	-	High_confidence	5	5	13	0.413520	2.918296	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127965991	128082881	MSTRG.24320.4	-	127965991,128061143,128082734	127966928,128061244,128082881	0.538462
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	103353930	103353957	103353930	+	High_confidence	5	6	20	0.636184	3.684184	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.950000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	71417304	71417306	71417304	+	RAMPAGE_only	7	13	14	0.445329	3.026987	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.571429
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	99906523	99906566	99906556	-	High_confidence	6	7	34	1.081513	4.452820	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.941176
mammary_microvascular_endothelial_cell_female_adult_26_years	chr18	49591753	49591771	49591753	+	RAMPAGE_only	14	15	48	1.526842	3.997966	chr18	49591725	49591922	SINE|MIR|MIRc	-	chr18	49589358	49592906	LIPG|ENST00000623277.1	+	49589358	49592906	0.979167
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	88887267	88887302	88887267	-	RAMPAGE_only	4	4	16	0.508947	3.375000	chr1	88886926	88887218	SINE|Alu|AluSx1	-	chr1	88853223	88891496	GTF2B|ENST00000448623.5	-	88853223,88857372,88859881,88860139,88863980,88887260,88891482	88853346,88857487,88860011,88860286,88864114,88887367,88891496	0.937500
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	75512945	75512946	75512945	+	High_confidence	6	6	8	0.254474	2.750000	chr5	75512845	75513016	SINE|Alu|AluSx1	+	chr5	75512068	75573837	POLK|ENST00000514296.5	+	75512068,75534827,75547009,75552471,75569339,75573737	75512946,75534964,75547157,75552591,75569492,75573837	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	128187878	128187896	128187889	-	RAMPAGE_only	3	3	14	0.445329	3.238901	chr9	128187633	128188001	LINE|L1|L1M5	+	chr9	128180798	128190467	CIZ1|ENST00000474442.1	-	128180798,128185546,128187862,128190328	128180814,128185776,128187934,128190467	0.642857
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	62598052	62598072	62598052	-	RAMPAGE_only	7	7	18	0.572566	3.572469	chr11	62597909	62598004	DNA|hAT-Tip100|MER91C	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.944444
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	173369507	173369535	173369515	-	High_confidence	7	8	42	1.335987	4.603760	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.666667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	35432226	35432227	35432226	-	High_confidence	7	7	10	0.318092	2.725481	chr17	35431247	35432210	LTR|ERV1|MER51-int	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	30985701	30985702	30985701	-	RAMPAGE_only	9	10	11	0.349901	3.095795	chr10	30985680	30985885	DNA|TcMar-Tigger|Tigger17a	-	chr10	30844633	30984426	ZNF438|ENST00000361310.7	-	30844633,30848530,30876997,30908932,30910359,30941574,30984368	30845573,30850367,30877065,30909015,30910440,30941651,30984426	0.545455
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	123390748	123390774	123390748	+	High_confidence	4	4	18	0.572566	3.947703	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.944444
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	11225985	11226026	11226025	+	High_confidence	62	65	182	5.789277	6.331440	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11225982	11263253	HRH1|NM_001098211.1	+	11225982,11259002	11226059,11263253	0.653846
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	152717584	152717585	152717584	+	RAMPAGE_only	30	31	35	1.113323	4.536286	chr6	152717403	152717757	LTR|ERVL-MaLR|THE1B	+	chr6	152697960	152724501	MYCT1|ENST00000532295.1	+	152697960,152721741,152722762	152698098,152722253,152724501	0.800000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	2867835	2867857	2867835	+	High_confidence	3	3	11	0.349901	3.121928	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.909091
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	146222412	146222433	146222412	-	High_confidence	5	5	12	0.381711	2.913977	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146200008	146222433	PLSCR4|ENST00000481701.5	-	146200008,146201034,146206525,146220814,146222064,146222199	146200039,146201077,146206761,146220925,146222092,146222433	0.833333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	194632752	194632780	194632752	+	High_confidence	24	33	101	3.212731	2.855045	chr3	194632668	194632869	SINE|MIR|MIR	-	chr3	194632922	194645401	AC046143.1|ENST00000447139.1	+	194632922,194644674	194633167,194645401	0.980198
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	71417037	71417126	71417057	+	RAMPAGE_only	28	34	98	3.117303	6.035578	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.938776
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	14337230	14337293	14337292	-	High_confidence	10	10	68	2.163027	5.388790	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.764706
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	90405194	90405548	90405547	+	RAMPAGE_only	21	21	235	7.475166	5.763112	chr14	90405466	90405547	SINE|tRNA-RTE|MamSINE1	+	chr14	90396982	90408261	CALM1|ENST00000356978.8	+	90396982,90400064,90401258,90403861,90404378,90404688	90397233,90400095,90401402,90403968,90404514,90408261	0.995745
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	113188458	113188513	113188458	+	RAMPAGE_only	3	4	26	0.827040	4.469670	chr9	113188470	113188512	LINE|L1|X9_LINE	+	chr9	113221527	113264492	SLC31A1|NM_001859.3	+	113221527,113256113,113257112,113258693,113260271	113221678,113256277,113257185,113258862,113264492	0.846154
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	186602112	186602128	186602121	+	RAMPAGE_only	2	2	10	0.318092	2.947703	chr2	186602116	186602175	LINE|RTE-BovB|MamRTE1	-	chr2	186600204	186677441	ITGAV|ENST00000433736.6	+	186600204,186602020,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186600381,186602151,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186677441	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	43133126	43133146	43133145	+	High_confidence	6	6	13	0.413520	3.084963	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133143	43148788	TMEM62|ENST00000569535.5	+	43133143,43135511,43146492,43148754	43133402,43135649,43146634,43148788	0.615385
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	26779296	26779320	26779319	+	RAMPAGE_only	4	4	8	0.254474	2.750000	chr2	26779277	26779437	SINE|MIR|MIR3	+	chr2	26764538	26781231	MSTRG.16495.7	+	26764538,26774250,26775043,26775463,26776371,26778041	26764998,26774323,26775215,26775676,26776482,26781231	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	27	27	27	0.858849	3.838040	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	85778589	85778595	85778592	+	High_confidence	4	5	10	0.318092	2.921928	chr4	85778413	85778594	SINE|MIR|MIR3	+	chr4	85778697	86002670	ARHGAP24|NM_001042669.1	+	85778697,85923647,85942065,85972035,85974887,85977569,85994582,86000478	85778965,85923770,85942273,85972168,85974961,85977691,85995657,86002670	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	104287705	104287774	104287705	+	High_confidence	6	9	37	1.176941	4.794653	chr12	104287727	104287918	SINE|MIR|MIR	+	chr12	104287367	104348644	TXNRD1|ENST00000524698.5	+	104287367,104288930,104311289,104313244,104315776,104318912,104319469,104321090,104325336,104326346,104327514,104331533,104334236,104339138,104348352	104287431,104289040,104311412,104313317,104315896,104319055,104319585,104321316,104325429,104326423,104327671,104331641,104334332,104339273,104348644	0.918919
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	43013375	43013393	43013392	-	High_confidence	16	18	35	1.113323	4.822001	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	85777682	85777705	85777704	+	RAMPAGE_only	9	10	21	0.667994	4.011365	chr2	85777710	85777843	LINE|L2|L2c	+	chr2	85781033	85788039	ATOH8|ENST00000489682.1	+	85781033,85786884	85781166,85788039	0.952381
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	187995728	187995788	187995775	+	High_confidence	8	8	36	1.145132	4.006437	chr4	187995806	187995869	DNA|hAT-Charlie|MER112	+	chr4	187995770	188005050	ZFP42|NM_174900.4	+	187995770,187999107,187999608,188002712	187995840,187999273,187999685,188005050	0.944444
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	75261330	75261386	75261385	-	RAMPAGE_only	6	6	26	0.827040	4.251629	chr11	75261362	75261565	DNA|hAT-Charlie|Charlie15a	-	chr11	75260128	75262466	AP001972.5|ENST00000624624.1	-	75260128	75262466	0.923077
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	74715652	74715690	74715689	+	High_confidence	5	5	17	0.540757	3.572469	chr5	74715734	74716041	SINE|Alu|AluSx1	+	chr5	74715585	74721288	HEXB|ENST00000513336.5	+	74715585,74718290,74718796,74720427,74720642,74721117	74715690,74718363,74718971,74720518,74720747,74721288	0.941176
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	36754954	36754981	36754980	-	RAMPAGE_only	3	3	11	0.349901	3.459432	chr20	36754971	36755078	LTR|ERVL|LTR33	+	chr20	36751794	36773720	DSN1|ENST00000373740.7	-	36751794,36754762,36755681,36758086,36758557,36762460,36766768,36767968,36770872,36771424,36773661	36752897,36754850,36755829,36758161,36758617,36762548,36766841,36768042,36770977,36771473,36773720	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	26474329	26474348	26474345	+	RAMPAGE_only	10	10	23	0.731612	3.936180	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.739130
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	47702525	47702554	47702525	-	RAMPAGE_only	3	3	17	0.540757	3.577820	chr20	47702362	47702485	SINE|MIR|MIR	-	chr20	47684513	47757331	SULF2|ENST00000474450.5	-	47684513,47702518,47757188	47684581,47702670,47757331	0.529412
mammary_microvascular_endothelial_cell_female_adult_26_years	chr21	36466465	36466467	36466465	-	High_confidence	13	19	26	0.827040	4.700440	chr21	36466285	36466662	LTR|ERVL-MaLR|THE1C	-	chr21	36460620	36466441	CLDN14|NM_012130.3	-	36460620,36466366	36461776,36466441	0.884615
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	2728416	2728419	2728417	-	High_confidence	10	17	22	0.699803	4.095795	chr8	2728201	2728557	LTR|ERV1|LTR12C	+	chr8	2696553	2728417	AC246817.2|ENST00000520842.5	-	2696553,2705214,2728329	2696970,2705286,2728417	0.727273
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	29643377	29643378	29643377	-	RAMPAGE_only	15	17	21	0.667994	3.975418	chr17	29643278	29643403	LTR|ERVL-MaLR|MLT1L	+	chr17	29630799	29761417	SSH2|ENST00000649863.1	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677738,29684684,29695523,29703062,29761417	0.666667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	380623	380634	380623	+	High_confidence	9	9	22	0.699803	3.308695	chr20	380404	380708	SINE|Alu|AluY	+	chr20	380628	397559	TRIB3|NM_021158.4	+	380628,388010,391286,396197	381169,388301,391579,397559	0.909091
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	34650860	34650891	34650890	-	RAMPAGE_only	4	4	17	0.540757	3.734522	chr14	34650761	34650903	LTR|ERVL-MaLR|MLT1J2	+	chr14	34562408	34630183	SNX6|ENST00000362031.8	-	34562408,34567685,34567853,34575755,34581560,34586229,34593044,34597549,34603347,34605595,34608029,34609637,34629906,34630110	34563175,34567771,34568013,34575842,34581600,34586305,34593150,34597645,34603471,34605717,34608140,34609742,34629954,34630183	0.647059
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	154038408	154038409	154038408	-	High_confidence	7	7	9	0.286283	3.000000	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	153991702	154038866	FAM114A2|ENST00000522858.5	-	153991702,153994918,153997802,154002250,154002846,154011240,154026398,154027175,154028148,154029488,154033790,154034277,154034743,154038292	153993110,153994972,153997875,154002390,154002969,154011320,154026522,154027334,154028283,154029580,154033883,154034377,154034967,154038866	0.888889
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	2757801	2757854	2757801	+	High_confidence	6	6	22	0.699803	4.061482	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	231072213	231072255	231072254	+	RAMPAGE_only	20	21	40	1.272369	4.377567	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231066903	231075566	PSMD1|ENST00000444007.1	+	231066903,231070024,231072332,231075510	231067111,231070168,231072415,231075566	0.575000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	153549130	153549134	153549133	-	High_confidence	6	8	13	0.413520	3.392747	chr1	153549066	153549188	SINE|MIR|MIRb	+	chr1	153547512	153549126	S100A3|ENST00000368712.1	-	153547512,153548344,153549027	153547846,153548490,153549126	0.692308
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	179118593	179118594	179118593	-	RAMPAGE_only	5	5	8	0.254474	2.807355	chr1	179118593	179118709	LINE|RTE-BovB|MamRTE1	-	chr1	179107717	179143044	ABL2|ENST00000504405.5	-	179107717,179109207,179110281,179112308,179114877,179117331,179118586,179120189,179121594,179126376,179131310,179142932	179108898,179109441,179110455,179112398,179115030,179117516,179118764,179120274,179121867,179126672,179131481,179143044	0.750000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	11058820	11058830	11058820	-	RAMPAGE_only	3	3	12	0.381711	2.845351	chr1	11058682	11058785	SINE|MIR|MIRc	-	chr1	11054588	11060024	SRM|ENST00000376957.6	-	11054588,11054961,11055780,11056010,11056603,11058799,11059224,11059776	11054885,11055084,11055926,11056094,11056757,11058892,11059345,11060024	0.916667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	8826170	8826175	8826170	-	RAMPAGE_only	8	8	13	0.413520	2.855389	chr1	8825826	8826275	LTR|ERVL-MaLR|MLT1M	-	chr1	8354625	8817643	RERE|ENST00000400908.6	-	8354625,8355418,8356099,8358195,8359763,8360111,8361762,8362682,8364055,8364745,8365811,8422726,8465924,8495062,8497404,8508626,8541213,8556474,8557417,8614560,8624309,8655972,8817159	8355120,8355599,8356246,8358916,8359986,8361490,8361876,8362844,8364255,8364838,8365974,8422807,8466023,8495162,8497529,8508675,8541318,8556571,8557523,8614686,8624380,8656441,8817643	0.923077
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	73072193	73072231	73072193	-	High_confidence	14	18	46	1.463224	4.666047	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.782609
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	132412685	132412700	132412694	+	RAMPAGE_only	4	5	13	0.413520	3.026987	chr5	132412594	132412759	LTR|ERVL-MaLR|MLT1J2	-	chr5	132410988	132476010	C5orf56|ENST00000407797.6	+	132410988,132419822,132449649,132470039,132475666	132411041,132419940,132449689,132471054,132476010	0.769231
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	56102983	56102995	56102994	-	RAMPAGE_only	5	6	11	0.349901	2.921928	chr5	56102968	56103140	DNA|hAT-Charlie|MER5B	+	chr5	56099881	56116951	ANKRD55|ENST00000434982.2	-	56099881,56102493,56111117,56116614	56100304,56102586,56111782,56116951	0.909091
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	57274842	57274843	57274842	+	RAMPAGE_only	6	6	8	0.254474	3.000000	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	46854109	46854110	46854109	+	RAMPAGE_only	6	6	6	0.190855	2.584963	chr2	46853947	46854326	LTR|ERVL-MaLR|THE1B	+	chr2	46855687	46858579	LINC01119|ENST00000495449.1	+	46855687,46858079	46855990,46858579	0.833333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	136643881	136643946	136643901	-	High_confidence	13	13	85	2.703783	5.616637	chr9	136643806	136644020	LINE|L1|HAL1	-	chr9	136635073	136644493	MSTRG.30595.1	-	136635073,136643743	136641401,136644493	0.882353
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	80176123	80176132	80176123	-	RAMPAGE_only	4	4	10	0.318092	2.947703	chr10	80176083	80176485	LINE|L1|L1ME4b	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	0.800000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	99893444	99893490	99893444	-	High_confidence	7	9	29	0.922467	3.788341	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	154928807	154928808	154928807	+	High_confidence	4	4	6	0.190855	2.584963	chr7	154928746	154929139	LTR|ERV1|LTR48	-	chr7	154928527	154949908	PAXIP1-AS2|ENST00000449486.1	+	154928527,154928955,154944026,154946359,154946592,154947692,154947897,154949297	154928767,154929024,154944620,154946493,154946791,154947773,154948090,154949908	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	62376790	62376801	62376790	-	High_confidence	10	10	18	0.572566	3.191612	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	167937045	167937055	167937045	-	High_confidence	3	3	7	0.222665	2.521641	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167918067	167937040	MPC2|ENST00000271373.8	-	167918067,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937040	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	147173173	147173261	147173260	+	High_confidence	8	8	40	1.272369	4.934184	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.825000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	44626418	44626419	44626418	+	High_confidence	4	5	7	0.222665	2.584963	chr19	44626362	44626615	LINE|L2|L2b	-	chr19	44626469	44636774	MSTRG.15814.5	+	44626469,44627419,44635400,44636418	44626621,44627573,44635465,44636774	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr18	9588104	9588131	9588130	-	RAMPAGE_only	6	6	10	0.318092	3.121928	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9577063	9595061	PPP4R1|ENST00000580583.5	-	9577063,9584514,9584720,9588088,9588710,9593767,9595017	9577191,9584580,9584828,9588235,9588853,9593874,9595061	0.600000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	74322231	74322232	74322231	+	RAMPAGE_only	10	10	11	0.349901	3.121928	chr11	74322080	74322285	LINE|L2|L2b	-	chr11	74311361	74324705	P4HA3-AS1|ENST00000502071.2	+	74311361,74311824,74312118,74322233,74322706,74324094,74324340	74311449,74311946,74312219,74322301,74324003,74324210,74324705	0.909091
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	111606264	111606277	111606276	-	High_confidence	7	7	18	0.572566	4.058814	chr6	111606274	111606582	SINE|Alu|AluY	+	chr6	111555377	111606274	TRAF3IP2|NM_147686.3	-	111555377,111562964,111566443,111567623,111572894,111575642,111580196,111591257,111605775	111559551,111563039,111566560,111567692,111572983,111575821,111580389,111592094,111606274	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	92626424	92626454	92626453	-	RAMPAGE_only	2	2	8	0.254474	3.000000	chr7	92626415	92626538	SINE|MIR|MIRb	-	chr7	92614713	92618277	CDK6|ENST00000467166.1	-	92614713,92618071	92615286,92618277	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	24011756	24011757	24011756	+	High_confidence	10	10	10	0.318092	3.321928	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	166850134	166850153	166850134	+	RAMPAGE_only	5	5	12	0.381711	3.584963	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	150568850	150568881	150568850	+	RAMPAGE_only	6	6	16	0.508947	3.589898	chr7	150568656	150569739	LINE|L2|L2b	-	chr7	150567435	150572481	GIMAP4|ENST00000479232.1	+	150567435,150569887,150572128	150567520,150570001,150572481	0.625000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	110496232	110496279	110496257	-	High_confidence	42	42	170	5.407567	5.377482	chr10	110496171	110496447	LINE|L2|L2b	+	chr10	110475103	110496204	AL355512.1|ENST00000607952.1	-	110475103,110496118	110475226,110496204	0.717647
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	61955384	61955407	61955384	-	RAMPAGE_only	4	5	10	0.318092	2.641604	chr17	61954857	61955361	LTR|ERVL-MaLR|MLT1D	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	76123670	76123699	76123698	-	RAMPAGE_only	17	17	48	1.526842	5.013858	chr12	76123600	76123736	LINE|L2|L2c	+	chr12	76036586	76085033	NAP1L1|ENST00000618691.4	-	76036586,76049199,76049755,76050530,76053090,76053204,76053769,76055018,76056032,76059797,76060137,76067370,76068908,76074202,76084566	76048464,76049250,76049785,76050653,76053110,76053350,76053909,76055090,76056161,76059878,76060279,76067473,76068994,76074239,76085033	0.791667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	14337098	14337157	14337123	-	High_confidence	13	13	73	2.322073	5.197956	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.726027
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	40648649	40648658	40648657	-	High_confidence	7	11	22	0.699803	3.521928	chr17	40648546	40648925	LINE|L2|L2b	+	chr17	40625002	40648654	SMARCE1|ENST00000643318.1	-	40625002,40630713,40631591,40632194,40635930,40636394,40637491,40645795,40647772	40628993,40630924,40631693,40632367,40636102,40636526,40637572,40645847,40648654	0.863636
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	13794264	13794275	13794270	-	RAMPAGE_only	6	6	19	0.604375	3.115834	chr6	13794117	13794268	SINE|Alu|FLAM_C	-	chr6	13787133	13801345	MCUR1|ENST00000607303.1	-	13787133,13788645,13791877,13793893,13798832,13800340,13801287	13787355,13788704,13791992,13793947,13798904,13800382,13801345	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	45000460	45000504	45000503	+	High_confidence	6	6	34	1.081513	4.687500	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.941176
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	178784258	178784263	178784258	+	RAMPAGE_only	2	2	7	0.222665	2.807355	chr1	178784168	178784281	SINE|MIR|MIR1_Amn	-	chr1	178725395	178883533	RALGPS2|ENST00000324778.5	+	178725395,178776681,178785556,178808044,178811314,178821611,178833423,178877497,178878901,178883465	178725419,178776821,178785607,178808128,178811404,178821704,178833550,178877635,178878992,178883533	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	30742471	30742496	30742471	-	RAMPAGE_only	3	3	11	0.349901	2.646439	chr1	30742233	30742438	SINE|MIR|MIR3	-	chr1	30733888	30746229	LAPTM5|ENST00000464569.1	-	30733888,30735172,30737603,30738939,30739808,30741639,30742455,30745917	30733917,30735265,30737699,30739062,30739937,30741716,30742549,30746229	0.909091
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	109383492	109383500	109383492	-	High_confidence	2	2	7	0.222665	2.521641	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	58578103	58578104	58578103	+	RAMPAGE_only	6	6	8	0.254474	2.521641	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58579110	58621042	ZFP91|ENST00000316059.6	+	58579110,58584855,58609829,58610297,58610949,58611603,58612277,58612761,58614228,58616715,58617195	58579622,58584884,58610039,58610334,58611054,58611738,58612328,58612840,58614343,58616815,58621042	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	19754043	19754061	19754043	+	RAMPAGE_only	4	5	16	0.508947	3.625000	chr16	19753608	19754055	LTR|ERVL-MaLR|MLT1L	-	chr16	19761129	19856670	IQCK|ENST00000562762.5	+	19761129,19761356,19763847,19764034,19788837,19827025,19856486	19761238,19761420,19763900,19764112,19788922,19827137,19856670	0.750000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	27579333	27579369	27579333	+	RAMPAGE_only	3	3	15	0.477138	3.773557	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.533333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	33141757	33141758	33141757	-	RAMPAGE_only	5	5	8	0.254474	2.807355	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33084583	33161465	CSTF3|ENST00000323959.8	-	33084583,33085712,33085894,33086987,33090531,33092270,33096305,33096834,33098689,33099033,33099607,33102176,33103106,33105566,33105882,33105997,33107902,33108385,33141666,33141884,33161298	33085289,33085773,33085989,33087141,33090727,33092340,33096408,33096978,33098764,33099150,33099717,33102339,33103184,33105693,33105917,33106064,33108000,33108418,33141762,33141986,33161465	0.750000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr13	110179297	110179356	110179297	-	RAMPAGE_only	54	54	233	7.411548	5.903918	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	0.995708
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	39506628	39506629	39506628	+	RAMPAGE_only	7	7	11	0.349901	2.521928	chr3	39506366	39506823	LTR|ERVL|LTR16C	-	chr3	39502214	39524556	MOBP|ENST00000479860.1	+	39502214,39513382,39517722,39524242,39524443	39502275,39513606,39517785,39524326,39524556	0.545455
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	9323727	9323749	9323748	+	High_confidence	7	7	12	0.381711	3.418296	chr19	9323408	9324010	LTR|ERV1|MER51A	+	chr19	9323771	9343845	ZNF559|NM_001202411.1	+	9323771,9324694,9333014,9338493,9339192,9341101,9341616	9324228,9324780,9333113,9338582,9339319,9341184,9343845	0.916667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	139344537	139344548	139344547	+	High_confidence	428	428	909	28.914578	5.853715	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.981298
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	124899860	124899861	124899860	-	RAMPAGE_only	9	11	12	0.381711	3.459432	chr11	124899753	124899871	SINE|MIR|MIRb	+	chr11	124895799	124898494	ROBO4|ENST00000526899.5	-	124895799,124896197,124896512,124896931,124898397	124895912,124896318,124896670,124897261,124898494	0.583333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	48000215	48000235	48000215	-	High_confidence	2	2	7	0.222665	2.807355	chr7	48000133	48000438	SINE|Alu|AluSx	-	chr7	47987147	48000181	SUN3|ENST00000473723.5	-	47987147,47988787,47991009,47994314,47996030,48000127	47987449,47988880,47991045,47994482,47996146,48000181	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	603490	603543	603490	+	High_confidence	9	9	67	2.131218	5.286020	chr7	603435	603558	LINE|L2|L2c	+	chr7	603503	608482	MSTRG.26625.3	+	603503,607864	603616,608482	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	24085656	24085657	24085656	-	High_confidence	8	8	8	0.254474	3.000000	chr2	24085501	24085858	LTR|ERV1|MER31A	+	chr2	24077432	24085215	TP53I3|NM_004881.4	-	24077432,24079443,24080818,24082884,24084188	24077761,24079640,24081031,24083152,24085215	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	45524130	45524140	45524130	+	RAMPAGE_only	40	43	64	2.035790	4.786738	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.921875
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	30429234	30429284	30429260	-	High_confidence	4	4	40	1.272369	4.312815	chr16	30429210	30429354	SINE|MIR|MIR3	+	chr16	30423913	30429289	DCTPP1|ENST00000568434.1	-	30423913,30429056	30424533,30429289	0.975000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	79631256	79631329	79631302	+	High_confidence	435	438	1942	61.773499	6.711429	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.989186
mammary_microvascular_endothelial_cell_female_adult_26_years	chr18	46087012	46087066	46087042	-	High_confidence	12	12	36	1.145132	4.535849	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.861111
mammary_microvascular_endothelial_cell_female_adult_26_years	chr21	14963800	14963831	14963800	-	RAMPAGE_only	2	2	9	0.286283	2.947703	chr21	14963616	14963778	DNA|hAT-Charlie|MER5A	-	chr21	14961234	15064805	NRIP1|ENST00000318948.6	-	14961234,15014343,15043494,15064744	14968526,15014466,15043574,15064805	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	69237169	69237183	69237176	-	RAMPAGE_only	10	12	39	1.240559	4.926428	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.615385
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	80468637	80468684	80468675	+	RAMPAGE_only	2	2	8	0.254474	2.750000	chr10	80468554	80468709	DNA|hAT-Charlie|MER5A1	+	chr10	80459301	80518041	TSPAN14|ENST00000372156.5	+	80459301,80463087,80466440,80468546,80489216,80504727,80507227,80509300,80512143,80514018,80516203,80517904	80459507,80463127,80466538,80468687,80489314,80504778,80507374,80509471,80512269,80514063,80516323,80518041	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	151766780	151766781	151766780	+	High_confidence	301	344	386	12.278358	6.525942	chr3	151766184	151766973	LINE|L1|L1MC3	-	chr3	151766774	151784417	MSTRG.21679.2	+	151766774,151770507,151773429,151775694,151783831	151766854,151770611,151773652,151775764,151784417	0.792746
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	37484534	37484537	37484536	-	RAMPAGE_only	3	5	7	0.222665	2.584963	chr22	37484462	37484588	SINE|MIR|MIRc	+	chr22	37474511	37486379	MFNG|ENST00000438891.5	-	37474511,37476895,37479344,37480196,37485922	37474677,37476981,37479498,37480299,37486379	0.571429
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	53220846	53220858	53220857	-	RAMPAGE_only	3	3	8	0.254474	3.000000	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192928	53223996	MSTRG.31073.5	-	53192928,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53221687,53223984	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217277,53217966,53218398,53220916,53221730,53223996	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	104907629	104907644	104907629	-	RAMPAGE_only	5	7	18	0.572566	3.852169	chr3	104907484	104907638	SINE|Alu|AluYh3	+	chr3	104809072	104910023	MSTRG.21217.5	-	104809072,104817472,104829658,104907211,104909873	104809699,104817613,104829713,104907462,104910023	0.666667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	32403105	32403149	32403105	-	RAMPAGE_only	4	4	25	0.795230	4.262692	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.920000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	200888587	200888629	200888587	-	High_confidence	6	6	35	1.113323	4.068728	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.914286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	122897280	122897305	122897280	-	High_confidence	2	3	7	0.222665	2.521641	chr9	122897211	122897256	DNA|TcMar-Mariner|MADE1	-	chr9	122890170	122897534	RC3H2|ENST00000471874.2	-	122890170,122892908,122897278	122890545,122893026,122897534	0.571429
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	4736349	4736367	4736361	-	High_confidence	23	38	75	2.385691	3.626821	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.973333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	59892716	59892746	59892716	-	High_confidence	18	20	59	1.876744	4.864711	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.949153
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	23403931	23403968	23403931	-	RAMPAGE_only	5	5	16	0.508947	3.625000	chr1	23403928	23404035	LINE|RTE-BovB|MamRTE1	+	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.937500
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	215848877	215848878	215848877	-	RAMPAGE_only	732	733	914	29.073624	6.669360	chr2	215848652	215849119	LTR|ERVL|MER70B	-	chr2	215743819	215843722	LINC00607|ENST00000417922.1	-	215743819,215747303,215750242,215843325,215843623	215743914,215747394,215750417,215843423,215843722	0.701313
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	11	11	11	0.349901	2.913977	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	70590319	70590335	70590328	+	RAMPAGE_only	60	62	180	5.725659	5.229800	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70660682	MSTRG.11850.2	+	70579908,70646547,70654537,70656601,70656962,70659617,70659996	70580049,70646975,70654671,70656679,70657121,70659753,70660682	0.961111
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	42721262	42721280	42721262	-	High_confidence	28	30	69	2.194836	4.570765	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.826087
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	44959310	44959364	44959341	+	RAMPAGE_only	5	5	20	0.636184	4.021928	chr20	44959390	44959947	LINE|L2|L2b	+	chr20	44966473	45079959	STK4|ENST00000372806.7	+	44966473,44972077,44978442,44981828,44987131,44995089,44997168,45000391,45001166,45024972,45075017	44966603,44972158,44978571,44981943,44987296,44995257,44997306,45000520,45001353,45025130,45079959	0.950000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	50172503	50172572	50172571	+	High_confidence	4	4	20	0.636184	4.021928	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.650000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	9407491	9407507	9407506	-	RAMPAGE_only	99	107	207	6.584508	5.967157	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9402425	9412202	MSTRG.6219.2	-	9402425,9406307,9407307,9408855,9412071	9402556,9406398,9407452,9408949,9412202	0.690821
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	17686043	17686061	17686043	+	RAMPAGE_only	2	2	10	0.318092	2.947703	chr17	17685599	17686175	LINE|L2|L2b	+	chr17	17681728	17810689	MSTRG.12606.3	+	17681728,17724027,17792932,17796602,17803755,17809389,17809969	17681793,17724159,17796418,17798513,17803849,17809439,17810689	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	127765174	127765175	127765174	-	RAMPAGE_only	8	8	8	0.254474	3.000000	chr2	127765110	127765160	LINE|CR1|L3	-	chr2	127701021	127811147	WDR33|ENST00000322313.8	-	127701021,127708676,127709489,127709692,127713582,127717154,127719264,127721835,127722590,127722957,127723252,127724332,127724886,127725060,127726650,127763061,127764827,127765173,127768188,127768932,127770777,127811011	127706552,127708892,127709582,127709856,127714021,127717263,127720353,127721988,127722730,127723044,127723347,127724443,127724965,127725215,127726777,127763159,127764979,127765269,127768293,127769001,127771004,127811147	0.625000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	38056238	38056251	38056250	-	High_confidence	2	2	8	0.254474	2.807355	chr4	38056047	38056250	LINE|CR1|L3	-	chr4	38054686	38056295	MSTRG.22436.1	-	38054686,38055779	38054989,38056295	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	76564172	76564241	76564172	+	RAMPAGE_only	12	15	43	1.367796	4.508522	chr17	76564146	76564423	SINE|Alu|AluSx	-	chr17	76557791	76565279	SNHG16|ENST00000590435.5	+	76557791,76558944,76561287,76563118,76563972	76557857,76559043,76561398,76563482,76565279	0.976744
mammary_microvascular_endothelial_cell_female_adult_26_years	chr18	12310089	12310102	12310101	+	RAMPAGE_only	2	3	8	0.254474	2.521641	chr18	12310039	12310108	SINE|MIR|MIR3	+	chr18	12308262	12325353	TUBB6|ENST00000591463.1	+	12308262,12310942,12325066	12308349,12311053,12325353	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	102235397	102235417	102235416	-	High_confidence	5	5	10	0.318092	3.169925	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102226139	102235424	MOK|ENST00000561150.5	-	102226139,102232534,102233687,102235364	102226408,102232671,102233789,102235424	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	209495238	209495318	209495317	+	RAMPAGE_only	11	14	50	1.590461	4.587581	chr2	209495053	209495629	LINE|L1|L1P3	+	chr2	209424057	209730518	MAP2|ENST00000199940.10	+	209424057,209507591,209580035,209625052,209653141,209678571,209680749,209700276,209704449,209705579,209709913,209723594,209725708,209729849,209730181	209424276,209507641,209580100,209625129,209653432,209678685,209680827,209700338,209704620,209705727,209710254,209723687,209725790,209729962,209730518	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	186977492	186977532	186977513	+	RAMPAGE_only	89	98	298	9.479147	5.945999	chr1	186977440	186977516	LINE|L2|L2c	+	chr1	186948812	186988981	MSTRG.2507.3	+	186948812,186950656,186956101,186965408,186977592,186979314,186988376	186949023,186950728,186956344,186965593,186977788,186979472,186988981	0.959732
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	35294432	35294473	35294442	+	RAMPAGE_only	41	45	129	4.103389	5.876659	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	0.937984
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	103181328	103181329	103181328	-	High_confidence	73	74	74	2.353882	5.369629	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103181332	MSTRG.4110.1	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857,103181230	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982,103181332	0.648649
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	194486593	194486632	194486631	-	High_confidence	3	3	9	0.286283	2.947703	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402688	194486659	MSTRG.22041.6	-	194402688,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194486659	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	90251204	90251205	90251204	+	High_confidence	9	12	14	0.445329	3.700440	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251231	90915052	DISC1FP1|ENST00000562245.5	+	90251231,90546753,90602804,90801765,90844879,90852615,90914869	90251317,90546895,90602908,90801862,90844949,90852707,90915052	0.571429
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	46558627	46558628	46558627	+	RAMPAGE_only	4	5	7	0.222665	2.584963	chr3	46558357	46558849	LINE|L1|L1MEf	-	chr3	46557397	46559688	LRRC2-AS1|ENST00000599511.1	+	46557397	46559688	0.571429
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	116390239	116390247	116390239	+	RAMPAGE_only	5	6	12	0.381711	2.913977	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.916667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	70401422	70401505	70401444	+	RAMPAGE_only	14	18	124	3.944343	5.633095	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.959677
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	151166642	151166680	151166642	+	High_confidence	4	5	18	0.572566	3.308271	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	58048554	58048560	58048557	+	RAMPAGE_only	4	4	15	0.477138	3.589898	chr3	58048420	58048731	LINE|L1|L1MC4	-	chr3	58078328	58170777	FLNB|ENST00000493452.5	+	58078328,58078716,58081628,58094835,58096140,58097814,58098710,58102202,58103958,58105079,58106679,58108457,58109178,58109575,58110009,58111790,58112148,58118871,58121240,58123092,58124331,58125580,58126601,58130740,58132807,58134615,58135978,58138281,58142649,58143472,58145920,58146819,58148205,58148648,58149849,58150104,58153374,58154790,58155959,58159553,58163153,58168439,58169589,58170574	58078519,58078814,58081776,58094954,58096218,58097977,58098908,58102340,58104085,58105216,58106873,58108571,58109322,58109699,58110170,58111881,58112318,58118989,58121503,58123690,58124505,58125743,58126762,58130908,58132931,58134772,58136168,58138529,58142752,58143613,58146049,58146993,58148364,58148852,58150002,58150227,58153641,58154928,58156075,58159686,58163330,58168658,58169793,58170777	0.600000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	35492192	35492216	35492192	-	High_confidence	2	3	7	0.222665	2.521641	chr9	35492164	35492257	DNA|hAT|MER53	-	chr9	35491138	35491952	MSTRG.29664.1	-	35491138,35491430,35491804	35491256,35491730,35491952	0.571429
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	3083275	3083298	3083281	+	RAMPAGE_only	2	2	9	0.286283	2.947703	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	64789059	64789082	64789081	+	RAMPAGE_only	7	8	21	0.667994	3.884184	chr5	64789056	64789153	LINE|L2|L2b	+	chr5	64800244	64804907	CWC27|ENST00000506168.1	+	64800244,64801301,64804228	64800327,64801332,64804907	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	150640575	150640613	150640612	+	High_confidence	2	2	7	0.222665	2.584963	chr5	150640417	150640650	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	35307058	35307091	35307069	-	High_confidence	10	10	37	1.176941	4.627987	chr20	35306926	35307046	SINE|MIR|MIR3	-	chr20	35302565	35307082	UQCC1|ENST00000472559.5	-	35302565,35306665	35304069,35307082	0.972973
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	72111411	72111446	72111411	-	High_confidence	4	6	20	0.636184	3.787144	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72107158	72111443	ANAPC15|ENST00000543050.5	-	72107158,72110087,72110543,72111156,72111411	72107605,72110225,72110603,72111286,72111443	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	26699368	26699369	26699368	-	RAMPAGE_only	9	9	14	0.445329	3.546594	chr12	26699335	26699459	SINE|MIR|MIR3	+	chr12	26335336	26833198	ITPR2|NM_002223.3	-	26335336,26340166,26387433,26398875,26400127,26411319,26415302,26419048,26427912,26436220,26439126,26443542,26475295,26476911,26481130,26483697,26486103,26487067,26494152,26495151,26550246,26556232,26561761,26578712,26580026,26595464,26596882,26599144,26599986,26602369,26602616,26621122,26622239,26624298,26628032,26631865,26653975,26655707,26656296,26657706,26658010,26659112,26663684,26665909,26681873,26682573,26686480,26695605,26711172,26715298,26715751,26716143,26722396,26724655,26725649,26790156,26832689	26339483,26340328,26387594,26399041,26400258,26411412,26415498,26419213,26428088,26436346,26439319,26443650,26475418,26477007,26481241,26483898,26486360,26487251,26494340,26495260,26550355,26556375,26561952,26578833,26580155,26595590,26597134,26599345,26600109,26602495,26602706,26621296,26622405,26624356,26628162,26632059,26654126,26655852,26656548,26657892,26658130,26659285,26663846,26666051,26682034,26682673,26686632,26695650,26711268,26715445,26715835,26716242,26722555,26724742,26725765,26790227,26833198	0.928571
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	220811950	220811963	220811962	+	High_confidence	7	9	16	0.508947	3.240224	chr1	220811924	220812105	LINE|L2|L2a	-	chr1	220811972	220814241	MSTRG.2798.8	+	220811972,220813291	220811999,220814241	0.625000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	80369531	80369569	80369531	+	High_confidence	72	73	267	8.493061	6.512620	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.895131
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	99272863	99272928	99272909	+	High_confidence	15	16	86	2.735593	5.365824	chr7	99272913	99272966	LINE|L2|L2b	+	chr7	99273300	99297972	MYH16|NR_002147.2	+	99273300,99277538,99279509,99280875,99283564,99283872,99284844,99285381,99287891,99289286,99291322,99292311,99294017,99296700,99297659,99297891	99273423,99277712,99279737,99280980,99283651,99284018,99284935,99285438,99288137,99289404,99291450,99292508,99294150,99296917,99297796,99297972	0.906977
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	50756666	50756674	50756673	-	RAMPAGE_only	8	8	14	0.445329	3.378783	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	218287266	218287280	218287279	-	High_confidence	17	17	35	1.113323	4.900712	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.914286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	77127872	77127877	77127872	+	High_confidence	1727	1743	3012	95.809362	7.905321	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.697875
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	32997349	32997350	32997349	-	High_confidence	20	20	20	0.636184	4.221928	chr9	32997347	32997748	LINE|L2|L2c	-	chr9	32972762	32997360	APTX|ENST00000479656.5	-	32972762,32974457,32984630,32985970,32987543,32988078,32989758,32997242	32973652,32974561,32984857,32986030,32987842,32988124,32989895,32997360	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	72665552	72665590	72665552	+	High_confidence	17	19	38	1.208750	4.517301	chr14	72665446	72665910	LINE|L1|L1MC4a	+	chr14	72665532	72670877	MSTRG.9002.1	+	72665532,72670217	72665760,72670877	0.973684
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	155637568	155637604	155637568	-	High_confidence	8	9	24	0.763421	4.023137	chr1	155637451	155637661	LTR|ERV1|LTR12F	-	chr1	155627360	155637571	MSTRG.2173.1	-	155627360,155634769,155637393	155627727,155634846,155637571	0.750000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	152100778	152100793	152100792	+	High_confidence	3	3	6	0.190855	2.584963	chr4	152100450	152100876	LTR|ERVL|LTR16	-	chr4	152100817	152104720	LOC100996286|NR_121627.1	+	152100817,152101483,152103626	152101218,152101580,152104720	0.833333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	86938402	86938410	86938402	+	RAMPAGE_only	15	17	30	0.954277	4.351823	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86940785	86951736	PRSS23|ENST00000531521.1	+	86940785,86950355,86951215	86941027,86950499,86951736	0.733333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	44439896	44439906	44439896	-	High_confidence	5	6	14	0.445329	2.777363	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421126	44439917	C3orf86|ENST00000636468.1	-	44421126,44439796	44421813,44439917	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	103703962	103703977	103703976	+	RAMPAGE_only	2	3	6	0.190855	2.584963	chr14	103703818	103704397	LINE|L1|L1MB3	+	chr14	103629176	103714249	KLC1|ENST00000348520.10	+	103629176,103654563,103657545,103662115,103662701,103669510,103670181,103673013,103673331,103675551,103675688,103677414,103679383,103700654,103701200	103629494,103654825,103657776,103662194,103662927,103669598,103670283,103673187,103673431,103675601,103675756,103677523,103679545,103700727,103714249	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	55982757	55982800	55982799	-	High_confidence	10	10	23	0.731612	4.095795	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.956522
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	129489063	129489126	129489125	+	High_confidence	18	21	71	2.258454	5.706288	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513683	MSTRG.30484.6	+	129489106,129493418,129503322,129504891,129513418	129489299,129493595,129503672,129505043,129513683	0.873239
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	32136910	32136933	32136932	+	High_confidence	3	3	8	0.254474	2.750000	chr11	32136526	32137015	LTR|ERVL-MaLR|MLT1K	-	chr11	32136907	32143719	AL078612.2|ENST00000649877.1	+	32136907,32143143	32137242,32143719	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	27716389	27716434	27716433	+	RAMPAGE_only	4	4	21	0.667994	4.037401	chr12	27716483	27716564	LINE|L2|L2	+	chr12	27710834	27756294	MRPS35|ENST00000538315.5	+	27710834,27714779,27716290,27719807,27724046,27737538,27755180	27710955,27714820,27716458,27719868,27724186,27737608,27756294	0.809524
mammary_microvascular_endothelial_cell_female_adult_26_years	chr21	44872591	44872599	44872591	-	High_confidence	17	19	29	0.922467	3.566109	chr21	44872536	44872598	LINE|L2|L2	+	chr21	44855237	44873032	PTTG1IP|ENST00000494690.5	-	44855237,44856192,44861162,44865394,44865570,44872853	44855256,44856364,44861271,44865447,44865650,44873032	0.793103
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	12800915	12801038	12800915	-	High_confidence	3	3	37	1.176941	4.572431	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.972973
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	48994931	48994932	48994931	+	RAMPAGE_only	6	7	7	0.222665	2.807355	chr19	48994647	48994932	SINE|Alu|AluSz	+	chr19	48993909	49009882	RUVBL2|ENST00000593570.5	+	48993909,48999318,49001348,49003278,49004276,49007017,49007301,49009775	48993923,48999373,49001590,49003334,49004418,49007147,49007368,49009882	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	125785334	125785359	125785358	+	RAMPAGE_only	6	7	20	0.636184	3.826875	chr9	125785170	125785740	LTR|ERVL|MLT2B3	+	chr9	125748198	125967377	PBX3|NM_001134778.1	+	125748198,125748549,125915685,125929654,125935471,125960683,125962101,125963011,125965830	125748428,125748623,125915927,125929845,125935607,125960849,125962214,125963101,125967377	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	44626469	44626564	44626557	+	High_confidence	16	22	83	2.640165	4.205002	chr19	44626362	44626615	LINE|L2|L2b	-	chr19	44626469	44636774	MSTRG.15814.5	+	44626469,44627419,44635400,44636418	44626621,44627573,44635465,44636774	0.963855
mammary_microvascular_endothelial_cell_female_adult_26_years	chr21	41152355	41152356	41152355	-	RAMPAGE_only	9	9	10	0.318092	3.169925	chr21	41152183	41152550	LTR|ERVL-MaLR|THE1C	-	chr21	41141492	41148133	LINC00323|ENST00000441268.2	-	41141492,41147961	41143415,41148133	0.600000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	78996016	78996036	78996035	-	RAMPAGE_only	4	4	9	0.286283	2.947703	chr15	78995966	78996151	LINE|L2|L2b	+	chr15	78980656	78998266	RASGRF1|ENST00000560943.5	-	78980656,78985006,78990188,78991690,78995739,78998095	78980699,78985204,78990273,78991794,78995800,78998266	0.666667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	30354670	30354681	30354679	-	High_confidence	3	4	8	0.254474	2.807355	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	41653688	41653689	41653688	+	RAMPAGE_only	4	5	6	0.190855	2.584963	chr22	41653710	41653849	DNA|hAT-Charlie|MER5A	+	chr22	41621982	41664034	XRCC6|ENST00000405506.2	+	41621982,41636112,41636515,41637607,41646895,41650722,41653528,41656902,41658251,41661330,41663621	41622086,41636251,41636770,41637791,41647082,41650891,41653690,41657032,41658352,41661444,41664034	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	240022172	240022280	240022181	-	RAMPAGE_only	33	34	132	4.198817	3.933144	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	9234162	9234163	9234162	+	RAMPAGE_only	6	7	9	0.286283	2.750000	chr2	9234172	9234396	SINE|MIR|MIRb	+	chr2	9206764	9405683	ASAP2|ENST00000315273.4	+	9206764,9279316,9297299,9318523,9320287,9323120,9327825,9334737,9335092,9344531,9344730,9350807,9356046,9356178,9358755,9368424,9374754,9376907,9378943,9380740,9385244,9388293,9393481,9400022,9400741,9401273,9403252	9207230,9279389,9297445,9318598,9320337,9323250,9327911,9334813,9335179,9344635,9344800,9350895,9356095,9356345,9358889,9368519,9374944,9376993,9379059,9380808,9385358,9388546,9393647,9400072,9400830,9401396,9405683	0.555556
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	100006432	100006437	100006432	-	High_confidence	6	6	10	0.318092	3.121928	chr10	100006406	100006506	SINE|MIR|MIRb	-	chr10	99969111	100006426	MSTRG.4036.5	-	99969111,99971979,100006236	99969237,99972134,100006426	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	17769252	17769298	17769279	+	RAMPAGE_only	13	14	57	1.813125	4.935324	chr10	17769262	17769573	LINE|L2|L2a	-	chr10	17752260	17800867	TMEM236|NM_001098844.2	+	17752260,17771308,17776028,17795920	17752552,17771381,17776170,17800867	0.964912
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	77143243	77143247	77143243	+	High_confidence	3	4	7	0.222665	2.521641	chr17	77143228	77143285	SINE|MIR|MIR3	-	chr17	77143596	77194757	SEC14L1|ENST00000591786.5	+	77143596,77190802,77191187,77193420,77194676	77143659,77190952,77191312,77193549,77194757	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	211639681	211639693	211639692	+	High_confidence	3	3	7	0.222665	2.807355	chr1	211639670	211639754	DNA|hAT-Tip100|MamTip3	-	chr1	211639694	211654581	LINC01693|ENST00000412871.1	+	211639694,211654043	211640360,211654581	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	30425620	30425621	30425620	+	High_confidence	7	7	11	0.349901	3.121928	chr22	30425519	30425631	SINE|MIR|MIRb	-	chr22	30425622	30429054	MTFP1|NM_016498.4	+	30425622,30426716,30427170,30428461	30425946,30426844,30427403,30429054	0.727273
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	65887614	65887623	65887622	-	High_confidence	4	4	9	0.286283	2.750000	chr11	65887463	65887575	LINE|L2|L2	-	chr11	65884934	65888436	FIBP|ENST00000532229.1	-	65884934,65885077,65885508,65887599,65887933,65888333	65884998,65885186,65885663,65887726,65888132,65888436	0.666667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	49086520	49086547	49086546	+	High_confidence	26	26	47	1.495033	4.925523	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.702128
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	46350849	46350850	46350849	+	RAMPAGE_only	35	39	51	1.622270	4.542683	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.882353
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	50756939	50756950	50756939	+	High_confidence	3	3	7	0.222665	2.521641	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.571429
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	179740107	179740146	179740145	+	RAMPAGE_only	3	4	11	0.349901	3.277613	chr3	179740114	179740200	SINE|MIR|MIRc	+	chr3	179721563	179761151	USP13|ENST00000497155.1	+	179721563,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179761111	179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179761151	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	150887978	150887979	150887978	+	RAMPAGE_only	5	5	8	0.254474	3.000000	chr6	150888007	150888522	LINE|L1|L1ME3Cz	+	chr6	150866505	150936915	MTHFD1L|ENST00000441122.5	+	150866505,150876089,150877633,150877772,150882761,150885633,150905649,150918576,150922204,150926121,150936803	150866635,150876174,150877684,150877826,150882886,150885734,150905761,150918668,150922302,150926295,150936915	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	184343957	184343968	184343957	-	RAMPAGE_only	2	2	8	0.254474	2.500000	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184341689	184347912	LINC02363|ENST00000511465.1	-	184341689,184347712	184342053,184347912	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	106598802	106598811	106598810	-	High_confidence	7	7	14	0.445329	3.238901	chr7	106598614	106598802	LTR|ERVL-MaLR|MLT1J	-	chr7	106569875	106598808	AC005050.1|ENST00000650160.1	-	106569875,106572947,106591549,106598753	106571144,106573160,106591682,106598808	0.642857
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	193614814	193614815	193614814	+	High_confidence	4	4	7	0.222665	2.521641	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	5680196	5680249	5680240	-	High_confidence	12	12	57	1.813125	5.110577	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.929825
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	157578743	157578744	157578743	+	RAMPAGE_only	6	6	6	0.190855	2.584963	chr6	157578549	157578926	LTR|ERVL-MaLR|THE1D	+	chr6	157579900	157673529	MSTRG.26492.5	+	157579900,157592987,157628348,157632833,157645736,157647258,157653524,157672768	157579936,157593146,157628486,157632882,157645839,157647368,157653627,157673529	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	32571172	32571173	32571172	+	RAMPAGE_only	7	7	7	0.222665	2.807355	chr5	32571161	32571263	LTR|ERVL-MaLR|MLT1J1	-	chr5	32585498	32604079	SUB1|ENST00000265073.8	+	32585498,32588511,32591562,32598960,32601004	32585625,32588584,32591685,32599069,32604079	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	209495100	209495148	209495141	+	RAMPAGE_only	32	32	83	2.640165	5.413333	chr2	209495053	209495629	LINE|L1|L1P3	+	chr2	209424057	209730518	MAP2|ENST00000199940.10	+	209424057,209507591,209580035,209625052,209653141,209678571,209680749,209700276,209704449,209705579,209709913,209723594,209725708,209729849,209730181	209424276,209507641,209580100,209625129,209653432,209678685,209680827,209700338,209704620,209705727,209710254,209723687,209725790,209729962,209730518	0.638554
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	57794056	57794070	57794069	+	RAMPAGE_only	10	12	22	0.699803	3.821928	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.909091
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	144106382	144106384	144106383	+	RAMPAGE_only	4	7	9	0.286283	2.750000	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144105082	144106881	MAF1|ENST00000527058.1	+	144105082,144105639,144105868,144106075,144106342,144106834	144105149,144105766,144105997,144106241,144106674,144106881	0.666667
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	136222393	136222475	136222393	-	RAMPAGE_only	38	41	93	2.958257	4.729524	chrX	136222161	136222377	SINE|MIR|MIR	-	chrX	136216813	136220813	MAP7D3|ENST00000471510.1	-	136216813,136219397,136219592,136220764	136217258,136219495,136219671,136220813	0.946237
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	17282867	17282888	17282867	+	RAMPAGE_only	2	2	6	0.190855	2.584963	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	24887184	24887185	24887184	-	High_confidence	54	54	68	2.163027	5.107301	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24827562	24887172	MSTRG.16474.8	-	24827562,24827901,24830708,24831661,24834484,24834793,24836916,24838444,24839872,24841258,24841555,24842253,24872569,24887092	24827608,24828161,24830825,24831749,24834646,24834936,24837045,24838622,24840031,24841386,24841667,24842384,24872719,24887172	0.985294
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	131510236	131510253	131510236	-	High_confidence	7	10	20	0.636184	4.037401	chr7	131510213	131510511	SINE|Alu|AluSx3	+	chr7	131509068	131510898	PODXL|ENST00000482581.1	-	131509068,131510827	131509585,131510898	0.550000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	50185892	50185903	50185902	+	RAMPAGE_only	3	5	9	0.286283	2.947703	chr3	50185763	50185908	SINE|MIR|MIR1_Amn	-	chr3	50159018	50189073	SEMA3F|ENST00000434342.5	+	50159018,50159574,50173792,50174051,50174230,50176767,50182283,50182643,50182903,50183185,50183419,50184591,50185442,50185665,50185888,50186280,50186612,50187704	50159288,50159734,50173953,50174114,50174350,50176861,50182403,50182783,50183018,50183255,50183564,50184814,50185531,50185707,50186046,50186348,50186746,50189073	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	72665649	72665659	72665658	+	High_confidence	48	55	122	3.880724	4.993000	chr14	72665446	72665910	LINE|L1|L1MC4a	+	chr14	72665532	72670877	MSTRG.9002.1	+	72665532,72670217	72665760,72670877	0.967213
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	114000163	114000172	114000171	-	RAMPAGE_only	3	3	7	0.222665	2.521641	chr6	114000001	114000273	LTR|ERVL-MaLR|THE1B	-	chr6	113956628	114011308	HDAC2|ENST00000522371.5	-	113956628,113958648,113959905,113962366,114011130	113956693,113958766,113960018,113962394,114011308	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	56904257	56904321	56904305	-	High_confidence	3	3	15	0.477138	2.753434	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56895769	56904343	TRIM25|ENST00000570473.5	-	56895769,56899114,56901418,56904254	56895952,56899180,56901578,56904343	0.666667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	154928480	154928504	154928503	+	High_confidence	23	23	52	1.654079	4.985800	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.923077
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	99410112	99410162	99410112	+	High_confidence	12	12	46	1.463224	4.586183	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.978261
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	140042077	140042078	140042077	-	High_confidence	19	19	19	0.604375	4.037401	chr7	140042027	140042159	LINE|L1|L1ME2	+	chr7	140033841	140041728	PARP12|ENST00000470515.1	-	140033841,140034234,140037714,140041643	140034081,140034331,140037856,140041728	0.526316
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	56904400	56904446	56904401	-	High_confidence	6	10	47	1.495033	4.349301	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56895769	56904343	TRIM25|ENST00000570473.5	-	56895769,56899114,56901418,56904254	56895952,56899180,56901578,56904343	0.851064
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	102235451	102235481	102235458	-	High_confidence	16	17	50	1.590461	4.996566	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.940000
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	13303406	13303409	13303406	-	High_confidence	8	9	14	0.445329	3.700440	chrX	13303238	13303604	LTR|ERVL-MaLR|THE1B	-	chrX	13266047	13303392	LINC02154|ENST00000412485.1	-	13266047,13287428,13303319	13267335,13287564,13303392	0.785714
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	3111607	3111620	3111607	+	RAMPAGE_only	5	5	10	0.318092	2.725481	chr4	3111496	3112202	LINE|L1|HAL1	-	chr4	3115328	3121712	HTT|ENST00000506137.1	+	3115328,3116084,3121227	3115445,3116263,3121712	0.600000
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	71300084	71300460	71300459	+	RAMPAGE_only	129	147	856	27.228690	5.918330	chrX	71300434	71300519	SINE|Alu|AluSx	-	chrX	71291994	71301168	NONO|ENST00000490044.5	+	71291994,71294218,71296564,71296850,71297376,71297835,71298468,71298706,71299941	71293041,71294528,71296660,71297047,71297461,71297938,71298508,71298816,71301168	0.998832
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	124171528	124171529	124171528	-	High_confidence	7	7	7	0.222665	2.807355	chr8	124171344	124171724	LTR|ERVL-MaLR|THE1D	-	chr8	124046070	124171522	FER1L6-AS2|NR_103547.1	-	124046070,124047556,124058787,124060167,124171427	124046776,124047693,124058972,124060792,124171522	0.571429
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	9987159	9987163	9987162	+	High_confidence	14	16	27	0.858849	4.032303	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9987214	10003097	EMC3-AS1|ENST00000440568.1	+	9987214,9987814,9988711,10002716	9987264,9987905,9988747,10003097	0.518519
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	41521716	41521763	41521762	-	High_confidence	74	77	480	15.268424	6.802734	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41513756	41521763	MSTRG.13064.6	-	41513756,41514648,41515471,41515884,41516103,41516807,41517082,41518329,41519638,41521684	41514120,41514674,41515692,41516010,41516265,41516964,41517165,41518497,41519872,41521763	0.962500
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	65181215	65181240	65181215	+	High_confidence	4	4	16	0.508947	3.589898	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.937500
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	6866529	6866553	6866552	-	High_confidence	7	7	19	0.604375	4.247928	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.842105
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	52569721	52569722	52569721	-	High_confidence	11	11	11	0.349901	3.277613	chr15	52569688	52569809	LINE|L2|L2	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	47067487	47067513	47067498	-	High_confidence	267	297	1074	34.163099	5.999715	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.918063
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	123061128	123061328	123061212	-	High_confidence	60	61	610	19.403622	6.440980	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.965574
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	15829039	15829040	15829039	+	High_confidence	5	5	8	0.254474	2.521641	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829050	15835417	UCA1|ENST00000644845.1	+	15829050,15831254,15834635,15835217	15829338,15831356,15835114,15835417	0.625000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	75268288	75268291	75268290	-	RAMPAGE_only	7	10	14	0.445329	3.180833	chr6	75268211	75268937	LTR|ERVL|MER21C	+	chr6	75253612	75272900	TMEM30A|ENST00000370050.9	-	75253612,75258779,75259346,75260823,75265230,75267640,75272463	75256295,75258986,75259490,75260911,75265338,75267748,75272900	0.928571
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	185620092	185620126	185620092	-	RAMPAGE_only	7	9	37	1.176941	4.193429	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.810811
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	93465836	93465880	93465848	-	RAMPAGE_only	4	4	18	0.572566	3.969816	chr10	93465494	93465813	SINE|Alu|AluSx	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.833333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	136644000	136644020	136644019	-	High_confidence	5	5	14	0.445329	3.546594	chr9	136643806	136644020	LINE|L1|HAL1	-	chr9	136635073	136644493	MSTRG.30595.1	-	136635073,136643743	136641401,136644493	0.928571
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	66651731	66651766	66651765	+	High_confidence	8	9	31	0.986086	4.365014	chr14	66649356	66652068	DNA|hAT-Charlie|Charlie3	+	chr14	66651782	67181803	MSTRG.8933.10	+	66651782,66681106,66776463,66824473,66879938,66916002,66922665,66924193,66965190,67023632,67058648,67088982,67100855,67110139,67111860,67113017,67122255,67143361,67159414,67165161,67168932,67179577,67180803	66651898,66681185,66776521,66824566,66880033,66916069,66922938,66924292,66965325,67023675,67058786,67089075,67100911,67110259,67111919,67113171,67122377,67143449,67159488,67165226,67169036,67179674,67181803	0.935484
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	50230995	50230996	50230995	+	High_confidence	16	16	16	0.508947	3.750000	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	49657343	49657356	49657355	-	High_confidence	53	61	145	4.612336	6.401042	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49632568	49657376	MSTRG.20272.8	-	49632568,49657112	49633056,49657376	0.531034
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	44662432	44662465	44662444	+	RAMPAGE_only	3	5	18	0.572566	3.852169	chr19	44662259	44662524	SINE|Alu|AluJb	-	chr19	44643913	44663583	PVR|ENST00000187830.2	+	44643913,44647299,44649808,44653899,44657761,44658741,44661291,44661739	44644175,44647570,44650105,44654017,44657910,44658900,44661323,44663583	0.944444
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	78470059	78470060	78470059	-	RAMPAGE_only	9	10	12	0.381711	2.663533	chr11	78469641	78470190	LINE|L2|L2a	-	chr11	78436188	78443759	NARS2|ENST00000529771.1	-	78436188,78443660	78436814,78443759	0.833333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	17225036	17225037	17225036	+	RAMPAGE_only	5	5	8	0.254474	3.000000	chr11	17224821	17225165	LINE|L2|L2a	+	chr11	17208152	17295424	NUCB2|ENST00000528644.5	+	17208152,17282788,17295323	17208426,17282943,17295424	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	33068824	33068865	33068848	-	RAMPAGE_only	3	3	24	0.763421	3.788755	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.916667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	70397734	70397738	70397734	+	High_confidence	3	3	9	0.286283	3.169925	chr11	70397653	70398136	LINE|L2|L2c	+	chr11	70398403	70436584	CTTN|ENST00000346329.7	+	70398403,70405264,70407297,70407517,70409830,70414541,70415662,70417012,70419745,70420399,70422939,70425331,70429050,70431190,70433100,70433646,70435025	70398614,70405361,70407384,70407591,70409960,70414652,70415717,70417123,70419856,70420510,70422995,70425401,70429199,70431280,70433278,70433718,70436584	0.888889
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	129583997	129583998	129583997	-	RAMPAGE_only	5	6	7	0.222665	2.584963	chr6	129583973	129584076	LINE|RTE-BovB|MamRTE1	-	chr6	129576131	129710225	ARHGAP18|ENST00000368149.2	-	129576131,129580069,129583987,129599215,129600641,129605876,129607892,129611532,129616211,129618686,129629352,129634041,129638393,129641815,129710023	129578604,129580131,129584112,129599356,129600848,129605959,129608052,129611610,129616303,129618852,129629522,129634105,129638629,129642018,129710225	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	53811934	53811942	53811941	-	High_confidence	4	4	8	0.254474	2.750000	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	35449689	35449725	35449689	+	RAMPAGE_only	16	16	69	2.194836	5.185200	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.724638
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	99708864	99708883	99708882	+	RAMPAGE_only	6	6	12	0.381711	2.522055	chr15	99708810	99709549	LINE|L2|L2a	-	chr15	99706594	99715962	MEF2A|ENST00000561125.2	+	99706594,99710633,99712389,99715467	99706855,99710760,99712835,99715962	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	49739005	49739042	49739038	+	High_confidence	11	12	44	1.399606	4.879664	chr12	49735987	49739725	LTR|ERV1|Harlequin-int	+	chr12	49738992	49758483	TMBIM6|ENST00000546796.5	+	49738992,49752463,49752972,49755634,49758226,49758382	49739082,49752549,49753081,49755755,49758275,49758483	0.750000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	57267760	57267782	57267781	+	RAMPAGE_only	10	12	18	0.572566	3.947703	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.888889
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	55796687	55796688	55796687	-	High_confidence	286	324	393	12.501022	5.789015	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796688	LINC00520|ENST00000649892.1	-	55781136,55793367,55796602	55782581,55793456,55796688	0.895674
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	46266488	46266516	46266515	-	High_confidence	13	16	39	1.240559	4.599379	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.948718
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	153967486	153967512	153967486	+	High_confidence	13	16	54	1.717698	4.547090	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.759259
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	80407748	80407749	80407748	+	High_confidence	8	8	11	0.349901	3.321928	chr10	80407618	80407906	SINE|Alu|AluJb	-	chr10	80407828	80432997	FAM213A|NM_001243779.1	+	80407828,80420465,80422416,80425865,80427331,80431985	80407956,80420645,80422508,80426006,80427496,80432997	0.727273
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	3795750	3795789	3795788	+	High_confidence	85	90	632	20.103425	5.873538	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.990506
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	97840902	97840946	97840945	+	RAMPAGE_only	18	19	52	1.654079	4.802987	chr5	97840921	97841011	SINE|MIR|MIR3	-	chr5	97881427	97922695	LINC02234|ENST00000513288.1	+	97881427,97922130	97881567,97922695	0.615385
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	2881285	2881286	2881285	-	High_confidence	148	152	152	4.835001	5.883818	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.947368
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	21940680	21940681	21940680	-	High_confidence	11	11	16	0.508947	3.750000	chr22	21940485	21940733	LTR|ERVL-MaLR|MLT1C	+	chr22	21931265	21940657	PPM1F|ENST00000445205.1	-	21931265,21933390,21934023,21939531,21940574	21931291,21933579,21934226,21939680,21940657	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	156252925	156252931	156252925	-	RAMPAGE_only	5	5	9	0.286283	2.947703	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156250032	156251380	SMG5|ENST00000476954.1	-	156250032,156250857	156250670,156251380	0.888889
mammary_microvascular_endothelial_cell_female_adult_26_years	chr21	32580162	32580184	32580173	-	RAMPAGE_only	17	20	59	1.876744	3.360702	chr21	32580094	32580404	SINE|Alu|AluY	-	chr21	32576658	32582434	TCP10L|ENST00000491828.5	-	32576658,32577425,32578693,32582199	32576923,32577676,32578831,32582434	0.983051
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	145782884	145782908	145782886	-	High_confidence	29	78	159	5.057665	5.938683	chr4	145782725	145783063	LINE|L2|L2a	+	chr4	145761281	145782882	MSTRG.23113.6	-	145761281,145763110,145764978,145765546,145774505,145775788,145779373,145782641	145761598,145763122,145765165,145765738,145774672,145775960,145779511,145782882	0.880503
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	3111665	3111696	3111665	+	RAMPAGE_only	4	4	24	0.763421	4.022055	chr4	3111496	3112202	LINE|L1|HAL1	-	chr4	3115328	3243960	MSTRG.22232.7	+	3115328,3116084,3121227,3122888,3125548,3127263,3129923,3130304,3131285,3131637,3132561,3132813,3134400,3135903,3136225,3140509,3142765,3145151,3146796,3148004,3154292,3157071,3160281,3172319,3172907,3174720,3174945,3177331,3178297,3180514,3182353,3186596,3187650,3188950,3199731,3204006,3206495,3206806,3207280,3208772,3209826,3211928,3212563,3213957,3215109,3217764,3220181,3222386,3223405,3223991,3225660,3228614,3228879,3229886,3233162,3235283,3235564,3236148,3238446,3238817,3239845,3241865	3115445,3116263,3121432,3122936,3125629,3127604,3130047,3130423,3131397,3131775,3132720,3132911,3134540,3135967,3136326,3140656,3142886,3145228,3146948,3148207,3154419,3157199,3160392,3172397,3173131,3174799,3175107,3177387,3178446,3180651,3182470,3186719,3187886,3189093,3199939,3204148,3206675,3206983,3207357,3208911,3209949,3212142,3212709,3214135,3215211,3217952,3220308,3222487,3223560,3224131,3225743,3228745,3229009,3230042,3233353,3235398,3235778,3236254,3238609,3238978,3241773,3243960	0.958333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	177234004	177234011	177234004	-	RAMPAGE_only	4	4	9	0.286283	2.500000	chr2	177233751	177233962	SINE|MIR|MIRc	-	chr2	177230307	177263572	NFE2L2|ENST00000446151.6	-	177230307,177232391,177233249,177234004,177263402	177232008,177232562,177233339,177234271,177263572	0.666667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	155310588	155310615	155310614	-	RAMPAGE_only	5	5	18	0.572566	3.734522	chr6	155310356	155310604	LINE|CR1|L3	-	chr6	155256129	155314483	TFB1M|NM_016020.3	-	155256129,155260272,155285157,155296952,155298476,155311187,155314295	155258082,155260400,155285277,155297104,155298585,155311339,155314483	0.944444
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	112506799	112506824	112506823	+	RAMPAGE_only	3	3	8	0.254474	3.000000	chr12	112506599	112506946	LTR|ERVL-MaLR|MLT1H	-	chr12	112418913	112509913	PTPN11|ENST00000351677.6	+	112418913,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486474,112488442,112489023,112502143,112504694,112505824	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504796,112509913	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	44719456	44719493	44719456	-	High_confidence	3	3	13	0.413520	3.084963	chr19	44719365	44719654	LINE|L2|L2a	+	chr19	44715563	44718685	AC243964.2|ENST00000591312.1	-	44715563,44718453	44716083,44718685	0.923077
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	36824395	36824435	36824396	-	High_confidence	4	6	16	0.508947	3.506891	chr6	36824083	36824405	LTR|ERVL|LTR16C	+	chr6	36775012	36824423	MSTRG.25538.8	-	36775012,36778853,36792032,36792395,36794589,36798164,36798454,36799966,36822113,36823057,36824357	36775065,36778957,36792096,36792446,36794649,36798241,36798494,36800070,36822160,36823098,36824423	0.625000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	1505112	1505131	1505112	+	RAMPAGE_only	4	4	10	0.318092	2.725481	chr1	1504965	1505957	LTR|ERVK|LTR13	-	chr1	1503249	1509452	AL645728.2|ENST00000641974.1	+	1503249,1509204	1503661,1509452	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	38201079	38201122	38201110	+	High_confidence	5	5	13	0.413520	3.392747	chr22	38200998	38201741	LINE|L2|L2a	-	chr22	38200766	38214750	MSTRG.20067.1	+	38200766,38205613,38213822,38214419	38202212,38205764,38213889,38214750	0.923077
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	144533105	144533113	144533105	+	RAMPAGE_only	7	7	23	0.731612	4.262692	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144344140	144828855	MSTRG.26370.8	+	144344140,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789	144344304,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	80485592	80485593	80485592	+	High_confidence	11	11	17	0.540757	3.734522	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.647059
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	19289874	19289875	19289874	-	RAMPAGE_only	8	9	10	0.318092	3.321928	chr14	19289707	19290351	DNA|TcMar-Tigger|MER44C	+	chr14	19244903	19269380	AL589743.7|ENST00000649331.1	-	19244903,19245664,19263182,19269148	19244980,19245863,19263321,19269380	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	33705650	33705933	33705677	-	RAMPAGE_only	12	15	219	6.966219	5.929603	chr11	33705475	33705797	LTR|ERVL|MLT2B3	+	chr11	33703009	33722727	CD59|NM_001127225.1	-	33703009,33717369,33722378,33722570	33710343,33717471,33722463,33722727	0.995434
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	209495465	209495516	209495505	+	RAMPAGE_only	57	57	301	9.574574	6.043853	chr2	209495053	209495629	LINE|L1|L1P3	+	chr2	209424057	209730518	MAP2|ENST00000199940.10	+	209424057,209507591,209580035,209625052,209653141,209678571,209680749,209700276,209704449,209705579,209709913,209723594,209725708,209729849,209730181	209424276,209507641,209580100,209625129,209653432,209678685,209680827,209700338,209704620,209705727,209710254,209723687,209725790,209729962,209730518	0.943522
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	11111726	11111792	11111726	-	High_confidence	412	431	607	19.308195	4.448355	chr6	11108229	11111700	LTR|ERV1|MER50-int	-	chr6	11102488	11111732	ERVFRD-1|ENST00000472091.1	-	11102488,11111676	11105630,11111732	0.973641
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	84139533	84139569	84139565	+	RAMPAGE_only	19	19	78	2.481119	4.592388	chr6	84139529	84140525	LTR|ERV1|MER34-int	+	chr6	84138532	84146199	MSTRG.25963.1	+	84138532,84139469,84144561,84145939	84138550,84139622,84144630,84146199	0.858974
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	131510303	131510324	131510303	-	High_confidence	14	14	44	1.399606	4.462288	chr7	131510213	131510511	SINE|Alu|AluSx3	+	chr7	131509068	131510898	PODXL|ENST00000482581.1	-	131509068,131510827	131509585,131510898	0.772727
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	9986898	9986916	9986898	+	High_confidence	27	32	121	3.848915	6.101559	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.628099
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	53464769	53464787	53464784	+	RAMPAGE_only	2	2	8	0.254474	2.750000	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.750000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	172958875	172958925	172958918	+	High_confidence	140	158	538	17.113359	5.896944	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.957249
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	64999443	64999444	64999443	-	RAMPAGE_only	8	8	11	0.349901	3.121928	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64990808	65006653	ERV3-1|ENST00000394323.2	-	64990808,65006540	64993414,65006653	0.727273
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	39064921	39064933	39064932	-	RAMPAGE_only	3	3	7	0.222665	2.584963	chr14	39064766	39064897	SINE|Alu|FLAM_C	-	chr14	39031918	39088723	SEC23A|ENST00000537403.5	-	39031918,39039030,39040731,39042785,39045162,39048651,39055142,39061764,39063323,39064912,39067172,39074414,39075934,39085761,39086928,39087523	39033328,39039096,39040887,39042872,39045324,39048729,39055296,39061871,39063413,39064993,39067296,39074530,39076093,39085906,39087008,39088723	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	21851154	21851208	21851174	+	High_confidence	24	24	204	6.489080	5.276480	chr7	21851065	21851438	LTR|ERVL-MaLR|THE1C	+	chr7	21851161	21901832	MSTRG.26795.10	+	21851161,21852466,21854314,21861852,21864534,21866469,21867858,21868863,21873273,21880701,21884290,21892424,21894622,21894883,21899335,21899979,21901006	21851320,21852631,21854455,21862023,21864657,21866663,21868007,21868991,21873501,21880893,21884410,21892667,21894805,21894999,21899448,21900120,21901832	0.970588
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	40807864	40807865	40807864	+	High_confidence	7	7	10	0.318092	2.641604	chr15	40807894	40808104	SINE|MIR|MIRc	+	chr15	40807767	40814521	ZFYVE19|ENST00000561768.5	+	40807767,40809118,40809407,40809851,40810070,40810648,40812698,40813337,40813712,40813942,40814147	40807821,40809240,40809458,40809970,40810216,40810757,40812902,40813417,40813811,40814070,40814521	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	33021431	33021456	33021455	-	RAMPAGE_only	5	7	12	0.381711	2.845351	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.916667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	108923675	108923713	108923686	+	RAMPAGE_only	5	5	26	0.827040	3.863465	chr11	108923524	108923886	LINE|L2|L2c	-	chr11	108929518	108940925	DDX10|ENST00000534221.1	+	108929518,108940245	108929708,108940925	0.961538
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	244349259	244349279	244349259	+	High_confidence	2	3	6	0.190855	2.584963	chr1	244349072	244349467	LTR|ERVL|LTR16	-	chr1	244349238	244350274	MSTRG.2983.1	+	244349238,244349737	244349363,244350274	0.833333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	75275180	75275203	75275202	-	RAMPAGE_only	2	2	9	0.286283	2.750000	chr6	75275027	75275754	LINE|L2|L2a	+	chr6	75253612	75272900	TMEM30A|ENST00000370050.9	-	75253612,75258779,75259346,75260823,75265230,75267640,75272463	75256295,75258986,75259490,75260911,75265338,75267748,75272900	0.888889
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	11963819	11963857	11963839	-	RAMPAGE_only	8	8	34	1.081513	4.392583	chr11	11963694	11963925	SINE|MIR|MIRc	+	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.911765
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	45424297	45424308	45424297	-	High_confidence	2	2	7	0.222665	2.584963	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45407332	45424365	ERCC1|ENST00000300853.7	-	45407332,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423780	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424365	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr13	45206668	45206672	45206668	+	High_confidence	2	2	7	0.222665	2.584963	chr13	45206646	45206717	SINE|MIR|MIRb	+	chr13	45206354	45267333	GTF2F2|ENST00000494087.5	+	45206354,45252870,45267232	45207505,45252970,45267333	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	22691528	22691544	22691528	+	RAMPAGE_only	3	3	8	0.254474	3.000000	chr14	22691310	22691607	LINE|L2|L2c	-	chr14	22702142	22703065	OR6E1P|ENST00000414424.1	+	22702142	22703065	0.750000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	643627	643648	643635	-	High_confidence	35	36	128	4.071580	4.928182	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.976562
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	1241361	1241368	1241361	-	RAMPAGE_only	5	6	10	0.318092	2.725481	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1248740	CTBP1|ENST00000513420.1	-	1225437,1228198,1238182,1241324,1248660	1225566,1228343,1238337,1241519,1248740	0.700000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	100082573	100082582	100082576	-	High_confidence	10	10	24	0.763421	4.136842	chr7	100082301	100082600	SINE|Alu|AluSx1	+	chr7	100069970	100082548	ZNF3|NM_001278287.1	-	100069970,100075134,100075541,100077302,100079535,100082300	100072212,100075261,100075630,100077433,100079572,100082548	0.666667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	33395158	33395191	33395177	-	High_confidence	12	15	49	1.558652	4.546417	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	0.938776
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	209651135	209651245	209651135	-	High_confidence	27	29	105	3.339968	5.269977	chr1	209651125	209651277	SINE|MIR|MIR3	+	chr1	209614869	209651334	LAMB3|NM_001017402.1	-	209614869,209616470,209617409,209617906,209618451,209622535,209622981,209623504,209623839,209625647,209626866,209627382,209628034,209629736,209630614,209632582,209633069,209634446,209637907,209638533,209649963,209650916	209615407,209616624,209617586,209618048,209618659,209622680,209623179,209623725,209624000,209626026,209626978,209627579,209628190,209629925,209630735,209632776,209633133,209634638,209637981,209638648,209650118,209651334	0.952381
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	41900563	41900627	41900626	-	RAMPAGE_only	62	65	126	4.007961	5.745292	chr15	41900451	41900632	SINE|MIR|MIR3	-	chr15	41895938	41972552	MSTRG.9793.4	-	41895938,41898111,41909698,41919209,41943066,41953763,41972258	41898063,41901181,41909863,41919622,41943164,41953940,41972552	0.976190
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	72355112	72355146	72355145	-	High_confidence	15	15	50	1.590461	4.565533	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.980000
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	108020822	108020860	108020859	+	RAMPAGE_only	7	7	23	0.731612	3.222192	chrX	108020161	108021394	LINE|L1|L1M3f	-	chrX	108022757	108078882	MSTRG.31428.1	+	108022757,108058037,108066935,108072676,108073249,108076076,108077047	108022834,108058201,108067134,108072832,108073369,108076218,108078882	0.956522
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	1655443	1655474	1655473	-	RAMPAGE_only	4	6	20	0.636184	3.984184	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635586	1658972	MSTRG.143.2	-	1635586,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652468,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1658972	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	93431493	93431497	93431493	-	RAMPAGE_only	2	4	8	0.254474	3.000000	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	36513581	36513736	36513735	+	High_confidence	68	72	312	9.924476	6.366057	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.708333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	45450757	45450766	45450765	-	High_confidence	10	10	19	0.604375	3.947703	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.578947
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	143281636	143281687	143281686	-	High_confidence	22	22	99	3.149112	4.804217	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.616162
mammary_microvascular_endothelial_cell_female_adult_26_years	chr13	49495600	49495624	49495616	+	High_confidence	7	7	31	0.986086	3.939572	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495609	49528992	PHF11|NM_001040443.2	+	49495609,49506634,49513058,49518017,49520893,49522042,49523174,49524084,49526386,49528510	49496095,49506756,49513166,49518151,49520940,49522107,49523241,49524216,49526458,49528992	0.967742
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	47779747	47779784	47779783	+	High_confidence	5	5	15	0.477138	2.973557	chr19	47779522	47779824	SINE|Alu|AluJo	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.666667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	10044614	10044635	10044634	-	High_confidence	3	4	8	0.254474	2.500000	chr11	10044582	10044610	LTR|ERVL|LTR66	-	chr11	9993011	10044606	SBF2|ENST00000527019.5	-	9993011,9993920,10000913,10002556,10028451,10029764,10031047,10042843,10044518	9993103,9993998,10001022,10002689,10028557,10029875,10031170,10042981,10044606	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	21002695	21002697	21002695	-	High_confidence	43	62	73	2.322073	5.199449	chr10	21002503	21002885	LTR|ERVL-MaLR|MSTA	-	chr10	20780822	21002684	MSTRG.3251.2	-	20780822,20787201,20812768,20961671,21002633	20785923,20787308,20812940,20961779,21002684	0.945205
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	222843163	222843164	222843163	+	RAMPAGE_only	6	6	9	0.286283	2.641604	chr2	222843050	222843319	LTR|ERVL-MaLR|MLT1K	-	chr2	222860933	222944639	ACSL3|ENST00000357430.7	+	222860933,222887829,222900673,222908732,222916318,222918045,222919063,222921279,222922707,222923077,222924455,222927016,222928861,222930620,222933165,222934529,222941496	222861258,222887888,222900780,222909150,222916496,222918155,222919202,222921430,222922831,222923149,222924595,222927189,222928936,222930812,222933280,222934687,222944639	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	118835947	118835954	118835953	-	High_confidence	8	8	13	0.413520	3.251629	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.923077
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	100953098	100953099	100953098	+	RAMPAGE_only	7	7	9	0.286283	2.750000	chr1	100952929	100953293	LTR|ERVL-MaLR|MSTA	+	chr1	100896077	100981755	SLC30A7|NM_133496.4	+	100896077,100896569,100906851,100911062,100912111,100913662,100918076,100921705,100961827,100965768,100974809	100896342,100896671,100906965,100911150,100912238,100913806,100918127,100921841,100961918,100965918,100981755	0.888889
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	43018745	43018772	43018771	-	High_confidence	19	19	30	0.954277	3.973447	chr5	43018573	43018883	SINE|Alu|AluY	+	chr5	43014728	43018811	LOC648987|NR_034086.1	-	43014728,43017073	43015150,43018811	0.966667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	227534980	227535010	227534980	+	RAMPAGE_only	1	1	9	0.286283	2.750000	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.888889
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	32927967	32927984	32927967	+	RAMPAGE_only	81	81	219	6.966219	6.115869	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.917808
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	51403428	51403433	51403428	-	RAMPAGE_only	8	8	17	0.540757	2.905639	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.941176
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	51526030	51526044	51526030	-	RAMPAGE_only	11	13	24	0.763421	3.403107	chr20	51525529	51526222	LINE|L2|L2b	+	chr20	51386956	51542719	NFATC2|NM_012340.4	-	51386956,51398642,51432066,51435187,51435705,51454547,51473979,51475457,51516783,51523080,51542369	51391451,51398730,51432756,51435314,51435761,51454688,51474152,51475660,51516955,51524110,51542719	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	16981114	16981151	16981146	-	High_confidence	6	11	30	0.954277	4.026678	chr1	16981145	16981282	SINE|Alu|AluJr	-	chr1	16974501	16980835	MFAP2|ENST00000375535.3	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16980586	16975023,16975342,16975730,16976545,16976794,16976923,16977198,16978314,16980835	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	98891239	98891330	98891328	-	High_confidence	11	17	43	1.367796	4.675924	chr4	98891322	98891802	LINE|L1|L1MB2	+	chr4	98881009	98890898	EIF4E|ENST00000505194.5	-	98881009,98884921,98887078,98887888,98890786	98881142,98885061,98887192,98887952,98890898	0.953488
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	19710880	19710909	19710880	-	RAMPAGE_only	7	8	43	1.367796	4.908482	chr16	19710844	19710935	SINE|Alu|AluYc	+	chr16	19706355	19712091	KNOP1|ENST00000568230.5	-	19706355,19710508,19711371,19711793	19707221,19710586,19711440,19712091	0.767442
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	150991298	150991300	150991298	+	High_confidence	5	10	10	0.318092	2.921928	chr7	150991259	150991350	LTR|ERVL|ERV3-16A3_LTR	-	chr7	150991103	151014474	NOS3|ENST00000461406.5	+	150991103,150995202,150998356,150998538,150998945,150999189,151000497,151001230,151001543,151001820,151002199,151006426,151006888,151007101,151008929,151009188,151009397,151010114,151010596,151010898,151012350,151013230,151013723,151014007	150991300,150995314,150998448,150998680,150999085,150999364,151000599,151001425,151001617,151001965,151002304,151006494,151007005,151007276,151009062,151009267,151009585,151010287,151010807,151010986,151012472,151013379,151013918,151014474	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	48199418	48199437	48199424	-	RAMPAGE_only	12	12	34	1.081513	4.140320	chr17	48199174	48199607	LINE|L2|L2c	+	chr17	48180091	48185179	SKAP1|ENST00000579336.1	-	48180091,48182393,48184722	48180248,48182457,48185179	0.823529
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	96781075	96781085	96781084	-	High_confidence	4	4	11	0.349901	2.663533	chr5	96780967	96781034	SINE|MIR|MIR	-	chr5	96775916	96781181	ERAP1|ENST00000512852.1	-	96775916,96776403,96780422,96781057	96776194,96776551,96780504,96781181	0.727273
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	36643053	36643065	36643053	+	RAMPAGE_only	6	8	12	0.381711	3.095795	chr9	36643100	36643405	SINE|Alu|AluSq	+	chr9	36572929	36677417	MELK|ENST00000626154.2	+	36572929,36589535,36594627,36597221,36599393,36607578,36630298,36633101,36642996,36651745,36657240,36665349,36669309,36670997,36674833,36677159	36573007,36589652,36594771,36597290,36599486,36607673,36630367,36633200,36643083,36651877,36657363,36665581,36669406,36671166,36674937,36677417	0.916667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	31696181	31696188	31696187	-	RAMPAGE_only	16	16	28	0.890658	3.732308	chr20	31696079	31696232	LINE|L2|L2a	+	chr20	31664451	31722330	BCL2L1|NR_134257.1	-	31664451,31666990,31721654	31666086,31667147,31722330	0.892857
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	8867819	8867850	8867819	-	High_confidence	3	3	8	0.254474	2.750000	chr16	8867793	8868007	LINE|L2|L2a	-	chr16	8855230	8867887	CARHSP1|ENST00000567908.5	-	8855230,8858349,8859170,8867706	8855326,8858472,8859335,8867887	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr18	42027530	42027539	42027538	+	RAMPAGE_only	6	6	12	0.381711	3.027169	chr18	42027565	42027649	DNA|hAT-Charlie|MER58B	+	chr18	42025781	42037817	PIK3C3|ENST00000590013.2	+	42025781,42027442,42029324,42033825,42037691	42025939,42027548,42029441,42033957,42037817	0.916667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	36420729	36420741	36420729	+	High_confidence	8	9	16	0.508947	3.875000	chr7	36420775	36420884	LINE|L2|L2b	+	chr7	36420223	36426034	ANLN|ENST00000446635.5	+	36420223,36420611,36421856,36422632,36423816,36424544,36424685,36425701,36426014	36420314,36420744,36421992,36422809,36423943,36424593,36424742,36425740,36426034	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	17197828	17197857	17197856	+	High_confidence	5	6	13	0.413520	3.180833	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	45150496	45150729	45150547	-	RAMPAGE_only	23	24	141	4.485100	5.092109	chrX	45150286	45150530	DNA|hAT-Tip100|MER115	-	chrX	45149899	45191933	CXorf36|ENST00000477281.1	-	45149899,45153909,45191846	45151992,45154081,45191933	0.936170
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	145480761	145480772	145480761	+	High_confidence	9	9	27	0.858849	3.763966	chr4	145480700	145480774	LINE|L2|L2a	-	chr4	145481193	145514932	SMAD1|ENST00000514778.1	+	145481193,145514437	145481314,145514932	0.777778
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	85778522	85778568	85778531	+	High_confidence	13	13	54	1.717698	4.099330	chr4	85778413	85778594	SINE|MIR|MIR3	+	chr4	85778697	86002670	ARHGAP24|NM_001042669.1	+	85778697,85923647,85942065,85972035,85974887,85977569,85994582,86000478	85778965,85923770,85942273,85972168,85974961,85977691,85995657,86002670	0.981481
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	93431409	93431449	93431448	-	RAMPAGE_only	27	28	45	1.431415	4.914637	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.955556
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	310057	310111	310067	+	High_confidence	4	4	25	0.795230	4.163856	chr11	309444	310164	LTR|ERV1|LTR30	-	chr11	310124	315272	MSTRG.4388.8	+	310124,313996,314921	310171,314356,315272	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	143039266	143039285	143039266	+	High_confidence	8	8	20	0.636184	3.884184	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	158172987	158173025	158173024	-	High_confidence	43	44	94	2.990066	6.109118	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.893617
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	181954491	181954519	181954491	+	High_confidence	4	4	21	0.667994	3.975418	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.952381
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	17692207	17692264	17692225	-	High_confidence	26	26	107	3.403586	6.272679	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.813084
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	128185554	128185578	128185577	-	RAMPAGE_only	5	5	10	0.318092	2.947703	chr9	128185400	128185541	SINE|MIR|MIR3	-	chr9	128177587	128180798	CIZ1|ENST00000476239.5	-	128177587,128178368,128178708,128179243,128180414,128180720	128177763,128178490,128178904,128179415,128180523,128180798	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	127330853	127330878	127330859	-	High_confidence	4	4	12	0.381711	3.277613	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.750000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	2726956	2726963	2726962	+	High_confidence	4	4	9	0.286283	2.725481	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.555556
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	102947722	102947723	102947722	-	RAMPAGE_only	6	6	6	0.190855	2.584963	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.666667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	104116273	104116305	104116273	+	RAMPAGE_only	3	3	15	0.477138	3.456565	chr9	104116275	104116318	DNA|hAT-Charlie|MER5A	+	chr9	104094563	104139651	SMC2|ENST00000374787.7	+	104094563,104095323,104096147,104098445,104099643,104100092,104100388,104101959,104102423,104111580,104113315,104113963,104114690,104116199,104118170,104120026,104123107,104124911,104126640,104127285,104129644,104132008,104134414,104138017,104139138	104094838,104095552,104096297,104098568,104099682,104100203,104100433,104102193,104102573,104111814,104113475,104114081,104114829,104116319,104118375,104120162,104123232,104125105,104126784,104127480,104129845,104132125,104134575,104138165,104139651	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr13	48446737	48446738	48446737	+	RAMPAGE_only	9	9	12	0.381711	3.459432	chr13	48446345	48447306	LINE|L2|L2a	-	chr13	48303746	48481890	RB1|NM_000321.2	+	48303746,48307279,48342598,48345079,48347824,48348955,48360016,48362814,48364893,48367493,48368526,48373404,48376917,48379593,48380052,48380164,48381246,48452992,48456203,48459687,48463730,48464997,48465204,48473359,48476700,48477354,48479997	48304049,48307406,48342714,48345199,48347863,48349023,48360127,48362957,48364971,48367603,48368604,48373492,48377034,48379650,48380084,48380241,48381443,48453111,48456349,48459833,48463835,48465111,48465368,48473390,48476843,48477404,48481890	0.916667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	77011245	77011286	77011249	+	RAMPAGE_only	41	42	105	3.339968	5.939958	chr4	77011235	77011415	DNA|hAT-Charlie|MER117	+	chr4	76949836	77034821	SEPT11|ENST00000510515.5	+	76949836,76987808,76995780,76996424,77005600,77011734,77014855,77019164,77020501,77028628,77030782,77034496	76949930,76987870,76995938,76996539,77005796,77011921,77015017,77019261,77020670,77028761,77030970,77034821	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	4054155	4054156	4054155	-	RAMPAGE_only	10	10	11	0.349901	3.121928	chr16	4053972	4054213	LINE|L2|L2a	+	chr16	3989083	4113925	ADCY9|ENST00000571467.1	-	3989083,3992145,3993348,4113749	3989096,3992363,3993510,4113925	0.636364
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	23357330	23357347	23357341	-	RAMPAGE_only	8	8	22	0.699803	3.558519	chr7	23357268	23357392	SINE|Alu|AluSq2	-	chr7	23347662	23394677	IGF2BP3|ENST00000492771.5	-	23347662,23351304,23361533,23361689,23394583	23347734,23351586,23361597,23361741,23394677	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	42644605	42644622	42644605	-	High_confidence	3	3	12	0.381711	3.027169	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	0.916667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	168555473	168555538	168555537	-	RAMPAGE_only	5	6	30	0.954277	3.681728	chr5	168555251	168555542	SINE|Alu|AluSx	-	chr5	168548494	168579600	PANK3|ENST00000239231.6	-	168548494,168559031,168561392,168563888,168566012,168568645,168579255	168557621,168559157,168561516,168564065,168566266,168568998,168579600	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr21	14882004	14882005	14882004	-	High_confidence	159	160	165	5.248521	6.163279	chr21	14881808	14882178	LTR|ERVL-MaLR|MLT1A0	-	chr21	14852970	14881975	LINC02246|ENST00000418954.2	-	14852970,14857541,14881886	14853431,14857708,14881975	0.581818
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	32075879	32075880	32075879	+	High_confidence	4	4	7	0.222665	2.521641	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076113	32090780	ARHGAP5|ENST00000555814.1	+	32076113,32076457,32090501	32076217,32076657,32090780	0.571429
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	34860633	34860646	34860633	-	High_confidence	5	5	9	0.286283	2.750000	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.666667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	9716977	9716983	9716982	+	RAMPAGE_only	4	5	11	0.349901	3.321928	chr11	9716634	9717133	LINE|L2|L2	-	chr11	9720065	9738259	SWAP70|ENST00000534662.1	+	9720065,9724657,9728052,9729342,9732528,9738212	9720483,9724885,9728199,9729451,9732710,9738259	0.909091
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	11763037	11763075	11763051	+	RAMPAGE_only	13	14	36	1.145132	4.594672	chr2	11762961	11763163	LINE|L2|L2	-	chr2	11746633	11767858	LPIN1|ENST00000441684.5	+	11746633,11763022,11765532,11767762	11746671,11763286,11765733,11767858	0.694444
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	227142956	227143002	227142956	-	RAMPAGE_only	8	8	32	1.017895	4.241729	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.750000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	93504673	93504674	93504673	-	RAMPAGE_only	7	7	8	0.254474	2.807355	chr5	93504513	93504869	LTR|ERVL-MaLR|THE1A	-	chr5	93411017	93438737	NR2F1-AS1|ENST00000606188.1	-	93411017,93438702	93411509,93438737	0.625000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	98733157	98733204	98733165	+	High_confidence	6	6	28	0.890658	3.854286	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	33813222	33813223	33813222	+	RAMPAGE_only	15	18	19	0.604375	3.366091	chr20	33812865	33813547	LINE|L2|L2a	-	chr20	33811303	33854367	CHMP4B|NM_176812.4	+	33811303,33848466,33850951,33852076,33853495	33811658,33848644,33851066,33852203,33854367	0.947368
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	41604044	41604061	41604044	-	RAMPAGE_only	4	5	14	0.445329	2.985228	chr22	41603905	41604023	LINE|L2|L2c	-	chr22	41600892	41602523	DESI1|ENST00000468151.1	-	41600892,41602423	41601190,41602523	0.928571
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	174118081	174118130	174118084	-	RAMPAGE_only	9	12	37	1.176941	4.207436	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075408	174124315	OLA1|ENST00000392560.6	-	174075408,174078967,174081151,174081923,174123179,174123594,174124263	174075527,174079090,174081248,174082064,174123277,174123675,174124315	0.513514
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	113625655	113625691	113625674	-	RAMPAGE_only	3	3	14	0.445329	3.392747	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	0.928571
mammary_microvascular_endothelial_cell_female_adult_26_years	chr21	41430558	41430590	41430589	+	RAMPAGE_only	5	5	14	0.445329	3.546594	chr21	41429929	41430715	DNA|hAT-Charlie|Charlie2b	+	chr21	41431713	41459214	MX1|ENST00000288383.10	+	41431713,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41432175,41435960,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	0.928571
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	140700445	140700457	140700445	+	High_confidence	986	1347	3589	114.163280	4.774392	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.980217
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	46181621	46181637	46181632	+	RAMPAGE_only	2	2	8	0.254474	2.807355	chr1	46181615	46181833	LINE|L2|L2b	-	chr1	46183432	46185308	TSPAN1|ENST00000464786.5	+	46183432,46184190,46184593,46184784,46184959,46185224	46183683,46184397,46184668,46184883,46185115,46185308	0.625000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	39809950	39810034	39810033	-	High_confidence	143	143	317	10.083522	5.832687	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.911672
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	25861735	25861747	25861746	+	High_confidence	14	15	23	0.731612	4.229871	chr4	25861658	25861751	DNA|hAT?|UCON80	+	chr4	25861829	25929545	SMIM20|ENST00000515764.2	+	25861829,25928312,25929153	25862153,25928369,25929545	0.869565
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	15305736	15305738	15305737	+	High_confidence	11	23	25	0.795230	4.349649	chr1	15305544	15305895	LTR|ERVL-MaLR|THE1A	+	chr1	15305760	15330059	FHAD1|ENST00000375996.6	+	15305760,15308612,15313056,15316377,15317823,15324451,15327058,15328276,15329345	15305819,15308736,15313187,15316467,15317928,15324559,15327142,15328429,15330059	0.720000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	119046561	119046648	119046588	-	RAMPAGE_only	7	10	48	1.526842	3.996648	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.895833
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	54413473	54413493	54413473	-	High_confidence	22	31	78	2.481119	5.374955	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54243236	54413479	SSBP3|ENST00000525990.1	-	54243236,54251615,54251793,54257126,54281437,54401860,54404575,54404857,54413355	54243299,54251692,54251860,54257186,54281527,54401945,54404637,54404930,54413479	0.589744
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	72846148	72846177	72846148	+	RAMPAGE_only	4	4	12	0.381711	2.663533	chr5	72846047	72846453	LINE|L1|L1ME3A	+	chr5	72848102	72914388	TNPO1|NM_153188.2	+	72848102,72848384,72851243,72855773,72861807,72865595,72872638,72875614,72877227,72882466,72883063,72887069,72888077,72889785,72891809,72893138,72893376,72893615,72896457,72897055,72900005,72900973,72903708,72905302,72908708	72848251,72848498,72851319,72855923,72861914,72865729,72872720,72875737,72877346,72882527,72883232,72887222,72888303,72889957,72891896,72893246,72893535,72893703,72896556,72897151,72900081,72901073,72903783,72905445,72914388	0.916667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	11681430	11681447	11681436	+	High_confidence	26	29	56	1.781316	5.144641	chr2	11681255	11681626	LTR|ERVL-MaLR|MSTA	+	chr2	11681459	11683323	AC106875.1|ENST00000455754.1	+	11681459,11682297	11681492,11683323	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	122802348	122802349	122802348	-	RAMPAGE_only	7	7	9	0.286283	2.947703	chr7	122802319	122802451	LINE|L2|L2b	+	chr7	122320002	122886357	CADPS2|ENST00000449022.6	-	122320002,122325476,122345573,122360787,122360929,122379367,122387025,122388582,122393195,122393440,122407539,122414067,122416060,122438340,122441511,122451373,122471374,122474380,122480851,122490080,122491311,122513248,122554549,122581178,122615180,122621480,122629247,122663236,122736954,122885998	122320338,122325581,122345681,122360820,122361013,122379442,122387173,122388738,122393315,122393582,122407696,122414076,122416164,122438464,122441575,122451475,122471562,122474517,122480860,122490281,122491420,122513315,122554689,122581290,122615299,122621717,122629328,122663569,122737068,122886357	0.777778
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	104280730	104280845	104280753	-	High_confidence	35	39	387	12.310167	6.795474	chr12	104280524	104280952	LTR|ERVL|MLT2D	+	chr12	104262313	104280722	AC089983.1|ENST00000549807.1	-	104262313,104280283	104262575,104280722	0.857881
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	6590246	6590275	6590257	+	High_confidence	3	3	18	0.572566	3.572469	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	MSTRG.26720.3	+	6590143,6590424,6591645,6594434,6599828,6602100,6607959	6590352,6590475,6591867,6594600,6600356,6602140,6608724	0.888889
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	127330926	127330929	127330926	-	High_confidence	6	6	14	0.445329	3.235926	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.928571
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	17779603	17779604	17779603	-	High_confidence	4	4	7	0.222665	2.521641	chr6	17779257	17779571	SINE|Alu|AluSp	-	chr6	17763694	17779686	MSTRG.25105.5	-	17763694,17770745,17771907,17773477,17775014,17777276,17778946,17779591	17764946,17770787,17772059,17773583,17775062,17777354,17779099,17779686	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	128684459	128684480	128684476	-	RAMPAGE_only	9	9	31	0.986086	3.925993	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.838710
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	74738466	74738467	74738466	-	RAMPAGE_only	33	33	38	1.208750	4.984770	chr15	74738305	74738647	LTR|ERVL-MaLR|THE1B	-	chr15	74719541	74725610	CYP1A1|ENST00000379727.7	-	74719541,74720966,74721198,74721413,74721590,74722272,74725440	74720774,74721053,74721322,74721503,74721717,74723126,74725610	0.868421
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	103627089	103627090	103627089	+	RAMPAGE_only	4	5	6	0.190855	2.584963	chrX	103626903	103627134	SINE|MIR|MIR	-	chrX	103607970	103629690	TCEAL3|ENST00000477014.1	+	103607970,103608603,103610510,103625317,103627040,103628405,103629493	103608058,103608673,103610607,103625435,103627154,103628793,103629690	0.666667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	140655883	140655987	140655986	+	RAMPAGE_only	10	20	149	4.739573	5.315751	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.993289
mammary_microvascular_endothelial_cell_female_adult_26_years	chr13	99496744	99496756	99496744	-	High_confidence	4	4	14	0.445329	3.378783	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	111911611	111911613	111911611	+	High_confidence	5	9	13	0.413520	3.418296	chr3	111911655	111911757	DNA|hAT-Ac|OldhAT1	+	chr3	111911609	111976465	PHLDB2|ENST00000495180.1	+	111911609,111913318,111919071,111920281,111932268,111939474,111940534,111945267,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111911724,111913702,111919215,111920419,111932397,111939630,111940645,111945357,111954029,111962312,111966703,111967824,111969909,111973817,111976465	0.923077
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	113873322	113873347	113873346	-	High_confidence	4	4	11	0.349901	2.646439	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.636364
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	48868516	48868631	48868613	-	High_confidence	52	58	420	13.359871	6.959836	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.988095
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	89672367	89672405	89672367	+	High_confidence	9	11	35	1.113323	4.822001	chr16	89672251	89672492	LTR|ERV1|MER4C	+	chr16	89671567	89685304	AC010538.1|ENST00000615131.2	+	89671567,89682313,89683710	89672867,89682496,89685304	0.800000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	102973265	102973291	102973265	-	RAMPAGE_only	5	5	13	0.413520	3.026987	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102926282	102933735	FBXL13|ENST00000468216.1	-	102926282,102931880,102933320	102926374,102931933,102933735	0.615385
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	86225593	86225596	86225593	-	RAMPAGE_only	4	4	8	0.254474	2.521641	chr2	86225275	86225570	SINE|Alu|AluSp	-	chr2	86214250	86223785	REEP1|ENST00000646181.1	-	86214250,86219969,86223488	86217110,86220140,86223785	0.750000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	8681676	8681677	8681676	+	High_confidence	12	12	14	0.445329	3.546594	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.928571
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	3536496	3536516	3536515	-	High_confidence	10	13	33	1.049704	4.567100	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.696970
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	95509594	95509627	95509594	-	RAMPAGE_only	7	9	27	0.858849	4.546594	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	0.962963
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	11634277	11634294	11634277	-	RAMPAGE_only	5	5	10	0.318092	3.121928	chr3	11634009	11634538	LINE|L2|L2	+	chr3	11559350	11627406	VGLL4|ENST00000458499.5	-	11559350,11564796,11601832,11626356,11627315	11559455,11565019,11602022,11626513,11627406	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	134485387	134485494	134485443	-	High_confidence	16	18	130	4.135198	5.995069	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.976923
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	16981569	16981637	16981588	-	High_confidence	105	105	713	22.679972	5.440903	chr1	16981567	16981905	LTR|ERV1|LTR64	+	chr1	16974501	16981586	MFAP2|NM_001135247.1	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16981513	16975023,16975342,16975730,16976545,16976794,16976923,16977195,16978314,16981586	0.969144
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	53086997	53087020	53087019	-	High_confidence	4	4	8	0.254474	2.807355	chr19	53086959	53087288	LINE|L2|L2a	-	chr19	53066613	53087037	ZNF160|NM_001322136.1	-	53066613,53074139,53075056,53086261,53086930	53070262,53074268,53075183,53086321,53087037	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	6016524	6016623	6016524	-	RAMPAGE_only	10	12	108	3.435395	5.626334	chr12	6016356	6016502	SINE|MIR|MIR3	-	chr12	5948873	6124675	VWF|ENST00000261405.9	-	5948873,5949785,5951843,5952390,5953495,5967485,5968126,5969210,5971598,5976110,5981785,5983149,5985044,5985562,5991818,5993861,5994414,5996001,6011616,6012086,6013480,6016088,6016515,6016753,6018364,6021899,6022739,6023630,6025579,6025905,6029341,6031443,6034687,6036387,6044290,6046722,6052542,6056856,6057848,6062953,6064245,6065136,6071296,6072330,6073618,6075334,6095459,6110373,6110865,6121173,6123141,6124420	5949203,5949883,5951883,5952519,5953594,5967602,5968167,5969391,5971709,5976260,5981991,5983254,5985119,5985665,5992018,5994203,5994607,5996222,6011794,6012130,6013645,6016232,6016656,6016870,6019743,6022035,6022898,6023787,6025693,6026046,6029488,6031578,6034826,6036491,6044451,6046817,6052783,6057072,6058044,6063054,6064384,6065273,6071343,6072442,6073741,6075551,6095584,6110582,6110968,6121338,6123196,6124675	0.981481
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	18149863	18149869	18149868	+	High_confidence	112	112	283	9.002008	5.749158	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.978799
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	36755038	36755085	36755038	-	RAMPAGE_only	8	8	32	1.017895	4.365014	chr20	36754971	36755078	LTR|ERVL|LTR33	+	chr20	36751794	36773720	DSN1|ENST00000373740.7	-	36751794,36754762,36755681,36758086,36758557,36762460,36766768,36767968,36770872,36771424,36773661	36752897,36754850,36755829,36758161,36758617,36762548,36766841,36768042,36770977,36771473,36773720	0.968750
mammary_microvascular_endothelial_cell_female_adult_26_years	chr15	75347042	75347066	75347065	+	High_confidence	6	6	15	0.477138	3.640224	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347068	75349024	NEIL1|ENST00000568881.1	+	75347068,75347958,75348883	75347473,75347999,75349024	0.800000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	2975656	2975682	2975660	+	RAMPAGE_only	10	21	61	1.940362	5.315823	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.918033
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	48590006	48590053	48590029	+	High_confidence	15	15	33	1.049704	4.680758	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48590041	48605193	MSTRG.31008.2	+	48590041,48597957,48598716,48599352,48599586,48600318,48601783,48602064,48604271,48604847	48590287,48598037,48598957,48599462,48599717,48600626,48601964,48602206,48604390,48605193	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr18	69947880	69947907	69947890	-	High_confidence	2	2	13	0.413520	3.251629	chr18	69947667	69947857	LINE|L2|L2a	-	chr18	69862955	69947853	CD226|NM_001303618.1	-	69862955,69867356,69873143,69895700,69946733,69947360	69864439,69867411,69873246,69896045,69947069,69947853	0.923077
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	131316069	131316091	131316069	+	RAMPAGE_only	2	2	6	0.190855	2.584963	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131287659	131393106	MSTRG.24343.11	+	131287659,131315975,131359208,131385542,131390992,131391828	131287751,131316144,131359547,131385644,131391108,131393106	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	32982549	32982592	32982550	+	High_confidence	18	26	57	1.813125	4.983645	chr10	32982518	32982768	SINE|Alu|AluSz6	-	chr10	32982540	33082102	ITGB1-DT|ENST00000414157.1	+	32982540,32985622,33081341	32982685,32985757,33082102	0.666667
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	150567268	150567288	150567287	+	High_confidence	4	4	8	0.254474	3.000000	chr7	150567129	150567290	DNA|hAT-Charlie|MER3	-	chr7	150567276	150573955	GIMAP4|ENST00000255945.3	+	150567276,150569887,150572128	150567437,150569959,150573955	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	158660263	158660264	158660263	+	High_confidence	6	6	8	0.254474	2.500000	chr3	158660248	158660547	SINE|Alu|AluSq2	-	chr3	158660263	158665407	GFM1|ENST00000490261.1	+	158660263,158660873,158662627,158665336	158660624,158660975,158662684,158665407	0.750000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	2242922	2242923	2242922	+	High_confidence	66	66	66	2.099408	5.373717	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	307580	307581	307580	-	RAMPAGE_only	12	12	12	0.381711	3.418296	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	0.750000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	61618974	61618986	61618985	-	RAMPAGE_only	3	3	7	0.222665	2.521641	chr14	61618926	61619351	LINE|L1|L1MB2	+	chr14	61556271	61570653	LOC101927780|NR_110416.1	-	61556271,61560742,61565319,61569543,61570485	61556552,61565241,61565388,61569677,61570653	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	27121399	27121439	27121399	-	RAMPAGE_only	13	14	24	0.763421	3.490602	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	130894344	130894356	130894344	-	RAMPAGE_only	4	4	8	0.254474	3.000000	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	13037387	13037412	13037399	+	RAMPAGE_only	7	7	52	1.654079	4.966370	chr19	13037335	13037620	LINE|CR1|L3b	+	chr19	13024938	13094770	NFIX|ENST00000587260.1	+	13024938,13073046,13073421,13073905,13075534,13078612,13081679,13090298,13094634	13025552,13073109,13073496,13074026,13075671,13078735,13081855,13090390,13094770	0.961538
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	13881847	13881858	13881857	-	RAMPAGE_only	3	3	7	0.222665	2.807355	chr10	13881636	13881990	LINE|L2|L2b	-	chr10	13646333	13891729	MSTRG.3194.4	-	13646333,13651902,13654415,13656635,13659322,13660315,13663452,13666096,13670405,13674910,13693481,13693897,13701339,13707036,13737843,13740193,13740511,13747735,13761646,13762623,13782921,13796495,13810813,13858846,13891623	13647035,13651974,13654512,13657522,13659490,13660553,13663509,13666325,13670528,13675044,13693517,13694039,13701478,13707113,13737930,13740251,13740577,13747819,13761669,13762680,13783006,13796588,13810908,13858912,13891729	0.714286
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	89327662	89327680	89327679	+	High_confidence	6	6	11	0.349901	3.459432	chr10	89327579	89327747	LTR|ERV1|MER4B	-	chr10	89327818	89340968	IFIT3|NM_001549.5	+	89327818,89338660	89328078,89340968	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	48589435	48589477	48589466	+	High_confidence	4	4	11	0.349901	3.459432	chrX	48589438	48589499	SINE|Alu|AluJo	-	chrX	48589458	48599682	MSTRG.31008.1	+	48589458,48589826,48597957,48598750,48599352,48599586	48589529,48589940,48598037,48598957,48599462,48599682	0.818182
mammary_microvascular_endothelial_cell_female_adult_26_years	chr20	3208675	3208676	3208675	+	High_confidence	5	6	7	0.222665	2.521641	chr20	3208670	3208727	DNA|hAT-Charlie|MER5A	-	chr20	3208867	3223870	ITPA|ENST00000483354.5	+	3208867,3213168,3213984,3215280,3218516,3221840,3223365	3209033,3213226,3214058,3215312,3218632,3221917,3223870	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	70394883	70394884	70394883	+	High_confidence	18	18	19	0.604375	3.572431	chr6	70394625	70395013	LTR|ERV1|MER48	+	chr6	70394886	70399417	AL365226.2|ENST00000418403.1	+	70394886,70395229,70399214	70395043,70395266,70399417	0.789474
mammary_microvascular_endothelial_cell_female_adult_26_years	chr14	51554695	51554696	51554695	+	High_confidence	6	6	8	0.254474	3.000000	chr14	51553917	51555014	LINE|L1|L1MC3	+	chr14	51554659	51579297	FRMD6|ENST00000555952.5	+	51554659,51570347,51578971	51554805,51570410,51579297	0.625000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	107580506	107580553	107580552	+	High_confidence	11	11	34	1.081513	4.734522	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.735294
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	152412488	152412529	152412528	-	High_confidence	6	6	12	0.381711	3.418296	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	188153195	188153210	188153209	+	High_confidence	2	2	7	0.222665	2.584963	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	25458330	25458358	25458334	+	High_confidence	27	35	88	2.799211	5.859554	chr3	25458211	25458428	LINE|L1|L1ME4a	+	chr3	25458309	25597932	RARB|NM_001290217.1	+	25458309,25461192,25501181,25569757,25580545,25593502,25594519,25596419	25458393,25461341,25501323,25569918,25580722,25593707,25594678,25597932	0.715909
mammary_microvascular_endothelial_cell_female_adult_26_years	chr22	37755631	37755642	37755641	+	RAMPAGE_only	9	11	20	0.636184	3.546439	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	0.850000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	96303166	96303211	96303177	-	RAMPAGE_only	24	27	80	2.544737	5.015111	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	57641604	57641683	57641604	+	High_confidence	6	6	40	1.272369	4.803056	chr16	57641565	57641864	SINE|Alu|AluSz6	-	chr16	57640964	57651468	ADGRG1|ENST00000563414.5	+	57640964,57641590,57650252,57651199	57641064,57641708,57650351,57651468	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	32139758	32139759	32139758	+	RAMPAGE_only	7	8	11	0.349901	3.095795	chr1	32139701	32139948	LINE|L1|L1MC5	+	chr1	32142922	32162394	KPNA6|ENST00000469790.1	+	32142922,32154587,32156852,32157345,32158266,32159399,32160614,32161946,32162360	32143024,32154721,32156945,32157445,32158361,32159531,32160703,32162046,32162394	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	5054411	5054421	5054420	-	High_confidence	4	5	11	0.349901	2.550341	chr6	5054202	5054422	SINE|MIR|MIRb	-	chr6	5031755	5054423	AL359643.2|ENST00000606227.1	-	5031755,5054077	5034682,5054423	0.818182
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	174118195	174118212	174118195	-	RAMPAGE_only	3	3	6	0.190855	2.584963	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075408	174124315	OLA1|ENST00000392560.6	-	174075408,174078967,174081151,174081923,174123179,174123594,174124263	174075527,174079090,174081248,174082064,174123277,174123675,174124315	0.833333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	3575583	3575625	3575624	+	High_confidence	4	4	16	0.508947	3.506891	chr19	3575668	3575971	SINE|Alu|AluSx1	+	chr19	3575650	3578671	HMG20B|ENST00000487894.5	+	3575650,3576552,3576891,3577980,3578508	3576307,3576625,3577107,3578113,3578671	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	13794241	13794242	13794241	-	RAMPAGE_only	11	11	14	0.445329	3.085055	chr6	13794117	13794268	SINE|Alu|FLAM_C	-	chr6	13787133	13801345	MCUR1|ENST00000607303.1	-	13787133,13788645,13791877,13793893,13798832,13800340,13801287	13787355,13788704,13791992,13793947,13798904,13800382,13801345	0.928571
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	166850222	166850241	166850222	+	RAMPAGE_only	3	3	9	0.286283	2.500000	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.888889
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	77142345	77142359	77142345	+	High_confidence	10	10	18	0.572566	3.969816	chr17	77142294	77142578	SINE|Alu|AluJb	+	chr17	77141385	77216802	MSTRG.13819.34	+	77141385,77142645,77143566,77190802,77191180,77193420,77194676,77196201,77200483,77203569,77205275,77206228,77206727,77209341,77211949,77213313,77213917,77216400	77141721,77142750,77143659,77190952,77191312,77193549,77194911,77196311,77200673,77203658,77205346,77206400,77206862,77209476,77212201,77213492,77215727,77216802	0.944444
mammary_microvascular_endothelial_cell_female_adult_26_years	chr9	131117421	131117516	131117515	+	RAMPAGE_only	55	56	136	4.326054	4.685563	chr9	131117448	131117590	SINE|MIR|MIR	-	chr9	131111401	131120438	AIF1L|ENST00000372301.2	+	131111401,131114576,131117755,131120234	131111663,131114618,131117918,131120438	0.970588
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	151676392	151676452	151676392	-	RAMPAGE_only	7	7	29	0.922467	4.513153	chr5	151676278	151676631	DNA|hAT-Charlie|MER113	+	chr5	151667473	151671829	SPARC|ENST00000524277.1	-	151667473,151669663,151671572	151667600,151669784,151671829	0.896552
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	158660289	158660295	158660294	+	High_confidence	4	4	9	0.286283	3.000000	chr3	158660248	158660547	SINE|Alu|AluSq2	-	chr3	158660263	158665407	GFM1|ENST00000490261.1	+	158660263,158660873,158662627,158665336	158660624,158660975,158662684,158665407	0.888889
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	179118680	179118681	179118680	-	RAMPAGE_only	12	14	16	0.508947	3.625000	chr1	179118593	179118709	LINE|RTE-BovB|MamRTE1	-	chr1	179107717	179143044	ABL2|ENST00000504405.5	-	179107717,179109207,179110281,179112308,179114877,179117331,179118586,179120189,179121594,179126376,179131310,179142932	179108898,179109441,179110455,179112398,179115030,179117516,179118764,179120274,179121867,179126672,179131481,179143044	0.937500
mammary_microvascular_endothelial_cell_female_adult_26_years	chr21	45593653	45593654	45593653	+	High_confidence	4	4	7	0.222665	2.584963	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	19344364	19344429	19344364	-	RAMPAGE_only	8	8	32	1.017895	4.452820	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	48727401	48727421	48727401	-	RAMPAGE_only	9	10	23	0.731612	4.277613	chr19	48727220	48727380	SINE|MIR|MIR3	-	chr19	48720584	48740713	RASIP1|NM_017805.2	-	48720584,48721853,48724336,48724716,48726784,48727006,48727392,48728936,48735195,48738959,48740145,48740520	48720997,48722001,48724509,48724960,48726888,48727158,48727430,48729590,48735551,48739645,48740286,48740713	0.956522
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	48199387	48199391	48199387	-	RAMPAGE_only	3	3	9	0.286283	2.500000	chr17	48199174	48199607	LINE|L2|L2c	+	chr17	48180091	48185179	SKAP1|ENST00000579336.1	-	48180091,48182393,48184722	48180248,48182457,48185179	0.777778
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	116327899	116327912	116327911	-	High_confidence	282	336	840	26.719742	7.644390	chr7	116327809	116328061	SINE|MIR|MIRb	-	chr7	116275290	116327912	MSTRG.27727.4	-	116275290,116327831	116277432,116327912	0.776190
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	102973485	102973526	102973514	+	High_confidence	5	6	29	0.922467	4.651084	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973521	102988856	NFE4|ENST00000420058.1	+	102973521,102978380,102988032,102988374	102973771,102978520,102988232,102988856	0.689655
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	160938585	160938609	160938608	-	High_confidence	11	11	18	0.572566	3.572469	chr5	160938478	160938828	LTR|ERVL|LTR18A	-	chr5	160931777	160938626	LINC02159|ENST00000518580.5	-	160931777,160935989,160938453	160933807,160936109,160938626	0.555556
mammary_microvascular_endothelial_cell_female_adult_26_years	chr2	85354979	85354980	85354979	-	RAMPAGE_only	8	8	8	0.254474	2.500000	chr2	85354968	85355072	SINE|MIR|MIR3	+	chr2	85318023	85328425	TGOLN2|ENST00000377386.7	-	85318023,85324914,85326507,85327916	85322741,85324998,85327685,85328425	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	43452925	43452961	43452934	-	High_confidence	5	5	17	0.540757	3.750000	chr1	43452925	43453093	LINE|L2|L2c	+	chr1	43451159	43453909	HYI|ENST00000372427.5	-	43451159,43451427,43451647,43451797,43451934,43452204	43451311,43451544,43451717,43451847,43452013,43453909	0.882353
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	75891300	75891305	75891300	+	RAMPAGE_only	7	7	14	0.445329	3.664498	chr6	75891350	75891661	SINE|Alu|AluY	+	chr6	75817523	75915177	MYO6|ENST00000627432.2	+	75817523,75822781,75828539,75830415,75832841,75835900,75840584,75841213,75844896,75848350,75855138,75857096,75858901,75861022,75862595,75866525,75866931,75870646,75873206,75879819,75880042,75881688,75886003,75886843,75890056,75891227,75892529,75894813,75895230,75898372,75907604,75908495,75911671,75914062,75914812	75817664,75822851,75828613,75830545,75832947,75835956,75840682,75841378,75844977,75848531,75855283,75857254,75858993,75861095,75862723,75866621,75867105,75870685,75873300,75879950,75880120,75881818,75886094,75886994,75890265,75891306,75892690,75894840,75895260,75898411,75907708,75908627,75911698,75914281,75915177	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr4	152627504	152627526	152627504	-	RAMPAGE_only	7	7	12	0.381711	3.251629	chr4	152627498	152627643	DNA|hAT-Charlie|MER117	+	chr4	152618631	152680165	TMEM154|ENST00000304385.7	-	152618631,152640927,152643087,152644414,152652537,152652666,152679869	152628561,152640985,152643173,152644442,152652576,152652927,152680165	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	108694070	108694085	108694080	+	RAMPAGE_only	4	4	16	0.508947	3.750000	chr11	108693990	108694260	DNA|TcMar-Tigger|MER44B	-	chr11	108717518	108940808	MSTRG.5697.5	+	108717518,108719796,108722996,108838445,108841314,108852152,108917872,108940245	108717615,108719885,108723462,108838565,108841476,108852209,108918018,108940808	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	135965670	135965734	135965723	+	High_confidence	27	37	170	5.407567	6.267136	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.935294
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	129584022	129584034	129584033	-	RAMPAGE_only	3	3	8	0.254474	2.807355	chr6	129583973	129584076	LINE|RTE-BovB|MamRTE1	-	chr6	129576131	129710225	ARHGAP18|ENST00000368149.2	-	129576131,129580069,129583987,129599215,129600641,129605876,129607892,129611532,129616211,129618686,129629352,129634041,129638393,129641815,129710023	129578604,129580131,129584112,129599356,129600848,129605959,129608052,129611610,129616303,129618852,129629522,129634105,129638629,129642018,129710225	0.875000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	15643151	15643178	15643177	+	RAMPAGE_only	4	4	12	0.381711	3.277613	chr8	15642966	15643302	LTR|ERVL-MaLR|THE1C	+	chr8	15623079	15758277	TUSC3|ENST00000511783.2	+	15623079,15650696,15659506,15662155,15673746,15730665,15743537,15748374,15757790,15758033	15623249,15650814,15659647,15662296,15673836,15730729,15743612,15748465,15757859,15758277	0.833333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	71999626	71999642	71999641	+	High_confidence	2	3	7	0.222665	2.584963	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr18	22399986	22399987	22399986	-	High_confidence	95	95	122	3.880724	5.438753	chr18	22399873	22400079	SINE|MIR|MIRb	-	chr18	22390917	22400043	MSTRG.14261.1	-	22390917,22399881	22391024,22400043	0.713115
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	28538674	28538687	28538676	-	High_confidence	5	8	18	0.572566	3.614369	chr16	28538407	28538698	SINE|Alu|AluJo	+	chr16	28537506	28538951	NUPR1|ENST00000567646.1	-	28537506,28538005,28538525,28538795	28537669,28538155,28538654,28538951	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr8	102658335	102658355	102658354	-	RAMPAGE_only	4	4	10	0.318092	2.646439	chr8	102657888	102658360	LINE|L2|L2	+	chr8	102648776	102655902	KLF10|NM_005655.3	-	102648776,102651148,102652163,102655565	102650391,102652061,102652397,102655902	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	47179141	47179162	47179141	+	High_confidence	3	3	11	0.349901	2.845351	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	0.909091
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	112452391	112452419	112452415	+	High_confidence	5	7	26	0.827040	4.251629	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112477203	IFRD1|NM_001197079.1	+	112452057,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112452511,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112477203	0.884615
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	47214671	47214674	47214673	+	High_confidence	8	13	13	0.413520	3.546594	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214569	47234653	DDB2|ENST00000614825.4	+	47214569,47215072,47216335,47216857,47232813,47234572	47214674,47215263,47216472,47217049,47232959,47234653	0.846154
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	157579890	157579893	157579892	+	High_confidence	6	10	10	0.318092	2.721928	chr6	157579496	157581898	LINE|L1|L1PA15	-	chr6	157579900	157673529	MSTRG.26492.5	+	157579900,157592987,157628348,157632833,157645736,157647258,157653524,157672768	157579936,157593146,157628486,157632882,157645839,157647368,157653627,157673529	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	96387545	96387562	96387561	-	High_confidence	4	4	8	0.254474	3.000000	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	12572750	12572778	12572777	-	RAMPAGE_only	2	2	11	0.349901	3.321928	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.909091
mammary_microvascular_endothelial_cell_female_adult_26_years	chr12	7137097	7137098	7137097	+	RAMPAGE_only	8	9	12	0.381711	2.625815	chr12	7137127	7137213	SINE|MIR|MIR1_Amn	+	chr12	7138681	7143198	CLSTN3|ENST00000544584.1	+	7138681,7141241,7142085,7142868,7143162	7138816,7141404,7142139,7143026,7143198	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	27332384	27332393	27332392	+	RAMPAGE_only	4	4	13	0.413520	3.546594	chr16	27332160	27332534	LTR|ERVL-MaLR|THE1C	-	chr16	27341288	27364777	IL4R|ENST00000170630.6	+	27341288,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27364777	0.538462
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	104907533	104907547	104907546	-	RAMPAGE_only	34	35	81	2.576547	5.449245	chr3	104907484	104907638	SINE|Alu|AluYh3	+	chr3	104809072	104910023	MSTRG.21217.5	-	104809072,104817472,104829658,104907211,104909873	104809699,104817613,104829713,104907462,104910023	0.864198
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	58578102	58578133	58578132	-	High_confidence	15	21	41	1.304178	4.313460	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.804878
mammary_microvascular_endothelial_cell_female_adult_26_years	chr5	150640314	150640400	150640347	+	High_confidence	397	406	1334	42.433495	6.935656	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640265	150659220	MSTRG.24629.9	+	150640265,150647943,150656403	150640425,150650303,150659220	0.993253
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	149895945	149895966	149895954	-	High_confidence	5	5	12	0.381711	2.918296	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr11	12046579	12046580	12046579	+	High_confidence	32	32	38	1.208750	4.993237	chr11	12046231	12046606	LTR|ERVL-MaLR|THE1D	+	chr11	12046522	12059414	MSTRG.4643.2	+	12046522,12053222,12056309,12058533	12046634,12053383,12056363,12059414	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	209840269	209840285	209840269	+	RAMPAGE_only	2	2	6	0.190855	2.584963	chr1	209840145	209840745	LINE|L2|L2b	-	chr1	209838804	209844632	UTP25|ENST00000457820.1	+	209838804,209840852,209842264	209839128,209841055,209844632	0.500000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	12	13	13	0.413520	3.022055	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	0.923077
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	158720640	158720676	158720675	+	RAMPAGE_only	5	5	12	0.381711	2.913977	chr6	158720644	158720795	SINE|MIR|MIR	-	chr6	158663402	158764876	SYTL3|NM_001318745.1	+	158663402,158665394,158682924,158707229,158708321,158713799,158718086,158725502,158745479,158751927,158757210,158760639,158762075,158763303,158764494	158663625,158665613,158682989,158707281,158708391,158713878,158718211,158725637,158745658,158752030,158757381,158760745,158762178,158763509,158764876	0.583333
mammary_microvascular_endothelial_cell_female_adult_26_years	chr19	58312303	58312333	58312332	+	RAMPAGE_only	3	3	7	0.222665	2.807355	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.857143
mammary_microvascular_endothelial_cell_female_adult_26_years	chr7	1571015	1571037	1571036	-	High_confidence	5	6	10	0.318092	3.169925	chr7	1570731	1571033	SINE|Alu|AluSx	-	chr7	1567612	1571005	PSMG3|ENST00000252329.3	-	1567612,1569123,1570473	1567850,1569360,1571005	0.900000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr3	114624940	114625007	114625006	-	High_confidence	170	187	1097	34.894711	5.511655	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114338652	114624945	MSTRG.21287.10	-	114338652,114350273,114380216,114380776,114383615,114388064,114389004,114500351,114624876	114339426,114351878,114380404,114380940,114383746,114388123,114389105,114500391,114624945	0.936190
mammary_microvascular_endothelial_cell_female_adult_26_years	chr10	35445581	35445603	35445581	+	RAMPAGE_only	4	5	20	0.636184	3.155565	chr10	35445522	35445639	LINE|L2|L2c	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.850000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr6	2990740	2990750	2990742	-	RAMPAGE_only	7	13	29	0.922467	3.583617	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.827586
mammary_microvascular_endothelial_cell_female_adult_26_years	chrX	29660192	29660193	29660192	+	RAMPAGE_only	24	25	35	1.113323	4.653496	chrX	29659858	29660240	LTR|ERVL-MaLR|MSTA	-	chrX	29917462	29955820	IL1RAPL1|ENST00000302196.5	+	29917462,29919948,29941650,29954521,29955101	29917596,29920094,29941794,29954692,29955820	0.685714
mammary_microvascular_endothelial_cell_female_adult_26_years	chr17	8310341	8310342	8310341	+	High_confidence	47	47	47	1.495033	4.493433	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310282	8322516	ARHGEF15|ENST00000361926.7	+	8310282,8311990,8312921,8313500,8314905,8315065,8315413,8315754,8316018,8318386,8318569,8318749,8319006,8319311,8319498,8320841	8310343,8312640,8313254,8313555,8314964,8315277,8315574,8315907,8316148,8318461,8318662,8318910,8319159,8319394,8319603,8322516	1.000000
mammary_microvascular_endothelial_cell_female_adult_26_years	chr1	100268167	100268281	100268280	+	RAMPAGE_only	10	10	124	3.944343	4.299674	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	104763732	104763757	104763755	+	High_confidence	9	12	29	0.931018	4.107011	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	0.965517
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	101308269	101308317	101308299	+	High_confidence	24	28	100	3.210407	5.666370	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.990000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	21818159	21818210	21818159	-	RAMPAGE_only	2	2	18	0.577873	3.690117	chr12	21817882	21818136	LINE|L1|L1PA8A	-	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	0.944444
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	89556703	89556704	89556703	-	High_confidence	16	19	20	0.642081	3.997670	chr10	89556405	89557345	LTR|ERVL|MER21A	+	chr10	89462502	89556641	SLC16A12|ENST00000475682.1	-	89462502,89555881,89556523	89462624,89555981,89556641	0.650000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	13158017	13158028	13158017	-	RAMPAGE_only	2	2	7	0.224729	2.584963	chr9	13157835	13157972	SINE|MIR|MIRb	-	chr9	13106942	13279407	MPDZ|ENST00000546205.5	-	13106942,13108935,13109951,13110635,13112023,13113010,13113930,13115247,13119501,13121738,13122086,13123152,13125215,13126515,13126679,13133823,13136091,13136711,13137956,13139986,13143465,13147547,13150510,13158017,13162690,13165366,13168365,13175751,13176135,13183417,13186269,13188783,13190113,13192130,13193166,13196120,13205035,13205915,13216773,13217179,13219558,13221371,13222232,13223570,13224373,13247634,13250299,13279399	13107111,13109059,13110064,13110740,13112146,13113054,13114021,13115334,13119649,13121932,13122170,13123298,13125390,13126590,13126772,13133904,13136182,13136803,13138153,13140149,13143564,13147658,13150688,13158110,13162795,13165408,13168564,13175875,13176417,13183585,13186386,13188993,13190299,13192295,13193313,13196230,13205107,13206099,13216862,13217294,13219768,13221500,13222446,13223710,13224583,13247801,13250372,13279407	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	27445105	27445108	27445105	-	RAMPAGE_only	3	4	6	0.192624	2.584963	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	58306196	58306214	58306196	+	High_confidence	2	2	8	0.256833	2.500000	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305373	58315202	ERVK3-1|ENST00000427361.5	+	58305373,58306087,58312196,58314747	58305445,58306216,58312462,58315202	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	217363	217398	217363	+	High_confidence	19	19	40	1.284163	5.028992	chr3	217318	217820	LINE|L2|L2a	-	chr3	217534	328223	CHL1|ENST00000449294.6	+	217534,244612,319682,325958,328166	217700,244692,319867,326064,328223	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	155085060	155085078	155085077	+	High_confidence	6	6	14	0.449457	3.700440	chr3	155085055	155085093	LINE|L2|L2	-	chr3	155084167	155183729	MME|ENST00000615825.1	+	155084167,155085058,155114993,155116478,155116663,155116867,155118745,155138101,155140190,155141990,155142236,155143442,155144358,155147143,155148549,155160389,155166901,155168491,155168731,155172116,155172535,155180359	155084327,155085094,155115155,155116559,155116759,155116986,155118811,155138236,155140292,155142127,155142330,155143571,155144457,155147224,155148653,155160448,155167021,155168625,155168797,155172212,155172612,155183729	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	139344535	139344548	139344547	+	High_confidence	99	99	236	7.576562	5.518431	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.957627
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	71578942	71578956	71578955	-	High_confidence	15	18	34	1.091539	4.862576	chr18	71578735	71579218	LTR|ERVL|LTR66	-	chr18	71519961	71578956	LINC01541|ENST00000568095.5	-	71519961,71521988,71527776,71531622,71534213,71548598,71578806	71521082,71523256,71527967,71531816,71534296,71548696,71578956	0.823529
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	22483088	22483089	22483088	-	RAMPAGE_only	11	11	12	0.385249	3.459432	chr12	22482929	22483186	LINE|L1|L1MA2	+	chr12	22449580	22544253	C2CD5|ENST00000542676.5	-	22449580,22453895,22456970,22458483,22459491,22469708,22470823,22471398,22471966,22472285,22472743,22474750,22478312,22482556,22484696,22490122,22493222,22506710,22513293,22517985,22523425,22524471,22525609,22527720,22535257,22544060	22449891,22454042,22457161,22458585,22459542,22469795,22470911,22471488,22472065,22472347,22472807,22474891,22478477,22482743,22484888,22490218,22493337,22506819,22513379,22518137,22523624,22524627,22525705,22527892,22535344,22544253	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	32927967	32927984	32927976	+	RAMPAGE_only	118	126	302	9.695431	6.558222	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.708609
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	20750315	20750363	20750334	-	RAMPAGE_only	4	4	20	0.642081	3.921928	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746922	20755250	AC010329.1|ENST00000593903.1	-	20746922	20755250	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	73	73	73	2.343597	4.123375	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	43250373	43250391	43250373	-	High_confidence	30	31	62	1.990453	5.460976	chr1	43249744	43250419	LTR|ERV1|LOR1-int	-	chr1	43194683	43250391	EBNA1BP2|ENST00000474566.1	-	43194683,43206345,43211449,43215265,43250218	43194949,43206392,43211567,43215393,43250391	0.645161
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	144533089	144533106	144533105	+	RAMPAGE_only	5	5	17	0.545769	3.852169	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	40648567	40648620	40648567	-	High_confidence	5	5	20	0.642081	3.681881	chr17	40648546	40648925	LINE|L2|L2b	+	chr17	40625002	40648654	SMARCE1|ENST00000643318.1	-	40625002,40630713,40631591,40632194,40635930,40636394,40637491,40645795,40647772	40628993,40630924,40631693,40632367,40636102,40636526,40637572,40645847,40648654	0.950000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	15341379	15341380	15341379	-	High_confidence	6	7	7	0.224729	2.584963	chr3	15341159	15341407	LINE|L2|L2a	+	chr3	15269842	15341237	SH3BP5|ENST00000465894.6	-	15269842,15273115,15304102,15330503,15341222	15269877,15273405,15304231,15330566,15341237	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	32684319	32684328	32684319	+	High_confidence	4	5	10	0.321041	3.169925	chr15	32683924	32684364	LTR|ERVL-MaLR|MLT1J1	-	chr15	32684415	32692308	SCG5|ENST00000498607.2	+	32684415,32691709	32684669,32692308	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	66690170	66690174	66690173	+	RAMPAGE_only	8	9	18	0.577873	2.984234	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66738030	66788705	MAST4|ENST00000478569.1	+	66738030,66759708,66783334,66788669	66738257,66759862,66783384,66788705	0.722222
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	20446996	20446997	20446996	-	High_confidence	4	4	7	0.224729	2.584963	chr16	20446813	20447004	SINE|MIR|MIRb	+	chr16	20441249	20447000	AC137056.1|ENST00000575772.1	-	20441249,20442225,20445992,20446866	20441586,20442388,20446111,20447000	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	17376920	17376953	17376920	-	High_confidence	1	1	11	0.353145	3.121928	chr19	17376820	17376901	SINE|MIR|MIR1_Amn	-	chr19	17351447	17377349	PLVAP|NM_031310.2	-	17351447,17360527,17360771,17365285,17366098,17376919	17352368,17360609,17360832,17365998,17366195,17377349	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	36122242	36122251	36122242	-	High_confidence	4	4	12	0.385249	3.277613	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.916667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	37865429	37865442	37865429	+	RAMPAGE_only	4	4	12	0.385249	3.027169	chr10	37865262	37865534	LTR|ERVL|MLT2D	+	chr10	37883593	37884109	ZNF37CP|ENST00000406795.2	+	37883593,37884014	37883739,37884109	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	180830993	180831010	180831009	+	High_confidence	21	21	74	2.375702	5.379939	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.891892
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	91179462	91179526	91179525	-	High_confidence	74	100	341	10.947489	6.553905	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91145258	91179582	DCN|ENST00000393155.5	-	91145258,91151653,91153095,91157074,91158295,91164604,91178341,91179361	91146252,91151792,91153189,91157188,91158509,91164717,91178585,91179582	0.944282
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	47420632	47420638	47420632	-	RAMPAGE_only	3	3	7	0.224729	2.584963	chr11	47420478	47420646	SINE|MIR|MIRb	+	chr11	47418768	47426266	PSMC3|ENST00000602866.5	-	47418768,47419115,47420263,47420630,47422573,47422829,47424045,47424428,47424606,47425120,47425866,47426204	47418945,47419197,47420409,47420727,47422722,47422973,47424183,47424491,47424711,47425246,47425950,47426266	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	40954528	40954547	40954534	+	High_confidence	2	2	8	0.256833	2.807355	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954710	41141048	LOC644919|NR_109758.1	+	40954710,40962789,40974339,41140833	40954952,40962842,40974390,41141048	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	65422500	65422501	65422500	+	RAMPAGE_only	24	27	32	1.027330	4.640224	chr1	65422070	65422538	LTR|ERVL-MaLR|MLT1C	+	chr1	65420715	65436007	LEPROT|NM_001198681.1	+	65420715,65421327,65425302,65429861,65431802	65420740,65421459,65425378,65430048,65436007	0.593750
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	101217578	101217599	101217578	-	High_confidence	5	5	18	0.577873	3.852169	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.944444
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	5726324	5726325	5726324	-	High_confidence	47	50	53	1.701516	4.631272	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.698113
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	1407819	1407847	1407819	-	High_confidence	2	2	10	0.321041	2.947703	chr1	1407717	1407798	SINE|Alu|AluYh9	-	chr1	1401895	1407313	MRPL20|NM_017971.3	-	1401895,1405808,1406908,1407130	1402256,1405886,1407019,1407313	0.600000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	54759973	54759974	54759973	-	High_confidence	9	9	9	0.288937	2.947703	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	44887697	44887698	44887697	+	RAMPAGE_only	5	5	8	0.256833	2.521641	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885751	44901756	YWHAB|ENST00000445830.1	+	44885751,44886878,44887647,44901530	44885886,44886978,44887742,44901756	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	190607095	190607134	190607118	-	RAMPAGE_only	3	3	12	0.385249	2.845351	chr2	190607108	190607299	LINE|L2|L2c	-	chr2	190506892	190534742	NEMP2|NR_136298.1	-	190506892,190510360,190514452,190516269,190517519,190518735,190518951,190525262,190534558	190509312,190510537,190514678,190516338,190517613,190518808,190519183,190525378,190534742	0.916667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	123390760	123390770	123390760	+	High_confidence	4	4	8	0.256833	2.750000	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	86369000	86369018	86369000	+	RAMPAGE_only	4	4	8	0.256833	2.807355	chr8	86368776	86369052	LINE|L2|L2c	+	chr8	86374040	86467476	WWP1|ENST00000265428.4	+	86374040,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	29420553	29420577	29420553	+	RAMPAGE_only	7	7	20	0.642081	4.121928	chr10	29420498	29420628	LINE|L1|L1MA6	+	chr10	29409596	29430591	MSTRG.3106.10	+	29409596,29415356,29420490,29423791	29409683,29415412,29423216,29430591	0.950000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	106845850	106845873	106845858	-	RAMPAGE_only	10	11	21	0.674186	4.106603	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106810441	106811131	IGHV3-74|ENST00000424969.2	-	106810441,106810849	106810746,106811131	0.619048
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	84086745	84086760	84086745	+	RAMPAGE_only	6	6	14	0.449457	3.238901	chr13	84085604	84086932	LTR|ERV1|LTR12C	-	chr13	84140601	84606768	LINC00333|NR_046871.1	+	84140601,84238539,84242062,84562363,84562608,84562791,84606705	84140643,84238600,84242097,84562463,84562676,84563234,84606768	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	78620056	78620058	78620056	+	High_confidence	33	58	59	1.894140	5.232728	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.779661
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	20674497	20674498	20674497	+	High_confidence	184	184	208	6.677648	4.390840	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.908654
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	108691789	108691790	108691789	+	RAMPAGE_only	5	5	7	0.224729	2.807355	chr11	108691082	108691829	DNA|hAT-Charlie|Charlie2b	+	chr11	108665121	108922243	DDX10|ENST00000526794.1	+	108665121,108673466,108675595,108677084,108678314,108679370,108688935,108691875,108693515,108706738,108715878,108719796,108722996,108838445,108841314,108852152,108917872	108665339,108673527,108675726,108677243,108678435,108679560,108689062,108692038,108693600,108706837,108715966,108719885,108723462,108838565,108841476,108852209,108922243	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	2798799	2798810	2798807	+	High_confidence	3	3	12	0.385249	3.251629	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	53811930	53811942	53811930	-	High_confidence	7	7	13	0.417353	3.546594	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.846154
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	28291847	28291848	28291847	+	High_confidence	7	8	8	0.256833	3.000000	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	41871787	41871833	41871819	-	RAMPAGE_only	2	2	9	0.288937	3.169925	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	97911079	97911087	97911086	-	RAMPAGE_only	5	5	11	0.353145	3.121928	chr4	97910849	97912787	LINE|L1|L1PA10	+	chr4	97235643	97893203	STPG2|ENST00000506482.1	-	97235643,97241019,97263447,97712698,97893051	97235721,97241098,97263581,97712814,97893203	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	155478036	155478062	155478061	-	RAMPAGE_only	5	5	16	0.513665	3.906891	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.687500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	144349109	144349110	144349109	+	RAMPAGE_only	8	8	9	0.288937	2.750000	chr6	144349009	144349307	SINE|Alu|AluY	-	chr6	144344100	144426328	UTRN|ENST00000421035.2	+	144344100,144403122,144421877,144423548,144423985,144426286	144344304,144403184,144421970,144423626,144424078,144426328	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	55267619	55267623	55267622	-	High_confidence	3	3	8	0.256833	2.750000	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	107266356	107266357	107266356	+	RAMPAGE_only	9	9	9	0.288937	3.169925	chr4	107265946	107266484	LTR|ERVL|MLT2F	+	chr4	107258699	107301870	AC104663.1|ENST00000508555.1	+	107258699,107301488	107258874,107301870	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	64697022	64697028	64697027	+	RAMPAGE_only	3	3	7	0.224729	2.584963	chr14	64696966	64697260	SINE|Alu|AluSg7	-	chr14	64704101	64741495	MSTRG.8370.1	+	64704101,64727592,64728995,64730242,64730641,64731037,64731360,64731713,64732094,64732426,64732802,64736852,64737355,64737861,64738741,64741035	64704131,64727982,64729093,64730312,64730949,64731169,64731543,64731806,64732181,64732460,64732901,64736891,64737375,64738224,64738855,64741495	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	142344379	142344397	142344379	-	RAMPAGE_only	6	6	11	0.353145	2.663533	chr8	142344146	142344350	DNA|DNA|UCON8	-	chr8	142212166	142354763	TSNARE1|ENST00000520166.5	-	142212166,142229472,142274780,142284412,142300485,142314383,142315002,142318543,142330900,142331753,142343965,142345742,142354636	142212313,142229579,142274863,142284485,142300647,142314440,142315092,142318634,142330970,142331831,142344472,142345892,142354763	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	212440165	212440475	212440346	-	RAMPAGE_only	12	12	244	7.833394	5.338247	chr2	212440122	212440548	LTR|ERVL|MLT2A1	+	chr2	212425408	212446550	MSTRG.17173.12	-	212425408,212426361	212426275,212446550	0.991803
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	97241159	97241170	97241169	+	RAMPAGE_only	3	4	7	0.224729	2.584963	chr2	97241018	97241180	LINE|L2|L2c	+	chr2	97212726	97249050	ANKRD36|ENST00000421946.2	+	97212726,97213541,97215300,97215424,97217176,97217299,97219049,97219173,97224808,97233729,97241265,97243845,97245156,97247475	97213447,97213614,97215329,97215497,97217205,97217372,97219078,97219246,97224879,97233871,97241479,97244029,97246071,97249050	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	126039295	126039304	126039295	-	RAMPAGE_only	5	6	12	0.385249	2.845351	chr10	126038952	126039246	SINE|Alu|AluYc	-	chr10	126012380	126388455	ADAM12|ENST00000368679.8	-	126012380,126019694,126036145,126038240,126039293,126043039,126046054,126049252,126049560,126064805,126066716,126071476,126093984,126098415,126101071,126108592,126109774,126118037,126135583,126155217,126278914,126330411,126388057	126017339,126019825,126036325,126038349,126039429,126043148,126046132,126049451,126049669,126065001,126066806,126071654,126094133,126098500,126101241,126108664,126109840,126118224,126135660,126155305,126278988,126330509,126388455	0.916667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	72363483	72363510	72363509	-	High_confidence	3	3	10	0.321041	3.169925	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	132402801	132402814	132402801	-	High_confidence	33	33	56	1.797828	5.253732	chr6	132402717	132402895	LTR|Gypsy?|LTR88c	+	chr6	132296054	132402515	MSTRG.24691.1	-	132296054,132297786,132315634,132320628,132322678,132323930,132328012,132328414,132372607,132372829,132374630,132401162,132402019	132297317,132297955,132315777,132320688,132322870,132324097,132328115,132328594,132372691,132372997,132374777,132401466,132402515	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	48492758	48492788	48492783	-	High_confidence	14	15	39	1.252059	4.573990	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.743590
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	106839811	106839821	106839813	-	RAMPAGE_only	4	6	13	0.417353	3.392747	chr3	106839527	106839796	LTR|ERV1|LTR37-int	-	chr3	106836810	107240632	LINC00882|ENST00000484698.5	-	106836810,106839474,106920965,106922057,106927834,107040074,107129887,107240442	106838782,106839592,106921060,106922093,106927994,107040116,107129992,107240632	0.692308
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	26399414	26399448	26399442	-	High_confidence	13	15	43	1.380475	4.906159	chr7	26399411	26399720	DNA|hAT-Charlie|MER33	+	chr7	26372018	26399418	LOC105375304|NR_136272.1	-	26372018,26399340	26372568,26399418	0.651163
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	134485387	134485490	134485443	-	High_confidence	51	56	312	10.016471	6.523440	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.935897
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	90135257	90135266	90135264	+	High_confidence	10	20	50	1.605204	4.635118	chr11	90135232	90135308	LINE|L2|L2c	-	chr11	90135063	90149107	NAALAD2|ENST00000526637.1	+	90135063,90135558,90147329,90149005	90135146,90135670,90147516,90149107	0.920000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	74230149	74230157	74230149	-	RAMPAGE_only	5	5	11	0.353145	3.121928	chrX	74228865	74230951	LINE|L1|L1MB7	+	chrX	74219886	74238660	MSTRG.29419.1	-	74219886	74238660	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	52542742	52542768	52542767	+	RAMPAGE_only	4	6	18	0.577873	3.286896	chr19	52542563	52542810	LTR|ERV1|MER4A1	-	chr19	52535984	52553436	ZNF808|ENST00000461321.1	+	52535984,52543265,52547511,52553106	52536046,52543347,52547638,52553436	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	2672739	2672747	2672739	+	High_confidence	3	3	7	0.224729	2.584963	chr17	2672787	2673082	SINE|Alu|AluSq2	+	chr17	2673664	2682348	PAFAH1B1|ENST00000571495.1	+	2673664,2676504,2680163,2681728	2674288,2676606,2680320,2682348	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	185620125	185620144	185620125	-	RAMPAGE_only	5	8	13	0.417353	3.392747	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	147517874	147517875	147517874	-	High_confidence	17	19	20	0.642081	4.247928	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147258884	147517875	LINC00624|ENST00000619867.4	-	147258884,147384667,147408589,147514337,147515520,147517442	147260976,147384863,147408689,147514448,147515676,147517875	0.950000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	58851957	58851958	58851957	+	RAMPAGE_only	7	7	7	0.224729	2.807355	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	80496491	80496511	80496491	+	RAMPAGE_only	3	3	8	0.256833	2.807355	chr2	80496449	80496537	SINE|MIR|MIRc	+	chr2	80378686	80546054	CTNNA2|ENST00000465616.1	+	80378686,80393210,80419448,80544981,80545906	80378781,80393291,80419601,80545074,80546054	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	29647272	29647294	29647272	+	High_confidence	3	3	10	0.321041	3.169925	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	57484854	57484855	57484854	+	RAMPAGE_only	11	13	14	0.449457	3.334679	chr15	57484547	57484897	LINE|L1|L1PA8	-	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.785714
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	57451526	57451598	57451564	+	RAMPAGE_only	10	12	109	3.499344	4.944701	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.981651
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	45585833	45585834	45585833	-	RAMPAGE_only	4	4	7	0.224729	2.807355	chr17	45585678	45585861	SINE|Alu|AluSp	+	chr17	45549780	45558738	AC091132.5|ENST00000586411.1	-	45549780,45550632,45551439,45558385	45550055,45550732,45551537,45558738	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	118020923	118020939	118020931	+	RAMPAGE_only	2	2	8	0.256833	2.521641	chr12	118020805	118020941	LINE|CR1|L3	+	chr12	118024915	118027392	RFC5|ENST00000472603.1	+	118024915,118025746,118026888	118025010,118025828,118027392	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	37147690	37147744	37147708	-	High_confidence	3	4	20	0.642081	4.037401	chr2	37147318	37147662	LINE|L1|L1PA4	-	chr2	37107272	37147806	EIF2AK2|ENST00000405334.5	-	37107272,37107473,37109193,37114730,37119958,37122505,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687	37107395,37107527,37109295,37114859,37120139,37122664,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147806	0.950000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	85710429	85710442	85710441	+	RAMPAGE_only	3	3	7	0.224729	2.521641	chr15	85710130	85710495	LINE|L2|L2c	-	chr15	85635096	85744677	AKAP13|ENST00000560579.5	+	85635096,85639373,85645817,85655416,85658536,85664562,85669721,85682157,85684740,85693276,85708018,85710578,85715787,85717289,85718006,85719075,85721990,85722229,85723071,85726409,85727065,85727380,85730512,85734991,85735559,85736089,85740221,85741045,85743491,85744627	85635105,85639449,85645954,85655787,85658590,85664755,85669830,85682212,85684873,85693451,85708086,85710645,85715923,85717402,85718159,85719326,85722116,85722347,85723320,85726486,85727247,85727463,85730707,85735150,85735630,85736134,85740272,85741495,85743825,85744677	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	45450739	45450766	45450739	-	High_confidence	6	8	26	0.834706	4.403856	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.769231
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	52615383	52615438	52615437	-	High_confidence	5	5	16	0.513665	3.640224	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.812500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	67884947	67885003	67884995	+	RAMPAGE_only	13	13	31	0.995226	4.389898	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.741935
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	149404178	149404187	149404186	-	High_confidence	5	6	11	0.353145	2.921928	chr5	149404176	149404312	LINE|CR1|X7C_LINE	+	chr5	149374266	149404202	IL17B|NM_001317987.1	-	149374266,149376735,149404107	149374600,149377025,149404202	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	72627651	72627662	72627651	-	RAMPAGE_only	4	4	8	0.256833	2.807355	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	18149863	18149869	18149868	+	High_confidence	13	13	25	0.802602	3.534219	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.760000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	10729302	10729338	10729337	-	RAMPAGE_only	8	11	23	0.738394	4.055958	chr11	10729274	10729483	LTR|ERVL|LTR67B	-	chr11	10573090	10693988	MRVI1|NM_001100163.2	-	10573090,10580454,10581866,10591547,10593491,10594145,10600917,10603119,10604404,10606741,10609727,10623777,10625965,10627715,10627972,10628750,10629537,10631990,10633967,10690264,10693535	10576575,10580589,10581986,10591612,10593599,10594195,10601059,10603251,10604545,10606772,10609851,10623856,10626583,10627760,10628025,10628828,10629711,10632061,10634071,10690369,10693988	0.652174
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	856956	856981	856978	+	High_confidence	2	2	8	0.256833	2.750000	chr3	856686	856979	LINE|L1|L1ME3E	+	chr3	857123	858091	AC090044.1|ENST00000423193.1	+	857123,857744	857273,858091	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	154287434	154287470	154287469	+	High_confidence	166	167	281	9.021245	5.672972	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	0.914591
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	21833822	21833906	21833822	-	High_confidence	3	3	28	0.898914	4.209867	chr1	21833729	21833783	LINE|L2|L2c	-	chr1	21829992	21833577	HSPG2|ENST00000635682.1	-	21829992,21830981,21831214,21831462,21831651,21832494,21832874,21833267,21833466	21830091,21831090,21831324,21831562,21831796,21832606,21832892,21833384,21833577	0.928571
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	32613862	32613863	32613862	+	High_confidence	6	6	6	0.192624	2.584963	chr15	32613860	32614055	LINE|CR1|L3	+	chr15	32613732	32615111	AC123768.2|ENST00000500941.2	+	32613732,32614108,32614739	32613998,32614202,32615111	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	93591277	93591383	93591382	+	High_confidence	10	10	62	1.990453	3.561303	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591572	93911075	GNGT1|ENST00000455502.5	+	93591572,93886505,93906735,93909482	93591771,93886549,93906842,93911075	0.774194
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	71547308	71547377	71547376	+	RAMPAGE_only	3	3	24	0.770498	4.220176	chrX	71547285	71547497	DNA|hAT-Charlie|MER103C	-	chrX	71533299	71557047	MSTRG.29376.5	+	71533299,71536177,71537828,71544566,71554512,71555189,71555953,71556679,71556951	71533336,71536358,71538072,71548023,71554592,71555385,71556094,71556780,71557047	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	71378652	71378733	71378685	+	RAMPAGE_only	4	4	23	0.738394	4.004886	chr2	71378470	71379172	LINE|L2|L2a	-	chr2	71331781	71435058	MSTRG.16073.13	+	71331781,71348752,71355718,71363152,71363953,71365428,71368381,71369882,71380512,71396140,71398700,71399558,71400111,71400477,71401955,71403869,71405600,71406127,71408121,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71331865,71350271,71355780,71363191,71364252,71365706,71368528,71380280,71380565,71396191,71398772,71399645,71400180,71400518,71402087,71403998,71405642,71406262,71408247,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435058	0.956522
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	76041371	76041404	76041393	+	High_confidence	6	6	44	1.412579	4.348020	chr1	76041086	76041403	SINE|Alu|AluSq2	-	chr1	76041690	76066228	AC092813.2|ENST00000434540.1	+	76041690,76066037	76041898,76066228	0.545455
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	122556689	122556712	122556711	-	High_confidence	33	36	65	2.086765	5.596328	chr11	122556640	122557789	LTR|ERV1|LTR12D	+	chr11	122154754	122556721	MIR100HG|ENST00000533109.6	-	122154754,122180335,122292283,122293306,122539478,122553938,122556403	122155632,122180398,122292403,122293606,122539506,122554025,122556721	0.692308
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	119875396	119875430	119875413	+	RAMPAGE_only	3	3	10	0.321041	2.947703	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	27613416	27613442	27613441	+	High_confidence	5	6	24	0.770498	4.186704	chr14	27612881	27613894	LTR|ERV1|MER4B-int	+	chr14	27612610	27639636	LINC00645|ENST00000557399.1	+	27612610,27613420,27619822,27634243,27636419	27612677,27613496,27619873,27634344,27639636	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	56157351	56157459	56157358	+	High_confidence	36	45	412	13.226879	5.872520	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.878641
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	189571723	189571733	189571723	-	RAMPAGE_only	3	3	6	0.192624	2.584963	chr2	189571695	189571755	LINE|CR1|L3	+	chr2	189560589	189580811	SLC40A1|NM_014585.5	-	189560589,189563583,189565353,189571714,189572845,189575160,189579812,189580417	189562191,189564225,189565599,189571841,189572961,189575320,189579880,189580811	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	95602505	95602506	95602505	-	RAMPAGE_only	4	6	6	0.192624	2.584963	chr13	95602160	95602511	LINE|L2|L2c	+	chr13	95581969	95644666	MSTRG.7751.5	-	95581969,95584735,95586005,95587538,95589153,95589802,95590278,95593943,95599364,95609456,95611444,95612036,95619884,95622342,95624767,95629988,95633233,95641294,95641993,95643042,95643600,95644376	95582313,95584910,95586136,95587729,95589207,95589932,95590441,95594086,95606059,95609513,95611493,95612177,95619947,95622480,95624929,95630113,95633321,95641855,95642241,95643257,95643698,95644666	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	106561950	106561951	106561950	-	High_confidence	107	109	115	3.691969	6.310683	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.739130
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	51936181	51936198	51936195	-	RAMPAGE_only	5	5	19	0.609977	3.426367	chr15	51935784	51936413	LTR|ERVL|LTR50	-	chr15	51919072	51930627	AC090971.3|ENST00000557871.1	-	51919072,51921783,51922721,51924039,51925745,51926780,51928206,51929333,51930530	51919145,51921873,51922908,51924177,51925881,51926870,51928291,51929478,51930627	0.684211
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	35311038	35311058	35311057	+	High_confidence	4	4	9	0.288937	3.000000	chr22	35310706	35311148	LINE|L2|L2c	-	chr22	35311061	35323819	TOM1|ENST00000443206.2	+	35311061,35317876,35321958,35323027,35323495,35323767	35311127,35317961,35322037,35323177,35323630,35323819	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	86453386	86453399	86453386	-	High_confidence	7	7	13	0.417353	2.855389	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015268	86453387	MAPK10|ENST00000641657.1	-	86015268,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453387	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	27722333	27722344	27722333	+	High_confidence	11	11	19	0.609977	3.614369	chr21	27721678	27722360	LTR|ERV1|MER50	-	chr21	27722378	27751233	LINC00113|NR_024357.2	+	27722378,27743392,27745817,27751071	27722413,27743504,27746032,27751233	0.526316
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	126070623	126070624	126070623	-	High_confidence	7	7	7	0.224729	2.807355	chr10	126070617	126070770	LINE|CR1|X7A_LINE	-	chr10	126049602	126070633	ADAM12|ENST00000467145.1	-	126049602,126064805,126066716,126070386	126049669,126065001,126066806,126070633	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	100363117	100363163	100363162	+	High_confidence	11	11	21	0.674186	4.084184	chr1	100362798	100363434	LTR|ERV1|LTR9	-	chr1	100363160	100484639	CDC14A|ENST00000646563.1	+	100363160,100377545,100390731,100424221,100439931,100442933,100462650,100467955,100484291	100363225,100377621,100390824,100424301,100439998,100442996,100462881,100468094,100484639	0.523810
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	20674762	20674799	20674762	+	High_confidence	5	6	30	0.963122	4.566109	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	158173024	158173025	158173024	-	High_confidence	30	31	38	1.219955	4.648956	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.868421
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	125895226	125895227	125895226	-	RAMPAGE_only	7	7	8	0.256833	2.807355	chr11	125895047	125895200	SINE|Alu|AluSc8	-	chr11	125893484	125896330	PUS3|ENST00000530811.5	-	125893484,125895223,125895906	125894286,125895789,125896330	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	71379914	71379927	71379926	+	High_confidence	3	3	6	0.192624	2.584963	chr2	71379856	71379996	DNA|TcMar-Tigger|MER44D	+	chr2	71380175	71398757	ZNF638|ENST00000491843.2	+	71380175,71380512,71380837,71396140,71398700	71380280,71380565,71380903,71396191,71398757	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	33130041	33130063	33130062	+	RAMPAGE_only	3	4	12	0.385249	3.084963	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	5295368	5295388	5295368	-	High_confidence	2	2	9	0.288937	2.500000	chr18	5295086	5295338	LINE|L1|L1M4b	-	chr18	5289018	5295702	ZBTB14|NM_001243702.1	-	5289018,5293243,5293971,5295651	5292204,5293327,5294001,5295702	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	53546436	53546445	53546444	-	RAMPAGE_only	4	4	8	0.256833	2.807355	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	2759974	2760038	2759974	+	High_confidence	5	9	38	1.219955	3.013657	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.894737
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	114059117	114059118	114059117	-	High_confidence	32	32	33	1.059434	4.538910	chrX	114059021	114059467	LTR|ERV1|LTR2	-	chrX	113961710	114059289	XACT|ENST00000649506.1	-	113961710,114042367,114059003	113963599,114042484,114059289	0.696970
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	26013336	26013363	26013349	+	RAMPAGE_only	5	5	20	0.642081	3.521928	chr13	26013392	26013701	SINE|Alu|AluSq2	+	chr13	25469020	26020287	ATP8A2|ENST00000255283.9	+	25469020,25529998,25530561,25532271,25533272,25537987,25540318,25541918,25543290,25551337,25553792,25554990,25558972,25559720,25563955,25570766,25571609,25571712,25699167,25769045,25774848,25828117,25837162,25839545,25860194,25860803,25862300,25961574,25968574,26012530,26019887	25469121,25530098,25530660,25532317,25533313,25538061,25540388,25542046,25543402,25551503,25553920,25555068,25559061,25559765,25564031,25570872,25571710,25571776,25699345,25769229,25774959,25828192,25837285,25839624,25860256,25860860,25862408,25961663,25968679,26012622,26020287	0.950000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	121060776	121060777	121060776	+	High_confidence	509	515	556	17.849866	5.658028	chr7	121059787	121061189	LTR|ERV1|LTR12C	+	chr7	121060760	121097815	MSTRG.26081.10	+	121060760,121064237,121097698	121061204,121064313,121097815	0.953237
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	46087007	46087066	46087042	-	High_confidence	10	10	35	1.123643	4.400432	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.885714
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	32446970	32447003	32446977	+	High_confidence	20	21	72	2.311493	5.119248	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.986111
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	62897430	62897431	62897430	+	High_confidence	11	12	14	0.449457	3.664498	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	67571154	67571170	67571154	+	High_confidence	2	2	7	0.224729	2.584963	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	62897365	62897381	62897380	+	High_confidence	3	3	7	0.224729	2.521641	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897375	62899777	LOC728673|NR_126047.1	+	62897375,62897877	62897734,62899777	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	21200761	21200805	21200804	+	High_confidence	11	11	54	1.733620	4.944250	chr6	21200835	21201081	LINE|L1|L1MC3	+	chr6	21200811	21231441	CDKAL1|ENST00000476517.1	+	21200811,21201109,21230847	21200892,21201274,21231441	0.907407
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	135428896	135428916	135428896	-	RAMPAGE_only	7	7	12	0.385249	2.855389	chr6	135428847	135429113	LINE|L2|L2c	-	chr6	135284895	135442685	AHI1|ENST00000475846.6	-	135284895,135286398,135290422,135300499,135301407,135302711,135318518,135323161,135358131,135394775,135404950,135411347,135427166,135428628,135429881,135431207,135433026,135438374,135442581	135285647,135286548,135290525,135300558,135301539,135302817,135318616,135323324,135358187,135394896,135404977,135411544,135427307,135428759,135430000,135431314,135433256,135438498,135442685	0.916667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	106970504	106971359	106970672	-	RAMPAGE_only	27	31	898	28.829459	7.283132	chr6	106970529	106970829	SINE|Alu|AluSx1	+	chr6	106969830	106974039	CD24|NM_001291739.1	-	106969830,106973669	106971834,106974039	0.996659
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	110304839	110304843	110304839	+	High_confidence	19	20	32	1.027330	4.079376	chr13	110304814	110305070	DNA|TcMar-Tigger|Tigger19a	-	chr13	110305811	110424861	COL4A2|ENST00000400163.7	+	110305811,110307859,110308068,110357471,110424733	110305943,110307947,110308123,110357552,110424861	0.906250
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	115647899	115648000	115647987	+	RAMPAGE_only	3	5	34	1.091539	4.653496	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	155343321	155343322	155343321	-	RAMPAGE_only	18	18	21	0.674186	3.746439	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.904762
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	24235834	24235843	24235834	+	RAMPAGE_only	5	5	9	0.288937	2.947703	chr8	24235506	24235953	LTR|ERV1|LTR2	+	chr8	24294039	24359018	ADAM28|ENST00000265769.8	+	24294039,24299973,24309893,24310162,24311360,24313387,24320235,24321217,24323833,24326553,24329984,24331149,24332659,24335445,24339465,24341597,24343100,24343505,24349863,24351231,24351986,24353769,24354383	24294195,24300077,24309970,24310241,24311437,24313580,24320307,24321289,24324003,24326635,24330115,24331327,24332749,24335641,24339568,24341757,24343181,24343584,24349972,24351310,24352052,24353832,24359018	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	44126632	44126652	44126632	+	High_confidence	6	6	11	0.353145	3.459432	chr6	44126578	44126686	LINE|CR1|X7A_LINE	-	chr6	44126913	44155519	TMEM63B|NM_001318792.1	+	44126913,44134560,44135016,44135327,44136348,44138479,44139466,44139707,44140251,44141027,44146846,44147376,44148251,44148512,44148791,44149858,44150223,44150563,44151845,44152592,44153675,44154072,44154364,44154691	44127072,44134743,44135096,44135366,44136439,44138517,44139609,44139759,44140360,44141098,44146927,44147500,44148385,44148650,44148945,44149965,44150310,44150629,44152008,44152698,44153843,44154188,44154445,44155519	0.545455
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	193614811	193614861	193614860	+	High_confidence	8	8	30	0.963122	3.164498	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.900000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	127642418	127642438	127642428	+	High_confidence	51	53	196	6.292399	5.845921	chr9	127642433	127642559	LINE|CR1|L3	+	chr9	127642342	127663258	STXBP1|ENST00000626333.1	+	127642342,127651602,127653714,127658374,127660029,127661101,127663204	127642563,127651652,127653796,127658451,127660108,127661205,127663258	0.780612
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	128098286	128098327	128098326	+	RAMPAGE_only	3	3	7	0.224729	2.521641	chr4	128098347	128098409	LINE|L1|L1MC2	+	chr4	128077840	128122352	LARP1B|ENST00000507377.1	+	128077840,128082164,128091000,128091346,128098185,128107138,128114569,128121825	128077962,128082305,128091144,128091512,128098330,128107313,128114742,128122352	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	93339247	93339292	93339247	-	RAMPAGE_only	4	4	20	0.642081	4.142664	chr1	93339000	93339318	LINE|L2|L2b	+	chr1	93264676	93345783	MSTRG.1364.14	-	93264676,93305387,93309539,93324634,93325768,93337376,93338229,93339356,93339648,93340457,93345723	93264772,93305470,93309790,93324729,93325895,93337512,93339274,93339536,93339679,93340510,93345783	0.950000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	39810033	39810094	39810033	-	High_confidence	57	57	204	6.549231	5.948925	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.568627
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	164839350	164839384	164839350	+	RAMPAGE_only	2	2	9	0.288937	2.947703	chr2	164839310	164839440	SINE|Alu|AluJr	+	chr2	164840671	165094117	AC019197.1|ENST00000638199.1	+	164840671,164848841,164945583,164949934,164959254,164960898,165091119,165091829	164840822,164849402,164945671,164950133,164959329,164960967,165091299,165094117	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	2768837	2768847	2768846	+	High_confidence	3	3	8	0.256833	2.521641	chr6	2768884	2768965	SINE|MIR|MIRc	+	chr6	2768772	2785745	WRNIP1|ENST00000380764.1	+	2768772,2770119,2779262,2783405,2784323,2785006	2768882,2770361,2779492,2783561,2784403,2785745	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	4129116	4129127	4129116	+	RAMPAGE_only	3	4	7	0.224729	2.807355	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	7502490	7502523	7502503	-	High_confidence	3	4	10	0.321041	2.721928	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	107441575	107441593	107441592	-	RAMPAGE_only	4	4	9	0.288937	2.500000	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	9409605	9409615	9409614	-	RAMPAGE_only	34	34	51	1.637308	5.211449	chr5	9409587	9409722	SINE|MIR|MIR1_Amn	+	chr5	9202123	9380201	SEMA5A|ENST00000513968.4	-	9202123,9224673,9226868,9237827,9318371,9337712,9379822,9380106	9202240,9224887,9226967,9237890,9318417,9337812,9380023,9380201	0.764706
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	2663487	2663493	2663492	-	RAMPAGE_only	4	5	8	0.256833	2.521641	chr16	2661287	2668373	LTR|ERVK|HERVK13-int	-	chr16	2660349	2665350	ERVK13-1|ENST00000619862.1	-	2660349	2665350	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	57267761	57267782	57267761	+	RAMPAGE_only	5	5	15	0.481561	3.906891	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.866667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	77723180	77723235	77723180	-	RAMPAGE_only	2	2	16	0.513665	3.906891	chr14	77722838	77723146	SINE|Alu|AluY	-	chr14	77717598	77761154	SNW1|NM_012245.2	-	77717598,77718366,77720710,77723180,77730987,77732484,77734946,77735936,77736970,77738777,77738965,77751318,77754966,77761113	77718286,77718530,77720828,77723277,77731129,77732601,77735012,77736006,77737075,77738884,77739061,77751480,77755120,77761154	0.937500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100834619	100834676	100834675	+	High_confidence	5	5	18	0.577873	2.927451	chr14	100834648	100834738	LINE|L2|L2b	+	chr14	100833763	100861021	MEG3|ENST00000524035.5	+	100833763,100836166,100845457,100860690	100836075,100836300,100845533,100861021	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	5823710	5823735	5823710	+	RAMPAGE_only	7	7	18	0.577873	3.947703	chr4	5823458	5823855	LTR|ERVL-MaLR|MSTB1	+	chr4	5793513	5832302	MSTRG.20889.7	+	5793513,5797021,5798585,5801949,5804729,5808200,5809517,5810338,5810955,5818210	5793717,5797232,5798792,5802094,5804841,5808327,5809611,5810450,5814162,5832302	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	42027500	42027531	42027515	+	RAMPAGE_only	2	2	12	0.385249	3.027169	chr18	42027565	42027649	DNA|hAT-Charlie|MER58B	+	chr18	42025781	42037817	PIK3C3|ENST00000590013.2	+	42025781,42027442,42029324,42033825,42037691	42025939,42027548,42029441,42033957,42037817	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	154928503	154928515	154928503	+	High_confidence	63	63	115	3.691969	6.166021	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.904348
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	76040965	76040983	76040965	+	High_confidence	4	4	13	0.417353	3.026987	chr1	76040919	76040975	LINE|L2|L2a	-	chr1	76041690	76066228	AC092813.2|ENST00000434540.1	+	76041690,76066037	76041898,76066228	0.769231
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	40209314	40209320	40209319	+	High_confidence	9	10	24	0.770498	3.663533	chr2	40208967	40209664	LINE|L2|L2a	-	chr2	40209964	40255058	SLC8A1-AS1|ENST00000427354.5	+	40209964,40251683,40254419	40210024,40251774,40255058	0.708333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	31118997	31119017	31119016	-	High_confidence	3	4	6	0.192624	2.584963	chr12	31118893	31119042	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	24383289	24383304	24383294	-	High_confidence	6	6	26	0.834706	4.623517	chr6	24383044	24383353	SINE|Alu|AluSp	+	chr6	24171754	24383292	DCDC2|NM_001195610.1	-	24171754,24178329,24205001,24278048,24288851,24290931,24301714,24301967,24353568,24357457,24383180	24174834,24178632,24205102,24278211,24288906,24291078,24301846,24302044,24353623,24357847,24383292	0.730769
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	108451086	108451109	108451086	+	RAMPAGE_only	4	4	16	0.513665	3.750000	chr2	108451073	108451151	LINE|RTE-BovB|MamRTE1	-	chr2	108449883	108472899	GCC2|ENST00000409896.1	+	108449883,108451027,108452398,108468979,108469650,108472826	108449994,108451112,108452466,108469084,108472116,108472899	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	20676160	20676162	20676161	-	High_confidence	13	17	25	0.802602	4.563856	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.960000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	6044570	6044647	6044570	-	RAMPAGE_only	4	5	36	1.155747	3.813880	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6041152	6046437	EIF2AK1|ENST00000470168.1	-	6041152,6042932,6044561,6046070	6041219,6042993,6044661,6046437	0.611111
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	80147918	80147930	80147929	+	High_confidence	6	7	16	0.513665	3.773557	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.562500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	138788817	138788818	138788817	+	RAMPAGE_only	7	7	9	0.288937	2.947703	chr7	138788619	138788981	LTR|ERVL-MaLR|THE1B	+	chr7	138797951	138803748	TMEM213|ENST00000397602.7	+	138797951,138801329,138802899	138798186,138801398,138803748	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	131510236	131510330	131510329	-	High_confidence	17	19	85	2.728846	4.902838	chr7	131510213	131510511	SINE|Alu|AluSx3	+	chr7	131509068	131510898	PODXL|ENST00000482581.1	-	131509068,131510827	131509585,131510898	0.717647
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	4355592	4355593	4355592	-	High_confidence	131	131	131	4.205634	4.816429	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.931298
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	52965299	52965303	52965299	-	High_confidence	326	331	584	18.748780	5.028821	chr10	52964418	52966071	LTR|ERV1|MER52A	-	chr10	52946430	52965289	MSTRG.3318.1	-	52946430	52965289	0.986301
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	121062866	121062867	121062866	+	High_confidence	27	27	33	1.059434	4.389557	chr7	121062672	121063032	LTR|ERVL-MaLR|THE1B	+	chr7	121062764	121261918	CPED1|ENST00000423795.5	+	121062764,121064237,121097698,121099925,121124330,121125819,121127089,121128381,121130124,121133822,121136039,121140826,121141972,121236713,121244201,121261631	121062896,121064313,121097831,121100094,121124473,121125892,121127257,121128486,121130294,121133893,121136090,121141013,121142141,121236831,121244338,121261918	0.848485
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	8607999	8608049	8608048	+	RAMPAGE_only	11	11	21	0.674186	4.121928	chr18	8607829	8608179	SINE|Alu|AluJr	+	chr18	8609436	8639381	RAB12|ENST00000649141.1	+	8609436,8624937,8633188,8635532,8636252,8638148	8609953,8624998,8633327,8635622,8636357,8639381	0.761905
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	67886471	67886535	67886517	+	High_confidence	21	21	80	2.568326	5.098499	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.937500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	43881911	43881918	43881911	-	RAMPAGE_only	3	5	9	0.288937	2.750000	chr7	43881785	43881943	LINE|L2|L2	+	chr7	43875912	43889634	URGCP|ENST00000336086.10	-	43875912,43881658,43881906,43887414	43879260,43881697,43881957,43889634	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	135965723	135965773	135965723	+	High_confidence	72	107	562	18.042490	6.305505	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.987544
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	28048446	28048447	28048446	+	High_confidence	15	15	18	0.577873	3.337175	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.944444
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	153686708	153686715	153686714	+	RAMPAGE_only	5	5	9	0.288937	2.750000	chr1	153686764	153686881	SINE|MIR|MIR3	+	chr1	153678687	153693992	NPR1|NM_000906.3	+	153678687,153680500,153681179,153681703,153682497,153683375,153683739,153684963,153685805,153686122,153686645,153687015,153687199,153687633,153688052,153688952,153689187,153689452,153689805,153690283,153693105,153693351	153679829,153680700,153681293,153681839,153682589,153683511,153683824,153685084,153685880,153686200,153686750,153687087,153687356,153687789,153688221,153689099,153689311,153689521,153689980,153690382,153693197,153693992	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	39627120	39627121	39627120	-	High_confidence	14	14	15	0.481561	2.842371	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.866667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	50756547	50756601	50756600	-	RAMPAGE_only	5	5	26	0.834706	4.053661	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.846154
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	37104709	37104795	37104736	-	RAMPAGE_only	4	4	23	0.738394	3.653757	chr2	37104619	37105064	LINE|L1|L1MC4	-	chr2	37099209	37157047	EIF2AK2|ENST00000233057.8	-	37099209,37107473,37109193,37114730,37119958,37122505,37126288,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687,37148856,37156907	37107395,37107527,37109295,37114859,37120139,37122664,37126411,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147822,37149023,37157047	0.913043
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	188153294	188153313	188153312	+	High_confidence	3	3	10	0.321041	2.725481	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	58927664	58927710	58927709	+	High_confidence	9	9	27	0.866810	4.023146	chr11	58927656	58928383	LTR|ERVK|HERVK22-int	-	chr11	58927700	58956405	GLYATL1|ENST00000317391.8	+	58927700,58942539,58943542,58947045,58947857,58954769,58955175,58955609	58927829,58942584,58943666,58947165,58947965,58954896,58955353,58956405	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	22191619	22191644	22191643	+	RAMPAGE_only	2	3	6	0.192624	2.584963	chr6	22191486	22191937	LTR|ERVL-MaLR|MLT1C	-	chr6	22146653	22197219	CASC15|ENST00000606197.1	+	22146653,22173997,22191566,22194044	22147292,22174062,22191656,22197219	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	16712879	16712959	16712889	-	High_confidence	33	37	209	6.709752	6.520337	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.904306
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	65572969	65572994	65572993	+	RAMPAGE_only	3	3	9	0.288937	2.947703	chr10	65572875	65573112	LTR|ERV1|MER61-int	+	chr10	65570535	65585775	LINC01515|ENST00000608678.5	+	65570535,65571424,65572934,65581611,65585484	65570759,65571579,65573056,65581673,65585775	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	5823648	5823674	5823673	+	RAMPAGE_only	3	3	7	0.224729	2.584963	chr4	5823458	5823855	LTR|ERVL-MaLR|MSTB1	+	chr4	5793513	5832302	MSTRG.20889.7	+	5793513,5797021,5798585,5801949,5804729,5808200,5809517,5810338,5810955,5818210	5793717,5797232,5798792,5802094,5804841,5808327,5809611,5810450,5814162,5832302	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	232551066	232551104	232551103	+	High_confidence	15	15	79	2.536222	5.439671	chr2	232551133	232551224	SINE|MIR|MIRb	+	chr2	232550806	232567205	EIF4E2|ENST00000454501.1	+	232550806,232556415,232557883,232564246,232566828,232567077	232551218,232556530,232558018,232564351,232566981,232567205	0.949367
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	997305	997319	997313	-	High_confidence	21	22	87	2.793055	5.249785	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.908046
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	42878206	42878240	42878211	-	RAMPAGE_only	8	8	20	0.642081	3.821928	chr17	42878058	42878260	SINE|Alu|AluSx	+	chr17	42874669	42898704	LINC00671|ENST00000301683.7	-	42874669,42877974,42878526,42894565,42897686,42898632	42874863,42878073,42879818,42894634,42897918,42898704	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	102235458	102235459	102235458	-	High_confidence	6	6	6	0.192624	2.584963	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	57793732	57793744	57793732	+	RAMPAGE_only	5	5	13	0.417353	3.180833	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57781602	57796584	CTNND1|ENST00000530068.5	+	57781602,57791491,57794009,57795576,57796456	57781646,57791673,57794081,57795729,57796584	0.769231
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	109383422	109383463	109383462	-	High_confidence	13	14	38	1.219955	4.426734	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.921053
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	95652193	95652209	95652208	+	RAMPAGE_only	4	4	8	0.256833	2.521641	chr14	95651754	95652375	LTR|ERV1|LTR24C	-	chr14	95651177	95671850	TCL6|ENST00000483087.5	+	95651177,95652376,95654508,95663255,95669550,95670441,95671330,95671676	95652226,95652489,95654626,95663635,95669617,95670577,95671487,95671850	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	132345036	132345047	132345046	+	RAMPAGE_only	7	9	12	0.385249	2.913977	chr3	132345072	132345309	SINE|MIR|MIR	+	chr3	132352801	132358720	ACPP|ENST00000507647.1	+	132352801,132356685,132358416	132352823,132356855,132358720	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	96064335	96064357	96064356	-	High_confidence	2	2	6	0.192624	2.584963	chr15	96064023	96064542	LTR|ERVL|MER77	-	chr15	96045340	96064357	AC024337.1|ENST00000648034.1	-	96045340,96046788,96048533,96062683,96064276	96045552,96046895,96049695,96062756,96064357	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	151806645	151806699	151806689	+	High_confidence	5	5	26	0.834706	4.334963	chr7	151806685	151806943	SINE|Alu|AluSz6	+	chr7	151806489	151810820	AC093583.1|ENST00000462083.3	+	151806489,151807371,151809248	151807036,151807635,151810820	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	58724424	58724506	58724467	-	High_confidence	6	7	45	1.444683	4.879664	chr11	58724345	58724536	LINE|CR1|L3	-	chr11	58708757	58724496	GLYAT|ENST00000611865.4	-	58708757,58710589,58712759,58715315,58724415	58710168,58710761,58712886,58715423,58724496	0.644444
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	16951007	16951023	16951007	+	RAMPAGE_only	6	6	16	0.513665	3.373557	chr1	16950976	16951061	DNA|hAT-Ac|OldhAT1	+	chr1	16953156	16954781	CROCC|ENST00000497654.2	+	16953156,16954222,16954733	16953481,16954357,16954781	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	174410019	174410040	174410019	+	High_confidence	3	3	9	0.288937	3.169925	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410081	174427895	SCRN3|ENST00000549848.5	+	174410081,174422884,174424474,174427712	174410503,174423047,174424649,174427895	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	186674200	186674224	186674200	-	RAMPAGE_only	2	3	11	0.353145	3.121928	chr4	186674131	186674246	SINE|MIR|MIRb	-	chr4	186587782	186723833	FAT1|NM_005245.3	-	186587782,186595688,186596539,186597681,186597971,186599897,186601268,186602902,186603175,186604376,186606069,186609182,186609800,186611385,186613108,186614190,186617004,186617707,186628153,186628487,186633683,186636024,186636584,186639721,186663298,186706562,186723663	186589220,186595826,186597171,186597792,186598125,186600360,186601426,186603034,186603977,186604574,186606213,186609320,186610015,186611775,186613342,186614344,186617201,186621775,186628364,186628763,186633823,186636235,186636914,186639783,186663613,186709845,186723833	0.818182
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	72286159	72286165	72286159	+	RAMPAGE_only	11	15	27	0.866810	4.209867	chr12	72285976	72286216	SINE|MIR|MIRb	-	chr12	72274508	72309763	TRHDE|ENST00000552503.1	+	72274508,72286680,72303164,72306661,72309700	72274586,72286954,72303240,72306744,72309763	0.814815
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	139526237	139526238	139526237	+	High_confidence	127	132	161	5.168756	5.375938	chr5	139525865	139526346	LTR|ERV1|LTR2B	+	chr5	139526430	139626855	UBE2D2|ENST00000511725.5	+	139526430,139600371,139614585,139614696,139614860,139623367,139626755	139526612,139600435,139614617,139614774,139614966,139623461,139626855	0.639752
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	39120484	39120495	39120489	-	RAMPAGE_only	2	3	8	0.256833	2.521641	chr5	39120429	39120630	DNA|hAT-Charlie|MER5B	-	chr5	39107057	39124317	FYB1|ENST00000647313.1	-	39107057,39108230,39110355,39118873,39119534,39122335,39124252	39107465,39108262,39110389,39119036,39119634,39122402,39124317	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	32441959	32441961	32441960	+	RAMPAGE_only	14	19	24	0.770498	4.142915	chr11	32441907	32442062	SINE|MIR|MIR	+	chr11	32435578	32457710	MSTRG.4474.2	+	32435578,32437844,32452020	32435846,32447874,32457710	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	54172733	54172734	54172733	-	RAMPAGE_only	7	7	9	0.288937	2.750000	chr1	54172537	54172738	LINE|L2|L2b	+	chr1	54138994	54153770	CDCP2|ENST00000371330.1	-	54138994,54141097,54144465,54152843	54140106,54141433,54144813,54153770	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	69841530	69841550	69841530	-	RAMPAGE_only	5	5	19	0.609977	3.572431	chr4	69841433	69841617	SINE|Alu|AluJo	+	chr4	69821283	69859889	MSTRG.21281.3	-	69821283,69838447,69844160,69847697,69849436,69855300,69857499	69832406,69842106,69844341,69847792,69854314,69855426,69859889	0.842105
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	146788264	146788288	146788287	+	RAMPAGE_only	6	6	18	0.577873	3.807764	chr6	146788237	146788400	DNA|TcMar-Tigger|Tigger9a	+	chr6	146770438	146801254	ADGB|ENST00000326916.12	+	146770438,146782019,146784617,146785609,146788388,146801182	146770609,146782192,146784794,146785712,146788610,146801254	0.722222
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	147382877	147382900	147382899	+	High_confidence	7	7	24	0.770498	3.495237	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.791667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	158815094	158815109	158815094	-	RAMPAGE_only	1	1	7	0.224729	2.584963	chr7	158815020	158815119	SINE|MIR|MIRb	+	chr7	158733610	158829472	ESYT2|ENST00000275418.11	-	158733610,158734421,158735502,158737047,158739022,158741522,158743528,158748193,158749648,158752780,158759485,158760057,158761495,158763082,158764676,158767653,158773340,158788003,158788344,158793649,158797941,158799030,158829088	158734252,158734471,158735608,158737179,158739121,158741896,158743678,158748280,158749723,158752843,158759581,158760147,158761544,158763165,158764853,158767774,158773396,158788093,158788417,158793726,158798076,158799072,158829472	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	12283369	12283390	12283369	+	High_confidence	1	1	6	0.192624	2.584963	chr1	12283362	12283402	LINE|L2|L2	+	chr1	12283434	12373788	VPS13D|ENST00000646917.1	+	12283434,12288222,12290997,12293523,12299201,12304505,12308430,12311453,12311812,12314114,12318071,12319496,12321808,12322535,12323705,12327647,12329828,12333225,12335704,12338230,12341782,12342898,12345373,12346604,12348822,12349163,12353973,12355898,12356397,12362719,12363071,12368467,12369466,12373749	12283736,12288313,12291124,12293704,12299384,12304728,12308641,12311625,12311925,12314327,12318337,12319630,12321964,12322746,12323780,12327854,12329918,12333366,12335827,12338305,12341885,12343051,12345509,12346652,12348973,12349374,12354221,12356090,12356524,12362850,12363247,12368591,12369702,12373788	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	96638058	96638060	96638058	-	High_confidence	3	6	9	0.288937	2.947703	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96631337	96638060	KANSL3|ENST00000475820.1	-	96631337,96636920,96637948	96631543,96637185,96638060	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	57616046	57616073	57616072	+	RAMPAGE_only	2	2	8	0.256833	2.521641	chr17	57616113	57616256	SINE|MIR|MIRb	+	chr17	57596902	57680297	MSTRG.12784.17	+	57596902,57615969,57627228,57652098,57674971,57676986	57596950,57616084,57627303,57652161,57675126,57680297	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	201115977	201116024	201116023	+	High_confidence	4	5	18	0.577873	3.410417	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	53029930	53029953	53029930	-	High_confidence	7	7	26	0.834706	4.238901	chr10	53026354	53029943	LTR|ERV1|HERV30-int	-	chr10	53025313	53030124	MSTRG.3321.2	-	53025313,53029891	53026127,53030124	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	240022172	240022237	240022172	-	RAMPAGE_only	14	14	60	1.926244	3.888136	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.966667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	1585100	1585120	1585100	-	RAMPAGE_only	2	2	11	0.353145	3.459432	chr5	1584920	1585091	LTR|ERVK|HERVK9-int	-	chr5	1571842	1594620	MSTRG.22055.1	-	1571842,1576178,1593112,1594394	1574295,1589365,1593284,1594620	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	18063185	18063207	18063197	-	High_confidence	8	8	26	0.834706	4.056021	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	45442058	45442097	45442096	-	High_confidence	3	4	10	0.321041	2.947703	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45430651	45441808	AC025580.1|ENST00000559553.1	-	45430651,45433612,45441780	45430814,45434150,45441808	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	96451509	96451525	96451524	+	RAMPAGE_only	3	3	9	0.288937	2.750000	chr14	96451524	96451593	LINE|RTE-BovB|MamRTE1	+	chr14	96392110	96489427	AK7|ENST00000267584.8	+	96392110,96398074,96404756,96408846,96420821,96437834,96442729,96446516,96449801,96451420,96456346,96458082,96471477,96472686,96478464,96482998,96486897,96488304	96392259,96398263,96404865,96408941,96420932,96437915,96442818,96446607,96449879,96451570,96456475,96458212,96471606,96472755,96478662,96483219,96487056,96489427	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	106457218	106457234	106457233	-	High_confidence	6	6	18	0.577873	3.263933	chr6	106457073	106457514	LTR|ERVL-MaLR|MSTC	-	chr6	106451495	106457248	AL109920.1|ENST00000632749.1	-	106451495,106457153	106451815,106457248	0.944444
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	139364647	139364648	139364647	+	RAMPAGE_only	6	6	9	0.288937	2.750000	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	3536480	3536515	3536496	-	High_confidence	2	3	8	0.256833	2.807355	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	74198236	74198342	74198236	-	RAMPAGE_only	6	6	36	1.155747	4.653496	chrX	74196376	74198555	LINE|L1|L1MA9	-	chrX	74196350	74293574	FTX|ENST00000603037.2	-	74196350,74247331,74274341,74280393,74280930,74281701,74293351	74203909,74247424,74274410,74280494,74281085,74281848,74293574	0.944444
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	3795750	3795789	3795788	+	High_confidence	13	14	84	2.696742	5.658054	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.988095
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	82164525	82164526	82164525	+	RAMPAGE_only	42	42	56	1.797828	5.593069	chr10	82164219	82164583	LINE|L1|L1MA4A	-	chr10	81877960	82985605	NRG3|ENST00000556918.5	+	81877960,82166726,82232741,82358738,82738576,82865410,82951468,82958948,82973787,82978949,82985097	81878095,82166826,82232819,82358868,82738650,82865437,82951571,82959075,82973915,82979120,82985605	0.517857
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	38784128	38784173	38784128	+	RAMPAGE_only	4	4	14	0.449457	3.546594	chr13	38784107	38784278	SINE|MIR|MIRb	+	chr13	38687128	38887131	FREM2|ENST00000280481.8	+	38687128,38697697,38764303,38769577,38783069,38784556,38846572,38848460,38850037,38850943,38851685,38856125,38857874,38859286,38861430,38864274,38872741,38874481,38876021,38876247,38877116,38878133,38878830,38880283	38692517,38697787,38764450,38769808,38783195,38784808,38846722,38848670,38850235,38851108,38851868,38856256,38858033,38859590,38861562,38864606,38872934,38874586,38876149,38876382,38877243,38878321,38878977,38887131	0.642857
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	129559620	129559640	129559620	-	High_confidence	8	8	20	0.642081	4.142664	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	0.850000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	24491465	24491470	24491465	+	RAMPAGE_only	3	3	7	0.224729	2.584963	chr15	24490975	24491495	LINE|L1|L1MC3	-	chr15	24493136	24513144	PWRN1|ENST00000565893.1	+	24493136,24507338,24507953,24508860,24512979	24493328,24507478,24508140,24508994,24513144	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	170267243	170267260	170267249	-	High_confidence	2	3	12	0.385249	3.095795	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.916667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	131121451	131121785	131121451	+	RAMPAGE_only	24	24	340	10.915385	6.083952	chr9	131121449	131121629	SINE|MIR|MIR3	-	chr9	131096555	131123145	MSTRG.28730.6	+	131096555,131111596,131114576,131117755,131120234	131096863,131111663,131114618,131117918,131123145	0.994118
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	44023214	44023215	44023214	-	RAMPAGE_only	5	5	7	0.224729	2.521641	chr17	44022830	44023425	LTR|ERVL|LTR66	-	chr17	44011187	44019447	TMEM101|NM_001304814.1	-	44011187,44013008,44014356,44014983,44019237	44012236,44013155,44014537,44015155,44019447	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	16402009	16402010	16402009	-	RAMPAGE_only	12	13	17	0.545769	3.969816	chr6	16401830	16402189	LTR|ERVL-MaLR|THE1B	-	chr6	16299111	16761456	ATXN1|ENST00000244769.8	-	16299111,16326393,16485971,16522626,16585779,16657775,16753232,16754042,16761297	16306859,16328470,16486109,16522688,16585907,16657901,16753347,16754091,16761456	0.764706
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	38291651	38291700	38291690	+	RAMPAGE_only	4	4	26	0.834706	4.373661	chr21	38291635	38291815	DNA|hAT-Charlie|MER5A	+	chr21	38296556	38299731	KCNJ15|ENST00000398927.1	+	38296556,38296925,38299243	38296635,38297023,38299731	0.846154
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	131503965	131504113	131504040	-	RAMPAGE_only	62	85	341	10.947489	4.943378	chr7	131503890	131504051	SINE|MIR|MIR3	+	chr7	131500261	131556563	PODXL|ENST00000446198.5	-	131500261,131505867,131506259,131506578,131508950,131510827,131556259	131504508,131506035,131506321,131506726,131509585,131511433,131556563	0.997067
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	940005	940014	940005	+	High_confidence	3	5	9	0.288937	2.750000	chr11	939951	940252	SINE|Alu|AluSz	-	chr11	940734	972216	AP2A2|ENST00000527024.1	+	940734,959436,970168,972061	940894,959505,970311,972216	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	93339055	93339067	93339055	-	RAMPAGE_only	10	10	18	0.577873	3.969816	chr1	93339000	93339318	LINE|L2|L2b	+	chr1	93264676	93345783	MSTRG.1364.14	-	93264676,93305387,93309539,93324634,93325768,93337376,93338229,93339356,93339648,93340457,93345723	93264772,93305470,93309790,93324729,93325895,93337512,93339274,93339536,93339679,93340510,93345783	0.944444
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	95652148	95652161	95652148	+	High_confidence	3	3	10	0.321041	2.725481	chr14	95651754	95652375	LTR|ERV1|LTR24C	-	chr14	95651177	95671850	TCL6|ENST00000483087.5	+	95651177,95652376,95654508,95663255,95669550,95670441,95671330,95671676	95652226,95652489,95654626,95663635,95669617,95670577,95671487,95671850	0.600000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	104926544	104926627	104926544	-	High_confidence	752	771	2434	78.141318	7.999794	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104911915	104926630	MSTRG.25982.3	-	104911915,104915705,104917559,104919476,104920384,104926452	104912165,104915827,104917980,104919594,104920425,104926630	0.605588
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	17676701	17676702	17676701	-	RAMPAGE_only	11	11	12	0.385249	2.663533	chr21	17676549	17677516	LTR|ERVK|LTR13A	-	chr21	17659275	17660384	AP000432.1|ENST00000416641.1	-	17659275,17660262	17659669,17660384	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	127330917	127330952	127330917	-	High_confidence	2	2	10	0.321041	3.121928	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	2242922	2242923	2242922	+	High_confidence	18	18	19	0.609977	3.725481	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.894737
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	32077630	32077662	32077661	-	High_confidence	3	3	10	0.321041	2.921928	chr3	32077310	32077987	LTR|ERV1|MER50B	+	chr3	31876432	32077580	OSBPL10|ENST00000479173.1	-	31876432,31879654,32046490,32077395	31876512,31879830,32046603,32077580	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	132402846	132402872	132402846	-	High_confidence	3	3	8	0.256833	2.500000	chr6	132402717	132402895	LTR|Gypsy?|LTR88c	+	chr6	132296068	132403037	MSTRG.24691.3	-	132296068,132297786,132315634,132320628,132322678,132323930,132328012,132328414,132372607,132372829,132374630,132401162,132401904,132402647	132297317,132297955,132315777,132320688,132322870,132324097,132328115,132328594,132372691,132372997,132374777,132401466,132402079,132403037	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	102930112	102930183	102930138	+	High_confidence	10	10	73	2.343597	5.411186	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.849315
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	51350352	51350373	51350372	-	RAMPAGE_only	7	7	21	0.674186	3.471354	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.904762
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73841834	73841877	73841876	-	High_confidence	41	41	125	4.013009	5.328981	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.936000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	113873326	113873357	113873346	-	High_confidence	15	17	70	2.247285	5.291723	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.842857
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	38948205	38948246	38948236	-	High_confidence	18	19	57	1.829932	5.209912	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38838888	38948237	LINC00639|ENST00000556116.1	-	38838888,38941519,38948177	38839204,38941695,38948237	0.842105
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	28985661	28985694	28985685	+	High_confidence	4	4	23	0.738394	3.916127	chr6	28985713	28985796	SINE|Alu|AluJo	+	chr6	28986202	28987484	HCG15|ENST00000438190.1	+	28986202,28986312,28986676	28986232,28986506,28987484	0.565217
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	150433729	150433757	150433729	+	High_confidence	7	7	16	0.513665	3.875000	chr7	150433631	150433743	LINE|CR1|CR1_Mam	-	chr7	150433653	150448140	LINC00996|NR_034033.1	+	150433653,150442548,150446699,150447075	150433829,150443160,150446889,150448140	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	39296738	39296778	39296738	-	RAMPAGE_only	5	5	16	0.513665	3.640224	chr21	39296559	39296777	SINE|MIR|MIRc	-	chr21	39190218	39313570	BRWD1|ENST00000342449.7	-	39190218,39198762,39200218,39202324,39206107,39209994,39210785,39212665,39213480,39215236,39218151,39218504,39224407,39225085,39228499,39229311,39232176,39232372,39236594,39238478,39247700,39250795,39255644,39258486,39264459,39264890,39269898,39270282,39274373,39276172,39277250,39278742,39280147,39293810,39295742,39296264,39298431,39312840,39313071,39313240,39313442	39197415,39199662,39200386,39202545,39206274,39210147,39210929,39212707,39213553,39215362,39218272,39218660,39224469,39225197,39228582,39229436,39232284,39232498,39236784,39238573,39247832,39250889,39255828,39258672,39264685,39265019,39270033,39270433,39274472,39276213,39277351,39278813,39280248,39294032,39295903,39296363,39298582,39312900,39313101,39313299,39313570	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	129493040	129493058	129493057	-	RAMPAGE_only	3	3	6	0.192624	2.584963	chrX	129492703	129493323	LINE|L1|L1ME4a	+	chrX	129446845	129523405	SMARCA1|ENST00000371121.4	-	129446845,129448332,129465519,129465843,129468772,129471203,129480700,129481074,129487017,129488936,129490059,129491940,129493039,129496749,129497844,129499731,129504733,129506079,129507940,129511803,129515686,129515893,129516330,129518360,129523196	129447233,129448443,129465732,129465962,129468905,129471326,129480814,129481185,129487137,129489085,129490192,129492093,129493075,129496871,129498071,129499841,129504802,129506211,129508096,129511983,129515787,129515994,129516497,129518447,129523405	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	68307085	68307144	68307107	-	High_confidence	32	33	142	4.558779	4.372368	chr10	68307029	68307329	SINE|Alu|AluSx1	-	chr10	68287026	68306879	PBLD|ENST00000277795.8	-	68287026,68292009,68292128,68296885,68306760	68289019,68292039,68292238,68296985,68306879	0.887324
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	10825148	10825212	10825211	+	RAMPAGE_only	6	7	24	0.770498	4.084963	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	0.916667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	54235513	54235566	54235562	-	RAMPAGE_only	8	9	31	0.995226	4.014860	chr12	54235340	54235626	SINE|Alu|AluY	+	chr12	54230945	54259545	CBX5|NM_001127322.1	-	54230945,54246114,54252040,54257513,54259269	54241905,54246215,54252227,54257692,54259545	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	112459064	112459065	112459064	+	RAMPAGE_only	9	9	13	0.417353	3.022055	chr1	112458861	112459174	DNA|hAT-Charlie|MER102b	-	chr1	112396180	112461164	CTTNBP2NL|ENST00000271277.10	+	112396180,112412193,112416156,112448941,112454448,112455930	112396272,112412317,112416264,112449172,112454556,112461164	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	136625270	136625305	136625270	-	RAMPAGE_only	125	126	194	6.228190	6.201087	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.871134
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	72627739	72627766	72627739	-	RAMPAGE_only	4	4	13	0.417353	3.392747	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.615385
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	58728021	58728022	58728021	-	High_confidence	8	8	8	0.256833	2.750000	chr11	58727626	58728053	LTR|ERV1|MER50	+	chr11	58709667	58728729	GLYAT|ENST00000529732.5	-	58709667,58710589,58712759,58715315,58724415,58728663	58710168,58710761,58712886,58715423,58724511,58728729	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	10710653	10710654	10710653	-	High_confidence	7	7	7	0.224729	2.807355	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	65382641	65382646	65382645	-	High_confidence	10	10	20	0.642081	4.037401	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.950000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	58578123	58578239	58578132	-	High_confidence	11	20	108	3.467240	5.751044	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.620370
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	151436701	151436733	151436701	-	High_confidence	5	5	25	0.802602	4.483856	chr6	151436689	151436932	LINE|CR1|L3	+	chr6	151423525	151436826	RMND1|ENST00000643550.1	-	151423525,151427481,151430137,151433154,151436419	151423631,151427582,151430177,151433230,151436826	0.880000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	84368667	84368699	84368698	-	High_confidence	4	4	11	0.353145	3.095795	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.545455
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	129583991	129584014	129583991	-	RAMPAGE_only	2	2	8	0.256833	2.750000	chr6	129583973	129584076	LINE|RTE-BovB|MamRTE1	-	chr6	129576131	129710225	ARHGAP18|ENST00000368149.2	-	129576131,129580069,129583987,129599215,129600641,129605876,129607892,129611532,129616211,129618686,129629352,129634041,129638393,129641815,129710023	129578604,129580131,129584112,129599356,129600848,129605959,129608052,129611610,129616303,129618852,129629522,129634105,129638629,129642018,129710225	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	58943649	58943665	58943649	+	High_confidence	17	17	41	1.316267	4.208069	chr11	58943541	58944242	LTR|ERV1|MER57-int	+	chr11	58943370	58955334	GLYATL1|ENST00000524881.5	+	58943370,58943542,58947045,58947857,58954769,58955175	58943460,58943666,58947165,58947965,58954896,58955334	0.829268
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	66690102	66690116	66690102	+	RAMPAGE_only	5	6	14	0.449457	3.392747	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66738030	66788705	MAST4|ENST00000478569.1	+	66738030,66759708,66783334,66788669	66738257,66759862,66783384,66788705	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	95872042	95872068	95872042	-	High_confidence	2	2	11	0.353145	3.277613	chr15	95871988	95872367	LTR|ERV1|LTR12B	-	chr15	95847448	95872189	MSTRG.10086.1	-	95847448,95871988	95867013,95872189	0.545455
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	36914653	36914687	36914686	+	RAMPAGE_only	4	4	8	0.256833	3.000000	chr6	36914707	36914996	SINE|Alu|AluSz6	+	chr6	36885863	36928964	C6orf89|NM_152734.3	+	36885863,36899425,36902220,36914283,36914553,36916444,36919577,36923346	36886028,36899633,36902434,36914435,36914693,36916574,36919701,36928964	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	27889190	27889222	27889221	-	RAMPAGE_only	3	3	8	0.256833	3.000000	chr17	27888753	27889272	LINE|CR1|L3	-	chr17	27878313	27892321	LYRM9|ENST00000379103.7	-	27878313,27880273,27882568,27882938,27892242	27879490,27880366,27882712,27883130,27892321	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	94117898	94117918	94117903	-	High_confidence	11	17	44	1.412579	3.739319	chr1	94117860	94117993	DNA|hAT-Blackjack|MER94	+	chr1	93992946	94118108	MSTRG.1372.3	-	93992946,93996108,93997860,94000835,94001001,94001857,94005440,94007633,94008234,94008750,94010799,94011261,94014542,94015738,94019581,94021239,94021639,94021845,94023385,94024953,94029444,94030427,94030995,94031777,94036739,94037144,94040042,94041208,94042760,94043335,94044612,94046918,94048867,94051632,94055110,94056600,94060536,94062576,94063111,94077689,94078589,94079321,94080477,94083351,94098793,94103014,94108576,94111437,94112972,94117853	93993242,93996195,93998110,94000928,94001105,94001992,94005582,94007740,94008297,94008871,94010929,94011385,94014690,94015854,94019759,94021409,94021714,94021951,94023418,94025048,94029631,94030526,94031120,94032043,94036788,94037350,94040127,94041402,94042898,94043475,94044744,94047093,94048957,94051698,94055315,94056822,94060759,94062753,94063317,94077887,94078706,94079461,94080718,94083441,94098991,94103142,94108716,94111579,94113066,94118108	0.931818
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	65024351	65024368	65024367	-	High_confidence	4	6	10	0.321041	3.169925	chr4	65024156	65024597	LTR|ERVL-MaLR|MSTB1	-	chr4	64914280	65024485	LINC02232|ENST00000509932.2	-	64914280,64926591,64937606,64939272,64939955,64977488,65004402,65008781,65024236	64917643,64926661,64937839,64939365,64940036,64977629,65004501,65008912,65024485	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	188153195	188153225	188153195	+	High_confidence	4	4	10	0.321041	3.121928	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	7147267	7147288	7147267	+	High_confidence	4	5	11	0.353145	3.459432	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	184568398	184568409	184568408	+	High_confidence	6	6	16	0.513665	3.456565	chr1	184568204	184568449	LINE|L1|L1MB3	-	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	121313932	121314021	121314020	+	RAMPAGE_only	8	8	36	1.155747	3.991970	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.972222
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	57641657	57641676	57641657	+	High_confidence	2	2	8	0.256833	2.521641	chr16	57641565	57641864	SINE|Alu|AluSz6	-	chr16	57640964	57651468	ADGRG1|ENST00000563414.5	+	57640964,57641590,57650252,57651199	57641064,57641708,57650351,57651468	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	77745429	77745430	77745429	-	High_confidence	7	7	8	0.256833	2.807355	chr1	77744859	77745606	LINE|L1|L1P1	-	chr1	77695990	77745462	USP33|ENST00000357428.5	-	77695990,77697862,77701368,77711746,77713199,77714613,77715741,77717866,77718595,77721171,77721830,77722023,77723330,77725621,77728294,77729859,77730617,77734346,77736055,77739264,77740876,77741375,77741616,77745420	77697474,77697931,77701471,77711855,77713281,77714783,77715868,77718047,77718641,77721205,77721925,77722196,77723443,77725762,77728712,77729938,77730731,77734416,77736158,77739417,77740939,77741429,77741748,77745462	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	176162895	176162938	176162895	-	RAMPAGE_only	4	5	25	0.802602	4.175736	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.760000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	1721622	1721637	1721636	-	High_confidence	8	9	17	0.545769	3.875000	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.823529
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	76797567	76797568	76797567	-	High_confidence	7	9	10	0.321041	2.947703	chr15	76797305	76798069	LINE|L1|L1M4	+	chr15	76774931	76797543	SCAPER|ENST00000562890.1	-	76774931,76795279,76797219	76775117,76795440,76797543	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	34998724	34998725	34998724	+	RAMPAGE_only	186	188	194	6.228190	6.527596	chr6	34998360	34998835	LTR|ERV1|LTR2B	+	chr6	34889313	35091413	MSTRG.24029.3	+	34889313,34967238,34970009,34981689,34982751,34983112,34983323,34985081,34989223,34994301,35017472,35054098,35060146,35078557,35079515,35079820,35080993,35082690,35083154,35083416,35084120,35085765,35086951,35088605	34889599,34967319,34970166,34981986,34982827,34983214,34983425,34985278,34989316,34999101,35018059,35054165,35060253,35078656,35079668,35079928,35081158,35082816,35083226,35083503,35084258,35085936,35087049,35091413	0.706186
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	114624988	114625034	114624988	-	High_confidence	8	8	34	1.091539	4.366681	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.764706
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	40321701	40321712	40321711	-	RAMPAGE_only	3	4	8	0.256833	2.807355	chr2	40321470	40321842	LTR|ERVL-MaLR|THE1C	-	chr2	40302607	40453438	MSTRG.15802.11	-	40302607,40389906,40416899,40453160	40389792,40416807,40430304,40453438	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	64242601	64242620	64242619	+	High_confidence	16	17	39	1.252059	4.702565	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	177394185	177394191	177394185	+	RAMPAGE_only	2	2	7	0.224729	2.584963	chr5	177394193	177394333	SINE|MIR|MIR1_Amn	+	chr5	177389646	177398840	SLC34A1|ENST00000513614.1	+	177389646,177393693,177396732,177396949	177390484,177393763,177396849,177398840	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	1721675	1721702	1721675	-	High_confidence	3	3	12	0.385249	3.459432	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	124993817	124993860	124993817	+	RAMPAGE_only	14	15	34	1.091539	3.050044	chr6	124993503	124993820	LINE|L2|L2c	-	chr6	124983367	125083515	RNF217|ENST00000359704.2	+	124983367,124996574,125009173,125045210,125057941,125076656,125081435,125082448,125082863	124983521,124996655,125009282,125045444,125058106,125076858,125081507,125082563,125083515	0.852941
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	30354679	30354680	30354679	-	High_confidence	4	4	7	0.224729	2.584963	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	2205814	2205868	2205850	+	High_confidence	29	30	140	4.494570	5.179129	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.978571
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	149742408	149742417	149742408	-	RAMPAGE_only	2	2	7	0.224729	2.584963	chr6	149742325	149742377	SINE|Alu|AluSx	-	chr6	149726767	149746528	NUP43|ENST00000367404.8	-	149726767,149731612,149742389,149743637,149745939,149746375	149727198,149731735,149742570,149743715,149746062,149746528	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	159382560	159382573	159382560	-	RAMPAGE_only	4	4	10	0.321041	3.321928	chr2	159382314	159382523	SINE|MIR|MIRb	-	chr2	159336959	159400650	MSTRG.16699.6	-	159336959,159337461,159347485,159348677,159349006,159349707,159373044,159374690,159382558,159383605,159385154,159386352,159389344,159395768,159398828,159400598	159337077,159337772,159347646,159348833,159349280,159350357,159373189,159374753,159382802,159383680,159385369,159386607,159389485,159397389,159398894,159400650	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	25148942	25148945	25148942	-	High_confidence	8	9	13	0.417353	3.546594	chr16	25148832	25149129	LTR|ERV1|LTR35	-	chr16	25140570	25149032	LCMT1-AS2|NR_039998.1	-	25140570,25146247,25148705	25140858,25148239,25149032	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	79598147	79598153	79598152	-	High_confidence	7	7	15	0.481561	3.378783	chr12	79597796	79598259	LTR|ERVL-MaLR|MLT1F	-	chr12	79574978	79597982	PAWR|ENST00000548075.5	-	79574978,79592610,79594328,79596510,79597815	79575067,79592693,79594433,79596658,79597982	0.733333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	113377472	113377474	113377472	-	High_confidence	8	12	17	0.545769	4.000000	chr9	113377423	113377537	SINE|MIR|MIR3	+	chr9	113373415	113377009	HDHD3|NM_001304510.1	-	113373415,113375452,113376728	113374529,113375526,113377009	0.529412
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	45645874	45645955	45645902	+	High_confidence	6	9	45	1.444683	4.639308	chr15	45645871	45646155	DNA|hAT-Tip100|Arthur1C	+	chr15	45645880	45669946	SQOR|ENST00000561493.5	+	45645880,45658906,45661954,45669927	45646008,45659157,45662125,45669946	0.711111
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	92928419	92928420	92928419	+	High_confidence	9	10	10	0.321041	2.921928	chr10	92928456	92928528	LINE|L2|L2a	+	chr10	92928373	93058524	EXOC6|ENST00000495132.5	+	92928373,92934143,92934309,92935813,92940726,92948273,92952272,92954629,92955579,92974052,92997473,92999249,93014193,93056923,93058222	92928422,92934190,92934430,92935885,92940824,92948379,92952382,92954741,92955714,92974232,92997615,92999387,93014267,93057036,93058524	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	13419720	13419730	13419729	-	RAMPAGE_only	6	7	11	0.353145	2.646439	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	51403425	51403433	51403432	-	RAMPAGE_only	10	10	27	0.866810	3.777363	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.814815
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	75879111	75879162	75879161	+	RAMPAGE_only	6	8	25	0.802602	3.863465	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75868950	75899577	UBE2Q2|ENST00000567921.1	+	75868950,75873427,75883365,75896994,75899426	75869010,75873568,75883424,75897061,75899577	0.680000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	34369447	34369458	34369447	+	RAMPAGE_only	3	3	7	0.224729	2.521641	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	68882879	68882906	68882879	-	High_confidence	5	9	19	0.609977	3.826875	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.894737
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	96155344	96155372	96155371	+	High_confidence	2	2	7	0.224729	2.807355	chr10	96155215	96155402	SINE|MIR|MIRc	-	chr10	96155342	96163761	ZNF518A|ENST00000534948.2	+	96155342,96156196	96156047,96163761	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	86482616	86482671	86482616	+	RAMPAGE_only	6	6	37	1.187851	4.402991	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.864865
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	13071184	13071202	13071184	+	RAMPAGE_only	2	2	8	0.256833	2.750000	chr18	13071233	13071877	LINE|RTE-X|L4_A_Mam	+	chr18	13073115	13125036	CEP192|ENST00000540847.6	+	13073115,13087016,13087530,13088753,13089455,13092376,13095502,13096183,13099475,13100304,13103508,13104983,13113585,13114129,13116376,13117584,13124631	13073185,13087277,13087646,13088904,13089565,13092527,13095681,13096307,13099581,13100512,13103588,13105079,13113705,13114251,13116503,13117643,13125036	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	30499151	30499160	30499151	+	RAMPAGE_only	14	17	43	1.380475	4.765312	chr8	30499143	30499268	SINE|Alu|AluSx	+	chr8	30479329	30547517	RBPMS|ENST00000522694.1	+	30479329,30504285,30544493,30545163,30547291	30479377,30504436,30544624,30545220,30547517	0.627907
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	154287370	154287371	154287370	+	High_confidence	6	6	6	0.192624	2.584963	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	7946867	7946898	7946878	+	High_confidence	49	49	132	4.237738	5.486775	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.893939
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	57794069	57794073	57794069	+	RAMPAGE_only	2	3	6	0.192624	2.584963	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	93447303	93447336	93447335	-	RAMPAGE_only	4	4	10	0.321041	3.321928	chr9	93447229	93447362	LINE|L2|L2c	+	chr9	93446923	93451208	FAM120AOS|ENST00000483056.5	-	93446923,93448368,93450478,93450944	93447697,93448489,93450599,93451208	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	216905369	216905378	216905377	-	RAMPAGE_only	13	13	25	0.802602	4.084963	chr1	216905163	216905699	LINE|L2|L2b	+	chr1	216505489	216939670	ESRRG|ENST00000487276.5	-	216505489,216519151,216564218,216567987,216650972,216677075,216865060,216936661,216939581	216507183,216519421,216564380,216568098,216651089,216677491,216865178,216936699,216939670	0.760000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	130894344	130894379	130894344	-	RAMPAGE_only	6	6	24	0.770498	4.229871	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	0.958333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	212792435	212792473	212792472	-	High_confidence	5	5	19	0.609977	3.683542	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.842105
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	122064308	122064376	122064332	+	RAMPAGE_only	22	22	112	3.595656	6.132398	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.642857
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	36218129	36218149	36218129	+	RAMPAGE_only	3	4	10	0.321041	2.921928	chr19	36218122	36218357	SINE|MIR|MIR	+	chr19	36215132	36238774	ZNF146|ENST00000443387.2	+	36215132,36218121,36228747,36235658	36215196,36218195,36228819,36238774	0.900000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	92536601	92536704	92536601	-	High_confidence	71	76	124	3.980905	5.930291	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.951613
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	147937502	147937580	147937579	+	RAMPAGE_only	8	8	51	1.637308	4.855389	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.627451
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	24289237	24289255	24289237	-	RAMPAGE_only	4	4	9	0.288937	2.500000	chr6	24289151	24289204	SINE|5S-Deu-L2|AmnSINE1	-	chr6	24238229	24358052	MSTRG.23699.3	-	24238229,24288851,24301714,24301967,24353568,24357457	24278211,24291078,24301846,24302044,24353623,24358052	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	67818311	67818322	67818311	-	High_confidence	8	8	19	0.609977	3.503258	chr5	67817944	67823959	LINE|L1|L1PA3	+	chr5	67699450	67818322	AC106798.1|ENST00000506819.1	-	67699450,67701490,67817939,67818279	67699725,67701652,67818048,67818322	0.736842
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	104912167	104912178	104912177	-	RAMPAGE_only	3	3	6	0.192624	2.584963	chr7	104912171	104912241	LINE|L1|L1MEi	+	chr7	104911915	104926630	LHFPL3-AS2|ENST00000453666.2	-	104911915,104915705,104917559,104920384,104926452	104912076,104915827,104917980,104920425,104926630	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	111813120	111813154	111813153	-	RAMPAGE_only	18	21	41	1.316267	4.753226	chr9	111813057	111813233	SINE|MIR|MIRb	+	chr9	111686518	111795008	C9orf84|NR_109816.1	-	111686518,111691550,111693798,111694230,111699953,111702104,111705246,111706567,111707854,111713099,111714444,111718183,111722408,111723791,111727632,111738279,111741475,111746233,111748091,111756324,111758083,111758694,111775790,111780929,111785911,111791373,111794899	111686870,111692511,111693948,111694362,111700047,111702226,111705364,111706746,111707924,111713172,111714623,111718288,111722585,111723911,111728049,111738522,111741570,111746342,111748199,111756478,111758195,111758848,111775975,111781017,111786035,111791454,111795008	0.804878
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	27483299	27483322	27483299	-	RAMPAGE_only	2	2	8	0.256833	2.521641	chr2	27483001	27483259	SINE|Alu|AluJb	-	chr2	27470812	27489678	IFT172|ENST00000511842.5	-	27470812,27472249,27476640,27477216,27477558,27477994,27479508,27480025,27481045,27483288,27483579,27483871,27484226,27485017,27485359,27489614	27471095,27472362,27476726,27477320,27477612,27478156,27479604,27480149,27481260,27483376,27483659,27483937,27484266,27485130,27485503,27489678	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	12522810	12522818	12522813	+	RAMPAGE_only	19	19	44	1.412579	4.462288	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.840909
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	15657883	15657884	15657883	+	RAMPAGE_only	13	13	13	0.417353	3.085055	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738504	15877535	MSTRG.19256.1	+	15738504,15877236	15738754,15877535	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	143070964	143070965	143070964	+	RAMPAGE_only	20	20	21	0.674186	3.921928	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143091361	143238352	ARHGAP15|ENST00000409869.5	+	143091361,143092156,143155476,143202133,143216383,143228580,143235945	143091422,143092258,143155655,143202202,143216445,143228668,143238352	0.809524
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	8436023	8436026	8436025	-	RAMPAGE_only	5	8	9	0.288937	3.000000	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	109383496	109383509	109383497	-	High_confidence	6	9	17	0.545769	3.702820	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.882353
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	14771140	14771179	14771162	-	High_confidence	9	10	24	0.770498	4.095795	chr9	14771029	14771174	LINE|L2|L2a	+	chr9	14737395	14771874	MSTRG.27854.6	-	14737395,14740148,14746352,14746922,14747263,14747680,14748400,14750126,14759771,14769723,14770604	14737595,14740234,14746468,14747051,14747428,14747728,14748639,14756446,14759901,14769868,14771874	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	137208556	137208568	137208556	+	RAMPAGE_only	4	4	8	0.256833	2.807355	chr2	137207967	137208585	LTR|ERV1|PABL_A	-	chr2	136990891	137677717	THSD7B|ENST00000413152.3	+	136990891,137056419,137094872,137115123,137160212,137170740,137231043,137232898,137242456,137272532,137275922,137405612,137411608,137450844,137563212,137563217,137572405,137616174,137618391,137620608,137642487,137655500,137656795,137657064,137659663,137663382,137667773,137676523	136990937,137057230,137095121,137115293,137160368,137170938,137231235,137233133,137242572,137272662,137276026,137405807,137411872,137451024,137563214,137563354,137572556,137616316,137618507,137620726,137642633,137655660,137656969,137657160,137659746,137663575,137667861,137677717	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	48199418	48199450	48199424	-	RAMPAGE_only	9	9	35	1.123643	4.193429	chr17	48199174	48199607	LINE|L2|L2c	+	chr17	48180091	48185179	SKAP1|ENST00000579336.1	-	48180091,48182393,48184722	48180248,48182457,48185179	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	55893050	55893059	55893050	+	High_confidence	14	15	27	0.866810	3.176029	chr18	55887412	55893439	LINE|L1|L1PA3	-	chr18	55893037	56023462	AC009271.1|ENST00000589440.1	+	55893037,56017727,56023401	55893442,56017779,56023462	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	218287266	218287306	218287279	-	High_confidence	10	10	42	1.348371	4.696103	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	15417190	15417191	15417190	+	RAMPAGE_only	10	10	11	0.353145	3.121928	chr8	15417004	15417387	LTR|ERVL-MaLR|MSTA	+	chr8	15540086	15766649	TUSC3|NM_178234.2	+	15540086,15623079,15650696,15659506,15662155,15673746,15730665,15743537,15748374,15764202	15540568,15623249,15650814,15659647,15662296,15673836,15730729,15743612,15748465,15766649	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	6208681	6208682	6208681	-	High_confidence	165	166	166	5.329276	3.954275	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.963855
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	6866532	6866553	6866552	-	High_confidence	11	11	21	0.674186	4.247928	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	79631256	79631329	79631302	+	High_confidence	126	126	571	18.331427	6.686198	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.963222
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	96984672	96984689	96984688	+	RAMPAGE_only	2	3	8	0.256833	2.807355	chr5	96984730	96985064	LINE|L2|L2c	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	2502817	2502819	2502817	-	RAMPAGE_only	9	18	23	0.738394	4.349649	chrX	2502799	2503215	LTR|ERV1|MER41D	+	chrX	2486413	2500967	ZBED1|NM_001171136.1	-	2486413,2500816	2490772,2500967	0.826087
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	52169716	52169747	52169716	-	High_confidence	3	3	11	0.353145	3.095795	chr19	52169654	52169811	SINE|Alu|AluJb	+	chr19	52157365	52170386	ZNF836|ENST00000596428.5	-	52157365,52160464,52168057,52169647,52170359	52157540,52160591,52168152,52169781,52170386	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	107580245	107580267	107580264	+	High_confidence	672	673	3310	106.264487	6.932486	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.921148
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	160412454	160412508	160412454	-	RAMPAGE_only	2	3	11	0.353145	3.121928	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160406348	160408421	SLU7|ENST00000520841.1	-	160406348,160407475,160407745,160407970,160408328	160406629,160407615,160407813,160408068,160408421	0.818182
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	9065161	9065171	9065170	+	High_confidence	5	6	21	0.674186	4.121928	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.523810
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	90467511	90467534	90467522	+	RAMPAGE_only	5	5	13	0.417353	3.584963	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.769231
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	88418862	88418879	88418878	+	RAMPAGE_only	3	5	11	0.353145	3.121928	chr9	88418784	88418941	SINE|MIR|MIR	+	chr9	88406967	88475203	MSTRG.28223.9	+	88406967,88416342,88418777,88426381,88448940,88462495,88468371,88475077	88415699,88416766,88418951,88426591,88448989,88462749,88468605,88475203	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	2838255	2838262	2838258	+	RAMPAGE_only	6	7	27	0.866810	4.103910	chr4	2838108	2838543	LINE|L1|L1ME3B	-	chr4	2843856	2930076	ADD1|NM_176801.2	+	2843856,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763,2907742,2908514,2914883,2926013,2926641,2928170	2844024,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905108,2907844,2908604,2915040,2926112,2926675,2930076	0.703704
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	4726212	4726244	4726212	-	High_confidence	4	4	12	0.385249	3.277613	chr9	4725911	4728263	DNA|TcMar-Tigger|Tigger1	-	chr9	4709555	4726227	AK3|NM_001199856.1	-	4709555,4718418,4719134,4722505,4726082	4713096,4718537,4719307,4722625,4726227	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	45289375	45289420	45289396	+	RAMPAGE_only	2	2	10	0.321041	3.169925	chr21	45289210	45290050	LTR|ERV1|MER4D1	-	chr21	45288061	45297354	LINC00205|ENST00000647108.1	+	45288061,45289350,45290470,45296201	45288165,45289438,45293522,45297354	0.900000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	87041987	87042111	87042110	-	High_confidence	35	35	164	5.265068	6.309343	chr9	87041882	87047900	LINE|L1|L1PA3	+	chr9	87008450	87042126	LOC440173|NR_027471.1	-	87008450,87041870	87010210,87042126	0.560976
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	81154212	81154248	81154212	-	High_confidence	5	10	27	0.866810	4.236369	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	28525381	28525383	28525381	+	RAMPAGE_only	5	8	11	0.353145	2.921928	chr17	28525111	28525398	DNA|TcMar-Tigger|Tigger19b	+	chr17	28523940	28538896	FOXN1|ENST00000226247.2	+	28523940,28524502,28527250,28529093,28530748,28534330,28534706,28537116	28524092,28524967,28527361,28529224,28530845,28534538,28535198,28538896	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	52616767	52616864	52616767	-	RAMPAGE_only	6	8	37	1.187851	3.757397	chr19	52616561	52616863	SINE|Alu|AluSp	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	0.945946
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	12572735	12572758	12572757	-	RAMPAGE_only	4	4	9	0.288937	3.000000	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	24011756	24011757	24011756	+	High_confidence	11	11	11	0.353145	3.027169	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	23705513	23705531	23705513	-	RAMPAGE_only	2	2	9	0.288937	3.169925	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	57274833	57274839	57274833	+	RAMPAGE_only	4	4	10	0.321041	3.121928	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.900000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	17856034	17856041	17856040	-	RAMPAGE_only	2	4	7	0.224729	2.584963	chr6	17855745	17856010	SINE|Alu|AluJo	-	chr6	17759182	17987463	KIF13A|ENST00000378814.9	-	17759182,17764154,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571,17796668,17799265,17799951,17804360,17805474,17808767,17817019,17825767,17826037,17828239,17831100,17833960,17836877,17837471,17849376,17850322,17851954,17855436,17856029,17873376,17898167,17987053,17987408	17760877,17764946,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794704,17796820,17799439,17800113,17804510,17805615,17808930,17817233,17825934,17826124,17828370,17831235,17834071,17837090,17837583,17849489,17850457,17852042,17855617,17856122,17873437,17898180,17987144,17987463	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	80715199	80715208	80715199	+	High_confidence	2	3	7	0.224729	2.807355	chr5	80715199	80715329	LINE|L2|L2a	-	chr5	80715204	80761610	MSH3|ENST00000512258.1	+	80715204,80725452,80728850,80741463,80744505,80761545	80715393,80725565,80728965,80741548,80744615,80761610	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	93238443	93238467	93238466	+	RAMPAGE_only	3	3	14	0.449457	3.324863	chr7	93238439	93238541	LINE|L2|L2b	-	chr7	93232427	93257765	VPS50|ENST00000477935.1	+	93232427,93239865,93252652,93253862,93256508,93257393	93232500,93239934,93252775,93253931,93256562,93257765	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	52661514	52661570	52661537	+	RAMPAGE_only	3	3	13	0.417353	3.392747	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	37298760	37298761	37298760	+	RAMPAGE_only	12	12	16	0.513665	3.625000	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.937500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	42809306	42809308	42809306	+	High_confidence	6	13	13	0.417353	3.584963	chr3	42809252	42809581	LTR|ERV1|MER39	-	chr3	42809491	42864876	ACKR2|ENST00000497921.2	+	42809491,42819630,42839093,42864465	42809532,42819711,42839279,42864876	0.615385
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	141333512	141333517	141333512	+	RAMPAGE_only	13	14	20	0.642081	3.281373	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141636595	141733987	IL15|NM_172175.2	+	141636595,141656185,141688821,141719377,141720468,141721058,141721923,141727939,141729846,141732737	141636748,141656307,141689035,141719476,141720566,141721177,141722008,141727984,141729984,141733987	0.650000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	23536877	23536878	23536877	+	High_confidence	42	42	46	1.476787	4.594864	chr22	23536061	23537026	LTR|ERVK|LTR5_Hs	+	chr22	23536880	23539480	PCAT14|ENST00000629869.1	+	23536880,23538760	23537136,23539480	0.804348
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	132782305	132782335	132782334	-	RAMPAGE_only	2	2	7	0.224729	2.521641	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132768914	132822311	GOLGA3|ENST00000450791.6	-	132768914,132774156,132775140,132776633,132776957,132777665,132780797,132782295,132784163,132786338,132786692,132789026,132791215,132795851,132796538,132798339,132801766,132804715,132807176,132807890,132813306,132816539,132821995	132773294,132774320,132775305,132776756,132777090,132777805,132780914,132782493,132784307,132786555,132786787,132789290,132791293,132796220,132796700,132798477,132801969,132805022,132807288,132808549,132813419,132816812,132822311	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	68180162	68180179	68180178	-	High_confidence	3	4	11	0.353145	3.321928	chr11	68180123	68180214	SINE|MIR|MIRc	+	chr11	68171118	68180165	KMT5B|ENST00000323599.10	-	68171118,68171231,68171542,68173803,68174087,68175017,68180131	68171151,68171251,68171709,68173913,68174210,68175183,68180165	0.636364
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	227339331	227339333	227339331	+	High_confidence	24	29	39	1.252059	4.819910	chr2	227339254	227339802	LTR|ERVL-MaLR|MLT1G3	-	chr2	227340291	227357381	MFF|ENST00000456345.1	+	227340291,227347225,227355676,227356985	227340380,227347384,227355761,227357381	0.846154
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	84823419	84823420	84823419	-	RAMPAGE_only	11	11	11	0.353145	2.732159	chr11	84823340	84823581	LINE|L2|L2a	+	chr11	83459608	84923180	DLG2|ENST00000524982.5	-	83459608,83462001,83466707,83469200,83471625,83472726,83480371,83483252,83532707,83541681,83633210,83786689,83833613,83874419,83930327,83962884,83965323,83980505,84059314,84098922,84163460,84251237,84534569,84923076	83459924,83462093,83466817,83469373,83471727,83472777,83480413,83483298,83532783,83541858,83633325,83786792,83833770,83874488,83930483,83963023,83965468,83980642,84059484,84099047,84163511,84251291,84534731,84923180	0.545455
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	33148434	33148510	33148439	-	RAMPAGE_only	11	12	68	2.183077	5.424006	chr15	33148397	33148709	LTR|ERVL|LTR33	+	chr15	32774309	33154914	FMN1|ENST00000559047.5	-	32774309,32776834,32798803,32804280,32857014,32888171,32898833,32899978,32901910,32908489,32910473,32926173,32964106,32968713,33008013,33064956,33088798,33153047	32774354,32776919,32798953,32804332,32857107,32888292,32898893,32900125,32902040,32908578,32910535,32926261,32964257,32969477,33008075,33065074,33088974,33154914	0.514706
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	50785222	50785272	50785222	+	RAMPAGE_only	7	9	31	0.995226	4.506891	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.935484
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	56255807	56255842	56255841	-	RAMPAGE_only	4	4	15	0.481561	2.896292	chr3	56255648	56255816	LTR|Gypsy|MamGypLTR2c	-	chr3	56148987	56173899	ERC2|ENST00000484857.2	-	56148987,56173445	56149132,56173899	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	169812903	169812904	169812903	-	High_confidence	8	8	11	0.353145	2.646439	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	143043262	143043274	143043273	+	RAMPAGE_only	3	3	6	0.192624	2.584963	chr3	143043314	143043694	LINE|L2|L2b	+	chr3	143001622	143057653	U2SURP|ENST00000463563.6	+	143001622,143010814,143012221,143014310,143016256,143016841,143019968,143020598,143021349,143021472,143022496,143022852,143023974,143024483,143027148,143028339,143028482,143032783,143033270,143034887,143035981,143037178,143038107,143038893,143043116,143050938,143053675,143054942,143056311	143001673,143010859,143012353,143014409,143016371,143016975,143020036,143020693,143021385,143021555,143022662,143023064,143024018,143024548,143027253,143028406,143028646,143032946,143033350,143034975,143036104,143037335,143038203,143038960,143043276,143051049,143053794,143055119,143057653	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	80059918	80059933	80059918	+	High_confidence	129	141	281	9.021245	4.868347	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.996441
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	12773325	12773389	12773341	-	High_confidence	2	2	15	0.481561	2.896292	chr19	12773232	12773546	SINE|Alu|AluJo	-	chr19	12771394	12773253	HOOK2|ENST00000588052.5	-	12771394,12772189,12772612,12772779,12772993	12771477,12772252,12772680,12772912,12773253	0.933333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	140697966	140697967	140697966	+	RAMPAGE_only	4	5	7	0.224729	2.584963	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140691682	140699248	HARS2|ENST00000642452.1	+	140691682,140693590,140693934,140694184,140695507,140695737,140696028,140696520,140696942,140697163,140697568,140697931,140698492	140691756,140693665,140694054,140694280,140695633,140695845,140696201,140696614,140697070,140697406,140697685,140698078,140699248	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	101810793	101810827	101810793	-	RAMPAGE_only	5	5	16	0.513665	3.132915	chr10	101810745	101810978	SINE|Alu|AluSz6	-	chr10	101803746	101818418	MSTRG.3798.14	-	101803746,101806044,101807729,101810183,101811426,101813554,101817823	101804019,101806143,101807901,101811388,101813127,101813606,101818418	0.937500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	116990714	116990792	116990714	-	RAMPAGE_only	17	17	105	3.370928	5.582759	chr11	116990646	116990800	LINE|L2|L2	+	chr11	116893844	116957064	SIK3|ENST00000497049.5	-	116893844,116896252,116897192,116927218,116954043,116956947	116893967,116896376,116897317,116927380,116954107,116957064	0.838095
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	9965320	9965325	9965320	+	RAMPAGE_only	4	5	9	0.288937	2.725481	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	101333305	101333306	101333305	-	High_confidence	8	8	8	0.256833	2.750000	chr3	101333261	101333534	SINE|Alu|AluJr	+	chr3	101325539	101333269	SENP7|ENST00000394085.7	-	101325539,101327665,101328477,101328645,101330333,101331984,101332769	101326080,101327816,101328546,101328689,101330386,101332109,101333269	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	28233986	28234031	28234030	-	RAMPAGE_only	15	16	60	1.926244	4.671878	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.966667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	113704173	113704174	113704173	-	High_confidence	47	47	47	1.508892	4.985336	chr2	113703868	113704969	LTR|ERV1|LTR12E	-	chr2	113677701	113704078	AC017074.1|ENST00000424612.1	-	113677701,113688160,113703696	113677783,113688257,113704078	0.872340
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	153506173	153506174	153506173	-	RAMPAGE_only	26	27	27	0.866810	4.257756	chr1	153506014	153506369	LTR|ERVL-MaLR|THE1A	-	chr1	153457743	153460701	S100A7|ENST00000368723.3	-	153457743,153458872,153460607	153457970,153459030,153460701	0.925926
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	59301070	59301087	59301086	-	RAMPAGE_only	5	5	10	0.321041	2.646439	chr5	59300586	59301126	LTR|ERVL|MER21A	-	chr5	58969037	59276119	PDE4D|NM_001197220.1	-	58969037,58975656,58976349,58977190,58988492,58989754,58990803,58991831,58993371,59038858,59180594,59185188,59193499,59215776,59275337	58975080,58975839,58976472,58977345,58988592,58989919,58990902,58992004,58993465,59038971,59180644,59185262,59193536,59215968,59276119	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	22191597	22191598	22191597	+	RAMPAGE_only	5	5	7	0.224729	2.521641	chr6	22191486	22191937	LTR|ERVL-MaLR|MLT1C	-	chr6	22146653	22197219	CASC15|ENST00000606197.1	+	22146653,22173997,22191566,22194044	22147292,22174062,22191656,22197219	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	4782339	4782359	4782358	+	High_confidence	8	8	14	0.449457	3.546594	chr3	4782402	4782508	DNA|hAT-Charlie|MER117	+	chr3	4782339	4788458	ITPR1|ENST00000481415.2	+	4782339,4783815,4787946	4782741,4783920,4788458	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	28090339	28090398	28090390	+	High_confidence	101	101	758	24.334889	4.590061	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.984169
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	117492087	117492100	117492099	-	RAMPAGE_only	8	9	15	0.481561	3.456565	chr10	117491808	117492291	LTR|ERVL|LTR33	-	chr10	117490648	117494688	EMX2OS|ENST00000423419.1	-	117490648,117492020,117494568	117490911,117492109,117494688	0.600000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	176463170	176463171	176463170	+	High_confidence	311	323	394	12.649005	4.962267	chr1	176462794	176463370	LTR|ERV1|MER41E	+	chr1	176463170	176691204	PAPPA2|ENST00000367661.7	+	176463170,176555406,176594523,176670969,176690136	176463418,176557241,176595595,176671115,176691204	0.997462
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	204870055	204870095	204870055	+	High_confidence	21	24	78	2.504118	5.822078	chr1	204869798	204870066	LINE|L1|L1M5	-	chr1	204870830	205018371	NFASC|ENST00000404076.5	+	204870830,204920631,204944225,204952010,204954187,204954828,204957655,204968248,204968797,204970615,204973275,204974178,204974656,204975270,204976670,204978967,204979361,204980369,204981797,204984026,204985909,204987417,204988632,204991291,205009556,205012796,205016307	204871053,204920740,204944406,204952116,204954384,204954951,204957826,204968360,204968982,204970747,204973419,204974290,204974823,204975418,204976795,204979069,204979559,204980440,204982020,204984142,204986114,204987540,204988806,204991306,205009688,205012866,205018371	0.615385
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	117173209	117173219	117173218	-	High_confidence	2	3	8	0.256833	2.807355	chr1	117172717	117173259	LTR|ERV1|LTR12_	+	chr1	117143586	117173266	VTCN1|ENST00000359008.8	-	117143586,117147612,117153090,117156573,117170106,117173186	117145225,117147782,117153369,117156921,117170171,117173266	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	21361834	21361842	21361841	+	RAMPAGE_only	5	5	10	0.321041	3.169925	chr19	21361885	21362080	SINE|Alu|AluSp	+	chr19	21359020	21376424	ZNF738|ENST00000597492.1	+	21359020,21360474,21361765,21375237,21375868	21359143,21360596,21361858,21375364,21376424	0.600000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	97682364	97682381	97682364	-	RAMPAGE_only	5	5	11	0.353145	2.646439	chr9	97682150	97682371	DNA?|DNA?|UCON74	-	chr9	97675066	97675955	XPA|ENST00000485042.1	-	97675066,97675770	97675587,97675955	0.636364
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	141333575	141333592	141333575	+	RAMPAGE_only	18	20	51	1.637308	4.414833	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141636595	141733987	IL15|NM_172175.2	+	141636595,141656185,141688821,141719377,141720468,141721058,141721923,141727939,141729846,141732737	141636748,141656307,141689035,141719476,141720566,141721177,141722008,141727984,141729984,141733987	0.588235
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	140786066	140786067	140786066	-	RAMPAGE_only	6	7	7	0.224729	2.584963	chr2	140785621	140786177	LINE|L2|L2c	+	chr2	140231422	142131701	LRP1B|ENST00000389484.7	-	140231422,140234785,140238151,140239441,140247085,140270241,140274423,140297807,140314934,140321962,140323892,140325761,140334452,140335614,140350796,140352952,140356341,140357978,140358820,140364660,140370709,140371178,140373007,140378179,140385892,140442503,140444329,140444562,140450567,140456454,140457462,140475137,140485342,140487616,140492607,140495564,140501686,140502962,140506795,140509927,140514652,140516888,140525843,140526236,140534020,140536580,140540972,140541778,140598630,140601449,140700249,140701720,140702140,140702426,140715972,140716681,140769212,140770880,140776097,140813656,140839990,140840917,140850101,140851651,140867589,140868098,140883816,140886137,140902919,140907876,140922964,140950234,140951859,140982159,140989531,140993994,141005334,141013555,141015695,141019921,141048985,141055115,141058882,141062050,141188420,141229182,141247225,141254521,141480395,141810278,142130647	140233326,140234884,140238296,140239532,140247162,140270346,140274598,140297969,140315099,140322088,140324066,140325878,140334559,140335838,140351038,140353072,140356476,140358116,140358946,140364783,140370842,140371285,140373137,140378286,140386009,140442623,140444449,140444679,140450661,140456603,140457651,140475337,140485524,140487739,140492693,140495748,140501874,140503103,140506918,140510056,140514772,140517011,140525993,140526350,140534140,140536709,140541098,140541971,140598835,140601639,140700621,140701845,140702292,140702553,140716102,140716816,140769344,140771006,140776238,140813806,140840085,140841092,140850329,140851783,140867834,140868263,140884021,140886335,140903165,140908077,140923147,140950402,140951940,140982276,140989657,140994135,141005457,141013745,141015915,141020102,141049222,141055259,141059054,141062273,141188583,141229440,141247354,141254641,141480533,141810401,142131701	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	91826848	91826862	91826861	+	RAMPAGE_only	3	3	7	0.224729	2.521641	chr10	91826808	91826927	DNA|TcMar-Tigger|Tigger16b	+	chr10	91798393	91865475	TNKS2|NM_025235.3	+	91798393,91812982,91817133,91819269,91819481,91819938,91822295,91827016,91828284,91830922,91831102,91833852,91836918,91840560,91841282,91842171,91844918,91845751,91848382,91849511,91851215,91855028,91855613,91857424,91859461,91861998,91862936	91798889,91813207,91817229,91819306,91819557,91820033,91822362,91827203,91828406,91831014,91831181,91834024,91836998,91840706,91841448,91842391,91845028,91845940,91848635,91849594,91851336,91855126,91855688,91857530,91859648,91862155,91865475	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	23527462	23527493	23527462	+	RAMPAGE_only	2	2	12	0.385249	3.459432	chr22	23527401	23527785	LINE|L2|L2b	-	chr22	23536880	23539480	PCAT14|ENST00000629869.1	+	23536880,23538760	23537136,23539480	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	50443318	50443319	50443318	-	High_confidence	15	15	16	0.513665	3.506891	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.687500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	217440	217477	217440	+	High_confidence	4	4	10	0.321041	3.121928	chr3	217318	217820	LINE|L2|L2a	-	chr3	217534	328223	CHL1|ENST00000449294.6	+	217534,244612,319682,325958,328166	217700,244692,319867,326064,328223	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	65053784	65053854	65053820	-	RAMPAGE_only	22	24	97	3.114095	5.457391	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.742268
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	30624357	30624363	30624357	+	High_confidence	5	5	15	0.481561	2.610577	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624547	30634409	ARHGAP11B|ENST00000646747.1	+	30624547,30624722,30630702,30633489,30634169	30624612,30624816,30630773,30633586,30634409	0.600000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	10363706	10363707	10363706	+	High_confidence	13	14	18	0.577873	4.058814	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	100593604	100593624	100593623	+	High_confidence	4	4	15	0.481561	3.773557	chrX	100593595	100593649	LINE|CR1|L3	+	chrX	100593623	100597531	TNMD|ENST00000485971.1	+	100593623,100594260,100597503	100594035,100594362,100597531	0.733333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	42285961	42285989	42285988	+	High_confidence	3	3	10	0.321041	3.169925	chr2	42285898	42286069	SINE|MIR|MIR	+	chr2	42285922	42332548	EML4|ENST00000406175.3	+	42285922,42288226,42295124,42295380,42301240,42303103,42303314,42304483,42315961,42317426,42325466,42326153,42328885,42329733	42286379,42288322,42295259,42295516,42301392,42303229,42303446,42304551,42316050,42317524,42325554,42326252,42329016,42332548	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	49681696	49681697	49681696	-	RAMPAGE_only	5	5	7	0.224729	2.521641	chr20	49681391	49681712	LINE|L2|L2a	+	chr20	49632944	49713878	B4GALT5|ENST00000371711.4	-	49632944,49637340,49639677,49640477,49642467,49643525,49646964,49656567,49713575	49636459,49637442,49639800,49640665,49642584,49643650,49647078,49656702,49713878	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	14770886	14771066	14771065	-	High_confidence	17	17	70	2.247285	5.047599	chr9	14771029	14771174	LINE|L2|L2a	+	chr9	14737395	14771874	MSTRG.27854.6	-	14737395,14740148,14746352,14746922,14747263,14747680,14748400,14750126,14759771,14769723,14770604	14737595,14740234,14746468,14747051,14747428,14747728,14748639,14756446,14759901,14769868,14771874	0.928571
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	33603488	33603513	33603488	-	RAMPAGE_only	2	2	10	0.321041	3.121928	chr21	33603414	33603496	LINE|RTE-BovB|MamRTE1	+	chr21	33589768	33602265	CRYZL1|ENST00000437996.5	-	33589768,33591161,33595730,33597279,33599149,33602233	33589921,33591207,33595836,33597401,33599285,33602265	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	166850054	166850125	166850124	+	RAMPAGE_only	5	8	27	0.866810	4.161978	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.962963
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	138593997	138594028	138593997	-	High_confidence	3	3	10	0.321041	2.641604	chr3	138593850	138594045	SINE|MIR|MIRb	-	chr3	138572858	138594129	CEP70|ENST00000485115.1	-	138572858,138591853,138593708	138572932,138591956,138594129	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	20770244	20770245	20770244	+	High_confidence	5	5	8	0.256833	2.521641	chr16	20770283	20770498	DNA|hAT-Charlie|MER20	+	chr16	20770159	20797156	ACSM3|ENST00000562251.5	+	20770159,20775838,20777372,20779796,20780713,20780973,20781707,20784983,20786077,20790586,20792001,20792235,20796369,20796885	20770253,20776049,20777580,20779907,20780857,20781130,20781787,20785107,20786158,20790688,20792129,20792335,20796489,20797156	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	169342659	169342685	169342684	-	RAMPAGE_only	44	45	86	2.760950	5.814928	chr2	169342579	169342778	LINE|L2|L2c	+	chr2	169127108	169362534	LRP2|ENST00000649046.1	-	169127108,169129012,169132573,169137391,169138576,169139250,169139542,169140454,169142673,169145746,169146738,169150897,169152798,169154459,169156273,169157370,169162471,169165931,169168538,169169701,169170550,169172014,169173095,169173918,169175192,169176410,169177802,169181447,169182166,169185502,169187969,169191831,169193760,169196910,169198785,169201627,169202755,169203981,169205478,169206022,169206329,169209452,169211967,169213656,169216252,169220453,169225309,169226421,169231713,169233410,169235839,169237102,169238090,169239526,169240987,169242955,169243402,169244692,169246704,169247377,169256105,169257123,169259024,169270903,169272926,169275035,169277744,169279371,169280349,169282872,169289025,169290844,169292252,169294147,169294599,169307280,169318761,169320776,169362320	169128830,169129084,169132681,169137493,169138706,169139371,169139610,169140545,169142793,169145923,169146959,169151026,169152964,169154603,169156405,169157502,169162600,169166054,169168676,169169818,169170667,169172134,169173224,169174164,169175389,169176588,169178026,169181618,169182319,169186019,169188265,169192033,169193892,169197030,169198911,169201870,169202959,169204271,169205637,169206188,169207250,169209641,169212207,169213870,169216430,169220563,169225453,169226588,169231842,169233588,169236068,169237287,169238302,169239775,169241365,169243072,169243522,169244932,169246986,169247515,169256236,169257249,169259217,169271107,169273067,169275238,169277951,169279595,169280519,169283001,169289145,169290997,169292369,169294261,169294710,169307397,169318884,169320884,169362534	0.686047
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	30499541	30499570	30499541	-	High_confidence	6	6	33	1.059434	4.513795	chr16	30499510	30499629	SINE|MIR|MIR1_Amn	+	chr16	30498765	30499554	AC116348.2|ENST00000563751.1	-	30498765,30499363	30499151,30499554	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	160224711	160224731	160224711	-	RAMPAGE_only	3	3	8	0.256833	2.807355	chr6	160224029	160224675	LINE|L1|L1ME4b	-	chr6	160217013	160218284	SLC22A2|ENST00000498556.1	-	160217013,160217893,160218199	160217498,160218058,160218284	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	180692008	180692009	180692008	+	High_confidence	313	316	343	11.011698	5.137428	chr2	180691204	180692425	LTR|ERV1|LTR12C	+	chr2	180692103	180916939	SCHLAP1|NR_104322.1	+	180692103,180724595,180725190,180823932,180827240,180899649,180916272	180692441,180724690,180725291,180824070,180827507,180899718,180916939	0.967930
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73825034	73825154	73825034	-	RAMPAGE_only	47	48	258	8.282851	5.767256	chrX	73825002	73825055	SINE|MIR|MIRc	-	chrX	73823336	73829691	XIST|ENST00000649757.1	-	73823336,73829067	73827984,73829691	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	16198167	16198168	16198167	-	RAMPAGE_only	7	8	9	0.288937	2.750000	chr17	16198075	16198378	SINE|Alu|AluY	+	chr17	16030093	16194639	NCOR1|NM_001190440.1	-	16030093,16034764,16039432,16040440,16046950,16048844,16057513,16057906,16058470,16061757,16062104,16064067,16064869,16065484,16067893,16070164,16071408,16072144,16073428,16075533,16079963,16080407,16080606,16086281,16091862,16098366,16101249,16108785,16117887,16119422,16121051,16126081,16137310,16138157,16139007,16143605,16146375,16149450,16151945,16153338,16158759,16164978,16171802,16186553,16194461	16032483,16034944,16039654,16040494,16047093,16048988,16057737,16058064,16058599,16061894,16062270,16064187,16065019,16065694,16068121,16070525,16071665,16072228,16073569,16075702,16080064,16080509,16080727,16086442,16092058,16098496,16101805,16108912,16118027,16119485,16121269,16126206,16137412,16138212,16139186,16143696,16146548,16149517,16151998,16153395,16158873,16165161,16171995,16186687,16194639	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	66847501	66847507	66847506	-	RAMPAGE_only	5	5	9	0.288937	2.641604	chr1	66847293	66847456	SINE|Alu|FRAM	-	chr1	66837606	66862303	WDR78|ENST00000531552.1	-	66837606,66840468,66862146	66837796,66840671,66862303	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	59651208	59651236	59651214	+	RAMPAGE_only	6	6	50	1.605204	4.741468	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.920000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	159005961	159005962	159005961	+	High_confidence	11	11	11	0.353145	3.277613	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	123439093	123439136	123439135	-	RAMPAGE_only	4	4	12	0.385249	3.027169	chr6	123439047	123439232	SINE|MIR|MIRb	+	chr6	123216338	123637093	TRDN|NM_006073.3	-	123216338,123221486,123224092,123252411,123255080,123255866,123259623,123260611,123265317,123267706,123269848,123271138,123272963,123273336,123274640,123278317,123279055,123316456,123331878,123337618,123352538,123366134,123375604,123377715,123377865,123381369,123382117,123388521,123393623,123438062,123438943,123464905,123497192,123503718,123512302,123516140,123530505,123547339,123548453,123570922,123636753	123218740,123221522,123224131,123252435,123255125,123255902,123259662,123260638,123265338,123267751,123269866,123271186,123273011,123273363,123274670,123278347,123279082,123316495,123331929,123337669,123352586,123366182,123375631,123377742,123377898,123381390,123382147,123388551,123393677,123438122,123439003,123464983,123497252,123503901,123512362,123516206,123530565,123547372,123548612,123571132,123637093	0.916667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	67131744	67131767	67131744	+	RAMPAGE_only	5	5	15	0.481561	3.807355	chr8	67131654	67131745	LINE|L1|L1ME3B	-	chr8	67083847	67196614	CSPP1|NM_001291339.1	+	67083847,67086006,67093542,67095292,67103036,67105904,67111971,67113804,67115913,67118247,67118742,67131950,67137455,67154023,67158446,67158990,67161810,67163731,67164390,67172415,67175295,67177679,67179862,67190649,67193463,67195381	67084338,67086110,67093641,67095732,67103135,67105975,67112065,67113862,67116122,67118369,67118821,67132080,67137603,67154136,67158596,67159137,67161915,67163798,67164508,67172555,67175436,67177726,67179926,67190759,67193602,67196614	0.600000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	152225899	152225912	152225899	-	High_confidence	9	9	18	0.577873	3.969816	chr4	152225850	152226017	SINE|MIR|MIR3	+	chr4	152207420	152225870	AC079340.2|ENST00000504957.1	-	152207420,152225243,152225830	152207668,152225450,152225870	0.611111
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	133089611	133089678	133089677	+	RAMPAGE_only	24	30	136	4.366154	5.840118	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.977941
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	34588450	34588453	34588450	-	High_confidence	20	35	46	1.476787	4.697475	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.913043
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	35432451	35432534	35432451	-	High_confidence	13	17	61	1.958349	5.203516	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.934426
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	118393264	118393265	118393264	+	High_confidence	4	4	6	0.192624	2.584963	chrX	118393300	118393615	SINE|Alu|AluJb	+	chrX	118392747	118449336	WDR44|ENST00000371848.3	+	118392747,118394054,118395248,118396969,118398386,118404337,118406874,118409488,118410894,118432780,118436701,118441367,118442243,118442564,118443559,118444359,118447059,118448892	118393271,118394185,118395344,118397106,118398470,118404444,118407026,118409627,118410959,118432894,118436824,118441559,118442345,118442680,118443687,118444494,118447114,118449336	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	65642904	65642933	65642904	+	High_confidence	2	2	8	0.256833	2.500000	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	99286090	99286091	99286090	+	RAMPAGE_only	24	24	31	0.995226	4.161406	chr2	99285899	99286294	LTR|ERVL-MaLR|MSTC	+	chr2	99307441	99322741	AC079447.1|ENST00000465095.1	+	99307441,99321152,99321950,99322508	99307479,99321265,99322028,99322741	0.967742
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	67231152	67231162	67231152	-	RAMPAGE_only	7	7	15	0.481561	2.842371	chr10	67230665	67236674	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.866667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	182928788	182928798	182928788	-	RAMPAGE_only	9	9	16	0.513665	3.577820	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	23636366	23636367	23636366	+	High_confidence	36	36	45	1.444683	4.782740	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	0.933333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	46895739	46895751	46895739	+	RAMPAGE_only	3	3	17	0.545769	3.969816	chr3	46895551	46895745	SINE|MIR|MIRc	-	chr3	46892720	46898734	PTH1R|ENST00000490109.1	+	46892720,46893906,46895734,46897854,46898073,46898377,46898661	46892815,46894009,46895869,46897965,46898192,46898472,46898734	0.764706
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	42404727	42404806	42404766	+	High_confidence	12	12	77	2.472014	5.594391	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404778	42412315	CAPN3|ENST00000337571.8	+	42404778,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412315	0.935065
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	74000350	74000474	74000473	+	RAMPAGE_only	12	12	56	1.797828	4.399250	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.964286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	103129609	103129651	103129650	+	High_confidence	4	6	14	0.449457	3.807355	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	0.785714
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	38121491	38121492	38121491	+	High_confidence	7	7	8	0.256833	2.521641	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	91462209	91462211	91462210	-	High_confidence	5	9	14	0.449457	3.392747	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.785714
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	154975497	154975525	154975497	+	High_confidence	6	6	13	0.417353	3.251629	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.769231
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	25149018	25149048	25149018	-	High_confidence	2	2	10	0.321041	3.121928	chr16	25148832	25149129	LTR|ERV1|LTR35	-	chr16	25140570	25149032	LCMT1-AS2|NR_039998.1	-	25140570,25146247,25148705	25140858,25148239,25149032	0.900000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	195688680	195688725	195688693	+	High_confidence	2	2	16	0.513665	3.373557	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688681	195708807	MUC20-OT1|ENST00000627562.2	+	195688681,195689338,195699029,195701379,195708133	195688797,195689438,195699207,195701495,195708807	0.812500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	95652064	95652076	95652075	+	High_confidence	3	3	11	0.353145	3.321928	chr14	95651754	95652375	LTR|ERV1|LTR24C	-	chr14	95651177	95671850	TCL6|ENST00000483087.5	+	95651177,95652376,95654508,95663255,95669550,95670441,95671330,95671676	95652226,95652489,95654626,95663635,95669617,95670577,95671487,95671850	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	113222818	113223212	113223002	-	RAMPAGE_only	21	27	383	12.295861	6.969566	chr2	113222501	113223504	LINE|L2|L2a	+	chr2	113218527	113278898	MSTRG.16461.11	-	113218527,113220091,113235393,113236600,113241550,113242007,113242689,113278369,113278830	113218609,113227256,113235582,113236721,113241726,113242130,113242778,113278469,113278898	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	29093260	29093294	29093260	-	RAMPAGE_only	7	7	23	0.738394	4.297079	chr7	29093108	29093406	SINE|Alu|AluSx1	+	chr7	28995630	29146497	CPVL|ENST00000396276.7	-	28995630,29030576,29064060,29066022,29071772,29072300,29086483,29092622,29095083,29096102,29112703,29120892,29146340	28995882,29030759,29064234,29066121,29071904,29072423,29086550,29092702,29095142,29096217,29112822,29121071,29146497	0.782609
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	116648842	116648903	116648864	-	RAMPAGE_only	7	7	28	0.898914	4.469670	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.892857
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	44912446	44912471	44912470	-	High_confidence	3	3	10	0.321041	2.947703	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.600000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	19487898	19487901	19487898	-	High_confidence	9	9	19	0.609977	3.366091	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.789474
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	11111805	11111830	11111805	-	High_confidence	6	6	14	0.449457	3.334679	chr6	11111706	11112217	LTR|ERV1|MER50	-	chr6	11102488	11111838	ERVFRD-1|NM_207582.2	-	11102488,11111676	11105630,11111838	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73837666	73837667	73837666	-	RAMPAGE_only	4	4	6	0.192624	2.584963	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	48868595	48868631	48868613	-	High_confidence	833	952	4133	132.686141	7.828880	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.986934
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	102397687	102397826	102397714	-	RAMPAGE_only	13	17	133	4.269842	5.921457	chr11	102397661	102397799	DNA|hAT-Charlie|Charlie16a	-	chr11	102396331	102452839	TMEM123|ENST00000361236.7	-	102396331,102401538,102401915,102452523	102398891,102401692,102402206,102452839	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	61856218	61856236	61856235	+	RAMPAGE_only	4	4	11	0.353145	3.095795	chr1	61856274	61856495	SINE|MIR|MIR	+	chr1	61805509	62163504	PATJ|ENST00000484937.5	+	61805509,61808473,61822944,61827421,61833653,61856029,61861550,61864237,61875242,61884236,61899582,61901281,61908371,61914586,61927729,61990167,62017855,62037976,62050965,62079449,62084514,62108436,62114052,62116531,62117131,62121185,62123020,62127971,62128840,62148283,62153357,62160907,62162882	61805524,61808530,61823079,61827583,61833785,61856239,61861667,61864633,61875366,61884408,61899654,61901459,61908482,61914664,61927829,61990364,62017947,62038049,62051058,62079567,62084648,62108520,62114246,62116679,62117218,62121295,62123058,62128094,62128945,62148390,62153481,62161389,62163504	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	65570349	65570350	65570349	+	High_confidence	9	10	11	0.353145	3.321928	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570337	65681466	LINC01515|ENST00000433152.8	+	65570337,65571424,65572934,65585484,65585664,65615635,65680959	65570545,65571579,65573056,65585567,65585802,65615761,65681466	0.636364
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100829398	100829422	100829421	+	High_confidence	4	5	9	0.288937	2.947703	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	34511639	34511820	34511819	-	High_confidence	15	20	201	6.452919	6.553040	chr11	34511819	34511851	LINE|CR1|X6A_LINE	-	chr11	34478794	34511799	ELF5|NM_198381.1	-	34478794,34480771,34482430,34490008,34493478,34505628,34511543	34480314,34480967,34482499,34490059,34493712,34505753,34511799	0.905473
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	144533141	144533170	144533141	+	RAMPAGE_only	6	6	18	0.577873	3.852169	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	50737309	50737345	50737344	+	RAMPAGE_only	2	2	7	0.224729	2.807355	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50740266	50744808	LUC7L3|ENST00000507503.1	+	50740266,50741101,50741656,50743705,50744651	50740345,50741246,50741731,50743810,50744808	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	36009824	36009868	36009833	-	RAMPAGE_only	15	15	90	2.889367	5.952932	chr5	36008558	36010128	LTR|ERVL-MaLR|MSTA-int	-	chr5	35953107	35991605	UGT3A1|ENST00000515801.5	-	35953107,35954818,35957187,35961988,35965385,35968018,35988449,35990964	35954478,35955864,35957419,35962951,35965917,35968133,35988551,35991605	0.611111
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	95000465	95000481	95000480	+	RAMPAGE_only	41	42	137	4.398258	5.322264	chr4	95000399	95000534	SINE|Alu|AluSc	+	chr4	94996231	95154673	BMPR1B|ENST00000512312.5	+	94996231,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547	94996384,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95154673	0.649635
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	194486602	194486632	194486631	-	High_confidence	2	2	7	0.224729	2.521641	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	9409672	9409712	9409694	-	RAMPAGE_only	2	2	10	0.321041	3.169925	chr5	9409587	9409722	SINE|MIR|MIR1_Amn	+	chr5	9202123	9380201	SEMA5A|ENST00000513968.4	-	9202123,9224673,9226868,9237827,9318371,9337712,9379822,9380106	9202240,9224887,9226967,9237890,9318417,9337812,9380023,9380201	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	201427175	201427176	201427175	-	RAMPAGE_only	10	10	10	0.321041	3.121928	chr1	201427119	201427295	SINE|MIR|MIR	-	chr1	201408863	201429866	TNNI1|ENST00000336092.8	-	201408863,201410325,201411356,201413031,201414517,201415212,201417115,201417782,201421672,201427174,201428837,201429698	201409250,201410435,201411533,201413121,201414649,201415254,201417119,201417812,201421726,201427293,201429274,201429866	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	52579438	52579439	52579438	+	RAMPAGE_only	6	6	9	0.288937	2.750000	chr6	52579191	52579722	LTR|ERVL-MaLR|MLT1F1	+	chr6	52578365	52583559	TRAM2-AS1|ENST00000605910.1	+	52578365,52578501,52579374,52582862	52578393,52578594,52579609,52583559	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	149006003	149006017	149006003	+	RAMPAGE_only	19	19	35	1.123643	4.550293	chr2	149005870	149006070	SINE|MIR|MIRc	-	chr2	148999934	149026759	KIF5C|ENST00000482151.1	+	148999934,149000721,149005392,149007962,149010134,149011569,149023077	149000524,149000782,149005464,149008067,149010351,149011683,149026759	0.771429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	2867814	2867903	2867850	+	High_confidence	16	16	76	2.439910	5.556062	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.907895
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	1291745	1291764	1291745	+	RAMPAGE_only	2	2	8	0.256833	2.807355	chr16	1291297	1291765	LTR|ERV1|MER50	-	chr16	1308879	1327018	UBE2I|ENST00000355803.8	+	1308879,1314019,1314292,1315653,1320173,1320437,1324729	1309419,1314096,1314376,1315726,1320283,1320517,1327018	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	21360437	21360438	21360437	-	RAMPAGE_only	5	5	8	0.256833	2.807355	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351471	21384266	SUPT16H|ENST00000216297.6	-	21351471,21353487,21353702,21354410,21357196,21357926,21358314,21359483,21360414,21360845,21361077,21362196,21362793,21363033,21363232,21363437,21364826,21365069,21366438,21368268,21369203,21369749,21370335,21371873,21373337,21383861	21352818,21353565,21353832,21354540,21357366,21358002,21358427,21359609,21360533,21360972,21361213,21362324,21362947,21363149,21363328,21363503,21364939,21365143,21366529,21368441,21369355,21369896,21370488,21372044,21373430,21384266	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	77175226	77175303	77175226	+	High_confidence	4	4	24	0.770498	4.262692	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.958333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	58943518	58943581	58943537	+	High_confidence	7	7	28	0.898914	4.351823	chr11	58943541	58944242	LTR|ERV1|MER57-int	+	chr11	58943370	58955334	GLYATL1|ENST00000524881.5	+	58943370,58943542,58947045,58947857,58954769,58955175	58943460,58943666,58947165,58947965,58954896,58955334	0.785714
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	45441843	45441878	45441849	-	High_confidence	88	102	226	7.255521	5.367267	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45430651	45441808	AC025580.1|ENST00000559553.1	-	45430651,45433612,45441780	45430814,45434150,45441808	0.915929
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	77532106	77532107	77532106	+	High_confidence	9	9	13	0.417353	3.392747	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	95509594	95509637	95509594	-	RAMPAGE_only	4	5	16	0.513665	3.506891	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	0.812500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	65300634	65300635	65300634	-	High_confidence	19	19	19	0.609977	3.932138	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65266576	65300618	PARP16|ENST00000558873.1	-	65266576,65270934,65282546,65300196	65266768,65271072,65282632,65300618	0.894737
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	99893444	99893492	99893444	-	High_confidence	10	10	33	1.059434	3.881833	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	32479856	32479866	32479856	+	High_confidence	2	2	9	0.288937	2.641604	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	42607606	42607607	42607606	-	RAMPAGE_only	35	41	42	1.348371	4.056783	chr21	42607449	42607803	LTR|ERVL|LTR47A	-	chr21	42599279	42615058	LINC01671|ENST00000419628.1	-	42599279,42614852	42600848,42615058	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	14841454	14841473	14841454	-	RAMPAGE_only	8	10	16	0.513665	3.077820	chr9	14841191	14841424	DNA|hAT-Charlie|MER103C	-	chr9	14775934	14874363	MSTRG.27854.13	-	14775934,14784369,14788918,14792742,14797497,14801651,14804955,14806660,14807939,14812811,14816777,14819233,14823159,14824024,14824795,14841446,14842315,14851283,14857552,14859182,14863808,14868743	14776253,14784634,14789114,14792884,14797642,14801874,14805152,14806846,14808134,14813064,14816871,14819442,14823327,14824115,14824992,14841589,14848773,14851607,14857749,14859484,14863903,14874363	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	100082571	100082580	100082579	-	High_confidence	3	3	8	0.256833	2.807355	chr7	100082301	100082600	SINE|Alu|AluSx1	+	chr7	100069970	100082548	ZNF3|NM_001278287.1	-	100069970,100075134,100075541,100077302,100079535,100082300	100072212,100075261,100075630,100077433,100079572,100082548	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	73941071	73941112	73941106	+	RAMPAGE_only	6	6	21	0.674186	3.484184	chr2	73940944	73941415	LTR|ERVL-MaLR|MLT1F	+	chr2	73926874	73958946	DGUOK|ENST00000418996.5	+	73926874,73946718,73958145,73958709	73927052,73946906,73958245,73958946	0.761905
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	22714091	22714092	22714091	+	High_confidence	73	73	76	2.439910	5.556062	chr4	22714022	22714187	LTR|ERV1|LTR78	-	chr4	22714088	22819527	GBA3|ENST00000511446.2	+	22714088,22735980,22747295,22748836,22818720	22714150,22736208,22748092,22748960,22819527	0.671053
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	125219559	125219594	125219583	+	High_confidence	19	31	75	2.407806	4.994504	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.933333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	48492652	48492656	48492655	-	High_confidence	6	7	17	0.545769	4.000000	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.705882
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	212413893	212414044	212414033	-	RAMPAGE_only	12	12	97	3.114095	3.490773	chr2	212413911	212414059	SINE|MIR|MIRc	+	chr2	212399586	212425232	MSTRG.17183.1	-	212399586	212425232	0.989691
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	107266313	107266314	107266313	+	RAMPAGE_only	20	23	24	0.770498	3.754442	chr4	107265946	107266484	LTR|ERVL|MLT2F	+	chr4	107258699	107301870	AC104663.1|ENST00000508555.1	+	107258699,107301488	107258874,107301870	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	2759787	2759798	2759797	+	High_confidence	5	5	11	0.353145	3.321928	chr16	2759705	2759830	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	3083280	3083310	3083297	+	RAMPAGE_only	4	5	13	0.417353	3.334679	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	110440313	110440374	110440313	-	RAMPAGE_only	18	22	73	2.343597	5.515669	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.917808
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	42245275	42245305	42245275	+	High_confidence	6	6	15	0.481561	3.640224	chr2	42245085	42245395	SINE|Alu|AluSx	-	chr2	42245121	42330744	MSTRG.15806.9	+	42245121,42245504,42256500,42261120,42264705,42280849,42282822,42284633,42286268,42288226,42295124,42295380,42301240,42303103,42303314,42304483,42315961,42317426,42325466,42326153,42328885,42329733	42245414,42245687,42256630,42263306,42264731,42280973,42282972,42284703,42286379,42288322,42295259,42295516,42301392,42303229,42303446,42304551,42316050,42317524,42325554,42326252,42329016,42330744	0.866667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	12183997	12184059	12183997	-	RAMPAGE_only	3	3	18	0.577873	3.725481	chr12	12183981	12184016	LINE|RTE-BovB|MamRTE1	-	chr12	12116028	12244304	LRP6|ENST00000538239.5	-	12116028,12120369,12121085,12124564,12125295,12126690,12130782,12131820,12135174,12138324,12147365,12148941,12150835,12158828,12159779,12162192,12164272,12165078,12179809,12181042,12183979,12186922,12203202,12244261	12119330,12120403,12121420,12124662,12125432,12126921,12130893,12132057,12135300,12138534,12147556,12149153,12151038,12159155,12159964,12162419,12164562,12165295,12179981,12181439,12184111,12187119,12203400,12244304	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	46463626	46463654	46463653	-	High_confidence	3	4	8	0.256833	2.750000	chr3	46463529	46463617	LTR|Gypsy|MamGypsy2-LTR	-	chr3	46436004	46463671	LTF|NM_001199149.1	-	46436004,46437939,46439295,46441415,46443440,46445280,46446439,46447307,46448862,46449853,46450494,46454304,46455294,46455795,46456289,46459655,46463443	46436229,46438129,46439480,46441483,46443582,46445436,46446493,46447398,46449017,46450028,46450673,46454360,46455442,46455978,46456398,46459819,46463671	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	2631393	2631401	2631395	-	RAMPAGE_only	3	4	8	0.256833	2.807355	chr11	2630480	2631686	LINE|L1|L1MA9	-	chr11	2608327	2699994	KCNQ1OT1|ENST00000597346.1	-	2608327	2699994	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	40453541	40453547	40453546	-	High_confidence	1082	1090	1907	61.222471	7.006624	chr2	40453521	40453703	DNA|hAT-Charlie|MER5B	+	chr2	40115252	40453557	MSTRG.15802.7	-	40115252,40139400,40160764,40164853,40174824,40177751,40428472,40453408	40115629,40139676,40160864,40164984,40174842,40177855,40430304,40453557	0.792344
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	29209020	29209024	29209023	+	RAMPAGE_only	6	6	11	0.353145	2.550341	chr12	29208990	29209077	LINE|L2|L2	-	chr12	29223622	29335616	FAR2|NM_018099.4	+	29223622,29270411,29293299,29297020,29307657,29309185,29311027,29311882,29316840,29321794,29332599,29333631	29223894,29270638,29293475,29297200,29307835,29309230,29311146,29311950,29317012,29321924,29332727,29335616	0.636364
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	78438685	78438692	78438685	+	RAMPAGE_only	4	4	8	0.256833	2.750000	chr4	78438638	78438689	LINE|CR1|L3	-	chr4	78419037	78446633	FRAS1|ENST00000510944.3	+	78419037,78424387,78429094,78430291,78432356,78438569,78438901,78441161,78445521	78419063,78424420,78429226,78430417,78432604,78438718,78439064,78441297,78446633	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	32521809	32521810	32521809	-	High_confidence	4	4	7	0.224729	2.521641	chr13	32521693	32521992	SINE|Alu|AluSx1	+	chr13	32432830	32522275	N4BP2L2|ENST00000509076.1	-	32432830,32436360,32438651,32442387,32517856,32521372	32432972,32436405,32438737,32444124,32518003,32522275	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	14216583	14216636	14216627	+	High_confidence	5	5	20	0.642081	3.646439	chr12	14216543	14216731	LTR|ERV1|LTR12F	+	chr12	14216589	14221297	AC092112.1|ENST00000538329.1	+	14216589,14220861	14216793,14221297	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	86353535	86353546	86353535	+	RAMPAGE_only	2	2	7	0.224729	2.807355	chr8	86353492	86353782	SINE|Alu|AluSz	-	chr8	86342773	86387026	WWP1|ENST00000523863.5	+	86342773,86368938,86374029,86380725,86381504,86386835	86342930,86369031,86374120,86380864,86381629,86387026	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	166850177	166850228	166850177	+	RAMPAGE_only	2	3	19	0.609977	4.058814	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.947368
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	51886854	51886881	51886854	-	RAMPAGE_only	2	2	9	0.288937	3.169925	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51878400	51887889	ZNF577|ENST00000638538.1	-	51878400,51880322,51880678,51886115,51886820,51887831	51878515,51880401,51880877,51886145,51886912,51887889	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	146840123	146840124	146840123	+	RAMPAGE_only	8	9	11	0.353145	3.121928	chr2	146840066	146840645	LINE|L1|L1PB	-	chr2	146837748	146850310	LINC01911|ENST00000450667.1	+	146837748,146838039,146846628,146848248,146849144,146850255	146837811,146838205,146846818,146848411,146849313,146850310	0.636364
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	39723412	39723440	39723439	+	RAMPAGE_only	2	3	7	0.224729	2.807355	chr13	39723473	39723691	SINE|MIR|MIR	+	chr13	39655723	39752500	COG6|ENST00000356576.8	+	39655723,39656825,39659363,39660809,39665095,39677467,39679537,39679974,39682170,39687502,39687707,39689759,39694633,39699500,39719235,39719659,39723332,39724507,39727468,39750945	39655879,39656890,39659507,39660881,39665154,39677579,39679620,39680045,39682264,39687631,39687799,39689824,39694725,39699618,39719367,39719827,39723440,39724561,39727548,39752500	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	103085353	103085377	103085353	-	RAMPAGE_only	2	2	7	0.224729	2.584963	chr4	103085151	103085336	DNA|hAT-Charlie|MER58A	-	chr4	103079478	103099808	BDH2|ENST00000464039.5	-	103079478,103082080,103082870,103085348,103091176,103092599,103095202,103096182,103098643,103099782	103079755,103082173,103082929,103086540,103091285,103092696,103095281,103096274,103099400,103099808	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100138810	100138811	100138810	+	RAMPAGE_only	7	7	11	0.353145	3.121928	chr14	100138741	100139027	LINE|L2|L2b	-	chr14	100019381	100140117	EVL|ENST00000544450.6	+	100019381,100084686,100097480,100123538,100126706,100128518,100129562,100132718,100135904,100137577,100137739	100019687,100084855,100097658,100123602,100126771,100128748,100129684,100132779,100135968,100137644,100140117	0.636364
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	47056645	47056673	47056659	-	RAMPAGE_only	2	2	9	0.288937	2.500000	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	8824151	8824180	8824179	-	High_confidence	2	2	8	0.256833	2.807355	chr19	8823986	8824510	LTR|ERVL-MaLR|MLT1F	+	chr19	8810937	8825099	ZNF558|ENST00000597304.5	-	8810937,8812560,8813126,8821179,8821441,8822628,8824081,8825001	8812063,8812643,8813222,8821306,8822091,8822724,8824417,8825099	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	27613327	27613339	27613338	+	High_confidence	12	13	37	1.187851	4.764858	chr14	27612881	27613894	LTR|ERV1|MER4B-int	+	chr14	27612610	27639636	LINC00645|ENST00000557399.1	+	27612610,27613420,27619822,27634243,27636419	27612677,27613496,27619873,27634344,27639636	0.621622
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	79455315	79455339	79455315	+	RAMPAGE_only	15	16	41	1.316267	4.686582	chr7	79455163	79455401	SINE|MIR|MIRb	+	chr7	79454011	79471048	MAGI2-AS3|ENST00000448195.5	+	79454011,79454885,79458846,79470782	79454244,79455007,79458999,79471048	0.560976
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	109179253	109179282	109179281	+	RAMPAGE_only	6	6	14	0.449457	3.521641	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109152697	109266555	MSTRG.6977.8	+	109152697,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064,109260479,109262356,109264231,109265109,109265388,109266235	109154940,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260149,109260657,109262469,109264386,109265280,109265525,109266555	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	24572911	24572960	24572911	+	RAMPAGE_only	5	5	21	0.674186	3.576618	chr22	24572952	24573216	SINE|Alu|AluJr	+	chr22	24555649	24574964	SNRPD3|NM_001278656.1	+	24555649,24557656,24567983,24571915	24556057,24557800,24568176,24574964	0.904762
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	26474345	26474346	26474345	+	RAMPAGE_only	11	11	17	0.545769	3.969816	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.647059
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	5822712	5822739	5822738	+	RAMPAGE_only	2	2	9	0.288937	2.750000	chr4	5822680	5823092	LTR|ERV1|MER83	+	chr4	5793513	5832302	MSTRG.20889.7	+	5793513,5797021,5798585,5801949,5804729,5808200,5809517,5810338,5810955,5818210	5793717,5797232,5798792,5802094,5804841,5808327,5809611,5810450,5814162,5832302	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	78380594	78380626	78380625	+	RAMPAGE_only	4	4	10	0.321041	2.725481	chr4	78380443	78380717	DNA|TcMar-Tigger|Tigger19a	+	chr4	78057569	78446633	FRAS1|NM_001166133.1	+	78057569,78065984,78237509,78245232,78252391,78255241,78265024,78266833,78267240,78278654,78281397,78282819,78284404,78286404,78308065,78315593,78317367,78318809,78333271,78337673,78363512,78363907,78369837,78372717,78374110,78375738,78379725,78384058,78387374,78400733,78407662,78412968,78418948,78421862,78424387,78429094,78430291,78432356,78438569,78438901,78441161,78445521	78058085,78066016,78237617,78245325,78252551,78255375,78265108,78266935,78267432,78278744,78281433,78282967,78284548,78286539,78308209,78315734,78317508,78318986,78333412,78337817,78363665,78364054,78369984,78372858,78374251,78375879,78379996,78384143,78387701,78400887,78407841,78413085,78419063,78422000,78424420,78429226,78430417,78432604,78438718,78439064,78441297,78446633	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	62366998	62367004	62366998	-	High_confidence	5	5	9	0.288937	2.500000	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	128921923	128921961	128921960	+	High_confidence	7	7	15	0.481561	3.521641	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	38825339	38825367	38825360	+	RAMPAGE_only	5	5	17	0.545769	3.969816	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	107181141	107181142	107181141	-	RAMPAGE_only	11	11	14	0.449457	3.546594	chr10	107180752	107181751	DNA|TcMar-Tigger|Tigger3b	-	chr10	106573670	107164739	MSTRG.3857.2	-	106573670,106579090,106579368,106597350,106607165,106611910,106618148,106620427,106629201,106652381,106667688,106671236,106672867,106675048,106677312,106679255,106679631,106688191,106699213,106706544,106709222,106730049,106761587,106776533,106829573,106956512,107163968	106577555,106579251,106579474,106597450,106607297,106612023,106618272,106620561,106629388,106652553,106667802,106671367,106672985,106675156,106677404,106679332,106679734,106688338,106699393,106706634,106709341,106730114,106761661,106776692,106829673,106956580,107164739	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	78977917	78977929	78977917	-	RAMPAGE_only	3	3	9	0.288937	3.169925	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78962394	ZMIZ1-AS1|ENST00000428862.5	-	78943327,78945911,78960504,78961253	78944747,78945989,78960716,78962394	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	58943248	58943312	58943267	+	High_confidence	148	151	805	25.843780	7.094425	chr11	58943109	58943541	LTR|ERV1|MER57A1	+	chr11	58943259	58955656	GLYATL1|ENST00000530774.5	+	58943259,58943542,58947857,58954769,58955175,58955609	58943322,58943666,58947965,58954896,58955353,58955656	0.619876
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	36513735	36513757	36513756	+	High_confidence	4	4	15	0.481561	3.235926	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	28335887	28335925	28335915	-	High_confidence	3	5	19	0.609977	4.142664	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.894737
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	123061128	123061297	123061256	-	High_confidence	70	72	299	9.599118	5.780325	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.949833
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	19344388	19344430	19344388	-	RAMPAGE_only	9	9	41	1.316267	4.387444	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.975610
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	233691673	233691674	233691673	+	RAMPAGE_only	8	8	10	0.321041	3.121928	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233692865	233773305	UGT1A6|NM_001072.3	+	233692865,233767033,233767848,233768219,233772261	233693865,233767165,233767936,233768439,233773305	0.600000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	73072223	73072234	73072223	-	High_confidence	4	5	18	0.577873	3.947703	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.722222
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	48352164	48352165	48352164	+	RAMPAGE_only	5	5	7	0.224729	2.584963	chr16	48352051	48352235	DNA|hAT-Charlie|MER5A	+	chr16	48244295	48357349	LONP2|ENST00000285737.8	+	48244295,48252130,48256609,48258617,48261423,48262777,48270015,48277337,48296014,48299661,48303171,48334215,48347506,48348099,48351580	48244621,48252365,48256741,48258740,48261587,48262872,48270274,48277479,48296165,48299788,48303305,48334358,48347714,48348290,48357349	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	2999185	2999186	2999185	-	High_confidence	10	12	12	0.385249	3.022055	chr6	2999098	2999242	LINE|L1|L1MD2	-	chr6	2989725	2999134	AL133351.1|ENST00000429319.1	-	2989725,2999012	2990011,2999134	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	69859362	69859736	69859459	-	High_confidence	21	23	558	17.914074	6.443874	chr4	69859295	69859439	LINE|L2|L2b	-	chr4	69821283	69859889	MSTRG.21281.3	-	69821283,69838447,69844160,69847697,69849436,69855300,69857499	69832406,69842106,69844341,69847792,69854314,69855426,69859889	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	123260904	123260930	123260904	-	High_confidence	2	2	11	0.353145	2.921928	chr12	123260632	123260962	SINE|Alu|AluJb	+	chr12	123258976	123261219	AC068768.1|ENST00000544890.1	-	123258976,123260273,123260825	123259148,123260503,123261219	0.818182
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	56876122	56876144	56876135	-	RAMPAGE_only	3	4	14	0.449457	3.085055	chr6	56876105	56876750	LINE|L2|L2a	+	chr6	56614463	56851951	DST|ENST00000520645.5	-	56614463,56624529,56625156,56627203,56627998,56629249,56630244,56631210,56631882,56632853,56634131,56634461,56634800,56635588,56636556,56639258,56639449,56639695,56639928,56640142,56641946,56642409,56645865,56646086,56648569,56650925,56651131,56670640,56699652,56701887,56704279,56735227,56851396,56851787	56614484,56624628,56625264,56627287,56628161,56629443,56630383,56631389,56632040,56633037,56634258,56634616,56634953,56635714,56636652,56639363,56639611,56639773,56640057,56640605,56642101,56642503,56645993,56646182,56648689,56651032,56651244,56670807,56699745,56701965,56704369,56735289,56851604,56851951	0.928571
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	56313362	56313363	56313362	-	RAMPAGE_only	5	5	7	0.224729	2.584963	chr19	56313201	56313542	LTR|ERVL-MaLR|THE1B	-	chr19	56221302	56314564	ZSCAN5A|NM_001322075.1	-	56221302,56222590,56223630,56224662,56313282,56314249	56222323,56222741,56223834,56225173,56313384,56314564	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	131635532	131635641	131635596	+	RAMPAGE_only	10	10	50	1.605204	5.143465	chr6	131635632	131635995	LTR|ERV1|PABL_A-int	+	chr6	131637234	131747410	ENPP3|NM_005021.4	+	131637234,131641454,131650026,131652541,131652830,131658322,131671247,131674161,131675079,131676735,131677867,131683053,131685363,131685875,131693496,131718671,131720291,131722226,131724039,131726045,131733587,131737354,131738030,131740223,131746785	131637462,131641530,131650149,131652667,131652891,131658420,131671327,131674281,131675189,131676801,131677940,131683162,131685495,131685907,131693624,131718738,131720379,131722405,131724091,131726200,131733723,131737432,131738163,131740380,131747410	0.780000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	80485592	80485655	80485592	+	High_confidence	15	16	48	1.540996	5.261842	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.645833
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	38789812	38789830	38789812	-	RAMPAGE_only	9	10	16	0.513665	2.866248	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	0.937500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	35467057	35467081	35467080	-	High_confidence	2	2	8	0.256833	2.807355	chr18	35467057	35467118	DNA|hAT-Charlie|MER5A	-	chr18	35445742	35467081	AC007998.3|ENST00000591141.1	-	35445742,35446874,35466623	35445900,35446955,35467081	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	177390481	177390482	177390481	+	High_confidence	9	9	10	0.321041	3.169925	chr5	177390389	177390552	SINE|MIR|MIRb	-	chr5	177389646	177398840	MSTRG.23430.7	+	177389646,177390586,177393693,177394027,177396732,177396949	177390484,177390792,177393763,177394195,177396849,177398840	0.900000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	6820197	6820198	6820197	+	RAMPAGE_only	5	6	7	0.224729	2.584963	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	36481313	36481346	36481334	-	High_confidence	25	26	52	1.669412	4.387606	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.846154
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	62367047	62367072	62367056	-	High_confidence	4	5	18	0.577873	3.175123	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.944444
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	48492537	48492554	48492537	-	High_confidence	4	4	9	0.288937	3.000000	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	67183549	67183575	67183549	-	High_confidence	5	5	29	0.931018	4.014147	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.896552
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	79455191	79455231	79455230	+	RAMPAGE_only	4	4	20	0.642081	3.405822	chr7	79455163	79455401	SINE|MIR|MIRb	+	chr7	79454011	79471048	MAGI2-AS3|ENST00000448195.5	+	79454011,79454885,79458846,79470782	79454244,79455007,79458999,79471048	0.850000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	113454739	113454752	113454751	+	RAMPAGE_only	4	4	8	0.256833	2.521641	chr2	113454787	113454885	LINE|L1|L1MC5	+	chr2	113468584	113496119	CBWD2|ENST00000479583.5	+	113468584,113482176,113493756,113493928,113495119,113495636	113471089,113482228,113493825,113493994,113495249,113496119	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	23403961	23403969	23403968	-	RAMPAGE_only	4	7	14	0.449457	3.392747	chr16	23403943	23404101	DNA|hAT-Charlie|MER5A	+	chr16	23388640	23393581	COG7|ENST00000566364.1	-	23388640,23392379,23393232	23389086,23392523,23393581	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	67183453	67183493	67183466	-	High_confidence	3	3	16	0.513665	3.640224	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.812500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	98943539	98943576	98943575	+	High_confidence	9	10	33	1.059434	4.366681	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	5809580	5809596	5809580	+	RAMPAGE_only	3	3	9	0.288937	2.500000	chr4	5809619	5809815	SINE|MIR|MIR3	+	chr4	5793513	5832302	MSTRG.20889.7	+	5793513,5797021,5798585,5801949,5804729,5808200,5809517,5810338,5810955,5818210	5793717,5797232,5798792,5802094,5804841,5808327,5809611,5810450,5814162,5832302	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	126327874	126327896	126327895	+	High_confidence	2	2	7	0.224729	2.521641	chr11	126327772	126328221	LINE|L2|L2a	-	chr11	126327865	126345754	DCPS|ENST00000648516.1	+	126327865,126328744,126330193,126331404,126338285,126343306,126345346	126328057,126328888,126330436,126331550,126338399,126343417,126345754	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	99350178	99350246	99350224	+	RAMPAGE_only	33	36	111	3.563552	4.503915	chr8	99350198	99350622	LINE|L2|L2b	-	chr8	99389615	99442411	VPS13B|ENST00000521037.1	+	99389615,99391556,99429569,99431520,99442400	99389720,99391704,99429647,99431664,99442411	0.756757
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	123163305	123163321	123163320	-	High_confidence	7	7	19	0.609977	3.326360	chr12	123163206	123163336	LINE|L1|L1ME4a	-	chr12	123161267	123163400	MPHOSPH9|ENST00000536198.1	-	123161267,123162114,123163013	123161383,123162218,123163400	0.578947
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	40657076	40657098	40657076	+	RAMPAGE_only	2	2	8	0.256833	3.000000	chr15	40657015	40657149	LINE|L2|L2	+	chr15	40623131	40664339	KNL1|ENST00000526913.5	+	40623131,40628069,40628610,40629272,40640911,40644996,40645655,40646986,40650300,40650543,40651470,40652004,40654908,40657041,40657354,40659338,40662073,40663334	40625640,40628208,40628678,40629371,40641027,40645087,40645772,40647074,40650378,40650583,40651572,40652105,40654977,40657151,40657473,40659461,40662683,40664339	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	22717935	22717938	22717935	-	High_confidence	11	11	24	0.770498	4.001823	chr6	22717913	22718256	DNA|hAT-Ac|OldhAT1	-	chr6	22654159	22717924	LOC105374972|NR_134613.1	-	22654159,22717720	22654704,22717924	0.541667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	70676509	70676547	70676509	-	RAMPAGE_only	2	3	16	0.513665	3.750000	chr15	70676255	70676461	SINE|MIR|MIRb	-	chr15	70669093	70671973	UACA|ENST00000559290.1	-	70669093,70671038	70669462,70671973	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	165576491	165576531	165576530	-	High_confidence	3	3	8	0.256833	3.000000	chr6	165576342	165576862	LINE|L2|L2	+	chr6	165333024	165576448	PDE10A|ENST00000650117.1	-	165333024,165336122,165339277,165343390,165379193,165388297,165392645,165395180,165396316,165413500,165416188,165418634,165428657,165430286,165431421,165432973,165435236,165448927,165450241,165482314,165543439,165576411	165333127,165336211,165339358,165343502,165379366,165388453,165392796,165395264,165396459,165413687,165416281,165418777,165428709,165430345,165431472,165433129,165435377,165448977,165450362,165482343,165543568,165576448	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	118139096	118139097	118139096	+	High_confidence	6	6	6	0.192624	2.584963	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	74199385	74199405	74199404	+	High_confidence	14	14	24	0.770498	3.970573	chr8	74199086	74199513	LINE|L2|L2a	+	chr8	74199395	74208441	AC087627.1|ENST00000522339.2	+	74199395,74207358,74207720	74199532,74207493,74208441	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	119875258	119875279	119875268	+	RAMPAGE_only	3	4	9	0.288937	3.000000	chr8	119875180	119875337	LTR|ERV1|LTR7	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	23338693	23338733	23338732	-	RAMPAGE_only	5	5	17	0.545769	3.500000	chr19	23337372	23338771	LINE|L1|L1M2	+	chr19	23337830	23340137	ZNF91|ENST00000597458.1	-	23337830	23340137	0.882353
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	142000372	142000373	142000372	-	High_confidence	7	7	7	0.224729	2.807355	chr3	142000176	142000536	LTR|ERVL-MaLR|MLT1A0	-	chr3	141944427	142000387	TFDP2|NM_001178140.1	-	141944427,141952910,141959673,141963811,141970072,141974047,141978519,141993537,141995019,142000251	141952696,141953016,141959840,141963963,141970141,141974191,141978682,141993585,141995141,142000387	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	9973638	9973659	9973638	-	RAMPAGE_only	4	4	9	0.288937	3.000000	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	169115320	169115349	169115346	-	RAMPAGE_only	3	4	14	0.449457	3.546594	chr4	169115255	169115782	DNA|hAT-Charlie|MER1A	+	chr4	169094255	169271098	SH3RF1|NM_020870.3	-	169094255,169106846,169116268,169117522,169120818,169122099,169130045,169136317,169155479,169156403,169268819,169270858	169096687,169107205,169116630,169117782,169120989,169122266,169130156,169136620,169155575,169156679,169269307,169271098	0.785714
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	103181328	103181329	103181328	-	RAMPAGE_only	84	84	91	2.921471	5.452862	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.659341
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	45292684	45292693	45292685	+	High_confidence	10	16	29	0.931018	4.106377	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.896552
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	185959715	185959748	185959747	+	High_confidence	10	12	25	0.802602	3.970176	chr3	185959492	185959826	SINE|Alu|AluSq2	+	chr3	185959961	185975198	NMRAL2P|ENST00000422108.5	+	185959961,185968478,185971614,185975165	185960078,185968649,185971864,185975198	0.720000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	25162764	25162778	25162777	-	RAMPAGE_only	4	4	8	0.256833	2.521641	chr5	25162542	25163246	LTR|ERV1|LTR30	+	chr5	25101017	25190956	LINC02228|ENST00000641261.2	-	25101017,25136341,25162229,25167161,25190446	25103121,25136445,25162269,25167191,25190956	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	132675338	132675353	132675338	-	High_confidence	6	6	29	0.931018	4.651084	chr8	132675252	132675288	SINE|MIR|MIRb	-	chr8	132570418	132675441	LRRC6|NM_001321965.1	-	132570418,132583693,132610165,132611293,132615037,132622610,132625271,132632739,132637934,132643373,132656829,132661459,132674557	132572480,132583779,132610261,132611363,132615097,132622688,132625454,132632963,132638107,132643686,132656907,132661627,132675441	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	659659	659714	659713	+	RAMPAGE_only	7	8	51	1.637308	4.138331	chr18	659744	659794	LINE|L2|L2a	+	chr18	657742	673484	TYMS|ENST00000323224.7	+	657742,659640,662145,670691,671379,672859	657947,659714,662320,670867,671451,673484	0.941176
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	63687931	63687953	63687950	-	RAMPAGE_only	3	3	9	0.288937	3.000000	chr5	63687632	63688889	LTR|ERV1|PABL_B-int	-	chr5	63683329	63690706	MSTRG.22406.1	-	63683329,63690278	63687654,63690706	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	85682862	85682888	85682862	-	RAMPAGE_only	8	15	25	0.802602	4.168296	chr11	85682520	85682971	DNA|hAT-Tip100|MER115	+	chr11	85657563	85665138	CREBZF|NR_028025.1	-	85657563,85663523,85663814	85662457,85663601,85665138	0.520000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	11795959	11796010	11795986	+	High_confidence	30	30	92	2.953575	5.924969	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.630435
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	4143196	4143215	4143199	+	High_confidence	212	214	463	14.864187	5.898099	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.978402
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	98733157	98733265	98733221	+	High_confidence	9	12	66	2.118869	5.413633	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.696970
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	154924482	154924497	154924496	-	RAMPAGE_only	3	4	9	0.288937	2.750000	chr5	154924406	154924453	DNA|hAT-Charlie|MER30	-	chr5	154891433	154936357	MSTRG.23262.3	-	154891433,154892386,154896091,154898439,154899190,154901338,154902538,154903079,154904506,154905362,154907590,154911726,154912898,154916997,154917930,154919966,154921342,154924468,154925861,154927384,154928526,154931457,154932098,154935840	154891742,154892549,154896343,154898650,154899310,154901486,154902676,154903175,154904629,154905476,154907818,154911898,154913038,154917179,154918004,154920103,154921425,154924554,154926074,154927550,154928659,154931574,154932250,154936357	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	24919646	24919673	24919658	+	RAMPAGE_only	4	4	16	0.513665	3.875000	chr15	24919446	24919852	LTR|ERV1|MER31A	-	chr15	24954892	24978723	SNURF|NM_005678.4	+	24954892,24962113,24967931,24974310,24975357,24976304,24976876,24977777,24978192,24978406	24955062,24962209,24968082,24974456,24975509,24976416,24977029,24977916,24978318,24978723	0.812500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	79393597	79393633	79393597	-	RAMPAGE_only	2	2	13	0.417353	3.418296	chr13	79393527	79394632	LTR|ERV1|MER50-int	+	chr13	79392627	79404133	MSTRG.7709.1	-	79392627	79404133	0.615385
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	118647768	118647829	118647768	+	RAMPAGE_only	5	8	27	0.866810	4.680813	chr11	118647666	118647768	SINE|MIR|MIRb	-	chr11	118646333	118657152	PHLDB1|ENST00000526537.2	+	118646333,118650076,118650444,118655604,118656682	118648076,118650193,118650547,118655690,118657152	0.925926
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	143018394	143018434	143018394	-	High_confidence	20	23	100	3.210407	5.693919	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.690000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	59216886	59216912	59216911	-	High_confidence	4	4	10	0.321041	3.121928	chr5	59216768	59217041	LINE|L2|L2c	+	chr5	59180592	59216826	PDE4D|ENST00000638939.1	-	59180592,59185188,59193499,59215776,59216743,59216817	59180644,59185262,59193536,59215968,59216754,59216826	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	28434103	28434104	28434103	+	RAMPAGE_only	10	10	12	0.385249	3.277613	chr7	28434122	28434254	SINE|MIR|MIRb	+	chr7	28435614	28820000	CREB5|ENST00000396300.6	+	28435614,28488174,28494905,28507615,28570364,28718752,28724221,28804198,28809186,28818070,28819115	28435688,28488246,28494999,28507737,28570537,28718879,28724332,28804522,28809414,28818179,28820000	0.583333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	73272240	73272248	73272240	+	High_confidence	4	4	8	0.256833	2.750000	chr11	73272218	73272327	SINE|MIR|MIRc	+	chr11	73272201	73298617	P2RY6|ENST00000393590.2	+	73272201,73296484	73272466,73298617	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	43078349	43078351	43078349	+	RAMPAGE_only	5	10	10	0.321041	3.321928	chr13	43078274	43078372	SINE|MIR|MIR3	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	33021454	33021456	33021454	-	RAMPAGE_only	7	12	13	0.417353	2.855389	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	78225188	78225191	78225190	+	RAMPAGE_only	5	7	9	0.288937	2.503258	chr1	78225094	78225460	LTR|ERVL|ERVL-E-int	-	chr1	78229598	78293890	MGC27382|ENST00000436742.5	+	78229598,78250183,78251493,78292479,78293078,78293590	78229729,78251010,78251877,78292631,78293277,78293890	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	50300788	50300814	50300791	-	High_confidence	2	2	8	0.256833	2.521641	chr15	50300429	50300744	SINE|Alu|AluSx	-	chr15	50278541	50301315	GABPB1|ENST00000561010.5	-	50278541,50282278,50286067,50289482,50300788,50301220	50278784,50282391,50286183,50289668,50300902,50301315	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	195689386	195689422	195689406	+	High_confidence	8	9	16	0.513665	3.323231	chr3	195689376	195689522	LINE|L1|L1MC5a	+	chr3	195689424	195696554	MUC20-OT1|ENST00000626677.1	+	195689424,195696360	195689608,195696554	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	761110	761127	761110	+	High_confidence	7	7	32	1.027330	3.739572	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.906250
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	110330098	110330113	110330110	-	RAMPAGE_only	5	5	16	0.513665	3.875000	chr6	110329832	110331376	LINE|L1|L1MD2	+	chr6	110245927	110358272	METTL24|ENST00000338882.4	-	110245927,110298921,110315341,110322773,110357954	110246260,110299150,110315481,110322872,110358272	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	18170461	18170476	18170461	+	High_confidence	6	6	21	0.674186	4.142664	chr8	18170361	18170677	LTR|ERV1|MER57C1	+	chr8	18170461	18223689	NAT1|NM_001291962.1	+	18170461,18170678,18209780,18216876,18219410,18222041	18170507,18170739,18209955,18216994,18219489,18223689	0.619048
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	129488756	129488905	129488856	+	High_confidence	28	28	137	4.398258	5.328696	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.963504
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	62376800	62376801	62376800	-	High_confidence	6	6	8	0.256833	2.500000	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	9567531	9567545	9567544	+	RAMPAGE_only	9	9	29	0.931018	2.901807	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9557313	9576275	AC092821.1|ENST00000520314.2	+	9557313,9558368,9559174,9560109,9560816,9565091,9567489,9570765,9571460,9573002,9573465,9574846	9557580,9558452,9559348,9560191,9564325,9565303,9569202,9570892,9571573,9573093,9573534,9576275	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	67387433	67387468	67387433	-	RAMPAGE_only	18	20	95	3.049887	4.654522	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.768421
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	41359606	41359607	41359606	+	High_confidence	160	169	192	6.163982	5.938028	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.635417
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	10271555	10271576	10271575	+	RAMPAGE_only	3	4	8	0.256833	2.807355	chr1	10271619	10271796	DNA|hAT-Charlie|MER58A	+	chr1	10232328	10381596	KIF1B|ENST00000620295.2	+	10232328,10256246,10258492,10261904,10267379,10268151,10271501,10272240,10273013,10275427,10276320,10277985,10282321,10291081,10292046,10295085,10295659,10296581,10296896,10297173,10320042,10321708,10323883,10324757,10326110,10334519,10336656,10337073,10337370,10339768,10342049,10343231,10345844,10347760,10348648,10352630,10360928,10361691,10363282,10365099,10365408,10368466,10371140,10374315,10374853,10375254,10378338	10232434,10256323,10258672,10261970,10267558,10268263,10271579,10272306,10273031,10275503,10276399,10278128,10282533,10291161,10292122,10295165,10295766,10296665,10297077,10297246,10320136,10321857,10324062,10324895,10326359,10334638,10336742,10337203,10337533,10339859,10342168,10343287,10345953,10347827,10348733,10352736,10361043,10361825,10363344,10365245,10365648,10368538,10371262,10374465,10375046,10375373,10381596	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	64620606	64620627	64620606	-	RAMPAGE_only	7	7	12	0.385249	3.027169	chr11	64620584	64620687	SINE|tRNA-Deu|AmnSINE2	-	chr11	64606173	64623996	NRXN2|ENST00000464307.5	-	64606173,64620293,64622752	64608082,64620372,64623996	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	43013392	43013393	43013392	-	High_confidence	23	23	29	0.931018	4.556088	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	79989808	79989841	79989818	+	RAMPAGE_only	9	13	44	1.412579	5.036616	chr9	79989802	79989919	LINE|L1|L1MC5a	-	chr9	79975022	80034555	LINC01507|NR_121212.1	+	79975022,79975553,79989956,80030583,80034300	79975222,79975831,79990064,80030769,80034555	0.931818
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	99116622	99116628	99116627	+	RAMPAGE_only	3	3	7	0.224729	2.807355	chr4	99114079	99117819	LINE|L1|L1P1	-	chr4	99088856	99301356	LOC100507053|NR_037884.1	+	99088856,99133554,99154544,99204356,99286794,99288665,99290936,99300298,99300468,99300950	99089284,99133805,99157579,99204431,99287033,99288785,99290948,99300370,99300655,99301356	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	28090231	28090232	28090231	+	High_confidence	7	7	9	0.288937	2.947703	chr8	28089941	28090482	LTR|ERVL|LTR66	+	chr8	28090230	28191156	ELP3|ENST00000521015.5	+	28090230,28097218,28099827,28106712,28107912,28110369,28113018,28129501,28132277,28137697,28155941,28158567,28160228,28161996,28189648	28090332,28097318,28099966,28106783,28107976,28110438,28113173,28129663,28132404,28137891,28156032,28158633,28160456,28162078,28191156	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	70100660	70100711	70100660	+	RAMPAGE_only	13	13	50	1.605204	5.038563	chr17	70100541	70100738	SINE|MIR|MIR	-	chr17	70103324	70135603	MSTRG.13024.8	+	70103324,70108300,70124558,70130878,70131994	70106788,70108381,70124612,70130975,70135603	0.960000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	232845838	232845839	232845838	+	RAMPAGE_only	5	5	8	0.256833	2.521641	chr2	232845876	232846546	LINE|CR1|L3	+	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	50387647	50387655	50387647	+	RAMPAGE_only	5	6	9	0.288937	3.000000	chr22	50387583	50387737	DNA|hAT-Blackjack|MER63B	-	chr22	50372071	50444391	PPP6R2|ENST00000216061.9	+	50372071,50388985,50391866,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50436987,50437505,50437842,50438173,50438598,50439700,50439960,50440800,50443865,50444198	50372150,50389111,50392015,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437068,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50444391	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	40209145	40209165	40209164	+	High_confidence	4	4	12	0.385249	3.584963	chr2	40208967	40209664	LINE|L2|L2a	-	chr2	40209964	40255058	SLC8A1-AS1|ENST00000427354.5	+	40209964,40251683,40254419	40210024,40251774,40255058	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	36001986	36002027	36001986	-	High_confidence	2	2	9	0.288937	2.947703	chr17	36001935	36002541	LTR|ERV1|MER50	-	chr17	35997581	36002038	CCL15|NM_032965.5	-	35997581,35998279,35998865,36001416	35997860,35998391,35998925,36002038	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	138170346	138170363	138170346	-	RAMPAGE_only	3	5	11	0.353145	2.721928	chr5	138170278	138170360	DNA|hAT-Ac|OldhAT1	+	chr5	138156881	138177667	BRD8|ENST00000441656.5	-	138156881,138160068,138160890,138161795,138162053,138163129,138164086,138164319,138164713,138165827,138167933,138168469,138169221,138170344,138170831,138171037,138171360,138172064,138177570	138157267,138160173,138161068,138161864,138162146,138163344,138164133,138164413,138165166,138166108,138168078,138168688,138169349,138170409,138170912,138171160,138171410,138172134,138177667	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	117454948	117454953	117454949	+	High_confidence	15	28	48	1.540996	5.055958	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.687500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	45833251	45833252	45833251	-	High_confidence	16	16	16	0.513665	3.452820	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	151017874	151017898	151017874	+	RAMPAGE_only	2	2	7	0.224729	2.807355	chr1	151017915	151018141	SINE|MIR|MIRc	+	chr1	151024741	151035711	PRUNE1|ENST00000368934.1	+	151024741,151025514,151027232,151033805	151024795,151025673,151027327,151035711	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	42980432	42980475	42980432	-	High_confidence	3	3	11	0.353145	2.845351	chr17	42980326	42980440	LINE|L2|L2a	+	chr17	42968103	42980433	PTGES3L|ENST00000409446.7	-	42968103,42970288,42971606,42979169,42979377,42980045	42969186,42970342,42971696,42979268,42979444,42980433	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	44912628	44912629	44912628	-	High_confidence	6	6	8	0.256833	2.807355	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	18794063	18794086	18794085	+	High_confidence	32	32	109	3.499344	5.555543	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.981651
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	55982789	55982804	55982799	-	High_confidence	10	10	24	0.770498	4.084963	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.916667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	84172094	84172104	84172094	-	High_confidence	24	26	36	1.155747	4.794653	chr10	84171986	84172465	LTR|ERV1|LTR2B	-	chr10	84167227	84172093	CERNA2|ENST00000647830.1	-	84167227,84171721	84168729,84172093	0.638889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	54296683	54296742	54296697	+	RAMPAGE_only	7	7	24	0.770498	3.573935	chr4	54296613	54296722	DNA|hAT-Charlie|MER5B	-	chr4	54229096	54298247	PDGFRA|ENST00000257290.9	+	54229096,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54280315,54285370,54285840,54287429,54288798,54289008,54290312,54295124	54229415,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54280482,54285486,54285963,54287541,54288898,54289114,54290554,54298247	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	50541362	50541389	50541388	+	RAMPAGE_only	4	4	10	0.321041	3.321928	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	23417904	23417918	23417911	-	RAMPAGE_only	3	3	14	0.449457	3.392747	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.928571
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	43162866	43162883	43162866	-	RAMPAGE_only	2	2	6	0.192624	2.584963	chr17	43160720	43165886	LTR|ERV1|Harlequin-int	-	chr17	43160289	43170403	AC060780.1|ENST00000590740.2	-	43160289,43166979,43170125	43164812,43167262,43170403	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	11507485	11507499	11507491	-	RAMPAGE_only	3	3	8	0.256833	2.521641	chr19	11507282	11507445	SINE|Alu|FRAM	-	chr19	11505957	11513168	ECSIT|ENST00000592571.1	-	11505957,11507456,11507701,11507990,11510616,11513055	11506428,11507562,11507850,11508048,11510660,11513168	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	21551266	21551289	21551266	+	High_confidence	39	43	165	5.297172	5.561720	chr1	21551216	21551436	LINE|L2|L2c	-	chr1	21551278	21578012	ALPL|ENST00000374832.5	+	21551278,21553977,21560625,21561096,21563109,21564040,21568103,21570304,21573664,21575732,21576521,21577382	21551428,21554142,21560745,21561212,21563284,21564216,21568247,21570374,21573799,21575924,21576641,21578012	0.945455
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	176943347	176943356	176943347	-	RAMPAGE_only	2	2	7	0.224729	2.584963	chr5	176943235	176943320	DNA|hAT-Charlie|Charlie10	-	chr5	176905065	176970793	UIMC1|ENST00000510698.2	-	176905065,176906010,176907113,176908522,176911310,176943334,176951473,176955958,176958092,176969600,176970741	176905492,176906047,176907177,176908694,176911389,176943488,176951577,176956035,176958154,176969706,176970793	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	204544985	204544986	204544985	+	High_confidence	8	8	12	0.385249	2.855389	chr2	204544936	204545029	SINE|MIR|MIR3	+	chr2	204545792	205048595	PARD3B|ENST00000415947.1	+	204545792,204686180,204965151,205047580	204546171,204686282,204965323,205048595	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	43417289	43417311	43417289	-	RAMPAGE_only	6	6	21	0.674186	3.646439	chr3	43417045	43417666	LTR|ERV1|LTR9	+	chr3	43366347	43621965	ANO10|ENST00000350459.8	-	43366347,43432610,43549719,43555277,43561219,43565652,43574808,43580352,43598531,43600383,43605713,43621908	43366974,43432727,43549848,43555469,43561402,43565727,43574864,43580472,43598666,43600581,43605863,43621965	0.904762
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	883775	883830	883829	+	RAMPAGE_only	6	6	24	0.770498	4.251629	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	753055	907956	MSTRG.5707.7	+	753055,813641,827041,830002,857160,859244,861012,862082,871264,878211,880720,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846	754324,813814,827262,830160,857249,859464,861343,862270,871348,878361,880999,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,907956	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	39083007	39083067	39083065	+	RAMPAGE_only	7	10	30	0.963122	4.323231	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.733333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	128473687	128473739	128473687	+	RAMPAGE_only	2	3	14	0.449457	3.235926	chr9	128473736	128473912	SINE|MIR|MIRb	+	chr9	128460558	128500255	ODF2|ENST00000444119.6	+	128460558,128460941,128469182,128471307,128472912,128473609,128481579,128482815,128483937,128484700,128485364,128487889,128492425,128492700,128494509,128496040,128498412,128499000,128500066	128460666,128461010,128469353,128471468,128473042,128473741,128481651,128482887,128484054,128484886,128485474,128488025,128492536,128492805,128494668,128496141,128498575,128499126,128500255	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	152082431	152082466	152082465	+	RAMPAGE_only	14	16	48	1.540996	5.219214	chr7	152082186	152082768	LTR|ERV1|LTR10C	-	chr7	152079274	152104891	GALNT11|ENST00000422997.6	+	152079274,152094189,152100797,152103111	152079408,152094522,152100921,152104891	0.791667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	63590999	63591030	63590999	-	RAMPAGE_only	3	3	10	0.321041	2.947703	chr12	63590951	63591233	LINE|CR1|L3	-	chr12	63560195	63668542	MSTRG.6573.3	-	63560195,63569223,63570757,63580661,63582405,63583811,63594086,63595965,63597808,63600305,63608615,63617303,63618150,63621237,63626468,63644402,63647244,63661343,63663757,63665834,63668056	63560662,63569349,63570857,63580836,63582525,63591127,63594133,63596037,63597910,63600386,63608675,63617390,63618228,63621337,63626526,63644496,63647365,63661481,63663845,63665859,63668542	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	227164787	227164811	227164809	-	High_confidence	3	4	9	0.288937	3.000000	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227002710	227164559	COL4A4|NM_000092.4	-	227002710,227008017,227010312,227012180,227022047,227025801,227027901,227030442,227031944,227032147,227033409,227042147,227043076,227047474,227050067,227050976,227052304,227054593,227055944,227057438,227059404,227060135,227062529,227077893,227080442,227082114,227088652,227089867,227094124,227098693,227099619,227101503,227101864,227102788,227103143,227103971,227108580,227108832,227109223,227111677,227114627,227118644,227119894,227121013,227140160,227144515,227147412,227164006	227007588,227008304,227010501,227012297,227022173,227025810,227028009,227030598,227032055,227032276,227033481,227042255,227043184,227047549,227050131,227051158,227052412,227054737,227056115,227057600,227059623,227060243,227062598,227078077,227080549,227082187,227088816,227089957,227094289,227098798,227099689,227101557,227101909,227102848,227103197,227104052,227108622,227108868,227109286,227111713,227114696,227118761,227119939,227121148,227140238,227144558,227147584,227164559	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	112219334	112219335	112219334	+	RAMPAGE_only	13	13	13	0.417353	3.700440	chr5	112219140	112219503	LTR|ERVL-MaLR|THE1D	+	chr5	112228282	112257309	AC104126.1|ENST00000504004.1	+	112228282,112249597,112250614,112256862	112228352,112249632,112250773,112257309	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	28434150	28434166	28434161	+	RAMPAGE_only	7	8	27	0.866810	4.053661	chr7	28434122	28434254	SINE|MIR|MIRb	+	chr7	28435614	28820000	CREB5|ENST00000396300.6	+	28435614,28488174,28494905,28507615,28570364,28718752,28724221,28804198,28809186,28818070,28819115	28435688,28488246,28494999,28507737,28570537,28718879,28724332,28804522,28809414,28818179,28820000	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	41757429	41757457	41757429	-	RAMPAGE_only	5	10	34	1.091539	3.468139	chr17	41757254	41757383	DNA|hAT-Tip100|MER91B	-	chr17	41754603	41785155	JUP|ENST00000393930.5	-	41754603,41755729,41756174,41757414,41757633,41758398,41758714,41762982,41764712,41764922,41767378,41768968,41769417,41771646,41784946	41755432,41755895,41756214,41757536,41757784,41758518,41758870,41763321,41764816,41765067,41767580,41769207,41769677,41771862,41785155	0.941176
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	26395705	26395706	26395705	+	High_confidence	8	8	8	0.256833	2.500000	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	33141885	33141899	33141885	-	RAMPAGE_only	1	1	8	0.256833	2.807355	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33141430	33161491	CSTF3|NM_001033505.1	-	33141430,33141884,33161298	33141762,33141986,33161491	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	54865519	54865520	54865519	-	RAMPAGE_only	11	13	14	0.449457	3.546594	chr1	54865506	54865684	SINE|MIR|MIRc	-	chr1	54852366	54886836	DHCR24|ENST00000647585.1	-	54852366,54853433,54854036,54865302,54871349,54875092,54875941,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54883773,54886836	0.785714
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	65887617	65887624	65887617	-	High_confidence	3	5	11	0.353145	2.845351	chr11	65887463	65887575	LINE|L2|L2	-	chr11	65884934	65888436	FIBP|ENST00000532229.1	-	65884934,65885077,65885508,65887599,65887933,65888333	65884998,65885186,65885663,65887726,65888132,65888436	0.636364
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	31538150	31538164	31538163	+	High_confidence	23	23	37	1.187851	4.068728	chr5	31537737	31538167	LTR|ERVL-MaLR|MLT1J	-	chr5	31538172	31545714	C5orf22|ENST00000510530.1	+	31538172,31540948,31541280,31545645	31538689,31541011,31541402,31545714	0.891892
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	71745875	71745938	71745875	+	High_confidence	5	5	36	1.155747	4.514718	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.972222
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	76041147	76041224	76041223	+	High_confidence	39	43	209	6.709752	5.826547	chr1	76041086	76041403	SINE|Alu|AluSq2	-	chr1	76041690	76066228	AC092813.2|ENST00000434540.1	+	76041690,76066037	76041898,76066228	0.665072
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100906104	100906117	100906104	+	High_confidence	2	2	7	0.224729	2.584963	chr14	100905713	100906123	LINE|L1|L1MC5	-	chr14	100906043	100947076	MSTRG.8784.60	+	100906043,100906935,100913431,100935771,100938879,100940364,100942761,100944808,100947033	100906163,100910304,100913521,100937488,100938956,100940450,100942838,100944925,100947076	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	181954472	181954511	181954484	+	High_confidence	2	2	12	0.385249	3.277613	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	208824085	208824118	208824093	+	RAMPAGE_only	3	4	22	0.706290	3.584184	chr2	208824105	208824501	LTR|ERVL|ERVL-E-int	+	chr2	208542641	208825587	LOC101927960|NR_136588.1	+	208542641,208572012,208656825,208819551,208824194,208825398	208542991,208572167,208656989,208819655,208824350,208825587	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	38515496	38515515	38515496	-	High_confidence	2	2	9	0.288937	2.750000	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	2376134	2376188	2376165	+	High_confidence	13	14	56	1.797828	5.047903	chr11	2376100	2376285	DNA|hAT-Charlie|MER3	-	chr11	2376176	2397419	CD81|NM_001297649.1	+	2376176,2390411,2394094,2394971,2395415,2395868,2396627,2396803	2376357,2390526,2394192,2395046,2395520,2395970,2396714,2397419	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	571754	571792	571754	-	High_confidence	6	7	19	0.609977	3.572431	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.684211
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	88545479	88545513	88545512	-	RAMPAGE_only	4	4	8	0.256833	3.000000	chr10	88545305	88545664	LTR|ERVL-MaLR|THE1B	-	chr10	88284958	88583213	RNLS|ENST00000331772.8	-	88284958,88314465,88362551,88572902,88581566,88582201,88583072	88285506,88314641,88362725,88573061,88581709,88582307,88583213	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	143070999	143071000	143070999	+	RAMPAGE_only	5	5	8	0.256833	2.521641	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143091361	143238352	ARHGAP15|ENST00000409869.5	+	143091361,143092156,143155476,143202133,143216383,143228580,143235945	143091422,143092258,143155655,143202202,143216445,143228668,143238352	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	180692092	180692134	180692133	+	High_confidence	5	5	14	0.449457	3.378783	chr2	180691204	180692425	LTR|ERV1|LTR12C	+	chr2	180692103	180916939	SCHLAP1|NR_104322.1	+	180692103,180724595,180725190,180823932,180827240,180899649,180916272	180692441,180724690,180725291,180824070,180827507,180899718,180916939	0.928571
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	5822528	5822566	5822528	+	RAMPAGE_only	8	8	15	0.481561	3.521641	chr4	5822555	5822645	LINE|L2|L2a	+	chr4	5793513	5832302	MSTRG.20889.7	+	5793513,5797021,5798585,5801949,5804729,5808200,5809517,5810338,5810955,5818210	5793717,5797232,5798792,5802094,5804841,5808327,5809611,5810450,5814162,5832302	0.933333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	6590262	6590293	6590269	+	High_confidence	8	8	46	1.476787	4.420195	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.978261
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	114059157	114059168	114059157	-	High_confidence	5	6	20	0.642081	4.037401	chrX	114059021	114059467	LTR|ERV1|LTR2	-	chrX	113961710	114059289	XACT|ENST00000649506.1	-	113961710,114042367,114059003	113963599,114042484,114059289	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	101220685	101220705	101220685	-	RAMPAGE_only	3	3	8	0.256833	3.000000	chr15	101220464	101221194	LINE|L2|L2a	+	chr15	101177100	101235147	CHSY1|ENST00000543813.2	-	101177100,101187992,101235081	101178980,101188219,101235147	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	85378112	85378113	85378112	-	High_confidence	16	16	16	0.513665	3.452820	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	58306116	58306147	58306146	+	High_confidence	4	4	14	0.449457	3.235926	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	34536109	34536134	34536109	-	High_confidence	9	9	22	0.706290	4.186704	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.772727
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	95652350	95652363	95652362	+	RAMPAGE_only	8	8	27	0.866810	4.469670	chr14	95651754	95652375	LTR|ERV1|LTR24C	-	chr14	95650497	95671560	TCL6|ENST00000357168.6	+	95650497,95652044,95652376,95654508,95662479,95663255,95669550,95670441,95671334	95651029,95652226,95652489,95654626,95662664,95663635,95669617,95670577,95671560	0.629630
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	167937125	167937206	167937133	+	High_confidence	4	4	21	0.674186	3.630413	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167937152	167993330	DCAF6|ENST00000455334.5	+	167937152,167951799,167966628,167974829,167987494,167991203,167993225	167937252,167951861,167966721,167975015,167987608,167991339,167993330	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	2727243	2727272	2727247	+	High_confidence	13	13	62	1.990453	5.188234	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.887097
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	85851732	85851755	85851732	+	RAMPAGE_only	2	2	6	0.192624	2.584963	chr3	85851723	85851918	LINE|L2|L2	-	chr3	85726481	86066783	CADM2|ENST00000405615.2	+	85726481,85802046,85883290,85886189,85912372,85935766,85961468,85979163,86065604,86066664	85726548,85802196,85883443,85886327,85912543,85935857,85961647,85979283,86065730,86066783	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	27612566	27612577	27612576	+	High_confidence	3434	3442	5105	163.891302	7.410085	chr14	27612284	27612881	LTR|ERVL|LTR66	+	chr14	27612587	27639636	LINC00645|NR_039992.2	+	27612587,27613420,27619822,27634243,27636419	27612677,27613496,27619873,27634344,27639636	0.795495
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	38811448	38811449	38811448	-	High_confidence	16	16	24	0.770498	3.605327	chr17	38811253	38811561	SINE|Alu|AluY	+	chr17	38802839	38810595	CWC25|ENST00000619462.4	-	38802839,38806296,38806764,38809701,38810275,38810467	38802861,38806395,38806976,38809765,38810400,38810595	0.541667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	80115068	80115069	80115068	+	RAMPAGE_only	8	8	8	0.256833	2.500000	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	379424	379425	379424	+	High_confidence	5	5	8	0.256833	2.750000	chr7	379458	379515	SINE|MIR|MIRc	+	chr7	379424	382879	LOC442497|NR_033960.1	+	379424,380417,380848	379543,380514,382879	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	89404621	89404654	89404653	+	RAMPAGE_only	15	16	38	1.219955	4.314334	chr10	89404680	89404972	SINE|Alu|AluJb	+	chr10	89392545	89406487	IFIT1|NM_001270930.1	+	89392545,89393106,89402280	89392717,89393341,89406487	0.947368
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	72135706	72135725	72135708	+	High_confidence	7	10	20	0.642081	3.921928	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	0.950000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	30272156	30272157	30272156	-	RAMPAGE_only	17	20	25	0.802602	4.293661	chr16	30272015	30272267	LINE|L2|L2b	+	chr16	30267552	30335054	SMG1P5|ENST00000529428.5	-	30267552,30268401,30268935,30270055,30273028,30273378,30276012,30277263,30277596,30278180,30278932,30279692,30279883,30280442,30281266,30281574,30285185,30286166,30288560,30291202,30293098,30294114,30294565,30298376,30299868,30301221,30305054,30305789,30334974	30267672,30268561,30269083,30270165,30273230,30273521,30276167,30277428,30277793,30278380,30279073,30279794,30279971,30280561,30281425,30281705,30285457,30286268,30288785,30291375,30293196,30294187,30294691,30298590,30299927,30301358,30305210,30305953,30335054	0.520000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	190927070	190927074	190927070	+	RAMPAGE_only	4	5	11	0.353145	2.921928	chr2	190927066	190927115	SINE|MIR|MIR3	+	chr2	190910262	190927611	GLS|ENST00000461965.5	+	190910262,190921023,190921144,190923916,190924542,190927305	190910321,190921056,190921203,190923983,190924593,190927611	0.545455
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	24580610	24580623	24580622	+	High_confidence	19	19	46	1.476787	4.263314	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.913043
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	4669251	4669252	4669251	+	High_confidence	8	8	8	0.256833	2.750000	chr16	4669151	4669448	SINE|Alu|AluSz	+	chr16	4669120	4681580	MGRN1|ENST00000591673.1	+	4669120,4671390,4673497,4677462,4680031,4681549	4669252,4671459,4673657,4677572,4680097,4681580	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	219218516	219218528	219218516	+	RAMPAGE_only	2	2	7	0.224729	2.584963	chr1	219218401	219218614	DNA|hAT-Charlie|MER30	+	chr1	219173843	219242690	MSTRG.2609.1	+	219173843,219179146,219193081,219210531,219211491,219218517,219241198	219173981,219179246,219193251,219210647,219211752,219218712,219242690	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	26914550	26914561	26914550	-	RAMPAGE_only	2	2	8	0.256833	2.521641	chr12	26914520	26914587	LINE|RTE-BovB|MamRTE1	+	chr12	26905180	26917734	INTS13|ENST00000538155.5	-	26905180,26906301,26911177,26913456,26913973,26916001,26917351,26917643	26905536,26906437,26911317,26913687,26914128,26916180,26917441,26917734	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	58943432	58943463	58943432	+	High_confidence	11	12	20	0.642081	4.084184	chr11	58943109	58943541	LTR|ERV1|MER57A1	+	chr11	58943370	58955334	GLYATL1|ENST00000524881.5	+	58943370,58943542,58947045,58947857,58954769,58955175	58943460,58943666,58947165,58947965,58954896,58955334	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	98328663	98328664	98328663	+	High_confidence	8	8	10	0.321041	2.947703	chr13	98328401	98328990	DNA|TcMar-Tigger|MER44C	-	chr13	98328777	98377918	FARP1|ENST00000596613.5	+	98328777,98329790,98343761,98365394,98368116,98377820	98329159,98329939,98343866,98365437,98368195,98377918	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	131500773	131502265	131500977	-	RAMPAGE_only	80	117	2124	68.189055	7.639857	chr7	131500865	131500983	SINE|MIR|MIR3	+	chr7	131500261	131556563	PODXL|ENST00000446198.5	-	131500261,131505867,131506259,131506578,131508950,131510827,131556259	131504508,131506035,131506321,131506726,131509585,131511433,131556563	0.998588
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	94996905	94996906	94996905	-	High_confidence	10	10	10	0.321041	3.121928	chr12	94996903	94997043	SINE|MIR|MIR3	+	chr12	94971331	94997447	NDUFA12|ENST00000550187.5	-	94971331,94994169,94997307	94971620,94994257,94997447	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	38354262	38354285	38354262	+	RAMPAGE_only	2	2	14	0.449457	3.700440	chr13	38354306	38354393	LINE|L1|L1M5	+	chr13	38349880	38363619	UFM1|ENST00000239878.8	+	38349880,38349998,38354238,38358092,38359300,38360710	38349921,38350055,38354296,38358132,38359333,38363619	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	34988767	34988792	34988767	-	High_confidence	6	6	18	0.577873	3.614369	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	123617863	123617864	123617863	+	High_confidence	8	8	12	0.385249	3.418296	chr12	123617854	123617910	LINE|RTE-X|L4_A_Mam	-	chr12	123618015	123620422	DDX55|ENST00000421670.3	+	123618015,123619431,123619963	123618837,123619724,123620422	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	174410318	174410341	174410318	+	High_confidence	2	3	9	0.288937	2.947703	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	43080033	43080038	43080033	+	RAMPAGE_only	6	7	11	0.353145	3.121928	chr8	43078293	43080600	DNA|TcMar-Tigger|Tigger1	+	chr8	43076646	43085780	FNTA|ENST00000525099.1	+	43076646,43084709,43085159	43083180,43084881,43085780	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	47795005	47795017	47795013	-	High_confidence	4	5	11	0.353145	3.321928	chr14	47794965	47800647	LINE|L1|L1PA2	+	chr14	47764952	47795014	LINC00648|NR_039996.1	-	47764952,47789905,47794971	47767757,47789943,47795014	0.636364
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	108555406	108555495	108555406	+	RAMPAGE_only	7	7	55	1.765724	4.976548	chr3	108555257	108556040	LTR|ERV1|LTR39	+	chr3	108589489	108694846	DZIP3|NM_014648.3	+	108589489,108605334,108608088,108611173,108616540,108624443,108625844,108629061,108632952,108634870,108636615,108637495,108642437,108644163,108646616,108647942,108648917,108651136,108654144,108661876,108662129,108669680,108672559,108674077,108675785,108677496,108684215,108686444,108687975,108688592,108688822,108690786,108693359	108589839,108605438,108608158,108611329,108616657,108624524,108625969,108629176,108633072,108634972,108636708,108637548,108642514,108644781,108646649,108648112,108648962,108651162,108654310,108661972,108662257,108669749,108672656,108674181,108675873,108677598,108684341,108686584,108688096,108688736,108688924,108690903,108694846	0.781818
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	2667167	2667196	2667195	+	High_confidence	9	10	20	0.642081	3.932138	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	147173173	147173226	147173173	+	High_confidence	25	25	111	3.563552	6.016460	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.891892
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	111097319	111097352	111097351	-	High_confidence	11	11	61	1.958349	5.035177	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.967213
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	51973605	51973639	51973620	+	RAMPAGE_only	68	77	170	5.457693	4.874590	chr8	51973413	51973909	LINE|L1|L1M4	-	chr8	51961457	52022974	AC064807.2|ENST00000521188.1	+	51961457,52022415	51961570,52022974	0.941176
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	65646866	65646867	65646866	+	RAMPAGE_only	24	24	24	0.770498	4.220176	chr5	65646392	65647020	LINE|L1|L1MC4a	-	chr5	65625068	65652736	TRAPPC13|ENST00000508304.5	+	65625068,65635300,65635943,65637695,65647054,65650809,65652500	65625106,65635369,65636043,65637780,65647182,65650882,65652736	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	132277851	132277877	132277851	-	High_confidence	21	21	103	3.306720	5.000334	chr5	132277617	132277920	SINE|Alu|AluJr	+	chr5	132192670	132277855	MSTRG.22944.7	-	132192670,132194925,132195411,132198320,132198878,132203747,132204081,132207707,132209137,132210283,132213915,132217196,132217751,132218544,132277341	132193080,132195022,132195480,132198380,132198932,132203847,132204152,132207884,132209331,132210523,132214053,132217348,132217848,132218644,132277855	0.902913
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	191245163	191245183	191245169	+	High_confidence	5	5	16	0.513665	3.240224	chr2	191245108	191245343	LINE|L1|L1M4b	+	chr2	191245184	191346274	MYO1B|ENST00000418908.5	+	191245184,191276886,191296110,191329934,191341460,191346235	191245257,191277030,191296226,191330029,191341565,191346274	0.812500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	53614537	53614563	53614537	-	RAMPAGE_only	5	6	16	0.513665	3.000000	chrX	53614388	53614509	SINE|MIR|MIR3	-	chrX	53584210	53611862	MSTRG.29286.14	-	53584210,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522	53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53611862	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	44336740	44336772	44336771	-	RAMPAGE_only	8	8	39	1.252059	4.804508	chr1	44336468	44336861	LINE|CR1|Plat_L3	-	chr1	44221069	44323043	ERI3|ENST00000372259.9	-	44221069,44247938,44284834,44308309,44313168,44319627,44322724	44221640,44248038,44284907,44308401,44313228,44319744,44323043	0.641026
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	1584994	1585022	1585021	-	RAMPAGE_only	10	10	17	0.545769	3.500000	chr5	1584920	1585091	LTR|ERVK|HERVK9-int	-	chr5	1571842	1594620	MSTRG.22055.1	-	1571842,1576178,1593112,1594394	1574295,1589365,1593284,1594620	0.941176
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	100355153	100355175	100355153	+	RAMPAGE_only	3	3	8	0.256833	2.500000	chr7	100355125	100355232	LINE|L1|L1MD	-	chr7	100353735	100359014	PILRB|ENST00000431140.5	+	100353735,100355142,100356749,100358219,100358898	100354012,100355240,100356883,100358366,100359014	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	62376850	62376866	62376850	-	High_confidence	3	4	11	0.353145	2.913977	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62375331	62376836	AL590399.1|ENST00000430302.1	-	62375331,62376252	62375528,62376836	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	44619050	44619051	44619050	+	RAMPAGE_only	23	24	25	0.802602	4.251629	chr7	44618793	44619481	LTR|ERVL|MER21A	+	chr7	44606638	44709066	OGDH|ENST00000222673.5	+	44606638,44624316,44645326,44647656,44666735,44673786,44674410,44675177,44675969,44681719,44693824,44694423,44696024,44696428,44696913,44697369,44697603,44698191,44700140,44701542,44707224,44707581,44707878	44606653,44624565,44645518,44647759,44666851,44673941,44674557,44675268,44676149,44681848,44694004,44694576,44696127,44696557,44697064,44697497,44697782,44698263,44700269,44701615,44707388,44707736,44709066	0.760000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	7566051	7566057	7566051	-	High_confidence	16	16	48	1.540996	5.155549	chr7	7565778	7566082	SINE|Alu|AluSc	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.687500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	187021850	187021852	187021850	+	High_confidence	82	163	195	6.260295	5.956675	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021854	187042839	ST6GAL1|ENST00000440338.5	+	187021854,187038391,187038741,187042653	187022004,187038491,187038873,187042839	0.523077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	86921225	86921351	86921320	-	RAMPAGE_only	10	10	57	1.829932	5.385350	chr11	86921261	86921392	LINE|L2|L2a	+	chr11	86884225	86955391	MSTRG.5266.2	-	86884225,86915614,86954800	86915542,86922098,86955391	0.964912
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	168137448	168137470	168137448	-	High_confidence	2	2	9	0.288937	2.947703	chr1	168137391	168137473	LINE|L2|L2b	-	chr1	168085277	168137583	GPR161|ENST00000367835.1	-	168085277,168087584,168090563,168096507,168104476,168114455,168137164	168085796,168087704,168090668,168097232,168104894,168114549,168137583	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	164844726	164844760	164844726	+	RAMPAGE_only	14	14	72	2.311493	5.424621	chr2	164844701	164845004	SINE|Alu|AluSx3	-	chr2	164840748	164849396	LOC101929633|NR_110574.1	+	164840748,164848841	164840822,164849396	0.763889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	39685045	39685046	39685045	+	High_confidence	11	11	12	0.385249	2.845351	chr8	39684703	39685147	LTR|ERV1|LTR2	+	chr8	39685129	39730062	ADAM18|ENST00000523755.5	+	39685129,39692599,39706789,39723747,39729897	39685412,39692680,39706904,39723907,39730062	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	373084	373106	373084	-	RAMPAGE_only	3	3	10	0.321041	2.641604	chr10	372960	373132	SINE|MIR|MIR	-	chr10	274189	486558	DIP2C|ENST00000381496.7	-	274189,281199,283271,286272,288363,310030,327005,329432,341198,344808,344998,348640,349330,356425,357827,362489,363196,364373,366274,369493,382646,384026,384545,387744,389990,390263,390739,399108,408925,413912,415768,419064,422823,440870,472438,486458	277577,281323,283446,286347,288421,310092,327176,329601,341329,344918,345110,348762,349454,356506,357937,362691,363311,364582,366411,369633,382761,384146,384639,387809,390093,390373,390863,399219,409017,414110,415888,419199,423033,440996,472549,486558	0.900000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	77127872	77127873	77127872	+	RAMPAGE_only	7	7	10	0.321041	3.169925	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77130093	77191307	SEC14L1|ENST00000586390.5	+	77130093,77142645,77143566,77190802,77191187	77130191,77142750,77143659,77190952,77191307	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	33141750	33141753	33141750	-	RAMPAGE_only	8	8	13	0.417353	3.418296	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33084583	33161465	CSTF3|ENST00000323959.8	-	33084583,33085712,33085894,33086987,33090531,33092270,33096305,33096834,33098689,33099033,33099607,33102176,33103106,33105566,33105882,33105997,33107902,33108385,33141666,33141884,33161298	33085289,33085773,33085989,33087141,33090727,33092340,33096408,33096978,33098764,33099150,33099717,33102339,33103184,33105693,33105917,33106064,33108000,33108418,33141762,33141986,33161465	0.846154
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	227142956	227142990	227142956	-	RAMPAGE_only	16	16	30	0.963122	4.548394	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.733333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	128369555	128369562	128369555	+	RAMPAGE_only	6	6	13	0.417353	3.238901	chr3	128369587	128369654	SINE|MIR|MIRb	+	chr3	128153500	128408642	EEFSEC|ENST00000483457.1	+	128153500,128246835,128262127,128341232,128408068	128153823,128247043,128262224,128341889,128408642	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	421845	421860	421859	+	High_confidence	3	3	8	0.256833	2.750000	chr20	421657	421956	LINE|L2|L2b	-	chr20	421941	427488	RBCK1|ENST00000621487.1	+	421941,427312	422238,427488	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	48683361	48683363	48683362	+	High_confidence	20	32	32	1.027330	3.523231	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.937500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	113625643	113625644	113625643	-	RAMPAGE_only	5	5	8	0.256833	2.807355	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	41871730	41871746	41871745	-	RAMPAGE_only	3	3	11	0.353145	3.121928	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	50756741	50756943	50756942	-	RAMPAGE_only	12	15	101	3.242512	5.407009	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.920792
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	120143500	120143501	120143500	+	RAMPAGE_only	10	10	10	0.321041	2.921928	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120036235	120146854	RHOXF1-AS1|ENST00000553843.5	+	120036235,120120851,120138997,120143722,120145637	120036532,120121139,120139119,120143900,120146854	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	135675559	135675600	135675559	+	RAMPAGE_only	3	3	13	0.417353	3.392747	chr7	135675185	135675605	LINE|L1|L1ME4b	-	chr7	135662520	135676412	STMP1|ENST00000507606.2	+	135662520,135672752,135674090	135662594,135672806,135676412	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	142117516	142117540	142117516	-	RAMPAGE_only	15	15	40	1.284163	4.903056	chr3	142117240	142117813	LINE|L1|L1MC4	+	chr3	141995070	142126370	TFDP2|ENST00000467634.1	-	141995070,142005440,142093060,142101734,142126148	141995141,142005544,142093127,142101841,142126370	0.575000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	164848099	164848117	164848116	+	RAMPAGE_only	6	11	17	0.545769	3.750000	chr2	164848110	164848210	SINE|MIR|MIR	+	chr2	164840748	164849396	LOC101929633|NR_110574.1	+	164840748,164848841	164840822,164849396	0.882353
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	212386252	212386297	212386296	-	RAMPAGE_only	3	3	8	0.256833	2.750000	chr2	212386179	212386331	LINE|L2|L2c	+	chr2	212384973	212391701	MSTRG.17182.1	-	212384973	212391701	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	18706986	18707033	18707032	-	RAMPAGE_only	5	8	31	0.995226	4.573557	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18704304	18726180	IGSF22|ENST00000513874.5	-	18704304,18705816,18706913,18707803,18708206,18709386,18710326,18710654,18712081,18713851,18714276,18714499,18715431,18716727,18717930,18718614,18719715,18720063,18720185,18721534,18721909,18724127,18726073	18704538,18706146,18707213,18707996,18708295,18709683,18710455,18710828,18712384,18714148,18714418,18714624,18715716,18717000,18718093,18718728,18719893,18720103,18720285,18721671,18722041,18724269,18726180	0.612903
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	34244698	34244816	34244815	-	High_confidence	18	30	167	5.361380	5.874510	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244796	MSTRG.22214.4	-	34175821,34179012,34182679,34218294,34239374,34244615	34175957,34179097,34182867,34218450,34239448,34244796	0.778443
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	50816069	50816070	50816069	+	RAMPAGE_only	6	6	7	0.224729	2.584963	chr3	50815749	50816183	LTR|ERV1|LTR54B	-	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	135429032	135429087	135429086	-	RAMPAGE_only	3	3	16	0.513665	3.272906	chr6	135428847	135429113	LINE|L2|L2c	-	chr6	135284895	135442685	AHI1|ENST00000475846.6	-	135284895,135286398,135290422,135300499,135301407,135302711,135318518,135323161,135358131,135394775,135404950,135411347,135427166,135428628,135429881,135431207,135433026,135438374,135442581	135285647,135286548,135290525,135300558,135301539,135302817,135318616,135323324,135358187,135394896,135404977,135411544,135427307,135428759,135430000,135431314,135433256,135438498,135442685	0.812500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	111387800	111387801	111387800	-	RAMPAGE_only	12	13	16	0.513665	3.875000	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.687500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	50737451	50737463	50737451	+	RAMPAGE_only	4	4	12	0.385249	2.845351	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50740266	50744808	LUC7L3|ENST00000507503.1	+	50740266,50741101,50741656,50743705,50744651	50740345,50741246,50741731,50743810,50744808	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	75611171	75611200	75611178	+	High_confidence	16	19	56	1.797828	5.592760	chr5	75610835	75611347	Retroposon|SVA|SVA_A	-	chr5	75611458	75671846	ANKDD1B|ENST00000601380.2	+	75611458,75616803,75620314,75625646,75625850,75634897,75635783,75653141,75656028,75659282,75663393,75666791,75669251,75670978	75611827,75616907,75620413,75625745,75625955,75634996,75635882,75653240,75656127,75659381,75663489,75666993,75669383,75671846	0.642857
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	72305913	72305914	72305913	-	High_confidence	120	141	146	4.687195	5.837971	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144885.1	-	72301637,72302809,72305301,72305824	72302244,72302934,72305422,72305914	0.965753
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	32403105	32403186	32403115	-	RAMPAGE_only	12	17	90	2.889367	5.472424	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.966667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	761031	761052	761031	+	High_confidence	4	5	12	0.385249	3.277613	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	34511863	34511864	34511863	-	High_confidence	6	7	8	0.256833	3.000000	chr11	34511819	34511851	LINE|CR1|X6A_LINE	-	chr11	34482429	34511828	ELF5|ENST00000528709.1	-	34482429,34490008,34505628,34511543	34482499,34490059,34505753,34511828	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	3536827	3536873	3536827	-	High_confidence	13	13	102	3.274616	6.053661	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.774510
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	13386129	13386133	13386132	+	RAMPAGE_only	14	15	26	0.834706	3.790767	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.807692
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	9265489	9265549	9265548	-	High_confidence	4	4	23	0.738394	4.070656	chr5	9265168	9265679	LTR|ERVL|LTR53	+	chr5	9202123	9265545	SEMA5A|ENST00000514923.4	-	9202123,9224673,9226868,9237827,9265433	9202240,9224887,9226967,9237890,9265545	0.782609
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	182030851	182030862	182030851	+	High_confidence	5	6	13	0.417353	3.251629	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.769231
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	66408519	66408539	66408532	+	High_confidence	4	4	18	0.577873	3.969816	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66412135	LINC00920|ENST00000499966.1	+	66408523,66410279	66408814,66412135	0.944444
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	73144752	73144771	73144752	-	RAMPAGE_only	5	5	16	0.513665	3.280639	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.937500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	114098030	114098044	114098038	-	High_confidence	125	137	266	8.539684	6.356212	chr9	114097946	114098039	SINE|MIR|MIR3	+	chr9	114097399	114097936	KIF12|ENST00000491059.1	-	114097399,114097606	114097436,114097936	0.699248
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	125219777	125219781	125219777	+	High_confidence	222	225	341	10.947489	6.478308	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.944282
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	107266164	107266165	107266164	+	RAMPAGE_only	4	4	7	0.224729	2.521641	chr4	107265946	107266484	LTR|ERVL|MLT2F	+	chr4	107258699	107301870	AC104663.1|ENST00000508555.1	+	107258699,107301488	107258874,107301870	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	197299315	197299321	197299320	-	High_confidence	3	4	8	0.256833	2.521641	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	202913394	202913395	202913394	-	RAMPAGE_only	16	16	24	0.770498	3.788755	chr2	202913304	202913405	SINE|MIR|MIR	+	chr2	202874781	202912226	WDR12|ENST00000261015.4	-	202874781,202882710,202883608,202884197,202884394,202892616,202894580,202896064,202897299,202899530,202901024,202907864,202911435	202880937,202882783,202883741,202884303,202884535,202892702,202894626,202896219,202897415,202899637,202901119,202907959,202912226	0.916667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	14245642	14245648	14245647	+	RAMPAGE_only	6	6	10	0.321041	2.921928	chr16	14245645	14245696	SINE|tRNA|LFSINE_Vert	+	chr16	14079287	14266772	MRTFB|ENST00000318282.9	+	14079287,14140543,14210242,14212353,14213544,14217125,14218819,14234145,14240236,14245527,14246472,14248925,14251861,14252364,14258100,14260908	14079354,14140760,14210308,14212409,14213620,14217287,14218998,14234283,14240484,14245660,14247357,14249081,14252023,14252502,14258161,14266772	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	147839219	147839238	147839237	-	High_confidence	7	7	15	0.481561	3.521641	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.600000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	67387535	67387543	67387537	-	RAMPAGE_only	4	6	10	0.321041	2.947703	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.600000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	25820182	25820203	25820202	+	High_confidence	6	6	19	0.609977	3.616349	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.894737
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	113948845	113948846	113948845	-	RAMPAGE_only	4	4	6	0.192624	2.584963	chr12	113948646	113948806	SINE|MIR|MIRb	-	chr12	113816741	113966306	RBM19|ENST00000545145.6	-	113816741,113823208,113844667,113858790,113914968,113918391,113920610,113924696,113927053,113937006,113939959,113942323,113945827,113946353,113947333,113948832,113950082,113952511,113955130,113957781,113959211,113959864,113960058,113962231,113966191	113818186,113823321,113844788,113858896,113915085,113918447,113920690,113924757,113927229,113937136,113940160,113942434,113945924,113946475,113947464,113949036,113950154,113952590,113955211,113958050,113959404,113959903,113960178,113962414,113966306	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	216905301	216905302	216905301	-	RAMPAGE_only	11	11	14	0.449457	3.521641	chr1	216905163	216905699	LINE|L2|L2b	+	chr1	216505489	216939670	ESRRG|ENST00000487276.5	-	216505489,216519151,216564218,216567987,216650972,216677075,216865060,216936661,216939581	216507183,216519421,216564380,216568098,216651089,216677491,216865178,216936699,216939670	0.928571
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	168669784	168669804	168669803	-	RAMPAGE_only	6	6	10	0.321041	2.725481	chr5	168669607	168669760	SINE|MIR|MIRc	-	chr5	168661732	168883338	SLIT3|ENST00000404867.7	-	168661732,168669782,168671197,168673176,168683965,168685686,168686978,168692606,168696291,168700581,168707975,168710894,168712282,168722255,168722932,168724415,168748301,168749471,168752954,168753863,168760861,168762538,168772780,168774234,168785906,168789559,168795506,168806445,168817299,168823259,168844583,168883264	168666689,168669991,168671483,168673331,168684096,168685927,168687116,168692700,168696431,168700679,168708121,168711058,168712354,168722327,168723004,168724484,168748434,168749635,168753098,168754007,168760936,168762689,168772944,168774378,168785978,168789631,168795578,168806587,168817463,168823331,168844655,168883338	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	45952286	45952351	45952286	-	RAMPAGE_only	8	9	26	0.834706	3.829275	chr12	45952193	45952302	LINE|L1|L1ME4b	-	chr12	45937229	45990576	MSTRG.6198.11	-	45937229,45948436,45951649,45964106,45990352	45945313,45948537,45961857,45964188,45990576	0.961538
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	40650121	40650152	40650121	+	High_confidence	17	17	84	2.696742	5.408307	chr15	40650091	40650181	LINE|L2|L2c	+	chr15	40650126	40654977	KNL1|ENST00000532347.1	+	40650126,40650543,40651470,40652004,40654908	40650378,40650583,40651572,40652105,40654977	0.702381
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	150125473	150125551	150125473	-	RAMPAGE_only	5	5	39	1.252059	4.594456	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113841	150155627	MSTRG.23220.3	-	150113841,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150152712	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155627	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	99023422	99023425	99023424	+	RAMPAGE_only	5	8	10	0.321041	2.947703	chr9	99023460	99023631	LINE|L1|L1MC5	+	chr9	98943712	99070792	COL15A1|NM_001855.4	+	98943712,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	47743725	47743747	47743725	+	High_confidence	19	19	57	1.829932	5.574032	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.649123
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	10941130	10941145	10941141	+	RAMPAGE_only	7	7	16	0.513665	3.773557	chr7	10941109	10941301	LINE|L2|L2b	-	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.687500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	217718239	217718274	217718239	+	RAMPAGE_only	5	6	22	0.706290	3.784184	chr1	217718126	217718430	LINE|L1|L1MEg	+	chr1	217737843	217801768	SPATA17|ENST00000492747.2	+	217737843,217739472,217741974,217774333,217782173,217801717	217737967,217739589,217742098,217774537,217782322,217801768	0.818182
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	43881075	43881088	43881087	+	High_confidence	6	8	30	0.963122	4.681728	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	13928280	13928289	13928288	-	RAMPAGE_only	9	9	16	0.513665	3.875000	chr10	13928016	13928290	SINE|Alu|AluJo	-	chr10	13666223	13891729	MSTRG.2984.4	-	13666223,13670405,13674910,13693481,13693897,13701339,13707036,13737843,13740193,13740511,13747735,13761646,13762623,13782921,13796495,13810813,13858846,13891623	13666325,13670528,13675044,13693517,13694039,13701478,13707113,13737930,13740251,13740577,13747819,13761669,13762680,13783006,13796588,13810908,13858912,13891729	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	2975621	2975665	2975660	+	RAMPAGE_only	5	9	38	1.219955	4.308271	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2853910	3008090	MSTRG.11678.6	+	2853910,2905283,2957758,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010	2854102,2905368,2957794,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008090	0.842105
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	121914857	121914860	121914857	+	High_confidence	3	4	8	0.256833	2.521641	chr3	121914749	121914875	SINE|Alu|AluYc	+	chr3	121914924	121923130	SLC15A2|ENST00000489886.1	+	121914924,121915226,121915615,121922219,121922774,121923039	121915040,121915317,121915693,121922302,121922861,121923130	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	100351400	100351435	100351434	+	RAMPAGE_only	3	3	12	0.385249	3.251629	chr7	100351420	100351962	LINE|L2|L2	-	chr7	100336242	100351900	MSTRG.25895.11	+	100336242,100338178,100338772,100345864,100349716,100351251	100336337,100338264,100338889,100345968,100349887,100351900	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	132403746	132403749	132403748	-	High_confidence	11	15	18	0.577873	3.734522	chr6	132403664	132403864	LINE|L2|L2c	+	chr6	132315696	132403733	MSTRG.24691.5	-	132315696,132320628,132322678,132323930,132328012,132328414,132372607,132372829,132374630,132401162,132403495	132315777,132320688,132322870,132324097,132328115,132328594,132372691,132372997,132374777,132402079,132403733	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	67387060	67387120	67387115	-	RAMPAGE_only	12	12	32	1.027330	4.284684	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.781250
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	85330227	85330278	85330237	-	RAMPAGE_only	10	14	54	1.733620	5.430632	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.574074
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	100540757	100540773	100540757	+	RAMPAGE_only	3	3	7	0.224729	2.807355	chr10	100540797	100540932	SINE|MIR|MIRb	+	chr10	100535883	100553924	HIF1AN|NM_017902.2	+	100535883,100536410,100540633,100544950,100545942,100546517,100547139,100548092	100536135,100536661,100540782,100545096,100546049,100546581,100547250,100553924	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	6853886	6853929	6853928	+	High_confidence	16	16	78	2.504118	5.926428	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6895102	ALOX12P2|ENST00000576636.6	+	6853929,6854213,6892002,6894883,6895095	6854060,6854453,6892075,6895006,6895102	0.576923
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	31993982	31993994	31993993	+	High_confidence	7	7	20	0.642081	3.536887	chr17	31994036	31994094	LINE|L1|L1MA2	+	chr17	31994352	31999376	SUZ12|ENST00000578106.1	+	31994352,31995563,31996797,31998657	31994721,31995762,31996877,31999376	0.950000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	61952970	61953005	61952970	-	RAMPAGE_only	6	6	15	0.481561	3.235926	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.933333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	240686067	240686140	240686109	+	High_confidence	3	3	25	0.802602	3.757925	chr2	240685606	240686514	LTR|ERV1|MER49	-	chr2	240686333	240690414	AC011298.1|ENST00000407635.2	+	240686333,240688415,240688601	240687821,240688512,240690414	0.840000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	53467737	53467874	53467737	+	High_confidence	7	8	71	2.279389	5.365275	chr12	53467721	53467786	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.971831
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	52236207	52236239	52236238	-	High_confidence	3	4	8	0.256833	2.750000	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	79455280	79455281	79455280	+	High_confidence	5	5	7	0.224729	2.807355	chr7	79455163	79455401	SINE|MIR|MIRb	+	chr7	79454909	79467470	MSTRG.25742.22	+	79454909,79458846,79459535	79456180,79458999,79467470	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	8600725	8600749	8600748	+	High_confidence	24	24	78	2.504118	4.383997	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600725	8788523	PLCB1|ENST00000626966.2	+	8600725,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8600781,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788523	0.948718
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	63306085	63306097	63306096	+	RAMPAGE_only	3	3	12	0.385249	3.277613	chr15	63305951	63306107	DNA|hAT-Charlie|MER5B	-	chr15	63277553	63309126	APH1B|ENST00000261879.9	+	63277553,63279160,63286557,63287423,63302344,63305613	63277736,63279331,63286628,63287546,63302472,63309126	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	43490958	43490967	43490958	-	RAMPAGE_only	3	3	8	0.256833	2.521641	chr3	43490741	43491230	LTR|ERV1|MER50	+	chr3	43366888	43555411	ANO10|ENST00000448045.1	-	43366888,43432610,43549719,43551471,43555277	43366974,43432727,43549848,43551588,43555411	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	151436801	151436827	151436826	-	High_confidence	8	8	24	0.770498	4.055958	chr6	151436689	151436932	LINE|CR1|L3	+	chr6	151423525	151436826	RMND1|ENST00000643550.1	-	151423525,151427481,151430137,151433154,151436419	151423631,151427582,151430177,151433230,151436826	0.958333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	118143019	118143020	118143019	-	RAMPAGE_only	30	30	41	1.316267	4.785152	chr2	118137000	118143020	LINE|L1|L1PA2	-	chr2	118132127	118186386	THORLNC|ENST00000414886.5	-	118132127,118176764,118183086,118186230	118132372,118176905,118183322,118186386	0.634146
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	44327028	44327035	44327028	-	RAMPAGE_only	6	7	11	0.353145	3.121928	chr2	44326986	44327071	DNA|hAT-Charlie|MER58C	+	chr2	44320265	44323342	PREPL|ENST00000444696.5	-	44320265,44322730,44323261	44320643,44322854,44323342	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	5295059	5295087	5295086	-	High_confidence	2	2	6	0.192624	2.584963	chr18	5295086	5295338	LINE|L1|L1M4b	-	chr18	5291900	5294824	ZBTB14|ENST00000578327.1	-	5291900,5293243,5293971,5294800	5292204,5293327,5294001,5294824	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	243808216	243808243	243808242	-	RAMPAGE_only	3	3	6	0.192624	2.584963	chr1	243807047	243813190	LINE|L1|L1PA5	+	chr1	243664771	243814682	AKT3|ENST00000463991.5	-	243664771,243695590,243814498	243664883,243695716,243814682	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	102449836	102449845	102449836	+	High_confidence	22	22	62	1.990453	5.453881	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.790323
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	111642948	111642981	111642948	+	RAMPAGE_only	3	3	11	0.353145	3.095795	chr9	111642927	111643241	DNA?|DNA?|UCON74	+	chr9	111631359	111654345	DNAJC25|ENST00000463589.5	+	111631359,111642838,111647044,111649452,111653099	111631743,111643094,111647259,111649923,111654345	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	50172577	50172595	50172594	+	High_confidence	3	4	10	0.321041	2.921928	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172589	50176671	LINC01273|ENST00000411453.2	+	50172589,50172922,50176280	50172788,50173017,50176671	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	1655369	1655411	1655409	-	RAMPAGE_only	33	43	86	2.760950	5.921041	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.523256
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	3263695	3263776	3263695	+	RAMPAGE_only	33	45	191	6.131878	6.213935	chr10	3263620	3263792	DNA|hAT-Charlie|MER5B	+	chr10	3266002	3267015	AL139280.1|ENST00000436340.1	+	3266002,3266657	3266107,3267015	0.664921
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	20742085	20742107	20742106	-	High_confidence	4	4	10	0.321041	3.121928	chr16	20742075	20742113	LTR|ERVL-MaLR|MLT1N2	+	chr16	20733663	20742084	THUMPD1|ENST00000381337.6	-	20733663,20736859,20737707,20738896,20741508	20736358,20737286,20737956,20739071,20742084	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	45522855	45522876	45522855	-	High_confidence	2	2	8	0.256833	2.750000	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	143039246	143039277	143039266	+	High_confidence	26	27	96	3.081991	5.504248	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.906250
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	161118842	161118855	161118854	+	High_confidence	2	3	8	0.256833	2.750000	chr1	161118894	161118942	LINE|L2|L2c	+	chr1	161118907	161119943	NIT1|ENST00000461376.1	+	161118907,161119508,161119818	161119388,161119612,161119943	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	74501000	74501001	74501000	+	High_confidence	4	4	7	0.224729	2.521641	chr18	74500666	74501145	LTR|ERV1|LTR2B	-	chr18	74501089	74508865	CNDP2|ENST00000582666.5	+	74501089,74505848,74508839	74501472,74506011,74508865	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	122251849	122251864	122251851	-	RAMPAGE_only	3	5	9	0.288937	2.750000	chr9	122251686	122251830	LINE|L2|L2c	-	chr9	122241669	122247546	RBM18|ENST00000491850.5	-	122241669,122243743,122245255,122247517	122242043,122243868,122245341,122247546	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	11795578	11795579	11795578	+	High_confidence	201	201	238	7.640770	4.916918	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287744.1	+	11795572,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.987395
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	116496262	116496295	116496294	-	High_confidence	17	17	50	1.605204	4.779471	chr5	116496283	116496331	LINE|L2|L2	+	chr5	116486748	116495445	SEMA6A|ENST00000502996.5	-	116486748,116488107,116488887,116491739,116492326,116495412	116486966,116488196,116489007,116491830,116492485,116495445	0.840000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	20423690	20423704	20423703	-	RAMPAGE_only	14	24	53	1.701516	4.492502	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.754717
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	29647530	29647541	29647539	+	High_confidence	4	8	14	0.449457	3.546594	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.785714
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	74896302	74896303	74896302	+	High_confidence	4	5	7	0.224729	2.521641	chr15	74896351	74896455	SINE|MIR|MIR3	+	chr15	74895433	74898228	MPI|ENST00000566556.1	+	74895433	74898228	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	30177806	30177826	30177806	+	RAMPAGE_only	2	2	8	0.256833	2.500000	chr17	30177715	30177933	SINE|MIR|MIR	-	chr17	30118079	30178164	NSRP1|ENST00000589608.1	+	30118079,30156539,30172541,30178070	30118173,30156662,30172598,30178164	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	54509421	54509438	54509421	+	High_confidence	10	12	40	1.284163	4.892407	chr8	54509386	54509569	LTR|ERVL-MaLR|MLT1A0	-	chr8	54509421	54560986	RP1|ENST00000646684.1	+	54509421,54532695,54535295,54547141,54558759,54560295	54509548,54532902,54535349,54547323,54559320,54560986	0.775000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	53953993	53954012	53953993	-	RAMPAGE_only	4	5	12	0.385249	3.418296	chr20	53953927	53954294	LTR|ERVL-MaLR|MLT1K	+	chr20	53944782	53995929	BCAS1|ENST00000422805.1	-	53944782,53953431,53957431,53975388,53985286,53995011,53995891	53944996,53953695,53957497,53975430,53985499,53995056,53995929	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	111841693	111841716	111841715	-	High_confidence	3	3	11	0.353145	3.121928	chr12	111841557	111841731	SINE|MIR|MIRb	+	chr12	111839776	111841710	MAPKAPK5-AS1|ENST00000590479.5	-	111839776,111840332,111841326,111841683	111840003,111840477,111841470,111841710	0.818182
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	64989947	64989972	64989947	-	RAMPAGE_only	2	2	8	0.256833	2.750000	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	33194695	33194717	33194708	-	High_confidence	52	57	169	5.425589	5.655001	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.893491
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	28681084	28681085	28681084	+	RAMPAGE_only	16	16	18	0.577873	3.836592	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	187513641	187513653	187513652	-	High_confidence	14	14	26	0.834706	3.584963	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	0.807692
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	35890901	35890902	35890901	+	RAMPAGE_only	12	12	18	0.577873	3.572469	chrX	35890725	35891088	LTR|ERVL|LTR41	+	chrX	35919733	35990147	CFAP47|ENST00000297866.9	+	35919733,35926016,35941282,35948313,35951130,35951802,35953591,35955960,35966564,35967618,35970767,35971585,35971868,35975146,35975671,35989318	35920048,35926168,35941398,35948452,35951359,35951963,35953719,35956196,35966754,35967832,35970923,35971772,35971965,35975363,35975913,35990147	0.722222
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	50159430	50159438	50159435	-	RAMPAGE_only	3	4	10	0.321041	2.947703	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.900000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	45768760	45768816	45768805	+	RAMPAGE_only	35	35	94	3.017783	5.193339	chr22	45768478	45769161	LINE|L1|L1MC5a	+	chr22	45793595	45843797	ATXN10|ENST00000402380.3	+	45793595,45806958,45842990,45843668	45793778,45807022,45843178,45843797	0.574468
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	195688575	195688595	195688579	+	High_confidence	2	3	11	0.353145	3.321928	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688520	195708807	MUC20-OT1|ENST00000630417.2	+	195688520,195689338,195699029,195708133,195708746	195688797,195689438,195699207,195708435,195708807	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	46602235	46602246	46602240	+	High_confidence	10	11	48	1.540996	4.462581	chr10	46602189	46602281	LTR|ERV1|LTR78B	+	chr10	46602354	46612154	AL356056.1|ENST00000424615.2	+	46602354,46611908	46602515,46612154	0.520833
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	155478111	155478145	155478111	-	RAMPAGE_only	5	6	16	0.513665	3.640224	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.812500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	155555213	155555228	155555213	-	RAMPAGE_only	2	3	9	0.288937	2.947703	chr3	155555213	155555573	LTR|ERVL-MaLR|MLT1J2	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	42388539	42388557	42388539	+	RAMPAGE_only	18	18	44	1.412579	4.719349	chr12	42387718	42388711	LTR|ERVK|LTR5B	+	chr12	42326177	42448618	PPHLN1|ENST00000432191.6	+	42326177,42335882,42355160,42374862,42384939,42387455,42393569,42398853,42441314,42442640,42445972,42446591	42326229,42335974,42355222,42375074,42384996,42387535,42393689,42398994,42441429,42442741,42446290,42448618	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	64773490	64773491	64773490	-	RAMPAGE_only	12	12	13	0.417353	3.251629	chr11	64773369	64773442	LINE|RTE-BovB|MamRTE1	-	chr11	64769541	64771607	SF1|ENST00000496969.1	-	64769541,64769963,64770255,64771463	64769609,64770053,64770408,64771607	0.846154
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	178577733	178577746	178577745	-	RAMPAGE_only	5	5	17	0.545769	4.000000	chr5	178577722	178577875	SINE|MIR|MIRb	-	chr5	178237615	178590555	COL23A1|NM_173465.3	-	178237615,178239140,178242041,178242340,178245941,178246253,178246390,178247525,178247774,178248191,178249116,178250060,178252543,178254948,178256352,178256865,178257522,178259720,178261721,178262216,178263207,178267306,178268729,178270336,178288323,178290361,178306874,178560681,178589903	178238700,178239179,178242128,178242394,178245968,178246307,178246453,178247552,178247831,178248254,178249206,178250105,178252597,178255026,178256397,178256928,178257567,178259747,178261748,178262252,178263324,178267333,178268756,178270363,178288350,178290369,178306919,178560748,178590555	0.529412
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	81664294	81664344	81664343	+	RAMPAGE_only	6	8	23	0.738394	3.550341	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.956522
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	13759244	13759271	13759270	+	High_confidence	3	3	7	0.224729	2.521641	chr19	13759297	13759416	SINE|MIR|MIRc	+	chr19	13759110	13763023	CCDC130|ENST00000585844.1	+	13759110,13762298	13759272,13763023	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	59619888	59619923	59619894	+	High_confidence	896	1020	3319	106.553424	6.310460	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.949081
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	121060860	121060907	121060860	+	High_confidence	5	6	33	1.059434	4.220168	chr7	121059787	121061189	LTR|ERV1|LTR12C	+	chr7	121060760	121097815	MSTRG.26081.10	+	121060760,121064237,121097698	121061204,121064313,121097815	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	32477562	32477581	32477580	+	RAMPAGE_only	5	6	9	0.288937	2.725481	chr2	32477616	32477749	SINE|Alu|AluJb	+	chr2	32433647	32523547	MSTRG.15716.5	+	32433647,32436052,32439507,32441328,32442064,32442323,32443490,32445520,32448794,32463193,32464508,32465064,32467524,32467902,32468436,32469394,32470167,32471013,32473111,32476212,32477367,32478634,32479461,32481319,32482428,32485642,32487646,32488587,32490040,32491424,32493539,32499546,32501712,32502794,32503041,32505004,32507979,32509737,32510525,32512932,32514989,32518253,32518816	32433804,32436184,32439686,32441462,32442226,32442455,32443588,32445668,32453954,32463381,32464823,32465164,32467739,32468111,32468783,32469614,32470301,32471124,32473239,32476344,32477583,32478818,32479617,32481453,32482582,32485759,32487801,32488714,32490151,32491558,32493667,32500109,32501888,32502891,32503236,32505205,32508259,32509994,32510634,32513154,32515770,32518397,32523547	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	240686287	240686342	240686336	+	High_confidence	7	7	30	0.963122	3.758867	chr2	240685606	240686514	LTR|ERV1|MER49	-	chr2	240686333	240690414	AC011298.1|ENST00000407635.2	+	240686333,240688415,240688601	240687821,240688512,240690414	0.966667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	13577888	13577919	13577918	-	High_confidence	3	3	7	0.224729	2.807355	chr4	13577906	13578204	SINE|Alu|AluSx1	-	chr4	13569785	13578201	BOD1L1|ENST00000505343.1	-	13569785,13576837,13577402,13577581	13570128,13576991,13577487,13578201	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	92939396	92939437	92939423	+	High_confidence	3	3	13	0.417353	3.026987	chr15	92939359	92939489	DNA|hAT-Charlie|MER5A	+	chr15	92939653	92949228	CHD2|ENST00000637613.1	+	92939653,92941821,92942842,92944414,92945820,92946037,92946247,92948951	92939718,92941955,92943068,92944515,92945865,92946082,92946340,92949228	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	99408485	99408486	99408485	-	RAMPAGE_only	6	6	9	0.288937	2.750000	chr6	99408390	99408561	SINE|MIR|MIRb	-	chr6	99398050	99425277	PNISR|ENST00000647811.1	-	99398050,99402539,99403828,99404602,99406030,99408080,99409172,99410740,99412550,99414571,99415635,99416348,99425214	99401630,99402710,99403882,99404702,99406168,99408271,99409344,99410964,99412739,99414686,99415747,99416428,99425277	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	186890932	186890936	186890935	+	High_confidence	25	26	52	1.669412	4.286370	chr4	186889932	186891343	LTR|ERV1|LTR12C	+	chr4	186890968	186892366	AC108865.1|ENST00000507644.2	+	186890968,186892270	186891368,186892366	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	92104106	92104164	92104106	+	RAMPAGE_only	74	82	290	9.310182	6.873969	chr13	92103672	92104445	LINE|L1|L1M4	-	chr13	91398618	92867237	GPC5|NM_004466.5	+	91398618,91448760,91693186,91728531,91756294,91907936,92144829,92866281	91399209,91448922,91693881,91728665,91756420,91908057,92144989,92867237	0.737931
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	224210509	224210527	224210526	-	High_confidence	5	5	9	0.288937	2.750000	chr1	224210478	224210598	LINE|L2|L2a	+	chr1	224208746	224210412	AC092809.2|ENST00000453760.5	-	224208746,224210240	224209011,224210412	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	159940558	159940583	159940570	-	RAMPAGE_only	3	3	15	0.481561	3.664498	chr2	159940405	159940556	SINE|Alu|AluJo	-	chr2	159922877	159945000	MSTRG.16709.1	-	159922877,159941745,159942126,159944905	159940567,159941992,159942159,159945000	0.933333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	67203082	67203103	67203102	-	RAMPAGE_only	3	3	12	0.385249	3.095795	chr8	67202954	67203059	LINE|L1|L1ME2z	-	chr8	67198404	67201889	ARFGEF1|ENST00000517955.2	-	67198404,67200395,67201466	67199098,67200513,67201889	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	134432428	134432451	134432450	-	High_confidence	2	3	7	0.224729	2.521641	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	195689353	195689361	195689360	+	High_confidence	3	3	9	0.288937	3.000000	chr3	195689376	195689522	LINE|L1|L1MC5a	+	chr3	195689377	195708807	MUC20-OT1|ENST00000451216.6	+	195689377,195689545,195708133,195708428,195708746	195689438,195689608,195708268,195708513,195708807	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	75774486	75774493	75774492	+	RAMPAGE_only	6	6	17	0.545769	3.452820	chr4	75774429	75774610	SINE|MIR|MIR3	+	chr4	75724597	75814286	USO1|ENST00000264904.8	+	75724597,75752372,75752539,75757496,75760593,75770438,75770821,75771081,75774675,75782679,75787061,75790149,75790642,75793689,75795335,75799621,75800350,75800617,75801078,75804133,75805139,75806485,75808952,75810431,75812159,75813205	75724885,75752459,75752604,75757573,75760605,75770539,75770924,75771137,75774796,75782858,75787202,75790238,75790797,75793901,75795356,75799732,75800469,75800799,75801200,75804272,75805303,75806572,75809051,75810539,75812375,75814286	0.882353
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	128622495	128622529	128622495	+	RAMPAGE_only	2	2	12	0.385249	3.418296	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128652334	MSTRG.26135.3	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294,128629393,128631679,128638773,128641202,128642216,128648791,128651037,128651188	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626530,128629458,128631869,128638897,128641379,128642281,128648982,128651095,128652334	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	76557847	76557854	76557853	+	High_confidence	8	10	16	0.513665	3.250000	chr17	76557889	76558010	SINE|MIR|MIR	+	chr17	76557791	76565279	SNHG16|ENST00000590435.5	+	76557791,76558944,76561287,76563118,76563972	76557857,76559043,76561398,76563482,76565279	0.937500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	64990020	64990080	64990049	-	High_confidence	4	4	24	0.770498	4.022055	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	95650472	95650473	95650472	+	High_confidence	101	101	101	3.242512	4.891708	chr14	95650407	95650888	LTR|ERV1|LTR12C	+	chr14	95650497	95671560	TCL6|ENST00000357168.6	+	95650497,95652044,95652376,95654508,95662479,95663255,95669550,95670441,95671334	95651029,95652226,95652489,95654626,95662664,95663635,95669617,95670577,95671560	0.950495
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	42245137	42245144	42245137	+	High_confidence	3	3	7	0.224729	2.521641	chr2	42245085	42245395	SINE|Alu|AluSx	-	chr2	42245121	42330744	MSTRG.15806.9	+	42245121,42245504,42256500,42261120,42264705,42280849,42282822,42284633,42286268,42288226,42295124,42295380,42301240,42303103,42303314,42304483,42315961,42317426,42325466,42326153,42328885,42329733	42245414,42245687,42256630,42263306,42264731,42280973,42282972,42284703,42286379,42288322,42295259,42295516,42301392,42303229,42303446,42304551,42316050,42317524,42325554,42326252,42329016,42330744	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	26956587	26956588	26956587	-	High_confidence	5	5	8	0.256833	2.500000	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	50379847	50379860	50379859	+	RAMPAGE_only	5	5	9	0.288937	2.500000	chr19	50379903	50379991	SINE|MIR|MIRc	+	chr19	50377244	50382944	NR1H2|ENST00000593926.5	+	50377244,50377586,50377732,50378148,50378521,50379001,50379779,50381965,50382455	50377328,50377648,50377870,50378439,50378796,50379181,50379879,50382174,50382944	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	14774355	14774395	14774394	-	High_confidence	7	12	34	1.091539	4.690117	chr9	14774233	14774511	LTR|ERVL|MLT2D	+	chr9	14737365	14774161	FREM1|ENST00000427623.5	-	14737365,14740148,14746352,14746922,14747263,14747680,14756373,14759771,14769723,14770604,14774064	14737595,14740234,14746468,14747051,14747428,14747728,14756446,14759901,14769868,14770806,14774161	0.617647
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	110170695	110170716	110170695	+	RAMPAGE_only	18	18	36	1.155747	4.614997	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	0.972222
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	159428326	159428373	159428356	-	RAMPAGE_only	21	22	68	2.183077	5.666763	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.676471
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	39685108	39685118	39685108	+	High_confidence	4	6	19	0.609977	3.683542	chr8	39684703	39685147	LTR|ERV1|LTR2	+	chr8	39685129	39730062	ADAM18|ENST00000523755.5	+	39685129,39692599,39706789,39723747,39729897	39685412,39692680,39706904,39723907,39730062	0.947368
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	89272838	89272887	89272859	-	High_confidence	6	6	40	1.284163	4.515312	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	26962072	26962073	26962072	+	RAMPAGE_only	7	8	10	0.321041	3.121928	chr9	26962113	26962223	SINE|Alu|AluJr	+	chr9	26956478	27036800	IFT74|ENST00000429045.6	+	26956478,26961948,26978127,26980570,26984256,26984498,26988668,26990133,27009019,27011905,27016906,27018646,27029024,27036449	26956516,26962087,26978263,26980619,26984355,26984559,26988728,26990195,27009158,27011968,27017050,27018687,27029104,27036800	0.900000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	247171424	247171425	247171424	-	High_confidence	11	13	16	0.513665	3.750000	chr1	247171309	247171510	LTR|ERV1|MER57E3	+	chr1	247156419	247171967	ZNF124|ENST00000543802.2	-	247156419,247159005,247159686,247171847	247157403,247159066,247159813,247171967	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	86453149	86453203	86453202	-	High_confidence	126	147	1417	45.491474	6.002790	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.851800
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	119217555	119217585	119217569	+	RAMPAGE_only	3	3	11	0.353145	2.846439	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212740	119239341	USP53|ENST00000507597.5	+	119212740,119217549,119235289,119239217	119212873,119217673,119235411,119239341	0.545455
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	74000211	74000299	74000298	+	RAMPAGE_only	5	6	31	0.995226	4.631616	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.774194
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	47751510	47751522	47751521	-	RAMPAGE_only	4	4	10	0.321041	3.121928	chr11	47751373	47751591	DNA|hAT-Charlie|MER20	-	chr11	47731839	47767286	FNBP4|ENST00000534003.5	-	47731839,47734024,47736615,47743952,47746055,47750915,47751142,47752915,47754527,47765269,47767068	47732670,47734129,47736740,47744163,47746394,47751036,47751290,47753102,47754664,47765362,47767286	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	72693353	72693354	72693353	-	RAMPAGE_only	46	48	51	1.637308	4.836566	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.941176
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	73104195	73104199	73104198	-	RAMPAGE_only	4	4	10	0.321041	2.725481	chr4	73103951	73104200	DNA|hAT-Charlie|Charlie2b	-	chr4	73098072	73102779	ANKRD17|ENST00000513908.1	-	73098072,73102375	73098520,73102779	0.600000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	23951347	23951372	23951347	+	High_confidence	7	7	17	0.545769	3.734522	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	14788130	14788168	14788130	-	RAMPAGE_only	3	3	10	0.321041	2.646439	chr9	14788048	14788115	LINE|RTE-X|L4_C_Mam	-	chr9	14737365	14792884	MSTRG.27854.4	-	14737365,14740148,14746352,14746922,14747263,14747680,14756373,14759771,14769723,14770604,14774064,14784369,14792742	14737595,14740234,14746468,14747051,14747428,14747728,14756446,14759901,14769868,14770806,14776253,14789114,14792884	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	53666781	53666794	53666790	-	RAMPAGE_only	17	22	49	1.573100	4.996115	chrX	53666750	53666880	LINE|L2|L2c	+	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.938776
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	70401442	70401503	70401471	+	RAMPAGE_only	4	4	31	0.995226	4.256565	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.741935
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	3340916	3340939	3340916	-	RAMPAGE_only	2	3	9	0.288937	2.725481	chr20	3340814	3340956	LINE|CR1|X7A_LINE	-	chr20	3249304	3407625	C20orf194|ENST00000252032.9	-	3249304,3253725,3255218,3256005,3259479,3259921,3264437,3270426,3278911,3281640,3287631,3290128,3294138,3294527,3296860,3298028,3304439,3315032,3315734,3316722,3318288,3322216,3322651,3324891,3326196,3330645,3332279,3340503,3343675,3348524,3359515,3374047,3375029,3376177,3381378,3382426,3407474	3252684,3253819,3255284,3256211,3259554,3260028,3264524,3270562,3278949,3281766,3287790,3290217,3294256,3294629,3296949,3298175,3304543,3315120,3315785,3316793,3318400,3322262,3322696,3324968,3326284,3330682,3332361,3340639,3343731,3348623,3359593,3374154,3375126,3376302,3381498,3382506,3407625	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	65988637	65988674	65988673	+	High_confidence	3	5	20	0.642081	3.616349	chr5	65988722	65989005	SINE|Alu|AluJb	+	chr5	65988632	66078936	ERBIN|ENST00000508515.1	+	65988632,65992709,65994746,66012048,66013548,66014668,66021321,66023289,66024305,66025479,66025847,66026301,66028273,66038382,66043076,66044136,66046352,66048666,66050782,66053405,66076315,66076874,66078422	65988682,65992907,65994864,66012127,66013638,66014725,66021385,66023364,66024450,66025552,66025977,66026417,66028343,66038482,66043198,66044310,66046538,66048781,66050966,66054951,66076408,66076949,66078936	0.850000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	42117109	42117118	42117109	-	RAMPAGE_only	4	4	8	0.256833	2.521641	chr17	42117078	42117181	LINE|CR1|L3	+	chr17	42114223	42115833	KAT2A|ENST00000588759.1	-	42114223,42114357,42114489,42114953,42115722	42114282,42114394,42114604,42115035,42115833	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	155073396	155073397	155073396	+	RAMPAGE_only	5	5	7	0.224729	2.807355	chrX	155073000	155073435	DNA|TcMar-Tigger|Tigger20a	-	chrX	155071531	155123036	BRCC3|ENST00000453705.1	+	155071531,155073373,155077169,155078615,155089262,155090783,155116056,155116710,155119998,155121222	155071654,155073431,155077289,155078703,155089351,155090839,155116188,155116754,155120168,155123036	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	80147991	80148008	80148007	+	High_confidence	2	2	6	0.192624	2.584963	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	26399494	26399495	26399494	-	High_confidence	6	7	8	0.256833	2.750000	chr7	26399411	26399720	DNA|hAT-Charlie|MER33	+	chr7	26372018	26399418	LOC105375304|NR_136272.1	-	26372018,26399340	26372568,26399418	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	13903757	13903764	13903760	-	RAMPAGE_only	11	17	30	0.963122	4.625054	chr5	13902799	13904313	LINE|L1|L1MEd	+	chr5	13690327	13944480	DNAH5|NM_001369.2	-	13690327,13700639,13701283,13708122,13714404,13716486,13717314,13718881,13720999,13727506,13729438,13735130,13735817,13737251,13751077,13752133,13753232,13754202,13758845,13762721,13765975,13768959,13769500,13770748,13776438,13777201,13780828,13786178,13788715,13791993,13793514,13793935,13807590,13809043,13810058,13811646,13814604,13817547,13820345,13823262,13824198,13829509,13830025,13830596,13839355,13840905,13841691,13844836,13850651,13859451,13862547,13864396,13865667,13866219,13867773,13870766,13871563,13876683,13882727,13882903,13884988,13885963,13890975,13894649,13900205,13901251,13902052,13911385,13913742,13914519,13916347,13917142,13919175,13920479,13922106,13923279,13928093,13931109,13944381	13692135,13700871,13701436,13708335,13714620,13716690,13717520,13719101,13721245,13727656,13729560,13735321,13735932,13737495,13751260,13752289,13753549,13754338,13758983,13762901,13766179,13769136,13769615,13770980,13776706,13777355,13780959,13786351,13788914,13792217,13793728,13794058,13807725,13809186,13810260,13811823,13814846,13817694,13820499,13823370,13824333,13829704,13830213,13830775,13839528,13841130,13841904,13844993,13850815,13859605,13862747,13864637,13865906,13866282,13867992,13871002,13871765,13876817,13882815,13883094,13885228,13886129,13891121,13894821,13900412,13901573,13902138,13911493,13913958,13914642,13916455,13917256,13919352,13920617,13922328,13923440,13928178,13931244,13944480	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	77716560	77716648	77716591	-	RAMPAGE_only	7	9	46	1.476787	3.951734	chr4	77716573	77716635	LINE|CR1|L3	-	chr4	77713386	77819368	CNOT6L|ENST00000649644.1	-	77713386,77726166,77728853,77731386,77742140,77744717,77748315,77756861,77773080,77774529,77776270,77819232	77720643,77726369,77729081,77731538,77742295,77744875,77748384,77756951,77773166,77774716,77776392,77819368	0.956522
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	24467225	24467238	24467237	+	RAMPAGE_only	4	4	9	0.288937	2.947703	chr22	24467213	24467377	SINE|MIR|MIR3	+	chr22	24494106	24526668	UPB1|ENST00000415388.5	+	24494106,24502125,24510748,24513323,24515200,24520386,24521985,24523618,24525710	24495507,24502213,24510843,24513485,24515370,24520468,24522028,24523773,24526668	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	121061008	121061017	121061016	+	High_confidence	4	5	9	0.288937	2.750000	chr7	121059787	121061189	LTR|ERV1|LTR12C	+	chr7	121060760	121097815	MSTRG.26081.10	+	121060760,121064237,121097698	121061204,121064313,121097815	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	35408114	35408135	35408134	+	RAMPAGE_only	4	4	9	0.288937	2.750000	chr1	35408149	35408455	LINE|L1|L1ME3G	+	chr1	35361704	35422058	ZMYM4|ENST00000457946.1	+	35361704,35370028,35370371,35381258,35381545,35387002,35387453,35388909,35389947,35392211,35392646,35393594,35396554,35397376,35398412,35398863,35399481,35405022,35405372,35408007,35413971,35415465,35418442,35419469	35361789,35370113,35370627,35381433,35381758,35387278,35387604,35389082,35390098,35392352,35392684,35393739,35396670,35397545,35398466,35399043,35399576,35405194,35405468,35408159,35414083,35415714,35418572,35422058	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	128921399	128921411	128921399	+	High_confidence	56	57	87	2.793055	5.442701	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.919540
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	139132121	139132122	139132121	-	RAMPAGE_only	12	13	18	0.577873	3.734522	chr7	139131920	139132647	LTR|ERV1|ERV24B_Prim-int	+	chr7	139043519	139109719	ZC3HAV1|NM_020119.3	-	139043519,139053450,139053964,139055204,139061035,139064878,139073855,139076285,139078551,139079469,139083779,139089623,139109023	139047853,139053581,139054095,139055295,139061138,139064999,139074030,139076409,139078653,139080243,139084032,139089759,139109719	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	7137097	7137110	7137109	+	RAMPAGE_only	6	6	11	0.353145	2.721928	chr12	7137127	7137213	SINE|MIR|MIR1_Amn	+	chr12	7138681	7143198	CLSTN3|ENST00000544584.1	+	7138681,7141241,7142085,7142868,7143162	7138816,7141404,7142139,7143026,7143198	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	200411670	200411687	200411683	+	High_confidence	10	10	33	1.059434	4.171465	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411693	200478360	AC104461.1|ENST00000647823.1	+	200411693,200444617,200472040,200473908,200477967	200411962,200444945,200472119,200474186,200478360	0.787879
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	3195772	3195773	3195772	-	High_confidence	9	9	13	0.417353	3.085055	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.846154
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	24192091	24192092	24192091	+	RAMPAGE_only	5	5	7	0.224729	2.584963	chr8	24191849	24192335	LTR|ERVL|LTR108b_Mam	+	chr8	24294039	24336099	ADAM28|NR_130709.1	+	24294039,24299973,24309893,24310162,24311360,24320235,24321217,24323833,24326553,24329984,24331149,24332659,24335445	24294195,24300077,24309970,24310241,24311437,24320307,24321289,24324003,24326635,24330115,24331327,24332749,24336099	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	46087105	46087119	46087118	-	High_confidence	7	8	17	0.545769	3.499228	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.764706
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	29077437	29077487	29077486	+	High_confidence	24	25	75	2.407806	5.388902	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.613333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	45701370	45701372	45701371	-	High_confidence	22	39	41	1.316267	4.892407	chr13	45701225	45701731	LTR|ERV1|LTR45C	-	chr13	45680183	45701184	LINC01055|ENST00000435067.2	-	45680183,45682301,45685063,45701026	45681491,45682419,45685200,45701184	0.609756
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	177390422	177390425	177390422	+	High_confidence	3	3	8	0.256833	2.500000	chr5	177390389	177390552	SINE|MIR|MIRb	-	chr5	177389646	177398840	MSTRG.23430.7	+	177389646,177390586,177393693,177394027,177396732,177396949	177390484,177390792,177393763,177394195,177396849,177398840	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	75891303	75891305	75891303	+	RAMPAGE_only	6	11	16	0.513665	3.500000	chr6	75891350	75891661	SINE|Alu|AluY	+	chr6	75890209	75908560	MYO6|ENST00000430435.1	+	75890209,75891227,75892529,75894813,75895230,75907604,75908495	75890265,75891306,75892690,75894840,75895260,75907708,75908560	0.562500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	76041255	76041285	76041263	+	High_confidence	2	2	8	0.256833	2.521641	chr1	76041086	76041403	SINE|Alu|AluSq2	-	chr1	76041690	76066228	AC092813.2|ENST00000434540.1	+	76041690,76066037	76041898,76066228	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	99410146	99410162	99410146	+	High_confidence	4	5	9	0.288937	3.000000	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99409327	99419608	MSTRG.25858.6	+	99409327,99410033,99411063,99416137,99417428,99419390	99409665,99410169,99411186,99416260,99417595,99419608	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	33931121	33931157	33931156	+	High_confidence	7	9	29	0.931018	3.507593	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	63273615	63273654	63273624	-	RAMPAGE_only	8	8	59	1.894140	4.852236	chr18	63273560	63273648	SINE|MIR|MIRc	+	chr18	63123345	63319380	BCL2|NM_000633.2	-	63123345,63318081,63319173	63128759,63318952,63319380	0.830508
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	150853981	150853985	150853984	+	RAMPAGE_only	6	6	11	0.353145	3.095795	chr7	150853740	150854034	SINE|Alu|AluSz	+	chr7	150852518	150857482	AOC1|ENST00000483043.1	+	150852518,150853917,150856454	150852558,150854163,150857482	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	48430180	48430190	48430189	-	High_confidence	6	6	22	0.706290	4.297079	chr3	48430133	48430258	SINE|MIR|MIRb	+	chr3	48413758	48430051	MSTRG.19551.13	-	48413758,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48429252	48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48419674,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48430051	0.954545
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	18402719	18402740	18402739	+	RAMPAGE_only	3	3	7	0.224729	2.807355	chr19	18402467	18403463	LTR|ERVK|LTR5B	+	chr19	18419335	18434562	SSBP4|NM_001009998.3	+	18419335,18427350,18427751,18427897,18430840,18431646,18431792,18431999,18432146,18432558,18432699,18432828,18432972,18433134,18433584,18433709,18434216	18419707,18427423,18427813,18427982,18430930,18431706,18431862,18432070,18432214,18432604,18432735,18432883,18433043,18433213,18433613,18433817,18434562	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	125497347	125497355	125497354	-	RAMPAGE_only	6	6	11	0.353145	3.027169	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	67887353	67887380	67887364	+	High_confidence	2	2	10	0.321041	3.169925	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.600000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	10589739	10589772	10589758	-	High_confidence	2	2	9	0.288937	3.000000	chrX	10589469	10589852	LTR|ERV1|HERVE_a-int	-	chrX	10445555	10589909	MID1|ENST00000380780.5	-	10445555,10454869,10459645,10469696,10474622,10482479,10495583,10523091,10566887,10589586	10449716,10455077,10459807,10469840,10474750,10482628,10495691,10523187,10567603,10589909	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	52570267	52570324	52570323	+	RAMPAGE_only	9	9	24	0.770498	3.762267	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	64293377	64293380	64293379	-	High_confidence	28	50	52	1.669412	5.188758	chr12	64287349	64293377	LINE|L1|L1PA2	-	chr12	64266982	64293383	C12orf56|ENST00000536975.5	-	64266982,64270535,64274900,64275297,64277679,64284663,64285953,64293280	64267288,64270714,64274975,64275372,64277803,64284753,64286060,64293383	0.865385
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	97310612	97310628	97310612	+	RAMPAGE_only	42	52	84	2.696742	5.174191	chrX	97310220	97310731	LINE|L2|L2a	-	chrX	96685016	97469765	DIAPH2|ENST00000373054.5	+	96685016,96735757,96738585,96758153,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348117,97383908,97429649,97469693	96685190,96735790,96738762,96758258,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247841,97348280,97384044,97429745,97469765	0.928571
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	195722479	195722496	195722495	+	RAMPAGE_only	2	2	9	0.288937	2.947703	chr3	195722358	195722503	SINE|MIR|MIRc	-	chr3	195720994	195733504	MUC20|ENST00000320736.10	+	195720994,195724679,195725672,195729647,195733149	195721083,195725159,195726572,195729739,195733504	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	84778198	84778199	84778198	+	High_confidence	7	8	8	0.256833	3.000000	chr15	84778174	84778672	LTR|ERV1|LTR9B	-	chr15	84778259	84802438	ZNF592|ENST00000559607.1	+	84778259,84782656,84790704,84797868,84798314,84798587,84799097,84799841,84801862	84778312,84784895,84790872,84798045,84798474,84798875,84799210,84799977,84802438	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	7138546	7138547	7138546	+	RAMPAGE_only	5	5	7	0.224729	2.584963	chr8	7138366	7138724	LTR|ERVL-MaLR|THE1B	+	chr8	7109286	7187316	AF228730.5|ENST00000649959.1	+	7109286,7112355,7119281,7152717,7186283	7109616,7112518,7119400,7152806,7187316	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	85778503	85778568	85778531	+	High_confidence	21	21	102	3.274616	4.777948	chr4	85778413	85778594	SINE|MIR|MIR3	+	chr4	85778697	86002670	ARHGAP24|NM_001042669.1	+	85778697,85923647,85942065,85972035,85974887,85977569,85994582,86000478	85778965,85923770,85942273,85972168,85974961,85977691,85995657,86002670	0.892157
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	214398167	214398189	214398188	-	RAMPAGE_only	3	3	7	0.224729	2.584963	chr1	214398016	214398444	LINE|L1|L1MA8	+	chr1	214348695	214551223	PTPN14|ENST00000366956.9	-	214348695,214364511,214369456,214372710,214376218,214377958,214383310,214386843,214390987,214393694,214394898,214397912,214401684,214402882,214411683,214414628,214451804,214464629,214551182	214358050,214364675,214369691,214372839,214376437,214378102,214384788,214386922,214391045,214393777,214394986,214398001,214401772,214402953,214411751,214414726,214451974,214464957,214551223	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	2727372	2727379	2727374	-	RAMPAGE_only	5	7	16	0.513665	3.506891	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2530091	2728451	LOC101927815|NR_125425.1	-	2530091,2595564,2596624,2604780,2674729,2728329	2530166,2595703,2596704,2604930,2674845,2728451	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	38301208	38301328	38301208	+	RAMPAGE_only	6	8	53	1.701516	4.718302	chr21	38301096	38301256	DNA|hAT-Charlie|MER5A1	+	chr21	38272422	38301821	KCNJ15|ENST00000398930.5	+	38272422,38285586,38296925,38299243	38272557,38285689,38297023,38301821	0.867925
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	45715967	45715968	45715967	-	High_confidence	8	8	10	0.321041	2.646439	chr14	45715770	45716282	LTR|ERVK|LTR3B_	-	chr14	45706271	45715952	LINC02303|ENST00000555442.1	-	45706271,45711898,45715349	45706502,45711953,45715952	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	79784556	79784567	79784556	+	RAMPAGE_only	3	4	10	0.321041	2.947703	chr5	79778884	79784938	LINE|L1|L1HS	-	chr5	79738141	79800240	CMYA5|ENST00000506603.5	+	79738141,79743826,79745221,79747090,79752675,79758752,79761810,79788970,79790969,79793436,79799369	79739403,79743922,79745455,79747113,79752794,79758902,79763209,79789104,79791069,79793610,79800240	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	72363545	72363576	72363545	-	High_confidence	2	3	13	0.417353	3.546594	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	96934425	96934438	96934425	+	RAMPAGE_only	2	2	9	0.288937	2.725481	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	134467260	134467293	134467264	+	RAMPAGE_only	62	62	143	4.590883	5.607471	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134466184	134487915	AP004608.1|ENST00000528482.6	+	134466184,134467864,134480844,134482626,134485961	134467615,134467987,134480911,134482730,134487915	0.881119
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	78542584	78542632	78542627	+	RAMPAGE_only	8	8	28	0.898914	4.392747	chr4	78542650	78542765	LINE|L2|L2c	+	chr4	78057569	78544269	FRAS1|NM_025074.6	+	78057569,78065984,78237509,78245232,78252391,78255241,78265024,78266833,78267240,78278654,78281397,78282819,78284404,78286404,78308065,78315593,78317367,78318809,78333271,78337673,78363512,78363907,78369837,78372717,78374110,78375738,78379725,78384058,78387374,78400733,78407662,78412968,78418948,78421862,78424387,78429094,78430291,78432356,78438569,78438901,78441161,78445521,78446726,78448052,78450150,78451771,78452174,78464020,78464442,78466207,78469977,78472179,78473437,78475437,78477814,78479373,78481803,78482387,78488874,78496804,78499720,78507420,78508730,78511273,78513391,78515798,78519330,78521522,78522648,78526540,78534448,78536994,78539293,78540530	78058085,78066016,78237617,78245325,78252551,78255375,78265108,78266935,78267432,78278744,78281433,78282967,78284548,78286539,78308209,78315734,78317508,78318986,78333412,78337817,78363665,78364054,78369984,78372858,78374251,78375879,78379996,78384143,78387701,78400887,78407841,78413085,78419063,78422000,78424420,78429226,78430417,78432604,78438718,78439064,78441297,78445712,78446880,78448316,78450339,78451891,78452354,78464145,78464583,78466435,78470091,78472330,78473597,78475606,78478061,78479718,78481964,78482535,78489080,78496961,78499921,78507608,78509006,78511506,78513552,78516013,78519481,78521630,78522808,78526657,78534615,78537200,78539440,78544269	0.928571
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	128860107	128860150	128860148	-	High_confidence	3	9	16	0.513665	3.875000	chr9	128859917	128860360	LTR|ERVL|MLT2B3	-	chr9	128833122	128860532	KYAT1|ENST00000483599.5	-	128833122,128833739,128835322,128835480,128835778,128835996,128836801,128837684,128838050,128842653,128845352,128846679,128859946	128833643,128833826,128835402,128835667,128835868,128836105,128836922,128837813,128838137,128842801,128845517,128846859,128860532	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	24297736	24297753	24297736	-	RAMPAGE_only	6	7	14	0.449457	3.546594	chr3	24297734	24297875	DNA|hAT-Charlie|MER5B	+	chr3	24119042	24486595	THRB|ENST00000646432.1	-	24119042,24127498,24133315,24143500,24146674,24152389,24190073,24228937,24337299,24483922,24486399	24123125,24127757,24133462,24143706,24146822,24152490,24190334,24229001,24337371,24484095,24486595	0.642857
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	3062922	3062983	3062922	-	High_confidence	8	11	42	1.348371	4.737323	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	64226142	64226177	64226158	-	High_confidence	76	78	327	10.498032	7.136504	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.975535
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	39800293	39800314	39800297	-	High_confidence	21	25	127	4.077217	6.210587	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.614173
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	15484469	15484478	15484476	+	RAMPAGE_only	10	13	26	0.834706	4.161978	chr4	15484225	15484878	LINE|L2|L2	-	chr4	15479222	15601546	CC2D2A|ENST00000634028.1	+	15479222,15480703,15502428,15502821,15510138,15511246,15514706,15515867,15516624,15527446,15528619,15533192,15536919,15537898,15540836,15550823,15553157,15555071,15557303,15559164,15560530,15563354,15567376,15567676,15569292,15570397,15579967,15586156,15587815,15589544,15596084,15597406,15599528,15601236	15479328,15480827,15502517,15502923,15510240,15511423,15514869,15516004,15516756,15527656,15528726,15533333,15537076,15538137,15541014,15550980,15553305,15555210,15557507,15559257,15560622,15563522,15567482,15567786,15569389,15570496,15580171,15586246,15587929,15589679,15596207,15597465,15599706,15601546	0.961538
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	152412488	152412529	152412528	-	High_confidence	12	12	32	1.027330	4.174801	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	63852627	63852628	63852627	+	High_confidence	11	11	12	0.385249	3.459432	chr14	63852541	63852636	SINE|MIR|MIR3	-	chr14	63852964	64226449	SYNE2|NM_182914.2	+	63852964,63909097,63940613,63941694,63941884,63942050,63949824,63954718,63961524,63963898,63967708,63976562,63977904,63978851,63980653,63980985,63982629,63983736,63986455,63990410,63990941,63993834,63995043,63996946,63997300,63998218,63998913,64000561,64001933,64002719,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024256,64024911,64025129,64026578,64027483,64029894,64031015,64047999,64049610,64051556,64055943,64062750,64065431,64070644,64073967,64075944,64078465,64080455,64081442,64087670,64089573,64090865,64093348,64097948,64098746,64101931,64107490,64113340,64119426,64120926,64122011,64122285,64125078,64126326,64126597,64128451,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64165284,64167232,64167494,64168876,64170227,64174943,64177357,64186423,64188549,64190070,64202800,64208757,64209427,64209941,64211960,64212810,64214193,64215285,64216247,64218397,64219207,64220436,64221575,64223188,64224460,64224998,64225318	63853143,63909227,63940675,63941790,63941962,63942143,63950006,63954915,63961625,63964000,63967846,63976727,63978017,63979014,63980732,63981173,63982794,63983886,63986617,63990569,63991115,63993969,63995202,63997158,63997391,63998328,63999040,64000719,64002081,64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64022863,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64048155,64049876,64053657,64056266,64062895,64065650,64070910,64074136,64076100,64078606,64080638,64081580,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64122427,64125210,64126479,64126807,64128553,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64165410,64167387,64167639,64168971,64170462,64175138,64177483,64186579,64188708,64190237,64202963,64208945,64209578,64210124,64212098,64213005,64214470,64215354,64216387,64218512,64219410,64220637,64221704,64223380,64224547,64225045,64226449	0.916667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	110118141	110118147	110118146	-	High_confidence	9	10	22	0.706290	4.095795	chr2	110117625	110118184	LINE|L1|L1MD2	-	chr2	110083869	110118045	MSTRG.16408.1	-	110083869,110087571,110091602,110115687,110118016	110085757,110087697,110091770,110115884,110118045	0.954545
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	63618044	63618046	63618045	-	High_confidence	91	130	139	4.462466	6.001810	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.640288
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	49086443	49086547	49086520	+	High_confidence	16	18	71	2.279389	5.420530	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.873239
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	54865642	54865688	54865666	-	RAMPAGE_only	52	54	192	6.163982	5.405040	chr1	54865506	54865684	SINE|MIR|MIRc	-	chr1	54852366	54886836	DHCR24|ENST00000647585.1	-	54852366,54853433,54854036,54865302,54871349,54875092,54875941,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54883773,54886836	0.953125
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	227534916	227534933	227534919	+	RAMPAGE_only	4	4	18	0.577873	3.734522	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.944444
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	33931430	33931457	33931456	+	High_confidence	2	2	8	0.256833	2.807355	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	47067498	47067518	47067498	-	High_confidence	746	797	2840	91.175572	6.139646	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.953521
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	81170392	81170427	81170419	-	High_confidence	36	36	202	6.485023	5.969996	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.886139
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	32059144	32059156	32059155	+	High_confidence	3	3	8	0.256833	2.521641	chr22	32059153	32059234	SINE|Alu|AluSz6	+	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	156367865	156367879	156367865	-	High_confidence	4	4	12	0.385249	3.277613	chr1	156367719	156368094	LINE|L2|L2c	+	chr1	156318869	156367859	CCT3|ENST00000413555.5	-	156318869,156320838,156324971,156333546,156334712,156334867,156335826,156367743	156319017,156321025,156325089,156333643,156334775,156334918,156335888,156367859	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	141332616	141332617	141332616	-	High_confidence	421	423	456	14.639458	4.744034	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.953947
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	122218272	122218273	122218272	-	High_confidence	4	5	7	0.224729	2.807355	chr12	122218031	122218232	DNA|hAT-Charlie|MER58A	-	chr12	122208315	122218289	DIABLO|ENST00000439489.6	-	122208315,122209696,122216487,122216758,122218265	122208577,122209858,122216584,122216869,122218289	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	121914806	121914809	121914806	+	High_confidence	5	5	9	0.288937	2.500000	chr3	121914749	121914875	SINE|Alu|AluYc	+	chr3	121914924	121923130	SLC15A2|ENST00000489886.1	+	121914924,121915226,121915615,121922219,121922774,121923039	121915040,121915317,121915693,121922302,121922861,121923130	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	69794386	69794387	69794386	+	RAMPAGE_only	7	7	8	0.256833	2.807355	chr2	69793262	69794493	LTR|ERV1|LTR25-int	-	chr2	69742131	69818655	ANXA4|ENST00000635311.1	+	69742131,69781519,69788053,69804532,69806384,69807905,69810593,69812652,69816100,69818598	69742175,69781574,69788141,69804627,69806432,69807996,69811456,69812709,69816194,69818655	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	69237164	69237180	69237169	-	RAMPAGE_only	3	3	18	0.577873	3.947703	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	174874418	174874454	174874418	+	High_confidence	34	37	149	4.783507	6.340419	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.604027
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	140700445	140700452	140700445	+	High_confidence	1582	1894	3177	101.994645	5.044040	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.987724
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	2990748	2990761	2990748	-	RAMPAGE_only	18	18	38	1.219955	3.502071	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.868421
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	107872865	107872909	107872865	-	RAMPAGE_only	3	3	18	0.577873	3.572469	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.944444
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	27367612	27367613	27367612	-	RAMPAGE_only	5	5	8	0.256833	2.807355	chr6	27367435	27367797	LTR|ERVL-MaLR|MSTA	-	chr6	27357822	27371525	ZNF204P|NR_002722.2	-	27357822,27363178,27367516,27370135	27360221,27363302,27367612,27371525	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	4239748	4239749	4239748	-	High_confidence	9	9	11	0.353145	2.663533	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	31466392	31466393	31466392	-	High_confidence	7	7	10	0.321041	3.169925	chr5	31466363	31466531	DNA|TcMar-Mariner|MARNA	-	chr5	31449368	31466486	DROSHA|ENST00000507174.1	-	31449368,31451532,31464235,31466181	31449419,31451640,31464343,31466486	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	71417011	71417038	71417037	+	RAMPAGE_only	6	6	14	0.449457	3.700440	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.785714
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	153487628	153487629	153487628	-	RAMPAGE_only	7	7	9	0.288937	2.725481	chrX	153487559	153487609	SINE|MIR|MIR3	-	chrX	153461559	153495516	HAUS7|ENST00000370210.3	-	153461559,153462609,153464987,153469145,153470449,153495373	153462067,153462671,153465055,153469261,153471145,153495516	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	123758091	123758126	123758125	-	High_confidence	8	9	29	0.931018	4.351823	chr9	123758093	123758254	SINE|MIR|MIRb	-	chr9	123569544	123757759	DENND1A|ENST00000474676.1	-	123569544,123583168,123609435,123630375,123652012,123667025,123671290,123757702	123569595,123583270,123609481,123630476,123652123,123667079,123671371,123757759	0.793103
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	70590308	70590335	70590319	+	RAMPAGE_only	3	3	11	0.353145	3.459432	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	56350319	56350356	56350355	-	High_confidence	3	3	10	0.321041	3.121928	chr12	56350339	56350380	DNA|hAT-Tip100|MER91C	+	chr12	56341596	56349775	STAT2|ENST00000556539.5	-	56341596,56343824,56346145,56346441,56346818,56348528,56348751,56348923,56349162,56349425,56349588	56343531,56344135,56346203,56346624,56346955,56348623,56348804,56349059,56349261,56349509,56349775	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	7566514	7566538	7566514	-	High_confidence	28	32	122	3.916697	6.187216	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.647541
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	95872192	95872193	95872192	-	High_confidence	399	462	499	16.019933	6.745248	chr15	95871988	95872367	LTR|ERV1|LTR12B	-	chr15	95847448	95872189	MSTRG.10086.1	-	95847448,95871988	95867013,95872189	0.545090
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	65570509	65570536	65570519	+	High_confidence	80	125	487	15.634684	7.033042	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.626283
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	98988460	98988461	98988460	-	RAMPAGE_only	70	74	77	2.472014	4.243275	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98793486	98978084	DOCK9|NM_001130048.1	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,98977783	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,98978084	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	70085713	70085747	70085746	-	High_confidence	7	13	27	0.866810	4.606739	chr2	70085547	70085755	SINE|MIR|MIR	+	chr2	69996771	70085854	PCBP1-AS1|ENST00000629485.2	-	69996771,70051202,70053730,70055713,70059642,70083537,70085546,70085815	69996888,70051305,70053792,70055910,70059680,70083687,70085624,70085854	0.518519
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	208824192	208824194	208824192	+	RAMPAGE_only	9	15	21	0.674186	4.021928	chr2	208824105	208824501	LTR|ERVL|ERVL-E-int	+	chr2	208542641	208825587	LOC101927960|NR_136588.1	+	208542641,208572012,208656825,208819551,208824194,208825398	208542991,208572167,208656989,208819655,208824350,208825587	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	20439859	20439860	20439859	-	High_confidence	7	7	9	0.288937	2.500000	chr13	20439856	20440379	LTR|ERV1|MER39	+	chr13	20431617	20439904	CRYL1|ENST00000645525.1	-	20431617,20439592	20432296,20439904	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	246417412	246417413	246417412	-	High_confidence	5	5	8	0.256833	3.000000	chr1	246417275	246418033	LTR|ERV1|LTR8B	-	chr1	245749339	246417412	SMYD3|NM_022743.2	-	245749339,245764040,245858495,245863798,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246417295	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246417412	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	80715164	80715166	80715164	+	High_confidence	5	9	11	0.353145	2.921928	chr5	80715016	80715168	SINE|MIR|MIRb	+	chr5	80715204	80761610	MSH3|ENST00000512258.1	+	80715204,80725452,80728850,80741463,80744505,80761545	80715393,80725565,80728965,80741548,80744615,80761610	0.636364
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	2917810	2917898	2917810	-	RAMPAGE_only	6	6	30	0.963122	4.256565	chrX	2917473	2917770	SINE|Alu|AluJo	-	chrX	2903969	2929351	ARSD|ENST00000381154.5	-	2903969,2908720,2909816,2910658,2915555,2917803,2920600,2921902,2925615,2929231	2907632,2908842,2909979,2910793,2915692,2918227,2920723,2922024,2925765,2929351	0.900000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	38255240	38255249	38255245	+	RAMPAGE_only	5	5	15	0.481561	3.323231	chr21	38254981	38255285	LINE|L2|L2c	-	chr21	38256697	38301826	KCNJ15|NM_001276435.1	+	38256697,38257045,38296925,38298143,38299243	38256787,38257185,38297023,38298282,38301826	0.933333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73837695	73837738	73837717	-	RAMPAGE_only	2	2	11	0.353145	3.121928	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	117492028	117492060	117492028	-	RAMPAGE_only	4	6	19	0.609977	3.892407	chr10	117491808	117492291	LTR|ERVL|LTR33	-	chr10	117490648	117494688	EMX2OS|ENST00000423419.1	-	117490648,117492020,117494568	117490911,117492109,117494688	0.684211
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	75127298	75127317	75127298	-	RAMPAGE_only	10	10	18	0.577873	3.155222	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.777778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	123179165	123179221	123179220	-	RAMPAGE_only	9	9	29	0.931018	4.593069	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.758621
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73999753	73999856	73999855	+	RAMPAGE_only	9	10	63	2.022557	5.241335	chrX	73999206	73999999	LINE|L1|L1M3de	+	chrX	73944341	74000491	JPX|ENST00000414209.5	+	73944341,73944583,73946998,73998767,73998953	73944465,73944662,73947374,73998844,74000491	0.968254
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	4726820	4726821	4726820	-	RAMPAGE_only	7	7	11	0.353145	3.121928	chr9	4725911	4728263	DNA|TcMar-Tigger|Tigger1	-	chr9	4712044	4741227	MSTRG.27786.4	-	4712044,4718418,4719134,4722505,4726082,4740936	4713096,4718537,4719307,4722625,4727924,4741227	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	2881285	2881286	2881285	-	High_confidence	10	10	10	0.321041	3.121928	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	40276084	40276130	40276129	-	High_confidence	5	5	14	0.449457	3.026987	chr6	40276009	40276220	SINE|MIR|MIR3	+	chr6	40271565	40276237	AL139275.2|ENST00000444731.1	-	40271565,40276005,40276214	40271960,40276126,40276237	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100829513	100829630	100829513	+	High_confidence	19	19	87	2.793055	5.520750	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.965517
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	123630173	123630184	123630183	-	RAMPAGE_only	3	4	8	0.256833	2.807355	chr12	123629883	123630152	SINE|MIR|MIR	-	chr12	123621737	123632447	EIF2B1|ENST00000539951.5	-	123621737,123622635,123626424,123627043,123630168,123630396,123632344	123621920,123622761,123626493,123627156,123630285,123630533,123632447	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	33931224	33931235	33931224	+	High_confidence	11	12	21	0.674186	3.136864	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.809524
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	52569721	52569722	52569721	-	High_confidence	6	6	6	0.192624	2.584963	chr15	52569688	52569809	LINE|L2|L2	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	20658591	20658608	20658607	+	High_confidence	5	8	17	0.545769	3.250000	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.588235
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	34677490	34677553	34677552	+	High_confidence	32	36	90	2.889367	5.928520	chr2	34677192	34677662	LTR|ERV1|LTR2B	+	chr2	34677554	34737468	LINC01320|ENST00000625995.2	+	34677554,34710451,34713578,34732447,34735646,34737320	34677927,34710513,34713773,34732557,34735686,34737468	0.688889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	77088097	77088116	77088097	+	High_confidence	3	3	11	0.353145	3.095795	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088058	77148533	ZBED3-AS1|ENST00000646953.1	+	77088058,77118319,77147651	77088472,77118521,77148533	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	171604118	171604130	171604122	+	High_confidence	11	12	33	1.059434	4.680758	chr1	171602818	171606351	LTR|ERV1|Harlequin-int	+	chr1	171604119	171626888	MYOCOS|ENST00000636788.1	+	171604119,171614797,171623840,171626453	171604377,171615005,171623978,171626888	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	139364719	139364741	139364719	+	RAMPAGE_only	4	4	17	0.545769	3.750000	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.705882
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	18851423	18851443	18851431	-	RAMPAGE_only	5	5	13	0.417353	3.584963	chr8	18851419	18851578	SINE|tRNA-Deu|AmnSINE2	-	chr8	18765448	18854374	PSD3|ENST00000519851.5	-	18765448,18799294,18801269,18804521,18804703,18854097	18765538,18799353,18801382,18804602,18804898,18854374	0.538462
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	45522796	45522823	45522796	-	High_confidence	2	2	9	0.288937	2.947703	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	50754760	50754774	50754773	-	RAMPAGE_only	5	8	11	0.353145	3.459432	chr14	50754738	50754803	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	96638014	96638031	96638014	-	High_confidence	3	3	13	0.417353	3.251629	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96610725	96638378	MSTRG.16272.12	-	96610725,96611063,96612281,96612461,96612817,96613487,96619358,96619671,96631311,96638282	96610883,96611138,96612353,96612563,96612934,96613619,96619544,96619762,96637185,96638378	0.538462
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	86938472	86938475	86938474	-	RAMPAGE_only	12	15	22	0.706290	3.984184	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86892213	86922104	AP001528.2|ENST00000528660.1	-	86892213,86896412,86921235	86892372,86896540,86922104	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	79989885	79989890	79989885	+	RAMPAGE_only	8	8	13	0.417353	3.418296	chr9	79989802	79989919	LINE|L1|L1MC5a	-	chr9	79975022	80034555	LINC01507|NR_121212.1	+	79975022,79975553,79989956,80030583,80034300	79975222,79975831,79990064,80030769,80034555	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	69142141	69142170	69142149	+	RAMPAGE_only	4	4	13	0.417353	3.392747	chr16	69142005	69142409	LINE|L1|HAL1	-	chr16	69132657	69167842	UTP4|ENST00000563094.5	+	69132657,69133457,69136695,69137800,69139824,69143177,69150536,69150812,69153583,69154392,69155870,69157083,69160355,69163082,69165340	69132689,69133618,69136887,69137885,69139914,69143389,69150708,69150904,69153680,69154457,69155993,69157240,69160462,69163178,69167842	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	43490724	43490815	43490776	-	RAMPAGE_only	8	8	43	1.380475	4.665734	chr3	43490741	43491230	LTR|ERV1|MER50	+	chr3	43366347	43621965	ANO10|ENST00000350459.8	-	43366347,43432610,43549719,43555277,43561219,43565652,43574808,43580352,43598531,43600383,43605713,43621908	43366974,43432727,43549848,43555469,43561402,43565727,43574864,43580472,43598666,43600581,43605863,43621965	0.860465
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	12927662	12927663	12927662	+	High_confidence	4	5	7	0.224729	2.521641	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	31587201	31587275	31587201	+	High_confidence	10	10	42	1.348371	4.076027	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	79461505	79461519	79461505	+	RAMPAGE_only	3	4	12	0.385249	3.459432	chr7	79461215	79461508	LINE|CR1|L3	+	chr7	79458410	79467470	MAGI2-AS3|ENST00000452320.3	+	79458410,79459535	79458999,79467470	0.916667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	31587007	31587021	31587020	+	High_confidence	10	10	35	1.123643	4.386426	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	128619056	128619062	128619061	+	RAMPAGE_only	6	6	11	0.353145	2.663533	chr7	128619037	128619073	LINE|L2|L2c	-	chr7	128574750	128652334	MSTRG.26135.3	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294,128629393,128631679,128638773,128641202,128642216,128648791,128651037,128651188	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626530,128629458,128631869,128638897,128641379,128642281,128648982,128651095,128652334	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	19386333	19386370	19386333	-	High_confidence	7	9	27	0.866810	4.056021	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.962963
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	8649431	8649442	8649431	+	RAMPAGE_only	2	2	6	0.192624	2.584963	chr20	8649465	8649857	LTR|ERVL-MaLR|MSTC	+	chr20	8658620	8968360	PLCB1|ENST00000487210.5	+	8658620,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448,8788632,8789517,8790174,8802055,8962195,8965089,8967219	8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788525,8788722,8789575,8790261,8802173,8963010,8965151,8968360	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	55618850	55618904	55618850	-	High_confidence	16	19	57	1.829932	5.244999	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	113375461	113375490	113375461	-	High_confidence	1	1	8	0.256833	2.521641	chr9	113375358	113375529	SINE|MIR|MIR3	-	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	204711510	204711511	204711510	+	RAMPAGE_only	7	7	10	0.321041	2.503258	chr2	204711451	204711528	LINE|L1|L1MD1	+	chr2	204666611	204766887	MSTRG.17114.9	+	204666611,204686180,204687420	204668602,204687147,204766887	0.900000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	83179178	83179179	83179178	+	RAMPAGE_only	35	35	35	1.123643	4.183014	chr15	83178896	83179386	LTR|ERVL|LTR53	+	chr15	83180801	83184796	AC103876.1|ENST00000561498.1	+	83180801,83184647	83181021,83184796	0.685714
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	102431228	102431260	102431247	-	High_confidence	20	23	87	2.793055	5.120993	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.896552
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	168093050	168093063	168093050	-	High_confidence	3	3	12	0.385249	3.277613	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	144853484	144853556	144853555	-	High_confidence	7	7	49	1.573100	4.971653	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	0.918367
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	31515506	31515541	31515506	-	RAMPAGE_only	1	1	9	0.288937	2.750000	chr5	31515356	31515548	DNA|hAT-Charlie|MER5A	-	chr5	31514993	31526326	DROSHA|ENST00000512302.1	-	31514993,31515453,31526078	31515219,31515564,31526326	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	95256554	95256560	95256554	+	RAMPAGE_only	2	3	7	0.224729	2.584963	chr12	95256546	95256581	SINE|MIR|MIR	+	chr12	95251944	95301172	VEZT|ENST00000356859.8	+	95251944,95256549,95257149,95262905,95266356,95270050,95274741,95282312,95287663,95294271,95296050,95299093	95252071,95256622,95257239,95263081,95266632,95270188,95274889,95282644,95287857,95294372,95296258,95301172	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	15006394	15006422	15006394	+	RAMPAGE_only	14	16	27	0.866810	4.053661	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.629630
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	71417102	71417126	71417125	+	RAMPAGE_only	5	5	17	0.545769	3.702820	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.764706
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	9140390	9140428	9140393	+	High_confidence	42	42	173	5.554005	6.339620	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.763006
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	20475582	20475609	20475608	+	RAMPAGE_only	4	4	10	0.321041	3.321928	chr12	20475443	20475712	SINE|Alu|AluSz	+	chr12	20465442	20626784	MSTRG.6006.3	+	20465442,20556659,20613442,20616229,20621295	20504710,20556710,20613700,20616384,20626784	0.900000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	32953917	32953984	32953939	+	RAMPAGE_only	4	4	28	0.898914	4.546594	chr11	32953932	32953995	LINE|CR1|L3	-	chr11	32934583	32975630	QSER1|ENST00000524678.1	+	32934583,32953856,32955295,32955987,32957868,32966299,32969045,32973396,32975247	32935435,32954179,32955412,32956121,32958086,32966437,32969143,32973549,32975630	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	25966358	25966367	25966358	+	RAMPAGE_only	3	3	7	0.224729	2.807355	chr6	25966328	25966383	LTR|ERV1|LTR29	-	chr6	25962801	25991226	TRIM38|ENST00000357085.4	+	25962801,25963048,25966334,25969324,25971868,25973053,25973172,25983163	25962855,25963282,25966933,25969420,25972099,25973076,25973285,25991226	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	167472807	167472811	167472807	-	High_confidence	27	31	41	1.316267	4.533785	chr6	167472650	167472987	LTR|ERVL-MaLR|THE1B	-	chr6	167459257	167472790	LOC105378127|NR_134591.1	-	167459257,167462508,167463443,167472733	167459519,167462672,167463591,167472790	0.975610
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	35732423	35732456	35732455	-	High_confidence	4	5	22	0.706290	3.884184	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	12555612	12555613	12555612	-	High_confidence	321	321	444	14.254209	6.160039	chr7	12555201	12556721	LTR|ERV1|LTR12C	-	chr7	12554975	12555636	MSTRG.25165.1	-	12554975	12555636	0.959459
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	231072232	231072255	231072232	+	RAMPAGE_only	5	5	17	0.545769	3.702820	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.882353
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	35713360	35713389	35713369	-	High_confidence	3	3	11	0.353145	2.646439	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.818182
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	35263412	35263438	35263433	+	RAMPAGE_only	5	5	14	0.449457	3.546594	chr20	35263264	35263726	LINE|L2|L2b	+	chr20	35226735	35277001	MMP24|NM_006690.3	+	35226735,35246839,35251904,35254449,35263790,35267204,35269759,35271568,35274271	35226984,35246988,35252021,35254754,35263952,35267419,35269898,35271835,35277001	0.785714
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	32601311	32601321	32601313	+	RAMPAGE_only	2	3	7	0.224729	2.807355	chr12	32601190	32601318	SINE|MIR|MIRb	-	chr12	32582378	32644751	FGD4|ENST00000494977.1	+	32582378,32598496,32600409,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624658,32624975,32625653,32633548,32637649,32638654,32640275,32642760,32644593	32582467,32598586,32600509,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32624751,32625068,32625779,32633689,32637855,32638795,32640453,32642842,32644751	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	194649196	194649226	194649225	-	High_confidence	8	8	16	0.513665	2.905639	chr3	194649170	194649366	LINE|L2|L2c	+	chr3	194642172	194649019	LSG1|ENST00000460584.1	-	194642172,194644572,194646163,194648680	194642247,194644746,194646243,194649019	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	100303230	100303232	100303230	-	High_confidence	5	7	11	0.353145	2.732159	chr8	100303086	100303537	LTR|ERVL-MaLR|MLT1D	-	chr8	100287906	100303230	RNF19A|ENST00000432381.2	-	100287906,100303159	100288267,100303230	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	53030022	53030110	53030109	-	High_confidence	392	393	1649	52.939619	7.143266	chr10	53029943	53030661	LTR|ERV1|LTR30	-	chr10	53025313	53030124	MSTRG.3321.2	-	53025313,53029891	53026127,53030124	0.573681
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	103577211	103577212	103577211	+	High_confidence	6	7	7	0.224729	2.584963	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	42809482	42809490	42809482	+	High_confidence	8	8	16	0.513665	3.750000	chr3	42809252	42809581	LTR|ERV1|MER39	-	chr3	42809491	42864876	ACKR2|ENST00000497921.2	+	42809491,42819630,42839093,42864465	42809532,42819711,42839279,42864876	0.562500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	208542641	208542768	208542641	+	High_confidence	702	722	2438	78.269734	7.851389	chr2	208542564	208543130	LTR|ERVL|MLT2B3	-	chr2	208542641	208825587	LOC101927960|NR_136588.1	+	208542641,208572012,208656825,208819551,208824194,208825398	208542991,208572167,208656989,208819655,208824350,208825587	0.792863
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	53464774	53464816	53464815	+	RAMPAGE_only	6	6	36	1.155747	4.400432	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.944444
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	20685269	20685330	20685297	-	High_confidence	3	3	16	0.513665	3.456565	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.937500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	1579495	1579508	1579495	-	RAMPAGE_only	2	2	7	0.224729	2.584963	chr5	1578346	1579846	LTR|ERVK|HERVK9-int	-	chr5	1577771	1594620	MSTRG.22055.3	-	1577771,1589246,1593112,1594394	1585133,1589365,1593284,1594620	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	34918378	34918379	34918378	+	RAMPAGE_only	11	13	17	0.545769	2.977217	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	0.941176
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	693367	693391	693367	+	RAMPAGE_only	28	29	123	3.948801	4.936118	chr2	693114	693473	LTR|ERV1|MER57B1	+	chr2	680080	697371	AC092159.2|ENST00000435573.1	+	680080,696540,697146	680151,696670,697371	0.699187
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	70106420	70106447	70106439	+	RAMPAGE_only	9	9	21	0.674186	4.070656	chr17	70106432	70106486	SINE|MIR|MIRc	-	chr17	70103324	70135603	MSTRG.13024.8	+	70103324,70108300,70124558,70130878,70131994	70106788,70108381,70124612,70130975,70135603	0.619048
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	182030747	182030784	182030747	+	High_confidence	11	11	39	1.252059	4.445544	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.846154
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	132403653	132403703	132403702	-	High_confidence	7	7	32	1.027330	4.297276	chr6	132403664	132403864	LINE|L2|L2c	+	chr6	132315696	132403733	MSTRG.24691.5	-	132315696,132320628,132322678,132323930,132328012,132328414,132372607,132372829,132374630,132401162,132403495	132315777,132320688,132322870,132324097,132328115,132328594,132372691,132372997,132374777,132402079,132403733	0.843750
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	120467861	120467886	120467861	-	RAMPAGE_only	2	4	10	0.321041	2.725481	chr9	120467655	120467825	SINE|Alu|AluJr	-	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.900000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	39809803	39809865	39809864	-	High_confidence	12	14	68	2.183077	5.030639	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.647059
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	135604831	135604838	135604837	+	RAMPAGE_only	27	28	40	1.284163	4.958354	chr5	135604798	135605008	SINE|MIR|MIR	+	chr5	135609311	135813109	SLC25A48|ENST00000647391.1	+	135609311,135629236,135634768,135671663,135714681,135812522	135609728,135629376,135634956,135671747,135714821,135813109	0.775000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	6927314	6927319	6927318	+	RAMPAGE_only	6	6	13	0.417353	3.084963	chr4	6927305	6927415	SINE|MIR|MIR	+	chr4	6909844	7033111	TBC1D14|ENST00000409757.8	+	6909844,6923372,6967303,6994183,6996324,6999084,7001144,7004843,7006631,7009876,7010652,7014447,7025003,7030326	6909951,6924111,6967424,6994302,6996407,6999202,7001251,7004924,7006726,7009948,7010781,7014557,7025262,7033111	0.846154
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	17014112	17014149	17014135	+	RAMPAGE_only	2	2	10	0.321041	3.169925	chr9	17013826	17014266	LTR|ERVL|MLT2B1	+	chr9	17018519	17112815	AL162725.2|ENST00000430545.3	+	17018519,17048918,17112272	17018789,17049041,17112815	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	64990705	64990712	64990711	-	High_confidence	7	7	12	0.385249	3.418296	chr7	64990323	64990915	LTR|ERV1|LTR4	-	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	55892972	55892993	55892972	+	High_confidence	6	7	26	0.834706	3.530964	chr18	55887412	55893439	LINE|L1|L1PA3	-	chr18	55893037	56023462	AC009271.1|ENST00000589440.1	+	55893037,56017727,56023401	55893442,56017779,56023462	0.923077
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	80715247	80715271	80715248	+	High_confidence	10	13	25	0.802602	4.323856	chr5	80715199	80715329	LINE|L2|L2a	-	chr5	80715204	80761610	MSH3|ENST00000512258.1	+	80715204,80725452,80728850,80741463,80744505,80761545	80715393,80725565,80728965,80741548,80744615,80761610	0.840000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	78209165	78209181	78209165	-	RAMPAGE_only	6	6	17	0.545769	3.969816	chr5	78209111	78209729	LTR|ERV1|MER4B	+	chr5	78002325	78294692	AP3B1|ENST00000519295.5	-	78002325,78015409,78020691,78034360,78039042,78089392,78100952,78110206,78113751,78116125,78128029,78129120,78141142,78156257,78162818,78165609,78175625,78175783,78177338,78181506,78216054,78225541,78227371,78228143,78240861,78267519,78294439	78003055,78015548,78020789,78034445,78039274,78089499,78101025,78110354,78113923,78116234,78128160,78129307,78141319,78156367,78162951,78165672,78175697,78175838,78177436,78181662,78216237,78225608,78227532,78228239,78240936,78267595,78294692	0.823529
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	21013095	21013103	21013102	-	RAMPAGE_only	10	14	33	1.059434	4.687500	chr1	21012696	21013221	LINE|L1|L1PBa	+	chr1	20806469	21050994	EIF4G3|ENST00000264211.12	-	20806469,20810737,20813157,20817391,20825099,20827616,20829146,20840855,20849414,20851257,20853559,20854977,20857402,20860384,20862227,20864475,20865115,20879322,20886200,20893516,20895367,20899696,20904882,20941490,20950002,20969473,20973001,20980333,20981047,21002712,21050865	20807500,20810884,20813239,20817538,20825198,20827698,20829272,20841028,20849530,20851478,20853677,20855071,20857497,20860517,20862332,20864712,20865262,20879520,20886371,20893636,20895501,20899943,20904971,20942330,20950111,20969596,20973099,20980448,20981227,21002808,21050994	0.848485
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	65388050	65388061	65388060	+	RAMPAGE_only	3	3	8	0.256833	2.807355	chr1	65387775	65388183	LINE|L2|L2b	-	chr1	65309544	65415276	DNAJC6|ENST00000371069.4	+	65309544,65364634,65365884,65366047,65379401,65384192,65385711,65386811,65388335,65389255,65389546,65392430,65394897,65398812,65401760,65405869,65408640,65411249,65412923	65309938,65364785,65365934,65366196,65379524,65384326,65385906,65386929,65388415,65389449,65389627,65392865,65395032,65398881,65401880,65406133,65408783,65411426,65415276	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	12555345	12555408	12555345	-	High_confidence	10	11	61	1.958349	5.151889	chr7	12555201	12556721	LTR|ERV1|LTR12C	-	chr7	12554975	12555636	MSTRG.25165.1	-	12554975	12555636	0.803279
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	109498844	109498875	109498874	-	High_confidence	4	4	10	0.321041	3.121928	chr9	109498741	109499030	LINE|L2|L2a	+	chr9	109375693	109498313	PTPN3|ENST00000262539.7	-	109375693,109381651,109382301,109383306,109389232,109391137,109391470,109404447,109406461,109408320,109409998,109410228,109420423,109422717,109426949,109428620,109433072,109436882,109438113,109445239,109448810,109454495,109457172,109457291,109463296,109498218	109379633,109381787,109382447,109383551,109389379,109391199,109391561,109404608,109406618,109408377,109410076,109410415,109420600,109422852,109427122,109428684,109433161,109436970,109438234,109445292,109448855,109454574,109457215,109457399,109463451,109498313	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	50182071	50182148	50182110	-	RAMPAGE_only	3	3	19	0.609977	4.142664	chr15	50181935	50182071	SINE|MIR|MIRb	-	chr15	49859638	50119226	ATP8B4|ENST00000558906.5	-	49859638,49862244,49866345,49876277,49879375,49897291,49898067,49901091,49916933,49918838,49920245,49923378,49934016,49961976,49972581,49979616,49981205,49987390,49996676,50002152,50010844,50018888,50038767,50044593,50047350,50074126,50106938,50119122	49860475,49862375,49866484,49876523,49879459,49897515,49898251,49901239,49917039,49918950,49920410,49923494,49934182,49962020,49972790,49979813,49981294,49987549,49996759,50002223,50010917,50018976,50038829,50044692,50047464,50074185,50107008,50119226	0.526316
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	158660263	158660264	158660263	+	High_confidence	6	7	8	0.256833	3.000000	chr3	158660248	158660547	SINE|Alu|AluSq2	-	chr3	158660263	158665407	GFM1|ENST00000490261.1	+	158660263,158660873,158662627,158665336	158660624,158660975,158662684,158665407	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	58927737	58927740	58927737	+	High_confidence	5	5	10	0.321041	2.947703	chr11	58927656	58928383	LTR|ERVK|HERVK22-int	-	chr11	58927700	58956405	GLYATL1|ENST00000317391.8	+	58927700,58942539,58943542,58947045,58947857,58954769,58955175,58955609	58927829,58942584,58943666,58947165,58947965,58954896,58955353,58956405	0.900000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	129001512	129001524	129001523	-	RAMPAGE_only	2	3	7	0.224729	2.584963	chr3	129001421	129001474	DNA|hAT-Tip100?|MamRep1879	-	chr3	128970935	128994143	KIAA1257|NM_020741.2	-	128970935,128975778,128976978,128978044,128987615,128988727,128993042,128993979	128971433,128975903,128977066,128978185,128987829,128988918,128993336,128994143	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	15460147	15460161	15460160	+	RAMPAGE_only	3	3	6	0.192624	2.584963	chr9	15460106	15460234	LINE|L1|L1M5	-	chr9	15447111	15471392	MSTRG.27858.7	+	15447111,15451319,15453040,15459718	15447244,15451402,15458067,15471392	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	142684053	142684077	142684076	+	RAMPAGE_only	2	2	6	0.192624	2.584963	chr3	142683987	142684094	LINE|RTE-BovB|MamRTE1	+	chr3	142689629	142698438	PLS1|ENST00000483507.1	+	142689629,142694468,142697952	142689813,142694547,142698438	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	174410097	174410108	174410097	+	High_confidence	4	4	12	0.385249	3.084963	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410081	174427895	SCRN3|ENST00000549848.5	+	174410081,174422884,174424474,174427712	174410503,174423047,174424649,174427895	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	39021125	39021147	39021125	+	High_confidence	7	7	31	0.995226	4.582119	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.935484
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	52891300	52891321	52891320	-	High_confidence	2	2	8	0.256833	2.521641	chr19	52891172	52891371	SINE|Alu|AluSz	+	chr19	52876171	52891346	ZNF320|NM_207333.2	-	52876171,52888126,52890240,52891228	52881983,52888253,52890328,52891346	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	193656716	193656758	193656716	+	High_confidence	15	16	42	1.348371	4.921928	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193656709	193697526	MSTRG.20720.30	+	193656709,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193656903,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193697526	0.928571
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	123179083	123179131	123179130	-	RAMPAGE_only	5	5	17	0.545769	3.572469	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	176463293	176463306	176463293	+	High_confidence	3	3	8	0.256833	3.000000	chr1	176462794	176463370	LTR|ERV1|MER41E	+	chr1	176463170	176691204	PAPPA2|ENST00000367661.7	+	176463170,176555406,176594523,176670969,176690136	176463418,176557241,176595595,176671115,176691204	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	50756839	50756862	50756861	+	High_confidence	4	5	11	0.353145	2.921928	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	179877343	179877348	179877343	-	High_confidence	4	4	8	0.256833	2.521641	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179865064	179877790	TOR1AIP2|ENST00000495650.1	-	179865064,179877692	179865854,179877790	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	85141103	85141114	85141113	+	RAMPAGE_only	4	5	9	0.288937	3.169925	chr12	85140380	85141167	LINE|L1|L1MEg	-	chr12	85036370	85245105	LRRIQ1|ENST00000393217.6	+	85036370,85038152,85040489,85044717,85046019,85047246,85052176,85055546,85065261,85066747,85072906,85098354,85098866,85104003,85106521,85121696,85124069,85127831,85137849,85152279,85153023,85153662,85154011,85160612,85229516,85232695,85244788	85036407,85038308,85040601,85044809,85046137,85047470,85052251,85057184,85065414,85066898,85073098,85098548,85098994,85104077,85106615,85121876,85124519,85128033,85137969,85152369,85153145,85153758,85154094,85160714,85229649,85232756,85245105	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	6493553	6493572	6493553	-	High_confidence	3	3	15	0.481561	3.521641	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	0.933333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	58078238	58078239	58078238	-	RAMPAGE_only	5	5	7	0.224729	2.521641	chr14	58077819	58078371	LINE|CR1|L3	-	chr14	58000760	58152213	ARMH4|ENST00000267485.7	-	58000760,58005047,58012118,58096723,58131511,58133089,58137989,58152074	58004804,58005182,58012150,58096981,58131721,58133341,58139414,58152213	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	169280830	169280848	169280830	-	RAMPAGE_only	2	3	9	0.288937	3.169925	chr2	169280602	169280810	SINE|MIR|MIRc	-	chr2	169127108	169362534	LRP2|ENST00000649046.1	-	169127108,169129012,169132573,169137391,169138576,169139250,169139542,169140454,169142673,169145746,169146738,169150897,169152798,169154459,169156273,169157370,169162471,169165931,169168538,169169701,169170550,169172014,169173095,169173918,169175192,169176410,169177802,169181447,169182166,169185502,169187969,169191831,169193760,169196910,169198785,169201627,169202755,169203981,169205478,169206022,169206329,169209452,169211967,169213656,169216252,169220453,169225309,169226421,169231713,169233410,169235839,169237102,169238090,169239526,169240987,169242955,169243402,169244692,169246704,169247377,169256105,169257123,169259024,169270903,169272926,169275035,169277744,169279371,169280349,169282872,169289025,169290844,169292252,169294147,169294599,169307280,169318761,169320776,169362320	169128830,169129084,169132681,169137493,169138706,169139371,169139610,169140545,169142793,169145923,169146959,169151026,169152964,169154603,169156405,169157502,169162600,169166054,169168676,169169818,169170667,169172134,169173224,169174164,169175389,169176588,169178026,169181618,169182319,169186019,169188265,169192033,169193892,169197030,169198911,169201870,169202959,169204271,169205637,169206188,169207250,169209641,169212207,169213870,169216430,169220563,169225453,169226588,169231842,169233588,169236068,169237287,169238302,169239775,169241365,169243072,169243522,169244932,169246986,169247515,169256236,169257249,169259217,169271107,169273067,169275238,169277951,169279595,169280519,169283001,169289145,169290997,169292369,169294261,169294710,169307397,169318884,169320884,169362534	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	33057836	33057856	33057851	+	RAMPAGE_only	18	18	55	1.765724	5.060262	chr2	33056524	33057991	LTR|ERV1|LTR12C	-	chr2	32947301	33399509	LTBP1|NM_206943.2	+	32947301,32948874,33020908,33110581,33134792,33186855,33188576,33217551,33222079,33243661,33252676,33257283,33259587,33262721,33263293,33273655,33274964,33275800,33280038,33293159,33300450,33301521,33309433,33315143,33342837,33347366,33360596,33361428,33363389,33364215,33365332,33389183,33397132,33398363	32947818,32948945,33021206,33110751,33134960,33187080,33188851,33217654,33222151,33243784,33252844,33257511,33259610,33262821,33263392,33273781,33275090,33275923,33280158,33293282,33300573,33301644,33309556,33315269,33342963,33347510,33360779,33361515,33363518,33364356,33365503,33389306,33397282,33399509	0.672727
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	283490	283507	283506	+	High_confidence	3	4	6	0.192624	2.584963	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	187072503	187072504	187072503	+	High_confidence	4	4	7	0.224729	2.584963	chr1	187072401	187072600	SINE|Alu|AluY	-	chr1	187072512	187480614	ERVMER61-1|ENST00000609113.2	+	187072512,187092824,187328990,187443627,187480289	187073024,187092946,187329060,187443726,187480614	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	57560388	57560394	57560388	+	RAMPAGE_only	5	5	9	0.288937	2.947703	chr3	57560303	57560625	SINE|Alu|AluSq2	-	chr3	57556276	57566844	PDE12|ENST00000311180.8	+	57556276,57559309,57559561	57557687,57559388,57566844	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	73080369	73080370	73080369	-	High_confidence	14	14	14	0.449457	3.521641	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.785714
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	75127183	75127262	75127183	-	RAMPAGE_only	34	34	92	2.953575	5.336329	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.826087
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	10589672	10589679	10589678	-	High_confidence	3	4	8	0.256833	2.807355	chrX	10589469	10589852	LTR|ERV1|HERVE_a-int	-	chrX	10445555	10589909	MID1|ENST00000380780.5	-	10445555,10454869,10459645,10469696,10474622,10482479,10495583,10523091,10566887,10589586	10449716,10455077,10459807,10469840,10474750,10482628,10495691,10523187,10567603,10589909	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	10681270	10681299	10681293	+	RAMPAGE_only	2	2	11	0.353145	3.121928	chr19	10681334	10681610	SINE|Alu|AluJb	+	chr19	10679184	10681556	ILF3|ENST00000589173.1	+	10679184,10679815,10681018,10681218	10679192,10679927,10681130,10681556	0.545455
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	42401858	42401890	42401889	+	RAMPAGE_only	9	9	74	2.375702	5.503174	chr13	42401890	42402079	SINE|MIR|MIR	+	chr13	42424891	42485956	LOC105370177|NR_135319.1	+	42424891,42435199,42437317,42485468	42424978,42435293,42437472,42485956	0.581081
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	29018764	29018778	29018764	+	RAMPAGE_only	3	4	9	0.288937	3.000000	chr8	29018661	29018776	LINE|CR1|L3	+	chr8	29046299	29050654	HMBOX1|ENST00000517386.1	+	29046299,29047357,29048953,29050201	29046416,29047453,29049048,29050654	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	67884856	67884867	67884866	+	RAMPAGE_only	11	11	18	0.577873	3.101881	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.833333
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	89589610	89589614	89589610	-	High_confidence	5	6	11	0.353145	3.459432	chr11	89589298	89589739	LTR|ERVL-MaLR|MLT1G3	+	chr11	89324352	89589611	NOX4|NM_001143837.1	-	89324352,89335844,89337446,89340062,89342073,89354961,89373431,89400016,89400214,89402325,89421901,89432783,89440687,89444134,89449439,89451784,89490457,89492120,89497996,89546636,89589439	89326876,89335945,89337515,89340171,89342193,89355043,89373492,89400079,89400379,89402542,89421982,89432856,89440715,89444232,89449524,89451895,89490553,89492219,89498187,89546695,89589611	0.545455
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	6918647	6918680	6918647	-	High_confidence	14	14	53	1.701516	5.402175	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6916850	6918663	RNF144A-AS1|ENST00000439208.1	-	6916850,6918280	6917224,6918663	0.943396
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	206052807	206052829	206052807	+	High_confidence	3	3	18	0.577873	4.058814	chr1	206052518	206053000	LTR|ERV1|LTR2B	+	chr1	206052844	206062257	BX571818.1|ENST00000582596.5	+	206052844,206060400,206061344,206061661	206053265,206060449,206061397,206062257	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	77169294	77169313	77169312	-	High_confidence	4	4	8	0.256833	2.807355	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77092201	77169319	PIGK|ENST00000487906.5	-	77092201,77122274,77154448,77161294,77161593,77163845,77169259	77092490,77122359,77154621,77161405,77161711,77163942,77169319	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	5608939	5608972	5608939	-	RAMPAGE_only	3	3	13	0.417353	3.418296	chr19	5608767	5609080	SINE|Alu|AluSx1	+	chr19	5598831	5616278	SAFB2|ENST00000591123.5	-	5598831,5600129,5604582,5604786,5609994,5610638,5612539,5613464,5616131	5598884,5600260,5604695,5604936,5610095,5610688,5612567,5613527,5616278	0.846154
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	102929989	102930020	102929989	+	High_confidence	6	6	32	1.027330	4.601410	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	133369927	133370018	133370016	-	RAMPAGE_only	8	15	45	1.444683	4.905692	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.977778
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	202565232	202565359	202565248	+	RAMPAGE_only	26	28	131	4.205634	5.102249	chr2	202565124	202565329	LINE|CR1|L3b	-	chr2	202377433	202567751	BMPR2|ENST00000374574.2	+	202377433,202464808,202467518,202513718,202514887,202518821,202520086,202530793,202532584,202542310,202552715,202559695	202377550,202464979,202467689,202513829,202514979,202519052,202520201,202530954,202532732,202542447,202552888,202567751	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	143558019	143558020	143558019	+	High_confidence	8	10	10	0.321041	2.721928	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143558688	143563059	GSDMD|ENST00000524846.5	+	143558688,143559776,143561741,143561958,143562447,143562661	143559552,143561423,143561828,143562350,143562521,143563059	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	90258074	90258080	90258074	+	RAMPAGE_only	4	4	8	0.256833	2.807355	chr14	90258077	90258330	SINE|MIR|MIRb	+	chr14	90256577	90272550	PSMC1|ENST00000543772.2	+	90256577,90259159,90263317,90263661,90264040,90265069,90268223,90269396,90270197,90272272	90256600,90259213,90263442,90263847,90264169,90265166,90268413,90269548,90270352,90272550	0.625000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	42287460	42287461	42287460	+	RAMPAGE_only	33	33	41	1.316267	4.615312	chr15	42287351	42287469	DNA|hAT-Blackjack|MER94	+	chr15	42276345	42327495	GANC|ENST00000567421.1	+	42276345,42278481,42287690,42292734,42297610,42306545,42308221,42310282,42310692,42321784,42326297,42327362	42276410,42278590,42287818,42292917,42297656,42306612,42308318,42310463,42310846,42322020,42326424,42327495	0.902439
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	29647350	29647361	29647360	+	High_confidence	13	13	26	0.834706	4.133661	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.653846
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	114285947	114285960	114285947	+	High_confidence	3	3	7	0.224729	2.584963	chr13	114285920	114286050	LINE|L1|L1ME1	-	chr13	114285974	114291718	UPF3A|ENST00000481131.5	+	114285974,114286518,114291488,114291633	114286400,114286629,114291544,114291718	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	25244001	25244209	25244078	-	High_confidence	18	18	126	4.045113	4.616269	chr1	25244059	25244116	SINE|Alu|Alu	-	chr1	25242248	25244105	RSRP1|ENST00000569495.5	-	25242248,25242538,25243549	25242426,25242705,25244105	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	42245340	42245356	42245355	+	High_confidence	3	3	12	0.385249	3.277613	chr2	42245085	42245395	SINE|Alu|AluSx	-	chr2	42245121	42330744	MSTRG.15806.9	+	42245121,42245504,42256500,42261120,42264705,42280849,42282822,42284633,42286268,42288226,42295124,42295380,42301240,42303103,42303314,42304483,42315961,42317426,42325466,42326153,42328885,42329733	42245414,42245687,42256630,42263306,42264731,42280973,42282972,42284703,42286379,42288322,42295259,42295516,42301392,42303229,42303446,42304551,42316050,42317524,42325554,42326252,42329016,42330744	0.916667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	217842161	217842201	217842167	-	High_confidence	10	10	50	1.605204	4.918296	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.860000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	103353930	103353957	103353956	+	High_confidence	9	11	19	0.609977	4.037401	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.842105
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	23939325	23939352	23939325	+	RAMPAGE_only	4	4	14	0.449457	2.719295	chr2	23939241	23939827	LTR|ERV1|MER92B	-	chr2	23927311	24000203	UBXN2A|ENST00000404924.5	+	23927311,23939539,23958300,23971275,23976968,23982895,23984672,23999671	23927615,23939662,23958355,23971414,23977075,23983033,23984831,24000203	0.785714
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	7913248	7913268	7913248	-	RAMPAGE_only	12	12	29	0.931018	4.356558	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.655172
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	158634514	158634515	158634514	+	High_confidence	7	7	7	0.224729	2.521641	chr3	158634523	158640540	LINE|L1|L1PA2	+	chr3	158634528	158665407	MSTRG.20439.1	+	158634528,158645628,158646164,158646742,158649040,158652095,158653309,158654546,158658921,158660873,158662627,158665336	158634609,158645781,158646297,158646947,158649157,158652246,158653467,158654631,158659059,158660975,158662684,158665407	0.857143
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	16023592	16023593	16023592	+	RAMPAGE_only	5	6	8	0.256833	2.500000	chr16	16023550	16023936	LINE|L2|L2b	-	chr16	16014539	16056561	ABCC1|ENST00000574224.1	+	16014539,16016495,16033108,16036471,16044449,16045835,16048141,16052723,16056091	16014628,16016621,16033170,16036603,16044680,16046013,16048303,16052816,16056561	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	67387206	67387246	67387225	-	RAMPAGE_only	7	7	20	0.642081	3.010571	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	5680213	5680264	5680213	-	High_confidence	4	4	20	0.642081	3.721928	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678831	5680194	C19orf70|ENST00000590389.5	-	5678831,5679344,5679585,5680054	5679230,5679396,5679763,5680194	0.650000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	74213768	74213842	74213768	-	High_confidence	6	6	40	1.284163	4.512815	chrX	74213589	74213937	LINE|L1|L1PB	+	chrX	74209975	74213660	Z83843.1|ENST00000604070.1	-	74209975	74213660	0.975000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	2726956	2726963	2726962	+	High_confidence	48	49	110	3.531448	5.499049	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.727273
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	60887015	60887094	60887083	+	High_confidence	5	6	35	1.123643	4.779094	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.828571
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	150640314	150640348	150640347	+	High_confidence	24	24	49	1.573100	5.194236	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.959184
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	102947726	102947748	102947726	-	RAMPAGE_only	5	5	14	0.449457	3.664498	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	121973179	121973226	121973179	+	RAMPAGE_only	28	51	139	4.462466	5.338664	chr5	121973115	121973399	LINE|L2|L2c	-	chr5	121961960	122028619	SRFBP1|ENST00000339397.4	+	121961960,121974195,121975314,121994598,122019259,122020087,122022369,122026941	121962068,121974284,121975387,121994670,122019341,122020802,122022407,122028619	0.906475
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	39025593	39025615	39025593	-	High_confidence	5	5	11	0.353145	2.921928	chr13	39025332	39025814	LTR|ERVL-MaLR|MLT1F	+	chr13	39022353	39026472	PROSER1|ENST00000496138.2	-	39022353,39023051,39024472,39026276	39022412,39023130,39024556,39026472	0.545455
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	133296920	133296921	133296920	+	RAMPAGE_only	18	18	27	0.866810	4.213661	chr7	133296821	133296980	DNA|hAT-Charlie|MER5B	+	chr7	133253094	133481078	EXOC4|ENST00000462055.5	+	133253094,133274981,133288921,133305876,133317283,133356329,133374827,133475327,133480049	133253187,133275171,133289116,133306061,133317390,133356573,133375002,133475473,133481078	0.925926
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	46374832	46374833	46374832	-	RAMPAGE_only	11	11	14	0.449457	3.664498	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46371940	46378645	RUBCNL|ENST00000439642.1	-	46371940,46377889,46378446	46372597,46378005,46378645	0.928571
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	86385715	86385768	86385767	-	High_confidence	3	3	11	0.353145	2.845351	chr1	86385755	86385950	DNA|TcMar-Tc2|Kanga1b	+	chr1	86381941	86385544	ODF2L|ENST00000480440.5	-	86381941,86382930,86383133,86384675,86385457	86382358,86383002,86383196,86384801,86385544	0.636364
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73837439	73837474	73837450	-	RAMPAGE_only	51	56	184	5.907150	4.088671	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.989130
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100834707	100834708	100834707	+	High_confidence	11	12	16	0.513665	3.323231	chr14	100834648	100834738	LINE|L2|L2b	+	chr14	100833763	100861021	MEG3|ENST00000524035.5	+	100833763,100836166,100845457,100860690	100836075,100836300,100845533,100861021	0.937500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	74174548	74174572	74174571	+	High_confidence	76	96	299	9.599118	5.632579	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	0.986622
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	75786793	75786802	75786795	+	RAMPAGE_only	13	16	28	0.898914	3.508536	chr4	75786753	75786977	LINE|L2|L2c	-	chr4	75724597	75814286	USO1|ENST00000264904.8	+	75724597,75752372,75752539,75757496,75760593,75770438,75770821,75771081,75774675,75782679,75787061,75790149,75790642,75793689,75795335,75799621,75800350,75800617,75801078,75804133,75805139,75806485,75808952,75810431,75812159,75813205	75724885,75752459,75752604,75757573,75760605,75770539,75770924,75771137,75774796,75782858,75787202,75790238,75790797,75793901,75795356,75799732,75800469,75800799,75801200,75804272,75805303,75806572,75809051,75810539,75812375,75814286	0.964286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	74969683	74969715	74969714	+	RAMPAGE_only	5	5	12	0.385249	3.418296	chr10	74969693	74969726	LINE|L2|L2a	-	chr10	74842619	75022125	KAT6B|ENST00000648369.1	+	74842619,74959969,74969659,74970019,74972506,74975398,74977315,74979223,74981786,74985079,75020581,75021125,75021880	74843478,74960078,74969775,74970101,74972639,74976330,74977437,74979339,74981928,74985241,75020813,75021285,75022125	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	15829094	15829095	15829094	+	High_confidence	41	44	46	1.476787	4.860238	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	0.891304
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	31959160	31959179	31959178	+	High_confidence	6	6	14	0.449457	2.777363	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31981060	KIAA1551|ENST00000540924.5	+	31959407,31960776,31980877	31959491,31960871,31981060	0.642857
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	62248776	62248830	62248776	-	High_confidence	2	2	15	0.481561	3.773557	chr15	62248621	62248748	SINE|MIR|MIR3	-	chr15	62245706	62248795	AC126323.1|ENST00000570077.1	-	62245706,62247028,62247305,62248396,62248767	62246655,62247112,62247413,62248538,62248795	0.866667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	170226586	170226588	170226587	+	High_confidence	53	62	83	2.664638	5.700548	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.578313
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	72255705	72255747	72255705	-	RAMPAGE_only	3	3	10	0.321041	3.121928	chr12	72255193	72255834	LTR|ERVL|MER70B	-	chr12	72253507	72258240	TRHDE-AS1|ENST00000549957.1	-	72253507	72258240	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	43704037	43704050	43704039	+	RAMPAGE_only	4	6	11	0.353145	2.663533	chr2	43704069	43704379	LINE|L1|L1MB2	+	chr2	43637338	43765482	MSTRG.15821.4	+	43637338,43644670,43678862,43692513,43694430,43695142,43697170,43699646,43703980,43706321,43707400,43709989,43710219,43710488,43720668,43726271,43729636,43731489,43738340,43740945,43742740,43743833,43745865,43753618,43757118,43758899,43762303,43764227,43765412	43637379,43644796,43678925,43692663,43694514,43695224,43697356,43700608,43704056,43706416,43707545,43710126,43710330,43712383,43720749,43726451,43729745,43731602,43738520,43741043,43742918,43743989,43745963,43753760,43757264,43759029,43762390,43764365,43765482	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	75590514	75590515	75590514	+	RAMPAGE_only	12	13	15	0.481561	3.323231	chr17	75590498	75590621	SINE|MIR|MIRc	-	chr17	75588057	75616381	MSTRG.13089.1	+	75588057,75589620,75591976,75592237,75592463,75592678,75594474,75594700,75594839,75596767,75601437,75602829,75603031,75603187,75605503,75605863,75610165,75610899,75611600,75611885,75612797,75612973,75613292,75613704,75614198,75614582,75614772,75614960,75615239,75615502,75615692,75616068,75616311	75589424,75591712,75592080,75592301,75592541,75592840,75594588,75594759,75596555,75596899,75602594,75602945,75603077,75603312,75605621,75606021,75610259,75610959,75611658,75612016,75612893,75613209,75613471,75613777,75614360,75614683,75614849,75615042,75615338,75615600,75615884,75616147,75616381	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	64087849	64087850	64087849	+	RAMPAGE_only	5	6	7	0.224729	2.807355	chr14	64087899	64088180	SINE|Alu|AluSz	+	chr14	64075614	64226430	SYNE2|ENST00000394768.6	+	64075614,64078465,64080455,64081442,64087418,64087670,64089573,64090865,64093348,64097948,64098746,64101931,64107490,64113340,64119426,64120926,64122011,64122285,64125078,64126326,64126597,64128451,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64165284,64167232,64167494,64168876,64170227,64174943,64177357,64186423,64188549,64190070,64202800,64208757,64209427,64209941,64211960,64212810,64214193,64216247,64218397,64219207,64220436,64221575,64223188,64224460,64224995,64225318	64076100,64078606,64080638,64081580,64087487,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64122427,64125210,64126479,64126807,64128553,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64165410,64167387,64167639,64168971,64170462,64175138,64177483,64186579,64188708,64190237,64202963,64208945,64209578,64210124,64212098,64213005,64214470,64216387,64218512,64219410,64220637,64221704,64223380,64224547,64225045,64226430	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	39263069	39263081	39263069	-	RAMPAGE_only	3	3	8	0.256833	2.750000	chr13	39262810	39263196	LTR|ERVL|LTR79	-	chr13	39209115	39603226	LHFPL6|ENST00000648377.1	-	39209115,39215963,39219334,39219820,39220084,39227828,39256989,39304370,39306340,39309805,39343853,39378427,39600831,39602882	39210104,39216491,39219505,39219866,39220138,39227912,39257081,39304510,39306362,39309861,39344054,39378526,39601390,39603226	0.750000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	143713290	143713300	143713290	-	RAMPAGE_only	8	8	13	0.417353	3.584963	chr2	143713103	143713461	LTR|ERVL-MaLR|THE1A	-	chr2	143676164	143741294	AC092652.2|ENST00000552220.1	-	143676164,143741089	143676581,143741294	0.692308
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	123060168	123060256	123060168	-	High_confidence	60	63	425	13.644232	5.518251	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.656471
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	238486001	238486043	238486008	-	High_confidence	19	19	154	4.944028	5.920595	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480383	238486017	LINC01139|NR_015407.1	-	238480383,238485784	238481681,238486017	0.818182
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	64990587	64990643	64990587	-	High_confidence	3	3	23	0.738394	3.845351	chr7	64990323	64990915	LTR|ERV1|LTR4	-	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.913043
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	215914782	215914805	215914804	-	RAMPAGE_only	4	4	9	0.288937	3.169925	chr1	215914769	215914831	LINE|L2|L2a	+	chr1	215622893	216423396	USH2A|NM_206933.2	-	215622893,215628813,215634458,215639154,215640557,215647521,215648527,215650591,215670971,215674099,215680148,215728029,215741374,215743176,215758594,215759659,215766680,215779842,215782041,215782737,215786669,215790058,215798906,215813735,215816996,215837990,215844293,215845823,215867006,215877757,215878763,215888425,215900074,215900754,215934615,215965316,215970624,215993019,215998886,216000402,216046430,216048533,216070100,216072888,216073096,216078088,216083455,216084697,216086718,216089012,216097082,216175251,216190222,216196552,216198314,216199626,216207272,216217386,216231952,216246584,216250902,216289279,216292174,216321882,216323473,216324167,216325304,216327590,216364952,216418513,216421851,216423213	215625870,215629035,215634703,215639238,215640734,215647730,215648766,215650801,215671293,215675616,215680376,215728384,215741537,215743335,215758752,215759843,215766788,215780041,215782196,215782935,215786874,215790282,215799125,215813904,215817195,215838103,215844496,215846033,215867170,215877880,215879098,215889054,215900217,215900905,215934795,215965479,215970776,215993167,215999058,216000562,216046592,216048647,216070292,216072969,216073300,216078362,216083586,216084877,216086820,216089139,216097213,216175482,216190367,216196722,216198584,216200121,216207431,216217550,216232136,216247226,216251098,216289410,216292370,216321976,216323695,216324352,216325599,216327654,216365085,216418679,216422540,216423396	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	130548833	130548887	130548886	-	RAMPAGE_only	8	8	41	1.316267	4.509872	chr7	130548620	130548929	SINE|Alu|AluY	+	chr7	130506523	130564511	COPG2|ENST00000617523.1	-	130506523,130507273,130507684,130508568,130547673,130548402,130549313,130550523,130551240,130552354,130554480,130555036,130561032,130563268,130564259	130506806,130507372,130507823,130508659,130547845,130548542,130549376,130550649,130551344,130552430,130554724,130555132,130561221,130563336,130564511	0.951220
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	39387780	39387781	39387780	+	High_confidence	13	14	18	0.577873	3.086049	chr3	39387553	39387832	LINE|L2|L2	-	chr3	39387807	39391510	SLC25A38|ENST00000642978.1	+	39387807,39389361,39389494,39390422,39391440	39387865,39389389,39389616,39390507,39391510	0.666667
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	42809425	42809443	42809425	+	High_confidence	2	2	13	0.417353	3.022055	chr3	42809252	42809581	LTR|ERV1|MER39	-	chr3	42809491	42864876	ACKR2|ENST00000497921.2	+	42809491,42819630,42839093,42864465	42809532,42819711,42839279,42864876	0.538462
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	23709130	23709169	23709168	-	RAMPAGE_only	3	3	8	0.256833	2.750000	chr22	23708980	23709629	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	125337374	125337392	125337374	+	RAMPAGE_only	2	3	6	0.192624	2.584963	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125302306	125342234	GAPVD1|ENST00000436712.2	+	125302306,125305062,125307412,125307690,125309928,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176,125342218	125302826,125305149,125307547,125307880,125310009,125312612,125321499,125323923,125326589,125330218,125332060,125332629,125337095,125337591,125341264,125342234	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	35515840	35515867	35515851	-	RAMPAGE_only	3	3	13	0.417353	3.584963	chr15	35515747	35515896	SINE|Alu|AluJr	+	chr15	35370881	35546168	DPH6|ENST00000256538.8	-	35370881,35373520,35381821,35410834,35450684,35454746,35538273,35542412,35546118	35372203,35373608,35381916,35410896,35450803,35454820,35538467,35542507,35546168	0.615385
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	20658321	20658349	20658348	+	High_confidence	30	61	156	5.008236	4.976553	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658326	20995948	MSTRG.27900.3	+	20658326,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	0.628205
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	35713469	35713490	35713469	-	High_confidence	2	2	12	0.385249	3.251629	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	45842725	45842758	45842735	+	RAMPAGE_only	3	3	13	0.417353	3.022055	chr22	45842714	45842769	LINE|L2|L2c	-	chr22	45793595	45843797	ATXN10|ENST00000402380.3	+	45793595,45806958,45842990,45843668	45793778,45807022,45843178,45843797	0.769231
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	19243362	19243363	19243362	+	RAMPAGE_only	9	9	9	0.288937	2.641604	chr12	19243242	19243414	SINE|MIR|MIRb	+	chr12	19130059	19243990	MSTRG.5995.6	+	19130059,19132392,19240463	19130130,19132450,19243990	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	89656050	89656069	89656050	-	RAMPAGE_only	2	2	11	0.353145	3.321928	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642774	89819718	MSTRG.24400.2	-	89642774,89643942,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89706058,89707360,89708495,89710680,89712035,89712574,89713147,89714542,89715652,89716649,89718365,89718766,89719135,89722954,89723511,89725198,89727832,89728930,89730725,89732556,89738325,89740233,89743149,89743575,89745272,89745491,89747328,89749222,89749542,89750353,89751430,89753511,89754082,89756276,89758254,89758815,89761644,89762318,89771560,89772572,89774620,89776599,89780211,89781398,89785011,89787853,89789779,89790158,89793761,89794099,89794576,89803327,89819505	89643212,89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89706192,89707476,89708628,89710794,89712256,89712786,89713296,89714751,89715769,89716809,89718627,89719030,89719225,89723143,89723619,89725396,89727955,89729139,89730923,89732775,89738455,89740378,89743280,89743714,89745411,89745626,89747470,89749369,89749751,89750532,89751582,89753622,89754230,89756390,89758351,89758960,89761748,89762530,89771621,89772721,89774733,89776695,89780293,89781592,89785126,89787957,89789911,89790401,89793954,89794207,89794801,89803554,89819718	0.818182
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	93455158	93455215	93455182	+	RAMPAGE_only	46	46	212	6.806064	4.681738	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.910377
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	96126030	96126031	96126030	-	RAMPAGE_only	5	5	7	0.224729	2.584963	chr15	96125874	96126062	LTR|Gypsy|LTR81A	-	chr15	96097463	96159649	MSTRG.10111.1	-	96097463,96102183,96104057,96118842,96121830,96125984,96127161	96101582,96102223,96110392,96118976,96121971,96126115,96159649	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	33838256	33838264	33838256	+	RAMPAGE_only	19	19	32	1.027330	4.437500	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.812500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	40954674	40954722	40954700	+	High_confidence	9	9	32	1.027330	4.625000	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954710	41141048	LOC644919|NR_109758.1	+	40954710,40962789,40974339,41140833	40954952,40962842,40974390,41141048	0.500000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	14181568	14181608	14181568	+	RAMPAGE_only	6	6	22	0.706290	3.658993	chr3	14181325	14181571	SINE|MIR|MIR	-	chr3	14178727	14198369	LSM3|NM_014463.2	+	14178727,14181559,14183936,14198035	14178881,14181670,14184032,14198369	0.954545
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	41285324	41285335	41285324	+	RAMPAGE_only	2	2	7	0.224729	2.521641	chr15	41285320	41285686	LTR|ERV1|LTR7	-	chr15	41284004	41306534	OIP5-AS1|ENST00000500949.6	+	41284004,41285224,41286010,41298040	41284110,41285363,41286100,41306534	0.714286
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	14816798	14816852	14816825	-	RAMPAGE_only	7	8	38	1.219955	4.628108	chr9	14816817	14816981	SINE|MIR|MIR	+	chr9	14775934	14874363	MSTRG.27854.13	-	14775934,14784369,14788918,14792742,14797497,14801651,14804955,14806660,14807939,14812811,14816777,14819233,14823159,14824024,14824795,14841446,14842315,14851283,14857552,14859182,14863808,14868743	14776253,14784634,14789114,14792884,14797642,14801874,14805152,14806846,14808134,14813064,14816871,14819442,14823327,14824115,14824992,14841589,14848773,14851607,14857749,14859484,14863903,14874363	0.842105
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	113773650	113773686	113773685	-	High_confidence	8	8	26	0.834706	4.392747	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113744576	113773683	LINC01234|NR_110026.1	-	113744576,113767074,113773614	113746595,113767208,113773683	0.807692
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	93339157	93339199	93339198	-	RAMPAGE_only	5	6	16	0.513665	3.773557	chr1	93339000	93339318	LINE|L2|L2b	+	chr1	93264676	93345783	MSTRG.1364.14	-	93264676,93305387,93309539,93324634,93325768,93337376,93338229,93339356,93339648,93340457,93345723	93264772,93305470,93309790,93324729,93325895,93337512,93339274,93339536,93339679,93340510,93345783	0.937500
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	212421497	212421510	212421497	+	RAMPAGE_only	3	3	8	0.256833	2.750000	chr1	212421055	212421571	LTR|ERV1|MER41D	+	chr1	212432886	212446379	NENF|NR_026598.1	+	212432886,212444338,212445829	212433120,212444442,212446379	0.875000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	110330027	110330048	110330027	-	RAMPAGE_only	2	2	10	0.321041	3.169925	chr6	110329832	110331376	LINE|L1|L1MD2	+	chr6	110245927	110358272	METTL24|ENST00000338882.4	-	110245927,110298921,110315341,110322773,110357954	110246260,110299150,110315481,110322872,110358272	0.700000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	20764671	20764686	20764685	+	High_confidence	5	5	14	0.449457	3.546594	chr16	20764437	20764730	SINE|Alu|AluSx1	+	chr16	20764682	20777417	ACSM3|ENST00000561795.5	+	20764682,20769983,20775838,20777372	20764736,20770253,20776049,20777417	0.642857
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	24178749	24178769	24178749	-	RAMPAGE_only	4	4	11	0.353145	3.277613	chr6	24178737	24178959	SINE|MIR|MIRb	-	chr6	24171755	24205303	DCDC2|ENST00000378450.6	-	24171755,24178329,24205001	24174834,24178632,24205303	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	150118767	150118829	150118776	-	RAMPAGE_only	4	4	22	0.706290	3.884184	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113841	150155627	MSTRG.23220.3	-	150113841,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150152712	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155627	0.909091
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	109546070	109546085	109546070	-	RAMPAGE_only	2	2	9	0.288937	2.750000	chr2	109545815	109546035	LINE|L2|L2a	-	chr2	109542796	109613657	SEPT10|NM_001321515.1	-	109542796,109546049,109553086,109564365,109565762,109567814,109574580,109585125,109585720,109613111	109544324,109546237,109553219,109564534,109565859,109567976,109574767,109585321,109585838,109613657	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	80148048	80148049	80148048	+	High_confidence	96	96	101	3.242512	5.967419	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.574257
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	131121829	131122112	131122023	+	RAMPAGE_only	21	22	255	8.186539	5.644835	chr9	131121938	131122086	LINE|L2|L2c	-	chr9	131096555	131123145	MSTRG.28730.6	+	131096555,131111596,131114576,131117755,131120234	131096863,131111663,131114618,131117918,131123145	0.976471
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	67231011	67231054	67231048	-	RAMPAGE_only	18	21	84	2.696742	4.381104	chr10	67230665	67236674	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.904762
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	27613249	27613260	27613249	+	High_confidence	4	4	13	0.417353	3.251629	chr14	27612881	27613894	LTR|ERV1|MER4B-int	+	chr14	27612610	27639636	LINC00645|ENST00000557399.1	+	27612610,27613420,27619822,27634243,27636419	27612677,27613496,27619873,27634344,27639636	0.846154
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	42284293	42284335	42284293	+	RAMPAGE_only	3	3	13	0.417353	2.873141	chr2	42284226	42284378	LINE|L1|L1ME4c	+	chr2	42282908	42289913	EML4|ENST00000480320.1	+	42282908,42284633,42286268,42288226	42282972,42284703,42286379,42289913	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	177311002	177311019	177311002	-	RAMPAGE_only	1	1	7	0.224729	2.584963	chr2	177310880	177311218	LTR|ERVL-MaLR|THE1D	-	chr2	177232498	177287777	NFE2L2|ENST00000588123.1	-	177232498,177233249,177234004,177283599,177287610	177232583,177233339,177234271,177283804,177287777	0.571429
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	155679929	155679930	155679929	-	High_confidence	8	9	9	0.288937	2.500000	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	0.888889
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	25739322	25739360	25739322	-	RAMPAGE_only	1	1	9	0.288937	3.000000	chr18	25739291	25739801	DNA|hAT-Ac|OldhAT1	+	chr18	25061923	25352250	ZNF521|NM_015461.2	-	25061923,25089464,25091949,25195159,25224344,25322007,25350906,25352004	25062741,25089580,25092081,25195244,25227697,25322187,25350947,25352250	0.555556
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	45823809	45823837	45823822	-	High_confidence	3	4	10	0.321041	2.721928	chr19	45823777	45823871	LINE|RTE-BovB|MamRTE1	-	chr19	45816482	45824012	SYMPK|ENST00000598329.2	-	45816482,45816797,45817958,45821383,45822755,45823371,45823766	45816577,45816974,45818146,45821485,45822846,45823472,45824012	0.800000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	643625	643648	643627	-	High_confidence	6	10	16	0.513665	2.827820	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	1.000000
metanephros_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	41653665	41653689	41653674	+	RAMPAGE_only	3	3	10	0.321041	3.321928	chr22	41653710	41653849	DNA|hAT-Charlie|MER5A	+	chr22	41656952	41661699	XRCC6|ENST00000478914.1	+	41656952,41658251,41661330	41657032,41658352,41661699	0.800000
myometrial_cell_female_adult_34_years	chr19	48868595	48868631	48868595	-	High_confidence	1083	1119	5087	188.875286	7.510057	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.993120
myometrial_cell_female_adult_34_years	chr14	100929920	100929921	100929920	+	High_confidence	12	14	14	0.519806	3.521641	chr14	100929864	100929989	LINE|L1|L1ME5	+	chr14	100929920	100998443	MSTRG.9383.63	+	100929920,100935771,100938879,100940364,100942761,100944808,100947033,100948977,100949514,100950401,100951431,100953963,100954921,100955884,100958261,100960060,100961026,100963964,100964352,100966644,100967638,100968647,100969458,100972261,100974125,100975410,100980576,100982503,100983460,100984347,100985654,100986618,100987543,100988708,100989693,100991490,100993834,100996885,100997486,100998024	100930509,100937488,100938956,100940450,100942838,100944872,100947116,100949039,100949596,100950472,100951494,100954046,100955006,100955949,100958343,100960219,100961132,100964000,100964439,100966731,100967786,100968724,100969545,100972346,100974203,100975496,100980663,100982585,100983542,100984434,100985740,100986706,100987630,100988790,100989780,100991565,100993907,100996916,100997546,100998443	0.928571
myometrial_cell_female_adult_34_years	chr10	93431448	93431449	93431448	-	RAMPAGE_only	11	11	12	0.445548	3.095795	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.916667
myometrial_cell_female_adult_34_years	chr22	50756861	50756882	50756881	+	High_confidence	4	4	8	0.297032	3.000000	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.875000
myometrial_cell_female_adult_34_years	chrX	115647972	115648013	115648012	+	RAMPAGE_only	3	3	13	0.482677	3.188722	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.923077
myometrial_cell_female_adult_34_years	chr4	86453308	86453325	86453308	-	High_confidence	11	11	29	1.076741	4.280226	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453325	MAPK10|ENST00000641313.1	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86354644,86453325	0.862069
myometrial_cell_female_adult_34_years	chr19	45524114	45524140	45524130	+	RAMPAGE_only	19	20	38	1.410902	4.385957	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.736842
myometrial_cell_female_adult_34_years	chr4	173369507	173369534	173369533	-	High_confidence	19	20	70	2.599031	4.655590	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.514286
myometrial_cell_female_adult_34_years	chr17	41871730	41871833	41871799	-	RAMPAGE_only	12	12	133	4.938159	5.805509	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.518797
myometrial_cell_female_adult_34_years	chr14	61578429	61578441	61578429	-	RAMPAGE_only	2	2	11	0.408419	2.521928	chr14	61578305	61578545	LINE|L1|L1MC4	-	chr14	61556271	61570653	LOC101927780|NR_110416.1	-	61556271,61560742,61565319,61569543,61570485	61556552,61565241,61565388,61569677,61570653	0.818182
myometrial_cell_female_adult_34_years	chr19	12800944	12800954	12800953	-	High_confidence	14	14	32	1.188128	4.215061	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.937500
myometrial_cell_female_adult_34_years	chr12	121950273	121950292	121950291	+	High_confidence	38	38	56	2.079225	5.094552	chr12	121949929	121950482	LINE|L1|L1MB5	+	chr12	121950292	121959739	MSTRG.7570.19	+	121950292,121951479,121954119,121957073,121958271,121958942	121950336,121951530,121954334,121957268,121958522,121959739	0.982143
myometrial_cell_female_adult_34_years	chr15	30624357	30624368	30624364	+	High_confidence	9	14	35	1.299515	3.930021	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.685714
myometrial_cell_female_adult_34_years	chr12	105332511	105332634	105332515	+	RAMPAGE_only	100	108	613	22.760085	6.704826	chr12	105332447	105332765	SINE|Alu|AluSq2	+	chr12	105330867	105370680	C12orf75|ENST00000549934.2	+	105330867,105348601,105365806,105366616,105367476,105370633	105330937,105348626,105365842,105366696,105367509,105370680	0.796085
myometrial_cell_female_adult_34_years	chr1	222064772	222064773	222064772	-	High_confidence	11	11	11	0.408419	2.913977	chr1	222064600	222064953	LTR|ERVL-MaLR|THE1B	-	chr1	222041704	222064763	LINC01705|ENST00000438158.1	-	222041704,222058413,222064684	222041922,222058678,222064763	0.727273
myometrial_cell_female_adult_34_years	chr2	231072254	231072255	231072254	+	RAMPAGE_only	5	5	8	0.297032	2.750000	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	1.000000
myometrial_cell_female_adult_34_years	chr3	124227569	124227603	124227569	+	High_confidence	9	9	27	1.002483	3.946223	chr3	124227536	124227648	LINE|L2|L2a	-	chr3	124227989	124721189	KALRN|ENST00000354186.8	+	124227989,124234828,124264497,124268742,124298790,124325979,124329860,124334264,124347142,124384844,124395134,124398696,124413469,124422811,124430655,124434333,124438887,124441944,124446160,124446762,124455176,124456609,124461889,124462523,124474662,124477244,124482807,124488203,124490693,124491322,124492739,124496310,124562842,124632419,124633848,124637207,124650807,124655600,124657447,124657733,124658430,124659364,124660922,124661850,124666448,124667011,124671659,124674360,124678189,124679457,124693803,124694331,124696133,124697592,124699868,124702037,124712934,124717246,124718924	124228064,124234943,124264690,124269255,124298913,124326171,124329992,124334495,124347265,124385036,124395343,124398871,124413665,124422978,124430775,124434525,124439037,124442059,124446276,124446885,124455359,124456728,124461956,124462633,124474732,124477334,124482900,124488315,124490884,124491424,124492882,124496413,124563089,124632703,124633953,124637303,124650938,124655667,124657551,124657803,124658517,124659457,124660973,124661928,124666634,124667183,124671898,124674614,124678313,124679517,124693831,124694503,124696255,124697724,124700033,124702116,124713135,124717385,124721189	0.888889
myometrial_cell_female_adult_34_years	chr4	141332616	141332617	141332616	-	High_confidence	386	386	391	14.517444	4.730502	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.976982
myometrial_cell_female_adult_34_years	chr8	53523963	53523964	53523963	-	High_confidence	9	9	13	0.482677	3.251629	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.923077
myometrial_cell_female_adult_34_years	chr9	73080369	73080370	73080369	-	High_confidence	9	9	9	0.334161	2.725481	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.777778
myometrial_cell_female_adult_34_years	chr2	174118081	174118196	174118084	-	RAMPAGE_only	45	63	321	11.918413	5.734274	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075408	174124315	OLA1|ENST00000392560.6	-	174075408,174078967,174081151,174081923,174123179,174123594,174124263	174075527,174079090,174081248,174082064,174123277,174123675,174124315	0.542056
myometrial_cell_female_adult_34_years	chr14	65336347	65336395	65336361	+	RAMPAGE_only	11	12	43	1.596548	5.113650	chr14	65336103	65336855	LINE|L2|L2a	-	chr14	65410591	65744121	FUT8|ENST00000360689.9	+	65410591,65455620,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65411993,65455718,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65744121	0.767442
myometrial_cell_female_adult_34_years	chr3	169812903	169812904	169812903	-	High_confidence	47	47	53	1.967838	4.254723	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.943396
myometrial_cell_female_adult_34_years	chr14	77736978	77736988	77736987	-	High_confidence	5	5	9	0.334161	2.947703	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	1.000000
myometrial_cell_female_adult_34_years	chr7	28095922	28095923	28095922	-	RAMPAGE_only	6	6	9	0.334161	2.750000	chr7	28095752	28096093	LTR|ERVL-MaLR|MLT1A	-	chr7	27832912	28071684	JAZF1|ENST00000430432.5	-	27832912,27840697,27895219,27991908,28071617	27832976,27840867,27895416,27991981,28071684	0.555556
myometrial_cell_female_adult_34_years	chr7	99272909	99272928	99272909	+	High_confidence	2	3	7	0.259903	2.584963	chr7	99272913	99272966	LINE|L2|L2b	+	chr7	99273300	99297972	MYH16|NR_002147.2	+	99273300,99277538,99279509,99280875,99283564,99283872,99284844,99285381,99287891,99289286,99291322,99292311,99294017,99296700,99297659,99297891	99273423,99277712,99279737,99280980,99283651,99284018,99284935,99285438,99288137,99289404,99291450,99292508,99294150,99296917,99297796,99297972	0.714286
myometrial_cell_female_adult_34_years	chr5	157479311	157479361	157479311	-	RAMPAGE_only	6	6	21	0.779709	3.713048	chr5	157479275	157479356	LINE|L2|L2b	-	chr5	157477303	157575741	MSTRG.24515.2	-	157477303,157478510,157481790,157488264,157489101,157490309,157491614,157491834,157492972,157494686,157496893,157499572,157502802,157505668,157507055,157509300,157513433,157518822,157519838,157530806,157537912,157564372,157570894,157575602	157478399,157481002,157481943,157488489,157489186,157490454,157491723,157491912,157493177,157494795,157497089,157499662,157502980,157505808,157507140,157509467,157513505,157518888,157520031,157530883,157537991,157564443,157570980,157575741	1.000000
myometrial_cell_female_adult_34_years	chr19	45424375	45424385	45424375	-	High_confidence	4	4	15	0.556935	3.323231	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	1.000000
myometrial_cell_female_adult_34_years	chr12	12927638	12927646	12927642	+	High_confidence	2	3	8	0.297032	2.807355	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927725	12980307	GPRC5D-AS1|ENST00000545914.5	+	12927725,12978940,12979523,12979999	12927803,12979021,12979622,12980307	0.500000
myometrial_cell_female_adult_34_years	chr4	89493192	89493193	89493192	+	RAMPAGE_only	5	5	8	0.297032	2.500000	chr4	89493041	89493615	LTR|ERV1|MER41C	-	chr4	89627783	89720172	AC097478.1|ENST00000507916.6	+	89627783,89691284,89719825	89627917,89691405,89720172	0.750000
myometrial_cell_female_adult_34_years	chr2	227534913	227534917	227534916	+	RAMPAGE_only	4	4	8	0.297032	2.750000	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	1.000000
myometrial_cell_female_adult_34_years	chr4	2838253	2838268	2838255	+	RAMPAGE_only	3	5	14	0.519806	3.700440	chr4	2838108	2838543	LINE|L1|L1ME3B	-	chr4	2843856	2930076	ADD1|NM_176801.2	+	2843856,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763,2907742,2908514,2914883,2926013,2926641,2928170	2844024,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905108,2907844,2908604,2915040,2926112,2926675,2930076	0.928571
myometrial_cell_female_adult_34_years	chr2	181954442	181954492	181954472	+	High_confidence	6	6	34	1.262386	3.981297	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.764706
myometrial_cell_female_adult_34_years	chr14	50756673	50756693	50756673	-	RAMPAGE_only	4	4	9	0.334161	2.947703	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
myometrial_cell_female_adult_34_years	chr17	42403476	42403799	42403636	-	RAMPAGE_only	5	5	107	3.972804	6.158621	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	1.000000
myometrial_cell_female_adult_34_years	chr1	202551728	202551737	202551728	+	RAMPAGE_only	3	3	7	0.259903	2.584963	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.571429
myometrial_cell_female_adult_34_years	chr14	73463610	73463634	73463624	-	High_confidence	118	120	443	16.448153	6.719523	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73460934	73463618	AC005280.2|ENST00000557577.1	-	73460934,73462528,73463474	73461264,73462689,73463618	0.598194
myometrial_cell_female_adult_34_years	chr10	110496220	110496258	110496257	-	High_confidence	10	10	49	1.819322	4.474330	chr10	110496171	110496447	LINE|L2|L2b	+	chr10	110475103	110496204	AL355512.1|ENST00000607952.1	-	110475103,110496118	110475226,110496204	0.693878
myometrial_cell_female_adult_34_years	chr10	74138912	74138913	74138912	-	RAMPAGE_only	4	4	6	0.222774	2.584963	chr10	74138649	74138959	SINE|Alu|AluJo	+	chr10	74120256	74150791	AP3M1|NM_001320264.1	-	74120256,74124379,74126147,74129107,74129906,74134026,74136631,74138106,74150334	74123910,74124524,74126355,74129241,74129992,74134164,74136803,74138382,74150791	1.000000
myometrial_cell_female_adult_34_years	chr1	161750421	161750438	161750421	+	High_confidence	4	4	9	0.334161	2.500000	chr1	161750400	161750488	LINE|L2|L2c	-	chr1	161749779	161757162	MSTRG.2294.3	+	161749779,161751654,161751865,161752367,161753074,161756785	161750145,161751781,161751984,161752464,161753261,161757162	0.888889
myometrial_cell_female_adult_34_years	chr12	57532062	57532095	57532094	-	RAMPAGE_only	3	3	7	0.259903	2.807355	chr12	57531960	57532134	LINE|RTE-BovB|MamRTE1	+	chr12	57530310	57547141	DCTN2|ENST00000434715.7	-	57530310,57532014,57532212,57532571,57532732,57532983,57533237,57533952,57534291,57535055,57535483,57535748,57538518,57541363,57546027,57547027	57530775,57532106,57532315,57532643,57532810,57533022,57533303,57534097,57534452,57535154,57535545,57535845,57538524,57541372,57546096,57547141	0.714286
myometrial_cell_female_adult_34_years	chr2	96303177	96303200	96303177	-	RAMPAGE_only	20	21	35	1.299515	4.173034	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.942857
myometrial_cell_female_adult_34_years	chr11	72111484	72111497	72111484	-	High_confidence	5	6	12	0.445548	3.188722	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	1.000000
myometrial_cell_female_adult_34_years	chr4	128570477	128570483	128570477	-	High_confidence	2	2	8	0.297032	2.521641	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.875000
myometrial_cell_female_adult_34_years	chr3	58526760	58526766	58526760	-	High_confidence	7	7	15	0.556935	3.039149	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	0.933333
myometrial_cell_female_adult_34_years	chr11	58578102	58578133	58578102	-	High_confidence	15	16	46	1.707935	4.905975	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.695652
myometrial_cell_female_adult_34_years	chr4	88533222	88533223	88533222	-	RAMPAGE_only	4	4	6	0.222774	2.584963	chr4	88532886	88533429	LTR|ERVL|MLT2A2	-	chr4	88520984	88523813	PYURF|ENST00000273968.4	-	88520984,88523497	88522029,88523813	1.000000
myometrial_cell_female_adult_34_years	chr7	116327892	116327914	116327911	-	RAMPAGE_only	59	65	215	7.982738	7.118318	chr7	116327809	116328061	SINE|MIR|MIRb	-	chr7	116275605	116286727	LOC102724434|NR_130922.1	-	116275605,116284367,116286111,116286698	116277432,116284406,116286195,116286727	0.511628
myometrial_cell_female_adult_34_years	chr5	149641044	149641095	149641044	-	High_confidence	7	7	31	1.150999	4.502583	chr5	149640933	149641176	SINE|MIR|MIRb	+	chr5	149637409	149641465	MSTRG.24439.1	-	149637409,149638295,149640998,149641271	149638234,149638707,149641148,149641465	1.000000
myometrial_cell_female_adult_34_years	chr2	229586860	229586906	229586885	-	High_confidence	12	13	78	2.896063	5.682587	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229357892	229586919	MSTRG.18284.2	-	229357892,229366872,229388264,229407231,229418107,229447315,229477139,229512782,229546946,229585857,229586693	229358651,229367119,229388396,229407345,229418230,229447540,229477253,229512936,229547092,229586024,229586919	0.884615
myometrial_cell_female_adult_34_years	chr7	6590246	6590293	6590278	+	High_confidence	6	6	27	1.002483	4.209867	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.962963
myometrial_cell_female_adult_34_years	chr11	17282914	17282915	17282914	+	RAMPAGE_only	7	7	11	0.408419	3.095795	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.818182
myometrial_cell_female_adult_34_years	chr5	55851361	55851383	55851382	+	High_confidence	8	8	35	1.299515	4.097713	chr5	55851124	55851720	DNA|TcMar-Tigger|Tigger17a	-	chr5	55851378	55909141	IL31RA|NM_001297570.1	+	55851378,55859508,55868790,55872269,55883043,55889969,55896349,55899915,55906105,55907358,55908264	55851633,55859599,55868908,55872451,55883195,55890135,55896429,55900132,55906288,55907460,55909141	0.800000
myometrial_cell_female_adult_34_years	chr14	65336450	65336451	65336450	+	RAMPAGE_only	7	7	7	0.259903	2.521641	chr14	65336103	65336855	LINE|L2|L2a	-	chr14	65410591	65744121	FUT8|NM_178156.2	+	65410591,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65411993,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65744121	1.000000
myometrial_cell_female_adult_34_years	chr9	32997349	32997350	32997349	-	High_confidence	14	14	14	0.519806	3.182006	chr9	32997347	32997748	LINE|L2|L2c	-	chr9	32972762	32997360	APTX|ENST00000479656.5	-	32972762,32974457,32984630,32985970,32987543,32988078,32989758,32997242	32973652,32974561,32984857,32986030,32987842,32988124,32989895,32997360	1.000000
myometrial_cell_female_adult_34_years	chr11	114295334	114295337	114295334	+	High_confidence	4	4	12	0.445548	3.027169	chr11	114294850	114295386	LTR|ERV1|LTR35A	-	chr11	114294970	114312560	MSTRG.5770.4	+	114294970,114296427,114297950,114312044	114295009,114296710,114298158,114312560	0.916667
myometrial_cell_female_adult_34_years	chr6	43013478	43013553	43013478	-	High_confidence	6	6	36	1.336644	4.879143	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.972222
myometrial_cell_female_adult_34_years	chr11	111097373	111097389	111097375	-	High_confidence	3	5	9	0.334161	2.500000	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.888889
myometrial_cell_female_adult_34_years	chr2	3536496	3536523	3536515	-	High_confidence	10	17	40	1.485160	4.577463	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.725000
myometrial_cell_female_adult_34_years	chr10	102449841	102449870	102449841	+	High_confidence	5	5	16	0.594064	3.327820	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449841	102456148	MSTRG.4072.4	+	102449841,102450186,102452089,102455336	102450022,102450330,102452187,102456148	0.937500
myometrial_cell_female_adult_34_years	chr21	33968463	33968481	33968463	-	High_confidence	3	4	8	0.297032	3.000000	chr21	33968191	33968612	LTR|ERVL-MaLR|MLT1J	-	chr21	33967100	33968573	AP000569.1|ENST00000607953.1	-	33967100,33968232	33967350,33968573	0.875000
myometrial_cell_female_adult_34_years	chr13	52570267	52570283	52570282	+	RAMPAGE_only	3	3	14	0.519806	3.238901	chr13	52569964	52570306	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.714286
myometrial_cell_female_adult_34_years	chr12	104030726	104030727	104030726	+	High_confidence	140	141	164	6.089158	6.217161	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030728	104032259	MSTRG.7300.1	+	104030728,104030917	104030852,104032259	0.865854
myometrial_cell_female_adult_34_years	chr3	196500469	196500544	196500528	-	RAMPAGE_only	7	7	45	1.670806	4.830199	chr3	196500000	196500645	LINE|L1|L1MB3	+	chr3	196471759	196503677	RNF168|ENST00000437070.1	-	196471759,196475230,196483769,196487398,196502872	196472772,196475312,196483891,196487578,196503677	0.511111
myometrial_cell_female_adult_34_years	chr11	46274422	46274469	46274422	-	High_confidence	5	5	27	1.002483	3.902175	chr11	46274366	46274400	SINE|MIR|MIR1_Amn	-	chr11	46256354	46274547	LINC02489|ENST00000527239.1	-	46256354,46274380	46256541,46274547	0.777778
myometrial_cell_female_adult_34_years	chr15	85320144	85320145	85320144	-	RAMPAGE_only	10	10	10	0.371290	3.121928	chr15	85320020	85320979	LINE|L1|L1MA4	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.600000
myometrial_cell_female_adult_34_years	chr18	42027511	42027531	42027530	+	RAMPAGE_only	3	3	6	0.222774	2.584963	chr18	42027565	42027649	DNA|hAT-Charlie|MER58B	+	chr18	42025781	42037817	PIK3C3|ENST00000590013.2	+	42025781,42027442,42029324,42033825,42037691	42025939,42027548,42029441,42033957,42037817	0.500000
myometrial_cell_female_adult_34_years	chr17	28352975	28352993	28352975	-	RAMPAGE_only	2	4	8	0.297032	2.521641	chr17	28352965	28353049	LINE|CR1|L3	+	chr17	28347660	28357463	POLDIP2|ENST00000618887.2	-	28347660,28349082,28350437,28350765,28351663,28352911,28353240,28353694,28354487,28355794,28357287	28348231,28349162,28350563,28350792,28351800,28353019,28353316,28353791,28354531,28355876,28357463	0.875000
myometrial_cell_female_adult_34_years	chr19	9140390	9140428	9140393	+	High_confidence	31	31	122	4.529740	5.992319	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.860656
myometrial_cell_female_adult_34_years	chr6	122444187	122444417	122444275	-	RAMPAGE_only	12	13	135	5.012417	4.470067	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	1.000000
myometrial_cell_female_adult_34_years	chr10	122852351	122852363	122852351	-	RAMPAGE_only	9	9	16	0.594064	3.506891	chr10	122852085	122852506	LINE|L1|L1MCa	+	chr10	122832148	122850793	CUZD1|ENST00000368904.5	-	122832148,122833671,122834705,122836177,122836830,122837403,122839016,122841177,122845761,122849236,122850423	122832450,122833940,122835097,122836350,122837048,122837554,122839231,122841328,122846220,122849439,122850793	0.812500
myometrial_cell_female_adult_34_years	chr6	28267442	28267443	28267442	+	High_confidence	4	6	6	0.222774	2.584963	chr6	28267428	28268047	LINE|L2|L2a	-	chr6	28267358	28278224	ZSCAN26|ENST00000619937.4	+	28267358,28271853,28272669,28276194	28267453,28272339,28272787,28278224	0.833333
myometrial_cell_female_adult_34_years	chr16	22007386	22007398	22007397	+	High_confidence	10	10	18	0.668322	3.794653	chr16	22006872	22007647	LINE|L2|L2a	+	chr16	22007637	22076378	MOSMO|ENST00000567004.1	+	22007637,22075486	22007696,22076378	0.611111
myometrial_cell_female_adult_34_years	chr20	45780816	45780840	45780816	-	High_confidence	5	5	14	0.519806	3.392747	chr20	45780800	45780955	SINE|MIR|MIR3	-	chr20	45774212	45779893	WFDC3|ENST00000474942.5	-	45774212,45775416,45779844	45774444,45775602,45779893	0.785714
myometrial_cell_female_adult_34_years	chr14	106845858	106845859	106845858	-	RAMPAGE_only	11	11	11	0.408419	2.913977	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106810441	106811131	IGHV3-74|ENST00000424969.2	-	106810441,106810849	106810746,106811131	0.636364
myometrial_cell_female_adult_34_years	chr5	149509878	149509919	149509878	-	RAMPAGE_only	8	8	46	1.707935	4.394429	chr5	149509722	149509839	SINE|Alu|AluJb	-	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.913043
myometrial_cell_female_adult_34_years	chr10	6737491	6737492	6737491	+	High_confidence	6	8	8	0.297032	2.750000	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	1.000000
myometrial_cell_female_adult_34_years	chr15	74174548	74174572	74174571	+	High_confidence	74	88	377	13.997638	5.425136	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	0.992042
myometrial_cell_female_adult_34_years	chr11	57568212	57568218	57568212	-	High_confidence	5	5	10	0.371290	2.721928	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	1.000000
myometrial_cell_female_adult_34_years	chr2	201452534	201452550	201452534	-	High_confidence	3	3	7	0.259903	2.521641	chr2	201452520	201452580	LINE|L2|L2a	+	chr2	201377206	201451596	TRAK2|NM_015049.2	-	201377206,201384110,201386217,201387702,201389299,201389800,201392908,201394797,201395313,201397501,201398144,201399376,201401017,201407402,201420416,201451349	201381218,201384216,201386484,201388001,201389503,201389880,201393046,201394872,201395444,201397580,201398354,201399493,201401094,201407597,201420706,201451596	0.857143
myometrial_cell_female_adult_34_years	chr12	46524333	46524348	46524333	-	High_confidence	2	5	8	0.297032	3.000000	chr12	46524331	46524524	LTR|ERVL-MaLR|MLT1M	-	chr12	46515496	46524282	MSTRG.6581.1	-	46515496,46524255	46516023,46524282	0.875000
myometrial_cell_female_adult_34_years	chr14	32619343	32619355	32619343	+	RAMPAGE_only	3	3	8	0.297032	3.000000	chr14	32618204	32621797	LINE|L1|L1PB3	-	chr14	32616977	32732765	AKAP6|ENST00000555950.5	+	32616977,32678310,32695989,32732453	32617006,32678459,32696110,32732765	0.500000
myometrial_cell_female_adult_34_years	chr1	246417412	246417413	246417412	-	High_confidence	4	4	7	0.259903	2.584963	chr1	246417275	246418033	LTR|ERV1|LTR8B	-	chr1	245749339	246417412	SMYD3|NM_022743.2	-	245749339,245764040,245858495,245863798,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246417295	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246417412	0.857143
myometrial_cell_female_adult_34_years	chr11	14337238	14337263	14337238	-	High_confidence	3	3	8	0.297032	3.000000	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.500000
myometrial_cell_female_adult_34_years	chr10	47743725	47743747	47743727	+	High_confidence	9	17	35	1.299515	4.852169	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.514286
myometrial_cell_female_adult_34_years	chr2	9234162	9234203	9234202	+	RAMPAGE_only	3	3	9	0.334161	3.169925	chr2	9234172	9234396	SINE|MIR|MIRb	+	chr2	9206784	9405677	MSTRG.16353.3	+	9206784,9206956,9279316,9297299,9318523,9320287,9323120,9327825,9334737,9335092,9344531,9344730,9350807,9356046,9356178,9358755,9368424,9374754,9376907,9378943,9380740,9385244,9388293,9393481,9400022,9400741,9401273,9403252	9206827,9207230,9279389,9297445,9318598,9320337,9323250,9327911,9334813,9335179,9344635,9344800,9350895,9356095,9356345,9358889,9368519,9374944,9376993,9379059,9380808,9385358,9388546,9393647,9400072,9400830,9401396,9405677	0.555556
myometrial_cell_female_adult_34_years	chr3	37058855	37058884	37058883	-	RAMPAGE_only	6	6	24	0.891096	3.522712	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.958333
myometrial_cell_female_adult_34_years	chr7	99410041	99410047	99410041	+	High_confidence	5	5	10	0.371290	2.947703	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.700000
myometrial_cell_female_adult_34_years	chr11	108224074	108224093	108224074	+	High_confidence	4	4	10	0.371290	2.921928	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.800000
myometrial_cell_female_adult_34_years	chr1	67791731	67791754	67791731	-	RAMPAGE_only	25	25	116	4.306965	5.296261	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701465	67833467	GNG12|ENST00000370982.3	-	67701465,67707593,67777457,67833343	67705576,67707712,67777507,67833467	0.974138
myometrial_cell_female_adult_34_years	chr14	61463050	61463051	61463050	+	High_confidence	9	9	13	0.482677	3.084963	chr14	61463043	61463245	SINE|MIR|MIRb	+	chr14	61463068	61529209	PRKCH|ENST00000555233.5	+	61463068,61485501,61529074	61463360,61485656,61529209	0.846154
myometrial_cell_female_adult_34_years	chr10	65570509	65570529	65570521	+	High_confidence	7	10	37	1.373773	4.614997	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.675676
myometrial_cell_female_adult_34_years	chr18	48621502	48621525	48621524	+	RAMPAGE_only	15	19	36	1.336644	4.675698	chr18	48621468	48621857	LINE|L2|L2a	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	0.500000
myometrial_cell_female_adult_34_years	chr1	77532082	77532123	77532106	+	High_confidence	13	13	39	1.448031	4.648510	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.769231
myometrial_cell_female_adult_34_years	chr5	138170346	138170410	138170346	-	RAMPAGE_only	4	4	15	0.556935	3.506891	chr5	138170278	138170360	DNA|hAT-Ac|OldhAT1	+	chr5	138156881	138177667	BRD8|ENST00000441656.5	-	138156881,138160068,138160890,138161795,138162053,138163129,138164086,138164319,138164713,138165827,138167933,138168469,138169221,138170344,138170831,138171037,138171360,138172064,138177570	138157267,138160173,138161068,138161864,138162146,138163344,138164133,138164413,138165166,138166108,138168078,138168688,138169349,138170409,138170912,138171160,138171410,138172134,138177667	1.000000
myometrial_cell_female_adult_34_years	chr1	54850924	54851019	54850924	-	RAMPAGE_only	6	8	39	1.448031	4.859641	chr1	54850787	54850913	SINE|MIR|MIR3	-	chr1	54849663	54886890	DHCR24|ENST00000648712.1	-	54849663,54853433,54854036,54865302,54871349,54875092,54875941,54879059,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54879319,54883773,54886890	0.974359
myometrial_cell_female_adult_34_years	chr4	152412480	152412529	152412528	-	High_confidence	3	3	8	0.297032	2.500000	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
myometrial_cell_female_adult_34_years	chr5	128082256	128082276	128082256	-	High_confidence	12	12	49	1.819322	4.746115	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127966734	128082881	LINC01184|ENST00000508353.5	-	127966734,128076946,128082734	127966928,128077093,128082881	0.591837
myometrial_cell_female_adult_34_years	chr11	111097312	111097344	111097343	-	High_confidence	9	12	65	2.413386	4.348786	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	1.000000
myometrial_cell_female_adult_34_years	chr1	116390265	116390290	116390289	+	RAMPAGE_only	4	4	12	0.445548	3.251629	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
myometrial_cell_female_adult_34_years	chr2	237422452	237422464	237422457	-	RAMPAGE_only	5	5	16	0.594064	3.506891	chr2	237422183	237422634	LTR|ERVL-MaLR|MLT1C	-	chr2	237324011	237414375	COL6A3|ENST00000295550.8	-	237324011,237325559,237333449,237334625,237336134,237339014,237340451,237342064,237344349,237344940,237345057,237345180,237346502,237347806,237348348,237348612,237350146,237351129,237352521,237353340,237354898,237357337,237357816,237358520,237359034,237359205,237359361,237360087,237361120,237361738,237363252,237364349,237365697,237366686,237368562,237371731,237374411,237376771,237378635,237380914,237387581,237394586,237396726,237413952	237324814,237325724,237333548,237334889,237336532,237339117,237341150,237342161,237344843,237344952,237345094,237345213,237346565,237347869,237348384,237348663,237350209,237351192,237352584,237353403,237354934,237357391,237357882,237358583,237359088,237359250,237359388,237360159,237361174,237361831,237363398,237364428,237366035,237367286,237369177,237372337,237375020,237377344,237379235,237381499,237388184,237395204,237396847,237414375	0.625000
myometrial_cell_female_adult_34_years	chr3	29280838	29280877	29280853	-	High_confidence	7	7	36	1.336644	4.760067	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.777778
myometrial_cell_female_adult_34_years	chr3	86944455	86944462	86944461	-	RAMPAGE_only	6	6	13	0.482677	3.418296	chr3	86944240	86944550	SINE|Alu|AluJo	-	chr3	86937968	86991107	VGLL3|ENST00000398399.6	-	86937968,86968589,86978525,86990617	86947067,86969123,86978802,86991107	0.923077
myometrial_cell_female_adult_34_years	chr22	50757247	50757252	50757247	+	High_confidence	6	7	13	0.482677	3.180833	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.846154
myometrial_cell_female_adult_34_years	chr14	72665649	72665659	72665658	+	RAMPAGE_only	21	33	67	2.487644	3.845514	chr14	72665446	72665910	LINE|L1|L1MC4a	+	chr14	72670335	72670890	MSTRG.8972.1	+	72670335	72670890	0.955224
myometrial_cell_female_adult_34_years	chr12	104280730	104280837	104280730	-	High_confidence	25	25	194	7.203028	6.214549	chr12	104280524	104280952	LTR|ERVL|MLT2D	+	chr12	104262313	104280722	AC089983.1|ENST00000549807.1	-	104262313,104280283	104262575,104280722	0.917526
myometrial_cell_female_adult_34_years	chr8	106060442	106060494	106060475	-	High_confidence	35	39	123	4.566869	6.474955	chr8	106060473	106060807	LTR|ERVL|LTR18A	+	chr8	105784804	106060477	ZFPM2-AS1|ENST00000524045.6	-	105784804,105787066,105787448,105798324,106059080,106060380	105785217,105787221,105787596,105798442,106059136,106060477	0.504065
myometrial_cell_female_adult_34_years	chr17	75017091	75017099	75017098	+	RAMPAGE_only	3	3	8	0.297032	2.500000	chr17	75017134	75017319	SINE|Alu|AluSp	+	chr17	75020228	75021261	MRPL58|ENST00000583772.1	+	75020228,75020487,75020920	75020395,75020657,75021261	1.000000
myometrial_cell_female_adult_34_years	chr12	53464773	53464785	53464784	+	RAMPAGE_only	4	5	11	0.408419	2.921928	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.909091
myometrial_cell_female_adult_34_years	chr20	416907	416908	416907	+	High_confidence	15	15	16	0.594064	3.640224	chr20	416717	416994	SINE|Alu|AluJr	+	chr20	417099	430966	MSTRG.18469.14	+	417099,417525,417731,419346,419557,420870,422126,427312,428490,430349	417342,417619,417930,419468,419731,421031,422238,427492,429094,430966	0.875000
myometrial_cell_female_adult_34_years	chr8	144427274	144427275	144427274	-	High_confidence	12	12	18	0.668322	2.586888	chr8	144427020	144427326	SINE|Alu|AluSx	+	chr8	144424964	144427294	VPS28|ENST00000531924.1	-	144424964,144425682,144426025,144426908	144425000,144425772,144426208,144427294	0.944444
myometrial_cell_female_adult_34_years	chr9	77822994	77823008	77822997	-	RAMPAGE_only	21	22	66	2.450515	4.958919	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77716273	78031449	GNAQ|NM_002072.4	-	77716273,77728513,77794462,77797519,77815615,77922160,78031099	77721513,77728667,77794592,77797648,77815770,77922345,78031449	0.924242
myometrial_cell_female_adult_34_years	chr20	35307058	35307091	35307090	-	High_confidence	17	19	54	2.004967	4.976155	chr20	35306926	35307046	SINE|MIR|MIR3	-	chr20	35302565	35307082	UQCC1|ENST00000472559.5	-	35302565,35306665	35304069,35307082	0.907407
myometrial_cell_female_adult_34_years	chr10	6737341	6737433	6737414	+	High_confidence	16	17	92	3.415869	5.493084	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.902174
myometrial_cell_female_adult_34_years	chr6	85494247	85494411	85494351	+	RAMPAGE_only	18	18	83	3.081708	3.511019	chr6	85494327	85494553	SINE|MIR|MIRc	-	chr6	85450090	85495778	NT5E|ENST00000257770.7	+	85450090,85467059,85471236,85485234,85487334,85489493,85490507,85491976,85493840	85450478,85467282,85471425,85485432,85487489,85489599,85490657,85492177,85495778	1.000000
myometrial_cell_female_adult_34_years	chr14	81170412	81170427	81170412	-	High_confidence	7	9	22	0.816838	3.845351	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.863636
myometrial_cell_female_adult_34_years	chr13	43055446	43055480	43055479	+	RAMPAGE_only	3	3	10	0.371290	2.947703	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.800000
myometrial_cell_female_adult_34_years	chr12	12927708	12927741	12927733	+	High_confidence	38	39	103	3.824288	6.177040	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.737864
myometrial_cell_female_adult_34_years	chr1	245984527	245984552	245984551	-	High_confidence	12	12	31	1.150999	4.440224	chr1	245984505	245984685	DNA|hAT-Charlie|MER5A	-	chr1	245749341	245984616	MSTRG.3062.1	-	245749341,245764040,245858495,245863798,245915529,245927930,245929869,245984468	245749664,245764149,245858670,245863886,245915640,245928033,245929937,245984616	0.967742
myometrial_cell_female_adult_34_years	chr7	101217578	101217599	101217578	-	High_confidence	13	15	50	1.856451	5.043856	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
myometrial_cell_female_adult_34_years	chr7	130916032	130916063	130916032	+	RAMPAGE_only	3	3	6	0.222774	2.584963	chr7	130915903	130916038	SINE|MIR|MIRc	+	chr7	130913463	130921946	LOC100506860|NR_109780.1	+	130913463,130914961,130915899,130921535	130913625,130915102,130916132,130921946	0.666667
myometrial_cell_female_adult_34_years	chr17	35432499	35432513	35432499	-	High_confidence	6	6	10	0.371290	3.321928	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	1.000000
myometrial_cell_female_adult_34_years	chr2	240022181	240022269	240022181	-	RAMPAGE_only	15	15	74	2.747547	3.470565	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
myometrial_cell_female_adult_34_years	chr8	18010644	18010668	18010665	+	RAMPAGE_only	3	3	13	0.482677	3.334679	chr8	18010700	18010985	SINE|Alu|AluSg	+	chr8	18013827	18027758	PCM1|ENST00000519802.5	+	18013827,18014583,18025360,18025543,18027636	18014036,18014840,18025453,18025658,18027758	0.769231
myometrial_cell_female_adult_34_years	chr10	104254223	104254264	104254223	+	High_confidence	3	3	17	0.631193	3.404543	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254193	104267464	GSTO1|NM_001191003.1	+	104254193,104255162,104259575,104262978,104266083,104267251	104254499,104255271,104259798,104263077,104266190,104267464	1.000000
myometrial_cell_female_adult_34_years	chr4	122700441	122700444	122700441	+	High_confidence	91	91	132	4.901030	6.476064	chr4	122700197	122700669	LTR|ERVL|MER70A	+	chr4	122700393	122744709	MSTRG.22866.1	+	122700393,122741882	122700566,122744709	0.719697
myometrial_cell_female_adult_34_years	chr1	151195091	151195106	151195091	-	RAMPAGE_only	9	11	28	1.039612	4.450212	chr1	151194900	151195210	SINE|Alu|AluSc8	+	chr1	151176299	151190213	VPS72|NM_001271087.1	-	151176299,151178000,151184316,151185505,151185797,151190004	151177064,151178145,151184493,151185620,151185950,151190213	0.714286
myometrial_cell_female_adult_34_years	chr2	3536836	3536873	3536862	-	High_confidence	4	4	35	1.299515	4.843569	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.885714
myometrial_cell_female_adult_34_years	chr4	89681469	89681505	89681504	+	High_confidence	176	225	374	13.886251	7.015086	chr4	89681260	89681677	LTR|ERV1|MER61C	+	chr4	89681511	89720165	MSTRG.22690.6	+	89681511,89691284,89719825	89681684,89691405,89720165	0.569519
myometrial_cell_female_adult_34_years	chr21	36005313	36005320	36005319	+	High_confidence	45	45	101	3.750030	5.506328	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.940594
myometrial_cell_female_adult_34_years	chr18	2589097	2589121	2589120	+	RAMPAGE_only	10	11	24	0.891096	4.303509	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	1.000000
myometrial_cell_female_adult_34_years	chr1	153967486	153967504	153967486	+	High_confidence	11	13	41	1.522290	4.715312	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.609756
myometrial_cell_female_adult_34_years	chr1	31376356	31376357	31376356	-	High_confidence	7	8	8	0.297032	2.807355	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.750000
myometrial_cell_female_adult_34_years	chr2	230230370	230230405	230230404	+	High_confidence	5	7	22	0.816838	4.106603	chr2	230230011	230230712	LTR|ERV1|LTR8	-	chr2	230230410	230239067	SP140|ENST00000544128.5	+	230230410,230234937,230237082,230238212,230238760	230230528,230235075,230237260,230238381,230239067	0.545455
myometrial_cell_female_adult_34_years	chr14	34650890	34650891	34650890	-	RAMPAGE_only	4	4	6	0.222774	2.584963	chr14	34650761	34650903	LTR|ERVL-MaLR|MLT1J2	+	chr14	34562408	34630183	SNX6|ENST00000362031.8	-	34562408,34567685,34567853,34575755,34581560,34586229,34593044,34597549,34603347,34605595,34608029,34609637,34629906,34630110	34563175,34567771,34568013,34575842,34581600,34586305,34593150,34597645,34603471,34605717,34608140,34609742,34629954,34630183	0.833333
myometrial_cell_female_adult_34_years	chr8	144106383	144106432	144106431	+	RAMPAGE_only	3	3	19	0.705451	3.115834	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144104511	144107611	MAF1|ENST00000534585.5	+	144104511,144105639,144105868,144106075,144106342,144106834,144107087	144104858,144105766,144105997,144106241,144106674,144106963,144107611	1.000000
myometrial_cell_female_adult_34_years	chr6	2881285	2881286	2881285	-	High_confidence	47	48	48	1.782193	4.562478	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.958333
myometrial_cell_female_adult_34_years	chr6	108960782	108960798	108960782	+	RAMPAGE_only	3	3	7	0.259903	2.521641	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108959459	108965117	ARMC2|ENST00000481850.1	+	108959459,108961571,108962013,108964179,108964979	108959519,108961694,108962127,108964312,108965117	0.571429
myometrial_cell_female_adult_34_years	chr11	14337098	14337157	14337156	-	RAMPAGE_only	6	6	31	1.150999	4.625054	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14279396	14342094	RRAS2|ENST00000531807.5	-	14279396,14281601,14294470,14294759,14295767,14341809	14279424,14281720,14294579,14294862,14295855,14342094	0.612903
myometrial_cell_female_adult_34_years	chr3	157122969	157123015	157122999	-	High_confidence	9	9	42	1.559419	4.753056	chr3	157122796	157123135	LTR|ERVL-MaLR|MLT1A1	-	chr3	157081666	157123002	LINC00880|NR_034007.1	-	157081666,157101934,157103357,157122875	157083275,157102092,157103479,157123002	0.857143
myometrial_cell_female_adult_34_years	chr1	153549103	153549134	153549133	-	High_confidence	42	60	152	5.643610	5.691236	chr1	153549066	153549188	SINE|MIR|MIRb	+	chr1	153547512	153549126	S100A3|ENST00000368712.1	-	153547512,153548344,153549027	153547846,153548490,153549126	0.598684
myometrial_cell_female_adult_34_years	chr11	47214673	47214674	47214673	+	High_confidence	5	7	7	0.259903	2.807355	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214569	47239189	MSTRG.4891.2	+	47214569,47215072,47216335,47216857,47232813,47234572,47234756,47235269,47237836,47238137,47238799	47214674,47215263,47216472,47217049,47232959,47234672,47234876,47235412,47238001,47238183,47239189	1.000000
myometrial_cell_female_adult_34_years	chr17	17686056	17686058	17686056	+	RAMPAGE_only	4	8	12	0.445548	3.022055	chr17	17685599	17686175	LINE|L2|L2b	+	chr17	17682494	17793143	RAI1|ENST00000471135.2	+	17682494,17683545,17724027,17792932	17682563,17683703,17724159,17793143	0.583333
myometrial_cell_female_adult_34_years	chr14	51599919	51599924	51599923	-	High_confidence	5	5	9	0.334161	2.750000	chr14	51599913	51599958	SINE|MIR|MIR3	+	chr14	51546628	51599920	FRMD6-AS2|ENST00000557625.1	-	51546628,51547706,51584165,51599826	51546820,51547883,51584283,51599920	0.888889
myometrial_cell_female_adult_34_years	chr1	165897942	165897965	165897942	+	High_confidence	4	6	21	0.779709	3.427333	chr1	165897854	165897970	SINE|MIR|MIR3	+	chr1	165897978	165908109	UCK2|ENST00000463772.5	+	165897978,165903181,165905920,165907683	165898004,165903279,165905969,165908109	0.904762
myometrial_cell_female_adult_34_years	chr4	102431179	102431248	102431247	-	High_confidence	26	41	164	6.089158	5.665978	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.963415
myometrial_cell_female_adult_34_years	chr11	7677206	7677248	7677246	-	High_confidence	6	14	29	1.076741	4.444188	chr11	7677065	7677444	LTR|ERVL-MaLR|THE1C	-	chr11	7669204	7677222	CYB5R2|ENST00000524608.5	-	7669204,7669624,7672450,7672747,7674225,7677147	7669334,7669731,7672523,7672891,7674493,7677222	1.000000
myometrial_cell_female_adult_34_years	chr9	111662074	111662133	111662132	+	High_confidence	4	4	29	1.076741	4.306257	chr9	111662069	111662225	LINE|L2|L2	-	chr9	111661586	111670246	MSTRG.29881.6	+	111661586,111666814,111669271	111661715,111666946,111670246	1.000000
myometrial_cell_female_adult_34_years	chr11	108694070	108694090	108694070	+	RAMPAGE_only	2	2	11	0.408419	3.095795	chr11	108693990	108694260	DNA|TcMar-Tigger|MER44B	-	chr11	108665121	108922243	DDX10|ENST00000526794.1	+	108665121,108673466,108675595,108677084,108678314,108679370,108688935,108691875,108693515,108706738,108715878,108719796,108722996,108838445,108841314,108852152,108917872	108665339,108673527,108675726,108677243,108678435,108679560,108689062,108692038,108693600,108706837,108715966,108719885,108723462,108838565,108841476,108852209,108922243	1.000000
myometrial_cell_female_adult_34_years	chr11	65499795	65499912	65499878	+	High_confidence	7	7	66	2.450515	5.738205	chr11	65499661	65499925	LINE|L1|L1M4c	+	chr11	65499041	65503609	MSTRG.5143.3	+	65499041,65499926,65503116	65499635,65502393,65503609	0.954545
myometrial_cell_female_adult_34_years	chr6	31400605	31400620	31400605	-	High_confidence	6	6	13	0.482677	3.584963	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31394288	31400525	MSTRG.25138.1	-	31394288,31398058,31400053	31395217,31398149,31400525	0.615385
myometrial_cell_female_adult_34_years	chr16	22007451	22007464	22007463	+	High_confidence	3	3	6	0.222774	2.584963	chr16	22006872	22007647	LINE|L2|L2a	+	chr16	22008134	22084654	C16orf52|NM_001164579.1	+	22008134,22075486,22080695	22008407,22075699,22084654	0.666667
myometrial_cell_female_adult_34_years	chr1	23403931	23403944	23403931	-	RAMPAGE_only	4	4	10	0.371290	2.646439	chr1	23403928	23404035	LINE|RTE-BovB|MamRTE1	+	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.600000
myometrial_cell_female_adult_34_years	chr9	121313963	121314021	121314020	+	RAMPAGE_only	7	8	26	0.965354	3.902175	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
myometrial_cell_female_adult_34_years	chr12	52201753	52201772	52201753	+	RAMPAGE_only	7	9	19	0.705451	3.536887	chr12	52201520	52201894	LTR|ERVL-MaLR|MLT1D	+	chr12	52210929	52223813	LINC00592|NR_027358.1	+	52210929,52212043,52212598,52221976,52223445	52211020,52212156,52213027,52222028,52223813	1.000000
myometrial_cell_female_adult_34_years	chr16	2769877	2769885	2769877	+	High_confidence	43	43	96	3.564385	5.224524	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2770934	SRRM2|ENST00000574866.1	+	2769894,2770351,2770603,2770857	2770227,2770465,2770717,2770934	0.937500
myometrial_cell_female_adult_34_years	chr14	20342738	20342768	20342738	-	RAMPAGE_only	7	7	27	1.002483	3.457867	chr14	20342726	20343030	SINE|Alu|AluY	-	chr14	20311367	20333312	CCNB1IP1|ENST00000437553.6	-	20311367,20313467,20316226,20317793,20325538,20326715,20329173,20333253	20311752,20313801,20316560,20317974,20325653,20326793,20329373,20333312	0.592593
myometrial_cell_female_adult_34_years	chr20	3795750	3795789	3795750	+	High_confidence	47	48	336	12.475348	6.180704	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.991071
myometrial_cell_female_adult_34_years	chr19	49086462	49086547	49086546	+	High_confidence	14	15	39	1.448031	4.631305	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.769231
myometrial_cell_female_adult_34_years	chr20	44887697	44887729	44887728	+	RAMPAGE_only	4	4	14	0.519806	2.719295	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885739	44901833	YWHAB|ENST00000428262.1	+	44885739,44887544,44901530	44885886,44887742,44901833	0.714286
myometrial_cell_female_adult_34_years	chr9	113188423	113188483	113188456	+	RAMPAGE_only	5	5	23	0.853967	3.820889	chr9	113188470	113188512	LINE|L1|X9_LINE	+	chr9	113221527	113264492	SLC31A1|NM_001859.3	+	113221527,113256113,113257112,113258693,113260271	113221678,113256277,113257185,113258862,113264492	0.826087
myometrial_cell_female_adult_34_years	chr7	121062866	121062867	121062866	+	High_confidence	134	134	169	6.274803	6.042302	chr7	121062672	121063032	LTR|ERVL-MaLR|THE1B	+	chr7	121062782	121297444	MSTRG.27481.12	+	121062782,121064237,121097698,121099925,121124330,121125819,121127089,121128381,121130124,121133822,121136039,121140826,121141972,121236713,121244201,121266226,121266706,121267214,121271283,121295439	121062896,121064313,121097831,121100094,121124473,121125892,121127257,121128486,121130294,121133893,121136090,121141013,121142141,121236831,121244338,121266447,121266808,121267302,121271430,121297444	0.952663
myometrial_cell_female_adult_34_years	chr9	125650443	125650464	125650463	-	High_confidence	4	4	14	0.519806	3.521641	chr9	125649959	125650542	LINE|L2|L2b	+	chr9	125444500	125650417	MAPKAP1|ENST00000420643.5	-	125444500,125467971,125484442,125543058,125559632,125585554,125599834,125650363	125444598,125468109,125484583,125543168,125559809,125585727,125599927,125650417	1.000000
myometrial_cell_female_adult_34_years	chr15	67186122	67186123	67186122	+	High_confidence	37	42	52	1.930709	4.755836	chr15	67185985	67186238	SINE|MIR|MIRc	-	chr15	67186661	67191521	SMAD3|ENST00000558763.1	+	67186661,67190412	67187509,67191521	0.807692
myometrial_cell_female_adult_34_years	chr12	94983812	94983840	94983833	-	RAMPAGE_only	7	7	33	1.225257	4.351410	chr12	94983699	94983861	LINE|L2|L2	+	chr12	94971332	94994353	NDUFA12|ENST00000538372.6	-	94971332,94994169	94971620,94994353	0.818182
myometrial_cell_female_adult_34_years	chr1	16981087	16981145	16981087	-	High_confidence	8	8	39	1.448031	3.942722	chr1	16980989	16981106	LINE|L2|L2b	+	chr1	16974501	16980835	MFAP2|ENST00000375535.3	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16980586	16975023,16975342,16975730,16976545,16976794,16976923,16977198,16978314,16980835	0.948718
myometrial_cell_female_adult_34_years	chr7	54759973	54759975	54759973	-	High_confidence	22	27	33	1.225257	3.962103	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.909091
myometrial_cell_female_adult_34_years	chr5	77491284	77491317	77491309	-	High_confidence	14	15	58	2.153483	4.745142	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77453865	77491285	WDR41|ENST00000504895.5	-	77453865,77459061,77463094,77464760,77489456,77491192	77453928,77459124,77463226,77464809,77489572,77491285	0.724138
myometrial_cell_female_adult_34_years	chr12	15662701	15662710	15662709	-	High_confidence	5	5	13	0.482677	3.392747	chr12	15662694	15662770	SINE|tRNA-RTE|MamSINE1	+	chr12	15621202	15662692	EPS8|ENST00000540613.5	-	15621202,15623157,15624226,15631441,15640702,15641721,15647126,15650822,15654144,15658078,15658496,15660613,15662025,15662335	15621430,15623287,15624407,15631664,15640846,15641830,15647260,15651006,15654293,15658153,15658585,15660740,15662099,15662692	1.000000
myometrial_cell_female_adult_34_years	chr14	100897920	100897921	100897920	+	High_confidence	31	31	31	1.150999	4.567100	chr14	100897872	100897994	LINE|L1|L1ME5	+	chr14	100897948	100928615	MEG8|ENST00000553465.5	+	100897948,100898956,100906097,100906935,100910232,100913431,100928098	100898053,100899085,100906163,100907132,100910304,100913521,100928615	0.516129
myometrial_cell_female_adult_34_years	chr7	29970358	29970359	29970358	-	High_confidence	5	5	8	0.297032	2.521641	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	0.875000
myometrial_cell_female_adult_34_years	chr14	101995299	101995300	101995299	+	RAMPAGE_only	5	5	7	0.259903	2.521641	chr14	101995329	101995627	SINE|Alu|AluY	+	chr14	101979315	102050154	MSTRG.9314.4	+	101979315,101979718,101980363,101983018,101983381,101985686,101987452,101988702,101991526,101994183,101994672,101994985,101995180,101997034,101999988,102000285,102000953,102001144,102001534,102002536,102002791,102004517,102004761,102005041,102005887,102007007,102008177,102009842,102010275,102010739,102011874,102012313,102015104,102015855,102016348,102017087,102017382,102018450,102019892,102022750,102026573,102027173,102027382,102027618,102027936,102029538,102029818,102030161,102032271,102033064,102033268,102033975,102034324,102036488,102038459,102038697,102039000,102039411,102039637,102040235,102040597,102041573,102042012,102042227,102042383,102042634,102043874,102044273,102044594,102047816,102048515,102049439,102049713,102050070	101979492,101979974,101980550,101983290,101983609,101986763,101987632,101988852,101991673,101994324,101994849,101995096,101995300,101997274,102000144,102000399,102001068,102001354,102001681,102002703,102002965,102004683,102004950,102005236,102006170,102007108,102008337,102010086,102010459,102010952,102012113,102012470,102015332,102016086,102016999,102017294,102017504,102018616,102020056,102022880,102026707,102027288,102027544,102027833,102028141,102029712,102029938,102030282,102032467,102033182,102033484,102034188,102034452,102036642,102038606,102038848,102039254,102039546,102039732,102040410,102040673,102041734,102042124,102042288,102042507,102042748,102044045,102044491,102044698,102048028,102048669,102049582,102049882,102050154	1.000000
myometrial_cell_female_adult_34_years	chr8	99892056	99892057	99892056	-	RAMPAGE_only	275	275	374	13.886251	4.921906	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.997326
myometrial_cell_female_adult_34_years	chr4	6673446	6673447	6673446	+	High_confidence	104	104	104	3.861417	5.174851	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	1.000000
myometrial_cell_female_adult_34_years	chr11	65181222	65181373	65181222	+	High_confidence	8	8	96	3.564385	5.353590	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.979167
myometrial_cell_female_adult_34_years	chr8	94468017	94468047	94468017	-	High_confidence	3	3	7	0.259903	2.521641	chr8	94467637	94468397	LTR|ERV1|LTR39	+	chr8	94411242	94468014	RAD54B|ENST00000523839.5	-	94411242,94458267,94467404,94467935	94411315,94458436,94467555,94468014	0.571429
myometrial_cell_female_adult_34_years	chr19	43164107	43164108	43164107	+	High_confidence	117	117	121	4.492611	4.604925	chr19	43164108	43164401	SINE|Alu|AluSq	+	chr19	43164113	43164431	MSTRG.15756.1	+	43164113	43164431	0.933884
myometrial_cell_female_adult_34_years	chr22	50330653	50330680	50330674	+	RAMPAGE_only	5	5	20	0.742580	3.884184	chr22	50330424	50330745	SINE|Alu|AluY	+	chr22	50343303	50445090	PPP6R2|ENST00000359139.7	+	50343303,50372019,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439697,50439960,50440821,50443865,50444202	50343550,50372150,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50445090	0.750000
myometrial_cell_female_adult_34_years	chr1	147173173	147173261	147173249	+	High_confidence	11	11	72	2.673289	5.468557	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.722222
myometrial_cell_female_adult_34_years	chr11	93734869	93734908	93734882	-	High_confidence	3	4	18	0.668322	3.381580	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730282	93734661	TAF1D|ENST00000525928.5	-	93730282,93730676,93731149,93731752,93732243,93733086,93733349	93730447,93730712,93731216,93731799,93732291,93733121,93734661	0.944444
myometrial_cell_female_adult_34_years	chr3	197913295	197913296	197913295	-	High_confidence	13	13	19	0.705451	3.794653	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.947368
myometrial_cell_female_adult_34_years	chr15	89588164	89588225	89588167	+	RAMPAGE_only	14	14	29	1.076741	4.430632	chr15	89586398	89589443	LINE|L2|L2a	-	chr15	89575586	89628012	TICRR|ENST00000560985.5	+	89575586,89582685,89584288,89585707,89592046,89594414,89595392,89599323,89600584,89601297,89601488,89601736,89602795,89606767,89608802,89616404,89618151,89619707,89621392,89623622,89625935,89626955	89576240,89582965,89584527,89585942,89592176,89594554,89595611,89599475,89600685,89601391,89601568,89601976,89602892,89606825,89608949,89616495,89618210,89619842,89621550,89625786,89626061,89628012	0.620690
myometrial_cell_female_adult_34_years	chr12	10363706	10363738	10363706	+	High_confidence	19	20	40	1.485160	4.953056	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.950000
myometrial_cell_female_adult_34_years	chr11	112367075	112367089	112367079	+	RAMPAGE_only	5	5	18	0.668322	3.734522	chr11	112367054	112367168	LINE|L2|L2c	-	chr11	112375694	112376626	MSTRG.5751.1	+	112375694	112376626	0.722222
myometrial_cell_female_adult_34_years	chr5	34918052	34918053	34918052	-	High_confidence	12	12	12	0.445548	3.022055	chr5	34918029	34918308	SINE|Alu|AluJo	+	chr5	34908171	34918989	RAD1|ENST00000341754.8	-	34908171,34909257,34911553,34913469,34914694,34915415,34918051,34918231,34918521	34908948,34909356,34911812,34913578,34914961,34915626,34918136,34918297,34918989	1.000000
myometrial_cell_female_adult_34_years	chr1	154975505	154975546	154975524	+	High_confidence	13	13	48	1.782193	4.838567	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.729167
myometrial_cell_female_adult_34_years	chr16	70590308	70590335	70590308	+	RAMPAGE_only	5	5	22	0.816838	3.606937	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.545455
myometrial_cell_female_adult_34_years	chr17	59892716	59892724	59892716	-	High_confidence	19	19	39	1.448031	4.753226	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.871795
myometrial_cell_female_adult_34_years	chr10	72355145	72355166	72355145	-	High_confidence	5	5	10	0.371290	2.725481	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.800000
myometrial_cell_female_adult_34_years	chr6	3083251	3083281	3083251	+	RAMPAGE_only	5	5	12	0.445548	3.418296	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	1.000000
myometrial_cell_female_adult_34_years	chr17	82081601	82081695	82081606	-	RAMPAGE_only	80	81	169	6.274803	5.433239	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079006	82085660	MSTRG.14070.4	-	82079006,82079356,82080139,82080369,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481	82079280,82079608,82080238,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085660	0.994083
myometrial_cell_female_adult_34_years	chr2	127765174	127765175	127765174	-	RAMPAGE_only	9	9	10	0.371290	2.503258	chr2	127765110	127765160	LINE|CR1|L3	-	chr2	127701021	127811147	WDR33|ENST00000322313.8	-	127701021,127708676,127709489,127709692,127713582,127717154,127719264,127721835,127722590,127722957,127723252,127724332,127724886,127725060,127726650,127763061,127764827,127765173,127768188,127768932,127770777,127811011	127706552,127708892,127709582,127709856,127714021,127717263,127720353,127721988,127722730,127723044,127723347,127724443,127724965,127725215,127726777,127763159,127764979,127765269,127768293,127769001,127771004,127811147	0.600000
myometrial_cell_female_adult_34_years	chr6	28354199	28354206	28354205	-	High_confidence	8	9	16	0.594064	3.773557	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329449	28354204	ZSCAN31|ENST00000434036.5	-	28329449,28336789,28353861,28354130	28329714,28336943,28353952,28354204	0.750000
myometrial_cell_female_adult_34_years	chr10	91185472	91185496	91185495	+	RAMPAGE_only	5	5	16	0.594064	3.773557	chr10	91179356	91186029	LINE|L1|L1PA13	-	chr10	91163011	91284331	PCGF5|NM_001257101.1	+	91163011,91222688,91240483,91248504,91248664,91251291,91261325,91264430,91271637,91278268	91163081,91222983,91240580,91248560,91248724,91251440,91261424,91264520,91271697,91284331	0.937500
myometrial_cell_female_adult_34_years	chr19	3575619	3575629	3575624	+	RAMPAGE_only	4	4	13	0.482677	3.418296	chr19	3575668	3575971	SINE|Alu|AluSx1	+	chr19	3572978	3579088	HMG20B|ENST00000488973.6	+	3572978,3573691,3575539,3576260,3576552,3576891,3577980,3578508	3573347,3574586,3575660,3576307,3576625,3577107,3578113,3579088	0.923077
myometrial_cell_female_adult_34_years	chr11	61802081	61802135	61802081	-	RAMPAGE_only	8	9	29	1.076741	4.224721	chr11	61801882	61802044	SINE|Alu|AluSx	-	chr11	61799624	61817057	FADS1|NM_013402.4	-	61799624,61802800,61803031,61803362,61803669,61804684,61806663,61810750,61810973,61812470,61813242,61816554	61802462,61802926,61803111,61803459,61803767,61804761,61806724,61810879,61811075,61812668,61813353,61817057	1.000000
myometrial_cell_female_adult_34_years	chr1	245860512	245860513	245860512	-	RAMPAGE_only	25	28	28	1.039612	4.178439	chr1	245860451	245860544	DNA|hAT-Tip100|UCON132b	-	chr1	245749350	245858647	SMYD3|ENST00000483072.5	-	245749350,245858495	245749664,245858647	0.892857
myometrial_cell_female_adult_34_years	chr5	179269465	179269466	179269465	-	High_confidence	51	55	55	2.042096	5.208410	chr5	179269301	179269658	LTR|ERVL-MaLR|THE1B	-	chr5	179110852	179269451	MSTRG.24684.2	-	179110852,179121660,179122643,179124972,179125997,179127958,179129931,179132229,179132776,179135908,179137768,179139889,179152141,179153490,179154048,179154813,179158722,179181071,179207512,179269384	179114324,179121750,179122773,179125180,179126130,179128118,179130098,179132310,179132900,179136042,179137944,179140035,179152255,179153623,179154192,179154919,179158879,179181155,179207715,179269451	0.672727
myometrial_cell_female_adult_34_years	chr6	133952689	133952693	133952692	+	High_confidence	3	3	7	0.259903	2.521641	chr6	133952660	133952828	DNA|hAT-Charlie|Charlie2a	+	chr6	133953162	133987500	TBPL1|NM_004865.3	+	133953162,133980081,133982567,133982816,133984375,133984576,133986960	133953425,133980260,133982650,133982880,133984479,133984671,133987500	0.857143
myometrial_cell_female_adult_34_years	chr6	31494712	31494743	31494730	+	High_confidence	8	8	32	1.188128	4.800813	chr6	31494550	31494850	SINE|Alu|AluSp	+	chr6	31494880	31511124	MICB|NM_001289160.1	+	31494880,31505616,31506142,31507021,31507399,31509781	31494995,31505871,31506430,31507300,31507531,31511124	0.937500
myometrial_cell_female_adult_34_years	chr9	73080433	73080445	73080444	-	High_confidence	3	4	8	0.297032	2.807355	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.500000
myometrial_cell_female_adult_34_years	chr1	155228141	155228147	155228144	-	High_confidence	4	7	18	0.668322	3.852169	chr1	155228116	155228267	LINE|L2|L2a	-	chr1	155213824	155227534	GBAP1|NR_002188.3	-	155213824,155214567,155215053,155215562,155215761,155216383,155216856,155217239,155217518,155217963,155218387,155218847,155227381	155214473,155214684,155215162,155215651,155215787,155216621,155217029,155217373,155217593,155218049,155218479,155218942,155227534	0.666667
myometrial_cell_female_adult_34_years	chr2	237769034	237769060	237769034	+	High_confidence	11	11	20	0.742580	3.821928	chr2	237769006	237769167	SINE|MIR|MIR	+	chr2	237768196	237780315	LRRFIP1|ENST00000478958.5	+	237768196,237769942,237772080,237772865,237774357,237779421	237769818,237769992,237772198,237772945,237774462,237780315	1.000000
myometrial_cell_female_adult_34_years	chr9	39810033	39810094	39810033	-	High_confidence	39	39	149	5.532223	5.357596	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.986577
myometrial_cell_female_adult_34_years	chr3	125123615	125123618	125123617	-	High_confidence	20	35	40	1.485160	4.868360	chr3	125123512	125123811	LTR|ERVL-MaLR|THE1B	-	chr3	125083142	125123599	SLC12A8|ENST00000465475.5	-	125083142,125107480,125110188,125118768,125120598,125123529	125084052,125108126,125110335,125118856,125120686,125123599	0.775000
myometrial_cell_female_adult_34_years	chr18	7946875	7946898	7946878	+	High_confidence	54	54	181	6.720351	5.461126	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8406664	MSTRG.14188.5	+	7946869,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8143646,8244057,8247844,8253226,8296367,8314780,8319177,8343422,8370889,8376045,8376461,8378264,8379166,8380295,8384560,8387071,8394475,8406108	7946977,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8143779,8244209,8247919,8253414,8296455,8314857,8319214,8343520,8371006,8376200,8376597,8378414,8379340,8380427,8384686,8387235,8394611,8406664	0.988950
myometrial_cell_female_adult_34_years	chr5	181247592	181247599	181247598	-	High_confidence	6	6	12	0.445548	2.732159	chr5	181247404	181247700	SINE|Alu|AluY	+	chr5	181238119	181247576	RACK1|ENST00000510199.5	-	181238119,181239066,181239486,181241491,181242173,181247123	181238239,181239177,181239582,181241639,181242345,181247576	0.916667
myometrial_cell_female_adult_34_years	chr5	55165825	55165829	55165825	+	RAMPAGE_only	4	4	8	0.297032	2.521641	chr5	55165723	55165875	SINE|MIR|MIR3	+	chr5	55160168	55167071	GPX8|ENST00000296734.6	+	55160168,55164054	55160396,55167071	0.875000
myometrial_cell_female_adult_34_years	chr7	137254947	137254969	137254968	-	RAMPAGE_only	5	7	11	0.408419	3.027169	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	1.000000
myometrial_cell_female_adult_34_years	chr1	151166642	151166683	151166660	+	High_confidence	12	12	83	3.081708	5.654865	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	0.975904
myometrial_cell_female_adult_34_years	chr3	33838260	33838277	33838260	+	RAMPAGE_only	5	5	15	0.556935	3.773557	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.666667
myometrial_cell_female_adult_34_years	chr13	113187330	113187445	113187444	-	High_confidence	61	67	467	17.339249	5.915723	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.965739
myometrial_cell_female_adult_34_years	chr3	11225963	11226026	11225998	+	High_confidence	16	19	96	3.564385	5.639975	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11225982	11263253	HRH1|NM_001098211.1	+	11225982,11259002	11226059,11263253	0.833333
myometrial_cell_female_adult_34_years	chr1	193115707	193115746	193115707	-	RAMPAGE_only	5	5	28	1.039612	4.356558	chr1	193115475	193116605	LINE|L1|L1MCa	+	chr1	193096466	193106535	GLRX2|NM_001319291.1	-	193096466,193097583,193101140,193106514	193096759,193097760,193101204,193106535	0.607143
myometrial_cell_female_adult_34_years	chr4	86453170	86453203	86453184	-	High_confidence	2	2	13	0.482677	3.418296	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016014	86453185	MAPK10|ENST00000641634.1	-	86016014,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194318,86354529,86429677,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86429805,86453185	0.846154
myometrial_cell_female_adult_34_years	chrX	136222393	136222471	136222393	-	RAMPAGE_only	3	3	19	0.705451	3.725481	chrX	136222161	136222377	SINE|MIR|MIR	-	chrX	136216813	136220813	MAP7D3|ENST00000471510.1	-	136216813,136219397,136219592,136220764	136217258,136219495,136219671,136220813	0.789474
myometrial_cell_female_adult_34_years	chr12	8788252	8788253	8788252	+	High_confidence	10	10	10	0.371290	2.921928	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.900000
myometrial_cell_female_adult_34_years	chr1	78104502	78104521	78104520	+	RAMPAGE_only	5	5	9	0.334161	2.500000	chr1	78104509	78104824	LINE|L2|L2c	-	chr1	78045904	78138449	GIPC2|NM_017655.5	+	78045904,78080674,78094951,78119392,78125880,78135591	78046334,78080860,78095132,78119499,78125962,78138449	0.888889
myometrial_cell_female_adult_34_years	chr1	245860587	245860626	245860593	-	RAMPAGE_only	10	12	70	2.599031	5.343289	chr1	245860451	245860544	DNA|hAT-Tip100|UCON132b	-	chr1	245749350	245858647	SMYD3|ENST00000483072.5	-	245749350,245858495	245749664,245858647	0.742857
myometrial_cell_female_adult_34_years	chr10	93496890	93496920	93496919	+	High_confidence	6	6	11	0.408419	2.845351	chr10	93496847	93496980	SINE|MIR|MIRb	-	chr10	93496631	93529092	CEP55|ENST00000371485.7	+	93496631,93500039,93503112,93506987,93515404,93516934,93518876,93519681,93527949	93496923,93500234,93503388,93507056,93515555,93517248,93518948,93519807,93529092	1.000000
myometrial_cell_female_adult_34_years	chr14	46064124	46064151	46064131	+	High_confidence	7	7	28	1.039612	4.088221	chr14	46063782	46064404	LTR|ERV1|LTR9	-	chr14	46064158	46501903	LINC00871|NR_102701.1	+	46064158,46210823,46211746,46438180,46449907,46501306	46064216,46210939,46211804,46438250,46449954,46501903	0.750000
myometrial_cell_female_adult_34_years	chr12	88063483	88063546	88063509	-	RAMPAGE_only	11	11	43	1.596548	4.971928	chr12	88063454	88063845	LINE|L2|L2a	+	chr12	88049015	88104188	CEP290|ENST00000547691.6	-	88049015,88050353,88053651,88054339,88055575,88058847,88059897,88060829,88062691,88063980,88068521,88071293,88071780,88077221,88077696,88079091,88080181,88083030,88083846,88084585,88086038,88086390,88087779,88089031,88090727,88092680,88093769,88096887,88102837	88049414,88050433,88053746,88054413,88055717,88059020,88060020,88060994,88062778,88064115,88068645,88071449,88071926,88077344,88077918,88079229,88080395,88083230,88083954,88084852,88086173,88086498,88087944,88089487,88090839,88092832,88093975,88096999,88104188	0.906977
myometrial_cell_female_adult_34_years	chr9	88072873	88072882	88072873	-	RAMPAGE_only	3	3	8	0.297032	3.000000	chr9	88072658	88073098	LTR|ERVL-MaLR|MSTA	-	chr9	88066434	88077900	LOC102724156|NR_135137.1	-	88066434,88077382,88077722	88066781,88077483,88077900	1.000000
myometrial_cell_female_adult_34_years	chr2	200888587	200888629	200888597	-	High_confidence	10	12	44	1.633677	4.661263	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.840909
myometrial_cell_female_adult_34_years	chr4	47855440	47855585	47855440	-	RAMPAGE_only	165	165	451	16.745185	6.434117	chr4	47855405	47855475	LTR|ERVL-MaLR|MLT1J	+	chr4	47847239	47878704	NFXL1|ENST00000502448.5	-	47847239,47851094,47851855,47855058,47862845,47875126,47878524	47848336,47851148,47851942,47855163,47862915,47875293,47878704	0.995565
myometrial_cell_female_adult_34_years	chr10	63594781	63594826	63594825	+	RAMPAGE_only	8	8	37	1.373773	3.693150	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	0.891892
myometrial_cell_female_adult_34_years	chrX	47179127	47179148	47179134	+	High_confidence	2	2	7	0.259903	2.807355	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	0.857143
myometrial_cell_female_adult_34_years	chr13	109272264	109272265	109272264	+	RAMPAGE_only	7	8	8	0.297032	2.807355	chr13	109271794	109272374	LTR|ERV1|LTR9	+	chr13	109269633	109273838	AL161431.1|ENST00000618966.1	+	109269633	109273838	0.750000
myometrial_cell_female_adult_34_years	chr18	36807846	36807864	36807863	-	High_confidence	5	5	15	0.556935	3.506891	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.600000
myometrial_cell_female_adult_34_years	chr1	16981569	16981642	16981575	-	High_confidence	32	32	121	4.492611	4.950706	chr1	16981567	16981905	LTR|ERV1|LTR64	+	chr1	16974501	16981586	MFAP2|NM_001135247.1	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16981513	16975023,16975342,16975730,16976545,16976794,16976923,16977195,16978314,16981586	0.958678
myometrial_cell_female_adult_34_years	chr12	122064308	122064376	122064375	+	RAMPAGE_only	102	104	356	13.217928	6.790132	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.778090
myometrial_cell_female_adult_34_years	chr3	9986887	9986916	9986898	+	High_confidence	18	19	76	2.821805	5.555438	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.736842
myometrial_cell_female_adult_34_years	chr4	168138344	168138348	168138344	+	High_confidence	5	5	9	0.334161	2.947703	chr4	168138260	168138460	LINE|L1|L1PB4	-	chr4	168138365	168187690	MSTRG.23119.2	+	168138365,168139485,168162527,168164197,168165246,168177739,168177889,168179216,168181682,168184558,168187365	168138519,168139580,168162641,168164288,168165326,168177793,168177983,168179312,168181741,168184681,168187690	1.000000
myometrial_cell_female_adult_34_years	chr6	57961647	57961653	57961647	+	High_confidence	4	4	12	0.445548	3.251629	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961437	57973690	AL445250.1|ENST00000641671.1	+	57961437,57962180,57965516,57971594,57972093	57961742,57962248,57965743,57971656,57973690	0.916667
myometrial_cell_female_adult_34_years	chr17	21000802	21000804	21000802	-	RAMPAGE_only	3	6	9	0.334161	3.000000	chr17	21000780	21001059	SINE|Alu|AluSx	+	chr17	20999592	21043039	USP22|ENST00000261497.8	-	20999592,21004201,21004927,21006895,21007869,21011150,21012829,21015751,21017941,21019083,21021112,21028541,21042664	21003073,21004351,21004990,21006987,21007996,21011309,21012935,21015899,21018111,21019185,21021226,21028674,21043039	0.888889
myometrial_cell_female_adult_34_years	chr2	20593351	20593352	20593351	-	High_confidence	7	7	7	0.259903	2.521641	chr2	20592962	20593463	LINE|L2|L2a	+	chr2	20590774	20592548	HS1BP3-IT1|NR_046836.1	-	20590774,20592421	20591247,20592548	0.714286
myometrial_cell_female_adult_34_years	chr1	196404228	196404273	196404228	-	High_confidence	21	21	86	3.193095	5.108069	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196258045	196404281	MSTRG.2577.7	-	196258045,196280859,196282272,196285656,196305233,196315891,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196258494,196280988,196282356,196285758,196305345,196316026,196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404281	0.918605
myometrial_cell_female_adult_34_years	chr9	127522793	127522834	127522793	-	RAMPAGE_only	8	8	23	0.853967	3.970573	chr9	127522529	127523072	LINE|L2|L2a	+	chr9	127505342	127568885	MSTRG.30070.2	-	127505342,127505767,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127505551,127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127568885	0.956522
myometrial_cell_female_adult_34_years	chr20	37297344	37297345	37297344	+	High_confidence	16	16	16	0.594064	3.750000	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
myometrial_cell_female_adult_34_years	chr3	138593997	138594028	138594027	-	High_confidence	4	4	8	0.297032	2.521641	chr3	138593850	138594045	SINE|MIR|MIRb	-	chr3	138572858	138594129	CEP70|ENST00000485115.1	-	138572858,138591853,138593708	138572932,138591956,138594129	0.625000
myometrial_cell_female_adult_34_years	chr22	50757120	50757130	50757129	+	High_confidence	4	5	13	0.482677	3.085055	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.923077
myometrial_cell_female_adult_34_years	chr3	158792818	158792827	158792826	-	High_confidence	6	7	13	0.482677	2.688722	chr3	158792768	158793494	DNA|TcMar-Tigger|Tigger7	+	chr3	158780770	158792812	MSTRG.21660.1	-	158780770,158792779	158781090,158792812	0.923077
myometrial_cell_female_adult_34_years	chr1	112936000	112936022	112936000	-	High_confidence	12	14	47	1.745064	4.809492	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	0.957447
myometrial_cell_female_adult_34_years	chr4	177191956	177191959	177191956	+	RAMPAGE_only	6	6	13	0.482677	3.392747	chr4	177191614	177192038	LTR|ERV1|LTR56	+	chr4	177205851	177228950	MSTRG.23184.1	+	177205851,177228543	177205987,177228950	0.615385
myometrial_cell_female_adult_34_years	chr4	47863559	47863582	47863559	-	RAMPAGE_only	3	3	12	0.445548	3.095795	chr4	47863399	47863699	SINE|Alu|AluSz6	+	chr4	47851082	47852208	NFXL1|ENST00000511452.1	-	47851082,47851855	47851148,47852208	0.583333
myometrial_cell_female_adult_34_years	chr2	110642789	110642790	110642789	-	High_confidence	34	34	34	1.262386	4.292770	chr2	110642693	110642986	SINE|Alu|AluJr	-	chr2	110641325	110642790	BUB1|ENST00000478175.1	-	110641325,110641641,110642118,110642448	110641464,110641803,110642234,110642790	0.882353
myometrial_cell_female_adult_34_years	chr12	54187904	54187905	54187904	-	High_confidence	7	7	7	0.259903	2.807355	chr12	54187852	54187993	LINE|L2|L2c	-	chr12	54181452	54188607	SMUG1|ENST00000506595.5	-	54181452,54182503,54183655,54188514	54181647,54182623,54183959,54188607	1.000000
myometrial_cell_female_adult_34_years	chr2	46855841	46855843	46855841	+	High_confidence	4	8	11	0.408419	2.845351	chr2	46855816	46855950	DNA|hAT-Charlie|MER5B	+	chr2	46855687	46858579	LINC01119|ENST00000495449.1	+	46855687,46858079	46855990,46858579	0.909091
myometrial_cell_female_adult_34_years	chr19	17336685	17336720	17336685	+	High_confidence	11	11	27	1.002483	3.873141	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.740741
myometrial_cell_female_adult_34_years	chr18	46087042	46087080	46087042	-	High_confidence	8	8	29	1.076741	4.664498	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.586207
myometrial_cell_female_adult_34_years	chr1	94287334	94287378	94287377	+	RAMPAGE_only	84	88	181	6.720351	4.346491	chr1	94287201	94287494	LTR|ERVL-MaLR|THE1D	+	chr1	94247865	94334848	AC097059.1|ENST00000413103.2	+	94247865,94249412,94250378,94333308,94334511	94248039,94249519,94250544,94333409,94334848	0.966851
myometrial_cell_female_adult_34_years	chr16	29697332	29697502	29697501	+	RAMPAGE_only	9	9	70	2.599031	4.768048	chr16	29697491	29697661	SINE|MIR|MIR	+	chr16	29695796	29697995	QPRT|ENST00000564967.1	+	29695796	29697995	0.685714
myometrial_cell_female_adult_34_years	chr9	20694517	20694518	20694517	+	RAMPAGE_only	8	8	8	0.297032	3.000000	chr9	20694323	20694599	DNA|hAT-Charlie|Charlie15b	-	chr9	20684261	20995948	MSTRG.29265.6	+	20684261,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20684293,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	1.000000
myometrial_cell_female_adult_34_years	chr14	102235423	102235481	102235458	-	High_confidence	28	28	106	3.935675	5.504383	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.952830
myometrial_cell_female_adult_34_years	chr14	39064921	39064986	39064921	-	RAMPAGE_only	5	5	20	0.742580	3.681881	chr14	39064766	39064897	SINE|Alu|FLAM_C	-	chr14	39031918	39088723	SEC23A|ENST00000537403.5	-	39031918,39039030,39040731,39042785,39045162,39048651,39055142,39061764,39063323,39064912,39067172,39074414,39075934,39085761,39086928,39087523	39033328,39039096,39040887,39042872,39045324,39048729,39055296,39061871,39063413,39064993,39067296,39074530,39076093,39085906,39087008,39088723	0.950000
myometrial_cell_female_adult_34_years	chr16	2769953	2769954	2769953	+	High_confidence	8	8	11	0.408419	2.721928	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2770934	SRRM2|ENST00000574866.1	+	2769894,2770351,2770603,2770857	2770227,2770465,2770717,2770934	0.818182
myometrial_cell_female_adult_34_years	chr1	12409848	12409855	12409854	+	RAMPAGE_only	7	7	20	0.742580	3.681881	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.900000
myometrial_cell_female_adult_34_years	chr19	3062922	3062983	3062922	-	High_confidence	43	50	160	5.940642	5.717278	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.975000
myometrial_cell_female_adult_34_years	chr8	42193732	42193773	42193772	-	High_confidence	26	26	56	2.079225	4.474691	chr8	42193715	42194009	SINE|Alu|AluY	-	chr8	42187400	42193727	PLAT|ENST00000520523.5	-	42187400,42187905,42188933,42191371,42193113,42193619	42187572,42188016,42189071,42191414,42193211,42193727	0.946429
myometrial_cell_female_adult_34_years	chrX	47658623	47658680	47658623	-	High_confidence	16	16	85	3.155966	2.910005	chrX	47658369	47658606	SINE|MIR|MIR	-	chrX	47651800	47659107	UXT|ENST00000485641.5	-	47651800,47652080,47657182,47657781,47658829	47651895,47652144,47657290,47657863,47659107	0.964706
myometrial_cell_female_adult_34_years	chr22	50785210	50785261	50785260	+	RAMPAGE_only	5	5	29	1.076741	4.102679	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.827586
myometrial_cell_female_adult_34_years	chr2	237433149	237433150	237433149	-	RAMPAGE_only	6	6	6	0.222774	2.584963	chr2	237433039	237433227	DNA|hAT-Ac|OldhAT1	+	chr2	237324084	237434900	MSTRG.18378.6	-	237324084,237325559,237333449,237334625,237336134,237339014,237340451,237342064,237344349,237344940,237345057,237345180,237346502,237347806,237348348,237348612,237350146,237351129,237352521,237353340,237354898,237357337,237357816,237358520,237359034,237359205,237359361,237360087,237361120,237361738,237363252,237364349,237365697,237366686,237368562,237371731,237374411,237376771,237378635,237380914,237387581,237396726,237413952,237414439,237422124,237425218,237425927,237433060,237434656	237324814,237325724,237333548,237334889,237336532,237339117,237341150,237342161,237344843,237344952,237345094,237345213,237346565,237347869,237348384,237348663,237350209,237351192,237352584,237353403,237354934,237357391,237357882,237358583,237359088,237359250,237359388,237360159,237361174,237361831,237363398,237364428,237366035,237367286,237369177,237372337,237375020,237377344,237379235,237381499,237388184,237396847,237414179,237414531,237422233,237425303,237426032,237433156,237434900	1.000000
myometrial_cell_female_adult_34_years	chr1	162874632	162874634	162874632	-	RAMPAGE_only	11	20	20	0.742580	3.646439	chr1	162874383	162874749	LTR|ERVL-MaLR|MLT1C	-	chr1	162854296	162868815	CCDC190|NM_178550.4	-	162854296,162855631,162859459,162868652	162855359,162855758,162859658,162868815	0.900000
myometrial_cell_female_adult_34_years	chr12	93773408	93773438	93773411	+	High_confidence	208	259	693	25.730406	6.180785	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93773420	93850667	MSTRG.7192.10	+	93773420,93798644,93849969	93773486,93798816,93850667	0.913420
myometrial_cell_female_adult_34_years	chr12	15780729	15780733	15780732	-	High_confidence	13	13	30	1.113870	3.865765	chr12	15780696	15780826	LINE|L2|L2c	+	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.666667
myometrial_cell_female_adult_34_years	chr6	132687353	132687375	132687374	-	High_confidence	37	40	107	3.972804	5.157381	chr6	132687157	132687546	LINE|L1|HAL1	+	chr6	132681712	132687416	MSTRG.25987.2	-	132681712,132684334,132685254,132686598	132683322,132684505,132685403,132687416	0.990654
myometrial_cell_female_adult_34_years	chr3	196500765	196500780	196500779	-	RAMPAGE_only	8	9	18	0.668322	3.734522	chr3	196500717	196501010	SINE|Alu|AluY	-	chr3	196496213	196503754	MSTRG.22025.3	-	196496213,196502872	196496471,196503754	0.500000
myometrial_cell_female_adult_34_years	chr15	32613742	32613760	32613759	+	High_confidence	3	3	8	0.297032	2.521641	chr15	32613534	32613838	SINE|Alu|AluSg7	+	chr15	32613732	32615111	AC123768.2|ENST00000500941.2	+	32613732,32614108,32614739	32613998,32614202,32615111	0.500000
myometrial_cell_female_adult_34_years	chr14	91462186	91462216	91462215	-	High_confidence	3	3	11	0.408419	2.845351	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	1.000000
myometrial_cell_female_adult_34_years	chr20	3208662	3208676	3208662	+	High_confidence	4	4	12	0.445548	2.913977	chr20	3208378	3208669	SINE|Alu|AluSp	-	chr20	3208867	3223870	ITPA|ENST00000483354.5	+	3208867,3213168,3213984,3215280,3218516,3221840,3223365	3209033,3213226,3214058,3215312,3218632,3221917,3223870	0.833333
myometrial_cell_female_adult_34_years	chr9	20658312	20658347	20658338	+	High_confidence	20	23	69	2.561902	5.104405	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.536232
myometrial_cell_female_adult_34_years	chr1	39026110	39026136	39026130	+	High_confidence	7	7	31	1.150999	4.079376	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
myometrial_cell_female_adult_34_years	chr8	61578141	61578142	61578141	+	High_confidence	349	349	355	13.180799	5.584687	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.980282
myometrial_cell_female_adult_34_years	chr19	39485759	39485803	39485802	+	High_confidence	15	15	34	1.262386	4.172186	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	1.000000
myometrial_cell_female_adult_34_years	chr11	108223493	108223509	108223501	+	High_confidence	2	2	8	0.297032	2.521641	chr11	108223533	108223589	SINE|MIR|MIR	+	chr11	108223528	108229364	ATM|ENST00000526567.5	+	108223528,108227594,108227775,108229177	108223686,108227696,108227888,108229364	0.500000
myometrial_cell_female_adult_34_years	chr11	13419711	13419730	13419729	-	RAMPAGE_only	5	5	12	0.445548	3.022055	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	1.000000
myometrial_cell_female_adult_34_years	chr6	75275194	75275200	75275195	-	RAMPAGE_only	5	8	18	0.668322	3.169925	chr6	75275027	75275754	LINE|L2|L2a	+	chr6	75253612	75272900	TMEM30A|ENST00000370050.9	-	75253612,75258779,75259346,75260823,75265230,75267640,75272463	75256295,75258986,75259490,75260911,75265338,75267748,75272900	1.000000
myometrial_cell_female_adult_34_years	chr6	127330928	127330966	127330928	-	High_confidence	2	2	10	0.371290	2.947703	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.800000
myometrial_cell_female_adult_34_years	chr10	98391166	98391200	98391199	-	RAMPAGE_only	19	19	71	2.636160	4.742744	chr10	98391143	98391387	LINE|L2|L2c	+	chr10	98383564	98388572	MSTRG.3980.1	-	98383564,98384946,98387200,98387864,98388353	98383868,98385067,98387307,98388084,98388572	0.676056
myometrial_cell_female_adult_34_years	chr18	36122222	36122264	36122263	-	High_confidence	2	3	8	0.297032	2.807355	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.750000
myometrial_cell_female_adult_34_years	chr1	54413473	54413493	54413492	-	RAMPAGE_only	17	17	56	2.079225	4.792377	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54226631	54406419	SSBP3|ENST00000371320.7	-	54226631,54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54257126,54258068,54281437,54401860,54404575,54404857,54405952	54227160,54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257186,54258149,54281527,54401945,54404637,54404930,54406419	0.642857
myometrial_cell_female_adult_34_years	chr12	65557743	65557744	65557743	+	RAMPAGE_only	15	15	15	0.556935	3.506891	chr12	65557269	65557890	LTR|ERV1|MER41B	+	chr12	65559590	65560889	AC090023.1|ENST00000545750.1	+	65559590,65560585	65559729,65560889	0.866667
myometrial_cell_female_adult_34_years	chr3	57197102	57197110	57197109	+	RAMPAGE_only	10	17	35	1.299515	4.136286	chr3	57196989	57197284	SINE|Alu|AluYc	-	chr3	57227725	57278105	APPL1|ENST00000650354.1	+	57227725,57235565,57237491,57238044,57240464,57242100,57242855,57246075,57247394,57248192,57249359,57252268,57253681,57256956,57257245,57259027,57259844,57260116,57260627,57267741,57268397,57269540,57276303,57277792	57227937,57235664,57237551,57238116,57240552,57242142,57242914,57246222,57247477,57248351,57249548,57252311,57253738,57257051,57257428,57259080,57260019,57260153,57260774,57267792,57268487,57269751,57276459,57278105	0.571429
myometrial_cell_female_adult_34_years	chr8	143281653	143281687	143281686	-	High_confidence	90	100	354	13.143670	5.006648	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.754237
myometrial_cell_female_adult_34_years	chr17	59619868	59619923	59619894	+	High_confidence	1630	1922	6204	230.348393	5.473709	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.949549
myometrial_cell_female_adult_34_years	chr9	129488843	129488905	129488856	+	High_confidence	15	15	49	1.819322	4.056777	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.918367
myometrial_cell_female_adult_34_years	chr6	79631256	79631303	79631273	+	High_confidence	47	47	296	10.990188	6.047271	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.993243
myometrial_cell_female_adult_34_years	chr11	72113649	72113704	72113703	-	High_confidence	12	15	45	1.670806	4.563532	chr11	72113605	72113746	SINE|MIR|MIRc	+	chr11	72109586	72112780	ANAPC15|ENST00000227618.8	-	72109586,72110087,72110543,72111156,72111411,72112649	72109928,72110225,72110603,72111286,72111496,72112780	0.955556
myometrial_cell_female_adult_34_years	chr4	89681331	89681344	89681331	+	High_confidence	4	4	10	0.371290	2.503258	chr4	89681260	89681677	LTR|ERV1|MER61C	+	chr4	89681511	89720165	MSTRG.22690.6	+	89681511,89691284,89719825	89681684,89691405,89720165	0.800000
myometrial_cell_female_adult_34_years	chr1	43361209	43361210	43361209	+	RAMPAGE_only	9	9	12	0.445548	2.845351	chr1	43361240	43361490	LINE|L2|L2	+	chr1	43359012	43363203	CDC20|ENST00000372462.1	+	43359012,43359489,43359724,43359968,43360192,43360498,43360732,43361119,43362194,43362950	43359396,43359638,43359821,43360097,43360389,43360593,43360961,43361245,43362312,43363203	0.916667
myometrial_cell_female_adult_34_years	chr20	46684487	46684508	46684487	-	High_confidence	15	15	28	1.039612	4.253434	chr20	46684315	46684677	LTR|ERVL-MaLR|THE1C	-	chr20	46557822	46684485	SLC13A3|NM_001193340.1	-	46557822,46563413,46566228,46575572,46583571,46589159,46592403,46596156,46599970,46610445,46613459,46670042,46684395	46560198,46563551,46566390,46575685,46583669,46589255,46592529,46596342,46600037,46610609,46613725,46670139,46684485	0.571429
myometrial_cell_female_adult_34_years	chr1	51403428	51403453	51403428	-	RAMPAGE_only	3	3	13	0.482677	2.855389	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.923077
myometrial_cell_female_adult_34_years	chr1	155753942	155753943	155753942	-	RAMPAGE_only	25	25	25	0.928225	3.543465	chr1	155753874	155753977	SINE|Alu|AluSz6	-	chr1	155750331	155776461	MSTRG.2210.5	-	155750331,155751766,155751959,155753203,155754374,155756957,155757179,155757890,155760443,155762189,155763311,155764999,155767424,155771066,155773065,155774962,155776394	155750733,155751869,155752587,155753414,155754488,155757077,155757323,155758034,155760641,155762374,155763564,155766709,155767541,155771217,155773210,155775173,155776461	0.560000
myometrial_cell_female_adult_34_years	chr1	238486003	238486036	238486003	-	High_confidence	11	14	48	1.782193	5.256717	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480383	238486017	LINC01139|NR_015407.1	-	238480383,238485784	238481681,238486017	0.875000
myometrial_cell_female_adult_34_years	chr15	34988766	34988792	34988766	-	High_confidence	2	4	9	0.334161	3.169925	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.888889
myometrial_cell_female_adult_34_years	chr22	39021125	39021182	39021181	+	High_confidence	7	8	45	1.670806	4.817086	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.977778
myometrial_cell_female_adult_34_years	chr3	191235728	191235731	191235730	-	RAMPAGE_only	18	26	33	1.225257	4.284684	chr3	191235058	191235997	LTR|ERV1|LTR78	-	chr3	191213290	191234605	OSTN-AS1|NR_133663.1	-	191213290,191217069,191218815,191228714,191229765,191234571	191213340,191217179,191218936,191228782,191229897,191234605	0.848485
myometrial_cell_female_adult_34_years	chr4	3929590	3929660	3929598	-	RAMPAGE_only	25	30	85	3.155966	5.521345	chr4	3927854	3930775	LTR|ERV1|HERVH-int	+	chr4	3915186	3924274	AC226119.2|ENST00000513501.1	-	3915186,3917820,3921623,3924070	3915272,3917901,3921782,3924274	0.611765
myometrial_cell_female_adult_34_years	chr11	310094	310146	310110	+	High_confidence	5	7	22	0.816838	3.533771	chr11	309444	310164	LTR|ERV1|LTR30	-	chr11	310150	315272	MSTRG.4348.7	+	310150,313996,314921	310314,314356,315272	1.000000
myometrial_cell_female_adult_34_years	chr12	9645304	9645305	9645304	+	RAMPAGE_only	15	15	18	0.668322	3.690117	chr12	9645124	9645474	LTR|ERVL-MaLR|THE1B	+	chr12	9642867	9658415	LOC374443|NR_046449.2	+	9642867,9653682,9655872,9656920	9643103,9653808,9655979,9658415	0.888889
myometrial_cell_female_adult_34_years	chr10	78977962	78977972	78977971	-	RAMPAGE_only	5	6	12	0.445548	2.732159	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78962394	ZMIZ1-AS1|ENST00000428862.5	-	78943327,78945911,78960504,78961253	78944747,78945989,78960716,78962394	0.833333
myometrial_cell_female_adult_34_years	chr1	40067240	40067258	40067255	+	High_confidence	7	7	24	0.891096	3.675311	chr1	40067175	40067278	LINE|L2|L2	-	chr1	40067269	40071581	CAP1|ENST00000479759.5	+	40067269,40067539,40069689,40070158,40070429,40070835,40071449	40067311,40067717,40069874,40070282,40070512,40070979,40071581	0.958333
myometrial_cell_female_adult_34_years	chr2	202135838	202135851	202135838	+	High_confidence	4	4	8	0.297032	2.521641	chr2	202135840	202135976	SINE|MIR|MIRc	+	chr2	202135715	202197862	KIAA2012|ENST00000469462.1	+	202135715,202154672,202165283,202184752,202186932,202188151,202190173,202193300,202194189,202196799	202138508,202154810,202165356,202184843,202187098,202188266,202190493,202193503,202194362,202197862	0.875000
myometrial_cell_female_adult_34_years	chr1	162781487	162781568	162781487	+	RAMPAGE_only	5	5	39	1.448031	4.574054	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.948718
myometrial_cell_female_adult_34_years	chr12	643627	643636	643627	-	High_confidence	16	22	48	1.782193	3.643051	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.958333
myometrial_cell_female_adult_34_years	chr9	127451087	127451105	127451104	-	High_confidence	4	4	9	0.334161	2.725481	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	1.000000
myometrial_cell_female_adult_34_years	chr19	49539126	49539166	49539126	+	RAMPAGE_only	5	5	18	0.668322	4.087463	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49542601	49543633	RCN3|ENST00000593483.1	+	49542601,49543105	49542668,49543633	0.777778
myometrial_cell_female_adult_34_years	chr3	134485403	134485471	134485447	-	High_confidence	7	7	64	2.376257	5.338054	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	1.000000
myometrial_cell_female_adult_34_years	chr15	45645876	45645903	45645902	+	High_confidence	5	6	31	1.150999	3.952303	chr15	45645871	45646155	DNA|hAT-Tip100|Arthur1C	+	chr15	45645880	45669946	SQOR|ENST00000561493.5	+	45645880,45658906,45661954,45669927	45646008,45659157,45662125,45669946	0.741935
myometrial_cell_female_adult_34_years	chr9	128684459	128684493	128684459	-	RAMPAGE_only	11	13	93	3.452998	4.423415	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.860215
myometrial_cell_female_adult_34_years	chr1	154976109	154976136	154976135	+	High_confidence	7	7	17	0.631193	3.625000	chr1	154976174	154976291	LINE|CR1|L3	+	chr1	154975538	154978916	CKS1B|ENST00000473344.1	+	154975538,154977986,154978724	154975608,154978114,154978916	0.705882
myometrial_cell_female_adult_34_years	chr5	140534340	140534341	140534340	+	RAMPAGE_only	5	5	7	0.259903	2.584963	chr5	140534110	140534410	SINE|Alu|AluY	+	chr5	140528913	140549569	ANKHD1-EIF4EBP3|ENST00000437495.1	+	140528913,140535361,140537337,140538085,140538918,140542171,140548905,140549233	140529796,140535538,140537589,140538234,140539083,140542281,140549076,140549569	0.857143
myometrial_cell_female_adult_34_years	chr19	45450757	45450766	45450757	-	High_confidence	7	7	16	0.594064	3.875000	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.500000
myometrial_cell_female_adult_34_years	chr19	44662540	44662581	44662540	+	RAMPAGE_only	3	3	15	0.556935	3.640224	chr19	44662524	44662736	LTR|ERVL|MER77	-	chr19	44643913	44663583	PVR|ENST00000187830.2	+	44643913,44647299,44649808,44653899,44657761,44658741,44661291,44661739	44644175,44647570,44650105,44654017,44657910,44658900,44661323,44663583	1.000000
myometrial_cell_female_adult_34_years	chr16	79304	79305	79304	+	RAMPAGE_only	8	8	11	0.408419	3.321928	chr16	79240	79330	SINE|MIR|MIR	-	chr16	78256	85842	MPG|ENST00000219431.4	+	78256,79138,79424,83051,85400	78333,79331,79700,83256,85842	0.909091
myometrial_cell_female_adult_34_years	chr1	16981186	16981200	16981186	-	High_confidence	6	6	12	0.445548	2.845351	chr1	16981145	16981282	SINE|Alu|AluJr	-	chr1	16974501	16980835	MFAP2|ENST00000375535.3	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16980586	16975023,16975342,16975730,16976545,16976794,16976923,16977198,16978314,16980835	0.916667
myometrial_cell_female_adult_34_years	chr11	72111432	72111441	72111432	-	High_confidence	7	9	17	0.631193	3.577820	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.941176
myometrial_cell_female_adult_34_years	chr11	61949773	61949821	61949811	+	High_confidence	4	4	10	0.371290	3.321928	chr11	61949804	61949945	SINE|MIR|MIR3	-	chr11	61949820	61964461	BEST1|ENST00000378043.8	+	61949820,61951770,61955106,61955717,61956843,61957386,61958145,61959497,61959891,61962254,61964103	61950427,61951958,61955201,61955951,61956998,61957464,61958298,61959578,61960043,61962893,61964461	1.000000
myometrial_cell_female_adult_34_years	chr12	96892473	96892474	96892473	+	RAMPAGE_only	9	9	9	0.334161	2.725481	chr12	96892283	96892630	LTR|ERVL-MaLR|THE1A	+	chr12	96907222	96953777	NEDD1|ENST00000266742.8	+	96907222,96907603,96909751,96912722,96917620,96919984,96934975,96936610,96937197,96940408,96942576,96943559,96944638,96945692,96951431,96951948	96907300,96907856,96909895,96912817,96917737,96920125,96935205,96936812,96937393,96940537,96942624,96943762,96944795,96945849,96951498,96953777	0.888889
myometrial_cell_female_adult_34_years	chr21	36005131	36005168	36005167	+	High_confidence	3	3	9	0.334161	2.641604	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	1.000000
myometrial_cell_female_adult_34_years	chr3	193614810	193614824	193614823	+	High_confidence	8	8	14	0.519806	2.653544	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.857143
myometrial_cell_female_adult_34_years	chr8	102925036	102925070	102925045	+	RAMPAGE_only	7	7	24	0.891096	4.053509	chr8	102925075	102925163	DNA|hAT-Charlie|MER5B	+	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.750000
myometrial_cell_female_adult_34_years	chr12	91179462	91179549	91179525	-	High_confidence	412	566	3252	120.743549	7.442554	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91145258	91179582	DCN|ENST00000393155.5	-	91145258,91151653,91153095,91157074,91158295,91164604,91178341,91179361	91146252,91151792,91153189,91157188,91158509,91164717,91178585,91179582	0.970787
myometrial_cell_female_adult_34_years	chr14	72665552	72665553	72665552	+	RAMPAGE_only	9	9	11	0.408419	3.095795	chr14	72665446	72665910	LINE|L1|L1MC4a	+	chr14	72670335	72670890	MSTRG.8972.1	+	72670335	72670890	0.818182
myometrial_cell_female_adult_34_years	chr5	151687240	151687251	151687244	-	High_confidence	16	16	32	1.188128	4.663910	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
myometrial_cell_female_adult_34_years	chr7	87040217	87040223	87040222	-	RAMPAGE_only	5	5	10	0.371290	2.921928	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.700000
myometrial_cell_female_adult_34_years	chr12	10363662	10363663	10363662	+	High_confidence	5	8	8	0.297032	2.500000	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	1.000000
myometrial_cell_female_adult_34_years	chr15	49135558	49135559	49135558	-	RAMPAGE_only	25	27	27	1.002483	4.323856	chr15	49135315	49135597	LINE|L2|L2c	-	chr15	49127535	49155604	COPS2|ENST00000542928.5	-	49127535,49128701,49129476,49130718,49133758,49133929,49134339,49137149,49137347,49139527,49155524	49128094,49128760,49129559,49130816,49133811,49134108,49134514,49137227,49137437,49139653,49155604	0.851852
myometrial_cell_female_adult_34_years	chr6	136584527	136584538	136584527	-	RAMPAGE_only	12	12	25	0.928225	3.795089	chr6	136584318	136584690	LTR|ERVL-MaLR|THE1B	-	chr6	136557046	136792518	MAP3K5|ENST00000359015.4	-	136557046,136558799,136561532,136562502,136567630,136580300,136583554,136592172,136592436,136601021,136601801,136605208,136611281,136613119,136614158,136622847,136637324,136639542,136642519,136650983,136656306,136659218,136669282,136694139,136695950,136697218,136698488,136705109,136720449,136791709	136557818,136558876,136561645,136562615,136567874,136580406,136583740,136592341,136592614,136601042,136601979,136605366,136611387,136613256,136614286,136622981,136637406,136639638,136642569,136651091,136656460,136659378,136669395,136694310,136696057,136697387,136698682,136705133,136720589,136792518	0.920000
myometrial_cell_female_adult_34_years	chr3	129256145	129256146	129256145	+	RAMPAGE_only	6	6	9	0.334161	2.725481	chr3	129256170	129256401	DNA|hAT|MamRep38	+	chr3	129260226	129265675	COPG1|ENST00000504547.1	+	129260226,129260618,129263903,129265548	129260400,129260807,129263999,129265675	0.888889
myometrial_cell_female_adult_34_years	chr19	13037399	13037412	13037399	+	RAMPAGE_only	3	3	13	0.482677	3.584963	chr19	13037335	13037620	LINE|CR1|L3b	+	chr19	13024938	13094770	NFIX|ENST00000587260.1	+	13024938,13073046,13073421,13073905,13075534,13078612,13081679,13090298,13094634	13025552,13073109,13073496,13074026,13075671,13078735,13081855,13090390,13094770	0.923077
myometrial_cell_female_adult_34_years	chr15	96285409	96285504	96285489	-	RAMPAGE_only	22	25	140	5.198062	5.970713	chr15	96285441	96285601	LINE|RTE-BovB|MamRTE1	+	chr15	96266385	96282971	NR2F2-AS1|ENST00000561402.5	-	96266385,96269847,96271702,96282831	96266589,96269996,96271798,96282971	0.628571
myometrial_cell_female_adult_34_years	chr13	52236223	52236228	52236227	-	RAMPAGE_only	5	8	16	0.594064	3.323231	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219351	52254020	TPTE2P2|ENST00000606973.5	-	52219351,52223238,52227004,52229325,52253744,52253936	52222633,52223331,52227096,52229431,52253833,52254020	0.625000
myometrial_cell_female_adult_34_years	chr16	30429230	30429263	30429260	-	High_confidence	4	4	19	0.705451	3.683542	chr16	30429210	30429354	SINE|MIR|MIR3	+	chr16	30423913	30429289	DCTPP1|ENST00000568434.1	-	30423913,30429056	30424533,30429289	0.894737
myometrial_cell_female_adult_34_years	chr20	50172544	50172595	50172566	+	High_confidence	10	10	77	2.858934	5.574784	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.818182
myometrial_cell_female_adult_34_years	chr3	189121294	189121299	189121294	+	RAMPAGE_only	3	3	8	0.297032	2.500000	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.875000
myometrial_cell_female_adult_34_years	chr15	82093996	82094067	82094031	+	RAMPAGE_only	33	33	142	5.272320	5.076600	chr15	82093781	82094459	DNA|TcMar-Tigger|Tigger7	+	chr15	82088632	82095707	LINC01583|ENST00000559788.1	+	82088632,82091726,82095481	82088728,82091935,82095707	0.816901
myometrial_cell_female_adult_34_years	chr7	100102247	100102299	100102298	+	High_confidence	21	21	57	2.116354	5.236369	chr7	100102098	100102390	SINE|Alu|AluSx1	+	chr7	100102060	100107148	AP4M1|ENST00000422582.5	+	100102060,100102674,100102863,100103408,100103611,100104091,100104873,100105044,100105239,100105444,100105958,100106240,100106402,100106657	100102393,100102781,100102960,100103519,100103692,100104154,100104940,100105098,100105346,100105539,100106003,100106291,100106514,100107148	0.947368
myometrial_cell_female_adult_34_years	chr12	53033939	53034022	53034021	+	RAMPAGE_only	6	7	52	1.930709	5.262846	chr12	53034069	53034237	DNA|hAT-Charlie|MER20B	+	chr12	53037725	53040352	EIF4B|ENST00000549592.1	+	53037725,53039629,53040142	53039343,53039702,53040352	0.538462
myometrial_cell_female_adult_34_years	chr5	95509594	95509617	95509594	-	RAMPAGE_only	3	4	7	0.259903	2.807355	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95502902	95516674	TTC37|ENST00000508181.5	-	95502902,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524	95503003,95503938,95506992,95509687,95512618,95513645,95514923,95516409,95516674	0.571429
myometrial_cell_female_adult_34_years	chr4	177192745	177192746	177192745	-	High_confidence	524	527	538	19.975409	5.735344	chr4	177192339	177193759	LTR|ERV1|LTR12C	-	chr4	176846529	177192742	MSTRG.23180.1	-	176846529,176893867,177110619,177192068	176846712,176893905,177110664,177192742	0.934944
myometrial_cell_female_adult_34_years	chr4	81154201	81154222	81154221	-	High_confidence	5	5	16	0.594064	3.323231	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.937500
myometrial_cell_female_adult_34_years	chr1	155058725	155058762	155058761	+	High_confidence	3	3	12	0.445548	3.095795	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.916667
myometrial_cell_female_adult_34_years	chr11	307580	307581	307580	-	RAMPAGE_only	9	9	9	0.334161	3.169925	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	0.777778
myometrial_cell_female_adult_34_years	chr4	168138416	168138492	168138463	+	High_confidence	51	52	187	6.943125	5.974621	chr4	168138456	168139278	LINE|L1|L1P4	-	chr4	168138365	168187690	MSTRG.23119.2	+	168138365,168139485,168162527,168164197,168165246,168177739,168177889,168179216,168181682,168184558,168187365	168138519,168139580,168162641,168164288,168165326,168177793,168177983,168179312,168181741,168184681,168187690	0.967914
myometrial_cell_female_adult_34_years	chrX	71300058	71300460	71300459	+	RAMPAGE_only	45	51	428	15.891217	5.236144	chrX	71300434	71300519	SINE|Alu|AluSx	-	chrX	71291994	71301168	NONO|ENST00000490044.5	+	71291994,71294218,71296564,71296850,71297376,71297835,71298468,71298706,71299941	71293041,71294528,71296660,71297047,71297461,71297938,71298508,71298816,71301168	1.000000
myometrial_cell_female_adult_34_years	chr10	93431409	93431422	93431421	-	RAMPAGE_only	4	4	10	0.371290	2.646439	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	1.000000
myometrial_cell_female_adult_34_years	chr12	80552114	80552115	80552114	+	RAMPAGE_only	10	10	14	0.519806	3.392747	chr12	80552032	80552127	DNA|hAT-Charlie|MER5A	+	chr12	80444345	80680189	PTPRQ|NM_001145026.1	+	80444345,80444740,80445490,80457574,80459283,80460652,80468709,80472104,80484432,80493274,80494932,80495191,80495998,80496249,80506023,80506568,80510322,80534014,80534891,80539775,80541554,80542088,80542729,80546555,80549464,80588128,80605058,80610438,80613591,80616199,80619383,80620153,80622060,80632191,80634944,80648896,80649587,80652743,80657984,80669006,80669338,80670343,80673168,80678601,80678985	80444399,80444849,80445717,80457644,80459483,80460902,80468838,80472251,80484605,80493455,80495094,80495371,80496106,80496531,80506206,80506670,80510443,80534175,80535037,80539944,80541845,80542364,80542881,80546697,80549734,80588452,80605180,80610625,80613836,80616266,80619542,80620376,80622134,80632291,80635073,80648923,80649669,80652834,80658061,80669141,80669464,80670492,80673304,80678725,80680189	0.928571
myometrial_cell_female_adult_34_years	chr13	43055406	43055412	43055406	+	RAMPAGE_only	18	19	35	1.299515	4.631293	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.742857
myometrial_cell_female_adult_34_years	chr16	4355592	4355593	4355592	-	High_confidence	364	366	366	13.589219	5.137167	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.948087
myometrial_cell_female_adult_34_years	chr9	111036604	111036621	111036604	-	RAMPAGE_only	4	4	12	0.445548	3.095795	chr9	111036558	111036748	SINE|MIR|MIR3	-	chr9	110874176	111038043	MSTRG.29874.3	-	110874176,110941420,110972072,110973480,111005464,111009147,111011547,111035909,111036113,111037840	110875722,110942168,110972220,110973558,111005539,111009201,111011690,111036017,111036201,111038043	0.583333
myometrial_cell_female_adult_34_years	chr5	172954115	172954126	172954115	+	High_confidence	2	2	8	0.297032	2.807355	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172954089	172969718	MSTRG.24599.1	+	172954089,172959864,172968458,172969412	172954336,172960041,172968599,172969718	0.875000
myometrial_cell_female_adult_34_years	chr6	43013345	43013393	43013392	-	High_confidence	29	29	53	1.967838	4.862368	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
myometrial_cell_female_adult_34_years	chr16	8868168	8868215	8868194	-	High_confidence	4	4	16	0.594064	3.640224	chr16	8868119	8868156	SINE|MIR|MIRc	-	chr16	8858089	8868343	CARHSP1|ENST00000562843.5	-	8858089,8859170,8868048	8858472,8859335,8868343	0.500000
myometrial_cell_female_adult_34_years	chr2	36513735	36513736	36513735	+	High_confidence	10	11	15	0.556935	3.378783	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.533333
myometrial_cell_female_adult_34_years	chr1	19344364	19344401	19344388	-	RAMPAGE_only	4	4	19	0.705451	3.530493	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.947368
myometrial_cell_female_adult_34_years	chr1	20612599	20612600	20612599	+	RAMPAGE_only	5	5	7	0.259903	2.521641	chr1	20612288	20612679	LTR|ERV1|LTR7C	+	chr1	20589085	20618903	CDA|ENST00000461985.1	+	20589085,20604927,20618451	20589283,20605039,20618903	1.000000
myometrial_cell_female_adult_34_years	chr6	149857186	149857211	149857186	-	RAMPAGE_only	5	5	16	0.594064	3.452820	chr6	149857081	149857249	LTR|ERV1|LTR8	+	chr6	149818797	149864026	LRP11|ENST00000239367.6	-	149818797,149826263,149836084,149837337,149842982,149853002,149863407	149820703,149826359,149836297,149837463,149843124,149853160,149864026	0.937500
myometrial_cell_female_adult_34_years	chr17	2975658	2975667	2975660	+	RAMPAGE_only	6	11	39	1.448031	4.702565	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.897436
myometrial_cell_female_adult_34_years	chr7	99410089	99410113	99410112	+	High_confidence	5	5	11	0.408419	2.721928	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.818182
myometrial_cell_female_adult_34_years	chr3	125110569	125110605	125110597	-	RAMPAGE_only	7	8	26	0.965354	4.001629	chr3	125110543	125110700	DNA|hAT-Charlie|MER5A	-	chr3	125082635	125120854	SLC12A8|ENST00000430155.6	-	125082635,125088309,125091438,125092100,125107480,125110188,125118768,125120598	125084052,125088370,125091556,125092198,125108126,125110335,125118856,125120854	0.692308
myometrial_cell_female_adult_34_years	chr4	138054309	138054323	138054309	+	RAMPAGE_only	3	3	11	0.408419	2.845351	chr4	138054243	138054365	LTR|Gypsy|MamGypLTR2c	-	chr4	138089013	138178177	SLC7A11-AS1|ENST00000510767.5	+	138089013,138090833,138104506,138168716,138171532,138174471,138175660	138089306,138090980,138105791,138168818,138171706,138174607,138178177	1.000000
myometrial_cell_female_adult_34_years	chr7	101308293	101308325	101308299	+	High_confidence	15	15	74	2.747547	5.516423	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.905405
myometrial_cell_female_adult_34_years	chr12	52899198	52899205	52899198	-	RAMPAGE_only	6	7	15	0.556935	3.093069	chr12	52899032	52899335	SINE|Alu|AluY	+	chr12	52897215	52905044	KRT8|ENST00000550170.5	-	52897215,52898460,52898678,52899774,52900587,52901863,52904657	52897618,52898519,52898899,52900065,52901219,52902072,52905044	0.933333
myometrial_cell_female_adult_34_years	chr4	177192596	177192637	177192596	-	High_confidence	3	5	19	0.705451	3.683542	chr4	177192339	177193759	LTR|ERV1|LTR12C	-	chr4	176846529	177192742	MSTRG.23180.1	-	176846529,176893867,177110619,177192068	176846712,176893905,177110664,177192742	0.842105
myometrial_cell_female_adult_34_years	chr5	149404214	149404233	149404214	-	High_confidence	6	6	12	0.445548	3.095795	chr5	149404176	149404312	LINE|CR1|X7C_LINE	+	chr5	149374266	149404202	IL17B|NM_001317987.1	-	149374266,149376735,149404107	149374600,149377025,149404202	0.833333
myometrial_cell_female_adult_34_years	chr1	235589035	235589075	235589047	-	High_confidence	44	47	250	9.282253	6.526486	chr1	235589032	235589593	LTR|ERVL|LTR18B	+	chr1	235551753	235588959	GNG4|ENST00000484517.2	-	235551753,235583739,235588868	235552237,235583848,235588959	0.672000
myometrial_cell_female_adult_34_years	chr1	184483213	184483222	184483213	+	RAMPAGE_only	3	3	8	0.297032	2.500000	chr1	184483121	184483214	LINE|CR1|L3	-	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	1.000000
myometrial_cell_female_adult_34_years	chr2	151337619	151337644	151337623	-	RAMPAGE_only	5	5	21	0.779709	3.584184	chr2	151337407	151337662	SINE|Alu|AluSq2	+	chr2	151270464	151292863	MSTRG.17542.1	-	151270464,151271625,151275483,151275757,151278827,151281947,151282867,151289592,151292851	151270875,151271732,151275670,151275864,151278990,151282043,151282954,151289791,151292863	0.904762
myometrial_cell_female_adult_34_years	chr15	78245687	78245688	78245687	-	High_confidence	21	21	21	0.779709	3.653757	chr15	78245271	78246702	LTR|ERV1|LTR12C	-	chr15	78170913	78245688	ACSBG1|ENST00000560817.5	-	78170913,78173592,78174384,78178613,78179549,78180754,78181968,78182465,78182704,78245268	78171529,78173839,78174524,78178831,78179780,78180936,78182145,78182615,78182785,78245688	0.904762
myometrial_cell_female_adult_34_years	chr1	32221712	32221749	32221748	+	High_confidence	8	8	25	0.928225	4.136842	chr1	32221596	32221823	SINE|MIR|MIRb	-	chr1	32221621	32231604	MSTRG.736.1	+	32221621,32222357,32222537,32224033,32224409,32226170,32226402,32228498,32228726,32229134,32230926,32231114	32222032,32222444,32222630,32224121,32224475,32226320,32226530,32228609,32228816,32229208,32231019,32231604	0.960000
myometrial_cell_female_adult_34_years	chr1	159920334	159920432	159920334	-	RAMPAGE_only	13	13	86	3.193095	5.226529	chr1	159920065	159920288	LINE|CR1|L3b	-	chr1	159918106	159923717	TAGLN2|NM_001277224.1	-	159918106,159919273,159919660,159920329,159923435	159918941,159919376,159919835,159920537,159923717	1.000000
myometrial_cell_female_adult_34_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	25	25	25	0.928225	3.349275	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
myometrial_cell_female_adult_34_years	chr10	30999506	30999550	30999519	-	RAMPAGE_only	15	15	32	1.188128	4.389365	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	31031937	ZNF438|NM_001143766.1	-	30844633,30848530,30876997,30908932,30923286,30941574,30984368,31031832	30845573,30850367,30877065,30909015,30923415,30941651,30984426,31031937	0.500000
myometrial_cell_female_adult_34_years	chr10	43793766	43793833	43793766	-	High_confidence	8	8	46	1.707935	4.217563	chr10	43793704	43793845	LINE|L1|L1ME3E	-	chr10	43785423	43794048	MSTRG.3472.1	-	43785423,43793976	43786184,43794048	0.804348
myometrial_cell_female_adult_34_years	chr4	151687170	151687171	151687170	-	High_confidence	4	4	7	0.259903	2.521641	chr4	151687082	151687177	LINE|L2|L2b	+	chr4	151670943	151687083	GATB|ENST00000507592.5	-	151670943,151672761,151679812,151686907	151671302,151672896,151679891,151687083	1.000000
myometrial_cell_female_adult_34_years	chr9	39809803	39809859	39809858	-	High_confidence	12	15	50	1.856451	4.175336	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.840000
myometrial_cell_female_adult_34_years	chr3	139344535	139344548	139344547	+	High_confidence	206	206	516	19.158570	5.806254	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.974806
myometrial_cell_female_adult_34_years	chr10	78977917	78977924	78977923	-	RAMPAGE_only	5	5	12	0.445548	3.584963	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78962394	ZMIZ1-AS1|ENST00000428862.5	-	78943327,78945911,78960504,78961253	78944747,78945989,78960716,78962394	0.833333
myometrial_cell_female_adult_34_years	chr5	64939958	64939978	64939977	+	RAMPAGE_only	8	9	19	0.705451	4.037401	chr5	64934100	64940576	LINE|L1|L1PA7	-	chr5	64884155	65018591	CWC27|ENST00000545000.1	+	64884155,64885442,64971702,64977134,65018158	64884285,64885546,64971812,64977238,65018591	0.947368
myometrial_cell_female_adult_34_years	chr11	12249181	12249220	12249200	+	RAMPAGE_only	4	4	17	0.631193	3.155639	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.941176
myometrial_cell_female_adult_34_years	chr3	159231693	159231711	159231703	+	RAMPAGE_only	23	25	77	2.858934	5.718129	chr3	159231501	159232447	LINE|L1|L1P1	-	chr3	159069854	159764511	IQCJ-SCHIP1|ENST00000639979.1	+	159069854,159245842,159252726,159262547,159764442	159070077,159245907,159252807,159262683,159764511	0.532468
myometrial_cell_female_adult_34_years	chr5	93504673	93504674	93504673	-	RAMPAGE_only	12	13	13	0.482677	3.084963	chr5	93504513	93504869	LTR|ERVL-MaLR|THE1A	-	chr5	93411017	93438737	NR2F1-AS1|ENST00000606188.1	-	93411017,93438702	93411509,93438737	0.846154
myometrial_cell_female_adult_34_years	chr19	20423688	20423704	20423703	-	RAMPAGE_only	17	21	44	1.633677	4.280470	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.750000
myometrial_cell_female_adult_34_years	chr20	44532569	44532570	44532569	+	High_confidence	8	8	11	0.408419	3.277613	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	1.000000
myometrial_cell_female_adult_34_years	chrX	283506	283507	283506	+	RAMPAGE_only	7	8	11	0.408419	3.095795	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	281461	303353	PLCXD1|ENST00000381663.8	+	281461,284166,288732,290647,291498,293034,299096,302836	281684,284314,288869,290776,291654,293218,299465,303353	1.000000
myometrial_cell_female_adult_34_years	chr4	168138000	168138015	168138000	+	High_confidence	2	2	8	0.297032	2.807355	chr4	168137959	168138260	SINE|Alu|AluSc8	-	chr4	168138365	168187690	MSTRG.23119.2	+	168138365,168139485,168162527,168164197,168165246,168177739,168177889,168179216,168181682,168184558,168187365	168138519,168139580,168162641,168164288,168165326,168177793,168177983,168179312,168181741,168184681,168187690	0.875000
myometrial_cell_female_adult_34_years	chr11	17352281	17352310	17352281	+	High_confidence	5	5	14	0.519806	3.807355	chr11	17352168	17352474	SINE|Alu|AluY	-	chr11	17352494	17352799	MSTRG.4650.1	+	17352494	17352799	0.714286
myometrial_cell_female_adult_34_years	chr13	23867112	23867121	23867120	-	RAMPAGE_only	48	48	97	3.601514	5.727339	chr13	23866458	23867698	LINE|L2|L2a	+	chr13	23730188	23889419	MIPEP|ENST00000382172.3	-	23730188,23756544,23760095,23805949,23809849,23836239,23837551,23839648,23841334,23858859,23862301,23864140,23869291,23870012,23874845,23879267,23881698,23886332,23889131	23730445,23756618,23760217,23806069,23809924,23836349,23837756,23839726,23841488,23858912,23862362,23864189,23869448,23870195,23874909,23879354,23881787,23886506,23889419	0.948454
myometrial_cell_female_adult_34_years	chr22	18149863	18149871	18149863	+	High_confidence	20	20	60	2.227741	4.065688	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.983333
myometrial_cell_female_adult_34_years	chr6	5498480	5498517	5498487	+	RAMPAGE_only	116	116	288	10.693156	5.535087	chr6	5498468	5498580	LINE|L2|L2b	+	chr6	5261525	5771580	FARS2|ENST00000274680.8	+	5261525,5368549,5404541,5431040,5545179,5613168,5771290	5261660,5369182,5404701,5431172,5545340,5613320,5771580	0.979167
myometrial_cell_female_adult_34_years	chr15	85330237	85330323	85330237	-	RAMPAGE_only	75	80	237	8.799576	6.660470	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.691983
myometrial_cell_female_adult_34_years	chr20	18794063	18794078	18794077	+	High_confidence	16	16	33	1.225257	4.271371	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
myometrial_cell_female_adult_34_years	chr10	97497829	97497896	97497895	+	High_confidence	4	5	20	0.742580	3.146439	chr10	97497897	97498050	SINE|MIR|MIRc	+	chr10	97498867	97571209	UBTD1|ENST00000370664.3	+	97498867,97567913,97570137	97499273,97568141,97571209	0.650000
myometrial_cell_female_adult_34_years	chr16	46690249	46690259	46690249	+	High_confidence	2	2	6	0.222774	2.584963	chr16	46690233	46690424	LINE|L2|L2b	-	chr16	46690785	46698385	ORC6|ENST00000566860.1	+	46690785,46692381,46693092,46695561,46696016,46697457	46691120,46692545,46693182,46695674,46696085,46698385	0.500000
myometrial_cell_female_adult_34_years	chr12	91179368	91179384	91179383	-	High_confidence	3	3	9	0.334161	3.000000	chr12	91179305	91179397	SINE|MIR|MIRb	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.777778
myometrial_cell_female_adult_34_years	chr4	99906528	99906557	99906556	-	High_confidence	4	4	14	0.519806	3.085055	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.928571
myometrial_cell_female_adult_34_years	chr22	27920133	27920155	27920133	-	High_confidence	4	4	14	0.519806	3.807355	chr22	27919974	27920411	LINE|L2|L2b	-	chr22	27860195	27920134	PITPNB|ENST00000415296.5	-	27860195,27873737,27894554,27896551,27897129,27897800,27910963,27914316,27919810	27860241,27873815,27894638,27896626,27897137,27897892,27911109,27914347,27920134	0.857143
myometrial_cell_female_adult_34_years	chr2	96637954	96637973	96637972	-	High_confidence	5	5	10	0.371290	2.721928	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.800000
myometrial_cell_female_adult_34_years	chr10	100361928	100362359	100361928	+	RAMPAGE_only	25	25	425	15.779830	6.724892	chr10	100361757	100361963	LTR|ERVL-MaLR|MLT1L	-	chr10	100347123	100364834	SCD|ENST00000370355.2	+	100347123,100348063,100352365,100354426,100356531,100360733	100347531,100348346,100352496,100354632,100356764,100364834	1.000000
myometrial_cell_female_adult_34_years	chr7	134432378	134432436	134432435	-	High_confidence	65	72	377	13.997638	5.257742	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.973475
myometrial_cell_female_adult_34_years	chr20	50131139	50131151	50131139	-	High_confidence	3	3	8	0.297032	2.500000	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	1.000000
myometrial_cell_female_adult_34_years	chr4	8436087	8436113	8436102	+	High_confidence	3	3	14	0.519806	2.835238	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8436139	8439301	TRMT44|ENST00000532937.1	+	8436139,8438791	8436399,8439301	0.857143
myometrial_cell_female_adult_34_years	chr19	44626504	44626569	44626557	+	RAMPAGE_only	14	16	46	1.707935	3.799644	chr19	44626362	44626615	LINE|L2|L2b	-	chr19	44613629	44636781	IGSF23|ENST00000402988.5	+	44613629,44623706,44627419,44635400,44636418	44613770,44623972,44627573,44635465,44636781	1.000000
myometrial_cell_female_adult_34_years	chr20	52105665	52105666	52105665	-	High_confidence	5	7	7	0.259903	2.521641	chr20	52105641	52105800	DNA|hAT-Charlie|MER5A1	-	chr20	52084010	52105644	ZFP64|ENST00000371523.8	-	52084010,52088391,52097372,52098437,52105131	52085266,52088643,52097435,52098587,52105644	1.000000
myometrial_cell_female_adult_34_years	chr11	9775633	9775666	9775633	+	High_confidence	78	78	329	12.215445	6.497992	chr11	9775466	9776058	LTR|ERVL|MER21C	+	chr11	9775652	9808928	MSTRG.4573.6	+	9775652,9807847	9775765,9808928	0.814590
myometrial_cell_female_adult_34_years	chr11	3380960	3380961	3380960	+	High_confidence	17	18	18	0.668322	3.734522	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.722222
myometrial_cell_female_adult_34_years	chr6	117442523	117442524	117442523	-	RAMPAGE_only	20	21	25	0.928225	3.490602	chr6	117442358	117442707	LTR|ERVL-MaLR|THE1B	-	chr6	117288299	117425855	ROS1|ENST00000368508.7	-	117288299,117300973,117308793,117310080,117311019,117317142,117318187,117319867,117321258,117324331,117326223,117329328,117337171,117341134,117341399,117342399,117344059,117352989,117356628,117357803,117359808,117360341,117362602,117365059,117365580,117366075,117379058,117383316,117385682,117386888,117387779,117389349,117393223,117394161,117394615,117396187,117396914,117403138,117404279,117409581,117416257,117418461,117425533	117288802,117301137,117308928,117310281,117311117,117317272,117318252,117320030,117321394,117324415,117326414,117329446,117337340,117341311,117341632,117342544,117344262,117353169,117356915,117358009,117360011,117360405,117362865,117365204,117365741,117366290,117379159,117383508,117385861,117386999,117388034,117389846,117393321,117394346,117394738,117396264,117397116,117403277,117404428,117409642,117416317,117418506,117425855	0.880000
myometrial_cell_female_adult_34_years	chr10	133369963	133370006	133369963	-	RAMPAGE_only	3	3	12	0.445548	3.095795	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.916667
myometrial_cell_female_adult_34_years	chr22	37849317	37849333	37849317	-	High_confidence	51	56	186	6.905996	5.833800	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.989247
myometrial_cell_female_adult_34_years	chr12	10363964	10363974	10363964	+	High_confidence	16	16	31	1.150999	4.478232	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.838710
myometrial_cell_female_adult_34_years	chr1	25820151	25820193	25820192	+	High_confidence	4	4	17	0.631193	3.625000	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.588235
myometrial_cell_female_adult_34_years	chr22	42721262	42721273	42721271	-	High_confidence	6	10	21	0.779709	3.195296	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692121	42721265	MSTRG.20153.4	-	42692121,42695490,42721164	42693997,42695631,42721265	0.809524
myometrial_cell_female_adult_34_years	chr3	86991969	86991988	86991984	-	High_confidence	3	3	11	0.408419	2.921928	chr3	86991932	86992232	SINE|Alu|AluJr	-	chr3	86937968	86991123	VGLL3|NM_001320494.1	-	86937968,86968589,86978525,86990617	86947067,86969123,86978643,86991123	0.909091
myometrial_cell_female_adult_34_years	chr2	6918647	6918680	6918666	-	High_confidence	7	7	21	0.779709	4.011365	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6916850	6918663	RNF144A-AS1|ENST00000439208.1	-	6916850,6918280	6917224,6918663	0.857143
myometrial_cell_female_adult_34_years	chr11	62600186	62600210	62600186	-	High_confidence	3	3	7	0.259903	2.584963	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.714286
myometrial_cell_female_adult_34_years	chr2	231072213	231072219	231072213	+	RAMPAGE_only	2	3	8	0.297032	2.750000	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	1.000000
myometrial_cell_female_adult_34_years	chr21	29077476	29077497	29077486	+	High_confidence	13	13	32	1.188128	4.053236	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077474	29091576	MAP3K7CL|ENST00000419845.5	+	29077474,29080551,29085812,29091500	29077713,29080708,29085917,29091576	0.781250
myometrial_cell_female_adult_34_years	chr6	26474343	26474346	26474345	+	RAMPAGE_only	8	16	23	0.853967	4.349649	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.695652
myometrial_cell_female_adult_34_years	chr12	9065167	9065174	9065167	+	High_confidence	3	3	8	0.297032	2.807355	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.625000
myometrial_cell_female_adult_34_years	chr12	79455504	79455528	79455527	-	High_confidence	5	6	13	0.482677	3.251629	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.923077
myometrial_cell_female_adult_34_years	chr5	151158498	151158499	151158498	-	High_confidence	5	5	8	0.297032	2.807355	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.875000
myometrial_cell_female_adult_34_years	chr9	129698722	129698744	129698743	+	RAMPAGE_only	9	10	39	1.448031	4.470673	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	1.000000
myometrial_cell_female_adult_34_years	chr1	112956789	112956805	112956793	+	High_confidence	4	4	9	0.334161	3.000000	chr1	112956705	112956908	SINE|MIR|MIR	+	chr1	112956414	112964072	SLC16A1-AS1|NR_103743.1	+	112956414,112960476,112963971	112957722,112960575,112964072	0.555556
myometrial_cell_female_adult_34_years	chr16	66408519	66408564	66408519	+	High_confidence	3	4	16	0.594064	3.750000	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66412135	LINC00920|ENST00000499966.1	+	66408523,66410279	66408814,66412135	0.812500
myometrial_cell_female_adult_34_years	chr3	37163366	37163367	37163366	-	RAMPAGE_only	8	8	12	0.445548	2.845351	chr3	37163292	37163695	LTR|ERVL-MaLR|MLT1J2	+	chr3	37052889	37174564	LRRFIP2|ENST00000336686.8	-	37052889,37054410,37055085,37058789,37063741,37065809,37066223,37072789,37075023,37083635,37091466,37094791,37096615,37102923,37105454,37108072,37108636,37109526,37109652,37110990,37112914,37115053,37121491,37121634,37127629,37129062,37148893,37174538	37053961,37054515,37055165,37058910,37063791,37065942,37066325,37072882,37075116,37083806,37091538,37094908,37096660,37103013,37105523,37108129,37108684,37109571,37109703,37111065,37112980,37115095,37121536,37121691,37127680,37129149,37149038,37174564	0.750000
myometrial_cell_female_adult_34_years	chr8	11795569	11795570	11795569	+	High_confidence	73	84	90	3.341611	4.583709	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.966667
myometrial_cell_female_adult_34_years	chrX	10589962	10589963	10589962	-	High_confidence	17	17	18	0.668322	3.572469	chrX	10589852	10590340	LTR|ERV1|LTR2B	-	chrX	10445555	10589909	MID1|ENST00000380780.5	-	10445555,10454869,10459645,10469696,10474622,10482479,10495583,10523091,10566887,10589586	10449716,10455077,10459807,10469840,10474750,10482628,10495691,10523187,10567603,10589909	0.611111
myometrial_cell_female_adult_34_years	chr9	129489111	129489145	129489125	+	High_confidence	14	19	40	1.485160	4.807009	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.725000
myometrial_cell_female_adult_34_years	chr19	55172877	55172893	55172892	+	RAMPAGE_only	4	4	10	0.371290	2.921928	chr19	55172843	55172926	SINE|MIR|MIRc	-	chr19	55158938	55177540	AC010327.3|ENST00000591665.1	+	55158938,55159421,55161045,55162751,55177083	55159338,55159988,55161214,55162801,55177540	0.900000
myometrial_cell_female_adult_34_years	chr2	43137659	43137666	43137659	-	RAMPAGE_only	3	6	12	0.445548	3.459432	chr2	43137289	43137984	LINE|L2|L2a	+	chr2	43097745	43102691	LINC02580|ENST00000434020.1	-	43097745,43102034	43098040,43102691	0.666667
myometrial_cell_female_adult_34_years	chr6	2990740	2990755	2990748	-	RAMPAGE_only	17	20	54	2.004967	4.145084	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.962963
myometrial_cell_female_adult_34_years	chr8	143039246	143039267	143039246	+	High_confidence	12	18	64	2.376257	4.937904	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	1.000000
myometrial_cell_female_adult_34_years	chr16	11587465	11587489	11587465	-	High_confidence	16	17	46	1.707935	3.737932	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
myometrial_cell_female_adult_34_years	chr17	47067498	47067518	47067498	-	High_confidence	317	344	1160	43.069654	6.192397	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.882759
myometrial_cell_female_adult_34_years	chr7	2242922	2242923	2242922	+	High_confidence	113	113	113	4.195578	6.003536	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
myometrial_cell_female_adult_34_years	chr4_GL000008v2_random	170347	170350	170347	-	RAMPAGE_only	19	19	31	1.150999	4.323231	chr4_GL000008v2_random	170280	170685	LTR|ERV1|MER61C	+	chr4_GL000008v2_random	161986	178171	ANKRD20A12P|NR_046228.1	-	161986,163784,164602,175824,177526	162439,163998,164884,175974,178171	0.967742
myometrial_cell_female_adult_34_years	chr11	74593130	74593151	74593130	+	High_confidence	3	5	9	0.334161	3.169925	chr11	74593085	74593234	SINE|MIR|MIRc	+	chr11	74592643	74618770	POLD3|ENST00000530511.5	+	74592643,74594060,74604691,74611498,74612877,74618536	74592931,74594116,74604794,74611538,74613010,74618770	0.666667
myometrial_cell_female_adult_34_years	chr3	11225885	11225919	11225885	-	High_confidence	33	36	170	6.311932	6.232833	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.717647
myometrial_cell_female_adult_34_years	chr8	143558019	143558020	143558019	+	High_confidence	8	8	8	0.297032	3.000000	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.750000
myometrial_cell_female_adult_34_years	chr16	10993077	10993078	10993077	+	RAMPAGE_only	9	9	10	0.371290	3.169925	chr16	10993109	10993393	SINE|Alu|AluSz	+	chr16	10972480	11024919	CLEC16A|ENST00000494853.1	+	10972480,10972937,10977224,10979328,10982877,11003073,11020192,11024820	10972559,10973061,10977399,10979382,10982991,11003305,11020325,11024919	0.600000
myometrial_cell_female_adult_34_years	chr1	31373705	31373733	31373705	-	High_confidence	10	10	20	0.742580	3.616349	chr1	31373523	31373667	SINE|MIR|MIRb	-	chr1	31365252	31373288	FABP3|NM_001320996.1	-	31365252,31367392,31369384,31372941	31365939,31367494,31369590,31373288	0.850000
myometrial_cell_female_adult_34_years	chr17	4143196	4143215	4143199	+	High_confidence	154	166	387	14.368928	5.976361	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.976744
myometrial_cell_female_adult_34_years	chr6	132686744	132686753	132686744	-	High_confidence	13	14	33	1.225257	3.551633	chr6	132686518	132687118	LINE|L1|HAL1	+	chr6	132681712	132687416	MSTRG.25987.2	-	132681712,132684334,132685254,132686598	132683322,132684505,132685403,132687416	1.000000
myometrial_cell_female_adult_34_years	chr17	21551132	21551172	21551148	-	High_confidence	15	15	51	1.893580	4.881328	chr17	21551016	21551106	DNA|hAT-Charlie|Charlie16a	-	chr17	21528309	21551678	C17orf51|NM_001113434.4	-	21528309,21550995	21535538,21551678	0.941176
myometrial_cell_female_adult_34_years	chr3	28347646	28347681	28347653	-	High_confidence	9	9	20	0.742580	3.932138	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.750000
myometrial_cell_female_adult_34_years	chr10	104254340	104254358	104254340	+	High_confidence	2	2	7	0.259903	2.807355	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254193	104267464	GSTO1|NM_001191003.1	+	104254193,104255162,104259575,104262978,104266083,104267251	104254499,104255271,104259798,104263077,104266190,104267464	1.000000
myometrial_cell_female_adult_34_years	chr2	55618850	55618851	55618850	-	High_confidence	5	5	8	0.297032	3.000000	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.750000
myometrial_cell_female_adult_34_years	chr8	18666148	18666165	18666164	-	High_confidence	10	10	17	0.631193	3.625000	chr8	18666060	18666349	SINE|Alu|AluSx	-	chr8	18530710	18666153	MSTRG.28051.6	-	18530710,18556208,18572527,18575127,18600363,18632612,18655641,18666059	18535958,18556352,18572672,18575285,18600434,18632806,18655685,18666153	0.941176
myometrial_cell_female_adult_34_years	chr3	197299316	197299320	197299316	-	High_confidence	4	4	10	0.371290	2.947703	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.900000
myometrial_cell_female_adult_34_years	chr20	45833293	45833308	45833293	-	High_confidence	4	4	11	0.408419	3.121928	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.909091
myometrial_cell_female_adult_34_years	chr13	109272202	109272203	109272202	+	RAMPAGE_only	339	348	436	16.188249	6.845113	chr13	109271794	109272374	LTR|ERV1|LTR9	+	chr13	109269633	109273838	AL161431.1|ENST00000618966.1	+	109269633	109273838	0.814220
myometrial_cell_female_adult_34_years	chr8	39082992	39083066	39083065	+	RAMPAGE_only	7	7	68	2.524773	5.096521	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.764706
myometrial_cell_female_adult_34_years	chr11	64321719	64321720	64321719	-	High_confidence	15	15	15	0.556935	3.773557	chr11	64321600	64321732	SINE|MIR|MIR	+	chr11	64319746	64321640	MSTRG.5103.1	-	64319746,64320660,64320864,64321006,64321585	64319868,64320792,64320903,64321068,64321640	0.666667
myometrial_cell_female_adult_34_years	chr7	103353922	103353957	103353930	+	High_confidence	4	5	10	0.371290	2.721928	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103354855	103368208	PSMC2|ENST00000640277.1	+	103354855,103354867,103355693,103361956,103362685,103363343,103364142,103366075,103367412,103367712,103367896	103354864,103354949,103355793,103362088,103362758,103363439,103364307,103366163,103367615,103367809,103368208	1.000000
myometrial_cell_female_adult_34_years	chr18	80147920	80147930	80147929	+	High_confidence	9	9	27	1.002483	4.384517	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80147935	80149256	MSTRG.14651.3	+	80147935,80148553	80148254,80149256	0.925926
myometrial_cell_female_adult_34_years	chr5	32403136	32403163	32403136	-	RAMPAGE_only	2	2	13	0.482677	3.251629	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.923077
myometrial_cell_female_adult_34_years	chr1	112850264	112850313	112850264	+	High_confidence	37	42	181	6.720351	5.083567	chr1	112850184	112850373	SINE|MIR|MIR	+	chr1	112850075	112877867	AL390729.1|ENST00000422022.1	+	112850075,112877729	112850427,112877867	0.983425
myometrial_cell_female_adult_34_years	chr17	40456504	40457166	40456971	+	RAMPAGE_only	95	98	1754	65.124288	6.415608	chr17	40456908	40456980	LINE|L2|L2b	-	chr17	40443460	40457731	IGFBP4|ENST00000269593.4	+	40443460,40452984,40453927,40456448	40444084,40453142,40454062,40457731	0.999430
myometrial_cell_female_adult_34_years	chr2	199955961	199955987	199955964	+	High_confidence	2	3	10	0.371290	2.641604	chr2	199955996	199956125	LINE|L1|L1MDb	+	chr2	199955820	200008540	MAIP1|ENST00000435773.2	+	199955820,199959267,199959753,200005742,200008465	199956248,199959339,199959880,200005777,200008540	0.800000
myometrial_cell_female_adult_34_years	chr7	107580245	107580267	107580264	+	High_confidence	1632	1635	7985	296.475165	7.369542	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.910833
myometrial_cell_female_adult_34_years	chr2	73736756	73736757	73736756	-	High_confidence	19	19	19	0.705451	3.300559	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73729889	73737335	MSTRG.16985.5	-	73729889,73730559,73732162,73732583,73734428,73737301	73730029,73730736,73732285,73732704,73734591,73737335	1.000000
myometrial_cell_female_adult_34_years	chr18	12977033	12977053	12977033	+	High_confidence	4	4	13	0.482677	3.584963	chr18	12976990	12977065	DNA|hAT-Charlie|MER5A1	-	chr18	12976287	12987531	SEH1L|ENST00000590843.1	+	12976287,12982517,12984039,12985239	12978892,12982675,12984190,12987531	0.923077
myometrial_cell_female_adult_34_years	chr7	56056411	56056412	56056411	+	High_confidence	5	6	6	0.222774	2.584963	chr7	56056444	56056752	SINE|Alu|AluSq2	+	chr7	56056311	56059010	CCT6A|ENST00000482776.1	+	56056311,56057992,56058361,56058619	56056414,56058103,56058521,56059010	0.500000
myometrial_cell_female_adult_34_years	chr3	108165459	108165474	108165473	-	RAMPAGE_only	4	5	9	0.334161	3.000000	chr3	108165378	108165542	DNA|hAT-Ac|OldhAT1	+	chr3	108160811	108222570	IFT57|NM_018010.3	-	108160811,108163662,108165430,108166853,108167792,108191520,108206627,108213930,108218534,108219409,108222110	108162655,108163729,108165493,108166985,108167864,108191643,108206696,108214021,108218653,108219572,108222570	0.888889
myometrial_cell_female_adult_34_years	chrX	51819345	51819346	51819345	+	RAMPAGE_only	7	7	7	0.259903	2.807355	chrX	51819123	51819506	LTR|ERVL|LTR52	+	chrX	51803076	51896474	MSTRG.30722.2	+	51803076,51819351,51894268,51895052,51896152,51896408	51803117,51819408,51894349,51895760,51896322,51896474	1.000000
myometrial_cell_female_adult_34_years	chr5	10237570	10237586	10237570	+	RAMPAGE_only	4	4	9	0.334161	3.169925	chr5	10237388	10237750	LTR|ERVL-MaLR|THE1B	+	chr5	10249920	10266412	CCT5|NM_001306153.1	+	10249920,10254144,10254673,10255954,10258110,10258385,10260791,10261559,10262480,10263133,10264655	10250045,10254205,10254838,10256153,10258303,10258535,10260911,10261745,10262618,10263314,10266412	1.000000
myometrial_cell_female_adult_34_years	chr11	72113730	72113732	72113730	-	High_confidence	6	9	10	0.371290	2.947703	chr11	72113605	72113746	SINE|MIR|MIRc	+	chr11	72109586	72112780	ANAPC15|ENST00000227618.8	-	72109586,72110087,72110543,72111156,72111411,72112649	72109928,72110225,72110603,72111286,72111496,72112780	0.800000
myometrial_cell_female_adult_34_years	chr3	33864030	33864119	33864068	+	RAMPAGE_only	5	6	54	2.004967	3.907213	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	1.000000
myometrial_cell_female_adult_34_years	chr3	157533600	157533641	157533600	-	High_confidence	1877	1962	3327	123.528225	6.901487	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157460214	157533606	VEPH1|ENST00000487753.5	-	157460214,157470313,157495211,157533512	157460355,157470529,157495506,157533606	0.932071
myometrial_cell_female_adult_34_years	chr6	127330853	127330890	127330853	-	High_confidence	3	3	14	0.519806	3.392747	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.642857
myometrial_cell_female_adult_34_years	chr7	48000206	48000235	48000229	-	High_confidence	4	6	16	0.594064	3.500000	chr7	48000133	48000438	SINE|Alu|AluSx	-	chr7	47987147	48000181	SUN3|ENST00000473723.5	-	47987147,47988787,47991009,47994314,47996030,48000127	47987449,47988880,47991045,47994482,47996146,48000181	0.875000
myometrial_cell_female_adult_34_years	chr3	131109386	131109428	131109427	+	High_confidence	9	9	22	0.816838	4.021928	chr3	131109170	131109680	LTR|ERV1|MER67A	-	chr3	131109399	131155067	NEK11|ENST00000510926.1	+	131109399,131109802,131132744,131133829,131152387,131152630,131155035	131109503,131109921,131132809,131133956,131152537,131152709,131155067	0.500000
myometrial_cell_female_adult_34_years	chr21	26405942	26405950	26405949	+	RAMPAGE_only	4	4	8	0.297032	2.500000	chr21	26405595	26406023	LTR|ERVL|LTR16	+	chr21	26390135	26471698	AP001596.1|ENST00000421771.1	+	26390135,26470750	26390265,26471698	0.500000
myometrial_cell_female_adult_34_years	chr7	154928480	154928504	154928503	+	High_confidence	29	30	57	2.116354	4.983645	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.912281
myometrial_cell_female_adult_34_years	chrX	7147267	7147276	7147267	+	High_confidence	4	4	10	0.371290	2.725481	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.700000
myometrial_cell_female_adult_34_years	chr3	157487448	157487449	157487448	-	RAMPAGE_only	61	73	80	2.970321	4.577216	chr3	157486755	157488128	LINE|L1|L1ME3C	+	chr3	157460094	157489356	VEPH1|ENST00000482434.1	-	157460094,157470313,157489054	157460355,157470529,157489356	0.825000
myometrial_cell_female_adult_34_years	chr11	123060156	123060256	123060250	-	High_confidence	23	23	301	11.175833	5.599554	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.657807
myometrial_cell_female_adult_34_years	chr3	11604434	11604456	11604455	-	High_confidence	3	3	10	0.371290	3.121928	chr3	11604225	11604413	SINE|MIR|MIR3	-	chr3	11556066	11604581	VGLL4|NM_001284391.1	-	11556066,11559331,11564796,11601832,11604323	11558827,11559455,11565019,11602022,11604581	1.000000
myometrial_cell_female_adult_34_years	chr8	32927960	32927977	32927967	+	RAMPAGE_only	13	13	47	1.745064	4.805746	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.851064
myometrial_cell_female_adult_34_years	chr3	135965673	135965749	135965723	+	High_confidence	26	41	204	7.574319	6.161724	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.950980
myometrial_cell_female_adult_34_years	chr3	159865513	159865560	159865547	+	RAMPAGE_only	4	5	15	0.556935	2.835238	chr3	159865595	159865648	LINE|L2|L2b	+	chr3	159852991	159894723	SCHIP1|ENST00000482885.1	+	159852991,159866162,159886206,159892096	159853457,159866281,159888943,159894723	0.533333
myometrial_cell_female_adult_34_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	21	21	21	0.779709	4.106603	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
myometrial_cell_female_adult_34_years	chr13	24580612	24580623	24580612	+	High_confidence	2	4	7	0.259903	2.807355	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	1.000000
myometrial_cell_female_adult_34_years	chr14	102234561	102234563	102234562	-	High_confidence	3	7	8	0.297032	2.807355	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102231745	102234153	MOK|ENST00000520046.1	-	102231745,102232534,102233687	102231821,102232671,102234153	0.500000
myometrial_cell_female_adult_34_years	chrX	16712889	16712959	16712889	-	High_confidence	5	5	31	1.150999	4.171465	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	1.000000
myometrial_cell_female_adult_34_years	chr11	112227198	112227225	112227224	+	High_confidence	3	4	9	0.334161	2.725481	chr11	112227196	112227258	SINE|MIR|MIR	+	chr11	112226431	112233810	PTS|ENST00000525803.1	+	112226431,112228593,112233162,112233431	112226526,112228673,112233233,112233810	0.888889
myometrial_cell_female_adult_34_years	chr19	5680196	5680249	5680240	-	High_confidence	27	27	138	5.123804	5.918105	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.985507
myometrial_cell_female_adult_34_years	chr11	61811820	61811821	61811820	-	High_confidence	14	14	14	0.519806	2.985228	chr11	61811607	61811887	SINE|Alu|AluSx1	-	chr11	61803425	61810885	FADS1|ENST00000539999.1	-	61803425,61803669,61804684,61806663,61810750	61803459,61803767,61804761,61806724,61810885	0.928571
myometrial_cell_female_adult_34_years	chr11	943152	943170	943152	+	RAMPAGE_only	2	2	8	0.297032	2.807355	chr11	943120	943579	LTR|ERV1|LTR2	-	chr11	925899	1010919	AP2A2|ENST00000528815.5	+	925899,959436,970168,972061,977094,981197,984644,985431,986784,988551,992502,993283,993753,994071,1003721,1006527,1008011,1009099,1009327,1009682,1010547	926088,959505,970311,972255,977224,981299,984753,985582,986953,988689,992685,993381,993985,994245,1003804,1006617,1008135,1009216,1009397,1009817,1010919	0.500000
myometrial_cell_female_adult_34_years	chr15	34588450	34588453	34588452	-	High_confidence	21	40	52	1.930709	4.648367	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.730769
myometrial_cell_female_adult_34_years	chr15	75626304	75626305	75626304	-	High_confidence	8	9	12	0.445548	3.022055	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
myometrial_cell_female_adult_34_years	chr13	110179297	110179325	110179297	-	RAMPAGE_only	6	6	21	0.779709	4.221928	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	0.952381
myometrial_cell_female_adult_34_years	chr3	139117188	139117218	139117212	+	RAMPAGE_only	11	11	32	1.188128	4.413716	chr3	139117000	139117550	DNA|TcMar-Tigger|Tigger3	+	chr3	139005805	139357046	MRPS22|ENST00000495075.5	+	139005805,139180289,139343955,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139006095,139180360,139344198,139347044,139348324,139350322,139351060,139352792,139355790,139357046	0.781250
myometrial_cell_female_adult_34_years	chr4	89681375	89681382	89681375	+	High_confidence	4	4	8	0.297032	3.000000	chr4	89681260	89681677	LTR|ERV1|MER61C	+	chr4	89681511	89694130	AC097478.1|ENST00000513572.2	+	89681511,89691284,89692414	89681684,89691405,89694130	0.625000
myometrial_cell_female_adult_34_years	chr12	56157286	56157409	56157353	+	High_confidence	8	11	96	3.564385	4.918337	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.843750
myometrial_cell_female_adult_34_years	chr20	380684	380686	380684	+	High_confidence	2	4	7	0.259903	2.521641	chr20	380404	380708	SINE|Alu|AluY	+	chr20	380628	397559	TRIB3|NM_021158.4	+	380628,388010,391286,396197	381169,388301,391579,397559	1.000000
myometrial_cell_female_adult_34_years	chr10	88545483	88545506	88545490	-	RAMPAGE_only	2	4	9	0.334161	2.500000	chr10	88545305	88545664	LTR|ERVL-MaLR|THE1B	-	chr10	88284958	88583213	RNLS|ENST00000331772.8	-	88284958,88314465,88362551,88572902,88581566,88582201,88583072	88285506,88314641,88362725,88573061,88581709,88582307,88583213	0.888889
myometrial_cell_female_adult_34_years	chr15	80059918	80059933	80059918	+	High_confidence	199	224	587	21.794730	5.583115	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.989779
myometrial_cell_female_adult_34_years	chr3	123884224	123884260	123884259	-	High_confidence	3	4	15	0.556935	2.789898	chr3	123883879	123884307	LINE|L1|L1M4b	+	chr3	123612295	123884302	MYLK|NM_053025.3	-	123612295,123618638,123620206,123626817,123629473,123638070,123640286,123647223,123648970,123649161,123657125,123664104,123666218,123667136,123682223,123692734,123700019,123701437,123707753,123708697,123709755,123722127,123725943,123732895,123733686,123735397,123737377,123738896,123739952,123752330,123793676,123831547,123876558,123884205	123614349,123618770,123620336,123626941,123629626,123638194,123640504,123647427,123649064,123649194,123657428,123664258,123666346,123667187,123682310,123692851,123701005,123701509,123708003,123708895,123709893,123722280,123726078,123733102,123734222,123735416,123737543,123739062,123740001,123752538,123793844,123831670,123876617,123884302	0.933333
myometrial_cell_female_adult_34_years	chr5	140700445	140700457	140700445	+	High_confidence	994	1228	3007	111.646941	4.720273	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.983705
myometrial_cell_female_adult_34_years	chr11	64226142	64226180	64226158	-	High_confidence	170	175	1005	37.314658	7.270365	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.959204
myometrial_cell_female_adult_34_years	chr8	11864408	11864423	11864418	-	RAMPAGE_only	3	3	9	0.334161	3.169925	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11844323	11868040	CTSB|ENST00000531551.5	-	11844323,11845660,11847051,11847678,11848066,11850865,11852609,11853328,11864375,11868000	11845222,11845789,11847168,11847822,11848152,11850980,11852695,11853479,11864463,11868040	0.888889
myometrial_cell_female_adult_34_years	chr2	182030747	182030774	182030747	+	High_confidence	13	13	48	1.782193	3.962398	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.812500
myometrial_cell_female_adult_34_years	chr2	174118268	174118294	174118268	-	RAMPAGE_only	3	3	11	0.408419	3.321928	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075408	174124315	OLA1|ENST00000392560.6	-	174075408,174078967,174081151,174081923,174123179,174123594,174124263	174075527,174079090,174081248,174082064,174123277,174123675,174124315	0.727273
myometrial_cell_female_adult_34_years	chr7	99358774	99358775	99358774	+	High_confidence	6	6	6	0.222774	2.584963	chr7	99358536	99358830	SINE|Alu|AluSp	-	chr7	99358665	99366214	ARPC1A|ENST00000463009.1	+	99358665,99359544,99363542,99365890	99358775,99359738,99363633,99366214	1.000000
myometrial_cell_female_adult_34_years	chr2	218287266	218287280	218287279	-	High_confidence	43	43	91	3.378740	5.290562	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.791209
myometrial_cell_female_adult_34_years	chr19	571748	571774	571758	-	High_confidence	9	11	57	2.116354	4.874483	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.912281
myometrial_cell_female_adult_34_years	chr1	6208681	6208682	6208681	-	High_confidence	49	50	50	1.856451	3.766375	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.940000
myometrial_cell_female_adult_34_years	chr9	70479947	70479948	70479947	-	High_confidence	29	29	30	1.113870	3.754533	chr9	70479667	70479912	SINE|MIR|MIRb	-	chr9	70479360	70479706	MSTRG.29555.1	-	70479360	70479706	0.566667
myometrial_cell_female_adult_34_years	chr19	566688	566730	566729	+	RAMPAGE_only	6	6	13	0.482677	3.584963	chr19	566638	566854	LTR|ERV1|LTR4	-	chr19	571276	583493	BSG|NM_198590.2	+	571276,579499,580378,580645,581314,582305,582513,582749	571579,579656,580461,580782,581591,582330,582582,583493	0.692308
myometrial_cell_female_adult_34_years	chr6	169654674	169654742	169654701	-	RAMPAGE_only	5	5	36	1.336644	4.614369	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169457211	169649233	WDR27|ENST00000479310.5	-	169457211,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197	169457634,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649233	0.500000
myometrial_cell_female_adult_34_years	chr7	43694107	43694128	43694107	-	RAMPAGE_only	8	8	26	0.965354	3.950064	chr7	43693084	43695551	LINE|L2|L2a	+	chr7	43609232	43729483	COA1|ENST00000446564.5	-	43609232,43639448,43640572,43645250,43647534,43648599,43650611,43729428	43609641,43639681,43640649,43645399,43647634,43648652,43650712,43729483	0.769231
myometrial_cell_female_adult_34_years	chr17	41521716	41521763	41521747	-	High_confidence	35	41	209	7.759964	5.746889	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41513745	41521774	KRT15|ENST00000474031.5	-	41513745,41515884,41516103,41516807,41518329,41521684	41515692,41516010,41516265,41516964,41518461,41521774	0.923445
myometrial_cell_female_adult_34_years	chr3	9792254	9792271	9792254	-	High_confidence	3	3	9	0.334161	2.500000	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9779966	9792408	MSTRG.20314.2	-	9779966,9784027,9785315,9787005,9787198,9789508,9789712,9791259,9792215	9780549,9784213,9785425,9787109,9787340,9789614,9789963,9791485,9792408	0.888889
myometrial_cell_female_adult_34_years	chr4	2867814	2867851	2867850	+	High_confidence	3	3	8	0.297032	2.750000	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
myometrial_cell_female_adult_34_years	chr15	66502611	66502741	66502611	-	High_confidence	89	89	847	31.448274	6.511420	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.919717
myometrial_cell_female_adult_34_years	chr11	64318703	64318734	64318733	+	High_confidence	4	4	11	0.408419	3.459432	chr11	64318595	64318908	SINE|Alu|AluSx	-	chr11	64318181	64321740	PRDX5|ENST00000352435.8	+	64318181,64319733,64320864,64321006,64321585	64318386,64319868,64320903,64321068,64321740	0.909091
myometrial_cell_female_adult_34_years	chr14	50757004	50757042	50757004	-	RAMPAGE_only	6	6	11	0.408419	3.095795	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
myometrial_cell_female_adult_34_years	chr8	68760112	68760122	68760121	+	RAMPAGE_only	6	8	15	0.556935	3.506891	chr8	68759841	68760175	LINE|L2|L2c	-	chr8	68437912	68819022	C8orf34|ENST00000337103.8	+	68437912,68446328,68468691,68488022,68521798,68532982,68640375,68708993,68721360,68776398,68787442,68815885,68818238	68439646,68446460,68468820,68488051,68521971,68533149,68640511,68709079,68721437,68776449,68787536,68815945,68819022	0.666667
myometrial_cell_female_adult_34_years	chr5	134875055	134875087	134875055	+	High_confidence	5	6	23	0.853967	4.055958	chr5	134874872	134875108	SINE|MIR|MIRb	-	chr5	134875095	134888180	TXNDC15|ENST00000508810.1	+	134875095,134887694	134875188,134888180	0.913043
myometrial_cell_female_adult_34_years	chr9	127531649	127531681	127531669	-	RAMPAGE_only	3	3	12	0.445548	3.277613	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127505342	127568885	MSTRG.30070.2	-	127505342,127505767,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127505551,127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127568885	0.833333
myometrial_cell_female_adult_34_years	chr13	32205855	32205901	32205900	+	RAMPAGE_only	4	4	10	0.371290	2.846439	chr13	32205708	32206645	LINE|L2|L2c	-	chr13	32031299	32296610	FRY|ENST00000642040.1	+	32031299,32078833,32101962,32117333,32124285,32124601,32124794,32131671,32134903,32135084,32136870,32147281,32147838,32149747,32155490,32157272,32161143,32171011,32173366,32175545,32178176,32178843,32179674,32182976,32184599,32184975,32186259,32187545,32194142,32201940,32202355,32208852,32209584,32210865,32212291,32218748,32224234,32224932,32225788,32228455,32231178,32234573,32236077,32237378,32239251,32239710,32244041,32247322,32249525,32251877,32254223,32257963,32261615,32262313,32265449,32267169,32274841,32276463,32278464,32289632,32294367,32295201	32031865,32079033,32102016,32117473,32124376,32124681,32124875,32131840,32134996,32135183,32136972,32147385,32147947,32149834,32155662,32157405,32161251,32171270,32173549,32175632,32178436,32179033,32179799,32183034,32184691,32185148,32186420,32187656,32194297,32202040,32202527,32209109,32209731,32211034,32212382,32218831,32224385,32225036,32225974,32228654,32231300,32234761,32236172,32237986,32239349,32239881,32244182,32247502,32249687,32251952,32254394,32257972,32261816,32262475,32265616,32267359,32274991,32276562,32278548,32289743,32294570,32296610	0.900000
myometrial_cell_female_adult_34_years	chr11	4129116	4129134	4129116	+	RAMPAGE_only	4	4	12	0.445548	2.845351	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.916667
myometrial_cell_female_adult_34_years	chr3	158792886	158792919	158792913	-	High_confidence	10	10	33	1.225257	3.483492	chr3	158792768	158793494	DNA|TcMar-Tigger|Tigger7	+	chr3	158780770	158792812	MSTRG.21660.1	-	158780770,158792779	158781090,158792812	0.727273
myometrial_cell_female_adult_34_years	chr7	134711499	134711504	134711503	+	RAMPAGE_only	17	17	34	1.262386	4.559546	chr7	134711275	134711628	LTR|ERVL|MLT2D	+	chr7	134744251	134968402	CALD1|ENST00000417172.5	+	134744251,134843883,134867692,134928753,134932987,134941091,134947507,134950373,134958068,134958208,134959973,134960532,134965305,134968339	134744363,134843971,134867804,134928900,134933390,134941237,134947769,134950514,134958112,134958290,134960111,134960628,134965386,134968402	0.941176
myometrial_cell_female_adult_34_years	chr20	47334091	47334092	47334091	-	RAMPAGE_only	5	6	7	0.259903	2.584963	chr20	47333982	47334311	DNA|TcMar-Tigger|Tigger5b	-	chr20	47210412	47348019	MSTRG.19009.11	-	47210412,47212641,47220257,47221313,47224316,47227202,47229725,47236325,47238895,47246007,47249286,47262287,47276313,47282101,47283570,47287228,47290186,47291795,47294665,47298728,47310055,47347855,47348016	47210897,47212725,47220324,47221474,47224556,47227281,47229806,47236516,47239138,47246517,47249439,47262428,47276795,47282217,47283648,47287284,47290274,47291888,47294779,47298872,47310204,47347926,47348019	0.571429
myometrial_cell_female_adult_34_years	chr12	108630674	108630727	108630676	-	RAMPAGE_only	10	16	40	1.485160	4.932138	chr12	108630567	108630719	SINE|MIR|MIRc	+	chr12	108621894	108632078	SELPLG|NM_001206609.1	-	108621894,108631858	108624312,108632078	0.950000
myometrial_cell_female_adult_34_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	11	12	12	0.445548	3.027169	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.916667
myometrial_cell_female_adult_34_years	chr10	4678146	4678214	4678146	-	High_confidence	4	4	26	0.965354	3.736441	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.807692
myometrial_cell_female_adult_34_years	chr3	50226714	50226728	50226714	+	High_confidence	15	15	57	2.116354	4.784216	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	1.000000
myometrial_cell_female_adult_34_years	chr14	102240612	102240615	102240614	-	High_confidence	13	20	24	0.891096	3.969002	chr14	102240323	102240748	LTR|ERV1|HERVH-int	+	chr14	102228838	102240611	MOK|ENST00000524370.5	-	102228838,102229456,102232534,102233687,102240451	102229366,102229657,102232708,102233789,102240611	0.958333
myometrial_cell_female_adult_34_years	chr11	17282808	17282831	17282821	+	RAMPAGE_only	11	11	30	1.113870	4.523231	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.866667
myometrial_cell_female_adult_34_years	chr12	65642656	65642668	65642657	+	RAMPAGE_only	6	8	14	0.519806	3.467720	chr12	65642543	65642731	LINE|L2|L2c	-	chr12	65644333	65663299	AC090023.2|ENST00000540875.1	+	65644333,65647393,65663208	65644481,65647699,65663299	0.500000
myometrial_cell_female_adult_34_years	chr12	89449218	89449239	89449220	-	RAMPAGE_only	5	9	14	0.519806	3.521641	chr12	89449194	89449260	SINE|MIR|MIRc	+	chr12	89420786	89461842	POC1B|ENST00000546740.5	-	89420786,89425160,89461621	89421257,89425379,89461842	0.714286
myometrial_cell_female_adult_34_years	chr15	66354122	66354123	66354122	-	RAMPAGE_only	8	8	9	0.334161	2.750000	chr15	66354028	66355027	LINE|L2|L2a	+	chr15	66336383	66356685	TIPIN|ENST00000566524.5	-	66336383,66341149,66349059,66349314,66352128,66352814,66356638	66337181,66341356,66349123,66349437,66352207,66352955,66356685	0.888889
myometrial_cell_female_adult_34_years	chr2	73072193	73072234	73072193	-	High_confidence	8	11	28	1.039612	4.253434	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.750000
myometrial_cell_female_adult_34_years	chr1	27525738	27525751	27525745	+	High_confidence	2	3	8	0.297032	2.521641	chr1	27525728	27525810	LINE|L2|L2b	+	chr1	27525804	27530561	BX293535.1|ENST00000443579.1	+	27525804,27530359	27525885,27530561	0.500000
myometrial_cell_female_adult_34_years	chr3	9987152	9987163	9987162	+	High_confidence	45	45	95	3.527256	5.078364	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9987214	10003097	EMC3-AS1|ENST00000440568.1	+	9987214,9987814,9988711,10002716	9987264,9987905,9988747,10003097	0.684211
myometrial_cell_female_adult_34_years	chr7	80917487	80917490	80917489	-	High_confidence	8	12	15	0.556935	3.456565	chr7	80917362	80917475	SINE|tRNA|LFSINE_Vert	-	chr7	80827429	80918429	SEMA3C|ENST00000411788.5	-	80827429,80828584,80905828,80916678,80918300	80827487,80828745,80905916,80916819,80918429	0.933333
myometrial_cell_female_adult_34_years	chr4	39319805	39319810	39319808	-	RAMPAGE_only	6	9	13	0.482677	3.022055	chr4	39319668	39319780	DNA|TcMar-Tigger|MER44B	-	chr4	39312763	39318070	RFC1|ENST00000509084.1	-	39312763,39316914,39317863	39312931,39317022,39318070	0.692308
myometrial_cell_female_adult_34_years	chr11	71999597	71999642	71999641	+	High_confidence	4	4	17	0.631193	3.202820	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.882353
myometrial_cell_female_adult_34_years	chr4	105399956	105399962	105399956	-	High_confidence	6	6	12	0.445548	3.027169	chr4	105399771	105400125	DNA|TcMar-Tigger|Tigger7	+	chr4	105369564	105399636	PPA2|ENST00000513605.5	-	105369564,105370836,105386566,105396248,105399036	105369753,105370873,105386636,105396334,105399636	0.916667
myometrial_cell_female_adult_34_years	chr22	37755641	37755643	37755641	+	RAMPAGE_only	5	8	11	0.408419	2.721928	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	0.818182
myometrial_cell_female_adult_34_years	chr18	59666163	59666166	59666165	-	RAMPAGE_only	17	26	27	1.002483	4.440636	chr18	59665992	59666361	LTR|ERVL-MaLR|THE1B	-	chr18	59430938	59697412	CCBE1|NM_133459.3	-	59430938,59438110,59439542,59439676,59447982,59454850,59466738,59469472,59480185,59696628,59697211	59436141,59438146,59439578,59439816,59448103,59454951,59466891,59469607,59480238,59696709,59697412	0.666667
NCI_H460_cytosolic_fraction	chr6	63442345	63442346	63442345	-	High_confidence	144	146	198	6.868676	5.424032	chr6	63441883	63443495	LTR|ERV1|LTR12C	-	chr6	63350478	63442335	STRG.12282.3	-	63350478,63379295,63382364,63404505,63441714	63350841,63379466,63382556,63404601,63442335	0.974747
NCI_H460_cytosolic_fraction	chr8	61578141	61578142	61578141	+	High_confidence	2436	2443	2465	85.511551	5.571286	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.989858
NCI_H460_cytosolic_fraction	chr7	93591324	93591394	93591324	+	High_confidence	29	36	298	10.337705	6.002615	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591307	93811263	STRG.14123.4	+	93591307,93807203	93591771,93811263	0.909396
NCI_H460_cytosolic_fraction	chr10	6779602	6779631	6779602	+	High_confidence	11	11	39	1.352921	4.855790	chr10	6779419	6779969	LTR|ERVL|MLT2A2	+	chr10	6779597	6842906	LINC00707|NR_038291.1	+	6779597,6781303,6833642,6837973,6840390	6779887,6781486,6833688,6838008,6842906	0.923077
NCI_H460_cytosolic_fraction	chr7	134527596	134527597	134527596	+	High_confidence	25064	26201	30310	1051.462516	7.680986	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.968987
NCI_H460_cytosolic_fraction	chr8	128415480	128415520	128415519	-	High_confidence	9	9	31	1.075399	4.720050	chr8	128415090	128415709	LINE|L2|L2a	+	chr8	128406260	128415381	LINC00824|ENST00000517583.1	-	128406260,128406775,128414213,128414540,128415365	128406633,128406846,128414408,128414690,128415381	0.516129
NCI_H460_cytosolic_fraction	chr1	51919271	51919302	51919281	-	RAMPAGE_only	2	2	13	0.450974	3.022055	chr1	51918964	51919282	SINE|Alu|AluYb8	-	chr1	51907955	51990764	RAB3B|NM_002867.3	-	51907955,51933317,51937293,51976889,51990551	51920114,51933442,51937412,51977117,51990764	0.923077
NCI_H460_cytosolic_fraction	chr6	28984742	28984786	28984785	+	RAMPAGE_only	5	5	18	0.624425	3.572431	chr6	28984677	28984982	SINE|Alu|AluY	-	chr6	28986041	28990730	STRG.11806.1	+	28986041,28986312,28986676,28988299	28986232,28986506,28986879,28990730	0.944444
NCI_H460_cytosolic_fraction	chr2	206161369	206161467	206161466	+	High_confidence	13	14	207	7.180889	5.779274	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	0.942029
NCI_H460_cytosolic_fraction	chr1	172933705	172933729	172933728	-	High_confidence	35	40	87	3.018055	5.566338	chr1	172933527	172933822	SINE|Alu|AluY	+	chr1	172924598	172933722	STRG.2443.1	-	172924598,172926691,172933500	172924733,172926734,172933722	0.643678
NCI_H460_cytosolic_fraction	chr16	65233019	65233021	65233019	+	RAMPAGE_only	6	10	14	0.485664	3.182006	chr16	65232144	65234891	LTR|ERV1|HERVH-int	-	chr16	65231309	65393732	STRG.26459.4	+	65231309,65371096,65373442,65392993	65233403,65371185,65373583,65393732	0.785714
NCI_H460_cytosolic_fraction	chr16	11640246	11640265	11640246	-	RAMPAGE_only	4	5	19	0.659115	3.503258	chr16	11640197	11640395	SINE|MIR|MIR3	-	chr16	11556556	11636381	LITAF|ENST00000574848.5	-	11556556,11633532,11635824,11636240	11556735,11633637,11635953,11636381	0.526316
NCI_H460_cytosolic_fraction	chr13	70407220	70407224	70407220	+	RAMPAGE_only	7	7	17	0.589735	3.499228	chr13	70407027	70407423	LTR|ERVL|MLT2A1	+	chr13	70479599	70480032	STRG.22954.1	+	70479599	70480032	0.647059
NCI_H460_cytosolic_fraction	chr4	94665324	94665339	94665338	+	RAMPAGE_only	3	3	8	0.277522	2.807355	chr4	94665201	94665506	SINE|Alu|AluSc	+	chr4	94451901	94668223	PDLIM5|ENST00000317968.8	+	94451901,94455246,94523723,94573350,94575615,94585564,94586407,94618003,94640275,94654459,94657426,94662421,94663977	94451995,94455384,94523875,94573393,94576034,94585737,94586444,94618191,94640450,94654640,94657547,94662537,94668223	0.875000
NCI_H460_cytosolic_fraction	chr9	39809803	39809865	39809858	-	High_confidence	23	35	121	4.197524	4.226090	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803493	39810013	STRG.16625.2	-	39803493,39809485,39809730	39803859,39809615,39810013	0.925620
NCI_H460_cytosolic_fraction	chr10	101730047	101730119	101730060	-	High_confidence	106	113	672	23.311871	5.489208	chr10	101729855	101730163	SINE|Alu|AluY	+	chr10	101700345	101730132	STRG.18819.3	-	101700345,101704452,101708164,101729716	101702295,101704705,101708401,101730132	0.973214
NCI_H460_cytosolic_fraction	chr3	58526760	58526771	58526765	-	High_confidence	81	85	182	6.313632	6.086161	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	0.978022
NCI_H460_cytosolic_fraction	chr15	74354434	74354449	74354435	+	High_confidence	26	32	50	1.734514	4.883856	chr15	74354143	74354537	LTR|ERV1|LTR7	+	chr15	74354455	74364620	PPIAP46|ENST00000562009.1	+	74354455,74361513	74354685,74364620	0.820000
NCI_H460_cytosolic_fraction	chr6	53616952	53616976	53616975	-	High_confidence	10	11	22	0.763186	4.061482	chr6	53616804	53617217	LTR|ERVL-MaLR|MSTA	-	chr6	53522464	53616970	GCLC|ENST00000505197.1	-	53522464,53564116,53564749,53616885	53522527,53564420,53564889,53616970	0.636364
NCI_H460_cytosolic_fraction	chr4	189722280	189722291	189722290	-	RAMPAGE_only	9	9	16	0.555045	3.750000	chr4	189721949	189722303	LINE|L1|L1M3b	+	chr4	189707561	189708301	STRG.9551.1	-	189707561	189708301	0.687500
NCI_H460_cytosolic_fraction	chr3	190144904	190145070	190144904	+	High_confidence	281	283	667	23.138420	7.691771	chr3	190144599	190145007	LTR|ERV1|LTR7	+	chr3	190144001	190412143	STRG.7902.1	+	190144001,190144605,190144997,190146169,190151670,190170022,190172818,190265291,190290477,190314892,190404761,190408313,190409902	190144046,190144848,190145135,190147053,190151714,190170115,190172959,190265460,190290591,190315059,190404926,190408505,190412143	0.517241
NCI_H460_cytosolic_fraction	chr11	123061128	123061316	123061212	-	High_confidence	36	42	503	17.449213	6.557486	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.968191
NCI_H460_cytosolic_fraction	chr8	102925026	102925070	102925045	+	RAMPAGE_only	23	23	124	4.301595	5.909517	chr8	102925075	102925163	DNA|hAT-Charlie|MER5B	+	chr8	102927599	102931015	STRG.15888.1	+	102927599,102928124,102930330,102930741	102927612,102928188,102930518,102931015	0.620968
NCI_H460_cytosolic_fraction	chr9	32997349	32997350	32997349	-	High_confidence	6	6	6	0.208142	2.584963	chr9	32997347	32997748	LINE|L2|L2c	-	chr9	32972762	32997360	APTX|ENST00000479656.5	-	32972762,32974457,32984630,32985970,32987543,32988078,32989758,32997242	32973652,32974561,32984857,32986030,32987842,32988124,32989895,32997360	1.000000
NCI_H460_cytosolic_fraction	chr7	2242922	2242923	2242922	+	High_confidence	181	185	187	6.487083	6.508363	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.989305
NCI_H460_cytosolic_fraction	chr1	197177348	197177365	197177364	-	RAMPAGE_only	3	4	6	0.208142	2.584963	chr1	197177111	197177479	LTR|ERVL-MaLR|THE1D	+	chr1	197158441	197200521	ZBTB41|ENST00000467322.1	-	197158441,197172159,197175009,197175930,197176563,197178416,197180987,197188291,197190761,197191691,197199353	197160014,197172248,197175115,197176014,197176670,197178512,197181117,197188439,197190831,197191899,197200521	1.000000
NCI_H460_cytosolic_fraction	chr18	11860065	11860066	11860065	-	High_confidence	8	9	12	0.416283	3.459432	chr18	11859746	11860046	SINE|Alu|AluSx	-	chr18	11857177	11859816	STRG.28956.1	-	11857177,11859343	11858126,11859816	0.666667
NCI_H460_cytosolic_fraction	chr3	193614817	193614861	193614841	+	High_confidence	3	3	13	0.450974	3.546594	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.923077
NCI_H460_cytosolic_fraction	chr22	50330653	50330680	50330653	+	RAMPAGE_only	8	8	44	1.526373	4.516028	chr22	50330424	50330745	SINE|Alu|AluY	+	chr22	50343303	50445090	PPP6R2|ENST00000359139.7	+	50343303,50372019,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439697,50439960,50440821,50443865,50444202	50343550,50372150,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50445090	0.840909
NCI_H460_cytosolic_fraction	chr6	53617119	53617122	53617121	-	High_confidence	5	8	12	0.416283	3.277613	chr6	53616804	53617217	LTR|ERVL-MaLR|MSTA	-	chr6	53561905	53617171	AL033397.1|ENST00000503985.5	-	53561905,53564749,53569422,53616885	53564420,53564889,53569605,53617171	0.666667
NCI_H460_cytosolic_fraction	chr2	201233753	201233776	201233775	+	High_confidence	6	7	17	0.589735	3.452820	chr2	201233588	201233824	SINE|MIR|MIRb	-	chr2	201233505	201242925	STRG.5576.17	+	201233505,201234015,201240269	201233554,201234112,201242925	0.588235
NCI_H460_cytosolic_fraction	chr17	59202248	59202270	59202257	+	RAMPAGE_only	2	2	7	0.242832	2.584963	chr17	59202290	59202580	SINE|Alu|AluJo	+	chr17	59155498	59206709	PRR11|NM_018304.3	+	59155498,59169747,59185053,59185439,59193491,59194756,59195330,59197543,59197692,59201562	59155805,59169880,59185204,59185562,59193734,59194855,59195443,59197603,59197789,59206709	0.857143
NCI_H460_cytosolic_fraction	chr1	235330447	235330461	235330459	+	RAMPAGE_only	7	13	22	0.763186	4.201841	chr1	235330202	235330492	SINE|Alu|AluYf1	+	chr1	235329028	235342559	GGPS1|ENST00000497327.1	+	235329028,235335241,235341707,235342010	235329183,235335334,235341778,235342559	0.727273
NCI_H460_cytosolic_fraction	chr3	46163779	46163789	46163779	+	High_confidence	11	11	27	0.936638	4.315824	chr3	46161736	46164342	LINE|L1|L1PA12	-	chr3	46163707	46190160	STRG.6590.1	+	46163707,46188931	46163862,46190160	0.888889
NCI_H460_cytosolic_fraction	chr4	73721069	73721070	73721069	-	High_confidence	36687	42040	49378	1712.936857	4.997496	chr4	73720899	73721266	LTR|ERVL-MaLR|THE1B	-	chr4	73701848	73721129	STRG.8661.1	-	73701848,73720983	73706575,73721129	0.977196
NCI_H460_cytosolic_fraction	chr3	135965723	135965749	135965723	+	High_confidence	7	10	39	1.352921	4.701944	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.948718
NCI_H460_cytosolic_fraction	chr19	12800915	12801023	12800944	-	High_confidence	9	9	87	3.018055	4.541318	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.965517
NCI_H460_cytosolic_fraction	chr14	101731467	101731526	101731490	+	RAMPAGE_only	14	14	98	3.399648	5.569878	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.806122
NCI_H460_cytosolic_fraction	chr9	104116262	104116313	104116312	+	RAMPAGE_only	3	4	13	0.450974	3.334679	chr9	104116275	104116318	DNA|hAT-Charlie|MER5A	+	chr9	104094563	104139651	SMC2|ENST00000374787.7	+	104094563,104095323,104096147,104098445,104099643,104100092,104100388,104101959,104102423,104111580,104113315,104113963,104114690,104116199,104118170,104120026,104123107,104124911,104126640,104127285,104129644,104132008,104134414,104138017,104139138	104094838,104095552,104096297,104098568,104099682,104100203,104100433,104102193,104102573,104111814,104113475,104114081,104114829,104116319,104118375,104120162,104123232,104125105,104126784,104127480,104129845,104132125,104134575,104138165,104139651	1.000000
NCI_H460_cytosolic_fraction	chr15	30624357	30624378	30624364	+	High_confidence	13	14	38	1.318231	4.315623	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.868421
NCI_H460_cytosolic_fraction	chr2	43982237	43982304	43982250	-	RAMPAGE_only	2	2	20	0.693806	3.892407	chr2	43981908	43982201	SINE|Alu|AluSz6	-	chr2	43974149	43995976	LRPPRC|ENST00000447246.1	-	43974149,43974613,43975090,43976142,43976993,43977154,43979825,43982237,43995773	43974295,43974758,43975217,43976229,43977052,43977276,43979948,43982434,43995976	0.950000
NCI_H460_cytosolic_fraction	chr7	93591534	93591658	93591589	+	High_confidence	22	22	260	9.019474	6.691772	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591307	93811263	STRG.14123.4	+	93591307,93807203	93591771,93811263	0.765385
NCI_H460_cytosolic_fraction	chr14	23636366	23636367	23636366	+	High_confidence	22	23	30	1.040709	4.280226	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	0.966667
NCI_H460_cytosolic_fraction	chr10	125824919	125824943	125824924	+	RAMPAGE_only	11	11	56	1.942656	5.336319	chr10	125824830	125824934	LINE|L2|L2b	-	chr10	125823545	125836553	BCCIP|ENST00000278100.10	+	125823545,125826590,125827557,125830561,125831419,125833771,125836103	125823722,125826665,125827638,125830651,125831607,125833946,125836553	0.892857
NCI_H460_cytosolic_fraction	chr1	89128404	89128444	89128443	+	RAMPAGE_only	8	9	55	1.907966	4.940184	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89149338	89179590	STRG.1383.1	+	89149338,89179318	89149546,89179590	0.618182
NCI_H460_cytosolic_fraction	chr15	53540743	53540838	53540743	-	High_confidence	79	81	338	11.725316	5.466652	chr15	53540633	53546677	LINE|L1|L1PA2	+	chr15	53515162	53540832	STRG.24933.6	-	53515162,53523217,53540661	53517754,53523322,53540832	0.970414
NCI_H460_cytosolic_fraction	chr4	138251948	138251954	138251948	-	RAMPAGE_only	2	2	7	0.242832	2.521641	chr4	138251504	138252132	LINE|L1|L1MC4	+	chr4	138164093	138242349	SLC7A11|NM_014331.3	-	138164093,138179216,138180640,138182296,138183201,138185120,138214584,138219265,138223198,138232266,138236324,138241792	138172017,138179394,138180790,138182393,138183305,138185244,138214629,138219365,138223324,138232382,138236451,138242349	1.000000
NCI_H460_cytosolic_fraction	chr14	50678399	50678400	50678399	+	RAMPAGE_only	4	5	6	0.208142	2.584963	chr14	50678185	50678560	LTR|ERVL-MaLR|MLT1D	+	chr14	50743499	50745329	STRG.23598.1	+	50743499,50744074,50744293,50745042	50743552,50744196,50744410,50745329	0.666667
NCI_H460_cytosolic_fraction	chr12	131371697	131371737	131371697	-	High_confidence	19	20	95	3.295577	5.776339	chr12	131371471	131371655	LTR|ERVL|LTR33A	-	chr12	131350255	131371773	STRG.22448.3	-	131350255,131353686,131368940	131352999,131353783,131371773	0.989474
NCI_H460_cytosolic_fraction	chr18	63702302	63702325	63702324	+	High_confidence	5	5	19	0.659115	3.947703	chr18	63702310	63702603	SINE|Alu|AluSg	+	chr18	63702303	63723893	SERPINB11|NM_080475.3	+	63702303,63702850,63710178,63711334,63712564,63716034,63720012,63720830,63722994	63702377,63703006,63710361,63711394,63712693,63716152,63720155,63720986,63723893	0.789474
NCI_H460_cytosolic_fraction	chr18	36807863	36807880	36807863	-	High_confidence	2	2	7	0.242832	2.584963	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.714286
NCI_H460_cytosolic_fraction	chr6	127330872	127330923	127330872	-	High_confidence	2	2	16	0.555045	3.625000	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.500000
NCI_H460_cytosolic_fraction	chr7	154928503	154928504	154928503	+	High_confidence	28	29	41	1.422302	4.948896	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.804878
NCI_H460_cytosolic_fraction	chr2	113477086	113477099	113477086	+	RAMPAGE_only	2	2	7	0.242832	2.807355	chr2	113471481	113477545	LINE|L1|L1PA3	-	chr2	113481517	113496121	CBWD2|ENST00000468417.1	+	113481517,113493756,113493928	113482228,113493825,113496121	1.000000
NCI_H460_cytosolic_fraction	chr3	57197096	57197110	57197109	+	RAMPAGE_only	5	9	13	0.450974	3.238901	chr3	57196989	57197284	SINE|Alu|AluYc	-	chr3	57227725	57278105	APPL1|ENST00000650354.1	+	57227725,57235565,57237491,57238044,57240464,57242100,57242855,57246075,57247394,57248192,57249359,57252268,57253681,57256956,57257245,57259027,57259844,57260116,57260627,57267741,57268397,57269540,57276303,57277792	57227937,57235664,57237551,57238116,57240552,57242142,57242914,57246222,57247477,57248351,57249548,57252311,57253738,57257051,57257428,57259080,57260019,57260153,57260774,57267792,57268487,57269751,57276459,57278105	0.846154
NCI_H460_cytosolic_fraction	chr16	65233337	65233367	65233366	-	RAMPAGE_only	6	6	13	0.450974	2.855389	chr16	65232144	65234891	LTR|ERV1|HERVH-int	-	chr16	65190972	65234914	AC009055.2|ENST00000567058.1	-	65190972,65203898,65233014,65234885	65191215,65204092,65233885,65234914	0.692308
NCI_H460_cytosolic_fraction	chr12	109881095	109881116	109881115	-	High_confidence	5	5	11	0.381593	2.913977	chr12	109881109	109881661	LTR|ERV1|MER51B	+	chr12	109850942	109880488	GLTP|NM_016433.3	-	109850942,109855618,109857525,109858682,109880271	109852737,109855769,109857659,109858741,109880488	1.000000
NCI_H460_cytosolic_fraction	chr5	140700360	140700452	140700445	+	High_confidence	1759	2500	5644	195.791964	4.917605	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.990432
NCI_H460_cytosolic_fraction	chr7	99410041	99410057	99410041	+	RAMPAGE_only	3	5	13	0.450974	3.392747	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	1.000000
NCI_H460_cytosolic_fraction	chr10	93431427	93431449	93431427	-	RAMPAGE_only	6	6	14	0.485664	3.521641	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	1.000000
NCI_H460_cytosolic_fraction	chr9	105299106	105299125	105299121	+	RAMPAGE_only	35	35	74	2.567081	5.574054	chr9	105298796	105299133	LINE|L2|L2b	-	chr9	105294665	105335587	SLC44A1|ENST00000607692.1	+	105294665,105299219,105299742,105309723,105335562	105294798,105299309,105299937,105309866,105335587	0.567568
NCI_H460_cytosolic_fraction	chr5	58153316	58153321	58153316	-	High_confidence	25	25	51	1.769204	4.868758	chr5	58153071	58155350	LINE|L1|L1PB1	+	chr5	58150960	58153307	STRG.10000.1	-	58150960,58151941,58153171	58151523,58152020,58153307	0.941176
NCI_H460_cytosolic_fraction	chr2	113830900	113830922	113830921	-	RAMPAGE_only	7	7	21	0.728496	3.110578	chr2	113830816	113830918	SINE|MIR|MIRb	-	chr2	113819057	113820585	STRG.4739.1	-	113819057,113820525	113819595,113820585	0.714286
NCI_H460_cytosolic_fraction	chrX	23884019	23884032	23884031	-	High_confidence	3	5	14	0.485664	3.700440	chrX	23883973	23884117	LINE|L2|L2c	-	chrX	23856355	23884019	APOO|ENST00000633372.1	-	23856355,23858641,23868592,23874402,23878914,23880844,23883358	23856382,23858733,23868688,23874457,23879034,23880952,23884019	0.857143
NCI_H460_cytosolic_fraction	chr12	26914558	26914572	26914558	-	RAMPAGE_only	4	4	12	0.416283	3.459432	chr12	26914520	26914587	LINE|RTE-BovB|MamRTE1	+	chr12	26905180	26917734	INTS13|ENST00000538155.5	-	26905180,26906301,26911177,26913456,26913973,26916001,26917351,26917643	26905536,26906437,26911317,26913687,26914128,26916180,26917441,26917734	0.916667
NCI_H460_cytosolic_fraction	chr2	9554938	9554954	9554953	-	High_confidence	7	7	18	0.624425	4.058814	chr2	9554869	9555063	DNA|hAT-Tip100?|MamRep1879	-	chr2	9488636	9554729	ADAM17|ENST00000648548.1	-	9488636,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152,9551474,9554708	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526264,9527954,9535922,9536828,9543285,9551757,9554729	0.944444
NCI_H460_cytosolic_fraction	chr16	30429260	30429289	30429288	-	High_confidence	3	3	8	0.277522	3.000000	chr16	30429210	30429354	SINE|MIR|MIR3	+	chr16	30423913	30429289	DCTPP1|ENST00000568434.1	-	30423913,30429056	30424533,30429289	0.875000
NCI_H460_cytosolic_fraction	chr12	643627	643660	643635	-	High_confidence	4	4	16	0.555045	2.973557	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.937500
NCI_H460_cytosolic_fraction	chrX	41621373	41621406	41621405	+	High_confidence	6	6	18	0.624425	3.734522	chrX	41621194	41621705	LTR|ERVL-MaLR|MLT1F2	+	chrX	41621352	41648343	STRG.33339.1	+	41621352,41647531	41621671,41648343	0.611111
NCI_H460_cytosolic_fraction	chr7	102973382	102973402	102973382	-	High_confidence	3	4	8	0.277522	2.521641	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102811039	102973306	STRG.14375.2	-	102811039,102822039,102854776,102877466,102878330,102883304,102883567,102884213,102913085,102926273,102931880,102963532,102968021,102973149	102813531,102822203,102854860,102877593,102878450,102883467,102883685,102884312,102913215,102926374,102931933,102963665,102968117,102973306	0.875000
NCI_H460_cytosolic_fraction	chr1	188822666	188822683	188822666	-	High_confidence	3	3	13	0.450974	2.792481	chr1	188822207	188822962	LINE|L1|L1M4b	+	chr1	188796943	188822601	STRG.2625.4	-	188796943,188814464,188822181	188797658,188814611,188822601	0.923077
NCI_H460_cytosolic_fraction	chr16	66408519	66408564	66408519	+	High_confidence	8	13	40	1.387611	5.121928	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66412135	LINC00920|ENST00000499966.1	+	66408523,66410279	66408814,66412135	0.900000
NCI_H460_cytosolic_fraction	chr12	79045155	79045156	79045155	+	High_confidence	5	6	8	0.277522	2.521641	chr12	79039621	79045645	LINE|L1|L1PA2	-	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.500000
NCI_H460_cytosolic_fraction	chr10	121974526	121974547	121974539	-	High_confidence	6	6	21	0.728496	3.821928	chr10	121974357	121974506	DNA|hAT-Charlie|MER5A	-	chr10	121959364	121974285	NSMCE4A|ENST00000468209.5	-	121959364,121959500,121960357,121961422,121963237,121965285,121967654,121970938,121974003	121959410,121959595,121960406,121961517,121963328,121965385,121967806,121971069,121974285	0.714286
NCI_H460_cytosolic_fraction	chr2	196527499	196527508	196527499	-	RAMPAGE_only	4	4	11	0.381593	3.121928	chr2	196521488	196527500	LINE|L1|L1PA2	-	chr2	196199336	196586729	HECW2|ENST00000644256.1	-	196199336,196215864,196217007,196220038,196220794,196222210,196225771,196228101,196240448,196242083,196253919,196257822,196271192,196274020,196278527,196292564,196306487,196307129,196307934,196317273,196318551,196320338,196322477,196324979,196329574,196334423,196343656,196433131,196586507	196201388,196215977,196217093,196220153,196220941,196222340,196225870,196228254,196240562,196242204,196254029,196257906,196271289,196274123,196278662,196292750,196306612,196307233,196308085,196317369,196319904,196320439,196322620,196325149,196329650,196334518,196343764,196433458,196586729	0.727273
NCI_H460_cytosolic_fraction	chr10	5095891	5095947	5095891	+	RAMPAGE_only	5	5	22	0.763186	3.684184	chr10	5095908	5096092	LTR|ERVL|MER68	+	chr10	5094375	5107686	AKR1C3|NM_003739.5	+	5094375,5096409,5097433,5098801,5099326,5102100,5102484,5105594,5107460	5094528,5096577,5097550,5098879,5099449,5102210,5102650,5105677,5107686	0.681818
NCI_H460_cytosolic_fraction	chr8	128415566	128415615	128415566	-	RAMPAGE_only	2	2	14	0.485664	3.546594	chr8	128415090	128415709	LINE|L2|L2a	+	chr8	128405268	128561126	STRG.16053.4	-	128405268,128406775,128414213,128414540,128418674,128421742,128423500,128428235,128561069	128406633,128406846,128414408,128418524,128420823,128421814,128423593,128428384,128561126	0.928571
NCI_H460_cytosolic_fraction	chr3	83968555	83968663	83968555	+	High_confidence	18	18	101	3.503719	6.346234	chr3	83968329	83968721	LTR|ERV1|MER51B	+	chr3	83968582	84053529	STRG.7003.1	+	83968582,83970485,83971371,83990640,84008150,84045604,84046816,84049442	83968744,83970747,83971480,83990728,84008183,84046085,84046893,84053529	0.683168
NCI_H460_cytosolic_fraction	chr9	120404295	120404311	120404295	-	High_confidence	2	2	7	0.242832	2.584963	chr9	120404225	120404383	LINE|L2|L2b	-	chr9	120389198	120403662	CDK5RAP2|ENST00000484546.1	-	120389198,120389740,120394511,120400741,120402805	120389292,120389787,120394638,120400885,120403662	0.857143
NCI_H460_cytosolic_fraction	chr15	69080874	69080891	69080890	+	High_confidence	34	35	82	2.844603	6.108308	chr15	69080204	69081232	LINE|L1|L1M7	-	chr15	69080869	69095255	STRG.25147.6	+	69080869,69090914,69094700	69081376,69092242,69095255	0.890244
NCI_H460_cytosolic_fraction	chr1	165682984	165683007	165682984	-	RAMPAGE_only	2	2	8	0.277522	2.500000	chr1	165682735	165682939	SINE|MIR|MIRb	-	chr1	165668673	165680635	ALDH9A1|ENST00000491436.1	-	165668673,165669261,165679441,165680486	165669013,165669450,165679582,165680635	0.625000
NCI_H460_cytosolic_fraction	chr12	104030726	104030727	104030726	+	High_confidence	193	194	221	7.666553	6.127539	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030728	104032259	STRG.22031.1	+	104030728,104030917	104030852,104032259	0.904977
NCI_H460_cytosolic_fraction	chr6	73645690	73645704	73645703	-	High_confidence	6	6	17	0.589735	3.452820	chr6	73645505	73645815	SINE|Alu|AluY	+	chr6	73593378	73645515	STRG.12356.1	-	73593378,73594348,73600350,73610399,73615314,73621803,73635381,73636620,73638411,73641690,73644406,73645288	73593804,73595214,73600441,73610547,73615447,73621962,73635500,73636707,73638499,73641924,73644603,73645515	0.882353
NCI_H460_cytosolic_fraction	chr9	128185577	128185589	128185577	-	RAMPAGE_only	7	7	12	0.416283	3.277613	chr9	128185400	128185541	SINE|MIR|MIR3	-	chr9	128166151	128190710	CIZ1|ENST00000415526.5	-	128166151,128166758,128167094,128169051,128169405,128170019,128176350,128177565,128178368,128178708,128180414,128180720,128185546,128190328,128190687	128166406,128166880,128167164,128169201,128169519,128170107,128176475,128177763,128178490,128179415,128180523,128180799,128185776,128190444,128190710	0.916667
NCI_H460_cytosolic_fraction	chr2	173533014	173533035	173533014	+	RAMPAGE_only	3	3	8	0.277522	2.750000	chr2	173527289	173533317	LINE|L1|L1PA3	-	chr2	173697729	173699538	STRG.5237.1	+	173697729	173699538	0.500000
NCI_H460_cytosolic_fraction	chr3	29280830	29280854	29280832	-	High_confidence	2	3	10	0.346903	2.947703	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.800000
NCI_H460_cytosolic_fraction	chr18	66596202	66596262	66596255	-	RAMPAGE_only	19	19	124	4.301595	4.712187	chr18	66595018	66596800	LINE|L1|L1PA15	+	chr18	66505044	66604088	CDH19|ENST00000540086.5	-	66505044,66529844,66534985,66543970,66544718,66551093,66554404,66568415,66572009,66603953	66505302,66529966,66535107,66544224,66544903,66551258,66554524,66568710,66572316,66604088	0.991935
NCI_H460_cytosolic_fraction	chr16	70250616	70250638	70250627	-	RAMPAGE_only	4	4	15	0.520354	3.324863	chr16	70250387	70250696	SINE|Alu|AluSx	+	chr16	70246777	70251930	EXOSC6|ENST00000435634.2	-	70246777	70251930	0.933333
NCI_H460_cytosolic_fraction	chr12	113773685	113773707	113773685	-	High_confidence	11	11	21	0.728496	3.932138	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113744576	113773683	LINC01234|NR_110026.1	-	113744576,113767074,113773614	113746595,113767208,113773683	0.523810
NCI_H460_cytosolic_fraction	chr11	123060115	123060256	123060252	-	High_confidence	43	64	524	18.177709	5.784161	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.740458
NCI_H460_cytosolic_fraction	chr11	13419664	13419703	13419689	-	RAMPAGE_only	2	3	10	0.346903	2.947703	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.500000
NCI_H460_cytosolic_fraction	chr14	73713243	73713250	73713243	-	RAMPAGE_only	3	3	8	0.277522	2.807355	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	0.875000
NCI_H460_cytosolic_fraction	chr12	116759917	116759938	116759927	+	High_confidence	77	81	229	7.944075	4.923419	chr12	116756444	116760863	LINE|L1|L1PB1	-	chr12	116760164	116851762	STRG.22217.2	+	116760164,116766813,116779194,116833791,116835959,116836180,116849313	116760621,116766914,116779348,116833941,116836025,116836282,116851762	0.986900
NCI_H460_cytosolic_fraction	chrX	74587002	74587040	74587002	-	RAMPAGE_only	2	2	14	0.485664	3.664498	chrX	74586811	74587114	SINE|Alu|AluJb	+	chrX	74585216	74614617	RLIM|ENST00000332687.10	-	74585216,74594305,74595808,74614421	74593061,74594389,74596000,74614617	1.000000
NCI_H460_cytosolic_fraction	chr12	50763449	50763494	50763449	+	High_confidence	2	2	18	0.624425	3.286896	chr12	50763350	50763657	SINE|Alu|AluJo	+	chr12	50763709	50814192	ATF1|ENST00000552510.5	+	50763709,50780139,50795908,50809455,50814009	50763741,50780238,50796009,50809589,50814192	0.888889
NCI_H460_cytosolic_fraction	chr12	70550090	70550108	70550090	+	High_confidence	7	8	17	0.589735	3.500000	chr12	70549928	70550495	LINE|L2|L2c	-	chr12	70550310	70571440	STRG.21751.1	+	70550310,70557979,70569497	70550447,70558078,70571440	0.764706
NCI_H460_cytosolic_fraction	chr4	110411303	110411335	110411334	+	RAMPAGE_only	5	5	9	0.312213	3.169925	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110476072	110565285	ENPEP|ENST00000265162.9	+	110476072,110488540,110491032,110506636,110509652,110510244,110513414,110515376,110520007,110520214,110531197,110542750,110543014,110548175,110549345,110549527,110549715,110553314,110559646,110561405	110477058,110488682,110491164,110506757,110509807,110510358,110513549,110515442,110520073,110520366,110531277,110542887,110543070,110548326,110549419,110549632,110549886,110553455,110559725,110565285	1.000000
NCI_H460_cytosolic_fraction	chr9	125538282	125538302	125538282	+	High_confidence	180	192	275	9.539828	5.750850	chr9	125538091	125538491	LINE|L2|L2	-	chr9	125538294	125542307	STRG.17387.1	+	125538294,125541134	125538364,125542307	0.941818
NCI_H460_cytosolic_fraction	chr6	46732301	46732325	46732324	-	RAMPAGE_only	3	3	11	0.381593	3.121928	chr6	46731933	46732358	LINE|L2|L2b	+	chr6	46704200	46735342	PLA2G7|ENST00000274793.11	-	46704200,46705152,46707990,46709326,46710544,46711495,46712268,46714459,46716383,46716974,46722782,46735179	46704696,46705301,46708161,46709418,46710658,46711619,46712337,46714553,46716528,46717096,46722925,46735342	0.909091
NCI_H460_cytosolic_fraction	chr3	48968611	48968652	48968651	+	RAMPAGE_only	3	3	8	0.277522	2.807355	chr3	48968698	48968808	DNA|hAT-Charlie|Charlie15a	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.875000
NCI_H460_cytosolic_fraction	chr11	47214468	47214472	47214468	+	High_confidence	3	3	7	0.242832	2.521641	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214569	47234653	DDB2|ENST00000614825.4	+	47214569,47215072,47216335,47216857,47232813,47234572	47214674,47215263,47216472,47217049,47232959,47234653	0.714286
NCI_H460_cytosolic_fraction	chr19	9140390	9140428	9140390	+	High_confidence	25	25	129	4.475047	6.183365	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.674419
NCI_H460_cytosolic_fraction	chr3	187890654	187890686	187890657	-	High_confidence	6	6	26	0.901947	3.719295	chr3	187890220	187896214	LINE|L1|L1PA2	+	chr3	187835454	187890640	STRG.7869.2	-	187835454,187877006,187890213	187836179,187877122,187890640	0.615385
NCI_H460_cytosolic_fraction	chr1	28506218	28506250	28506232	+	High_confidence	3	3	14	0.485664	3.392747	chr1	28506187	28506484	SINE|Alu|AluSx	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.928571
NCI_H460_cytosolic_fraction	chr7	22707134	22707155	22707154	-	High_confidence	2	3	7	0.242832	2.807355	chr7	22703805	22707656	LTR|ERV1|HERVH-int	+	chr7	22706682	22707377	STRG.13368.1	-	22706682	22707377	0.714286
NCI_H460_cytosolic_fraction	chr1	6208681	6208682	6208681	-	High_confidence	105	105	106	3.677170	3.541330	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.962264
NCI_H460_cytosolic_fraction	chr7	103353928	103353938	103353930	+	High_confidence	5	9	13	0.450974	3.546594	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.538462
NCI_H460_cytosolic_fraction	chr22	37849308	37849333	37849317	-	High_confidence	40	43	135	4.683188	5.468341	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.970370
NCI_H460_cytosolic_fraction	chr14	101731410	101731414	101731413	+	High_confidence	173	173	252	8.741952	6.398550	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.952381
NCI_H460_cytosolic_fraction	chr19	39485780	39485803	39485802	+	High_confidence	17	18	40	1.387611	3.789823	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	1.000000
NCI_H460_cytosolic_fraction	chr17	4143199	4143244	4143199	+	High_confidence	110	120	370	12.835405	5.745466	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.986486
NCI_H460_cytosolic_fraction	chr18	69896295	69896296	69896295	-	RAMPAGE_only	10	10	11	0.381593	3.321928	chr18	69896181	69896478	SINE|Alu|AluY	-	chr18	69864114	69947419	CD226|ENST00000577287.5	-	69864114,69867356,69873143,69895700,69944483,69946733,69947360	69864439,69867411,69873246,69896045,69944568,69946770,69947419	0.909091
NCI_H460_cytosolic_fraction	chr15	22262637	22262674	22262673	-	RAMPAGE_only	7	7	40	1.387611	3.981113	chr15	22262344	22262771	LINE|L1|L1MB7	-	chr15	22259537	22264730	STRG.24426.1	-	22259537,22261827,22262064,22262604	22259783,22261884,22262231,22264730	0.825000
NCI_H460_cytosolic_fraction	chr1	186706945	186706964	186706945	+	High_confidence	6	7	15	0.520354	3.235926	chr1	186706854	186707000	LTR|ERVL|LTR16	+	chr1	186706945	186709413	STRG.2618.1	+	186706945,186709063	186707261,186709413	0.933333
NCI_H460_cytosolic_fraction	chr1	78620056	78620057	78620056	+	High_confidence	11	17	17	0.589735	4.087463	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	1.000000
NCI_H460_cytosolic_fraction	chr6	162056827	162056900	162056895	-	High_confidence	16	16	95	3.295577	5.624253	chr6	162056564	162057090	LTR|ERVL|MER68	+	chr6	161347432	162056897	STRG.13018.1	-	161347432,161360087,161386793,161548853,161569354,161785771,161973301,162054090,162056449	161350211,161360205,161386877,161549003,161569416,161785908,161973417,162054174,162056897	0.747368
NCI_H460_cytosolic_fraction	chr5	32403105	32403146	32403108	-	RAMPAGE_only	5	6	36	1.248850	4.514718	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354628	32444518	STRG.9773.2	-	32354628,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444499	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444518	0.972222
NCI_H460_cytosolic_fraction	chr14	73463624	73463630	73463629	-	High_confidence	8	8	20	0.693806	3.536887	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73460934	73463618	AC005280.2|ENST00000557577.1	-	73460934,73462528,73463474	73461264,73462689,73463618	0.700000
NCI_H460_cytosolic_fraction	chr2	153871897	153871926	153871921	+	High_confidence	6	6	13	0.450974	3.392747	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	1.000000
NCI_H460_cytosolic_fraction	chr7	158433302	158433303	158433302	+	High_confidence	9	9	9	0.312213	2.725481	chr7	158432973	158433362	LINE|L1|L1ME3	-	chr7	158433360	158452754	STRG.14965.4	+	158433360,158443149,158444243	158433573,158443349,158452754	0.888889
NCI_H460_cytosolic_fraction	chr14	102235416	102235426	102235425	-	High_confidence	4	7	9	0.312213	2.750000	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102229213	102235424	STRG.24286.17	-	102229213,102232534,102233687,102235364	102229657,102232708,102233789,102235424	0.555556
NCI_H460_cytosolic_fraction	chr5	181247592	181247599	181247598	-	High_confidence	8	8	16	0.555045	3.773557	chr5	181247404	181247700	SINE|Alu|AluY	+	chr5	181238119	181247576	RACK1|ENST00000510199.5	-	181238119,181239066,181239486,181241491,181242173,181247123	181238239,181239177,181239582,181241639,181242345,181247576	0.812500
NCI_H460_cytosolic_fraction	chr4	110410982	110410991	110410982	+	RAMPAGE_only	6	6	14	0.485664	3.664498	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110365732	110506258	ENPEP|ENST00000510961.1	+	110365732,110488540,110491032,110500028,110506182	110365804,110488682,110491164,110500163,110506258	0.571429
NCI_H460_cytosolic_fraction	chr17	41521744	41521763	41521762	-	High_confidence	4	4	12	0.416283	3.277613	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41513745	41521774	KRT15|ENST00000474031.5	-	41513745,41515884,41516103,41516807,41518329,41521684	41515692,41516010,41516265,41516964,41518461,41521774	0.916667
NCI_H460_cytosolic_fraction	chr6	109250785	109250794	109250793	+	High_confidence	6	6	20	0.693806	3.721928	chr6	109245218	109251251	LINE|L1|L1PA2	-	chr6	109250787	109271459	STRG.12587.1	+	109250787,109254447,109255370,109257545,109261888,109264800,109267807,109270038	109250991,109254648,109255492,109257774,109262091,109264956,109267901,109271459	0.750000
NCI_H460_cytosolic_fraction	chr17	19745781	19745797	19745796	-	High_confidence	3	3	7	0.242832	2.521641	chr17	19745770	19745845	LINE|L1|L1M5	+	chr17	19739507	19745680	ALDH3A1|ENST00000439102.6	-	19739507,19740335,19741092,19742003,19742544,19743231,19744967,19745442	19739674,19740477,19741210,19742212,19742630,19743463,19745134,19745680	1.000000
NCI_H460_cytosolic_fraction	chr7	115030647	115030669	115030647	+	RAMPAGE_only	6	7	29	1.006018	3.781454	chr7	115025114	115031115	LINE|L1|L1PA2	-	chr7	115078957	115126314	LINC01393|NR_120521.1	+	115078957,115118732,115122177,115125442	115079109,115118825,115122247,115126314	0.931034
NCI_H460_cytosolic_fraction	chrX	19674234	19674246	19674239	-	RAMPAGE_only	9	9	18	0.624425	3.734522	chrX	19674187	19674396	DNA|hAT-Tip100?|MamRep1879	-	chrX	19533964	19671001	SH3KBP1|NM_001184960.1	-	19533964,19537716,19541924,19545921,19549973,19569102,19588642,19592066,19594948,19607937,19631863,19645399,19670861	19536458,19537780,19542193,19546050,19550083,19569188,19588802,19592147,19595000,19608045,19631958,19645475,19671001	0.888889
NCI_H460_cytosolic_fraction	chr2	199955967	199956013	199955986	+	High_confidence	2	2	15	0.520354	3.324863	chr2	199955996	199956125	LINE|L1|L1MDb	+	chr2	199955820	200008540	MAIP1|ENST00000435773.2	+	199955820,199959267,199959753,200005742,200008465	199956248,199959339,199959880,200005777,200008540	0.600000
NCI_H460_cytosolic_fraction	chr6	41961838	41961859	41961838	-	RAMPAGE_only	5	6	23	0.797877	4.316828	chr6	41961729	41962101	LINE|L2|L2b	+	chr6	41934932	41941848	CCND3|NM_001136125.2	-	41934932,41936558,41937234,41941451	41936107,41936695,41937394,41941848	0.869565
NCI_H460_cytosolic_fraction	chr2	200889279	200889318	200889293	-	High_confidence	34	34	157	5.446375	5.879721	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.656051
NCI_H460_cytosolic_fraction	chr14	90399774	90399807	90399774	+	RAMPAGE_only	5	5	14	0.485664	3.546594	chr14	90399671	90399778	SINE|5S-Deu-L2|AmnSINE1	+	chr14	90398261	90405107	CALM1|ENST00000544280.6	+	90398261,90400064,90401258,90403861,90404378,90404688	90398488,90400095,90401402,90403968,90404514,90405107	0.857143
NCI_H460_cytosolic_fraction	chr3	149167224	149167239	149167238	+	RAMPAGE_only	4	5	9	0.312213	2.947703	chr3	149167288	149167446	SINE|MIR|MIRc	+	chr3	149160045	149172961	HPS3|ENST00000460822.1	+	149160045,149162147,149162689,149163841,149167064,149167888,149170470,149172094	149160279,149162333,149162878,149163949,149167240,149167983,149170573,149172961	0.777778
NCI_H460_cytosolic_fraction	chr8	128406356	128406526	128406525	-	RAMPAGE_only	9	13	132	4.579118	5.313559	chr8	128406203	128406516	LTR|ERVL-MaLR|MLT1H	-	chr8	128405268	128427916	LINC00824|ENST00000520206.5	-	128405268,128406775,128414213,128421742,128423500,128427657	128406633,128406846,128414408,128421814,128423593,128427916	0.984848
NCI_H460_cytosolic_fraction	chr21	29193399	29193460	29193459	+	High_confidence	21	22	81	2.809913	4.171328	chr21	29193019	29193674	LTR|ERV1|MER50B	+	chr21	29193493	29288205	LINC00189|NR_027072.2	+	29193493,29287983	29194260,29288205	0.962963
NCI_H460_cytosolic_fraction	chr2	6866552	6866553	6866552	-	High_confidence	8	8	8	0.277522	2.750000	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	1.000000
NCI_H460_cytosolic_fraction	chr19	10578892	10578893	10578892	-	RAMPAGE_only	7	7	7	0.242832	2.807355	chr19	10578557	10578847	SINE|Alu|AluJb	-	chr19	10572688	10577314	STRG.29786.2	-	10572688,10574416,10574903,10577197	10573088,10574492,10575029,10577314	1.000000
NCI_H460_cytosolic_fraction	chr16	20736822	20736922	20736822	-	RAMPAGE_only	4	4	28	0.971328	4.282484	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	0.964286
NCI_H460_cytosolic_fraction	chr1	51917710	51917753	51917710	-	RAMPAGE_only	2	2	15	0.520354	3.521641	chr1	51917568	51917845	SINE|Alu|AluJb	-	chr1	51907955	51990764	RAB3B|NM_002867.3	-	51907955,51933317,51937293,51976889,51990551	51920114,51933442,51937412,51977117,51990764	0.933333
NCI_H460_cytosolic_fraction	chr4	168138324	168138345	168138344	+	RAMPAGE_only	6	6	10	0.346903	2.947703	chr4	168138260	168138460	LINE|L1|L1PB4	-	chr4	168165183	168187690	ANXA10|ENST00000507278.5	+	168165183,168177739,168177889,168179216,168181682,168184558,168187365	168165326,168177793,168177983,168179312,168181741,168184681,168187690	0.800000
NCI_H460_cytosolic_fraction	chr7	867825	867876	867825	+	High_confidence	4	4	31	1.075399	4.478232	chr7	867609	867866	LTR|ERVL|LTR41	-	chr7	868473	874902	SUN1|ENST00000497943.1	+	868473,872469,873214	869516,872562,874902	1.000000
NCI_H460_cytosolic_fraction	chr3	28059267	28059301	28059267	-	High_confidence	4	4	18	0.624425	3.734522	chr3	28059242	28065270	LINE|L1|L1PA3	+	chr3	27997543	28059268	LINC01967|ENST00000437506.2	-	27997543,28010469,28028508,28059241	27997868,28010564,28028603,28059268	0.722222
NCI_H460_cytosolic_fraction	chr4_GL000008v2_random	170331	170368	170347	-	RAMPAGE_only	10	11	33	1.144779	4.413910	chr4_GL000008v2_random	170280	170685	LTR|ERV1|MER61C	+	chr4_GL000008v2_random	161986	178171	ANKRD20A12P|NR_046228.1	-	161986,163784,164602,175824,177526	162439,163998,164884,175974,178171	0.878788
NCI_H460_cytosolic_fraction	chr7	76512356	76512382	76512356	-	RAMPAGE_only	3	3	15	0.520354	3.521641	chr7	76512220	76512348	SINE|MIR|MIR	-	chr7	76509561	76510935	STRG.14063.1	-	76509561,76510523,76510880	76510108,76510733,76510935	0.666667
NCI_H460_cytosolic_fraction	chr8	75324596	75324665	75324606	-	High_confidence	23	35	143	4.960711	6.151242	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223702	75324741	CASC9|ENST00000522183.1	-	75223702,75324564	75224358,75324741	0.685315
NCI_H460_cytosolic_fraction	chr10	65570509	65570536	65570521	+	High_confidence	99	171	430	14.916822	6.451401	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570521	65781577	STRG.18287.1	+	65570521,65571424,65572934,65585484,65615635,65768392,65779541	65570759,65571579,65573056,65585802,65615761,65768462,65781577	0.809302
NCI_H460_cytosolic_fraction	chr17	6853863	6853929	6853928	+	High_confidence	5	5	24	0.832567	4.220176	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6895102	ALOX12P2|ENST00000576636.6	+	6853929,6854213,6892002,6894883,6895095	6854060,6854453,6892075,6895006,6895102	0.791667
NCI_H460_cytosolic_fraction	chr13	43055456	43055492	43055456	+	RAMPAGE_only	3	3	15	0.520354	3.521641	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.733333
NCI_H460_cytosolic_fraction	chr22	21001591	21001618	21001617	-	High_confidence	3	3	9	0.312213	2.750000	chr22	21001557	21001648	SINE|MIR|MIR	-	chr22	21000271	21001518	THAP7|ENST00000488975.1	-	21000271,21000646,21001255	21000432,21000729,21001518	0.777778
NCI_H460_cytosolic_fraction	chr16	57174286	57174287	57174286	-	High_confidence	6	6	6	0.208142	2.584963	chr16	57174013	57174307	SINE|Alu|AluSg	+	chr16	57153736	57173881	FAM192A|ENST00000389447.9	-	57153736,57154134,57164000,57167092,57172250,57172775,57173727	57153806,57154507,57164065,57167226,57172372,57172874,57173881	1.000000
NCI_H460_cytosolic_fraction	chr3	16697876	16697929	16697876	-	High_confidence	22	22	67	2.324249	5.025537	chr3	16697677	16698178	LTR|ERV1|MER4CL34	-	chr3	16586791	16697995	STRG.6352.1	-	16586791,16592049,16593654,16594532,16595313,16596749,16596987,16597489,16598086,16598451,16637884,16647573,16697378	16588713,16592148,16593768,16594583,16595385,16596889,16597051,16597541,16598178,16598598,16638085,16648612,16697995	0.895522
NCI_H460_cytosolic_fraction	chr10	5096011	5096012	5096011	+	High_confidence	13	13	13	0.450974	3.392747	chr10	5095908	5096092	LTR|ERVL|MER68	+	chr10	5096144	5097528	AKR1C3|ENST00000603312.1	+	5096144,5097433	5096577,5097528	0.923077
NCI_H460_cytosolic_fraction	chr17	30968780	30968789	30968783	+	High_confidence	9	12	29	1.006018	4.080050	chr17	30968749	30968853	LINE|L2|L2	-	chr17	30968784	30970307	RNF135|ENST00000582674.1	+	30968784,30970277	30969335,30970307	0.758621
NCI_H460_cytosolic_fraction	chr16	58755976	58755977	58755976	-	RAMPAGE_only	87	88	88	3.052745	4.910789	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	0.988636
NCI_H460_cytosolic_fraction	chr6	63581553	63581911	63581759	+	RAMPAGE_only	11	12	213	7.389031	5.048295	chr6	63581722	63581820	SINE|MIR|MIRb	+	chr6	63572011	63583587	AL135905.2|ENST00000370651.6	+	63572011,63576435,63578436,63578897,63579256,63580056	63572719,63576985,63578529,63579028,63579331,63583587	0.981221
NCI_H460_cytosolic_fraction	chr12	6493551	6493569	6493568	-	High_confidence	3	4	8	0.277522	2.521641	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	0.875000
NCI_H460_cytosolic_fraction	chr13	99496638	99496639	99496638	-	High_confidence	18	19	19	0.659115	4.058814	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.526316
NCI_H460_cytosolic_fraction	chr4	41359606	41359607	41359606	+	High_confidence	718	807	1010	35.037187	5.898546	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.889109
NCI_H460_cytosolic_fraction	chr2	3536487	3536530	3536496	-	High_confidence	4	4	12	0.416283	3.277613	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531989	3536869	STRG.3431.1	-	3531989,3533107,3533710,3534112,3536723	3532310,3533190,3533848,3534255,3536869	0.666667
NCI_H460_cytosolic_fraction	chr15	21273256	21273258	21273257	-	High_confidence	271	356	401	13.910804	6.143979	chr15	21273139	21273669	LTR|ERVL|LTR33A_	+	chr15	20664658	21273301	STRG.24407.2	-	20664658,20669467,20671112,21262562,21268379,21270768,21273132	20667308,20669637,20671268,21262899,21268484,21270924,21273301	0.620948
NCI_H460_cytosolic_fraction	chr19	49086488	49086547	49086546	+	RAMPAGE_only	6	6	26	0.901947	4.251629	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49085494	49108605	SNRNP70|ENST00000595231.5	+	49085494,49086404,49090290,49090465,49098426,49098641,49101389,49102113,49104633,49107624,49107821	49085636,49086561,49090353,49090520,49098491,49098704,49101471,49102185,49104735,49107712,49108605	0.923077
NCI_H460_cytosolic_fraction	chr6	28354137	28354206	28354205	-	High_confidence	173	177	534	18.524612	7.327313	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324736	28354195	ZSCAN31|ENST00000396838.6	-	28324736,28327382,28329302,28336789,28337755,28341745,28353861,28354130	28326854,28327533,28329714,28336943,28337893,28341792,28353952,28354195	0.895131
NCI_H460_cytosolic_fraction	chr3	123508900	123508932	123508931	-	RAMPAGE_only	9	10	23	0.797877	3.368042	chr3	123508744	123509100	LTR|ERVL-MaLR|MLT1A	-	chr3	123494515	123585077	HACD2|NM_198402.3	-	123494515,123500514,123502559,123528385,123567761,123582211,123584872	123494970,123500693,123502681,123528474,123567780,123582329,123585077	0.869565
NCI_H460_cytosolic_fraction	chr12	104287705	104287726	104287706	+	High_confidence	17	25	44	1.526373	5.106603	chr12	104287727	104287918	SINE|MIR|MIR	+	chr12	104287367	104348644	TXNRD1|ENST00000524698.5	+	104287367,104288930,104311289,104313244,104315776,104318912,104319469,104321090,104325336,104326346,104327514,104331533,104334236,104339138,104348352	104287431,104289040,104311412,104313317,104315896,104319055,104319585,104321316,104325429,104326423,104327671,104331641,104334332,104339273,104348644	0.909091
NCI_H460_cytosolic_fraction	chrX	111126591	111126615	111126591	+	RAMPAGE_only	2	2	6	0.208142	2.584963	chrX	111126479	111126673	SINE|MIR|MIRc	+	chrX	111123103	111131514	STRG.33966.8	+	111123103,111124250	111123278,111131514	1.000000
NCI_H460_cytosolic_fraction	chr17	36499087	36499131	36499087	-	High_confidence	2	2	19	0.659115	3.614369	chr17	36498869	36499061	SINE|MIR|MIRb	-	chr17	36495932	36499344	MYO19|ENST00000620567.1	-	36495932,36498265,36499074	36496406,36498559,36499344	0.947368
NCI_H460_cytosolic_fraction	chr21	25733490	25733526	25733525	-	RAMPAGE_only	16	22	52	1.803895	2.714715	chr21	25733247	25733535	SINE|Alu|AluY	+	chr21	25724479	25734904	ATP5PF|ENST00000400094.5	-	25724479,25725225,25729630,25734332,25734852	25724677,25725350,25729801,25734375,25734904	0.980769
NCI_H460_cytosolic_fraction	chr4	101033949	101034002	101033949	-	High_confidence	15	15	54	1.873275	4.883976	chr4	101033618	101033903	LINE|L1|L1MB8	-	chr4	101024327	101033995	STRG.8913.7	-	101024327,101032266,101033922	101026061,101032364,101033995	0.981481
NCI_H460_cytosolic_fraction	chr5	140698018	140698033	140698032	+	RAMPAGE_only	3	3	7	0.242832	2.584963	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140691682	140699248	HARS2|ENST00000642452.1	+	140691682,140693590,140693934,140694184,140695507,140695737,140696028,140696520,140696942,140697163,140697568,140697931,140698492	140691756,140693665,140694054,140694280,140695633,140695845,140696201,140696614,140697070,140697406,140697685,140698078,140699248	0.857143
NCI_H460_cytosolic_fraction	chr6	148527075	148527079	148527078	+	RAMPAGE_only	18	20	46	1.595753	5.058303	chr6	148526867	148527135	SINE|Alu|AluY	-	chr6	148524840	148552049	STRG.12893.2	+	148524840,148525290,148527452,148531525,148532796,148533770,148534750,148540442,148543679,148546014,148548294	148524882,148525365,148527596,148531661,148532966,148533980,148534901,148540556,148544818,148546146,148552049	0.934783
NCI_H460_cytosolic_fraction	chr15	52100532	52100544	52100538	-	High_confidence	68	105	360	12.488502	7.269089	chr15	52100279	52100861	LTR|ERVL|MER73	-	chr15	52056674	52100523	AC023906.5|ENST00000558607.1	-	52056674,52100469	52057255,52100523	0.705556
NCI_H460_cytosolic_fraction	chr12	6582139	6582145	6582143	-	High_confidence	2	5	8	0.277522	2.807355	chr12	6581880	6582102	SINE|Alu|AluSx1	-	chr12	6570190	6581343	CHD4|ENST00000644652.1	-	6570190,6570868,6573073,6577784,6578028,6578408,6578845,6580581,6581043,6581290	6570693,6571032,6573269,6577917,6578137,6578546,6578917,6580699,6581173,6581343	0.625000
NCI_H460_cytosolic_fraction	chr18	12419866	12419892	12419888	+	High_confidence	5	5	16	0.555045	4.000000	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12419891	12427322	PRELID3A|ENST00000589952.5	+	12419891,12420324,12421539,12427040,12427220	12419947,12420493,12421629,12427111,12427322	0.625000
NCI_H460_cytosolic_fraction	chr6	137738904	137738905	137738904	-	High_confidence	108	110	118	4.093454	5.127281	chr6	137738750	137738945	SINE|MIR|MIRc	-	chr6	137730169	137738983	LINC02539|ENST00000419220.1	-	137730169,137738708	137730597,137738983	0.940678
NCI_H460_cytosolic_fraction	chr6	116058794	116058827	116058826	-	High_confidence	14	14	29	1.006018	4.250752	chr6	116058628	116058931	SINE|Alu|AluY	+	chr6	115931155	116058760	STRG.12654.3	-	115931155,115943019,115944243,115956451,115967550,115968575,116003876,116058560	115942625,115943185,115944425,115956610,115967719,115968739,116003998,116058760	0.827586
NCI_H460_cytosolic_fraction	chr1	166850111	166850144	166850134	+	RAMPAGE_only	2	3	8	0.277522	2.500000	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
NCI_H460_cytosolic_fraction	chr13	113187420	113187464	113187444	-	High_confidence	8	8	38	1.318231	4.517021	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.947368
NCI_H460_cytosolic_fraction	chr12	104287671	104287674	104287673	+	High_confidence	3	4	7	0.242832	2.584963	chr12	104287561	104287720	SINE|MIR|MIRc	-	chr12	104287367	104348644	TXNRD1|ENST00000524698.5	+	104287367,104288930,104311289,104313244,104315776,104318912,104319469,104321090,104325336,104326346,104327514,104331533,104334236,104339138,104348352	104287431,104289040,104311412,104313317,104315896,104319055,104319585,104321316,104325429,104326423,104327671,104331641,104334332,104339273,104348644	0.857143
NCI_H460_cytosolic_fraction	chr2	227876116	227876117	227876116	+	High_confidence	4	4	7	0.242832	2.521641	chr2	227876013	227876319	SINE|Alu|AluY	-	chr2	227876373	227924341	STRG.5908.6	+	227876373,227885350,227889855,227891254,227898181,227903001,227904928,227906235,227907137,227918779,227921398,227923933	227876494,227885423,227890000,227891313,227898281,227903109,227905035,227906338,227907252,227918856,227921561,227924341	0.714286
NCI_H460_cytosolic_fraction	chr5	137560697	137560701	137560698	-	RAMPAGE_only	200	333	554	19.218417	7.697939	chr5	137560518	137560884	LTR|ERVL-MaLR|MLT1A0	-	chr5	136975297	137499348	SPOCK1|ENST00000394945.5	-	136975297,136979331,136985139,136988421,136992483,137067714,137112434,137140579,137267009,137498372,137499178	136978844,136979469,136985202,136988643,136992600,137067829,137112561,137140694,137267055,137498558,137499348	0.803249
NCI_H460_cytosolic_fraction	chr12	64439284	64439315	64439312	+	RAMPAGE_only	2	3	10	0.346903	2.646439	chr12	64439324	64439679	DNA|hAT-Charlie|Charlie4a	+	chr12	64404372	64448684	XPOT|NM_007235.4	+	64404372,64409961,64414906,64416697,64418045,64418875,64420069,64420352,64421234,64423004,64423181,64424598,64425037,64425337,64425814,64428050,64430048,64431537,64433413,64434506,64434793,64435626,64439243,64445074,64448104	64404804,64410095,64414989,64416754,64418115,64419094,64420254,64420521,64421471,64423043,64423244,64424723,64425182,64425457,64425909,64428120,64430287,64431823,64433603,64434623,64434909,64435674,64439315,64445131,64448684	0.900000
NCI_H460_cytosolic_fraction	chr16	4355592	4355593	4355592	-	High_confidence	558	569	569	19.738772	4.904886	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.950791
NCI_H460_cytosolic_fraction	chr4	70993073	70993074	70993073	+	High_confidence	11	11	12	0.416283	3.095795	chr4	70992983	70993102	SINE|MIR|MIR	+	chr4	70993438	71030914	DCK|ENST00000286648.9	+	70993438,70998066,71022366,71023558,71025815,71026664,71029351	70993926,70998182,71022560,71023706,71025931,71026755,71030914	0.916667
NCI_H460_cytosolic_fraction	chrX	147937499	147937526	147937505	+	RAMPAGE_only	2	2	13	0.450974	3.546594	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.538462
NCI_H460_cytosolic_fraction	chr14	103712932	103712933	103712932	-	High_confidence	8	9	12	0.416283	3.277613	chr14	103712860	103713310	LTR|ERV1|MER31A	+	chr14	103697617	103712104	XRCC3|ENST00000553264.5	-	103697617,103699132,103699363,103703172,103707002,103708521,103711032,103711465	103699017,103699179,103699576,103703327,103707215,103708659,103711245,103712104	0.916667
NCI_H460_cytosolic_fraction	chr9	100527225	100527226	100527225	+	RAMPAGE_only	58	58	82	2.844603	5.763476	chr9	100527228	100533251	LINE|L1|L1PA2	+	chr9	100516456	100577636	STRG.17093.4	+	100516456,100516674,100547743,100550094,100561396,100572517,100576515	100516571,100516771,100547892,100550160,100561520,100572676,100577636	0.865854
NCI_H460_cytosolic_fraction	chr2	107529485	107529512	107529485	+	High_confidence	3	3	12	0.416283	3.418296	chr2	107529145	107529729	LTR|ERV1|LTR9	-	chr2	107529486	107556326	LINC01886|ENST00000443205.1	+	107529486,107531647,107555132	107529699,107531779,107556326	0.666667
NCI_H460_cytosolic_fraction	chr21	18485883	18485884	18485883	-	High_confidence	7	8	8	0.277522	2.521641	chr21	18485714	18486071	LTR|ERVL-MaLR|THE1B	-	chr21	18365139	18485879	TMPRSS15|ENST00000422787.1	-	18365139,18372192,18379282,18380539,18383626,18397878,18398198,18485798	18365248,18372324,18379318,18380584,18383778,18397946,18398329,18485879	0.750000
NCI_H460_cytosolic_fraction	chr2	55268644	55268704	55268672	-	High_confidence	5	6	24	0.832567	3.938722	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	1.000000
NCI_H460_cytosolic_fraction	chr17	13671984	13671985	13671984	-	High_confidence	6	6	7	0.242832	2.584963	chr17	13671360	13673719	LINE|L1|L1PBa	+	chr17	13661717	13671435	STRG.27295.1	-	13661717,13671392	13665512,13671435	0.571429
NCI_H460_cytosolic_fraction	chr6	37423949	37423988	37423984	+	RAMPAGE_only	7	7	32	1.110089	4.456565	chr6	37423607	37424237	LTR|ERV1|LTR9	-	chr6	37433130	37481508	CMTR1|NM_015050.2	+	37433130,37435623,37443998,37446290,37450250,37451805,37453046,37453239,37458611,37459565,37461548,37461969,37462828,37471020,37471846,37472418,37473469,37474523,37475320,37476125,37477591,37478408,37479146,37480012	37433377,37435762,37444150,37446449,37450343,37451877,37453141,37453312,37458810,37459684,37461645,37462102,37463008,37471077,37471904,37472487,37473601,37474646,37475412,37476194,37477639,37478521,37479255,37481508	0.656250
NCI_H460_cytosolic_fraction	chr3	169812897	169812904	169812903	-	High_confidence	89	93	136	4.717879	5.111875	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.955882
NCI_H460_cytosolic_fraction	chr2	151704888	151704889	151704888	-	RAMPAGE_only	8	8	8	0.277522	2.500000	chr2	151698868	151704889	LINE|L1|L1PA2	-	chr2	151689197	151706931	NEB|ENST00000489048.1	-	151689197,151691863,151692058,151692260,151694322,151694521,151695577,151696636,151697147,151697349,151697543,151706880	151690825,151691968,151692166,151692362,151694436,151694629,151695682,151696735,151697252,151697457,151697648,151706931	1.000000
NCI_H460_cytosolic_fraction	chr2	142858594	142858596	142858594	+	RAMPAGE_only	2	4	6	0.208142	2.584963	chr2	142858476	142858649	LINE|L1|L1MEj	+	chr2	142877497	143055832	KYNU|ENST00000264170.8	+	142877497,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142877736,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143055832	1.000000
NCI_H460_cytosolic_fraction	chr6	31494709	31494735	31494730	+	High_confidence	5	7	15	0.520354	3.807355	chr6	31494550	31494850	SINE|Alu|AluSp	+	chr6	31494880	31511124	MICB|NM_001289160.1	+	31494880,31505616,31506142,31507021,31507399,31509781	31494995,31505871,31506430,31507300,31507531,31511124	0.866667
NCI_H460_cytosolic_fraction	chr14	73713284	73713304	73713303	-	RAMPAGE_only	3	3	8	0.277522	3.000000	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	1.000000
NCI_H460_cytosolic_fraction	chr2	227884647	227884667	227884647	+	RAMPAGE_only	1	1	8	0.277522	2.807355	chr2	227884034	227884651	LINE|L1|L1MDb	-	chr2	227888471	227924341	STRG.5908.5	+	227888471,227889855,227891254,227893794,227898181,227903001,227904928,227906235,227907137,227918779,227921398,227923933	227888601,227890000,227891313,227893917,227898281,227903109,227905035,227906338,227907252,227918856,227921561,227924341	0.750000
NCI_H460_cytosolic_fraction	chr3	108389854	108389886	108389863	-	High_confidence	17	18	70	2.428320	5.564858	chr3	108389784	108389875	LINE|L2|L2a	+	chr3	108380415	108389878	STRG.7115.1	-	108380415,108383594,108384686,108388969,108389813	108381559,108383729,108384782,108389074,108389878	1.000000
NCI_H460_cytosolic_fraction	chr17	59619888	59619923	59619894	+	High_confidence	730	991	4180	145.005388	6.413500	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.891627
NCI_H460_cytosolic_fraction	chrX	111126932	111126986	111126949	+	RAMPAGE_only	2	2	13	0.450974	3.418296	chrX	111126947	111127294	LINE|L1|L1ME4a	-	chrX	111123103	111131514	STRG.33966.8	+	111123103,111124250	111123278,111131514	0.923077
NCI_H460_cytosolic_fraction	chr1	39026110	39026131	39026110	+	High_confidence	3	3	11	0.381593	3.277613	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
NCI_H460_cytosolic_fraction	chr2	227888475	227888544	227888491	+	High_confidence	41	47	348	12.072219	6.973857	chr2	227888311	227888642	LTR|ERVL|ERV3-16A3_LTR	-	chr2	227888471	227924341	STRG.5908.5	+	227888471,227889855,227891254,227893794,227898181,227903001,227904928,227906235,227907137,227918779,227921398,227923933	227888601,227890000,227891313,227893917,227898281,227903109,227905035,227906338,227907252,227918856,227921561,227924341	0.879310
NCI_H460_cytosolic_fraction	chr1	156815425	156815505	156815425	-	High_confidence	33	46	132	4.579118	5.105098	chr1	156815315	156815398	LINE|CR1|L3b	-	chr1	156809660	156815411	SH2D2A|ENST00000486350.1	-	156809660,156813847,156814204,156815036	156809807,156814016,156814294,156815411	0.712121
NCI_H460_cytosolic_fraction	chr14	58456135	58456147	58456135	+	RAMPAGE_only	4	4	8	0.277522	2.807355	chr14	58455704	58456407	LINE|L1|L1M4	-	chr14	58442705	58537219	KIAA0586|ENST00000538571.6	+	58442705,58443953,58448339,58450578,58453349,58456701,58457758,58458472,58459842,58460985,58465834,58467734,58470612,58472198,58474606,58477122,58482512,58487006,58487886,58488620,58490163,58492143,58498782,58508554,58512521,58537006	58442880,58444175,58448493,58450746,58453473,58456810,58457979,58458545,58460070,58461160,58466029,58467922,58470723,58472279,58474797,58477241,58482712,58487166,58488109,58488874,58490240,58492275,58498960,58508709,58512627,58537219	0.875000
NCI_H460_cytosolic_fraction	chr17	5441960	5441987	5441960	-	RAMPAGE_only	2	2	12	0.416283	2.918296	chr17	5441885	5442241	SINE|Alu|AluSz6	-	chr17	5440911	5469060	DHX33|NM_020162.3	-	5440911,5448808,5450202,5450806,5453579,5453820,5455159,5455996,5460938,5462318,5463528,5468570	5444513,5448895,5450406,5450934,5453668,5453980,5455271,5456182,5461109,5462546,5463689,5469060	1.000000
NCI_H460_cytosolic_fraction	chr6	13794224	13794271	13794241	-	RAMPAGE_only	39	39	103	3.573099	4.269365	chr6	13794117	13794268	SINE|Alu|FLAM_C	-	chr6	13787133	13801345	STRG.11562.4	-	13787133,13789381,13791877,13793893,13798832,13800340,13801287	13787957,13790864,13791992,13793947,13798904,13800382,13801345	0.980583
NCI_H460_cytosolic_fraction	chr7	36420727	36420744	36420743	+	High_confidence	3	3	8	0.277522	3.000000	chr7	36420775	36420884	LINE|L2|L2b	+	chr7	36420223	36426034	ANLN|ENST00000446635.5	+	36420223,36420611,36421856,36422632,36423816,36424544,36424685,36425701,36426014	36420314,36420744,36421992,36422809,36423943,36424593,36424742,36425740,36426034	0.625000
NCI_H460_cytosolic_fraction	chr7	6590246	6590270	6590246	+	High_confidence	2	2	11	0.381593	3.121928	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.545455
NCI_H460_cytosolic_fraction	chr16	56492744	56492759	56492750	-	RAMPAGE_only	9	9	18	0.624425	3.947703	chr16	56492672	56493104	LINE|L1|L1MC5	+	chr16	56470402	56497802	BBS2|ENST00000564459.5	-	56470402,56484760,56485589,56496966,56497742	56470614,56484867,56485738,56497079,56497802	0.555556
NCI_H460_cytosolic_fraction	chr3	17739373	17739397	17739373	-	RAMPAGE_only	1	1	7	0.242832	2.584963	chr3	17739251	17739387	DNA|hAT-Charlie|Charlie18a	+	chr3	17157161	17740907	TBC1D5|ENST00000253692.11	-	17157161,17166766,17167748,17185108,17214206,17238162,17258505,17291894,17307991,17372074,17374470,17374628,17376524,17383912,17403180,17404693,17404871,17406417,17428449,17508473,17623848,17739342	17161256,17166928,17167828,17185208,17214370,17238419,17258591,17292001,17308134,17372247,17374540,17374679,17376613,17384015,17403248,17404768,17404961,17406526,17428519,17508605,17623913,17740907	0.714286
NCI_H460_cytosolic_fraction	chr12	31959160	31959167	31959160	+	High_confidence	3	3	8	0.277522	2.521641	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31981060	KIAA1551|ENST00000540924.5	+	31959407,31960776,31980877	31959491,31960871,31981060	0.750000
NCI_H460_cytosolic_fraction	chr2	9422919	9422971	9422970	-	High_confidence	8	8	28	0.971328	4.430632	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9412268	9423087	ITGB1BP1|ENST00000467606.5	-	9412268,9414177,9418625,9422965	9412405,9414256,9418732,9423087	0.571429
NCI_H460_cytosolic_fraction	chr16	14310060	14310074	14310073	+	RAMPAGE_only	4	6	13	0.450974	2.584963	chr16	14310041	14310153	SINE|MIR|MIRb	+	chr16	14302691	14326510	MIR193BHG|ENST00000641175.1	+	14302691,14326012	14302812,14326510	0.769231
NCI_H460_cytosolic_fraction	chr9	94094654	94094658	94094657	+	RAMPAGE_only	7	7	12	0.416283	3.022055	chr9	94089082	94095103	LINE|L1|L1PA2	-	chr9	94084463	94109854	PTPDC1|ENST00000288976.3	+	94084463,94085250,94087830,94088144,94095316,94097320,94101565,94104274,94107827	94084768,94085422,94087911,94088263,94095454,94098579,94101751,94104385,94109854	0.916667
NCI_H460_cytosolic_fraction	chr21	31660706	31660707	31660706	+	High_confidence	8	8	8	0.277522	2.750000	chr21	31660601	31660772	DNA|hAT-Charlie|MER5B	+	chr21	31659708	31668931	SOD1|ENST00000470944.1	+	31659708,31663789,31666448,31667257,31668470	31660708,31663886,31666518,31667375,31668931	1.000000
NCI_H460_cytosolic_fraction	chr18	63702757	63702795	63702766	+	High_confidence	2	3	10	0.346903	3.169925	chr18	63702673	63702809	SINE|Alu|AluJr	-	chr18	63702848	63723893	SERPINB11|ENST00000544088.5	+	63702848,63710178,63711334,63712564,63716034,63720012,63720830,63722994	63703006,63710361,63711394,63712693,63716152,63720155,63720986,63723893	0.800000
NCI_H460_cytosolic_fraction	chr22	28663281	28663284	28663283	+	High_confidence	5	7	10	0.346903	3.169925	chr22	28663283	28669315	LINE|L1|L1HS	+	chr22	28663499	28663994	STRG.32601.1	+	28663499	28663994	0.500000
NCI_H460_cytosolic_fraction	chr8	29770323	29770333	29770332	-	RAMPAGE_only	14	17	22	0.763186	4.011365	chr8	29770197	29770431	SINE|MIR|MIRb	+	chr8	29721253	29748109	LINC00589|ENST00000506121.3	-	29721253,29724876,29726155,29748014	29722151,29725019,29726423,29748109	0.545455
NCI_H460_cytosolic_fraction	chr5	34918052	34918053	34918052	-	High_confidence	11	11	11	0.381593	2.663533	chr5	34918029	34918308	SINE|Alu|AluJo	+	chr5	34908171	34918989	RAD1|ENST00000341754.8	-	34908171,34909257,34911553,34913469,34914694,34915415,34918051,34918231,34918521	34908948,34909356,34911812,34913578,34914961,34915626,34918136,34918297,34918989	1.000000
NCI_H460_cytosolic_fraction	chr10	5017969	5018033	5018014	-	High_confidence	40	42	223	7.735933	6.600173	chr10	5017765	5018153	LTR|ERVL-MaLR|MSTA	-	chr10	4987774	5018033	AKR1C2|NM_001354.5	-	4987774,4991830,4995318,4995755,4998624,4999199,5000549,5001513,5003751,5007406,5017899	4990038,4991913,4995484,4995865,4998747,4999277,5000666,5001681,5004014,5007506,5018033	0.869955
NCI_H460_cytosolic_fraction	chr18	46087018	46087066	46087042	-	RAMPAGE_only	4	5	22	0.763186	3.784942	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084149	46088696	ATP5F1A|ENST00000586523.1	-	46084149	46088696	0.954545
NCI_H460_cytosolic_fraction	chr6	26956513	26956545	26956513	-	High_confidence	2	2	9	0.312213	2.750000	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.555556
NCI_H460_cytosolic_fraction	chr6	33676324	33676335	33676324	+	High_confidence	7	7	12	0.416283	3.418296	chr6	33676226	33676457	SINE|MIR|MIRb	-	chr6	33676259	33696569	STRG.12003.3	+	33676259,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33683206,33684019,33684356,33684597,33684773,33685358,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33676513,33676932,33677089,33677629,33678543,33678839,33680133,33680454,33680680,33682644,33683397,33684168,33684465,33684688,33684943,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696569	1.000000
NCI_H460_cytosolic_fraction	chr2	96303166	96303331	96303166	-	RAMPAGE_only	6	6	80	2.775223	5.193943	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.987500
NCI_H460_cytosolic_fraction	chr2	215383327	215383364	215383357	-	High_confidence	6	6	28	0.971328	3.958229	chr2	215383001	215383307	SINE|Alu|AluSz	-	chr2	215379204	215383483	FN1|ENST00000490833.5	-	215379204,215380810,215382002,215382211,215383327	215379317,215381080,215382048,215382325,215383483	0.571429
NCI_H460_cytosolic_fraction	chr16	3530222	3530266	3530265	+	RAMPAGE_only	4	4	9	0.312213	3.169925	chr16	3530014	3530285	LTR|ERVL-MaLR|MSTD	-	chr16	3519968	3536470	CLUAP1|ENST00000572632.1	+	3519968,3523157,3530567,3532785,3536121	3520036,3523299,3530675,3532841,3536470	0.777778
NCI_H460_cytosolic_fraction	chr9	127451076	127451128	127451104	-	High_confidence	19	21	99	3.434338	5.213095	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.989899
NCI_H460_cytosolic_fraction	chr1	45525078	45525098	45525089	-	RAMPAGE_only	5	5	14	0.485664	3.521641	chr1	45525004	45525139	LINE|L2|L2b	+	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.785714
NCI_H460_cytosolic_fraction	chrX	2174714	2174715	2174714	-	High_confidence	176	238	244	8.464429	5.555124	chrX	2174399	2174715	SINE|Alu|AluYc3	-	chrX	2174317	2174708	STRG.33089.1	-	2174317	2174708	0.934426
NCI_H460_cytosolic_fraction	chr5	112862377	112862412	112862377	+	High_confidence	12	14	35	1.214160	4.771143	chr5	112862040	112862465	LTR|ERV1|MER51A	-	chr5	112862361	112867724	SRP19|ENST00000506987.1	+	112862361,112864456,112864620,112867403	112862583,112864528,112864732,112867724	0.857143
NCI_H460_cytosolic_fraction	chr15	101626825	101626839	101626825	-	High_confidence	5	6	10	0.346903	2.947703	chr15	101626450	101632475	LINE|L1|L1PA2	+	chr15	101603347	101626933	STRG.25538.1	-	101603347,101626447	101606035,101626933	0.600000
NCI_H460_cytosolic_fraction	chr14	83639697	83639745	83639697	-	High_confidence	2	2	19	0.659115	3.530493	chr14	83639298	83645330	LINE|L1|L1PA3	+	chr14	83611218	83639493	STRG.24064.1	-	83611218,83639273	83611315,83639493	0.789474
NCI_H460_cytosolic_fraction	chr1	67792079	67792142	67792105	-	RAMPAGE_only	23	24	77	2.671152	5.602933	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701465	67833436	STRG.1229.2	-	67701465,67707593,67777457,67833316	67705576,67707712,67777507,67833436	0.792208
NCI_H460_cytosolic_fraction	chr15	53684596	53684662	53684661	-	High_confidence	54	57	313	10.858059	6.540376	chr15	53684199	53690229	LINE|L1|L1PA3	+	chr15	53515162	53684627	STRG.24933.1	-	53515162,53523217,53597078,53609512,53613665,53615425,53665571,53684145	53517754,53523322,53597274,53609592,53613757,53616243,53665768,53684627	0.996805
NCI_H460_cytosolic_fraction	chr4	188109522	188109567	188109566	-	High_confidence	11	11	87	3.018055	5.701227	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188091372	188109603	STRG.9544.2	-	188091372,188097060,188097323,188099034,188101055,188104836,188105179,188109242	188091941,188097161,188097346,188099175,188101250,188104932,188105587,188109603	1.000000
NCI_H460_cytosolic_fraction	chr10	115435385	115435421	115435385	+	High_confidence	15	19	106	3.677170	6.125686	chr10	115435292	115435573	LTR|ERVL-MaLR|MSTD	+	chr10	115435432	115948966	STRG.18956.1	+	115435432,115461940,115467173,115469171,115519262,115549457,115727247,115847876,115944657	115435483,115462035,115467252,115469329,115519324,115549536,115727355,115847991,115948966	0.905660
NCI_H460_cytosolic_fraction	chr1	75376223	75376254	75376223	-	RAMPAGE_only	3	3	11	0.381593	3.277613	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.818182
NCI_H460_cytosolic_fraction	chr5	163461745	163461758	163461757	+	RAMPAGE_only	4	5	11	0.381593	2.646439	chr5	163461512	163461798	SINE|Alu|AluYc	+	chr5	163460656	163491941	HMMR|ENST00000358715.3	+	163460656,163463855,163464722,163467703,163469640,163471184,163471362,163473178,163473378,163474056,163475457,163478683,163482641,163483019,163483267,163484068,163490389,163491111	163460738,163463954,163464802,163467748,163469829,163471271,163471463,163473253,163473557,163474205,163475672,163478800,163482788,163483172,163483367,163484245,163490552,163491941	0.545455
NCI_H460_cytosolic_fraction	chr6	111518126	111518139	111518131	-	High_confidence	46	46	126	4.370976	6.295589	chr6	111517845	111518203	LINE|L2|L2a	+	chr6	111505324	111518127	STRG.12641.3	-	111505324,111510754,111518025	111507851,111510900,111518127	0.746032
NCI_H460_cytosolic_fraction	chr11	17282810	17282831	17282810	+	RAMPAGE_only	2	2	12	0.416283	3.277613	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.833333
NCI_H460_cytosolic_fraction	chr15	21273363	21273364	21273363	-	High_confidence	6	7	9	0.312213	2.750000	chr15	21273139	21273669	LTR|ERVL|LTR33A_	+	chr15	20644731	21273301	STRG.24407.1	-	20644731,20669467,20671112,21262566,21268379,21270768,21273132	20646461,20669637,20671268,21262899,21268484,21270924,21273301	0.666667
NCI_H460_cytosolic_fraction	chr19	17935094	17935095	17935094	+	High_confidence	8	8	8	0.277522	3.000000	chr19	17934905	17935211	SINE|Alu|AluJr	-	chr19	17935095	17943985	CCDC124|NM_138442.3	+	17935095,17936409,17942655,17943260,17943507	17935191,17936579,17942845,17943375,17943985	1.000000
NCI_H460_cytosolic_fraction	chr2	29130347	29130425	29130347	-	High_confidence	43	45	115	3.989383	5.106306	chr2	29130249	29130396	LTR|ERV1|LTR109A2	-	chr2	29127033	29130470	STRG.3724.1	-	29127033,29130127	29127814,29130470	0.765217
NCI_H460_cytosolic_fraction	chr19	45424375	45424385	45424380	-	High_confidence	3	3	13	0.450974	3.418296	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	0.846154
NCI_H460_cytosolic_fraction	chr14	50766368	50766400	50766368	-	High_confidence	7	7	14	0.485664	3.467720	chr14	50766057	50766321	SINE|MIR|MIR	-	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.928571
NCI_H460_cytosolic_fraction	chr2	38083053	38083078	38083053	+	High_confidence	2	3	7	0.242832	2.807355	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.714286
NCI_H460_cytosolic_fraction	chr17	50271485	50271488	50271485	+	High_confidence	25	27	49	1.699824	4.890021	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
NCI_H460_cytosolic_fraction	chr6	137792775	137792791	137792775	-	High_confidence	5	6	18	0.624425	3.794653	chr6	137792705	137792907	LTR?|LTR?|MamRep605	-	chr6	137730169	137792835	LINC02539|ENST00000645996.1	-	137730169,137784731,137792747	137730597,137784856,137792835	0.611111
NCI_H460_cytosolic_fraction	chr19	53865343	53865393	53865392	+	High_confidence	4	4	25	0.867257	3.969002	chr19	53865313	53865624	SINE|Alu|AluSx	-	chr19	53865352	53874094	STRG.30909.6	+	53865352,53869753,53873527	53865737,53869838,53874094	0.880000
NCI_H460_cytosolic_fraction	chr8	61725847	61725848	61725847	-	RAMPAGE_only	21	22	23	0.797877	4.201841	chr8	61725647	61725942	LTR|ERVL-MaLR|MLT1A1	-	chr8	61623709	61714640	ASPH|NM_032466.3	-	61623709,61633682,61637946,61638321,61642887,61643385,61643944,61644599,61646749,61651049,61653567,61680967,61684038,61714268	61626280,61633727,61638003,61638363,61642920,61643433,61644001,61644632,61646878,61651124,61653660,61681036,61684188,61714640	0.739130
NCI_H460_cytosolic_fraction	chr11	95466073	95466084	95466083	+	High_confidence	12	12	23	0.797877	4.106603	chr11	95465992	95466384	LTR|ERVL-MaLR|MLT1J2	+	chr11	95466095	95484351	STRG.20396.1	+	95466095,95474932,95478348,95480809,95481850	95466236,95475093,95478458,95480929,95484351	0.869565
NCI_H460_cytosolic_fraction	chr2	130428509	130428553	130428519	-	High_confidence	15	16	54	1.873275	4.856703	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046259.1	-	130416749,130419070,130425090,130425913,130427703	130418298,130419245,130425158,130426038,130428546	0.962963
NCI_H460_cytosolic_fraction	chr20	56367518	56367531	56367518	+	RAMPAGE_only	2	2	7	0.242832	2.584963	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	0.857143
NCI_H460_cytosolic_fraction	chr5	140697942	140697953	140697942	+	RAMPAGE_only	2	2	8	0.277522	2.521641	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140691682	140699248	HARS2|ENST00000642452.1	+	140691682,140693590,140693934,140694184,140695507,140695737,140696028,140696520,140696942,140697163,140697568,140697931,140698492	140691756,140693665,140694054,140694280,140695633,140695845,140696201,140696614,140697070,140697406,140697685,140698078,140699248	0.875000
NCI_H460_cytosolic_fraction	chr9	39810023	39810118	39810033	-	High_confidence	239	239	662	22.964968	5.480253	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803493	39810013	STRG.16625.2	-	39803493,39809485,39809730	39803859,39809615,39810013	0.950151
NCI_H460_cytosolic_fraction	chr2	10120434	10120452	10120434	+	High_confidence	91	103	143	4.960711	6.226584	chr2	10120422	10120535	SINE|Alu|FLAM_C	+	chr2	10120733	10121065	RRM2|ENST00000607140.1	+	10120733	10121065	0.762238
NCI_H460_cytosolic_fraction	chr2	218398232	218398233	218398232	+	High_confidence	11	11	16	0.555045	3.640224	chr2	218398216	218398343	SINE|MIR|MIRb	+	chr2	218398255	218404418	CTDSP1|ENST00000491064.5	+	218398255,218401563,218402113,218402348,218403034,218403231,218404296	218398332,218401712,218402215,218402405,218403127,218403417,218404418	0.500000
NCI_H460_cytosolic_fraction	chr1	67791706	67791754	67791731	-	RAMPAGE_only	104	107	411	14.257707	6.251141	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701465	67833436	STRG.1229.2	-	67701465,67707593,67777457,67833316	67705576,67707712,67777507,67833436	0.973236
NCI_H460_cytosolic_fraction	chr12	71118213	71118279	71118233	-	High_confidence	21	24	147	5.099472	5.435516	chr12	71118072	71124103	LINE|L1|L1PA2	+	chr12	71110214	71118247	STRG.21753.2	-	71110214,71115849,71118069	71113245,71115958,71118247	0.897959
NCI_H460_cytosolic_fraction	chrX	23782622	23782650	23782622	-	High_confidence	1	1	7	0.242832	2.584963	chrX	23782563	23782777	DNA|hAT-Charlie|Charlie1	-	chrX	23772991	23782956	AC131011.1|ENST00000366134.2	-	23772991,23782567,23782884	23773510,23782648,23782956	0.571429
NCI_H460_cytosolic_fraction	chr8	32927967	32927984	32927976	+	High_confidence	226	253	700	24.283199	6.952826	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927928	33044802	STRG.15319.2	+	32927928,33041634,33044366	32928093,33041771,33044802	0.892857
NCI_H460_cytosolic_fraction	chr1	153967484	153967512	153967486	+	High_confidence	23	35	86	2.983364	5.558652	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.546512
NCI_H460_cytosolic_fraction	chr13	43055406	43055412	43055406	+	RAMPAGE_only	63	74	122	4.232215	5.450815	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.696721
NCI_H460_cytosolic_fraction	chr20	2211247	2211258	2211257	-	RAMPAGE_only	3	3	9	0.312213	3.169925	chr20	2211128	2211433	LINE|RTE-BovB|MamRTE1	-	chr20	2206381	2207511	STRG.31184.1	-	2206381	2207511	0.777778
NCI_H460_cytosolic_fraction	chr4	188109344	188109391	188109378	-	High_confidence	21	23	92	3.191506	5.408233	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188091372	188109603	STRG.9544.2	-	188091372,188097060,188097323,188099034,188101055,188104836,188105179,188109242	188091941,188097161,188097346,188099175,188101250,188104932,188105587,188109603	0.956522
NCI_H460_cytosolic_fraction	chr1	197178634	197178670	197178639	-	RAMPAGE_only	5	5	15	0.520354	3.323231	chr1	197178615	197178732	LINE|L2|L2	+	chr1	197158441	197200521	ZBTB41|ENST00000467322.1	-	197158441,197172159,197175009,197175930,197176563,197178416,197180987,197188291,197190761,197191691,197199353	197160014,197172248,197175115,197176014,197176670,197178512,197181117,197188439,197190831,197191899,197200521	1.000000
NCI_H460_cytosolic_fraction	chr7	8304057	8304099	8304057	+	High_confidence	9	12	59	2.046727	5.133341	chr7	8298113	8304140	LINE|L1|L1PA3	-	chr7	8303753	8348023	STRG.13225.3	+	8303753,8340382,8341016,8343706	8304155,8340556,8343268,8348023	0.864407
NCI_H460_cytosolic_fraction	chr7	134432378	134432458	134432435	-	High_confidence	59	78	601	20.848861	5.757736	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.920133
NCI_H460_cytosolic_fraction	chr2	112624632	112624652	112624651	+	RAMPAGE_only	6	7	11	0.381593	3.459432	chr2	112624689	112624897	LINE|L2|L2a	+	chr2	112643063	112644406	STRG.4708.1	+	112643063,112643831	112643101,112644406	0.545455
NCI_H460_cytosolic_fraction	chr5	54310525	54310534	54310533	-	High_confidence	3	3	9	0.312213	3.000000	chr5	54310446	54310538	DNA|TcMar-Tigger|Tigger15a	+	chr5	53884783	54310573	ARL15|NM_019087.2	-	53884783,54113201,54154579,54171783,54310431	53886713,54113410,54154639,54171928,54310573	0.888889
NCI_H460_cytosolic_fraction	chr7	22725996	22726014	22726013	+	High_confidence	5	5	9	0.312213	3.000000	chr7	22725923	22726198	LTR|Gypsy?|LTR88b	+	chr7	22725883	22732002	IL6|ENST00000404625.5	+	22725883,22727178,22727443,22728692,22729513,22731405	22726258,22727281,22727634,22728806,22729660,22732002	0.777778
NCI_H460_cytosolic_fraction	chr4	158173024	158173058	158173024	-	High_confidence	176	190	269	9.331686	6.945832	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.862454
NCI_H460_cytosolic_fraction	chr1	176241605	176241653	176241605	+	RAMPAGE_only	3	3	17	0.589735	3.969816	chr1	176241083	176241796	DNA|TcMar-Tigger|MER44D	-	chr1	176265047	176845599	STRG.2496.1	+	176265047,176348395,176555406,176594523,176670969,176690136,176692125,176695737,176699099,176702606,176706358,176709982,176711834,176739625,176739979,176765665,176769606,176770966,176789808,176791346,176793559,176800060,176840172,176842379	176265118,176348734,176557241,176595595,176671115,176690430,176692318,176695859,176699589,176702735,176706450,176710176,176711981,176739761,176740196,176765837,176769784,176771180,176789977,176791482,176793669,176800132,176840271,176845599	0.764706
NCI_H460_cytosolic_fraction	chr6	2881285	2881286	2881285	-	High_confidence	21	22	22	0.763186	4.201841	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.863636
NCI_H460_cytosolic_fraction	chr22	18149865	18149979	18149868	+	High_confidence	65	66	365	12.661954	6.260094	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	STRG.32345.3	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157859,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.986301
NCI_H460_cytosolic_fraction	chr9	129488952	129488981	129488974	+	High_confidence	3	3	13	0.450974	3.546594	chr9	129488969	129489031	SINE|MIR|MIR3	-	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.846154
NCI_H460_cytosolic_fraction	chr14	28188840	28188889	28188840	-	RAMPAGE_only	3	3	18	0.624425	3.734522	chr14	28188442	28194470	LINE|L1|L1PA2	+	chr14	28074025	28074520	STRG.23383.1	-	28074025	28074520	0.611111
NCI_H460_cytosolic_fraction	chr5	150209143	150209208	150209176	+	High_confidence	14	15	49	1.699824	4.151449	chr5	150209029	150209231	SINE|MIR|MIRb	-	chr5	150209175	150210922	STRG.11030.1	+	150209175,150209405	150209234,150210922	0.959184
NCI_H460_cytosolic_fraction	chr2	11201313	11201327	11201313	-	RAMPAGE_only	2	2	8	0.277522	2.807355	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.875000
NCI_H460_cytosolic_fraction	chrX	47179127	47179163	47179162	+	High_confidence	2	3	9	0.312213	2.947703	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	1.000000
NCI_H460_cytosolic_fraction	chr3	151766780	151766781	151766780	+	High_confidence	172	221	242	8.395049	7.043922	chr3	151766184	151766973	LINE|L1|L1MC3	-	chr3	151766789	151791785	STRG.7538.7	+	151766789,151783831,151785481	151766854,151785421,151791785	0.549587
NCI_H460_cytosolic_fraction	chr8	9188188	9188299	9188203	+	High_confidence	47	49	342	11.864077	6.525134	chr8	9188163	9188460	LINE|L2|L2b	-	chr8	9188205	9202858	STRG.15070.2	+	9188205,9189347,9198923,9202498	9188443,9189586,9198991,9202858	0.906433
NCI_H460_cytosolic_fraction	chrX	24077116	24077342	24077116	+	RAMPAGE_only	8	10	124	4.301595	4.644443	chrX	24077071	24077365	SINE|Alu|AluSx	-	chrX	24054947	24078810	EIF2S3|NM_001415.3	+	24054947,24055614,24057420,24057632,24060087,24062415,24064200,24065997,24067963,24071557,24073090,24076721	24055037,24055678,24057548,24057754,24060182,24062574,24064335,24066092,24068108,24071727,24073263,24078810	0.991935
NCI_H460_cytosolic_fraction	chr8	26395611	26395612	26395611	+	High_confidence	19	21	26	0.901947	4.073270	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.615385
NCI_H460_cytosolic_fraction	chr4	122913316	122913318	122913317	-	High_confidence	10	14	21	0.728496	3.884184	chr4	122913129	122913485	LTR|ERVL-MaLR|MLT1A0	-	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	0.904762
NCI_H460_cytosolic_fraction	chr1	235110670	235110702	235110689	-	RAMPAGE_only	4	4	22	0.763186	3.984184	chr1	235110540	235110668	SINE|MIR|MIR3	-	chr1	235109335	235128936	TOMM20|ENST00000366607.4	-	235109335,235113767,235119817,235122325,235128594	235112108,235113910,235119899,235122372,235128936	0.909091
NCI_H460_cytosolic_fraction	chr3	47513313	47513364	47513332	-	High_confidence	6	6	34	1.179470	4.718488	chr3	47512991	47513291	SINE|Alu|AluSx	-	chr3	47501658	47513339	ELP6|ENST00000449409.5	-	47501658,47504329,47510183,47511147,47513222	47501851,47504448,47510254,47511226,47513339	0.529412
NCI_H460_cytosolic_fraction	chr6	149896010	149896011	149896010	-	High_confidence	4	4	7	0.242832	2.584963	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.857143
NCI_H460_cytosolic_fraction	chr6	140898419	140898430	140898421	-	High_confidence	79	133	328	11.378413	6.812865	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140898418	STRG.12831.1	-	140845957,140852818,140895802,140898187	140846304,140852924,140895930,140898418	0.716463
NCI_H460_cytosolic_fraction	chr8	66926374	66926477	66926450	-	High_confidence	35	44	158	5.481065	5.554783	chr8	66926412	66926708	SINE|Alu|AluY	-	chr8	66922017	66926398	SNHG6|ENST00000520619.1	-	66922017,66922323,66922613,66926197	66922114,66922392,66922725,66926398	0.860759
NCI_H460_cytosolic_fraction	chr2	230342367	230342469	230342405	+	High_confidence	15	15	109	3.781241	5.878691	chr2	230337069	230342513	LINE|L1|L1HS	-	chr2	230342420	230403730	STRG.5930.3	+	230342420,230357804,230358963,230361613,230370907,230371597,230383509,230385223,230388558,230389918,230392086,230393413,230396756,230400126,230400954,230401365,230401663,230402797	230342622,230357967,230359132,230361697,230370967,230371651,230383575,230385304,230388633,230390023,230392229,230393461,230396798,230400242,230401063,230401443,230401807,230403730	0.954128
NCI_H460_cytosolic_fraction	chr7	867957	867987	867986	+	High_confidence	15	18	49	1.699824	4.953213	chr7	867956	868098	LTR|ERVL|LTR41	-	chr7	868473	874902	SUN1|ENST00000497943.1	+	868473,872469,873214	869516,872562,874902	0.918367
NCI_H460_cytosolic_fraction	chr10	5291876	5291894	5291876	-	High_confidence	5	5	12	0.416283	3.459432	chr10	5291580	5291975	LTR|ERVL-MaLR|MSTD	+	chr10	5265095	5291595	STRG.17761.1	-	5265095,5271197,5272090,5275154,5277127,5278078,5282775,5283709,5284814,5285844,5291578	5266685,5271453,5273240,5275237,5277294,5278188,5282898,5283787,5284931,5286012,5291595	0.500000
NCI_H460_cytosolic_fraction	chr2	207566547	207566584	207566583	+	RAMPAGE_only	28	32	75	2.601771	5.568688	chr2	207566631	207566825	SINE|MIR|MIR	+	chr2	207560313	207596949	CREB1|ENST00000418081.5	+	207560313,207561118,207567462,207570178,207575271,207576630,207577109,207577504,207596913	207560372,207561160,207567563,207570321,207575454,207576693,207577224,207577655,207596949	0.893333
NCI_H460_cytosolic_fraction	chr14	59787319	59787348	59787319	-	RAMPAGE_only	2	3	10	0.346903	2.725481	chr14	59787276	59787498	SINE|MIR|MIRb	+	chr14	59596327	59870752	RTN1|ENST00000611068.1	-	59596327,59603064,59603211,59603851,59605367,59607284,59726918,59745707,59870389,59870643	59596787,59603123,59603258,59603921,59605506,59607492,59727668,59746481,59870420,59870752	0.800000
NCI_H460_cytosolic_fraction	chr5	111127490	111127509	111127490	+	RAMPAGE_only	4	4	15	0.520354	3.324863	chr5	111127475	111127556	SINE|MIR|MIR3	-	chr5	111092171	111130502	WDR36|ENST00000612402.4	+	111092171,111094919,111097078,111098721,111100588,111102344,111103785,111104176,111104696,111105294,111106056,111107293,111110188,111110787,111111169,111113073,111119012,111120495,111120995,111123804,111124107,111125607,111126733	111092618,111094947,111097179,111098839,111100721,111102399,111103918,111104352,111104817,111105360,111106143,111107439,111110303,111110953,111111278,111113153,111119120,111120593,111121141,111123924,111124189,111125795,111130502	0.933333
NCI_H460_cytosolic_fraction	chr4	122917834	122917835	122917834	-	RAMPAGE_only	4	4	7	0.242832	2.521641	chr4	122917758	122918008	LINE|L2|L2b	+	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	1.000000
NCI_H460_cytosolic_fraction	chr22	39320328	39320382	39320381	-	High_confidence	6	6	31	1.075399	4.323161	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.935484
NCI_H460_cytosolic_fraction	chr10	4944195	4944219	4944217	+	RAMPAGE_only	3	4	11	0.381593	2.846439	chr10	4944209	4944407	LTR|ERVL-MaLR|MSTA	+	chr10	4961859	4972747	STRG.17768.3	+	4961859,4963261,4965913,4966926,4968308,4968821,4972200,4972583	4961877,4963528,4966081,4967043,4968386,4968944,4972310,4972747	0.636364
NCI_H460_cytosolic_fraction	chr3	16697500	16697604	16697504	-	High_confidence	18	20	122	4.232215	5.640230	chr3	16697224	16697676	LTR|ERV1|LTR49-int	-	chr3	16586791	16697995	STRG.6352.1	-	16586791,16592049,16593654,16594532,16595313,16596749,16596987,16597489,16598086,16598451,16637884,16647573,16697378	16588713,16592148,16593768,16594583,16595385,16596889,16597051,16597541,16598178,16598598,16638085,16648612,16697995	0.959016
NCI_H460_cytosolic_fraction	chr20	8600698	8600726	8600707	+	High_confidence	20	21	136	4.717879	5.084889	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.750000
NCI_H460_cytosolic_fraction	chr19	58312275	58312319	58312275	+	RAMPAGE_only	2	2	13	0.450974	3.238901	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	1.000000
NCI_H460_cytosolic_fraction	chr4	25861722	25861747	25861746	+	High_confidence	18	22	44	1.526373	4.972549	chr4	25861658	25861751	DNA|hAT?|UCON80	+	chr4	25861829	25929545	SMIM20|ENST00000515764.2	+	25861829,25928312,25929153	25862153,25928369,25929545	0.863636
NCI_H460_cytosolic_fraction	chr5	123382127	123382145	123382127	-	RAMPAGE_only	2	2	9	0.312213	2.500000	chr5	123381886	123382104	LINE|L1|L1ME4b	-	chr5	123344884	123423303	CEP120|ENST00000306467.9	-	123344884,123349943,123364495,123372649,123377373,123378335,123382110,123382736,123382985,123384950,123386517,123388431,123389923,123391109,123393299,123399135,123412398,123416009,123418358,123422949	123346753,123350089,123364594,123372772,123377535,123378428,123382200,123382889,123383082,123385133,123386667,123388606,123390140,123391337,123393497,123399284,123412540,123416124,123418515,123423303	0.888889
NCI_H460_cytosolic_fraction	chr10	69087432	69087437	69087432	+	High_confidence	17	17	29	1.006018	3.686458	chr10	69087249	69087558	SINE|Alu|AluSx	+	chr10	69087445	69104811	SRGN|NM_001321053.1	+	69087445,69088027,69097083,69103870	69087660,69088236,69097231,69104811	0.965517
NCI_H460_cytosolic_fraction	chr14	53217609	53217616	53217609	+	High_confidence	2	2	8	0.277522	2.521641	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217711	53687258	AL365295.1|ENST00000456100.5	+	53217711,53318030,53369451,53687198	53218055,53318138,53369501,53687258	0.500000
NCI_H460_cytosolic_fraction	chr7	152438189	152438231	152438230	+	High_confidence	10	13	42	1.456992	4.853056	chr7	152438083	152438663	DNA|TcMar-Tigger|Tigger20a	+	chr7	152438203	152442945	STRG.14912.1	+	152438203,152442294	152438309,152442945	0.809524
NCI_H460_cytosolic_fraction	chr6	33676245	33676247	33676246	+	High_confidence	10	18	27	0.936638	4.532665	chr6	33676226	33676457	SINE|MIR|MIRb	-	chr6	33676259	33696569	STRG.12003.3	+	33676259,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33683206,33684019,33684356,33684597,33684773,33685358,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33676513,33676932,33677089,33677629,33678543,33678839,33680133,33680454,33680680,33682644,33683397,33684168,33684465,33684688,33684943,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696569	1.000000
NCI_H460_cytosolic_fraction	chr7	8303981	8303990	8303984	+	High_confidence	4	4	9	0.312213	3.000000	chr7	8298113	8304140	LINE|L1|L1PA3	-	chr7	8303753	8348023	STRG.13225.3	+	8303753,8340382,8341016,8343706	8304155,8340556,8343268,8348023	0.777778
NCI_H460_cytosolic_fraction	chr17	78632110	78632134	78632110	-	High_confidence	2	3	6	0.208142	2.584963	chr17	78632006	78632221	DNA|hAT-Charlie|MER1A	+	chr17	78607927	78632104	LINC02081|ENST00000648757.1	-	78607927,78624191,78628317,78630031,78631918	78609113,78624315,78628438,78630430,78632104	0.833333
NCI_H460_cytosolic_fraction	chr17	355344	355381	355380	+	RAMPAGE_only	26	28	61	2.116107	5.502480	chr17	355237	355620	LTR|ERVL-MaLR|MLT1K	+	chr17	356732	357561	STRG.26942.1	+	356732	357561	0.737705
NCI_H460_cytosolic_fraction	chr11	64242611	64242620	64242619	+	High_confidence	7	7	18	0.624425	3.454822	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.888889
NCI_H460_cytosolic_fraction	chr2	153872155	153872168	153872155	+	High_confidence	3	3	11	0.381593	3.027169	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	1.000000
NCI_H460_cytosolic_fraction	chr6	106695404	106695429	106695404	+	High_confidence	3	3	9	0.312213	2.947703	chr6	106695360	106695850	LTR|ERVL-MaLR|MLT1G1	+	chr6	106695534	106699994	LINC02526|ENST00000424162.1	+	106695534,106696274,106699841	106695674,106696400,106699994	1.000000
NCI_H460_cytosolic_fraction	chr8	8244525	8244580	8244525	-	High_confidence	4	4	20	0.693806	3.884184	chr8	8244455	8244522	LTR|ERV1|MER57A-int	-	chr8	8237673	8244667	ALG1L13P|ENST00000523017.5	-	8237673,8238190,8239494,8240428,8241321,8242786,8244459	8237719,8238301,8239554,8240549,8241400,8242926,8244667	0.800000
NCI_H460_cytosolic_fraction	chr5	128082249	128082276	128082275	-	High_confidence	16	18	72	2.497700	5.164862	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127966734	128082881	LINC01184|ENST00000508353.5	-	127966734,128076946,128082734	127966928,128077093,128082881	0.611111
NCI_H460_cytosolic_fraction	chr15	75626304	75626305	75626304	-	High_confidence	8	9	11	0.381593	3.277613	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
NCI_H460_cytosolic_fraction	chrX	19349951	19349964	19349952	+	RAMPAGE_only	4	6	14	0.485664	3.807355	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19355317	19359025	PDHA1|ENST00000481733.1	+	19355317,19355685,19357651,19358915	19355504,19355757,19357719,19359025	0.500000
NCI_H460_cytosolic_fraction	chrX	20026429	20026460	20026429	-	High_confidence	6	7	28	0.971328	4.004344	chrX	20026328	20026400	LINE|L1|L1MB3	-	chrX	20021347	20025943	MAP7D2|ENST00000466145.1	-	20021347,20024950,20025680	20021549,20025083,20025943	0.928571
NCI_H460_cytosolic_fraction	chr3	51199048	51199060	51199048	+	RAMPAGE_only	3	3	8	0.277522	2.521641	chr3	51199048	51205178	LINE|L1|L1PA3	+	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.500000
NCI_H460_cytosolic_fraction	chrX	103684679	103684718	103684692	-	RAMPAGE_only	2	2	10	0.346903	2.947703	chrX	103684643	103684884	SINE|MIR|MIR	-	chrX	103675504	103686668	MORF4L2|ENST00000441076.6	-	103675504,103678498,103685170,103686630	103677051,103678651,103685260,103686668	0.800000
NCI_H460_cytosolic_fraction	chr3	9987139	9987153	9987152	+	High_confidence	6	6	15	0.520354	3.093069	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9987214	10003097	EMC3-AS1|ENST00000440568.1	+	9987214,9987814,9988711,10002716	9987264,9987905,9988747,10003097	0.600000
NCI_H460_cytosolic_fraction	chr17	47067487	47067513	47067498	-	High_confidence	96	107	415	14.396468	6.109727	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.891566
NCI_H460_cytosolic_fraction	chr4	168138384	168138428	168138384	+	RAMPAGE_only	3	3	20	0.693806	3.921928	chr4	168138260	168138460	LINE|L1|L1PB4	-	chr4	168165183	168187690	ANXA10|ENST00000507278.5	+	168165183,168177739,168177889,168179216,168181682,168184558,168187365	168165326,168177793,168177983,168179312,168181741,168184681,168187690	0.950000
NCI_H460_cytosolic_fraction	chr7	22725908	22725956	22725955	+	High_confidence	3	3	11	0.381593	3.277613	chr7	22725923	22726198	LTR|Gypsy?|LTR88b	+	chr7	22725883	22732002	IL6|ENST00000404625.5	+	22725883,22727178,22727443,22728692,22729513,22731405	22726258,22727281,22727634,22728806,22729660,22732002	1.000000
NCI_H460_cytosolic_fraction	chr9	129333903	129333927	129333926	+	High_confidence	3	4	10	0.346903	2.521928	chr9	129333713	129334014	LINE|L2|L2b	+	chr9	129333905	129347399	LINC01503|ENST00000436710.5	+	129333905,129338791,129341735,129347225	129334198,129338917,129342043,129347399	0.800000
NCI_H460_cytosolic_fraction	chr21	26405915	26405957	26405942	+	RAMPAGE_only	35	43	116	4.024073	6.266106	chr21	26405595	26406023	LTR|ERVL|LTR16	+	chr21	26390135	26471698	AP001596.1|ENST00000421771.1	+	26390135,26470750	26390265,26471698	0.560345
NCI_H460_cytosolic_fraction	chr12	110690004	110690018	110690004	-	High_confidence	2	2	10	0.346903	2.947703	chr12	110689979	110690416	LTR|ERVL-MaLR|MLT1D	-	chr12	110648685	110689812	HVCN1|NM_001256413.1	-	110648685,110650167,110651216,110655233,110661163,110688624,110689725	110649475,110650280,110651448,110655338,110661448,110688708,110689812	0.900000
NCI_H460_cytosolic_fraction	chr9	112803717	112803757	112803756	+	RAMPAGE_only	2	2	7	0.242832	2.807355	chr9	112798107	112804159	LINE|L1|L1HS	-	chr9	112750853	112874987	SNX30|NM_001012994.1	+	112750853,112804775,112817704,112830724,112836213,112838497,112850858,112864246,112868783	112751157,112804967,112817815,112830883,112836409,112838697,112850945,112864399,112874987	1.000000
NCI_H460_cytosolic_fraction	chr10	26675755	26675775	26675774	-	High_confidence	24	24	65	2.254868	5.400065	chr10	26675712	26675886	SINE|Alu|AluYc	+	chr10	26662951	26675910	STRG.17962.1	-	26662951,26668406,26675693	26664392,26668494,26675910	0.630769
NCI_H460_cytosolic_fraction	chr15	22262526	22262531	22262526	-	RAMPAGE_only	4	5	15	0.520354	3.807355	chr15	22262344	22262771	LINE|L1|L1MB7	-	chr15	22259537	22264730	STRG.24426.1	-	22259537,22261827,22262064,22262604	22259783,22261884,22262231,22264730	0.600000
NCI_H460_cytosolic_fraction	chr6	73802824	73802833	73802824	+	RAMPAGE_only	4	4	10	0.346903	2.947703	chr6	73802695	73802998	SINE|Alu|AluSq2	-	chr6	73722940	73810172	CD109|ENST00000649530.1	+	73722940,73723250,73730343,73736382,73756642,73758943,73762383,73762740,73763575,73765929,73766758,73766947,73768054,73771428,73780423,73781258,73782613,73783706,73785363,73787233,73788467,73792625,73803219,73806843,73808082,73809983	73723159,73723279,73730574,73736508,73756682,73759028,73762480,73762882,73763685,73766154,73766860,73767010,73768231,73771581,73780498,73781319,73782755,73783824,73785477,73787452,73788612,73792802,73803301,73807072,73808248,73810172	0.700000
NCI_H460_cytosolic_fraction	chr13	49495583	49495617	49495616	+	High_confidence	4	6	21	0.728496	3.536887	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495609	49528992	PHF11|NM_001040443.2	+	49495609,49506634,49513058,49518017,49520893,49522042,49523174,49524084,49526386,49528510	49496095,49506756,49513166,49518151,49520940,49522107,49523241,49524216,49526458,49528992	0.904762
NCI_H460_cytosolic_fraction	chr3	114624984	114625034	114625006	-	High_confidence	37	44	134	4.648498	4.839515	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.880597
NCI_H460_cytosolic_fraction	chr11	102615935	102615967	102615946	+	High_confidence	8	8	41	1.422302	3.343231	chr11	102615883	102616086	DNA|hAT-Tip100|MER115	-	chr11	102616827	102627830	STRG.20437.1	+	102616827,102626658,102627138,102627708	102617119,102626780,102627311,102627830	0.902439
NCI_H460_cytosolic_fraction	chr15	53541006	53541046	53541016	-	High_confidence	56	70	316	10.962130	5.612094	chr15	53540633	53546677	LINE|L1|L1PA2	+	chr15	53513741	53541080	WDR72|ENST00000614174.4	-	53513741,53523217,53540974	53517754,53523322,53541080	0.952532
NCI_H460_cytosolic_fraction	chr15	22262480	22262495	22262488	-	RAMPAGE_only	4	7	15	0.520354	3.521641	chr15	22262344	22262771	LINE|L1|L1MB7	-	chr15	22259537	22264730	STRG.24426.1	-	22259537,22261827,22262064,22262604	22259783,22261884,22262231,22264730	0.866667
NCI_H460_cytosolic_fraction	chr14	83639529	83639541	83639529	-	High_confidence	2	2	8	0.277522	2.807355	chr14	83639298	83645330	LINE|L1|L1PA3	+	chr14	83611218	83639493	STRG.24064.1	-	83611218,83639273	83611315,83639493	0.500000
NCI_H460_cytosolic_fraction	chr18	66566774	66566802	66566801	-	RAMPAGE_only	5	6	16	0.555045	3.773557	chr18	66566244	66566942	LINE|L2|L2	+	chr18	66532338	66572171	CDH19|ENST00000454642.3	-	66532338,66534985,66543970,66544718,66551093,66554404,66568415,66572009	66532712,66535107,66544224,66544903,66551258,66554524,66568710,66572171	0.875000
NCI_H460_cytosolic_fraction	chr13	106376561	106376576	106376569	+	High_confidence	6	6	15	0.520354	2.788450	chr13	106376298	106376573	SINE|5S-Deu-L2|AmnSINE1	-	chr13	106376562	106377792	LINC00460|NR_034119.1	+	106376562,106376866,106377199	106376665,106377084,106377792	0.800000
NCI_H460_cytosolic_fraction	chr19	35164189	35164245	35164244	+	High_confidence	3	3	16	0.555045	3.030639	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	1.000000
NCI_H460_cytosolic_fraction	chr7	23722775	23722827	23722775	+	High_confidence	11	11	31	1.075399	4.607264	chr7	23721816	23723200	LINE|L1|L1P2	-	chr7	23722108	23832513	STK31|ENST00000405627.7	+	23722108,23722319,23725877,23727240,23729090,23735537,23736903,23752716,23754314,23762800,23768994,23769639,23771004,23772146,23781418,23783582,23785477,23786507,23786837,23787979,23790823,23815143,23832135	23722187,23722480,23726411,23727315,23729249,23735896,23737078,23752832,23754474,23762923,23769174,23769756,23771124,23772278,23781520,23783663,23785603,23786633,23786924,23788129,23790946,23815212,23832513	0.806452
NCI_H460_cytosolic_fraction	chr7	106249685	106249800	106249761	-	RAMPAGE_only	7	9	75	2.601771	4.959855	chr7	106249585	106249780	DNA|hAT-Charlie|MER58A	-	chr7	106248284	106285192	NAMPT|NM_005746.2	-	106248284,106253016,106254363,106261587,106263391,106268463,106269153,106272529,106274945,106277022,106284827	106251193,106253151,106254504,106261707,106263617,106268600,106269312,106272658,106275049,106277179,106285192	0.986667
NCI_H460_cytosolic_fraction	chr1	91287034	91287065	91287053	-	High_confidence	9	9	54	1.873275	5.078045	chr1	91286649	91288366	LINE|L1|L1PA3	+	chr1	91286291	91286981	STRG.1397.1	-	91286291	91286981	0.814815
NCI_H460_cytosolic_fraction	chr5	69189857	69189878	69189872	+	High_confidence	2	2	9	0.312213	2.500000	chr5	69189833	69190009	SINE|MIR|MIRb	+	chr5	69189741	69209929	CENPH|ENST00000502689.1	+	69189741,69191794,69194646,69197052,69202505,69202918,69208195,69209706	69189768,69191850,69194695,69197109,69202569,69202970,69208359,69209929	0.666667
NCI_H460_cytosolic_fraction	chr1	222715266	222715267	222715266	+	RAMPAGE_only	25	25	26	0.901947	3.163074	chr1	222715165	222715305	DNA|hAT-Charlie|MER5A1	+	chr1	222713400	222735192	STRG.2983.1	+	222713400,222715144,222715683,222718924,222719262,222722418,222724091,222725449,222727167,222728742,222729619,222730026,222731356,222732627	222713416,222715269,222715800,222719031,222719359,222722514,222724164,222725555,222727257,222728828,222729701,222730177,222731516,222735192	0.961538
NCI_H460_cytosolic_fraction	chr13	110160158	110160159	110160158	+	RAMPAGE_only	4	7	7	0.242832	2.807355	chr13	110160160	110160466	SINE|Alu|AluYb8	+	chr13	110222498	110222808	STRG.23133.1	+	110222498	110222808	1.000000
NCI_H460_cytosolic_fraction	chr19	55280196	55280218	55280217	-	High_confidence	20	23	50	1.734514	3.755784	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
NCI_H460_cytosolic_fraction	chr1	84174501	84174502	84174501	+	RAMPAGE_only	10	10	11	0.381593	3.121928	chr1	84174125	84174565	LINE|L2|L2c	+	chr1	84178834	84184046	PRKACB|ENST00000467507.1	+	84178834,84182199,84184036	84179238,84182328,84184046	0.636364
NCI_H460_cytosolic_fraction	chr1	1655444	1655478	1655444	-	RAMPAGE_only	3	5	17	0.589735	3.452820	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.705882
NCI_H460_cytosolic_fraction	chr21	33931121	33931164	33931146	+	High_confidence	10	13	29	1.006018	3.730758	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.551724
NCI_H460_cytosolic_fraction	chr13	95740433	95740453	95740433	+	RAMPAGE_only	2	2	8	0.277522	3.000000	chr13	95733699	95740837	LINE|L1|L1PA2	-	chr13	95742642	95794988	STRG.23036.3	+	95742642,95757643,95760039,95760678,95763642,95763832,95785938,95787006,95790872	95742720,95757796,95760221,95760798,95763748,95763953,95786071,95787155,95794988	1.000000
NCI_H460_cytosolic_fraction	chr3	120327756	120327761	120327756	-	RAMPAGE_only	3	3	8	0.277522	2.521641	chr3	120327735	120328041	SINE|Alu|AluSx	-	chr3	120324508	120349339	LRRC58|ENST00000295628.3	-	120324508,120334861,120335824,120348743	120331408,120335139,120335953,120349339	0.875000
NCI_H460_cytosolic_fraction	chr9	129333854	129333874	129333854	+	High_confidence	1	1	8	0.277522	2.521641	chr9	129333713	129334014	LINE|L2|L2b	+	chr9	129333905	129347399	LINC01503|ENST00000436710.5	+	129333905,129338791,129341735,129347225	129334198,129338917,129342043,129347399	0.875000
NCI_H460_cytosolic_fraction	chr1	230539477	230539478	230539477	+	RAMPAGE_only	14	14	14	0.485664	3.521641	chr1	230539426	230541165	LTR|ERVL|HERV16-int	+	chr1	230642455	230693985	COG2|NM_007357.2	+	230642455,230659463,230660757,230663140,230664483,230668675,230669355,230671515,230674997,230678912,230683573,230685084,230686934,230688070,230688419,230690013,230691383,230693291	230642678,230659625,230660823,230663221,230664587,230668784,230669535,230671640,230675124,230679052,230683635,230685236,230687132,230688143,230688562,230690153,230691564,230693985	1.000000
NCI_H460_cytosolic_fraction	chr17	2975621	2975667	2975660	+	High_confidence	44	62	241	8.360359	6.836897	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975618	3008090	STRG.26972.1	+	2975618,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010	2975775,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008090	0.867220
NCI_H460_cytosolic_fraction	chr21	40383200	40383267	40383230	+	High_confidence	25	29	68	2.358939	5.248940	chr21	40383047	40383359	SINE|Alu|AluSx	+	chr21	40383083	40385358	DSCAM-AS1|NR_038899.1	+	40383083,40383505,40384578	40383408,40383584,40385358	0.955882
NCI_H460_cytosolic_fraction	chr13	109272198	109272203	109272202	+	RAMPAGE_only	58	63	91	3.156816	5.559645	chr13	109271794	109272374	LTR|ERV1|LTR9	+	chr13	109269633	109273838	AL161431.1|ENST00000618966.1	+	109269633	109273838	0.868132
NCI_H460_cytosolic_fraction	chr1	51963990	51963997	51963996	-	RAMPAGE_only	3	3	8	0.277522	2.521641	chr1	51963964	51964467	LINE|L2|L2-3_Crp	+	chr1	51907955	51990764	RAB3B|NM_002867.3	-	51907955,51933317,51937293,51976889,51990551	51920114,51933442,51937412,51977117,51990764	0.750000
NCI_H460_cytosolic_fraction	chr9	129488843	129488931	129488904	+	High_confidence	41	42	257	8.915403	5.368448	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.926070
NCI_H460_cytosolic_fraction	chr1	93181125	93181151	93181125	-	High_confidence	3	3	15	0.520354	3.106891	chr1	93181034	93181174	SINE|Alu|FLAM_C	+	chr1	93149741	93180728	TMED5|ENST00000370282.7	-	93149741,93156299,93160128,93180053	93154888,93156483,93160226,93180728	0.666667
NCI_H460_cytosolic_fraction	chr7	158433259	158433260	158433259	+	High_confidence	5	8	8	0.277522	3.000000	chr7	158432973	158433362	LINE|L1|L1ME3	-	chr7	158433360	158452754	STRG.14965.4	+	158433360,158443149,158444243	158433573,158443349,158452754	0.875000
NCI_H460_cytosolic_fraction	chr12	79045201	79045260	79045201	+	High_confidence	14	17	91	3.156816	6.183511	chr12	79039621	79045645	LINE|L1|L1PA2	-	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.846154
NCI_H460_cytosolic_fraction	chr10	63594784	63594835	63594825	+	RAMPAGE_only	5	6	25	0.867257	4.293661	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	0.880000
NCI_H460_cytosolic_fraction	chr1	176241725	176241726	176241725	+	RAMPAGE_only	7	7	11	0.381593	3.121928	chr1	176241083	176241796	DNA|TcMar-Tigger|MER44D	-	chr1	176265047	176845599	STRG.2496.1	+	176265047,176348395,176555406,176594523,176670969,176690136,176692125,176695737,176699099,176702606,176706358,176709982,176711834,176739625,176739979,176765665,176769606,176770966,176789808,176791346,176793559,176800060,176840172,176842379	176265118,176348734,176557241,176595595,176671115,176690430,176692318,176695859,176699589,176702735,176706450,176710176,176711981,176739761,176740196,176765837,176769784,176771180,176789977,176791482,176793669,176800132,176840271,176845599	0.727273
NCI_H460_cytosolic_fraction	chr4	138252212	138252232	138252230	-	RAMPAGE_only	144	169	474	16.443195	6.976958	chr4	138252132	138252402	SINE|Alu|AluSx1	-	chr4	138164093	138242349	SLC7A11|NM_014331.3	-	138164093,138179216,138180640,138182296,138183201,138185120,138214584,138219265,138223198,138232266,138236324,138241792	138172017,138179394,138180790,138182393,138183305,138185244,138214629,138219365,138223324,138232382,138236451,138242349	0.919831
NCI_H460_cytosolic_fraction	chr9	62897430	62897431	62897430	+	High_confidence	36	36	38	1.318231	3.704067	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897451	62903971	STRG.16693.2	+	62897451,62897849,62903605	62897734,62897979,62903971	0.921053
NCI_H460_cytosolic_fraction	chr15	52065229	52065239	52065238	+	RAMPAGE_only	5	5	9	0.312213	3.169925	chr15	52065281	52065363	LINE|L1|L1M1	+	chr15	52019921	52066265	STRG.24915.2	+	52019921,52045829,52049992,52058632,52061298,52063901	52020032,52047015,52050137,52058797,52061500,52066265	1.000000
NCI_H460_cytosolic_fraction	chr19	3575591	3575641	3575628	+	RAMPAGE_only	6	7	19	0.659115	3.221097	chr19	3575668	3575971	SINE|Alu|AluSx1	+	chr19	3572978	3579088	HMG20B|ENST00000488973.6	+	3572978,3573691,3575539,3576260,3576552,3576891,3577980,3578508	3573347,3574586,3575660,3576307,3576625,3577107,3578113,3579088	1.000000
NCI_H460_cytosolic_fraction	chr5	181247492	181247497	181247496	-	High_confidence	4	4	9	0.312213	2.750000	chr5	181247404	181247700	SINE|Alu|AluY	+	chr5	181238119	181247576	RACK1|ENST00000510199.5	-	181238119,181239066,181239486,181241491,181242173,181247123	181238239,181239177,181239582,181241639,181242345,181247576	0.888889
NCI_H460_cytosolic_fraction	chr17	76564160	76564208	76564177	+	RAMPAGE_only	3	3	17	0.589735	3.750000	chr17	76564146	76564423	SINE|Alu|AluSx	-	chr17	76557791	76565279	SNHG16|ENST00000590435.5	+	76557791,76558944,76561287,76563118,76563972	76557857,76559043,76561398,76563482,76565279	0.941176
NCI_H460_cytosolic_fraction	chr6	23228921	23228930	23228921	+	High_confidence	3	3	8	0.277522	2.807355	chr6	23227561	23229347	LINE|L1|L1PBa1	-	chr6	23228789	23408279	STRG.11617.2	+	23228789,23303872,23394803,23397253,23398929,23402940,23403863	23229052,23303926,23394937,23397478,23399122,23403123,23408279	0.750000
NCI_H460_cytosolic_fraction	chr8	140440745	140440756	140440745	-	RAMPAGE_only	3	3	13	0.450974	2.918296	chr8	140440580	140440783	LINE|L2|L2b	+	chr8	140405292	140435197	TRAPPC9|ENST00000521944.1	-	140405292,140435111	140405698,140435197	0.923077
NCI_H460_cytosolic_fraction	chr16	65230910	65230913	65230912	+	High_confidence	4	9	11	0.381593	3.277613	chr16	65230856	65231518	LTR|ERV1|HERVH-int	-	chr16	65231309	65255777	STRG.26459.6	+	65231309,65251723,65254603	65233403,65251869,65255777	0.727273
NCI_H460_cytosolic_fraction	chr8	61762464	61762510	61762490	-	High_confidence	15	17	100	3.469028	5.970015	chr8	61762175	61762546	DNA|TcMar-Tigger|MER6A	-	chr8	61759447	61762520	STRG.15594.1	-	61759447,61762421	61760597,61762520	0.540000
NCI_H460_cytosolic_fraction	chr2	230342099	230342141	230342140	+	High_confidence	15	16	90	3.122126	5.893813	chr2	230337069	230342513	LINE|L1|L1HS	-	chr2	230342092	230403730	STRG.5930.4	+	230342092,230357804,230358963,230361613,230370907,230371597,230383509,230385223,230388558,230389918,230392086,230393413,230396756,230400126,230400333,230401365,230401663,230402797	230342173,230357967,230359132,230361697,230370967,230371651,230383575,230385304,230388633,230390023,230392229,230393461,230396798,230400242,230401063,230401443,230401807,230403730	0.933333
NCI_H460_cytosolic_fraction	chr5	147869802	147869819	147869802	+	High_confidence	4	4	9	0.312213	3.000000	chr5	147869589	147869833	LTR|ERV1|LTR8	+	chr5	147870681	147882190	SCGB3A2|ENST00000504320.5	+	147870681,147881445,147882026	147870754,147881648,147882190	0.888889
NCI_H460_cytosolic_fraction	chr2	107748264	107748290	107748289	-	RAMPAGE_only	34	36	199	6.903367	6.239936	chr2	107748198	107748521	SINE|Alu|AluY	-	chr2	107633552	107650964	STRG.4599.1	-	107633552,107650075,107650719,107650942	107636299,107650163,107650800,107650964	0.592965
NCI_H460_cytosolic_fraction	chr6	125920614	125920615	125920614	+	RAMPAGE_only	27	32	34	1.179470	4.432620	chr6	125920573	125920708	SINE|Alu|AluJo	-	chr6	125919304	125931111	NCOA7|ENST00000444128.2	+	125919304,125920942,125922681,125927662,125928635	125919431,125921068,125922834,125927758,125931111	0.676471
NCI_H460_cytosolic_fraction	chr11	75401044	75401064	75401063	+	High_confidence	4	5	11	0.381593	3.321928	chr11	75400877	75401180	SINE|Alu|AluY	-	chr11	75400694	75405628	RPS3|ENST00000530170.1	+	75400694,75401639,75402351,75404671,75405613	75400824,75401733,75402446,75404868,75405628	0.727273
NCI_H460_cytosolic_fraction	chr12	119179272	119179297	119179296	+	High_confidence	5	7	23	0.797877	3.754442	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.956522
NCI_H460_cytosolic_fraction	chr6	24658942	24659029	24658942	-	High_confidence	28	29	84	2.913984	5.631909	chr6	24658846	24659355	LTR|ERV1|LTR26C	+	chr6	24654377	24659172	TDP2|ENST00000478285.1	-	24654377,24657811,24658560	24654530,24657903,24659172	0.619048
NCI_H460_cytosolic_fraction	chr7	101308293	101308325	101308324	+	High_confidence	512	673	2934	101.781294	7.689263	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.898773
NCI_H460_cytosolic_fraction	chr10	6737489	6737492	6737491	+	High_confidence	28	62	73	2.532391	5.346533	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.890411
NCI_H460_cytosolic_fraction	chr20	50172544	50172590	50172571	+	High_confidence	17	17	83	2.879294	5.469820	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.831325
NCI_H460_cytosolic_fraction	chr16	30445873	30445877	30445873	-	High_confidence	16	25	45	1.561063	5.269631	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	1.000000
NCI_H460_cytosolic_fraction	chr1	174238845	174238907	174238845	+	High_confidence	3	3	33	1.144779	4.657882	chr1	174233266	174239293	LINE|L1|L1PA2	-	chr1	174238821	174244320	RABGAP1L|ENST00000529474.2	+	174238821,174241482,174242981,174244297	174238949,174241657,174243179,174244320	0.575758
NCI_H460_cytosolic_fraction	chr6	84138446	84138510	84138446	+	High_confidence	11	18	61	2.116107	5.014765	chr6	84138379	84138492	LINE|L1|L1MEc	+	chr6	84138466	84146278	STRG.12431.1	+	84138466,84139469,84144561,84145939	84138550,84139622,84144630,84146278	1.000000
NCI_H460_cytosolic_fraction	chr20	648143	648527	648463	-	RAMPAGE_only	14	14	301	10.441776	6.150471	chr20	648445	648597	SINE|MIR|MIRb	-	chr20	646614	653370	SRXN1|NM_080725.2	-	646614,652975	648917,653370	0.993355
NCI_H460_cytosolic_fraction	chr2	240022172	240022226	240022172	-	RAMPAGE_only	5	5	43	1.491682	2.656085	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.976744
NCI_H460_cytosolic_fraction	chr18	68790742	68790743	68790742	+	RAMPAGE_only	6	6	9	0.312213	2.947703	chr18	68784834	68790853	LINE|L1|L1PA2	-	chr18	68798079	69055189	CCDC102B|NM_024781.2	+	68798079,68836748,68838705,68846312,68874668,68897218,69010933,69054029	68798181,68837369,68838926,68846421,68874785,68897428,69011104,69055189	1.000000
NCI_H460_cytosolic_fraction	chr16	1963499	1963540	1963518	-	High_confidence	5	5	25	0.867257	3.834963	chr16	1963335	1963598	SINE|Alu|AluSx3	+	chr16	1962060	1963256	RPS2|ENST00000526586.6	-	1962060,1962735,1963148	1962656,1962909,1963256	0.960000
NCI_H460_cytosolic_fraction	chr12	54187904	54187908	54187904	-	High_confidence	10	11	20	0.693806	4.121928	chr12	54187852	54187993	LINE|L2|L2c	-	chr12	54181484	54187906	SMUG1|ENST00000505662.1	-	54181484,54183764,54187818	54182623,54183959,54187906	0.800000
NCI_H460_cytosolic_fraction	chr4	75127206	75127272	75127251	-	High_confidence	30	33	298	10.337705	5.076563	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75082018	75127255	STRG.8681.2	-	75082018,75084588,75127065	75082357,75084703,75127255	0.966443
NCI_H460_cytosolic_fraction	chr12	109885820	109885845	109885820	+	RAMPAGE_only	15	18	46	1.595753	4.969414	chr12	109885780	109885918	SINE|Alu|AluJr	-	chr12	109900263	109905027	TCHP|ENST00000537218.1	+	109900263,109903026,109903936,109904736	109900426,109903214,109904147,109905027	0.500000
NCI_H460_cytosolic_fraction	chr15	43133140	43133146	43133145	+	High_confidence	4	4	9	0.312213	2.500000	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133161	43146521	TMEM62|ENST00000565291.5	+	43133161,43134256,43135511,43138573,43146492	43133402,43134368,43135649,43138619,43146521	0.555556
NCI_H460_cytosolic_fraction	chr1	51908827	51908926	51908827	-	RAMPAGE_only	3	3	47	1.630443	4.094393	chr1	51908764	51908943	SINE|MIR|MIRc	+	chr1	51907955	51990764	RAB3B|NM_002867.3	-	51907955,51933317,51937293,51976889,51990551	51920114,51933442,51937412,51977117,51990764	1.000000
NCI_H460_cytosolic_fraction	chr2	55618850	55618903	55618850	-	High_confidence	5	7	27	0.936638	4.392747	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.851852
NCI_H460_cytosolic_fraction	chr17	78632047	78632067	78632066	-	High_confidence	7	11	29	1.006018	4.282484	chr17	78632006	78632221	DNA|hAT-Charlie|MER1A	+	chr17	78617396	78632067	LINC02081|ENST00000647957.1	-	78617396,78624191,78628317,78629620,78630031,78631989	78617626,78624315,78628438,78629822,78630430,78632067	0.931034
NCI_H460_cytosolic_fraction	chr10	104300405	104300430	104300429	+	RAMPAGE_only	3	3	6	0.208142	2.584963	chr10	104300336	104300430	LINE|L2|L2b	-	chr10	104275161	104304945	GSTO2|ENST00000369707.2	+	104275161,104277893,104279369,104297577,104299127	104275334,104278116,104279471,104297684,104304945	1.000000
NCI_H460_cytosolic_fraction	chr1	39026175	39026205	39026175	+	High_confidence	4	5	22	0.763186	4.021928	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.909091
NCI_H460_cytosolic_fraction	chr11	43881136	43881144	43881143	+	High_confidence	4	4	8	0.277522	2.521641	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.750000
NCI_H460_cytosolic_fraction	chr9	20732426	20732429	20732428	+	RAMPAGE_only	5	8	12	0.416283	3.584963	chr9	20732128	20733009	LINE|L2|L2b	-	chr9	20726350	20770133	FOCAD|ENST00000604103.1	+	20726350,20740235,20758089,20764873,20770031	20726432,20740340,20758191,20765073,20770133	1.000000
NCI_H460_cytosolic_fraction	chr12	109881399	109881415	109881414	-	High_confidence	12	14	45	1.561063	5.193707	chr12	109881109	109881661	LTR|ERV1|MER51B	+	chr12	109850942	109880488	GLTP|NM_016433.3	-	109850942,109855618,109857525,109858682,109880271	109852737,109855769,109857659,109858741,109880488	0.622222
NCI_H460_cytosolic_fraction	chr1	156815339	156815350	156815349	-	High_confidence	7	8	14	0.485664	2.950212	chr1	156815315	156815398	LINE|CR1|L3b	-	chr1	156809660	156815411	SH2D2A|ENST00000486350.1	-	156809660,156813847,156814204,156815036	156809807,156814016,156814294,156815411	0.714286
NCI_H460_cytosolic_fraction	chr19	46180862	46180879	46180862	-	High_confidence	464	475	1731	60.048882	5.217314	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46173426	46180949	STRG.30621.3	-	46173426,46173933,46179485,46180604,46180800	46173520,46174052,46179537,46180689,46180949	0.928943
NCI_H460_cytosolic_fraction	chr12	2798807	2798810	2798809	+	RAMPAGE_only	7	13	19	0.659115	3.932138	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2794952	2805423	FKBP4|ENST00000001008.5	+	2794952,2797137,2797728,2798705,2799087,2799849,2800038,2800391,2801116,2803150	2795244,2797282,2797871,2798826,2799244,2799940,2800122,2800577,2801356,2805423	1.000000
NCI_H460_cytosolic_fraction	chr4	80125459	80125489	80125488	-	High_confidence	3	3	10	0.346903	3.169925	chr4	80125429	80125705	LINE|L2|L2a	+	chr4	80069435	80125454	ANTXR2|ENST00000506286.1	-	80069435,80071582,80097499,80097736,80104462,80121147,80125385	80069507,80071654,80097629,80097961,80104537,80121277,80125454	0.700000
NCI_H460_cytosolic_fraction	chr5	43018760	43018772	43018771	-	High_confidence	22	22	36	1.248850	4.704511	chr5	43018573	43018883	SINE|Alu|AluY	+	chr5	43014728	43018811	LOC648987|NR_034086.1	-	43014728,43017073	43015150,43018811	1.000000
NCI_H460_cytosolic_fraction	chr20	37298760	37298761	37298760	+	RAMPAGE_only	32	33	33	1.144779	3.759353	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
NCI_H460_cytosolic_fraction	chr4	39305443	39305444	39305443	-	RAMPAGE_only	11	11	15	0.520354	3.456565	chr4	39305324	39305624	SINE|Alu|AluSx3	+	chr4	39300315	39303193	RFC1|ENST00000505077.1	-	39300315,39302277,39302499,39302736,39303059	39300414,39302376,39302595,39302874,39303193	0.800000
NCI_H460_cytosolic_fraction	chr13	109269539	109269567	109269544	-	High_confidence	49	62	372	12.904786	7.010366	chr13	109269432	109270085	LTR|ERV1|HERVH-int	+	chr13	109188363	109269545	STRG.23124.3	-	109188363,109267733,109268785	109189495,109267840,109269545	0.959677
NCI_H460_cytosolic_fraction	chr22	26484045	26484062	26484045	+	High_confidence	4	4	12	0.416283	2.625815	chr22	26484072	26484276	SINE|MIR|MIRb	+	chr22	26483883	26491938	SRRD|NM_001013694.2	+	26483883,26486022,26488028,26488389,26490043,26491024,26491462	26484099,26486063,26488288,26488488,26490198,26491070,26491938	0.750000
NCI_H460_cytosolic_fraction	chr7	94061498	94061505	94061498	+	High_confidence	3	3	7	0.242832	2.584963	chr7	94061392	94061581	SINE|MIR|MIRc	-	chr7	94061033	94068134	STRG.14129.3	+	94061033,94061455,94061768,94064425	94061158,94061625,94061864,94068134	0.857143
NCI_H460_cytosolic_fraction	chr4	74224090	74224127	74224126	+	High_confidence	18	20	63	2.185488	5.002268	chr4	74224092	74224549	LINE|L1|L1M7	-	chr4	74224067	74303097	STRG.8684.3	+	74224067,74225301,74281424,74299793,74301696	74224147,74225394,74281550,74299852,74303097	0.777778
NCI_H460_cytosolic_fraction	chr6	63563458	63563459	63563458	+	RAMPAGE_only	7	8	8	0.277522	2.807355	chr6	63563031	63563704	LINE|L2|L2a	+	chr6	63572011	63583587	AL135905.2|ENST00000370651.6	+	63572011,63576435,63578436,63578897,63579256,63580056	63572719,63576985,63578529,63579028,63579331,63583587	0.875000
NCI_H460_cytosolic_fraction	chr2	239273653	239273673	239273664	-	RAMPAGE_only	3	4	14	0.485664	3.521641	chr2	239273134	239273998	LINE|L1|L1MC5	+	chr2	239048168	239274765	STRG.6094.3	-	239048168,239053459,239054748,239066721,239068488,239081094,239082101,239084154,239087558,239090008,239095009,239102790,239108049,239111525,239115052,239126455,239134244,239134526,239139683,239144582,239156651,239163802,239176412,239189832,239236592,239274607	239053136,239053601,239054833,239066855,239068607,239081192,239082221,239084242,239087614,239090116,239095056,239102896,239108183,239111712,239115310,239126679,239134443,239134643,239139796,239144714,239156773,239163923,239176563,239190077,239236664,239274765	0.785714
NCI_H460_cytosolic_fraction	chr4	158090271	158090272	158090271	-	High_confidence	7	7	8	0.277522	2.807355	chr4	158084240	158090272	LINE|L1|L1PA2	-	chr4	158089685	158090038	STRG.9321.1	-	158089685	158090038	0.500000
NCI_H460_cytosolic_fraction	chr18	69947872	69947907	69947903	-	High_confidence	21	34	125	4.336286	6.073886	chr18	69947667	69947857	LINE|L2|L2a	-	chr18	69862955	69947853	CD226|NM_001303618.1	-	69862955,69867356,69873143,69895700,69946733,69947360	69864439,69867411,69873246,69896045,69947069,69947853	0.984000
NCI_H460_cytosolic_fraction	chr2	200887777	200887778	200887777	-	High_confidence	5	5	7	0.242832	2.521641	chr2	200887775	200888074	SINE|Alu|AluSx1	+	chr2	200871151	200887687	PPIL3|ENST00000415562.5	-	200871151,200876918,200881420,200882341,200885697,200887612	200871521,200877037,200881488,200882382,200885772,200887687	1.000000
NCI_H460_cytosolic_fraction	chr11	33141716	33141751	33141743	-	RAMPAGE_only	2	2	11	0.381593	2.721928	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33084583	33161465	CSTF3|ENST00000323959.8	-	33084583,33085712,33085894,33086987,33090531,33092270,33096305,33096834,33098689,33099033,33099607,33102176,33103106,33105566,33105882,33105997,33107902,33108385,33141666,33141884,33161298	33085289,33085773,33085989,33087141,33090727,33092340,33096408,33096978,33098764,33099150,33099717,33102339,33103184,33105693,33105917,33106064,33108000,33108418,33141762,33141986,33161465	0.909091
NCI_H460_cytosolic_fraction	chr9	74771090	74771115	74771092	-	High_confidence	11	23	50	1.734514	4.839727	chr9	74771024	74771564	LINE|L2|L2a	+	chr9	74722496	74771093	STRG.16766.1	-	74722496,74728238,74732684,74738406,74739366,74739722,74742560,74744094,74747888,74750663,74752276,74755352,74761695,74761998,74770868	74724746,74728345,74732736,74738612,74739449,74740009,74742626,74744145,74747914,74750722,74752368,74755473,74761808,74763134,74771093	0.940000
NCI_H460_cytosolic_fraction	chr18	39800293	39800314	39800293	-	High_confidence	34	36	126	4.370976	6.411582	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.523810
NCI_H460_cytosolic_fraction	chr3	33864052	33864104	33864052	+	RAMPAGE_only	2	2	15	0.520354	3.235926	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.933333
NCI_H460_cytosolic_fraction	chr21	8850067	8850068	8850067	+	RAMPAGE_only	4	4	6	0.208142	2.584963	chr21	8850073	8850241	SINE|MIR|MIRb	+	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	1.000000
NCI_H460_cytosolic_fraction	chr3	33838256	33838261	33838256	+	RAMPAGE_only	3	3	8	0.277522	2.750000	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.625000
NCI_H460_cytosolic_fraction	chr8	128560380	128560446	128560445	-	High_confidence	6	6	48	1.665134	5.171610	chr8	128560296	128560656	LINE|L2|L2c	+	chr8	128559713	128561126	LINC00824|ENST00000520824.1	-	128559713,128561069	128560548,128561126	0.833333
NCI_H460_cytosolic_fraction	chr2	202966023	202966038	202966037	+	RAMPAGE_only	10	10	23	0.797877	4.055958	chr2	202965833	202966297	LTR|ERVL-MaLR|MLT1F2	-	chr2	202969716	202971961	STRG.5620.1	+	202969716,202971504	202970062,202971961	0.826087
NCI_H460_cytosolic_fraction	chr7	76109091	76109114	76109091	-	High_confidence	6	6	17	0.589735	3.750000	chr7	76108929	76109272	LTR|ERV1|MER61A	-	chr7	76090430	76108779	GTF2IP7|ENST00000434037.1	-	76090430,76093296,76099439,76099897,76108230,76108434	76092166,76093401,76099514,76099956,76108309,76108779	0.529412
NCI_H460_cytosolic_fraction	chr18	976672	976685	976683	+	High_confidence	2	3	8	0.277522	2.521641	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976696	1159311	AP005328.1|ENST00000579835.5	+	976696,1061462,1133842,1137813,1159178	976895,1061535,1133894,1137864,1159311	0.500000
NCI_H460_cytosolic_fraction	chr22	29415465	29415490	29415465	-	High_confidence	7	8	25	0.867257	4.323856	chr22	29415160	29415598	LTR|ERV1|HERVE_a-int	-	chr22	29410567	29415455	STRG.32631.1	-	29410567,29412517,29415352	29411100,29412653,29415455	0.600000
NCI_H460_cytosolic_fraction	chr2	182928788	182928798	182928788	-	RAMPAGE_only	3	4	8	0.277522	2.750000	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182909114	183038472	NCKAP1|ENST00000361354.8	-	182909114,182926815,182928116,182928782,182930694,182934751,182935292,182942069,182952404,182952792,182953112,182956461,182957456,182962158,182964675,182967215,182976892,182978833,182981243,182982820,182983285,182986170,182989029,182994838,182995700,183001952,183002126,183002973,183003232,183023805,183037991	182925818,182926905,182928226,182928899,182930788,182934832,182935375,182942163,182952502,182952923,182953331,182956593,182957596,182962278,182964808,182967361,182976951,182978915,182981376,182982927,182983382,182986227,182989186,182994887,182995838,183002043,183002269,183003030,183003325,183023916,183038472	1.000000
NCI_H460_cytosolic_fraction	chr1	245816933	245816999	245816933	-	RAMPAGE_only	22	27	106	3.677170	5.541307	chr1	245816539	245822560	LINE|L1|L1PA3	+	chr1	245749366	245814411	SMYD3|ENST00000490322.1	-	245749366,245814341	245749664,245814411	0.839623
NCI_H460_cytosolic_fraction	chr20	36168012	36168082	36168081	+	High_confidence	8	8	18	0.624425	3.794653	chr20	36167948	36168192	LTR?|LTR?|MamRep605	-	chr20	36168097	36185335	STRG.31567.5	+	36168097,36173883,36175550,36177951,36178629,36182271,36185116	36168145,36173954,36175715,36178056,36178672,36182347,36185335	0.722222
NCI_H460_cytosolic_fraction	chr5	91313698	91313699	91313698	-	High_confidence	4	4	7	0.242832	2.584963	chr5	91313501	91313807	SINE|Alu|AluY	+	chr5	91310626	91313675	LUCAT1|ENST00000649539.1	-	91310626,91313077,91313637	91312495,91313229,91313675	0.714286
NCI_H460_cytosolic_fraction	chr3	11225963	11225999	11225963	+	High_confidence	9	10	50	1.734514	4.987059	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11225982	11263253	HRH1|NM_001098211.1	+	11225982,11259002	11226059,11263253	0.520000
NCI_H460_cytosolic_fraction	chr18	11859807	11859856	11859807	-	High_confidence	5	5	21	0.728496	3.546439	chr18	11859746	11860046	SINE|Alu|AluSx	-	chr18	11857177	11859816	STRG.28956.1	-	11857177,11859343	11858126,11859816	0.761905
NCI_H460_cytosolic_fraction	chrX	111126368	111126490	111126396	+	RAMPAGE_only	9	10	66	2.289559	4.738564	chrX	111126193	111126441	DNA|TcMar-Tigger|Tigger20a	+	chrX	111123103	111131514	STRG.33966.8	+	111123103,111124250	111123278,111131514	0.954545
NCI_H460_cytosolic_fraction	chr2	223051784	223051808	223051784	+	High_confidence	4	4	15	0.520354	3.640224	chr2	223051672	223051801	SINE|MIR|MIRc	-	chr2	223051813	223055637	KCNE4|ENST00000281830.3	+	223051813,223052807	223052274,223055637	0.866667
NCI_H460_cytosolic_fraction	chr18	63700853	63700886	63700853	+	RAMPAGE_only	6	9	43	1.491682	4.943593	chr18	63700789	63701086	LTR|ERVL|LTR16E2	+	chr18	63702303	63723893	SERPINB11|NM_080475.3	+	63702303,63702850,63710178,63711334,63712564,63716034,63720012,63720830,63722994	63702377,63703006,63710361,63711394,63712693,63716152,63720155,63720986,63723893	0.744186
NCI_H460_cytosolic_fraction	chr12	19946711	19946750	19946749	-	High_confidence	52	65	123	4.266905	5.517863	chr12	19946540	19946934	LTR|ERVL-MaLR|MLT1J2	-	chr12	19940265	19946784	STRG.20985.2	-	19940265,19945349,19946613	19941610,19945478,19946784	0.886179
NCI_H460_cytosolic_fraction	chr1	241632124	241632250	241632124	-	RAMPAGE_only	10	12	79	2.740532	5.028234	chr1	241632007	241632363	LTR|ERVL-MaLR|THE1B	+	chr1	241628863	241635930	CHML|NM_001821.3	-	241628863	241635930	1.000000
NCI_H460_cytosolic_fraction	chr3	8611896	8611934	8611912	-	High_confidence	2	2	12	0.416283	3.459432	chr3	8611524	8617535	LINE|L1|L1PA3	+	chr3	8573364	8611282	STRG.6197.1	-	8573364,8603243,8611227	8573874,8603379,8611282	0.750000
NCI_H460_cytosolic_fraction	chr4	124977	124986	124977	+	High_confidence	2	2	7	0.242832	2.584963	chr4	124971	125157	LTR|ERV1|MER57E3	-	chr4	124537	162701	STRG.8065.1	+	124537,125255,126847,131409,160911	124673,125296,130914,131505,162701	0.714286
NCI_H460_cytosolic_fraction	chr1	246689699	246689700	246689699	+	High_confidence	5	7	8	0.277522	2.521641	chr1	246689571	246689829	LTR|ERVL|LTR41	+	chr1	246690046	246691821	AL591848.2|ENST00000442712.1	+	246690046,246691467	246690214,246691821	0.500000
NCI_H460_cytosolic_fraction	chr17	7584839	7584863	7584862	+	High_confidence	16	18	26	0.901947	4.251629	chr17	7584709	7585017	SINE|Alu|AluSq2	+	chr17	7583894	7587938	MPDU1|ENST00000574558.1	+	7583894,7586691,7586898,7587160,7587425	7583965,7586777,7587017,7587271,7587938	0.653846
NCI_H460_cytosolic_fraction	chr16	20734761	20734780	20734770	-	RAMPAGE_only	6	6	18	0.624425	2.863826	chr16	20734689	20734805	DNA|hAT-Charlie|Charlie6	-	chr16	20733663	20741964	THUMPD1|NM_001304550.1	-	20733663,20736859,20737707,20738896,20741508	20736358,20737286,20737956,20739071,20741964	1.000000
NCI_H460_cytosolic_fraction	chr17	28719711	28719733	28719711	+	High_confidence	21	24	38	1.318231	4.063203	chr17	28719632	28719760	SINE|Alu|AluYh3	+	chr17	28719981	28724356	RPL23A|NM_000984.5	+	28719981,28720706,28722722,28723570,28723866	28720030,28720890,28722899,28723640,28724356	1.000000
NCI_H460_cytosolic_fraction	chr7	47786464	47786465	47786464	-	RAMPAGE_only	5	6	7	0.242832	2.584963	chr7	47786070	47786526	DNA|hAT-Charlie|Charlie13a	-	chr7	47774651	47948474	PKD1L1|NM_138295.3	-	47774651,47792626,47795988,47800648,47803209,47808246,47809472,47811816,47813120,47813930,47815333,47821075,47827349,47829424,47830039,47831216,47833089,47834338,47834966,47835132,47836920,47839445,47840460,47842961,47844994,47846878,47853126,47854881,47855154,47857604,47858672,47865215,47866418,47873898,47876096,47877488,47880727,47881908,47884597,47885685,47887989,47890541,47893877,47897987,47902378,47904377,47905156,47905842,47908076,47915431,47929203,47931103,47931935,47936845,47940192,47943395,47948396	47775166,47792797,47796150,47800879,47803344,47808387,47809577,47812051,47813293,47814014,47815457,47821186,47827468,47829601,47830124,47831352,47833252,47834385,47835039,47835243,47837094,47839662,47840567,47843169,47845078,47847071,47853227,47855039,47855265,47857832,47858885,47865272,47866614,47874010,47876217,47877631,47880805,47882085,47884657,47886054,47888150,47890763,47894059,47898194,47902511,47904617,47905325,47905962,47908250,47915599,47929526,47931321,47932056,47936958,47940317,47943511,47948474	0.571429
NCI_H460_cytosolic_fraction	chr14	105024993	105025019	105024993	-	RAMPAGE_only	5	5	21	0.728496	3.170818	chr14	105024875	105025057	LTR|ERVL-MaLR|MLT1H	-	chr14	105009572	105021148	CDCA4|ENST00000336219.3	-	105009572,105020998	105011935,105021148	1.000000
NCI_H460_cytosolic_fraction	chr9	128684459	128684493	128684459	-	RAMPAGE_only	15	17	79	2.740532	4.866874	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.658228
NCI_H460_cytosolic_fraction	chr15	32620162	32620165	32620164	+	RAMPAGE_only	4	6	8	0.277522	2.750000	chr15	32620202	32620425	SINE|Alu|AluJb	+	chr15	32615570	32637903	ARHGAP11A|ENST00000543522.5	+	32615570,32615804,32620107,32623491,32624172,32625079,32625486,32628727,32629594,32632978,32633932,32635776,32636256	32615607,32615918,32620178,32623588,32624426,32625243,32625633,32628802,32629762,32633108,32634041,32635915,32637903	1.000000
NCI_H460_cytosolic_fraction	chr16	30354709	30354710	30354709	-	High_confidence	11	11	11	0.381593	3.459432	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	1.000000
NCI_H460_cytosolic_fraction	chr2	55267603	55267629	55267619	-	High_confidence	2	2	8	0.277522	2.521641	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.625000
NCI_H460_cytosolic_fraction	chr3	129439765	129439791	129439765	-	High_confidence	1	1	7	0.242832	2.584963	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129431265	129439937	STRG.7331.6	-	129431265,129433097,129433849,129434061,129436460,129437719,129439729	129432606,129433247,129433984,129434136,129437308,129437950,129439937	0.857143
NCI_H460_cytosolic_fraction	chr7	54759973	54759974	54759973	-	High_confidence	7	7	8	0.277522	2.521641	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.875000
NCI_H460_cytosolic_fraction	chr1	188822562	188822587	188822583	-	High_confidence	15	15	41	1.422302	4.934184	chr1	188822207	188822962	LINE|L1|L1M4b	+	chr1	188739620	188822601	STRG.2625.3	-	188739620,188814464,188822181	188743561,188814611,188822601	0.536585
NCI_H460_cytosolic_fraction	chrX	47658623	47658635	47658634	-	High_confidence	3	3	9	0.312213	2.503258	chrX	47658369	47658606	SINE|MIR|MIR	-	chrX	47651800	47659107	UXT|ENST00000485641.5	-	47651800,47652080,47657182,47657781,47658829	47651895,47652144,47657290,47657863,47659107	1.000000
NCI_H460_cytosolic_fraction	chr6	111606470	111606471	111606470	-	High_confidence	9	9	12	0.416283	3.027169	chr6	111606274	111606582	SINE|Alu|AluY	+	chr6	111558939	111606278	TRAF3IP2|ENST00000340026.10	-	111558939,111562964,111566443,111567623,111572894,111575642,111580196,111591257,111601195,111605775	111559551,111563039,111566560,111567692,111572983,111575821,111580389,111592094,111601306,111606278	0.916667
NCI_H460_cytosolic_fraction	chr2	241235121	241235148	241235121	-	RAMPAGE_only	4	4	11	0.381593	3.321928	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241227286	241246864	STRG.6152.7	-	241227286,241229832,241230152,241230758,241233819,241235120,241235489,241236614,241238648,241239601,241239900,241242459,241246751	241228410,241229961,241230269,241230944,241233963,241235255,241235594,241236769,241238787,241239820,241240122,241242678,241246864	0.636364
NCI_H460_cytosolic_fraction	chr3	134485387	134485490	134485443	-	High_confidence	7	8	74	2.567081	5.411892	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	1.000000
NCI_H460_cytosolic_fraction	chr15	53684212	53684427	53684361	-	High_confidence	12	12	165	5.723897	6.246259	chr15	53684199	53690229	LINE|L1|L1PA3	+	chr15	53515162	53684627	STRG.24933.1	-	53515162,53523217,53597078,53609512,53613665,53615425,53665571,53684145	53517754,53523322,53597274,53609592,53613757,53616243,53665768,53684627	0.987879
NCI_H460_cytosolic_fraction	chr1	83182543	83182573	83182553	-	High_confidence	6	7	33	1.144779	4.696132	chr1	83182174	83188201	LINE|L1|L1PA2	+	chr1	83019397	83182595	STRG.1327.1	-	83019397,83182169	83021428,83182595	0.727273
NCI_H460_cytosolic_fraction	chr2	3536857	3536873	3536857	-	High_confidence	2	3	13	0.450974	3.418296	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531989	3536869	STRG.3431.1	-	3531989,3533107,3533710,3534112,3536723	3532310,3533190,3533848,3534255,3536869	0.923077
NCI_H460_cytosolic_fraction	chr12	53464773	53464834	53464773	+	RAMPAGE_only	4	6	33	1.144779	4.680758	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.818182
NCI_H460_cytosolic_fraction	chr4	102431159	102431248	102431179	-	High_confidence	53	66	211	7.319650	5.923849	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	STRG.8927.1	-	102418601,102419263,102419696,102431061	102418988,102419359,102419794,102431249	0.867299
NCI_H460_cytosolic_fraction	chr1	42959041	42959078	42959069	+	High_confidence	10	10	39	1.352921	4.362988	chr1	42959103	42959181	SINE|MIR|MIR3	+	chr1	42959048	42983358	SLC2A1-AS1|NR_033967.1	+	42959048,42970248,42973973,42983124	42959577,42970394,42974188,42983358	0.923077
NCI_H460_cytosolic_fraction	chr1	220090420	220090433	220090432	-	High_confidence	4	4	9	0.312213	2.725481	chr1	220090323	220090490	SINE|Alu|AluJr	-	chr1	220057483	220090462	BPNT1|ENST00000469520.6	-	220057483,220059685,220062756,220067301,220069383,220072849,220073966,220079726,220089685,220090286	220058992,220059791,220062954,220067393,220069432,220072957,220074071,220079854,220089951,220090462	1.000000
NCI_H460_cytosolic_fraction	chr8	82356057	82356074	82356073	-	RAMPAGE_only	4	4	13	0.450974	3.546594	chr8	82355904	82356177	SINE|Alu|AluY	+	chr8	82338604	82338856	STRG.15697.1	-	82338604	82338856	0.615385
NCI_H460_cytosolic_fraction	chr4	65625989	65626017	65625989	-	RAMPAGE_only	3	3	8	0.277522	3.000000	chr4	65625829	65626117	SINE|Alu|AluYc3	+	chr4	65319562	65669488	EPHA5|NM_001318761.1	-	65319562,65331972,65335931,65348053,65351388,65353041,65365016,65365931,65367356,65376997,65404373,65414283,65420440,65490376,65495387,65601640,65643362,65669436	65324219,65332128,65336125,65348203,65351598,65353103,65365202,65366057,65367424,65377063,65404479,65414443,65420565,65490712,65495543,65602304,65643427,65669488	0.500000
NCI_H460_cytosolic_fraction	chr9	135519344	135519432	135519372	+	RAMPAGE_only	39	41	215	7.458411	6.110443	chr9	135519212	135519671	LINE|L1|L1MEi	-	chr9	135521437	135526540	LCN1|NM_001252618.1	+	135521437,135522046,135523231,135523879,135524833,135525131,135526343	135521587,135522177,135523302,135523990,135524931,135525158,135526540	0.958140
NCI_H460_cytosolic_fraction	chr17	59651201	59651253	59651214	+	RAMPAGE_only	2	2	21	0.728496	4.121928	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.857143
NCI_H460_cytosolic_fraction	chr6	135813303	135813304	135813303	-	High_confidence	17	20	22	0.763186	4.021928	chr6	135813123	135813645	LTR|ERV1|LTR27	-	chr6	135803818	135813282	STRG.12774.1	-	135803818,135813091	135807318,135813282	0.590909
NCI_H460_cytosolic_fraction	chr7	56056395	56056412	56056411	+	RAMPAGE_only	3	3	6	0.208142	2.584963	chr7	56056444	56056752	SINE|Alu|AluSq2	+	chr7	56059543	56062059	CCT6A|ENST00000492618.5	+	56059543,56060268,56060806,56061746	56059640,56060416,56060940,56062059	0.833333
NCI_H460_cytosolic_fraction	chr1	212790861	212790883	212790882	+	High_confidence	8	8	18	0.624425	3.454822	chr1	212790640	212790952	SINE|Alu|AluY	+	chr1	212791402	212815175	STRG.2897.5	+	212791402,212795094,212796516,212797111,212802700,212804319,212804595,212807735,212812247,212815012	212791486,212795127,212796590,212797196,212802763,212804429,212804651,212807848,212812328,212815175	0.888889
NCI_H460_cytosolic_fraction	chr7	151472109	151472110	151472109	-	RAMPAGE_only	7	7	7	0.242832	2.521641	chr7	151472095	151472225	DNA|hAT-Blackjack|MER63B	+	chr7	151466011	151519924	RHEB|ENST00000262187.9	-	151466011,151470570,151471393,151471548,151477332,151484736,151490942,151519459	151467211,151470652,151471441,151471605,151477415,151484804,151491014,151519924	1.000000
NCI_H460_cytosolic_fraction	chr3	127595067	127595070	127595069	-	RAMPAGE_only	23	31	40	1.387611	4.871928	chr3	127594981	127595216	LTR|ERVL-MaLR|MLT1F	-	chr3	127576615	127598251	TPRA1|ENST00000490643.5	-	127576615,127576820,127576989,127579739,127580021,127591889,127594799,127598195	127576696,127576893,127577076,127579872,127580163,127591950,127594933,127598251	0.525000
NCI_H460_cytosolic_fraction	chrX	155073375	155073402	155073401	+	RAMPAGE_only	4	4	10	0.346903	2.503258	chrX	155073000	155073435	DNA|TcMar-Tigger|Tigger20a	-	chrX	155071531	155123036	BRCC3|ENST00000453705.1	+	155071531,155073373,155077169,155078615,155089262,155090783,155116056,155116710,155119998,155121222	155071654,155073431,155077289,155078703,155089351,155090839,155116188,155116754,155120168,155123036	0.900000
NCI_H460_cytosolic_fraction	chr4	41507641	41507664	41507641	+	RAMPAGE_only	2	2	12	0.416283	3.418296	chr4	41506728	41507652	LTR|ERVL|MER21C	-	chr4	41385978	41619362	LIMCH1|ENST00000446625.6	+	41385978,41494535,41524408,41598919,41603874,41605893,41613465,41619187	41386006,41494606,41524478,41599026,41603905,41606004,41613661,41619362	0.750000
NCI_H460_cytosolic_fraction	chr3	16697966	16698001	16697991	-	High_confidence	3	3	13	0.450974	3.418296	chr3	16697677	16698178	LTR|ERV1|MER4CL34	-	chr3	16586791	16697995	STRG.6352.1	-	16586791,16592049,16593654,16594532,16595313,16596749,16596987,16597489,16598086,16598451,16637884,16647573,16697378	16588713,16592148,16593768,16594583,16595385,16596889,16597051,16597541,16598178,16598598,16638085,16648612,16697995	0.923077
NCI_H460_cytosolic_fraction	chr1	42959441	42959486	42959478	+	High_confidence	4	4	28	0.971328	4.253434	chr1	42959490	42959595	LINE|L2|L2c	+	chr1	42959048	42983358	SLC2A1-AS1|NR_033967.1	+	42959048,42970248,42973973,42983124	42959577,42970394,42974188,42983358	1.000000
NCI_H460_cytosolic_fraction	chrX	97310606	97310613	97310611	+	RAMPAGE_only	13	23	33	1.144779	4.413910	chrX	97310220	97310731	LINE|L2|L2a	-	chrX	96685016	97469765	DIAPH2|ENST00000373054.5	+	96685016,96735757,96738585,96758153,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348117,97383908,97429649,97469693	96685190,96735790,96738762,96758258,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247841,97348280,97384044,97429745,97469765	0.969697
NCI_H460_cytosolic_fraction	chr18	7946875	7946898	7946878	+	High_confidence	19	20	85	2.948674	5.075392	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.694118
NCI_H460_cytosolic_fraction	chr5	77491284	77491291	77491284	-	High_confidence	3	3	9	0.312213	2.725481	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77453865	77491285	WDR41|ENST00000504895.5	-	77453865,77459061,77463094,77464760,77489456,77491192	77453928,77459124,77463226,77464809,77489572,77491285	0.555556
NCI_H460_cytosolic_fraction	chr14	63101968	63101991	63101987	-	High_confidence	19	19	54	1.873275	5.378230	chr14	63101880	63102189	SINE|Alu|AluY	+	chr14	62949817	63102037	KCNH5|ENST00000394964.3	-	62949817,62980871,62987071,63001330,63006365,63016830,63101799	62950559,62981264,62987187,63001459,63006472,63016954,63102037	0.814815
NCI_H460_cytosolic_fraction	chr4	87975041	87975083	87975082	+	High_confidence	4	6	21	0.728496	3.511085	chr4	87974877	87975087	SINE|MIR|MIR	-	chr4	87975649	87983411	SPP1|NM_001251830.1	+	87975649,87976881,87977058,87977661,87980045,87980392,87981474,87982491	87975800,87976949,87977097,87977850,87980126,87980434,87981798,87983411	0.714286
NCI_H460_cytosolic_fraction	chr4	41360098	41360117	41360098	+	High_confidence	2	2	8	0.277522	2.807355	chr4	41360058	41360135	LINE|L2|L2a	+	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.875000
NCI_H460_cytosolic_fraction	chr8	29735252	29735275	29735274	-	High_confidence	8	8	18	0.624425	3.734522	chr8	29735013	29735262	SINE|MIR|MIR	-	chr8	29673921	29735223	LINC00589|ENST00000518623.5	-	29673921,29677909,29726155,29735170	29674443,29678004,29726423,29735223	0.777778
NCI_H460_cytosolic_fraction	chr6	53617008	53617012	53617008	-	High_confidence	45	49	92	3.191506	5.771757	chr6	53616804	53617217	LTR|ERVL-MaLR|MSTA	-	chr6	53561288	53617007	AL033397.1|ENST00000502390.5	-	53561288,53564749,53569422,53573199,53616885	53564420,53564889,53569605,53573275,53617007	0.880435
NCI_H460_cytosolic_fraction	chr17	82081606	82081679	82081606	-	High_confidence	4	4	21	0.728496	3.784942	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.714286
NCI_H460_cytosolic_fraction	chrX	19064188	19064191	19064190	-	RAMPAGE_only	3	5	7	0.242832	2.521641	chrX	19063857	19064250	LTR|ERVL|LTR16C	-	chrX	18990009	19082743	ADGRG2|ENST00000340581.3	-	18990009,18994895,18996050,18998995,18999860,19002845,19004757,19006001,19006219,19009625,19010612,19013685,19019598,19021103,19023415,19023908,19027218,19028182,19030983,19035941,19037466,19040188,19068716,19082701	18991048,18995048,18996152,18999279,18999960,19003114,19004879,19006105,19006265,19009782,19010778,19014074,19019665,19021198,19023453,19023948,19027274,19028238,19031037,19035977,19037490,19040224,19068835,19082743	0.571429
NCI_H460_cytosolic_fraction	chr17	15644194	15644239	15644238	+	High_confidence	4	4	17	0.589735	3.875000	chr17	15644183	15644486	SINE|Alu|AluSz	-	chr17	15644229	15650448	STRG.27329.1	+	15644229,15649726	15644328,15650448	0.941176
NCI_H460_cytosolic_fraction	chr12	27716389	27716447	27716446	+	RAMPAGE_only	5	5	33	1.144779	4.040775	chr12	27716483	27716564	LINE|L2|L2	+	chr12	27710846	27755537	MRPS35|ENST00000542791.1	+	27710846,27755180	27710955,27755537	0.787879
NCI_H460_cytosolic_fraction	chr13	43053932	43053972	43053971	+	RAMPAGE_only	10	12	49	1.699824	3.750760	chr13	43052716	43054750	LINE|L1|L1PB1	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.938776
NCI_H460_cytosolic_fraction	chr1	75376280	75376289	75376280	-	RAMPAGE_only	2	4	6	0.208142	2.584963	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.833333
NCI_H460_cytosolic_fraction	chrX	111127591	111127619	111127591	+	RAMPAGE_only	4	6	31	1.075399	4.284684	chrX	111127556	111127927	LINE|RTE-X|L4_A_Mam	+	chrX	111123103	111131514	STRG.33966.8	+	111123103,111124250	111123278,111131514	1.000000
NCI_H460_cytosolic_fraction	chr13	67121076	67121095	67121076	+	High_confidence	4	4	21	0.728496	3.821928	chr13	67120999	67121128	LINE|L2|L2c	-	chr13	67121080	67156624	AL160254.1|ENST00000648561.1	+	67121080,67121255,67155990	67121128,67121325,67156624	0.666667
NCI_H460_cytosolic_fraction	chr6	2987953	2987975	2987974	+	RAMPAGE_only	4	4	14	0.485664	3.392747	chr6	2987907	2988156	LINE|L2|L2c	-	chr6	2999815	3019876	NQO2|NM_001290221.1	+	2999815,3002049,3003668,3004494,3006467,3010024,3012543,3015529,3016883,3019478	3000085,3002286,3003789,3004651,3006559,3010189,3012674,3015643,3016985,3019876	0.500000
NCI_H460_cytosolic_fraction	chr6	24817705	24817706	24817705	-	High_confidence	14	14	15	0.520354	3.521641	chr6	24811657	24817706	LINE|L1|L1HS	-	chr6	24804286	24817695	STRG.11651.1	-	24804286,24809716,24817609	24806473,24809807,24817695	0.933333
NCI_H460_cytosolic_fraction	chr12	122064308	122064376	122064375	+	High_confidence	145	151	473	16.408504	7.316943	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122064356	122070201	STRG.22333.1	+	122064356,122068027,122068288	122064682,122068191,122070201	0.725159
NCI_H460_cytosolic_fraction	chr3	84191075	84191095	84191094	-	RAMPAGE_only	4	4	9	0.312213	2.500000	chr3	84188584	84193036	LTR|ERV1|HERVH-int	-	chr3	84184583	84193172	STRG.7023.3	-	84184583,84192890	84188146,84193172	0.888889
NCI_H460_cytosolic_fraction	chr11	27499660	27499680	27499660	-	RAMPAGE_only	5	5	9	0.312213	2.750000	chr11	27499640	27499926	SINE|Alu|AluY	-	chr11	27494897	27506769	LIN7C|ENST00000524596.1	-	27494897,27499358,27501801,27506715	27498804,27499568,27501920,27506769	0.888889
NCI_H460_cytosolic_fraction	chr5	997307	997319	997318	-	High_confidence	3	4	8	0.277522	2.521641	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.875000
NCI_H460_cytosolic_fraction	chr10	97634099	97634109	97634108	-	High_confidence	3	5	11	0.381593	3.121928	chr10	97634006	97634308	SINE|Alu|AluJo	+	chr10	97614552	97634155	STRG.18730.2	-	97614552,97616677,97617207,97619586,97634004	97616411,97616787,97617322,97619683,97634155	0.727273
NCI_H460_cytosolic_fraction	chr7	77328188	77328207	77328188	-	High_confidence	4	4	11	0.381593	3.121928	chr7	77327964	77328168	SINE|MIR|MIRb	-	chr7	77310751	77328485	STRG.14078.4	-	77310751,77311840,77312100,77313487,77314369,77320724,77321332,77323646,77326211,77328165	77311449,77311940,77312202,77313549,77314489,77320819,77321403,77323742,77326273,77328485	0.909091
NCI_H460_cytosolic_fraction	chr19	47227131	47227226	47227220	-	High_confidence	4	4	23	0.797877	3.697846	chr19	47227045	47227213	SINE|MIR|MIR1_Amn	-	chr19	47221644	47227189	BBC3|ENST00000598636.1	-	47221644,47226563	47221918,47227189	0.913043
NCI_H460_cytosolic_fraction	chr14	26678880	26678901	26678882	+	High_confidence	16	31	83	2.879294	5.531666	chr14	26673315	26679374	LINE|L1|L1PA2	-	chr14	26679170	26806380	STRG.23375.1	+	26679170,26724747,26779794,26780481,26797913,26806235	26679398,26724794,26779879,26780618,26798030,26806380	0.650602
NCI_H460_cytosolic_fraction	chr3	128104807	128104852	128104807	-	RAMPAGE_only	2	2	16	0.555045	3.506891	chr3	128104760	128104822	LINE|CR1|L3	-	chr3	128081181	128100744	RUVBL1|ENST00000478892.1	-	128081181,128082482,128087705,128097299,128098881,128100594	128081409,128082574,128087844,128097498,128098945,128100744	0.875000
NCI_H460_cytosolic_fraction	chr10	84279967	84279968	84279967	+	High_confidence	45	48	56	1.942656	5.199619	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279979	84294659	LINC00858|ENST00000415469.5	+	84279979,84288223,84288593,84288974,84291406,84293245	84280065,84288420,84288780,84289044,84292137,84294659	0.500000
NCI_H460_cytosolic_fraction	chr4	98891290	98891330	98891329	-	High_confidence	5	7	16	0.555045	3.452820	chr4	98891322	98891802	LINE|L1|L1MB2	+	chr4	98881009	98890898	EIF4E|ENST00000505194.5	-	98881009,98884921,98887078,98887888,98890786	98881142,98885061,98887192,98887952,98890898	0.812500
NCI_H460_cytosolic_fraction	chr1	189149624	189149641	189149625	+	RAMPAGE_only	11	19	56	1.942656	4.635550	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	188905687	189603596	STRG.2634.1	+	188905687,189150541,189307728,189389824,189568328,189603482	188905926,189150759,189307878,189389879,189568395,189603596	0.589286
NCI_H460_cytosolic_fraction	chr8	75278479	75278574	75278573	-	High_confidence	6	6	54	1.873275	5.133396	chr8	75278367	75284402	LINE|L1|L1PA4	+	chr8	75223768	75278497	CASC9|ENST00000521147.1	-	75223768,75278356	75224358,75278497	0.648148
NCI_H460_cytosolic_fraction	chr18	34557929	34557989	34557929	+	High_confidence	8	9	44	1.526373	4.948896	chr18	34552378	34558395	LINE|L1|L1PA2	-	chr18	34557978	34820868	STRG.29092.3	+	34557978,34679467,34755975,34765960,34794036,34806218,34811958,34815908,34818163,34820790	34558135,34679592,34756043,34766041,34794250,34806304,34812113,34816014,34818330,34820868	0.772727
NCI_H460_cytosolic_fraction	chr12	76050925	76050926	76050925	-	RAMPAGE_only	6	6	6	0.208142	2.584963	chr12	76050731	76051020	SINE|Alu|AluJo	+	chr12	76049433	76053158	NAP1L1|ENST00000547969.5	-	76049433,76050530,76053090	76049785,76050653,76053158	0.500000
NCI_H460_cytosolic_fraction	chr3	84193141	84193142	84193141	-	High_confidence	1968	2244	2591	89.882527	4.949039	chr3	84193038	84193404	LTR|ERV1|LTR7	-	chr3	84184583	84193172	STRG.7023.3	-	84184583,84192890	84188146,84193172	0.986106
NCI_H460_cytosolic_fraction	chr15	65244454	65244455	65244454	-	RAMPAGE_only	6	7	9	0.312213	2.725481	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	1.000000
NCI_H460_cytosolic_fraction	chr1	243269684	243269685	243269684	+	High_confidence	8	9	12	0.416283	3.027169	chr1	243269606	243269808	LINE|L1|L1MDb	-	chr1	243269135	243271032	SDCCAG8|ENST00000491888.1	+	243269135,243270091,243270977	243269200,243270257,243271032	0.583333
NCI_H460_cytosolic_fraction	chr1	155058717	155058785	155058784	+	High_confidence	9	10	35	1.214160	4.479143	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	1.000000
NCI_H460_cytosolic_fraction	chr13	51080845	51080846	51080845	-	RAMPAGE_only	12	12	15	0.520354	3.906891	chr13	51078923	51080846	LINE|L1|L1PA6	-	chr13	50994510	51066157	GUCY1B2|NR_003923.2	-	50994510,51004252,51006699,51006989,51010072,51016180,51016915,51020397,51024099,51025333,51026701,51028207,51029593,51034002,51048219,51062820,51065950	50994811,51004576,51006909,51007141,51010227,51016327,51017064,51020718,51024316,51025437,51026813,51028404,51029693,51034159,51048314,51062894,51066157	0.533333
NCI_H460_cytosolic_fraction	chr8	75278367	75278368	75278367	+	High_confidence	7	7	9	0.312213	2.750000	chr8	75278367	75284402	LINE|L1|L1PA4	+	chr8	75278384	75278910	STRG.15642.1	+	75278384	75278910	0.666667
NCI_H460_cytosolic_fraction	chr12	19945913	19945928	19945913	-	High_confidence	3	4	8	0.277522	2.500000	chr12	19945684	19945964	LINE|L2|L2	+	chr12	19940265	19946784	STRG.20985.2	-	19940265,19945349,19946613	19941610,19945478,19946784	1.000000
NCI_H460_cytosolic_fraction	chr1	172040686	172040711	172040701	+	High_confidence	4	6	17	0.589735	3.452820	chr1	172040532	172041596	LINE|L2|L2c	-	chr1	172040702	172388729	STRG.2430.1	+	172040702,172042008,172044384,172048611,172068818,172081831,172092823,172131174,172253572,172308727,172379017,172387132,172388572	172040918,172042144,172044452,172048750,172068905,172081902,172092875,172131288,172253682,172308839,172379182,172387359,172388729	0.941176
NCI_H460_cytosolic_fraction	chr2	75239459	75239517	75239459	+	High_confidence	5	5	33	1.144779	4.490919	chr2	75238954	75239942	DNA|TcMar-Tigger|Tigger6a	+	chr2	75239184	75279681	STRG.4293.1	+	75239184,75276509,75278077	75239696,75276599,75279681	0.969697
NCI_H460_cytosolic_fraction	chr1	43361127	43361210	43361209	+	RAMPAGE_only	8	8	41	1.422302	4.303867	chr1	43361240	43361490	LINE|L2|L2	+	chr1	43359012	43363203	CDC20|ENST00000372462.1	+	43359012,43359489,43359724,43359968,43360192,43360498,43360732,43361119,43362194,43362950	43359396,43359638,43359821,43360097,43360389,43360593,43360961,43361245,43362312,43363203	0.926829
NCI_H460_cytosolic_fraction	chrX	71300001	71300460	71300459	+	RAMPAGE_only	27	37	783	27.162493	6.244118	chrX	71300434	71300519	SINE|Alu|AluSx	-	chrX	71291994	71301168	NONO|ENST00000490044.5	+	71291994,71294218,71296564,71296850,71297376,71297835,71298468,71298706,71299941	71293041,71294528,71296660,71297047,71297461,71297938,71298508,71298816,71301168	1.000000
NCI_H460_cytosolic_fraction	chr3	101466870	101466891	101466871	-	RAMPAGE_only	2	3	9	0.312213	3.000000	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.888889
NCI_H460_cytosolic_fraction	chr4	73104198	73104245	73104198	-	High_confidence	349	359	929	32.227274	7.658934	chr4	73103951	73104200	DNA|hAT-Charlie|Charlie2b	-	chr4	73077368	73104228	STRG.8652.7	-	73077368,73078641,73085248,73090666,73094078,73097116,73098072,73102375,73104002	73077533,73078890,73085446,73092300,73094228,73097272,73098520,73102547,73104228	0.958019
NCI_H460_cytosolic_fraction	chr11	123448944	123448995	123448974	-	High_confidence	18	20	59	2.046727	4.894631	chr11	123448923	123449355	LINE|L2|L2a	+	chr11	123435885	123448867	STRG.20660.1	-	123435885,123441670,123448747	123439636,123441792,123448867	0.644068
NCI_H460_cytosolic_fraction	chr2	227388626	227388647	227388646	+	RAMPAGE_only	6	6	10	0.346903	3.121928	chr2	227388456	227389374	DNA|hAT-Tip100|Zaphod	+	chr2	227377040	227392669	STRG.5882.1	+	227377040,227392177,227392476	227377081,227392284,227392669	1.000000
NCI_H460_cytosolic_fraction	chr1	15357262	15357308	15357262	+	High_confidence	3	3	19	0.659115	4.037401	chr1	15357224	15357265	SINE|MIR|MIRb	+	chr1	15357790	15364317	FHAD1|ENST00000483120.1	+	15357790,15360477,15362641,15363740	15358283,15360703,15362726,15364317	0.947368
NCI_H460_cytosolic_fraction	chr6	34757079	34757091	34757079	+	High_confidence	4	4	11	0.381593	2.732159	chr6	34757127	34757285	LINE|L2|L2a	+	chr6	34757093	34773857	SNRPC|NR_029472.1	+	34757093,34762594,34767907,34770290,34773445	34757551,34762703,34767997,34770395,34773857	1.000000
NCI_H460_cytosolic_fraction	chr5	72896554	72896555	72896554	+	RAMPAGE_only	5	5	7	0.242832	2.521641	chr5	72896587	72896884	SINE|Alu|AluSx1	+	chr5	72848102	72914388	TNPO1|NM_153188.2	+	72848102,72848384,72851243,72855773,72861807,72865595,72872638,72875614,72877227,72882466,72883063,72887069,72888077,72889785,72891809,72893138,72893376,72893615,72896457,72897055,72900005,72900973,72903708,72905302,72908708	72848251,72848498,72851319,72855923,72861914,72865729,72872720,72875737,72877346,72882527,72883232,72887222,72888303,72889957,72891896,72893246,72893535,72893703,72896556,72897151,72900081,72901073,72903783,72905445,72914388	0.571429
NCI_H460_cytosolic_fraction	chr7	158433356	158433368	158433367	+	High_confidence	46	48	113	3.920002	6.182006	chr7	158433347	158433470	LINE|L1|L1MEg	-	chr7	158433360	158452754	STRG.14965.4	+	158433360,158443149,158444243	158433573,158443349,158452754	0.761062
NCI_H460_cytosolic_fraction	chr2	38082945	38082993	38082992	+	High_confidence	4	7	21	0.728496	4.011365	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.857143
NCI_H460_cytosolic_fraction	chr11	108134308	108134315	108134314	+	RAMPAGE_only	5	5	11	0.381593	2.732159	chr11	108134362	108134663	SINE|Alu|AluSc	+	chr11	108138719	108140171	ACAT1|ENST00000534773.1	+	108138719,108140064	108139041,108140171	0.636364
NCI_H460_cytosolic_fraction	chr5	59093327	59093364	59093351	-	RAMPAGE_only	3	3	10	0.346903	3.121928	chr5	59092926	59093513	LINE|L1|HAL1	+	chr5	58974654	59039515	PDE4D|ENST00000515011.5	-	58974654,58975656,58976349,58977190,58988492,58989754,58990803,58991831,58993371,59038858	58975080,58975839,58976472,58977345,58988592,58989919,58990902,58992004,58993465,59039515	0.900000
NCI_H460_cytosolic_fraction	chr10	72217390	72217393	72217390	-	High_confidence	6	7	10	0.346903	2.846439	chr10	72217192	72217493	SINE|Alu|AluY	+	chr10	72096031	72217134	ASCC1|NR_045564.1	-	72096031,72128081,72133056,72152868,72161537,72196810,72203426,72210731,72213186,72216820	72097450,72128167,72133181,72152988,72161674,72196989,72203524,72210831,72213331,72217134	0.600000
NCI_H460_cytosolic_fraction	chr12	94996905	94996906	94996905	-	High_confidence	6	6	6	0.208142	2.584963	chr12	94996903	94997043	SINE|MIR|MIR3	+	chr12	94971331	94997447	NDUFA12|ENST00000550187.5	-	94971331,94994169,94997307	94971620,94994257,94997447	1.000000
NCI_H460_cytosolic_fraction	chr1	17755324	17755373	17755334	+	High_confidence	7	10	22	0.763186	3.916127	chr1	17755152	17755695	LTR|ERVL|LTR41	+	chr1	17755312	17827063	ACTL8|NM_030812.2	+	17755312,17822984,17825766	17755504,17823356,17827063	0.954545
NCI_H460_cytosolic_fraction	chr11	4129116	4129148	4129116	+	RAMPAGE_only	8	8	32	1.110089	4.542748	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.968750
NCI_H460_cytosolic_fraction	chr19	4576500	4576508	4576507	-	High_confidence	8	8	13	0.450974	3.584963	chr19	4576002	4576774	LINE|L2|L2a	+	chr19	4542590	4576491	STRG.29589.2	-	4542590,4546215,4546391,4548026,4548262,4550122,4550798,4552421,4554387,4554975,4555473,4555987,4556950,4557162,4558025,4558336,4576370	4544529,4546274,4546469,4548173,4548445,4550272,4550930,4552639,4554476,4555095,4555564,4556089,4557013,4557223,4558149,4558489,4576491	0.692308
NCI_H460_cytosolic_fraction	chr5	181173496	181173519	181173518	-	High_confidence	5	6	11	0.381593	3.321928	chr5	181173369	181173517	SINE|Alu|AluJb	-	chr5	181171684	181173486	STRG.11414.1	-	181171684	181173486	0.727273
NCI_H460_cytosolic_fraction	chr12	21937431	21937460	21937431	-	High_confidence	6	6	13	0.450974	3.392747	chr12	21937397	21937599	LINE|L2|L2b	-	chr12	21797388	21936694	ABCC9|NM_020297.3	-	21797388,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21882765,21887825,21894031,21895274,21906125,21908076,21910156,21910825,21912871,21915667,21916936,21925941,21933781,21936532	21801181,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21882873,21887934,21894174,21895315,21906288,21908211,21910312,21910978,21913066,21915910,21917103,21926063,21933923,21936694	1.000000
NCI_H460_cytosolic_fraction	chr15	101626561	101626577	101626561	-	RAMPAGE_only	1	1	7	0.242832	2.584963	chr15	101626450	101632475	LINE|L1|L1PA2	+	chr15	101545392	101561406	STRG.25531.1	-	101545392,101546217,101546921,101561243	101545848,101546273,101547010,101561406	0.571429
NCI_H460_cytosolic_fraction	chr8	66955118	66955119	66955118	-	High_confidence	14	14	19	0.659115	4.058814	chr8	66949103	66955119	LINE|L1|L1PA2	-	chr8	66947589	66955117	TCF24|ENST00000566129.1	-	66947589,66954978	66948164,66955117	0.526316
NCI_H460_cytosolic_fraction	chr3	135439859	135439862	135439861	-	High_confidence	13	16	21	0.728496	4.084184	chr3	135439148	135439860	LINE|L1|L1P1	-	chr3	135373794	135439822	AC092969.1|ENST00000459861.5	-	135373794,135379261,135379780,135439755	135374321,135379427,135379847,135439822	0.523810
NCI_H460_cytosolic_fraction	chr19	10577511	10577548	10577511	-	High_confidence	31	31	58	2.012036	5.098253	chr19	10577423	10577734	SINE|Alu|AluY	-	chr19	10572688	10577314	STRG.29786.2	-	10572688,10574416,10574903,10577197	10573088,10574492,10575029,10577314	0.965517
NCI_H460_cytosolic_fraction	chr10	6737341	6737433	6737414	+	High_confidence	36	36	219	7.597172	6.162220	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.840183
NCI_H460_cytosolic_fraction	chr9	134872635	134872636	134872635	-	High_confidence	9	10	10	0.346903	2.947703	chr9	134872476	134872826	LTR|ERVL-MaLR|THE1B	-	chr9	134819414	134872618	LOC101448202|NR_103451.2	-	134819414,134872548	134820209,134872618	0.800000
NCI_H460_cytosolic_fraction	chr8	62164804	62164857	62164815	-	High_confidence	94	96	267	9.262306	5.771517	chr8	62164702	62165238	LINE|L1|L1PB1	+	chr8	62133684	62164836	STRG.15512.1	-	62133684,62164568	62135746,62164836	0.794007
NCI_H460_cytosolic_fraction	chr13	33818332	33818375	33818374	+	High_confidence	4	4	23	0.797877	4.186704	chr13	33818361	33818761	LINE|L2|L2a	-	chr13	33818068	33837507	RFC3|NM_002915.3	+	33818068,33821131,33823916,33825788,33829835,33830718,33831255,33835147,33836103	33818265,33821269,33823984,33825886,33830017,33830855,33831354,33835217,33837507	0.782609
NCI_H460_cytosolic_fraction	chr8	143281653	143281687	143281686	-	High_confidence	84	95	441	15.298415	5.293695	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.714286
NCI_H460_cytosolic_fraction	chr16	19305005	19305006	19305005	+	High_confidence	4	5	7	0.242832	2.584963	chr16	19304715	19305078	LTR|ERVL|LTR16B1	-	chr16	19304880	19310947	CLEC19A|ENST00000468219.1	+	19304880,19307544,19309003	19305184,19307677,19310947	0.857143
NCI_H460_cytosolic_fraction	chr2	231072214	231072255	231072214	+	RAMPAGE_only	3	4	14	0.485664	3.378783	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	1.000000
NCI_H460_cytosolic_fraction	chr5	150639992	150640042	150640038	+	High_confidence	10	11	57	1.977346	5.222180	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150639992	150654728	STRG.11026.6	+	150639992,150647943	150640134,150654728	0.964912
NCI_H460_cytosolic_fraction	chrX	111127512	111127540	111127512	+	RAMPAGE_only	2	2	8	0.277522	3.000000	chrX	111127556	111127927	LINE|RTE-X|L4_A_Mam	+	chrX	111123103	111131514	STRG.33966.8	+	111123103,111124250	111123278,111131514	1.000000
NCI_H460_cytosolic_fraction	chr4	119279661	119279740	119279739	+	RAMPAGE_only	18	20	122	4.232215	5.189495	chr4	119274113	119280127	LINE|L1|L1PA2	-	chr4	119267247	119294638	STRG.9059.6	+	119267247,119268267,119269690,119271295,119273631,119292337	119267482,119268420,119269837,119272034,119273708,119294638	0.942623
NCI_H460_cytosolic_fraction	chr6	125950961	125950998	125950964	+	High_confidence	12	19	36	1.248850	4.558814	chr6	125950769	125951123	LTR|ERVL-MaLR|THE1A	+	chr6	125950851	125980244	STRG.12719.1	+	125950851,125954279,125956563,125966886,125972258,125974846,125977643	125951047,125954393,125957202,125967004,125972328,125974973,125980244	0.500000
NCI_H460_cytosolic_fraction	chrX	73999766	73999767	73999766	+	RAMPAGE_only	6	7	8	0.277522	2.750000	chrX	73999206	73999999	LINE|L1|L1M3de	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.625000
NCI_H460_cytosolic_fraction	chr2	227871018	227871054	227871053	+	High_confidence	13	14	27	0.936638	3.327875	chr2	227871080	227871251	SINE|MIR|MIR	+	chr2	227871053	227924344	DAW1|ENST00000373666.6	+	227871053,227885350,227889855,227891254,227893794,227898181,227903001,227904928,227906235,227907137,227912253,227918779,227921398,227923933	227871729,227885423,227890000,227891313,227893917,227898281,227903109,227905035,227906338,227907252,227912469,227918856,227921561,227924344	1.000000
NCI_H460_cytosolic_fraction	chr8	128420763	128420804	128420792	-	RAMPAGE_only	4	4	29	1.006018	4.513153	chr8	128420547	128420856	SINE|Alu|AluY	+	chr8	128405268	128561126	STRG.16053.1	-	128405268,128406775,128414213,128414540,128415365,128418680,128421742,128422912,128423500,128428235,128561069	128406633,128406846,128414408,128414690,128418316,128420823,128421814,128423026,128423593,128428384,128561126	1.000000
NCI_H460_cytosolic_fraction	chr5	130337949	130337954	130337952	+	High_confidence	103	121	181	6.278941	6.282337	chr5	130337852	130338318	LTR|ERVL|MLT2D	-	chr5	130337663	130382013	STRG.10662.1	+	130337663,130362690,130368142,130378326	130338082,130362834,130368323,130382013	0.939227
NCI_H460_cytosolic_fraction	chrX	147937583	147937599	147937583	+	RAMPAGE_only	2	2	10	0.346903	3.121928	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147943244	147948534	FMR1|ENST00000463120.2	+	147943244,147944868,147945533,147948412	147943326,147945051,147945616,147948534	0.800000
NCI_H460_cytosolic_fraction	chr4	118835946	118835954	118835953	-	High_confidence	5	5	9	0.312213	2.750000	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.888889
NCI_H460_cytosolic_fraction	chrX	77669103	77669134	77669133	-	RAMPAGE_only	10	10	18	0.624425	3.683542	chrX	77669066	77669249	SINE|MIR|MIR3	-	chrX	77504877	77786216	ATRX|ENST00000373344.10	-	77504877,77520787,77521402,77522262,77523251,77557450,77558668,77574249,77589833,77593695,77599410,77599731,77600433,77616612,77618805,77620394,77633206,77633565,77634593,77635914,77652113,77654097,77656559,77663381,77664644,77676225,77681519,77684938,77688817,77693823,77696576,77697582,77698573,77717130,77785981	77508629,77520916,77521498,77522388,77523401,77557645,77558846,77574358,77589940,77593849,77599580,77599820,77600564,77616730,77618981,77620532,77633384,77633712,77634703,77636056,77652353,77654200,77656653,77663558,77664778,77676298,77684593,77685006,77688927,77693937,77696704,77697635,77698629,77717243,77786216	1.000000
NCI_H460_cytosolic_fraction	chr7	1571015	1571024	1571015	-	High_confidence	42	51	99	3.434338	5.827368	chr7	1570731	1571033	SINE|Alu|AluSx	-	chr7	1567612	1571005	PSMG3|ENST00000252329.3	-	1567612,1569123,1570473	1567850,1569360,1571005	0.878788
NCI_H460_cytosolic_fraction	chr12	109881241	109881242	109881241	-	High_confidence	8	8	9	0.312213	2.750000	chr12	109881109	109881661	LTR|ERV1|MER51B	+	chr12	109850942	109880488	GLTP|NM_016433.3	-	109850942,109855618,109857525,109858682,109880271	109852737,109855769,109857659,109858741,109880488	0.777778
NCI_H460_cytosolic_fraction	chr6	43025276	43025308	43025307	+	High_confidence	3	4	17	0.589735	3.969816	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.647059
NCI_H460_cytosolic_fraction	chr13	64075746	64075778	64075762	-	High_confidence	7	7	42	1.456992	4.272804	chr13	64074921	64075752	LTR|ERV1|MER52A	-	chr13	64002297	64075782	STRG.22949.2	-	64002297,64003347,64075241	64002409,64003468,64075782	0.833333
NCI_H460_cytosolic_fraction	chr1	91297225	91297226	91297225	-	RAMPAGE_only	8	8	8	0.277522	2.750000	chr1	91296806	91302949	LINE|L1|L1PA4	+	chr1	91286291	91286981	STRG.1397.1	-	91286291	91286981	0.875000
NCI_H460_cytosolic_fraction	chr6	291317	291335	291317	-	RAMPAGE_only	2	2	8	0.277522	2.521641	chr6	290962	291398	LINE|L2|L2b	-	chr6	285349	287826	STRG.11332.1	-	285349,285914	285384,287826	0.625000
NCI_H460_cytosolic_fraction	chr5	150640314	150640400	150640347	+	High_confidence	42	43	181	6.278941	5.817502	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.994475
NCI_H460_cytosolic_fraction	chr12	12927708	12927744	12927733	+	High_confidence	77	78	211	7.319650	7.120416	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.616114
NCI_H460_cytosolic_fraction	chr8	102808314	102808350	102808314	+	High_confidence	4	4	18	0.624425	3.794653	chr8	102808194	102808324	DNA|hAT-Charlie|MER5B	-	chr8	102808325	102810737	STRG.15870.2	+	102808325	102810737	1.000000
NCI_H460_cytosolic_fraction	chr15	55371804	55371841	55371804	-	RAMPAGE_only	3	3	18	0.624425	3.734522	chr15	55371592	55371758	SINE|MIR|MIRb	-	chr15	55358838	55372952	CCPG1|ENST00000568372.5	-	55358838,55365187,55371792	55360944,55365309,55372952	0.944444
NCI_H460_cytosolic_fraction	chr2	110642789	110642790	110642789	-	High_confidence	21	21	21	0.728496	3.784942	chr2	110642693	110642986	SINE|Alu|AluJr	-	chr2	110641325	110642790	BUB1|ENST00000478175.1	-	110641325,110641641,110642118,110642448	110641464,110641803,110642234,110642790	0.857143
NCI_H460_cytosolic_fraction	chr7	32043848	32043875	32043848	-	High_confidence	11	14	77	2.671152	5.588025	chr7	32043807	32043898	SINE|MIR|MIRc	+	chr7	31783520	32043869	STRG.13503.6	-	31783520,31809030,31815923,31823072,31824866,31828291,31837179,31847967,31850640,31864941,31873291,31877969,31878995,31880746,32043787	31790259,31809108,31816154,31823248,31824987,31828373,31837300,31848096,31850741,31865082,31873408,31878036,31879178,31880860,32043869	0.909091
NCI_H460_cytosolic_fraction	chr1	180872377	180872427	180872377	+	RAMPAGE_only	3	3	27	0.936638	4.133661	chr1	180866811	180872843	LINE|L1|L1HS	-	chr1	180632031	180886126	XPR1|ENST00000367589.3	+	180632031,180682359,180787752,180803387,180806061,180806473,180811406,180824752,180825164,180834873,180863707,180873802,180880075,180884005	180632270,180682411,180787854,180803611,180806211,180806557,180811488,180824943,180825344,180835045,180863874,180873942,180880297,180886126	0.888889
NCI_H460_cytosolic_fraction	chr1	84479010	84479011	84479010	+	High_confidence	7	7	7	0.242832	2.521641	chr1	84478881	84479033	LINE|L2|L2a	+	chr1	84479236	84498350	RPF1|NM_025065.6	+	84479236,84480955,84482914,84489632,84490318,84495372,84495881,84496243,84497428	84479509,84481012,84482995,84489728,84490472,84495455,84496063,84496370,84498350	0.857143
NCI_H460_cytosolic_fraction	chr20	18794077	18794086	18794077	+	High_confidence	16	17	37	1.283541	4.628108	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
NCI_H460_cytosolic_fraction	chr12	19945650	19945707	19945703	-	RAMPAGE_only	14	20	111	3.850622	5.041233	chr12	19945684	19945964	LINE|L2|L2	+	chr12	19940265	19946784	STRG.20985.2	-	19940265,19945349,19946613	19941610,19945478,19946784	0.945946
NCI_H460_cytosolic_fraction	chr19	46180671	46180694	46180693	-	High_confidence	5	6	15	0.520354	3.378783	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46173426	46180949	STRG.30621.3	-	46173426,46173933,46179485,46180604,46180800	46173520,46174052,46179537,46180689,46180949	0.800000
NCI_H460_cytosolic_fraction	chr16	28490637	28490663	28490662	-	RAMPAGE_only	3	3	11	0.381593	3.459432	chr16	28490479	28490780	SINE|Alu|AluY	+	chr16	28477789	28491739	CLN3|ENST00000566824.6	-	28477789,28479643,28482104,28482326,28482476,28484005,28486346,28486577,28487455,28487661,28488590,28489289,28491481,28491713	28477877,28479765,28482198,28482382,28482672,28484118,28486490,28486650,28487541,28487741,28488662,28489386,28491560,28491739	0.818182
NCI_H460_cytosolic_fraction	chr12	71118449	71118538	71118459	-	High_confidence	58	73	369	12.800715	5.771788	chr12	71118072	71124103	LINE|L1|L1PA2	+	chr12	71110214	71118247	STRG.21753.2	-	71110214,71115849,71118069	71113245,71115958,71118247	0.813008
NCI_H460_cytosolic_fraction	chr9	129489073	129489131	129489125	+	High_confidence	22	28	91	3.156816	5.872911	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.780220
NCI_H460_cytosolic_fraction	chr19	3062949	3062986	3062949	-	High_confidence	2	2	11	0.381593	3.121928	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.909091
NCI_H460_cytosolic_fraction	chr1	154975505	154975552	154975551	+	High_confidence	3	3	12	0.416283	3.418296	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975538	154978916	CKS1B|ENST00000473344.1	+	154975538,154977986,154978724	154975608,154978114,154978916	0.666667
NCI_H460_cytosolic_fraction	chr10	130171593	130171635	130171634	+	RAMPAGE_only	5	5	10	0.346903	2.921928	chr10	130171683	130171980	SINE|Alu|AluJb	+	chr10	130179373	130180382	GLRX3|ENST00000496195.1	+	130179373,130180112	130179420,130180382	0.900000
NCI_H460_cytosolic_fraction	chr4	81154213	81154222	81154221	-	High_confidence	24	24	45	1.561063	4.815459	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.955556
NCI_H460_cytosolic_fraction	chr3	27194177	27194198	27194193	-	High_confidence	16	16	46	1.595753	4.296866	chr3	27194122	27194414	SINE|Alu|AluYc3	-	chr3	27174440	27194231	NEK10|ENST00000460447.1	-	27174440,27174649,27192028,27194060	27174525,27174833,27192242,27194231	0.891304
NCI_H460_cytosolic_fraction	chr1	228103435	228103494	228103488	+	High_confidence	11	11	51	1.769204	4.868120	chr1	228103518	228103807	SINE|Alu|AluSz	+	chr1	228103446	228104715	STRG.3099.1	+	228103446	228104715	1.000000
NCI_H460_cytosolic_fraction	chr9	77822994	77823001	77822997	-	RAMPAGE_only	48	52	100	3.469028	5.754918	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77716273	78031449	GNAQ|NM_002072.4	-	77716273,77728513,77794462,77797519,77815615,77922160,78031099	77721513,77728667,77794592,77797648,77815770,77922345,78031449	0.930000
NCI_H460_cytosolic_fraction	chr14	100406597	100406611	100406597	+	RAMPAGE_only	5	5	9	0.312213	3.169925	chr14	100406585	100406624	SINE|MIR|MIR	-	chr14	100418562	100541038	STRG.24237.5	+	100418562,100468020,100483993,100525869,100529067,100529819,100541025	100418723,100468168,100484124,100526040,100529208,100529971,100541038	0.555556
NCI_H460_cytosolic_fraction	chr12	42442536	42442537	42442536	+	High_confidence	102	103	110	3.815931	6.075013	chr12	42442198	42442662	LTR|ERVK|LTR22E	+	chr12	42442648	42448623	PPHLN1|ENST00000624028.1	+	42442648	42448623	0.954545
NCI_H460_cytosolic_fraction	chr1	159920334	159920462	159920334	-	RAMPAGE_only	5	5	63	2.185488	5.250702	chr1	159920065	159920288	LINE|CR1|L3b	-	chr1	159918106	159923717	TAGLN2|NM_001277224.1	-	159918106,159919273,159919660,159920329,159923435	159918941,159919376,159919835,159920537,159923717	1.000000
NCI_H460_cytosolic_fraction	chr14	26634853	26634854	26634853	+	RAMPAGE_only	9	10	14	0.485664	3.521641	chr14	26629268	26635299	LINE|L1|L1PA2	-	chr14	26731060	26806380	STRG.23375.2	+	26731060,26779794,26780481,26781921,26806235	26731156,26779879,26780618,26782208,26806380	0.500000
NCI_H460_cytosolic_fraction	chrX	41029413	41029428	41029418	-	High_confidence	10	16	29	1.006018	3.308277	chrX	41029378	41029504	LTR|ERVL-MaLR|MLT1H	+	chrX	41008519	41029449	STRG.33324.1	-	41008519,41029164	41009245,41029449	0.517241
NCI_H460_cytosolic_fraction	chr13	44311275	44311292	44311275	+	High_confidence	3	3	10	0.346903	2.921928	chr13	44311314	44311568	LINE|RTE-BovB|MamRTE1	+	chr13	44311518	44311984	STRG.22773.1	+	44311518	44311984	0.500000
NCI_H460_cytosolic_fraction	chr5	93563993	93564012	93564011	-	High_confidence	4	4	11	0.381593	3.321928	chr5	93563820	93564150	SINE|Alu|AluY	+	chr5	93411032	93563988	STRG.10406.7	-	93411032,93553760,93554873,93563363,93563791	93411509,93553863,93554995,93563463,93563988	0.909091
NCI_H460_cytosolic_fraction	chr4	39499841	39500181	39499998	-	RAMPAGE_only	24	24	653	22.652756	4.655442	chr4	39499748	39499999	SINE|Alu|AluYk2	+	chr4	39498787	39526557	UGDH|ENST00000506179.5	-	39498787,39503874,39504416,39505236,39505617,39508565,39509759,39510352,39510660,39514082,39521350,39526383	39500253,39503985,39504508,39505370,39505748,39508660,39509907,39510550,39510861,39514184,39521519,39526557	1.000000
NCI_H460_cytosolic_fraction	chr14	100569561	100569605	100569593	-	High_confidence	19	19	44	1.526373	4.975418	chr14	100569527	100569624	LINE|L2|L2b	+	chr14	100538887	100569558	BEGAIN|ENST00000556188.5	-	100538887,100540495,100543857,100544999,100546500,100567910,100569426	100539315,100540579,100543965,100545066,100546662,100567939,100569558	0.704545
NCI_H460_cytosolic_fraction	chr1	243269717	243269735	243269717	+	High_confidence	8	10	28	0.971328	4.458591	chr1	243269606	243269808	LINE|L1|L1MDb	-	chr1	243269135	243271032	SDCCAG8|ENST00000491888.1	+	243269135,243270091,243270977	243269200,243270257,243271032	0.500000
NCI_H460_cytosolic_fraction	chr1	150729932	150729971	150729948	-	High_confidence	4	5	29	1.006018	4.310443	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150697955	150729710	STRG.1984.1	-	150697955,150700111,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150714614,150717137,150719472,150729141,150729573	150698734,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150714678,150717282,150719538,150729225,150729710	0.758621
NCI_H460_cytosolic_fraction	chr12	131371486	131371505	131371504	-	High_confidence	3	3	9	0.312213	2.725481	chr12	131371471	131371655	LTR|ERVL|LTR33A	-	chr12	131350255	131371773	STRG.22448.2	-	131350255,131353686,131371390	131352999,131353783,131371773	1.000000
NCI_H460_cytosolic_fraction	chr2	40238626	40238631	40238630	-	High_confidence	20	20	32	1.110089	4.687500	chr2	40232600	40238627	LINE|L1|L1PA2	-	chr2	40097438	40238627	STRG.3841.2	-	40097438,40139400,40160764,40164853,40174824,40177751,40238533	40115629,40139676,40160864,40164984,40174842,40177855,40238627	0.875000
NCI_H460_cytosolic_fraction	chr12	19945464	19945492	19945491	-	RAMPAGE_only	6	11	34	1.179470	4.017900	chr12	19945366	19945519	SINE|Alu|AluJb	+	chr12	19940265	19946784	STRG.20985.2	-	19940265,19945349,19946613	19941610,19945478,19946784	0.941176
NCI_H460_cytosolic_fraction	chr11	17282887	17282908	17282907	+	RAMPAGE_only	3	3	6	0.208142	2.584963	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	1.000000
NCI_H460_cytosolic_fraction	chr8	99892003	99892057	99892056	-	RAMPAGE_only	33	33	103	3.573099	4.846695	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.990291
NCI_H460_cytosolic_fraction	chr2	75239275	75239310	75239277	+	High_confidence	115	202	489	16.963549	6.402570	chr2	75238954	75239942	DNA|TcMar-Tigger|Tigger6a	+	chr2	75239184	75279681	STRG.4293.1	+	75239184,75276509,75278077	75239696,75276599,75279681	0.950920
NCI_H460_cytosolic_fraction	chr1	185257385	185257420	185257385	+	RAMPAGE_only	5	5	14	0.485664	3.546594	chr1	185251798	185257805	LINE|L1|L1PA2	-	chr1	185174551	185291688	STRG.2590.1	+	185174551,185180390,185181945,185184242,185184742,185190548,185202653,185204699,185206624,185214506,185221848,185231576,185271322,185276603,185290673	185175113,185180450,185182057,185184344,185184931,185190642,185202799,185204863,185206763,185214655,185222036,185231708,185271389,185276668,185291688	0.500000
NCI_H460_cytosolic_fraction	chrX	19349990	19350078	19349990	+	RAMPAGE_only	7	8	64	2.220178	5.558365	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19355581	19359844	PDHA1|ENST00000379804.1	+	19355581,19357651,19358915,19359488	19355757,19357719,19359024,19359844	0.625000
NCI_H460_cytosolic_fraction	chr11	5505651	5505652	5505651	-	High_confidence	9	9	9	0.312213	2.947703	chr11	5505485	5505844	LTR|ERVL-MaLR|THE1B	-	chr11	5268344	5505652	HBE1|ENST00000292896.3	-	5268344,5269453,5269798,5505568	5268597,5269676,5270156,5505652	0.777778
NCI_H460_cytosolic_fraction	chr2	38086213	38086214	38086213	-	High_confidence	260	261	300	10.407085	5.905449	chr2	38086114	38086512	LTR|ERV1|LTR7	-	chr2	38080837	38086185	STRG.3807.4	-	38080837,38085966	38081211,38086185	0.970000
NCI_H460_cytosolic_fraction	chr1	238486024	238486043	238486028	-	High_confidence	24	34	192	6.660535	6.113081	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480440	238486023	LINC01139|ENST00000649681.1	-	238480440	238486023	0.989583
NCI_H460_cytosolic_fraction	chr7	102973308	102973407	102973321	+	High_confidence	21	26	90	3.122126	4.731922	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973305	102978657	STRG.14374.2	+	102973305,102978314	102973771,102978657	0.800000
NCI_H460_cytosolic_fraction	chr5	60533916	60533920	60533919	+	RAMPAGE_only	23	33	45	1.561063	3.456860	chr5	60533762	60534097	LTR|ERVL-MaLR|MSTD	+	chr5	60546218	60546349	RF02161|ENST00000619680.1	+	60546218	60546349	0.844444
NCI_H460_cytosolic_fraction	chr2	232891001	232891011	232891010	-	High_confidence	3	3	8	0.277522	2.521641	chr2	232890857	232891264	LINE|L2|L2c	+	chr2	232882228	232890980	NGEF|ENST00000424488.5	-	232882228,232883310,232883980,232885279,232888032,232890933	232882265,232883466,232884144,232885369,232888107,232890980	0.500000
NCI_H460_cytosolic_fraction	chr8	15417190	15417197	15417190	+	High_confidence	229	232	340	11.794697	6.620322	chr8	15417004	15417387	LTR|ERVL-MaLR|MSTA	+	chr8	15417214	15764418	STRG.15113.2	+	15417214,15483385,15623079,15650696,15659506,15662155,15673746,15730665,15743537,15748374,15764202	15417305,15483483,15623249,15650814,15659647,15662296,15673836,15730729,15743612,15748465,15764418	0.917647
NCI_H460_cytosolic_fraction	chr1	45522952	45523018	45522977	-	High_confidence	7	9	33	1.144779	4.327820	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45514506	45523047	PRDX1|ENST00000424390.1	-	45514506,45514872,45515653,45518937,45522777	45514637,45514995,45515807,45519054,45523047	0.818182
NCI_H460_cytosolic_fraction	chr16	21611789	21611827	21611826	+	High_confidence	2	2	8	0.277522	2.807355	chr16	21611579	21611827	SINE|MIR|MIRb	-	chr16	21612099	21625115	METTL9|ENST00000562961.1	+	21612099,21612644,21617864,21624930	21612298,21612835,21618074,21625115	0.625000
NCI_H460_cytosolic_fraction	chr1	241848744	241848967	241848744	+	High_confidence	6	6	111	3.850622	5.640571	chr1	241848591	241848771	DNA|hAT-Charlie|MER102b	-	chr1	241848730	241889937	EXO1|ENST00000348581.9	+	241848730,241850408,241852291,241853357,241857344,241858505,241860516,241861405,241866829,241872031,241878748,241881915,241885313,241889464	241849027,241850586,241852411,241853481,241857482,241858718,241860704,241861502,241867055,241872278,241879343,241882017,241885507,241889937	0.963964
NCI_H460_cytosolic_fraction	chr6	34219370	34219371	34219370	+	High_confidence	23	23	28	0.971328	3.869331	chr6	34219234	34219371	SINE|Alu|AluSx	+	chr6	34219438	34220066	CYCSP55|ENST00000399027.3	+	34219438,34220022	34219705,34220066	0.714286
NCI_H460_cytosolic_fraction	chr8	116648807	116648832	116648830	-	RAMPAGE_only	2	4	10	0.346903	2.947703	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.900000
NCI_H460_cytosolic_fraction	chr14	27673215	27673253	27673239	-	High_confidence	21	21	80	2.775223	5.504271	chr14	27673059	27679095	LINE|L1|L1PA3	+	chr14	27321921	27673221	AL390334.1|ENST00000556890.1	-	27321921,27656337,27673028	27322141,27656502,27673221	0.687500
NCI_H460_cytosolic_fraction	chrX	68217302	68217319	68217302	-	RAMPAGE_only	7	8	23	0.797877	4.186704	chrX	68216915	68222939	LINE|L1|L1PA2	+	chrX	68042346	68210268	STRG.33606.1	-	68042346,68048415,68052539,68053644,68063853,68073151,68096869,68111853,68113180,68119247,68192918,68193889,68194464,68197185,68201618,68206572,68210152	68047163,68048457,68052590,68053810,68064177,68073299,68097029,68111959,68113239,68119332,68192993,68193952,68194498,68197264,68201710,68206673,68210268	0.608696
NCI_H460_cytosolic_fraction	chr2	201402882	201402886	201402882	-	RAMPAGE_only	8	8	15	0.520354	3.240224	chr2	201402818	201402918	DNA|hAT-Charlie|MER5B	-	chr2	201395127	201451500	TRAK2|ENST00000430254.1	-	201395127,201397501,201398144,201399376,201401017,201407402,201420416,201451349	201395444,201397580,201398354,201399493,201401094,201407597,201420706,201451500	0.600000
NCI_H460_cytosolic_fraction	chr1	196786510	196786555	196786536	+	RAMPAGE_only	12	12	72	2.497700	4.888084	chr1	196780803	196786955	LINE|L1|L1PA3	-	chr1	196789759	196793633	CFHR3|ENST00000461558.2	+	196789759,196793316	196790227,196793633	0.694444
NCI_H460_cytosolic_fraction	chr4	94343205	94343245	94343244	-	High_confidence	4	4	13	0.450974	3.700440	chr4	94343195	94343396	LINE|L2|L2a	+	chr4	94298534	94342876	HPGDS|ENST00000295256.9	-	94298534,94302145,94308633,94317872,94334496,94342794	94299644,94302244,94308743,94317965,94334638,94342876	0.923077
NCI_H460_cytosolic_fraction	chr5	94732718	94732719	94732718	+	High_confidence	31	31	35	1.214160	4.594672	chr5	94732537	94732916	LTR|ERVL-MaLR|MLT1A0	+	chr5	94732923	94741467	STRG.10432.1	+	94732923,94739163	94732942,94741467	0.600000
NCI_H460_cytosolic_fraction	chr9	73153910	73153932	73153931	+	RAMPAGE_only	5	5	12	0.416283	2.855389	chr9	73153736	73154131	LINE|L2|L2c	-	chr9	73151901	73160338	ANXA1|ENST00000415424.5	+	73151901,73154197,73158521,73158694,73159328,73160262	73151924,73154340,73158601,73158803,73159423,73160338	1.000000
NCI_H460_cytosolic_fraction	chr1	246689738	246689815	246689793	+	High_confidence	4	5	36	1.248850	4.572469	chr1	246689571	246689829	LTR|ERVL|LTR41	+	chr1	246690046	246691821	AL591848.2|ENST00000442712.1	+	246690046,246691467	246690214,246691821	0.833333
NCI_H460_cytosolic_fraction	chr2	142871512	142871575	142871565	-	High_confidence	29	31	131	4.544427	5.621721	chr2	142871434	142871734	SINE|Alu|AluJb	+	chr2	142853762	142871630	STRG.4968.1	-	142853762,142865433,142869422,142870511,142870783,142871449	142855067,142865559,142869594,142870633,142870974,142871630	0.793893
NCI_H460_cytosolic_fraction	chr22	30588030	30588044	30588043	-	RAMPAGE_only	3	3	7	0.242832	2.584963	chr22	30587924	30588011	SINE|MIR|MIRb	-	chr22	30576834	30591858	PES1|ENST00000335214.8	-	30576834,30578836,30579136,30579750,30580052,30580570,30581011,30581333,30581527,30584364,30584545,30587285,30588020,30589190,30591809	30577129,30578998,30579303,30579935,30580178,30580686,30581101,30581408,30581644,30584454,30584717,30587395,30588174,30589270,30591858	0.857143
NCI_H460_cytosolic_fraction	chr5	84294198	84294219	84294218	-	RAMPAGE_only	14	16	24	0.832567	4.055958	chr5	84294101	84294410	SINE|Alu|AluY	+	chr5	83940599	84384386	EDIL3|ENST00000380138.3	-	83940599,83963204,84060299,84064699,84066450,84106648,84137240,84180392,84254083,84384307	83943568,83963360,84060484,84064844,84066606,84106830,84137354,84180521,84254212,84384386	0.791667
NCI_H460_cytosolic_fraction	chr15	88467155	88467178	88467155	-	High_confidence	1	1	7	0.242832	2.584963	chr15	88466995	88467123	SINE|MIR|MIRb	-	chr15	88459477	88467402	MRPL46|NM_022163.3	-	88459477,88464702,88465586,88467149	88459863,88464876,88465773,88467402	0.714286
NCI_H460_cytosolic_fraction	chr3	16697695	16697696	16697695	-	High_confidence	9	9	13	0.450974	3.392747	chr3	16697224	16697676	LTR|ERV1|LTR49-int	-	chr3	16586791	16697995	STRG.6352.1	-	16586791,16592049,16593654,16594532,16595313,16596749,16596987,16597489,16598086,16598451,16637884,16647573,16697378	16588713,16592148,16593768,16594583,16595385,16596889,16597051,16597541,16598178,16598598,16638085,16648612,16697995	1.000000
NCI_H460_cytosolic_fraction	chr14	26678977	26678987	26678977	+	High_confidence	3	3	7	0.242832	2.807355	chr14	26673315	26679374	LINE|L1|L1PA2	-	chr14	26679170	26806380	STRG.23375.1	+	26679170,26724747,26779794,26780481,26797913,26806235	26679398,26724794,26779879,26780618,26798030,26806380	0.857143
NCI_H460_cytosolic_fraction	chr4	158167223	158167229	158167223	-	RAMPAGE_only	13	18	35	1.214160	4.771143	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158124579	158172566	FAM198B|NM_016613.6	-	158124579,158130785,158155610,158170465,158172338	158127614,158131012,158155825,158171599,158172566	0.971429
NCI_H460_cytosolic_fraction	chrX	41029462	41029463	41029462	-	High_confidence	28	28	36	1.248850	4.572469	chrX	41029378	41029504	LTR|ERVL-MaLR|MLT1H	+	chrX	41008519	41029449	STRG.33324.1	-	41008519,41029164	41009245,41029449	0.583333
NCI_H460_cytosolic_fraction	chr15	51603695	51603702	51603701	-	RAMPAGE_only	18	20	32	1.110089	4.640224	chr15	51603584	51603891	SINE|Alu|AluY	+	chr15	51447787	51622635	DMXL2|ENST00000543779.6	-	51447787,51450128,51451644,51453549,51455150,51456065,51456308,51457327,51458505,51458708,51463378,51464674,51465565,51466183,51471222,51474343,51476588,51478270,51479947,51480541,51486072,51487953,51488547,51491577,51495023,51498551,51502805,51507133,51514441,51517077,51535662,51536165,51537487,51538212,51542332,51545582,51547229,51563380,51564124,51565087,51568486,51576055,51622458	51449193,51450346,51451697,51453641,51455228,51456193,51456369,51457466,51458627,51458795,51463496,51464876,51465651,51466311,51471401,51474592,51476719,51478347,51480139,51481623,51486337,51488119,51488645,51491747,51495134,51500231,51503033,51507253,51514559,51517167,51535784,51536862,51537759,51538452,51542507,51545766,51547408,51563447,51564260,51565166,51568558,51576181,51622635	0.812500
NCI_H460_cytosolic_fraction	chr5	134875064	134875086	134875064	+	High_confidence	7	7	24	0.832567	4.175736	chr5	134874872	134875108	SINE|MIR|MIRb	-	chr5	134875095	134888180	TXNDC15|ENST00000508810.1	+	134875095,134887694	134875188,134888180	0.791667
NCI_H460_cytosolic_fraction	chr2	55654899	55654954	55654899	-	RAMPAGE_only	5	7	17	0.589735	3.852169	chr2	55654742	55654866	SINE|Alu|AluJr	-	chr2	55636369	55647382	PNPT1|ENST00000481066.1	-	55636369,55637551,55640626,55643157,55643318,55644636,55646258,55646414,55647346	55636392,55637599,55640705,55643213,55643425,55645432,55646322,55646486,55647382	1.000000
NCI_H460_cytosolic_fraction	chr1	97904659	97904676	97904675	-	RAMPAGE_only	6	6	10	0.346903	2.921928	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.700000
NCI_H460_cytosolic_fraction	chr12	69778975	69778984	69778983	+	High_confidence	8	8	18	0.624425	3.690117	chr12	69773410	69779441	LINE|L1|L1HS	-	chr12	69778966	69817117	RAB3IP|ENST00000553099.5	+	69778966,69784719,69794436,69795140,69800208,69801608,69812777,69812963,69815363	69779096,69784815,69794514,69795344,69800337,69801721,69812877,69813033,69817117	0.833333
NCI_H460_cytosolic_fraction	chr14	26679289	26679324	26679289	+	High_confidence	5	7	28	0.971328	4.307355	chr14	26673315	26679374	LINE|L1|L1PA2	-	chr14	26679170	26806380	STRG.23375.1	+	26679170,26724747,26779794,26780481,26797913,26806235	26679398,26724794,26779879,26780618,26798030,26806380	0.642857
NCI_H460_cytosolic_fraction	chr4	76234500	76234534	76234500	-	High_confidence	3	3	10	0.346903	3.169925	chr4	76234334	76234657	LTR|ERV1|MER61A	-	chr4	76158759	76234536	SCARB2|ENST00000638295.1	-	76158759,76163224,76166249,76168402,76169866,76174143,76175790,76176436,76179516,76180953,76195706,76234302	76161751,76163383,76166301,76168476,76169985,76174313,76175910,76176528,76179705,76181101,76195864,76234536	0.600000
NCI_H460_cytosolic_fraction	chr5	140669753	140669781	140669753	+	High_confidence	2	2	10	0.346903	2.725481	chr5	140669738	140670028	SINE|Alu|AluJb	-	chr5	140668920	140672344	STRG.10898.24	+	140668920,140669332	140669248,140672344	0.900000
NCI_H460_cytosolic_fraction	chr7	99471746	99471753	99471746	-	RAMPAGE_only	5	5	19	0.659115	2.947703	chr7	99471609	99471877	SINE|Alu|AluSx1	+	chr7	99458194	99466331	ATP5MF|ENST00000292475.7	-	99458194,99459146,99460085,99466110	99458355,99459263,99460193,99466331	0.736842
NCI_H460_cytosolic_fraction	chr9	30925248	30925285	30925278	-	High_confidence	72	98	429	14.882132	5.953332	chr9	30925086	30925479	LTR|ERVL-MaLR|MSTA	-	chr9	30914322	30925343	STRG.16423.1	-	30914322,30925167	30915064,30925343	0.939394
NCI_H460_cytosolic_fraction	chr6	23228767	23228823	23228790	+	High_confidence	15	19	83	2.879294	5.358984	chr6	23227561	23229347	LINE|L1|L1PBa1	-	chr6	23228789	23408279	STRG.11617.2	+	23228789,23303872,23394803,23397253,23398929,23402940,23403863	23229052,23303926,23394937,23397478,23399122,23403123,23408279	0.879518
NCI_H460_cytosolic_fraction	chr14	101730404	101730406	101730404	+	High_confidence	17	32	43	1.491682	4.926037	chr14	101730210	101730580	LTR|ERVL-MaLR|THE1B	+	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.953488
NCI_H460_cytosolic_fraction	chr3	50226714	50226726	50226725	+	High_confidence	4	5	13	0.450974	3.418296	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	0.846154
NCI_H460_cytosolic_fraction	chr3	183034328	183034354	183034353	-	RAMPAGE_only	3	3	8	0.277522	2.807355	chr3	183034168	183034477	SINE|Alu|AluY	+	chr3	183022468	183037355	MCCC1|ENST00000489909.1	-	183022468,183025754,183029092,183033990,183037217	183022554,183025804,183029189,183034077,183037355	0.500000
NCI_H460_cytosolic_fraction	chr4	188109602	188109603	188109602	-	High_confidence	50	54	59	2.046727	5.431173	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188091372	188109603	STRG.9544.2	-	188091372,188097060,188097323,188099034,188101055,188104836,188105179,188109242	188091941,188097161,188097346,188099175,188101250,188104932,188105587,188109603	0.983051
NCI_H460_cytosolic_fraction	chr20	50172410	50172431	50172410	+	High_confidence	3	4	12	0.416283	2.845351	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.916667
NCI_H460_cytosolic_fraction	chr1	148279227	148279263	148279240	+	RAMPAGE_only	3	3	15	0.520354	3.664498	chr1	148279033	148279814	LINE|L1|L1MEc	+	chr1	148287775	148288828	STRG.1887.1	+	148287775	148288828	0.533333
NCI_H460_cytosolic_fraction	chrX	111127216	111127284	111127283	+	RAMPAGE_only	4	4	13	0.450974	3.251629	chrX	111126947	111127294	LINE|L1|L1ME4a	-	chrX	111123103	111131514	STRG.33966.8	+	111123103,111124250	111123278,111131514	0.923077
NCI_H460_cytosolic_fraction	chr15	80059915	80059933	80059918	+	High_confidence	91	103	316	10.962130	5.349600	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.974684
NCI_H460_cytosolic_fraction	chr1	45522855	45522859	45522858	-	High_confidence	1965	1968	3225	111.876167	7.586043	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.989457
NCI_H460_cytosolic_fraction	chr6	26474333	26474344	26474343	+	High_confidence	5	5	11	0.381593	3.277613	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26474354	26476619	STRG.11658.1	+	26474354,26476160	26474396,26476619	0.727273
NCI_H460_cytosolic_fraction	chr1	188814612	188814613	188814612	-	RAMPAGE_only	21	22	22	0.763186	4.392317	chr1	188814528	188814624	LINE|L1|L1PA10	+	chr1	188656682	188822601	STRG.2625.1	-	188656682,188673457,188705184,188706126,188708428,188709755,188710810,188814464,188822181	188656854,188673600,188705357,188706285,188708586,188709807,188710878,188814611,188822601	0.590909
NCI_H460_cytosolic_fraction	chr17	79769997	79770024	79770023	-	High_confidence	5	7	18	0.624425	3.836592	chr17	79769822	79770126	LTR|ERVL|MLT2C1	+	chr17	79753160	79770182	STRG.28658.2	-	79753160,79758841,79769898	79757713,79759027,79770182	0.833333
NCI_H460_cytosolic_fraction	chr2	218287279	218287306	218287279	-	High_confidence	17	17	38	1.318231	4.736216	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.736842
NCI_H460_cytosolic_fraction	chr6	116058745	116058746	116058745	-	High_confidence	15	17	18	0.624425	2.777777	chr6	116058628	116058931	SINE|Alu|AluY	+	chr6	115931155	116058760	STRG.12654.3	-	115931155,115943019,115944243,115956451,115967550,115968575,116003876,116058560	115942625,115943185,115944425,115956610,115967719,115968739,116003998,116058760	0.833333
NCI_H460_cytosolic_fraction	chr4	88456759	88456780	88456759	-	RAMPAGE_only	3	3	12	0.416283	2.663533	chr4	88456468	88456764	SINE|Alu|AluY	-	chr4	88415946	88419717	STRG.8841.1	-	88415946,88419301,88419573	88416079,88419408,88419717	0.916667
NCI_H460_cytosolic_fraction	chr4	110411228	110411264	110411240	+	RAMPAGE_only	3	3	12	0.416283	3.027169	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110365732	110506258	ENPEP|ENST00000510961.1	+	110365732,110488540,110491032,110500028,110506182	110365804,110488682,110491164,110500163,110506258	0.583333
NCI_H460_cytosolic_fraction	chr17	13671279	13671293	13671279	-	High_confidence	6	6	15	0.520354	3.506891	chr17	13670222	13671331	LINE|L1|L1M2	+	chr17	13661717	13671435	STRG.27295.1	-	13661717,13671392	13665512,13671435	1.000000
NCI_H460_cytosolic_fraction	chr14	28188502	28188523	28188502	-	RAMPAGE_only	9	9	20	0.693806	3.892407	chr14	28188442	28194470	LINE|L1|L1PA2	+	chr14	28074025	28074520	STRG.23383.1	-	28074025	28074520	0.600000
NCI_H460_cytosolic_fraction	chr2	190607238	190607301	190607300	-	RAMPAGE_only	2	2	14	0.485664	3.807355	chr2	190607108	190607299	LINE|L2|L2c	-	chr2	190506892	190534742	NEMP2|NR_136298.1	-	190506892,190510360,190514452,190516269,190517519,190518735,190518951,190525262,190534558	190509312,190510537,190514678,190516338,190517613,190518808,190519183,190525378,190534742	0.785714
NCI_H460_cytosolic_fraction	chr1	56645735	56645752	56645751	+	High_confidence	2	3	6	0.208142	2.584963	chr1	56645691	56645853	SINE|MIR|MIR3	+	chr1	56645387	56715334	PRKAA2|ENST00000610361.1	+	56645387,56671440,56674380,56691393,56692357,56693764,56695934,56703970,56706091,56707474	56645474,56671447,56674522,56691487,56692502,56693852,56696159,56704475,56706218,56715334	0.666667
NCI_H460_cytosolic_fraction	chr3	12840635	12840636	12840635	-	High_confidence	62	62	62	2.150798	4.531406	chr3	12840594	12840703	SINE|MIR|MIRc	+	chr3	12834944	12840450	RPL32|NM_001007074.1	-	12834944,12839348,12840141	12836223,12839530,12840450	1.000000
NCI_H460_cytosolic_fraction	chr15	85330238	85330287	85330286	-	RAMPAGE_only	4	4	16	0.555045	3.750000	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.812500
NCI_H460_cytosolic_fraction	chr7	74186845	74186877	74186871	+	RAMPAGE_only	12	12	40	1.387611	4.650662	chr7	74186788	74186924	SINE|Alu|AluSx3	-	chr7	74174375	74197099	EIF4H|NM_031992.1	+	74174375,74187610,74189672,74189821,74194740,74195168	74174442,74187798,74189737,74189918,74194878,74197099	0.875000
NCI_H460_cytosolic_fraction	chr15	66943029	66943042	66943041	-	RAMPAGE_only	3	4	10	0.346903	2.725481	chr15	66942828	66943023	SINE|MIR|MIRb	-	chr15	66931536	66956515	LOC102723481|NR_135687.1	-	66931536,66941899,66956339	66931824,66942151,66956515	0.500000
NCI_H460_cytosolic_fraction	chr8	80084315	80084322	80084315	-	RAMPAGE_only	7	7	13	0.450974	3.251629	chr8	80084257	80084362	LTR|ERVL-MaLR|MLT1K	+	chr8	80034867	80080831	TPD52|NM_001025252.2	-	80034867,80042619,80051526,80053281,80064477,80080314	80038235,80042668,80051628,80053430,80064593,80080831	0.923077
NCI_H460_cytosolic_fraction	chr18	80148045	80148049	80148048	+	High_confidence	125	141	222	7.701243	6.652970	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.828829
NCI_H460_cytosolic_fraction	chr1	174849250	174849253	174849250	-	High_confidence	17	17	40	1.387611	4.721928	chr1	174843226	174849243	LINE|L1|L1PA2	-	chr1	174848323	174849228	STRG.2467.1	-	174848323	174849228	0.975000
NCI_H460_cytosolic_fraction	chr1	51913872	51913916	51913915	-	RAMPAGE_only	2	2	8	0.277522	2.521641	chr1	51913771	51914133	LTR|ERVL-MaLR|MLT1H2	+	chr1	51907955	51990764	RAB3B|NM_002867.3	-	51907955,51933317,51937293,51976889,51990551	51920114,51933442,51937412,51977117,51990764	0.875000
NCI_H460_cytosolic_fraction	chr5	38468406	38468437	38468436	-	High_confidence	7	7	26	0.901947	3.938722	chr5	38468426	38468568	SINE|MIR|MIRc	-	chr5	38466167	38468429	STRG.9842.1	-	38466167,38468238	38466483,38468429	0.846154
NCI_H460_cytosolic_fraction	chr7	102973485	102973503	102973485	+	High_confidence	21	21	80	2.775223	5.570345	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973521	102988856	NFE4|ENST00000420058.1	+	102973521,102978380,102988032,102988374	102973771,102978520,102988232,102988856	0.575000
NCI_H460_cytosolic_fraction	chr17	9812942	9812943	9812942	-	High_confidence	182	198	223	7.735933	6.164169	chr17	9812619	9812902	SINE|Alu|AluJo	-	chr17	9800607	9812932	STRG.27205.2	-	9800607,9807489,9808829,9810570,9812504	9802644,9807601,9808982,9810618,9812932	0.932735
NCI_H460_cytosolic_fraction	chr19	55189489	55189525	55189496	+	RAMPAGE_only	11	12	77	2.671152	4.741303	chr19	55189325	55189693	LINE|L2|L2a	+	chr19	55191461	55192048	STRG.30963.2	+	55191461	55192048	0.792208
NCI_H460_cytosolic_fraction	chr6	33676367	33676378	33676367	+	High_confidence	10	12	29	1.006018	4.556088	chr6	33676226	33676457	SINE|MIR|MIRb	-	chr6	33676259	33696569	STRG.12003.3	+	33676259,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33683206,33684019,33684356,33684597,33684773,33685358,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33676513,33676932,33677089,33677629,33678543,33678839,33680133,33680454,33680680,33682644,33683397,33684168,33684465,33684688,33684943,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696569	1.000000
NCI_H460_cytosolic_fraction	chr5	32531809	32531865	32531864	+	High_confidence	233	236	1254	43.501616	4.858772	chr5	32531850	32532021	SINE|MIR|MIR3	-	chr5	32531632	32601323	SUB1|ENST00000506237.5	+	32531632,32588511,32591562,32598960,32601004	32531916,32588584,32591685,32599069,32601323	0.977671
NCI_H460_cytosolic_fraction	chr5	34918370	34918381	34918370	+	RAMPAGE_only	13	15	38	1.318231	4.520000	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	0.736842
NCI_H460_cytosolic_fraction	chr7	10973299	10973344	10973332	+	High_confidence	7	8	29	1.006018	4.556088	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973555	11028760	STRG.13274.7	+	10973555,10974013,10974834,10982371,10990702,11013746,11022867,11028680	10973634,10974324,10974945,10983159,10990847,11013906,11022979,11028760	0.758621
NCI_H460_cytosolic_fraction	chrX	131579095	131579123	131579095	-	High_confidence	3	3	12	0.416283	3.418296	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.833333
NCI_H460_cytosolic_fraction	chr20	8600660	8600661	8600660	+	High_confidence	15	15	20	0.693806	3.784184	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.700000
NCI_H460_cytosolic_fraction	chr12	103802081	103802082	103802081	-	RAMPAGE_only	8	8	8	0.277522	2.750000	chr12	103801868	103802059	SINE|MIR|MIR	-	chr12	103777999	103793472	NT5DC3|ENST00000415849.1	-	103777999,103780299,103785334,103785570,103787440,103788837,103793163,103793409	103778081,103780364,103785475,103785747,103787527,103788919,103793265,103793472	0.500000
NCI_H460_cytosolic_fraction	chr4	7754076	7754077	7754076	+	High_confidence	24	25	28	0.971328	4.458591	chr4	7753883	7754236	LTR|ERVL-MaLR|THE1A	+	chr4	7754089	7778928	AFAP1-AS1|NR_026892.1	+	7754089,7772203	7754159,7778928	0.964286
NCI_H460_cytosolic_fraction	chr8	51395324	51395329	51395328	+	High_confidence	15	16	23	0.797877	4.277613	chr8	51395348	51395432	LINE|L2|L2c	+	chr8	51395156	51396814	STRG.15445.1	+	51395156,51396030	51395352,51396814	0.956522
NCI_H460_cytosolic_fraction	chr15	82546441	82546442	82546441	-	RAMPAGE_only	14	15	15	0.520354	3.664498	chr15	82546117	82546394	SINE|Alu|AluSx1	-	chr15	82536749	82540564	RPS17|ENST00000330244.11	-	82536749,82538305,82538879,82539980,82540425	82536881,82538371,82538985,82540132,82540564	0.933333
NCI_H460_cytosolic_fraction	chr12	69592123	69592147	69592146	+	RAMPAGE_only	7	8	12	0.416283	3.251629	chr12	69592196	69592505	SINE|Alu|AluSp	+	chr12	69585681	69601577	CCT2|NM_001198842.1	+	69585681,69586269,69586752,69587504,69587929,69588149,69589484,69592058,69592975,69593509,69597155,69597637,69597967,69598321,69599862,69601294	69586009,69586344,69586818,69587616,69588006,69588262,69589687,69592159,69593103,69593613,69597275,69597766,69598071,69598421,69600004,69601577	1.000000
NCI_H460_cytosolic_fraction	chr3	149752626	149752660	149752639	-	High_confidence	2	2	19	0.659115	3.308271	chr3	149752625	149752732	LINE|L2|L2a	-	chr3	149738469	149752499	COMMD2|ENST00000473414.5	-	149738469,149750677,149751402,149752209,149752377	149741718,149750851,149751485,149752287,149752499	0.947368
NCI_H460_cytosolic_fraction	chr17	32479834	32479875	32479853	+	High_confidence	4	4	14	0.485664	3.392747	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.785714
NCI_H460_cytosolic_fraction	chr19	45739662	45739674	45739662	+	RAMPAGE_only	4	4	9	0.312213	3.169925	chr19	45739451	45739778	LTR|ERVL-MaLR|MLT1K	-	chr19	45745271	45756038	STRG.30663.1	+	45745271,45750674,45753650,45754478,45755969	45745321,45750786,45753788,45754724,45756038	0.555556
NCI_H460_cytosolic_fraction	chrX	7147248	7147288	7147248	+	High_confidence	2	2	10	0.346903	3.321928	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.900000
NCI_H460_cytosolic_fraction	chr2	221501623	221501637	221501623	-	High_confidence	8	8	20	0.693806	3.826875	chr2	221501442	221501654	SINE|MIR|MIRb	-	chr2	221482439	221501344	EPHA4|ENST00000463446.1	-	221482439,221501016	221482690,221501344	0.650000
NCI_H460_cytosolic_fraction	chr3	178860335	178860406	178860393	-	High_confidence	18	18	92	3.191506	5.604361	chr3	178859948	178865979	LINE|L1|L1PA2	+	chr3	178749050	178860399	STRG.7717.2	-	178749050,178859488,178860293	178749236,178859623,178860399	0.695652
NCI_H460_cytosolic_fraction	chr1	246306230	246306257	246306243	-	High_confidence	4	4	24	0.832567	4.262692	chr1	246306093	246306355	SINE|Alu|AluSz	+	chr1	245863808	246306229	STRG.3341.10	-	245863808,245915529,245927930,245929869,246186742,246305918	245863886,245915640,245928033,245929937,246186942,246306229	0.625000
NCI_H460_cytosolic_fraction	chr22	50757215	50757249	50757247	+	High_confidence	3	5	19	0.659115	3.503258	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.894737
NCI_H460_cytosolic_fraction	chr12	52221388	52221393	52221388	+	RAMPAGE_only	3	8	14	0.485664	3.026987	chr12	52221238	52221485	SINE|MIR|MIRb	-	chr12	52210929	52223813	LINC00592|NR_027358.1	+	52210929,52212043,52212598,52221976,52223445	52211020,52212156,52213027,52222028,52223813	0.928571
NCI_H460_cytosolic_fraction	chr2	37181713	37181732	37181719	-	RAMPAGE_only	4	6	13	0.450974	3.022055	chr2	37181384	37181681	SINE|Alu|AluJo	-	chr2	37167819	37188547	SULT6B1|NM_001032377.1	-	37167819,37171433,37175131,37179457,37183424,37187354,37188441	37168065,37171590,37175226,37179584,37183514,37187467,37188547	0.538462
NCI_H460_cytosolic_fraction	chr7	99410118	99410162	99410118	+	High_confidence	3	4	19	0.659115	3.530493	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.947368
NCI_H460_cytosolic_fraction	chr7	101217578	101217595	101217578	-	High_confidence	19	20	69	2.393630	5.611935	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
NCI_H460_cytosolic_fraction	chr1	23403931	23403949	23403943	-	RAMPAGE_only	12	16	41	1.422302	4.562815	chr1	23403928	23404035	LINE|RTE-BovB|MamRTE1	+	chr1	23381060	23424740	TCEA3|ENST00000450454.6	-	23381060,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23381474,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424740	0.975610
NCI_H460_cytosolic_fraction	chr22	50785210	50785261	50785239	+	RAMPAGE_only	3	3	19	0.659115	3.932138	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.736842
NCI_H460_cytosolic_fraction	chr2	233448846	233448868	233448858	+	RAMPAGE_only	11	12	23	0.797877	4.349649	chr2	233448452	233449071	LTR|ERV1|MER51A	-	chr2	233438312	233472104	DGKD|ENST00000430834.1	+	233438312,233441886,233445622,233446711,233448086,233448275,233449102,233449981,233450921,233451963,233454356,233454762,233456898,233457220,233458283,233459756,233460193,233462347,233462642,233464163,233467085,233468422,233469370	233438379,233441995,233445762,233446796,233448181,233448375,233449376,233450131,233451050,233452060,233454464,233454873,233456995,233457328,233458397,233459891,233460345,233462459,233462735,233464283,233467203,233468553,233472104	0.956522
NCI_H460_cytosolic_fraction	chr12	76319620	76319622	76319620	+	High_confidence	8	16	20	0.693806	4.037401	chr12	76319624	76325685	LINE|L1|L1PA3	+	chr12	76319810	76320307	STRG.21784.1	+	76319810	76320307	0.600000
NCI_H460_cytosolic_fraction	chr10	5291817	5291849	5291817	-	High_confidence	3	4	15	0.520354	3.521641	chr10	5291580	5291975	LTR|ERVL-MaLR|MSTD	+	chr10	5265095	5291595	STRG.17761.1	-	5265095,5271197,5272090,5275154,5277127,5278078,5282775,5283709,5284814,5285844,5291578	5266685,5271453,5273240,5275237,5277294,5278188,5282898,5283787,5284931,5286012,5291595	0.600000
NCI_H460_cytosolic_fraction	chr15	66502611	66502741	66502611	-	High_confidence	55	56	700	24.283199	6.541843	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.881429
NCI_H460_cytosolic_fraction	chr16	67099402	67099437	67099436	+	RAMPAGE_only	4	4	8	0.277522	2.750000	chr16	67099413	67099533	SINE|Alu|FLAM_C	-	chr16	67029244	67101022	CBFB|ENST00000412916.6	+	67029244,67029726,67036638,67066681,67082212,67098709	67029485,67029813,67036755,67066798,67082308,67101022	1.000000
NCI_H460_cytosolic_fraction	chr1	243269648	243269655	243269648	+	High_confidence	4	4	8	0.277522	2.500000	chr1	243269606	243269808	LINE|L1|L1MDb	-	chr1	243269135	243271032	SDCCAG8|ENST00000491888.1	+	243269135,243270091,243270977	243269200,243270257,243271032	0.500000
NCI_H460_cytosolic_fraction	chr17	51153814	51153859	51153837	+	High_confidence	4	5	19	0.659115	4.037401	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51153664	51161898	NME1|ENST00000013034.3	+	51153664,51154224,51155650,51159979,51161159,51161727	51153724,51154444,51155780,51160081,51161272,51161898	0.631579
NCI_H460_cytosolic_fraction	chr2	202965951	202965993	202965980	+	RAMPAGE_only	3	4	18	0.624425	4.087463	chr2	202965833	202966297	LTR|ERVL-MaLR|MLT1F2	-	chr2	202969716	202971961	STRG.5620.1	+	202969716,202971504	202970062,202971961	0.500000
NCI_H460_cytosolic_fraction	chr12	126936694	126936712	126936694	-	RAMPAGE_only	2	2	7	0.242832	2.584963	chr12	126936467	126937286	LTR|ERV1|LTR28B	-	chr12	126915202	127060397	LINC02405|ENST00000512624.6	-	126915202,126922706,126923029,126975838,127000555,127031866,127060086	126915449,126922959,126923205,126975917,127000650,127032066,127060397	0.857143
NCI_H460_cytosolic_fraction	chr4	39032918	39032926	39032920	-	High_confidence	17	24	40	1.387611	4.953056	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	38993734	39032922	TMEM156|ENST00000344606.6	-	38993734,38998723,39032225,39032641	38993998,38998909,39032443,39032922	0.625000
NCI_H460_cytosolic_fraction	chr1	77129077	77129078	77129077	+	High_confidence	1015	1319	1443	50.058080	5.536349	chr1	77128993	77129084	DNA|hAT-Charlie|MER58B	+	chr1	77129113	77129668	AC113935.1|ENST00000471722.1	+	77129113	77129668	0.927235
NCI_H460_cytosolic_fraction	chr9	65715005	65715047	65715023	+	High_confidence	52	63	311	10.788678	6.118738	chr9	65709351	65715424	LINE|L1|L1PA3	-	chr9	65714974	65733647	STRG.16717.16	+	65714974,65720040,65731629,65731801,65732992,65733509	65715079,65720092,65731698,65731867,65733122,65733647	0.893891
NCI_H460_cytosolic_fraction	chr22	50757120	50757130	50757126	+	High_confidence	3	3	10	0.346903	2.947703	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.700000
NCI_H460_cytosolic_fraction	chr1	46340172	46340180	46340172	+	High_confidence	3	3	12	0.416283	3.095795	chr1	46340061	46340361	SINE|Alu|AluYf1	-	chr1	46340176	46365152	NSUN4|NR_045789.1	+	46340176,46341322,46344800,46346920,46352867,46360703,46361569	46340919,46341497,46345144,46347075,46353028,46360828,46365152	0.916667
NCI_H460_cytosolic_fraction	chr7	73683420	73683443	73683420	-	High_confidence	26	26	149	5.168852	6.053826	chr7	73683365	73683430	LINE|RTE-BovB|MamRTE1	+	chr7	73680917	73683451	DNAJC30|NM_032317.2	-	73680917	73683451	0.993289
NCI_H460_cytosolic_fraction	chr3	125937024	125937059	125937024	-	High_confidence	5	5	14	0.485664	3.664498	chr3	125936638	125942696	LINE|L1|L1PA2	+	chr3	125929274	125937039	ALG1L|ENST00000340333.7	-	125929274,125930556,125931637,125932649,125933574,125936897	125929567,125930629,125931752,125932709,125933696,125937039	0.714286
NCI_H460_cytosolic_fraction	chrX	111127702	111127783	111127782	+	RAMPAGE_only	4	4	25	0.867257	4.243856	chrX	111127556	111127927	LINE|RTE-X|L4_A_Mam	+	chrX	111123103	111131514	STRG.33966.8	+	111123103,111124250	111123278,111131514	1.000000
NCI_H460_cytosolic_fraction	chr2	229586868	229586927	229586868	-	RAMPAGE_only	8	8	46	1.595753	5.147191	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229357628	229714558	DNER|ENST00000341772.4	-	229357628,229366872,229388264,229407231,229418107,229447315,229477139,229512782,229546946,229585857,229588393,229591579,229714147	229358651,229367119,229388396,229407345,229418230,229447540,229477253,229512936,229547092,229586024,229588488,229591888,229714558	0.760870
NCI_H460_cytosolic_fraction	chr3	190146784	190146866	190146807	+	RAMPAGE_only	10	10	32	1.110089	4.562500	chr3	190145009	190147904	LTR|ERV1|HERVH-int	+	chr3	190144001	190412143	STRG.7902.1	+	190144001,190144605,190144997,190146169,190151670,190170022,190172818,190265291,190290477,190314892,190404761,190408313,190409902	190144046,190144848,190145135,190147053,190151714,190170115,190172959,190265460,190290591,190315059,190404926,190408505,190412143	0.500000
NCI_H460_cytosolic_fraction	chr9	129575206	129575214	129575213	+	High_confidence	2	3	6	0.208142	2.584963	chr9	129575093	129575303	LTR|ERVL-MaLR|MLT1A0	+	chr9	129575232	129580407	STRG.17506.1	+	129575232,129580050	129575598,129580407	1.000000
NCI_H460_cytosolic_fraction	chr18	68790684	68790701	68790700	+	RAMPAGE_only	3	3	13	0.450974	3.546594	chr18	68784834	68790853	LINE|L1|L1PA2	-	chr18	68798079	69055189	CCDC102B|NM_024781.2	+	68798079,68836748,68838705,68846312,68874668,68897218,69010933,69054029	68798181,68837369,68838926,68846421,68874785,68897428,69011104,69055189	1.000000
NCI_H460_cytosolic_fraction	chrX	65620298	65620357	65620298	+	RAMPAGE_only	3	5	25	0.867257	4.293661	chrX	65614680	65620735	LINE|L1|L1PA2	-	chrX	65624724	65624992	STRG.33601.1	+	65624724	65624992	0.520000
NCI_H460_cytosolic_fraction	chr1	151166660	151166683	151166682	+	High_confidence	3	3	9	0.312213	2.500000	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	0.666667
NCI_H460_cytosolic_fraction	chr20	3795750	3795789	3795788	+	High_confidence	30	32	183	6.348322	5.922960	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	1.000000
NCI_H460_cytosolic_fraction	chr8	73661742	73661752	73661742	-	RAMPAGE_only	4	4	9	0.312213	2.947703	chr8	73661435	73662599	LINE|L1|L1ME1	-	chr8	73420368	73738327	STAU2|ENST00000522695.5	-	73420368,73422613,73552011,73582769,73595165,73603725,73613743,73615674,73617291,73673106,73688653,73738283	73421465,73422702,73552319,73582830,73595297,73603863,73613956,73615782,73617451,73673242,73688813,73738327	1.000000
NCI_H460_cytosolic_fraction	chr21	41186787	41186791	41186787	-	High_confidence	122	127	188	6.521773	5.706941	chr21	41186600	41187083	LTR|ERV1|MER66B	-	chr21	41176445	41186788	PLAC4|ENST00000440221.2	-	41176445,41180471,41186122,41186447	41176786,41180573,41186342,41186788	0.877660
NCI_H460_cytosolic_fraction	chr13	95740388	95740392	95740388	+	RAMPAGE_only	2	2	7	0.242832	2.807355	chr13	95733699	95740837	LINE|L1|L1PA2	-	chr13	95742642	95794988	STRG.23036.3	+	95742642,95757643,95760039,95760678,95763642,95763832,95785938,95787006,95790872	95742720,95757796,95760221,95760798,95763748,95763953,95786071,95787155,95794988	1.000000
NCI_H460_cytosolic_fraction	chrX	111127167	111127199	111127167	+	RAMPAGE_only	2	2	7	0.242832	2.807355	chrX	111126947	111127294	LINE|L1|L1ME4a	-	chrX	111123103	111131514	STRG.33966.8	+	111123103,111124250	111123278,111131514	1.000000
NCI_H460_cytosolic_fraction	chrX	119441030	119441090	119441030	+	RAMPAGE_only	11	12	86	2.983364	4.661678	chrX	119435468	119441493	LINE|L1|L1HS	-	chrX	119399408	119453182	SLC25A43|ENST00000493093.5	+	119399408,119410189,119452008,119452864	119399678,119410362,119452143,119453182	0.674419
NCI_H460_cytosolic_fraction	chr10	32982612	32982624	32982612	+	High_confidence	3	4	11	0.381593	3.121928	chr10	32982518	32982768	SINE|Alu|AluSz6	-	chr10	32982540	33082102	ITGB1-DT|ENST00000414157.1	+	32982540,32985622,33081341	32982685,32985757,33082102	0.545455
NCI_H460_cytosolic_fraction	chr6	82101699	82101765	82101744	-	RAMPAGE_only	13	16	115	3.989383	5.381278	chr6	82101303	82107312	LINE|L1|L1PA2	+	chr6	81845184	81933480	LINC02542|ENST00000418567.1	-	81845184,81928856,81933428	81845909,81928901,81933480	0.843478
NCI_H460_cytosolic_fraction	chr12	109881192	109881202	109881198	-	High_confidence	4	4	12	0.416283	2.845351	chr12	109881109	109881661	LTR|ERV1|MER51B	+	chr12	109850942	109880488	GLTP|NM_016433.3	-	109850942,109855618,109857525,109858682,109880271	109852737,109855769,109857659,109858741,109880488	0.833333
NCI_H460_cytosolic_fraction	chr15	91022632	91022659	91022658	+	High_confidence	3	3	12	0.416283	3.095795	chr15	91022701	91022863	SINE|Alu|AluSx3	+	chr15	91022621	91031140	VPS33B-DT|ENST00000501381.3	+	91022621,91023312,91029880,91030658	91022740,91023971,91030241,91031140	0.500000
NCI_H460_cytosolic_fraction	chr17	76611126	76611181	76611151	-	High_confidence	3	4	16	0.555045	3.323231	chr17	76611084	76611511	LTR|ERV1|LTR7	-	chr17	76606079	76610392	STRG.28581.1	-	76606079,76609143	76606408,76610392	0.625000
NCI_H460_cytosolic_fraction	chr1	188905856	188905878	188905868	+	High_confidence	3	3	8	0.277522	2.807355	chr1	188905457	188906002	LTR|ERVL|MLT2A2	+	chr1	188905687	188913113	STRG.2634.9	+	188905687,188910338	188905926,188913113	0.500000
NCI_H460_cytosolic_fraction	chr10	123162638	123162639	123162638	+	RAMPAGE_only	8	8	9	0.312213	2.750000	chr10	123162608	123162659	DNA|hAT-Ac|OldhAT1	-	chr10	123154414	123165365	BUB3|ENST00000368858.9	+	123154414,123154917,123155657,123157728,123160406,123162235,123162611,123165046	123154485,123155112,123155727,123157880,123160565,123162413,123162828,123165365	0.666667
NCI_H460_cytosolic_fraction	chr2	200887948	200887992	200887948	-	High_confidence	6	7	33	1.144779	4.726410	chr2	200887775	200888074	SINE|Alu|AluSx1	+	chr2	200871151	200887687	PPIL3|ENST00000415562.5	-	200871151,200876918,200881420,200882341,200885697,200887612	200871521,200877037,200881488,200882382,200885772,200887687	0.818182
NCI_H460_cytosolic_fraction	chr6	149896100	149896138	149896129	-	High_confidence	4	5	13	0.450974	3.251629	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149883374	149896059	RAET1E|NM_001243328.1	-	149883374,149889347,149889884,149890816,149895845	149884504,149889623,149890145,149891034,149896059	0.923077
NCI_H460_cytosolic_fraction	chr2	38086125	38086139	38086138	-	High_confidence	117	119	200	6.938057	5.309572	chr2	38083094	38086112	LTR|ERV1|HERVH-int	-	chr2	38080837	38086185	STRG.3807.4	-	38080837,38085966	38081211,38086185	0.980000
NCI_H460_cytosolic_fraction	chr17	60887022	60887071	60887070	+	High_confidence	16	22	106	3.677170	6.164013	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.933962
NCI_H460_cytosolic_fraction	chr15	69423221	69423297	69423296	+	High_confidence	6	6	34	1.179470	3.528757	chr15	69423345	69423466	SINE|MIR|MIRb	+	chr15	69422908	69436259	KIF23|ENST00000559283.1	+	69422908,69426069,69426335,69429110,69435482,69435651,69436148	69423329,69426182,69426457,69429213,69435562,69435782,69436259	0.970588
NCI_H460_cytosolic_fraction	chr10	103395884	103395905	103395892	-	High_confidence	2	2	8	0.277522	2.521641	chr10	103395615	103395992	LINE|RTE-X|L4_C_Mam	+	chr10	103389049	103396074	ATP5MD|ENST00000369811.5	-	103389049,103392190,103392370,103395745	103389166,103392283,103392466,103396074	0.875000
NCI_H460_cytosolic_fraction	chr8	98045644	98045663	98045644	+	High_confidence	7	7	19	0.659115	3.787144	chr8	98045692	98046014	SINE|Alu|AluJb	+	chr8	98045670	98047443	STRG.15805.1	+	98045670	98047443	1.000000
NCI_H460_cytosolic_fraction	chr1	75375964	75375986	75375985	-	RAMPAGE_only	3	4	9	0.312213	2.750000	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.777778
NCI_H460_cytosolic_fraction	chr17	76563877	76563976	76563877	+	RAMPAGE_only	4	5	44	1.526373	5.064869	chr17	76563801	76564058	SINE|Alu|AluSc	-	chr17	76557791	76565279	SNHG16|ENST00000590435.5	+	76557791,76558944,76561287,76563118,76563972	76557857,76559043,76561398,76563482,76565279	0.931818
NCI_H460_cytosolic_fraction	chr11	85716651	85716652	85716651	-	High_confidence	10	10	14	0.485664	3.467720	chr11	85716605	85716654	LINE|L2|L2c	+	chr11	85694995	85716524	STRG.20332.4	-	85694995,85696182,85697978,85700514,85704857,85707428,85709330,85711112,85714412,85716342	85695340,85696388,85698078,85700593,85705028,85707531,85709500,85711232,85714507,85716524	0.928571
NCI_H460_cytosolic_fraction	chr5	61019797	61019825	61019824	-	RAMPAGE_only	10	10	28	0.971328	4.235926	chr5	61019735	61020530	LINE|L1|L1MEd	-	chr5	61006257	61007318	STRG.10042.1	-	61006257	61007318	0.821429
NCI_H460_cytosolic_fraction	chr19	48445512	48445513	48445512	+	High_confidence	29	29	33	1.144779	4.601410	chr19	48445204	48445589	LTR|ERVL|LTR82A	-	chr19	48445772	48453907	GRWD1|NM_031485.3	+	48445772,48446384,48446680,48450312,48450665,48451033,48452707	48446192,48446502,48446843,48450526,48450808,48451231,48453907	0.878788
NCI_H460_cytosolic_fraction	chr1	223026593	223026628	223026627	+	High_confidence	24	24	70	2.428320	5.525502	chr1	223026591	223026741	LTR|ERV1|HERVH-int	-	chr1	223026589	223027033	STRG.2991.1	+	223026589	223027033	0.557143
NCI_H460_cytosolic_fraction	chr14	50678301	50678302	50678301	+	RAMPAGE_only	6	9	9	0.312213	2.947703	chr14	50678185	50678560	LTR|ERVL-MaLR|MLT1D	+	chr14	50743499	50745329	STRG.23598.1	+	50743499,50744074,50744293,50745042	50743552,50744196,50744410,50745329	0.888889
NCI_H460_cytosolic_fraction	chr1	153549099	153549134	153549133	-	High_confidence	23	28	80	2.775223	5.121377	chr1	153549066	153549188	SINE|MIR|MIRb	+	chr1	153547332	153549258	S100A3|NM_002960.1	-	153547332,153548344,153549180	153547846,153548490,153549258	0.975000
NCI_H460_cytosolic_fraction	chr15	66354122	66354123	66354122	-	RAMPAGE_only	28	28	28	0.971328	4.664498	chr15	66354028	66355027	LINE|L2|L2a	+	chr15	66336383	66356685	TIPIN|ENST00000566524.5	-	66336383,66341149,66349059,66349314,66352128,66352814,66356638	66337181,66341356,66349123,66349437,66352207,66352955,66356685	0.964286
NCI_H460_cytosolic_fraction	chr15	60391144	60391152	60391151	-	High_confidence	14	17	41	1.422302	4.958354	chr15	60391133	60391257	SINE|MIR|MIRc	-	chr15	60357193	60391151	ANXA2|ENST00000558986.5	-	60357193,60360940,60364428,60382341,60386027,60390212,60391107	60357236,60361054,60364523,60382441,60386086,60390317,60391151	0.560976
NCI_H460_cytosolic_fraction	chr4	39515084	39515086	39515085	-	RAMPAGE_only	6	8	11	0.381593	3.095795	chr4	39514983	39515137	SINE|Alu|AluJb	-	chr4	39498787	39526557	UGDH|ENST00000506179.5	-	39498787,39503874,39504416,39505236,39505617,39508565,39509759,39510352,39510660,39514082,39521350,39526383	39500253,39503985,39504508,39505370,39505748,39508660,39509907,39510550,39510861,39514184,39521519,39526557	0.636364
NCI_H460_cytosolic_fraction	chr10	115435120	115435155	115435148	+	High_confidence	5	5	19	0.659115	3.260785	chr10	115435029	115435292	SINE|Alu|AluY	-	chr10	115435432	115948966	STRG.18956.1	+	115435432,115461940,115467173,115469171,115519262,115549457,115727247,115847876,115944657	115435483,115462035,115467252,115469329,115519324,115549536,115727355,115847991,115948966	0.947368
NCI_H460_cytosolic_fraction	chr2	181954484	181954492	181954484	+	High_confidence	2	2	7	0.242832	2.584963	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.857143
NCI_H460_cytosolic_fraction	chr10	103181328	103181329	103181328	-	RAMPAGE_only	59	60	62	2.150798	5.539174	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.741935
NCI_H460_cytosolic_fraction	chr13	87999645	87999679	87999678	+	RAMPAGE_only	29	31	51	1.769204	5.064199	chr13	87999558	88000000	LINE|L1|L1PB4	-	chr13	88075269	88075934	STRG.23017.1	+	88075269	88075934	0.803922
NCI_H460_cytosolic_fraction	chr16	65232012	65232052	65232051	+	High_confidence	307	307	715	24.803553	7.083932	chr16	65232015	65232173	LTR|ERV1|HERVH-int	-	chr16	65231309	65393732	STRG.26459.4	+	65231309,65371096,65373442,65392993	65233403,65371185,65373583,65393732	0.981818
NCI_H460_cytosolic_fraction	chr2	200888587	200888628	200888597	-	High_confidence	27	32	106	3.677170	5.528498	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.669811
NCI_H460_cytosolic_fraction	chr2	96321273	96321298	96321295	-	RAMPAGE_only	10	10	24	0.832567	4.334963	chr2	96321082	96321284	SINE|MIR|MIRb	-	chr2	96274335	96305569	SNRNP200|NM_014014.4	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305569	0.875000
NCI_H460_cytosolic_fraction	chr11	95466179	95466191	95466190	+	High_confidence	3	4	8	0.277522	2.750000	chr11	95465992	95466384	LTR|ERVL-MaLR|MLT1J2	+	chr11	95466095	95484351	STRG.20396.1	+	95466095,95474932,95478348,95480809,95481850	95466236,95475093,95478458,95480929,95484351	1.000000
NCI_H460_cytosolic_fraction	chr6	23228616	23228633	23228616	+	High_confidence	5	5	11	0.381593	3.121928	chr6	23227561	23229347	LINE|L1|L1PBa1	-	chr6	23228789	23408279	STRG.11617.2	+	23228789,23303872,23394803,23397253,23398929,23402940,23403863	23229052,23303926,23394937,23397478,23399122,23403123,23408279	0.636364
NCI_H460_cytosolic_fraction	chr8	24682839	24682879	24682839	-	High_confidence	8	10	39	1.352921	4.885129	chr8	24682760	24682941	SINE|MIR|MIRb	-	chr8	24673319	24682816	STRG.15223.1	-	24673319,24674262,24682785	24674147,24674354,24682816	0.641026
NCI_H460_cytosolic_fraction	chr7	106285332	106285344	106285343	-	High_confidence	3	4	9	0.312213	2.750000	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106248284	106285192	NAMPT|NM_005746.2	-	106248284,106253016,106254363,106261587,106263391,106268463,106269153,106272529,106274945,106277022,106284827	106251193,106253151,106254504,106261707,106263617,106268600,106269312,106272658,106275049,106277179,106285192	0.888889
NCI_H460_cytosolic_fraction	chr20	8114487	8114518	8114499	+	High_confidence	31	31	248	8.603191	5.400894	chr20	8108866	8114917	LINE|L1|L1PA3	-	chr20	8114506	8658555	PLCB1|ENST00000630495.2	+	8114506,8141870,8150293,8371381,8628293,8646101,8647899,8649373,8657183,8658537	8114573,8141948,8150371,8371450,8628431,8646181,8647953,8649449,8657284,8658555	0.778226
NCI_H460_cytosolic_fraction	chr16	11587444	11587469	11587465	-	High_confidence	5	5	19	0.659115	3.308271	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.947368
NCI_H460_cytosolic_fraction	chr18	68790439	68790456	68790439	+	RAMPAGE_only	5	5	19	0.659115	3.531631	chr18	68784834	68790853	LINE|L1|L1PA2	-	chr18	68798079	69055189	CCDC102B|NM_024781.2	+	68798079,68836748,68838705,68846312,68874668,68897218,69010933,69054029	68798181,68837369,68838926,68846421,68874785,68897428,69011104,69055189	0.894737
NCI_H460_cytosolic_fraction	chr18	73264469	73264502	73264501	-	High_confidence	38	38	155	5.376994	6.291437	chr18	73264307	73264608	SINE|Alu|AluY	+	chr18	73154057	73264498	LOC400655|NR_034133.1	-	73154057,73159540,73161823,73200652,73255812,73264239	73155935,73159664,73161973,73200789,73255918,73264498	0.716129
NCI_H460_cytosolic_fraction	chr2	73982163	73982169	73982168	-	High_confidence	14	14	27	0.936638	3.363713	chr2	73982060	73982404	LINE|L2|L2c	-	chr2	73957966	73981439	DGUOK-AS1|NR_104030.1	-	73957966,73981134	73958207,73981439	0.925926
NCI_H460_cytosolic_fraction	chr3	139344535	139344548	139344547	+	High_confidence	207	207	575	19.946913	6.201561	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.963478
NCI_H460_cytosolic_fraction	chr3	24833022	24833086	24833085	-	RAMPAGE_only	23	23	85	2.948674	5.498786	chr3	24832901	24833733	LINE|L2|L2	+	chr3	24786469	24795527	STRG.6384.1	-	24786469,24788753,24795455	24787381,24788924,24795527	0.717647
NCI_H460_cytosolic_fraction	chr12	70550321	70550322	70550321	+	High_confidence	62	66	81	2.809913	4.947827	chr12	70549928	70550495	LINE|L2|L2c	-	chr12	70550310	70571440	STRG.21751.1	+	70550310,70557979,70569497	70550447,70558078,70571440	0.839506
NCI_H460_cytosolic_fraction	chr7	107880961	107881000	107880961	+	RAMPAGE_only	10	21	105	3.642480	5.023730	chr7	107880697	107880993	DNA|hAT-Charlie|MER1B	-	chr7	107890969	107921203	DLD|ENST00000205402.9	+	107890969,107893199,107901737,107902324,107903477,107904957,107905360,107906266,107915505,107916793,107917272,107917923,107919009,107919193	107891289,107893278,107901817,107902393,107903547,107905058,107905504,107906368,107915696,107916964,107917462,107918061,107919099,107921203	0.876190
NCI_H460_cytosolic_fraction	chr19	5680196	5680252	5680234	-	High_confidence	18	23	110	3.815931	5.649719	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.981818
NCI_H460_cytosolic_fraction	chr5	33441347	33441388	33441374	+	High_confidence	7	7	37	1.283541	4.786426	chr5	33441307	33441471	SINE|MIR|MIR3	-	chr5	33441380	33448730	TARS|ENST00000506040.1	+	33441380,33445323,33448540	33441864,33445404,33448730	0.729730
NCI_H460_cytosolic_fraction	chr2	142812180	142812344	142812332	+	High_confidence	67	69	363	12.592573	6.697237	chr2	142812303	142812784	LINE|L1|L1PA16	-	chr2	142812127	143050677	STRG.4969.4	+	142812127,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142812388,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143050677	0.972452
NCI_H460_cytosolic_fraction	chr10	132331573	132331639	132331583	-	High_confidence	3	3	15	0.520354	3.182006	chr10	132331498	132331624	LTR|ERVL|LTR16E1	-	chr10	132330280	132331831	STRG.19122.3	-	132330280,132331481	132330485,132331831	0.733333
NCI_H460_cytosolic_fraction	chr7	107580245	107580267	107580245	+	High_confidence	994	1009	4912	170.398676	7.560768	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.843852
NCI_H460_cytosolic_fraction	chr10	89285012	89285013	89285012	+	RAMPAGE_only	28	28	33	1.144779	4.640320	chr10	89284719	89285118	LTR|ERV1|LTR7	+	chr10	89283764	89292125	AL353751.1|ENST00000354541.7	+	89283764,89285035,89291986	89283891,89285264,89292125	0.575758
NCI_H460_cytosolic_fraction	chr15	101626893	101626906	101626905	-	High_confidence	8	8	19	0.659115	3.683542	chr15	101626450	101632475	LINE|L1|L1PA2	+	chr15	101603347	101626933	STRG.25538.1	-	101603347,101626447	101606035,101626933	0.842105
NCI_H460_cytosolic_fraction	chr2	142811828	142811907	142811848	+	High_confidence	20	23	121	4.197524	5.323930	chr2	142806275	142812293	LINE|L1|L1PA3	-	chr2	142812127	143050677	STRG.4969.4	+	142812127,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142812388,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143050677	0.975207
NCI_H460_cytosolic_fraction	chr7	102973265	102973291	102973290	-	High_confidence	42	42	175	6.070800	6.128492	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102811039	102973306	STRG.14375.2	-	102811039,102822039,102854776,102877466,102878330,102883304,102883567,102884213,102913085,102926273,102931880,102963532,102968021,102973149	102813531,102822203,102854860,102877593,102878450,102883467,102883685,102884312,102913215,102926374,102931933,102963665,102968117,102973306	0.942857
NCI_H460_cytosolic_fraction	chr7	22703662	22703697	22703662	+	High_confidence	45	45	97	3.364958	5.030873	chr7	22703357	22703765	LTR|ERV1|LTR7	+	chr7	22703672	22709262	STRG.13369.1	+	22703672,22708893	22703934,22709262	0.948454
NCI_H460_cytosolic_fraction	chr6	135813526	135813527	135813526	-	High_confidence	11	11	16	0.555045	3.750000	chr6	135813123	135813645	LTR|ERV1|LTR27	-	chr6	135803818	135813282	STRG.12774.1	-	135803818,135813091	135807318,135813282	0.500000
NCI_H460_cytosolic_fraction	chr1	68881694	68881767	68881766	+	High_confidence	21	24	77	2.671152	5.318816	chr1	68881807	68882267	DNA|TcMar-Tigger|Tigger1	+	chr1	68881576	68943452	AL033530.1|ENST00000646995.1	+	68881576,68942580	68882003,68943452	0.818182
NCI_H460_cytosolic_fraction	chrX	131579064	131579066	131579064	-	High_confidence	4	6	8	0.277522	2.750000	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	1.000000
NCI_H460_cytosolic_fraction	chr20	25296808	25296897	25296894	+	RAMPAGE_only	3	3	18	0.624425	3.836592	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	1.000000
NCI_H460_cytosolic_fraction	chr14	102235451	102235481	102235458	-	High_confidence	25	25	62	2.150798	5.389365	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.822581
NCI_H460_cytosolic_fraction	chr5	172454722	172454804	172454777	+	High_confidence	4	5	20	0.693806	3.684184	chr5	172454824	172454940	SINE|MIR|MIR	+	chr5	172455035	172455653	STRG.11172.1	+	172455035	172455653	0.650000
NCI_H460_cytosolic_fraction	chrX	49190807	49190873	49190851	-	RAMPAGE_only	23	24	66	2.289559	4.362772	chrX	49190482	49190814	SINE|Alu|AluJb	-	chrX	49187811	49193439	STRG.33420.1	-	49187811,49190473,49193271	49189282,49191763,49193439	0.893939
NCI_H460_cytosolic_fraction	chr1	83182243	83182408	83182243	-	High_confidence	10	10	119	4.128144	5.521863	chr1	83182174	83188201	LINE|L1|L1PA2	+	chr1	83019397	83182595	STRG.1327.1	-	83019397,83182169	83021428,83182595	0.899160
NCI_H460_cytosolic_fraction	chr10	69232551	69232588	69232551	+	RAMPAGE_only	5	6	39	1.352921	4.733870	chr10	69232519	69232745	SINE|MIR|MIRb	+	chr10	69227293	69261950	STRG.18303.1	+	69227293,69232763,69233013,69239041,69240651,69243181,69246078,69247359,69248423,69250289,69250532,69257035,69257326,69258775,69261138	69227369,69232912,69233133,69239137,69240751,69243365,69246234,69247593,69248728,69250435,69250652,69257131,69257426,69258959,69261950	0.974359
NCI_H460_cytosolic_fraction	chr10	69087553	69087584	69087553	+	High_confidence	2	2	17	0.589735	3.175123	chr10	69087249	69087558	SINE|Alu|AluSx	+	chr10	69087445	69104811	SRGN|NM_001321053.1	+	69087445,69088027,69097083,69103870	69087660,69088236,69097231,69104811	1.000000
NCI_H460_cytosolic_fraction	chr18	1522237	1522241	1522239	-	High_confidence	12	20	26	0.901947	4.286790	chr18	1516189	1522240	LINE|L1|L1PA2	-	chr18	1513897	1522232	STRG.28765.1	-	1513897,1514276,1522143	1514047,1514413,1522232	0.807692
NCI_H460_cytosolic_fraction	chr12	8681676	8681677	8681676	+	High_confidence	37	37	51	1.769204	5.069388	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.941176
NCI_H460_cytosolic_fraction	chr19	51350355	51350375	51350363	-	RAMPAGE_only	5	6	19	0.659115	2.974938	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.947368
NCI_H460_cytosolic_fraction	chr4	110411029	110411061	110411029	+	RAMPAGE_only	2	2	10	0.346903	3.321928	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110365732	110506258	ENPEP|ENST00000510961.1	+	110365732,110488540,110491032,110500028,110506182	110365804,110488682,110491164,110500163,110506258	0.900000
NCI_H460_cytosolic_fraction	chr19	571748	571771	571754	-	High_confidence	8	10	30	1.040709	4.450212	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.833333
NCI_H460_cytosolic_fraction	chr13	52661502	52661531	52661502	+	RAMPAGE_only	3	3	12	0.416283	3.251629	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
NCI_H460_cytosolic_fraction	chr5	75696126	75696165	75696164	-	RAMPAGE_only	5	5	11	0.381593	2.732159	chr5	75695698	75701728	LINE|L1|L1PA3	+	chr5	75674430	75689604	STRG.10233.7	-	75674430,75677773,75685206,75689011,75689585	75674578,75677950,75685484,75689165,75689604	0.727273
NCI_H460_cytosolic_fraction	chr9	93448446	93448452	93448451	-	RAMPAGE_only	5	5	9	0.312213	2.503258	chr9	93448211	93448518	SINE|Alu|AluSz	+	chr9	93446923	93451208	FAM120AOS|ENST00000483056.5	-	93446923,93448368,93450478,93450944	93447697,93448489,93450599,93451208	1.000000
NCI_H460_cytosolic_fraction	chr3	179325302	179325303	179325302	+	High_confidence	4	4	7	0.242832	2.521641	chr3	179325011	179325319	SINE|Alu|AluSp	-	chr3	179325152	179333829	ZNF639|ENST00000466264.5	+	179325152,179327560,179328282,179329617,179332988,179333268	179325322,179327631,179328351,179329728,179333123,179333829	1.000000
NCI_H460_cytosolic_fraction	chr2	73736756	73736757	73736756	-	High_confidence	30	31	35	1.214160	4.491443	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73729889	73737335	STRG.4215.6	-	73729889,73730559,73732162,73734428,73737301	73730029,73730736,73732285,73734588,73737335	0.971429
NCI_H460_cytosolic_fraction	chr7	22562052	22562089	22562052	+	RAMPAGE_only	11	12	51	1.769204	5.308758	chr7	22561901	22562080	DNA|hAT-Charlie|MER5A	+	chr7	22563336	22573889	STRG.13358.1	+	22563336,22564965,22570342,22571774,22572084	22563430,22565152,22571093,22572013,22573889	0.882353
NCI_H460_cytosolic_fraction	chr8	75278426	75278439	75278429	-	High_confidence	6	6	16	0.555045	3.906891	chr8	75278367	75284402	LINE|L1|L1PA4	+	chr8	75223403	75278461	CASC9|ENST00000504531.2	-	75223403,75276986,75278356	75224358,75277090,75278461	0.687500
NCI_H460_cytosolic_fraction	chrX	16712906	16712979	16712922	-	High_confidence	9	10	53	1.838585	4.779531	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	1.000000
NCI_H460_cytosolic_fraction	chr5	160199150	160199156	160199155	+	High_confidence	55	74	103	3.573099	4.751896	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.961165
NCI_H460_cytosolic_fraction	chr17	19749351	19749352	19749351	-	High_confidence	20	21	24	0.832567	4.175736	chr17	19749293	19749417	LINE|L2|L2a	+	chr17	19743231	19748943	ALDH3A1|ENST00000574162.5	-	19743231,19744967,19747901,19748798	19743463,19745134,19748216,19748943	0.666667
NCI_H460_cytosolic_fraction	chr10	93496875	93496902	93496875	+	High_confidence	5	5	13	0.450974	3.418296	chr10	93496847	93496980	SINE|MIR|MIRb	-	chr10	93496631	93529092	CEP55|ENST00000371485.7	+	93496631,93500039,93503112,93506987,93515404,93516934,93518876,93519681,93527949	93496923,93500234,93503388,93507056,93515555,93517248,93518948,93519807,93529092	0.923077
NCI_H460_cytosolic_fraction	chr20	54208557	54208558	54208557	+	High_confidence	7	10	10	0.346903	2.921928	chr20	54208550	54208675	SINE|MIR|MIR3	-	chr20	54208311	54219203	PFDN4|ENST00000487129.1	+	54208311,54208834,54214350,54215299,54219018	54208558,54208915,54214458,54215440,54219203	0.700000
NCI_H460_cytosolic_fraction	chr3	11225905	11225928	11225927	-	High_confidence	44	44	292	10.129563	6.194291	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11193189	11225937	STRG.6224.1	-	11193189,11194992,11225699	11193887,11195204,11225937	0.900685
NCI_H460_cytosolic_fraction	chr5	67064143	67064144	67064143	+	RAMPAGE_only	7	7	9	0.312213	3.169925	chr5	67063782	67064326	LINE|L2|L2	-	chr5	67004751	67104575	MAST4|ENST00000447738.1	+	67004751,67054403,67090161,67095596,67100434,67102506,67104365	67005085,67054492,67090231,67095675,67100592,67102611,67104575	0.888889
NCI_H460_cytosolic_fraction	chr14	76948718	76948744	76948743	-	High_confidence	7	9	29	1.006018	4.208410	chr14	76948467	76948832	LTR|ERVL|LTR33	+	chr14	76928067	76948746	STRG.24014.1	-	76928067,76928424,76948643	76928223,76928513,76948746	0.620690
NCI_H460_cytosolic_fraction	chr14	101723342	101723343	101723342	+	RAMPAGE_only	7	9	11	0.381593	3.277613	chr14	101723133	101723569	LTR|ERVL|MLT2A2	+	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	1.000000
NCI_H460_cytosolic_fraction	chr17	55732816	55732824	55732823	+	RAMPAGE_only	3	5	10	0.346903	3.169925	chr17	55732847	55732973	LINE|L2|L2c	+	chr17	55750978	55777374	PCTP|ENST00000268896.9	+	55750978,55767334,55771105,55773723,55774791,55776034	55751244,55767452,55771185,55773895,55774859,55777374	0.900000
NCI_H460_cytosolic_fraction	chr18	7047122	7047159	7047158	-	RAMPAGE_only	12	12	34	1.179470	4.210765	chr18	7047041	7047341	SINE|Alu|AluSc8	-	chr18	6941947	7117759	LAMA1|ENST00000579014.5	-	6941947,6943179,6947162,6948402,6949100,6950781,6955352,6956635,6958476,6959340,6961585,6961944,6964661,6965287,6966146,6971856,6973056,6974902,6975936,6977726,6978195,6980520,6982496,6983098,6985236,6985526,6986136,6992560,6993640,6995356,6997741,6999444,6999910,7002263,7007138,7008487,7009238,7010199,7011299,7011994,7013814,7015721,7016490,7017277,7023163,7024379,7025978,7032065,7032983,7034478,7035986,7037577,7038809,7040075,7042144,7044721,7046277,7049077,7050693,7079974,7080286,7117659	6942239,6943402,6947296,6948556,6949259,6950971,6955465,6956765,6958662,6959492,6961759,6962059,6964803,6965432,6966297,6971981,6973207,6975036,6976080,6977881,6978378,6980637,6982590,6983234,6985400,6985643,6986347,6992720,6993752,6995446,6997884,6999638,6999997,7002385,7007276,7008608,7009366,7010385,7011479,7012138,7014051,7015858,7016671,7017384,7023375,7024466,7026106,7032176,7033095,7034690,7036088,7037751,7038950,7040236,7043405,7044839,7046367,7049257,7050936,7080087,7080457,7117759	0.764706
NCI_H460_cytosolic_fraction	chr6	23228869	23228891	23228890	+	High_confidence	7	8	27	0.936638	4.236369	chr6	23227561	23229347	LINE|L1|L1PBa1	-	chr6	23228789	23408279	STRG.11617.2	+	23228789,23303872,23394803,23397253,23398929,23402940,23403863	23229052,23303926,23394937,23397478,23399122,23403123,23408279	0.925926
NCI_H460_cytosolic_fraction	chr6	149895941	149895968	149895954	-	High_confidence	5	5	21	0.728496	4.070656	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	1.000000
NCI_H460_cytosolic_fraction	chr6	87329277	87329278	87329277	-	High_confidence	10	10	14	0.485664	3.238901	chr6	87323278	87329278	LINE|L1|L1PA3	-	chr6	87282977	87329278	GJB7|ENST00000525899.5	-	87282977,87322865,87329137	87284939,87323043,87329278	0.785714
NCI_H460_cytosolic_fraction	chr12	52221338	52221351	52221338	+	RAMPAGE_only	8	8	13	0.450974	2.584963	chr12	52221238	52221485	SINE|MIR|MIRb	-	chr12	52210929	52223813	LINC00592|NR_027358.1	+	52210929,52212043,52212598,52221976,52223445	52211020,52212156,52213027,52222028,52223813	0.923077
NCI_H460_cytosolic_fraction	chr11	57739149	57739258	57739257	+	RAMPAGE_only	3	3	29	1.006018	4.021268	chr11	57739290	57739437	SINE|MIR|MIR	+	chr11	57712613	57740969	TMX2|ENST00000529403.1	+	57712613,57737607,57737835,57738353,57738663,57738973,57739130,57740098	57712807,57737668,57738026,57738430,57738770,57739039,57739260,57740969	0.896552
NCI_H460_cytosolic_fraction	chr9	33306327	33306377	33306376	+	RAMPAGE_only	7	7	12	0.416283	3.188722	chr9	33306214	33306550	LINE|L2|L2c	-	chr9	33290544	33348723	NFX1|ENST00000318524.6	+	33290544,33294419,33301262,33303190,33307193,33311105,33313653,33318730,33318909,33328580,33332471,33338509,33342745,33344068,33347037,33347662	33290597,33295427,33301421,33303268,33307299,33311177,33313793,33318830,33319127,33328678,33332502,33338589,33342854,33344188,33347117,33348723	0.916667
NCI_H460_cytosolic_fraction	chr17	59892716	59892746	59892716	-	High_confidence	14	15	67	2.324249	5.530060	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.895522
NCI_H460_cytosolic_fraction	chr4	89490948	89490949	89490948	+	High_confidence	99	99	102	3.538409	5.414823	chr4	89489873	89491365	LTR|ERV1|LTR12C	+	chr4	89491197	89536765	STRG.8863.1	+	89491197,89536701	89491494,89536765	0.637255
NCI_H460_cytosolic_fraction	chr7	141737464	141737476	141737468	+	High_confidence	3	3	12	0.416283	3.022055	chr7	141736645	141737590	DNA|TcMar-Tigger|Tigger3b	+	chr7	141738320	141750461	SSBP1|ENST00000265304.10	+	141738320,141739123,141742168,141743560,141743901,141745495,141750310	141738410,141739190,141742229,141743701,141743989,141745584,141750461	1.000000
NCI_H460_cytosolic_fraction	chr17	41871790	41871820	41871819	-	RAMPAGE_only	5	5	18	0.624425	4.058814	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.666667
NCI_H460_cytosolic_fraction	chr7	116724043	116724122	116724121	+	High_confidence	46	52	365	12.661954	6.174127	chr7	116718497	116724489	LINE|L1|L1PA2	-	chr7	116724145	116755414	MET|ENST00000495962.1	+	116724145,116724771,116731667,116739949,116740851,116755354	116724249,116724847,116731859,116740084,116741025,116755414	0.649315
NCI_H460_cytosolic_fraction	chr1	237471094	237471167	237471146	+	High_confidence	40	40	96	3.330267	6.111858	chr1	237470691	237471420	LTR|ERV1|LTR9A1	-	chr1	237471177	237591785	STRG.3261.1	+	237471177,237491805,237492953,237496510,237500710,237503288,237506709,237511687,237530426,237548430,237550543,237566566,237569144,237589792,237590639,237591738	237471351,237491924,237493087,237496752,237500903,237503505,237506814,237511791,237530510,237548590,237550691,237566775,237569319,237590001,237590992,237591785	0.833333
NCI_H460_cytosolic_fraction	chr1	235110627	235110628	235110627	-	RAMPAGE_only	7	7	10	0.346903	2.947703	chr1	235110540	235110668	SINE|MIR|MIR3	-	chr1	235109335	235128936	TOMM20|ENST00000366607.4	-	235109335,235113767,235119817,235122325,235128594	235112108,235113910,235119899,235122372,235128936	0.900000
NCI_H460_cytosolic_fraction	chr1	68881341	68881430	68881419	+	High_confidence	9	9	49	1.699824	3.843632	chr1	68875777	68881805	LINE|L1|L1PA2	-	chr1	68881576	68943452	AL033530.1|ENST00000646995.1	+	68881576,68942580	68882003,68943452	0.979592
NCI_H460_cytosolic_fraction	chr6	43013392	43013393	43013392	-	High_confidence	51	51	64	2.220178	5.227642	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.937500
NCI_H460_cytosolic_fraction	chr2	71417037	71417103	71417045	+	RAMPAGE_only	5	5	38	1.318231	4.984770	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.947368
NCI_H460_cytosolic_fraction	chr4	173369507	173369534	173369526	-	High_confidence	15	16	53	1.838585	4.766370	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363779	173370446	AC097534.2|ENST00000609153.1	-	173363779,173369433,173370291	173364198,173369610,173370446	0.773585
NCI_H460_cytosolic_fraction	chr1	15323051	15323096	15323051	-	High_confidence	4	4	26	0.901947	4.243856	chr1	15322831	15323185	LTR|ERVL-MaLR|THE1A	-	chr1	15316910	15323041	STRG.288.2	-	15316910,15322907	15317409,15323041	0.807692
NCI_H460_cytosolic_fraction	chr1	234433726	234433753	234433752	-	RAMPAGE_only	5	5	12	0.416283	3.277613	chr1	234433699	234433896	LINE|L2|L2c	+	chr1	234391312	234479103	TARBP1|ENST00000040877.1	-	234391312,234392415,234393361,234393645,234398381,234401180,234405902,234410444,234418083,234420701,234425672,234427316,234427575,234429135,234429415,234430086,234433409,234437274,234446802,234448479,234450427,234457666,234459229,234460260,234463836,234465655,234467501,234471187,234472713,234478172	234391745,234392552,234393486,234393837,234398553,234401262,234406099,234410531,234418233,234420812,234425793,234427388,234427766,234429324,234429677,234430301,234433571,234437372,234446975,234448579,234450566,234457756,234459326,234460396,234463934,234465708,234467650,234471257,234472811,234479103	0.833333
NCI_H460_cytosolic_fraction	chr16	65053813	65053866	65053813	-	RAMPAGE_only	8	9	51	1.769204	4.601227	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.823529
NCI_H460_cytosolic_fraction	chr10	102449836	102449845	102449838	+	High_confidence	17	38	57	1.977346	4.718403	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449840	102456297	STRG.18837.2	+	102449840,102455336	102450330,102456297	0.964912
NCI_H460_cytosolic_fraction	chr16	2769863	2769878	2769877	+	High_confidence	9	10	19	0.659115	3.681881	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2770934	SRRM2|ENST00000574866.1	+	2769894,2770351,2770603,2770857	2770227,2770465,2770717,2770934	0.894737
NCI_H460_cytosolic_fraction	chr12	104287602	104287643	104287636	+	High_confidence	4	4	18	0.624425	3.734522	chr12	104287561	104287720	SINE|MIR|MIRc	-	chr12	104287367	104348644	TXNRD1|ENST00000524698.5	+	104287367,104288930,104311289,104313244,104315776,104318912,104319469,104321090,104325336,104326346,104327514,104331533,104334236,104339138,104348352	104287431,104289040,104311412,104313317,104315896,104319055,104319585,104321316,104325429,104326423,104327671,104331641,104334332,104339273,104348644	0.777778
NCI_H460_cytosolic_fraction	chr11	119046623	119046663	119046623	-	RAMPAGE_only	1	1	9	0.312213	2.500000	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.888889
NCI_H460_cytosolic_fraction	chrX	23883670	23883717	23883707	-	High_confidence	7	7	27	0.936638	4.563856	chrX	23883103	23883918	LTR|ERV1|LTR1A1	+	chrX	23856355	23884019	APOO|ENST00000633372.1	-	23856355,23858641,23868592,23874402,23878914,23880844,23883358	23856382,23858733,23868688,23874457,23879034,23880952,23884019	0.629630
NCI_H460_cytosolic_fraction	chr5	150639511	150639526	150639525	+	High_confidence	3	5	6	0.208142	2.584963	chr5	150639529	150639745	SINE|MIR|MIRb	+	chr5	150639992	150654728	STRG.11026.6	+	150639992,150647943	150640134,150654728	1.000000
NCI_H460_cytosolic_fraction	chr5	167660348	167660389	167660380	-	High_confidence	8	8	21	0.728496	4.084184	chr5	167660180	167660492	SINE|Alu|AluYm1	+	chr5	167653227	167660481	AC008708.2|ENST00000522956.1	-	167653227,167660057	167653927,167660481	0.952381
NCI_H460_cytosolic_fraction	chr2	6918666	6918680	6918666	-	High_confidence	20	23	65	2.254868	5.185624	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6912389	6918663	STRG.3443.2	-	6912389,6914192,6915822,6916815,6918401	6913664,6914350,6915967,6917224,6918663	0.523077
NCI_H460_cytosolic_fraction	chr14	91462124	91462216	91462209	-	High_confidence	6	6	55	1.907966	4.219791	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.927273
NCI_H460_cytosolic_fraction	chr2	179051654	179051691	179051690	-	RAMPAGE_only	5	5	12	0.416283	3.277613	chr2	179051586	179051988	LTR|ERV1|LTR7	-	chr2	178872132	179050086	CCDC141|ENST00000446116.5	-	178872132,178877963,178884900,178886751,178888526,178905328,178944534,178961229,178975056,178978483,179047283,179049839	178872312,178878143,178885092,178886871,178888668,178905501,178944651,178961483,178975165,178978675,179047406,179050086	0.916667
NCI_H460_cytosolic_fraction	chr11	123469402	123469415	123469402	+	RAMPAGE_only	30	33	50	1.734514	3.727585	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123480737	123594838	GRAMD1B|ENST00000633087.1	+	123480737,123577366,123584311,123594081,123594734	123480893,123577577,123584332,123594166,123594838	0.860000
NCI_H460_cytosolic_fraction	chr8	75324289	75324353	75324331	-	High_confidence	112	114	604	20.952932	6.959758	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223702	75324741	CASC9|ENST00000522183.1	-	75223702,75324564	75224358,75324741	0.571192
NCI_H460_cytosolic_fraction	chr8	128415365	128415455	128415365	-	High_confidence	3	3	27	0.936638	4.356558	chr8	128415090	128415709	LINE|L2|L2a	+	chr8	128406260	128415381	LINC00824|ENST00000517583.1	-	128406260,128406775,128414213,128414540,128415365	128406633,128406846,128414408,128414690,128415381	0.592593
NCI_H460_cytosolic_fraction	chr1	33021434	33021458	33021434	-	High_confidence	2	2	10	0.346903	2.921928	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33021690	STRG.677.6	-	33010477,33012073,33014521,33021366,33021592	33010833,33013402,33014594,33021461,33021690	1.000000
NCI_H460_cytosolic_fraction	chr11	104969371	104969386	104969371	-	High_confidence	2	2	9	0.312213	2.500000	chr11	104968961	104971180	LINE|L1|L1PA10	+	chr11	104951027	104969366	CASP4|ENST00000417440.2	-	104951027,104951895,104954746,104968518,104969249	104951098,104952005,104955001,104968728,104969366	0.888889
NCI_H460_nuclear_fraction	chr4	75127224	75127272	75127263	-	RAMPAGE_only	24	41	173	8.271227	5.258138	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.919075
NCI_H460_nuclear_fraction	chr6	56621106	56621134	56621106	-	RAMPAGE_only	3	3	9	0.430295	2.750000	chr6	56621009	56621116	SINE|MIR|MIR3	-	chr6	56614575	56642889	MSTRG.34402.23	-	56614575,56617985,56620800,56625156,56627203,56627998,56629249,56630244,56631210,56631882,56632853,56634131,56634461,56634800,56635588,56636556,56639258,56639449,56639695,56639928,56640142,56641946,56642409,56642621	56617418,56620715,56624628,56625264,56627287,56628161,56629443,56630383,56631389,56632040,56633037,56634258,56634616,56634953,56635714,56636652,56639363,56639611,56639773,56640057,56640605,56642101,56642503,56642889	0.888889
NCI_H460_nuclear_fraction	chrX	7147265	7147288	7147265	+	High_confidence	3	3	10	0.478106	2.921928	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	1.000000
NCI_H460_nuclear_fraction	chr10	103181328	103181329	103181328	-	High_confidence	93	95	105	5.020109	6.120972	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103098970	103181465	MSTRG.5472.12	-	103098970,103099925,103100751,103101044,103101234,103105705,103106588,103139405,103174857,103181230	103098984,103100019,103100943,103101102,103101326,103105801,103106706,103139479,103174982,103181465	0.609524
NCI_H460_nuclear_fraction	chr10	2545459	2545460	2545459	+	High_confidence	14	14	18	0.860590	3.734522	chr10	2545347	2545657	SINE|Alu|AluY	-	chr10	2546367	2546778	MSTRG.4120.1	+	2546367	2546778	0.722222
NCI_H460_nuclear_fraction	chr18	63702374	63702375	63702374	+	High_confidence	20	21	23	1.099643	4.061482	chr18	63702310	63702603	SINE|Alu|AluSg	+	chr18	63702303	63723893	SERPINB11|NM_080475.3	+	63702303,63702850,63710178,63711334,63712564,63716034,63720012,63720830,63722994	63702377,63703006,63710361,63711394,63712693,63716152,63720155,63720986,63723893	0.608696
NCI_H460_nuclear_fraction	chr9	120471804	120471824	120471823	-	RAMPAGE_only	2	2	8	0.382485	2.807355	chr9	120471770	120471851	LINE|L2|L2	+	chr9	120389195	120580005	CDK5RAP2|ENST00000480112.5	-	120389195,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120460571,120467859,120470110,120471747,120477349,120487293,120491306,120518426,120524985,120527805,120528743,120529977,120536371,120539040,120545713,120550791,120568320,120571976,120579919	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120460747,120467997,120470220,120471878,120477450,120487437,120491477,120518645,120525078,120527925,120528797,120530140,120536526,120539164,120545790,120550902,120568388,120572041,120580005	0.875000
NCI_H460_nuclear_fraction	chr3	158128225	158128240	158128234	+	RAMPAGE_only	3	5	11	0.525916	2.921928	chr3	158128106	158128484	LINE|L1|L1M4	-	chr3	158110155	158469732	RSRC1|ENST00000471911.5	+	158110155,158122102,158123865,158298038,158354856,158460934,158469343	158110211,158122298,158123991,158298075,158354908,158461009,158469732	0.545455
NCI_H460_nuclear_fraction	chr17	30968780	30968789	30968788	+	High_confidence	11	20	43	2.055854	4.053298	chr17	30968749	30968853	LINE|L2|L2	-	chr17	30968784	30970307	RNF135|ENST00000582674.1	+	30968784,30970277	30969335,30970307	0.813953
NCI_H460_nuclear_fraction	chr1	15323062	15323068	15323067	-	High_confidence	6	7	13	0.621537	3.022055	chr1	15322831	15323185	LTR|ERVL-MaLR|THE1A	-	chr1	15316675	15323035	MSTRG.427.1	-	15316675,15322907	15317409,15323035	0.615385
NCI_H460_nuclear_fraction	chr7	151472440	151472457	151472440	-	High_confidence	4	4	12	0.573727	3.251629	chr7	151472225	151472443	LINE|L2|L2a	+	chr7	151470298	151471803	RHEB|ENST00000470072.1	-	151470298,151471393	151470652,151471803	0.666667
NCI_H460_nuclear_fraction	chr2	38082965	38083054	38082992	+	High_confidence	56	61	274	13.100094	6.317071	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.974453
NCI_H460_nuclear_fraction	chr20	3795750	3795789	3795788	+	High_confidence	17	17	97	4.637625	5.485612	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.969072
NCI_H460_nuclear_fraction	chr6	63442101	63442102	63442101	-	High_confidence	5	6	7	0.334674	2.584963	chr6	63441883	63443495	LTR|ERV1|LTR12C	-	chr6	63378788	63442336	MSTRG.34431.3	-	63378788,63382364,63404505,63441714	63379466,63382556,63404601,63442336	0.714286
NCI_H460_nuclear_fraction	chr15	51868910	51868935	51868910	+	RAMPAGE_only	6	6	17	0.812780	3.852169	chr15	51868690	51868984	SINE|Alu|AluSx1	+	chr15	51875025	51929454	TMOD3|ENST00000560549.5	+	51875025,51887588,51889055,51893814,51896418,51900154,51901891,51908775,51911013,51916014,51921495,51929432	51875270,51887711,51889145,51893945,51896526,51900298,51902036,51908862,51911152,51916133,51921616,51929454	0.823529
NCI_H460_nuclear_fraction	chr14	26678977	26678997	26678986	+	High_confidence	22	27	67	3.203308	4.607000	chr14	26673315	26679374	LINE|L1|L1PA2	-	chr14	26679229	26724794	MSTRG.11132.1	+	26679229,26724747	26679398,26724794	0.626866
NCI_H460_nuclear_fraction	chr15	21273363	21273364	21273363	-	RAMPAGE_only	5	7	7	0.334674	2.521641	chr15	21273139	21273669	LTR|ERVL|LTR33A_	+	chr15	20646315	21270957	MSTRG.12442.1	-	20646315,20669467,20671112,21252460,21270768	20646461,20669637,20671268,21252566,21270957	0.571429
NCI_H460_nuclear_fraction	chr2	171433111	171433132	171433111	-	High_confidence	2	2	8	0.382485	2.807355	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.500000
NCI_H460_nuclear_fraction	chr1	188897570	188897571	188897570	-	High_confidence	53	53	59	2.820823	4.929210	chr1	188897114	188897907	LTR|ERV1|LTR12	-	chr1	188896762	188897337	MSTRG.3165.1	-	188896762	188897337	0.847458
NCI_H460_nuclear_fraction	chr4	168558527	168558554	168558548	-	High_confidence	3	3	13	0.621537	3.418296	chr4	168557525	168558644	LTR|ERV1|LTR78	-	chr4	168490350	168558610	MSTRG.31132.19	-	168490350,168492665,168537640,168558506	168490450,168492885,168537786,168558610	0.615385
NCI_H460_nuclear_fraction	chr17	4143199	4143244	4143199	+	High_confidence	79	89	211	10.088029	5.169863	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.985782
NCI_H460_nuclear_fraction	chr18	68790689	68790781	68790742	+	RAMPAGE_only	62	64	217	10.374892	6.308371	chr18	68784834	68790853	LINE|L1|L1PA2	-	chr18	68798079	69055189	CCDC102B|NM_024781.2	+	68798079,68836748,68838705,68846312,68874668,68897218,69010933,69054029	68798181,68837369,68838926,68846421,68874785,68897428,69011104,69055189	0.635945
NCI_H460_nuclear_fraction	chr8	128565271	128565313	128565295	-	High_confidence	6	7	18	0.860590	3.381580	chr8	128564906	128565249	LINE|L2|L2b	-	chr8	128405268	128565563	MSTRG.39221.1	-	128405268,128406775,128414213,128414540,128416715,128421742,128423500,128427657,128561069,128564228	128406633,128406846,128414408,128415992,128420823,128421814,128423593,128428384,128561126,128565563	0.944444
NCI_H460_nuclear_fraction	chr14	21360449	21360460	21360449	-	RAMPAGE_only	2	2	8	0.382485	2.521641	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351478	21358402	SUPT16H|ENST00000557394.5	-	21351478,21353487,21353702,21354410,21357196,21357926	21352818,21353565,21353832,21354540,21357366,21358402	0.750000
NCI_H460_nuclear_fraction	chr8	128581716	128581729	128581716	-	High_confidence	5	5	14	0.669348	3.026987	chr8	128581536	128581727	SINE|MIR|MIR3	-	chr8	128576397	128582150	MSTRG.39219.1	-	128576397,128582088	128582048,128582150	0.928571
NCI_H460_nuclear_fraction	chr12	104287706	104287759	104287706	+	High_confidence	14	17	45	2.151475	5.277613	chr12	104287727	104287918	SINE|MIR|MIR	+	chr12	104287367	104348644	TXNRD1|ENST00000524698.5	+	104287367,104288930,104311289,104313244,104315776,104318912,104319469,104321090,104325336,104326346,104327514,104331533,104334236,104339138,104348352	104287431,104289040,104311412,104313317,104315896,104319055,104319585,104321316,104325429,104326423,104327671,104331641,104334332,104339273,104348644	0.644444
NCI_H460_nuclear_fraction	chr7	1571015	1571024	1571015	-	High_confidence	8	9	16	0.764969	3.640224	chr7	1570731	1571033	SINE|Alu|AluSx	-	chr7	1567612	1571005	PSMG3|ENST00000252329.3	-	1567612,1569123,1570473	1567850,1569360,1571005	0.875000
NCI_H460_nuclear_fraction	chr4	73104198	73104245	73104198	-	High_confidence	177	184	459	21.945048	7.325290	chr4	73103951	73104200	DNA|hAT-Charlie|Charlie2b	-	chr4	73075685	73104228	MSTRG.30297.4	-	73075685,73076939,73077354,73078641,73085248,73090666,73094078,73095456,73097116,73098072,73102375,73104002	73076290,73077104,73077533,73078890,73085446,73092300,73094228,73095574,73097272,73098520,73102547,73104228	0.775599
NCI_H460_nuclear_fraction	chr10	121974539	121974579	121974539	-	High_confidence	2	2	9	0.430295	2.947703	chr10	121974357	121974506	DNA|hAT-Charlie|MER5A	-	chr10	121967377	121974788	NSMCE4A|ENST00000481320.5	-	121967377,121970938,121974003	121967806,121971069,121974788	0.888889
NCI_H460_nuclear_fraction	chr5	173746176	173746211	173746176	-	High_confidence	7	10	24	1.147454	4.368523	chr5	173745880	173746596	LTR|ERV1|MER4A	+	chr5	173719245	173746211	LINC01484|ENST00000518902.1	-	173719245,173746019	173719543,173746211	0.583333
NCI_H460_nuclear_fraction	chr13	109585762	109585781	109585780	-	High_confidence	18	18	34	1.625559	3.463366	chr13	109585658	109585872	LINE|L1|L1ME3A	-	chr13	109584907	109585460	MSTRG.10836.1	-	109584907	109585460	0.882353
NCI_H460_nuclear_fraction	chr8	17255405	17255446	17255405	+	RAMPAGE_only	3	3	12	0.573727	3.022055	chr8	17255193	17255484	SINE|Alu|AluSq2	+	chr8	17247122	17295052	VPS37A|ENST00000521829.5	+	17247122,17268257,17268855,17274732,17276396,17280027,17280238,17280374,17284472,17286346,17294986	17247369,17268372,17268956,17274958,17276467,17280155,17280297,17280443,17284616,17286427,17295052	0.916667
NCI_H460_nuclear_fraction	chr1	205889968	205890003	205890002	+	High_confidence	3	3	10	0.478106	2.947703	chr1	205889852	205890317	LTR|ERV1|HERVH-int	-	chr1	205890019	205896087	LOC284581|NR_046098.1	+	205890019,205891155,205894466	205890486,205891309,205896087	0.700000
NCI_H460_nuclear_fraction	chr16	29264578	29264610	29264594	-	High_confidence	2	2	10	0.478106	3.169925	chr16	29264339	29264630	LINE|L1|L1MC1	-	chr16	29262272	29264479	AC009093.4|ENST00000567984.1	-	29262272,29264329	29262683,29264479	0.700000
NCI_H460_nuclear_fraction	chr7	36439954	36439994	36439993	+	RAMPAGE_only	2	2	12	0.573727	3.095795	chr7	36439807	36440036	LINE|L2|L2c	-	chr7	36422722	36453655	MSTRG.35993.12	+	36422722,36423816,36424544,36424685,36425701,36426014,36426915,36439203,36449664,36452476	36422809,36423943,36424593,36424742,36425740,36426036,36427028,36443862,36449837,36453655	0.916667
NCI_H460_nuclear_fraction	chr5	33441368	33441415	33441414	+	High_confidence	26	26	152	7.267206	6.301938	chr5	33441307	33441471	SINE|MIR|MIR3	-	chr5	33441380	33448730	TARS|ENST00000506040.1	+	33441380,33445323,33448540	33441864,33445404,33448730	0.677632
NCI_H460_nuclear_fraction	chr17	355344	355381	355380	+	High_confidence	35	40	87	4.159519	5.396558	chr17	355237	355620	LTR|ERVL-MaLR|MLT1K	+	chr17	354600	357425	MSTRG.16136.4	+	354600,356241	355816,357425	0.655172
NCI_H460_nuclear_fraction	chr19	53865359	53865398	53865359	+	High_confidence	23	26	77	3.681413	5.460108	chr19	53865313	53865624	SINE|Alu|AluSx	-	chr19	53865364	53874256	MSTRG.21396.2	+	53865364,53869753,53873527	53865737,53869838,53874256	0.805195
NCI_H460_nuclear_fraction	chr20	37382338	37382341	37382338	+	High_confidence	4	4	9	0.430295	3.000000	chr20	37382266	37382416	SINE|MIR|MIR	-	chr20	37382603	37405432	SRC|ENST00000358208.8	+	37382603,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.555556
NCI_H460_nuclear_fraction	chr9	111642980	111643025	111643024	+	RAMPAGE_only	4	4	15	0.717158	3.521641	chr9	111642927	111643241	DNA?|DNA?|UCON74	+	chr9	111631359	111654345	DNAJC25|ENST00000463589.5	+	111631359,111642838,111647044,111649452,111653099	111631743,111643094,111647259,111649923,111654345	0.933333
NCI_H460_nuclear_fraction	chr2	159382558	159382567	159382558	-	RAMPAGE_only	3	3	8	0.382485	2.807355	chr2	159382314	159382523	SINE|MIR|MIRb	-	chr2	159318978	159616569	BAZ2B|ENST00000392782.5	-	159318978,159324810,159325652,159332539,159336941,159337566,159347485,159348677,159349006,159349707,159373044,159374690,159382558,159383605,159385154,159386352,159389344,159395768,159397344,159398828,159400598,159404848,159405021,159412334,159428310,159429199,159430862,159432756,159438302,159439008,159446781,159448241,159453612,159478574,159555822,159616241	159320418,159324954,159325918,159332686,159337077,159337772,159347646,159348833,159349280,159350357,159373189,159374753,159382802,159383680,159385369,159386607,159389485,159395834,159397389,159398894,159400664,159404910,159405114,159412545,159428419,159429260,159431156,159433363,159438695,159439212,159446975,159448403,159453801,159478721,159555865,159616569	0.625000
NCI_H460_nuclear_fraction	chr5	167660358	167660368	167660364	-	High_confidence	2	2	7	0.334674	2.584963	chr5	167660180	167660492	SINE|Alu|AluYm1	+	chr5	167653227	167660481	AC008708.2|ENST00000522956.1	-	167653227,167660057	167653927,167660481	0.857143
NCI_H460_nuclear_fraction	chr7	102973724	102973743	102973724	-	High_confidence	2	2	8	0.382485	2.521641	chr7	102973616	102974108	LTR|ERV1|HERVH48-int	+	chr7	102813302	102973361	MSTRG.36985.9	-	102813302,102822039,102854776,102877466,102878330,102883304,102883567,102884213,102913085,102926273,102931880,102963532,102968021,102973149	102813531,102822203,102854860,102877593,102878450,102883467,102883685,102884312,102913215,102926374,102931933,102963665,102968117,102973361	0.750000
NCI_H460_nuclear_fraction	chr4	102431159	102431201	102431179	-	High_confidence	20	22	48	2.294907	4.766939	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.708333
NCI_H460_nuclear_fraction	chr2	55268679	55268704	55268679	-	High_confidence	2	2	8	0.382485	2.750000	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	1.000000
NCI_H460_nuclear_fraction	chr4	122945328	122945347	122945328	+	RAMPAGE_only	6	6	13	0.621537	3.418296	chr4	122939633	122945796	LINE|L1|L1PA4	-	chr4	122923123	123315292	MSTRG.30808.3	+	122923123,122927636,122929039,122933438,122934096,122935713,122936099,122938125,122947232,122979231,123028185,123056386,123057208,123090578,123256015,123313887	122923305,122927758,122929197,122933497,122934738,122935843,122936156,122938249,122947488,122979386,123028395,123056440,123057288,123090705,123256180,123315292	0.769231
NCI_H460_nuclear_fraction	chr6	56621039	56621052	56621039	-	RAMPAGE_only	3	4	9	0.430295	2.750000	chr6	56621009	56621116	SINE|MIR|MIR3	-	chr6	56614575	56642889	MSTRG.34402.23	-	56614575,56617985,56620800,56625156,56627203,56627998,56629249,56630244,56631210,56631882,56632853,56634131,56634461,56634800,56635588,56636556,56639258,56639449,56639695,56639928,56640142,56641946,56642409,56642621	56617418,56620715,56624628,56625264,56627287,56628161,56629443,56630383,56631389,56632040,56633037,56634258,56634616,56634953,56635714,56636652,56639363,56639611,56639773,56640057,56640605,56642101,56642503,56642889	0.888889
NCI_H460_nuclear_fraction	chr6	3054355	3054414	3054381	+	RAMPAGE_only	2	2	10	0.478106	2.721928	chr6	3054386	3054688	LINE|L1|L1MD1	+	chr6	3055848	3057357	AL031963.2|ENST00000433761.2	+	3055848,3056501	3056024,3057357	0.700000
NCI_H460_nuclear_fraction	chr8	80084315	80084348	80084315	-	RAMPAGE_only	2	2	10	0.478106	2.947703	chr8	80084257	80084362	LTR|ERVL-MaLR|MLT1K	+	chr8	80034867	80080831	TPD52|NM_001025252.2	-	80034867,80042619,80051526,80053281,80064477,80080314	80038235,80042668,80051628,80053430,80064593,80080831	0.900000
NCI_H460_nuclear_fraction	chrX	16712889	16712959	16712958	-	High_confidence	15	15	95	4.542003	5.388966	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16587998	16712979	CTPS2|NM_019857.4	-	16587998,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712979	0.884211
NCI_H460_nuclear_fraction	chr8	75278744	75278813	75278744	-	High_confidence	3	3	24	1.147454	4.501629	chr8	75278367	75284402	LINE|L1|L1PA4	+	chr8	75223768	75278497	CASC9|ENST00000521147.1	-	75223768,75278356	75224358,75278497	0.500000
NCI_H460_nuclear_fraction	chr12	39369871	39369894	39369871	-	RAMPAGE_only	4	4	9	0.430295	2.725481	chr12	39369860	39369969	LINE|Penelope|Penelope1_Vert	+	chr12	39293228	39442943	KIF21A|ENST00000636569.1	-	39293228,39301479,39302964,39304820,39307564,39309585,39311416,39315228,39315931,39318072,39319905,39322667,39325838,39326263,39330241,39330745,39331689,39332213,39332590,39332892,39333211,39337095,39340164,39340905,39341504,39342033,39351776,39356831,39357247,39358177,39363097,39366349,39367029,39367882,39369728,39370038,39442926	39294517,39301679,39303135,39304938,39307729,39309766,39311553,39315243,39315970,39318201,39320013,39322882,39325893,39326324,39330262,39330911,39331791,39332408,39332744,39333107,39333280,39337203,39340364,39341094,39341622,39342124,39351980,39356895,39357437,39358373,39363213,39366517,39367164,39368032,39369911,39370261,39442943	0.555556
NCI_H460_nuclear_fraction	chr2	153593287	153593339	153593324	-	High_confidence	9	9	29	1.386506	4.106377	chr2	153592685	153593536	LINE|L1|L1PBa1	+	chr2	153421806	153593288	AC012501.1|ENST00000424322.1	-	153421806,153592859	153421963,153593288	0.758621
NCI_H460_nuclear_fraction	chr7	116724043	116724122	116724121	+	RAMPAGE_only	50	55	379	18.120203	6.916665	chr7	116718497	116724489	LINE|L1|L1PA2	-	chr7	116699084	116763080	MET|ENST00000436117.2	+	116699084,116731667,116739949,116740851,116755354,116757436,116757637,116758458,116763049	116700284,116731859,116740084,116741025,116755515,116757539,116757774,116758620,116763080	0.635884
NCI_H460_nuclear_fraction	chr10	84279967	84279968	84279967	+	High_confidence	70	74	91	4.350761	5.547316	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279990	84288995	LINC00858|ENST00000437892.1	+	84279990,84288223,84288593	84280065,84288420,84288995	0.505495
NCI_H460_nuclear_fraction	chr2	206161369	206161467	206161466	+	High_confidence	18	20	121	5.785078	5.301944	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	0.966942
NCI_H460_nuclear_fraction	chr14	63102077	63102091	63102077	-	High_confidence	19	19	54	2.581770	4.675573	chr14	63101880	63102189	SINE|Alu|AluY	+	chr14	62949817	63102037	KCNH5|ENST00000394964.3	-	62949817,62980871,62987071,63001330,63006365,63016830,63101799	62950559,62981264,62987187,63001459,63006472,63016954,63102037	0.611111
NCI_H460_nuclear_fraction	chr3	197299286	197299317	197299307	-	High_confidence	2	2	10	0.478106	3.169925	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.900000
NCI_H460_nuclear_fraction	chr20	37297344	37297345	37297344	+	High_confidence	7	7	8	0.382485	2.807355	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.875000
NCI_H460_nuclear_fraction	chr6	125920614	125920615	125920614	+	RAMPAGE_only	41	47	51	2.438339	4.973661	chr6	125920573	125920708	SINE|Alu|AluJo	-	chr6	125919304	125931111	NCOA7|ENST00000444128.2	+	125919304,125920942,125922681,125927662,125928635	125919431,125921068,125922834,125927758,125931111	0.745098
NCI_H460_nuclear_fraction	chr12	69778949	69778980	69778975	+	High_confidence	5	5	24	1.147454	3.803509	chr12	69773410	69779441	LINE|L1|L1HS	-	chr12	69778951	69823204	RAB3IP|NM_001024647.3	+	69778951,69784719,69794436,69795140,69800208,69801608,69812777,69812963,69815363	69779181,69784815,69794514,69795344,69800337,69801721,69812877,69813033,69823204	0.500000
NCI_H460_nuclear_fraction	chr9	105299106	105299138	105299121	+	RAMPAGE_only	46	47	118	5.641646	6.075369	chr9	105298796	105299133	LINE|L2|L2b	-	chr9	105294665	105392400	MSTRG.40543.5	+	105294665,105299219,105299742,105309723,105335562,105348357,105356211,105358343,105361190,105362820,105364554,105365482,105366345,105374597,105383122,105385421,105389032,105389188	105294798,105299309,105299937,105309866,105335699,105348451,105356381,105358433,105361330,105363007,105364720,105365639,105366429,105374735,105383359,105385502,105389112,105392400	0.669492
NCI_H460_nuclear_fraction	chr5	104911007	104911008	104911007	-	High_confidence	6	8	8	0.382485	2.500000	chr5	104910764	104911175	LTR|ERVL|LTR16	-	chr5	104383297	104910733	AC099520.1|ENST00000524336.5	-	104383297,104886857,104910661	104383382,104886975,104910733	0.625000
NCI_H460_nuclear_fraction	chr7	116724381	116724382	116724381	+	High_confidence	4	4	7	0.334674	2.521641	chr7	116718497	116724489	LINE|L1|L1PA2	-	chr7	116724145	116755414	MET|ENST00000495962.1	+	116724145,116724771,116731667,116739949,116740851,116755354	116724249,116724847,116731859,116740084,116741025,116755414	0.571429
NCI_H460_nuclear_fraction	chr7	101217578	101217614	101217578	-	High_confidence	16	17	55	2.629581	5.390273	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.981818
NCI_H460_nuclear_fraction	chr11	65433226	65433260	65433226	+	RAMPAGE_only	2	2	9	0.430295	2.725481	chr11	65432693	65433229	LINE|L1|L1PB3	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
NCI_H460_nuclear_fraction	chr18	199293	199305	199304	+	RAMPAGE_only	3	3	7	0.334674	2.807355	chr18	199329	199945	DNA|TcMar-Tigger|Tigger17a	+	chr18	196538	211268	USP14|ENST00000578786.1	+	196538,197615,198046,199201,202879,203097,204563,209970,210385,211132	196767,197696,198132,199316,202945,203190,204692,210031,210493,211268	0.571429
NCI_H460_nuclear_fraction	chr1	237471099	237471167	237471146	+	RAMPAGE_only	126	127	405	19.363278	7.439338	chr1	237470691	237471420	LTR|ERV1|LTR9A1	-	chr1	237270496	237832644	RYR2|ENST00000360064.7	+	237270496,237330877,237355964,237369518,237374716,237377322,237387280,237388086,237417048,237423091,237441318,237445400,237454390,237456599,237469091,237491805,237492953,237496510,237500710,237503288,237506709,237511687,237530426,237548430,237550543,237566566,237569144,237589792,237590639,237591738,237593475,237595497,237602024,237610761,237614038,237617285,237623764,237625660,237627806,237631426,237633577,237634888,237638356,237639014,237640896,237643326,237648443,237649876,237651410,237654273,237655820,237657943,237659984,237660809,237666511,237667882,237674095,237674730,237678047,237680455,237687454,237698964,237700228,237701977,237705212,237706948,237708857,237709479,237711744,237717197,237718461,237723127,237726272,237727086,237730259,237732045,237733704,237742295,237756287,237757696,237759775,237760954,237770806,237772011,237773519,237778665,237781564,237783674,237784987,237787953,237791428,237792104,237793866,237795288,237798036,237801855,237806136,237808900,237819035,237828380,237830529,237831513,237832551	237270616,237330982,237355985,237369608,237374795,237377435,237387380,237388183,237417123,237423248,237441483,237445522,237454574,237456735,237469187,237491924,237493087,237496752,237500903,237503505,237506814,237511791,237530510,237548590,237550691,237566775,237569319,237590001,237590992,237591853,237593636,237595657,237602111,237610988,237614843,237617486,237623870,237625804,237628080,237631541,237633710,237634992,237638492,237639201,237641002,237643447,237648613,237650097,237651501,237654414,237655984,237658022,237660074,237660947,237666589,237667958,237674219,237674846,237678112,237680577,237687504,237699025,237700467,237702059,237705343,237707269,237709098,237709567,237711837,237717368,237718521,237723262,237726308,237727199,237730356,237732149,237733756,237742349,237756387,237757776,237759852,237761028,237770887,237772100,237773648,237778770,237781646,237784984,237785006,237788135,237791515,237792323,237793997,237795331,237798170,237801916,237806283,237809035,237819192,237828445,237830630,237831565,237832644	0.674074
NCI_H460_nuclear_fraction	chrX	81114875	81115182	81114971	-	RAMPAGE_only	30	31	316	15.108138	6.552785	chrX	81114672	81115052	LINE|L1|HAL1	-	chrX	81113671	81121098	MSTRG.42037.1	-	81113671,81120235	81114770,81121098	0.601266
NCI_H460_nuclear_fraction	chr6	125930143	125930203	125930175	+	RAMPAGE_only	5	7	32	1.529938	3.336810	chr6	125930077	125930359	SINE|Alu|AluSx1	+	chr6	125919304	125931111	NCOA7|ENST00000444128.2	+	125919304,125920942,125922681,125927662,125928635	125919431,125921068,125922834,125927758,125931111	0.937500
NCI_H460_nuclear_fraction	chr1	150729944	150729968	150729944	-	High_confidence	9	9	58	2.773013	5.521641	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150646229	150729940	MSTRG.2432.2	-	150646229,150661813,150663631,150694655,150697186,150698853,150703309,150704117,150706552,150708255,150708893,150711544,150711832,150714084,150714614,150717137,150719472,150729148,150729573	150648748,150661928,150663763,150694850,150698734,150700183,150703393,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150714678,150717282,150719541,150729225,150729940	0.844828
NCI_H460_nuclear_fraction	chr12	52221386	52221395	52221394	+	RAMPAGE_only	3	5	10	0.478106	3.121928	chr12	52221238	52221485	SINE|MIR|MIRb	-	chr12	52210929	52223813	LINC00592|NR_027358.1	+	52210929,52212043,52212598,52221976,52223445	52211020,52212156,52213027,52222028,52223813	1.000000
NCI_H460_nuclear_fraction	chr8	128588613	128588694	128588680	-	High_confidence	10	13	87	4.159519	5.652208	chr8	128588445	128588770	LINE|L2|L2c	+	chr8	128584491	128588892	MSTRG.39220.1	-	128584491	128588892	0.988506
NCI_H460_nuclear_fraction	chr10	65570509	65570536	65570521	+	High_confidence	309	556	1578	75.445069	7.205741	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.538023
NCI_H460_nuclear_fraction	chr5	139364707	139364708	139364707	+	RAMPAGE_only	4	4	6	0.286863	2.584963	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.666667
NCI_H460_nuclear_fraction	chr2	190607242	190607274	190607267	-	RAMPAGE_only	3	3	12	0.573727	3.095795	chr2	190607108	190607299	LINE|L2|L2c	-	chr2	190506892	190534742	NEMP2|NR_136298.1	-	190506892,190510360,190514452,190516269,190517519,190518735,190518951,190525262,190534558	190509312,190510537,190514678,190516338,190517613,190518808,190519183,190525378,190534742	0.500000
NCI_H460_nuclear_fraction	chr20	648111	648154	648142	-	RAMPAGE_only	2	4	12	0.573727	2.617492	chr20	648117	648374	LTR|ERVL-MaLR|MLT1J	+	chr20	646614	653370	SRXN1|NM_080725.2	-	646614,652975	648917,653370	1.000000
NCI_H460_nuclear_fraction	chr5	91311815	91311880	91311823	-	High_confidence	15	16	43	2.055854	4.768947	chr5	91311782	91311955	SINE|5S-Deu-L2|AmnSINE1	+	chr5	91307678	91312375	LUCAT1|ENST00000650047.1	-	91307678,91310743,91312294	91308388,91311032,91312375	0.837209
NCI_H460_nuclear_fraction	chr15	21273509	21273513	21273512	-	RAMPAGE_only	10	10	18	0.860590	3.263933	chr15	21273139	21273669	LTR|ERVL|LTR33A_	+	chr15	21265085	21275623	MSTRG.12442.6	-	21265085,21270768,21273132,21275555	21268484,21270924,21273259,21275623	0.666667
NCI_H460_nuclear_fraction	chr11	123060147	123060256	123060174	-	High_confidence	20	20	181	8.653712	5.332376	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.701657
NCI_H460_nuclear_fraction	chr2	29130883	29130936	29130935	+	RAMPAGE_only	13	13	51	2.438339	4.943773	chr2	29130914	29131102	SINE|MIR|MIRb	+	chr2	29121513	29132650	CLIP4|ENST00000491701.1	+	29121513,29131257	29121521,29132650	0.647059
NCI_H460_nuclear_fraction	chr4	188373017	188373022	188373017	+	RAMPAGE_only	6	6	10	0.478106	2.947703	chr4	188373006	188373273	LINE|L2|L2a	-	chr4	188400735	188485865	LINC01060|ENST00000512839.5	+	188400735,188436703,188476697,188477637,188485778	188400833,188436900,188476756,188477912,188485865	0.500000
NCI_H460_nuclear_fraction	chr15	66354122	66354123	66354122	-	RAMPAGE_only	9	10	10	0.478106	2.947703	chr15	66354028	66355027	LINE|L2|L2a	+	chr15	66336383	66356685	TIPIN|ENST00000566524.5	-	66336383,66341149,66349059,66349314,66352128,66352814,66356638	66337181,66341356,66349123,66349437,66352207,66352955,66356685	0.900000
NCI_H460_nuclear_fraction	chr3	57983753	57983764	57983763	-	High_confidence	3	3	7	0.334674	2.807355	chr3	57983407	57983765	LTR|ERVL|LTR16C	+	chr3	57974919	57983122	MSTRG.28214.1	-	57974919,57982960	57975075,57983122	0.857143
NCI_H460_nuclear_fraction	chr2	153592970	153593009	153592981	-	RAMPAGE_only	48	49	104	4.972299	5.979703	chr2	153592685	153593536	LINE|L1|L1PBa1	+	chr2	153420676	153421957	AC012501.2|ENST00000437634.1	-	153420676	153421957	0.500000
NCI_H460_nuclear_fraction	chr16	65231455	65231733	65231455	+	High_confidence	22	22	351	16.781508	6.847572	chr16	65230856	65231518	LTR|ERV1|HERVH-int	-	chr16	65231914	65255759	MSTRG.15430.4	+	65231914,65251723,65254603	65233403,65251869,65255759	0.754986
NCI_H460_nuclear_fraction	chr2	142811828	142811907	142811906	+	High_confidence	17	22	184	8.797144	5.365008	chr2	142806275	142812293	LINE|L1|L1PA3	-	chr2	142812128	143053999	MSTRG.23438.1	+	142812128,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142812388,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143053999	0.951087
NCI_H460_nuclear_fraction	chr18	7946875	7946898	7946878	+	High_confidence	164	164	531	25.387409	6.384647	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.740113
NCI_H460_nuclear_fraction	chr3	149809516	149809546	149809535	+	RAMPAGE_only	10	10	32	1.529938	3.472906	chr3	149809289	149809585	SINE|Alu|AluYm1	+	chr3	149812687	149962139	RNF13|NM_183381.2	+	149812687,149846010,149852515,149872028,149895472,149902071,149911977,149921133,149960055,149960739	149813353,149846140,149852596,149872154,149895560,149902162,149912083,149921227,149960136,149962139	0.625000
NCI_H460_nuclear_fraction	chr7	22725955	22725956	22725955	+	High_confidence	5	5	7	0.334674	2.584963	chr7	22725923	22726198	LTR|Gypsy?|LTR88b	+	chr7	22725883	22732002	IL6|ENST00000404625.5	+	22725883,22727178,22727443,22728692,22729513,22731405	22726258,22727281,22727634,22728806,22729660,22732002	0.571429
NCI_H460_nuclear_fraction	chr2	190912695	190912714	190912695	+	RAMPAGE_only	3	3	7	0.334674	2.521641	chr2	190912567	190912723	SINE|MIR|MIR3	-	chr2	190895651	190924592	MSTRG.23972.6	+	190895651,190900563,190901946,190905003,190910262,190921023,190921144,190923916,190924542	190895725,190900693,190902026,190905167,190920248,190921056,190921203,190923983,190924592	1.000000
NCI_H460_nuclear_fraction	chr5	130337949	130338024	130337952	+	High_confidence	92	110	187	8.940575	6.707072	chr5	130337852	130338318	LTR|ERVL|MLT2D	-	chr5	130337411	130379823	MSTRG.32539.4	+	130337411,130362690,130368142,130377175	130338082,130362834,130368323,130379823	0.513369
NCI_H460_nuclear_fraction	chr18	66566801	66566838	66566801	-	RAMPAGE_only	5	5	13	0.621537	3.180833	chr18	66566244	66566942	LINE|L2|L2	+	chr18	66532338	66572171	CDH19|ENST00000454642.3	-	66532338,66534985,66543970,66544718,66551093,66554404,66568415,66572009	66532712,66535107,66544224,66544903,66551258,66554524,66568710,66572171	0.692308
NCI_H460_nuclear_fraction	chr4	158167223	158167229	158167228	-	RAMPAGE_only	13	13	33	1.577749	4.365014	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158124579	158172566	FAM198B|NM_016613.6	-	158124579,158130785,158155610,158170465,158172338	158127614,158131012,158155825,158171599,158172566	0.696970
NCI_H460_nuclear_fraction	chr9	72247887	72247897	72247889	+	RAMPAGE_only	2	3	8	0.382485	2.521641	chr9	72247764	72247906	DNA|TcMar-Tigger|MamRep137	+	chr9	72227996	72252223	MSTRG.40130.13	+	72227996,72231113,72241151,72247405,72248271	72228040,72231181,72245278,72247433,72252223	0.875000
NCI_H460_nuclear_fraction	chr20	50172503	50172595	50172589	+	High_confidence	18	27	114	5.450404	6.173252	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172589	50176671	LINC01273|ENST00000411453.2	+	50172589,50172922,50176280	50172788,50173017,50176671	0.500000
NCI_H460_nuclear_fraction	chr3	9986881	9986905	9986898	+	High_confidence	30	33	86	4.111708	5.880828	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986897	10006657	MSTRG.27428.3	+	9986897,9988711,10002716	9988007,9988747,10006657	0.848837
NCI_H460_nuclear_fraction	chr2	227534916	227534941	227534940	+	RAMPAGE_only	2	3	9	0.430295	2.500000	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.888889
NCI_H460_nuclear_fraction	chr7	76109081	76109092	76109091	-	High_confidence	12	16	45	2.151475	4.879526	chr7	76108929	76109272	LTR|ERV1|MER61A	-	chr7	76090430	76108779	GTF2IP7|ENST00000434037.1	-	76090430,76093296,76099439,76099897,76108230,76108434	76092166,76093401,76099514,76099956,76108309,76108779	0.577778
NCI_H460_nuclear_fraction	chr3	9391825	9391828	9391827	-	RAMPAGE_only	14	17	23	1.099643	4.055958	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9386637	9397496	MSTRG.27377.24	-	9386637,9390289,9397423	9388127,9391826,9397496	0.956522
NCI_H460_nuclear_fraction	chr3	37058844	37058884	37058883	-	RAMPAGE_only	3	3	14	0.669348	3.026987	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.857143
NCI_H460_nuclear_fraction	chr11	57641273	57641274	57641273	+	High_confidence	9	9	10	0.478106	2.947703	chr11	57641249	57641313	LINE|RTE-BovB|MamRTE1	-	chr11	57641552	57642666	MSTRG.6552.1	+	57641552	57642666	0.700000
NCI_H460_nuclear_fraction	chr2	71417086	71417126	71417125	+	RAMPAGE_only	3	3	9	0.430295	3.169925	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.888889
NCI_H460_nuclear_fraction	chr8	128406792	128406838	128406792	-	RAMPAGE_only	19	19	122	5.832889	5.597048	chr8	128406584	128406783	LTR|ERVL|LTR79	-	chr8	128405268	128427916	LINC00824|ENST00000520206.5	-	128405268,128406775,128414213,128421742,128423500,128427657	128406633,128406846,128414408,128421814,128423593,128427916	1.000000
NCI_H460_nuclear_fraction	chr4	173369526	173369535	173369526	-	High_confidence	8	8	16	0.764969	3.625000	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363779	173370446	AC097534.2|ENST00000609153.1	-	173363779,173369433,173370291	173364198,173369610,173370446	0.812500
NCI_H460_nuclear_fraction	chr6	16709429	16709451	16709429	-	RAMPAGE_only	2	2	8	0.382485	2.521641	chr6	16709426	16709545	LINE|L1|L1MD2	+	chr6	16305674	16704847	MSTRG.33592.4	-	16305674,16326393,16485971,16522626,16585779,16657775,16704761	16306859,16328470,16486109,16522688,16585907,16657901,16704847	0.750000
NCI_H460_nuclear_fraction	chr7	134527596	134527597	134527596	+	High_confidence	4069	4227	5278	252.344152	7.725572	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.943918
NCI_H460_nuclear_fraction	chr5	171400152	171400180	171400152	+	RAMPAGE_only	17	28	147	7.028153	6.225696	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171387828	171410884	NPM1|ENST00000351986.10	+	171387828,171390050,171391304,171391705,171392709,171392913,171400152,171405301,171407699,171410526	171388006,171390130,171391424,171391799,171392816,171392978,171400210,171405403,171407774,171410884	0.714286
NCI_H460_nuclear_fraction	chr7	23722775	23722809	23722775	+	High_confidence	13	13	33	1.577749	4.476064	chr7	23721816	23723200	LINE|L1|L1P2	-	chr7	23722108	23832513	STK31|ENST00000405627.7	+	23722108,23722319,23725877,23727240,23729090,23735537,23736903,23752716,23754314,23762800,23768994,23769639,23771004,23772146,23781418,23783582,23785477,23786507,23786837,23787979,23790823,23815143,23832135	23722187,23722480,23726411,23727315,23729249,23735896,23737078,23752832,23754474,23762923,23769174,23769756,23771124,23772278,23781520,23783663,23785603,23786633,23786924,23788129,23790946,23815212,23832513	0.666667
NCI_H460_nuclear_fraction	chr7	99471746	99471779	99471778	-	RAMPAGE_only	8	8	32	1.529938	4.077820	chr7	99471609	99471877	SINE|Alu|AluSx1	+	chr7	99458194	99466331	ATP5MF|ENST00000292475.7	-	99458194,99459146,99460085,99466110	99458355,99459263,99460193,99466331	0.718750
NCI_H460_nuclear_fraction	chr2	230342052	230342141	230342140	+	High_confidence	29	29	193	9.227439	6.538718	chr2	230337069	230342513	LINE|L1|L1HS	-	chr2	230342069	230372744	SP140L|ENST00000458341.1	+	230342069,230357804,230358963,230361613,230370907,230371597	230342173,230357967,230359132,230361697,230370967,230372744	0.544041
NCI_H460_nuclear_fraction	chr14	37219581	37219596	37219581	+	High_confidence	5	5	9	0.430295	2.947703	chr14	37219356	37219666	SINE|Alu|AluJo	-	chr14	37219551	37546053	MIPOL1|ENST00000545536.5	+	37219551,37247102,37247828,37266950,37268657,37270419,37285317,37308055,37308348,37369516,37422854,37499907,37523472,37545664	37219691,37247240,37247907,37267169,37268793,37270525,37285447,37308089,37308519,37369624,37422949,37500138,37523569,37546053	0.777778
NCI_H460_nuclear_fraction	chr6	162056854	162056900	162056895	-	High_confidence	157	163	1169	55.890548	7.397161	chr6	162056564	162057090	LTR|ERVL|MER68	+	chr6	161951889	162056641	MSTRG.35387.10	-	161951889,161973301,162054090,162056449	161951914,161973417,162054174,162056641	0.603080
NCI_H460_nuclear_fraction	chr16	57458032	57458062	57458047	+	High_confidence	3	3	9	0.430295	2.500000	chr16	57457966	57458083	LTR|ERVL-MaLR|MLT1O	-	chr16	57458124	57461270	COQ9|ENST00000569980.1	+	57458124,57459564,57460050,57460588	57458350,57459720,57460104,57461270	0.555556
NCI_H460_nuclear_fraction	chr2	75239193	75239280	75239277	+	High_confidence	96	173	505	24.144334	6.780399	chr2	75238954	75239942	DNA|TcMar-Tigger|Tigger6a	+	chr2	75239318	75279670	MSTRG.22706.1	+	75239318,75276509,75278077	75239696,75276599,75279670	0.823762
NCI_H460_nuclear_fraction	chr4	122917834	122917912	122917834	-	RAMPAGE_only	46	47	110	5.259162	5.495826	chr4	122917758	122918008	LINE|L2|L2b	+	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	0.945455
NCI_H460_nuclear_fraction	chr19	5680191	5680206	5680205	-	High_confidence	5	6	10	0.478106	2.721928	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678831	5680194	C19orf70|ENST00000590389.5	-	5678831,5679344,5679585,5680054	5679230,5679396,5679763,5680194	0.800000
NCI_H460_nuclear_fraction	chrY	19076158	19076181	19076158	+	High_confidence	11	13	34	1.625559	4.558051	chrY	19076206	19076517	SINE|Alu|AluY	+	chrY	19076450	19076651	MSTRG.42773.1	+	19076450	19076651	0.558824
NCI_H460_nuclear_fraction	chr12	8681599	8681622	8681599	+	High_confidence	13	16	21	1.004022	4.121928	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681611	8783095	MSTRG.8186.3	+	8681611,8713810,8744755,8749861,8751956,8753889,8773320,8780577,8782911	8681818,8714041,8744803,8750092,8752043,8754093,8777802,8780739,8783095	0.761905
NCI_H460_nuclear_fraction	chr7	106285426	106285446	106285426	-	High_confidence	6	6	12	0.573727	2.594907	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106277055	106285612	NAMPT|ENST00000417537.1	-	106277055,106284827,106285540	106277179,106284931,106285612	0.750000
NCI_H460_nuclear_fraction	chr12	53464833	53464852	53464833	+	RAMPAGE_only	3	3	8	0.382485	2.500000	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479614	MSTRG.8876.42	+	53462513,53464759,53465931,53467220,53468779,53471637,53479405	53462567,53464852,53465973,53467843,53468832,53471807,53479614	0.625000
NCI_H460_nuclear_fraction	chr8	39017018	39017070	39017018	+	High_confidence	2	2	12	0.573727	2.845351	chr8	39016988	39017120	SINE|MIR|MIRb	-	chr8	39017035	39021713	ADAM9|ENST00000481058.1	+	39017035,39018852,39021642	39017414,39018918,39021713	0.750000
NCI_H460_nuclear_fraction	chr15	53541006	53541048	53541016	-	High_confidence	34	40	160	7.649690	5.675103	chr15	53540633	53546677	LINE|L1|L1PA2	+	chr15	53513741	53541080	WDR72|ENST00000614174.4	-	53513741,53523217,53540974	53517754,53523322,53541080	0.806250
NCI_H460_nuclear_fraction	chr7	12497207	12497211	12497210	+	High_confidence	6	6	16	0.764969	3.750000	chr7	12497211	12500000	LINE|L1|L1HS	+	chr7	12496428	12541135	LOC102725191|NR_136261.1	+	12496428,12525819,12528901,12531012,12538309,12540919	12496639,12525904,12529044,12531092,12538456,12541135	0.500000
NCI_H460_nuclear_fraction	chr16	72627661	72627766	72627719	-	RAMPAGE_only	16	18	137	6.550047	6.242655	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.598540
NCI_H460_nuclear_fraction	chr15	74354435	74354470	74354435	+	High_confidence	48	52	84	4.016087	5.325844	chr15	74354143	74354537	LTR|ERV1|LTR7	+	chr15	74354455	74364620	PPIAP46|ENST00000562009.1	+	74354455,74361513	74354685,74364620	0.761905
NCI_H460_nuclear_fraction	chr1	188871576	188871685	188871625	-	RAMPAGE_only	3	3	29	1.386506	3.531941	chr1	188870784	188871898	DNA|TcMar-Tigger|Tigger2	+	chr1	188869476	188880473	MSTRG.3167.5	-	188869476,188877521	188877142,188880473	0.931034
NCI_H460_nuclear_fraction	chr13	64076008	64076047	64076043	-	High_confidence	19	20	171	8.175606	5.272326	chr13	64075759	64076092	LTR|ERV1|MER52A	-	chr13	63851196	64076044	LINC00355|ENST00000650541.1	-	63851196,63853684,63990095,64002384,64003347,64034346,64075241	63851658,63853759,63990200,64002409,64003465,64034537,64076044	0.941520
NCI_H460_nuclear_fraction	chr1	152049860	152049864	152049860	-	RAMPAGE_only	5	6	17	0.812780	3.616875	chr1	152049394	152049912	DNA|PiggyBac|Looper	-	chr1	152032505	152047907	S100A11|ENST00000478109.1	-	152032505,152033647,152047821	152032823,152033800,152047907	0.764706
NCI_H460_nuclear_fraction	chr1	236899030	236899051	236899030	+	RAMPAGE_only	3	3	14	0.669348	3.521641	chr1	236899039	236900641	LINE|L1|L1ME3F	+	chr1	236894340	236900409	MTR|ENST00000470570.1	+	236894340,236897005,236897557	236895550,236897118,236900409	1.000000
NCI_H460_nuclear_fraction	chr1	39026177	39026199	39026190	+	High_confidence	3	3	15	0.717158	3.189898	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
NCI_H460_nuclear_fraction	chrX	97310588	97310613	97310612	+	RAMPAGE_only	10	17	30	1.434317	4.164735	chrX	97310220	97310731	LINE|L2|L2a	-	chrX	96685016	97469765	DIAPH2|ENST00000373054.5	+	96685016,96735757,96738585,96758153,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348117,97383908,97429649,97469693	96685190,96735790,96738762,96758258,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247841,97348280,97384044,97429745,97469765	1.000000
NCI_H460_nuclear_fraction	chr2	230342356	230342448	230342405	+	High_confidence	35	36	233	11.139861	6.982256	chr2	230337069	230342513	LINE|L1|L1HS	-	chr2	230342385	230403730	MSTRG.24510.6	+	230342385,230357804,230358963,230361613,230370907,230371597,230383509,230385223,230388558,230389918,230392086,230393413,230396756,230400126,230401663,230402797	230342622,230357967,230359132,230361697,230370967,230371651,230383575,230385304,230388633,230390023,230392229,230393461,230396798,230401443,230401807,230403730	0.811159
NCI_H460_nuclear_fraction	chr2	119685655	119685656	119685655	+	RAMPAGE_only	9	9	9	0.430295	2.641604	chr2	119685548	119685786	SINE|MIR|MIR	-	chr2	119679202	119690447	MSTRG.23242.6	+	119679202,119685657,119689233,119690273	119681123,119688975,119690019,119690447	1.000000
NCI_H460_nuclear_fraction	chr17	51153837	51153853	51153852	+	High_confidence	7	7	13	0.621537	3.392747	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51154043	51155759	NME1|ENST00000456492.1	+	51154043,51155650	51154444,51155759	0.769231
NCI_H460_nuclear_fraction	chr1	188887855	188887910	188887909	-	High_confidence	8	9	33	1.577749	4.750000	chr1	188887879	188888422	LINE|L1|L1MA8	+	chr1	188869476	188887434	AL691515.2|ENST00000414765.1	-	188869476,188887240	188869748,188887434	0.545455
NCI_H460_nuclear_fraction	chr13	99496269	99496305	99496304	-	High_confidence	3	3	7	0.334674	2.807355	chr13	99496164	99496489	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.857143
NCI_H460_nuclear_fraction	chr7	94061493	94061499	94061498	+	High_confidence	6	6	11	0.525916	3.121928	chr7	94061392	94061581	SINE|MIR|MIRc	-	chr7	94061140	94066661	AC003092.1|ENST00000438538.1	+	94061140,94061455,94061768,94064425,94066366	94061270,94061625,94061864,94064477,94066661	0.545455
NCI_H460_nuclear_fraction	chr5	112862377	112862412	112862411	+	High_confidence	3	3	9	0.430295	2.725481	chr5	112862040	112862465	LTR|ERV1|MER51A	-	chr5	112862361	112867724	SRP19|ENST00000506987.1	+	112862361,112864456,112864620,112867403	112862583,112864528,112864732,112867724	1.000000
NCI_H460_nuclear_fraction	chr9	20732423	20732477	20732428	+	RAMPAGE_only	15	19	60	2.868634	5.416376	chr9	20732128	20733009	LINE|L2|L2b	-	chr9	20726350	20770133	FOCAD|ENST00000604103.1	+	20726350,20740235,20758089,20764873,20770031	20726432,20740340,20758191,20765073,20770133	0.616667
NCI_H460_nuclear_fraction	chr14	102235451	102235481	102235458	-	High_confidence	21	22	83	3.968277	5.510699	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.759036
NCI_H460_nuclear_fraction	chr6	166162179	166162261	166162179	-	RAMPAGE_only	3	5	46	2.199286	4.822156	chr6	166162059	166162193	DNA|hAT-Charlie|MER5B	-	chr6	166158414	166167877	TBXT|ENST00000366876.6	-	166158414,166160836,166162446,166164604,166164799,166165705,166166591,166167385	166158588,166160966,166162623,166164666,166164861,166165840,166166856,166167877	0.608696
NCI_H460_nuclear_fraction	chr1	156815425	156815433	156815425	-	High_confidence	7	8	27	1.290885	3.806382	chr1	156815315	156815398	LINE|CR1|L3b	-	chr1	156809660	156815411	SH2D2A|ENST00000486350.1	-	156809660,156813847,156814204,156815036	156809807,156814016,156814294,156815411	0.777778
NCI_H460_nuclear_fraction	chr4	141333516	141333576	141333575	+	RAMPAGE_only	11	13	62	2.964255	4.250392	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141636595	141733987	IL15|NM_172175.2	+	141636595,141656185,141688821,141719377,141720468,141721058,141721923,141727939,141729846,141732737	141636748,141656307,141689035,141719476,141720566,141721177,141722008,141727984,141729984,141733987	0.564516
NCI_H460_nuclear_fraction	chr3	57983623	57983629	57983623	-	High_confidence	5	5	10	0.478106	3.321928	chr3	57983407	57983765	LTR|ERVL|LTR16C	+	chr3	57974919	57983122	MSTRG.28214.1	-	57974919,57982960	57975075,57983122	0.900000
NCI_H460_nuclear_fraction	chr11	12726033	12726041	12726040	+	RAMPAGE_only	10	10	17	0.812780	2.702820	chr11	12725998	12726265	LINE|L2|L2c	-	chr11	12764232	12944483	MSTRG.6156.6	+	12764232,12862249,12864685,12879707,12881004,12881895,12883000,12901939,12924911,12930173,12937108	12764434,12862314,12864900,12879842,12881051,12881957,12883125,12902113,12925052,12930326,12944483	0.941176
NCI_H460_nuclear_fraction	chr18	58590966	58590983	58590982	-	RAMPAGE_only	3	3	11	0.525916	3.277613	chr18	58590847	58591208	LTR|ERVL|LTR33A_	+	chr18	58577943	58580169	ALPK2|ENST00000590662.1	-	58577943	58580169	0.545455
NCI_H460_nuclear_fraction	chr4	138249321	138249360	138249359	-	High_confidence	17	48	126	6.024131	4.980416	chr4	138249275	138249440	LTR|ERVL|HERV16-int	+	chr4	138248589	138249166	MSTRG.30860.1	-	138248589	138249166	0.801587
NCI_H460_nuclear_fraction	chr17	83049140	83049169	83049168	-	High_confidence	21	21	55	2.629581	5.158366	chr17	83049003	83049282	SINE|Alu|AluY	+	chr17	82943790	83049166	B3GNTL1|ENST00000576599.5	-	82943790,82946878,82956694,82957180,82957358,82961056,82965650,83005114,83005574,83014453,83035034,83048470,83048668	82944049,82946983,82956769,82957249,82957494,82961181,82965746,83005210,83005671,83014519,83035099,83048570,83049166	0.963636
NCI_H460_nuclear_fraction	chr14	100569561	100569605	100569561	-	High_confidence	22	29	83	3.968277	5.412815	chr14	100569527	100569624	LINE|L2|L2b	+	chr14	100538887	100569558	BEGAIN|ENST00000556188.5	-	100538887,100540495,100543857,100544999,100546500,100567910,100569426	100539315,100540579,100543965,100545066,100546662,100567939,100569558	0.759036
NCI_H460_nuclear_fraction	chr2	201115959	201115991	201115973	+	High_confidence	3	3	9	0.430295	2.500000	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.888889
NCI_H460_nuclear_fraction	chr10	115435385	115435421	115435420	+	RAMPAGE_only	83	88	447	21.371322	7.052584	chr10	115435292	115435573	LTR|ERVL-MaLR|MSTD	+	chr10	115467173	115597982	ATRNL1|ENST00000424738.1	+	115467173,115469171,115519262,115549457,115597592	115467252,115469329,115519324,115549536,115597982	0.606264
NCI_H460_nuclear_fraction	chr7	102973265	102973291	102973265	-	High_confidence	301	322	958	45.802519	7.366114	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102883571	102973219	FBXL13|ENST00000477915.5	-	102883571,102884213,102913085,102926273,102963532,102968021,102973149	102883685,102884312,102913215,102926374,102963665,102968117,102973219	0.604384
NCI_H460_nuclear_fraction	chr15	41365740	41365765	41365764	+	High_confidence	4	6	23	1.099643	2.914016	chr15	41365708	41366019	SINE|Alu|AluSc8	-	chr15	41365746	41380747	MSTRG.12885.25	+	41365746,41371526,41375711,41377195,41380092	41365863,41371684,41375828,41377304,41380747	1.000000
NCI_H460_nuclear_fraction	chr16	1963518	1963526	1963525	-	High_confidence	4	4	10	0.478106	2.921928	chr16	1963335	1963598	SINE|Alu|AluSx3	+	chr16	1962060	1963256	RPS2|ENST00000526586.6	-	1962060,1962735,1963148	1962656,1962909,1963256	0.900000
NCI_H460_nuclear_fraction	chr6	149896125	149896148	149896125	-	High_confidence	4	4	16	0.764969	3.373557	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149883374	149896059	RAET1E|NM_001243328.1	-	149883374,149889347,149889884,149890816,149895845	149884504,149889623,149890145,149891034,149896059	0.625000
NCI_H460_nuclear_fraction	chr2	153871921	153871947	153871921	+	High_confidence	22	24	62	2.964255	5.554924	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.661290
NCI_H460_nuclear_fraction	chr1	244844940	244845083	244844989	-	RAMPAGE_only	8	9	84	4.016087	4.644172	chr1	244844922	244845181	DNA|TcMar-Tigger|MER2	-	chr1	244843767	244848889	HNRNPU|ENST00000640657.1	-	244843767,244846485	244845686,244848889	0.976190
NCI_H460_nuclear_fraction	chr2	207566547	207566584	207566583	+	RAMPAGE_only	9	11	28	1.338696	4.307355	chr2	207566631	207566825	SINE|MIR|MIR	+	chr2	207560313	207596949	CREB1|ENST00000418081.5	+	207560313,207561118,207567462,207570178,207575271,207576630,207577109,207577504,207596913	207560372,207561160,207567563,207570321,207575454,207576693,207577224,207577655,207596949	0.678571
NCI_H460_nuclear_fraction	chr19	48868613	48868666	48868630	-	High_confidence	55	55	325	15.538433	6.863381	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868632	PLEKHA4|ENST00000263265.10	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868632	0.981538
NCI_H460_nuclear_fraction	chr16	4015655	4015669	4015655	-	High_confidence	3	3	10	0.478106	2.725481	chr16	4015652	4015685	SINE|MIR|MIR	+	chr16	3983391	4015682	ADCY9|ENST00000575550.5	-	3983391,3988993,3993405,4007367,4015561	3983440,3989096,3993510,4007558,4015682	0.700000
NCI_H460_nuclear_fraction	chr2	201403278	201403307	201403306	-	High_confidence	5	6	11	0.525916	2.921928	chr2	201403225	201403369	SINE|MIR|MIR3	-	chr2	201377206	201404128	MSTRG.24112.2	-	201377206,201386217,201387702,201389299,201389800,201392908,201394797,201395313,201397501,201398144,201399376,201401017,201402672	201384216,201386484,201388001,201389503,201389880,201393046,201394872,201395444,201397580,201398354,201399493,201401094,201404128	0.636364
NCI_H460_nuclear_fraction	chr21	8850072	8850073	8850072	+	RAMPAGE_only	4	4	7	0.334674	2.521641	chr21	8850073	8850241	SINE|MIR|MIRb	+	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	1.000000
NCI_H460_nuclear_fraction	chr8	8244546	8244588	8244546	-	RAMPAGE_only	7	7	40	1.912423	4.383831	chr8	8244455	8244522	LTR|ERV1|MER57A-int	-	chr8	8238173	8241411	ALG1L13P|ENST00000519320.1	-	8238173,8239492,8240205,8240437,8241295	8238338,8239576,8240313,8240548,8241411	0.725000
NCI_H460_nuclear_fraction	chr11	76823516	76823533	76823520	-	RAMPAGE_only	8	8	27	1.290885	3.613337	chr11	76823448	76823540	SINE|Alu|AluJb	-	chr11	76819736	76820802	MSTRG.7213.1	-	76819736	76820802	0.777778
NCI_H460_nuclear_fraction	chr19	51350358	51350364	51350363	-	RAMPAGE_only	4	4	8	0.382485	2.521641	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.875000
NCI_H460_nuclear_fraction	chr6	109250759	109250796	109250785	+	High_confidence	61	67	196	9.370870	5.754345	chr6	109245218	109251251	LINE|L1|L1PA2	-	chr6	109250734	109282853	MSTRG.34831.5	+	109250734,109254447,109255370,109257545,109261888,109264800,109267807,109270038,109282566	109250991,109254648,109255492,109257774,109262091,109264956,109267901,109270176,109282853	0.596939
NCI_H460_nuclear_fraction	chr8	99892034	99892057	99892056	-	RAMPAGE_only	24	24	63	3.012065	4.475947	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.984127
NCI_H460_nuclear_fraction	chrX	23884028	23884035	23884034	-	High_confidence	3	5	11	0.525916	3.095795	chrX	23883973	23884117	LINE|L2|L2c	-	chrX	23856355	23884019	APOO|ENST00000633372.1	-	23856355,23858641,23868592,23874402,23878914,23880844,23883358	23856382,23858733,23868688,23874457,23879034,23880952,23884019	0.909091
NCI_H460_nuclear_fraction	chr1	153967484	153967512	153967497	+	High_confidence	17	19	116	5.546025	5.662777	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153974131	MSTRG.2544.1	+	153967533,153968521,153969333,153972743,153972971,153973194,153973379,153973619,153973871	153967884,153969176,153969455,153972836,153973078,153973263,153973464,153973716,153974131	0.862069
NCI_H460_nuclear_fraction	chr1	42959478	42959486	42959478	+	High_confidence	7	8	15	0.717158	3.773557	chr1	42959490	42959595	LINE|L2|L2c	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.533333
NCI_H460_nuclear_fraction	chr17	28719697	28719712	28719711	+	High_confidence	9	9	17	0.812780	3.500000	chr17	28719632	28719760	SINE|Alu|AluYh3	+	chr17	28719981	28724356	RPL23A|NM_000984.5	+	28719981,28720706,28722722,28723570,28723866	28720030,28720890,28722899,28723640,28724356	0.941176
NCI_H460_nuclear_fraction	chr3	11225885	11225928	11225885	-	High_confidence	7	8	50	2.390528	5.078696	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.700000
NCI_H460_nuclear_fraction	chr7	22562052	22562071	22562052	+	RAMPAGE_only	21	25	71	3.394550	5.508764	chr7	22561901	22562080	DNA|hAT-Charlie|MER5A	+	chr7	22563336	22573996	AC002480.1|ENST00000435127.1	+	22563336,22564965,22571774,22572084	22563430,22565152,22572013,22573996	0.901408
NCI_H460_nuclear_fraction	chr15	90467522	90467534	90467522	+	RAMPAGE_only	5	6	14	0.669348	3.664498	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90388260	90500371	IQGAP1|ENST00000560738.1	+	90388260,90390773,90466046,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390824,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500371	0.928571
NCI_H460_nuclear_fraction	chr8	61762479	61762510	61762509	-	RAMPAGE_only	184	185	674	32.224320	6.554992	chr8	61762175	61762546	DNA|TcMar-Tigger|MER6A	-	chr8	61759093	61765969	AC091173.1|ENST00000505627.2	-	61759093,61765890	61761764,61765969	0.508902
NCI_H460_nuclear_fraction	chr14	101730404	101730406	101730404	+	High_confidence	11	19	26	1.243075	4.315824	chr14	101730210	101730580	LTR|ERVL-MaLR|THE1B	+	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.807692
NCI_H460_nuclear_fraction	chr4	184537549	184537574	184537549	-	High_confidence	9	9	38	1.816801	4.648510	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184537043	184537354	MSTRG.31236.1	-	184537043	184537354	0.500000
NCI_H460_nuclear_fraction	chr8	73661731	73661756	73661731	-	RAMPAGE_only	3	3	11	0.525916	3.277613	chr8	73661435	73662599	LINE|L1|L1ME1	-	chr8	73420368	73738327	STAU2|ENST00000522695.5	-	73420368,73422613,73552011,73582769,73595165,73603725,73613743,73615674,73617291,73673106,73688653,73738283	73421465,73422702,73552319,73582830,73595297,73603863,73613956,73615782,73617451,73673242,73688813,73738327	0.636364
NCI_H460_nuclear_fraction	chr1	15339218	15339230	15339229	+	RAMPAGE_only	3	3	7	0.334674	2.584963	chr1	15339011	15339320	SINE|Alu|AluSx	-	chr1	15341760	15384558	FHAD1|ENST00000444385.5	+	15341760,15345082,15345415,15352876,15358109,15360477,15362641,15365826,15367462,15369369,15374501,15375602,15380700,15381230,15382027,15383155	15341888,15345190,15345523,15352984,15358283,15360703,15362726,15365933,15367622,15369502,15374631,15375730,15380796,15381451,15382193,15384558	0.714286
NCI_H460_nuclear_fraction	chr1	241631920	241632032	241631920	-	RAMPAGE_only	4	5	30	1.434317	4.456565	chr1	241631883	241632007	SINE|MIR|MIRc	+	chr1	241628863	241635930	CHML|NM_001821.3	-	241628863	241635930	1.000000
NCI_H460_nuclear_fraction	chr1	168249536	168249567	168249566	+	RAMPAGE_only	3	3	7	0.334674	2.584963	chr1	168249605	168249839	SINE|MIR|MIR	+	chr1	168226007	168253025	SFT2D2|ENST00000271375.6	+	168226007,168231513,168231833,168235100,168236588,168236711,168239130,168242500	168226142,168231600,168231919,168235182,168236624,168236770,168239160,168253025	0.857143
NCI_H460_nuclear_fraction	chr18	73264469	73264502	73264501	-	High_confidence	98	99	396	18.932983	6.812055	chr18	73264307	73264608	SINE|Alu|AluY	+	chr18	73154057	73264498	LOC400655|NR_034133.1	-	73154057,73159540,73161823,73200652,73255812,73264239	73155935,73159664,73161973,73200789,73255918,73264498	0.598485
NCI_H460_nuclear_fraction	chr8	128419059	128419444	128419255	-	RAMPAGE_only	11	20	314	15.012517	5.673609	chr8	128419050	128419209	SINE|MIR|MIRb	-	chr8	128405268	128561126	MSTRG.39221.2	-	128405268,128406775,128414213,128414540,128416117,128421742,128423500,128427657,128561069	128406633,128406846,128414408,128416010,128420823,128421814,128423593,128428384,128561126	0.993631
NCI_H460_nuclear_fraction	chr17	50271485	50271488	50271485	+	High_confidence	15	15	25	1.195264	3.753270	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
NCI_H460_nuclear_fraction	chr2	96321273	96321316	96321273	-	RAMPAGE_only	6	6	30	1.434317	4.506891	chr2	96321082	96321284	SINE|MIR|MIRb	-	chr2	96274335	96305569	SNRNP200|NM_014014.4	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305569	0.633333
NCI_H460_nuclear_fraction	chr18	976802	976841	976812	+	High_confidence	4	4	12	0.573727	2.855389	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976589	1174804	AP005328.1|ENST00000580781.5	+	976589,1133842,1159178,1162814,1174645	976895,1133894,1159398,1162853,1174804	0.666667
NCI_H460_nuclear_fraction	chr19	45424380	45424396	45424382	-	High_confidence	7	13	41	1.960233	4.884184	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	0.951220
NCI_H460_nuclear_fraction	chr6	33676367	33676371	33676367	+	High_confidence	6	6	13	0.621537	2.855389	chr6	33676226	33676457	SINE|MIR|MIRb	-	chr6	33675596	33696569	MSTRG.34054.4	+	33675596,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33683206,33684019,33684356,33684597,33684773,33685358,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33675856,33676932,33677089,33677629,33678543,33678839,33680133,33680454,33680680,33682644,33683397,33684168,33684465,33684688,33685073,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696569	0.923077
NCI_H460_nuclear_fraction	chr12	104030726	104030727	104030726	+	High_confidence	49	50	62	2.964255	5.139513	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.887097
NCI_H460_nuclear_fraction	chr14	63101968	63102005	63101987	-	High_confidence	35	35	167	7.984364	5.740403	chr14	63101880	63102189	SINE|Alu|AluY	+	chr14	62949817	63102037	KCNH5|ENST00000394964.3	-	62949817,62980871,62987071,63001330,63006365,63016830,63101799	62950559,62981264,62987187,63001459,63006472,63016954,63102037	0.538922
NCI_H460_nuclear_fraction	chr6	135813526	135813551	135813526	-	High_confidence	5	5	13	0.621537	2.855389	chr6	135813123	135813645	LTR|ERV1|LTR27	-	chr6	135805084	135813286	MSTRG.35059.1	-	135805084,135813091	135807318,135813286	0.538462
NCI_H460_nuclear_fraction	chr7	154928481	154928504	154928503	+	High_confidence	21	21	34	1.625559	4.413910	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.764706
NCI_H460_nuclear_fraction	chr12	113773685	113773686	113773685	-	High_confidence	7	8	10	0.478106	2.947703	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113744576	113773683	LINC01234|ENST00000547963.1	-	113744576,113773614	113746595,113773683	0.600000
NCI_H460_nuclear_fraction	chr3	27194193	27194198	27194197	-	High_confidence	35	51	120	5.737268	4.699498	chr3	27194122	27194414	SINE|Alu|AluYc3	-	chr3	27174440	27194231	NEK10|ENST00000460447.1	-	27174440,27174649,27192028,27194060	27174525,27174833,27192242,27194231	0.850000
NCI_H460_nuclear_fraction	chr2	171554148	171554151	171554150	+	RAMPAGE_only	5	8	10	0.478106	3.169925	chr2	171553831	171554294	LTR|ERV1|MER51A	-	chr2	171522476	171557646	CYBRD1|ENST00000375252.3	+	171522476,171553345,171554523	171522738,171553500,171557646	0.800000
NCI_H460_nuclear_fraction	chr2	218287279	218287283	218287279	-	High_confidence	9	9	20	0.956211	4.021928	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.650000
NCI_H460_nuclear_fraction	chr1	153549105	153549139	153549133	-	High_confidence	16	21	53	2.533960	5.012470	chr1	153549066	153549188	SINE|MIR|MIRb	+	chr1	153547332	153549258	S100A3|NM_002960.1	-	153547332,153548344,153549180	153547846,153548490,153549258	0.924528
NCI_H460_nuclear_fraction	chr17	59620043	59620073	59620043	+	High_confidence	6	8	22	1.051832	3.784184	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.636364
NCI_H460_nuclear_fraction	chr9	104116272	104116287	104116286	+	RAMPAGE_only	3	4	10	0.478106	2.725481	chr9	104116275	104116318	DNA|hAT-Charlie|MER5A	+	chr9	104094563	104139651	SMC2|ENST00000374787.7	+	104094563,104095323,104096147,104098445,104099643,104100092,104100388,104101959,104102423,104111580,104113315,104113963,104114690,104116199,104118170,104120026,104123107,104124911,104126640,104127285,104129644,104132008,104134414,104138017,104139138	104094838,104095552,104096297,104098568,104099682,104100203,104100433,104102193,104102573,104111814,104113475,104114081,104114829,104116319,104118375,104120162,104123232,104125105,104126784,104127480,104129845,104132125,104134575,104138165,104139651	0.700000
NCI_H460_nuclear_fraction	chr3	84193141	84193142	84193141	-	High_confidence	778	871	985	47.093405	5.533880	chr3	84193038	84193404	LTR|ERV1|LTR7	-	chr3	84184448	84192940	MSTRG.28345.1	-	84184448,84192890	84187242,84192940	0.832487
NCI_H460_nuclear_fraction	chr2	106371410	106371432	106371410	+	RAMPAGE_only	4	4	9	0.430295	2.725481	chr2	106371300	106371607	SINE|Alu|AluY	-	chr2	106369723	106378247	AC114755.5|ENST00000447760.1	+	106369723,106370938,106372233,106376450,106377964,106378179	106369869,106371159,106372443,106376545,106378055,106378247	0.777778
NCI_H460_nuclear_fraction	chr7	1533101	1533143	1533129	+	RAMPAGE_only	4	4	22	1.051832	4.070656	chr7	1533060	1533178	SINE|MIR|MIR3	-	chr7	1530976	1543043	MSTRG.35527.2	+	1530976,1539148,1539940	1538457,1539228,1543043	0.954545
NCI_H460_nuclear_fraction	chr18	63702288	63702321	63702302	+	High_confidence	7	8	28	1.338696	4.450212	chr18	63702310	63702603	SINE|Alu|AluSg	+	chr18	63702303	63723893	SERPINB11|NM_080475.3	+	63702303,63702850,63710178,63711334,63712564,63716034,63720012,63720830,63722994	63702377,63703006,63710361,63711394,63712693,63716152,63720155,63720986,63723893	0.678571
NCI_H460_nuclear_fraction	chr21	8351847	8351848	8351847	-	RAMPAGE_only	25	27	27	1.290885	4.453661	chr21	8350922	8352925	Retroposon|SVA|SVA_D	-	chr21	8210383	8211306	FP671120.3|ENST00000631211.1	-	8210383	8211306	0.703704
NCI_H460_nuclear_fraction	chr19	10577508	10577512	10577511	-	High_confidence	7	7	14	0.669348	2.777363	chr19	10577423	10577734	SINE|Alu|AluY	-	chr19	10572670	10577314	AP1M2|ENST00000587069.5	-	10572670,10574416,10574903,10577197	10572895,10574492,10575029,10577314	0.857143
NCI_H460_nuclear_fraction	chr1	185257385	185257386	185257385	+	RAMPAGE_only	4	4	6	0.286863	2.584963	chr1	185251798	185257805	LINE|L1|L1PA2	-	chr1	185157158	185291781	SWT1|NM_017673.6	+	185157158,185160832,185166571,185168339,185174371,185180390,185181945,185184242,185184742,185190548,185202653,185204699,185206624,185214506,185221848,185231576,185271322,185276603,185290673	185157314,185160925,185166652,185168398,185175113,185180450,185182057,185184344,185184931,185190642,185202799,185204863,185206763,185214655,185222036,185231708,185271389,185276668,185291781	0.500000
NCI_H460_nuclear_fraction	chrX	77669112	77669136	77669133	-	RAMPAGE_only	12	14	50	2.390528	4.782977	chrX	77669066	77669249	SINE|MIR|MIR3	-	chrX	77504877	77786216	ATRX|ENST00000373344.10	-	77504877,77520787,77521402,77522262,77523251,77557450,77558668,77574249,77589833,77593695,77599410,77599731,77600433,77616612,77618805,77620394,77633206,77633565,77634593,77635914,77652113,77654097,77656559,77663381,77664644,77676225,77681519,77684938,77688817,77693823,77696576,77697582,77698573,77717130,77785981	77508629,77520916,77521498,77522388,77523401,77557645,77558846,77574358,77589940,77593849,77599580,77599820,77600564,77616730,77618981,77620532,77633384,77633712,77634703,77636056,77652353,77654200,77656653,77663558,77664778,77676298,77684593,77685006,77688927,77693937,77696704,77697635,77698629,77717243,77786216	0.940000
NCI_H460_nuclear_fraction	chr7	8303675	8303723	8303675	+	High_confidence	5	8	33	1.577749	4.502583	chr7	8298113	8304140	LINE|L1|L1PA3	-	chr7	8303693	8348126	MSTRG.35674.3	+	8303693,8337038,8340382,8341016	8304155,8337232,8340556,8348126	0.787879
NCI_H460_nuclear_fraction	chr7	134432378	134432451	134432435	-	High_confidence	30	39	255	12.191694	6.585819	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.654902
NCI_H460_nuclear_fraction	chr2	202966037	202966038	202966037	+	RAMPAGE_only	7	9	11	0.525916	3.277613	chr2	202965833	202966297	LTR|ERVL-MaLR|MLT1F2	-	chr2	202912734	202983990	CARF|NM_001322428.1	+	202912734,202917876,202941859,202942739,202952558,202954004,202955673,202961236,202966977,202969918,202971504,202974333,202977268,202981554,202982071,202983505	202913114,202918043,202941980,202942967,202952679,202954134,202955758,202961426,202967098,202970062,202971738,202974496,202977332,202981685,202982441,202983990	0.909091
NCI_H460_nuclear_fraction	chr1	243269684	243269735	243269684	+	High_confidence	15	16	57	2.725202	4.979746	chr1	243269606	243269808	LINE|L1|L1MDb	-	chr1	243269135	243476094	MSTRG.3947.4	+	243269135,243270091,243270977,243274542,243286271,243304712,243307988,243316754,243330539,243341038,243344214,243378720,243415701,243417967,243426426,243475930	243269200,243270257,243271063,243274656,243286397,243304777,243308177,243316893,243330692,243341173,243344331,243378863,243415829,243418076,243426558,243476094	0.754386
NCI_H460_nuclear_fraction	chr5	104079918	104079919	104079918	+	High_confidence	8	9	12	0.573727	3.418296	chr5	104074362	104080381	LINE|L1|L1PA2	-	chr5	104079910	104105403	LINC02163|ENST00000514769.1	+	104079910,104080907,104081879,104104173,104105359	104080124,104081041,104081947,104104287,104105403	0.666667
NCI_H460_nuclear_fraction	chr2	45616770	45616771	45616770	-	RAMPAGE_only	13	14	19	0.908401	4.058814	chr2	45616590	45616972	LTR|ERVL-MaLR|THE1D	-	chr2	45388679	45611294	SRBD1|NM_018079.4	-	45388679,45392944,45413113,45418364,45419787,45476992,45488239,45546731,45547521,45551124,45553622,45562652,45573206,45574626,45579874,45581692,45585607,45599448,45601902,45605361,45611218	45389599,45393129,45413293,45418541,45419894,45477075,45488331,45546839,45547612,45551282,45553730,45562756,45573342,45574723,45580013,45581810,45585774,45599835,45602083,45605441,45611294	0.684211
NCI_H460_nuclear_fraction	chrX	70592315	70592316	70592315	-	RAMPAGE_only	6	8	8	0.382485	2.750000	chrX	70592084	70592558	LINE|L1|L1MB8	+	chrX	70528940	70724292	TEX11|ENST00000374320.6	-	70528940,70529834,70552125,70553305,70554650,70591750,70605400,70606958,70609090,70610502,70623949,70624838,70629610,70651449,70670376,70678803,70682673,70722617,70724075	70529187,70529999,70552246,70553414,70554800,70591823,70605517,70607029,70609177,70610543,70624006,70624924,70629735,70651552,70670514,70678889,70682825,70722696,70724292	0.750000
NCI_H460_nuclear_fraction	chr6	31400605	31400620	31400605	-	High_confidence	17	23	63	3.012065	4.828096	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31399033	31400625	MSTRG.33920.1	-	31399033	31400625	0.968254
NCI_H460_nuclear_fraction	chr15	98897570	98897620	98897619	+	High_confidence	4	4	14	0.669348	3.378783	chr15	98897562	98897746	SINE|Alu|AluJr4	-	chr15	98897479	98958181	MSTRG.14060.16	+	98897479,98899476,98908684,98911314,98913043,98915963,98916671,98922147,98923875,98924524,98929557,98930234,98934823,98935315,98939200,98942922,98948573,98957060	98897488,98899621,98908899,98911441,98913282,98916131,98916876,98922431,98924012,98924684,98929660,98930305,98935053,98935426,98939360,98943052,98948708,98958181	0.571429
NCI_H460_nuclear_fraction	chr16	4355592	4355593	4355592	-	High_confidence	315	320	320	15.299380	4.707401	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.943750
NCI_H460_nuclear_fraction	chr17	59619888	59619923	59619894	+	High_confidence	509	698	2379	113.741330	6.617495	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.868012
NCI_H460_nuclear_fraction	chr2	73736756	73736757	73736756	-	High_confidence	12	12	13	0.621537	3.188722	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73731905	73737335	TPRKB|ENST00000470012.1	-	73731905,73732583,73734428,73737301	73732285,73732700,73734591,73737335	0.692308
NCI_H460_nuclear_fraction	chrX	111127912	111128309	111127912	+	RAMPAGE_only	10	13	341	16.303402	6.284900	chrX	111127556	111127927	LINE|RTE-X|L4_A_Mam	+	chrX	111123103	111131359	MSTRG.42263.21	+	111123103,111124250,111126921	111123278,111126869,111131359	1.000000
NCI_H460_nuclear_fraction	chr5	32531831	32531865	32531864	+	High_confidence	1406	1436	4248	203.099272	5.397240	chr5	32531850	32532021	SINE|MIR|MIR3	-	chr5	32531632	32601323	SUB1|ENST00000506237.5	+	32531632,32588511,32591562,32598960,32601004	32531916,32588584,32591685,32599069,32601323	0.899953
NCI_H460_nuclear_fraction	chrX	151958581	151958582	151958581	-	RAMPAGE_only	61	67	67	3.203308	4.687064	chrX	151958580	151958655	DNA|DNA|MER135	-	chrX	151953124	151959723	GABRE|ENST00000486255.1	-	151953124,151955367,151955707	151955084,151955567,151959723	0.985075
NCI_H460_nuclear_fraction	chr11	27220101	27220167	27220117	-	High_confidence	10	10	69	3.298929	5.082102	chr11	27219703	27225730	LINE|L1|L1PA2	+	chr11	27062982	27220113	BBOX1-AS1|NR_125766.1	-	27062982,27066491,27151049,27217316,27219686	27063060,27066662,27151152,27217480,27220113	0.594203
NCI_H460_nuclear_fraction	chr7	143712452	143712537	143712452	-	High_confidence	26	28	167	7.984364	6.038929	chr7	143712390	143712537	SINE|Alu|FAM	+	chr7	143710025	143712482	MSTRG.37564.1	-	143710025	143712482	0.940120
NCI_H460_nuclear_fraction	chr6	100857828	100857861	100857828	-	RAMPAGE_only	3	3	8	0.382485	2.750000	chr6	100856501	100857860	LINE|L1|L1ME3	-	chr6	100856302	100881311	ASCC3|ENST00000369143.2	-	100856302,100864063,100867907,100881060	100859202,100864214,100868038,100881311	0.875000
NCI_H460_nuclear_fraction	chr2	227888491	227888548	227888491	+	High_confidence	63	73	574	27.443263	7.221167	chr2	227888311	227888642	LTR|ERVL|ERV3-16A3_LTR	-	chr2	227888401	227924341	MSTRG.24471.9	+	227888401,227889855,227891254,227893794,227898181,227903001,227904928,227906235,227907137,227912253,227921398,227923933	227888601,227890000,227891313,227893917,227898281,227903109,227905035,227906338,227907252,227918856,227921561,227924341	0.763066
NCI_H460_nuclear_fraction	chr1	32637312	32637370	32637312	-	RAMPAGE_only	6	6	27	1.290885	4.310443	chr1	32637281	32637581	SINE|Alu|AluSx3	+	chr1	32621829	32634061	ZBTB8OS|ENST00000498691.5	-	32621829,32627507,32631826,32632207,32633644,32633950	32621948,32627544,32631879,32632345,32633727,32634061	0.888889
NCI_H460_nuclear_fraction	chr4	158172987	158173025	158173024	-	High_confidence	324	334	465	22.231912	7.234084	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158124603	158173046	MSTRG.31080.2	-	158124603,158155610,158170465,158172867	158131012,158155825,158171599,158173046	0.550538
NCI_H460_nuclear_fraction	chr10	132331583	132331608	132331583	-	High_confidence	2	2	8	0.382485	2.807355	chr10	132331498	132331624	LTR|ERVL|LTR16E1	-	chr10	132330280	132331837	STK32C|ENST00000456004.1	-	132330280,132331435	132330485,132331837	0.750000
NCI_H460_nuclear_fraction	chr1	155915854	155915909	155915854	-	RAMPAGE_only	6	7	23	1.099643	3.916127	chr1	155915512	155915805	SINE|Alu|AluSx1	-	chr1	155913044	155934399	KHDC4|ENST00000368320.7	-	155913044,155916624,155917498,155921374,155921860,155923626,155925631,155926675,155927103,155929295,155929711,155933632,155934335	155915964,155916737,155917672,155921628,155921918,155923687,155925843,155926839,155927156,155929375,155929840,155933849,155934399	0.913043
NCI_H460_nuclear_fraction	chr3	149386050	149386055	149386054	+	RAMPAGE_only	49	67	97	4.637625	5.705925	chr3	149385643	149386323	LTR|ERV1|MER51A	-	chr3	149378218	149386581	TM4SF1-AS1|ENST00000484046.1	+	149378218,149384992,149386367	149378315,149385169,149386581	0.567010
NCI_H460_nuclear_fraction	chr15	53540724	53540829	53540743	-	High_confidence	65	65	241	11.522346	5.960292	chr15	53540633	53546677	LINE|L1|L1PA2	+	chr15	53515162	53540751	MSTRG.13237.5	-	53515162,53523217,53540661	53517754,53523322,53540751	0.630705
NCI_H460_nuclear_fraction	chr2	95121548	95121560	95121557	-	High_confidence	4	5	13	0.621537	3.700440	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.769231
NCI_H460_nuclear_fraction	chr1	67421254	67421264	67421254	-	High_confidence	2	2	7	0.334674	2.521641	chr1	67421187	67421297	SINE|MIR|MIR1_Amn	-	chr1	67415272	67420565	SERBP1|ENST00000462814.1	-	67415272,67420008	67415339,67420565	0.714286
NCI_H460_nuclear_fraction	chr7	867957	867999	867998	+	High_confidence	3	3	15	0.717158	3.521641	chr7	867956	868098	LTR|ERVL|LTR41	-	chr7	868473	874902	SUN1|ENST00000497943.1	+	868473,872469,873214	869516,872562,874902	0.933333
NCI_H460_nuclear_fraction	chr10	101730047	101730119	101730060	-	High_confidence	56	60	311	14.869085	5.561123	chr10	101729855	101730163	SINE|Alu|AluY	+	chr10	101701509	101730112	MSTRG.5406.1	-	101701509,101704452,101708164,101729716	101702295,101704705,101708401,101730112	0.913183
NCI_H460_nuclear_fraction	chr14	73463624	73463642	73463624	-	High_confidence	6	6	15	0.717158	3.773557	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73460934	73463618	AC005280.2|ENST00000557577.1	-	73460934,73462528,73463474	73461264,73462689,73463618	0.666667
NCI_H460_nuclear_fraction	chr4	184343954	184343968	184343967	-	RAMPAGE_only	10	16	30	1.434317	4.651084	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184340755	184353977	LINC02363|ENST00000317596.3	-	184340755,184350088,184353312	184342053,184350278,184353977	0.533333
NCI_H460_nuclear_fraction	chr17	59651214	59651308	59651214	+	RAMPAGE_only	5	5	33	1.577749	4.039212	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.818182
NCI_H460_nuclear_fraction	chr7	93591304	93591383	93591324	+	High_confidence	68	81	644	30.790003	5.933489	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591572	93911075	GNGT1|ENST00000455502.5	+	93591572,93886505,93906735,93909482	93591771,93886549,93906842,93911075	0.507764
NCI_H460_nuclear_fraction	chr1	147517874	147517876	147517875	-	High_confidence	10	19	19	0.908401	3.794653	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147382191	147517875	LINC00624|NR_038423.2	-	147382191,147514337,147515520,147517442	147384863,147514448,147515676,147517875	0.684211
NCI_H460_nuclear_fraction	chr8	128577740	128577993	128577866	-	RAMPAGE_only	8	9	129	6.167563	4.716323	chr8	128577669	128577881	SINE|MIR|MIR	-	chr8	128576397	128582150	MSTRG.39219.1	-	128576397,128582088	128582048,128582150	0.992248
NCI_H460_nuclear_fraction	chr2	203015508	203015535	203015508	+	High_confidence	3	3	7	0.334674	2.807355	chr2	203015479	203015763	SINE|Alu|AluSx1	-	chr2	203015790	203041857	NBEAL1|ENST00000492870.1	+	203015790,203016155,203041764	203015864,203016427,203041857	0.714286
NCI_H460_nuclear_fraction	chr2	230342282	230342304	230342303	+	High_confidence	3	3	9	0.430295	2.947703	chr2	230337069	230342513	LINE|L1|L1HS	-	chr2	230342385	230403730	MSTRG.24510.6	+	230342385,230357804,230358963,230361613,230370907,230371597,230383509,230385223,230388558,230389918,230392086,230393413,230396756,230400126,230401663,230402797	230342622,230357967,230359132,230361697,230370967,230371651,230383575,230385304,230388633,230390023,230392229,230393461,230396798,230401443,230401807,230403730	0.888889
NCI_H460_nuclear_fraction	chr11	119314492	119314502	119314492	-	RAMPAGE_only	3	3	10	0.478106	2.921928	chr11	119314166	119314455	SINE|Alu|AluJr	-	chr11	119308528	119317116	MCAM|ENST00000264036.5	-	119308528,119310348,119310755,119311089,119311279,119311529,119311807,119312051,119312265,119312526,119312769,119314488,119314678,119314832,119315138,119317034	119309915,119310466,119310903,119311185,119311421,119311651,119311949,119312170,119312428,119312648,119312949,119314576,119314749,119315040,119315263,119317116	0.900000
NCI_H460_nuclear_fraction	chr3	84192931	84192963	84192962	-	High_confidence	8	8	29	1.386506	3.910233	chr3	84188584	84193036	LTR|ERV1|HERVH-int	-	chr3	84184448	84192940	MSTRG.28345.1	-	84184448,84192890	84187242,84192940	0.586207
NCI_H460_nuclear_fraction	chr4	39032900	39032954	39032920	-	High_confidence	4	5	22	1.051832	4.121928	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	38993734	39032922	TMEM156|ENST00000344606.6	-	38993734,38998723,39032225,39032641	38993998,38998909,39032443,39032922	0.681818
NCI_H460_nuclear_fraction	chr1	75375956	75376031	75375985	-	High_confidence	11	13	50	2.390528	4.734722	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75227805	75376283	MSTRG.1666.3	-	75227805,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75376083	75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75376283	0.780000
NCI_H460_nuclear_fraction	chr21	40383200	40383231	40383230	+	High_confidence	9	11	21	1.004022	3.784942	chr21	40383047	40383359	SINE|Alu|AluSx	+	chr21	40383083	40385358	DSCAM-AS1|NR_038899.1	+	40383083,40383505,40384578	40383408,40383584,40385358	0.904762
NCI_H460_nuclear_fraction	chr9	129333923	129333926	129333923	+	High_confidence	2	3	7	0.334674	2.807355	chr9	129333713	129334014	LINE|L2|L2b	+	chr9	129333905	129347399	LINC01503|ENST00000436710.5	+	129333905,129338791,129341735,129347225	129334198,129338917,129342043,129347399	1.000000
NCI_H460_nuclear_fraction	chr1	68881358	68881420	68881419	+	High_confidence	13	18	98	4.685435	5.323858	chr1	68875777	68881805	LINE|L1|L1PA2	-	chr1	68881576	68943452	AL033530.1|ENST00000646995.1	+	68881576,68942580	68882003,68943452	0.765306
NCI_H460_nuclear_fraction	chr14	81170394	81170431	81170430	-	High_confidence	4	4	22	1.051832	4.186704	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.545455
NCI_H460_nuclear_fraction	chr15	74350753	74350754	74350753	+	High_confidence	23	23	27	1.290885	3.979098	chr15	74350554	74350908	LTR|ERV1|MER51B	+	chr15	74350767	74361903	PPIAP46|ENST00000564109.1	+	74350767,74354525,74356282,74361513	74350939,74354685,74356475,74361903	0.888889
NCI_H460_nuclear_fraction	chr1	172040700	172040726	172040708	+	RAMPAGE_only	5	5	37	1.768991	4.957854	chr1	172040532	172041596	LINE|L2|L2c	-	chr1	171970121	172253578	DNM3|ENST00000523513.1	+	171970121,171987655,171988944,172032401,172033104,172038318,172042008,172044384,172048611,172068818,172081831,172092823,172131174,172253572	171970245,171987805,171989148,172032500,172033265,172038461,172042144,172044452,172048750,172068905,172081902,172092875,172131288,172253578	0.540541
NCI_H460_nuclear_fraction	chr2	101281862	101281880	101281862	-	RAMPAGE_only	2	2	7	0.334674	2.584963	chr2	101281489	101281823	SINE|Alu|AluJo	-	chr2	101276090	101308696	RNF149|ENST00000295317.3	-	101276090,101281858,101286080,101288972,101294013,101294930,101308128	101277281,101282057,101286177,101289055,101294082,101295181,101308696	0.857143
NCI_H460_nuclear_fraction	chr3	190121906	190121929	190121906	-	High_confidence	19	20	37	1.768991	3.921721	chr3	190121809	190122109	SINE|Alu|AluSx	+	chr3	189988914	190121678	P3H2|ENST00000426003.1	-	189988914,189994093,189995289,190121536	189989038,189994283,189995442,190121678	0.729730
NCI_H460_nuclear_fraction	chrX	147937519	147937552	147937551	+	RAMPAGE_only	3	4	12	0.573727	3.251629	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	MSTRG.42554.21	+	147940580,147943130,147945533,147948682	147940662,147945051,147945616,147950315	1.000000
NCI_H460_nuclear_fraction	chr19	48445512	48445513	48445512	+	High_confidence	47	47	51	2.438339	4.547247	chr19	48445204	48445589	LTR|ERVL|LTR82A	-	chr19	48445772	48453907	GRWD1|NM_031485.3	+	48445772,48446384,48446680,48450312,48450665,48451033,48452707	48446192,48446502,48446843,48450526,48450808,48451231,48453907	0.745098
NCI_H460_nuclear_fraction	chr11	123625639	123625747	123625717	+	RAMPAGE_only	9	11	61	2.916444	4.819303	chr11	123625572	123625740	SINE|MIR|MIR3	+	chr11	123591086	123627774	GRAMD1B|ENST00000646146.1	+	123591086,123594081,123594734,123595941,123600467,123603425,123605321,123606608,123608658,123609794,123610195,123612760,123613454,123614744,123618344,123618692,123619106,123622505	123591541,123594166,123594838,123596037,123600548,123603541,123605478,123606798,123608802,123609913,123610338,123612864,123613658,123614835,123618356,123618800,123619224,123627774	0.934426
NCI_H460_nuclear_fraction	chr1	1655445	1655474	1655445	-	RAMPAGE_only	3	3	12	0.573727	3.251629	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.666667
NCI_H460_nuclear_fraction	chr4	138251915	138251954	138251953	-	RAMPAGE_only	4	5	14	0.669348	2.968919	chr4	138251504	138252132	LINE|L1|L1MC4	+	chr4	138164093	138242349	SLC7A11|NM_014331.3	-	138164093,138179216,138180640,138182296,138183201,138185120,138214584,138219265,138223198,138232266,138236324,138241792	138172017,138179394,138180790,138182393,138183305,138185244,138214629,138219365,138223324,138232382,138236451,138242349	0.571429
NCI_H460_nuclear_fraction	chr8	30653972	30653981	30653972	-	RAMPAGE_only	5	5	12	0.573727	3.251629	chr8	30653838	30654118	SINE|Alu|AluJb	+	chr8	30607103	30657005	GTF2E2|ENST00000518599.5	-	30607103,30612298,30614607,30635031,30653432,30656868	30607150,30612481,30614715,30635123,30653602,30657005	0.583333
NCI_H460_nuclear_fraction	chr3	114624984	114625034	114625006	-	High_confidence	116	132	418	19.984815	6.942107	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.509569
NCI_H460_nuclear_fraction	chr16	64985654	64985689	64985654	-	RAMPAGE_only	2	2	8	0.382485	2.807355	chr16	64985627	64985872	DNA|hAT-Charlie|MER20	+	chr16	64984695	64988334	CDH11|ENST00000619158.1	-	64984695	64988334	0.750000
NCI_H460_nuclear_fraction	chr8	100919693	100919706	100919701	-	RAMPAGE_only	5	5	17	0.812780	2.852217	chr8	100919701	100920019	LTR|ERV1|MER34B-int	-	chr8	100918575	100950571	YWHAZ|NM_001135702.1	-	100918575,100923954,100924134,100924915,100948595,100950405	100920752,100924050,100924298,100925039,100948900,100950571	0.941176
NCI_H460_nuclear_fraction	chr19	45450739	45450766	45450765	-	High_confidence	5	5	16	0.764969	3.405639	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.562500
NCI_H460_nuclear_fraction	chr17	60887258	60887274	60887272	+	High_confidence	3	5	10	0.478106	2.921928	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887278	60989988	BCAS3|ENST00000586484.1	+	60887278,60889694,60902619,60910531,60924406,60947218,60989970	60887447,60889771,60902703,60910702,60924500,60947352,60989988	0.700000
NCI_H460_nuclear_fraction	chr1	188822666	188822683	188822666	-	High_confidence	6	8	28	1.338696	4.521641	chr1	188822207	188822962	LINE|L1|L1M4b	+	chr1	188782262	188822659	MSTRG.3140.7	-	188782262,188814332,188822181	188782413,188814611,188822659	0.678571
NCI_H460_nuclear_fraction	chr15	43133119	43133141	43133134	+	High_confidence	6	6	15	0.717158	3.324863	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133143	43148788	TMEM62|ENST00000569535.5	+	43133143,43135511,43146492,43148754	43133402,43135649,43146634,43148788	0.533333
NCI_H460_nuclear_fraction	chr7	158433259	158433261	158433259	+	High_confidence	11	22	22	1.051832	4.186704	chr7	158432973	158433362	LINE|L1|L1ME3	-	chr7	158433050	158451525	MSTRG.37761.3	+	158433050,158443149,158444243,158445778,158450423	158433573,158443349,158445549,158448271,158451525	0.772727
NCI_H460_nuclear_fraction	chr3	12840635	12840636	12840635	-	High_confidence	15	15	15	0.717158	3.456565	chr3	12840594	12840703	SINE|MIR|MIRc	+	chr3	12834944	12840450	RPL32|NM_001007074.1	-	12834944,12839348,12840141	12836223,12839530,12840450	1.000000
NCI_H460_nuclear_fraction	chr1	88887267	88887284	88887267	-	RAMPAGE_only	3	3	12	0.573727	3.022055	chr1	88886926	88887218	SINE|Alu|AluSx1	-	chr1	88853223	88891496	GTF2B|ENST00000448623.5	-	88853223,88857372,88859881,88860139,88863980,88887260,88891482	88853346,88857487,88860011,88860286,88864114,88887367,88891496	1.000000
NCI_H460_nuclear_fraction	chr2	142812180	142812222	142812180	+	High_confidence	86	96	276	13.195715	6.689746	chr2	142806275	142812293	LINE|L1|L1PA3	-	chr2	142812128	143053999	MSTRG.23438.1	+	142812128,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142812388,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143053999	0.742754
NCI_H460_nuclear_fraction	chr17	6853998	6854033	6854025	+	High_confidence	5	5	13	0.621537	3.418296	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853942	6900724	MSTRG.16382.6	+	6853942,6854213,6892002,6894317,6894883,6895095,6895342,6896315,6896553,6898203,6898528,6898799,6899390,6899592,6899867	6854060,6854453,6892075,6894519,6895006,6895199,6895503,6896459,6896763,6898290,6898698,6898929,6899490,6899706,6900724	0.538462
NCI_H460_nuclear_fraction	chr14	50756879	50757005	50756942	-	RAMPAGE_only	3	3	27	1.290885	4.392747	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.962963
NCI_H460_nuclear_fraction	chr5	14653390	14653391	14653390	-	High_confidence	18	18	18	0.860590	3.078176	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	1.000000
NCI_H460_nuclear_fraction	chr11	5505651	5505652	5505651	-	High_confidence	9	10	12	0.573727	3.277613	chr11	5505485	5505844	LTR|ERVL-MaLR|THE1B	-	chr11	5268344	5505652	HBE1|ENST00000292896.3	-	5268344,5269453,5269798,5505568	5268597,5269676,5270156,5505652	0.500000
NCI_H460_nuclear_fraction	chr11	66438597	66438623	66438597	-	High_confidence	2	2	6	0.286863	2.584963	chr11	66438453	66438566	SINE|MIR|MIR	-	chr11	66435833	66438826	MSTRG.6875.4	-	66435833,66436801,66437103,66437349,66438163	66436112,66436909,66437263,66437443,66438826	1.000000
NCI_H460_nuclear_fraction	chr6	84138444	84138479	84138446	+	RAMPAGE_only	5	9	28	1.338696	4.137538	chr6	84138379	84138492	LINE|L1|L1MEc	+	chr6	84135452	84146150	MSTRG.34607.1	+	84135452,84139528,84144561,84145939	84135498,84139622,84144630,84146150	0.857143
NCI_H460_nuclear_fraction	chr9	105573652	105573655	105573652	+	RAMPAGE_only	6	7	14	0.669348	3.700440	chr9	105573640	105574325	LINE|L1|L1M7	+	chr9	105574916	105641118	FKTN|ENST00000357998.9	+	105574916,105596597,105601144,105604214,105607818,105615277,105617958,105619933,105635050,105640100	105575137,105596657,105601348,105604492,105607951,105615407,105618092,105620061,105635148,105641118	0.500000
NCI_H460_nuclear_fraction	chr20	36168043	36168082	36168081	+	High_confidence	17	17	46	2.199286	4.691721	chr20	36167948	36168192	LTR?|LTR?|MamRep605	-	chr20	36167973	36229340	MSTRG.25338.14	+	36167973,36173883,36175550,36177951,36178629,36182271,36185116,36187675,36188346,36190276,36190621,36194211,36195328,36197858,36209487,36212271,36214359,36218875,36219760,36221863,36222277,36229331	36168116,36173954,36175715,36178056,36178672,36182347,36185335,36187763,36188499,36190374,36190797,36194360,36195364,36198041,36209898,36212376,36214440,36218962,36219844,36221944,36222394,36229340	0.739130
NCI_H460_nuclear_fraction	chr2	227871053	227871054	227871053	+	High_confidence	14	15	17	0.812780	3.852169	chr2	227871080	227871251	SINE|MIR|MIR	+	chr2	227871053	227924344	DAW1|ENST00000373666.6	+	227871053,227885350,227889855,227891254,227893794,227898181,227903001,227904928,227906235,227907137,227912253,227918779,227921398,227923933	227871729,227885423,227890000,227891313,227893917,227898281,227903109,227905035,227906338,227907252,227912469,227918856,227921561,227924344	1.000000
NCI_H460_nuclear_fraction	chr1	42959041	42959078	42959077	+	High_confidence	17	17	74	3.537982	4.243607	chr1	42959103	42959181	SINE|MIR|MIR3	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.864865
NCI_H460_nuclear_fraction	chr18	976418	976496	976438	+	High_confidence	17	17	71	3.394550	5.438066	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976588	1159391	AP005328.1|ENST00000577719.5	+	976588,1133842,1137813,1159178	976895,1133952,1137864,1159391	0.535211
NCI_H460_nuclear_fraction	chrX	111127254	111127297	111127283	+	RAMPAGE_only	9	9	22	1.051832	3.921928	chrX	111126947	111127294	LINE|L1|L1ME4a	-	chrX	111123103	111131359	MSTRG.42263.21	+	111123103,111124250,111126921	111123278,111126869,111131359	0.909091
NCI_H460_nuclear_fraction	chr2	113830917	113830932	113830921	-	RAMPAGE_only	12	12	42	2.008044	4.671730	chr2	113830816	113830918	SINE|MIR|MIRb	-	chr2	113818911	113823877	MSTRG.23188.1	-	113818911,113822166	113820588,113823877	0.904762
NCI_H460_nuclear_fraction	chr1	188888539	188888566	188888555	-	High_confidence	30	30	83	3.968277	4.603456	chr1	188888422	188889119	DNA|TcMar-Tigger|MER44D	+	chr1	188869476	188889007	MSTRG.3167.1	-	188869476,188887240	188875882,188889007	0.963855
NCI_H460_nuclear_fraction	chr22	36481334	36481353	36481334	-	High_confidence	3	4	12	0.573727	3.459432	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.666667
NCI_H460_nuclear_fraction	chr8	102925026	102925070	102925036	+	RAMPAGE_only	12	12	69	3.298929	5.204535	chr8	102925075	102925163	DNA|hAT-Charlie|MER5B	+	chr8	102927470	102977738	MSTRG.38990.14	+	102927470,102930313,102937623,102941920,102977586	102927612,102930518,102937757,102942053,102977738	0.666667
NCI_H460_nuclear_fraction	chr12	122592666	122592871	122592814	+	High_confidence	8	8	107	5.115730	5.106225	chr12	122591840	122593220	LTR|ERV1|LTR12C	+	chr12	122592817	122602644	KNTC1|ENST00000535186.1	+	122592817,122594275,122602568	122593184,122594385,122602644	0.747664
NCI_H460_nuclear_fraction	chr3	183034353	183034367	183034366	-	RAMPAGE_only	7	8	18	0.860590	3.381580	chr3	183034168	183034477	SINE|Alu|AluY	+	chr3	183022468	183037355	MCCC1|ENST00000489909.1	-	183022468,183025754,183029092,183033990,183037217	183022554,183025804,183029189,183034077,183037355	0.500000
NCI_H460_nuclear_fraction	chr4	103140842	103140881	103140842	-	RAMPAGE_only	1	1	11	0.525916	3.321928	chr4	103140692	103140796	LINE|L1|L1MC	-	chr4	103105806	103149308	MSTRG.30616.4	-	103105806,103110827,103114454,103116576,103120147,103122870,103132692,103133694,103136140,103138350,103140255,103140813,103141749,103144330,103145049,103145522,103147355,103148843,103149117	103109089,103111011,103114552,103116689,103120333,103123089,103132896,103133892,103136359,103138449,103140414,103141104,103141908,103144618,103145334,103146107,103147646,103148999,103149308	0.636364
NCI_H460_nuclear_fraction	chr4	49495012	49495056	49495044	-	High_confidence	6	7	17	0.812780	3.852169	chr4	49494957	49495361	LTR|ERV1|MER61C	+	chr4	49486935	49495026	MSTRG.30141.2	-	49486935,49488433,49494948	49487096,49488647,49495026	0.941176
NCI_H460_nuclear_fraction	chr11	61949801	61949844	61949820	+	High_confidence	15	20	38	1.816801	4.514102	chr11	61949804	61949945	SINE|MIR|MIR3	-	chr11	61949820	61964461	BEST1|ENST00000378043.8	+	61949820,61951770,61955106,61955717,61956843,61957386,61958145,61959497,61959891,61962254,61964103	61950427,61951958,61955201,61955951,61956998,61957464,61958298,61959578,61960043,61962893,61964461	0.763158
NCI_H460_nuclear_fraction	chr5	43018758	43018772	43018771	-	High_confidence	10	10	21	1.004022	4.221928	chr5	43018573	43018883	SINE|Alu|AluY	+	chr5	43014728	43018811	LOC648987|NR_034086.1	-	43014728,43017073	43015150,43018811	0.952381
NCI_H460_nuclear_fraction	chr7	152648030	152648050	152648030	-	RAMPAGE_only	2	2	11	0.525916	2.921928	chr7	152647867	152647996	LINE|L1|L1ME3D	-	chr7	152413690	152649601	MSTRG.37699.1	-	152413690,152642618,152649457	152413820,152649363,152649601	0.909091
NCI_H460_nuclear_fraction	chr16	58755976	58755977	58755976	-	RAMPAGE_only	41	42	42	2.008044	4.521829	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	0.952381
NCI_H460_nuclear_fraction	chr8	98739029	98739048	98739047	-	RAMPAGE_only	4	5	8	0.382485	2.521641	chr8	98738605	98744745	LINE|L1|L1PA3	+	chr8	98579695	98825646	STK3|ENST00000521649.5	-	98579695,98596031,98767242,98774738,98825514	98579789,98596169,98767371,98774819,98825646	0.875000
NCI_H460_nuclear_fraction	chr3	127595069	127595102	127595101	-	RAMPAGE_only	3	3	9	0.430295	2.947703	chr3	127594981	127595216	LTR|ERVL-MaLR|MLT1F	-	chr3	127576615	127598251	TPRA1|ENST00000490643.5	-	127576615,127576820,127576989,127579739,127580021,127591889,127594799,127598195	127576696,127576893,127577076,127579872,127580163,127591950,127594933,127598251	0.555556
NCI_H460_nuclear_fraction	chr7	107580242	107580265	107580245	+	High_confidence	850	863	4333	207.163170	7.603141	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.811447
NCI_H460_nuclear_fraction	chr15	69080849	69080891	69080890	+	High_confidence	118	123	329	15.729675	6.781246	chr15	69080204	69081232	LINE|L1|L1M7	-	chr15	69080869	69099962	MSTRG.13521.9	+	69080869,69090914,69094700,69099595	69081376,69092242,69097673,69099962	0.759878
NCI_H460_nuclear_fraction	chr2	196527499	196527507	196527506	-	High_confidence	6	6	17	0.812780	3.969816	chr2	196521488	196527500	LINE|L1|L1PA2	-	chr2	196199271	196527462	MSTRG.24002.5	-	196199271,196215864,196217007,196220038,196220794,196222210,196225771,196228101,196240448,196242083,196253919,196271192,196274020,196278527,196292564,196306487,196307129,196307934,196317273,196318551,196320338,196322477,196324979,196329574,196334423,196343656,196433131,196527406	196201388,196215977,196217093,196220153,196220941,196222340,196225870,196228254,196240562,196242204,196254029,196271289,196274123,196278662,196292750,196306612,196307233,196308085,196317369,196319904,196320439,196322620,196325149,196329650,196334518,196343764,196433458,196527462	0.588235
NCI_H460_nuclear_fraction	chr3	39407605	39407744	39407685	+	High_confidence	6	6	82	3.920466	5.784184	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.719512
NCI_H460_nuclear_fraction	chr2	55866783	55867038	55866813	-	RAMPAGE_only	24	26	113	5.402594	5.398831	chr2	55866767	55866844	DNA|hAT-Ac|OldhAT1	+	chr2	55866611	55923776	EFEMP1|ENST00000635671.1	-	55866611,55870719,55870999,55874945,55881611,55917664,55918218,55922359,55923710	55867234,55870915,55871123,55875065,55881734,55918084,55918267,55922447,55923776	0.592920
NCI_H460_nuclear_fraction	chr16	67183444	67183467	67183444	-	High_confidence	2	3	10	0.478106	2.947703	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183941	MSTRG.15491.2	-	67175603,67178009,67178198,67179814,67180040,67181557,67183261	67176975,67178107,67179562,67179958,67180666,67181697,67183941	0.600000
NCI_H460_nuclear_fraction	chr20	37298760	37298761	37298760	+	RAMPAGE_only	29	29	30	1.434317	4.254196	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.966667
NCI_H460_nuclear_fraction	chr17	41521747	41521770	41521747	-	High_confidence	2	3	8	0.382485	2.750000	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41513745	41521774	KRT15|ENST00000474031.5	-	41513745,41515884,41516103,41516807,41518329,41521684	41515692,41516010,41516265,41516964,41518461,41521774	0.875000
NCI_H460_nuclear_fraction	chr9	100527225	100527226	100527225	+	RAMPAGE_only	52	52	62	2.964255	5.551969	chr9	100527228	100533251	LINE|L1|L1PA2	+	chr9	100473237	100577636	TMEFF1|NM_003692.4	+	100473237,100498764,100509004,100513306,100516674,100547743,100550094,100561396,100572517,100576515	100473740,100498874,100509134,100513333,100516771,100547892,100550160,100561520,100572676,100577636	0.612903
NCI_H460_nuclear_fraction	chr4	128427974	128428064	128428005	+	High_confidence	17	17	70	3.346739	5.511865	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.742857
NCI_H460_nuclear_fraction	chr1	189149762	189149763	189149762	+	RAMPAGE_only	3028	3081	4311	206.111337	7.665902	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	188905687	189605290	MSTRG.3190.4	+	188905687,189150541,189307728,189568328,189603482,189605097	188905926,189150759,189307878,189568395,189603622,189605290	0.508467
NCI_H460_nuclear_fraction	chr12	46254864	46254901	46254900	-	RAMPAGE_only	3	3	10	0.478106	2.947703	chr12	46253756	46255325	LTR|ERV1|MER41-int	-	chr12	46183062	46256989	MSTRG.8594.1	-	46183062,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46254813,46256691	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46254936,46256989	0.800000
NCI_H460_nuclear_fraction	chr6	43013392	43013393	43013392	-	High_confidence	17	17	25	1.195264	4.334963	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.960000
NCI_H460_nuclear_fraction	chr1	15340630	15340669	15340668	+	RAMPAGE_only	11	13	23	1.099643	3.975418	chr1	15340279	15340713	LTR|ERVL-MaLR|MLT1H	-	chr1	15341760	15384558	FHAD1|ENST00000444385.5	+	15341760,15345082,15345415,15352876,15358109,15360477,15362641,15365826,15367462,15369369,15374501,15375602,15380700,15381230,15382027,15383155	15341888,15345190,15345523,15352984,15358283,15360703,15362726,15365933,15367622,15369502,15374631,15375730,15380796,15381451,15382193,15384558	0.869565
NCI_H460_nuclear_fraction	chr12	42442590	42442649	42442634	+	High_confidence	4	4	15	0.717158	2.896292	chr12	42442665	42443554	LTR|ERVK|HERVK22-int	+	chr12	42442648	42448623	PPHLN1|ENST00000624028.1	+	42442648	42448623	0.933333
NCI_H460_nuclear_fraction	chr12	109881402	109881415	109881414	-	High_confidence	29	34	71	3.394550	5.305857	chr12	109881109	109881661	LTR|ERV1|MER51B	+	chr12	109852260	109881404	MSTRG.9633.2	-	109852260,109855618,109857525,109858682,109880909	109852737,109855769,109857659,109858741,109881404	0.746479
NCI_H460_nuclear_fraction	chrX	65620300	65620339	65620312	+	RAMPAGE_only	7	7	23	1.099643	3.594466	chrX	65614680	65620735	LINE|L1|L1PA2	-	chrX	65588380	65625865	MSN|ENST00000609205.5	+	65588380,65588885,65589645,65624643	65588612,65589068,65589769,65625865	0.652174
NCI_H460_nuclear_fraction	chr7	101308468	101308497	101308496	+	High_confidence	3	3	12	0.573727	2.732159	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308345	101310985	MSTRG.36939.1	+	101308345,101310397	101310286,101310985	0.916667
NCI_H460_nuclear_fraction	chr21	33945809	33945810	33945809	-	RAMPAGE_only	62	62	62	2.964255	3.784785	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
NCI_H460_nuclear_fraction	chr11	834261	834262	834261	+	RAMPAGE_only	13	13	16	0.764969	3.640224	chr11	834112	834386	SINE|Alu|AluSx1	+	chr11	832985	836525	CD151|ENST00000525868.5	+	832985,834457,836062,836250	833026,834591,836153,836525	0.687500
NCI_H460_nuclear_fraction	chr1	234433726	234433753	234433736	-	RAMPAGE_only	7	7	19	0.908401	3.932138	chr1	234433699	234433896	LINE|L2|L2c	+	chr1	234391312	234479103	TARBP1|ENST00000040877.1	-	234391312,234392415,234393361,234393645,234398381,234401180,234405902,234410444,234418083,234420701,234425672,234427316,234427575,234429135,234429415,234430086,234433409,234437274,234446802,234448479,234450427,234457666,234459229,234460260,234463836,234465655,234467501,234471187,234472713,234478172	234391745,234392552,234393486,234393837,234398553,234401262,234406099,234410531,234418233,234420812,234425793,234427388,234427766,234429324,234429677,234430301,234433571,234437372,234446975,234448579,234450566,234457756,234459326,234460396,234463934,234465708,234467650,234471257,234472811,234479103	0.789474
NCI_H460_nuclear_fraction	chr1	235330423	235330461	235330459	+	RAMPAGE_only	14	19	34	1.625559	4.687500	chr1	235330202	235330492	SINE|Alu|AluYf1	+	chr1	235329028	235342559	GGPS1|ENST00000497327.1	+	235329028,235335241,235341707,235342010	235329183,235335334,235341778,235342559	0.794118
NCI_H460_nuclear_fraction	chr7	143852673	143852685	143852684	-	RAMPAGE_only	5	5	13	0.621537	3.418296	chr7	143852406	143853075	LINE|L1|L1M6B	-	chr7	143851367	143885373	TCAF1|NM_001206941.1	-	143851367,143857099,143858823,143860207,143861094,143862415,143862801,143885209	143854142,143857350,143859161,143860447,143861308,143862513,143863796,143885373	0.923077
NCI_H460_nuclear_fraction	chr9	112803955	112804010	112803991	+	RAMPAGE_only	2	2	10	0.478106	2.846439	chr9	112798107	112804159	LINE|L1|L1HS	-	chr9	112750853	112874987	SNX30|NM_001012994.1	+	112750853,112804775,112817704,112830724,112836213,112838497,112850858,112864246,112868783	112751157,112804967,112817815,112830883,112836409,112838697,112850945,112864399,112874987	0.900000
NCI_H460_nuclear_fraction	chr19	46180862	46180879	46180862	-	High_confidence	273	281	1022	48.862395	5.911700	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46158755	46180879	MSTRG.21105.1	-	46158755,46173933,46179485,46180604,46180800	46164651,46174052,46179537,46180689,46180879	0.590998
NCI_H460_nuclear_fraction	chr1	241885069	241885121	241885120	+	RAMPAGE_only	6	6	28	1.338696	3.111757	chr1	241884925	241885232	SINE|Alu|AluY	+	chr1	241879039	241889594	EXO1|ENST00000521202.2	+	241879039,241885313,241889464	241879343,241885507,241889594	0.964286
NCI_H460_nuclear_fraction	chr10	102449836	102449840	102449839	+	High_confidence	7	10	21	1.004022	3.541446	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.809524
NCI_H460_nuclear_fraction	chr7	77411986	77412016	77411986	-	RAMPAGE_only	6	7	21	1.004022	3.272804	chr7	77411896	77412181	SINE|Alu|AluSx	+	chr7	77310750	77416400	GSAP|NM_017439.3	-	77310750,77311840,77312100,77313487,77314369,77320724,77321332,77323646,77326211,77328605,77329332,77330238,77349350,77352943,77353571,77355212,77355554,77360823,77362582,77374069,77375057,77376847,77377285,77381304,77382573,77387359,77396981,77397345,77404558,77406028,77416212	77311449,77311940,77312202,77313549,77314489,77320819,77321403,77323742,77326273,77328637,77329391,77330367,77349404,77353026,77353641,77355430,77355647,77360901,77362660,77374155,77375101,77376907,77377390,77381354,77382643,77387448,77397035,77397415,77404615,77406105,77416400	0.857143
NCI_H460_nuclear_fraction	chr17	82081601	82081665	82081601	-	High_confidence	5	5	25	1.195264	4.213661	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.640000
NCI_H460_nuclear_fraction	chr1	188888405	188888463	188888441	-	High_confidence	34	50	209	9.992408	5.525124	chr1	188888422	188889119	DNA|TcMar-Tigger|MER44D	+	chr1	188869476	188889007	MSTRG.3167.1	-	188869476,188887240	188875882,188889007	0.913876
NCI_H460_nuclear_fraction	chr17	7584862	7584863	7584862	+	High_confidence	4	4	6	0.286863	2.584963	chr17	7584709	7585017	SINE|Alu|AluSq2	+	chr17	7583894	7587938	MPDU1|ENST00000574558.1	+	7583894,7586691,7586898,7587160,7587425	7583965,7586777,7587017,7587271,7587938	0.666667
NCI_H460_nuclear_fraction	chr12	79045597	79045641	79045630	+	High_confidence	4	4	21	1.004022	4.037401	chr12	79039621	79045645	LINE|L1|L1PA2	-	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.666667
NCI_H460_nuclear_fraction	chr8	9188188	9188299	9188203	+	High_confidence	18	18	165	7.888743	6.451814	chr8	9188163	9188460	LINE|L2|L2b	-	chr8	9188275	9202815	MSTRG.37907.14	+	9188275,9189347,9198923,9202498	9188443,9189586,9198991,9202815	0.648485
NCI_H460_nuclear_fraction	chr1	6205508	6205519	6205518	+	High_confidence	8	8	22	1.051832	3.546439	chr1	6205476	6205750	SINE|Alu|AluSz	-	chr1	6205474	6208307	RNF207|ENST00000466994.5	+	6205474,6206195,6206535,6207378	6206101,6206302,6206726,6208307	0.772727
NCI_H460_nuclear_fraction	chr5	150640005	150640051	150640038	+	High_confidence	6	6	26	1.243075	4.209867	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150640357	150650380	MSTRG.32945.6	+	150640357,150647943	150640425,150650380	0.807692
NCI_H460_nuclear_fraction	chr6	165902804	165902827	165902804	-	RAMPAGE_only	1	1	7	0.334674	2.584963	chr6	165902664	165903004	LTR|ERVL-MaLR|MLT1J2	+	chr6	165901819	165924592	PDE10A|ENST00000649362.1	-	165901819,165910807,165924231	165902912,165910932,165924592	0.714286
NCI_H460_nuclear_fraction	chr12	19945469	19945487	19945483	-	RAMPAGE_only	6	7	33	1.577749	4.089552	chr12	19945366	19945519	SINE|Alu|AluJb	+	chr12	19941213	19946735	MSTRG.8346.1	-	19941213,19945349,19946613	19941610,19945525,19946735	0.818182
NCI_H460_nuclear_fraction	chr11	123469402	123469415	123469402	+	RAMPAGE_only	53	58	95	4.542003	4.986573	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123480737	123594838	GRAMD1B|ENST00000633087.1	+	123480737,123577366,123584311,123594081,123594734	123480893,123577577,123584332,123594166,123594838	0.663158
NCI_H460_nuclear_fraction	chr6	24658942	24659029	24658942	-	RAMPAGE_only	23	23	97	4.637625	6.044076	chr6	24658846	24659355	LTR|ERV1|LTR26C	+	chr6	24649978	24666591	TDP2|ENST00000341060.3	-	24649978,24652982,24654411,24657811,24658560,24666118	24651069,24653153,24654530,24657903,24658734,24666591	0.525773
NCI_H460_nuclear_fraction	chr3	11225963	11225999	11225963	+	High_confidence	30	32	170	8.127796	5.685196	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.894118
NCI_H460_nuclear_fraction	chr16	2757786	2757802	2757801	+	High_confidence	5	6	10	0.478106	2.947703	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.800000
NCI_H460_nuclear_fraction	chr10	87878205	87878224	87878205	+	RAMPAGE_only	6	6	11	0.525916	2.663533	chr10	87878075	87878353	SINE|Alu|AluY	-	chr10	87876525	87971730	MSTRG.5147.6	+	87876525,87880305,87925512,87931045,87933012,87952117,87957852,87960893,87965286	87879023,87880438,87925557,87931089,87933251,87952259,87958019,87961118,87971730	1.000000
NCI_H460_nuclear_fraction	chr3	190146784	190146808	190146784	+	RAMPAGE_only	3	3	9	0.430295	3.000000	chr3	190145009	190147904	LTR|ERV1|HERVH-int	+	chr3	190144922	190173687	MSTRG.29462.4	+	190144922,190146769,190151670,190170022,190172818	190145135,190147053,190151714,190170115,190173687	0.555556
NCI_H460_nuclear_fraction	chr7	106272360	106272380	106272379	-	RAMPAGE_only	3	3	7	0.334674	2.521641	chr7	106272347	106272479	SINE|MIR|MIR3	-	chr7	106271864	106284887	NAMPT|ENST00000486949.5	-	106271864,106274945,106277022,106284827	106272658,106275049,106277179,106284887	0.571429
NCI_H460_nuclear_fraction	chr5	75512945	75512946	75512945	+	High_confidence	6	6	9	0.430295	2.947703	chr5	75512845	75513016	SINE|Alu|AluSx1	+	chr5	75512068	75573837	POLK|ENST00000514296.5	+	75512068,75534827,75547009,75552471,75569339,75573737	75512946,75534964,75547157,75552591,75569492,75573837	0.888889
NCI_H460_nuclear_fraction	chr10	122127026	122127027	122127026	+	High_confidence	6	9	9	0.430295	2.641604	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.777778
NCI_H460_nuclear_fraction	chr2	189208287	189208300	189208287	-	RAMPAGE_only	2	2	7	0.334674	2.584963	chr2	189208251	189208349	LINE|L2|L2a	+	chr2	189031895	189180011	COL5A2|ENST00000374866.8	-	189031895,189034915,189036615,189039271,189041585,189042719,189043150,189045178,189045799,189048208,189049346,189050568,189051319,189052171,189052748,189052910,189053423,189053894,189054158,189056972,189057319,189058428,189058848,189060729,189061561,189062864,189063009,189063171,189063979,189064556,189065003,189066389,189066728,189068014,189068225,189068785,189072039,189075392,189078515,189079062,189079977,189080989,189083983,189085159,189085718,189086725,189088694,189092309,189097276,189098726,189100106,189104263,189110224,189179507	189034216,189035155,189036803,189039563,189041693,189042773,189043258,189045232,189045907,189048262,189049454,189050676,189051481,189052225,189052802,189053018,189053477,189053948,189054212,189057026,189057427,189058527,189058893,189060783,189061615,189062918,189063063,189063270,189064033,189064655,189065057,189066497,189066782,189068113,189068270,189068884,189072093,189075437,189078569,189079107,189080031,189081043,189084037,189085213,189085772,189086770,189088772,189092420,189097330,189098759,189100139,189104277,189110449,189180011	0.571429
NCI_H460_nuclear_fraction	chr8	29528668	29528671	29528668	+	RAMPAGE_only	5	6	11	0.525916	2.921928	chr8	29528587	29528733	DNA|hAT-Charlie|MER5A	-	chr8	29527311	29530323	AC084026.2|ENST00000521101.1	+	29527311,29529790	29527420,29530323	0.545455
NCI_H460_nuclear_fraction	chr11	85716651	85716654	85716651	-	RAMPAGE_only	9	9	18	0.860590	3.794653	chr11	85716605	85716654	LINE|L2|L2c	+	chr11	85694287	85715137	SYTL2|ENST00000525702.5	-	85694287,85696182,85697978,85700514,85704857,85707428,85709330,85711112,85714412	85695340,85696388,85698078,85700593,85705028,85707531,85709500,85711232,85715137	0.888889
NCI_H460_nuclear_fraction	chr10	71269996	71269997	71269996	+	RAMPAGE_only	4	4	6	0.286863	2.584963	chr10	71269656	71270067	LINE|L2|L2a	-	chr10	71212926	71302864	UNC5B|ENST00000373192.4	+	71212926,71279820,71284719,71285325,71286688,71287597,71288567,71290914,71291431,71292466,71293404,71293699,71295810,71296577,71297908,71299111	71213064,71280045,71284863,71285429,71286869,71287765,71288732,71291109,71291821,71292554,71293573,71293933,71295960,71296742,71298090,71302864	0.500000
NCI_H460_nuclear_fraction	chr21	8850024	8850025	8850024	+	RAMPAGE_only	7	9	10	0.478106	3.169925	chr21	8850073	8850241	SINE|MIR|MIRb	+	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	0.900000
NCI_H460_nuclear_fraction	chr12	46266488	46266505	46266488	-	High_confidence	10	10	22	1.051832	4.011365	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.681818
NCI_H460_nuclear_fraction	chr4	73721069	73721070	73721069	-	High_confidence	16516	19153	22777	1088.981195	5.903528	chr4	73720899	73721266	LTR|ERVL-MaLR|THE1B	-	chr4	73665544	73721112	MSTRG.30284.1	-	73665544,73706336,73720983	73670903,73706575,73721112	0.811213
NCI_H460_nuclear_fraction	chr5	93563832	93563844	93563843	-	RAMPAGE_only	3	3	8	0.382485	2.807355	chr5	93563820	93564150	SINE|Alu|AluY	+	chr5	93409358	93570793	NR2F1-AS1|ENST00000607797.5	-	93409358,93553760,93554873,93563363,93569889	93411509,93553863,93554995,93563463,93570793	0.500000
NCI_H460_nuclear_fraction	chr18	80148045	80148049	80148048	+	High_confidence	103	110	151	7.219395	6.050626	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.854305
NCI_H460_nuclear_fraction	chr21	33931121	33931194	33931146	+	High_confidence	14	16	88	4.207330	5.246241	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.602273
NCI_H460_nuclear_fraction	chr4	168442377	168442409	168442408	-	RAMPAGE_only	13	17	42	2.008044	3.630343	chr4	168441989	168448038	LINE|L1|L1PA2	+	chr4	168396098	168456059	DDX60L|ENST00000505863.1	-	168396098,168400825,168403981,168405949,168406601,168415407,168415656,168416681,168420260,168421759,168422523,168423607,168427069,168430477,168432454,168433009,168441336,168448637,168453123,168456038	168396124,168400978,168404106,168406078,168406706,168415517,168415799,168416797,168420380,168421909,168422670,168423774,168427322,168430638,168432570,168433115,168441492,168448779,168453282,168456059	0.833333
NCI_H460_nuclear_fraction	chr10	115435128	115435155	115435154	+	RAMPAGE_only	12	12	43	2.055854	4.090400	chr10	115435029	115435292	SINE|Alu|AluY	-	chr10	115093858	115946742	ATRNL1|ENST00000650603.1	+	115093858,115120184,115121698,115127592,115129326,115160039,115165557,115171036,115215696,115241570,115265192,115266796,115268325,115281354,115286215,115300033,115301854,115315517,115334281,115394658,115426249,115461940,115467173,115469171,115519262,115549457,115727247,115847876,115931527,115944657	115094043,115120268,115121812,115127721,115129535,115160214,115165645,115171292,115215880,115241725,115265277,115267005,115268444,115281487,115286397,115300247,115302043,115315736,115334419,115394752,115426302,115462035,115467252,115469329,115519324,115549536,115727355,115847991,115931653,115946742	0.720930
NCI_H460_nuclear_fraction	chr4	168558410	168558475	168558423	-	High_confidence	3	3	19	0.908401	4.169925	chr4	168557525	168558644	LTR|ERV1|LTR78	-	chr4	168490350	168558610	MSTRG.31132.19	-	168490350,168492665,168537640,168558506	168490450,168492885,168537786,168558610	0.578947
NCI_H460_nuclear_fraction	chr4	138252388	138252407	138252388	-	RAMPAGE_only	4	4	14	0.669348	3.378783	chr4	138252132	138252402	SINE|Alu|AluSx1	-	chr4	138164093	138242349	SLC7A11|NM_014331.3	-	138164093,138179216,138180640,138182296,138183201,138185120,138214584,138219265,138223198,138232266,138236324,138241792	138172017,138179394,138180790,138182393,138183305,138185244,138214629,138219365,138223324,138232382,138236451,138242349	0.642857
NCI_H460_nuclear_fraction	chr7	22707055	22707135	22707124	-	High_confidence	13	13	116	5.546025	5.988690	chr7	22703805	22707656	LTR|ERV1|HERVH-int	+	chr7	22650493	22707116	MSTRG.35750.11	-	22650493,22652945,22705626,22706683	22651153,22653414,22705742,22707116	0.706897
NCI_H460_nuclear_fraction	chr4	174778838	174778864	174778838	-	RAMPAGE_only	2	2	8	0.382485	2.521641	chr4	174778462	174784478	LINE|L1|L1PA2	+	chr4	174722623	174728698	GLRA3|ENST00000436738.1	-	174722623,174728474	174722986,174728698	0.750000
NCI_H460_nuclear_fraction	chr12	54187904	54187905	54187904	-	High_confidence	7	8	10	0.478106	2.947703	chr12	54187852	54187993	LINE|L2|L2c	-	chr12	54181484	54187906	SMUG1|ENST00000505662.1	-	54181484,54183764,54187818	54182623,54183959,54187906	0.500000
NCI_H460_nuclear_fraction	chr4	101033949	101033971	101033970	-	RAMPAGE_only	5	7	11	0.525916	2.721928	chr4	101033905	101034635	LINE|L2|L2a	+	chr4	101025317	101346842	PPP3CA|ENST00000507176.5	-	101025317,101029165,101032266,101040481,101061086,101063231,101080531,101083185,101093775,101098366,101099610,101108953,101346738	101026061,101029195,101032364,101040566,101061161,101063357,101080626,101083263,101093915,101098512,101099722,101109078,101346842	0.636364
NCI_H460_nuclear_fraction	chr8	75324289	75324381	75324331	-	RAMPAGE_only	116	117	597	28.542906	7.096445	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223116	75278889	CASC9|NR_103849.2	-	75223116,75278712	75224358,75278889	0.636516
NCI_H460_nuclear_fraction	chr1	197178649	197178707	197178706	-	High_confidence	4	4	18	0.860590	3.836592	chr1	197178615	197178732	LINE|L2|L2	+	chr1	197153679	197179109	MSTRG.3259.1	-	197153679,197172159,197175009,197176563,197178416,197178962	197160014,197172248,197175115,197176670,197178896,197179109	1.000000
NCI_H460_nuclear_fraction	chr9	111642927	111642935	111642927	+	RAMPAGE_only	2	2	8	0.382485	2.807355	chr9	111642927	111643241	DNA?|DNA?|UCON74	+	chr9	111631359	111654345	DNAJC25|ENST00000463589.5	+	111631359,111642838,111647044,111649452,111653099	111631743,111643094,111647259,111649923,111654345	0.875000
NCI_H460_nuclear_fraction	chrX	23883680	23883708	23883697	-	High_confidence	2	2	9	0.430295	2.750000	chrX	23883103	23883918	LTR|ERV1|LTR1A1	+	chrX	23856355	23884019	APOO|ENST00000633372.1	-	23856355,23858641,23868592,23874402,23878914,23880844,23883358	23856382,23858733,23868688,23874457,23879034,23880952,23884019	0.888889
NCI_H460_nuclear_fraction	chr4	39515085	39515086	39515085	-	RAMPAGE_only	5	5	8	0.382485	2.750000	chr4	39514983	39515137	SINE|Alu|AluJb	-	chr4	39498787	39526557	UGDH|ENST00000506179.5	-	39498787,39503874,39504416,39505236,39505617,39508565,39509759,39510352,39510660,39514082,39521350,39526383	39500253,39503985,39504508,39505370,39505748,39508660,39509907,39510550,39510861,39514184,39521519,39526557	0.500000
NCI_H460_nuclear_fraction	chr2	241235121	241235133	241235121	-	RAMPAGE_only	4	4	8	0.382485	2.807355	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241229223	241249396	MSTRG.24721.5	-	241229223,241229832,241230152,241230758,241233819,241235120,241235489,241236614,241239601,241239900,241242459,241246751,241247055,241248002,241248243,241249357	241229687,241229961,241230269,241230944,241233963,241235255,241235594,241236769,241239820,241240122,241242678,241246883,241247142,241248116,241248348,241249396	0.500000
NCI_H460_nuclear_fraction	chr1	67791722	67791754	67791731	-	High_confidence	80	81	312	14.916896	6.870302	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701475	67791746	MSTRG.1606.2	-	67701475,67707593,67777457,67791642	67705576,67707712,67777507,67791746	0.564103
NCI_H460_nuclear_fraction	chr2	218398232	218398233	218398232	+	High_confidence	12	12	13	0.621537	2.918296	chr2	218398216	218398343	SINE|MIR|MIRb	+	chr2	218398123	218405941	MSTRG.24334.1	+	218398123,218401563,218402113,218402348,218403034,218403231,218404296	218400157,218401712,218402215,218402405,218403127,218403417,218405941	0.923077
NCI_H460_nuclear_fraction	chr18	23576944	23576948	23576947	-	High_confidence	8	8	14	0.669348	3.392747	chr18	23576532	23578195	LTR|ERV1|LTR12C	-	chr18	23573451	23576947	NPC1|ENST00000587223.1	-	23573451,23576480	23573574,23576947	0.785714
NCI_H460_nuclear_fraction	chr16	30354709	30354710	30354709	-	High_confidence	8	8	10	0.478106	3.321928	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	1.000000
NCI_H460_nuclear_fraction	chr6	2989956	2989957	2989956	+	RAMPAGE_only	7	7	8	0.382485	2.521641	chr6	2989586	2990082	LTR|ERV1|LTR73	-	chr6	2988647	2991173	LINC01011|ENST00000605901.1	+	2988647,2989527,2989868	2988709,2989733,2991173	0.875000
NCI_H460_nuclear_fraction	chr1	67792079	67792142	67792105	-	High_confidence	10	10	60	2.868634	5.551969	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701475	67791746	MSTRG.1606.2	-	67701475,67707593,67777457,67791642	67705576,67707712,67777507,67791746	0.600000
NCI_H460_nuclear_fraction	chr8	66926449	66926466	66926450	-	High_confidence	25	30	75	3.585792	5.249125	chr8	66926412	66926708	SINE|Alu|AluY	-	chr8	66922017	66926398	SNHG6|ENST00000520619.1	-	66922017,66922323,66922613,66926197	66922114,66922392,66922725,66926398	0.733333
NCI_H460_nuclear_fraction	chr17	19749351	19749352	19749351	-	High_confidence	13	14	17	0.812780	3.327820	chr17	19749293	19749417	LINE|L2|L2a	+	chr17	19743231	19748943	ALDH3A1|ENST00000574162.5	-	19743231,19744967,19747901,19748798	19743463,19745134,19748216,19748943	0.882353
NCI_H460_nuclear_fraction	chr16	20736862	20736902	20736882	-	RAMPAGE_only	4	4	18	0.860590	3.263933	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	0.944444
NCI_H460_nuclear_fraction	chr8	128418166	128418391	128418381	-	RAMPAGE_only	11	12	175	8.366849	5.855557	chr8	128418119	128418436	SINE|Alu|AluSx3	+	chr8	128405268	128561126	MSTRG.39221.2	-	128405268,128406775,128414213,128414540,128416117,128421742,128423500,128427657,128561069	128406633,128406846,128414408,128416010,128420823,128421814,128423593,128428384,128561126	1.000000
NCI_H460_nuclear_fraction	chr7	106285258	106285285	106285258	+	High_confidence	4	4	13	0.621537	3.700440	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106285479	106286326	AC007032.1|ENST00000609281.1	+	106285479	106286326	0.923077
NCI_H460_nuclear_fraction	chr17	8384033	8384062	8384033	-	High_confidence	2	2	8	0.382485	2.500000	chr17	8384033	8384050	SINE|Alu|AluSq	-	chr17	8377525	8383720	MSTRG.16488.12	-	8377525,8379795,8382142,8383655	8377692,8379936,8382315,8383720	0.875000
NCI_H460_nuclear_fraction	chr9	100429549	100429604	100429549	+	High_confidence	12	12	44	2.103665	4.814783	chr9	100429405	100429575	LINE|L2|L2b	-	chr9	100429513	100451734	MSANTD3|NM_001198806.1	+	100429513,100441905,100450556	100429662,100442356,100451734	0.659091
NCI_H460_nuclear_fraction	chr4	159274059	159274066	159274059	+	RAMPAGE_only	4	4	8	0.382485	2.500000	chr4	159273792	159274090	SINE|Alu|AluSx	-	chr4	159267845	159360150	RAPGEF2|NM_014247.2	+	159267845,159304341,159314590,159322346,159323458,159329857,159330333,159331430,159331629,159331925,159332450,159338310,159339113,159341563,159342978,159343280,159344035,159345105,159346788,159350136,159352684,159353486,159355852,159358113	159268215,159304473,159314768,159322483,159323617,159330010,159330498,159331538,159331833,159332034,159332697,159338468,159339354,159341947,159343190,159343404,159344059,159345329,159346998,159350289,159352910,159354046,159356158,159360150	0.750000
NCI_H460_nuclear_fraction	chr18	7047112	7047123	7047122	-	RAMPAGE_only	38	42	74	3.537982	4.990010	chr18	7047041	7047341	SINE|Alu|AluSc8	-	chr18	6941947	7117759	LAMA1|ENST00000579014.5	-	6941947,6943179,6947162,6948402,6949100,6950781,6955352,6956635,6958476,6959340,6961585,6961944,6964661,6965287,6966146,6971856,6973056,6974902,6975936,6977726,6978195,6980520,6982496,6983098,6985236,6985526,6986136,6992560,6993640,6995356,6997741,6999444,6999910,7002263,7007138,7008487,7009238,7010199,7011299,7011994,7013814,7015721,7016490,7017277,7023163,7024379,7025978,7032065,7032983,7034478,7035986,7037577,7038809,7040075,7042144,7044721,7046277,7049077,7050693,7079974,7080286,7117659	6942239,6943402,6947296,6948556,6949259,6950971,6955465,6956765,6958662,6959492,6961759,6962059,6964803,6965432,6966297,6971981,6973207,6975036,6976080,6977881,6978378,6980637,6982590,6983234,6985400,6985643,6986347,6992720,6993752,6995446,6997884,6999638,6999997,7002385,7007276,7008608,7009366,7010385,7011479,7012138,7014051,7015858,7016671,7017384,7023375,7024466,7026106,7032176,7033095,7034690,7036088,7037751,7038950,7040236,7043405,7044839,7046367,7049257,7050936,7080087,7080457,7117759	0.648649
NCI_H460_nuclear_fraction	chr4	102431228	102431248	102431237	-	High_confidence	13	13	75	3.585792	5.456814	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.573333
NCI_H460_nuclear_fraction	chr13	64075724	64075769	64075750	-	High_confidence	31	45	247	11.809209	5.487605	chr13	64074921	64075752	LTR|ERV1|MER52A	-	chr13	63986370	64076011	LINC00355|ENST00000456627.1	-	63986370,63990095,64002384,64003347,64034346,64075241	63987039,63990200,64002409,64003465,64034537,64076011	0.813765
NCI_H460_nuclear_fraction	chr6	26956513	26956612	26956577	-	High_confidence	5	5	57	2.725202	5.043073	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.561404
NCI_H460_nuclear_fraction	chr2	229586868	229586903	229586868	-	RAMPAGE_only	10	10	22	1.051832	4.106603	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229357628	229714558	DNER|ENST00000341772.4	-	229357628,229366872,229388264,229407231,229418107,229447315,229477139,229512782,229546946,229585857,229588393,229591579,229714147	229358651,229367119,229388396,229407345,229418230,229447540,229477253,229512936,229547092,229586024,229588488,229591888,229714558	0.818182
NCI_H460_nuclear_fraction	chrX	68216892	68216986	68216985	-	RAMPAGE_only	7	7	32	1.529938	3.739572	chrX	68216915	68222939	LINE|L1|L1PA2	+	chrX	68192741	68210268	OPHN1|ENST00000467444.1	-	68192741,68193889,68194464,68197185,68201618,68206572,68210152	68192993,68193952,68194498,68197264,68201710,68206673,68210268	0.625000
NCI_H460_nuclear_fraction	chr9	65715005	65715047	65715017	+	High_confidence	15	15	114	5.450404	5.636503	chr9	65709351	65715424	LINE|L1|L1PA3	-	chr9	65715031	65733674	MSTRG.40075.30	+	65715031,65720040,65731629,65731801,65732992,65733509	65715164,65720092,65731698,65731867,65733122,65733674	0.745614
NCI_H460_nuclear_fraction	chr17	41996310	41996330	41996322	-	RAMPAGE_only	3	3	8	0.382485	2.521641	chr17	41996098	41996284	SINE|MIR|MIRc	-	chr17	41981983	41988873	DNAJC7|ENST00000586335.1	-	41981983,41982254,41983562,41987594,41987818,41988731	41982007,41982401,41983636,41987694,41987910,41988873	0.625000
NCI_H460_nuclear_fraction	chr17	31923501	31923529	31923527	+	RAMPAGE_only	3	4	11	0.525916	3.321928	chr17	31923320	31923567	SINE|Alu|AluY	+	chr17	31937009	32001045	SUZ12|NM_015355.3	+	31937009,31940285,31940421,31947616,31966146,31973145,31975481,31976520,31982998,31988319,31993241,31993864,31994563,31995563,31996797,31998657	31937520,31940332,31940486,31947685,31966196,31973231,31975713,31976614,31983104,31988497,31993333,31994008,31994721,31995762,31996877,32001045	0.727273
NCI_H460_nuclear_fraction	chr1	219092217	219092294	219092293	-	High_confidence	150	223	751	35.905733	8.099178	chr1	219088450	219094763	LINE|L1|L1MA4	+	chr1	219083127	219092354	MSTRG.3561.3	-	219083127,219088219	219086660,219092354	0.725699
NCI_H460_nuclear_fraction	chr5	27472283	27472304	27472283	+	High_confidence	688	744	1884	90.075101	7.015716	chr5	27472073	27472487	LTR|ERV1|MER61C	+	chr5	27472291	27496401	MSTRG.31505.1	+	27472291,27475534,27484925,27485580,27487207	27472519,27477801,27485462,27487160,27496401	0.693737
NCI_H460_nuclear_fraction	chr2	86888248	86888259	86888248	+	RAMPAGE_only	13	14	25	1.195264	4.213661	chr2	86888135	86888443	SINE|Alu|AluY	-	chr2	86871300	86912978	ANAPC1P1|ENST00000426186.2	+	86871300,86873186,86878516,86878772,86879468,86883355,86886583,86887772,86889066,86893280,86894791,86895001,86900797,86903837,86904504,86907828,86912902	86871543,86873348,86878568,86878873,86879551,86883429,86886729,86887993,86889276,86893375,86894882,86895067,86900932,86903978,86904565,86908016,86912978	0.680000
NCI_H460_nuclear_fraction	chr6	73802813	73802825	73802813	+	RAMPAGE_only	7	7	19	0.908401	3.419382	chr6	73802695	73802998	SINE|Alu|AluSq2	-	chr6	73780330	73828313	MSTRG.34534.5	+	73780330,73781258,73782613,73783706,73785363,73787233,73788467,73792625,73803219,73806843,73809983,73810991,73812204,73814980,73818387,73820460,73823457	73780498,73781319,73782755,73783824,73785477,73787452,73788612,73792802,73803301,73808248,73810174,73811147,73812270,73815123,73818535,73820563,73828313	0.842105
NCI_H460_nuclear_fraction	chr7	22726001	22726014	22726013	+	High_confidence	4	5	15	0.717158	3.664498	chr7	22725923	22726198	LTR|Gypsy?|LTR88b	+	chr7	22725883	22732002	IL6|ENST00000404625.5	+	22725883,22727178,22727443,22728692,22729513,22731405	22726258,22727281,22727634,22728806,22729660,22732002	0.666667
NCI_H460_nuclear_fraction	chr5	59092980	59092984	59092983	-	RAMPAGE_only	5	5	10	0.478106	3.321928	chr5	59092926	59093513	LINE|L1|HAL1	+	chr5	58974654	59039515	PDE4D|ENST00000515011.5	-	58974654,58975656,58976349,58977190,58988492,58989754,58990803,58991831,58993371,59038858	58975080,58975839,58976472,58977345,58988592,58989919,58990902,58992004,58993465,59039515	0.600000
NCI_H460_nuclear_fraction	chr14	103136311	103136457	103136360	+	RAMPAGE_only	4	4	51	2.438339	3.387976	chr14	103136230	103136520	LTR|ERVL-MaLR|MLT1D	-	chr14	103132747	103136682	TNFAIP2|ENST00000559255.1	+	103132747,103133361,103133681,103135218,103135808	103132872,103133517,103133803,103135351,103136682	0.627451
NCI_H460_nuclear_fraction	chr3	128104789	128104857	128104856	-	RAMPAGE_only	4	6	22	1.051832	4.277613	chr3	128104760	128104822	LINE|CR1|L3	-	chr3	128081181	128100744	RUVBL1|ENST00000478892.1	-	128081181,128082482,128087705,128097299,128098881,128100594	128081409,128082574,128087844,128097498,128098945,128100744	0.863636
NCI_H460_nuclear_fraction	chr7	158433356	158433368	158433367	+	High_confidence	109	112	340	16.255591	6.966054	chr7	158433347	158433470	LINE|L1|L1MEg	-	chr7	158433050	158451525	MSTRG.37761.3	+	158433050,158443149,158444243,158445778,158450423	158433573,158443349,158445549,158448271,158451525	0.564706
NCI_H460_nuclear_fraction	chr4	81153866	81153916	81153866	-	High_confidence	6	6	21	1.004022	3.984184	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81087369	81153732	PRKG2|ENST00000545647.5	-	81087369,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153429,81153643	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153555,81153732	0.666667
NCI_H460_nuclear_fraction	chr2	233357066	233357098	233357066	+	RAMPAGE_only	10	10	25	1.195264	4.103465	chr2	233356905	233357200	LTR|ERVL|LTR33A_	-	chr2	233354571	233472096	MSTRG.24576.4	+	233354571,233388256,233390402,233434379,233434768,233435817,233436315,233437376,233438216,233441886,233445622,233446711,233448086,233448275,233449102,233449981,233450921,233451963,233454762,233456898,233457220,233458283,233459756,233460193,233462347,233462642,233464163,233467085,233468422,233469370,233470843	233354674,233388367,233390483,233434484,233434901,233435924,233436441,233437479,233438379,233441995,233445762,233446796,233448181,233448375,233449376,233450131,233451050,233452060,233454873,233456995,233457328,233458397,233459891,233460345,233462459,233462735,233464283,233467203,233468553,233470792,233472096	0.640000
NCI_H460_nuclear_fraction	chr14	102235568	102235603	102235602	-	High_confidence	7	8	16	0.764969	2.923231	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102229577	102235569	MOK|ENST00000520252.5	-	102229577,102231706,102232534,102233687,102235364	102229657,102231821,102232671,102233789,102235569	0.875000
NCI_H460_nuclear_fraction	chr1	148279251	148279284	148279251	+	High_confidence	74	75	532	25.435220	7.207888	chr1	148279033	148279814	LINE|L1|L1MEc	+	chr1	148279256	148293675	MSTRG.2328.3	+	148279256,148287689,148292179	148279531,148289311,148293675	0.501880
NCI_H460_nuclear_fraction	chr12	79045181	79045260	79045259	+	High_confidence	79	86	699	33.419584	7.631950	chr12	79039621	79045645	LINE|L1|L1PA2	-	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.753934
NCI_H460_nuclear_fraction	chr10	125824919	125824934	125824921	+	RAMPAGE_only	2	3	10	0.478106	3.169925	chr10	125824830	125824934	LINE|L2|L2b	-	chr10	125823545	125836553	BCCIP|ENST00000278100.10	+	125823545,125826590,125827557,125830561,125831419,125833771,125836103	125823722,125826665,125827638,125830651,125831607,125833946,125836553	0.800000
NCI_H460_nuclear_fraction	chr20	25296901	25296958	25296941	+	RAMPAGE_only	3	4	18	0.860590	3.947703	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	1.000000
NCI_H460_nuclear_fraction	chr20	18794054	18794086	18794077	+	High_confidence	38	39	105	5.020109	4.824384	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.990476
NCI_H460_nuclear_fraction	chr1	188822729	188822755	188822729	-	High_confidence	2	2	7	0.334674	2.584963	chr1	188822207	188822962	LINE|L1|L1M4b	+	chr1	188741890	188822566	MSTRG.3140.5	-	188741890,188814464,188822181	188743561,188814611,188822566	0.571429
NCI_H460_nuclear_fraction	chr1	173864992	173865170	173864992	-	High_confidence	3	6	65	3.107687	5.295009	chr1	173864936	173865210	SINE|Alu|AluSz	+	chr1	173863903	173864906	GAS5|ENST00000422207.5	-	173863903,173864256,173864483	173864075,173864304,173864906	0.769231
NCI_H460_nuclear_fraction	chr2	200888587	200888629	200888607	-	High_confidence	8	8	45	2.151475	4.106937	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.688889
NCI_H460_nuclear_fraction	chr10	5018065	5018090	5018089	-	High_confidence	3	3	8	0.382485	2.500000	chr10	5017765	5018153	LTR|ERVL-MaLR|MSTA	-	chr10	4987774	5018033	AKR1C2|NM_205845.2	-	4987774,4991830,4995318,4995755,4998624,4999199,5000549,5001513,5003751,5017899	4990038,4991913,4995484,4995865,4998747,4999277,5000666,5001681,5004014,5018033	0.875000
NCI_H460_nuclear_fraction	chr3	111911611	111911613	111911611	+	High_confidence	6	10	12	0.573727	3.084963	chr3	111911655	111911757	DNA|hAT-Ac|OldhAT1	+	chr3	111911609	111976465	PHLDB2|ENST00000495180.1	+	111911609,111913318,111919071,111920281,111932268,111939474,111940534,111945267,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111911724,111913702,111919215,111920419,111932397,111939630,111940645,111945357,111954029,111962312,111966703,111967824,111969909,111973817,111976465	0.750000
NCI_H460_nuclear_fraction	chr10	34699072	34699141	34699092	-	RAMPAGE_only	5	6	45	2.151475	5.169548	chr10	34699079	34699154	DNA|TcMar-Tigger|Tigger20a	-	chr10	34110906	34815106	MSTRG.4502.10	-	34110906,34119612,34131462,34269656,34284134,34317106,34331116,34336198,34337277,34341626,34347964,34359146,34360070,34372497,34374873,34377966,34382539,34384128,34399329,34401825,34450316,34470084,34516978,34696317,34814875	34111562,34119740,34131583,34269899,34284245,34317338,34331344,34336243,34337426,34341816,34348115,34359317,34360259,34372536,34375002,34378106,34382922,34384254,34399413,34401917,34450448,34470263,34517159,34696419,34815106	0.600000
NCI_H460_nuclear_fraction	chr15	69423296	69423313	69423296	+	High_confidence	3	3	10	0.478106	2.521928	chr15	69423345	69423466	SINE|MIR|MIRb	+	chr15	69422908	69436259	KIF23|ENST00000559283.1	+	69422908,69426069,69426335,69429110,69435482,69435651,69436148	69423329,69426182,69426457,69429213,69435562,69435782,69436259	1.000000
NCI_H460_nuclear_fraction	chr10	132331658	132331674	132331673	-	High_confidence	2	2	7	0.334674	2.584963	chr10	132331498	132331624	LTR|ERVL|LTR16E1	-	chr10	132330280	132331837	STK32C|ENST00000456004.1	-	132330280,132331435	132330485,132331837	0.571429
NCI_H460_nuclear_fraction	chr9	104763726	104763741	104763732	+	High_confidence	3	3	10	0.478106	3.321928	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NM_018376.3	+	104763740,104766324,104768862,104770848,104772821,104772996	104764300,104766535,104769021,104770998,104772908,104777764	0.900000
NCI_H460_nuclear_fraction	chr1	222715266	222715267	222715266	+	RAMPAGE_only	15	15	15	0.717158	3.056565	chr1	222715165	222715305	DNA|hAT-Charlie|MER5A1	+	chr1	222713400	222727209	BROX|ENST00000489191.1	+	222713400,222715144,222718924,222719262,222724091,222725449,222727167	222713416,222715269,222719031,222719359,222724164,222725555,222727209	0.933333
NCI_H460_nuclear_fraction	chr1	6208681	6208682	6208681	-	High_confidence	81	83	83	3.968277	3.718421	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.939759
NCI_H460_nuclear_fraction	chr18	68790390	68790469	68790468	+	RAMPAGE_only	15	17	121	5.785078	5.706596	chr18	68784834	68790853	LINE|L1|L1PA2	-	chr18	68798079	69055189	CCDC102B|NM_024781.2	+	68798079,68836748,68838705,68846312,68874668,68897218,69010933,69054029	68798181,68837369,68838926,68846421,68874785,68897428,69011104,69055189	0.768595
NCI_H460_nuclear_fraction	chr14	56244552	56244594	56244558	+	RAMPAGE_only	4	7	29	1.386506	4.532665	chr14	56243608	56244588	DNA|hAT-Charlie|Charlie25	+	chr14	56118374	56301526	PELI2|ENST00000267460.8	+	56118374,56178334,56279675,56288436,56290267,56296599	56118737,56178464,56279777,56288634,56290456,56301526	0.551724
NCI_H460_nuclear_fraction	chr11	93734841	93734883	93734882	-	High_confidence	5	5	17	0.812780	3.454822	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730282	93734661	TAF1D|ENST00000525928.5	-	93730282,93730676,93731149,93731752,93732243,93733086,93733349	93730447,93730712,93731216,93731799,93732291,93733121,93734661	0.823529
NCI_H460_nuclear_fraction	chr1	112936000	112936034	112936000	-	High_confidence	7	7	20	0.956211	3.921928	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	1.000000
NCI_H460_nuclear_fraction	chr12	104287636	104287679	104287641	+	High_confidence	5	7	26	1.243075	4.469670	chr12	104287561	104287720	SINE|MIR|MIRc	-	chr12	104287367	104348644	TXNRD1|ENST00000524698.5	+	104287367,104288930,104311289,104313244,104315776,104318912,104319469,104321090,104325336,104326346,104327514,104331533,104334236,104339138,104348352	104287431,104289040,104311412,104313317,104315896,104319055,104319585,104321316,104325429,104326423,104327671,104331641,104334332,104339273,104348644	0.538462
NCI_H460_nuclear_fraction	chr5	59092935	59092958	59092935	-	RAMPAGE_only	6	7	13	0.621537	2.931209	chr5	59092926	59093513	LINE|L1|HAL1	+	chr5	58974654	59039515	PDE4D|ENST00000515011.5	-	58974654,58975656,58976349,58977190,58988492,58989754,58990803,58991831,58993371,59038858	58975080,58975839,58976472,58977345,58988592,58989919,58990902,58992004,58993465,59039515	0.769231
NCI_H460_nuclear_fraction	chr7	101308299	101308325	101308324	+	High_confidence	223	297	1187	56.751138	7.757187	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.816344
NCI_H460_nuclear_fraction	chr4_GL000008v2_random	170343	170368	170347	-	RAMPAGE_only	21	23	66	3.155497	5.180462	chr4_GL000008v2_random	170280	170685	LTR|ERV1|MER61C	+	chr4_GL000008v2_random	161986	178171	ANKRD20A12P|NR_046228.1	-	161986,163784,164602,175824,177526	162439,163998,164884,175974,178171	0.863636
NCI_H460_nuclear_fraction	chr10	93431448	93431504	93431448	-	RAMPAGE_only	2	2	20	0.956211	3.892407	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.950000
NCI_H460_nuclear_fraction	chr1	246689762	246689774	246689773	+	High_confidence	9	9	19	0.908401	3.683542	chr1	246689571	246689829	LTR|ERVL|LTR41	+	chr1	246690046	246691821	AL591848.2|ENST00000442712.1	+	246690046,246691467	246690214,246691821	0.947368
NCI_H460_nuclear_fraction	chr12	109881241	109881242	109881241	-	High_confidence	12	12	14	0.669348	3.334679	chr12	109881109	109881661	LTR|ERV1|MER51B	+	chr12	109852260	109881404	MSTRG.9633.2	-	109852260,109855618,109857525,109858682,109880909	109852737,109855769,109857659,109858741,109881404	0.857143
NCI_H460_nuclear_fraction	chr2	9489337	9489479	9489342	-	RAMPAGE_only	9	9	50	2.390528	3.926306	chr2	9489263	9489382	SINE|Alu|AluY	-	chr2	9488485	9505318	MSTRG.21745.1	-	9488485,9492897,9493746,9494636,9497113,9502172,9505165	9491151,9492986,9493825,9494767,9497248,9502276,9505318	0.940000
NCI_H460_nuclear_fraction	chr2	142812332	142812344	142812343	+	High_confidence	78	79	225	10.757377	6.573642	chr2	142812303	142812784	LINE|L1|L1PA16	-	chr2	142812128	143053999	MSTRG.23438.1	+	142812128,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142812388,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143053999	0.706667
NCI_H460_nuclear_fraction	chr21	29193399	29193460	29193459	+	High_confidence	184	199	636	30.407518	4.764582	chr21	29193019	29193674	LTR|ERV1|MER50B	+	chr21	29193493	29288205	LINC00189|NR_027072.2	+	29193493,29287983	29194260,29288205	0.974843
NCI_H460_nuclear_fraction	chr11	83692008	83692026	83692008	+	RAMPAGE_only	3	3	11	0.525916	2.663533	chr11	83691943	83692136	SINE|MIR|MIRb	-	chr11	83645729	83725390	AP002370.2|ENST00000533669.5	+	83645729,83647503,83684448,83692020,83692928,83693731,83720829,83725191	83645837,83647594,83684525,83692075,83693071,83693810,83720985,83725390	1.000000
NCI_H460_nuclear_fraction	chr2	55618850	55618904	55618850	-	High_confidence	7	8	19	0.908401	3.932138	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55577910	55618880	MSTRG.22355.8	-	55577910,55579678,55581566,55585050,55586617,55588878,55591504,55598415,55603977,55615450,55617143,55618065	55578342,55579781,55581698,55585167,55586734,55588956,55591695,55599039,55604076,55615506,55617978,55618880	1.000000
NCI_H460_nuclear_fraction	chr18	7924109	7924151	7924141	+	RAMPAGE_only	13	14	77	3.681413	4.981077	chr18	7924016	7924284	LTR|ERV1|MER31-int	-	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.766234
NCI_H460_nuclear_fraction	chr1	15341560	15341569	15341560	+	High_confidence	4	4	12	0.573727	3.084963	chr1	15341406	15341604	SINE|MIR|MIR	-	chr1	15341760	15384558	FHAD1|ENST00000444385.5	+	15341760,15345082,15345415,15352876,15358109,15360477,15362641,15365826,15367462,15369369,15374501,15375602,15380700,15381230,15382027,15383155	15341888,15345190,15345523,15352984,15358283,15360703,15362726,15365933,15367622,15369502,15374631,15375730,15380796,15381451,15382193,15384558	0.916667
NCI_H460_nuclear_fraction	chr15	101626893	101626912	101626893	-	RAMPAGE_only	7	9	32	1.529938	4.452820	chr15	101626450	101632475	LINE|L1|L1PA2	+	chr15	101621643	101633697	TM2D3|ENST00000560883.1	-	101621643,101626447,101632942,101633142	101621755,101626563,101633026,101633697	0.500000
NCI_H460_nuclear_fraction	chr1	155768498	155768527	155768526	-	High_confidence	6	6	16	0.764969	3.875000	chr1	155768329	155768627	SINE|Alu|AluY	+	chr1	155750331	155768220	MSTRG.2666.7	-	155750331,155751766,155751959,155753203,155754374,155756957,155757179,155757890,155760443,155762189,155763311,155764999,155767424,155768177	155750733,155751869,155752587,155753414,155754513,155757077,155757323,155758034,155760641,155762374,155763564,155766709,155767541,155768220	0.750000
NCI_H460_nuclear_fraction	chr4	41360083	41360117	41360116	+	High_confidence	10	10	34	1.625559	4.536670	chr4	41360058	41360135	LINE|L2|L2a	+	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.911765
NCI_H460_nuclear_fraction	chr3	190122036	190122080	190122074	-	High_confidence	10	10	50	2.390528	4.709275	chr3	190121809	190122109	SINE|Alu|AluSx	+	chr3	189988914	190121678	P3H2|ENST00000426003.1	-	189988914,189994093,189995289,190121536	189989038,189994283,189995442,190121678	0.720000
NCI_H460_nuclear_fraction	chr16	2769847	2769878	2769877	+	High_confidence	4	4	15	0.717158	3.773557	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2770934	SRRM2|ENST00000574866.1	+	2769894,2770351,2770603,2770857	2770227,2770465,2770717,2770934	0.800000
NCI_H460_nuclear_fraction	chrX	131579054	131579170	131579122	-	High_confidence	14	15	113	5.402594	5.111191	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131363743	131579126	MSTRG.42409.9	-	131363743,131368951,131389016,131399573,131578667	131364926,131369052,131389148,131399704,131579126	0.610619
NCI_H460_nuclear_fraction	chr3	151766780	151766781	151766780	+	High_confidence	683	863	937	44.798498	7.819849	chr3	151766184	151766973	LINE|L1|L1MC3	-	chr3	151766774	151803925	MSTRG.29059.2	+	151766774,151770507,151783831,151785481,151796289,151796759,151797117,151797445,151803705	151766854,151770611,151785421,151796003,151796375,151796837,151797179,151797547,151803925	0.561366
NCI_H460_nuclear_fraction	chr3	190146865	190146894	190146893	+	RAMPAGE_only	5	5	17	0.812780	3.452820	chr3	190145009	190147904	LTR|ERV1|HERVH-int	+	chr3	190144922	190173687	MSTRG.29462.4	+	190144922,190146769,190151670,190170022,190172818	190145135,190147053,190151714,190170115,190173687	0.823529
NCI_H460_nuclear_fraction	chr13	43053919	43053972	43053971	+	RAMPAGE_only	5	5	25	1.195264	3.454987	chr13	43052716	43054750	LINE|L1|L1PB1	-	chr13	43060094	43109833	MSTRG.10370.3	+	43060094,43065685,43068929,43078611,43085767,43107177	43062295,43065737,43069003,43078688,43085838,43109833	0.680000
NCI_H460_nuclear_fraction	chr4	119279669	119279743	119279742	+	RAMPAGE_only	8	8	46	2.199286	4.728197	chr4	119274113	119280127	LINE|L1|L1PA2	-	chr4	119239639	119294638	USP53|ENST00000509769.5	+	119239639,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119266299,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119266333,119267482,119268420,119269837,119272034,119273708,119291261,119294638	0.891304
NCI_H460_nuclear_fraction	chr8	18010632	18010657	18010653	+	RAMPAGE_only	4	4	19	0.908401	3.947703	chr8	18010700	18010985	SINE|Alu|AluSg	+	chr8	18013827	18027758	PCM1|ENST00000519802.5	+	18013827,18014583,18025360,18025543,18027636	18014036,18014840,18025453,18025658,18027758	0.736842
NCI_H460_nuclear_fraction	chr3	149284778	149284779	149284778	+	High_confidence	10	10	10	0.478106	3.121928	chr3	149283837	149285090	LTR|ERV1|LTR12C	+	chr3	149284781	149333653	AC093001.1|ENST00000489011.1	+	149284781,149333503	149285182,149333653	0.600000
NCI_H460_nuclear_fraction	chr15	53684308	53684432	53684308	-	High_confidence	22	22	225	10.757377	6.581570	chr15	53684199	53690229	LINE|L1|L1PA3	+	chr15	53515162	53684627	MSTRG.13237.6	-	53515162,53523217,53597078,53609512,53613665,53615425,53665571,53684145	53517754,53523322,53597274,53609592,53613757,53616243,53665768,53684627	0.906667
NCI_H460_nuclear_fraction	chr9	62897430	62897431	62897430	+	High_confidence	16	16	18	0.860590	3.725481	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.500000
NCI_H460_nuclear_fraction	chr2	3536845	3536882	3536845	-	RAMPAGE_only	4	4	31	1.482127	4.640224	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3532118	3558289	MSTRG.21712.7	-	3532118,3536723,3545700,3547930,3548639,3549057,3550372,3552143,3556788,3557894	3534255,3536911,3545871,3548055,3548724,3549112,3550472,3552308,3556904,3558289	0.645161
NCI_H460_nuclear_fraction	chr3	57983416	57983444	57983435	-	High_confidence	18	21	71	3.394550	5.008401	chr3	57983100	57983397	SINE|Alu|AluJb	-	chr3	57974919	57983122	MSTRG.28214.1	-	57974919,57982960	57975075,57983122	0.943662
NCI_H460_nuclear_fraction	chr13	109269287	109269354	109269302	-	High_confidence	8	10	80	3.824845	5.634184	chr13	109269042	109269447	LTR|ERV1|HERVH-int	+	chr13	109201114	109269592	MSTRG.10853.3	-	109201114,109267733,109268785	109201487,109267840,109269592	0.737500
NCI_H460_nuclear_fraction	chr5	150640295	150640400	150640347	+	High_confidence	61	62	221	10.566134	6.369039	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640357	150650380	MSTRG.32945.6	+	150640357,150647943	150640425,150650380	0.936652
NCI_H460_nuclear_fraction	chrX	111126948	111127220	111126948	+	RAMPAGE_only	3	3	67	3.203308	5.030506	chrX	111126947	111127294	LINE|L1|L1ME4a	-	chrX	111123103	111131359	MSTRG.42263.21	+	111123103,111124250,111126921	111123278,111126869,111131359	1.000000
NCI_H460_nuclear_fraction	chr12	102153215	102153233	102153232	+	High_confidence	3	3	6	0.286863	2.584963	chr12	102153060	102153357	LTR|ERV1|LTR8A	+	chr12	102152881	102155280	MSTRG.9513.18	+	102152881,102153868,102154826	102153762,102153976,102155280	0.666667
NCI_H460_nuclear_fraction	chr5	614549	614556	614549	+	High_confidence	4	4	9	0.430295	3.000000	chr5	614444	614587	SINE|Alu|AluY	-	chr5	614562	642174	MSTRG.31320.7	+	614562,618989,620068,624470,633768,635371,637516,639088,640407,641202,642019	614681,619117,620261,624579,633947,635584,637818,639224,641137,641867,642174	0.555556
NCI_H460_nuclear_fraction	chrX	35890901	35890910	35890901	+	RAMPAGE_only	10	10	17	0.812780	3.500000	chrX	35890725	35891088	LTR|ERVL|LTR41	+	chrX	35919733	35990147	CFAP47|ENST00000297866.9	+	35919733,35926016,35941282,35948313,35951130,35951802,35953591,35955960,35966564,35967618,35970767,35971585,35971868,35975146,35975671,35989318	35920048,35926168,35941398,35948452,35951359,35951963,35953719,35956196,35966754,35967832,35970923,35971772,35971965,35975363,35975913,35990147	0.764706
NCI_H460_nuclear_fraction	chr2	47369479	47369497	47369479	+	High_confidence	4	4	22	1.051832	3.880180	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369147	47387028	EPCAM|NM_002354.2	+	47369147,47373462,47373807,47375233,47377013,47378952,47379768,47385165,47386571	47369581,47373570,47374048,47375299,47377077,47379054,47379969,47385210,47387028	0.954545
NCI_H460_nuclear_fraction	chr15	80059915	80059933	80059918	+	High_confidence	99	105	222	10.613945	5.361681	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059924	80138360	MSTRG.13780.8	+	80059924,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80098578,80120498,80121820,80122800,80131293,80138360	0.959459
NCI_H460_nuclear_fraction	chr17	78632047	78632109	78632067	-	High_confidence	11	17	68	3.251118	5.315870	chr17	78632006	78632221	DNA|hAT-Charlie|MER1A	+	chr17	78617396	78632067	LINC02081|ENST00000647957.1	-	78617396,78624191,78628317,78629620,78630031,78631989	78617626,78624315,78628438,78629822,78630430,78632067	0.867647
NCI_H460_nuclear_fraction	chr11	27499660	27499680	27499660	-	RAMPAGE_only	13	13	41	1.960233	4.723406	chr11	27499640	27499926	SINE|Alu|AluY	-	chr11	27494575	27506769	MSTRG.6277.1	-	27494575,27495236,27501494,27501801,27506715	27495196,27499568,27501566,27501920,27506769	1.000000
NCI_H460_nuclear_fraction	chr10	6737334	6737433	6737414	+	High_confidence	46	47	210	10.040218	6.396931	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.885714
NCI_H460_nuclear_fraction	chr2	233357145	233357159	233357158	+	RAMPAGE_only	3	3	9	0.430295	2.725481	chr2	233356905	233357200	LTR|ERVL|LTR33A_	-	chr2	233354571	233472096	MSTRG.24576.4	+	233354571,233388256,233390402,233434379,233434768,233435817,233436315,233437376,233438216,233441886,233445622,233446711,233448086,233448275,233449102,233449981,233450921,233451963,233454762,233456898,233457220,233458283,233459756,233460193,233462347,233462642,233464163,233467085,233468422,233469370,233470843	233354674,233388367,233390483,233434484,233434901,233435924,233436441,233437479,233438379,233441995,233445762,233446796,233448181,233448375,233449376,233450131,233451050,233452060,233454873,233456995,233457328,233458397,233459891,233460345,233462459,233462735,233464283,233467203,233468553,233470792,233472096	0.777778
NCI_H460_nuclear_fraction	chr2	159428326	159428388	159428347	-	RAMPAGE_only	3	5	21	1.004022	4.121928	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.523810
NCI_H460_nuclear_fraction	chr12	42442536	42442537	42442536	+	High_confidence	163	163	201	9.609923	5.540244	chr12	42442198	42442662	LTR|ERVK|LTR22E	+	chr12	42442648	42448623	PPHLN1|ENST00000624028.1	+	42442648	42448623	0.995025
NCI_H460_nuclear_fraction	chr8	75278426	75278603	75278573	-	High_confidence	8	9	82	3.920466	5.685288	chr8	75278367	75284402	LINE|L1|L1PA4	+	chr8	75223116	75278481	CASC9|NR_103850.2	-	75223116,75278356	75224358,75278481	0.548780
NCI_H460_nuclear_fraction	chr5	96647688	96647724	96647723	+	RAMPAGE_only	3	3	7	0.334674	2.807355	chr5	96647497	96647892	LTR|ERVL-MaLR|MLT1B	+	chr5	96662036	96774683	CAST|NM_001190442.1	+	96662036,96675538,96695835,96722638,96726793,96727488,96729152,96729611,96730779,96736171,96737848,96740037,96741265,96741493,96742654,96746341,96747344,96748517,96750586,96754059,96754657,96757443,96757582,96762273,96765220,96766052,96767437,96767906,96770530,96771643,96772639	96662165,96675601,96695907,96722698,96726859,96727530,96729209,96729725,96730860,96736240,96737947,96740118,96741358,96741580,96742756,96746425,96747392,96748613,96750682,96754161,96754741,96757494,96757654,96762372,96765325,96766145,96767482,96767999,96770602,96771702,96774683	0.714286
NCI_H460_nuclear_fraction	chrX	20026415	20026441	20026440	-	High_confidence	2	2	7	0.334674	2.584963	chrX	20026328	20026400	LINE|L1|L1MB3	-	chrX	20021347	20025943	MAP7D2|ENST00000466145.1	-	20021347,20024950,20025680	20021549,20025083,20025943	0.857143
NCI_H460_nuclear_fraction	chr19	3062966	3062978	3062977	-	High_confidence	6	6	13	0.621537	3.188722	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.846154
NCI_H460_nuclear_fraction	chr2	71423207	71423226	71423225	+	RAMPAGE_only	3	3	10	0.478106	3.121928	chr2	71423244	71423287	DNA|hAT-Ac|OldhAT1	+	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	1.000000
NCI_H460_nuclear_fraction	chr18	68790593	68790620	68790619	+	RAMPAGE_only	3	3	11	0.525916	2.921928	chr18	68784834	68790853	LINE|L1|L1PA2	-	chr18	68798079	69055189	CCDC102B|NM_024781.2	+	68798079,68836748,68838705,68846312,68874668,68897218,69010933,69054029	68798181,68837369,68838926,68846421,68874785,68897428,69011104,69055189	0.545455
NCI_H460_nuclear_fraction	chr2	181954484	181954513	181954491	+	High_confidence	4	4	11	0.525916	2.921928	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.636364
NCI_H460_nuclear_fraction	chr17	13671892	13671918	13671892	-	High_confidence	2	2	10	0.478106	3.121928	chr17	13671360	13673719	LINE|L1|L1PBa	+	chr17	13661673	13671357	MSTRG.16565.1	-	13661673,13671218	13665512,13671357	0.700000
NCI_H460_nuclear_fraction	chr16	726849	726918	726917	-	High_confidence	4	4	27	1.290885	3.790767	chr16	726845	726893	LINE|L2|L2b	-	chr16	722587	726880	CCDC78|ENST00000466708.5	-	722587,722921,723094,723856,724105,724321,724910,725077,725236,725445,725793,725965,726614	722789,723022,723161,723936,724205,724806,724989,725145,725293,725580,725880,726085,726880	0.888889
NCI_H460_nuclear_fraction	chr1	45522977	45522994	45522993	-	High_confidence	5	5	11	0.525916	3.095795	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45514506	45523047	PRDX1|ENST00000424390.1	-	45514506,45514872,45515653,45518937,45522777	45514637,45514995,45515807,45519054,45523047	0.818182
NCI_H460_nuclear_fraction	chr8	128559749	128559790	128559789	-	RAMPAGE_only	4	4	15	0.717158	2.950212	chr8	128559712	128560014	SINE|Alu|AluSc8	-	chr8	128559022	128561126	LINC00824|ENST00000523173.5	-	128559022,128560239,128561069	128559576,128560548,128561126	0.733333
NCI_H460_nuclear_fraction	chr12	131371692	131371737	131371697	-	High_confidence	9	10	48	2.294907	5.182040	chr12	131371471	131371655	LTR|ERVL|LTR33A	-	chr12	131350724	131371698	MSTRG.10020.1	-	131350724,131353686,131371390	131352999,131353783,131371698	0.625000
NCI_H460_nuclear_fraction	chr21	41186787	41186791	41186787	-	High_confidence	518	543	830	39.682767	6.227624	chr21	41186600	41187083	LTR|ERV1|MER66B	-	chr21	41176445	41186788	PLAC4|ENST00000440221.2	-	41176445,41180471,41186122,41186447	41176786,41180573,41186342,41186788	0.855422
NCI_H460_nuclear_fraction	chr1	245816933	245816999	245816978	-	RAMPAGE_only	14	14	52	2.486149	4.993615	chr1	245816539	245822560	LINE|L1|L1PA3	+	chr1	245749366	245814411	SMYD3|ENST00000490322.1	-	245749366,245814341	245749664,245814411	0.730769
NCI_H460_nuclear_fraction	chr7	102973297	102973322	102973321	+	High_confidence	21	23	48	2.294907	3.903359	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973436	102978667	NFE4|ENST00000638942.1	+	102973436,102975890,102978380	102973771,102976230,102978667	0.854167
NCI_H460_nuclear_fraction	chr22	21014917	21014988	21014949	+	High_confidence	9	9	56	2.677392	4.802629	chr22	21014708	21014996	LINE|L2|L2b	+	chr22	21015026	21028830	P2RX6|ENST00000413302.6	+	21015026,21015941,21017988,21022675,21022941,21023117,21023274,21023508,21025804,21026010,21026251,21026419	21015338,21016092,21018060,21022751,21023035,21023198,21023416,21023618,21025898,21026076,21026329,21028830	0.785714
NCI_H460_nuclear_fraction	chr20	52105665	52105666	52105665	-	High_confidence	6	6	8	0.382485	2.807355	chr20	52105641	52105800	DNA|hAT-Charlie|MER5A1	-	chr20	52084010	52105644	ZFP64|ENST00000371523.8	-	52084010,52088391,52097372,52098437,52105131	52085266,52088643,52097435,52098587,52105644	0.875000
NCI_H460_nuclear_fraction	chr15	101626825	101626849	101626825	-	RAMPAGE_only	5	5	18	0.860590	3.454822	chr15	101626450	101632475	LINE|L1|L1PA2	+	chr15	101621643	101633697	TM2D3|ENST00000560883.1	-	101621643,101626447,101632942,101633142	101621755,101626563,101633026,101633697	0.666667
NCI_H460_nuclear_fraction	chr15	53684500	53684505	53684500	-	High_confidence	4	4	8	0.382485	2.500000	chr15	53684199	53690229	LINE|L1|L1PA3	+	chr15	53515162	53684627	MSTRG.13237.6	-	53515162,53523217,53597078,53609512,53613665,53615425,53665571,53684145	53517754,53523322,53597274,53609592,53613757,53616243,53665768,53684627	1.000000
NCI_H460_nuclear_fraction	chr4	141332616	141332617	141332616	-	High_confidence	35	35	38	1.816801	4.311635	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.947368
NCI_H460_nuclear_fraction	chr17	41871790	41871809	41871790	-	RAMPAGE_only	2	2	10	0.478106	3.321928	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.600000
NCI_H460_nuclear_fraction	chr6	148527053	148527079	148527078	+	RAMPAGE_only	26	27	39	1.864612	4.416830	chr6	148526867	148527135	SINE|Alu|AluY	-	chr6	148524412	148552048	SASH1|ENST00000622663.1	+	148524412,148527452,148532796,148533770,148534750,148540442,148543679,148546014,148548294,148551424	148525365,148527596,148532966,148533980,148534901,148540556,148544818,148546146,148549732,148552048	0.717949
NCI_H460_nuclear_fraction	chr8	128587819	128588239	128588134	-	High_confidence	27	28	598	28.590717	6.223100	chr8	128587982	128588445	LINE|L1|L1PB4	-	chr8	128584491	128588892	MSTRG.39220.1	-	128584491	128588892	0.996656
NCI_H460_nuclear_fraction	chr17	60887308	60887327	60887308	+	High_confidence	4	4	10	0.478106	3.169925	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.500000
NCI_H460_nuclear_fraction	chr2	227164620	227164621	227164620	+	High_confidence	41	41	53	2.533960	5.147820	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.735849
NCI_H460_nuclear_fraction	chr10	99750080	99750111	99750110	+	RAMPAGE_only	4	4	10	0.478106	2.646439	chr10	99749914	99750165	LTR|ERV1|MER34A	-	chr10	99732280	99756134	MSTRG.5351.5	+	99732280,99736245,99739709,99743152,99744036,99747256,99750368,99755624	99732409,99736317,99739769,99743362,99744072,99747390,99754634,99756134	1.000000
NCI_H460_nuclear_fraction	chr9	112803705	112803718	112803717	+	RAMPAGE_only	4	4	14	0.669348	3.392747	chr9	112798107	112804159	LINE|L1|L1HS	-	chr9	112750853	112874987	SNX30|NM_001012994.1	+	112750853,112804775,112817704,112830724,112836213,112838497,112850858,112864246,112868783	112751157,112804967,112817815,112830883,112836409,112838697,112850945,112864399,112874987	0.785714
NCI_H460_nuclear_fraction	chr15	39420947	39420964	39420963	-	High_confidence	3	3	6	0.286863	2.584963	chr15	39420570	39426588	LINE|L1|L1PA2	+	chr15	39419029	39420709	AC013652.1|ENST00000558277.1	-	39419029,39420543	39419652,39420709	0.500000
NCI_H460_nuclear_fraction	chr19	11344683	11344702	11344683	+	High_confidence	3	3	16	0.764969	3.456565	chr19	11344711	11344763	DNA|hAT-Tip100|MER91A	+	chr19	11344683	11346298	CCDC159|ENST00000589186.5	+	11344683,11345179,11346017	11344755,11345381,11346298	0.687500
NCI_H460_nuclear_fraction	chr7	74186871	74186888	74186871	+	RAMPAGE_only	8	8	20	0.956211	3.884184	chr7	74186788	74186924	SINE|Alu|AluSx3	-	chr7	74174375	74197099	EIF4H|NM_031992.1	+	74174375,74187610,74189672,74189821,74194740,74195168	74174442,74187798,74189737,74189918,74194878,74197099	0.950000
NCI_H460_nuclear_fraction	chr6	165516209	165516222	165516209	-	RAMPAGE_only	3	3	11	0.525916	3.321928	chr6	165516113	165516378	LINE|L2|L2	+	chr6	165327288	165503356	PDE10A|ENST00000649761.1	-	165327288,165336122,165339277,165343390,165379193,165388297,165392645,165395180,165396316,165413500,165416188,165418634,165428657,165430286,165431421,165432973,165435236,165448927,165450241,165482314,165503004	165333127,165336211,165339358,165343502,165379366,165388453,165392796,165395264,165396459,165413687,165416281,165418777,165428709,165430345,165431472,165433129,165435377,165448977,165450362,165482343,165503356	0.727273
NCI_H460_nuclear_fraction	chr3	101466871	101466886	101466874	-	RAMPAGE_only	6	6	21	1.004022	4.037401	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.714286
NCI_H460_nuclear_fraction	chr6	149895936	149895968	149895945	-	High_confidence	3	3	16	0.764969	3.750000	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.812500
NCI_H460_nuclear_fraction	chr14	103712932	103712943	103712932	-	High_confidence	9	11	15	0.717158	3.640224	chr14	103712860	103713310	LTR|ERV1|MER31A	+	chr14	103697617	103712104	XRCC3|ENST00000553264.5	-	103697617,103699132,103699363,103703172,103707002,103708521,103711032,103711465	103699017,103699179,103699576,103703327,103707215,103708659,103711245,103712104	0.933333
NCI_H460_nuclear_fraction	chr6	111606267	111606286	111606285	-	High_confidence	3	3	7	0.334674	2.521641	chr6	111606274	111606582	SINE|Alu|AluY	+	chr6	111558939	111606278	TRAF3IP2|ENST00000340026.10	-	111558939,111562964,111566443,111567623,111572894,111575642,111580196,111591257,111601195,111605775	111559551,111563039,111566560,111567692,111572983,111575821,111580389,111592094,111601306,111606278	0.857143
NCI_H460_nuclear_fraction	chr5	75696129	75696165	75696144	-	RAMPAGE_only	6	6	19	0.908401	3.725481	chr5	75695698	75701728	LINE|L1|L1PA3	+	chr5	75674430	75712432	POC5|ENST00000510798.5	-	75674430,75685206,75689011,75690382,75692395,75694654,75702604,75705703,75707736,75712379	75674578,75685484,75689165,75690562,75692500,75694831,75702810,75705787,75707875,75712432	0.631579
NCI_H460_nuclear_fraction	chr1	11058810	11058830	11058817	-	RAMPAGE_only	3	3	11	0.525916	3.095795	chr1	11058682	11058785	SINE|MIR|MIRc	-	chr1	11054588	11060024	SRM|ENST00000376957.6	-	11054588,11054961,11055780,11056010,11056603,11058799,11059224,11059776	11054885,11055084,11055926,11056094,11056757,11058892,11059345,11060024	1.000000
NCI_H460_nuclear_fraction	chr1	148305163	148305173	148305163	-	RAMPAGE_only	7	7	26	1.243075	4.293661	chr1	148305024	148305382	LINE|L1|L1MEc	-	chr1	148290889	148297271	LINC01138|ENST00000434245.3	-	148290889,148292913,148295749,148296123,148296272,148297128	148291301,148293048,148295913,148296182,148296499,148297271	0.807692
NCI_H460_nuclear_fraction	chr12	109885820	109885845	109885820	+	RAMPAGE_only	81	84	192	9.179628	6.508730	chr12	109885780	109885918	SINE|Alu|AluJr	-	chr12	109900263	109918066	MSTRG.9642.1	+	109900263,109903026,109903936,109904736,109906571,109907525,109908585,109908870,109912990,109915402,109916590	109900426,109903214,109904147,109904793,109906640,109907699,109908698,109911235,109914627,109915546,109918066	0.843750
NCI_H460_nuclear_fraction	chr4	70993073	70993074	70993073	+	High_confidence	8	8	8	0.382485	2.750000	chr4	70992983	70993102	SINE|MIR|MIR	+	chr4	70993438	71030914	DCK|ENST00000286648.9	+	70993438,70998066,71022366,71023558,71025815,71026664,71029351	70993926,70998182,71022560,71023706,71025931,71026755,71030914	1.000000
NCI_H460_nuclear_fraction	chr7	8303984	8304094	8304026	+	High_confidence	25	25	221	10.566134	6.515965	chr7	8298113	8304140	LINE|L1|L1PA3	-	chr7	8303753	8348115	MSTRG.35674.5	+	8303753,8340382,8341016	8304155,8340556,8348115	0.683258
NCI_H460_nuclear_fraction	chr18	69947872	69947907	69947906	-	High_confidence	59	86	308	14.725653	6.076458	chr18	69947667	69947857	LINE|L2|L2a	-	chr18	69862955	69947853	CD226|NM_001303618.1	-	69862955,69867356,69873143,69895700,69946733,69947360	69864439,69867411,69873246,69896045,69947069,69947853	0.983766
NCI_H460_nuclear_fraction	chr8	61725847	61725848	61725847	-	RAMPAGE_only	40	40	47	2.247096	5.061482	chr8	61725647	61725942	LTR|ERVL-MaLR|MLT1A1	-	chr8	61623709	61714640	ASPH|NM_032466.3	-	61623709,61633682,61637946,61638321,61642887,61643385,61643944,61644599,61646749,61651049,61653567,61680967,61684038,61714268	61626280,61633727,61638003,61638363,61642920,61643433,61644001,61644632,61646878,61651124,61653660,61681036,61684188,61714640	0.510638
NCI_H460_nuclear_fraction	chr9	129488730	129488905	129488856	+	High_confidence	94	97	316	15.108138	5.780568	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.860759
NCI_H460_nuclear_fraction	chr1	28506373	28506431	28506373	+	High_confidence	3	3	19	0.908401	3.576618	chr1	28506187	28506484	SINE|Alu|AluSx	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.947368
NCI_H460_nuclear_fraction	chr10	32446972	32446988	32446977	+	High_confidence	20	21	42	2.008044	4.871928	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.761905
NCI_H460_nuclear_fraction	chr2	187513646	187513654	187513652	-	High_confidence	4	6	15	0.717158	3.521641	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	0.733333
NCI_H460_nuclear_fraction	chr17	6853863	6853929	6853886	+	High_confidence	35	35	263	12.574178	7.200781	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853860	6902192	ALOX12P2|ENST00000574727.5	+	6853860,6854213,6892002,6894317,6894883,6895095,6895342,6896315,6896553,6898528,6898799,6899390,6899592,6899867	6854060,6854435,6892075,6894513,6895006,6895199,6895503,6896459,6896763,6898698,6898929,6899490,6899760,6902192	0.642586
NCI_H460_nuclear_fraction	chr15	41365814	41365854	41365853	+	High_confidence	10	11	23	1.099643	3.414441	chr15	41365708	41366019	SINE|Alu|AluSc8	-	chr15	41365746	41380747	MSTRG.12885.25	+	41365746,41371526,41375711,41377195,41380092	41365863,41371684,41375828,41377304,41380747	0.956522
NCI_H460_nuclear_fraction	chr3	169812903	169812904	169812903	-	High_confidence	103	105	120	5.737268	5.018975	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.933333
NCI_H460_nuclear_fraction	chr7	138890766	138890787	138890786	-	RAMPAGE_only	2	2	7	0.334674	2.584963	chr7	138890733	138890907	LINE|L2|L2	+	chr7	138831380	138981318	KIAA1549|ENST00000440172.5	-	138831380,138840132,138844316,138852222,138861138,138867974,138869537,138871156,138879537,138881387,138894341,138898954,138903587,138905021,138906918,138908990,138911145,138912371,138916747,138981082	138838112,138840278,138844474,138852269,138861456,138868128,138869761,138871362,138879653,138881584,138894526,138899132,138903736,138905081,138907102,138909121,138911323,138912460,138919438,138981318	0.571429
NCI_H460_nuclear_fraction	chr9	135519344	135519373	135519372	+	High_confidence	17	17	62	2.964255	5.557706	chr9	135519212	135519671	LINE|L1|L1MEi	-	chr9	135519458	135526532	MSTRG.41089.1	+	135519458,135521214,135522046,135523231,135523879,135524829,135525131,135526343	135519513,135521587,135522177,135523302,135523990,135524931,135525158,135526532	0.887097
NCI_H460_nuclear_fraction	chr22	18149865	18149871	18149868	+	High_confidence	67	67	140	6.693479	5.472988	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.907143
NCI_H460_nuclear_fraction	chr1	78620899	78620941	78620922	+	High_confidence	2	3	10	0.478106	3.169925	chr1	78620580	78620966	LINE|L1|L1MA4	-	chr1	78620468	78664078	MSTRG.1715.5	+	78620468,78627905,78629719,78635336,78637031,78641020,78641434,78641774,78650185,78654242,78655013,78655361,78659311,78660553,78662703,78663764	78620571,78628999,78629915,78635489,78637203,78641121,78641609,78649905,78650652,78654279,78655209,78655511,78659483,78660654,78662878,78664078	0.700000
NCI_H460_nuclear_fraction	chr15	20680570	20680600	20680570	-	RAMPAGE_only	4	8	25	1.195264	3.621176	chr15	20680529	20680580	DNA|TcMar-Tigger|MER44B	-	chr15	20664677	20683503	MSTRG.12442.3	-	20664677,20669467,20671112,20681109,20683394	20667308,20669637,20671268,20681218,20683503	0.720000
NCI_H460_nuclear_fraction	chr8	128581836	128581864	128581851	-	High_confidence	3	3	12	0.573727	3.418296	chr8	128581801	128581897	DNA|hAT-Tip100|MER91A	-	chr8	128576397	128582150	MSTRG.39219.1	-	128576397,128582088	128582048,128582150	1.000000
NCI_H460_nuclear_fraction	chr9	127451087	127451128	127451104	-	High_confidence	6	6	22	1.051832	3.784184	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.909091
NCI_H460_nuclear_fraction	chr14	101723342	101723343	101723342	+	RAMPAGE_only	8	8	12	0.573727	3.251629	chr14	101723133	101723569	LTR|ERVL|MLT2A2	+	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	1.000000
NCI_H460_nuclear_fraction	chr20	50483576	50483611	50483598	-	High_confidence	5	5	24	1.147454	3.795089	chr20	50483433	50483688	LTR|ERVL|LTR16C	-	chr20	50481669	50483331	MSTRG.25579.1	-	50481669	50483331	0.875000
NCI_H460_nuclear_fraction	chrX	19674234	19674251	19674239	-	RAMPAGE_only	3	3	10	0.478106	3.121928	chrX	19674187	19674396	DNA|hAT-Tip100?|MamRep1879	-	chrX	19533964	19671001	SH3KBP1|NM_001184960.1	-	19533964,19537716,19541924,19545921,19549973,19569102,19588642,19592066,19594948,19607937,19631863,19645399,19670861	19536458,19537780,19542193,19546050,19550083,19569188,19588802,19592147,19595000,19608045,19631958,19645475,19671001	1.000000
NCI_H460_nuclear_fraction	chr2	73982163	73982169	73982163	-	High_confidence	5	5	10	0.478106	2.947703	chr2	73982060	73982404	LINE|L2|L2c	-	chr2	73957966	73981439	DGUOK-AS1|NR_104030.1	-	73957966,73981134	73958207,73981439	0.800000
NCI_H460_nuclear_fraction	chr9	39809803	39809860	39809858	-	High_confidence	6	9	36	1.721180	3.808271	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803576	39810013	MSTRG.39963.3	-	39803576,39809485	39803859,39810013	0.833333
NCI_H460_nuclear_fraction	chrX	68217292	68217334	68217302	-	RAMPAGE_only	12	14	63	3.012065	5.125421	chrX	68216915	68222939	LINE|L1|L1PA2	+	chrX	68042343	68433457	OPHN1|NM_002547.2	-	68042343,68048415,68052539,68053644,68063853,68073151,68096869,68111853,68113180,68119247,68192918,68193889,68194464,68197185,68201618,68206572,68210152,68212107,68213861,68234486,68274737,68283055,68299000,68432866,68433167	68047163,68048457,68052590,68053810,68064177,68073299,68097029,68111959,68113239,68119332,68192993,68193952,68194498,68197264,68201710,68206673,68210282,68212212,68213972,68234588,68274809,68283117,68299096,68433024,68433457	0.523810
NCI_H460_nuclear_fraction	chr5	147869802	147869819	147869802	+	High_confidence	3	3	7	0.334674	2.584963	chr5	147869589	147869833	LTR|ERV1|LTR8	+	chr5	147870681	147882190	SCGB3A2|ENST00000504320.5	+	147870681,147881445,147882026	147870754,147881648,147882190	0.857143
NCI_H460_nuclear_fraction	chr4	188109522	188109567	188109566	-	High_confidence	8	8	47	2.247096	4.996069	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188091372	188109591	MSTRG.31279.5	-	188091372,188097060,188097323,188101055,188104836,188105179,188109242	188091941,188097161,188099175,188101250,188104932,188105590,188109591	0.957447
NCI_H460_nuclear_fraction	chr14	50766336	50766372	50766353	-	High_confidence	3	3	15	0.717158	3.467720	chr14	50766057	50766321	SINE|MIR|MIR	-	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.733333
NCI_H460_nuclear_fraction	chr3	9987139	9987153	9987152	+	High_confidence	7	7	17	0.812780	2.578552	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986897	10006657	MSTRG.27428.3	+	9986897,9988711,10002716	9988007,9988747,10006657	0.823529
NCI_H460_nuclear_fraction	chr6	2881285	2881286	2881285	-	High_confidence	9	9	9	0.430295	2.725481	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
NCI_H460_nuclear_fraction	chr1	75376210	75376280	75376210	-	High_confidence	5	6	54	2.581770	4.997953	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75227805	75376283	MSTRG.1666.3	-	75227805,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75376083	75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75376283	0.555556
NCI_H460_nuclear_fraction	chr12	8681676	8681677	8681676	+	High_confidence	103	104	143	6.836911	6.534396	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.762238
NCI_H460_nuclear_fraction	chr5	154287434	154287470	154287469	+	High_confidence	15	15	34	1.625559	4.359378	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	0.705882
NCI_H460_nuclear_fraction	chr1	148279176	148279199	148279198	+	High_confidence	2	3	9	0.430295	2.725481	chr1	148279033	148279814	LINE|L1|L1MEc	+	chr1	148279254	148294883	MSTRG.2328.1	+	148279254,148287689,148288005	148279544,148287915,148294883	0.666667
NCI_H460_nuclear_fraction	chr8	61578141	61578142	61578141	+	High_confidence	423	424	428	20.462921	5.475060	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.990654
NCI_H460_nuclear_fraction	chr6	73645690	73645704	73645690	-	High_confidence	5	6	11	0.525916	2.913977	chr6	73645505	73645815	SINE|Alu|AluY	+	chr6	73593378	73645454	MSTRG.34517.1	-	73593378,73600350,73610399,73615314,73621803,73635381,73636620,73638411,73641690,73644406,73645288	73595214,73600441,73610547,73615447,73621962,73635500,73636707,73638499,73641924,73644603,73645454	0.909091
NCI_H460_nuclear_fraction	chr1	241632124	241632136	241632124	-	RAMPAGE_only	12	14	21	1.004022	3.921928	chr1	241632007	241632363	LTR|ERVL-MaLR|THE1B	+	chr1	241628863	241635930	CHML|NM_001821.3	-	241628863	241635930	0.952381
NCI_H460_nuclear_fraction	chr7	107880961	107881000	107880962	+	High_confidence	6	10	28	1.338696	4.085055	chr7	107880697	107880993	DNA|hAT-Charlie|MER1B	-	chr7	107880959	107919713	MSTRG.37125.1	+	107880959,107893199,107901737,107902324,107903477,107904957,107905360,107906266,107915505,107916793,107917272,107917923,107919009,107919193	107881112,107893278,107901817,107902393,107903547,107905058,107905504,107906368,107915696,107916964,107917462,107918061,107919099,107919713	0.607143
NCI_H460_nuclear_fraction	chr3	58526760	58526766	58526765	-	High_confidence	47	50	87	4.159519	5.380136	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	0.931034
NCI_H460_nuclear_fraction	chr14	101731413	101731495	101731413	+	High_confidence	51	51	134	6.406615	6.132245	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.753731
NCI_H460_nuclear_fraction	chr14	68882874	68882897	68882879	-	High_confidence	4	5	12	0.573727	3.459432	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.916667
NCI_H460_nuclear_fraction	chr15	69093411	69093445	69093413	+	RAMPAGE_only	20	33	128	6.119752	4.636983	chr15	69093186	69093505	LTR|ERVL|LTR16A	-	chr15	69080869	69093872	MSTRG.13521.11	+	69080869,69086699,69090914	69081376,69086741,69093872	0.789062
NCI_H460_nuclear_fraction	chr9	77822994	77823008	77822997	-	RAMPAGE_only	38	42	93	4.446382	5.511869	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77716273	78031449	GNAQ|NM_002072.4	-	77716273,77728513,77794462,77797519,77815615,77922160,78031099	77721513,77728667,77794592,77797648,77815770,77922345,78031449	0.602151
NCI_H460_nuclear_fraction	chr9	33306351	33306377	33306352	+	RAMPAGE_only	15	28	72	3.442361	4.828253	chr9	33306214	33306550	LINE|L2|L2c	-	chr9	33294329	33348233	MSTRG.39786.4	+	33294329,33301262,33303190,33307193,33311105,33313653,33318730,33328580,33332471,33338509,33342745,33344068,33347037,33347662	33295427,33301421,33303268,33307299,33311177,33313793,33319127,33328678,33332502,33338589,33342854,33344188,33347117,33348233	0.708333
NCI_H460_nuclear_fraction	chr7	77414971	77415001	77414971	-	RAMPAGE_only	13	13	21	1.004022	3.005679	chr7	77414844	77415033	SINE|Alu|AluSx	-	chr7	77310750	77416400	GSAP|NM_017439.3	-	77310750,77311840,77312100,77313487,77314369,77320724,77321332,77323646,77326211,77328605,77329332,77330238,77349350,77352943,77353571,77355212,77355554,77360823,77362582,77374069,77375057,77376847,77377285,77381304,77382573,77387359,77396981,77397345,77404558,77406028,77416212	77311449,77311940,77312202,77313549,77314489,77320819,77321403,77323742,77326273,77328637,77329391,77330367,77349404,77353026,77353641,77355430,77355647,77360901,77362660,77374155,77375101,77376907,77377390,77381354,77382643,77387448,77397035,77397415,77404615,77406105,77416400	0.857143
NCI_H460_nuclear_fraction	chr5	140700445	140700452	140700445	+	High_confidence	1036	1283	2182	104.322649	4.677999	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.979377
NCI_H460_nuclear_fraction	chrX	24151402	24151403	24151402	+	High_confidence	7	7	11	0.525916	3.277613	chrX	24151340	24151459	LINE|L2|L2b	-	chrX	24151425	24172914	ZFX|ENST00000480195.1	+	24151425,24152719,24172714	24151481,24152830,24172914	0.545455
NCI_H460_nuclear_fraction	chr22	50756859	50756866	50756861	+	High_confidence	6	9	18	0.860590	3.057476	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.777778
NCI_H460_nuclear_fraction	chr19	5680234	5680261	5680234	-	High_confidence	5	5	26	1.243075	4.392747	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.961538
NCI_H460_nuclear_fraction	chr13	109269385	109269434	109269433	-	High_confidence	6	8	20	0.956211	3.884184	chr13	109269432	109270085	LTR|ERV1|HERVH-int	+	chr13	109201114	109269592	MSTRG.10853.3	-	109201114,109267733,109268785	109201487,109267840,109269592	0.900000
NCI_H460_nuclear_fraction	chr15	34588448	34588453	34588450	-	RAMPAGE_only	34	72	104	4.972299	5.891411	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34381061	34583651	MSTRG.12757.4	-	34381061,34381700,34381967,34382150,34382385,34382796,34383440,34383745,34383960,34385047,34385253,34385426,34385739,34386624,34389643,34391122,34398633,34399154,34400711,34404916,34406673,34544857,34545377,34546934,34551137,34552894,34553744,34583515	34381613,34381856,34382068,34382251,34382529,34383053,34383528,34383853,34384047,34385157,34385338,34385474,34385778,34387952,34389768,34391426,34398729,34399203,34400759,34405055,34406859,34544953,34545426,34546982,34551276,34553091,34553956,34583651	0.500000
NCI_H460_nuclear_fraction	chr2	122060734	122060739	122060734	-	High_confidence	65	66	141	6.741289	5.496808	chr2	122060558	122060937	LTR|ERVL|MLT2A1	-	chr2	122058095	122060728	MSTRG.23273.1	-	122058095,122060581	122058441,122060728	0.567376
NCI_H460_nuclear_fraction	chr2	10120434	10120435	10120434	+	High_confidence	152	167	209	9.992408	6.257390	chr2	10120422	10120535	SINE|Alu|FLAM_C	+	chr2	10120733	10121065	RRM2|ENST00000607140.1	+	10120733	10121065	0.775120
NCI_H460_nuclear_fraction	chr3	190165291	190165313	190165291	+	High_confidence	2	2	8	0.382485	2.521641	chr3	190164620	190165416	LINE|L1|L1M1	-	chr3	190165606	190166031	MSTRG.29466.1	+	190165606	190166031	0.500000
NCI_H460_nuclear_fraction	chr6	157317290	157317306	157317290	-	RAMPAGE_only	10	13	24	1.147454	4.334963	chr6	157317056	157317930	LINE|L2|L2	+	chr6	157289385	157323601	TMEM242|ENST00000400788.8	-	157289385,157318781,157322704,157323411	157292999,157318919,157322805,157323601	0.541667
NCI_H460_nuclear_fraction	chr1	23403943	23403949	23403943	-	RAMPAGE_only	6	7	14	0.669348	3.180833	chr1	23403928	23404035	LINE|RTE-BovB|MamRTE1	+	chr1	23381060	23424740	TCEA3|ENST00000450454.6	-	23381060,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23381474,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424740	0.928571
NCI_H460_nuclear_fraction	chr12	52221338	52221339	52221338	+	RAMPAGE_only	10	11	15	0.717158	3.456565	chr12	52221238	52221485	SINE|MIR|MIRb	-	chr12	52210929	52223813	LINC00592|NR_027358.1	+	52210929,52212043,52212598,52221976,52223445	52211020,52212156,52213027,52222028,52223813	0.933333
NCI_H460_nuclear_fraction	chr11	123472764	123472765	123472764	+	RAMPAGE_only	6	6	6	0.286863	2.584963	chr11	123472445	123473063	LTR|ERV1|LTR9	-	chr11	123480737	123594838	GRAMD1B|ENST00000633087.1	+	123480737,123577366,123584311,123594081,123594734	123480893,123577577,123584332,123594166,123594838	0.833333
NCI_H460_nuclear_fraction	chr19	55280199	55280251	55280218	-	High_confidence	7	9	28	1.338696	3.726474	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.928571
NCI_H460_nuclear_fraction	chr4	25861722	25861747	25861746	+	High_confidence	44	53	102	4.876677	5.752166	chr4	25861658	25861751	DNA|hAT?|UCON80	+	chr4	25861829	25929545	SMIM20|ENST00000515764.2	+	25861829,25928312,25929153	25862153,25928369,25929545	0.696078
NCI_H460_nuclear_fraction	chr17	35089926	35089938	35089926	-	High_confidence	2	2	6	0.286863	2.584963	chr17	35089759	35089896	SINE|MIR|MIRb	-	chr17	35009111	35089329	RFFL|NR_037713.1	-	35009111,35014739,35016369,35017522,35021370,35026373,35089104	35012149,35014763,35016580,35017606,35021781,35026561,35089329	0.833333
NCI_H460_nuclear_fraction	chr2	221501597	221501637	221501636	-	High_confidence	26	29	85	4.063898	4.899024	chr2	221501442	221501654	SINE|MIR|MIRb	-	chr2	221482439	221501344	EPHA4|ENST00000463446.1	-	221482439,221501016	221482690,221501344	0.611765
NCI_H460_nuclear_fraction	chr9	122414574	122414597	122414574	+	High_confidence	8	8	17	0.812780	3.625000	chr9	122408633	122414773	LINE|L1|L1PA4	-	chr9	122414605	122415115	MSTRG.40717.1	+	122414605	122415115	0.529412
NCI_H460_nuclear_fraction	chr6	33676245	33676278	33676245	+	High_confidence	8	8	21	1.004022	4.201841	chr6	33676226	33676457	SINE|MIR|MIRb	-	chr6	33675596	33696569	MSTRG.34054.4	+	33675596,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33683206,33684019,33684356,33684597,33684773,33685358,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33675856,33676932,33677089,33677629,33678543,33678839,33680133,33680454,33680680,33682644,33683397,33684168,33684465,33684688,33685073,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696569	0.904762
NCI_H460_nuclear_fraction	chr11	4129115	4129136	4129116	+	RAMPAGE_only	5	7	15	0.717158	3.521641	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.933333
NCI_H460_nuclear_fraction	chr1	150729709	150729727	150729726	-	High_confidence	4	4	10	0.478106	2.641604	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150646229	150729940	MSTRG.2432.2	-	150646229,150661813,150663631,150694655,150697186,150698853,150703309,150704117,150706552,150708255,150708893,150711544,150711832,150714084,150714614,150717137,150719472,150729148,150729573	150648748,150661928,150663763,150694850,150698734,150700183,150703393,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150714678,150717282,150719541,150729225,150729940	0.900000
NCI_H460_nuclear_fraction	chr22	39320321	39320382	39320334	-	High_confidence	13	13	51	2.438339	4.724875	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.823529
NCI_H460_nuclear_fraction	chr8	86413572	86413622	86413572	+	High_confidence	8	8	61	2.916444	5.413397	chr8	86413309	86413645	LINE|L2|L2c	-	chr8	86413724	86467959	MSTRG.38756.6	+	86413724,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442620,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86413971,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467959	0.770492
NCI_H460_nuclear_fraction	chr2	200887940	200887981	200887966	-	High_confidence	2	2	11	0.525916	3.321928	chr2	200887775	200888074	SINE|Alu|AluSx1	+	chr2	200871151	200887687	PPIL3|ENST00000415562.5	-	200871151,200876918,200881420,200882341,200885697,200887612	200871521,200877037,200881488,200882382,200885772,200887687	0.727273
NCI_H460_nuclear_fraction	chr7	26194084	26194148	26194122	-	RAMPAGE_only	2	3	22	1.051832	3.884184	chr7	26194113	26194401	SINE|Alu|AluY	+	chr7	26191848	26200746	MSTRG.35815.10	-	26191848,26193250,26193574,26196400,26196556,26196806,26197314,26197621,26197830,26200571	26192577,26193373,26195909,26196481,26196658,26197017,26197461,26197732,26197866,26200746	0.863636
NCI_H460_nuclear_fraction	chr2	177222522	177222525	177222524	+	RAMPAGE_only	3	5	7	0.334674	2.521641	chr2	177222525	177222789	SINE|Alu|AluJb	+	chr2	177212748	177223958	HNRNPA3|ENST00000411529.6	+	177212748,177215538,177215749,177215977,177216502,177216675,177216859,177217704,177219036,177219246,177219407	177212805,177215661,177215896,177216188,177216592,177216771,177216940,177217845,177219159,177219314,177223958	1.000000
NCI_H460_nuclear_fraction	chr13	109272199	109272203	109272202	+	RAMPAGE_only	117	127	198	9.466491	6.260586	chr13	109271794	109272374	LTR|ERV1|LTR9	+	chr13	109269633	109273838	AL161431.1|ENST00000618966.1	+	109269633	109273838	0.939394
NCI_H460_nuclear_fraction	chr2	27978248	27978252	27978248	+	High_confidence	8	8	14	0.669348	3.546594	chr2	27978041	27978454	LTR|ERVL-MaLR|MSTB	+	chr2	27978301	28338826	MSTRG.21999.20	+	27978301,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28338449	27978374,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28338826	0.500000
NCI_H460_nuclear_fraction	chr2	221501544	221501565	221501544	-	High_confidence	10	10	25	1.195264	3.863465	chr2	221501442	221501654	SINE|MIR|MIRb	-	chr2	221482439	221501344	EPHA4|ENST00000463446.1	-	221482439,221501016	221482690,221501344	0.720000
NCI_H460_nuclear_fraction	chrX	111126228	111126655	111126396	+	RAMPAGE_only	13	14	252	12.048262	5.479098	chrX	111126193	111126441	DNA|TcMar-Tigger|Tigger20a	+	chrX	111123103	111131509	MSTRG.42263.22	+	111123103,111124250,111124452	111123278,111124386,111131509	1.000000
NCI_H460_nuclear_fraction	chr18	34557929	34558008	34558007	+	RAMPAGE_only	13	14	104	4.972299	6.081334	chr18	34552378	34558395	LINE|L1|L1PA2	-	chr18	34593317	34891844	DTNA|NM_001198939.1	+	34593317,34679467,34755975,34765960,34794036,34806218,34811958,34815908,34818163,34820790,34827592,34848295,34851830,34858284,34863965,34866110,34875238,34877718,34879550,34882068,34884727,34887765	34593538,34679592,34756043,34766041,34794250,34806304,34812113,34816014,34818330,34820915,34827676,34848383,34851928,34858398,34864062,34866131,34875398,34877808,34879719,34882201,34884776,34891844	0.548077
NCI_H460_nuclear_fraction	chr2	239273591	239273671	239273632	-	High_confidence	9	9	59	2.820823	5.219602	chr2	239273134	239273998	LINE|L1|L1MC5	+	chr2	239134348	239273624	MSTRG.24672.16	-	239134348,239134526,239139683,239144582,239156651,239163802,239176412,239189832,239236592,239273367	239134443,239134643,239139796,239144714,239156773,239163923,239176563,239190077,239236664,239273624	0.779661
NCI_H460_nuclear_fraction	chr7	10973327	10973336	10973335	+	High_confidence	28	28	59	2.820823	5.137732	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.661017
NCI_H460_nuclear_fraction	chr8	128565629	128565798	128565742	-	High_confidence	8	8	104	4.972299	4.986048	chr8	128565705	128566086	LTR|ERVL|LTR47A	-	chr8	128405268	128565563	MSTRG.39221.1	-	128405268,128406775,128414213,128414540,128416715,128421742,128423500,128427657,128561069,128564228	128406633,128406846,128414408,128415992,128420823,128421814,128423593,128428384,128561126,128565563	0.990385
NCI_H460_nuclear_fraction	chr8	61647007	61647022	61647019	-	High_confidence	3	3	10	0.478106	2.947703	chr8	61646951	61647212	LINE|L2|L2a	+	chr8	61625644	61646872	MSTRG.38568.18	-	61625644,61633682,61637946,61638321,61642887,61643385,61643944,61644599,61646749	61626280,61633727,61638003,61638363,61642920,61643452,61644001,61644632,61646872	0.600000
NCI_H460_nuclear_fraction	chr19	571751	571792	571754	-	High_confidence	14	17	35	1.673370	4.149983	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.914286
NCI_H460_nuclear_fraction	chr19	3575628	3575644	3575628	+	RAMPAGE_only	4	4	12	0.573727	3.027169	chr19	3575668	3575971	SINE|Alu|AluSx1	+	chr19	3572978	3579088	HMG20B|ENST00000488973.6	+	3572978,3573691,3575539,3576260,3576552,3576891,3577980,3578508	3573347,3574586,3575660,3576307,3576625,3577107,3578113,3579088	0.833333
NCI_H460_nuclear_fraction	chr2	111863421	111863422	111863421	-	RAMPAGE_only	4	4	6	0.286863	2.584963	chr2	111863226	111863532	SINE|Alu|AluY	+	chr2	111767636	111884164	ANAPC1|NM_022662.3	-	111767636,111772340,111776858,111778674,111780298,111782368,111783896,111784322,111785359,111788233,111792361,111794077,111794232,111794817,111800796,111802427,111803447,111803704,111805801,111808946,111815369,111818839,111821238,111822421,111824965,111825130,111825776,111831285,111833219,111834603,111838437,111843411,111847137,111847724,111850775,111856613,111856795,111858305,111862388,111863674,111864805,111868022,111872629,111873307,111873612,111878809,111880612,111883941	111769406,111772475,111777057,111778770,111780385,111782507,111783964,111784400,111785477,111788320,111792555,111794131,111794323,111794894,111800871,111802506,111803530,111803839,111805893,111809181,111815641,111818958,111821453,111822600,111825036,111825167,111825855,111831434,111833311,111834872,111838512,111843599,111847198,111847865,111850910,111856679,111856886,111858401,111862598,111863895,111864951,111868096,111872712,111873408,111873664,111878971,111880849,111884164	0.666667
NCI_H460_nuclear_fraction	chr8	86413890	86413895	86413890	+	High_confidence	8	11	21	1.004022	3.826875	chr8	86413781	86413929	LINE|L2|L2c	-	chr8	86413724	86467959	MSTRG.38756.6	+	86413724,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442620,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86413971,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467959	0.809524
NCI_H460_nuclear_fraction	chr6	140898419	140898430	140898421	-	High_confidence	215	370	849	40.591168	6.898238	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140898040	MSTRG.35142.2	-	140845957,140895802	140846304,140898040	0.818610
NCI_H460_nuclear_fraction	chr2	153872157	153872201	153872174	+	High_confidence	8	8	42	2.008044	4.704994	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.666667
NCI_H460_nuclear_fraction	chr22	50330653	50330680	50330679	+	RAMPAGE_only	8	11	38	1.816801	4.398857	chr22	50330424	50330745	SINE|Alu|AluY	+	chr22	50343303	50445090	PPP6R2|ENST00000359139.7	+	50343303,50372019,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439697,50439960,50440821,50443865,50444202	50343550,50372150,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50445090	0.657895
NCI_H460_nuclear_fraction	chr19	58381340	58381366	58381361	+	High_confidence	13	13	42	2.008044	4.096568	chr19	58381391	58381508	DNA|hAT-Charlie|MER5B	+	chr19	58381664	58382083	MSTRG.21623.1	+	58381664	58382083	0.714286
NCI_H460_nuclear_fraction	chr13	42780635	42780638	42780635	+	High_confidence	3	3	8	0.382485	2.807355	chr13	42780562	42780986	LINE|CR1|L3	-	chr13	42781549	42791549	FAM216B|NM_182508.2	+	42781549,42784059,42786762,42788590	42781664,42784166,42786883,42791549	0.750000
NCI_H460_nuclear_fraction	chr9	39810033	39810099	39810033	-	High_confidence	90	90	286	13.673821	5.971778	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803576	39810013	MSTRG.39963.3	-	39803576,39809485	39803859,39810013	0.947552
NCI_H460_nuclear_fraction	chr8	143281669	143281690	143281669	-	High_confidence	98	98	312	14.916896	5.371105	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280368	143281610	MSTRG.39325.3	-	143280368,143280881,143281481	143280515,143281325,143281610	0.724359
NCI_H460_nuclear_fraction	chr16	65053813	65053880	65053853	-	RAMPAGE_only	10	14	75	3.585792	4.912426	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.613333
NCI_H460_nuclear_fraction	chr9	125538282	125538302	125538282	+	High_confidence	116	121	180	8.605901	6.027858	chr9	125538091	125538491	LINE|L2|L2	-	chr9	125538288	125542061	MSTRG.40796.1	+	125538288,125541134	125538364,125542061	0.688889
NCI_H460_nuclear_fraction	chr9	97697123	97697146	97697123	-	High_confidence	3	3	11	0.525916	2.646439	chr9	97696883	97697140	LINE|L1|L1M4b	-	chr9	97674908	97697293	XPA|ENST00000462523.5	-	97674908,97682199,97684922,97687095,97689533,97693648,97697120	97675587,97682430,97685040,97687261,97689639,97693759,97697293	0.818182
NCI_H460_nuclear_fraction	chr15	53684583	53684662	53684661	-	High_confidence	86	96	732	34.997332	6.376002	chr15	53684199	53690229	LINE|L1|L1PA3	+	chr15	53515162	53684627	MSTRG.13237.6	-	53515162,53523217,53597078,53609512,53613665,53615425,53665571,53684145	53517754,53523322,53597274,53609592,53613757,53616243,53665768,53684627	0.950820
NCI_H460_nuclear_fraction	chr9	120532622	120532623	120532622	-	High_confidence	4	4	6	0.286863	2.584963	chr9	120532558	120532631	LTR?|LTR?|MamRep605	+	chr9	120518599	120532555	CDK5RAP2|ENST00000482047.1	-	120518599,120524985,120527805,120528743,120529977,120532466	120518645,120525078,120527925,120528797,120530140,120532555	1.000000
NCI_H460_nuclear_fraction	chr7	2242922	2242923	2242922	+	High_confidence	69	71	72	3.442361	5.505037	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.972222
NCI_H460_nuclear_fraction	chr16	11587468	11587475	11587474	-	High_confidence	6	6	10	0.478106	2.503258	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.900000
NCI_H460_nuclear_fraction	chr20	8600634	8600661	8600660	+	High_confidence	83	85	155	7.410637	4.323585	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.851613
NCI_H460_nuclear_fraction	chr20	49283182	49283334	49283217	+	RAMPAGE_only	52	70	261	12.478557	5.308886	chr20	49282370	49284126	LTR|ERV1|HERVIP10B3-int	-	chr20	49280484	49289260	MSTRG.25565.14	+	49280484,49280902,49286218	49280570,49286146,49289260	1.000000
NCI_H460_nuclear_fraction	chr19	17336685	17336686	17336685	+	High_confidence	19	21	25	1.195264	4.142915	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.800000
NCI_H460_nuclear_fraction	chr12	11136064	11136097	11136096	-	High_confidence	2	2	6	0.286863	2.584963	chr12	11136000	11136499	LINE|L1|L1ME3B	-	chr12	11033638	11136097	MSTRG.8277.1	-	11033638,11136041	11033927,11136097	0.666667
NCI_H460_nuclear_fraction	chr6	149896010	149896011	149896010	-	High_confidence	7	7	9	0.430295	2.750000	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.888889
NCI_H460_nuclear_fraction	chr10	4995545	4995598	4995597	-	RAMPAGE_only	4	4	14	0.669348	2.661226	chr10	4995580	4995659	DNA|hAT-Charlie|MER5A	+	chr10	4989433	5003860	AKR1C2|ENST00000421196.7	-	4989433,4991830,4995318,4995755,4998624,5000549,5001513,5003751	4990038,4991913,4995484,4995865,4998747,5000666,5001681,5003860	0.714286
NCI_H460_nuclear_fraction	chr13	109269539	109269567	109269559	-	High_confidence	719	890	5177	247.515285	7.796083	chr13	109269432	109270085	LTR|ERV1|HERVH-int	+	chr13	109201114	109269592	MSTRG.10853.3	-	109201114,109267733,109268785	109201487,109267840,109269592	0.929689
NCI_H460_nuclear_fraction	chr6	165576623	165576670	165576657	-	High_confidence	7	7	26	1.243075	4.334963	chr6	165576342	165576862	LINE|L2|L2	+	chr6	165333024	165576448	PDE10A|ENST00000650117.1	-	165333024,165336122,165339277,165343390,165379193,165388297,165392645,165395180,165396316,165413500,165416188,165418634,165428657,165430286,165431421,165432973,165435236,165448927,165450241,165482314,165543439,165576411	165333127,165336211,165339358,165343502,165379366,165388453,165392796,165395264,165396459,165413687,165416281,165418777,165428709,165430345,165431472,165433129,165435377,165448977,165450362,165482343,165543568,165576448	0.500000
NCI_H460_nuclear_fraction	chr10	6779598	6779631	6779630	+	High_confidence	5	5	21	1.004022	4.021928	chr10	6779419	6779969	LTR|ERVL|MLT2A2	+	chr10	6779597	6842906	LINC00707|NR_038291.1	+	6779597,6781303,6833642,6837973,6840390	6779887,6781486,6833688,6838008,6842906	0.666667
NCI_H460_nuclear_fraction	chr8	97719140	97719174	97719173	+	RAMPAGE_only	3	3	15	0.717158	2.950212	chr8	97719213	97719522	SINE|Alu|AluSx1	+	chr8	97644545	97725243	MTDH|ENST00000519934.5	+	97644545,97661071,97686667,97687428,97689037,97690951,97706625,97713661,97719048,97722878,97724599	97644887,97661173,97686752,97687605,97689103,97691188,97706750,97713769,97719189,97723035,97725243	0.866667
NCI_H460_nuclear_fraction	chr1	196786510	196786555	196786536	+	RAMPAGE_only	21	21	123	5.880699	5.687938	chr1	196780803	196786955	LINE|L1|L1PA3	-	chr1	196774812	196793488	CFHR3|ENST00000367427.7	+	196774812,196779161,196779796,196788215,196788744,196790044,196793316	196774944,196779356,196779973,196788398,196788944,196790227,196793488	0.861789
NCI_H460_nuclear_fraction	chr17	60887025	60887094	60887093	+	High_confidence	27	29	236	11.283293	7.073605	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.610169
NCI_H460_nuclear_fraction	chr15	98897650	98897671	98897650	+	High_confidence	9	10	18	0.860590	3.616875	chr15	98897562	98897746	SINE|Alu|AluJr4	-	chr15	98897479	98958181	MSTRG.14060.16	+	98897479,98899476,98908684,98911314,98913043,98915963,98916671,98922147,98923875,98924524,98929557,98930234,98934823,98935315,98939200,98942922,98948573,98957060	98897488,98899621,98908899,98911441,98913282,98916131,98916876,98922431,98924012,98924684,98929660,98930305,98935053,98935426,98939360,98943052,98948708,98958181	0.555556
NCI_H460_nuclear_fraction	chr8	128581007	128581065	128581007	-	RAMPAGE_only	5	5	42	2.008044	3.533783	chr8	128580930	128581051	SINE|MIR|MIRc	+	chr8	128576397	128582150	MSTRG.39219.1	-	128576397,128582088	128582048,128582150	0.952381
NCI_H460_nuclear_fraction	chr2	202965938	202966005	202965938	+	RAMPAGE_only	2	2	16	0.764969	3.506891	chr2	202965833	202966297	LTR|ERVL-MaLR|MLT1F2	-	chr2	202912734	202983990	CARF|NM_001322428.1	+	202912734,202917876,202941859,202942739,202952558,202954004,202955673,202961236,202966977,202969918,202971504,202974333,202977268,202981554,202982071,202983505	202913114,202918043,202941980,202942967,202952679,202954134,202955758,202961426,202967098,202970062,202971738,202974496,202977332,202981685,202982441,202983990	0.562500
NCI_H460_nuclear_fraction	chr18	976648	976772	976648	+	High_confidence	29	29	194	9.275249	5.335264	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976696	1159311	AP005328.1|ENST00000579835.5	+	976696,1061462,1133842,1137813,1159178	976895,1061535,1133894,1137864,1159311	0.603093
NCI_H460_nuclear_fraction	chr2	115144929	115144933	115144929	-	RAMPAGE_only	2	2	6	0.286863	2.584963	chr2	115144845	115145008	LINE|L1|L1MEa	-	chr2	115144047	115161343	DPP10-AS1|NR_036580.1	-	115144047,115144858,115161103	115144368,115145027,115161343	0.833333
NCI_H460_nuclear_fraction	chr5	72846148	72846182	72846148	+	RAMPAGE_only	2	3	16	0.764969	3.189898	chr5	72846047	72846453	LINE|L1|L1ME3A	+	chr5	72848102	72914388	TNPO1|NM_153188.2	+	72848102,72848384,72851243,72855773,72861807,72865595,72872638,72875614,72877227,72882466,72883063,72887069,72888077,72889785,72891809,72893138,72893376,72893615,72896457,72897055,72900005,72900973,72903708,72905302,72908708	72848251,72848498,72851319,72855923,72861914,72865729,72872720,72875737,72877346,72882527,72883232,72887222,72888303,72889957,72891896,72893246,72893535,72893703,72896556,72897151,72900081,72901073,72903783,72905445,72914388	0.875000
NCI_H460_nuclear_fraction	chr5	115835983	115836019	115836004	-	RAMPAGE_only	4	4	13	0.621537	3.180833	chr5	115835009	115836012	LINE|L1|HAL1M8	-	chr5	115830672	115841565	MSTRG.32430.3	-	115830672,115831693,115832601,115840817	115831387,115831863,115837764,115841565	1.000000
NCI_H460_nuclear_fraction	chr7	152438230	152438250	152438230	+	RAMPAGE_only	3	3	7	0.334674	2.521641	chr7	152438083	152438663	DNA|TcMar-Tigger|Tigger20a	+	chr7	152436925	152443027	FABP5P3|ENST00000650213.1	+	152436925,152442038	152437028,152443027	0.857143
NCI_H460_nuclear_fraction	chr17	47067498	47067534	47067498	-	High_confidence	258	294	999	47.762753	6.007226	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.901902
NCI_H460_nuclear_fraction	chr22	50757126	50757134	50757133	+	High_confidence	4	4	9	0.430295	2.750000	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.666667
NCI_H460_nuclear_fraction	chr11	102615935	102615962	102615956	+	RAMPAGE_only	7	7	32	1.529938	4.389365	chr11	102615883	102616086	DNA|hAT-Tip100|MER115	-	chr11	102607366	102628070	AP000851.1|ENST00000542119.1	+	102607366,102626658,102627138,102627708	102607452,102626780,102627311,102628070	0.781250
NCI_H460_nuclear_fraction	chr12	123181172	123181186	123181172	-	RAMPAGE_only	3	3	9	0.430295	2.750000	chr12	123180971	123181130	SINE|MIR|MIRc	-	chr12	123163768	123176716	MPHOSPH9|ENST00000606321.1	-	123163768,123165301,123166654,123176687	123164090,123165477,123166789,123176716	0.666667
NCI_H460_nuclear_fraction	chr4	41359605	41359607	41359606	+	High_confidence	1059	1236	1724	82.425411	6.500358	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.671694
NCI_H460_nuclear_fraction	chr12	123390725	123390761	123390760	+	High_confidence	3	3	10	0.478106	3.321928	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.900000
NCI_H460_nuclear_fraction	chr11	119007649	119007670	119007669	+	RAMPAGE_only	2	2	7	0.334674	2.521641	chr11	119007481	119007786	SINE|Alu|AluJb	-	chr11	118983159	119015428	MSTRG.7705.1	+	118983159,119002426,119005589,119011220,119011938,119012148,119013231,119014993,119015306	118983205,119005220,119010830,119011311,119012003,119012254,119013262,119015083,119015428	1.000000
NCI_H460_nuclear_fraction	chr2	200889279	200889318	200889279	-	High_confidence	18	18	106	5.067920	5.858846	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889276	PPIL3|ENST00000465823.5	-	200870955,200876918,200881420,200885697,200887612,200888955	200871521,200877037,200881488,200885772,200887685,200889276	0.735849
NCI_H460_nuclear_fraction	chr12	110440311	110440320	110440311	-	RAMPAGE_only	3	3	11	0.525916	2.846439	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.636364
NCI_H460_nuclear_fraction	chr7	102973485	102973503	102973491	+	High_confidence	19	21	72	3.442361	4.797084	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973436	102978667	NFE4|ENST00000638942.1	+	102973436,102975890,102978380	102973771,102976230,102978667	0.652778
NCI_H460_nuclear_fraction	chr10	93431409	93431422	93431421	-	RAMPAGE_only	9	10	19	0.908401	3.826875	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.894737
NCI_H460_nuclear_fraction	chr1	78620056	78620058	78620056	+	High_confidence	19	37	39	1.864612	4.736216	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.564103
NCI_H460_nuclear_fraction	chr1	28617955	28617959	28617958	-	RAMPAGE_only	3	3	7	0.334674	2.584963	chr1	28617880	28617910	SINE|MIR|MIR	-	chr1	28603100	28643005	TAF12|ENST00000263974.4	-	28603100,28605371,28613246,28617952,28621913,28642654	28603574,28605460,28613361,28618030,28622165,28643005	0.857143
NCI_H460_nuclear_fraction	chr6	118651542	118651626	118651563	-	High_confidence	32	32	169	8.079985	6.375856	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118460771	118651857	CEP85L|NM_001042475.2	-	118460771,118469071,118470536,118479870,118480395,118481778,118483705,118491685,118511297,118523801,118565528,118632452,118651196	118465568,118469303,118470644,118479921,118480513,118481933,118483858,118491865,118511415,118523920,118566316,118632611,118651857	0.964497
NCI_H460_nuclear_fraction	chr2	237769034	237769060	237769034	+	High_confidence	8	8	18	0.860590	3.392147	chr2	237769006	237769167	SINE|MIR|MIR	+	chr2	237768603	237780309	MSTRG.24633.16	+	237768603,237769942,237772865,237774357,237775540,237779421	237769818,237772198,237772945,237774462,237775600,237780309	1.000000
NCI_H460_nuclear_fraction	chr4	188109338	188109379	188109378	-	High_confidence	21	22	93	4.446382	5.427944	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188091372	188109591	MSTRG.31279.5	-	188091372,188097060,188097323,188101055,188104836,188105179,188109242	188091941,188097161,188099175,188101250,188104932,188105590,188109591	0.838710
NCI_H460_nuclear_fraction	chr8	62164667	62164677	62164676	-	High_confidence	3	3	7	0.334674	2.584963	chr8	62164495	62164691	LINE|L1|L1PB1	+	chr8	62135270	62164847	MSTRG.38573.2	-	62135270,62164568	62135746,62164847	0.857143
NCI_H460_nuclear_fraction	chr9	94094637	94094658	94094657	+	High_confidence	5	6	16	0.764969	3.506891	chr9	94089082	94095103	LINE|L1|L1PA2	-	chr9	94094654	94109369	MSTRG.40316.6	+	94094654,94095316,94097320,94104274,94107827	94094758,94095454,94101751,94104385,94109369	0.687500
NCI_H460_nuclear_fraction	chr16	65232012	65232052	65232051	+	High_confidence	5785	5827	14460	691.340742	7.306147	chr16	65232015	65232173	LTR|ERV1|HERVH-int	-	chr16	65232060	65400380	MSTRG.15430.5	+	65232060,65371096,65392993,65395982	65233403,65371185,65393207,65400380	0.986445
NCI_H460_nuclear_fraction	chr5	614603	614635	614603	+	High_confidence	6	6	21	1.004022	3.463281	chr5	614587	614660	SINE|Alu|AluY	-	chr5	614562	642174	MSTRG.31320.7	+	614562,618989,620068,624470,633768,635371,637516,639088,640407,641202,642019	614681,619117,620261,624579,633947,635584,637818,639224,641137,641867,642174	0.761905
NCI_H460_nuclear_fraction	chr1	21291325	21291326	21291325	-	High_confidence	9	9	9	0.430295	2.725481	chr1	21291307	21291405	SINE|MIR|MIRc	-	chr1	21217246	21290489	ECE1|NM_001397.2	-	21217246,21221746,21225249,21227158,21227930,21233557,21235849,21236745,21238133,21244988,21247220,21255946,21257524,21258692,21260270,21272698,21279190,21290069,21290363	21220131,21221842,21225440,21227226,21228041,21233661,21235927,21236844,21238244,21245103,21247363,21256138,21257590,21258839,21260392,21272911,21279332,21290156,21290489	0.555556
NCI_H460_nuclear_fraction	chr6	13794241	13794275	13794241	-	RAMPAGE_only	7	7	39	1.864612	3.493427	chr6	13794117	13794268	SINE|Alu|FLAM_C	-	chr6	13787133	13801345	MCUR1|ENST00000607303.1	-	13787133,13788645,13791877,13793893,13798832,13800340,13801287	13787355,13788704,13791992,13793947,13798904,13800382,13801345	0.897436
NCI_H460_nuclear_fraction	chr2	231072239	231072263	231072239	+	RAMPAGE_only	2	2	8	0.382485	2.750000	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231066903	231075566	PSMD1|ENST00000444007.1	+	231066903,231070024,231072332,231075510	231067111,231070168,231072415,231075566	0.750000
NCI_H460_nuclear_fraction	chr7	32043848	32043875	32043873	-	High_confidence	23	38	145	6.932532	6.491859	chr7	32043807	32043898	SINE|MIR|MIRc	+	chr7	31783533	32043893	MSTRG.35923.7	-	31783533,31809030,31815923,31823072,31824866,31828291,31837179,31837869,31847967,31850640,31864941,31873291,31877969,31878995,31880746,32043787	31790259,31809108,31816154,31823248,31824987,31828373,31837300,31837971,31848096,31850741,31865082,31873408,31878036,31879178,31880860,32043893	0.675862
NCI_H460_nuclear_fraction	chr8	29735222	29735275	29735274	-	High_confidence	28	29	98	4.685435	5.992061	chr8	29735013	29735262	SINE|MIR|MIR	-	chr8	29724880	29735247	MSTRG.38301.4	-	29724880,29726155,29735170	29725019,29726423,29735247	0.673469
NCI_H460_nuclear_fraction	chr3	134485443	134485468	134485443	-	High_confidence	1	1	10	0.478106	2.947703	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.600000
NCI_H460_nuclear_fraction	chr2	233448842	233448859	233448858	+	RAMPAGE_only	10	11	40	1.912423	4.859641	chr2	233448452	233449071	LTR|ERV1|MER51A	-	chr2	233438312	233472104	DGKD|ENST00000430834.1	+	233438312,233441886,233445622,233446711,233448086,233448275,233449102,233449981,233450921,233451963,233454356,233454762,233456898,233457220,233458283,233459756,233460193,233462347,233462642,233464163,233467085,233468422,233469370	233438379,233441995,233445762,233446796,233448181,233448375,233449376,233450131,233451050,233452060,233454464,233454873,233456995,233457328,233458397,233459891,233460345,233462459,233462735,233464283,233467203,233468553,233472104	0.900000
NCI_H460_nuclear_fraction	chr9	98045583	98045605	98045604	+	High_confidence	23	23	67	3.203308	5.206755	chr9	98045312	98045711	LTR|ERV1|MER57B1	+	chr9	98045571	98048331	MSTRG.40443.1	+	98045571	98048331	0.865672
NCI_H460_nuclear_fraction	chr18	54945500	54945536	54945516	-	RAMPAGE_only	10	11	23	1.099643	3.969002	chr18	54945305	54945474	SINE|MIR|MIRc	-	chr18	54901510	54942950	CCDC68|ENST00000432185.5	-	54901510,54907785,54917912,54919270,54928799,54934819,54936832,54937956,54940996,54942674	54904415,54907862,54917996,54919376,54928882,54934948,54936958,54938097,54941083,54942950	0.956522
NCI_H460_nuclear_fraction	chr8	128406189	128406564	128406495	-	RAMPAGE_only	39	41	894	42.742643	6.080034	chr8	128406203	128406516	LTR|ERVL-MaLR|MLT1H	-	chr8	128405268	128427916	LINC00824|ENST00000520206.5	-	128405268,128406775,128414213,128421742,128423500,128427657	128406633,128406846,128414408,128421814,128423593,128427916	0.996644
NCI_H460_nuclear_fraction	chr3	135965670	135965742	135965723	+	High_confidence	11	17	88	4.207330	5.686915	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.943182
NCI_H460_nuclear_fraction	chr20	49282488	49282566	49282519	+	RAMPAGE_only	2	2	19	0.908401	3.725481	chr20	49282370	49284126	LTR|ERV1|HERVIP10B3-int	-	chr20	49280484	49289260	MSTRG.25565.14	+	49280484,49280902,49286218	49280570,49286146,49289260	0.947368
NCI_H460_nuclear_fraction	chr5	93563985	93564018	93563985	-	RAMPAGE_only	8	11	42	2.008044	4.993392	chr5	93563820	93564150	SINE|Alu|AluY	+	chr5	93409358	93570793	NR2F1-AS1|ENST00000607797.5	-	93409358,93553760,93554873,93563363,93569889	93411509,93553863,93554995,93563463,93570793	0.595238
NCI_H460_nuclear_fraction	chr7	158863386	158863401	158863388	+	RAMPAGE_only	8	14	30	1.434317	4.521641	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.766667
NCI_H460_nuclear_fraction	chr12	64439281	64439315	64439314	+	RAMPAGE_only	3	3	10	0.478106	2.521928	chr12	64439324	64439679	DNA|hAT-Charlie|Charlie4a	+	chr12	64404372	64448684	XPOT|NM_007235.4	+	64404372,64409961,64414906,64416697,64418045,64418875,64420069,64420352,64421234,64423004,64423181,64424598,64425037,64425337,64425814,64428050,64430048,64431537,64433413,64434506,64434793,64435626,64439243,64445074,64448104	64404804,64410095,64414989,64416754,64418115,64419094,64420254,64420521,64421471,64423043,64423244,64424723,64425182,64425457,64425909,64428120,64430287,64431823,64433603,64434623,64434909,64435674,64439315,64445131,64448684	1.000000
NCI_H460_nuclear_fraction	chr3	51199048	51199060	51199059	+	RAMPAGE_only	10	10	23	1.099643	4.262692	chr3	51199048	51205178	LINE|L1|L1PA3	+	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.695652
NCI_H460_nuclear_fraction	chr17	69175754	69175788	69175787	-	High_confidence	5	7	14	0.669348	3.238901	chr17	69175735	69175831	DNA|TcMar-Tigger|MER44B	-	chr17	69148498	69175781	ABCA10|ENST00000519732.5	-	69148498,69149032,69149983,69152042,69152361,69153304,69153470,69153830,69154234,69155018,69155804,69156831,69164073,69164963,69174280,69175405,69175618	69148925,69149088,69150063,69152183,69152481,69153399,69153546,69154009,69154326,69155136,69155925,69156923,69164154,69165083,69174394,69175513,69175781	0.714286
NCI_H460_nuclear_fraction	chr5	123382144	123382174	123382144	-	RAMPAGE_only	3	3	12	0.573727	2.913977	chr5	123381886	123382104	LINE|L1|L1ME4b	-	chr5	123344885	123385705	MSTRG.32489.2	-	123344885,123349943,123364495,123372649,123377373,123378335,123382110,123382736,123382985,123384950	123346753,123350089,123364594,123372772,123377551,123378428,123382200,123382889,123383082,123385705	0.750000
NCI_H460_nuclear_fraction	chr7	87825763	87825764	87825763	+	RAMPAGE_only	5	6	7	0.334674	2.807355	chr7	87824530	87826124	LTR|ERVL-MaLR|THE1B-int	+	chr7	87700415	87832293	RUNDC3B|ENST00000312373.12	+	87700415,87710569,87739790,87741498,87770580,87777797,87816140,87829884	87700554,87710655,87739880,87741579,87770749,87777955,87816262,87832293	0.571429
NCI_H460_nuclear_fraction	chr12	70550090	70550108	70550107	+	High_confidence	3	3	13	0.621537	2.507380	chr12	70549928	70550495	LINE|L2|L2c	-	chr12	70550320	70570114	MSTRG.9196.1	+	70550320,70569497	70550447,70570114	0.692308
NCI_H460_nuclear_fraction	chr8	15417190	15417197	15417190	+	High_confidence	163	166	269	12.861041	7.154027	chr8	15417004	15417387	LTR|ERVL-MaLR|MSTA	+	chr8	15417214	15764459	MSTRG.38067.4	+	15417214,15483385,15623079,15650696,15659506,15662155,15673746,15730665,15743537,15748374,15764202	15417305,15483483,15623249,15650814,15659647,15662296,15673836,15730729,15743612,15748465,15764459	0.557621
NCI_H460_nuclear_fraction	chr17	2975621	2975665	2975660	+	High_confidence	52	75	250	11.952641	6.974552	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975627	3037738	MSTRG.16257.6	+	2975627,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2975775,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037738	0.556000
NCI_H460_nuclear_fraction	chr2	110642789	110642790	110642789	-	High_confidence	46	47	47	2.247096	4.629662	chr2	110642693	110642986	SINE|Alu|AluJr	-	chr2	110641325	110642790	BUB1|ENST00000478175.1	-	110641325,110641641,110642118,110642448	110641464,110641803,110642234,110642790	0.978723
NCI_H460_nuclear_fraction	chr6	162057007	162057010	162057009	-	High_confidence	6	10	14	0.669348	3.392747	chr6	162056564	162057090	LTR|ERVL|MER68	+	chr6	161951889	162056641	MSTRG.35387.10	-	161951889,161973301,162054090,162056449	161951914,161973417,162054174,162056641	0.571429
NCI_H460_nuclear_fraction	chr8	61665574	61665620	61665574	-	RAMPAGE_only	3	3	27	1.290885	4.430632	chr8	61665333	61665592	LINE|L1|HAL1	-	chr8	61664724	61689774	ASPH|ENST00000389204.8	-	61664724,61668233,61680967,61682438,61684038,61689672	61665606,61668275,61681036,61682483,61684188,61689774	0.962963
NCI_H460_nuclear_fraction	chr18	63702463	63702530	63702493	+	High_confidence	33	33	70	3.346739	5.170434	chr18	63702310	63702603	SINE|Alu|AluSg	+	chr18	63702303	63723893	SERPINB11|NM_080475.3	+	63702303,63702850,63710178,63711334,63712564,63716034,63720012,63720830,63722994	63702377,63703006,63710361,63711394,63712693,63716152,63720155,63720986,63723893	0.771429
NCI_H460_nuclear_fraction	chr18	66596208	66596262	66596255	-	RAMPAGE_only	47	47	229	10.948619	4.998033	chr18	66595018	66596800	LINE|L1|L1PA15	+	chr18	66505044	66604088	CDH19|ENST00000540086.5	-	66505044,66529844,66534985,66543970,66544718,66551093,66554404,66568415,66572009,66603953	66505302,66529966,66535107,66544224,66544903,66551258,66554524,66568710,66572316,66604088	0.965066
NCI_H460_nuclear_fraction	chr4	99906545	99906588	99906545	-	High_confidence	3	3	13	0.621537	3.238901	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.846154
NCI_H460_nuclear_fraction	chr19	48154044	48154179	48154178	-	High_confidence	14	15	134	6.406615	5.938037	chr19	48154127	48154256	SINE|MIR|MIR	+	chr19	48149802	48154207	LIG1|ENST00000595758.5	-	48149802,48150087,48151231,48153871	48149841,48150210,48151339,48154207	0.820896
NCI_H460_nuclear_fraction	chr15	89041187	89041228	89041221	+	High_confidence	39	41	149	7.123774	6.255680	chr15	89040910	89041343	LTR|ERVL-MaLR|MLT1H2	+	chr15	89041009	89079686	MSTRG.13880.3	+	89041009,89070090,89075295,89079433	89041300,89070191,89075384,89079686	0.523490
NCI_H460_nuclear_fraction	chr14	59787319	59787362	59787319	-	RAMPAGE_only	14	14	30	1.434317	4.306891	chr14	59787276	59787498	SINE|MIR|MIRb	+	chr14	59596327	59870752	RTN1|ENST00000611068.1	-	59596327,59603064,59603211,59603851,59605367,59607284,59726918,59745707,59870389,59870643	59596787,59603123,59603258,59603921,59605506,59607492,59727668,59746481,59870420,59870752	0.533333
NCI_H460_nuclear_fraction	chr1	22428841	22428909	22428861	+	High_confidence	4	4	23	1.099643	4.297079	chr1	22428699	22428944	LTR|ERVL-MaLR|MLT1J	+	chr1	22428837	22511763	ZBTB40|ENST00000650433.1	+	22428837,22489879,22491399,22506048,22508000,22508529,22509099,22511178,22511675	22429014,22490645,22491533,22506241,22508137,22508731,22509233,22511347,22511763	0.608696
NCI_H460_nuclear_fraction	chr5	150209138	150209208	150209176	+	RAMPAGE_only	52	54	182	8.701522	5.340770	chr5	150209029	150209231	SINE|MIR|MIRb	-	chr5	150189956	150211072	SLC6A7|ENST00000230671.6	+	150189956,150194727,150196715,150197041,150199227,150201088,150202346,150202578,150203666,150203906,150204531,150204826,150205455,150209405	150190360,150194911,150196847,150197276,150199366,150201223,150202450,150202703,150203779,150204038,150204631,150204927,150205623,150211072	0.994505
NCI_H460_nuclear_fraction	chr3	187890645	187890666	187890657	-	High_confidence	25	27	83	3.968277	4.874259	chr3	187890220	187896214	LINE|L1|L1PA2	+	chr3	187890212	187890650	MSTRG.29444.1	-	187890212,187890565	187890335,187890650	0.698795
NCI_H460_nuclear_fraction	chr17	1115399	1115412	1115399	-	RAMPAGE_only	5	5	12	0.573727	3.022055	chr17	1115307	1115433	LINE|L2|L2b	+	chr17	1003517	1109100	ABR|NM_001092.4	-	1003517,1007164,1009678,1010728,1011845,1012687,1013104,1050049,1050536,1056034,1056997,1057969,1058744,1067076,1069968,1072613,1073624,1079329,1083519,1091664,1100636,1108933	1006169,1007312,1009784,1010863,1011985,1012797,1013164,1050181,1050634,1056109,1057102,1058045,1058867,1067242,1070090,1072754,1073677,1079390,1083627,1091850,1100735,1109100	0.750000
NCI_H460_nuclear_fraction	chr4	39305443	39305444	39305443	-	RAMPAGE_only	7	8	10	0.478106	3.169925	chr4	39305324	39305624	SINE|Alu|AluSx3	+	chr4	39300315	39303193	RFC1|ENST00000505077.1	-	39300315,39302277,39302499,39302736,39303059	39300414,39302376,39302595,39302874,39303193	0.600000
NCI_H460_nuclear_fraction	chr1	189036777	189036790	189036789	+	RAMPAGE_only	3	3	7	0.334674	2.584963	chr1	189036726	189036993	LINE|L1|L1M4b	-	chr1	189031706	189039928	MSTRG.3190.7	+	189031706,189035164	189035130,189039928	0.857143
NCI_H460_nuclear_fraction	chr5	32403105	32403221	32403105	-	RAMPAGE_only	8	8	58	2.773013	4.765131	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.931034
NCI_H460_nuclear_fraction	chr8	128564750	128564971	128564932	-	High_confidence	8	8	131	6.263184	5.641922	chr8	128564906	128565249	LINE|L2|L2b	-	chr8	128559027	128564679	LINC00824|NR_121673.1	-	128559027,128560239,128561069,128564228	128559576,128560548,128561126,128564679	0.977099
NCI_H460_nuclear_fraction	chr2	6918668	6918680	6918679	-	High_confidence	6	6	15	0.717158	3.773557	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.600000
NCI_H460_nuclear_fraction	chr4	81154213	81154222	81154221	-	High_confidence	72	80	145	6.932532	5.964460	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.758621
NCI_H460_nuclear_fraction	chrX	107156150	107156173	107156166	-	RAMPAGE_only	5	5	10	0.478106	2.947703	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.700000
NCI_H460_nuclear_fraction	chr6	137738904	137738905	137738904	-	High_confidence	64	66	70	3.346739	4.939463	chr6	137738750	137738945	SINE|MIR|MIRc	-	chr6	137730169	137738983	LINC02539|ENST00000419220.1	-	137730169,137738708	137730597,137738983	0.914286
NCI_H460_nuclear_fraction	chr11	43881166	43881167	43881166	+	High_confidence	4	4	6	0.286863	2.584963	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	1.000000
NCI_H460_nuclear_fraction	chr20	8600698	8600726	8600707	+	High_confidence	40	40	219	10.470513	5.233613	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.831050
NCI_H460_nuclear_fraction	chr8	100336260	100336435	100336308	+	High_confidence	70	74	316	15.108138	6.012586	chr8	100336300	100336359	DNA|hAT-Charlie|MER102b	-	chr8	100336556	100336813	MSTRG.38939.1	+	100336556	100336813	0.626582
NCI_H460_nuclear_fraction	chr12	71118212	71118291	71118233	-	High_confidence	11	13	97	4.637625	5.472766	chr12	71118072	71124103	LINE|L1|L1PA2	+	chr12	71110223	71118247	MSTRG.9200.2	-	71110223,71115849,71118069	71110670,71115958,71118247	0.639175
NCI_H460_nuclear_fraction	chr4	122913317	122913320	122913317	-	High_confidence	29	38	51	2.438339	4.944236	chr4	122913129	122913485	LTR|ERVL-MaLR|MLT1A0	-	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	0.882353
NCI_H460_nuclear_fraction	chr4	149915925	149916019	149915925	-	RAMPAGE_only	6	7	52	2.486149	4.355085	chr4	149915524	149921557	LINE|L1|L1PA3	+	chr4	149351902	149815859	IQCM|ENST00000636793.1	-	149351902,149433395,149548454,149553142,149563691,149587929,149621128,149682117,149686377,149733243,149735375,149742654,149815310,149815599	149352066,149433557,149548589,149553287,149563890,149587997,149621244,149682206,149686468,149733508,149735458,149742739,149815348,149815859	0.653846
NCI_H460_nuclear_fraction	chr5	132347679	132347717	132347679	-	RAMPAGE_only	4	5	12	0.573727	2.845351	chr5	132346225	132349908	LINE|L1|L1P2	-	chr5	132311512	132369648	MSTRG.32568.2	-	132311512,132332188,132334784,132345639,132360079,132369416	132312253,132332310,132334926,132349957,132366781,132369648	0.916667
NCI_H460_nuclear_fraction	chr10	69232557	69232593	69232557	+	RAMPAGE_only	16	18	106	5.067920	5.592432	chr10	69232519	69232745	SINE|MIR|MIRb	+	chr10	69220302	69267559	HKDC1|ENST00000354624.5	+	69220302,69227206,69232763,69233013,69239041,69240651,69243181,69246078,69247359,69248423,69250289,69250532,69257035,69257326,69258775,69261138,69265584,69266609	69220498,69227369,69232912,69233133,69239137,69240751,69243365,69246234,69247593,69248728,69250435,69250652,69257131,69257426,69258959,69261294,69265818,69267559	0.905660
NCI_H460_nuclear_fraction	chr2	29130347	29130425	29130347	-	High_confidence	102	102	276	13.195715	5.563596	chr2	29130249	29130396	LTR|ERV1|LTR109A2	-	chr2	29127402	29130013	MSTRG.22040.2	-	29127402,29129570	29127814,29130013	0.909420
NCI_H460_nuclear_fraction	chr20	35732262	35732515	35732336	-	High_confidence	13	13	161	7.697501	5.260392	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.968944
NCI_H460_nuclear_fraction	chr5	34244753	34244816	34244815	-	RAMPAGE_only	19	23	120	5.737268	5.337069	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34218343	AC138409.2|ENST00000507274.1	-	34175821,34179012,34182679,34218294	34175957,34179097,34182867,34218343	0.525000
NCI_H460_nuclear_fraction	chr2	227888380	227888381	227888380	+	High_confidence	6	8	9	0.430295	2.750000	chr2	227888311	227888642	LTR|ERVL|ERV3-16A3_LTR	-	chr2	227888380	227921657	MSTRG.24471.6	+	227888380,227889275,227889855,227891254,227893794,227898181,227903001,227904928,227906235,227907137,227918779,227921398	227888683,227889573,227890000,227891313,227893917,227898281,227903109,227905035,227906338,227907252,227918856,227921657	0.777778
NCI_H460_nuclear_fraction	chr3	139344535	139344548	139344547	+	High_confidence	212	212	540	25.817704	6.096895	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.844444
NCI_H460_nuclear_fraction	chr1	188888763	188888785	188888784	-	High_confidence	5	5	9	0.430295	2.947703	chr1	188888422	188889119	DNA|TcMar-Tigger|MER44D	+	chr1	188869476	188888569	MSTRG.3167.4	-	188869476,188887240,188888393	188875882,188887386,188888569	0.777778
NCI_H460_nuclear_fraction	chr9	129568641	129568676	129568675	-	High_confidence	8	8	38	1.816801	4.280682	chr9	129568535	129568690	SINE|MIR|MIRb	-	chr9	129567712	129568632	MSTRG.40946.1	-	129567712	129568632	0.894737
NCI_H460_nuclear_fraction	chr18	12419867	12419892	12419888	+	High_confidence	10	10	41	1.960233	5.046457	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12419891	12427322	PRELID3A|ENST00000589952.5	+	12419891,12420324,12421539,12427040,12427220	12419947,12420493,12421629,12427111,12427322	0.560976
NCI_H460_nuclear_fraction	chr4	188109602	188109603	188109602	-	High_confidence	26	29	35	1.673370	4.741364	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188086831	188109603	MSTRG.31279.1	-	188086831,188091658,188097060,188101055,188104836,188105179,188109242	188091039,188091941,188099175,188101250,188104932,188105587,188109603	0.885714
NCI_H460_nuclear_fraction	chr3	123508907	123508932	123508931	-	RAMPAGE_only	18	18	47	2.247096	3.861385	chr3	123508744	123509100	LTR|ERVL-MaLR|MLT1A	-	chr3	123494515	123585077	HACD2|NM_198402.3	-	123494515,123500514,123502559,123528385,123567761,123582211,123584872	123494970,123500693,123502681,123528474,123567780,123582329,123585077	0.872340
NCI_H460_nuclear_fraction	chrX	103685567	103685614	103685597	-	High_confidence	2	2	10	0.478106	2.947703	chrX	103685462	103685634	LINE|L1|L1MC5	-	chrX	103676915	103685505	MORF4L2|ENST00000474653.5	-	103676915,103678498,103685170	103677051,103678600,103685505	0.600000
NCI_H460_nuclear_fraction	chr5	91313685	91313699	91313698	-	High_confidence	5	5	11	0.525916	3.277613	chr5	91313501	91313807	SINE|Alu|AluY	+	chr5	91310626	91313675	LUCAT1|ENST00000649539.1	-	91310626,91313077,91313637	91312495,91313229,91313675	0.818182
NCI_H460_nuclear_fraction	chr1	45522822	45522859	45522858	-	High_confidence	624	624	1092	52.209135	7.482883	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.870879
NCI_H460_nuclear_fraction	chr14	91462169	91462210	91462209	-	High_confidence	2	2	10	0.478106	3.121928	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.800000
NCI_H460_nuclear_fraction	chr10	94358680	94358694	94358680	-	RAMPAGE_only	3	3	7	0.334674	2.584963	chr10	94358586	94358977	LINE|L2|L2	+	chr10	94333225	94362939	NOC3L|ENST00000371361.3	-	94333225,94334633,94337776,94338607,94339738,94340275,94340432,94341672,94344414,94344852,94346424,94349249,94350112,94352309,94352895,94354962,94356534,94357173,94358082,94361664,94362829	94334305,94334718,94337874,94338736,94339920,94340347,94340496,94341745,94344515,94344933,94346556,94349378,94350288,94352403,94353057,94355093,94356591,94357331,94358215,94361872,94362939	0.571429
NCI_H460_nuclear_fraction	chr15	52100532	52100566	52100538	-	High_confidence	118	175	599	28.638527	7.808100	chr15	52100279	52100861	LTR|ERVL|MER73	-	chr15	52056674	52100523	AC023906.5|ENST00000558607.1	-	52056674,52100469	52057255,52100523	0.595993
NCI_H460_nuclear_fraction	chr15	30624357	30624365	30624364	+	High_confidence	21	35	68	3.251118	4.214407	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624393	30635387	MSTRG.12591.1	+	30624393,30624722,30625353,30630702,30633489,30634169,30635079,30635308	30624612,30624816,30626949,30630773,30633586,30634423,30635188,30635387	0.808824
NCI_H460_nuclear_fraction	chr5	160199150	160199156	160199155	+	High_confidence	42	46	86	4.111708	4.116100	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	1.000000
NCI_H460_nuclear_fraction	chr9	92670313	92670379	92670350	+	High_confidence	13	13	109	5.211351	5.168800	chr9	92670392	92670512	SINE|MIR|MIRc	+	chr9	92670626	92671044	MSTRG.40273.1	+	92670626	92671044	0.614679
NCI_H460_nuclear_fraction	chr1	238486001	238486043	238486035	-	High_confidence	28	68	247	11.809209	6.347597	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480440	238486023	LINC01139|ENST00000649681.1	-	238480440	238486023	0.979757
NCI_H460_nuclear_fraction	chr4	122913361	122913362	122913361	-	High_confidence	8	8	11	0.525916	2.846439	chr4	122913129	122913485	LTR|ERVL-MaLR|MLT1A0	-	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	0.545455
NCI_H460_nuclear_fraction	chr8	127854973	127854995	127854973	+	RAMPAGE_only	5	5	23	1.099643	4.262692	chr8	127854909	127855080	SINE|MIR|MIR	-	chr8	127890627	128101253	PVT1|ENST00000513868.6	+	127890627,127939507,127983903,127989161,128070159,128096517,128099369,128100979	127890998,127939676,127984204,127989291,128070272,128096654,128099573,128101253	0.739130
NCI_H460_nuclear_fraction	chr2	179051653	179051692	179051690	-	RAMPAGE_only	37	44	148	7.075963	5.987325	chr2	179051586	179051988	LTR|ERV1|LTR7	-	chr2	178872132	179050086	CCDC141|ENST00000446116.5	-	178872132,178877963,178884900,178886751,178888526,178905328,178944534,178961229,178975056,178978483,179047283,179049839	178872312,178878143,178885092,178886871,178888668,178905501,178944651,178961483,178975165,178978675,179047406,179050086	0.858108
NCI_H460_nuclear_fraction	chr15	90979730	90979731	90979730	-	High_confidence	10	10	10	0.478106	3.121928	chr15	90979701	90979881	SINE|MIR|MIR	+	chr15	90969575	90980286	PRC1|ENST00000559828.1	-	90969575,90974135,90974584,90976675,90979157,90980241	90969623,90974246,90974731,90976771,90979294,90980286	0.600000
NCI_H460_nuclear_fraction	chr8	26395611	26395612	26395611	+	High_confidence	8	11	11	0.525916	3.277613	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.636364
NCI_H460_nuclear_fraction	chr4	138252212	138252251	138252230	-	RAMPAGE_only	236	287	871	41.643000	7.757227	chr4	138252132	138252402	SINE|Alu|AluSx1	-	chr4	138164093	138242349	SLC7A11|NM_014331.3	-	138164093,138179216,138180640,138182296,138183201,138185120,138214584,138219265,138223198,138232266,138236324,138241792	138172017,138179394,138180790,138182393,138183305,138185244,138214629,138219365,138223324,138232382,138236451,138242349	0.599311
NCI_H460_nuclear_fraction	chr6	63563458	63563459	63563458	+	RAMPAGE_only	7	8	9	0.430295	2.750000	chr6	63563031	63563704	LINE|L2|L2a	+	chr6	63572011	63583587	AL135905.2|ENST00000370651.6	+	63572011,63576435,63578436,63578897,63579256,63580056	63572719,63576985,63578529,63579028,63579331,63583587	0.888889
NCI_H460_nuclear_fraction	chr14	26678854	26678889	26678880	+	High_confidence	115	118	345	16.494644	5.139852	chr14	26673315	26679374	LINE|L1|L1PA2	-	chr14	26679229	26724794	MSTRG.11132.1	+	26679229,26724747	26679398,26724794	0.710145
NCI_H460_nuclear_fraction	chr6	63442345	63442346	63442345	-	High_confidence	320	324	438	20.941027	5.478230	chr6	63441883	63443495	LTR|ERV1|LTR12C	-	chr6	63342207	63442336	MSTRG.34431.1	-	63342207,63404505,63441714	63342248,63404601,63442336	0.977169
NCI_H460_nuclear_fraction	chr13	49495583	49495617	49495616	+	High_confidence	2	2	9	0.430295	2.750000	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495609	49528992	PHF11|NM_001040443.2	+	49495609,49506634,49513058,49518017,49520893,49522042,49523174,49524084,49526386,49528510	49496095,49506756,49513166,49518151,49520940,49522107,49523241,49524216,49526458,49528992	0.888889
NCI_H460	chr4	89493159	89493193	89493192	+	RAMPAGE_only	13	15	48	1.723577	5.053509	chr4	89493041	89493615	LTR|ERV1|MER41C	-	chr4	89627783	89720172	AC097478.1|ENST00000507916.6	+	89627783,89691284,89719825	89627917,89691405,89720172	0.708333
NCI_H460	chr18	46087018	46087043	46087042	-	High_confidence	12	13	20	0.718157	3.932138	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.650000
NCI_H460	chr2	218398232	218398233	218398232	+	High_confidence	9	10	12	0.430894	2.913977	chr2	218398216	218398343	SINE|MIR|MIRb	+	chr2	218398255	218404418	CTDSP1|ENST00000491064.5	+	218398255,218401563,218402113,218402348,218403034,218403231,218404296	218398332,218401712,218402215,218402405,218403127,218403417,218404418	0.500000
NCI_H460	chr19	45424459	45424491	45424482	-	High_confidence	2	2	8	0.287263	2.807355	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	0.875000
NCI_H460	chr12	12927723	12927741	12927733	+	High_confidence	85	96	318	11.418700	7.095564	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.707547
NCI_H460	chr1	245816910	245816979	245816978	-	RAMPAGE_only	8	8	48	1.723577	4.714662	chr1	245816539	245822560	LINE|L1|L1PA3	+	chr1	245749366	245814411	SMYD3|ENST00000490322.1	-	245749366,245814341	245749664,245814411	0.937500
NCI_H460	chr2	189193773	189193824	189193815	-	RAMPAGE_only	121	143	384	13.788619	5.969418	chr2	189193789	189194209	DNA|hAT-Charlie|Charlie1	+	chr2	189031895	189180011	COL5A2|ENST00000374866.8	-	189031895,189034915,189036615,189039271,189041585,189042719,189043150,189045178,189045799,189048208,189049346,189050568,189051319,189052171,189052748,189052910,189053423,189053894,189054158,189056972,189057319,189058428,189058848,189060729,189061561,189062864,189063009,189063171,189063979,189064556,189065003,189066389,189066728,189068014,189068225,189068785,189072039,189075392,189078515,189079062,189079977,189080989,189083983,189085159,189085718,189086725,189088694,189092309,189097276,189098726,189100106,189104263,189110224,189179507	189034216,189035155,189036803,189039563,189041693,189042773,189043258,189045232,189045907,189048262,189049454,189050676,189051481,189052225,189052802,189053018,189053477,189053948,189054212,189057026,189057427,189058527,189058893,189060783,189061615,189062918,189063063,189063270,189064033,189064655,189065057,189066497,189066782,189068113,189068270,189068884,189072093,189075437,189078569,189079107,189080031,189081043,189084037,189085213,189085772,189086770,189088772,189092420,189097330,189098759,189100139,189104277,189110449,189180011	0.684896
NCI_H460	chr4	39032918	39032938	39032920	-	High_confidence	28	43	92	3.303523	5.315165	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	38993734	39032922	TMEM156|ENST00000344606.6	-	38993734,38998723,39032225,39032641	38993998,38998909,39032443,39032922	0.750000
NCI_H460	chr3	11225963	11226026	11225985	+	High_confidence	12	14	72	2.585366	5.402089	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.652778
NCI_H460	chr5	140655901	140655989	140655988	+	RAMPAGE_only	14	18	108	3.878049	5.025078	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.981481
NCI_H460	chr1	33021446	33021458	33021457	-	RAMPAGE_only	3	4	11	0.394986	2.732159	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010630	33013287	AK2|ENST00000491241.1	-	33010630,33011447,33012073,33013206	33010833,33011710,33012122,33013287	0.545455
NCI_H460	chr2	40238626	40238631	40238630	-	RAMPAGE_only	12	12	23	0.825881	4.175736	chr2	40232600	40238627	LINE|L1|L1PA2	-	chr2	40114730	40430271	SLC8A1|ENST00000407929.6	-	40114730,40139400,40160764,40164853,40174824,40177751,40178386,40428472	40115629,40139676,40160864,40164984,40174842,40177855,40178493,40430271	0.826087
NCI_H460	chr14	51554602	51554614	51554602	+	High_confidence	2	2	6	0.215447	2.584963	chr14	51553917	51555014	LINE|L1|L1MC3	+	chr14	51554659	51579297	FRMD6|ENST00000555952.5	+	51554659,51570347,51578971	51554805,51570410,51579297	0.833333
NCI_H460	chr5	140593744	140593755	140593754	-	High_confidence	18	18	40	1.436314	4.346226	chr5	140593229	140593744	LINE|L1|L1P1	-	chr5	140575709	140593741	AC116353.5|ENST00000637576.1	-	140575709,140590874,140592023,140593652	140575879,140590991,140592101,140593741	0.575000
NCI_H460	chr19	5680234	5680261	5680234	-	High_confidence	8	9	39	1.400407	4.523986	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.974359
NCI_H460	chr14	102083152	102083187	102083152	-	RAMPAGE_only	2	2	14	0.502710	2.815072	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.928571
NCI_H460	chr19	12800915	12800969	12800944	-	High_confidence	10	12	36	1.292683	3.569532	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.944444
NCI_H460	chr4	41359606	41359608	41359606	+	High_confidence	2238	3033	3803	136.557596	5.288627	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.933999
NCI_H460	chr6	162057005	162057018	162057017	-	High_confidence	3	3	6	0.215447	2.584963	chr6	162056564	162057090	LTR|ERVL|MER68	+	chr6	161347424	162056926	MSTRG.20552.2	-	161347424,161360087,161386793,161548853,161569354,161785771,161973301,162054090,162056449	161350211,161360205,161386877,161549003,161569416,161785908,161973417,162054174,162056926	1.000000
NCI_H460	chr7	115030615	115030668	115030621	+	RAMPAGE_only	7	7	63	2.262195	5.230938	chr7	115025114	115031115	LINE|L1|L1PA2	-	chr7	115078957	115126314	LINC01393|NR_120521.1	+	115078957,115118732,115122177,115125442	115079109,115118825,115122247,115126314	0.952381
NCI_H460	chr14	55796682	55796688	55796682	-	High_confidence	3	3	9	0.323171	2.750000	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781138	55796686	LINC00520|ENST00000650527.1	-	55781138,55793045,55793367,55794283,55796602	55781352,55793110,55793456,55794345,55796686	0.666667
NCI_H460	chr18	12606738	12606757	12606738	-	RAMPAGE_only	1	1	7	0.251355	2.584963	chr18	12606533	12606830	SINE|Alu|AluSz6	-	chr18	12449505	12636340	SPIRE1|ENST00000440472.6	-	12449505,12452254,12453067,12454345,12463350,12464867,12479698,12493071,12496015,12506476,12512453,12535475,12546673,12588375,12635061,12636323	12449896,12452443,12453138,12454483,12463493,12464958,12479871,12493201,12496102,12506641,12512531,12535601,12546904,12588419,12635096,12636340	0.857143
NCI_H460	chr8	128415389	128415449	128415399	-	High_confidence	4	4	23	0.825881	4.175736	chr8	128415090	128415709	LINE|L2|L2a	+	chr8	128406260	128415381	LINC00824|ENST00000517583.1	-	128406260,128406775,128414213,128414540,128415365	128406633,128406846,128414408,128414690,128415381	0.521739
NCI_H460	chr4	122917813	122917856	122917855	-	RAMPAGE_only	8	8	34	1.220867	4.354852	chr4	122917758	122918008	LINE|L2|L2b	+	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	0.941176
NCI_H460	chr17	41871774	41871833	41871819	-	RAMPAGE_only	8	8	23	0.825881	4.001823	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.869565
NCI_H460	chr19	6604090	6604105	6604090	-	High_confidence	6	9	18	0.646342	3.836592	chr19	6604064	6604275	LTR|ERVL-MaLR|MLT1J	-	chr19	6583182	6604078	MSTRG.11852.2	-	6583182,6586153,6590102,6590840,6592415,6603940	6583478,6586405,6590136,6591055,6594300,6604078	0.944444
NCI_H460	chr6	26474331	26474344	26474343	+	RAMPAGE_only	5	5	15	0.538618	3.189898	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.933333
NCI_H460	chr18	7924082	7924105	7924082	+	RAMPAGE_only	2	2	11	0.394986	2.663533	chr18	7924016	7924284	LTR|ERV1|MER31-int	-	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	1.000000
NCI_H460	chr8	30653972	30653996	30653972	-	RAMPAGE_only	8	8	31	1.113144	4.002268	chr8	30653838	30654118	SINE|Alu|AluJb	+	chr8	30607103	30657005	GTF2E2|ENST00000518599.5	-	30607103,30612298,30614607,30635031,30653432,30656868	30607150,30612481,30614715,30635123,30653602,30657005	0.806452
NCI_H460	chr11	104969357	104969386	104969385	-	High_confidence	4	5	15	0.538618	3.128085	chr11	104968961	104971180	LINE|L1|L1PA10	+	chr11	104951027	104969366	CASP4|ENST00000417440.2	-	104951027,104951895,104954746,104968518,104969249	104951098,104952005,104955001,104968728,104969366	0.933333
NCI_H460	chr7	1533083	1533130	1533105	+	RAMPAGE_only	8	12	45	1.615854	4.927799	chr7	1533060	1533178	SINE|MIR|MIR3	-	chr7	1531161	1543043	MSTRG.20624.2	+	1531161,1539148,1539940	1538457,1539228,1543043	0.933333
NCI_H460	chr7	102973424	102973447	102973424	+	High_confidence	4	4	17	0.610434	3.169249	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973436	102978667	NFE4|ENST00000638942.1	+	102973436,102975890,102978380	102973771,102976230,102978667	0.588235
NCI_H460	chr8	29735252	29735275	29735274	-	High_confidence	27	27	113	4.057588	5.620949	chr8	29735013	29735262	SINE|MIR|MIR	-	chr8	29673921	29735223	LINC00589|ENST00000518623.5	-	29673921,29677909,29726155,29735170	29674443,29678004,29726423,29735223	0.734513
NCI_H460	chr3	178860335	178860441	178860440	-	High_confidence	15	15	96	3.447155	5.470820	chr3	178859948	178865979	LINE|L1|L1PA2	+	chr3	178525466	178860405	KCNMB2-AS1|NR_126561.1	-	178525466,178748428,178749045,178801792,178859488,178860293	178526625,178748485,178749236,178801934,178859623,178860405	0.760417
NCI_H460	chr3	151766724	151766738	151766735	+	RAMPAGE_only	2	2	8	0.287263	2.521641	chr3	151766184	151766973	LINE|L1|L1MC3	-	chr3	151770455	151784894	AADACP1|NR_026915.1	+	151770455,151775694,151783831	151770611,151775764,151784894	0.750000
NCI_H460	chr10	6779581	6779622	6779602	+	High_confidence	8	8	45	1.615854	4.739091	chr10	6779419	6779969	LTR|ERVL|MLT2A2	+	chr10	6779597	6842906	LINC00707|NR_038291.1	+	6779597,6781303,6833642,6837973,6840390	6779887,6781486,6833688,6838008,6842906	0.866667
NCI_H460	chr1	151195065	151195106	151195091	-	RAMPAGE_only	11	12	41	1.472222	4.804508	chr1	151194900	151195210	SINE|Alu|AluSc8	+	chr1	151176299	151190213	VPS72|NM_001271087.1	-	151176299,151178000,151184316,151185505,151185797,151190004	151177064,151178145,151184493,151185620,151185950,151190213	0.536585
NCI_H460	chr4	84299165	84299244	84299243	-	High_confidence	15	17	120	4.308943	6.344309	chr4	84298780	84304810	LINE|L1|L1PA2	+	chr4	83968081	84299169	LOC101928978|NR_125909.1	-	83968081,84012054,84148046,84149218,84243110,84284205,84286668,84293219,84299123	83970110,84012119,84148130,84149256,84243216,84284326,84286827,84293409,84299169	0.691667
NCI_H460	chr2	227876116	227876130	227876116	+	RAMPAGE_only	4	4	14	0.502710	3.238901	chr2	227876013	227876319	SINE|Alu|AluY	-	chr2	227871641	227903086	DAW1|ENST00000454999.5	+	227871641,227876442,227885350,227889855,227891254,227893794,227898181,227903001	227871729,227876494,227885423,227890000,227891313,227893917,227898281,227903086	0.571429
NCI_H460	chr17	69175776	69175819	69175818	-	High_confidence	13	16	48	1.723577	4.925523	chr17	69175735	69175831	DNA|TcMar-Tigger|MER44B	-	chr17	69148498	69175781	MSTRG.10960.6	-	69148498,69149032,69149983,69152042,69152361,69153304,69153470,69153830,69154234,69155018,69155804,69156831,69164073,69164963,69174280,69174606,69175405,69175618	69148925,69149088,69150063,69152183,69152481,69153399,69153546,69154009,69154326,69155136,69155925,69156923,69164154,69165083,69174394,69174777,69175513,69175781	0.916667
NCI_H460	chr8	15561629	15561643	15561642	+	High_confidence	5	5	12	0.430894	3.188722	chr8	15555981	15562028	LINE|L1|L1PA2	-	chr8	15561618	15673836	TUSC3|ENST00000507400.1	+	15561618,15623079,15650696,15659506,15662155,15673746	15561685,15623249,15650814,15659647,15662296,15673836	0.916667
NCI_H460	chr7	134527596	134527597	134527596	+	High_confidence	14366	15921	19625	704.691775	7.397426	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.980943
NCI_H460	chr22	41653541	41653690	41653689	+	RAMPAGE_only	6	6	61	2.190380	5.086315	chr22	41653710	41653849	DNA|hAT-Charlie|MER5A	+	chr22	41656952	41661699	XRCC6|ENST00000478914.1	+	41656952,41658251,41661330	41657032,41658352,41661699	0.704918
NCI_H460	chr1	154975497	154975530	154975524	+	High_confidence	17	19	84	3.016260	4.538269	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.845238
NCI_H460	chr6	33676324	33676377	33676324	+	RAMPAGE_only	4	4	21	0.754065	4.106603	chr6	33676226	33676457	SINE|MIR|MIRb	-	chr6	33621378	33696574	ITPR3|NM_002224.3	+	33621378,33640483,33655765,33657931,33658669,33659020,33659465,33662527,33662910,33663499,33663737,33664869,33665052,33665834,33667128,33667791,33668514,33668973,33670324,33670670,33671164,33672028,33673590,33674207,33675690,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33683206,33684019,33684356,33684597,33684773,33685358,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33621691,33640554,33655887,33658018,33658828,33659119,33659549,33662674,33663006,33663550,33663880,33664969,33665213,33665976,33667290,33667964,33668634,33669156,33670576,33670815,33671306,33672228,33673720,33674265,33675856,33676932,33677089,33677629,33678543,33678839,33680133,33680454,33680680,33682644,33683397,33684168,33684465,33684688,33684943,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696574	0.952381
NCI_H460	chr11	17282887	17282899	17282888	+	RAMPAGE_only	4	6	13	0.466802	2.625815	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.923077
NCI_H460	chrX	111127572	111127614	111127590	+	RAMPAGE_only	4	8	21	0.754065	3.921928	chrX	111127556	111127927	LINE|RTE-X|L4_A_Mam	+	chrX	111096376	111135371	MSTRG.24143.7	+	111096376,111097389,111097574,111103158,111123076,111124250	111096415,111097456,111097684,111103306,111123278,111135371	0.952381
NCI_H460	chr19	17935094	17935095	17935094	+	High_confidence	9	9	9	0.323171	3.169925	chr19	17934905	17935211	SINE|Alu|AluJr	-	chr19	17935095	17943985	CCDC124|NM_138442.3	+	17935095,17936409,17942655,17943260,17943507	17935191,17936579,17942845,17943375,17943985	1.000000
NCI_H460	chr9	128684459	128684493	128684484	-	RAMPAGE_only	11	16	72	2.585366	5.001171	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.666667
NCI_H460	chr9	20732419	20732434	20732428	+	RAMPAGE_only	14	17	37	1.328591	3.671782	chr9	20732128	20733009	LINE|L2|L2b	-	chr9	20726350	20770133	FOCAD|ENST00000604103.1	+	20726350,20740235,20758089,20764873,20770031	20726432,20740340,20758191,20765073,20770133	0.972973
NCI_H460	chr5	34244773	34244806	34244805	-	RAMPAGE_only	2	2	7	0.251355	2.584963	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34218343	AC138409.2|ENST00000507274.1	-	34175821,34179012,34182679,34218294	34175957,34179097,34182867,34218343	0.714286
NCI_H460	chr1	230539477	230539478	230539477	+	RAMPAGE_only	11	11	11	0.394986	3.277613	chr1	230539426	230541165	LTR|ERVL|HERV16-int	+	chr1	230642455	230693985	COG2|NM_007357.2	+	230642455,230659463,230660757,230663140,230664483,230668675,230669355,230671515,230674997,230678912,230683573,230685084,230686934,230688070,230688419,230690013,230691383,230693291	230642678,230659625,230660823,230663221,230664587,230668784,230669535,230671640,230675124,230679052,230683635,230685236,230687132,230688143,230688562,230690153,230691564,230693985	1.000000
NCI_H460	chr1	237471099	237471158	237471146	+	RAMPAGE_only	35	35	82	2.944445	5.290332	chr1	237470691	237471420	LTR|ERV1|LTR9A1	-	chr1	237270496	237832644	RYR2|ENST00000360064.7	+	237270496,237330877,237355964,237369518,237374716,237377322,237387280,237388086,237417048,237423091,237441318,237445400,237454390,237456599,237469091,237491805,237492953,237496510,237500710,237503288,237506709,237511687,237530426,237548430,237550543,237566566,237569144,237589792,237590639,237591738,237593475,237595497,237602024,237610761,237614038,237617285,237623764,237625660,237627806,237631426,237633577,237634888,237638356,237639014,237640896,237643326,237648443,237649876,237651410,237654273,237655820,237657943,237659984,237660809,237666511,237667882,237674095,237674730,237678047,237680455,237687454,237698964,237700228,237701977,237705212,237706948,237708857,237709479,237711744,237717197,237718461,237723127,237726272,237727086,237730259,237732045,237733704,237742295,237756287,237757696,237759775,237760954,237770806,237772011,237773519,237778665,237781564,237783674,237784987,237787953,237791428,237792104,237793866,237795288,237798036,237801855,237806136,237808900,237819035,237828380,237830529,237831513,237832551	237270616,237330982,237355985,237369608,237374795,237377435,237387380,237388183,237417123,237423248,237441483,237445522,237454574,237456735,237469187,237491924,237493087,237496752,237500903,237503505,237506814,237511791,237530510,237548590,237550691,237566775,237569319,237590001,237590992,237591853,237593636,237595657,237602111,237610988,237614843,237617486,237623870,237625804,237628080,237631541,237633710,237634992,237638492,237639201,237641002,237643447,237648613,237650097,237651501,237654414,237655984,237658022,237660074,237660947,237666589,237667958,237674219,237674846,237678112,237680577,237687504,237699025,237700467,237702059,237705343,237707269,237709098,237709567,237711837,237717368,237718521,237723262,237726308,237727199,237730356,237732149,237733756,237742349,237756387,237757776,237759852,237761028,237770887,237772100,237773648,237778770,237781646,237784984,237785006,237788135,237791515,237792323,237793997,237795331,237798170,237801916,237806283,237809035,237819192,237828445,237830630,237831565,237832644	0.621951
NCI_H460	chr5	128082249	128082273	128082249	-	High_confidence	6	6	31	1.113144	4.542748	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127966734	128082881	LINC01184|ENST00000508353.5	-	127966734,128076946,128082734	127966928,128077093,128082881	0.677419
NCI_H460	chr3	58526760	58526766	58526765	-	High_confidence	38	38	66	2.369919	4.490128	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	0.954545
NCI_H460	chr2	55268641	55268705	55268641	-	High_confidence	2	2	24	0.861789	4.004886	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	0.833333
NCI_H460	chr22	18149867	18149883	18149868	+	High_confidence	16	21	43	1.544038	4.396854	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.976744
NCI_H460	chr7	154928480	154928504	154928503	+	High_confidence	11	11	20	0.718157	3.932138	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.800000
NCI_H460	chr1	150729709	150729710	150729709	-	High_confidence	8	8	11	0.394986	2.921928	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150698553	150729863	MSTRG.1552.5	-	150698553,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150714614,150717137,150719472,150729148,150729573	150698734,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150714678,150717282,150719541,150729225,150729863	0.636364
NCI_H460	chr6	42887249	42887262	42887261	+	RAMPAGE_only	4	4	11	0.394986	2.521928	chr6	42887300	42887595	SINE|Alu|AluSp	+	chr6	42879681	42889925	RPL7L1|ENST00000304734.9	+	42879681,42880860,42883450,42884612,42885973,42886255,42887159	42879951,42880966,42883614,42884750,42886083,42886470,42889925	0.909091
NCI_H460	chr1	6208681	6208682	6208681	-	High_confidence	65	66	67	2.405827	3.644789	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.925373
NCI_H460	chr2	111480260	111480263	111480260	-	High_confidence	7	7	12	0.430894	3.022055	chr2	111480041	111480456	LTR|ERVL-MaLR|MLT1C	-	chr2	111429322	111480261	MIR4435-2HG|ENST00000442293.5	-	111429322,111479906,111480168	111429620,111480061,111480261	0.750000
NCI_H460	chr2	230342356	230342448	230342356	+	High_confidence	15	17	131	4.703930	6.137361	chr2	230337069	230342513	LINE|L1|L1HS	-	chr2	230342069	230372744	SP140L|ENST00000458341.1	+	230342069,230357804,230358963,230361613,230370907,230371597	230342173,230357967,230359132,230361697,230370967,230372744	0.854962
NCI_H460	chr1	148279251	148279284	148279251	+	High_confidence	134	135	972	34.902441	6.718751	chr1	148279033	148279814	LINE|L1|L1MEc	+	chr1	148279203	148344636	MSTRG.1486.1	+	148279203,148287689,148333867,148334653,148344228	148279531,148296530,148333951,148334759,148344636	0.902263
NCI_H460	chr10	26675882	26675898	26675882	-	High_confidence	6	6	14	0.502710	3.324863	chr10	26675712	26675886	SINE|Alu|AluYc	+	chr10	26664205	26676159	SELENOOLP|ENST00000446557.1	-	26664205,26668406,26676115	26664392,26668494,26676159	0.500000
NCI_H460	chr9	33306340	33306377	33306352	+	RAMPAGE_only	14	26	69	2.477642	4.635354	chr9	33306214	33306550	LINE|L2|L2c	-	chr9	33290544	33348723	NFX1|ENST00000318524.6	+	33290544,33294419,33301262,33303190,33307193,33311105,33313653,33318730,33318909,33328580,33332471,33338509,33342745,33344068,33347037,33347662	33290597,33295427,33301421,33303268,33307299,33311177,33313793,33318830,33319127,33328678,33332502,33338589,33342854,33344188,33347117,33348723	0.695652
NCI_H460	chr3	11225885	11225928	11225909	-	High_confidence	35	38	231	8.294716	6.530319	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.740260
NCI_H460	chr4	25861722	25861747	25861746	+	High_confidence	16	21	43	1.544038	4.815459	chr4	25861658	25861751	DNA|hAT?|UCON80	+	chr4	25861829	25929545	SMIM20|ENST00000515764.2	+	25861829,25928312,25929153	25862153,25928369,25929545	0.860465
NCI_H460	chr6	109250759	109250790	109250785	+	RAMPAGE_only	14	16	57	2.046748	4.841147	chr6	109245218	109251251	LINE|L1|L1PA2	-	chr6	109236613	109270514	LOC100996634|NM_001277339.1	+	109236613,109239327,109242178,109254447,109255370,109257545,109261888,109264800,109267807,109270038	109236780,109239520,109242306,109254648,109255492,109257774,109262091,109264956,109267901,109270514	0.736842
NCI_H460	chr7	99410112	99410162	99410116	+	High_confidence	8	8	36	1.292683	4.307715	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.972222
NCI_H460	chr7	107580245	107580267	107580245	+	High_confidence	587	590	3278	117.705969	6.858396	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.946004
NCI_H460	chr1	42959522	42959541	42959540	+	High_confidence	2	2	8	0.287263	2.521641	chr1	42959490	42959595	LINE|L2|L2c	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.750000
NCI_H460	chr2	27350389	27350390	27350389	-	RAMPAGE_only	4	4	7	0.251355	2.584963	chr2	27350219	27350401	DNA|hAT-Charlie|MER5A	+	chr2	27325848	27356492	GTF3C2|ENST00000359541.6	-	27325848,27327176,27328036,27328467,27328843,27329120,27329378,27333654,27333973,27335597,27335916,27336197,27337243,27337480,27337925,27341947,27342825,27343307,27356086	27326893,27327284,27328189,27328596,27328931,27329282,27329523,27333784,27333999,27335706,27336028,27336425,27337342,27337558,27338020,27342233,27343147,27343578,27356492	0.857143
NCI_H460	chr8	102925026	102925070	102925045	+	RAMPAGE_only	27	27	169	6.068429	5.906206	chr8	102925075	102925163	DNA|hAT-Charlie|MER5B	+	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.680473
NCI_H460	chr2	153872174	153872185	153872174	+	High_confidence	2	4	12	0.430894	3.027169	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.916667
NCI_H460	chr1	188822872	188822879	188822872	-	High_confidence	6	10	18	0.646342	3.101881	chr1	188822207	188822962	LINE|L1|L1M4b	+	chr1	188781893	188822919	MSTRG.2015.1	-	188781893,188814464,188822181	188782413,188814611,188822919	0.555556
NCI_H460	chr2	233357159	233357161	233357160	+	RAMPAGE_only	9	12	17	0.610434	3.702820	chr2	233356905	233357200	LTR|ERVL|LTR33A_	-	chr2	233354507	233435894	DGKD|ENST00000427930.5	+	233354507,233434379,233434768,233435817	233354674,233434484,233434901,233435894	0.588235
NCI_H460	chr16	87860676	87860697	87860676	-	RAMPAGE_only	3	3	7	0.251355	2.807355	chr16	87860400	87860678	LTR|ERV1|MER4B	+	chr16	87830022	87863639	SLC7A5|ENST00000565644.5	-	87830022,87834413,87836497,87837844,87838713,87839701,87840428,87841049,87851723,87863589	87833025,87834591,87836647,87837941,87838817,87839825,87840473,87841155,87851849,87863639	1.000000
NCI_H460	chr2	200888597	200888629	200888597	-	High_confidence	25	27	89	3.195800	5.274424	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.831461
NCI_H460	chr2	233357072	233357098	233357097	+	RAMPAGE_only	20	22	111	3.985773	6.005141	chr2	233356905	233357200	LTR|ERVL|LTR33A_	-	chr2	233354571	233392399	DGKD|ENST00000442524.4	+	233354571,233388256,233390402,233392069	233354674,233388367,233390483,233392399	0.513514
NCI_H460	chr3	84193005	84193015	84193014	-	High_confidence	3	3	7	0.251355	2.521641	chr3	84188584	84193036	LTR|ERV1|HERVH-int	-	chr3	84184559	84193172	MSTRG.16493.1	-	84184559,84192890	84187239,84193172	1.000000
NCI_H460	chr2	153592981	153593009	153592981	-	RAMPAGE_only	12	13	22	0.789973	3.970573	chr2	153592685	153593536	LINE|L1|L1PBa1	+	chr2	153420676	153421957	AC012501.2|ENST00000437634.1	-	153420676	153421957	0.500000
NCI_H460	chr11	64226142	64226180	64226158	-	High_confidence	52	58	321	11.526423	6.759654	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.993769
NCI_H460	chr9	135502442	135502487	135502442	+	High_confidence	5	5	41	1.472222	4.903056	chr9	135502307	135502706	LINE|L2|L2	-	chr9	135502587	135503986	MRPS2|ENST00000472946.1	+	135502587,135503541	135502637,135503986	0.951220
NCI_H460	chr17	4143196	4143244	4143199	+	High_confidence	71	74	198	7.109757	6.051344	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.989899
NCI_H460	chr7	22725915	22725956	22725955	+	High_confidence	5	7	20	0.718157	3.536887	chr7	22725923	22726198	LTR|Gypsy?|LTR88b	+	chr7	22725883	22732002	IL6|ENST00000404625.5	+	22725883,22727178,22727443,22728692,22729513,22731405	22726258,22727281,22727634,22728806,22729660,22732002	0.850000
NCI_H460	chr12	21937394	21937460	21937431	-	High_confidence	4	4	22	0.789973	3.546439	chr12	21937397	21937599	LINE|L2|L2b	-	chr12	21797388	21936694	ABCC9|NM_020297.3	-	21797388,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21882765,21887825,21894031,21895274,21906125,21908076,21910156,21910825,21912871,21915667,21916936,21925941,21933781,21936532	21801181,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21882873,21887934,21894174,21895315,21906288,21908211,21910312,21910978,21913066,21915910,21917103,21926063,21933923,21936694	0.772727
NCI_H460	chrX	131579169	131579173	131579169	-	High_confidence	5	5	9	0.323171	2.503258	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.777778
NCI_H460	chr7	106285294	106285295	106285294	-	High_confidence	10	10	14	0.502710	3.180833	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106248284	106285192	NAMPT|NM_005746.2	-	106248284,106253016,106254363,106261587,106263391,106268463,106269153,106272529,106274945,106277022,106284827	106251193,106253151,106254504,106261707,106263617,106268600,106269312,106272658,106275049,106277179,106285192	0.928571
NCI_H460	chr1	150729932	150729977	150729932	-	High_confidence	2	2	19	0.682249	3.794653	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150698553	150729863	MSTRG.1552.5	-	150698553,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150714614,150717137,150719472,150729148,150729573	150698734,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150714678,150717282,150719541,150729225,150729863	0.789474
NCI_H460	chr15	21273256	21273258	21273257	-	RAMPAGE_only	339	436	533	19.138890	6.544440	chr15	21273139	21273669	LTR|ERVL|LTR33A_	+	chr15	21264706	21277666	MSTRG.7425.1	-	21264706,21270768,21273132,21277644	21268484,21270924,21273250,21277666	0.510319
NCI_H460	chr12	69778975	69778985	69778975	+	High_confidence	6	6	23	0.825881	3.629220	chr12	69773410	69779441	LINE|L1|L1HS	-	chr12	69778966	69817117	RAB3IP|ENST00000553099.5	+	69778966,69784719,69794436,69795140,69800208,69801608,69812777,69812963,69815363	69779096,69784815,69794514,69795344,69800337,69801721,69812877,69813033,69817117	0.869565
NCI_H460	chr18	63702493	63702540	63702493	+	High_confidence	25	25	80	2.872629	4.525647	chr18	63702310	63702603	SINE|Alu|AluSg	+	chr18	63702303	63723893	SERPINB11|NM_080475.3	+	63702303,63702850,63710178,63711334,63712564,63716034,63720012,63720830,63722994	63702377,63703006,63710361,63711394,63712693,63716152,63720155,63720986,63723893	0.825000
NCI_H460	chr1	91297225	91297226	91297225	-	RAMPAGE_only	10	10	11	0.394986	3.321928	chr1	91296806	91302949	LINE|L1|L1PA4	+	chr1	91262185	91347449	HFM1|ENST00000430465.1	-	91262185,91262480,91266016,91267744,91273711,91274729,91276627,91276981,91313348,91313956,91315814,91316100,91316390,91319292,91322949,91323092,91324674,91343429,91347428	91262392,91262592,91266107,91267855,91273815,91274809,91276743,91277062,91313495,91314060,91315972,91316184,91316476,91319390,91322997,91323199,91324766,91343510,91347449	0.545455
NCI_H460	chr3	51199046	51199060	51199059	+	RAMPAGE_only	8	8	19	0.682249	3.836592	chr3	51199048	51205178	LINE|L1|L1PA3	+	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.842105
NCI_H460	chr19	45450760	45450766	45450760	-	High_confidence	4	4	13	0.466802	3.180833	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.615385
NCI_H460	chr15	43133119	43133135	43133119	+	High_confidence	3	3	13	0.466802	3.251629	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133143	43148788	TMEM62|ENST00000569535.5	+	43133143,43135511,43146492,43148754	43133402,43135649,43146634,43148788	0.692308
NCI_H460	chr19	47227142	47227209	47227152	-	High_confidence	12	17	74	2.657182	5.004921	chr19	47227045	47227213	SINE|MIR|MIR1_Amn	-	chr19	47221644	47227189	BBC3|ENST00000598636.1	-	47221644,47226563	47221918,47227189	1.000000
NCI_H460	chr1	188822796	188822810	188822796	-	High_confidence	15	15	40	1.436314	4.834184	chr1	188822207	188822962	LINE|L1|L1M4b	+	chr1	188781893	188822919	MSTRG.2015.1	-	188781893,188814464,188822181	188782413,188814611,188822919	0.575000
NCI_H460	chr13	50185884	50185953	50185884	+	High_confidence	20	24	122	4.380759	6.321352	chr13	50180295	50186330	LINE|L1|L1PA2	-	chr13	50185879	50528064	DLEU1|ENST00000485007.5	+	50185879,50390197,50415088,50433412,50527865	50186070,50390291,50415202,50433550,50528064	0.581967
NCI_H460	chr1	67791722	67791754	67791731	-	High_confidence	226	227	809	29.049460	6.239530	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701465	67791761	MSTRG.962.1	-	67701465,67707593,67777457,67791642	67705576,67707712,67777507,67791761	0.969098
NCI_H460	chr2	142812180	142812344	142812343	+	RAMPAGE_only	81	83	432	15.512196	6.805472	chr2	142812303	142812784	LINE|L1|L1PA16	-	chr2	142877497	143055832	KYNU|ENST00000264170.8	+	142877497,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142877736,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143055832	0.696759
NCI_H460	chr20	36168043	36168082	36168081	+	RAMPAGE_only	14	16	35	1.256775	3.843010	chr20	36167948	36168192	LTR?|LTR?|MamRep605	-	chr20	36173768	36229340	EPB41L1|ENST00000373941.5	+	36173768,36175550,36177951,36178629,36182271,36185116,36187675,36188346,36190276,36190621,36194211,36195328,36197858,36209487,36212271,36214359,36218875,36219760,36221863,36222277,36229331	36173954,36175715,36178056,36178672,36182347,36185335,36187763,36188499,36190374,36190797,36194360,36195364,36198041,36209898,36212376,36214440,36218962,36219844,36221944,36222394,36229340	0.914286
NCI_H460	chr3	122745547	122745591	122745590	-	RAMPAGE_only	5	6	27	0.969512	3.246404	chr3	122745410	122746106	DNA|TcMar-Tigger|MER44C	+	chr3	122740002	122741776	HSPBAP1|ENST00000471534.1	-	122740002,122741002	122740875,122741776	1.000000
NCI_H460	chr4	188109344	188109379	188109378	-	High_confidence	21	21	75	2.693090	5.105631	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188091372	188109602	MSTRG.18119.6	-	188091372,188097060,188097323,188101055,188104836,188105179,188109242	188091941,188097161,188099175,188101250,188104932,188105590,188109602	0.946667
NCI_H460	chr14	81170412	81170414	81170413	-	High_confidence	3	5	8	0.287263	2.750000	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.875000
NCI_H460	chr12	131371616	131371627	131371619	+	RAMPAGE_only	14	14	48	1.723577	4.724386	chr12	131371471	131371655	LTR|ERVL|LTR33A	-	chr12	131366659	131380898	MSTRG.6015.2	+	131366659,131370615,131376454,131379858,131380232	131366747,131372517,131376572,131380108,131380898	0.979167
NCI_H460	chr4	80125484	80125534	80125488	-	High_confidence	12	12	90	3.231708	5.748871	chr4	80125429	80125705	LINE|L2|L2a	+	chr4	80069435	80125454	ANTXR2|ENST00000506286.1	-	80069435,80071582,80097499,80097736,80104462,80121147,80125385	80069507,80071654,80097629,80097961,80104537,80121277,80125454	0.800000
NCI_H460	chr17	6853924	6853943	6853942	+	High_confidence	3	4	11	0.394986	3.321928	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853942	6894488	ALOX12P2|ENST00000570835.1	+	6853942,6854213,6892006,6894317	6854060,6854453,6892075,6894488	0.545455
NCI_H460	chr14	59787341	59787350	59787347	-	RAMPAGE_only	4	4	11	0.394986	3.121928	chr14	59787276	59787498	SINE|MIR|MIRb	+	chr14	59596327	59870752	RTN1|ENST00000611068.1	-	59596327,59603064,59603211,59603851,59605367,59607284,59726918,59745707,59870389,59870643	59596787,59603123,59603258,59603921,59605506,59607492,59727668,59746481,59870420,59870752	0.636364
NCI_H460	chr12	131371435	131371505	131371486	-	High_confidence	25	31	162	5.817074	5.992427	chr12	131371471	131371655	LTR|ERVL|LTR33A	-	chr12	131349192	131371833	MSTRG.6016.1	-	131349192,131353686,131371390	131352999,131353783,131371833	0.759259
NCI_H460	chr14	63102077	63102078	63102077	-	High_confidence	17	17	23	0.825881	3.045301	chr14	63101880	63102189	SINE|Alu|AluY	+	chr14	62949817	63102037	KCNH5|ENST00000394964.3	-	62949817,62980871,62987071,63001330,63006365,63016830,63101799	62950559,62981264,62987187,63001459,63006472,63016954,63102037	0.826087
NCI_H460	chr7	74186871	74186888	74186871	+	RAMPAGE_only	11	12	45	1.615854	4.819305	chr7	74186788	74186924	SINE|Alu|AluSx3	-	chr7	74174375	74197099	EIF4H|NM_031992.1	+	74174375,74187610,74189672,74189821,74194740,74195168	74174442,74187798,74189737,74189918,74194878,74197099	0.755556
NCI_H460	chr6	149896007	149896011	149896010	-	High_confidence	7	10	16	0.574526	3.189898	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.937500
NCI_H460	chr4	168558527	168558554	168558553	-	RAMPAGE_only	5	6	15	0.538618	3.506891	chr4	168557525	168558644	LTR|ERV1|LTR78	-	chr4	168476066	168537786	DDX60L|ENST00000505150.5	-	168476066,168490357,168492665,168530560,168537640	168476120,168490450,168492885,168530702,168537786	0.533333
NCI_H460	chr9	65715007	65715047	65715046	+	RAMPAGE_only	49	55	346	12.424120	6.127617	chr9	65709351	65715424	LINE|L1|L1PA3	-	chr9	65719384	65733994	CBWD5|ENST00000461932.5	+	65719384,65731629,65731801	65720092,65731698,65733994	0.956647
NCI_H460	chr4	119279669	119279743	119279742	+	RAMPAGE_only	7	7	47	1.687669	4.613251	chr4	119274113	119280127	LINE|L1|L1PA2	-	chr4	119239639	119294638	USP53|ENST00000509769.5	+	119239639,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119266299,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119266333,119267482,119268420,119269837,119272034,119273708,119291261,119294638	0.978723
NCI_H460	chr13	99496741	99496799	99496755	-	High_confidence	5	5	24	0.861789	3.849224	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99486961	99496772	LINC01232|ENST00000630421.2	-	99486961,99496134,99496708	99487816,99496217,99496772	0.583333
NCI_H460	chr5	150209138	150209208	150209176	+	RAMPAGE_only	47	51	229	8.222900	5.314570	chr5	150209029	150209231	SINE|MIR|MIRb	-	chr5	150189956	150211072	SLC6A7|ENST00000230671.6	+	150189956,150194727,150196715,150197041,150199227,150201088,150202346,150202578,150203666,150203906,150204531,150204826,150205455,150209405	150190360,150194911,150196847,150197276,150199366,150201223,150202450,150202703,150203779,150204038,150204631,150204927,150205623,150211072	0.969432
NCI_H460	chr5	150640347	150640400	150640347	+	High_confidence	10	10	37	1.328591	4.669925	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.945946
NCI_H460	chr3	121938363	121938403	121938363	+	RAMPAGE_only	3	3	17	0.610434	3.572469	chr3	121932760	121938786	LINE|L1|L1PA3	-	chr3	121894439	121941252	SLC15A2|ENST00000295605.6	+	121894439,121896405,121897387,121913020,121915226,121915615,121922219,121922774,121923039,121923221,121924350,121924944,121927757,121928420,121928981,121929301,121930839,121931638,121939348,121940383,121940830	121894581,121896493,121897529,121913120,121915317,121915693,121922302,121922861,121923129,121923266,121924383,121925033,121927839,121928555,121929146,121929348,121930950,121931735,121939495,121940488,121941252	1.000000
NCI_H460	chr4	122945328	122945329	122945328	+	RAMPAGE_only	12	12	17	0.610434	3.381580	chr4	122939633	122945796	LINE|L1|L1PA4	-	chr4	122923100	123102293	SPATA5|ENST00000422835.2	+	122923100,122927633,122929039,122933438,122934096,122935713,122936099,122938125,122947232,122979231,123028185,123056386,123057208,123090578,123102183	122923305,122927758,122929197,122933497,122934738,122935843,122936156,122938249,122947488,122979386,123028395,123056440,123057288,123090705,123102293	0.941176
NCI_H460	chr6	162056741	162056786	162056750	-	High_confidence	8	8	26	0.933604	3.973661	chr6	162056564	162057090	LTR|ERVL|MER68	+	chr6	161347424	162056926	MSTRG.20552.2	-	161347424,161360087,161386793,161548853,161569354,161785771,161973301,162054090,162056449	161350211,161360205,161386877,161549003,161569416,161785908,161973417,162054174,162056926	0.807692
NCI_H460	chr10	89285012	89285016	89285012	+	RAMPAGE_only	27	28	44	1.579946	4.786503	chr10	89284719	89285118	LTR|ERV1|LTR7	+	chr10	89283764	89292125	AL353751.1|ENST00000354541.7	+	89283764,89285035,89291986	89283891,89285264,89292125	0.795455
NCI_H460	chr16	75140674	75140678	75140674	+	High_confidence	177	192	257	9.228320	5.074582	chr16	75140677	75140965	SINE|Alu|AluY	+	chr16	75140682	75141024	MSTRG.9510.1	+	75140682	75141024	0.984436
NCI_H460	chr7	116724051	116724122	116724051	+	High_confidence	47	61	285	10.233740	6.391330	chr7	116718497	116724489	LINE|L1|L1PA2	-	chr7	116724026	116769909	MSTRG.21448.5	+	116724026,116724692,116731667,116739949,116740851,116755354,116757436,116757637,116758458,116759390,116763049,116769644	116724249,116724847,116731859,116740084,116741025,116755515,116757539,116757774,116758620,116759490,116763268,116769909	0.940351
NCI_H460	chr5	93564011	93564012	93564011	-	RAMPAGE_only	7	7	7	0.251355	2.807355	chr5	93563820	93564150	SINE|Alu|AluY	+	chr5	93409358	93570793	NR2F1-AS1|ENST00000607797.5	-	93409358,93553760,93554873,93563363,93569889	93411509,93553863,93554995,93563463,93570793	0.714286
NCI_H460	chr2	200862386	200862409	200862408	-	RAMPAGE_only	3	3	14	0.502710	3.238901	chr2	200862213	200862677	LTR|ERV1|LTR7B	+	chr2	200861089	200864252	CLK1|ENST00000481641.1	-	200861089,200861701,200864100	200861466,200861862,200864252	0.642857
NCI_H460	chr7	32043848	32043875	32043862	-	High_confidence	36	56	222	7.971545	6.613912	chr7	32043807	32043898	SINE|MIR|MIRc	+	chr7	31873331	32043887	MSTRG.20848.14	-	31873331,31877969,31878995,31880746,32042435,32043787	31873408,31878036,31879178,31880860,32042531,32043887	0.567568
NCI_H460	chr20	37297344	37297345	37297344	+	High_confidence	9	9	9	0.323171	3.169925	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
NCI_H460	chr2	38086135	38086139	38086138	-	High_confidence	71	72	120	4.308943	4.820208	chr2	38083094	38086112	LTR|ERV1|HERVH-int	-	chr2	38080931	38086208	MSTRG.13026.1	-	38080931,38085966	38081208,38086208	0.575000
NCI_H460	chr12	8681676	8681677	8681676	+	High_confidence	27	29	38	1.364499	4.892407	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.947368
NCI_H460	chr3	169812897	169812904	169812903	-	High_confidence	84	87	128	4.596206	4.825289	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.960938
NCI_H460	chr19	55280199	55280282	55280218	-	High_confidence	25	37	133	4.775746	3.758442	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.969925
NCI_H460	chr2	55645348	55645372	55645348	-	RAMPAGE_only	2	3	11	0.394986	2.913977	chr2	55645022	55645323	SINE|Alu|AluY	-	chr2	55636369	55647382	PNPT1|ENST00000481066.1	-	55636369,55637551,55640626,55643157,55643318,55644636,55646258,55646414,55647346	55636392,55637599,55640705,55643213,55643425,55645432,55646322,55646486,55647382	0.818182
NCI_H460	chr11	28680153	28680178	28680153	+	RAMPAGE_only	6	6	16	0.574526	3.773557	chr11	28680128	28680287	DNA|hAT-Charlie|MER5A	-	chr11	28702614	29044871	AC090833.1|ENST00000513853.5	+	28702614,28741824,29037741,29044444	28702834,28741908,29037816,29044871	0.500000
NCI_H460	chr16	4355592	4355593	4355592	-	High_confidence	684	865	866	31.096208	5.218101	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.951501
NCI_H460	chr7	106775017	106775057	106775017	+	High_confidence	5	6	19	0.682249	3.576618	chr7	106774626	106775270	LTR|ERV1|MER41B	-	chr7	106775075	106780942	LINC02577|ENST00000470135.5	+	106775075,106775958,106777541,106780649	106775200,106776022,106777732,106780942	0.684211
NCI_H460	chr19	9140393	9140428	9140427	+	High_confidence	22	22	101	3.626694	5.461468	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.861386
NCI_H460	chr1	188907484	188907507	188907502	+	RAMPAGE_only	6	7	22	0.789973	4.201841	chr1	188907327	188907670	LINE|L1|L1MEc	-	chr1	188905687	189040157	MSTRG.2017.1	+	188905687,189036038,189036717	188953133,189036180,189040157	0.909091
NCI_H460	chr20	3795750	3795789	3795788	+	High_confidence	42	48	330	11.849594	5.620147	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.987879
NCI_H460	chr12	109881078	109881116	109881115	-	High_confidence	6	6	12	0.430894	3.022055	chr12	109881109	109881661	LTR|ERV1|MER51B	+	chr12	109850942	109880488	GLTP|NM_016433.3	-	109850942,109855618,109857525,109858682,109880271	109852737,109855769,109857659,109858741,109880488	0.833333
NCI_H460	chr8	66926443	66926482	66926450	-	High_confidence	36	46	151	5.422087	4.717404	chr8	66926412	66926708	SINE|Alu|AluY	-	chr8	66922017	66926398	SNHG6|ENST00000520619.1	-	66922017,66922323,66922613,66926197	66922114,66922392,66922725,66926398	0.913907
NCI_H460	chr7	134432378	134432451	134432435	-	High_confidence	34	42	397	14.255421	5.441879	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.901763
NCI_H460	chr9	135519344	135519432	135519372	+	RAMPAGE_only	23	24	121	4.344851	6.046970	chr9	135519212	135519671	LINE|L1|L1MEi	-	chr9	135521437	135526540	LCN1|NM_001252619.1	+	135521437,135522046,135523231,135523879,135524829,135525131,135526343	135521587,135522177,135523302,135523977,135524931,135525158,135526540	0.942149
NCI_H460	chr15	20680556	20680579	20680578	-	RAMPAGE_only	5	5	21	0.754065	3.300559	chr15	20680529	20680580	DNA|TcMar-Tigger|MER44B	-	chr15	20657637	20688408	NBEAP1|ENST00000554452.5	-	20657637,20661959,20662142,20662934,20669467,20671112,20681109,20688214	20657743,20662057,20662205,20663014,20669637,20671268,20681221,20688408	0.904762
NCI_H460	chr2	179051654	179051691	179051690	-	RAMPAGE_only	6	7	21	0.754065	3.820889	chr2	179051586	179051988	LTR|ERV1|LTR7	-	chr2	178872132	179050086	CCDC141|ENST00000446116.5	-	178872132,178877963,178884900,178886751,178888526,178905328,178944534,178961229,178975056,178978483,179047283,179049839	178872312,178878143,178885092,178886871,178888668,178905501,178944651,178961483,178975165,178978675,179047406,179050086	0.904762
NCI_H460	chr4	41934368	41934369	41934368	+	High_confidence	12	14	15	0.538618	3.506891	chr4	41934028	41934560	LTR|ERV1|MER51A	+	chr4	41935119	41960572	TMEM33|ENST00000504986.5	+	41935119,41938601,41939195,41943746,41944792,41949301,41954069	41935529,41938696,41939383,41943814,41944926,41949385,41960572	0.533333
NCI_H460	chr1	153549133	153549141	153549133	-	High_confidence	3	4	7	0.251355	2.521641	chr1	153549066	153549188	SINE|MIR|MIRb	+	chr1	153547512	153549126	S100A3|ENST00000368712.1	-	153547512,153548344,153549027	153547846,153548490,153549126	0.857143
NCI_H460	chr19	45424343	45424396	45424384	-	High_confidence	16	31	81	2.908537	5.493422	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	0.950617
NCI_H460	chr12	71118212	71118279	71118233	-	High_confidence	24	29	203	7.289296	5.368555	chr12	71118072	71124103	LINE|L1|L1PA2	+	chr12	71109993	71118247	MSTRG.5496.2	-	71109993,71115849,71118069	71110453,71115958,71118247	0.837438
NCI_H460	chr18	63702762	63702767	63702763	+	High_confidence	4	6	10	0.359079	2.921928	chr18	63702673	63702809	SINE|Alu|AluJr	-	chr18	63702848	63723893	SERPINB11|ENST00000544088.5	+	63702848,63710178,63711334,63712564,63716034,63720012,63720830,63722994	63703006,63710361,63711394,63712693,63716152,63720155,63720986,63723893	0.900000
NCI_H460	chr5	91313685	91313699	91313698	-	High_confidence	4	4	14	0.502710	3.521641	chr5	91313501	91313807	SINE|Alu|AluY	+	chr5	91310626	91313675	LUCAT1|ENST00000649539.1	-	91310626,91313077,91313637	91312495,91313229,91313675	0.857143
NCI_H460	chr9	98045561	98045584	98045571	+	RAMPAGE_only	3	3	14	0.502710	3.521641	chr9	98045312	98045711	LTR|ERV1|MER57B1	+	chr9	98056676	98083083	NANS|NM_018946.3	+	98056676,98060781,98076917,98078192,98080815,98082845	98056940,98060997,98077017,98078347,98081082,98083083	0.500000
NCI_H460	chrX	71300058	71300465	71300459	+	RAMPAGE_only	52	64	522	18.743904	5.986180	chrX	71300434	71300519	SINE|Alu|AluSx	-	chrX	71291994	71301168	NONO|ENST00000490044.5	+	71291994,71294218,71296564,71296850,71297376,71297835,71298468,71298706,71299941	71293041,71294528,71296660,71297047,71297461,71297938,71298508,71298816,71301168	1.000000
NCI_H460	chr16	65053813	65053923	65053853	-	RAMPAGE_only	10	18	87	3.123984	5.228109	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.908046
NCI_H460	chr15	22276672	22276701	22276700	+	RAMPAGE_only	3	3	9	0.323171	2.947703	chr15	22276487	22276789	SINE|Alu|AluSc8	-	chr15	22278970	22282872	AC025884.1|ENST00000556034.1	+	22278970,22282798	22279274,22282872	0.888889
NCI_H460	chr13	67121084	67121095	67121089	+	High_confidence	4	4	14	0.502710	3.807355	chr13	67120999	67121128	LINE|L2|L2c	-	chr13	67121080	67156624	AL160254.1|ENST00000648561.1	+	67121080,67121255,67155990	67121128,67121325,67156624	0.571429
NCI_H460	chr17	60887013	60887094	60887070	+	High_confidence	24	27	161	5.781166	6.225663	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.944099
NCI_H460	chr1	153967484	153967504	153967486	+	High_confidence	15	22	55	1.974932	5.017559	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.654545
NCI_H460	chr10	97634098	97634131	97634108	-	High_confidence	13	17	61	2.190380	5.089898	chr10	97634006	97634308	SINE|Alu|AluJo	+	chr10	97614552	97634135	MSTRG.3136.1	-	97614552,97616677,97617207,97619586,97634004	97616411,97616787,97617322,97619683,97634135	0.639344
NCI_H460	chr17	9812942	9812943	9812942	-	High_confidence	185	192	227	8.151084	6.141227	chr17	9812619	9812902	SINE|Alu|AluJo	-	chr17	9800598	9813114	MSTRG.9925.5	-	9800598,9807489,9808829,9810570,9812896	9802644,9807601,9808982,9810618,9813114	0.511013
NCI_H460	chr14	101731413	101731495	101731413	+	High_confidence	200	202	628	22.550137	6.912333	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.901274
NCI_H460	chr1	188888784	188888785	188888784	-	High_confidence	6	6	6	0.215447	2.584963	chr1	188888422	188889119	DNA|TcMar-Tigger|MER44D	+	chr1	188869481	188888540	AL691515.2|ENST00000650519.1	-	188869481,188871136,188888393	188869748,188871506,188888540	1.000000
NCI_H460	chr2	207566527	207566584	207566583	+	RAMPAGE_only	5	9	25	0.897697	4.251629	chr2	207566631	207566825	SINE|MIR|MIR	+	chr2	207560313	207596949	CREB1|ENST00000418081.5	+	207560313,207561118,207567462,207570178,207575271,207576630,207577109,207577504,207596913	207560372,207561160,207567563,207570321,207575454,207576693,207577224,207577655,207596949	0.920000
NCI_H460	chr1	67792091	67792142	67792105	-	High_confidence	7	7	30	1.077236	4.423252	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701465	67791761	MSTRG.962.1	-	67701465,67707593,67777457,67791642	67705576,67707712,67777507,67791761	0.700000
NCI_H460	chr15	60391147	60391152	60391151	-	High_confidence	7	8	16	0.574526	3.506891	chr15	60391133	60391257	SINE|MIR|MIRc	-	chr15	60357193	60391151	ANXA2|ENST00000558986.5	-	60357193,60360940,60364428,60382341,60386027,60390212,60391107	60357236,60361054,60364523,60382441,60386086,60390317,60391151	0.562500
NCI_H460	chr10	5291830	5291877	5291848	-	RAMPAGE_only	16	26	100	3.590786	5.356175	chr10	5291580	5291975	LTR|ERVL-MaLR|MSTD	+	chr10	5275172	5288470	AKR1C7P|ENST00000305623.12	-	5275172,5277127,5278077,5282775,5283709,5284814,5285844,5288407	5275237,5277294,5278191,5282898,5283787,5284931,5286012,5288470	0.520000
NCI_H460	chr16	11587465	11587475	11587465	-	High_confidence	5	5	13	0.466802	2.815072	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
NCI_H460	chr11	123060151	123060253	123060174	-	High_confidence	12	12	151	5.422087	4.929693	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.596026
NCI_H460	chr17	75699612	75699616	75699615	+	RAMPAGE_only	5	6	10	0.359079	2.725481	chr17	75699537	75699658	LINE|L2|L2c	+	chr17	75702479	75705480	SAP30BP|ENST00000581207.5	+	75702479,75703310,75703807,75704755	75702571,75703371,75703859,75705480	0.500000
NCI_H460	chr2	107748454	107748457	107748456	-	High_confidence	28	34	46	1.651762	4.838567	chr2	107748198	107748521	SINE|Alu|AluY	-	chr2	107633623	107748260	MSTRG.13533.1	-	107633623,107650075,107650719,107748114	107636299,107650163,107650800,107748260	0.652174
NCI_H460	chr1	234433718	234433759	234433752	-	RAMPAGE_only	4	6	21	0.754065	4.011365	chr1	234433699	234433896	LINE|L2|L2c	+	chr1	234391312	234479103	TARBP1|ENST00000040877.1	-	234391312,234392415,234393361,234393645,234398381,234401180,234405902,234410444,234418083,234420701,234425672,234427316,234427575,234429135,234429415,234430086,234433409,234437274,234446802,234448479,234450427,234457666,234459229,234460260,234463836,234465655,234467501,234471187,234472713,234478172	234391745,234392552,234393486,234393837,234398553,234401262,234406099,234410531,234418233,234420812,234425793,234427388,234427766,234429324,234429677,234430301,234433571,234437372,234446975,234448579,234450566,234457756,234459326,234460396,234463934,234465708,234467650,234471257,234472811,234479103	0.952381
NCI_H460	chr7	106273894	106273899	106273894	-	RAMPAGE_only	4	4	10	0.359079	2.646439	chr7	106273767	106273880	SINE|MIR|MIRb	-	chr7	106261500	106284921	NAMPT|ENST00000354289.8	-	106261500,106263391,106268463,106269153,106272529,106274945,106277022,106284827	106261707,106263617,106268600,106269312,106272658,106275049,106277179,106284921	0.600000
NCI_H460	chr8	12497757	12497783	12497766	+	RAMPAGE_only	6	9	22	0.789973	3.594466	chr8	12497732	12497884	DNA|hAT-Charlie|MER5A1	+	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.863636
NCI_H460	chr1	68881609	68881695	68881694	+	High_confidence	9	11	76	2.728997	3.928788	chr1	68875777	68881805	LINE|L1|L1PA2	-	chr1	68881576	68943452	AL033530.1|ENST00000646995.1	+	68881576,68942580	68882003,68943452	0.934211
NCI_H460	chr18	976683	976772	976771	+	High_confidence	10	11	40	1.436314	4.471928	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976696	1159311	AP005328.1|ENST00000579835.5	+	976696,1061462,1133842,1137813,1159178	976895,1061535,1133894,1137864,1159311	0.500000
NCI_H460	chr2	75239193	75239280	75239277	+	High_confidence	140	248	760	27.289974	6.905660	chr2	75238954	75239942	DNA|TcMar-Tigger|Tigger6a	+	chr2	75239184	75283975	MSTRG.13364.1	+	75239184,75276509,75278077	75239696,75276599,75283975	0.931579
NCI_H460	chr17	2975621	2975667	2975621	+	High_confidence	20	24	183	6.571139	6.376249	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975607	3037738	MSTRG.9747.6	+	2975607,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2975775,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037738	0.918033
NCI_H460	chr7	94061493	94061533	94061498	+	High_confidence	39	40	103	3.698510	5.756566	chr7	94061392	94061581	SINE|MIR|MIRc	-	chr7	94061009	94072460	MSTRG.21210.2	+	94061009,94061455,94061768,94064425	94061270,94061625,94061864,94072460	0.951456
NCI_H460	chr15	51797020	51797042	51797020	+	RAMPAGE_only	2	3	8	0.287263	2.750000	chr15	51796509	51797143	DNA|TcMar-Tigger|MER44D	-	chr15	51782821	51810292	TMOD2|ENST00000561407.1	+	51782821,51798196,51806376,51808419,51810178	51782828,51798340,51806521,51808544,51810292	0.875000
NCI_H460	chr6	41961838	41961849	41961838	-	RAMPAGE_only	5	5	14	0.502710	3.238901	chr6	41961729	41962101	LINE|L2|L2b	+	chr6	41934932	41941848	CCND3|NM_001136125.2	-	41934932,41936558,41937234,41941451	41936107,41936695,41937394,41941848	0.714286
NCI_H460	chr12	126772464	126772483	126772464	-	High_confidence	3	3	8	0.287263	2.521641	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126729786	126772411	LINC00944|ENST00000540684.5	-	126729786,126730762,126732342,126746260,126747930,126772078	126729966,126730803,126732407,126746332,126748127,126772411	0.625000
NCI_H460	chr9	20513276	20513332	20513276	-	RAMPAGE_only	2	3	12	0.430894	3.251629	chr9	20513015	20513866	LTR|ERVL|MER54A	-	chr9	20346198	20621873	MLLT3|ENST00000630269.2	-	20346198,20353524,20354807,20360741,20363475,20365668,20413720,20448122,20456703,20620653,20621772	20346574,20353596,20354879,20360841,20363605,20365744,20414425,20448266,20456786,20620834,20621873	0.833333
NCI_H460	chr3	84193141	84193142	84193141	-	High_confidence	2259	2611	2854	102.481036	4.815508	chr3	84193038	84193404	LTR|ERV1|LTR7	-	chr3	84184559	84193172	MSTRG.16493.1	-	84184559,84192890	84187239,84193172	0.967414
NCI_H460	chr4	73721069	73721070	73721069	-	High_confidence	201043	233896	276811	9939.690952	4.767387	chr4	73720899	73721266	LTR|ERVL-MaLR|THE1B	-	chr4	73665544	73721102	MSTRG.17563.2	-	73665544,73670749,73706336,73720983	73666539,73670923,73706575,73721102	0.965384
NCI_H460	chr4	122913365	122913366	122913365	-	High_confidence	8	8	11	0.394986	2.646439	chr4	122913129	122913485	LTR|ERVL-MaLR|MLT1A0	-	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	0.909091
NCI_H460	chr9	94094613	94094648	94094637	+	RAMPAGE_only	6	9	26	0.933604	4.133661	chr9	94089082	94095103	LINE|L1|L1PA2	-	chr9	94084463	94109854	PTPDC1|ENST00000288976.3	+	94084463,94085250,94087830,94088144,94095316,94097320,94101565,94104274,94107827	94084768,94085422,94087911,94088263,94095454,94098579,94101751,94104385,94109854	0.961538
NCI_H460	chr2	227534916	227534965	227534916	+	RAMPAGE_only	5	6	18	0.646342	3.572431	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	1.000000
NCI_H460	chr6	149896128	149896143	149896128	-	High_confidence	2	4	11	0.394986	3.321928	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149883374	149896059	RAET1E|NM_001243328.1	-	149883374,149889347,149889884,149890816,149895845	149884504,149889623,149890145,149891034,149896059	0.818182
NCI_H460	chr15	30624357	30624368	30624357	+	High_confidence	11	11	33	1.184959	4.027518	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.939394
NCI_H460	chr11	83691988	83692023	83692022	+	RAMPAGE_only	3	3	14	0.502710	2.985228	chr11	83691943	83692136	SINE|MIR|MIRb	-	chr11	83645729	83725390	AP002370.2|ENST00000533669.5	+	83645729,83647503,83684448,83692020,83692928,83693731,83720829,83725191	83645837,83647594,83684525,83692075,83693071,83693810,83720985,83725390	0.928571
NCI_H460	chr4	39499795	39500004	39500003	-	RAMPAGE_only	24	32	339	12.172765	4.276513	chr4	39500000	39500047	SINE|Alu|AluYe5	+	chr4	39498787	39526557	UGDH|ENST00000506179.5	-	39498787,39503874,39504416,39505236,39505617,39508565,39509759,39510352,39510660,39514082,39521350,39526383	39500253,39503985,39504508,39505370,39505748,39508660,39509907,39510550,39510861,39514184,39521519,39526557	1.000000
NCI_H460	chr6	162061971	162061982	162061972	-	RAMPAGE_only	18	23	46	1.651762	4.115499	chr6	162061864	162062420	LINE|L1|L1ME1	+	chr6	161347424	162056926	MSTRG.20552.2	-	161347424,161360087,161386793,161548853,161569354,161785771,161973301,162054090,162056449	161350211,161360205,161386877,161549003,161569416,161785908,161973417,162054174,162056926	0.847826
NCI_H460	chr1	188822480	188822521	188822504	-	High_confidence	8	8	26	0.933604	4.293661	chr1	188822207	188822962	LINE|L1|L1M4b	+	chr1	188781893	188822919	MSTRG.2015.1	-	188781893,188814464,188822181	188782413,188814611,188822919	0.730769
NCI_H460	chr18	69947872	69947904	69947903	-	High_confidence	15	21	78	2.800813	5.232339	chr18	69947667	69947857	LINE|L2|L2a	-	chr18	69862955	69947853	CD226|NM_001303618.1	-	69862955,69867356,69873143,69895700,69946733,69947360	69864439,69867411,69873246,69896045,69947069,69947853	0.987179
NCI_H460	chr8	15561564	15561585	15561584	+	High_confidence	4	4	15	0.538618	3.240224	chr8	15555981	15562028	LINE|L1|L1PA2	-	chr8	15561618	15673836	TUSC3|ENST00000507400.1	+	15561618,15623079,15650696,15659506,15662155,15673746	15561685,15623249,15650814,15659647,15662296,15673836	1.000000
NCI_H460	chr4	128428045	128428067	128428045	+	High_confidence	2	2	10	0.359079	2.725481	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428069	128519394	AC108062.1|ENST00000511497.5	+	128428069,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519394	0.900000
NCI_H460	chr6	63442345	63442346	63442345	-	High_confidence	399	405	513	18.420733	5.426252	chr6	63441883	63443495	LTR|ERV1|LTR12C	-	chr6	63279635	63442364	MSTRG.20054.4	-	63279635,63285586,63293667,63294912,63320024,63321200,63379295,63382364,63404505,63441714	63281220,63285753,63293856,63295045,63320185,63321299,63379466,63382556,63404601,63442364	0.976608
NCI_H460	chr4	41360091	41360117	41360116	+	High_confidence	3	5	14	0.502710	3.521641	chr4	41360058	41360135	LINE|L2|L2a	+	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	1.000000
NCI_H460	chr1	246306051	246306146	246306141	-	High_confidence	367	454	4324	155.265592	7.714585	chr1	246306093	246306355	SINE|Alu|AluSz	+	chr1	245749341	246306224	MSTRG.2431.1	-	245749341,245764040,245858495,245863798,245915529,245927930,245929869,246186742,246305918	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246186942,246306224	0.920444
NCI_H460	chr4	39515071	39515088	39515085	-	RAMPAGE_only	4	7	19	0.682249	3.176110	chr4	39514983	39515137	SINE|Alu|AluJb	-	chr4	39498787	39526557	UGDH|ENST00000506179.5	-	39498787,39503874,39504416,39505236,39505617,39508565,39509759,39510352,39510660,39514082,39521350,39526383	39500253,39503985,39504508,39505370,39505748,39508660,39509907,39510550,39510861,39514184,39521519,39526557	0.526316
NCI_H460	chrX	16712889	16712929	16712889	-	High_confidence	4	4	19	0.682249	3.149673	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.947368
NCI_H460	chr4	89493024	89493040	89493024	+	RAMPAGE_only	2	2	7	0.251355	2.521641	chr4	89492929	89493036	DNA|TcMar-Tigger|Tigger3b	+	chr4	89627783	89720172	AC097478.1|ENST00000507916.6	+	89627783,89691284,89719825	89627917,89691405,89720172	0.571429
NCI_H460	chr1	243269684	243269685	243269684	+	RAMPAGE_only	11	11	14	0.502710	3.324863	chr1	243269606	243269808	LINE|L1|L1MDb	-	chr1	243256059	243305087	MSTRG.2418.3	+	243256059,243270104,243270977,243274542,243286271,243293090,243304712,243305011	243256240,243270257,243271063,243274656,243286397,243293219,243304777,243305087	0.642857
NCI_H460	chr15	66354122	66354123	66354122	-	RAMPAGE_only	9	9	9	0.323171	2.947703	chr15	66354028	66355027	LINE|L2|L2a	+	chr15	66336383	66356685	TIPIN|ENST00000566524.5	-	66336383,66341149,66349059,66349314,66352128,66352814,66356638	66337181,66341356,66349123,66349437,66352207,66352955,66356685	1.000000
NCI_H460	chr8	66955118	66955121	66955118	-	High_confidence	13	15	29	1.041328	4.450212	chr8	66949103	66955119	LINE|L1|L1PA2	-	chr8	66947589	66955117	TCF24|ENST00000566129.1	-	66947589,66954978	66948164,66955117	0.517241
NCI_H460	chr4	102431179	102431248	102431247	-	High_confidence	79	99	465	16.697155	5.954747	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.933333
NCI_H460	chr16	2206797	2206858	2206811	+	High_confidence	5	5	23	0.825881	3.368042	chr16	2206797	2206895	LTR|ERVL|LTR16A1	-	chr16	2206517	2207547	MLST8|ENST00000569848.1	+	2206517,2207034,2207192	2206659,2207110,2207547	0.565217
NCI_H460	chr7	8303981	8304027	8303984	+	High_confidence	9	9	26	0.933604	4.363713	chr7	8298113	8304140	LINE|L1|L1PA3	-	chr7	8303753	8349912	MSTRG.20714.4	+	8303753,8340382,8341016	8304155,8340556,8349912	0.923077
NCI_H460	chr3	83968575	83968663	83968595	+	High_confidence	10	12	77	2.764905	5.797077	chr3	83968329	83968721	LTR|ERV1|MER51B	+	chr3	83968323	84053542	MSTRG.16492.1	+	83968323,83990640,84045604,84049442	83968744,83990728,84046893,84053542	0.662338
NCI_H460	chr15	85330227	85330246	85330232	-	RAMPAGE_only	3	4	13	0.466802	2.625815	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.923077
NCI_H460	chr12	52221338	52221339	52221338	+	RAMPAGE_only	6	9	9	0.323171	2.947703	chr12	52221238	52221485	SINE|MIR|MIRb	-	chr12	52213626	52223848	MSTRG.5210.3	+	52213626,52223445	52213688,52223848	0.888889
NCI_H460	chr4	188109514	188109564	188109536	-	High_confidence	6	6	44	1.579946	4.804058	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188091372	188109602	MSTRG.18119.6	-	188091372,188097060,188097323,188101055,188104836,188105179,188109242	188091941,188097161,188099175,188101250,188104932,188105590,188109602	0.886364
NCI_H460	chr2	218287266	218287280	218287279	-	High_confidence	22	22	61	2.190380	4.729737	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.786885
NCI_H460	chr4	159274049	159274060	159274059	+	RAMPAGE_only	3	3	8	0.287263	2.521641	chr4	159273792	159274090	SINE|Alu|AluSx	-	chr4	159267845	159360150	RAPGEF2|NM_014247.2	+	159267845,159304341,159314590,159322346,159323458,159329857,159330333,159331430,159331629,159331925,159332450,159338310,159339113,159341563,159342978,159343280,159344035,159345105,159346788,159350136,159352684,159353486,159355852,159358113	159268215,159304473,159314768,159322483,159323617,159330010,159330498,159331538,159331833,159332034,159332697,159338468,159339354,159341947,159343190,159343404,159344059,159345329,159346998,159350289,159352910,159354046,159356158,159360150	0.875000
NCI_H460	chr15	53684279	53684432	53684361	-	High_confidence	16	16	224	8.043361	6.355617	chr15	53684199	53690229	LINE|L1|L1PA3	+	chr15	53515162	53684627	MSTRG.7909.5	-	53515162,53523217,53597078,53609512,53613665,53615425,53665571,53684145	53517754,53523322,53597274,53609592,53613757,53616243,53665768,53684627	0.977679
NCI_H460	chr1	68881723	68881767	68881766	+	High_confidence	7	9	27	0.969512	4.032303	chr1	68881807	68882267	DNA|TcMar-Tigger|Tigger1	+	chr1	68881576	68943452	AL033530.1|ENST00000646995.1	+	68881576,68942580	68882003,68943452	0.888889
NCI_H460	chr16	21612296	21612318	21612296	+	High_confidence	6	8	17	0.610434	4.000000	chr16	21612297	21612508	SINE|MIR|MIRc	+	chr16	21612099	21625115	METTL9|ENST00000562961.1	+	21612099,21612644,21617864,21624930	21612298,21612835,21618074,21625115	0.764706
NCI_H460	chr7	107880961	107881000	107880961	+	RAMPAGE_only	5	7	44	1.579946	4.079378	chr7	107880697	107880993	DNA|hAT-Charlie|MER1B	-	chr7	107890969	107921203	DLD|ENST00000205402.9	+	107890969,107893199,107901737,107902324,107903477,107904957,107905360,107906266,107915505,107916793,107917272,107917923,107919009,107919193	107891289,107893278,107901817,107902393,107903547,107905058,107905504,107906368,107915696,107916964,107917462,107918061,107919099,107921203	0.954545
NCI_H460	chr22	21014949	21014970	21014969	+	High_confidence	4	4	15	0.538618	3.182006	chr22	21014708	21014996	LINE|L2|L2b	+	chr22	21015026	21028830	P2RX6|ENST00000413302.6	+	21015026,21015941,21017988,21022675,21022941,21023117,21023274,21023508,21025804,21026010,21026251,21026419	21015338,21016092,21018060,21022751,21023035,21023198,21023416,21023618,21025898,21026076,21026329,21028830	0.866667
NCI_H460	chr4	41507641	41507664	41507641	+	RAMPAGE_only	4	5	15	0.538618	3.773557	chr4	41506728	41507652	LTR|ERVL|MER21C	-	chr4	41538156	41697814	LIMCH1|ENST00000503057.5	+	41538156,41598919,41603874,41605893,41613465,41619187,41620423,41626707,41629491,41631147,41632748,41632976,41633547,41638931,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41687839,41689526,41692281,41697159	41538350,41599026,41603905,41606004,41613661,41619440,41620690,41627010,41629734,41631477,41632867,41633085,41633808,41638967,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41687917,41689635,41692384,41697814	0.666667
NCI_H460	chr18	69896295	69896296	69896295	-	RAMPAGE_only	7	7	11	0.394986	2.913977	chr18	69896181	69896478	SINE|Alu|AluY	-	chr18	69864114	69947419	CD226|ENST00000577287.5	-	69864114,69867356,69873143,69895700,69944483,69946733,69947360	69864439,69867411,69873246,69896045,69944568,69946770,69947419	1.000000
NCI_H460	chr17	60887239	60887259	60887255	+	High_confidence	2	2	8	0.287263	2.521641	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887238	60947352	BCAS3|ENST00000590128.5	+	60887238,60889694,60902619,60910531,60924406,60947218	60887311,60889771,60902703,60910702,60924500,60947352	0.625000
NCI_H460	chr17	50271485	50271486	50271485	+	High_confidence	7	7	9	0.323171	2.947703	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
NCI_H460	chr1	75376210	75376281	75376210	-	RAMPAGE_only	11	11	41	1.472222	4.573990	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.804878
NCI_H460	chr17	59619888	59619923	59619904	+	High_confidence	1003	1101	5366	192.681583	5.620729	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.959187
NCI_H460	chr1	155650827	155650830	155650827	+	High_confidence	90	143	217	7.792006	5.143257	chr1	155650645	155651121	LTR|ERV1|HERV4_I-int	-	chr1	155650835	155651094	MSTRG.1709.1	+	155650835	155651094	0.834101
NCI_H460	chr7	103353924	103353931	103353924	+	High_confidence	7	7	15	0.538618	2.549255	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.866667
NCI_H460	chr13	43057852	43057891	43057883	+	RAMPAGE_only	7	7	26	0.933604	3.829275	chr13	43056898	43059152	LINE|L1|L1PB1	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.884615
NCI_H460	chr19	51350329	51350364	51350363	-	RAMPAGE_only	3	4	11	0.394986	2.663533	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
NCI_H460	chr18	7924141	7924151	7924141	+	RAMPAGE_only	5	7	19	0.682249	3.366091	chr18	7924016	7924284	LTR|ERV1|MER31-int	-	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.894737
NCI_H460	chr2	96303166	96303188	96303166	-	RAMPAGE_only	2	3	8	0.287263	2.500000	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
NCI_H460	chr8	32927967	32927984	32927976	+	High_confidence	569	625	1250	44.884826	6.783839	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927969	33044802	MSTRG.22021.2	+	32927969,32996200,33041634,33044366	32928093,32996316,33041771,33044802	0.954400
NCI_H460	chr3	183034353	183034367	183034366	-	RAMPAGE_only	3	3	9	0.323171	2.947703	chr3	183034168	183034477	SINE|Alu|AluY	+	chr3	183015288	183022717	MCCC1|ENST00000464601.5	-	183015288,183017265,183020129,183022416	183015566,183017337,183020237,183022717	0.888889
NCI_H460	chr10	5018007	5018033	5018014	-	High_confidence	46	49	181	6.499323	6.548356	chr10	5017765	5018153	LTR|ERVL-MaLR|MSTA	-	chr10	4987774	5018033	AKR1C2|NM_205845.2	-	4987774,4991830,4995318,4995755,4998624,4999199,5000549,5001513,5003751,5017899	4990038,4991913,4995484,4995865,4998747,4999277,5000666,5001681,5004014,5018033	0.762431
NCI_H460	chr6	137738904	137738905	137738904	-	High_confidence	376	417	497	17.846207	5.681994	chr6	137738750	137738945	SINE|MIR|MIRc	-	chr6	137730169	137738983	LINC02539|ENST00000419220.1	-	137730169,137738708	137730597,137738983	0.957746
NCI_H460	chr3	108389863	108389872	108389863	-	RAMPAGE_only	2	2	7	0.251355	2.521641	chr3	108389784	108389875	LINE|L2|L2a	+	chr3	108380368	108529322	MYH15|NM_014981.1	-	108380368,108383594,108384686,108388969,108391759,108394030,108398636,108399074,108405337,108408279,108410582,108414231,108416811,108421087,108428491,108430831,108437553,108439736,108441017,108444639,108454005,108455735,108456765,108459361,108460299,108463110,108464637,108470041,108470697,108476396,108485090,108486422,108492499,108493113,108495779,108498051,108499454,108500117,108501711,108505722,108510442,108529262	108381559,108383729,108384782,108389074,108391930,108394156,108398840,108399267,108405453,108408404,108410932,108414428,108416930,108421214,108428881,108430922,108437699,108439913,108441260,108444895,108454142,108455859,108456883,108459449,108460367,108463243,108464814,108470212,108470847,108476515,108485229,108486526,108492595,108493177,108495872,108498145,108499482,108500274,108501855,108505829,108510587,108529322	1.000000
NCI_H460	chr2	230342052	230342057	230342052	+	High_confidence	8	9	13	0.466802	3.084963	chr2	230337069	230342513	LINE|L1|L1HS	-	chr2	230342069	230372744	SP140L|ENST00000458341.1	+	230342069,230357804,230358963,230361613,230370907,230371597	230342173,230357967,230359132,230361697,230370967,230372744	0.538462
NCI_H460	chr8	61725847	61725848	61725847	-	RAMPAGE_only	21	21	25	0.897697	3.914866	chr8	61725647	61725942	LTR|ERVL-MaLR|MLT1A1	-	chr8	61623709	61714640	ASPH|NM_032466.3	-	61623709,61633682,61637946,61638321,61642887,61643385,61643944,61644599,61646749,61651049,61653567,61680967,61684038,61714268	61626280,61633727,61638003,61638363,61642920,61643433,61644001,61644632,61646878,61651124,61653660,61681036,61684188,61714640	0.800000
NCI_H460	chrX	23782625	23782665	23782664	-	High_confidence	6	7	18	0.646342	3.381580	chrX	23782563	23782777	DNA|hAT-Charlie|Charlie1	-	chrX	23772991	23782956	AC131011.1|ENST00000366134.2	-	23772991,23782567,23782884	23773510,23782648,23782956	0.777778
NCI_H460	chr1	32637312	32637370	32637369	-	RAMPAGE_only	6	7	33	1.184959	3.991729	chr1	32637281	32637581	SINE|Alu|AluSx3	+	chr1	32621829	32634061	ZBTB8OS|ENST00000498691.5	-	32621829,32627507,32631826,32632207,32633644,32633950	32621948,32627544,32631879,32632345,32633727,32634061	0.969697
NCI_H460	chr20	50172544	50172595	50172589	+	High_confidence	18	20	87	3.123984	5.563296	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172589	50176671	LINC01273|ENST00000411453.2	+	50172589,50172922,50176280	50172788,50173017,50176671	0.735632
NCI_H460	chr1	188822562	188822587	188822583	-	High_confidence	9	9	25	0.897697	4.023137	chr1	188822207	188822962	LINE|L1|L1M4b	+	chr1	188781893	188822919	MSTRG.2015.1	-	188781893,188814464,188822181	188782413,188814611,188822919	0.720000
NCI_H460	chr5	72846148	72846171	72846148	+	RAMPAGE_only	12	14	37	1.328591	4.378240	chr5	72846047	72846453	LINE|L1|L1ME3A	+	chr5	72848102	72914388	TNPO1|NM_153188.2	+	72848102,72848384,72851243,72855773,72861807,72865595,72872638,72875614,72877227,72882466,72883063,72887069,72888077,72889785,72891809,72893138,72893376,72893615,72896457,72897055,72900005,72900973,72903708,72905302,72908708	72848251,72848498,72851319,72855923,72861914,72865729,72872720,72875737,72877346,72882527,72883232,72887222,72888303,72889957,72891896,72893246,72893535,72893703,72896556,72897151,72900081,72901073,72903783,72905445,72914388	1.000000
NCI_H460	chr4	110410982	110411018	110411002	+	RAMPAGE_only	3	3	16	0.574526	3.240224	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110365732	110506258	ENPEP|ENST00000510961.1	+	110365732,110488540,110491032,110500028,110506182	110365804,110488682,110491164,110500163,110506258	0.562500
NCI_H460	chr17	30968781	30968789	30968788	+	High_confidence	7	7	14	0.502710	3.235926	chr17	30968749	30968853	LINE|L2|L2	-	chr17	30968784	30970307	RNF135|ENST00000582674.1	+	30968784,30970277	30969335,30970307	0.571429
NCI_H460	chr1	188887901	188887919	188887918	-	High_confidence	18	20	61	2.190380	4.347886	chr1	188887879	188888422	LINE|L1|L1MA8	+	chr1	188869476	188887434	AL691515.2|ENST00000414765.1	-	188869476,188887240	188869748,188887434	0.901639
NCI_H460	chr19	35164216	35164245	35164244	+	High_confidence	3	5	12	0.430894	2.584963	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	1.000000
NCI_H460	chr12	116759917	116759935	116759927	+	High_confidence	103	112	279	10.018293	4.265847	chr12	116756444	116760863	LINE|L1|L1PB1	-	chr12	116759881	116851762	MSTRG.5838.9	+	116759881,116766813,116779194,116833791,116835959,116836180,116849313	116760621,116766914,116779348,116833941,116836025,116836282,116851762	0.978495
NCI_H460	chr5	160199150	160199156	160199155	+	High_confidence	20	30	48	1.723577	3.870856	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.979167
NCI_H460	chr20	18794077	18794086	18794077	+	High_confidence	14	14	33	1.184959	4.366681	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
NCI_H460	chr8	89897311	89897332	89897326	-	High_confidence	6	6	16	0.574526	3.875000	chr8	89892183	89898369	LINE|L1|L1MA3	+	chr8	89892875	89897325	MSTRG.22279.1	-	89892875	89897325	0.812500
NCI_H460	chr15	66502611	66502741	66502611	-	High_confidence	76	76	981	35.225612	6.620674	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.944954
NCI_H460	chr6	28354199	28354206	28354205	-	High_confidence	59	77	110	3.949865	5.514362	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329449	28354204	ZSCAN31|ENST00000434036.5	-	28329449,28336789,28353861,28354130	28329714,28336943,28353952,28354204	0.609091
NCI_H460	chr22	50757202	50757229	50757202	+	High_confidence	3	3	15	0.538618	3.378783	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.933333
NCI_H460	chr3	114624988	114625034	114625006	-	High_confidence	40	43	124	4.452575	5.223080	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.838710
NCI_H460	chr12	54187904	54187905	54187904	-	High_confidence	17	17	20	0.718157	3.921928	chr12	54187852	54187993	LINE|L2|L2c	-	chr12	54181484	54187906	SMUG1|ENST00000505662.1	-	54181484,54183764,54187818	54182623,54183959,54187906	0.600000
NCI_H460	chr12	26914558	26914572	26914558	-	RAMPAGE_only	3	4	11	0.394986	2.921928	chr12	26914520	26914587	LINE|RTE-BovB|MamRTE1	+	chr12	26905180	26917734	INTS13|ENST00000538155.5	-	26905180,26906301,26911177,26913456,26913973,26916001,26917351,26917643	26905536,26906437,26911317,26913687,26914128,26916180,26917441,26917734	0.909091
NCI_H460	chr11	17282797	17282831	17282797	+	RAMPAGE_only	2	2	10	0.359079	2.947703	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.900000
NCI_H460	chr3	37058830	37058884	37058883	-	RAMPAGE_only	3	4	15	0.538618	2.896292	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.933333
NCI_H460	chr17	19749351	19749354	19749351	-	High_confidence	129	137	191	6.858401	5.258848	chr17	19749293	19749417	LINE|L2|L2a	+	chr17	19743231	19748943	ALDH3A1|ENST00000574162.5	-	19743231,19744967,19747901,19748798	19743463,19745134,19748216,19748943	0.748691
NCI_H460	chr4	73104198	73104245	73104198	-	High_confidence	83	90	263	9.443767	6.538868	chr4	73103951	73104200	DNA|hAT-Charlie|Charlie2b	-	chr4	73075685	73104232	MSTRG.17566.3	-	73075685,73076939,73077354,73078641,73085248,73090666,73094078,73097116,73098072,73102375,73104002	73076290,73077104,73077533,73078890,73085446,73092300,73094228,73097272,73098520,73102547,73104232	0.927757
NCI_H460	chr4_GL000008v2_random	170343	170368	170347	-	RAMPAGE_only	34	46	133	4.775746	4.893342	chr4_GL000008v2_random	170280	170685	LTR|ERV1|MER61C	+	chr4_GL000008v2_random	161986	178171	ANKRD20A12P|NR_046228.1	-	161986,163784,164602,175824,177526	162439,163998,164884,175974,178171	0.969925
NCI_H460	chr3	130821361	130821363	130821361	+	High_confidence	10	15	16	0.574526	3.506891	chr3	130821365	130821762	LTR|ERVL-MaLR|MLT1E1A	+	chr3	130821183	130823914	AC097105.1|ENST00000647973.1	+	130821183,130822699	130821584,130823914	0.812500
NCI_H460	chr5	60533916	60533920	60533919	+	RAMPAGE_only	78	90	122	4.380759	4.527411	chr5	60533762	60534097	LTR|ERVL-MaLR|MSTD	+	chr5	60546218	60546349	RF02161|ENST00000619680.1	+	60546218	60546349	0.827869
NCI_H460	chr1	196786489	196786568	196786536	+	RAMPAGE_only	13	13	110	3.949865	5.178243	chr1	196780803	196786955	LINE|L1|L1PA3	-	chr1	196774812	196793488	CFHR3|ENST00000367427.7	+	196774812,196779161,196779796,196788215,196788744,196790044,196793316	196774944,196779356,196779973,196788398,196788944,196790227,196793488	0.954545
NCI_H460	chr3	39154613	39154651	39154613	-	High_confidence	3	3	20	0.718157	3.405822	chr3	39154504	39154649	LINE|L2|L2c	+	chr3	39141850	39154602	CSRNP1|NM_001320560.1	-	39141850,39144136,39144996,39146477,39154496	39144044,39144451,39145256,39146722,39154602	0.950000
NCI_H460	chr6	53617049	53617057	53617056	-	High_confidence	3	5	12	0.430894	3.418296	chr6	53616804	53617217	LTR|ERVL-MaLR|MSTA	-	chr6	53561288	53617007	AL033397.1|ENST00000502390.5	-	53561288,53564749,53569422,53573199,53616885	53564420,53564889,53569605,53573275,53617007	0.833333
NCI_H460	chr10	115435128	115435149	115435128	+	High_confidence	8	9	26	0.933604	3.763342	chr10	115435029	115435292	SINE|Alu|AluY	-	chr10	115435150	115948990	MSTRG.3297.10	+	115435150,115461940,115467173,115469171,115519262,115549457,115727247,115847876,115944657	115435483,115462035,115467252,115469329,115519324,115549536,115727355,115847991,115948990	1.000000
NCI_H460	chr13	43055406	43055412	43055406	+	RAMPAGE_only	88	101	158	5.673442	5.843743	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.670886
NCI_H460	chr21	29193275	29193276	29193275	+	High_confidence	4	4	6	0.215447	2.584963	chr21	29193019	29193674	LTR|ERV1|MER50B	+	chr21	29193493	29288205	LINC00189|NR_027072.2	+	29193493,29287983	29194260,29288205	1.000000
NCI_H460	chrX	19349990	19350015	19349990	+	RAMPAGE_only	1	1	7	0.251355	2.584963	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19355317	19359025	PDHA1|ENST00000481733.1	+	19355317,19355685,19357651,19358915	19355504,19355757,19357719,19359025	0.714286
NCI_H460	chr12	109885820	109885845	109885820	+	RAMPAGE_only	20	22	59	2.118564	5.260926	chr12	109885780	109885918	SINE|Alu|AluJr	-	chr12	109900263	109905027	TCHP|ENST00000537218.1	+	109900263,109903026,109903936,109904736	109900426,109903214,109904147,109905027	0.661017
NCI_H460	chr18	66596004	66596010	66596007	-	RAMPAGE_only	4	4	11	0.394986	2.721928	chr18	66595018	66596800	LINE|L1|L1PA15	+	chr18	66505044	66604088	CDH19|ENST00000540086.5	-	66505044,66529844,66534985,66543970,66544718,66551093,66554404,66568415,66572009,66603953	66505302,66529966,66535107,66544224,66544903,66551258,66554524,66568710,66572316,66604088	0.909091
NCI_H460	chr1	97904654	97904678	97904675	-	RAMPAGE_only	19	19	45	1.615854	4.757546	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.755556
NCI_H460	chr8	8244527	8244582	8244527	-	High_confidence	17	20	93	3.339431	5.453984	chr8	8244455	8244522	LTR|ERV1|MER57A-int	-	chr8	8237673	8244667	ALG1L13P|ENST00000523017.5	-	8237673,8238190,8239494,8240428,8241321,8242786,8244459	8237719,8238301,8239554,8240549,8241400,8242926,8244667	0.795699
NCI_H460	chr1	32221740	32221758	32221748	+	High_confidence	6	6	18	0.646342	3.308271	chr1	32221596	32221823	SINE|MIR|MIRb	-	chr1	32221583	32231604	EIF3I|NM_003757.3	+	32221583,32222357,32222537,32224033,32224409,32226170,32226402,32228498,32228726,32229134,32230926,32231114	32222032,32222444,32222630,32224121,32224475,32226320,32226530,32228609,32228816,32229208,32231019,32231604	0.944444
NCI_H460	chrX	65620312	65620357	65620312	+	RAMPAGE_only	10	10	63	2.262195	5.102369	chrX	65614680	65620735	LINE|L1|L1PA2	-	chrX	65588380	65625865	MSN|ENST00000609205.5	+	65588380,65588885,65589645,65624643	65588612,65589068,65589769,65625865	0.936508
NCI_H460	chr14	87989973	87990018	87990016	-	High_confidence	3	6	16	0.574526	3.373557	chr14	87989963	87990254	LINE|L2|L2c	+	chr14	87976357	87989647	GALC|ENST00000554916.5	-	87976357,87982204,87984393,87986488,87988143,87988454,87989573	87976488,87982243,87984533,87986602,87988207,87988523,87989647	0.562500
NCI_H460	chr1	9302919	9302966	9302965	+	RAMPAGE_only	4	6	22	0.789973	4.152391	chr1	9302648	9303809	LTR|ERVL|ERVL-int	+	chr1	9294527	9356497	SPSB1|ENST00000450402.1	+	9294527,9355742	9294594,9356497	0.727273
NCI_H460	chr8	75324289	75324381	75324300	-	High_confidence	75	78	607	21.796072	6.944045	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.662273
NCI_H460	chr4	158173024	158173025	158173024	-	High_confidence	201	211	267	9.587399	6.536845	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.846442
NCI_H460	chrX	103377864	103377865	103377864	-	High_confidence	8	8	8	0.287263	2.750000	chrX	103377819	103378035	LINE|L1|L1M5	-	chrX	103377042	103378019	MSTRG.24094.1	-	103377042,103377462	103377106,103378019	0.750000
NCI_H460	chr13	64075701	64075769	64075762	-	High_confidence	21	21	111	3.985773	4.850272	chr13	64074921	64075752	LTR|ERV1|MER52A	-	chr13	63986370	64076011	LINC00355|ENST00000456627.1	-	63986370,63990095,64002384,64003347,64034346,64075241	63987039,63990200,64002409,64003465,64034537,64076011	0.927928
NCI_H460	chr18	80148045	80148049	80148048	+	High_confidence	20	22	39	1.400407	4.807009	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.743590
NCI_H460	chr8	75324525	75324526	75324525	-	RAMPAGE_only	10	11	14	0.502710	3.378783	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223116	75278889	CASC9|NR_103849.2	-	75223116,75278712	75224358,75278889	0.571429
NCI_H460	chr1	156815425	156815505	156815425	-	High_confidence	29	49	103	3.698510	4.823756	chr1	156815315	156815398	LINE|CR1|L3b	-	chr1	156809660	156815411	SH2D2A|ENST00000486350.1	-	156809660,156813847,156814204,156815036	156809807,156814016,156814294,156815411	0.883495
NCI_H460	chr12	79045201	79045270	79045259	+	High_confidence	28	34	179	6.427507	6.357322	chr12	79039621	79045645	LINE|L1|L1PA2	-	chr12	79045158	79450279	MSTRG.5533.9	+	79045158,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045387,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450279	0.849162
NCI_H460	chr9	87728957	87728995	87728957	+	RAMPAGE_only	2	2	7	0.251355	2.521641	chr9	87728903	87729179	SINE|Alu|AluJb	+	chr9	87726133	87731393	CTSL|ENST00000495822.1	+	87726133,87727593,87728717,87729572,87730380,87731007	87726253,87727702,87728809,87729735,87730498,87731393	1.000000
NCI_H460	chr6	37423954	37423985	37423984	+	RAMPAGE_only	2	2	8	0.287263	2.521641	chr6	37423607	37424237	LTR|ERV1|LTR9	-	chr6	37433130	37481508	CMTR1|NM_015050.2	+	37433130,37435623,37443998,37446290,37450250,37451805,37453046,37453239,37458611,37459565,37461548,37461969,37462828,37471020,37471846,37472418,37473469,37474523,37475320,37476125,37477591,37478408,37479146,37480012	37433377,37435762,37444150,37446449,37450343,37451877,37453141,37453312,37458810,37459684,37461645,37462102,37463008,37471077,37471904,37472487,37473601,37474646,37475412,37476194,37477639,37478521,37479255,37481508	0.500000
NCI_H460	chr17	78632047	78632089	78632063	-	High_confidence	13	16	105	3.770325	5.331728	chr17	78632006	78632221	DNA|hAT-Charlie|MER1A	+	chr17	78617392	78632064	LINC02081|ENST00000649477.1	-	78617392,78624191,78627917,78628317,78630031,78631918	78617626,78624315,78628035,78628438,78630430,78632064	0.990476
NCI_H460	chr8	9188188	9188274	9188188	+	High_confidence	41	41	321	11.526423	6.323030	chr8	9188163	9188460	LINE|L2|L2b	-	chr8	9188206	9203024	MSTRG.21845.13	+	9188206,9189350,9198923,9202498	9188443,9189586,9198991,9203024	0.919003
NCI_H460	chr12	109881139	109881202	109881180	-	High_confidence	3	3	19	0.682249	3.614369	chr12	109881109	109881661	LTR|ERV1|MER51B	+	chr12	109850942	109880488	GLTP|NM_016433.3	-	109850942,109855618,109857525,109858682,109880271	109852737,109855769,109857659,109858741,109880488	0.789474
NCI_H460	chr5	32531833	32531865	32531864	+	High_confidence	8735	8923	24335	873.817801	5.310660	chr5	32531850	32532021	SINE|MIR|MIR3	-	chr5	32531632	32601323	SUB1|ENST00000506237.5	+	32531632,32588511,32591562,32598960,32601004	32531916,32588584,32591685,32599069,32601323	0.973331
NCI_H460	chr9	77822994	77823008	77822997	-	RAMPAGE_only	22	25	52	1.867209	4.950064	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77716108	78031432	MSTRG.23007.2	-	77716108,77728513,77794462,77797519,77815615,77922160,78031099,78031402	77721513,77728667,77794592,77797648,77815770,77922345,78031343,78031432	0.980769
NCI_H460	chr9	76392862	76392885	76392881	-	High_confidence	3	3	10	0.359079	2.947703	chr9	76392625	76392924	SINE|Alu|AluJo	+	chr9	76387283	76393766	RFK|ENST00000476087.5	-	76387283,76388553,76392417,76393713	76387529,76388656,76392569,76393766	0.500000
NCI_H460	chr6	125920613	125920615	125920614	+	RAMPAGE_only	45	61	66	2.369919	5.525988	chr6	125920573	125920708	SINE|Alu|AluJo	-	chr6	125919304	125931111	NCOA7|ENST00000444128.2	+	125919304,125920942,125922681,125927662,125928635	125919431,125921068,125922834,125927758,125931111	0.727273
NCI_H460	chr4	158167223	158167229	158167228	-	High_confidence	11	11	36	1.292683	4.359378	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158127544	158167212	FAM198B|ENST00000592586.1	-	158127544,158130785,158155610,158167176	158127614,158131012,158155825,158167212	0.805556
NCI_H460	chr15	51603697	51603702	51603701	-	High_confidence	16	18	25	0.897697	4.168296	chr15	51603584	51603891	SINE|Alu|AluY	+	chr15	51547331	51603701	DMXL2|ENST00000560421.5	-	51547331,51563380,51564124,51565087,51568486,51576055,51603606	51547408,51563447,51564260,51565166,51568558,51576181,51603701	0.600000
NCI_H460	chr18	63702271	63702321	63702271	+	High_confidence	7	9	43	1.544038	4.954994	chr18	63702310	63702603	SINE|Alu|AluSg	+	chr18	63702303	63723893	SERPINB11|NM_080475.3	+	63702303,63702850,63710178,63711334,63712564,63716034,63720012,63720830,63722994	63702377,63703006,63710361,63711394,63712693,63716152,63720155,63720986,63723893	0.906977
NCI_H460	chr7	137181721	137181746	137181721	-	High_confidence	4	6	20	0.718157	3.215841	chr7	137181608	137187601	LINE|L1|L1PA3	+	chr7	136784074	137181771	AC009264.1|ENST00000439694.5	-	136784074,137031904,137032793,137181607	136785891,137031963,137032913,137181771	0.750000
NCI_H460	chr12	131371692	131371737	131371697	-	High_confidence	56	75	359	12.890922	5.821257	chr12	131371471	131371655	LTR|ERVL|LTR33A	-	chr12	131349192	131371833	MSTRG.6016.1	-	131349192,131353686,131371390	131352999,131353783,131371833	0.874652
NCI_H460	chr5	137560805	137560809	137560808	-	RAMPAGE_only	10	13	20	0.718157	3.576618	chr5	137560518	137560884	LTR|ERVL-MaLR|MLT1A0	-	chr5	137112493	137598379	SPOCK1|ENST00000503916.1	-	137112493,137140579,137267009,137505638,137598197	137112561,137140694,137267055,137505707,137598379	0.700000
NCI_H460	chr5	140700445	140700452	140700445	+	High_confidence	1616	1981	3407	122.338083	4.993321	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.984150
NCI_H460	chr7	8304055	8304086	8304068	+	High_confidence	10	11	40	1.436314	4.670018	chr7	8298113	8304140	LINE|L1|L1PA3	-	chr7	8303753	8349912	MSTRG.20714.4	+	8303753,8340382,8341016	8304155,8340556,8349912	0.850000
NCI_H460	chr15	21273509	21273513	21273512	-	RAMPAGE_only	9	9	17	0.610434	3.280639	chr15	21273139	21273669	LTR|ERVL|LTR33A_	+	chr15	21264706	21277666	MSTRG.7425.1	-	21264706,21270768,21273132,21277644	21268484,21270924,21273250,21277666	0.647059
NCI_H460	chr2	200887948	200887971	200887966	-	High_confidence	2	3	9	0.323171	3.000000	chr2	200887775	200888074	SINE|Alu|AluSx1	+	chr2	200871151	200887687	PPIL3|ENST00000415562.5	-	200871151,200876918,200881420,200882341,200885697,200887612	200871521,200877037,200881488,200882382,200885772,200887687	0.555556
NCI_H460	chr12	71118449	71118530	71118459	-	High_confidence	65	86	311	11.167345	5.398022	chr12	71118072	71124103	LINE|L1|L1PA2	+	chr12	71109993	71118247	MSTRG.5496.2	-	71109993,71115849,71118069	71110453,71115958,71118247	0.739550
NCI_H460	chr10	69087432	69087479	69087432	+	High_confidence	13	14	32	1.149052	4.244519	chr10	69087249	69087558	SINE|Alu|AluSx	+	chr10	69087445	69104811	SRGN|NM_001321053.1	+	69087445,69088027,69097083,69103870	69087660,69088236,69097231,69104811	0.875000
NCI_H460	chr5	75336495	75336522	75336495	+	High_confidence	3	3	10	0.359079	2.503258	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.800000
NCI_H460	chr7	27647204	27647228	27647207	-	High_confidence	4	9	26	0.933604	4.363713	chr7	27646996	27647430	DNA|TcMar-Tigger|MER44B	-	chr7	27531253	27647756	HIBADH|ENST00000425715.1	-	27531253,27538340,27542966,27629370,27632335,27647672	27531348,27538417,27543100,27629492,27632441,27647756	0.500000
NCI_H460	chr7	23722775	23722809	23722775	+	High_confidence	7	9	29	1.041328	4.106377	chr7	23721816	23723200	LINE|L1|L1P2	-	chr7	23722759	23754327	STK31|ENST00000529549.1	+	23722759,23727240,23729090,23752716,23754314	23722949,23727315,23729249,23752832,23754327	0.517241
NCI_H460	chr7	74744164	74744232	74744172	+	High_confidence	21	21	105	3.770325	4.704691	chr7	74744109	74744261	DNA|hAT-Charlie|MER117	+	chr7	74744343	74749452	GTF2I|ENST00000438130.6	+	74744343,74744757,74745882,74746336,74748014,74749024,74749267	74744508,74744941,74745941,74746411,74748116,74749090,74749452	0.952381
NCI_H460	chr7	102973265	102973321	102973265	-	High_confidence	181	205	777	27.900408	6.899899	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102883571	102973219	FBXL13|ENST00000477915.5	-	102883571,102884213,102913085,102926273,102963532,102968021,102973149	102883685,102884312,102913215,102926374,102963665,102968117,102973219	0.674389
NCI_H460	chr11	102615935	102615967	102615961	+	RAMPAGE_only	9	9	42	1.508130	3.677650	chr11	102615883	102616086	DNA|hAT-Tip100|MER115	-	chr11	102607366	102628070	AP000851.1|ENST00000542119.1	+	102607366,102626658,102627138,102627708	102607452,102626780,102627311,102628070	0.928571
NCI_H460	chrX	2174714	2174715	2174714	-	High_confidence	62	83	84	3.016260	4.819645	chrX	2174399	2174715	SINE|Alu|AluYc3	-	chrX	2173766	2174709	MSTRG.23621.1	-	2173766	2174709	0.976190
NCI_H460	chr14	101730400	101730405	101730400	+	High_confidence	131	131	408	14.650407	6.744993	chr14	101730210	101730580	LTR|ERVL-MaLR|THE1B	+	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.897059
NCI_H460	chr13	95740430	95740450	95740436	+	RAMPAGE_only	3	4	12	0.430894	3.418296	chr13	95733699	95740837	LINE|L1|L1PA2	-	chr13	95677157	95791843	DNAJC3|ENST00000376795.6	+	95677157,95709226,95723241,95725177,95760039,95760678,95763642,95763832,95785938,95787006,95790872	95677337,95709337,95723366,95725252,95760221,95760798,95763748,95763953,95786071,95787155,95791843	1.000000
NCI_H460	chr1	180872377	180872416	180872385	+	RAMPAGE_only	4	4	14	0.502710	3.378783	chr1	180866811	180872843	LINE|L1|L1HS	-	chr1	180632031	180886126	XPR1|ENST00000367589.3	+	180632031,180682359,180787752,180803387,180806061,180806473,180811406,180824752,180825164,180834873,180863707,180873802,180880075,180884005	180632270,180682411,180787854,180803611,180806211,180806557,180811488,180824943,180825344,180835045,180863874,180873942,180880297,180886126	1.000000
NCI_H460	chr4	110411332	110411335	110411332	+	RAMPAGE_only	3	3	6	0.215447	2.584963	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110365732	110506258	ENPEP|ENST00000510961.1	+	110365732,110488540,110491032,110500028,110506182	110365804,110488682,110491164,110500163,110506258	0.666667
NCI_H460	chr2	227164620	227164624	227164620	+	High_confidence	20	22	30	1.077236	4.506891	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.666667
NCI_H460	chr1	188905597	188905798	188905671	+	High_confidence	94	112	1050	37.703254	8.510864	chr1	188905457	188906002	LTR|ERVL|MLT2A2	+	chr1	188905687	189040157	MSTRG.2017.1	+	188905687,189036038,189036717	188953133,189036180,189040157	0.745714
NCI_H460	chr14	102235451	102235462	102235451	-	High_confidence	6	7	25	0.897697	3.539471	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.880000
NCI_H460	chr5	134875042	134875074	134875064	+	High_confidence	5	5	26	0.933604	4.251629	chr5	134874872	134875108	SINE|MIR|MIRb	-	chr5	134875095	134888180	TXNDC15|ENST00000508810.1	+	134875095,134887694	134875188,134888180	0.730769
NCI_H460	chr13	64075992	64076044	64076043	-	High_confidence	6	7	44	1.579946	4.749069	chr13	64075759	64076092	LTR|ERV1|MER52A	-	chr13	63851196	64076044	LINC00355|ENST00000650541.1	-	63851196,63853684,63990095,64002384,64003347,64034346,64075241	63851658,63853759,63990200,64002409,64003465,64034537,64076044	0.977273
NCI_H460	chr18	68790434	68790469	68790468	+	RAMPAGE_only	9	12	31	1.113144	4.181786	chr18	68784834	68790853	LINE|L1|L1PA2	-	chr18	68798079	69055189	CCDC102B|NM_024781.2	+	68798079,68836748,68838705,68846312,68874668,68897218,69010933,69054029	68798181,68837369,68838926,68846421,68874785,68897428,69011104,69055189	0.741935
NCI_H460	chr8	128415627	128415641	128415627	-	RAMPAGE_only	2	2	7	0.251355	2.521641	chr8	128415090	128415709	LINE|L2|L2a	+	chr8	128405268	128561126	MSTRG.22517.1	-	128405268,128406775,128414213,128414540,128415365,128421742,128423500,128428235,128561069	128406633,128406846,128414408,128414690,128420823,128421814,128423593,128428384,128561126	0.857143
NCI_H460	chr1	243269717	243269731	243269717	+	RAMPAGE_only	8	10	26	0.933604	3.509275	chr1	243269606	243269808	LINE|L1|L1MDb	-	chr1	243256059	243305087	MSTRG.2418.3	+	243256059,243270104,243270977,243274542,243286271,243293090,243304712,243305011	243256240,243270257,243271063,243274656,243286397,243293219,243304777,243305087	0.846154
NCI_H460	chr8	116648870	116648917	116648870	-	RAMPAGE_only	3	3	22	0.789973	3.732159	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
NCI_H460	chr15	32522568	32522569	32522568	-	RAMPAGE_only	8	8	9	0.323171	3.000000	chr15	32522454	32522752	SINE|Alu|AluSz6	+	chr15	32517396	32529896	MSTRG.7483.3	-	32517396,32523028,32524470,32528531,32529782	32522567,32523213,32524600,32528701,32529896	0.777778
NCI_H460	chr14	63101972	63101993	63101987	-	High_confidence	11	11	35	1.256775	4.686147	chr14	63101880	63102189	SINE|Alu|AluY	+	chr14	62949817	63102037	KCNH5|ENST00000394964.3	-	62949817,62980871,62987071,63001330,63006365,63016830,63101799	62950559,62981264,62987187,63001459,63006472,63016954,63102037	0.657143
NCI_H460	chr21	43332134	43332139	43332138	-	High_confidence	9	12	27	0.969512	3.810081	chr21	43331778	43332175	LTR|ERVL-MaLR|MLT1K	-	chr21	43322208	43332039	LINC00322|NR_103713.2	-	43322208,43326158,43331855	43322849,43326240,43332039	0.666667
NCI_H460	chr17	76345604	76345605	76345604	-	RAMPAGE_only	9	9	12	0.430894	3.277613	chr17	76345479	76345626	SINE|Alu|AluJb	+	chr17	76309485	76354149	PRPSAP1|ENST00000446526.7	-	76309485,76312869,76313820,76328716,76330042,76330550,76332262,76344670,76348528,76353533	76311700,76313016,76313891,76328862,76330098,76330666,76332435,76344737,76348581,76354149	0.750000
NCI_H460	chr16	71894417	71894430	71894425	+	High_confidence	4	4	15	0.538618	2.692381	chr16	71894254	71894545	SINE|Alu|AluSp	-	chr16	71894407	71930639	IST1|NM_001270976.1	+	71894407,71894720,71915625,71916461,71917046,71920738,71921342,71922473,71923287,71924768,71927613	71894481,71894858,71915728,71916642,71917134,71920822,71921453,71922680,71923380,71924817,71930639	0.866667
NCI_H460	chr18	68790689	68790743	68790742	+	RAMPAGE_only	18	20	112	4.021680	5.325958	chr18	68784834	68790853	LINE|L1|L1PA2	-	chr18	68798079	69055189	CCDC102B|NM_024781.2	+	68798079,68836748,68838705,68846312,68874668,68897218,69010933,69054029	68798181,68837369,68838926,68846421,68874785,68897428,69011104,69055189	0.946429
NCI_H460	chr20	8600660	8600661	8600660	+	High_confidence	30	32	38	1.364499	3.759413	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.789474
NCI_H460	chr20	10419716	10419717	10419716	-	RAMPAGE_only	6	6	8	0.287263	2.521641	chr20	10419482	10419944	DNA|TcMar-Tigger|MER44B	-	chr20	10405183	10431922	MKKS|ENST00000399054.6	-	10405183,10407615,10408627,10412529,10420527,10431683	10405687,10407726,10408803,10413931,10420758,10431922	0.875000
NCI_H460	chr11	61949811	61949852	61949811	+	High_confidence	18	19	87	3.123984	5.198201	chr11	61949804	61949945	SINE|MIR|MIR3	-	chr11	61949820	61964461	BEST1|ENST00000378043.8	+	61949820,61951770,61955106,61955717,61956843,61957386,61958145,61959497,61959891,61962254,61964103	61950427,61951958,61955201,61955951,61956998,61957464,61958298,61959578,61960043,61962893,61964461	0.977011
NCI_H460	chr10	102449836	102449840	102449836	+	High_confidence	3	3	12	0.430894	3.251629	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.833333
NCI_H460	chr4	128428000	128428006	128428000	+	High_confidence	9	9	17	0.610434	3.734522	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.823529
NCI_H460	chrX	131578790	131578859	131578790	-	High_confidence	4	4	37	1.328591	4.226628	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.864865
NCI_H460	chr10	5017963	5017972	5017969	-	High_confidence	16	17	62	2.226287	5.446971	chr10	5017765	5018153	LTR|ERVL-MaLR|MSTA	-	chr10	4989788	5017955	MSTRG.2494.4	-	4989788,4991830,4995318,4998624,4999199,5000549,5001513,5003751,5017899	4990038,4991913,4995865,4998747,4999277,5000666,5001681,5003922,5017955	0.887097
NCI_H460	chr9	39809800	39809859	39809858	-	High_confidence	28	38	157	5.637534	4.523568	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803664	39810063	MSTRG.22917.3	-	39803664,39809485,39809730	39803859,39809615,39810063	0.885350
NCI_H460	chr12	122064308	122064376	122064308	+	RAMPAGE_only	89	91	422	15.153117	6.758620	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.568720
NCI_H460	chr8	80084315	80084341	80084315	-	RAMPAGE_only	5	6	17	0.610434	3.327820	chr8	80084257	80084362	LTR|ERVL-MaLR|MLT1K	+	chr8	80034867	80080831	TPD52|NM_001025252.2	-	80034867,80042619,80051526,80053281,80064477,80080314	80038235,80042668,80051628,80053430,80064593,80080831	0.941176
NCI_H460	chr14	56244540	56244579	56244575	+	RAMPAGE_only	5	7	33	1.184959	4.366729	chr14	56243608	56244588	DNA|hAT-Charlie|Charlie25	+	chr14	56119108	56290293	PELI2|ENST00000561019.1	+	56119108,56178334,56279675,56288436,56290267	56119210,56178464,56279777,56288634,56290293	0.787879
NCI_H460	chr6	162056854	162056900	162056899	-	High_confidence	55	61	438	15.727643	6.421289	chr6	162056564	162057090	LTR|ERVL|MER68	+	chr6	161347424	162056926	MSTRG.20552.2	-	161347424,161360087,161386793,161548853,161569354,161785771,161973301,162054090,162056449	161350211,161360205,161386877,161549003,161569416,161785908,161973417,162054174,162056926	0.874429
NCI_H460	chr8	15417190	15417191	15417190	+	High_confidence	640	657	914	32.819785	6.191277	chr8	15417004	15417387	LTR|ERVL-MaLR|MSTA	+	chr8	15417214	15764418	MSTRG.21869.2	+	15417214,15623079,15650696,15659506,15662155,15673746,15730665,15743537,15748374,15757790,15764202	15417305,15623249,15650814,15659647,15662296,15673836,15730729,15743612,15748465,15757855,15764418	0.942013
NCI_H460	chr21	41186787	41186791	41186787	-	High_confidence	664	712	1115	40.037265	6.718221	chr21	41186600	41187083	LTR|ERV1|MER66B	-	chr21	41176445	41186788	PLAC4|ENST00000440221.2	-	41176445,41180471,41186122,41186447	41176786,41180573,41186342,41186788	0.872646
NCI_H460	chr5	150640300	150640315	150640314	+	High_confidence	6	7	14	0.502710	3.664498	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	1.000000
NCI_H460	chr11	93734829	93734839	93734838	-	High_confidence	4	4	9	0.323171	2.750000	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730282	93734661	TAF1D|ENST00000525928.5	-	93730282,93730676,93731149,93731752,93732243,93733086,93733349	93730447,93730712,93731216,93731799,93732291,93733121,93734661	0.777778
NCI_H460	chr2	10120434	10120435	10120434	+	High_confidence	40	48	55	1.974932	4.609496	chr2	10120422	10120535	SINE|Alu|FLAM_C	+	chr2	10120697	10131418	RRM2|ENST00000641198.1	+	10120697,10122754,10122982,10123386,10123735,10124716,10126874,10127086,10128847,10129040,10129233	10120882,10122897,10123057,10123530,10123852,10124850,10126969,10127220,10128952,10129154,10131418	0.618182
NCI_H460	chr18	66596202	66596256	66596255	-	RAMPAGE_only	29	29	166	5.960705	4.509142	chr18	66595018	66596800	LINE|L1|L1PA15	+	chr18	66505044	66604088	CDH19|ENST00000540086.5	-	66505044,66529844,66534985,66543970,66544718,66551093,66554404,66568415,66572009,66603953	66505302,66529966,66535107,66544224,66544903,66551258,66554524,66568710,66572316,66604088	0.993976
NCI_H460	chr5	84294287	84294301	84294289	-	RAMPAGE_only	5	7	19	0.682249	3.932138	chr5	84294101	84294410	SINE|Alu|AluY	+	chr5	83940599	84384386	EDIL3|ENST00000380138.3	-	83940599,83963204,84060299,84064699,84066450,84106648,84137240,84180392,84254083,84384307	83943568,83963360,84060484,84064844,84066606,84106830,84137354,84180521,84254212,84384386	0.736842
NCI_H460	chr10	32982542	32982550	32982549	+	High_confidence	6	9	12	0.430894	3.418296	chr10	32982518	32982768	SINE|Alu|AluSz6	-	chr10	32982540	33082102	ITGB1-DT|ENST00000414157.1	+	32982540,32985622,33081341	32982685,32985757,33082102	0.666667
NCI_H460	chr3	125937053	125937056	125937053	-	High_confidence	4	4	8	0.287263	2.521641	chr3	125936638	125942696	LINE|L1|L1PA2	+	chr3	125929274	125937044	ALG1L|NM_001195223.1	-	125929274,125930556,125931637,125932649,125933574,125934435,125936897	125929567,125930629,125931752,125932709,125933696,125934546,125937044	0.750000
NCI_H460	chr10	110496232	110496274	110496232	-	High_confidence	4	6	32	1.149052	4.265320	chr10	110496171	110496447	LINE|L2|L2b	+	chr10	110475103	110496204	AL355512.1|ENST00000607952.1	-	110475103,110496118	110475226,110496204	0.718750
NCI_H460	chr6	148526973	148527000	148526973	+	RAMPAGE_only	3	3	15	0.538618	3.235926	chr6	148526867	148527135	SINE|Alu|AluY	-	chr6	148524412	148552048	SASH1|ENST00000622663.1	+	148524412,148527452,148532796,148533770,148534750,148540442,148543679,148546014,148548294,148551424	148525365,148527596,148532966,148533980,148534901,148540556,148544818,148546146,148549732,148552048	0.666667
NCI_H460	chr4	76234502	76234534	76234518	-	High_confidence	6	6	18	0.646342	3.947703	chr4	76234334	76234657	LTR|ERV1|MER61A	-	chr4	76158759	76234536	SCARB2|ENST00000638295.1	-	76158759,76163224,76166249,76168402,76169866,76174143,76175790,76176436,76179516,76180953,76195706,76234302	76161751,76163383,76166301,76168476,76169985,76174313,76175910,76176528,76179705,76181101,76195864,76234536	0.500000
NCI_H460	chr14	51638082	51638112	51638110	-	RAMPAGE_only	2	5	8	0.287263	3.000000	chr14	51637996	51638291	SINE|Alu|AluJr4	+	chr14	51546628	51599952	FRMD6-AS2|NR_047477.2	-	51546628,51547706,51584165,51599826	51546820,51547883,51584283,51599952	0.750000
NCI_H460	chr2	229586867	229586927	229586905	-	RAMPAGE_only	6	6	49	1.759485	4.969274	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229357628	229714558	DNER|ENST00000341772.4	-	229357628,229366872,229388264,229407231,229418107,229447315,229477139,229512782,229546946,229585857,229588393,229591579,229714147	229358651,229367119,229388396,229407345,229418230,229447540,229477253,229512936,229547092,229586024,229588488,229591888,229714558	0.816327
NCI_H460	chr1	174238848	174238907	174238906	+	High_confidence	15	17	80	2.872629	5.466848	chr1	174233266	174239293	LINE|L1|L1PA2	-	chr1	174238821	174244320	RABGAP1L|ENST00000529474.2	+	174238821,174241482,174242981,174244297	174238949,174241657,174243179,174244320	0.700000
NCI_H460	chr4	75127206	75127272	75127263	-	RAMPAGE_only	51	75	320	11.490516	5.565941	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.959375
NCI_H460	chr20	8600707	8600739	8600738	+	High_confidence	25	31	126	4.524391	5.135628	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600725	8788523	PLCB1|ENST00000626966.2	+	8600725,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8600781,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788523	0.912698
NCI_H460	chr2	201115990	201116024	201116007	+	High_confidence	3	3	12	0.430894	2.855389	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.916667
NCI_H460	chr4	7754076	7754077	7754076	+	High_confidence	10	10	10	0.359079	3.321928	chr4	7753883	7754236	LTR|ERVL-MaLR|THE1A	+	chr4	7754089	7778928	AFAP1-AS1|NR_026892.1	+	7754089,7772203	7754159,7778928	0.700000
NCI_H460	chr6	33676246	33676278	33676246	+	RAMPAGE_only	11	16	47	1.687669	4.626950	chr6	33676226	33676457	SINE|MIR|MIRb	-	chr6	33621378	33696574	ITPR3|NM_002224.3	+	33621378,33640483,33655765,33657931,33658669,33659020,33659465,33662527,33662910,33663499,33663737,33664869,33665052,33665834,33667128,33667791,33668514,33668973,33670324,33670670,33671164,33672028,33673590,33674207,33675690,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33683206,33684019,33684356,33684597,33684773,33685358,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33621691,33640554,33655887,33658018,33658828,33659119,33659549,33662674,33663006,33663550,33663880,33664969,33665213,33665976,33667290,33667964,33668634,33669156,33670576,33670815,33671306,33672228,33673720,33674265,33675856,33676932,33677089,33677629,33678543,33678839,33680133,33680454,33680680,33682644,33683397,33684168,33684465,33684688,33684943,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696574	0.914894
NCI_H460	chr18	7047122	7047159	7047122	-	RAMPAGE_only	22	24	67	2.405827	4.727821	chr18	7047041	7047341	SINE|Alu|AluSc8	-	chr18	6941947	7117759	LAMA1|ENST00000579014.5	-	6941947,6943179,6947162,6948402,6949100,6950781,6955352,6956635,6958476,6959340,6961585,6961944,6964661,6965287,6966146,6971856,6973056,6974902,6975936,6977726,6978195,6980520,6982496,6983098,6985236,6985526,6986136,6992560,6993640,6995356,6997741,6999444,6999910,7002263,7007138,7008487,7009238,7010199,7011299,7011994,7013814,7015721,7016490,7017277,7023163,7024379,7025978,7032065,7032983,7034478,7035986,7037577,7038809,7040075,7042144,7044721,7046277,7049077,7050693,7079974,7080286,7117659	6942239,6943402,6947296,6948556,6949259,6950971,6955465,6956765,6958662,6959492,6961759,6962059,6964803,6965432,6966297,6971981,6973207,6975036,6976080,6977881,6978378,6980637,6982590,6983234,6985400,6985643,6986347,6992720,6993752,6995446,6997884,6999638,6999997,7002385,7007276,7008608,7009366,7010385,7011479,7012138,7014051,7015858,7016671,7017384,7023375,7024466,7026106,7032176,7033095,7034690,7036088,7037751,7038950,7040236,7043405,7044839,7046367,7049257,7050936,7080087,7080457,7117759	0.597015
NCI_H460	chr17	41521719	41521776	41521775	-	High_confidence	6	11	40	1.436314	4.807009	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41513745	41521774	KRT15|ENST00000474031.5	-	41513745,41515884,41516103,41516807,41518329,41521684	41515692,41516010,41516265,41516964,41518461,41521774	0.750000
NCI_H460	chr4	168138324	168138397	168138344	+	RAMPAGE_only	8	10	48	1.723577	5.095176	chr4	168138260	168138460	LINE|L1|L1PB4	-	chr4	168165183	168187690	ANXA10|ENST00000507278.5	+	168165183,168177739,168177889,168179216,168181682,168184558,168187365	168165326,168177793,168177983,168179312,168181741,168184681,168187690	0.854167
NCI_H460	chr3	190122039	190122075	190122054	-	High_confidence	3	3	13	0.466802	3.392747	chr3	190121809	190122109	SINE|Alu|AluSx	+	chr3	189988914	190121678	P3H2|ENST00000426003.1	-	189988914,189994093,189995289,190121536	189989038,189994283,189995442,190121678	0.769231
NCI_H460	chr4	168442396	168442409	168442408	-	RAMPAGE_only	6	9	16	0.574526	3.250000	chr4	168441989	168448038	LINE|L1|L1PA2	+	chr4	168396098	168456059	DDX60L|ENST00000505863.1	-	168396098,168400825,168403981,168405949,168406601,168415407,168415656,168416681,168420260,168421759,168422523,168423607,168427069,168430477,168432454,168433009,168441336,168448637,168453123,168456038	168396124,168400978,168404106,168406078,168406706,168415517,168415799,168416797,168420380,168421909,168422670,168423774,168427322,168430638,168432570,168433115,168441492,168448779,168453282,168456059	0.937500
NCI_H460	chr6	116058720	116058746	116058745	-	RAMPAGE_only	13	15	20	0.718157	3.684184	chr6	116058628	116058931	SINE|Alu|AluY	+	chr6	115931148	116060758	FRK|ENST00000606080.1	-	115931148,115943019,115944243,115956451,115967550,115968575,116003876,116059967	115942625,115943185,115944425,115956610,115967719,115968739,116003998,116060758	0.650000
NCI_H460	chr13	107232926	107232930	107232926	-	RAMPAGE_only	3	4	9	0.323171	2.750000	chr13	107232782	107233058	SINE|MIR|MIR	-	chr13	107163509	107866735	FAM155A|ENST00000375915.3	-	107163509,107210583,107865681	107170786,107210755,107866735	0.777778
NCI_H460	chr15	85320144	85320145	85320144	-	RAMPAGE_only	5	5	7	0.251355	2.807355	chr15	85320020	85320979	LINE|L1|L1MA4	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.571429
NCI_H460	chr4	81154213	81154222	81154221	-	High_confidence	42	42	98	3.518970	5.550295	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.938776
NCI_H460	chr1	42959441	42959491	42959478	+	High_confidence	19	20	53	1.903117	4.614344	chr1	42959490	42959595	LINE|L2|L2c	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.528302
NCI_H460	chr15	74354435	74354436	74354435	+	High_confidence	9	9	10	0.359079	2.725481	chr15	74354143	74354537	LTR|ERV1|LTR7	+	chr15	74354455	74364620	PPIAP46|ENST00000562009.1	+	74354455,74361513	74354685,74364620	0.500000
NCI_H460	chr14	100569561	100569631	100569611	-	High_confidence	5	5	39	1.400407	4.419391	chr14	100569527	100569624	LINE|L2|L2b	+	chr14	100538887	100569558	BEGAIN|ENST00000556188.5	-	100538887,100540495,100543857,100544999,100546500,100567910,100569426	100539315,100540579,100543965,100545066,100546662,100567939,100569558	0.820513
NCI_H460	chr6	43013392	43013393	43013392	-	High_confidence	22	22	23	0.825881	3.970573	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.956522
NCI_H460	chr8	116648820	116648840	116648839	-	RAMPAGE_only	2	2	9	0.323171	2.500000	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.888889
NCI_H460	chr8	75324606	75324685	75324606	-	High_confidence	32	38	129	4.632114	6.064414	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223702	75324741	CASC9|ENST00000522183.1	-	75223702,75324564	75224358,75324741	0.612403
NCI_H460	chrX	43176990	43176998	43176997	+	High_confidence	14	18	22	0.789973	4.095795	chrX	43176750	43177173	LTR|ERV1|MER61C	+	chrX	43176993	43226598	PINCR|ENST00000440955.1	+	43176993,43190591,43196196,43197315,43223315,43225029	43177205,43190723,43196369,43197375,43223397,43226598	0.772727
NCI_H460	chr1	78620056	78620057	78620056	+	High_confidence	7	9	9	0.323171	2.725481	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	1.000000
NCI_H460	chr5	172958875	172958919	172958918	+	High_confidence	45	63	250	8.976965	5.100900	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.980000
NCI_H460	chr10	132331515	132331541	132331528	-	High_confidence	3	3	10	0.359079	2.503258	chr10	132331498	132331624	LTR|ERVL|LTR16E1	-	chr10	132330280	132331837	STK32C|ENST00000456004.1	-	132330280,132331435	132330485,132331837	0.900000
NCI_H460	chr1	185257385	185257420	185257419	+	RAMPAGE_only	8	11	30	1.077236	4.211261	chr1	185251798	185257805	LINE|L1|L1PA2	-	chr1	185157158	185291781	SWT1|NM_017673.6	+	185157158,185160832,185166571,185168339,185174371,185180390,185181945,185184242,185184742,185190548,185202653,185204699,185206624,185214506,185221848,185231576,185271322,185276603,185290673	185157314,185160925,185166652,185168398,185175113,185180450,185182057,185184344,185184931,185190642,185202799,185204863,185206763,185214655,185222036,185231708,185271389,185276668,185291781	0.766667
NCI_H460	chr17	47067498	47067534	47067498	-	High_confidence	82	92	529	18.995259	5.786280	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.922495
NCI_H460	chr21	33945809	33945810	33945809	-	RAMPAGE_only	17	17	17	0.610434	3.337175	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
NCI_H460	chr1	240462962	240462990	240462967	+	RAMPAGE_only	4	4	19	0.682249	3.932138	chr1	240462625	240463064	LINE|L2|L2c	-	chr1	240472097	240474709	FMN2|ENST00000496950.1	+	240472097,240472371,240474127	240472126,240472453,240474709	0.736842
NCI_H460	chrX	24077184	24077329	24077257	+	RAMPAGE_only	10	16	130	4.668022	4.058783	chrX	24077071	24077365	SINE|Alu|AluSx	-	chrX	24054947	24078810	EIF2S3|NM_001415.3	+	24054947,24055614,24057420,24057632,24060087,24062415,24064200,24065997,24067963,24071557,24073090,24076721	24055037,24055678,24057548,24057754,24060182,24062574,24064335,24066092,24068108,24071727,24073263,24078810	1.000000
NCI_H460	chr18	12608049	12608074	12608073	-	RAMPAGE_only	3	3	11	0.394986	3.095795	chr18	12607874	12608174	SINE|Alu|AluY	+	chr18	12449505	12636340	SPIRE1|ENST00000440472.6	-	12449505,12452254,12453067,12454345,12463350,12464867,12479698,12493071,12496015,12506476,12512453,12535475,12546673,12588375,12635061,12636323	12449896,12452443,12453138,12454483,12463493,12464958,12479871,12493201,12496102,12506641,12512531,12535601,12546904,12588419,12635096,12636340	1.000000
NCI_H460	chr1	219092374	219092384	219092374	-	RAMPAGE_only	7	8	12	0.430894	3.022055	chr1	219088450	219094763	LINE|L1|L1MA4	+	chr1	219080972	219173788	LYPLAL1-AS1|NR_038845.1	-	219080972,219086494,219149938,219156119,219173469	219081943,219086660,219150031,219156199,219173788	0.500000
NCI_H460	chr8	61762467	61762510	61762509	-	RAMPAGE_only	19	19	132	4.739838	6.170151	chr8	61762175	61762546	DNA|TcMar-Tigger|MER6A	-	chr8	61759093	61765969	AC091173.1|ENST00000505627.2	-	61759093,61765890	61761764,61765969	0.530303
NCI_H460	chr8	8244665	8244670	8244665	-	High_confidence	6	7	15	0.538618	2.985228	chr8	8244525	8244922	LTR|ERV1|MER48	+	chr8	8237673	8244667	ALG1L13P|ENST00000523017.5	-	8237673,8238190,8239494,8240428,8241321,8242786,8244459	8237719,8238301,8239554,8240549,8241400,8242926,8244667	0.933333
NCI_H460	chr14	106845825	106845877	106845850	-	RAMPAGE_only	8	9	57	2.046748	5.040362	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106810441	106811131	IGHV3-74|ENST00000424969.2	-	106810441,106810849	106810746,106811131	0.543860
NCI_H460	chr12	39369893	39369894	39369893	-	RAMPAGE_only	9	9	10	0.359079	3.169925	chr12	39369860	39369969	LINE|Penelope|Penelope1_Vert	+	chr12	39357250	39367927	KIF21A|ENST00000552908.1	-	39357250,39358177,39363097,39366349,39367029,39367882	39357437,39358373,39363213,39366517,39367188,39367927	0.900000
NCI_H460	chr16	30445873	30445877	30445876	-	High_confidence	62	109	180	6.463415	6.350604	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.966667
NCI_H460	chr1	75375927	75376025	75376024	-	RAMPAGE_only	5	5	32	1.149052	4.272925	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.812500
NCI_H460	chr15	52100532	52100544	52100538	-	High_confidence	269	401	1191	42.766263	7.347572	chr15	52100279	52100861	LTR|ERVL|MER73	-	chr15	52056674	52100523	AC023906.5|ENST00000558607.1	-	52056674,52100469	52057255,52100523	0.836272
NCI_H460	chr7	76109074	76109092	76109091	-	High_confidence	18	22	49	1.759485	4.961649	chr7	76108929	76109272	LTR|ERV1|MER61A	-	chr7	76090430	76108779	GTF2IP7|ENST00000434037.1	-	76090430,76093296,76099439,76099897,76108230,76108434	76092166,76093401,76099514,76099956,76108309,76108779	0.612245
NCI_H460	chr6	2881285	2881286	2881285	-	High_confidence	33	33	33	1.184959	4.559546	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.878788
NCI_H460	chr13	51080845	51080846	51080845	-	High_confidence	13	15	17	0.610434	3.750000	chr13	51078923	51080846	LINE|L1|L1PA6	-	chr13	51016107	51080862	GUCY1B2|ENST00000532104.1	-	51016107,51016915,51020397,51024099,51025333,51026701,51029593,51034002,51048219,51062820,51065950,51080706	51016327,51017064,51020718,51024316,51025437,51026813,51029693,51034159,51048314,51062894,51066157,51080862	0.764706
NCI_H460	chr6	82101686	82101765	82101686	-	RAMPAGE_only	21	27	126	4.524391	5.629522	chr6	82101303	82107312	LINE|L1|L1PA2	+	chr6	81845184	81933480	LINC02542|ENST00000418567.1	-	81845184,81928856,81933428	81845909,81928901,81933480	0.626984
NCI_H460	chr3	27194193	27194198	27194197	-	High_confidence	11	12	20	0.718157	2.663865	chr3	27194122	27194414	SINE|Alu|AluYc3	-	chr3	27174440	27194231	NEK10|ENST00000460447.1	-	27174440,27174649,27192028,27194060	27174525,27174833,27192242,27194231	0.950000
NCI_H460	chr4	138252212	138252251	138252230	-	High_confidence	113	163	385	13.824527	6.771491	chr4	138252132	138252402	SINE|Alu|AluSx1	-	chr4	138164096	138252310	MSTRG.17887.1	-	138164096,138170303,138179216,138180640,138182296,138183201,138214584,138219265,138223198,138232266,138236324,138241792,138252038	138170204,138174787,138179394,138180790,138182393,138183305,138214629,138219365,138223324,138232382,138236451,138242061,138252310	0.919481
NCI_H460	chr2	47369479	47369527	47369481	+	High_confidence	4	6	22	0.789973	4.106603	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369147	47387028	EPCAM|NM_002354.2	+	47369147,47373462,47373807,47375233,47377013,47378952,47379768,47385165,47386571	47369581,47373570,47374048,47375299,47377077,47379054,47379969,47385210,47387028	0.954545
NCI_H460	chr5	104079907	104079919	104079918	+	High_confidence	3	5	8	0.287263	2.807355	chr5	104074362	104080381	LINE|L1|L1PA2	-	chr5	104079910	104105403	LINC02163|ENST00000514769.1	+	104079910,104080907,104081879,104104173,104105359	104080124,104081041,104081947,104104287,104105403	0.750000
NCI_H460	chr10	65570509	65570536	65570519	+	High_confidence	46	72	292	10.485095	6.156187	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.794521
NCI_H460	chr14	28318034	28318037	28318036	+	High_confidence	3	5	8	0.287263	2.521641	chr14	28312502	28318523	LINE|L1|L1PA2	-	chr14	28318140	28418612	AL139023.1|ENST00000548280.1	+	28318140,28405425,28418543	28318532,28405472,28418612	0.500000
NCI_H460	chr1	45522977	45523012	45522977	-	High_confidence	4	4	17	0.610434	3.750000	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45514506	45523047	PRDX1|ENST00000424390.1	-	45514506,45514872,45515653,45518937,45522777	45514637,45514995,45515807,45519054,45523047	0.941176
NCI_H460	chr14	51554642	51554696	51554642	+	High_confidence	19	32	78	2.800813	5.198264	chr14	51553917	51555014	LINE|L1|L1MC3	+	chr14	51554659	51579297	FRMD6|ENST00000555952.5	+	51554659,51570347,51578971	51554805,51570410,51579297	0.833333
NCI_H460	chr6	116058794	116058827	116058826	-	RAMPAGE_only	10	10	19	0.682249	3.681881	chr6	116058628	116058931	SINE|Alu|AluY	+	chr6	115931148	116060758	FRK|ENST00000606080.1	-	115931148,115943019,115944243,115956451,115967550,115968575,116003876,116059967	115942625,115943185,115944425,115956610,115967719,115968739,116003998,116060758	0.684211
NCI_H460	chr10	93431409	93431449	93431448	-	RAMPAGE_only	14	17	40	1.436314	4.665312	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	1.000000
NCI_H460	chr13	114004955	114004969	114004955	-	RAMPAGE_only	3	4	6	0.215447	2.584963	chr13	114004202	114005208	LINE|L1|L1PB4	+	chr13	113977782	114077979	RASA3|NM_001320822.1	-	113977782,113981674,113992484,113996530,113999584,114000825,114007532,114009386,114011170,114013141,114015208,114016196,114017236,114018103,114018762,114021403,114024278,114027388,114027846,114029810,114040999,114052051,114073719,114077802	113979422,113981858,113992588,113996739,113999667,114000932,114007606,114009464,114011248,114013248,114015332,114016271,114017351,114018252,114018919,114021508,114024355,114027461,114027927,114029887,114041094,114052155,114073837,114077979	0.666667
NCI_H460	chr7	158432084	158432129	158432103	-	RAMPAGE_only	5	5	24	0.861789	3.762267	chr7	158432037	158432102	LTR|ERVL-MaLR|MLT1K	-	chr7	157539051	158541776	PTPRN2|NM_001308268.1	-	157539051,157548945,157568901,157571439,157576612,157578020,157595237,157604001,157621361,157656356,157682724,157898672,158081297,158110828,158133676,158136654,158138293,158166930,158192326,158205170,158316818,158489734,158541425	157540785,157549019,157568966,157571493,157576779,157578140,157595315,157604075,157621509,157656551,157682937,157898737,158081377,158110915,158134059,158136695,158138515,158167291,158192495,158205273,158316932,158489785,158541776	0.541667
NCI_H460	chr1	112936000	112936022	112936000	-	High_confidence	24	25	78	2.800813	5.078492	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	1.000000
NCI_H460	chr20	407398	407436	407398	+	High_confidence	2	3	11	0.394986	2.721928	chr20	406837	407578	LINE|L2|L2a	-	chr20	407497	417822	RBCK1|ENST00000411647.5	+	407497,408690,409880,417525,417731	407671,408779,410025,417619,417822	0.727273
NCI_H460	chr8	51450015	51450021	51450015	-	RAMPAGE_only	4	4	9	0.323171	2.641604	chr8	51449819	51450452	LTR|ERV1|MER41B	-	chr8	51319576	51809445	PXDNL|NM_144651.4	-	51319576,51320783,51339623,51345832,51371872,51374596,51408066,51411249,51413149,51423574,51426645,51447003,51449001,51453518,51457497,51472186,51474971,51483642,51499698,51556839,51592626,51654688,51809180	51320022,51320897,51339753,51345947,51372081,51374731,51409561,51411407,51413258,51423731,51426758,51447162,51449118,51453785,51457667,51472304,51475141,51483714,51499770,51556911,51592698,51654760,51809445	0.555556
NCI_H460	chr1	188888539	188888556	188888555	-	RAMPAGE_only	21	22	45	1.615854	4.913977	chr1	188888422	188889119	DNA|TcMar-Tigger|MER44D	+	chr1	188869476	188892591	MSTRG.2016.2	-	188869476	188892591	0.866667
NCI_H460	chr11	27220088	27220089	27220088	-	High_confidence	7	7	9	0.323171	3.000000	chr11	27219703	27225730	LINE|L1|L1PA2	+	chr11	27063019	27220086	BBOX1-AS1|ENST00000530430.1	-	27063019,27066491,27151049,27217316,27219686	27063060,27066662,27151152,27217480,27220086	0.555556
NCI_H460	chr11	72111496	72111497	72111496	-	High_confidence	7	7	8	0.287263	2.521641	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.875000
NCI_H460	chr6	87329277	87329280	87329277	-	High_confidence	16	16	25	0.897697	4.142915	chr6	87323278	87329278	LINE|L1|L1PA3	-	chr6	87282977	87329278	GJB7|ENST00000525899.5	-	87282977,87322865,87329137	87284939,87323043,87329278	0.720000
NCI_H460	chr6	53617008	53617012	53617008	-	High_confidence	12	12	21	0.754065	4.121928	chr6	53616804	53617217	LTR|ERVL-MaLR|MSTA	-	chr6	53561288	53617007	AL033397.1|ENST00000502390.5	-	53561288,53564749,53569422,53573199,53616885	53564420,53564889,53569605,53573275,53617007	0.857143
NCI_H460	chr15	82093996	82094032	82094031	+	RAMPAGE_only	14	14	94	3.375339	4.527252	chr15	82093781	82094459	DNA|TcMar-Tigger|Tigger7	+	chr15	82088632	82095707	LINC01583|ENST00000559788.1	+	82088632,82091726,82095481	82088728,82091935,82095707	0.957447
NCI_H460	chr8	128560339	128560448	128560445	-	High_confidence	6	7	71	2.549458	4.866380	chr8	128560296	128560656	LINE|L2|L2c	+	chr8	128559713	128561126	LINC00824|ENST00000520824.1	-	128559713,128561069	128560548,128561126	0.901408
NCI_H460	chr2	240022181	240022184	240022181	-	RAMPAGE_only	7	7	13	0.466802	2.918296	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.923077
NCI_H460	chr6	127330859	127330929	127330859	-	High_confidence	4	4	25	0.897697	3.703465	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.920000
NCI_H460	chr1	45522855	45522859	45522858	-	High_confidence	1716	1729	3691	132.535915	7.326218	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.984286
NCI_H460	chr19	53865343	53865381	53865359	+	High_confidence	21	22	114	4.093496	4.697101	chr19	53865313	53865624	SINE|Alu|AluSx	-	chr19	53865348	53874256	MSTRG.12655.3	+	53865348,53869753,53873527	53865728,53869838,53874256	0.973684
NCI_H460	chr18	39800271	39800305	39800293	-	High_confidence	12	12	52	1.867209	5.265467	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.576923
NCI_H460	chr11	83725246	83725279	83725246	-	High_confidence	3	3	18	0.646342	3.503258	chr11	83725213	83725325	DNA|hAT-Tip100|MamTip2	+	chr11	83469286	83725403	MSTRG.4309.16	-	83469286,83471625,83472726,83484128,83532707,83541681,83633210,83725169	83469373,83471727,83472777,83484228,83532783,83541858,83633325,83725403	0.777778
NCI_H460	chr1	188822668	188822678	188822668	-	High_confidence	3	4	10	0.359079	3.169925	chr1	188822207	188822962	LINE|L1|L1M4b	+	chr1	188781893	188822919	MSTRG.2015.1	-	188781893,188814464,188822181	188782413,188814611,188822919	0.700000
NCI_H460	chr9	62376790	62376801	62376800	-	High_confidence	18	18	45	1.615854	4.354936	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.911111
NCI_H460	chr2	102020879	102020882	102020879	+	RAMPAGE_only	4	4	10	0.359079	2.721928	chr2	102020844	102021022	DNA|hAT-Charlie|MER5A	+	chr2	102022062	102028414	IL1R2|ENST00000474085.5	+	102022062,102024532,102026110,102028225	102022249,102024668,102026253,102028414	0.800000
NCI_H460	chr22	50330663	50330680	50330663	+	RAMPAGE_only	2	2	9	0.323171	2.725481	chr22	50330424	50330745	SINE|Alu|AluY	+	chr22	50343303	50445090	PPP6R2|ENST00000359139.7	+	50343303,50372019,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439697,50439960,50440821,50443865,50444202	50343550,50372150,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50445090	0.888889
NCI_H460	chr10	6737490	6737492	6737490	+	High_confidence	16	22	25	0.897697	4.055958	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.920000
NCI_H460	chr4	49495020	49495056	49495044	-	RAMPAGE_only	6	6	41	1.472222	4.175551	chr4	49494957	49495361	LTR|ERV1|MER61C	+	chr4	49486925	49489554	AC119751.3|ENST00000399720.4	-	49486925,49488433,49489269	49487096,49488647,49489554	0.829268
NCI_H460	chr6	73802811	73802833	73802824	+	RAMPAGE_only	7	7	31	1.113144	3.568875	chr6	73802695	73802998	SINE|Alu|AluSq2	-	chr6	73722940	73810172	CD109|ENST00000649530.1	+	73722940,73723250,73730343,73736382,73756642,73758943,73762383,73762740,73763575,73765929,73766758,73766947,73768054,73771428,73780423,73781258,73782613,73783706,73785363,73787233,73788467,73792625,73803219,73806843,73808082,73809983	73723159,73723279,73730574,73736508,73756682,73759028,73762480,73762882,73763685,73766154,73766860,73767010,73768231,73771581,73780498,73781319,73782755,73783824,73785477,73787452,73788612,73792802,73803301,73807072,73808248,73810172	0.774194
NCI_H460	chr8	75278751	75278774	75278773	-	High_confidence	2	2	7	0.251355	2.584963	chr8	75278367	75284402	LINE|L1|L1PA4	+	chr8	75223768	75278497	CASC9|ENST00000521147.1	-	75223768,75278356	75224358,75278497	0.571429
NCI_H460	chr12	6493539	6493590	6493553	-	High_confidence	3	3	16	0.574526	2.923231	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	0.937500
NCI_H460	chr4	74224043	74224127	74224126	+	RAMPAGE_only	34	38	169	6.068429	6.111963	chr4	74224092	74224549	LINE|L1|L1M7	-	chr4	74194039	74302598	MTHFD2L|ENST00000492183.5	+	74194039,74199793,74201262,74225301,74281424,74301696	74195838,74199946,74201370,74225394,74281550,74302598	0.816568
NCI_H460	chr4	188109602	188109603	188109602	-	High_confidence	61	71	78	2.800813	5.649776	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188091372	188109602	MSTRG.18119.6	-	188091372,188097060,188097323,188101055,188104836,188105179,188109242	188091941,188097161,188099175,188101250,188104932,188105590,188109602	0.948718
NCI_H460	chr10	93431493	93431504	93431493	-	RAMPAGE_only	2	4	10	0.359079	2.503258	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.900000
NCI_H460	chr6	13794238	13794275	13794241	-	RAMPAGE_only	17	17	57	2.046748	3.950407	chr6	13794117	13794268	SINE|Alu|FLAM_C	-	chr6	13787133	13801345	MCUR1|ENST00000607303.1	-	13787133,13788645,13791877,13793893,13798832,13800340,13801287	13787355,13788704,13791992,13793947,13798904,13800382,13801345	0.824561
NCI_H460	chr2	9554953	9554965	9554953	-	High_confidence	11	11	34	1.220867	4.635007	chr2	9554869	9555063	DNA|hAT-Tip100?|MamRep1879	-	chr2	9488636	9554729	ADAM17|ENST00000648548.1	-	9488636,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152,9551474,9554708	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526264,9527954,9535922,9536828,9543285,9551757,9554729	0.794118
NCI_H460	chr2	38086213	38086218	38086213	-	High_confidence	180	188	296	10.628727	5.641878	chr2	38086114	38086512	LTR|ERV1|LTR7	-	chr2	38080931	38086208	MSTRG.13026.1	-	38080931,38085966	38081208,38086208	0.668919
NCI_H460	chr8	75278479	75278574	75278573	-	High_confidence	19	21	154	5.529811	6.185246	chr8	75278367	75284402	LINE|L1|L1PA4	+	chr8	75223768	75278497	CASC9|ENST00000521147.1	-	75223768,75278356	75224358,75278497	0.675325
NCI_H460	chr11	85716651	85716654	85716651	-	High_confidence	44	49	77	2.764905	4.910578	chr11	85716605	85716654	LINE|L2|L2c	+	chr11	85709447	85716661	SYTL2|ENST00000532221.5	-	85709447,85711112,85714412,85716346	85709500,85711232,85714507,85716661	0.805195
NCI_H460	chr15	53684583	53684662	53684583	-	High_confidence	56	63	471	16.912603	6.482134	chr15	53684199	53690229	LINE|L1|L1PA3	+	chr15	53515162	53684627	MSTRG.7909.5	-	53515162,53523217,53597078,53609512,53613665,53615425,53665571,53684145	53517754,53523322,53597274,53609592,53613757,53616243,53665768,53684627	0.993631
NCI_H460	chr11	123061302	123061328	123061302	-	High_confidence	4	5	16	0.574526	2.866248	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.812500
NCI_H460	chr15	52057155	52057183	52057182	-	RAMPAGE_only	7	7	12	0.430894	3.418296	chr15	52056200	52057579	LINE|L2|L2a	+	chr15	52056674	52100523	AC023906.5|ENST00000558607.1	-	52056674,52100469	52057255,52100523	0.583333
NCI_H460	chr5	72846234	72846267	72846266	+	RAMPAGE_only	4	4	20	0.718157	3.521928	chr5	72846047	72846453	LINE|L1|L1ME3A	+	chr5	72848102	72914388	TNPO1|NM_153188.2	+	72848102,72848384,72851243,72855773,72861807,72865595,72872638,72875614,72877227,72882466,72883063,72887069,72888077,72889785,72891809,72893138,72893376,72893615,72896457,72897055,72900005,72900973,72903708,72905302,72908708	72848251,72848498,72851319,72855923,72861914,72865729,72872720,72875737,72877346,72882527,72883232,72887222,72888303,72889957,72891896,72893246,72893535,72893703,72896556,72897151,72900081,72901073,72903783,72905445,72914388	1.000000
NCI_H460	chr17	59892716	59892724	59892716	-	High_confidence	13	15	39	1.400407	4.733870	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.820513
NCI_H460	chr12	104287706	104287707	104287706	+	High_confidence	5	7	8	0.287263	2.500000	chr12	104287727	104287918	SINE|MIR|MIR	+	chr12	104287367	104348644	TXNRD1|ENST00000524698.5	+	104287367,104288930,104311289,104313244,104315776,104318912,104319469,104321090,104325336,104326346,104327514,104331533,104334236,104339138,104348352	104287431,104289040,104311412,104313317,104315896,104319055,104319585,104321316,104325429,104326423,104327671,104331641,104334332,104339273,104348644	0.875000
NCI_H460	chrX	54548232	54548239	54548232	+	RAMPAGE_only	3	3	9	0.323171	2.503258	chrX	54548081	54548232	LINE|CR1|L3	-	chrX	54530241	54560763	GNL3L|ENST00000360845.2	+	54530241,54532519,54539039,54540134,54541272,54542954,54543206,54544222,54548228,54550962,54551567,54551831,54552291,54554564,54558435,54560519	54530419,54532585,54539101,54540242,54541389,54543038,54543342,54544326,54548373,54551050,54551742,54551974,54552428,54554692,54558655,54560763	1.000000
NCI_H460	chr18	659659	659714	659713	+	RAMPAGE_only	8	8	33	1.184959	3.287601	chr18	659744	659794	LINE|L2|L2a	+	chr18	657742	673484	TYMS|ENST00000323224.7	+	657742,659640,662145,670691,671379,672859	657947,659714,662320,670867,671451,673484	0.939394
NCI_H460	chr7	74727456	74727520	74727456	-	RAMPAGE_only	2	4	24	0.861789	3.803509	chr7	74727429	74727565	SINE|MIR|MIRb	+	chr7	74688938	74728765	AC211433.1|ENST00000450426.6	-	74688938,74700209,74727401,74728704	74689271,74700380,74727522,74728765	0.625000
NCI_H460	chr5	27472283	27472304	27472283	+	High_confidence	113	128	408	14.650407	7.114817	chr5	27472073	27472487	LTR|ERV1|MER61C	+	chr5	27472291	27496401	PURPL|ENST00000510165.5	+	27472291,27475534,27477638,27494234,27495948	27472519,27475695,27477801,27494335,27496401	0.517157
NCI_H460	chr14	102083094	102083106	102083105	-	RAMPAGE_only	3	3	7	0.251355	2.584963	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.857143
NCI_H460	chr10	32982575	32982616	32982591	+	High_confidence	6	7	30	1.077236	4.513153	chr10	32982518	32982768	SINE|Alu|AluSz6	-	chr10	32982540	33082102	ITGB1-DT|ENST00000414157.1	+	32982540,32985622,33081341	32982685,32985757,33082102	0.500000
NCI_H460	chr9	100527225	100527229	100527225	+	RAMPAGE_only	112	136	201	7.217480	5.603801	chr9	100527228	100533251	LINE|L1|L1PA2	+	chr9	100473237	100577636	TMEFF1|NM_003692.4	+	100473237,100498764,100509004,100513306,100516674,100547743,100550094,100561396,100572517,100576515	100473740,100498874,100509134,100513333,100516771,100547892,100550160,100561520,100572676,100577636	0.925373
NCI_H460	chr1	148305163	148305173	148305163	-	RAMPAGE_only	18	18	49	1.759485	4.839200	chr1	148305024	148305382	LINE|L1|L1MEc	-	chr1	148290889	148297271	LINC01138|ENST00000434245.3	-	148290889,148292913,148295749,148296123,148296272,148297128	148291301,148293048,148295913,148296182,148296499,148297271	0.918367
NCI_H460	chr1	154976020	154976046	154976031	+	High_confidence	54	63	159	5.709350	4.620441	chr1	154975847	154976087	LINE|L1|L1PREC2	+	chr1	154975538	154978916	CKS1B|ENST00000473344.1	+	154975538,154977986,154978724	154975608,154978114,154978916	0.867925
NCI_H460	chr2	221501544	221501565	221501544	-	High_confidence	10	10	21	0.754065	3.346439	chr2	221501442	221501654	SINE|MIR|MIRb	-	chr2	221457888	221501636	MSTRG.14326.10	-	221457888,221482351,221501016,221501536	221457990,221482690,221501172,221501636	0.857143
NCI_H460	chr15	69080874	69080891	69080890	+	High_confidence	56	58	127	4.560298	6.206919	chr15	69080204	69081232	LINE|L1|L1M7	-	chr15	69080869	69095807	MSTRG.8092.8	+	69080869,69090914,69094700	69081376,69092242,69095807	0.818898
NCI_H460	chr6	118651542	118651602	118651563	-	High_confidence	15	15	110	3.949865	5.840125	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.990909
NCI_H460	chr14	105024993	105025023	105025022	-	RAMPAGE_only	13	13	56	2.010840	5.070098	chr14	105024875	105025057	LTR|ERVL-MaLR|MLT1H	-	chr14	105009935	105027301	MSTRG.7369.2	-	105009935,105024872,105027222	105011935,105025216,105027301	0.964286
NCI_H460	chr7	93591534	93591658	93591589	+	High_confidence	32	32	234	8.402440	6.253020	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591287	93818515	MSTRG.21200.1	+	93591287,93807203	93591771,93818515	0.696581
NCI_H460	chr18	63700853	63700884	63700856	+	High_confidence	49	104	383	13.752711	6.935652	chr18	63700789	63701086	LTR|ERVL|LTR16E2	+	chr18	63700832	63723893	MSTRG.11602.2	+	63700832,63701577,63702872,63710178,63711334,63712564,63716034,63720012,63720830,63722994	63700941,63701669,63703006,63710361,63711394,63712693,63716152,63720155,63720986,63723893	0.506527
NCI_H460	chr2	58113033	58113037	58113033	+	RAMPAGE_only	5	5	10	0.359079	2.921928	chr2	58113028	58113330	SINE|Alu|AluSg	+	chr2	58046714	58159784	VRK2|ENST00000440705.6	+	58046714,58048880,58084088,58084880,58086338,58088340,58089630,58123100,58131807,58135140,58139665,58146315,58159348	58046821,58048967,58084138,58084950,58086426,58088446,58089723,58123233,58131928,58135199,58139832,58146474,58159784	0.500000
NCI_H460	chr12	53464759	53464801	53464773	+	RAMPAGE_only	3	3	17	0.610434	3.454822	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	1.000000
NCI_H460	chr2	153871911	153871947	153871921	+	High_confidence	12	13	44	1.579946	4.768947	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.954545
NCI_H460	chr2	38082965	38083007	38082998	+	High_confidence	14	14	81	2.908537	5.237003	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.950617
NCI_H460	chr18	34557929	34557934	34557929	+	High_confidence	5	5	10	0.359079	3.169925	chr18	34552378	34558395	LINE|L1|L1PA2	-	chr18	34557978	34806255	DTNA|ENST00000590598.5	+	34557978,34679467,34755975,34765960,34794036,34806218	34558135,34679592,34756043,34766041,34794250,34806255	0.600000
NCI_H460	chr1	238486003	238486037	238486034	-	High_confidence	33	61	283	10.161925	6.331920	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.802120
NCI_H460	chr20	37298760	37298761	37298760	+	RAMPAGE_only	16	16	16	0.574526	3.875000	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
NCI_H460	chr18	34558007	34558008	34558007	+	High_confidence	4	4	6	0.215447	2.584963	chr18	34552378	34558395	LINE|L1|L1PA2	-	chr18	34557978	34806255	DTNA|ENST00000590598.5	+	34557978,34679467,34755975,34765960,34794036,34806218	34558135,34679592,34756043,34766041,34794250,34806255	0.666667
NCI_H460	chr5	137560698	137560702	137560698	-	RAMPAGE_only	494	809	1462	52.497293	8.294508	chr5	137560518	137560884	LTR|ERVL-MaLR|MLT1A0	-	chr5	136975297	137499348	SPOCK1|ENST00000394945.5	-	136975297,136979331,136985139,136988421,136992483,137067714,137112434,137140579,137267009,137498372,137499178	136978844,136979469,136985202,136988643,136992600,137067829,137112561,137140694,137267055,137498558,137499348	0.577291
NCI_H460	chr4	39032687	39032709	39032708	-	High_confidence	4	4	8	0.287263	3.000000	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	39028374	39032720	TMEM156|ENST00000495029.1	-	39028374,39032225,39032641	39028597,39032443,39032720	0.875000
NCI_H460	chr9	26936437	26936459	26936451	-	RAMPAGE_only	4	4	21	0.754065	4.070656	chr9	26936385	26936858	LINE|L1|L1M4c	+	chr9	26925892	26946983	PLAA|ENST00000523212.1	-	26925892,26926392,26928099,26928307,26935012,26946896	26925960,26926560,26928220,26928408,26935197,26946983	0.952381
NCI_H460	chr1	84174501	84174502	84174501	+	RAMPAGE_only	12	12	16	0.574526	2.733459	chr1	84174125	84174565	LINE|L2|L2c	+	chr1	84178834	84184046	PRKACB|ENST00000467507.1	+	84178834,84182199,84184036	84179238,84182328,84184046	0.937500
NCI_H460	chr1	15357239	15357263	15357262	+	High_confidence	8	9	29	1.041328	3.986188	chr1	15357224	15357265	SINE|MIR|MIRb	+	chr1	15357790	15364317	FHAD1|ENST00000483120.1	+	15357790,15360477,15362641,15363740	15358283,15360703,15362726,15364317	0.896552
NCI_H460	chr19	27746229	27746260	27746259	-	High_confidence	3	3	7	0.251355	2.521641	chr19	27745823	27746290	LTR|ERVK|LTR22B1	+	chr19	27730272	27746230	LINC00662|ENST00000561521.1	-	27730272,27732795,27746097	27732447,27732967,27746230	1.000000
NCI_H460	chr6	140898421	140898430	140898421	-	High_confidence	134	210	521	18.707996	6.789959	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140898425	MSTRG.20406.2	-	140845957,140852818,140898187	140846304,140852924,140898425	0.760077
NCI_H460	chr5	130337951	130337953	130337952	+	High_confidence	76	85	117	4.201220	6.149300	chr5	130337852	130338318	LTR|ERVL|MLT2D	-	chr5	130337404	130382015	MSTRG.18920.1	+	130337404,130337651,130362690,130368142,130378326	130337562,130338082,130362834,130368323,130382015	0.735043
NCI_H460	chr7	22562052	22562089	22562070	+	RAMPAGE_only	13	13	70	2.513550	5.505486	chr7	22561901	22562080	DNA|hAT-Charlie|MER5A	+	chr7	22563336	22573996	AC002480.1|ENST00000435127.1	+	22563336,22564965,22571774,22572084	22563430,22565152,22572013,22573996	0.614286
NCI_H460	chr16	66518000	66518027	66518026	-	High_confidence	7	7	16	0.574526	3.640224	chr16	66517998	66518159	LTR|ERVL|LTR91	-	chr16	66511683	66518142	TK2|ENST00000562552.5	-	66511683,66513730,66517135,66517788	66512066,66513811,66517215,66518142	0.937500
NCI_H460	chr6	106695423	106695435	106695428	+	High_confidence	4	4	9	0.323171	2.500000	chr6	106695360	106695850	LTR|ERVL-MaLR|MLT1G1	+	chr6	106695534	106699994	LINC02526|ENST00000424162.1	+	106695534,106696274,106699841	106695674,106696400,106699994	0.888889
NCI_H460	chr4	101033949	101033983	101033970	-	RAMPAGE_only	12	21	53	1.903117	4.647522	chr4	101033905	101034635	LINE|L2|L2a	+	chr4	101025317	101346842	PPP3CA|ENST00000507176.5	-	101025317,101029165,101032266,101040481,101061086,101063231,101080531,101083185,101093775,101098366,101099610,101108953,101346738	101026061,101029195,101032364,101040566,101061161,101063357,101080626,101083263,101093915,101098512,101099722,101109078,101346842	1.000000
NCI_H460	chr22	39320376	39320382	39320376	-	High_confidence	3	3	9	0.323171	2.750000	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.888889
NCI_H460	chr11	5505651	5505652	5505651	-	High_confidence	22	22	25	0.897697	3.233411	chr11	5505485	5505844	LTR|ERVL-MaLR|THE1B	-	chr11	5268344	5505652	HBE1|ENST00000292896.3	-	5268344,5269453,5269798,5505568	5268597,5269676,5270156,5505652	0.800000
NCI_H460	chr9	105299086	105299128	105299121	+	High_confidence	121	125	386	13.860434	6.659121	chr9	105298796	105299133	LINE|L2|L2b	-	chr9	105299119	105397346	MSTRG.23180.6	+	105299119,105309723,105335562,105348357,105356211,105358343,105361190,105362820,105364554,105365482,105366345,105374597,105383122,105385421,105389032	105299309,105309866,105335699,105348451,105356381,105358433,105362725,105363007,105364720,105365639,105366429,105374735,105383359,105385502,105397346	0.660622
NCI_H460	chr12	42442536	42442538	42442536	+	High_confidence	27	40	50	1.795393	5.012470	chr12	42442198	42442662	LTR|ERVK|LTR22E	+	chr12	42442648	42448623	PPHLN1|ENST00000624028.1	+	42442648	42448623	0.980000
NCI_H460	chr1	188888417	188888463	188888441	-	RAMPAGE_only	23	33	170	6.104336	6.083278	chr1	188888422	188889119	DNA|TcMar-Tigger|MER44D	+	chr1	188869476	188892591	MSTRG.2016.2	-	188869476	188892591	0.876471
NCI_H460	chr8	18010623	18010660	18010656	+	RAMPAGE_only	4	4	14	0.502710	3.235926	chr8	18010700	18010985	SINE|Alu|AluSg	+	chr8	18013827	18027758	PCM1|ENST00000519802.5	+	18013827,18014583,18025360,18025543,18027636	18014036,18014840,18025453,18025658,18027758	0.928571
NCI_H460	chr2	38515665	38515680	38515665	-	High_confidence	3	3	12	0.430894	2.913977	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.583333
NCI_H460	chr15	34588448	34588451	34588448	-	RAMPAGE_only	14	14	27	0.969512	4.384517	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34379067	34437466	GOLGA8A|NR_027409.1	-	34379067,34381700,34381967,34382150,34382385,34382796,34383440,34383745,34383960,34385047,34385253,34385426,34385739,34386624,34389643,34391122,34398633,34399154,34400711,34404916,34406673,34407523,34435382,34437397	34381613,34381856,34382068,34382251,34382529,34383053,34383528,34383853,34384047,34385157,34385338,34385474,34385778,34387952,34389768,34391426,34398729,34399203,34400759,34405055,34406870,34407735,34435471,34437466	0.555556
NCI_H460	chr5	140697946	140697976	140697975	+	High_confidence	3	3	13	0.466802	3.022055	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140698679	140704502	ZMAT2|ENST00000519913.6	+	140698679,140700818,140702005,140703917,140704425	140698831,140700912,140702129,140703991,140704502	0.769231
NCI_H460	chr3	9391827	9391828	9391827	-	High_confidence	10	11	13	0.466802	3.546594	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9389914	9391822	THUMPD3-AS1|ENST00000522221.1	-	9389914,9391426	9390497,9391822	0.615385
NCI_H460	chrX	103627089	103627090	103627089	+	RAMPAGE_only	7	7	7	0.251355	2.521641	chrX	103626903	103627134	SINE|MIR|MIR	-	chrX	103607970	103629690	TCEAL3|ENST00000477014.1	+	103607970,103608603,103610510,103625317,103627040,103628405,103629493	103608058,103608673,103610607,103625435,103627154,103628793,103629690	1.000000
NCI_H460	chr2	101405434	101405435	101405434	-	RAMPAGE_only	4	7	7	0.251355	2.807355	chr2	101405147	101405446	SINE|Alu|AluSq2	-	chr2	101397403	101474504	RFX8|ENST00000646893.1	-	101397403,101402435,101405942,101410618,101412914,101414853,101417533,101418850,101421723,101422361,101466776,101474201	101397724,101402752,101406057,101410713,101413071,101414912,101417684,101418964,101421777,101422472,101466900,101474504	1.000000
NCI_H460	chr21	33931135	33931147	33931144	+	High_confidence	3	4	12	0.430894	2.594907	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.666667
NCI_H460	chr6	148527053	148527079	148527078	+	RAMPAGE_only	17	18	35	1.256775	4.240157	chr6	148526867	148527135	SINE|Alu|AluY	-	chr6	148524412	148552048	SASH1|ENST00000622663.1	+	148524412,148527452,148532796,148533770,148534750,148540442,148543679,148546014,148548294,148551424	148525365,148527596,148532966,148533980,148534901,148540556,148544818,148546146,148549732,148552048	0.657143
NCI_H460	chr5	614549	614621	614549	+	RAMPAGE_only	16	16	59	2.118564	4.782464	chr5	614444	614587	SINE|Alu|AluY	-	chr5	612289	653553	CEP72|NM_018140.3	+	612289,618989,620068,624470,633768,635371,637516,639088,640407,644298,647804,652987	612443,619117,620261,624579,633947,635584,637818,639224,640604,644425,647916,653553	0.847458
NCI_H460	chr6	137792775	137792826	137792805	-	High_confidence	9	12	43	1.544038	4.563023	chr6	137792705	137792907	LTR?|LTR?|MamRep605	-	chr6	137730169	137792835	LINC02539|ENST00000645996.1	-	137730169,137784731,137792747	137730597,137784856,137792835	0.674419
NCI_H460	chr19	10577511	10577526	10577511	-	High_confidence	6	7	13	0.466802	2.751629	chr19	10577423	10577734	SINE|Alu|AluY	-	chr19	10572670	10577314	AP1M2|ENST00000587069.5	-	10572670,10574416,10574903,10577197	10572895,10574492,10575029,10577314	0.846154
NCI_H460	chr18	7046726	7046761	7046760	-	RAMPAGE_only	3	3	11	0.394986	3.277613	chr18	7046655	7046783	LINE|L1|L1M5	+	chr18	6941947	7043965	MSTRG.11290.4	-	6941947,6943179,6947162,6948402,6949100,6950781,6955352,6956605,6958476,6959340,6961585,6961944,6964661,6965287,6966146,6971856,6973056,6974902,6975936,6977726,6978195,6980520,6982496,6983098,6985236,6985526,6986136,6992560,6993640,6995356,6997741,6999444,6999910,7002263,7007138,7008487,7009238,7010199,7011299,7011994,7013814,7015721,7016490,7017277,7023163,7024379,7025978,7032065,7032983,7034478,7035986,7037577,7038809,7040075,7042144,7043226	6942239,6943402,6947296,6948556,6949259,6950971,6955465,6956765,6958662,6959492,6961759,6962059,6964803,6965432,6966297,6971981,6973207,6975036,6976080,6977881,6978378,6980637,6982590,6983234,6985400,6985643,6986347,6992720,6993752,6995446,6997884,6999638,6999997,7002385,7007276,7008608,7009366,7010385,7011479,7012138,7014051,7015858,7016671,7017384,7023375,7024466,7026106,7032176,7033095,7034690,7036088,7037751,7038950,7040236,7042250,7043965	0.818182
NCI_H460	chr2	27978248	27978251	27978248	+	RAMPAGE_only	10	11	18	0.646342	3.572469	chr2	27978041	27978454	LTR|ERVL-MaLR|MSTB	+	chr2	27894619	28025488	BABAM2|ENST00000604932.1	+	27894619,27929831,27987992,28025225	27894684,27929908,27988087,28025488	0.500000
NCI_H460	chr13	109272199	109272203	109272202	+	RAMPAGE_only	72	76	133	4.775746	5.631689	chr13	109271794	109272374	LTR|ERV1|LTR9	+	chr13	109269633	109273838	AL161431.1|ENST00000618966.1	+	109269633	109273838	0.939850
NCI_H460	chr6	24817705	24817706	24817705	-	RAMPAGE_only	12	12	12	0.430894	3.084963	chr6	24811657	24817706	LINE|L1|L1HS	-	chr6	24797372	24809798	AL512428.1|ENST00000562221.1	-	24797372,24806366,24809716	24797837,24806473,24809798	0.500000
NCI_H460	chr4	141333512	141333590	141333512	+	RAMPAGE_only	3	3	37	1.328591	3.993133	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141636595	141733987	IL15|NM_172175.2	+	141636595,141656185,141688821,141719377,141720468,141721058,141721923,141727939,141729846,141732737	141636748,141656307,141689035,141719476,141720566,141721177,141722008,141727984,141729984,141733987	0.540541
NCI_H460	chr21	18745263	18745312	18745289	-	RAMPAGE_only	8	8	42	1.508130	4.794236	chr21	18744738	18745477	LINE|L2|L2	+	chr21	18561614	18759804	MIR548XHG|ENST00000355189.7	-	18561614,18589526,18737923,18752747,18759773	18561691,18589620,18738025,18753116,18759804	0.523810
NCI_H460	chr9	114394412	114394413	114394412	-	High_confidence	6	6	9	0.323171	2.725481	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	1.000000
NCI_H460	chr2	181954491	181954526	181954491	+	High_confidence	7	7	29	1.041328	4.211261	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.931034
NCI_H460	chr19	282765	282794	282765	-	RAMPAGE_only	5	5	18	0.646342	3.337175	chr19	282643	282733	SINE|MIR|MIR1_Amn	-	chr19	281045	288537	PLPP2|ENST00000621795.1	-	281045,282133,282751	281537,282310,288537	0.944444
NCI_H460	chr8	143281655	143281690	143281686	-	High_confidence	77	94	348	12.495936	5.109355	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.755747
NCI_H460	chr4	122913316	122913318	122913317	-	High_confidence	20	28	38	1.364499	4.442845	chr4	122913129	122913485	LTR|ERVL-MaLR|MLT1A0	-	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	0.973684
NCI_H460	chr13	22040971	22040972	22040971	+	High_confidence	7	8	8	0.287263	3.000000	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.625000
NCI_H460	chr9	124872540	124872573	124872571	+	High_confidence	6	9	28	1.005420	4.351823	chr9	124872312	124872607	SINE|Alu|AluY	+	chr9	124872588	124877401	ARPC5L|ENST00000465124.1	+	124872588,124874974,124876877	124873764,124875151,124877401	1.000000
NCI_H460	chr6	53617080	53617122	53617121	-	High_confidence	3	5	9	0.323171	2.725481	chr6	53616804	53617217	LTR|ERVL-MaLR|MSTA	-	chr6	53561905	53617171	AL033397.1|ENST00000503985.5	-	53561905,53564749,53569422,53616885	53564420,53564889,53569605,53617171	0.888889
NCI_H460	chr14	85934665	85934677	85934676	+	RAMPAGE_only	4	4	8	0.287263	2.750000	chr14	85934517	85934812	LTR|ERV1|LTR12F	+	chr14	85983945	86129778	LINC02328|ENST00000553668.2	+	85983945,86070862,86127949,86128664,86129495	85984022,86070967,86128116,86128773,86129778	0.625000
NCI_H460	chr4	173369526	173369534	173369526	-	High_confidence	23	23	65	2.334011	4.771841	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.569231
NCI_H460	chr2	223051771	223051801	223051771	+	High_confidence	7	7	20	0.718157	4.142664	chr2	223051672	223051801	SINE|MIR|MIRc	-	chr2	223051813	223055637	KCNE4|ENST00000281830.3	+	223051813,223052807	223052274,223055637	0.900000
NCI_H460	chr1	83182543	83182594	83182566	-	High_confidence	7	8	53	1.903117	5.315824	chr1	83182174	83188201	LINE|L1|L1PA2	+	chr1	83019498	83182585	MSTRG.1041.2	-	83019498,83102901,83182169	83021428,83103004,83182585	0.830189
NCI_H460	chr6	43025288	43025292	43025291	+	High_confidence	8	8	19	0.682249	3.932138	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.894737
NCI_H460	chr12	119179290	119179297	119179296	+	High_confidence	5	6	15	0.538618	2.896292	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.933333
NCI_H460	chr11	123469400	123469409	123469402	+	RAMPAGE_only	19	23	39	1.400407	3.662015	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123480737	123594838	GRAMD1B|ENST00000633087.1	+	123480737,123577366,123584311,123594081,123594734	123480893,123577577,123584332,123594166,123594838	0.794872
NCI_H460	chr7	102973318	102973358	102973321	+	High_confidence	19	28	59	2.118564	4.508176	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973436	102978667	NFE4|ENST00000638942.1	+	102973436,102975890,102978380	102973771,102976230,102978667	0.813559
NCI_H460	chr7	134549109	134549114	134549109	+	RAMPAGE_only	15	15	30	1.077236	4.281728	chr7	134549070	134551552	LTR|ERV1|HERVS71-int	+	chr7	134564787	134570474	AKR1B15|ENST00000467156.1	+	134564787,134568157,134569412	134565546,134568325,134570474	0.633333
NCI_H460	chrUn_GL000195v1	68816	68820	68819	-	RAMPAGE_only	3	3	7	0.251355	2.521641	chrUn_GL000195v1	68610	68920	SINE|Alu|AluY	+	chrUn_GL000195v1	42937	86719	LOC389831|NM_001242480.1	-	42937,48954,74120,86517	44923,49119,74180,86719	0.571429
NCI_H460	chr7	102973485	102973503	102973491	+	High_confidence	65	65	261	9.371952	6.761034	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973521	102988856	NFE4|ENST00000420058.1	+	102973521,102978380,102988032,102988374	102973771,102978520,102988232,102988856	0.662835
NCI_H460	chr14	101723341	101723343	101723342	+	RAMPAGE_only	39	51	62	2.226287	5.140703	chr14	101723133	101723569	LTR|ERVL|MLT2A2	+	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.854839
NCI_H460	chr10	84279967	84279968	84279967	+	High_confidence	34	37	40	1.436314	4.431624	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279979	84294659	LINC00858|ENST00000415469.5	+	84279979,84288223,84288593,84288974,84291406,84293245	84280065,84288420,84288780,84289044,84292137,84294659	0.600000
NCI_H460	chr6	149895928	149895975	149895974	-	High_confidence	3	3	15	0.538618	3.456565	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.933333
NCI_H460	chr2	221501596	221501637	221501636	-	High_confidence	42	53	142	5.098916	5.236277	chr2	221501442	221501654	SINE|MIR|MIRb	-	chr2	221457888	221501636	MSTRG.14326.10	-	221457888,221482351,221501016,221501536	221457990,221482690,221501172,221501636	0.802817
NCI_H460	chr7	134432510	134432534	134432533	-	High_confidence	3	5	11	0.394986	2.646439	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.818182
NCI_H460	chr7	158863388	158863401	158863388	+	RAMPAGE_only	7	8	19	0.682249	3.787144	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.947368
NCI_H460	chr9	129488843	129488931	129488856	+	High_confidence	215	221	1168	41.940382	5.437733	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129513683	MSTRG.23405.3	+	129488911,129493418,129503322,129504891,129513418	129489299,129493595,129503672,129505043,129513683	0.979452
NCI_H460	chr6	28354137	28354153	28354137	-	High_confidence	16	16	56	2.010840	4.967720	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28326774	28354186	MSTRG.19695.11	-	28326774,28327382,28329302,28336789,28353861	28326854,28327533,28329778,28336943,28354186	0.803571
NCI_H460	chr4	141332616	141332617	141332616	-	High_confidence	20	20	29	1.041328	3.865765	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.965517
NCI_H460	chr14	73463608	73463630	73463624	-	High_confidence	100	109	340	12.208673	6.260682	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73460934	73463618	AC005280.2|ENST00000557577.1	-	73460934,73462528,73463474	73461264,73462689,73463618	0.682353
NCI_H460	chr18	54945516	54945517	54945516	-	RAMPAGE_only	11	11	13	0.466802	3.418296	chr18	54945305	54945474	SINE|MIR|MIRc	-	chr18	54901510	54942950	CCDC68|ENST00000432185.5	-	54901510,54907785,54917912,54919270,54928799,54934819,54936832,54937956,54940996,54942674	54904415,54907862,54917996,54919376,54928882,54934948,54936958,54938097,54941083,54942950	0.923077
NCI_H460	chr17	6853863	6853887	6853863	+	High_confidence	9	11	57	2.046748	5.052629	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853860	6902192	ALOX12P2|ENST00000574727.5	+	6853860,6854213,6892002,6894317,6894883,6895095,6895342,6896315,6896553,6898528,6898799,6899390,6899592,6899867	6854060,6854435,6892075,6894513,6895006,6895199,6895503,6896459,6896763,6898698,6898929,6899490,6899760,6902192	0.789474
NCI_H460	chr2	3536839	3536873	3536866	-	High_confidence	4	9	26	0.933604	4.133661	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.769231
NCI_H460	chr7	1569135	1569186	1569135	-	High_confidence	3	3	16	0.574526	3.024397	chr7	1568947	1569111	SINE|Alu|AluJr	-	chr7	1567329	1569993	PSMG3|ENST00000288607.2	-	1567329,1569123	1567850,1569993	0.937500
NCI_H460	chr6	31836489	31836515	31836500	+	High_confidence	3	3	10	0.359079	2.921928	chr6	31836272	31836535	SINE|Alu|AluJb	-	chr6	31836842	31839764	C6orf48|ENST00000395788.3	+	31836842,31839542	31837435,31839764	1.000000
NCI_H460	chr15	82546441	82546442	82546441	-	RAMPAGE_only	11	11	11	0.394986	3.095795	chr15	82546117	82546394	SINE|Alu|AluSx1	-	chr15	82536749	82540564	RPS17|ENST00000330244.11	-	82536749,82538305,82538879,82539980,82540425	82536881,82538371,82538985,82540132,82540564	1.000000
NCI_H460	chr8	75278812	75278833	75278812	-	High_confidence	3	4	11	0.394986	3.277613	chr8	75278367	75284402	LINE|L1|L1PA4	+	chr8	75223768	75278497	CASC9|ENST00000521147.1	-	75223768,75278356	75224358,75278497	0.636364
NCI_H460	chr10	115435385	115435418	115435387	+	High_confidence	39	70	152	5.457995	5.882066	chr10	115435292	115435573	LTR|ERVL-MaLR|MSTD	+	chr10	115435150	115948990	MSTRG.3297.10	+	115435150,115461940,115467173,115469171,115519262,115549457,115727247,115847876,115944657	115435483,115462035,115467252,115469329,115519324,115549536,115727355,115847991,115948990	0.940789
NCI_H460	chr5	167660367	167660381	167660380	-	High_confidence	13	13	41	1.472222	4.596483	chr5	167660180	167660492	SINE|Alu|AluYm1	+	chr5	167653227	167660481	AC008708.2|ENST00000522956.1	-	167653227,167660057	167653927,167660481	0.926829
NCI_H460	chr5	59093352	59093367	59093353	-	RAMPAGE_only	3	6	13	0.466802	3.238901	chr5	59092926	59093513	LINE|L1|HAL1	+	chr5	58974654	59039515	PDE4D|ENST00000515011.5	-	58974654,58975656,58976349,58977190,58988492,58989754,58990803,58991831,58993371,59038858	58975080,58975839,58976472,58977345,58988592,58989919,58990902,58992004,58993465,59039515	0.923077
NCI_H460	chr9	129489059	129489126	129489125	+	High_confidence	45	60	177	6.355691	6.390293	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.875706
NCI_H460	chr2	230342117	230342141	230342117	+	High_confidence	10	11	56	2.010840	4.746486	chr2	230337069	230342513	LINE|L1|L1HS	-	chr2	230342069	230372744	SP140L|ENST00000458341.1	+	230342069,230357804,230358963,230361613,230370907,230371597	230342173,230357967,230359132,230361697,230370967,230372744	0.500000
NCI_H460	chr4	81153878	81153893	81153892	-	High_confidence	3	4	10	0.359079	2.921928	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81087369	81153732	PRKG2|ENST00000545647.5	-	81087369,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153429,81153643	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153555,81153732	1.000000
NCI_H460	chr13	43053928	43053972	43053948	+	RAMPAGE_only	9	17	65	2.334011	4.446807	chr13	43052716	43054750	LINE|L1|L1PB1	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.953846
NCI_H460	chr16	21612241	21612262	21612261	+	High_confidence	4	4	9	0.323171	2.947703	chr16	21612297	21612508	SINE|MIR|MIRc	+	chr16	21612099	21625115	METTL9|ENST00000562961.1	+	21612099,21612644,21617864,21624930	21612298,21612835,21618074,21625115	0.888889
NCI_H460	chr15	80059918	80059933	80059918	+	High_confidence	192	224	762	27.361790	5.727389	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.967192
NCI_H460	chr10	34699091	34699141	34699091	-	RAMPAGE_only	2	2	12	0.430894	2.584963	chr10	34699079	34699154	DNA|TcMar-Tigger|Tigger20a	-	chr10	34312263	34815065	MSTRG.2695.12	-	34312263,34317106,34331116,34336198,34337274,34341626,34347964,34359146,34360070,34374873,34377966,34382539,34384128,34399329,34401825,34450316,34470084,34516978,34696317,34814875	34312382,34317338,34331344,34336243,34337426,34341816,34348115,34359317,34360259,34375002,34378106,34382922,34384254,34399413,34401917,34450448,34470263,34517159,34696419,34815065	0.583333
NCI_H460	chr4	73739792	73739794	73739793	-	RAMPAGE_only	4	7	11	0.394986	2.521928	chr4	73739611	73739969	LINE|L2|L2c	+	chr4	73665544	73721156	MSTRG.17563.1	-	73665544,73670749,73706336,73720983	73666539,73670903,73706575,73721156	0.909091
NCI_H460	chr7	93591304	93591383	93591304	+	High_confidence	24	26	237	8.510163	5.573578	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591287	93818515	MSTRG.21200.1	+	93591287,93807203	93591771,93818515	0.890295
NCI_H460	chr13	95740371	95740380	95740371	+	RAMPAGE_only	5	6	16	0.574526	3.773557	chr13	95733699	95740837	LINE|L1|L1PA2	-	chr13	95677157	95791843	DNAJC3|ENST00000376795.6	+	95677157,95709226,95723241,95725177,95760039,95760678,95763642,95763832,95785938,95787006,95790872	95677337,95709337,95723366,95725252,95760221,95760798,95763748,95763953,95786071,95787155,95791843	0.687500
NCI_H460	chr7	151472440	151472457	151472440	-	High_confidence	22	22	100	3.590786	5.253919	chr7	151472225	151472443	LINE|L2|L2a	+	chr7	151470298	151471803	RHEB|ENST00000470072.1	-	151470298,151471393	151470652,151471803	0.680000
NCI_H460	chr15	78720296	78720297	78720296	-	RAMPAGE_only	8	9	11	0.394986	2.721928	chr15	78719832	78725853	LINE|L1|L1PA3	+	chr15	78692577	78727754	CHRNB4|ENST00000558216.1	-	78692577,78707987,78727611	78692894,78708105,78727754	0.636364
NCI_H460	chr7	101308293	101308325	101308299	+	High_confidence	231	315	1323	47.506100	7.036142	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.961451
NCI_H460	chr10	103181328	103181329	103181328	-	High_confidence	164	165	172	6.176152	5.623495	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103169283	103181320	NT5C2|ENST00000467380.1	-	103169283,103174857,103181184	103169449,103174982,103181320	0.540698
NCI_H460	chr1	83182286	83182366	83182333	-	High_confidence	21	24	187	6.714770	6.432179	chr1	83182174	83188201	LINE|L1|L1PA2	+	chr1	83019498	83182585	MSTRG.1041.2	-	83019498,83102901,83182169	83021428,83103004,83182585	0.828877
NCI_H460	chr16	72627651	72627736	72627735	-	RAMPAGE_only	8	9	50	1.795393	4.969274	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.680000
NCI_H460	chr1	219091263	219091268	219091267	-	RAMPAGE_only	4	6	10	0.359079	2.947703	chr1	219088450	219094763	LINE|L1|L1MA4	+	chr1	219080972	219173788	LYPLAL1-AS1|NR_038845.1	-	219080972,219086494,219149938,219156119,219173469	219081943,219086660,219150031,219156199,219173788	0.600000
NCI_H460	chr18	63702374	63702375	63702374	+	High_confidence	13	13	15	0.538618	3.373557	chr18	63702310	63702603	SINE|Alu|AluSg	+	chr18	63702303	63723893	SERPINB11|NM_080475.3	+	63702303,63702850,63710178,63711334,63712564,63716034,63720012,63720830,63722994	63702377,63703006,63710361,63711394,63712693,63716152,63720155,63720986,63723893	0.933333
NCI_H460	chr6	24658942	24659029	24658942	-	High_confidence	28	30	121	4.344851	5.863915	chr6	24658846	24659355	LTR|ERV1|LTR26C	+	chr6	24654377	24659172	TDP2|ENST00000478285.1	-	24654377,24657811,24658560	24654530,24657903,24659172	0.909091
NCI_H460	chr15	53541006	53541048	53541016	-	High_confidence	49	60	223	8.007453	5.403846	chr15	53540633	53546677	LINE|L1|L1PA2	+	chr15	53515162	53541080	MSTRG.7909.6	-	53515162,53523217,53540661	53517754,53523322,53541080	0.995516
NCI_H460	chr1	188892069	188892083	188892069	-	High_confidence	201	214	615	22.083335	6.081398	chr1	188889533	188892095	LINE|L1|L1MA8	+	chr1	188869476	188892591	MSTRG.2016.2	-	188869476	188892591	0.991870
NCI_H460	chr2	107748269	107748292	107748269	-	High_confidence	50	56	266	9.551491	6.802144	chr2	107748198	107748521	SINE|Alu|AluY	-	chr2	107633623	107748260	MSTRG.13533.1	-	107633623,107650075,107650719,107748114	107636299,107650163,107650800,107748260	0.533835
NCI_H460	chr7	1533161	1533175	1533161	+	RAMPAGE_only	3	4	13	0.466802	2.625815	chr7	1533060	1533178	SINE|MIR|MIR3	-	chr7	1531161	1543043	MSTRG.20624.2	+	1531161,1539148,1539940	1538457,1539228,1543043	0.923077
NCI_H460	chr14	27673213	27673253	27673239	-	High_confidence	55	55	196	7.037941	6.251189	chr14	27673059	27679095	LINE|L1|L1PA3	+	chr14	27321921	27673221	AL390334.1|ENST00000556890.1	-	27321921,27656337,27673028	27322141,27656502,27673221	0.744898
NCI_H460	chr2	215383357	215383448	215383357	-	High_confidence	9	11	89	3.195800	5.575631	chr2	215383001	215383307	SINE|Alu|AluSz	-	chr2	215379204	215383483	FN1|ENST00000490833.5	-	215379204,215380810,215382002,215382211,215383327	215379317,215381080,215382048,215382325,215383483	0.561798
NCI_H460	chr4	74224286	74224289	74224286	+	RAMPAGE_only	9	9	20	0.718157	3.408695	chr4	74224092	74224549	LINE|L1|L1M7	-	chr4	74194039	74302598	MTHFD2L|ENST00000492183.5	+	74194039,74199793,74201262,74225301,74281424,74301696	74195838,74199946,74201370,74225394,74281550,74302598	0.800000
NCI_H460	chrX	68217292	68217316	68217302	-	RAMPAGE_only	11	11	57	2.046748	5.186732	chrX	68216915	68222939	LINE|L1|L1PA2	+	chrX	68192741	68210268	OPHN1|ENST00000467444.1	-	68192741,68193889,68194464,68197185,68201618,68206572,68210152	68192993,68193952,68194498,68197264,68201710,68206673,68210268	0.754386
NCI_H460	chr2	199955980	199956005	199956003	+	High_confidence	4	8	17	0.610434	3.155639	chr2	199955996	199956125	LINE|L1|L1MDb	+	chr2	199955820	200008540	MAIP1|ENST00000435773.2	+	199955820,199959267,199959753,200005742,200008465	199956248,199959339,199959880,200005777,200008540	0.705882
NCI_H460	chr17	83049155	83049169	83049168	-	High_confidence	6	6	16	0.574526	3.773557	chr17	83049003	83049282	SINE|Alu|AluY	+	chr17	82943790	83049166	B3GNTL1|ENST00000576599.5	-	82943790,82946878,82956694,82957180,82957358,82961056,82965650,83005114,83005574,83014453,83035034,83048470,83048668	82944049,82946983,82956769,82957249,82957494,82961181,82965746,83005210,83005671,83014519,83035099,83048570,83049166	0.812500
NCI_H460	chr21	29193399	29193460	29193459	+	High_confidence	190	203	364	13.070461	4.995412	chr21	29193019	29193674	LTR|ERV1|MER50B	+	chr21	29193493	29288205	LINC00189|NR_027072.2	+	29193493,29287983	29194260,29288205	0.967033
NCI_H460	chr1	152049863	152049893	152049886	-	RAMPAGE_only	3	4	15	0.538618	3.182006	chr1	152049394	152049912	DNA|PiggyBac|Looper	-	chr1	152032505	152047907	S100A11|ENST00000478109.1	-	152032505,152033647,152047821	152032823,152033800,152047907	0.733333
NCI_H460	chr13	30863476	30863498	30863497	+	RAMPAGE_only	3	4	14	0.502710	3.392747	chr13	30863143	30863642	LTR|ERVL|MER74A	+	chr13	30882550	30883395	LINC00545|ENST00000440633.1	+	30882550,30883093	30882659,30883395	0.571429
NCI_H460	chr20	8114434	8114531	8114499	+	High_confidence	30	30	322	11.562331	6.257469	chr20	8108866	8114917	LINE|L1|L1PA3	-	chr20	8114506	8658555	PLCB1|ENST00000630495.2	+	8114506,8141870,8150293,8371381,8628293,8646101,8647899,8649373,8657183,8658537	8114573,8141948,8150371,8371450,8628431,8646181,8647953,8649449,8657284,8658555	0.614907
NCI_H460	chr1	188890300	188890301	188890300	-	RAMPAGE_only	8	8	10	0.359079	3.321928	chr1	188889533	188892095	LINE|L1|L1MA8	+	chr1	188869481	188888540	AL691515.2|ENST00000650519.1	-	188869481,188871136,188888393	188869748,188871506,188888540	0.900000
NCI_H460	chr4	39515030	39515047	39515030	-	RAMPAGE_only	3	4	9	0.323171	2.947703	chr4	39514672	39514981	SINE|Alu|AluSx	-	chr4	39498787	39526557	UGDH|ENST00000506179.5	-	39498787,39503874,39504416,39505236,39505617,39508565,39509759,39510352,39510660,39514082,39521350,39526383	39500253,39503985,39504508,39505370,39505748,39508660,39509907,39510550,39510861,39514184,39521519,39526557	0.555556
NCI_H460	chr5	32403105	32403167	32403145	-	RAMPAGE_only	4	5	33	1.184959	3.861477	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.939394
NCI_H460	chr2	233448834	233448864	233448834	+	RAMPAGE_only	2	2	10	0.359079	2.646439	chr2	233448452	233449071	LTR|ERV1|MER51A	-	chr2	233438312	233472104	DGKD|ENST00000430834.1	+	233438312,233441886,233445622,233446711,233448086,233448275,233449102,233449981,233450921,233451963,233454356,233454762,233456898,233457220,233458283,233459756,233460193,233462347,233462642,233464163,233467085,233468422,233469370	233438379,233441995,233445762,233446796,233448181,233448375,233449376,233450131,233451050,233452060,233454464,233454873,233456995,233457328,233458397,233459891,233460345,233462459,233462735,233464283,233467203,233468553,233472104	0.800000
NCI_H460	chrX	23883670	23883698	23883673	-	High_confidence	4	5	25	0.897697	3.943465	chrX	23883103	23883918	LTR|ERV1|LTR1A1	+	chrX	23856355	23884019	APOO|ENST00000633372.1	-	23856355,23858641,23868592,23874402,23878914,23880844,23883358	23856382,23858733,23868688,23874457,23879034,23880952,23884019	1.000000
NCI_H460	chr10	6737341	6737423	6737341	+	High_confidence	13	14	102	3.662602	5.374402	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.970588
NCI_H460	chr9	39809997	39810076	39810033	-	High_confidence	259	262	720	25.853660	5.782479	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803664	39810063	MSTRG.22917.3	-	39803664,39809485,39809730	39803859,39809615,39810063	0.931944
NCI_H460	chrX	131579054	131579123	131579064	-	High_confidence	8	8	33	1.184959	4.354852	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.939394
NCI_H460	chr4	122945395	122945408	122945407	+	RAMPAGE_only	7	7	18	0.646342	3.947703	chr4	122939633	122945796	LINE|L1|L1PA4	-	chr4	122923100	123102293	SPATA5|ENST00000422835.2	+	122923100,122927633,122929039,122933438,122934096,122935713,122936099,122938125,122947232,122979231,123028185,123056386,123057208,123090578,123102183	122923305,122927758,122929197,122933497,122934738,122935843,122936156,122938249,122947488,122979386,123028395,123056440,123057288,123090705,123102293	0.833333
NCI_H460	chr5	75696144	75696165	75696144	-	High_confidence	5	6	12	0.430894	3.251629	chr5	75695698	75701728	LINE|L1|L1PA3	+	chr5	75692393	75696111	POC5|ENST00000357564.4	-	75692393,75694654,75696044	75692500,75694831,75696111	0.500000
NCI_H460	chr9	32997349	32997350	32997349	-	High_confidence	7	7	7	0.251355	2.521641	chr9	32997347	32997748	LINE|L2|L2c	-	chr9	32972762	32997360	APTX|ENST00000479656.5	-	32972762,32974457,32984630,32985970,32987543,32988078,32989758,32997242	32973652,32974561,32984857,32986030,32987842,32988124,32989895,32997360	1.000000
NCI_H460	chr16	66408530	66408564	66408538	+	High_confidence	8	8	34	1.220867	4.577820	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.823529
NCI_H460	chr18	7946867	7946898	7946878	+	High_confidence	65	67	271	9.731030	5.842208	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.863469
NCI_H460	chr1	188914844	188914849	188914844	+	RAMPAGE_only	22	22	65	2.334011	4.914767	chr1	188914662	188914961	SINE|Alu|AluSx4	+	chr1	188905687	189040157	MSTRG.2017.1	+	188905687,189036038,189036717	188953133,189036180,189040157	0.907692
NCI_H460	chr1	83182473	83182474	83182473	-	High_confidence	8	8	10	0.359079	2.921928	chr1	83182174	83188201	LINE|L1|L1PA2	+	chr1	83019498	83182585	MSTRG.1041.2	-	83019498,83102901,83182169	83021428,83103004,83182585	1.000000
NCI_H460	chr19	48868613	48868666	48868613	-	High_confidence	36	45	246	8.833334	6.687029	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.987805
NCI_H460	chr7	33351952	33351978	33351977	+	RAMPAGE_only	5	5	16	0.574526	3.323231	chr7	33351872	33352111	LTR|ERV1|LTR27B	-	chr7	33344606	33605626	BBS9|ENST00000434373.3	+	33344606,33349067,33351218,33352858,33357854,33367766,33383665,33387991,33505462,33533953,33604864	33344634,33349170,33351323,33352873,33357995,33367862,33383838,33388144,33505645,33534176,33605626	0.875000
NCI_H460	chr1	246689752	246689795	246689773	+	High_confidence	5	5	20	0.718157	3.826875	chr1	246689571	246689829	LTR|ERVL|LTR41	+	chr1	246690046	246691821	AL591848.2|ENST00000442712.1	+	246690046,246691467	246690214,246691821	0.950000
NCI_H460	chr7	106285332	106285352	106285335	-	High_confidence	3	3	10	0.359079	2.725481	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106248284	106285192	NAMPT|NM_005746.2	-	106248284,106253016,106254363,106261587,106263391,106268463,106269153,106272529,106274945,106277022,106284827	106251193,106253151,106254504,106261707,106263617,106268600,106269312,106272658,106275049,106277179,106285192	0.900000
NCI_H460	chr1	110381657	110381675	110381657	-	RAMPAGE_only	2	4	8	0.287263	3.000000	chr1	110381335	110381620	SINE|Alu|AluJb	-	chr1	110375035	110379183	SLC16A4|ENST00000467986.2	-	110375035,110376949,110378852	110375551,110377161,110379183	0.500000
NCI_H460	chr19	39485802	39485803	39485802	+	High_confidence	9	9	9	0.323171	2.947703	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	1.000000
NCI_H460	chr2	227888605	227888620	227888605	+	High_confidence	3	3	8	0.287263	3.000000	chr2	227888311	227888642	LTR|ERVL|ERV3-16A3_LTR	-	chr2	227888438	227924341	MSTRG.14358.5	+	227888438,227889275,227889855,227891254,227893794,227898181,227903001,227904928,227906235,227907137,227918779,227921398,227923933	227888683,227889573,227890000,227891313,227893917,227898281,227903109,227905035,227906338,227907252,227918856,227921561,227924341	0.875000
NCI_H460	chr2	201402882	201402883	201402882	-	RAMPAGE_only	7	7	11	0.394986	2.721928	chr2	201402818	201402918	DNA|hAT-Charlie|MER5B	-	chr2	201395127	201451500	TRAK2|ENST00000430254.1	-	201395127,201397501,201398144,201399376,201401017,201407402,201420416,201451349	201395444,201397580,201398354,201399493,201401094,201407597,201420706,201451500	0.636364
NCI_H460	chr3	9986881	9986905	9986898	+	High_confidence	16	17	85	3.052168	5.175879	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.541176
NCI_H460	chr7	2242922	2242923	2242922	+	High_confidence	106	106	106	3.806233	5.833638	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
NCI_H460	chr6	24659078	24659116	24659078	-	High_confidence	7	8	19	0.682249	3.826875	chr6	24658846	24659355	LTR|ERV1|LTR26C	+	chr6	24654377	24659172	TDP2|ENST00000478285.1	-	24654377,24657811,24658560	24654530,24657903,24659172	0.894737
NCI_H460	chr15	53540733	53540775	53540743	-	High_confidence	99	99	326	11.705963	5.319457	chr15	53540633	53546677	LINE|L1|L1PA2	+	chr15	53513740	53540852	WDR72|NR_102336.1	-	53513740,53523217,53540661	53517754,53523322,53540852	0.960123
NCI_H460	chr1	176241600	176241653	176241652	+	High_confidence	21	21	140	5.027101	6.295923	chr1	176241083	176241796	DNA|TcMar-Tigger|MER44D	-	chr1	176241601	176555711	MSTRG.1929.1	+	176241601,176265052,176348395,176555406	176241743,176265118,176348734,176555711	0.600000
NCI_H460	chr16	57174286	57174287	57174286	-	High_confidence	9	10	10	0.359079	2.947703	chr16	57174013	57174307	SINE|Alu|AluSg	+	chr16	57153736	57173881	FAM192A|ENST00000389447.9	-	57153736,57154134,57164000,57167092,57172250,57172775,57173727	57153806,57154507,57164065,57167226,57172372,57172874,57173881	0.900000
NCI_H460	chr3	120378642	120378643	120378642	-	RAMPAGE_only	9	9	11	0.394986	3.095795	chr3	120372615	120378640	LINE|L1|L1PA2	-	chr3	120365992	120368326	AC063952.4|ENST00000634744.1	-	120365992,120366395,120367877	120366220,120366543,120368326	0.727273
NCI_H460	chr7	867960	867988	867986	+	High_confidence	14	22	37	1.328591	3.813462	chr7	867956	868098	LTR|ERVL|LTR41	-	chr7	867903	874902	MSTRG.20621.36	+	867903,869348,872469,873214	868114,869516,872562,874902	0.945946
NCI_H460	chr7	151472109	151472112	151472111	-	RAMPAGE_only	11	21	21	0.754065	3.784942	chr7	151472095	151472225	DNA|hAT-Blackjack|MER63B	+	chr7	151466873	151519183	RHEB|ENST00000472642.5	-	151466873,151470570,151471393,151471548,151477332,151484736,151490942,151519031	151467211,151470652,151471441,151471605,151477415,151484804,151491014,151519183	0.904762
NCI_H460	chr1	68881349	68881430	68881419	+	High_confidence	9	9	44	1.579946	4.268378	chr1	68875777	68881805	LINE|L1|L1PA2	-	chr1	68881576	68943452	AL033530.1|ENST00000646995.1	+	68881576,68942580	68882003,68943452	0.954545
NCI_H460	chr19	17336685	17336686	17336685	+	High_confidence	9	9	12	0.430894	2.913977	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.666667
NCI_H460	chr19	46180850	46180879	46180862	-	High_confidence	2500	2577	8873	318.610452	5.231018	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46173420	46180879	MSTRG.12492.3	-	46173420,46173933,46179485,46180604,46180800	46173520,46174052,46179537,46180689,46180879	0.936549
NCI_H460	chr3	139344535	139344551	139344547	+	High_confidence	206	223	761	27.325882	6.020557	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.915900
NCI_H460	chr14	19289871	19289875	19289874	-	RAMPAGE_only	11	13	24	0.861789	4.251629	chr14	19289707	19290351	DNA|TcMar-Tigger|MER44C	+	chr14	19244903	19269380	AL589743.7|ENST00000649331.1	-	19244903,19245664,19263182,19269148	19244980,19245863,19263321,19269380	0.708333
NCI_H460	chr10	26675751	26675777	26675776	-	High_confidence	11	20	35	1.256775	4.557854	chr10	26675712	26675886	SINE|Alu|AluYc	+	chr10	26664205	26676159	SELENOOLP|ENST00000446557.1	-	26664205,26668406,26676115	26664392,26668494,26676159	0.542857
NCI_H460	chr3	84192938	84192967	84192962	-	High_confidence	19	19	66	2.369919	3.768264	chr3	84188584	84193036	LTR|ERV1|HERVH-int	-	chr3	84184559	84193172	MSTRG.16493.1	-	84184559,84192890	84187239,84193172	0.909091
NCI_H460	chr3	149809514	149809536	149809535	+	RAMPAGE_only	3	4	10	0.359079	2.521928	chr3	149809289	149809585	SINE|Alu|AluYm1	+	chr3	149812687	149962139	RNF13|NM_183381.2	+	149812687,149846010,149852515,149872028,149895472,149902071,149911977,149921133,149960055,149960739	149813353,149846140,149852596,149872154,149895560,149902162,149912083,149921227,149960136,149962139	1.000000
NCI_H460	chr1	176241716	176241726	176241725	+	High_confidence	27	28	41	1.472222	5.046457	chr1	176241083	176241796	DNA|TcMar-Tigger|MER44D	-	chr1	176241601	176555711	MSTRG.1929.1	+	176241601,176265052,176348395,176555406	176241743,176265118,176348734,176555711	0.634146
NCI_H460	chr7	101217578	101217599	101217578	-	High_confidence	36	39	129	4.632114	5.627841	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.968992
NCI_H460	chr19	53865424	53865431	53865424	+	High_confidence	7	7	13	0.466802	3.026987	chr19	53865313	53865624	SINE|Alu|AluSx	-	chr19	53865348	53874256	MSTRG.12655.3	+	53865348,53869753,53873527	53865728,53869838,53874256	1.000000
NCI_H460	chr7	1571015	1571077	1571015	-	High_confidence	21	26	86	3.088076	5.523037	chr7	1570731	1571033	SINE|Alu|AluSx	-	chr7	1567612	1571005	PSMG3|ENST00000252329.3	-	1567612,1569123,1570473	1567850,1569360,1571005	0.953488
NCI_H460	chr21	26405915	26405969	26405942	+	RAMPAGE_only	49	58	163	5.852981	6.447469	chr21	26405595	26406023	LTR|ERVL|LTR16	+	chr21	26416508	26471198	AP001596.1|ENST00000444306.1	+	26416508,26470750	26416661,26471198	0.533742
NCI_H460	chr8	106060475	106060539	106060475	-	High_confidence	68	69	310	11.131437	6.804246	chr8	106060473	106060807	LTR|ERVL|LTR18A	+	chr8	105784804	106060477	ZFPM2-AS1|ENST00000524045.6	-	105784804,105787066,105787448,105798324,106059080,106060380	105785217,105787221,105787596,105798442,106059136,106060477	0.545161
NCI_H460	chr10	69232571	69232593	69232587	+	RAMPAGE_only	17	22	82	2.944445	5.162003	chr10	69232519	69232745	SINE|MIR|MIRb	+	chr10	69220302	69267559	HKDC1|ENST00000354624.5	+	69220302,69227206,69232763,69233013,69239041,69240651,69243181,69246078,69247359,69248423,69250289,69250532,69257035,69257326,69258775,69261138,69265584,69266609	69220498,69227369,69232912,69233133,69239137,69240751,69243365,69246234,69247593,69248728,69250435,69250652,69257131,69257426,69258959,69261294,69265818,69267559	0.963415
NCI_H460	chr2	227888491	227888546	227888543	+	High_confidence	466	505	3437	123.415319	7.489952	chr2	227888311	227888642	LTR|ERVL|ERV3-16A3_LTR	-	chr2	227888469	227903086	MSTRG.14358.6	+	227888469,227889855,227891254,227893794,227898181,227903001	227888683,227890000,227891313,227893917,227898281,227903086	0.668315
NCI_H460	chr4	110411228	110411304	110411303	+	RAMPAGE_only	3	3	27	0.969512	4.286790	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110365732	110506258	ENPEP|ENST00000510961.1	+	110365732,110488540,110491032,110500028,110506182	110365804,110488682,110491164,110500163,110506258	0.555556
NCI_H460	chr18	73264469	73264502	73264501	-	High_confidence	49	49	215	7.720190	6.509328	chr18	73264307	73264608	SINE|Alu|AluY	+	chr18	73154057	73264498	LOC400655|NR_034133.1	-	73154057,73159540,73161823,73200652,73255812,73264239	73155935,73159664,73161973,73200789,73255918,73264498	0.813953
NCI_H460	chr9	128185577	128185578	128185577	-	RAMPAGE_only	11	11	13	0.466802	2.918296	chr9	128185400	128185541	SINE|MIR|MIR3	-	chr9	128166151	128190710	CIZ1|ENST00000415526.5	-	128166151,128166758,128167094,128169051,128169405,128170019,128176350,128177565,128178368,128178708,128180414,128180720,128185546,128190328,128190687	128166406,128166880,128167164,128169201,128169519,128170107,128176475,128177763,128178490,128179415,128180523,128180799,128185776,128190444,128190710	0.923077
NCI_H460	chr21	18745075	18745095	18745094	-	RAMPAGE_only	40	40	65	2.334011	5.095714	chr21	18744738	18745477	LINE|L2|L2	+	chr21	18561264	18759812	MIR548XHG|NR_109925.1	-	18561264,18589526,18737923,18759773	18561691,18589620,18738025,18759812	0.707692
NCI_H460	chr3	9987139	9987153	9987139	+	High_confidence	4	4	14	0.502710	3.378783	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9987214	10003097	EMC3-AS1|ENST00000440568.1	+	9987214,9987814,9988711,10002716	9987264,9987905,9988747,10003097	0.714286
NCI_H460	chr20	54208557	54208558	54208557	+	High_confidence	6	7	7	0.251355	2.584963	chr20	54208550	54208675	SINE|MIR|MIR3	-	chr20	54208311	54219203	PFDN4|ENST00000487129.1	+	54208311,54208834,54214350,54215299,54219018	54208558,54208915,54214458,54215440,54219203	0.714286
NCI_H460	chr10	132331633	132331639	132331633	-	High_confidence	7	7	22	0.789973	3.684184	chr10	132331498	132331624	LTR|ERVL|LTR16E1	-	chr10	132330280	132331837	STK32C|ENST00000456004.1	-	132330280,132331435	132330485,132331837	0.772727
NCI_H460	chr14	77710857	77710878	77710872	+	High_confidence	4	4	21	0.754065	2.544531	chr14	77710914	77711213	LINE|L1|L1MA1	+	chr14	77710643	77717584	SLIRP|ENST00000556956.1	+	77710643,77715771,77717495	77710896,77715879,77717584	0.904762
NCI_H460	chr2	227884639	227884679	227884639	+	RAMPAGE_only	5	6	35	1.256775	4.354852	chr2	227884034	227884651	LINE|L1|L1MDb	-	chr2	227888438	227924341	MSTRG.14358.5	+	227888438,227889275,227889855,227891254,227893794,227898181,227903001,227904928,227906235,227907137,227918779,227921398,227923933	227888683,227889573,227890000,227891313,227893917,227898281,227903109,227905035,227906338,227907252,227918856,227921561,227924341	0.828571
NCI_H460	chr10	84142678	84142738	84142737	+	RAMPAGE_only	5	5	39	1.400407	4.574054	chr10	84142771	84142861	DNA|hAT-Charlie|Charlie4z	+	chr10	84139439	84153245	GHITM|ENST00000372134.5	+	84139439,84141461,84142654,84143994,84144874,84148729,84150054,84150708,84152263	84139593,84141629,84142754,84144106,84145016,84148838,84150243,84150880,84153245	0.923077
NCI_H460	chr8	29770331	29770333	29770332	-	RAMPAGE_only	16	21	25	0.897697	3.918296	chr8	29770197	29770431	SINE|MIR|MIRb	+	chr8	29721253	29748109	LINC00589|ENST00000506121.3	-	29721253,29724876,29726155,29748014	29722151,29725019,29726423,29748109	0.760000
NCI_H460	chr3	123508921	123508932	123508931	-	RAMPAGE_only	8	9	20	0.718157	3.576618	chr3	123508744	123509100	LTR|ERVL-MaLR|MLT1A	-	chr3	123494515	123585077	HACD2|NM_198402.3	-	123494515,123500514,123502559,123528385,123567761,123582211,123584872	123494970,123500693,123502681,123528474,123567780,123582329,123585077	0.850000
NCI_H460	chr5	84294218	84294219	84294218	-	RAMPAGE_only	11	11	16	0.574526	3.773557	chr5	84294101	84294410	SINE|Alu|AluY	+	chr5	83940599	84384386	EDIL3|ENST00000380138.3	-	83940599,83963204,84060299,84064699,84066450,84106648,84137240,84180392,84254083,84384307	83943568,83963360,84060484,84064844,84066606,84106830,84137354,84180521,84254212,84384386	0.812500
NCI_H460	chr3	134485462	134485496	134485462	-	High_confidence	3	3	25	0.897697	4.136842	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.920000
NCI_H460	chr2	71417037	71417076	71417037	+	RAMPAGE_only	9	9	33	1.184959	4.510769	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.969697
NCI_H460	chr1	166850038	166850047	166850038	+	RAMPAGE_only	2	3	8	0.287263	2.521641	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.875000
NCI_H460	chrX	119441030	119441109	119441108	+	RAMPAGE_only	9	13	88	3.159892	4.597329	chrX	119435468	119441493	LINE|L1|L1HS	-	chrX	119399408	119453182	SLC25A43|ENST00000493093.5	+	119399408,119410189,119452008,119452864	119399678,119410362,119452143,119453182	0.715909
NCI_H460	chr7	106285423	106285446	106285426	-	High_confidence	4	4	13	0.466802	2.688722	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106277055	106285612	NAMPT|ENST00000417537.1	-	106277055,106284827,106285540	106277179,106284931,106285612	0.923077
NCI_H460	chr5	9265500	9265549	9265504	-	High_confidence	4	6	22	0.789973	3.663533	chr5	9265168	9265679	LTR|ERVL|LTR53	+	chr5	9202123	9265545	SEMA5A|ENST00000514923.4	-	9202123,9224673,9226868,9237827,9265433	9202240,9224887,9226967,9237890,9265545	0.636364
NCI_H460	chr2	73736756	73736757	73736756	-	High_confidence	15	15	16	0.574526	3.640224	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73729889	73737335	MSTRG.13317.5	-	73729889,73730559,73732162,73734428,73737301	73730029,73730736,73732285,73734588,73737335	0.937500
neural_cell	chr19	47427359	47427399	47427385	-	RAMPAGE_only	27	37	121	2.245498	4.791805	chr19	47427348	47427570	LTR|ERVL|LTR33	+	chr19	47403117	47419528	MEIS3|NM_001009813.2	-	47403117,47406459,47406887,47407078,47407351,47409098,47409435,47414716,47415050,47416651,47416803,47417177,47419069	47403553,47406526,47406971,47407137,47407428,47409247,47409547,47414815,47415101,47416702,47416963,47417350,47419528	0.834711
neural_cell	chr19	3062818	3062983	3062922	-	High_confidence	44	56	259	4.806478	6.044602	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.980695
neural_cell	chr15	82749683	82749703	82749702	+	RAMPAGE_only	14	14	24	0.445388	4.175736	chr15	82749521	82749958	LTR|ERVL-MaLR|MLT1C	+	chr15	82744222	82750289	AC105339.3|ENST00000558342.1	+	82744222,82749295	82744319,82750289	0.875000
neural_cell	chr6	43013375	43013393	43013392	-	High_confidence	31	31	46	0.853660	4.772641	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.978261
neural_cell	chr11	36286849	36286850	36286849	-	RAMPAGE_only	24	25	26	0.482504	3.970176	chr11	36286616	36286962	LINE|L1|L1MD1	+	chr11	36274472	36289424	MSTRG.3264.6	-	36274472,36276136,36277088,36278476,36280711,36286820,36289361	36274772,36276240,36277123,36278616,36280837,36286845,36289424	0.846154
neural_cell	chr3	9391827	9391828	9391827	-	High_confidence	12	13	18	0.334041	3.503258	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9389914	9391822	THUMPD3-AS1|ENST00000522221.1	-	9389914,9391426	9390497,9391822	0.944444
neural_cell	chr5	139364616	139364648	139364616	+	RAMPAGE_only	3	4	15	0.278367	3.664498	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.733333
neural_cell	chr1	1655376	1655449	1655448	-	RAMPAGE_only	17	18	79	1.466069	5.761891	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.518987
neural_cell	chr10	75783530	75783556	75783555	+	High_confidence	4	5	10	0.185578	2.947703	chr10	75783550	75783799	SINE|MIR|MIRb	+	chr10	75782760	76557375	C10orf11|NM_032024.4	+	75782760,76036007,76047163,76058665,76324400,76557208	75783022,76036134,76047303,76058783,76324485,76557375	0.500000
neural_cell	chr8	140331814	140331833	140331823	-	RAMPAGE_only	9	9	28	0.519619	3.454701	chr8	140331642	140332615	LINE|L1|L1MA5	+	chr8	140283986	140302835	TRAPPC9|ENST00000521167.1	-	140283986,140287607,140290992,140300468,140302684	140284021,140287734,140291078,140300614,140302835	0.892857
neural_cell	chr22	50756881	50756950	50756949	+	High_confidence	19	19	70	1.299048	5.071624	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.628571
neural_cell	chr2	199955973	199956000	199955980	+	High_confidence	3	3	24	0.445388	3.827910	chr2	199955996	199956125	LINE|L1|L1MDb	+	chr2	199955820	200008540	MAIP1|ENST00000435773.2	+	199955820,199959267,199959753,200005742,200008465	199956248,199959339,199959880,200005777,200008540	0.916667
neural_cell	chr5	160171876	160171890	160171889	+	RAMPAGE_only	24	27	48	0.890776	4.863464	chr5	160171780	160172149	LINE|L1|L1ME4b	+	chr5	160187366	160238735	FABP6|ENST00000393980.8	+	160187366,160199048,160213735,160229545,160232097,160234819,160238605	160187454,160199157,160213819,160229624,160232273,160234909,160238735	0.708333
neural_cell	chr17	47067421	47067432	47067422	-	High_confidence	4	6	13	0.241252	3.022055	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.923077
neural_cell	chr19	48474947	48474948	48474947	+	RAMPAGE_only	6	9	9	0.167020	2.725481	chr19	48474982	48475109	SINE|MIR|MIRc	+	chr19	48469432	48480653	CYTH2|ENST00000641098.1	+	48469432,48470352,48470602,48472324,48473297,48473904,48474181,48474837,48477716,48478068,48478274,48478437,48479122	48469526,48470500,48470669,48472443,48473378,48474017,48474330,48474949,48477719,48478145,48478346,48478592,48480653	1.000000
neural_cell	chr2	179581697	179581712	179581697	-	RAMPAGE_only	6	7	16	0.296925	3.640224	chr2	179581672	179581853	LTR|ERVL-MaLR|MLT1J	+	chr2	179483319	179584067	ZNF385B|ENST00000439340.1	-	179483319,179518527,179522881,179544826,179583974	179483434,179518638,179522920,179544969,179584067	0.812500
neural_cell	chr19	16075920	16075941	16075924	+	High_confidence	4	6	15	0.278367	3.378783	chr19	16075891	16075946	SINE|MIR|MIR	-	chr19	16076072	16102969	TPM4|ENST00000642789.1	+	16076072,16081912,16086422,16088026,16089044,16093039,16093535,16093683,16101263	16076172,16082046,16086540,16088097,16089120,16093132,16093598,16093753,16102969	0.933333
neural_cell	chr14	81192598	81192623	81192598	-	RAMPAGE_only	3	3	11	0.204136	3.121928	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.909091
neural_cell	chr7	113144996	113145001	113144996	+	High_confidence	14	17	42	0.779429	4.753056	chr7	113144958	113145147	LINE|RTE-BovB|MamRTE1	+	chr7	113145015	113146330	AC073346.1|ENST00000430610.1	+	113145015,113145665,113146039	113145158,113145775,113146330	0.619048
neural_cell	chr2	237891243	237891284	237891251	+	RAMPAGE_only	8	10	32	0.593851	4.027518	chr2	237891135	237891449	SINE|Alu|AluY	-	chr2	237859975	237912010	RAMP1|ENST00000403885.1	+	237859975,237877223,237911527	237860003,237877362,237912010	0.562500
neural_cell	chr19	41982010	41982047	41982046	-	RAMPAGE_only	4	4	24	0.445388	3.050766	chr19	41982026	41982072	LINE|CR1|L3	-	chr19	41966581	41993467	ATP1A3|NM_001256213.1	-	41966581,41967248,41967661,41968784,41969434,41970184,41970387,41975628,41976415,41977935,41978150,41978605,41981501,41981721,41981907,41984917,41985305,41985863,41986115,41987935,41988317,41988475,41993392	41966965,41967340,41967763,41968915,41969580,41970308,41970542,41975797,41976566,41978072,41978326,41978798,41981636,41981831,41982106,41985186,41985423,41985998,41986229,41988139,41988377,41988562,41993467	0.958333
neural_cell	chr9	37800348	37800368	37800356	+	High_confidence	3	3	10	0.185578	2.947703	chr9	37800133	37800428	SINE|Alu|AluSg7	+	chr9	37800501	37863325	DCAF10|ENST00000377724.7	+	37800501,37819287,37842088,37854779,37857240,37860047,37861139	37801405,37819401,37842286,37854982,37857351,37860193,37863325	0.900000
neural_cell	chr11	123061296	123061322	123061296	-	High_confidence	6	6	28	0.519619	3.690260	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.928571
neural_cell	chr8	34165662	34165669	34165668	+	RAMPAGE_only	7	7	12	0.222694	2.918296	chr8	34165401	34165679	LINE|L2|L2a	-	chr8	34174885	34184895	AC087855.2|ENST00000518217.1	+	34174885,34184486	34175013,34184895	0.666667
neural_cell	chr3	139344535	139344548	139344547	+	High_confidence	184	184	592	10.986236	6.255088	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.805743
neural_cell	chr3	33864080	33864082	33864081	+	RAMPAGE_only	7	10	13	0.241252	3.188722	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.923077
neural_cell	chrX	55727305	55727375	55727374	+	RAMPAGE_only	3	3	13	0.241252	3.085055	chrX	55727344	55727437	LINE|L2|L2b	-	chrX	55731400	55751623	RRAGB|ENST00000474757.1	+	55731400,55751100	55731586,55751623	0.846154
neural_cell	chr7	130515296	130515531	130515530	+	RAMPAGE_only	82	83	634	11.765665	6.646470	chr7	130515533	130515567	DNA|hAT-Charlie|MER5A	+	chr7	130513359	130531047	MSTRG.19511.1	+	130513359,130528150	130524731,130531047	0.995268
neural_cell	chrX	47658599	47658630	47658623	-	High_confidence	15	15	55	1.020681	3.236630	chrX	47658369	47658606	SINE|MIR|MIR	-	chrX	47651800	47659107	UXT|ENST00000485641.5	-	47651800,47652080,47657182,47657781,47658829	47651895,47652144,47657290,47657863,47659107	0.854545
neural_cell	chr9	62897430	62897441	62897430	+	High_confidence	15	15	27	0.501061	4.606739	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.629630
neural_cell	chr22	44623784	44623789	44623788	-	RAMPAGE_only	4	4	9	0.167020	3.000000	chr22	44623678	44623742	LINE|L2|L2b	-	chr22	44606327	44625419	LINC00229|NR_044991.1	-	44606327,44606930,44622286,44622606,44625316	44606645,44607048,44622456,44622723,44625419	0.888889
neural_cell	chr4	59075222	59075246	59075245	-	High_confidence	25	25	109	2.022804	3.917251	chr4	59074899	59076513	DNA|TcMar-Tigger|Tigger2	-	chr4	59047019	59075256	AC097501.2|ENST00000502668.2	-	59047019,59047948,59075179	59047060,59048135,59075256	0.844037
neural_cell	chr2	241964283	241964353	241964330	+	RAMPAGE_only	15	21	150	2.783675	5.104634	chr2	241964013	241964445	LTR|ERV1|MER83	-	chr2	241933835	241966120	LINC01237|ENST00000439601.1	+	241933835,241965926	241934210,241966120	0.833333
neural_cell	chr6	87397972	87397973	87397972	+	High_confidence	15	16	20	0.371157	3.546439	chr6	87397978	87398323	LTR|ERVL|LTR18C	+	chr6	87397123	87399741	LINC01590|NR_026784.1	+	87397123,87399437	87398377,87399741	0.950000
neural_cell	chr13	33818346	33818380	33818379	+	High_confidence	10	14	60	1.113470	5.000624	chr13	33818361	33818761	LINE|L2|L2a	-	chr13	33818068	33837507	RFC3|NM_002915.3	+	33818068,33821131,33823916,33825788,33829835,33830718,33831255,33835147,33836103	33818265,33821269,33823984,33825886,33830017,33830855,33831354,33835217,33837507	0.800000
neural_cell	chr3	151020576	151020677	151020576	+	High_confidence	475	539	2464	45.726498	6.306141	chr3	151020352	151020758	LINE|L1|L1MEj	-	chr3	151020577	151080723	MSTRG.15278.3	+	151020577,151062642,151065012,151066309,151078888	151021095,151063003,151065076,151066429,151080723	0.972403
neural_cell	chr2	185424925	185424972	185424925	+	High_confidence	8	10	44	0.816545	5.036616	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185424796	185766549	MSTRG.12705.1	+	185424796,185434096,185483033,185739345,185743132,185744321,185745428,185746668,185747312,185753721,185760987,185761971,185763182,185764501	185425507,185434191,185483091,185739471,185743294,185744411,185745568,185746810,185747423,185753848,185761103,185762017,185763289,185766549	0.931818
neural_cell	chr16	57641682	57641699	57641682	+	High_confidence	10	10	19	0.352599	4.037401	chr16	57641565	57641864	SINE|Alu|AluSz6	-	chr16	57640964	57651468	ADGRG1|ENST00000563414.5	+	57640964,57641590,57650252,57651199	57641064,57641708,57650351,57651468	0.789474
neural_cell	chr3	151385032	151385039	151385038	+	RAMPAGE_only	3	3	6	0.111347	2.584963	chr3	151385006	151385070	LTR|ERV1|ERV24B_Prim-int	-	chr3	151086893	151433742	MED12L|ENST00000273432.8	+	151086893,151116337,151122782,151127824,151156160,151158688,151165419,151165845,151185329,151188353,151190716,151193489,151350058,151355120,151355895,151357212,151360473,151364978,151365849,151367645,151368149,151369435,151372566,151376025,151376799,151376990,151378011,151380112,151382655,151383778,151384082,151385029,151387809,151389978,151394655,151430298,151432751	151087025,151116442,151122974,151127984,151156330,151158799,151165519,151165982,151185461,151188480,151190931,151193666,151350206,151355239,151356039,151357376,151360605,151365206,151365991,151367766,151368251,151369549,151372766,151376214,151376874,151377178,151378173,151380224,151382745,151383888,151384218,151385191,151388172,151390135,151394867,151430380,151433742	1.000000
neural_cell	chr19	49086539	49086547	49086546	+	High_confidence	3	3	7	0.129905	2.584963	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.571429
neural_cell	chr7	30585428	30585434	30585428	-	High_confidence	2	2	7	0.129905	2.584963	chr7	30585198	30585502	SINE|Alu|AluSx	+	chr7	30577511	30585972	GARS-DT|ENST00000454922.6	-	30577511,30579230,30584710,30585329	30578091,30579314,30584808,30585972	0.714286
neural_cell	chr14	30191511	30191537	30191536	-	High_confidence	17	18	52	0.965007	4.066442	chr14	30191268	30191871	LTR|Gypsy?|LTR85a	-	chr14	29663811	30191898	PRKD1|ENST00000549503.1	-	29663811,29666076,29725535,30047709,30191298,30191865	29663859,29666208,29725674,30047787,30191450,30191898	0.596154
neural_cell	chr1	73674697	73674737	73674697	+	RAMPAGE_only	2	2	14	0.259810	3.664498	chr1	73674683	73674796	LINE|L2|L2a	+	chr1	73635215	73709581	LINC02238|ENST00000424953.1	+	73635215,73699750,73709143	73635241,73699843,73709581	0.714286
neural_cell	chr6	28335884	28335921	28335904	-	High_confidence	9	9	52	0.965007	5.185923	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.692308
neural_cell	chr1	151455105	151455106	151455105	-	High_confidence	4	5	6	0.111347	2.584963	chr1	151454831	151455120	SINE|Alu|AluSg	+	chr1	151430671	151455057	POGZ|ENST00000533461.5	-	151430671,151440927,151442080,151454961	151430841,151441086,151442205,151455057	0.833333
neural_cell	chr1	45600410	45600417	45600416	+	RAMPAGE_only	6	6	10	0.185578	3.321928	chr1	45600220	45601560	LINE|L1|L1ME1	-	chr1	45584064	45618244	MSTRG.643.18	+	45584064,45591222,45600384,45602254,45604935,45606481,45614095,45614292,45615012,45615304,45616336,45616625,45617462,45618060	45584205,45591270,45600457,45602365,45605016,45613248,45614181,45614366,45615201,45615471,45616393,45616703,45617591,45618244	1.000000
neural_cell	chr7	130428387	130428393	130428392	-	RAMPAGE_only	6	7	12	0.222694	3.095795	chr7	130428142	130428453	SINE|Alu|AluSx1	+	chr7	130421852	130441024	CEP41|ENST00000334451.6	-	130421852,130426645,130427954,130440933	130422007,130426759,130428018,130441024	0.500000
neural_cell	chr3	9987116	9987163	9987162	+	High_confidence	19	19	75	1.391837	5.782022	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.533333
neural_cell	chr9	87042106	87042130	87042110	-	High_confidence	8	8	29	0.538177	4.208410	chr9	87041882	87047900	LINE|L1|L1PA3	+	chr9	87008450	87042126	LOC440173|NR_027471.1	-	87008450,87041870	87010210,87042126	0.862069
neural_cell	chr3	44729826	44729827	44729826	+	High_confidence	4	5	6	0.111347	2.584963	chr3	44729868	44730030	SINE|MIR|MIRc	+	chr3	44729630	44734299	ZNF501|ENST00000491543.5	+	44729630,44731475,44734196	44730015,44731560,44734299	0.666667
neural_cell	chr11	65016272	65016274	65016272	+	RAMPAGE_only	13	23	23	0.426830	4.175736	chr11	65016219	65016460	LINE|L2|L2a	-	chr11	65497687	65506431	MALAT1|ENST00000619449.2	+	65497687,65498681,65498968,65506259	65497865,65498734,65503905,65506431	0.956522
neural_cell	chr21	42524957	42524994	42524977	+	RAMPAGE_only	64	107	281	5.214751	6.141216	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42513913	42581440	SLC37A1|ENST00000352133.2	+	42513913,42518276,42525775,42534697,42535471,42539511,42542403,42543435,42547102,42554061,42558957,42562077,42563814,42564707,42565826,42566984,42568359,42574817,42579735,42580344	42514717,42518510,42525857,42534830,42535550,42539647,42542480,42543602,42547140,42554142,42559089,42562168,42563877,42564793,42565875,42567058,42568438,42574915,42579800,42581440	0.825623
neural_cell	chr9	123236936	123236970	123236969	-	RAMPAGE_only	4	5	12	0.222694	2.845351	chr9	123236851	123237154	SINE|Alu|AluSz	+	chr9	123179006	123213908	STRBP|ENST00000479114.2	-	123179006,123184131,123212584,123213588	123179227,123184298,123212708,123213908	0.916667
neural_cell	chr4	56436945	56436946	56436945	+	High_confidence	6	6	6	0.111347	2.584963	chr4	56436712	56437014	SINE|Alu|AluSx	+	chr4	56436151	56464579	PAICS|ENST00000512576.2	+	56436151,56441662,56446694,56448417,56448709,56450618,56451871,56453602,56459371	56436328,56441860,56446873,56448597,56448823,56450702,56452052,56453761,56464579	1.000000
neural_cell	chr4	71233133	71233152	71233133	+	RAMPAGE_only	6	6	10	0.185578	2.921928	chr4	71233156	71233254	LINE|L2|L2a	+	chr4	71236028	71349930	SLC4A4|ENST00000639096.1	+	71236028,71255219,71339369,71349911	71236649,71255399,71339505,71349930	0.800000
neural_cell	chr4	61517335	61517363	61517335	+	RAMPAGE_only	10	10	22	0.408272	4.021928	chr4	61517137	61518029	DNA|hAT-Charlie|Charlie17b	+	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.818182
neural_cell	chr7	96979230	96979348	96979323	-	RAMPAGE_only	6	6	47	0.872218	4.760457	chr7	96979316	96979617	SINE|Alu|AluSz	+	chr7	96978467	97004298	MSTRG.19211.10	-	96978467,97003276	96979587,97004298	0.893617
neural_cell	chr12	77435874	77435896	77435895	+	RAMPAGE_only	2	2	7	0.129905	2.521641	chr12	77435615	77436232	LTR|ERVL-MaLR|MLT1E2	-	chr12	77324640	78007031	NAV3|ENST00000550042.2	+	77324640,77571858,77940318,77941080,77966228,77968518,77994802,77998336,78006418	77325214,77572266,77940436,77941133,77966301,77968702,77994871,77998476,78007031	1.000000
neural_cell	chr5	21918583	21918586	21918585	-	RAMPAGE_only	15	20	26	0.482504	3.703465	chr5	21918401	21918774	LTR|ERVL-MaLR|THE1D	-	chr5	21751694	21889847	CDH12|ENST00000521384.5	-	21751694,21755590,21760557,21764977,21783357,21802166,21816944,21842160,21854670,21889584	21752236,21755842,21760675,21765099,21783494,21802420,21817132,21842328,21854790,21889847	0.730769
neural_cell	chr12	95859623	95859637	95859623	+	High_confidence	4	4	12	0.222694	2.584963	chr12	95859414	95859977	LINE|L2|L2c	-	chr12	95858930	95866460	SNRPF|NM_003095.2	+	95858930,95861167,95865323,95866004	95859076,95861293,95865388,95866460	1.000000
neural_cell	chr3	183452137	183452138	183452137	+	RAMPAGE_only	15	16	17	0.315483	3.125000	chr3	183452059	183452354	SINE|Alu|AluSz6	-	chr3	183447650	183455625	LINC00888|ENST00000468380.1	+	183447650,183452077,183454011,183455198	183447947,183452512,183454093,183455625	0.941176
neural_cell	chr11	65181205	65181223	65181205	+	High_confidence	4	4	15	0.278367	3.773557	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.933333
neural_cell	chr1	1721671	1721673	1721672	-	High_confidence	4	7	10	0.185578	2.947703	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.700000
neural_cell	chr13	114284286	114284294	114284293	+	RAMPAGE_only	5	5	16	0.296925	3.373557	chr13	114284081	114284352	SINE|Alu|AluSg	+	chr13	114285974	114291718	UPF3A|ENST00000481131.5	+	114285974,114286518,114291488,114291633	114286400,114286629,114291544,114291718	0.875000
neural_cell	chr10	72355126	72355169	72355145	-	High_confidence	14	14	45	0.835102	4.597083	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.866667
neural_cell	chr12	78955563	78955564	78955563	+	RAMPAGE_only	11	12	12	0.222694	3.418296	chr12	78955385	78955684	LTR|ERVL-MaLR|MLT1A0	-	chr12	78964034	79285794	SYT1|ENST00000547046.5	+	78964034,78977798,79047296,79217502,79285786	78964150,78977931,79047362,79217685,79285794	0.666667
neural_cell	chr5	116085461	116085480	116085461	+	High_confidence	17	20	69	1.280490	5.110282	chr5	116085484	116085794	DNA|hAT-Charlie|MER113	+	chr5	116085461	116293290	COMMD10|NM_001308080.1	+	116085461,116087496,116091078,116092544,116134067,116291516,116292450	116085606,116087587,116091189,116092700,116134178,116291576,116293290	0.695652
neural_cell	chrX	990252	990262	990252	+	High_confidence	6	6	10	0.185578	3.121928	chrX	990175	990498	LTR|ERV1|LTR9	+	chrX	990220	994365	AL672277.1|ENST00000420865.6	+	990220,993984	990427,994365	0.500000
neural_cell	chr1	166850222	166850235	166850222	+	RAMPAGE_only	3	3	7	0.129905	2.521641	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
neural_cell	chr17	59619888	59619923	59619894	+	High_confidence	4668	5731	18687	346.790205	5.517274	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.977846
neural_cell	chr7	10973327	10973341	10973335	+	High_confidence	33	33	96	1.781552	6.103912	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.812500
neural_cell	chr8	80485592	80485619	80485592	+	High_confidence	60	60	150	2.783675	6.336063	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.780000
neural_cell	chr3	194486593	194486632	194486620	-	High_confidence	2	3	13	0.241252	3.546594	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	1.000000
neural_cell	chr4	102431244	102431271	102431244	-	High_confidence	13	13	57	1.057796	5.155046	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.719298
neural_cell	chr17	133524	133553	133524	-	RAMPAGE_only	4	4	14	0.259810	2.873141	chr17	133330	133890	LTR|ERV1|MER4A	+	chr17	88640	118578	AC240565.1|ENST00000624936.2	-	88640,97268,98892,101108,102057,105559,106754,118382	88705,97797,98951,101174,102273,105691,106864,118578	0.857143
neural_cell	chr22	35982454	35982455	35982454	-	RAMPAGE_only	10	10	10	0.185578	3.321928	chr22	35982304	35982559	LINE|L2|L2c	+	chr22	35768267	35961666	RBFOX2|ENST00000408983.2	-	35768267,35778024,35781599,35809779,35938846,35961562	35768349,35778078,35781746,35810004,35938897,35961666	0.900000
neural_cell	chr11	46090497	46090498	46090497	-	RAMPAGE_only	6	6	6	0.111347	2.584963	chr11	46090495	46090712	DNA|hAT-Charlie|MER103C	-	chr11	45971347	46092205	PHF21A|ENST00000531959.5	-	45971347,45979759,46076753,46079133,46084165,46092182	45971367,45979966,46076840,46079166,46084302,46092205	0.833333
neural_cell	chr2	153872174	153872216	153872174	+	High_confidence	4	7	28	0.519619	4.088221	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.892857
neural_cell	chr7	64993239	64993323	64993322	-	RAMPAGE_only	7	7	34	0.630966	3.895424	chr7	64990915	64999343	LTR|ERV1|HERV3-int	-	chr7	64971775	65006653	MSTRG.19009.1	-	64971775,64981386,64981983,64989946,65006540	64979536,64981482,64982116,64993414,65006653	1.000000
neural_cell	chr10	102449836	102449845	102449836	+	High_confidence	20	20	70	1.299048	5.215636	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.857143
neural_cell	chr7	30594389	30594396	30594389	-	High_confidence	16	25	53	0.983565	4.482335	chr7	30594385	30594501	SINE|MIR|MIR3	+	chr7	30578069	30594743	MSTRG.18883.42	-	30578069,30579230,30584710,30585329,30594710	30579128,30579314,30584808,30585479,30594743	0.905660
neural_cell	chrX	103607556	103607580	103607563	+	High_confidence	3	3	13	0.241252	3.180833	chrX	103607556	103607707	SINE|MIR|MIRb	+	chrX	103607450	103609927	TCEAL3|ENST00000372628.5	+	103607450,103608603,103609042	103607716,103608673,103609927	1.000000
neural_cell	chr2	104507330	104507331	104507330	+	RAMPAGE_only	7	7	7	0.129905	2.521641	chr2	104507130	104507346	SINE|MIR|MIR	-	chr2	104434377	104512757	LINC01102|ENST00000447380.1	+	104434377,104505865,104507231,104512042	104434523,104506303,104507406,104512757	0.857143
neural_cell	chr14	39170586	39170629	39170606	-	High_confidence	3	3	14	0.259810	3.546594	chr14	39170565	39170853	SINE|Alu|AluSp	+	chr14	39147810	39170532	TRAPPC6B|ENST00000469361.5	-	39147810,39151745,39154210,39158284,39170014	39150381,39151839,39154294,39159550,39170532	0.928571
neural_cell	chr12	111841683	111841723	111841708	-	High_confidence	4	4	22	0.408272	2.954004	chr12	111841557	111841731	SINE|MIR|MIRb	+	chr12	111839776	111841710	MAPKAPK5-AS1|ENST00000590479.5	-	111839776,111840332,111841326,111841683	111840003,111840477,111841470,111841710	0.863636
neural_cell	chr22	50757200	50757216	50757212	+	High_confidence	4	4	10	0.185578	3.169925	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.500000
neural_cell	chr19	58305621	58305670	58305664	+	High_confidence	18	18	122	2.264055	5.697264	chr19	58305670	58306101	LTR|ERVK|LTR3	+	chr19	58305376	58315203	MSTRG.11494.30	+	58305376,58306087,58314747	58305445,58312462,58315203	0.844262
neural_cell	chr6	48111244	48111275	48111247	-	RAMPAGE_only	7	7	31	0.575293	3.918508	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47851654	48069126	MSTRG.18132.1	-	47851654,48008633,48068229,48068952	47879936,48009114,48068641,48069126	0.516129
neural_cell	chr15	49225345	49225346	49225345	+	RAMPAGE_only	11	11	12	0.222694	2.732159	chr15	49225286	49225623	DNA|hAT-Charlie|MER1B	+	chr15	49239219	49319707	GALK2|ENST00000561014.1	+	49239219,49281986,49283565,49292326,49318110,49319603	49239367,49282085,49283718,49292537,49318192,49319707	0.916667
neural_cell	chr6	47984363	47984364	47984363	-	RAMPAGE_only	16	16	18	0.334041	3.410417	chr6	47984188	47984562	LTR|ERVL-MaLR|THE1C	-	chr6	47878027	48068689	PTCHD4|NM_001013732.3	-	47878027,48008633,48068229	47879936,48009114,48068689	0.777778
neural_cell	chr9	114588230	114588233	114588232	+	High_confidence	3	6	8	0.148463	2.521641	chr9	114588242	114588408	LINE|L2|L2c	+	chr9	114587745	114598373	ATP6V1G1|ENST00000374050.3	+	114587745,114592551,114597569	114587920,114592652,114598373	0.750000
neural_cell	chr5	172063775	172063798	172063775	-	RAMPAGE_only	2	2	9	0.167020	2.947703	chr5	172063744	172063790	SINE|MIR|MIR1_Amn	+	chr5	172055721	172061630	STK10|ENST00000523615.1	-	172055721,172057348,172061138	172055776,172057473,172061630	0.888889
neural_cell	chr1	84174501	84174504	84174501	+	RAMPAGE_only	6	6	10	0.185578	2.641604	chr1	84174125	84174565	LINE|L2|L2c	+	chr1	84178834	84184046	PRKACB|ENST00000467507.1	+	84178834,84182199,84184036	84179238,84182328,84184046	0.700000
neural_cell	chr7	148262958	148262964	148262958	+	High_confidence	4	4	9	0.167020	2.500000	chr7	148262800	148262969	LTR|ERV1|MER90	-	chr7	148263054	148420920	CNTNAP2|ENST00000636242.1	+	148263054,148267032,148383648,148409390,148415416	148263236,148267126,148383888,148409471,148420920	0.888889
neural_cell	chr17	8162514	8162560	8162559	-	High_confidence	4	4	17	0.315483	3.875000	chr17	8162498	8162591	SINE|MIR|MIR3	+	chr17	8158409	8162932	MSTRG.8706.22	-	8158409,8161472,8161607,8162248	8160871,8161524,8161766,8162932	0.941176
neural_cell	chr13	37000283	37000294	37000293	+	High_confidence	3	3	8	0.148463	2.521641	chr13	37000063	37000363	SINE|Alu|AluY	+	chr13	37000540	37009614	EXOSC8|NM_181503.2	+	37000540,37002272,37002487,37002933,37004515,37005919,37006114,37006974,37008056,37008728,37009183	37000822,37002309,37002551,37003007,37004561,37006025,37006160,37007071,37008177,37008835,37009614	0.750000
neural_cell	chr22	50783136	50783149	50783148	+	High_confidence	4	4	10	0.185578	2.921928	chr22	50783102	50783247	SINE|Alu|AluJr	-	chr22	50783253	50799305	RPL23AP82|ENST00000467796.5	+	50783253,50785172,50798654	50783294,50785293,50799305	1.000000
neural_cell	chr10	99653906	99653907	99653906	-	RAMPAGE_only	7	7	7	0.129905	2.521641	chr10	99653901	99654098	LINE|L2|L2c	-	chr10	99651594	99659284	AL133353.1|ENST00000452391.2	-	99651594,99653824,99659144	99652210,99653905,99659284	0.714286
neural_cell	chr19	51354529	51354546	51354529	-	High_confidence	2	2	8	0.148463	2.807355	chr19	51354373	51354482	SINE|MIR|MIR3	-	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.750000
neural_cell	chr11	61811820	61811821	61811820	-	High_confidence	10	10	10	0.185578	2.721928	chr11	61811607	61811887	SINE|Alu|AluSx1	-	chr11	61803425	61810885	FADS1|ENST00000539999.1	-	61803425,61803669,61804684,61806663,61810750	61803459,61803767,61804761,61806724,61810885	1.000000
neural_cell	chr7	158707798	158707838	158707837	-	RAMPAGE_only	6	7	21	0.389714	3.916127	chr7	158706809	158708087	LTR|ERV1|LTR2752	-	chr7	158631168	158704831	NCAPG2|NM_017760.6	-	158631168,158644288,158645518,158646459,158650831,158652292,158654594,158655117,158655338,158656259,158656551,158658337,158662193,158664183,158664527,158671513,158675476,158679959,158680720,158683299,158686171,158687347,158689818,158690567,158692841,158693308,158701821,158704723	158631717,158644388,158645619,158646563,158650972,158652480,158654694,158655258,158655455,158656433,158656705,158658408,158662367,158664296,158664750,158671666,158675656,158680085,158680816,158683386,158686241,158687442,158689953,158690722,158692956,158693497,158701938,158704831	0.952381
neural_cell	chr13	30429288	30429289	30429288	-	RAMPAGE_only	7	11	11	0.204136	3.459432	chr13	30428989	30429302	SINE|Alu|AluSq2	+	chr13	30202629	30307487	KATNAL1|NM_032116.4	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30307330	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307487	0.909091
neural_cell	chr9	95874403	95874406	95874405	+	High_confidence	4	7	10	0.185578	2.947703	chr9	95874437	95874902	LTR|ERVL-MaLR|MLT1D	+	chr9	95874440	96014571	MSTRG.20931.1	+	95874440,95880868,95897848,95907077,95915667,95916226,95921174,95922304,95923259,95928078,95928718,95941453,95955913,95966561,95970575,95971932,95978060,96004519,96012224	95876084,95881293,95897971,95907271,95915829,95916434,95921315,95922418,95923379,95928150,95928864,95941549,95956013,95966714,95970656,95973088,95978215,96004701,96014571	0.900000
neural_cell	chr19	21286978	21287041	21287008	-	RAMPAGE_only	28	28	90	1.670205	4.979216	chr19	21286906	21287212	SINE|Alu|AluSq2	-	chr19	21270059	21329336	MSTRG.10852.1	-	21270059,21292167,21309245,21310500,21329209	21291768,21294739,21309341,21310627,21329336	0.944444
neural_cell	chr9	123179152	123179175	123179170	-	RAMPAGE_only	2	2	10	0.185578	2.947703	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.900000
neural_cell	chr13	37915222	37915224	37915223	+	RAMPAGE_only	7	10	14	0.259810	3.546594	chr13	37914791	37915343	LTR|ERV1|MER61E	-	chr13	37934564	38048169	LINC02334|ENST00000617568.1	+	37934564,37997811,38013403,38029648,38043950	37935037,37997937,38013501,38029691,38048169	0.500000
neural_cell	chr3	33446682	33446694	33446693	+	High_confidence	9	10	16	0.296925	2.827820	chr3	33446461	33447026	LTR|ERV1|LTR12C	+	chr3	33446596	33455317	MSTRG.14537.1	+	33446596,33453035	33447137,33455317	1.000000
neural_cell	chrX	103607652	103607653	103607652	+	High_confidence	27	27	37	0.686640	4.321721	chrX	103607556	103607707	SINE|MIR|MIRb	+	chrX	103607450	103609927	TCEAL3|ENST00000372628.5	+	103607450,103608603,103609042	103607716,103608673,103609927	0.945946
neural_cell	chr2	232700388	232700389	232700388	+	RAMPAGE_only	9	9	9	0.167020	2.725481	chr2	232700368	232700418	LINE|RTE-BovB|MamRTE1	-	chr2	232697382	232736648	GIGYF2|ENST00000489328.1	+	232697382,232700584,232703423,232735154,232735762	232697392,232700654,232703489,232735238,232736648	0.888889
neural_cell	chr1	40456993	40457051	40457003	+	RAMPAGE_only	4	4	22	0.408272	4.152391	chr1	40456917	40457007	DNA|TcMar-Tigger|Tigger19b	-	chr1	40450664	40463718	ZFP69B|NM_023070.2	+	40450664,40454202,40456944,40457343,40462420	40451088,40454288,40457071,40457439,40463718	1.000000
neural_cell	chr6	31893362	31893363	31893362	-	RAMPAGE_only	27	27	29	0.538177	4.236369	chr6	31893329	31893615	SINE|Alu|AluJr	-	chr6	31879758	31896504	EHMT2|ENST00000480912.5	-	31879758,31880672,31881013,31882698,31882893,31883361,31883805,31884391,31884644,31884890,31886580,31886774,31886994,31887576,31887778,31888040,31888362,31888598,31888968,31889227,31889467,31892406,31892693,31892825,31893361,31896262	31880264,31880848,31881092,31882785,31883009,31883439,31883950,31884559,31884799,31885016,31886682,31886897,31887101,31887659,31887961,31888276,31888506,31888747,31889070,31889342,31889602,31892562,31892734,31892910,31893662,31896504	0.931034
neural_cell	chr22	26646874	26646878	26646875	+	High_confidence	4	6	10	0.185578	2.921928	chr22	26646780	26647058	LTR|Gypsy?|LTR85c	+	chr22	26646639	26665639	MIAT|ENST00000418918.5	+	26646639,26663315,26665456	26646959,26663398,26665639	0.900000
neural_cell	chr3	138347699	138347758	138347757	+	High_confidence	16	16	84	1.558858	4.386414	chr3	138347598	138347891	SINE|Alu|AluSx	-	chr3	138347696	138405533	MRAS|ENST00000289104.8	+	138347696,138372865,138397323,138398468,138400533,138402169	138348325,138373076,138397477,138398568,138400613,138405533	0.976190
neural_cell	chrX	103577211	103577212	103577211	+	High_confidence	7	11	11	0.204136	3.459432	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
neural_cell	chr1	210094503	210094525	210094503	+	RAMPAGE_only	2	2	11	0.204136	2.845351	chr1	210094489	210094534	DNA|hAT-Ac|OldhAT1	+	chr1	210021045	210162967	SYT14|ENST00000534859.2	+	210021045,210094321,210100011,210155720,210159399,210160728	210021254,210094593,210100461,210155910,210159477,210162967	0.727273
neural_cell	chr16	68972838	68972949	68972838	+	High_confidence	74	105	750	13.918374	6.742622	chr16	68972577	68973226	LINE|L2|L2a	-	chr16	68973039	69083515	TANGO6|ENST00000562000.5	+	68973039,68974027,69022827,69040307,69083484	68973143,68974168,69022979,69040421,69083515	0.596000
neural_cell	chr22	24011715	24011716	24011715	+	High_confidence	9	9	10	0.185578	2.947703	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.900000
neural_cell	chr17	1872144	1872148	1872147	+	High_confidence	3	4	6	0.111347	2.584963	chr17	1872009	1872188	DNA|DNA|UCON78	+	chr17	1872126	1879305	RPA1|ENST00000573924.1	+	1872126,1872433,1875660,1877211,1878992,1879214	1872211,1872526,1875793,1877314,1879061,1879305	0.833333
neural_cell	chr4	75515016	75515056	75515043	-	High_confidence	2	3	11	0.204136	2.646439	chr4	75514832	75515141	LINE|L2|L2c	-	chr4	75491910	75514764	RCHY1|ENST00000514021.1	-	75491910,75494100,75508823,75509176,75514662	75491933,75494179,75508935,75509296,75514764	0.727273
neural_cell	chr8	130017188	130017197	130017193	-	High_confidence	5	5	13	0.241252	3.700440	chr8	130017097	130017284	LINE|L2|L2a	-	chr8	129862249	130017129	FAM49B|ENST00000523993.5	-	129862249,129871374,129879388,129903311,129904498,129970942,130017017	129862334,129871496,129879471,129903350,129904585,129970995,130017129	0.769231
neural_cell	chr3	117193124	117193131	117193124	-	RAMPAGE_only	5	5	12	0.222694	3.084963	chr3	117192961	117193320	LTR|ERVL-MaLR|THE1D	-	chr3	116019514	117997592	MSTRG.15032.12	-	116019514,116086323,116444876,117009229,117139200,117997181	116019640,116086556,116444955,117009374,117339787,117997592	0.500000
neural_cell	chr2	96303166	96303267	96303177	-	RAMPAGE_only	49	63	207	3.841471	5.853235	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.990338
neural_cell	chr11	3380901	3380925	3380917	+	High_confidence	3	4	12	0.222694	3.584963	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.750000
neural_cell	chr2	171083474	171083494	171083493	-	RAMPAGE_only	7	7	17	0.315483	3.969816	chr2	171083456	171083558	LINE|CR1|CR1_Mam	-	chr2	171053716	171091810	TLK1|ENST00000486857.5	-	171053716,171055082,171056470,171058150,171061080,171082780,171091613	171053853,171055172,171056566,171058197,171061156,171082852,171091810	0.941176
neural_cell	chr12	66885598	66885667	66885655	-	RAMPAGE_only	13	13	53	0.983565	5.209867	chr12	66885617	66885912	LTR|Gypsy|MamGypLTR2c	+	chr12	66529844	66804186	GRIP1|ENST00000541947.1	-	66529844,66539077,66541814,66596846,66804052	66529914,66539223,66541950,66596927,66804186	0.509434
neural_cell	chr20	18793975	18794000	18793975	-	High_confidence	13	16	66	1.224817	5.579985	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18787970	18793982	LINC00652|NR_026884.1	-	18787970,18789573,18793664	18788898,18789709,18793982	0.757576
neural_cell	chr19	17336685	17336720	17336685	+	High_confidence	49	54	104	1.930015	5.583115	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.971154
neural_cell	chr4	71233178	71233182	71233178	+	RAMPAGE_only	9	9	18	0.334041	3.454822	chr4	71233156	71233254	LINE|L2|L2a	+	chr4	71236028	71349930	SLC4A4|ENST00000639096.1	+	71236028,71255219,71339369,71349911	71236649,71255399,71339505,71349930	0.944444
neural_cell	chr2	191245143	191245164	191245163	+	High_confidence	7	7	18	0.334041	4.087463	chr2	191245108	191245343	LINE|L1|L1M4b	+	chr2	191245184	191346274	MYO1B|ENST00000418908.5	+	191245184,191276886,191296110,191329934,191341460,191346235	191245257,191277030,191296226,191330029,191341565,191346274	0.944444
neural_cell	chr6	133952729	133952730	133952729	+	High_confidence	14	14	14	0.259810	2.692381	chr6	133952660	133952828	DNA|hAT-Charlie|Charlie2a	+	chr6	133953162	133987500	TBPL1|NM_004865.3	+	133953162,133980081,133982567,133982816,133984375,133984576,133986960	133953425,133980260,133982650,133982880,133984479,133984671,133987500	1.000000
neural_cell	chr2	70085589	70085630	70085629	-	High_confidence	12	13	35	0.649524	4.620152	chr2	70085547	70085755	SINE|MIR|MIR	+	chr2	69964409	70085595	PCBP1-AS1|ENST00000628322.2	-	69964409,69996685,70018014,70032132,70051202,70077300,70085546	69964427,69996888,70018131,70032255,70051305,70077381,70085595	0.628571
neural_cell	chr10	116929848	116929870	116929855	-	RAMPAGE_only	2	3	8	0.148463	2.521641	chr10	116929745	116929837	LINE|L2|L2b	-	chr10	116884796	116974170	SHTN1|ENST00000497044.5	-	116884796,116901764,116906626,116911789,116915374,116921433,116927791,116929848,116940465,116944923,116948915,116951908,116954041,116960135,116968651,116973855	116886566,116901957,116906747,116911843,116915484,116921516,116927891,116930002,116940612,116945018,116948997,116952006,116954210,116960230,116968712,116974170	0.750000
neural_cell	chr14	30191597	30191622	30191597	-	High_confidence	11	13	22	0.408272	3.880180	chr14	30191268	30191871	LTR|Gypsy?|LTR85a	-	chr14	29663811	30191898	PRKD1|ENST00000549503.1	-	29663811,29666076,29725535,30047709,30191298,30191865	29663859,29666208,29725674,30047787,30191450,30191898	0.863636
neural_cell	chr1	225774965	225774970	225774967	+	RAMPAGE_only	12	23	35	0.649524	4.514718	chr1	225774781	225775174	LTR|ERVL-MaLR|MSTA	+	chr1	225777812	225790466	SRP9|NM_001130440.1	+	225777812,225783299,225786861,225789239	225778012,225783368,225786985,225790466	0.942857
neural_cell	chr2	113625616	113625644	113625643	-	RAMPAGE_only	3	3	6	0.111347	2.584963	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	1.000000
neural_cell	chr11	27689877	27689879	27689878	-	RAMPAGE_only	8	13	13	0.241252	3.238901	chr11	27689707	27689993	LINE|L1|L1PA10	-	chr11	27494417	27506779	LIN7C|NM_018362.3	-	27494417,27499358,27501494,27501801,27506715	27498804,27499568,27501566,27501920,27506779	0.923077
neural_cell	chr4	6373043	6373062	6373043	-	RAMPAGE_only	3	3	15	0.278367	3.506891	chr4	6372981	6373381	LTR|ERVL-MaLR|MLT1J2	+	chr4	6320577	6381870	PPP2R2C|ENST00000335585.9	-	6320577,6329261,6333561,6347845,6372522,6375818,6378406,6380996,6381776	6323593,6329353,6333731,6348010,6372700,6375931,6378572,6381094,6381870	0.866667
neural_cell	chr5	40463561	40463563	40463561	+	High_confidence	7	9	13	0.241252	3.392747	chr5	40463336	40463782	LTR|ERVL-MaLR|MSTC	+	chr5	40463561	40504563	AC114977.1|ENST00000649444.1	+	40463561,40486375,40503870	40463680,40486498,40504563	0.846154
neural_cell	chr21	33945809	33945810	33945809	-	RAMPAGE_only	116	117	117	2.171266	4.477630	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	0.991453
neural_cell	chr3	135965673	135965773	135965757	+	High_confidence	162	215	3612	67.030889	6.604228	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.992248
neural_cell	chr14	27529239	27529297	27529239	+	RAMPAGE_only	2189	2432	5344	99.173054	8.240236	chr14	27529044	27529416	LTR|ERVL-MaLR|THE1B	+	chr14	27612587	27639636	LINC00645|NR_039992.2	+	27612587,27613420,27619822,27634243,27636419	27612677,27613496,27619873,27634344,27639636	0.556325
neural_cell	chr5	96934229	96934231	96934230	+	RAMPAGE_only	15	22	28	0.519619	4.578781	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.571429
neural_cell	chr9	72363483	72363507	72363506	-	High_confidence	6	6	19	0.352599	3.947703	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.894737
neural_cell	chr1	39026781	39026791	39026781	+	High_confidence	2	2	8	0.148463	2.807355	chr1	39026635	39026832	LINE|L2|L2	+	chr1	39026317	39034636	NDUFS5|ENST00000372967.3	+	39026317,39028722,39034391	39026398,39028940,39034636	0.875000
neural_cell	chr8	129904522	129904538	129904522	-	RAMPAGE_only	4	4	14	0.259810	3.700440	chr8	129904249	129904641	LTR|ERVL|LTR16E2	+	chr8	129849291	129903351	FAM49B|ENST00000639004.1	-	129849291,129849326,129850834,129852161,129854265,129855610,129855674,129862228,129862262,129871374,129879388,129903311	129849324,129849369,129850914,129852278,129854343,129855673,129855747,129862260,129862335,129871496,129879471,129903351	0.928571
neural_cell	chr6	133952656	133952693	133952692	+	High_confidence	7	10	21	0.389714	3.748995	chr6	133952660	133952828	DNA|hAT-Charlie|Charlie2a	+	chr6	133953162	133987500	TBPL1|NM_004865.3	+	133953162,133980081,133982567,133982816,133984375,133984576,133986960	133953425,133980260,133982650,133982880,133984479,133984671,133987500	0.809524
neural_cell	chr19	11356825	11356950	11356881	+	High_confidence	9	10	68	1.261933	5.307764	chr19	11356842	11356927	SINE|MIR|MIRc	+	chr19	11357695	11359894	PLPPR2|ENST00000588196.1	+	11357695,11359531	11357739,11359894	0.867647
neural_cell	chr5	109383412	109383500	109383412	-	High_confidence	7	8	56	1.039239	4.610804	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.946429
neural_cell	chr16	75376982	75376997	75376996	-	RAMPAGE_only	13	15	47	0.872218	4.836396	chr16	75376668	75377149	LTR|ERV1|MER66B	+	chr16	75293905	75363035	CFDP1|ENST00000564793.1	-	75293905,75305023,75362874	75294042,75305182,75363035	0.872340
neural_cell	chr6	2989613	2989640	2989639	+	High_confidence	3	3	9	0.167020	2.750000	chr6	2989586	2990082	LTR|ERV1|LTR73	-	chr6	2988657	2990252	LINC01011|ENST00000454015.1	+	2988657,2989527	2988709,2990252	0.666667
neural_cell	chr16	30535273	30535291	30535273	+	High_confidence	10	10	49	0.909334	4.995766	chr16	30535226	30535680	LTR|ERV1|MER4A1	-	chr16	30534751	30537144	AC002310.1|ENST00000457283.3	+	30534751,30536428	30535480,30537144	0.836735
neural_cell	chrX	119942906	119942941	119942906	+	High_confidence	6	7	38	0.705198	4.195296	chrX	119942772	119942943	LINE|L2|L2c	-	chrX	119942833	119992809	RHOXF1P3|ENST00000640298.1	+	119942833,119980250,119990330,119991366,119992500	119943926,119980376,119991135,119991701,119992809	1.000000
neural_cell	chr5	149509878	149509942	149509878	-	RAMPAGE_only	7	7	31	0.575293	3.978334	chr5	149509722	149509839	SINE|Alu|AluJb	-	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.903226
neural_cell	chrX	283480	283509	283508	+	High_confidence	12	25	53	0.983565	4.997791	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.943396
neural_cell	chr14	102083051	102083112	102083105	-	RAMPAGE_only	5	6	47	0.872218	4.882045	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.978723
neural_cell	chr7	54330669	54330670	54330669	+	High_confidence	5	6	6	0.111347	2.584963	chr7	54329994	54330847	LTR|ERVL|MER21C	-	chr7	54330696	54349845	LINC01445|NR_120516.1	+	54330696,54347293,54349364	54330818,54347365,54349845	0.833333
neural_cell	chr5	140655892	140655989	140655988	+	RAMPAGE_only	38	48	269	4.992057	5.615512	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.996283
neural_cell	chr6	28224870	28224902	28224885	+	High_confidence	29	29	110	2.041362	5.229683	chr6	28224900	28225028	LINE|L1|HAL1ME	+	chr6	28224885	28227207	ZSCAN9|ENST00000531941.1	+	28224885,28227011	28225268,28227207	0.863636
neural_cell	chr20	18137227	18137249	18137227	+	High_confidence	6	6	13	0.241252	3.392747	chr20	18137136	18137292	SINE|Alu|AluSz	+	chr20	18137854	18143169	PET117|NM_001164811.1	+	18137854,18142207	18138051,18143169	0.923077
neural_cell	chr7	130426815	130426898	130426863	-	High_confidence	36	51	159	2.950695	5.201716	chr7	130426822	130426949	SINE|MIR|MIR	+	chr7	130401932	130426979	CEP41|ENST00000472739.5	-	130401932,130402647,130404563,130411121,130412178,130416918,130426645	130401948,130402799,130404708,130411191,130412240,130416966,130426979	0.962264
neural_cell	chr8	28129278	28129363	28129333	+	High_confidence	13	16	142	2.635212	5.794804	chr8	28129241	28129415	SINE|MIR|MIR	-	chr8	28129318	28132404	ELP3|ENST00000520011.1	+	28129318,28132277	28129663,28132404	0.929577
neural_cell	chr21	15395242	15395262	15395261	-	RAMPAGE_only	7	7	21	0.389714	3.975418	chr21	15394804	15395650	LINE|L1|L1MC4a	+	chr21	15370521	15402305	AJ009632.2|ENST00000449602.1	-	15370521,15390577,15394472,15394999,15395462,15400497,15401987	15370911,15390618,15394506,15395129,15395497,15400549,15402305	0.952381
neural_cell	chr12	29317853	29317866	29317865	-	High_confidence	7	8	14	0.259810	3.807355	chr12	29317690	29317914	SINE|MIR|MIRb	-	chr12	29280414	29317848	LOC100506606|NR_103860.1	-	29280414,29282163,29292214,29293065,29307849,29309770,29317707	29281542,29282360,29292328,29293540,29308044,29309903,29317848	0.928571
neural_cell	chr2	29538189	29538190	29538189	+	RAMPAGE_only	9	9	9	0.167020	3.169925	chr2	29538208	29538633	LTR|ERVL-MaLR|MSTB	+	chr2	30231368	30260028	LBH|ENST00000395323.8	+	30231368,30234404,30257432	30231764,30234507,30260028	1.000000
neural_cell	chr3	129439763	129439801	129439763	-	High_confidence	5	5	22	0.408272	3.913977	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129437046	129439937	MBD4|ENST00000505883.1	-	129437046,129437807,129439729	129437308,129437950,129439937	0.636364
neural_cell	chr6	145815059	145815108	145815093	+	High_confidence	8	8	35	0.649524	4.743289	chr6	145815053	145815170	SINE|MIR|MIR3	-	chr6	145814894	145883439	AL356599.1|ENST00000452617.5	+	145814894,145828360,145881578,145883204	145815431,145828456,145881648,145883439	0.800000
neural_cell	chrX	69179542	69179561	69179554	+	High_confidence	10	10	25	0.463946	4.133661	chrX	69179485	69179669	LINE|L2|L2c	+	chrX	69179556	69209924	LINC00269|NR_103715.1	+	69179556,69201476,69204331,69204890,69208251	69179645,69201632,69204449,69205027,69209924	0.800000
neural_cell	chr11	10044722	10044746	10044743	-	High_confidence	3	3	10	0.185578	2.503258	chr11	10044702	10044753	LTR|ERV1|LTR10G	+	chr11	9993011	10044606	SBF2|ENST00000527019.5	-	9993011,9993920,10000913,10002556,10028451,10029764,10031047,10042843,10044518	9993103,9993998,10001022,10002689,10028557,10029875,10031170,10042981,10044606	0.800000
neural_cell	chr11	33141950	33141974	33141950	-	RAMPAGE_only	3	3	12	0.222694	2.918296	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33141430	33161491	CSTF3|NM_001033505.1	-	33141430,33141884,33161298	33141762,33141986,33161491	0.833333
neural_cell	chr1	42816883	42817033	42816883	-	High_confidence	69	105	538	9.984114	6.320573	chr1	42816684	42816893	SINE|MIR|MIRc	+	chr1	42807055	42817403	MSTRG.593.2	-	42807055,42816430	42807500,42817403	0.994424
neural_cell	chr3	125497340	125497378	125497340	-	RAMPAGE_only	3	3	9	0.167020	3.169925	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	1.000000
neural_cell	chr8	73748000	73748047	73748046	-	High_confidence	6	6	17	0.315483	3.577820	chr8	73748021	73748120	SINE|MIR|MIR	+	chr8	73549600	73747708	STAU2|NM_001164384.1	-	73549600,73582769,73595165,73603725,73613743,73615674,73617291,73673106,73688653,73738283,73747386	73552319,73582830,73595297,73603863,73613956,73615782,73617451,73673242,73688813,73738349,73747708	0.588235
neural_cell	chr7	11252826	11252876	11252875	+	High_confidence	5	5	23	0.426830	4.201841	chr7	11252764	11253207	LTR|ERVL|LTR40b	-	chr7	11252979	11520175	AC004160.1|ENST00000445839.5	+	11252979,11379286,11383796,11520051	11253225,11379369,11383908,11520175	0.782609
neural_cell	chr6	122444199	122444384	122444285	-	RAMPAGE_only	36	36	297	5.511676	4.999271	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	0.989899
neural_cell	chr1	161750348	161750456	161750428	+	High_confidence	16	26	141	2.616654	5.444123	chr1	161750400	161750488	LINE|L2|L2c	-	chr1	161749779	161753105	DUSP12|ENST00000464004.2	+	161749779,161751654,161751865,161752367,161753074	161750145,161751781,161751984,161752464,161753105	0.730496
neural_cell	chr19	41978605	41978630	41978621	-	RAMPAGE_only	4	4	13	0.241252	3.546594	chr19	41978480	41978588	LINE|L2|L2b	-	chr19	41966581	41993467	ATP1A3|NM_001256213.1	-	41966581,41967248,41967661,41968784,41969434,41970184,41970387,41975628,41976415,41977935,41978150,41978605,41981501,41981721,41981907,41984917,41985305,41985863,41986115,41987935,41988317,41988475,41993392	41966965,41967340,41967763,41968915,41969580,41970308,41970542,41975797,41976566,41978072,41978326,41978798,41981636,41981831,41982106,41985186,41985423,41985998,41986229,41988139,41988377,41988562,41993467	1.000000
neural_cell	chr2	1744904	1744929	1744906	-	High_confidence	6	9	31	0.575293	4.487123	chr2	1744859	1744905	SINE|MIR|MIR	-	chr2	1680252	1744852	PXDN|ENST00000485177.1	-	1680252,1683655,1684079,1687631,1691927,1693062,1744803	1680362,1683727,1684151,1687703,1691999,1693134,1744852	0.838710
neural_cell	chr12	6913839	6913840	6913839	+	High_confidence	17	17	19	0.352599	3.003113	chr12	6913590	6913862	SINE|Alu|AluSc8	-	chr12	6913744	6917107	ENO2|ENST00000537688.5	+	6913744,6914532,6915820,6916416,6916670,6917037	6913842,6914659,6915917,6916512,6916729,6917107	0.894737
neural_cell	chr6	132369074	132369088	132369087	-	RAMPAGE_only	4	4	10	0.185578	2.921928	chr6	132368781	132369142	DNA|TcMar-Tigger|Tigger7	-	chr6	132296068	132375065	MOXD1|ENST00000336749.3	-	132296068,132297786,132315634,132320628,132322678,132323930,132328012,132328414,132372607,132372829,132374630	132297317,132297955,132315777,132320688,132322870,132324097,132328115,132328594,132372691,132372997,132375065	1.000000
neural_cell	chr1	49257817	49257823	49257817	-	RAMPAGE_only	5	5	10	0.185578	3.121928	chr1	49257178	49257818	LINE|L1|L1PA3	-	chr1	48583869	49045714	AGBL4|ENST00000416121.5	-	48583869,48590832,48634492,48653336,48663151,48867190,49045583	48587166,48590985,48634604,48653451,48663241,48867230,49045714	0.500000
neural_cell	chr7	26399442	26399520	26399442	-	High_confidence	13	16	89	1.651647	5.702767	chr7	26399411	26399720	DNA|hAT-Charlie|MER33	+	chr7	26372018	26399418	LOC105375304|NR_136272.1	-	26372018,26399340	26372568,26399418	0.842697
neural_cell	chr1	168787065	168787088	168787065	+	High_confidence	9	9	26	0.482504	3.902175	chr1	168786791	168787303	LTR|ERVL-MaLR|MLT1L	+	chr1	168786940	168792888	LINC00626|NR_024160.1	+	168786940,168788780,168792330	168787228,168788889,168792888	0.615385
neural_cell	chr2	219279062	219279073	219279072	+	High_confidence	6	6	20	0.371157	4.247928	chr2	219278766	219279080	LINE|L2|L2c	-	chr2	219279266	219286900	DNAJB2|ENST00000336576.9	+	219279266,219279797,219280577,219281717,219281938,219282836,219283132,219283418,219284631	219279518,219279898,219280687,219281771,219282061,219282929,219283235,219283489,219286900	0.900000
neural_cell	chr7	128622517	128622529	128622517	+	RAMPAGE_only	4	4	8	0.148463	3.000000	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	1.000000
neural_cell	chr10	103181328	103181329	103181328	-	RAMPAGE_only	154	155	166	3.080600	6.159403	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.644578
neural_cell	chr6	30326167	30326197	30326196	+	High_confidence	3	3	9	0.167020	2.725481	chr6	30326146	30326284	LINE|L2|L2b	-	chr6	30326478	30329751	TRIM39|ENST00000458516.5	+	30326478,30328888,30329310	30326887,30329041,30329751	0.666667
neural_cell	chr10	102706282	102706283	102706282	-	RAMPAGE_only	15	15	16	0.296925	3.323231	chr10	102706170	102706459	SINE|Alu|AluSc8	+	chr10	102673730	102714407	ARL3|ENST00000260746.5	-	102673730,102685815,102689892,102699372,102705345,102714272	102676941,102686001,102689943,102699489,102705489,102714407	0.937500
neural_cell	chrX	131578779	131578791	131578790	-	High_confidence	5	5	10	0.185578	2.921928	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.800000
neural_cell	chr16	47143798	47143799	47143798	-	High_confidence	5	5	7	0.129905	2.807355	chr16	47143450	47143941	LTR|ERV1|LTR12C	+	chr16	47081633	47143709	NETO2|ENST00000303155.9	-	47081633,47086225,47109482,47122656,47122888,47128324,47129223,47131968,47143578	47083801,47086339,47109711,47122784,47122912,47128573,47129364,47132025,47143709	1.000000
neural_cell	chr6	2999224	2999237	2999236	+	High_confidence	4	4	10	0.185578	2.947703	chr6	2999098	2999242	LINE|L1|L1MD2	-	chr6	2999815	3019876	NQO2|NM_001290221.1	+	2999815,3002049,3003668,3004494,3006467,3010024,3012543,3015529,3016883,3019478	3000085,3002286,3003789,3004651,3006559,3010189,3012674,3015643,3016985,3019876	0.800000
neural_cell	chr14	90258079	90258080	90258079	+	RAMPAGE_only	9	9	14	0.259810	3.324863	chr14	90258077	90258330	SINE|MIR|MIRb	+	chr14	90256577	90272550	PSMC1|ENST00000543772.2	+	90256577,90259159,90263317,90263661,90264040,90265069,90268223,90269396,90270197,90272272	90256600,90259213,90263442,90263847,90264169,90265166,90268413,90269548,90270352,90272550	0.857143
neural_cell	chr7	80917465	80917522	80917484	-	High_confidence	103	113	665	12.340958	4.448272	chr7	80917362	80917475	SINE|tRNA|LFSINE_Vert	-	chr7	80827429	80918429	SEMA3C|ENST00000411788.5	-	80827429,80828584,80905828,80916678,80918300	80827487,80828745,80905916,80916819,80918429	0.972932
neural_cell	chr9	87497489	87497502	87497501	+	High_confidence	5	5	11	0.204136	3.321928	chr9	87497382	87497523	LINE|L2|L2a	+	chr9	87497680	87708634	DAPK1|NM_001288730.1	+	87497680,87498969,87604953,87637942,87639353,87639649,87639788,87640297,87640801,87641968,87643375,87645894,87646460,87647304,87648780,87649920,87651526,87658028,87668596,87681403,87686550,87697006,87698655,87700116,87703028,87706131	87497772,87499139,87605175,87638081,87639483,87639698,87639815,87640450,87640847,87642058,87643468,87646014,87646559,87647403,87648879,87650118,87651724,87658127,87668674,87681626,87686739,87697204,87698794,87700237,87703217,87708634	0.818182
neural_cell	chr2	159428356	159428388	159428372	-	RAMPAGE_only	5	6	25	0.463946	4.323856	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.840000
neural_cell	chr2	200888814	200888875	200888829	-	High_confidence	6	6	34	0.630966	4.741364	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.764706
neural_cell	chr4	75514908	75514933	75514932	+	High_confidence	3	5	12	0.222694	2.913977	chr4	75514832	75515141	LINE|L2|L2c	-	chr4	75514519	75527214	THAP6|ENST00000514480.1	+	75514519,75515432,75516771,75521735,75526959	75514991,75515532,75516979,75521861,75527214	0.916667
neural_cell	chr18	34847690	34847709	34847708	+	RAMPAGE_only	5	5	12	0.222694	2.845351	chr18	34847395	34847887	LTR|ERVL-MaLR|MLT1F1	-	chr18	34822361	34858364	DTNA|ENST00000587723.1	+	34822361,34827592,34848295,34851830,34858284	34822566,34827676,34848383,34851928,34858364	0.833333
neural_cell	chr11	123060115	123060253	123060174	-	High_confidence	18	18	284	5.270424	5.399072	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.676056
neural_cell	chr9	127653767	127653786	127653785	+	RAMPAGE_only	3	5	9	0.167020	2.725481	chr9	127653827	127654016	LINE|L2|L2b	+	chr9	127651623	127684513	STXBP1|ENST00000647107.1	+	127651623,127653714,127658374,127660029,127661101,127663204,127665246,127666165,127668079,127669897,127672050,127673180,127675803,127676643,127678430,127680156,127682405,127683917,127684367	127651652,127653796,127658451,127660108,127661205,127663353,127665331,127666296,127668187,127669958,127672116,127673261,127675942,127676753,127678532,127680242,127682560,127683970,127684513	1.000000
neural_cell	chr5	36252182	36252183	36252182	-	RAMPAGE_only	17	18	21	0.389714	3.826875	chr5	36252131	36252276	SINE|MIR|MIR3	-	chr5	36249332	36301900	RANBP3L|ENST00000502994.5	-	36249332,36251312,36253646,36255469,36256940,36257453,36260779,36261938,36264958,36265448,36268192,36269389,36269950,36271252,36301325	36249697,36251499,36253789,36255590,36257071,36257556,36260864,36262042,36265098,36265520,36268267,36269467,36269990,36271311,36301900	0.809524
neural_cell	chr9	20658543	20658590	20658568	+	High_confidence	19	19	91	1.688763	4.063205	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.923077
neural_cell	chr1	166850134	166850164	166850134	+	RAMPAGE_only	15	16	31	0.575293	4.513153	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.935484
neural_cell	chr3	195689355	195689361	195689358	+	High_confidence	2	2	7	0.129905	2.807355	chr3	195689376	195689522	LINE|L1|L1MC5a	+	chr3	195689377	195708807	MUC20-OT1|ENST00000451216.6	+	195689377,195689545,195708133,195708428,195708746	195689438,195689608,195708268,195708513,195708807	0.714286
neural_cell	chr6	10659521	10659565	10659557	+	High_confidence	2	3	13	0.241252	3.418296	chr6	10659300	10659575	SINE|Alu|AluY	+	chr6	10659497	10692860	AL358777.1|ENST00000649568.1	+	10659497,10672716,10684123,10685914,10686075,10689988	10659606,10672828,10684249,10685980,10686257,10692860	0.538462
neural_cell	chr1	30909634	30909637	30909636	-	High_confidence	13	23	28	0.519619	3.469670	chr1	30909565	30909754	LINE|L2|L2b	+	chr1	30873134	30908761	SDC3|ENST00000339394.6	-	30873134,30874296,30876551,30878622,30908448	30873377,30874588,30877165,30878740,30908761	0.750000
neural_cell	chr7	107580245	107580267	107580245	+	High_confidence	1293	1302	6344	117.730886	6.427482	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.944199
neural_cell	chr16	22007574	22007579	22007578	+	High_confidence	11	11	19	0.352599	3.725481	chr16	22006872	22007647	LINE|L2|L2a	+	chr16	22007637	22076378	MOSMO|ENST00000567004.1	+	22007637,22075486	22007696,22076378	0.578947
neural_cell	chr14	34377016	34377017	34377016	-	RAMPAGE_only	16	18	24	0.445388	4.251629	chr14	34376943	34377040	LINE|L2|L2c	+	chr14	33985380	34462774	EGLN3|ENST00000551935.5	-	33985380,33987011,34092320,34169490,34462715	33985507,33987162,34092402,34169646,34462774	0.500000
neural_cell	chr13	52661544	52661560	52661557	+	RAMPAGE_only	3	3	11	0.204136	2.663533	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
neural_cell	chr2	73736756	73736757	73736756	-	High_confidence	17	17	17	0.315483	3.007196	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73731905	73737335	TPRKB|ENST00000470012.1	-	73731905,73732583,73734428,73737301	73732285,73732700,73734591,73737335	1.000000
neural_cell	chr22	41256710	41256765	41256710	-	RAMPAGE_only	2	2	18	0.334041	3.683542	chr22	41256522	41256664	SINE|MIR|MIRb	-	chr22	41245614	41282514	RANGAP1|ENST00000455915.6	-	41245614,41249329,41249728,41251006,41252871,41254307,41256020,41256190,41256710,41257947,41261445,41264663,41268096,41274599,41280932	41246672,41249451,41249817,41251109,41252991,41254494,41256105,41256290,41256824,41258106,41261580,41264843,41268156,41274727,41282514	1.000000
neural_cell	chr3	117539477	117539533	117539508	-	RAMPAGE_only	8	8	55	1.020681	3.667873	chr3	117539423	117539795	LINE|L2|L2c	+	chr3	117450512	117997592	MSTRG.15032.23	-	117450512,117997181	117729179,117997592	0.800000
neural_cell	chr18	58953775	58953783	58953780	+	High_confidence	3	3	8	0.148463	2.750000	chr18	58953830	58953961	SINE|MIR|MIRc	+	chr18	58953183	58984799	ZNF532|ENST00000592249.5	+	58953183,58953517,58979054,58981469,58983971	58953282,58953799,58979167,58981617,58984799	1.000000
neural_cell	chr19	54448846	54448847	54448846	-	High_confidence	72	78	103	1.911457	5.445991	chr19	54448651	54448966	SINE|Alu|AluSg	+	chr19	54445035	54448602	LENG8-AS1|ENST00000416022.1	-	54445035,54448164	54445179,54448602	0.932039
neural_cell	chr3	203826	203836	203835	+	RAMPAGE_only	4	5	11	0.204136	3.459432	chr3	203780	203907	LTR|ERVL|LTR33	-	chr3	198006	341946	CHL1|ENST00000435603.5	+	198006,319682,325958,328166,340793,341911	198092,319867,326064,328354,340916,341946	0.636364
neural_cell	chr19	45450734	45450766	45450739	-	RAMPAGE_only	11	14	62	1.150586	5.683956	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45407332	45424365	ERCC1|ENST00000300853.7	-	45407332,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423780	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424365	0.500000
neural_cell	chr10	80344732	80344733	80344732	+	High_confidence	14	14	15	0.278367	3.324863	chr10	80344537	80344891	LTR|ERVL-MaLR|THE1A	+	chr10	80344744	80368073	DYDC2|NR_070308.1	+	80344744,80352436,80356259,80362434,80362950,80366687	80344815,80352617,80356596,80362590,80363073,80368073	0.533333
neural_cell	chr5	13932041	13932042	13932041	-	High_confidence	72	72	74	1.373280	5.694027	chr5	13931847	13932018	LINE|L1|L1ME4a	-	chr5	13911356	13932456	DNAH5|ENST00000508040.1	-	13911356,13913742,13914519,13916347,13917142,13919175,13920479,13922106,13923279,13928093,13931109,13932040	13911493,13913958,13914642,13916455,13917256,13919401,13920617,13922328,13923440,13928178,13931244,13932456	0.891892
neural_cell	chr6	132369141	132369167	132369141	-	RAMPAGE_only	3	3	12	0.222694	3.418296	chr6	132368781	132369142	DNA|TcMar-Tigger|Tigger7	-	chr6	132296068	132375065	MOXD1|ENST00000336749.3	-	132296068,132297786,132315634,132320628,132322678,132323930,132328012,132328414,132372607,132372829,132374630	132297317,132297955,132315777,132320688,132322870,132324097,132328115,132328594,132372691,132372997,132375065	1.000000
neural_cell	chr3	71728960	71728999	71728989	-	High_confidence	4	4	16	0.296925	3.456565	chr3	71728794	71728947	SINE|MIR|MIR3	-	chr3	71679288	71729118	EIF4E3|NM_001134650.1	-	71679288,71690009,71693874,71696459,71699613,71710411,71728475,71729073	71684728,71690165,71693941,71696520,71699708,71710484,71728623,71729118	0.937500
neural_cell	chr7	87040212	87040249	87040222	-	High_confidence	128	132	480	8.907759	6.105860	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86880015	87040227	MSTRG.19162.3	-	86880015,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,86947726,86964903,87039755	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,86947922,86965024,87040227	0.983333
neural_cell	chr15	80059908	80059919	80059918	+	High_confidence	97	114	266	4.936383	4.822000	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.988722
neural_cell	chr3	9363418	9363419	9363418	+	High_confidence	9	10	12	0.222694	3.095795	chr3	9363443	9363535	LINE|L2|L2b	+	chr3	9363097	9384870	THUMPD3|ENST00000515662.6	+	9363097,9365015,9366907,9371059,9374515,9377818,9380502,9383198,9384211,9384523	9363728,9365320,9366985,9371536,9374646,9377888,9380618,9383309,9384335,9384870	0.833333
neural_cell	chr8	101202439	101202459	101202458	-	High_confidence	3	3	9	0.167020	2.947703	chr8	101202158	101202485	SINE|Alu|AluSg7	+	chr8	101198936	101201657	ZNF706|ENST00000519103.1	-	101198936,101199989,101201606	101199239,101200123,101201657	1.000000
neural_cell	chr4	125358677	125358682	125358677	+	RAMPAGE_only	6	6	10	0.185578	3.169925	chr4	125358231	125358776	DNA|hAT-Charlie|MER1A	-	chr4	125393935	125491768	FAT4|ENST00000335110.5	+	125393935,125398783,125406879,125408443,125414883,125416447,125434244,125446298,125448460,125468511,125476170,125477154,125481520,125487344,125489900	125394004,125398915,125407141,125408794,125415806,125416622,125434425,125446543,125452810,125468819,125476256,125477393,125481738,125487606,125491768	0.700000
neural_cell	chr20	18794054	18794086	18794077	+	High_confidence	88	88	284	5.270424	6.187898	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.978873
neural_cell	chr22	27331560	27331645	27331573	+	High_confidence	3	3	31	0.575293	4.625054	chr22	27331341	27331854	LTR|ERVL|LTR33	-	chr22	27331786	27379265	AL020994.2|ENST00000413244.1	+	27331786,27335157,27336096,27379185	27331938,27335330,27336262,27379265	0.935484
neural_cell	chrX	104111937	104111974	104111973	+	High_confidence	11	11	32	0.593851	4.453881	chrX	104111941	104112155	SINE|MIR|MIRb	+	chrX	104112130	104112872	ZCCHC18|ENST00000423478.1	+	104112130,104112730	104112183,104112872	0.812500
neural_cell	chr16	72298624	72298650	72298649	-	RAMPAGE_only	5	5	21	0.389714	3.141446	chr16	72298437	72298828	LTR|ERVL-MaLR|MLT1A	-	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.904762
neural_cell	chr10	35428165	35428191	35428190	+	RAMPAGE_only	4	5	13	0.241252	3.546594	chr10	35428080	35428596	LINE|L2|L2b	-	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	1.000000
neural_cell	chr18	80147915	80147930	80147929	+	High_confidence	13	13	42	0.779429	4.850534	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80147923	80178432	PARD6G-AS1|NR_028340.1	+	80147923,80175879,80178085	80148254,80175935,80178432	0.642857
neural_cell	chr6	145735988	145736023	145736020	-	High_confidence	40	56	105	1.948572	5.465928	chr6	145735975	145736071	SINE|MIR|MIR3	+	chr6	145625303	145735855	EPM2A|NM_005670.3	-	145625303,145635244,145686121,145735197	145627693,145635486,145686296,145735855	0.847619
neural_cell	chr17	12069749	12069792	12069758	+	High_confidence	58	72	174	3.229063	5.976228	chr17	12069730	12069890	LINE|CR1|L3	+	chr17	12069755	12125350	MAP2K4|ENST00000579089.5	+	12069755,12095574,12107789,12110374,12113232,12125293	12069849,12095694,12107909,12110426,12113360,12125350	0.563218
neural_cell	chr22	32233184	32233195	32233194	-	RAMPAGE_only	5	5	11	0.204136	3.095795	chr22	32233138	32233397	LINE|L1|L1MA4	+	chr22	32218475	32255331	SLC5A4|NM_014227.2	-	32218475,32220919,32224266,32225654,32229193,32230967,32232898,32234872,32237243,32238984,32247410,32248742,32251769,32254141,32255194	32218725,32221022,32224482,32225823,32229344,32231075,32233034,32235093,32237324,32239090,32247515,32248802,32251874,32254213,32255331	1.000000
neural_cell	chr3	139689334	139689399	139689368	-	High_confidence	8	9	38	0.705198	4.333325	chr3	139689183	139689585	LTR|Gypsy?|LTR85c	+	chr3	139688402	139689342	AC110716.1|ENST00000506934.1	-	139688402,139689131	139688798,139689342	0.842105
neural_cell	chr22	39320287	39320340	39320328	-	High_confidence	9	11	65	1.206259	5.341373	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.984615
neural_cell	chr16	2205748	2205868	2205850	+	High_confidence	114	117	1097	20.357942	5.571908	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.976299
neural_cell	chr2	100011520	100011521	100011520	-	RAMPAGE_only	7	7	7	0.129905	2.521641	chr2	100011412	100011657	DNA|hAT-Tip100|MamTip2	+	chr2	100006148	100007951	AFF3|ENST00000498090.1	-	100006148,100007147	100007017,100007951	1.000000
neural_cell	chr16	81664281	81664295	81664292	+	RAMPAGE_only	13	13	43	0.797987	3.400096	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	1.000000
neural_cell	chr17	4143199	4143244	4143199	+	High_confidence	380	399	1387	25.739713	5.881225	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.981975
neural_cell	chr17	47067487	47067518	47067498	-	High_confidence	887	992	3843	71.317748	5.883512	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.933125
neural_cell	chr15	52569721	52569722	52569721	-	High_confidence	21	21	21	0.389714	4.070656	chr15	52569688	52569809	LINE|L2|L2	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	0.904762
neural_cell	chr12	95859544	95859560	95859544	+	High_confidence	8	8	14	0.259810	2.896292	chr12	95859414	95859977	LINE|L2|L2c	-	chr12	95858930	95866460	SNRPF|NM_003095.2	+	95858930,95861167,95865323,95866004	95859076,95861293,95865388,95866460	0.857143
neural_cell	chr7	100349740	100349767	100349766	+	RAMPAGE_only	5	5	15	0.278367	3.324863	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100338176	100350158	STAG3L5P|ENST00000493499.1	+	100338176,100338772,100345864,100349716	100338264,100338889,100345968,100350158	0.866667
neural_cell	chrX	45434835	45434849	45434835	+	RAMPAGE_only	3	3	10	0.185578	2.921928	chrX	45434802	45434872	LINE|L1|L1MDb	-	chrX	45505387	45527239	LINC01204|NR_104644.1	+	45505387,45510496,45521607,45524733	45505465,45510595,45521848,45527239	0.800000
neural_cell	chr21	32641904	32641916	32641904	-	High_confidence	5	5	9	0.167020	2.500000	chr21	32641733	32641912	SINE|MIR|MIR3	-	chr21	32631777	32641945	SYNJ1|ENST00000418301.3	-	32631777,32634860,32638907,32639670,32641895	32631801,32634881,32639125,32639779,32641945	0.888889
neural_cell	chr11	746720	746744	746720	+	High_confidence	4	4	20	0.371157	3.616349	chr11	746427	746778	LTR|ERV1|LTR8A	+	chr11	747328	765024	TALDO1|ENST00000319006.7	+	747328,755878,758949,760121,763343,763746,764287,764812	747578,756002,759057,760253,763519,763944,764433,765024	0.750000
neural_cell	chr1	147173712	147173722	147173712	-	RAMPAGE_only	7	7	17	0.315483	3.452820	chr1	147173692	147173819	DNA|hAT-Charlie|MER5A1	+	chr1	147155105	147172589	PRKAB2|NM_005399.4	-	147155105,147161711,147162439,147166497,147166845,147167766,147171988,147172428	147159642,147161780,147162573,147166618,147166939,147167933,147172167,147172589	0.882353
neural_cell	chr10	47743691	47743728	47743694	+	High_confidence	143	280	1151	21.360065	6.948462	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.860990
neural_cell	chr8	7138546	7138549	7138546	+	RAMPAGE_only	8	9	19	0.352599	3.636894	chr8	7138366	7138724	LTR|ERVL-MaLR|THE1B	+	chr8	7109286	7187316	AF228730.5|ENST00000649959.1	+	7109286,7112355,7119281,7152717,7186283	7109616,7112518,7119400,7152806,7187316	0.684211
neural_cell	chr3	193614856	193614857	193614856	+	High_confidence	5	5	8	0.148463	2.521641	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.875000
neural_cell	chr1	147173203	147173226	147173225	+	High_confidence	4	4	8	0.148463	3.000000	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.875000
neural_cell	chr5	116830184	116830187	116830186	-	High_confidence	31	38	55	1.020681	5.134336	chr5	116830073	116830291	LTR|ERVL|LTR33B	-	chr5	116820992	116830187	AC010267.1|ENST00000508636.1	-	116820992,116825528,116830124	116821137,116825873,116830187	0.509091
neural_cell	chr5	96934331	96934366	96934357	+	RAMPAGE_only	15	17	60	1.113470	4.818820	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.983333
neural_cell	chr3	43622933	43622958	43622933	-	High_confidence	6	7	18	0.334041	3.641604	chr3	43622864	43623165	SINE|Alu|AluSx	-	chr3	43365847	43622068	ANO10|ENST00000292246.7	-	43365847,43432610,43549719,43555277,43561219,43565652,43574808,43576691,43580352,43598531,43600383,43605713,43621908	43366974,43432727,43549848,43555469,43561402,43565727,43574864,43577261,43580472,43598666,43600581,43605863,43622068	0.888889
neural_cell	chr1	197561211	197561232	197561222	-	RAMPAGE_only	15	15	49	0.909334	4.802987	chr1	197560635	197561998	LINE|L2|L2a	+	chr1	197509643	197775307	DENND1B|ENST00000294737.11	-	197509643,197511727,197512870,197539963,197540958,197545921,197546732,197595207,197607072,197611930,197617658,197642710,197645689,197652234,197658299,197672036,197674119,197715030,197772867,197775138	197510972,197511944,197512953,197540071,197541015,197545990,197546773,197595333,197607174,197611976,197617759,197642821,197645743,197652315,197658369,197672156,197674169,197715074,197772932,197775307	0.755102
neural_cell	chr12	99506032	99506050	99506049	-	RAMPAGE_only	5	5	18	0.334041	3.572469	chr12	99505813	99506192	DNA|TcMar-Tigger|MER47B	-	chr12	98735421	99984237	ANKS1B|ENST00000547776.6	-	98735421,98751354,98773041,98781116,98782125,98798933,98800996,98829173,98832028,99053156,99084924,99154288,99244341,99246274,99399630,99443672,99504475,99655066,99772921,99775547,99779870,99782021,99806403,99812154,99825308,99984103	98735634,98751522,98773179,98781203,98782137,98799005,98801125,98829353,98832136,99053309,99085023,99154395,99244414,99246864,99399811,99443809,99504641,99655210,99773088,99775661,99779972,99782097,99806700,99812311,99825389,99984237	0.833333
neural_cell	chr19	57901656	57901657	57901656	-	RAMPAGE_only	11	11	12	0.222694	2.913977	chr19	57901134	57902661	LTR|ERVK|HERVK14-int	+	chr19	57850319	57888958	ZNF814|ENST00000597342.5	-	57850319,57876915,57885882,57888766	57850561,57877042,57885969,57888958	0.500000
neural_cell	chr10	99653827	99653828	99653827	-	RAMPAGE_only	16	16	16	0.296925	2.858459	chr10	99653591	99653844	LTR|Gypsy?|LTR85c	-	chr10	99651594	99659284	AL133353.1|ENST00000452391.2	-	99651594,99653824,99659144	99652210,99653905,99659284	1.000000
neural_cell	chr1	225544081	225544082	225544081	-	RAMPAGE_only	8	10	11	0.204136	2.921928	chr1	225544044	225544375	LINE|RTE-BovB|MamRTE1	+	chr1	225519043	225567270	ENAH|ENST00000497899.6	-	225519043,225530553,225554905,225567248	225519565,225530638,225555083,225567270	0.727273
neural_cell	chr3	31533442	31533463	31533442	+	High_confidence	3	3	9	0.167020	2.500000	chr3	31533377	31533564	LINE|L1|L1M4b	-	chr3	31533624	31617005	STT3B|ENST00000462235.5	+	31533624,31576395,31579808,31596797,31600359,31615104,31616928	31533686,31576504,31580096,31596863,31600459,31615203,31617005	0.888889
neural_cell	chr3	149752644	149752662	149752644	-	High_confidence	3	3	15	0.278367	3.378783	chr3	149752625	149752732	LINE|L2|L2a	-	chr3	149738469	149752499	COMMD2|ENST00000473414.5	-	149738469,149750677,149751402,149752209,149752377	149741718,149750851,149751485,149752287,149752499	0.800000
neural_cell	chr8	99892056	99892057	99892056	-	RAMPAGE_only	654	654	768	14.252415	4.903864	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.994792
neural_cell	chr1	161153539	161153543	161153542	+	High_confidence	3	3	8	0.148463	2.807355	chr1	161153494	161153649	LINE|L1|L1PA6	+	chr1	161153743	161158856	UFC1|NM_016406.3	+	161153743,161156949,161157253,161157616,161158120,161158411	161154120,161157017,161157317,161157693,161158211,161158856	0.875000
neural_cell	chr7	112633303	112633351	112633303	+	RAMPAGE_only	20	27	89	1.651647	5.304332	chr7	112633132	112633333	SINE|MIR|MIRb	-	chr7	112622380	112708072	LOC101928012|NR_110158.1	+	112622380,112632557,112635278,112635837,112640161,112699329,112701366,112707736	112622619,112632665,112635366,112635922,112640218,112699522,112701437,112708072	0.629213
neural_cell	chr7	93349178	93349210	93349209	+	High_confidence	6	8	14	0.259810	3.807355	chr7	93348983	93349605	LINE|L2|L2c	-	chr7	93349897	93356186	VPS50|ENST00000443443.1	+	93349897,93353639,93355890	93350033,93353761,93356186	0.714286
neural_cell	chr14	34462755	34462795	34462794	-	High_confidence	7	8	18	0.334041	3.614369	chr14	34462624	34462760	LINE|L2|L2a	-	chr14	34432788	34462356	SPTSSA|ENST00000298130.4	-	34432788,34462095	34435304,34462356	0.833333
neural_cell	chr7	82316742	82316750	82316742	-	RAMPAGE_only	2	3	7	0.129905	2.584963	chr7	82316624	82316978	LTR|ERVL-MaLR|THE1B	-	chr7	81950101	82443715	CACNA2D1|ENST00000356253.9	-	81950101,81959274,81959719,81961893,81962439,81964055,81964206,81965593,81967168,81967595,81968886,81969880,81970674,81971776,81974454,81982566,81984634,81991184,81994867,81997178,82001658,82005422,82005764,82007678,82012153,82013460,82014400,82032796,82038076,82060427,82064303,82066454,82084768,82117043,82136634,82170549,82335134,82349567,82443364	81950508,81959357,81959829,81962023,81962495,81964108,81964359,81965665,81967207,81967663,81968973,81969984,81970737,81971864,81974552,81982627,81984711,81991246,81994939,81997250,82001715,82005497,82005839,82007756,82012243,82013510,82014479,82032901,82038235,82060527,82064354,82066524,82084900,82117173,82136676,82170609,82335251,82349649,82443715	0.571429
neural_cell	chr2	11201309	11201318	11201309	-	RAMPAGE_only	2	3	7	0.129905	2.584963	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.857143
neural_cell	chr4	61517417	61517437	61517417	+	RAMPAGE_only	2	2	8	0.148463	3.000000	chr4	61517137	61518029	DNA|hAT-Charlie|Charlie17b	+	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.875000
neural_cell	chr3	121731431	121731462	121731461	-	RAMPAGE_only	11	12	34	0.630966	4.597276	chr3	121731351	121731515	SINE|Alu|AluSc8	-	chr3	121663202	121730216	MSTRG.15060.2	-	121663202,121664925,121667475,121668060,121669211,121676892,121677284,121681686,121690669,121693740,121699811,121702480,121714860,121716736,121718387,121726912,121729187,121729864	121664614,121665031,121667610,121668158,121669355,121677030,121677450,121681865,121692581,121698929,121699885,121702595,121714976,121717139,121722378,121727041,121729340,121730216	0.676471
neural_cell	chr11	72111493	72111497	72111496	-	High_confidence	9	11	15	0.278367	3.906891	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72108817	72111497	ANAPC15|ENST00000538117.5	-	72108817,72109228,72110087,72110543,72111156,72111411	72108875,72109341,72110225,72110603,72111281,72111497	0.733333
neural_cell	chr4	88595606	88595607	88595606	+	RAMPAGE_only	4	4	6	0.111347	2.584963	chr4	88595552	88595664	SINE|MIR|MIR3	+	chr4	88593377	88653088	HERC3|ENST00000452979.5	+	88593377,88595556,88605794,88649839,88652011,88652868	88593494,88595614,88606049,88649999,88652088,88653088	1.000000
neural_cell	chr22	50757035	50757082	50757041	+	High_confidence	4	6	20	0.371157	3.884184	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.550000
neural_cell	chr6	3195772	3195783	3195772	-	High_confidence	35	35	81	1.503184	4.689334	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.950617
neural_cell	chr1	42479915	42479940	42479915	+	RAMPAGE_only	11	15	38	0.705198	4.350209	chr1	42479611	42480103	LTR|ERVL|LTR53B	-	chr1	42482655	42654181	CCDC30|ENST00000428554.6	+	42482655,42490157,42497097,42498817,42534888,42536475,42539172,42545409,42556155,42566295,42577019,42581359,42589320,42610977,42637236,42642472,42644692,42646134,42653375,42653817	42482816,42490229,42497213,42498916,42534989,42536601,42539310,42545579,42556405,42566475,42577229,42581514,42589483,42611090,42637378,42642609,42644807,42646317,42653443,42654181	0.763158
neural_cell	chr6	88147785	88147788	88147787	-	RAMPAGE_only	7	9	12	0.222694	2.594907	chr6	88147611	88147801	LINE|L2|L2c	+	chr6	88143243	88145365	CNR1|ENST00000549890.1	-	88143243	88145365	0.833333
neural_cell	chr1	205422055	205422056	205422055	-	High_confidence	13	13	16	0.296925	3.506891	chr1	205421923	205422209	DNA|DNA|UCON78	-	chr1	205381377	205422054	LEMD1|ENST00000367153.8	-	205381377,205384287,205416231,205419229,205420454,205421989	205381856,205384364,205416296,205419352,205420574,205422054	0.500000
neural_cell	chr22	27331703	27331790	27331786	+	High_confidence	11	11	37	0.686640	4.864727	chr22	27331341	27331854	LTR|ERVL|LTR33	-	chr22	27331786	27379265	AL020994.2|ENST00000413244.1	+	27331786,27335157,27336096,27379185	27331938,27335330,27336262,27379265	0.945946
neural_cell	chr1	15758205	15758212	15758211	+	High_confidence	5	5	11	0.204136	3.277613	chr1	15758111	15758311	SINE|MIR|MIRb	-	chr1	15758418	15786594	FBLIM1|ENST00000375766.7	+	15758418,15764495,15764963,15767375,15768527,15770408,15774617,15777169,15784547	15758848,15764685,15765233,15767563,15768630,15770578,15774796,15777287,15786594	1.000000
neural_cell	chr3	129837362	129837388	129837362	-	RAMPAGE_only	24	31	82	1.521742	5.626442	chr3	129837184	129838128	LINE|L1|L1MCa	+	chr3	129647791	129880466	TMCC1|ENST00000393238.7	-	129647791,129654967,129670329,129827802,129832773,129880308	129651795,129655103,129671264,129828508,129832826,129880466	0.756098
neural_cell	chr1	6208681	6208682	6208681	-	High_confidence	20	21	21	0.389714	3.028213	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.904762
neural_cell	chr4	61517472	61517488	61517487	+	RAMPAGE_only	5	7	11	0.204136	3.459432	chr4	61517137	61518029	DNA|hAT-Charlie|Charlie17b	+	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.818182
neural_cell	chr3	183116064	183116075	183116064	-	High_confidence	5	6	13	0.241252	3.418296	chr3	183115868	183116225	LTR|ERV1|MER51E	-	chr3	183015217	183116075	MCCC1|ENST00000492597.5	-	183015217,183017265,183020129,183022416,183025754,183033990,183037217,183039025,183041566,183045412,183052158,183057310,183070998,183071209,183072365,183086692,183094558,183115473	183015566,183017337,183020237,183022554,183025804,183034077,183037434,183039135,183041750,183045540,183052240,183057422,183071120,183071357,183072487,183086788,183094605,183116075	0.923077
neural_cell	chr13	37001102	37001112	37001111	+	High_confidence	6	7	12	0.222694	3.277613	chr13	37001127	37001406	SINE|Alu|AluSx1	+	chr13	37000785	37008785	EXOSC8|ENST00000474661.5	+	37000785,37001748,37002272,37002487,37002933,37004515,37005919,37006114,37006974,37008056,37008728	37000822,37001801,37002309,37002551,37003007,37004561,37006025,37006160,37007071,37008177,37008785	0.666667
neural_cell	chrX	54920461	54920540	54920539	+	High_confidence	5	7	44	0.816545	4.925119	chrX	54920421	54920568	LINE|L2|L2c	-	chrX	54920562	54922877	TRO|ENST00000452830.5	+	54920562,54922217	54920878,54922877	1.000000
neural_cell	chr1	28681084	28681085	28681084	+	RAMPAGE_only	26	26	27	0.501061	4.392747	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	0.851852
neural_cell	chr3	16802614	16802669	16802650	+	High_confidence	12	12	48	0.890776	4.325314	chr3	16802617	16802736	SINE|MIR|MIRb	-	chr3	16802650	17011084	PLCL2|ENST00000460467.1	+	16802650,17009673,17010904	16803088,17010086,17011084	0.916667
neural_cell	chr4	158173024	158173025	158173024	-	High_confidence	8	8	9	0.167020	2.750000	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.888889
neural_cell	chr7	26428870	26428871	26428870	+	RAMPAGE_only	13	13	13	0.241252	3.334679	chr7	26428680	26429055	LTR|ERVL-MaLR|THE1C	+	chr7	26440258	26494114	AC004540.1|ENST00000448056.1	+	26440258,26493794	26440505,26494114	0.846154
neural_cell	chr15	75626279	75626305	75626304	-	High_confidence	46	52	85	1.577416	4.213788	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.976471
neural_cell	chr3	117539715	117539727	117539726	-	RAMPAGE_only	4	4	12	0.222694	2.663533	chr3	117539423	117539795	LINE|L2|L2c	+	chr3	117450512	117997592	MSTRG.15032.23	-	117450512,117997181	117729179,117997592	0.583333
neural_cell	chr18	41632277	41632299	41632298	-	High_confidence	3	3	11	0.204136	3.277613	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41521337	41632124	KC6|ENST00000599934.1	-	41521337,41525354,41564798,41631999	41521496,41525526,41564898,41632124	0.727273
neural_cell	chr11	64226142	64226203	64226158	-	High_confidence	103	105	631	11.709992	7.542952	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.961965
neural_cell	chr11	75979592	75979636	75979604	+	High_confidence	38	38	200	3.711566	5.193382	chr11	75974665	75980018	LINE|L1|L1PA6	-	chr11	75979525	76142651	UVRAG|ENST00000531818.5	+	75979525,75983386,76004004,76007533,76008806,76016814,76065709,76115923,76140710	75980038,75983513,76004089,76007621,76008867,76016980,76065788,76116015,76142651	1.000000
neural_cell	chr1	113759884	113759899	113759898	-	High_confidence	14	16	32	0.593851	3.731520	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.750000
neural_cell	chr20	36091413	36091521	36091520	+	High_confidence	7	7	63	1.169143	4.990092	chr20	36091562	36091597	SINE|MIR|MIRc	+	chr20	36091503	36230341	EPB41L1|ENST00000202028.9	+	36091503,36112425,36175550,36177951,36178629,36182271,36185116,36187675,36188346,36190276,36190621,36194211,36197858,36209487,36212271,36218875,36219760,36221863,36222277,36229331	36091612,36112480,36175715,36178056,36178672,36182347,36185335,36187763,36188499,36190374,36190797,36194360,36198041,36209898,36212376,36218962,36219844,36221944,36222394,36230341	0.730159
neural_cell	chr11	3380960	3380961	3380960	+	High_confidence	127	132	138	2.560981	6.112823	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.688406
neural_cell	chr2	71417118	71417126	71417125	+	RAMPAGE_only	3	3	7	0.129905	2.521641	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71416102	71435052	MSTRG.12052.24	+	71416102,71424649,71426459,71428546,71433164	71424038,71424715,71427414,71431428,71435052	1.000000
neural_cell	chr15	81995543	81995585	81995553	-	High_confidence	10	10	43	0.797987	4.642085	chr15	81995166	82000000	LINE|L1|L1HS	+	chr15	81953302	81995666	AC025219.1|ENST00000559299.1	-	81953302,81954388,81995426	81953507,81954469,81995666	0.511628
neural_cell	chr1	25820173	25820216	25820192	+	High_confidence	15	15	92	1.707321	4.994355	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.826087
neural_cell	chr1	42959478	42959496	42959478	+	High_confidence	7	8	13	0.241252	3.392747	chr1	42959490	42959595	LINE|L2|L2c	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.692308
neural_cell	chr11	72111411	72111433	72111411	-	High_confidence	11	13	22	0.408272	3.984184	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72107158	72111443	ANAPC15|ENST00000543050.5	-	72107158,72110087,72110543,72111156,72111411	72107605,72110225,72110603,72111286,72111443	0.500000
neural_cell	chr4	48907235	48907256	48907235	-	High_confidence	5	5	27	0.501061	4.310443	chr4	48907159	48907231	SINE|MIR|MIRb	-	chr4	48885381	48906937	OCIAD2|ENST00000508069.6	-	48885381,48892771,48894005,48897803,48904483,48906657	48885565,48892889,48894053,48897857,48904611,48906937	1.000000
neural_cell	chr8	74350010	74350033	74350017	-	High_confidence	8	8	34	0.630966	4.449699	chr8	74349865	74349977	LINE|L1|L1MC4	-	chr8	74347756	74350050	AC103952.1|ENST00000521872.1	-	74347756,74349909	74348205,74350050	0.705882
neural_cell	chr2	27111101	27111102	27111101	-	RAMPAGE_only	9	9	11	0.204136	3.459432	chr2	27110684	27112017	LTR|ERV1|LTR12C	-	chr2	27101112	27119030	CGREF1|ENST00000312734.8	-	27101112,27102096,27102359,27102525,27104286,27110672,27118845	27101888,27102221,27102430,27102591,27104377,27110968,27119030	1.000000
neural_cell	chr3	151085144	151085173	151085159	+	High_confidence	6	8	24	0.445388	3.317640	chr3	151085004	151085190	SINE|MIR|MIRb	+	chr3	151085307	151433742	MSTRG.15297.1	+	151085307,151086797,151116337,151122782,151127824,151156160,151158688,151165419,151165845,151185329,151188353,151190716,151193489,151350058,151355120,151355895,151357212,151360473,151364978,151365849,151367645,151368149,151369435,151372566,151376025,151376799,151376990,151378011,151380112,151382655,151383778,151384082,151385029,151387809,151389978,151394655,151430298,151432751	151085414,151087025,151116442,151122974,151127984,151156330,151158799,151165519,151165982,151185461,151188480,151190931,151193666,151350206,151355239,151356039,151357376,151360605,151365206,151365991,151367766,151368251,151369549,151372766,151376214,151376874,151377178,151378173,151380224,151382745,151383888,151384218,151385191,151388172,151390135,151394867,151430380,151433742	0.916667
neural_cell	chr21	15395314	15395338	15395337	-	RAMPAGE_only	5	5	28	0.519619	4.469670	chr21	15394804	15395650	LINE|L1|L1MC4a	+	chr21	15370521	15402305	AJ009632.2|ENST00000449602.1	-	15370521,15390577,15394472,15394999,15395462,15400497,15401987	15370911,15390618,15394506,15395129,15395497,15400549,15402305	0.821429
neural_cell	chr10	93701899	93701959	93701940	-	High_confidence	6	8	29	0.538177	4.090234	chr10	93701798	93702029	SINE|MIR|MIR	+	chr10	93667882	93702572	FRA10AC1|ENST00000359204.4	-	93667882,93670769,93676652,93681479,93684055,93685245,93687403,93692008,93692645,93694860,93698135,93698300,93700029,93702374	93669868,93670848,93676691,93681598,93684098,93685359,93687449,93692093,93692729,93694937,93698181,93698396,93700106,93702572	0.689655
neural_cell	chr17	42980395	42980480	42980395	-	High_confidence	23	27	214	3.971376	6.336488	chr17	42980326	42980440	LINE|L2|L2a	+	chr17	42968103	42980433	PTGES3L|ENST00000409446.7	-	42968103,42970288,42971606,42979169,42979377,42980045	42969186,42970342,42971696,42979268,42979444,42980433	0.546729
neural_cell	chr5	160199150	160199156	160199155	+	High_confidence	62	84	134	2.486749	4.640160	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.985075
neural_cell	chr16	4355592	4355593	4355592	-	High_confidence	441	451	451	8.369582	5.595331	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.964523
neural_cell	chr4	4542731	4542743	4542731	-	High_confidence	4	4	12	0.222694	3.459432	chr4	4542688	4542779	LINE|L2|L2c	-	chr4	4425172	4542346	STX18|ENST00000507908.5	-	4425172,4434769,4438393,4457190,4457422,4459371,4471638,4542159	4425222,4434858,4438509,4457257,4457500,4459487,4471706,4542346	0.750000
neural_cell	chr2	10324323	10324347	10324327	+	High_confidence	3	3	13	0.241252	3.546594	chr2	10324377	10324492	SINE|MIR|MIRb	+	chr2	10324346	10427352	HPCAL1|ENST00000419810.6	+	10324346,10354215,10396834,10408561,10419733,10422982,10426219,10426723	10324396,10354381,10396920,10408734,10420135,10425981,10426495,10427352	0.923077
neural_cell	chr3	53495039	53495056	53495039	+	High_confidence	8	9	25	0.463946	3.573935	chr3	53495032	53495170	LINE|L2|L2a	+	chr3	53495048	53812465	CACNA1D|NM_000720.3	+	53495048,53497151,53501614,53650778,53660132,53665659,53666338,53673712,53702640,53718300,53718681,53719754,53722313,53723433,53723791,53726878,53730441,53731076,53732015,53732814,53735373,53740279,53743010,53744739,53745623,53745822,53747301,53749267,53751748,53753571,53761997,53769972,53770423,53772832,53774586,53775885,53776602,53776859,53780025,53781565,53786821,53800248,53801057,53802146,53803422,53804982,53808648,53809977,53811112	53495233,53497461,53501720,53650918,53660275,53665812,53666535,53673816,53702810,53718388,53718741,53719781,53722474,53723659,53723999,53726999,53730556,53731146,53732082,53732962,53735503,53740339,53743117,53744827,53745731,53745875,53747448,53749469,53751907,53753682,53762081,53770017,53770552,53772898,53774678,53776045,53776730,53776956,53780128,53781667,53786952,53800365,53801425,53802173,53803572,53805146,53808770,53810298,53812465	0.960000
neural_cell	chr6	117532090	117532106	117532090	+	RAMPAGE_only	2	2	7	0.129905	2.584963	chr6	117532079	117532182	LTR|ERVL-MaLR|MLT1H2	-	chr6	117538774	117547928	DCBLD1|ENST00000424717.6	+	117538774,117539254,117540917,117543123,117544527,117545477,117547906	117538835,117539379,117541025,117543211,117544577,117545597,117547928	0.714286
neural_cell	chr19	52169668	52169679	52169678	-	High_confidence	3	3	8	0.148463	2.807355	chr19	52169654	52169811	SINE|Alu|AluJb	+	chr19	52157365	52170386	ZNF836|ENST00000596428.5	-	52157365,52160464,52168057,52169647,52170359	52157540,52160591,52168152,52169781,52170386	0.875000
neural_cell	chr5	32403145	32403158	32403145	-	RAMPAGE_only	3	3	9	0.167020	2.750000	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.888889
neural_cell	chr5	16737787	16737805	16737787	-	High_confidence	2	3	13	0.241252	3.546594	chr5	16737673	16737879	DNA|hAT-Charlie|MER20	+	chr5	16666379	16738414	MYO10|ENST00000515803.5	-	16666379,16668276,16670525,16671421,16672688,16673681,16674852,16676030,16679946,16681308,16681870,16683879,16685737,16689823,16694370,16699449,16700962,16702542,16702924,16704578,16710907,16711120,16738135	16666793,16668468,16670978,16671542,16672825,16673889,16675150,16676154,16680104,16681503,16682013,16683935,16685831,16689919,16694614,16699573,16701838,16702588,16703158,16704685,16711022,16711245,16738414	0.692308
neural_cell	chr11	64285045	64285066	64285065	+	High_confidence	2	3	6	0.111347	2.584963	chr11	64284960	64285124	SINE|MIR|MIRb	+	chr11	64285056	64288090	GPR137|ENST00000539833.5	+	64285056,64286509,64286964,64287720,64288064	64285380,64286881,64287014,64287946,64288090	1.000000
neural_cell	chr5	78388844	78388896	78388844	+	RAMPAGE_only	5	5	22	0.408272	4.061482	chr5	78388798	78388903	LINE|CR1|L3	-	chr5	78416602	78478815	SCAMP1|ENST00000320280.8	+	78416602,78418774,78421800,78459244,78475503	78416649,78418903,78421960,78459362,78478815	0.590909
neural_cell	chr5	75336514	75336518	75336514	+	High_confidence	3	3	9	0.167020	3.000000	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.555556
neural_cell	chr12	19436598	19436599	19436598	+	RAMPAGE_only	6	6	6	0.111347	2.584963	chr12	19436567	19436899	SINE|Alu|AluJb	-	chr12	19439673	19522239	AEBP2|ENST00000398864.7	+	19439673,19462509,19473247,19493799,19500096,19512397,19514670,19518086,19518674	19440370,19462717,19473355,19493986,19500221,19512465,19514784,19518113,19522239	1.000000
neural_cell	chr12	95003222	95003260	95003259	-	High_confidence	5	5	16	0.296925	2.872906	chr12	95003195	95003316	SINE|MIR|MIR3	-	chr12	94971332	95003608	NDUFA12|ENST00000551991.5	-	94971332,94994169,94996903,95002738,95003594	94971620,94994257,94996976,95002821,95003608	0.937500
neural_cell	chr14	40954516	40954558	40954547	+	High_confidence	29	32	112	2.078477	4.994339	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954710	41141048	LOC644919|NR_109758.1	+	40954710,40962789,40974339,41140833	40954952,40962842,40974390,41141048	0.866071
neural_cell	chr2	1997210	1997252	1997251	-	RAMPAGE_only	3	3	19	0.352599	4.169925	chr2	1997219	1997369	SINE|MIR|MIRb	+	chr2	1789147	1979220	MYT1L|ENST00000650399.1	-	1789147,1792320,1801695,1809075,1839148,1840759,1851640,1886538,1887487,1889240,1892036,1942981,1979164	1792007,1792464,1801799,1809167,1839370,1840843,1851703,1886607,1887609,1889477,1892287,1943334,1979220	0.789474
neural_cell	chr12	123390748	123390762	123390748	+	High_confidence	3	3	12	0.222694	3.459432	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.750000
neural_cell	chr1	212792331	212792367	212792366	-	High_confidence	5	5	17	0.315483	3.616875	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.823529
neural_cell	chr16	19717864	19717873	19717864	-	High_confidence	4	4	8	0.148463	2.807355	chr16	19717752	19717834	SINE|MIR|MIRb	-	chr16	19714798	19718131	KNOP1|ENST00000564480.1	-	19714798,19717350	19715037,19718131	0.875000
neural_cell	chrX	1744481	1744489	1744488	+	RAMPAGE_only	5	6	14	0.259810	3.807355	chrX	1744336	1744657	LTR|ERVL-MaLR|THE1B	+	chrX	1734116	1763212	AL683807.1|ENST00000432272.7	+	1734116,1755683,1762958	1734196,1755985,1763212	0.500000
neural_cell	chr12	6582139	6582140	6582139	-	High_confidence	4	4	6	0.111347	2.584963	chr12	6581880	6582102	SINE|Alu|AluSx1	-	chr12	6570190	6581343	CHD4|ENST00000644652.1	-	6570190,6570868,6573073,6577784,6578028,6578408,6578845,6580581,6581043,6581290	6570693,6571032,6573269,6577917,6578137,6578546,6578917,6580699,6581173,6581343	0.666667
neural_cell	chr6	21502441	21502514	21502512	-	RAMPAGE_only	6	10	28	0.519619	3.896292	chr6	21502478	21502886	LTR|ERVL-MaLR|MLT1I	+	chr6	21486060	21511892	LINC00581|NR_103790.1	-	21486060,21490207,21502441,21511535	21486529,21490298,21502511,21511892	0.928571
neural_cell	chr20	3795750	3795789	3795759	+	High_confidence	8	8	60	1.113470	5.015061	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
neural_cell	chr4	105145874	105145907	105145906	+	High_confidence	3	3	17	0.315483	3.969816	chr4	105145828	105145941	DNA|TcMar-Tigger|Tigger19b	+	chr4	105145874	105242771	TET2|ENST00000305737.6	+	105145874,105190359,105233896	105146086,105190505,105242771	1.000000
neural_cell	chr7	113910064	113910075	113910073	-	RAMPAGE_only	5	9	20	0.371157	4.121928	chr7	113909901	113910254	LTR|ERVL-MaLR|THE1B	-	chr7	113879770	113918996	PPP1R3A|ENST00000284602.1	-	113879770,113882038,113882261,113918214,113918818	113880125,113882163,113882320,113918297,113918996	0.800000
neural_cell	chr4	99906521	99906548	99906545	-	High_confidence	5	5	26	0.482504	4.085055	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	1.000000
neural_cell	chr4	6382559	6382582	6382581	-	RAMPAGE_only	5	5	15	0.278367	3.773557	chr4	6382510	6382622	LINE|L2|L2a	+	chr4	6333645	6384826	PPP2R2C|ENST00000513943.5	-	6333645,6347845,6372522,6375818,6378406,6380996	6333731,6348010,6372700,6375931,6378572,6384826	1.000000
neural_cell	chr19	39485759	39485803	39485802	+	High_confidence	4	5	13	0.241252	3.334679	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	1.000000
neural_cell	chr2	240022252	240022280	240022252	-	RAMPAGE_only	4	4	12	0.222694	2.751629	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
neural_cell	chr5	31530835	31530913	31530864	-	RAMPAGE_only	9	12	48	0.890776	4.615602	chr5	31530667	31530954	LINE|L2|L2c	+	chr5	31400496	31532061	DROSHA|ENST00000511367.6	-	31400496,31405676,31406852,31409055,31409249,31410745,31421271,31422786,31424426,31429474,31431575,31435764,31437238,31448546,31449280,31451532,31464235,31466181,31467938,31472062,31483553,31484880,31486490,31493206,31495285,31504554,31508620,31511034,31514987,31515453,31521122,31526078,31529039,31530797,31531989	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31422944,31424471,31429545,31431678,31435864,31437298,31448607,31449419,31451640,31464343,31466281,31468063,31472232,31483628,31484962,31486562,31493293,31495372,31504635,31508775,31511176,31515219,31515564,31521215,31526912,31529105,31530924,31532061	0.979167
neural_cell	chr7	130518104	130518192	130518166	+	RAMPAGE_only	27	27	105	1.948572	5.464744	chr7	130518046	130518269	LINE|L1|L1ME3Cz	+	chr7	130513359	130531047	MSTRG.19511.1	+	130513359,130528150	130524731,130531047	1.000000
neural_cell	chr2	6918666	6918680	6918679	-	High_confidence	43	43	94	1.744436	5.487199	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.744681
neural_cell	chr10	74960794	74960795	74960794	+	RAMPAGE_only	9	9	9	0.167020	2.725481	chr10	74960610	74960848	SINE|MIR|MIRb	+	chr10	74842619	75022125	KAT6B|ENST00000648369.1	+	74842619,74959969,74969659,74970019,74972506,74975398,74977315,74979223,74981786,74985079,75020581,75021125,75021880	74843478,74960078,74969775,74970101,74972639,74976330,74977437,74979339,74981928,74985241,75020813,75021285,75022125	1.000000
neural_cell	chr3	124693821	124693822	124693821	+	RAMPAGE_only	5	6	6	0.111347	2.584963	chr3	124693862	124694030	LINE|L1|L1ME4b	+	chr3	124584658	124726325	KALRN|ENST00000291478.9	+	124584658,124632419,124633848,124637207,124650807,124655600,124657447,124657733,124658430,124659364,124660922,124661850,124666448,124667011,124671659,124674360,124678189,124679457,124693803,124694331,124696133,124697592,124699868,124702037,124712934,124717246,124718924	124584906,124632703,124633953,124637303,124650938,124655667,124657551,124657803,124658517,124659457,124660973,124661928,124666634,124667183,124671898,124674614,124678313,124679517,124693831,124694503,124696255,124697724,124700033,124702116,124713135,124717385,124726325	1.000000
neural_cell	chr1	1853298	1853299	1853298	-	RAMPAGE_only	10	11	13	0.241252	2.968919	chr1	1853117	1853370	LINE|L2|L2b	+	chr1	1804525	1832285	GNB1|ENST00000437146.1	-	1804525,1806474,1815755,1817836,1825396,1832231	1804581,1806538,1815862,1817875,1825499,1832285	0.846154
neural_cell	chr15	93073606	93073625	93073606	-	High_confidence	4	5	10	0.185578	3.121928	chr15	93073539	93073593	DNA|hAT-Tip100?|MamRep1879	-	chr15	93044955	93073663	RGMA|ENST00000556658.1	-	93044955,93051992,93065831,93072915,93073583	93045705,93052507,93066259,93073031,93073663	0.500000
neural_cell	chr1	212792544	212792564	212792544	-	High_confidence	2	2	9	0.167020	2.947703	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.777778
neural_cell	chr18	7946875	7946898	7946878	+	High_confidence	781	787	2319	43.035612	5.752122	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8406666	MSTRG.9940.6	+	7946869,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8122241,8143646,8244057,8247844,8296367,8314780,8319177,8343422,8370889,8376045,8376461,8379166,8380295,8384560,8387071,8394475,8406108	7946977,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8122316,8143779,8244209,8247919,8296455,8314857,8319214,8343520,8371006,8376200,8378414,8379340,8380427,8384686,8387235,8394611,8406666	0.988788
neural_cell	chr12	55516318	55516319	55516318	+	RAMPAGE_only	6	6	6	0.111347	2.584963	chr12	55515725	55517184	LINE|L1|L1M1	+	chr12	56158160	56161574	MYL6|ENST00000550697.5	+	56158160,56158683,56159586,56159974,56160242,56160625,56161386	56158404,56158711,56159730,56160148,56160320,56160670,56161574	0.833333
neural_cell	chr6	26956526	26956599	26956544	-	High_confidence	29	30	68	1.261933	5.172186	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.882353
neural_cell	chr3	217363	217364	217363	+	High_confidence	7	8	10	0.185578	3.169925	chr3	217318	217820	LINE|L2|L2a	-	chr3	217534	328223	CHL1|ENST00000449294.6	+	217534,244612,319682,325958,328166	217700,244692,319867,326064,328223	0.800000
neural_cell	chr22	50757247	50757248	50757247	+	High_confidence	11	11	17	0.315483	3.734522	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.529412
neural_cell	chr2	240821489	240821520	240821489	-	High_confidence	6	6	17	0.315483	3.572469	chr2	240821448	240821704	LINE|L1|L1M5	-	chr2	240716975	240821036	KIF1A|ENST00000650130.1	-	240716975,240718049,240719005,240719773,240720913,240721806,240722455,240723412,240723974,240725270,240726825,240737062,240740057,240740297,240741268,240742928,240743941,240745426,240745737,240746038,240747235,240750428,240757318,240758359,240760664,240761228,240762718,240763018,240763165,240765709,240766914,240767265,240769132,240769626,240770970,240773113,240774182,240775850,240782589,240783043,240783738,240784988,240786334,240787250,240788050,240789235,240797646,240820915	240717406,240718168,240719198,240719926,240721038,240721884,240722656,240723558,240724036,240725404,240726940,240737168,240740142,240740364,240741377,240742984,240744060,240745517,240745909,240746177,240747321,240750547,240757594,240758497,240760843,240761377,240762812,240763091,240763346,240765793,240767021,240767345,240769208,240769706,240771104,240773256,240774261,240775926,240782607,240783109,240783816,240785100,240786513,240787316,240788230,240789312,240797812,240821036	0.882353
neural_cell	chr14	91462175	91462195	91462194	-	High_confidence	4	5	9	0.167020	2.947703	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	1.000000
neural_cell	chr14	81427172	81427179	81427178	-	High_confidence	5	6	10	0.185578	2.646439	chr14	81426946	81427161	SINE|MIR|MIR	-	chr14	81260649	81427212	STON2|NM_033104.3	-	81260649,81276900,81370987,81395893,81398294,81427101	81270872,81278739,81371185,81396178,81398580,81427212	0.900000
neural_cell	chr4	170089309	170089515	170089451	-	High_confidence	39	39	405	7.515922	6.614921	chr4	170089443	170089514	LINE|L2|L2b	+	chr4	170070618	170089394	AADAT|ENST00000510340.5	-	170070618,170073135,170078508,170087115,170088395,170089260	170070652,170073345,170078583,170087248,170088564,170089394	0.950617
neural_cell	chr19	34860381	34860424	34860423	-	RAMPAGE_only	11	11	48	0.890776	4.762267	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34816153	34832869	LOC400685|NR_033982.1	-	34816153,34818586,34829163,34830405,34832329,34832724	34817490,34818766,34829253,34830526,34832536,34832869	0.833333
neural_cell	chr22	43326888	43326913	43326891	-	RAMPAGE_only	10	10	32	0.593851	4.567100	chr22	43326707	43327055	LINE|L2|L2b	+	chr22	43203991	43343283	SCUBE1|ENST00000615096.4	-	43203991,43229115,43231752,43238837,43258218,43262719,43291045,43319936,43339103,43343173	43204048,43229188,43231875,43238954,43258335,43262845,43291180,43320065,43339235,43343283	0.906250
neural_cell	chr17	7704713	7704748	7704733	+	High_confidence	9	13	33	0.612408	3.655336	chr17	7704566	7704803	SINE|MIR|MIRc	+	chr17	7705201	7711375	EFNB3|NM_001406.3	+	7705201,7707957,7708434,7708634,7709166	7705720,7708250,7708527,7708739,7711375	0.909091
neural_cell	chr4	173369507	173369529	173369526	-	High_confidence	2	3	8	0.148463	2.521641	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.500000
neural_cell	chr1	6200595	6200658	6200657	-	High_confidence	15	18	77	1.428953	4.005564	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.974026
neural_cell	chr3	158370484	158370518	158370517	+	RAMPAGE_only	7	9	41	0.760871	4.753774	chr3	158370259	158371242	LINE|L1|L1ME1	-	chr3	158203071	158543687	RSRC1|ENST00000482822.2	+	158203071,158298038,158354856,158460934,158537091,158543334	158203245,158298075,158354908,158461003,158537198,158543687	0.902439
neural_cell	chr3	130233175	130233253	130233182	+	RAMPAGE_only	19	19	71	1.317606	5.392361	chr3	130233162	130233211	DNA|hAT-Charlie|MER5A	-	chr3	130214229	130245843	COL6A4P2|ENST00000507516.3	+	130214229,130215671,130218268,130221376,130221788,130228015,130228186,130233445,130234586,130235159,130237518,130244290,130244430,130245772	130214242,130215713,130218322,130221439,130221854,130228069,130228222,130233508,130234649,130235222,130237569,130244326,130244493,130245843	0.873239
neural_cell	chr12	8788249	8788253	8788252	+	High_confidence	6	7	11	0.204136	3.459432	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	1.000000
neural_cell	chr7	87039786	87039870	87039869	-	High_confidence	38	40	228	4.231186	6.788932	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86880015	87040227	MSTRG.19162.3	-	86880015,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,86947726,86964903,87039755	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,86947922,86965024,87040227	0.868421
neural_cell	chrX	70453672	70453689	70453672	+	RAMPAGE_only	9	10	22	0.408272	4.011365	chrX	70453648	70453712	DNA|hAT-Ac|OldhAT1	+	chrX	70452304	70505487	DLG3|ENST00000374355.7	+	70452304,70453636,70454213,70479149,70492106,70492520,70493375,70497179,70498519,70499175,70499876,70500470,70500897,70502162	70452755,70453793,70454316,70479264,70492283,70492596,70493475,70497221,70498570,70499277,70500049,70500580,70500989,70505487	0.863636
neural_cell	chr22	50326342	50326367	50326363	+	RAMPAGE_only	7	7	29	0.538177	4.487123	chr22	50326357	50326591	LINE|L2|L2	-	chr22	50343303	50445090	PPP6R2|ENST00000359139.7	+	50343303,50372019,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439697,50439960,50440821,50443865,50444202	50343550,50372150,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50445090	0.689655
neural_cell	chr15	34988766	34988792	34988784	-	High_confidence	4	6	21	0.389714	4.037401	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.523810
neural_cell	chr2	153871897	153871922	153871921	+	High_confidence	7	7	36	0.668082	4.089101	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.944444
neural_cell	chr7	103353922	103353931	103353922	+	High_confidence	3	3	8	0.148463	2.750000	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	1.000000
neural_cell	chr19	5680240	5680261	5680240	-	High_confidence	14	14	49	0.909334	4.985336	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.938776
neural_cell	chr2	6866488	6866553	6866552	-	High_confidence	22	22	137	2.542423	5.449871	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.824818
neural_cell	chr14	81192654	81192670	81192654	-	RAMPAGE_only	8	8	19	0.352599	3.794653	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.947368
neural_cell	chr20	47500867	47500900	47500899	+	High_confidence	8	10	26	0.482504	3.300195	chr20	47500403	47500991	LINE|L2|L2a	-	chr20	47501856	47656877	NCOA3|NM_006534.3	+	47501856,47583182,47622228,47623910,47625380,47627001,47627560,47627921,47633495,47634047,47635321,47635890,47637647,47639007,47639576,47639924,47642212,47647072,47649004,47650981,47652405,47652930,47653405	47502019,47583261,47622330,47624083,47625481,47627176,47627749,47628023,47633636,47634195,47635713,47636762,47637783,47639202,47639822,47640051,47642384,47647366,47649097,47651276,47652580,47653072,47656877	1.000000
neural_cell	chr1	116390278	116390290	116390289	+	RAMPAGE_only	2	2	7	0.129905	2.584963	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.857143
neural_cell	chr11	61949792	61949821	61949820	+	High_confidence	41	45	172	3.191947	4.928704	chr11	61949804	61949945	SINE|MIR|MIR3	-	chr11	61949820	61964461	BEST1|ENST00000378043.8	+	61949820,61951770,61955106,61955717,61956843,61957386,61958145,61959497,61959891,61962254,61964103	61950427,61951958,61955201,61955951,61956998,61957464,61958298,61959578,61960043,61962893,61964461	0.959302
neural_cell	chr11	75607227	75607269	75607233	-	RAMPAGE_only	13	13	25	0.463946	4.133661	chr11	75607108	75607213	DNA|hAT-Blackjack|MER81	-	chr11	75602859	75669120	MSTRG.3695.4	-	75602859,75667464	75608322,75669120	1.000000
neural_cell	chr9	32603652	32603653	32603652	+	RAMPAGE_only	9	9	9	0.167020	2.725481	chr9	32603444	32603751	SINE|Alu|AluYe5	+	chr9	33025202	33039907	DNAJA1|NM_001539.3	+	33025202,33026474,33026812,33029884,33030439,33034215,33036573,33037014,33038684	33025383,33026616,33026990,33029989,33030667,33034330,33036689,33037115,33039907	1.000000
neural_cell	chr5	34244753	34244826	34244778	-	High_confidence	32	32	241	4.472437	6.287062	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.684647
neural_cell	chrX	131578913	131578914	131578913	-	High_confidence	7	7	11	0.204136	2.921928	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.636364
neural_cell	chr7	99410041	99410050	99410041	+	RAMPAGE_only	3	3	7	0.129905	2.584963	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.714286
neural_cell	chr2	217328089	217328113	217328112	-	RAMPAGE_only	3	3	11	0.204136	3.121928	chr2	217327833	217328312	LTR|ERVL|MLT2C2	-	chr2	217284018	217599932	DIRC3|ENST00000474063.5	-	217284018,217317965,217318919,217325845,217327996,217425301,217426590,217427390,217432922,217433756,217478380,217599611	217284863,217318201,217319177,217325970,217328152,217425522,217426786,217427473,217433021,217434116,217478558,217599932	0.909091
neural_cell	chr10	102419916	102419938	102419937	-	High_confidence	3	3	8	0.148463	2.521641	chr10	102419931	102420131	SINE|MIR|MIRc	+	chr10	102402616	102419934	PSD|NM_001270965.1	-	102402616,102403841,102404582,102404897,102405182,102405345,102407222,102410857,102411057,102411706,102412146,102412380,102413768,102414862,102416016,102416384,102418700,102419873	102403430,102403985,102404727,102405055,102405253,102405536,102407266,102410947,102411116,102411819,102412227,102412575,102414197,102415229,102416119,102417121,102418759,102419934	0.875000
neural_cell	chr11	119046586	119046588	119046587	-	RAMPAGE_only	6	11	11	0.204136	3.027169	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	1.000000
neural_cell	chr5	140700445	140700457	140700445	+	High_confidence	5266	7503	19590	363.547927	4.500925	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.983716
neural_cell	chr4_GL000008v2_random	170351	170368	170351	-	RAMPAGE_only	3	4	8	0.148463	2.500000	chr4_GL000008v2_random	170280	170685	LTR|ERV1|MER61C	+	chr4_GL000008v2_random	161986	178171	ANKRD20A12P|NR_046228.1	-	161986,163784,164602,175824,177526	162439,163998,164884,175974,178171	1.000000
neural_cell	chr2	196593892	196593905	196593892	-	High_confidence	4	4	8	0.148463	2.750000	chr2	196593879	196593974	SINE|MIR|MIRc	+	chr2	196199350	196593692	HECW2|ENST00000644978.1	-	196199350,196215864,196217007,196220038,196220794,196222210,196225771,196228101,196240448,196242083,196253919,196257822,196271192,196274020,196278527,196292564,196306487,196307129,196307934,196317273,196318551,196320338,196322477,196324979,196329574,196334423,196343656,196433131,196593507	196201388,196215977,196217093,196220153,196220941,196222340,196225870,196228254,196240562,196242204,196254029,196257906,196271289,196274123,196278662,196292750,196306612,196307233,196308085,196317369,196319904,196320439,196322620,196325149,196329650,196334518,196343764,196433458,196593692	0.625000
neural_cell	chrX	104112076	104112095	104112083	+	High_confidence	7	7	16	0.296925	3.640224	chrX	104111941	104112155	SINE|MIR|MIRb	+	chrX	104112510	104115604	ZCCHC18|ENST00000537356.3	+	104112510,104113433	104113246,104115604	0.687500
neural_cell	chr8	124673285	124673293	124673292	-	High_confidence	8	8	16	0.296925	3.280639	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.937500
neural_cell	chr11	75979782	75979783	75979782	+	High_confidence	9	9	10	0.185578	2.725481	chr11	75974665	75980018	LINE|L1|L1PA6	-	chr11	75979525	76142651	UVRAG|ENST00000531818.5	+	75979525,75983386,76004004,76007533,76008806,76016814,76065709,76115923,76140710	75980038,75983513,76004089,76007621,76008867,76016980,76065788,76116015,76142651	0.800000
neural_cell	chr20	37298760	37298761	37298760	+	RAMPAGE_only	16	16	16	0.296925	3.375000	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
neural_cell	chr3	110971246	110971266	110971246	-	RAMPAGE_only	3	4	8	0.148463	3.000000	chr3	110971073	110971493	LTR|ERVL|LTR79	-	chr3	110893707	111071524	NECTIN3-AS1|ENST00000474769.5	-	110893707,111069263,111071491	110893830,111069471,111071524	0.500000
neural_cell	chr7	110907171	110907172	110907171	+	RAMPAGE_only	11	12	12	0.222694	3.027169	chr7	110906860	110907686	LTR|ERV1|LTR1D1	-	chr7	111091005	111125454	LRRN3|NM_001099658.1	+	111091005,111099880,111122414	111091504,111099962,111125454	0.916667
neural_cell	chr1	151710837	151710846	151710845	-	High_confidence	4	4	8	0.148463	2.750000	chr1	151710687	151710805	LINE|CR1|L3b	-	chr1	151702404	151710325	CELF3|ENST00000470688.5	-	151702404,151705030,151705821,151706223,151706668,151707144,151707791,151708997,151709219,151709742	151703448,151705168,151705965,151706361,151706734,151707648,151707935,151709077,151709348,151710325	0.875000
neural_cell	chrX	16712869	16712976	16712889	-	High_confidence	18	21	156	2.895022	6.343300	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.897436
neural_cell	chr9	37903557	37903558	37903557	-	High_confidence	19	21	25	0.463946	3.306171	chr9	37903533	37903620	SINE|MIR|MIR3	+	chr9	37887603	37904110	SLC25A51|ENST00000377716.6	-	37887603,37899828,37903530	37888592,37899950,37904110	0.560000
neural_cell	chr7	29970323	29970365	29970364	-	High_confidence	4	4	22	0.408272	3.936260	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	0.863636
neural_cell	chr12	21658232	21658243	21658232	-	High_confidence	3	3	8	0.148463	3.000000	chr12	21658157	21658464	SINE|Alu|AluYf1	-	chr12	21654354	21657971	LDHB|ENST00000544151.1	-	21654354,21657750	21654677,21657971	0.500000
neural_cell	chr7	84150462	84150473	84150462	-	RAMPAGE_only	6	6	10	0.185578	3.121928	chr7	84150229	84151670	LINE|L1|L1PA3	+	chr7	83955776	84194901	SEMA3A|ENST00000265362.8	-	83955776,83963204,83977131,83981320,83985435,84001954,84005338,84007352,84011021,84011182,84014208,84046323,84060464,84110469,84129122,84134793,84194474	83961826,83963347,83977196,83981478,83985477,84002046,84005558,84007497,84011091,84011297,84014351,84046443,84060558,84110589,84129185,84134951,84194901	0.500000
neural_cell	chr5	96934417	96934438	96934437	+	RAMPAGE_only	7	8	34	0.630966	4.354852	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.941176
neural_cell	chr9	72363556	72363557	72363556	-	High_confidence	4	4	7	0.129905	2.584963	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.714286
neural_cell	chr19	58306115	58306128	58306127	+	High_confidence	4	4	12	0.222694	3.027169	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.583333
neural_cell	chr16	30097070	30097084	30097080	+	High_confidence	2219	2235	5515	102.346443	6.577945	chr16	30096875	30097207	LTR|ERV1|LTR10B2	+	chr16	30096429	30104116	AC012645.1|ENST00000515455.2	+	30096429,30103456	30097419,30104116	0.973345
neural_cell	chr22	20017224	20017251	20017224	-	High_confidence	2	2	8	0.148463	3.000000	chr22	20017198	20017356	SINE|MIR|MIRb	-	chr22	19969895	20016808	ARVCF|ENST00000263207.7	-	19969895,19971215,19971885,19972357,19972736,19972924,19973118,19973642,19974111,19975685,19976705,19977414,19977957,19978896,19979742,19981210,19981932,19990584,20010454,20016588	19970743,19971335,19971971,19972411,19972827,19973036,19973317,19973793,19974239,19975757,19976723,19977586,19978075,19979080,19980242,19981737,19982091,19990812,20010508,20016808	0.500000
neural_cell	chr9	62376800	62376801	62376800	-	High_confidence	8	8	9	0.167020	3.000000	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.666667
neural_cell	chr10	32446977	32446995	32446977	+	High_confidence	10	10	26	0.482504	3.943465	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.961538
neural_cell	chr18	36807865	36807895	36807865	-	High_confidence	2	5	9	0.167020	3.169925	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.777778
neural_cell	chr16	47143673	47143745	47143711	-	High_confidence	4	4	37	0.686640	4.841625	chr16	47143450	47143941	LTR|ERV1|LTR12C	+	chr16	47081633	47143709	NETO2|ENST00000303155.9	-	47081633,47086225,47109482,47122656,47122888,47128324,47129223,47131968,47143578	47083801,47086339,47109711,47122784,47122912,47128573,47129364,47132025,47143709	1.000000
neural_cell	chr9	20694517	20694518	20694517	+	RAMPAGE_only	8	8	8	0.148463	2.500000	chr9	20694323	20694599	DNA|hAT-Charlie|Charlie15b	-	chr9	20683977	20995955	MSTRG.20607.3	+	20683977,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20684293,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.625000
neural_cell	chr2	77268535	77268556	77268555	-	RAMPAGE_only	2	3	7	0.129905	2.521641	chr2	77267949	77268636	LINE|L2|L2c	+	chr2	77207170	77307597	MSTRG.12106.2	-	77207170,77246958,77251234,77299352	77246781,77251168,77299306,77307597	0.571429
neural_cell	chr2	202913323	202913340	202913339	-	RAMPAGE_only	16	21	56	1.039239	3.853237	chr2	202913304	202913405	SINE|MIR|MIR	+	chr2	202874781	202912226	WDR12|ENST00000261015.4	-	202874781,202882710,202883608,202884197,202884394,202892616,202894580,202896064,202897299,202899530,202901024,202907864,202911435	202880937,202882783,202883741,202884303,202884535,202892702,202894626,202896219,202897415,202899637,202901119,202907959,202912226	0.928571
neural_cell	chr11	92224397	92224438	92224429	+	High_confidence	7	7	26	0.482504	4.293661	chr11	92224275	92224450	SINE|MIR|MIRc	+	chr11	92224643	92896305	MSTRG.3823.1	+	92224643,92352095,92524633,92697383,92761855,92764878,92765506,92774040,92789942,92792766,92797835,92805152,92806361,92809842,92831621,92834869,92836565,92837662,92840561,92843933,92857213,92859164,92866740,92880730,92882737,92886999,92889188,92889855,92890490	92225174,92355404,92524948,92697445,92762170,92765089,92765575,92774180,92790218,92792977,92801909,92805349,92806515,92810076,92832011,92835084,92836703,92837806,92840759,92844732,92857348,92859322,92867209,92880884,92883393,92887113,92889248,92889891,92896305	0.846154
neural_cell	chr7	93349283	93349299	93349288	+	High_confidence	7	7	18	0.334041	3.794653	chr7	93348983	93349605	LINE|L2|L2c	-	chr7	93349897	93356186	VPS50|ENST00000443443.1	+	93349897,93353639,93355890	93350033,93353761,93356186	0.944444
neural_cell	chr16	68973018	68973075	68973074	+	High_confidence	18	20	85	1.577416	5.249048	chr16	68972577	68973226	LINE|L2|L2a	-	chr16	68973039	69083515	TANGO6|ENST00000562000.5	+	68973039,68974027,69022827,69040307,69083484	68973143,68974168,69022979,69040421,69083515	0.600000
neural_cell	chr18	58487225	58487250	58487225	-	RAMPAGE_only	2	2	9	0.167020	3.000000	chr18	58487117	58487530	LTR|ERVL-MaLR|MLT1C	+	chr18	58481246	58628957	ALPK2|ENST00000361673.3	-	58481246,58498048,58503930,58514992,58516907,58523805,58523934,58529090,58534833,58578813,58607321,58611688,58628763	58482039,58498097,58504148,58515081,58517182,58523841,58524062,58529238,58538224,58580548,58607439,58611817,58628957	0.888889
neural_cell	chr11	65887622	65887623	65887622	-	High_confidence	6	6	8	0.148463	2.807355	chr11	65887463	65887575	LINE|L2|L2	-	chr11	65884934	65888436	FIBP|ENST00000532229.1	-	65884934,65885077,65885508,65887599,65887933,65888333	65884998,65885186,65885663,65887726,65888132,65888436	0.750000
neural_cell	chrX	136023998	136023999	136023998	+	RAMPAGE_only	10	10	14	0.259810	3.546594	chrX	136023892	136024186	SINE|Alu|AluSx	-	chrX	136029442	136047241	SLC9A6|ENST00000636625.1	+	136029442,136030131,136033413,136040075,136044451	136029893,136030162,136033493,136040181,136047241	0.500000
neural_cell	chr12	29317802	29317825	29317802	-	High_confidence	2	2	14	0.259810	3.807355	chr12	29317690	29317914	SINE|MIR|MIRb	-	chr12	29280414	29317848	LOC100506606|NR_103860.1	-	29280414,29282163,29292214,29293065,29307849,29309770,29317707	29281542,29282360,29292328,29293540,29308044,29309903,29317848	0.714286
neural_cell	chr17	82081606	82081623	82081606	-	RAMPAGE_only	8	8	21	0.389714	3.368042	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	1.000000
neural_cell	chr14	30191657	30191683	30191682	-	High_confidence	3	3	9	0.167020	2.500000	chr14	30191268	30191871	LTR|Gypsy?|LTR85a	-	chr14	29663811	30191898	PRKD1|ENST00000549503.1	-	29663811,29666076,29725535,30047709,30191298,30191865	29663859,29666208,29725674,30047787,30191450,30191898	0.555556
neural_cell	chr8	17722667	17722690	17722674	-	High_confidence	3	4	11	0.204136	3.027169	chr8	17722664	17722769	SINE|MIR|MIR	+	chr8	17656025	17722639	MTUS1|ENST00000524044.5	-	17656025,17675185,17684327,17713213,17715766,17722568	17656065,17675252,17684542,17713252,17715901,17722639	0.909091
neural_cell	chr16	57641608	57641648	57641623	+	High_confidence	5	6	31	0.575293	4.413716	chr16	57641565	57641864	SINE|Alu|AluSz6	-	chr16	57640964	57651468	ADGRG1|ENST00000563414.5	+	57640964,57641590,57650252,57651199	57641064,57641708,57650351,57651468	0.935484
neural_cell	chr1	1744629	1744663	1744662	-	RAMPAGE_only	4	4	11	0.204136	3.459432	chr1	1744214	1744636	LTR|ERVL-MaLR|MLT1F2	-	chr1	1724837	1745919	SLC35E2A|ENST00000647043.1	-	1724837,1734689,1738320,1738921,1739235,1744250,1745723	1725422,1734835,1738448,1739057,1739704,1744668,1745919	1.000000
neural_cell	chr12	118172460	118172461	118172460	-	RAMPAGE_only	4	5	7	0.129905	2.584963	chr12	118172293	118172417	LINE|L2|L2b	-	chr12	118159775	118161879	TAOK3|ENST00000537569.1	-	118159775,118161787	118160358,118161879	0.714286
neural_cell	chr13	37000247	37000261	37000260	-	High_confidence	12	12	20	0.371157	2.629249	chr13	37000063	37000363	SINE|Alu|AluY	+	chr13	36985648	37000261	ALG5|ENST00000496689.1	-	36985648,36989483,36993603,36995424,36999931	36985740,36989576,36993672,36995596,37000261	0.950000
neural_cell	chr3	183116008	183116009	183116008	-	High_confidence	9	9	14	0.259810	2.978095	chr3	183115868	183116225	LTR|ERV1|MER51E	-	chr3	183015217	183116075	MCCC1|ENST00000492597.5	-	183015217,183017265,183020129,183022416,183025754,183033990,183037217,183039025,183041566,183045412,183052158,183057310,183070998,183071209,183072365,183086692,183094558,183115473	183015566,183017337,183020237,183022554,183025804,183034077,183037434,183039135,183041750,183045540,183052240,183057422,183071120,183071357,183072487,183086788,183094605,183116075	1.000000
neural_cell	chr11	10044596	10044675	10044634	-	High_confidence	19	22	144	2.672328	4.979743	chr11	10044582	10044610	LTR|ERVL|LTR66	-	chr11	9993011	10044606	SBF2|ENST00000527019.5	-	9993011,9993920,10000913,10002556,10028451,10029764,10031047,10042843,10044518	9993103,9993998,10001022,10002689,10028557,10029875,10031170,10042981,10044606	0.902778
neural_cell	chr14	90257973	90257974	90257973	+	RAMPAGE_only	18	18	18	0.334041	3.572431	chr14	90257919	90258040	SINE|MIR|MIRb	-	chr14	90256577	90272550	PSMC1|ENST00000543772.2	+	90256577,90259159,90263317,90263661,90264040,90265069,90268223,90269396,90270197,90272272	90256600,90259213,90263442,90263847,90264169,90265166,90268413,90269548,90270352,90272550	0.722222
neural_cell	chr12	110440313	110440363	110440326	-	RAMPAGE_only	4	4	19	0.352599	3.947703	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.947368
neural_cell	chrX	131579054	131579096	131579064	-	High_confidence	24	26	80	1.484627	4.231748	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.937500
neural_cell	chr5	96934175	96934180	96934179	+	RAMPAGE_only	5	8	13	0.241252	3.418296	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.538462
neural_cell	chrX	103685578	103685615	103685589	-	High_confidence	5	8	22	0.408272	4.152391	chrX	103685462	103685634	LINE|L1|L1MC5	-	chrX	103676915	103685505	MORF4L2|ENST00000474653.5	-	103676915,103678498,103685170	103677051,103678600,103685505	0.545455
neural_cell	chrX	54920562	54920566	54920562	+	High_confidence	5	5	11	0.204136	3.277613	chrX	54920421	54920568	LINE|L2|L2c	-	chrX	54920562	54922877	TRO|ENST00000452830.5	+	54920562,54922217	54920878,54922877	1.000000
neural_cell	chr12	113773685	113773692	113773685	-	High_confidence	9	12	19	0.352599	3.572431	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113744576	113773683	LINC01234|ENST00000547963.1	-	113744576,113773614	113746595,113773683	0.631579
neural_cell	chr19	58312349	58312350	58312349	+	RAMPAGE_only	6	7	8	0.148463	2.750000	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58305318	58315663	ERVK3-1|ENST00000413518.5	+	58305318,58306087,58312165,58314747	58305445,58306216,58312462,58315663	0.500000
neural_cell	chr6	107872867	107872879	107872878	-	RAMPAGE_only	3	3	12	0.222694	3.095795	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.916667
neural_cell	chr17	35809969	35809970	35809969	+	High_confidence	7	7	8	0.148463	2.521641	chr17	35809910	35810033	SINE|MIR|MIR1_Amn	+	chr17	35809505	35824289	TAF15|ENST00000605197.2	+	35809505,35817715,35820023,35820163,35820331,35822639,35824077	35809576,35817755,35820075,35820248,35820437,35822833,35824289	0.625000
neural_cell	chr17	50737353	50737377	50737376	+	RAMPAGE_only	2	2	8	0.148463	2.521641	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50740266	50744808	LUC7L3|ENST00000507503.1	+	50740266,50741101,50741656,50743705,50744651	50740345,50741246,50741731,50743810,50744808	0.750000
neural_cell	chr4	152412488	152412529	152412488	-	High_confidence	8	8	28	0.519619	4.280395	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
neural_cell	chr2	77593308	77593318	77593308	-	High_confidence	3	3	7	0.129905	2.521641	chr2	77592831	77598845	LINE|L1|L1PA3	+	chr2	77552565	77593319	LRRTM4|ENST00000491242.1	-	77552565,77592814	77552656,77593319	0.714286
neural_cell	chr11	17282914	17282915	17282914	+	RAMPAGE_only	9	9	10	0.185578	2.947703	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.600000
neural_cell	chr20	37345699	37345713	37345699	+	High_confidence	4	4	15	0.278367	3.773557	chr20	37345616	37345768	SINE|MIR|MIR	+	chr20	37346127	37405432	SRC|NM_198291.2	+	37346127,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37346255,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.866667
neural_cell	chr11	83472249	83472272	83472249	-	RAMPAGE_only	3	3	13	0.241252	3.251629	chr11	83472204	83472446	LINE|CR1|L3	-	chr11	83462067	83484213	DLG2|ENST00000457267.5	-	83462067,83466707,83469200,83471625,83484128	83462093,83466817,83469373,83471727,83484213	0.692308
neural_cell	chr8	93003319	93003326	93003319	-	RAMPAGE_only	3	3	9	0.167020	3.000000	chr8	93003138	93003309	LTR|ERVL-MaLR|MSTA	-	chr8	92885319	93017673	TRIQK|ENST00000520686.5	-	92885319,92891988,92916928,92954405,93017608	92886735,92892074,92917010,92954564,93017673	0.777778
neural_cell	chr2	1997327	1997336	1997335	-	RAMPAGE_only	5	6	10	0.185578	2.947703	chr2	1997219	1997369	SINE|MIR|MIRb	+	chr2	1789147	1979220	MYT1L|ENST00000650399.1	-	1789147,1792320,1801695,1809075,1839148,1840759,1851640,1886538,1887487,1889240,1892036,1942981,1979164	1792007,1792464,1801799,1809167,1839370,1840843,1851703,1886607,1887609,1889477,1892287,1943334,1979220	0.900000
neural_cell	chr3	183452099	183452100	183452099	+	RAMPAGE_only	5	5	7	0.129905	2.521641	chr3	183452059	183452354	SINE|Alu|AluSz6	-	chr3	183447650	183455625	LINC00888|ENST00000468380.1	+	183447650,183452077,183454011,183455198	183447947,183452512,183454093,183455625	0.857143
neural_cell	chr8	32927967	32927984	32927967	+	High_confidence	604	605	2016	37.412589	6.797879	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927960	33058552	MSTRG.19937.2	+	32927960,32996200,33041634,33044366	32928093,32996355,33041743,33058552	0.764385
neural_cell	chr2	203324410	203324411	203324410	+	RAMPAGE_only	9	9	14	0.259810	3.039149	chr2	203324185	203324449	LINE|L2|L2	+	chr2	203328218	203447723	ABI2|ENST00000295851.9	+	203328218,203366876,203380207,203382188,203391045,203394699,203395655,203396784,203402575,203416907,203427176	203328631,203367044,203380384,203382206,203391143,203394846,203395780,203396967,203402734,203417081,203447723	1.000000
neural_cell	chr22	36481305	36481346	36481345	-	High_confidence	64	68	339	6.291105	5.447361	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.651917
neural_cell	chr7	87039963	87040005	87039992	-	High_confidence	17	17	79	1.466069	5.993673	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86880015	87040227	MSTRG.19162.3	-	86880015,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,86947726,86964903,87039755	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,86947922,86965024,87040227	0.898734
neural_cell	chr22	24011756	24011757	24011756	+	High_confidence	19	19	20	0.371157	3.576618	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.950000
neural_cell	chr6	118651548	118651626	118651592	-	High_confidence	119	119	832	15.440116	6.954549	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.983173
neural_cell	chr5	65722886	65722896	65722895	-	High_confidence	4	6	10	0.185578	2.846439	chr5	65722781	65722883	DNA|hAT-Ac|OldhAT1	-	chr5	65680687	65723035	SGTB|ENST00000506816.1	-	65680687,65685367,65704278,65708488,65712960,65720707,65722756	65680794,65685472,65704378,65708558,65713064,65720829,65723035	1.000000
neural_cell	chr3	134485387	134485490	134485443	-	High_confidence	176	189	1377	25.554135	6.656876	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.962237
neural_cell	chr12	14026716	14026749	14026748	-	RAMPAGE_only	41	42	108	2.004246	5.781659	chr12	14026657	14027099	LINE|RTE-BovB|MamRTE1	+	chr12	13537336	13982024	MSTRG.4330.2	-	13537336,13567024,13569829,13571803,13608602,13611724,13615113,13615492,13616454,13675744,13753316,13865797,13979927,13981341,13981915	13564639,13567263,13570017,13571964,13608832,13611850,13615267,13615664,13616657,13675859,13753915,13866226,13980356,13981576,13982024	0.898148
neural_cell	chr2	24556052	24556053	24556052	+	RAMPAGE_only	7	7	7	0.129905	2.521641	chr2	24556002	24556528	LINE|L1|L1PA10	-	chr2	24564309	24768543	NCOA1|ENST00000407230.5	+	24564309,24584475,24643965,24658660,24673365,24682950,24691480,24693251,24697657,24705085,24706567,24710930,24726588,24728307,24729500,24739431,24741783,24751981,24757972,24762686,24768078,24768223	24564430,24584560,24644122,24658766,24673463,24683128,24691660,24693347,24697798,24705233,24707888,24711111,24726706,24728476,24729815,24739533,24742186,24752156,24758156,24762776,24768135,24768543	1.000000
neural_cell	chr2	29166105	29166121	29166105	+	RAMPAGE_only	4	5	8	0.148463	2.750000	chr2	29166052	29166164	LINE|L2|L2c	-	chr2	29160365	29167876	CLIP4|ENST00000493551.1	+	29160365,29163830,29167475	29160467,29163954,29167876	0.750000
neural_cell	chr1	86703067	86703089	86703067	+	RAMPAGE_only	5	5	24	0.445388	3.795089	chr1	86702882	86703173	SINE|Alu|AluSz	+	chr1	86704569	86748184	SH3GLB1|NM_016009.4	+	86704569,86715723,86719506,86722539,86724312,86734601,86735078,86742207,86743127	86704971,86715865,86719635,86722673,86724405,86734691,86735179,86742436,86748184	0.958333
neural_cell	chr11	83492857	83492896	83492895	-	RAMPAGE_only	3	3	10	0.185578	2.921928	chr11	83492141	83493336	LINE|L2|L2a	+	chr11	83469286	83682269	MSTRG.3790.18	-	83469286,83471625,83480371,83483252,83499872,83507608,83510473,83541681,83633210,83682157	83469373,83472777,83480413,83499852,83507560,83510203,83532783,83541858,83633325,83682269	1.000000
neural_cell	chr22	35982494	35982517	35982494	-	RAMPAGE_only	2	2	10	0.185578	2.947703	chr22	35982304	35982559	LINE|L2|L2c	+	chr22	35768267	35961666	RBFOX2|ENST00000408983.2	-	35768267,35778024,35781599,35809779,35938846,35961562	35768349,35778078,35781746,35810004,35938897,35961666	0.800000
neural_cell	chr19	9620955	9620979	9620978	+	High_confidence	4	4	9	0.167020	2.725481	chr19	9620760	9621007	SINE|Alu|AluSx	+	chr19	9621290	9633885	ZNF561-AS1|ENST00000591932.5	+	9621290,9632227,9633459	9621350,9632417,9633885	0.888889
neural_cell	chr1	168786921	168786922	168786921	+	High_confidence	9	9	14	0.259810	3.521641	chr1	168786791	168787303	LTR|ERVL-MaLR|MLT1L	+	chr1	168786938	168792886	LINC00626|ENST00000420691.1	+	168786938,168788780,168792330	168787228,168788889,168792886	0.785714
neural_cell	chr15	83208462	83208540	83208462	-	High_confidence	16	16	99	1.837225	5.171616	chr15	83208333	83208482	SINE|MIR|MIR3	+	chr15	83127752	83208018	HDGFL3|ENST00000299633.6	-	83127752,83151214,83157414,83157902,83163998,83207330	83139275,83151361,83157573,83158041,83164075,83208018	0.979798
neural_cell	chr5	43557727	43557759	43557758	-	High_confidence	17	18	30	0.556735	4.047299	chr5	43557737	43557841	DNA|hAT-Charlie|MER33	-	chr5	43547727	43557758	PAIP1|ENST00000515338.1	-	43547727,43555829,43557350	43547913,43555961,43557758	0.800000
neural_cell	chr17	61952970	61953008	61952970	-	RAMPAGE_only	5	5	20	0.371157	3.141446	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.950000
neural_cell	chr2	200888587	200888628	200888587	-	High_confidence	13	14	60	1.113470	5.460976	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.816667
neural_cell	chr2	159428413	159428417	159428413	-	RAMPAGE_only	2	3	7	0.129905	2.521641	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.857143
neural_cell	chr4	56436900	56436923	56436922	+	High_confidence	3	3	7	0.129905	2.807355	chr4	56436712	56437014	SINE|Alu|AluSx	+	chr4	56436151	56464579	PAICS|ENST00000512576.2	+	56436151,56441662,56446694,56448417,56448709,56450618,56451871,56453602,56459371	56436328,56441860,56446873,56448597,56448823,56450702,56452052,56453761,56464579	0.857143
neural_cell	chr1	183419439	183419552	183419506	-	High_confidence	16	17	106	1.967130	5.238975	chr1	183419403	183420074	LINE|L2|L2a	-	chr1	183248236	183418602	NMNAT2|ENST00000287713.6	-	183248236,183261001,183261201,183278552,183283994,183284709,183286661,183290127,183292789,183293704,183418182	183252743,183261069,183261303,183278629,183284039,183284790,183286788,183290206,183292857,183293793,183418602	0.830189
neural_cell	chr3	118810832	118810843	118810832	-	High_confidence	24	24	39	0.723755	4.432294	chr3	118810623	118810985	LTR|ERVL-MaLR|THE1D	-	chr3	118508410	118810833	LOC105374060|NR_135547.1	-	118508410,118550819,118662409,118810706	118508692,118550924,118662490,118810833	0.692308
neural_cell	chr12	109441217	109441226	109441217	+	High_confidence	18	18	56	1.039239	4.918526	chr12	109441142	109441345	DNA|hAT-Charlie|MER58A	-	chr12	109440566	109443670	MYO1H|ENST00000457826.2	+	109440566,109441614,109442216,109443513	109440827,109441708,109442272,109443670	0.607143
neural_cell	chr9	39809852	39809879	39809858	-	High_confidence	26	39	120	2.226940	4.725177	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.858333
neural_cell	chr4	1241353	1241362	1241361	-	RAMPAGE_only	3	3	7	0.129905	2.584963	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1248740	CTBP1|ENST00000513420.1	-	1225437,1228198,1238182,1241324,1248660	1225566,1228343,1238337,1241519,1248740	0.857143
neural_cell	chr2	9422943	9422971	9422970	-	High_confidence	6	6	16	0.296925	3.773557	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9403474	9423229	ITGB1BP1|ENST00000360635.7	-	9403474,9407448,9408112,9412268,9414177,9418625,9419989,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9420100,9423229	0.937500
neural_cell	chr6	79631242	79631329	79631302	+	High_confidence	542	546	2329	43.221191	6.408583	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.978532
neural_cell	chr7	18395180	18395181	18395180	+	RAMPAGE_only	10	10	10	0.185578	3.121928	chr7	18395143	18395371	SINE|MIR|MIRc	+	chr7	18495709	18591544	HDAC9|ENST00000413380.5	+	18495709,18496261,18585280,18590335,18591515	18496023,18496324,18585522,18590486,18591544	0.800000
neural_cell	chr11	13419607	13419730	13419689	-	RAMPAGE_only	14	15	64	1.187701	4.038660	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	1.000000
neural_cell	chr12	122064308	122064337	122064327	+	RAMPAGE_only	7	11	40	0.742313	4.875146	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.625000
neural_cell	chr2	191245211	191245222	191245218	+	High_confidence	7	7	21	0.389714	4.121928	chr2	191245108	191245343	LINE|L1|L1M4b	+	chr2	191245184	191346274	MYO1B|ENST00000418908.5	+	191245184,191276886,191296110,191329934,191341460,191346235	191245257,191277030,191296226,191330029,191341565,191346274	0.904762
neural_cell	chr11	41227010	41227031	41227030	-	RAMPAGE_only	10	10	16	0.296925	3.625000	chr11	41226957	41227150	LINE|L2|L2	+	chr11	40648223	41459636	LRRC4C|ENST00000534577.1	-	40648223,40933634,41222796,41459430	40648278,40933723,41223008,41459636	0.500000
neural_cell	chr7	130275997	130276042	130276041	+	RAMPAGE_only	9	10	33	0.612408	4.078506	chr7	130275968	130276168	SINE|5S-Deu-L2|AmnSINE1	-	chr7	130266862	130289798	CPA2|NM_001869.2	+	130266862,130268928,130269668,130270692,130273075,130275148,130276627,130277825,130279462,130282103,130289559	130266952,130269010,130269803,130270788,130273177,130275247,130276738,130277916,130279662,130282188,130289798	0.909091
neural_cell	chr10	35428118	35428131	35428130	+	RAMPAGE_only	5	5	10	0.185578	2.947703	chr10	35428080	35428596	LINE|L2|L2b	-	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.900000
neural_cell	chr2	174919335	174919348	174919347	-	RAMPAGE_only	8	9	19	0.352599	4.142664	chr2	174919108	174919401	LINE|L2|L2a	-	chr2	174846913	174915292	CHN1|ENST00000490654.1	-	174846913,174877839,174915057	174846957,174878128,174915292	0.894737
neural_cell	chr1	212792425	212792473	212792472	-	High_confidence	21	23	78	1.447511	5.354834	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.756410
neural_cell	chr19	34860262	34860301	34860262	-	RAMPAGE_only	3	3	14	0.259810	3.700440	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34816153	34832869	LOC400685|NR_033982.1	-	34816153,34818586,34829163,34830405,34832329,34832724	34817490,34818766,34829253,34830526,34832536,34832869	0.500000
neural_cell	chr1	168179916	168179925	168179916	+	High_confidence	2	3	7	0.129905	2.584963	chr1	168179860	168180632	LINE|L2|L2c	-	chr1	168178932	168202114	TIPRL|ENST00000367833.6	+	168178932,168183901,168184778,168191368,168196546,168198918,168199902	168179181,168184081,168184878,168191500,168196642,168198981,168202114	0.571429
neural_cell	chr19	34860679	34860701	34860700	-	High_confidence	6	10	36	0.668082	4.729283	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34850627	34860576	AC008555.5|ENST00000604749.1	-	34850627,34860173	34850794,34860576	0.555556
neural_cell	chr4	98891320	98891330	98891329	-	High_confidence	6	7	11	0.204136	2.550341	chr4	98891322	98891802	LINE|L1|L1MB2	+	chr4	98881009	98890898	EIF4E|ENST00000505194.5	-	98881009,98884921,98887078,98887888,98890786	98881142,98885061,98887192,98887952,98890898	1.000000
neural_cell	chr19	40592396	40592458	40592437	+	High_confidence	60	62	351	6.513799	6.168222	chr19	40592206	40592445	LTR|ERVL-MaLR|MLT1K	-	chr19	40592314	40623969	MSTRG.11071.1	+	40592314,40599196,40599420,40600067,40605034,40605404,40605728,40606232,40606403,40607364,40608219,40608483,40609529,40609745,40610531,40611151,40611858,40612072,40613064,40613403,40613915,40614314,40616888,40617099,40619346,40623603,40623935	40593181,40599255,40599556,40600177,40605226,40605652,40605831,40606307,40606526,40607529,40608369,40608603,40609661,40609871,40610657,40611394,40611984,40612192,40613196,40613529,40614038,40614446,40617020,40617225,40619493,40623732,40623969	0.980057
neural_cell	chr1	41186185	41186186	41186185	-	RAMPAGE_only	7	7	9	0.167020	2.750000	chr1	41186124	41186319	SINE|MIR|MIR1_Amn	+	chr1	41027198	41163017	SCMH1|NM_001172221.1	-	41027198,41028583,41033982,41037361,41046406,41048689,41070594,41075218,41113282,41116921,41142877,41151613,41160874,41161363,41162778	41028319,41028726,41034048,41037541,41046598,41048890,41070721,41075451,41113526,41117010,41143112,41151684,41160898,41161432,41163017	0.777778
neural_cell	chrX	147937551	147937584	147937559	+	RAMPAGE_only	2	2	11	0.204136	2.921928	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147943244	147948534	FMR1|ENST00000463120.2	+	147943244,147944868,147945533,147948412	147943326,147945051,147945616,147948534	0.818182
neural_cell	chr16	22007346	22007398	22007397	+	High_confidence	6	6	20	0.371157	3.721612	chr16	22006872	22007647	LINE|L2|L2a	+	chr16	22008134	22084654	C16orf52|NM_001164579.1	+	22008134,22075486,22080695	22008407,22075699,22084654	0.650000
neural_cell	chr3	167483799	167483800	167483799	-	RAMPAGE_only	9	10	12	0.222694	3.418296	chr3	167483531	167483877	DNA|hAT-Tip100|Arthur1C	-	chr3	167441788	167479004	SERPINI2|ENST00000476257.5	-	167441788,167446391,167449315,167452935,167465205,167465478,167467054,167471587,167474002,167478845	167442185,167446481,167449402,167453033,167465398,167465673,167467285,167471844,167474132,167479004	0.750000
neural_cell	chr17	68413639	68413649	68413648	+	High_confidence	3	3	12	0.222694	3.418296	chr17	68408123	68414142	LINE|L1|L1PA3	-	chr17	68413622	68524949	AC007780.1|ENST00000590353.1	+	68413622,68515393,68522755,68523724,68524015,68524911	68413795,68515576,68522926,68523816,68524077,68524949	0.833333
neural_cell	chr12	46266488	46266550	46266494	-	High_confidence	16	22	110	2.041362	5.823375	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.745455
neural_cell	chr5	161368720	161368779	161368741	-	RAMPAGE_only	16	16	86	1.595974	4.928414	chr5	161368690	161368880	LINE|L2|L2	-	chr5	161288428	161546643	GABRB2|ENST00000393959.5	-	161288428,161326367,161330882,161334751,161336631,161410974,161459623,161545226,161546321,161546566	161294428,161326481,161331127,161334904,161336769,161411057,161459844,161545294,161546413,161546643	0.930233
neural_cell	chr2	240022172	240022216	240022172	-	RAMPAGE_only	15	15	28	0.519619	3.167493	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
neural_cell	chr9	128185576	128185578	128185577	-	RAMPAGE_only	13	17	23	0.426830	4.106603	chr9	128185400	128185541	SINE|MIR|MIR3	-	chr9	128177587	128180798	CIZ1|ENST00000476239.5	-	128177587,128178368,128178708,128179243,128180414,128180720	128177763,128178490,128178904,128179415,128180523,128180798	0.521739
neural_cell	chr15	43510434	43510447	43510446	-	High_confidence	11	12	31	0.575293	4.098069	chr15	43510182	43510408	LINE|CR1|L3b	-	chr15	43407213	43510509	TP53BP1|NM_005657.2	-	43407213,43407942,43408896,43409646,43413118,43415593,43416224,43420304,43421024,43421854,43428015,43432193,43438323,43441525,43446386,43447365,43455891,43469857,43474672,43475564,43477592,43479396,43479858,43480894,43491668,43492001,43492283,43510369	43407570,43408088,43409096,43409741,43413334,43415809,43416416,43420735,43421174,43422126,43428168,43432677,43438416,43441583,43446590,43447485,43457218,43470066,43474767,43475694,43477759,43479526,43480017,43481022,43491753,43492095,43492468,43510509	0.935484
neural_cell	chr19	34860565	34860634	34860575	-	RAMPAGE_only	31	35	110	2.041362	5.942375	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34816153	34832869	LOC400685|NR_033982.1	-	34816153,34818586,34829163,34830405,34832329,34832724	34817490,34818766,34829253,34830526,34832536,34832869	0.609091
neural_cell	chr14	103684996	103685017	103685003	+	RAMPAGE_only	4	4	9	0.167020	2.500000	chr14	103684918	103685042	SINE|MIR|MIRc	-	chr14	103629236	103686211	KLC1|ENST00000553286.5	+	103629236,103654563,103657545,103662115,103662701,103669510,103670181,103673013,103673331,103675551,103675688,103677414,103679383,103684985	103629494,103654825,103657776,103662194,103662927,103669598,103670283,103673187,103673431,103675601,103675756,103677523,103679545,103686211	0.888889
neural_cell	chr9	62897598	62897623	62897598	-	High_confidence	6	6	15	0.278367	3.664498	chr9	62897543	62897631	SINE|MIR|MIRb	-	chr9	62857832	62897707	AL512625.3|ENST00000591993.5	-	62857832,62859071,62866966,62867696,62869189,62897528	62858183,62859193,62867110,62867876,62869304,62897707	0.600000
neural_cell	chrX	147937519	147937528	147937519	+	RAMPAGE_only	6	7	14	0.259810	3.392747	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.500000
neural_cell	chr10	75930322	75930343	75930341	+	RAMPAGE_only	4	6	12	0.222694	3.027169	chr10	75930353	75930526	LINE|L1|L1M5	+	chr10	76036005	76058789	LRMDA|ENST00000611306.1	+	76036005,76047163,76058665	76036134,76047303,76058789	0.583333
neural_cell	chr10	17617789	17617798	17617796	-	High_confidence	4	5	13	0.241252	3.251629	chr10	17617759	17617913	SINE|Alu|FRAM	-	chr10	17599073	17617235	HACD1|ENST00000466335.1	-	17599073,17603559,17603725,17603929,17617082	17599411,17603648,17603744,17604047,17617235	0.615385
neural_cell	chr12	99155935	99155959	99155935	-	High_confidence	3	4	13	0.241252	3.085055	chr12	99155702	99156003	LINE|CR1|L3	-	chr12	98743973	99155090	ANKS1B|NM_001204067.1	-	98743973,98751354,98773041,98781116,98782125,98798933,98800996,98832028,99053156,99084924,99154288,99154969	98745846,98751522,98773179,98781203,98782137,98799005,98801125,98832136,99053309,99085023,99154395,99155090	0.923077
neural_cell	chr19	52347774	52347786	52347774	+	RAMPAGE_only	3	4	8	0.148463	2.521641	chr19	52347822	52348234	DNA|TcMar-Tigger|Tigger3	+	chr19	52349144	52367122	ZNF610|ENST00000616431.2	+	52349144,52353681,52354250,52365697	52349235,52353808,52354379,52367122	0.875000
neural_cell	chr19	19034101	19034125	19034124	+	High_confidence	10	10	20	0.371157	4.142664	chr19	19034116	19034210	LINE|L2|L2b	-	chr19	19034102	19057881	ARMC6|ENST00000392336.7	+	19034102,19042710,19043991,19051621,19054151,19055264,19055790,19057415	19034238,19042877,19044074,19052195,19054321,19055396,19055928,19057881	0.600000
neural_cell	chr9	79575030	79575050	79575030	+	High_confidence	15	17	34	0.630966	4.793345	chr9	79575041	79575200	DNA?|DNA?|MER131	+	chr9	79575778	79652737	TLE4|ENST00000496853.5	+	79575778,79612655,79627373,79652589	79576027,79612718,79627448,79652737	0.735294
neural_cell	chr11	73886825	73886826	73886825	+	High_confidence	6	6	6	0.111347	2.584963	chr11	73886749	73887180	LTR|ERVL-MaLR|MSTB1	+	chr11	73887062	73927734	PAAF1|ENST00000376384.9	+	73887062,73887353,73891111,73899145,73900269,73909398,73914412,73916544,73918949,73924614,73927284	73887099,73887457,73891201,73899244,73900420,73909593,73914504,73916660,73919032,73924697,73927734	0.666667
neural_cell	chr2	29166142	29166151	29166150	+	RAMPAGE_only	8	8	14	0.259810	3.392747	chr2	29166052	29166164	LINE|L2|L2c	-	chr2	29160365	29167876	CLIP4|ENST00000493551.1	+	29160365,29163830,29167475	29160467,29163954,29167876	0.857143
neural_cell	chr1	182672923	182672941	182672923	-	High_confidence	3	3	6	0.111347	2.584963	chr1	182672886	182673055	DNA|hAT-Charlie|MER5A	+	chr1	182641813	182672932	RGS8|NM_001102450.2	-	182641813,182648136,182665968,182666871,182669623,182671656,182672818	182646917,182648303,182666033,182666973,182669752,182671730,182672932	0.833333
neural_cell	chr3	132627106	132627117	132627106	-	High_confidence	6	7	14	0.259810	3.085055	chr3	132627080	132627408	LTR|ERV1|MER61C	+	chr3	132579178	132627074	ACAD11|ENST00000487024.1	-	132579178,132603228,132605097,132618633,132619467,132626690	132579558,132603327,132605205,132618772,132619545,132627074	0.857143
neural_cell	chr11	117877350	117877504	117877416	-	High_confidence	24	24	220	4.082723	5.737828	chr11	117877415	117877598	SINE|MIR|MIRb	+	chr11	117838234	117877430	FXYD6|ENST00000524841.5	-	117838234,117839780,117840236,117841147,117841790,117841989,117842718,117877298	117838277,117839830,117840368,117841184,117841865,117842028,117842781,117877430	0.586364
neural_cell	chr11	96387561	96387574	96387561	-	High_confidence	15	15	29	0.538177	4.280395	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	0.827586
neural_cell	chr5	154038408	154038416	154038408	-	High_confidence	5	5	10	0.185578	3.169925	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.600000
neural_cell	chr16	24729056	24729074	24729056	+	High_confidence	7	7	28	0.519619	4.664498	chr16	24728975	24729113	LINE|L1|L1M5	-	chr16	24729694	24826221	TNRC6A|ENST00000315183.11	+	24729694,24730252,24750725,24758338,24776932,24789231,24793472,24794543,24795906,24797489,24797914,24804176,24805013,24805604,24806205,24806573,24809349,24815146,24816815,24818592,24820138,24822076,24822873,24823431	24729846,24730300,24750813,24758360,24777358,24791817,24793649,24794719,24795939,24797570,24797966,24804319,24805151,24805733,24806283,24806784,24809481,24815305,24816956,24818700,24820360,24822147,24823013,24826221	0.750000
neural_cell	chr7	138982278	138982292	138982291	-	High_confidence	3	5	9	0.167020	3.000000	chr7	138982228	138982274	SINE|MIR|MIRb	-	chr7	138831380	138981318	KIAA1549|ENST00000440172.5	-	138831380,138840132,138844316,138852222,138861138,138867974,138869537,138871156,138879537,138881387,138894341,138898954,138903587,138905021,138906918,138908990,138911145,138912371,138916747,138981082	138838112,138840278,138844474,138852269,138861456,138868128,138869761,138871362,138879653,138881584,138894526,138899132,138903736,138905081,138907102,138909121,138911323,138912460,138919438,138981318	0.888889
neural_cell	chr16	22007441	22007464	22007463	+	High_confidence	4	5	8	0.148463	2.750000	chr16	22006872	22007647	LINE|L2|L2a	+	chr16	22007637	22076378	MOSMO|ENST00000567004.1	+	22007637,22075486	22007696,22076378	0.750000
neural_cell	chr5	34244698	34244699	34244698	-	High_confidence	11	11	14	0.259810	3.700440	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34153713	34244698	MSTRG.16604.1	-	34153713,34175444,34175821,34179012,34182679,34200820,34218294,34244615	34169153,34175537,34175957,34179097,34182867,34200921,34218450,34244698	0.714286
neural_cell	chr10	97634108	97634137	97634108	-	High_confidence	6	6	15	0.278367	3.640224	chr10	97634006	97634308	SINE|Alu|AluJo	+	chr10	97614552	97634156	MORN4|NM_001098831.1	-	97614552,97616677,97617207,97619586,97634004	97616411,97616787,97617322,97619683,97634156	0.866667
neural_cell	chr14	81170402	81170431	81170412	-	High_confidence	22	43	160	2.969253	5.497120	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.987500
neural_cell	chr5	160187453	160187454	160187453	+	High_confidence	6	8	8	0.148463	3.000000	chr5	160187374	160187670	LINE|L2|L2b	-	chr5	160187366	160238735	FABP6|ENST00000393980.8	+	160187366,160199048,160213735,160229545,160232097,160234819,160238605	160187454,160199157,160213819,160229624,160232273,160234909,160238735	1.000000
neural_cell	chr7	30594475	30594495	30594475	-	High_confidence	5	5	9	0.167020	2.750000	chr7	30594385	30594501	SINE|MIR|MIR3	+	chr7	30548358	30594743	GARS-DT|ENST00000426529.6	-	30548358,30551317,30552099,30561465,30563730,30568832,30584710,30585329,30594710	30550781,30551479,30552179,30562128,30563998,30568989,30584808,30585479,30594743	0.666667
neural_cell	chr12	13544041	13544219	13544218	-	RAMPAGE_only	70	70	279	5.177635	6.305347	chr12	13542496	13545457	LINE|L2|L2a	+	chr12	13537336	13980363	GRIN2B|ENST00000609686.3	-	13537336,13567024,13569829,13571803,13608602,13611724,13615113,13615492,13616454,13675744,13753316,13865797,13979927	13564639,13567263,13570017,13571964,13608832,13611850,13615267,13615664,13616657,13675859,13753915,13866226,13980363	0.996416
neural_cell	chr1	16515402	16515424	16515417	+	High_confidence	3	5	12	0.222694	2.550341	chr1	16515321	16515867	LTR|ERV1|MER41E	+	chr1	16515033	16521788	AL137802.3|ENST00000648419.1	+	16515033,16520731,16521563	16516310,16520787,16521788	0.833333
neural_cell	chr8	144427274	144427275	144427274	-	High_confidence	78	82	88	1.633089	3.408787	chr8	144427020	144427326	SINE|Alu|AluSx	+	chr8	144424964	144427294	VPS28|ENST00000531924.1	-	144424964,144425682,144426025,144426908	144425000,144425772,144426208,144427294	0.943182
neural_cell	chr5	83482454	83482462	83482461	+	RAMPAGE_only	4	4	9	0.167020	2.750000	chr5	83482194	83482548	LTR|ERVL-MaLR|MLT1L	-	chr5	83471924	83580448	VCAN|ENST00000502527.2	+	83471924,83483512,83490097,83493545,83493803,83512102,83545536,83547970,83553363,83554955,83572415,83579979,83580306	83472023,83483588,83490472,83493720,83493931,83512396,83545650,83548084,83553522,83555038,83572560,83580162,83580448	0.555556
neural_cell	chr16	66408512	66408539	66408530	+	High_confidence	3	3	13	0.241252	3.700440	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.923077
neural_cell	chr4	92522424	92522506	92522505	+	RAMPAGE_only	12	22	67	1.243375	5.294637	chr4	92521886	92522890	LINE|L2|L2a	-	chr4	92304484	93774553	MSTRG.16066.3	+	92304484,92590130,92604523,92621087,92706479,92804035,93084994,93110747,93207403,93216737,93224613,93238370,93395606,93422770,93455661,93490638,93515215,93626268,93769209,93772075	92304744,92604498,92620858,92640076,92803942,92823022,93085279,93110953,93207457,93216911,93224775,93238490,93395708,93422968,93455974,93490777,93515411,93626435,93769450,93774553	0.820896
neural_cell	chr7	6590246	6590293	6590246	+	High_confidence	52	53	200	3.711566	5.756419	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.940000
neural_cell	chr15	58851957	58851958	58851957	+	RAMPAGE_only	21	21	21	0.389714	4.106603	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	1.000000
neural_cell	chr7	11252923	11252994	11252993	+	High_confidence	14	14	90	1.670205	5.496393	chr7	11252764	11253207	LTR|ERVL|LTR40b	-	chr7	11252979	11520175	AC004160.1|ENST00000445839.5	+	11252979,11379286,11383796,11520051	11253225,11379369,11383908,11520175	0.855556
neural_cell	chr19	58306201	58306205	58306201	+	High_confidence	3	3	7	0.129905	2.807355	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58315203	MSTRG.11494.30	+	58305376,58306087,58314747	58305445,58312462,58315203	1.000000
neural_cell	chr9	20658312	20658427	20658338	+	High_confidence	25	29	225	4.175512	5.446675	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.773333
neural_cell	chr19	50476946	50476955	50476954	+	High_confidence	6	6	13	0.241252	3.392747	chr19	50476976	50477106	SINE|Alu|AluJr	+	chr19	50476942	50479066	EMC10|ENST00000597799.1	+	50476942,50477928,50478956	50477221,50478001,50479066	0.769231
neural_cell	chr14	30191756	30191775	30191759	-	High_confidence	94	134	291	5.400329	6.187702	chr14	30191268	30191871	LTR|Gypsy?|LTR85a	-	chr14	29663811	30191898	PRKD1|ENST00000549503.1	-	29663811,29666076,29725535,30047709,30191298,30191865	29663859,29666208,29725674,30047787,30191450,30191898	0.539519
neural_cell	chr2	77029561	77029572	77029571	-	RAMPAGE_only	3	3	7	0.129905	2.584963	chr2	77029179	77029626	LTR|ERVL|MLT2A2	-	chr2	76802236	77041827	MSTRG.12103.1	-	76802236,76807503	76807399,77041827	0.857143
neural_cell	chr7	93349231	93349242	93349241	+	High_confidence	7	9	15	0.278367	3.506891	chr7	93348983	93349605	LINE|L2|L2c	-	chr7	93349897	93356186	VPS50|ENST00000443443.1	+	93349897,93353639,93355890	93350033,93353761,93356186	0.800000
neural_cell	chr4	88533213	88533225	88533222	-	RAMPAGE_only	36	38	68	1.261933	4.802119	chr4	88532886	88533429	LTR|ERVL|MLT2A2	-	chr4	88520984	88523813	PYURF|ENST00000273968.4	-	88520984,88523497	88522029,88523813	0.808824
neural_cell	chr2	55618850	55618904	55618850	-	High_confidence	73	75	279	5.177635	6.663323	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.960573
neural_cell	chr7	128726237	128726286	128726254	+	RAMPAGE_only	24	25	100	1.855783	5.760469	chr7	128725963	128726304	LINE|L2|L2	-	chr7	128715388	128731743	FAM71F1|ENST00000315184.9	+	128715388,128716812,128718830,128723196,128726827,128729901,128731099	128715690,128716997,128719083,128723318,128726871,128730069,128731743	0.500000
neural_cell	chr12	84910874	84910899	84910874	-	RAMPAGE_only	2	3	9	0.167020	2.500000	chr12	84910504	84910928	LTR|ERV1|LTR46	+	chr12	84891832	84912024	SLC6A15|ENST00000549540.1	-	84891832,84911937	84892308,84912024	0.888889
neural_cell	chr2	185425044	185425414	185425075	+	High_confidence	104	121	1356	25.164420	7.688834	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185424796	185766549	MSTRG.12705.1	+	185424796,185434096,185483033,185739345,185743132,185744321,185745428,185746668,185747312,185753721,185760987,185761971,185763182,185764501	185425507,185434191,185483091,185739471,185743294,185744411,185745568,185746810,185747423,185753848,185761103,185762017,185763289,185766549	0.785398
neural_cell	chr16	2757779	2757802	2757779	+	High_confidence	4	5	15	0.278367	3.664498	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.933333
neural_cell	chrX	76173255	76173269	76173268	+	High_confidence	3	3	9	0.167020	2.725481	chrX	76173221	76173522	SINE|Alu|AluJb	-	chrX	76173039	76178196	PBDC1|ENST00000373357.3	+	76173039,76173584,76174889,76175472,76177615	76173168,76173650,76174949,76175613,76178196	1.000000
neural_cell	chr7	108529536	108529555	108529547	+	RAMPAGE_only	24	24	80	1.484627	4.669685	chr7	108529258	108529828	LTR|ERVL-MaLR|MLT1E2	+	chr7	108569567	108574850	DNAJB9|ENST00000249356.3	+	108569567,108571716,108572898	108570103,108571943,108574850	0.887500
neural_cell	chr6	118574064	118574104	118574064	-	High_confidence	11	13	67	1.243375	5.506242	chr6	118574043	118574503	LTR|ERV1|LTR10B2	+	chr6	118565558	118574068	CEP85L|ENST00000472713.1	-	118565558,118573990	118566316,118574068	0.835821
neural_cell	chr14	40954376	40954440	40954376	+	High_confidence	4	4	31	0.575293	4.256565	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954710	41141048	LOC644919|NR_109758.1	+	40954710,40962789,40974339,41140833	40954952,40962842,40974390,41141048	0.580645
neural_cell	chr16	30096896	30096951	30096901	-	High_confidence	99	119	657	12.192496	6.839160	chr16	30096875	30097207	LTR|ERV1|LTR10B2	+	chr16	30092636	30096912	YPEL3|ENST00000566595.5	-	30092636,30094788,30095102,30095251,30096615	30092799,30094897,30095146,30095434,30096912	0.704718
neural_cell	chr14	52543591	52543619	52543618	-	RAMPAGE_only	3	3	11	0.204136	3.121928	chr14	52543581	52543672	LINE|L2|L2a	+	chr14	52488362	52552505	MSTRG.6061.4	-	52488362,52490390,52490838,52511239,52519171,52536718,52537598,52542370,52543397,52544263,52552315	52488486,52490451,52491005,52514970,52519293,52536793,52537672,52542453,52543630,52544371,52552505	0.909091
neural_cell	chr13	114284224	114284242	114284224	+	RAMPAGE_only	6	6	13	0.241252	3.700440	chr13	114284081	114284352	SINE|Alu|AluSg	+	chr13	114285974	114291718	UPF3A|ENST00000481131.5	+	114285974,114286518,114291488,114291633	114286400,114286629,114291544,114291718	0.846154
neural_cell	chr6	122482032	122482086	122482061	+	RAMPAGE_only	122	136	324	6.012738	6.539174	chr6	122481961	122482259	SINE|Alu|AluYe5	-	chr6	122471930	122725890	PKIB|ENST00000392491.6	+	122471930,122477850,122585920,122633282,122675077,122717786,122725127	122472041,122477939,122586007,122633367,122675144,122717963,122725890	0.712963
neural_cell	chr5	140648255	140648266	140648255	+	High_confidence	3	3	8	0.148463	3.000000	chr5	140648155	140648448	LINE|L2|L2c	+	chr5	140648093	140654727	IK|ENST00000502899.2	+	140648093,140648470,140651713,140652087,140652976,140653937,140654515,140654680	140648162,140648537,140651806,140652147,140653144,140654052,140654586,140654727	1.000000
neural_cell	chr7	2230728	2230729	2230728	-	High_confidence	8	8	8	0.148463	2.750000	chr7	2230469	2230994	DNA|MULE-MuDR|Ricksha_c	-	chr7	2219352	2230661	MAD1L1|ENST00000455998.5	-	2219352,2222574,2229983,2230548	2219456,2222754,2230143,2230661	0.750000
neural_cell	chr15	33194695	33194715	33194708	-	High_confidence	13	13	54	1.002123	5.097299	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.592593
neural_cell	chr2	77244628	77244629	77244628	-	RAMPAGE_only	8	9	9	0.167020	2.750000	chr2	77244545	77245106	LTR|ERVL-MaLR|MLT1F2	+	chr2	77207170	77307597	MSTRG.12106.2	-	77207170,77246958,77251234,77299352	77246781,77251168,77299306,77307597	0.777778
neural_cell	chrX	71383124	71383125	71383124	+	RAMPAGE_only	15	15	17	0.315483	3.734522	chrX	71383170	71383464	LINE|L1|L1MC5a	+	chrX	71387085	71388301	TAF1|ENST00000472567.1	+	71387085,71388236	71387461,71388301	0.529412
neural_cell	chr11	66257267	66257288	66257281	+	High_confidence	6	6	32	0.593851	4.577820	chr11	66257301	66257398	SINE|MIR|MIR	+	chr11	66257293	66261829	KLC2|ENST00000531240.5	+	66257293,66258546,66261741	66257488,66258822,66261829	0.656250
neural_cell	chr11	66729245	66729350	66729279	-	High_confidence	119	130	1190	22.083820	5.879319	chr11	66729233	66729349	SINE|MIR|MIRb	-	chr11	66715353	66729226	SPTBN2|ENST00000527010.1	-	66715353,66715829,66721083,66728740	66715395,66715981,66721262,66729226	0.987395
neural_cell	chr5	139364719	139364731	139364719	+	RAMPAGE_only	3	3	10	0.185578	2.725481	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342441	139369720	PAIP2|ENST00000394795.6	+	139342441,139363758,139364563,139368732	139343406,139363922,139364743,139369720	0.700000
neural_cell	chr3	9986881	9986905	9986887	+	High_confidence	25	27	120	2.226940	5.938108	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.566667
neural_cell	chr19	40716682	40716740	40716721	-	High_confidence	4	5	19	0.352599	4.247928	chr19	40716589	40716687	SINE|MIR|MIRc	-	chr19	40704167	40716885	COQ8B|ENST00000601451.5	-	40704167,40710058,40714066,40714277,40714530,40716586	40705447,40710136,40714133,40714397,40714635,40716885	0.894737
neural_cell	chr3	118810798	118810799	118810798	-	High_confidence	4	6	6	0.111347	2.584963	chr3	118810623	118810985	LTR|ERVL-MaLR|THE1D	-	chr3	118508410	118810833	LOC105374060|NR_135547.1	-	118508410,118550819,118662409,118810706	118508692,118550924,118662490,118810833	0.500000
neural_cell	chr9	95874434	95874441	95874439	+	High_confidence	4	6	10	0.185578	3.169925	chr9	95874437	95874902	LTR|ERVL-MaLR|MLT1D	+	chr9	95874440	96014571	MSTRG.20931.1	+	95874440,95880868,95897848,95907077,95915667,95916226,95921174,95922304,95923259,95928078,95928718,95941453,95955913,95966561,95970575,95971932,95978060,96004519,96012224	95876084,95881293,95897971,95907271,95915829,95916434,95921315,95922418,95923379,95928150,95928864,95941549,95956013,95966714,95970656,95973088,95978215,96004701,96014571	0.900000
neural_cell	chr1	168137346	168137600	168137436	-	High_confidence	106	108	1774	32.921594	7.593380	chr1	168137391	168137473	LINE|L2|L2b	-	chr1	168085277	168137583	GPR161|ENST00000367835.1	-	168085277,168087584,168090563,168096507,168104476,168114455,168137164	168085796,168087704,168090668,168097232,168104894,168114549,168137583	0.719278
neural_cell	chr5	171388820	171388843	171388820	+	High_confidence	5	5	17	0.315483	3.375000	chr5	171388724	171388932	SINE|MIR|MIRb	-	chr5	171387884	171392963	NPM1|ENST00000518587.1	+	171387884,171390050,171391304,171391705,171392709	171388006,171390130,171391424,171391799,171392963	0.941176
neural_cell	chr3	194632868	194632909	194632868	+	High_confidence	5	5	17	0.315483	3.410417	chr3	194632668	194632869	SINE|MIR|MIR	-	chr3	194632922	194645401	AC046143.1|ENST00000447139.1	+	194632922,194644674	194633167,194645401	1.000000
neural_cell	chr22	26512099	26512136	26512099	-	High_confidence	3	3	9	0.167020	2.947703	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	1.000000
neural_cell	chrX	54807548	54807594	54807582	+	High_confidence	14	14	38	0.705198	4.607018	chrX	54807588	54807638	SINE|MIR|MIRb	+	chrX	54807598	54815694	MAGED2|ENST00000375053.6	+	54807598,54809302,54809721,54810820,54811249,54811573,54812156,54812944,54813117,54813487,54814660,54815247	54807802,54809376,54810213,54811129,54811313,54811653,54812251,54813024,54813160,54813550,54814775,54815694	0.789474
neural_cell	chr14	47795013	47795027	47795013	-	High_confidence	8	10	21	0.389714	4.121928	chr14	47794965	47800647	LINE|L1|L1PA2	+	chr14	47764952	47795014	LINC00648|NR_039996.1	-	47764952,47789905,47794971	47767757,47789943,47795014	0.619048
neural_cell	chr17	41871819	41871820	41871819	-	RAMPAGE_only	13	14	19	0.352599	4.037401	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.947368
neural_cell	chr6	88147697	88147745	88147713	-	RAMPAGE_only	8	8	38	0.705198	4.347435	chr6	88147611	88147801	LINE|L2|L2c	+	chr6	88143243	88145365	CNR1|ENST00000549890.1	-	88143243	88145365	0.921053
neural_cell	chrX	85224241	85224256	85224241	-	RAMPAGE_only	2	2	7	0.129905	2.584963	chrX	85224041	85224309	LTR|ERVL-MaLR|MLT1C	-	chrX	85092310	85243779	SATL1|ENST00000646118.1	-	85092310,85093184,85094127,85094915,85103863,85107327,85116107,85117283,85117490,85142609,85142840,85224204,85243587	85092561,85093225,85094229,85094996,85103915,85109280,85116214,85117404,85117548,85142762,85143018,85224326,85243779	0.857143
neural_cell	chr3	33446575	33446610	33446609	+	High_confidence	2282	2577	5684	105.482717	5.288563	chr3	33446461	33447026	LTR|ERV1|LTR12C	+	chr3	33446596	33455317	MSTRG.14537.1	+	33446596,33453035	33447137,33455317	0.978888
neural_cell	chr1	32395395	32395396	32395395	-	High_confidence	5	5	7	0.129905	2.521641	chr1	32395124	32395608	LINE|L2|L2a	+	chr1	32378762	32394731	BSDC1|ENST00000474414.5	-	32378762,32381213,32383829,32386778,32394079	32378839,32381268,32383906,32386895,32394731	0.857143
neural_cell	chr11	43918864	43918917	43918916	+	High_confidence	4	4	21	0.389714	3.975418	chr11	43918742	43918963	SINE|MIR|MIR	-	chr11	43918803	43920266	ALKBH3|ENST00000529434.1	+	43918803,43919917	43919136,43920266	0.809524
neural_cell	chr19	49867876	49867885	49867884	-	High_confidence	3	3	7	0.129905	2.584963	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49861203	49867886	PNKP|ENST00000322344.7	-	49861203,49861448,49861607,49861771,49862043,49862184,49862370,49862537,49862689,49863688,49863963,49864178,49864323,49865126,49866398,49867053,49867468	49861365,49861510,49861695,49861881,49862105,49862281,49862463,49862608,49862738,49863760,49864071,49864236,49864403,49865426,49866445,49867217,49867886	0.571429
neural_cell	chr11	746791	746802	746791	+	High_confidence	3	7	15	0.278367	3.189898	chr11	746778	746843	LINE|L1|L1M5	+	chr11	747328	765024	TALDO1|ENST00000319006.7	+	747328,755878,758949,760121,763343,763746,764287,764812	747578,756002,759057,760253,763519,763944,764433,765024	0.800000
neural_cell	chr3	78791746	78791767	78791746	-	RAMPAGE_only	2	2	9	0.167020	3.000000	chr3	78791660	78791805	SINE|MIR|MIRc	+	chr3	78598810	79018544	ROBO1|ENST00000467549.5	-	78598810,78600112,78606732,78614647,78617634,78627320,78631160,78633934,78635772,78639743,78646147,78651731,78657097,78659685,78661029,78661992,78667882,78668133,78668483,78670095,78685745,78688647,78693347,78714396,78717274,78717762,78746742,78938600,79018406	78598927,78600309,78607041,78614800,78618041,78627569,78631305,78634042,78635943,78639898,78646190,78651929,78657269,78659807,78661261,78662114,78668049,78668302,78668565,78670301,78685917,78688772,78693356,78714524,78717413,78717883,78746900,78938927,79018544	0.777778
neural_cell	chr7	6044569	6044580	6044569	-	RAMPAGE_only	4	4	9	0.167020	2.947703	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6040958	6046902	EIF2AK1|ENST00000495565.5	-	6040958,6042932,6044561,6046070,6046776	6041219,6042993,6044661,6046151,6046902	0.555556
neural_cell	chr1	225809912	225809929	225809912	+	High_confidence	1	1	7	0.129905	2.584963	chr1	225809839	225809942	DNA|hAT-Charlie|MER5C	-	chr1	225810073	225845563	EPHX1|NM_001136018.3	+	225810073,225828724,225831778,225838653,225839216,225839828,225842365,225844497,225845145	225810169,225828912,225831959,225838881,225839346,225840037,225842474,225844623,225845563	0.857143
neural_cell	chr10	74588746	74588795	74588758	+	RAMPAGE_only	14	14	64	1.187701	5.020698	chr10	74588039	74588932	LINE|L1|L1MC5a	-	chr10	74176685	74709303	ADK|ENST00000372734.3	+	74176685,74200763,74224537,74314666,74394140,74398470,74525255,74589281,74600378,74670182,74708320	74176886,74200838,74224591,74314745,74394313,74398579,74525426,74589317,74600493,74670269,74709303	0.968750
neural_cell	chr21	45289414	45289430	45289414	+	RAMPAGE_only	3	3	8	0.148463	2.750000	chr21	45289210	45290050	LTR|ERV1|MER4D1	-	chr21	45288061	45297354	LINC00205|ENST00000647108.1	+	45288061,45289350,45290470,45296201	45288165,45289438,45293522,45297354	1.000000
neural_cell	chr19	9140390	9140428	9140393	+	High_confidence	112	112	472	8.759297	6.450047	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.845339
neural_cell	chr12	113773650	113773651	113773650	-	High_confidence	9	9	13	0.241252	3.251629	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113745703	113773663	LINC01234|ENST00000550223.5	-	113745703,113767074,113773614	113746595,113767208,113773663	0.692308
neural_cell	chr19	34860472	34860473	34860472	-	RAMPAGE_only	4	4	7	0.129905	2.521641	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34816153	34832869	LOC400685|NR_033982.1	-	34816153,34818586,34829163,34830405,34832329,34832724	34817490,34818766,34829253,34830526,34832536,34832869	0.857143
neural_cell	chr19	20661835	20661836	20661835	+	RAMPAGE_only	7	9	9	0.167020	3.169925	chr19	20661801	20662127	LTR|ERV1|MER57A-int	-	chr19	20674922	20696533	AC010329.5|ENST00000623497.1	+	20674922,20678624,20691339,20695233	20675043,20678720,20691996,20696533	0.555556
neural_cell	chr11	123061161	123061257	123061245	-	High_confidence	4	6	55	1.020681	5.070098	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.909091
neural_cell	chr6	147131952	147131986	147131985	-	RAMPAGE_only	216	222	842	15.625694	7.113717	chr6	147131896	147132081	DNA|DNA|UCON78	+	chr6	146842565	147204540	STXBP5-AS1|ENST00000427394.5	-	146842565,146844318,146850824,146860617,146972044,147001440,147074804,147119416,147173592,147173814,147204412	146842809,146844712,146851331,146860743,146972070,147001543,147074847,147119477,147173647,147173948,147204540	0.603325
neural_cell	chr15	80136993	80137024	80137011	+	RAMPAGE_only	5	6	25	0.463946	3.855389	chr15	80136824	80137018	SINE|MIR|MIR	-	chr15	80129599	80138379	ZFAND6|ENST00000557983.1	+	80129599,80137479	80131293,80138379	0.960000
neural_cell	chr14	49789498	49789499	49789498	-	RAMPAGE_only	5	5	8	0.148463	2.521641	chr14	49789398	49789451	LINE|L2|L2a	-	chr14	49784904	49787174	NEMF|ENST00000554275.1	-	49784904,49786717	49785320,49787174	0.500000
neural_cell	chr12	7137097	7137110	7137109	+	RAMPAGE_only	5	5	14	0.259810	3.039149	chr12	7137127	7137213	SINE|MIR|MIR1_Amn	+	chr12	7138681	7143198	CLSTN3|ENST00000544584.1	+	7138681,7141241,7142085,7142868,7143162	7138816,7141404,7142139,7143026,7143198	1.000000
neural_cell	chrX	134794076	134794077	134794076	-	RAMPAGE_only	11	11	11	0.204136	3.277613	chrX	134794054	134794302	DNA|hAT-Charlie|Charlie17a	+	chrX	134771573	134796274	FAM122B|ENST00000486347.5	-	134771573,134781820,134785885,134787471,134788729,134789084,134789222,134793814,134796107	134772283,134781917,134785950,134787533,134788831,134789139,134789266,134793893,134796274	1.000000
neural_cell	chr5	167721348	167721349	167721348	+	RAMPAGE_only	13	13	13	0.241252	3.392747	chr5	167721329	167721823	LTR|ERVL-MaLR|MLT1D	-	chr5	167754935	168264157	TENM2|ENST00000519204.5	+	167754935,167875985,167952587,167992943,168047426,168062059,168090573,168098025,168118291,168124849,168126753,168162610,168190336,168195175,168198852,168199863,168203688,168204371,168211733,168215039,168216767,168218124,168226087,168227894,168244419,168246756,168260282,168262048	167755192,167876195,167952822,167993182,168047549,168062265,168090769,168098127,168118486,168125050,168126966,168162757,168190547,168195295,168199114,168200131,168203832,168204621,168211754,168215272,168216922,168218999,168226263,168228130,168244716,168248371,168260413,168264157	0.538462
neural_cell	chr15	90234522	90234523	90234522	-	High_confidence	10	10	10	0.185578	3.121928	chr15	90234522	90234657	SINE|MIR|MIRb	-	chr15	90230244	90234155	CIB1|NR_102427.1	-	90230244,90230933,90231094,90231356,90232218,90233668,90233918	90230505,90231022,90231213,90231507,90232327,90233703,90234155	0.900000
neural_cell	chr6	145815164	145815168	145815164	+	High_confidence	3	4	7	0.129905	2.521641	chr6	145815053	145815170	SINE|MIR|MIR3	-	chr6	145815297	145855086	AL356599.1|ENST00000587426.5	+	145815297,145828360,145854601	145815431,145828456,145855086	0.714286
neural_cell	chr8	25423464	25423492	25423464	-	High_confidence	2	2	12	0.222694	3.095795	chr8	25423457	25423558	SINE|MIR|MIRc	-	chr8	25419259	25424231	GNRH1|ENST00000421054.6	-	25419259,25421572,25423189,25424200	25419460,25421668,25423331,25424231	0.916667
neural_cell	chr4	184537549	184537567	184537553	-	High_confidence	21	35	118	2.189824	5.077673	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.771186
neural_cell	chr9	39810033	39810118	39810033	-	High_confidence	9	9	44	0.816545	4.951147	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.772727
neural_cell	chr2	70257706	70257720	70257706	+	High_confidence	49	53	77	1.428953	5.064899	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.974026
neural_cell	chr3	57197112	57197125	57197112	+	RAMPAGE_only	2	2	6	0.111347	2.584963	chr3	57196989	57197284	SINE|Alu|AluYc	-	chr3	57227725	57278105	APPL1|ENST00000650354.1	+	57227725,57235565,57237491,57238044,57240464,57242100,57242855,57246075,57247394,57248192,57249359,57252268,57253681,57256956,57257245,57259027,57259844,57260116,57260627,57267741,57268397,57269540,57276303,57277792	57227937,57235664,57237551,57238116,57240552,57242142,57242914,57246222,57247477,57248351,57249548,57252311,57253738,57257051,57257428,57259080,57260019,57260153,57260774,57267792,57268487,57269751,57276459,57278105	0.666667
neural_cell	chr22	50756826	50756841	50756835	+	High_confidence	4	4	15	0.278367	3.378783	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.733333
neural_cell	chr7	87040144	87040176	87040175	-	High_confidence	5	8	27	0.501061	3.633974	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86880015	87040227	MSTRG.19162.3	-	86880015,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,86947726,86964903,87039755	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,86947922,86965024,87040227	0.962963
neural_cell	chr16	75376713	75376746	75376726	-	RAMPAGE_only	37	37	139	2.579539	5.468714	chr16	75376668	75377149	LTR|ERV1|MER66B	+	chr16	75293905	75363035	CFDP1|ENST00000564793.1	-	75293905,75305023,75362874	75294042,75305182,75363035	0.625899
neural_cell	chr20	50130101	50130128	50130101	-	RAMPAGE_only	2	2	10	0.185578	3.121928	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	1.000000
neural_cell	chr11	92627797	92627897	92627884	+	RAMPAGE_only	20	20	186	3.451757	6.244962	chr11	92627898	92628128	SINE|MIR|MIRb	+	chr11	92355185	92896305	MSTRG.3823.5	+	92355185,92423163,92524633,92697383,92761855,92764878,92765506,92774040,92789942,92792766,92797835,92805152,92806361,92809842,92831621,92834869,92836565,92837662,92840561,92843933,92857213,92859164,92866740,92880730,92882737,92886999,92889188,92889855,92890490	92355404,92423346,92524948,92697445,92762170,92765089,92765575,92774180,92790218,92792977,92801909,92805349,92806515,92810076,92832011,92835084,92836703,92837806,92840759,92844732,92857348,92859322,92867209,92880884,92883393,92887113,92889248,92889891,92896305	0.763441
neural_cell	chr19	12800915	12800945	12800944	-	High_confidence	11	13	24	0.445388	3.879664	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.916667
neural_cell	chr1	1879903	1879904	1879903	-	RAMPAGE_only	16	17	17	0.315483	3.577820	chr1	1879727	1879914	DNA|hAT-Charlie|Charlie1	-	chr1	1793244	1890401	GNB1|ENST00000434686.6	-	1793244,1804418,1806474,1815755,1817836,1825396,1839189,1839628,1890363	1793311,1804581,1806538,1815862,1817875,1825499,1839238,1839682,1890401	0.823529
neural_cell	chr3	193614814	193614815	193614814	+	High_confidence	4	4	7	0.129905	2.521641	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.857143
neural_cell	chr5	115296269	115296280	115296269	-	High_confidence	5	5	12	0.222694	3.418296	chr5	115296013	115296236	SINE|MIR|MIRb	-	chr5	115267638	115296268	CCDC112|ENST00000395557.4	-	115267638,115268881,115269702,115271212,115275215,115275993,115276964,115279646,115284786,115295909	115267918,115269000,115269798,115271626,115275606,115276069,115277054,115279768,115284908,115296268	0.750000
neural_cell	chr7	2242922	2242923	2242922	+	High_confidence	45	45	45	0.835102	4.535863	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
neural_cell	chr16	67571156	67571178	67571156	+	High_confidence	4	4	14	0.259810	2.931209	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.928571
neural_cell	chr2	95121537	95121604	95121553	-	High_confidence	15	15	95	1.762994	6.041135	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.831579
neural_cell	chr7	94918289	94918293	94918289	+	RAMPAGE_only	2	3	7	0.129905	2.584963	chr7	94918241	94918395	LINE|CR1|L3	-	chr7	94910082	95290364	PPP1R9A|ENST00000289495.7	+	94910082,95111258,95120711,95161866,95198348,95225960,95247472,95250025,95251761,95251958,95268549,95269260,95273898,95274084,95284017,95286205,95288535,95290090	94911508,95111391,95120832,95161971,95198484,95226116,95247526,95250255,95251858,95252130,95268707,95269507,95273986,95274168,95284216,95286325,95288718,95290364	0.714286
neural_cell	chr19	51354788	51354842	51354788	-	High_confidence	334	354	1987	36.874412	5.883034	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.995974
neural_cell	chr1	20639966	20639968	20639966	+	RAMPAGE_only	6	8	12	0.222694	3.022055	chr1	20640002	20640112	LINE|L2|L2b	+	chr1	20638128	20651316	PINK1|ENST00000492302.1	+	20638128,20644489,20645559,20648504,20650433	20639992,20644672,20645723,20649231,20651316	1.000000
neural_cell	chrX	110445190	110445224	110445223	+	RAMPAGE_only	9	9	38	0.705198	2.760993	chrX	110445166	110445432	SINE|MIR|MIRb	+	chrX	110450564	110456326	RTL9|ENST00000540313.1	+	110450564,110455201	110454664,110456326	1.000000
neural_cell	chr11	57568132	57568162	57568132	-	High_confidence	13	13	25	0.463946	4.142915	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	0.920000
neural_cell	chr3	112332567	112332575	112332572	+	High_confidence	14	19	34	0.630966	4.513795	chr3	112332311	112332606	SINE|Alu|AluY	+	chr3	112332840	112335996	CD200|ENST00000607516.1	+	112332840,112335825	112333224,112335996	0.500000
neural_cell	chr6	31053448	31053449	31053448	+	High_confidence	11	14	17	0.315483	4.000000	chr6	31053266	31053607	LTR|ERVL-MaLR|THE1A	+	chr6	31053449	31059890	HCG22|NR_003948.2	+	31053449,31054099,31055709,31059407	31053531,31054516,31056910,31059890	0.882353
neural_cell	chr5	70401467	70401479	70401478	+	RAMPAGE_only	4	4	13	0.241252	3.546594	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70719844	70795914	MSTRG.16819.4	+	70719844,70749576,70751076,70785437,70789207,70791131,70795780	70720033,70749610,70751232,70785625,70789292,70791306,70795914	0.538462
neural_cell	chr1	161133505	161133527	161133517	+	RAMPAGE_only	5	8	19	0.352599	3.836592	chr1	161133305	161133568	LINE|L2|L2	-	chr1	161152775	161158199	UFC1|ENST00000467540.5	+	161152775,161153353,161153925,161156949,161157253,161157616,161158120	161152991,161153457,161154120,161157017,161157317,161157693,161158199	0.526316
neural_cell	chr19	46530311	46530326	46530319	-	RAMPAGE_only	3	3	10	0.185578	3.121928	chr19	46530185	46530438	LINE|L2|L2b	+	chr19	46525475	46600931	PPP5D1|ENST00000593359.2	-	46525475,46526924,46600882	46525784,46527072,46600931	0.500000
neural_cell	chr22	50785206	50785240	50785210	+	RAMPAGE_only	3	3	23	0.426830	3.970573	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.869565
neural_cell	chr11	8658869	8658886	8658878	-	High_confidence	24	38	108	2.004246	6.166533	chr11	8658830	8658957	DNA|DNA|MER126	-	chr11	8612036	8658836	TRIM66|ENST00000299550.10	-	8612036,8618749,8619382,8620049,8620445,8621031,8621644,8622815,8624358,8624708,8638653,8640226,8643008,8645740,8646446,8647969,8648415,8649739,8651799,8658736	8618003,8618968,8619535,8620124,8620572,8621321,8621819,8622876,8624454,8625228,8638815,8641152,8643126,8645887,8646561,8648086,8648548,8649887,8651903,8658836	0.759259
neural_cell	chr3	71728553	71728562	71728553	-	High_confidence	5	5	10	0.185578	2.725481	chr3	71728377	71728554	SINE|MIR|MIR3	-	chr3	71684619	71728637	EIF4E3|ENST00000468147.5	-	71684619,71690009,71693874,71710411,71728475	71684728,71690165,71693941,71710484,71728637	0.600000
neural_cell	chr22	21567580	21567595	21567588	+	High_confidence	3	3	8	0.148463	3.000000	chr22	21567525	21567629	LINE|L2|L2b	+	chr22	21567546	21624034	UBE2L3|NM_001256356.1	+	21567546,21610856,21621514	21567771,21611043,21624034	1.000000
neural_cell	chr10	45075976	45075977	45075976	-	RAMPAGE_only	7	7	10	0.185578	2.846439	chr10	45075957	45076153	DNA|hAT-Tip100|MamTip2	-	chr10	44997697	45000910	C10orf25|NM_001039380.3	-	44997697,45000529	45000416,45000910	0.500000
neural_cell	chrX	119593151	119593152	119593151	-	High_confidence	14	14	14	0.259810	3.182006	chrX	119592669	119593330	LINE|L1|L1MC5a	+	chrX	119588336	119593150	NKRF|NM_001173488.1	-	119588336,119592382	119591309,119593150	1.000000
neural_cell	chr5	32403105	32403106	32403105	-	RAMPAGE_only	7	7	9	0.167020	2.641604	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
neural_cell	chr7	111940131	111940209	111940146	-	RAMPAGE_only	4	4	29	0.538177	3.179669	chr7	111940063	111940135	LINE|RTE-BovB|MamRTE1	-	chr7	111728273	112004131	DOCK4|ENST00000445943.5	-	111728273,111732225,111735053,111736916,111739133,111739395,111741093,111741539,111742012,111746333,111747266,111755514,111758623,111760180,111765117,111767031,111769528,111778275,111782863,111783856,111784096,111788661,111790456,111808820,111809300,111811873,111822361,111834587,111840762,111844762,111846998,111863371,111867983,111869573,111871989,111872268,111872466,111877029,111895611,111900373,111901676,111915778,111935539,111940109,111944810,111945716,111977131,111984305,111989014,111994134,111998447,112000493,112004047	111728720,111732287,111735167,111736989,111739243,111739477,111741214,111741661,111742132,111746417,111747443,111755601,111758790,111760322,111765222,111767118,111769677,111778369,111782924,111783952,111784123,111788747,111790605,111808879,111809401,111811949,111822456,111834686,111840870,111844897,111847126,111863564,111868154,111869655,111872090,111872352,111872564,111877186,111895718,111900536,111901801,111915904,111935628,111940242,111944871,111945798,111977283,111984390,111989163,111994231,111998503,112000534,112004131	1.000000
neural_cell	chr1	86703112	86703119	86703112	+	RAMPAGE_only	5	5	11	0.204136	3.095795	chr1	86702882	86703173	SINE|Alu|AluSz	+	chr1	86704569	86748184	SH3GLB1|NM_016009.4	+	86704569,86715723,86719506,86722539,86724312,86734601,86735078,86742207,86743127	86704971,86715865,86719635,86722673,86724405,86734691,86735179,86742436,86748184	0.909091
neural_cell	chr5	32505878	32505922	32505907	+	RAMPAGE_only	4	4	16	0.296925	3.577820	chr5	32505649	32506189	LTR|ERVL-MaLR|MLT1K	+	chr5	32531632	32601323	SUB1|ENST00000506237.5	+	32531632,32588511,32591562,32598960,32601004	32531916,32588584,32591685,32599069,32601323	0.500000
neural_cell	chr5	138880196	138880197	138880196	-	RAMPAGE_only	33	33	33	0.612408	3.771667	chr5	138880161	138880436	SINE|Alu|AluJb	-	chr5	138872631	138875368	LRRTM2|ENST00000518785.1	-	138872631,138874907	138874128,138875368	0.939394
neural_cell	chr15	80115068	80115069	80115068	+	RAMPAGE_only	13	13	13	0.241252	2.565448	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	1.000000
neural_cell	chr6	152717584	152717585	152717584	+	RAMPAGE_only	7	7	9	0.167020	2.947703	chr6	152717403	152717757	LTR|ERVL-MaLR|THE1B	+	chr6	152697960	152724501	MYCT1|ENST00000532295.1	+	152697960,152721741,152722762	152698098,152722253,152724501	0.777778
neural_cell	chr9	33068829	33068839	33068829	-	RAMPAGE_only	3	4	10	0.185578	2.947703	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.900000
neural_cell	chr9	120471793	120471834	120471823	-	RAMPAGE_only	2	2	9	0.167020	3.000000	chr9	120471770	120471851	LINE|L2|L2	+	chr9	120389195	120580005	CDK5RAP2|ENST00000480112.5	-	120389195,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120460571,120467859,120470110,120471747,120477349,120487293,120491306,120518426,120524985,120527805,120528743,120529977,120536371,120539040,120545713,120550791,120568320,120571976,120579919	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120460747,120467997,120470220,120471878,120477450,120487437,120491477,120518645,120525078,120527925,120528797,120530140,120536526,120539164,120545790,120550902,120568388,120572041,120580005	0.888889
neural_cell	chr13	24968346	24968477	24968471	-	High_confidence	52	56	363	6.736493	7.033221	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24933005	24968453	TPTE2P1|ENST00000649209.1	-	24933005,24937576,24940506,24941986,24942931,24951396,24951594,24961748,24967391,24968205	24934663,24937770,24940785,24942108,24943021,24951488,24951770,24961849,24967453,24968453	0.531680
neural_cell	chr12	15001766	15001787	15001766	+	High_confidence	4	4	12	0.222694	3.277613	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.500000
neural_cell	chr19	37465347	37465350	37465349	-	RAMPAGE_only	4	5	8	0.148463	2.807355	chr19	37464765	37465454	LINE|L2|L2a	+	chr19	37411154	37467229	ZNF569|ENST00000392149.6	-	37411154,37425867,37426251,37444906,37467086	37414419,37425963,37426378,37444964,37467229	0.750000
neural_cell	chr6	30326188	30326223	30326205	-	High_confidence	7	8	40	0.742313	4.784516	chr6	30326146	30326284	LINE|L2|L2b	-	chr6	30291005	30326334	HCG18|ENST00000444126.5	-	30291005,30296131,30314268,30326008	30294964,30296237,30314482,30326334	0.575000
neural_cell	chr11	66438593	66438607	66438593	-	High_confidence	7	8	27	0.501061	4.162295	chr11	66438453	66438566	SINE|MIR|MIR	-	chr11	66435837	66438826	MRPL11|ENST00000534488.5	-	66435837,66437103,66437349,66438163,66438631	66436112,66437263,66437435,66438259,66438826	0.851852
neural_progenitor_cell_derived_from_H9	chr2	159428356	159428373	159428372	-	RAMPAGE_only	4	4	10	0.925221	2.921928	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159400598	159419867	BAZ2B|ENST00000482501.5	-	159400598,159404848,159405021,159412334,159419779	159400664,159404910,159405114,159412545,159419867	0.500000
neural_progenitor_cell_derived_from_H9	chr5	117454948	117454953	117454949	+	High_confidence	15	20	39	3.608361	4.879506	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.692308
neural_progenitor_cell_derived_from_H9	chr11	67620862	67620865	67620862	-	High_confidence	23	23	36	3.330795	3.497526	chr11	67620425	67625693	LTR|ERV1|HERV9NC-int	+	chr11	67618912	67620851	MSTRG.8447.1	-	67618912	67620851	0.777778
neural_progenitor_cell_derived_from_H9	chr5	27477661	27477747	27477697	+	RAMPAGE_only	3	3	24	2.220530	3.675311	chr5	27477542	27477973	LTR|ERV1|MER61C	+	chr5	27472306	27486146	MSTRG.40148.4	+	27472306,27475534,27479301	27472519,27479171,27486146	0.958333
neural_progenitor_cell_derived_from_H9	chr5	34244811	34244816	34244811	-	High_confidence	5	5	14	1.295309	3.235926	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	33987173	34244808	MSTRG.40202.2	-	33987173,33998640,34005755,34020586,34023908,34028753,34033303,34035646,34124417,34169026,34175444,34175821,34179012,34182679,34218294,34244615	33989502,33998827,34005899,34020742,34024008,34028883,34033458,34035758,34124528,34169145,34175537,34175957,34179097,34182867,34218450,34244808	0.714286
neural_progenitor_cell_derived_from_H9	chr3	39154613	39154631	39154630	-	High_confidence	5	5	13	1.202787	2.855389	chr3	39154504	39154649	LINE|L2|L2c	+	chr3	39141850	39154602	CSRNP1|NM_001320560.1	-	39141850,39144136,39144996,39146477,39154496	39144044,39144451,39145256,39146722,39154602	0.692308
neural_progenitor_cell_derived_from_H9	chr2	217756560	217756609	217756560	-	High_confidence	9	10	96	8.882119	5.336880	chr2	217756466	217756533	SINE|MIR|MIR3	-	chr2	217284022	217756593	DIRC3|NR_026597.1	-	217284022,217317965,217318919,217325845,217327996,217425301,217426590,217427390,217432922,217433947,217478380,217599611,217756467	217284863,217318201,217319177,217325970,217328152,217425522,217426786,217427473,217433021,217434116,217478558,217600829,217756593	0.708333
neural_progenitor_cell_derived_from_H9	chr3	27821518	27821597	27821538	+	RAMPAGE_only	98	121	691	63.932751	5.806662	chr3	27815983	27821983	LINE|L1|L1PA7	-	chr3	27802761	27860327	LINC01980|ENST00000425195.6	+	27802761,27824649,27848700,27860086	27802850,27824748,27848764,27860327	0.905933
neural_progenitor_cell_derived_from_H9	chr1	113758044	113758085	113758081	-	RAMPAGE_only	4	4	16	1.480353	3.750000	chr1	113758040	113758255	SINE|Alu|AluSq2	+	chr1	113697201	113759155	PHTF1|ENST00000393357.6	-	113697201,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113759155	0.812500
neural_progenitor_cell_derived_from_H9	chr1	235670126	235670129	235670126	+	High_confidence	6	6	10	0.925221	2.646439	chr1	235670103	235670445	LTR|ERV1|LTR10B2	+	chr1	235670286	235711139	MSTRG.4596.1	+	235670286,235710642	235670650,235711139	0.800000
neural_progenitor_cell_derived_from_H9	chr15	49396360	49396429	49396370	-	High_confidence	51	56	237	21.927731	6.372254	chr15	49395983	49402014	LINE|L1|L1PA2	+	chr15	49328451	49396436	MSTRG.16980.4	-	49328451,49331779,49371301,49395974,49396266	49328675,49331849,49371399,49396097,49396436	0.864979
neural_progenitor_cell_derived_from_H9	chr3	134485414	134485456	134485455	-	High_confidence	8	8	26	2.405574	3.938722	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.846154
neural_progenitor_cell_derived_from_H9	chr4	75127183	75127299	75127271	-	RAMPAGE_only	45	45	245	22.667907	5.261290	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.934694
neural_progenitor_cell_derived_from_H9	chr15	97296067	97296122	97296075	+	High_confidence	6	6	22	2.035486	3.499228	chr15	97289925	97296313	LINE|L1|L1PA3	-	chr15	97295880	97432094	MSTRG.18341.2	+	97295880,97411191,97429769	97296323,97411278,97432094	0.545455
neural_progenitor_cell_derived_from_H9	chr11	15552739	15552773	15552750	+	High_confidence	123	137	295	27.294011	6.864288	chr11	15551450	15553107	LINE|L1|L1MC3	-	chr11	15552694	15589349	MSTRG.7453.2	+	15552694,15561877,15585707,15588546	15552913,15562228,15585802,15589349	0.667797
neural_progenitor_cell_derived_from_H9	chr10	56155104	56155164	56155104	-	High_confidence	4	4	28	2.590618	4.162295	chr10	56154938	56156388	LTR|ERV1|LTR12C	+	chr10	56151895	56154951	MSTRG.5549.1	-	56151895,56154831	56151995,56154951	0.607143
neural_progenitor_cell_derived_from_H9	chr8	89535617	89535646	89535617	-	High_confidence	11	13	27	2.498096	4.102679	chr8	89535240	89541269	LINE|L1|L1PA2	+	chr8	89496150	89535646	MSTRG.50885.1	-	89496150,89533572,89534444	89497512,89533633,89535646	0.851852
neural_progenitor_cell_derived_from_H9	chr1	6200609	6200658	6200657	-	High_confidence	73	82	297	27.479055	3.788496	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.979798
neural_progenitor_cell_derived_from_H9	chr4	89681469	89681505	89681504	+	RAMPAGE_only	173	211	288	26.646356	6.639102	chr4	89681260	89681677	LTR|ERV1|MER61C	+	chr4	89627783	89720172	AC097478.1|ENST00000507916.6	+	89627783,89691284,89719825	89627917,89691405,89720172	0.562500
neural_progenitor_cell_derived_from_H9	chr20	18794077	18794086	18794077	+	High_confidence	19	19	39	3.608361	4.436186	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
neural_progenitor_cell_derived_from_H9	chr7	121511111	121511225	121511111	-	High_confidence	85	89	573	53.015146	7.706028	chr7	121510991	121511453	LTR|ERV1|LTR10B2	-	chr7	121445807	121511254	MSTRG.48408.7	-	121445807,121510775,121511037	121451193,121510953,121511254	0.558464
neural_progenitor_cell_derived_from_H9	chr18	12419995	12420053	12420026	+	High_confidence	5	5	20	1.850441	3.892407	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12420016	12429364	PRELID3A|ENST00000587862.5	+	12420016,12420324,12421539,12427040,12427220,12429349	12420148,12420493,12421629,12427111,12427323,12429364	0.550000
neural_progenitor_cell_derived_from_H9	chr6	79631273	79631329	79631302	+	High_confidence	75	75	261	24.148260	5.974472	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.996169
neural_progenitor_cell_derived_from_H9	chrX	97310578	97310613	97310612	+	High_confidence	115	195	577	53.385235	6.415907	chrX	97310220	97310731	LINE|L2|L2a	-	chrX	97310549	97604997	MSTRG.55050.9	+	97310549,97348080,97383908,97429649,97599252	97310658,97348280,97384044,97429745,97604997	0.908146
neural_progenitor_cell_derived_from_H9	chr5	67818379	67818400	67818379	-	High_confidence	7	8	16	1.480353	3.106891	chr5	67817944	67823959	LINE|L1|L1PA3	+	chr5	67636874	67818397	MSTRG.40590.1	-	67636874,67697020,67699397,67701490,67817939	67636948,67697211,67699725,67701652,67818397	0.750000
neural_progenitor_cell_derived_from_H9	chr12	103434798	103434829	103434828	-	RAMPAGE_only	4	4	15	1.387831	3.467720	chr12	103434388	103440411	LINE|L1|L1PA2	+	chr12	103237590	103495968	C12orf42|ENST00000547347.5	-	103237590,103263325,103267633,103267852,103269806,103273791,103277149,103368886,103401606,103478348,103495901	103237902,103263371,103267708,103268962,103269853,103273883,103277210,103368998,103401675,103478447,103495968	0.533333
neural_progenitor_cell_derived_from_H9	chr11	4129081	4129136	4129133	+	RAMPAGE_only	3	3	14	1.295309	3.334679	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.928571
neural_progenitor_cell_derived_from_H9	chr18	39800271	39800314	39800293	-	High_confidence	17	17	89	8.234464	5.843546	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.719101
neural_progenitor_cell_derived_from_H9	chr10	67387433	67387512	67387433	-	RAMPAGE_only	9	10	49	4.533581	4.734722	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	66069293	67231094	MSTRG.5602.3	-	66069293,66103156,66280469,66379151,66520616,66621691,66766263,66775443,67180316,67219606,67230921	66069489,66103249,66280621,66379352,66520773,66621784,66766416,66775524,67180520,67219870,67231094	0.571429
neural_progenitor_cell_derived_from_H9	chr3	110969940	110969992	110969940	-	High_confidence	3	3	15	1.387831	3.640224	chr3	110969731	110970304	LTR|ERV1|LTR10C	-	chr3	110960400	110969949	MSTRG.35643.7	-	110960400,110963332	110963305,110969949	0.866667
neural_progenitor_cell_derived_from_H9	chr1	23403969	23403988	23403987	-	RAMPAGE_only	4	6	8	0.740177	2.521641	chr1	23403928	23404035	LINE|RTE-BovB|MamRTE1	+	chr1	23381060	23424740	TCEA3|ENST00000450454.6	-	23381060,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23381474,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424740	0.875000
neural_progenitor_cell_derived_from_H9	chr6	118651592	118651605	118651596	-	High_confidence	3	4	10	0.925221	3.169925	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.900000
neural_progenitor_cell_derived_from_H9	chr4	127655829	127655862	127655861	+	RAMPAGE_only	5	5	23	2.128008	3.729446	chr4	127650220	127656245	LINE|L1|L1PA2	-	chr4	127632965	127716479	INTU|ENST00000503952.5	+	127632965,127643520,127656635,127663380,127669035,127674123,127684408,127685441,127687740,127700009,127704227,127705590,127706486,127708570,127710912,127713935,127716324	127633180,127644056,127656721,127663584,127669154,127674213,127684486,127685569,127687867,127700063,127704290,127705812,127706969,127708668,127711102,127714093,127716479	0.869565
neural_progenitor_cell_derived_from_H9	chr5	134613060	134613126	134613096	-	RAMPAGE_only	38	39	131	12.120391	3.507233	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606429	134614903	SAR1B|ENST00000508363.5	-	134606429,134608371,134609570,134612690	134607066,134608503,134609674,134614903	0.992366
neural_progenitor_cell_derived_from_H9	chr1	6208681	6208682	6208681	-	High_confidence	64	64	64	5.921412	3.261036	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186614	6208701	MSTRG.219.10	-	6186614,6192929,6197651,6200488,6208680	6186816,6193054,6197756,6200750,6208701	1.000000
neural_progenitor_cell_derived_from_H9	chr5	127739501	127739532	127739516	+	High_confidence	2	2	10	0.925221	2.947703	chr5	127733931	127739952	LINE|L1|L1PA2	-	chr5	127739537	127740287	CCDC192|ENST00000506670.1	+	127739537,127739842	127739611,127740287	0.600000
neural_progenitor_cell_derived_from_H9	chr3	110969835	110969836	110969835	-	High_confidence	377	385	416	38.489181	6.639650	chr3	110969731	110970304	LTR|ERV1|LTR10C	-	chr3	110960400	110969949	MSTRG.35643.7	-	110960400,110963332	110963305,110969949	0.939904
neural_progenitor_cell_derived_from_H9	chr17	60887005	60887071	60887070	+	High_confidence	13	14	87	8.049420	5.638992	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.574713
neural_progenitor_cell_derived_from_H9	chr3	101466869	101466875	101466871	-	RAMPAGE_only	3	4	9	0.832699	2.750000	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.888889
neural_progenitor_cell_derived_from_H9	chr10	52036978	52037033	52037006	+	RAMPAGE_only	2	2	11	1.017743	3.121928	chr10	52036080	52039110	LTR|ERV1|HERVH-int	-	chr10	52046866	52294176	PRKG1|ENST00000373975.3	+	52046866,52054483,52062536,52081596,52133839,52161888,52251569,52271349,52272391,52280788,52282152,52288725,52288930,52290223,52293801	52046926,52054561,52062631,52081657,52133905,52161963,52251666,52271489,52272481,52280930,52282316,52288848,52288993,52290290,52294176	0.727273
neural_progenitor_cell_derived_from_H9	chr22	30975225	30975323	30975304	+	RAMPAGE_only	5	6	43	3.978449	3.941417	chr22	30975231	30975411	DNA|hAT-Charlie|Charlie15a	-	chr22	30972262	30976063	TUG1|ENST00000602393.1	+	30972262,30975169	30973601,30976063	0.976744
neural_progenitor_cell_derived_from_H9	chr12	31121301	31121338	31121301	-	High_confidence	157	174	388	35.898563	5.690625	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111656	31121363	MSTRG.10554.2	-	31111656,31112980,31114395,31114836,31116356,31117419,31120270	31112288,31113083,31114464,31114927,31116469,31119478,31121363	0.951031
neural_progenitor_cell_derived_from_H9	chr13	95740371	95740376	95740371	+	RAMPAGE_only	6	6	12	1.110265	3.251629	chr13	95733699	95740837	LINE|L1|L1PA2	-	chr13	95677157	95794989	MSTRG.13573.2	+	95677157,95709226,95723241,95725177,95757643,95760039,95760678,95763642,95763832,95785938,95787006,95790872,95793384	95677337,95709337,95723366,95725252,95757796,95760221,95760798,95763748,95763953,95786071,95787155,95793363,95794989	0.833333
neural_progenitor_cell_derived_from_H9	chrX	131578892	131578923	131578892	-	High_confidence	3	3	9	0.832699	2.725481	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.777778
neural_progenitor_cell_derived_from_H9	chr1	41306132	41306145	41306144	-	High_confidence	14	17	41	3.793405	5.064869	chr1	41305850	41306330	LTR|ERVL|LTR33A_	-	chr1	41302924	41306090	MSTRG.1228.1	-	41302924,41305841	41303972,41306090	0.682927
neural_progenitor_cell_derived_from_H9	chr8	143039246	143039267	143039266	+	High_confidence	5	5	13	1.202787	3.251629	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.692308
neural_progenitor_cell_derived_from_H9	chr1	153967486	153967504	153967503	+	High_confidence	6	6	20	1.850441	3.584184	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967838	153974364	CREB3L4|NM_001255978.1	+	153967838,153968521,153968929,153969333,153972743,153972971,153973194,153973379,153973619,153973871	153968164,153968699,153969176,153969455,153972836,153973078,153973263,153973464,153973716,153974364	0.700000
neural_progenitor_cell_derived_from_H9	chr2	113656591	113656634	113656591	-	RAMPAGE_only	2	2	13	1.202787	3.085055	chr2	113656151	113657874	LINE|L1|L1PA4	+	chr2	113611238	113627138	RPL23AP7|NR_024528.1	-	113611238,113625608,113626477,113626880	113612247,113625729,113626571,113627138	0.769231
neural_progenitor_cell_derived_from_H9	chr4	81154213	81154222	81154221	-	High_confidence	19	19	39	3.608361	4.599379	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.846154
neural_progenitor_cell_derived_from_H9	chr15	66502611	66502741	66502611	-	High_confidence	45	45	409	37.841527	6.213541	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.823961
neural_progenitor_cell_derived_from_H9	chr1	173637712	173637713	173637712	+	High_confidence	624	628	767	70.964428	7.751048	chr1	173637250	173637824	LTR|ERV1|LTR10C	+	chr1	173637715	173734217	MSTRG.3620.3	+	173637715,173660102,173716002,173733712	173640866,173671334,173716066,173734217	0.890482
neural_progenitor_cell_derived_from_H9	chr5	78457745	78457824	78457792	+	High_confidence	10	10	53	4.903670	4.414531	chr5	78452185	78458210	LINE|L1|L1PA2	-	chr5	78457792	78476829	SCAMP1|ENST00000506858.2	+	78457792,78459244,78475503	78457951,78459362,78476829	0.886792
neural_progenitor_cell_derived_from_H9	chr12	113773650	113773692	113773650	-	High_confidence	21	25	53	4.903670	5.103910	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113745703	113773663	LINC01234|ENST00000550223.5	-	113745703,113767074,113773614	113746595,113767208,113773663	0.547170
neural_progenitor_cell_derived_from_H9	chr3	43566267	43566292	43566291	-	RAMPAGE_only	3	3	9	0.832699	2.750000	chr3	43565822	43571847	LINE|L1|L1PA2	+	chr3	43366888	43555411	ANO10|ENST00000448045.1	-	43366888,43432610,43549719,43551471,43555277	43366974,43432727,43549848,43551588,43555411	0.666667
neural_progenitor_cell_derived_from_H9	chr15	34588450	34588453	34588450	-	RAMPAGE_only	16	28	43	3.978449	4.748995	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34379067	34583634	MSTRG.16507.4	-	34379067,34381700,34381967,34382150,34382385,34382796,34383440,34383745,34383960,34385047,34385253,34385426,34385739,34386624,34389643,34391122,34391352,34398633,34399154,34400711,34404916,34406673,34407523,34435382,34437397,34583543	34381613,34381856,34382068,34382251,34382529,34383053,34383528,34383853,34384047,34385157,34385338,34385474,34385778,34387952,34389768,34391265,34391426,34398729,34399203,34400759,34405055,34406870,34407735,34435471,34437442,34583634	0.697674
neural_progenitor_cell_derived_from_H9	chr7	87039792	87039798	87039797	-	High_confidence	9	10	22	2.035486	3.880180	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.681818
neural_progenitor_cell_derived_from_H9	chrX	153674319	153674335	153674319	-	High_confidence	3	3	8	0.740177	2.521641	chrX	153674234	153674570	LINE|L2|L2a	+	chrX	153669767	153674325	PNCK|ENST00000370142.5	-	153669767,153670449,153670743,153670917,153671077,153671284,153671552,153671879,153672125,153672565,153673008,153674273	153670130,153670594,153670831,153670996,153671190,153671433,153671672,153672018,153672200,153672697,153673078,153674325	0.625000
neural_progenitor_cell_derived_from_H9	chr16	72627651	72627662	72627661	-	High_confidence	6	8	16	1.480353	3.506891	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72427245	72627713	MSTRG.20038.5	-	72427245,72522552,72523331,72540577,72555264,72570450,72627534	72427457,72522623,72523415,72540611,72555326,72570515,72627713	0.750000
neural_progenitor_cell_derived_from_H9	chr3	54637678	54637719	54637711	+	RAMPAGE_only	3	3	18	1.665397	3.124844	chr3	54636818	54639750	LTR|ERV1|HERVH-int	-	chr3	54197370	54885586	CACNA2D3|ENST00000468658.1	+	54197370,54320441,54386714,54562799,54569794,54569953,54581802,54627786,54642127,54752598,54764217,54816852,54837158,54838567,54846392,54871538,54879017,54879349,54880795,54885280,54885488	54197507,54320558,54386774,54562931,54569855,54570104,54581877,54627876,54642241,54752677,54764351,54816870,54837230,54838648,54846467,54871622,54879089,54879411,54880863,54885326,54885586	0.722222
neural_progenitor_cell_derived_from_H9	chr5	90929166	90929271	90929166	+	High_confidence	14	14	116	10.732560	5.324306	chr5	90923630	90929658	LINE|L1|L1PA2	-	chr5	90929526	91072579	ADGRV1|ENST00000639707.1	+	90929526,90965414,90985343,91072446	90929661,90965531,90985522,91072579	0.655172
neural_progenitor_cell_derived_from_H9	chr6	3195772	3195779	3195772	-	High_confidence	44	44	74	6.846633	5.432643	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.986486
neural_progenitor_cell_derived_from_H9	chr2	197640373	197640384	197640373	+	High_confidence	11	11	21	1.942963	3.844233	chr2	197634735	197640761	LINE|L1|L1PA2	-	chr2	197640782	197643686	MSTRG.30288.1	+	197640782	197643686	0.666667
neural_progenitor_cell_derived_from_H9	chr12	9910811	9910863	9910835	-	High_confidence	4	6	16	1.480353	3.452820	chr12	9903201	9910908	LTR|ERV1|HERVI-int	-	chr12	9882647	9911022	MSTRG.10036.2	-	9882647,9902512	9902468,9911022	1.000000
neural_progenitor_cell_derived_from_H9	chr5	70401416	70401470	70401422	+	High_confidence	23	45	247	22.852951	6.297140	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70401429	70448015	MSTRG.40680.2	+	70401429,70415183,70417821,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70401668,70415389,70417919,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70448015	0.947368
neural_progenitor_cell_derived_from_H9	chr14	57112666	57112677	57112676	-	High_confidence	51	51	108	9.992384	5.153165	chr14	57112210	57118214	LINE|L1|L1PA2	+	chr14	57067007	57112660	AL391152.1|ENST00000551408.2	-	57067007,57112194	57067165,57112660	0.583333
neural_progenitor_cell_derived_from_H9	chr12	79045246	79045260	79045246	+	High_confidence	10	11	29	2.683140	4.323161	chr12	79039621	79045645	LINE|L1|L1PA2	-	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.931034
neural_progenitor_cell_derived_from_H9	chr7	11193317	11193366	11193365	+	High_confidence	9	10	34	3.145750	4.309101	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.676471
neural_progenitor_cell_derived_from_H9	chr2	187513641	187513653	187513652	-	High_confidence	32	38	65	6.013935	5.101704	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	0.753846
neural_progenitor_cell_derived_from_H9	chr19	48868595	48868637	48868613	-	High_confidence	120	140	595	55.050632	7.164820	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.993277
neural_progenitor_cell_derived_from_H9	chr11	75979577	75979636	75979616	+	High_confidence	12	12	97	8.974641	5.638055	chr11	75974665	75980018	LINE|L1|L1PA6	-	chr11	75979525	76142651	UVRAG|ENST00000531818.5	+	75979525,75983386,76004004,76007533,76008806,76016814,76065709,76115923,76140710	75980038,75983513,76004089,76007621,76008867,76016980,76065788,76116015,76142651	0.938144
neural_progenitor_cell_derived_from_H9	chr8	75324333	75324353	75324352	-	RAMPAGE_only	5	6	9	0.832699	2.500000	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223116	75278889	CASC9|NR_103849.2	-	75223116,75278712	75224358,75278889	0.777778
neural_progenitor_cell_derived_from_H9	chr12	123272331	123272335	123272334	-	High_confidence	8	12	20	1.850441	3.787144	chr12	123272292	123272359	DNA|hAT-Charlie|Charlie4z	-	chr12	123261275	123272334	CDK2AP1|ENST00000544658.5	-	123261275,123265195,123267184,123272156	123261803,123265322,123267282,123272334	0.550000
neural_progenitor_cell_derived_from_H9	chr1	28681084	28681085	28681084	+	RAMPAGE_only	9	9	9	0.832699	2.725481	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	1.000000
neural_progenitor_cell_derived_from_H9	chr15	51936194	51936208	51936195	-	High_confidence	28	35	90	8.326986	4.649000	chr15	51935784	51936413	LTR|ERVL|LTR50	-	chr15	51929336	51936179	MSTRG.17054.2	-	51929336,51930528,51936033	51929478,51930623,51936179	0.566667
neural_progenitor_cell_derived_from_H9	chr7	87040212	87040249	87040222	-	High_confidence	102	103	322	29.792107	7.283158	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86907696	87040286	MSTRG.47693.8	-	86907696,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040286	0.854037
neural_progenitor_cell_derived_from_H9	chr12	31117719	31117767	31117766	-	High_confidence	3	3	10	0.925221	2.921928	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.700000
neural_progenitor_cell_derived_from_H9	chr21	33945809	33945810	33945809	-	RAMPAGE_only	24	24	24	2.220530	3.538320	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
neural_progenitor_cell_derived_from_H9	chr19	12800915	12801038	12800944	-	High_confidence	13	13	75	6.939155	3.773182	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	1.000000
neural_progenitor_cell_derived_from_H9	chr20	8600634	8600739	8600660	+	High_confidence	42	42	231	21.372598	5.016993	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.835498
neural_progenitor_cell_derived_from_H9	chr17	60886978	60886979	60886978	+	High_confidence	7	7	7	0.647654	2.521641	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.571429
neural_progenitor_cell_derived_from_H9	chr1	155834588	155834640	155834639	-	RAMPAGE_only	25	25	89	8.234464	5.129121	chr1	155834525	155834826	LTR|ERV1|MER41B	+	chr1	155764426	155857204	GON4L|ENST00000361040.9	-	155764426,155767424,155771066,155773065,155775001,155776394,155777621,155783985,155785333,155795049,155804948,155813633,155814329,155815804,155816211,155820605,155821473,155822285,155826836,155853275,155857158	155766709,155767541,155771217,155773210,155775173,155776481,155777820,155784089,155785374,155795151,155805141,155813804,155814449,155815900,155816262,155820656,155821548,155822476,155827028,155853806,155857204	0.786517
neural_progenitor_cell_derived_from_H9	chr1	23404025	23404065	23404025	-	RAMPAGE_only	3	3	10	0.925221	2.947703	chr1	23403928	23404035	LINE|RTE-BovB|MamRTE1	+	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.700000
neural_progenitor_cell_derived_from_H9	chr5	102671340	102671369	102671368	-	High_confidence	2	2	6	0.555132	2.584963	chr5	102671229	102677260	LINE|L1|L1PA2	+	chr5	102609259	102671307	LINC00491|ENST00000505527.5	-	102609259,102611892,102617857,102671226	102609766,102611955,102617928,102671307	0.500000
neural_progenitor_cell_derived_from_H9	chr3	180680220	180680221	180680220	-	High_confidence	6	6	9	0.832699	2.500000	chr3	180680128	180680318	DNA|hAT-Charlie|MER102a	+	chr3	180614587	180679500	CCDC39|ENST00000442201.6	-	180614587,180616280,180616515,180616825,180619258,180619810,180631468,180641992,180644119,180647078,180648164,180651400,180652162,180654761,180659451,180659676,180660569,180661860,180663866,180679290	180615077,180616363,180616695,180616966,180619365,180619970,180631592,180642201,180644257,180647243,180648359,180651533,180652266,180654953,180659580,180659769,180660728,180662007,180663986,180679500	0.666667
neural_progenitor_cell_derived_from_H9	chr18	976418	976497	976418	+	High_confidence	27	32	221	20.447378	6.128464	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976588	1159391	AP005328.1|ENST00000577719.5	+	976588,1133842,1137813,1159178	976895,1133952,1137864,1159391	0.502262
neural_progenitor_cell_derived_from_H9	chr11	64226142	64226180	64226142	-	High_confidence	56	56	350	32.382725	6.492121	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223798	64226150	TRPT1|ENST00000394547.7	-	64223798,64224099,64224284,64224542,64224800,64225498,64226049	64223967,64224210,64224341,64224717,64224970,64225580,64226150	0.868571
neural_progenitor_cell_derived_from_H9	chr5	27472283	27472304	27472283	+	High_confidence	403	435	1207	111.674139	7.357473	chr5	27472073	27472487	LTR|ERV1|MER61C	+	chr5	27472291	27497500	MSTRG.40148.1	+	27472291,27475534	27472519,27497500	0.809445
neural_progenitor_cell_derived_from_H9	chr7	33527343	33527387	33527386	+	RAMPAGE_only	4	4	14	1.295309	3.521641	chr7	33521747	33527773	LINE|L1|L1PA2	-	chr7	33351926	33605626	MSTRG.46599.12	+	33351926,33357854,33367766,33383665,33387991,33505462,33533953,33604864,33605194	33352049,33357995,33367862,33383838,33388144,33505645,33534176,33604975,33605626	0.500000
neural_progenitor_cell_derived_from_H9	chr3	18516080	18516083	18516080	+	RAMPAGE_only	4	5	8	0.740177	2.807355	chr3	18516080	18520244	LINE|L1|L1HS	+	chr3	18527181	18530546	SATB1-AS1|ENST00000629177.2	+	18527181,18528075,18529980	18527326,18528139,18530546	0.625000
neural_progenitor_cell_derived_from_H9	chr4	112645764	112645785	112645784	+	RAMPAGE_only	5	5	10	0.925221	3.121928	chr4	112645504	112645815	SINE|Alu|AluJb	-	chr4	112646889	112647338	LARP7|ENST00000503316.1	+	112646889,112647052,112647201	112646955,112647127,112647338	0.800000
neural_progenitor_cell_derived_from_H9	chr2	11681430	11681437	11681436	+	High_confidence	12	12	19	1.757919	4.037401	chr2	11681255	11681626	LTR|ERVL-MaLR|MSTA	+	chr2	11681459	11683323	AC106875.1|ENST00000455754.1	+	11681459,11682297	11681492,11683323	0.947368
neural_progenitor_cell_derived_from_H9	chr17	50737332	50737360	50737359	+	RAMPAGE_only	4	4	13	1.202787	3.251629	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50744660	50750847	LUC7L3|ENST00000504065.5	+	50744660,50745719,50746541,50749218,50750500	50744813,50746003,50746702,50749344,50750847	0.769231
neural_progenitor_cell_derived_from_H9	chr3	9986881	9986905	9986898	+	High_confidence	33	41	131	12.120391	6.021824	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.648855
neural_progenitor_cell_derived_from_H9	chr19	571725	571755	571725	-	High_confidence	22	22	101	9.344729	5.708574	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567310	571734	AC009005.1|ENST00000590292.5	-	567310,571439,571696	567624,571596,571734	0.792079
neural_progenitor_cell_derived_from_H9	chr3	36925060	36925068	36925067	-	RAMPAGE_only	6	8	22	2.035486	3.820889	chr3	36923610	36925588	LTR|ERV1|MER83A-int	+	chr3	36826825	36944861	TRANK1|ENST00000646897.1	-	36826825,36829563,36830872,36834761,36838371,36838612,36842621,36846247,36847199,36850153,36851718,36852145,36855172,36858717,36860905,36864318,36874125,36889828,36892201,36892900,36895639,36899108,36903148,36908322,36929314,36944786	36828375,36829662,36833919,36834907,36838504,36838716,36842710,36846404,36847346,36851417,36851856,36852345,36858049,36858894,36861160,36864480,36874296,36889960,36892340,36892984,36895758,36899259,36903275,36908454,36929415,36944861	0.954545
neural_progenitor_cell_derived_from_H9	chr8	99893471	99893497	99893471	-	High_confidence	2	2	9	0.832699	2.500000	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.888889
neural_progenitor_cell_derived_from_H9	chr3	178860340	178860445	178860405	-	High_confidence	6	9	73	6.754111	5.061008	chr3	178859948	178865979	LINE|L1|L1PA2	+	chr3	178525466	178860405	KCNMB2-AS1|NR_126561.1	-	178525466,178748428,178749045,178801792,178859488,178860293	178526625,178748485,178749236,178801934,178859623,178860405	0.616438
neural_progenitor_cell_derived_from_H9	chr3	57197096	57197113	57197109	+	RAMPAGE_only	11	16	43	3.978449	4.900116	chr3	57196989	57197284	SINE|Alu|AluYc	-	chr3	57227725	57278105	APPL1|ENST00000650354.1	+	57227725,57235565,57237491,57238044,57240464,57242100,57242855,57246075,57247394,57248192,57249359,57252268,57253681,57256956,57257245,57259027,57259844,57260116,57260627,57267741,57268397,57269540,57276303,57277792	57227937,57235664,57237551,57238116,57240552,57242142,57242914,57246222,57247477,57248351,57249548,57252311,57253738,57257051,57257428,57259080,57260019,57260153,57260774,57267792,57268487,57269751,57276459,57278105	0.720930
neural_progenitor_cell_derived_from_H9	chr16	11587435	11587475	11587465	-	High_confidence	3	3	13	1.202787	3.084963	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.923077
neural_progenitor_cell_derived_from_H9	chr11	86669525	86669526	86669525	-	RAMPAGE_only	10	10	14	1.295309	3.546594	chr11	86669355	86669722	LTR|ERVL-MaLR|THE1D	-	chr11	86446892	86671965	ME3|ENST00000530520.5	-	86446892,86448149,86449888,86450300,86465090,86487336,86497962,86508791,86556552,86559689,86671761	86447207,86448255,86450002,86450398,86465200,86487440,86498124,86508867,86556702,86559823,86671965	0.571429
neural_progenitor_cell_derived_from_H9	chr12	121582253	121582279	121582278	-	RAMPAGE_only	5	5	12	1.110265	3.084963	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121429095	121581015	KDM2B|NM_032590.4	-	121429095,121439856,121440815,121441069,121442156,121442991,121443679,121444011,121444449,121445274,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549459,121574546,121575780,121578801,121580785	121430469,121440075,121440977,121441233,121442836,121443030,121443793,121444272,121444536,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548983,121549638,121574593,121575859,121578946,121581015	1.000000
neural_progenitor_cell_derived_from_H9	chr1	185257385	185257420	185257419	+	RAMPAGE_only	15	15	25	2.313052	4.022055	chr1	185251798	185257805	LINE|L1|L1PA2	-	chr1	185157240	185291735	MSTRG.3809.3	+	185157240,185160832,185166571,185168339,185174371,185180390,185181945,185184242,185184742,185190548,185202653,185204699,185206624,185214506,185221848,185231576,185271322,185276603,185290673	185157309,185160925,185166652,185168398,185175113,185180450,185182057,185184344,185184931,185190642,185202799,185204863,185206763,185214655,185222036,185231708,185271389,185276668,185291735	0.920000
neural_progenitor_cell_derived_from_H9	chr15	80059908	80059933	80059918	+	High_confidence	36	45	161	14.896053	4.846863	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.962733
neural_progenitor_cell_derived_from_H9	chr1	45522798	45522818	45522798	-	High_confidence	3	3	11	1.017743	2.913977	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	1.000000
neural_progenitor_cell_derived_from_H9	chr15	53541094	53541120	53541094	-	High_confidence	13	14	26	2.405574	4.023465	chr15	53540633	53546677	LINE|L1|L1PA2	+	chr15	53513740	53541103	WDR72|ENST00000567224.1	-	53513740,53523217,53540889	53517754,53523322,53541103	0.923077
neural_progenitor_cell_derived_from_H9	chr1	46393788	46393789	46393788	+	High_confidence	16	16	20	1.850441	3.576618	chr1	46393503	46393974	LTR|ERV1|LTR10F	-	chr1	46393771	46413845	MSTRG.1407.1	+	46393771,46402090,46405013,46405371,46405587,46406037,46406243,46408458,46409100,46410397,46410813,46411611,46412142,46413074,46413446	46393861,46402204,46405148,46405505,46405794,46406078,46406368,46408584,46409198,46410497,46410854,46411651,46412251,46413220,46413845	0.700000
neural_progenitor_cell_derived_from_H9	chr9	114327236	114327279	114327236	+	RAMPAGE_only	4	5	27	2.498096	3.825252	chr9	114327052	114327433	LTR|ERVL-MaLR|MSTA	+	chr9	114329788	114333256	ORM2|NM_000608.2	+	114329788,114330433,114330791,114331566,114331825,114333068	114330018,114330576,114330862,114331674,114331929,114333256	0.851852
neural_progenitor_cell_derived_from_H9	chr7	128709053	128709090	128709089	+	High_confidence	18	22	34	3.145750	4.536670	chr7	128708844	128709287	LTR|ERVL-MaLR|MLT1J	+	chr7	128709089	128723426	FAM71F1|ENST00000493738.5	+	128709089,128713922,128716812,128718830,128723196	128709207,128714009,128716997,128719083,128723426	0.500000
neural_progenitor_cell_derived_from_H9	chr4	24325669	24325707	24325686	-	RAMPAGE_only	7	7	20	1.850441	3.366091	chr4	24323717	24326612	LTR|ERV1|HERVH-int	+	chr4	23792020	23890077	PPARGC1A|ENST00000264867.6	-	23792020,23801729,23802223,23812746,23813020,23813689,23824279,23824462,23828399,23829462,23831556,23884751,23889903	23795925,23801881,23802345,23812867,23813125,23814605,23824353,23824508,23828604,23829585,23831751,23884931,23890077	0.500000
neural_progenitor_cell_derived_from_H9	chr16	72627719	72627766	72627739	-	High_confidence	28	29	133	12.305435	6.061076	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72427245	72627713	MSTRG.20038.5	-	72427245,72522552,72523331,72540577,72555264,72570450,72627534	72427457,72522623,72523415,72540611,72555326,72570515,72627713	0.646617
neural_progenitor_cell_derived_from_H9	chr5	102671408	102671464	102671421	-	High_confidence	5	5	27	2.498096	4.238901	chr5	102671229	102677260	LINE|L1|L1PA2	+	chr5	102608491	102671464	LINC00491|NR_103753.1	-	102608491,102636142,102671226	102609766,102636291,102671464	0.629630
neural_progenitor_cell_derived_from_H9	chr12	9567416	9567445	9567425	+	RAMPAGE_only	7	7	33	3.053228	3.498347	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9564388	9576257	MSTRG.10054.8	+	9564388,9567489,9569057,9570765,9571460,9573002,9573465,9574846,9575642,9576117	9565303,9567567,9569202,9570892,9571573,9573093,9573534,9574949,9575717,9576257	1.000000
neural_progenitor_cell_derived_from_H9	chr1	113759884	113759897	113759894	-	High_confidence	6	6	13	1.202787	3.251629	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.615385
neural_progenitor_cell_derived_from_H9	chr1	42959478	42959491	42959490	+	High_confidence	4	4	9	0.832699	2.750000	chr1	42959490	42959595	LINE|L2|L2c	+	chr1	42959048	42983358	SLC2A1-AS1|NR_033967.1	+	42959048,42970248,42973973,42983124	42959577,42970394,42974188,42983358	0.888889
neural_progenitor_cell_derived_from_H9	chr9	87042072	87042126	87042072	-	High_confidence	6	6	29	2.683140	4.384517	chr9	87041882	87047900	LINE|L1|L1PA3	+	chr9	87008450	87042126	LOC440173|NR_027471.1	-	87008450,87041870	87010210,87042126	0.689655
neural_progenitor_cell_derived_from_H9	chr2	117804234	117804272	117804234	-	High_confidence	3	3	15	1.387831	2.872906	chr2	117803780	117809809	LINE|L1|L1PA3	+	chr2	117757562	117804174	AC009312.1|ENST00000457110.1	-	117757562,117760372,117785529,117804131	117757774,117760591,117785647,117804174	1.000000
neural_progenitor_cell_derived_from_H9	chr12	6582139	6582169	6582139	-	High_confidence	3	3	13	1.202787	2.815072	chr12	6581880	6582102	SINE|Alu|AluSx1	-	chr12	6570190	6581343	CHD4|ENST00000644652.1	-	6570190,6570868,6573073,6577784,6578028,6578408,6578845,6580581,6581043,6581290	6570693,6571032,6573269,6577917,6578137,6578546,6578917,6580699,6581173,6581343	0.846154
neural_progenitor_cell_derived_from_H9	chr11	67620350	67620363	67620350	+	High_confidence	2	2	6	0.555132	2.584963	chr11	67618852	67620425	LTR|ERV1|LTR12C	+	chr11	67619975	67630254	MSTRG.8448.1	+	67619975,67626053	67620536,67630254	0.666667
neural_progenitor_cell_derived_from_H9	chr13	51170370	51170397	51170370	+	RAMPAGE_only	2	2	11	1.017743	2.663533	chr13	51170316	51173284	LTR|ERV1|HERVH-int	+	chr13	51187389	51187874	MSTRG.13193.1	+	51187389	51187874	0.909091
neural_progenitor_cell_derived_from_H9	chr3	16697518	16697519	16697518	-	RAMPAGE_only	14	14	19	1.757919	3.836592	chr3	16697224	16697676	LTR|ERV1|LTR49-int	-	chr3	16587524	16648614	MSTRG.34037.3	-	16587524,16592049,16593654,16594532,16595313,16596749,16596987,16597489,16598086,16598451,16637884,16647808	16588713,16592148,16593768,16594583,16595385,16596889,16597051,16597541,16598178,16598598,16637928,16648614	0.947368
neural_progenitor_cell_derived_from_H9	chr4	187995728	187995788	187995787	+	High_confidence	57	58	322	29.792107	4.453895	chr4	187995806	187995869	DNA|hAT-Charlie|MER112	+	chr4	187995770	188005050	ZFP42|NM_174900.4	+	187995770,187999107,187999608,188002712	187995840,187999273,187999685,188005050	0.953416
neural_progenitor_cell_derived_from_H9	chr7	137181986	137181997	137181996	-	High_confidence	9	9	19	1.757919	3.308271	chr7	137181608	137187601	LINE|L1|L1PA3	+	chr7	136784074	137181771	AC009264.1|ENST00000439694.5	-	136784074,137031904,137032793,137181607	136785891,137031963,137032913,137181771	0.526316
neural_progenitor_cell_derived_from_H9	chr11	10044560	10044635	10044560	-	High_confidence	10	11	98	9.067163	5.399251	chr11	10044309	10044581	LTR|ERVL|LTR66	-	chr11	9993011	10044606	SBF2|ENST00000527019.5	-	9993011,9993920,10000913,10002556,10028451,10029764,10031047,10042843,10044518	9993103,9993998,10001022,10002689,10028557,10029875,10031170,10042981,10044606	0.836735
neural_progenitor_cell_derived_from_H9	chr2	77593001	77593028	77593001	-	High_confidence	4	4	27	2.498096	3.893661	chr2	77592831	77598845	LINE|L1|L1PA3	+	chr2	77591740	77593278	MSTRG.28136.9	-	77591740,77593163	77592935,77593278	0.740741
neural_progenitor_cell_derived_from_H9	chr2	180056778	180056779	180056778	+	High_confidence	86	87	88	8.141942	5.230035	chr2	180056547	180056938	LTR|ERVK|LTR14B	+	chr2	180056957	180057850	MSTRG.29806.1	+	180056957	180057850	0.977273
neural_progenitor_cell_derived_from_H9	chr1	235670239	235670366	235670338	+	High_confidence	14	15	88	8.141942	5.813577	chr1	235670103	235670445	LTR|ERV1|LTR10B2	+	chr1	235670286	235711139	MSTRG.4596.1	+	235670286,235710642	235670650,235711139	0.522727
neural_progenitor_cell_derived_from_H9	chr12	104030726	104030747	104030726	+	High_confidence	50	52	87	8.049420	5.521806	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.919540
neural_progenitor_cell_derived_from_H9	chr14	39017579	39017624	39017579	-	High_confidence	13	14	45	4.163493	4.419103	chr14	39017171	39023327	LINE|L1|L1PA4	+	chr14	39016566	39017062	MSTRG.14522.1	-	39016566	39017062	0.822222
neural_progenitor_cell_derived_from_H9	chr12	64293377	64293380	64293377	-	High_confidence	13	13	31	2.868184	3.989898	chr12	64287349	64293377	LINE|L1|L1PA2	-	chr12	64266982	64293383	C12orf56|ENST00000536975.5	-	64266982,64270535,64274900,64275297,64277679,64284663,64285953,64293280	64267288,64270714,64274975,64275372,64277803,64284753,64286060,64293383	0.741935
neural_progenitor_cell_derived_from_H9	chr7	30642336	30642446	30642387	+	High_confidence	7	9	47	4.348537	4.778678	chr7	30636808	30642830	LINE|L1|L1PA2	-	chr7	30642388	30755851	MSTRG.46563.1	+	30642388,30654317,30745282,30753730,30755421	30642836,30654514,30745336,30753938,30755851	0.574468
neural_progenitor_cell_derived_from_H9	chr11	123060156	123060256	123060255	-	High_confidence	8	9	89	8.234464	4.726255	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.674157
neural_progenitor_cell_derived_from_H9	chr18	976677	976687	976677	+	High_confidence	4	4	13	1.202787	2.815072	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976696	1159311	AP005328.1|ENST00000579835.5	+	976696,1061462,1133842,1137813,1159178	976895,1061535,1133894,1137864,1159311	0.538462
neural_progenitor_cell_derived_from_H9	chr4	61646819	61646916	61646915	+	RAMPAGE_only	8	8	25	2.313052	3.539471	chr4	61641294	61647303	LINE|L1|L1PA3	-	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.920000
neural_progenitor_cell_derived_from_H9	chr1	196786463	196786537	196786536	+	High_confidence	10	10	46	4.256015	4.819305	chr1	196780803	196786955	LINE|L1|L1PA3	-	chr1	196786485	196793633	MSTRG.3892.6	+	196786485,196788215,196793316	196786610,196790227,196793633	0.847826
neural_progenitor_cell_derived_from_H9	chr1	65564121	65564179	65564178	+	High_confidence	4	4	20	1.850441	3.536887	chr1	65558564	65564576	LINE|L1|L1PA2	-	chr1	65564660	65635428	MSTRG.1710.13	+	65564660,65565545,65570472,65572325,65592656,65596447,65598659,65601391,65601842,65605037,65608752,65609946,65610213,65616007,65617963,65619927,65621352,65622905,65633151	65564806,65565605,65570802,65572449,65592865,65596593,65598804,65601682,65601960,65605237,65608901,65610106,65610296,65616224,65618146,65620023,65621458,65622981,65635428	0.650000
neural_progenitor_cell_derived_from_H9	chr1	180872351	180872378	180872351	+	RAMPAGE_only	2	2	9	0.832699	3.000000	chr1	180866811	180872843	LINE|L1|L1HS	-	chr1	180632031	180886126	XPR1|ENST00000367589.3	+	180632031,180682359,180787752,180803387,180806061,180806473,180811406,180824752,180825164,180834873,180863707,180873802,180880075,180884005	180632270,180682411,180787854,180803611,180806211,180806557,180811488,180824943,180825344,180835045,180863874,180873942,180880297,180886126	0.666667
neural_progenitor_cell_derived_from_H9	chr5	147946645	147946677	147946645	+	High_confidence	22	22	60	5.551324	5.327475	chr5	147941118	147947133	LINE|L1|L1PA3	-	chr5	147946632	148137283	MSTRG.42170.3	+	147946632,147948791,147963709,148011606,148020749,148065346,148070322,148072147,148086404,148088541,148089493,148091164,148094353,148095817,148097866,148099233,148100453,148101354,148101780,148104951,148107036,148108752,148111767,148112867,148114361,148116369,148118436,148118985,148120008,148120294,148123832,148124764,148125523,148125722,148126982,148131258,148133796,148136982	147947171,147948905,147963822,148011724,148020849,148065372,148070450,148072220,148086532,148088605,148089621,148091228,148094481,148095905,148097994,148099315,148100581,148101436,148101908,148105000,148107164,148108837,148111895,148112934,148114489,148116466,148118564,148119058,148120136,148120391,148123960,148124837,148125613,148125850,148127079,148131389,148133887,148137283	0.650000
neural_progenitor_cell_derived_from_H9	chr11	3380960	3380961	3380960	+	High_confidence	232	238	240	22.205297	6.441979	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.504167
neural_progenitor_cell_derived_from_H9	chr12	9911025	9911029	9911025	-	High_confidence	348	376	692	64.025273	7.157715	chr12	9910912	9911410	LTR|ERV1|LTR10B2	-	chr12	9882647	9911022	MSTRG.10036.2	-	9882647,9902512	9902468,9911022	0.953757
neural_progenitor_cell_derived_from_H9	chr13	45379794	45379802	45379801	+	RAMPAGE_only	6	7	13	1.202787	3.084963	chr13	45379416	45380004	LTR|ERV1|HERVE-int	-	chr13	45378559	45391722	TPT1-AS1|ENST00000522673.5	+	45378559,45379194,45379925,45383090,45383759,45389734,45390713,45391031	45378671,45379335,45380001,45383235,45383838,45389820,45390902,45391722	0.538462
neural_progenitor_cell_derived_from_H9	chrX	131579064	131579170	131579064	-	High_confidence	26	27	94	8.697075	5.630747	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131361057	131579111	MSTRG.55935.12	-	131361057,131368367,131368951,131389016,131578937	131364926,131368449,131369052,131389148,131579111	0.542553
neural_progenitor_cell_derived_from_H9	chr1	173637780	173637786	173637780	+	High_confidence	6	6	13	1.202787	2.777363	chr1	173637824	173638104	LTR|ERV1|HERVIP10B3-int	+	chr1	173637715	173734217	MSTRG.3620.3	+	173637715,173660102,173716002,173733712	173640866,173671334,173716066,173734217	0.846154
neural_progenitor_cell_derived_from_H9	chr20	53504313	53504336	53504313	-	High_confidence	6	7	13	1.202787	3.392747	chr20	53503851	53509874	LINE|L1|L1PA2	+	chr20	53453057	53504314	AL354993.2|ENST00000558738.1	-	53453057,53455255,53461468,53504108	53453108,53455440,53461568,53504314	0.615385
neural_progenitor_cell_derived_from_H9	chr6	76877074	76877077	76877074	-	High_confidence	9	10	17	1.572875	3.969816	chr6	76875759	76877075	LINE|L1|L1HS	-	chr6	76870820	76877070	MSTRG.44322.1	-	76870820	76877070	1.000000
neural_progenitor_cell_derived_from_H9	chr11	67619986	67619987	67619986	+	High_confidence	5050	5070	5196	480.744677	5.741746	chr11	67618852	67620425	LTR|ERV1|LTR12C	+	chr11	67619975	67630254	MSTRG.8448.1	+	67619975,67626053	67620536,67630254	0.959584
neural_progenitor_cell_derived_from_H9	chr3	16697555	16697604	16697575	-	RAMPAGE_only	10	10	58	5.366280	5.129280	chr3	16697224	16697676	LTR|ERV1|LTR49-int	-	chr3	16587524	16648614	MSTRG.34037.3	-	16587524,16592049,16593654,16594532,16595313,16596749,16596987,16597489,16598086,16598451,16637884,16647808	16588713,16592148,16593768,16594583,16595385,16596889,16597051,16597541,16598178,16598598,16637928,16648614	0.879310
neural_progenitor_cell_derived_from_H9	chr18	41632127	41632206	41632205	-	High_confidence	49	51	265	24.518349	6.933911	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41473591	41632075	MSTRG.23639.2	-	41473591,41480755,41481881,41482444,41501119,41516419,41520383,41525354,41631999	41477777,41481267,41481957,41482577,41501276,41516555,41521496,41525526,41632075	0.566038
neural_progenitor_cell_derived_from_H9	chr12	21214623	21214644	21214623	+	High_confidence	4	5	12	1.110265	2.688722	chr12	21209060	21215087	LINE|L1|L1PA2	-	chr12	21214667	21269755	MSTRG.10329.18	+	21214667,21222299,21224721,21267650,21269646	21214744,21222364,21224839,21267771,21269755	0.833333
neural_progenitor_cell_derived_from_H9	chr2	143534205	143534222	143534217	+	High_confidence	15	15	41	3.793405	3.332737	chr2	143534025	143534399	LTR|ERVL-MaLR|THE1D	+	chr2	143534169	143769118	MSTRG.29135.12	+	143534169,143556407,143624132,143703418,143767988	143534317,143556485,143624267,143703524,143769118	0.975610
neural_progenitor_cell_derived_from_H9	chr7	121511303	121511340	121511303	-	High_confidence	20	21	48	4.441059	4.969274	chr7	121510991	121511453	LTR|ERV1|LTR10B2	-	chr7	121479499	121511254	MSTRG.48408.8	-	121479499,121499866	121486499,121511254	0.687500
neural_progenitor_cell_derived_from_H9	chr7	158863386	158863409	158863400	+	RAMPAGE_only	4	7	19	1.757919	3.681881	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.789474
neural_progenitor_cell_derived_from_H9	chr17	69004719	69004738	69004719	+	RAMPAGE_only	4	4	20	1.850441	3.584184	chr17	69000000	69005148	LINE|L1|L1HS	-	chr17	69012345	69020806	ABCA9-AS1|ENST00000630575.2	+	69012345,69018103,69019881,69020425	69012353,69018151,69019994,69020806	0.800000
neural_progenitor_cell_derived_from_H9	chr14	30690418	30690460	30690449	+	RAMPAGE_only	4	5	18	1.665397	3.947703	chr14	30684809	30690837	LINE|L1|L1HS	-	chr14	30705823	30735799	SCFD1|ENST00000554437.5	+	30705823,30707816,30707989,30715923,30719324,30721883,30722493,30734789,30735585	30705885,30707876,30708065,30715977,30719377,30721917,30722559,30734858,30735799	0.555556
neural_progenitor_cell_derived_from_H9	chr11	67620111	67620125	67620124	+	High_confidence	4	4	14	1.295309	3.238901	chr11	67618852	67620425	LTR|ERV1|LTR12C	+	chr11	67619975	67630254	MSTRG.8448.1	+	67619975,67626053	67620536,67630254	0.928571
neural_progenitor_cell_derived_from_H9	chrX	131785224	131785245	131785243	-	High_confidence	2	4	9	0.832699	2.750000	chrX	131784983	131785287	SINE|Alu|AluSz	+	chrX	131691995	131785262	FIRRE|ENST00000649391.1	-	131691995,131695466,131695843,131703416,131709497,131711650,131749305,131755597,131756610,131768548,131777622,131783886,131785156	131692636,131695620,131695913,131703518,131709556,131711744,131749458,131755746,131756709,131768696,131777744,131784039,131785262	0.888889
neural_progenitor_cell_derived_from_H9	chrX	16712889	16712959	16712889	-	High_confidence	60	64	247	22.852951	6.019666	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.967611
neural_progenitor_cell_derived_from_H9	chr14	28318036	28318065	28318036	+	High_confidence	5	5	14	1.295309	3.039149	chr14	28312502	28318523	LINE|L1|L1PA2	-	chr14	28318140	28418612	AL139023.1|ENST00000548280.1	+	28318140,28405425,28418543	28318532,28405472,28418612	0.642857
neural_progenitor_cell_derived_from_H9	chr10	119038237	119038278	119038237	-	RAMPAGE_only	2	2	9	0.832699	3.000000	chr10	119037907	119038207	SINE|Alu|AluSq2	-	chr10	119033669	119080804	EIF3A|ENST00000369144.7	-	119033669,119037118,119038237,119041993,119044053,119049800,119050520,119051198,119056739,119056935,119057955,119059211,119059601,119060745,119061223,119065398,119069445,119070885,119072889,119073440,119073746,119080627	119036268,119037309,119038439,119042772,119044142,119049985,119050674,119051321,119056853,119057040,119058303,119059397,119059718,119060844,119061328,119065570,119069654,119071085,119073053,119073577,119073937,119080804	0.888889
neural_progenitor_cell_derived_from_H9	chr22	50756861	50756950	50756861	+	High_confidence	9	11	37	3.423317	4.815623	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.621622
neural_progenitor_cell_derived_from_H9	chr6	87329277	87329278	87329277	-	High_confidence	9	9	12	1.110265	3.418296	chr6	87323278	87329278	LINE|L1|L1PA3	-	chr6	87282977	87329278	GJB7|ENST00000525899.5	-	87282977,87322865,87329137	87284939,87323043,87329278	0.833333
neural_progenitor_cell_derived_from_H9	chr4	119279739	119279743	119279739	+	RAMPAGE_only	7	9	19	1.757919	2.925853	chr4	119274113	119280127	LINE|L1|L1PA2	-	chr4	119239639	119294638	USP53|ENST00000509769.5	+	119239639,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119266299,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119266333,119267482,119268420,119269837,119272034,119273708,119291261,119294638	1.000000
neural_progenitor_cell_derived_from_H9	chr11	27219813	27219838	27219837	-	High_confidence	2	2	7	0.647654	2.584963	chr11	27219703	27225730	LINE|L1|L1PA2	+	chr11	27062982	27220113	BBOX1-AS1|NR_125767.1	-	27062982,27066491,27151049,27217316,27220046	27063060,27066662,27151152,27217480,27220113	0.571429
neural_progenitor_cell_derived_from_H9	chr3	139344537	139344548	139344547	+	High_confidence	130	130	281	25.998702	5.682484	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.957295
neural_progenitor_cell_derived_from_H9	chr18	12419888	12419942	12419888	+	High_confidence	10	10	33	3.053228	4.413910	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12419932	12432238	PRELID3A|ENST00000592149.5	+	12419932,12421539,12427040,12427220,12429349,12431149	12420493,12421629,12427111,12427323,12429436,12432238	0.939394
neural_progenitor_cell_derived_from_H9	chr12	110936584	110936585	110936584	+	High_confidence	4	5	7	0.647654	2.521641	chr12	110936431	110936780	LTR|ERVL-MaLR|THE1D	+	chr12	110936601	110937451	LINC01405|ENST00000331096.2	+	110936601,110937184	110936698,110937451	0.857143
neural_progenitor_cell_derived_from_H9	chr7	20835354	20835397	20835375	+	RAMPAGE_only	11	16	68	6.291501	5.332964	chr7	20835099	20835446	LTR|ERV1|MER61A	-	chr7	20960765	21075654	MSTRG.46367.2	+	20960765,21020867,21021858,21023131,21033421,21048307,21048950,21069753,21074524,21075255	20960851,21021003,21021907,21023309,21033558,21048481,21049013,21069871,21074622,21075654	0.500000
neural_progenitor_cell_derived_from_H9	chr1	238486008	238486037	238486008	-	High_confidence	10	10	32	2.960706	4.518397	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480383	238486017	LINC01139|NR_015407.1	-	238480383,238485784	238481681,238486017	0.718750
neural_progenitor_cell_derived_from_H9	chr1	187641233	187641287	187641286	+	High_confidence	42	59	235	21.742687	5.686283	chr1	187641123	187641443	LTR|ERV1|MER61A	+	chr1	187641284	187686622	ERVMER61-1|ENST00000643044.1	+	187641284,187641617,187685703	187641481,187641814,187686622	0.731915
neural_progenitor_cell_derived_from_H9	chr13	112905211	112905212	112905211	-	High_confidence	45	45	46	4.256015	4.986189	chr13	112905088	112905575	LTR|ERV1|LTR10B1	-	chr13	112904348	112905204	MSTRG.13931.1	-	112904348	112905204	0.673913
neural_progenitor_cell_derived_from_H9	chr17	4143196	4143215	4143199	+	High_confidence	70	70	159	14.711009	5.117577	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.981132
neural_progenitor_cell_derived_from_H9	chr3	98733171	98733187	98733179	+	High_confidence	3	3	13	1.202787	3.418296	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.692308
neural_progenitor_cell_derived_from_H9	chr16	4355592	4355593	4355592	-	High_confidence	132	133	133	12.305435	4.501970	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.947368
neural_progenitor_cell_derived_from_H9	chr9	39809803	39809859	39809852	-	High_confidence	8	8	46	4.256015	3.236414	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.826087
neural_progenitor_cell_derived_from_H9	chr15	85433962	85433963	85433962	+	High_confidence	9	9	9	0.832699	2.725481	chr15	85433963	85439965	LINE|L1|L1PA2	+	chr15	85433833	85669828	MSTRG.18022.9	+	85433833,85485709,85521427,85533583,85543771,85575130,85578929,85585701,85639373,85645817,85655416,85658536,85664562,85669721	85434059,85485753,85521575,85533880,85543955,85575329,85582107,85585823,85639449,85645954,85655787,85658590,85664755,85669828	0.555556
neural_progenitor_cell_derived_from_H9	chr1	200411799	200411826	200411799	+	High_confidence	15	16	38	3.515839	3.728139	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411799	200475513	AC104461.1|ENST00000634596.1	+	200411799,200473908	200411962,200475513	0.973684
neural_progenitor_cell_derived_from_H9	chr11	27220088	27220147	27220088	-	High_confidence	15	18	51	4.718626	4.762496	chr11	27219703	27225730	LINE|L1|L1PA2	+	chr11	27217151	27220102	BBOX1-AS1|ENST00000531363.1	-	27217151,27219686	27217480,27220102	0.509804
neural_progenitor_cell_derived_from_H9	chr5	140700445	140700452	140700445	+	High_confidence	746	1034	1887	174.589146	4.565430	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.982512
neural_progenitor_cell_derived_from_H9	chr17	59619894	59619923	59619894	+	High_confidence	158	193	716	66.245802	6.119465	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.868715
neural_progenitor_cell_derived_from_H9	chr16	58755976	58755977	58755976	-	RAMPAGE_only	12	12	12	1.110265	3.188722	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
neural_progenitor_cell_derived_from_H9	chr17	59620005	59620010	59620009	+	High_confidence	3	3	8	0.740177	2.521641	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.625000
neural_progenitor_cell_derived_from_H9	chr7	2242922	2242923	2242922	+	High_confidence	32	32	32	2.960706	4.687500	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
neural_progenitor_cell_derived_from_H9	chr14	59952081	59952082	59952081	+	RAMPAGE_only	4	4	6	0.555132	2.584963	chr14	59946504	59952523	LINE|L1|L1PA2	-	chr14	59919712	60063559	LRRC9|NR_075071.1	+	59919712,59927910,59928267,59930917,59931618,59931968,59938389,59944588,59959817,59960913,59966588,59967095,59974575,59977224,59978016,59981847,59985104,59997655,59999100,60001965,60003620,60006396,60008091,60016659,60018345,60019120,60022733,60027883,60031994,60053064,60057877,60062010,60063322	59919883,59927991,59928486,59931058,59931682,59932039,59938572,59944744,59960014,59961045,59966765,59967213,59974708,59977347,59978132,59982060,59985224,59997847,59999226,60002100,60003798,60006617,60008214,60016790,60018479,60019260,60022870,60028101,60032067,60053205,60058022,60062179,60063559	0.833333
neural_progenitor_cell_derived_from_H9	chr18	8063038	8063039	8063038	+	RAMPAGE_only	4	5	7	0.647654	2.521641	chr18	8057452	8063463	LINE|L1|L1PA2	-	chr18	8017822	8113632	PTPRM|ENST00000578571.5	+	8017822,8069685,8076454,8085670,8088748,8113485	8018057,8069994,8076564,8085872,8088851,8113632	0.571429
neural_progenitor_cell_derived_from_H9	chr4	112645636	112645680	112645648	+	RAMPAGE_only	26	32	138	12.768046	5.791810	chr4	112645504	112645815	SINE|Alu|AluJb	-	chr4	112646889	112647338	LARP7|ENST00000503316.1	+	112646889,112647052,112647201	112646955,112647127,112647338	0.739130
neural_progenitor_cell_derived_from_H9	chr7	15547679	15547709	15547689	-	RAMPAGE_only	7	7	23	2.128008	3.368042	chr7	15547309	15553333	LINE|L1|L1PA2	+	chr7	15200317	15562015	AGMO|NM_001004320.1	-	15200317,15365513,15366139,15385445,15387405,15390670,15390839,15394112,15418557,15431004,15544771,15560140,15561719	15201359,15365619,15366222,15385562,15387540,15390750,15390905,15394179,15418653,15431108,15544923,15560271,15562015	0.608696
neural_progenitor_cell_derived_from_H9	chr1	174874418	174874439	174874418	+	High_confidence	10	12	30	2.775662	4.364735	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.533333
neural_progenitor_cell_derived_from_H9	chr1	24151492	24151524	24151515	+	High_confidence	5	5	31	2.868184	3.948859	chr1	24151159	24151642	LTR|ERV1|LTR10D	-	chr1	24151470	24160976	MSTRG.721.1	+	24151470,24155011,24157254	24151739,24155192,24160976	0.870968
neural_progenitor_cell_derived_from_H9	chr11	125537072	125537081	125537072	-	RAMPAGE_only	2	2	6	0.555132	2.584963	chr11	125536609	125542640	LINE|L1|L1HS	+	chr11	125455449	125496317	FEZ1|ENST00000392709.8	-	125455449,125460497,125481533,125489466,125496120	125456106,125460666,125481633,125489822,125496317	0.500000
neural_progenitor_cell_derived_from_H9	chr4	102431241	102431260	102431244	-	High_confidence	7	7	36	3.330795	4.395999	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.888889
neural_progenitor_cell_derived_from_H9	chr6	35566952	35566954	35566953	-	High_confidence	746	988	1122	103.809763	6.636454	chr6	35566829	35567331	LTR|ERV1|LTR10B	-	chr6	35558292	35566965	MSTRG.43658.2	-	35558292,35566613	35563514,35566965	0.907308
neural_progenitor_cell_derived_from_H9	chr22	39320300	39320335	39320334	-	High_confidence	2	2	8	0.740177	2.807355	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.750000
neural_progenitor_cell_derived_from_H9	chrX	107156153	107156167	107156153	-	RAMPAGE_only	5	5	13	1.202787	3.022055	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.692308
neural_progenitor_cell_derived_from_H9	chr2	174410074	174410108	174410097	+	High_confidence	5	5	17	1.572875	3.499228	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410081	174427895	SCRN3|ENST00000549848.5	+	174410081,174422884,174424474,174427712	174410503,174423047,174424649,174427895	1.000000
neural_progenitor_cell_derived_from_H9	chr7	133894976	133895039	133895033	+	RAMPAGE_only	4	4	19	1.757919	3.787144	chr7	133889425	133895455	LINE|L1|L1PA2	-	chr7	133930440	133997634	EXOC4|ENST00000478265.1	+	133930440,133937890,133997491	133930713,133938069,133997634	0.842105
neural_progenitor_cell_derived_from_H9	chr2	71417037	71417116	71417041	+	RAMPAGE_only	9	10	61	5.643846	5.415061	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.868852
neural_progenitor_cell_derived_from_H9	chr8	75324377	75324405	75324394	-	High_confidence	2	2	8	0.740177	2.521641	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.500000
neural_progenitor_cell_derived_from_H9	chr5	81616465	81616476	81616475	-	High_confidence	6	7	24	2.220530	4.220176	chr5	81616090	81622140	LINE|L1|L1HS	+	chr5	81442650	81616473	SSBP2|ENST00000509743.6	-	81442650,81446867,81448789,81461054,81466973,81473699,81474495,81489249,81513627,81615472,81616348	81442723,81446922,81448825,81461103,81467041,81473770,81474562,81489309,81513717,81615557,81616473	0.500000
neural_progenitor_cell_derived_from_H9	chr1	68881341	68881430	68881419	+	High_confidence	9	10	32	2.960706	4.040224	chr1	68875777	68881805	LINE|L1|L1PA2	-	chr1	68881576	68943452	AL033530.1|ENST00000646995.1	+	68881576,68942580	68882003,68943452	0.750000
neural_progenitor_cell_derived_from_H9	chr16	8836267	8836292	8836291	+	RAMPAGE_only	3	3	11	1.017743	2.646439	chr16	8835358	8837970	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.909091
neural_progenitor_cell_derived_from_H9	chr9	26976288	26976301	26976288	-	High_confidence	5	5	10	0.925221	2.721928	chr9	26972598	26976270	LTR|ERV1|HERVIP10F-int	-	chr9	26975408	26976390	MSTRG.51868.1	-	26975408	26976390	0.900000
neural_progenitor_cell_derived_from_H9	chr2	197640268	197640304	197640295	+	High_confidence	4	4	16	1.480353	3.240224	chr2	197634735	197640761	LINE|L1|L1PA2	-	chr2	197640782	197643686	MSTRG.30288.1	+	197640782	197643686	0.625000
neural_progenitor_cell_derived_from_H9	chr19	51354782	51354789	51354788	-	High_confidence	4	4	8	0.740177	3.000000	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
neural_progenitor_cell_derived_from_H9	chr8	71675282	71675283	71675282	+	High_confidence	7	7	7	0.647654	2.807355	chr8	71674936	71675387	LTR|ERV1|LTR7	+	chr8	71675299	71702786	AC009446.1|ENST00000519840.1	+	71675299,71702214	71675535,71702786	1.000000
neural_progenitor_cell_derived_from_H9	chr8	75324454	75324463	75324461	-	High_confidence	5	9	16	1.480353	3.240224	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.500000
neural_progenitor_cell_derived_from_H9	chr1	173637897	173637977	173637976	+	High_confidence	12	12	87	8.049420	5.515690	chr1	173637824	173638104	LTR|ERV1|HERVIP10B3-int	+	chr1	173637715	173734217	MSTRG.3620.3	+	173637715,173660102,173716002,173733712	173640866,173671334,173716066,173734217	0.931034
neural_progenitor_cell_derived_from_H9	chr12	21395396	21395455	21395396	-	High_confidence	62	72	184	17.024061	6.625419	chr12	21395009	21401039	LINE|L1|L1PA2	+	chr12	21264648	21395397	MSTRG.10333.2	-	21264648,21274468,21275359,21292163,21293944,21295596,21297403,21300347,21301170,21304426,21306881,21314548,21318781,21334587,21394905	21269767,21274586,21275424,21292336,21294110,21295792,21297568,21300569,21301269,21304573,21306988,21314681,21318923,21334709,21395397	0.722826
neural_progenitor_cell_derived_from_H9	chr10	65570509	65570540	65570521	+	High_confidence	32	60	223	20.632422	6.457976	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.578475
neural_progenitor_cell_derived_from_H9	chr7	134432423	134432458	134432435	-	High_confidence	4	4	15	1.387831	2.706891	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.933333
neural_progenitor_cell_derived_from_H9	chr10	67231038	67231127	67231126	-	High_confidence	10	10	63	5.828890	3.854240	chr10	67230665	67236674	LINE|L1|L1PA3	+	chr10	66069293	67231094	MSTRG.5602.3	-	66069293,66103156,66280469,66379151,66520616,66621691,66766263,66775443,67180316,67219606,67230921	66069489,66103249,66280621,66379352,66520773,66621784,66766416,66775524,67180520,67219870,67231094	0.968254
neural_progenitor_cell_derived_from_H9	chr2	121682617	121682622	121682617	+	High_confidence	5	5	9	0.832699	3.000000	chr2	121682071	121682907	LTR|ERV1|HERVIP10FH-int	-	chr2	121682531	121728426	MSTRG.28878.6	+	121682531,121705767,121727802	121682709,121705907,121728426	0.777778
neural_progenitor_cell_derived_from_H9	chr2	182030747	182030774	182030773	+	High_confidence	53	54	132	12.212913	4.292166	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.893939
neural_progenitor_cell_derived_from_H9	chrX	122222510	122222530	122222515	+	High_confidence	5	6	17	1.572875	3.875000	chrX	122222456	122225451	LTR|ERV1|HERVH-int	+	chrX	122222310	122243918	MSTRG.55854.2	+	122222310,122227324,122227703	122222602,122227430,122243918	0.529412
neural_progenitor_cell_derived_from_H9	chr3	135965673	135965773	135965723	+	High_confidence	14	19	167	15.451186	5.992375	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965715	136147891	MSTRG.36274.2	+	135965715,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106326,136147891	0.976048
neural_progenitor_cell_derived_from_H9	chr16	29709208	29709209	29709208	+	High_confidence	15	15	20	1.850441	4.021928	chr16	29708768	29709406	LTR|ERV1|LTR9B	+	chr16	29709232	29713277	MSTRG.19346.1	+	29709232	29713277	0.900000
neural_progenitor_cell_derived_from_H9	chr11	123061296	123061328	123061296	-	High_confidence	2	2	9	0.832699	3.169925	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	1.000000
neural_progenitor_cell_derived_from_H9	chr9	41107759	41107782	41107759	-	High_confidence	2	2	12	1.110265	3.584963	chr9	41107591	41108193	LTR|ERV1|HERVE-int	+	chr9	41100793	41107797	MSTRG.52228.1	-	41100793,41102730,41103684,41106164,41107593	41101294,41102841,41105159,41106388,41107797	0.500000
neural_progenitor_cell_derived_from_H9	chr5	32403105	32403146	32403105	-	RAMPAGE_only	4	4	16	1.480353	3.452820	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
neural_progenitor_cell_derived_from_H9	chr8	89535675	89535698	89535695	-	High_confidence	14	14	38	3.515839	4.442845	chr8	89535240	89541269	LINE|L1|L1PA2	+	chr8	89496150	89535646	MSTRG.50885.1	-	89496150,89533572,89534444	89497512,89533633,89535646	0.763158
neural_progenitor_cell_derived_from_H9	chrX	105797372	105797374	105797372	-	High_confidence	11	13	18	1.665397	3.734522	chrX	105796906	105802919	LINE|L1|L1PA3	+	chrX	105546087	105797036	MSTRG.55311.1	-	105546087,105656659,105717273,105725357,105796905	105546125,105656821,105717433,105725503,105797036	0.555556
neural_progenitor_cell_derived_from_H9	chr7	73683430	73683453	73683430	-	High_confidence	7	7	36	3.330795	4.593400	chr7	73683365	73683430	LINE|RTE-BovB|MamRTE1	+	chr7	73680917	73683451	DNAJC30|NM_032317.2	-	73680917	73683451	1.000000
neural_progenitor_cell_derived_from_H9	chr5	160199155	160199157	160199155	+	High_confidence	10	16	20	1.850441	3.826875	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.950000
neural_progenitor_cell_derived_from_H9	chr6	28335661	28335695	28335689	+	High_confidence	7	10	21	1.942963	3.721612	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28335668	28343668	MSTRG.43349.1	+	28335668	28343668	0.904762
neural_progenitor_cell_derived_from_H9	chrX	113991907	113991976	113991926	-	RAMPAGE_only	41	41	197	18.226848	6.456762	chrX	113991687	113992070	LTR|ERVL|MLT2A1	-	chrX	113961710	114059289	XACT|ENST00000649506.1	-	113961710,114042367,114059003	113963599,114042484,114059289	0.624365
neural_progenitor_cell_derived_from_H9	chr14	27673213	27673266	27673239	-	High_confidence	22	22	98	9.067163	5.748019	chr14	27673059	27679095	LINE|L1|L1PA3	+	chr14	27321921	27673221	AL390334.1|ENST00000556890.1	-	27321921,27656337,27673028	27322141,27656502,27673221	0.602041
neural_progenitor_cell_derived_from_H9	chr7	39013088	39013167	39013088	+	High_confidence	16	16	90	8.326986	5.013967	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.633333
neural_progenitor_cell_derived_from_H9	chr12	9911080	9911081	9911080	-	High_confidence	6	6	6	0.555132	2.584963	chr12	9910912	9911410	LTR|ERV1|LTR10B2	-	chr12	9873905	9911105	MSTRG.10036.1	-	9873905,9883588	9880987,9911105	0.833333
neural_progenitor_cell_derived_from_H9	chrX	122222349	122222421	122222349	+	High_confidence	47	54	111	10.269950	5.862128	chrX	122222003	122222454	LTR|ERV1|LTR7	+	chrX	122222310	122243918	MSTRG.55854.2	+	122222310,122227324,122227703	122222602,122227430,122243918	0.522523
neural_progenitor_cell_derived_from_H9	chr21	33931146	33931225	33931146	+	High_confidence	21	21	94	8.697075	5.395081	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.585106
neural_progenitor_cell_derived_from_H9	chr18	41775505	41775532	41775505	-	RAMPAGE_only	6	6	28	2.590618	4.032303	chr18	41775014	41781045	LINE|L1|L1HS	+	chr18	41521337	41632124	KC6|ENST00000599934.1	-	41521337,41525354,41564798,41631999	41521496,41525526,41564898,41632124	0.571429
neural_progenitor_cell_derived_from_H9	chr16	30097070	30097084	30097080	+	High_confidence	509	510	991	91.689372	7.439016	chr16	30096875	30097207	LTR|ERV1|LTR10B2	+	chr16	30097082	30116137	MSTRG.19391.2	+	30097082,30103743,30106067	30097419,30105575,30116137	0.525732
neural_progenitor_cell_derived_from_H9	chr21	42524935	42524978	42524962	+	High_confidence	7	7	25	2.313052	4.243856	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42524953	42581434	MSTRG.32584.9	+	42524953,42525775,42534697,42535471,42539511,42542403,42543435,42547102,42554061,42558957,42562077,42563814,42564707,42565826,42566984,42568359,42574817,42579735,42580344	42525179,42525857,42534830,42535550,42539647,42542480,42543602,42547140,42554142,42559089,42562168,42563877,42564793,42565875,42567058,42568438,42574915,42579800,42581434	0.840000
neural_progenitor_cell_derived_from_H9	chr7	40509494	40509498	40509494	+	RAMPAGE_only	6	6	11	1.017743	2.921928	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.727273
neural_progenitor_cell_derived_from_H9	chr20	8114428	8114453	8114448	+	High_confidence	6	6	26	2.405574	3.811231	chr20	8108866	8114917	LINE|L1|L1PA3	-	chr20	8114452	8788521	PLCB1|ENST00000625874.2	+	8114452,8150293,8371381,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8114573,8150371,8371450,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788521	0.653846
neural_progenitor_cell_derived_from_H9	chr4	82020025	82020026	82020025	-	RAMPAGE_only	4	4	6	0.555132	2.584963	chr4	82019561	82022377	LINE|L1|L1PA3	+	chr4	81087369	81215117	PRKG2|NM_006259.2	-	81087369,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81167160,81169662,81171690,81174792,81204586,81214935	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81167224,81169768,81171804,81174959,81205060,81215117	0.833333
neural_progenitor_cell_derived_from_H9	chr7	137254953	137254968	137254953	-	RAMPAGE_only	3	3	12	1.110265	3.459432	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.833333
neural_progenitor_cell_derived_from_H9	chr12	122064308	122064333	122064308	+	RAMPAGE_only	4	4	17	1.572875	3.577820	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.705882
neural_progenitor_cell_derived_from_H9	chr19	9140393	9140428	9140427	+	High_confidence	16	16	56	5.181236	5.106377	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.732143
neural_progenitor_cell_derived_from_H9	chr7	107580229	107580265	107580245	+	High_confidence	282	287	1085	100.386446	7.067005	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.879263
neural_progenitor_cell_derived_from_H9	chr13	52570282	52570324	52570323	+	RAMPAGE_only	8	8	30	2.775662	4.189898	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.566667
neural_progenitor_cell_derived_from_H9	chr6	125219757	125219778	125219777	+	High_confidence	6	8	12	1.110265	3.277613	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.916667
neural_progenitor_cell_derived_from_H9	chr12	69586301	69586339	69586338	+	High_confidence	2	2	9	0.832699	2.947703	chr12	69586385	69586697	SINE|Alu|AluSx1	+	chr12	69585681	69601577	CCT2|NM_001198842.1	+	69585681,69586269,69586752,69587504,69587929,69588149,69589484,69592058,69592975,69593509,69597155,69597637,69597967,69598321,69599862,69601294	69586009,69586344,69586818,69587616,69588006,69588262,69589687,69592159,69593103,69593613,69597275,69597766,69598071,69598421,69600004,69601577	1.000000
neural_progenitor_cell_derived_from_H9	chr12	643627	643660	643635	-	High_confidence	4	4	15	1.387831	2.923231	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	1.000000
neural_progenitor_cell_derived_from_H9	chr13	79400418	79400419	79400418	-	RAMPAGE_only	46	47	52	4.811148	4.938803	chr13	79400211	79400567	LTR|ERVL-MaLR|MLT1A1	-	chr13	79319953	79405788	RBM26|ENST00000267229.11	-	79319953,79322348,79334343,79337101,79341122,79342663,79344247,79344668,79354438,79355219,79358273,79359574,79365577,79366054,79366632,79368729,79370944,79371841,79377378,79378788,79405703	79320710,79322462,79334430,79337302,79341227,79342831,79344322,79344794,79354561,79355384,79358433,79359686,79365718,79366195,79366872,79368990,79371162,79371930,79377515,79378907,79405788	0.923077
neural_progenitor_cell_derived_from_H9	chr3	16697831	16697867	16697866	-	RAMPAGE_only	4	5	26	2.405574	3.970176	chr3	16697677	16698178	LTR|ERV1|MER4CL34	-	chr3	16587524	16648614	MSTRG.34037.3	-	16587524,16592049,16593654,16594532,16595313,16596749,16596987,16597489,16598086,16598451,16637884,16647808	16588713,16592148,16593768,16594583,16595385,16596889,16597051,16597541,16598178,16598598,16637928,16648614	0.692308
neural_progenitor_cell_derived_from_H9	chr11	26965501	26965580	26965501	-	High_confidence	6	7	43	3.978449	4.243159	chr11	26965118	26971134	LINE|L1|L1PA2	+	chr11	26666616	26965580	MSTRG.7644.1	-	26666616,26673401,26678711,26681054,26683756,26686476,26692488,26697163,26698405,26703530,26703792,26709311,26711306,26712640,26965095	26671251,26673529,26678815,26681221,26683843,26686544,26692601,26697252,26698535,26703671,26703947,26709379,26711358,26712706,26965580	0.860465
neural_progenitor_cell_derived_from_H9	chr5	139503241	139503242	139503241	+	High_confidence	12	12	13	1.202787	3.251629	chr5	139502942	139503773	LTR|ERV1|LTR12	+	chr5	139503556	139510142	MSTRG.41817.1	+	139503556,139509859	139503813,139510142	0.923077
neural_progenitor_cell_derived_from_H9	chr12	9910957	9910960	9910957	-	High_confidence	7	9	21	1.942963	3.725651	chr12	9903201	9910908	LTR|ERV1|HERVI-int	-	chr12	9882647	9911022	MSTRG.10036.2	-	9882647,9902512	9902468,9911022	1.000000
neural_progenitor_cell_derived_from_H9	chr7	116724109	116724122	116724121	+	High_confidence	10	10	16	1.480353	3.323231	chr7	116718497	116724489	LINE|L1|L1PA2	-	chr7	116724145	116755414	MET|ENST00000495962.1	+	116724145,116724771,116731667,116739949,116740851,116755354	116724249,116724847,116731859,116740084,116741025,116755414	0.750000
neural_progenitor_cell_derived_from_H9	chr2	79111256	79111263	79111260	+	RAMPAGE_only	4	4	12	1.110265	3.251629	chr2	79105693	79111696	LINE|L1|L1PA3	-	chr2	79120457	79123419	REG1A|NM_002909.4	+	79120457,79120815,79121561,79121987,79122840,79123147	79120514,79120925,79121680,79122125,79122952,79123419	1.000000
neural_progenitor_cell_derived_from_H9	chr3	187862881	187862927	187862899	-	High_confidence	7	8	52	4.811148	5.119513	chr3	187862480	187868516	LINE|L1|L1PA2	+	chr3	187834502	187862885	MSTRG.37142.1	-	187834502,187862826	187836179,187862885	0.826923
neural_progenitor_cell_derived_from_H9	chr8	26395606	26395612	26395611	+	High_confidence	3	3	7	0.647654	2.521641	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.714286
neural_progenitor_cell_derived_from_H9	chr15	49396116	49396202	49396176	-	High_confidence	12	13	96	8.882119	5.702875	chr15	49395983	49402014	LINE|L1|L1PA2	+	chr15	49328451	49396436	MSTRG.16980.4	-	49328451,49331779,49371301,49395974,49396266	49328675,49331849,49371399,49396097,49396436	0.781250
neural_progenitor_cell_derived_from_H9	chr9	26976523	26976553	26976551	+	RAMPAGE_only	5	9	20	1.850441	3.826875	chr9	26976272	26976760	LTR|ERV1|LTR10B2	-	chr9	26956478	27036800	IFT74|ENST00000429045.6	+	26956478,26961948,26978127,26980570,26984256,26984498,26988668,26990133,27009019,27011905,27016906,27018646,27029024,27036449	26956516,26962087,26978263,26980619,26984355,26984559,26988728,26990195,27009158,27011968,27017050,27018687,27029104,27036800	0.750000
neural_progenitor_cell_derived_from_H9	chr13	46467787	46467860	46467835	-	High_confidence	3	3	15	1.387831	3.093069	chr13	46467669	46468268	LTR|ERV1|HERVE-int	+	chr13	46455137	46467836	LINC01198|ENST00000650465.1	-	46455137,46457839,46460944,46464674,46465842,46466608,46467738	46455511,46457913,46461085,46464819,46465987,46466709,46467836	0.866667
neural_progenitor_cell_derived_from_H9	chr18	7946875	7946888	7946875	+	High_confidence	4	4	17	1.572875	3.577820	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.705882
neural_progenitor_cell_derived_from_H9	chr8	116648863	116648893	116648892	-	RAMPAGE_only	2	2	8	0.740177	2.521641	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.875000
neural_progenitor_cell_derived_from_H9	chr12	96316372	96316408	96316407	-	RAMPAGE_only	4	4	17	1.572875	3.616875	chr12	96315942	96321971	LINE|L1|L1PA2	+	chr12	96289257	96303125	CDK17|ENST00000553042.1	-	96289257,96294998,96297269,96297626,96298868,96300303,96303040	96289287,96295122,96297332,96297721,96298983,96300360,96303125	0.529412
neural_progenitor_cell_derived_from_H9	chr11	58578102	58578156	58578130	-	High_confidence	4	5	21	1.942963	4.037401	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58527038	58578220	MSTRG.8038.4	-	58527038,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58576733	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578220	0.904762
neural_progenitor_cell_derived_from_H9	chr9	39810081	39810116	39810115	-	High_confidence	6	6	29	2.683140	3.865765	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.931034
neural_progenitor_cell_derived_from_H9	chr17	69314844	69314880	69314863	-	High_confidence	4	4	24	2.220530	4.186704	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	0.875000
neural_progenitor_cell_derived_from_H9	chr2	77593205	77593309	77593282	-	High_confidence	45	47	257	23.778172	6.101100	chr2	77592831	77598845	LINE|L1|L1PA3	+	chr2	77591740	77593278	MSTRG.28136.9	-	77591740,77593163	77592935,77593278	0.766537
neural_progenitor_cell_derived_from_H9	chr12	93697305	93697323	93697322	+	RAMPAGE_only	7	7	14	1.295309	3.085055	chr12	93697140	93697521	LTR|ERVL-MaLR|MLT1A1	+	chr12	93677716	93850756	CRADD|NM_001320099.1	+	93677716,93678768,93849969	93678028,93679072,93850756	0.642857
neural_progenitor_cell_derived_from_H9	chr2	96303177	96303211	96303177	-	RAMPAGE_only	3	3	16	1.480353	3.452820	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
neural_progenitor_cell_derived_from_H9	chr8	32927967	32927984	32927976	+	High_confidence	469	504	1009	93.354769	7.073871	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927963	33044802	MSTRG.49729.1	+	32927963,32996200,33041634,33044366	32928093,32996316,33041771,33044802	0.840436
neural_progenitor_cell_derived_from_H9	chr18	46868643	46868644	46868643	+	High_confidence	2171	2180	2320	214.651203	6.267782	chr18	46868192	46868774	LTR|ERV1|LTR10B1	+	chr18	46868643	46881162	MSTRG.23728.2	+	46868643,46868811,46874769	46868692,46868990,46881162	0.872414
neural_progenitor_cell_derived_from_H9	chr3	169812903	169812904	169812903	-	High_confidence	17	17	22	2.035486	3.720129	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.909091
neural_progenitor_cell_derived_from_H9	chr6	43013392	43013393	43013392	-	High_confidence	18	18	20	1.850441	3.741446	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
neural_progenitor_cell_derived_from_H9	chr11	3380890	3380918	3380917	+	RAMPAGE_only	6	7	20	1.850441	3.826875	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3383461	3397239	TSSC2|ENST00000526488.5	+	3383461,3384166,3384898,3393085,3395712,3397088	3383546,3384284,3384968,3393159,3395888,3397239	0.500000
neural_progenitor_cell_derived_from_H9	chr1	147173203	147173226	147173219	+	High_confidence	5	5	22	2.035486	3.880180	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.590909
neural_progenitor_cell_derived_from_H9	chr15	100417512	100417533	100417512	-	RAMPAGE_only	4	4	15	1.387831	3.324863	chr15	100417071	100423096	LINE|L1|L1PA2	+	chr15	100402510	100544271	CERS3|ENST00000538112.6	-	100402510,100455892,100469377,100472923,100476085,100479427,100479988,100484549,100490816,100501676,100521666,100528812,100544123	100402865,100456046,100469484,100473052,100476178,100479478,100480046,100484668,100490931,100501850,100521756,100529075,100544271	0.733333
neural_progenitor_cell_derived_from_H9	chr13	30863493	30863494	30863493	+	RAMPAGE_only	6	8	8	0.740177	2.750000	chr13	30863143	30863642	LTR|ERVL|MER74A	+	chr13	30882550	30883395	LINC00545|ENST00000440633.1	+	30882550,30883093	30882659,30883395	0.625000
neural_progenitor_cell_derived_from_H9	chrX	107156211	107156232	107156231	-	RAMPAGE_only	6	6	18	1.665397	3.947703	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107123426	107206433	NUP62CL|ENST00000372466.8	-	107123426,107147742,107153171,107153453,107154095,107167648,107175088,107193028,107206272	107124332,107147809,107153306,107153503,107154246,107167784,107175193,107193072,107206433	0.500000
neural_progenitor_cell_derived_from_H9	chr6	28335749	28335750	28335749	+	High_confidence	87	90	93	8.604553	5.872137	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28335668	28343668	MSTRG.43349.1	+	28335668	28343668	0.967742
neural_progenitor_cell_derived_from_H9	chr12	79045155	79045202	79045181	+	High_confidence	21	23	93	8.604553	5.556923	chr12	79039621	79045645	LINE|L1|L1PA2	-	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.827957
neural_progenitor_cell_derived_from_H9	chr12	9910896	9910918	9910915	-	High_confidence	3	3	9	0.832699	2.750000	chr12	9903201	9910908	LTR|ERV1|HERVI-int	-	chr12	9882647	9911022	MSTRG.10036.2	-	9882647,9902512	9902468,9911022	0.777778
neural_progenitor_cell_derived_from_H9	chr11	57568212	57568291	57568212	-	High_confidence	66	67	185	17.116583	5.965189	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	0.983784
neural_progenitor_cell_derived_from_H9	chr1	200411676	200411691	200411686	+	High_confidence	40	46	204	18.874502	5.692893	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411693	200478360	AC104461.1|ENST00000647823.1	+	200411693,200444617,200472040,200473908,200477967	200411962,200444945,200472119,200474186,200478360	0.754902
neural_progenitor_cell_derived_from_H9	chr12	9568962	9568979	9568962	+	RAMPAGE_only	7	7	14	1.295309	2.664498	chr12	9568603	9569205	LTR|ERV1|HERVE-int	-	chr12	9564388	9576257	MSTRG.10054.8	+	9564388,9567489,9569057,9570765,9571460,9573002,9573465,9574846,9575642,9576117	9565303,9567567,9569202,9570892,9571573,9573093,9573534,9574949,9575717,9576257	1.000000
neural_progenitor_cell_derived_from_H9	chr14	30690345	30690380	30690345	+	RAMPAGE_only	4	4	15	1.387831	3.456565	chr14	30684809	30690837	LINE|L1|L1HS	-	chr14	30622331	30735791	SCFD1|ENST00000396629.6	+	30622331,30633946,30638124,30639776,30643315,30649527,30650564,30653488,30670255,30673256,30673923,30674983,30694772,30700187,30702295,30705822,30707989,30715923,30719324,30721883,30722493,30734789,30735585	30622462,30634037,30638247,30639864,30643405,30649583,30650650,30653588,30670395,30673347,30673997,30675065,30694869,30700258,30702375,30705885,30708065,30715977,30719377,30721917,30722559,30734858,30735791	0.600000
neural_progenitor_cell_derived_from_H9	chr20	47369121	47369181	47369124	-	High_confidence	70	76	165	15.266142	6.227961	chr20	47368952	47369324	LINE|L2|L2c	+	chr20	47210412	47369190	MSTRG.31943.11	-	47210412,47212641,47220257,47221313,47224316,47227202,47229725,47236325,47238895,47246007,47249286,47262287,47276313,47282101,47283570,47287228,47290186,47291795,47294665,47298728,47310055,47347855,47369041	47210897,47212725,47220324,47221474,47224556,47227281,47229806,47236516,47239138,47246517,47249439,47262428,47276795,47282217,47283648,47287284,47290274,47291888,47294779,47298947,47310204,47347926,47369190	0.872727
neural_progenitor_cell_derived_from_H9	chr20	50172521	50172595	50172589	+	High_confidence	4	4	16	1.480353	3.500000	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172589	50176671	LINC01273|ENST00000411453.2	+	50172589,50172922,50176280	50172788,50173017,50176671	0.812500
neural_progenitor_cell_derived_from_H9	chr12	21214670	21214702	21214701	+	High_confidence	9	9	23	2.128008	4.201841	chr12	21209060	21215087	LINE|L1|L1PA2	-	chr12	21214667	21269755	MSTRG.10329.18	+	21214667,21222299,21224721,21267650,21269646	21214744,21222364,21224839,21267771,21269755	0.521739
neural_progenitor_cell_derived_from_H9	chr1	6200833	6200864	6200863	-	High_confidence	13	13	42	3.885927	3.593194	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.976190
neural_progenitor_cell_derived_from_H9	chr11	102374727	102374748	102374727	+	RAMPAGE_only	4	4	13	1.202787	3.251629	chr11	102369166	102375192	LINE|L1|L1PA2	-	chr11	102347373	102378663	BIRC2|ENST00000613397.4	+	102347373,102348597,102350843,102362895,102363667,102368305,102377495,102377856,102377989	102347845,102350749,102350943,102362974,102363716,102368548,102377750,102377898,102378663	0.846154
neural_progenitor_cell_derived_from_H9	chr5	14653390	14653391	14653390	-	High_confidence	96	96	96	8.882119	3.773590	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	1.000000
neural_progenitor_cell_derived_from_H9	chr8	143281669	143281687	143281686	-	High_confidence	110	128	353	32.660291	4.220977	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.869688
neural_progenitor_cell_derived_from_H9	chr2	156254917	156254963	156254962	-	High_confidence	53	56	253	23.408084	6.915591	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156008587	156254932	MSTRG.29379.1	-	156008587,156022671,156024469,156205381,156254777	156021899,156022817,156024607,156205438,156254932	0.517787
neural_progenitor_cell_derived_from_H9	chr12	69778975	69778985	69778975	+	High_confidence	19	19	33	3.053228	4.140320	chr12	69773410	69779441	LINE|L1|L1HS	-	chr12	69778966	69817117	RAB3IP|ENST00000553099.5	+	69778966,69784719,69794436,69795140,69800208,69801608,69812777,69812963,69815363	69779096,69784815,69794514,69795344,69800337,69801721,69812877,69813033,69817117	0.515152
neural_progenitor_cell_derived_from_H9	chr15	83208368	83208380	83208379	-	High_confidence	4	4	10	0.925221	3.169925	chr15	83208333	83208482	SINE|MIR|MIR3	+	chr15	83127752	83208018	HDGFL3|ENST00000299633.6	-	83127752,83151214,83157414,83157902,83163998,83207330	83139275,83151361,83157573,83158041,83164075,83208018	0.900000
neural_progenitor_cell_derived_from_H9	chr12	56157322	56157354	56157353	+	High_confidence	5	7	25	2.313052	3.188722	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.920000
neural_progenitor_cell_derived_from_H9	chr2	20106826	20106845	20106827	-	High_confidence	7	10	18	1.665397	2.974938	chr2	20105981	20107080	LTR|ERV1|LTR12D	-	chr2	20063855	20106829	AC098828.3|ENST00000430429.1	-	20063855,20106739	20064511,20106829	0.611111
neural_progenitor_cell_derived_from_H9	chr7	101308269	101308325	101308324	+	High_confidence	9	10	30	2.775662	4.415061	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.966667
neural_progenitor_cell_derived_from_H9	chr8	57746128	57746129	57746128	+	High_confidence	9	9	9	0.832699	2.641604	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	1.000000
neural_progenitor_cell_derived_from_H9	chr9	20658312	20658347	20658338	+	High_confidence	59	72	359	33.215423	6.463378	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658326	20795057	MSTRG.51810.3	+	20658326,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20790383	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20795057	0.718663
neural_progenitor_cell_derived_from_H9	chr19	17823626	17823627	17823626	-	RAMPAGE_only	12	12	12	1.110265	3.084963	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
neural_progenitor_cell_derived_from_H9	chr7	33351952	33351978	33351977	+	High_confidence	33	41	141	13.045612	5.714440	chr7	33351872	33352111	LTR|ERV1|LTR27B	-	chr7	33351926	33605626	MSTRG.46599.12	+	33351926,33357854,33367766,33383665,33387991,33505462,33533953,33604864,33605194	33352049,33357995,33367862,33383838,33388144,33505645,33534176,33604975,33605626	0.929078
neural_progenitor_cell_derived_from_H9	chr13	51170271	51170287	51170271	+	RAMPAGE_only	3	4	10	0.925221	2.921928	chr13	51170316	51173284	LTR|ERV1|HERVH-int	+	chr13	51187389	51187874	MSTRG.13193.1	+	51187389	51187874	0.800000
neural_progenitor_cell_derived_from_H9	chr17	40648653	40648659	40648653	-	High_confidence	11	11	29	2.683140	4.090234	chr17	40648546	40648925	LINE|L2|L2b	+	chr17	40625002	40648654	SMARCE1|ENST00000643318.1	-	40625002,40630713,40631591,40632194,40635930,40636394,40637491,40645795,40647772	40628993,40630924,40631693,40632367,40636102,40636526,40637572,40645847,40648654	0.965517
neural_progenitor_cell_derived_from_H9	chr2	170360770	170360831	170360773	+	High_confidence	152	203	449	41.542410	4.689277	chr2	170360609	170360997	LTR|ERVL-MaLR|MLT1A1	+	chr2	170360783	170655171	MSTRG.29612.9	+	170360783,170369221,170382015,170383072,170383709,170386188,170387105,170391519,170392380,170400187,170401480,170402847,170404246,170405544,170407714,170443966,170463367,170466505,170498591,170499645,170501784,170514920,170519437,170542905,170543891,170651627,170652107,170652982	170360917,170369377,170382112,170383189,170383814,170386272,170387308,170391618,170392495,170400314,170401691,170402995,170404400,170405633,170407844,170444046,170463445,170466711,170498703,170499808,170501865,170515022,170519540,170542966,170543988,170651734,170652154,170655171	0.875278
neural_progenitor_cell_derived_from_H9	chr15	51603751	51603771	51603751	-	High_confidence	3	3	8	0.740177	2.500000	chr15	51603584	51603891	SINE|Alu|AluY	+	chr15	51547331	51603701	DMXL2|ENST00000560421.5	-	51547331,51563380,51564124,51565087,51568486,51576055,51603606	51547408,51563447,51564260,51565166,51568558,51576181,51603701	0.500000
neural_progenitor_cell_derived_from_H9	chr17	42028606	42028613	42028612	-	High_confidence	6	7	12	1.110265	3.277613	chr17	42028463	42028599	LINE|CR1|L3b	-	chr17	42025575	42028689	ZNF385C|ENST00000461831.1	-	42025575,42027617,42028049,42028566	42027133,42027728,42028246,42028689	0.916667
neural_progenitor_cell_derived_from_H9	chr4	119279661	119279682	119279681	+	RAMPAGE_only	5	6	19	1.757919	3.576618	chr4	119274113	119280127	LINE|L1|L1PA2	-	chr4	119239639	119294638	USP53|ENST00000509769.5	+	119239639,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119266299,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119266333,119267482,119268420,119269837,119272034,119273708,119291261,119294638	0.894737
neural_progenitor_cell_derived_from_H9	chr16	30096880	30096951	30096901	-	High_confidence	10	10	67	6.198979	5.226318	chr16	30096875	30097207	LTR|ERV1|LTR10B2	+	chr16	30092636	30096912	YPEL3|ENST00000566595.5	-	30092636,30094788,30095102,30095251,30096615	30092799,30094897,30095146,30095434,30096912	0.507463
neural_progenitor_cell_derived_from_H9	chr3	132627106	132627117	132627106	-	High_confidence	6	8	14	1.295309	3.378783	chr3	132627080	132627408	LTR|ERV1|MER61C	+	chr3	132576943	132627119	MSTRG.36185.6	-	132576943,132578795,132579491,132603228,132605097,132618633,132619467,132626690,132627061	132577015,132578881,132579558,132603327,132605205,132618772,132619545,132626817,132627119	1.000000
neural_progenitor_cell_derived_from_H9	chr11	34692374	34692454	34692453	+	High_confidence	29	31	152	14.063355	6.014114	chr11	34691292	34692830	LINE|L1|L1PA2	-	chr11	34692343	34877512	MSTRG.7765.1	+	34692343,34709270,34714693,34715056,34732284,34754457,34877009	34692889,34710854,34714807,34715234,34732429,34754607,34877512	0.644737
neural_progenitor_cell_derived_from_H9	chrX	76173403	76173406	76173403	+	High_confidence	5	5	12	1.110265	3.095795	chrX	76173221	76173522	SINE|Alu|AluJb	-	chrX	76173039	76178196	PBDC1|ENST00000373357.3	+	76173039,76173584,76174889,76175472,76177615	76173168,76173650,76174949,76175613,76178196	0.916667
neural_progenitor_cell_derived_from_H9	chr3	58842607	58842616	58842615	-	RAMPAGE_only	10	10	21	1.942963	3.576618	chr3	58842154	58848179	LINE|L1|L1PA2	+	chr3	58742009	59049989	C3orf67|NM_198463.2	-	58742009,58753768,58806394,58831685,58863557,58866565,58867816,58869327,58870172,58884544,58913707,58937647,59039556,59046228,59047164,59049934	58742572,58753863,58806456,58831889,58863892,58866688,58867936,58869490,58870309,58884709,58913864,58937762,59039629,59046322,59047254,59049989	0.523810
neural_progenitor_cell_derived_from_H9	chr11	67620192	67620239	67620234	+	High_confidence	5	6	18	1.665397	3.572469	chr11	67618852	67620425	LTR|ERV1|LTR12C	+	chr11	67619975	67630254	MSTRG.8448.1	+	67619975,67626053	67620536,67630254	0.777778
neural_progenitor_cell_derived_from_H9	chr7	137182054	137182075	137182054	-	High_confidence	7	7	16	1.480353	3.375000	chr7	137181608	137187601	LINE|L1|L1PA3	+	chr7	136784074	137181771	AC009264.1|ENST00000439694.5	-	136784074,137031904,137032793,137181607	136785891,137031963,137032913,137181771	0.562500
neural_progenitor_cell_derived_from_H9	chr6	122482061	122482086	122482061	+	High_confidence	215	236	675	62.452397	7.448552	chr6	122481961	122482259	SINE|Alu|AluYe5	-	chr6	122482087	122725890	MSTRG.45137.8	+	122482087,122509451,122581764,122585492,122585920,122633282,122675077,122717786,122725127	122482266,122509525,122581844,122585553,122586007,122633367,122675144,122717963,122725890	0.810370
neural_progenitor_cell_derived_from_H9	chr2	151704888	151704889	151704888	-	RAMPAGE_only	10	10	13	1.202787	3.084963	chr2	151698868	151704889	LINE|L1|L1PA2	-	chr2	151689197	151706931	NEB|ENST00000489048.1	-	151689197,151691863,151692058,151692260,151694322,151694521,151695577,151696636,151697147,151697349,151697543,151706880	151690825,151691968,151692166,151692362,151694436,151694629,151695682,151696735,151697252,151697457,151697648,151706931	0.692308
neural_progenitor_cell_derived_from_H9	chr2	55618850	55618870	55618869	-	High_confidence	7	7	16	1.480353	3.506891	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.750000
neural_progenitor_cell_derived_from_H9	chr7	15547746	15547804	15547747	-	RAMPAGE_only	9	12	37	3.423317	3.872049	chr7	15547309	15553333	LINE|L1|L1PA2	+	chr7	15200317	15562015	AGMO|NM_001004320.1	-	15200317,15365513,15366139,15385445,15387405,15390670,15390839,15394112,15418557,15431004,15544771,15560140,15561719	15201359,15365619,15366222,15385562,15387540,15390750,15390905,15394179,15418653,15431108,15544923,15560271,15562015	0.891892
neural_progenitor_cell_derived_from_H9	chr12	122592764	122592815	122592764	+	High_confidence	2	2	12	1.110265	3.251629	chr12	122591840	122593220	LTR|ERV1|LTR12C	+	chr12	122592817	122602644	KNTC1|ENST00000535186.1	+	122592817,122594275,122602568	122593184,122594385,122602644	0.583333
neural_progenitor_cell_derived_from_H9	chr2	174409993	174410020	174410019	+	High_confidence	129	131	226	20.909988	5.512346	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410036	174428859	SCRN3|ENST00000548921.5	+	174410036,174422884,174424474,174427712	174410225,174423047,174424649,174428859	0.827434
neural_progenitor_cell_derived_from_H9	chr19	18227905	18227906	18227905	-	RAMPAGE_only	13	13	13	1.202787	3.546594	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
neural_progenitor_cell_derived_from_H9	chr1	19344388	19344412	19344388	-	RAMPAGE_only	3	3	8	0.740177	2.807355	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.875000
neural_progenitor_cell_derived_from_H9	chr19	17336685	17336720	17336685	+	High_confidence	13	13	39	3.608361	4.323613	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.846154
neural_progenitor_cell_derived_from_H9	chr3	33446606	33446610	33446609	+	High_confidence	488	518	932	86.230569	5.913897	chr3	33446461	33447026	LTR|ERV1|LTR12C	+	chr3	33446612	33460309	MSTRG.34417.3	+	33446612,33453035	33447137,33460309	0.951717
neural_progenitor_cell_derived_from_H9	chrX	9534911	9534942	9534911	+	RAMPAGE_only	4	4	10	0.925221	3.121928	chrX	9534757	9534974	LINE|L1|L1MB1	-	chrX	9531038	9688149	TBL1X|ENST00000647172.1	+	9531038,9640272,9654214,9684042,9688016	9531088,9640360,9654322,9684188,9688149	0.500000
neural_progenitor_cell_derived_from_H9	chr15	97295854	97295943	97295854	+	High_confidence	31	32	238	22.020253	6.821720	chr15	97289925	97296313	LINE|L1|L1PA3	-	chr15	97295880	97432094	MSTRG.18341.3	+	97295880,97411191,97429048,97431790	97296323,97411278,97429889,97432094	0.542017
neural_progenitor_cell_derived_from_H9	chr5	147559948	147559996	147559993	+	High_confidence	244	245	475	43.947983	7.035375	chr5	147559899	147560053	DNA|hAT-Charlie|MER5A1	-	chr5	147559993	147662009	JAKMIP2-AS1|NR_038902.1	+	147559993,147594359,147595439,147660452	147560137,147594477,147595540,147662009	0.549474
neural_progenitor_cell_derived_from_H9	chr12	8788246	8788253	8788252	+	High_confidence	161	173	281	25.998702	6.204497	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.811388
neural_progenitor_cell_derived_from_H9	chr17	50271485	50271488	50271487	+	High_confidence	34	66	66	6.106457	4.560816	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
neural_progenitor_cell_derived_from_H9	chr2	153403509	153403567	153403553	+	High_confidence	14	14	88	8.141942	5.345647	chr2	153397921	153403952	LINE|L1|L1PA2	-	chr2	153403592	153404634	MSTRG.29272.1	+	153403592	153404634	0.636364
neural_progenitor_cell_derived_from_H9	chr14	102083175	102083227	102083189	-	RAMPAGE_only	4	4	17	1.572875	3.202820	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.941176
neural_progenitor_cell_derived_from_H9	chr12	51568249	51568284	51568283	+	RAMPAGE_only	2	2	7	0.647654	2.521641	chr12	51562631	51568657	LINE|L1|L1HS	-	chr12	51590924	51723140	SCN8A|ENST00000638820.1	+	51590924,51662763,51684173,51686367,51687090,51689004,51699569,51701143,51702772,51705416,51706421,51721545	51590999,51663093,51684292,51686457,51687219,51689096,51699791,51701207,51702914,51705623,51706715,51723140	0.857143
neural_progenitor_cell_derived_from_H9	chr14	76258254	76258255	76258254	+	RAMPAGE_only	7	8	11	1.017743	2.921928	chr14	76257889	76258388	LTR|ERVL-MaLR|MLT1K	-	chr14	76310711	76498475	ESRRB|ENST00000512784.6	+	76310711,76439340,76462544,76482015,76482597,76491446,76498213	76310916,76439750,76462661,76482126,76482759,76491716,76498475	0.636364
neural_progenitor_cell_derived_from_H9	chr1	49257817	49257836	49257817	-	High_confidence	5	7	23	2.128008	4.023137	chr1	49257178	49257818	LINE|L1|L1PA3	-	chr1	48534172	49257812	MSTRG.1447.2	-	48534172,48534889,48539641,48587003,48590832,48634492,48653336,48663151,48867190,49045583,49245769,49257723	48534293,48534916,48539738,48587166,48590985,48634604,48653451,48663241,48867230,49045800,49245864,49257812	0.608696
neural_progenitor_cell_derived_from_H9	chr3	54639819	54639857	54639856	-	High_confidence	11	11	44	4.070971	4.507433	chr3	54639752	54640204	LTR|ERV1|LTR7	-	chr3	54632121	54639857	ESRG|ENST00000583516.1	-	54632121,54633558,54634460,54637690	54632807,54633740,54634565,54639857	0.909091
neural_progenitor_cell_derived_from_H9	chrX	114040387	114040388	114040387	+	High_confidence	303	305	413	38.211615	6.173194	chrX	114040091	114040488	LTR|ERV1|LTR7	+	chrX	114040304	114058934	MSTRG.55514.2	+	114040304,114042335,114055650,114057855	114040636,114042533,114056548,114058934	0.852300
neural_progenitor_cell_derived_from_H9	chr10	84279967	84279968	84279967	+	High_confidence	34	36	41	3.793405	4.252975	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279990	84288995	LINC00858|ENST00000437892.1	+	84279990,84288223,84288593	84280065,84288420,84288995	0.731707
neural_progenitor_cell_derived_from_H9	chr17	47067498	47067534	47067498	-	High_confidence	60	65	244	22.575385	5.555655	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.827869
neural_progenitor_cell_derived_from_H9	chr15	65300634	65300635	65300634	-	High_confidence	27	27	28	2.590618	4.254525	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65266576	65300618	PARP16|ENST00000558873.1	-	65266576,65270934,65282546,65300196	65266768,65271072,65282632,65300618	0.785714
neural_progenitor_cell_derived_from_H9	chr4	110410956	110411061	110410982	+	RAMPAGE_only	9	9	58	5.366280	4.838681	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110365732	110506258	ENPEP|ENST00000510961.1	+	110365732,110488540,110491032,110500028,110506182	110365804,110488682,110491164,110500163,110506258	0.586207
neural_progenitor_cell_derived_from_H9	chr15	33194680	33194715	33194680	-	High_confidence	5	5	17	1.572875	3.734522	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.823529
neural_progenitor_cell_derived_from_H9	chr7	87039827	87039870	87039827	-	High_confidence	7	7	29	2.683140	4.423252	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.655172
neural_progenitor_cell_derived_from_H9	chr7	152082433	152082459	152082433	+	RAMPAGE_only	2	3	12	1.110265	3.084963	chr7	152082186	152082768	LTR|ERV1|LTR10C	-	chr7	152079274	152104891	GALNT11|ENST00000422997.6	+	152079274,152094189,152100797,152103111	152079408,152094522,152100921,152104891	0.833333
neural_progenitor_cell_derived_from_H9	chr17	41871790	41871809	41871790	-	RAMPAGE_only	4	4	12	1.110265	2.663533	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41866916	41918962	ACLY|ENST00000590151.5	-	41866916,41868708,41869042,41869473,41871688,41872031,41873810,41878102,41878796,41883121,41884192,41886111,41887598,41892278,41893032,41896619,41897748,41898630,41901695,41904728,41905521,41906527,41907441,41908988,41909509,41910221,41912419,41913714,41918879	41867904,41868785,41869125,41869587,41871832,41872182,41873965,41878196,41878924,41883232,41884274,41886308,41887703,41892447,41893174,41896649,41897839,41898785,41901813,41904790,41905658,41906646,41907572,41909068,41909700,41910284,41912542,41913900,41918962	0.916667
neural_progenitor_cell_derived_from_H9	chr3	129001512	129001524	129001512	-	RAMPAGE_only	5	5	13	1.202787	3.238901	chr3	129001421	129001474	DNA|hAT-Tip100?|MamRep1879	-	chr3	128970935	128994143	KIAA1257|NM_020741.2	-	128970935,128975778,128976978,128978044,128987615,128988727,128993042,128993979	128971433,128975903,128977066,128978185,128987829,128988918,128993336,128994143	0.538462
neural_progenitor_cell_derived_from_H9	chr12	18753628	18753681	18753628	+	RAMPAGE_only	11	11	58	5.366280	5.280226	chr12	18753545	18754527	LTR|ERV1|LTR1D	-	chr12	18796451	18799726	MSTRG.10302.1	+	18796451,18797400	18796496,18799726	0.534483
neural_progenitor_cell_derived_from_H9	chr12	53464795	53464850	53464849	+	RAMPAGE_only	4	4	11	1.017743	2.921928	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.909091
neural_progenitor_cell_derived_from_H9	chr4	112646053	112646246	112646158	+	High_confidence	27	29	200	18.504414	6.206896	chr4	112645995	112646266	SINE|Alu|AluSx3	-	chr4	112646889	112647338	LARP7|ENST00000503316.1	+	112646889,112647052,112647201	112646955,112647127,112647338	0.600000
neural_progenitor_cell_derived_from_H9	chr5	81473717	81473753	81473717	-	RAMPAGE_only	2	2	9	0.832699	2.947703	chr5	81473245	81473683	LINE|L1|L1PA8	-	chr5	81419978	81448063	SSBP2|ENST00000510060.5	-	81419978,81428584,81437429,81440557,81442652,81446867,81447909	81420533,81428683,81437458,81440636,81442723,81446922,81448063	0.888889
neural_progenitor_cell_derived_from_H9	chr12	9407453	9407507	9407506	-	High_confidence	155	176	580	53.662801	5.852166	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9397063	9407591	MSTRG.10045.1	-	9397063,9397614,9398381,9399794,9400235,9401746,9402426,9406307,9407307	9397214,9397689,9398484,9400015,9400326,9401859,9402553,9406398,9407591	0.987931
neural_progenitor_cell_derived_from_H9	chr2	230342104	230342131	230342130	+	High_confidence	3	3	8	0.740177	2.521641	chr2	230337069	230342513	LINE|L1|L1HS	-	chr2	230342069	230372744	SP140L|ENST00000458341.1	+	230342069,230357804,230358963,230361613,230370907,230371597	230342173,230357967,230359132,230361697,230370967,230372744	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	52569721	52569722	52569721	-	High_confidence	20	20	20	0.682390	4.121928	chr15	52569688	52569809	LINE|L2|L2	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	0.550000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	80485592	80485596	80485592	+	High_confidence	87	89	158	5.390881	6.264762	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.791139
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	133192502	133192547	133192546	+	High_confidence	4	4	8	0.272956	2.750000	chr3	133192199	133192592	LINE|L2|L2	-	chr3	133192774	133380171	TMEM108|ENST00000510183.1	+	133192774,133229269,133379751	133192827,133229351,133380171	0.750000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	6866488	6866553	6866532	-	High_confidence	8	8	39	1.330660	4.418723	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.897436
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	67183286	67183296	67183286	-	High_confidence	5	6	14	0.477673	3.807355	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67176729	67183941	KIAA0895L|ENST00000563902.1	-	67176729,67178009,67178198,67179429,67179814,67180040,67183261	67176975,67178107,67178504,67179562,67179958,67180666,67183941	0.785714
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	109383446	109383500	109383446	-	High_confidence	29	31	115	3.923742	5.067509	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.991304
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	43557694	43557759	43557758	-	High_confidence	16	18	65	2.217767	5.506833	chr5	43557737	43557841	DNA|hAT-Charlie|MER33	-	chr5	43547727	43557758	PAIP1|ENST00000515338.1	-	43547727,43555829,43557350	43547913,43555961,43557758	0.553846
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100831483	100831505	100831484	+	RAMPAGE_only	5	7	14	0.477673	3.238901	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100833277	100847301	MEG3|ENST00000455531.1	+	100833277,100845457	100836300,100847301	0.642857
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	11963557	11963821	11963700	-	RAMPAGE_only	15	16	262	8.939308	5.604655	chr11	11963645	11963694	DNA|hAT-Ac|OldhAT1	-	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.992366
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	194486571	194486632	194486631	-	High_confidence	4	4	16	0.545912	3.750000	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402688	194486659	MSTRG.17654.6	-	194402688,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194486659	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	52615356	52615363	52615356	-	RAMPAGE_only	2	2	7	0.238836	2.584963	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52585472	52609461	PBRM1|ENST00000462207.1	-	52585472,52587352,52589069,52603520,52609312	52586688,52587510,52589255,52603732,52609461	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	134285	134301	134285	+	High_confidence	2	2	10	0.341195	2.646439	chr10	134050	134295	DNA|TcMar-Tigger|MER44A	-	chr10	134464	252470	ZMYND11|ENST00000397962.8	+	134464,179993,209888,221194,236837,237584,239437,240055,240892,242020,246765,247397,248335,248902,252347	134786,180128,210048,221356,236915,237677,239525,240111,240970,242139,246973,247466,248608,249088,252470	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	12802576	12802577	12802576	-	High_confidence	12	12	13	0.443553	3.188722	chr18	12802496	12804008	LINE|L1|L1MA6	+	chr18	12785480	12802153	PTPN2|ENST00000591901.5	-	12785480,12793481,12794383,12801969	12785844,12793574,12794485,12802153	0.692308
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	85626286	85626379	85626378	+	RAMPAGE_only	7	7	72	2.456604	4.871873	chr14	85626237	85626418	SINE|tRNA-RTE|MamSINE1	-	chr14	85530145	85654426	MSTRG.7290.4	+	85530145,85621138,85632234	85533993,85632195,85654426	0.986111
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	12522463	12522471	12522463	+	RAMPAGE_only	4	4	9	0.307075	2.500000	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	148433316	148433322	148433316	+	RAMPAGE_only	4	4	12	0.409434	3.277613	chr1	148432841	148433382	LTR|ERV1|MER66C	-	chr1	148442300	148448609	MSTRG.1587.1	+	148442300	148448609	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	75945195	75945207	75945195	+	RAMPAGE_only	3	3	9	0.307075	3.169925	chr3	75945081	75945496	LINE|L2|L2a	-	chr3	75906801	76149036	MSTRG.16917.3	+	75906801,75937480,76073406	75906960,76073251,76149036	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	380609	380634	380633	+	High_confidence	3	3	8	0.272956	2.750000	chr20	380404	380708	SINE|Alu|AluY	+	chr20	380628	397559	TRIB3|NM_021158.4	+	380628,388010,391286,396197	381169,388301,391579,397559	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	77636488	77636514	77636488	+	RAMPAGE_only	2	2	8	0.272956	2.521641	chr12	77636484	77637152	LINE|L1|L1PA7	+	chr12	77593646	77656386	MSTRG.5600.3	+	77593646,77650688	77650534,77656386	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	7183986	7184006	7183995	+	RAMPAGE_only	2	2	7	0.238836	2.584963	chr16	7183791	7184414	LINE|L2|L2a	-	chr16	7163537	7229498	MSTRG.8778.1	+	7163537,7186678,7217149	7186159,7216961,7229498	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	191245105	191245149	191245105	+	High_confidence	3	3	16	0.545912	3.373557	chr2	191245108	191245343	LINE|L1|L1M4b	+	chr2	191245184	191346274	MYO1B|ENST00000418908.5	+	191245184,191276886,191296110,191329934,191341460,191346235	191245257,191277030,191296226,191330029,191341565,191346274	0.937500
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	33864076	33864128	33864076	+	RAMPAGE_only	4	4	27	0.921226	3.810081	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	111958980	111958988	111958980	-	RAMPAGE_only	11	11	20	0.682390	3.300559	chr5	111958321	111959218	LINE|L1|L1ME3A	+	chr5	111729302	111976931	NREP|NM_001142474.1	-	111729302,111735429,111975303,111976709	111731046,111735507,111975378,111976931	0.850000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	68857329	68857371	68857370	+	RAMPAGE_only	2	2	7	0.238836	2.521641	chr6	68856237	68857790	LTR|ERVL-MaLR|THE1B-int	+	chr6	68783379	68875030	MSTRG.20629.1	+	68783379,68801309	68801262,68875030	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	128104796	128104817	128104796	-	RAMPAGE_only	3	3	10	0.341195	2.921928	chr3	128104760	128104822	LINE|CR1|L3	-	chr3	128081181	128100744	RUVBL1|ENST00000478892.1	-	128081181,128082482,128087705,128097299,128098881,128100594	128081409,128082574,128087844,128097498,128098945,128100744	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	96979379	96979436	96979435	-	RAMPAGE_only	3	4	17	0.580031	3.452820	chr7	96979316	96979617	SINE|Alu|AluSz	+	chr7	96965526	97004298	MSTRG.21914.3	-	96965526,96978346,97003508	96969118,96979591,97004298	0.941176
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	118139096	118139097	118139096	+	High_confidence	11	11	11	0.375314	2.663533	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	111298541	111298969	111298646	-	RAMPAGE_only	31	31	377	12.863051	4.900738	chrX	111298504	111298720	SINE|MIR|MIR3	+	chrX	111293778	111411146	DCX|NM_000555.3	-	111293778,111312641,111330918,111333050,111400989,111410034,111410753	111301743,111312736,111331041,111333153,111401330,111410420,111411146	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	110179297	110179309	110179297	-	RAMPAGE_only	4	4	9	0.307075	2.641604	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	1997251	1997336	1997335	-	RAMPAGE_only	16	21	132	4.503774	6.145805	chr2	1997219	1997369	SINE|MIR|MIRb	+	chr2	1789147	1979220	MYT1L|ENST00000650399.1	-	1789147,1792320,1801695,1809075,1839148,1840759,1851640,1886538,1887487,1889240,1892036,1942981,1979164	1792007,1792464,1801799,1809167,1839370,1840843,1851703,1886607,1887609,1889477,1892287,1943334,1979220	0.946970
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	143228011	143228038	143228011	+	RAMPAGE_only	17	17	60	2.047170	5.334092	chr2	143227673	143228117	LINE|L1|L1ME4a	-	chr2	143247289	143437042	ARHGAP15|ENST00000469117.5	+	143247289,143250510,143435600,143436912	143247404,143250600,143435699,143437042	0.516667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	111940125	111940204	111940125	-	RAMPAGE_only	3	3	29	0.989465	3.624519	chr7	111940063	111940135	LINE|RTE-BovB|MamRTE1	-	chr7	111728273	112004131	DOCK4|ENST00000445943.5	-	111728273,111732225,111735053,111736916,111739133,111739395,111741093,111741539,111742012,111746333,111747266,111755514,111758623,111760180,111765117,111767031,111769528,111778275,111782863,111783856,111784096,111788661,111790456,111808820,111809300,111811873,111822361,111834587,111840762,111844762,111846998,111863371,111867983,111869573,111871989,111872268,111872466,111877029,111895611,111900373,111901676,111915778,111935539,111940109,111944810,111945716,111977131,111984305,111989014,111994134,111998447,112000493,112004047	111728720,111732287,111735167,111736989,111739243,111739477,111741214,111741661,111742132,111746417,111747443,111755601,111758790,111760322,111765222,111767118,111769677,111778369,111782924,111783952,111784123,111788747,111790605,111808879,111809401,111811949,111822456,111834686,111840870,111844897,111847126,111863564,111868154,111869655,111872090,111872352,111872564,111877186,111895718,111900536,111901801,111915904,111935628,111940242,111944871,111945798,111977283,111984390,111989163,111994231,111998503,112000534,112004131	0.931034
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	5699517	5699539	5699517	+	High_confidence	3	3	11	0.375314	2.921928	chr10	5699528	5699730	LINE|L1|L1M7	+	chr10	5699492	5714207	FAM208B|ENST00000463468.5	+	5699492,5712393,5712822,5714134	5699737,5712539,5712918,5714207	0.636364
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	48662919	48662935	48662934	+	RAMPAGE_only	9	9	20	0.682390	3.921928	chr18	48662701	48663071	LINE|L1|L1ME3A	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	0.850000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	32505904	32505922	32505921	+	RAMPAGE_only	4	4	11	0.375314	3.277613	chr5	32505649	32506189	LTR|ERVL-MaLR|MLT1K	+	chr5	32531632	32601323	SUB1|ENST00000506237.5	+	32531632,32588511,32591562,32598960,32601004	32531916,32588584,32591685,32599069,32601323	0.727273
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	122882292	122882301	122882295	+	High_confidence	2	2	7	0.238836	2.521641	chr11	122881733	122882629	LINE|L1|L1ME3D	-	chr11	122882527	122905892	C11orf63|NM_199124.2	+	122882527,122885760,122903924,122905171	122882972,122886193,122904444,122905892	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	128185577	128185578	128185577	-	RAMPAGE_only	6	6	6	0.204717	2.584963	chr9	128185400	128185541	SINE|MIR|MIR3	-	chr9	128166151	128190710	CIZ1|ENST00000415526.5	-	128166151,128166758,128167094,128169051,128169405,128170019,128176350,128177565,128178368,128178708,128180414,128180720,128185546,128190328,128190687	128166406,128166880,128167164,128169201,128169519,128170107,128176475,128177763,128178490,128179415,128180523,128180799,128185776,128190444,128190710	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	5295358	5295375	5295374	-	High_confidence	3	3	8	0.272956	2.500000	chr18	5295086	5295338	LINE|L1|L1M4b	-	chr18	5289018	5295702	ZBTB14|NM_001243702.1	-	5289018,5293243,5293971,5295651	5292204,5293327,5294001,5295702	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	61955381	61955402	61955384	-	RAMPAGE_only	3	3	12	0.409434	2.845351	chr17	61954857	61955361	LTR|ERVL-MaLR|MLT1D	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.916667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	196593883	196593938	196593892	-	High_confidence	7	8	35	1.194182	4.490297	chr2	196593879	196593974	SINE|MIR|MIRc	+	chr2	196199350	196593692	HECW2|ENST00000644978.1	-	196199350,196215864,196217007,196220038,196220794,196222210,196225771,196228101,196240448,196242083,196253919,196257822,196271192,196274020,196278527,196292564,196306487,196307129,196307934,196317273,196318551,196320338,196322477,196324979,196329574,196334423,196343656,196433131,196593507	196201388,196215977,196217093,196220153,196220941,196222340,196225870,196228254,196240562,196242204,196254029,196257906,196271289,196274123,196278662,196292750,196306612,196307233,196308085,196317369,196319904,196320439,196322620,196325149,196329650,196334518,196343764,196433458,196593692	0.800000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50756939	50756950	50756949	+	High_confidence	6	6	14	0.477673	3.467720	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.714286
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	22028398	22028425	22028424	+	RAMPAGE_only	10	15	46	1.569497	4.730416	chr8	22028341	22028629	SINE|Alu|AluSz	-	chr8	22025248	22036682	NPM2|ENST00000621538.4	+	22025248,22025435,22025646,22033129,22034108,22034509,22036492,22036637	22025306,22025521,22025772,22033223,22034275,22034544,22036526,22036682	0.804348
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	9569063	9569087	9569086	+	RAMPAGE_only	2	2	8	0.272956	2.521641	chr12	9568603	9569205	LTR|ERV1|HERVE-int	-	chr12	9557313	9576275	AC092821.1|ENST00000520314.2	+	9557313,9558368,9559174,9560109,9560816,9565091,9567489,9570765,9571460,9573002,9573465,9574846	9557580,9558452,9559348,9560191,9564325,9565303,9569202,9570892,9571573,9573093,9573534,9576275	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	48492783	48492788	48492783	-	High_confidence	4	4	8	0.272956	2.807355	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	47067487	47067518	47067498	-	High_confidence	108	120	468	15.967925	5.819097	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.920940
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	10854170	10854314	10854170	-	RAMPAGE_only	6	6	51	1.740094	4.534036	chr11	10852862	10854628	DNA|hAT-Charlie|Charlie14a	-	chr11	10852863	10858036	ZBED5|ENST00000413761.6	-	10852863,10856143,10857861	10855086,10856257,10858036	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	35773712	35773934	35773772	-	RAMPAGE_only	30	30	110	3.753145	5.884280	chr13	35773606	35773823	DNA|DNA|UCON8	-	chr13	35771338	35855642	DCLK1|ENST00000379893.5	-	35771338,35793365,35805698,35808223,35809017,35810834,35822728,35827634,35828249,35836032,35839091,35854498,35855509	35774699,35793479,35805779,35808320,35809095,35810968,35822875,35827754,35828307,35836141,35839176,35854593,35855642	0.963636
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	29077476	29077524	29077523	+	High_confidence	5	5	21	0.716509	4.297079	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077474	29091576	MAP3K7CL|ENST00000419845.5	+	29077474,29080551,29085812,29091500	29077713,29080708,29085917,29091576	0.666667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	128289038	128289083	128289062	-	RAMPAGE_only	4	4	19	0.648270	3.392147	chr6	128289038	128289202	DNA|hAT-Charlie|MER5A	+	chr6	127969895	128322173	MSTRG.20976.8	-	127969895,127973021,127973663,127976656,127976922,127981115,127982830,127983241,127985720,127990768,127991293,127992672,127995248,127995461,127996900,127998719,128003196,128005083,128006025,128008045,128009129,128064757,128067518,128078812,128082436,128083714,128089689,128184431,128218921,128240034,128242520,128250394,128322038	127970280,127973157,127973827,127976782,127977054,127981289,127982980,127983377,127985875,127990885,127991391,127992709,127995266,127995538,127996988,128001207,128003232,128005244,128006055,128008087,128009268,128064794,128067792,128078918,128082638,128083824,128089992,128184725,128219096,128240150,128242602,128304828,128322173	0.947368
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	91907424	91907425	91907424	-	High_confidence	7	8	10	0.341195	2.947703	chr8	91907266	91907430	SINE|MIR|MIRc	-	chr8	91564979	91907453	AC103409.1|ENST00000518416.1	-	91564979,91773069,91861474,91907273	91565141,91773199,91861579,91907453	0.600000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	35902456	35902471	35902456	+	High_confidence	3	3	7	0.238836	2.807355	chr19	35901853	35902464	LINE|L2|L2b	+	chr19	35902479	35904271	HCST|NM_014266.3	+	35902479,35903350,35903771,35904119	35902636,35903416,35903903,35904271	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	102431237	102431260	102431241	-	High_confidence	8	8	36	1.228302	4.278352	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	74198875	74198887	74198886	-	RAMPAGE_only	4	4	8	0.272956	2.750000	chrX	74198660	74199941	DNA|TcMar-Mariner|HSMAR2	+	chrX	74196350	74293574	FTX|ENST00000603037.2	-	74196350,74247331,74274341,74280393,74280930,74281701,74293351	74203909,74247424,74274410,74280494,74281085,74281848,74293574	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	138347693	138347758	138347725	+	High_confidence	8	8	41	1.398899	4.172574	chr3	138347598	138347891	SINE|Alu|AluSx	-	chr3	138347696	138405533	MRAS|ENST00000289104.8	+	138347696,138372865,138397323,138398468,138400533,138402169	138348325,138373076,138397477,138398568,138400613,138405533	0.975610
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	18793970	18794000	18793999	-	High_confidence	2	2	8	0.272956	3.000000	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18786064	18793993	LINC00652|ENST00000412553.5	-	18786064,18789573,18793664	18788898,18789709,18793993	0.625000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	102450314	102450413	102450359	-	High_confidence	6	6	48	1.637736	5.194236	chr11	102450237	102450387	LTR|ERVL-MaLR|MLT1K	+	chr11	102398855	102451231	TMEM123|ENST00000528969.5	-	102398855,102401538,102401915,102448811,102451201	102398891,102401692,102402206,102448868,102451231	0.750000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	26505874	26505968	26505967	-	RAMPAGE_only	9	10	32	1.091824	3.824533	chr8	26505710	26505993	SINE|Alu|AluSx1	+	chr8	26504679	26513967	PNMA2|NM_007257.5	-	26504679,26509547,26513815	26509243,26509677,26513967	0.968750
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	97268481	97268499	97268498	+	RAMPAGE_only	4	4	11	0.375314	2.846439	chr2	97268326	97268819	LINE|L1|L1PA12	+	chr2	97263034	97278969	MSTRG.13801.10	+	97263034	97278969	0.909091
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	40457002	40457025	40457003	+	RAMPAGE_only	2	3	8	0.272956	2.807355	chr1	40456917	40457007	DNA|TcMar-Tigger|Tigger19b	-	chr1	40450664	40463718	ZFP69B|NM_023070.2	+	40450664,40454202,40456944,40457343,40462420	40451088,40454288,40457071,40457439,40463718	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	16712879	16712979	16712889	-	High_confidence	34	37	227	7.745126	6.414967	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.925110
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	128492050	128492304	128492303	-	High_confidence	15	15	239	8.154560	4.455179	chr6	128492117	128492389	LINE|L2|L2c	+	chr6	128219069	128491857	PTPRK|ENST00000495748.5	-	128219069,128240034,128242520,128322038,128397565,128491731	128219096,128240150,128242602,128322310,128397688,128491857	0.861925
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	5419862	5419882	5419881	+	High_confidence	3	3	13	0.443553	3.584963	chr17	5419928	5419992	LINE|L2|L2	+	chr17	5419887	5432608	RPAIN|ENST00000327154.10	+	5419887,5421295,5422768,5425970,5432541	5420291,5421466,5422829,5426082,5432608	0.692308
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	32446968	32446988	32446977	+	High_confidence	32	35	98	3.343711	5.692128	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.938776
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	76619192	76619197	76619196	+	RAMPAGE_only	5	6	14	0.477673	2.931209	chr3	76619058	76619360	SINE|Alu|AluY	+	chr3	76272980	76677924	MSTRG.16917.7	+	76272980,76343595,76538321,76580389	76343470,76354385,76538471,76677924	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	87039963	87039997	87039963	-	RAMPAGE_only	2	2	9	0.307075	2.500000	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	27121399	27121423	27121399	-	RAMPAGE_only	6	7	14	0.477673	3.521641	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	41285354	41285355	41285354	+	RAMPAGE_only	19	19	23	0.784748	3.969002	chr15	41285320	41285686	LTR|ERV1|LTR7	-	chr15	41284009	41306534	MSTRG.7790.7	+	41284009,41285224,41298040	41284110,41286100,41306534	0.869565
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	110936582	110936585	110936584	+	High_confidence	129	175	209	7.130975	5.678206	chr12	110936431	110936780	LTR|ERVL-MaLR|THE1D	+	chr12	110936601	110937451	LINC01405|ENST00000331096.2	+	110936601,110937184	110936698,110937451	0.736842
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	104112083	104112084	104112083	+	High_confidence	5	7	8	0.272956	2.521641	chrX	104111941	104112155	SINE|MIR|MIRb	+	chrX	104112510	104115604	ZCCHC18|ENST00000537356.3	+	104112510,104113433	104113246,104115604	0.750000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	138170346	138170410	138170346	-	RAMPAGE_only	7	11	27	0.921226	4.106377	chr5	138170278	138170360	DNA|hAT-Ac|OldhAT1	+	chr5	138156881	138177667	BRD8|ENST00000441656.5	-	138156881,138160068,138160890,138161795,138162053,138163129,138164086,138164319,138164713,138165827,138167933,138168469,138169221,138170344,138170831,138171037,138171360,138172064,138177570	138157267,138160173,138161068,138161864,138162146,138163344,138164133,138164413,138165166,138166108,138168078,138168688,138169349,138170409,138170912,138171160,138171410,138172134,138177667	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	65642891	65642917	65642891	+	High_confidence	1	1	7	0.238836	2.807355	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31959158	31959179	31959178	+	High_confidence	8	8	27	0.921226	3.782122	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31981060	KIAA1551|ENST00000540924.5	+	31959407,31960776,31980877	31959491,31960871,31981060	0.666667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	68975836	68975855	68975854	-	High_confidence	7	9	15	0.511792	3.640224	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.800000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	137309809	137309814	137309809	-	RAMPAGE_only	3	3	8	0.272956	2.521641	chr7	137309097	137310388	DNA|TcMar-Tigger|Tigger1	-	chr7	137227363	137343774	PTN|ENST00000393083.2	-	137227363,137236143,137251229,137253463,137254858,137343438	137228075,137236242,137251391,137253637,137254974,137343774	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	118835947	118835954	118835947	-	High_confidence	2	2	7	0.238836	2.521641	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	195688752	195688783	195688752	+	High_confidence	4	5	16	0.545912	3.640224	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688755	195708806	MUC20-OT1|ENST00000628547.2	+	195688755,195689338,195696360,195699029,195708133,195708746	195688797,195689438,195696589,195699178,195708435,195708806	0.750000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	7946867	7946898	7946878	+	High_confidence	56	58	152	5.186164	5.773945	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.815789
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	39382116	39382128	39382127	+	RAMPAGE_only	4	4	8	0.272956	2.521641	chr1	39382176	39382271	SINE|MIR|MIRb	+	chr1	39331137	39486987	MACF1|ENST00000289893.8	+	39331137,39337181,39340501,39340803,39346976,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39378460,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39427960,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39465094,39468614,39479797,39484600,39485537	39336653,39337331,39340717,39340953,39347210,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39378523,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39428287,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39465112,39468732,39480009,39484730,39486987	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	8856678	8856788	8856678	-	RAMPAGE_only	5	5	50	1.705975	4.589662	chr2	8856546	8856854	SINE|Alu|AluSz	-	chr2	8852689	9003750	MBOAT2|NM_138799.3	-	8852689,8860612,8862589,8864169,8868445,8873107,8877029,8882510,8888017,8908620,8943186,8958496,9003539	8858904,8860764,8862722,8864234,8868549,8873300,8877213,8882565,8888073,8908716,8943264,8958642,9003750	0.960000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	99410039	99410057	99410056	+	RAMPAGE_only	3	3	10	0.341195	2.921928	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	50754731	50754780	50754779	-	RAMPAGE_only	3	4	17	0.580031	3.577820	chr14	50754738	50754803	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.882353
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	66729245	66729344	66729279	-	High_confidence	37	39	363	12.385378	6.184987	chr11	66729233	66729349	SINE|MIR|MIRb	-	chr11	66715353	66729226	SPTBN2|ENST00000527010.1	-	66715353,66715829,66721083,66728740	66715395,66715981,66721262,66729226	0.986226
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrY	4036475	4036502	4036475	+	High_confidence	3	3	10	0.341195	2.721928	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	17282821	17282831	17282821	+	RAMPAGE_only	4	4	14	0.477673	3.546594	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17331523	MSTRG.3723.15	+	17277022,17282788,17295323,17296103,17301743,17309571,17310824,17311192,17311871,17312027,17315385,17330126,17330901,17331411	17277095,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17331523	0.928571
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	46087042	46087066	46087042	-	High_confidence	21	22	47	1.603616	5.011828	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.723404
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	24368595	24368608	24368595	-	RAMPAGE_only	4	4	11	0.375314	2.921928	chr12	24368549	24368674	LINE|L2|L2b	+	chr12	23845998	24357430	SOX5|ENST00000536729.2	-	23845998,23895897,24213342,24277215,24357337	23846193,23896024,24213417,24277312,24357430	0.636364
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	41978621	41978630	41978629	-	RAMPAGE_only	6	6	12	0.409434	3.277613	chr19	41978480	41978588	LINE|L2|L2b	-	chr19	41966581	41993467	ATP1A3|NM_001256213.1	-	41966581,41967248,41967661,41968784,41969434,41970184,41970387,41975628,41976415,41977935,41978150,41978605,41981501,41981721,41981907,41984917,41985305,41985863,41986115,41987935,41988317,41988475,41993392	41966965,41967340,41967763,41968915,41969580,41970308,41970542,41975797,41976566,41978072,41978326,41978798,41981636,41981831,41982106,41985186,41985423,41985998,41986229,41988139,41988377,41988562,41993467	0.916667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	23178110	23178161	23178160	-	High_confidence	3	3	13	0.443553	3.084963	chr1	23178154	23178237	SINE|MIR|MIRb	-	chr1	23084029	23177808	LUZP1|ENST00000302291.8	-	23084029,23091189,23109021,23168765,23177490	23089053,23094380,23109127,23169024,23177808	0.923077
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	21845520	21845543	21845520	+	RAMPAGE_only	2	2	7	0.238836	2.521641	chr6	21845434	21845600	DNA?|DNA?|Eulor6D	-	chr6	21898719	22214505	CASC15|ENST00000444265.6	+	21898719,21909469,21978944,22020338,22056545,22063019,22110746,22191566,22194044,22205184,22214306	21898784,21909603,21979062,22020542,22056690,22063240,22110920,22191656,22194116,22205259,22214505	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	26508383	26508676	26508500	-	RAMPAGE_only	14	20	242	8.256918	5.265956	chr8	26507740	26508856	LTR|Gypsy|MamGyp-int	-	chr8	26504679	26513967	PNMA2|NM_007257.5	-	26504679,26509547,26513815	26509243,26509677,26513967	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	77129077	77129078	77129077	+	High_confidence	1078	1296	1315	44.867140	5.579645	chr1	77128993	77129084	DNA|hAT-Charlie|MER58B	+	chr1	77129113	77129668	AC113935.1|ENST00000471722.1	+	77129113	77129668	0.877567
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	28985648	28985681	28985669	+	High_confidence	3	3	12	0.409434	3.095795	chr6	28985713	28985796	SINE|Alu|AluJo	+	chr6	28986202	28987484	HCG15|ENST00000438190.1	+	28986202,28986312,28986676	28986232,28986506,28987484	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	12419867	12419892	12419867	+	High_confidence	2	2	11	0.375314	3.321928	chr18	12419657	12419938	SINE|Alu|AluYc	+	chr18	12419932	12432238	PRELID3A|ENST00000592149.5	+	12419932,12421539,12427040,12427220,12429349,12431149	12420493,12421629,12427111,12427323,12429436,12432238	0.818182
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	26675230	26675327	26675230	+	RAMPAGE_only	8	12	66	2.251887	5.337024	chr22	26675006	26675241	LINE|L2|L2a	-	chr22	26672855	26676475	MSTRG.15922.34	+	26672855,26673687	26673666,26676475	0.939394
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31119432	31119471	31119470	-	High_confidence	9	9	38	1.296541	4.249941	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.842105
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	123630168	123630191	123630190	-	RAMPAGE_only	3	3	6	0.204717	2.584963	chr12	123629883	123630152	SINE|MIR|MIR	-	chr12	123621737	123632447	EIF2B1|ENST00000539951.5	-	123621737,123622635,123626424,123627043,123630168,123630396,123632344	123621920,123622761,123626493,123627156,123630285,123630533,123632447	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	100126722	100126734	100126733	+	High_confidence	3	4	9	0.307075	2.750000	chr7	100126512	100126811	SINE|Alu|AluJr	+	chr7	100126784	100127736	MBLAC1|ENST00000421390.1	+	100126784,100127367	100127133,100127736	0.555556
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	147937510	147937596	147937595	+	RAMPAGE_only	7	9	55	1.876572	5.076725	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	MSTRG.25164.19	+	147940580,147943130,147944904,147945533,147948682	147940662,147943326,147945051,147945616,147950315	0.963636
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	12800944	12800974	12800944	-	High_confidence	7	7	32	1.091824	3.269577	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.937500
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	67886517	67886518	67886517	+	High_confidence	9	9	14	0.477673	3.546594	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	243574863	243574864	243574863	-	RAMPAGE_only	7	7	8	0.272956	2.807355	chr1	243574791	243575029	LINE|RTE-X|L4_B_Mam	+	chr1	243488232	243843236	AKT3|ENST00000336199.9	-	243488232,243499736,243512323,243545509,243552728,243563719,243572925,243613670,243615095,243637610,243645892,243664771,243695590,243843124	243488450,243499786,243512426,243545597,243552943,243563848,243573048,243613739,243615161,243637742,243646037,243664883,243695716,243843236	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	45630132	45630133	45630132	+	RAMPAGE_only	7	7	7	0.238836	2.521641	chr17	45629831	45630451	LINE|CR1|L3	-	chr17	45620614	45637963	MGC57346|NR_027295.2	+	45620614,45621907,45629903,45636282	45621152,45622041,45630158,45637963	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	8697164	8697221	8697193	+	High_confidence	12	13	81	2.763679	5.511006	chr12	8697043	8697239	SINE|MIR|MIRc	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.876543
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	227142956	227142989	227142956	-	RAMPAGE_only	4	4	22	0.750629	3.975418	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.545455
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	167696449	167696471	167696449	-	High_confidence	6	6	13	0.443553	3.251629	chr6	167696404	167696912	LINE|L1|L1ME3G	+	chr6	167680691	167696290	LINC02487|ENST00000644320.1	-	167680691,167682332,167683107,167695334,167695915,167696203	167681937,167682447,167684245,167695377,167696087,167696290	0.538462
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	10729302	10729336	10729335	-	RAMPAGE_only	2	2	7	0.238836	2.521641	chr11	10729274	10729483	LTR|ERVL|LTR67B	-	chr11	10573090	10693988	MRVI1|NM_001206881.1	-	10573090,10580454,10581866,10591547,10593491,10594145,10600917,10603119,10604404,10606741,10609727,10623777,10625965,10627715,10628750,10629537,10631990,10633967,10693535	10576575,10580589,10581986,10591612,10593599,10594195,10601059,10603251,10604545,10606772,10609851,10623856,10626583,10627760,10628828,10629711,10632061,10634071,10693988	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	68179546	68179565	68179564	-	High_confidence	5	5	11	0.375314	2.921928	chr11	68179564	68179619	DNA|TcMar-Tigger|Tigger19a	+	chr11	68171118	68180165	KMT5B|ENST00000323599.10	-	68171118,68171231,68171542,68173803,68174087,68175017,68180131	68171151,68171251,68171709,68173913,68174210,68175183,68180165	0.545455
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	64226142	64226203	64226158	-	High_confidence	56	62	396	13.511321	6.887324	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.941919
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	84546219	84546242	84546241	-	RAMPAGE_only	3	3	8	0.272956	3.000000	chr15	84545904	84546191	SINE|Alu|AluSx1	-	chr15	84527631	84542229	UBE2Q2P1|ENST00000559958.1	-	84527631,84538531,84539703,84542144	84527667,84538616,84539788,84542229	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	59619888	59619923	59619894	+	High_confidence	1692	1988	6278	214.202207	5.846111	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.958426
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	88611733	88611807	88611735	-	High_confidence	9	13	49	1.671855	4.996115	chr5	88611584	88611790	LINE|L1|L1MDa	+	chr5	88540510	88611776	LINC00461|ENST00000506664.5	-	88540510,88542034,88611663	88541123,88542070,88611776	0.510204
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	663425	663445	663429	+	High_confidence	3	3	10	0.341195	2.947703	chr19	663474	663667	LINE|L2|L2a	+	chr19	663481	669500	AC004156.1|ENST00000591866.2	+	663481,667211	664511,669500	0.800000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	34860565	34860576	34860575	-	RAMPAGE_only	3	4	7	0.238836	2.584963	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34816153	34832869	LOC400685|NR_033982.1	-	34816153,34818586,34829163,34830405,34832329,34832724	34817490,34818766,34829253,34830526,34832536,34832869	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	45242277	45242300	45242299	-	RAMPAGE_only	5	5	13	0.443553	3.418296	chr11	45242286	45242587	SINE|Alu|AluSq	+	chr11	45240300	45286319	SYT13|ENST00000020926.7	-	45240300,45246382,45252420,45254269,45255665,45286024	45244356,45246512,45252722,45254404,45255891,45286319	0.923077
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	46490022	46490042	46490036	-	High_confidence	3	3	15	0.511792	3.373557	chr19	46489891	46489994	LINE|L2|L2a	-	chr19	46481084	46490120	PPP5D1|ENST00000595691.1	-	46481084,46489865	46481440,46490120	0.933333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	4248940	4248991	4248990	-	High_confidence	7	8	26	0.887107	3.639080	chr18	4248689	4249312	LINE|L2|L2a	+	chr18	4005115	4248719	DLGAP1|ENST00000577430.1	-	4005115,4151179,4248568	4005201,4151287,4248719	0.653846
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	44914321	44914322	44914321	+	High_confidence	16	16	19	0.648270	3.530493	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.736842
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	112483397	112483417	112483397	+	RAMPAGE_only	3	3	11	0.375314	3.459432	chr2	112483215	112483511	LTR|ERVL-MaLR|MLT1J	-	chr2	112482198	112483930	TTL|ENST00000485537.1	+	112482198,112483139	112482501,112483930	0.818182
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	103181328	103181329	103181328	-	High_confidence	61	61	65	2.217767	5.492133	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103098391	103181320	MSTRG.3269.9	-	103098391,103099925,103101044,103101234,103105705,103106588,103139405,103174857,103181184	103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982,103181320	0.507692
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	80147918	80147930	80147929	+	High_confidence	13	13	49	1.671855	5.010431	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.530612
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	203127058	203127095	203127058	+	High_confidence	14	14	47	1.603616	5.027889	chr1	203126924	203127118	SINE|MIR|MIR3	+	chr1	203127064	203167405	ADORA1|ENST00000367236.8	+	203127064,203128784,203165260	203127928,203129182,203167405	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	104763719	104763850	104763755	+	High_confidence	24	27	128	4.367296	6.040667	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NM_018376.3	+	104763740,104766324,104768862,104770848,104772821,104772996	104764300,104766535,104769021,104770998,104772908,104777764	0.976562
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	62012771	62012796	62012795	+	RAMPAGE_only	3	3	10	0.341195	3.169925	chr2	62012779	62012863	DNA|hAT-Charlie|MER5B	+	chr2	61905646	62136247	COMMD1|ENST00000311832.5	+	61905646,62000700,62135830	61905858,62000982,62136247	0.600000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	207598612	207598613	207598612	+	RAMPAGE_only	9	9	11	0.375314	3.121928	chr2	207598565	207598858	SINE|Alu|AluSq2	+	chr2	207529911	207603431	CREB1|ENST00000353267.7	+	207529911,207555627,207560225,207567462,207570178,207575271,207577504,207596913	207530134,207555749,207560372,207567563,207570321,207575454,207577655,207603431	0.909091
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	175787692	175787860	175787805	-	High_confidence	8	9	67	2.286006	5.353038	chr4	175787777	175787911	LINE|L2|L2a	+	chr4	175632936	175787676	GPM6A|NM_001261448.1	-	175632936,175640128,175640752,175651833,175673679,175701574,175787335	175635057,175640194,175640829,175651987,175673836,175701767,175787676	0.835821
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	37157438	37157467	37157449	-	High_confidence	3	3	11	0.375314	3.121928	chr2	37157310	37157469	SINE|MIR|MIRb	-	chr2	37141634	37157065	EIF2AK2|ENST00000390013.3	-	37141634,37146852,37147687,37148856,37156907	37141701,37146973,37147822,37148939,37157065	0.636364
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	105329670	105329674	105329673	-	High_confidence	4	4	9	0.307075	3.000000	chr2	105329666	105329774	LTR|ERV1|LTR2752	-	chr2	105264389	105329714	TGFBRAP1|NM_001142621.2	-	105264389,105269271,105272854,105273543,105275559,105277613,105280381,105284315,105296355,105298510,105307613,105329624	105267559,105269705,105273014,105273690,105275703,105277671,105280723,105284398,105296510,105298705,105308315,105329714	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	75995229	75995236	75995233	+	RAMPAGE_only	4	4	13	0.443553	3.251629	chr3	75994676	75996176	LTR|ERVL-MaLR|THE1D-int	+	chr3	75906801	76149036	MSTRG.16917.3	+	75906801,75937480,76073406	75906960,76073251,76149036	0.846154
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	2672750	2672751	2672750	+	High_confidence	5	5	8	0.272956	2.750000	chr17	2672787	2673082	SINE|Alu|AluSq2	+	chr17	2673664	2682348	PAFAH1B1|ENST00000571495.1	+	2673664,2676504,2680163,2681728	2674288,2676606,2680320,2682348	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	127120928	127120931	127120928	-	RAMPAGE_only	6	7	10	0.341195	2.521928	chr4	127120312	127121110	LTR|ERVL|LTR82B	-	chr4	127096890	127106771	AC093772.1|ENST00000513519.1	-	127096890,127106634	127097259,127106771	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	110606602	110606603	110606602	-	RAMPAGE_only	5	7	8	0.272956	2.521641	chr11	110606493	110606587	LINE|RTE-BovB|MamRTE1	-	chr11	110577034	110712050	ARHGAP20|NM_001258415.1	-	110577034,110582320,110583547,110586215,110590647,110591976,110606560,110608983,110611308,110614560,110615552,110624161,110630627,110690546,110711657	110581225,110582435,110583737,110586325,110590809,110592155,110606749,110609050,110611386,110614645,110615594,110624311,110630792,110690629,110712050	0.750000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	137254877	137254969	137254968	-	RAMPAGE_only	83	101	505	17.230346	6.080708	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.980198
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	71299969	71300460	71300459	+	RAMPAGE_only	55	68	661	22.552988	6.035391	chrX	71300434	71300519	SINE|Alu|AluSx	-	chrX	71291994	71301168	NONO|ENST00000490044.5	+	71291994,71294218,71296564,71296850,71297376,71297835,71298468,71298706,71299941	71293041,71294528,71296660,71297047,71297461,71297938,71298508,71298816,71301168	0.998487
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	44610854	44610921	44610854	-	RAMPAGE_only	57	59	202	6.892139	6.315452	chr12	44610329	44610807	LINE|L2|L2	-	chr12	44522776	44532621	NELL2|ENST00000550139.1	-	44522776,44532580	44523484,44532621	0.524752
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	57568118	57568133	57568132	-	High_confidence	4	4	14	0.477673	3.664498	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	92536651	92536683	92536674	-	High_confidence	5	5	13	0.443553	3.584963	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.846154
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	16728127	16728128	16728127	+	High_confidence	11	12	12	0.409434	2.663533	chr2	16727942	16728298	LTR|ERVL-MaLR|THE1D	+	chr2	16728123	16767409	AC008164.1|ENST00000423925.5	+	16728123,16765011,16767015	16728179,16765125,16767409	0.916667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	43510446	43510447	43510446	-	High_confidence	8	8	10	0.341195	3.321928	chr15	43510182	43510408	LINE|CR1|L3b	-	chr15	43407213	43510509	TP53BP1|NM_005657.2	-	43407213,43407942,43408896,43409646,43413118,43415593,43416224,43420304,43421024,43421854,43428015,43432193,43438323,43441525,43446386,43447365,43455891,43469857,43474672,43475564,43477592,43479396,43479858,43480894,43491668,43492001,43492283,43510369	43407570,43408088,43409096,43409741,43413334,43415809,43416416,43420735,43421174,43422126,43428168,43432677,43438416,43441583,43446590,43447485,43457218,43470066,43474767,43475694,43477759,43479526,43480017,43481022,43491753,43492095,43492468,43510509	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	122047670	122047688	122047670	+	RAMPAGE_only	2	3	8	0.272956	2.807355	chr7	122047647	122047953	SINE|Alu|AluJb	-	chr7	121873360	122061361	PTPRZ1|ENST00000449182.1	+	121873360,121928155,121967950,121972540,121976172,121976784,121983664,121983966,121996381,121997879,122004613,122010333,122019123,122028551,122031473,122034281,122036599,122038754,122039453,122040815,122042607,122044421,122051427,122051865,122053909,122054940,122058799,122059752,122061079	121873557,121928221,121968130,121972692,121976268,121976851,121983822,121984117,121996566,121998006,122004660,122011309,122019268,122028643,122031559,122034378,122036682,122038889,122039588,122040979,122042743,122044568,122051521,122051939,122054038,122055087,122058942,122059888,122061361	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	76143686	76143722	76143686	+	RAMPAGE_only	6	7	28	0.955346	3.213455	chr3	76143666	76144158	LTR|ERVL|MLT2B4	-	chr3	75906801	76149036	MSTRG.16917.3	+	75906801,75937480,76073406	75906960,76073251,76149036	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	4345112	4345125	4345112	-	RAMPAGE_only	5	5	9	0.307075	2.641604	chr18	4344829	4345084	DNA|TcMar-Tigger|Tigger20a	-	chr18	3823317	4369762	MSTRG.11308.1	-	3823317,4305485	3823885,4369762	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	153967486	153967512	153967486	+	High_confidence	6	6	13	0.443553	2.931209	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.769231
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	102706282	102706283	102706282	-	RAMPAGE_only	6	6	6	0.204717	2.584963	chr10	102706170	102706459	SINE|Alu|AluSc8	+	chr10	102673730	102714407	ARL3|ENST00000260746.5	-	102673730,102685815,102689892,102699372,102705345,102714272	102676941,102686001,102689943,102699489,102705489,102714407	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	127816856	127816889	127816872	-	RAMPAGE_only	3	3	13	0.443553	3.251629	chr6	127816487	127817252	LINE|L2|L2a	+	chr6	127708193	127855188	THEMIS|NM_001318531.1	-	127708193,127719687,127812882,127829475,127841907,127851895,127855029	127710016,127719823,127813931,127829934,127842087,127852020,127855188	0.769231
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	4143196	4143215	4143199	+	High_confidence	118	124	343	11.702988	5.753967	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.973761
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	5680226	5680261	5680240	-	High_confidence	10	10	69	2.354245	5.390205	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.956522
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	243637867	243637887	243637882	-	RAMPAGE_only	2	2	9	0.307075	2.725481	chr1	243637863	243638052	LINE|L1|HAL1ME	+	chr1	243488232	243843236	AKT3|ENST00000336199.9	-	243488232,243499736,243512323,243545509,243552728,243563719,243572925,243613670,243615095,243637610,243645892,243664771,243695590,243843124	243488450,243499786,243512426,243545597,243552943,243563848,243573048,243613739,243615161,243637742,243646037,243664883,243695716,243843236	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	40363500	40363501	40363500	-	RAMPAGE_only	6	6	7	0.238836	2.584963	chr6	40362782	40364444	LINE|L1|L1MEc	+	chr6	40358743	40369474	AL139275.1|ENST00000447315.1	-	40358743,40369388	40359481,40369474	0.714286
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	27331744	27331790	27331786	+	High_confidence	27	27	104	3.548428	5.297174	chr22	27331341	27331854	LTR|ERVL|LTR33	-	chr22	27331786	27379265	AL020994.2|ENST00000413244.1	+	27331786,27335157,27336096,27379185	27331938,27335330,27336262,27379265	0.826923
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	83208516	83208540	83208539	-	High_confidence	3	3	10	0.341195	3.169925	chr15	83208475	83208527	SINE|MIR|MIRb	-	chr15	83127752	83208018	HDGFL3|ENST00000299633.6	-	83127752,83151214,83157414,83157902,83163998,83207330	83139275,83151361,83157573,83158041,83164075,83208018	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	115296223	115296238	115296223	-	High_confidence	3	3	11	0.375314	3.121928	chr5	115296013	115296236	SINE|MIR|MIRb	-	chr5	115267638	115296268	CCDC112|ENST00000395557.4	-	115267638,115268881,115269702,115271212,115275215,115275993,115276964,115279646,115284786,115295909	115267918,115269000,115269798,115271626,115275606,115276069,115277054,115279768,115284908,115296268	0.545455
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	144106344	144106362	144106344	+	High_confidence	2	2	6	0.204717	2.584963	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	29969966	29970004	29969966	-	High_confidence	3	4	15	0.511792	3.640224	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	0.866667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	27331602	27331683	27331602	+	High_confidence	59	59	514	17.537422	6.041515	chr22	27331341	27331854	LTR|ERVL|LTR33	-	chr22	27331786	27379265	AL020994.2|ENST00000413244.1	+	27331786,27335157,27336096,27379185	27331938,27335330,27336262,27379265	0.889105
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	46467388	46467606	46467605	-	RAMPAGE_only	13	15	129	4.401415	5.161465	chr19	46467419	46467702	SINE|Alu|AluSg	-	chr19	46466490	46471407	PNMA8A|ENST00000438932.2	-	46466490,46469937,46471336	46468577,46471114,46471407	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	98010690	98010725	98010690	+	RAMPAGE_only	3	3	16	0.545912	3.773557	chr9	98010508	98010692	LINE|L2|L2b	-	chr9	97983360	98015943	ANP32B|ENST00000339399.4	+	97983360,97994630,97998555,98004963,98011270,98012420,98015363	97983609,97994780,97998678,98005153,98011389,98012472,98015943	0.937500
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	161620914	161620938	161620914	+	RAMPAGE_only	2	2	9	0.307075	2.947703	chr2	161620798	161621204	DNA|TcMar-Tigger|Tigger2a	+	chr2	161624334	161985275	SLC4A10|ENST00000375514.9	+	161624334,161708693,161770972,161804448,161839788,161854969,161862873,161872292,161879130,161882356,161894678,161900910,161904003,161904775,161905641,161942791,161947565,161949147,161950686,161956988,161958486,161964134,161965050,161974248,161976759,161977721,161983178	161624566,161708829,161771054,161804595,161839927,161855130,161863062,161872384,161879288,161882444,161894825,161901011,161904178,161904909,161905887,161942897,161947727,161949261,161950848,161957240,161958555,161964308,161965173,161974316,161976876,161977760,161985275	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	2728424	2728462	2728451	-	High_confidence	12	12	61	2.081289	5.289091	chr8	2728201	2728557	LTR|ERV1|LTR12C	+	chr8	2530091	2728451	LOC101927815|NR_125425.1	-	2530091,2595564,2596624,2604780,2674729,2728329	2530166,2595703,2596704,2604930,2674845,2728451	0.590164
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	25901750	25901751	25901750	-	RAMPAGE_only	5	5	7	0.238836	2.584963	chr1	25901727	25902016	SINE|Alu|AluSx1	+	chr1	25900740	25905128	STMN1|ENST00000374291.5	-	25900740,25901490,25903640,25904663,25905048	25901087,25901682,25903813,25904738,25905128	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	3292638	3292678	3292642	-	RAMPAGE_only	4	4	23	0.784748	4.004886	chr2	3292493	3292680	SINE|MIR|MIRb	-	chr2	3188924	3320544	EIPR1|ENST00000478754.5	-	3188924,3192413,3193998,3196880,3214148,3257298,3261714,3261916,3318856,3319220,3319610	3189508,3192581,3194166,3197017,3214248,3257455,3261827,3262137,3318958,3319468,3320544	0.608696
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	149509878	149509948	149509878	-	RAMPAGE_only	9	9	65	2.217767	4.837849	chr5	149509722	149509839	SINE|Alu|AluJb	-	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.953846
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	52644703	52644751	52644703	-	RAMPAGE_only	2	2	15	0.511792	3.664498	chr3	52644388	52644682	SINE|Alu|AluSc	-	chr3	52586429	52678567	PBRM1|ENST00000446103.5	-	52586429,52587352,52589069,52603520,52609312,52615350,52617261,52624896,52627272,52628893,52634601,52641953,52643247,52644703,52648343,52651741,52658198,52662132,52668497,52678499	52586688,52587510,52589252,52603732,52609955,52615456,52617538,52624941,52627370,52629035,52634815,52642045,52643343,52644789,52648442,52651810,52658315,52662276,52668645,52678567	0.933333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	34399811	34399831	34399811	-	RAMPAGE_only	4	5	12	0.409434	2.845351	chr9	34399677	34399841	SINE|MIR|MIR3	-	chr9	34398183	34458552	FAM219A|ENST00000379089.5	-	34398183,34401665,34402386,34402704,34405864,34458203	34401119,34401720,34402467,34402807,34405964,34458552	0.916667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	49086488	49086547	49086546	+	High_confidence	17	17	54	1.842453	5.109000	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.555556
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	172868017	172868036	172868017	+	RAMPAGE_only	3	3	9	0.307075	2.750000	chr5	172867814	172868037	SINE|MIR|MIRb	-	chr5	172834274	172952685	ERGIC1|ENST00000393784.7	+	172834274,172888698,172897001,172909666,172914713,172924004,172926508,172932435,172935187,172950708	172834433,172888760,172897074,172909761,172914838,172924109,172926569,172932536,172935310,172952685	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	143039246	143039267	143039266	+	High_confidence	18	21	66	2.251887	5.128079	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.636364
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	212411771	212411910	212411840	-	RAMPAGE_only	14	14	85	2.900157	4.110678	chr2	212411486	212411822	LTR|ERV1|LTR78	-	chr2	212267922	212538529	MSTRG.14627.11	-	212267922,212391649,212426361	212391609,212426275,212538529	0.988235
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	6208681	6208682	6208681	-	High_confidence	76	76	76	2.593082	3.458408	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.973684
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	71423278	71423364	71423280	+	RAMPAGE_only	9	12	44	1.501258	4.967308	chr2	71423244	71423287	DNA|hAT-Ac|OldhAT1	+	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.931818
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	100102067	100102079	100102067	+	High_confidence	4	6	14	0.477673	2.873141	chr7	100102098	100102390	SINE|Alu|AluSx1	+	chr7	100102060	100107148	AP4M1|ENST00000422582.5	+	100102060,100102674,100102863,100103408,100103611,100104091,100104873,100105044,100105239,100105444,100105958,100106240,100106402,100106657	100102393,100102781,100102960,100103519,100103692,100104154,100104940,100105098,100105346,100105539,100106003,100106291,100106514,100107148	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	218284561	218284562	218284561	+	High_confidence	4	4	7	0.238836	2.584963	chr1	218284453	218284580	LINE|L2|L2b	-	chr1	218285286	218337983	RRP15|NM_016052.3	+	218285286,218302293,218305027,218307430,218330947	218285455,218302559,218305125,218307632,218337983	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	9993951	9993967	9993966	-	High_confidence	4	4	8	0.272956	2.521641	chr11	9993915	9994007	DNA|hAT-Ac|OldhAT1	+	chr11	9853706	9993104	SBF2|ENST00000420722.2	-	9853706,9856457,9858225,9895942,9961956,9963772,9968340,9989496,9992989	9853712,9856720,9858396,9896011,9962106,9963882,9968545,9989595,9993104	0.750000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	94691071	94691096	94691095	+	RAMPAGE_only	25	28	132	4.503774	5.742217	chr5	94691104	94691211	LINE|Penelope|Penelope1_Vert	+	chr5	94678398	94695871	SLF1|ENST00000450932.2	+	94678398,94686572,94688505,94689472,94691563,94692073,94694830	94678955,94686718,94688669,94689606,94691656,94692256,94695871	0.909091
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	123061128	123061328	123061327	-	High_confidence	64	64	590	20.130504	6.364345	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.976271
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	166850112	166850135	166850112	+	RAMPAGE_only	6	8	20	0.682390	3.521928	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	80059787	80059788	80059787	+	High_confidence	5	6	8	0.272956	2.807355	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059713	80138360	ZFAND6|ENST00000558494.5	+	80059713,80120327,80121711,80122699,80131179,80137479	80059809,80120498,80121820,80122800,80131293,80138360	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	107660070	107660091	107660090	-	RAMPAGE_only	8	9	21	0.716509	4.121928	chr7	107660073	107660151	LINE|CR1|X6A_LINE	+	chr7	107656515	107661798	SLC26A4-AS1|NR_028137.1	-	107656515,107661601	107660206,107661798	0.666667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	27331403	27331410	27331409	+	High_confidence	6	6	17	0.580031	3.875000	chr22	27331341	27331854	LTR|ERVL|LTR33	-	chr22	27331786	27379265	AL020994.2|ENST00000413244.1	+	27331786,27335157,27336096,27379185	27331938,27335330,27336262,27379265	0.882353
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	139344537	139344548	139344547	+	High_confidence	18	18	42	1.433019	4.106718	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.976190
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	70032239	70032251	70032250	+	RAMPAGE_only	2	2	7	0.238836	2.584963	chr1	70032292	70032399	SINE|MIR|MIRb	+	chr1	69568449	70144364	MSTRG.992.7	+	69568449,69678380,69760190,69792042,69825747,69834779,69838226,69931506,69980378,69986241,69994560,70011796,70012973,70016464,70018718,70021004,70023125,70036443,70038112,70053025,70076076,70089726,70107751,70121779	69568641,69678478,69760393,69792160,69825826,69834869,69838283,69931570,69980453,69986386,69994633,70011926,70013089,70016534,70018818,70021129,70036232,70036624,70044094,70053145,70076298,70089819,70107826,70144364	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	57274842	57274859	57274858	+	RAMPAGE_only	6	6	13	0.443553	3.251629	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.769231
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	21360437	21360473	21360437	-	RAMPAGE_only	5	5	14	0.477673	3.521641	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351478	21358402	SUPT16H|ENST00000557394.5	-	21351478,21353487,21353702,21354410,21357196,21357926	21352818,21353565,21353832,21354540,21357366,21358402	0.785714
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	74333424	74333449	74333448	-	RAMPAGE_only	4	4	9	0.307075	2.750000	chr11	74333233	74333564	LINE|CR1|L3b	-	chr11	74330311	74398465	PGM2L1|NM_173582.4	-	74330311,74338467,74342460,74342884,74343322,74345468,74346731,74347147,74351382,74368491,74370901,74371710,74374414,74398050	74336754,74338601,74342650,74343014,74343416,74345649,74346829,74347337,74351576,74368575,74370986,74371817,74374582,74398465	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	19955890	19956011	19955944	+	High_confidence	25	29	154	5.254403	5.953042	chr8	19955939	19955979	DNA|TcMar-Tigger|Tigger19b	+	chr8	19956004	19967196	LPL|ENST00000650478.1	+	19956004,19960900,19962114,19965309	19956083,19961083,19962219,19967196	0.870130
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	143026446	143026485	143026456	+	RAMPAGE_only	16	21	72	2.456604	4.929652	chr2	143026366	143026854	LTR|ERV1|LTR1D	-	chr2	142877663	143042172	KYNU|ENST00000409512.5	+	142877663,142881344,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142877736,142881430,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143042172	0.722222
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	39810023	39810118	39810033	-	High_confidence	24	24	142	4.844969	5.809076	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807380	39810058	GLIDR|ENST00000618092.2	-	39807380,39809730	39809633,39810058	0.535211
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	32641904	32641921	32641904	-	High_confidence	8	9	14	0.477673	2.753434	chr21	32641733	32641912	SINE|MIR|MIR3	-	chr21	32631777	32641945	SYNJ1|ENST00000418301.3	-	32631777,32634860,32638907,32639670,32641895	32631801,32634881,32639125,32639779,32641945	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	76094058	76094059	76094058	+	RAMPAGE_only	21	22	24	0.818868	3.442862	chr4	76093875	76094237	LTR|ERVL-MaLR|MLT1A	+	chr4	76082498	76112412	ART3|ENST00000511188.1	+	76082498,76097643,76098954,76100290,76100794,76100989,76103936,76104596,76105521,76107760,76112385	76082535,76097676,76098987,76100320,76100824,76101019,76103969,76104629,76105554,76107793,76112412	0.625000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	25820171	25820216	25820192	+	High_confidence	10	10	53	1.808333	4.716569	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.679245
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	3380915	3380928	3380927	+	High_confidence	4	4	9	0.307075	2.500000	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	66282735	66282751	66282750	+	High_confidence	6	6	16	0.545912	3.640224	chr11	66282790	66282925	SINE|MIR|MIR3	+	chr11	66282593	66283750	CNIH2|ENST00000531936.1	+	66282593,66283034,66283247,66283569	66282780,66283147,66283391,66283750	0.750000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	6590246	6590300	6590246	+	High_confidence	9	9	59	2.013050	5.081834	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.881356
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	36163397	36163427	36163407	+	RAMPAGE_only	4	4	12	0.409434	2.855389	chr11	36163207	36163438	DNA|TcMar-Tigger|MamRep434	-	chr11	36109924	36229211	LDLRAD3|ENST00000534091.1	+	36109924,36227084,36229159	36110094,36227430,36229211	0.666667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	44828849	44828903	44828902	-	RAMPAGE_only	7	7	22	0.750629	4.277613	chr7	44828696	44829092	LTR|ERVL-MaLR|MLT1D	-	chr7	44826790	44848077	H2AFV|ENST00000222690.10	-	44826790,44835528,44840898,44843276,44847968	44830163,44835658,44841012,44843354,44848077	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	57267756	57267782	57267781	+	RAMPAGE_only	8	8	17	0.580031	3.499228	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.882353
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	107580245	107580267	107580264	+	High_confidence	1315	1322	6719	229.248905	7.250460	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.899687
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	3380960	3380961	3380960	+	High_confidence	41	42	43	1.467138	4.850534	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.558140
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	70257706	70257707	70257706	+	High_confidence	19	19	27	0.921226	4.209867	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.925926
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	133396039	133396083	133396082	+	High_confidence	3	3	10	0.341195	2.947703	chr7	133396038	133396214	DNA|hAT-Charlie|MER5A	+	chr7	133396138	133630138	EXOC4|ENST00000486409.6	+	133396138,133475327,133480049,133630044	133396414,133475473,133480138,133630138	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	72896511	72896555	72896554	+	RAMPAGE_only	3	3	12	0.409434	3.584963	chr5	72896587	72896884	SINE|Alu|AluSx1	+	chr5	72871746	72908913	MSTRG.19093.16	+	72871746,72872638,72875614,72877227,72882466,72883063,72887069,72888077,72889785,72891809,72893138,72893376,72893615,72896457,72897055,72900973,72903708,72905302,72908708	72871889,72872720,72875737,72877346,72882527,72883232,72887222,72888303,72889957,72891896,72893246,72893535,72893703,72896556,72897151,72901073,72903783,72905445,72908913	0.583333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	227534916	227534925	227534916	+	RAMPAGE_only	8	8	17	0.580031	3.875000	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.705882
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	11618090	11618091	11618090	+	RAMPAGE_only	11	11	12	0.409434	3.095795	chr19	11618078	11618188	LTR|ERVL|LTR33C	+	chr19	11597482	11619124	ZNF627|ENST00000588174.1	+	11597482,11614526,11614826,11616705	11597630,11614653,11614887,11619124	0.916667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	102419928	102419953	102419937	-	High_confidence	3	3	20	0.682390	4.121928	chr10	102419931	102420131	SINE|MIR|MIRc	+	chr10	102402616	102419934	PSD|NM_001270965.1	-	102402616,102403841,102404582,102404897,102405182,102405345,102407222,102410857,102411057,102411706,102412146,102412380,102413768,102414862,102416016,102416384,102418700,102419873	102403430,102403985,102404727,102405055,102405253,102405536,102407266,102410947,102411116,102411819,102412227,102412575,102414197,102415229,102416119,102417121,102418759,102419934	0.950000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	93017616	93017668	93017660	-	High_confidence	64	84	216	7.369812	6.537135	chr8	93017253	93017736	LTR|ERVL|LTR79	-	chr8	92885319	93017673	TRIQK|ENST00000520686.5	-	92885319,92891988,92916928,92954405,93017608	92886735,92892074,92917010,92954564,93017673	0.810185
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	203429622	203429660	203429659	+	RAMPAGE_only	3	5	13	0.443553	3.392747	chr2	203429476	203429770	SINE|Alu|AluSc	+	chr2	203391043	203432172	MSTRG.14579.22	+	203391043,203394699,203395655,203402575,203416907,203427176,203427495	203391143,203394846,203395780,203402734,203417081,203427269,203432172	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	242147362	242147363	242147362	+	High_confidence	8	8	9	0.307075	2.750000	chr1	242147016	242149664	LINE|L1|L1ME1	-	chr1	242147513	242209129	AL591686.2|ENST00000608241.1	+	242147513,242177728,242178294,242192154,242209091	242147554,242177903,242178365,242192304,242209129	0.555556
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	45862561	45862631	45862566	-	High_confidence	8	8	55	1.876572	4.521647	chr19	45862393	45862941	LINE|L2|L2b	-	chr19	45848829	45863194	SYMPK|ENST00000594293.5	-	45848829,45852311,45852481,45854174,45854390,45861899,45863057	45848876,45852385,45852535,45854240,45854507,45862027,45863194	0.672727
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	107580458	107580507	107580475	+	High_confidence	5	5	25	0.852987	3.918296	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.680000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	18153616	18153668	18153636	+	High_confidence	5	5	17	0.580031	3.750000	chr17	18153414	18153703	SINE|Alu|AluSq2	+	chr17	18153653	18178984	MYO15A|ENST00000646782.1	+	18153653,18154130,18154679,18155109,18156194,18156953,18157155,18158522,18158924,18159274,18159605,18159934,18161316,18162584,18163243,18163741,18166360,18167589,18171637,18172206,18173594,18178768	18153896,18154190,18154755,18155432,18156336,18157065,18157900,18158638,18158997,18159347,18159679,18160017,18161447,18162679,18163321,18163838,18166521,18167723,18171771,18172416,18173921,18178984	0.705882
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	27822474	27822491	27822474	+	RAMPAGE_only	2	2	6	0.204717	2.584963	chr1	27822449	27822506	LTR|ERV1|LTR29	-	chr1	27773182	27824452	STX12|NM_177424.2	+	27773182,27789561,27793532,27801677,27810245,27812162,27817850,27819649,27822230	27773425,27789631,27793632,27801815,27810289,27812268,27817923,27819732,27824452	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	2205750	2205851	2205850	+	High_confidence	44	45	436	14.876101	5.504651	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.974771
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	58755976	58755977	58755976	-	RAMPAGE_only	6	6	6	0.204717	2.584963	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	113625611	113625656	113625611	-	RAMPAGE_only	1	1	10	0.341195	2.947703	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	0.800000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31959114	31959137	31959136	+	High_confidence	3	3	10	0.341195	2.646439	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31981060	KIAA1551|ENST00000540924.5	+	31959407,31960776,31980877	31959491,31960871,31981060	0.700000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	73713091	73713250	73713107	-	RAMPAGE_only	7	7	117	3.991981	5.578771	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	152717584	152717585	152717584	+	RAMPAGE_only	18	18	20	0.682390	3.286629	chr6	152717403	152717757	LTR|ERVL-MaLR|THE1B	+	chr6	152697960	152724501	MYCT1|ENST00000532295.1	+	152697960,152721741,152722762	152698098,152722253,152724501	0.850000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	48907228	48907245	48907228	-	High_confidence	2	3	8	0.272956	2.750000	chr4	48907159	48907231	SINE|MIR|MIRb	-	chr4	48885381	48906937	OCIAD2|ENST00000508069.6	-	48885381,48892771,48894005,48897803,48904483,48906657	48885565,48892889,48894053,48897857,48904611,48906937	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	3197039	3197067	3197066	-	RAMPAGE_only	5	5	15	0.511792	3.506891	chr2	3197045	3197259	LINE|L1|L1MC	+	chr2	3189324	3194391	EIPR1|ENST00000496433.5	-	3189324,3192413,3193998	3189508,3192581,3194391	0.666667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	119110879	119110891	119110879	+	High_confidence	5	5	9	0.307075	2.725481	chr11	119110843	119110902	LINE|CR1|L3b	+	chr11	119111056	119117121	C2CD2L|ENST00000528586.2	+	119111056,119111262,119111520,119112327,119112481,119112699,119113610,119113854,119114079,119116024	119111168,119111374,119111629,119112392,119112609,119112874,119113712,119113988,119114365,119117121	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	72350979	72351000	72350979	-	RAMPAGE_only	2	2	8	0.272956	2.500000	chr4	72350303	72351253	LINE|L1|L1MEc	-	chr4	72282040	72568796	ADAMTS3|ENST00000622135.1	-	72282040,72282461,72288750,72290854,72295653,72298276,72303916,72305986,72309396,72311047,72312290,72313676,72315857,72318571,72319331,72319857,72320713,72323013,72339493,72414814,72548477,72567373,72568693	72282193,72283704,72288868,72291062,72295786,72298442,72304080,72306067,72309520,72311181,72312466,72313822,72315971,72318704,72319475,72319963,72320870,72323097,72339693,72414971,72548884,72567401,72568796	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	177499629	177499696	177499695	+	RAMPAGE_only	2	2	11	0.375314	3.095795	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.636364
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	235110548	235110628	235110627	-	RAMPAGE_only	8	8	31	1.057704	4.461092	chr1	235110540	235110668	SINE|MIR|MIR3	-	chr1	235109335	235128936	TOMM20|ENST00000366607.4	-	235109335,235113767,235119817,235122325,235128594	235112108,235113910,235119899,235122372,235128936	0.935484
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	50737332	50737445	50737346	+	RAMPAGE_only	3	3	29	0.989465	4.384517	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50744660	50750847	LUC7L3|ENST00000504065.5	+	50744660,50745719,50746541,50749218,50750500	50744813,50746003,50746702,50749344,50750847	0.551724
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	193614844	193614861	193614860	+	High_confidence	8	8	14	0.477673	3.334679	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	103129600	103129702	103129653	+	High_confidence	2	2	19	0.648270	3.721612	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	78955563	78955564	78955563	+	RAMPAGE_only	9	9	9	0.307075	2.947703	chr12	78955385	78955684	LTR|ERVL-MaLR|MLT1A0	-	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	153489621	153489622	153489621	+	High_confidence	11	11	11	0.375314	2.663533	chr5	153489486	153489624	SINE|MIR|MIRb	+	chr5	153489614	153706172	GRIA1|ENST00000481559.6	+	153489614,153493927,153646927,153650329,153655818,153674499,153676993,153686224,153698043,153698866,153705696	153489837,153494065,153647167,153650514,153655872,153674661,153677161,153686329,153698154,153699073,153706172	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	155679929	155679930	155679929	-	High_confidence	12	12	12	0.409434	3.084963	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	104507227	104507243	104507235	+	RAMPAGE_only	3	4	10	0.341195	2.947703	chr2	104507130	104507346	SINE|MIR|MIR	-	chr2	104434377	104512757	LINC01102|ENST00000447380.1	+	104434377,104505865,104507231,104512042	104434523,104506303,104507406,104512757	0.600000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	95041557	95041589	95041557	-	RAMPAGE_only	3	3	16	0.545912	3.373557	chr1	95041410	95041646	SINE|Alu|AluJo	+	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.812500
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	49495593	49495629	49495593	+	High_confidence	5	5	17	0.580031	3.452820	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495609	49528992	PHF11|NM_001040443.2	+	49495609,49506634,49513058,49518017,49520893,49522042,49523174,49524084,49526386,49528510	49496095,49506756,49513166,49518151,49520940,49522107,49523241,49524216,49526458,49528992	0.941176
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	10760600	10760620	10760600	+	RAMPAGE_only	3	3	8	0.272956	2.807355	chr10	10760516	10761417	LINE|L2|L2c	-	chr10	10461951	10776678	MSTRG.2540.2	+	10461951,10682455,10758152	10462586,10682494,10776678	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	11193340	11193380	11193340	+	High_confidence	4	5	13	0.443553	3.392747	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.615385
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	19280651	19280681	19280660	-	High_confidence	2	2	12	0.409434	3.095795	chr19	19280527	19280614	SINE|MIR|MIRb	-	chr19	19276514	19281492	SUGP1|ENST00000592188.1	-	19276514,19276946,19277733,19278689,19279212,19280184	19276674,19277076,19277879,19278796,19279390,19281492	0.916667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	110606576	110606577	110606576	-	RAMPAGE_only	12	12	15	0.511792	3.773557	chr11	110606493	110606587	LINE|RTE-BovB|MamRTE1	-	chr11	110577042	110589685	ARHGAP20|ENST00000529591.5	-	110577042,110579391,110582320,110583547,110586215,110589421	110577152,110581225,110582435,110583737,110586325,110589685	0.600000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	9391827	9391828	9391827	-	RAMPAGE_only	17	17	18	0.614151	3.146286	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9385794	9397428	THUMPD3-AS1|ENST00000521609.5	-	9385794,9388086,9390279,9391426,9397423	9385923,9388127,9390497,9391826,9397428	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	95869893	95869990	95869936	+	RAMPAGE_only	5	6	34	1.160063	4.513795	chr7	95869931	95869979	LINE|L2|L2	-	chr7	95837617	96028321	DYNC1I1|ENST00000519371.1	+	95837617,95869882,95977511,95984814,95987055,95995947,96028174	95837649,95869998,95977601,95984977,95987155,95996073,96028321	0.705882
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	61952970	61953008	61952970	-	RAMPAGE_only	6	6	28	0.955346	3.740416	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	4726633	4726634	4726633	-	RAMPAGE_only	12	12	12	0.409434	3.418296	chr9	4725911	4728263	DNA|TcMar-Tigger|Tigger1	-	chr9	4712044	4741227	MSTRG.23526.3	-	4712044,4718418,4719134,4722505,4726082	4713096,4718537,4719307,4722625,4741227	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	28224858	28224877	28224866	+	High_confidence	3	4	18	0.614151	3.947703	chr6	28224900	28225028	LINE|L1|HAL1ME	+	chr6	28224885	28227207	ZSCAN9|ENST00000531941.1	+	28224885,28227011	28225268,28227207	0.666667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	123060135	123060256	123060183	-	High_confidence	40	42	772	26.340252	5.773809	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.695596
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	94234072	94234073	94234072	+	RAMPAGE_only	8	8	10	0.341195	2.725481	chr4	94234038	94234182	SINE|MIR|MIR3	-	chr4	94208083	94289899	SMARCAD1|ENST00000394961.6	+	94208083,94208345,94213034,94226118,94233953,94236951,94240905,94249653,94250751,94252615,94264706,94270727,94273616,94274737,94274889,94276338,94277021,94278421,94278615,94278922,94280591,94281471,94283120,94284959,94289472	94208242,94208584,94213152,94226296,94234122,94237018,94241006,94249755,94250833,94253007,94264906,94270818,94273716,94274797,94274965,94276474,94277159,94278517,94278733,94279050,94280780,94281590,94283303,94285069,94289899	0.700000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	39809803	39809879	39809858	-	High_confidence	17	27	104	3.548428	5.058036	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.778846
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	160199150	160199156	160199150	+	High_confidence	37	37	81	2.763679	4.240828	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.962963
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	45716972	45717290	45717154	+	RAMPAGE_only	35	35	514	17.537422	4.817291	chr7	45716652	45717205	LTR|ERVL-MaLR|MLT1E2	+	chr7	45574525	45723116	ADCY1|NM_021116.2	+	45574525,45592758,45610378,45622631,45648669,45657726,45660041,45662058,45677868,45678165,45679708,45684978,45685961,45686546,45703375,45703599,45704517,45708349,45710527,45713692	45575182,45592908,45610497,45622743,45648797,45657885,45660183,45662214,45678063,45678263,45679793,45685068,45686215,45686673,45703492,45703746,45704616,45708464,45710652,45723116	0.998054
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	6673446	6673447	6673446	+	High_confidence	16	16	16	0.545912	3.625000	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	148433428	148433429	148433428	+	RAMPAGE_only	5	5	7	0.238836	2.584963	chr1	148433382	148433731	LTR|ERV1|MER66-int	-	chr1	148442300	148448609	MSTRG.1587.1	+	148442300	148448609	0.714286
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	94234014	94234041	94234040	+	RAMPAGE_only	3	3	11	0.375314	3.095795	chr4	94234038	94234182	SINE|MIR|MIR3	-	chr4	94208083	94289899	SMARCAD1|ENST00000394961.6	+	94208083,94208345,94213034,94226118,94233953,94236951,94240905,94249653,94250751,94252615,94264706,94270727,94273616,94274737,94274889,94276338,94277021,94278421,94278615,94278922,94280591,94281471,94283120,94284959,94289472	94208242,94208584,94213152,94226296,94234122,94237018,94241006,94249755,94250833,94253007,94264906,94270818,94273716,94274797,94274965,94276474,94277159,94278517,94278733,94279050,94280780,94281590,94283303,94285069,94289899	0.909091
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	37631061	37631100	37631099	+	High_confidence	3	3	8	0.272956	2.807355	chr22	37631132	37631272	SINE|MIR|MIR1_Amn	+	chr22	37630667	37632677	GGA1|ENST00000460957.1	+	37630667,37631995,37632404,37632600	37631099,37632165,37632515,37632677	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	34244692	34244699	34244698	-	RAMPAGE_only	5	6	10	0.341195	3.121928	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34218343	AC138409.2|ENST00000507274.1	-	34175821,34179012,34182679,34218294	34175957,34179097,34182867,34218343	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	45923392	45923403	45923392	-	RAMPAGE_only	4	5	8	0.272956	2.500000	chr11	45923239	45923392	SINE|MIR|MIR3	+	chr11	45910204	45918812	PEX16|ENST00000532681.5	-	45910204,45910897,45913818,45914130,45914315,45914603,45915467,45915702,45916226,45917457,45918121	45910312,45910962,45913938,45914203,45914468,45914684,45915568,45915836,45916303,45917493,45918812	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	24158804	24158844	24158804	-	High_confidence	28	30	117	3.991981	5.559339	chr11	24154855	24160018	LINE|L1|L1PA16	+	chr11	24074068	24158842	MSTRG.3781.1	-	24074068,24139862,24158369	24119123,24139939,24158842	0.948718
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	43079892	43079946	43079945	+	RAMPAGE_only	4	5	14	0.477673	3.392747	chr8	43078293	43080600	DNA|TcMar-Tigger|Tigger1	+	chr8	43076646	43085780	FNTA|ENST00000525099.1	+	43076646,43084709,43085159	43083180,43084881,43085780	0.928571
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	99155935	99155953	99155935	-	High_confidence	14	18	55	1.876572	5.020189	chr12	99155702	99156003	LINE|CR1|L3	-	chr12	98743973	99155090	ANKS1B|NM_001204067.1	-	98743973,98751354,98773041,98781116,98782125,98798933,98800996,98832028,99053156,99084924,99154288,99154969	98745846,98751522,98773179,98781203,98782137,98799005,98801125,98832136,99053309,99085023,99154395,99155090	0.618182
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	123272361	123272378	123272368	-	High_confidence	3	3	15	0.511792	3.378783	chr12	123272292	123272359	DNA|hAT-Charlie|Charlie4z	-	chr12	123261275	123272334	CDK2AP1|ENST00000544658.5	-	123261275,123265195,123267184,123272156	123261803,123265322,123267282,123272334	0.933333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	88784774	88784891	88784890	+	RAMPAGE_only	31	32	414	14.125472	5.043087	chr2	88784858	88784980	DNA|hAT-Charlie|MER5A1	-	chr2	88782711	88805403	ANKRD36BP2|ENST00000575193.1	+	88782711,88782852,88784597,88784720,88786469,88786590,88788317,88788441,88792420,88797281,88801053,88802712,88804379,88804786,88805378	88782762,88782925,88784626,88784793,88786498,88786663,88788346,88788514,88792494,88797423,88801309,88802865,88804450,88804880,88805403	0.995169
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	4129116	4129148	4129135	+	RAMPAGE_only	2	3	9	0.307075	2.750000	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	29970285	29970359	29970358	-	High_confidence	25	26	95	3.241352	5.619585	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	0.757895
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	28957948	28957976	28957948	-	High_confidence	3	3	14	0.477673	3.378783	chr17	28957774	28957913	SINE|MIR|MIR	-	chr17	28956363	28957813	SEZ6|ENST00000544224.2	-	28956363,28956718,28957044,28957347	28956467,28956757,28957242,28957813	0.642857
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	80521929	80521956	80521929	+	RAMPAGE_only	2	2	9	0.307075	2.750000	chr10	80521722	80521930	SINE|Alu|AluY	+	chr10	80454329	80522631	TSPAN14|ENST00000372164.7	+	80454329,80489216,80507227,80509300,80512143,80514018,80516203,80517904	80454371,80489314,80507374,80509471,80512269,80514063,80516323,80522631	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	51403418	51403433	51403428	-	RAMPAGE_only	11	11	24	0.818868	3.936260	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.916667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	113873326	113873343	113873342	-	High_confidence	3	3	6	0.204717	2.584963	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	34588450	34588453	34588452	-	High_confidence	4	9	10	0.341195	2.725481	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	77184620	77184624	77184620	+	RAMPAGE_only	3	3	8	0.272956	2.521641	chr3	77184293	77184650	LINE|L2|L2c	-	chr3	76272980	77317633	MSTRG.16917.8	+	76272980,77098013,77164659	76311417,77164386,77317633	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	77736969	77736996	77736969	-	High_confidence	3	3	12	0.409434	3.277613	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	103684987	103685004	103685003	+	RAMPAGE_only	6	6	18	0.614151	3.734522	chr14	103684918	103685042	SINE|MIR|MIRc	-	chr14	103629296	103701513	MSTRG.7523.35	+	103629296,103654563,103657545,103662115,103662701,103669510,103670181,103673013,103673331,103675551,103675688,103677414,103679383,103684985,103685637,103700654,103701200	103629494,103654825,103657776,103662194,103662921,103669598,103670283,103673187,103673431,103675601,103675756,103677523,103679518,103685036,103687211,103700727,103701513	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	33512764	33512786	33512785	-	High_confidence	7	8	15	0.511792	2.950212	chr8	33512781	33512904	SINE|Alu|AluYc3	+	chr8	33499117	33512712	TTI2|ENST00000520636.5	-	33499117,33500327,33503428,33503747,33509745,33511966	33499277,33500490,33503572,33503935,33509932,33512712	0.866667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	57746128	57746129	57746128	+	High_confidence	36	37	37	1.262421	3.762396	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.972973
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	110161239	110161258	110161239	+	RAMPAGE_only	3	4	7	0.238836	2.521641	chr12	110161134	110161447	SINE|Alu|AluSx	-	chr12	110171894	110191061	IFT81|ENST00000551055.1	+	110171894,110180421,110190919	110172086,110180571,110191061	0.714286
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	112258405	112258406	112258405	+	RAMPAGE_only	6	6	7	0.238836	2.584963	chr4	112258332	112258642	LINE|L2|L2c	-	chr4	112231738	112273110	AP1AR|NR_136622.1	+	112231738,112253207,112254746,112257771,112260765,112262987,112265012,112265733,112266587,112268143	112232174,112253256,112254773,112257797,112260862,112263086,112265067,112265807,112266716,112273110	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	55618850	55618904	55618869	-	High_confidence	13	13	53	1.808333	5.226251	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.849057
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	98698113	98698145	98698144	+	RAMPAGE_only	22	23	137	4.674371	4.900650	chr1	98698112	98698412	LINE|L2|L2c	-	chr1	98661722	98760500	SNX7|ENST00000306121.7	+	98661722,98684884,98691074,98691534,98695517,98698705,98701816,98738236,98760053	98661911,98685067,98691185,98691699,98695716,98698905,98701903,98738389,98760500	0.897810
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	134738042	134738049	134738047	+	High_confidence	4	5	9	0.307075	2.750000	chr5	134737989	134738315	SINE|Alu|AluSg	-	chr5	134738479	134752160	CAMLG|NM_001745.3	+	134738479,134741062,134743986,134750758	134738792,134741523,134744052,134752160	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50783214	50783215	50783214	+	High_confidence	9	9	9	0.307075	2.947703	chr22	50783102	50783247	SINE|Alu|AluJr	-	chr22	50783253	50799305	RPL23AP82|ENST00000467796.5	+	50783253,50785172,50798654	50783294,50785293,50799305	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	70453646	70453653	70453646	+	RAMPAGE_only	2	3	7	0.238836	2.521641	chrX	70453648	70453712	DNA|hAT-Ac|OldhAT1	+	chrX	70452304	70505487	DLG3|ENST00000374355.7	+	70452304,70453636,70454213,70479149,70492106,70492520,70493375,70497179,70498519,70499175,70499876,70500470,70500897,70502162	70452755,70453793,70454316,70479264,70492283,70492596,70493475,70497221,70498570,70499277,70500049,70500580,70500989,70505487	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	84086717	84086746	84086745	+	RAMPAGE_only	3	3	9	0.307075	2.750000	chr13	84085604	84086932	LTR|ERV1|LTR12C	-	chr13	84140601	84606768	LINC00333|NR_046871.1	+	84140601,84238539,84242062,84562363,84562608,84562791,84606705	84140643,84238600,84242097,84562463,84562676,84563234,84606768	0.555556
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	17617796	17617822	17617796	-	High_confidence	2	2	11	0.375314	2.646439	chr10	17617759	17617913	SINE|Alu|FRAM	-	chr10	17589031	17617377	HACD1|ENST00000361271.7	-	17589031,17594204,17599289,17603559,17603725,17603929,17617082	17590446,17594383,17599411,17603648,17603744,17604047,17617377	0.545455
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	13954626	13954650	13954649	+	RAMPAGE_only	4	4	8	0.272956	2.521641	chr19	13954698	13954794	SINE|MIR|MIRb	+	chr19	13952506	13961444	DCAF15|NM_138353.2	+	13952506,13954339,13954525,13955911,13956122,13956351,13959044,13959581,13959766,13959983,13960286,13960464,13960939	13952644,13954437,13954661,13956018,13956262,13956522,13959479,13959673,13959895,13960069,13960391,13960580,13961444	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	52891322	52891328	52891322	-	High_confidence	2	2	7	0.238836	2.584963	chr19	52891172	52891371	SINE|Alu|AluSz	+	chr19	52876171	52891346	ZNF320|NM_207333.2	-	52876171,52888126,52890240,52891228	52881983,52888253,52890328,52891346	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	21544656	21544692	21544670	-	RAMPAGE_only	57	63	211	7.199214	6.072998	chr4	21544311	21544682	LTR|ERVL-MaLR|MLT1E2	-	chr4	21512103	21589294	MSTRG.17886.10	-	21512103,21512188	21512164,21589294	0.853081
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	185620084	185620100	185620090	-	RAMPAGE_only	2	2	9	0.307075	2.750000	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.555556
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	154891243	154891256	154891243	-	RAMPAGE_only	4	5	9	0.307075	2.947703	chr5	154891062	154891194	SINE|Alu|FLAM_C	-	chr5	154887415	154938209	GEMIN5|ENST00000285873.7	-	154887415,154889320,154891240,154892386,154896091,154898439,154899190,154901338,154902538,154903079,154904506,154905362,154907590,154911726,154912898,154916997,154917930,154919966,154921342,154924468,154925861,154927384,154928526,154931457,154932098,154935840,154937024,154937967	154888377,154889417,154891742,154892549,154896343,154898650,154899310,154901486,154902676,154903175,154904629,154905476,154907818,154911898,154913038,154917179,154918004,154920103,154921425,154924554,154926074,154927550,154928659,154931577,154932250,154936022,154937185,154938209	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	212488261	212488283	212488266	-	RAMPAGE_only	10	10	27	0.921226	4.032303	chr2	212487976	212488313	LINE|L2|L2a	+	chr2	212267922	212538529	MSTRG.14627.11	-	212267922,212391649,212426361	212391609,212426275,212538529	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	111387772	111387778	111387772	-	RAMPAGE_only	1	1	7	0.238836	2.584963	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.714286
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	104931691	104931708	104931691	-	RAMPAGE_only	2	2	7	0.238836	2.584963	chr12	104931423	104931666	LINE|L2|L2a	-	chr12	104803496	104928694	SLC41A2|NM_032148.3	-	104803496,104844471,104845842,104861290,104866431,104886292,104889032,104895273,104909654,104927972	104805337,104844620,104845974,104861370,104866579,104886439,104889177,104895345,104909762,104928694	0.714286
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	46759942	46759952	46759942	+	High_confidence	2	2	7	0.238836	2.807355	chr18	46759742	46760334	LTR|ERVL-MaLR|MLT1E3	+	chr18	46759723	46764408	AC090241.2|ENST00000624895.1	+	46759723	46764408	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	85653637	85653670	85653651	-	RAMPAGE_only	3	3	9	0.307075	2.750000	chr1	85653484	85653757	SINE|Alu|AluJr	+	chr1	85652807	85708418	ZNHIT6|ENST00000370574.3	-	85652807,85657846,85677235,85678700,85680835,85702156,85706077,85706248,85706441,85707628	85654098,85657971,85677313,85678781,85680904,85702260,85706163,85706355,85706507,85708418	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	100919985	100920050	100919985	-	RAMPAGE_only	5	7	23	0.784748	3.969002	chr8	100919701	100920019	LTR|ERV1|MER34B-int	-	chr8	100918575	100950571	YWHAZ|NM_001135702.1	-	100918575,100923954,100924134,100924915,100948595,100950405	100920752,100924050,100924298,100925039,100948900,100950571	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	199955964	199956000	199955999	+	High_confidence	3	3	10	0.341195	2.947703	chr2	199955996	199956125	LINE|L1|L1MDb	+	chr2	199955820	200008540	MAIP1|ENST00000435773.2	+	199955820,199959267,199959753,200005742,200008465	199956248,199959339,199959880,200005777,200008540	0.800000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	111490330	111490464	111490463	+	RAMPAGE_only	17	17	79	2.695440	3.979527	chr5	111490326	111490605	SINE|Alu|AluSq	+	chr5	111224541	111494886	CAMK4|NM_001323377.1	+	111224541,111344023,111374849,111394709,111446685,111449128,111473310,111478380,111482784,111484025	111224644,111344102,111374912,111394782,111446776,111449203,111473386,111478507,111482937,111494886	0.974684
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	40453541	40453547	40453541	-	High_confidence	12	12	27	0.921226	4.363713	chr2	40453521	40453703	DNA|hAT-Charlie|MER5B	+	chr2	40115252	40453438	MSTRG.13360.9	-	40115252,40139400,40160764,40164853,40170280,40174824,40178386,40428472,40453160	40115629,40139676,40160864,40164984,40170349,40174842,40178493,40430304,40453438	0.925926
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	99471746	99471763	99471746	-	RAMPAGE_only	11	12	36	1.228302	3.639598	chr7	99471609	99471877	SINE|Alu|AluSx1	+	chr7	99458194	99466331	ATP5MF|ENST00000292475.7	-	99458194,99459146,99460085,99466110	99458355,99459263,99460193,99466331	0.972222
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	40363322	40363359	40363322	-	RAMPAGE_only	25	27	85	2.900157	5.270417	chr6	40362782	40364444	LINE|L1|L1MEc	+	chr6	40358743	40369474	AL139275.1|ENST00000447315.1	-	40358743,40369388	40359481,40369474	0.929412
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	18149868	18149871	18149868	+	High_confidence	6	6	15	0.511792	2.950212	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.933333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	283475	283509	283508	+	High_confidence	3	6	12	0.409434	3.418296	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.833333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	53244321	53244562	53244369	-	RAMPAGE_only	19	19	274	9.348742	4.354780	chr1	53244331	53244375	SINE|MIR|MIR3	+	chr1	53242363	53328014	LRP8|ENST00000306052.10	-	53242363,53249379,53250689,53255116,53257239,53258318,53260463,53262067,53262445,53264168,53266472,53271027,53271226,53275630,53276691,53280586,53289566,53326872,53327788	53247056,53249556,53250862,53255185,53257464,53258471,53260605,53262207,53262564,53264396,53266647,53271153,53271346,53275753,53277078,53280715,53289689,53326992,53328014	0.996350
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	24554403	24554430	24554403	+	RAMPAGE_only	3	5	12	0.409434	3.095795	chr2	24554383	24554473	LTR|ERV1|LTR9	-	chr2	24564309	24768543	NCOA1|ENST00000407230.5	+	24564309,24584475,24643965,24658660,24673365,24682950,24691480,24693251,24697657,24705085,24706567,24710930,24726588,24728307,24729500,24739431,24741783,24751981,24757972,24762686,24768078,24768223	24564430,24584560,24644122,24658766,24673463,24683128,24691660,24693347,24697798,24705233,24707888,24711111,24726706,24728476,24729815,24739533,24742186,24752156,24758156,24762776,24768135,24768543	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	67571164	67571206	67571164	+	High_confidence	2	3	19	0.648270	3.932138	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	44391330	44391331	44391330	+	RAMPAGE_only	7	7	7	0.238836	2.807355	chr3	44391184	44391489	SINE|Alu|AluSx4	-	chr3	44396786	44407740	TCAIM|ENST00000469246.1	+	44396786,44400521,44401202,44407441	44396834,44400587,44401334,44407740	0.714286
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	29581428	29581441	29581428	-	High_confidence	4	4	11	0.375314	2.732159	chr22	29581354	29581661	SINE|Alu|AluY	-	chr22	29554807	29581337	NIPSNAP1|ENST00000216121.11	-	29554807,29558869,29560733,29561170,29561505,29561791,29569192,29570161,29570404,29580984	29555999,29558953,29560828,29561202,29561646,29561862,29569287,29570207,29570532,29581337	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	10837738	10837752	10837738	-	High_confidence	4	4	9	0.307075	2.750000	chr2	10837493	10837716	SINE|MIR|MIR	-	chr2	10783390	10837977	PDIA6|NM_001282705.1	-	10783390,10784933,10787280,10788696,10788896,10789748,10790718,10791794,10793095,10797080,10797699,10802498,10819273,10837523	10784326,10785030,10787439,10788769,10788981,10789889,10790833,10791925,10793202,10797207,10797757,10802640,10819354,10837977	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	152074285	152074297	152074296	+	High_confidence	4	5	8	0.272956	2.521641	chr7	152073014	152074601	LINE|L1|L1MA5A	-	chr7	152074297	152122160	GALNT11|ENST00000434507.5	+	152074297,152075009,152079286,152094189,152100797,152103111,152105244,152108037,152110527,152113245,152117156,152118677,152120830,152121545	152074403,152075180,152079408,152094522,152100921,152103278,152105370,152108287,152110645,152113398,152117375,152118782,152120968,152122160	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	56272330	56272412	56272344	+	High_confidence	8	8	54	1.842453	5.336319	chr4	56272344	56272407	LINE|CR1|L3	+	chr4	56272403	56328092	KIAA1211|ENST00000541073.5	+	56272403,56298213,56301225,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56272492,56298349,56301247,56307699,56310734,56313379,56316689,56323567,56324266,56328092	0.981481
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	9567540	9567549	9567540	+	RAMPAGE_only	3	3	8	0.272956	2.500000	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9557313	9576275	AC092821.1|ENST00000520314.2	+	9557313,9558368,9559174,9560109,9560816,9565091,9567489,9570765,9571460,9573002,9573465,9574846	9557580,9558452,9559348,9560191,9564325,9565303,9569202,9570892,9571573,9573093,9573534,9576275	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	11795578	11795579	11795578	+	High_confidence	13	13	18	0.614151	3.239098	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	3195772	3195779	3195772	-	High_confidence	23	26	39	1.330660	4.528741	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.948718
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	67730126	67730149	67730137	+	RAMPAGE_only	8	8	17	0.580031	3.500000	chr4	67729869	67730216	LTR|ERVL-MaLR|MLT1A	+	chr4	67701360	68080952	UBA6-AS1|ENST00000500538.6	+	67701360,67720421,67728539,67730073,67731505,67755188,68062606,68080120	67701484,67721051,67728686,67730170,67732345,67755255,68063221,68080952	0.882353
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	49867874	49867898	49867884	-	High_confidence	5	5	22	0.750629	4.004886	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49861203	49867886	PNKP|ENST00000322344.7	-	49861203,49861448,49861607,49861771,49862043,49862184,49862370,49862537,49862689,49863688,49863963,49864178,49864323,49865126,49866398,49867053,49867468	49861365,49861510,49861695,49861881,49862105,49862281,49862463,49862608,49862738,49863760,49864071,49864236,49864403,49865426,49866445,49867217,49867886	0.863636
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	45738416	45738430	45738429	+	High_confidence	7	7	13	0.443553	3.022055	chr22	45738337	45738465	DNA|DNA|UCON78	+	chr22	45738473	45843671	ATXN10|ENST00000493643.3	+	45738473,45738730,45740368,45806958,45842990,45843668	45738556,45738839,45740538,45807022,45843178,45843671	0.692308
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	130692954	130692992	130692962	+	High_confidence	12	12	93	3.173113	5.395065	chr2	130693010	130693142	SINE|Alu|AluY	+	chr2	130693281	130696388	FAR2P3|ENST00000434289.1	+	130693281,130696341	130693796,130696388	0.892473
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	129338511	129338521	129338511	+	RAMPAGE_only	11	12	40	1.364780	3.347085	chr9	129338481	129338896	LTR|ERV1|MER41C	-	chr9	129336922	129347477	LINC01503|NR_120686.1	+	129336922,129338791,129341831,129347225	129336988,129338917,129342043,129347477	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	18794054	18794086	18794077	+	High_confidence	14	14	58	1.978931	4.429263	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.965517
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	12927733	12927753	12927733	+	High_confidence	6	6	14	0.477673	3.378783	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.785714
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	179397807	179397895	179397807	-	RAMPAGE_only	2	2	20	0.682390	3.584184	chr3	179397743	179398028	SINE|Alu|AluSg7	-	chr3	179396087	179451583	GNB4|NM_021629.3	-	179396087,179405189,179413411,179413714,179414884,179416492,179419398,179420888,179426143,179451345	179401319,179405406,179413613,179413781,179415047,179416556,179419505,179420927,179426242,179451583	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	45574153	45574154	45574153	+	High_confidence	8	8	8	0.272956	2.500000	chr7	45574142	45574208	SINE|MIR|MIRc	-	chr7	45574139	45664672	ADCY1|ENST00000432715.5	+	45574139,45574888,45592758,45610378,45622631,45648669,45657726,45660041,45662058,45664288	45574188,45575182,45592908,45610497,45622743,45648797,45657885,45660183,45662214,45664672	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	31587194	31587252	31587201	+	High_confidence	7	7	58	1.978931	4.510362	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.982759
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	72871543	72871573	72871572	+	High_confidence	4	4	13	0.443553	3.392747	chr5	72871451	72871813	LINE|L2|L2a	-	chr5	72871746	72883099	TNPO1|ENST00000508762.5	+	72871746,72872638,72875614,72877227,72882466,72883063	72871889,72872720,72875737,72877346,72882527,72883099	0.615385
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	175787545	175787626	175787625	-	High_confidence	36	38	117	3.991981	6.207368	chr4	175787512	175787708	LINE|L2|L2	+	chr4	175632936	175787676	GPM6A|NM_001261448.1	-	175632936,175640128,175640752,175651833,175673679,175701574,175787335	175635057,175640194,175640829,175651987,175673836,175701767,175787676	0.649573
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	77132596	77132622	77132596	-	RAMPAGE_only	2	2	9	0.307075	2.750000	chr14	77132512	77132581	LINE|CR1|L3	-	chr14	77131269	77141791	ZDHHC22|ENST00000319374.4	-	77131269,77139212,77141602	77133948,77139752,77141791	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	38612597	38612623	38612622	+	RAMPAGE_only	6	7	16	0.545912	3.456565	chrX	38612500	38614189	LINE|L1|HAL1	-	chrX	38561543	38688271	TSPAN7|ENST00000475216.5	+	38561543,38622902,38666120,38671375,38674220,38675704,38681203,38687598,38687938	38561627,38623033,38666309,38671450,38674316,38675860,38681287,38687674,38688271	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	43063814	43063852	43063814	-	RAMPAGE_only	3	6	16	0.545912	3.506891	chr22	43063462	43063765	SINE|Alu|AluSx1	-	chr22	43039775	43075586	TTLL1|ENST00000331018.8	-	43039775,43046409,43059383,43063812,43064189,43068409,43069635,43075473	43039905,43046573,43059527,43063921,43064324,43068590,43069844,43075586	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	52169663	52169693	52169692	-	High_confidence	5	5	15	0.511792	3.640224	chr19	52169654	52169811	SINE|Alu|AluJb	+	chr19	52157365	52170386	ZNF836|ENST00000596428.5	-	52157365,52160464,52168057,52169647,52170359	52157540,52160591,52168152,52169781,52170386	0.733333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	39310261	39310283	39310282	+	RAMPAGE_only	5	5	15	0.511792	3.664498	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.933333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	99893444	99893445	99893444	-	High_confidence	8	8	11	0.375314	3.321928	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.909091
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	197596814	197596819	197596814	-	RAMPAGE_only	1	2	7	0.238836	2.584963	chr2	197596323	197596769	LINE|L1|L1ME4c	-	chr2	197571734	197618021	RFTN2|ENST00000494346.1	-	197571734,197595990,197615875,197617799	197572280,197596069,197615979,197618021	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	198878314	198878331	198878314	-	RAMPAGE_only	3	3	11	0.375314	3.121928	chr1	198878212	198878568	LTR|ERVL-MaLR|THE1B	+	chr1	198859043	198937410	MSTRG.2057.4	-	198859043,198897121	198897066,198937410	0.909091
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	193656716	193656717	193656716	+	RAMPAGE_only	9	9	12	0.409434	3.022055	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193648765	193659514	OPA1|ENST00000482865.1	+	193648765,193654861,193657079,193658886,193659481	193648871,193655027,193657232,193658995,193659514	0.833333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	104756435	104756436	104756435	-	RAMPAGE_only	6	6	8	0.272956	3.000000	chr2	104756234	104756423	SINE|MIR|MIRb	-	chr2	104746636	104757719	LINC01114|NR_038231.1	-	104746636,104749321,104754325,104756080	104747151,104749489,104754440,104757719	0.625000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	9986881	9986905	9986904	+	High_confidence	11	11	43	1.467138	5.193707	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.534884
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	104812518	104812573	104812518	-	RAMPAGE_only	4	5	24	0.818868	3.938722	chr2	104812167	104812579	LINE|L1|L1ME3A	+	chr2	104807572	104851453	PANTR1|ENST00000443988.5	-	104807572,104812432,104812708,104851311	104807843,104812618,104812784,104851453	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	14432828	14432861	14432860	+	High_confidence	6	6	24	0.818868	4.262692	chr19	14432724	14432906	SINE|MIR|MIRb	-	chr19	14433052	14446436	PKN1|ENST00000585619.5	+	14433052,14441142,14443469,14446425	14433170,14441443,14443621,14446436	0.708333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	86780405	86780417	86780413	+	RAMPAGE_only	3	4	12	0.409434	3.095795	chr4	86780459	86780984	LINE|L1|L1ME1	+	chr4	86635251	86815149	PTPN13|ENST00000511467.1	+	86635251,86672364,86686709,86689004,86693586,86701240,86716529,86717023,86722211,86732399,86732591,86734302,86734736,86735593,86741633,86744965,86750469,86751026,86753008,86758259,86758677,86758941,86762726,86764592,86765394,86766431,86767816,86769768,86770100,86771170,86772777,86774372,86775170,86775441,86780401,86782200,86784464,86785230,86785847,86796873,86799100,86803708,86805278,86807559,86809768,86811045,86814455	86635371,86672543,86686775,86689190,86693674,86701801,86716625,86717117,86722434,86732474,86732766,86734456,86734875,86735746,86741816,86745128,86750887,86751124,86753065,86758349,86758785,86759073,86763190,86764739,86765488,86766517,86767976,86769983,86770199,86771535,86772958,86774531,86775342,86775652,86780472,86782262,86784558,86785368,86785936,86796929,86799204,86803857,86805369,86807897,86809984,86811108,86815149	0.916667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	43596458	43596498	43596497	+	RAMPAGE_only	4	4	13	0.443553	2.873141	chr20	43596538	43596727	SINE|MIR|MIRb	+	chr20	43590989	43647222	IFT52|ENST00000373039.4	+	43590989,43594692,43596434,43603759,43604182,43605001,43613849,43618939,43620856,43623890,43635925,43637144,43642478,43646935	43591029,43594817,43596522,43603889,43604258,43605073,43613976,43619026,43620925,43624045,43636013,43637253,43642624,43647222	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	155869846	155869882	155869881	+	RAMPAGE_only	4	4	21	0.716509	3.916127	chr1	155869840	155870033	SINE|MIR|MIR	+	chr1	155859508	155885199	SYT11|ENST00000368324.4	+	155859508,155867964,155880499,155881197	155859795,155868791,155880623,155885199	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	123179220	123179221	123179220	-	RAMPAGE_only	11	11	16	0.545912	3.773557	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.812500
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	144008875	144008887	144008886	-	RAMPAGE_only	4	7	13	0.443553	3.022055	chr6	144008773	144008892	SINE|MIR|MIRb	-	chr6	143968608	144064540	PLAGL1|ENST00000493898.1	-	143968608,143985134,144064467	143968978,143985196,144064540	0.615385
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	18063185	18063218	18063215	-	High_confidence	3	4	13	0.443553	3.418296	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.923077
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	76779898	76780313	76780312	+	RAMPAGE_only	22	23	363	12.385378	6.492866	chr14	76780307	76780463	LINE|CR1|L3	+	chr14	76762188	76783015	VASH1|ENST00000167106.8	+	76762188,76769962,76771189,76773136,76775891,76777958,76778945	76763130,76770051,76771246,76773211,76776273,76778071,76783015	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	37465349	37465350	37465349	-	RAMPAGE_only	8	10	10	0.341195	2.921928	chr19	37464765	37465454	LINE|L2|L2a	+	chr19	37411154	37467229	ZNF569|ENST00000392149.6	-	37411154,37425867,37426251,37444906,37467086	37414419,37425963,37426378,37444964,37467229	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	101202392	101202435	101202434	-	High_confidence	3	3	10	0.341195	2.921928	chr8	101202158	101202485	SINE|Alu|AluSg7	+	chr8	101198936	101201657	ZNF706|ENST00000519103.1	-	101198936,101199989,101201606	101199239,101200123,101201657	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	41982019	41982092	41982028	-	RAMPAGE_only	6	6	31	1.057704	3.905924	chr19	41982026	41982072	LINE|CR1|L3	-	chr19	41966581	41993467	ATP1A3|NM_001256213.1	-	41966581,41967248,41967661,41968784,41969434,41970184,41970387,41975628,41976415,41977935,41978150,41978605,41981501,41981721,41981907,41984917,41985305,41985863,41986115,41987935,41988317,41988475,41993392	41966965,41967340,41967763,41968915,41969580,41970308,41970542,41975797,41976566,41978072,41978326,41978798,41981636,41981831,41982106,41985186,41985423,41985998,41986229,41988139,41988377,41988562,41993467	0.935484
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	15758206	15758229	15758211	+	High_confidence	7	7	18	0.614151	3.690117	chr1	15758111	15758311	SINE|MIR|MIRb	-	chr1	15758418	15786594	FBLIM1|ENST00000375766.7	+	15758418,15764495,15764963,15767375,15768527,15770408,15774617,15777169,15784547	15758848,15764685,15765233,15767563,15768630,15770578,15774796,15777287,15786594	0.944444
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	153872155	153872206	153872184	+	High_confidence	4	4	20	0.682390	4.121928	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871952	154450694	MSTRG.14182.2	+	153871952,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396125,154438726,154450694	0.950000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	15780729	15780740	15780729	-	High_confidence	29	30	69	2.354245	4.655724	chr12	15780696	15780826	LINE|L2|L2c	+	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.695652
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	99410096	99410113	99410112	+	High_confidence	8	8	14	0.477673	3.546594	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.785714
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	28792287	28792291	28792287	+	RAMPAGE_only	5	5	11	0.375314	3.321928	chr14	28792290	28792598	SINE|Alu|AluYb8	+	chr14	28785870	28792803	LINC01551|ENST00000550266.1	+	28785870,28786487,28792469	28785941,28786537,28792803	0.636364
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	32390212	32390234	32390212	+	RAMPAGE_only	2	3	9	0.307075	2.500000	chr6	32390160	32390304	LINE|L2|L2a	-	chr6	32387177	32390775	HCG23|ENST00000644884.1	+	32387177,32390213	32387724,32390775	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	51814591	51814767	51814766	+	RAMPAGE_only	11	12	91	3.104874	5.075041	chr15	51814656	51814779	SINE|MIR|MIR3	+	chr15	51751560	51816368	TMOD2|ENST00000249700.8	+	51751560,51766372,51768261,51773711,51776931,51781043,51782720,51798196,51806376,51808419	51751712,51766567,51768418,51773834,51777018,51781174,51782828,51798340,51806521,51816368	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	14308255	14308287	14308255	-	High_confidence	3	3	13	0.443553	3.546594	chr9	14308197	14308311	SINE|MIR|MIR1_Amn	-	chr9	14087628	14308073	NFIB|ENST00000636057.1	-	14087628,14120439,14125631,14146688,14150144,14155824,14179726,14306988,14307919	14088326,14120624,14125766,14146807,14150265,14155893,14179780,14307520,14308073	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	222715266	222715267	222715266	+	RAMPAGE_only	8	8	9	0.307075	2.500000	chr1	222715165	222715305	DNA|hAT-Charlie|MER5A1	+	chr1	222713400	222727209	BROX|ENST00000489191.1	+	222713400,222715144,222718924,222719262,222724091,222725449,222727167	222713416,222715269,222719031,222719359,222724164,222725555,222727209	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	166850052	166850091	166850061	+	RAMPAGE_only	3	3	17	0.580031	3.454822	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	41871799	41871833	41871799	-	RAMPAGE_only	5	5	21	0.716509	4.201841	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.619048
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	18395180	18395181	18395180	+	RAMPAGE_only	7	7	7	0.238836	2.521641	chr7	18395143	18395371	SINE|MIR|MIRc	+	chr7	18495709	18668843	HDAC9|NM_014707.3	+	18495709,18496261,18585280,18590344,18591515,18593907,18629349,18634626,18644670,18647784,18648465,18666212	18495854,18496324,18585522,18590486,18591642,18594029,18629481,18634742,18644793,18647998,18648683,18668843	0.714286
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	84727319	84727329	84727319	-	RAMPAGE_only	6	6	12	0.409434	3.188722	chr11	84726115	84729578	LINE|L1|L1PA7	-	chr11	83457918	84923137	MSTRG.4400.4	-	83457918,83462001,83466707,83469200,83471625,83472726,83484128,83532707,83541681,83633210,83786689,83833613,83874419,83930327,83962884,83965323,83980505,84059314,84098922,84163460,84251237,84534569,84720295,84823609,84844113,84859527,84908928	83459924,83462093,83466817,83469373,83471727,83472777,83484228,83532783,83541858,83633325,83786792,83833770,83874488,83930483,83963023,83965468,83980642,84059484,84099047,84163511,84251291,84534731,84823581,84844065,84859238,84908766,84923137	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	643625	643648	643635	-	High_confidence	9	9	39	1.330660	4.303784	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.564103
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	12522775	12522814	12522810	+	RAMPAGE_only	9	9	45	1.535377	4.175696	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.866667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	50766308	50766309	50766308	-	High_confidence	4	4	6	0.204717	2.584963	chr14	50766057	50766321	SINE|MIR|MIR	-	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	212386270	212386285	212386270	-	RAMPAGE_only	3	3	12	0.409434	3.459432	chr2	212386179	212386331	LINE|L2|L2c	+	chr2	212267922	212538529	MSTRG.14627.11	-	212267922,212391649,212426361	212391609,212426275,212538529	0.916667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	78388844	78388896	78388895	+	RAMPAGE_only	4	4	13	0.443553	3.251629	chr5	78388798	78388903	LINE|CR1|L3	-	chr5	78360610	78476026	SCAMP1|ENST00000618166.4	+	78360610,78415519,78416540,78418774,78421800,78449932,78459244,78475503	78360728,78415618,78416649,78418903,78421960,78450034,78459362,78476026	0.846154
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	72363556	72363567	72363556	-	High_confidence	5	5	15	0.511792	3.521641	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.733333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	20658312	20658427	20658338	+	High_confidence	27	28	180	6.141510	5.135173	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	1241361	1241362	1241361	-	RAMPAGE_only	7	8	9	0.307075	2.500000	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1248740	CTBP1|ENST00000513420.1	-	1225437,1228198,1238182,1241324,1248660	1225566,1228343,1238337,1241519,1248740	0.666667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	103274492	103274535	103274529	-	RAMPAGE_only	2	2	11	0.375314	3.121928	chr7	103274079	103275487	LTR|ERV1|LTR12C	-	chr7	103175132	103280219	DPY19L2P2|ENST00000439473.5	-	103175132,103184001,103185437,103195439,103197186,103198594,103210266,103212160,103214000,103216462,103225104,103233799,103234648,103237755,103238802,103240561,103242988,103254781,103257603,103271731,103274069,103277613,103279832	103175411,103184127,103185537,103195614,103197306,103198619,103210313,103212232,103214102,103216543,103225164,103233886,103234726,103237855,103238871,103240653,103243046,103254875,103257724,103271869,103275627,103277638,103280219	0.545455
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	177314936	177314952	177314936	-	High_confidence	3	3	10	0.341195	3.121928	chr2	177314867	177315028	DNA|hAT-Charlie|MER5A1	+	chr2	177231804	177314937	NFE2L2|ENST00000586532.5	-	177231804,177232391,177233249,177234004,177310963,177311232,177314916	177232008,177232583,177233339,177234271,177311035,177311328,177314937	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	70020995	70021015	70021014	+	RAMPAGE_only	5	5	9	0.307075	3.000000	chr1	70021050	70021195	DNA|hAT-Ac|OldhAT1	+	chr1	69568449	70144364	MSTRG.992.4	+	69568449,69678380,69760190,69792042,69825747,69834779,69838226,69931506,69980378,69986241,69994560,70011796,70012973,70016464,70018718,70021004,70038112,70053025,70076076,70089726,70107751,70121779,70128537,70130127,70138109,70142196	69568641,69678478,69760393,69792160,69825826,69834869,69838283,69931570,69980453,69986386,69994633,70011926,70013089,70016534,70018818,70036624,70039793,70053145,70076298,70089819,70107826,70121870,70128795,70130256,70138284,70144364	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	127653719	127653797	127653785	+	RAMPAGE_only	5	5	28	0.955346	4.137538	chr9	127653827	127654016	LINE|L2|L2b	+	chr9	127651623	127684513	STXBP1|ENST00000647107.1	+	127651623,127653714,127658374,127660029,127661101,127663204,127665246,127666165,127668079,127669897,127672050,127673180,127675803,127676643,127678430,127680156,127682405,127683917,127684367	127651652,127653796,127658451,127660108,127661205,127663353,127665331,127666296,127668187,127669958,127672116,127673261,127675942,127676753,127678532,127680242,127682560,127683970,127684513	0.678571
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	100011506	100011551	100011520	-	RAMPAGE_only	12	14	58	1.978931	5.149026	chr2	100011412	100011657	DNA|hAT-Tip100|MamTip2	+	chr2	100006148	100007951	AFF3|ENST00000498090.1	-	100006148,100007147	100007017,100007951	0.982759
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	86780458	86780459	86780458	+	RAMPAGE_only	5	6	8	0.272956	2.521641	chr4	86780459	86780984	LINE|L1|L1ME1	+	chr4	86635251	86815149	PTPN13|ENST00000511467.1	+	86635251,86672364,86686709,86689004,86693586,86701240,86716529,86717023,86722211,86732399,86732591,86734302,86734736,86735593,86741633,86744965,86750469,86751026,86753008,86758259,86758677,86758941,86762726,86764592,86765394,86766431,86767816,86769768,86770100,86771170,86772777,86774372,86775170,86775441,86780401,86782200,86784464,86785230,86785847,86796873,86799100,86803708,86805278,86807559,86809768,86811045,86814455	86635371,86672543,86686775,86689190,86693674,86701801,86716625,86717117,86722434,86732474,86732766,86734456,86734875,86735746,86741816,86745128,86750887,86751124,86753065,86758349,86758785,86759073,86763190,86764739,86765488,86766517,86767976,86769983,86770199,86771535,86772958,86774531,86775342,86775652,86780472,86782262,86784558,86785368,86785936,86796929,86799204,86803857,86805369,86807897,86809984,86811108,86815149	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	108767934	108767935	108767934	+	High_confidence	4	4	7	0.238836	2.807355	chr11	108767811	108768278	DNA|TcMar-Tigger|Tigger2	+	chr11	108767313	108841476	DDX10|ENST00000534439.5	+	108767313,108767936,108838445,108841314	108767404,108768001,108838565,108841476	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	3795740	3795781	3795771	+	High_confidence	6	6	52	1.774214	4.774887	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.980769
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	149218624	149218641	149218624	+	High_confidence	3	3	10	0.341195	2.947703	chr6	149218600	149218675	SINE|MIR|MIR3	-	chr6	149218697	149244072	AL031056.1|ENST00000445901.1	+	149218697,149243728	149218776,149244072	0.600000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	159428332	159428417	159428356	-	RAMPAGE_only	7	9	58	1.978931	5.258243	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159385164	159419867	MSTRG.14215.9	-	159385164,159389344,159395768,159397073,159397344,159400598,159404848,159405021,159412334,159419779	159386607,159389485,159395834,159397100,159397389,159400664,159404910,159405114,159412545,159419867	0.913793
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	98892934	98892935	98892934	-	RAMPAGE_only	8	8	11	0.375314	3.095795	chr1	98892802	98892934	LINE|L2|L2b	-	chr1	98890244	99004893	PLPPR5|NM_001037317.1	-	98890244,98914785,98921881,98953069,98956608,99004434	98893104,98914920,98922058,98953320,98956741,99004893	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	98807548	98807582	98807548	-	High_confidence	3	3	27	0.921226	4.504706	chr9	98807400	98807537	SINE|MIR|MIRb	-	chr9	98798465	98807564	AL807776.1|ENST00000647710.1	-	98798465,98806770	98799609,98807564	0.962963
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	31587007	31587014	31587009	+	High_confidence	6	13	24	0.818868	3.823068	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.833333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	48683361	48683363	48683362	+	High_confidence	7	13	13	0.443553	2.855389	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.923077
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	60205797	60205818	60205797	-	RAMPAGE_only	4	4	20	0.682390	3.884184	chr10	60205553	60205752	SINE|tRNA-RTE|MamSINE1	-	chr10	60026297	60389730	ANK3|ENST00000280772.6	-	60026297,60042671,60055657,60059339,60063110,60064156,60067934,60068636,60080536,60082149,60082614,60083491,60084601,60085156,60086676,60088146,60105904,60108829,60114224,60134270,60138963,60166590,60166823,60172307,60172899,60173087,60181328,60186714,60196144,60196526,60198339,60200128,60203001,60205791,60208035,60213411,60234687,60261858,60263834,60270130,60278773,60279049,60279537,60389424	60029826,60042759,60056036,60059430,60063254,60064288,60068009,60076448,60080618,60082176,60082737,60083617,60084830,60085253,60086884,60088358,60106059,60109054,60114331,60134373,60139087,60166653,60166896,60172403,60172998,60173186,60181427,60186912,60196243,60196625,60198537,60200227,60203100,60205890,60208233,60213510,60234786,60261957,60264020,60270229,60278872,60279148,60279639,60389730	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	80634640	80634700	80634640	-	RAMPAGE_only	3	3	28	0.955346	2.750972	chr8	80634474	80634795	DNA|hAT-Charlie|MER102b	+	chr8	80628450	80659664	MSTRG.23045.2	-	80628450,80637080,80643034,80659584	80637056,80641477,80643129,80659664	0.964286
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	49789498	49789565	49789498	-	RAMPAGE_only	3	3	18	0.614151	3.690117	chr14	49789398	49789451	LINE|L2|L2a	-	chr14	49784904	49787174	NEMF|ENST00000554275.1	-	49784904,49786717	49785320,49787174	0.666667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	112227198	112227213	112227198	+	High_confidence	3	3	17	0.580031	3.750000	chr11	112227196	112227258	SINE|MIR|MIR	+	chr11	112226431	112233810	PTS|ENST00000525803.1	+	112226431,112228593,112233162,112233431	112226526,112228673,112233233,112233810	0.823529
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	200857745	200857777	200857745	-	High_confidence	3	3	11	0.375314	2.921928	chr2	200857615	200857696	LINE|L1|L1MA8	-	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.909091
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	179325251	179325273	179325272	+	High_confidence	7	8	14	0.477673	3.546594	chr3	179325011	179325319	SINE|Alu|AluSp	-	chr3	179325152	179333829	ZNF639|ENST00000466264.5	+	179325152,179327560,179328282,179329617,179332988,179333268	179325322,179327631,179328351,179329728,179333123,179333829	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	52615399	52615424	52615423	-	High_confidence	5	5	14	0.477673	2.610577	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	65577132	65577183	65577143	+	RAMPAGE_only	19	21	52	1.774214	4.743239	chr15	65577153	65577426	SINE|Alu|AluJr	+	chr15	65530488	65578355	HACD3|NM_016395.2	+	65530488,65551675,65554886,65556738,65558679,65562773,65564214,65570090,65571547,65572234,65576302	65530718,65551718,65554960,65556903,65558731,65562884,65564342,65570203,65571654,65572366,65578355	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	75945238	75945259	75945238	+	RAMPAGE_only	2	2	8	0.272956	2.807355	chr3	75945081	75945496	LINE|L2|L2a	-	chr3	75906801	76149036	MSTRG.16917.3	+	75906801,75937480,76073406	75906960,76073251,76149036	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	47743693	47743728	47743727	+	High_confidence	11	17	65	2.217767	5.660679	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.569231
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	40062431	40062470	40062469	+	High_confidence	3	3	14	0.477673	2.950212	chr17	40062342	40062502	SINE|MIR|MIR3	-	chr17	40062192	40093613	THRA|ENST00000394121.8	+	40062192,40074191,40076870,40077507,40083834,40084609,40086706,40088241,40089205,40093019	40062451,40074541,40076938,40077608,40083982,40084815,40086853,40088500,40089333,40093613	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	65722882	65722919	65722882	-	High_confidence	3	3	13	0.443553	3.392747	chr5	65722781	65722883	DNA|hAT-Ac|OldhAT1	-	chr5	65680687	65723035	SGTB|ENST00000506816.1	-	65680687,65685367,65704278,65708488,65712960,65720707,65722756	65680794,65685472,65704378,65708558,65713064,65720829,65723035	0.615385
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	240022181	240022280	240022181	-	RAMPAGE_only	8	9	71	2.422484	3.627120	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.985915
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	104506287	104506337	104506287	+	RAMPAGE_only	3	4	18	0.614151	3.836592	chr2	104506225	104506290	SINE|MIR|MIRb	-	chr2	104434377	104512757	LINC01102|ENST00000447380.1	+	104434377,104505865,104507231,104512042	104434523,104506303,104507406,104512757	0.555556
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	106097587	106097805	106097656	+	RAMPAGE_only	8	8	111	3.787264	3.302945	chr11	106097547	106097741	LTR|ERVL-MaLR|MLT1L	-	chr11	106091466	106098699	AASDHPPT|ENST00000534152.1	+	106091466,106096742	106094654,106098699	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	73513459	73513469	73513468	+	High_confidence	3	3	7	0.238836	2.584963	chr17	73512579	73514063	LINE|L1|L1ME4b	+	chr17	73513468	73518763	AC124804.1|ENST00000650299.1	+	73513468,73516603	73513790,73518763	0.714286
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	129904501	129904538	129904522	-	RAMPAGE_only	6	6	18	0.614151	3.499228	chr8	129904249	129904641	LTR|ERVL|LTR16E2	+	chr8	129849291	129903351	FAM49B|ENST00000639004.1	-	129849291,129849326,129850834,129852161,129854265,129855610,129855674,129862228,129862262,129871374,129879388,129903311	129849324,129849369,129850914,129852278,129854343,129855673,129855747,129862260,129862335,129871496,129879471,129903351	0.833333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	24580612	24580623	24580612	+	High_confidence	7	9	18	0.614151	4.169925	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.666667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	95509593	95509595	95509594	-	RAMPAGE_only	7	10	12	0.409434	3.027169	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	0.916667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	168550138	168550161	168550138	-	RAMPAGE_only	12	12	27	0.921226	4.209867	chr5	168550033	168550400	DNA|TcMar-Tigger|MER47A	+	chr5	168548494	168579600	PANK3|ENST00000239231.6	-	168548494,168559031,168561392,168563888,168566012,168568645,168579255	168557621,168559157,168561516,168564065,168566266,168568998,168579600	0.962963
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	44887698	44887729	44887728	+	RAMPAGE_only	3	3	10	0.341195	2.721928	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885739	44901833	YWHAB|ENST00000428262.1	+	44885739,44887544,44901530	44885886,44887742,44901833	0.600000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	77278758	77278810	77278758	-	RAMPAGE_only	4	5	19	0.648270	3.836592	chr13	77278539	77278721	LINE|L1|L1MA7	-	chr13	77270030	77273511	MYCBP2|ENST00000474882.2	-	77270030,77270295,77272322,77273471	77270063,77270538,77272399,77273511	0.631579
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	13419568	13419730	13419689	-	RAMPAGE_only	9	10	95	3.241352	5.638636	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.673684
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	54759973	54759974	54759973	-	High_confidence	22	25	25	0.852987	3.438722	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.920000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	55280217	55280236	55280217	-	High_confidence	6	8	15	0.511792	3.093069	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.933333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	113773685	113773692	113773685	-	High_confidence	11	12	18	0.614151	3.852169	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113744576	113773683	LINC01234|NR_110026.1	-	113744576,113767074,113773614	113746595,113767208,113773683	0.833333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	50226714	50226728	50226714	+	High_confidence	43	44	107	3.650786	5.572471	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	0.943925
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	103919501	103919534	103919510	-	High_confidence	6	6	38	1.296541	4.831075	chrX	103919452	103919627	SINE|MIR|MIRb	-	chrX	103917410	103919548	TMSB15B-AS1|ENST00000614615.1	-	103917410,103918408,103918831,103919424	103918225,103918460,103919080,103919548	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	40827903	40827952	40827921	-	RAMPAGE_only	12	15	34	1.160063	4.690117	chr5	40827732	40827894	SINE|Alu|AluSx	-	chr5	40825261	40829142	LOC100506548|NR_037665.1	-	40825261	40829142	0.970588
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	199397629	199397654	199397629	-	RAMPAGE_only	3	3	7	0.238836	2.584963	chr2	199397606	199397893	SINE|Alu|AluSz	+	chr2	199368609	199423915	SATB2|ENST00000484124.1	-	199368609,199380363,199381693,199423685	199368707,199380487,199381820,199423915	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	236604753	236604821	236604820	-	High_confidence	3	3	16	0.545912	3.327820	chr1	236604803	236604947	SINE|MIR|MIRb	+	chr1	236549004	236604541	HEATR1|NM_018072.5	-	236549004,236551998,236553580,236554597,236555295,236555550,236555804,236556099,236557194,236558236,236558994,236559713,236561224,236564497,236565918,236566645,236568995,236571350,236571567,236572410,236572724,236574201,236574660,236576218,236576779,236581221,236582735,236583012,236585024,236585819,236586240,236587401,236587947,236590846,236591992,236592522,236594011,236595539,236595832,236596835,236597877,236599482,236603159,236603953,236604421	236550990,236552107,236553739,236554752,236555464,236555655,236555939,236556258,236557345,236558529,236559135,236559837,236561271,236564661,236566045,236566876,236569124,236571472,236571686,236572554,236572828,236574333,236574903,236576377,236576949,236581414,236582872,236583196,236585216,236585941,236586452,236587490,236588043,236590954,236592110,236592633,236594114,236595673,236596044,236596976,236597979,236599624,236603376,236604127,236604541	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	51814394	51814411	51814400	+	RAMPAGE_only	9	14	36	1.228302	4.461320	chr15	51814446	51814570	LINE|L2|L2c	+	chr15	51751560	51816368	TMOD2|ENST00000249700.8	+	51751560,51766372,51768261,51773711,51776931,51781043,51782720,51798196,51806376,51808419	51751712,51766567,51768418,51773834,51777018,51781174,51782828,51798340,51806521,51816368	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	58306091	58306128	58306091	+	High_confidence	2	2	11	0.375314	3.095795	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305373	58315202	ERVK3-1|ENST00000427361.5	+	58305373,58306087,58312196,58314747	58305445,58306216,58312462,58315202	0.727273
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	57568021	57568059	57568041	-	High_confidence	11	17	54	1.842453	4.914347	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551661	57567807	UBE2L6|ENST00000287156.8	-	57551661,57554436,57560336,57567584	57552509,57554623,57560432,57567807	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	57571331	57571365	57571350	+	RAMPAGE_only	6	6	26	0.887107	3.909275	chr12	57571268	57571350	LINE|Penelope|Penelope1_Vert	-	chr12	57550063	57584771	KIF5A|NM_004984.2	+	57550063,57563438,57563619,57564107,57564459,57564917,57567125,57567493,57568962,57569255,57569534,57569986,57571320,57572060,57572579,57575083,57575639,57576086,57576268,57576760,57577712,57578008,57578237,57580955,57581414,57581869,57582601,57583100,57584217	57550400,57563526,57563693,57564212,57564508,57564973,57567213,57567618,57569067,57569404,57569683,57570162,57571389,57572267,57572726,57575272,57575757,57576151,57576378,57576862,57577773,57578080,57578342,57581172,57581568,57581952,57582629,57583215,57584771	0.961538
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	4355592	4355593	4355592	-	High_confidence	160	162	163	5.561478	4.334549	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.981595
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	97437259	97437326	97437271	-	High_confidence	20	21	83	2.831918	5.947211	chr9	97437089	97437627	LTR|ERVL-MaLR|MLT1F2	-	chr9	97402304	97437685	MSTRG.24028.1	-	97402304,97437162	97404790,97437685	0.614458
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	79631254	79631303	79631302	+	High_confidence	83	84	528	18.015095	6.267566	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.926136
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	176003053	176003062	176003061	-	High_confidence	5	5	12	0.409434	3.022055	chr4	176003011	176003179	SINE|MIR|MIR3	+	chr4	175632936	176002691	GPM6A|NM_005277.4	-	175632936,175640128,175640752,175651833,175673679,175701574,175812190,176002308	175635057,175640194,175640829,175651987,175673836,175701767,175812249,176002691	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	33031619	33031620	33031619	-	RAMPAGE_only	10	10	10	0.341195	3.121928	chr1	33031545	33031766	SINE|MIR|MIRb	+	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	57641613	57641635	57641613	+	High_confidence	2	2	8	0.272956	2.521641	chr16	57641565	57641864	SINE|Alu|AluSz6	-	chr16	57640964	57651468	ADGRG1|ENST00000563414.5	+	57640964,57641590,57650252,57651199	57641064,57641708,57650351,57651468	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	73712908	73712947	73712908	-	RAMPAGE_only	3	3	16	0.545912	3.589898	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	0.937500
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	100364571	100364604	100364603	-	RAMPAGE_only	2	2	8	0.272956	2.521641	chr3	100364559	100364701	SINE|Alu|FAM	-	chr3	100363430	100401398	TOMM70|ENST00000284320.5	-	100363430,100368043,100369037,100372605,100373537,100375017,100377704,100381614,100384478,100386217,100386804,100400625	100365717,100368166,100369135,100372722,100373645,100375152,100377912,100381763,100384588,100386344,100386978,100401398	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	98891290	98891329	98891328	-	RAMPAGE_only	3	3	11	0.375314	2.921928	chr4	98891322	98891802	LINE|L1|L1MB2	+	chr4	98878455	98929092	EIF4E|NM_001130678.1	-	98878455,98884921,98887078,98887888,98891236,98901875,98928894	98881142,98885061,98887192,98887952,98891332,98901982,98929092	0.727273
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	24158672	24158717	24158716	-	High_confidence	8	8	28	0.955346	4.521641	chr11	24154855	24160018	LINE|L1|L1PA16	+	chr11	24074068	24158842	MSTRG.3781.1	-	24074068,24139862,24158369	24119123,24139939,24158842	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	72363485	72363524	72363506	-	High_confidence	5	5	28	0.955346	3.732308	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	112332567	112332573	112332572	+	High_confidence	17	17	26	0.887107	4.180833	chr3	112332311	112332606	SINE|Alu|AluY	+	chr3	112332840	112335996	CD200|ENST00000607516.1	+	112332840,112335825	112333224,112335996	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	102261146	102261184	102261146	-	High_confidence	4	5	14	0.477673	3.392747	chr8	102261109	102261291	DNA|hAT-Ac|OldhAT1	+	chr8	102253945	102261986	UBR5|ENST00000517465.1	-	102253945,102257631,102258315,102258984,102261145,102261914	102254514,102257717,102258424,102259129,102261259,102261986	0.928571
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	12802523	12802539	12802538	-	High_confidence	4	4	8	0.272956	2.807355	chr18	12802496	12804008	LINE|L1|L1MA6	+	chr18	12785480	12802153	PTPN2|ENST00000591901.5	-	12785480,12793481,12794383,12801969	12785844,12793574,12794485,12802153	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	72305913	72305914	72305913	-	High_confidence	22	30	32	1.091824	4.215061	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	0.937500
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	17568245	17568600	17568403	+	RAMPAGE_only	88	97	666	22.723585	3.720008	chr21	17568125	17568427	SINE|Alu|AluY	-	chr21	17512905	17570111	CXADR|NM_001338.4	+	17512905,17547026,17551748,17558975,17560701,17561337,17565427	17513172,17547193,17551953,17559131,17560824,17561476,17570111	0.989489
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	17692225	17692264	17692225	-	High_confidence	3	3	15	0.511792	3.807355	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.600000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	243574822	243574823	243574822	-	RAMPAGE_only	4	4	7	0.238836	2.521641	chr1	243574791	243575029	LINE|RTE-X|L4_B_Mam	+	chr1	243488232	243843236	AKT3|ENST00000336199.9	-	243488232,243499736,243512323,243545509,243552728,243563719,243572925,243613670,243615095,243637610,243645892,243664771,243695590,243843124	243488450,243499786,243512426,243545597,243552943,243563848,243573048,243613739,243615161,243637742,243646037,243664883,243695716,243843236	0.714286
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	76445409	76445410	76445409	-	High_confidence	7	7	7	0.238836	2.807355	chr2	76445391	76445484	LTR|ERV1|MER66B	+	chr2	76445078	76445410	RN7SKP203|ENST00000363618.1	-	76445078	76445410	0.714286
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	24011756	24011757	24011756	+	High_confidence	11	11	11	0.375314	2.913977	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	84898779	84898845	84898812	-	RAMPAGE_only	9	10	60	2.047170	5.258243	chr11	84898649	84899055	LINE|L2|L2c	+	chr11	83457918	84923137	MSTRG.4400.4	-	83457918,83462001,83466707,83469200,83471625,83472726,83484128,83532707,83541681,83633210,83786689,83833613,83874419,83930327,83962884,83965323,83980505,84059314,84098922,84163460,84251237,84534569,84720295,84823609,84844113,84859527,84908928	83459924,83462093,83466817,83469373,83471727,83472777,83484228,83532783,83541858,83633325,83786792,83833770,83874488,83930483,83963023,83965468,83980642,84059484,84099047,84163511,84251291,84534731,84823581,84844065,84859238,84908766,84923137	0.950000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	176617412	176617436	176617435	-	RAMPAGE_only	7	7	31	1.057704	4.171465	chr5	176617331	176617629	SINE|Alu|AluYm1	-	chr5	176595801	176610133	GPRIN1|ENST00000303991.4	-	176595801,176609998	176599877,176610133	0.870968
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	3062922	3062983	3062922	-	High_confidence	33	39	138	4.708491	5.742744	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.992754
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	53211528	53211532	53211528	-	High_confidence	2	2	7	0.238836	2.521641	chrX	53211312	53211478	SINE|MIR|MIRb	-	chrX	53198489	53211658	KDM5C|ENST00000497100.5	-	53198489,53198976,53201549,53201853,53210413,53210675,53211496	53198888,53199158,53201744,53201973,53210576,53210857,53211658	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	18445929	18445943	18445929	-	RAMPAGE_only	2	2	6	0.204717	2.584963	chr12	18445268	18446036	LINE|L1|L1ME4b	+	chr12	18081363	18320107	RERGL|ENST00000541632.1	-	18081363,18084516,18085619,18088899,18140791,18143183,18285304,18320055	18081473,18084665,18085693,18088956,18140873,18143293,18285401,18320107	0.833333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	75946139	75946448	75946447	+	RAMPAGE_only	13	13	163	5.561478	5.731775	chr3	75946328	75947346	LINE|L2|L2b	-	chr3	75906801	76149036	MSTRG.16917.3	+	75906801,75937480,76073406	75906960,76073251,76149036	0.981595
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	88147770	88147787	88147770	-	RAMPAGE_only	2	2	8	0.272956	2.521641	chr6	88147611	88147801	LINE|L2|L2c	+	chr6	88143243	88145365	CNR1|ENST00000549890.1	-	88143243	88145365	0.625000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	75626279	75626305	75626304	-	High_confidence	7	7	16	0.545912	3.077820	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	54243244	54243277	54243244	-	RAMPAGE_only	3	3	10	0.341195	3.169925	chr1	54243091	54243229	SINE|MIR|MIR3	-	chr1	54226516	54228834	SSBP3|ENST00000528930.5	-	54226516,54228254,54228448,54228747	54227160,54228356,54228477,54228834	0.700000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	147173173	147173190	147173173	+	High_confidence	3	3	9	0.307075	2.500000	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	52661530	52661561	52661530	+	RAMPAGE_only	3	3	11	0.375314	2.913977	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	55906250	55906272	55906250	+	RAMPAGE_only	2	2	7	0.238836	2.521641	chr7	55906118	55906259	LTR|ERV1|LTR23	+	chr7	55887536	55942530	ZNF713|ENST00000411863.2	+	55887536,55906252,55911615,55912634,55918041,55923161,55923606,55938981,55941391	55887680,55906379,55912068,55912723,55918297,55923288,55923699,55940173,55942530	0.714286
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	129256120	129256146	129256145	+	RAMPAGE_only	6	6	14	0.477673	2.950212	chr3	129256170	129256401	DNA|hAT|MamRep38	+	chr3	129260226	129265675	COPG1|ENST00000504547.1	+	129260226,129260618,129263903,129265548	129260400,129260807,129263999,129265675	0.642857
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	23951343	23951372	23951355	+	High_confidence	4	5	19	0.648270	3.614369	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.578947
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	107580197	107580229	107580202	-	High_confidence	4	4	17	0.580031	3.616875	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107579556	107580057	AC004839.1|ENST00000610269.1	-	107579556	107580057	0.764706
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	61811820	61811821	61811820	-	High_confidence	7	7	7	0.238836	2.521641	chr11	61811607	61811887	SINE|Alu|AluSx1	-	chr11	61803425	61810885	FADS1|ENST00000539999.1	-	61803425,61803669,61804684,61806663,61810750	61803459,61803767,61804761,61806724,61810885	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	125497341	125497361	125497354	-	RAMPAGE_only	4	4	13	0.443553	3.022055	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	0.923077
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	11201309	11201319	11201309	-	RAMPAGE_only	2	2	8	0.272956	2.807355	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	69425670	69425700	69425691	+	High_confidence	13	22	68	2.320126	4.407608	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425689	69429621	AP000439.3|ENST00000545202.1	+	69425689,69427362	69425806,69429621	0.970588
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	20584426	20584465	20584464	-	RAMPAGE_only	7	8	19	0.648270	3.892407	chr9	20582895	20584443	LTR|ERVL-MaLR|THE1A-int	-	chr9	20547393	20621873	MSTRG.23615.15	-	20547393,20570688,20621772	20570613,20620834,20621873	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	135548339	135548351	135548350	+	RAMPAGE_only	11	12	33	1.125943	4.750000	chr8	135548149	135548560	LINE|L2|L2a	-	chr8	135542702	135647026	KHDRBS3|ENST00000524282.1	+	135542702,135548753,135557447,135581877,135646992	135542770,135548900,135557587,135582073,135647026	0.666667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	54448846	54448847	54448846	-	High_confidence	9	10	11	0.375314	3.121928	chr19	54448651	54448966	SINE|Alu|AluSg	+	chr19	54445035	54448602	LENG8-AS1|ENST00000416022.1	-	54445035,54448164	54445179,54448602	0.636364
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	8384046	8384068	8384049	-	High_confidence	6	6	28	0.955346	4.384517	chr17	8384033	8384050	SINE|Alu|AluSq	-	chr17	8377515	8383250	RPL26|ENST00000293842.10	-	8377515,8379795,8382142,8383156	8377692,8379936,8382315,8383250	0.678571
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	94435396	94435397	94435396	-	RAMPAGE_only	8	8	9	0.307075	3.000000	chr12	94435233	94435447	LTR|ERV1|MER39	+	chr12	94308285	94412595	CEP83|ENST00000397807.6	-	94308285,94309917,94312913,94312930,94331699,94333481,94335588,94367793,94368056,94369921,94375885,94378790,94400849,94403169,94411696,94412317	94308917,94310107,94312929,94313017,94331829,94333639,94335664,94367943,94368201,94370036,94376017,94379042,94400981,94403262,94411847,94412595	0.666667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	143248143	143248178	143248158	+	RAMPAGE_only	22	27	72	2.456604	5.576107	chr2	143247953	143248400	LINE|L2|L2a	-	chr2	143129329	143768352	ARHGAP15|NM_018460.3	+	143129329,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.819444
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	98943562	98943578	98943575	+	High_confidence	4	6	15	0.511792	3.506891	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	75336496	75336518	75336496	+	High_confidence	4	7	13	0.443553	2.777363	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.769231
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	107659843	107659844	107659843	-	RAMPAGE_only	4	4	7	0.238836	2.584963	chr7	107659761	107659871	DNA|hAT-Charlie|Charlie4z	-	chr7	107656515	107661798	SLC26A4-AS1|NR_028137.1	-	107656515,107661601	107660206,107661798	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	57279846	57279865	57279864	+	High_confidence	4	4	8	0.272956	2.521641	chr19	57279571	57279886	LINE|L2|L2a	+	chr19	57280050	57292534	ZNF460|ENST00000537645.5	+	57280050,57284550,57290698	57280124,57284677,57292534	0.750000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	62598052	62598072	62598052	-	RAMPAGE_only	4	5	12	0.409434	3.277613	chr11	62597909	62598004	DNA|hAT-Tip100|MER91C	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.833333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	91179462	91179562	91179462	-	High_confidence	17	17	138	4.708491	6.243610	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.884058
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	72355145	72355169	72355145	-	High_confidence	14	14	38	1.296541	4.551462	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.868421
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	102529113	102529155	102529113	+	High_confidence	97	98	180	6.141510	5.591157	chr8	102529132	102529267	SINE|Alu|FLAM_C	+	chr8	102528754	102529801	AP002852.1|ENST00000523572.1	+	102528754,102529310	102528855,102529801	0.955556
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	70997072	70997085	70997084	+	RAMPAGE_only	28	32	52	1.774214	3.897852	chr15	70996812	70997468	LINE|L1|L1M4	-	chr15	70980098	71009978	LRRC49|ENST00000559422.1	+	70980098,70984093,71008378,71009577,71009806	70980184,70984257,71008616,71009644,71009978	0.807692
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	75946730	75946764	75946730	+	RAMPAGE_only	7	7	22	0.750629	3.921928	chr3	75946328	75947346	LINE|L2|L2b	-	chr3	75906801	76149036	MSTRG.16917.3	+	75906801,75937480,76073406	75906960,76073251,76149036	0.909091
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	32075879	32075899	32075879	+	High_confidence	6	6	17	0.580031	3.690117	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076113	32090780	ARHGAP5|ENST00000555814.1	+	32076113,32076457,32090501	32076217,32076657,32090780	0.647059
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	138557269	138557287	138557286	-	High_confidence	4	5	8	0.272956	2.521641	chr5	138557194	138557264	SINE|Alu|AluSx3	-	chr5	138555826	138557891	HSPA9|ENST00000524109.1	-	138555826,138556451,138556773,138557868	138556114,138556592,138557496,138557891	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	61482964	61482965	61482964	-	RAMPAGE_only	5	5	8	0.272956	2.500000	chr2	61482597	61482921	SINE|Alu|AluSx3	-	chr2	61477934	61494743	XPO1|ENST00000481073.5	-	61477934,61481184,61482379,61482956,61483936,61485767,61488164,61488587,61490641,61492034,61492324,61492566,61492914,61493893	61478966,61481281,61482539,61483091,61484105,61485962,61488271,61488771,61490776,61492198,61492481,61492748,61493053,61494743	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	88585856	88585867	88585866	-	RAMPAGE_only	4	4	9	0.307075	2.725481	chr2	88585579	88585828	LINE|L2|L2-3_Crp	-	chr2	88575382	88579969	EIF2AK3|ENST00000478003.1	-	88575382,88576553,88579517	88575446,88576703,88579969	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	39297543	39297606	39297543	-	RAMPAGE_only	6	6	23	0.784748	4.243300	chr21	39297418	39297842	LINE|RTE-BovB|MamRTE1	+	chr21	39296436	39313570	MSTRG.15668.16	-	39296436,39312840,39313071,39313442	39298582,39312900,39313299,39313570	0.956522
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	37084035	37084068	37084067	+	High_confidence	3	3	9	0.307075	2.500000	chr21	37083879	37084118	DNA|hAT-Charlie|MER113B	+	chr21	37083625	37093402	TTC3|ENST00000484047.5	+	37083625,37087246,37087832,37088798,37090232,37091292,37093308	37084331,37087401,37088346,37088886,37090286,37091626,37093402	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	6918655	6918680	6918679	-	High_confidence	4	4	13	0.443553	3.418296	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.769231
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	37465441	37465463	37465441	-	RAMPAGE_only	3	3	9	0.307075	2.500000	chr19	37464765	37465454	LINE|L2|L2a	+	chr19	37411154	37467229	ZNF569|ENST00000392149.6	-	37411154,37425867,37426251,37444906,37467086	37414419,37425963,37426378,37444964,37467229	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	58312198	58312224	58312223	+	RAMPAGE_only	2	2	8	0.272956	2.807355	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	62600181	62600187	62600181	-	High_confidence	3	3	7	0.238836	2.584963	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	140700445	140700452	140700445	+	High_confidence	2723	3579	6737	229.863056	4.885990	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.975954
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	50016120	50016149	50016148	-	RAMPAGE_only	2	2	6	0.204717	2.584963	chr19	50016092	50016166	DNA|hAT-Ac|OldhAT1	-	chr19	49994862	50020647	VRK3|ENST00000599342.5	-	49994862,50000789,50007568,50009235,50015731,50016023,50020584	49994919,50000854,50007826,50009385,50015793,50016163,50020647	0.833333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	38687194	38687195	38687194	-	RAMPAGE_only	8	8	10	0.341195	2.947703	chr22	38687038	38687336	SINE|Alu|AluSp	+	chr22	38685542	38700454	JOSD1|NM_014876.5	-	38685542,38688934,38689295,38699802	38688001,38689129,38689424,38700454	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	151669678	151669726	151669678	-	RAMPAGE_only	4	4	33	1.125943	3.861984	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	99	99	99	3.377830	4.196376	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	12516309	12516328	12516314	-	High_confidence	8	8	26	0.887107	4.213661	chr18	12516214	12516349	LTR|ERVL-MaLR|MLT1K	+	chr18	12493138	12516225	SPIRE1|ENST00000487491.1	-	12493138,12496015,12506476,12512453,12516070	12493201,12496102,12506641,12512531,12516225	0.884615
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	16737782	16737788	16737787	-	High_confidence	4	6	12	0.409434	3.084963	chr5	16737673	16737879	DNA|hAT-Charlie|MER20	+	chr5	16666379	16738414	MYO10|ENST00000515803.5	-	16666379,16668276,16670525,16671421,16672688,16673681,16674852,16676030,16679946,16681308,16681870,16683879,16685737,16689823,16694370,16699449,16700962,16702542,16702924,16704578,16710907,16711120,16738135	16666793,16668468,16670978,16671542,16672825,16673889,16675150,16676154,16680104,16681503,16682013,16683935,16685831,16689919,16694614,16699573,16701838,16702588,16703158,16704685,16711022,16711245,16738414	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	51354770	51354842	51354788	-	High_confidence	50	53	390	13.306604	5.617642	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.974359
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	41128861	41128918	41128917	-	RAMPAGE_only	8	8	26	0.887107	4.003856	chr13	41128633	41128957	SINE|Alu|AluJo	-	chr13	41127568	41132746	KBTBD6|ENST00000379485.1	-	41127568	41132746	0.961538
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	129488856	129488873	129488856	+	High_confidence	8	8	18	0.614151	3.302723	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.833333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	58215233	58215283	58215282	+	RAMPAGE_only	4	4	11	0.375314	3.459432	chr14	58215306	58216129	LINE|L2|L2c	+	chr14	58213033	58234734	ACTR10|ENST00000557711.5	+	58213033,58215204,58219693,58223621,58223782,58230398,58232065,58234369	58213698,58215284,58219729,58223701,58223856,58230480,58232267,58234734	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	31180985	31181066	31181001	-	RAMPAGE_only	5	6	38	1.296541	4.425141	chr1	31180952	31181135	SINE|MIR|MIRc	+	chr1	31179744	31239554	NKAIN1|ENST00000373736.6	-	31179744,31181859,31182529,31183816,31185246,31188049,31239493	31181712,31181941,31182590,31184014,31185327,31188187,31239554	0.973684
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	150457316	150457326	150457325	+	RAMPAGE_only	4	4	11	0.375314	2.921928	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150364710	150473556	RPRD2|ENST00000369068.4	+	150364710,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150364919,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	0.909091
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	117877371	117877417	117877416	-	High_confidence	18	18	65	2.217767	4.251168	chr11	117877415	117877598	SINE|MIR|MIRb	+	chr11	117836975	117877486	FXYD6|NM_001164831.2	-	117836975,117839780,117840318,117841147,117841790,117841989,117842718,117877298	117838277,117839830,117840368,117841184,117841865,117842028,117842781,117877486	0.969231
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	133396125	133396148	133396138	+	High_confidence	15	15	65	2.217767	5.271419	chr7	133396038	133396214	DNA|hAT-Charlie|MER5A	+	chr7	133396138	133630138	EXOC4|ENST00000486409.6	+	133396138,133475327,133480049,133630044	133396414,133475473,133480138,133630138	0.861538
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	5726383	5726387	5726386	-	High_confidence	5	5	9	0.307075	3.000000	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	9621584	9621592	9621591	+	High_confidence	3	3	8	0.272956	2.500000	chr19	9621594	9621665	SINE|Alu|FLAM_C	+	chr19	9621516	9634862	ZNF561-AS1|ENST00000587536.5	+	9621516,9626783,9632227,9633459	9621645,9626860,9632417,9634862	0.625000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	88698414	88698415	88698414	-	RAMPAGE_only	11	11	11	0.375314	3.459432	chr5	88698391	88698695	LINE|L2|L2a	+	chr5	88667341	88691041	LINC00461|ENST00000513893.5	-	88667341,88671035,88672964,88690912	88667591,88671085,88673090,88691041	0.727273
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	77417382	77417385	77417382	-	RAMPAGE_only	2	2	7	0.238836	2.584963	chr2	77416868	77417924	LINE|L1|L1PA4	+	chr2	77245554	77522210	MSTRG.13699.5	-	77245554,77246958,77308148,77326818,77521667	77246781,77307542,77326339,77519864,77522210	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	26213708	26213739	26213738	-	RAMPAGE_only	8	8	20	0.682390	3.784184	chr14	26213640	26213876	LINE|L2|L2c	+	chr14	25647303	26143305	LINC02306|ENST00000546412.2	-	25647303,25649798,25660845,25663482,25664734,25835849,25837128,25838459,26126156,26143106	25649257,25649905,25660927,25663550,25664975,25835974,25837211,25838530,26126215,26143305	0.700000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	175886358	175886397	175886358	-	RAMPAGE_only	6	9	22	0.750629	4.186704	chr4	175885885	175886507	LINE|L1|L1MEd	+	chr4	175632936	175813114	GPM6A|NM_201591.2	-	175632936,175640128,175640752,175651833,175673679,175701574,175812190	175635057,175640194,175640829,175651987,175673836,175701767,175813114	0.772727
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	69069451	69069464	69069463	-	RAMPAGE_only	4	4	8	0.272956	2.521641	chr17	69069462	69069607	LTR|ERVL|LTR33	-	chr17	68974487	69061064	ABCA9|ENST00000340001.8	-	68974487,68976134,68982561,68983708,68984055,68984884,68985052,68986163,68989026,68989812,68990836,68992174,68993015,68995894,69007758,69008061,69011975,69016252,69017655,69018412,69020387,69021741,69024213,69026376,69026975,69027329,69027639,69028534,69029168,69032107,69033725,69035245,69035659,69043488,69044496,69045171,69049282,69051030,69060865	68976013,68976190,68982641,68983849,68984175,68984979,68985128,68986324,68989118,68989930,68990957,68992266,68993084,68996014,69007872,69008235,69012083,69016390,69017789,69018579,69020586,69021861,69024353,69026467,69027114,69027449,69027815,69028645,69029227,69032276,69033873,69035431,69035801,69043715,69044600,69045336,69049490,69051139,69061064	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	41359606	41359607	41359606	+	High_confidence	34	36	43	1.467138	3.991308	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.883721
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	92536601	92536602	92536601	-	High_confidence	9	10	13	0.443553	3.418296	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.692308
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	46540530	46540549	46540543	-	RAMPAGE_only	4	4	22	0.750629	4.121928	chr19	46540383	46540588	LTR|ERVL-MaLR|MLT1B	-	chr19	46481084	46490120	PPP5D1|ENST00000595691.1	-	46481084,46489865	46481440,46490120	0.590909
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	26395705	26395706	26395705	+	High_confidence	7	7	7	0.238836	2.807355	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	84287152	84287159	84287152	+	RAMPAGE_only	5	6	13	0.443553	3.334679	chr8	84286429	84287210	LTR|ERV1|LTR39	-	chr8	84184940	84529464	MSTRG.23079.8	+	84184940,84287374,84529298	84287318,84418077,84529464	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	48868595	48868631	48868595	-	High_confidence	70	75	413	14.091353	7.082242	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.995157
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	47316611	47316625	47316624	-	RAMPAGE_only	2	3	7	0.238836	2.807355	chr16	47316225	47316700	LINE|L1|L1MC4	-	chr16	47154386	47312275	ITFG1|ENST00000568047.5	-	47154386,47158872,47161749,47162539,47218867,47237964,47258631,47260544,47311239,47311913	47155778,47158990,47161832,47162664,47218946,47238008,47258740,47260695,47311412,47312275	0.714286
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	90258079	90258080	90258079	+	RAMPAGE_only	5	5	7	0.238836	2.521641	chr14	90258077	90258330	SINE|MIR|MIRb	+	chr14	90256577	90272550	PSMC1|ENST00000543772.2	+	90256577,90259159,90263317,90263661,90264040,90265069,90268223,90269396,90270197,90272272	90256600,90259213,90263442,90263847,90264169,90265166,90268413,90269548,90270352,90272550	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	149752626	149752683	149752641	-	High_confidence	22	37	212	7.233334	4.962394	chr3	149752625	149752732	LINE|L2|L2a	-	chr3	149738469	149752499	COMMD2|ENST00000473414.5	-	149738469,149750677,149751402,149752209,149752377	149741718,149750851,149751485,149752287,149752499	0.971698
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	106682334	106682374	106682373	-	RAMPAGE_only	9	9	21	0.716509	4.221928	chr11	106682331	106682490	DNA|hAT-Charlie|MER5B	+	chr11	106674011	107018445	GUCY1A2|NM_001256424.1	-	106674011,106708511,106746550,106776438,106809992,106939459,106978618,106986069,107017752	106687756,106708666,106746643,106776582,106810478,106940178,106978740,106986131,107018445	0.952381
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	10380467	10380694	10380562	+	RAMPAGE_only	16	23	170	5.800315	4.782936	chr1	10380425	10380719	SINE|Alu|AluSx	+	chr1	10344774	10381596	MSTRG.202.12	+	10344774,10345844,10347760,10348648,10352630,10360928,10361691,10363282,10365099,10365408,10368466,10371140,10374315,10374853,10375254,10376544,10377455	10344917,10345953,10347827,10348733,10352736,10361043,10361825,10363344,10365245,10365648,10368538,10371262,10374465,10375046,10375373,10377424,10381596	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	61813817	61813823	61813820	+	RAMPAGE_only	5	5	14	0.477673	3.378783	chr4	61813790	61813894	SINE|tRNA|LFSINE_Vert	-	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.785714
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	217362	217363	217362	+	High_confidence	7	8	9	0.307075	3.000000	chr3	217318	217820	LINE|L2|L2a	-	chr3	217534	328223	CHL1|ENST00000449294.6	+	217534,244612,319682,325958,328166	217700,244692,319867,326064,328223	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	202564828	202564860	202564828	+	RAMPAGE_only	5	5	30	1.023585	4.481728	chr2	202564765	202565066	SINE|Alu|AluSc8	+	chr2	202377433	202567751	BMPR2|ENST00000374574.2	+	202377433,202464808,202467518,202513718,202514887,202518821,202520086,202530793,202532584,202542310,202552715,202559695	202377550,202464979,202467689,202513829,202514979,202519052,202520201,202530954,202532732,202542447,202552888,202567751	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	102449836	102449846	102449844	+	High_confidence	7	9	28	0.955346	4.060262	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449852	102456293	RPARP-AS1|ENST00000492465.2	+	102449852,102450186,102451398,102452089,102455336	102450022,102450360,102451555,102452187,102456293	0.928571
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	42027515	42027539	42027530	+	RAMPAGE_only	4	4	13	0.443553	3.584963	chr18	42027565	42027649	DNA|hAT-Charlie|MER58B	+	chr18	42025781	42037817	PIK3C3|ENST00000590013.2	+	42025781,42027442,42029324,42033825,42037691	42025939,42027548,42029441,42033957,42037817	0.769231
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	32527409	32527411	32527410	-	RAMPAGE_only	3	5	8	0.272956	2.807355	chr13	32527156	32527383	SINE|MIR|MIRc	-	chr13	32516893	32525579	N4BP2L2|ENST00000503814.1	-	32516893,32521372	32518003,32525579	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	143281669	143281690	143281686	-	High_confidence	47	57	158	5.390881	4.982552	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.556962
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	96934425	96934438	96934425	+	RAMPAGE_only	2	2	6	0.204717	2.584963	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	32901921	32901929	32901921	-	High_confidence	2	2	6	0.204717	2.584963	chr1	32901892	32901988	SINE|MIR|MIRb	+	chr1	32894845	32901438	TMEM54|ENST00000475208.5	-	32894845,32895304,32895554,32898125,32901222	32894879,32895439,32895743,32898319,32901438	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	15657883	15657884	15657883	+	RAMPAGE_only	23	24	24	0.818868	3.464235	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.958333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	61517335	61517398	61517335	+	RAMPAGE_only	11	12	45	1.535377	4.652391	chr4	61517137	61518029	DNA|hAT-Charlie|Charlie17b	+	chr4	61497293	62071127	ADGRL3|ENST00000506746.5	+	61497293,61517314,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61517518,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	127765174	127765193	127765174	-	RAMPAGE_only	5	5	9	0.307075	2.947703	chr2	127765110	127765160	LINE|CR1|L3	-	chr2	127701021	127811147	WDR33|ENST00000322313.8	-	127701021,127708676,127709489,127709692,127713582,127717154,127719264,127721835,127722590,127722957,127723252,127724332,127724886,127725060,127726650,127763061,127764827,127765173,127768188,127768932,127770777,127811011	127706552,127708892,127709582,127709856,127714021,127717263,127720353,127721988,127722730,127723044,127723347,127724443,127724965,127725215,127726777,127763159,127764979,127765269,127768293,127769001,127771004,127811147	0.666667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	2242922	2242923	2242922	+	High_confidence	23	23	23	0.784748	4.262692	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	28681084	28681085	28681084	+	RAMPAGE_only	14	14	14	0.477673	3.378783	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	152412488	152412498	152412488	-	High_confidence	9	9	17	0.580031	4.000000	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.941176
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	70453678	70453689	70453678	+	RAMPAGE_only	4	4	10	0.341195	2.947703	chrX	70453648	70453712	DNA|hAT-Ac|OldhAT1	+	chrX	70452304	70505487	DLG3|ENST00000374355.7	+	70452304,70453636,70454213,70479149,70492106,70492520,70493375,70497179,70498519,70499175,70499876,70500470,70500897,70502162	70452755,70453793,70454316,70479264,70492283,70492596,70493475,70497221,70498570,70499277,70500049,70500580,70500989,70505487	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	9588117	9588131	9588130	-	RAMPAGE_only	3	3	7	0.238836	2.521641	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9561982	9613589	MSTRG.11368.11	-	9561982,9562921,9563377,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9593767,9595017,9613526	9562075,9563046,9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9593874,9595102,9613589	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	123631066	123631121	123631069	-	RAMPAGE_only	3	3	23	0.784748	3.327485	chr11	123630870	123631105	SINE|MIR|MIRc	+	chr11	123629188	123654604	SCN3B|ENST00000392770.6	-	123629188,123634120,123638185,123642445,123645586,123653746	123633776,123634206,123638324,123642671,123645750,123654604	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	51814794	51814941	51814939	+	RAMPAGE_only	16	28	118	4.026101	5.390819	chr15	51814979	51815278	SINE|Alu|AluSq2	+	chr15	51751560	51816368	TMOD2|ENST00000249700.8	+	51751560,51766372,51768261,51773711,51776931,51781043,51782720,51798196,51806376,51808419	51751712,51766567,51768418,51773834,51777018,51781174,51782828,51798340,51806521,51816368	0.991525
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	17803283	17803417	17803325	-	RAMPAGE_only	6	15	49	1.671855	4.232604	chr4	17803030	17803324	SINE|Alu|AluSx	-	chr4	17800654	17810711	MSTRG.17877.1	-	17800654	17810711	0.938776
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	83208484	83208489	83208488	-	High_confidence	4	4	8	0.272956	2.807355	chr15	83208475	83208527	SINE|MIR|MIRb	-	chr15	83127752	83208018	HDGFL3|ENST00000299633.6	-	83127752,83151214,83157414,83157902,83163998,83207330	83139275,83151361,83157573,83158041,83164075,83208018	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	68847312	68847338	68847337	+	RAMPAGE_only	3	3	14	0.477673	3.182006	chr6	68845820	68847384	LTR|ERVL-MaLR|THE1A-int	+	chr6	68783379	68875030	MSTRG.20629.1	+	68783379,68801309	68801262,68875030	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	58851957	58851958	58851957	+	RAMPAGE_only	9	10	10	0.341195	3.121928	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	49657348	49657367	49657348	-	High_confidence	2	2	6	0.204717	2.584963	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.833333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	76143758	76143804	76143803	+	RAMPAGE_only	5	5	25	0.852987	3.605389	chr3	76143666	76144158	LTR|ERVL|MLT2B4	-	chr3	75906801	76149036	MSTRG.16917.3	+	75906801,75937480,76073406	75906960,76073251,76149036	0.960000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	34988751	34988785	34988784	-	High_confidence	4	4	13	0.443553	3.418296	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.846154
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	53258320	53258364	53258340	-	RAMPAGE_only	8	8	24	0.818868	4.229871	chr1	53258163	53258293	LINE|L2|L2-3_Crp	-	chr1	53245748	53257323	LRP8|ENST00000529670.5	-	53245748,53246955,53250689,53255116,53257239	53245981,53247056,53250862,53255185,53257323	0.708333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	24318463	24318467	24318466	-	RAMPAGE_only	3	3	7	0.238836	2.584963	chr3	24318244	24318685	LINE|L2|L2c	+	chr3	24119042	24486595	THRB|ENST00000646432.1	-	24119042,24127498,24133315,24143500,24146674,24152389,24190073,24228937,24337299,24483922,24486399	24123125,24127757,24133462,24143706,24146822,24152490,24190334,24229001,24337371,24484095,24486595	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	48352118	48352119	48352118	+	RAMPAGE_only	11	11	15	0.511792	3.506891	chr16	48352051	48352235	DNA|hAT-Charlie|MER5A	+	chr16	48244387	48362737	MSTRG.9195.5	+	48244387,48252130,48256609,48258617,48261423,48262777,48270015,48277337,48296014,48299661,48303171,48334215,48347506,48348099,48351580,48361476	48244621,48252365,48256741,48258740,48261587,48262872,48270274,48277479,48296165,48299788,48303305,48336498,48347816,48348290,48356710,48362737	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50785222	50785243	50785222	+	RAMPAGE_only	2	3	9	0.307075	2.947703	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	21544451	21544452	21544451	-	RAMPAGE_only	19	19	28	0.955346	4.458591	chr4	21544311	21544682	LTR|ERVL-MaLR|MLT1E2	-	chr4	21512103	21589294	MSTRG.17886.10	-	21512103,21512188	21512164,21589294	0.750000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	123179123	123179140	123179139	-	RAMPAGE_only	2	2	7	0.238836	2.584963	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	45303421	45303439	45303438	+	High_confidence	5	5	9	0.307075	3.169925	chr7	45302357	45303463	LINE|L1|L1MB5	+	chr7	45303619	45304362	AC073968.1|ENST00000618594.1	+	45303619,45303843	45303737,45304362	0.666667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	73513609	73513648	73513636	+	High_confidence	79	79	448	15.285535	6.496615	chr17	73512579	73514063	LINE|L1|L1ME4b	+	chr17	73513611	73518770	AC124804.1|ENST00000583547.2	+	73513611,73516600	73513790,73518770	0.984375
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	37084185	37084197	37084192	+	RAMPAGE_only	2	2	7	0.238836	2.584963	chr21	37084122	37084370	LINE|L2|L2	-	chr21	37082946	37203107	TTC3|NM_003316.3	+	37082946,37087246,37087832,37088195,37088798,37090232,37091292,37094004,37095349,37096580,37108391,37121816,37122982,37124618,37126079,37129002,37132681,37135379,37138633,37140560,37144524,37147480,37148545,37150077,37150819,37151892,37152950,37156654,37159698,37160801,37161989,37164050,37165549,37167554,37172594,37182773,37185705,37187048,37188494,37191333,37192111,37195674,37197569,37197881,37200231,37201439	37084331,37087401,37087875,37088346,37088886,37090286,37091413,37094090,37095444,37096643,37108446,37121979,37123028,37124742,37126143,37129063,37132766,37135514,37138714,37140673,37144645,37147603,37148647,37150170,37150884,37152029,37153277,37156906,37159745,37160858,37162063,37164215,37166615,37167620,37172744,37182913,37185774,37187145,37188595,37191424,37192213,37196036,37197696,37198025,37200324,37203107	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	135548427	135548428	135548427	+	RAMPAGE_only	9	10	14	0.477673	3.378783	chr8	135548149	135548560	LINE|L2|L2a	-	chr8	135542702	135647026	KHDRBS3|ENST00000524282.1	+	135542702,135548753,135557447,135581877,135646992	135542770,135548900,135557587,135582073,135647026	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr11	74335377	74335406	74335378	-	RAMPAGE_only	4	6	16	0.545912	3.506891	chr11	74335126	74335419	SINE|Alu|AluSg4	-	chr11	74330311	74398465	PGM2L1|NM_173582.4	-	74330311,74338467,74342460,74342884,74343322,74345468,74346731,74347147,74351382,74368491,74370901,74371710,74374414,74398050	74336754,74338601,74342650,74343014,74343416,74345649,74346829,74347337,74351576,74368575,74370986,74371817,74374582,74398465	0.937500
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	169654660	169654693	169654660	-	RAMPAGE_only	2	2	7	0.238836	2.521641	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169457211	169649233	WDR27|ENST00000479310.5	-	169457211,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197	169457634,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649233	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	52661489	52661503	52661489	+	RAMPAGE_only	6	7	19	0.648270	3.530493	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	0.947368
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	53464774	53464813	53464812	+	RAMPAGE_only	2	3	10	0.341195	3.169925	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	64992074	64992110	64992074	-	RAMPAGE_only	8	8	14	0.477673	3.182006	chr7	64990915	64999343	LTR|ERV1|HERV3-int	-	chr7	64990808	65006653	ERV3-1|ENST00000394323.2	-	64990808,65006540	64993414,65006653	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	10503776	10503798	10503790	-	High_confidence	4	4	14	0.477673	3.546594	chr19	10503657	10503991	SINE|Alu|AluJr	-	chr19	10486119	10503741	KEAP1|ENST00000171111.9	-	10486119,10489191,10489647,10491576,10499394,10503240	10486818,10489368,10489853,10492262,10500080,10503741	0.928571
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	58455289	58455303	58455289	-	RAMPAGE_only	13	14	22	0.750629	3.744239	chr5	58455099	58455251	DNA|hAT-Charlie|MER5A	-	chr5	58453981	58460139	PLK2|NM_006622.3	-	58453981,58454910,58455284,58455538,58456025,58456491,58456944,58457180,58457487,58458083,58458398,58458724,58458984,58459689	58454774,58455021,58455414,58455779,58456155,58456589,58457092,58457379,58457583,58458171,58458528,58458841,58459092,58460139	0.954545
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	24690258	24690311	24690258	+	RAMPAGE_only	15	17	65	2.217767	4.720498	chr7	24690222	24690261	LINE|CR1|L3	-	chr7	24573345	24694193	MPP6|ENST00000222644.9	+	24573345,24623665,24641715,24649611,24650484,24663589,24665587,24666020,24668498,24679130,24680391,24687437	24573593,24623784,24641868,24649764,24650712,24663721,24665687,24666089,24668660,24679333,24680520,24694193	0.969231
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	45269114	45269175	45269148	-	High_confidence	11	13	89	3.036635	5.475804	chr22	45268944	45269106	DNA|hAT-Tip100|ORSL	-	chr22	45268775	45269156	MSTRG.16209.1	-	45268775	45269156	0.573034
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	177222696	177222758	177222715	+	RAMPAGE_only	15	19	39	1.330660	4.228498	chr2	177222525	177222789	SINE|Alu|AluJb	+	chr2	177219092	177223958	MSTRG.14351.6	+	177219092,177219407,177222059	177219314,177221976,177223958	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	53523885	53523891	53523885	-	High_confidence	2	2	7	0.238836	2.807355	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	104506183	104506227	104506226	+	RAMPAGE_only	4	5	24	0.818868	3.882045	chr2	104506225	104506290	SINE|MIR|MIRb	-	chr2	104434377	104512757	LINC01102|ENST00000447380.1	+	104434377,104505865,104507231,104512042	104434523,104506303,104507406,104512757	0.666667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	4780707	4780943	4780707	-	RAMPAGE_only	81	86	599	20.437579	3.976511	chr20	4780684	4780994	SINE|Alu|AluSg4	+	chr20	4780022	4795504	RASSF2|ENST00000478553.1	-	4780022,4786230,4787632,4788216,4789595,4790450,4792538,4792993,4795255	4784342,4786328,4787701,4788268,4789697,4790611,4792627,4793054,4795504	0.996661
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	46530319	46530385	46530370	-	RAMPAGE_only	18	18	121	4.128459	6.169862	chr19	46530185	46530438	LINE|L2|L2b	+	chr19	46481084	46490120	PPP5D1|ENST00000595691.1	-	46481084,46489865	46481440,46490120	0.636364
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	134330708	134330713	134330708	-	RAMPAGE_only	2	2	6	0.204717	2.584963	chr5	134330432	134330735	SINE|Alu|AluJb	+	chr5	134308000	134366523	CDKL3|ENST00000523832.1	-	134308000,134308573,134312291,134319357,134321790,134350248,134359896,134366358	134308466,134308727,134312380,134319497,134321903,134350427,134360091,134366523	0.833333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	65570465	65570536	65570512	+	High_confidence	11	11	76	2.593082	5.611957	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.631579
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	111911611	111911613	111911612	+	High_confidence	60	114	120	4.094340	5.527855	chr3	111911655	111911757	DNA|hAT-Ac|OldhAT1	+	chr3	111911609	111976465	PHLDB2|ENST00000495180.1	+	111911609,111913318,111919071,111920281,111932268,111939474,111940534,111945267,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111911724,111913702,111919215,111920419,111932397,111939630,111940645,111945357,111954029,111962312,111966703,111967824,111969909,111973817,111976465	0.916667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	101252178	101252208	101252178	-	High_confidence	3	3	15	0.511792	3.640224	chr7	101252158	101252242	LINE|L2|L2c	+	chr7	101239660	101252133	FIS1|ENST00000435848.1	-	101239660,101240829,101244006,101251894	101239903,101240906,101244139,101252133	0.866667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	40143714	40143725	40143714	-	RAMPAGE_only	2	2	8	0.272956	3.000000	chr19	40143453	40143756	SINE|Alu|AluSx	+	chr19	40075973	40090938	ZNF780A|ENST00000595773.5	-	40075973,40081818,40083110,40084744,40090905	40076209,40081914,40083237,40084798,40090938	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	193614814	193614824	193614823	+	High_confidence	7	7	15	0.511792	2.866248	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	77184331	77184342	77184341	+	RAMPAGE_only	4	5	11	0.375314	2.913977	chr3	77184293	77184650	LINE|L2|L2c	-	chr3	76272980	77317633	MSTRG.16917.8	+	76272980,77098013,77164659	76311417,77164386,77317633	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	95793768	95793782	95793781	+	RAMPAGE_only	3	3	6	0.204717	2.584963	chr5	95793796	95793956	DNA|hAT-Tip100|MER45A	+	chr5	95731174	95796367	RHOBTB3|ENST00000379982.7	+	95731174,95731858,95736888,95748332,95752238,95755395,95763507,95768045,95780251,95783796,95788761,95793058	95731684,95732084,95737075,95748487,95752350,95755761,95763620,95768166,95780425,95783963,95788858,95796367	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	94435350	94435351	94435350	-	RAMPAGE_only	4	4	7	0.238836	2.807355	chr12	94435233	94435447	LTR|ERV1|MER39	+	chr12	94308285	94412595	CEP83|ENST00000397807.6	-	94308285,94309917,94312913,94312930,94331699,94333481,94335588,94367793,94368056,94369921,94375885,94378790,94400849,94403169,94411696,94412317	94308917,94310107,94312929,94313017,94331829,94333639,94335664,94367943,94368201,94370036,94376017,94379042,94400981,94403262,94411847,94412595	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	86368952	86368953	86368952	+	RAMPAGE_only	4	4	7	0.238836	2.584963	chr8	86368776	86369052	LINE|L2|L2c	+	chr8	86374040	86467476	WWP1|ENST00000265428.4	+	86374040,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	43013359	43013393	43013392	-	High_confidence	21	21	39	1.330660	5.080274	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.974359
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	212488546	212488591	212488590	-	RAMPAGE_only	3	3	12	0.409434	2.845351	chr2	212488559	212488648	LTR|ERVL-MaLR|MLT1O	-	chr2	212267922	212538529	MSTRG.14627.11	-	212267922,212391649,212426361	212391609,212426275,212538529	0.916667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31119516	31119559	31119550	-	High_confidence	6	6	26	0.887107	4.238901	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.653846
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	34283251	34283438	34283437	-	RAMPAGE_only	13	13	96	3.275472	5.183652	chr6	34283197	34283502	SINE|Alu|AluSx4	-	chr6	34279678	34392674	NUDT3|ENST00000607016.1	-	34279678,34293450,34295640,34341861,34392263	34288931,34293535,34295685,34341972,34392674	0.979167
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	34364742	34364791	34364758	+	High_confidence	4	6	22	0.750629	4.186704	chr19	34364780	34364874	LINE|L2|L2a	+	chr19	34364739	34402413	GPI|NM_001289789.1	+	34364739,34365259,34366344,34366782,34368582,34377502,34377734,34378933,34379517,34381465,34393247,34393727,34393913,34396300,34396580,34399206,34399555,34399718,34399900	34365019,34365388,34366435,34366851,34368702,34377586,34377881,34379005,34379562,34381519,34393308,34393771,34394066,34396430,34396657,34399335,34399631,34399785,34402413	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	115663914	115663915	115663914	+	RAMPAGE_only	11	11	11	0.375314	3.277613	chr3	115663952	115664106	SINE|MIR|MIR	+	chr3	115623509	115721490	GAP43|ENST00000393780.3	+	115623509,115663520,115676012,115720793	115623719,115663916,115676610,115721490	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	64990020	64990041	64990020	-	RAMPAGE_only	3	3	8	0.272956	2.521641	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	61517440	61517482	61517472	+	RAMPAGE_only	3	3	18	0.614151	3.616875	chr4	61517137	61518029	DNA|hAT-Charlie|Charlie17b	+	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	11587465	11587475	11587465	-	High_confidence	4	4	8	0.272956	2.807355	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	2867835	2867879	2867850	+	High_confidence	9	9	34	1.160063	4.312036	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	100919827	100919855	100919854	-	RAMPAGE_only	5	5	25	0.852987	3.863465	chr8	100919701	100920019	LTR|ERV1|MER34B-int	-	chr8	100918575	100950571	YWHAZ|NM_001135702.1	-	100918575,100923954,100924134,100924915,100948595,100950405	100920752,100924050,100924298,100925039,100948900,100950571	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	30971762	30971772	30971762	+	High_confidence	12	12	19	0.648270	3.947703	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.894737
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	30975186	30975394	30975258	+	RAMPAGE_only	27	29	230	7.847484	4.700153	chr22	30975231	30975411	DNA|hAT-Charlie|Charlie15a	-	chr22	30972262	30976063	TUG1|ENST00000602393.1	+	30972262,30975169	30973601,30976063	0.956522
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	179325200	179325230	179325200	+	High_confidence	4	4	13	0.443553	3.238901	chr3	179325011	179325319	SINE|Alu|AluSp	-	chr3	179325152	179333829	ZNF639|ENST00000466264.5	+	179325152,179327560,179328282,179329617,179332988,179333268	179325322,179327631,179328351,179329728,179333123,179333829	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	220032390	220032452	220032390	-	RAMPAGE_only	2	2	16	0.545912	3.323231	chr1	220032081	220032353	SINE|Alu|AluY	-	chr1	219987295	220046451	EPRS|ENST00000609181.5	-	219987295,219988589,219996982,220001137,220005247,220006105,220007201,220010945,220018125,220018448,220018994,220019987,220022346,220024263,220025131,220030385,220032386,220033501,220034913,220040184,220046342	219987404,219988823,219997342,220001255,220005360,220006313,220007338,220011056,220018146,220018508,220019079,220020221,220022518,220024456,220025258,220030480,220032526,220033658,220035013,220040269,220046451	0.937500
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	81170412	81170431	81170419	-	High_confidence	17	17	98	3.343711	5.189767	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.938776
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	218549813	218549838	218549813	-	RAMPAGE_only	4	4	10	0.341195	2.921928	chr2	218549464	218549763	SINE|Alu|AluSx	-	chr2	218454814	218568291	USP37|ENST00000418019.5	-	218454814,218455579,218457091,218459789,218463305,218466009,218474629,218476839,218479649,218482069,218485663,218488303,218495759,218497733,218498025,218509978,218529955,218534608,218546220,218546918,218549808,218553552,218558497,218560819,218562717,218568177	218455017,218455718,218457161,218459905,218463366,218466176,218474885,218476981,218479715,218482234,218485743,218488421,218495950,218497857,218498157,218510140,218530040,218534706,218546298,218547091,218549909,218553724,218558677,218560883,218562813,218568291	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	54807582	54807594	54807582	+	High_confidence	5	5	12	0.409434	3.459432	chrX	54807588	54807638	SINE|MIR|MIRb	+	chrX	54807598	54815694	MAGED2|ENST00000375053.6	+	54807598,54809302,54809721,54810820,54811249,54811573,54812156,54812944,54813117,54813487,54814660,54815247	54807802,54809376,54810213,54811129,54811313,54811653,54812251,54813024,54813160,54813550,54814775,54815694	0.833333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	7137022	7137098	7137085	+	RAMPAGE_only	8	10	60	2.047170	4.801828	chr12	7137127	7137213	SINE|MIR|MIR1_Amn	+	chr12	7138681	7143198	CLSTN3|ENST00000544584.1	+	7138681,7141241,7142085,7142868,7143162	7138816,7141404,7142139,7143026,7143198	0.866667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	145815028	145815094	145815093	+	High_confidence	4	4	25	0.852987	4.243856	chr6	145815053	145815170	SINE|MIR|MIR3	-	chr6	145814911	145886585	AL356599.1|ENST00000606388.5	+	145814911,145828360,145883204	145815431,145828420,145886585	0.600000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	76068052	76068070	76068069	+	RAMPAGE_only	3	3	7	0.238836	2.584963	chr3	76067849	76068464	LINE|L2|L2a	-	chr3	75906801	76149036	MSTRG.16917.3	+	75906801,75937480,76073406	75906960,76073251,76149036	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	131011724	131011747	131011746	+	High_confidence	5	5	16	0.545912	3.577820	chr2	131011672	131012142	LINE|L2|L2	-	chr2	131011682	131046189	ARHGEF4|ENST00000355771.7	+	131011682,131027944,131038852,131040015,131040260,131041229,131041814,131043451,131044298,131045368,131046037	131011908,131028084,131039032,131040192,131040440,131041462,131041944,131043583,131044542,131045446,131046189	0.625000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	23676408	23676437	23676436	+	RAMPAGE_only	2	2	9	0.307075	2.750000	chr16	23676226	23676573	SINE|Alu|AluSx	+	chr16	23641391	23677455	DCTN5|ENST00000300087.6	+	23641391,23642954,23658506,23661169,23665625,23667046	23641590,23643023,23658625,23661281,23665728,23677455	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	66537221	66537232	66537231	+	RAMPAGE_only	5	5	11	0.375314	2.921928	chr15	66537276	66537403	SINE|Alu|AluJo	+	chr15	66505116	66549487	ZWILCH|ENST00000446801.6	+	66505116,66508745,66513987,66515525,66518878,66520589,66521049,66523676,66527289,66527856,66528851,66529493,66532246,66532984,66535932,66537167,66540097,66546590,66548350	66505391,66508892,66514083,66515644,66519078,66520660,66521205,66523748,66527383,66527912,66528957,66529573,66532403,66533013,66536069,66537263,66540210,66546705,66549487	0.909091
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	50756903	50756958	50756903	-	RAMPAGE_only	4	4	19	0.648270	4.142664	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.789474
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	94435445	94435446	94435445	-	RAMPAGE_only	4	4	7	0.238836	2.584963	chr12	94435233	94435447	LTR|ERV1|MER39	+	chr12	94308285	94412595	CEP83|ENST00000397807.6	-	94308285,94309917,94312913,94312930,94331699,94333481,94335588,94367793,94368056,94369921,94375885,94378790,94400849,94403169,94411696,94412317	94308917,94310107,94312929,94313017,94331829,94333639,94335664,94367943,94368201,94370036,94376017,94379042,94400981,94403262,94411847,94412595	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	9255195	9255309	9255245	+	RAMPAGE_only	12	14	72	2.456604	5.489098	chr18	9255173	9255383	LINE|L1|L1MEg	+	chr18	9216779	9256111	ANKRD12|ENST00000359158.7	+	9216779,9221851,9239476,9254210	9216900,9221999,9239556,9256111	0.958333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	118172456	118172481	118172456	-	RAMPAGE_only	1	1	7	0.238836	2.584963	chr12	118172293	118172417	LINE|L2|L2b	-	chr12	118149941	118160358	TAOK3|ENST00000543709.5	-	118149941,118151093,118152226,118160145	118150077,118151158,118152409,118160358	0.714286
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	243853175	243853180	243853179	-	RAMPAGE_only	10	12	19	0.648270	3.572431	chr1	243852982	243853201	LTR|ERVL-MaLR|MLT1A0	-	chr1	243499719	243851648	MSTRG.2419.3	-	243499719,243512323,243545509,243552728,243563719,243572925,243613670,243615095,243637610,243645892,243664771,243695590,243843124,243851048	243505334,243512426,243545597,243552943,243563848,243573048,243613739,243615161,243637742,243646037,243664883,243695716,243843282,243851648	0.947368
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	240714760	240714903	240714760	-	RAMPAGE_only	42	42	116	3.957862	5.850275	chr2	240714600	240714762	SINE|MIR|MIR3	-	chr2	240713763	240724849	KIF1A|ENST00000460788.5	-	240713763,240718049,240719005,240719773,240720913,240721806,240722455,240723412,240723974	240717406,240718168,240719198,240719926,240721038,240721884,240722656,240723558,240724849	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31117719	31117761	31117760	-	High_confidence	9	9	35	1.194182	3.810180	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.942857
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	140697971	140697984	140697971	+	High_confidence	3	3	6	0.204717	2.584963	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140698679	140704502	ZMAT2|ENST00000519913.6	+	140698679,140700818,140702005,140703917,140704425	140698831,140700912,140702129,140703991,140704502	0.833333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	70676501	70676533	70676501	-	RAMPAGE_only	3	3	10	0.341195	2.947703	chr15	70676255	70676461	SINE|MIR|MIRb	-	chr15	70656934	70684400	MSTRG.8179.5	-	70656934,70660150,70664661,70666723,70671038,70671964,70676492,70678098,70679607,70682757,70684264	70657127,70660216,70664814,70669462,70671091,70672001,70676591,70678206,70679676,70682795,70684400	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	9140379	9140422	9140393	+	High_confidence	68	68	292	9.962893	6.464678	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.767123
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr13	33818360	33818378	33818377	+	High_confidence	4	4	12	0.409434	3.095795	chr13	33818361	33818761	LINE|L2|L2a	-	chr13	33818068	33837507	RFC3|NM_002915.3	+	33818068,33821131,33823916,33825788,33829835,33830718,33831255,33835147,33836103	33818265,33821269,33823984,33825886,33830017,33830855,33831354,33835217,33837507	0.833333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	90405005	90405784	90405547	+	RAMPAGE_only	51	54	1569	53.533492	7.011683	chr14	90405466	90405547	SINE|tRNA-RTE|MamSINE1	+	chr14	90396982	90408261	CALM1|ENST00000356978.8	+	90396982,90400064,90401258,90403861,90404378,90404688	90397233,90400095,90401402,90403968,90404514,90408261	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	195688558	195688620	195688579	+	High_confidence	2	3	15	0.511792	3.807355	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688520	195708807	MUC20-OT1|ENST00000630417.2	+	195688520,195689338,195699029,195708133,195708746	195688797,195689438,195699207,195708435,195708807	0.933333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	25244104	25244149	25244109	-	High_confidence	18	18	49	1.671855	3.729260	chr1	25244059	25244116	SINE|Alu|Alu	-	chr1	25242248	25244105	RSRP1|ENST00000569495.5	-	25242248,25242538,25243549	25242426,25242705,25244105	0.959184
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	9973632	9973648	9973632	-	RAMPAGE_only	2	2	8	0.272956	2.750000	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	18644129	18644155	18644131	-	RAMPAGE_only	4	7	15	0.511792	3.506891	chr10	18644005	18644243	LINE|L1|L1MB7	-	chr10	18545560	18651622	NSUN6|ENST00000377304.6	-	18545560,18548111,18551822,18585948,18596207,18609844,18614459,18616183,18642475,18648489,18651128	18546145,18548237,18551971,18586093,18596327,18609926,18614613,18616293,18642555,18648645,18651622	0.666667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	168555342	168555577	168555537	-	RAMPAGE_only	11	12	151	5.152044	4.849033	chr5	168555251	168555542	SINE|Alu|AluSx	-	chr5	168548494	168579600	PANK3|ENST00000239231.6	-	168548494,168559031,168561392,168563888,168566012,168568645,168579255	168557621,168559157,168561516,168564065,168566266,168568998,168579600	0.973510
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	97437638	97437658	97437649	-	High_confidence	126	148	258	8.802830	6.761329	chr9	97437089	97437627	LTR|ERVL-MaLR|MLT1F2	-	chr9	97402304	97437685	MSTRG.24028.1	-	97402304,97437162	97404790,97437685	0.755814
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	70700103	70700124	70700123	-	High_confidence	6	7	10	0.341195	3.169925	chr15	70699992	70700076	SINE|MIR|MIRb	-	chr15	70671877	70699666	UACA|ENST00000560523.5	-	70671877,70676492,70677107,70678098,70679607,70682757,70684264,70687539,70687749,70690453,70691298,70695016,70699526	70672001,70676591,70677140,70678206,70679676,70682795,70684446,70687646,70687820,70690511,70691363,70695105,70699666	0.800000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	97037418	97037469	97037445	+	RAMPAGE_only	4	5	27	0.921226	4.430632	chr3	97037121	97037662	LINE|L2|L2c	-	chr3	97014406	97187577	MSTRG.16966.1	+	97014406,97042166,97084147	97041879,97083744,97187577	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	193089897	193089947	193089922	+	RAMPAGE_only	4	4	19	0.648270	3.826875	chr1	193089802	193090103	SINE|Alu|AluSc5	-	chr1	193059453	193091219	TROVE2|ENST00000432079.5	+	193059453,193075819,193076500,193076912,193081363,193082185,193082561,193084578	193059776,193076040,193076647,193077050,193081480,193082299,193082708,193091219	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	103777154	103777289	103777236	-	RAMPAGE_only	3	3	34	1.160063	3.384047	chr12	103777216	103777295	DNA|TcMar-Tigger|Tigger19b	+	chr12	103772302	103841197	NT5DC3|NM_001031701.2	-	103772302,103780299,103785334,103787440,103788837,103793163,103793409,103793936,103796893,103798586,103806321,103806854,103814936,103840948	103778081,103780364,103785475,103787527,103788919,103793265,103793512,103793997,103797031,103798677,103806377,103806929,103815121,103841197	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	127330830	127330860	127330859	-	High_confidence	6	6	10	0.341195	3.121928	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	89888929	89888930	89888929	+	RAMPAGE_only	11	14	15	0.511792	3.132915	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.733333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	1655409	1655449	1655409	-	RAMPAGE_only	6	11	28	0.955346	4.521641	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	32927963	32927977	32927976	+	RAMPAGE_only	25	26	60	2.047170	5.231756	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.816667
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	68267936	68267937	68267936	+	RAMPAGE_only	10	10	10	0.341195	2.921928	chr16	68267617	68268452	LTR|ERVL|MER21B	+	chr16	68266601	68275001	SLC7A6|ENST00000563146.1	+	68266601,68273821,68274690	68266721,68273904,68275001	0.600000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	23980485	23980514	23980505	-	High_confidence	3	5	13	0.443553	3.251629	chr22	23980449	23980597	SINE|MIR|MIRc	+	chr22	23971364	23980492	MSTRG.15866.1	-	23971364,23973767,23974306,23980411	23971623,23973943,23974439,23980492	0.923077
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	176162952	176162985	176162962	-	RAMPAGE_only	3	3	13	0.443553	3.392747	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.846154
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	13544242	13544491	13544265	-	RAMPAGE_only	5	5	87	2.968396	5.793929	chr12	13542496	13545457	LINE|L2|L2a	+	chr12	13537336	13980363	GRIN2B|ENST00000609686.3	-	13537336,13567024,13569829,13571803,13608602,13611724,13615113,13615492,13616454,13675744,13753316,13865797,13979927	13564639,13567263,13570017,13571964,13608832,13611850,13615267,13615664,13616657,13675859,13753915,13866226,13980363	0.965517
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	23752500	23752524	23752500	+	High_confidence	7	7	22	0.750629	4.121928	chr7	23752350	23752640	SINE|Alu|AluSz6	-	chr7	23752802	23772274	STK31|ENST00000478321.1	+	23752802,23754314,23755055,23762800,23768994,23769639,23771004,23772146	23752832,23754474,23755196,23762923,23769174,23769756,23771124,23772274	0.909091
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	122444187	122444632	122444187	-	RAMPAGE_only	81	92	919	31.355818	5.846200	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	0.998912
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	98733155	98733222	98733205	+	High_confidence	3	4	22	0.750629	4.297079	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.727273
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	3195705	3195740	3195732	-	High_confidence	13	14	32	1.091824	4.671781	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182743	3195747	LINC02525|ENST00000425384.6	-	3182743,3190826,3195665	3183726,3191230,3195747	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	13543662	13544199	13544053	-	RAMPAGE_only	10	10	303	10.338208	7.119189	chr12	13542496	13545457	LINE|L2|L2a	+	chr12	13537336	13980363	GRIN2B|ENST00000609686.3	-	13537336,13567024,13569829,13571803,13608602,13611724,13615113,13615492,13616454,13675744,13753316,13865797,13979927	13564639,13567263,13570017,13571964,13608832,13611850,13615267,13615664,13616657,13675859,13753915,13866226,13980363	0.996700
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	22024607	22024639	22024636	+	High_confidence	3	4	12	0.409434	3.277613	chr8	22024494	22024638	DNA|hAT-Charlie|MER5A	+	chr8	22024433	22036897	NPM2|ENST00000518119.5	+	22024433,22024723,22025215,22025435,22025646,22033129,22034108,22034509,22036492,22036637	22024623,22024830,22025306,22025521,22025772,22033223,22034275,22034544,22036526,22036897	0.833333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	53523951	53523966	53523953	-	High_confidence	3	4	10	0.341195	3.169925	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	85272971	85273011	85272971	+	RAMPAGE_only	2	2	15	0.511792	3.132915	chr3	85272772	85274601	LINE|L2|L2a	-	chr3	84959004	85487538	MSTRG.16946.4	+	84959004,85238956,85331527	84959668,85331475,85487538	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	65053820	65053873	65053820	-	RAMPAGE_only	3	3	19	0.648270	3.616349	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.684211
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr10	82047383	82047392	82047383	+	High_confidence	6	6	10	0.341195	3.321928	chr10	82047242	82049082	LINE|L1|L1PA3	+	chr10	82046537	82083917	MSTRG.3070.8	+	82046537	82083917	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	101217580	101217599	101217598	-	High_confidence	2	2	8	0.272956	2.521641	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.750000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	82081606	82081705	82081606	-	High_confidence	26	26	73	2.490723	5.200252	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.561644
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	40363394	40363395	40363394	-	RAMPAGE_only	42	42	48	1.637736	5.119522	chr6	40362782	40364444	LINE|L1|L1MEc	+	chr6	40358743	40369474	AL139275.1|ENST00000447315.1	-	40358743,40369388	40359481,40369474	0.875000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	175891530	175891573	175891562	-	RAMPAGE_only	5	5	22	0.750629	3.721928	chr4	175890999	175891614	LTR|ERV1|MER90a	+	chr4	175632936	175813114	GPM6A|NM_201591.2	-	175632936,175640128,175640752,175651833,175673679,175701574,175812190	175635057,175640194,175640829,175651987,175673836,175701767,175813114	0.909091
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	73713555	73713678	73713607	-	High_confidence	4	4	49	1.671855	4.716618	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	0.938776
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	147405901	147405902	147405901	-	RAMPAGE_only	5	5	8	0.272956	2.521641	chr5	147405844	147405951	SINE|MIR|MIRb	+	chr5	147393824	147401602	DPYSL3|ENST00000520473.1	-	147393824,147395558,147399081,147400691,147401539	147394123,147395721,147399252,147400833,147401602	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	37903557	37903558	37903557	-	High_confidence	9	9	10	0.341195	3.169925	chr9	37903533	37903620	SINE|MIR|MIR3	+	chr9	37887603	37904110	SLC25A51|ENST00000377716.6	-	37887603,37899828,37903530	37888592,37899950,37904110	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	34536102	34536110	34536109	-	High_confidence	6	6	13	0.443553	3.022055	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.615385
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	6126783	6126801	6126783	+	RAMPAGE_only	3	3	8	0.272956	2.750000	chr7	6126777	6127866	LINE|L1|L1MDa	-	chr7	6116479	6155147	USP42|ENST00000426246.2	+	6116479,6135840,6139091,6140127,6140913,6142931,6144084,6145515,6146147,6147738,6149582,6150411,6153755	6116939,6135951,6139194,6140195,6140984,6143014,6144196,6145656,6146248,6147892,6150302,6150506,6155147	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	169721862	169721901	169721862	+	RAMPAGE_only	3	3	14	0.477673	3.093069	chr4	169721858	169722117	SINE|Alu|AluJb	-	chr4	169662721	169723183	CLCN3|ENST00000504131.6	+	169662721,169663113,169663526,169680049,169687657,169689042,169690529,169692113,169695611,169697188,169703997,169706867,169713078,169719906	169662738,169663114,169663617,169680207,169687757,169689230,169690652,169692320,169695692,169697734,169704184,169707266,169713295,169723183	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr20	18137169	18137178	18137169	+	High_confidence	2	2	7	0.238836	2.584963	chr20	18137136	18137292	SINE|Alu|AluSz	+	chr20	18137854	18143169	PET117|NM_001164811.1	+	18137854,18142207	18138051,18143169	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	20658558	20658608	20658597	+	High_confidence	6	6	43	1.467138	4.861970	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.860465
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	23939582	23939592	23939582	+	High_confidence	2	2	7	0.238836	2.584963	chr2	23939241	23939827	LTR|ERV1|MER92B	-	chr2	23940418	24004909	UBXN2A|ENST00000309033.4	+	23940418,23958300,23971275,23976968,23982895,23984672,23999671	23940648,23958355,23971414,23977075,23983033,23984831,24004909	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	5726324	5726325	5726324	-	High_confidence	57	62	71	2.422484	5.021029	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.647887
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	47143705	47143722	47143717	-	High_confidence	9	9	26	0.887107	4.084963	chr16	47143450	47143941	LTR|ERV1|LTR12C	+	chr16	47081633	47143709	NETO2|ENST00000303155.9	-	47081633,47086225,47109482,47122656,47122888,47128324,47129223,47131968,47143578	47083801,47086339,47109711,47122784,47122912,47128573,47129364,47132025,47143709	0.923077
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	40097679	40097707	40097704	-	High_confidence	4	4	17	0.580031	3.577820	chr1	40097465	40097687	SINE|MIR|MIR	-	chr1	40071460	40097727	PPT1|ENST00000642050.1	-	40071460,40076841,40078559,40080396,40089409,40091328,40092044,40092397,40097114	40074183,40076913,40078658,40080487,40089512,40091399,40092172,40092507,40097727	0.588235
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr22	50785260	50785285	50785260	+	RAMPAGE_only	2	2	10	0.341195	2.503258	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	180830987	180831010	180831009	+	High_confidence	12	12	64	2.183648	5.050094	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.937500
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	31376356	31376357	31376356	-	High_confidence	45	47	47	1.603616	3.637228	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.851064
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	27746196	27746224	27746223	-	High_confidence	3	3	16	0.545912	3.773557	chr19	27745823	27746290	LTR|ERVK|LTR22B1	+	chr19	27730272	27746230	LINC00662|ENST00000561521.1	-	27730272,27732795,27746097	27732447,27732967,27746230	0.750000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	80059915	80059926	80059918	+	High_confidence	45	55	130	4.435535	4.922514	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	115647979	115648001	115647979	+	RAMPAGE_only	3	3	10	0.341195	3.169925	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	113758081	113758085	113758081	-	RAMPAGE_only	3	3	7	0.238836	2.807355	chr1	113758040	113758255	SINE|Alu|AluSq2	+	chr1	113697201	113759155	PHTF1|ENST00000393357.6	-	113697201,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113759155	0.857143
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	84664708	84664721	84664708	+	RAMPAGE_only	3	3	11	0.375314	2.646439	chr16	84664613	84664712	DNA|hAT-Charlie|MER117	+	chr16	84659538	84667686	KLHL36|ENST00000325279.4	+	84659538,84661577	84659917,84667686	0.909091
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	73837439	73837451	73837450	-	RAMPAGE_only	5	6	11	0.375314	3.095795	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	80133953	80133964	80133953	+	High_confidence	3	5	12	0.409434	3.251629	chr7	80133950	80134060	SINE|MIR|MIR3	-	chr7	80133957	80218111	GNAI1|ENST00000649267.1	+	80133957,80135005,80188950,80189089,80199224,80203703,80210968,80212715,80217302	80134312,80135278,80188993,80189231,80199382,80203832,80211098,80212869,80218111	0.750000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	12069749	12069792	12069758	+	High_confidence	13	13	46	1.569497	4.813136	chr17	12069730	12069890	LINE|CR1|L3	+	chr17	12069755	12125350	MAP2K4|ENST00000579089.5	+	12069755,12095574,12107789,12110374,12113232,12125293	12069849,12095694,12107909,12110426,12113360,12125350	0.630435
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	118651542	118651602	118651563	-	High_confidence	85	89	645	22.007076	7.171132	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.967442
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr6	145736000	145736023	145736022	-	High_confidence	4	5	8	0.272956	2.807355	chr6	145735975	145736071	SINE|MIR|MIR3	+	chr6	145625303	145735855	EPM2A|NM_005670.3	-	145625303,145635244,145686121,145735197	145627693,145635486,145686296,145735855	0.625000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	134485443	134485494	134485443	-	High_confidence	68	74	485	16.547956	6.758011	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.960825
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	213230510	213230528	213230510	+	RAMPAGE_only	4	4	11	0.375314	3.121928	chr1	213230560	213230856	SINE|Alu|AluSq2	+	chr1	213072937	213274773	RPS6KC1|ENST00000490299.5	+	213072937,213077695,213104453,213129526,213167857,213176399,213230496,213232122,213240701,213242568,213261557,213262720,213272523	213072986,213077816,213104569,213129889,213167973,213176492,213230544,213232255,213242297,213242658,213261640,213262816,213274773	0.727273
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	113019811	113019853	113019852	-	High_confidence	6	9	24	0.818868	4.095795	chr3	113019838	113019987	DNA|hAT-Charlie|MER5B	+	chr3	113011055	113019851	NEPRO|ENST00000494164.5	-	113011055,113013952,113019541	113011406,113014032,113019851	0.625000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	84321191	84321226	84321205	+	RAMPAGE_only	4	5	18	0.614151	3.852169	chr8	84321227	84321507	LINE|L1|L1MCb	+	chr8	84184940	84529464	MSTRG.23079.8	+	84184940,84287374,84529298	84287318,84418077,84529464	0.944444
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr17	21000722	21000837	21000803	-	RAMPAGE_only	13	16	48	1.637736	5.240655	chr17	21000780	21001059	SINE|Alu|AluSx	+	chr17	20999592	21043039	USP22|ENST00000261497.8	-	20999592,21004201,21004927,21006895,21007869,21011150,21012829,21015751,21017941,21019083,21021112,21028541,21042664	21003073,21004351,21004990,21006987,21007996,21011309,21012935,21015899,21018111,21019185,21021226,21028674,21043039	0.979167
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	23384717	23384736	23384717	-	High_confidence	2	2	9	0.307075	2.750000	chr21	23384605	23385150	LTR|ERVL|MLT2B3	-	chr21	23361103	23384835	D21S2088E|NR_040254.1	-	23361103,23364037,23372326,23372947,23384687	23362239,23364193,23372448,23373084,23384835	0.555556
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	39369893	39369894	39369893	-	RAMPAGE_only	20	20	23	0.784748	3.572624	chr12	39369860	39369969	LINE|Penelope|Penelope1_Vert	+	chr12	39357250	39367927	KIF21A|ENST00000552908.1	-	39357250,39358177,39363097,39366349,39367029,39367882	39357437,39358373,39363213,39366517,39367188,39367927	0.565217
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	78620056	78620057	78620056	+	High_confidence	29	34	34	1.160063	4.432620	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.911765
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	96968771	96968903	96968817	-	RAMPAGE_only	5	6	49	1.671855	5.115847	chr7	96968723	96968905	DNA|hAT-Tip100|MamTip3	-	chr7	96965526	97004298	DLX6-AS1|ENST00000431497.6	-	96965526,97003508	96969118,97004298	0.938776
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	169812802	169812811	169812810	-	High_confidence	7	8	12	0.409434	2.855389	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793427	169812786	LRRC34|NM_153353.4	-	169793427,169795484,169796213,169796744,169804052,169806847,169807425,169807587,169808627,169812409	169793838,169795611,169796369,169796899,169804181,169806931,169807490,169807709,169808745,169812786	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	108768188	108768226	108768188	+	RAMPAGE_only	4	4	22	0.750629	4.106603	chr5	108768042	108768250	LINE|CR1|L3b	-	chr5	108748966	108843001	FER|ENST00000502752.1	+	108748966,108768092,108782662,108798123,108832769,108835707,108841830,108842261	108748993,108768238,108782755,108798389,108832943,108835807,108841868,108843001	0.727273
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr8	58449621	58449635	58449621	+	RAMPAGE_only	2	4	11	0.375314	2.913977	chr8	58449418	58450701	LTR|ERVL-MaLR|MLT1D-int	-	chr8	58411263	58451501	UBXN2B|NM_001077619.1	+	58411263,58416849,58430518,58433159,58434394,58439632,58445906,58447388	58411469,58416953,58430669,58433243,58434504,58439770,58446068,58451501	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr21	23384865	23384873	23384865	-	High_confidence	23	26	43	1.467138	5.058984	chr21	23384605	23385150	LTR|ERVL|MLT2B3	-	chr21	23361103	23384861	D21S2088E|ENST00000262354.4	-	23361103,23364037,23372326,23372947,23384687	23362239,23364193,23372448,23373084,23384861	0.744186
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	20423690	20423704	20423703	-	RAMPAGE_only	25	37	81	2.763679	4.770856	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.802469
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr15	74174548	74174572	74174571	+	High_confidence	39	40	119	4.060220	4.939221	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	0.991597
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	9255801	9255925	9255880	+	RAMPAGE_only	8	8	89	3.036635	6.076747	chr18	9255910	9256385	LINE|L1|HAL1b	+	chr18	9137562	9285985	ANKRD12|NM_001204056.1	+	9137562,9182381,9195550,9208656,9211583,9216757,9221851,9254210,9263789,9275523,9279548,9280940	9137873,9182519,9195698,9208803,9211784,9216900,9221999,9258931,9263888,9275667,9279644,9285985	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	100829598	100829613	100829604	+	High_confidence	3	4	16	0.545912	3.456565	chr14	100829596	100829639	LINE|L2|L2b	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.687500
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	166850264	166850330	166850274	+	RAMPAGE_only	4	5	29	0.989465	4.513153	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	10150473	10150474	10150473	+	RAMPAGE_only	16	17	17	0.580031	3.734522	chr3	10150364	10150494	LINE|L2|L2c	+	chr3	10141787	10152082	VHL|ENST00000345392.2	+	10141787,10149786	10142187,10152082	0.941176
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	82631000	82631029	82631028	-	RAMPAGE_only	3	4	10	0.341195	3.169925	chr4	82630826	82631136	SINE|Alu|AluSx1	+	chr4	82629536	82798857	SCD5|NM_001037582.2	-	82629536,82636590,82680706,82705282,82798305	82631517,82636823,82680912,82705413,82798857	0.900000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	62801243	62801261	62801260	-	High_confidence	5	7	14	0.477673	3.664498	chr9	62800850	62801305	LTR|ERV1|LTR2	+	chr9	62798837	62801396	MSTRG.23825.1	-	62798837,62801081	62799262,62801396	0.571429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr18	36807846	36807880	36807865	-	High_confidence	3	5	15	0.511792	3.773557	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.733333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr2	231072206	231072255	231072254	+	RAMPAGE_only	9	9	28	0.955346	3.997953	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.928571
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	129439733	129439766	129439754	-	High_confidence	2	2	15	0.511792	3.324863	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129437046	129439937	MBD4|ENST00000505883.1	-	129437046,129437807,129439729	129437308,129437950,129439937	0.533333
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	127451104	127451142	127451104	-	High_confidence	3	3	16	0.545912	3.577820	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.937500
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr14	26213770	26213798	26213770	-	RAMPAGE_only	2	2	9	0.307075	3.000000	chr14	26213640	26213876	LINE|L2|L2c	+	chr14	25647303	26143305	LINC02306|ENST00000546412.2	-	25647303,25649798,25660845,25663482,25664734,25835849,25837128,25838459,26126156,26143106	25649257,25649905,25660927,25663550,25664975,25835974,25837211,25838530,26126215,26143305	0.555556
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	24052044	24052067	24052044	-	RAMPAGE_only	2	2	11	0.375314	3.277613	chr12	24051748	24052186	LINE|L2|L2	+	chr12	23532296	23951032	SOX5|NM_001261415.1	-	23532296,23536452,23543210,23546315,23563257,23575660,23604386,23640811,23665443,23734683,23740866,23755637,23845982,23895792,23950868	23534522,23536669,23543384,23546424,23563403,23575838,23604533,23640897,23665564,23734752,23741039,23755724,23846193,23896024,23951032	0.636364
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr9	33068824	33068915	33068824	-	RAMPAGE_only	4	5	35	1.194182	3.925411	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.971429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	174874422	174874458	174874438	+	High_confidence	5	5	14	0.477673	3.664498	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874457	174958182	RABGAP1L|ENST00000478442.5	+	174874457,174877391,174957456,174957890	174874506,174877605,174957549,174958182	0.500000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	76002244	76002255	76002244	+	RAMPAGE_only	4	5	14	0.477673	3.235926	chr3	76002068	76002311	LTR|ERVL-MaLR|MLT1C	+	chr3	75906801	76149036	MSTRG.16917.3	+	75906801,75937480,76073406	75906960,76073251,76149036	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr16	81664281	81664307	81664306	+	RAMPAGE_only	3	4	18	0.614151	3.175123	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.944444
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	51354919	51354933	51354919	-	High_confidence	2	2	9	0.307075	2.500000	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.777778
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr7	26399477	26399495	26399494	-	High_confidence	5	5	10	0.341195	2.725481	chr7	26399411	26399720	DNA|hAT-Charlie|MER33	+	chr7	26372018	26399418	LOC105375304|NR_136272.1	-	26372018,26399340	26372568,26399418	0.800000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr5	138880196	138880197	138880196	-	RAMPAGE_only	23	23	23	0.784748	3.468577	chr5	138880161	138880436	SINE|Alu|AluJb	-	chr5	138872631	138875368	LRRTM2|ENST00000518785.1	-	138872631,138874907	138874128,138875368	1.000000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr19	52169730	52169762	52169730	-	High_confidence	5	5	15	0.511792	3.323231	chr19	52169654	52169811	SINE|Alu|AluJb	+	chr19	52157365	52170386	ZNF836|ENST00000596428.5	-	52157365,52160464,52168057,52169647,52170359	52157540,52160591,52168152,52169781,52170386	0.800000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr4	170089393	170089503	170089451	-	High_confidence	9	9	88	3.002516	5.149800	chr4	170089443	170089514	LINE|L2|L2b	+	chr4	170070618	170089394	AADAT|ENST00000510340.5	-	170070618,170073135,170078508,170087115,170088395,170089260	170070652,170073345,170078583,170087248,170088564,170089394	0.897727
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	4303835	4303958	4303957	+	RAMPAGE_only	25	25	125	4.264937	6.178545	chr12	4303932	4303980	LINE|RTE-BovB|MamRTE1	+	chr12	4273771	4305350	CCND2|ENST00000261254.7	+	4273771,4276004,4278759,4288841,4299859	4274235,4276220,4278919,4288990,4305350	0.992000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	40464576	40464923	40464922	+	RAMPAGE_only	13	13	252	8.598113	6.337557	chr3	40464917	40465003	SINE|MIR|MIRb	+	chr3	40457291	40468587	RPL14|ENST00000338970.10	+	40457291,40457889,40458641,40461406,40461607,40461938	40457363,40457991,40458736,40461506,40461661,40468587	0.992063
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	56157286	56157459	56157338	+	High_confidence	35	38	359	12.248900	5.461529	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.885794
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	22409255	22409311	22409308	+	RAMPAGE_only	48	51	333	11.361793	6.475715	chr12	22409250	22409629	LTR|ERVL-MaLR|MLT1G3	-	chr12	22601424	22618867	AC087241.1|ENST00000508615.2	+	22601424,22618484	22601470,22618867	0.507508
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr1	212792444	212792473	212792472	-	High_confidence	9	12	35	1.194182	4.210765	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.771429
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr3	60277563	60277565	60277564	-	RAMPAGE_only	3	5	8	0.272956	2.521641	chr3	60277246	60277886	LTR|ERV1|LTR9D	+	chr3	59747277	60081127	FHIT|NM_001320901.1	-	59747277,59922345,60011370,60014006,60014205,60070858,60080790	59752321,59922414,60011400,60014075,60014264,60070939,60081127	0.750000
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	31120668	31120693	31120668	-	RAMPAGE_only	3	3	9	0.307075	2.750000	chr12	31120538	31120678	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.888889
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chrX	53220857	53220905	53220857	-	RAMPAGE_only	5	5	19	0.648270	3.350209	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	0.947368
occipital_lobe_female_fetal_20_weeks_and_male_fetal_22_weeks	chr12	32601284	32601314	32601311	+	RAMPAGE_only	2	2	10	0.341195	3.169925	chr12	32601190	32601318	SINE|MIR|MIRb	-	chr12	32582378	32644751	FGD4|ENST00000494977.1	+	32582378,32598496,32600409,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624658,32624975,32625653,32633548,32637649,32638654,32640275,32642760,32644593	32582467,32598586,32600509,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32624751,32625068,32625779,32633689,32637855,32638795,32640453,32642842,32644751	0.900000
OCI_LY7	chr14	81170392	81170433	81170392	-	High_confidence	3	3	18	1.182102	3.734522	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.611111
OCI_LY7	chr12	6493551	6493556	6493553	-	High_confidence	73	88	143	9.391145	4.914804	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	0.965035
OCI_LY7	chr16	87778565	87778591	87778590	+	High_confidence	3	3	6	0.394034	2.584963	chr16	87778560	87778854	SINE|Alu|AluJr	-	chr16	87778518	87780842	MSTRG.27271.1	+	87778518	87780842	1.000000
OCI_LY7	chr12	10396363	10396380	10396363	+	RAMPAGE_only	3	3	8	0.525379	2.521641	chr12	10396247	10396507	SINE|Alu|AluSz	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.875000
OCI_LY7	chr18	10950927	10950959	10950958	-	High_confidence	18	18	54	3.546307	5.291563	chr18	10950949	10951405	LTR|ERV1|MER65C	+	chr18	10948565	10951097	MSTRG.31540.1	-	10948565	10951097	0.555556
OCI_LY7	chr13	30376924	30376965	30376953	-	High_confidence	86	98	343	22.525614	6.526554	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30340269	30376964	MSTRG.17792.2	-	30340269,30363160,30367600,30372284,30373782,30376826	30341468,30363226,30367717,30372374,30375776,30376964	0.860058
OCI_LY7	chr6	6587361	6587402	6587361	-	High_confidence	73	79	150	9.850852	6.316623	chr6	6587337	6587525	DNA|hAT-Charlie|MER5A	-	chr6	6562318	6587367	MSTRG.57326.5	-	6562318,6587044	6564388,6587367	0.646667
OCI_LY7	chr15	75347042	75347071	75347052	+	High_confidence	3	3	12	0.788068	2.855389	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347052	75349170	NEIL1|ENST00000568059.1	+	75347052,75347246,75348883	75347110,75347473,75349170	0.583333
OCI_LY7	chr9	62897400	62897431	62897430	+	High_confidence	97	97	154	10.113541	5.793523	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.863636
OCI_LY7	chr8	23243634	23243635	23243634	+	High_confidence	151	152	179	11.755350	6.549706	chr8	23243551	23243732	LTR|ERV1|LTR21A	+	chr8	23243636	23260286	MSTRG.65048.6	+	23243636,23249209,23255246,23256459,23258032,23258329,23258731,23259065,23260143	23246604,23249381,23255432,23256593,23258081,23258449,23258830,23259126,23260286	0.815642
OCI_LY7	chr12	1203229	1203244	1203243	+	High_confidence	4	6	18	1.182102	3.461320	chr12	1203070	1203357	SINE|Alu|AluSx	-	chr12	1202356	1491079	MSTRG.13598.23	+	1202356,1204500,1236768,1263033,1289851,1371832,1408148,1444561,1490092	1203452,1204512,1236904,1263165,1290012,1371977,1408247,1444750,1491079	1.000000
OCI_LY7	chr3	9986881	9986905	9986898	+	High_confidence	57	61	192	12.609090	5.908646	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986910	10010012	MSTRG.46005.3	+	9986910,9988711,9998454,9998775	9987905,9988747,9998572,10010012	0.890625
OCI_LY7	chr6	34756705	34756733	34756732	+	High_confidence	5	5	9	0.591051	2.503258	chr6	34756685	34756984	SINE|Alu|AluSx1	-	chr6	34757093	34773857	SNRPC|NR_029472.1	+	34757093,34762594,34767907,34770290,34773445	34757551,34762703,34767997,34770395,34773857	1.000000
OCI_LY7	chr11	84567825	84567872	84567825	-	RAMPAGE_only	3	3	13	0.853740	3.180833	chr11	84567723	84568226	LINE|L1|L1M3b	+	chr11	83457918	84720915	DLG2|ENST00000648622.1	-	83457918,83462001,83466707,83469200,83471625,83472726,83484128,83532707,83541681,83633210,83786689,83833613,83874419,83930327,83962884,83965323,83980505,84059314,84098922,84163460,84251237,84534569,84720295	83459924,83462093,83466817,83469373,83471727,83472777,83484228,83532783,83541858,83633325,83786792,83833770,83874488,83930483,83963023,83965468,83980642,84059484,84099047,84163511,84251291,84534731,84720915	0.538462
OCI_LY7	chr10	28282062	28282108	28282062	-	High_confidence	19	19	66	4.334375	4.708919	chr10	28281945	28282364	LTR|ERVL|LTR86A1	+	chr10	28054060	28282089	MPP7|ENST00000375719.7	-	28054060,28056479,28058494,28059649,28069771,28089670,28119650,28120193,28120593,28124030,28125009,28131559,28147482,28149981,28202152,28238567,28254773,28280099,28282009	28054244,28056623,28058603,28059743,28069852,28089841,28119715,28120390,28120668,28124116,28125091,28131691,28147563,28150059,28202271,28238735,28254876,28280140,28282089	0.530303
OCI_LY7	chr5	173746164	173746211	173746176	-	High_confidence	14	14	47	3.086600	4.658303	chr5	173745880	173746596	LTR|ERV1|MER4A	+	chr5	173719245	173746211	LINC01484|ENST00000518902.1	-	173719245,173746019	173719543,173746211	0.702128
OCI_LY7	chr3	158351134	158351154	158351134	+	RAMPAGE_only	5	5	13	0.853740	3.026987	chr3	158351047	158351263	LINE|L1|L1MEj	+	chr3	158203071	158543687	RSRC1|ENST00000482822.2	+	158203071,158298038,158354856,158460934,158537091,158543334	158203245,158298075,158354908,158461003,158537198,158543687	0.923077
OCI_LY7	chr8	118282180	118282229	118282193	+	High_confidence	7	10	29	1.904498	4.235926	chr8	118282102	118282313	SINE|MIR|MIRc	-	chr8	118282260	118288356	AC023590.1|ENST00000449065.5	+	118282260,118284271,118284513,118288238	118282330,118284421,118284586,118288356	0.517241
OCI_LY7	chr1	148156118	148156132	148156118	+	High_confidence	11	11	26	1.707481	3.921030	chr1	148155782	148156403	LTR|ERV1|MER51D	+	chr1	148156100	148158464	MSTRG.4057.1	+	148156100,148156789	148156406,148158464	0.730769
OCI_LY7	chr6	106630466	106630497	106630496	-	High_confidence	5	6	13	0.853740	3.188722	chr6	106630134	106630534	LINE|L2|L2	+	chr6	106570770	106629498	RTN4IP1|NM_032730.5	-	106570770,106583327,106587678,106592163,106602873,106619201,106621424,106622817,106628747	106572103,106583420,106587862,106592300,106602922,106619326,106621493,106622969,106629498	0.615385
OCI_LY7	chr18	3297436	3297488	3297436	-	High_confidence	51	56	129	8.471732	4.520247	chr18	3296458	3297771	LINE|L1|L1PB3	+	chr18	3296181	3297504	MSTRG.31400.1	-	3296181	3297504	0.968992
OCI_LY7	chr16	57003700	57003727	57003726	+	High_confidence	4	4	14	0.919413	3.235926	chr16	57003639	57003837	LTR|ERVL|LTR16A1	+	chr16	57003852	57020936	NLRC5|ENST00000544641.5	+	57003852,57017073,57020700	57004095,57017188,57020936	0.857143
OCI_LY7	chr6	47252738	47252749	47252748	-	RAMPAGE_only	10	11	34	2.232860	4.003045	chr6	47252493	47252718	SINE|MIR|MIRb	-	chr6	47252280	47287385	MSTRG.58946.3	-	47252280,47283937	47253521,47287385	0.588235
OCI_LY7	chr3	183115765	183115800	183115765	-	High_confidence	2	2	10	0.656723	3.121928	chr3	183115570	183115868	SINE|Alu|AluSq2	+	chr3	183015217	183116075	MCCC1|ENST00000492597.5	-	183015217,183017265,183020129,183022416,183025754,183033990,183037217,183039025,183041566,183045412,183052158,183057310,183070998,183071209,183072365,183086692,183094558,183115473	183015566,183017337,183020237,183022554,183025804,183034077,183037434,183039135,183041750,183045540,183052240,183057422,183071120,183071357,183072487,183086788,183094605,183116075	1.000000
OCI_LY7	chr10	28282030	28282031	28282030	-	High_confidence	11	11	16	1.050757	3.452820	chr10	28281945	28282364	LTR|ERVL|LTR86A1	+	chr10	28054060	28282089	MPP7|ENST00000375719.7	-	28054060,28056479,28058494,28059649,28069771,28089670,28119650,28120193,28120593,28124030,28125009,28131559,28147482,28149981,28202152,28238567,28254773,28280099,28282009	28054244,28056623,28058603,28059743,28069852,28089841,28119715,28120390,28120668,28124116,28125091,28131691,28147563,28150059,28202271,28238735,28254876,28280140,28282089	0.750000
OCI_LY7	chr7	2242922	2242923	2242922	+	High_confidence	43	43	45	2.955255	4.888604	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.955556
OCI_LY7	chrX	7219194	7219198	7219194	+	High_confidence	9	12	24	1.576136	3.749903	chrX	7218896	7219402	LTR|ERVL|LTR69	+	chrX	7219430	7354643	STS|NM_000351.5	+	7219430,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7219686,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.625000
OCI_LY7	chr9	120926645	120926686	120926645	-	RAMPAGE_only	5	5	15	0.985085	3.139572	chr9	120926574	120926745	SINE|MIR|MIR3	+	chr9	120902392	120928769	MSTRG.69526.1	-	120902392,120909229,120911335,120913327,120914234,120923704,120925935	120905238,120909378,120911513,120913738,120914300,120923792,120928769	0.933333
OCI_LY7	chr2	64090430	64090442	64090441	-	High_confidence	46	48	107	7.026941	5.391900	chr2	64089803	64090773	LINE|L2|L2a	+	chr2	64078358	64091396	MSTRG.37719.1	-	64078358,64080588,64087856	64078546,64080711,64091396	0.523364
OCI_LY7	chr5	34244736	34244812	34244778	-	High_confidence	44	44	237	15.564345	6.075998	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34173659	34244796	MSTRG.53794.22	-	34173659,34175821,34179012,34182679,34200820,34218294,34239374,34244615	34175537,34175957,34179097,34182867,34200921,34218450,34239448,34244796	0.746835
OCI_LY7	chr21	45593653	45593667	45593653	+	High_confidence	59	61	101	6.632907	5.390283	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	0.910891
OCI_LY7	chr4	39032920	39032938	39032920	-	High_confidence	4	4	10	0.656723	3.121928	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	38993734	39032922	TMEM156|ENST00000344606.6	-	38993734,38998723,39032225,39032641	38993998,38998909,39032443,39032922	0.800000
OCI_LY7	chr12	52118182	52118216	52118182	-	High_confidence	2	2	8	0.525379	2.807355	chr12	52116006	52118404	LTR|ERV1|HERVE-int	-	chr12	52092567	52118517	MSTRG.15145.3	-	52092567,52094678,52104158,52108068,52115868	52093498,52094849,52106001,52108209,52118517	0.875000
OCI_LY7	chr9	137738517	137738574	137738556	+	High_confidence	9	9	38	2.495549	4.418723	chr9	137738221	137739080	LINE|L1|L1MB3	+	chr9	137738606	137754221	EHMT1|ENST00000495657.5	+	137738606,137743370,137743901,137752330,137754170	137738779,137743528,137744090,137752408,137754221	0.868421
OCI_LY7	chr14	106193221	106193222	106193221	+	High_confidence	11	11	12	0.788068	2.663533	chr14	106192967	106193706	LTR|ERVL-MaLR|MSTB-int	-	chr14	106193356	106210856	MSTRG.21687.2	+	106193356,106205075,106206077	106202463,106205151,106210856	0.916667
OCI_LY7	chr20	47412176	47412184	47412176	-	High_confidence	43	45	119	7.815009	5.586688	chr20	47412027	47412149	LTR|ERVL|LTR16E1	-	chr20	47391928	47412327	LINC01754|ENST00000437920.1	-	47391928,47397148,47411267,47412069	47392097,47397345,47411393,47412327	0.521008
OCI_LY7	chr13	26786003	26786007	26786003	-	High_confidence	360	432	522	34.280963	6.611655	chr13	26785433	26786198	LTR|ERV1|LTR1A2	-	chr13	26784715	26786017	MSTRG.17689.1	-	26784715	26786017	0.980843
OCI_LY7	chrX	96448088	96448089	96448088	+	RAMPAGE_only	10	12	12	0.788068	3.084963	chrX	96447914	96448206	SINE|Alu|AluY	-	chrX	96684662	97469838	DIAPH2|NM_007309.3	+	96684662,96735757,96738585,96758153,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348115,97383908,97429649,97469693	96685190,96735790,96738762,96758258,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247839,97348280,97384044,97429745,97469838	1.000000
OCI_LY7	chr1	174874418	174874439	174874418	+	High_confidence	244	275	834	54.770735	7.307051	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.715827
OCI_LY7	chr22	22865997	22866097	22866041	+	High_confidence	44	82	241	15.827035	5.688871	chr22	22865976	22866141	DNA|hAT-Charlie|MER5A1	-	chr22	22865874	22868550	MSTRG.44446.1	+	22865874	22868550	1.000000
OCI_LY7	chrX	57952031	57952054	57952031	-	High_confidence	13	13	28	1.838826	3.583617	chrX	57949804	57953027	LINE|L1|L1PA14	-	chrX	57951462	57952164	MSTRG.71582.1	-	57951462	57952164	0.750000
OCI_LY7	chr2	132147748	132147786	132147748	-	RAMPAGE_only	11	12	27	1.773153	4.103910	chr2	132147550	132148063	LTR|ERV1|LTR10A	-	chr2	132139217	132257969	MSTRG.39322.2	-	132139217,132147302,132150911,132154661,132156972,132257528	132139442,132148228,132150976,132154768,132157146,132257969	0.740741
OCI_LY7	chr21	33968463	33968481	33968480	-	High_confidence	17	17	47	3.086600	4.910660	chr21	33968191	33968612	LTR|ERVL-MaLR|MLT1J	-	chr21	33967100	33968573	AP000569.1|ENST00000607953.1	-	33967100,33968232	33967350,33968573	0.595745
OCI_LY7	chr11	59818846	59818883	59818882	+	High_confidence	16	17	39	2.561221	4.496815	chr11	59818643	59819381	LTR|ERV1|LTR78	+	chr11	59818384	59838494	MSTRG.11392.1	+	59818384,59837769	59819383,59838494	0.948718
OCI_LY7	chr8	11394085	11394109	11394095	+	High_confidence	5	8	19	1.247775	3.721612	chr8	11393892	11396004	LTR|ERV1|MER31-int	-	chr8	11394123	11438658	FAM167A-AS1|ENST00000624614.1	+	11394123,11401065,11404540,11433919,11434829,11438039,11438435	11394335,11401165,11404702,11434135,11435102,11438210,11438658	0.578947
OCI_LY7	chr11	9987410	9987415	9987410	-	RAMPAGE_only	5	5	11	0.722396	3.095795	chr11	9985621	9989429	LINE|L1|L1PA17	+	chr11	9853706	9993104	SBF2|ENST00000420722.2	-	9853706,9856457,9858225,9895942,9961956,9963772,9968340,9989496,9992989	9853712,9856720,9858396,9896011,9962106,9963882,9968545,9989595,9993104	0.909091
OCI_LY7	chr6	26521719	26521804	26521746	-	High_confidence	15	17	64	4.203030	4.930071	chr6	26521567	26521696	LINE|L1|L1ME5	-	chr6	26487713	26521793	MSTRG.57875.1	-	26487713,26488002,26521508	26487786,26488144,26521793	0.687500
OCI_LY7	chr9	133703446	133703451	133703450	-	High_confidence	6	6	12	0.788068	3.022055	chr9	133703436	133703570	SINE|MIR|MIR	-	chr9	133654590	133703701	MSTRG.70223.3	-	133654590,133666734,133670583,133671534,133685192,133690379,133694257,133696222,133702300,133703420	133664014,133666870,133670752,133671697,133685286,133690527,133694371,133696361,133703029,133703701	0.916667
OCI_LY7	chr3	139344535	139344548	139344535	+	High_confidence	9	9	31	2.035843	3.343631	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.806452
OCI_LY7	chr6	34485030	34485061	34485038	+	High_confidence	38	40	234	15.367328	6.101724	chr6	34484812	34485093	LINE|L2|L2a	-	chr6	34485069	34529552	MSTRG.58423.4	+	34485069,34526242,34527331,34528641,34529396	34485144,34526368,34527488,34528877,34529552	0.769231
OCI_LY7	chr21	42524962	42524994	42524975	+	High_confidence	6	8	31	2.035843	4.155652	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42525095	42581434	MSTRG.43868.9	+	42525095,42525775,42534697,42535471,42539511,42542403,42543435,42547102,42554061,42558957,42562077,42563814,42564707,42565826,42566984,42568359,42574817,42579735,42580344	42525179,42525857,42534830,42535550,42539647,42542480,42543602,42547140,42554142,42559089,42562168,42563877,42564793,42565875,42567058,42568438,42574915,42579800,42581434	0.806452
OCI_LY7	chr8	11493990	11494028	11494007	+	High_confidence	54	54	289	18.979307	6.753594	chr8	11493862	11494036	SINE|MIR|MIRb	-	chr8	11494011	11564599	BLK|NM_001715.2	+	11494011,11543223,11546051,11548031,11549023,11550158,11554742,11555331,11556657,11557961,11561301,11562978,11563902	11494591,11543347,11546103,11548125,11549122,11550262,11554889,11555484,11556837,11558038,11561452,11563110,11564599	0.795848
OCI_LY7	chr8	98045644	98045660	98045655	+	High_confidence	7	7	22	1.444792	4.004886	chr8	98045692	98046014	SINE|Alu|AluJb	+	chr8	98045631	98047442	MSTRG.66168.1	+	98045631	98047442	1.000000
OCI_LY7	chr19	571899	571919	571918	-	High_confidence	4	4	10	0.656723	2.947703	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.900000
OCI_LY7	chr20	45419832	45419833	45419832	+	High_confidence	16	21	24	1.576136	3.099436	chr20	45419784	45420019	SINE|MIR|MIRb	+	chr20	45419905	45426018	PIGT|ENST00000639872.1	+	45419905,45420331,45420507,45421382,45424215,45424495,45425573	45420223,45420429,45420693,45421583,45424381,45424579,45426018	0.875000
OCI_LY7	chr17	59892716	59892746	59892716	-	High_confidence	7	7	31	2.035843	4.116265	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.677419
OCI_LY7	chr17	4523321	4523362	4523342	-	High_confidence	13	15	59	3.874668	5.231756	chr17	4523156	4523454	SINE|Alu|AluSx1	+	chr17	4518201	4523565	MSTRG.27716.2	-	4518201,4522800	4520829,4523565	0.779661
OCI_LY7	chr14	22557397	22557455	22557454	+	RAMPAGE_only	10	10	91	5.976183	4.801467	chr14	22557436	22557541	SINE|MIR|MIRc	+	chr14	22555976	22560367	MSTRG.19283.1	+	22555976	22560367	0.978022
OCI_LY7	chr3	183116041	183116089	183116041	-	High_confidence	24	24	55	3.611979	4.288989	chr3	183115868	183116225	LTR|ERV1|MER51E	-	chr3	183015217	183116075	MCCC1|ENST00000492597.5	-	183015217,183017265,183020129,183022416,183025754,183033990,183037217,183039025,183041566,183045412,183052158,183057310,183070998,183071209,183072365,183086692,183094558,183115473	183015566,183017337,183020237,183022554,183025804,183034077,183037434,183039135,183041750,183045540,183052240,183057422,183071120,183071357,183072487,183086788,183094605,183116075	0.981818
OCI_LY7	chr9	131676834	131676841	131676834	-	High_confidence	136	191	424	27.845074	7.116525	chr9	131676817	131677003	DNA|hAT-Charlie|MER5A	+	chr9	131626159	131676841	MSTRG.70131.8	-	131626159,131627912,131628548,131629101,131638634,131643238,131650128,131650809,131676556	131626422,131628096,131628672,131629254,131638791,131643417,131650242,131650949,131676841	0.660377
OCI_LY7	chr5	21341806	21341818	21341810	+	High_confidence	3	3	9	0.591051	2.750000	chr5	21341224	21342284	LTR|ERV1|LTR12E	+	chr5	21341832	21544777	GUSBP1|ENST00000508260.5	+	21341832,21405684,21459677,21461782,21491320,21495097,21497021,21501691,21544718	21341976,21405760,21459743,21461866,21491508,21495182,21497196,21501826,21544777	0.666667
OCI_LY7	chr1	112935988	112936034	112936000	-	High_confidence	9	10	24	1.576136	3.553509	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	0.708333
OCI_LY7	chr15	66502611	66502741	66502611	-	High_confidence	48	49	451	29.618227	6.439181	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.900222
OCI_LY7	chr2	89145585	89145595	89145594	+	RAMPAGE_only	4	7	14	0.919413	3.392747	chr2	89143813	89145909	LTR|ERVL|MER70-int	-	chr2	89142173	89162963	MSTRG.38470.1	+	89142173,89162283	89145721,89162963	0.571429
OCI_LY7	chr15	67783427	67783428	67783427	-	RAMPAGE_only	8	8	12	0.788068	3.459432	chr15	67783299	67783734	LINE|L2|L2c	+	chr15	67782369	67784842	MSTRG.23261.1	-	67782369	67784842	0.750000
OCI_LY7	chr13	30377180	30377202	30377191	-	High_confidence	213	217	565	37.104874	6.247586	chr13	30377180	30377360	DNA|hAT-Charlie|MER5A	+	chr13	30370471	30377145	MSTRG.17792.12	-	30370471,30372284,30375466,30376826	30370525,30372374,30375776,30377145	0.911504
OCI_LY7	chr2	177222558	177222604	177222558	+	RAMPAGE_only	1	1	10	0.656723	2.947703	chr2	177222525	177222789	SINE|Alu|AluJb	+	chr2	177219092	177223958	MSTRG.40116.7	+	177219092,177222059	177221976,177223958	0.900000
OCI_LY7	chr3	187021850	187021852	187021850	+	High_confidence	242	373	522	34.280963	6.971100	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.814176
OCI_LY7	chr16	58755976	58755977	58755976	-	RAMPAGE_only	12	12	12	0.788068	3.084963	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
OCI_LY7	chr12	125149711	125149755	125149711	-	High_confidence	73	74	261	17.140482	6.440158	chr12	125149471	125149945	LTR|ERVL-MaLR|MLT1K	-	chr12	125140279	125149747	MSTRG.17370.1	-	125140279	125149747	0.980843
OCI_LY7	chr13	111184173	111184174	111184173	+	RAMPAGE_only	17	17	17	1.116430	3.734522	chr13	111183991	111184342	LTR|ERVL-MaLR|THE1C	+	chr13	111186825	111305734	ARHGEF7|NM_001113513.1	+	111186825,111205288,111209871,111217678,111233204,111243871,111244198,111267547,111273813,111274730,111275531,111277586,111280271,111280537,111283138,111286146,111288353,111300747,111301477,111302990	111186990,111205373,111210002,111217880,111233293,111243966,111244294,111267670,111273952,111274790,111275678,111277673,111280350,111280677,111283363,111286240,111288443,111300847,111301532,111305734	0.941176
OCI_LY7	chr15	31459175	31459178	31459177	-	High_confidence	81	107	122	8.012026	5.387752	chr15	31458887	31459627	LINE|L1|L1MC3	-	chr15	31458655	31459277	MSTRG.21974.1	-	31458655	31459277	0.885246
OCI_LY7	chr2	46984171	46984174	46984173	-	High_confidence	45	53	75	4.925426	4.886283	chr2	46984055	46984227	SINE|MIR|MIR	-	chr2	46982315	46984603	MSTRG.37428.1	-	46982315	46984603	0.973333
OCI_LY7	chr6	145736011	145736034	145736020	-	High_confidence	7	9	30	1.970170	3.923231	chr6	145735975	145736071	SINE|MIR|MIR3	+	chr6	145625303	145735855	EPM2A|NM_005670.3	-	145625303,145635244,145686121,145735197	145627693,145635486,145686296,145735855	0.700000
OCI_LY7	chr7	1176230	1176257	1176230	-	High_confidence	5	7	27	1.773153	3.176992	chr7	1175827	1176361	LTR|ERVL|ERV3-16A3_I-int	-	chr7	1175539	1176222	MSTRG.61240.1	-	1175539	1176222	0.925926
OCI_LY7	chr3	134485414	134485490	134485449	-	High_confidence	9	10	57	3.743324	5.030395	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.789474
OCI_LY7	chr2	119311885	119311896	119311895	-	RAMPAGE_only	31	34	49	3.217945	4.466451	chr2	119311891	119312118	SINE|MIR|MIRb	+	chr2	119302216	119366742	C2orf76|NM_001322329.1	-	119302216,119311621,119317465,119321153,119339826,119340158,119366435	119302548,119311703,119317503,119321204,119339971,119340361,119366742	0.795918
OCI_LY7	chr4	83437342	83437381	83437374	-	RAMPAGE_only	28	40	135	8.865766	6.095529	chr4	83437273	83437338	DNA|hAT-Charlie|Charlie4z	-	chr4	83407342	83455804	HELQ|ENST00000508591.5	-	83407342,83416730,83418092,83421562,83425993,83427562,83429523,83431663,83432125,83436857,83439862,83441304,83446013,83446834,83448782,83453230,83455396	83407560,83416865,83418206,83421736,83426092,83427720,83429746,83431768,83432267,83437097,83440008,83441403,83446086,83447035,83448961,83453945,83455804	0.822222
OCI_LY7	chr22	45620853	45620854	45620853	-	RAMPAGE_only	16	16	19	1.247775	3.794653	chr22	45620676	45621053	LTR|ERVL-MaLR|THE1D	-	chr22	45604431	45605647	LINC01589|NR_131244.1	-	45604431,45605400	45604758,45605647	0.526316
OCI_LY7	chr5	76874985	76875002	76874985	+	High_confidence	28	29	90	5.910511	5.683288	chr5	76874890	76875187	SINE|Alu|AluYm1	-	chr5	76875300	76921026	S100Z|ENST00000613039.1	+	76875300,76877673,76920716	76875500,76877834,76921026	0.666667
OCI_LY7	chr7	107580245	107580267	107580264	+	High_confidence	180	182	882	57.923007	6.435490	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.930839
OCI_LY7	chr2	47695416	47695529	47695421	+	High_confidence	401	410	1583	103.959320	5.815465	chr2	47695264	47695601	LTR|ERV1|MER61E	-	chr2	47695529	47709833	MSH6|ENST00000607272.2	+	47695529,47708182	47696097,47709833	0.970941
OCI_LY7	chr10	124143864	124143894	124143893	+	High_confidence	19	21	59	3.874668	5.280226	chr10	124143846	124144088	LINE|CR1|L3	-	chr10	124143894	124146040	MSTRG.9883.1	+	124143894	124146040	0.983051
OCI_LY7	chr11	66458046	66458047	66458046	+	High_confidence	10	10	10	0.656723	2.721928	chr11	66457988	66458169	SINE|Alu|AluJo	-	chr11	66458157	66459788	MSTRG.11846.1	+	66458157	66459788	1.000000
OCI_LY7	chr12	121664089	121664125	121664124	+	High_confidence	20	22	79	5.188115	5.341018	chr12	121664112	121664293	LTR|ERVL-MaLR|MLT1K	+	chr12	121664117	121665158	MSTRG.17119.1	+	121664117	121665158	0.721519
OCI_LY7	chr17	38868577	38868644	38868643	-	RAMPAGE_only	16	16	49	3.217945	4.178699	chr17	38868508	38868597	SINE|MIR|MIRc	-	chr17	38847866	38853843	RPL23|ENST00000479035.6	-	38847866,38850361,38852603,38853021,38853697	38850214,38850475,38852732,38853105,38853843	0.551020
OCI_LY7	chr21	29077437	29077487	29077486	+	High_confidence	18	18	45	2.955255	4.225185	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077470	29109791	MAP3K7CL|NM_001286623.1	+	29077470,29080551,29085812,29091500,29091667,29092438,29109039	29077713,29080708,29085917,29091576,29091761,29092581,29109791	0.555556
OCI_LY7	chr3	16511147	16511166	16511147	-	RAMPAGE_only	3	3	11	0.722396	2.913977	chr3	16510634	16511545	LINE|L1|L1ME2z	+	chr3	16378094	16512904	RFTN1|ENST00000449415.5	-	16378094,16409374,16433850,16493724,16512783	16378102,16409483,16434037,16493877,16512904	0.636364
OCI_LY7	chr13	50756306	50756339	50756309	+	High_confidence	24	29	86	5.647822	4.954601	chr13	50753867	50757249	LINE|L1|L1PA16	-	chr13	50756320	50756887	MSTRG.18441.1	+	50756320	50756887	0.895349
OCI_LY7	chr2	47695707	47695822	47695739	+	High_confidence	162	164	1155	75.851557	6.264406	chr2	47695601	47695914	SINE|Alu|AluY	-	chr2	47695815	47757793	MSH6|ENST00000454137.5	+	47695815,47708208,47737390,47757688	47696097,47708430,47737506,47757793	0.846753
OCI_LY7	chr18	49023511	49023530	49023525	-	High_confidence	20	27	96	6.304545	5.447790	chr18	49023218	49023603	LTR|ERVL-MaLR|MLT1G3	+	chr18	48995737	49023585	MSTRG.32171.1	-	48995737,49022964	48995793,49023585	0.843750
OCI_LY7	chr2	171433147	171433190	171433189	-	High_confidence	7	7	30	1.970170	4.306257	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.566667
OCI_LY7	chr6	43013392	43013393	43013392	-	High_confidence	37	38	51	3.349290	4.749275	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.980392
OCI_LY7	chr21	41836882	41836894	41836887	-	High_confidence	12	12	33	2.167187	4.515320	chr21	41836880	41837100	LINE|RTE-X|L4_B_Mam	+	chr21	41825976	41836894	PRDM15|ENST00000489661.5	-	41825976,41828165,41835436,41836112,41836467	41826054,41828333,41835524,41836207,41836894	0.818182
OCI_LY7	chr6	26956181	26956182	26956181	-	High_confidence	314	330	348	22.853976	6.007253	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26955598	26955966	MSTRG.57934.1	-	26955598	26955966	0.870690
OCI_LY7	chr16	30379934	30379943	30379942	-	RAMPAGE_only	6	10	25	1.641809	3.003074	chr16	30379701	30379906	SINE|Alu|AluSx1	-	chr16	30378183	30382370	SEPT1|ENST00000573615.5	-	30378183,30378609,30379017,30379434,30379765,30381126,30381759,30382092,30382274	30378520,30378700,30379183,30379534,30380033,30381473,30381883,30382179,30382370	1.000000
OCI_LY7	chr21	42065581	42065612	42065606	+	RAMPAGE_only	13	13	29	1.904498	3.967720	chr21	42065526	42065831	SINE|Alu|AluSc5	-	chr21	42062526	42069149	MSTRG.43845.1	+	42062526,42067474	42066148,42069149	0.827586
OCI_LY7	chr8	119875396	119875416	119875396	+	RAMPAGE_only	1	1	7	0.459706	2.584963	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.714286
OCI_LY7	chr5	156893760	156893761	156893760	+	High_confidence	8	8	10	0.656723	3.121928	chr5	156893654	156894348	LTR|Gypsy|MamGypLTR1b	+	chr5	156893766	156894235	MSTRG.56520.1	+	156893766	156894235	0.500000
OCI_LY7	chr8	119917552	119917567	119917566	+	RAMPAGE_only	5	5	10	0.656723	2.725481	chr8	119917331	119918257	LTR|ERVK|LTR5_Hs	+	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.500000
OCI_LY7	chr6	26956526	26956599	26956551	-	High_confidence	20	20	140	9.194128	6.170235	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.571429
OCI_LY7	chr6	31400605	31400620	31400617	-	High_confidence	13	14	59	3.874668	4.103088	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31394288	31400637	MSTRG.58191.1	-	31394288,31398058	31395444,31400637	0.898305
OCI_LY7	chr2	47737393	47737408	47737393	+	RAMPAGE_only	2	4	9	0.591051	2.725481	chr2	47737361	47737528	SINE|Alu|AluJr	-	chr2	47783081	47810101	MSH6|ENST00000234420.9	+	47783081,47790926,47795893,47798610,47803419,47804909,47805617,47806203,47806451,47806778	47783493,47791123,47796063,47801155,47803685,47805027,47805707,47806358,47806651,47810101	1.000000
OCI_LY7	chr4	70676950	70677041	70676950	-	RAMPAGE_only	15	16	67	4.400047	4.414668	chr4	70676811	70677107	SINE|Alu|AluSz	-	chr4	70655540	70678486	MSTRG.51559.1	-	70655540,70657210,70662091,70666426,70676882	70656539,70657291,70662215,70666514,70678486	1.000000
OCI_LY7	chr12	125149913	125149914	125149913	+	High_confidence	282	285	376	24.692801	5.506632	chr12	125149471	125149945	LTR|ERVL-MaLR|MLT1K	-	chr12	125150057	125151394	AC122688.2|ENST00000543922.1	+	125150057,125151337	125150585,125151394	0.912234
OCI_LY7	chr9	128921504	128921589	128921504	+	High_confidence	35	35	227	14.907622	6.252971	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921591	128942038	PHYHD1|ENST00000353176.9	+	128921591,128921929,128922282,128927037,128933781,128934010,128936447,128937756,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128937778,128940497,128940715,128941571,128942038	0.740088
OCI_LY7	chr3	133477582	133477657	133477656	-	High_confidence	89	91	184	12.083711	5.492654	chr3	133477512	133477610	LINE|L2|L2b	-	chr3	133473711	133478294	MSTRG.49029.1	-	133473711	133478294	0.978261
OCI_LY7	chr15	22758438	22758465	22758438	+	High_confidence	18	18	85	5.582149	5.490894	chr15	22758208	22758505	SINE|Alu|AluYm1	+	chr15	22758492	22764516	AC138649.1|ENST00000618814.1	+	22758492,22758818,22764223	22758525,22758921,22764516	0.670588
OCI_LY7	chr14	100066439	100066440	100066439	+	High_confidence	8	8	11	0.722396	2.646439	chr14	100066222	100066467	SINE|MIR|MIRc	-	chr14	100066436	100128581	EVL|ENST00000557153.5	+	100066436,100084686,100097480,100123538,100126706,100128518	100066487,100084855,100097658,100123602,100126771,100128581	0.545455
OCI_LY7	chr5	33400921	33400924	33400923	+	RAMPAGE_only	7	13	14	0.919413	3.180833	chr5	33400728	33401119	LTR|ERVL-MaLR|THE1D	+	chr5	33440695	33468091	TARS|NM_001258437.1	+	33440695,33441045,33445323,33448540,33453288,33454944,33455586,33456001,33456148,33457256,33458565,33459694,33460901,33461157,33461666,33461905,33462098,33463752,33466870,33467559	33440791,33441143,33445404,33448731,33453412,33455066,33455704,33456066,33456227,33457403,33458664,33459861,33461064,33461295,33461744,33462006,33462203,33463825,33466985,33468091	0.785714
OCI_LY7	chr5	171400153	171400187	171400153	+	RAMPAGE_only	3	4	31	2.035843	4.280226	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171407492	171410884	NPM1|ENST00000524204.1	+	171407492,171410526	171407774,171410884	0.645161
OCI_LY7	chr1	171251892	171251900	171251892	-	High_confidence	11	11	21	1.379119	3.884184	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171247579	171251794	AL445673.1|ENST00000455124.2	-	171247579,171251522	171247723,171251794	0.666667
OCI_LY7	chr5	77491284	77491317	77491284	-	High_confidence	5	5	19	1.247775	3.905765	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77453865	77491285	WDR41|ENST00000504895.5	-	77453865,77459061,77463094,77464760,77489456,77491192	77453928,77459124,77463226,77464809,77489572,77491285	0.578947
OCI_LY7	chr7	154928503	154928504	154928503	+	High_confidence	14	14	21	1.379119	3.422578	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.714286
OCI_LY7	chr4	102431244	102431249	102431248	-	High_confidence	6	11	18	1.182102	3.086049	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.888889
OCI_LY7	chr15	59399621	59399626	59399625	+	High_confidence	15	15	30	1.970170	3.481562	chr15	59399466	59399701	LINE|L2|L2a	-	chr15	59399650	59460115	MSTRG.23013.3	+	59399650,59402275,59458549,59459932	59399744,59402358,59458646,59460115	0.500000
OCI_LY7	chr16	4355592	4355593	4355592	-	High_confidence	424	427	428	28.107763	4.557307	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.946262
OCI_LY7	chr5	154038408	154038409	154038408	-	High_confidence	23	25	26	1.707481	3.543465	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.653846
OCI_LY7	chr7	155652433	155652456	155652455	+	RAMPAGE_only	397	403	621	40.782525	6.305717	chr7	155652206	155652455	DNA|hAT-Charlie|MER58A	-	chr7	155644701	155781479	MSTRG.64561.3	+	155644701,155665174,155672866,155678607,155680589,155684932,155700772,155706859,155711202,155718384,155737529,155738059,155739714,155741818,155744960,155763808,155766466,155774558,155774992	155644919,155665253,155672915,155678684,155680908,155685052,155700944,155707068,155711455,155718443,155737662,155738403,155740026,155742106,155745602,155764018,155766655,155774647,155781479	0.979066
OCI_LY7	chr1	66841075	66841094	66841093	-	RAMPAGE_only	5	5	18	1.182102	3.794653	chr1	66840708	66841531	LTR|ERVL|ERVL-B4-int	-	chr1	66837606	66862303	WDR78|ENST00000531552.1	-	66837606,66840468,66862146	66837796,66840671,66862303	0.888889
OCI_LY7	chrX	16712928	16712959	16712932	-	High_confidence	7	7	22	1.444792	3.879664	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.909091
OCI_LY7	chr13	46374832	46374833	46374832	-	RAMPAGE_only	978	983	1101	72.305250	7.496695	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46371940	46378645	RUBCNL|ENST00000439642.1	-	46371940,46377889,46378446	46372597,46378005,46378645	0.812897
OCI_LY7	chr4	112287390	112287468	112287442	+	RAMPAGE_only	48	65	200	13.134469	5.976767	chr4	112287055	112287550	DNA|hAT-Charlie|MER1A	-	chr4	112285924	112288344	MSTRG.52309.1	+	112285924	112288344	0.990000
OCI_LY7	chr17	68180703	68180708	68180706	+	High_confidence	273	299	468	30.734657	5.676973	chr17	68179673	68181122	LTR|ERV1|LTR12C	+	chr17	68180705	68192802	MSTRG.30511.2	+	68180705,68186736	68183499,68192802	0.980769
OCI_LY7	chr14	95664755	95664871	95664816	+	High_confidence	135	139	741	48.663207	7.546733	chr14	95664736	95664975	LTR|ERVL-MaLR|MLT1H	-	chr14	95664861	95670414	TCL6|ENST00000486671.1	+	95664861,95668125	95665076,95670414	0.529015
OCI_LY7	chr8	85187671	85187701	85187677	+	High_confidence	31	31	140	9.194128	5.719656	chr8	85186969	85188500	LINE|L1|L1M1	-	chr8	85187674	85214518	E2F5|NM_001083589.1	+	85187674,85202146,85203093,85206176,85207424,85209141,85212156,85213752	85187796,85202256,85203255,85206220,85207489,85209409,85212204,85214518	0.650000
OCI_LY7	chr4	4342083	4342085	4342084	+	RAMPAGE_only	6	9	10	0.656723	2.947703	chr4	4341935	4342312	LTR|ERVL-MaLR|MSTC	+	chr4	4348139	4419058	NSG1|ENST00000421177.6	+	4348139,4380982,4385059,4385472,4385856,4387603,4391474,4409572,4417234	4348471,4381073,4385201,4385555,4387173,4387758,4391591,4409683,4419058	0.700000
OCI_LY7	chr1	226349387	226349415	226349387	+	High_confidence	13	13	47	3.086600	4.203867	chr1	226349380	226349531	SINE|Alu|AluJr	-	chr1	226349398	226350985	MSTRG.6393.1	+	226349398	226350985	1.000000
OCI_LY7	chr1	194289648	194289707	194289696	-	High_confidence	156	182	692	45.445262	7.133615	chr1	194289619	194290204	LTR|ERV1|LTR77	+	chr1	194155679	194289753	MSTRG.5485.1	-	194155679,194167494,194232135,194289595	194158168,194167715,194232333,194289753	0.618497
OCI_LY7	chr22	24011756	24011757	24011756	+	High_confidence	6	6	6	0.394034	2.584963	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
OCI_LY7	chr7	6590257	6590317	6590269	+	High_confidence	4	4	17	1.116430	3.263933	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.705882
OCI_LY7	chr2	121650547	121650582	121650581	-	High_confidence	6	6	23	1.510464	4.088779	chr2	121650281	121650581	SINE|Alu|AluJb	-	chr2	121337775	121649587	CLASP1|ENST00000409078.7	-	121337775,121347037,121348511,121363171,121365093,121367587,121377498,121387121,121387762,121397139,121398321,121401508,121401867,121404370,121407470,121409023,121410865,121425138,121427403,121430072,121447336,121448275,121448952,121450912,121451789,121457686,121458839,121459979,121461100,121462531,121469807,121503166,121515664,121525844,121527798,121528676,121530246,121605700,121649371	121340947,121347154,121348718,121363300,121365284,121367831,121377649,121387228,121387906,121397283,121398400,121401672,121401870,121404434,121407715,121409047,121410969,121425306,121427430,121430177,121447507,121448325,121449120,121450990,121451849,121457757,121458975,121460125,121461193,121462605,121469960,121503234,121515762,121525920,121527890,121528780,121530325,121606180,121649587	0.565217
OCI_LY7	chr19	49328490	49328500	49328497	+	High_confidence	4	4	17	1.116430	3.572469	chr19	49328466	49328629	LINE|L2|L2a	-	chr19	49328152	49340466	MSTRG.35379.2	+	49328152,49335494,49335713,49336908,49337146,49337924,49338699,49339329,49340250	49328922,49335609,49335786,49337033,49337221,49338029,49338936,49339413,49340466	0.882353
OCI_LY7	chr2	39852012	39852038	39852037	+	RAMPAGE_only	8	8	16	1.050757	3.189898	chr2	39852018	39852078	SINE|5S-Deu-L2|AmnSINE1	+	chr2	39917633	40255209	SLC8A1-AS1|NR_038441.1	+	39917633,39922848,40104908,40251683,40254419	39917659,39922889,40104962,40251774,40255209	0.500000
OCI_LY7	chr12	122064281	122064309	122064308	+	RAMPAGE_only	8	8	24	1.576136	3.970176	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.708333
OCI_LY7	chr12	110049153	110049167	110049153	-	High_confidence	31	49	65	4.268702	4.476105	chr12	110049151	110049299	LTR|ERV1|LTR2B	+	chr12	110041894	110049285	C12orf76|ENST00000549724.1	-	110041894,110048362,110049056	110042459,110048870,110049285	0.876923
OCI_LY7	chr10	133388374	133388393	133388392	+	High_confidence	6	8	14	0.919413	3.235926	chr10	133388146	133388473	LINE|L1|L1PA13	-	chr10	133388413	133420219	MSTRG.10029.11	+	133388413,133391311,133395712,133396162,133398434,133399169,133399528,133401528,133402148,133402691,133419479,133420025	133389747,133391428,133395777,133396267,133398515,133399226,133399653,133401590,133402245,133402773,133419592,133420219	0.857143
OCI_LY7	chr8	28084081	28084120	28084119	-	High_confidence	9	9	43	2.823911	4.766625	chr8	28084027	28084332	SINE|Alu|AluSx1	+	chr8	28021963	28083871	NUGGC|ENST00000413272.6	-	28021963,28026961,28029265,28030309,28031242,28033539,28041050,28045526,28047506,28055964,28058257,28060425,28064521,28067513,28068215,28069543,28070251,28074367,28083774	28023462,28027052,28029402,28030418,28031381,28033697,28041215,28045660,28047612,28056054,28058276,28060601,28064731,28067744,28068438,28069652,28070356,28074456,28083871	0.558140
OCI_LY7	chr11	66372479	66372480	66372479	-	High_confidence	20	23	25	1.641809	3.381620	chr11	66372296	66372448	DNA|hAT-Tip100|ORSL-2b	-	chr11	66362520	66372476	SLC29A2|NM_001300868.1	-	66362520,66364224,66365935,66366125,66366430,66367463,66367771,66368536,66369059,66369368,66371243,66371562,66372009,66372357	66363547,66364424,66366021,66366231,66366564,66367548,66367869,66368671,66369199,66369532,66371325,66371646,66372265,66372476	0.800000
OCI_LY7	chr11	17352281	17352295	17352281	+	High_confidence	4	4	11	0.722396	3.121928	chr11	17352168	17352474	SINE|Alu|AluY	-	chr11	17352182	17377341	MSTRG.10738.3	+	17352182,17356650,17367008,17368866,17372005	17354320,17357001,17367347,17368964,17377341	0.909091
OCI_LY7	chr9	134930985	134931018	134930985	+	High_confidence	26	26	47	3.086600	4.041959	chr9	134930875	134931185	SINE|Alu|AluY	-	chr9	134930759	134933866	MSTRG.70249.1	+	134930759	134933866	1.000000
OCI_LY7	chr1	86832504	86832560	86832522	-	High_confidence	95	97	465	30.537640	6.933795	chr1	86832459	86832932	LTR|ERVL-MaLR|MLT1D	+	chr1	86571180	86832562	MSTRG.2949.1	-	86571180,86647936,86650239,86693162,86697034,86697698,86832409	86571408,86648047,86650381,86693290,86697233,86697762,86832562	0.632258
OCI_LY7	chr19	39335655	39335673	39335655	-	High_confidence	6	6	13	0.853740	2.918296	chr19	39335628	39335746	DNA|hAT-Tip100|MER91A	-	chr19	39328358	39335531	GMFG|ENST00000596583.5	-	39328358,39328999,39329547,39333076,39335434	39328548,39329073,39329626,39333126,39335531	0.615385
OCI_LY7	chr10	102449836	102449845	102449836	+	High_confidence	8	8	25	1.641809	4.334963	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.680000
OCI_LY7	chr12	109053951	109053957	109053951	-	High_confidence	48	49	125	8.209043	5.128694	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.848000
OCI_LY7	chr6	88179646	88179668	88179666	-	High_confidence	7	10	17	1.116430	3.375000	chr6	88179609	88179800	LTR|ERVL|LTR33A_	-	chr6	88176905	88179830	MSTRG.59490.1	-	88176905,88179690	88178434,88179830	0.647059
OCI_LY7	chr4	173369515	173369534	173369526	-	High_confidence	10	10	36	2.364204	4.329240	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363779	173370446	AC097534.2|ENST00000609153.1	-	173363779,173369433,173370291	173364198,173369610,173370446	0.500000
OCI_LY7	chr2	113863289	113863324	113863323	-	RAMPAGE_only	6	7	27	1.773153	3.884155	chr2	113863124	113863438	LINE|L1|HAL1	-	chr2	113831187	113843356	AC104653.1|ENST00000446401.1	-	113831187,113831529,113843263	113831428,113831585,113843356	0.814815
OCI_LY7	chr14	95725387	95725428	95725427	+	High_confidence	18	18	34	2.232860	3.139262	chr14	95725236	95725714	LINE|L1|L1M1	-	chr14	95725418	95757596	MSTRG.21309.5	+	95725418,95755244	95725586,95757596	0.941176
OCI_LY7	chr4	39032817	39032824	39032823	-	High_confidence	9	9	16	1.050757	2.656565	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	38993734	39032922	TMEM156|ENST00000344606.6	-	38993734,38998723,39032225,39032641	38993998,38998909,39032443,39032922	0.687500
OCI_LY7	chr10	98162878	98162907	98162902	+	High_confidence	22	22	71	4.662736	5.073973	chr10	98162713	98162997	SINE|Alu|AluJb	-	chr10	98162882	98244892	MSTRG.9259.6	+	98162882,98163292,98186466,98208100,98231511,98234445,98235424,98236023,98244090	98162975,98163397,98186563,98209899,98231687,98234516,98235520,98236164,98244892	0.845070
OCI_LY7	chr1	148279251	148279284	148279273	+	High_confidence	40	41	121	7.946354	5.903949	chr1	148279033	148279814	LINE|L1|L1MEc	+	chr1	148279260	148288909	MSTRG.4073.1	+	148279260,148287689	148279531,148288909	0.776860
OCI_LY7	chr7	107091677	107091731	107091730	+	RAMPAGE_only	6	6	17	1.116430	3.572469	chr7	107091484	107091866	DNA|TcMar-Tigger|MamRep137	+	chr7	107044732	107161811	PRKAR2B|NM_002736.2	+	107044732,107070280,107121951,107128211,107140846,107146307,107150921,107153176,107156983,107157185,107159448	107045214,107070316,107122004,107128295,107140953,107146461,107151023,107153251,107157049,107157324,107161811	0.588235
OCI_LY7	chr2	198700562	198700644	198700636	+	High_confidence	33	38	178	11.689677	5.201791	chr2	198700564	198700660	LTR|ERVL|LTR33	-	chr2	198700560	198701720	MSTRG.40511.1	+	198700560	198701720	0.921348
OCI_LY7	chr9	37187476	37187488	37187476	+	RAMPAGE_only	43	46	84	5.516477	4.675345	chr9	37187210	37187548	DNA|hAT-Charlie|MER1B	-	chr9	37144931	37356980	ZCCHC7|ENST00000488607.5	+	37144931,37147361,37302187,37304187,37305543,37327798,37349356,37354709,37356834	37144997,37147445,37302231,37304313,37305714,37327834,37349452,37354824,37356980	0.904762
OCI_LY7	chr5	128082249	128082276	128082275	-	High_confidence	4	5	18	1.182102	3.836592	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	128024026	128082960	LINC01184|ENST00000508878.5	-	128024026,128061143,128076946,128081972,128082734	128024298,128061244,128077093,128082194,128082960	0.500000
OCI_LY7	chr5	124725062	124725121	124725085	-	High_confidence	17	17	116	7.617992	6.011955	chr5	124724874	124725417	LINE|L2|L2a	+	chr5	124648262	124725108	MSTRG.55623.10	-	124648262,124701013,124724954	124649697,124701269,124725108	0.663793
OCI_LY7	chr17	82915667	82915684	82915669	+	RAMPAGE_only	12	18	28	1.838826	4.028605	chr17	82915582	82915670	LTR|ERVL-MaLR|MLT1I	-	chr17	82926865	82929259	TBCD|ENST00000570679.1	+	82926865,82927904,82929112	82927323,82927988,82929259	0.500000
OCI_LY7	chr22	36481305	36481353	36481352	-	High_confidence	7	7	18	1.182102	3.499228	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.833333
OCI_LY7	chr4	174928405	174928475	174928436	+	High_confidence	15	15	124	8.143371	5.655731	chr4	174928145	174928537	LTR|ERVL|LTR21C	-	chr4	174928119	174930586	MSTRG.53209.1	+	174928119	174930586	1.000000
OCI_LY7	chr8	102275537	102275563	102275537	-	RAMPAGE_only	3	3	15	0.985085	2.815922	chr8	102275368	102275493	LINE|L1|L1ME3E	-	chr8	102271193	102276820	UBR5|ENST00000521566.1	-	102271193,102272528,102275520,102275707,102276773	102271245,102272772,102275619,102275828,102276820	0.933333
OCI_LY7	chr3	195247855	195247856	195247855	-	High_confidence	10	11	12	0.788068	2.913977	chr3	195247689	195248043	LTR|ERVL-MaLR|THE1C	-	chr3	195069969	195247856	XXYLT1|ENST00000418940.5	-	195069969,195156448,195207424,195226708,195247771	195070111,195156581,195207498,195226856,195247856	0.583333
OCI_LY7	chr14	91425815	91425821	91425815	+	High_confidence	98	103	151	9.916524	6.309445	chr14	91425625	91425984	LTR|ERVL-MaLR|THE1B	+	chr14	91425633	91430209	MSTRG.21152.1	+	91425633	91430209	0.529801
OCI_LY7	chr6	2886167	2886248	2886247	-	High_confidence	43	45	110	7.223958	5.618575	chr6	2886023	2886446	LTR|ERVL-MaLR|MSTB1	-	chr6	2853652	2887038	MSTRG.57179.1	-	2853652,2886112	2855690,2887038	0.900000
OCI_LY7	chr2	224742514	224742527	224742514	-	High_confidence	9	9	24	1.576136	3.855389	chr2	224742244	224742555	SINE|Alu|AluY	+	chr2	224738626	224742504	MSTRG.41173.1	-	224738626,224741294,224742214	224739043,224741407,224742504	0.708333
OCI_LY7	chr22	50756881	50756950	50756949	+	High_confidence	8	8	33	2.167187	4.510769	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.545455
OCI_LY7	chr7	1509420	1509436	1509435	-	High_confidence	14	20	64	4.203030	4.385933	chr7	1509415	1509588	LINE|L2|L2a	+	chr7	1506719	1509648	MSTRG.61247.1	-	1506719,1508656	1507700,1509648	0.953125
OCI_LY7	chrX	96836828	96836842	96836828	+	RAMPAGE_only	7	7	14	0.919413	3.378783	chrX	96836718	96837025	SINE|Alu|AluY	-	chrX	96685016	97469765	DIAPH2|ENST00000373054.5	+	96685016,96735757,96738585,96758153,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348117,97383908,97429649,97469693	96685190,96735790,96738762,96758258,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247841,97348280,97384044,97429745,97469765	0.928571
OCI_LY7	chr6	158810390	158810411	158810410	-	RAMPAGE_only	23	23	43	2.823911	4.320251	chr6	158810364	158810539	LINE|L2|L2c	+	chr6	158765740	158818227	EZR|ENST00000337147.11	-	158765740,158767260,158769325,158769783,158770763,158771243,158776407,158783519,158784643,158785308,158787107,158789287,158818081	158767078,158767512,158769418,158769944,158770894,158771407,158776504,158783666,158784727,158785583,158787203,158789371,158818227	0.604651
OCI_LY7	chr11	2386129	2386130	2386129	+	High_confidence	11	11	11	0.722396	2.845351	chr11	2385703	2386303	LINE|L1|L1ME2z	-	chr11	2386085	2396714	CD81|ENST00000492252.5	+	2386085,2390411,2394094,2394971,2395415,2395868,2396627	2386639,2390526,2394192,2395046,2395520,2395970,2396714	1.000000
OCI_LY7	chr16	30343468	30343469	30343468	-	High_confidence	232	247	302	19.833048	6.424251	chr16	30343427	30343531	SINE|Alu|AluYh7	+	chr16	30270064	30343492	MSTRG.25787.4	-	30270064,30273028,30273378,30276012,30277263,30277596,30278180,30278932,30279692,30279883,30280442,30281266,30281574,30285185,30286166,30288560,30291202,30293098,30294114,30294565,30298376,30299868,30300799,30301221,30305054,30305789,30334974,30343042	30270165,30273230,30273521,30276167,30277428,30277793,30278380,30279073,30279794,30279971,30280561,30281425,30281705,30285457,30286268,30288785,30291375,30293196,30294187,30294691,30298590,30299927,30301067,30301358,30305210,30305953,30339453,30343492	0.831126
OCI_LY7	chr20	47439257	47439294	47439261	-	High_confidence	34	42	183	12.018039	5.949197	chr20	47439110	47439491	LTR|ERVL-MaLR|MLT1K	+	chr20	47438732	47439303	MSTRG.42775.1	-	47438732	47439303	0.950820
OCI_LY7	chr3	170037624	170037646	170037635	+	High_confidence	8	8	28	1.838826	3.093992	chr3	170037624	170037724	DNA|hAT-Tip100|MamRep4096	+	chr3	170037928	170085403	GPR160|ENST00000355897.9	+	170037928,170038914,170079773,170083904	170038215,170039043,170079897,170085403	1.000000
OCI_LY7	chr17	3003636	3003669	3003656	-	High_confidence	13	24	76	4.991098	5.045505	chr17	3003638	3003842	LTR|Gypsy|MamGypLTR1b	-	chr17	3001913	3003641	MSTRG.27642.1	-	3001913	3003641	1.000000
OCI_LY7	chr12	9648855	9648893	9648855	+	High_confidence	6	6	25	1.641809	4.483856	chr12	9648830	9648973	LTR|ERV1|LTR8	-	chr12	9648046	9658415	LOC374443|NR_046445.1	+	9648046,9653682,9655872,9656567,9656920	9648328,9653808,9655979,9656697,9658415	0.600000
OCI_LY7	chr2	207662375	207662378	207662375	+	High_confidence	21	21	32	2.101515	4.042433	chr2	207662277	207662604	LTR|ERVL-MaLR|MLT1A1	+	chr2	207662374	207667024	LINC01857|ENST00000429730.1	+	207662374,207666680	207662522,207667024	0.843750
OCI_LY7	chr1	23838619	23838644	23838643	-	High_confidence	4	4	12	0.788068	2.550341	chr1	23837780	23838651	LTR|ERV1|LTR1A2	+	chr1	23801886	23838620	HMGCL|ENST00000374487.6	-	23801886,23804399,23808134,23810735,23814189,23816674,23817475,23820509,23826083,23838063	23802564,23804525,23808323,23810799,23814338,23816770,23817583,23820593,23826183,23838620	0.916667
OCI_LY7	chr22	42519180	42519185	42519180	+	RAMPAGE_only	31	33	48	3.152272	4.346922	chr22	42519127	42519409	LINE|L2|L2c	-	chr22	42553616	42558412	SERHL2|ENST00000447870.6	+	42553616,42554937,42555231,42555663,42556063,42556513,42558347	42553713,42555087,42555345,42555705,42556083,42556588,42558412	0.541667
OCI_LY7	chr14	101823636	101823663	101823652	+	High_confidence	44	44	94	6.173200	4.692630	chr14	101823598	101823757	SINE|MIR|MIRc	-	chr14	101824161	101824478	PPP2R5C|ENST00000607042.1	+	101824161	101824478	0.638298
OCI_LY7	chr5	31995279	31995300	31995279	+	High_confidence	20	31	84	5.516477	5.514050	chr5	31995203	31995407	DNA|hAT-Charlie|MER3	-	chr5	31995288	32069654	MSTRG.53693.6	+	31995288,32000138,32010329,32037230,32048538,32052610,32053768,32057654,32057877,32059238,32061001,32069568	31995638,32000271,32010482,32037342,32048684,32052730,32053883,32057728,32058103,32059356,32061134,32069654	0.547619
OCI_LY7	chr19	11849438	11849441	11849438	+	High_confidence	5	5	10	0.656723	2.725481	chr19	11849386	11849719	LTR|ERV1|MER49	-	chr19	11848725	11851110	ZNF439|ENST00000592495.1	+	11848725	11851110	0.600000
OCI_LY7	chr2	64090396	64090397	64090396	-	High_confidence	8	9	9	0.591051	2.750000	chr2	64089803	64090773	LINE|L2|L2a	+	chr2	64078358	64091396	MSTRG.37719.1	-	64078358,64080588,64087856	64078546,64080711,64091396	0.555556
OCI_LY7	chr10	46269580	46269624	46269609	-	High_confidence	98	107	305	20.030065	6.557252	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.875410
OCI_LY7	chr12	113058766	113058783	113058782	-	High_confidence	5	5	13	0.853740	3.180833	chr12	113058611	113058784	SINE|MIR|MIRb	+	chr12	113048819	113058883	MSTRG.16863.1	-	113048819	113058883	0.769231
OCI_LY7	chr4	143404606	143404658	143404643	-	High_confidence	7	8	44	2.889583	4.561482	chr4	143404551	143404753	SINE|Alu|AluJr	+	chr4	143404259	143404749	MSTRG.52761.1	-	143404259	143404749	0.727273
OCI_LY7	chr17	58565900	58565907	58565906	-	RAMPAGE_only	3	3	7	0.459706	2.584963	chr17	58565889	58566073	DNA|hAT-Charlie|MER5A	+	chr17	58556679	58564258	TEX14|ENST00000584699.5	-	58556679,58559452,58561519,58564156	58557047,58559562,58561612,58564258	0.857143
OCI_LY7	chr8	119932680	119932703	119932680	+	RAMPAGE_only	3	3	13	0.853740	2.507380	chr8	119932564	119933098	LINE|L2|L2a	-	chr8	119941567	120056226	MSTRG.66624.4	+	119941567,119965231,120001524,120002976,120006804,120009028,120049575	119942521,119965410,120001710,120003111,120006875,120009133,120056226	0.615385
OCI_LY7	chr12	31025135	31025145	31025144	-	RAMPAGE_only	8	12	21	1.379119	3.916127	chr12	31023462	31026085	LINE|L1|L1PBa	+	chr12	31020762	31073847	DDX11-AS1|ENST00000500527.1	-	31020762,31060659,31073194	31022029,31060770,31073847	0.714286
OCI_LY7	chr20	45419957	45419978	45419957	+	High_confidence	3	3	9	0.591051	2.947703	chr20	45419784	45420019	SINE|MIR|MIRb	+	chr20	45419941	45420683	PIGT|ENST00000640649.1	+	45419941,45420331,45420527	45420223,45420429,45420683	0.555556
OCI_LY7	chr12	113208492	113208548	113208547	+	High_confidence	3	3	10	0.656723	2.921928	chr12	113208513	113208903	LTR|ERVL|LTR33A_	-	chr12	113207674	113212023	MSTRG.16886.1	+	113207674,113207845	113207739,113212023	1.000000
OCI_LY7	chr8	66926449	66926523	66926450	-	High_confidence	35	43	73	4.794081	4.162573	chr8	66926412	66926708	SINE|Alu|AluY	-	chr8	66922017	66926398	SNHG6|ENST00000520619.1	-	66922017,66922323,66922613,66926197	66922114,66922392,66922725,66926398	0.863014
OCI_LY7	chr14	106355516	106355552	106355551	-	High_confidence	18	19	50	3.283617	3.062907	chr14	106355468	106355712	LTR|ERVL|LTR16B2	+	chr14	106329902	106356125	MSTRG.21701.1	-	106329902,106355004	106329969,106356125	0.900000
OCI_LY7	chr14	30690430	30690453	30690452	+	RAMPAGE_only	2	2	6	0.394034	2.584963	chr14	30684809	30690837	LINE|L1|L1HS	-	chr14	30676125	30705885	SCFD1|ENST00000554486.1	+	30676125,30694772,30700187,30702295,30705822	30676633,30694869,30700258,30702375,30705885	0.666667
OCI_LY7	chr15	80059918	80059933	80059918	+	High_confidence	39	39	81	5.319460	4.466627	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.962963
OCI_LY7	chr15	88635631	88635661	88635660	+	High_confidence	103	104	240	15.761362	6.106842	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.945833
OCI_LY7	chr5	177311066	177311103	177311066	+	High_confidence	11	11	22	1.444792	3.970573	chr5	177310885	177311074	LINE|L2|L2c	-	chr5	177311085	177312213	MSTRG.56915.1	+	177311085	177312213	0.863636
OCI_LY7	chr3	9987395	9987396	9987395	-	High_confidence	11	15	16	1.050757	2.973557	chr3	9987368	9987453	SINE|MIR|MIRb	+	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.937500
OCI_LY7	chr4	37851062	37851086	37851085	+	High_confidence	6	6	15	0.985085	3.106891	chr4	37851009	37851162	SINE|MIR|MIR3	-	chr4	37850798	37862013	MSTRG.51083.8	+	37850798,37855607,37861509	37851460,37855741,37862013	0.866667
OCI_LY7	chr1	6208681	6208682	6208681	-	High_confidence	45	46	46	3.020928	3.095794	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186614	6208682	MSTRG.318.10	-	6186614,6192929,6197651,6208680	6186710,6193054,6197756,6208682	0.847826
OCI_LY7	chr9	128921399	128921413	128921399	+	High_confidence	25	26	44	2.889583	4.720113	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.840909
OCI_LY7	chr3	9391827	9391828	9391827	-	High_confidence	10	11	12	0.788068	3.459432	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9389914	9391822	THUMPD3-AS1|ENST00000522221.1	-	9389914,9391426	9390497,9391822	0.666667
OCI_LY7	chr11	87359646	87359647	87359646	+	High_confidence	5	6	8	0.525379	3.000000	chr11	87359683	87359924	LTR|ERVL|LTR18A	+	chr11	87359613	87793901	MSTRG.12606.1	+	87359613,87362356,87553298,87793871	87359950,87362476,87553369,87793901	0.500000
OCI_LY7	chr16	2757778	2757811	2757778	+	High_confidence	3	6	18	1.182102	2.524945	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
OCI_LY7	chr6	139286743	139286763	139286762	+	RAMPAGE_only	4	4	9	0.591051	2.725481	chr6	139286577	139287057	DNA|hAT-Charlie|MER1A	+	chr6	139271361	139507598	AL592429.2|ENST00000650173.1	+	139271361,139271658,139283103,139286844,139429080,139436336,139451557,139506463	139271549,139271858,139283166,139286902,139429613,139436460,139451669,139507598	0.777778
OCI_LY7	chr1	212794723	212794807	212794761	+	High_confidence	11	11	77	5.056770	5.028368	chr1	212794607	212794885	LINE|L2|L2c	-	chr1	212794682	212804651	TATDN3|ENST00000530399.2	+	212794682,212795094,212796516,212797111,212802700,212804319,212804595	212794808,212795127,212796590,212797196,212802763,212804429,212804651	0.571429
OCI_LY7	chr11	65382641	65382673	65382645	-	High_confidence	6	6	17	1.116430	3.077820	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.941176
OCI_LY7	chr2	47695290	47695292	47695290	-	High_confidence	90	180	209	13.725520	6.067858	chr2	47694856	47695264	LTR|ERV1|LTR49-int	-	chr2	47692252	47695304	MSTRG.37443.1	-	47692252	47695304	0.995215
OCI_LY7	chr8	55843611	55843655	55843648	+	High_confidence	15	21	52	3.414962	4.938803	chr8	55843428	55843826	LTR|ERVL-MaLR|MLT1B	+	chr8	55843466	55846108	MSTRG.65593.1	+	55843466	55846108	0.615385
OCI_LY7	chr6	88179752	88179784	88179764	-	High_confidence	26	27	148	9.719507	5.915700	chr6	88179609	88179800	LTR|ERVL|LTR33A_	-	chr6	88176905	88179830	MSTRG.59490.1	-	88176905,88179690	88178434,88179830	0.716216
OCI_LY7	chr19	45450744	45450769	45450744	-	High_confidence	7	7	30	1.970170	3.883337	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.766667
OCI_LY7	chr4	152666277	152666346	152666345	+	High_confidence	32	35	60	3.940341	4.708334	chr4	152666206	152666370	DNA|hAT-Charlie|MER5B	+	chr4	152666367	152673403	MSTRG.52982.1	+	152666367,152673325	152668645,152673403	0.983333
OCI_LY7	chr20	33441487	33441506	33441505	-	RAMPAGE_only	4	5	12	0.788068	3.084963	chr20	33441339	33441479	SINE|MIR|MIR3	-	chr20	33407954	33443873	MSTRG.42296.1	-	33407954,33408700,33412295,33412574,33417718,33438840,33443310	33408596,33408888,33412426,33412782,33417923,33439026,33443873	0.500000
OCI_LY7	chr16	75433811	75433852	75433817	+	High_confidence	7	7	24	1.576136	4.053509	chr16	75433678	75434907	DNA|TcMar-Tigger|Tigger17	+	chr16	75433835	75436392	AC009163.6|ENST00000621929.1	+	75433835	75436392	1.000000
OCI_LY7	chr10	28335268	28335296	28335269	-	High_confidence	58	75	158	10.376230	4.963733	chr10	28334857	28335233	LTR|ERVL-MaLR|MLT1F	-	chr10	28124071	28335294	MSTRG.7631.8	-	28124071,28125009,28131559,28147482,28149981,28202152,28238567,28334869	28124116,28125091,28131691,28147563,28150059,28202271,28238735,28335294	0.892405
OCI_LY7	chr6	155183066	155183099	155183066	+	RAMPAGE_only	16	17	35	2.298532	4.395999	chr6	155182964	155183097	SINE|Alu|FLAM_A	-	chr6	155149120	155257190	TIAM2|ENST00000528391.6	+	155149120,155164414,155165262,155168844,155176815,155179038,155179377,155182225,155183236,155211203,155240529,155244010,155244657,155245622,155247999,155249850,155250912,155251944,155252947,155253972,155254418,155256459	155149226,155164600,155165409,155168916,155176977,155179143,155179456,155182318,155183500,155211307,155240709,155244079,155244783,155245731,155248179,155249969,155251021,155252003,155253053,155254060,155254573,155257190	0.628571
OCI_LY7	chr13	46156444	46156520	46156444	-	RAMPAGE_only	8	11	84	5.516477	4.494100	chr13	46156240	46156407	DNA|TcMar-Tigger|Tigger19a	-	chr13	46146905	46153265	LCP1|ENST00000469227.5	-	46146905,46148351,46150935,46152779,46153138	46147103,46148447,46151078,46152945,46153265	0.928571
OCI_LY7	chr12	6626828	6626851	6626848	-	High_confidence	4	5	20	1.313447	3.721612	chr12	6626594	6626983	LINE|L2|L2c	+	chr12	6618834	6627568	MSTRG.13782.1	-	6618834,6626675	6621464,6627568	0.600000
OCI_LY7	chr15	22250764	22250802	22250801	+	RAMPAGE_only	8	8	22	1.444792	3.477175	chr15	22250850	22251025	SINE|MIR|MIRc	+	chr15	22258613	22282880	REREP3|NR_033735.1	+	22258613,22278817,22282798	22258878,22279274,22282880	1.000000
OCI_LY7	chr11	123060168	123060253	123060174	-	High_confidence	32	38	260	17.074809	5.065726	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.661538
OCI_LY7	chr7	47186343	47186503	47186360	-	High_confidence	40	42	205	13.462830	6.569908	chr7	47186268	47186634	LTR|ERVL|ERV3-16A3_LTR	+	chr7	47166729	47186432	MSTRG.62267.10	-	47166729,47185729	47173797,47186432	0.800000
OCI_LY7	chr2	3536827	3536873	3536862	-	High_confidence	16	16	107	7.026941	5.836134	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.813084
OCI_LY7	chr12	55930641	55930642	55930641	+	High_confidence	10	12	12	0.788068	3.022055	chr12	55930357	55930665	SINE|Alu|AluSc8	-	chr12	55930427	55936567	DGKA|ENST00000547015.5	+	55930427,55931163,55936422	55930643,55931344,55936567	0.500000
OCI_LY7	chr9	133703532	133703597	133703596	-	High_confidence	103	119	427	28.042091	5.110958	chr9	133703436	133703570	SINE|MIR|MIR	-	chr9	133663563	133703701	SARDH|ENST00000371868.5	-	133663563,133666734,133670583,133671534,133685192,133690379,133694257,133696222,133702915	133664014,133666936,133670752,133671697,133685286,133690527,133694371,133696361,133703701	0.985948
OCI_LY7	chr1	182634065	182634067	182634065	+	High_confidence	43	59	72	4.728409	4.917579	chr1	182634066	182634251	SINE|tRNA-RTE|MamSINE1	+	chr1	182634050	182635420	MSTRG.5322.1	+	182634050	182635420	0.986111
OCI_LY7	chr8	32927967	32927977	32927976	+	RAMPAGE_only	76	86	163	10.704592	6.070849	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.705521
OCI_LY7	chrX	7147267	7147288	7147267	+	High_confidence	18	18	46	3.020928	4.155248	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.717391
OCI_LY7	chr2	33061776	33061777	33061776	+	RAMPAGE_only	19	19	21	1.379119	3.176110	chr2	33061199	33062676	LINE|L1|L1ME2z	-	chr2	33134596	33399509	LTBP1|NM_000627.3	+	33134596,33186855,33188576,33217551,33222079,33243661,33252676,33257283,33259587,33262721,33263293,33273655,33274964,33275800,33280038,33293159,33300450,33301521,33309433,33315143,33342837,33347366,33360596,33361428,33363389,33364215,33365332,33389183,33397132,33398363	33134960,33187080,33188851,33217654,33222151,33243784,33252844,33257511,33259610,33262821,33263392,33273781,33275090,33275923,33280158,33293282,33300573,33301644,33309556,33315269,33342963,33347510,33360779,33361515,33363518,33364356,33365503,33389306,33397282,33399509	0.571429
OCI_LY7	chr9	39809803	39809853	39809852	-	High_confidence	24	24	88	5.779166	3.270442	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803627	39810013	MSTRG.68062.4	-	39803627,39809730	39803859,39810013	0.840909
OCI_LY7	chr1	6200859	6200879	6200859	-	High_confidence	88	89	348	22.853976	4.509555	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.968391
OCI_LY7	chr5	112521510	112521521	112521510	+	High_confidence	13	13	48	3.152272	4.306732	chr5	112518481	112523901	LINE|L1|L1PBa1	-	chr5	112521507	112532936	MSTRG.55439.1	+	112521507,112529836	112521548,112532936	0.958333
OCI_LY7	chr9	37375178	37375194	37375178	+	RAMPAGE_only	9	10	21	1.379119	2.843302	chr9	37375186	37375407	LINE|L1|L1ME3G	+	chr9	37319963	37375729	MSTRG.68035.1	+	37319963,37374433	37321625,37375729	0.857143
OCI_LY7	chr4	184353936	184353960	184353936	-	High_confidence	5	5	17	1.116430	3.702820	chr4	184353593	184354081	LTR|ERVL-MaLR|MLT1G	+	chr4	184340755	184353977	LINC02363|ENST00000317596.3	-	184340755,184350088,184353312	184342053,184350278,184353977	0.823529
OCI_LY7	chr3	36925035	36925068	36925056	-	High_confidence	34	37	138	9.062783	5.886719	chr3	36923610	36925588	LTR|ERV1|MER83A-int	+	chr3	36826831	36925054	MSTRG.46668.4	-	36826831,36829563,36830872,36834761,36838371,36838612,36842621,36846247,36847199,36851718,36852145,36855172,36858717,36860905,36864318,36874125,36889828,36892201,36892900,36895639,36899108,36903148,36908322,36924932	36828375,36829662,36833919,36834907,36838504,36838716,36842710,36846404,36847346,36851856,36852345,36858049,36858894,36861160,36864480,36874296,36889960,36892340,36892984,36895758,36899259,36903275,36908454,36925054	0.840580
OCI_LY7	chr21	33945809	33945810	33945809	-	RAMPAGE_only	58	59	59	3.874668	4.391453	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	0.983051
OCI_LY7	chr11	108224043	108224075	108224074	+	High_confidence	5	5	13	0.853740	2.777363	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.615385
OCI_LY7	chr22	49925145	49925197	49925145	+	RAMPAGE_only	10	13	46	3.020928	4.180689	chr22	49924850	49925156	SINE|Alu|AluY	+	chr22	49923209	49927528	CRELD2|ENST00000487969.1	+	49923209,49927254	49925557,49927528	0.913043
OCI_LY7	chr16	87809603	87809606	87809605	-	RAMPAGE_only	107	147	187	12.280728	5.705758	chr16	87809356	87809767	LTR|ERVL-MaLR|MLT1C	-	chr16	87808074	87810741	MSTRG.27275.1	-	87808074	87810741	0.973262
OCI_LY7	chr5	72298246	72298259	72298258	-	High_confidence	24	24	59	3.874668	4.903083	chr5	72297952	72298501	LINE|L1|L1PA16	+	chr5	72220836	72298263	MSTRG.54483.5	-	72220836,72223682,72226056,72228265,72232442,72234118,72238013,72295530,72297631,72297918	72221148,72223850,72226199,72228368,72232558,72234197,72238128,72295589,72297702,72298263	0.711864
OCI_LY7	chr12	53673698	53673699	53673698	-	High_confidence	12	12	12	0.788068	3.584963	chr12	53673541	53673835	SINE|Alu|AluSp	+	chr12	53665170	53674021	ATP5MC2|ENST00000495596.5	-	53665170,53669147,53669870,53672575	53665428,53669341,53669948,53674021	1.000000
OCI_LY7	chr22	49657461	49657516	49657461	-	High_confidence	9	11	51	3.349290	5.024983	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.764706
OCI_LY7	chr3	6717550	6717551	6717550	+	RAMPAGE_only	31	33	44	2.889583	4.261747	chr3	6717382	6717733	LTR|ERVL-MaLR|MLT1A0	+	chr3	6490478	6736129	AC069277.1|ENST00000433639.1	+	6490478,6717568,6724449,6732270,6735661	6490672,6717667,6724546,6732495,6736129	0.681818
OCI_LY7	chr16	87724930	87724942	87724941	-	RAMPAGE_only	3	4	7	0.459706	2.521641	chr16	87724137	87725207	LINE|L1|L1ME2z	+	chr16	87707815	87710877	KLHDC4|ENST00000569487.1	-	87707815,87708349,87709264	87708075,87708548,87710877	0.857143
OCI_LY7	chr12	56157332	56157362	56157332	+	High_confidence	15	15	62	4.071685	4.288064	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.870968
OCI_LY7	chr18	10951029	10951030	10951029	-	High_confidence	10	14	15	0.985085	3.521641	chr18	10950949	10951405	LTR|ERV1|MER65C	+	chr18	10948565	10951097	MSTRG.31540.1	-	10948565	10951097	0.866667
OCI_LY7	chr3	158351192	158351203	158351202	+	RAMPAGE_only	5	6	11	0.722396	2.550341	chr3	158351047	158351263	LINE|L1|L1MEj	+	chr3	158203071	158543687	RSRC1|ENST00000482822.2	+	158203071,158298038,158354856,158460934,158537091,158543334	158203245,158298075,158354908,158461003,158537198,158543687	1.000000
OCI_LY7	chr12	52118263	52118286	52118267	-	High_confidence	15	17	49	3.217945	4.673140	chr12	52116006	52118404	LTR|ERV1|HERVE-int	-	chr12	52092567	52118517	MSTRG.15145.3	-	52092567,52094678,52104158,52108068,52115868	52093498,52094849,52106001,52108209,52118517	0.938776
OCI_LY7	chr19	18227905	18227906	18227905	-	RAMPAGE_only	9	9	9	0.591051	2.947703	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
OCI_LY7	chr20	18794065	18794086	18794085	+	High_confidence	65	66	154	10.113541	4.795184	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.993506
OCI_LY7	chrX	140821356	140821357	140821356	-	High_confidence	44	44	44	2.889583	4.661263	chrX	140821172	140821786	LTR|ERV1|LTR9B	-	chrX	140820215	140821307	MSTRG.72654.1	-	140820215	140821307	0.818182
OCI_LY7	chr10	100014347	100014386	100014347	-	High_confidence	60	61	108	7.092613	5.644054	chr10	100014244	100014313	LINE|L2|L2a	-	chr10	100012567	100014448	MSTRG.9300.1	-	100012567	100014448	0.888889
OCI_LY7	chr1	6200699	6200753	6200752	-	High_confidence	3	3	10	0.656723	2.646439	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	1.000000
OCI_LY7	chr16	11308813	11308856	11308832	-	RAMPAGE_only	3	4	17	1.116430	3.125000	chr16	11307650	11309248	LTR|ERV1|MER52A	-	chr16	11307578	11309942	MSTRG.25099.1	-	11307578	11309942	0.941176
OCI_LY7	chr6	27890989	27890999	27890993	+	High_confidence	65	83	143	9.391145	4.696076	chr6	27890942	27891243	SINE|Alu|AluSz	-	chr6	27890994	27892426	MSTRG.57977.1	+	27890994	27892426	0.979021
OCI_LY7	chr12	31959160	31959179	31959178	+	High_confidence	12	13	25	1.641809	3.733661	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31993103	MSTRG.14576.2	+	31959407,31960776,31980877,31987238,31992377	31959491,31960871,31985957,31987322,31993103	0.880000
OCI_LY7	chrX	48683362	48683363	48683362	+	High_confidence	141	166	169	11.098626	4.409441	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.958580
OCI_LY7	chr17	46143719	46143720	46143719	-	RAMPAGE_only	8	8	10	0.656723	2.947703	chr17	46143522	46143831	SINE|Alu|AluY	+	chr17	46138579	46225371	MSTRG.29625.31	-	46138579,46146855,46169530,46170854,46223670,46225340	46146541,46152966,46169605,46172232,46223804,46225371	0.500000
OCI_LY7	chr7	74650219	74650258	74650238	+	High_confidence	12	12	40	2.626894	4.634184	chr7	74650210	74650770	DNA|TcMar-Tigger|Tigger7	+	chr7	74650242	74701849	MSTRG.62754.1	+	74650242,74689123,74690972,74698960,74700246,74700605	74650796,74689227,74691111,74699095,74700430,74701849	0.600000
OCI_LY7	chr5	151212106	151212150	151212133	+	RAMPAGE_only	14	14	59	3.874668	5.208500	chr5	151212179	151212340	SINE|MIR|MIR3	+	chr5	151252891	151270440	GM2A|ENST00000357164.3	+	151252891,151259754,151266730,151267295	151253297,151259916,151266913,151270440	0.525424
OCI_LY7	chr2	218287279	218287280	218287279	-	High_confidence	6	6	9	0.591051	2.725481	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218274191	218286849	TMBIM1|NM_001321427.1	-	218274191,218276025,218277003,218277365,218277632,218277934,218278514,218279037,218279288,218280025,218281939,218285762,218286339	218275621,218276079,218277099,218277453,218277670,218277974,218278565,218279091,218279353,218280126,218282181,218285938,218286849	0.777778
OCI_LY7	chr15	33194708	33194749	33194708	-	High_confidence	20	21	95	6.238873	4.928816	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.884211
OCI_LY7	chrX	19801062	19801073	19801062	-	RAMPAGE_only	14	16	32	2.101515	4.429229	chrX	19800954	19801099	LTR|ERVL-MaLR|MLT1L	+	chrX	19533964	19799799	SH3KBP1|NM_001024666.2	-	19533964,19537716,19541924,19545921,19549973,19569102,19588642,19592066,19594948,19607937,19631863,19645399,19683822,19695611,19706880,19746317,19799633	19536458,19537780,19542193,19546050,19550083,19569188,19588802,19592147,19595000,19608045,19631958,19645475,19684028,19695741,19706984,19746441,19799799	0.906250
OCI_LY7	chr6	17472051	17472052	17472051	+	RAMPAGE_only	16	17	17	1.116430	3.454822	chr6	17472052	17472353	SINE|Alu|AluYa5	+	chr6	18469613	18478371	MSTRG.57633.1	+	18469613	18478371	1.000000
OCI_LY7	chr2	224742441	224742442	224742441	-	High_confidence	59	59	84	5.516477	5.352630	chr2	224742244	224742555	SINE|Alu|AluY	+	chr2	224738626	224742504	MSTRG.41173.1	-	224738626,224741294,224742214	224739043,224741407,224742504	0.702381
OCI_LY7	chr8	119943420	119943423	119943422	-	High_confidence	137	221	229	15.038967	6.509809	chr8	119943246	119943619	LTR|ERVL-MaLR|THE1D	-	chr8	119938886	119943412	MSTRG.66634.1	-	119938886	119943412	0.681223
OCI_LY7	chr12	53034002	53034028	53034021	+	RAMPAGE_only	2	2	8	0.525379	2.500000	chr12	53034069	53034237	DNA|hAT-Charlie|MER20B	+	chr12	53037725	53040352	EIF4B|ENST00000549592.1	+	53037725,53039629,53040142	53039343,53039702,53040352	1.000000
OCI_LY7	chr15	57300308	57300339	57300338	+	High_confidence	4	4	15	0.985085	3.506891	chr15	57300291	57300572	SINE|Alu|AluSg	-	chr15	57300364	57307761	LINC00926|ENST00000501726.1	+	57300364,57305318,57307541	57300924,57307068,57307761	0.866667
OCI_LY7	chr15	82546441	82546442	82546441	-	RAMPAGE_only	15	15	15	0.985085	3.456565	chr15	82546117	82546394	SINE|Alu|AluSx1	-	chr15	82536749	82540564	RPS17|ENST00000330244.11	-	82536749,82538305,82538879,82539980,82540425	82536881,82538371,82538985,82540132,82540564	1.000000
OCI_LY7	chr1	206052882	206052907	206052890	+	High_confidence	112	112	332	21.803218	6.162456	chr1	206052518	206053000	LTR|ERV1|LTR2B	+	chr1	206052844	206061913	MSTRG.5924.7	+	206052844,206061344,206061661	206060833,206061397,206061913	0.981928
OCI_LY7	chr2	64100780	64100837	64100780	-	RAMPAGE_only	7	10	46	3.020928	4.409190	chr2	64100726	64101029	SINE|Alu|AluSx	-	chr2	64100397	64144362	PELI1|ENST00000466177.6	-	64100397,64104553,64104700,64108239,64144080	64100499,64104597,64104830,64108379,64144362	0.695652
OCI_LY7	chr19	41545191	41545192	41545191	+	RAMPAGE_only	3021	3061	3076	202.008129	7.101895	chr19	41544577	41545607	LTR|ERVK|LTR5A	+	chr19	41549525	41557217	MSTRG.34879.9	+	41549525,41553705,41554950	41551302,41553746,41557217	0.842978
OCI_LY7	chr9	125410429	125410471	125410429	+	High_confidence	8	8	40	2.626894	4.325071	chr9	125410341	125410430	LTR|ERVL-MaLR|MLT1K	+	chr9	125410474	125413085	MSTRG.69823.1	+	125410474,125410960,125412065	125410583,125411046,125413085	0.650000
OCI_LY7	chr6	88617208	88617240	88617208	+	High_confidence	18	19	71	4.662736	4.309142	chr6	88616990	88617278	SINE|Alu|AluY	+	chr6	88616809	88617747	MSTRG.59503.1	+	88616809	88617747	0.774648
OCI_LY7	chr19	6604090	6604094	6604090	-	High_confidence	54	72	136	8.931439	5.391733	chr19	6604064	6604275	LTR|ERVL-MaLR|MLT1J	-	chr19	6582529	6604145	MSTRG.33132.2	-	6582529,6590102,6590840,6603940	6586405,6590136,6594008,6604145	0.779412
OCI_LY7	chr2	70103214	70103234	70103233	-	High_confidence	4	4	12	0.788068	3.418296	chr2	70103170	70103438	LINE|L1|L1M5	-	chr2	70093938	70103220	PCBP1-AS1|ENST00000442326.1	-	70093938,70094385,70094958,70102790,70103189	70094247,70094478,70095059,70102924,70103220	0.666667
OCI_LY7	chr13	30377103	30377104	30377103	-	High_confidence	8	8	11	0.722396	2.521928	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30357741	30377145	LINC00426|ENST00000420219.5	-	30357741,30358253,30363160,30372284,30375466,30376826	30357889,30358376,30363226,30372374,30375776,30377145	0.727273
OCI_LY7	chr1	173414273	173414306	173414275	-	RAMPAGE_only	13	22	81	5.319460	4.877158	chr1	173414100	173414483	LTR|ERVL-MaLR|MLT1B	-	chr1	173412596	173415801	MSTRG.5081.1	-	173412596	173415801	0.962963
OCI_LY7	chr1	206053080	206053104	206053080	+	High_confidence	3	4	11	0.722396	2.521928	chr1	206053000	206053902	LTR|ERV1|Harlequin-int	+	chr1	206052844	206061913	MSTRG.5924.7	+	206052844,206061344,206061661	206060833,206061397,206061913	0.909091
OCI_LY7	chr9	137738690	137738736	137738712	+	RAMPAGE_only	6	6	20	1.313447	3.921928	chr9	137738221	137739080	LINE|L1|L1MB3	+	chr9	137743173	137776840	EHMT1|ENST00000640639.1	+	137743173,137743391,137743901,137752330,137754170,137757879,137762674,137775108,137776617	137743262,137743528,137744090,137752408,137754291,137758011,137762820,137775252,137776840	0.700000
OCI_LY7	chr8	56559496	56559497	56559496	-	High_confidence	16	16	20	1.313447	3.681881	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56559031	56559275	MSTRG.65606.1	-	56559031	56559275	0.850000
OCI_LY7	chr17	47067498	47067518	47067498	-	High_confidence	184	198	719	47.218415	6.023043	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.878999
OCI_LY7	chr12	121980459	121980466	121980462	+	High_confidence	11	14	36	2.364204	4.395999	chr12	121980406	121980643	SINE|Alu|AluYh3a3	-	chr12	121980077	121983274	MSTRG.17168.1	+	121980077	121983274	0.944444
OCI_LY7	chr1	161420232	161420260	161420232	-	High_confidence	9	10	31	2.035843	3.360012	chr1	161420232	161420439	DNA|hAT-Tip100|MER45B	-	chr1	161419383	161421202	MSTRG.4759.2	-	161419383	161421202	0.774194
OCI_LY7	chr10	50362049	50362058	50362050	-	RAMPAGE_only	26	34	67	4.400047	4.757899	chr10	50361944	50362105	LINE|L2|L2c	+	chr10	50310952	50363319	MSTRG.8122.3	-	50310952,50327204,50343491,50361971	50311415,50327322,50344345,50363319	0.731343
OCI_LY7	chr18	10950991	10950992	10950991	-	High_confidence	6	7	8	0.525379	2.521641	chr18	10950949	10951405	LTR|ERV1|MER65C	+	chr18	10948565	10951097	MSTRG.31540.1	-	10948565	10951097	0.625000
OCI_LY7	chr9	39810023	39810094	39810033	-	High_confidence	53	53	176	11.558332	5.417030	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.590909
OCI_LY7	chr14	65304667	65304673	65304672	+	High_confidence	5	5	11	0.722396	2.663533	chr14	65304618	65304917	SINE|Alu|AluSg	-	chr14	65303935	65307012	MSTRG.20354.1	+	65303935	65307012	1.000000
OCI_LY7	chrX	154327167	154327184	154327183	+	High_confidence	13	14	20	1.313447	3.003113	chrX	154327074	154327312	SINE|MIR|MIRb	+	chrX	154327183	154327899	TKTL1|ENST00000482044.1	+	154327183,154327838	154327687,154327899	0.550000
OCI_LY7	chr8	119942391	119942453	119942410	+	High_confidence	31	31	145	9.522490	5.424521	chr8	119942214	119942505	SINE|Alu|AluSx	-	chr8	119942068	120056184	MSTRG.66624.5	+	119942068,119965231,120001524,120002976,120006804,120009028,120049575	119942296,119965410,120001710,120003111,120006875,120009133,120056184	0.682759
OCI_LY7	chr4	70667382	70667403	70667402	-	High_confidence	6	6	16	1.050757	3.577820	chr4	70667350	70667655	SINE|Alu|AluSx1	+	chr4	70655543	70667617	MSTRG.51559.3	-	70655543,70657210,70662091,70666426,70666848,70667293	70656539,70657291,70662215,70666514,70666899,70667617	0.687500
OCI_LY7	chr18	12419867	12419911	12419903	+	High_confidence	12	13	42	2.758238	4.698539	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12419891	12427322	PRELID3A|ENST00000589952.5	+	12419891,12420324,12421539,12427040,12427220	12419947,12420493,12421629,12427111,12427322	0.690476
OCI_LY7	chr11	67650350	67650351	67650350	+	RAMPAGE_only	176	177	179	11.755350	6.112782	chr11	67650341	67650477	LTR|ERV1|LTR72B	+	chr11	67645273	67652713	MSTRG.11985.1	+	67645273	67652713	0.983240
OCI_LY7	chr11	13924827	13924853	13924827	-	High_confidence	19	23	55	3.611979	4.791890	chr11	13924594	13925000	LINE|L2|L2c	+	chr11	13921446	13924863	LOC101928132|NR_135052.1	-	13921446,13924691	13921961,13924863	0.800000
OCI_LY7	chr14	95533960	95533976	95533975	-	High_confidence	4	5	11	0.722396	3.121928	chr14	95533945	95534006	LINE|L2|L2b	+	chr14	95532911	95534872	SNHG10|NR_003138.3	-	95532911	95534872	0.909091
OCI_LY7	chr11	331234	331239	331234	+	High_confidence	58	58	103	6.764251	5.399970	chr11	331128	331255	LTR|ERVL-MaLR|MLT1I-int	+	chr11	330946	333688	MSTRG.10069.1	+	330946,332702	332029,333688	0.932039
OCI_LY7	chr1	53368122	53368172	53368171	-	High_confidence	4	4	27	1.773153	3.317406	chr1	53367866	53368194	LINE|L2|L2b	+	chr1	53366667	53368245	AC119428.2|ENST00000449958.1	-	53366667,53368005	53367277,53368245	0.777778
OCI_LY7	chr8	16186558	16186605	16186560	-	High_confidence	13	18	50	3.283617	5.011663	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.740000
OCI_LY7	chr17	68413639	68413649	68413648	+	High_confidence	4	4	11	0.722396	2.721928	chr17	68408123	68414142	LINE|L1|L1PA3	-	chr17	68413739	68428763	AC007780.1|ENST00000592030.1	+	68413739,68413910,68420188,68428636	68413795,68414182,68420506,68428763	0.545455
OCI_LY7	chr8	16186244	16186272	16186271	-	High_confidence	13	16	29	1.904498	4.035582	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.965517
OCI_LY7	chr17	76481914	76481948	76481930	-	High_confidence	25	26	130	8.537405	5.284418	chr17	76481672	76481952	SINE|Alu|AluSc8	+	chr17	76479785	76481894	RHBDF2|ENST00000591879.1	-	76479785,76481374	76479854,76481894	0.930769
OCI_LY7	chr5	181173496	181173519	181173496	-	High_confidence	6	6	24	1.576136	3.918296	chr5	181173369	181173517	SINE|Alu|AluJb	-	chr5	181170981	181173612	MSTRG.57109.1	-	181170981,181172953	181171324,181173612	0.541667
OCI_LY7	chr17	59619894	59619923	59619894	+	High_confidence	359	447	1170	76.836642	6.316090	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.934188
OCI_LY7	chr21	29121989	29121993	29121992	+	RAMPAGE_only	13	15	31	2.035843	4.281728	chr21	29121887	29122110	DNA|hAT-Charlie|Charlie29a	+	chr21	29130484	29175889	MAP3K7CL|NM_001286620.1	+	29130484,29133305,29149188,29159940,29174711	29130923,29133414,29149250,29160056,29175889	0.516129
OCI_LY7	chr15	41365743	41365809	41365743	+	High_confidence	10	10	59	3.874668	3.082637	chr15	41365708	41366019	SINE|Alu|AluSc8	-	chr15	41365746	41377288	NUSAP1|ENST00000560318.1	+	41365746,41371526,41375711,41377195	41365863,41371684,41375828,41377288	0.966102
OCI_LY7	chr12	10396431	10396451	10396450	+	RAMPAGE_only	7	11	28	1.838826	3.869300	chr12	10396247	10396507	SINE|Alu|AluSz	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.928571
OCI_LY7	chr11	121590824	121590873	121590824	+	High_confidence	19	19	89	5.844839	4.889876	chr11	121590682	121590892	DNA|TcMar-Tigger|Tigger19a	+	chr11	121590418	121629684	SORL1|ENST00000527934.1	+	121590418,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121590897,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121629684	0.966292
OCI_LY7	chr14	106193283	106193285	106193284	+	High_confidence	4	6	9	0.591051	2.750000	chr14	106192967	106193706	LTR|ERVL-MaLR|MSTB-int	-	chr14	106193356	106210856	MSTRG.21687.2	+	106193356,106205075,106206077	106202463,106205151,106210856	0.888889
OCI_LY7	chr4	81154211	81154257	81154221	-	High_confidence	11	11	55	3.611979	4.379658	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.927273
OCI_LY7	chr18	8707844	8707861	8707860	+	High_confidence	17	25	42	2.758238	4.019728	chr18	8707719	8707922	SINE|tRNA-RTE|MamSINE1	-	chr18	8707410	8832777	MTCL1|ENST00000517570.5	+	8707410,8718423,8720337,8777832,8783529,8785935,8796231,8798096,8806892,8812978,8818962,8821466,8824698,8828907,8831606	8707565,8718648,8720496,8777892,8784843,8786091,8796462,8798291,8807060,8813233,8819259,8821498,8826232,8828964,8832777	0.500000
OCI_LY7	chr17	68413718	68413750	68413749	+	High_confidence	11	15	38	2.495549	4.385957	chr17	68408123	68414142	LINE|L1|L1PA3	-	chr17	68413739	68428763	AC007780.1|ENST00000592030.1	+	68413739,68413910,68420188,68428636	68413795,68414182,68420506,68428763	0.552632
OCI_LY7	chr5	96958196	96958276	96958267	+	High_confidence	36	42	138	9.062783	5.425150	chr5	96958190	96958348	DNA|TcMar-Tigger|Tigger13a	-	chr5	96958450	97029036	LNPEP|ENST00000395770.3	+	96958450,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029036	0.891304
OCI_LY7	chr7	99471746	99471779	99471746	-	RAMPAGE_only	6	6	24	1.576136	3.470176	chr7	99471609	99471877	SINE|Alu|AluSx1	+	chr7	99458194	99466331	ATP5MF|ENST00000292475.7	-	99458194,99459146,99460085,99466110	99458355,99459263,99460193,99466331	0.625000
OCI_LY7	chr4	6673446	6673447	6673446	+	High_confidence	118	118	121	7.946354	5.012201	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	0.975207
OCI_LY7	chr9	37375004	37375044	37375004	+	RAMPAGE_only	4	5	14	0.919413	3.334679	chr9	37374809	37375174	LTR|ERVL-MaLR|MLT1B	+	chr9	37319963	37375729	MSTRG.68035.1	+	37319963,37374433	37321625,37375729	0.785714
OCI_LY7	chr9	127906612	127906616	127906615	-	RAMPAGE_only	6	6	12	0.788068	3.251629	chr9	127906602	127906670	SINE|MIR|MIRc	-	chr9	127867849	127914762	MSTRG.69931.4	-	127867849,127868320,127871822,127872689,127873025,127874610,127879513,127885185,127887483,127890636,127894511,127896241,127905206,127905934,127912267,127914655	127868076,127868512,127871939,127872853,127873180,127874649,127879624,127886788,127887591,127891043,127894691,127896332,127905302,127910528,127912680,127914762	1.000000
OCI_LY7	chr7	38318979	38319001	38319000	-	High_confidence	4	4	16	1.050757	3.202820	chr7	38318855	38319140	LINE|L2|L2c	+	chr7	38317016	38318861	TRGV9|ENST00000444775.2	-	38317016,38317446	38317336,38318861	0.562500
OCI_LY7	chr2	196176330	196176332	196176331	-	High_confidence	945	1363	1759	115.517652	7.680316	chr2	196176299	196176378	LINE|RTE-BovB|MamRTE1	-	chr2	196137446	196176503	STK17B|ENST00000409228.5	-	196137446,196139619,196141248,196143559,196145910,196156438,196163261,196176225	196137729,196139799,196141297,196143686,196146055,196156651,196163427,196176503	0.632177
OCI_LY7	chr19	571754	571808	571754	-	High_confidence	19	26	100	6.567234	5.162565	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.890000
OCI_LY7	chr19	40716721	40716753	40716723	-	High_confidence	5	10	26	1.707481	4.023146	chr19	40716589	40716687	SINE|MIR|MIRc	-	chr19	40704167	40716885	COQ8B|ENST00000601451.5	-	40704167,40710058,40714066,40714277,40714530,40716586	40705447,40710136,40714133,40714397,40714635,40716885	0.653846
OCI_LY7	chr1	111128023	111128024	111128023	-	High_confidence	545	565	682	44.788538	6.383464	chr1	111127946	111128007	DNA|hAT-Charlie|Charlie7a	-	chr1	111118123	111128027	DRAM2|ENST00000461449.5	-	111118123,111118804,111119876,111120515,111126226,111127982	111118267,111118897,111119959,111120693,111126294,111128027	0.752199
OCI_LY7	chr11	65639851	65639872	65639871	+	High_confidence	6	7	24	1.576136	3.317640	chr11	65639882	65640011	SINE|MIR|MIRc	+	chr11	65639865	65650880	SIPA1|ENST00000527525.5	+	65639865,65640830,65642249,65642462,65644954,65645853,65646220,65646455,65646969,65647383,65649261,65649560,65649756,65649949,65650137,65650400,65650568	65640021,65641600,65642377,65642639,65645129,65645957,65646378,65646663,65647065,65647658,65649480,65649672,65649865,65650051,65650192,65650479,65650880	0.791667
OCI_LY7	chr17	4143196	4143215	4143199	+	High_confidence	36	36	122	8.012026	5.046801	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.959016
OCI_LY7	chr15	85330317	85330323	85330317	-	High_confidence	4	4	12	0.788068	3.095795	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314922	85330329	ADAMTS7P4|ENST00000558365.1	-	85314922,85319857,85330077	85314984,85319995,85330329	0.500000
OCI_LY7	chr6	2881420	2881424	2881423	-	High_confidence	5	8	13	0.853740	2.625815	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.846154
OCI_LY7	chr1	23627330	23627387	23627373	+	High_confidence	111	122	522	34.280963	7.014304	chr1	23627331	23627755	LINE|L2|L2a	+	chr1	23627333	23640549	MSTRG.1006.5	+	23627333,23628506,23629480,23639679	23627537,23628597,23629557,23640549	0.676245
OCI_LY7	chr1	173415697	173415698	173415697	+	High_confidence	436	438	533	35.003359	5.551584	chr1	173415608	173415750	SINE|MIR|MIRb	+	chr1	173415242	173439799	MSTRG.5082.1	+	173415242,173417459,173438767	173415736,173417603,173439799	0.600375
OCI_LY7	chr4	16233882	16233888	16233887	+	High_confidence	5	5	12	0.788068	3.027169	chr4	16233878	16234038	SINE|MIR|MIR3	+	chr4	16233265	16237135	MSTRG.50863.1	+	16233265	16237135	0.833333
OCI_LY7	chr15	78847663	78847664	78847663	+	High_confidence	17	17	18	1.182102	3.101881	chr15	78846690	78848069	LTR|ERV1|LTR12C	+	chr15	78847666	78886161	MORF4L1|ENST00000559697.5	+	78847666,78878212,78880511,78886140	78848081,78878259,78880579,78886161	0.555556
OCI_LY7	chr4	120749595	120749624	120749623	-	High_confidence	4	4	13	0.853740	2.565448	chr4	120749466	120749879	LINE|L1|L1MCc	+	chr4	120749265	120749585	MSTRG.52408.1	-	120749265	120749585	0.692308
OCI_LY7	chr9	62376797	62376839	62376800	-	High_confidence	7	7	19	1.247775	3.260828	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	1.000000
OCI_LY7	chr11	121590362	121590363	121590362	+	High_confidence	8	9	9	0.591051	2.750000	chr11	121590407	121590570	DNA|hAT-Charlie|MER5A1	+	chr11	121590418	121629684	SORL1|ENST00000527934.1	+	121590418,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121590897,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121629684	0.888889
OCI_LY7	chr12	24996948	24996990	24996948	-	High_confidence	4	4	12	0.788068	2.688722	chr12	24996810	24997110	SINE|Alu|AluSz	+	chr12	24995669	24996919	C12orf77|ENST00000434912.3	-	24995669,24996196,24996785	24996067,24996339,24996919	0.833333
OCI_LY7	chr12	25026224	25026225	25026224	+	High_confidence	157	162	175	11.492660	6.311221	chr12	25026176	25026681	LINE|L2|L2a	-	chr12	25026234	25066503	MSTRG.14352.4	+	25026234,25026788,25030277,25032141,25032304,25033847,25035652,25036584,25052234,25052793,25062819,25063719,25066364	25026329,25026866,25030334,25032201,25032369,25033947,25035787,25036631,25052349,25052956,25062900,25063816,25066503	0.617143
OCI_LY7	chr2	136397146	136397162	136397161	+	High_confidence	14	14	24	1.576136	3.803509	chr2	136397062	136397247	DNA|hAT-Charlie|MER5A	+	chr2	136397045	136522552	MSTRG.39478.1	+	136397045,136489595,136522267	136397694,136489683,136522552	0.750000
OCI_LY7	chr9	128684459	128684493	128684459	-	High_confidence	32	35	182	11.952367	5.940494	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128678833	128684442	MSTRG.70026.3	-	128678833,128682342	128681803,128684442	0.741758
OCI_LY7	chr2	61425428	61425451	61425438	+	High_confidence	59	60	133	8.734422	5.598819	chr2	61425138	61427042	LINE|L1|L1M1	+	chr2	61425337	61427597	MSTRG.37666.1	+	61425337	61427597	0.992481
OCI_LY7	chr11	4129109	4129117	4129116	+	RAMPAGE_only	3	3	7	0.459706	2.584963	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.857143
OCI_LY7	chr14	95516120	95516123	95516120	+	High_confidence	8	11	17	1.116430	3.219528	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	1.000000
OCI_LY7	chr2	54788170	54788175	54788170	+	High_confidence	812	863	1821	119.589338	7.754792	chr2	54787817	54788368	LTR|ERVL|MER73	+	chr2	54788143	54968235	MSTRG.37529.8	+	54788143,54813231,54816786,54820393,54827565,54829341,54844046,54847485,54849961,54853642,54859533,54863782,54866765,54869180,54871499,54879546,54891053,54892453,54894914,54895272,54899640,54903043,54903370,54910953,54916758,54928312,54928624,54948881,54950649,54952593,54953982,54957789,54959103,54960219,54962522,54963985,54964570,54966722,54968127	54788278,54813391,54816885,54820462,54827751,54829477,54844248,54847623,54850218,54853855,54859701,54863889,54866884,54869367,54871605,54879640,54891154,54892656,54895026,54895400,54902141,54903196,54903502,54911042,54916935,54928514,54928751,54948960,54950779,54952692,54954156,54957998,54959261,54960334,54962711,54964158,54964733,54967103,54968235	0.593081
OCI_LY7	chr7	107091460	107091476	107091460	+	High_confidence	5	6	18	1.182102	3.852169	chr7	107091484	107091866	DNA|TcMar-Tigger|MamRep137	+	chr7	107091675	107146462	PRKAR2B|ENST00000488792.1	+	107091675,107121951,107128211,107140846,107146307	107091885,107122004,107128295,107140953,107146462	0.666667
OCI_LY7	chr12	15985057	15985058	15985057	+	High_confidence	13	14	15	0.985085	3.093069	chr12	15984972	15985274	LINE|L1|L1ME2	-	chr12	15985171	16037282	MSTRG.14127.10	+	15985171,16032541,16036231,16036689	15985336,16032654,16036381,16037282	0.733333
OCI_LY7	chr12	118020920	118020939	118020920	+	RAMPAGE_only	4	4	12	0.788068	2.855389	chr12	118020805	118020941	LINE|CR1|L3	+	chr12	118024915	118027392	RFC5|ENST00000472603.1	+	118024915,118025746,118026888	118025010,118025828,118027392	0.666667
OCI_LY7	chrX	7219107	7219146	7219145	+	High_confidence	6	6	13	0.853740	3.546594	chrX	7218896	7219402	LTR|ERVL|LTR69	+	chrX	7219430	7354643	STS|NM_000351.5	+	7219430,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7219686,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.538462
OCI_LY7	chr20	3795740	3795823	3795788	+	High_confidence	21	22	170	11.164298	5.903231	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.994118
OCI_LY7	chr5	126604324	126604336	126604329	+	RAMPAGE_only	12	12	35	2.298532	3.805586	chr5	126604274	126604552	SINE|Alu|AluSz6	-	chr5	126600914	126627252	PHAX|NM_032177.3	+	126600914,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	0.885714
OCI_LY7	chr3	53197287	53197294	53197293	+	High_confidence	39	40	87	5.713494	4.846177	chr3	53197093	53197442	LTR|ERVL-MaLR|THE1C	+	chr3	53197113	53238280	MSTRG.47414.1	+	53197113,53198341,53227951,53237993	53197352,53198542,53228167,53238280	0.643678
OCI_LY7	chr22	31290272	31290308	31290307	-	High_confidence	4	4	16	1.050757	3.577820	chr22	31290108	31290412	SINE|Alu|AluSx	+	chr22	31281678	31290726	PIK3IP1|ENST00000493034.1	-	31281678,31289314,31289498,31289932	31283288,31289393,31289699,31290726	1.000000
OCI_LY7	chr7	65476105	65476134	65476118	+	High_confidence	82	82	149	9.785179	5.740531	chr7	65475782	65476228	LTR|ERV1|LTR21B	+	chr7	65476079	65488801	MSTRG.62728.1	+	65476079,65480271	65478611,65488801	1.000000
OCI_LY7	chr8	23243708	23243744	23243708	+	High_confidence	3	3	21	1.379119	3.787144	chr8	23243551	23243732	LTR|ERV1|LTR21A	+	chr8	23243636	23260286	MSTRG.65048.6	+	23243636,23249209,23255246,23256459,23258032,23258329,23258731,23259065,23260143	23246604,23249381,23255432,23256593,23258081,23258449,23258830,23259126,23260286	0.809524
OCI_LY7	chr14	95487719	95487764	95487741	+	High_confidence	24	24	130	8.537405	4.735428	chr14	95487532	95487813	LINE|L1|L1ME1	-	chr14	95487714	95503561	MSTRG.21288.1	+	95487714,95500732,95500967	95488004,95500831,95503561	0.907692
OCI_LY7	chr16	3129635	3129669	3129668	-	RAMPAGE_only	4	4	16	1.050757	3.030639	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3128832	3132042	ZNF213-AS1|ENST00000573447.1	-	3128832,3131746	3129653,3132042	0.875000
OCI_LY7	chr8	132956545	132956562	132956561	+	RAMPAGE_only	5	5	14	0.919413	2.753434	chr8	132956431	132956596	LINE|L2|L2c	-	chr8	132964606	133134903	TG|ENST00000519543.5	+	132964606,132966559,132967793,132969457,132971793,132972597,133011900,133013599,133017777,133019601,133021990,133029820,133095043,133096205,133113421,133116608,133131811,133133469,133134675	132964933,132966697,132967970,132969569,132971873,132972741,133012035,133013764,133017997,133019695,133022150,133030023,133095208,133096373,133113603,133116716,133131946,133133660,133134903	0.642857
OCI_LY7	chr14	106193403	106193437	106193405	+	High_confidence	580	1167	4255	279.435822	7.557366	chr14	106192967	106193706	LTR|ERVL-MaLR|MSTB-int	-	chr14	106193356	106210856	MSTRG.21687.2	+	106193356,106205075,106206077	106202463,106205151,106210856	0.993184
OCI_LY7	chr11	2386046	2386094	2386046	+	High_confidence	51	52	163	10.704592	5.933814	chr11	2385703	2386303	LINE|L1|L1ME2z	-	chr11	2386056	2396916	CD81|ENST00000381036.7	+	2386056,2386554,2390411,2394094,2394971,2395415,2395868,2396627,2396803	2386156,2386639,2390526,2394192,2395046,2395520,2395970,2396714,2396916	0.625767
OCI_LY7	chr5	141504438	141504443	141504438	+	RAMPAGE_only	2	2	9	0.591051	2.725481	chr5	141504340	141504508	LINE|L2|L2c	-	chr5	141489240	141512979	PCDHGC5|NM_018929.2	+	141489240,141494806,141505392,141510946	141491700,141494865,141505481,141512979	0.666667
OCI_LY7	chr14	106199199	106199258	106199199	+	RAMPAGE_only	7	7	19	1.247775	3.683542	chr14	106197571	106206819	LTR|ERV1|HERVS71-int	-	chr14	106193356	106210856	MSTRG.21687.3	+	106193356,106196759,106199016,106205075,106206077	106193913,106197002,106202463,106205151,106210856	0.947368
OCI_LY7	chr11	72111484	72111497	72111496	-	High_confidence	3	5	8	0.525379	2.750000	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	1.000000
OCI_LY7	chr12	122006649	122006695	122006673	-	RAMPAGE_only	12	12	71	4.662736	5.135437	chr12	122006656	122006856	SINE|MIR|MIRb	+	chr12	121959215	122020014	MSTRG.17165.1	-	121959215,122005611,122019699	121959630,122007934,122020014	0.929577
OCI_LY7	chr20	51619842	51619867	51619866	-	RAMPAGE_only	5	5	11	0.722396	2.550341	chr20	51619586	51619888	SINE|Alu|AluSp	+	chr20	51596513	51768328	ATP9A|ENST00000311637.9	-	51596513,51604816,51607526,51608517,51610100,51613676,51617489,51618661,51618953,51622073,51625191,51627599,51628979,51639342,51656937,51669996,51671114,51674152,51676131,51712965,51725818,51729833,51768301	51601347,51605020,51607584,51608626,51610165,51613832,51617554,51618806,51619043,51622172,51625362,51627683,51629072,51639504,51657150,51670109,51671257,51674313,51676208,51713074,51725932,51729978,51768328	0.545455
OCI_LY7	chr2	39919689	39919700	39919699	+	High_confidence	24	24	70	4.597064	5.168080	chr2	39919156	39921143	LINE|L1|L1MA4A	-	chr2	39919692	40255102	MSTRG.37110.10	+	39919692,40043417,40104908,40251683,40254419,40254508	39919893,40043542,40104962,40251774,40254452,40255102	0.514286
OCI_LY7	chr11	108225407	108225441	108225440	+	High_confidence	4	4	14	0.919413	3.039149	chr11	108225380	108225464	LINE|CR1|L3	+	chr11	108224782	108231594	ATM|ENST00000638443.1	+	108224782,108227594,108227775,108229177,108231487	108224871,108227696,108227888,108230912,108231594	0.571429
OCI_LY7	chr2	224490329	224490365	224490333	-	RAMPAGE_only	3	4	15	0.985085	3.182006	chr2	224490150	224490603	LTR|ERVK|LTR13	+	chr2	224473909	224495906	CUL3|ENST00000454323.1	-	224473909,224478199,224495831	224474376,224478345,224495906	0.800000
OCI_LY7	chr22	42721166	42721167	42721166	-	High_confidence	24	24	26	1.707481	3.288320	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.923077
OCI_LY7	chr15	100920614	100920615	100920614	-	RAMPAGE_only	7	10	10	0.656723	2.503258	chr15	100920598	100920830	LINE|L2|L2b	+	chr15	100913202	100919283	LOC101927751|NR_135831.1	-	100913202,100917887	100915980,100919283	0.700000
OCI_LY7	chr7	107091635	107091647	107091635	+	High_confidence	19	20	31	2.035843	4.098069	chr7	107091484	107091866	DNA|TcMar-Tigger|MamRep137	+	chr7	107091675	107146462	PRKAR2B|ENST00000488792.1	+	107091675,107121951,107128211,107140846,107146307	107091885,107122004,107128295,107140953,107146462	0.677419
OCI_LY7	chr7	101990100	101990121	101990120	+	RAMPAGE_only	2	2	6	0.394034	2.584963	chr7	101990076	101990361	SINE|Alu|AluJo	+	chr7	101959389	102104459	CUX1|ENST00000606749.1	+	101959389,102028097,102070338,102097363,102104335	101959601,102028145,102070417,102097501,102104459	0.666667
OCI_LY7	chr7	102337233	102337264	102337233	+	High_confidence	10	10	50	3.283617	4.119035	chr7	102337158	102337268	SINE|Alu|AluYe5	-	chr7	102337315	102339115	AC091390.2|ENST00000432573.1	+	102337315,102337579,102338931	102337402,102337682,102339115	0.780000
OCI_LY7	chr16	14606158	14606212	14606158	-	High_confidence	66	93	301	19.767375	5.507490	chr16	14606122	14606423	SINE|Alu|AluJb	+	chr16	14555653	14606391	MSTRG.25243.8	-	14555653,14580873,14582180,14584346,14584748,14586317,14593300,14599903,14604145,14606054	14555709,14580943,14582291,14584422,14584791,14586361,14593378,14599960,14604226,14606391	0.887043
OCI_LY7	chr3	126671757	126671762	126671757	+	RAMPAGE_only	3	3	8	0.525379	2.500000	chr3	126671313	126671811	LTR|ERVL-MaLR|MLT1F1	-	chr3	126704219	126960406	CHCHD6|NM_001320610.1	+	126704219,126727077,126730560,126733077,126852643,126914679,126957415,126960195	126704399,126727186,126730630,126733222,126852730,126914750,126957551,126960406	0.500000
OCI_LY7	chr19	34860565	34860634	34860609	-	High_confidence	19	19	154	10.113541	5.136040	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849149	34860634	MSTRG.34453.1	-	34849149,34860173	34849549,34860634	0.902597
OCI_LY7	chr6	36592326	36592350	36592326	-	RAMPAGE_only	4	4	12	0.788068	2.584963	chr6	36592079	36592373	SINE|Alu|AluJb	+	chr6	36591172	36594247	MSTRG.58539.1	-	36591172	36594247	0.916667
OCI_LY7	chr6	31494796	31494823	31494796	-	High_confidence	6	6	21	1.379119	4.021928	chr6	31494550	31494850	SINE|Alu|AluSp	+	chr6	31464923	31494716	MSTRG.58200.1	-	31464923,31494253	31465368,31494716	0.619048
OCI_LY7	chr8	48518073	48518082	48518081	-	High_confidence	73	74	106	6.961268	5.031633	chr8	48517923	48518278	LTR|ERVL-MaLR|THE1A	-	chr8	48515851	48517089	AC026904.1|ENST00000521359.1	-	48515851,48517057	48516356,48517089	0.867925
OCI_LY7	chr9	122406501	122406523	122406522	+	RAMPAGE_only	6	8	10	0.656723	2.721928	chr9	122405232	122406719	LTR|ERV1|LTR12C	-	chr9	122403406	122448977	AL359636.1|ENST00000433572.2	+	122403406,122404671,122415713,122416767,122447428,122448929	122403456,122404791,122415782,122416885,122447545,122448977	0.700000
OCI_LY7	chr17	79733224	79733249	79733243	-	High_confidence	29	31	117	7.683664	5.732978	chr17	79733061	79733306	LINE|L1|L1ME4b	-	chr17	79732350	79733245	MSTRG.31036.1	-	79732350	79733245	0.897436
OCI_LY7	chr4	2838255	2838268	2838255	+	RAMPAGE_only	3	3	11	0.722396	3.027169	chr4	2838108	2838543	LINE|L1|L1ME3B	-	chr4	2843856	2930076	ADD1|NM_176801.2	+	2843856,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763,2907742,2908514,2914883,2926013,2926641,2928170	2844024,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905108,2907844,2908604,2915040,2926112,2926675,2930076	0.636364
OCI_LY7	chr3	50226714	50226715	50226714	+	High_confidence	17	17	22	1.444792	3.321928	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	0.909091
OCI_LY7	chr14	106192903	106192909	106192903	+	High_confidence	2	2	7	0.459706	2.584963	chr14	106192536	106192954	LTR|ERVL-MaLR|MSTB	-	chr14	106192136	106210856	MSTRG.21687.1	+	106192136,106193853,106196759,106199202,106205075,106206077	106193660,106193913,106197002,106202463,106205151,106210856	0.857143
OCI_LY7	chr4	70663266	70663273	70663268	-	RAMPAGE_only	10	14	27	1.773153	4.083856	chr4	70663216	70663491	SINE|Alu|AluSz	-	chr4	70655540	70666631	JCHAIN|NM_144646.3	-	70655540,70657210,70662091,70666426	70656539,70657291,70662215,70666631	0.925926
OCI_LY7	chr1	244957738	244957741	244957740	+	High_confidence	70	86	104	6.829924	4.965211	chr1	244957552	244957935	LTR|ERVL-MaLR|MSTA	+	chr1	244957754	244958485	MSTRG.6812.1	+	244957754,244957972	244957853,244958485	0.932692
OCI_LY7	chr17	42117085	42117118	42117085	-	High_confidence	2	2	6	0.394034	2.584963	chr17	42117078	42117181	LINE|CR1|L3	+	chr17	42114223	42117489	MSTRG.29233.4	-	42114223,42114357,42114489,42114891,42117034	42114282,42114394,42114604,42115833,42117489	0.833333
OCI_LY7	chr13	40480948	40480986	40480975	+	High_confidence	4	4	23	1.510464	4.070656	chr13	40480963	40481330	LINE|L2|L2c	-	chr13	40480872	40482468	MSTRG.18031.1	+	40480872	40482468	0.869565
OCI_LY7	chr8	143281636	143281687	143281669	-	High_confidence	74	74	246	16.155397	5.427612	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280165	143281660	MINCR|ENST00000517411.1	-	143280165,143280881,143281481	143280515,143280997,143281660	0.516260
OCI_LY7	chr5	140700445	140700452	140700451	+	High_confidence	693	712	1838	120.705768	4.949886	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.989119
OCI_LY7	chr16	58421260	58421281	58421280	+	High_confidence	5	5	9	0.591051	2.500000	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421338	58462908	MSTRG.26355.14	+	58421338,58430386,58435691,58461470,58462153	58421421,58430493,58435823,58461582,58462908	0.888889
OCI_LY7	chr20	18413261	18413280	18413261	-	High_confidence	5	6	15	0.985085	3.773557	chr20	18413239	18413452	DNA|hAT-Tip100|MER91B	+	chr20	18393713	18413222	DZANK1|ENST00000480488.2	-	18393713,18394253,18396471,18398522,18412645,18412967	18393811,18394350,18396546,18398626,18412853,18413222	0.933333
OCI_LY7	chr22	39021146	39021161	39021155	+	High_confidence	108	108	438	28.764486	6.102068	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.972603
OCI_LY7	chr8	39192698	39192721	39192698	+	High_confidence	3	4	9	0.591051	3.000000	chr8	39191942	39195268	LINE|L1|L1PA13	-	chr8	39192318	39281333	MSTRG.65382.9	+	39192318,39221609,39223039,39232026,39233898,39246082,39254413,39257186,39270875,39274311,39275827,39281135	39194921,39221702,39223238,39232135,39234082,39246166,39254516,39257343,39270914,39274350,39275866,39281333	0.777778
OCI_LY7	chr14	106843597	106843664	106843597	+	High_confidence	11	18	74	4.859753	5.059540	chr14	106836775	106845293	LTR|ERV1|HERV3-int	-	chr14	106843588	106855826	MSTRG.21718.1	+	106843588,106850539	106845725,106855826	0.648649
OCI_LY7	chr22	45262928	45262963	45262960	-	High_confidence	9	16	36	2.364204	4.437577	chr22	45261670	45263284	LTR|ERV1|MER52D	-	chr22	45262272	45263585	AL008718.2|ENST00000609206.2	-	45262272	45263585	0.500000
OCI_LY7	chr6	2879539	2879545	2879544	-	RAMPAGE_only	21	22	33	2.167187	3.530025	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.909091
OCI_LY7	chr9	114394380	114394413	114394412	-	High_confidence	5	7	10	0.656723	2.721928	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	1.000000
OCI_LY7	chr5	141529848	141529887	141529886	-	High_confidence	63	63	251	16.483758	5.265852	chr5	141529801	141530088	SINE|Alu|AluJb	+	chr5	141515015	141529893	MSTRG.56228.1	-	141515015,141524142,141526037,141526296,141527572,141528452,141528701,141529171	141517008,141524229,141526173,141526461,141527697,141528582,141528941,141529893	0.992032
OCI_LY7	chr3	23390613	23390627	23390624	-	High_confidence	26	26	72	4.728409	4.742516	chr3	23390116	23390825	LTR|ERV1|LTR1F2	+	chr3	23332178	23389909	MSTRG.46423.3	-	23332178,23343450,23389199	23332440,23343568,23389909	0.555556
OCI_LY7	chr18	15316227	15316255	15316243	-	RAMPAGE_only	6	8	20	1.313447	3.405822	chr18	15316082	15316600	LTR|ERV1|LTR10A	-	chr18	15313555	15325919	LOC644669|NR_027417.1	-	15313555,15315498,15319503,15323255,15325660,15325892	15314116,15316765,15319568,15323362,15325730,15325919	0.650000
OCI_LY7	chr18	12420026	12420027	12420026	+	High_confidence	9	9	14	0.919413	3.085055	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12420016	12429364	PRELID3A|ENST00000587862.5	+	12420016,12420324,12421539,12427040,12427220,12429349	12420148,12420493,12421629,12427111,12427323,12429364	0.785714
OCI_LY7	chr9	121207789	121207798	121207793	+	High_confidence	75	78	174	11.426988	5.555451	chr9	121207755	121207923	SINE|Alu|AluJb	-	chr9	121207793	121265186	GSN|ENST00000434663.5	+	121207793,121209295,121210235,121210783,121231164,121265153	121207897,121209397,121210329,121210867,121231303,121265186	0.729885
OCI_LY7	chr2	65601604	65601677	65601651	-	High_confidence	13	13	72	4.728409	5.444027	chr2	65599971	65601831	Retroposon|SVA|SVA_D	-	chr2	65598382	65601650	MSTRG.37938.2	-	65598382,65601156	65599882,65601650	0.791667
OCI_LY7	chr12	1203309	1203318	1203309	+	High_confidence	7	7	14	0.919413	3.085055	chr12	1203070	1203357	SINE|Alu|AluSx	-	chr12	1203965	1263073	ERC1|ENST00000544277.1	+	1203965,1204500,1236768,1263033	1204096,1204512,1236904,1263073	0.500000
OCI_LY7	chr17	18856169	18856213	18856196	-	High_confidence	17	17	57	3.743324	4.924567	chr17	18856136	18856308	LTR|ERVL-MaLR|MLT1K	-	chr17	18855764	18856187	MSTRG.28358.1	-	18855764	18856187	0.701754
OCI_LY7	chr10	98162736	98162746	98162736	+	High_confidence	5	5	15	0.985085	3.240224	chr10	98162713	98162997	SINE|Alu|AluJb	-	chr10	98162882	98244892	MSTRG.9259.6	+	98162882,98163292,98186466,98208100,98231511,98234445,98235424,98236023,98244090	98162975,98163397,98186563,98209899,98231687,98234516,98235520,98236164,98244892	0.800000
OCI_LY7	chr16	30445874	30445877	30445876	-	High_confidence	8	15	16	1.050757	3.202820	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	1.000000
OCI_LY7	chr13	46388162	46388173	46388172	-	High_confidence	12	12	41	2.692566	4.500981	chr13	46387925	46388226	SINE|Alu|AluSx1	+	chr13	46368073	46388162	MSTRG.18190.12	-	46368073,46368732,46371940,46387676,46387966	46368249,46368815,46372597,46387879,46388162	0.707317
OCI_LY7	chr22	41940217	41940222	41940221	-	High_confidence	8	8	16	1.050757	3.373557	chr22	41939903	41940386	LINE|L2|L2a	+	chr22	41938720	41940219	CENPM|NM_001110215.2	-	41938720,41940138	41939196,41940219	0.625000
OCI_LY7	chr22	35893117	35893121	35893117	-	RAMPAGE_only	10	11	16	1.050757	2.973557	chr22	35893095	35893298	DNA|hAT-Charlie|Charlie17a	-	chr22	35743982	35938897	RBFOX2|ENST00000359369.8	-	35743982,35745922,35746472,35750425,35756104,35759887,35761201,35761414,35765422,35768256,35778024,35781599,35809779,35938846	35744249,35745995,35746561,35750457,35756144,35760020,35761294,35761468,35765483,35768349,35778078,35781743,35810004,35938897	0.562500
OCI_LY7	chr3	22200341	22200342	22200341	+	RAMPAGE_only	9	9	9	0.591051	2.947703	chr3	22200223	22201292	LTR|ERVK|MER11C	-	chr3	22381818	22382460	HMGB1P5|ENST00000255320.6	+	22381818	22382460	1.000000
OCI_LY7	chrX	150696622	150696659	150696625	+	RAMPAGE_only	13	15	42	2.758238	4.765731	chrX	150696543	150696734	LTR|ERVL-MaLR|MLT1K	-	chrX	150699207	150765102	MSTRG.72733.13	+	150699207,150718624,150727214,150727683,150730108,150730524,150731469,150732541,150736594,150737241,150744360,150750729,150755688,150762564,150764511	150699300,150718700,150727309,150727791,150730210,150730608,150731619,150732730,150736780,150737448,150744453,150750843,150755865,150764328,150765102	0.642857
OCI_LY7	chr10	124143750	124143763	124143762	-	High_confidence	21	22	54	3.546307	5.051047	chr10	124143407	124143809	LTR|ERVL-MaLR|MSTC	-	chr10	124135199	124143793	MSTRG.9882.1	-	124135199,124139295,124140063,124143470	124135346,124139488,124140471,124143793	0.888889
OCI_LY7	chr1	148156152	148156164	148156163	+	High_confidence	4	4	9	0.591051	2.750000	chr1	148155782	148156403	LTR|ERV1|MER51D	+	chr1	148156100	148158464	MSTRG.4057.1	+	148156100,148156789	148156406,148158464	0.666667
OCI_LY7	chr21	42062863	42062880	42062879	+	High_confidence	13	14	44	2.889583	4.570354	chr21	42062850	42063274	LTR|ERVL-MaLR|MLT1C	-	chr21	42062526	42069149	MSTRG.43845.1	+	42062526,42067474	42066148,42069149	1.000000
OCI_LY7	chr3	60081227	60081228	60081227	-	High_confidence	28	34	35	2.298532	4.314973	chr3	60081115	60081306	DNA|hAT-Charlie|MER5A	+	chr3	59747277	60081127	FHIT|NM_001320901.1	-	59747277,59922345,60011370,60014006,60014205,60070858,60080790	59752321,59922414,60011400,60014075,60014264,60070939,60081127	0.514286
OCI_LY7	chr4	143398759	143398791	143398790	+	RAMPAGE_only	10	10	18	1.182102	3.530493	chr4	143398777	143398908	SINE|Alu|FLAM_C	+	chr4	143391509	143433716	GAB1|ENST00000509992.1	+	143391509,143395816,143415476,143433490	143391558,143395989,143415771,143433716	0.833333
OCI_LY7	chr2	226905223	226905238	226905237	+	RAMPAGE_only	4	6	10	0.656723	3.121928	chr2	226905196	226905266	LINE|L2|L2a	-	chr2	226906746	226995755	RHBDD1|ENST00000491490.5	+	226906746,226908821,226914207,226995430	226907021,226908878,226914351,226995755	0.900000
OCI_LY7	chr7	101217598	101217599	101217598	-	High_confidence	5	5	7	0.459706	2.521641	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
OCI_LY7	chrX	148574787	148574841	148574831	+	RAMPAGE_only	18	30	69	4.531392	5.002673	chrX	148574724	148574878	SINE|MIR|MIRb	-	chrX	148501046	148991402	AFF2|ENST00000370457.9	+	148501046,148651998,148661907,148809875,148842965,148843381,148885888,148904220,148953579,148955602,148958336,148962714,148966789,148967628,148973470,148977932,148978361,148980737,148987366,148991210	148501144,148652131,148662768,148809920,148843002,148843415,148885985,148904258,148953739,148956613,148958458,148962937,148967079,148967692,148973607,148978004,148978455,148980790,148987557,148991402	0.956522
OCI_LY7	chr20	48359890	48359913	48359890	+	High_confidence	5	5	28	1.838826	3.309719	chr20	48359855	48360168	LINE|L2|L2b	+	chr20	48359910	48370638	LINC00494|NR_026958.1	+	48359910,48364888,48366473,48366735,48368079	48360150,48365197,48366633,48367059,48370638	0.821429
OCI_LY7	chr5	181173547	181173561	181173547	-	High_confidence	10	10	39	2.561221	4.458793	chr5	181173369	181173517	SINE|Alu|AluJb	-	chr5	181170981	181173612	MSTRG.57109.1	-	181170981,181172953	181171324,181173612	0.794872
OCI_LY7	chr1	22428861	22428871	22428861	+	High_confidence	8	8	19	1.247775	3.308271	chr1	22428699	22428944	LTR|ERVL-MaLR|MLT1J	+	chr1	22428837	22511763	ZBTB40|ENST00000650433.1	+	22428837,22489879,22491399,22506048,22508000,22508529,22509099,22511178,22511675	22429014,22490645,22491533,22506241,22508137,22508731,22509233,22511347,22511763	0.578947
OCI_LY7	chr6	18359147	18359160	18359159	-	RAMPAGE_only	17	17	59	3.874668	5.124086	chr6	18353782	18359333	LINE|L1|L1PA5	-	chr6	18356585	18360437	MSTRG.57628.1	-	18356585	18360437	1.000000
OCI_LY7	chr17	6853863	6853910	6853886	+	High_confidence	14	14	78	5.122443	5.743548	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853860	6902192	ALOX12P2|ENST00000574727.5	+	6853860,6854213,6892002,6894317,6894883,6895095,6895342,6896315,6896553,6898528,6898799,6899390,6899592,6899867	6854060,6854435,6892075,6894513,6895006,6895199,6895503,6896459,6896763,6898698,6898929,6899490,6899760,6902192	0.743590
OCI_LY7	chr2	70257706	70257707	70257706	+	High_confidence	8	8	8	0.525379	2.750000	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.875000
OCI_LY7	chr5	1525856	1525885	1525884	+	RAMPAGE_only	13	13	41	2.692566	4.053066	chr5	1525718	1526069	LTR|ERVL-MaLR|MLT1B	+	chr5	1524093	1527887	MSTRG.53479.1	+	1524093,1527352,1527567	1526082,1527423,1527887	0.634146
OCI_LY7	chr2	88779237	88779254	88779237	+	RAMPAGE_only	3	3	9	0.591051	2.503258	chr2	88778211	88779267	LINE|L1|L1PA7	+	chr2	88782711	88805403	ANKRD36BP2|ENST00000575193.1	+	88782711,88782852,88784597,88784720,88786469,88786590,88788317,88788441,88792420,88797281,88801053,88802712,88804379,88804786,88805378	88782762,88782925,88784626,88784793,88786498,88786663,88788346,88788514,88792494,88797423,88801309,88802865,88804450,88804880,88805403	0.777778
OCI_LY7	chr15	75198916	75198920	75198919	+	High_confidence	5	5	12	0.788068	2.550341	chr15	75198623	75199037	LTR|ERV1|MER51A	-	chr15	75198865	75206135	C15orf39|ENST00000562637.1	+	75198865,75201960,75205998	75199161,75202059,75206135	0.750000
OCI_LY7	chr12	8788246	8788253	8788252	+	High_confidence	131	143	242	15.892707	5.961701	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.818182
OCI_LY7	chr14	95487931	95487943	95487937	+	High_confidence	32	34	76	4.991098	5.023745	chr14	95487813	95488259	DNA|TcMar-Tigger|Tigger2a	+	chr14	95487714	95503561	MSTRG.21288.1	+	95487714,95500732,95500967	95488004,95500831,95503561	0.802632
OCI_LY7	chr13	113815608	113815609	113815608	+	RAMPAGE_only	30	31	40	2.626894	4.415312	chr13	113815414	113815766	LTR|ERVL-MaLR|THE1A	+	chr13	113759242	113816995	TMEM255B|ENST00000375353.4	+	113759242,113766114,113769097,113795147,113799338,113800826,113801652,113804884,113811735	113759315,113766257,113769160,113795237,113799419,113800912,113801812,113805028,113816995	0.750000
OCI_LY7	chr11	129947585	129947654	129947653	-	High_confidence	43	46	393	25.809231	6.558883	chr11	129947526	129947913	LTR|ERVL|LTR52	+	chr11	129899705	129947622	PRDM10|NM_199438.1	-	129899705,129905637,129910475,129912123,129914703,129915659,129917126,129918538,129923247,129924881,129929409,129931015,129932101,129935100,129937597,129942425,129944770,129947144	129902516,129905741,129910656,129912225,129915018,129915860,129917237,129918718,129923403,129925229,129929421,129931258,129932231,129935218,129937670,129942629,129945012,129947622	0.969466
OCI_LY7	chr4	70993073	70993074	70993073	+	High_confidence	42	42	49	3.217945	4.335709	chr4	70992983	70993102	SINE|MIR|MIR	+	chr4	70993438	71030914	DCK|ENST00000286648.9	+	70993438,70998066,71022366,71023558,71025815,71026664,71029351	70993926,70998182,71022560,71023706,71025931,71026755,71030914	0.979592
OCI_LY7	chr1	171251849	171251857	171251849	-	High_confidence	74	78	226	14.841950	6.155084	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	170962715	171251794	MSTRG.5035.1	-	170962715,171168103,171247580,171251522	170967097,171168188,171247727,171251794	0.823009
OCI_LY7	chr2	200887966	200887981	200887966	-	High_confidence	3	3	11	0.722396	3.095795	chr2	200887775	200888074	SINE|Alu|AluSx1	+	chr2	200871151	200887687	PPIL3|ENST00000415562.5	-	200871151,200876918,200881420,200882341,200885697,200887612	200871521,200877037,200881488,200882382,200885772,200887687	0.636364
OCI_LY7	chr21	42534417	42534459	42534417	-	High_confidence	85	85	141	9.259800	6.093997	chr21	42533957	42534487	LINE|L1|L1ME3	-	chr21	42521765	42535031	MSTRG.43867.5	-	42521765,42528182,42534142	42526260,42528825,42535031	0.893617
OCI_LY7	chr19	49388461	49388471	49388461	-	High_confidence	3	3	8	0.525379	2.750000	chr19	49388452	49388709	SINE|Alu|AluSc8	+	chr19	49368704	49388081	LOC101928295|NR_110729.1	-	49368704,49382850,49387355	49371143,49382948,49388081	0.625000
OCI_LY7	chr1	110871186	110871201	110871187	+	High_confidence	62	95	231	15.170311	5.902291	chr1	110870731	110871665	LINE|L2|L2b	-	chr1	110871187	110899922	CD53|ENST00000648608.1	+	110871187,110873155,110891391,110892344,110894326,110894959,110896652,110897808,110899123	110871259,110873248,110891471,110892533,110894401,110895055,110896733,110897892,110899922	0.874459
OCI_LY7	chr16	20674497	20674498	20674497	+	High_confidence	15	15	17	1.116430	3.337175	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	1.000000
OCI_LY7	chr14	65318794	65318806	65318794	-	High_confidence	6	6	13	0.853740	3.251629	chr14	65318645	65318866	LINE|L2|L2c	-	chr14	65253700	65318790	AL355076.2|ENST00000553754.1	-	65253700,65269444,65318490	65253906,65269512,65318790	0.538462
OCI_LY7	chr17	78632016	78632064	78632016	-	High_confidence	149	156	482	31.654070	6.559351	chr17	78632006	78632221	DNA|hAT-Charlie|MER1A	+	chr17	78617376	78632011	LINC02081|ENST00000590023.6	-	78617376,78621666,78624191,78630031,78631989	78617626,78621733,78624315,78630430,78632011	0.836100
OCI_LY7	chr15	75007499	75007511	75007504	+	RAMPAGE_only	15	15	45	2.955255	4.611857	chr15	75007388	75007556	SINE|Alu|AluJo	-	chr15	75011657	75018467	SCAMP5|ENST00000564779.5	+	75011657,75011791,75012676,75016592,75017869,75018417	75011680,75011846,75012805,75016749,75017971,75018467	0.711111
OCI_LY7	chr3	13339871	13339901	13339871	-	RAMPAGE_only	4	4	14	0.919413	2.565448	chr3	13339600	13339877	LINE|CR1|L3	+	chr3	13316234	13420309	NUP210|ENST00000254508.6	-	13316234,13319071,13319229,13319762,13321584,13322192,13323308,13325794,13327216,13328770,13330459,13332292,13335453,13336786,13337836,13339853,13340235,13341747,13341995,13343174,13351878,13352079,13353553,13353914,13358221,13360269,13365945,13371833,13373717,13375503,13376290,13377455,13378911,13379562,13386274,13388302,13391210,13397356,13399724,13420059	13317781,13319155,13319325,13319979,13321835,13322339,13323432,13325931,13327437,13328946,13330634,13332384,13335612,13336918,13337917,13340033,13340298,13341883,13342123,13343303,13351980,13352184,13353660,13354107,13358395,13360491,13366091,13372032,13373873,13375641,13376431,13377562,13378980,13379721,13386407,13388453,13391307,13397488,13399861,13420309	0.928571
OCI_LY7	chr3	186999511	186999537	186999511	+	RAMPAGE_only	8	9	19	1.247775	3.530493	chr3	186999413	186999708	SINE|Alu|AluY	-	chr3	186986315	187042998	ST6GAL1|ENST00000448408.5	+	186986315,186996547,187038741,187042653	186986717,186996673,187038873,187042998	0.526316
OCI_LY7	chr19	35900920	35900945	35900944	+	RAMPAGE_only	5	6	15	0.985085	2.692381	chr19	35900850	35901131	SINE|Alu|AluSx1	-	chr19	35902479	35904271	HCST|NM_014266.3	+	35902479,35903350,35903771,35904119	35902636,35903416,35903903,35904271	0.933333
OCI_LY7	chr14	106193851	106193885	106193867	+	High_confidence	5	10	30	1.970170	4.035582	chr14	106193712	106194474	LINE|L1|L1P4	-	chr14	106193356	106210856	MSTRG.21687.2	+	106193356,106205075,106206077	106202463,106205151,106210856	0.933333
OCI_LY7	chr12	9569162	9569176	9569162	+	RAMPAGE_only	5	6	13	0.853740	2.661226	chr12	9568603	9569205	LTR|ERV1|HERVE-int	-	chr12	9557313	9576275	AC092821.1|ENST00000520314.2	+	9557313,9558368,9559174,9560109,9560816,9565091,9567489,9570765,9571460,9573002,9573465,9574846	9557580,9558452,9559348,9560191,9564325,9565303,9569202,9570892,9571573,9573093,9573534,9576275	1.000000
OCI_LY7	chr2	55618850	55618870	55618850	-	High_confidence	12	14	24	1.576136	3.767894	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	1.000000
OCI_LY7	chr6	2881568	2881668	2881635	-	High_confidence	115	115	375	24.627129	6.350029	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2853652	2881627	MSTRG.57179.2	-	2853652,2881525	2855690,2881627	0.856000
OCI_LY7	chr16	16007336	16007357	16007336	+	High_confidence	9	13	26	1.707481	3.538320	chr16	16007245	16007523	SINE|Alu|AluSz	-	chr16	16007421	16111461	MSTRG.25315.4	+	16007421,16007815,16009775,16014490,16016495,16033108,16036471,16044449,16045835,16048141,16052723,16056091,16068155,16071641,16076325,16079351,16083365,16086823,16090404,16102626,16106737,16111374	16007590,16007992,16009901,16014628,16016621,16033170,16036603,16044680,16046013,16048303,16052816,16056295,16068302,16071729,16076401,16079478,16083542,16086991,16090588,16102717,16106873,16111461	0.730769
OCI_LY7	chr1	156157806	156157863	156157857	+	RAMPAGE_only	11	14	29	1.904498	3.797468	chr1	156157787	156157882	SINE|MIR|MIR	-	chr1	156156424	156175232	SEMA4A|ENST00000487358.5	+	156156424,156158069,156158387,156158671,156160442,156160904,156161345,156162943,156172825,156174821,156175085	156156574,156158132,156158486,156158824,156160559,156161029,156161518,156163094,156173006,156174940,156175232	0.793103
OCI_LY7	chr9	37903557	37903558	37903557	-	High_confidence	8	8	8	0.525379	2.500000	chr9	37903533	37903620	SINE|MIR|MIR3	+	chr9	37887603	37904110	SLC25A51|ENST00000377716.6	-	37887603,37899828,37903530	37888592,37899950,37904110	0.875000
OCI_LY7	chr2	54755722	54755777	54755722	-	High_confidence	6	6	31	2.035843	3.947123	chr2	54755663	54755876	SINE|Alu|AluJb	-	chr2	54754491	54755841	MSTRG.37531.1	-	54754491	54755841	1.000000
OCI_LY7	chr12	15985139	15985218	15985139	+	High_confidence	38	38	187	12.280728	6.638801	chr12	15984972	15985274	LINE|L1|L1ME2	-	chr12	15985171	16037282	MSTRG.14127.10	+	15985171,16032541,16036231,16036689	15985336,16032654,16036381,16037282	0.807487
OCI_LY7	chr12	116714533	116714534	116714533	-	RAMPAGE_only	4	6	7	0.459706	2.584963	chr12	116714512	116714816	SINE|Alu|AluSx	+	chr12	116710184	116738061	C12orf49|ENST00000261318.4	-	116710184,116719762,116720295,116723066,116737789	116717893,116719876,116720447,116723223,116738061	0.857143
omental_fat_pad_female_adult_51_years	chr2	72693342	72693354	72693353	-	RAMPAGE_only	32	36	56	3.264327	4.604166	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72373968	72733230	STRG.8034.4	-	72373968,72379728,72465159,72480615,72492317,72495429,72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070	72379110,72379870,72465339,72480750,72492429,72495539,72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733230	0.964286
omental_fat_pad_female_adult_51_years	chr11	9775665	9775676	9775675	+	High_confidence	3	3	7	0.408041	2.521641	chr11	9775466	9776058	LTR|ERVL|MER21C	+	chr11	9775730	9808379	SBF2-AS1|ENST00000534671.1	+	9775730,9780375,9807847	9775765,9780575,9808379	1.000000
omental_fat_pad_female_adult_51_years	chr1	162759939	162759976	162759975	+	RAMPAGE_only	3	3	10	0.582916	2.521928	chr1	162760014	162760180	SINE|MIR|MIR3	+	chr1	162632469	162780421	DDR2|ENST00000367921.7	+	162632469,162655210,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162780421	1.000000
omental_fat_pad_female_adult_51_years	chr6	108960936	108960937	108960936	+	High_confidence	30	30	39	2.273370	4.385957	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108961035	108974995	STRG.25740.1	+	108961035,108962013,108964179,108964979,108973356	108961694,108962127,108964312,108965140,108974995	0.871795
omental_fat_pad_female_adult_51_years	chr13	43055406	43055407	43055406	+	RAMPAGE_only	4	4	7	0.408041	2.521641	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.571429
omental_fat_pad_female_adult_51_years	chr4	86453164	86453203	86453202	-	High_confidence	35	38	216	12.590975	5.951792	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.861111
omental_fat_pad_female_adult_51_years	chr12	79543354	79543411	79543367	-	High_confidence	39	39	120	6.994986	5.914950	chr12	79543260	79543408	LTR|ERV1|HERVH-int	+	chr12	79542898	79543440	STRG.46537.4	-	79542898	79543440	0.775000
omental_fat_pad_female_adult_51_years	chr8	102930311	102930312	102930311	+	High_confidence	5	5	7	0.408041	2.584963	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	103002430	STRG.33535.1	+	102930181,102937623,102941920,102977586,103000008	102930518,102937757,102942053,102978955,103002430	0.714286
omental_fat_pad_female_adult_51_years	chr6	48111154	48111181	48111177	-	RAMPAGE_only	5	5	29	1.690455	4.307355	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47878027	48068689	PTCHD4|NM_001013732.3	-	47878027,48008633,48068229	47879936,48009114,48068689	0.551724
omental_fat_pad_female_adult_51_years	chr7	64999419	64999444	64999443	-	High_confidence	7	7	12	0.699499	3.459432	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64976784	65000356	STRG.28778.2	-	64976784,64981386,64981983,64989946,64999120	64979536,64981482,64982116,64993414,65000356	0.833333
omental_fat_pad_female_adult_51_years	chr3	134485443	134485490	134485443	-	High_confidence	9	9	47	2.739703	4.862507	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.851064
omental_fat_pad_female_adult_51_years	chr1	154975505	154975546	154975545	+	High_confidence	2	2	9	0.524624	2.503258	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975538	154978916	CKS1B|ENST00000473344.1	+	154975538,154977986,154978724	154975608,154978114,154978916	0.666667
omental_fat_pad_female_adult_51_years	chr6	137218725	137218732	137218725	-	High_confidence	4	4	8	0.466332	2.750000	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	1.000000
omental_fat_pad_female_adult_51_years	chr14	101731413	101731414	101731413	+	High_confidence	17	17	24	1.398997	4.229871	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.750000
omental_fat_pad_female_adult_51_years	chr5	176716501	176716513	176716501	+	High_confidence	13	13	21	1.224123	3.646439	chr5	176716319	176717057	LINE|L1|HAL1	-	chr5	176715840	176723726	STRG.22891.1	+	176715840,176716833,176720742	176716486,176716951,176723726	0.952381
omental_fat_pad_female_adult_51_years	chr16	66518000	66518027	66518026	-	High_confidence	4	4	8	0.466332	2.521641	chr16	66517998	66518159	LTR|ERVL|LTR91	-	chr16	66511683	66518142	TK2|ENST00000562552.5	-	66511683,66513730,66517135,66517788	66512066,66513811,66517215,66518142	0.875000
omental_fat_pad_female_adult_51_years	chr7	88283892	88283918	88283892	-	RAMPAGE_only	2	2	11	0.641207	2.663533	chr7	88283844	88283877	LINE|RTE-BovB|MamRTE1	-	chr7	88281482	88306880	STEAP4|ENST00000414498.1	-	88281482,88283813,88290915,88306791	88283168,88284271,88291014,88306880	0.909091
omental_fat_pad_female_adult_51_years	chr2	179043807	179043808	179043807	-	RAMPAGE_only	25	26	31	1.807038	4.456565	chr2	179042647	179044414	LINE|L1|L1PA10	+	chr2	178829756	179050059	CCDC141|NM_173648.3	-	178829756,178836893,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900,178886751,178888526,178905328,178918712,178944534,178961229,178975056,178978483,179047283,179049839	178834440,178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178885092,178886871,178888668,178905501,178918907,178944651,178961483,178975165,178978675,179047406,179050059	0.903226
omental_fat_pad_female_adult_51_years	chr13	52236177	52236183	52236182	-	High_confidence	5	6	9	0.524624	2.947703	chr13	52235788	52236194	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.555556
omental_fat_pad_female_adult_51_years	chr6	130978738	130978739	130978738	-	High_confidence	7	9	11	0.641207	2.663533	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	1.000000
omental_fat_pad_female_adult_51_years	chr12	13044158	13044159	13044158	+	High_confidence	20	20	28	1.632163	4.280395	chr12	13044134	13044231	SINE|MIR|MIRb	-	chr12	13044283	13083449	FAM234B|ENST00000197268.12	+	13044283,13055550,13058450,13061574,13062844,13066639,13067154,13068303,13068629,13071240,13076025,13079788,13080624	13044440,13055946,13058549,13061763,13062975,13066787,13067296,13068447,13068711,13071396,13076143,13080009,13083449	0.892857
omental_fat_pad_female_adult_51_years	chr1	26832019	26832020	26832019	+	High_confidence	5	5	7	0.408041	2.584963	chr1	26831803	26832078	LINE|L2|L2b	+	chr1	26832019	26851174	ZDHHC18|ENST00000534643.5	+	26832019,26832446,26848607,26850300,26850557,26851128	26832072,26832607,26848757,26850438,26850606,26851174	0.571429
omental_fat_pad_female_adult_51_years	chr16	8842279	8842315	8842279	+	High_confidence	4	5	14	0.816082	3.235926	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.928571
omental_fat_pad_female_adult_51_years	chr3	44439839	44439875	44439852	-	RAMPAGE_only	6	7	30	1.748747	4.107011	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431719	44477670	ZNF445|ENST00000396077.7	-	44431719,44449512,44450446,44450867,44451313,44455120,44458243,44477590	44448739,44449623,44450573,44450962,44451482,44455696,44458364,44477670	0.533333
omental_fat_pad_female_adult_51_years	chr7	102822445	102822459	102822458	-	RAMPAGE_only	7	8	14	0.816082	3.085055	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.571429
omental_fat_pad_female_adult_51_years	chr22	18149858	18149869	18149863	+	High_confidence	9	9	29	1.690455	4.208410	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.931034
omental_fat_pad_female_adult_51_years	chr17	39927960	39927961	39927960	-	High_confidence	5	5	8	0.466332	2.750000	chr17	39927855	39928002	SINE|MIR|MIRc	-	chr17	39921040	39927804	ORMDL3|NM_139280.3	-	39921040,39923111,39924029,39927483	39922685,39923263,39924225,39927804	1.000000
omental_fat_pad_female_adult_51_years	chr6	135874136	135874183	135874182	+	RAMPAGE_only	7	9	26	1.515580	4.136842	chr6	135873879	135874228	LINE|L2|L2a	-	chr6	135851695	136195574	PDE7B|ENST00000308191.10	+	135851695,135947463,136108730,136147350,136149086,136151159,136154074,136155626,136173796,136178996,136181226,136187035,136191613	135852019,135947524,136108814,136147502,136149150,136151255,136154175,136155758,136173888,136179141,136181323,136187116,136195574	0.615385
omental_fat_pad_female_adult_51_years	chr15	74174548	74174572	74174571	+	High_confidence	60	66	160	9.326648	4.767207	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	0.975000
omental_fat_pad_female_adult_51_years	chr1	78620056	78620057	78620056	+	High_confidence	7	8	8	0.466332	2.750000	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78619921	78628207	IFI44L|ENST00000452835.1	+	78619921,78620456,78627905	78620058,78620571,78628207	1.000000
omental_fat_pad_female_adult_51_years	chr10	118322375	118322379	118322378	-	RAMPAGE_only	5	5	9	0.524624	2.500000	chr10	118322113	118322801	LINE|L1|L1MC4	+	chr10	118310635	118326349	FAM204A|ENST00000491416.5	-	118310635,118311206,118326153	118310908,118311313,118326349	0.555556
omental_fat_pad_female_adult_51_years	chr18	46087038	46087061	46087042	-	High_confidence	3	3	9	0.524624	3.000000	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.888889
omental_fat_pad_female_adult_51_years	chr13	106561950	106561951	106561950	-	High_confidence	17	18	19	1.107539	3.787144	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.842105
omental_fat_pad_female_adult_51_years	chr12	79455468	79455537	79455514	-	High_confidence	48	54	253	14.747762	6.710382	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.778656
omental_fat_pad_female_adult_51_years	chr16	27332368	27332389	27332388	+	RAMPAGE_only	5	5	10	0.582916	2.921928	chr16	27332160	27332534	LTR|ERVL-MaLR|THE1C	-	chr16	27341288	27364777	IL4R|ENST00000170630.6	+	27341288,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27364777	0.500000
omental_fat_pad_female_adult_51_years	chr19	54448601	54448604	54448601	+	High_confidence	5	5	10	0.582916	2.725481	chr19	54448651	54448966	SINE|Alu|AluSg	+	chr19	54448886	54462037	LENG8|ENST00000326764.9	+	54448886,54451289,54452092,54452650,54453545,54454429,54454950,54455363,54455966,54456324,54456635,54457746,54457933,54458102,54458313,54460765	54449310,54451382,54452267,54452752,54453656,54454682,54455092,54455567,54456245,54456465,54456921,54457848,54458002,54458232,54458521,54462037	0.900000
omental_fat_pad_female_adult_51_years	chr9	72295108	72295109	72295108	+	RAMPAGE_only	10	10	10	0.582916	2.646439	chr9	72295156	72295467	SINE|Alu|AluJb	+	chr9	73151730	73170393	ANXA1|NM_000700.2	+	73151730,73158521,73158694,73159328,73160262,73160802,73162781,73163475,73165115,73166096,73167496,73169031,73170050	73151924,73158601,73158803,73159423,73160376,73160893,73162861,73163532,73165209,73166192,73167555,73169154,73170393	1.000000
omental_fat_pad_female_adult_51_years	chr14	81170392	81170420	81170402	-	High_confidence	12	13	51	2.972869	4.760086	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.960784
omental_fat_pad_female_adult_51_years	chr19	51795162	51795187	51795176	+	High_confidence	3	3	12	0.699499	3.251629	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.916667
omental_fat_pad_female_adult_51_years	chr6	108961028	108961029	108961028	+	High_confidence	12	12	12	0.699499	3.251629	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108961035	108974995	STRG.25740.1	+	108961035,108962013,108964179,108964979,108973356	108961694,108962127,108964312,108965140,108974995	1.000000
omental_fat_pad_female_adult_51_years	chr2	189571744	189571761	189571744	-	RAMPAGE_only	3	3	9	0.524624	3.000000	chr2	189571695	189571755	LINE|CR1|L3	+	chr2	189560578	189580741	STRG.10350.1	-	189560578,189563583,189565353,189571714,189572845,189575160,189578218,189579812,189580417	189562191,189564225,189565599,189571841,189572961,189575320,189578472,189579880,189580741	0.888889
omental_fat_pad_female_adult_51_years	chr5	140593654	140593655	140593654	-	RAMPAGE_only	9	9	9	0.524624	2.947703	chr5	140593229	140593744	LINE|L1|L1P1	-	chr5	140575047	140575556	STRG.22118.1	-	140575047	140575556	0.555556
omental_fat_pad_female_adult_51_years	chr8	133250622	133250623	133250622	-	High_confidence	7	7	10	0.582916	2.921928	chr8	133250581	133250664	SINE|MIR|MIRb	+	chr8	133241877	133250460	NDRG1|ENST00000522665.5	-	133241877,133244354,133246615,133247874,133248714,133250439	133242074,133244390,133246663,133247926,133248771,133250460	0.500000
omental_fat_pad_female_adult_51_years	chr12	15227307	15227308	15227307	-	RAMPAGE_only	10	11	12	0.699499	3.584963	chr12	15227116	15227490	LTR|ERVL-MaLR|MLT1B	-	chr12	15107781	15221477	RERG|NM_032918.2	-	15107781,15111343,15121062,15217428,15221194	15109517,15111417,15121119,15217603,15221477	0.583333
omental_fat_pad_female_adult_51_years	chr11	17352281	17352314	17352281	+	High_confidence	5	5	12	0.699499	3.022055	chr11	17352168	17352474	SINE|Alu|AluY	-	chr11	17351725	17377341	STRG.41203.4	+	17351725,17356650,17367008,17368866	17354320,17357001,17367347,17377341	1.000000
omental_fat_pad_female_adult_51_years	chr22	36239937	36239939	36239937	-	High_confidence	2	5	7	0.408041	2.521641	chr22	36239876	36239982	SINE|MIR|MIRb	+	chr22	36226208	36239954	APOL2|NM_145637.2	-	36226208,36231339,36233152,36233401,36239440,36239731	36228280,36231466,36233241,36233455,36239561,36239954	1.000000
omental_fat_pad_female_adult_51_years	chr11	78284500	78284512	78284500	-	RAMPAGE_only	5	7	13	0.757790	3.251629	chr11	78282780	78284899	LINE|L2|L2a	+	chr11	78215289	78341880	GAB2|NM_012296.3	-	78215289,78220318,78221676,78222104,78223411,78225107,78226464,78250156,78280600,78341759	78219415,78220444,78221779,78222195,78223676,78225202,78227051,78250400,78280901,78341880	0.846154
omental_fat_pad_female_adult_51_years	chr6	108841936	108841937	108841936	+	High_confidence	17	21	22	1.282414	4.297079	chr6	108841964	108842055	LTR|ERVL|LTR16D2	+	chr6	108841897	108842569	STRG.25729.1	+	108841897	108842569	0.500000
omental_fat_pad_female_adult_51_years	chr2	85376793	85376815	85376803	+	High_confidence	4	4	10	0.582916	2.947703	chr2	85376136	85377036	LINE|L1|L1MDa	-	chr2	85376881	85390995	ELMOD3|ENST00000496957.1	+	85376881,85377343,85389750,85390137,85390759	85376916,85377474,85389827,85390265,85390995	0.600000
omental_fat_pad_female_adult_51_years	chr10	67387225	67387242	67387241	-	RAMPAGE_only	7	7	17	0.990956	2.983459	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.882353
omental_fat_pad_female_adult_51_years	chr12	46266488	46266516	46266515	-	High_confidence	5	5	9	0.524624	2.947703	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.666667
omental_fat_pad_female_adult_51_years	chr8	102930138	102930183	102930162	+	High_confidence	36	36	142	8.277400	5.557481	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	103002430	STRG.33535.1	+	102930181,102937623,102941920,102977586,103000008	102930518,102937757,102942053,102978955,103002430	0.943662
omental_fat_pad_female_adult_51_years	chr7	128450717	128450759	128450742	+	RAMPAGE_only	9	9	41	2.389954	4.926428	chr7	128450695	128451001	SINE|Alu|AluSz	-	chr7	128455936	128469197	AC010655.2|ENST00000493710.1	+	128455936,128457200,128466562,128468844	128456023,128457299,128466685,128469197	0.560976
omental_fat_pad_female_adult_51_years	chr12	8681676	8681677	8681676	+	High_confidence	294	294	383	22.325664	6.913392	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.859008
omental_fat_pad_female_adult_51_years	chr13	40377921	40377924	40377921	-	High_confidence	5	5	14	0.816082	3.026987	chr13	40377863	40377935	SINE|MIR|MIRc	+	chr13	40289072	40377292	STRG.48101.3	-	40289072,40343956,40350108,40377050	40337410,40344205,40350302,40377292	0.857143
omental_fat_pad_female_adult_51_years	chr7	82215285	82215314	82215305	-	High_confidence	4	4	11	0.641207	2.721928	chr7	82214996	82215437	LTR|ERV1|LOR1b	+	chr7	81946616	82215070	STRG.29415.3	-	81946616,81959274,81959719,81961893,81962439,81964055,81964206,81965593,81967168,81967595,81968886,81969880,81970674,81971776,81974454,81982566,81984634,81991184,81994867,81997178,82005422,82005764,82007678,82012153,82013460,82014400,82032796,82038076,82060427,82064303,82066454,82084768,82117043,82136634,82170549,82213925	81950508,81959357,81959829,81962023,81962495,81964108,81964359,81965665,81967207,81967663,81968973,81969984,81970737,81971864,81974552,81982627,81984711,81991246,81994939,81997235,82005497,82005839,82007756,82012243,82013510,82014479,82032901,82038235,82060527,82064354,82066524,82084900,82117173,82136676,82170609,82215070	0.909091
omental_fat_pad_female_adult_51_years	chr5	32403148	32403149	32403148	-	RAMPAGE_only	4	4	7	0.408041	2.584963	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.857143
omental_fat_pad_female_adult_51_years	chr17	59619894	59619929	59619894	+	High_confidence	960	1093	3309	192.886740	5.108528	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.978241
omental_fat_pad_female_adult_51_years	chr10	102779843	102779855	102779854	+	RAMPAGE_only	10	10	22	1.282414	3.921928	chr10	102779736	102779930	LINE|L2|L2c	-	chr10	102776248	102816267	WBP1L|ENST00000369889.5	+	102776248,102797992,102809892,102812594	102776417,102798095,102810054,102816267	0.818182
omental_fat_pad_female_adult_51_years	chr13	52570267	52570280	52570267	+	RAMPAGE_only	5	5	16	0.932665	3.006239	chr13	52569964	52570306	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.687500
omental_fat_pad_female_adult_51_years	chr11	118700426	118700457	118700426	+	High_confidence	5	7	13	0.757790	3.180833	chr11	118700359	118700777	LTR|ERVL-MaLR|MLT1H	+	chr11	118700426	118708848	AP002954.1|ENST00000646572.1	+	118700426,118704607,118708381	118700643,118704838,118708848	0.769231
omental_fat_pad_female_adult_51_years	chr2	218290081	218290125	218290124	-	High_confidence	4	4	17	0.990956	3.734522	chr2	218290106	218290347	DNA|hAT-Charlie|MER103C	-	chr2	218277934	218290089	TMBIM1|ENST00000429501.5	-	218277934,218278514,218279037,218279288,218280025,218281939,218289965	218277974,218278565,218279091,218279353,218280126,218282181,218290089	0.882353
omental_fat_pad_female_adult_51_years	chr16	760819	760925	760924	+	High_confidence	183	205	602	35.091513	6.570845	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	0.981728
omental_fat_pad_female_adult_51_years	chr16	20736882	20736883	20736882	-	RAMPAGE_only	7	7	9	0.524624	2.500000	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	0.777778
omental_fat_pad_female_adult_51_years	chr16	2759957	2759996	2759957	+	High_confidence	5	5	19	1.107539	3.721612	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.578947
omental_fat_pad_female_adult_51_years	chr12	79873266	79873267	79873266	-	High_confidence	6	6	9	0.524624	2.500000	chr12	79873243	79873519	DNA|hAT-Charlie|Charlie1a	+	chr12	79828370	79872872	PPP1R12A|ENST00000548318.1	-	79828370,79832331,79845301,79848787,79872807	79828464,79832491,79845420,79848931,79872872	0.888889
omental_fat_pad_female_adult_51_years	chrX	151958581	151958582	151958581	-	RAMPAGE_only	11	11	11	0.641207	2.913977	chrX	151958580	151958655	DNA|DNA|MER135	-	chrX	151953124	151959723	GABRE|ENST00000486255.1	-	151953124,151955367,151955707	151955084,151955567,151959723	1.000000
omental_fat_pad_female_adult_51_years	chr7	55538659	55538664	55538663	-	High_confidence	4	4	8	0.466332	2.521641	chr7	55538614	55538881	LINE|L1|L1ME4b	+	chr7	55471967	55538660	VOPP1|ENST00000625836.2	-	55471967,55492281,55497612,55521071,55538612	55473045,55492418,55497690,55521130,55538660	0.750000
omental_fat_pad_female_adult_51_years	chr13	114004955	114004966	114004965	-	High_confidence	4	4	10	0.582916	2.641604	chr13	114004202	114005208	LINE|L1|L1PB4	+	chr13	113977782	114005027	STRG.49242.2	-	113977782,113981674,113992484,113996530,113999584,114000825,114004803	113979422,113981858,113992588,113996739,113999667,114000932,114005027	0.800000
omental_fat_pad_female_adult_51_years	chr6	2999185	2999186	2999185	-	High_confidence	22	23	23	1.340706	3.697846	chr6	2999098	2999242	LINE|L1|L1MD2	-	chr6	2989725	2999134	AL133351.1|ENST00000429319.1	-	2989725,2999012	2990011,2999134	0.739130
omental_fat_pad_female_adult_51_years	chr4	141220426	141220427	141220426	+	High_confidence	12	12	13	0.757790	3.084963	chr4	141220377	141220506	LINE|L2|L2	-	chr4	141220886	141234697	ZNF330|NM_014487.5	+	141220886,141222365,141224486,141224606,141226766,141229570,141230165,141231438,141232524,141233714	141221108,141222491,141224506,141224677,141226846,141229697,141230270,141231485,141232642,141234697	0.615385
omental_fat_pad_female_adult_51_years	chr7	11194708	11194724	11194708	+	High_confidence	92	101	154	8.976899	5.274728	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11194698	11379366	STRG.27633.2	+	11194698,11197309,11244257,11248292,11379286	11194784,11197444,11244479,11248375,11379366	0.740260
omental_fat_pad_female_adult_51_years	chr10	6737414	6737438	6737414	+	High_confidence	5	5	22	1.282414	3.913977	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.863636
omental_fat_pad_female_adult_51_years	chr5	77088090	77088109	77088108	+	High_confidence	6	7	13	0.757790	3.022055	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.538462
omental_fat_pad_female_adult_51_years	chr20	50267474	50267502	50267493	+	High_confidence	15	15	112	6.528654	4.925727	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267498	50278427	SMIM25|ENST00000445003.5	+	50267498,50277490,50278176	50267663,50277613,50278427	0.910714
omental_fat_pad_female_adult_51_years	chrX	103431536	103431579	103431536	+	High_confidence	56	56	154	8.976899	5.683306	chrX	103431274	103435037	LTR|ERV1|HERVH-int	-	chrX	103431547	103454692	STRG.68141.3	+	103431547,103450496	103431918,103454692	0.889610
omental_fat_pad_female_adult_51_years	chr9	92536601	92536704	92536601	-	High_confidence	52	57	203	11.833185	6.121163	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.960591
omental_fat_pad_female_adult_51_years	chr3	180870518	180870522	180870518	-	High_confidence	10	11	23	1.340706	3.725651	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180743482	180870509	STRG.16113.1	-	180743482,180751347,180781983,180847506,180870046	180748316,180751410,180782124,180847624,180870509	0.826087
omental_fat_pad_female_adult_51_years	chr7	106285426	106285437	106285426	-	High_confidence	10	10	19	1.107539	3.308271	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106277055	106285612	NAMPT|ENST00000417537.1	-	106277055,106284827,106285540	106277179,106284931,106285612	0.947368
omental_fat_pad_female_adult_51_years	chr6	82095287	82095312	82095311	-	RAMPAGE_only	5	5	15	0.874373	2.973557	chr6	82095126	82095506	LTR|ERVL-MaLR|THE1C	-	chr6	81845184	81933480	LINC02542|ENST00000418567.1	-	81845184,81928856,81933428	81845909,81928901,81933480	0.666667
omental_fat_pad_female_adult_51_years	chr9	33394026	33394067	33394066	-	High_confidence	10	11	25	1.457289	4.334963	chr9	33394009	33394115	LINE|L2|L2b	+	chr9	33385505	33394176	AQP7|ENST00000447660.3	-	33385505,33386076,33386403,33393796	33385866,33386195,33386541,33394176	0.960000
omental_fat_pad_female_adult_51_years	chr3	128626809	128626825	128626809	-	RAMPAGE_only	4	4	12	0.699499	2.625815	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	1.000000
omental_fat_pad_female_adult_51_years	chr15	41280580	41280741	41280604	+	RAMPAGE_only	14	15	54	3.147744	3.843498	chr15	41280505	41280810	SINE|Alu|AluSx3	-	chr15	41231238	41281887	CHP1|NM_007236.4	+	41231238,41243666,41256909,41262755,41270556,41278766,41279335	41231449,41243739,41256990,41262883,41270618,41278889,41281887	1.000000
omental_fat_pad_female_adult_51_years	chr12	68963264	68963273	68963264	-	RAMPAGE_only	7	9	18	1.049248	3.641604	chr12	68963127	68963528	LTR|ERV1|MER39B	+	chr12	68957376	68957677	PRELID2P1|ENST00000552837.1	-	68957376	68957677	0.500000
omental_fat_pad_female_adult_51_years	chr9	121313981	121314021	121314002	+	RAMPAGE_only	109	113	479	27.921653	5.433411	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.991649
omental_fat_pad_female_adult_51_years	chr14	95516099	95516123	95516122	+	High_confidence	5	9	19	1.107539	3.826875	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.842105
omental_fat_pad_female_adult_51_years	chr9	129489058	129489126	129489125	+	High_confidence	8	10	42	2.448245	4.855790	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.642857
omental_fat_pad_female_adult_51_years	chr10	89888961	89888962	89888961	+	RAMPAGE_only	5	5	7	0.408041	2.584963	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.571429
omental_fat_pad_female_adult_51_years	chr19	53874817	53874903	53874902	+	RAMPAGE_only	18	18	78	4.546741	4.779728	chr19	53874763	53874953	SINE|Alu|AluSx	-	chr19	53869405	53876435	MYADM|ENST00000391769.2	+	53869405,53869753,53873527	53869598,53869838,53876435	0.987179
omental_fat_pad_female_adult_51_years	chr6	31400605	31400618	31400605	-	High_confidence	4	6	14	0.816082	3.238901	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31394178	31400528	STRG.24035.1	-	31394178,31398058	31395217,31400528	0.857143
omental_fat_pad_female_adult_51_years	chr6	71291241	71291283	71291251	+	High_confidence	4	4	18	1.049248	3.337175	chr6	71290785	71291650	LINE|L2|L2	-	chr6	71291361	71293612	OGFRL1|ENST00000467503.1	+	71291361,71293292,71293532	71292020,71293379,71293612	0.722222
omental_fat_pad_female_adult_51_years	chr17	2975656	2975667	2975660	+	RAMPAGE_only	5	7	24	1.398997	4.262692	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2963695	3037698	STRG.56665.1	+	2963695,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037698	0.833333
omental_fat_pad_female_adult_51_years	chr11	65382639	65382642	65382639	-	High_confidence	3	3	9	0.524624	2.641604	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	1.000000
omental_fat_pad_female_adult_51_years	chr10	6779621	6779631	6779630	+	High_confidence	11	17	27	1.573872	4.356558	chr10	6779419	6779969	LTR|ERVL|MLT2A2	+	chr10	6779607	6877888	AL392086.2|ENST00000650205.1	+	6779607,6781303,6833642,6837973,6873799,6877275	6779887,6781486,6833688,6838008,6873873,6877888	0.518519
omental_fat_pad_female_adult_51_years	chr1	183590905	183590945	183590910	-	High_confidence	3	3	10	0.582916	2.721928	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.800000
omental_fat_pad_female_adult_51_years	chr9	127874880	127874881	127874880	-	High_confidence	8	8	8	0.466332	2.750000	chr9	127874829	127874913	SINE|MIR|MIR3	+	chr9	127867998	127875007	AK1|ENST00000373156.5	-	127867998,127868320,127871822,127872689,127873025,127874610,127874876	127868076,127868512,127871939,127872853,127873061,127874649,127875007	0.750000
omental_fat_pad_female_adult_51_years	chr6	36505070	36505091	36505070	-	RAMPAGE_only	16	16	51	2.972869	5.030173	chr6	36505057	36505226	DNA|hAT-Charlie|MER5B	+	chr6	36493891	36547453	STRG.24363.2	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540204,36547453	0.980392
omental_fat_pad_female_adult_51_years	chr15	30624476	30624496	30624476	+	High_confidence	3	3	7	0.408041	2.584963	chr15	30624495	30624669	LINE|CR1|L3	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.714286
omental_fat_pad_female_adult_51_years	chr1	46804473	46804478	46804477	+	RAMPAGE_only	6	6	16	0.932665	3.452820	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.687500
omental_fat_pad_female_adult_51_years	chr5	142621153	142621176	142621153	-	High_confidence	15	15	28	1.632163	4.155046	chr5	142620934	142621256	LINE|L2|L2c	+	chr5	142595242	142621232	STRG.22275.11	-	142595242,142600701,142613958,142620954	142595484,142600805,142614161,142621232	1.000000
omental_fat_pad_female_adult_51_years	chr16	75248150	75248151	75248150	-	High_confidence	8	9	9	0.524624	3.000000	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.777778
omental_fat_pad_female_adult_51_years	chr11	65434171	65434589	65434552	+	RAMPAGE_only	17	17	327	19.061337	6.524733	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
omental_fat_pad_female_adult_51_years	chr2	27714461	27714462	27714461	+	RAMPAGE_only	4	4	7	0.408041	2.521641	chr2	27714414	27714546	SINE|MIR|MIRb	-	chr2	27716455	27738407	STRG.6981.1	+	27716455,27716846,27727616,27738272	27716732,27717018,27727685,27738407	0.714286
omental_fat_pad_female_adult_51_years	chr4	158173024	158173025	158173024	-	High_confidence	84	93	107	6.237196	5.865412	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.906542
omental_fat_pad_female_adult_51_years	chr19	11223351	11223352	11223351	-	RAMPAGE_only	12	12	14	0.816082	3.521641	chr19	11223304	11223458	LTR|ERVL-MaLR|MLT1J2	+	chr19	11199496	11236497	DOCK6|ENST00000587656.5	-	11199496,11200307,11200715,11200908,11201888,11202393,11202583,11204080,11204199,11208685,11208910,11211775,11211992,11213175,11214274,11214552,11215386,11215800,11216913,11217230,11221850,11222108,11222734,11222992,11227336,11228939,11232184,11233202,11235597,11236345	11199539,11200469,11200822,11201052,11202125,11202483,11202709,11204095,11204331,11208829,11209103,11211876,11212151,11213328,11214409,11214649,11215471,11215927,11217096,11217391,11222020,11222248,11222905,11223106,11227477,11229035,11232289,11233366,11235759,11236497	0.928571
omental_fat_pad_female_adult_51_years	chr14	95526022	95526023	95526022	-	High_confidence	6	8	8	0.466332	2.500000	chr14	95525562	95526081	LINE|L2|L2b	+	chr14	95522036	95526035	STRG.51420.1	-	95522036,95522551,95525920	95522423,95522684,95526035	0.500000
omental_fat_pad_female_adult_51_years	chr7	82214035	82214042	82214041	-	RAMPAGE_only	36	53	72	4.196992	5.329185	chr7	82213847	82214213	LTR|ERVL-MaLR|MLT1A0	-	chr7	81946616	82215070	STRG.29415.3	-	81946616,81959274,81959719,81961893,81962439,81964055,81964206,81965593,81967168,81967595,81968886,81969880,81970674,81971776,81974454,81982566,81984634,81991184,81994867,81997178,82005422,82005764,82007678,82012153,82013460,82014400,82032796,82038076,82060427,82064303,82066454,82084768,82117043,82136634,82170549,82213925	81950508,81959357,81959829,81962023,81962495,81964108,81964359,81965665,81967207,81967663,81968973,81969984,81970737,81971864,81974552,81982627,81984711,81991246,81994939,81997235,82005497,82005839,82007756,82012243,82013510,82014479,82032901,82038235,82060527,82064354,82066524,82084900,82117173,82136676,82170609,82215070	0.819444
omental_fat_pad_female_adult_51_years	chr8	102929818	102929831	102929828	+	High_confidence	30	31	68	3.963825	5.450930	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	103002430	STRG.33535.1	+	102930181,102937623,102941920,102977586,103000008	102930518,102937757,102942053,102978955,103002430	0.720588
omental_fat_pad_female_adult_51_years	chr12	50473533	50473534	50473533	+	RAMPAGE_only	8	8	8	0.466332	2.750000	chr12	50473583	50473802	SINE|Alu|AluSx	+	chr12	50440478	50477497	STRG.45719.6	+	50440478,50441589,50453459,50461134,50462581,50466958,50473414,50473998,50475525	50440549,50441643,50454417,50461347,50462630,50467120,50473536,50474167,50477497	1.000000
omental_fat_pad_female_adult_51_years	chr9	39810033	39810075	39810033	-	High_confidence	47	47	123	7.169861	5.538895	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803604	39810013	STRG.35265.2	-	39803604,39809485,39809730	39803859,39809615,39810013	0.894309
omental_fat_pad_female_adult_51_years	chr16	20676161	20676162	20676161	-	High_confidence	8	8	12	0.699499	3.418296	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	1.000000
omental_fat_pad_female_adult_51_years	chr1	29166016	29166019	29166018	-	RAMPAGE_only	3	5	8	0.466332	2.521641	chr1	29165912	29166153	SINE|tRNA-RTE|MamSINE1	-	chr1	29147852	29173494	SRSF4|ENST00000634348.1	-	29147852,29150102,29154695,29159373,29165889,29166728,29168502	29149226,29150192,29154910,29160517,29166064,29166866,29173494	0.750000
omental_fat_pad_female_adult_51_years	chr9	73160276	73160373	73160372	+	High_confidence	23	23	248	14.456305	5.776952	chr9	73160421	73160511	SINE|MIR|MIR	+	chr9	73160284	73165544	ANXA1|ENST00000489109.1	+	73160284,73160802,73162781,73163475,73165115	73160376,73160893,73162861,73163532,73165544	0.806452
omental_fat_pad_female_adult_51_years	chr9	696336	696343	696342	+	RAMPAGE_only	4	5	10	0.582916	2.921928	chr9	696299	696580	LINE|L2|L2c	-	chr9	691454	746103	STRG.34352.9	+	691454,710803,730050,731157,732377,734747,738284,740791,742204,744490	693786,713464,730248,731266,732617,734835,738504,740934,742405,746103	0.800000
omental_fat_pad_female_adult_51_years	chrX	147937598	147937599	147937598	+	RAMPAGE_only	9	9	12	0.699499	2.522055	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.833333
omental_fat_pad_female_adult_51_years	chr11	117836274	117836305	117836274	+	High_confidence	11	12	43	2.506537	4.868508	chr11	117836254	117836523	SINE|Alu|AluJb	-	chr11	117836279	117838986	STRG.43721.1	+	117836279,117837167	117836502,117838986	0.953488
omental_fat_pad_female_adult_51_years	chr10	133369997	133370017	133369997	-	RAMPAGE_only	4	4	14	0.816082	3.238901	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.928571
omental_fat_pad_female_adult_51_years	chr1	86703088	86703134	86703088	+	RAMPAGE_only	4	6	17	0.990956	3.499228	chr1	86702882	86703173	SINE|Alu|AluSz	+	chr1	86704569	86748184	SH3GLB1|NM_016009.4	+	86704569,86715723,86719506,86722539,86724312,86734601,86735078,86742207,86743127	86704971,86715865,86719635,86722673,86724405,86734691,86735179,86742436,86748184	0.764706
omental_fat_pad_female_adult_51_years	chr2	73982163	73982164	73982163	-	High_confidence	7	7	11	0.641207	3.121928	chr2	73982060	73982404	LINE|L2|L2c	-	chr2	73957966	73981439	DGUOK-AS1|NR_104030.1	-	73957966,73981134	73958207,73981439	0.636364
omental_fat_pad_female_adult_51_years	chr2	159428321	159428357	159428356	-	RAMPAGE_only	7	7	23	1.340706	3.105672	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.782609
omental_fat_pad_female_adult_51_years	chr3	14047205	14047206	14047205	-	High_confidence	9	10	11	0.641207	2.732159	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14041390	14047129	STRG.12339.1	-	14041390,14046812	14041628,14047129	0.818182
omental_fat_pad_female_adult_51_years	chr3	179681658	179681666	179681663	+	RAMPAGE_only	5	5	18	1.049248	3.969816	chr3	179681222	179681750	LTR|ERV1|LTR6A	-	chr3	179653692	179784406	USP13|ENST00000496897.5	+	179653692,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653750,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179784406	0.944444
omental_fat_pad_female_adult_51_years	chr12	79542060	79542105	79542060	-	RAMPAGE_only	3	3	16	0.932665	3.875000	chr12	79540300	79543266	LTR|ERV1|HERVH-int	+	chr12	79392251	79500214	STRG.46537.3	-	79392251,79490858	79393925,79500214	0.750000
omental_fat_pad_female_adult_51_years	chr1	244600164	244600179	244600164	+	High_confidence	17	19	55	3.206035	4.009724	chr1	244600118	244600216	LINE|L1|L1MEd	+	chr1	244600181	244600620	STRG.6069.1	+	244600181	244600620	0.909091
omental_fat_pad_female_adult_51_years	chr12	56157286	56157341	56157286	+	High_confidence	19	19	65	3.788951	4.559390	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.969231
omental_fat_pad_female_adult_51_years	chr15	40765558	40765593	40765592	+	High_confidence	3	3	8	0.466332	2.750000	chr15	40765434	40765599	SINE|Alu|FRAM	-	chr15	40765619	40767708	GCHFR|ENST00000558467.1	+	40765619,40767225	40765921,40767708	1.000000
omental_fat_pad_female_adult_51_years	chr3	28347646	28347654	28347653	-	High_confidence	35	36	68	3.963825	5.383429	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.838235
omental_fat_pad_female_adult_51_years	chr6	79631238	79631329	79631328	+	High_confidence	31	34	90	5.246240	5.659123	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.944444
omental_fat_pad_female_adult_51_years	chr4	69525984	69526011	69525984	-	High_confidence	4	4	20	1.165831	3.221097	chr4	69525819	69526138	SINE|Alu|AluY	+	chr4	69480164	69526014	UGT2B4|NM_001297616.1	-	69480164,69485207,69486608,69489438,69493692,69495140,69525686	69480910,69485427,69486696,69489570,69493841,69495410,69526014	0.950000
omental_fat_pad_female_adult_51_years	chr3	108165465	108165474	108165465	-	RAMPAGE_only	3	3	7	0.408041	2.807355	chr3	108165378	108165542	DNA|hAT-Ac|OldhAT1	+	chr3	108160811	108222570	IFT57|NM_018010.3	-	108160811,108163662,108165430,108166853,108167792,108191520,108206627,108213930,108218534,108219409,108222110	108162655,108163729,108165493,108166985,108167864,108191643,108206696,108214021,108218653,108219572,108222570	1.000000
omental_fat_pad_female_adult_51_years	chr5	151157945	151157996	151157995	-	High_confidence	5	5	26	1.515580	4.517559	chr5	151157893	151158048	SINE|MIR|MIR3	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	1.000000
omental_fat_pad_female_adult_51_years	chr15	45645892	45645896	45645892	+	High_confidence	2	2	7	0.408041	2.584963	chr15	45645871	45646155	DNA|hAT-Tip100|Arthur1C	+	chr15	45645880	45669946	SQOR|ENST00000561493.5	+	45645880,45658906,45661954,45669927	45646008,45659157,45662125,45669946	0.714286
omental_fat_pad_female_adult_51_years	chr3	14047155	14047156	14047155	-	High_confidence	9	9	10	0.582916	2.641604	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14041390	14047129	STRG.12339.1	-	14041390,14046812	14041628,14047129	0.600000
omental_fat_pad_female_adult_51_years	chr17	82081601	82081706	82081606	-	High_confidence	19	19	83	4.838199	4.656352	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.506024
omental_fat_pad_female_adult_51_years	chr5	172954054	172954067	172954054	+	RAMPAGE_only	16	16	35	2.040204	4.364858	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172952785	172969716	STRG.22854.16	+	172952785,172959864,172968458,172969412	172954336,172960041,172968599,172969716	0.914286
omental_fat_pad_female_adult_51_years	chr5	109383422	109383451	109383450	-	High_confidence	3	4	13	0.757790	3.180833	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
omental_fat_pad_female_adult_51_years	chr2	200862622	200862632	200862622	-	RAMPAGE_only	5	5	9	0.524624	2.500000	chr2	200862213	200862677	LTR|ERV1|LTR7B	+	chr2	200861089	200864252	CLK1|ENST00000481641.1	-	200861089,200861701,200864100	200861466,200861862,200864252	0.888889
omental_fat_pad_female_adult_51_years	chr16	4239748	4239771	4239748	-	High_confidence	17	17	26	1.515580	3.950064	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.923077
omental_fat_pad_female_adult_51_years	chr22	22336752	22336753	22336752	+	RAMPAGE_only	6	7	7	0.408041	2.521641	chr22	22331689	22336920	LINE|L1|L1PA8	+	chr22	22664439	22895825	STRG.65539.1	+	22664439,22758903,22893776,22895374	22664518,22759206,22893818,22895825	1.000000
omental_fat_pad_female_adult_51_years	chr1	160951451	160951493	160951451	-	High_confidence	19	21	88	5.129656	5.683697	chr1	160951407	160951550	LTR|ERVL|LTR40b	+	chr1	160950552	160951474	ITLN2|ENST00000490489.1	-	160950552,160951042	160950711,160951474	0.795455
omental_fat_pad_female_adult_51_years	chr3	38078549	38078592	38078565	+	RAMPAGE_only	6	8	23	1.340706	3.788755	chr3	38078462	38078610	LTR|ERV1|HERVH-int	-	chr3	38039204	38097798	DLEC1|ENST00000440294.6	+	38039204,38045542,38059741,38062168,38062580,38063840,38084157,38085273,38086240,38088295,38092789,38093604,38094878,38096568,38097181,38097506,38097743	38039636,38045693,38059852,38062368,38062801,38063919,38084245,38085447,38086377,38088388,38092880,38093767,38095946,38096737,38097275,38097637,38097798	0.956522
omental_fat_pad_female_adult_51_years	chr8	143018394	143018447	143018394	-	High_confidence	8	11	76	4.430158	5.465946	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.578947
omental_fat_pad_female_adult_51_years	chr2	229586860	229586906	229586868	-	High_confidence	7	7	34	1.981913	4.718488	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229357655	229586931	STRG.11517.1	-	229357655,229366872,229388264,229407231,229418107,229447315,229477139,229512782,229546946,229585857,229586693	229358651,229367119,229388396,229407345,229418230,229447540,229477253,229512936,229547092,229586024,229586931	0.794118
omental_fat_pad_female_adult_51_years	chr11	119314504	119314531	119314504	-	RAMPAGE_only	2	2	10	0.582916	2.503258	chr11	119314166	119314455	SINE|Alu|AluJr	-	chr11	119308528	119317116	MCAM|ENST00000264036.5	-	119308528,119310348,119310755,119311089,119311279,119311529,119311807,119312051,119312265,119312526,119312769,119314488,119314678,119314832,119315138,119317034	119309915,119310466,119310903,119311185,119311421,119311651,119311949,119312170,119312428,119312648,119312949,119314576,119314749,119315040,119315263,119317116	0.900000
omental_fat_pad_female_adult_51_years	chr6	110330079	110330111	110330110	-	RAMPAGE_only	3	3	9	0.524624	2.500000	chr6	110329832	110331376	LINE|L1|L1MD2	+	chr6	110245927	110358272	METTL24|ENST00000338882.4	-	110245927,110298921,110315341,110322773,110357954	110246260,110299150,110315481,110322872,110358272	0.888889
omental_fat_pad_female_adult_51_years	chr11	120815816	120815839	120815816	-	RAMPAGE_only	2	2	9	0.524624	2.750000	chr11	120815766	120815947	DNA|hAT-Charlie|Charlie15a	+	chr11	120811344	120819115	LOC105369532|NR_133008.1	-	120811344,120815331,120818960	120811478,120815459,120819115	0.666667
omental_fat_pad_female_adult_51_years	chr3	156528699	156528700	156528699	+	RAMPAGE_only	8	8	10	0.582916	2.921928	chr3	156528374	156528825	LINE|L2|L2c	-	chr3	156457209	156537241	KCNAB1|ENST00000497291.5	+	156457209,156457452,156459826,156463701,156465642,156474733,156514363,156515099,156516269,156523826,156531408,156536657	156457358,156457532,156459871,156463746,156465686,156474820,156514449,156515220,156516364,156523947,156531497,156537241	1.000000
omental_fat_pad_female_adult_51_years	chr10	86974721	86974724	86974721	-	High_confidence	3	4	8	0.466332	2.807355	chr10	86974596	86974877	LINE|L1|L1M7	-	chr10	86973497	86973934	STRG.39453.1	-	86973497	86973934	0.625000
omental_fat_pad_female_adult_51_years	chr8	2119275	2119300	2119299	+	High_confidence	3	4	8	0.466332	3.000000	chr8	2119298	2119410	LINE|L2|L2c	-	chr8	2119257	2140826	MYOM2|ENST00000519631.5	+	2119257,2123251,2123554,2124178,2129126,2140722	2119451,2123365,2123642,2124217,2129232,2140826	0.750000
omental_fat_pad_female_adult_51_years	chr5	180830991	180831032	180831031	+	High_confidence	5	5	34	1.981913	4.226410	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831026	180834779	LINC00847|ENST00000508309.1	+	180831026,180834311	180831229,180834779	0.882353
omental_fat_pad_female_adult_51_years	chr17	47067498	47067518	47067498	-	High_confidence	197	224	793	46.225199	5.922289	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.948298
omental_fat_pad_female_adult_51_years	chr13	22040971	22040975	22040971	+	High_confidence	6	6	10	0.582916	3.121928	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.500000
omental_fat_pad_female_adult_51_years	chr16	761049	761120	761114	+	High_confidence	552	606	2455	143.105756	5.844471	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.980855
omental_fat_pad_female_adult_51_years	chr11	123061207	123061328	123061256	-	High_confidence	108	110	376	21.917623	5.899045	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.896277
omental_fat_pad_female_adult_51_years	chr6	118651542	118651593	118651592	-	High_confidence	23	23	92	5.362823	5.262548	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.978261
omental_fat_pad_female_adult_51_years	chr8	27977120	27977126	27977125	-	RAMPAGE_only	40	46	59	3.439201	4.642113	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.847458
omental_fat_pad_female_adult_51_years	chr1	242001524	242001589	242001562	-	High_confidence	36	36	184	10.725645	5.379632	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	242001591	STRG.6035.1	-	241995489,241998513,241998775,241998950,242001308	241996385,241998620,241998831,241999026,242001591	0.972826
omental_fat_pad_female_adult_51_years	chr11	65440504	65440844	65440658	+	RAMPAGE_only	31	31	357	20.810084	6.109020	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.994398
omental_fat_pad_female_adult_51_years	chr3	194486608	194486632	194486608	-	High_confidence	3	3	12	0.699499	3.022055	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.833333
omental_fat_pad_female_adult_51_years	chr2	240022172	240022211	240022172	-	RAMPAGE_only	3	3	16	0.932665	3.077820	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
omental_fat_pad_female_adult_51_years	chr2	201116008	201116034	201116008	+	High_confidence	3	3	14	0.816082	2.985228	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.928571
omental_fat_pad_female_adult_51_years	chr18	9117549	9117565	9117564	+	High_confidence	3	3	10	0.582916	2.725481	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9117525	9119566	NDUFV2|ENST00000483511.1	+	9117525,9117837,9119325,9119473	9117638,9117903,9119388,9119566	0.500000
omental_fat_pad_female_adult_51_years	chr2	143070964	143070965	143070964	+	RAMPAGE_only	10	10	10	0.582916	2.921928	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143091361	143238352	ARHGAP15|ENST00000409869.5	+	143091361,143092156,143155476,143202133,143216383,143228580,143235945	143091422,143092258,143155655,143202202,143216445,143228668,143238352	0.800000
omental_fat_pad_female_adult_51_years	chr1	174874426	174874454	174874426	+	High_confidence	4	5	19	1.107539	3.530493	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874457	174958182	RABGAP1L|ENST00000478442.5	+	174874457,174877391,174957456,174957890	174874506,174877605,174957549,174958182	0.842105
omental_fat_pad_female_adult_51_years	chr10	67387426	67387465	67387426	-	RAMPAGE_only	3	3	12	0.699499	3.459432	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.666667
omental_fat_pad_female_adult_51_years	chr11	119046636	119046676	119046636	-	RAMPAGE_only	2	2	13	0.757790	2.522055	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.923077
omental_fat_pad_female_adult_51_years	chr6	77369117	77369167	77369166	-	High_confidence	12	22	76	4.430158	5.102933	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77249475	77369158	STRG.25181.1	-	77249475,77271339,77350621,77368885	77250043,77271493,77350734,77369158	0.513158
omental_fat_pad_female_adult_51_years	chr2	45192665	45192666	45192665	-	High_confidence	22	26	29	1.690455	4.280226	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45187169	45192285	LINC01121|ENST00000454673.1	-	45187169,45192139	45189249,45192285	0.620690
omental_fat_pad_female_adult_51_years	chr5	115956529	115956676	115956675	+	High_confidence	247	257	1779	103.700668	7.178043	chr5	115956262	115957250	LINE|L2|L2b	-	chr5	115956543	115958876	STRG.21423.11	+	115956543,115958428	115956920,115958876	0.771782
omental_fat_pad_female_adult_51_years	chr11	65437479	65437585	65437584	+	RAMPAGE_only	9	9	76	4.430158	4.423536	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.973684
omental_fat_pad_female_adult_51_years	chr17	40552958	40552964	40552963	+	High_confidence	5	5	11	0.641207	2.913977	chr17	40552782	40553192	LTR|ERVL-MaLR|MLT1A1	+	chr17	40552975	40559760	STRG.57811.1	+	40552975	40559760	0.909091
omental_fat_pad_female_adult_51_years	chr7	80524846	80524860	80524846	+	RAMPAGE_only	9	13	35	2.040204	4.457575	chr7	80524761	80524908	LTR|ERV1|LTR38B	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.857143
omental_fat_pad_female_adult_51_years	chr19	5680240	5680249	5680240	-	High_confidence	4	4	9	0.524624	2.750000	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.888889
omental_fat_pad_female_adult_51_years	chrX	15252497	15252529	15252528	-	RAMPAGE_only	12	16	30	1.748747	4.280395	chrX	15252471	15252590	SINE|MIR|MIRb	+	chrX	15244289	15270013	ASB9|ENST00000473862.5	-	15244289,15248743,15250429,15252253,15254736,15258865,15269780	15244630,15248935,15250564,15252317,15254844,15258945,15270013	0.766667
omental_fat_pad_female_adult_51_years	chr3	39154563	39154566	39154565	-	High_confidence	15	24	30	1.748747	2.880424	chr3	39154504	39154649	LINE|L2|L2c	+	chr3	39142337	39154562	CSRNP1|ENST00000514182.1	-	39142337,39144136,39144996,39146477,39154496	39144044,39144451,39145256,39146722,39154562	1.000000
omental_fat_pad_female_adult_51_years	chrX	73837439	73837504	73837439	-	RAMPAGE_only	7	7	26	1.515580	3.238901	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
omental_fat_pad_female_adult_51_years	chr16	8644368	8644388	8644368	+	High_confidence	2	2	9	0.524624	2.750000	chr16	8644288	8644447	SINE|MIR|MIRb	+	chr16	8644436	8646222	METTL22|ENST00000569597.1	+	8644436,8646107	8644725,8646222	0.666667
omental_fat_pad_female_adult_51_years	chr6	136225617	136225620	136225619	-	High_confidence	3	5	7	0.408041	2.521641	chr6	136225478	136225763	LTR|ERVL-MaLR|THE1B	-	chr6	136220780	136225845	STRG.26415.1	-	136220780,136225537	136221333,136225845	0.571429
omental_fat_pad_female_adult_51_years	chr1	204870075	204870100	204870094	+	High_confidence	8	8	34	1.981913	4.418201	chr1	204870144	204870213	LINE|CR1|Plat_L3	+	chr1	204870830	205018371	NFASC|ENST00000404076.5	+	204870830,204920631,204944225,204952010,204954187,204954828,204957655,204968248,204968797,204970615,204973275,204974178,204974656,204975270,204976670,204978967,204979361,204980369,204981797,204984026,204985909,204987417,204988632,204991291,205009556,205012796,205016307	204871053,204920740,204944406,204952116,204954384,204954951,204957826,204968360,204968982,204970747,204973419,204974290,204974823,204975418,204976795,204979069,204979559,204980440,204982020,204984142,204986114,204987540,204988806,204991306,205009688,205012866,205018371	0.941176
omental_fat_pad_female_adult_51_years	chr1	19980362	19980363	19980362	-	High_confidence	14	20	20	1.165831	3.642150	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	0.950000
omental_fat_pad_female_adult_51_years	chr7	32966917	32966952	32966951	+	RAMPAGE_only	4	4	16	0.932665	2.923231	chr7	32966974	32967230	LTR|ERVL|LTR33	+	chr7	32974594	32976405	FKBP9|ENST00000485309.1	+	32974594,32976353	32975371,32976405	0.875000
omental_fat_pad_female_adult_51_years	chr7	107069861	107069862	107069861	+	RAMPAGE_only	7	7	10	0.582916	3.169925	chr7	107069817	107070165	LINE|L1|L1ME4c	-	chr7	107091675	107146462	PRKAR2B|ENST00000488792.1	+	107091675,107121951,107128211,107140846,107146307	107091885,107122004,107128295,107140953,107146462	0.600000
omental_fat_pad_female_adult_51_years	chr18	7946867	7946888	7946878	+	High_confidence	5	5	22	1.282414	3.936260	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.954545
omental_fat_pad_female_adult_51_years	chr4	122700489	122700493	122700489	+	High_confidence	8	8	13	0.757790	2.688722	chr4	122700197	122700669	LTR|ERVL|MER70A	+	chr4	122700451	122744943	STRG.18772.1	+	122700451,122732644,122741882	122706699,122732884,122744943	0.923077
omental_fat_pad_female_adult_51_years	chr14	91883349	91883350	91883349	-	RAMPAGE_only	8	9	9	0.524624	2.500000	chr14	91883123	91883337	LINE|CR1|L3	-	chr14	91870042	91947074	FBLN5|ENST00000556154.5	-	91870042,91877486,91881291,91882953,91887192,91891220,91894949,91936946,91940564,91942906,91946710	91870385,91877682,91881418,91883076,91887312,91891337,91895072,91937201,91940616,91942961,91947074	0.666667
omental_fat_pad_female_adult_51_years	chr15	34588448	34588451	34588450	-	High_confidence	9	15	19	1.107539	3.787144	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.789474
omental_fat_pad_female_adult_51_years	chr9	130877417	130877429	130877417	+	RAMPAGE_only	4	4	8	0.466332	2.807355	chr9	130877359	130877516	SINE|MIR|MIR3	-	chr9	130835345	130895404	STRG.37307.1	+	130835345,130854063,130854800,130862762,130872128,130872859,130874867,130878414,130880067,130880499,130883968,130892329	130835525,130854237,130855096,130863035,130872213,130873037,130875052,130878567,130880157,130880664,130887414,130895404	0.625000
omental_fat_pad_female_adult_51_years	chr6	136584527	136584538	136584527	-	High_confidence	9	9	21	1.224123	3.546439	chr6	136584318	136584690	LTR|ERVL-MaLR|THE1B	-	chr6	136580333	136584507	MAP3K5|ENST00000463140.1	-	136580333,136583554,136584401	136580406,136583740,136584507	0.904762
omental_fat_pad_female_adult_51_years	chr15	93863036	93863076	93863065	+	High_confidence	15	15	54	3.147744	5.298583	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863044	93867715	STRG.54044.1	+	93863044,93865373,93867399	93863216,93865648,93867715	0.740741
omental_fat_pad_female_adult_51_years	chr2	29114158	29114219	29114158	+	High_confidence	10	10	51	2.972869	4.686641	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.843137
omental_fat_pad_female_adult_51_years	chr14	102235458	102235481	102235458	-	High_confidence	13	13	42	2.448245	4.354639	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102229213	102235461	STRG.51634.9	-	102229213,102229456,102231706,102232534,102233687,102235364	102229366,102229657,102231821,102232708,102233789,102235461	0.904762
omental_fat_pad_female_adult_51_years	chr3	11604455	11604460	11604455	-	High_confidence	8	8	13	0.757790	3.026987	chr3	11604225	11604413	SINE|MIR|MIR3	-	chr3	11556066	11604581	VGLL4|NM_001284391.1	-	11556066,11559331,11564796,11601832,11604323	11558827,11559455,11565019,11602022,11604581	0.923077
omental_fat_pad_female_adult_51_years	chr8	104418913	104418931	104418930	-	High_confidence	2	3	6	0.349749	2.584963	chr8	104418737	104418980	LINE|L2|L2c	+	chr8	104330323	104418912	DPYS|ENST00000521601.1	-	104330323,104331605,104331942,104381183,104418715	104330437,104331730,104331964,104381314,104418912	0.666667
omental_fat_pad_female_adult_51_years	chr11	117811482	117811508	117811482	-	RAMPAGE_only	16	17	72	4.196992	4.556341	chr11	117810272	117812670	LTR|ERV1|HERVH-int	+	chr11	117776808	117817525	DSCAML1|ENST00000525836.1	-	117776808,117780492,117817389	117776937,117780810,117817525	0.847222
omental_fat_pad_female_adult_51_years	chr21	45370912	45370922	45370912	+	High_confidence	5	5	9	0.524624	2.641604	chr21	45370573	45371212	LTR|ERVL-MaLR|MLT1E2	+	chr21	45370632	45372488	STRG.65203.1	+	45370632,45371858	45371243,45372488	0.777778
omental_fat_pad_female_adult_51_years	chr1	179118734	179118751	179118734	-	High_confidence	3	3	6	0.349749	2.584963	chr1	179118593	179118709	LINE|RTE-BovB|MamRTE1	-	chr1	179107717	179118198	STRG.4693.16	-	179107717,179110281,179112308,179114877,179117331	179109441,179110845,179112398,179115030,179118198	0.500000
omental_fat_pad_female_adult_51_years	chr2	69848490	69848491	69848490	+	RAMPAGE_only	10	10	12	0.699499	3.418296	chr2	69848424	69848656	SINE|Alu|AluJr	+	chr2	69829641	69881396	GMCL1|ENST00000282570.3	+	69829641,69837546,69839456,69840941,69843148,69844130,69847542,69849651,69854822,69861277,69864899,69869718,69871744,69878908	69830152,69837670,69839553,69841039,69843261,69844196,69847627,69849742,69854960,69861347,69864975,69869864,69871832,69881396	0.833333
omental_fat_pad_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	122	122	123	7.169861	3.849240	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.967480
omental_fat_pad_female_adult_51_years	chr11	123071407	123071552	123071411	-	RAMPAGE_only	13	15	95	5.537697	4.174466	chr11	123071151	123071444	SINE|Alu|AluSx	+	chr11	123069864	123195281	CLMP|ENST00000448775.3	-	123069864,123074701,123083084,123083679,123084511,123097794,123194912	123073774,123074843,123083207,123083847,123084713,123097952,123195281	1.000000
omental_fat_pad_female_adult_51_years	chr2	232551066	232551106	232551105	+	High_confidence	5	5	26	1.515580	3.943465	chr2	232551133	232551224	SINE|MIR|MIRb	+	chr2	232550806	232567205	EIF4E2|ENST00000454501.1	+	232550806,232556415,232557883,232564246,232566828,232567077	232551218,232556530,232558018,232564351,232566981,232567205	0.923077
omental_fat_pad_female_adult_51_years	chr20	44738969	44738993	44738989	-	RAMPAGE_only	3	4	13	0.757790	3.584963	chr20	44738735	44739078	LTR|ERVL-MaLR|MLT1J2	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.538462
omental_fat_pad_female_adult_51_years	chr7	130872566	130872585	130872579	-	RAMPAGE_only	3	3	8	0.466332	2.521641	chr7	130872323	130872950	LTR|ERVL-MaLR|MLT1F2	-	chr7	130871991	130913176	STRG.30679.19	-	130871991,130884316,130912109	130881429,130884396,130913176	0.750000
omental_fat_pad_female_adult_51_years	chr13	47991638	47991650	47991649	-	RAMPAGE_only	19	21	50	2.914578	4.996115	chr13	47990978	47991673	LINE|L2|L2a	+	chr13	47942780	48001020	SUCLA2|ENST00000642944.1	-	47942780,47948939,47949482,47954139,47954395,47968594,47973263,47988540,47988881,47996842,48000906	47943445,47949028,47949603,47954282,47954557,47968733,47973392,47988703,47988981,47997023,48001020	0.920000
omental_fat_pad_female_adult_51_years	chr11	117817474	117817490	117817485	-	High_confidence	3	3	12	0.699499	3.095795	chr11	117817399	117817493	DNA|hAT-Charlie|MER5B	+	chr11	117776808	117817525	DSCAML1|ENST00000525836.1	-	117776808,117780492,117817389	117776937,117780810,117817525	0.750000
omental_fat_pad_female_adult_51_years	chr12	109134881	109134890	109134889	+	RAMPAGE_only	7	7	21	1.224123	3.689704	chr12	109134719	109134937	DNA|hAT-Charlie|MER20	+	chr12	109131357	109139910	ACACB|ENST00000539864.1	+	109131357,109139396	109131426,109139910	0.952381
omental_fat_pad_female_adult_51_years	chr4	152412497	152412529	152412497	-	High_confidence	5	5	16	0.932665	3.327820	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
omental_fat_pad_female_adult_51_years	chr17	59892716	59892741	59892716	-	High_confidence	3	3	9	0.524624	2.750000	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.666667
omental_fat_pad_female_adult_51_years	chr1	238486024	238486037	238486028	-	High_confidence	8	13	39	2.273370	4.463247	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480440	238486023	LINC01139|ENST00000649681.1	-	238480440	238486023	0.948718
omental_fat_pad_female_adult_51_years	chr2	70257706	70257707	70257706	+	High_confidence	9	9	9	0.524624	2.725481	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	1.000000
omental_fat_pad_female_adult_51_years	chr4	128570452	128570488	128570452	-	High_confidence	3	3	18	1.049248	3.852169	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.888889
omental_fat_pad_female_adult_51_years	chr6	127330831	127330854	127330831	-	High_confidence	2	2	11	0.641207	3.121928	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.818182
omental_fat_pad_female_adult_51_years	chr14	68882879	68882912	68882879	-	High_confidence	4	4	17	0.990956	3.572469	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.882353
omental_fat_pad_female_adult_51_years	chr10	71424955	71424994	71424993	+	RAMPAGE_only	3	5	13	0.757790	2.931209	chr10	71424985	71425079	SINE|MIR|MIR	-	chr10	71439831	71717907	CDH23|ENST00000442677.4	+	71439831,71446317,71510081,71510953,71511119,71566741,71570789,71577913,71615503,71617204,71643860,71645830,71646458,71675111,71677455,71679386,71682444,71687646,71690467,71694146,71695417,71702021,71702548,71704910,71706896,71709097,71712664,71713051	71439898,71446395,71510224,71511001,71511212,71566936,71570918,71577992,71615616,71617393,71643866,71645980,71646617,71675176,71677693,71679492,71682572,71687719,71690584,71694259,71695525,71702211,71702694,71705130,71707049,71709211,71712813,71717907	1.000000
omental_fat_pad_female_adult_51_years	chr7	148497154	148497168	148497154	-	RAMPAGE_only	11	13	25	1.457289	3.970176	chr7	148497121	148497554	LTR|ERVL-MaLR|MSTB1	+	chr7	148441698	148477479	STRG.30999.1	-	148441698,148477362	148442522,148477479	0.520000
omental_fat_pad_female_adult_51_years	chr10	67387511	67387538	67387537	-	RAMPAGE_only	3	4	14	0.816082	3.238901	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.642857
omental_fat_pad_female_adult_51_years	chr4	102431237	102431248	102431237	-	High_confidence	25	26	92	5.362823	5.399071	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.804348
omental_fat_pad_female_adult_51_years	chr14	100906104	100906136	100906104	+	High_confidence	2	2	10	0.582916	2.725481	chr14	100905713	100906123	LINE|L1|L1MC5	-	chr14	100907042	100935999	MEG8|ENST00000556475.1	+	100907042,100910232,100913431,100935771	100907132,100910304,100913521,100935999	0.500000
omental_fat_pad_female_adult_51_years	chr11	77175226	77175303	77175302	+	High_confidence	22	22	101	5.887447	5.144760	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175274	77203286	STRG.42624.3	+	77175274,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353,77197480,77198494,77199648,77201447,77202299,77203059	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194524,77197598,77198621,77199818,77201638,77202424,77203286	0.970297
omental_fat_pad_female_adult_51_years	chr5	133089677	133089693	133089677	+	RAMPAGE_only	12	12	19	1.107539	4.058814	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.894737
omental_fat_pad_female_adult_51_years	chr14	100831344	100831361	100831344	+	RAMPAGE_only	3	3	7	0.408041	2.521641	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100826132	100833328	MEG3|ENST00000452120.6	+	100826132,100828707,100829033	100826217,100828816,100833328	0.857143
omental_fat_pad_female_adult_51_years	chr16	56992022	56992023	56992022	+	RAMPAGE_only	31	33	41	2.389954	4.433789	chr16	56991822	56992273	LTR|ERVL-MaLR|MLT1C	+	chr16	56989562	56992444	NLRC5|ENST00000543141.5	+	56989562,56991914	56989595,56992444	0.926829
omental_fat_pad_female_adult_51_years	chr8	11795578	11795579	11795578	+	High_confidence	27	27	29	1.690455	3.750465	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.896552
omental_fat_pad_female_adult_51_years	chr16	8842153	8842215	8842153	+	High_confidence	9	9	32	1.865330	3.852217	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.968750
omental_fat_pad_female_adult_51_years	chr12	104864927	104865000	104864978	+	High_confidence	202	203	1067	62.197084	6.389146	chr12	104863461	104865746	LINE|L1|HAL1	-	chr12	104864891	104871765	STRG.47027.1	+	104864891,104865992,104869020,104870161	104865071,104866080,104869181,104871765	0.919400
omental_fat_pad_female_adult_51_years	chr2	11345436	11345442	11345436	-	High_confidence	76	98	181	10.550771	5.993534	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11179758	11345407	ROCK2|NM_001321643.1	-	11179758,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345407	0.790055
omental_fat_pad_female_adult_51_years	chr5	38468338	38468485	38468436	-	High_confidence	125	125	754	43.951829	6.619986	chr5	38468426	38468568	SINE|MIR|MIRc	-	chr5	38466162	38468339	AC010457.1|ENST00000510137.1	-	38466162,38468238	38466398,38468339	0.793103
omental_fat_pad_female_adult_51_years	chr13	40350303	40350446	40350410	-	High_confidence	56	73	272	15.855302	6.794778	chr13	40350403	40350604	SINE|MIR|MIR3	+	chr13	40079109	40350653	STRG.48101.1	-	40079109,40094535,40095418,40097856,40117034,40119462,40343956,40350108	40082316,40094632,40095517,40097967,40117140,40119525,40344205,40350653	0.709559
omental_fat_pad_female_adult_51_years	chr10	35449714	35449735	35449714	+	RAMPAGE_only	36	36	210	12.241226	6.021360	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.604762
omental_fat_pad_female_adult_51_years	chr1	46804345	46804370	46804345	+	RAMPAGE_only	7	7	27	1.573872	3.748329	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.777778
omental_fat_pad_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	149	150	150	8.743733	5.134123	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.940000
omental_fat_pad_female_adult_51_years	chr13	40377074	40377080	40377076	-	High_confidence	3	5	11	0.641207	3.277613	chr13	40376963	40377218	LINE|L2|L2a	-	chr13	40289072	40377292	STRG.48101.3	-	40289072,40343956,40350108,40377050	40337410,40344205,40350302,40377292	0.818182
omental_fat_pad_female_adult_51_years	chr14	102235393	102235417	102235416	-	High_confidence	7	7	16	0.932665	3.640224	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102226139	102235424	MOK|ENST00000561150.5	-	102226139,102232534,102233687,102235364	102226408,102232671,102233789,102235424	0.500000
omental_fat_pad_female_adult_51_years	chr13	52570323	52570324	52570323	+	RAMPAGE_only	13	14	18	1.049248	3.503258	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.888889
omental_fat_pad_female_adult_51_years	chr5	31363478	31363503	31363491	+	High_confidence	11	16	56	3.264327	5.258544	chr5	31363433	31363540	LTR|ERVL-MaLR|MLT1J-int	-	chr5	31363416	31387114	STRG.19933.2	+	31363416,31365253,31386173	31363857,31365412,31387114	0.767857
omental_fat_pad_female_adult_51_years	chr14	24266033	24266036	24266035	+	RAMPAGE_only	7	10	12	0.699499	3.251629	chr14	24265914	24266204	DNA|hAT-Charlie|MER102c	-	chr14	24271209	24299035	STRG.49386.1	+	24271209,24292197,24298613	24271310,24292600,24299035	0.500000
omental_fat_pad_female_adult_51_years	chr17	4736357	4736404	4736357	-	High_confidence	5	6	33	1.923621	3.789717	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.909091
omental_fat_pad_female_adult_51_years	chrX	103577211	103577212	103577211	+	High_confidence	8	10	10	0.582916	2.521928	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
omental_fat_pad_female_adult_51_years	chr5	150778562	150778567	150778566	+	High_confidence	6	6	11	0.641207	2.921928	chr5	150778483	150778644	SINE|MIR|MIR3	-	chr5	150778804	150796734	SMIM3|ENST00000648745.1	+	150778804,150782473,150795429	150778972,150782590,150796734	0.909091
omental_fat_pad_female_adult_51_years	chr9	110489649	110489711	110489658	-	RAMPAGE_only	6	9	29	1.690455	4.074720	chr9	110489280	110489644	LTR|ERVL-MaLR|THE1B	-	chr9	110442478	110550054	SVEP1|ENST00000467821.1	-	110442478,110445836,110446899,110450058,110451288,110455589,110457255,110458470,110458951,110465864,110468939,110471363,110472158,110476203,110479634,110481241,110482360,110483585,110489649,110496814,110499040,110503037,110512925,110513947,110546114,110549848	110443720,110446038,110447057,110450260,110451402,110455703,110457352,110458562,110459113,110466026,110469101,110471597,110472323,110476315,110479756,110481436,110482492,110483693,110489779,110496933,110499238,110503217,110513105,110514106,110546291,110550054	0.827586
omental_fat_pad_female_adult_51_years	chr19	3062924	3062983	3062939	-	High_confidence	13	13	69	4.022117	4.990852	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.942029
omental_fat_pad_female_adult_51_years	chr15	42495260	42495261	42495260	+	High_confidence	6	7	7	0.408041	2.584963	chr15	42495111	42495456	LINE|L2|L2b	+	chr15	42495259	42533061	SNAP23|ENST00000249647.7	+	42495259,42511832,42512954,42513398,42515236,42528261,42529674,42531412	42495713,42511903,42512996,42513447,42515354,42528420,42529819,42533061	0.714286
omental_fat_pad_female_adult_51_years	chr16	8836526	8836545	8836544	+	RAMPAGE_only	5	7	18	1.049248	3.616875	chr16	8835358	8837970	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.777778
omental_fat_pad_female_adult_51_years	chr7	11193340	11193367	11193340	+	High_confidence	19	20	56	3.264327	3.895860	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.767857
omental_fat_pad_female_adult_51_years	chr12	15001807	15001811	15001810	+	High_confidence	4	4	9	0.524624	3.000000	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.888889
omental_fat_pad_female_adult_51_years	chr8	119875396	119875416	119875413	+	RAMPAGE_only	15	17	47	2.739703	5.030633	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.872340
omental_fat_pad_female_adult_51_years	chr2	227871048	227871054	227871053	+	High_confidence	16	17	25	1.457289	3.779471	chr2	227871080	227871251	SINE|MIR|MIR	+	chr2	227871053	227924344	DAW1|ENST00000373666.6	+	227871053,227885350,227889855,227891254,227893794,227898181,227903001,227904928,227906235,227907137,227912253,227918779,227921398,227923933	227871729,227885423,227890000,227891313,227893917,227898281,227903109,227905035,227906338,227907252,227912469,227918856,227921561,227924344	1.000000
omental_fat_pad_female_adult_51_years	chr5	77088058	77088062	77088061	+	High_confidence	9	14	18	1.049248	3.836592	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088058	77148523	ZBED3-AS1|ENST00000513591.5	+	77088058,77098654,77100235,77118319,77147651	77088472,77098747,77100391,77118521,77148523	0.777778
omental_fat_pad_female_adult_51_years	chr18	35467058	35467083	35467082	-	High_confidence	2	3	8	0.466332	2.521641	chr18	35467057	35467118	DNA|hAT-Charlie|MER5A	-	chr18	35445742	35467081	AC007998.3|ENST00000591141.1	-	35445742,35446874,35466623	35445900,35446955,35467081	0.625000
omental_fat_pad_female_adult_51_years	chr16	2757786	2757815	2757801	+	High_confidence	8	11	44	2.564828	4.879664	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2761707	STRG.54436.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746,2760300,2761560	2757945,2758547,2759047,2759172,2759402,2759661,2760008,2760499,2761707	1.000000
omental_fat_pad_female_adult_51_years	chr5	55982724	55982800	55982799	-	High_confidence	5	5	21	1.224123	3.721612	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.809524
omental_fat_pad_female_adult_51_years	chr9	111284874	111284875	111284874	-	High_confidence	66	66	89	5.187948	4.994973	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.932584
omental_fat_pad_female_adult_51_years	chr8	26366327	26366396	26366395	+	RAMPAGE_only	3	3	20	1.165831	3.621928	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	0.950000
omental_fat_pad_female_adult_51_years	chr16	20674715	20674727	20674715	+	High_confidence	6	6	10	0.582916	2.721928	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	1.000000
omental_fat_pad_female_adult_51_years	chr19	6702618	6702650	6702649	-	High_confidence	3	3	8	0.466332	2.750000	chr19	6702615	6702750	SINE|Alu|AluSz	+	chr19	6697661	6702872	C3|ENST00000602053.1	-	6697661,6702126,6702470	6697794,6702212,6702872	0.875000
omental_fat_pad_female_adult_51_years	chr11	61249439	61249454	61249453	+	High_confidence	12	12	36	2.098496	4.038562	chr11	61249400	61249513	LINE|L2|L2a	+	chr11	61249332	61251418	PGA5|ENST00000541528.1	+	61249332,61249915,61251131	61249813,61250014,61251418	0.750000
omental_fat_pad_female_adult_51_years	chr9	129488705	129488905	129488856	+	High_confidence	42	42	255	14.864345	5.658008	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.952941
omental_fat_pad_female_adult_51_years	chr14	95481761	95481770	95481761	-	High_confidence	17	19	39	2.273370	4.702565	chr14	95481614	95481737	LTR|ERVL|LTR33A_	-	chr14	95417603	95481810	STRG.51425.1	-	95417603,95432078,95433259,95436819,95439032,95439611,95439913,95443154,95444484,95445908,95449930,95452246,95455376,95457176,95465930,95467794,95475677,95481274,95481607	95418026,95432117,95433409,95436981,95439162,95439784,95440075,95443289,95444628,95446091,95450105,95452383,95455724,95457338,95466240,95467967,95475835,95481407,95481810	0.948718
omental_fat_pad_female_adult_51_years	chr13	110314083	110314141	110314140	-	High_confidence	39	59	198	11.541727	5.657910	chr13	110314011	110314270	LINE|L1|L1MD3	+	chr13	110307825	110314115	STRG.49188.1	-	110307825,110312922,110313872	110309987,110313393,110314115	0.974747
omental_fat_pad_female_adult_51_years	chr15	75347065	75347074	75347065	+	High_confidence	3	3	11	0.641207	2.913977	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347068	75349024	NEIL1|ENST00000568881.1	+	75347068,75347958,75348883	75347473,75347999,75349024	0.727273
omental_fat_pad_female_adult_51_years	chr17	55882299	55882303	55882299	+	High_confidence	7	9	13	0.757790	3.392747	chr17	55882106	55882477	LTR|ERVL-MaLR|THE1C	+	chr17	55882300	56449186	ANKFN1|ENST00000635860.1	+	55882300,55938658,55965578,56046071,56227916,56326220,56350765,56353835,56372645,56374600,56440326,56442842,56449078	55882395,55938786,55965676,56046325,56227957,56326355,56350967,56354046,56372840,56374714,56440424,56442933,56449186	0.538462
omental_fat_pad_female_adult_51_years	chr11	3380960	3380961	3380960	+	RAMPAGE_only	21	22	22	1.282414	3.845351	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3383461	3397239	TSSC2|ENST00000526488.5	+	3383461,3384166,3384898,3393085,3395712,3397088	3383546,3384284,3384968,3393159,3395888,3397239	0.681818
omental_fat_pad_female_adult_51_years	chr19	9140393	9140428	9140427	+	High_confidence	28	28	76	4.430158	4.902304	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.815789
omental_fat_pad_female_adult_51_years	chr16	20674403	20674408	20674404	+	High_confidence	12	19	33	1.923621	4.476410	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.909091
omental_fat_pad_female_adult_51_years	chr14	81192669	81192682	81192669	-	RAMPAGE_only	2	2	7	0.408041	2.584963	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.857143
omental_fat_pad_female_adult_51_years	chr4	102431179	102431180	102431179	-	High_confidence	13	13	16	0.932665	3.640224	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.687500
omental_fat_pad_female_adult_51_years	chr7	134432428	134432453	134432435	-	High_confidence	4	5	12	0.699499	3.095795	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.833333
omental_fat_pad_female_adult_51_years	chr4	72895346	72895444	72895367	-	High_confidence	73	74	149	8.685441	6.045775	chr4	72895289	72895343	SINE|MIR|MIR	-	chr4	72280968	72895610	STRG.17793.1	-	72280968,72288750,72290854,72295653,72298276,72303916,72305986,72311047,72312290,72313676,72315857,72318571,72319331,72319857,72320713,72323013,72339493,72414814,72548477,72653614,72666017,72667267,72695102,72699817,72783932,72809055,72815182,72894447,72895307	72283704,72288868,72291062,72295786,72298442,72304080,72309520,72311181,72313492,72313822,72315971,72318704,72319475,72319963,72320870,72323097,72339693,72414971,72548884,72659383,72666121,72667327,72695263,72775995,72784036,72809134,72815284,72894563,72895610	0.805369
omental_fat_pad_female_adult_51_years	chr13	30743883	30743892	30743883	+	RAMPAGE_only	3	4	10	0.582916	2.947703	chr13	30743467	30743894	LINE|L2|L2c	+	chr13	30735507	30764426	ALOX5AP|ENST00000380490.4	+	30735507,30744059,30752051,30755943,30763943	30735675,30744159,30752122,30756025,30764426	0.700000
omental_fat_pad_female_adult_51_years	chr20	3873806	3873812	3873811	+	RAMPAGE_only	8	9	16	0.932665	3.452820	chr20	3873828	3874352	LINE|L1|L1ME3A	+	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.937500
omental_fat_pad_female_adult_51_years	chrX	103431648	103431650	103431649	+	High_confidence	10	17	21	1.224123	4.011365	chrX	103431274	103435037	LTR|ERV1|HERVH-int	-	chrX	103431547	103454692	STRG.68141.3	+	103431547,103450496	103431918,103454692	0.714286
omental_fat_pad_female_adult_51_years	chr1	108599849	108599855	108599849	+	RAMPAGE_only	8	8	14	0.816082	3.182006	chr1	108599722	108599999	SINE|Alu|AluSx1	+	chr1	108560348	108639327	FAM102B|NM_001010883.2	+	108560348,108600565,108606222,108612177,108616381,108624644,108628166,108628394,108628676,108629587,108635107	108560565,108600686,108606252,108612294,108616428,108624748,108628262,108628584,108628804,108629657,108639327	0.785714
omental_fat_pad_female_adult_51_years	chr8	56559496	56559497	56559496	-	High_confidence	294	300	387	22.558830	7.193949	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.511628
omental_fat_pad_female_adult_51_years	chr19	9709659	9709660	9709659	+	High_confidence	18	18	20	1.165831	3.431624	chr19	9709309	9709779	LTR|ERV1|LTR10A	+	chr19	9709678	9719903	STRG.60702.1	+	9709678,9719542	9709992,9719903	0.900000
omental_fat_pad_female_adult_51_years	chr1	153967486	153967504	153967486	+	High_confidence	16	19	36	2.098496	4.172186	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.861111
omental_fat_pad_female_adult_51_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	24	24	24	1.398997	4.001629	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
omental_fat_pad_female_adult_51_years	chr8	11864387	11864445	11864444	-	RAMPAGE_only	11	11	24	1.398997	4.251629	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.791667
omental_fat_pad_female_adult_51_years	chr10	6737334	6737342	6737334	+	High_confidence	4	4	19	1.107539	3.503258	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.947368
omental_fat_pad_female_adult_51_years	chr12	105233175	105233220	105233219	-	High_confidence	56	61	123	7.169861	6.005114	chr12	105233175	105233274	LINE|L2|L2c	+	chr12	105177109	105233154	APPL2|ENST00000547809.5	-	105177109,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105233090	105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105233154	0.934959
omental_fat_pad_female_adult_51_years	chr9	128921399	128921428	128921399	+	High_confidence	17	17	27	1.573872	3.931209	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.925926
omental_fat_pad_female_adult_51_years	chr3	99691445	99691473	99691472	+	RAMPAGE_only	3	3	11	0.641207	2.921928	chr3	99691450	99691571	DNA|hAT-Charlie|MER5A1	+	chr3	99638621	99794508	COL8A1|ENST00000621757.1	+	99638621,99691398,99744896,99790679,99794229	99638664,99691568,99745021,99791010,99794508	0.727273
omental_fat_pad_female_adult_51_years	chr2	223944130	223944140	223944139	+	High_confidence	22	33	93	5.421114	5.974330	chr2	223944006	223944148	DNA|hAT-Charlie|MER113	+	chr2	223944097	223967714	STRG.11482.3	+	223944097,223959533,223963755,223966862	223951279,223960002,223963934,223967714	0.989247
omental_fat_pad_female_adult_51_years	chr9	134373102	134373106	134373105	+	RAMPAGE_only	5	5	10	0.582916	2.725481	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134371970	134440585	RXRA|ENST00000356384.4	+	134371970,134374006,134401395,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134372139,134374130,134401540,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440585	0.700000
omental_fat_pad_female_adult_51_years	chr6	31587009	31587021	31587009	+	High_confidence	10	16	26	1.515580	4.161978	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	1.000000
omental_fat_pad_female_adult_51_years	chr3	143824540	143824567	143824540	-	RAMPAGE_only	3	4	22	1.282414	3.975418	chr3	143824344	143824714	LINE|L2|L2a	+	chr3	143693209	143848485	SLC9A9|ENST00000474727.2	-	143693209,143795000,143796825,143848147	143693307,143795077,143796903,143848485	0.545455
omental_fat_pad_female_adult_51_years	chr19	45424343	45424383	45424382	-	High_confidence	5	5	18	1.049248	3.725481	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	1.000000
omental_fat_pad_female_adult_51_years	chr13	110179273	110179325	110179301	-	RAMPAGE_only	3	3	15	0.874373	3.807355	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	0.933333
omental_fat_pad_female_adult_51_years	chr5	180314282	180314302	180314301	-	RAMPAGE_only	4	4	10	0.582916	2.725481	chr5	180314158	180314284	SINE|MIR|MIRb	-	chr5	180300689	180353331	STRG.23081.2	-	180300689,180302422,180304771,180307175,180312429,180313806,180316763,180316962,180318792,180324187,180324815,180328276,180330699,180331494,180335827,180336478,180338492,180353210	180301608,180302584,180304939,180307303,180312544,180316461,180316861,180317058,180318956,180324305,180324895,180328338,180330834,180331553,180335953,180336577,180338600,180353331	0.900000
omental_fat_pad_female_adult_51_years	chr4	8436023	8436026	8436025	-	RAMPAGE_only	6	8	10	0.582916	2.947703	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.900000
omental_fat_pad_female_adult_51_years	chr5	67646810	67646812	67646810	-	High_confidence	15	23	27	1.573872	4.384517	chr5	67646558	67646761	SINE|MIR|MIRc	-	chr5	67627151	67646889	STRG.20516.1	-	67627151,67634306,67636807,67646605	67633335,67634395,67636948,67646889	0.740741
omental_fat_pad_female_adult_51_years	chr5	41150844	41150855	41150845	-	High_confidence	13	26	50	2.914578	4.890021	chr5	41150606	41150900	SINE|Alu|AluSx4	+	chr5	41142117	41150854	STRG.20116.4	-	41142117,41149240,41149934,41150626	41143006,41149482,41150025,41150854	0.940000
omental_fat_pad_female_adult_51_years	chr6	43013380	43013393	43013392	-	High_confidence	4	4	10	0.582916	2.846439	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
omental_fat_pad_female_adult_51_years	chr11	123060156	123060256	123060168	-	High_confidence	64	65	481	28.038236	5.348183	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.525988
omental_fat_pad_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	1031	1192	1995	116.291643	5.003779	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.983459
omental_fat_pad_female_adult_51_years	chr4	81154211	81154222	81154221	-	High_confidence	8	8	23	1.340706	3.624680	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.956522
omental_fat_pad_female_adult_51_years	chr13	113815608	113815622	113815608	+	High_confidence	3	3	9	0.524624	2.500000	chr13	113815414	113815766	LTR|ERVL-MaLR|THE1A	+	chr13	113815609	113842841	GAS6-AS1|NR_044995.2	+	113815609,113833491,113834683,113838076,113842368	113815691,113833579,113834764,113838247,113842841	0.555556
omental_fat_pad_female_adult_51_years	chr5	32403105	32403109	32403105	-	RAMPAGE_only	4	4	10	0.582916	2.947703	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.900000
omental_fat_pad_female_adult_51_years	chr5	173790892	173790942	173790917	-	High_confidence	4	5	23	1.340706	3.725651	chr5	173790732	173790899	DNA|hAT-Tip100|MER115	-	chr5	173786789	173790942	LINC01485|NR_108028.1	-	173786789,173787688,173790635,173790808	173787247,173787745,173790727,173790942	0.608696
omental_fat_pad_female_adult_51_years	chr18	72694411	72694425	72694412	+	High_confidence	43	55	82	4.779907	4.947636	chr18	72693864	72695838	LTR|ERV1|MER61-int	+	chr18	72694396	72697749	STRG.60176.1	+	72694396,72695745,72697277	72694488,72695889,72697749	0.890244
omental_fat_pad_female_adult_51_years	chr16	20676186	20676202	20676201	-	High_confidence	6	6	11	0.641207	2.921928	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.727273
omental_fat_pad_female_adult_51_years	chr11	65429706	65430094	65429853	+	RAMPAGE_only	15	18	387	22.558830	6.591673	chr11	65429592	65429862	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.997416
omental_fat_pad_female_adult_51_years	chr7	101308295	101308325	101308295	+	High_confidence	2	2	9	0.524624	2.947703	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.888889
omental_fat_pad_female_adult_51_years	chr1	226278060	226278099	226278083	-	RAMPAGE_only	8	8	28	1.632163	4.378783	chr1	226277990	226278133	SINE|Alu|AluSz6	-	chr1	226231148	226309172	LIN9|ENST00000460719.5	-	226231148,226233095,226233343,226238970,226250838,226265532,226266212,226267956,226277774,226286332,226287663,226297718,226301172,226309108	226232606,226233193,226233523,226239096,226250919,226265634,226266332,226268090,226277932,226286458,226287797,226297813,226301205,226309172	1.000000
omental_fat_pad_female_adult_51_years	chr15	92939471	92939515	92939481	+	High_confidence	3	3	16	0.932665	3.240224	chr15	92939359	92939489	DNA|hAT-Charlie|MER5A	+	chr15	92939653	92949228	CHD2|ENST00000637613.1	+	92939653,92941821,92942842,92944414,92945820,92946037,92946247,92948951	92939718,92941955,92943068,92944515,92945865,92946082,92946340,92949228	0.625000
omental_fat_pad_female_adult_51_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	25	27	65	3.788951	5.194206	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.953846
omental_fat_pad_female_adult_51_years	chr2	48479384	48479385	48479384	+	RAMPAGE_only	21	21	24	1.398997	4.004886	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48471310	48515385	STRG.7445.3	+	48471310,48474682,48479483,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48471367,48474819,48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515385	0.916667
omental_fat_pad_female_adult_51_years	chr9	73080428	73080473	73080444	-	High_confidence	3	5	25	1.457289	3.882045	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.640000
omental_fat_pad_female_adult_51_years	chr9	33068823	33068842	33068829	-	RAMPAGE_only	5	5	12	0.699499	2.845351	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.916667
omental_fat_pad_female_adult_51_years	chr15	80059915	80059933	80059918	+	High_confidence	39	44	110	6.412071	4.828587	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.981818
omental_fat_pad_female_adult_51_years	chr5	172958912	172958919	172958912	+	High_confidence	10	10	23	1.340706	3.327340	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.565217
omental_fat_pad_female_adult_51_years	chr9	72363523	72363574	72363573	-	High_confidence	6	6	25	1.457289	4.293661	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.680000
omental_fat_pad_female_adult_51_years	chr4	72895563	72895596	72895572	-	High_confidence	10	10	63	3.672368	5.301125	chr4	72895343	72895742	LTR|ERVL-MaLR|MLT1A1	-	chr4	72280968	72895610	STRG.17793.1	-	72280968,72288750,72290854,72295653,72298276,72303916,72305986,72311047,72312290,72313676,72315857,72318571,72319331,72319857,72320713,72323013,72339493,72414814,72548477,72653614,72666017,72667267,72695102,72699817,72783932,72809055,72815182,72894447,72895307	72283704,72288868,72291062,72295786,72298442,72304080,72309520,72311181,72313492,72313822,72315971,72318704,72319475,72319963,72320870,72323097,72339693,72414971,72548884,72659383,72666121,72667327,72695263,72775995,72784036,72809134,72815284,72894563,72895610	0.888889
omental_fat_pad_female_adult_51_years	chr16	8843601	8843612	8843601	+	RAMPAGE_only	3	3	11	0.641207	2.521928	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.909091
omental_fat_pad_female_adult_51_years	chr3	186990718	186990738	186990737	+	RAMPAGE_only	5	5	14	0.816082	2.638460	chr3	186990703	186990831	SINE|Alu|AluSq2	+	chr3	186986315	187042998	ST6GAL1|ENST00000448408.5	+	186986315,186996547,187038741,187042653	186986717,186996673,187038873,187042998	0.571429
omental_fat_pad_female_adult_51_years	chr20	49504622	49504682	49504680	-	RAMPAGE_only	9	16	50	2.914578	4.531663	chr20	49504413	49504710	SINE|Alu|AluSp	+	chr20	49503873	49568146	PTGIS|ENST00000244043.4	-	49503873,49511027,49513079,49514226,49524057,49539569,49544304,49547840,49550065,49568042	49508064,49511179,49513261,49514395,49524239,49539721,49544448,49548019,49550189,49568146	0.980000
omental_fat_pad_female_adult_51_years	chr3	33838219	33838257	33838256	+	RAMPAGE_only	4	4	9	0.524624	2.750000	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.777778
omental_fat_pad_female_adult_51_years	chr2	73072193	73072215	73072193	-	High_confidence	2	2	10	0.582916	2.921928	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.800000
omental_fat_pad_female_adult_51_years	chrX	16712889	16712907	16712889	-	High_confidence	9	9	27	1.573872	4.469670	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.962963
omental_fat_pad_female_adult_51_years	chr12	16353884	16353885	16353884	+	High_confidence	1080	1121	1386	80.792089	5.430937	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.662338
omental_fat_pad_female_adult_51_years	chr3	113625940	113625943	113625942	+	High_confidence	5	9	12	0.699499	3.095795	chr3	113625438	113625948	LINE|L1|L1MA3	-	chr3	113625913	113627920	SIDT1|ENST00000498152.1	+	113625913,113627645	113626215,113627920	0.583333
omental_fat_pad_female_adult_51_years	chr12	15764153	15764160	15764158	-	RAMPAGE_only	181	259	577	33.634225	6.598384	chr12	15763995	15764357	LTR|ERVL-MaLR|THE1B	-	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.599653
omental_fat_pad_female_adult_51_years	chr20	33401581	33401582	33401581	+	RAMPAGE_only	6	6	8	0.466332	2.750000	chr20	33401623	33401937	DNA|hAT-Charlie|MER33	+	chr20	33490074	33618546	CBFA2T2|ENST00000471007.1	+	33490074,33606955,33611093,33618447	33490301,33607099,33611335,33618546	0.500000
omental_fat_pad_female_adult_51_years	chr14	49789498	49789531	49789498	-	RAMPAGE_only	2	2	7	0.408041	2.521641	chr14	49789398	49789451	LINE|L2|L2a	-	chr14	49783813	49800800	NEMF|ENST00000556691.5	-	49783813,49784924,49785091,49785219,49786717,49789145,49789495,49795790,49799474,49799635,49800419	49784713,49785004,49785135,49785320,49786750,49789343,49789573,49795944,49799524,49799678,49800800	1.000000
omental_fat_pad_female_adult_51_years	chr12	31959178	31959194	31959178	+	High_confidence	3	3	11	0.641207	2.921928	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31981060	KIAA1551|ENST00000540924.5	+	31959407,31960776,31980877	31959491,31960871,31981060	0.636364
omental_fat_pad_female_adult_51_years	chr10	10911570	10911597	10911570	+	RAMPAGE_only	2	2	8	0.466332	2.750000	chr10	10911494	10911655	LTR|ERVL|LTR86B1	-	chr10	10954267	11329053	STRG.37755.9	+	10954267,11165485,11217424,11249152,11257737,11266597,11270665,11275056,11288417,11314138,11321206,11325835,11328925	11005440,11165682,11217507,11249201,11257872,11266677,11270824,11275120,11288552,11314270,11321386,11325979,11329053	0.625000
omental_fat_pad_female_adult_51_years	chr1	51403428	51403433	51403428	-	RAMPAGE_only	4	4	10	0.582916	2.725481	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.900000
omental_fat_pad_female_adult_51_years	chr20	44532569	44532570	44532569	+	High_confidence	9	9	11	0.641207	3.121928	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531915	44624247	PKIG|ENST00000372887.5	+	44531915,44582584,44589796,44614533,44623932	44531978,44582731,44589866,44614707,44624247	0.727273
omental_fat_pad_female_adult_51_years	chr12	91179462	91179526	91179462	-	High_confidence	3899	4032	15264	889.762226	7.343709	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.510220
omental_fat_pad_female_adult_51_years	chr9	92559076	92559134	92559123	-	RAMPAGE_only	6	9	23	1.340706	3.732159	chr9	92557942	92559647	LINE|L1|L1PB1	-	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.956522
omental_fat_pad_female_adult_51_years	chr3	186856640	186856950	186856904	+	RAMPAGE_only	19	20	296	17.254299	5.653885	chr3	186856773	186857269	LTR|ERVL-MaLR|MLT1K	-	chr3	186842703	186858463	ADIPOQ|ENST00000444204.2	+	186842703,186845556,186853050,186854183	186842749,186845607,186853272,186858463	1.000000
omental_fat_pad_female_adult_51_years	chr2	46540983	46540986	46540985	+	High_confidence	3	5	7	0.408041	2.584963	chr2	46540940	46541066	SINE|MIR|MIR3	-	chr2	46541427	46541692	STRG.7400.1	+	46541427	46541692	0.571429
omental_fat_pad_female_adult_51_years	chr12	8681599	8681600	8681599	+	High_confidence	10	10	15	0.874373	3.506891	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.533333
omental_fat_pad_female_adult_51_years	chr19	20423688	20423704	20423703	-	RAMPAGE_only	21	28	67	3.905534	4.468436	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.791045
omental_fat_pad_female_adult_51_years	chr9	97575039	97575040	97575039	+	RAMPAGE_only	84	84	93	5.421114	4.944291	chr9	97574036	97575455	LTR|ERV1|LTR12C	+	chr9	97501662	97601748	STRG.36446.2	+	97501662,97524140,97553280,97562731,97564037,97565847,97568893,97591290,97599633	97501803,97524308,97553400,97562821,97564168,97565955,97575486,97591435,97601748	0.946237
omental_fat_pad_female_adult_51_years	chr19	38376013	38376048	38376013	+	RAMPAGE_only	8	8	32	1.865330	4.481728	chr19	38375972	38376110	SINE|MIR|MIR	-	chr19	38375008	38382753	PSMD8|ENST00000592035.5	+	38375008,38376159,38376351,38379239,38380898,38382116	38375509,38376232,38376454,38379405,38380999,38382753	0.531250
omental_fat_pad_female_adult_51_years	chr11	65427837	65428515	65428514	+	RAMPAGE_only	66	118	1798	104.808208	7.057051	chr11	65428531	65428593	DNA|hAT-Tip100|MamRep4096	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
omental_fat_pad_female_adult_51_years	chr12	9965312	9965321	9965320	+	RAMPAGE_only	18	20	32	1.865330	4.478232	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.843750
omental_fat_pad_female_adult_51_years	chr5	150779647	150779687	150779653	-	RAMPAGE_only	13	13	39	2.273370	4.663231	chr5	150779612	150779818	LINE|L2|L2a	+	chr5	150708439	150759109	DCTN4|ENST00000447998.6	-	150708439,150715564,150718275,150719715,150722906,150730630,150731043,150731415,150733367,150742113,150753478,150756416,150758858	150711362,150715662,150718383,150719770,150722980,150730740,150731156,150731489,150733475,150742157,150753657,150756487,150759109	0.666667
omental_fat_pad_female_adult_51_years	chr2	227534916	227534933	227534916	+	RAMPAGE_only	5	5	14	0.816082	3.180833	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.785714
omental_fat_pad_female_adult_51_years	chr11	90167960	90167961	90167960	+	High_confidence	57	57	59	3.439201	4.532206	chr11	90167016	90168370	LTR|ERV1|LTR12C	+	chr11	90167914	90192881	STRG.43166.2	+	90167914,90168928,90173823,90175971,90177852,90181619,90182915,90191557	90168491,90168992,90173915,90176062,90178117,90181701,90183008,90192881	0.966102
omental_fat_pad_female_adult_51_years	chr4	87524562	87524584	87524562	-	RAMPAGE_only	5	6	10	0.582916	3.121928	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87494416	87528619	SPARCL1|ENST00000535835.5	-	87494416,87494980,87499520,87504821,87528554	87494598,87495127,87499585,87504923,87528619	0.700000
omental_fat_pad_female_adult_51_years	chr8	38825352	38825361	38825360	+	RAMPAGE_only	11	12	20	1.165831	3.746439	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.850000
omental_fat_pad_female_adult_51_years	chr10	62056930	62056947	62056930	+	RAMPAGE_only	9	9	17	0.990956	3.690117	chr10	62056749	62056941	DNA|hAT-Charlie|MER58A	+	chr10	62049210	62096948	ARID5B|NM_001244638.1	+	62049210,62050887,62057116,62059242,62069699,62085701,62090861	62049483,62051000,62057318,62059295,62069797,62085900,62096948	0.941176
omental_fat_pad_female_adult_51_years	chr1	12356407	12356426	12356414	+	High_confidence	7	8	20	1.165831	2.858118	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12356350	12510346	VPS13D|ENST00000646411.1	+	12356350,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12356524,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	0.950000
omental_fat_pad_female_adult_51_years	chr2	36513734	36513757	36513735	+	High_confidence	7	11	40	2.331662	4.576618	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.575000
omental_fat_pad_female_adult_51_years	chr8	109379949	109380016	109380015	+	RAMPAGE_only	47	48	102	5.945738	5.645946	chr8	109378677	109380056	LTR|ERVL|ERVL-E-int	+	chr8	109362476	109531271	PKHD1L1|NM_177531.4	+	109362476,109364546,109381369,109382462,109384069,109385536,109388496,109389078,109390451,109394414,109396026,109398458,109400075,109401496,109404553,109404994,109406334,109408048,109409864,109412264,109413420,109419096,109420517,109425084,109427001,109429339,109429931,109433105,109435189,109436337,109438323,109438896,109440709,109441274,109442006,109442945,109443675,109444660,109448142,109449337,109450974,109452123,109452717,109454166,109454722,109456261,109459594,109461771,109464215,109466577,109475117,109476507,109477224,109479550,109479990,109481432,109482986,109485043,109486647,109489951,109490971,109491872,109493660,109496918,109497149,109498461,109498654,109504326,109507662,109508096,109510776,109515169,109518166,109522185,109522743,109523232,109526783,109530079	109362653,109364636,109381514,109382571,109384127,109385630,109388550,109389152,109390494,109394485,109396137,109398548,109400344,109401588,109404713,109405130,109406478,109408206,109409978,109412414,109413545,109419260,109420690,109425232,109427156,109429462,109430037,109433216,109435354,109436459,109438456,109439092,109440852,109441379,109442195,109443116,109443902,109445645,109448391,109449487,109451149,109452280,109452874,109454246,109454852,109456391,109459836,109461908,109465245,109466769,109475269,109476667,109477396,109479639,109480139,109481562,109483105,109485173,109486821,109490055,109491101,109491994,109493751,109497067,109497272,109498573,109498771,109504492,109507895,109508264,109510934,109515305,109518508,109522337,109522890,109523386,109527020,109531271	0.950980
omental_fat_pad_female_adult_51_years	chr13	45206631	45206634	45206633	+	High_confidence	18	35	45	2.623120	4.600456	chr13	45206646	45206717	SINE|MIR|MIRb	+	chr13	45206354	45267333	GTF2F2|ENST00000494087.5	+	45206354,45252870,45267232	45207505,45252970,45267333	0.911111
omental_fat_pad_female_adult_51_years	chr3	135965670	135965742	135965723	+	High_confidence	13	21	96	5.595989	5.627479	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.979167
omental_fat_pad_female_adult_51_years	chr18	80148048	80148049	80148048	+	High_confidence	107	112	124	7.228152	5.989194	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.693548
omental_fat_pad_female_adult_51_years	chr22	37755641	37755658	37755657	+	RAMPAGE_only	3	4	8	0.466332	2.750000	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	0.875000
omental_fat_pad_female_adult_51_years	chr4	170226587	170226614	170226587	+	High_confidence	5	5	17	0.990956	3.750000	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.529412
omental_fat_pad_female_adult_51_years	chr1	196404228	196404273	196404272	-	High_confidence	108	136	340	19.819127	5.037067	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196305135	196404271	STRG.4895.11	-	196305135,196315891,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196305345,196316026,196326889,196331261,196334060,196340570,196342249,196373248,196398671,196404271	0.947059
omental_fat_pad_female_adult_51_years	chr20	3795750	3795789	3795750	+	High_confidence	46	50	296	17.254299	5.617290	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.983108
omental_fat_pad_female_adult_51_years	chr21	28048446	28048447	28048446	+	High_confidence	677	688	751	43.776954	4.454438	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.966711
omental_fat_pad_female_adult_51_years	chr12	21818179	21818180	21818179	-	RAMPAGE_only	8	8	9	0.524624	2.500000	chr12	21817882	21818136	LINE|L1|L1PA8A	-	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	0.888889
omental_fat_pad_female_adult_51_years	chr12	12927723	12927744	12927733	+	High_confidence	6	6	16	0.932665	3.875000	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927725	12980307	GPRC5D-AS1|ENST00000545914.5	+	12927725,12978940,12979523,12979999	12927803,12979021,12979622,12980307	0.500000
omental_fat_pad_female_adult_51_years	chr2	182050007	182050046	182050007	+	RAMPAGE_only	2	2	11	0.641207	3.027169	chr2	182049629	182050022	LINE|L1|L1MEg1	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.909091
omental_fat_pad_female_adult_51_years	chr17	4143199	4143215	4143199	+	High_confidence	111	118	220	12.824141	5.770007	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.995455
omental_fat_pad_female_adult_51_years	chr16	87950474	87950488	87950477	+	High_confidence	50	55	176	10.259313	4.907400	chr16	87950440	87950735	SINE|Alu|AluSx1	-	chr16	87950482	88033219	STRG.56378.4	+	87950482,87975047,87981035,87984059,88004294,88006089,88018427,88027482,88033108	87950927,87975185,87981127,87984259,88004411,88006265,88018667,88027650,88033219	0.971591
omental_fat_pad_female_adult_51_years	chr11	65430479	65430816	65430815	+	RAMPAGE_only	48	51	502	29.262358	5.685353	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998008
omental_fat_pad_female_adult_51_years	chr17	75742732	75742759	75742758	+	RAMPAGE_only	2	2	6	0.349749	2.584963	chr17	75742779	75742995	SINE|MIR|MIRb	+	chr17	75724695	75757818	ITGB4|NM_001005619.1	+	75724695,75727194,75727403,75727650,75728376,75729264,75730240,75730874,75731245,75731811,75732162,75733489,75736050,75736287,75736564,75737321,75737537,75739671,75739879,75740357,75740792,75740981,75742340,75742581,75743712,75748840,75750110,75750679,75750973,75752173,75752445,75754575,75755054,75755700,75756428,75756703,75756942,75757199,75757415	75724782,75727277,75727505,75727855,75728473,75729436,75730504,75730964,75731368,75731973,75732239,75733692,75736154,75736386,75736694,75737444,75737644,75739705,75740071,75740461,75740851,75741005,75742489,75742761,75743861,75749045,75750268,75750860,75751111,75752356,75752577,75754815,75755213,75755850,75756617,75756859,75757107,75757310,75757818	1.000000
omental_fat_pad_female_adult_51_years	chr9	19126416	19126425	19126417	-	RAMPAGE_only	5	8	22	1.282414	3.784942	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19115769	19127475	STRG.34798.2	-	19115769,19118320,19119649,19120879,19123564,19126396,19127418	19116649,19118455,19119831,19121165,19126309,19126448,19127475	0.954545
omental_fat_pad_female_adult_51_years	chr8	102929989	102930020	102929989	+	High_confidence	12	12	41	2.389954	5.113650	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	103002430	STRG.33535.1	+	102930181,102937623,102941920,102977586,103000008	102930518,102937757,102942053,102978955,103002430	0.829268
omental_fat_pad_female_adult_51_years	chrX	151971256	151971310	151971256	-	High_confidence	2	2	10	0.582916	2.503258	chrX	151971131	151971345	LINE|L1|L1ME3A	+	chrX	151969398	151970552	GABRE|ENST00000465405.1	-	151969398,151970184	151969736,151970552	0.600000
omental_fat_pad_female_adult_51_years	chr8	102930239	102930240	102930239	+	High_confidence	6	6	9	0.524624	2.947703	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.777778
omental_fat_pad_female_adult_51_years	chr12	131000409	131000420	131000419	+	RAMPAGE_only	3	3	9	0.524624	2.750000	chr12	131000459	131000769	SINE|Alu|AluSx1	+	chr12	131002498	131141460	ADGRD1|ENST00000376682.8	+	131002498,131003184,131004185,131005971,131014198,131076800,131084539,131104830,131105753,131108723,131118384,131120846,131131724,131136036,131136972,131138136,131139167	131002837,131003302,131004296,131006047,131014340,131076874,131084663,131104934,131105865,131108877,131118451,131120913,131131816,131136163,131137014,131138229,131141460	0.888889
omental_fat_pad_female_adult_51_years	chr16	72073244	72073245	72073244	+	RAMPAGE_only	55	57	61	3.555785	4.791064	chr16	72072861	72073376	LTR|ERV1|LTR10B	+	chr16	72063228	72077246	HPR|ENST00000561690.1	+	72063228,72073891,72074283,72075144,72076302,72076955	72063260,72073977,72074385,72075219,72076350,72077246	0.672131
omental_fat_pad_female_adult_51_years	chr11	112176365	112176373	112176365	+	High_confidence	19	21	58	3.380910	5.124717	chr11	112176309	112176508	LINE|L2|L2c	-	chr11	112176365	112218929	BCO2|NM_001256397.1	+	112176365,112179277,112193473,112193878,112194652,112199698,112200612,112202022,112213723,112214761,112216219,112217760	112176458,112179482,112193697,112193994,112194755,112199827,112200773,112202190,112213861,112214926,112216330,112218929	0.862069
omental_fat_pad_female_adult_51_years	chr8	85378112	85378113	85378112	-	High_confidence	16	18	18	1.049248	2.895424	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.944444
omental_fat_pad_female_adult_51_years	chr3	188153209	188153241	188153209	+	High_confidence	4	4	11	0.641207	2.646439	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.636364
omental_fat_pad_female_adult_51_years	chr5	42175253	42175291	42175290	-	High_confidence	83	84	201	11.716602	4.856065	chr5	42175074	42175255	LTR|ERVL-MaLR|MSTC	-	chr5	42153223	42175274	STRG.20134.2	-	42153223,42159336,42175152	42157411,42159446,42175274	0.771144
omental_fat_pad_female_adult_51_years	chr14	95526051	95526077	95526076	-	High_confidence	4	5	14	0.816082	3.180833	chr14	95525562	95526081	LINE|L2|L2b	+	chr14	95522036	95526035	STRG.51420.1	-	95522036,95522551,95525920	95522423,95522684,95526035	0.500000
omental_fat_pad_female_adult_51_years	chr6	159681069	159681124	159681069	-	RAMPAGE_only	3	3	18	1.049248	3.308271	chr6	159680968	159681092	LINE|L1|L1ME4c	+	chr6	159679115	159693228	STRG.27022.6	-	159679115,159680822,159684853,159688125,159692660,159693144	159680659,159682638,159685033,159688242,159692863,159693228	0.722222
omental_fat_pad_female_adult_51_years	chr17	77127869	77127873	77127872	+	High_confidence	29	30	50	2.914578	4.958563	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.540000
omental_fat_pad_female_adult_51_years	chr17	79030180	79030214	79030180	+	RAMPAGE_only	13	13	39	2.273370	4.233998	chr17	79030152	79030319	LINE|L1|L1ME4a	-	chr17	79034184	79048247	C1QTNF1|ENST00000581774.5	+	79034184,79043954,79046554,79047537	79034533,79044123,79046694,79048247	0.974359
omental_fat_pad_female_adult_51_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	21	23	29	1.690455	3.200289	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.931034
omental_fat_pad_female_adult_51_years	chr16	56540564	56540565	56540564	+	High_confidence	137	137	140	8.160817	5.636506	chr16	56540554	56540864	SINE|Alu|AluSx1	+	chr16	56540777	56541890	STRG.55661.1	+	56540777	56541890	0.864286
omental_fat_pad_female_adult_51_years	chr9	13386132	13386133	13386132	+	RAMPAGE_only	99	99	129	7.519610	5.588232	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.922481
omental_fat_pad_female_adult_51_years	chr14	64020041	64020090	64020089	+	RAMPAGE_only	3	3	11	0.641207	3.277613	chr14	64020123	64020208	SINE|Alu|AluJb	+	chr14	64003023	64049279	SYNE2|ENST00000557005.1	+	64003023,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024911,64025129,64026578,64027483,64029894,64031015,64047999	64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64049279	0.909091
omental_fat_pad_female_adult_51_years	chr18	63891290	63891306	63891290	+	High_confidence	3	3	8	0.466332	3.000000	chr18	63891132	63891291	DNA|hAT-Tip100|MER45A	-	chr18	63890556	63897200	SERPINB2|ENST00000443281.1	+	63890556,63891435,63895263,63897090	63890900,63891612,63895383,63897200	0.625000
omental_fat_pad_female_adult_51_years	chr12	122064332	122064347	122064346	+	RAMPAGE_only	6	6	18	1.049248	3.461320	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.777778
omental_fat_pad_female_adult_51_years	chr4	3929573	3929599	3929598	-	RAMPAGE_only	6	7	19	1.107539	3.826875	chr4	3927854	3930775	LTR|ERV1|HERVH-int	+	chr4	3915186	3924274	AC226119.2|ENST00000513501.1	-	3915186,3917820,3921623,3924070	3915272,3917901,3921782,3924274	0.842105
omental_fat_pad_female_adult_51_years	chr1	1655376	1655451	1655409	-	RAMPAGE_only	12	15	52	3.031161	5.343898	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.750000
omental_fat_pad_female_adult_51_years	chr10	122127024	122127025	122127024	+	High_confidence	60	61	80	4.663324	5.086302	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122217424	STRG.40319.10	+	122126713,122132608,122143571,122195039,122210396,122215390,122216626	122127142,122132734,122143706,122195176,122211708,122215451,122217424	0.875000
omental_fat_pad_female_adult_51_years	chr22	21940680	21940681	21940680	-	High_confidence	9	9	13	0.757790	3.084963	chr22	21940485	21940733	LTR|ERVL-MaLR|MLT1C	+	chr22	21931265	21940657	PPM1F|ENST00000445205.1	-	21931265,21933390,21934023,21939531,21940574	21931291,21933579,21934226,21939680,21940657	0.692308
omental_fat_pad_female_adult_51_years	chr1	171268995	171268996	171268995	+	RAMPAGE_only	8	8	10	0.582916	2.921928	chr1	171268815	171269160	LTR|ERVL-MaLR|THE1B	+	chr1	171275345	171283196	FMO1|ENST00000472893.1	+	171275345,171278728,171280785,171281977,171283143	171275508,171278871,171280985,171282065,171283196	0.600000
omental_fat_pad_female_adult_51_years	chr8	143558019	143558020	143558019	+	High_confidence	13	14	14	0.816082	3.026987	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.928571
omental_fat_pad_female_adult_51_years	chr10	119038237	119038238	119038237	-	RAMPAGE_only	5	7	7	0.408041	2.521641	chr10	119037907	119038207	SINE|Alu|AluSq2	-	chr10	119033669	119080804	EIF3A|ENST00000369144.7	-	119033669,119037118,119038237,119041993,119044053,119049800,119050520,119051198,119056739,119056935,119057955,119059211,119059601,119060745,119061223,119065398,119069445,119070885,119072889,119073440,119073746,119080627	119036268,119037309,119038439,119042772,119044142,119049985,119050674,119051321,119056853,119057040,119058303,119059397,119059718,119060844,119061328,119065570,119069654,119071085,119073053,119073577,119073937,119080804	1.000000
omental_fat_pad_female_adult_51_years	chr7	80594484	80594505	80594497	+	RAMPAGE_only	4	4	18	1.049248	3.263933	chr7	80594543	80594710	LINE|RTE-X|L4_C_Mam	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.555556
omental_fat_pad_female_adult_51_years	chr12	122274041	122274088	122274041	-	RAMPAGE_only	5	5	23	1.340706	3.261842	chr12	122273741	122274010	SINE|Alu|AluSz	-	chr12	122272460	122275823	CLIP1|ENST00000501271.2	-	122272460,122274037	122273100,122275823	1.000000
omental_fat_pad_female_adult_51_years	chr10	46269603	46269610	46269603	-	High_confidence	1	1	7	0.408041	2.584963	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.857143
omental_fat_pad_female_adult_51_years	chr9	127642428	127642452	127642428	+	High_confidence	11	12	29	1.690455	4.349192	chr9	127642433	127642559	LINE|CR1|L3	+	chr9	127642342	127663258	STXBP1|ENST00000626333.1	+	127642342,127651602,127653714,127658374,127660029,127661101,127663204	127642563,127651652,127653796,127658451,127660108,127661205,127663258	0.965517
omental_fat_pad_female_adult_51_years	chr22	32855393	32855394	32855393	+	RAMPAGE_only	11	11	16	0.932665	3.506891	chr22	32855433	32855631	SINE|MIR|MIR	+	chr22	32801700	32863043	TIMP3|ENST00000266085.6	+	32801700,32849451,32857248,32858016,32859179	32802122,32849534,32857360,32858138,32863043	0.875000
omental_fat_pad_female_adult_51_years	chr7	107580245	107580267	107580264	+	High_confidence	503	504	2577	150.217325	6.434141	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.961583
omental_fat_pad_female_adult_51_years	chr5	172888075	172888087	172888081	+	RAMPAGE_only	3	3	9	0.524624	2.947703	chr5	172888036	172888160	LINE|L2|L2a	-	chr5	172906059	172926563	ERGIC1|ENST00000519567.5	+	172906059,172909666,172914713,172924004,172926508	172906180,172909761,172914838,172924109,172926563	0.555556
omental_fat_pad_female_adult_51_years	chr14	101823652	101823653	101823652	+	High_confidence	7	7	8	0.466332	2.521641	chr14	101823598	101823757	SINE|MIR|MIRc	-	chr14	101823652	101856757	PPP2R5C|ENST00000556493.1	+	101823652,101824013,101856685	101823881,101824169,101856757	0.500000
omental_fat_pad_female_adult_51_years	chr12	15218720	15218728	15218727	-	High_confidence	4	4	8	0.466332	2.500000	chr12	15218438	15219229	LINE|CR1|L3	-	chr12	15107816	15218051	RERG|ENST00000536465.5	-	15107816,15111343,15121062,15217428,15217924	15109517,15111417,15121119,15217603,15218051	0.625000
omental_fat_pad_female_adult_51_years	chr19	40280810	40280832	40280831	-	High_confidence	6	6	10	0.582916	2.721928	chr19	40280545	40281038	LINE|L2|L2a	+	chr19	40242039	40280832	AKT2|ENST00000486368.6	-	40242039,40242533,40255157,40256925,40265221,40280781	40242069,40242687,40255269,40257054,40265351,40280832	0.900000
omental_fat_pad_female_adult_51_years	chr6	106541099	106541115	106541113	+	High_confidence	4	6	10	0.582916	2.503258	chr6	106541083	106541354	DNA|hAT-Charlie|MER102c	-	chr6	106541133	106555897	CRYBG1|ENST00000457437.1	+	106541133,106541585,106543439,106544570,106544787,106551851,106552183,106553454,106555767	106541295,106541621,106543597,106544697,106544933,106551978,106552216,106553567,106555897	0.900000
omental_fat_pad_female_adult_51_years	chr16	67183528	67183568	67183540	-	High_confidence	3	3	13	0.757790	3.251629	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.923077
omental_fat_pad_female_adult_51_years	chr6	136584491	136584495	136584491	-	High_confidence	4	4	12	0.699499	2.594907	chr6	136584318	136584690	LTR|ERVL-MaLR|THE1B	-	chr6	136580333	136584507	MAP3K5|ENST00000463140.1	-	136580333,136583554,136584401	136580406,136583740,136584507	0.666667
omental_fat_pad_female_adult_51_years	chr6	2990748	2990755	2990748	-	High_confidence	11	14	32	1.865330	3.646799	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989692	2990746	STRG.23294.1	-	2989692,2990670	2990011,2990746	0.843750
omental_fat_pad_female_adult_51_years	chr7	106269488	106269525	106269488	-	RAMPAGE_only	3	3	12	0.699499	2.845351	chr7	106269454	106269610	LINE|RTE-X|L4_B_Mam	+	chr7	106269154	106284632	NAMPT|ENST00000484527.5	-	106269154,106272529,106274945,106277022,106284347	106269312,106272658,106275049,106277179,106284632	0.666667
omental_fat_pad_female_adult_51_years	chr11	111097295	111097338	111097337	-	High_confidence	10	10	33	1.923621	4.502583	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.939394
omental_fat_pad_female_adult_51_years	chr3	29280865	29280899	29280865	-	High_confidence	4	4	31	1.807038	4.542748	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.645161
omental_fat_pad_female_adult_51_years	chr12	109266967	109267177	109266967	+	RAMPAGE_only	24	24	229	13.348765	5.594663	chr12	109266905	109267170	SINE|Alu|AluSx1	-	chr12	109139396	109268223	ACACB|ENST00000377848.7	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260479,109262356,109264231,109265109,109265388,109266235	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260657,109262469,109264386,109265280,109265525,109268223	0.995633
omental_fat_pad_female_adult_51_years	chr19	45450734	45450758	45450734	-	High_confidence	14	15	44	2.564828	4.860238	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45448691	45450725	STRG.61997.13	-	45448691	45450725	0.727273
omental_fat_pad_female_adult_51_years	chr2	202135838	202135839	202135838	+	High_confidence	12	13	18	1.049248	3.572469	chr2	202135840	202135976	SINE|MIR|MIRc	+	chr2	202135715	202197862	KIAA2012|ENST00000469462.1	+	202135715,202154672,202165283,202184752,202186932,202188151,202190173,202193300,202194189,202196799	202138508,202154810,202165356,202184843,202187098,202188266,202190493,202193503,202194362,202197862	0.944444
omental_fat_pad_female_adult_51_years	chr1	2594087	2594096	2594095	-	High_confidence	5	5	16	0.932665	2.739572	chr1	2593981	2594096	SINE|MIR|MIRb	-	chr1	2592654	2594073	MMEL1|ENST00000469962.1	-	2592654,2592832,2593813	2592720,2592966,2594073	0.562500
omental_fat_pad_female_adult_51_years	chr12	46400640	46400674	46400666	+	High_confidence	3	3	10	0.582916	2.947703	chr12	46400482	46400816	LINE|L2|L2-3_Crp	-	chr12	46400359	46402012	STRG.45434.1	+	46400359	46402012	0.800000
omental_fat_pad_female_adult_51_years	chr19	44914321	44914322	44914321	+	High_confidence	8	8	10	0.582916	2.921928	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.500000
omental_fat_pad_female_adult_51_years	chr17	4187108	4187109	4187108	-	High_confidence	9	9	9	0.524624	2.947703	chr17	4187012	4187196	LINE|L1|L1PB2	-	chr17	4183525	4187109	ANKFY1|ENST00000574736.1	-	4183525,4183811,4184817,4186893	4183551,4183910,4185046,4187109	1.000000
omental_fat_pad_female_adult_51_years	chr7	6590251	6590304	6590251	+	High_confidence	3	3	28	1.632163	4.324863	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	1.000000
omental_fat_pad_female_adult_51_years	chr16	68265978	68265983	68265982	+	High_confidence	4	4	8	0.466332	2.521641	chr16	68265978	68266277	SINE|Alu|AluYm1	+	chr16	68265515	68274798	SLC7A6|ENST00000562727.1	+	68265515,68266594,68274690	68265773,68266721,68274798	0.750000
omental_fat_pad_female_adult_51_years	chr19	49086520	49086547	49086520	+	High_confidence	5	5	15	0.874373	3.640224	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.800000
omental_fat_pad_female_adult_51_years	chr12	2798793	2798808	2798807	+	High_confidence	5	5	9	0.524624	2.750000	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.666667
omental_fat_pad_female_adult_51_years	chr10	103181328	103181329	103181328	-	High_confidence	21	21	21	1.224123	4.070656	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103169283	103181320	NT5C2|ENST00000467380.1	-	103169283,103174857,103181184	103169449,103174982,103181320	0.619048
omental_fat_pad_female_adult_51_years	chr9	104906000	104906025	104906000	-	RAMPAGE_only	30	30	80	4.663324	4.257535	chr9	104905864	104906087	SINE|MIR|MIRb	+	chr9	104861437	104928139	ABCA1|ENST00000374733.1	-	104861437,104883038,104884426,104889101,104927934	104861800,104883157,104884568,104889195,104928139	0.962500
omental_fat_pad_female_adult_51_years	chr4	28435559	28435578	28435577	+	High_confidence	4	6	17	0.990956	3.734522	chr4	28434217	28435950	LTR|ERV1|LTR49-int	+	chr4	28435448	28600275	AC097480.1|ENST00000509416.1	+	28435448,28476449,28577915,28600046	28435790,28476509,28577996,28600275	0.882353
omental_fat_pad_female_adult_51_years	chr12	15001837	15001855	15001838	+	High_confidence	5	7	13	0.757790	3.188722	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.769231
omental_fat_pad_female_adult_51_years	chr16	28538645	28538687	28538686	-	High_confidence	4	5	11	0.641207	3.121928	chr16	28538407	28538698	SINE|Alu|AluJo	+	chr16	28532707	28539174	NUPR1|ENST00000324873.7	-	28532707,28538005,28538795	28537669,28538155,28539174	0.818182
omental_fat_pad_female_adult_51_years	chr20	38985964	38985986	38985964	+	RAMPAGE_only	9	9	33	1.923621	4.476064	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	1.000000
omental_fat_pad_female_adult_51_years	chr3	188947224	188947237	188947236	+	High_confidence	16	18	44	2.564828	4.452444	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.886364
omental_fat_pad_female_adult_51_years	chr10	65570512	65570529	65570517	+	High_confidence	3	3	12	0.699499	3.584963	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.750000
omental_fat_pad_female_adult_51_years	chr20	18794063	18794086	18794085	+	High_confidence	15	15	43	2.506537	3.900087	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
omental_fat_pad_female_adult_51_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	5	5	7	0.408041	2.521641	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.571429
omental_fat_pad_female_adult_51_years	chr3	165817236	165817241	165817236	-	RAMPAGE_only	3	3	10	0.582916	3.321928	chr3	165816351	165817775	LINE|L2|L2a	+	chr3	165773078	165837420	BCHE|ENST00000479451.5	-	165773078,165786144,165837313	165773506,165786311,165837420	1.000000
omental_fat_pad_female_adult_51_years	chr3	197299316	197299317	197299316	-	High_confidence	5	5	7	0.408041	2.584963	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.714286
omental_fat_pad_female_adult_51_years	chr2	85376881	85376882	85376881	+	High_confidence	59	59	66	3.847242	5.167446	chr2	85376136	85377036	LINE|L1|L1MDa	-	chr2	85376881	85390995	ELMOD3|ENST00000496957.1	+	85376881,85377343,85389750,85390137,85390759	85376916,85377474,85389827,85390265,85390995	0.787879
omental_fat_pad_female_adult_51_years	chr10	72355119	72355146	72355145	-	High_confidence	7	7	19	1.107539	3.038562	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.947368
omental_fat_pad_female_adult_51_years	chr4	141332616	141332617	141332616	-	High_confidence	604	607	615	35.849304	4.866496	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.970732
omental_fat_pad_female_adult_51_years	chr21	14882004	14882005	14882004	-	High_confidence	29	30	34	1.981913	3.913910	chr21	14881808	14882178	LTR|ERVL-MaLR|MLT1A0	-	chr21	14852970	14881975	LINC02246|ENST00000418954.2	-	14852970,14857541,14881886	14853431,14857708,14881975	0.617647
omental_fat_pad_female_adult_51_years	chr6	28354199	28354206	28354205	-	High_confidence	4	5	8	0.466332	2.807355	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329449	28354204	ZSCAN31|ENST00000434036.5	-	28329449,28336789,28353861,28354130	28329714,28336943,28353952,28354204	0.500000
omental_fat_pad_female_adult_51_years	chr1	23854359	23854384	23854359	-	RAMPAGE_only	1	2	9	0.524624	3.000000	chr1	23854162	23854315	LINE|L1|L1ME3E	-	chr1	23845076	23868294	FUCA1|ENST00000374479.3	-	23845076,23846073,23848648,23854359,23859797,23863133,23865490,23867897	23845855,23846173,23848839,23854560,23859903,23863271,23865625,23868294	0.888889
omental_fat_pad_female_adult_51_years	chr9	116605987	116605990	116605987	-	RAMPAGE_only	12	12	22	1.282414	4.152391	chr9	116605863	116606013	SINE|MIR|MIR3	+	chr9	116425224	116687215	ASTN2|NM_198186.3	-	116425224,116440608,116442452,116487358,116618323,116620309,116651527,116686696	116426088,116440792,116442553,116487500,116618472,116620443,116651793,116687215	0.545455
omental_fat_pad_female_adult_51_years	chr11	7906253	7906287	7906253	-	High_confidence	21	21	34	1.981913	4.535849	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7905510	7906023	STRG.40880.2	-	7905510	7906023	0.911765
omental_fat_pad_female_adult_51_years	chr2	43486716	43486717	43486716	-	RAMPAGE_only	7	7	8	0.466332	2.807355	chr2	43486640	43486924	DNA|hAT-Charlie|MER102b	-	chr2	43344156	43463259	THADA|ENST00000485353.5	-	43344156,43397970,43428099,43430212,43463033	43344237,43398139,43428231,43430302,43463259	0.500000
omental_fat_pad_female_adult_51_years	chr10	98391170	98391171	98391170	-	RAMPAGE_only	4	4	7	0.408041	2.807355	chr10	98391143	98391387	LINE|L2|L2c	+	chr10	98383564	98411877	PYROXD2|ENST00000483923.5	-	98383564,98384946,98387200,98390597,98390870,98392431,98392941,98395195,98395390,98397344,98400101,98407581,98407903,98410612,98411174	98383868,98385067,98387307,98390754,98391082,98392566,98393083,98395293,98395452,98397498,98400257,98407655,98407997,98410958,98411877	0.857143
omental_fat_pad_female_adult_51_years	chr1	212792444	212792470	212792444	-	High_confidence	7	7	22	1.282414	4.021928	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.818182
omental_fat_pad_female_adult_51_years	chr4	184768328	184768420	184768328	-	RAMPAGE_only	15	15	114	6.645237	5.706105	chr4	184768056	184768306	SINE|MIR|MIRc	-	chr4	184755600	184766702	ACSL1|ENST00000503407.5	-	184755600,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621	184757265,184757706,184757920,184760500,184762493,184763255,184764925,184765986,184766702	0.736842
omental_fat_pad_female_adult_51_years	chr4	4269605	4269614	4269613	-	High_confidence	19	20	51	2.972869	3.196331	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.941176
omental_fat_pad_female_adult_51_years	chr10	79435761	79435786	79435785	-	RAMPAGE_only	2	2	6	0.349749	2.584963	chr10	79435626	79435755	SINE|MIR|MIR3	-	chr10	79386036	79444219	ZCCHC24|ENST00000372333.3	-	79386036,79394275,79432557,79444101	79386458,79394440,79432758,79444219	1.000000
omental_fat_pad_female_adult_51_years	chr5	32391036	32391040	32391036	-	High_confidence	6	6	12	0.699499	3.022055	chr5	32390905	32391003	DNA|hAT-Charlie|Charlie8	-	chr5	32355647	32390317	ZFR|ENST00000507465.1	-	32355647,32363947,32364163,32379114,32385507,32387548,32388468,32390274	32355939,32364045,32364275,32379210,32385649,32387699,32388674,32390317	0.750000
omental_fat_pad_female_adult_51_years	chr20	45833293	45833310	45833293	-	High_confidence	8	11	36	2.098496	3.953247	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.972222
omental_fat_pad_female_adult_51_years	chr1	184568398	184568424	184568408	+	High_confidence	53	53	123	7.169861	4.708636	chr1	184568204	184568449	LINE|L1|L1MB3	-	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.959350
omental_fat_pad_female_adult_51_years	chr7	154928480	154928504	154928503	+	High_confidence	23	25	39	2.273370	4.912273	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.871795
omental_fat_pad_female_adult_51_years	chr4	38816533	38816534	38816533	-	High_confidence	21	24	28	1.632163	4.396292	chr4	38816327	38816690	LTR|ERVL-MaLR|MSTA	-	chr4	38814717	38816795	STRG.17457.1	-	38814717	38816795	0.928571
omental_fat_pad_female_adult_51_years	chr3	180870551	180870563	180870551	-	High_confidence	6	6	11	0.641207	2.921928	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180750482	180870509	STRG.16113.2	-	180750482,180781983,180870046	180751410,180782124,180870509	0.727273
omental_fat_pad_female_adult_51_years	chr12	50930396	50930771	50930553	+	RAMPAGE_only	23	28	319	18.595005	6.357642	chr12	50930274	50930576	SINE|Alu|AluSq2	-	chr12	50924750	50932517	METTL7A|ENST00000332160.4	+	50924750,50929913	50925536,50932517	0.981191
omental_fat_pad_female_adult_51_years	chr1	12572757	12572760	12572757	-	RAMPAGE_only	4	4	12	0.699499	2.663533	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.916667
omental_fat_pad_female_adult_51_years	chr17	13931149	13931162	13931151	-	RAMPAGE_only	4	7	12	0.699499	2.845351	chr17	13931030	13931624	LTR|ERVL-MaLR|MLT1L	+	chr17	13776831	13892839	COX10-AS1|ENST00000577798.6	-	13776831,13790268,13865078,13880301,13892724	13777349,13790313,13865266,13880371,13892839	0.916667
omental_fat_pad_female_adult_51_years	chr12	66193761	66193762	66193761	+	RAMPAGE_only	15	15	15	0.874373	3.189898	chr12	66193312	66193908	LINE|L1|L1MC3	-	chr12	66189256	66254622	STRG.46128.4	+	66189256,66209455,66210146,66211445,66217170,66226722,66228251,66244485,66244947,66245097,66247694	66203893,66209520,66210201,66211597,66217235,66226837,66228370,66244684,66245010,66245262,66254622	1.000000
omental_fat_pad_female_adult_51_years	chr19	51027648	51027668	51027667	-	High_confidence	13	13	26	1.515580	4.053509	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.807692
omental_fat_pad_female_adult_51_years	chr20	44532608	44532614	44532608	+	High_confidence	4	4	8	0.466332	2.750000	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531915	44624247	PKIG|ENST00000372887.5	+	44531915,44582584,44589796,44614533,44623932	44531978,44582731,44589866,44614707,44624247	0.500000
omental_fat_pad_female_adult_51_years	chr3	139344535	139344548	139344535	+	High_confidence	3	3	10	0.582916	2.721928	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.900000
omental_fat_pad_female_adult_51_years	chr11	65429305	65429471	65429305	+	RAMPAGE_only	9	11	86	5.013073	4.147381	chr11	65428987	65429477	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.988372
omental_fat_pad_female_adult_51_years	chr16	81181330	81181341	81181330	-	High_confidence	63	64	127	7.403027	5.687238	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.921260
omental_fat_pad_female_adult_51_years	chr7	90154183	90154206	90154183	+	High_confidence	6	6	17	0.990956	3.452820	chr7	90154032	90154206	DNA|hAT-Charlie|MER5A	+	chr7	90154374	90164827	STEAP1|ENST00000297205.6	+	90154374,90159757,90160804,90161913,90164476	90154543,90159872,90161317,90162078,90164827	0.882353
omental_fat_pad_female_adult_51_years	chrX	53220886	53220893	53220886	-	RAMPAGE_only	4	4	9	0.524624	2.500000	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	0.888889
omental_fat_pad_female_adult_51_years	chr7	131108707	131108708	131108707	-	RAMPAGE_only	21	21	23	1.340706	3.594466	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944159	131109916	LINC-PINT|NR_109854.1	-	130944159,130945719,130984052,131052424,131107719,131109736	130944889,130945791,130984109,131052555,131108803,131109916	0.913043
omental_fat_pad_female_adult_51_years	chr15	65244454	65244455	65244454	-	RAMPAGE_only	14	16	19	1.107539	3.836592	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.894737
omental_fat_pad_female_adult_51_years	chr7	106269418	106269456	106269455	-	RAMPAGE_only	9	9	17	0.990956	3.454822	chr7	106269454	106269610	LINE|RTE-X|L4_B_Mam	+	chr7	106261500	106284921	NAMPT|ENST00000354289.8	-	106261500,106263391,106268463,106269153,106272529,106274945,106277022,106284827	106261707,106263617,106268600,106269312,106272658,106275049,106277179,106284921	0.529412
omental_fat_pad_female_adult_51_years	chr7	142862054	142862066	142862054	+	High_confidence	4	4	9	0.524624	2.750000	chr7	142861936	142862309	LTR|ERVL-MaLR|MLT1A0	-	chr7	142862034	142871087	STRG.30941.5	+	142862034,142862755,142863126,142863630,142863965,142865474,142865959,142866480,142866905,142867607,142867996,142868240,142868491,142868973,142869816,142870213,142870529,142870795	142862133,142862833,142863327,142863695,142864749,142865630,142866316,142866605,142867068,142867722,142868049,142868360,142868739,142869147,142869966,142870407,142870685,142871087	0.555556
omental_fat_pad_female_adult_51_years	chr2	191682530	191682576	191682575	+	High_confidence	3	3	11	0.641207	3.321928	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191683504	191690397	STRG.10532.12	+	191683504,191684229	191683804,191690397	0.545455
omental_fat_pad_female_adult_51_years	chr5	38881705	38881741	38881731	+	RAMPAGE_only	3	3	10	0.582916	3.169925	chr5	38881676	38881753	SINE|tRNA-Deu|AmnSINE2	+	chr5	38845998	38886739	OSMR|NM_001323504.1	+	38845998,38869031,38876200,38881592,38883826,38885348,38886038	38846387,38869117,38876373,38881764,38884111,38885484,38886739	0.700000
omental_fat_pad_female_adult_51_years	chr1	220788516	220788517	220788516	+	RAMPAGE_only	5	5	8	0.466332	2.521641	chr1	220788506	220788811	SINE|Alu|AluY	+	chr1	220786873	220819657	STRG.5488.6	+	220786873,220791490,220796642,220797873,220805051,220805202,220813291,220817580	220787219,220791664,220796805,220798014,220805113,220805274,220817516,220819657	0.875000
omental_fat_pad_female_adult_51_years	chr11	78525873	78525896	78525895	-	RAMPAGE_only	3	3	7	0.408041	2.521641	chr11	78525378	78526287	LINE|L1|L1MD3	+	chr11	78436732	78566267	NARS2|ENST00000525345.5	-	78436732,78441090,78443660,78465875,78469246,78478437,78478584,78528841,78559538,78566131	78436814,78441117,78443758,78466013,78469313,78478475,78478683,78528936,78559619,78566267	1.000000
omental_fat_pad_female_adult_51_years	chr8	17692225	17692226	17692225	-	High_confidence	4	4	6	0.349749	2.584963	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.666667
omental_fat_pad_female_adult_51_years	chr9	77945040	77945052	77945051	-	RAMPAGE_only	5	5	11	0.641207	3.027169	chr9	77944910	77945186	DNA|TcMar-Tigger|Tigger19b	+	chr9	77797527	78030604	GNAQ|ENST00000411677.1	-	77797527,77815615,77922160,78030514	77797648,77815770,77922345,78030604	0.727273
omental_fat_pad_female_adult_51_years	chr21	29077476	29077501	29077486	+	High_confidence	12	12	53	3.089452	4.445915	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.830189
omental_fat_pad_female_adult_51_years	chr19	10555125	10555148	10555125	-	RAMPAGE_only	3	3	7	0.408041	2.521641	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	1.000000
omental_fat_pad_female_adult_51_years	chr17	8413595	8413638	8413637	+	High_confidence	7	7	18	1.049248	3.454822	chr17	8413630	8413872	SINE|MIR|MIRc	+	chr17	8413194	8446884	NDEL1|ENST00000580237.5	+	8413194,8444259,8444623,8445710,8446753	8413269,8444357,8444742,8445864,8446884	0.722222
omental_fat_pad_female_adult_51_years	chr17	83049140	83049169	83049168	-	High_confidence	3	3	7	0.408041	2.521641	chr17	83049003	83049282	SINE|Alu|AluY	+	chr17	82943790	83049166	B3GNTL1|ENST00000576599.5	-	82943790,82946878,82956694,82957180,82957358,82961056,82965650,83005114,83005574,83014453,83035034,83048470,83048668	82944049,82946983,82956769,82957249,82957494,82961181,82965746,83005210,83005671,83014519,83035099,83048570,83049166	1.000000
omental_fat_pad_female_adult_51_years	chr11	117186006	117186023	117186006	+	High_confidence	3	3	17	0.990956	3.625000	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.764706
omental_fat_pad_female_adult_51_years	chr10	86974613	86974661	86974613	-	High_confidence	3	3	14	0.816082	3.334679	chr10	86974596	86974877	LINE|L1|L1M7	-	chr10	86973497	86973934	STRG.39453.1	-	86973497	86973934	0.714286
omental_fat_pad_female_adult_51_years	chr7	30561518	30561554	30561538	-	High_confidence	6	7	43	2.506537	4.350342	chr7	30561212	30561820	DNA|hAT?|MER99	+	chr7	30516974	30561516	GARS-DT|ENST00000578293.6	-	30516974,30524366,30550635,30551317,30552099,30561465	30517498,30524486,30550781,30551395,30552179,30561516	0.837209
omental_fat_pad_female_adult_51_years	chr12	643625	643636	643625	-	High_confidence	60	61	218	12.707558	5.674549	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.509174
omental_fat_pad_female_adult_51_years	chr1	161518031	161518154	161518031	+	RAMPAGE_only	5	7	44	2.564828	4.155818	chr1	161517820	161518039	LTR|ERV1|MER57-int	+	chr1	161514619	161518603	FCGR2A|ENST00000486608.1	+	161514619,161517974	161514874,161518603	0.954545
omental_fat_pad_female_adult_51_years	chr2	229232035	229232054	229232053	-	High_confidence	5	5	12	0.699499	3.277613	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.833333
omental_fat_pad_female_adult_51_years	chr17	82112977	82112978	82112977	-	RAMPAGE_only	5	5	7	0.408041	2.521641	chr17	82112484	82112971	LINE|L1|L1MEc	-	chr17	82111985	82152299	CCDC57|ENST00000392346.6	-	82111985,82127691,82128492,82134072,82151559	82113765,82127908,82128597,82134194,82152299	0.857143
omental_fat_pad_female_adult_51_years	chr16	55636702	55636703	55636702	+	RAMPAGE_only	8	8	8	0.466332	3.000000	chr16	55636498	55636760	SINE|Alu|AluSz	+	chr16	56632232	56633986	MT1M|ENST00000379818.3	+	56632232,56633339,56633750	56632759,56633405,56633986	1.000000
omental_fat_pad_female_adult_51_years	chr15	75347042	75347043	75347042	+	High_confidence	7	7	11	0.641207	3.095795	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.545455
omental_fat_pad_female_adult_51_years	chr11	58578102	58578133	58578123	-	High_confidence	12	14	64	3.730659	4.962738	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.703125
omental_fat_pad_female_adult_51_years	chr9	18702070	18702071	18702070	-	High_confidence	20	20	20	1.165831	3.984184	chr9	18701896	18702263	LTR|ERVL-MaLR|THE1B	-	chr9	18657032	18702053	STRG.34782.1	-	18657032,18670172,18694347,18701979	18657739,18670287,18694419,18702053	0.750000
omental_fat_pad_female_adult_51_years	chrX	48683362	48683363	48683362	+	High_confidence	26	36	36	2.098496	4.371178	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
omental_fat_pad_female_adult_51_years	chrX	120143500	120143501	120143500	+	High_confidence	48	48	50	2.914578	4.744035	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120143509	120146749	STRG.68477.1	+	120143509,120145637	120143900,120146749	0.960000
omental_fat_pad_female_adult_51_years	chr7	80369531	80369569	80369531	+	High_confidence	4	4	18	1.049248	3.794653	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.833333
omental_fat_pad_female_adult_51_years	chr1	12084235	12084237	12084236	+	High_confidence	6	10	15	0.874373	2.978095	chr1	12084124	12084342	LINE|L2|L2	-	chr1	12084246	12126395	STRG.369.1	+	12084246,12097100,12104378,12109565,12110040,12111897,12115576,12123283,12123714,12125950,12126182	12084551,12097217,12104531,12109656,12110204,12112014,12115729,12123377,12123827,12126052,12126395	0.800000
omental_fat_pad_female_adult_51_years	chr2	159940459	159940462	159940461	-	RAMPAGE_only	5	7	9	0.524624	2.725481	chr2	159940405	159940556	SINE|Alu|AluJo	-	chr2	159932005	160062610	PLA2R1|ENST00000283243.12	-	159932005,159942126,159944905,159946800,159947418,159949607,159951339,159955198,159955697,159956509,159967538,159969255,159970147,159976067,159976684,159977283,159979829,159983927,159987155,160005651,160013262,160016613,160020105,160022664,160028217,160028849,160032958,160042024,160044773,160062294	159941992,159942159,159945082,159946917,159947559,159949776,159951578,159955346,159955828,159956627,159967678,159969359,159970212,159976225,159976720,159977416,159979914,159984073,159987358,160005821,160013375,160016712,160020263,160022859,160028361,160028963,160033132,160042198,160045157,160062610	0.666667
omental_fat_pad_female_adult_51_years	chr16	68267936	68267937	68267936	+	RAMPAGE_only	33	33	34	1.981913	4.089552	chr16	68267617	68268452	LTR|ERVL|MER21B	+	chr16	68266601	68294747	STRG.55922.2	+	68266601,68273817,68274690,68287745,68290395,68291208,68291557,68294704	68266721,68273904,68275249,68287871,68290540,68291332,68291661,68294747	0.911765
omental_fat_pad_female_adult_51_years	chr1	36401262	36401276	36401265	+	RAMPAGE_only	5	5	14	0.816082	3.093069	chr1	36400550	36401780	LTR|ERV1|LTR2752	-	chr1	36405898	36435886	STRG.1253.1	+	36405898,36407379,36435818	36405938,36407504,36435886	0.571429
omental_fat_pad_female_adult_51_years	chr6	31587201	31587275	31587274	+	High_confidence	13	14	66	3.847242	4.749574	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	0.833333
omental_fat_pad_female_adult_51_years	chr7	106275932	106276097	106275952	-	RAMPAGE_only	15	19	162	9.443231	5.673316	chr7	106275752	106276050	SINE|Alu|AluSz	+	chr7	106275326	106284950	NAMPT|ENST00000489732.1	-	106275326,106284827	106277179,106284950	0.981481
omental_fat_pad_female_adult_51_years	chr15	51849064	51849065	51849064	+	RAMPAGE_only	4	4	6	0.349749	2.584963	chr15	51849039	51849166	LINE|L2|L2	-	chr15	51829629	51915725	TMOD3|ENST00000308580.11	+	51829629,51862810,51869216,51887588,51889055,51893814,51896418,51900154,51901891,51908775	51829836,51863010,51869373,51887711,51889145,51893945,51896526,51900298,51902036,51915725	0.833333
omental_fat_pad_female_adult_51_years	chr21	45370877	45370883	45370882	+	High_confidence	4	4	8	0.466332	2.521641	chr21	45370573	45371212	LTR|ERVL-MaLR|MLT1E2	+	chr21	45370632	45372488	STRG.65203.1	+	45370632,45371858	45371243,45372488	0.875000
omental_fat_pad_female_adult_51_years	chr13	40220473	40220500	40220473	-	RAMPAGE_only	3	3	12	0.699499	3.418296	chr13	40220406	40220578	SINE|MIR|MIR	-	chr13	40191653	40350653	STRG.48101.4	-	40191653,40217577,40343956,40350108	40194695,40217750,40344205,40350653	0.666667
omental_fat_pad_female_adult_51_years	chr5	138369945	138369956	138369945	+	RAMPAGE_only	2	2	6	0.349749	2.584963	chr5	138369795	138370010	SINE|MIR|MIRc	-	chr5	138372673	138437028	KDM3B|ENST00000510866.5	+	138372673,138375092,138377719,138379583,138381515,138386021,138386288,138391012,138393170,138398177,138399859,138415131,138417482,138418952,138420705,138424074,138425410,138426974,138427188,138427966,138429825,138430248,138431424,138435619	138372841,138375206,138377825,138379708,138381590,138386190,138386621,138392261,138393372,138398392,138400012,138415239,138417610,138419232,138420962,138424341,138425582,138427065,138427319,138428086,138429965,138430425,138431559,138437028	1.000000
omental_fat_pad_female_adult_51_years	chr2	102063688	102063726	102063688	+	High_confidence	10	12	24	1.398997	3.077324	chr2	102063576	102063690	SINE|MIR|MIR	-	chr2	102063367	102069556	STRG.8696.1	+	102063367	102069556	0.916667
omental_fat_pad_female_adult_51_years	chr2	86285659	86285669	86285668	-	RAMPAGE_only	4	4	15	0.874373	3.378783	chr2	86285416	86285647	SINE|MIR|MIR	-	chr2	86215318	86282232	REEP1|ENST00000644644.1	-	86215318,86219969,86227362,86232624,86240020,86251956,86254693,86263964,86282169	86217110,86220121,86227398,86232802,86240071,86252070,86254814,86264041,86282232	0.733333
omental_fat_pad_female_adult_51_years	chr2	3533934	3533935	3533934	-	High_confidence	9	9	11	0.641207	3.027169	chr2	3533849	3534784	LTR|ERV1|LTR27E	+	chr2	3531983	3533782	AC108488.1|ENST00000439547.5	-	3531983,3533107,3533710	3532310,3533190,3533782	1.000000
omental_fat_pad_female_adult_51_years	chr8	143281669	143281687	143281686	-	High_confidence	35	37	106	6.178904	5.590064	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281690	MINCR|ENST00000518073.1	-	143280827,143281481	143280997,143281690	0.547170
omental_fat_pad_female_adult_51_years	chr13	52236213	52236228	52236213	-	High_confidence	3	3	9	0.524624	2.750000	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.777778
omental_fat_pad_female_adult_51_years	chr19	1134588	1134612	1134609	-	RAMPAGE_only	5	6	15	0.874373	2.985228	chr19	1134434	1134765	LINE|L1|L1MB7	+	chr19	1107633	1132274	SBNO2|NM_001100122.1	-	1107633,1108778,1109134,1109291,1109505,1109682,1110744,1111018,1111505,1111995,1112188,1112401,1112817,1113534,1114230,1116020,1116828,1117322,1119010,1119515,1119905,1122138,1122467,1122657,1122893,1123533,1123941,1127603,1132089	1108704,1108969,1109211,1109423,1109598,1109777,1110888,1111093,1111614,1112067,1112301,1112537,1112949,1113704,1114422,1116103,1116926,1117499,1119164,1119621,1120023,1122282,1122558,1122791,1123045,1123639,1124022,1127765,1132274	0.666667
omental_fat_pad_female_adult_51_years	chr16	56683373	56683391	56683384	+	High_confidence	4	4	11	0.641207	2.921928	chr16	56683355	56683510	SINE|MIR|MIR3	-	chr16	56682469	56684196	MT1X|ENST00000568370.1	+	56682469	56684196	0.818182
omental_fat_pad_female_adult_51_years	chr14	103529030	103529095	103529030	-	High_confidence	4	4	25	1.457289	3.623465	chr14	103528849	103528983	SINE|Alu|AluJo	-	chr14	103525009	103529072	AL133367.1|ENST00000568177.1	-	103525009	103529072	0.840000
omental_fat_pad_female_adult_51_years	chr4	65024365	65024369	65024365	-	High_confidence	4	4	14	0.816082	3.392747	chr4	65024156	65024597	LTR|ERVL-MaLR|MSTB1	-	chr4	64914280	65024485	LINC02232|ENST00000509932.2	-	64914280,64926591,64937606,64939272,64939955,64977488,65004402,65008781,65024236	64917643,64926661,64937839,64939365,64940036,64977629,65004501,65008912,65024485	0.571429
omental_fat_pad_female_adult_51_years	chr12	53464774	53464784	53464774	+	RAMPAGE_only	2	2	7	0.408041	2.807355	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.714286
omental_fat_pad_female_adult_51_years	chr16	20674762	20674781	20674762	+	High_confidence	6	6	20	1.165831	3.787144	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.900000
omental_fat_pad_female_adult_51_years	chr9	20658312	20658349	20658338	+	High_confidence	13	14	71	4.138700	4.869916	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658314	20995948	STRG.34819.3	+	20658314,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	0.690141
omental_fat_pad_female_adult_51_years	chr1	179842996	179843022	179842996	-	RAMPAGE_only	5	5	13	0.757790	3.022055	chr1	179842762	179843070	SINE|Alu|AluY	+	chr1	179839966	179877782	STRG.4700.2	-	179839966,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877782	0.846154
omental_fat_pad_female_adult_51_years	chr5	172954093	172954131	172954093	+	RAMPAGE_only	6	7	18	1.049248	3.947703	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172952785	172969716	STRG.22854.16	+	172952785,172959864,172968458,172969412	172954336,172960041,172968599,172969716	1.000000
omental_fat_pad_female_adult_51_years	chr5	172954173	172954207	172954206	+	RAMPAGE_only	11	12	28	1.632163	3.719295	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172952785	172969716	STRG.22854.16	+	172952785,172959864,172968458,172969412	172954336,172960041,172968599,172969716	0.928571
omental_fat_pad_female_adult_51_years	chr12	1059448	1059473	1059448	+	High_confidence	13	13	32	1.865330	4.438067	chr12	1058934	1060038	LINE|L1|L1P4	-	chr12	1058794	1141740	STRG.44241.6	+	1058794,1083163,1104749,1110191,1112214,1115865,1141619	1059499,1083580,1104824,1110347,1112298,1116033,1141740	0.968750
omental_fat_pad_female_adult_51_years	chr5	67646698	67646709	67646708	-	High_confidence	3	3	8	0.466332	2.807355	chr5	67646558	67646761	SINE|MIR|MIRc	-	chr5	67627151	67646889	STRG.20516.1	-	67627151,67634306,67636807,67646605	67633335,67634395,67636948,67646889	0.625000
omental_fat_pad_female_adult_51_years	chr9	20658589	20658608	20658607	+	High_confidence	4	6	18	1.049248	3.734522	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658314	20995948	STRG.34819.3	+	20658314,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	0.666667
omental_fat_pad_female_adult_51_years	chr4	65024448	65024464	65024461	-	High_confidence	22	23	68	3.963825	5.471664	chr4	65024156	65024597	LTR|ERVL-MaLR|MSTB1	-	chr4	64914280	65024485	LINC02232|ENST00000509932.2	-	64914280,64926591,64937606,64939272,64939955,64977488,65004402,65008781,65024236	64917643,64926661,64937839,64939365,64940036,64977629,65004501,65008912,65024485	0.647059
omental_fat_pad_female_adult_51_years	chr15	85750312	85750344	85750312	-	High_confidence	2	2	10	0.582916	2.725481	chr15	85750035	85750376	SINE|Alu|AluSz	+	chr15	85744108	85750281	AC021739.2|ENST00000558375.1	-	85744108,85748907,85750241	85744814,85749125,85750281	0.800000
omental_fat_pad_female_adult_51_years	chr5	176411455	176411459	176411458	-	RAMPAGE_only	18	22	33	1.923621	4.562500	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.818182
omental_fat_pad_female_adult_51_years	chr7	11253112	11253113	11253112	+	High_confidence	91	91	92	5.362823	5.798681	chr7	11252764	11253207	LTR|ERVL|LTR40b	-	chr7	11253112	11385678	AC004160.1|ENST00000421121.5	+	11253112,11379286,11383796	11253225,11379369,11385678	0.521739
omental_fat_pad_female_adult_51_years	chr3	114624940	114625007	114624984	-	High_confidence	42	44	295	17.196007	5.934100	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.820339
omental_fat_pad_female_adult_51_years	chr16	20674497	20674498	20674497	+	High_confidence	608	613	683	39.813129	6.083417	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.901903
omental_fat_pad_female_adult_51_years	chr5	172802860	172802861	172802860	+	High_confidence	209	217	229	13.348765	6.553943	chr5	172802673	172803064	LTR|ERVL-MaLR|MLT1B	+	chr5	172802587	172805338	STRG.22844.1	+	172802587	172805338	0.908297
omental_fat_pad_female_adult_51_years	chr19	34860643	34860671	34860643	-	High_confidence	3	5	18	1.049248	3.947703	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.500000
omental_fat_pad_female_adult_51_years	chr10	45000453	45000515	45000453	+	High_confidence	27	27	124	7.228152	5.767749	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.935484
omental_fat_pad_female_adult_51_years	chr11	130536163	130536164	130536163	+	RAMPAGE_only	9	9	9	0.524624	2.725481	chr11	130536065	130536778	LINE|L2|L2a	-	chr11	130553303	130558822	STRG.44066.1	+	130553303	130558822	0.888889
omental_fat_pad_female_adult_51_years	chr9	39809852	39809914	39809858	-	High_confidence	8	10	35	2.040204	4.514718	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803604	39810013	STRG.35265.2	-	39803604,39809485,39809730	39803859,39809615,39810013	0.742857
omental_fat_pad_female_adult_51_years	chr13	24968460	24968494	24968483	-	High_confidence	3	3	9	0.524624	2.947703	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24967241	24968455	TPTE2P1|ENST00000381871.3	-	24967241,24968205	24967453,24968455	0.555556
omental_fat_pad_female_adult_51_years	chrX	136175614	136175629	136175628	+	RAMPAGE_only	5	5	11	0.641207	3.095795	chrX	136175160	136175815	LINE|L1|L1ME4c	+	chrX	136169925	136211359	FHL1|ENST00000345434.7	+	136169925,136206406,136207015,136207791,136208454,136209242,136209870	136169980,136206588,136207190,136207961,136208641,136209442,136211359	0.818182
omental_fat_pad_female_adult_51_years	chr14	81427414	81427467	81427441	-	High_confidence	8	8	43	2.506537	4.171052	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	1.000000
omental_fat_pad_female_adult_51_years	chr14	77076182	77076194	77076193	-	High_confidence	36	40	122	7.111569	6.162393	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77073906	77076344	STRG.51035.3	-	77073906,77076104	77074598,77076344	0.737705
omental_fat_pad_female_adult_51_years	chr21	28090339	28090410	28090339	+	High_confidence	181	209	692	40.337753	4.589278	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.985549
omental_fat_pad_female_adult_51_years	chr2	241235121	241235135	241235121	-	RAMPAGE_only	7	7	19	1.107539	3.721612	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241230774	241236664	HDLBP|ENST00000470482.5	-	241230774,241233819,241235120,241235489,241236614	241230944,241233963,241235275,241235594,241236664	0.526316
omental_fat_pad_female_adult_51_years	chr16	53445773	53445781	53445780	+	High_confidence	6	7	22	1.282414	3.196155	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.863636
omental_fat_pad_female_adult_51_years	chr10	102449836	102449845	102449844	+	High_confidence	8	8	18	1.049248	3.794653	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449852	102456293	RPARP-AS1|ENST00000492465.2	+	102449852,102450186,102451398,102452089,102455336	102450022,102450360,102451555,102452187,102456293	0.944444
omental_fat_pad_female_adult_51_years	chr16	72014418	72014419	72014418	+	High_confidence	23	23	31	1.807038	4.168244	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.612903
omental_fat_pad_female_adult_51_years	chr10	89888929	89888930	89888929	+	RAMPAGE_only	15	16	18	1.049248	3.616875	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.555556
omental_fat_pad_female_adult_51_years	chr9	89479889	89479890	89479889	-	High_confidence	27	27	27	1.573872	3.717850	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89402924	89479890	SEMA4D|ENST00000540475.5	-	89402924,89405350,89455887,89479571	89403016,89405699,89455953,89479890	1.000000
omental_fat_pad_female_adult_51_years	chr11	64226142	64226180	64226158	-	High_confidence	58	58	309	18.012089	6.750365	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.977346
omental_fat_pad_female_adult_51_years	chr16	20674611	20674648	20674647	+	High_confidence	6	6	15	0.874373	3.373557	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	1.000000
omental_fat_pad_female_adult_51_years	chr4	122700441	122700442	122700441	+	High_confidence	423	424	472	27.513612	6.948549	chr4	122700197	122700669	LTR|ERVL|MER70A	+	chr4	122700451	122744943	STRG.18772.1	+	122700451,122732644,122741882	122706699,122732884,122744943	0.983051
omental_fat_pad_female_adult_51_years	chr1	116390216	116390290	116390280	+	RAMPAGE_only	6	6	38	2.215079	4.148956	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.921053
omental_fat_pad_female_adult_51_years	chr7	80594570	80594587	80594586	+	RAMPAGE_only	4	4	9	0.524624	2.750000	chr7	80594543	80594710	LINE|RTE-X|L4_C_Mam	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.555556
omental_fat_pad_female_adult_51_years	chrX	7147281	7147288	7147287	+	High_confidence	15	15	27	1.573872	3.939471	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147298	7354645	STRG.66645.2	+	7147298,7190883,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147606,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354645	0.888889
omental_fat_pad_female_adult_51_years	chr15	29872900	29872901	29872900	-	RAMPAGE_only	7	7	10	0.582916	2.725481	chr15	29872898	29873002	LINE|L2|L2c	-	chr15	29699366	29822503	TJP1|NM_003257.4	-	29699366,29704221,29705527,29708558,29710830,29716610,29718020,29718265,29719776,29720357,29726378,29726780,29727936,29732432,29732630,29733093,29734273,29737263,29741330,29742641,29761138,29761600,29762334,29766265,29772063,29773232,29800645,29822001	29701689,29704305,29705745,29709036,29711000,29716838,29718118,29719138,29720016,29720708,29726479,29726991,29728019,29732528,29732815,29733313,29734382,29737414,29741436,29742781,29761286,29761769,29762438,29766542,29772166,29773357,29800702,29822503	0.600000
omental_fat_pad_female_adult_51_years	chr1	89272843	89272883	89272843	-	High_confidence	10	10	111	6.470362	5.447866	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.954955
omental_fat_pad_female_adult_51_years	chr1	7913228	7913268	7913267	-	RAMPAGE_only	13	13	35	2.040204	4.629004	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.742857
omental_fat_pad_female_adult_51_years	chr17	19386313	19386346	19386333	-	High_confidence	5	8	21	1.224123	3.892407	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.857143
omental_fat_pad_female_adult_51_years	chr7	53811930	53811942	53811930	-	High_confidence	8	8	14	0.816082	3.238901	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.785714
omental_fat_pad_female_adult_51_years	chr11	122322365	122322392	122322391	-	RAMPAGE_only	3	4	8	0.466332	2.750000	chr11	122322142	122322989	LINE|L2|L2c	+	chr11	122089195	122309451	MIR100HG|ENST00000648734.1	-	122089195,122155550,122180335,122202763,122292283,122309249	122091719,122155632,122180398,122202909,122292403,122309451	0.875000
omental_fat_pad_female_adult_51_years	chrX	5726311	5726326	5726324	-	High_confidence	216	234	349	20.343751	5.736195	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.905444
omental_fat_pad_female_adult_51_years	chr7	30756534	30756549	30756548	+	RAMPAGE_only	12	14	37	2.156787	4.270132	chr7	30756402	30756705	SINE|Alu|AluYg6	-	chr7	30752134	30757602	INMT|NM_001199219.1	+	30752134,30753733,30755421	30752304,30753938,30757602	1.000000
omental_fat_pad_female_adult_51_years	chr2	227714967	227714974	227714967	-	High_confidence	2	2	6	0.349749	2.584963	chr2	227714802	227715119	SINE|Alu|AluSx1	-	chr2	227685870	227714612	SLC19A3|ENST00000258403.8	-	227685870,227688165,227695888,227698735,227702168,227714448	227687573,227688307,227696081,227699564,227702320,227714612	1.000000
omental_fat_pad_female_adult_51_years	chr16	19487898	19487901	19487898	-	High_confidence	3	4	7	0.408041	2.521641	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.857143
omental_fat_pad_female_adult_51_years	chr2	46487765	46487771	46487765	-	High_confidence	111	111	203	11.833185	4.805759	chr2	46487527	46487891	LTR|ERVL-MaLR|MLT1J	-	chr2	46484581	46487561	STRG.7371.1	-	46484581	46487561	0.783251
omental_fat_pad_female_adult_51_years	chr7	104941027	104941057	104941027	+	High_confidence	7	7	22	1.282414	3.077573	chr7	104939974	104941430	LTR|ERV1|LTR12C	+	chr7	104941062	104962060	AC007384.1|ENST00000415513.1	+	104941062,104961983	104941670,104962060	0.909091
omental_fat_pad_female_adult_51_years	chrX	5726116	5726194	5726193	-	High_confidence	62	62	175	10.201021	5.518357	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5719297	5726358	STRG.66607.1	-	5719297,5725929	5719872,5726358	0.845714
omental_fat_pad_female_adult_51_years	chr2	223944060	223944081	223944080	+	High_confidence	4	4	8	0.466332	2.807355	chr2	223944006	223944148	DNA|hAT-Charlie|MER113	+	chr2	223944097	223967714	STRG.11482.3	+	223944097,223959533,223963755,223966862	223951279,223960002,223963934,223967714	0.875000
omental_fat_pad_female_adult_51_years	chr4	79086177	79086178	79086177	+	High_confidence	6	6	7	0.408041	2.584963	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.571429
omental_fat_pad_female_adult_51_years	chr6	158631146	158631147	158631146	+	RAMPAGE_only	4	4	6	0.349749	2.584963	chr6	158631108	158631267	SINE|MIR|MIRc	-	chr6	158625640	158635424	STRG.26953.5	+	158625640,158629729,158631322,158631809	158628490,158629819,158631389,158635424	0.833333
omental_fat_pad_female_adult_51_years	chr8	102930390	102930437	102930415	+	High_confidence	18	18	66	3.847242	5.476064	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	103002430	STRG.33535.1	+	102930181,102937623,102941920,102977586,103000008	102930518,102937757,102942053,102978955,103002430	0.712121
omental_fat_pad_female_adult_51_years	chr22	42644615	42644626	42644615	-	High_confidence	5	5	10	0.582916	3.121928	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	1.000000
omental_fat_pad_female_adult_51_years	chr9	129698737	129698760	129698743	+	RAMPAGE_only	7	7	29	1.690455	4.202134	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	0.965517
omental_fat_pad_female_adult_51_years	chr15	42491515	42491548	42491547	-	High_confidence	4	5	15	0.874373	2.521641	chr15	42491490	42491729	SINE|MIR|MIRb	+	chr15	42412436	42491197	ZNF106|NM_001284307.1	-	42412436,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42466052,42472235,42490979	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42466114,42472321,42491197	0.800000
omental_fat_pad_female_adult_51_years	chr2	200588166	200588222	200588176	+	High_confidence	8	8	28	1.632163	4.066109	chr2	200587906	200588390	LINE|L2|L2a	-	chr2	200588173	200603297	AOX1|ENST00000454629.1	+	200588173,200593145,200595271,200597396,200599619,200602283,200603266	200588270,200593203,200595368,200597505,200599746,200602345,200603297	0.857143
omental_fat_pad_female_adult_51_years	chr2	28620070	28620071	28620070	+	High_confidence	7	7	9	0.524624	2.750000	chr2	28619941	28620136	LINE|L2|L2a	-	chr2	28620671	28630664	PLB1|ENST00000473272.1	+	28620671,28625056,28626427,28628562,28629093,28630585	28620978,28625108,28626508,28628628,28629185,28630664	0.666667
omental_fat_pad_female_adult_51_years	chr19	48868595	48868617	48868613	-	High_confidence	413	457	1884	109.821281	7.703792	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.987261
omental_fat_pad_female_adult_53_years	chr4	99361475	99361502	99361501	-	RAMPAGE_only	49	50	73	6.088112	3.895578	chr4	99361269	99361501	SINE|MIR|MIR	-	chr4	99336491	99353045	ADH1C|NM_000669.4	-	99336491,99339576,99340574,99342794,99344861,99345178,99347005,99347744,99352657	99336776,99339715,99340710,99343055,99345081,99345266,99347144,99347846,99353045	0.808219
omental_fat_pad_female_adult_53_years	chr5	180830989	180831032	180831031	+	High_confidence	10	10	48	4.003142	4.969274	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831026	180834779	LINC00847|ENST00000508309.1	+	180831026,180834311	180831229,180834779	0.937500
omental_fat_pad_female_adult_53_years	chr11	119046603	119046643	119046603	-	RAMPAGE_only	4	4	10	0.833988	2.947703	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.900000
omental_fat_pad_female_adult_53_years	chr17	1330390	1330391	1330390	+	High_confidence	6	6	8	0.667190	3.000000	chr17	1330422	1330722	SINE|Alu|AluSx1	+	chr17	1330247	1334129	STRG.49352.1	+	1330247,1331744,1332888	1330740,1331893,1334129	0.750000
omental_fat_pad_female_adult_53_years	chr10	93431450	93431489	93431468	-	RAMPAGE_only	5	5	20	1.667976	3.260828	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.950000
omental_fat_pad_female_adult_53_years	chr4	4269609	4269614	4269609	-	High_confidence	21	21	53	4.420136	3.199066	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.962264
omental_fat_pad_female_adult_53_years	chr8	11864408	11864445	11864444	-	RAMPAGE_only	6	6	12	1.000786	2.855389	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.583333
omental_fat_pad_female_adult_53_years	chr18	35467058	35467081	35467080	-	High_confidence	4	6	13	1.084184	3.085055	chr18	35467057	35467118	DNA|hAT-Charlie|MER5A	-	chr18	35445742	35467081	AC007998.3|ENST00000591141.1	-	35445742,35446874,35466623	35445900,35446955,35467081	0.615385
omental_fat_pad_female_adult_53_years	chr3	14047205	14047210	14047205	-	High_confidence	20	23	37	3.085755	4.315623	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14038164	14047215	STRG.10956.1	-	14038164,14046812	14041628,14047215	0.810811
omental_fat_pad_female_adult_53_years	chr3	146222291	146222304	146222303	-	High_confidence	5	8	17	1.417780	3.750000	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146206586	146222371	PLSCR4|ENST00000498625.1	-	146206586,146220814,146222064	146206761,146220925,146222371	0.764706
omental_fat_pad_female_adult_53_years	chr14	73568526	73568534	73568533	-	RAMPAGE_only	6	6	17	1.417780	3.175123	chr14	73568374	73568576	SINE|Alu|AluJb	+	chr14	73567860	73570020	STRG.44919.1	-	73567860	73570020	0.941176
omental_fat_pad_female_adult_53_years	chr12	8681599	8681600	8681599	+	High_confidence	9	9	11	0.917387	2.921928	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.727273
omental_fat_pad_female_adult_53_years	chr9	13386132	13386133	13386132	+	RAMPAGE_only	23	25	31	2.585363	3.471159	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.935484
omental_fat_pad_female_adult_53_years	chr15	80059918	80059933	80059918	+	High_confidence	41	50	85	7.088898	5.003920	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.929412
omental_fat_pad_female_adult_53_years	chr3	56610860	56610861	56610860	+	RAMPAGE_only	9	9	12	1.000786	2.855389	chr3	56606748	56612100	LINE|L1|L1PBa1	-	chr3	56593711	56615417	CCDC66|ENST00000468108.1	+	56593711,56593943,56613588,56615127	56593741,56594028,56613750,56615417	0.750000
omental_fat_pad_female_adult_53_years	chr19	16877315	16877338	16877315	+	High_confidence	2	2	7	0.583792	2.521641	chr19	16877129	16877321	LTR|ERVL-MaLR|MLT1C	-	chr19	16877161	16878942	SIN3B|ENST00000594235.1	+	16877161,16877544,16878182,16878496	16877335,16877639,16878390,16878942	0.857143
omental_fat_pad_female_adult_53_years	chr15	62570690	62570724	62570723	+	RAMPAGE_only	5	6	19	1.584577	4.142664	chr15	62570617	62570828	DNA|hAT-Charlie|MER20	-	chr15	62561364	62844631	TLN2|ENST00000561311.5	+	62561364,62589686,62647274,62650083,62652004,62653161,62655943,62657770,62673826,62675216,62686640,62692839,62694315,62697687,62698753,62701105,62701991,62702765,62707085,62708501,62711910,62716330,62717575,62719766,62722352,62724975,62727086,62736877,62738213,62739347,62740629,62748350,62750401,62752304,62753772,62755531,62761680,62762271,62763562,62766320,62770963,62776763,62781139,62783770,62792640,62796126,62797218,62800367,62800652,62805599,62809924,62819515,62820485,62833503,62835736,62835890,62838855,62840481	62561482,62589762,62647446,62650181,62652134,62653314,62656086,62657898,62673890,62675321,62686796,62692941,62694392,62697868,62698867,62701214,62702200,62702864,62707253,62708796,62712077,62716459,62717689,62719880,62722487,62725104,62727189,62737086,62738333,62739545,62740769,62748444,62750491,62752427,62753916,62755693,62761821,62762453,62763695,62766422,62771134,62776910,62781241,62783890,62792787,62796293,62797402,62800493,62800769,62805785,62810032,62819621,62820610,62833629,62835799,62836073,62838981,62844631	0.526316
omental_fat_pad_female_adult_53_years	chr19	46350849	46350851	46350849	+	RAMPAGE_only	5	10	10	0.833988	2.646439	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	1.000000
omental_fat_pad_female_adult_53_years	chr17	82081606	82081839	82081606	-	RAMPAGE_only	20	20	87	7.255695	4.697608	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	1.000000
omental_fat_pad_female_adult_53_years	chr7	100082579	100082582	100082581	-	High_confidence	4	7	9	0.750589	2.503258	chr7	100082301	100082600	SINE|Alu|AluSx1	+	chr7	100069970	100082548	ZNF3|NM_001278287.1	-	100069970,100075134,100075541,100077302,100079535,100082300	100072212,100075261,100075630,100077433,100079572,100082548	0.555556
omental_fat_pad_female_adult_53_years	chr5	176715870	176715906	176715870	+	High_confidence	32	33	69	5.754517	3.688009	chr5	176715503	176715989	LINE|L1|HAL1	-	chr5	176715793	176722642	STRG.20410.1	+	176715793,176716833,176720742	176716548,176716951,176722642	0.985507
omental_fat_pad_female_adult_53_years	chr7	80524846	80524856	80524846	+	RAMPAGE_only	66	69	116	9.674260	5.174297	chr7	80524761	80524908	LTR|ERV1|LTR38B	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.810345
omental_fat_pad_female_adult_53_years	chrX	54998783	54998805	54998788	-	High_confidence	113	146	302	25.186436	5.776545	chrX	54998783	54998927	LINE|L1|L1ME4c	+	chrX	54933133	54998800	STRG.59179.2	-	54933133,54933820,54934946,54937594,54945438,54949074,54951904,54956152,54958305,54958850,54959826,54960823,54963256,54998405	54933462,54933885,54935009,54937724,54945543,54949221,54952112,54956274,54958362,54958925,54959893,54960917,54963382,54998800	0.844371
omental_fat_pad_female_adult_53_years	chr5	96979802	96979803	96979802	+	RAMPAGE_only	7	7	11	0.917387	2.594907	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	1.000000
omental_fat_pad_female_adult_53_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	32	35	73	6.088112	5.333210	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.821918
omental_fat_pad_female_adult_53_years	chr8	16186271	16186272	16186271	-	High_confidence	9	10	11	0.917387	2.846439	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.818182
omental_fat_pad_female_adult_53_years	chr12	79455442	79455469	79455442	-	High_confidence	4	4	12	1.000786	2.845351	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.833333
omental_fat_pad_female_adult_53_years	chr8	38825311	38825361	38825360	+	RAMPAGE_only	6	6	20	1.667976	4.121928	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	1.000000
omental_fat_pad_female_adult_53_years	chr9	121313981	121314021	121314002	+	RAMPAGE_only	72	72	248	20.682901	5.291835	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.975806
omental_fat_pad_female_adult_53_years	chr4	128570482	128570500	128570487	-	High_confidence	17	17	42	3.502749	4.334184	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.928571
omental_fat_pad_female_adult_53_years	chr16	8842153	8842179	8842153	+	High_confidence	12	12	32	2.668761	3.873236	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.937500
omental_fat_pad_female_adult_53_years	chr1	89272838	89272883	89272854	-	High_confidence	15	15	144	12.009426	5.202978	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.972222
omental_fat_pad_female_adult_53_years	chr1	219459173	219459179	219459173	-	High_confidence	17	17	41	3.419351	4.393899	chr1	219458918	219459231	SINE|Alu|AluSc8	+	chr1	219435152	219459369	AL513283.1|ENST00000640010.1	-	219435152,219437055,219458857	219435413,219437173,219459369	0.560976
omental_fat_pad_female_adult_53_years	chr14	95481761	95481766	95481765	-	RAMPAGE_only	7	7	18	1.501178	3.499228	chr14	95481614	95481737	LTR|ERVL|LTR33A_	-	chr14	95443660	95475836	SYNE3|ENST00000553340.1	-	95443660,95445908,95449930,95452246,95455376,95457176,95465930,95467794,95475677	95444628,95446091,95450105,95452383,95455724,95457338,95466240,95467967,95475836	0.888889
omental_fat_pad_female_adult_53_years	chr12	643625	643636	643627	-	High_confidence	40	86	148	12.343022	5.062967	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.939189
omental_fat_pad_female_adult_53_years	chr1	116390237	116390290	116390272	+	RAMPAGE_only	5	7	22	1.834773	3.111637	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
omental_fat_pad_female_adult_53_years	chr16	72073244	72073245	72073244	+	RAMPAGE_only	23	23	23	1.918172	2.905332	chr16	72072861	72073376	LTR|ERV1|LTR10B	+	chr16	72063228	72077246	HPR|ENST00000561690.1	+	72063228,72073891,72074283,72075144,72076302,72076955	72063260,72073977,72074385,72075219,72076350,72077246	0.652174
omental_fat_pad_female_adult_53_years	chr11	77175226	77175303	77175226	+	High_confidence	26	26	103	8.590076	5.274030	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.970874
omental_fat_pad_female_adult_53_years	chr19	9709659	9709660	9709659	+	High_confidence	13	13	16	1.334381	3.202820	chr19	9709309	9709779	LTR|ERV1|LTR10A	+	chr19	9709671	9721100	STRG.53078.1	+	9709671,9719542	9709992,9721100	1.000000
omental_fat_pad_female_adult_53_years	chr1	12315460	12315461	12315460	+	RAMPAGE_only	13	13	13	1.084184	2.623517	chr1	12315456	12315676	SINE|MIR|MIRb	-	chr1	12311525	12337988	VPS13D|ENST00000487188.1	+	12311525,12311812,12314114,12318071,12319496,12321808,12322535,12323705,12327647,12329828,12333225,12335704	12311625,12311925,12314327,12318337,12319630,12321964,12322746,12323780,12327854,12329918,12333366,12337988	0.846154
omental_fat_pad_female_adult_53_years	chr4	87524562	87524574	87524562	-	RAMPAGE_only	3	3	7	0.583792	2.584963	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87494416	87528619	SPARCL1|ENST00000535835.5	-	87494416,87494980,87499520,87504821,87528554	87494598,87495127,87499585,87504923,87528619	0.714286
omental_fat_pad_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	149	153	153	12.760016	4.838368	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.921569
omental_fat_pad_female_adult_53_years	chr1	161517991	161518050	161517991	+	RAMPAGE_only	3	3	26	2.168369	3.363713	chr1	161517820	161518039	LTR|ERV1|MER57-int	+	chr1	161514619	161518603	FCGR2A|ENST00000486608.1	+	161514619,161517974	161514874,161518603	0.961538
omental_fat_pad_female_adult_53_years	chr20	38985958	38985965	38985964	+	RAMPAGE_only	6	7	12	1.000786	3.277613	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.916667
omental_fat_pad_female_adult_53_years	chr6	31587009	31587014	31587013	+	High_confidence	6	6	12	1.000786	2.522055	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	1.000000
omental_fat_pad_female_adult_53_years	chr9	92536601	92536675	92536601	-	High_confidence	16	16	64	5.337523	5.381887	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.968750
omental_fat_pad_female_adult_53_years	chr9	63383654	63383655	63383654	-	RAMPAGE_only	4	4	7	0.583792	2.521641	chr9	63383594	63384104	LTR|ERVL|LTR53B	+	chr9	63299452	63385117	BMS1P10|ENST00000647845.1	-	63299452,63309141,63372802,63373320,63374382,63374871,63375612,63375917,63376182,63379122,63379939,63385078	63299620,63309312,63372978,63373468,63374505,63374969,63375671,63376098,63376371,63379294,63380009,63385117	1.000000
omental_fat_pad_female_adult_53_years	chr8	102929818	102929829	102929818	+	High_confidence	6	6	11	0.917387	2.845351	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.727273
omental_fat_pad_female_adult_53_years	chr22	37849317	37849333	37849317	-	High_confidence	14	15	36	3.002357	4.072431	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.972222
omental_fat_pad_female_adult_53_years	chr7	101217578	101217588	101217587	-	High_confidence	2	2	8	0.667190	2.521641	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.875000
omental_fat_pad_female_adult_53_years	chr19	49086520	49086547	49086546	+	High_confidence	12	12	24	2.001571	3.732159	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.541667
omental_fat_pad_female_adult_53_years	chr6	106541113	106541134	106541113	+	High_confidence	12	12	29	2.418565	3.297253	chr6	106541083	106541354	DNA|hAT-Charlie|MER102c	-	chr6	106541133	106555897	CRYBG1|ENST00000457437.1	+	106541133,106541585,106543439,106544570,106544787,106551851,106552183,106553454,106555767	106541295,106541621,106543597,106544697,106544933,106551978,106552216,106553567,106555897	0.965517
omental_fat_pad_female_adult_53_years	chr3	53168712	53168746	53168712	+	RAMPAGE_only	5	5	12	1.000786	2.550341	chr3	53168641	53169049	LINE|L2|L2b	-	chr3	53165128	53184973	PRKCD|ENST00000464818.1	+	53165128,53178403,53179576,53181206,53181443,53181700,53184873	53165215,53178537,53179776,53181267,53181606,53181732,53184973	0.916667
omental_fat_pad_female_adult_53_years	chr7	8212398	8212402	8212401	-	RAMPAGE_only	12	13	22	1.834773	3.499228	chr7	8212282	8212596	SINE|Alu|AluSz6	+	chr7	8113771	8213538	STRG.24455.4	-	8113771,8127872,8138839,8138984,8141764,8143874,8157115,8158526,8213438	8114044,8128142,8138881,8139047,8141817,8143972,8157214,8158652,8213538	0.681818
omental_fat_pad_female_adult_53_years	chr7	128450737	128450759	128450742	+	RAMPAGE_only	74	75	343	28.605786	7.064840	chr7	128450695	128451001	SINE|Alu|AluSz	-	chr7	128455936	128469171	STRG.27391.5	+	128455936,128457200,128460978,128466562,128468844	128456023,128460265,128463488,128466685,128469171	0.682216
omental_fat_pad_female_adult_53_years	chr21	28090339	28090391	28090339	+	High_confidence	85	99	411	34.276905	4.664632	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.931873
omental_fat_pad_female_adult_53_years	chr2	9422861	9422897	9422861	-	High_confidence	2	2	9	0.750589	2.725481	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NM_001319068.1	-	9405680,9407448,9408112,9412268,9414177,9418625,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9422660	1.000000
omental_fat_pad_female_adult_53_years	chr17	79030180	79030215	79030180	+	RAMPAGE_only	7	7	31	2.585363	3.922829	chr17	79030152	79030319	LINE|L1|L1ME4a	-	chr17	79034184	79048247	C1QTNF1|ENST00000581774.5	+	79034184,79043954,79046554,79047537	79034533,79044123,79046694,79048247	0.935484
omental_fat_pad_female_adult_53_years	chr12	105233207	105233221	105233219	-	High_confidence	27	34	61	5.087326	5.205087	chr12	105233175	105233274	LINE|L2|L2c	+	chr12	105177109	105233154	APPL2|ENST00000547809.5	-	105177109,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105233090	105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105233154	0.934426
omental_fat_pad_female_adult_53_years	chr12	53251611	53251624	53251617	+	High_confidence	6	7	20	1.667976	3.616349	chr12	53251547	53251701	SINE|MIR|MIRc	-	chr12	53251585	53254405	MFSD5|ENST00000534842.1	+	53251585,53252817	53252035,53254405	0.950000
omental_fat_pad_female_adult_53_years	chr2	110118141	110118147	110118146	-	RAMPAGE_only	7	9	14	1.167583	2.664498	chr2	110117625	110118184	LINE|L1|L1MD2	-	chr2	110083869	110116566	MALL|NM_005434.4	-	110083869,110087571,110091602,110115687	110085757,110087697,110091770,110116566	0.857143
omental_fat_pad_female_adult_53_years	chr9	1298267	1298288	1298287	+	High_confidence	45	48	167	13.927599	6.381716	chr9	1298301	1298444	SINE|MIR|MIRb	+	chr9	1298267	2039575	STRG.30454.3	+	1298267,1299313,1310939,1327073,1328424,1333146,1464142,1475564,1476508,1480854,1488983,1718866,2028986,2032951,2039465	1298431,1299412,1311032,1327173,1328587,1333196,1464233,1475628,1476656,1480970,1489095,1718912,2029247,2033081,2039575	0.670659
omental_fat_pad_female_adult_53_years	chr11	10367770	10367792	10367791	+	High_confidence	7	7	21	1.751375	3.136864	chr11	10367639	10368001	LTR|ERVL-MaLR|THE1B	+	chr11	10366923	10485021	STRG.35942.6	+	10366923,10410756,10461514,10478525,10482062,10484819	10367387,10410976,10461740,10478730,10482225,10485021	0.761905
omental_fat_pad_female_adult_53_years	chr12	15764153	15764159	15764158	-	RAMPAGE_only	357	434	742	61.881905	6.762388	chr12	15763995	15764357	LTR|ERVL-MaLR|THE1B	-	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.514825
omental_fat_pad_female_adult_53_years	chr5	180830482	180830483	180830482	+	High_confidence	8	8	8	0.667190	2.500000	chr5	180830359	180830506	LTR|ERVL-MaLR|MLT1D	+	chr5	180830493	180835678	STRG.20569.3	+	180830493,180834311	180830829,180835678	1.000000
omental_fat_pad_female_adult_53_years	chr3	180870516	180870552	180870518	-	High_confidence	6	9	15	1.250982	3.640224	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180781757	180870517	STRG.13919.2	-	180781757,180870046	180782124,180870517	0.733333
omental_fat_pad_female_adult_53_years	chr1	2594081	2594103	2594081	-	High_confidence	3	3	8	0.667190	2.750000	chr1	2593981	2594096	SINE|MIR|MIRb	-	chr1	2592654	2594073	MMEL1|ENST00000469962.1	-	2592654,2592832,2593813	2592720,2592966,2594073	0.875000
omental_fat_pad_female_adult_53_years	chr11	72135708	72135725	72135708	+	High_confidence	7	7	16	1.334381	3.106891	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	0.937500
omental_fat_pad_female_adult_53_years	chr12	93773408	93773412	93773411	+	RAMPAGE_only	15	17	25	2.084970	3.736441	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.720000
omental_fat_pad_female_adult_53_years	chr10	118322343	118322393	118322378	-	RAMPAGE_only	18	18	56	4.670332	4.608794	chr10	118322113	118322801	LINE|L1|L1MC4	+	chr10	118310635	118326349	FAM204A|ENST00000491416.5	-	118310635,118311206,118326153	118310908,118311313,118326349	0.678571
omental_fat_pad_female_adult_53_years	chr1	203372920	203373002	203372944	+	High_confidence	11	13	69	5.754517	4.588698	chr1	203372836	203373024	LTR|ERVL-MaLR|MLT1J2	+	chr1	203372928	203396394	STRG.4336.1	+	203372928,203374577,203375209,203378646,203379902,203395992	203373112,203374729,203375413,203378785,203380070,203396394	0.637681
omental_fat_pad_female_adult_53_years	chr12	7502480	7502523	7502517	-	High_confidence	6	6	31	2.585363	4.280226	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.935484
omental_fat_pad_female_adult_53_years	chr12	883795	883830	883829	+	RAMPAGE_only	6	8	22	1.834773	3.606937	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	862173	907956	STRG.38745.4	+	862173,878211,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846	862270,878361,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,907956	1.000000
omental_fat_pad_female_adult_53_years	chrX	48683361	48683363	48683362	+	High_confidence	27	43	43	3.586148	3.330610	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
omental_fat_pad_female_adult_53_years	chr3	153553356	153553406	153553405	-	High_confidence	8	8	23	1.918172	4.349649	chr3	153553066	153553660	DNA|TcMar-Tigger|MER6A	-	chr3	153383703	153553480	STRG.13407.1	-	153383703,153385867,153534542,153553325	153385390,153386016,153534663,153553480	0.565217
omental_fat_pad_female_adult_53_years	chr3	153553444	153553449	153553444	-	High_confidence	7	7	12	1.000786	2.732159	chr3	153553066	153553660	DNA|TcMar-Tigger|MER6A	-	chr3	153383703	153553480	STRG.13407.1	-	153383703,153385867,153534542,153553325	153385390,153386016,153534663,153553480	0.666667
omental_fat_pad_female_adult_53_years	chr13	40350339	40350446	40350410	-	RAMPAGE_only	69	83	270	22.517674	6.481534	chr13	40350403	40350604	SINE|MIR|MIR3	+	chr13	40214691	40377403	STRG.42289.4	-	40214691,40343956,40350108,40377050	40217750,40344205,40350302,40377403	0.770370
omental_fat_pad_female_adult_53_years	chr16	2757789	2757815	2757814	+	High_confidence	3	3	14	1.167583	3.093069	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
omental_fat_pad_female_adult_53_years	chrX	103431536	103431545	103431536	+	High_confidence	9	9	15	1.250982	2.732915	chrX	103431274	103435037	LTR|ERV1|HERVH-int	-	chrX	103431549	103436460	STRG.60171.6	+	103431549,103435940	103431918,103436460	0.866667
omental_fat_pad_female_adult_53_years	chr3	146222421	146222433	146222432	-	High_confidence	7	8	17	1.417780	2.983459	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146200008	146222433	PLSCR4|ENST00000481701.5	-	146200008,146201034,146206525,146220814,146222064,146222199	146200039,146201077,146206761,146220925,146222092,146222433	0.764706
omental_fat_pad_female_adult_53_years	chr5	173790892	173790942	173790892	-	High_confidence	4	6	29	2.418565	4.324863	chr5	173790732	173790899	DNA|hAT-Tip100|MER115	-	chr5	173786789	173790942	LINC01485|NR_108028.1	-	173786789,173787688,173790635,173790808	173787247,173787745,173790727,173790942	0.758621
omental_fat_pad_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	678	768	2161	180.224795	5.267690	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.968533
omental_fat_pad_female_adult_53_years	chr7	25839075	25839076	25839075	+	High_confidence	54	54	54	4.503535	5.002495	chr7	25838942	25839178	LTR|ERVL-MaLR|MLT1I	+	chr7	25839069	25848551	STRG.24904.1	+	25839069,25846727	25839353,25848551	0.907407
omental_fat_pad_female_adult_53_years	chr11	128565265	128565323	128565296	+	High_confidence	4	4	29	2.418565	4.021268	chr11	128565090	128565469	LTR|ERVL-MaLR|MLT1A1	+	chr11	128565259	128583050	STRG.38596.1	+	128565259,128565820,128582996	128565391,128566456,128583050	0.931034
omental_fat_pad_female_adult_53_years	chr12	109262430	109262468	109262467	+	High_confidence	5	7	21	1.751375	3.141619	chr12	109262492	109262615	DNA|hAT-Tip100|MamRep4096	+	chr12	109263021	109266941	ACACB|ENST00000537279.1	+	109263021,109265109,109265388,109266235	109264386,109265280,109265525,109266941	1.000000
omental_fat_pad_female_adult_53_years	chr11	123060124	123060256	123060255	-	High_confidence	21	21	179	14.928384	5.060322	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	0.994413
omental_fat_pad_female_adult_53_years	chr4	102431244	102431260	102431244	-	High_confidence	6	6	23	1.918172	3.207707	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.565217
omental_fat_pad_female_adult_53_years	chr19	38376006	38376027	38376013	+	RAMPAGE_only	5	5	15	1.250982	3.128085	chr19	38375972	38376110	SINE|MIR|MIR	-	chr19	38374787	38383823	STRG.53985.1	+	38374787,38376159,38376351,38379239,38380898,38382116,38383252,38383378	38374961,38376232,38376454,38379405,38380999,38382228,38383299,38383823	0.933333
omental_fat_pad_female_adult_53_years	chr9	19126435	19126446	19126435	-	RAMPAGE_only	9	11	18	1.501178	3.292770	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19123234	19127476	PLIN2|ENST00000380465.7	-	19123234,19123564,19126113,19126396,19127418	19123476,19123647,19126309,19126448,19127476	0.500000
omental_fat_pad_female_adult_53_years	chr5	150118767	150118809	150118767	-	RAMPAGE_only	4	4	14	1.167583	2.549523	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	1.000000
omental_fat_pad_female_adult_53_years	chr9	20658312	20658339	20658312	+	High_confidence	18	18	56	4.670332	4.355851	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.785714
omental_fat_pad_female_adult_53_years	chr21	28048446	28048447	28048446	+	High_confidence	54	54	65	5.420922	3.979065	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.938462
omental_fat_pad_female_adult_53_years	chr9	89479889	89479890	89479889	-	High_confidence	58	58	59	4.920529	4.000692	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	0.983051
omental_fat_pad_female_adult_53_years	chr1	209651256	209651313	209651257	-	High_confidence	6	10	47	3.919743	4.724386	chr1	209651125	209651277	SINE|MIR|MIR3	+	chr1	209614869	209651334	LAMB3|NM_001017402.1	-	209614869,209616470,209617409,209617906,209618451,209622535,209622981,209623504,209623839,209625647,209626866,209627382,209628034,209629736,209630614,209632582,209633069,209634446,209637907,209638533,209649963,209650916	209615407,209616624,209617586,209618048,209618659,209622680,209623179,209623725,209624000,209626026,209626978,209627579,209628190,209629925,209630735,209632776,209633133,209634638,209637981,209638648,209650118,209651334	0.978723
omental_fat_pad_female_adult_53_years	chr5	115956591	115956709	115956675	+	High_confidence	292	312	2129	177.556033	6.970667	chr5	115956262	115957250	LINE|L2|L2b	-	chr5	115956543	115962337	STRG.19041.11	+	115956543,115958428	115956920,115962337	0.736496
omental_fat_pad_female_adult_53_years	chr7	11194708	11194737	11194708	+	RAMPAGE_only	39	40	64	5.337523	4.814038	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.859375
omental_fat_pad_female_adult_53_years	chr1	9239792	9239807	9239806	+	High_confidence	9	9	20	1.667976	3.681881	chr1	9239801	9239853	LINE|Penelope|Penelope1_Vert	+	chr1	9239843	9271337	H6PD|NM_001282587.1	+	9239843,9244924,9246965,9262058,9263508	9240018,9245561,9247083,9262328,9271337	0.900000
omental_fat_pad_female_adult_53_years	chr15	65244454	65244455	65244454	-	RAMPAGE_only	12	12	16	1.334381	3.106891	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.937500
omental_fat_pad_female_adult_53_years	chr21	29077464	29077487	29077486	+	High_confidence	12	14	32	2.668761	4.015320	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.718750
omental_fat_pad_female_adult_53_years	chr5	133089637	133089678	133089677	+	RAMPAGE_only	10	10	17	1.417780	2.984234	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.941176
omental_fat_pad_female_adult_53_years	chr11	117836274	117836298	117836274	+	High_confidence	6	6	24	2.001571	3.464235	chr11	117836254	117836523	SINE|Alu|AluJb	-	chr11	117836290	117838745	STRG.38319.1	+	117836290,117837167	117836502,117838745	0.958333
omental_fat_pad_female_adult_53_years	chr19	17776452	17776476	17776458	+	RAMPAGE_only	9	11	32	2.668761	3.913910	chr19	17776440	17776584	SINE|MIR|MIRb	+	chr19	17778440	17783172	FCHO1|ENST00000600058.5	+	17778440,17781230,17781451,17781711,17783016	17778884,17781343,17781539,17781820,17783172	0.500000
omental_fat_pad_female_adult_53_years	chr15	75347042	75347076	75347042	+	High_confidence	7	8	27	2.251767	3.869300	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347052	75349170	NEIL1|ENST00000568059.1	+	75347052,75347246,75348883	75347110,75347473,75349170	0.555556
omental_fat_pad_female_adult_53_years	chr3	191316493	191316530	191316529	-	High_confidence	4	4	12	1.000786	2.855389	chr3	191316223	191317555	LTR|ERV1|LTR12C	-	chr3	191277590	191316218	UTS2B|ENST00000463450.1	-	191277590,191278071,191282086,191316035	191277636,191278170,191282313,191316218	0.666667
omental_fat_pad_female_adult_53_years	chr12	116661543	116661544	116661543	+	High_confidence	11	15	15	1.250982	3.240224	chr12	116660542	116661920	LTR|ERV1|LTR12C	+	chr12	116661581	116698065	AC125603.2|ENST00000546835.1	+	116661581,116697854	116662246,116698065	1.000000
omental_fat_pad_female_adult_53_years	chr8	85378112	85378113	85378112	-	High_confidence	71	74	75	6.254910	3.992134	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.920000
omental_fat_pad_female_adult_53_years	chr1	242203529	242203576	242203570	+	High_confidence	11	11	44	3.669547	4.570354	chr1	242203418	242203822	LTR|ERVL-MaLR|MSTB	+	chr1	242203554	242210827	AL591686.1|ENST00000421878.2	+	242203554,242209217,242210368	242203743,242209335,242210827	0.772727
omental_fat_pad_female_adult_53_years	chr16	53445754	53445796	53445793	+	High_confidence	6	6	24	2.001571	3.288320	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.875000
omental_fat_pad_female_adult_53_years	chr7	132420849	132420850	132420849	+	High_confidence	9	12	12	1.000786	3.459432	chr7	132420669	132421022	LTR|ERVL-MaLR|THE1B	+	chr7	132420876	132424270	STRG.27481.1	+	132420876	132424270	0.583333
omental_fat_pad_female_adult_53_years	chr5	77088150	77088175	77088174	+	High_confidence	6	6	28	2.335166	3.967720	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088274	77131207	ZBED3-AS1|ENST00000504506.5	+	77088274,77089345,77098654,77105655,77118319,77131090	77088472,77089403,77098747,77105689,77118521,77131207	0.785714
omental_fat_pad_female_adult_53_years	chr19	3062922	3062983	3062922	-	High_confidence	24	24	72	6.004713	5.097300	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.944444
omental_fat_pad_female_adult_53_years	chr5	42175253	42175291	42175253	-	High_confidence	33	33	99	8.256481	5.188155	chr5	42175074	42175255	LTR|ERVL-MaLR|MSTC	-	chr5	42155989	42175279	STRG.17870.3	-	42155989,42159026,42175152	42157411,42159446,42175279	0.656566
omental_fat_pad_female_adult_53_years	chr13	40350596	40350597	40350596	-	RAMPAGE_only	9	9	12	1.000786	3.251629	chr13	40350403	40350604	SINE|MIR|MIR3	+	chr13	40214691	40377403	STRG.42289.4	-	40214691,40343956,40350108,40377050	40217750,40344205,40350302,40377403	0.666667
omental_fat_pad_female_adult_53_years	chr19	40281642	40281666	40281665	-	High_confidence	6	6	26	2.168369	2.666949	chr19	40281638	40281705	SINE|MIR|MIRc	+	chr19	40242039	40280832	AKT2|ENST00000486368.6	-	40242039,40242533,40255157,40256925,40265221,40280781	40242069,40242687,40255269,40257054,40265351,40280832	1.000000
omental_fat_pad_female_adult_53_years	chr19	51795150	51795187	51795162	+	High_confidence	10	10	49	4.086541	4.693905	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.959184
omental_fat_pad_female_adult_53_years	chrX	100646393	100646394	100646393	+	High_confidence	10	11	11	0.917387	3.121928	chrX	100646416	100646572	LINE|CR1|L3b	+	chrX	100646322	100666884	SRPX2|ENST00000638458.1	+	100646322,100650784,100662151,100664773,100665242,100665535,100666753	100646404,100650865,100662367,100664950,100665369,100665657,100666884	0.909091
omental_fat_pad_female_adult_53_years	chr20	3795750	3795837	3795788	+	High_confidence	16	17	86	7.172296	5.092913	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.953488
omental_fat_pad_female_adult_53_years	chr1	19344359	19344365	19344359	-	RAMPAGE_only	3	5	8	0.667190	2.500000	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.750000
omental_fat_pad_female_adult_53_years	chr14	102083165	102083267	102083165	-	RAMPAGE_only	5	5	54	4.503535	4.639354	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102082664	102086331	HSP90AA1|ENST00000554401.1	-	102082664,102083545,102083792,102084398,102084680,102085297,102086216	102083302,102083693,102083983,102084564,102084998,102085431,102086331	0.592593
omental_fat_pad_female_adult_53_years	chr11	3380960	3380961	3380960	+	High_confidence	28	29	29	2.418565	3.838804	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.793103
omental_fat_pad_female_adult_53_years	chr13	47991649	47991651	47991649	-	RAMPAGE_only	12	15	20	1.667976	2.965584	chr13	47990978	47991673	LINE|L2|L2a	+	chr13	47942780	48001020	SUCLA2|ENST00000642944.1	-	47942780,47948939,47949482,47954139,47954395,47968594,47973263,47988540,47988881,47996842,48000906	47943445,47949028,47949603,47954282,47954557,47968733,47973392,47988703,47988981,47997023,48001020	0.900000
omental_fat_pad_female_adult_53_years	chr1	97904654	97904660	97904654	-	RAMPAGE_only	9	9	15	1.250982	3.324863	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.733333
omental_fat_pad_female_adult_53_years	chr5	171400151	171400163	171400151	+	RAMPAGE_only	2	2	14	1.167583	2.815072	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171387828	171410884	NPM1|ENST00000351986.10	+	171387828,171390050,171391304,171391705,171392709,171392913,171400152,171405301,171407699,171410526	171388006,171390130,171391424,171391799,171392816,171392978,171400210,171405403,171407774,171410884	0.642857
omental_fat_pad_female_adult_53_years	chr19	34860575	34860576	34860575	-	High_confidence	10	10	10	0.833988	2.921928	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.800000
omental_fat_pad_female_adult_53_years	chr10	118322625	118322671	118322670	-	RAMPAGE_only	3	3	10	0.833988	2.721928	chr10	118322113	118322801	LINE|L1|L1MC4	+	chr10	118310635	118326349	FAM204A|ENST00000491416.5	-	118310635,118311206,118326153	118310908,118311313,118326349	1.000000
omental_fat_pad_female_adult_53_years	chr15	30624357	30624368	30624357	+	High_confidence	4	4	15	1.250982	2.789898	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	1.000000
omental_fat_pad_female_adult_53_years	chr14	81170392	81170414	81170392	-	High_confidence	4	4	16	1.334381	3.202820	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	1.000000
omental_fat_pad_female_adult_53_years	chr9	20658607	20658624	20658607	+	High_confidence	4	5	14	1.167583	2.753434	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.500000
omental_fat_pad_female_adult_53_years	chr5	142621153	142621194	142621153	-	High_confidence	4	4	10	0.833988	2.921928	chr5	142620934	142621256	LINE|L2|L2c	+	chr5	142592177	142621342	FGF1|ENST00000359370.10	-	142592177,142600701,142613958,142621296	142595484,142600805,142614161,142621342	0.700000
omental_fat_pad_female_adult_53_years	chr9	696329	696365	696329	+	RAMPAGE_only	2	2	10	0.833988	2.721928	chr9	696299	696580	LINE|L2|L2c	-	chr9	691614	746102	STRG.30377.7	+	691614,710803,730050,731157,732377,734747,738284,740791,742204,744490,745172	693786,713464,730248,731266,732617,734835,738504,740934,742405,744589,746102	0.500000
omental_fat_pad_female_adult_53_years	chr12	16353884	16353885	16353884	+	High_confidence	9189	9591	11966	997.949974	5.392867	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16353908	16363806	STRG.39540.13	+	16353908,16354230,16357604,16363794	16354038,16354378,16357699,16363806	0.825004
omental_fat_pad_female_adult_53_years	chr20	51526030	51526031	51526030	-	RAMPAGE_only	6	7	9	0.750589	2.500000	chr20	51525529	51526222	LINE|L2|L2b	+	chr20	51386956	51542719	NFATC2|NM_012340.4	-	51386956,51398642,51432066,51435187,51435705,51454547,51473979,51475457,51516783,51523080,51542369	51391451,51398730,51432756,51435314,51435761,51454688,51474152,51475660,51516955,51524110,51542719	0.888889
omental_fat_pad_female_adult_53_years	chr1	1655409	1655437	1655409	-	RAMPAGE_only	3	3	10	0.833988	2.721928	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.500000
omental_fat_pad_female_adult_53_years	chr9	696412	696422	696414	+	RAMPAGE_only	18	22	34	2.835559	3.798351	chr9	696299	696580	LINE|L2|L2c	-	chr9	691614	746102	STRG.30377.7	+	691614,710803,730050,731157,732377,734747,738284,740791,742204,744490,745172	693786,713464,730248,731266,732617,734835,738504,740934,742405,744589,746102	0.941176
omental_fat_pad_female_adult_53_years	chr11	90251203	90251205	90251203	+	High_confidence	4	8	8	0.667190	2.750000	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.875000
omental_fat_pad_female_adult_53_years	chr12	45292831	45292847	45292846	+	High_confidence	3	5	9	0.750589	2.750000	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.777778
omental_fat_pad_female_adult_53_years	chr5	41150829	41150860	41150845	-	High_confidence	22	37	82	6.838701	5.311837	chr5	41150606	41150900	SINE|Alu|AluSx4	+	chr5	41142233	41151137	STRG.17845.6	-	41142233,41149240,41149934,41150626	41143006,41149482,41150025,41151137	0.902439
omental_fat_pad_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	76	76	80	6.671904	4.675693	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.837500
omental_fat_pad_female_adult_53_years	chr11	60182550	60182573	60182556	-	High_confidence	6	8	20	1.667976	3.984184	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.850000
omental_fat_pad_female_adult_53_years	chr3	139344547	139344548	139344547	+	High_confidence	22	22	32	2.668761	3.453627	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.968750
omental_fat_pad_female_adult_53_years	chr6	2990740	2990749	2990740	-	RAMPAGE_only	7	7	14	1.167583	2.896292	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.928571
omental_fat_pad_female_adult_53_years	chr6	31587238	31587259	31587258	+	High_confidence	3	3	9	0.750589	3.169925	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587299	31588909	LST1|ENST00000396101.7	+	31587299,31587640,31588562	31587318,31587733,31588909	1.000000
omental_fat_pad_female_adult_53_years	chrX	5726193	5726325	5726324	-	High_confidence	156	163	295	24.602644	5.695309	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5719238	5726324	STRG.58543.1	-	5719238,5725929	5719872,5726324	0.962712
omental_fat_pad_female_adult_53_years	chr13	40377923	40377933	40377923	-	High_confidence	6	7	13	1.084184	2.931209	chr13	40377863	40377935	SINE|MIR|MIRc	+	chr13	40214691	40377403	STRG.42289.4	-	40214691,40343956,40350108,40377050	40217750,40344205,40350302,40377403	0.769231
omental_fat_pad_female_adult_53_years	chr17	8310227	8310255	8310240	+	High_confidence	13	16	45	3.752946	4.624752	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.755556
omental_fat_pad_female_adult_53_years	chr2	75613117	75613166	75613158	+	High_confidence	6	7	42	3.502749	4.002686	chr2	75612715	75613195	LTR|ERVL|LTR33A	-	chr2	75613147	75672177	STRG.7238.1	+	75613147,75613850,75647101,75652141,75652522,75654735,75655063	75613306,75614008,75647219,75652260,75652657,75654917,75672177	0.952381
omental_fat_pad_female_adult_53_years	chrX	100593611	100593659	100593611	+	High_confidence	8	8	34	2.835559	3.980169	chrX	100593595	100593649	LINE|CR1|L3	+	chrX	100593623	100600091	STRG.60000.2	+	100593623,100594260,100597503,100599015,100599507	100594035,100594362,100597657,100599182,100600091	0.970588
omental_fat_pad_female_adult_53_years	chr7	64999443	64999444	64999443	-	RAMPAGE_only	61	63	70	5.837916	5.345783	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64990808	65006653	ERV3-1|ENST00000394323.2	-	64990808,65006540	64993414,65006653	0.800000
omental_fat_pad_female_adult_53_years	chr5	180830305	180830330	180830329	+	High_confidence	4	4	10	0.833988	2.947703	chr5	180830359	180830506	LTR|ERVL-MaLR|MLT1D	+	chr5	180830493	180835678	STRG.20569.3	+	180830493,180834311	180830829,180835678	0.900000
omental_fat_pad_female_adult_53_years	chr17	632119	632120	632119	+	RAMPAGE_only	10	11	11	0.917387	2.594907	chr17	631967	632257	SINE|Alu|AluJr	+	chr17	1279662	1300987	TRARG1|ENST00000333813.3	+	1279662,1295490,1298250	1280388,1295623,1300987	1.000000
omental_fat_pad_female_adult_53_years	chr1	242001524	242001584	242001524	-	High_confidence	18	22	81	6.755302	4.825861	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	242001590	STRG.5090.1	-	241995489,241998513,241998775,241998950,242001308	241996385,241998620,241998831,241999026,242001590	0.925926
omental_fat_pad_female_adult_53_years	chr12	16259104	16259149	16259148	+	High_confidence	49	50	87	7.255695	4.941274	chr12	16259051	16259251	SINE|Alu|AluJb	-	chr12	16259102	16267194	STRG.39540.1	+	16259102,16262093	16259195,16267194	0.862069
omental_fat_pad_female_adult_53_years	chr5	42837668	42837679	42837678	-	RAMPAGE_only	10	10	16	1.334381	3.189898	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.937500
omental_fat_pad_female_adult_53_years	chr9	110489658	110489659	110489658	-	RAMPAGE_only	12	13	16	1.334381	3.056565	chr9	110489280	110489644	LTR|ERVL-MaLR|THE1B	-	chr9	110442478	110550054	SVEP1|ENST00000467821.1	-	110442478,110445836,110446899,110450058,110451288,110455589,110457255,110458470,110458951,110465864,110468939,110471363,110472158,110476203,110479634,110481241,110482360,110483585,110489649,110496814,110499040,110503037,110512925,110513947,110546114,110549848	110443720,110446038,110447057,110450260,110451402,110455703,110457352,110458562,110459113,110466026,110469101,110471597,110472323,110476315,110479756,110481436,110482492,110483693,110489779,110496933,110499238,110503217,110513105,110514106,110546291,110550054	0.562500
omental_fat_pad_female_adult_53_years	chr22	50670820	50670879	50670878	+	High_confidence	7	7	25	2.084970	4.133661	chr22	50670706	50671175	LINE|L2|L2b	-	chr22	50670808	50671215	STRG.58462.1	+	50670808	50671215	0.800000
omental_fat_pad_female_adult_53_years	chrX	7147275	7147288	7147287	+	High_confidence	13	13	20	1.667976	3.090033	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147298	7354740	STRG.58578.1	+	7147298,7190883,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147606,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354740	0.950000
omental_fat_pad_female_adult_53_years	chr22	38192097	38192151	38192097	-	High_confidence	14	16	59	4.920529	4.685538	chr22	38191851	38192921	LINE|L2|L2c	-	chr22	38140134	38192100	STRG.58107.12	-	38140134,38143104,38145437,38169217,38192032	38140169,38143288,38145653,38169471,38192100	0.813559
omental_fat_pad_female_adult_53_years	chr19	5680234	5680249	5680248	-	High_confidence	5	5	12	1.000786	2.918296	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
omental_fat_pad_female_adult_53_years	chr15	88635654	88635661	88635654	+	High_confidence	12	12	25	2.084970	3.783465	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.800000
omental_fat_pad_female_adult_53_years	chr4	79492585	79492596	79492585	+	High_confidence	8	10	24	2.001571	3.334209	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.916667
omental_fat_pad_female_adult_53_years	chr9	19445676	19445686	19445685	+	High_confidence	3	3	8	0.667190	2.750000	chr9	19445297	19446244	LINE|L2|L2a	-	chr9	19445363	19452020	STRG.30933.2	+	19445363,19450219,19450449	19446418,19450355,19452020	0.875000
omental_fat_pad_female_adult_53_years	chr13	112189074	112189162	112189094	+	High_confidence	20	23	152	12.676617	5.352435	chr13	112189136	112189519	LTR|ERVL-MaLR|MLT1L	+	chr13	112189064	112231581	STRG.43389.1	+	112189064,112211464,112225029	112189531,112211623,112231581	0.769737
omental_fat_pad_female_adult_53_years	chr16	29963532	29963561	29963560	+	High_confidence	10	11	16	1.334381	2.983459	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	1.000000
omental_fat_pad_female_adult_53_years	chr2	218287266	218287306	218287266	-	High_confidence	11	12	39	3.252553	4.560667	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.871795
omental_fat_pad_female_adult_53_years	chr7	37353636	37353674	37353636	-	High_confidence	7	7	22	1.834773	3.879664	chr7	37353223	37353900	LTR|ERV1|LTR12_	-	chr7	37244355	37353668	STRG.25375.5	-	37244355,37259180,37271831,37314849,37315919,37342612,37352312	37244391,37259350,37271882,37314922,37315960,37342763,37353668	1.000000
omental_fat_pad_female_adult_53_years	chr20	50267474	50267488	50267487	+	High_confidence	4	5	18	1.501178	3.197160	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.944444
omental_fat_pad_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	440	514	953	79.479051	4.935731	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.980063
omental_fat_pad_female_adult_53_years	chr15	93863036	93863088	93863065	+	High_confidence	13	13	43	3.586148	4.990105	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.511628
omental_fat_pad_female_adult_53_years	chr17	77127869	77127875	77127872	+	High_confidence	6	6	18	1.501178	3.350209	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.777778
omental_fat_pad_female_adult_53_years	chr14	95516120	95516123	95516120	+	High_confidence	5	7	11	0.917387	3.277613	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	1.000000
omental_fat_pad_female_adult_53_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	15	15	15	1.250982	3.006239	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.733333
omental_fat_pad_female_adult_53_years	chr3	114624940	114625007	114625006	-	High_confidence	25	30	123	10.258052	5.396102	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.626016
omental_fat_pad_female_adult_53_years	chr2	201115977	201116022	201115997	+	High_confidence	3	3	13	1.084184	3.392747	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.923077
omental_fat_pad_female_adult_53_years	chr9	111284874	111284875	111284874	-	High_confidence	39	41	52	4.336737	3.944210	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.807692
omental_fat_pad_female_adult_53_years	chr16	760794	760821	760819	+	High_confidence	10	15	23	1.918172	3.708132	chr16	760734	760840	SINE|MIR|MIRc	-	chr16	760766	768865	MSLN|ENST00000566549.5	+	760766,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766667,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	0.956522
omental_fat_pad_female_adult_53_years	chr7	6590236	6590293	6590236	+	High_confidence	5	5	18	1.501178	3.381580	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.944444
omental_fat_pad_female_adult_53_years	chr11	34089397	34089440	34089439	+	High_confidence	6	6	27	2.251767	3.950064	chr11	34089484	34089623	SINE|Alu|AluJr	+	chr11	34090025	34101151	CAPRIN1|ENST00000533657.5	+	34090025,34090528,34091905,34096478,34097195,34097697,34099302	34090289,34090678,34092056,34096673,34097296,34097761,34101151	0.962963
omental_fat_pad_female_adult_53_years	chr8	116648864	116648917	116648864	-	RAMPAGE_only	4	4	22	1.834773	3.784184	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.863636
omental_fat_pad_female_adult_53_years	chr3	189121346	189121347	189121346	+	RAMPAGE_only	4	5	7	0.583792	2.521641	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.714286
omental_fat_pad_female_adult_53_years	chr21	34512209	34512220	34512209	-	High_confidence	13	13	43	3.586148	4.589021	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.604651
omental_fat_pad_female_adult_53_years	chr11	114295531	114295554	114295531	+	High_confidence	4	4	17	1.417780	3.327820	chr11	114295416	114295728	SINE|Alu|AluY	-	chr11	114295812	114312516	NNMT|NM_006169.2	+	114295812,114297950,114312044	114296710,114298158,114312516	0.529412
omental_fat_pad_female_adult_53_years	chr1	196404228	196404273	196404272	-	High_confidence	22	28	80	6.671904	4.384506	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225778	196404278	STRG.4141.3	-	196225778,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404278	0.875000
omental_fat_pad_female_adult_53_years	chr14	102235451	102235481	102235458	-	High_confidence	33	34	71	5.921314	4.655590	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.901408
omental_fat_pad_female_adult_53_years	chr9	97575358	97575368	97575367	+	RAMPAGE_only	9	9	19	1.584577	2.965584	chr9	97574036	97575455	LTR|ERV1|LTR12C	+	chr9	97574340	97601748	STRG.32217.2	+	97574340,97591290,97599633	97575486,97591435,97601748	0.894737
omental_fat_pad_female_adult_53_years	chr14	20928338	20928339	20928338	-	RAMPAGE_only	6	8	8	0.667190	2.750000	chr14	20928214	20928534	LTR|ERVL|MER21C	-	chr14	20801227	20803278	RNASE1|ENST00000397967.4	-	20801227,20802796	20802093,20803278	1.000000
omental_fat_pad_female_adult_53_years	chr17	4736355	4736362	4736361	-	High_confidence	6	9	15	1.250982	2.866248	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	1.000000
omental_fat_pad_female_adult_53_years	chr13	30743872	30743906	30743879	+	RAMPAGE_only	18	18	83	6.922100	4.744266	chr13	30743467	30743894	LINE|L2|L2c	+	chr13	30735507	30764426	ALOX5AP|ENST00000380490.4	+	30735507,30744059,30752051,30755943,30763943	30735675,30744159,30752122,30756025,30764426	0.903614
omental_fat_pad_female_adult_53_years	chr1	204870075	204870095	204870094	+	High_confidence	6	6	17	1.417780	3.202820	chr1	204870144	204870213	LINE|CR1|Plat_L3	+	chr1	204870830	205018371	NFASC|ENST00000404076.5	+	204870830,204920631,204944225,204952010,204954187,204954828,204957655,204968248,204968797,204970615,204973275,204974178,204974656,204975270,204976670,204978967,204979361,204980369,204981797,204984026,204985909,204987417,204988632,204991291,205009556,205012796,205016307	204871053,204920740,204944406,204952116,204954384,204954951,204957826,204968360,204968982,204970747,204973419,204974290,204974823,204975418,204976795,204979069,204979559,204980440,204982020,204984142,204986114,204987540,204988806,204991306,205009688,205012866,205018371	0.823529
omental_fat_pad_female_adult_53_years	chr12	79455514	79455537	79455514	-	High_confidence	7	8	22	1.834773	4.106603	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.772727
omental_fat_pad_female_adult_53_years	chr3	52482654	52482675	52482654	+	RAMPAGE_only	4	4	15	1.250982	2.682589	chr3	52482568	52482694	DNA|TcMar-Tc2|Kanga1c	+	chr3	52455616	52493068	STRG.11826.3	+	52455616,52457842,52458661,52470858,52471813,52472302,52473733,52476446,52477573,52478096,52478448,52479748,52480183,52480878,52485777,52487195,52489335,52490074,52490704,52491351,52491871	52455734,52457926,52458844,52470907,52471977,52472398,52473829,52476599,52477642,52478282,52478577,52479862,52480295,52484637,52485827,52488605,52489678,52490231,52490833,52491513,52493068	0.933333
omental_fat_pad_female_adult_53_years	chr9	18702070	18702071	18702070	-	High_confidence	36	36	43	3.586148	4.582901	chr9	18701896	18702263	LTR|ERVL-MaLR|THE1B	-	chr9	18656793	18702057	STRG.30929.1	-	18656793,18670172,18694347,18701979	18657739,18670287,18694419,18702057	0.860465
omental_fat_pad_female_adult_53_years	chr5	38468316	38468485	38468484	-	High_confidence	469	496	1595	133.021077	6.779040	chr5	38468426	38468568	SINE|MIR|MIRc	-	chr5	38466162	38468339	AC010457.1|ENST00000510137.1	-	38466162,38468238	38466398,38468339	0.816928
omental_fat_pad_female_adult_53_years	chr11	64226142	64226180	64226158	-	High_confidence	56	58	296	24.686043	6.403622	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.989865
omental_fat_pad_female_adult_53_years	chr8	143558019	143558020	143558019	+	High_confidence	11	11	11	0.917387	3.095795	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.727273
omental_fat_pad_female_adult_53_years	chr11	86955969	86956015	86955969	-	High_confidence	5	5	30	2.501964	4.640224	chr11	86955862	86955972	SINE|MIR|MIRb	+	chr11	86945674	86955398	FZD4|NM_012193.3	-	86945674,86954800	86952470,86955398	0.700000
omental_fat_pad_female_adult_53_years	chr6	130978738	130978739	130978738	-	High_confidence	11	11	15	1.250982	3.106891	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.933333
omental_fat_pad_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	74	75	75	6.254910	3.742292	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.986667
omental_fat_pad_female_adult_53_years	chr12	1059428	1059449	1059448	+	RAMPAGE_only	16	16	26	2.168369	4.209867	chr12	1058934	1060038	LINE|L1|L1P4	-	chr12	1083140	1444589	ERC1|ENST00000538971.6	+	1083140,1104749,1110191,1115865,1141619,1180539,1181924,1183280,1189858,1204500,1236768,1289851,1371832,1408148,1410388,1444561	1083580,1104824,1110347,1116033,1141787,1180677,1182065,1183421,1190052,1204512,1236904,1290012,1371977,1408247,1410453,1444589	1.000000
omental_fat_pad_female_adult_53_years	chr7	107580245	107580267	107580264	+	High_confidence	441	443	2185	182.226366	6.357305	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.974828
omental_fat_pad_female_adult_53_years	chr9	68975842	68975855	68975842	-	High_confidence	14	14	59	4.920529	4.650931	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68971308	68975842	STRG.31609.1	-	68971308,68975663	68972641,68975842	0.559322
omental_fat_pad_female_adult_53_years	chr2	45192665	45192669	45192665	-	RAMPAGE_only	6	7	12	1.000786	2.688722	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	1.000000
omental_fat_pad_female_adult_53_years	chr6	63824847	63824850	63824847	-	RAMPAGE_only	3	5	7	0.583792	2.521641	chr6	63824473	63827562	LINE|L1|L1PBa1	+	chr6	63786002	63806240	EYS|ENST00000486069.1	-	63786002,63787118,63787266,63788104,63789057,63806189	63786201,63787169,63787371,63788249,63789224,63806240	0.571429
omental_fat_pad_female_adult_53_years	chr22	42644594	42644626	42644625	-	High_confidence	4	4	11	0.917387	2.913977	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	1.000000
omental_fat_pad_female_adult_53_years	chr9	125337360	125337376	125337375	+	RAMPAGE_only	3	3	8	0.667190	2.521641	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125302306	125342234	GAPVD1|ENST00000436712.2	+	125302306,125305062,125307412,125307690,125309928,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176,125342218	125302826,125305149,125307547,125307880,125310009,125312612,125321499,125323923,125326589,125330218,125332060,125332629,125337095,125337591,125341264,125342234	0.625000
omental_fat_pad_female_adult_53_years	chr2	240022172	240022184	240022172	-	RAMPAGE_only	10	10	24	2.001571	2.696779	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.958333
omental_fat_pad_female_adult_53_years	chr11	123061128	123061257	123061256	-	High_confidence	78	81	181	15.095182	5.723602	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.900552
omental_fat_pad_female_adult_53_years	chr1	209651135	209651174	209651135	-	High_confidence	6	6	18	1.501178	3.292770	chr1	209651125	209651277	SINE|MIR|MIR3	+	chr1	209614869	209651334	LAMB3|NM_001017402.1	-	209614869,209616470,209617409,209617906,209618451,209622535,209622981,209623504,209623839,209625647,209626866,209627382,209628034,209629736,209630614,209632582,209633069,209634446,209637907,209638533,209649963,209650916	209615407,209616624,209617586,209618048,209618659,209622680,209623179,209623725,209624000,209626026,209626978,209627579,209628190,209629925,209630735,209632776,209633133,209634638,209637981,209638648,209650118,209651334	0.888889
omental_fat_pad_female_adult_53_years	chr10	79435757	79435810	79435765	-	RAMPAGE_only	4	4	39	3.252553	4.283381	chr10	79435626	79435755	SINE|MIR|MIR3	-	chr10	79386036	79444219	ZCCHC24|ENST00000372333.3	-	79386036,79394275,79432557,79444101	79386458,79394440,79432758,79444219	0.948718
omental_fat_pad_female_adult_53_years	chr2	9422792	9422818	9422817	-	High_confidence	5	5	12	1.000786	2.663533	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NR_134951.1	-	9405680,9407448,9408112,9412268,9414177,9419989,9422478	9406905,9407598,9408205,9412405,9414256,9420100,9422660	0.583333
omental_fat_pad_female_adult_53_years	chr3	14047155	14047156	14047155	-	High_confidence	21	21	25	2.084970	3.555085	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14038164	14047215	STRG.10956.1	-	14038164,14046812	14041628,14047215	0.960000
omental_fat_pad_female_adult_53_years	chr3	134485443	134485496	134485443	-	High_confidence	5	5	35	2.918958	4.182907	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.514286
omental_fat_pad_female_adult_53_years	chr15	75713693	75713720	75713693	-	High_confidence	3	3	8	0.667190	2.521641	chr15	75713455	75713652	SINE|MIR|MIRc	-	chr15	75674321	75712848	CSPG4|NM_001897.4	-	75674321,75677702,75682292,75682606,75682842,75684735,75685218,75687275,75693069,75712667	75677384,75677886,75682459,75682741,75683041,75684912,75685701,75690812,75693233,75712848	0.625000
omental_fat_pad_female_adult_53_years	chr8	143281669	143281687	143281669	-	High_confidence	27	27	92	7.672689	5.034219	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280165	143281660	MINCR|ENST00000517411.1	-	143280165,143280881,143281481	143280515,143280997,143281660	0.630435
omental_fat_pad_female_adult_53_years	chr4	48012924	48012936	48012935	-	High_confidence	2	3	7	0.583792	2.584963	chr4	48012591	48013262	LTR|ERV1|MER4-int	-	chr4	47935976	48012944	CNGA1|NM_000087.3	-	47935976,47940762,47942040,47943180,47943370,47949832,47951352,47952582,47981392,48010793,48012888	47937829,47940869,47942148,47943288,47943412,47949895,47951469,47952703,47981500,48010893,48012944	0.714286
omental_fat_pad_female_adult_53_years	chr19	9140393	9140428	9140427	+	High_confidence	14	14	41	3.419351	4.271471	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.756098
omental_fat_pad_female_adult_53_years	chr1	160951451	160951492	160951451	-	High_confidence	6	7	27	2.251767	4.032303	chr1	160951407	160951550	LTR|ERVL|LTR40b	+	chr1	160945093	160951474	STRG.3551.4	-	160945093,160947928,160950045,160950552,160951042	160945292,160948032,160950166,160950711,160951474	0.962963
omental_fat_pad_female_adult_53_years	chr8	99892036	99892057	99892056	-	RAMPAGE_only	77	77	130	10.841843	4.670185	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.992308
omental_fat_pad_female_adult_53_years	chr2	3536845	3536885	3536845	-	High_confidence	2	2	8	0.667190	2.500000	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.750000
omental_fat_pad_female_adult_53_years	chr16	75306447	75306452	75306447	-	High_confidence	11	16	25	2.084970	3.675311	chr16	75306282	75306398	LINE|CR1|L3	-	chr16	75293697	75306545	CFDP1|ENST00000570103.5	-	75293697,75305023,75306386	75294042,75305182,75306545	0.760000
omental_fat_pad_female_adult_53_years	chr8	27977125	27977126	27977125	-	High_confidence	39	44	56	4.670332	5.319521	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977114	STRG.28596.3	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977114	0.821429
omental_fat_pad_female_adult_53_years	chr5	151669678	151669697	151669678	-	RAMPAGE_only	4	4	17	1.417780	3.219528	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.941176
omental_fat_pad_female_adult_53_years	chr10	45000453	45000515	45000503	+	High_confidence	32	32	165	13.760801	5.798110	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.969697
omental_fat_pad_female_adult_53_years	chr11	10367834	10367840	10367834	+	High_confidence	15	15	23	1.918172	3.621176	chr11	10367639	10368001	LTR|ERVL-MaLR|THE1B	+	chr11	10366923	10485021	STRG.35942.6	+	10366923,10410756,10461514,10478525,10482062,10484819	10367387,10410976,10461740,10478730,10482225,10485021	0.869565
omental_fat_pad_female_adult_53_years	chr12	8681676	8681677	8681676	+	High_confidence	42	42	54	4.503535	5.181846	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.703704
omental_fat_pad_female_adult_53_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	17	17	17	1.417780	3.852169	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
omental_fat_pad_female_adult_53_years	chr15	74174554	74174572	74174571	+	High_confidence	25	25	61	5.087326	4.052945	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	1.000000
omental_fat_pad_female_adult_53_years	chr1	99661168	99661187	99661186	-	High_confidence	39	39	62	5.170725	5.312673	chr1	99660982	99661272	DNA|TcMar-Mariner|MARNA	-	chr1	99598198	99661247	STRG.2389.2	-	99598198	99661247	0.709677
omental_fat_pad_female_adult_53_years	chr18	6926866	6926900	6926899	-	RAMPAGE_only	4	4	13	1.084184	2.918296	chr18	6926636	6926936	SINE|Alu|AluJb	+	chr18	6925477	6928572	LINC00668|ENST00000580197.5	-	6925477,6928119,6928436	6927584,6928219,6928572	0.692308
omental_fat_pad_female_adult_53_years	chr16	4239733	4239749	4239748	-	High_confidence	5	6	10	0.833988	2.947703	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.900000
omental_fat_pad_female_adult_53_years	chrX	5726096	5726129	5726116	-	High_confidence	21	23	78	6.505106	4.594140	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719238	5726324	STRG.58543.1	-	5719238,5725929	5719872,5726324	0.858974
omental_fat_pad_female_adult_53_years	chr6	28354199	28354206	28354199	-	High_confidence	4	4	12	1.000786	2.855389	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324736	28354195	ZSCAN31|ENST00000396838.6	-	28324736,28327382,28329302,28336789,28337755,28341745,28353861,28354130	28326854,28327533,28329714,28336943,28337893,28341792,28353952,28354195	0.833333
omental_fat_pad_female_adult_53_years	chr9	92559105	92559123	92559122	-	High_confidence	4	7	15	1.250982	2.923231	chr9	92557942	92559647	LINE|L1|L1PB1	-	chr9	92517687	92559099	STRG.31977.3	-	92517687,92522574,92535932,92536600,92559039	92517875,92522893,92535982,92536648,92559099	1.000000
omental_fat_pad_female_adult_53_years	chr7	155243670	155243720	155243719	-	RAMPAGE_only	5	5	13	1.084184	3.085055	chr7	155240897	155243674	LTR|ERVK|HERVK9-int	-	chr7	155238106	155252540	STRG.27939.2	-	155238106,155239490,155252292	155238833,155243716,155252540	1.000000
omental_fat_pad_female_adult_53_years	chr11	120815816	120815841	120815816	-	RAMPAGE_only	7	8	26	2.168369	3.443856	chr11	120815766	120815947	DNA|hAT-Charlie|Charlie15a	+	chr11	120811344	120819115	LOC105369532|NR_133008.1	-	120811344,120815331,120818960	120811478,120815459,120819115	0.769231
omental_fat_pad_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	2880	2967	8962	747.419996	7.555053	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.928141
omental_fat_pad_female_adult_53_years	chr9	97575039	97575040	97575039	+	High_confidence	92	95	102	8.506677	4.870854	chr9	97574036	97575455	LTR|ERV1|LTR12C	+	chr9	97574340	97601748	STRG.32217.2	+	97574340,97591290,97599633	97575486,97591435,97601748	0.970588
omental_fat_pad_female_adult_53_years	chr4	41359606	41359607	41359606	+	High_confidence	18	18	25	2.084970	2.787601	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	1.000000
omental_fat_pad_female_adult_53_years	chr11	90167960	90167961	90167960	+	High_confidence	22	22	22	1.834773	3.533771	chr11	90167016	90168370	LTR|ERV1|LTR12C	+	chr11	90167973	90192731	STRG.37686.1	+	90167973,90168928,90173823,90175971,90177852,90181619,90182915,90191557	90168491,90168992,90173915,90176062,90178117,90181701,90183008,90192731	1.000000
omental_fat_pad_female_adult_53_years	chr17	4143196	4143215	4143199	+	High_confidence	36	36	95	7.922885	5.189483	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	1.000000
omental_fat_pad_female_adult_53_years	chr11	123469381	123469403	123469402	+	RAMPAGE_only	9	9	17	1.417780	3.202820	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123480737	123594838	GRAMD1B|ENST00000633087.1	+	123480737,123577366,123584311,123594081,123594734	123480893,123577577,123584332,123594166,123594838	0.764706
omental_fat_pad_female_adult_53_years	chr19	11223347	11223352	11223351	-	RAMPAGE_only	42	42	65	5.420922	5.126964	chr19	11223304	11223458	LTR|ERVL-MaLR|MLT1J2	+	chr19	11199496	11236497	DOCK6|ENST00000587656.5	-	11199496,11200307,11200715,11200908,11201888,11202393,11202583,11204080,11204199,11208685,11208910,11211775,11211992,11213175,11214274,11214552,11215386,11215800,11216913,11217230,11221850,11222108,11222734,11222992,11227336,11228939,11232184,11233202,11235597,11236345	11199539,11200469,11200822,11201052,11202125,11202483,11202709,11204095,11204331,11208829,11209103,11211876,11212151,11213328,11214409,11214649,11215471,11215927,11217096,11217391,11222020,11222248,11222905,11223106,11227477,11229035,11232289,11233366,11235759,11236497	0.892308
omental_fat_pad_female_adult_53_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	48	52	66	5.504320	4.766730	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.818182
omental_fat_pad_female_adult_53_years	chr1	226182505	226182528	226182505	-	RAMPAGE_only	3	3	11	0.917387	2.663533	chr1	226182334	226182625	SINE|Alu|AluSz	+	chr1	226144678	226186722	ACBD3|NM_022735.3	-	226144678,226152334,226154646,226159183,226161530,226164788,226165858,226186389	226146821,226152619,226154833,226159358,226161689,226164929,226166000,226186722	0.909091
omental_fat_pad_female_adult_53_years	chrX	120143500	120143501	120143500	+	High_confidence	82	82	84	7.005499	4.827968	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120143511	120146847	STRG.60433.1	+	120143511,120145637	120143900,120146847	0.964286
omental_fat_pad_female_adult_53_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	14	14	14	1.167583	3.521641	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
omental_fat_pad_female_adult_53_years	chr11	117185994	117186023	117186006	+	High_confidence	5	5	15	1.250982	3.182006	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.733333
omental_fat_pad_female_adult_53_years	chr1	109983427	109983478	109983470	-	High_confidence	24	25	69	5.754517	4.832595	chr1	109983457	109983951	LTR|Gypsy?|LTR85b	+	chr1	109979134	109983468	STRG.2559.1	-	109979134,109981697,109983252	109979252,109981829,109983468	0.985507
omental_fat_pad_female_adult_53_years	chr2	36513735	36513757	36513735	+	High_confidence	3	3	14	1.167583	3.039149	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.714286
omental_fat_pad_female_adult_53_years	chr11	58578102	58578133	58578132	-	High_confidence	11	18	40	3.335952	4.398857	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.625000
omental_fat_pad_female_adult_53_years	chr7	74664472	74664477	74664476	+	RAMPAGE_only	10	14	21	1.751375	3.405822	chr7	74664429	74664732	SINE|Alu|AluSz	-	chr7	74658030	74717066	GTF2I|ENST00000443166.5	+	74658030,74689123,74690972,74698960,74700246,74700605,74705163,74706389,74711031,74716893	74658068,74689227,74691111,74699095,74700430,74700634,74705218,74706433,74711109,74717066	0.523810
omental_fat_pad_female_adult_53_years	chr2	229586860	229586927	229586885	-	High_confidence	7	7	32	2.668761	4.056565	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229357632	229587162	STRG.10129.1	-	229357632,229366872,229388264,229407231,229418107,229447315,229477139,229512782,229546946,229585857,229586693	229358651,229367119,229388396,229407345,229418230,229447540,229477253,229512936,229547092,229586024,229587162	0.906250
omental_fat_pad_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	24	24	24	2.001571	3.657268	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	1.000000
omental_fat_pad_female_adult_53_years	chr2	143070964	143070965	143070964	+	RAMPAGE_only	15	15	19	1.584577	3.350209	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143091361	143238352	ARHGAP15|ENST00000409869.5	+	143091361,143092156,143155476,143202133,143216383,143228580,143235945	143091422,143092258,143155655,143202202,143216445,143228668,143238352	0.684211
omental_fat_pad_female_adult_53_years	chr19	20423696	20423704	20423703	-	RAMPAGE_only	15	20	42	3.502749	3.688424	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.928571
omental_fat_pad_female_adult_53_years	chr3	16134355	16134411	16134406	-	RAMPAGE_only	20	20	72	6.004713	5.263200	chr3	16134044	16134571	LTR|ERVL-MaLR|MLT1G1	-	chr3	16130821	16136856	STRG.11036.2	-	16130821,16134222,16136614	16133712,16134354,16136856	0.666667
omental_fat_pad_female_adult_53_years	chr17	2975635	2975667	2975635	+	RAMPAGE_only	9	10	43	3.586148	4.367898	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.906977
omental_fat_pad_female_adult_53_years	chr3	135965673	135965749	135965723	+	High_confidence	12	18	61	5.087326	4.358660	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.983607
omental_fat_pad_female_adult_53_years	chr9	77822994	77823018	77822997	-	RAMPAGE_only	9	9	30	2.501964	3.311080	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77797527	78030604	GNAQ|ENST00000411677.1	-	77797527,77815615,77922160,78030514	77797648,77815770,77922345,78030604	0.733333
omental_fat_pad_female_adult_53_years	chr2	227534916	227534981	227534932	+	RAMPAGE_only	13	13	29	2.418565	3.840403	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.827586
omental_fat_pad_female_adult_53_years	chr4	158173024	158173048	158173024	-	High_confidence	42	45	63	5.254124	5.126333	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158130799	158173023	STRG.16979.4	-	158130799,158155610,158170465,158172872	158131012,158155825,158171599,158173023	0.968254
omental_fat_pad_female_adult_53_years	chr1	54277488	54277533	54277523	-	RAMPAGE_only	8	9	32	2.668761	4.179229	chr1	54277464	54277668	SINE|MIR|MIR1_Amn	+	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.718750
omental_fat_pad_female_adult_53_years	chr4	86453164	86453203	86453202	-	High_confidence	20	23	118	9.841058	5.613587	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.822034
omental_fat_pad_female_adult_53_years	chr7	134432378	134432443	134432378	-	High_confidence	3	3	13	1.084184	3.238901	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.769231
omental_fat_pad_female_adult_53_years	chr2	85376881	85376882	85376881	+	High_confidence	225	237	285	23.768656	6.659101	chr2	85376136	85377036	LINE|L1|L1MDa	-	chr2	85376881	85390995	ELMOD3|ENST00000496957.1	+	85376881,85377343,85389750,85390137,85390759	85376916,85377474,85389827,85390265,85390995	0.543860
omental_fat_pad_female_adult_53_years	chr1	30756580	30756625	30756624	-	RAMPAGE_only	3	3	10	0.833988	2.725481	chr1	30756372	30756636	SINE|MIR|MIR	-	chr1	30732468	30757820	LAPTM5|ENST00000294507.3	-	30732468,30735172,30737603,30738939,30739808,30741639,30742455,30757658	30733917,30735265,30737699,30739062,30739937,30741716,30742549,30757820	0.600000
omental_fat_pad_female_adult_53_years	chr7	112452400	112452437	112452416	+	High_confidence	3	5	18	1.501178	3.292770	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112477203	IFRD1|NM_001197079.1	+	112452057,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112452511,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112477203	0.944444
omental_fat_pad_female_adult_53_years	chr4	79493277	79493284	79493277	+	High_confidence	2	3	7	0.583792	2.521641	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.857143
omental_fat_pad_female_adult_53_years	chr10	62056930	62056931	62056930	+	RAMPAGE_only	56	56	62	5.170725	4.874885	chr10	62056749	62056941	DNA|hAT-Charlie|MER58A	+	chr10	62049210	62096948	ARID5B|NM_001244638.1	+	62049210,62050887,62057116,62059242,62069699,62085701,62090861	62049483,62051000,62057318,62059295,62069797,62085900,62096948	0.838710
omental_fat_pad_female_adult_53_years	chr8	143018394	143018440	143018400	-	High_confidence	6	8	29	2.418565	4.208966	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.724138
omental_fat_pad_female_adult_53_years	chr1	220785772	220785787	220785786	+	High_confidence	8	10	14	1.167583	3.235926	chr1	220785615	220786074	LTR|ERV1|MER31B	+	chr1	220786696	220814399	MARC1|NM_022746.3	+	220786696,220791490,220796642,220797873,220805051,220805202,220813291	220787219,220791664,220796805,220798014,220805113,220805274,220814399	0.857143
omental_fat_pad_female_adult_53_years	chr10	10911594	10911597	10911594	+	RAMPAGE_only	4	5	9	0.750589	2.500000	chr10	10911494	10911655	LTR|ERVL|LTR86B1	-	chr10	11005295	11336675	CELF2|NM_001025077.2	+	11005295,11165485,11217424,11249152,11257737,11266597,11270665,11275056,11288417,11314138,11321206,11325835,11328925	11005440,11165682,11217507,11249201,11257872,11266677,11270824,11275120,11288552,11314258,11321386,11325979,11336675	0.666667
omental_fat_pad_female_adult_53_years	chr17	39927951	39927952	39927951	-	High_confidence	6	6	9	0.750589	2.947703	chr17	39927855	39928002	SINE|MIR|MIRc	-	chr17	39921040	39927804	ORMDL3|NM_139280.3	-	39921040,39923111,39924029,39927483	39922685,39923263,39924225,39927804	0.666667
omental_fat_pad_female_adult_53_years	chr2	171231275	171231296	171231295	-	High_confidence	13	14	39	3.252553	4.438588	chr2	171231092	171231479	LTR|ERVL-MaLR|MLT1C	-	chr2	170990822	171231314	TLK1|NM_001136554.1	-	170990822,170996652,170997711,171006146,171006473,171006799,171006971,171011372,171014850,171028338,171046173,171049813,171050063,171053760,171055082,171056470,171058150,171061080,171082780,171117738,171231144	170993956,170996760,170997823,171006282,171006643,171006889,171007063,171011454,171014948,171028405,171046362,171049950,171050174,171053853,171055172,171056566,171058197,171061156,171082852,171117857,171231314	0.717949
omental_fat_pad_female_adult_53_years	chr4	153687914	153687952	153687914	+	RAMPAGE_only	2	2	8	0.667190	2.500000	chr4	153687920	153688176	LTR|ERV1|MER57A-int	+	chr4	153684279	153705452	TLR2|ENST00000642700.1	+	153684279,153687901,153702891	153684360,153688047,153705452	0.625000
omental_fat_pad_female_adult_53_years	chr8	56559496	56559497	56559496	-	High_confidence	1216	1247	1698	141.611153	8.014862	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56494072	56559497	STRG.28861.12	-	56494072,56520085,56559452	56496333,56520567,56559497	0.555359
omental_fat_pad_female_adult_53_years	chr7	82214040	82214042	82214041	-	High_confidence	49	71	76	6.338308	5.293594	chr7	82213847	82214213	LTR|ERVL-MaLR|MLT1A0	-	chr7	82084681	82214032	STRG.26346.6	-	82084681,82117043,82136634,82170549,82213925	82084900,82117173,82136676,82170609,82214032	0.776316
omental_fat_pad_female_adult_53_years	chr3	188947212	188947237	188947236	+	High_confidence	10	10	35	2.918958	4.297300	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.800000
omental_fat_pad_female_adult_53_years	chr16	72014418	72014419	72014418	+	High_confidence	7	7	8	0.667190	2.521641	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.750000
omental_fat_pad_female_adult_53_years	chr8	102930390	102930423	102930422	+	High_confidence	7	7	25	2.084970	4.023465	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.680000
omental_fat_pad_female_adult_53_years	chr3	28347646	28347654	28347653	-	High_confidence	7	7	14	1.167583	3.546594	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.642857
omental_fat_pad_female_adult_53_years	chr19	48868595	48868614	48868613	-	High_confidence	81	105	307	25.603430	6.845929	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48865524	48868602	STRG.54568.1	-	48865524,48867536,48868082	48865610,48867626,48868602	0.990228
omental_fat_pad_female_adult_53_years	chr14	73463610	73463625	73463610	-	RAMPAGE_only	2	3	7	0.583792	2.521641	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73275106	73458617	NUMB|ENST00000554546.5	-	73275106,73282358,73284080,73287109,73292733,73297210,73323129,73355625,73366896,73409936,73458492	73277293,73282505,73284374,73287314,73292874,73297285,73323204,73355766,73366981,73410068,73458617	0.571429
omental_fat_pad_female_adult_53_years	chr9	68975783	68975784	68975783	-	High_confidence	5	5	8	0.667190	2.500000	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68971308	68975842	STRG.31609.1	-	68971308,68975663	68972641,68975842	1.000000
omental_fat_pad_female_adult_53_years	chr9	129488856	129488924	129488856	+	High_confidence	8	8	43	3.586148	4.023039	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	1.000000
omental_fat_pad_female_adult_53_years	chr5	77088061	77088109	77088061	+	High_confidence	32	35	136	11.342236	5.469133	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088058	77148523	ZBED3-AS1|ENST00000513591.5	+	77088058,77098654,77100235,77118319,77147651	77088472,77098747,77100391,77118521,77148523	0.757353
omental_fat_pad_female_adult_53_years	chr10	35449714	35449735	35449714	+	RAMPAGE_only	12	14	57	4.753731	5.124057	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.543860
omental_fat_pad_female_adult_53_years	chr1	36204472	36204489	36204472	+	RAMPAGE_only	5	5	13	1.084184	2.688722	chr1	36204301	36204536	DNA|hAT-Charlie|MER20	-	chr1	36224411	36305357	THRAP3|NM_001321473.1	+	36224411,36259381,36282532,36286367,36289059,36291373,36292597,36293850,36296582,36300885,36301555,36303795	36224505,36259484,36282700,36287270,36289764,36291546,36292709,36293935,36296770,36301084,36301696,36305357	0.538462
omental_fat_pad_female_adult_53_years	chr18	23149808	23149809	23149808	+	RAMPAGE_only	20	22	25	2.084970	3.703465	chr18	23149657	23149836	DNA|hAT-Charlie|MER5A	+	chr18	23155824	23260470	CABLES1|NM_138375.2	+	23155824,23188837,23194447,23213976,23234607,23235894,23237141,23252959,23253728,23257226	23155952,23188909,23194540,23214054,23234704,23236051,23237245,23253066,23253936,23260470	0.880000
omental_fat_pad_female_adult_53_years	chr2	11345340	11345442	11345436	-	High_confidence	63	79	194	16.179366	5.926550	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11179758	11345407	ROCK2|NM_001321643.1	-	11179758,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345407	0.752577
omental_fat_pad_female_adult_53_years	chr19	9700673	9700674	9700673	-	High_confidence	14	15	15	1.250982	2.753434	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.933333
omental_fat_pad_female_adult_53_years	chr7	11193313	11193360	11193340	+	High_confidence	8	10	28	2.335166	3.780395	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.785714
omental_fat_pad_female_adult_53_years	chr1	183590892	183590911	183590910	-	High_confidence	11	11	19	1.584577	3.286629	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.842105
omental_fat_pad_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	13	13	13	1.084184	2.777363	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
omental_fat_pad_female_adult_53_years	chr1	12572757	12572817	12572757	-	RAMPAGE_only	6	6	33	2.752160	4.233640	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	1.000000
omental_fat_pad_female_adult_53_years	chr6	79631256	79631329	79631328	+	High_confidence	38	48	143	11.926028	5.748679	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.979021
omental_fat_pad_female_adult_53_years	chr4	85778525	85778532	85778525	+	High_confidence	2	2	7	0.583792	2.807355	chr4	85778413	85778594	SINE|MIR|MIR3	+	chr4	85778697	86002670	ARHGAP24|NM_001042669.1	+	85778697,85923647,85942065,85972035,85974887,85977569,85994582,86000478	85778965,85923770,85942273,85972168,85974961,85977691,85995657,86002670	1.000000
omental_fat_pad_female_adult_53_years	chr2	238909323	238909360	238909359	+	RAMPAGE_only	15	15	59	4.920529	3.766971	chr2	238909324	238909392	LINE|L2|L2	+	chr2	238848031	238910548	TWIST2|NM_001271893.3	+	238848031,238909841	238848733,238910548	0.915254
omental_fat_pad_female_adult_53_years	chr19	40268651	40268669	40268651	-	High_confidence	7	7	42	3.502749	3.544413	chr19	40268469	40268613	SINE|MIR|MIRb	-	chr19	40255243	40269589	AKT2|ENST00000427375.1	-	40255243,40256925,40265221,40268583,40269422	40255269,40257054,40265351,40268685,40269589	0.785714
omental_fat_pad_female_adult_53_years	chr14	77076158	77076194	77076188	-	High_confidence	51	51	159	13.260408	6.258474	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77073731	77076344	STRG.45015.3	-	77073731,77076104	77074598,77076344	0.622642
omental_fat_pad_female_adult_53_years	chr12	7575242	7575284	7575283	-	RAMPAGE_only	7	7	22	1.834773	3.463281	chr12	7575005	7575582	LINE|L1|L1MB8	+	chr12	7470812	7503893	CD163|ENST00000359156.8	-	7470812,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7503644	7471397,7479996,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7503893	0.636364
omental_fat_pad_female_adult_53_years	chr5	41150948	41150966	41150948	+	RAMPAGE_only	10	10	37	3.085755	3.766640	chr5	41150900	41151910	LINE|L2|L2b	-	chr5	41164269	41165431	STRG.17844.1	+	41164269,41164720	41164318,41165431	0.810811
omental_fat_pad_female_adult_53_years	chr1	39026129	39026136	39026130	+	High_confidence	4	6	10	0.833988	2.921928	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.900000
omental_fat_pad_female_adult_53_years	chr1	70947349	70947396	70947349	+	High_confidence	159	188	641	53.458627	6.844781	chr1	70947197	70947555	LTR|ERVL-MaLR|THE1A	+	chr1	70947378	70966134	STRG.1769.5	+	70947378,70964845	70961258,70966134	0.982839
omental_fat_pad_female_adult_53_years	chr1	99661449	99661450	99661449	+	RAMPAGE_only	12	12	17	1.417780	3.028639	chr1	99661439	99661625	SINE|MIR|MIR	-	chr1	99646341	99694368	PALMD|ENST00000615664.1	+	99646341,99662318,99667641,99686718,99686724,99686929,99687075,99688774,99694018	99646362,99662399,99667717,99686722,99686790,99686963,99687189,99689872,99694368	0.647059
omental_fat_pad_female_adult_53_years	chr16	81181330	81181331	81181330	-	High_confidence	24	25	35	2.918958	4.457575	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.857143
omental_fat_pad_female_adult_53_years	chr1	161189513	161189517	161189516	+	High_confidence	3	3	8	0.667190	2.807355	chr1	161189498	161189600	LINE|L2|L2b	+	chr1	161189480	161192399	STRG.3585.1	+	161189480,161192016	161189704,161192399	0.500000
omental_fat_pad_female_adult_53_years	chr8	144853555	144853559	144853555	-	High_confidence	5	6	14	1.167583	3.085055	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	0.785714
omental_fat_pad_female_adult_53_years	chr11	61249439	61249454	61249453	+	High_confidence	6	6	17	1.417780	3.292770	chr11	61249400	61249513	LINE|L2|L2a	+	chr11	61249332	61251418	PGA5|ENST00000541528.1	+	61249332,61249915,61251131	61249813,61250014,61251418	0.823529
omental_fat_pad_female_adult_53_years	chr11	71999608	71999615	71999614	+	High_confidence	4	6	9	0.750589	2.500000	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.777778
omental_fat_pad_female_adult_53_years	chr6	153143525	153143579	153143566	+	High_confidence	17	17	66	5.504320	5.034227	chr6	153143061	153143889	LTR|ERV1|LTR78B	-	chr6	153143510	153148104	STRG.23886.1	+	153143510,153147387	153143773,153148104	0.863636
omental_fat_pad_female_adult_53_years	chr22	49657336	49657356	49657355	-	High_confidence	3	3	8	0.667190	2.807355	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.750000
omental_fat_pad_female_adult_53_years	chr9	129489063	129489126	129489125	+	High_confidence	9	13	44	3.669547	4.707677	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.795455
omental_fat_pad_female_adult_53_years	chr3	11225863	11225906	11225885	-	High_confidence	6	6	18	1.501178	3.499228	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.611111
omental_fat_pad_female_adult_53_years	chr10	30001032	30001072	30001063	-	High_confidence	30	33	131	10.925242	5.405716	chr10	30000830	30001339	LTR|ERVL|LTR40a	-	chr10	29991231	30001063	STRG.33802.1	-	29991231,30000959	29993264,30001063	0.931298
omental_fat_pad_female_adult_53_years	chr9	129698737	129698760	129698743	+	High_confidence	12	12	49	4.086541	4.718095	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129698753	129722668	STRG.33085.2	+	129698753,129719230,129720595,129722216	129698809,129719418,129720774,129722668	0.938776
omental_fat_pad_female_adult_53_years	chr9	33394026	33394103	33394066	-	High_confidence	51	54	131	10.925242	6.099957	chr9	33394009	33394115	LINE|L2|L2b	+	chr9	33385505	33394176	AQP7|ENST00000447660.3	-	33385505,33386076,33386403,33393796	33385866,33386195,33386541,33394176	0.885496
omental_fat_pad_female_adult_53_years	chr7	87040212	87040215	87040212	-	RAMPAGE_only	4	4	8	0.667190	2.750000	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.625000
omental_fat_pad_female_adult_53_years	chr13	110314055	110314141	110314140	-	High_confidence	83	108	253	21.099895	6.139516	chr13	110314011	110314270	LINE|L1|L1MD3	+	chr13	110307801	110314202	STRG.43473.3	-	110307801,110313872	110313393,110314202	0.988142
omental_fat_pad_female_adult_53_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	24	24	27	2.251767	4.133661	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.814815
omental_fat_pad_female_adult_53_years	chr6	136584493	136584495	136584493	-	High_confidence	12	20	21	1.751375	3.284184	chr6	136584318	136584690	LTR|ERVL-MaLR|THE1B	-	chr6	136580333	136584507	MAP3K5|ENST00000463140.1	-	136580333,136583554,136584401	136580406,136583740,136584507	0.857143
omental_fat_pad_female_adult_53_years	chr16	15798664	15798670	15798669	-	RAMPAGE_only	3	3	7	0.583792	2.584963	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.857143
omental_fat_pad_female_adult_53_years	chr17	47067498	47067534	47067498	-	High_confidence	108	115	501	41.782796	5.791684	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.938124
omental_fat_pad_female_adult_53_years	chr16	761100	761134	761110	+	High_confidence	52	53	288	24.018853	5.610351	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.954861
omental_fat_pad_female_adult_53_years	chr16	760891	760925	760924	+	High_confidence	40	41	74	6.171511	5.138742	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	0.986486
omental_fat_pad_female_adult_53_years	chr11	78284500	78284512	78284500	-	High_confidence	3	3	7	0.583792	2.521641	chr11	78282780	78284899	LINE|L2|L2a	+	chr11	78226619	78284699	STRG.37398.4	-	78226619,78250156,78280600,78284260	78227051,78250400,78280901,78284699	1.000000
omental_fat_pad_female_adult_53_years	chr1	70948345	70948346	70948345	+	High_confidence	23	23	25	2.084970	3.708132	chr1	70948171	70948531	LTR|ERVL-MaLR|THE1C	+	chr1	70947378	70966134	STRG.1769.1	+	70947378,70950734,70950900,70964845	70947475,70950793,70961258,70966134	0.920000
omental_fat_pad_female_adult_53_years	chr16	760733	760750	760749	+	High_confidence	5	5	10	0.833988	2.646439	chr16	760734	760840	SINE|MIR|MIRc	-	chr16	760761	768862	MSLN|ENST00000563941.5	+	760761,761132,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766667,766884,767375,768378,768647	760821,761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768862	0.800000
omental_fat_pad_female_adult_53_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	8	8	16	1.334381	2.555037	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	1.000000
omental_fat_pad_female_adult_53_years	chr7	154928492	154928504	154928503	+	High_confidence	25	25	39	3.252553	4.611949	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.974359
omental_fat_pad_female_adult_53_years	chr15	89677864	89677865	89677864	-	RAMPAGE_only	7	7	8	0.667190	2.807355	chr15	89677740	89678052	SINE|Alu|AluSx1	-	chr15	89664364	89679402	PLIN1|ENST00000300055.9	-	89664364,89666935,89667601,89669499,89669979,89671481,89673209,89677444,89679250	89665942,89667181,89667793,89669672,89670244,89671564,89673414,89677503,89679402	0.875000
omental_fat_pad_female_adult_53_years	chr9	39810023	39810064	39810033	-	High_confidence	29	29	77	6.421707	5.113618	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.779221
omental_fat_pad_female_adult_53_years	chr22	18149863	18149869	18149863	+	High_confidence	2	2	6	0.500393	2.584963	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
omental_fat_pad_female_adult_53_years	chr3	9987152	9987163	9987162	+	High_confidence	10	10	21	1.751375	2.763865	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.857143
omental_fat_pad_female_adult_53_years	chr5	14653390	14653391	14653390	-	High_confidence	42	44	44	3.669547	4.038252	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.931818
omental_fat_pad_male_adult_37_years	chr4	122917834	122917856	122917834	-	RAMPAGE_only	6	8	18	0.955942	3.614369	chr4	122917758	122918008	LINE|L2|L2b	+	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	0.888889
omental_fat_pad_male_adult_37_years	chr7	154928476	154928504	154928503	+	High_confidence	9	9	20	1.062158	3.576618	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.950000
omental_fat_pad_male_adult_37_years	chr11	65431244	65431277	65431244	+	RAMPAGE_only	22	22	54	2.867825	5.104528	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
omental_fat_pad_male_adult_37_years	chr18	9117532	9117575	9117556	+	RAMPAGE_only	11	13	44	2.336747	5.141250	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	0.772727
omental_fat_pad_male_adult_37_years	chr2	200889279	200889318	200889293	-	High_confidence	22	22	64	3.398904	5.280862	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.812500
omental_fat_pad_male_adult_37_years	chr7	104940943	104940944	104940943	+	High_confidence	748	752	766	40.680635	5.893871	chr7	104939974	104941430	LTR|ERV1|LTR12C	+	chr7	104941062	104962060	AC007384.1|ENST00000415513.1	+	104941062,104961983	104941670,104962060	0.979112
omental_fat_pad_male_adult_37_years	chr16	75305547	75305557	75305547	-	High_confidence	2	3	8	0.424863	2.750000	chr16	75305482	75305675	SINE|MIR|MIR	+	chr16	75293907	75305438	CFDP1|ENST00000562602.1	-	75293907,75301756,75305023	75294042,75301905,75305438	0.875000
omental_fat_pad_male_adult_37_years	chr7	603495	603543	603542	+	High_confidence	5	6	29	1.540128	4.606739	chr7	603435	603558	LINE|L2|L2c	+	chr7	603489	610486	STRG.27091.1	+	603489,607864,608508,610455	603616,608364,608597,610486	0.827586
omental_fat_pad_male_adult_37_years	chr9	92559076	92559123	92559122	-	RAMPAGE_only	7	8	21	1.115265	3.932138	chr9	92557942	92559647	LINE|L1|L1PB1	-	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.714286
omental_fat_pad_male_adult_37_years	chr12	104030726	104030727	104030726	+	High_confidence	35	35	43	2.283639	4.915312	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.883721
omental_fat_pad_male_adult_37_years	chr3	11274227	11274228	11274227	+	RAMPAGE_only	4	4	7	0.371755	2.521641	chr3	11274206	11274592	LINE|L2|L2b	-	chr3	11272308	11313420	ATG7|ENST00000451513.5	+	11272308,11281036,11282192,11298685,11299361,11306942,11308983,11313303	11272430,11281102,11282438,11298855,11299416,11307060,11309061,11313420	0.571429
omental_fat_pad_male_adult_37_years	chr17	78382068	78382141	78382106	+	RAMPAGE_only	20	20	77	4.089307	5.655135	chr17	78381887	78382281	LINE|L2|L2c	-	chr17	78378677	78393871	STRG.58466.13	+	78378677,78392475	78382785,78393871	0.558442
omental_fat_pad_male_adult_37_years	chr4	4269609	4269614	4269609	-	High_confidence	46	50	127	6.744701	4.093080	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.992126
omental_fat_pad_male_adult_37_years	chr5	50443311	50443319	50443311	-	High_confidence	2	3	7	0.371755	2.807355	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.857143
omental_fat_pad_male_adult_37_years	chr13	60410080	60410081	60410080	+	RAMPAGE_only	13	14	14	0.743510	3.238901	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60397830	60573864	TDRD3|ENST00000648252.1	+	60397830,60400255,60402717,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573615	60398631,60400292,60402815,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573864	0.714286
omental_fat_pad_male_adult_37_years	chr3	14945503	14945504	14945503	-	RAMPAGE_only	4	4	7	0.371755	2.521641	chr3	14945072	14946290	DNA|TcMar-Mariner|HSMAR1	-	chr3	14942778	14947505	FGD5-AS1|NR_046252.1	-	14942778,14947086	14946154,14947505	1.000000
omental_fat_pad_male_adult_37_years	chr5	42837678	42837690	42837678	-	RAMPAGE_only	3	3	11	0.584187	3.121928	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.909091
omental_fat_pad_male_adult_37_years	chr1	100268221	100268281	100268280	+	RAMPAGE_only	10	10	29	1.540128	3.417483	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266288	100292769	STRG.2855.2	+	100266288,100266523,100268136,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100292769	1.000000
omental_fat_pad_male_adult_37_years	chr15	38025914	38025915	38025914	+	High_confidence	51	53	60	3.186473	5.450274	chr15	38025737	38026073	LTR|ERVL-MaLR|THE1A	+	chr15	38025935	38040841	STRG.51917.1	+	38025935,38039995	38025997,38040841	0.600000
omental_fat_pad_male_adult_37_years	chr1	160951473	160951493	160951492	-	High_confidence	3	4	8	0.424863	2.807355	chr1	160951407	160951550	LTR|ERVL|LTR40b	+	chr1	160950552	160951474	ITLN2|ENST00000490489.1	-	160950552,160951042	160950711,160951474	0.625000
omental_fat_pad_male_adult_37_years	chr10	45000453	45000515	45000453	+	High_confidence	42	42	228	12.108596	5.813223	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.978070
omental_fat_pad_male_adult_37_years	chr2	55618850	55618881	55618850	-	High_confidence	10	11	18	0.955942	4.058814	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.944444
omental_fat_pad_male_adult_37_years	chr5	157107289	157107337	157107316	-	High_confidence	19	20	69	3.664444	5.366587	chr5	157107099	157107287	DNA|hAT-Charlie|MER5A	-	chr5	157106653	157107302	HAVCR2|ENST00000517358.1	-	157106653,157107045	157106962,157107302	0.681159
omental_fat_pad_male_adult_37_years	chr5	67646675	67646709	67646708	-	High_confidence	20	20	51	2.708502	5.023465	chr5	67646558	67646761	SINE|MIR|MIRc	-	chr5	67629624	67646761	STRG.20744.1	-	67629624,67634306,67636807,67646605	67633335,67634395,67636948,67646761	0.921569
omental_fat_pad_male_adult_37_years	chr3	129559620	129559621	129559620	-	High_confidence	6	6	8	0.424863	2.807355	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	0.875000
omental_fat_pad_male_adult_37_years	chr8	116648841	116648905	116648864	-	RAMPAGE_only	12	14	39	2.071207	4.670018	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
omental_fat_pad_male_adult_37_years	chr10	93431448	93431489	93431479	-	RAMPAGE_only	18	18	62	3.292688	5.448394	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.838710
omental_fat_pad_male_adult_37_years	chr3	64542130	64542188	64542187	-	RAMPAGE_only	4	5	16	0.849726	3.373557	chr3	64542101	64542178	SINE|MIR|MIRb	-	chr3	64521480	64616150	ADAMTS9|ENST00000481060.2	-	64521480,64522165,64533165,64539202,64541094,64541319,64541525,64541837,64546757,64550891,64561577,64568367,64594257,64596829,64601943,64603921,64604226,64606959,64613344,64615320,64615959	64521668,64522260,64533270,64539294,64541228,64541414,64541620,64541970,64546952,64551062,64561751,64568535,64594434,64596991,64602213,64604089,64604331,64607079,64613509,64615485,64616150	0.875000
omental_fat_pad_male_adult_37_years	chr1	166850242	166850302	166850301	+	RAMPAGE_only	2	3	11	0.584187	3.321928	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.909091
omental_fat_pad_male_adult_37_years	chr6	136584493	136584494	136584493	-	RAMPAGE_only	4	7	7	0.371755	2.807355	chr6	136584318	136584690	LTR|ERVL-MaLR|THE1B	-	chr6	136557046	136792518	MAP3K5|ENST00000359015.4	-	136557046,136558799,136561532,136562502,136567630,136580300,136583554,136592172,136592436,136601021,136601801,136605208,136611281,136613119,136614158,136622847,136637324,136639542,136642519,136650983,136656306,136659218,136669282,136694139,136695950,136697218,136698488,136705109,136720449,136791709	136557818,136558876,136561645,136562615,136567874,136580406,136583740,136592341,136592614,136601042,136601979,136605366,136611387,136613256,136614286,136622981,136637406,136639638,136642569,136651091,136656460,136659378,136669395,136694310,136696057,136697387,136698682,136705133,136720589,136792518	1.000000
omental_fat_pad_male_adult_37_years	chr12	2798807	2798822	2798807	+	High_confidence	2	2	6	0.318647	2.584963	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.666667
omental_fat_pad_male_adult_37_years	chr16	66730129	66730184	66730129	-	High_confidence	2	2	18	0.955942	2.863826	chr16	66729779	66730080	SINE|Alu|AluSx1	-	chr16	66723584	66730219	DYNC1LI2|ENST00000569320.5	-	66723584,66725827,66727687,66729039,66730111	66723822,66725944,66727805,66729099,66730219	1.000000
omental_fat_pad_male_adult_37_years	chr11	78284424	78284474	78284473	-	RAMPAGE_only	5	5	19	1.009050	3.725481	chr11	78282780	78284899	LINE|L2|L2a	+	chr11	78215289	78341880	GAB2|NM_012296.3	-	78215289,78220318,78221676,78222104,78223411,78225107,78226464,78250156,78280600,78341759	78219415,78220444,78221779,78222195,78223676,78225202,78227051,78250400,78280901,78341880	0.684211
omental_fat_pad_male_adult_37_years	chr6	30493071	30493108	30493107	+	RAMPAGE_only	6	7	43	2.283639	4.517201	chr6	30493011	30493324	SINE|Alu|AluSc8	+	chr6	30489466	30494205	HLA-E|ENST00000376630.4	+	30489466,30489725,30490239,30491136,30491536,30492403,30492540,30492748	30489595,30489995,30490515,30491412,30491653,30492436,30492583,30494205	0.976744
omental_fat_pad_male_adult_37_years	chr19	51795150	51795210	51795162	+	High_confidence	14	17	101	5.363896	5.564773	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.900990
omental_fat_pad_male_adult_37_years	chr19	10379686	10379748	10379686	-	High_confidence	3	3	12	0.637295	3.027169	chr19	10379599	10379809	SINE|MIR|MIRb	+	chr19	10368328	10380510	TYK2|ENST00000530829.1	-	10368328,10369756,10378213,10379614,10380379	10368418,10369877,10378426,10379779,10380510	0.750000
omental_fat_pad_male_adult_37_years	chr14	103931833	103931834	103931833	+	RAMPAGE_only	7	7	11	0.584187	3.095795	chr14	103931646	103932201	LTR|ERVL-MaLR|MLT1E2	+	chr14	103928816	103965481	TDRD9|ENST00000496087.5	+	103928816,103945405,103955663,103963078,103965332	103928923,103945525,103955770,103963176,103965481	0.818182
omental_fat_pad_male_adult_37_years	chr11	90251203	90251205	90251204	+	High_confidence	8	13	15	0.796618	3.589898	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.666667
omental_fat_pad_male_adult_37_years	chr2	113117892	113117971	113117970	+	High_confidence	78	102	244	12.958322	6.578524	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.909836
omental_fat_pad_male_adult_37_years	chr9	73163103	73163131	73163130	+	RAMPAGE_only	2	2	8	0.424863	2.807355	chr9	73162911	73163325	LTR|ERVL-MaLR|MSTB1	-	chr9	73160284	73165544	ANXA1|ENST00000489109.1	+	73160284,73160802,73162781,73163475,73165115	73160376,73160893,73162861,73163532,73165544	0.500000
omental_fat_pad_male_adult_37_years	chr6	3083297	3083306	3083297	+	RAMPAGE_only	2	2	8	0.424863	2.807355	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3081902	3115185	STRG.23402.4	+	3081902,3089580,3104224,3105481,3110802,3113052	3085408,3089657,3104315,3106051,3110955,3115185	0.875000
omental_fat_pad_male_adult_37_years	chr11	65441763	65442031	65441842	+	RAMPAGE_only	111	111	868	46.097638	6.473057	chr11	65441504	65441864	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998848
omental_fat_pad_male_adult_37_years	chr7	11253112	11253113	11253112	+	High_confidence	54	54	54	2.867825	5.370538	chr7	11252764	11253207	LTR|ERVL|LTR40b	-	chr7	11253112	11385678	AC004160.1|ENST00000421121.5	+	11253112,11379286,11383796	11253225,11379369,11385678	0.500000
omental_fat_pad_male_adult_37_years	chr11	114295334	114295337	114295336	+	High_confidence	15	19	25	1.327697	4.418296	chr11	114294850	114295386	LTR|ERV1|LTR35A	-	chr11	114295812	114312516	NNMT|NM_006169.2	+	114295812,114297950,114312044	114296710,114298158,114312516	0.520000
omental_fat_pad_male_adult_37_years	chr9	63335620	63335642	63335620	+	RAMPAGE_only	3	3	9	0.477971	2.947703	chr9	63335574	63335868	SINE|Alu|AluSx	-	chr9	63334597	63343660	AL845321.1|ENST00000432011.2	+	63334597,63335176,63336147,63338596,63343375	63334734,63335279,63336255,63338749,63343660	0.555556
omental_fat_pad_male_adult_37_years	chr11	3380960	3380961	3380960	+	High_confidence	48	51	56	2.974041	5.351823	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3381168	3397000	STRG.40055.4	+	3381168,3383461,3384166	3381932,3383546,3397000	0.750000
omental_fat_pad_male_adult_37_years	chr2	43486716	43486717	43486716	-	RAMPAGE_only	13	15	15	0.796618	3.521641	chr2	43486640	43486924	DNA|hAT-Charlie|MER102b	-	chr2	43230850	43570515	THADA|ENST00000407351.5	-	43230850,43232712,43279764,43286907,43291695,43292103,43292833,43320445,43344121,43397970,43485233,43498832,43505621,43508647,43527878,43541158,43549209,43551788,43552203,43556344,43560233,43566697,43570387	43231343,43232882,43279896,43287061,43291768,43292222,43293213,43320540,43344237,43398139,43485325,43498955,43505735,43508780,43527988,43541316,43549368,43551925,43552339,43556555,43560385,43566821,43570515	0.600000
omental_fat_pad_male_adult_37_years	chr9	125650410	125650434	125650426	-	High_confidence	12	17	41	2.177423	4.853056	chr9	125649959	125650542	LINE|L2|L2b	+	chr9	125444500	125650417	MAPKAP1|ENST00000420643.5	-	125444500,125467971,125484442,125543058,125559632,125585554,125599834,125650363	125444598,125468109,125484583,125543168,125559809,125585727,125599927,125650417	0.585366
omental_fat_pad_male_adult_37_years	chr10	78977915	78977963	78977923	-	RAMPAGE_only	20	20	46	2.442962	5.186393	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78962394	ZMIZ1-AS1|ENST00000428862.5	-	78943327,78945911,78960504,78961253	78944747,78945989,78960716,78962394	0.695652
omental_fat_pad_male_adult_37_years	chr1	184568375	184568409	184568408	+	High_confidence	10	10	25	1.327697	3.751629	chr1	184568204	184568449	LINE|L1|L1MB3	-	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.920000
omental_fat_pad_male_adult_37_years	chr2	191677561	191677567	191677561	+	High_confidence	6	6	10	0.531079	2.947703	chr2	191677451	191677600	SINE|MIR|MIR3	+	chr2	191678067	191682487	NABP1|ENST00000491331.5	+	191678067,191678989,191681945	191678241,191679128,191682487	0.500000
omental_fat_pad_male_adult_37_years	chr8	138608087	138608096	138608087	-	High_confidence	4	4	15	0.796618	3.378783	chr8	138608030	138608272	SINE|MIR|MIRb	+	chr8	138588173	138608121	STRG.33389.1	-	138588173,138591423,138594016,138596903,138598718,138602114,138604733,138606380,138607935	138589440,138591501,138594199,138596970,138598898,138602159,138604769,138606452,138608121	0.666667
omental_fat_pad_male_adult_37_years	chr13	30869097	30869103	30869102	+	High_confidence	19	19	41	2.177423	5.064869	chr13	30868983	30869448	LINE|L2|L2	-	chr13	30869089	30869595	STRG.47476.1	+	30869089	30869595	0.902439
omental_fat_pad_male_adult_37_years	chr8	11864408	11864445	11864444	-	RAMPAGE_only	6	7	28	1.487021	4.363713	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.642857
omental_fat_pad_male_adult_37_years	chr1	206910270	206910271	206910270	-	High_confidence	6	6	9	0.477971	3.169925	chr1	206910225	206910298	DNA|hAT-Ac|OldhAT1	+	chr1	206904524	206909945	FCMR|ENST00000474041.5	-	206904524,206909461,206909724	206905147,206909520,206909945	0.888889
omental_fat_pad_male_adult_37_years	chr15	66401878	66401899	66401878	+	RAMPAGE_only	4	4	10	0.531079	2.846439	chr15	66401474	66401958	LINE|L2|L2c	-	chr15	66386872	66491544	MAP2K1|NM_002755.3	+	66386872,66435026,66436745,66443279,66444655,66481754,66484989,66487227,66489214,66489717,66490501	66387427,66435237,66436892,66443357,66444707,66481879,66485191,66487292,66489276,66489763,66491544	1.000000
omental_fat_pad_male_adult_37_years	chr12	16353884	16353885	16353884	+	High_confidence	89	98	110	5.841867	5.181660	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.709091
omental_fat_pad_male_adult_37_years	chr1	153119468	153119469	153119468	-	RAMPAGE_only	6	6	6	0.318647	2.584963	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112113	153113515	SPRR2F|ENST00000468739.1	-	153112113,153113473	153112752,153113515	1.000000
omental_fat_pad_male_adult_37_years	chr4	79492591	79492596	79492595	+	High_confidence	3	3	8	0.424863	2.521641	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.875000
omental_fat_pad_male_adult_37_years	chr5	38468316	38468485	38468484	-	High_confidence	79	85	361	19.171944	6.997952	chr5	38468426	38468568	SINE|MIR|MIRc	-	chr5	38466162	38468339	AC010457.1|ENST00000510137.1	-	38466162,38468238	38466398,38468339	0.650970
omental_fat_pad_male_adult_37_years	chr13	48446737	48446738	48446737	+	RAMPAGE_only	6	6	8	0.424863	3.000000	chr13	48446345	48447306	LINE|L2|L2a	-	chr13	48444827	48456307	RB1|ENST00000480491.1	+	48444827,48452992,48456203	48445221,48453111,48456307	0.750000
omental_fat_pad_male_adult_37_years	chr4	158173024	158173025	158173024	-	High_confidence	66	68	90	4.779709	5.613760	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.800000
omental_fat_pad_male_adult_37_years	chr15	30624347	30624368	30624362	+	High_confidence	4	4	15	0.796618	3.240224	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.866667
omental_fat_pad_male_adult_37_years	chr6	31587007	31587010	31587009	+	High_confidence	21	30	41	2.177423	4.765312	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.975610
omental_fat_pad_male_adult_37_years	chr22	38192096	38192115	38192097	-	RAMPAGE_only	6	8	18	0.955942	3.690117	chr22	38191851	38192921	LINE|L2|L2c	-	chr22	38140134	38181830	PLA2G6|ENST00000436218.5	-	38140134,38145437,38169217,38181783	38140169,38145653,38169471,38181830	0.666667
omental_fat_pad_male_adult_37_years	chr1	175177611	175177619	175177611	-	RAMPAGE_only	2	2	8	0.424863	2.750000	chr1	175177563	175177679	SINE|MIR|MIRc	+	chr1	175156986	175166741	KIAA0040|ENST00000619513.1	-	175156986,175166561	175161146,175166741	1.000000
omental_fat_pad_male_adult_37_years	chr2	48569046	48569047	48569046	+	High_confidence	4	4	6	0.318647	2.584963	chr2	48569019	48569241	SINE|MIR|MIRb	+	chr2	48569019	48679609	STON1-GTF2A1L|NM_172311.2	+	48569019,48580586,48591652,48620850,48621166,48642401,48645032,48646452,48669721,48671590,48679334	48569086,48582563,48591855,48620952,48621290,48642457,48645117,48647042,48669982,48671680,48679609	0.833333
omental_fat_pad_male_adult_37_years	chr12	1059448	1059473	1059448	+	RAMPAGE_only	21	21	40	2.124315	4.733870	chr12	1058934	1060038	LINE|L1|L1P4	-	chr12	1083140	1444589	ERC1|ENST00000538971.6	+	1083140,1104749,1110191,1115865,1141619,1180539,1181924,1183280,1189858,1204500,1236768,1289851,1371832,1408148,1410388,1444561	1083580,1104824,1110347,1116033,1141787,1180677,1182065,1183421,1190052,1204512,1236904,1290012,1371977,1408247,1410453,1444589	0.925000
omental_fat_pad_male_adult_37_years	chr21	29077477	29077517	29077486	+	High_confidence	4	7	16	0.849726	3.452820	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.562500
omental_fat_pad_male_adult_37_years	chr11	76670315	76670316	76670315	-	High_confidence	5	5	8	0.424863	2.807355	chr11	76670227	76670395	SINE|MIR|MIR3	+	chr11	76661034	76670000	LRRC32|ENST00000421973.1	-	76661034,76665870,76669761	76661508,76665958,76670000	0.625000
omental_fat_pad_male_adult_37_years	chr8	80485592	80485596	80485592	+	High_confidence	8	8	17	0.902834	3.852169	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.705882
omental_fat_pad_male_adult_37_years	chr7	80524841	80524847	80524846	+	RAMPAGE_only	55	62	104	5.523219	5.768740	chr7	80524761	80524908	LTR|ERV1|LTR38B	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.846154
omental_fat_pad_male_adult_37_years	chr12	79455468	79455537	79455514	-	High_confidence	21	23	93	4.939033	5.259642	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.924731
omental_fat_pad_male_adult_37_years	chr11	65442286	65442601	65442584	+	RAMPAGE_only	28	29	178	9.453202	6.356294	chr11	65442603	65442894	SINE|Alu|AluSx4	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.988764
omental_fat_pad_male_adult_37_years	chr12	15764153	15764159	15764153	-	RAMPAGE_only	752	795	2095	111.261005	7.459732	chr12	15763995	15764357	LTR|ERVL-MaLR|THE1B	-	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.563723
omental_fat_pad_male_adult_37_years	chr9	72363498	72363543	72363498	-	High_confidence	2	3	15	0.796618	3.378783	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.600000
omental_fat_pad_male_adult_37_years	chr10	65570521	65570529	65570521	+	High_confidence	4	6	10	0.531079	3.169925	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570535	65585775	LINC01515|ENST00000608678.5	+	65570535,65571424,65572934,65581611,65585484	65570759,65571579,65573056,65581673,65585775	0.600000
omental_fat_pad_male_adult_37_years	chr19	44914321	44914322	44914321	+	High_confidence	40	40	50	2.655394	5.198102	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.720000
omental_fat_pad_male_adult_37_years	chr11	65433906	65434286	65434285	+	RAMPAGE_only	59	61	390	20.712073	6.793224	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.997436
omental_fat_pad_male_adult_37_years	chr4	38078772	38078774	38078772	+	RAMPAGE_only	3	5	7	0.371755	2.584963	chr4	38078433	38078801	LTR|ERVL-MaLR|MLT1A	+	chr4	38020676	38137743	TBC1D1|ENST00000510573.6	+	38020676,38021585,38027787,38035587,38044361,38045816,38049617,38053105,38054198,38089931,38095928,38102998,38115709,38118032,38124961,38133083,38137134	38020695,38021718,38027879,38035698,38044490,38045903,38049898,38053225,38054338,38090117,38096090,38103157,38115954,38118192,38125131,38133257,38137743	0.857143
omental_fat_pad_male_adult_37_years	chr2	29114205	29114219	29114218	+	High_confidence	8	8	17	0.902834	3.734522	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.647059
omental_fat_pad_male_adult_37_years	chr20	44746188	44746254	44746253	-	High_confidence	9	10	27	1.433913	4.236369	chr20	44746252	44746334	SINE|MIR|MIR3	+	chr20	44695201	44745995	KCNK15-AS1|ENST00000445420.5	-	44695201,44738819,44745964	44695507,44738934,44745995	0.666667
omental_fat_pad_male_adult_37_years	chr6	48111154	48111178	48111154	-	RAMPAGE_only	4	4	9	0.477971	2.750000	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47878027	48068689	PTCHD4|NM_001013732.3	-	47878027,48008633,48068229	47879936,48009114,48068689	0.666667
omental_fat_pad_male_adult_37_years	chrX	5726324	5726325	5726324	-	High_confidence	89	94	111	5.894974	5.105821	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5719170	5726310	STRG.66662.1	-	5719170,5725929	5719872,5726310	0.963964
omental_fat_pad_male_adult_37_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	16	17	17	0.902834	3.125000	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.941176
omental_fat_pad_male_adult_37_years	chr10	6779621	6779631	6779630	+	High_confidence	5	5	10	0.531079	3.121928	chr10	6779419	6779969	LTR|ERVL|MLT2A2	+	chr10	6779607	6877888	AL392086.2|ENST00000650205.1	+	6779607,6781303,6833642,6837973,6873799,6877275	6779887,6781486,6833688,6838008,6873873,6877888	0.500000
omental_fat_pad_male_adult_37_years	chr5	180830959	180831032	180831031	+	High_confidence	12	12	59	3.133365	5.350040	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831026	180834779	LINC00847|ENST00000508309.1	+	180831026,180834311	180831229,180834779	0.559322
omental_fat_pad_male_adult_37_years	chr9	134373102	134373106	134373105	+	High_confidence	8	12	22	1.168373	4.011365	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134372660	134440733	STRG.36688.2	+	134372660,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134373180,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440733	0.681818
omental_fat_pad_male_adult_37_years	chrX	5726073	5726132	5726116	-	High_confidence	15	17	58	3.080257	4.907988	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719170	5726310	STRG.66662.1	-	5719170,5725929	5719872,5726310	0.862069
omental_fat_pad_male_adult_37_years	chr19	55255762	55255769	55255762	-	High_confidence	8	8	16	0.849726	3.189898	chr19	55255671	55256025	LINE|L2|L2b	+	chr19	55245343	55255769	PPP6R1|ENST00000592242.1	-	55245343,55245491,55246876,55255674	55245402,55245678,55247109,55255769	0.875000
omental_fat_pad_male_adult_37_years	chr3	45034833	45034869	45034840	+	RAMPAGE_only	12	14	36	1.911884	4.474938	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	0.972222
omental_fat_pad_male_adult_37_years	chr16	20674497	20674498	20674497	+	High_confidence	51	51	55	2.920933	3.885759	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.909091
omental_fat_pad_male_adult_37_years	chr2	174118081	174118085	174118081	-	RAMPAGE_only	5	8	13	0.690402	3.418296	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075189	174079351	OLA1|ENST00000497760.1	-	174075189,174078967	174075527,174079351	0.769231
omental_fat_pad_male_adult_37_years	chr11	78532950	78532951	78532950	+	High_confidence	8	8	11	0.584187	3.095795	chr11	78532498	78533068	LTR|ERV1|LTR24C	+	chr11	78533175	78558565	AP003110.1|ENST00000526976.1	+	78533175,78546508,78555214,78558263	78533303,78546640,78555369,78558565	0.636364
omental_fat_pad_male_adult_37_years	chr12	16259104	16259149	16259148	+	High_confidence	27	27	40	2.124315	4.558107	chr12	16259051	16259251	SINE|Alu|AluJb	-	chr12	16259097	16264884	STRG.44502.1	+	16259097,16262093	16259195,16264884	0.725000
omental_fat_pad_male_adult_37_years	chr6	109325608	109325647	109325608	+	High_confidence	6	6	21	1.115265	3.681881	chr6	109324446	109326053	LINE|L2|L2a	-	chr6	109325643	109355063	STRG.25596.2	+	109325643,109329002,109336367,109337395,109337756,109338447,109340901,109341298,109342398,109343986,109348426,109354847	109325795,109329112,109336517,109337449,109337939,109338615,109341054,109341433,109342551,109344196,109348547,109355063	0.857143
omental_fat_pad_male_adult_37_years	chrX	136175628	136175629	136175628	+	RAMPAGE_only	9	9	10	0.531079	2.947703	chrX	136175160	136175815	LINE|L1|L1ME4c	+	chrX	136169925	136211359	FHL1|ENST00000345434.7	+	136169925,136206406,136207015,136207791,136208454,136209242,136209870	136169980,136206588,136207190,136207961,136208641,136209442,136211359	0.900000
omental_fat_pad_male_adult_37_years	chr1	242203570	242203622	242203570	+	High_confidence	50	55	132	7.010240	6.039874	chr1	242203418	242203822	LTR|ERVL-MaLR|MSTB	+	chr1	242203554	242210827	AL591686.1|ENST00000421878.2	+	242203554,242209217,242210368	242203743,242209335,242210827	0.712121
omental_fat_pad_male_adult_37_years	chr11	123060124	123060229	123060168	-	High_confidence	53	58	351	18.640865	5.572797	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	0.994302
omental_fat_pad_male_adult_37_years	chr11	33723181	33723182	33723181	-	High_confidence	6	6	7	0.371755	2.584963	chr11	33723085	33723187	SINE|MIR|MIRb	-	chr11	33703009	33722952	CD59|NM_001127227.1	-	33703009,33717369,33722378,33722916	33710343,33717471,33722463,33722952	0.714286
omental_fat_pad_male_adult_37_years	chr12	91179462	91179526	91179462	-	High_confidence	1433	1477	6423	341.111903	7.559954	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.544761
omental_fat_pad_male_adult_37_years	chr9	77944995	77945041	77944995	-	RAMPAGE_only	3	3	17	0.902834	3.750000	chr9	77944910	77945186	DNA|TcMar-Tigger|Tigger19b	+	chr9	77716273	78031449	GNAQ|NM_002072.4	-	77716273,77728513,77794462,77797519,77815615,77922160,78031099	77721513,77728667,77794592,77797648,77815770,77922345,78031449	0.529412
omental_fat_pad_male_adult_37_years	chr16	53519530	53519551	53519550	-	RAMPAGE_only	4	4	9	0.477971	2.947703	chr16	53519391	53519715	LINE|L2|L2a	+	chr16	53495077	53504411	AKTIP|ENST00000565408.5	-	53495077,53495261,53498390,53500217,53504328	53495173,53495326,53498596,53500329,53504411	0.555556
omental_fat_pad_male_adult_37_years	chr17	1487914	1487946	1487924	-	RAMPAGE_only	3	4	10	0.531079	2.947703	chr17	1487635	1487943	SINE|Alu|AluSx1	+	chr17	1482488	1486921	MYO1C|ENST00000573853.5	-	1482488,1482860,1483609,1484147,1486879	1482558,1483059,1483725,1484303,1486921	0.500000
omental_fat_pad_male_adult_37_years	chr15	89665480	89665663	89665531	-	RAMPAGE_only	16	18	137	7.275779	5.646374	chr15	89665137	89665552	DNA|TcMar-Mariner|MARNA	-	chr15	89664364	89679402	PLIN1|ENST00000300055.9	-	89664364,89666935,89667601,89669499,89669979,89671481,89673209,89677444,89679250	89665942,89667181,89667793,89669672,89670244,89671564,89673414,89677503,89679402	0.985401
omental_fat_pad_male_adult_37_years	chr3	114624940	114625007	114625006	-	High_confidence	25	26	183	9.718742	5.638203	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.797814
omental_fat_pad_male_adult_37_years	chr19	46350849	46350850	46350849	+	RAMPAGE_only	17	19	22	1.168373	3.064970	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.909091
omental_fat_pad_male_adult_37_years	chr3	197960763	197960810	197960790	+	High_confidence	5	5	25	1.327697	3.834963	chr3	197960678	197960861	DNA|hAT-Charlie|MER5A	-	chr3	197960256	198038667	LMLN|ENST00000332636.5	+	197960256,197974376,197975041,197976028,197976597,197980325,197983942,197985795,197990558,197996174,197999265,198019252,198021445,198024657,198035832,198038566	197960319,197974474,197975072,197976111,197976715,197980504,197984048,197985890,197990676,197996282,197999342,198019385,198021605,198024788,198036043,198038667	0.640000
omental_fat_pad_male_adult_37_years	chr1	159920334	159920415	159920334	-	RAMPAGE_only	7	7	64	3.398904	5.370865	chr1	159920065	159920288	LINE|CR1|L3b	-	chr1	159918106	159923717	TAGLN2|NM_001277224.1	-	159918106,159919273,159919660,159920329,159923435	159918941,159919376,159919835,159920537,159923717	0.968750
omental_fat_pad_male_adult_37_years	chr17	4143196	4143244	4143199	+	High_confidence	39	40	147	7.806858	5.732398	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	1.000000
omental_fat_pad_male_adult_37_years	chr15	90467553	90467579	90467578	+	RAMPAGE_only	2	3	7	0.371755	2.584963	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90388260	90500371	IQGAP1|ENST00000560738.1	+	90388260,90390773,90466046,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390824,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500371	0.714286
omental_fat_pad_male_adult_37_years	chr3	135965670	135965749	135965723	+	High_confidence	19	28	172	9.134555	5.781937	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.959302
omental_fat_pad_male_adult_37_years	chr1	32221802	32221824	32221802	+	High_confidence	5	5	12	0.637295	2.550341	chr1	32221596	32221823	SINE|MIR|MIRb	-	chr1	32221927	32226295	EIF3I|ENST00000355082.9	+	32221927,32222357,32222537,32224033,32224409,32226170	32222032,32222444,32222630,32224121,32224475,32226295	0.583333
omental_fat_pad_male_adult_37_years	chr3	28291847	28291848	28291847	+	High_confidence	12	16	16	0.849726	3.280639	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.875000
omental_fat_pad_male_adult_37_years	chr2	146898297	146898314	146898313	-	High_confidence	9	10	20	1.062158	3.646439	chr2	146898135	146898466	LTR|ERVL-MaLR|MLT1A0	-	chr2	146895727	146898303	STRG.9456.1	-	146895727	146898303	0.550000
omental_fat_pad_male_adult_37_years	chr15	38004722	38004736	38004724	+	High_confidence	12	27	60	3.186473	5.103249	chr15	38003252	38004953	LINE|L1|L1M1	-	chr15	38004745	38025018	LINC02345|ENST00000557883.2	+	38004745,38020191,38024680	38004832,38020532,38025018	0.850000
omental_fat_pad_male_adult_37_years	chr13	30863476	30863492	30863476	+	RAMPAGE_only	3	3	9	0.477971	2.500000	chr13	30863143	30863642	LTR|ERVL|MER74A	+	chr13	30906174	30925572	MEDAG|NM_032849.3	+	30906174,30917402,30921013,30921560,30924310	30906793,30917512,30921126,30921846,30925572	0.666667
omental_fat_pad_male_adult_37_years	chr17	47067487	47067513	47067498	-	High_confidence	63	67	281	14.923314	5.748863	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.943060
omental_fat_pad_male_adult_37_years	chr1	19980362	19980363	19980362	-	High_confidence	15	17	17	0.902834	3.381580	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	0.705882
omental_fat_pad_male_adult_37_years	chr17	78381978	78382008	78381978	+	RAMPAGE_only	6	7	13	0.690402	2.931209	chr17	78381887	78382281	LINE|L2|L2c	-	chr17	78378677	78393871	STRG.58466.13	+	78378677,78392475	78382785,78393871	0.692308
omental_fat_pad_male_adult_37_years	chr2	102143562	102143563	102143562	+	High_confidence	40	45	52	2.761610	4.971653	chr2	102143519	102143634	SINE|MIR|MIRc	-	chr2	102142785	102179874	IL1R1|ENST00000410023.5	+	102142785,102153940,102157718,102164773,102165114,102166112,102168597,102171800,102172686,102174586,102175477,102176352	102143020,102154017,102157785,102165008,102165304,102166281,102168663,102171918,102172838,102174730,102175645,102179874	0.750000
omental_fat_pad_male_adult_37_years	chr14	50756942	50756943	50756942	-	RAMPAGE_only	5	7	7	0.371755	2.521641	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
omental_fat_pad_male_adult_37_years	chr9	121313981	121314021	121314002	+	RAMPAGE_only	133	134	470	24.960703	5.952747	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.995745
omental_fat_pad_male_adult_37_years	chr22	44181154	44181184	44181183	+	High_confidence	3	3	6	0.318647	2.584963	chr22	44181132	44181213	LINE|L2|L2a	-	chr22	44181335	44206622	PARVG|ENST00000475485.6	+	44181335,44181741,44183317,44185807,44186576,44189113,44190550,44192048,44196156,44196346,44198620,44205756,44206316	44181370,44181917,44183408,44185872,44187878,44189254,44190666,44192129,44196213,44196415,44198722,44205829,44206622	0.833333
omental_fat_pad_male_adult_37_years	chr3	62150038	62150060	62150059	-	RAMPAGE_only	4	4	10	0.531079	3.121928	chr3	62149964	62150083	LINE|L2|L2a	+	chr3	62137259	62138212	STRG.13946.1	-	62137259	62138212	0.500000
omental_fat_pad_male_adult_37_years	chr5	122074111	122074156	122074155	-	RAMPAGE_only	6	7	19	1.009050	3.350209	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065943	122076083	LOX|ENST00000505593.5	-	122065943,122070052,122070493,122074012,122075403,122076017	122066749,122070168,122070589,122074169,122075541,122076083	0.736842
omental_fat_pad_male_adult_37_years	chr4	128570309	128570334	128570309	-	High_confidence	18	18	46	2.442962	4.924969	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.891304
omental_fat_pad_male_adult_37_years	chr14	100066439	100066440	100066439	+	High_confidence	5	5	8	0.424863	2.807355	chr14	100066222	100066467	SINE|MIR|MIRc	-	chr14	100066436	100128581	EVL|ENST00000557153.5	+	100066436,100084686,100097480,100123538,100126706,100128518	100066487,100084855,100097658,100123602,100126771,100128581	0.875000
omental_fat_pad_male_adult_37_years	chr1	180096101	180096140	180096139	+	RAMPAGE_only	2	2	7	0.371755	2.521641	chr1	180096189	180096346	LINE|L2|L2c	+	chr1	180073818	180113380	CEP350|ENST00000429851.5	+	180073818,180075021,180078462,180080516,180084017,180087577,180090713,180092613,180095522,180096037,180098862,180110996	180073908,180075221,180078674,180080661,180084178,180087717,180090796,180094616,180095930,180096184,180098985,180113380	1.000000
omental_fat_pad_male_adult_37_years	chrX	120143500	120143501	120143500	+	High_confidence	142	142	148	7.859966	5.630278	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120143514	120146847	STRG.68571.1	+	120143514,120145637	120143900,120146847	0.932432
omental_fat_pad_male_adult_37_years	chr14	55671844	55671872	55671871	+	High_confidence	5	5	18	0.955942	3.969816	chr14	55671902	55672073	DNA|hAT-Charlie|MER5A	+	chr14	55671314	55684579	KTN1|ENST00000556631.1	+	55671314,55678351,55679564,55684098	55675918,55678444,55679685,55684579	0.944444
omental_fat_pad_male_adult_37_years	chr5	138369943	138369964	138369963	+	RAMPAGE_only	3	3	15	0.796618	3.521641	chr5	138369795	138370010	SINE|MIR|MIRc	-	chr5	138372673	138437028	KDM3B|ENST00000510866.5	+	138372673,138375092,138377719,138379583,138381515,138386021,138386288,138391012,138393170,138398177,138399859,138415131,138417482,138418952,138420705,138424074,138425410,138426974,138427188,138427966,138429825,138430248,138431424,138435619	138372841,138375206,138377825,138379708,138381590,138386190,138386621,138392261,138393372,138398392,138400012,138415239,138417610,138419232,138420962,138424341,138425582,138427065,138427319,138428086,138429965,138430425,138431559,138437028	0.933333
omental_fat_pad_male_adult_37_years	chr19	54616933	54616968	54616967	+	High_confidence	11	11	34	1.805668	4.535849	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54616929	54637556	LILRB1|NM_006669.6	+	54616929,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637556	1.000000
omental_fat_pad_male_adult_37_years	chr20	23087259	23087260	23087259	-	High_confidence	25	35	37	1.964991	4.151041	chr20	23087236	23087476	LTR|ERVL|LTR16C	-	chr20	23086724	23087253	STRG.63221.2	-	23086724	23087253	0.864865
omental_fat_pad_male_adult_37_years	chr7	101308299	101308325	101308324	+	High_confidence	44	46	137	7.275779	5.761552	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	1.000000
omental_fat_pad_male_adult_37_years	chr2	191677599	191677635	191677599	+	High_confidence	3	3	10	0.531079	2.721928	chr2	191677451	191677600	SINE|MIR|MIR3	+	chr2	191678067	191682487	NABP1|ENST00000491331.5	+	191678067,191678989,191681945	191678241,191679128,191682487	0.600000
omental_fat_pad_male_adult_37_years	chr1	171268995	171268996	171268995	+	RAMPAGE_only	39	39	48	2.549178	4.193934	chr1	171268815	171269160	LTR|ERVL-MaLR|THE1B	+	chr1	171275345	171283196	FMO1|ENST00000472893.1	+	171275345,171278728,171280785,171281977,171283143	171275508,171278871,171280985,171282065,171283196	0.875000
omental_fat_pad_male_adult_37_years	chr3	45076548	45076572	45076548	+	High_confidence	46	48	73	3.876875	5.581529	chr3	45076354	45076709	LTR|ERVL-MaLR|THE1A	+	chr3	45076879	45083461	STRG.13143.2	+	45076879,45082256	45078609,45083461	0.657534
omental_fat_pad_male_adult_37_years	chr1	112956793	112956805	112956793	+	High_confidence	2	2	7	0.371755	2.807355	chr1	112956705	112956908	SINE|MIR|MIR	+	chr1	112956519	112968398	SLC16A1-AS1|ENST00000420168.1	+	112956519,112960476,112968034	112956956,112960575,112968398	0.571429
omental_fat_pad_male_adult_37_years	chr3	134485370	134485388	134485370	-	High_confidence	4	4	9	0.477971	2.500000	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.555556
omental_fat_pad_male_adult_37_years	chr21	28048446	28048447	28048446	+	High_confidence	133	135	149	7.913074	4.453001	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.953020
omental_fat_pad_male_adult_37_years	chrX	7147255	7147288	7147287	+	High_confidence	4	4	8	0.424863	2.750000	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147271	7147706	STRG.66679.1	+	7147271	7147706	0.875000
omental_fat_pad_male_adult_37_years	chr3	153553356	153553369	153553368	-	RAMPAGE_only	3	3	8	0.424863	3.000000	chr3	153553066	153553660	DNA|TcMar-Tigger|MER6A	-	chr3	153384933	153387368	LINC02006|ENST00000492569.1	-	153384933,153385867	153385390,153387368	0.875000
omental_fat_pad_male_adult_37_years	chr15	89677828	89677865	89677864	-	RAMPAGE_only	6	6	18	0.955942	3.572469	chr15	89677740	89678052	SINE|Alu|AluSx1	-	chr15	89664364	89679402	PLIN1|ENST00000300055.9	-	89664364,89666935,89667601,89669499,89669979,89671481,89673209,89677444,89679250	89665942,89667181,89667793,89669672,89670244,89671564,89673414,89677503,89679402	0.722222
omental_fat_pad_male_adult_37_years	chr12	16353939	16353965	16353939	+	High_confidence	13	15	39	2.071207	4.284901	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.743590
omental_fat_pad_male_adult_37_years	chr22	49657461	49657517	49657461	-	High_confidence	7	7	30	1.593236	4.386569	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.533333
omental_fat_pad_male_adult_37_years	chr19	47751067	47751103	47751095	+	High_confidence	4	4	16	0.849726	3.577820	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47750177	47757005	NOP53|ENST00000595143.5	+	47750177,47750907,47751519,47752511,47754526,47754708,47755783,47756527,47756687,47756998	47750286,47751107,47751590,47752607,47754631,47754757,47755822,47756604,47756744,47757005	0.687500
omental_fat_pad_male_adult_37_years	chr1	174874418	174874434	174874418	+	High_confidence	3	3	13	0.690402	3.251629	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.846154
omental_fat_pad_male_adult_37_years	chr5	151005773	151005780	151005779	+	RAMPAGE_only	5	5	10	0.531079	3.321928	chr5	151005650	151005821	SINE|MIR|MIRb	-	chr5	151020437	151028993	GPX3|NM_002084.3	+	151020437,151025339,151026899,151027431,151027908	151020741,151025493,151027017,151027531,151028993	0.900000
omental_fat_pad_male_adult_37_years	chr19	20423688	20423702	20423701	-	High_confidence	7	7	21	1.115265	3.784942	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20408949	20423694	STRG.60996.1	-	20408949,20423480	20409045,20423694	0.714286
omental_fat_pad_male_adult_37_years	chr15	75626289	75626305	75626304	-	High_confidence	3	3	7	0.371755	2.807355	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
omental_fat_pad_male_adult_37_years	chr13	47991641	47991680	47991649	-	RAMPAGE_only	49	78	204	10.834007	6.524960	chr13	47990978	47991673	LINE|L2|L2a	+	chr13	47942780	48001020	SUCLA2|ENST00000642944.1	-	47942780,47948939,47949482,47954139,47954395,47968594,47973263,47988540,47988881,47996842,48000906	47943445,47949028,47949603,47954282,47954557,47968733,47973392,47988703,47988981,47997023,48001020	0.950980
omental_fat_pad_male_adult_37_years	chr2	72693353	72693354	72693353	-	RAMPAGE_only	11	11	14	0.743510	2.873141	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.928571
omental_fat_pad_male_adult_37_years	chr9	92670319	92670362	92670350	+	High_confidence	4	4	21	1.115265	3.681881	chr9	92670392	92670512	SINE|MIR|MIRc	+	chr9	92670233	92671000	STRG.35436.1	+	92670233	92671000	0.809524
omental_fat_pad_male_adult_37_years	chr3	128626800	128626823	128626822	-	RAMPAGE_only	4	5	10	0.531079	2.921928	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	1.000000
omental_fat_pad_male_adult_37_years	chr6	106541219	106541243	106541219	+	High_confidence	3	3	7	0.371755	2.521641	chr6	106541083	106541354	DNA|hAT-Charlie|MER102c	-	chr6	106541133	106555897	CRYBG1|ENST00000457437.1	+	106541133,106541585,106543439,106544570,106544787,106551851,106552183,106553454,106555767	106541295,106541621,106543597,106544697,106544933,106551978,106552216,106553567,106555897	0.571429
omental_fat_pad_male_adult_37_years	chr14	85934677	85934705	85934700	+	High_confidence	5	5	18	0.955942	3.969816	chr14	85934517	85934812	LTR|ERV1|LTR12F	+	chr14	85934678	85935573	STRG.50819.1	+	85934678	85935573	0.611111
omental_fat_pad_male_adult_37_years	chr3	9879101	9879111	9879101	-	High_confidence	4	4	8	0.424863	2.750000	chr3	9879038	9879161	DNA|hAT-Charlie|MER3	+	chr3	9866709	9879056	CIDEC|NM_022094.3	-	9866709,9869881,9870163,9877065,9878433,9878941	9867296,9870069,9870322,9877219,9878511,9879056	1.000000
omental_fat_pad_male_adult_37_years	chr11	36062724	36062725	36062724	+	High_confidence	50	52	53	2.814718	5.283856	chr11	36062532	36062905	LTR|ERVL-MaLR|THE1C	+	chr11	36062107	36227429	STRG.40985.6	+	36062107,36098326,36227084	36081778,36102031,36227429	0.811321
omental_fat_pad_male_adult_37_years	chr15	44662607	44662623	44662607	-	RAMPAGE_only	2	2	10	0.531079	2.947703	chr15	44662388	44662674	SINE|Alu|AluJb	+	chr15	44563120	44663647	SPG11|ENST00000427534.6	-	44563120,44567423,44569397,44570524,44572682,44573546,44574901,44583813,44585635,44589251,44592330,44595258,44596082,44596783,44598264,44598630,44600466,44606024,44608443,44610839,44613429,44615362,44620189,44621758,44622219,44622727,44626330,44628668,44629232,44633504,44648865,44651490,44652128,44657094,44659078,44660431,44663390	44563301,44567592,44569505,44570658,44572820,44573745,44575041,44584558,44585850,44589414,44592438,44595459,44596355,44596943,44598373,44598836,44600632,44606091,44608605,44610985,44613536,44615566,44620403,44621934,44622347,44622799,44626507,44628844,44629388,44633637,44649011,44651939,44652266,44657296,44659303,44660616,44663647	0.900000
omental_fat_pad_male_adult_37_years	chr11	65444287	65444374	65444373	+	RAMPAGE_only	12	18	79	4.195522	5.429178	chr11	65444390	65444497	SINE|MIR|MIR1_Amn	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
omental_fat_pad_male_adult_37_years	chr13	40377079	40377122	40377091	-	High_confidence	3	3	17	0.902834	3.500000	chr13	40376963	40377218	LINE|L2|L2a	-	chr13	40341063	40377298	STRG.47729.3	-	40341063,40350108,40377050	40344205,40350302,40377298	0.764706
omental_fat_pad_male_adult_37_years	chr5	62553775	62553796	62553795	+	RAMPAGE_only	3	4	10	0.531079	2.947703	chr5	62553752	62554029	SINE|Alu|AluSx1	-	chr5	62578734	62628589	IPO11-LRRC70|NR_073584.1	+	62578734,62591576,62601763,62627153	62578935,62591672,62601848,62628589	0.600000
omental_fat_pad_male_adult_37_years	chr1	39026112	39026136	39026135	+	High_confidence	3	3	9	0.477971	3.000000	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.777778
omental_fat_pad_male_adult_37_years	chr11	10806170	10806195	10806194	-	High_confidence	4	4	9	0.477971	3.000000	chr11	10806178	10806347	DNA|hAT-Charlie|MER5A	-	chr11	10804291	10806263	EIF4G2|ENST00000532152.5	-	10804291,10804912,10805906	10804418,10805015,10806263	0.777778
omental_fat_pad_male_adult_37_years	chr10	35449689	35449725	35449724	+	RAMPAGE_only	24	32	124	6.585377	5.879359	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.637097
omental_fat_pad_male_adult_37_years	chr16	4355592	4355593	4355592	-	High_confidence	71	71	71	3.770659	5.419123	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.915493
omental_fat_pad_male_adult_37_years	chr10	79446860	79446869	79446860	-	RAMPAGE_only	8	8	20	1.062158	2.715327	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.950000
omental_fat_pad_male_adult_37_years	chr15	65244454	65244455	65244454	-	RAMPAGE_only	23	24	29	1.540128	4.110577	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.965517
omental_fat_pad_male_adult_37_years	chr9	111284874	111284875	111284874	-	High_confidence	14	14	21	1.115265	4.297079	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.666667
omental_fat_pad_male_adult_37_years	chr7	90154183	90154206	90154205	+	High_confidence	6	6	13	0.690402	3.546594	chr7	90154032	90154206	DNA|hAT-Charlie|MER5A	+	chr7	90154374	90164827	STEAP1|ENST00000297205.6	+	90154374,90159757,90160804,90161913,90164476	90154543,90159872,90161317,90162078,90164827	1.000000
omental_fat_pad_male_adult_37_years	chr4	128427967	128428006	128428005	+	High_confidence	8	8	13	0.690402	3.026987	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.615385
omental_fat_pad_male_adult_37_years	chrX	48683361	48683363	48683361	+	High_confidence	36	71	71	3.770659	4.855866	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.943662
omental_fat_pad_male_adult_37_years	chr19	3062922	3062983	3062922	-	High_confidence	19	21	74	3.929983	5.227649	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.959459
omental_fat_pad_male_adult_37_years	chr10	45000261	45000273	45000268	+	High_confidence	5	8	22	1.168373	4.186704	chr10	45000000	45000445	LINE|L2|L2	-	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.500000
omental_fat_pad_male_adult_37_years	chr7	6590251	6590300	6590278	+	High_confidence	5	5	39	2.071207	4.019831	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.923077
omental_fat_pad_male_adult_37_years	chr4	176380794	176380807	176380806	+	High_confidence	4	6	9	0.477971	2.947703	chr4	176380505	176381173	LTR|ERVL|MER76	-	chr4	176380812	176451355	STRG.19617.1	+	176380812,176419035,176450579	176381098,176419101,176451355	0.777778
omental_fat_pad_male_adult_37_years	chr3	14047205	14047219	14047205	-	High_confidence	20	21	39	2.071207	4.756619	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14038266	14047207	STRG.12365.1	-	14038266,14046812	14041628,14047207	0.794872
omental_fat_pad_male_adult_37_years	chr13	77475867	77475921	77475920	+	RAMPAGE_only	6	6	27	1.433913	3.825252	chr13	77474476	77476020	LTR|ERV1|LTR12C	-	chr13	77535673	77645263	SCEL|NM_144777.2	+	77535673,77555856,77556595,77559803,77563830,77567679,77568294,77569370,77572123,77589143,77591394,77593513,77597544,77599328,77599688,77602064,77602653,77603075,77604355,77608055,77609057,77610046,77612890,77613892,77617598,77617802,77618003,77627946,77634378,77637119,77640675,77642705,77644257	77535824,77555918,77556713,77559863,77563899,77567748,77568333,77569451,77572189,77589224,77591460,77593573,77597589,77599388,77599748,77602124,77602713,77603135,77604415,77608115,77609117,77610106,77612941,77613955,77617658,77617862,77618060,77628009,77634450,77637194,77640784,77642808,77645263	0.925926
omental_fat_pad_male_adult_37_years	chr5	96979767	96979837	96979809	+	RAMPAGE_only	2	3	17	0.902834	3.250000	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	0.941176
omental_fat_pad_male_adult_37_years	chr11	57568212	57568213	57568212	-	High_confidence	12	12	14	0.743510	3.392747	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	0.857143
omental_fat_pad_male_adult_37_years	chr11	108224074	108224075	108224074	+	High_confidence	15	15	19	1.009050	3.683542	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.894737
omental_fat_pad_male_adult_37_years	chr5	140700445	140700452	140700445	+	High_confidence	497	637	1142	60.649197	5.578459	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.976357
omental_fat_pad_male_adult_37_years	chr10	118322625	118322651	118322625	-	RAMPAGE_only	3	3	6	0.318647	2.584963	chr10	118322113	118322801	LINE|L1|L1MC4	+	chr10	118310635	118326349	FAM204A|ENST00000491416.5	-	118310635,118311206,118326153	118310908,118311313,118326349	1.000000
omental_fat_pad_male_adult_37_years	chr11	57426726	57426755	57426754	-	High_confidence	9	10	15	0.796618	3.664498	chr11	57426722	57426811	SINE|MIR|MIRb	-	chr11	57407405	57426752	SLC43A3|ENST00000529554.5	-	57407405,57409174,57409934,57414614,57414932,57416572,57417747,57420971,57421296,57423981,57425540,57425988,57426587	57407896,57409298,57410121,57414731,57415106,57416670,57417887,57421064,57421373,57424028,57425670,57426352,57426752	0.866667
omental_fat_pad_male_adult_37_years	chr3	11225914	11225928	11225914	-	High_confidence	2	4	7	0.371755	2.807355	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11193161	11225919	STRG.12294.1	-	11193161,11194992,11225699	11193887,11195204,11225919	1.000000
omental_fat_pad_male_adult_37_years	chr5	133089637	133089678	133089677	+	RAMPAGE_only	22	25	51	2.708502	5.028758	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.980392
omental_fat_pad_male_adult_37_years	chr9	128684435	128684480	128684476	-	High_confidence	6	6	34	1.805668	4.712319	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683729	128684470	STRG.36559.1	-	128683729	128684470	0.852941
omental_fat_pad_male_adult_37_years	chr10	89888015	89888054	89888015	+	RAMPAGE_only	8	8	33	1.752560	4.476064	chr10	89888002	89888814	LTR|ERV1|LTR8B	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.666667
omental_fat_pad_male_adult_37_years	chr17	59834048	59834049	59834048	+	RAMPAGE_only	10	11	11	0.584187	3.121928	chr17	59833955	59834256	SINE|Alu|AluSq2	-	chr17	59837627	59840223	VMP1|ENST00000591782.1	+	59837627,59838294,59839767	59837797,59838397,59840223	0.818182
omental_fat_pad_male_adult_37_years	chr17	79030180	79030205	79030180	+	RAMPAGE_only	8	8	24	1.274589	3.970573	chr17	79030152	79030319	LINE|L1|L1ME4a	-	chr17	79034184	79048247	C1QTNF1|ENST00000581774.5	+	79034184,79043954,79046554,79047537	79034533,79044123,79046694,79048247	0.875000
omental_fat_pad_male_adult_37_years	chr3	125123613	125123618	125123615	-	High_confidence	355	771	1055	56.028812	7.094661	chr3	125123512	125123811	LTR|ERVL-MaLR|THE1B	-	chr3	125107880	125123599	STRG.14921.10	-	125107880,125110188,125123529	125108126,125120686,125123599	0.822749
omental_fat_pad_male_adult_37_years	chr18	7946867	7946888	7946878	+	High_confidence	20	20	46	2.442962	4.631833	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.869565
omental_fat_pad_male_adult_37_years	chr5	176411458	176411459	176411458	-	RAMPAGE_only	28	33	39	2.071207	4.095969	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.948718
omental_fat_pad_male_adult_37_years	chr6	137218725	137218822	137218725	-	High_confidence	10	11	34	1.805668	4.597276	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.852941
omental_fat_pad_male_adult_37_years	chr9	84368680	84368706	84368698	-	High_confidence	11	14	48	2.549178	4.970176	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.666667
omental_fat_pad_male_adult_37_years	chr9	69171068	69171073	69171072	-	High_confidence	4	4	9	0.477971	2.725481	chr9	69170557	69171431	LINE|L2|L2b	+	chr9	69167317	69170824	STRG.34946.1	-	69167317,69170655	69167472,69170824	0.888889
omental_fat_pad_male_adult_37_years	chr6	6031080	6031095	6031080	+	High_confidence	3	3	10	0.531079	2.921928	chr6	6030096	6033184	LTR|ERV1|HERVH-int	-	chr6	6031218	6031496	STRG.23486.1	+	6031218	6031496	0.500000
omental_fat_pad_male_adult_37_years	chr8	16186271	16186273	16186271	-	High_confidence	9	17	21	1.115265	4.221928	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.904762
omental_fat_pad_male_adult_37_years	chr5	150640300	150640315	150640314	+	High_confidence	6	6	19	1.009050	4.142664	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.894737
omental_fat_pad_male_adult_37_years	chr2	207662375	207662376	207662375	+	High_confidence	8	8	8	0.424863	2.500000	chr2	207662277	207662604	LTR|ERVL-MaLR|MLT1A1	+	chr2	207662374	207667024	LINC01857|ENST00000429730.1	+	207662374,207666680	207662522,207667024	1.000000
omental_fat_pad_male_adult_37_years	chr17	42403692	42403828	42403692	-	RAMPAGE_only	11	11	57	3.027149	5.301931	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	1.000000
omental_fat_pad_male_adult_37_years	chr4	170226587	170226607	170226587	+	High_confidence	4	6	11	0.584187	2.913977	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.818182
omental_fat_pad_male_adult_37_years	chr11	86938472	86938475	86938474	-	RAMPAGE_only	6	9	12	0.637295	3.277613	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86892213	86922104	AP001528.2|ENST00000528660.1	-	86892213,86896412,86921235	86892372,86896540,86922104	0.916667
omental_fat_pad_male_adult_37_years	chr11	65437359	65437645	65437584	+	RAMPAGE_only	64	64	640	33.989042	5.833151	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998437
omental_fat_pad_male_adult_37_years	chr5	42175235	42175258	42175235	-	High_confidence	9	13	31	1.646344	4.118508	chr5	42175074	42175255	LTR|ERVL-MaLR|MSTC	-	chr5	42155832	42175345	LOC101926960|NR_104636.1	-	42155832,42159026,42159336,42175152	42157411,42159053,42159446,42175345	0.709677
omental_fat_pad_male_adult_37_years	chr6	30830589	30830605	30830604	-	High_confidence	3	3	6	0.318647	2.584963	chr6	30830591	30830730	LTR|Gypsy|MamGypLTR1b	-	chr6	30812865	30830659	LINC00243|NR_130726.1	-	30812865,30830514	30814772,30830659	0.500000
omental_fat_pad_male_adult_37_years	chr6	130978732	130978739	130978738	-	High_confidence	14	14	23	1.221481	3.880180	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.782609
omental_fat_pad_male_adult_37_years	chr2	201122662	201122663	201122662	+	RAMPAGE_only	22	22	26	1.380805	4.469670	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201118663	201160455	CFLAR|ENST00000439154.6	+	201118663,201129728,201133028,201135971,201140356,201142644,201145377,201149002,201149753,201160431	201118901,201130146,201133134,201136107,201140439,201142762,201145432,201149052,201149835,201160455	0.615385
omental_fat_pad_male_adult_37_years	chr3	188153195	188153225	188153195	+	High_confidence	4	4	9	0.477971	2.500000	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153874	188406278	LPP|ENST00000430340.5	+	188153874,188225404,188312834,188406111	188154021,188225527,188312918,188406278	0.777778
omental_fat_pad_male_adult_37_years	chr15	80059918	80059933	80059918	+	High_confidence	88	107	211	11.205762	5.959793	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.947867
omental_fat_pad_male_adult_37_years	chr5	115956529	115956676	115956529	+	High_confidence	229	242	2200	116.837332	7.505488	chr5	115956262	115957250	LINE|L2|L2b	-	chr5	115956546	115958564	STRG.21615.5	+	115956546,115958428	115956920,115958564	0.807727
omental_fat_pad_male_adult_37_years	chr19	9140393	9140428	9140427	+	High_confidence	86	86	316	16.782090	7.050691	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.693038
omental_fat_pad_male_adult_37_years	chr11	65441073	65441124	65441106	+	RAMPAGE_only	8	9	54	2.867825	4.862368	chr11	65440951	65441153	SINE|MIR|MIR	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.981481
omental_fat_pad_male_adult_37_years	chr2	85376881	85376882	85376881	+	High_confidence	282	294	363	19.278160	6.895012	chr2	85376136	85377036	LINE|L1|L1MDa	-	chr2	85376881	85390995	ELMOD3|ENST00000496957.1	+	85376881,85377343,85389750,85390137,85390759	85376916,85377474,85389827,85390265,85390995	0.779614
omental_fat_pad_male_adult_37_years	chr12	116661543	116661544	116661543	+	High_confidence	42	44	47	2.496070	4.719522	chr12	116660542	116661920	LTR|ERV1|LTR12C	+	chr12	116661581	116698065	AC125603.2|ENST00000546835.1	+	116661581,116697854	116662246,116698065	0.893617
omental_fat_pad_male_adult_37_years	chr12	8681719	8681743	8681736	+	High_confidence	8	8	33	1.752560	4.284684	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681690	8783095	RIMKLB|ENST00000544257.5	+	8681690,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783095	0.757576
omental_fat_pad_male_adult_37_years	chr21	28090339	28090398	28090339	+	High_confidence	61	70	244	12.958322	4.283314	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.979508
omental_fat_pad_male_adult_37_years	chr2	36513696	36513757	36513734	+	High_confidence	3	3	15	0.796618	3.506891	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.600000
omental_fat_pad_male_adult_37_years	chr12	8681599	8681600	8681599	+	High_confidence	32	35	47	2.496070	4.868107	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.744681
omental_fat_pad_male_adult_37_years	chr9	129489073	129489126	129489125	+	High_confidence	16	20	76	4.036199	5.458243	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.828947
omental_fat_pad_male_adult_37_years	chr3	14047155	14047156	14047155	-	High_confidence	41	41	56	2.974041	4.807457	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14038266	14047207	STRG.12365.1	-	14038266,14046812	14041628,14047207	0.875000
omental_fat_pad_male_adult_37_years	chr14	101819770	101819782	101819781	+	RAMPAGE_only	5	6	12	0.637295	2.918296	chr14	101819651	101819923	SINE|Alu|AluJb	-	chr14	101761861	101821098	PPP2R5C|ENST00000556068.5	+	101761861,101762904,101786017,101818026	101761920,101762970,101786183,101821098	0.750000
omental_fat_pad_male_adult_37_years	chr3	28347646	28347654	28347653	-	High_confidence	57	57	106	5.629435	5.773062	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.820755
omental_fat_pad_male_adult_37_years	chr3	153553430	153553445	153553444	-	RAMPAGE_only	6	6	11	0.584187	2.646439	chr3	153553066	153553660	DNA|TcMar-Tigger|MER6A	-	chr3	153384933	153387368	LINC02006|ENST00000492569.1	-	153384933,153385867	153385390,153387368	0.818182
omental_fat_pad_male_adult_37_years	chr14	53217601	53217615	53217614	+	High_confidence	5	6	14	0.743510	3.180833	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217711	53687258	AL365295.1|ENST00000456100.5	+	53217711,53318030,53369451,53687198	53218055,53318138,53369501,53687258	0.714286
omental_fat_pad_male_adult_37_years	chr6	140898410	140898430	140898429	-	High_confidence	14	17	81	4.301738	5.614800	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140892481	140898444	STRG.26358.2	-	140892481	140898444	0.703704
omental_fat_pad_male_adult_37_years	chrX	54998761	54998789	54998788	-	High_confidence	96	119	242	12.852107	6.137496	chrX	54998783	54998927	LINE|L1|L1ME4c	+	chrX	54933133	54998780	STRG.67362.2	-	54933133,54933820,54934946,54937594,54945438,54949074,54951904,54956152,54958305,54958850,54959826,54960823,54963256,54998405	54933462,54933885,54935009,54937724,54945543,54949221,54952112,54956274,54958362,54958925,54959893,54960917,54963382,54998780	0.871901
omental_fat_pad_male_adult_37_years	chr19	48868595	48868614	48868595	-	High_confidence	376	394	1652	87.734215	7.567477	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.990315
omental_fat_pad_male_adult_37_years	chr17	30968778	30968789	30968788	+	RAMPAGE_only	4	5	8	0.424863	2.500000	chr17	30968749	30968853	LINE|L2|L2	-	chr17	30967394	30999909	STRG.56941.13	+	30967394,30987943,30993839,30997241,30998661	30971445,30988106,30993904,30997331,30999909	0.875000
omental_fat_pad_male_adult_37_years	chr8	85378112	85378113	85378112	-	High_confidence	7	7	7	0.371755	2.807355	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	1.000000
omental_fat_pad_male_adult_37_years	chr3	9987152	9987163	9987162	+	High_confidence	4	4	10	0.531079	2.725481	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986936	9988345	STRG.12203.1	+	9986936	9988345	0.500000
omental_fat_pad_male_adult_37_years	chr6	159681539	159681674	159681576	-	RAMPAGE_only	7	10	82	4.354846	5.216994	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679115	159693228	STRG.26796.2	-	159679115,159680822,159684853,159688125,159692660,159693144	159680659,159682638,159685033,159688242,159692863,159693228	1.000000
omental_fat_pad_male_adult_37_years	chr3	187024754	187024774	187024754	+	High_confidence	2	2	10	0.531079	2.721928	chr3	187024583	187024927	LINE|L1|L1MC5a	+	chr3	187025478	187043084	ST6GAL1|ENST00000423451.5	+	187025478,187038741,187042653	187025517,187038873,187043084	0.700000
omental_fat_pad_male_adult_37_years	chr5	38881696	38881714	38881696	+	RAMPAGE_only	3	3	7	0.371755	2.521641	chr5	38881676	38881753	SINE|tRNA-Deu|AmnSINE2	+	chr5	38845998	38886739	OSMR|NM_001323504.1	+	38845998,38869031,38876200,38881592,38883826,38885348,38886038	38846387,38869117,38876373,38881764,38884111,38885484,38886739	1.000000
omental_fat_pad_male_adult_37_years	chr15	88635615	88635661	88635654	+	High_confidence	12	12	36	1.911884	4.436007	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303234.1	+	88635636,88636166,88639342,88652109,88655414	88635700,88636292,88639594,88652310,88656344	0.694444
omental_fat_pad_male_adult_37_years	chr19	4559444	4559453	4559444	-	High_confidence	4	4	9	0.477971	2.641604	chr19	4559320	4559418	LINE|CR1|L3	-	chr19	4542587	4559759	SEMA6B|NM_032108.3	-	4542587,4546215,4546391,4548026,4548262,4550122,4550798,4552421,4554387,4554975,4555473,4555987,4556950,4557162,4558025,4558336,4559529	4544529,4546274,4546469,4548173,4548445,4550272,4550930,4552639,4554476,4555095,4555564,4556089,4557013,4557223,4558149,4558489,4559759	0.666667
omental_fat_pad_male_adult_37_years	chr1	19344359	19344405	19344359	-	RAMPAGE_only	2	2	18	0.955942	3.616875	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.944444
omental_fat_pad_male_adult_37_years	chr11	65429216	65429369	65429305	+	RAMPAGE_only	22	23	129	6.850916	5.273760	chr11	65428987	65429477	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
omental_fat_pad_male_adult_37_years	chr2	120793967	120793968	120793967	+	RAMPAGE_only	7	7	7	0.371755	2.521641	chr2	120793847	120793996	SINE|MIR|MIRc	+	chr2	120792408	120992653	GLI2|ENST00000452319.5	+	120792408,120797290,120927360,120951242,120955244,120968713,120970392,120971940,120974923,120978433,120982715,120984470,120986277,120988207	120792438,120797468,120927466,120951445,120955430,120968915,120970606,120972063,120975109,120978583,120982880,120984743,120986614,120992653	0.714286
omental_fat_pad_male_adult_37_years	chr2	201116004	201116019	201116018	+	High_confidence	6	6	19	1.009050	3.090033	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	1.000000
omental_fat_pad_male_adult_37_years	chr9	39809852	39809865	39809864	-	High_confidence	5	5	18	0.955942	3.499228	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807380	39810058	GLIDR|ENST00000618092.2	-	39807380,39809730	39809633,39810058	0.500000
omental_fat_pad_male_adult_37_years	chr7	101217578	101217595	101217580	-	High_confidence	10	18	40	2.124315	4.887716	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.950000
omental_fat_pad_male_adult_37_years	chr2	11345436	11345442	11345436	-	High_confidence	37	42	100	5.310788	5.833798	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11179760	11345429	STRG.6596.2	-	11179760,11192450,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11192361,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345429	0.770000
omental_fat_pad_male_adult_37_years	chr1	110897815	110897876	110897875	+	RAMPAGE_only	8	8	25	1.327697	4.163856	chr1	110897898	110898002	SINE|MIR|MIR	+	chr1	110894308	110899851	CD53|ENST00000497404.1	+	110894308,110894959,110899123	110894401,110895055,110899851	0.880000
omental_fat_pad_male_adult_37_years	chr5	181060461	181060477	181060476	+	RAMPAGE_only	5	5	10	0.531079	2.921928	chr5	181060059	181060589	LINE|L1|L1MC4	+	chr5	181045462	181061523	STRG.23196.5	+	181045462,181047926,181050087,181053199,181053468,181054238,181055432,181055988,181058351	181045598,181048271,181050369,181053316,181053501,181054259,181055453,181056015,181061523	1.000000
omental_fat_pad_male_adult_37_years	chr5	102755977	102756014	102756013	-	High_confidence	4	5	13	0.690402	3.251629	chr5	102756006	102756131	SINE|MIR|MIRc	+	chr5	102755508	102756078	STRG.21444.1	-	102755508	102756078	0.846154
omental_fat_pad_male_adult_37_years	chr10	44977191	44977234	44977230	-	RAMPAGE_only	5	11	30	1.593236	4.168326	chr10	44977078	44977207	SINE|MIR|MIR	-	chr10	44976128	44978810	DEPP1|ENST00000298295.3	-	44976128,44978617	44978055,44978810	0.966667
omental_fat_pad_male_adult_37_years	chr3	64602350	64602382	64602350	-	RAMPAGE_only	3	3	8	0.424863	3.000000	chr3	64602281	64602411	LINE|L2|L2a	+	chr3	64521480	64616150	ADAMTS9|ENST00000481060.2	-	64521480,64522165,64533165,64539202,64541094,64541319,64541525,64541837,64546757,64550891,64561577,64568367,64594257,64596829,64601943,64603921,64604226,64606959,64613344,64615320,64615959	64521668,64522260,64533270,64539294,64541228,64541414,64541620,64541970,64546952,64551062,64561751,64568535,64594434,64596991,64602213,64604089,64604331,64607079,64613509,64615485,64616150	1.000000
omental_fat_pad_male_adult_37_years	chr6	79631273	79631329	79631328	+	High_confidence	83	97	262	13.914264	6.187763	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.992366
omental_fat_pad_male_adult_37_years	chr12	104864942	104865017	104864942	+	High_confidence	16	17	128	6.797808	5.625435	chr12	104863461	104865746	LINE|L1|HAL1	-	chr12	104864925	104871617	STRG.46628.1	+	104864925,104870161	104865071,104871617	0.875000
omental_fat_pad_male_adult_37_years	chr20	38985964	38985984	38985983	+	RAMPAGE_only	3	3	7	0.371755	2.521641	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962365	39038636	STRG.63638.3	+	38962365,38969080,38972586,38983698,38988812,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39038636	1.000000
omental_fat_pad_male_adult_37_years	chr19	53874846	53875004	53874902	+	RAMPAGE_only	32	32	173	9.187663	5.345305	chr19	53874763	53874953	SINE|Alu|AluSx	-	chr19	53869405	53876435	MYADM|ENST00000391769.2	+	53869405,53869753,53873527	53869598,53869838,53876435	0.988439
omental_fat_pad_male_adult_37_years	chr12	123390744	123390761	123390760	+	High_confidence	4	4	9	0.477971	2.750000	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.777778
omental_fat_pad_male_adult_37_years	chr11	123061191	123061328	123061256	-	High_confidence	93	97	346	18.375326	6.190286	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.956647
omental_fat_pad_male_adult_37_years	chr15	62570690	62570728	62570727	+	RAMPAGE_only	7	7	15	0.796618	3.773557	chr15	62570617	62570828	DNA|hAT-Charlie|MER20	-	chr15	62561364	62844631	TLN2|ENST00000561311.5	+	62561364,62589686,62647274,62650083,62652004,62653161,62655943,62657770,62673826,62675216,62686640,62692839,62694315,62697687,62698753,62701105,62701991,62702765,62707085,62708501,62711910,62716330,62717575,62719766,62722352,62724975,62727086,62736877,62738213,62739347,62740629,62748350,62750401,62752304,62753772,62755531,62761680,62762271,62763562,62766320,62770963,62776763,62781139,62783770,62792640,62796126,62797218,62800367,62800652,62805599,62809924,62819515,62820485,62833503,62835736,62835890,62838855,62840481	62561482,62589762,62647446,62650181,62652134,62653314,62656086,62657898,62673890,62675321,62686796,62692941,62694392,62697868,62698867,62701214,62702200,62702864,62707253,62708796,62712077,62716459,62717689,62719880,62722487,62725104,62727189,62737086,62738333,62739545,62740769,62748444,62750491,62752427,62753916,62755693,62761821,62762453,62763695,62766422,62771134,62776910,62781241,62783890,62792787,62796293,62797402,62800493,62800769,62805785,62810032,62819621,62820610,62833629,62835799,62836073,62838981,62844631	0.666667
omental_fat_pad_male_adult_37_years	chr1	26158899	26158900	26158899	+	High_confidence	9	9	11	0.584187	2.721928	chr1	26158769	26158905	SINE|MIR|MIR3	+	chr1	26159019	26163962	STRG.779.2	+	26159019,26161211	26160605,26163962	0.909091
omental_fat_pad_male_adult_37_years	chr12	102291794	102291796	102291795	+	RAMPAGE_only	28	36	44	2.336747	4.918528	chr12	102291614	102291972	LTR|ERVL-MaLR|THE1B	+	chr12	102304354	102463491	LINC02456|ENST00000635615.1	+	102304354,102304631,102315310,102348882,102423070,102462727	102304448,102304756,102315490,102348932,102423180,102463491	0.500000
omental_fat_pad_male_adult_37_years	chr18	80148048	80148049	80148048	+	High_confidence	14	15	15	0.796618	3.640224	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.933333
omental_fat_pad_male_adult_37_years	chr7	106285426	106285427	106285426	-	High_confidence	11	11	12	0.637295	3.277613	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106277055	106285612	NAMPT|ENST00000417537.1	-	106277055,106284827,106285540	106277179,106284931,106285612	0.666667
omental_fat_pad_male_adult_37_years	chr9	98943562	98943578	98943575	+	High_confidence	31	39	88	4.673493	5.763410	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.954545
omental_fat_pad_male_adult_37_years	chr16	8842265	8842287	8842286	+	High_confidence	2	2	6	0.318647	2.584963	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.666667
omental_fat_pad_male_adult_37_years	chr8	26366349	26366396	26366395	+	RAMPAGE_only	3	3	14	0.743510	3.467720	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	1.000000
omental_fat_pad_male_adult_37_years	chr4	141332616	141332617	141332616	-	High_confidence	128	128	131	6.957132	4.830649	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.961832
omental_fat_pad_male_adult_37_years	chr3	146222301	146222437	146222301	-	High_confidence	15	16	83	4.407954	5.625352	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146206586	146222371	PLSCR4|ENST00000498625.1	-	146206586,146220814,146222064	146206761,146220925,146222371	0.650602
omental_fat_pad_male_adult_37_years	chr5	172802860	172802861	172802860	+	High_confidence	364	377	393	20.871396	6.605586	chr5	172802673	172803064	LTR|ERVL-MaLR|MLT1B	+	chr5	172802848	172807431	STRG.23015.1	+	172802848	172807431	0.921120
omental_fat_pad_male_adult_37_years	chr17	56904535	56904560	56904535	-	High_confidence	2	2	11	0.584187	2.721928	chr17	56904513	56905129	LINE|L1|L1ME3C	+	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.545455
omental_fat_pad_male_adult_37_years	chr1	1655444	1655474	1655444	-	RAMPAGE_only	6	6	13	0.690402	3.392747	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.692308
omental_fat_pad_male_adult_37_years	chr15	85719295	85719323	85719322	+	RAMPAGE_only	4	4	16	0.849726	3.750000	chr15	85719357	85719584	SINE|MIR|MIRb	+	chr15	85717151	85727247	AKAP13|ENST00000558644.2	+	85717151,85718012,85719075,85721990,85722229,85723071,85726409,85727065	85717402,85718159,85719326,85722116,85722347,85723320,85726486,85727247	0.875000
omental_fat_pad_male_adult_37_years	chr15	74174534	74174572	74174571	+	High_confidence	7	9	26	1.380805	4.023465	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	0.923077
omental_fat_pad_male_adult_37_years	chr11	57568021	57568042	57568021	-	High_confidence	2	2	9	0.477971	2.503258	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551661	57567807	UBE2L6|ENST00000287156.8	-	57551661,57554436,57560336,57567584	57552509,57554623,57560432,57567807	0.888889
omental_fat_pad_male_adult_37_years	chr2	177499693	177499717	177499693	+	RAMPAGE_only	2	3	10	0.531079	2.725481	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.700000
omental_fat_pad_male_adult_37_years	chr4	184855611	184855685	184855652	-	RAMPAGE_only	27	29	137	7.275779	6.498478	chr4	184855538	184855766	LTR|ERVL-MaLR|MLT1J1	-	chr4	184843295	184847046	MIR3945HG|NR_037867.1	-	184843295,184846895	184846534,184847046	0.525547
omental_fat_pad_male_adult_37_years	chr3	33838239	33838257	33838256	+	RAMPAGE_only	4	4	9	0.477971	2.750000	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.666667
omental_fat_pad_male_adult_37_years	chr4	3929598	3929660	3929598	-	High_confidence	56	67	224	11.896165	6.207717	chr4	3927854	3930775	LTR|ERV1|HERVH-int	+	chr4	3919306	3929729	STRG.16794.1	-	3919306,3924070,3929541	3921782,3924267,3929729	0.799107
omental_fat_pad_male_adult_37_years	chr1	46804345	46804355	46804345	+	RAMPAGE_only	21	21	51	2.708502	4.976155	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.627451
omental_fat_pad_male_adult_37_years	chr21	14882004	14882005	14882004	-	RAMPAGE_only	16	16	16	0.849726	3.875000	chr21	14881808	14882178	LTR|ERVL-MaLR|MLT1A0	-	chr21	14873094	14883017	STRG.64361.1	-	14873094	14883017	0.687500
omental_fat_pad_male_adult_37_years	chr19	58312215	58312243	58312242	+	RAMPAGE_only	6	6	11	0.584187	2.921928	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.727273
omental_fat_pad_male_adult_37_years	chr12	31959178	31959179	31959178	+	High_confidence	5	5	8	0.424863	3.000000	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31981060	KIAA1551|ENST00000540924.5	+	31959407,31960776,31980877	31959491,31960871,31981060	0.625000
omental_fat_pad_male_adult_37_years	chr11	60182517	60182557	60182550	-	High_confidence	10	12	43	2.283639	5.088630	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60172019	60183030	STRG.41317.5	-	60172019,60173027,60175401,60178259,60179830,60181580,60182977	60172253,60173129,60175611,60178316,60179965,60181741,60183030	0.511628
omental_fat_pad_male_adult_37_years	chr2	203533429	203533456	203533429	-	High_confidence	8	8	24	1.274589	4.262692	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.708333
omental_fat_pad_male_adult_37_years	chr13	46374823	46374833	46374832	-	RAMPAGE_only	15	15	26	1.380805	4.023465	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46371940	46378645	RUBCNL|ENST00000439642.1	-	46371940,46377889,46378446	46372597,46378005,46378645	0.730769
omental_fat_pad_male_adult_37_years	chr16	81181327	81181331	81181330	-	High_confidence	37	37	59	3.133365	5.212986	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.881356
omental_fat_pad_male_adult_37_years	chr11	64226142	64226180	64226158	-	High_confidence	28	31	188	9.984281	6.557210	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.978723
omental_fat_pad_male_adult_37_years	chr11	5809252	5809253	5809252	-	High_confidence	130	136	178	9.453202	6.680271	chr11	5809115	5809640	LTR|ERV1|LTR10G	-	chr11	5794483	5809305	STRG.40155.11	-	5794483,5808365	5808308,5809305	0.758427
omental_fat_pad_male_adult_37_years	chr22	30971686	30971717	30971716	+	High_confidence	3	3	7	0.371755	2.521641	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.857143
omental_fat_pad_male_adult_37_years	chr7	73683420	73683446	73683420	-	High_confidence	25	25	69	3.664444	5.362190	chr7	73683365	73683430	LINE|RTE-BovB|MamRTE1	+	chr7	73680917	73683451	DNAJC30|NM_032317.2	-	73680917	73683451	0.971014
omental_fat_pad_male_adult_37_years	chr19	53498438	53498446	53498445	+	High_confidence	3	4	10	0.531079	2.725481	chr19	53497640	53498598	LTR|ERVK|LTR5B	+	chr19	53498256	53504241	STRG.62320.1	+	53498256,53503189	53498708,53504241	0.900000
omental_fat_pad_male_adult_37_years	chrX	5726193	5726240	5726193	-	High_confidence	30	32	63	3.345796	4.880556	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.761905
omental_fat_pad_male_adult_37_years	chr5	150779631	150779654	150779647	-	High_confidence	4	4	12	0.637295	3.095795	chr5	150779612	150779818	LINE|L2|L2a	+	chr5	150733383	150780376	STRG.22727.6	-	150733383,150742113,150753478,150756416,150779414,150779906	150733475,150742157,150753657,150756487,150779551,150780376	0.666667
omental_fat_pad_male_adult_37_years	chr2	200588166	200588170	200588166	+	High_confidence	4	6	11	0.584187	2.921928	chr2	200587906	200588390	LINE|L2|L2a	-	chr2	200588173	200603297	AOX1|ENST00000454629.1	+	200588173,200593145,200595271,200597396,200599619,200602283,200603266	200588270,200593203,200595368,200597505,200599746,200602345,200603297	0.636364
omental_fat_pad_male_adult_37_years	chr5	77088097	77088175	77088107	+	High_confidence	15	25	99	5.257680	5.806286	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088058	77148523	ZBED3-AS1|ENST00000513591.5	+	77088058,77098654,77100235,77118319,77147651	77088472,77098747,77100391,77118521,77148523	0.606061
omental_fat_pad_male_adult_37_years	chr5	173790892	173790936	173790930	-	High_confidence	4	4	19	1.009050	3.794653	chr5	173790732	173790899	DNA|hAT-Tip100|MER115	-	chr5	173786927	173790925	LINC01485|ENST00000523617.5	-	173786927,173787688,173790635,173790808	173787247,173787745,173790727,173790925	0.684211
omental_fat_pad_male_adult_37_years	chr11	58578102	58578133	58578102	-	High_confidence	12	13	55	2.920933	5.057638	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.581818
omental_fat_pad_male_adult_37_years	chr2	102142232	102142262	102142232	+	High_confidence	2	2	11	0.584187	2.921928	chr2	102142163	102142293	SINE|MIR|MIR	-	chr2	102142305	102165162	IL1R1|ENST00000442590.5	+	102142305,102153940,102157718,102164773,102165114	102142455,102154017,102157785,102165008,102165162	0.727273
omental_fat_pad_male_adult_37_years	chr9	20658303	20658322	20658312	+	High_confidence	8	8	22	1.168373	3.845351	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.818182
omental_fat_pad_male_adult_37_years	chr2	191682575	191682603	191682575	+	RAMPAGE_only	4	4	17	0.902834	3.852169	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191685076	STRG.10521.10	+	191678989,191681945,191684229	191679128,191683804,191685076	0.882353
omental_fat_pad_male_adult_37_years	chr5	43658695	43658696	43658695	+	High_confidence	11	12	15	0.796618	2.835238	chr5	43658390	43659054	LINE|L1|L1MEb	-	chr5	43658733	43704744	STRG.20351.3	+	43658733,43659170,43675510,43677724,43700118,43702620,43704254	43658953,43659350,43675670,43677806,43700237,43702736,43704744	0.933333
omental_fat_pad_male_adult_37_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	18	18	18	0.955942	3.419382	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
omental_fat_pad_male_adult_37_years	chr8	16193012	16193013	16193012	-	High_confidence	6	7	7	0.371755	2.584963	chr8	16192904	16193159	SINE|Alu|AluSc8	-	chr8	16139316	16192791	MSR1|NM_002445.3	-	16139316,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16192597	16141045,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16192791	0.571429
omental_fat_pad_male_adult_37_years	chr4	2867841	2867851	2867850	+	High_confidence	7	8	13	0.690402	3.392747	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.923077
omental_fat_pad_male_adult_37_years	chr2	231072235	231072255	231072254	+	RAMPAGE_only	3	3	9	0.477971	3.169925	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.888889
omental_fat_pad_male_adult_37_years	chr11	96299709	96299727	96299709	-	High_confidence	6	6	10	0.531079	3.121928	chr11	96299412	96299893	LTR|ERVL|LTR16C	+	chr11	95978754	96299018	STRG.42689.2	-	95978754,95985530,95991519,96091891,96229756,96271457	95979963,95985642,95991723,96093517,96271394,96299018	0.500000
omental_fat_pad_male_adult_37_years	chr1	179118677	179118745	179118677	-	RAMPAGE_only	2	2	22	1.168373	3.721928	chr1	179118593	179118709	LINE|RTE-BovB|MamRTE1	-	chr1	179107717	179143044	ABL2|ENST00000504405.5	-	179107717,179109207,179110281,179112308,179114877,179117331,179118586,179120189,179121594,179126376,179131310,179142932	179108898,179109441,179110455,179112398,179115030,179117516,179118764,179120274,179121867,179126672,179131481,179143044	0.772727
omental_fat_pad_male_adult_37_years	chr12	13098877	13098894	13098893	+	High_confidence	24	25	38	2.018099	4.326466	chr12	13098875	13099050	DNA|hAT-Tip100|Arthur1A	+	chr12	13098732	13099268	STRG.44412.1	+	13098732	13099268	0.684211
omental_fat_pad_male_adult_37_years	chr10	46269606	46269610	46269606	-	High_confidence	5	5	11	0.584187	2.921928	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.818182
omental_fat_pad_male_adult_37_years	chr2	223944060	223944081	223944060	+	High_confidence	9	11	19	1.009050	3.932138	chr2	223944006	223944148	DNA|hAT-Charlie|MER113	+	chr2	223944065	223967714	STRG.11371.2	+	223944065,223959533,223963755,223966862	223944407,223960002,223963934,223967714	0.894737
omental_fat_pad_male_adult_37_years	chr12	55840038	55840074	55840073	-	High_confidence	4	5	22	1.168373	3.684184	chr12	55840044	55840305	SINE|Alu|AluJb	+	chr12	55836425	55840034	MMP19|ENST00000547685.5	-	55836425,55837554,55837842,55838499,55839495	55837374,55837682,55838007,55838734,55840034	0.863636
omental_fat_pad_male_adult_37_years	chr11	77175252	77175303	77175302	+	High_confidence	19	20	141	7.488211	6.100318	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175227	77213918	STRG.42112.1	+	77175227,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353,77197480,77198494,77199648,77201447,77202299,77203059,77204075,77205461,77206096,77207288,77208429,77208696,77211151,77211820,77212951,77213859	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194524,77197598,77198621,77199818,77201638,77202424,77203217,77204229,77205617,77206202,77207402,77208517,77208803,77211337,77211937,77213035,77213918	0.964539
omental_fat_pad_male_adult_37_years	chr8	65979196	65979197	65979196	+	RAMPAGE_only	16	16	22	1.168373	3.879664	chr8	65979005	65979377	LTR|ERVL-MaLR|THE1B	+	chr8	66021555	66100520	DNAJC5B|NM_033105.4	+	66021555,66043487,66051530,66076659,66080376,66099936	66021705,66043611,66051666,66076873,66080548,66100520	0.909091
omental_fat_pad_male_adult_37_years	chr1	51403418	51403453	51403418	-	RAMPAGE_only	3	3	18	0.955942	2.939829	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.944444
omental_fat_pad_male_adult_37_years	chr16	27341051	27341083	27341051	+	RAMPAGE_only	3	3	12	0.637295	2.913977	chr16	27340733	27341390	LINE|L2|L2a	-	chr16	27313933	27363903	IL4R|ENST00000568746.5	+	27313933,27340185,27341069,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27314020,27340273,27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27363903	0.833333
omental_fat_pad_male_adult_37_years	chr7	88283813	88283856	88283855	-	RAMPAGE_only	3	3	10	0.531079	3.169925	chr7	88283844	88283877	LINE|RTE-BovB|MamRTE1	-	chr7	88270891	88306880	STRG.29538.1	-	88270891,88280914,88282640,88283813,88290915,88306791	88279628,88281079,88283168,88284271,88291014,88306880	0.900000
omental_fat_pad_male_adult_37_years	chr3	9973632	9973633	9973632	-	RAMPAGE_only	8	8	10	0.531079	2.947703	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.900000
omental_fat_pad_male_adult_37_years	chr12	55838239	55838439	55838333	-	RAMPAGE_only	19	22	104	5.523219	5.579632	chr12	55838181	55838440	DNA|hAT-Tip100|MamTip3	-	chr12	55836800	55842922	STRG.45483.6	-	55836800,55837554,55837842,55839495,55840666,55841105,55842743	55837374,55837682,55838734,55839741,55840882,55842438,55842922	0.865385
omental_fat_pad_male_adult_37_years	chr19	58306086	58306087	58306086	+	High_confidence	13	13	13	0.690402	3.546594	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306086	58315202	STRG.62611.8	+	58306086,58312196	58306216,58315202	0.846154
omental_fat_pad_male_adult_37_years	chr16	53445764	53445781	53445780	+	High_confidence	3	3	12	0.637295	3.277613	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.666667
omental_fat_pad_male_adult_37_years	chr19	38376013	38376030	38376013	+	RAMPAGE_only	5	5	17	0.902834	4.087463	chr19	38375972	38376110	SINE|MIR|MIR	-	chr19	38374758	38383824	PSMD8|ENST00000602911.5	+	38374758,38376159,38376351,38379239,38380898,38382116,38383252	38374961,38376232,38376454,38379405,38380999,38382228,38383824	1.000000
omental_fat_pad_male_adult_37_years	chr9	71686285	71686286	71686285	-	RAMPAGE_only	28	30	32	1.699452	4.056565	chr9	71686096	71686602	DNA|hAT-Charlie|MER1A	+	chr9	71683570	71687428	CEMIP2|ENST00000538669.1	-	71683570,71685742	71685393,71687428	0.906250
omental_fat_pad_male_adult_37_years	chr1	12084289	12084295	12084289	+	RAMPAGE_only	18	21	37	1.964991	4.614859	chr1	12084124	12084342	LINE|L2|L2	-	chr1	12063469	12143117	TNFRSF8|ENST00000514649.5	+	12063469,12097100,12104378,12109565,12110040,12111897,12115576,12123283,12123714,12125950,12126182,12135587,12138231,12142286	12063661,12097217,12104531,12109656,12110204,12112014,12115729,12123377,12123827,12126052,12126236,12135613,12138436,12143117	0.675676
omental_fat_pad_male_adult_37_years	chr20	45833293	45833308	45833293	-	High_confidence	5	5	16	0.849726	3.189898	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.937500
omental_fat_pad_male_adult_37_years	chr14	77076158	77076194	77076188	-	High_confidence	9	9	29	1.540128	4.450212	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77073906	77076333	STRG.50736.1	-	77073906,77076104	77074598,77076333	0.689655
omental_fat_pad_male_adult_37_years	chr5	142621153	142621198	142621153	-	High_confidence	44	44	76	4.036199	5.461422	chr5	142620934	142621256	LINE|L2|L2c	+	chr5	142592177	142621342	FGF1|ENST00000359370.10	-	142592177,142600701,142613958,142621296	142595484,142600805,142614161,142621342	0.631579
omental_fat_pad_male_adult_37_years	chr12	46266488	46266516	46266488	-	High_confidence	4	4	15	0.796618	3.640224	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.800000
omental_fat_pad_male_adult_37_years	chr2	43482900	43482904	43482900	-	RAMPAGE_only	5	5	12	0.637295	3.095795	chr2	43482863	43483049	SINE|MIR|MIRc	-	chr2	43344156	43463259	THADA|ENST00000485353.5	-	43344156,43397970,43428099,43430212,43463033	43344237,43398139,43428231,43430302,43463259	0.833333
omental_fat_pad_male_adult_37_years	chr3	45076475	45076476	45076475	+	High_confidence	4	4	7	0.371755	2.521641	chr3	45076354	45076709	LTR|ERVL-MaLR|THE1A	+	chr3	45076879	45083461	STRG.13143.2	+	45076879,45082256	45078609,45083461	0.857143
omental_fat_pad_male_adult_37_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	37	41	47	2.496070	4.871388	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.787234
omental_fat_pad_male_adult_37_years	chr2	218287216	218287280	218287279	-	High_confidence	8	10	20	1.062158	3.921928	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.650000
omental_fat_pad_male_adult_37_years	chrX	71198191	71198196	71198195	-	High_confidence	7	7	14	0.743510	3.546594	chrX	71198068	71198187	SINE|MIR|MIR3	-	chrX	71183558	71198175	AL590764.1|ENST00000450860.1	-	71183558,71197908	71184017,71198175	0.785714
omental_fat_pad_male_adult_37_years	chr3	151766780	151766781	151766780	+	RAMPAGE_only	10	12	12	0.637295	3.251629	chr3	151766184	151766973	LINE|L1|L1MC3	-	chr3	151770455	151784894	AADACP1|NR_026915.1	+	151770455,151775694,151783831	151770611,151775764,151784894	0.500000
omental_fat_pad_male_adult_37_years	chr15	90467508	90467521	90467508	+	RAMPAGE_only	3	3	11	0.584187	3.321928	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.636364
omental_fat_pad_male_adult_37_years	chrX	103431649	103431650	103431649	+	High_confidence	14	17	21	1.115265	4.121928	chrX	103431274	103435037	LTR|ERV1|HERVH-int	-	chrX	103431652	103431978	STRG.68314.2	+	103431652	103431978	0.714286
omental_fat_pad_male_adult_37_years	chr5	77088373	77088374	77088373	+	High_confidence	4	4	7	0.371755	2.521641	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088058	77148533	ZBED3-AS1|ENST00000646953.1	+	77088058,77118319,77147651	77088472,77118521,77148533	0.571429
omental_fat_pad_male_adult_37_years	chr14	77736978	77736979	77736978	-	High_confidence	7	7	9	0.477971	2.947703	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.555556
omental_fat_pad_male_adult_37_years	chr1	196404228	196404273	196404272	-	High_confidence	68	108	225	11.949273	6.056897	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225877	196404259	STRG.4815.1	-	196225877,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404259	0.733333
omental_fat_pad_male_adult_37_years	chr16	68267936	68267937	68267936	+	RAMPAGE_only	72	74	75	3.983091	5.540402	chr16	68267617	68268452	LTR|ERVL|MER21B	+	chr16	68266601	68297433	STRG.55360.5	+	68266601,68273817,68274690,68287322,68290395,68291208,68291557,68294704,68296363,68296626,68297233	68266721,68273904,68275249,68287871,68290540,68291332,68291661,68294801,68296513,68296810,68297433	0.853333
omental_fat_pad_male_adult_37_years	chr2	9554940	9554966	9554953	-	High_confidence	6	6	29	1.540128	3.850420	chr2	9554869	9555063	DNA|hAT-Tip100?|MamRep1879	-	chr2	9489810	9555700	STRG.6543.3	-	9489810,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526244,9527954,9535922,9536828,9555700	1.000000
omental_fat_pad_male_adult_37_years	chr5	55982737	55982801	55982800	-	High_confidence	6	11	26	1.380805	3.973661	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.961538
omental_fat_pad_male_adult_37_years	chr6	127330937	127330966	127330937	-	High_confidence	2	2	8	0.424863	2.807355	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.750000
omental_fat_pad_male_adult_37_years	chr9	13386132	13386133	13386132	+	RAMPAGE_only	21	22	29	1.540128	4.450212	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.827586
omental_fat_pad_male_adult_37_years	chr7	107580245	107580267	107580245	+	High_confidence	660	666	2939	156.084054	7.400687	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.928887
omental_fat_pad_male_adult_37_years	chr16	30445873	30445877	30445873	-	High_confidence	94	138	203	10.780899	6.680821	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.955665
omental_fat_pad_male_adult_37_years	chrX	20204049	20204066	20204049	-	RAMPAGE_only	9	9	22	1.168373	3.246439	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.909091
omental_fat_pad_male_adult_37_years	chr1	176162936	176162964	176162936	-	RAMPAGE_only	5	5	12	0.637295	3.418296	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.583333
omental_fat_pad_male_adult_37_years	chr5	43658741	43658765	43658741	+	High_confidence	3	3	13	0.690402	3.180833	chr5	43658390	43659054	LINE|L1|L1MEb	-	chr5	43658733	43704744	STRG.20351.3	+	43658733,43659170,43675510,43677724,43700118,43702620,43704254	43658953,43659350,43675670,43677806,43700237,43702736,43704744	1.000000
omental_fat_pad_male_adult_37_years	chr21	41426079	41426090	41426079	+	High_confidence	3	3	12	0.637295	3.251629	chr21	41426026	41426113	DNA|hAT-Charlie|MER5A	-	chr21	41426030	41459214	MX1|NM_002462.4	+	41426030,41427205,41427754,41430532,41432049,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41426263,41427304,41427866,41430608,41432175,41436029,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	0.916667
omental_fat_pad_male_adult_37_years	chr8	143281669	143281687	143281686	-	High_confidence	30	34	98	5.204572	5.296602	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.836735
omental_fat_pad_male_adult_37_years	chr16	2757786	2757811	2757810	+	High_confidence	7	7	33	1.752560	4.413910	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.969697
omental_fat_pad_male_adult_37_years	chr7	131108707	131108708	131108707	-	RAMPAGE_only	60	61	67	3.558228	5.556758	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944159	131109916	LINC-PINT|NR_109854.1	-	130944159,130945719,130984052,131052424,131107719,131109736	130944889,130945791,130984109,131052555,131108803,131109916	0.970149
omental_fat_pad_male_adult_37_years	chr3	11226015	11226026	11226025	+	High_confidence	25	25	45	2.389855	4.747191	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.733333
omental_fat_pad_male_adult_37_years	chr2	200888597	200888598	200888597	-	High_confidence	9	10	13	0.690402	2.661226	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	1.000000
omental_fat_pad_male_adult_37_years	chr6	26474335	26474346	26474345	+	RAMPAGE_only	5	5	11	0.584187	2.721928	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.545455
omental_fat_pad_male_adult_37_years	chr19	58306115	58306142	58306115	+	High_confidence	13	13	32	1.699452	3.813307	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306086	58315202	STRG.62611.8	+	58306086,58312196	58306216,58315202	0.531250
omental_fat_pad_male_adult_37_years	chr5	96958618	96958644	96958618	+	High_confidence	5	5	14	0.743510	3.546594	chr5	96958521	96958817	LTR|ERVL-MaLR|MLT1D	-	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	0.928571
omental_fat_pad_male_adult_37_years	chr5	42175290	42175291	42175290	-	High_confidence	29	30	30	1.593236	3.866433	chr5	42175074	42175255	LTR|ERVL-MaLR|MSTC	-	chr5	42155832	42175345	LOC101926960|NR_104636.1	-	42155832,42159026,42159336,42175152	42157411,42159053,42159446,42175345	0.500000
omental_fat_pad_male_adult_37_years	chr6	144533089	144533106	144533105	+	RAMPAGE_only	3	3	9	0.477971	2.500000	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.888889
omental_fat_pad_male_adult_37_years	chr12	7502490	7502544	7502503	-	High_confidence	19	28	142	7.541319	6.047873	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.950704
omental_fat_pad_male_adult_37_years	chr17	35366949	35366950	35366949	-	High_confidence	6	6	6	0.318647	2.584963	chr17	35366789	35367087	SINE|Alu|AluJb	+	chr17	35363621	35367294	SLFN11|ENST00000589562.1	-	35363621,35366946	35363826,35367294	0.833333
omental_fat_pad_male_adult_37_years	chr3	139344537	139344573	139344547	+	High_confidence	13	13	40	2.124315	4.609389	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.875000
omental_fat_pad_male_adult_37_years	chr11	71999607	71999642	71999614	+	High_confidence	13	21	50	2.655394	4.933661	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.920000
omental_fat_pad_male_adult_37_years	chr22	18149863	18149869	18149868	+	High_confidence	31	31	90	4.779709	4.942705	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.922222
omental_fat_pad_male_adult_37_years	chr14	102235448	102235462	102235451	-	High_confidence	3	3	13	0.690402	3.418296	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.692308
omental_fat_pad_male_adult_37_years	chr4	3927750	3927751	3927750	+	High_confidence	11	11	11	0.584187	3.095795	chr4	3927445	3927854	LTR|ERV1|LTR7	+	chr4	3927767	3928074	STRG.16797.1	+	3927767	3928074	0.545455
omental_fat_pad_male_adult_37_years	chr1	161207491	161207494	161207493	+	RAMPAGE_only	5	9	11	0.584187	2.913977	chr1	161207484	161207755	SINE|Alu|AluSz	+	chr1	161209238	161214239	NDUFS2|ENST00000483804.5	+	161209238,161209482,161209856,161210110,161210303,161210590,161212350,161212591,161213379,161213648,161213863,161214155	161209313,161209595,161209931,161210188,161210389,161210710,161212480,161212654,161213475,161213732,161213921,161214239	0.545455
omental_fat_pad_male_adult_37_years	chr14	35294401	35294473	35294442	+	RAMPAGE_only	7	7	30	1.593236	4.681728	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	0.900000
omental_fat_pad_male_adult_37_years	chr16	72073244	72073245	72073244	+	RAMPAGE_only	25	25	25	1.327697	4.163856	chr16	72072861	72073376	LTR|ERV1|LTR10B	+	chr16	72063228	72077246	HPR|ENST00000561690.1	+	72063228,72073891,72074283,72075144,72076302,72076955	72063260,72073977,72074385,72075219,72076350,72077246	0.840000
omental_fat_pad_male_adult_37_years	chr12	10553364	10553365	10553364	+	High_confidence	7	8	8	0.424863	2.521641	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.750000
omental_fat_pad_male_adult_37_years	chr19	51027648	51027668	51027667	-	High_confidence	6	6	11	0.584187	2.921928	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.909091
omental_fat_pad_male_adult_37_years	chr6	6033288	6033289	6033288	-	High_confidence	38	38	38	2.018099	4.543852	chr6	6033186	6033600	LTR|ERV1|LTR7	-	chr6	6032806	6033087	STRG.23488.1	-	6032806	6033087	0.868421
omental_fat_pad_male_adult_37_years	chr3	134485443	134485490	134485443	-	High_confidence	14	16	59	3.133365	4.976474	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.762712
omental_fat_pad_male_adult_37_years	chr9	98943459	98943484	98943483	+	High_confidence	15	15	24	1.274589	4.175736	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.958333
omental_fat_pad_male_adult_37_years	chrX	103431536	103431550	103431536	+	High_confidence	5	5	18	0.955942	3.734522	chrX	103431274	103435037	LTR|ERV1|HERVH-int	-	chrX	103431652	103431978	STRG.68314.2	+	103431652	103431978	0.833333
omental_fat_pad_male_adult_37_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	16	16	16	0.849726	3.577820	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
omental_fat_pad_male_adult_37_years	chr2	227534926	227534933	227534932	+	RAMPAGE_only	25	26	45	2.389855	5.058984	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.888889
omental_fat_pad_male_adult_37_years	chr3	69237176	69237183	69237176	-	RAMPAGE_only	2	2	11	0.584187	3.321928	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69169989	69386073	FRMD4B|ENST00000398540.7	-	69169989,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69195230,69196254,69196899,69198697,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69385827	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195141,69195364,69196396,69197038,69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69386073	0.727273
omental_fat_pad_male_adult_37_years	chr12	9065160	9065170	9065160	+	High_confidence	2	3	9	0.477971	2.725481	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.888889
omental_fat_pad_male_adult_37_years	chr14	95516107	95516123	95516107	+	High_confidence	12	12	51	2.708502	5.053286	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.901961
omental_fat_pad_male_adult_37_years	chr6	54072322	54072323	54072322	+	High_confidence	148	154	164	8.709692	5.407374	chr6	54071763	54072467	LTR|ERV1|LTR26	+	chr6	54072330	54073576	STRG.24860.1	+	54072330	54073576	0.981707
omental_fat_pad_male_adult_37_years	chr20	3795750	3795835	3795750	+	High_confidence	20	24	124	6.585377	6.150774	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.983871
omental_fat_pad_male_adult_37_years	chr4	128570542	128570565	128570542	-	High_confidence	7	7	13	0.690402	3.084963	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.923077
omental_fat_pad_male_adult_37_years	chr2	237123956	237123957	237123956	+	RAMPAGE_only	26	26	33	1.752560	4.390320	chr2	237123788	237124183	LTR|ERVL-MaLR|MLT1A1	+	chr2	237119903	237124451	STRG.11687.1	+	237119903	237124451	0.636364
omental_fat_pad_male_adult_37_years	chr11	65434368	65434928	65434588	+	RAMPAGE_only	30	38	617	32.767561	7.138886	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
omental_fat_pad_male_adult_37_years	chr20	33812318	33812339	33812325	-	High_confidence	9	9	23	1.221481	4.088779	chr20	33812158	33812326	SINE|MIR|MIR3	+	chr20	33811929	33812309	STRG.63455.1	-	33811929	33812309	0.739130
omental_fat_pad_male_adult_37_years	chr14	91462209	91462216	91462209	-	High_confidence	5	10	18	0.955942	3.499228	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.833333
omental_fat_pad_male_adult_37_years	chr9	73168448	73168549	73168548	+	High_confidence	16	16	74	3.929983	5.076017	chr9	73168349	73168625	LINE|L2|L2c	-	chr9	73168097	73170393	ANXA1|ENST00000491192.1	+	73168097,73170050	73169154,73170393	0.986486
omental_fat_pad_male_adult_37_years	chr8	39082997	39083066	39083065	+	RAMPAGE_only	5	5	22	1.168373	4.004886	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.681818
omental_fat_pad_male_adult_37_years	chr9	33394066	33394067	33394066	-	High_confidence	14	15	18	0.955942	3.836592	chr9	33394009	33394115	LINE|L2|L2b	+	chr9	33385505	33394176	AQP7|ENST00000447660.3	-	33385505,33386076,33386403,33393796	33385866,33386195,33386541,33394176	0.888889
omental_fat_pad_male_adult_37_years	chr9	90992088	90992092	90992088	-	High_confidence	22	23	37	1.964991	4.777021	chr9	90991840	90992378	LTR|ERVL|MER68	-	chr9	90991738	90992078	STRG.35277.1	-	90991738	90992078	0.540541
omental_fat_pad_male_adult_37_years	chr8	143018389	143018434	143018389	-	High_confidence	2	2	15	0.796618	3.906891	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.800000
omental_fat_pad_male_adult_37_years	chr2	96303181	96303210	96303181	-	RAMPAGE_only	3	3	10	0.531079	2.725481	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.900000
omental_fat_pad_male_adult_37_years	chr9	104778992	104778993	104778992	-	RAMPAGE_only	17	17	24	1.274589	4.022055	chr9	104778526	104779393	LINE|L2|L2a	+	chr9	104777033	104780932	STRG.35822.1	-	104777033	104780932	0.916667
omental_fat_pad_male_adult_37_years	chr1	161196561	161196624	161196561	-	RAMPAGE_only	2	3	15	0.796618	3.378783	chr1	161196461	161196536	DNA|hAT-Tip100|MER91C	-	chr1	161189728	161199053	ADAMTS4|NM_005099.5	-	161189728,161192064,161193212,161193639,161193934,161195464,161196170,161196556,161197994	161191564,161192240,161193388,161193826,161194221,161195635,161196303,161196880,161199053	0.933333
omental_fat_pad_male_adult_37_years	chr11	117185994	117186040	117186006	+	High_confidence	13	13	62	3.292688	5.402480	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.822581
omental_fat_pad_male_adult_37_years	chr10	102449836	102449839	102449836	+	High_confidence	5	5	10	0.531079	2.921928	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.800000
omental_fat_pad_male_adult_37_years	chr12	109266967	109267157	109267156	+	RAMPAGE_only	15	16	150	7.966182	5.502550	chr12	109266905	109267170	SINE|Alu|AluSx1	-	chr12	109139396	109268223	ACACB|ENST00000377848.7	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260479,109262356,109264231,109265109,109265388,109266235	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260657,109262469,109264386,109265280,109265525,109268223	1.000000
omental_fat_pad_male_adult_37_years	chr11	93734971	93734972	93734971	-	High_confidence	6	7	7	0.371755	2.584963	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730282	93734661	TAF1D|ENST00000525928.5	-	93730282,93730676,93731149,93731752,93732243,93733086,93733349	93730447,93730712,93731216,93731799,93732291,93733121,93734661	0.714286
omental_fat_pad_male_adult_37_years	chr14	50756741	50756742	50756741	-	RAMPAGE_only	15	15	21	1.115265	3.784184	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.952381
omental_fat_pad_male_adult_37_years	chr1	1575373	1575375	1575374	-	High_confidence	56	70	98	5.204572	6.040581	chr1	1575374	1575512	LINE|L2|L2	-	chr1	1541672	1574882	SSU72|NM_014188.2	-	1541672,1543868,1544862,1564772,1574477	1542167,1543987,1545002,1564916,1574882	0.571429
omental_fat_pad_male_adult_37_years	chr20	50267474	50267502	50267477	+	High_confidence	97	131	476	25.279350	6.134961	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.987395
omental_fat_pad_male_adult_37_years	chr16	8842153	8842215	8842153	+	High_confidence	6	6	39	2.071207	4.199132	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.897436
omental_fat_pad_male_adult_37_years	chr12	124355447	124355454	124355447	-	RAMPAGE_only	4	5	9	0.477971	2.750000	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124324415	124422554	NCOR2|ENST00000356219.7	-	124324415,124326190,124327408,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124398118,124400500,124402403,124419956,124422500	124325583,124326370,124327633,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362297,124363799,124372610,124374463,124378384,124385887,124398181,124400673,124402561,124420055,124422554	0.888889
omental_fat_pad_male_adult_37_years	chr1	52914041	52914057	52914041	-	RAMPAGE_only	4	4	8	0.424863	3.000000	chr1	52913984	52914299	LINE|L2|L2b	-	chr1	52913719	52921721	ECHDC2|ENST00000474789.1	-	52913719,52921552	52914095,52921721	0.625000
omental_fat_pad_male_adult_37_years	chr17	77127872	77127877	77127872	+	High_confidence	28	28	48	2.549178	5.251629	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.666667
omental_fat_pad_male_adult_37_years	chr14	38948245	38948246	38948245	-	High_confidence	5	5	8	0.424863	2.807355	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	0.875000
omental_fat_pad_male_adult_37_years	chr16	72014393	72014419	72014418	+	High_confidence	5	5	13	0.690402	3.084963	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.769231
omental_fat_pad_male_adult_37_years	chr21	14963691	14963723	14963722	-	RAMPAGE_only	3	4	12	0.637295	3.277613	chr21	14963616	14963778	DNA|hAT-Charlie|MER5A	-	chr21	14961234	15064805	NRIP1|ENST00000318948.6	-	14961234,15014343,15043494,15064744	14968526,15014466,15043574,15064805	0.916667
omental_fat_pad_male_adult_37_years	chr5	32403145	32403236	32403145	-	RAMPAGE_only	5	5	32	1.699452	4.256565	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.937500
omental_fat_pad_male_adult_37_years	chr5	87393437	87393447	87393443	-	RAMPAGE_only	6	6	18	0.955942	3.381580	chr5	87393353	87393555	SINE|MIR|MIR	-	chr5	87376252	87399451	CCNH|ENST00000646883.1	-	87376252,87392769,87395043,87399393	87376518,87392904,87395104,87399451	0.555556
omental_fat_pad_male_adult_37_years	chrY	4036475	4036542	4036501	+	High_confidence	4	4	17	0.902834	3.875000	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	0.823529
omental_fat_pad_male_adult_37_years	chr5	154038408	154038409	154038408	-	High_confidence	6	6	8	0.424863	2.807355	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	153991702	154038866	FAM114A2|ENST00000522858.5	-	153991702,153994918,153997802,154002250,154002846,154011240,154026398,154027175,154028148,154029488,154033790,154034277,154034743,154038292	153993110,153994972,153997875,154002390,154002969,154011320,154026522,154027334,154028283,154029580,154033883,154034377,154034967,154038866	0.750000
omental_fat_pad_male_adult_37_years	chr4	128570452	128570500	128570487	-	High_confidence	10	10	51	2.708502	4.958563	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.980392
omental_fat_pad_male_adult_37_years	chr1	70948345	70948346	70948345	+	High_confidence	11	11	11	0.584187	3.277613	chr1	70948171	70948531	LTR|ERVL-MaLR|THE1C	+	chr1	70947378	70966061	STRG.2284.1	+	70947378,70950734,70950900,70961047,70964845	70947475,70950793,70950994,70961258,70966061	0.545455
omental_fat_pad_male_adult_37_years	chr2	227655829	227655830	227655829	+	High_confidence	17	17	20	1.062158	3.616349	chr2	227655846	227656319	LTR|ERVL-MaLR|MLT1C	+	chr2	227655745	227656173	STRG.11440.1	+	227655745	227656173	0.750000
omental_fat_pad_male_adult_37_years	chr17	72992967	72992969	72992967	-	High_confidence	20	25	30	1.593236	4.418157	chr17	72992805	72993163	LTR|ERVL-MaLR|THE1B	-	chr17	72648922	72992933	SLC39A11|ENST00000582769.5	-	72648922,72649169,72736649,72849633,72947730,72992890	72648961,72649268,72736719,72849804,72947875,72992933	0.566667
omental_fat_pad_male_adult_37_years	chr12	105762150	105762156	105762150	+	High_confidence	91	112	149	7.913074	5.766889	chr12	105761978	105762330	LTR|ERVL-MaLR|MLT1A1	+	chr12	105762857	105763331	STRG.46639.1	+	105762857	105763331	0.879195
omental_fat_pad_male_adult_37_years	chr3	129586589	129586644	129586589	-	RAMPAGE_only	4	8	19	1.009050	3.239098	chr3	129586391	129586559	LINE|L2|L2c	-	chr3	129555212	129606739	PLXND1|NM_015103.2	-	129555212,129556616,129557082,129558427,129559619,129560329,129560688,129561645,129561799,129562786,129563093,129565339,129565886,129566526,129567491,129567697,129569842,129570785,129571039,129571508,129571676,129572608,129572841,129573593,129574335,129575468,129575765,129578328,129583566,129584124,129584384,129585951,129586171,129586587,129589350,129605328	129556428,129556691,129557223,129558575,129559783,129560434,129560723,129561709,129561903,129562943,129563240,129565538,129566017,129566631,129567604,129567805,129569957,129570935,129571303,129571599,129571844,129572748,129572941,129573745,129574490,129575562,129575855,129578433,129583669,129584233,129584562,129586081,129586272,129586719,129589527,129606739	0.947368
omental_fat_pad_male_adult_37_years	chr1	86703067	86703113	86703112	+	RAMPAGE_only	18	20	64	3.398904	5.238609	chr1	86702882	86703173	SINE|Alu|AluSz	+	chr1	86704569	86748184	SH3GLB1|NM_016009.4	+	86704569,86715723,86719506,86722539,86724312,86734601,86735078,86742207,86743127	86704971,86715865,86719635,86722673,86724405,86734691,86735179,86742436,86748184	0.828125
omental_fat_pad_male_adult_37_years	chr2	29114163	29114174	29114173	+	High_confidence	8	8	18	0.955942	3.969816	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.500000
omental_fat_pad_male_adult_37_years	chr12	50033444	50033482	50033444	-	High_confidence	3	3	11	0.584187	3.027169	chr12	50033334	50033456	LINE|L2|L2c	-	chr12	50005255	50033136	RACGAP1|ENST00000548247.1	-	50005255,50016630,50031696,50032969	50005392,50016719,50031867,50033136	0.818182
omental_fat_pad_male_adult_37_years	chr6	127330835	127330866	127330853	-	High_confidence	4	4	13	0.690402	3.022055	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.923077
omental_fat_pad_male_adult_37_years	chr17	4736360	4736404	4736361	-	High_confidence	40	64	167	8.869016	4.537536	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.958084
omental_fat_pad_male_adult_37_years	chr1	229198313	229198314	229198313	-	RAMPAGE_only	8	8	12	0.637295	2.688722	chr1	229198281	229198400	SINE|MIR|MIR3	-	chr1	229092814	229094905	AL137793.1|ENST00000433734.1	-	229092814,229094780	229093288,229094905	0.750000
omental_fat_pad_male_adult_37_years	chr2	229586868	229586903	229586868	-	High_confidence	7	7	37	1.964991	4.683542	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229580153	229587177	DNER|ENST00000482831.1	-	229580153,229585857,229586693	229580344,229586024,229587177	0.648649
omental_fat_pad_male_adult_37_years	chr7	74664437	74664475	74664474	+	RAMPAGE_only	4	4	9	0.477971	2.750000	chr7	74664429	74664732	SINE|Alu|AluSz	-	chr7	74658030	74717066	GTF2I|ENST00000443166.5	+	74658030,74689123,74690972,74698960,74700246,74700605,74705163,74706389,74711031,74716893	74658068,74689227,74691111,74699095,74700430,74700634,74705218,74706433,74711109,74717066	0.666667
omental_fat_pad_male_adult_37_years	chr1	153967486	153967508	153967486	+	High_confidence	4	4	17	0.902834	3.146286	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.764706
omental_fat_pad_male_adult_37_years	chr5	39402056	39402057	39402056	-	RAMPAGE_only	8	8	8	0.424863	2.500000	chr5	39401916	39402251	LTR|ERVL-MaLR|THE1B	-	chr5	39373020	39394400	DAB2|ENST00000509337.5	-	39373020,39375013,39375996,39376649,39381453,39382617,39388798,39389096,39389851,39390443,39392364,39393253,39394229	39373425,39375084,39376106,39377282,39381616,39383271,39388852,39389123,39389932,39390575,39392463,39393393,39394400	0.750000
omental_fat_pad_male_adult_37_years	chr1	112332715	112332716	112332715	-	RAMPAGE_only	7	9	9	0.477971	2.947703	chr1	112332676	112332755	DNA|hAT-Charlie|MER5A	+	chr1	112229833	112360528	STRG.3117.1	-	112229833,112238069,112360361	112234899,112238198,112360528	0.555556
omental_fat_pad_male_adult_37_years	chr6	36505070	36505091	36505070	-	RAMPAGE_only	13	13	40	2.124315	4.599379	chr6	36505057	36505226	DNA|hAT-Charlie|MER5B	+	chr6	36493891	36547470	STK38|ENST00000229812.7	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540207,36547470	0.975000
omental_fat_pad_male_adult_37_years	chr14	32075864	32075880	32075876	+	High_confidence	6	6	22	1.168373	4.121928	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32075821	32154827	STRG.49300.4	+	32075821,32090501,32117142,32146262,32149901,32152422,32154620	32076217,32094386,32117287,32146340,32150033,32152528,32154827	0.772727
omental_fat_pad_male_adult_37_years	chr9	73080414	73080447	73080444	-	High_confidence	10	12	47	2.496070	5.232159	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.914894
omental_fat_pad_male_adult_37_years	chr8	18063185	18063206	18063185	-	High_confidence	4	5	17	0.902834	3.875000	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.941176
omental_fat_pad_male_adult_37_years	chr8	109380015	109380016	109380015	+	RAMPAGE_only	9	9	12	0.637295	2.792481	chr8	109378677	109380056	LTR|ERVL|ERVL-E-int	+	chr8	109362476	109531271	PKHD1L1|NM_177531.4	+	109362476,109364546,109381369,109382462,109384069,109385536,109388496,109389078,109390451,109394414,109396026,109398458,109400075,109401496,109404553,109404994,109406334,109408048,109409864,109412264,109413420,109419096,109420517,109425084,109427001,109429339,109429931,109433105,109435189,109436337,109438323,109438896,109440709,109441274,109442006,109442945,109443675,109444660,109448142,109449337,109450974,109452123,109452717,109454166,109454722,109456261,109459594,109461771,109464215,109466577,109475117,109476507,109477224,109479550,109479990,109481432,109482986,109485043,109486647,109489951,109490971,109491872,109493660,109496918,109497149,109498461,109498654,109504326,109507662,109508096,109510776,109515169,109518166,109522185,109522743,109523232,109526783,109530079	109362653,109364636,109381514,109382571,109384127,109385630,109388550,109389152,109390494,109394485,109396137,109398548,109400344,109401588,109404713,109405130,109406478,109408206,109409978,109412414,109413545,109419260,109420690,109425232,109427156,109429462,109430037,109433216,109435354,109436459,109438456,109439092,109440852,109441379,109442195,109443116,109443902,109445645,109448391,109449487,109451149,109452280,109452874,109454246,109454852,109456391,109459836,109461908,109465245,109466769,109475269,109476667,109477396,109479639,109480139,109481562,109483105,109485173,109486821,109490055,109491101,109491994,109493751,109497067,109497272,109498573,109498771,109504492,109507895,109508264,109510934,109515305,109518508,109522337,109522890,109523386,109527020,109531271	1.000000
omental_fat_pad_male_adult_37_years	chr11	86955969	86956005	86955969	-	High_confidence	8	8	49	2.602286	5.206547	chr11	86955862	86955972	SINE|MIR|MIRb	+	chr11	86945674	86955398	FZD4|NM_012193.3	-	86945674,86954800	86952470,86955398	0.857143
omental_fat_pad_male_adult_37_years	chr16	8843593	8843611	8843593	+	RAMPAGE_only	4	4	9	0.477971	2.500000	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.777778
omental_fat_pad_male_adult_37_years	chr9	110057755	110057756	110057755	+	RAMPAGE_only	18	18	25	1.327697	3.923856	chr9	110057711	110057876	DNA|hAT-Charlie|MER5A1	+	chr9	110048697	110168633	STRG.35925.10	+	110048697,110136126,110168398	110125596,110138539,110168633	1.000000
omental_fat_pad_male_adult_37_years	chr21	45832793	45832818	45832806	+	High_confidence	2	2	8	0.424863	2.521641	chr21	45832710	45833077	LTR|ERVL-MaLR|THE1D	-	chr21	45832695	45833417	STRG.65208.1	+	45832695	45833417	0.500000
omental_fat_pad_male_adult_37_years	chrX	104189941	104189967	104189966	+	RAMPAGE_only	5	5	10	0.531079	2.721928	chrX	104189898	104190084	DNA|hAT-Charlie|MER5A	+	chrX	104186117	104191446	FAM199X|ENST00000299906.5	+	104186117,104186459,104188039,104189607	104186215,104186621,104188177,104191446	1.000000
omental_fat_pad_male_adult_37_years	chr5	77088058	77088062	77088061	+	High_confidence	13	14	31	1.646344	4.220168	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088058	77148523	ZBED3-AS1|ENST00000513591.5	+	77088058,77098654,77100235,77118319,77147651	77088472,77098747,77100391,77118521,77148523	0.838710
omental_fat_pad_male_adult_37_years	chr12	127060613	127060614	127060613	+	High_confidence	23	27	27	1.433913	3.954530	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060514	127119951	STRG.47153.1	+	127060514,127119553	127061334,127119951	0.888889
omental_fat_pad_male_adult_37_years	chr1	1721636	1721672	1721636	-	High_confidence	5	6	15	0.796618	3.664498	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.600000
omental_fat_pad_male_adult_37_years	chr21	34511289	34511346	34511345	-	High_confidence	3	3	14	0.743510	3.324863	chr21	34511313	34511427	LTR|ERVL-MaLR|MSTD	+	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.928571
omental_fat_pad_male_adult_37_years	chr5	142621239	142621240	142621239	-	High_confidence	11	11	15	0.796618	3.324863	chr5	142620934	142621256	LINE|L2|L2c	+	chr5	142592177	142621342	FGF1|ENST00000359370.10	-	142592177,142600701,142613958,142621296	142595484,142600805,142614161,142621342	0.533333
omental_fat_pad_male_adult_37_years	chr12	118139096	118139097	118139096	+	High_confidence	7	7	7	0.371755	2.521641	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.857143
omental_fat_pad_male_adult_37_years	chr3	8559165	8559199	8559198	+	RAMPAGE_only	7	7	18	0.955942	3.947703	chr3	8559235	8559355	SINE|MIR|MIRc	+	chr3	8501887	8567621	STRG.12172.3	+	8501887,8514924,8532736,8537184,8548567,8549873	8501980,8514995,8532825,8537440,8548903,8567621	1.000000
omental_fat_pad_male_adult_37_years	chr4	48012935	48012966	48012935	-	High_confidence	6	7	31	1.646344	4.389365	chr4	48012591	48013262	LTR|ERV1|MER4-int	-	chr4	47935976	48012944	CNGA1|NM_000087.3	-	47935976,47940762,47942040,47943180,47943370,47949832,47951352,47952582,47981392,48010793,48012888	47937829,47940869,47942148,47943288,47943412,47949895,47951469,47952703,47981500,48010893,48012944	0.677419
omental_fat_pad_male_adult_37_years	chr11	65429787	65430816	65430775	+	RAMPAGE_only	63	67	1349	71.642528	7.283384	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.999259
omental_fat_pad_male_adult_37_years	chr20	1467667	1467700	1467679	-	High_confidence	15	16	53	2.814718	4.316713	chr20	1467673	1468159	LTR|ERV1|LTR10B	+	chr20	1442161	1467692	NSFL1C|ENST00000216879.8	-	1442161,1445665,1452492,1453030,1454212,1454966,1458199,1464328,1466719	1443911,1445830,1452630,1453140,1454305,1455132,1458274,1464426,1467692	1.000000
omental_fat_pad_male_adult_37_years	chr2	227871048	227871054	227871053	+	High_confidence	83	93	136	7.222671	5.637342	chr2	227871080	227871251	SINE|MIR|MIR	+	chr2	227871053	227924344	DAW1|ENST00000373666.6	+	227871053,227885350,227889855,227891254,227893794,227898181,227903001,227904928,227906235,227907137,227912253,227918779,227921398,227923933	227871729,227885423,227890000,227891313,227893917,227898281,227903109,227905035,227906338,227907252,227912469,227918856,227921561,227924344	0.985294
omental_fat_pad_male_adult_37_years	chr1	147225865	147225866	147225865	-	High_confidence	15	15	16	0.849726	3.506891	chr1	147225754	147226210	LTR|ERV1|LTR2C	-	chr1	147213358	147225873	FMO5|ENST00000533848.2	-	147213358,147215753,147224894,147225728	147213470,147215942,147225066,147225873	0.750000
omental_fat_pad_male_adult_37_years	chr1	32637312	32637313	32637312	-	RAMPAGE_only	9	9	11	0.584187	2.721928	chr1	32637281	32637581	SINE|Alu|AluSx3	+	chr1	32631826	32634522	ZBTB8OS|ENST00000473383.1	-	32631826,32633644,32633950	32631879,32633727,32634522	0.909091
omental_fat_pad_male_adult_37_years	chr2	223944130	223944140	223944130	+	High_confidence	61	74	187	9.931173	6.956767	chr2	223944006	223944148	DNA|hAT-Charlie|MER113	+	chr2	223944065	223967714	STRG.11371.2	+	223944065,223959533,223963755,223966862	223944407,223960002,223963934,223967714	0.604278
omental_fat_pad_male_adult_37_years	chr17	59892716	59892746	59892716	-	High_confidence	5	5	15	0.796618	3.039149	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.800000
omental_fat_pad_male_adult_37_years	chr9	127874880	127874881	127874880	-	High_confidence	141	142	144	7.647534	6.249317	chr9	127874829	127874913	SINE|MIR|MIR3	+	chr9	127867998	127875007	AK1|ENST00000373156.5	-	127867998,127868320,127871822,127872689,127873025,127874610,127874876	127868076,127868512,127871939,127872853,127873061,127874649,127875007	0.819444
omental_fat_pad_male_adult_37_years	chr16	760819	760821	760819	+	High_confidence	37	47	59	3.133365	4.749970	chr16	760734	760840	SINE|MIR|MIRc	-	chr16	760766	768865	MSLN|ENST00000566549.5	+	760766,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766667,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	0.949153
omental_fat_pad_male_adult_37_years	chr1	160263344	160263354	160263353	-	High_confidence	3	3	8	0.424863	2.521641	chr1	160263341	160263646	SINE|Alu|AluSz	+	chr1	160215714	160262560	DCAF8|NM_015726.3	-	160215714,160218323,160218848,160222650,160224441,160225061,160225590,160231296,160237134,160238606,160239696,160243959,160261284,160262448	160217708,160218440,160218968,160222781,160224549,160225119,160225663,160231407,160237229,160238747,160240370,160244034,160261358,160262560	0.875000
omental_fat_pad_male_adult_37_years	chr1	6208681	6208682	6208681	-	High_confidence	90	90	90	4.779709	4.172417	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
omental_fat_pad_male_adult_37_years	chr8	2727253	2727264	2727263	+	High_confidence	4	4	8	0.424863	2.750000	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.625000
omental_fat_pad_male_adult_37_years	chr12	111870	111876	111873	-	High_confidence	4	4	16	0.849726	3.500000	chr12	110820	111833	LTR|ERV1|HERVP71A-int	-	chr12	106523	111850	AC026369.3|ENST00000540226.1	-	106523,111618	106877,111850	0.875000
omental_fat_pad_male_adult_37_years	chr9	127451006	127451128	127451104	-	High_confidence	4	4	38	2.018099	4.414994	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.894737
omental_fat_pad_male_adult_37_years	chr8	61578141	61578142	61578141	+	High_confidence	731	739	748	39.724693	6.223985	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.983957
omental_fat_pad_male_adult_37_years	chr14	73463610	73463630	73463624	-	RAMPAGE_only	80	87	152	8.072398	6.186966	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73275106	73458617	NUMB|ENST00000554546.5	-	73275106,73282358,73284080,73287109,73292733,73297210,73323129,73355625,73366896,73409936,73458492	73277293,73282505,73284374,73287314,73292874,73297285,73323204,73355766,73366981,73410068,73458617	0.644737
omental_fat_pad_male_adult_37_years	chr11	65439264	65439367	65439360	+	RAMPAGE_only	37	39	131	6.957132	5.794463	chr11	65439400	65439684	SINE|Alu|AluSz6	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
omental_fat_pad_male_adult_37_years	chr1	183590910	183590926	183590910	-	High_confidence	16	17	40	2.124315	4.649115	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.700000
omental_fat_pad_male_adult_37_years	chr11	17224996	17225018	17224996	+	RAMPAGE_only	4	4	11	0.584187	2.721928	chr11	17224821	17225165	LINE|L2|L2a	+	chr11	17260339	17349980	NUCB2|ENST00000646648.1	+	17260339,17269184,17276007,17282788,17295323,17296103,17301743,17309571,17310824,17311184,17311871,17312027,17315385,17330126,17330901,17337347,17349344	17260501,17269331,17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17337534,17349980	0.909091
omental_fat_pad_male_adult_37_years	chr9	19126413	19126436	19126424	-	RAMPAGE_only	8	13	42	2.230531	5.011365	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19108556	19127475	STRG.33997.1	-	19108556,19116358,19118320,19119649,19120879,19123564,19126113,19126396,19127418	19108747,19116649,19118455,19119831,19121165,19123647,19126309,19126448,19127475	0.904762
omental_fat_pad_male_adult_37_years	chr12	53464815	53464838	53464815	+	RAMPAGE_only	2	2	9	0.477971	3.000000	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.777778
omental_fat_pad_male_adult_37_years	chr18	50843101	50843112	50843101	-	RAMPAGE_only	6	6	23	1.221481	3.845351	chr18	50842925	50843332	LTR|ERVL|MLT2D	-	chr18	50798376	50825402	MRO|ENST00000428869.6	-	50798376,50800035,50801348,50805153,50806703,50809301,50816123,50819580,50825308	50799390,50800143,50801504,50805336,50806850,50809404,50816162,50819702,50825402	0.869565
omental_fat_pad_male_adult_37_years	chr12	132761238	132761256	132761238	-	High_confidence	3	3	9	0.477971	2.503258	chr12	132761047	132761359	LINE|L2|L2	+	chr12	132725667	132761813	ANKLE2|ENST00000539605.5	-	132725667,132728031,132729678,132734384,132735405,132736892,132741418,132743153,132747831,132748137,132750642,132754674	132727443,132728163,132730270,132734575,132735512,132737065,132741485,132743276,132748020,132748331,132750849,132761813	1.000000
omental_fat_pad_male_adult_37_years	chr17	59619894	59619929	59619894	+	High_confidence	845	979	3431	182.213131	6.001013	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.945788
omental_fat_pad_male_adult_37_years	chr13	45206631	45206634	45206633	+	High_confidence	17	26	32	1.699452	4.168244	chr13	45206646	45206717	SINE|MIR|MIRb	+	chr13	45206354	45267333	GTF2F2|ENST00000494087.5	+	45206354,45252870,45267232	45207505,45252970,45267333	0.843750
omental_fat_pad_male_adult_37_years	chr2	24887158	24887185	24887184	-	RAMPAGE_only	29	30	44	2.336747	4.701376	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24841324	24878027	ADCY3|ENST00000433852.1	-	24841324,24841555,24842253,24872569,24877921	24841386,24841667,24842384,24872719,24878027	0.909091
omental_fat_pad_male_adult_37_years	chr11	108223500	108223517	108223516	+	High_confidence	4	4	12	0.637295	3.188722	chr11	108223533	108223589	SINE|MIR|MIR	+	chr11	108223528	108229364	ATM|ENST00000526567.5	+	108223528,108227594,108227775,108229177	108223686,108227696,108227888,108229364	0.500000
omental_fat_pad_male_adult_37_years	chr11	112176364	112176366	112176365	+	High_confidence	20	24	33	1.752560	4.415458	chr11	112176309	112176508	LINE|L2|L2c	-	chr11	112176365	112218929	BCO2|NM_001256397.1	+	112176365,112179277,112193473,112193878,112194652,112199698,112200612,112202022,112213723,112214761,112216219,112217760	112176458,112179482,112193697,112193994,112194755,112199827,112200773,112202190,112213861,112214926,112216330,112218929	1.000000
omental_fat_pad_male_adult_37_years	chr4	122700441	122700442	122700441	+	High_confidence	314	317	364	19.331268	7.246371	chr4	122700197	122700669	LTR|ERVL|MER70A	+	chr4	122700450	122707367	STRG.18906.1	+	122700450	122707367	0.807692
omental_fat_pad_male_adult_37_years	chr10	265360	265386	265385	+	High_confidence	8	11	34	1.805668	4.577820	chr10	265297	265501	LTR|ERV1|LTR56	-	chr10	265556	266555	STRG.36824.1	+	265556	266555	0.911765
omental_fat_pad_male_adult_37_years	chr22	49657346	49657356	49657348	-	High_confidence	32	51	98	5.204572	5.510824	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.836735
omental_fat_pad_male_adult_37_years	chr14	95481761	95481773	95481761	-	RAMPAGE_only	19	26	65	3.452012	5.456955	chr14	95481614	95481737	LTR|ERVL|LTR33A_	-	chr14	95443660	95475836	SYNE3|ENST00000553340.1	-	95443660,95445908,95449930,95452246,95455376,95457176,95465930,95467794,95475677	95444628,95446091,95450105,95452383,95455724,95457338,95466240,95467967,95475836	0.938462
omental_fat_pad_male_adult_37_years	chr9	92536601	92536704	92536601	-	High_confidence	51	60	234	12.427244	6.351362	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.905983
omental_fat_pad_male_adult_37_years	chr12	24909657	24909689	24909657	-	RAMPAGE_only	4	4	21	1.115265	3.916127	chr12	24909448	24909699	LTR|ERVL-MaLR|MLT1C	-	chr12	24810023	24903075	BCAT1|NM_001178093.1	-	24810023,24829822,24832722,24836510,24842081,24849785,24878529,24881300,24894274,24901813,24902946	24818049,24829897,24832863,24836596,24842224,24849949,24878649,24881411,24894475,24901885,24903075	0.952381
omental_fat_pad_male_adult_37_years	chr1	162781230	162781309	162781286	+	RAMPAGE_only	3	3	19	1.009050	3.576618	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	1.000000
omental_fat_pad_male_adult_37_years	chr6	31587201	31587275	31587201	+	High_confidence	16	17	91	4.832817	5.220702	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.967033
omental_fat_pad_male_adult_37_years	chr1	111473767	111473799	111473798	+	High_confidence	4	4	14	0.743510	3.521641	chr1	111473535	111473833	SINE|Alu|AluYm1	+	chr1	111473791	111478512	C1orf162|ENST00000343534.9	+	111473791,111476017,111476797,111477333,111477650,111477982	111474030,111476065,111476867,111477428,111477775,111478512	0.714286
omental_fat_pad_male_adult_37_years	chr20	51526030	51526031	51526030	-	RAMPAGE_only	4	6	6	0.318647	2.584963	chr20	51525529	51526222	LINE|L2|L2b	+	chr20	51386956	51542719	NFATC2|NM_012340.4	-	51386956,51398642,51432066,51435187,51435705,51454547,51473979,51475457,51516783,51523080,51542369	51391451,51398730,51432756,51435314,51435761,51454688,51474152,51475660,51516955,51524110,51542719	1.000000
omental_fat_pad_male_adult_37_years	chr10	62056853	62056854	62056853	+	RAMPAGE_only	4	4	7	0.371755	2.584963	chr10	62056749	62056941	DNA|hAT-Charlie|MER58A	+	chr10	62049210	62096948	ARID5B|NM_001244638.1	+	62049210,62050887,62057116,62059242,62069699,62085701,62090861	62049483,62051000,62057318,62059295,62069797,62085900,62096948	0.857143
omental_fat_pad_male_adult_37_years	chr3	37058886	37058907	37058886	-	RAMPAGE_only	4	4	11	0.584187	2.913977	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	1.000000
omental_fat_pad_male_adult_37_years	chr3	138347835	138347836	138347835	+	High_confidence	4	4	6	0.318647	2.584963	chr3	138347598	138347891	SINE|Alu|AluSx	-	chr3	138347696	138405533	MRAS|ENST00000289104.8	+	138347696,138372865,138397323,138398468,138400533,138402169	138348325,138373076,138397477,138398568,138400613,138405533	1.000000
omental_fat_pad_male_adult_37_years	chr10	118322343	118322379	118322378	-	RAMPAGE_only	25	26	70	3.717551	5.268359	chr10	118322113	118322801	LINE|L1|L1MC4	+	chr10	118310635	118326349	FAM204A|ENST00000491416.5	-	118310635,118311206,118326153	118310908,118311313,118326349	0.771429
omental_fat_pad_male_adult_37_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	12	12	18	0.955942	3.454822	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.666667
omental_fat_pad_male_adult_37_years	chr4	55947926	55948011	55948010	-	High_confidence	10	17	62	3.292688	5.479757	chr4	55947862	55947994	LTR|ERV1|MER51D	-	chr4	55938295	55947954	STRG.17759.1	-	55938295,55940516,55947839	55938955,55940632,55947954	0.774194
omental_fat_pad_male_adult_37_years	chr14	81170372	81170414	81170402	-	High_confidence	10	10	48	2.549178	4.766939	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.895833
omental_fat_pad_male_adult_37_years	chr1	99661449	99661450	99661449	+	RAMPAGE_only	17	17	19	1.009050	4.142664	chr1	99661439	99661625	SINE|MIR|MIR	-	chr1	99646341	99694368	PALMD|ENST00000615664.1	+	99646341,99662318,99667641,99686718,99686724,99686929,99687075,99688774,99694018	99646362,99662399,99667717,99686722,99686790,99686963,99687189,99689872,99694368	0.578947
omental_fat_pad_male_adult_37_years	chr1	77129077	77129078	77129077	+	High_confidence	257	292	304	16.144795	5.889870	chr1	77128993	77129084	DNA|hAT-Charlie|MER58B	+	chr1	77129113	77129668	AC113935.1|ENST00000471722.1	+	77129113	77129668	0.868421
omental_fat_pad_male_adult_37_years	chr8	47360804	47360818	47360804	+	High_confidence	11	11	25	1.327697	4.229871	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47440397	SPIDR|ENST00000521918.6	+	47360818,47396375,47407860,47440322	47360949,47396626,47407961,47440397	0.560000
omental_fat_pad_male_adult_37_years	chr2	113118026	113118027	113118026	+	High_confidence	7	7	7	0.371755	2.521641	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	1.000000
omental_fat_pad_male_adult_37_years	chr4	38816533	38816536	38816533	-	High_confidence	13	16	24	1.274589	4.418296	chr4	38816327	38816690	LTR|ERVL-MaLR|MSTA	-	chr4	38814633	38816825	STRG.17544.1	-	38814633	38816825	0.666667
omental_fat_pad_male_adult_37_years	chr15	34988764	34988785	34988764	-	High_confidence	2	2	9	0.477971	2.750000	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.888889
omental_fat_pad_male_adult_37_years	chr12	13044158	13044159	13044158	+	High_confidence	29	30	39	2.071207	4.346226	chr12	13044134	13044231	SINE|MIR|MIRb	-	chr12	13044283	13083449	FAM234B|ENST00000197268.12	+	13044283,13055550,13058450,13061574,13062844,13066639,13067154,13068303,13068629,13071240,13076025,13079788,13080624	13044440,13055946,13058549,13061763,13062975,13066787,13067296,13068447,13068711,13071396,13076143,13080009,13083449	0.923077
omental_fat_pad_male_adult_37_years	chr22	39021125	39021156	39021125	+	High_confidence	2	2	9	0.477971	2.500000	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.888889
omental_fat_pad_male_adult_37_years	chr1	89272819	89272871	89272859	-	High_confidence	40	43	289	15.348177	6.444541	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.923875
omental_fat_pad_male_adult_37_years	chr12	10710653	10710654	10710653	-	High_confidence	9	9	13	0.690402	3.251629	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.692308
omental_fat_pad_male_adult_37_years	chr22	35662305	35662339	35662338	+	RAMPAGE_only	11	11	21	1.115265	3.484184	chr22	35662325	35662742	LTR|ERV1|MER4A1	+	chr22	35648394	35668409	APOL6|ENST00000409652.4	+	35648394,35656378,35658614	35648623,35656475,35668409	0.952381
omental_fat_pad_male_adult_37_years	chr9	36040865	36040866	36040865	+	RAMPAGE_only	4	7	7	0.371755	2.521641	chr9	36040076	36040898	LINE|L2|L2a	-	chr9	36036939	36086195	RECK|ENST00000479053.1	+	36036939,36052264,36058826,36060118,36063794,36065576,36080604,36083364,36085174	36037098,36052323,36058901,36060155,36063880,36065624,36080638,36083562,36086195	0.571429
omental_fat_pad_male_adult_37_years	chr3	8558100	8558212	8558143	+	RAMPAGE_only	5	6	46	2.442962	4.716618	chr3	8557719	8558247	LTR|ERVL-MaLR|MLT1G1	-	chr3	8501887	8567621	STRG.12172.3	+	8501887,8514924,8532736,8537184,8548567,8549873	8501980,8514995,8532825,8537440,8548903,8567621	1.000000
omental_fat_pad_male_adult_37_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	8	9	10	0.531079	3.121928	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.700000
omental_fat_pad_male_adult_37_years	chr2	110118106	110118147	110118141	-	RAMPAGE_only	3	5	16	0.849726	3.640224	chr2	110117625	110118184	LINE|L1|L1MD2	-	chr2	110083869	110116566	MALL|NM_005434.4	-	110083869,110087571,110091602,110115687	110085757,110087697,110091770,110116566	0.687500
omental_fat_pad_male_adult_37_years	chr7	82214035	82214042	82214041	-	RAMPAGE_only	183	279	365	19.384376	7.162538	chr7	82213847	82214213	LTR|ERVL-MaLR|MLT1A0	-	chr7	82004485	82217729	STRG.29508.3	-	82004485,82005764,82007678,82012153,82013460,82014400,82032796,82038076,82060427,82064303,82066454,82084768,82117043,82136634,82170549,82213925	82005497,82005839,82007756,82012243,82013510,82014479,82032901,82038235,82060527,82064354,82066524,82084900,82117173,82136676,82170609,82217729	0.520548
omental_fat_pad_male_adult_37_years	chr6	125828227	125828228	125828227	+	RAMPAGE_only	8	8	12	0.637295	2.550341	chr6	125828208	125828418	LINE|L2|L2-3_Crp	-	chr6	125815217	125855590	NCOA7|ENST00000487635.1	+	125815217,125855019	125815404,125855590	0.916667
omental_fat_pad_male_adult_37_years	chr19	17197856	17197857	17197856	+	High_confidence	6	7	7	0.371755	2.521641	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	1.000000
omental_fat_pad_male_adult_37_years	chr6	143849991	143849992	143849991	+	RAMPAGE_only	7	7	10	0.531079	2.947703	chr6	143849659	143850038	LTR|ERVL-MaLR|MLT1C	-	chr6	143843370	143863806	LTV1|NM_032860.3	+	143843370,143844485,143846050,143850130,143857302,143857751,143860425,143862103,143862843,143863085,143863416	143843480,143844617,143846224,143850218,143857444,143858007,143860553,143862243,143862896,143863286,143863806	0.700000
omental_fat_pad_male_adult_37_years	chr5	151669675	151669719	151669675	-	RAMPAGE_only	4	4	20	1.062158	3.195296	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.900000
omental_fat_pad_male_adult_37_years	chr16	75248150	75248151	75248150	-	High_confidence	48	52	59	3.133365	5.014834	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.745763
omental_fat_pad_male_adult_37_years	chr12	105233219	105233220	105233219	-	High_confidence	33	36	43	2.283639	4.784942	chr12	105233175	105233274	LINE|L2|L2c	+	chr12	105177109	105233154	APPL2|ENST00000547809.5	-	105177109,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105233090	105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105233154	0.976744
omental_fat_pad_male_adult_37_years	chr9	39810093	39810118	39810093	-	High_confidence	4	4	15	0.796618	3.323231	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39777349	39810097	GLIDR|ENST00000638724.1	-	39777349,39778893,39809485,39809730	39778566,39778944,39809615,39810097	0.800000
omental_fat_pad_male_adult_37_years	chr10	30437334	30437357	30437334	+	RAMPAGE_only	3	3	11	0.584187	3.459432	chr10	30437330	30437549	SINE|MIR|MIR	-	chr10	30438821	30461833	MAP3K8|ENST00000375321.1	+	30438821,30447781,30450257,30451637,30458083,30459254,30460705	30439274,30447949,30450519,30451744,30458236,30459501,30461833	0.727273
omental_fat_pad_male_adult_37_years	chr3	64522406	64522429	64522428	-	High_confidence	3	3	8	0.424863	2.750000	chr3	64522406	64524761	DNA|hAT-Charlie|Cheshire	+	chr3	64515656	64522511	ADAMTS9|ENST00000477180.1	-	64515656,64522165	64517121,64522511	0.625000
omental_fat_pad_male_adult_37_years	chr17	2975660	2975667	2975660	+	RAMPAGE_only	8	9	22	1.168373	4.368523	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2905206	3037698	STRG.56185.1	+	2905206,2957758,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2905368,2957794,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037698	0.727273
omental_fat_pad_male_adult_37_years	chr1	99661168	99661187	99661186	-	High_confidence	12	12	19	1.009050	3.576618	chr1	99660982	99661272	DNA|TcMar-Mariner|MARNA	-	chr1	99657036	99661157	STRG.2834.1	-	99657036	99661157	0.842105
omental_fat_pad_male_adult_37_years	chr7	2242922	2242923	2242922	+	High_confidence	12	12	12	0.637295	3.418296	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
omental_fat_pad_male_adult_37_years	chr1	15305736	15305765	15305736	+	High_confidence	3	6	11	0.584187	2.845351	chr1	15305544	15305895	LTR|ERVL-MaLR|THE1A	+	chr1	15305760	15330059	FHAD1|ENST00000375996.6	+	15305760,15308612,15313056,15316377,15317823,15324451,15327058,15328276,15329345	15305819,15308736,15313187,15316467,15317928,15324559,15327142,15328429,15330059	0.818182
omental_fat_pad_male_adult_37_years	chr16	57357905	57357906	57357905	+	High_confidence	4	6	6	0.318647	2.584963	chr16	57357889	57358182	LINE|L2|L2b	-	chr16	57358771	57366190	CCL22|ENST00000219235.4	+	57358771,57360436,57363503	57358889,57360560,57366190	0.666667
omental_fat_pad_male_adult_37_years	chr20	38146721	38146754	38146721	-	RAMPAGE_only	2	2	11	0.584187	2.921928	chr20	38146558	38146675	SINE|MIR|MIR3	-	chr20	38137949	38165282	TGM2|ENST00000468262.5	-	38137949,38139411,38141281,38142063,38146716,38147960,38150938,38155846,38161419,38165188	38138385,38139654,38141385,38142199,38146894,38148089,38151057,38156089,38161599,38165282	0.818182
omental_fat_pad_male_adult_37_years	chr9	116605987	116605990	116605987	-	RAMPAGE_only	11	11	24	1.274589	3.970573	chr9	116605863	116606013	SINE|MIR|MIR3	+	chr9	116425224	116687215	ASTN2|NM_198186.3	-	116425224,116440608,116442452,116487358,116618323,116620309,116651527,116686696	116426088,116440792,116442553,116487500,116618472,116620443,116651793,116687215	0.583333
omental_fat_pad_male_adult_37_years	chr1	108599849	108599855	108599854	+	RAMPAGE_only	13	14	20	1.062158	3.884184	chr1	108599722	108599999	SINE|Alu|AluSx1	+	chr1	108560348	108639327	FAM102B|NM_001010883.2	+	108560348,108600565,108606222,108612177,108616381,108624644,108628166,108628394,108628676,108629587,108635107	108560565,108600686,108606252,108612294,108616428,108624748,108628262,108628584,108628804,108629657,108639327	0.500000
omental_fat_pad_male_adult_37_years	chr11	16576031	16576032	16576031	+	RAMPAGE_only	7	7	7	0.371755	2.807355	chr11	16576031	16576342	SINE|Alu|AluYa5	+	chr11	16996655	16997038	STRG.40551.1	+	16996655	16997038	1.000000
omental_fat_pad_male_adult_37_years	chr12	57138548	57138572	57138567	+	RAMPAGE_only	2	3	11	0.584187	2.845351	chr12	57138607	57138694	DNA|TcMar-Tigger|Tigger19b	+	chr12	57128908	57155593	LRP1|ENST00000554174.1	+	57128908,57138458,57141373,57143678,57144971,57145226,57154207,57154478	57129031,57138581,57141511,57143798,57145100,57145490,57154370,57155593	0.909091
omental_fat_pad_male_adult_37_years	chr11	57569350	57569351	57569350	-	RAMPAGE_only	11	11	11	0.584187	3.095795	chr11	57569252	57569578	LINE|L2|L2c	-	chr11	57551654	57568330	UBE2L6|NM_198183.2	-	57551654,57554436,57560336,57567848	57552509,57554623,57560432,57568330	0.818182
omental_fat_pad_male_adult_37_years	chr3	138601911	138601912	138601911	+	RAMPAGE_only	13	13	14	0.743510	3.238901	chr3	138601717	138602070	LTR|ERVL-MaLR|THE1A	+	chr3	138608605	138631139	FAIM|ENST00000470889.5	+	138608605,138610603,138621406,138622187,138629106	138608937,138611037,138621539,138622416,138631139	0.928571
omental_fat_pad_male_adult_37_years	chr20	36911515	36911562	36911515	-	RAMPAGE_only	1	1	8	0.424863	2.521641	chr20	36911497	36911692	SINE|MIR|MIRb	-	chr20	36904021	36927190	SAMHD1|ENST00000644688.1	-	36904021,36905363,36911217,36912460,36916721,36916948,36919363,36927181	36904249,36905503,36911333,36912552,36916830,36917049,36919519,36927190	0.750000
omental_fat_pad_male_adult_37_years	chr9	104906000	104906025	104906024	-	RAMPAGE_only	3	3	7	0.371755	2.521641	chr9	104905864	104906087	SINE|MIR|MIRb	+	chr9	104855565	104928139	ABCA1|ENST00000423487.6	-	104855565,104858521,104861678,104883038,104884426,104889101,104903613,104927934	104856088,104858698,104861800,104883157,104884568,104889195,104903771,104928139	1.000000
omental_fat_pad_male_adult_37_years	chr7	137933009	137933020	137933009	-	High_confidence	3	3	13	0.690402	3.251629	chr7	137932870	137933021	DNA|hAT-Charlie|MER5A1	-	chr7	137874978	137932988	CREB3L2|NM_001318246.1	-	137874978,137882411,137884994,137885402,137901353,137903958,137905701,137908251,137912990,137915836,137928149,137932903	137880551,137882628,137885121,137885502,137901422,137904017,137905848,137908436,137913078,137916012,137928366,137932988	0.615385
omental_fat_pad_male_adult_37_years	chr19	55280217	55280236	55280217	-	High_confidence	3	5	12	0.637295	2.855389	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
omental_fat_pad_male_adult_37_years	chr16	29963558	29963561	29963558	+	High_confidence	4	5	8	0.424863	2.750000	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.750000
omental_fat_pad_male_adult_37_years	chr11	65442732	65442960	65442818	+	RAMPAGE_only	27	27	113	6.001190	5.627194	chr11	65442603	65442894	SINE|Alu|AluSx4	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.991150
omental_fat_pad_male_adult_37_years	chr17	4852448	4852506	4852448	+	RAMPAGE_only	12	12	44	2.336747	4.501278	chr17	4852316	4852553	LINE|L2|L2c	-	chr17	4833620	4885965	MINK1|ENST00000577021.1	+	4833620,4878316,4880983,4881113,4884362,4884911,4885482,4885910	4833640,4878382,4881040,4881257,4884473,4885002,4885613,4885965	0.795455
omental_fat_pad_male_adult_37_years	chr12	93773408	93773412	93773411	+	High_confidence	168	186	290	15.401285	7.114590	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93773290	93850695	STRG.46308.3	+	93773290,93849969	93773486,93850695	0.613793
omental_fat_pad_male_adult_37_years	chr15	78306533	78306578	78306577	-	RAMPAGE_only	3	4	12	0.637295	3.251629	chr15	78306427	78306552	LINE|CR1|L3	-	chr15	78283234	78299794	WDR61|ENST00000267973.6	-	78283234,78285260,78286040,78288288,78289618,78289950,78292615,78293166,78294945,78295674,78299561	78283521,78285339,78286133,78288382,78289712,78290099,78292788,78293272,78294973,78295725,78299794	0.750000
omental_fat_pad_male_adult_37_years	chr4	86453161	86453207	86453202	-	High_confidence	56	64	451	23.951653	5.848327	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.926829
omental_fat_pad_male_adult_37_years	chr3	143824553	143824567	143824553	-	RAMPAGE_only	2	2	6	0.318647	2.584963	chr3	143824344	143824714	LINE|L2|L2a	+	chr3	143265221	143848531	SLC9A9|ENST00000316549.10	-	143265221,143268874,143363483,143382059,143467036,143493652,143495334,143552361,143574087,143578584,143652254,143693191,143795000,143796825,143832018,143848147	143266929,143268980,143363563,143382114,143467190,143493764,143495448,143552450,143574193,143578723,143652360,143693307,143795077,143796903,143832221,143848531	0.500000
omental_fat_pad_male_adult_37_years	chr14	55796687	55796688	55796687	-	High_confidence	4	5	7	0.371755	2.584963	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796688	LINC00520|ENST00000649892.1	-	55781136,55793367,55796602	55782581,55793456,55796688	0.571429
omental_fat_pad_male_adult_37_years	chr11	62600173	62600187	62600186	-	High_confidence	6	6	14	0.743510	3.546594	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.500000
omental_fat_pad_male_adult_37_years	chr12	92454332	92454355	92454354	-	RAMPAGE_only	21	21	40	2.124315	4.784184	chr12	92454286	92454485	SINE|MIR|MIRb	-	chr12	92420093	92428148	CLLU1OS|NM_001025232.1	-	92420093,92420998,92422546,92428094	92420460,92421173,92422636,92428148	0.775000
omental_fat_pad_male_adult_37_years	chr9	33068829	33068930	33068829	-	RAMPAGE_only	3	3	23	1.221481	3.879664	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.956522
omental_fat_pad_male_adult_37_years	chr2	217223749	217223750	217223749	+	High_confidence	11	11	12	0.637295	3.277613	chr2	217223088	217224065	DNA|hAT-Tip100|MER45B	-	chr2	217223755	217224186	STRG.11095.1	+	217223755	217224186	0.500000
omental_fat_pad_male_adult_37_years	chr9	129488730	129488905	129488856	+	High_confidence	65	65	551	29.262441	6.065214	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.941924
omental_fat_pad_male_adult_37_years	chrY	3002631	3002652	3002651	-	High_confidence	21	21	38	2.018099	4.807009	chrY	3002436	3002992	LTR|ERV1|LTR4	+	chrY	2966843	3002626	ZFY-AS1|ENST00000417305.1	-	2966843,2981837,3002312	2966939,2981927,3002626	0.631579
omental_fat_pad_male_adult_37_years	chr9	77822994	77823013	77822997	-	RAMPAGE_only	25	25	61	3.239581	4.528297	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77797527	78030604	GNAQ|ENST00000411677.1	-	77797527,77815615,77922160,78030514	77797648,77815770,77922345,78030604	0.557377
omental_fat_pad_male_adult_37_years	chr1	212792338	212792445	212792444	-	High_confidence	5	5	31	1.646344	4.573557	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.838710
omental_fat_pad_male_adult_37_years	chr17	2667195	2667196	2667195	+	High_confidence	8	11	11	0.584187	3.121928	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.818182
omental_fat_pad_male_adult_37_years	chr13	46156456	46156539	46156456	-	RAMPAGE_only	6	6	76	4.036199	5.295520	chr13	46156240	46156407	DNA|TcMar-Tigger|Tigger19a	-	chr13	46146905	46153265	LCP1|ENST00000469227.5	-	46146905,46148351,46150935,46152779,46153138	46147103,46148447,46151078,46152945,46153265	0.815789
omental_fat_pad_male_adult_37_years	chr3	194486575	194486632	194486575	-	High_confidence	9	10	36	1.911884	4.183014	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.833333
omental_fat_pad_male_adult_37_years	chr2	102143615	102143633	102143632	+	High_confidence	3	4	9	0.477971	2.750000	chr2	102143519	102143634	SINE|MIR|MIRc	-	chr2	102142785	102179874	IL1R1|ENST00000410023.5	+	102142785,102153940,102157718,102164773,102165114,102166112,102168597,102171800,102172686,102174586,102175477,102176352	102143020,102154017,102157785,102165008,102165304,102166281,102168663,102171918,102172838,102174730,102175645,102179874	0.666667
omental_fat_pad_male_adult_37_years	chr1	107786426	107786449	107786435	-	High_confidence	3	3	14	0.743510	3.392747	chr1	107786342	107786559	SINE|MIR|MIR	+	chr1	107573168	107785624	VAV3|ENST00000343258.8	-	107573168,107574046,107596211,107602396,107603046,107609930,107617566,107642618,107683487,107688380,107704549,107704959,107748967,107749461,107751116,107755426,107757260,107760783,107765075,107766446,107768440,107770635,107772734,107777230,107779433,107785457	107573372,107574198,107596341,107602484,107603163,107609965,107617632,107642755,107683533,107688406,107704650,107705061,107749077,107749594,107751202,107755513,107757329,107760879,107765175,107766550,107768509,107770728,107772843,107777296,107779492,107785624	0.785714
omental_fat_pad_male_adult_37_years	chr3	151539200	151539266	151539265	-	RAMPAGE_only	8	8	27	1.433913	4.176753	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.925926
omental_fat_pad_male_adult_37_years	chr22	50670871	50670886	50670878	+	High_confidence	4	4	14	0.743510	3.238901	chr22	50670706	50671175	LINE|L2|L2b	-	chr22	50670880	50671211	STRG.66482.1	+	50670880	50671211	0.571429
omental_fat_pad_male_adult_37_years	chr6	109325708	109325709	109325708	+	High_confidence	23	24	24	1.274589	4.023137	chr6	109324446	109326053	LINE|L2|L2a	-	chr6	109325643	109355063	STRG.25596.2	+	109325643,109329002,109336367,109337395,109337756,109338447,109340901,109341298,109342398,109343986,109348426,109354847	109325795,109329112,109336517,109337449,109337939,109338615,109341054,109341433,109342551,109344196,109348547,109355063	0.875000
omental_fat_pad_male_adult_37_years	chr17	34255590	34255591	34255590	+	High_confidence	9	9	10	0.531079	2.725481	chr17	34255527	34255643	SINE|MIR|MIRc	-	chr17	34255284	34257203	CCL2|ENST00000225831.4	+	34255284,34256221,34256721	34255425,34256339,34257203	0.600000
omental_fat_pad_male_adult_37_years	chr11	355931	355981	355938	-	High_confidence	9	11	32	1.699452	4.228073	chr11	355689	355901	LTR|ERVL|LTR40b	-	chr11	355314	356095	STRG.39886.1	-	355314	356095	0.875000
omental_fat_pad_male_adult_37_years	chr3	188947129	188947237	188947236	+	High_confidence	56	59	156	8.284829	6.274359	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.621795
omental_fat_pad_male_adult_37_years	chr12	27579302	27579303	27579302	+	RAMPAGE_only	4	4	7	0.371755	2.521641	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27524255	27695564	PPFIBP1|ENST00000228425.10	+	27524255,27578151,27633361,27634909,27646061,27647728,27650009,27654721,27656615,27658815,27660883,27664361,27667165,27671430,27672426,27673766,27674191,27676427,27677063,27679488,27679932,27681545,27682386,27682614,27687384,27688297,27689014,27691748,27692590,27692795	27524365,27578239,27633460,27635115,27646148,27647842,27650141,27654814,27656730,27658848,27660945,27664446,27667320,27671546,27672483,27673827,27674221,27676599,27677096,27679639,27680061,27681696,27682498,27682703,27687507,27688423,27689203,27691928,27692656,27695564	1.000000
omental_fat_pad_male_adult_37_years	chr4	153687951	153687954	153687951	+	RAMPAGE_only	10	11	16	0.849726	3.625000	chr4	153687920	153688176	LTR|ERV1|MER57A-int	+	chr4	153684279	153705452	TLR2|ENST00000642700.1	+	153684279,153687901,153702891	153684360,153688047,153705452	0.625000
omental_fat_pad_male_adult_37_years	chr4	2867814	2867815	2867814	+	High_confidence	8	8	9	0.477971	2.750000	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.888889
omental_fat_pad_male_adult_37_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	31	31	31	1.646344	3.643577	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
omental_fat_pad_male_adult_37_years	chr7	55538661	55538664	55538663	-	High_confidence	22	30	41	2.177423	3.766959	chr7	55538614	55538881	LINE|L1|L1ME4b	+	chr7	55471967	55538660	VOPP1|ENST00000625836.2	-	55471967,55492281,55497612,55521071,55538612	55473045,55492418,55497690,55521130,55538660	0.878049
omental_fat_pad_male_adult_37_years	chr15	93863036	93863088	93863065	+	High_confidence	11	11	69	3.664444	5.388790	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863050	93865736	STRG.53661.2	+	93863050,93865373	93863216,93865736	0.550725
omental_fat_pad_male_adult_37_years	chr2	241843099	241843143	241843139	+	High_confidence	7	7	44	2.336747	4.624093	chr2	241842855	241843211	LINE|L1|L1MB3	-	chr2	241843097	241843833	STRG.11914.1	+	241843097	241843833	0.977273
omental_fat_pad_male_adult_37_years	chr9	127762413	127762425	127762417	-	High_confidence	5	5	13	0.690402	3.418296	chr9	127762302	127762854	LINE|L2|L2a	+	chr9	127738316	127762418	SH2D3C|NM_001142532.1	-	127738316,127739681,127740257,127741787,127742848,127744563,127747146,127749210,127751171,127761610,127762120	127738921,127739888,127740369,127741959,127742964,127745099,127747271,127749665,127751300,127761650,127762418	0.692308
omental_fat_pad_male_adult_37_years	chr3	180870551	180870552	180870551	-	High_confidence	4	4	7	0.371755	2.584963	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180743798	180870515	STRG.16270.1	-	180743798,180751347,180781983,180847506,180870046	180748316,180751410,180782124,180847624,180870515	0.857143
omental_fat_pad_male_adult_37_years	chr7	11192786	11192800	11192799	+	High_confidence	3	4	8	0.424863	2.500000	chr7	11192822	11192883	LINE|L1|L1MA1	+	chr7	11192759	11197417	AC004160.1|ENST00000611449.1	+	11192759,11197309	11193050,11197417	0.500000
omental_fat_pad_male_adult_37_years	chr2	171231263	171231276	171231275	-	High_confidence	3	3	8	0.424863	2.500000	chr2	171231092	171231479	LTR|ERVL-MaLR|MLT1C	-	chr2	170990822	171231314	TLK1|NM_001136554.1	-	170990822,170996652,170997711,171006146,171006473,171006799,171006971,171011372,171014850,171028338,171046173,171049813,171050063,171053760,171055082,171056470,171058150,171061080,171082780,171117738,171231144	170993956,170996760,170997823,171006282,171006643,171006889,171007063,171011454,171014948,171028405,171046362,171049950,171050174,171053853,171055172,171056566,171058197,171061156,171082852,171117857,171231314	0.875000
omental_fat_pad_male_adult_37_years	chr14	39265935	39265955	39265954	+	High_confidence	7	7	13	0.690402	2.855389	chr14	39265902	39265967	LINE|RTE-BovB|MamRTE1	+	chr14	39265967	39350423	MIA2|ENST00000396165.8	+	39265967,39276933,39279336,39279448,39291018,39293270,39293999,39294924,39299863,39302128,39303477,39304290,39308448,39313339,39314738,39315682,39317943,39319208,39320927,39326863,39345903,39347712,39348742,39350097	39266527,39277065,39279358,39279537,39291096,39293381,39294071,39295029,39299986,39302249,39303524,39304381,39308587,39313441,39314799,39315718,39318011,39319291,39321056,39327022,39346026,39347771,39348977,39350423	0.923077
omental_fat_pad_male_adult_37_years	chr3	15341379	15341383	15341379	-	High_confidence	11	14	19	1.009050	3.794653	chr3	15341159	15341407	LINE|L2|L2a	+	chr3	15255649	15341368	SH3BP5|ENST00000408919.7	-	15255649,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341368	0.684211
omental_fat_pad_male_adult_37_years	chr8	17895504	17895524	17895504	-	High_confidence	2	2	10	0.531079	3.121928	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	1.000000
omental_fat_pad_male_adult_37_years	chr22	37849317	37849326	37849321	-	High_confidence	10	10	27	1.433913	3.973661	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.925926
omental_fat_pad_male_adult_37_years	chr9	89479889	89479890	89479889	-	High_confidence	106	108	109	5.788759	5.034768	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89381055	89479890	STRG.35303.1	-	89381055,89381173,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89418362,89455887,89474538,89475484,89479571	89381098,89381346,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89418437,89455953,89474623,89475550,89479890	0.963303
omental_fat_pad_male_adult_37_years	chr6	43013392	43013393	43013392	-	High_confidence	12	12	16	0.849726	3.589898	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.937500
omental_fat_pad_male_adult_37_years	chr21	34512314	34512318	34512314	-	High_confidence	4	6	10	0.531079	2.947703	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34446687	34512275	KCNE1|NM_000219.5	-	34446687,34458653,34511100,34512026	34449684,34458764,34511315,34512275	0.700000
omental_fat_pad_male_adult_37_years	chr6	109325742	109325773	109325742	+	High_confidence	7	7	16	0.849726	3.875000	chr6	109324446	109326053	LINE|L2|L2a	-	chr6	109325643	109355063	STRG.25596.2	+	109325643,109329002,109336367,109337395,109337756,109338447,109340901,109341298,109342398,109343986,109348426,109354847	109325795,109329112,109336517,109337449,109337939,109338615,109341054,109341433,109342551,109344196,109348547,109355063	0.812500
omental_fat_pad_male_adult_37_years	chr5	172954187	172954207	172954206	+	RAMPAGE_only	5	8	15	0.796618	3.664498	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172958728	172969716	RPL26L1|ENST00000519974.5	+	172958728,172959864,172968458,172969412	172958801,172960041,172968599,172969716	0.800000
omental_fat_pad_male_adult_37_years	chr3	186990718	186990719	186990718	+	RAMPAGE_only	5	5	8	0.424863	2.807355	chr3	186990703	186990831	SINE|Alu|AluSq2	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.875000
omental_fat_pad_male_adult_37_years	chr3	151531411	151531412	151531411	-	RAMPAGE_only	14	17	19	1.009050	3.836592	chr3	151528406	151534796	LINE|L1|L1PA7	+	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.526316
omental_fat_pad_male_adult_37_years	chr10	79435765	79435782	79435781	-	RAMPAGE_only	4	4	20	1.062158	3.260828	chr10	79435626	79435755	SINE|MIR|MIR3	-	chr10	79386036	79444219	ZCCHC24|ENST00000372333.3	-	79386036,79394275,79432557,79444101	79386458,79394440,79432758,79444219	0.900000
omental_fat_pad_male_adult_37_years	chr3	186855517	186855922	186855718	+	RAMPAGE_only	39	60	662	35.157415	7.079459	chr3	186855459	186855753	SINE|Alu|AluSz6	-	chr3	186842703	186858463	ADIPOQ|ENST00000444204.2	+	186842703,186845556,186853050,186854183	186842749,186845607,186853272,186858463	1.000000
omental_fat_pad_male_adult_37_years	chr11	60327249	60327250	60327249	+	High_confidence	14	14	21	1.115265	3.784184	chr11	60327087	60327483	LTR|ERVL-MaLR|MLT1A1	+	chr11	60327251	60341335	STRG.41332.1	+	60327251,60334881,60337740,60339865,60340775	60327408,60335042,60337947,60339964,60341335	0.952381
omental_fat_pad_male_adult_37_years	chr6	43025276	43025308	43025307	+	High_confidence	4	4	12	0.637295	2.845351	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.916667
omental_fat_pad_male_adult_37_years	chr19	49867874	49867877	49867876	-	High_confidence	7	12	17	0.902834	3.375000	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49861203	49867886	PNKP|ENST00000322344.7	-	49861203,49861448,49861607,49861771,49862043,49862184,49862370,49862537,49862689,49863688,49863963,49864178,49864323,49865126,49866398,49867053,49867468	49861365,49861510,49861695,49861881,49862105,49862281,49862463,49862608,49862738,49863760,49864071,49864236,49864403,49865426,49866445,49867217,49867886	0.529412
omental_fat_pad_male_adult_37_years	chr5	151157944	151157996	151157953	-	High_confidence	6	6	58	3.080257	4.907646	chr5	151157893	151158048	SINE|MIR|MIR3	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.982759
omental_fat_pad_male_adult_37_years	chr3	8563427	8563488	8563427	+	RAMPAGE_only	8	8	17	0.902834	3.734522	chr3	8563408	8563553	LINE|L2|L2b	-	chr3	8501887	8567621	STRG.12172.3	+	8501887,8514924,8532736,8537184,8548567,8549873	8501980,8514995,8532825,8537440,8548903,8567621	1.000000
omental_fat_pad_male_adult_37_years	chr1	196404172	196404180	196404172	-	High_confidence	3	3	8	0.424863	2.750000	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225877	196404259	STRG.4815.1	-	196225877,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404259	0.625000
omental_fat_pad_male_adult_37_years	chr5	32403115	32403117	32403115	-	RAMPAGE_only	4	7	11	0.584187	3.277613	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
omental_fat_pad_male_adult_37_years	chr4	3930791	3930816	3930791	-	RAMPAGE_only	3	3	9	0.477971	2.947703	chr4	3930769	3930917	LTR|ERV1|HERVH-int	+	chr4	3919306	3929729	STRG.16794.1	-	3919306,3924070,3929541	3921782,3924267,3929729	0.888889
omental_fat_pad_male_adult_37_years	chr10	5002439	5002448	5002439	-	RAMPAGE_only	8	12	19	1.009050	4.037401	chr10	5001917	5002429	LTR|ERVL|MER68	-	chr10	4989788	5003860	STRG.36918.6	-	4989788,4991830,4995318,4995755,4998624,5001513	4990038,4991913,4995484,4995865,5000666,5003860	1.000000
omental_fat_pad_male_adult_37_years	chr16	761049	761120	761114	+	High_confidence	148	156	655	34.785660	6.289038	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.964885
omental_fat_pad_male_adult_37_years	chr16	760887	760925	760924	+	High_confidence	46	50	108	5.735651	5.744762	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	0.990741
omental_fat_pad_male_adult_37_years	chr11	33256567	33256568	33256567	+	High_confidence	5	6	8	0.424863	2.750000	chr11	33256533	33256644	SINE|MIR|MIR3	+	chr11	33256671	33353568	HIPK3|ENST00000525975.5	+	33256671,33286412,33328509,33337074,33338756,33339349,33340967,33341562,33347292,33347628,33347851,33348521,33349146,33351607,33352137,33353091	33256752,33287511,33328633,33337194,33338843,33339534,33341127,33341686,33347414,33347753,33348013,33348818,33349287,33351843,33352265,33353568	1.000000
omental_fat_pad_male_adult_37_years	chr17	51153837	51153853	51153852	+	High_confidence	6	6	10	0.531079	2.725481	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51154043	51155759	NME1|ENST00000456492.1	+	51154043,51155650	51154444,51155759	0.700000
omental_fat_pad_male_adult_37_years	chr6	108960922	108960937	108960936	+	RAMPAGE_only	5	5	9	0.477971	3.000000	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108848421	108973983	ARMC2|ENST00000392644.8	+	108848421,108854224,108858198,108868823,108876142,108894466,108899693,108904229,108910898,108912334,108928087,108936899,108953032,108961571,108962013,108964179,108964979,108973356	108848546,108854485,108858271,108868995,108876350,108894543,108899792,108904405,108911001,108912558,108928233,108936999,108953351,108961694,108962127,108964312,108965140,108973983	0.888889
omental_fat_pad_male_adult_37_years	chr19	11223351	11223352	11223351	-	RAMPAGE_only	15	15	17	0.902834	3.734522	chr19	11223304	11223458	LTR|ERVL-MaLR|MLT1J2	+	chr19	11199496	11236497	DOCK6|ENST00000587656.5	-	11199496,11200307,11200715,11200908,11201888,11202393,11202583,11204080,11204199,11208685,11208910,11211775,11211992,11213175,11214274,11214552,11215386,11215800,11216913,11217230,11221850,11222108,11222734,11222992,11227336,11228939,11232184,11233202,11235597,11236345	11199539,11200469,11200822,11201052,11202125,11202483,11202709,11204095,11204331,11208829,11209103,11211876,11212151,11213328,11214409,11214649,11215471,11215927,11217096,11217391,11222020,11222248,11222905,11223106,11227477,11229035,11232289,11233366,11235759,11236497	0.705882
omental_fat_pad_male_adult_37_years	chr12	104864879	104864880	104864879	+	High_confidence	4	5	6	0.318647	2.584963	chr12	104863461	104865746	LINE|L1|HAL1	-	chr12	104864925	104871617	STRG.46628.1	+	104864925,104870161	104865071,104871617	1.000000
omental_fat_pad_male_adult_37_years	chr12	79873266	79873267	79873266	-	High_confidence	13	13	16	0.849726	3.189898	chr12	79873243	79873519	DNA|hAT-Charlie|Charlie1a	+	chr12	79828370	79872872	PPP1R12A|ENST00000548318.1	-	79828370,79832331,79845301,79848787,79872807	79828464,79832491,79845420,79848931,79872872	0.875000
omental_fat_pad_male_adult_37_years	chr10	62056930	62056962	62056930	+	RAMPAGE_only	4	5	13	0.690402	3.392747	chr10	62056749	62056941	DNA|hAT-Charlie|MER58A	+	chr10	62049210	62096948	ARID5B|NM_001244638.1	+	62049210,62050887,62057116,62059242,62069699,62085701,62090861	62049483,62051000,62057318,62059295,62069797,62085900,62096948	1.000000
omental_fat_pad_male_adult_37_years	chr3	186854314	186855011	186855010	+	RAMPAGE_only	86	92	1830	97.187417	7.133915	chr3	186854936	186855143	SINE|MIR|MIRc	-	chr3	186842703	186858463	ADIPOQ|ENST00000444204.2	+	186842703,186845556,186853050,186854183	186842749,186845607,186853272,186858463	0.999454
omental_fat_pad_male_adult_37_years	chr16	55636702	55636703	55636702	+	RAMPAGE_only	47	47	47	2.496070	4.272912	chr16	55636498	55636760	SINE|Alu|AluSz	+	chr16	56632232	56633986	MT1M|ENST00000379818.3	+	56632232,56633339,56633750	56632759,56633405,56633986	1.000000
omental_fat_pad_male_adult_37_years	chr13	30376953	30376965	30376964	-	High_confidence	6	6	13	0.690402	2.931209	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30357741	30377145	LINC00426|ENST00000420219.5	-	30357741,30358253,30363160,30372284,30375466,30376826	30357889,30358376,30363226,30372374,30375776,30377145	0.846154
omental_fat_pad_male_adult_37_years	chr6	106541113	106541149	106541148	+	High_confidence	22	35	100	5.310788	4.839660	chr6	106541083	106541354	DNA|hAT-Charlie|MER102c	-	chr6	106541133	106555897	CRYBG1|ENST00000457437.1	+	106541133,106541585,106543439,106544570,106544787,106551851,106552183,106553454,106555767	106541295,106541621,106543597,106544697,106544933,106551978,106552216,106553567,106555897	0.810000
omental_fat_pad_male_adult_37_years	chr11	100715407	100715410	100715407	+	RAMPAGE_only	12	12	19	1.009050	3.932138	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100738442	100913524	ARHGAP42|ENST00000534060.5	+	100738442,100770342,100795104,100816714,100859553,100913451	100738498,100770438,100795166,100816856,100859625,100913524	0.631579
omental_fat_pad_male_adult_37_years	chr11	111097312	111097352	111097351	-	High_confidence	3	3	9	0.477971	2.725481	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	1.000000
omental_fat_pad_male_adult_37_years	chr17	82081603	82081710	82081606	-	High_confidence	30	30	124	6.585377	5.574459	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.540323
omental_fat_pad_male_adult_37_years	chr1	242001562	242001574	242001562	-	High_confidence	5	5	12	0.637295	2.855389	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	242001590	STRG.5991.1	-	241995489,241998513,241998775,241998950,242001308	241996385,241998620,241998831,241999026,242001590	1.000000
omental_fat_pad_male_adult_37_years	chr14	73366897	73366915	73366904	-	High_confidence	2	3	9	0.477971	2.500000	chr14	73366875	73367023	SINE|MIR|MIRb	+	chr14	73276548	73366920	NUMB|ENST00000560335.5	-	73276548,73282358,73287109,73292733,73297210,73316389,73323129,73355625,73366896	73277293,73282505,73287314,73292874,73297285,73316422,73323204,73355766,73366920	0.888889
omental_fat_pad_male_adult_37_years	chr22	35662972	35663074	35662972	+	RAMPAGE_only	16	17	70	3.717551	4.159882	chr22	35662745	35663134	LTR|ERV1|MER4-int	+	chr22	35648394	35668409	APOL6|ENST00000409652.4	+	35648394,35656378,35658614	35648623,35656475,35668409	0.942857
omental_fat_pad_male_adult_37_years	chr19	45424375	45424396	45424382	-	High_confidence	14	22	94	4.992141	5.560732	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	0.978723
omental_fat_pad_male_adult_37_years	chr9	39810033	39810034	39810033	-	High_confidence	11	11	15	0.796618	3.521641	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807380	39810058	GLIDR|ENST00000618092.2	-	39807380,39809730	39809633,39810058	0.533333
omental_fat_pad_male_adult_37_years	chr3	180870518	180870519	180870518	-	High_confidence	13	15	18	0.955942	3.852169	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180743798	180870515	STRG.16270.1	-	180743798,180751347,180781983,180847506,180870046	180748316,180751410,180782124,180847624,180870515	0.944444
omental_fat_pad_male_adult_37_years	chr7	11193340	11193360	11193340	+	High_confidence	4	4	8	0.424863	2.750000	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	1.000000
omental_fat_pad_male_adult_37_years	chr12	8681676	8681677	8681676	+	High_confidence	323	324	399	21.190043	7.397145	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.734336
omental_fat_pad_male_adult_37_years	chr6	118651542	118651593	118651563	-	High_confidence	64	64	328	17.419384	6.825137	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118460771	118651857	CEP85L|NM_001042475.2	-	118460771,118469071,118470536,118479870,118480395,118481778,118483705,118491685,118511297,118523801,118565528,118632452,118651196	118465568,118469303,118470644,118479921,118480513,118481933,118483858,118491865,118511415,118523920,118566316,118632611,118651857	0.935976
omental_fat_pad_male_adult_37_years	chr12	123617787	123617864	123617863	+	High_confidence	5	5	20	1.062158	3.684184	chr12	123617854	123617910	LINE|RTE-X|L4_A_Mam	-	chr12	123618015	123620422	DDX55|ENST00000421670.3	+	123618015,123619431,123619963	123618837,123619724,123620422	1.000000
omental_fat_pad_male_adult_37_years	chr2	73982163	73982169	73982168	-	High_confidence	9	10	17	0.902834	3.969816	chr2	73982060	73982404	LINE|L2|L2c	-	chr2	73957966	73981439	DGUOK-AS1|NR_104030.1	-	73957966,73981134	73958207,73981439	0.647059
omental_fat_pad_male_adult_37_years	chr5	77088321	77088328	77088327	+	High_confidence	7	7	15	0.796618	3.521641	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088311	77139817	ZBED3-AS1|ENST00000642398.1	+	77088311,77098654,77100235,77118319,77139260	77088472,77098747,77100391,77118521,77139817	0.533333
omental_fat_pad_male_adult_37_years	chr9	98045561	98045584	98045583	+	High_confidence	3	4	7	0.371755	2.807355	chr9	98045312	98045711	LTR|ERV1|MER57B1	+	chr9	98045592	98086130	STRG.35719.2	+	98045592,98060781,98076917,98078192,98080815,98082845	98045839,98060997,98077017,98078347,98081082,98086130	0.857143
omental_fat_pad_male_adult_37_years	chr7	44984361	44984362	44984361	-	RAMPAGE_only	6	6	7	0.371755	2.584963	chr7	44984007	44984385	LTR|ERVL|LTR40b	-	chr7	44983136	44986560	SNHG15|ENST00000584327.5	-	44983136,44983821,44984356,44986020,44986524	44983322,44983957,44984426,44986097,44986560	0.857143
omental_fat_pad_male_adult_37_years	chr8	143558019	143558020	143558019	+	High_confidence	18	18	18	0.955942	3.947703	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	1.000000
omental_fat_pad_male_adult_37_years	chr16	27330147	27330148	27330147	+	RAMPAGE_only	5	5	7	0.371755	2.521641	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27340203	27341200	IL4R|ENST00000628578.1	+	27340203,27341069	27340273,27341200	0.571429
omental_fat_pad_male_adult_37_years	chr3	138347725	138347798	138347725	+	High_confidence	4	4	21	1.115265	3.346439	chr3	138347598	138347891	SINE|Alu|AluSx	-	chr3	138347696	138405533	MRAS|ENST00000289104.8	+	138347696,138372865,138397323,138398468,138400533,138402169	138348325,138373076,138397477,138398568,138400613,138405533	0.952381
omental_fat_pad_male_adult_37_years	chr1	97904654	97904676	97904654	-	RAMPAGE_only	23	27	74	3.929983	5.545721	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.783784
omental_fat_pad_male_adult_37_years	chr1	12084157	12084242	12084236	+	RAMPAGE_only	27	44	99	5.257680	5.033141	chr1	12084124	12084342	LINE|L2|L2	-	chr1	12063376	12144207	TNFRSF8|ENST00000263932.6	+	12063376,12084463,12097100,12104378,12109565,12110040,12111897,12115576,12123283,12123714,12125950,12126182,12135587,12138228,12142286	12063661,12084551,12097217,12104531,12109656,12110204,12112014,12115729,12123377,12123827,12126052,12126236,12135613,12138436,12144207	0.828283
omental_fat_pad_male_adult_37_years	chr12	643625	643636	643635	-	High_confidence	37	37	131	6.957132	5.232738	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.961832
omental_fat_pad_male_adult_37_years	chr2	45192665	45192666	45192665	-	High_confidence	12	14	18	0.955942	3.392147	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45187169	45192285	LINC01121|ENST00000454673.1	-	45187169,45192139	45189249,45192285	0.722222
omental_fat_pad_male_adult_37_years	chr5	150640347	150640362	150640347	+	High_confidence	18	18	31	1.646344	4.542748	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.935484
omental_fat_pad_male_adult_37_years	chr6	161189868	161189872	161189868	-	RAMPAGE_only	6	6	10	0.531079	3.121928	chr6	161189857	161190030	DNA|TcMar-Tc2|MER104	+	chr6	161187556	161219335	STRG.26812.1	-	161187556	161219335	0.600000
omental_fat_pad_male_adult_37_years	chr12	16608092	16608126	16608125	-	High_confidence	10	10	45	2.389855	5.058984	chr12	16608118	16608177	LTR|ERV1|MER4-int	+	chr12	16548419	16608135	LMO3|ENST00000441439.6	-	16548419,16560412,16600654,16606065,16607935	16551327,16560538,16600868,16606132,16608135	0.911111
omental_fat_pad_male_adult_37_years	chr1	1655395	1655411	1655409	-	RAMPAGE_only	3	5	10	0.531079	2.947703	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.600000
omental_fat_pad_male_adult_37_years	chr17	32479853	32479866	32479865	+	High_confidence	3	5	11	0.584187	2.921928	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.818182
omental_fat_pad_male_adult_37_years	chr4	3929725	3929730	3929727	-	High_confidence	10	14	21	1.115265	3.921928	chr4	3927854	3930775	LTR|ERV1|HERVH-int	+	chr4	3919306	3929729	STRG.16794.1	-	3919306,3924070,3929541	3921782,3924267,3929729	0.619048
omental_fat_pad_male_adult_37_years	chr1	9239806	9239873	9239843	+	High_confidence	10	10	59	3.133365	5.503857	chr1	9239801	9239853	LINE|Penelope|Penelope1_Vert	+	chr1	9239843	9271337	H6PD|NM_001282587.1	+	9239843,9244924,9246965,9262058,9263508	9240018,9245561,9247083,9262328,9271337	0.932203
omental_fat_pad_male_adult_37_years	chr19	54617128	54617152	54617147	+	High_confidence	24	28	102	5.417004	6.046207	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.676471
omental_fat_pad_male_adult_37_years	chr5	150778538	150778567	150778538	+	High_confidence	5	5	18	0.955942	3.007196	chr5	150778483	150778644	SINE|MIR|MIR3	-	chr5	150778804	150796734	SMIM3|ENST00000648745.1	+	150778804,150782473,150795429	150778972,150782590,150796734	0.888889
omental_fat_pad_male_adult_37_years	chrX	100593584	100593640	100593639	+	High_confidence	8	8	34	1.805668	4.477025	chrX	100593595	100593649	LINE|CR1|L3	+	chrX	100593628	100600065	STRG.68160.3	+	100593628,100594260,100597503,100599015,100599507	100594035,100594362,100597657,100599182,100600065	1.000000
omental_fat_pad_male_adult_37_years	chr2	85354337	85354364	85354337	-	High_confidence	3	4	11	0.584187	2.921928	chr2	85354216	85354326	SINE|MIR|MIR1_Amn	-	chr2	85342087	85354620	RETSAT|ENST00000295802.8	-	85342087,85343638,85343998,85344238,85344593,85345974,85349383,85350039,85350779,85351679,85354335	85343381,85343798,85344165,85344348,85344732,85346094,85349581,85350241,85351021,85351862,85354620	0.818182
omental_fat_pad_male_adult_37_years	chr2	158717608	158717609	158717608	-	RAMPAGE_only	7	7	10	0.531079	2.947703	chr2	158717539	158717675	SINE|MIR|MIR	+	chr2	158678655	158723980	PKP4-AS1|ENST00000629904.2	-	158678655,158722763	158679389,158723980	0.500000
omental_fat_pad_male_adult_37_years	chr1	78620056	78620058	78620056	+	High_confidence	11	22	22	1.168373	4.095795	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	1.000000
omental_fat_pad_male_adult_37_years	chr11	65431071	65431102	65431101	+	RAMPAGE_only	6	8	17	0.902834	3.875000	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.941176
omental_fat_pad_male_adult_37_years	chr18	12880657	12880692	12880691	-	High_confidence	5	5	13	0.690402	3.238901	chr18	12880646	12880954	LINE|L2|L2	+	chr18	12859163	12880692	PTPN2|ENST00000643397.1	-	12859163,12880495	12859254,12880692	0.615385
omental_fat_pad_male_adult_37_years	chr17	20095885	20095889	20095885	+	RAMPAGE_only	3	3	8	0.424863	2.521641	chr17	20095831	20095918	SINE|MIR|MIR3	-	chr17	20087021	20314755	SPECC1|ENST00000261503.9	+	20087021,20096630,20110426,20204332,20227412,20231757,20232199,20245925,20247218,20253504,20257450,20260191,20296960,20306022,20313975	20087051,20096798,20110562,20205912,20227620,20231831,20232405,20246071,20247319,20253586,20257607,20260294,20297077,20306082,20314755	0.750000
omental_fat_pad_male_adult_37_years	chr19	17556556	17556557	17556556	+	High_confidence	6	7	9	0.477971	2.725481	chr19	17556574	17556631	SINE|MIR|MIR	+	chr19	17555593	17583162	COLGALT1|NM_024656.3	+	17555593,17559310,17560347,17567405,17568508,17572482,17577194,17577360,17577956,17579481,17580698,17581176	17555973,17559421,17560465,17567540,17568713,17572602,17577271,17577467,17578089,17579609,17580905,17583162	0.888889
omental_fat_pad_male_adult_37_years	chr17	55418139	55418140	55418139	-	RAMPAGE_only	4	4	6	0.318647	2.584963	chr17	55417820	55418370	LINE|L2|L2a	+	chr17	55392642	55421835	MMD|ENST00000649377.1	-	55392642,55401468,55403766,55404454,55407745,55411256,55414150,55421669	55394534,55401538,55403868,55404547,55407820,55411417,55414232,55421835	1.000000
omental_fat_pad_male_adult_37_years	chr19	49086520	49086547	49086520	+	High_confidence	30	33	75	3.983091	4.936343	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.920000
omental_fat_pad_male_adult_37_years	chr3	40828556	40828561	40828560	+	High_confidence	4	6	10	0.531079	3.169925	chr3	40828292	40828738	LTR|ERVL-MaLR|MLT1H	-	chr3	40828465	40829059	STRG.12974.1	+	40828465	40829059	0.700000
omental_fat_pad_male_adult_37_years	chr5	150776131	150776161	150776152	-	RAMPAGE_only	5	5	24	1.274589	4.349649	chr5	150775761	150776351	DNA|TcMar-Tigger|MER6A	-	chr5	150733383	150780376	STRG.22727.6	-	150733383,150742113,150753478,150756416,150779414,150779906	150733475,150742157,150753657,150756487,150779551,150780376	0.791667
omental_fat_pad_male_adult_37_years	chr1	40381347	40381387	40381386	+	RAMPAGE_only	4	4	22	1.168373	3.784184	chr1	40381190	40381531	LINE|L2|L2c	-	chr1	40374647	40423326	SMAP2|ENST00000372708.5	+	40374647,40406735,40408652,40409756,40413015,40414158,40415271,40416175,40416779,40421975	40374708,40406869,40408738,40409835,40413102,40414240,40415381,40416341,40417096,40423326	0.545455
omental_fat_pad_male_adult_37_years	chr12	8672518	8672519	8672518	-	RAMPAGE_only	15	15	22	1.168373	3.784184	chr12	8672365	8672715	LTR|ERVL-MaLR|THE1A	-	chr12	8645942	8662888	MFAP5|NM_001297710.1	-	8645942,8649500,8650501,8654436,8655414,8655785,8662046,8662626	8648203,8649574,8650589,8654481,8655447,8655830,8662106,8662888	0.727273
omental_fat_pad_male_adult_37_years	chr12	52245248	52245249	52245248	+	High_confidence	7	7	8	0.424863	2.521641	chr12	52245047	52245266	SINE|MIR|MIRb	-	chr12	52245438	52252186	KRT7|ENST00000548657.5	+	52245438,52248176,52251776	52245632,52248211,52252186	0.500000
omental_fat_pad_male_adult_37_years	chr1	153119387	153119416	153119387	-	RAMPAGE_only	7	7	18	0.955942	3.239098	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112113	153113515	SPRR2F|ENST00000468739.1	-	153112113,153113473	153112752,153113515	1.000000
omental_fat_pad_male_adult_37_years	chr7	40547018	40547019	40547018	-	High_confidence	5	5	7	0.371755	2.807355	chr7	40546944	40547406	LTR|ERVL|MLT2B4	-	chr7	40538126	40546928	AC004988.1|ENST00000415237.1	-	40538126,40546713	40539682,40546928	1.000000
omental_fat_pad_male_adult_37_years	chr14	20706941	20706942	20706941	-	High_confidence	4	5	7	0.371755	2.521641	chr14	20706808	20707335	LTR|ERV1|LTR26B	-	chr14	20706555	20706932	STRG.49011.1	-	20706555	20706932	0.571429
omental_fat_pad_male_adult_37_years	chr1	46804477	46804478	46804477	+	RAMPAGE_only	4	4	7	0.371755	2.521641	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.857143
omental_fat_pad_male_adult_37_years	chr4	6927318	6927319	6927318	+	RAMPAGE_only	6	6	8	0.424863	2.521641	chr4	6927305	6927415	SINE|MIR|MIR	+	chr4	6910247	7033111	STRG.16885.4	+	6910247,6923372,6967303,6994183,6996324,6999084,7001144,7004843,7006631,7010652,7014447,7025003,7030326	6910601,6924111,6967424,6994302,6996407,6999202,7001251,7004924,7006726,7010781,7014557,7025262,7033111	0.750000
omental_fat_pad_male_adult_37_years	chr2	179043807	179043808	179043807	-	RAMPAGE_only	14	14	16	0.849726	3.625000	chr2	179042647	179044414	LINE|L1|L1PA10	+	chr2	178829756	179050059	CCDC141|NM_173648.3	-	178829756,178836893,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900,178886751,178888526,178905328,178918712,178944534,178961229,178975056,178978483,179047283,179049839	178834440,178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178885092,178886871,178888668,178905501,178918907,178944651,178961483,178975165,178978675,179047406,179050059	0.937500
omental_fat_pad_male_adult_37_years	chr15	45631147	45631148	45631147	+	High_confidence	39	39	44	2.336747	4.814587	chr15	45630952	45631306	LTR|ERVL-MaLR|THE1A	+	chr15	45631147	45691280	SQOR|ENST00000568606.5	+	45631147,45631926,45658906,45661954,45669927,45673606,45676100,45682477,45688336,45689038,45690972	45631230,45632015,45659157,45662125,45669981,45673801,45676310,45682661,45688404,45689217,45691280	0.931818
omental_fat_pad_male_adult_37_years	chr3	44510995	44511020	44511019	-	High_confidence	9	9	36	1.911884	4.627987	chr3	44510972	44511269	SINE|Alu|AluSc8	+	chr3	44498969	44510640	ZNF852|NM_001287349.1	-	44498969,44499301,44502541,44502964,44510552	44499299,44500634,44502668,44503056,44510640	0.694444
omental_fat_pad_male_adult_37_years	chr11	65440658	65440912	65440781	+	RAMPAGE_only	71	71	609	32.342698	6.058465	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998358
omental_fat_pad_male_adult_37_years	chr20	23361357	23361397	23361396	+	High_confidence	5	6	10	0.531079	2.921928	chr20	23361190	23361459	LTR|ERV1|MER110A	-	chr20	23362131	23373062	GZF1|NM_001317012.1	+	23362131,23363220,23364362,23367002,23368761,23369583,23370090	23362237,23363317,23365747,23367097,23368929,23369741,23373062	0.600000
omental_fat_pad_male_adult_37_years	chr11	108225493	108225505	108225493	+	High_confidence	2	2	11	0.584187	3.121928	chr11	108225464	108225775	SINE|Alu|AluSg	-	chr11	108224782	108231594	ATM|ENST00000638443.1	+	108224782,108227594,108227775,108229177,108231487	108224871,108227696,108227888,108230912,108231594	0.636364
omental_fat_pad_male_adult_37_years	chr11	86955925	86955940	86955939	+	High_confidence	2	2	9	0.477971	2.750000	chr11	86955862	86955972	SINE|MIR|MIRb	+	chr11	86956090	87000490	AP001528.1|ENST00000531827.1	+	86956090,86957981,86999875	86956260,86958026,87000490	0.777778
omental_fat_pad_male_adult_37_years	chr5	109383446	109383463	109383462	-	High_confidence	5	5	10	0.531079	2.947703	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.900000
omental_fat_pad_male_adult_37_years	chr3	187738135	187738136	187738135	+	High_confidence	203	219	262	13.914264	5.726165	chr3	187738117	187738188	SINE|MIR|MIR3	-	chr3	187738141	187739109	STRG.16364.1	+	187738141	187739109	0.973282
omental_fat_pad_male_adult_37_years	chr19	17336685	17336686	17336685	+	High_confidence	6	8	9	0.477971	2.500000	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.666667
omental_fat_pad_male_adult_37_years	chr10	267365	267390	267365	+	High_confidence	16	17	42	2.230531	4.238667	chr10	266906	267619	LINE|L1|L1ME4b	+	chr10	267307	268696	STRG.36825.1	+	267307	268696	0.976190
omental_fat_pad_male_adult_37_years	chr16	83808533	83808572	83808561	+	High_confidence	11	11	42	2.230531	4.189238	chr16	83808490	83808599	SINE|MIR|MIR3	-	chr16	83808061	83811503	HSBP1|ENST00000567382.1	+	83808061,83809304,83811420	83808746,83809425,83811503	0.761905
omental_fat_pad_male_adult_37_years	chr3	44439852	44439896	44439852	-	RAMPAGE_only	4	5	29	1.540128	4.282484	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431719	44477670	ZNF445|ENST00000396077.7	-	44431719,44449512,44450446,44450867,44451313,44455120,44458243,44477590	44448739,44449623,44450573,44450962,44451482,44455696,44458364,44477670	0.655172
omental_fat_pad_male_adult_37_years	chr12	56157343	56157368	56157351	+	High_confidence	8	8	31	1.646344	3.698069	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.903226
omental_fat_pad_male_adult_37_years	chr7	99410112	99410162	99410146	+	High_confidence	5	6	13	0.690402	3.418296	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.615385
omental_fat_pad_male_adult_37_years	chr11	90491710	90491754	90491710	+	RAMPAGE_only	2	3	9	0.477971	2.750000	chr11	90491537	90491872	LTR|ERVL-MaLR|THE1B	+	chr11	90489309	90863696	DISC1FP1|ENST00000562678.5	+	90489309,90546753,90801765,90844879,90852615,90863352	90489352,90546895,90801862,90844957,90852707,90863696	0.555556
omental_fat_pad_male_adult_37_years	chr4	88533222	88533223	88533222	-	RAMPAGE_only	230	237	289	15.348177	6.458472	chr4	88532886	88533429	LTR|ERVL|MLT2A2	-	chr4	88520984	88523813	PYURF|ENST00000273968.4	-	88520984,88523497	88522029,88523813	0.788927
omental_fat_pad_male_adult_37_years	chrX	65601298	65601299	65601298	-	High_confidence	10	13	14	0.743510	3.392747	chrX	65601179	65601311	SINE|MIR|MIR3	+	chrX	65600739	65601181	STRG.67600.1	-	65600739	65601181	0.714286
omental_fat_pad_male_adult_37_years	chr1	113759884	113759899	113759884	-	High_confidence	2	3	6	0.318647	2.584963	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.500000
omental_fat_pad_male_adult_37_years	chr9	110170594	110170776	110170695	+	RAMPAGE_only	39	40	343	18.216002	6.341776	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
omental_fat_pad_male_adult_37_years	chr3	81759021	81759022	81759021	+	High_confidence	24	29	34	1.805668	4.620152	chr3	81758841	81759185	LTR|ERVL-MaLR|THE1B	+	chr3	81758903	81759782	STRG.14244.1	+	81758903	81759782	0.882353
omental_fat_pad_male_adult_37_years	chr5	67646810	67646811	67646810	-	High_confidence	8	10	11	0.584187	2.921928	chr5	67646558	67646761	SINE|MIR|MIRc	-	chr5	67629624	67646761	STRG.20744.1	-	67629624,67634306,67636807,67646605	67633335,67634395,67636948,67646761	0.909091
omental_fat_pad_male_adult_37_years	chr12	105233172	105233181	105233175	-	High_confidence	6	8	26	1.380805	4.403856	chr12	105233175	105233274	LINE|L2|L2c	+	chr12	105177109	105233154	APPL2|ENST00000547809.5	-	105177109,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105233090	105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105233154	0.961538
omental_fat_pad_male_adult_37_years	chr14	101731413	101731414	101731413	+	High_confidence	27	27	38	2.018099	4.682162	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.842105
omental_fat_pad_male_adult_37_years	chr1	70947349	70947396	70947349	+	High_confidence	272	330	1085	57.622048	7.269847	chr1	70947197	70947555	LTR|ERVL-MaLR|THE1A	+	chr1	70947378	70966061	STRG.2284.1	+	70947378,70950734,70950900,70961047,70964845	70947475,70950793,70950994,70961258,70966061	0.911521
omental_fat_pad_male_adult_37_years	chr11	58023791	58023794	58023793	+	High_confidence	4	7	8	0.424863	2.521641	chr11	58023604	58023965	LINE|L2|L2a	-	chr11	58023880	58181587	OR9Q1|NM_001005212.3	+	58023880,58055869,58179430	58024104,58055947,58181587	0.750000
omental_fat_pad_male_adult_37_years	chr3	58565321	58565329	58565328	-	RAMPAGE_only	4	5	8	0.424863	2.521641	chr3	58565323	58565435	DNA|hAT-Charlie|Charlie19a	+	chr3	58564111	58577764	FAM107A|NM_007177.3	-	58564111,58567207,58569690,58570325,58577308	58566695,58567364,58569865,58570423,58577764	0.875000
omental_fat_pad_male_adult_37_years	chr9	68975783	68975855	68975842	-	High_confidence	19	19	92	4.885925	4.928646	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68954922	68975842	STRG.34913.1	-	68954922,68957025,68975663	68954945,68957211,68975842	0.663043
omental_fat_pad_male_adult_37_years	chr7	130882087	130882089	130882088	-	RAMPAGE_only	3	6	8	0.424863	2.521641	chr7	130882066	130882256	SINE|MIR|MIRb	+	chr7	130881761	130913176	LINC-PINT|ENST00000447307.5	-	130881761,130884316,130912109,130912950	130882138,130884396,130912152,130913176	0.625000
omental_fat_pad_male_adult_37_years	chr12	50473533	50473534	50473533	+	RAMPAGE_only	4	5	6	0.318647	2.584963	chr12	50473583	50473802	SINE|Alu|AluSx	+	chr12	50440438	50476456	LARP4|ENST00000520064.2	+	50440438,50441589,50453459,50454313,50461134,50462581,50466958,50473414,50473998,50475525	50440549,50441643,50453672,50454417,50461347,50462630,50467120,50473536,50474107,50476456	0.666667
omental_fat_pad_male_adult_37_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	17	18	39	2.071207	4.649115	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.871795
omental_fat_pad_male_adult_37_years	chr6	30546704	30546784	30546707	-	RAMPAGE_only	14	15	60	3.186473	4.526614	chr6	30546442	30546659	SINE|MIR|MIRb	-	chr6	30541376	30557174	GNL1|ENST00000376621.7	-	30541376,30546695,30547111,30547351,30552466,30553083,30553349,30554574,30554763,30555054,30555554,30556130	30546313,30546836,30547274,30547530,30552661,30553179,30553557,30554646,30554915,30555191,30555720,30557174	0.950000
omental_fat_pad_male_adult_37_years	chr19	9709659	9709660	9709659	+	High_confidence	9	9	9	0.477971	2.947703	chr19	9709309	9709779	LTR|ERV1|LTR10A	+	chr19	9709673	9720210	STRG.60436.1	+	9709673,9719542	9709992,9720210	0.888889
ovary_female_adult_51_years	chr8	30732329	30732330	30732329	+	RAMPAGE_only	4	5	7	0.416286	2.584963	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30744173	30767006	UBXN8|ENST00000380154.9	+	30744173,30751395,30753034,30754664,30756764,30760887,30763272,30766226	30744460,30751518,30753105,30754787,30756887,30760929,30763347,30767006	0.571429
ovary_female_adult_51_years	chr3	139344547	139344548	139344547	+	High_confidence	9	9	13	0.773103	3.251629	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.769231
ovary_female_adult_51_years	chr14	100829554	100829630	100829629	+	High_confidence	6	6	29	1.724615	4.060262	chr14	100829596	100829639	LINE|L2|L2b	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.931034
ovary_female_adult_51_years	chr5	176217560	176217612	176217560	-	High_confidence	4	4	18	1.070451	3.947703	chr5	176216196	176218144	LTR|ERV1|MER83A-int	+	chr5	176184934	176217458	STRG.54411.5	-	176184934,176187402,176204748,176217388	176186380,176187596,176204927,176217458	0.722222
ovary_female_adult_51_years	chr20	37298760	37298761	37298760	+	RAMPAGE_only	12	12	12	0.713634	2.617492	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
ovary_female_adult_51_years	chr12	31959160	31959161	31959160	+	High_confidence	7	7	10	0.594695	3.121928	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959369	31992834	KIAA1551|ENST00000541981.5	+	31959369,31960776,31992377	31959491,31960871,31992834	0.500000
ovary_female_adult_51_years	chr6	2990748	2990755	2990748	-	RAMPAGE_only	16	18	31	1.843554	3.426609	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.806452
ovary_female_adult_51_years	chr9	72363506	72363576	72363575	-	High_confidence	5	9	35	2.081432	4.414439	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72356945	72364346	STRG.83961.11	-	72356945,72360109,72360627	72359521,72360221,72364346	0.971429
ovary_female_adult_51_years	chr11	85682862	85682864	85682862	-	RAMPAGE_only	6	12	13	0.773103	3.084963	chr11	85682520	85682971	DNA|hAT-Tip100|MER115	+	chr11	85657563	85665138	CREBZF|NR_028026.1	-	85657563,85661636,85662388,85663523,85663814	85660597,85661749,85662457,85663601,85665138	0.615385
ovary_female_adult_51_years	chr17	44023138	44023156	44023138	-	RAMPAGE_only	31	33	46	2.735596	4.607977	chr17	44022830	44023425	LTR|ERVL|LTR66	-	chr17	44020792	44021425	STRG.127933.3	-	44020792	44021425	0.608696
ovary_female_adult_51_years	chr4	4033147	4033158	4033157	+	RAMPAGE_only	34	36	134	7.968909	5.511899	chr4	4031112	4033931	LTR|ERV1|HERVS71-int	-	chr4	4074193	4075341	STRG.37711.2	+	4074193	4075341	0.611940
ovary_female_adult_51_years	chr1	236516961	236516971	236516961	+	RAMPAGE_only	5	5	10	0.594695	2.725481	chr1	236516960	236517133	LINE|L1|L1MC5	+	chr1	236517999	236539063	LGALS8|ENST00000481485.5	+	236517999,236523969,236525967,236537496,236538878	236518284,236524061,236526115,236537585,236539063	0.900000
ovary_female_adult_51_years	chr13	93455144	93455185	93455184	+	RAMPAGE_only	14	29	75	4.460210	4.639359	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.840000
ovary_female_adult_51_years	chr7	48201360	48201378	48201377	+	High_confidence	11	13	27	1.605676	4.532665	chr7	48200920	48201458	LTR|ERVK|LTR14C	-	chr7	48201380	48280007	STRG.68237.1	+	48201380,48219353,48221280,48227261,48229824,48234017,48239240,48240866,48244575,48245511,48245862,48248238,48249211,48268979,48271786,48278093	48201832,48219505,48221309,48227425,48229955,48234151,48239405,48241066,48244703,48245612,48246030,48248444,48249351,48269094,48276565,48280007	1.000000
ovary_female_adult_51_years	chr21	42955761	42955787	42955761	-	High_confidence	3	3	11	0.654164	3.121928	chr21	42955408	42955905	LTR|ERV1|HERVE-int	-	chr21	42955313	42955783	STRG.141911.1	-	42955313	42955783	0.636364
ovary_female_adult_51_years	chr16	70011153	70011175	70011174	-	RAMPAGE_only	5	5	10	0.594695	3.169925	chr16	70011026	70011166	LINE|L1|L1ME4a	-	chr16	69993019	70021930	PDXDC2P-NPIPB14P|ENST00000525331.5	-	69993019,69996068,69996389,70010750,70011840,70014103,70018046,70021823	69993248,69996226,69996468,70010856,70011929,70014167,70018097,70021930	0.600000
ovary_female_adult_51_years	chr14	53850797	53850798	53850797	-	High_confidence	11	11	16	0.951512	3.640224	chr14	53850721	53850820	DNA|hAT-Charlie|MER5B	-	chr14	53768941	53850882	LINC02331|ENST00000418927.1	-	53768941,53793253,53849721,53850694	53768963,53793396,53849970,53850882	0.500000
ovary_female_adult_51_years	chr5	55982799	55982800	55982799	-	High_confidence	5	5	8	0.475756	2.807355	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.875000
ovary_female_adult_51_years	chr17	60886978	60887023	60886978	+	High_confidence	4	4	14	0.832573	3.235926	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887278	60989988	BCAS3|ENST00000586484.1	+	60887278,60889694,60902619,60910531,60924406,60947218,60989970	60887447,60889771,60902703,60910702,60924500,60947352,60989988	0.642857
ovary_female_adult_51_years	chr17	29046736	29046737	29046736	+	High_confidence	15	15	18	1.070451	3.616875	chr17	29046763	29046953	SINE|MIR|MIRb	+	chr17	29046639	29056225	PIPOX|ENST00000484308.5	+	29046639,29052919,29053412,29054544,29055062,29055812,29056174	29046847,29053133,29053595,29054691,29055221,29055888,29056225	0.888889
ovary_female_adult_51_years	chr12	10363964	10363974	10363964	+	High_confidence	10	10	17	1.010981	3.375000	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.764706
ovary_female_adult_51_years	chr17	4143196	4143215	4143199	+	High_confidence	186	191	377	22.419991	6.114270	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.970822
ovary_female_adult_51_years	chr2	73982163	73982169	73982163	-	High_confidence	10	10	16	0.951512	3.373557	chr2	73982060	73982404	LINE|L2|L2c	-	chr2	73957966	73981439	DGUOK-AS1|NR_104030.1	-	73957966,73981134	73958207,73981439	0.812500
ovary_female_adult_51_years	chr2	71417037	71417073	71417037	+	RAMPAGE_only	3	3	11	0.654164	3.121928	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.909091
ovary_female_adult_51_years	chr18	8608047	8608067	8608047	+	RAMPAGE_only	3	6	10	0.594695	2.921928	chr18	8607829	8608179	SINE|Alu|AluJr	+	chr18	8609436	8639381	RAB12|ENST00000649141.1	+	8609436,8624937,8633188,8635532,8636252,8638148	8609953,8624998,8633327,8635622,8636357,8639381	1.000000
ovary_female_adult_51_years	chr1	12084156	12084173	12084169	+	High_confidence	8	8	22	1.308328	4.021928	chr1	12084124	12084342	LINE|L2|L2	-	chr1	12084192	12144207	STRG.627.2	+	12084192,12097100,12104378,12109565,12110040,12111897,12115576,12123283,12123714,12125950,12126182,12135587,12138231,12142286	12084551,12097217,12104531,12109656,12110204,12112014,12115729,12123377,12123827,12126052,12126236,12135613,12138436,12144207	0.863636
ovary_female_adult_51_years	chr19	9700673	9700674	9700673	-	High_confidence	8	8	11	0.654164	3.095795	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.727273
ovary_female_adult_51_years	chr3	188947224	188947237	188947236	+	High_confidence	10	11	20	1.189389	3.884184	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.750000
ovary_female_adult_51_years	chr14	106184244	106184264	106184244	+	High_confidence	7	7	23	1.367798	3.970573	chr14	106183625	106184272	LTR|ERV1|LTR6A	-	chr14	106184155	106210141	STRG.116376.2	+	106184155,106193853,106196759,106199202,106205075,106206077	106184353,106193913,106197002,106202463,106205151,106210141	0.869565
ovary_female_adult_51_years	chrX	103431840	103431841	103431840	+	RAMPAGE_only	5	5	8	0.475756	2.521641	chrX	103431274	103435037	LTR|ERV1|HERVH-int	-	chrX	103449305	103476182	STRG.148450.1	+	103449305,103450496,103461214,103475100	103449410,103450660,103461354,103476182	0.625000
ovary_female_adult_51_years	chr15	58865738	58865762	58865738	-	High_confidence	7	7	22	1.308328	4.095795	chr15	58865655	58865936	LTR|ERVL|MER77	-	chr15	58864772	58865756	STRG.119236.1	-	58864772,58865510	58865284,58865756	0.500000
ovary_female_adult_51_years	chr8	12522797	12522821	12522810	+	High_confidence	197	198	552	32.827149	6.423816	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12522048	12568060	STRG.74418.4	+	12522048,12530942,12565885	12522846,12531031,12568060	0.757246
ovary_female_adult_51_years	chr18	36807869	36807870	36807869	-	High_confidence	6	6	8	0.475756	3.000000	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.500000
ovary_female_adult_51_years	chr15	92914950	92914974	92914973	+	High_confidence	6	6	15	0.892042	3.521641	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.600000
ovary_female_adult_51_years	chr19	45450734	45450766	45450765	-	High_confidence	9	9	26	1.546206	4.213661	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.730769
ovary_female_adult_51_years	chr5	77139241	77139279	77139278	+	High_confidence	41	41	135	8.028379	6.286212	chr5	77139300	77139468	LTR|ERVL-MaLR|MLT1H	+	chr5	77139248	77148523	ZBED3-AS1|ENST00000515356.2	+	77139248,77146116,77147651	77139317,77147162,77148523	0.637037
ovary_female_adult_51_years	chr14	23692817	23692876	23692850	+	High_confidence	10	10	53	3.151882	4.187378	chr14	23692551	23693117	LTR|ERV1|LTR61	+	chr14	23692812	23698934	STRG.112192.1	+	23692812,23693105,23696856	23692972,23693346,23698934	0.981132
ovary_female_adult_51_years	chr1	155679929	155679930	155679929	-	High_confidence	12	12	12	0.713634	2.751629	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	1.000000
ovary_female_adult_51_years	chr8	120125627	120125637	120125636	+	High_confidence	6	7	14	0.832573	3.093069	chr8	120125674	120125869	DNA|hAT-Tip100?|MamRep1879	+	chr8	120125143	120277865	COL14A1|ENST00000432943.6	+	120125143,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120277484	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120277865	1.000000
ovary_female_adult_51_years	chr19	20423697	20423704	20423703	-	High_confidence	27	37	64	3.806046	5.269146	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20132513	20423689	STRG.134727.1	-	20132513,20240499,20408949,20423480	20132587,20240637,20409045,20423689	0.500000
ovary_female_adult_51_years	chr2	227534913	227534933	227534932	+	RAMPAGE_only	3	4	10	0.594695	2.947703	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.900000
ovary_female_adult_51_years	chr7	99410146	99410147	99410146	+	High_confidence	4	4	7	0.416286	2.521641	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.571429
ovary_female_adult_51_years	chr20	60031117	60031137	60031136	+	RAMPAGE_only	4	4	14	0.832573	3.467720	chr20	60030933	60031179	LTR|ERV1|MER41A	-	chr20	59989105	60034011	CDH26|ENST00000370991.7	+	59989105,59992377,59994249,59995832,59996630,59999585,60006712,60031230,60033485	59989163,59992520,59994489,59996054,59996761,59999663,60006787,60031426,60034011	0.714286
ovary_female_adult_51_years	chr18	8607975	8608000	8607975	+	RAMPAGE_only	4	5	12	0.713634	2.845351	chr18	8607829	8608179	SINE|Alu|AluJr	+	chr18	8609436	8639381	RAB12|ENST00000649141.1	+	8609436,8624937,8633188,8635532,8636252,8638148	8609953,8624998,8633327,8635622,8636357,8639381	0.833333
ovary_female_adult_51_years	chr11	7906253	7906254	7906253	-	High_confidence	33	37	43	2.557187	4.869747	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.604651
ovary_female_adult_51_years	chr14	106203740	106203763	106203740	+	RAMPAGE_only	24	25	49	2.914004	4.971653	chr14	106197571	106206819	LTR|ERV1|HERVS71-int	-	chr14	106196035	106210141	STRG.116376.4	+	106196035,106199202,106202416,106205075,106206077	106197002,106199354,106202463,106205151,106210141	0.734694
ovary_female_adult_51_years	chr11	65430142	65430227	65430142	+	RAMPAGE_only	5	5	37	2.200370	4.571861	chr11	65430027	65430148	SINE|MIR|MIRb	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.945946
ovary_female_adult_51_years	chr3	151539221	151539414	151539270	-	RAMPAGE_only	13	13	140	8.325726	6.367193	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.700000
ovary_female_adult_51_years	chr18	48621506	48621525	48621508	+	RAMPAGE_only	3	5	10	0.594695	2.947703	chr18	48621468	48621857	LINE|L2|L2a	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	0.700000
ovary_female_adult_51_years	chr5	14653390	14653391	14653390	-	High_confidence	47	48	48	2.854535	4.027132	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.958333
ovary_female_adult_51_years	chr6	110330057	110330070	110330057	-	RAMPAGE_only	3	3	8	0.475756	2.807355	chr6	110329832	110331376	LINE|L1|L1MD2	+	chr6	110239415	110358207	STRG.60944.2	-	110239415,110246131,110298921,110322773,110332439,110357156	110244610,110246260,110299150,110322872,110332565,110358207	0.625000
ovary_female_adult_51_years	chr12	98419906	98419960	98419916	+	High_confidence	3	4	15	0.892042	3.324863	chr12	98419922	98419950	SINE|Alu|FLAM_C	+	chr12	98419835	98423015	STRG.106736.1	+	98419835,98421417,98422458	98419945,98421507,98423015	0.533333
ovary_female_adult_51_years	chr12	91179462	91179549	91179462	-	High_confidence	2594	2697	8873	527.672632	7.746626	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.893046
ovary_female_adult_51_years	chr4	170226587	170226588	170226587	+	High_confidence	7	9	10	0.594695	3.169925	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.700000
ovary_female_adult_51_years	chr9	127642418	127642452	127642428	+	High_confidence	8	9	40	2.378779	4.649115	chr9	127642433	127642559	LINE|CR1|L3	+	chr9	127642342	127663258	STXBP1|ENST00000626333.1	+	127642342,127651602,127653714,127658374,127660029,127661101,127663204	127642563,127651652,127653796,127658451,127660108,127661205,127663258	0.700000
ovary_female_adult_51_years	chr3	188153228	188153257	188153256	+	High_confidence	5	5	9	0.535225	2.725481	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.555556
ovary_female_adult_51_years	chr3	114759249	114759301	114759276	-	High_confidence	10	10	24	1.427267	3.970176	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.666667
ovary_female_adult_51_years	chr2	159428326	159428357	159428356	-	RAMPAGE_only	11	13	31	1.843554	4.651084	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.516129
ovary_female_adult_51_years	chr8	102930239	102930260	102930239	+	High_confidence	9	11	23	1.367798	3.975418	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.826087
ovary_female_adult_51_years	chr3	4782342	4782359	4782358	+	High_confidence	10	11	40	2.378779	4.668980	chr3	4782402	4782508	DNA|hAT-Charlie|MER117	+	chr3	4782339	4788458	ITPR1|ENST00000481415.2	+	4782339,4783815,4787946	4782741,4783920,4788458	0.925000
ovary_female_adult_51_years	chr16	19393876	19393877	19393876	-	High_confidence	22	22	28	1.665145	4.088221	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19244644	19393875	STRG.123157.1	-	19244644,19254619,19367810,19393375	19244775,19254713,19367877,19393875	0.821429
ovary_female_adult_51_years	chr9	121313980	121314021	121314002	+	RAMPAGE_only	20	22	85	5.054905	5.193108	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
ovary_female_adult_51_years	chrX	48683362	48683363	48683362	+	High_confidence	6	9	9	0.535225	2.947703	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
ovary_female_adult_51_years	chr12	53464815	53464829	53464815	+	RAMPAGE_only	5	5	9	0.535225	3.000000	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479614	STRG.104507.14	+	53462513,53464759,53465931,53467220,53468776,53471637,53479405	53462567,53464852,53465973,53467293,53468832,53471807,53479614	0.777778
ovary_female_adult_51_years	chr19	44914321	44914322	44914321	+	High_confidence	64	65	82	4.876497	4.690434	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.878049
ovary_female_adult_51_years	chr11	123060124	123060256	123060168	-	High_confidence	12	13	159	9.455646	5.224300	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.566038
ovary_female_adult_51_years	chr13	29647345	29647361	29647360	+	High_confidence	5	5	15	0.892042	3.506891	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647529	29655478	STRG.108600.1	+	29647529,29655069	29647724,29655478	0.933333
ovary_female_adult_51_years	chr2	109173553	109173554	109173553	+	RAMPAGE_only	23	24	29	1.724615	3.910233	chr2	109173517	109173626	DNA|hAT-Charlie|MER58B	+	chr2	109129540	109504636	SH3RF3|NM_001099289.2	+	109129540,109347673,109371585,109398589,109419538,109432500,109436892,109449169,109490604,109501502	109130113,109347949,109371681,109398943,109419642,109432671,109437146,109449489,109490936,109504636	0.620690
ovary_female_adult_51_years	chr10	53030101	53030112	53030109	-	High_confidence	60	60	165	9.812463	6.320110	chr10	53029943	53030661	LTR|ERV1|LTR30	-	chr10	52973487	53030097	STRG.89331.1	-	52973487,52974664,52975739,53022823,53029910	52973690,52974800,52975813,53022960,53030097	0.606061
ovary_female_adult_51_years	chr1	153088400	153088401	153088400	-	High_confidence	11	11	15	0.892042	3.467720	chr1	153088294	153089274	LTR|ERVK|LTR5A	-	chr1	153087194	153088058	STRG.6982.1	-	153087194	153088058	0.600000
ovary_female_adult_51_years	chr7	23727605	23727632	23727605	+	High_confidence	2	2	11	0.654164	2.846439	chr7	23727553	23727859	SINE|Alu|AluSx1	-	chr7	23728119	23832494	STRG.66710.2	+	23728119,23729090,23735537,23736903,23752716,23754314,23762800,23768994,23769639,23771004,23781418,23783582,23785477,23786507,23786837,23787979,23790823,23815143,23832135	23728205,23729249,23735896,23737078,23752832,23754474,23762923,23769174,23769756,23772278,23781520,23783663,23785603,23786633,23786924,23788129,23790946,23815212,23832494	0.818182
ovary_female_adult_51_years	chr12	104030726	104030727	104030726	+	High_confidence	13	13	16	0.951512	3.577820	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.937500
ovary_female_adult_51_years	chr10	67387430	67387468	67387467	-	High_confidence	6	6	16	0.951512	3.456565	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67219475	67387055	STRG.89737.2	-	67219475,67386985	67219870,67387055	0.500000
ovary_female_adult_51_years	chr4	44866703	44866720	44866703	+	High_confidence	6	6	12	0.713634	2.913977	chr4	44864689	44868696	LINE|L1|L1PA16	-	chr4	44866910	44985575	STRG.40238.2	+	44866910,44871805,44892957,44985249	44867031,44871902,44893082,44985575	0.750000
ovary_female_adult_51_years	chr1	159005961	159005962	159005961	+	High_confidence	7	8	9	0.535225	3.000000	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.888889
ovary_female_adult_51_years	chr2	9554953	9554991	9554953	-	High_confidence	4	4	13	0.773103	3.251629	chr2	9554869	9555063	DNA|hAT-Tip100?|MamRep1879	-	chr2	9488636	9554729	ADAM17|ENST00000648548.1	-	9488636,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152,9551474,9554708	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526264,9527954,9535922,9536828,9543285,9551757,9554729	0.692308
ovary_female_adult_51_years	chr3	134485443	134485490	134485443	-	High_confidence	13	14	75	4.460210	5.386685	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.920000
ovary_female_adult_51_years	chr19	17336685	17336686	17336685	+	High_confidence	11	11	12	0.713634	3.277613	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.750000
ovary_female_adult_51_years	chr1	24151504	24151543	24151504	+	High_confidence	7	7	21	1.248859	3.975418	chr1	24151159	24151642	LTR|ERV1|LTR10D	-	chr1	24151518	24158034	STRG.1108.1	+	24151518,24155011,24157254	24151739,24155192,24158034	0.904762
ovary_female_adult_51_years	chr3	194486565	194486586	194486575	-	High_confidence	2	2	7	0.416286	2.584963	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.571429
ovary_female_adult_51_years	chr2	223944130	223944138	223944130	+	RAMPAGE_only	3	3	9	0.535225	2.750000	chr2	223944006	223944148	DNA|hAT-Charlie|MER113	+	chr2	223957403	223967714	MRPL44|ENST00000258383.3	+	223957403,223959533,223963755,223966862	223957651,223960002,223963934,223967714	0.555556
ovary_female_adult_51_years	chr4	54296697	54296702	54296697	+	RAMPAGE_only	6	7	13	0.773103	3.022055	chr4	54296613	54296722	DNA|hAT-Charlie|MER5B	-	chr4	54229096	54298247	PDGFRA|ENST00000257290.9	+	54229096,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54280315,54285370,54285840,54287429,54288798,54289008,54290312,54295124	54229415,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54280482,54285486,54285963,54287541,54288898,54289114,54290554,54298247	0.923077
ovary_female_adult_51_years	chr1	246069138	246069158	246069157	-	High_confidence	5	6	13	0.773103	3.418296	chr1	246069083	246069146	SINE|MIR|MIR	-	chr1	245749341	246069157	STRG.12561.2	-	245749341,245764040,245858495,245863798,245915529,245927930,245929869,246068900	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246069157	0.769231
ovary_female_adult_51_years	chr4	78971802	78971848	78971841	+	High_confidence	3	3	17	1.010981	3.454822	chr4	78971775	78972175	LINE|L1|L1MA7	-	chr4	78971747	79308799	LINC01088|NR_038342.1	+	78971747,78972999,79086095,79195835,79306690,79308272	78971876,78973052,79086262,79195932,79306728,79308799	0.764706
ovary_female_adult_51_years	chr16	2769820	2769878	2769820	+	High_confidence	4	5	26	1.546206	4.469670	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2770934	SRRM2|ENST00000574866.1	+	2769894,2770351,2770603,2770857	2770227,2770465,2770717,2770934	0.961538
ovary_female_adult_51_years	chr6	118574394	118574397	118574394	+	High_confidence	30	33	48	2.854535	4.477376	chr6	118574043	118574503	LTR|ERV1|LTR10B2	+	chr6	118574315	118586605	STRG.61217.1	+	118574315,118576250,118586544	118574699,118576475,118586605	0.833333
ovary_female_adult_51_years	chr22	18149858	18149869	18149868	+	High_confidence	6	6	18	1.070451	3.725481	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
ovary_female_adult_51_years	chr12	8697193	8697305	8697195	+	High_confidence	34	73	160	9.515116	6.250154	chr12	8697043	8697239	SINE|MIR|MIRc	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.712500
ovary_female_adult_51_years	chrX	103577211	103577213	103577211	+	High_confidence	5	11	11	0.654164	3.095795	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
ovary_female_adult_51_years	chr16	75376730	75376746	75376730	-	RAMPAGE_only	6	6	19	1.129920	4.037401	chr16	75376668	75377149	LTR|ERV1|MER66B	+	chr16	75293905	75363035	CFDP1|ENST00000564793.1	-	75293905,75305023,75362874	75294042,75305182,75363035	0.842105
ovary_female_adult_51_years	chr7	11192977	11192978	11192977	+	High_confidence	11	12	17	1.010981	3.875000	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193351	11383869	STRG.66065.1	+	11193351,11244257,11248292,11379286,11383796	11193422,11244479,11248375,11379369,11383869	0.705882
ovary_female_adult_51_years	chr16	15006394	15006395	15006394	+	RAMPAGE_only	6	6	6	0.356817	2.584963	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.500000
ovary_female_adult_51_years	chr14	101731413	101731433	101731413	+	High_confidence	5	5	15	0.892042	3.506891	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.866667
ovary_female_adult_51_years	chr8	30731746	30731752	30731751	+	RAMPAGE_only	82	84	169	10.050341	6.208733	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30728971	30763322	STRG.75640.2	+	30728971,30731528,30744327,30751395,30753034,30754664,30756764,30760887,30763272	30729345,30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763322	0.928994
ovary_female_adult_51_years	chrX	47382328	47382364	47382328	+	RAMPAGE_only	2	2	12	0.713634	3.251629	chrX	47382282	47382433	SINE|Alu|AluSx	-	chrX	47370599	47413699	ZNF157|NM_003446.3	+	47370599,47410275,47410679,47412368	47370740,47410402,47410775,47413699	0.833333
ovary_female_adult_51_years	chr4	79086179	79086180	79086179	+	High_confidence	6	8	9	0.535225	2.750000	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.666667
ovary_female_adult_51_years	chr15	75879161	75879162	75879161	+	High_confidence	6	6	8	0.475756	2.750000	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75878185	75897062	UBE2Q2|ENST00000563966.1	+	75878185,75879097,75883365,75890434,75890918,75896994	75878360,75879188,75883424,75890483,75891014,75897062	0.750000
ovary_female_adult_51_years	chr1	16017942	16017957	16017942	-	High_confidence	4	6	11	0.654164	2.913977	chr1	16017886	16017984	LINE|CR1|L3	+	chr1	16015498	16018005	HSPB7|ENST00000406363.2	-	16015498,16017073,16017764	16015759,16017219,16018005	0.818182
ovary_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	62	62	62	3.687107	5.073080	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.870968
ovary_female_adult_51_years	chr18	8607891	8607898	8607891	+	RAMPAGE_only	3	3	12	0.713634	3.418296	chr18	8607829	8608179	SINE|Alu|AluJr	+	chr18	8609436	8639381	RAB12|ENST00000649141.1	+	8609436,8624937,8633188,8635532,8636252,8638148	8609953,8624998,8633327,8635622,8636357,8639381	0.583333
ovary_female_adult_51_years	chr6	77369031	77369032	77369031	-	RAMPAGE_only	7	7	7	0.416286	2.521641	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77151126	77273309	STRG.59450.2	-	77151126,77271339,77273026	77151280,77271493,77273309	1.000000
ovary_female_adult_51_years	chr5	127707055	127707082	127707055	+	High_confidence	6	6	29	1.724615	4.450212	chr5	127706615	127707336	LINE|L2|L2a	-	chr5	127707707	127941612	STRG.51835.1	+	127707707,127754267,127797102,127798105,127875537,127941181	127707760,127754375,127797234,127798162,127875661,127941612	0.655172
ovary_female_adult_51_years	chr4	69051395	69051510	69051430	+	High_confidence	58	68	267	15.878349	6.518694	chr4	69051337	69051715	LTR|ERV1|Harlequin-int	+	chr4	69051362	69066309	STRG.40761.7	+	69051362,69062552	69051602,69066309	0.820225
ovary_female_adult_51_years	chr19	52200809	52200864	52200860	-	High_confidence	18	18	73	4.341272	5.247886	chr19	52200544	52200922	LTR|ERVL-MaLR|MLT1C	-	chr19	52199628	52200490	STRG.136864.1	-	52199628	52200490	0.739726
ovary_female_adult_51_years	chr12	104864879	104864979	104864978	+	High_confidence	335	336	1427	84.862938	6.617304	chr12	104863461	104865746	LINE|L1|HAL1	-	chr12	104864916	104871779	STRG.107128.1	+	104864916,104869020,104870161	104865071,104869181,104871779	0.899790
ovary_female_adult_51_years	chr11	112176365	112176371	112176365	+	High_confidence	3	3	8	0.475756	2.750000	chr11	112176309	112176508	LINE|L2|L2c	-	chr11	112176365	112218929	BCO2|NM_001256397.1	+	112176365,112179277,112193473,112193878,112194652,112199698,112200612,112202022,112213723,112214761,112216219,112217760	112176458,112179482,112193697,112193994,112194755,112199827,112200773,112202190,112213861,112214926,112216330,112218929	1.000000
ovary_female_adult_51_years	chr15	65642906	65642933	65642932	+	High_confidence	4	5	14	0.832573	3.334679	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	0.928571
ovary_female_adult_51_years	chr19	16101951	16102507	16102289	+	RAMPAGE_only	108	131	983	58.458492	5.386580	chr19	16102068	16102357	SINE|Alu|AluSz	+	chr19	16088710	16102946	TPM4|ENST00000591645.2	+	16088710,16089044,16093535,16093683,16101263	16088849,16089120,16093598,16093753,16102946	0.993896
ovary_female_adult_51_years	chr1	230605024	230605031	230605030	-	High_confidence	8	12	19	1.129920	4.058814	chr1	230604919	230605422	LTR|ERV1|HERVH-int	+	chr1	230556143	230604949	STRG.11519.3	-	230556143,230604663	230556361,230604949	0.736842
ovary_female_adult_51_years	chr12	10710653	10710654	10710653	-	High_confidence	6	6	9	0.535225	3.000000	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10699426	10710120	YBX3|ENST00000546164.5	-	10699426,10701253,10701959,10704059,10709907	10699654,10701353,10702134,10704148,10710120	0.777778
ovary_female_adult_51_years	chr2	119355984	119356019	119356018	-	RAMPAGE_only	5	5	14	0.832573	3.235926	chr2	119355811	119356120	LINE|L1|L1MC	+	chr2	119302443	119366682	C2orf76|ENST00000409877.5	-	119302443,119311621,119317465,119321153,119339826,119340158,119366356	119302548,119311703,119317503,119321204,119339971,119340361,119366682	0.714286
ovary_female_adult_51_years	chr6	118651542	118651626	118651592	-	High_confidence	35	35	200	11.893895	6.283078	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118460771	118651857	CEP85L|NM_001042475.2	-	118460771,118469071,118470536,118479870,118480395,118481778,118483705,118491685,118511297,118523801,118565528,118632452,118651196	118465568,118469303,118470644,118479921,118480513,118481933,118483858,118491865,118511415,118523920,118566316,118632611,118651857	0.975000
ovary_female_adult_51_years	chr5	151158498	151158502	151158498	-	High_confidence	15	15	29	1.724615	4.102679	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.862069
ovary_female_adult_51_years	chr6	159681724	159681753	159681736	-	RAMPAGE_only	2	2	7	0.416286	2.584963	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	0.714286
ovary_female_adult_51_years	chr4	22599614	22599615	22599614	+	High_confidence	407	416	474	28.188530	6.096683	chr4	22599245	22599724	LTR|ERV1|LTR2B	+	chr4	22599583	22819569	STRG.39365.1	+	22599583,22665129,22735980,22818720	22599989,22665263,22736208,22819569	0.533755
ovary_female_adult_51_years	chr4	190112695	190112696	190112695	-	High_confidence	56	57	77	4.579149	5.481287	chr4	190112541	190113546	LTR|ERVK|LTR5B	-	chr4	190105434	190112684	STRG.47128.1	-	190105434,190108848,190112435	190107357,190109161,190112684	0.714286
ovary_female_adult_51_years	chr9	39810075	39810116	39810098	-	High_confidence	13	13	45	2.676126	4.896821	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39777349	39810097	GLIDR|ENST00000638724.1	-	39777349,39778893,39809485,39809730	39778566,39778944,39809615,39810097	0.511111
ovary_female_adult_51_years	chr12	26832690	26832767	26832766	-	High_confidence	4	5	22	1.308328	3.970573	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.727273
ovary_female_adult_51_years	chr3	150852480	150852481	150852480	+	High_confidence	80	81	88	5.233314	5.501611	chr3	150852347	150852815	LTR|ERVL|MER70B	+	chr3	150852300	150873885	STRG.34164.1	+	150852300,150870393	150852606,150873885	0.647727
ovary_female_adult_51_years	chr7	11193340	11193367	11193340	+	High_confidence	15	16	30	1.784084	4.256565	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193351	11383869	STRG.66065.1	+	11193351,11244257,11248292,11379286,11383796	11193422,11244479,11248375,11379369,11383869	0.966667
ovary_female_adult_51_years	chr3	179681645	179681666	179681665	+	RAMPAGE_only	7	7	14	0.832573	3.238901	chr3	179681222	179681750	LTR|ERV1|LTR6A	-	chr3	179653692	179784406	USP13|ENST00000496897.5	+	179653692,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653750,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179784406	0.928571
ovary_female_adult_51_years	chr3	125123613	125123618	125123617	-	High_confidence	9	15	27	1.605676	4.209867	chr3	125123512	125123811	LTR|ERVL-MaLR|THE1B	-	chr3	125083142	125123599	SLC12A8|ENST00000465475.5	-	125083142,125107480,125110188,125118768,125120598,125123529	125084052,125108126,125110335,125118856,125120686,125123599	0.592593
ovary_female_adult_51_years	chr20	46771325	46771387	46771331	-	High_confidence	10	13	39	2.319309	4.406821	chr20	46771216	46771439	LINE|L2|L2b	+	chr20	46765412	46771361	STRG.139386.1	-	46765412,46771222	46765824,46771361	0.717949
ovary_female_adult_51_years	chr2	229232040	229232054	229232053	-	High_confidence	10	10	17	1.010981	3.969816	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.705882
ovary_female_adult_51_years	chr14	106193602	106193684	106193602	+	High_confidence	12	12	78	4.638619	5.416499	chr14	106192967	106193706	LTR|ERVL-MaLR|MSTB-int	-	chr14	106193250	106210141	STRG.116376.5	+	106193250,106196759,106199016,106205075,106206077	106193913,106197002,106202463,106205151,106210141	0.858974
ovary_female_adult_51_years	chr17	44019414	44019415	44019414	-	High_confidence	12	12	16	0.951512	3.155639	chr17	44019061	44019706	LTR|ERVL|LTR66	-	chr17	44014489	44019442	TMEM101|ENST00000586174.1	-	44014489,44014815,44019237	44014537,44015155,44019442	0.812500
ovary_female_adult_51_years	chr18	80148048	80148049	80148048	+	High_confidence	59	61	67	3.984455	5.462914	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.582090
ovary_female_adult_51_years	chr6	108961028	108961030	108961028	+	High_confidence	13	16	20	1.189389	3.826875	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108960923	108973983	STRG.60848.5	+	108960923,108961571,108962013,108964179,108964979,108973356	108961104,108961694,108962127,108964312,108965140,108973983	0.850000
ovary_female_adult_51_years	chr12	15218755	15218756	15218755	-	High_confidence	5	5	8	0.475756	2.807355	chr12	15218438	15219229	LINE|CR1|L3	-	chr12	15107816	15218051	RERG|ENST00000536465.5	-	15107816,15111343,15121062,15217428,15217924	15109517,15111417,15121119,15217603,15218051	0.625000
ovary_female_adult_51_years	chr1	166850123	166850135	166850123	+	RAMPAGE_only	3	5	9	0.535225	2.725481	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
ovary_female_adult_51_years	chr2	100277508	100277561	100277560	-	RAMPAGE_only	5	5	12	0.713634	3.584963	chr2	100276116	100277904	LTR|ERVL|HERVL74-int	+	chr2	100273290	100322733	LONRF2|ENST00000393437.7	-	100273290,100286913,100290257,100294228,100295431,100298835,100299225,100299716,100300643,100302920,100309106,100321414	100284492,100287063,100290420,100294387,100295553,100298950,100299319,100299918,100300787,100303043,100309225,100322733	1.000000
ovary_female_adult_51_years	chrX	119127813	119127818	119127817	-	High_confidence	6	6	12	0.713634	3.277613	chrX	119127624	119127833	LINE|L2|L2a	+	chrX	119105017	119127820	STRG.149220.1	-	119105017,119108336,119109075,119116495,119123581,119127726	119105147,119108471,119109202,119116664,119123652,119127820	0.833333
ovary_female_adult_51_years	chr9	39809858	39809865	39809858	-	High_confidence	7	8	16	0.951512	3.456565	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803389	39810063	STRG.82853.1	-	39803389,39809485,39809730	39803859,39809615,39810063	0.812500
ovary_female_adult_51_years	chr13	98988460	98988461	98988460	-	RAMPAGE_only	30	31	31	1.843554	4.028073	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98793486	98978084	DOCK9|NM_001130048.1	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,98977783	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,98978084	0.903226
ovary_female_adult_51_years	chr9	121281850	121281852	121281850	+	RAMPAGE_only	3	5	8	0.475756	2.500000	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.500000
ovary_female_adult_51_years	chr8	102930126	102930183	102930162	+	High_confidence	109	109	563	33.481313	7.521714	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.840142
ovary_female_adult_51_years	chrX	28206919	28206965	28206945	-	High_confidence	6	6	27	1.605676	3.199332	chrX	28206791	28212789	LINE|L1|L1PA2	+	chrX	28185922	28207227	STRG.145022.1	-	28185922,28206784	28186087,28207227	0.814815
ovary_female_adult_51_years	chr8	69357200	69357222	69357208	+	RAMPAGE_only	4	4	18	1.070451	3.572469	chr8	69351385	69357434	LINE|L1|L1PA3	-	chr8	69466623	69660912	SULF1|ENST00000260128.8	+	69466623,69495764,69501873,69563538,69563915,69575969,69586356,69588971,69600602,69601653,69603191,69603599,69604802,69621034,69623941,69627209,69627771,69628170,69629503,69638501,69638734,69640807,69658504	69466950,69495926,69501968,69563611,69564147,69576209,69586508,69589141,69600753,69601829,69603320,69603656,69604932,69621251,69624197,69627306,69627866,69628236,69629679,69638644,69638858,69640841,69660912	0.722222
ovary_female_adult_51_years	chr13	52236182	52236228	52236227	-	High_confidence	6	8	26	1.546206	4.315824	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.615385
ovary_female_adult_51_years	chr19	48868595	48868617	48868595	-	High_confidence	251	260	1088	64.702786	7.533772	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.975184
ovary_female_adult_51_years	chr3	101467055	101467064	101467055	-	High_confidence	3	3	8	0.475756	2.750000	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101349820	101467297	STRG.30695.7	-	101349820,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101402966,101417592,101458954,101466808	101350262,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101403047,101417790,101459052,101467297	1.000000
ovary_female_adult_51_years	chr7	38003254	38003263	38003262	+	RAMPAGE_only	8	8	17	1.010981	3.500000	chr7	38001154	38003757	LINE|L1|L1MEf	-	chr7	38010766	38011654	STRG.67803.1	+	38010766	38011654	0.588235
ovary_female_adult_51_years	chr8	11795578	11795579	11795578	+	High_confidence	35	35	38	2.259840	4.445544	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.973684
ovary_female_adult_51_years	chr10	93431493	93431495	93431494	-	RAMPAGE_only	3	5	8	0.475756	2.521641	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.500000
ovary_female_adult_51_years	chr3	190307182	190307240	190307182	-	RAMPAGE_only	3	3	20	1.189389	3.826875	chr3	190307074	190307239	SINE|MIR|MIRb	-	chr3	190305700	190322446	CLDN1|NM_021101.4	-	190305700,190310168,190312871,190321983	190308439,190310253,190313036,190322446	0.950000
ovary_female_adult_51_years	chr20	35713417	35713449	35713417	-	High_confidence	3	3	8	0.475756	2.521641	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35705261	35713415	RBM39|ENST00000470563.5	-	35705261,35707119,35709223,35713018,35713293	35705330,35707201,35709256,35713096,35713415	0.500000
ovary_female_adult_51_years	chr6	118574339	118574364	118574342	+	High_confidence	3	3	13	0.773103	3.180833	chr6	118574043	118574503	LTR|ERV1|LTR10B2	+	chr6	118574315	118586605	STRG.61217.1	+	118574315,118576250,118586544	118574699,118576475,118586605	0.923077
ovary_female_adult_51_years	chr4	3929639	3929668	3929659	-	High_confidence	9	9	22	1.308328	4.121928	chr4	3927854	3930775	LTR|ERV1|HERVH-int	+	chr4	3920795	3929716	STRG.37700.1	-	3920795,3924070,3929541	3921782,3924267,3929716	0.772727
ovary_female_adult_51_years	chr17	28238661	28238667	28238661	-	RAMPAGE_only	9	10	22	1.308328	4.186704	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.500000
ovary_female_adult_51_years	chr18	80147929	80147932	80147929	+	High_confidence	8	8	18	1.070451	4.169925	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80147923	80178432	PARD6G-AS1|NR_028340.1	+	80147923,80175879,80178085	80148254,80175935,80178432	0.555556
ovary_female_adult_51_years	chr1	35146357	35146391	35146390	-	High_confidence	3	3	9	0.535225	2.947703	chr1	35145875	35146564	LTR|ERV1|HERV3-int	-	chr1	35141514	35146435	AL590434.1|ENST00000641402.1	-	35141514,35144866,35146298	35143033,35145096,35146435	0.777778
ovary_female_adult_51_years	chr21	29434287	29434306	29434287	+	High_confidence	6	12	24	1.427267	4.277613	chr21	29434091	29434453	LTR|ERVL-MaLR|THE1B	+	chr21	29434257	29630745	STRG.141231.2	+	29434257,29597569,29630538	29434369,29597694,29630745	0.541667
ovary_female_adult_51_years	chr18	46087012	46087061	46087042	-	High_confidence	3	3	10	0.594695	2.921928	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.800000
ovary_female_adult_51_years	chr17	28233986	28234046	28234030	-	RAMPAGE_only	8	8	53	3.151882	4.905378	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28230560	28235195	STRG.126927.1	-	28230560,28233917	28233342,28235195	0.849057
ovary_female_adult_51_years	chr6	79631256	79631329	79631302	+	High_confidence	59	59	259	15.402593	6.393985	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.949807
ovary_female_adult_51_years	chr4	3929580	3929599	3929598	-	High_confidence	10	13	22	1.308328	3.975418	chr4	3927854	3930775	LTR|ERV1|HERVH-int	+	chr4	3920795	3929716	STRG.37700.1	-	3920795,3924070,3929541	3921782,3924267,3929716	0.818182
ovary_female_adult_51_years	chr18	7946878	7946898	7946878	+	High_confidence	91	91	222	13.202223	6.320541	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.684685
ovary_female_adult_51_years	chr16	29251240	29251257	29251240	+	RAMPAGE_only	7	7	13	0.773103	3.238901	chr16	29251098	29251318	LINE|L2|L2a	+	chr16	29139662	29365059	STRG.123544.3	+	29139662,29251478,29302286,29312351,29320927,29326346,29328561,29355786,29359264,29361249,29364683	29139799,29251721,29302388,29312589,29321095,29326483,29328624,29355968,29359335,29361495,29365059	0.923077
ovary_female_adult_51_years	chr20	3795750	3795783	3795750	+	High_confidence	19	20	94	5.590130	5.731354	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
ovary_female_adult_51_years	chr10	78977923	78977926	78977923	-	RAMPAGE_only	3	4	6	0.356817	2.584963	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78962394	ZMIZ1-AS1|ENST00000428862.5	-	78943327,78945911,78960504,78961253	78944747,78945989,78960716,78962394	0.666667
ovary_female_adult_51_years	chr4	44871785	44871805	44871785	+	RAMPAGE_only	3	3	7	0.416286	2.521641	chr4	44871592	44871983	LTR|ERVL-MaLR|MSTA	+	chr4	44867468	44985575	STRG.40238.3	+	44867468,44871805,44892966,44985249	44867501,44871902,44893082,44985575	0.857143
ovary_female_adult_51_years	chr15	90413285	90413306	90413285	+	RAMPAGE_only	2	3	7	0.416286	2.584963	chr15	90413281	90413747	LTR|ERV1|MER84	-	chr15	90388246	90500854	IQGAP1|ENST00000633485.1	+	90388246,90390773,90426109,90429588,90433718,90439331,90440501,90441505,90443393,90448572,90449558,90452774,90453131,90454427,90456151,90466000,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90482701,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390873,90426266,90429666,90433795,90439399,90440615,90441684,90443478,90448736,90449643,90452938,90453292,90454552,90456315,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90482749,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500854	0.571429
ovary_female_adult_51_years	chr13	106561950	106561951	106561950	-	High_confidence	51	52	55	3.270821	5.215552	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.672727
ovary_female_adult_51_years	chr9	125538282	125538283	125538282	+	RAMPAGE_only	7	7	9	0.535225	2.500000	chr9	125538091	125538491	LINE|L2|L2	-	chr9	125539437	125541387	STRG.86774.1	+	125539437,125541134	125539449,125541387	0.888889
ovary_female_adult_51_years	chr12	27579337	27579393	27579392	+	RAMPAGE_only	2	2	7	0.416286	2.807355	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27524255	27695564	PPFIBP1|ENST00000228425.10	+	27524255,27578151,27633361,27634909,27646061,27647728,27650009,27654721,27656615,27658815,27660883,27664361,27667165,27671430,27672426,27673766,27674191,27676427,27677063,27679488,27679932,27681545,27682386,27682614,27687384,27688297,27689014,27691748,27692590,27692795	27524365,27578239,27633460,27635115,27646148,27647842,27650141,27654814,27656730,27658848,27660945,27664446,27667320,27671546,27672483,27673827,27674221,27676599,27677096,27679639,27680061,27681696,27682498,27682703,27687507,27688423,27689203,27691928,27692656,27695564	0.857143
ovary_female_adult_51_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	9	9	11	0.654164	3.277613	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.727273
ovary_female_adult_51_years	chr10	6737414	6737433	6737414	+	High_confidence	27	28	63	3.746577	5.250702	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.746032
ovary_female_adult_51_years	chr13	114047458	114047468	114047467	-	RAMPAGE_only	15	16	36	2.140901	4.513646	chr13	114046747	114047654	LINE|L1|L1M5	+	chr13	114021408	114036193	RASA3|ENST00000542651.2	-	114021408,114024278,114027388,114027842,114029810,114035625	114021508,114024355,114027456,114027927,114029887,114036193	0.805556
ovary_female_adult_51_years	chr11	77571348	77571352	77571351	+	High_confidence	8	9	16	0.951512	3.250000	chr11	77570921	77571455	LTR|ERV1|LTR61	+	chr11	77571088	77575662	LOC646029|NR_130930.1	+	77571088,77571514,77574210	77571310,77571685,77575662	1.000000
ovary_female_adult_51_years	chr16	81181319	81181335	81181330	-	High_confidence	6	6	14	0.832573	3.807355	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.928571
ovary_female_adult_51_years	chr12	79455468	79455539	79455514	-	High_confidence	106	117	455	27.058610	6.772102	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.865934
ovary_female_adult_51_years	chr7	120780490	120780535	120780518	-	High_confidence	16	18	57	3.389760	5.204240	chr7	120779457	120782483	LTR|ERV1|HERVH-int	-	chr7	120736514	120780665	STRG.71600.2	-	120736514,120752323,120780346	120752018,120752432,120780665	0.771930
ovary_female_adult_51_years	chr11	65439567	65439659	65439629	+	RAMPAGE_only	4	4	30	1.784084	3.840224	chr11	65439400	65439684	SINE|Alu|AluSz6	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
ovary_female_adult_51_years	chr17	47067498	47067518	47067498	-	High_confidence	91	93	344	20.457499	5.716942	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.915698
ovary_female_adult_51_years	chr4	2867835	2867851	2867850	+	High_confidence	4	4	12	0.713634	2.913977	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.916667
ovary_female_adult_51_years	chr19	20611504	20611523	20611504	+	High_confidence	13	15	52	3.092413	4.748758	chr19	20611050	20611625	LTR|ERV1|LTR61	+	chr19	20611558	20615389	AC010636.1|ENST00000598116.1	+	20611558,20615058	20611855,20615389	0.730769
ovary_female_adult_51_years	chr11	44564423	44564431	44564426	+	High_confidence	10	10	26	1.546206	4.418296	chr11	44564373	44564477	SINE|MIR|MIRc	+	chr11	44564426	44615295	CD82|ENST00000526958.5	+	44564426,44587474,44594642,44600157,44605057,44605354,44615271	44564502,44587556,44594725,44600230,44605182,44605429,44615295	0.846154
ovary_female_adult_51_years	chr3	111911611	111911613	111911611	+	High_confidence	8	15	18	1.070451	3.852169	chr3	111911655	111911757	DNA|hAT-Ac|OldhAT1	+	chr3	111911609	111976465	PHLDB2|ENST00000495180.1	+	111911609,111913318,111919071,111920281,111932268,111939474,111940534,111945267,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111911724,111913702,111919215,111920419,111932397,111939630,111940645,111945357,111954029,111962312,111966703,111967824,111969909,111973817,111976465	0.777778
ovary_female_adult_51_years	chr20	61956487	61956488	61956487	-	High_confidence	15	15	15	0.892042	3.456565	chr20	61956382	61956961	LTR|ERV1|LTR61	-	chr20	61953042	61956529	STRG.139977.7	-	61953042,61956455	61953828,61956529	0.800000
ovary_female_adult_51_years	chr7	10085480	10085490	10085489	-	High_confidence	52	52	109	6.482173	5.921192	chr7	10085029	10085727	LTR|ERV1|MER50	-	chr7	9758756	10085477	STRG.65838.2	-	9758756,10085275	9760063,10085477	0.614679
ovary_female_adult_51_years	chr1	12084289	12084290	12084289	+	High_confidence	5	5	8	0.475756	2.521641	chr1	12084124	12084342	LINE|L2|L2	-	chr1	12084192	12144207	STRG.627.2	+	12084192,12097100,12104378,12109565,12110040,12111897,12115576,12123283,12123714,12125950,12126182,12135587,12138231,12142286	12084551,12097217,12104531,12109656,12110204,12112014,12115729,12123377,12123827,12126052,12126236,12135613,12138436,12144207	0.875000
ovary_female_adult_51_years	chr11	67884995	67885003	67885002	+	RAMPAGE_only	4	4	10	0.594695	2.646439	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.700000
ovary_female_adult_51_years	chr9	97188694	97188711	97188710	-	RAMPAGE_only	9	9	20	1.189389	3.932138	chr9	97188625	97188759	LTR|ERVL-MaLR|MLT1L	+	chr9	97156569	97221235	ANKRD18CP|ENST00000354752.5	-	97156569,97160181,97161754,97162564,97170606,97172947,97178263,97179996,97185441,97187453,97191730,97194702,97200458,97204860,97211372,97221029	97156585,97160402,97161966,97162846,97170736,97173060,97178413,97180916,97185515,97187507,97191798,97194840,97200565,97205034,97211487,97221235	0.750000
ovary_female_adult_51_years	chr9	72874117	72874135	72874134	-	High_confidence	4	5	11	0.654164	3.121928	chr9	72873937	72874322	LTR|ERVL-MaLR|MSTA	-	chr9	72871727	72874109	LINC01474|NR_121120.1	-	72871727,72872108,72873026,72874015	72872020,72872231,72873155,72874109	0.727273
ovary_female_adult_51_years	chr1	235589035	235589075	235589047	-	High_confidence	4	5	26	1.546206	4.168296	chr1	235589032	235589593	LTR|ERVL|LTR18B	+	chr1	235551753	235588959	GNG4|ENST00000484517.2	-	235551753,235583739,235588868	235552237,235583848,235588959	0.846154
ovary_female_adult_51_years	chr2	86285668	86285683	86285668	-	RAMPAGE_only	3	3	9	0.535225	2.750000	chr2	86285416	86285647	SINE|MIR|MIR	-	chr2	86215318	86282232	REEP1|ENST00000644644.1	-	86215318,86219969,86227362,86232624,86240020,86251956,86254693,86263964,86282169	86217110,86220121,86227398,86232802,86240071,86252070,86254814,86264041,86282232	0.666667
ovary_female_adult_51_years	chr14	81192644	81192670	81192644	-	RAMPAGE_only	2	2	10	0.594695	3.169925	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.900000
ovary_female_adult_51_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	15	15	15	0.892042	2.840224	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
ovary_female_adult_51_years	chr3	52615417	52615438	52615426	-	High_confidence	3	3	12	0.713634	3.251629	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.916667
ovary_female_adult_51_years	chr1	35146599	35146600	35146599	-	High_confidence	9	9	13	0.773103	3.392747	chr1	35145875	35146564	LTR|ERV1|HERV3-int	-	chr1	35141514	35146435	AL590434.1|ENST00000641402.1	-	35141514,35144866,35146298	35143033,35145096,35146435	1.000000
ovary_female_adult_51_years	chr18	2589120	2589121	2589120	+	RAMPAGE_only	9	10	10	0.594695	3.169925	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	0.900000
ovary_female_adult_51_years	chr2	36513735	36513760	36513735	+	High_confidence	3	5	11	0.654164	3.095795	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.818182
ovary_female_adult_51_years	chr10	37857462	37857481	37857480	-	High_confidence	3	3	10	0.594695	2.947703	chr10	37857478	37857541	SINE|MIR|MIR	-	chr10	37802822	37857551	ZNF248|ENST00000485560.5	-	37802822,37803832,37833024,37837616,37837984,37856295,37857184	37803692,37803943,37833116,37837712,37838111,37856337,37857551	0.500000
ovary_female_adult_51_years	chr4	80301327	80301328	80301327	+	RAMPAGE_only	112	113	113	6.720050	5.713988	chr4	80301302	80301442	DNA|TcMar-Tigger|Tigger9b	+	chr4	80335719	80963756	C4orf22|NM_152770.2	+	80335719,80362753,80583092,80869992,80944809,80963516	80335879,80362884,80583183,80870135,80944939,80963756	0.858407
ovary_female_adult_51_years	chr8	32927976	32927977	32927976	+	RAMPAGE_only	9	9	12	0.713634	3.084963	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	1.000000
ovary_female_adult_51_years	chr12	15001766	15001839	15001825	+	High_confidence	16	16	106	6.303764	5.710238	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.726415
ovary_female_adult_51_years	chr13	100438674	100438677	100438676	+	High_confidence	36	42	57	3.389760	5.329589	chr13	100438447	100438841	LTR|ERVL|LTR47B2	+	chr13	100438564	100530423	STRG.111124.9	+	100438564,100449251,100515426,100527674,100530097	100438720,100449305,100515567,100527752,100530423	0.789474
ovary_female_adult_51_years	chr4	3929727	3929738	3929727	-	High_confidence	4	7	14	0.832573	3.238901	chr4	3927854	3930775	LTR|ERV1|HERVH-int	+	chr4	3920795	3929716	STRG.37700.1	-	3920795,3924070,3929541	3921782,3924267,3929716	0.785714
ovary_female_adult_51_years	chr5	32403108	32403167	32403148	-	RAMPAGE_only	5	8	37	2.200370	4.571861	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354628	32444496	STRG.47841.3	-	32354628,32363947,32364163,32379114,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228	32355939,32364045,32364275,32379210,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444496	0.918919
ovary_female_adult_51_years	chr9	76956680	76956681	76956680	+	High_confidence	554	569	733	43.591124	7.715091	chr9	76956332	76956747	LTR|ERV1|LTR2B	+	chr9	76956665	76990696	STRG.84151.3	+	76956665,76988172	76957448,76990696	0.785812
ovary_female_adult_51_years	chr1	150457313	150457335	150457334	+	RAMPAGE_only	3	3	8	0.475756	2.807355	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150446086	150473556	STRG.7362.6	+	150446086,150457287,150460059,150464422,150470560	150446401,150457570,150460317,150464727,150473556	0.750000
ovary_female_adult_51_years	chr14	34536109	34536122	34536109	-	High_confidence	6	7	13	0.773103	3.418296	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.615385
ovary_female_adult_51_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	23	23	23	1.367798	4.349649	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103099925	103179034	STRG.92303.6	-	103099925,103101044,103101234,103105705,103106588,103139405,103174857,103176485	103100019,103101102,103101326,103105801,103106706,103139479,103174982,103179034	0.695652
ovary_female_adult_51_years	chr12	6813568	6813576	6813575	+	High_confidence	8	8	17	1.010981	3.690117	chr12	6813405	6813751	LINE|L1|L1ME4b	-	chr12	6813563	6820754	STRG.101884.2	+	6813563,6814141,6814758,6816055,6817129,6818420,6818846,6819298	6813602,6814300,6814992,6816403,6817330,6818542,6818914,6820754	0.882353
ovary_female_adult_51_years	chr8	30731643	30731665	30731664	+	RAMPAGE_only	6	6	15	0.892042	3.456565	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30728971	30763322	STRG.75640.2	+	30728971,30731528,30744327,30751395,30753034,30754664,30756764,30760887,30763272	30729345,30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763322	0.933333
ovary_female_adult_51_years	chr16	65053813	65053883	65053820	-	RAMPAGE_only	5	5	38	2.259840	4.584604	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.736842
ovary_female_adult_51_years	chr7	7484237	7484253	7484252	-	RAMPAGE_only	7	7	15	0.892042	3.773557	chr7	7483997	7484719	LINE|L1|L1MEd	+	chr7	7417631	7520073	COL28A1|ENST00000444268.1	-	7417631,7419884,7432472,7432631,7436394,7437393,7440789,7443584,7444417,7452318,7453439,7456043,7474600,7477111,7489388,7490577,7506013,7507116,7511090,7511651,7515813,7517795,7520061	7417927,7419953,7432541,7432700,7436463,7437462,7440861,7443653,7444489,7452387,7453508,7456112,7474669,7477180,7489457,7490646,7506067,7507161,7511135,7511844,7515840,7517837,7520073	0.933333
ovary_female_adult_51_years	chr7	23727811	23727819	23727818	+	High_confidence	5	5	10	0.594695	3.169925	chr7	23727553	23727859	SINE|Alu|AluSx1	-	chr7	23728119	23832494	STRG.66710.2	+	23728119,23729090,23735537,23736903,23752716,23754314,23762800,23768994,23769639,23771004,23781418,23783582,23785477,23786507,23786837,23787979,23790823,23815143,23832135	23728205,23729249,23735896,23737078,23752832,23754474,23762923,23769174,23769756,23772278,23781520,23783663,23785603,23786633,23786924,23788129,23790946,23815212,23832494	0.700000
ovary_female_adult_51_years	chr1	147172962	147172976	147172975	+	High_confidence	3	5	11	0.654164	3.121928	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.909091
ovary_female_adult_51_years	chr4	68906942	68906943	68906942	-	High_confidence	13	13	15	0.892042	3.773557	chr4	68905745	68907106	LTR|ERV1|HERV3-int	-	chr4	68901007	68906983	AC021146.12|ENST00000608365.1	-	68901007,68906874	68901375,68906983	0.533333
ovary_female_adult_51_years	chr10	102449836	102449866	102449844	+	High_confidence	5	5	20	1.189389	3.646439	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449852	102456293	RPARP-AS1|ENST00000492465.2	+	102449852,102450186,102451398,102452089,102455336	102450022,102450360,102451555,102452187,102456293	0.950000
ovary_female_adult_51_years	chr17	76586949	76586985	76586949	-	High_confidence	3	3	16	0.951512	3.906891	chr17	76586602	76586930	DNA|hAT-Charlie|MER1B	-	chr17	76565378	76586128	ST6GALNAC2|ENST00000225276.9	-	76565378,76567452,76568712,76570564,76572636,76573194,76574364,76578755,76585683	76566271,76567552,76568796,76570668,76572775,76573363,76574539,76578816,76586128	0.687500
ovary_female_adult_51_years	chr22	48693176	48693220	48693219	+	High_confidence	4	4	14	0.832573	3.546594	chr22	48693219	48693333	LINE|L1|L1ME4c	+	chr22	48693246	48750408	FAM19A5|ENST00000406880.1	+	48693246,48707716,48749838	48693381,48707844,48750408	0.500000
ovary_female_adult_51_years	chr2	205347918	205347925	205347924	+	High_confidence	5	5	10	0.594695	2.725481	chr2	205347863	205348272	LTR|ERVL|ERV3-16A3_LTR	-	chr2	205347808	205440471	PARD3B|ENST00000494482.1	+	205347808,205401012,205440369	205348171,205401123,205440471	0.800000
ovary_female_adult_51_years	chr11	114405721	114405750	114405749	+	RAMPAGE_only	4	4	11	0.654164	2.721928	chr11	114405747	114405830	LINE|CR1|X6B_LINE	-	chr11	114400673	114408123	RBM7|ENST00000545678.1	+	114400673,114405705,114407444	114400767,114405799,114408123	0.909091
ovary_female_adult_51_years	chr6	110330320	110330330	110330320	-	RAMPAGE_only	3	3	8	0.475756	2.521641	chr6	110329832	110331376	LINE|L1|L1MD2	+	chr6	110245927	110358272	METTL24|ENST00000338882.4	-	110245927,110298921,110315341,110322773,110357954	110246260,110299150,110315481,110322872,110358272	0.500000
ovary_female_adult_51_years	chr8	38825311	38825361	38825360	+	RAMPAGE_only	8	8	44	2.616657	4.843081	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.931818
ovary_female_adult_51_years	chrX	44951147	44951148	44951147	+	RAMPAGE_only	36	39	41	2.438248	4.875146	chrX	44950752	44951268	LTR|ERV1|LTR10D	+	chrX	44873551	45111411	KDM6A|ENST00000621147.4	+	44873551,44873923,44961283,44974665,45010960,45020609,45034930,45037654,45053828,45059005,45059246,45061323,45063421,45069578,45076696,45078399,45107456,45110078,45111381	44873712,44873987,44961392,44974715,45011019,45020730,45034985,45037689,45053955,45059104,45059466,45061419,45063817,45070357,45076826,45078493,45107536,45110249,45111411	0.731707
ovary_female_adult_51_years	chr8	119875399	119875415	119875413	+	RAMPAGE_only	3	4	8	0.475756	2.521641	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.500000
ovary_female_adult_51_years	chr3	31533421	31533476	31533421	+	High_confidence	5	5	20	1.189389	3.108376	chr3	31533377	31533564	LINE|L1|L1M4b	-	chr3	31533624	31617005	STT3B|ENST00000462235.5	+	31533624,31576395,31579808,31596797,31600359,31615104,31616928	31533686,31576504,31580096,31596863,31600459,31615203,31617005	0.950000
ovary_female_adult_51_years	chr1	12084220	12084237	12084236	+	High_confidence	14	21	32	1.903023	4.415061	chr1	12084124	12084342	LINE|L2|L2	-	chr1	12084192	12144207	STRG.627.2	+	12084192,12097100,12104378,12109565,12110040,12111897,12115576,12123283,12123714,12125950,12126182,12135587,12138231,12142286	12084551,12097217,12104531,12109656,12110204,12112014,12115729,12123377,12123827,12126052,12126236,12135613,12138436,12144207	0.843750
ovary_female_adult_51_years	chr3	69237176	69237188	69237185	-	RAMPAGE_only	21	21	72	4.281802	5.588607	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.527778
ovary_female_adult_51_years	chr7	7566514	7566534	7566514	-	High_confidence	17	19	50	2.973474	5.251629	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.560000
ovary_female_adult_51_years	chr9	95831779	95831805	95831804	-	RAMPAGE_only	6	6	16	0.951512	3.506891	chr9	95831563	95831844	LTR|ERVL|LTR16D	+	chr9	95806087	95875977	LINC00476|NR_023390.1	-	95806087,95850226,95875864	95813922,95850292,95875977	0.625000
ovary_female_adult_51_years	chr3	9192492	9192523	9192492	+	High_confidence	71	72	108	6.422703	6.075252	chr3	9192123	9192754	LTR|ERVL|MER77	+	chr3	9192492	9194453	LOC101927416|NR_121663.1	+	9192492,9193428,9193725	9192995,9193490,9194453	0.953704
ovary_female_adult_51_years	chr9	117643095	117643156	117643109	+	RAMPAGE_only	6	9	32	1.903023	4.373557	chr9	117641898	117643291	LTR|ERV1|LTR12C	-	chr9	117648605	117657027	LOC101928797|NR_109806.1	+	117648605,117650851,117652287,117653630,117655607,117656395	117648695,117650977,117652447,117653741,117655787,117657027	0.562500
ovary_female_adult_51_years	chr14	53217654	53217676	53217654	+	High_confidence	3	4	8	0.475756	2.500000	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217711	53687258	AL365295.1|ENST00000456100.5	+	53217711,53318030,53369451,53687198	53218055,53318138,53369501,53687258	0.625000
ovary_female_adult_51_years	chr14	23692994	23693014	23693013	+	High_confidence	25	25	46	2.735596	4.346628	chr14	23692551	23693117	LTR|ERV1|LTR61	+	chr14	23692812	23698934	STRG.112192.1	+	23692812,23693105,23696856	23692972,23693346,23698934	0.956522
ovary_female_adult_51_years	chr14	106193403	106193430	106193410	+	High_confidence	112	114	544	32.351393	7.194815	chr14	106192967	106193706	LTR|ERVL-MaLR|MSTB-int	-	chr14	106193250	106210141	STRG.116376.5	+	106193250,106196759,106199016,106205075,106206077	106193913,106197002,106202463,106205151,106210141	0.895221
ovary_female_adult_51_years	chr17	41871799	41871820	41871819	-	RAMPAGE_only	4	4	9	0.535225	2.750000	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.777778
ovary_female_adult_51_years	chr1	54900153	54900156	54900155	+	High_confidence	4	7	8	0.475756	2.807355	chr1	54900052	54900200	LTR|ERV1|HERVH-int	-	chr1	54900132	54992293	STRG.2911.1	+	54900132,54908769,54986096,54991835	54900250,54908858,54986446,54992293	0.750000
ovary_female_adult_51_years	chrX	100703141	100703142	100703141	-	RAMPAGE_only	5	6	7	0.416286	2.584963	chrX	100703070	100703372	SINE|Alu|AluJb	+	chrX	100674490	100731510	SYTL4|ENST00000372989.5	-	100674490,100678390,100679312,100681226,100685989,100686678,100687066,100688350,100689855,100690074,100690562,100691107,100700896,100701219,100701457,100701927,100703092,100704810,100731417	100676176,100678599,100679412,100681335,100686151,100686781,100687245,100688443,100689959,100690165,100690638,100691209,100700999,100701329,100701673,100702107,100703185,100704886,100731510	0.857143
ovary_female_adult_51_years	chr14	24266032	24266036	24266033	+	RAMPAGE_only	5	7	15	0.892042	3.506891	chr14	24265914	24266204	DNA|hAT-Charlie|MER102c	-	chr14	24271204	24298851	STRG.112250.2	+	24271204,24298613	24271310,24298851	0.533333
ovary_female_adult_51_years	chr5	139526439	139526552	139526518	+	RAMPAGE_only	43	43	166	9.871932	6.254963	chr5	139526346	139526725	LTR|ERV1|Harlequin-int	+	chr5	139561165	139628434	UBE2D2|NM_181838.1	+	139561165,139562243,139600371,139614585,139614696,139614860,139623367,139626755	139561815,139562407,139600435,139614617,139614774,139614966,139623461,139628434	0.542169
ovary_female_adult_51_years	chr6	35566953	35566954	35566953	-	High_confidence	42	54	56	3.330290	5.180451	chr6	35566829	35567331	LTR|ERV1|LTR10B	-	chr6	35563167	35566679	STRG.57313.1	-	35563167,35566613	35563514,35566679	0.625000
ovary_female_adult_51_years	chr1	153119468	153119469	153119468	-	High_confidence	2013	2063	2789	165.860360	5.537355	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112120	153119535	STRG.7046.1	-	153112120,153119352	153112752,153119535	0.984941
ovary_female_adult_51_years	chrX	73837450	73837494	73837450	-	RAMPAGE_only	10	10	29	1.724615	3.879894	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
ovary_female_adult_51_years	chr13	109732157	109732161	109732160	-	High_confidence	8	8	13	0.773103	3.188722	chr13	109731772	109733218	LTR|ERV1|LTR12C	-	chr13	109730959	109731936	STRG.111670.1	-	109730959	109731936	0.769231
ovary_female_adult_51_years	chr2	130428519	130428534	130428533	-	High_confidence	3	3	9	0.535225	2.750000	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046259.1	-	130416749,130419070,130425090,130425913,130427703	130418298,130419245,130425158,130426038,130428546	0.777778
ovary_female_adult_51_years	chr1	39310263	39310283	39310282	+	RAMPAGE_only	5	5	12	0.713634	3.084963	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	1.000000
ovary_female_adult_51_years	chr14	95516122	95516123	95516122	+	High_confidence	9	11	13	0.773103	2.931209	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.923077
ovary_female_adult_51_years	chr6	110330105	110330118	110330110	-	RAMPAGE_only	10	11	29	1.724615	4.513153	chr6	110329832	110331376	LINE|L1|L1MD2	+	chr6	110239415	110358207	STRG.60944.2	-	110239415,110246131,110298921,110322773,110332439,110357156	110244610,110246260,110299150,110322872,110332565,110358207	0.586207
ovary_female_adult_51_years	chr5	140633665	140633673	140633672	-	High_confidence	3	4	8	0.475756	2.807355	chr5	140633624	140633721	LINE|CR1|L3	+	chr5	140632818	140633700	CD14|ENST00000512545.1	-	140632818,140633068,140633530	140632980,140633292,140633700	0.500000
ovary_female_adult_51_years	chr9	13386132	13386133	13386132	+	RAMPAGE_only	14	14	20	1.189389	3.921928	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.900000
ovary_female_adult_51_years	chr2	73072182	73072209	73072182	-	High_confidence	4	4	19	1.129920	3.947703	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.526316
ovary_female_adult_51_years	chr6	49727741	49728208	49727869	-	RAMPAGE_only	115	130	912	54.236159	5.893925	chr6	49727378	49728029	LINE|L1|L1MD3	-	chr6	49727383	49744414	CRISP3|ENST00000263045.8	-	49727383,49731162,49733194,49733702,49735503,49736390,49737324,49744330	49728857,49731251,49733292,49733848,49735591,49736507,49737398,49744414	0.993421
ovary_female_adult_51_years	chrX	53585017	53585038	53585017	-	RAMPAGE_only	2	2	11	0.654164	3.321928	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.909091
ovary_female_adult_51_years	chr6	28335749	28335750	28335749	+	High_confidence	28	29	32	1.903023	4.625000	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28335773	28336644	STRG.56467.1	+	28335773	28336644	0.843750
ovary_female_adult_51_years	chrX	5726324	5726325	5726324	-	High_confidence	12	12	13	0.773103	3.084963	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.846154
ovary_female_adult_51_years	chr15	80059918	80059933	80059918	+	High_confidence	108	121	236	14.034796	5.694936	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.940678
ovary_female_adult_51_years	chr8	30728966	30728967	30728966	+	High_confidence	12	12	16	0.951512	3.640224	chr8	30728580	30729079	LTR|ERV1|LTR2C	+	chr8	30728971	30763322	STRG.75640.2	+	30728971,30731528,30744327,30751395,30753034,30754664,30756764,30760887,30763272	30729345,30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763322	0.812500
ovary_female_adult_51_years	chr1	153967486	153967508	153967486	+	High_confidence	10	10	31	1.843554	3.818090	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153974131	STRG.7532.3	+	153967533,153968521,153968929,153969333,153972743,153972971,153973194,153973379,153973619,153973871	153967884,153968699,153969176,153969455,153972836,153973078,153973263,153973464,153973716,153974131	0.903226
ovary_female_adult_51_years	chr20	46771275	46771293	46771275	-	High_confidence	2	2	10	0.594695	2.846439	chr20	46771216	46771439	LINE|L2|L2b	+	chr20	46765412	46771361	STRG.139386.1	-	46765412,46771222	46765824,46771361	0.500000
ovary_female_adult_51_years	chr19	3047800	3047815	3047811	-	High_confidence	7	7	15	0.892042	3.235926	chr19	3047758	3047946	LINE|L2|L2a	+	chr19	2997637	3047635	TLE2|NM_001144761.1	-	2997637,3002352,3005436,3005720,3006419,3008868,3009541,3011021,3013668,3014569,3015652,3017839,3019282,3019698,3025019,3027828,3028318,3028705,3045725,3047562	2997955,3002503,3005584,3005968,3006669,3008945,3009702,3011160,3013818,3014614,3015760,3017859,3019466,3019773,3025082,3027873,3028382,3028803,3045799,3047635	0.866667
ovary_female_adult_51_years	chr3	112420906	112420993	112420992	-	High_confidence	15	15	46	2.735596	4.632014	chr3	112419874	112422911	LTR|ERV1|HERVH-int	-	chr3	112418525	112421072	STRG.31450.2	-	112418525,112420743	112419009,112421072	0.804348
ovary_female_adult_51_years	chr12	117189576	117189577	117189576	-	High_confidence	5	5	7	0.416286	2.584963	chr12	117189441	117189591	SINE|MIR|MIRb	+	chr12	117145048	117190286	FBXO21|ENST00000550180.5	-	117145048,117155790,117157872,117165484,117172470,117174204,117174650,117177519,117186476,117189226,117190217	117146277,117155948,117158063,117165617,117172607,117174341,117174797,117177641,117186571,117189362,117190286	0.857143
ovary_female_adult_51_years	chr2	55618850	55618904	55618850	-	High_confidence	5	6	16	0.951512	3.625000	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.937500
ovary_female_adult_51_years	chr6	31185992	31186003	31185992	-	High_confidence	2	3	6	0.356817	2.584963	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31164600	31186404	STRG.57022.4	-	31164600,31165127,31165570,31165926,31177638	31164867,31165286,31165701,31175955,31186404	1.000000
ovary_female_adult_51_years	chr11	64242523	64242547	64242546	+	High_confidence	4	4	14	0.832573	3.700440	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.928571
ovary_female_adult_51_years	chr4	44867437	44867456	44867455	+	High_confidence	45	50	91	5.411722	5.301052	chr4	44864689	44868696	LINE|L1|L1PA16	-	chr4	44867468	44985575	STRG.40238.3	+	44867468,44871805,44892966,44985249	44867501,44871902,44893082,44985575	0.868132
ovary_female_adult_51_years	chr22	24011756	24011757	24011756	+	High_confidence	9	9	9	0.535225	2.725481	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.888889
ovary_female_adult_51_years	chr13	48492655	48492684	48492655	-	High_confidence	5	5	14	0.832573	3.182006	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48488969	48492687	STRG.109902.6	-	48488969,48492439	48490251,48492687	0.928571
ovary_female_adult_51_years	chr9	73163083	73163093	73163083	+	RAMPAGE_only	2	2	7	0.416286	2.807355	chr9	73162911	73163325	LTR|ERVL-MaLR|MSTB1	-	chr9	73160284	73165544	ANXA1|ENST00000489109.1	+	73160284,73160802,73162781,73163475,73165115	73160376,73160893,73162861,73163532,73165544	0.571429
ovary_female_adult_51_years	chr1	20028514	20028557	20028515	+	High_confidence	15	23	45	2.676126	5.078639	chr1	20028464	20028814	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.555556
ovary_female_adult_51_years	chr14	91462203	91462216	91462210	-	High_confidence	4	5	14	0.832573	2.719295	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.785714
ovary_female_adult_51_years	chr1	59295909	59295947	59295946	+	High_confidence	2	2	7	0.416286	2.807355	chr1	59295878	59295975	SINE|MIR|MIR3	+	chr1	59296794	59378837	FGGY|ENST00000413489.5	+	59296794,59321535,59339957,59346246,59378748	59296907,59321750,59340069,59346398,59378837	0.714286
ovary_female_adult_51_years	chr3	9192462	9192463	9192462	+	High_confidence	7	7	8	0.475756	2.807355	chr3	9192123	9192754	LTR|ERVL|MER77	+	chr3	9192492	9194453	LOC101927416|NR_121663.1	+	9192492,9193428,9193725	9192995,9193490,9194453	0.875000
ovary_female_adult_51_years	chr21	32387366	32387404	32387366	-	RAMPAGE_only	2	2	13	0.773103	2.873141	chr21	32387325	32387441	SINE|Alu|AluSc	+	chr21	32311018	32393003	URB1|NM_014825.2	-	32311018,32316465,32317675,32319216,32320530,32321800,32322477,32324490,32325228,32333316,32334162,32337093,32337403,32338706,32341465,32344569,32345373,32346955,32349303,32350703,32352709,32353932,32354858,32355448,32357536,32359795,32361006,32361891,32363155,32366617,32368402,32372506,32373646,32375397,32378444,32383421,32384312,32385544,32392768	32315099,32317065,32317917,32319414,32320640,32321944,32322584,32324602,32325389,32333419,32334334,32337157,32337514,32338900,32341524,32344756,32345575,32347811,32349483,32350922,32352906,32354103,32354997,32355565,32357656,32359908,32361123,32362021,32363329,32366755,32368598,32372631,32373772,32375483,32378541,32383554,32384464,32385684,32393003	1.000000
ovary_female_adult_51_years	chr1	230605065	230605165	230605123	-	High_confidence	15	16	55	3.270821	5.180451	chr1	230604919	230605422	LTR|ERV1|HERVH-int	+	chr1	230556143	230604949	STRG.11519.3	-	230556143,230604663	230556361,230604949	0.945455
ovary_female_adult_51_years	chr4	79492585	79492616	79492585	+	High_confidence	3	3	16	0.951512	3.456565	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.875000
ovary_female_adult_51_years	chr10	6618588	6618646	6618620	+	High_confidence	9	9	37	2.200370	4.425141	chr10	6618236	6618751	LTR|ERVL|MER21A	+	chr10	6618715	6639781	LOC101928150|NR_120634.1	+	6618715,6620917,6621709,6625316,6626929,6638312	6618776,6621173,6621862,6625399,6628377,6639781	0.918919
ovary_female_adult_51_years	chr1	51403428	51403448	51403428	-	RAMPAGE_only	5	7	14	0.832573	3.026987	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.785714
ovary_female_adult_51_years	chr15	33194708	33194748	33194708	-	High_confidence	12	12	41	2.438248	4.853056	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.707317
ovary_female_adult_51_years	chr1	46332178	46332179	46332178	-	High_confidence	68	68	93	5.530661	5.282871	chr1	46332068	46332557	LTR|ERV1|LTR2B	-	chr1	46331444	46332208	STRG.2582.8	-	46331444	46332208	0.763441
ovary_female_adult_51_years	chr11	77175226	77175303	77175226	+	High_confidence	5	5	21	1.248859	4.037401	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175283	77198609	STRG.97821.1	+	77175283,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353,77197480,77198494	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194524,77197598,77198609	0.904762
ovary_female_adult_51_years	chr10	133369993	133370021	133370020	-	RAMPAGE_only	3	4	9	0.535225	2.947703	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
ovary_female_adult_51_years	chr5	127707124	127707141	127707135	+	High_confidence	4	4	13	0.773103	3.418296	chr5	127706615	127707336	LINE|L2|L2a	-	chr5	127707707	127941612	STRG.51835.1	+	127707707,127754267,127797102,127798105,127875537,127941181	127707760,127754375,127797234,127798162,127875661,127941612	0.692308
ovary_female_adult_51_years	chr14	81170392	81170420	81170413	-	High_confidence	34	48	146	8.682543	5.515894	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.958904
ovary_female_adult_51_years	chr19	20660790	20660835	20660834	-	High_confidence	3	3	6	0.356817	2.584963	chr19	20660724	20660878	LTR|ERV1|LTR10B2	-	chr19	20643396	20661507	STRG.134685.20	-	20643396,20645683,20646278,20660426	20645448,20645779,20646405,20661507	1.000000
ovary_female_adult_51_years	chr12	110440313	110440374	110440313	-	RAMPAGE_only	4	7	22	1.308328	3.784184	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.909091
ovary_female_adult_51_years	chr11	71745875	71745915	71745875	+	High_confidence	17	17	88	5.233314	5.702257	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.886364
ovary_female_adult_51_years	chr9	108885871	108885872	108885871	-	RAMPAGE_only	12	12	14	0.832573	3.378783	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108867516	108893083	ELP1|ENST00000495759.5	-	108867516,108874894,108875632,108877994,108878622,108879445,108880051,108881704,108882124,108889331,108891202,108892985	108869182,108874970,108875735,108878149,108878750,108879557,108880165,108881765,108882187,108889393,108891404,108893083	1.000000
ovary_female_adult_51_years	chr7	53811930	53811942	53811930	-	High_confidence	6	6	22	1.308328	4.321928	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.681818
ovary_female_adult_51_years	chrX	147937573	147937584	147937583	+	RAMPAGE_only	3	3	9	0.535225	2.750000	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.666667
ovary_female_adult_51_years	chr1	174874418	174874454	174874418	+	High_confidence	19	20	136	8.087848	5.848567	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.779412
ovary_female_adult_51_years	chr11	77571060	77571075	77571060	+	High_confidence	4	4	8	0.475756	2.500000	chr11	77570921	77571455	LTR|ERV1|LTR61	+	chr11	77571082	77576145	STRG.97830.1	+	77571082,77571514,77574210	77571310,77571685,77576145	1.000000
ovary_female_adult_51_years	chr6	132687374	132687375	132687374	-	High_confidence	5	5	8	0.475756	2.807355	chr6	132687157	132687546	LINE|L1|HAL1	+	chr6	132686718	132687356	STRG.62531.1	-	132686718	132687356	0.625000
ovary_female_adult_51_years	chrX	120137078	120137088	120137078	-	RAMPAGE_only	4	7	15	0.892042	3.664498	chrX	120136863	120137319	LTR|ERV1|LTR36	-	chrX	120109076	120117626	STRG.149159.1	-	120109076,120112868,120115464,120117569	120109302,120112914,120115906,120117626	0.666667
ovary_female_adult_51_years	chr7	152460665	152460683	152460665	-	RAMPAGE_only	13	13	25	1.486737	3.969002	chr7	152460557	152460804	LINE|L2|L2a	-	chr7	152135532	152436637	STRG.73506.5	-	152135532,152138795,152139185,152139674,152144712,152145164,152146598,152148032,152150899,152151441,152152704,152154009,152154266,152155909,152157760,152158862,152162116,152167145,152169185,152171263,152174130,152176190,152179833,152180710,152182973,152185557,152187261,152187714,152194008,152194228,152194439,152195906,152199278,152202933,152205105,152207299,152220522,152222000,152222572,152224014,152224434,152229922,152230219,152235816,152249875,152250852,152251938,152252545,152263015,152265037,152273704,152309965,152311797,152315137,152330600,152358586,152435625,152436511	152136924,152138904,152139259,152139791,152144881,152145295,152146735,152149152,152151007,152151581,152152954,152154146,152154445,152156346,152157922,152159072,152163826,152167378,152169249,152171342,152174242,152178010,152180126,152182594,152183156,152185631,152187476,152187847,152194128,152194261,152194568,152196011,152199459,152203064,152205225,152207428,152220735,152222066,152222682,152224179,152224616,152230027,152230321,152248620,152249953,152250966,152252090,152252715,152263130,152265209,152273867,152310075,152311946,152315338,152330739,152358675,152435787,152436637	0.880000
ovary_female_adult_51_years	chr2	119525355	119525370	119525369	-	High_confidence	6	8	16	0.951512	3.373557	chr2	119525359	119525457	SINE|MIR|MIRb	-	chr2	119461982	119525301	SCTR|ENST00000627145.1	-	119461982,119464122,119465788,119473452,119478810,119494427,119495473,119525177	119462000,119464255,119465886,119473556,119478918,119494548,119495537,119525301	0.687500
ovary_female_adult_51_years	chr20	45833293	45833310	45833307	-	High_confidence	14	21	52	3.092413	4.241319	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833438	STRG.139364.1	-	45823213,45823990,45824291,45824494,45824782,45833250	45823379,45824127,45824406,45824638,45824834,45833438	1.000000
ovary_female_adult_51_years	chr16	46763230	46763281	46763230	-	High_confidence	4	5	17	1.010981	3.625000	chr16	46763076	46763184	SINE|MIR|MIRb	-	chr16	46702281	46763246	MYLK3|NM_001308301.1	-	46702281,46709538,46710636,46712647,46721122,46727235,46729023,46729593,46730592,46732207,46740056,46763039	46707763,46709671,46710789,46712776,46721193,46727377,46729133,46729687,46730698,46732668,46740147,46763246	0.705882
ovary_female_adult_51_years	chr14	53217621	53217622	53217621	+	High_confidence	14	14	17	1.010981	2.939829	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217711	53687258	AL365295.1|ENST00000456100.5	+	53217711,53318030,53369451,53687198	53218055,53318138,53369501,53687258	0.764706
ovary_female_adult_51_years	chr1	155343321	155343324	155343321	-	RAMPAGE_only	6	6	10	0.594695	3.169925	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.900000
ovary_female_adult_51_years	chr11	111097287	111097320	111097287	-	High_confidence	3	3	14	0.832573	3.093069	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.928571
ovary_female_adult_51_years	chr3	39502910	39502933	39502916	-	High_confidence	9	9	24	1.427267	4.055958	chr3	39502740	39503055	LTR|ERVL|LTR33A	+	chr3	39501763	39502921	STRG.27894.1	-	39501763,39502452	39502260,39502921	0.833333
ovary_female_adult_51_years	chr5	147382883	147382903	147382883	+	High_confidence	4	4	19	1.129920	3.531631	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.789474
ovary_female_adult_51_years	chr1	244652030	244652045	244652030	-	High_confidence	4	4	12	0.713634	3.584963	chr1	244651808	244652213	LINE|L2|L2a	+	chr1	244615877	244652034	STRG.12282.1	-	244615877,244651436	244615948,244652034	0.750000
ovary_female_adult_51_years	chr4	141332616	141332617	141332616	-	High_confidence	212	214	216	12.845406	4.672125	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.958333
ovary_female_adult_51_years	chr1	89272843	89272883	89272882	-	High_confidence	6	6	42	2.497718	4.421832	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.928571
ovary_female_adult_51_years	chr13	52570168	52570181	52570180	+	High_confidence	3	3	7	0.416286	2.584963	chr13	52569964	52570306	LINE|L1|L1PA16	-	chr13	52570152	52583492	AL137058.1|ENST00000649839.1	+	52570152,52571231,52579343,52583095	52570466,52571293,52579435,52583492	0.714286
ovary_female_adult_51_years	chr22	23538184	23538209	23538208	+	RAMPAGE_only	8	8	16	0.951512	3.327820	chr22	23537739	23538729	LTR|ERVK|LTR5B	+	chr22	23536880	23539480	PCAT14|ENST00000629869.1	+	23536880,23538760	23537136,23539480	0.937500
ovary_female_adult_51_years	chr18	39800293	39800314	39800313	-	High_confidence	17	21	58	3.449229	5.503857	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.655172
ovary_female_adult_51_years	chr2	231401094	231401095	231401094	+	RAMPAGE_only	26	26	26	1.546206	4.392747	chr2	231400711	231401206	LTR|ERV1|LTR2C	+	chr2	231395542	231408801	STRG.24577.1	+	231395542,231397730,231406023	231395814,231404514,231408801	1.000000
ovary_female_adult_51_years	chr13	52236325	52236338	52236325	-	RAMPAGE_only	22	23	41	2.438248	4.543943	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.878049
ovary_female_adult_51_years	chr9	20658312	20658349	20658348	+	High_confidence	29	45	100	5.946947	5.202749	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.840000
ovary_female_adult_51_years	chr14	67886734	67886756	67886734	+	RAMPAGE_only	5	6	10	0.594695	3.169925	chr14	67886207	67886761	LTR|ERVL-MaLR|MLT1F2	-	chr14	67885732	67887550	RAD51B|ENST00000474051.1	+	67885732,67887020	67885988,67887550	0.500000
ovary_female_adult_51_years	chr13	29647553	29647557	29647553	+	High_confidence	3	3	8	0.475756	2.521641	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647529	29655478	STRG.108600.1	+	29647529,29655069	29647724,29655478	0.875000
ovary_female_adult_51_years	chr1	219433049	219433062	219433049	-	RAMPAGE_only	6	6	14	0.832573	3.238901	chr1	219432838	219433267	LTR|ERVL|MER70B	-	chr1	219409522	219459194	AL513283.1|ENST00000441790.2	-	219409522,219411717,219459074	219410267,219411939,219459194	0.571429
ovary_female_adult_51_years	chr7	100082573	100082580	100082573	-	High_confidence	5	5	19	1.129920	3.308271	chr7	100082301	100082600	SINE|Alu|AluSx1	+	chr7	100069970	100082548	ZNF3|NM_001278287.1	-	100069970,100075134,100075541,100077302,100079535,100082300	100072212,100075261,100075630,100077433,100079572,100082548	0.789474
ovary_female_adult_51_years	chr19	571699	571755	571754	-	High_confidence	5	8	24	1.427267	3.882045	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.875000
ovary_female_adult_51_years	chr11	65431680	65431762	65431761	+	RAMPAGE_only	9	10	39	2.319309	4.594456	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.948718
ovary_female_adult_51_years	chr6	158631140	158631154	158631140	+	RAMPAGE_only	3	3	12	0.713634	3.418296	chr6	158631108	158631267	SINE|MIR|MIRc	-	chr6	158560116	158635435	STRG.64199.1	+	158560116,158573419,158580939,158583953,158585303,158589671,158605266,158607243,158608332,158608658,158623549,158625103,158625702,158628407,158629729,158631322,158631809	158560232,158573523,158580995,158584044,158585425,158589782,158605347,158607343,158608463,158608750,158623607,158625206,158625754,158628490,158629819,158631389,158635435	0.833333
ovary_female_adult_51_years	chr10	110885054	110885073	110885060	+	High_confidence	3	4	9	0.535225	3.169925	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110884770	110894179	PDCD4|ENST00000481353.5	+	110884770,110887664,110889532,110890555,110894090	110885366,110887886,110889630,110890670,110894179	0.888889
ovary_female_adult_51_years	chr15	57451517	57451569	57451564	+	RAMPAGE_only	4	5	17	1.010981	3.734522	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
ovary_female_adult_51_years	chr8	53523936	53523968	53523963	-	High_confidence	7	8	29	1.724615	4.720050	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.896552
ovary_female_adult_51_years	chr2	217900226	217900241	217900232	-	RAMPAGE_only	2	2	7	0.416286	2.584963	chr2	217900072	217900279	SINE|MIR|MIRb	+	chr2	217859228	217903813	TNS1|ENST00000310858.10	-	217859228,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217903602	217859701,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217903813	0.857143
ovary_female_adult_51_years	chr1	53427934	53427994	53427993	-	RAMPAGE_only	19	19	75	4.460210	5.761891	chr1	53427830	53428332	LTR|ERV1|HERVH-int	+	chr1	53413162	53417666	SLC25A3P1|ENST00000566461.1	-	53413162,53415400,53417527	53413268,53415524,53417666	0.613333
ovary_female_adult_51_years	chr6	31186084	31186118	31186117	-	High_confidence	291	305	1074	63.870214	7.359440	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31164600	31186404	STRG.57022.4	-	31164600,31165127,31165570,31165926,31177638	31164867,31165286,31165701,31175955,31186404	0.924581
ovary_female_adult_51_years	chr22	37849317	37849333	37849317	-	High_confidence	35	35	83	4.935966	5.116660	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	1.000000
ovary_female_adult_51_years	chr6	85972311	85972352	85972351	+	RAMPAGE_only	11	17	31	1.843554	4.091135	chr6	85972332	85972650	LTR|ERV1|LTR12F	-	chr6	85949949	85998645	STRG.60091.1	+	85949949,85993379,85998163	85950092,85993560,85998645	0.645161
ovary_female_adult_51_years	chr4	75127251	75127264	75127251	-	RAMPAGE_only	3	4	13	0.773103	3.418296	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.769231
ovary_female_adult_51_years	chr11	57568212	57568213	57568212	-	High_confidence	6	6	8	0.475756	2.521641	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	0.875000
ovary_female_adult_51_years	chr3	31533540	31533557	31533556	+	High_confidence	4	5	10	0.594695	2.947703	chr3	31533377	31533564	LINE|L1|L1M4b	-	chr3	31533624	31617005	STT3B|ENST00000462235.5	+	31533624,31576395,31579808,31596797,31600359,31615104,31616928	31533686,31576504,31580096,31596863,31600459,31615203,31617005	0.900000
ovary_female_adult_51_years	chr20	8600707	8600749	8600707	+	High_confidence	5	5	18	1.070451	3.683542	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.666667
ovary_female_adult_51_years	chr10	27983009	27983078	27983009	-	High_confidence	46	56	122	7.255276	5.798146	chr10	27982876	27983540	LTR|ERVL|LTR50	+	chr10	27812163	27983106	ARMC4|NM_001312689.1	-	27812163,27860624,27862433,27907662,27935009,27936725,27939896,27940562,27944221,27944815,27961567,27968922,27971107,27981465,27982928	27812625,27860846,27862622,27907777,27935252,27936880,27940007,27940805,27944431,27944962,27961715,27969018,27971313,27981582,27983106	0.950820
ovary_female_adult_51_years	chr4	119217555	119217570	119217555	+	RAMPAGE_only	4	4	12	0.713634	3.251629	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212740	119239341	USP53|ENST00000507597.5	+	119212740,119217549,119235289,119239217	119212873,119217673,119235411,119239341	0.583333
ovary_female_adult_51_years	chr17	2975621	2975682	2975681	+	High_confidence	10	11	76	4.519680	5.489806	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975530	3008090	STRG.125721.1	+	2975530,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010	2975775,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008090	0.763158
ovary_female_adult_51_years	chr5	74765425	74765434	74765426	+	RAMPAGE_only	11	24	43	2.557187	4.945772	chr5	74765248	74765602	LINE|L2|L2a	-	chr5	74766990	74776912	NSA2|NM_014886.4	+	74766990,74768930,74769213,74770630,74773867,74776603	74767363,74769118,74769364,74770810,74774060,74776912	0.953488
ovary_female_adult_51_years	chr11	64773400	64773437	64773434	-	RAMPAGE_only	2	2	8	0.475756	2.807355	chr11	64773369	64773442	LINE|RTE-BovB|MamRTE1	-	chr11	64768170	64778469	STRG.97161.7	-	64768170,64769021,64769222,64769425,64769963,64770255,64776497,64778361	64768286,64769129,64769338,64769609,64770053,64773505,64776626,64778469	0.875000
ovary_female_adult_51_years	chr2	227164620	227164621	227164620	+	High_confidence	6	6	6	0.356817	2.584963	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.666667
ovary_female_adult_51_years	chr11	102397743	102397770	102397743	-	RAMPAGE_only	10	13	24	1.427267	4.095795	chr11	102397661	102397799	DNA|hAT-Charlie|Charlie16a	-	chr11	102396331	102452839	TMEM123|ENST00000361236.7	-	102396331,102401538,102401915,102452523	102398891,102401692,102402206,102452839	0.916667
ovary_female_adult_51_years	chr15	44712756	44712785	44712756	+	High_confidence	5	7	15	0.892042	3.182006	chr15	44712716	44713018	SINE|Alu|AluJr	+	chr15	44712776	44715179	B2M|ENST00000632133.1	+	44712776	44715179	0.800000
ovary_female_adult_51_years	chr2	88784860	88784870	88784860	+	RAMPAGE_only	1	1	7	0.416286	2.584963	chr2	88784858	88784980	DNA|hAT-Charlie|MER5A1	-	chr2	88782711	88805403	ANKRD36BP2|ENST00000575193.1	+	88782711,88782852,88784597,88784720,88786469,88786590,88788317,88788441,88792420,88797281,88801053,88802712,88804379,88804786,88805378	88782762,88782925,88784626,88784793,88786498,88786663,88788346,88788514,88792494,88797423,88801309,88802865,88804450,88804880,88805403	0.714286
ovary_female_adult_51_years	chr2	117623696	117623718	117623696	-	High_confidence	5	5	22	1.308328	3.725651	chr2	117623253	117629278	LINE|L1|L1PA3	+	chr2	117623186	117623796	STRG.18511.1	-	117623186	117623796	0.590909
ovary_female_adult_51_years	chr7	3482714	3482771	3482714	+	RAMPAGE_only	4	4	26	1.546206	4.008132	chr7	3482574	3482762	LINE|L1|L1MEd	+	chr7	3301586	4266408	SDK1|ENST00000389531.7	+	3301586,3619079,3639003,3641957,3821449,3950922,3951729,3958930,3962656,3967317,3969256,3971465,3974368,3987185,4010965,4012094,4017170,4049347,4051637,4067837,4076997,4079462,4110662,4113288,4114036,4127380,4129907,4132324,4145721,4149261,4158447,4161785,4174221,4178484,4205878,4208098,4210024,4220108,4221238,4233254,4237646,4241792,4245675,4265123	3301884,3619239,3639110,3642105,3821583,3951034,3951920,3959014,3962851,3967434,3969424,3971568,3974545,3987322,4011113,4012235,4017352,4049463,4051830,4067936,4077189,4079584,4110772,4113439,4114274,4127496,4130097,4132423,4145916,4149463,4158551,4161856,4174357,4178586,4205994,4208285,4210162,4220270,4221364,4233419,4237784,4241913,4245805,4266408	0.923077
ovary_female_adult_51_years	chr3	194312681	194312682	194312681	-	High_confidence	8	9	9	0.535225	2.500000	chr3	194312546	194312713	SINE|MIR|MIR	+	chr3	194296464	194312704	LINC00887|ENST00000456816.5	-	194296464,194301553,194305756,194312600	194296847,194301591,194306027,194312704	0.777778
ovary_female_adult_51_years	chr17	42403958	42404016	42403958	-	RAMPAGE_only	10	10	42	2.497718	4.129149	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	0.976190
ovary_female_adult_51_years	chr7	107580245	107580267	107580264	+	High_confidence	385	389	1956	116.322289	7.284943	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.952965
ovary_female_adult_51_years	chr15	40894554	40894578	40894554	+	High_confidence	3	3	19	1.129920	3.787144	chr15	40894565	40894630	LINE|CR1|X6A_LINE	+	chr15	40894451	40899397	VPS18|ENST00000558855.5	+	40894451,40895937,40898657,40898906,40899143	40894859,40896079,40898811,40898998,40899397	0.842105
ovary_female_adult_51_years	chr3	65018496	65018513	65018496	+	RAMPAGE_only	2	2	7	0.416286	2.584963	chr3	65018333	65018516	SINE|MIR|MIR	-	chr3	64971659	65039239	STRG.29428.5	+	64971659,65008944,65010179,65017924	64973904,65009068,65017808,65039239	0.714286
ovary_female_adult_51_years	chr4	141220426	141220427	141220426	+	High_confidence	24	24	27	1.605676	4.286790	chr4	141220377	141220506	LINE|L2|L2	-	chr4	141220886	141234697	ZNF330|NM_014487.5	+	141220886,141222365,141224486,141224606,141226766,141229570,141230165,141231438,141232524,141233714	141221108,141222491,141224506,141224677,141226846,141229697,141230270,141231485,141232642,141234697	0.777778
ovary_female_adult_51_years	chr14	77736978	77737012	77736978	-	High_confidence	2	4	10	0.594695	2.947703	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.700000
ovary_female_adult_51_years	chr3	196060539	196060580	196060579	-	High_confidence	3	3	11	0.654164	2.846439	chr3	196060516	196060826	SINE|Alu|AluY	+	chr3	196055110	196060604	TFRC|ENST00000483983.5	-	196055110,196058283,196058573,196060179	196055301,196058365,196058632,196060604	0.909091
ovary_female_adult_51_years	chr2	200862622	200862636	200862622	-	RAMPAGE_only	4	4	9	0.535225	3.000000	chr2	200862213	200862677	LTR|ERV1|LTR7B	+	chr2	200853008	200864561	CLK1|NM_001162407.1	-	200853008,200853902,200854615,200855003,200856681,200856890,200857717,200857972,200859679,200860124,200861237,200861701,200864100	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858089,200859746,200860215,200861466,200861862,200864561	0.555556
ovary_female_adult_51_years	chr21	28090097	28090126	28090125	+	High_confidence	4	4	9	0.535225	2.641604	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28089888	28102790	LINC01697|ENST00000423808.2	+	28089888,28102549	28090521,28102790	1.000000
ovary_female_adult_51_years	chrX	28207143	28207173	28207143	-	High_confidence	13	13	35	2.081432	4.476064	chrX	28206791	28212789	LINE|L1|L1PA2	+	chrX	28185922	28207227	STRG.145022.1	-	28185922,28206784	28186087,28207227	0.742857
ovary_female_adult_51_years	chr17	68413674	68413685	68413684	+	High_confidence	4	5	10	0.594695	2.725481	chr17	68408123	68414142	LINE|L1|L1PA3	-	chr17	68413729	68493670	AC007780.1|ENST00000586515.5	+	68413729,68414026,68420188,68493638	68413795,68414182,68420506,68493670	0.600000
ovary_female_adult_51_years	chr11	17282813	17282850	17282813	+	RAMPAGE_only	3	4	15	0.892042	3.773557	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.933333
ovary_female_adult_51_years	chr21	27722324	27722336	27722335	+	High_confidence	5	6	14	0.832573	3.392747	chr21	27721678	27722360	LTR|ERV1|MER50	-	chr21	27722342	27751732	STRG.140703.1	+	27722342,27751071	27722413,27751732	0.500000
ovary_female_adult_51_years	chr1	147173173	147173204	147173173	+	High_confidence	2	2	10	0.594695	3.169925	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.900000
ovary_female_adult_51_years	chr9	129488726	129488857	129488856	+	High_confidence	87	87	559	33.243435	6.034413	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.948122
ovary_female_adult_51_years	chr8	38935916	38935939	38935916	+	RAMPAGE_only	2	2	10	0.594695	2.725481	chr8	38935786	38935962	SINE|MIR|MIRc	-	chr8	38901802	38971956	PLEKHA2|ENST00000616834.1	+	38901802,38917906,38935993,38950849,38952165,38952635,38953296,38957322,38968591,38969420	38902069,38918070,38936050,38950990,38952312,38952704,38953367,38957386,38968669,38971956	0.600000
ovary_female_adult_51_years	chr6	31400605	31400620	31400617	-	High_confidence	5	7	16	0.951512	3.506891	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31399131	31400632	STRG.57047.1	-	31399131	31400632	0.812500
ovary_female_adult_51_years	chr7	11194703	11194710	11194708	+	RAMPAGE_only	9	13	20	1.189389	3.471354	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193351	11383869	STRG.66065.1	+	11193351,11244257,11248292,11379286,11383796	11193422,11244479,11248375,11379369,11383869	0.750000
ovary_female_adult_51_years	chr12	643627	643636	643627	-	High_confidence	3	7	10	0.594695	2.721928	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	565359	643636	NINJ2|ENST00000433832.2	-	565359,643510	566178,643636	0.600000
ovary_female_adult_51_years	chr4	8335299	8335314	8335313	+	High_confidence	5	5	15	0.892042	2.923231	chr4	8335198	8335390	DNA|hAT-Blackjack|MER63A	-	chr4	8335314	8336905	STRG.37940.1	+	8335314,8336498	8335445,8336905	1.000000
ovary_female_adult_51_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	10	10	10	0.594695	2.846439	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.900000
ovary_female_adult_51_years	chr21	29077448	29077487	29077486	+	High_confidence	31	32	72	4.281802	4.992860	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.694444
ovary_female_adult_51_years	chr16	27264171	27264172	27264171	-	RAMPAGE_only	9	9	10	0.594695	2.947703	chr16	27264082	27264394	SINE|Alu|AluJb	+	chr16	27233049	27268579	NSMCE1|ENST00000564342.5	-	27233049,27234187,27235177,27257434,27268399	27233147,27234265,27235299,27257581,27268579	0.600000
ovary_female_adult_51_years	chr10	6618704	6618707	6618706	+	High_confidence	8	12	17	1.010981	3.452820	chr10	6618751	6618833	DNA|hAT-Charlie|Charlie6	+	chr10	6618715	6639781	LOC101928150|NR_120634.1	+	6618715,6620917,6621709,6625316,6626929,6638312	6618776,6621173,6621862,6625399,6628377,6639781	0.941176
ovary_female_adult_51_years	chr1	196404222	196404237	196404228	-	High_confidence	11	11	24	1.427267	3.914866	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196278515	196404327	STRG.9323.3	-	196278515,196282272,196285656,196305233,196315891,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196280988,196282356,196285758,196305345,196316021,196326889,196331261,196334060,196340570,196342249,196373248,196398671,196404327	0.875000
ovary_female_adult_51_years	chr8	30729040	30729253	30729040	+	High_confidence	23	23	159	9.455646	6.182916	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30728971	30763322	STRG.75640.2	+	30728971,30731528,30744327,30751395,30753034,30754664,30756764,30760887,30763272	30729345,30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763322	0.855346
ovary_female_adult_51_years	chr20	15985875	15985876	15985875	-	High_confidence	16	17	22	1.308328	4.368523	chr20	15985767	15986246	LTR|ERV1|LTR2B	-	chr20	15892332	15985882	LOC613266|NR_130924.1	-	15892332,15985502	15894277,15985882	0.681818
ovary_female_adult_51_years	chr7	134527596	134527597	134527596	+	High_confidence	7	7	7	0.416286	2.807355	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	1.000000
ovary_female_adult_51_years	chr8	143558019	143558020	143558019	+	High_confidence	11	11	11	0.654164	3.277613	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143558018	143563027	STRG.80390.4	+	143558018,143558377,143559331,143559776,143560602,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143561104,143561423,143561828,143562131,143562350,143562521,143563027	0.909091
ovary_female_adult_51_years	chr11	7905967	7905974	7905967	-	High_confidence	3	3	9	0.535225	2.750000	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.777778
ovary_female_adult_51_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	21	21	21	1.248859	3.308751	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
ovary_female_adult_51_years	chr19	41457385	41457413	41457412	-	High_confidence	115	148	304	18.078720	6.678039	chr19	41457330	41457753	LTR|ERVL|MER21-int	-	chr19	41454194	41457425	STRG.136004.5	-	41454194,41456360,41456615	41454741,41456487,41457425	0.914474
ovary_female_adult_51_years	chr3	129439736	129439767	129439736	-	High_confidence	2	2	10	0.594695	2.947703	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129432532	129439927	STRG.33108.4	-	129432532,129433097,129434061,129436460,129437719,129439729	129432606,129433984,129434136,129437308,129437950,129439927	0.900000
ovary_female_adult_51_years	chr8	144106344	144106358	144106344	+	High_confidence	2	2	9	0.535225	3.000000	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.666667
ovary_female_adult_51_years	chr4	69051229	69051230	69051229	+	High_confidence	867	919	1099	65.356951	7.794556	chr4	69050859	69051337	LTR|ERV1|LTR2B	+	chr4	69051362	69066309	STRG.40761.7	+	69051362,69062552	69051602,69066309	0.793449
ovary_female_adult_51_years	chr11	126427406	126427407	126427406	+	High_confidence	258	269	278	16.532513	6.812934	chr11	126427257	126427974	LINE|L2|L2b	-	chr11	126427426	126428679	STRG.100963.1	+	126427426	126428679	0.978417
ovary_female_adult_51_years	chr20	18794054	18794086	18794085	+	High_confidence	27	27	86	5.114375	5.141760	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.988372
ovary_female_adult_51_years	chr9	92536601	92536704	92536601	-	High_confidence	57	61	258	15.343124	6.333291	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.903101
ovary_female_adult_51_years	chr7	6044569	6044616	6044569	-	RAMPAGE_only	2	2	14	0.832573	3.238901	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6041152	6046437	EIF2AK1|ENST00000470168.1	-	6041152,6042932,6044561,6046070	6041219,6042993,6044661,6046437	0.571429
ovary_female_adult_51_years	chr8	116648847	116648905	116648847	-	RAMPAGE_only	3	3	21	1.248859	3.747413	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.904762
ovary_female_adult_51_years	chr16	56610260	56610261	56610260	-	High_confidence	28	28	41	2.438248	4.930484	chr16	56610180	56610341	LINE|CR1|L3	-	chr16	56608993	56610333	STRG.124085.1	-	56608993	56610333	1.000000
ovary_female_adult_51_years	chr20	56367550	56367562	56367550	+	RAMPAGE_only	3	3	12	0.713634	3.027169	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	0.916667
ovary_female_adult_51_years	chr8	102929989	102930014	102930009	+	High_confidence	11	13	58	3.449229	5.258161	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.810345
ovary_female_adult_51_years	chr2	231401383	231401384	231401383	+	RAMPAGE_only	15	15	17	1.010981	3.750000	chr2	231401206	231405702	LTR|ERV1|HERVE-int	+	chr2	231395542	231408801	STRG.24577.1	+	231395542,231397730,231406023	231395814,231404514,231408801	0.941176
ovary_female_adult_51_years	chrX	103517474	103517475	103517474	-	RAMPAGE_only	35	36	49	2.914004	4.860902	chrX	103517347	103517455	SINE|MIR|MIR3	-	chrX	103437194	103437619	STRG.148414.1	-	103437194	103437619	0.510204
ovary_female_adult_51_years	chr1	20028208	20028231	20028208	+	High_confidence	3	3	13	0.773103	3.392747	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028178	20091190	PLA2G5|ENST00000486277.5	+	20028178,20046101,20054791,20059631,20066023,20068872,20084820,20086082,20089788,20090567	20028709,20046141,20054839,20059692,20066129,20069032,20084870,20086227,20089895,20091190	0.923077
ovary_female_adult_51_years	chr19	8839653	8839670	8839669	+	RAMPAGE_only	15	15	46	2.735596	4.925523	chr19	8839589	8839920	LINE|L2|L2a	-	chr19	8842592	8843340	MBD3L1|NM_145208.2	+	8842592	8843340	0.869565
ovary_female_adult_51_years	chr13	93454867	93454884	93454880	+	RAMPAGE_only	6	7	19	1.129920	3.221097	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.894737
ovary_female_adult_51_years	chr6	26956530	26956587	26956551	-	High_confidence	5	5	32	1.903023	4.351410	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.656250
ovary_female_adult_51_years	chr19	5775161	5775184	5775174	+	High_confidence	32	32	69	4.103394	5.177153	chr19	5775110	5775356	LTR|ERVK|LTR3B_	-	chr19	5775241	5778499	CATSPERD|ENST00000448307.1	+	5775241,5776160,5778375	5775289,5776315,5778499	0.550725
ovary_female_adult_51_years	chr4	28435499	28435584	28435577	+	High_confidence	8	8	46	2.735596	4.943593	chr4	28434217	28435950	LTR|ERV1|LTR49-int	+	chr4	28435448	28600275	AC097480.1|ENST00000509416.1	+	28435448,28476449,28577915,28600046	28435790,28476509,28577996,28600275	0.543478
ovary_female_adult_51_years	chr14	106203844	106203875	106203847	+	RAMPAGE_only	8	8	25	1.486737	4.023465	chr14	106197571	106206819	LTR|ERV1|HERVS71-int	-	chr14	106196035	106210141	STRG.116376.4	+	106196035,106199202,106202416,106205075,106206077	106197002,106199354,106202463,106205151,106210141	0.840000
ovary_female_adult_51_years	chr7	80369568	80369575	80369568	+	High_confidence	2	2	6	0.356817	2.584963	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.666667
ovary_female_adult_51_years	chr10	84172021	84172051	84172050	-	High_confidence	6	6	18	1.070451	3.461320	chr10	84171986	84172465	LTR|ERV1|LTR2B	-	chr10	84167227	84172076	HOST2|NR_134505.1	-	84167227,84171721	84168729,84172076	0.611111
ovary_female_adult_51_years	chr19	20750334	20750371	20750334	-	RAMPAGE_only	8	8	43	2.557187	4.784143	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746922	20755250	AC010329.1|ENST00000593903.1	-	20746922	20755250	0.953488
ovary_female_adult_51_years	chr16	66408513	66408525	66408519	+	High_confidence	3	4	9	0.535225	3.000000	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.777778
ovary_female_adult_51_years	chr12	98419800	98419801	98419800	+	High_confidence	12	12	12	0.713634	3.418296	chr12	98419579	98419922	LTR|ERVL|LTR18C	+	chr12	98419835	98423015	STRG.106736.1	+	98419835,98421417,98422458	98419945,98421507,98423015	0.666667
ovary_female_adult_51_years	chr14	67886552	67886566	67886552	+	High_confidence	3	3	8	0.475756	2.500000	chr14	67886207	67886761	LTR|ERVL-MaLR|MLT1F2	-	chr14	67886597	68540249	RAD51B|ENST00000497460.5	+	67886597,67887020,68291883,68411423,68468171,68540199	67886629,67887204,68291980,68411527,68468250,68540249	0.625000
ovary_female_adult_51_years	chr9	126376414	126376436	126376414	+	RAMPAGE_only	10	10	33	1.962493	4.327820	chr9	126374892	126376520	LINE|L1|HAL1	-	chr9	126385543	126507039	STRG.86778.2	+	126385543,126386561,126392065,126395574,126421853,126481368,126483972,126503176	126385584,126386658,126392195,126395697,126421948,126481424,126484032,126507039	0.787879
ovary_female_adult_51_years	chr6	108960936	108960953	108960936	+	High_confidence	13	13	20	1.189389	4.121928	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108960923	108973983	STRG.60848.5	+	108960923,108961571,108962013,108964179,108964979,108973356	108961104,108961694,108962127,108964312,108965140,108973983	0.950000
ovary_female_adult_51_years	chr6	26474333	26474346	26474345	+	RAMPAGE_only	3	3	9	0.535225	2.947703	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.777778
ovary_female_adult_51_years	chr14	96451489	96451525	96451489	+	RAMPAGE_only	3	4	11	0.654164	3.121928	chr14	96451524	96451593	LINE|RTE-BovB|MamRTE1	+	chr14	96392110	96489427	AK7|ENST00000267584.8	+	96392110,96398074,96404756,96408846,96420821,96437834,96442729,96446516,96449801,96451420,96456346,96458082,96471477,96472686,96478464,96482998,96486897,96488304	96392259,96398263,96404865,96408941,96420932,96437915,96442818,96446607,96449879,96451570,96456475,96458212,96471606,96472755,96478662,96483219,96487056,96489427	0.909091
ovary_female_adult_51_years	chrX	32566162	32566213	32566192	-	High_confidence	5	6	13	0.773103	3.418296	chrX	32566105	32566237	LINE|CR1|L3	+	chrX	31932115	32566189	STRG.145353.8	-	31932115,31968338,32216915,32287528,32310081,32342099,32343133,32345942,32348405,32362787,32364581,32365019,32380509,32386309,32389500,32390070,32411751,32438240,32441179,32448455,32454661,32463438,32464585,32468497,32472163,32484918,32491276,32501754,32518007,32545158,32565701,32566140	31932227,31968514,32217063,32287701,32310276,32342282,32343286,32346080,32348528,32362958,32364710,32365199,32380680,32386465,32389674,32390181,32411913,32438390,32441314,32448638,32454832,32463594,32464699,32468710,32472309,32485099,32491518,32501842,32518131,32545334,32565881,32566189	0.923077
ovary_female_adult_51_years	chr16	21511577	21511582	21511581	-	RAMPAGE_only	4	6	8	0.475756	2.500000	chr16	21511306	21511594	LTR|ERV1|MER4B	+	chr16	21446682	21520010	STRG.123373.1	-	21446682,21447927,21448461,21449588,21452581,21452931,21454086,21455342,21455675,21456259,21457010,21457770,21457961,21458520,21459779,21460089,21463702,21464715,21467091,21469746,21471653,21472672,21473123,21476598,21478090,21479441,21484371,21487577,21495170,21501776,21519827	21447197,21448087,21448609,21449698,21452783,21453074,21454241,21455507,21455872,21456459,21457151,21457872,21458049,21458639,21459935,21460220,21463993,21464817,21467316,21469919,21471751,21472745,21473249,21476812,21478146,21479578,21484535,21487616,21495427,21502321,21520010	0.875000
ovary_female_adult_51_years	chr17	27530781	27530809	27530795	-	RAMPAGE_only	8	8	36	2.140901	4.291879	chr17	27530659	27530810	LINE|L1|L1ME4a	-	chr17	27526385	27527223	AC069366.1|ENST00000583159.1	-	27526385	27527223	0.500000
ovary_female_adult_51_years	chr8	18063185	18063216	18063185	-	High_confidence	2	2	10	0.594695	2.725481	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.900000
ovary_female_adult_51_years	chr11	123061128	123061322	123061256	-	High_confidence	35	39	140	8.325726	6.211102	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.921429
ovary_female_adult_51_years	chr2	200889279	200889318	200889293	-	High_confidence	52	52	121	7.195806	5.761256	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.685950
ovary_female_adult_51_years	chr3	114624940	114625007	114624984	-	High_confidence	40	45	249	14.807899	6.133551	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.714859
ovary_female_adult_51_years	chr22	29801207	29801244	29801243	-	RAMPAGE_only	3	5	15	0.892042	3.521641	chr22	29801224	29801380	LINE|L2|L2	+	chr22	29788610	29804824	ASCC2|ENST00000487486.5	-	29788610,29790468,29792432,29793359,29800990,29801993,29804637	29789184,29790548,29792535,29793676,29801110,29802208,29804824	0.933333
ovary_female_adult_51_years	chrX	129493040	129493058	129493057	-	RAMPAGE_only	5	5	10	0.594695	2.921928	chrX	129492703	129493323	LINE|L1|L1ME4a	+	chrX	129446845	129523405	SMARCA1|ENST00000371121.4	-	129446845,129448332,129465519,129465843,129468772,129471203,129480700,129481074,129487017,129488936,129490059,129491940,129493039,129496749,129497844,129499731,129504733,129506079,129507940,129511803,129515686,129515893,129516330,129518360,129523196	129447233,129448443,129465732,129465962,129468905,129471326,129480814,129481185,129487137,129489085,129490192,129492093,129493075,129496871,129498071,129499841,129504802,129506211,129508096,129511983,129515787,129515994,129516497,129518447,129523405	0.900000
ovary_female_adult_51_years	chr4	152412488	152412498	152412488	-	High_confidence	3	3	14	0.832573	3.392747	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.928571
ovary_female_adult_51_years	chr19	51886854	51886866	51886865	-	RAMPAGE_only	3	5	10	0.594695	2.947703	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51878400	51887889	ZNF577|ENST00000638538.1	-	51878400,51880322,51880678,51886115,51886820,51887831	51878515,51880401,51880877,51886145,51886912,51887889	0.600000
ovary_female_adult_51_years	chr4	4036307	4036308	4036307	+	RAMPAGE_only	14	14	14	0.832573	3.093069	chr4	4033941	4037122	LTR|ERV1|HERVS71-int	-	chr4	4074193	4075341	STRG.37711.2	+	4074193	4075341	0.571429
ovary_female_adult_51_years	chr2	231401167	231401168	231401167	+	RAMPAGE_only	9	9	12	0.713634	2.584963	chr2	231401206	231405702	LTR|ERV1|HERVE-int	+	chr2	231395542	231408801	STRG.24577.1	+	231395542,231397730,231406023	231395814,231404514,231408801	1.000000
ovary_female_adult_51_years	chr21	8817798	8817799	8817798	+	RAMPAGE_only	5	6	7	0.416286	2.584963	chr21	8817416	8819072	LINE|L1|L1PB	-	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	0.857143
ovary_female_adult_51_years	chr16	68834300	68834331	68834300	+	RAMPAGE_only	2	2	9	0.535225	2.947703	chr16	68834273	68834516	SINE|Alu|AluJr	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.888889
ovary_female_adult_51_years	chr9	123179128	123179140	123179139	-	RAMPAGE_only	3	3	8	0.475756	2.521641	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.875000
ovary_female_adult_51_years	chr7	102822458	102822461	102822458	-	RAMPAGE_only	34	38	59	3.508699	5.149026	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.610169
ovary_female_adult_51_years	chr17	30456469	30456514	30456513	+	RAMPAGE_only	2	2	8	0.475756	2.521641	chr17	30456561	30456872	SINE|Alu|AluSx1	+	chr17	30451809	30464947	CPD|ENST00000579502.1	+	30451809,30455338,30456255,30462395,30464587	30451846,30455470,30456324,30462469,30464947	0.500000
ovary_female_adult_51_years	chr8	85378112	85378113	85378112	-	High_confidence	8	8	8	0.475756	2.750000	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	1.000000
ovary_female_adult_51_years	chr21	29434210	29434222	29434221	+	High_confidence	3	3	12	0.713634	3.027169	chr21	29434091	29434453	LTR|ERVL-MaLR|THE1B	+	chr21	29434257	29630745	STRG.141231.2	+	29434257,29597569,29630538	29434369,29597694,29630745	0.500000
ovary_female_adult_51_years	chr1	7913248	7913268	7913248	-	RAMPAGE_only	16	18	31	1.843554	4.155652	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.741935
ovary_female_adult_51_years	chr14	102235451	102235481	102235480	-	High_confidence	4	5	20	1.189389	3.621928	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.950000
ovary_female_adult_51_years	chr21	42812820	42812821	42812820	+	High_confidence	34	34	35	2.081432	3.899040	chr21	42812433	42812948	LTR|ERV1|LTR10C	+	chr21	42812840	42814035	STRG.141861.1	+	42812840	42814035	0.914286
ovary_female_adult_51_years	chr15	44882574	44882612	44882574	-	High_confidence	15	18	70	4.162863	5.640921	chr15	44877921	44882678	LTR|ERV1|HUERS-P1-int	-	chr15	44826370	44882600	STRG.118567.2	-	44826370,44828449,44831601,44832326,44835181,44839370,44847397,44850353,44881494,44882317	44827221,44828571,44831703,44832392,44835300,44839530,44847562,44850387,44881605,44882600	0.685714
ovary_female_adult_51_years	chr8	102930390	102930437	102930390	+	High_confidence	7	8	32	1.903023	4.696132	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.562500
ovary_female_adult_51_years	chr9	107222236	107222246	107222236	+	High_confidence	11	13	37	2.200370	4.553652	chr9	107221990	107223032	DNA|TcMar-Tigger|Tigger6a	+	chr9	107222254	107224055	STRG.85672.1	+	107222254,107223805	107222734,107224055	0.756757
ovary_female_adult_51_years	chr5	109383497	109383504	109383503	-	High_confidence	4	4	10	0.594695	2.725481	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.900000
ovary_female_adult_51_years	chr1	20028387	20028426	20028407	+	High_confidence	51	79	137	8.147318	6.433656	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028429	20091158	PLA2G5|ENST00000465698.5	+	20028429,20059631,20068872,20084820,20086082,20088824,20089788,20090567	20028709,20059692,20069032,20084870,20086227,20088943,20089895,20091158	0.781022
ovary_female_adult_51_years	chr16	67571154	67571189	67571154	+	High_confidence	2	3	10	0.594695	3.321928	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	1.000000
ovary_female_adult_51_years	chr7	158853156	158853179	158853178	+	RAMPAGE_only	8	8	17	1.010981	3.702820	chr7	158853204	158853451	LTR|ERV1|MER4B	+	chr7	158856577	158946192	WDR60|NM_018051.4	+	158856577,158869854,158871141,158876608,158879683,158884563,158887020,158891264,158901738,158902375,158905988,158911549,158912984,158914232,158918739,158922376,158923570,158926186,158926401,158926991,158930454,158934128,158934417,158941924,158945580	158856750,158869908,158871562,158876691,158879989,158884619,158887075,158891333,158901816,158902595,158906091,158911679,158913096,158914321,158918869,158922549,158923733,158926300,158926463,158927043,158930515,158934228,158934549,158942148,158946192	0.882353
ovary_female_adult_51_years	chr1	230604837	230604889	230604888	-	High_confidence	19	19	55	3.270821	5.223111	chr1	230601648	230604929	LTR|ERV1|HERVH-int	+	chr1	230556143	230604949	STRG.11519.3	-	230556143,230604663	230556361,230604949	0.545455
ovary_female_adult_51_years	chr17	4736349	4736362	4736361	-	High_confidence	3	4	6	0.356817	2.584963	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.833333
ovary_female_adult_51_years	chr1	209529893	209529919	209529918	-	High_confidence	16	16	30	1.784084	3.977747	chr1	209529827	209529988	LTR|ERVL-MaLR|MLT1O	+	chr1	209516661	209529728	STRG.10101.2	-	209516661,209529635	209517353,209529728	0.700000
ovary_female_adult_51_years	chr7	93591324	93591326	93591324	+	High_confidence	7	10	13	0.773103	3.026987	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591572	93911075	GNGT1|ENST00000455502.5	+	93591572,93886505,93906735,93909482	93591771,93886549,93906842,93911075	0.615385
ovary_female_adult_51_years	chr1	46804457	46804478	46804477	+	RAMPAGE_only	4	4	8	0.475756	2.500000	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.625000
ovary_female_adult_51_years	chr21	28048446	28048447	28048446	+	High_confidence	114	116	124	7.374215	4.075685	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.951613
ovary_female_adult_51_years	chr1	46804345	46804386	46804345	+	RAMPAGE_only	5	5	17	1.010981	3.577820	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.529412
ovary_female_adult_51_years	chr5	96934454	96934455	96934454	+	RAMPAGE_only	4	4	6	0.356817	2.584963	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	1.000000
ovary_female_adult_51_years	chr13	30743851	30743885	30743872	+	RAMPAGE_only	3	3	10	0.594695	2.947703	chr13	30743467	30743894	LINE|L2|L2c	+	chr13	30735507	30764426	ALOX5AP|ENST00000380490.4	+	30735507,30744059,30752051,30755943,30763943	30735675,30744159,30752122,30756025,30764426	0.900000
ovary_female_adult_51_years	chr6	31186529	31186538	31186529	-	High_confidence	2	2	8	0.475756	2.750000	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31164600	31186404	STRG.57022.4	-	31164600,31165127,31165570,31165926,31177638	31164867,31165286,31165701,31175955,31186404	1.000000
ovary_female_adult_51_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	76	76	76	4.519680	5.438588	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.934211
ovary_female_adult_51_years	chr5	172854666	172854703	172854702	+	RAMPAGE_only	4	4	13	0.773103	3.546594	chr5	172854401	172854991	DNA|TcMar-Tigger|MER6A	+	chr5	172834384	172924061	ERGIC1|ENST00000520642.5	+	172834384,172888698,172897001,172914713,172915517,172924004	172834433,172888760,172897074,172914838,172915690,172924061	0.538462
ovary_female_adult_51_years	chr7	101308269	101308317	101308299	+	High_confidence	10	14	52	3.092413	5.339769	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.923077
ovary_female_adult_51_years	chr1	51297901	51297936	51297912	-	High_confidence	4	4	18	1.070451	3.419382	chr1	51297625	51298239	LINE|L2|L2a	+	chr1	51287985	51297960	TTC39A|ENST00000534098.1	-	51287985,51288838,51290004,51290513,51294390,51297790	51288280,51288955,51290119,51290625,51294511,51297960	0.888889
ovary_female_adult_51_years	chr8	99891978	99892057	99892056	-	RAMPAGE_only	17	17	127	7.552623	4.811058	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
ovary_female_adult_51_years	chr6	169725721	169725763	169725762	-	High_confidence	7	10	44	2.616657	4.600456	chr6	169725736	169726118	LTR|ERV1|MER65A	+	chr6	169725090	169725854	AL354892.2|ENST00000413088.1	-	169725090,169725420,169725826	169725316,169725569,169725854	0.545455
ovary_female_adult_51_years	chrX	107156231	107156259	107156258	-	RAMPAGE_only	6	6	13	0.773103	3.251629	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.615385
ovary_female_adult_51_years	chr9	127451076	127451108	127451107	-	High_confidence	4	4	9	0.535225	2.641604	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.888889
ovary_female_adult_51_years	chr19	46413540	46413612	46413611	-	High_confidence	51	51	294	17.484025	6.318683	chr19	46413579	46413731	LTR|Gypsy|LTR104_Mam	-	chr19	46410378	46413564	CCDC8|ENST00000307522.4	-	46410378	46413564	0.986395
ovary_female_adult_51_years	chr1	78620057	78620058	78620057	+	High_confidence	11	14	16	0.951512	3.327820	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78619921	78628207	IFI44L|ENST00000452835.1	+	78619921,78620456,78627905	78620058,78620571,78628207	0.625000
ovary_female_adult_51_years	chr20	24930628	24930666	24930639	+	High_confidence	18	18	107	6.363234	5.710806	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930637	24932971	STRG.138565.2	+	24930637,24931328	24930774,24932971	0.981308
ovary_female_adult_51_years	chr5	160187371	160187413	160187412	+	High_confidence	30	39	180	10.704505	5.608870	chr5	160187374	160187670	LINE|L2|L2b	-	chr5	160187366	160238735	FABP6|ENST00000393980.8	+	160187366,160199048,160213735,160229545,160232097,160234819,160238605	160187454,160199157,160213819,160229624,160232273,160234909,160238735	0.927778
ovary_female_adult_51_years	chr5	146477427	146477435	146477434	+	High_confidence	9	9	21	1.248859	4.084184	chr5	146477366	146477643	LINE|L1|L1MEf	-	chr5	146478417	146480518	TCERG1|ENST00000509810.5	+	146478417,146479854,146480027	146478653,146479911,146480518	0.523810
ovary_female_adult_51_years	chrX	72305913	72305914	72305913	-	High_confidence	9	9	9	0.535225	2.947703	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	1.000000
ovary_female_adult_51_years	chr19	52616906	52616934	52616906	-	RAMPAGE_only	4	4	10	0.594695	2.521928	chr19	52616863	52617165	LINE|L1|L1PA8	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	1.000000
ovary_female_adult_51_years	chr16	761096	761134	761114	+	High_confidence	191	216	909	54.057751	6.756406	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.951595
ovary_female_adult_51_years	chr13	49495599	49495633	49495632	+	High_confidence	3	3	10	0.594695	2.921928	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495609	49528992	PHF11|NM_001040443.2	+	49495609,49506634,49513058,49518017,49520893,49522042,49523174,49524084,49526386,49528510	49496095,49506756,49513166,49518151,49520940,49522107,49523241,49524216,49526458,49528992	1.000000
ovary_female_adult_51_years	chr3	127722784	127722842	127722784	-	High_confidence	6	6	26	1.546206	3.840266	chr3	127722658	127722813	SINE|MIR|MIRb	-	chr3	127692116	127722570	MGLL|ENST00000487473.5	-	127692116,127710575,127721052,127722429	127692323,127710665,127721163,127722570	0.692308
ovary_female_adult_51_years	chr6	48111154	48111194	48111177	-	RAMPAGE_only	39	39	240	14.272673	6.878275	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	48005929	48069961	STRG.58147.4	-	48005929,48068229,48068952	48009114,48068641,48069961	0.620833
ovary_female_adult_51_years	chr14	106184150	106184209	106184150	+	High_confidence	36	37	117	6.957928	6.205626	chr14	106183625	106184272	LTR|ERV1|LTR6A	-	chr14	106184155	106210141	STRG.116376.2	+	106184155,106193853,106196759,106199202,106205075,106206077	106184353,106193913,106197002,106202463,106205151,106210141	0.880342
ovary_female_adult_51_years	chr16	20676155	20676202	20676161	-	High_confidence	20	23	75	4.460210	5.474798	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.880000
ovary_female_adult_51_years	chr2	31542028	31542066	31542032	-	High_confidence	65	67	215	12.785937	6.128986	chr2	31541502	31542215	LINE|L1|L1M1	+	chr2	31522483	31542025	STRG.14126.2	-	31522483,31529306,31531370,31533602,31541955	31526262,31529457,31531472,31533766,31542025	0.972093
ovary_female_adult_51_years	chr22	36239977	36240009	36239977	-	High_confidence	5	5	30	1.784084	4.164735	chr22	36239876	36239982	SINE|MIR|MIRb	+	chr22	36226208	36239954	APOL2|NM_145637.2	-	36226208,36231339,36233152,36233401,36239440,36239731	36228280,36231466,36233241,36233455,36239561,36239954	0.933333
ovary_female_adult_51_years	chr11	122486894	122486937	122486935	-	High_confidence	6	14	34	2.021962	4.510709	chr11	122486854	122487356	LTR|ERVL|LTR50	+	chr11	122486287	122486879	STRG.100697.1	-	122486287	122486879	0.676471
ovary_female_adult_51_years	chr2	6866599	6866635	6866634	-	High_confidence	5	5	9	0.535225	3.169925	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6848308	6866635	CMPK2|NR_046236.1	-	6848308,6851449,6861183,6863463,6866425	6849973,6851683,6861385,6863578,6866635	0.888889
ovary_female_adult_51_years	chr1	54900947	54900948	54900947	+	High_confidence	5	5	8	0.475756	2.750000	chr1	54900194	54903183	LTR|ERV1|HERVH-int	-	chr1	54900665	54992293	STRG.2911.2	+	54900665,54908769,54986096,54991835	54901207,54908858,54986446,54992293	0.500000
ovary_female_adult_51_years	chr9	128684459	128684485	128684484	-	High_confidence	12	16	58	3.449229	5.253600	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128684484	STRG.86888.2	-	128663133,128684365	128663400,128684484	0.500000
ovary_female_adult_51_years	chr3	48430168	48430190	48430189	-	High_confidence	6	6	10	0.594695	3.169925	chr3	48430133	48430258	SINE|MIR|MIRb	+	chr3	48403853	48430051	PLXNB1|ENST00000296440.10	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48430007	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48430051	0.700000
ovary_female_adult_51_years	chr16	72073244	72073245	72073244	+	RAMPAGE_only	4	5	6	0.356817	2.584963	chr16	72072861	72073376	LTR|ERV1|LTR10B	+	chr16	72063228	72077245	HPR|ENST00000356967.6	+	72063228,72073891,72074283,72076329	72063260,72073977,72074359,72077245	0.666667
ovary_female_adult_51_years	chr1	9085146	9085163	9085162	-	RAMPAGE_only	3	3	8	0.475756	2.500000	chr1	9085146	9085738	LTR|ERV1|MER4E	-	chr1	9047610	9088443	SLC2A5|ENST00000464985.5	-	9047610,9057447,9058151,9069503,9085013,9088371	9047734,9057608,9058250,9069594,9085142,9088443	0.500000
ovary_female_adult_51_years	chr11	58578102	58578145	58578102	-	High_confidence	17	19	93	5.530661	5.526014	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58546759	58578116	STRG.96626.3	-	58546759,58549972,58554840,58564154,58570555,58577985	58549867,58551232,58554940,58564201,58570713,58578116	0.795699
ovary_female_adult_51_years	chr8	28090231	28090232	28090231	+	High_confidence	14	14	14	0.832573	3.093069	chr8	28089941	28090482	LTR|ERVL|LTR66	+	chr8	28090230	28191156	ELP3|ENST00000521015.5	+	28090230,28097218,28099827,28106712,28107912,28110369,28113018,28129501,28132277,28137697,28155941,28158567,28160228,28161996,28189648	28090332,28097318,28099966,28106783,28107976,28110438,28113173,28129663,28132404,28137891,28156032,28158633,28160456,28162078,28191156	0.928571
ovary_female_adult_51_years	chr10	32446977	32447003	32446977	+	High_confidence	5	6	15	0.892042	3.521641	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.933333
ovary_female_adult_51_years	chr2	86482554	86482578	86482577	+	RAMPAGE_only	3	4	8	0.475756	2.750000	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	1.000000
ovary_female_adult_51_years	chr9	129489111	129489140	129489111	+	High_confidence	2	2	12	0.713634	3.095795	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.500000
ovary_female_adult_51_years	chr2	176758044	176758095	176758044	-	High_confidence	6	6	29	1.724615	4.384517	chr2	176757632	176758199	LINE|L2|L2b	+	chr2	176673387	176758033	STRG.21286.1	-	176673387,176679681,176757319,176757771	176673864,176679905,176757379,176758033	0.827586
ovary_female_adult_51_years	chr1	45616352	45616393	45616392	+	High_confidence	3	3	9	0.535225	2.947703	chr1	45616440	45616559	SINE|Alu|FLAM_C	+	chr1	45617236	45618246	NASP|ENST00000472408.1	+	45617236,45618060	45617591,45618246	0.888889
ovary_female_adult_51_years	chr16	20674647	20674766	20674715	+	High_confidence	10	10	106	6.303764	5.581411	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674607	20755608	STRG.123321.7	+	20674607,20718349,20749316,20749909,20755572	20679455,20718493,20749368,20750003,20755608	0.877358
ovary_female_adult_51_years	chr5	133089664	133089678	133089677	+	RAMPAGE_only	11	12	20	1.189389	4.021928	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
ovary_female_adult_51_years	chr4	44866835	44866882	44866881	+	High_confidence	7	7	19	1.129920	3.461320	chr4	44864689	44868696	LINE|L1|L1PA16	-	chr4	44866910	44985575	STRG.40238.2	+	44866910,44871805,44892957,44985249	44867031,44871902,44893082,44985575	0.947368
ovary_female_adult_51_years	chr4	4269594	4269614	4269613	-	High_confidence	9	10	29	1.724615	3.767993	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.965517
ovary_female_adult_51_years	chr2	219730121	219730129	219730128	+	RAMPAGE_only	7	7	14	0.832573	3.392747	chr2	219729861	219730382	LINE|L1|L1ME1	-	chr2	219685491	219737937	AC009502.1|ENST00000606673.1	+	219685491,219737453	219685609,219737937	0.857143
ovary_female_adult_51_years	chr11	86938474	86938495	86938474	-	RAMPAGE_only	6	9	19	1.129920	3.636894	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86892213	86922104	AP001528.2|ENST00000528660.1	-	86892213,86896412,86921235	86892372,86896540,86922104	1.000000
ovary_female_adult_51_years	chr19	5680251	5680277	5680251	-	High_confidence	2	2	8	0.475756	2.750000	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
ovary_female_adult_51_years	chr1	23417904	23417918	23417904	-	RAMPAGE_only	3	3	8	0.475756	2.521641	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.875000
ovary_female_adult_51_years	chr9	73080369	73080370	73080369	-	High_confidence	9	9	9	0.535225	2.725481	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.777778
ovary_female_adult_51_years	chr15	75347042	75347082	75347042	+	High_confidence	8	8	22	1.308328	3.844233	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347089	75355245	NEIL1|ENST00000561643.5	+	75347089,75347202,75348883,75352110,75352323,75352601,75354652,75354963	75347110,75347473,75349339,75352230,75352387,75354492,75354818,75355245	0.954545
ovary_female_adult_51_years	chr16	15798662	15798665	15798662	-	RAMPAGE_only	12	12	31	1.843554	4.418157	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.935484
ovary_female_adult_51_years	chr20	50131139	50131162	50131139	-	High_confidence	5	5	14	0.832573	3.026987	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.928571
ovary_female_adult_51_years	chr2	174410287	174410330	174410329	+	High_confidence	3	3	12	0.713634	3.095795	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.500000
ovary_female_adult_51_years	chr10	72355126	72355146	72355145	-	High_confidence	7	7	17	1.010981	3.875000	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.941176
ovary_female_adult_51_years	chr1	8023319	8023351	8023319	-	RAMPAGE_only	3	3	11	0.654164	3.095795	chr1	8023273	8023578	SINE|Alu|AluJb	-	chr1	8013738	8026296	STRG.483.4	-	8013738,8015307,8015494	8014396,8015384,8026296	1.000000
ovary_female_adult_51_years	chr1	196715668	196715679	196715668	+	RAMPAGE_only	5	5	17	1.010981	3.852169	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	1.000000
ovary_female_adult_51_years	chr7	106269395	106269456	106269455	-	RAMPAGE_only	8	8	28	1.665145	3.719295	chr7	106269454	106269610	LINE|RTE-X|L4_B_Mam	+	chr7	106248284	106284887	STRG.70962.2	-	106248284,106253016,106254363,106261587,106263391,106268463,106269153,106274945,106277022,106284827	106251193,106253151,106254504,106261707,106263617,106268600,106272658,106275049,106277179,106284887	0.500000
ovary_female_adult_51_years	chr18	71578955	71578956	71578955	-	High_confidence	21	21	28	1.665145	4.440636	chr18	71578735	71579218	LTR|ERVL|LTR66	-	chr18	71519961	71578956	LINC01541|ENST00000568095.5	-	71519961,71521988,71527776,71531622,71534213,71548598,71578806	71521082,71523256,71527967,71531816,71534296,71548696,71578956	0.892857
ovary_female_adult_51_years	chr1	9085257	9085258	9085257	-	RAMPAGE_only	15	16	16	0.951512	3.240224	chr1	9085146	9085738	LTR|ERV1|MER4E	-	chr1	9047610	9088443	SLC2A5|ENST00000464985.5	-	9047610,9057447,9058151,9069503,9085013,9088371	9047734,9057608,9058250,9069594,9085142,9088443	0.750000
ovary_female_adult_51_years	chr4	102431175	102431180	102431179	-	High_confidence	4	5	8	0.475756	2.750000	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	1.000000
ovary_female_adult_51_years	chr11	77571425	77571460	77571425	+	High_confidence	4	4	18	1.070451	3.572469	chr11	77571455	77571917	LTR|ERV1|HERV3-int	+	chr11	77571088	77575662	LOC646029|NR_130930.1	+	77571088,77571514,77574210	77571310,77571685,77575662	0.944444
ovary_female_adult_51_years	chr6	77369106	77369167	77369166	-	RAMPAGE_only	29	40	105	6.244295	6.026027	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77151126	77273309	STRG.59450.2	-	77151126,77271339,77273026	77151280,77271493,77273309	0.676190
ovary_female_adult_51_years	chr22	36481305	36481346	36481334	-	High_confidence	15	17	40	2.378779	4.296439	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.875000
ovary_female_adult_51_years	chr9	88065525	88065560	88065559	-	High_confidence	11	11	29	1.724615	4.180451	chr9	88065274	88065849	LTR|ERVL|LTR66	-	chr9	88037053	88066166	STRG.84505.1	-	88037053,88044099,88065456	88040791,88044277,88066166	0.586207
ovary_female_adult_51_years	chr7	106275872	106275933	106275872	-	RAMPAGE_only	5	5	26	1.546206	3.501629	chr7	106275752	106276050	SINE|Alu|AluSz	+	chr7	106275326	106284950	NAMPT|ENST00000489732.1	-	106275326,106284827	106277179,106284950	0.807692
ovary_female_adult_51_years	chr2	55281005	55281031	55281005	+	RAMPAGE_only	5	6	13	0.773103	3.418296	chr2	55280758	55281335	LTR|ERV1|LTR10C	-	chr2	55314160	55340227	AC012358.3|ENST00000630025.2	+	55314160,55329421,55332138,55339502	55314251,55329713,55332261,55340227	0.538462
ovary_female_adult_51_years	chr4	79086136	79086156	79086136	+	High_confidence	2	2	9	0.535225	2.503258	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.777778
ovary_female_adult_51_years	chr12	131466962	131466977	131466976	-	RAMPAGE_only	3	4	8	0.475756	2.521641	chr12	131466860	131467153	LTR|ERVL-MaLR|MLT1J1	-	chr12	131462853	131463056	STRG.108124.1	-	131462853	131463056	0.625000
ovary_female_adult_51_years	chr11	64226142	64226180	64226158	-	High_confidence	66	67	287	17.067739	6.963772	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.912892
ovary_female_adult_51_years	chr15	55457565	55457590	55457578	-	RAMPAGE_only	11	11	26	1.546206	4.103910	chr15	55456476	55458791	LINE|L1|L1PB1	+	chr15	55410524	55498341	DNAAF4|ENST00000524160.5	-	55410524,55411108,55432496,55434904,55439471,55450221,55491122,55497711,55498206	55410843,55411155,55432602,55435058,55439581,55450367,55491256,55497859,55498341	0.576923
ovary_female_adult_51_years	chr19	36850349	36850372	36850371	+	High_confidence	5	5	19	1.129920	3.794653	chr19	36850362	36850429	LTR|ERV1|MER67D	-	chr19	36850463	36851898	STRG.135555.1	+	36850463	36851898	0.578947
ovary_female_adult_51_years	chr22	41940217	41940222	41940221	-	High_confidence	25	25	47	2.795065	4.697894	chr22	41939903	41940386	LINE|L2|L2a	+	chr22	41938720	41940219	CENPM|NM_001110215.2	-	41938720,41940138	41939196,41940219	0.680851
ovary_female_adult_51_years	chr14	106193850	106193891	106193865	+	High_confidence	5	8	23	1.367798	4.277613	chr14	106193712	106194474	LINE|L1|L1P4	-	chr14	106193250	106210141	STRG.116376.5	+	106193250,106196759,106199016,106205075,106206077	106193913,106197002,106202463,106205151,106210141	0.826087
ovary_female_adult_51_years	chr3	33838256	33838293	33838292	+	RAMPAGE_only	2	2	7	0.416286	2.521641	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	1.000000
ovary_female_adult_51_years	chr7	87040212	87040223	87040212	-	High_confidence	26	27	53	3.151882	5.147640	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86941820	87040428	STRG.69270.4	-	86941820,86944898,86947726,86964903,87039755	86942104,86945046,86947922,86965024,87040428	0.924528
ovary_female_adult_51_years	chr7	106285261	106285262	106285261	+	High_confidence	9	9	13	0.773103	3.238901	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106285479	106286326	AC007032.1|ENST00000609281.1	+	106285479	106286326	0.923077
ovary_female_adult_51_years	chr11	3477038	3477073	3477067	-	High_confidence	29	29	160	9.515116	6.148618	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3475768	3477049	STRG.93738.1	-	3475768,3476942	3476373,3477049	0.825000
ovary_female_adult_51_years	chr14	45715967	45715968	45715967	-	High_confidence	23	23	29	1.724615	4.450212	chr14	45715770	45716282	LTR|ERVK|LTR3B_	-	chr14	45706271	45715952	LINC02303|ENST00000555442.1	-	45706271,45711898,45715349	45706502,45711953,45715952	0.931034
ovary_female_adult_51_years	chr11	65431602	65431632	65431602	+	RAMPAGE_only	3	3	15	0.892042	3.378783	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.933333
ovary_female_adult_51_years	chr8	22392831	22392884	22392883	+	RAMPAGE_only	5	5	15	0.892042	3.323231	chr8	22392932	22392982	LINE|L2|L2b	+	chr8	22398227	22408407	SLC39A14|ENST00000519960.5	+	22398227,22404695,22408309	22398311,22404980,22408407	0.600000
ovary_female_adult_51_years	chr14	101523286	101523320	101523319	-	High_confidence	8	8	23	1.367798	4.027169	chr14	101523302	101523416	LINE|L2|L2c	+	chr14	101519568	101523396	STRG.116006.2	-	101519568	101523396	0.956522
ovary_female_adult_51_years	chr8	19821218	19821236	19821218	+	High_confidence	2	2	8	0.475756	2.750000	chr8	19821161	19821436	LTR|ERVL-MaLR|MLT1C	-	chr8	19820948	19824492	INTS10|ENST00000522081.1	+	19820948,19823300,19823872	19822520,19823441,19824492	1.000000
ovary_female_adult_51_years	chr19	53577986	53578219	53578130	+	RAMPAGE_only	24	26	145	8.623074	5.102609	chr19	53577967	53578694	DNA|TcMar-Tigger|MER44C	+	chr19	53555306	53580269	ZNF331|ENST00000648397.1	+	53555306,53555844,53563762,53569303,53571603,53576696	53555581,53555908,53563792,53569385,53571730,53580269	1.000000
ovary_female_adult_51_years	chr16	20674403	20674458	20674404	+	High_confidence	39	52	130	7.731031	5.549267	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674415	20688932	STRG.123321.12	+	20674415,20674673,20679157	20674477,20675055,20688932	0.907692
ovary_female_adult_51_years	chr17	59619894	59619923	59619894	+	High_confidence	367	410	1044	62.086130	6.526475	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.886973
ovary_female_adult_51_years	chr3	140334958	140334969	140334968	+	RAMPAGE_only	6	6	10	0.594695	2.947703	chr3	140334833	140335165	LTR|ERVL|LTR86B2	+	chr3	139935186	140557055	CLSTN2|ENST00000511524.1	+	139935186,140175950,140403628,140404557,140421124,140448518,140459520,140466609,140532323,140546514,140556512	139935483,140176073,140403824,140404766,140421274,140448704,140459769,140466731,140532486,140546681,140557055	0.600000
ovary_female_adult_51_years	chr1	9239792	9239876	9239813	+	High_confidence	6	6	66	3.924985	5.024278	chr1	9239801	9239853	LINE|Penelope|Penelope1_Vert	+	chr1	9239843	9271337	H6PD|NM_001282587.1	+	9239843,9244924,9246965,9262058,9263508	9240018,9245561,9247083,9262328,9271337	0.772727
ovary_female_adult_51_years	chr17	6853863	6853929	6853886	+	High_confidence	10	10	61	3.627638	5.512544	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853860	6902192	ALOX12P2|ENST00000574727.5	+	6853860,6854213,6892002,6894317,6894883,6895095,6895342,6896315,6896553,6898528,6898799,6899390,6899592,6899867	6854060,6854435,6892075,6894513,6895006,6895199,6895503,6896459,6896763,6898698,6898929,6899490,6899760,6902192	0.737705
ovary_female_adult_51_years	chr6	127330902	127330923	127330917	-	High_confidence	2	2	8	0.475756	2.521641	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.875000
ovary_female_adult_51_years	chr22	23527443	23527492	23527443	+	High_confidence	56	58	217	12.904876	5.687041	chr22	23527401	23527785	LINE|L2|L2b	-	chr22	23527427	23547797	STRG.142545.1	+	23527427,23536971,23538760	23527564,23537136,23547797	0.972350
ovary_female_adult_51_years	chr15	45369702	45369707	45369706	-	High_confidence	4	4	9	0.535225	2.750000	chr15	45369640	45369710	LINE|L2|L2b	+	chr15	45364823	45369707	GATM|ENST00000558916.1	-	45364823,45366045,45366370,45368069,45369325	45364860,45366210,45366508,45368260,45369707	0.666667
ovary_female_adult_51_years	chr11	65431244	65431277	65431244	+	RAMPAGE_only	6	7	19	1.129920	4.037401	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
ovary_female_adult_51_years	chr7	131108707	131108708	131108707	-	High_confidence	48	49	55	3.270821	5.217488	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944292	131108099	LINC-PINT|ENST00000643135.1	-	130944292,130978507,130984052,131052424,131106544,131107719	130945835,130978528,130984109,131052555,131106617,131108099	0.509091
ovary_female_adult_51_years	chr6	28354022	28354042	28354041	-	High_confidence	17	20	58	3.449229	5.383675	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324736	28354195	ZSCAN31|ENST00000396838.6	-	28324736,28327382,28329302,28336789,28337755,28341745,28353861,28354130	28326854,28327533,28329714,28336943,28337893,28341792,28353952,28354195	0.706897
ovary_female_adult_51_years	chr2	101998957	101998978	101998957	+	High_confidence	4	4	14	0.832573	3.026987	chr2	101998446	101999045	LTR|ERVL-MaLR|MLT1H1	-	chr2	101998961	102028423	IL1R2|NR_048564.1	+	101998961,102008514,102009561,102015870,102019637,102022186,102024532,102026110,102028225	101999116,102008642,102009826,102016051,102019812,102022249,102024668,102026253,102028423	0.928571
ovary_female_adult_51_years	chr10	88234617	88234651	88234650	+	High_confidence	13	15	54	3.211352	4.202057	chr10	88234610	88234927	LINE|L2|L2c	-	chr10	88234441	88235106	STRG.91253.1	+	88234441	88235106	0.777778
ovary_female_adult_51_years	chr2	127277051	127277081	127277080	-	RAMPAGE_only	8	8	15	0.892042	3.373557	chr2	127276569	127277409	LINE|L1|HAL1	+	chr2	127257289	127290893	ERCC3|ENST00000646042.1	-	127257289,127259295,127261227,127271335,127272864,127279172,127280446,127286702,127288659,127289336	127257727,127259448,127261346,127271453,127272961,127279375,127280631,127287017,127288864,127290893	1.000000
ovary_female_adult_51_years	chrX	147937499	147937541	147937499	+	RAMPAGE_only	2	3	12	0.713634	3.027169	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.500000
ovary_female_adult_51_years	chr4	7754076	7754077	7754076	+	High_confidence	27	27	27	1.605676	4.384517	chr4	7753883	7754236	LTR|ERVL-MaLR|THE1A	+	chr4	7754089	7778928	AFAP1-AS1|NR_026892.1	+	7754089,7772203	7754159,7778928	0.629630
ovary_female_adult_51_years	chr1	176162936	176162963	176162936	-	RAMPAGE_only	3	4	12	0.713634	3.251629	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.666667
ovary_female_adult_51_years	chr6	46658569	46658593	46658569	+	High_confidence	3	3	9	0.535225	3.000000	chr6	46658495	46658626	LINE|L2|L2c	-	chr6	46658662	46668747	SLC25A27|ENST00000603486.5	+	46658662,46662375,46664773,46668708	46659046,46662498,46664886,46668747	0.777778
ovary_female_adult_51_years	chr19	15829094	15829095	15829094	+	High_confidence	8	8	8	0.475756	2.750000	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15835415	UCA1|ENST00000643818.1	+	15829094,15834501,15835217	15829338,15835114,15835415	0.500000
ovary_female_adult_51_years	chr7	154928492	154928504	154928503	+	High_confidence	34	34	64	3.806046	5.235139	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.921875
ovary_female_adult_51_years	chr9	108885822	108885840	108885822	-	RAMPAGE_only	10	14	23	1.367798	4.243300	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108867516	108893083	ELP1|ENST00000495759.5	-	108867516,108874894,108875632,108877994,108878622,108879445,108880051,108881704,108882124,108889331,108891202,108892985	108869182,108874970,108875735,108878149,108878750,108879557,108880165,108881765,108882187,108889393,108891404,108893083	0.913043
ovary_female_adult_51_years	chr4	86453149	86453203	86453202	-	High_confidence	16	16	119	7.076867	5.248119	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.840336
ovary_female_adult_51_years	chr7	47401159	47401197	47401196	-	RAMPAGE_only	7	7	33	1.962493	4.139112	chr7	47401190	47401377	LINE|CR1|L3b	-	chr7	47369496	47403425	TNS3|ENST00000469470.1	-	47369496,47396799,47400392,47400784,47403267	47369621,47396904,47400458,47400914,47403425	0.636364
ovary_female_adult_51_years	chr1	196404264	196404273	196404272	-	High_confidence	21	25	50	2.973474	4.042176	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196278515	196404327	STRG.9323.3	-	196278515,196282272,196285656,196305233,196315891,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196280988,196282356,196285758,196305345,196316021,196326889,196331261,196334060,196340570,196342249,196373248,196398671,196404327	0.800000
ovary_female_adult_51_years	chr10	29530607	29530666	29530607	-	RAMPAGE_only	2	2	10	0.594695	2.947703	chr10	29530411	29530568	SINE|Alu|FLAM_C	-	chr10	29484686	29525628	STRG.88637.9	-	29484686,29486084,29486409,29487162,29488600,29490846,29493213,29494913,29495091,29499115,29512734,29522409,29523450,29524471	29484831,29486230,29486557,29487295,29488756,29491019,29493391,29495000,29495181,29499263,29512861,29522635,29524021,29525628	0.700000
ovary_female_adult_51_years	chr2	119695390	119695419	119695402	+	High_confidence	14	14	61	3.627638	3.936417	chr2	119695338	119695525	LINE|L2|L2c	+	chr2	119695444	119751646	STRG.18535.6	+	119695444,119696979,119700345,119703619,119704092,119751562	119695525,119697110,119700470,119704008,119704218,119751646	0.950820
ovary_female_adult_51_years	chr11	134467260	134467265	134467264	+	High_confidence	15	15	29	1.724615	3.994680	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134466346	134470949	STRG.101313.3	+	134466346,134467864,134469486	134467615,134467987,134470949	0.862069
ovary_female_adult_51_years	chr7	10941130	10941148	10941144	+	RAMPAGE_only	3	3	11	0.654164	3.321928	chr7	10941109	10941301	LINE|L2|L2b	-	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.909091
ovary_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	1064	1185	1755	104.368925	5.368727	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.988034
ovary_female_adult_51_years	chr10	35449714	35449726	35449724	+	RAMPAGE_only	18	24	39	2.319309	4.455543	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.717949
ovary_female_adult_51_years	chr15	34588450	34588453	34588452	-	High_confidence	6	12	17	1.010981	3.852169	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.764706
ovary_female_adult_51_years	chr3	101466859	101466943	101466859	-	High_confidence	6	6	36	2.140901	4.892147	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101349820	101467297	STRG.30695.7	-	101349820,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101402966,101417592,101458954,101466808	101350262,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101403047,101417790,101459052,101467297	0.916667
ovary_female_adult_51_years	chr3	191259154	191259155	191259154	-	RAMPAGE_only	4	4	7	0.416286	2.807355	chr3	191258671	191259197	LTR|ERV1|LTR49-int	-	chr3	191213290	191234605	OSTN-AS1|NR_133663.1	-	191213290,191217069,191218815,191228714,191229765,191234571	191213340,191217179,191218936,191228782,191229897,191234605	0.571429
ovary_female_adult_51_years	chr2	34677544	34677569	34677552	+	High_confidence	36	41	81	4.817027	5.753024	chr2	34677192	34677662	LTR|ERV1|LTR2B	+	chr2	34677554	34737468	LINC01320|ENST00000625995.2	+	34677554,34710451,34713578,34732447,34735646,34737320	34677927,34710513,34713773,34732557,34735686,34737468	0.604938
ovary_female_adult_51_years	chr13	29479931	29479966	29479965	+	RAMPAGE_only	8	8	14	0.832573	3.700440	chr13	29479855	29480039	SINE|MIR|MIRc	+	chr13	29428708	29503257	MTUS2|ENST00000542829.1	+	29428708,29480149,29487899,29492645,29497237,29498417,29501096,29502992	29428896,29480364,29488005,29492719,29497336,29498537,29501194,29503257	0.857143
ovary_female_adult_51_years	chr14	106202299	106202337	106202299	+	RAMPAGE_only	8	8	22	1.308328	3.293455	chr14	106197571	106206819	LTR|ERV1|HERVS71-int	-	chr14	106196035	106210141	STRG.116376.4	+	106196035,106199202,106202416,106205075,106206077	106197002,106199354,106202463,106205151,106210141	0.863636
ovary_female_adult_51_years	chr12	8805177	8805194	8805178	+	High_confidence	43	52	155	9.217768	5.627895	chr12	8804878	8805281	LTR|ERV1|LTR7	+	chr12	8805198	8821081	STRG.102103.1	+	8805198,8820845	8805429,8821081	0.864516
ovary_female_adult_51_years	chr2	113117947	113117972	113117970	+	High_confidence	8	14	27	1.605676	4.056021	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.555556
ovary_female_adult_51_years	chr4	8436023	8436026	8436025	-	High_confidence	9	16	19	1.129920	3.947703	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8361482	8436154	STRG.37955.1	-	8361482,8365455,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8435922	8364748,8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8436154	0.631579
ovary_female_adult_51_years	chr22	23705467	23705503	23705483	-	RAMPAGE_only	3	3	9	0.535225	2.750000	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.888889
ovary_female_adult_51_years	chr19	55280218	55280251	55280218	-	High_confidence	6	6	15	0.892042	2.753434	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.933333
ovary_female_adult_51_years	chr12	12927723	12927737	12927733	+	High_confidence	51	51	104	6.184825	6.052516	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.701923
ovary_female_adult_51_years	chr5	66440355	66440398	66440388	-	High_confidence	25	32	117	6.957928	5.298593	chr5	66440146	66440632	LTR|ERVL-MaLR|MLT1F1	+	chr5	66439385	66440097	STRG.49077.1	-	66439385	66440097	0.598291
ovary_female_adult_51_years	chr5	139526237	139526238	139526237	+	High_confidence	725	748	962	57.209633	6.818118	chr5	139525865	139526346	LTR|ERV1|LTR2B	+	chr5	139526430	139626855	UBE2D2|ENST00000511725.5	+	139526430,139600371,139614585,139614696,139614860,139623367,139626755	139526612,139600435,139614617,139614774,139614966,139623461,139626855	0.641372
ovary_female_adult_51_years	chr14	106193778	106193807	106193778	+	High_confidence	6	6	16	0.951512	2.649397	chr14	106193712	106194474	LINE|L1|L1P4	-	chr14	106193250	106210141	STRG.116376.5	+	106193250,106196759,106199016,106205075,106206077	106193913,106197002,106202463,106205151,106210141	0.625000
ovary_female_adult_51_years	chr16	2757801	2757815	2757814	+	High_confidence	6	6	20	1.189389	3.932138	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.900000
ovary_female_adult_51_years	chr3	195696405	195696425	195696423	+	High_confidence	3	4	9	0.535225	2.500000	chr3	195696374	195696623	LINE|L1|L1PA7	+	chr3	195696436	195708504	MUC20-OT1|ENST00000620737.3	+	195696436,195699029,195708133	195696589,195699207,195708504	0.888889
ovary_female_adult_51_years	chr11	70077946	70077961	70077956	+	High_confidence	9	9	35	2.081432	4.187889	chr11	70077921	70078008	LINE|L2|L2c	-	chr11	70077979	70132033	STRG.97010.5	+	70077979,70078541,70087751,70103065,70103998,70105733,70108352,70111125,70111706,70116457,70124349,70126060,70131918	70078090,70078714,70088084,70103164,70104150,70105788,70108404,70111191,70111762,70116499,70124414,70126195,70132033	0.885714
ovary_female_adult_51_years	chr1	39026110	39026133	39026110	+	High_confidence	6	6	26	1.546206	3.994112	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
ovary_female_adult_51_years	chr16	20674986	20675007	20674986	+	High_confidence	5	5	15	0.892042	3.235926	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674607	20755608	STRG.123321.7	+	20674607,20718349,20749316,20749909,20755572	20679455,20718493,20749368,20750003,20755608	0.933333
ovary_female_adult_51_years	chr12	8681676	8681677	8681676	+	High_confidence	793	800	986	58.636900	7.790119	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.795132
ovary_female_adult_51_years	chr13	22883920	22883921	22883920	+	High_confidence	56	58	66	3.924985	5.175227	chr13	22883559	22884029	LTR|ERV1|LTR2B	+	chr13	22883929	22885083	STRG.108329.1	+	22883929	22885083	0.939394
ovary_female_adult_51_years	chr7	6590246	6590286	6590285	+	High_confidence	6	8	31	1.843554	4.195816	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.870968
ovary_female_adult_51_years	chr10	117492081	117492095	117492094	-	RAMPAGE_only	2	2	7	0.416286	2.584963	chr10	117491808	117492291	LTR|ERVL|LTR33	-	chr10	117490648	117494688	EMX2OS|ENST00000423419.1	-	117490648,117492020,117494568	117490911,117492109,117494688	0.571429
ovary_female_adult_51_years	chrX	16712879	16712959	16712889	-	High_confidence	13	14	104	6.184825	5.971839	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.990385
ovary_female_adult_51_years	chr11	125938917	125938918	125938917	-	RAMPAGE_only	5	5	8	0.475756	2.521641	chr11	125938385	125939036	LTR|ERVL|LTR50	+	chr11	125925168	125931403	AP000842.2|ENST00000526211.1	-	125925168,125926003,125931304	125925535,125926106,125931403	0.500000
ovary_female_adult_51_years	chr4	81154211	81154222	81154221	-	High_confidence	7	7	12	0.713634	3.022055	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	1.000000
ovary_female_adult_51_years	chr3	170141555	170141563	170141555	-	RAMPAGE_only	2	3	6	0.356817	2.584963	chr3	170141493	170141603	LINE|RTE-X|L4_A_Mam	+	chr3	170129384	170136670	PHC3|ENST00000497171.1	-	170129384,170136418	170129552,170136670	0.833333
ovary_female_adult_51_years	chr12	71876838	71876841	71876838	+	RAMPAGE_only	3	3	7	0.416286	2.584963	chr12	71876794	71877109	SINE|Alu|AluSz	-	chr12	71839758	71897889	TBC1D15|ENST00000491063.5	+	71839758,71854784,71872069,71872928,71880468,71884810,71893221,71894685,71895946,71896676,71897846	71839811,71854853,71872168,71873003,71880607,71885021,71893324,71894883,71896075,71896780,71897889	0.857143
ovary_female_adult_51_years	chr1	229176136	229176157	229176136	-	High_confidence	17	17	32	1.903023	4.663910	chr1	229174780	229177850	LTR|ERV1|HERVH-int	+	chr1	229138973	229177100	STRG.11436.3	-	229138973,229176804	229140703,229177100	0.593750
ovary_female_adult_51_years	chr20	50172544	50172595	50172544	+	High_confidence	4	5	18	1.070451	3.852169	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172652	50173295	STRG.139567.2	+	50172652,50172922	50172788,50173295	0.722222
ovary_female_adult_51_years	chr19	3062922	3062983	3062922	-	High_confidence	14	15	81	4.817027	5.412003	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.962963
ovary_female_adult_51_years	chr12	56157332	56157459	56157351	+	High_confidence	13	13	161	9.574585	4.889033	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.919255
ovary_female_adult_51_years	chr12	8681719	8681741	8681719	+	High_confidence	5	6	14	0.832573	3.392747	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681690	8783095	RIMKLB|ENST00000544257.5	+	8681690,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783095	0.928571
ovary_female_adult_51_years	chr1	53426712	53426751	53426727	-	RAMPAGE_only	3	3	11	0.654164	2.921928	chr1	53424768	53427698	LTR|ERV1|HERVH-int	+	chr1	53413148	53439975	SLC25A3P1|ENST00000563752.5	-	53413148,53417527,53439774	53413268,53417666,53439975	0.545455
ovary_female_adult_51_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	20	20	20	1.189389	3.721928	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
ovary_female_adult_51_years	chr1	46331888	46331917	46331916	-	High_confidence	4	4	11	0.654164	2.550341	chr1	46331235	46332068	LTR|ERV1|Harlequin-int	-	chr1	46331444	46332208	STRG.2582.8	-	46331444	46332208	0.545455
ovary_female_adult_51_years	chr4	56216106	56216142	56216141	+	High_confidence	6	6	22	1.308328	4.243300	chr4	56216025	56216165	SINE|MIR|MIR3	+	chr4	56216101	56328625	KIAA1211|ENST00000504228.6	+	56216101,56272320,56298213,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56216273,56272492,56298349,56307699,56310734,56313379,56316689,56323567,56324266,56328625	0.681818
ovary_female_adult_51_years	chr7	106012300	106012344	106012343	+	RAMPAGE_only	3	3	10	0.594695	3.121928	chr7	106012114	106012744	LINE|L2|L2a	-	chr7	106001474	106032763	STRG.70945.3	+	106001474,106004497,106015110,106015926,106017845,106020372,106022197,106024380,106026681,106028550,106030791,106032392	106001610,106013031,106015213,106016025,106018072,106020544,106022448,106024562,106026695,106028582,106030840,106032763	1.000000
ovary_female_adult_51_years	chr9	111783952	111783964	111783959	-	High_confidence	17	17	52	3.092413	4.893661	chr9	111783697	111784151	LTR|ERVL|MER70A	-	chr9	111686518	111783499	C9orf84|NM_173521.4	-	111686518,111691550,111693798,111694230,111699953,111702104,111703880,111705246,111706567,111707854,111713099,111714444,111718183,111722408,111723791,111727632,111738279,111741475,111746233,111748091,111756324,111758083,111758694,111775790,111780929,111783387	111686870,111692511,111693948,111694362,111700047,111702226,111703992,111705364,111706746,111707924,111713172,111714623,111718288,111722585,111723911,111728049,111738522,111741570,111746342,111748199,111756478,111758195,111758848,111775975,111781017,111783499	0.942308
ovary_female_adult_51_years	chr9	76956771	76956795	76956792	+	High_confidence	5	5	23	1.367798	4.186704	chr9	76956764	76956867	LINE|L2|L2	-	chr9	76956665	76990696	STRG.84151.3	+	76956665,76988172	76957448,76990696	0.739130
ovary_female_adult_51_years	chr4	3929795	3929811	3929810	-	High_confidence	3	3	7	0.416286	2.521641	chr4	3927854	3930775	LTR|ERV1|HERVH-int	+	chr4	3920795	3929716	STRG.37700.1	-	3920795,3924070,3929541	3921782,3924267,3929716	0.714286
ovary_female_adult_51_years	chr4_GL000008v2_random	170347	170352	170347	-	RAMPAGE_only	29	29	62	3.687107	4.405587	chr4_GL000008v2_random	170280	170685	LTR|ERV1|MER61C	+	chr4_GL000008v2_random	161986	178171	ANKRD20A12P|NR_046228.1	-	161986,163784,164602,175824,177526	162439,163998,164884,175974,178171	0.967742
ovary_female_adult_51_years	chr6	150857100	150857118	150857101	-	High_confidence	6	9	21	1.248859	3.784184	chr6	150856969	150857593	LTR|ERV1|LTR10E	-	chr6	150856383	150857027	STRG.63687.1	-	150856383	150857027	0.619048
ovary_female_adult_51_years	chr4	158173024	158173025	158173024	-	High_confidence	129	138	174	10.347688	6.442600	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.862069
ovary_female_adult_51_years	chr11	67848662	67848696	67848672	-	High_confidence	6	6	26	1.546206	4.293661	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67847366	67848626	STRG.97500.1	-	67847366,67848565	67847989,67848626	0.884615
ovary_female_adult_51_years	chr6	119727745	119727757	119727756	+	High_confidence	3	4	10	0.594695	2.846439	chr6	119721711	119728346	LINE|L1|L1PB3	-	chr6	119727713	119728661	STRG.61269.1	+	119727713	119728661	0.500000
ovary_female_adult_51_years	chr6	31174756	31174780	31174779	-	RAMPAGE_only	2	2	6	0.356817	2.584963	chr6	31174708	31174987	SINE|Alu|AluSz	+	chr6	31164600	31186404	STRG.57022.4	-	31164600,31165127,31165570,31165926,31177638	31164867,31165286,31165701,31175955,31186404	1.000000
ovary_female_adult_51_years	chr8	53523862	53523896	53523862	-	High_confidence	9	10	35	2.081432	4.629004	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.942857
ovary_female_adult_51_years	chr12	31119080	31119105	31119086	-	High_confidence	3	6	14	0.832573	3.546594	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.857143
ovary_female_adult_51_years	chr1	77169312	77169334	77169312	-	RAMPAGE_only	3	5	10	0.594695	2.646439	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77088989	77219426	PIGK|ENST00000370812.7	-	77088989,77122274,77154448,77161294,77161593,77163845,77166718,77169259,77206639,77210435,77219309	77092490,77122359,77154621,77161405,77161711,77163942,77166830,77169395,77206731,77210489,77219426	1.000000
ovary_female_adult_51_years	chrX	35890901	35890929	35890901	+	RAMPAGE_only	7	7	12	0.713634	3.095795	chrX	35890725	35891088	LTR|ERVL|LTR41	+	chrX	35919733	35990147	CFAP47|ENST00000297866.9	+	35919733,35926016,35941282,35948313,35951130,35951802,35953591,35955960,35966564,35967618,35970767,35971585,35971868,35975146,35975671,35989318	35920048,35926168,35941398,35948452,35951359,35951963,35953719,35956196,35966754,35967832,35970923,35971772,35971965,35975363,35975913,35990147	0.833333
ovary_female_adult_51_years	chr16	67183538	67183572	67183538	-	High_confidence	7	7	25	1.486737	3.849224	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.720000
ovary_female_adult_51_years	chr8	144853500	144853556	144853555	-	High_confidence	5	5	40	2.378779	5.003056	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	1.000000
ovary_female_adult_51_years	chr10	65570509	65570529	65570528	+	High_confidence	18	18	111	6.601111	6.133912	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570526	65780878	STRG.89562.2	+	65570526,65571424,65572934,65585484,65615635,65768392,65779541	65570759,65571579,65573056,65585802,65615761,65768462,65780878	0.864865
ovary_female_adult_51_years	chr16	760819	760925	760924	+	High_confidence	80	84	300	17.840842	6.604132	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	0.973333
ovary_female_adult_51_years	chr17	59839195	59839203	59839195	+	RAMPAGE_only	2	2	8	0.475756	2.521641	chr17	59838987	59839290	SINE|Alu|AluSq2	-	chr17	59837930	59842255	VMP1|ENST00000592790.1	+	59837930	59842255	0.875000
ovary_female_adult_51_years	chr2	121902487	121902498	121902489	+	High_confidence	4	7	12	0.713634	3.095795	chr2	121902488	121902606	LINE|L2|L2a	-	chr2	121902476	121944454	STRG.18638.1	+	121902476,121944333	121902989,121944454	0.500000
ovary_female_adult_51_years	chr6	49728372	49728553	49728372	-	RAMPAGE_only	10	10	120	7.136337	5.840815	chr6	49728072	49728367	LINE|L2|L2	-	chr6	49727383	49744414	CRISP3|ENST00000263045.8	-	49727383,49731162,49733194,49733702,49735503,49736390,49737324,49744330	49728857,49731251,49733292,49733848,49735591,49736507,49737398,49744414	0.983333
ovary_female_adult_51_years	chr13	52570267	52570324	52570267	+	RAMPAGE_only	8	8	40	2.378779	3.884830	chr13	52569964	52570306	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.800000
ovary_female_adult_51_years	chr5	142811161	142811218	142811181	+	RAMPAGE_only	4	5	26	1.546206	4.563856	chr5	142811121	142811214	SINE|MIR|MIR	+	chr5	142771118	143224097	ARHGAP26|ENST00000642734.1	+	142771118,142873399,142875109,142879373,142885297,142894237,142901934,142903539,142907703,142913198,142932046,143014079,143037195,143041815,143054438,143056027,143057641,143120987,143133966,143147230,143213996,143222357	142771375,142873495,142875171,142879445,142885399,142894348,142902039,142903669,142907804,142913293,142932125,143014116,143037261,143041890,143054526,143056086,143057747,143121147,143134105,143147381,143214088,143224097	0.500000
ovary_female_adult_51_years	chr22	39021127	39021156	39021127	+	High_confidence	9	9	29	1.724615	3.986188	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.931034
ovary_female_adult_51_years	chr19	41545191	41545192	41545191	+	RAMPAGE_only	36	36	36	2.140901	4.683542	chr19	41544577	41545607	LTR|ERVK|LTR5A	+	chr19	41549519	41550705	AC243960.1|ENST00000601116.5	+	41549519,41550137	41549552,41550705	0.555556
ovary_female_adult_51_years	chr7	17374741	17374742	17374741	+	High_confidence	4	4	7	0.416286	2.584963	chr7	17374638	17374768	DNA|hAT-Charlie|MER5B	+	chr7	17374866	17466664	KCCAT333|ENST00000419463.1	+	17374866,17448880,17450994,17466151	17375055,17448948,17451061,17466664	0.571429
ovary_female_adult_51_years	chr9	20658571	20658619	20658607	+	High_confidence	4	7	24	1.427267	4.001629	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.875000
ovary_female_adult_51_years	chr14	106845850	106845934	106845858	-	High_confidence	15	15	73	4.341272	5.303125	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106809919	106845923	STRG.116417.1	-	106809919,106845802	106810746,106845923	0.835616
ovary_female_adult_51_years	chr12	122064308	122064333	122064308	+	High_confidence	6	6	25	1.486737	4.403856	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122064356	122069083	STRG.107751.1	+	122064356,122068027,122068288	122064682,122068191,122069083	0.680000
ovary_female_adult_51_years	chr22	46575623	46575641	46575640	+	High_confidence	7	7	23	1.367798	4.262692	chr22	46575415	46575643	LINE|L2|L2c	-	chr22	46576011	46637936	GRAMD4|ENST00000447351.5	+	46576011,46626750,46637839	46576078,46626961,46637936	0.652174
ovary_female_adult_51_years	chr12	9065161	9065174	9065161	+	High_confidence	6	8	27	1.605676	4.209867	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.666667
ovary_female_adult_51_years	chr14	106203806	106203817	106203816	+	RAMPAGE_only	4	4	8	0.475756	2.521641	chr14	106197571	106206819	LTR|ERV1|HERVS71-int	-	chr14	106196035	106210141	STRG.116376.4	+	106196035,106199202,106202416,106205075,106206077	106197002,106199354,106202463,106205151,106210141	0.500000
ovary_female_adult_51_years	chr20	37297344	37297345	37297344	+	High_confidence	9	9	9	0.535225	2.725481	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
ovary_female_adult_51_years	chr16	20674497	20674498	20674497	+	High_confidence	1067	1078	1176	69.936100	6.058713	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.856293
ovary_female_adult_51_years	chr12	122064375	122064376	122064375	+	High_confidence	19	19	20	1.189389	3.826875	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122064356	122069083	STRG.107751.1	+	122064356,122068027,122068288	122064682,122068191,122069083	0.750000
ovary_female_adult_51_years	chr19	52616767	52616807	52616767	-	RAMPAGE_only	3	3	10	0.594695	2.921928	chr19	52616561	52616863	SINE|Alu|AluSp	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	1.000000
ovary_female_adult_51_years	chr2	73775328	73775329	73775328	-	RAMPAGE_only	10	10	13	0.773103	3.584963	chr2	73775235	73775361	LINE|L2|L2a	+	chr2	73767418	73780121	STRG.16411.4	-	73767418,73773799,73774912,73778300	73769325,73773923,73775044,73780121	0.538462
ovary_female_adult_51_years	chr17	6854178	6854197	6854196	+	High_confidence	3	3	8	0.475756	2.521641	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853940	6895482	ALOX12P2|ENST00000574271.5	+	6853940,6854213,6892002,6894317,6894883,6895095,6895342	6854060,6854435,6892075,6894519,6895006,6895199,6895482	0.750000
ovary_female_adult_51_years	chr14	106202228	106202241	106202240	+	RAMPAGE_only	4	4	8	0.475756	2.521641	chr14	106197571	106206819	LTR|ERV1|HERVS71-int	-	chr14	106196035	106210141	STRG.116376.4	+	106196035,106199202,106202416,106205075,106206077	106197002,106199354,106202463,106205151,106210141	0.750000
ovary_female_adult_51_years	chr2	231403896	231403897	231403896	+	RAMPAGE_only	117	122	145	8.623074	6.487532	chr2	231401206	231405702	LTR|ERV1|HERVE-int	+	chr2	231395542	231408801	STRG.24577.1	+	231395542,231397730,231406023	231395814,231404514,231408801	0.855172
ovary_female_adult_51_years	chr7	103353924	103353957	103353956	+	High_confidence	3	3	6	0.356817	2.584963	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.833333
ovary_female_adult_51_years	chr6	31186398	31186399	31186398	-	High_confidence	1553	1649	1849	109.959055	7.600108	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31164600	31186404	STRG.57022.4	-	31164600,31165127,31165570,31165926,31177638	31164867,31165286,31165701,31175955,31186404	0.977285
ovary_female_adult_51_years	chr2	201115946	201116008	201115946	+	High_confidence	3	3	17	1.010981	3.125000	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.647059
ovary_female_adult_51_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	58	60	60	3.568168	4.549082	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.966667
ovary_female_adult_51_years	chr16	87860676	87860697	87860676	-	RAMPAGE_only	5	5	10	0.594695	2.721928	chr16	87860400	87860678	LTR|ERV1|MER4B	+	chr16	87830022	87863639	SLC7A5|ENST00000565644.5	-	87830022,87834413,87836497,87837844,87838713,87839701,87840428,87841049,87851723,87863589	87833025,87834591,87836647,87837941,87838817,87839825,87840473,87841155,87851849,87863639	0.800000
ovary_female_adult_51_years	chr2	3536845	3536873	3536862	-	High_confidence	7	7	43	2.557187	4.753056	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.883721
ovary_female_adult_51_years	chr5	109383412	109383463	109383462	-	High_confidence	8	8	21	1.248859	3.984184	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.952381
ovary_female_adult_51_years	chrX	140966564	140966565	140966564	+	RAMPAGE_only	11	11	13	0.773103	3.022055	chrX	140966452	140966895	LTR|ERV1|MER39B	-	chrX	141002590	141003706	SPANXB1|ENST00000449283.1	+	141002590,141003430	141002783,141003706	0.615385
ovary_female_adult_51_years	chr7	120780643	120780682	120780679	-	High_confidence	28	28	85	5.054905	5.294236	chr7	120779457	120782483	LTR|ERV1|HERVH-int	-	chr7	120736514	120780665	STRG.71600.2	-	120736514,120752323,120780346	120752018,120752432,120780665	0.788235
ovary_female_adult_51_years	chr10	6737334	6737373	6737341	+	High_confidence	5	5	25	1.486737	4.243856	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.920000
ovary_female_adult_51_years	chr1	53428075	53428104	53428075	-	RAMPAGE_only	6	8	22	1.308328	4.201841	chr1	53427830	53428332	LTR|ERV1|HERVH-int	+	chr1	53413162	53417666	SLC25A3P1|ENST00000566461.1	-	53413162,53415400,53417527	53413268,53415524,53417666	0.590909
ovary_female_adult_51_years	chr14	51599923	51600012	51599923	-	High_confidence	23	23	119	7.076867	5.805333	chr14	51599913	51599958	SINE|MIR|MIR3	+	chr14	51546628	51599920	FRMD6-AS2|ENST00000557625.1	-	51546628,51547706,51584165,51599826	51546820,51547883,51584283,51599920	0.655462
ovary_female_adult_51_years	chr6	28984748	28984759	28984758	+	RAMPAGE_only	5	5	10	0.594695	2.921928	chr6	28984677	28984982	SINE|Alu|AluY	-	chr6	28986202	28987484	HCG15|ENST00000438190.1	+	28986202,28986312,28986676	28986232,28986506,28987484	0.500000
ovary_female_adult_51_years	chr3	197913233	197913296	197913295	-	High_confidence	209	223	970	57.685389	7.186960	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.951546
ovary_female_adult_51_years	chr10	6737490	6737492	6737491	+	High_confidence	11	19	20	1.189389	3.826875	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.950000
ovary_female_adult_51_years	chr5	96934230	96934231	96934230	+	RAMPAGE_only	4	6	6	0.356817	2.584963	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	1.000000
ovary_female_adult_51_years	chr12	7502480	7502518	7502492	-	High_confidence	2	2	14	0.832573	3.546594	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.928571
ovary_female_adult_51_years	chr18	9117559	9117565	9117559	+	RAMPAGE_only	3	3	7	0.416286	2.584963	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9104081	9134345	NDUFV2|ENST00000400033.1	+	9104081,9104943,9117837,9119325,9119473,9122512,9124873,9126830,9134185	9104225,9104979,9117903,9119388,9119590,9122681,9124983,9126907,9134345	0.714286
ovary_female_adult_51_years	chr12	62556469	62556498	62556479	+	RAMPAGE_only	2	2	9	0.535225	2.500000	chr12	62556332	62556757	LINE|L2|L2b	-	chr12	62531293	62557796	STRG.104991.8	+	62531293,62534844,62535524,62537150,62537601,62538251,62538414,62543096,62544897,62546896,62549667,62552880,62555993	62532670,62534939,62535709,62537263,62538176,62538325,62538505,62543198,62545008,62547072,62549830,62553174,62557796	0.888889
ovary_female_adult_51_years	chr1	238486008	238486043	238486034	-	High_confidence	9	11	40	2.378779	4.531687	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.700000
ovary_female_adult_51_years	chr8	102929828	102929831	102929830	+	High_confidence	7	13	18	1.070451	3.794653	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.777778
ovary_female_adult_51_years	chr11	77571158	77571191	77571170	+	High_confidence	16	17	43	2.557187	4.784184	chr11	77570921	77571455	LTR|ERV1|LTR61	+	chr11	77571088	77575662	LOC646029|NR_130930.1	+	77571088,77571514,77574210	77571310,77571685,77575662	0.906977
ovary_female_adult_51_years	chr3	183557117	183557147	183557133	-	High_confidence	27	27	78	4.638619	4.915884	chr3	183556736	183557247	DNA|MULE-MuDR|Ricksha_c	-	chr3	183487551	183557145	STRG.36554.2	-	183487551,183494078,183499589,183508058,183527844,183555360	183492707,183494281,183499827,183508508,183528010,183557145	0.974359
ovary_female_adult_51_years	chr12	50767070	50767071	50767070	+	RAMPAGE_only	7	7	7	0.416286	2.807355	chr12	50766664	50767224	LTR|ERV1|MER41-int	+	chr12	50764508	50814368	ATF1|ENST00000552487.1	+	50764508,50780139,50795908,50809455,50814009,50814279	50764647,50780238,50796009,50809589,50814192,50814368	1.000000
ovary_female_adult_51_years	chr3	135965673	135965749	135965748	+	High_confidence	19	20	192	11.418139	6.288261	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.973958
ovary_female_adult_51_years	chr1	43120042	43120043	43120042	+	High_confidence	13	13	18	1.070451	2.863826	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43120120	43120597	STRG.2096.1	+	43120120	43120597	0.833333
ovary_female_adult_51_years	chr20	59827961	59827986	59827961	+	RAMPAGE_only	2	2	7	0.416286	2.584963	chr20	59827920	59828527	DNA|hAT-Charlie|MER20B	+	chr20	59835852	59847711	PHACTR3|ENST00000492611.5	+	59835852,59840368,59841394,59845188,59847114	59836560,59840430,59841535,59845265,59847711	0.857143
ovary_female_adult_51_years	chr19	11196107	11196132	11196131	-	High_confidence	16	16	41	2.438248	3.931687	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.926829
ovary_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	229	229	230	13.677979	4.268720	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.969565
ovary_female_adult_51_years	chr12	8681515	8681600	8681599	+	High_confidence	73	77	113	6.720050	6.094169	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.584071
ovary_female_adult_51_years	chr21	17676701	17676702	17676701	-	High_confidence	58	59	64	3.806046	4.333172	chr21	17676549	17677516	LTR|ERVK|LTR13A	-	chr21	17659490	17676684	STRG.140316.1	-	17659490,17675049,17676477	17659669,17675162,17676684	0.796875
ovary_female_adult_51_years	chr9	128921399	128921400	128921399	+	High_confidence	20	20	26	1.546206	4.103910	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.923077
ovary_female_adult_51_years	chr7	46969644	46969662	46969661	+	High_confidence	10	17	30	1.784084	4.137538	chr7	46969489	46969705	LINE|L2|L2c	-	chr7	46969715	47027481	AC004870.2|ENST00000423781.1	+	46969715,46972276,47026136,47027192	46969913,46972385,47026246,47027481	0.800000
ovary_female_adult_51_years	chr14	68882879	68882880	68882879	-	High_confidence	10	10	13	0.773103	2.855389	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.923077
ovary_female_adult_51_years	chr5	139364683	139364741	139364740	+	RAMPAGE_only	2	2	8	0.475756	2.750000	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.750000
ovary_female_adult_51_years	chr14	58054206	58054219	58054206	-	RAMPAGE_only	9	9	22	1.308328	4.106603	chr14	58053997	58054183	SINE|MIR|MIR1_Amn	-	chr14	58000760	58152213	ARMH4|ENST00000267485.7	-	58000760,58005047,58012118,58096723,58131511,58133089,58137989,58152074	58004804,58005182,58012150,58096981,58131721,58133341,58139414,58152213	0.818182
ovary_female_adult_51_years	chr11	77571552	77571553	77571552	+	High_confidence	9	10	12	0.713634	3.022055	chr11	77571455	77571917	LTR|ERV1|HERV3-int	+	chr11	77571088	77575662	LOC646029|NR_130930.1	+	77571088,77571514,77574210	77571310,77571685,77575662	1.000000
ovary_female_adult_51_years	chr19	49086520	49086547	49086546	+	High_confidence	6	6	15	0.892042	3.640224	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.666667
ovary_female_adult_51_years	chr9	39810033	39810034	39810033	-	High_confidence	33	33	42	2.497718	4.473048	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807380	39810058	GLIDR|ENST00000618092.2	-	39807380,39809730	39809633,39810058	0.547619
ovary_female_adult_51_years	chr14	21360422	21360442	21360422	-	RAMPAGE_only	2	2	8	0.475756	2.807355	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351478	21358402	SUPT16H|ENST00000557394.5	-	21351478,21353487,21353702,21354410,21357196,21357926	21352818,21353565,21353832,21354540,21357366,21358402	0.625000
ovary_female_adult_51_years	chr4	185620090	185620110	185620090	-	RAMPAGE_only	2	2	10	0.594695	2.947703	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.900000
ovary_female_adult_51_years	chr7	101217578	101217595	101217594	-	High_confidence	2	2	8	0.475756	2.521641	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.750000
ovary_female_adult_51_years	chr4	95000465	95000481	95000465	+	RAMPAGE_only	10	10	22	1.308328	4.186704	chr4	95000399	95000534	SINE|Alu|AluSc	+	chr4	94996231	95154673	BMPR1B|ENST00000512312.5	+	94996231,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547	94996384,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95154673	0.545455
ovary_female_adult_51_years	chr15	74174554	74174572	74174571	+	High_confidence	204	240	592	35.205928	6.074142	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	0.969595
ovary_female_adult_51_years	chr12	10553364	10553365	10553364	+	High_confidence	16	16	17	1.010981	3.250000	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.764706
ovary_female_adult_51_years	chr8	80485592	80485635	80485592	+	High_confidence	31	31	62	3.687107	5.360976	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.516129
ovary_female_adult_51_years	chr11	65427916	65428515	65428512	+	RAMPAGE_only	26	26	787	46.802475	7.086425	chr11	65428531	65428593	DNA|hAT-Tip100|MamRep4096	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
ovary_female_adult_51_years	chr7	2242922	2242923	2242922	+	High_confidence	7	7	7	0.416286	2.521641	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
ovary_female_adult_51_years	chr22	23538561	23538573	23538572	+	RAMPAGE_only	16	16	26	1.546206	3.779471	chr22	23537739	23538729	LTR|ERVK|LTR5B	+	chr22	23536880	23539480	PCAT14|ENST00000629869.1	+	23536880,23538760	23537136,23539480	0.846154
ovary_female_adult_51_years	chr22	23538295	23538296	23538295	+	High_confidence	7	7	10	0.594695	2.921928	chr22	23537739	23538729	LTR|ERVK|LTR5B	+	chr22	23538101	23547306	PCAT14|NR_109832.1	+	23538101,23538760,23544227,23546485	23538324,23538838,23544306,23547306	0.500000
ovary_female_adult_51_years	chr6	130978738	130978739	130978738	-	High_confidence	12	14	17	1.010981	3.500000	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.588235
ovary_female_adult_51_years	chr10	67387511	67387543	67387542	-	High_confidence	3	3	8	0.475756	2.500000	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67219475	67387055	STRG.89737.2	-	67219475,67386985	67219870,67387055	0.750000
ovary_female_adult_51_years	chr19	9140393	9140428	9140393	+	High_confidence	17	17	86	5.114375	5.637745	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.581395
ovary_female_adult_51_years	chr8	12530940	12530941	12530940	+	RAMPAGE_only	12	12	13	0.773103	3.188722	chr8	12530906	12531004	LINE|L2|L2b	+	chr8	12522048	12568060	STRG.74418.4	+	12522048,12530942,12565885	12522846,12531031,12568060	0.692308
ovary_female_adult_51_years	chr5	117454949	117454978	117454949	+	High_confidence	5	5	10	0.594695	2.721928	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.500000
ovary_female_adult_51_years	chr20	44532569	44532570	44532569	+	High_confidence	14	14	16	0.951512	3.500000	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.750000
ovary_female_adult_51_years	chr6	43013392	43013393	43013392	-	High_confidence	26	26	37	2.200370	4.756619	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
ovary_female_adult_51_years	chr21	36005313	36005320	36005319	+	High_confidence	6	6	10	0.594695	2.947703	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.900000
ovary_female_adult_51_years	chr4	128428000	128428006	128428005	+	High_confidence	8	8	14	0.832573	3.664498	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.642857
ovary_female_adult_51_years	chr2	48479384	48479385	48479384	+	RAMPAGE_only	6	6	8	0.475756	2.807355	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48478171	48515383	STRG.15119.4	+	48478171,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515383	0.875000
ovary_female_adult_51_years	chr3	180870516	180870552	180870518	-	High_confidence	24	32	51	3.032943	5.133018	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180781093	180870507	STRG.36376.1	-	180781093,180847506,180870046	180782124,180847624,180870507	0.862745
ovary_female_adult_51_years	chr1	15526456	15526460	15526456	-	High_confidence	15	15	25	1.486737	4.183465	chr1	15526347	15526477	SINE|MIR|MIR3	+	chr1	15526105	15526433	STRG.671.1	-	15526105	15526433	0.800000
ovary_female_adult_51_years	chr4	102431228	102431248	102431241	-	High_confidence	6	6	29	1.724615	3.995238	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.965517
ovary_female_adult_51_years	chr19	1170069	1170116	1170110	+	High_confidence	7	7	23	1.367798	4.088779	chr19	1170017	1170122	LINE|L1|L1MB7	-	chr19	1170360	1170739	STRG.133464.1	+	1170360	1170739	0.652174
ovary_female_adult_51_years	chr2	186602121	186602128	186602121	+	RAMPAGE_only	5	5	11	0.654164	2.921928	chr2	186602116	186602175	LINE|RTE-BovB|MamRTE1	-	chr2	186590079	186680897	STRG.21976.2	+	186590079,186602020,186622338,186625472,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186590523,186602151,186622430,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186680897	0.909091
ovary_female_adult_53_years	chr9	72363415	72363646	72363564	-	RAMPAGE_only	13	13	160	10.405810	5.670314	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72355832	72365197	STRG.70015.8	-	72355832,72359417,72360109,72360627,72364695	72357056,72359521,72360221,72363606,72365197	0.993750
ovary_female_adult_53_years	chr8	2726956	2726963	2726956	+	High_confidence	4	5	9	0.585327	2.725481	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.555556
ovary_female_adult_53_years	chr20	18794063	18794086	18794085	+	High_confidence	27	27	84	5.463050	5.393899	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.976190
ovary_female_adult_53_years	chr17	20921012	20921028	20921027	+	High_confidence	8	8	19	1.235690	3.826875	chr17	20920944	20921033	LINE|L2|L2a	+	chr17	20921044	20930046	CCDC144NL-AS1|ENST00000443508.6	+	20921044,20924358,20929430	20921169,20924833,20930046	0.894737
ovary_female_adult_53_years	chr14	77737019	77737047	77737019	-	High_confidence	3	3	8	0.520290	2.500000	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.875000
ovary_female_adult_53_years	chr17	69196620	69196644	69196620	-	RAMPAGE_only	5	5	17	1.105617	3.454822	chr17	69195559	69197005	Retroposon|SVA|SVA_B	-	chr17	69190860	69200215	STRG.111515.47	-	69190860,69194384	69193612,69200215	1.000000
ovary_female_adult_53_years	chr9	95831779	95831836	95831779	-	RAMPAGE_only	7	8	34	2.211235	4.476064	chr9	95831563	95831844	LTR|ERVL|LTR16D	+	chr9	95806087	95875977	LINC00476|NR_023390.1	-	95806087,95850226,95875864	95813922,95850292,95875977	0.500000
ovary_female_adult_53_years	chrX	74000211	74000239	74000238	+	RAMPAGE_only	3	3	9	0.585327	2.947703	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.888889
ovary_female_adult_53_years	chr14	63993945	63993965	63993964	+	RAMPAGE_only	4	5	12	0.780436	3.418296	chr14	63994011	63994107	LTR|ERVL|LTR33A_	+	chr14	63909097	64225564	SYNE2|ENST00000554584.5	+	63909097,63940613,63941694,63941884,63942050,63949824,63954718,63961524,63963898,63967708,63976562,63977904,63978851,63980653,63980985,63982629,63983736,63986455,63990410,63990941,63993834,63995043,63996946,63997300,63998218,63998913,64000561,64001933,64002719,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024256,64024911,64025129,64026578,64027483,64029894,64031015,64034493,64047999,64049610,64051556,64055943,64062750,64065431,64070644,64073967,64075944,64078465,64080455,64081442,64087670,64089573,64090865,64093348,64097948,64098746,64101985,64107490,64113340,64119426,64120926,64122011,64125128,64126326,64126597,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64167232,64167494,64168876,64170227,64173898,64174943,64177357,64188549,64188859,64190070,64190601,64190915,64202186,64202800,64208757,64209427,64209950,64211960,64212810,64214193,64216247,64219207,64220436,64221575,64223188,64224460,64224982,64225318	63909227,63940675,63941790,63941962,63942143,63950006,63954915,63961625,63964000,63967846,63976727,63978017,63979014,63980732,63981173,63982794,63983886,63986617,63990569,63991115,63993969,63995202,63997158,63997391,63998328,63999040,64000719,64002081,64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64022863,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64034592,64048155,64049876,64053657,64056266,64062895,64065650,64070910,64074136,64076100,64078606,64080638,64081580,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64125210,64126479,64126807,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64167387,64167639,64168971,64170321,64174009,64175138,64177483,64188708,64189009,64190237,64190614,64191120,64202265,64202963,64208945,64209578,64210124,64212098,64212954,64214470,64216424,64219410,64220637,64221704,64223380,64224547,64225045,64225564	1.000000
ovary_female_adult_53_years	chr1	39382082	39382132	39382131	+	RAMPAGE_only	6	7	30	1.951089	4.240224	chr1	39382176	39382271	SINE|MIR|MIRb	+	chr1	39358411	39389024	STRG.1876.12	+	39358411,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186	39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39389024	1.000000
ovary_female_adult_53_years	chr11	65431031	65431043	65431031	+	RAMPAGE_only	2	3	7	0.455254	2.584963	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.857143
ovary_female_adult_53_years	chr20	37297344	37297345	37297344	+	High_confidence	6	6	8	0.520290	3.000000	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.875000
ovary_female_adult_53_years	chr12	31121337	31121347	31121337	-	RAMPAGE_only	10	13	24	1.560871	2.925523	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31112891	31119267	STRG.86675.1	-	31112891,31114395,31114836,31116356,31117419,31118962	31113083,31114464,31114927,31116469,31117480,31119267	0.958333
ovary_female_adult_53_years	chr13	24968471	24968477	24968471	-	High_confidence	9	9	19	1.235690	3.572431	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24933005	24968453	TPTE2P1|ENST00000649209.1	-	24933005,24937576,24940506,24941986,24942931,24951396,24951594,24961748,24967391,24968205	24934663,24937770,24940785,24942108,24943021,24951488,24951770,24961849,24967453,24968453	0.526316
ovary_female_adult_53_years	chr12	122064308	122064376	122064332	+	High_confidence	16	16	67	4.357433	5.549216	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122064227	122068558	STRG.91536.2	+	122064227,122068027,122068288	122064682,122068191,122068558	0.776119
ovary_female_adult_53_years	chr11	65431833	65431890	65431861	+	RAMPAGE_only	9	9	34	2.211235	4.294246	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.970588
ovary_female_adult_53_years	chr1	196404204	196404229	196404228	-	RAMPAGE_only	3	3	10	0.650363	2.947703	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196256768	196430361	STRG.8184.6	-	196256768,196280859,196282272,196285656,196305233,196315891,196319483,196331155,196333846,196340340,196342078,196373139,196398562,196423049,196425851,196428104,196429576	196258494,196280988,196282356,196285758,196305345,196316026,196326889,196331261,196334060,196340570,196342249,196373248,196398671,196423113,196425988,196428269,196430361	0.500000
ovary_female_adult_53_years	chr5	73078286	73078288	73078286	+	RAMPAGE_only	3	6	7	0.455254	2.584963	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.857143
ovary_female_adult_53_years	chr10	65570519	65570537	65570521	+	High_confidence	11	17	43	2.796561	4.460903	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570524	65768808	STRG.74683.1	+	65570524,65571424,65572934,65585484,65615635,65689502,65768392	65570759,65571579,65573056,65585802,65615761,65689611,65768808	0.860465
ovary_female_adult_53_years	chr14	50756882	50756904	50756903	-	RAMPAGE_only	4	5	11	0.715399	3.277613	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
ovary_female_adult_53_years	chr6	131015844	131015869	131015844	-	High_confidence	9	11	30	1.951089	4.349192	chr6	131015722	131015818	LINE|L2|L2a	-	chr6	130956024	131015842	EPB41L2|ENST00000526983.1	-	130956024,131015280,131015818	130956499,131015333,131015842	0.666667
ovary_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	185	201	479	31.152393	6.002684	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.933194
ovary_female_adult_53_years	chr8	32927967	32927979	32927976	+	RAMPAGE_only	17	18	43	2.796561	4.786503	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.906977
ovary_female_adult_53_years	chr17	41871698	41871748	41871745	-	RAMPAGE_only	3	3	14	0.910508	3.238901	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.785714
ovary_female_adult_53_years	chr12	12927623	12927654	12927623	+	High_confidence	5	5	11	0.715399	3.095795	chr12	12927560	12927653	LTR|ERV1|MER50	+	chr12	12927725	12980307	GPRC5D-AS1|ENST00000545914.5	+	12927725,12978940,12979523,12979999	12927803,12979021,12979622,12980307	0.545455
ovary_female_adult_53_years	chr11	65431244	65431269	65431244	+	RAMPAGE_only	13	14	29	1.886053	3.952303	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
ovary_female_adult_53_years	chr19	20752442	20752443	20752442	-	RAMPAGE_only	8	9	10	0.650363	3.121928	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746967	20755201	STRG.116230.1	-	20746967,20750915,20751824,20754871	20750387,20751157,20752667,20755201	0.900000
ovary_female_adult_53_years	chr3	11604396	11604406	11604405	-	High_confidence	4	7	14	0.910508	3.392747	chr3	11604225	11604413	SINE|MIR|MIR3	-	chr3	11556066	11604581	VGLL4|NM_001284391.1	-	11556066,11559331,11564796,11601832,11604323	11558827,11559455,11565019,11602022,11604581	0.928571
ovary_female_adult_53_years	chr6	85972315	85972352	85972351	+	High_confidence	53	75	139	9.040047	5.613525	chr6	85972332	85972650	LTR|ERV1|LTR12F	-	chr6	85972309	86116892	STRG.51342.3	+	85972309,85983368,85984013,85993379,85993824,85998163,86016168,86046296,86067592,86116753	85972406,85983608,85984318,85993560,85994053,85998299,86016250,86046418,86067684,86116892	0.863309
ovary_female_adult_53_years	chr9	88065525	88065560	88065559	-	High_confidence	8	8	21	1.365763	4.297079	chr9	88065274	88065849	LTR|ERVL|LTR66	-	chr9	88039273	88065642	STRG.70480.8	-	88039273,88044099,88065456	88040111,88044337,88065642	0.904762
ovary_female_adult_53_years	chr3	188947170	188947237	188947224	+	High_confidence	4	4	15	0.975545	3.640224	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.733333
ovary_female_adult_53_years	chr6	130978732	130978739	130978738	-	High_confidence	3	4	7	0.455254	2.584963	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.714286
ovary_female_adult_53_years	chr2	200889279	200889294	200889293	-	High_confidence	9	9	25	1.625908	4.133661	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889276	PPIL3|ENST00000465823.5	-	200870955,200876918,200881420,200885697,200887612,200888955	200871521,200877037,200881488,200885772,200887685,200889276	0.840000
ovary_female_adult_53_years	chr11	123061128	123061322	123061256	-	High_confidence	28	30	193	12.552008	5.597149	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.989637
ovary_female_adult_53_years	chr4	87134134	87134138	87134137	+	RAMPAGE_only	3	4	7	0.455254	2.584963	chr4	87134085	87134155	LINE|L2|L2a	+	chr4	87007395	87135701	AFF1|ENST00000544085.5	+	87007395,87046165,87046694,87084119,87089983,87091792,87094914,87105627,87105807,87108158,87114366,87125036,87126098,87126235,87126270,87127025,87127642,87131082,87131792,87132270,87134470,87135579,87135600	87007424,87046286,87047594,87084164,87090070,87091829,87094969,87105682,87105845,87108315,87115299,87125143,87126234,87126268,87126336,87127117,87127703,87131219,87131864,87132408,87134694,87135599,87135701	0.714286
ovary_female_adult_53_years	chr4	152412488	152412529	152412528	-	High_confidence	6	7	23	1.495835	3.823068	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.956522
ovary_female_adult_53_years	chr22	23527443	23527455	23527443	+	High_confidence	11	11	20	1.300726	4.121928	chr22	23527401	23527785	LINE|L2|L2b	-	chr22	23527458	23539480	STRG.123599.1	+	23527458,23536971,23538760	23527564,23537136,23539480	0.850000
ovary_female_adult_53_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	62	62	62	4.032251	4.956224	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.967742
ovary_female_adult_53_years	chr2	11534092	11534093	11534092	+	High_confidence	77	77	98	6.373558	6.090069	chr2	11533857	11534477	DNA|TcMar-Tigger|Tigger9b	-	chr2	11534115	11642786	GREB1|NM_014668.3	+	11534115,11556453,11562462,11566479,11576352,11578296,11580703,11585160,11585761,11588745,11592775,11595250,11596110,11597780,11598679,11600799,11602405,11610687,11612494,11615090,11616630,11618287,11620904,11625153,11626961,11629947,11631908,11632888,11634130,11635269,11637715,11638670,11640290	11534254,11556771,11562582,11566656,11576535,11578431,11580832,11585274,11585905,11588931,11593126,11595379,11596239,11597978,11598860,11600995,11602542,11611027,11612610,11615290,11616720,11618919,11621007,11625312,11627104,11630109,11632113,11633063,11634349,11635405,11637916,11638809,11642786	0.510204
ovary_female_adult_53_years	chr1	39026130	39026136	39026130	+	High_confidence	5	5	11	0.715399	3.321928	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.818182
ovary_female_adult_53_years	chr1	54277466	54277604	54277603	-	High_confidence	27	27	90	5.853268	5.597083	chr1	54277464	54277668	SINE|MIR|MIR1_Amn	+	chr1	54243236	54277715	STRG.2853.10	-	54243236,54251615,54251793,54277188	54243299,54251692,54257186,54277715	0.766667
ovary_female_adult_53_years	chr3	56321521	56321538	56321537	-	RAMPAGE_only	7	8	14	0.910508	3.521641	chr3	56321414	56321840	LTR|ERV1|MER57F	-	chr3	55510775	56468337	ERC2|ENST00000612797.4	-	55510775,55606779,55683793,55699377,55734770,55888388,55950424,55985976,55992056,56007180,56010448,56018893,56080816,56139508,56148976,56173445,56296018,56434350,56468247	55511276,55606966,55683859,55699512,55734918,55888549,55950560,55985988,55992250,56007321,56010589,56019031,56080984,56139676,56149132,56173520,56296435,56435147,56468337	0.928571
ovary_female_adult_53_years	chr7	122074881	122074922	122074894	-	RAMPAGE_only	4	4	18	1.170654	3.410417	chr7	122074822	122074849	LINE|L1|L1MB8	-	chr7	122073543	122144290	AASS|NM_005763.3	-	122073543,122077837,122078861,122079596,122081499,122086011,122091702,122092842,122093047,122098449,122098744,122101370,122101620,122113117,122113597,122115073,122116632,122116878,122118306,122118562,122126374,122129360,122133516,122144160	122076607,122078014,122078950,122079712,122081595,122086179,122091843,122092951,122093158,122098576,122098866,122101438,122101680,122113229,122113720,122115222,122116760,122116957,122118453,122118630,122126459,122129537,122133741,122144290	0.944444
ovary_female_adult_53_years	chr14	88627749	88627805	88627804	-	High_confidence	5	6	15	0.975545	3.506891	chr14	88627710	88627772	DNA|hAT-Ac|OldhAT1	-	chr14	88621209	88626941	EML5|ENST00000553320.5	-	88621209,88624969,88626837	88621301,88625127,88626941	0.600000
ovary_female_adult_53_years	chr12	27716415	27716434	27716433	+	RAMPAGE_only	3	3	9	0.585327	2.500000	chr12	27716483	27716564	LINE|L2|L2	+	chr12	27710886	27737608	MRPS35|ENST00000542199.1	+	27710886,27714779,27716290,27719807,27724046,27725576,27735446,27737538	27710955,27714820,27716458,27719868,27724186,27725667,27735556,27737608	0.888889
ovary_female_adult_53_years	chrX	5726222	5726242	5726241	-	High_confidence	2	3	7	0.455254	2.584963	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.571429
ovary_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	76	77	77	5.007796	5.035573	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.909091
ovary_female_adult_53_years	chr3	134485403	134485416	134485403	-	High_confidence	4	4	10	0.650363	2.947703	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.900000
ovary_female_adult_53_years	chr8	30812383	30812454	30812453	-	High_confidence	7	7	53	3.446924	4.980569	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.981132
ovary_female_adult_53_years	chr9	13386132	13386133	13386132	+	RAMPAGE_only	11	11	13	0.845472	2.873141	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.923077
ovary_female_adult_53_years	chr11	18707030	18707031	18707030	-	High_confidence	5	5	7	0.455254	2.521641	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18705417	18706129	IGSF22|ENST00000510673.1	-	18705417,18705816	18705617,18706129	0.571429
ovary_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	10	10	10	0.650363	2.921928	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
ovary_female_adult_53_years	chr18	71578935	71578956	71578955	-	High_confidence	92	95	222	14.438061	6.153526	chr18	71578735	71579218	LTR|ERVL|LTR66	-	chr18	71519961	71578956	LINC01541|ENST00000568095.5	-	71519961,71521988,71527776,71531622,71534213,71548598,71578806	71521082,71523256,71527967,71531816,71534296,71548696,71578956	0.909910
ovary_female_adult_53_years	chr1	166850123	166850125	166850123	+	RAMPAGE_only	8	16	18	1.170654	3.852169	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.944444
ovary_female_adult_53_years	chr14	77076158	77076194	77076193	-	High_confidence	26	29	98	6.373558	5.934662	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77073649	77076303	STRG.98173.3	-	77073649,77076104	77074598,77076303	0.755102
ovary_female_adult_53_years	chr1	150457322	150457395	150457322	+	RAMPAGE_only	6	6	34	2.211235	4.160705	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150408296	150473556	STRG.6384.2	+	150408296,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150409052,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	1.000000
ovary_female_adult_53_years	chr18	36807856	36807890	36807856	-	High_confidence	3	3	9	0.585327	2.725481	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.888889
ovary_female_adult_53_years	chr2	105375510	105375541	105375540	+	RAMPAGE_only	36	39	81	5.267941	5.236769	chr2	105375421	105375619	SINE|Alu|AluSx	+	chr2	105363037	105378839	AC108058.1|ENST00000457290.2	+	105363037,105375867,105377717	105363077,105376749,105378839	0.975309
ovary_female_adult_53_years	chr12	32601284	32601285	32601284	+	RAMPAGE_only	7	7	10	0.650363	3.169925	chr12	32601190	32601318	SINE|MIR|MIRb	-	chr12	32582378	32644751	FGD4|ENST00000494977.1	+	32582378,32598496,32600409,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624658,32624975,32625653,32633548,32637649,32638654,32640275,32642760,32644593	32582467,32598586,32600509,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32624751,32625068,32625779,32633689,32637855,32638795,32640453,32642842,32644751	0.800000
ovary_female_adult_53_years	chr19	15829094	15829095	15829094	+	High_confidence	427	435	452	29.396412	6.667730	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	0.610619
ovary_female_adult_53_years	chr1	196715617	196715724	196715651	+	RAMPAGE_only	8	8	107	6.958885	5.826516	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.878505
ovary_female_adult_53_years	chr9	2523113	2523153	2523113	-	RAMPAGE_only	3	3	16	1.040581	2.739572	chr9	2522902	2523149	SINE|MIR|MIRb	-	chr9	2503279	2522019	VLDLR-AS1|ENST00000447278.1	-	2503279,2506358,2521902	2503403,2506540,2522019	0.937500
ovary_female_adult_53_years	chr19	20611504	20611523	20611504	+	High_confidence	59	59	160	10.405810	5.209268	chr19	20611050	20611625	LTR|ERV1|LTR61	+	chr19	20611558	20615389	AC010636.1|ENST00000598116.1	+	20611558,20615058	20611855,20615389	0.781250
ovary_female_adult_53_years	chr14	100929920	100929921	100929920	+	RAMPAGE_only	14	19	19	1.235690	3.932138	chr14	100929864	100929989	LINE|L1|L1ME5	+	chr14	100894888	100947076	STRG.99022.35	+	100894888,100897592,100898956,100906097,100906935,100910232,100916678,100931913,100938879,100940364,100942761,100944808,100947033	100895039,100897732,100899085,100906163,100907132,100916658,100931545,100937488,100938956,100940450,100942838,100944925,100947076	1.000000
ovary_female_adult_53_years	chr1	54243248	54243287	54243248	-	RAMPAGE_only	3	4	16	1.040581	3.750000	chr1	54243091	54243229	SINE|MIR|MIR3	-	chr1	54226516	54228834	SSBP3|ENST00000528930.5	-	54226516,54228254,54228448,54228747	54227160,54228356,54228477,54228834	0.625000
ovary_female_adult_53_years	chr5	34244813	34244824	34244815	-	High_confidence	7	14	22	1.430799	3.621928	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34019704	34245191	STRG.40738.1	-	34019704,34023908,34028753,34033303,34035646,34051881,34175444,34175821,34179012,34182679,34218294,34244615	34020742,34024008,34028883,34033458,34035758,34052110,34175537,34175957,34179097,34182867,34218450,34245191	0.772727
ovary_female_adult_53_years	chr11	86955933	86955950	86955933	+	High_confidence	3	3	14	0.910508	3.546594	chr11	86955862	86955972	SINE|MIR|MIRb	+	chr11	86956090	87000490	AP001528.1|ENST00000531827.1	+	86956090,86957981,86999875	86956260,86958026,87000490	0.714286
ovary_female_adult_53_years	chr9	2522005	2522039	2522005	-	High_confidence	7	8	26	1.690944	3.459491	chr9	2515633	2521964	LINE|L1|L1HS	-	chr9	2503279	2522019	VLDLR-AS1|ENST00000447278.1	-	2503279,2506358,2521902	2503403,2506540,2522019	0.961538
ovary_female_adult_53_years	chr2	231401094	231401095	231401094	+	RAMPAGE_only	30	30	32	2.081162	4.506891	chr2	231400711	231401206	LTR|ERV1|LTR2C	+	chr2	231395542	231408999	STRG.20921.1	+	231395542,231397730,231406023	231395814,231404514,231408999	0.937500
ovary_female_adult_53_years	chr20	62794205	62794246	62794245	-	High_confidence	4	4	19	1.235690	3.826875	chr20	62794047	62794206	SINE|MIR|MIRc	-	chr20	62793644	62794238	STRG.121322.1	-	62793644	62794238	0.947368
ovary_female_adult_53_years	chr10	75180246	75180267	75180246	+	RAMPAGE_only	6	6	13	0.845472	3.251629	chr10	75180211	75180258	DNA|hAT-Charlie|Charlie7a	+	chr10	75111708	75182123	SAMD8|ENST00000372687.4	+	75111708,75150513,75164644,75168540,75176065	75111778,75151106,75164740,75168658,75182123	0.923077
ovary_female_adult_53_years	chr1	203799223	203799285	203799240	+	High_confidence	3	3	22	1.430799	4.186704	chr1	203799077	203799888	DNA|hAT-Ac|OldhAT1	+	chr1	203799334	203854118	ZBED6|ENST00000545588.5	+	203799334,203816925,203818569,203828298,203829450,203829779,203830122,203831660,203833790,203837965,203840305,203847183,203848330,203849710,203850514,203851056,203852140	203803016,203817124,203818689,203828422,203829654,203829896,203830203,203831771,203833853,203838064,203840374,203847687,203848407,203850026,203850681,203851124,203854118	1.000000
ovary_female_adult_53_years	chrX	74197678	74197710	74197709	-	RAMPAGE_only	7	7	12	0.780436	3.022055	chrX	74196376	74198555	LINE|L1|L1MA9	-	chrX	74196350	74293574	FTX|ENST00000603037.2	-	74196350,74247331,74274341,74280393,74280930,74281701,74293351	74203909,74247424,74274410,74280494,74281085,74281848,74293574	1.000000
ovary_female_adult_53_years	chr7	47401170	47401197	47401196	-	RAMPAGE_only	8	8	21	1.365763	4.106603	chr7	47401190	47401377	LINE|CR1|L3b	-	chr7	47369496	47403425	TNS3|ENST00000469470.1	-	47369496,47396799,47400392,47400784,47403267	47369621,47396904,47400458,47400914,47403425	0.619048
ovary_female_adult_53_years	chr16	2757780	2757815	2757814	+	High_confidence	7	9	26	1.690944	3.779471	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.961538
ovary_female_adult_53_years	chr5	131316069	131316084	131316083	+	RAMPAGE_only	4	5	9	0.585327	2.750000	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131264099	131394667	CDC42SE2|ENST00000505065.1	+	131264099,131315975,131359208,131385542,131390992	131264166,131316144,131359547,131385644,131394667	0.888889
ovary_female_adult_53_years	chr7	101096409	101096410	101096409	+	RAMPAGE_only	5	5	8	0.520290	3.000000	chr7	101096410	101096644	SINE|MIR|MIRc	+	chr7	101086784	101097967	STRG.60089.2	+	101086784,101087311,101089856	101087168,101089749,101097967	1.000000
ovary_female_adult_53_years	chr7	106275904	106276027	106275976	-	RAMPAGE_only	9	10	43	2.796561	4.551622	chr7	106275752	106276050	SINE|Alu|AluSz	+	chr7	106269154	106284887	STRG.60553.20	-	106269154,106272529,106274945,106284827	106269312,106272658,106277179,106284887	1.000000
ovary_female_adult_53_years	chr18	7946878	7946898	7946878	+	High_confidence	72	74	188	12.226826	5.957531	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.813830
ovary_female_adult_53_years	chr2	34677546	34677554	34677552	+	High_confidence	31	40	60	3.902179	5.335813	chr2	34677192	34677662	LTR|ERV1|LTR2B	+	chr2	34677554	34737468	LINC01320|ENST00000625995.2	+	34677554,34710451,34713578,34732447,34735646,34737320	34677927,34710513,34713773,34732557,34735686,34737468	0.500000
ovary_female_adult_53_years	chr1	206052989	206053034	206053014	+	High_confidence	2	2	10	0.650363	2.921928	chr1	206053000	206053902	LTR|ERV1|Harlequin-int	+	chr1	206052844	206061913	STRG.8562.7	+	206052844,206061344,206061661	206060449,206061397,206061913	1.000000
ovary_female_adult_53_years	chr3	179681642	179681670	179681665	+	RAMPAGE_only	4	5	11	0.715399	3.095795	chr3	179681222	179681750	LTR|ERV1|LTR6A	-	chr3	179653692	179784406	USP13|ENST00000496897.5	+	179653692,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653750,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179784406	1.000000
ovary_female_adult_53_years	chr6	28354022	28354062	28354041	-	High_confidence	25	33	98	6.373558	5.907728	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324736	28354195	ZSCAN31|ENST00000396838.6	-	28324736,28327382,28329302,28336789,28337755,28341745,28353861,28354130	28326854,28327533,28329714,28336943,28337893,28341792,28353952,28354195	0.500000
ovary_female_adult_53_years	chr17	59620072	59620100	59620099	+	High_confidence	2	3	7	0.455254	2.521641	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.571429
ovary_female_adult_53_years	chr12	64078843	64078869	64078868	+	RAMPAGE_only	4	4	9	0.585327	2.503258	chr12	64078768	64078880	LINE|L2|L2c	+	chr12	63982524	64143780	SRGAP1|ENST00000543397.1	+	63982524,63989909,64016949,64042789,64043446,64062916,64065117,64078918,64080285,64086998,64091892,64094931,64095126,64097240,64108931,64111761,64115813,64125976,64127589,64127860,64142294	63984142,63990072,64017012,64042972,64043575,64063138,64065219,64079116,64080370,64087026,64091926,64094992,64095204,64097375,64109037,64111986,64115893,64126157,64127724,64128200,64143780	0.555556
ovary_female_adult_53_years	chr8	12557343	12557375	12557366	+	RAMPAGE_only	2	2	10	0.650363	3.121928	chr8	12556598	12558761	LINE|L1|L1M2	+	chr8	12436982	12559871	STRG.63034.2	+	12436982,12438163,12440968,12444755,12530942,12552089	12437710,12438511,12441061,12444894,12531031,12559871	0.900000
ovary_female_adult_53_years	chr6	31186398	31186399	31186398	-	High_confidence	125	130	149	9.690410	5.307843	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31181871	31186424	STRG.48698.2	-	31181871	31186424	0.966443
ovary_female_adult_53_years	chr8	38144662	38144906	38144825	-	RAMPAGE_only	4	9	82	5.332977	5.734184	chr8	38144734	38145032	SINE|Alu|AluSx4	+	chr8	38143651	38150992	STAR|ENST00000520114.1	-	38143651,38146288,38148199,38150754	38146147,38146447,38148754,38150992	0.975610
ovary_female_adult_53_years	chr15	74174548	74174572	74174571	+	High_confidence	22	24	77	5.007796	5.482941	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	0.987013
ovary_female_adult_53_years	chr5	147382883	147382900	147382883	+	High_confidence	17	19	57	3.707070	4.620269	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.807018
ovary_female_adult_53_years	chr16	81314782	81314819	81314782	-	High_confidence	11	11	40	2.601452	4.903056	chr16	81314567	81314733	SINE|MIR|MIR	-	chr16	81314079	81314523	STRG.107121.1	-	81314079	81314523	0.800000
ovary_female_adult_53_years	chr14	100831503	100831581	100831572	+	RAMPAGE_only	3	4	16	1.040581	3.452820	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100826132	100833328	MEG3|ENST00000452120.6	+	100826132,100828707,100829033	100826217,100828816,100833328	0.875000
ovary_female_adult_53_years	chr1	54277363	54277365	54277364	-	High_confidence	279	313	431	28.030650	6.158908	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54243236	54277715	STRG.2853.10	-	54243236,54251615,54251793,54277188	54243299,54251692,54257186,54277715	0.515081
ovary_female_adult_53_years	chr12	7502477	7502547	7502503	-	High_confidence	4	4	22	1.430799	3.884184	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.863636
ovary_female_adult_53_years	chr8	143281669	143281687	143281686	-	High_confidence	14	14	42	2.731525	4.832923	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143281069	143281665	MINCR|ENST00000524335.1	-	143281069,143281481	143281384,143281665	0.547619
ovary_female_adult_53_years	chr2	222599955	222600011	222600010	-	RAMPAGE_only	3	4	9	0.585327	2.503258	chr2	222599989	222600062	LINE|RTE-BovB|MamRTE1	-	chr2	222570535	222656337	FARSB|ENST00000281828.6	-	222570535,222599927,222613810,222619644,222623649,222624271,222624713,222628836,222630112,222631603,222633198,222634390,222639579,222640861,222642850,222648739,222656015	222572022,222600083,222613928,222619737,222623730,222624479,222624775,222628888,222630174,222631674,222633307,222634541,222639695,222640931,222643005,222648795,222656337	0.666667
ovary_female_adult_53_years	chr1	43525091	43525097	43525091	+	High_confidence	8	9	14	0.910508	3.324863	chr1	43524527	43525317	LINE|L2|L2c	-	chr1	43525186	43553519	PTPRF|ENST00000496043.5	+	43525186,43528656,43538197,43545030,43553491	43525257,43528756,43538277,43545166,43553519	0.642857
ovary_female_adult_53_years	chr1	6820195	6820198	6820197	+	RAMPAGE_only	10	11	16	1.040581	2.866248	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.562500
ovary_female_adult_53_years	chr5	136178923	136178985	136178984	+	RAMPAGE_only	2	2	10	0.650363	2.921928	chr5	136178772	136179073	SINE|Alu|AluSx4	+	chr5	136132846	136182734	SMAD5|ENST00000545620.5	+	136132846,136153591,136160855,136163271,136172433,136174375,136177336	136132962,136154163,136161107,136163391,136172655,136174632,136182734	1.000000
ovary_female_adult_53_years	chr2	231403896	231403897	231403896	+	RAMPAGE_only	85	89	115	7.479176	6.068906	chr2	231401206	231405702	LTR|ERV1|HERVE-int	+	chr2	231395542	231408999	STRG.20921.1	+	231395542,231397730,231406023	231395814,231404514,231408999	0.756522
ovary_female_adult_53_years	chr11	86938472	86938485	86938474	-	RAMPAGE_only	18	29	46	2.991670	4.569773	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86892213	86922104	AP001528.2|ENST00000528660.1	-	86892213,86896412,86921235	86892372,86896540,86922104	0.978261
ovary_female_adult_53_years	chr11	77175254	77175303	77175302	+	High_confidence	4	4	18	1.170654	3.614369	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
ovary_female_adult_53_years	chr12	104864879	104864979	104864978	+	High_confidence	148	148	705	45.850599	6.732104	chr12	104863461	104865746	LINE|L1|HAL1	-	chr12	104864895	104871851	STRG.90887.1	+	104864895,104869020,104870161	104865071,104869181,104871851	0.902128
ovary_female_adult_53_years	chr9	69374334	69374350	69374349	+	RAMPAGE_only	4	4	10	0.650363	2.521928	chr9	69373810	69374422	LINE|L1|L1ME2	-	chr9	69375781	69392455	FAM189A2|ENST00000645516.1	+	69375781,69377369,69377610,69383629,69383946,69385794,69391600	69375864,69377477,69377744,69383759,69384025,69388450,69392455	0.600000
ovary_female_adult_53_years	chr12	16382873	16382874	16382873	+	High_confidence	6	7	9	0.585327	2.750000	chr12	16377145	16383292	LINE|L1|L1PA4	-	chr12	16382826	16438761	MGST1|ENST00000359720.3	+	16382826,16437387	16383604,16438761	0.666667
ovary_female_adult_53_years	chr19	46413560	46413612	46413611	-	High_confidence	30	32	117	7.609248	5.880703	chr19	46413579	46413731	LTR|Gypsy|LTR104_Mam	-	chr19	46410378	46413564	CCDC8|ENST00000307522.4	-	46410378	46413564	1.000000
ovary_female_adult_53_years	chr12	122218272	122218289	122218272	-	High_confidence	4	4	9	0.585327	2.725481	chr12	122218031	122218232	DNA|hAT-Charlie|MER58A	-	chr12	122208315	122218289	DIABLO|ENST00000439489.6	-	122208315,122209696,122216487,122216758,122218265	122208577,122209858,122216584,122216869,122218289	0.888889
ovary_female_adult_53_years	chr1	35145263	35145279	35145263	-	RAMPAGE_only	3	3	13	0.845472	2.918296	chr1	35144755	35145857	LTR|ERV1|HERV3-int	-	chr1	35141514	35146435	AL590434.1|ENST00000641402.1	-	35141514,35144866,35146298	35143033,35145096,35146435	0.923077
ovary_female_adult_53_years	chr19	3062922	3062940	3062939	-	High_confidence	6	7	14	0.910508	3.085055	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.928571
ovary_female_adult_53_years	chr2	231401383	231401384	231401383	+	RAMPAGE_only	20	20	21	1.365763	4.021928	chr2	231401206	231405702	LTR|ERV1|HERVE-int	+	chr2	231395542	231408999	STRG.20921.1	+	231395542,231397730,231406023	231395814,231404514,231408999	0.952381
ovary_female_adult_53_years	chr4	4269609	4269614	4269609	-	High_confidence	10	11	24	1.560871	2.867634	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.875000
ovary_female_adult_53_years	chr16	67571162	67571196	67571195	+	High_confidence	4	4	13	0.845472	3.180833	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	1.000000
ovary_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	8392	8667	23409	1522.434991	7.766085	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.891794
ovary_female_adult_53_years	chr4	5640815	5640835	5640815	-	RAMPAGE_only	3	3	7	0.455254	2.584963	chr4	5640709	5640794	LINE|L2|L2	-	chr4	5562418	5708567	EVC2|NM_147127.4	-	5562418,5565257,5568443,5574684,5576239,5584622,5615421,5618477,5622536,5625748,5628558,5631792,5640513,5663106,5665514,5681259,5685369,5689156,5691264,5694334,5697592,5708285	5563115,5565359,5568640,5574772,5576454,5584850,5615544,5618682,5622991,5625908,5628734,5632032,5640838,5663246,5665649,5681313,5685479,5689343,5691333,5694501,5697647,5708567	0.857143
ovary_female_adult_53_years	chr5	176217560	176217563	176217560	-	High_confidence	3	3	9	0.585327	2.947703	chr5	176216196	176218144	LTR|ERV1|MER83A-int	+	chr5	176178939	176217562	STRG.46730.6	-	176178939,176183230,176185100,176186161,176204748,176217388	176182763,176183301,176185342,176187596,176204927,176217562	0.666667
ovary_female_adult_53_years	chr18	34709331	34709343	34709342	+	High_confidence	4	4	14	0.910508	3.180833	chr18	34709150	34709395	LINE|L2|L2c	-	chr18	34710231	34868812	DTNA|NM_001198941.1	+	34710231,34755975,34765960,34794036,34806218,34811958,34815908,34818163,34820790,34827592,34848295,34851830,34858284,34863965,34866110	34710445,34756043,34766041,34794250,34806304,34812113,34816014,34818330,34820915,34827676,34848383,34851928,34858398,34864062,34868812	0.714286
ovary_female_adult_53_years	chr2	38515655	38515697	38515655	-	High_confidence	3	3	15	0.975545	3.235926	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.800000
ovary_female_adult_53_years	chr1	52914002	52914003	52914002	-	RAMPAGE_only	6	6	9	0.585327	2.725481	chr1	52913984	52914299	LINE|L2|L2b	-	chr1	52913719	52921721	ECHDC2|ENST00000474789.1	-	52913719,52921552	52914095,52921721	0.666667
ovary_female_adult_53_years	chr1	35408134	35408148	35408134	+	High_confidence	7	7	13	0.845472	2.625815	chr1	35408149	35408455	LINE|L1|L1ME3G	+	chr1	35407324	35421944	STRG.1683.6	+	35407324,35413971,35415465,35418442	35408159,35414083,35415714,35421944	0.846154
ovary_female_adult_53_years	chr20	50172544	50172590	50172589	+	High_confidence	9	9	35	2.276271	4.843569	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172589	50176671	LINC01273|ENST00000411453.2	+	50172589,50172922,50176280	50172788,50173017,50176671	0.514286
ovary_female_adult_53_years	chr15	80059915	80059919	80059918	+	High_confidence	52	58	98	6.373558	4.489466	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.959184
ovary_female_adult_53_years	chr7	134432419	134432451	134432450	-	High_confidence	5	5	10	0.650363	2.641604	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.700000
ovary_female_adult_53_years	chr7	106259392	106259427	106259426	-	RAMPAGE_only	9	9	29	1.886053	4.236369	chr7	106258567	106259430	DNA|TcMar-Tigger|Tigger1	-	chr7	106248284	106284887	STRG.60553.4	-	106248284,106253016,106254363,106263391,106269153,106272529,106274945,106277022,106284827	106251193,106253151,106261707,106268600,106269312,106272658,106275049,106277179,106284887	0.931034
ovary_female_adult_53_years	chr8	28090231	28090232	28090231	+	High_confidence	9	10	10	0.650363	2.641604	chr8	28089941	28090482	LTR|ERVL|LTR66	+	chr8	28090230	28191156	ELP3|ENST00000521015.5	+	28090230,28097218,28099827,28106712,28107912,28110369,28113018,28129501,28132277,28137697,28155941,28158567,28160228,28161996,28189648	28090332,28097318,28099966,28106783,28107976,28110438,28113173,28129663,28132404,28137891,28156032,28158633,28160456,28162078,28191156	0.800000
ovary_female_adult_53_years	chr5	172854458	172854472	172854458	+	RAMPAGE_only	4	7	13	0.845472	3.334679	chr5	172854401	172854991	DNA|TcMar-Tigger|MER6A	+	chr5	172834384	172924061	ERGIC1|ENST00000520642.5	+	172834384,172888698,172897001,172914713,172915517,172924004	172834433,172888760,172897074,172914838,172915690,172924061	0.538462
ovary_female_adult_53_years	chr9	108885821	108885872	108885871	-	RAMPAGE_only	135	139	361	23.478108	6.897550	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108867516	108893083	ELP1|ENST00000495759.5	-	108867516,108874894,108875632,108877994,108878622,108879445,108880051,108881704,108882124,108889331,108891202,108892985	108869182,108874970,108875735,108878149,108878750,108879557,108880165,108881765,108882187,108889393,108891404,108893083	0.919668
ovary_female_adult_53_years	chr16	20679486	20679822	20679756	+	RAMPAGE_only	19	20	213	13.852734	6.429761	chr16	20678043	20681722	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	1.000000
ovary_female_adult_53_years	chrX	20204049	20204057	20204049	-	RAMPAGE_only	4	4	8	0.520290	2.521641	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.875000
ovary_female_adult_53_years	chr7	106269670	106269699	106269698	-	RAMPAGE_only	5	5	12	0.780436	3.188722	chr7	106269677	106269812	DNA|hAT-Charlie|MER5C1	-	chr7	106248284	106284887	STRG.60553.3	-	106248284,106253016,106254363,106261587,106263391,106268463,106269153,106274945,106277022,106284827	106251193,106253151,106254504,106261707,106263617,106268600,106272658,106275049,106277179,106284887	1.000000
ovary_female_adult_53_years	chr3	65030794	65030814	65030813	+	RAMPAGE_only	3	3	7	0.455254	2.807355	chr3	65030512	65031391	LINE|L2|L2b	-	chr3	65017957	65064737	STRG.25964.5	+	65017957,65019559,65023848,65050717,65061623	65018652,65019651,65043626,65059658,65064737	1.000000
ovary_female_adult_53_years	chr2	72693342	72693354	72693353	-	RAMPAGE_only	23	24	38	2.471380	4.204511	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.947368
ovary_female_adult_53_years	chr12	26832728	26832798	26832766	-	High_confidence	4	5	26	1.690944	4.323856	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.846154
ovary_female_adult_53_years	chr11	13419689	13419721	13419720	-	RAMPAGE_only	2	2	8	0.520290	2.807355	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.875000
ovary_female_adult_53_years	chrX	90458768	90458775	90458773	+	High_confidence	4	7	12	0.780436	2.855389	chrX	90458703	90458897	LTR|ERV1|PABL_B	-	chrX	90458616	90466971	STRG.129069.1	+	90458616	90466971	1.000000
ovary_female_adult_53_years	chr5	150125450	150125474	150125450	-	RAMPAGE_only	11	11	23	1.495835	4.106603	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.739130
ovary_female_adult_53_years	chr9	20658568	20658608	20658606	+	High_confidence	5	9	18	1.170654	3.454822	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658334	20917131	STRG.68492.5	+	20658334,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20907149,20912865,20916892	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20907242,20912954,20917131	0.777778
ovary_female_adult_53_years	chr1	155679929	155679930	155679929	-	High_confidence	11	11	11	0.715399	3.277613	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	1.000000
ovary_female_adult_53_years	chr3	151539250	151539414	151539265	-	High_confidence	60	75	746	48.517088	7.193954	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151539411	STRG.29861.4	-	151433493,151442983,151444918,151453383,151457025,151458515,151467062	151438597,151443884,151449265,151453774,151457155,151467001,151539411	0.985255
ovary_female_adult_53_years	chr6	150993341	150993431	150993368	+	High_confidence	9	9	62	4.032251	5.412105	chr6	150993332	150993611	SINE|Alu|AluSz6	-	chr6	150993364	151035013	STRG.54211.6	+	150993364,151009818,151013778,151014879,151015515,151034492	150993695,151009958,151013820,151014980,151015693,151035013	0.903226
ovary_female_adult_53_years	chr7	111413972	111414010	111413984	-	RAMPAGE_only	9	9	47	3.056707	4.705961	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	111403856	111449563	STRG.60644.8	-	111403856,111428272	111428182,111449563	0.659574
ovary_female_adult_53_years	chr12	12927716	12927737	12927733	+	High_confidence	44	47	82	5.332977	5.870051	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.609756
ovary_female_adult_53_years	chr5	55982737	55982758	55982737	-	High_confidence	4	5	11	0.715399	3.277613	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	1.000000
ovary_female_adult_53_years	chr8	99892029	99892057	99892056	-	RAMPAGE_only	78	78	179	11.641500	4.874098	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.994413
ovary_female_adult_53_years	chr3	44751900	44751911	44751900	-	RAMPAGE_only	2	2	6	0.390218	2.584963	chr3	44751308	44751991	LTR|ERV1|LOR1-int	+	chr3	44748743	44761662	KIAA1143|ENST00000296121.5	-	44748743,44754223,44761494	44753552,44754368,44761662	1.000000
ovary_female_adult_53_years	chr4	38624507	38624517	38624507	-	RAMPAGE_only	5	5	11	0.715399	3.095795	chr4	38624273	38624503	SINE|MIR|MIRc	-	chr4	38612700	38664628	KLF3-AS1|NR_026804.1	-	38612700,38614624,38624421,38625601,38628038,38630499,38635955,38664175	38613259,38614708,38625283,38625762,38628102,38630581,38636058,38664628	0.909091
ovary_female_adult_53_years	chr8	80485592	80485593	80485592	+	High_confidence	4	4	7	0.455254	2.521641	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.571429
ovary_female_adult_53_years	chrX	54926971	54926975	54926971	+	High_confidence	5	5	11	0.715399	2.921928	chrX	54926860	54926986	LINE|CR1|L3	-	chrX	54927284	54928947	TRO|ENST00000469211.1	+	54927284,54928602	54927781,54928947	0.545455
ovary_female_adult_53_years	chr11	65430452	65430816	65430815	+	RAMPAGE_only	41	46	395	25.689343	5.666926	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
ovary_female_adult_53_years	chr22	39021125	39021156	39021155	+	High_confidence	5	6	25	1.625908	3.969002	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.920000
ovary_female_adult_53_years	chr9	128921399	128921400	128921399	+	High_confidence	29	30	42	2.731525	4.552197	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.952381
ovary_female_adult_53_years	chr8	86515469	86515485	86515469	+	High_confidence	2	2	6	0.390218	2.584963	chr8	86515376	86515543	SINE|MIR|MIRb	-	chr8	86514503	86532580	CPNE3|ENST00000523469.5	+	86514503,86515461,86521603,86528535,86528944,86531154,86532508	86514541,86515499,86521714,86528677,86529124,86531229,86532580	0.833333
ovary_female_adult_53_years	chr12	24368595	24368634	24368633	-	RAMPAGE_only	9	10	27	1.755980	3.699471	chr12	24368549	24368674	LINE|L2|L2b	+	chr12	23845998	24357430	SOX5|ENST00000536729.2	-	23845998,23895897,24213342,24277215,24357337	23846193,23896024,24213417,24277312,24357430	0.888889
ovary_female_adult_53_years	chr7	11194708	11194730	11194708	+	High_confidence	20	23	46	2.991670	4.720113	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11194588	11383869	STRG.55760.1	+	11194588,11197309,11244257,11379286,11383796	11194784,11197444,11244479,11379369,11383869	0.673913
ovary_female_adult_53_years	chr5	111127552	111127592	111127552	+	RAMPAGE_only	3	4	15	0.975545	2.950212	chr5	111127475	111127556	SINE|MIR|MIR3	-	chr5	111092171	111130502	WDR36|ENST00000612402.4	+	111092171,111094919,111097078,111098721,111100588,111102344,111103785,111104176,111104696,111105294,111106056,111107293,111110188,111110787,111111169,111113073,111119012,111120495,111120995,111123804,111124107,111125607,111126733	111092618,111094947,111097179,111098839,111100721,111102399,111103918,111104352,111104817,111105360,111106143,111107439,111110303,111110953,111111278,111113153,111119120,111120593,111121141,111123924,111124189,111125795,111130502	0.933333
ovary_female_adult_53_years	chr6	110330303	110330330	110330320	-	RAMPAGE_only	2	2	8	0.520290	2.807355	chr6	110329832	110331376	LINE|L1|L1MD2	+	chr6	110244018	110332790	STRG.52337.2	-	110244018,110298921,110315341,110322773,110332439	110246260,110299150,110315481,110322872,110332790	0.500000
ovary_female_adult_53_years	chr16	20680457	20680705	20680457	+	RAMPAGE_only	17	21	225	14.633170	6.369871	chr16	20678043	20681722	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	1.000000
ovary_female_adult_53_years	chr9	111284874	111284875	111284874	-	High_confidence	9	9	9	0.585327	2.947703	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	1.000000
ovary_female_adult_53_years	chr13	52570279	52570325	52570323	+	RAMPAGE_only	6	9	25	1.625908	4.251629	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.800000
ovary_female_adult_53_years	chr16	20714226	20714388	20714367	+	RAMPAGE_only	16	16	122	7.934430	5.476455	chr16	20714153	20714850	LINE|L2|L2	-	chr16	20689047	20741238	STRG.105259.15	+	20689047,20720590	20720557,20741238	0.991803
ovary_female_adult_53_years	chr4	122209253	122209321	122209314	+	High_confidence	4	4	20	1.300726	2.884184	chr4	122209362	122209650	SINE|Alu|AluSx	+	chr4	122209173	122227747	KIAA1109|ENST00000482114.1	+	122209173,122209817,122210886,122219339,122220332,122224497	122209337,122209924,122211095,122219567,122220470,122227747	0.950000
ovary_female_adult_53_years	chr17	41871790	41871820	41871790	-	RAMPAGE_only	3	3	9	0.585327	2.500000	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.888889
ovary_female_adult_53_years	chr16	761110	761120	761114	+	High_confidence	16	16	54	3.511961	4.510086	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	1.000000
ovary_female_adult_53_years	chr11	123060124	123060256	123060124	-	High_confidence	23	23	206	13.397480	5.413966	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.597087
ovary_female_adult_53_years	chr21	36005313	36005320	36005313	+	High_confidence	111	116	212	13.787698	6.592170	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.820755
ovary_female_adult_53_years	chr6	144533095	144533106	144533105	+	RAMPAGE_only	3	3	7	0.455254	2.521641	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	1.000000
ovary_female_adult_53_years	chr17	59651206	59651215	59651214	+	RAMPAGE_only	5	5	15	0.975545	3.506891	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.933333
ovary_female_adult_53_years	chr4	7754076	7754077	7754076	+	High_confidence	28	30	31	2.016126	4.573557	chr4	7753883	7754236	LTR|ERVL-MaLR|THE1A	+	chr4	7754089	7778928	AFAP1-AS1|NR_026892.1	+	7754089,7772203	7754159,7778928	0.774194
ovary_female_adult_53_years	chr3	151537919	151537942	151537941	-	RAMPAGE_only	3	3	10	0.650363	3.169925	chr3	151537591	151537951	LINE|CR1|CR1-12_AMi	-	chr3	151433493	151539411	STRG.29861.4	-	151433493,151442983,151444918,151453383,151457025,151458515,151467062	151438597,151443884,151449265,151453774,151457155,151467001,151539411	0.600000
ovary_female_adult_53_years	chr7	154928503	154928504	154928503	+	High_confidence	34	34	42	2.731525	4.662815	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.880952
ovary_female_adult_53_years	chr17	19386351	19386370	19386351	-	High_confidence	3	3	12	0.780436	2.688722	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	1.000000
ovary_female_adult_53_years	chr19	20432230	20432231	20432230	-	High_confidence	7	8	8	0.520290	2.807355	chr19	20432120	20432598	LTR|ERV1|LTR2B	-	chr19	20431527	20431884	STRG.116180.1	-	20431527	20431884	0.625000
ovary_female_adult_53_years	chr9	92536601	92536675	92536601	-	High_confidence	40	48	230	14.958351	6.035631	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.934783
ovary_female_adult_53_years	chr1	19980361	19980363	19980362	-	High_confidence	23	38	38	2.471380	4.892147	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	0.894737
ovary_female_adult_53_years	chr1	196741446	196741488	196741487	+	RAMPAGE_only	4	4	12	0.780436	3.022055	chr1	196741215	196741581	LTR|ERVL-MaLR|THE1D	-	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	1.000000
ovary_female_adult_53_years	chr2	36513759	36513760	36513759	+	High_confidence	9	9	13	0.845472	3.392747	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.846154
ovary_female_adult_53_years	chr12	123390725	123390745	123390725	+	High_confidence	4	4	9	0.585327	2.947703	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	1.000000
ovary_female_adult_53_years	chr19	51886826	51886827	51886826	-	High_confidence	6	6	9	0.585327	2.947703	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51880697	51886465	ZNF577|ENST00000639183.1	-	51880697,51886115	51880877,51886465	0.777778
ovary_female_adult_53_years	chr17	68949449	68949467	68949449	-	RAMPAGE_only	3	3	7	0.455254	2.521641	chr17	68949177	68950445	LINE|L1|L1P1	+	chr17	68937070	68944874	ABCA8|ENST00000585531.1	-	68937070,68940757,68941938,68944716	68937115,68940962,68942039,68944874	0.857143
ovary_female_adult_53_years	chr7	101308269	101308325	101308293	+	High_confidence	5	5	14	0.910508	3.324863	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	1.000000
ovary_female_adult_53_years	chr1	65601850	65601851	65601850	+	RAMPAGE_only	6	7	8	0.520290	2.750000	chr1	65601809	65601923	SINE|MIR|MIR1_Amn	-	chr1	65565545	65626234	LEPR|ENST00000371058.1	+	65565545,65570472,65572325,65592656,65596447,65598659,65601391,65601842,65605037,65608752,65609946,65610213,65616007,65617963,65619927,65621352,65622905,65626122	65565605,65570802,65572449,65592865,65596593,65598804,65601682,65601960,65605237,65608901,65610106,65610296,65616224,65618146,65620023,65621458,65622981,65626234	0.750000
ovary_female_adult_53_years	chr6	31400605	31400628	31400605	-	High_confidence	5	5	16	1.040581	3.323231	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31399601	31400607	STRG.48716.3	-	31399601	31400607	0.937500
ovary_female_adult_53_years	chr12	10553364	10553365	10553364	+	High_confidence	9	9	11	0.715399	2.921928	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.545455
ovary_female_adult_53_years	chr19	20423688	20423704	20423703	-	High_confidence	36	54	112	7.284067	5.174953	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20404966	20423713	STRG.116159.17	-	20404966,20408949,20423480	20406132,20409045,20423713	0.723214
ovary_female_adult_53_years	chr10	114474222	114474223	114474222	-	RAMPAGE_only	11	11	17	1.105617	3.500000	chr10	114474202	114474384	LINE|L2|L2b	+	chr10	114450078	114487993	ABLIM1|ENST00000440467.5	-	114450078,114451623,114465697,114468180,114472976,114473878,114487957	114450135,114451671,114465827,114468216,114473132,114473956,114487993	0.588235
ovary_female_adult_53_years	chr19	41457412	41457413	41457412	-	High_confidence	7	10	11	0.715399	2.521928	chr19	41457330	41457753	LTR|ERVL|MER21-int	-	chr19	41454266	41457134	STRG.117107.1	-	41454266,41456615	41456487,41457134	0.909091
ovary_female_adult_53_years	chr12	883766	883830	883829	+	RAMPAGE_only	4	5	11	0.715399	2.845351	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	752922	911451	WNK1|ENST00000530271.6	+	752922,813641,827041,830002,857160,859244,861012,862082,867865,871264,878211,879572,880720,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,901560,904452,907846,908474	754324,813814,827262,830160,857249,859464,861343,862270,869104,871348,878361,880031,880999,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,901632,904494,908034,911451	0.818182
ovary_female_adult_53_years	chr2	232816731	232816752	232816751	+	RAMPAGE_only	6	7	16	1.040581	3.506891	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.937500
ovary_female_adult_53_years	chr2	159382560	159382567	159382566	-	RAMPAGE_only	7	7	13	0.845472	3.251629	chr2	159382314	159382523	SINE|MIR|MIRb	-	chr2	159336959	159377746	STRG.17425.6	-	159336959,159337461,159347485,159348677,159349006,159349707,159373044,159374690	159337077,159337772,159347646,159348833,159349280,159350357,159373189,159377746	0.923077
ovary_female_adult_53_years	chr17	50737312	50737374	50737312	+	RAMPAGE_only	1	1	9	0.585327	3.000000	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50740266	50744808	LUC7L3|ENST00000507503.1	+	50740266,50741101,50741656,50743705,50744651	50740345,50741246,50741731,50743810,50744808	0.555556
ovary_female_adult_53_years	chrX	103536108	103536134	103536117	-	High_confidence	4	4	11	0.715399	2.721928	chrX	103535966	103536120	SINE|MIR|MIRb	+	chrX	103532503	103536843	STRG.129470.7	-	103532503	103536843	0.727273
ovary_female_adult_53_years	chr14	81427414	81427444	81427414	-	High_confidence	2	2	11	0.715399	2.846439	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.909091
ovary_female_adult_53_years	chr1	196404264	196404273	196404272	-	RAMPAGE_only	8	10	23	1.495835	2.964976	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196256768	196430361	STRG.8184.6	-	196256768,196280859,196282272,196285656,196305233,196315891,196319483,196331155,196333846,196340340,196342078,196373139,196398562,196423049,196425851,196428104,196429576	196258494,196280988,196282356,196285758,196305345,196316026,196326889,196331261,196334060,196340570,196342249,196373248,196398671,196423113,196425988,196428269,196430361	0.608696
ovary_female_adult_53_years	chr18	9588166	9588181	9588166	-	RAMPAGE_only	3	3	11	0.715399	2.550341	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9561982	9595061	STRG.112483.4	-	9561982,9562921,9563377,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9593767,9595017	9562075,9563046,9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9593874,9595061	1.000000
ovary_female_adult_53_years	chr6	43013379	43013393	43013392	-	High_confidence	7	7	15	0.975545	3.906891	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
ovary_female_adult_53_years	chr6	118651542	118651593	118651592	-	High_confidence	32	32	167	10.861064	5.968630	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.982036
ovary_female_adult_53_years	chr19	21440770	21440811	21440808	-	RAMPAGE_only	7	7	30	1.951089	4.306891	chr19	21440667	21441176	LTR|ERV1|LTR61	-	chr19	21430555	21449823	STRG.116281.4	-	21430555,21440414,21445716	21433947,21444133,21449823	0.900000
ovary_female_adult_53_years	chr3	195688586	195688620	195688586	+	High_confidence	4	4	17	1.105617	3.616875	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688425	195699116	MUC20-OT1|ENST00000626870.2	+	195688425,195689338,195689545,195696360,195699029	195688797,195689438,195689608,195696589,195699116	0.647059
ovary_female_adult_53_years	chr6	31186117	31186118	31186117	-	High_confidence	6	6	8	0.520290	2.521641	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31181871	31186424	STRG.48698.2	-	31181871	31186424	0.750000
ovary_female_adult_53_years	chr9	39809858	39809868	39809858	-	High_confidence	6	8	18	1.170654	3.410417	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.666667
ovary_female_adult_53_years	chr12	46243277	46243292	46243291	-	RAMPAGE_only	8	8	13	0.845472	3.251629	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.923077
ovary_female_adult_53_years	chr11	65437401	65437521	65437479	+	RAMPAGE_only	8	8	101	6.568667	4.922215	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.970297
ovary_female_adult_53_years	chr19	15828990	15829060	15829059	+	High_confidence	8	9	21	1.365763	3.884184	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829050	15835417	UCA1|ENST00000644845.1	+	15829050,15831254,15834635,15835217	15829338,15831356,15835114,15835417	0.523810
ovary_female_adult_53_years	chr12	8681599	8681600	8681599	+	High_confidence	9	10	13	0.845472	3.418296	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.615385
ovary_female_adult_53_years	chr9	2521946	2521966	2521946	-	High_confidence	5	6	10	0.650363	2.641604	chr9	2515633	2521964	LINE|L1|L1HS	-	chr9	2503279	2522019	VLDLR-AS1|ENST00000447278.1	-	2503279,2506358,2521902	2503403,2506540,2522019	0.800000
ovary_female_adult_53_years	chr6	116277716	116277778	116277777	-	RAMPAGE_only	3	3	10	0.650363	3.121928	chr6	116277660	116277934	SINE|Alu|AluSg	+	chr6	116276577	116279903	TSPYL1|ENST00000368608.3	-	116276577	116279903	1.000000
ovary_female_adult_53_years	chr1	235589035	235589059	235589035	-	High_confidence	2	2	8	0.520290	2.750000	chr1	235589032	235589593	LTR|ERVL|LTR18B	+	chr1	235551753	235588959	GNG4|ENST00000484517.2	-	235551753,235583739,235588868	235552237,235583848,235588959	0.625000
ovary_female_adult_53_years	chr5	32403115	32403167	32403148	-	RAMPAGE_only	9	9	42	2.731525	4.564820	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
ovary_female_adult_53_years	chr19	48868595	48868617	48868595	-	High_confidence	171	176	787	51.183576	7.505604	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.996188
ovary_female_adult_53_years	chr3	69237171	69237183	69237171	-	RAMPAGE_only	3	3	8	0.520290	2.521641	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.500000
ovary_female_adult_53_years	chr3	197913260	197913296	197913295	-	High_confidence	111	115	293	19.055639	6.519976	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	STRG.32427.5	-	197889077,197892627,197912674	197891547,197892759,197913284	0.955631
ovary_female_adult_53_years	chr6	89656021	89656046	89656021	-	RAMPAGE_only	2	2	6	0.390218	2.584963	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642498	89819723	MDN1|ENST00000369393.7	-	89642498,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89706058,89707360,89708495,89710680,89712035,89712574,89713147,89714542,89715652,89716649,89718365,89718766,89719135,89722954,89723511,89725198,89727832,89728930,89730725,89732556,89738325,89740233,89743149,89743575,89745272,89745491,89747328,89749222,89749542,89750353,89751430,89753511,89754082,89756276,89758254,89758815,89761644,89762318,89771560,89772572,89774620,89776599,89780211,89781398,89785011,89787853,89789779,89790158,89793761,89794099,89794576,89803327,89819505	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89706192,89707476,89708628,89710794,89712256,89712786,89713296,89714751,89715769,89716809,89718627,89719030,89719225,89723143,89723619,89725396,89727955,89729139,89730923,89732775,89738455,89740378,89743280,89743714,89745411,89745626,89747470,89749369,89749751,89750532,89751582,89753622,89754230,89756390,89758351,89758960,89761748,89762530,89771621,89772721,89774733,89776695,89780293,89781592,89785126,89787957,89789911,89790401,89793954,89794207,89794801,89803554,89819723	1.000000
ovary_female_adult_53_years	chr19	49717725	49717766	49717765	+	High_confidence	4	4	12	0.780436	2.913977	chr19	49717515	49717903	LTR|ERVL|LTR50	+	chr19	49717746	49718069	STRG.117624.1	+	49717746	49718069	0.500000
ovary_female_adult_53_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	9	9	9	0.585327	2.725481	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182909114	183038472	NCKAP1|ENST00000361354.8	-	182909114,182926815,182928116,182928782,182930694,182934751,182935292,182942069,182952404,182952792,182953112,182956461,182957456,182962158,182964675,182967215,182976892,182978833,182981243,182982820,182983285,182986170,182989029,182994838,182995700,183001952,183002126,183002973,183003232,183023805,183037991	182925818,182926905,182928226,182928899,182930788,182934832,182935375,182942163,182952502,182952923,182953331,182956593,182957596,182962278,182964808,182967361,182976951,182978915,182981376,182982927,182983382,182986227,182989186,182994887,182995838,183002043,183002269,183003030,183003325,183023916,183038472	0.888889
ovary_female_adult_53_years	chr7	11193340	11193367	11193340	+	High_confidence	37	38	88	5.723195	5.274086	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.715909
ovary_female_adult_53_years	chr8	120124419	120124457	120124456	+	High_confidence	5	5	17	1.105617	2.983459	chr8	120124361	120124487	DNA|hAT-Charlie|MER5A	+	chr8	120125107	120373575	COL14A1|NM_021110.3	+	120125107,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120278110,120278434,120279934,120280710,120280920,120283635,120285860,120289607,120297510,120300731,120310008,120313931,120315532,120315943,120332140,120332663,120341324,120342379,120345374,120367170,120369329,120371151	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120278234,120278578,120280099,120280749,120281059,120283778,120285970,120289766,120297588,120300818,120310062,120314027,120315586,120315997,120332194,120332735,120341360,120342446,120345563,120367248,120369485,120373575	0.941176
ovary_female_adult_53_years	chr4	22599614	22599615	22599614	+	High_confidence	55	55	59	3.837142	4.232054	chr4	22599245	22599724	LTR|ERV1|LTR2B	+	chr4	22599626	22600376	STRG.34046.1	+	22599626	22600376	0.966102
ovary_female_adult_53_years	chr11	77571074	77571179	77571178	+	High_confidence	13	14	64	4.162324	5.046570	chr11	77570921	77571455	LTR|ERV1|LTR61	+	chr11	77571088	77575662	LOC646029|NR_130930.1	+	77571088,77571514,77574210	77571310,77571685,77575662	0.968750
ovary_female_adult_53_years	chr8	102930162	102930183	102930162	+	High_confidence	3	3	10	0.650363	3.321928	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	1.000000
ovary_female_adult_53_years	chr12	56824432	56824435	56824434	+	High_confidence	37	62	74	4.812687	5.041837	chr12	56824190	56824668	LTR|ERVL|LTR42	+	chr12	56824355	56874333	STRG.88370.1	+	56824355,56871046	56824496,56874333	0.702703
ovary_female_adult_53_years	chr5	109383485	109383516	109383515	-	High_confidence	3	3	10	0.650363	3.321928	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
ovary_female_adult_53_years	chr16	20706354	20706358	20706354	+	RAMPAGE_only	3	3	7	0.455254	2.807355	chr16	20706398	20706853	LINE|L1|L1M3a	+	chr16	20689047	20741238	STRG.105259.15	+	20689047,20720590	20720557,20741238	1.000000
ovary_female_adult_53_years	chr22	26512127	26512130	26512129	-	High_confidence	4	6	8	0.520290	2.500000	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	1.000000
ovary_female_adult_53_years	chr12	79441413	79441466	79441413	-	High_confidence	3	3	12	0.780436	3.418296	chr12	79441347	79441614	SINE|Alu|AluSx	-	chr12	79438479	79441413	STRG.89596.1	-	79438479	79441413	0.833333
ovary_female_adult_53_years	chr8	38145345	38145498	38145497	-	RAMPAGE_only	20	20	99	6.438595	5.134300	chr8	38145472	38145710	DNA|hAT|MamRep38	+	chr8	38143651	38150992	STAR|ENST00000520114.1	-	38143651,38146288,38148199,38150754	38146147,38146447,38148754,38150992	0.959596
ovary_female_adult_53_years	chr9	39810033	39810034	39810033	-	High_confidence	10	10	15	0.975545	3.189898	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.733333
ovary_female_adult_53_years	chr4	102431244	102431249	102431248	-	High_confidence	5	11	16	1.040581	3.702820	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	1.000000
ovary_female_adult_53_years	chr21	26841236	26841237	26841236	-	High_confidence	11	11	11	0.715399	3.277613	chr21	26841205	26841502	SINE|Alu|AluSz	+	chr21	26836286	26841711	ADAMTS1|ENST00000464589.1	-	26836286,26838438,26839874,26840997	26838278,26839762,26840562,26841711	0.909091
ovary_female_adult_53_years	chr16	2205780	2205851	2205850	+	High_confidence	5	5	44	2.861598	4.589021	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.909091
ovary_female_adult_53_years	chr3	121788297	121788317	121788316	-	RAMPAGE_only	4	5	9	0.585327	3.000000	chr3	121788145	121788280	SINE|MIR|MIRc	-	chr3	121769762	121830236	STRG.28314.2	-	121769762,121772556,121781742,121790072,121795456,121797117,121799195,121807343,121808915,121826050,121828469,121828860	121770574,121772713,121781874,121790215,121795566,121797227,121799374,121807443,121809009,121826180,121828632,121830236	0.777778
ovary_female_adult_53_years	chr11	93499283	93499304	93499303	-	High_confidence	3	3	11	0.715399	2.721928	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	0.909091
ovary_female_adult_53_years	chrX	136936276	136936277	136936276	-	High_confidence	21	22	27	1.755980	4.100069	chrX	136936168	136936652	LTR|ERV1|LTR2C	-	chrX	136925063	136936269	STRG.131014.1	-	136925063,136935901	136925259,136936269	0.814815
ovary_female_adult_53_years	chr2	68679566	68679583	68679582	+	High_confidence	6	6	11	0.715399	2.921928	chr2	68677861	68680074	LINE|L1|L1PA3	-	chr2	68679571	68710964	STRG.14035.1	+	68679571,68710504	68680095,68710964	0.545455
ovary_female_adult_53_years	chr9	20658312	20658349	20658348	+	High_confidence	41	61	128	8.324648	4.994976	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658334	20917131	STRG.68492.5	+	20658334,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20907149,20912865,20916892	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20907242,20912954,20917131	0.898438
ovary_female_adult_53_years	chr5	113262580	113262611	113262580	-	RAMPAGE_only	10	12	27	1.755980	4.238901	chr5	113262508	113262692	SINE|MIR|MIRb	-	chr5	113026131	113294938	STRG.44094.4	-	113026131,113028933,113043529,113049092,113053724,113063983,113068079,113071093,113082859,113085163,113101738,113104191,113122683,113143217,113218077	113028591,113029056,113048727,113049299,113053959,113064167,113068183,113071234,113084190,113085310,113102316,113104355,113122826,113218034,113294938	0.962963
ovary_female_adult_53_years	chr12	79455468	79455537	79455514	-	High_confidence	176	192	724	47.086289	7.184105	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.879834
ovary_female_adult_53_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	8	10	10	0.650363	2.921928	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.800000
ovary_female_adult_53_years	chrX	151958581	151958582	151958581	-	RAMPAGE_only	12	12	12	0.780436	3.251629	chrX	151958580	151958655	DNA|DNA|MER135	-	chrX	151953124	151959723	GABRE|ENST00000486255.1	-	151953124,151955367,151955707	151955084,151955567,151959723	1.000000
ovary_female_adult_53_years	chrX	103577210	103577211	103577210	+	High_confidence	6	8	9	0.585327	2.947703	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
ovary_female_adult_53_years	chr16	20736052	20736053	20736052	+	RAMPAGE_only	16	20	20	1.300726	3.684184	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20689047	20741238	STRG.105259.15	+	20689047,20720590	20720557,20741238	1.000000
ovary_female_adult_53_years	chr9	121313956	121314021	121314002	+	RAMPAGE_only	10	10	52	3.381888	4.743239	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
ovary_female_adult_53_years	chr2	121902487	121902490	121902489	+	High_confidence	9	16	17	1.105617	3.452820	chr2	121902488	121902606	LINE|L2|L2a	-	chr2	121902709	121944447	STRG.16084.1	+	121902709,121944333	121902989,121944447	0.764706
ovary_female_adult_53_years	chr3	31533421	31533448	31533442	+	High_confidence	3	3	16	1.040581	2.655639	chr3	31533377	31533564	LINE|L1|L1M4b	-	chr3	31533624	31617005	STT3B|ENST00000462235.5	+	31533624,31576395,31579808,31596797,31600359,31615104,31616928	31533686,31576504,31580096,31596863,31600459,31615203,31617005	0.937500
ovary_female_adult_53_years	chr1	153967482	153967496	153967486	+	High_confidence	13	15	29	1.886053	3.810081	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.758621
ovary_female_adult_53_years	chr9	128921984	128922010	128921984	-	RAMPAGE_only	39	40	161	10.470846	5.239989	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128917295	128918101	STRG.72234.1	-	128917295	128918101	0.944099
ovary_female_adult_53_years	chr2	108451103	108451104	108451103	+	RAMPAGE_only	4	4	7	0.455254	2.521641	chr2	108451073	108451151	LINE|RTE-BovB|MamRTE1	-	chr2	108449883	108472899	GCC2|ENST00000409896.1	+	108449883,108451027,108452398,108468979,108469650,108472826	108449994,108451112,108452466,108469084,108472116,108472899	0.857143
ovary_female_adult_53_years	chr7	134527596	134527597	134527596	+	High_confidence	16	17	17	1.105617	3.875000	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.941176
ovary_female_adult_53_years	chr9	2732102	2732103	2732102	-	High_confidence	6	6	8	0.520290	2.521641	chr9	2731877	2732255	LTR|ERVL-MaLR|MLT1A1	-	chr9	2731604	2732218	STRG.67741.2	-	2731604	2732218	0.500000
ovary_female_adult_53_years	chr9	39810083	39810118	39810115	-	High_confidence	5	5	27	1.755980	4.162295	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.777778
ovary_female_adult_53_years	chr1	15526456	15526465	15526456	-	High_confidence	11	11	19	1.235690	3.531631	chr1	15526347	15526477	SINE|MIR|MIR3	+	chr1	15518135	15526534	CASP9|ENST00000469637.1	-	15518135,15519880,15526190	15518395,15520001,15526534	0.578947
ovary_female_adult_53_years	chr8	133250622	133250623	133250622	-	RAMPAGE_only	15	15	20	1.300726	3.684184	chr8	133250581	133250664	SINE|MIR|MIRb	+	chr8	133246626	133254882	NDRG1|ENST00000521664.1	-	133246626,133247874,133248714,133250439,133254538	133246663,133247926,133248771,133250543,133254882	0.700000
ovary_female_adult_53_years	chr22	23705502	23705514	23705504	-	RAMPAGE_only	6	9	24	1.560871	3.882045	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.958333
ovary_female_adult_53_years	chr3	135965685	135965749	135965748	+	High_confidence	26	27	193	12.552008	6.144201	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.994819
ovary_female_adult_53_years	chr1	206052890	206052891	206052890	+	High_confidence	238	244	281	18.275203	6.057604	chr1	206052518	206053000	LTR|ERV1|LTR2B	+	chr1	206052844	206061913	STRG.8562.7	+	206052844,206061344,206061661	206060449,206061397,206061913	0.971530
ovary_female_adult_53_years	chr14	23692797	23692851	23692850	+	High_confidence	11	12	56	3.642033	4.055256	chr14	23692551	23693117	LTR|ERV1|LTR61	+	chr14	23692747	23698926	STRG.94969.1	+	23692747,23693105,23696856	23692972,23693346,23698926	0.892857
ovary_female_adult_53_years	chr4	54296697	54296820	54296697	+	RAMPAGE_only	13	15	91	5.918304	5.007791	chr4	54296613	54296722	DNA|hAT-Charlie|MER5B	-	chr4	54229096	54298247	PDGFRA|ENST00000257290.9	+	54229096,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54280315,54285370,54285840,54287429,54288798,54289008,54290312,54295124	54229415,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54280482,54285486,54285963,54287541,54288898,54289114,54290554,54298247	0.967033
ovary_female_adult_53_years	chr2	86482561	86482599	86482577	+	RAMPAGE_only	11	11	29	1.886053	3.857307	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.655172
ovary_female_adult_53_years	chr19	9140379	9140428	9140427	+	High_confidence	9	9	43	2.796561	4.682079	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.767442
ovary_female_adult_53_years	chr4	86453149	86453203	86453190	-	High_confidence	17	30	190	12.356899	5.166149	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453192	MAPK10|ENST00000361569.8	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86453029	86017375,86029287,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453192	0.868421
ovary_female_adult_53_years	chr21	29077476	29077501	29077486	+	High_confidence	10	11	25	1.625908	3.936180	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.680000
ovary_female_adult_53_years	chr14	106846262	106846267	106846262	-	High_confidence	178	180	503	32.713264	6.427213	chr14	106845982	106849095	LINE|L1|L1PBb	-	chr14	106802693	106846336	STRG.99367.4	-	106802693,106807529,106845802	106803004,106810746,106846336	0.944334
ovary_female_adult_53_years	chr8	143558019	143558020	143558019	+	High_confidence	8	8	8	0.520290	2.750000	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.500000
ovary_female_adult_53_years	chr19	1170069	1170116	1170069	+	High_confidence	3	3	21	1.365763	4.201841	chr19	1170017	1170122	LINE|L1|L1MB7	-	chr19	1170119	1170741	STRG.114669.1	+	1170119	1170741	0.714286
ovary_female_adult_53_years	chr2	159428326	159428357	159428356	-	RAMPAGE_only	14	18	47	3.056707	5.036195	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.723404
ovary_female_adult_53_years	chr4	8436023	8436026	8436025	-	High_confidence	25	47	49	3.186779	4.793431	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366711	8436344	STRG.32946.3	-	8366711,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394614,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8435922	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392360,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8436344	0.632653
ovary_female_adult_53_years	chr12	110440313	110440314	110440313	-	RAMPAGE_only	4	4	6	0.390218	2.584963	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	1.000000
ovary_female_adult_53_years	chrX	5726324	5726325	5726324	-	High_confidence	10	12	14	0.910508	2.873141	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.571429
ovary_female_adult_53_years	chr1	166850042	166850062	166850042	+	RAMPAGE_only	2	2	10	0.650363	2.725481	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.900000
ovary_female_adult_53_years	chr4	54267189	54267230	54267229	+	RAMPAGE_only	8	8	22	1.430799	3.788755	chr4	54267043	54267244	LINE|L1|L1MC1	-	chr4	54229310	54281978	PDGFRA|ENST00000509490.5	+	54229310,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54278818,54280315,54281580	54229415,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54278971,54280482,54281978	0.500000
ovary_female_adult_53_years	chr20	3795746	3795772	3795759	+	High_confidence	7	7	34	2.211235	4.680758	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.970588
ovary_female_adult_53_years	chr8	30728966	30728967	30728966	+	High_confidence	14	14	14	0.910508	3.235926	chr8	30728580	30729079	LTR|ERV1|LTR2C	+	chr8	30728821	30763322	STRG.63667.2	+	30728821,30731528,30744327,30751395,30753034,30754664,30756764,30760887,30763272	30729345,30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763322	0.642857
ovary_female_adult_53_years	chr5	139526237	139526238	139526237	+	High_confidence	159	162	190	12.356899	5.576446	chr5	139525865	139526346	LTR|ERV1|LTR2B	+	chr5	139526430	139626855	UBE2D2|ENST00000511725.5	+	139526430,139600371,139614585,139614696,139614860,139623367,139626755	139526612,139600435,139614617,139614774,139614966,139623461,139626855	0.531579
ovary_female_adult_53_years	chr11	107441600	107441602	107441601	-	RAMPAGE_only	3	5	8	0.520290	2.500000	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	1.000000
ovary_female_adult_53_years	chr1	219433087	219433088	219433087	-	RAMPAGE_only	4	4	6	0.390218	2.584963	chr1	219432838	219433267	LTR|ERVL|MER70B	-	chr1	219409754	219411879	STRG.9145.1	-	219409754,219411717	219410267,219411879	0.666667
ovary_female_adult_53_years	chr11	77571351	77571352	77571351	+	High_confidence	11	11	16	1.040581	3.500000	chr11	77570921	77571455	LTR|ERV1|LTR61	+	chr11	77571088	77575662	LOC646029|NR_130930.1	+	77571088,77571514,77574210	77571310,77571685,77575662	1.000000
ovary_female_adult_53_years	chr9	127642418	127642448	127642428	+	High_confidence	2	2	10	0.650363	2.725481	chr9	127642433	127642559	LINE|CR1|L3	+	chr9	127642342	127663258	STXBP1|ENST00000626333.1	+	127642342,127651602,127653714,127658374,127660029,127661101,127663204	127642563,127651652,127653796,127658451,127660108,127661205,127663258	0.700000
ovary_female_adult_53_years	chr1	89272843	89272887	89272859	-	High_confidence	11	12	67	4.357433	4.930367	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.910448
ovary_female_adult_53_years	chr2	47369479	47369492	47369479	+	High_confidence	3	3	18	1.170654	3.852169	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369474	47375254	EPCAM|ENST00000474691.1	+	47369474,47373462,47375233	47369581,47374048,47375254	0.500000
ovary_female_adult_53_years	chr6	140898419	140898424	140898421	-	RAMPAGE_only	5	8	15	0.975545	3.189898	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140852924	AL035446.1|ENST00000455011.1	-	140845957,140852818	140846304,140852924	0.533333
ovary_female_adult_53_years	chr1	155343321	155343346	155343321	-	RAMPAGE_only	10	11	17	1.105617	2.952820	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.941176
ovary_female_adult_53_years	chr20	34369400	34369419	34369418	+	RAMPAGE_only	6	6	14	0.910508	3.521641	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	1.000000
ovary_female_adult_53_years	chr19	9700673	9700674	9700673	-	High_confidence	9	9	9	0.585327	2.725481	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	1.000000
ovary_female_adult_53_years	chr1	174874385	174874461	174874445	+	High_confidence	5	5	29	1.886053	4.375222	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.758621
ovary_female_adult_53_years	chr14	53217918	53217926	53217918	+	High_confidence	2	2	8	0.520290	3.000000	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217890	53369501	AL365295.1|ENST00000435322.1	+	53217890,53304807,53318030,53369454	53218055,53305053,53318138,53369501	0.500000
ovary_female_adult_53_years	chr3	195688686	195688694	195688693	+	High_confidence	5	5	10	0.650363	2.947703	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688681	195708807	MUC20-OT1|ENST00000627562.2	+	195688681,195689338,195699029,195701379,195708133	195688797,195689438,195699207,195701495,195708807	0.700000
ovary_female_adult_53_years	chr22	36481331	36481353	36481334	-	High_confidence	36	37	80	5.202905	4.225051	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.937500
ovary_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	7479	7576	9173	596.578076	6.105968	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.871907
ovary_female_adult_53_years	chr1	20028406	20028516	20028515	+	High_confidence	168	197	670	43.574328	7.667494	chr1	20028464	20028814	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.577612
ovary_female_adult_53_years	chr22	23700730	23700737	23700736	-	RAMPAGE_only	6	7	10	0.650363	2.646439	chr22	23700074	23701270	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	1.000000
ovary_female_adult_53_years	chr1	19981627	19981633	19981627	-	High_confidence	18	18	33	2.146198	4.671781	chr1	19981429	19981746	LTR|Gypsy|MamGyp-int	-	chr1	19981170	19981617	STRG.926.1	-	19981170	19981617	0.606061
ovary_female_adult_53_years	chr11	93735087	93735092	93735087	-	High_confidence	2	2	7	0.455254	2.807355	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730353	93735238	TAF1D|ENST00000529435.5	-	93730353,93730676,93731149,93731752,93732243,93733086,93733349,93734624	93730447,93730712,93731216,93731799,93732291,93733121,93733419,93735238	0.857143
ovary_female_adult_53_years	chr5	109383412	109383460	109383459	-	High_confidence	8	8	16	1.040581	3.577820	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
ovary_female_adult_53_years	chr8	26366359	26366396	26366395	+	RAMPAGE_only	5	5	28	1.821017	3.767376	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	0.964286
ovary_female_adult_53_years	chr11	43881075	43881095	43881087	+	High_confidence	9	10	31	2.016126	4.280226	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.838710
ovary_female_adult_53_years	chr2	38515502	38515503	38515502	-	High_confidence	4	4	7	0.455254	2.521641	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.857143
ovary_female_adult_53_years	chr16	72073244	72073245	72073244	+	RAMPAGE_only	11	11	12	0.780436	2.845351	chr16	72072861	72073376	LTR|ERV1|LTR10B	+	chr16	72063228	72077246	HPR|ENST00000561690.1	+	72063228,72073891,72074283,72075144,72076302,72076955	72063260,72073977,72074385,72075219,72076350,72077246	0.833333
ovary_female_adult_53_years	chr2	84926018	84926044	84926037	+	High_confidence	6	6	19	1.235690	3.947703	chr2	84925969	84926070	DNA|hAT-Tip100|MER91C	-	chr2	84926176	84962933	STRG.14752.1	+	84926176,84941213,84962829	84927396,84941299,84962933	0.894737
ovary_female_adult_53_years	chr3	140572028	140572095	140572028	+	RAMPAGE_only	7	7	26	1.690944	4.176992	chr3	140571959	140572062	LINE|L2|L2b	-	chr3	139935184	140577397	CLSTN2|ENST00000458420.7	+	139935184,140175950,140403628,140404557,140421124,140448518,140459520,140466609,140532323,140546514,140556512,140558639,140562137,140562810,140563079,140563960,140566052	139935483,140176073,140403824,140404766,140421274,140448704,140459769,140466731,140532486,140546681,140556661,140558857,140562308,140562956,140563203,140564145,140577397	1.000000
ovary_female_adult_53_years	chr6	79631280	79631329	79631328	+	High_confidence	17	18	59	3.837142	5.370659	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.932203
ovary_female_adult_53_years	chr1	161206444	161206450	161206444	+	High_confidence	3	3	8	0.520290	2.750000	chr1	161206361	161206444	SINE|tRNA|LFSINE_Vert	+	chr1	161206408	161214296	STRG.6910.2	+	161206408,161209192,161209482,161209856,161210110,161210303,161210590,161212350,161213379,161213648,161213863,161214155	161206597,161209313,161209595,161209931,161210188,161210389,161210710,161212480,161213475,161213732,161213921,161214296	1.000000
ovary_female_adult_53_years	chr15	75396547	75396553	75396547	-	RAMPAGE_only	5	5	9	0.585327	2.503258	chr15	75396541	75396779	SINE|MIR|MIR	+	chr15	75369378	75451585	SIN3A|NM_015477.2	-	75369378,75375664,75380628,75381612,75384263,75389651,75392241,75394679,75396257,75400039,75400729,75401851,75407054,75409835,75410133,75411491,75412762,75414204,75422646,75430186,75451359	75372209,75375872,75380723,75381705,75384437,75389821,75392815,75394863,75396496,75400156,75400940,75401970,75407144,75409991,75410286,75411743,75413045,75414311,75422823,75430408,75451585	1.000000
ovary_female_adult_53_years	chr18	80148048	80148049	80148048	+	High_confidence	12	12	12	0.780436	2.855389	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.500000
ovary_female_adult_53_years	chr2	218287279	218287306	218287279	-	High_confidence	8	8	27	1.755980	4.315824	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.740741
ovary_female_adult_53_years	chr1	116390269	116390290	116390289	+	RAMPAGE_only	10	10	26	1.690944	3.886842	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.884615
ovary_female_adult_53_years	chr16	20706762	20706794	20706793	+	RAMPAGE_only	5	5	15	0.975545	3.640224	chr16	20706398	20706853	LINE|L1|L1M3a	+	chr16	20689047	20741238	STRG.105259.15	+	20689047,20720590	20720557,20741238	1.000000
ovary_female_adult_53_years	chr14	21020009	21020048	21020047	-	High_confidence	10	10	24	1.560871	3.447402	chr14	21020013	21020322	SINE|Alu|AluSg4	+	chr14	21017994	21020109	NDRG2|ENST00000557416.5	-	21017994,21018203,21018456,21018626,21018762,21019115,21019638,21019919	21018038,21018239,21018504,21018663,21018814,21019160,21019742,21020109	0.708333
ovary_female_adult_53_years	chrX	133662085	133662102	133662085	-	RAMPAGE_only	2	2	7	0.455254	2.521641	chrX	133662014	133662231	LINE|L2|L2b	-	chrX	133535744	133985646	GPC3|NM_001164617.1	-	133535744,133596439,133661729,133692368,133699894,133704204,133753481,133953049,133985274	133536293,133596599,133661850,133692494,133700028,133704273,133754176,133953211,133985646	0.857143
ovary_female_adult_53_years	chr6	110330069	110330118	110330117	-	RAMPAGE_only	7	7	28	1.821017	4.351823	chr6	110329832	110331376	LINE|L1|L1MD2	+	chr6	110244018	110332790	STRG.52337.2	-	110244018,110298921,110315341,110322773,110332439	110246260,110299150,110315481,110322872,110332790	0.964286
ovary_female_adult_53_years	chr6	150993580	150993633	150993580	+	High_confidence	4	5	15	0.975545	3.039149	chr6	150993332	150993611	SINE|Alu|AluSz6	-	chr6	150993364	151035013	STRG.54211.6	+	150993364,151009818,151013778,151014879,151015515,151034492	150993695,151009958,151013820,151014980,151015693,151035013	0.733333
ovary_female_adult_53_years	chr7	11192977	11192999	11192977	+	High_confidence	23	23	36	2.341307	4.558814	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.805556
ovary_female_adult_53_years	chr19	571748	571753	571752	-	High_confidence	8	15	26	1.690944	3.753270	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.884615
ovary_female_adult_53_years	chr1	19344364	19344389	19344388	-	RAMPAGE_only	15	15	44	2.861598	4.661263	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.931818
ovary_female_adult_53_years	chr1	209742592	209742617	209742592	-	High_confidence	2	2	8	0.520290	2.500000	chr1	209742384	209742599	DNA|hAT-Blackjack|MER63A	-	chr1	209661358	209742562	LOC101930114|NR_134510.1	-	209661358,209662910,209742496	209661567,209663061,209742562	0.875000
ovary_female_adult_53_years	chr9	64019185	64019199	64019197	+	RAMPAGE_only	3	4	9	0.585327	2.750000	chr9	64018820	64020467	LINE|L1|L1PB	-	chr9	64016949	64061612	FLJ43315|NR_033856.1	+	64016949,64024164,64026112,64027903,64031319,64054475,64060143	64017260,64024300,64026230,64028019,64031414,64054751,64061612	0.777778
ovary_female_adult_53_years	chr5	133089677	133089694	133089677	+	RAMPAGE_only	12	13	27	1.755980	4.060262	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.962963
ovary_female_adult_53_years	chr7	6590236	6590286	6590251	+	High_confidence	7	7	30	1.951089	4.280226	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.500000
ovary_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	849	853	853	55.475973	4.257820	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.974209
ovary_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	251	256	297	19.315784	6.452110	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.956229
ovary_female_adult_53_years	chr4	95000465	95000481	95000465	+	RAMPAGE_only	11	11	21	1.365763	3.975418	chr4	95000399	95000534	SINE|Alu|AluSc	+	chr4	94996231	95154673	BMPR1B|ENST00000512312.5	+	94996231,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547	94996384,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95154673	0.666667
ovary_female_adult_53_years	chr7	17374743	17374746	17374743	+	High_confidence	14	17	34	2.211235	4.101382	chr7	17374638	17374768	DNA|hAT-Charlie|MER5B	+	chr7	17374866	17466664	KCCAT333|ENST00000419463.1	+	17374866,17448880,17450994,17466151	17375055,17448948,17451061,17466664	0.911765
ovary_female_adult_53_years	chr8	76988336	76988337	76988336	-	RAMPAGE_only	6	7	9	0.585327	2.503258	chr8	76988253	76988288	DNA|hAT-Charlie|MER5A	-	chr8	76983639	76986527	PEX2|ENST00000518986.5	-	76983639,76986186,76986493	76984195,76986296,76986527	1.000000
ovary_female_adult_53_years	chr20	33624708	33624717	33624708	+	RAMPAGE_only	3	3	6	0.390218	2.584963	chr20	33624662	33624719	LINE|L2|L2b	+	chr20	33619564	33636662	CBFA2T2|ENST00000491618.1	+	33619564,33623114,33623772,33624763,33628349,33629718,33636639	33619606,33623296,33623854,33625017,33628435,33629914,33636662	1.000000
ovary_female_adult_53_years	chr6	35566952	35566954	35566953	-	High_confidence	36	49	53	3.446924	4.466351	chr6	35566829	35567331	LTR|ERV1|LTR10B	-	chr6	35563191	35566934	STRG.49140.1	-	35563191,35566613	35563528,35566934	0.886792
ovary_female_adult_53_years	chr11	77571438	77571470	77571438	+	High_confidence	2	2	11	0.715399	3.321928	chr11	77571455	77571917	LTR|ERV1|HERV3-int	+	chr11	77571088	77575662	LOC646029|NR_130930.1	+	77571088,77571514,77574210	77571310,77571685,77575662	0.909091
ovary_female_adult_53_years	chr10	133369979	133370015	133370008	-	RAMPAGE_only	4	4	10	0.650363	2.725481	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.900000
ovary_female_adult_53_years	chr13	98988460	98988461	98988460	-	RAMPAGE_only	91	95	100	6.503631	4.029907	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98793486	98978084	DOCK9|NM_001130048.1	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,98977783	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,98978084	0.880000
ovary_female_adult_53_years	chr8	30731746	30731752	30731751	+	RAMPAGE_only	17	17	39	2.536416	4.754378	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30728821	30763322	STRG.63667.2	+	30728821,30731528,30744327,30751395,30753034,30754664,30756764,30760887,30763272	30729345,30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763322	0.871795
ovary_female_adult_53_years	chr14	21360437	21360490	21360437	-	RAMPAGE_only	4	4	27	1.755980	4.323856	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351478	21358402	SUPT16H|ENST00000557394.5	-	21351478,21353487,21353702,21354410,21357196,21357926	21352818,21353565,21353832,21354540,21357366,21358402	0.592593
ovary_female_adult_53_years	chr2	3536839	3536899	3536839	-	High_confidence	6	6	23	1.495835	4.001823	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3533223	3536869	AC108488.1|ENST00000438482.1	-	3533223,3534112,3536723	3533848,3534255,3536869	0.565217
ovary_female_adult_53_years	chr18	54945394	54945459	54945458	-	RAMPAGE_only	4	4	12	0.780436	3.459432	chr18	54945305	54945474	SINE|MIR|MIRc	-	chr18	54901510	54942950	CCDC68|ENST00000432185.5	-	54901510,54907785,54917912,54919270,54928799,54934819,54936832,54937956,54940996,54942674	54904415,54907862,54917996,54919376,54928882,54934948,54936958,54938097,54941083,54942950	0.916667
ovary_female_adult_53_years	chr7	2870708	2870774	2870708	-	High_confidence	14	15	80	5.202905	5.556698	chr7	2870624	2870907	LTR|ERVL|LTR16B1	-	chr7	2844443	2870828	STRG.55366.1	-	2844443,2870623	2846132,2870828	0.512500
ovary_female_adult_53_years	chr3	11604455	11604458	11604455	-	High_confidence	3	3	9	0.585327	2.500000	chr3	11604225	11604413	SINE|MIR|MIR3	-	chr3	11556066	11604581	VGLL4|NM_001284391.1	-	11556066,11559331,11564796,11601832,11604323	11558827,11559455,11565019,11602022,11604581	0.777778
ovary_female_adult_53_years	chr1	116390216	116390240	116390216	+	RAMPAGE_only	4	4	10	0.650363	2.721928	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.700000
ovary_female_adult_53_years	chr6	77369144	77369167	77369166	-	RAMPAGE_only	9	15	36	2.341307	4.781036	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77151126	77273285	STRG.50794.1	-	77151126,77151818,77271339,77273026	77151280,77151974,77271493,77273285	0.555556
ovary_female_adult_53_years	chr12	7115144	7115173	7115144	+	RAMPAGE_only	2	2	10	0.650363	3.121928	chr12	7114990	7115194	LINE|L2|L2b	+	chr12	7108570	7119022	STRG.85679.1	+	7108570,7110297,7111024,7112006,7115129,7118266,7118898	7108947,7110572,7111606,7112064,7115219,7118677,7119022	0.500000
ovary_female_adult_53_years	chr3	114759268	114759277	114759276	-	High_confidence	12	13	23	1.495835	3.295357	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.608696
ovary_female_adult_53_years	chr3	52615423	52615444	52615423	-	High_confidence	6	8	17	1.105617	3.454822	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.941176
ovary_female_adult_53_years	chr1	20068966	20069007	20068968	+	RAMPAGE_only	3	5	13	0.845472	3.392747	chr1	20068973	20069258	LINE|L1|L1ME3G	+	chr1	20070207	20091168	PLA2G5|ENST00000375108.3	+	20070207,20084820,20086082,20089788,20090567	20070465,20084870,20086227,20089895,20091168	0.846154
ovary_female_adult_53_years	chr17	59620042	59620044	59620043	+	High_confidence	8	12	17	1.105617	3.616875	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.941176
ovary_female_adult_53_years	chr14	68882879	68882899	68882879	-	High_confidence	5	6	21	1.365763	3.921928	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.952381
ovary_female_adult_53_years	chr22	37855566	37855610	37855609	+	RAMPAGE_only	3	3	13	0.845472	3.251629	chr22	37855622	37855711	SINE|tRNA|LFSINE_Vert	+	chr22	37858564	37871290	EIF3L|ENST00000464790.1	+	37858564,37862968,37863271,37870175,37871199	37858740,37863038,37863345,37870347,37871290	0.692308
ovary_female_adult_53_years	chr1	153119468	153119469	153119468	-	High_confidence	244	250	331	21.527019	5.213128	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112120	153119455	STRG.6292.2	-	153112120,153119352	153112752,153119455	0.972810
ovary_female_adult_53_years	chr19	20611590	20611664	20611619	+	High_confidence	10	10	38	2.471380	4.661760	chr19	20611625	20612547	LTR|ERV1|HERV3-int	+	chr19	20611558	20615389	AC010636.1|ENST00000598116.1	+	20611558,20615058	20611855,20615389	0.605263
ovary_female_adult_53_years	chr5	1585087	1585121	1585087	-	RAMPAGE_only	3	3	9	0.585327	2.750000	chr5	1584920	1585091	LTR|ERVK|HERVK9-int	-	chr5	1577087	1594620	STRG.40159.7	-	1577087,1589246,1593112,1594394	1585133,1589365,1593284,1594620	0.888889
ovary_female_adult_53_years	chrX	103536078	103536079	103536078	-	High_confidence	29	30	42	2.731525	4.734184	chrX	103535966	103536120	SINE|MIR|MIRb	+	chrX	103532503	103536843	STRG.129470.7	-	103532503	103536843	0.642857
ovary_female_adult_53_years	chr19	12800915	12800984	12800915	-	High_confidence	2	2	12	0.780436	3.095795	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.916667
ovary_female_adult_53_years	chr11	64226142	64226180	64226158	-	High_confidence	86	92	255	16.584259	6.571040	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.964706
ovary_female_adult_53_years	chr7	80369531	80369553	80369531	+	High_confidence	7	7	15	0.975545	3.235926	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369561	80487694	STRG.58284.1	+	80369561,80486466,80487685	80369781,80486587,80487694	0.533333
ovary_female_adult_53_years	chr21	28048446	28048447	28048446	+	High_confidence	7	7	7	0.455254	2.521641	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	1.000000
ovary_female_adult_53_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	46	46	46	2.991670	4.602594	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
ovary_female_adult_53_years	chr12	9065167	9065178	9065173	+	High_confidence	9	9	30	1.951089	4.323231	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.566667
ovary_female_adult_53_years	chr4	86453308	86453331	86453313	-	High_confidence	2	2	12	0.780436	3.095795	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453325	MAPK10|ENST00000641313.1	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86354644,86453325	0.916667
ovary_female_adult_53_years	chr3	149912044	149912083	149912082	+	High_confidence	2	2	7	0.455254	2.521641	chr3	149912115	149912721	LINE|L1|L1ME2z	+	chr3	149911992	149961374	RNF13|ENST00000468289.1	+	149911992,149921133,149960739	149912083,149921227,149961374	0.857143
ovary_female_adult_53_years	chr3	134222886	134222887	134222886	-	RAMPAGE_only	11	11	11	0.715399	2.845351	chr3	134222676	134222858	SINE|MIR|MIRc	-	chr3	134157132	134250468	RYK|ENST00000460933.5	-	134157132,134159236,134175608,134175929,134177940,134183001,134188836,134191848,134195081,134202729,134207471,134209694,134211507,134222417,134250422	134158264,134159373,134175768,134176039,134178073,134183071,134188923,134191983,134195182,134202874,134207525,134209829,134211607,134222539,134250468	0.636364
ovary_female_adult_53_years	chr10	67387225	67387246	67387225	-	RAMPAGE_only	1	1	8	0.520290	2.521641	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.750000
ovary_female_adult_53_years	chr1	1721622	1721637	1721636	-	High_confidence	4	4	9	0.585327	3.000000	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.777778
ovary_female_adult_53_years	chr8	30729071	30729086	30729071	+	High_confidence	7	8	29	1.886053	4.021641	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30728821	30763322	STRG.63667.2	+	30728821,30731528,30744327,30751395,30753034,30754664,30756764,30760887,30763272	30729345,30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763322	0.896552
ovary_female_adult_53_years	chr3	64979399	64979466	64979405	+	RAMPAGE_only	3	3	14	0.910508	3.392747	chr3	64978922	64982753	LINE|L1|L1PA3	+	chr3	64685127	64982576	STRG.25964.4	+	64685127,64799464,64867167,64972172,64973811	64685338,64799745,64867257,64972296,64982576	0.785714
ovary_female_adult_53_years	chr14	106845850	106845934	106845858	-	High_confidence	39	44	149	9.690410	5.976326	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106802693	106846336	STRG.99367.4	-	106802693,106807529,106845802	106803004,106810746,106846336	0.818792
ovary_female_adult_53_years	chr2	231401309	231401341	231401334	+	RAMPAGE_only	5	5	21	1.365763	3.921928	chr2	231401206	231405702	LTR|ERV1|HERVE-int	+	chr2	231395542	231408999	STRG.20921.1	+	231395542,231397730,231406023	231395814,231404514,231408999	0.857143
ovary_female_adult_53_years	chr6	36540256	36540277	36540256	-	High_confidence	3	3	7	0.455254	2.584963	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36502714	36540298	STRG.49216.3	-	36502714,36507499,36515337,36521733,36524340,36525590,36540071	36506644,36507602,36517840,36521817,36524463,36525642,36540298	0.714286
ovary_female_adult_53_years	chr3	33838256	33838257	33838256	+	RAMPAGE_only	10	10	12	0.780436	3.251629	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.833333
ovary_female_adult_53_years	chr1	227142944	227142957	227142956	-	RAMPAGE_only	5	6	10	0.650363	2.641604	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.600000
ovary_female_adult_53_years	chr3	140570312	140570443	140570396	+	RAMPAGE_only	17	17	136	8.844938	4.451564	chr3	140570212	140570546	DNA|TcMar-Tigger|MER2	+	chr3	139935184	140577397	CLSTN2|ENST00000458420.7	+	139935184,140175950,140403628,140404557,140421124,140448518,140459520,140466609,140532323,140546514,140556512,140558639,140562137,140562810,140563079,140563960,140566052	139935483,140176073,140403824,140404766,140421274,140448704,140459769,140466731,140532486,140546681,140556661,140558857,140562308,140562956,140563203,140564145,140577397	0.992647
ovary_female_adult_53_years	chrX	73841853	73841877	73841876	-	High_confidence	8	9	27	1.755980	3.923856	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.777778
ovary_female_adult_53_years	chr17	50271485	50271488	50271485	+	High_confidence	5	5	10	0.650363	3.121928	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
ovary_female_adult_53_years	chr11	77571594	77571615	77571614	+	High_confidence	3	3	8	0.520290	2.521641	chr11	77571455	77571917	LTR|ERV1|HERV3-int	+	chr11	77571088	77575662	LOC646029|NR_130930.1	+	77571088,77571514,77574210	77571310,77571685,77575662	0.875000
ovary_female_adult_53_years	chr20	45833293	45833310	45833307	-	High_confidence	14	16	41	2.666489	4.296338	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.975610
ovary_female_adult_53_years	chr3	143043273	143043274	143043273	+	RAMPAGE_only	4	6	6	0.390218	2.584963	chr3	143043314	143043694	LINE|L2|L2b	+	chr3	143036082	143056846	U2SURP|ENST00000467348.1	+	143036082,143037178,143038107,143038893,143043116,143050938,143053675,143056311	143036104,143037335,143038203,143038960,143043276,143051049,143053794,143056846	1.000000
ovary_female_adult_53_years	chr12	91179064	91179080	91179064	-	High_confidence	2	2	10	0.650363	2.921928	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.800000
ovary_female_adult_53_years	chrX	90458582	90458606	90458595	+	High_confidence	3	3	11	0.715399	3.321928	chrX	90458046	90458603	LTR|ERV1|LTR4	-	chrX	90458616	90466971	STRG.129069.1	+	90458616	90466971	0.909091
ovary_female_adult_53_years	chr8	30729172	30729253	30729186	+	High_confidence	16	17	101	6.568667	5.819872	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30728821	30763322	STRG.63667.2	+	30728821,30731528,30744327,30751395,30753034,30754664,30756764,30760887,30763272	30729345,30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763322	0.762376
ovary_female_adult_53_years	chr15	45369702	45369703	45369702	-	High_confidence	16	16	22	1.430799	3.880180	chr15	45369640	45369710	LINE|L2|L2b	+	chr15	45364823	45369707	GATM|ENST00000558916.1	-	45364823,45366045,45366370,45368069,45369325	45364860,45366210,45366508,45368260,45369707	0.954545
ovary_female_adult_53_years	chr8	53523890	53523896	53523890	-	High_confidence	4	4	11	0.715399	3.121928	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.909091
ovary_female_adult_53_years	chr8	136489429	136489430	136489429	+	High_confidence	4	7	7	0.455254	2.521641	chr8	136489231	136489726	LTR|ERV1|MER61F	+	chr8	136489447	136529876	LINC02055|ENST00000523232.1	+	136489447,136515965,136519147,136529794	136489502,136516300,136519239,136529876	0.714286
ovary_female_adult_53_years	chr17	43508424	43508454	43508424	+	RAMPAGE_only	5	5	16	1.040581	3.323231	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	0.937500
ovary_female_adult_53_years	chr7	102933597	102933601	102933600	-	High_confidence	4	6	10	0.650363	2.721928	chr7	102933431	102933604	SINE|MIR|MIRb	-	chr7	102926282	102933735	FBXL13|ENST00000468216.1	-	102926282,102931880,102933320	102926374,102931933,102933735	0.500000
ovary_female_adult_53_years	chr16	15006394	15006395	15006394	+	RAMPAGE_only	7	7	9	0.585327	2.725481	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	14997747	15038323	PDXDC1|ENST00000450288.3	+	14997747,14998339,15006393,15008778,15009680,15016128,15017119,15017320,15018839,15022703,15026642,15028877,15029950,15031734,15032860,15033277,15034285,15034456,15035448,15036015	14997826,14998405,15006583,15008847,15009759,15016213,15017168,15017422,15018965,15022754,15026706,15028966,15030056,15031906,15032979,15033399,15034378,15034553,15035553,15038323	1.000000
ovary_female_adult_53_years	chr16	20680169	20680252	20680251	+	RAMPAGE_only	5	5	29	1.886053	4.664498	chr16	20678043	20681722	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.965517
ovary_female_adult_53_years	chr14	34536109	34536214	34536109	-	High_confidence	11	11	60	3.902179	4.855030	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.816667
ovary_female_adult_53_years	chr1	59511730	59511737	59511730	+	High_confidence	6	7	10	0.650363	2.947703	chr1	59511674	59511751	DNA|hAT-Tip100|MER91C	+	chr1	59512315	59660423	FGGY|ENST00000485720.1	+	59512315,59554123,59607802,59625987,59660218	59512439,59554227,59607910,59626049,59660423	0.500000
ovary_female_adult_53_years	chr19	44914313	44914322	44914321	+	High_confidence	7	7	14	0.910508	3.235926	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	1.000000
ovary_female_adult_53_years	chr8	53523957	53523964	53523963	-	High_confidence	13	13	22	1.430799	3.913977	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.818182
ovary_female_adult_53_years	chr8	98883804	98883824	98883823	-	High_confidence	5	5	11	0.715399	3.277613	chr8	98883703	98883915	LTR|ERVL-MaLR|MLT1O	-	chr8	98875256	98883795	STK3|ENST00000523567.1	-	98875256,98883646	98875694,98883795	0.636364
ovary_female_adult_53_years	chr10	5768234	5768381	5768371	-	RAMPAGE_only	8	8	102	6.633704	5.657247	chr10	5768371	5769005	LINE|L1|L1MB3	+	chr10	5765228	5769389	GDI2|ENST00000479928.1	-	5765228,5766240,5768212	5766152,5766638,5769389	0.960784
ovary_female_adult_53_years	chr8	12437601	12437620	12437601	+	High_confidence	3	4	8	0.520290	2.750000	chr8	12437528	12437843	LINE|L2|L2c	-	chr8	12437012	12551049	LOC100506990|NR_040091.1	+	12437012,12438163,12440968,12444755,12497582,12530942,12549486	12437710,12438511,12441061,12444894,12497849,12531031,12551049	0.750000
ovary_female_adult_53_years	chr5	172854678	172854697	172854696	+	RAMPAGE_only	3	3	7	0.455254	2.521641	chr5	172854401	172854991	DNA|TcMar-Tigger|MER6A	+	chr5	172834274	172952685	ERGIC1|ENST00000393784.7	+	172834274,172888698,172897001,172909666,172914713,172924004,172926508,172932435,172935187,172950708	172834433,172888760,172897074,172909761,172914838,172924109,172926569,172932536,172935310,172952685	0.857143
ovary_female_adult_53_years	chr2	189571723	189571745	189571723	-	RAMPAGE_only	5	5	19	1.235690	3.725481	chr2	189571695	189571755	LINE|CR1|L3	+	chr2	189560589	189580811	SLC40A1|NM_014585.5	-	189560589,189563583,189565353,189571714,189572845,189575160,189579812,189580417	189562191,189564225,189565599,189571841,189572961,189575320,189579880,189580811	0.894737
ovary_female_adult_53_years	chr11	3380960	3380961	3380960	+	RAMPAGE_only	13	13	13	0.845472	3.700440	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3383461	3397239	TSSC2|ENST00000526488.5	+	3383461,3384166,3384898,3393085,3395712,3397088	3383546,3384284,3384968,3393159,3395888,3397239	0.538462
ovary_female_adult_53_years	chr12	8681673	8681677	8681676	+	High_confidence	37	37	56	3.642033	5.390273	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.553571
ovary_female_adult_53_years	chr19	52616794	52616821	52616801	-	RAMPAGE_only	2	2	9	0.585327	2.750000	chr19	52616561	52616863	SINE|Alu|AluSp	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	0.888889
ovary_female_adult_53_years	chr3	134485443	134485471	134485443	-	High_confidence	6	6	38	2.471380	4.468726	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.500000
ovary_female_adult_53_years	chr17	2975647	2975682	2975660	+	High_confidence	11	14	84	5.463050	5.194435	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975523	2998442	STRG.107743.1	+	2975523,2980286,2981194,2984982,2991296,2995336,2998220	2975771,2980365,2981248,2985066,2991397,2995466,2998442	0.869048
ovary_female_adult_53_years	chr8	53483760	53483804	53483803	-	High_confidence	6	8	48	3.121743	5.209963	chr8	53483380	53485723	LTR|ERVL|HERVL18-int	+	chr8	53408025	53483890	STRG.64066.1	-	53408025,53408432,53408698,53421065,53422222,53483586	53408326,53408579,53408788,53421153,53422294,53483890	0.562500
ovary_female_adult_53_years	chr14	81170412	81170420	81170413	-	High_confidence	19	31	53	3.446924	4.871220	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.830189
ovary_female_adult_53_years	chr3	123922821	123922847	123922821	-	RAMPAGE_only	3	3	7	0.455254	2.807355	chr3	123921865	123924954	LINE|L1|L1MA7	+	chr3	123913716	123957083	CCDC14|ENST00000485727.5	-	123913716,123931101,123931307,123933672,123944848,123946802,123948690,123948895,123952594	123915718,123931234,123931526,123933755,123944990,123947319,123948785,123949132,123957083	1.000000
ovary_female_adult_53_years	chr1	206059643	206059644	206059643	+	RAMPAGE_only	40	41	41	2.666489	4.634184	chr1	206059615	206059756	SINE|MIR|MIR3	+	chr1	206052844	206061913	STRG.8562.7	+	206052844,206061344,206061661	206060449,206061397,206061913	0.975610
ovary_female_adult_53_years	chrX	115647970	115647997	115647987	+	RAMPAGE_only	3	3	10	0.650363	2.947703	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.900000
ovary_female_adult_53_years	chr10	68749224	68749258	68749257	+	RAMPAGE_only	6	6	19	1.235690	3.050302	chr10	68749287	68749410	LINE|L1|L1MB3	+	chr10	68721254	68791355	CCAR1|ENST00000540210.5	+	68721254,68722454,68736875,68737844,68740628,68742375,68747160,68747373,68749135,68749523,68753851,68754713,68755369,68757293,68761006,68765887,68771205,68772987,68786135,68786545,68787926,68788142,68789709,68791206	68721288,68722577,68737048,68737889,68740661,68742569,68747275,68747566,68749265,68749685,68754077,68754827,68755536,68757377,68761192,68766079,68771445,68773099,68786218,68786692,68788047,68788328,68789915,68791355	1.000000
ovary_female_adult_53_years	chr5	113149870	113149879	113149870	-	RAMPAGE_only	1	1	8	0.520290	2.807355	chr5	113149690	113150736	LINE|L1|HAL1M8	+	chr5	113101733	113203317	MCC|ENST00000506605.6	-	113101733,113104191,113122683,113143217,113151308,113203236	113101945,113104355,113122826,113143360,113151422,113203317	0.625000
ovary_female_adult_53_years	chr14	91462210	91462234	91462210	-	High_confidence	3	3	10	0.650363	3.169925	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.700000
ovary_female_adult_53_years	chrX	73837450	73837494	73837450	-	RAMPAGE_only	14	14	45	2.926634	3.689561	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.977778
ovary_female_adult_53_years	chr6	131892820	131892852	131892820	+	RAMPAGE_only	4	4	14	0.910508	3.039149	chr6	131891757	131893146	LINE|L1|L1MDa	-	chr6	131808019	131895155	ENPP1|ENST00000647893.1	+	131808019,131847775,131849989,131851141,131852174,131854925,131858667,131860386,131861594,131864505,131864865,131868017,131869357,131872069,131872922,131874267,131875775,131876991,131878541,131879879,131882344,131883693,131884930,131886561,131890340	131808275,131847848,131850106,131851267,131852235,131855023,131858747,131860506,131861704,131864571,131864938,131868126,131869489,131872101,131873050,131874337,131875863,131877161,131878593,131880034,131882474,131883774,131885063,131886724,131895155	1.000000
ovary_female_adult_53_years	chr1	100268215	100268281	100268280	+	RAMPAGE_only	5	5	20	1.300726	3.384184	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266288	100292769	STRG.4910.3	+	100266288,100266523,100268073,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100292769	1.000000
ovary_female_adult_53_years	chr8	12553153	12553173	12553153	+	RAMPAGE_only	2	2	11	0.715399	2.521928	chr8	12552811	12553874	LINE|L1|L1M2	+	chr8	12436982	12559871	STRG.63034.2	+	12436982,12438163,12440968,12444755,12530942,12552089	12437710,12438511,12441061,12444894,12531031,12559871	0.727273
ovary_female_adult_53_years	chrX	123611611	123611643	123611642	-	RAMPAGE_only	3	3	8	0.520290	2.500000	chrX	123611621	123612702	LINE|L1|L1MB5	+	chrX	123603448	123613554	THOC2|ENST00000455053.5	-	123603448,123610917,123611439,123613398	123603748,123610957,123611516,123613554	0.750000
ovary_female_adult_53_years	chr11	58578102	58578133	58578132	-	High_confidence	15	28	92	5.983341	5.771565	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58527038	58578166	STRG.80447.3	-	58527038,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58576733	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.869565
ovary_female_adult_53_years	chrX	100703104	100703142	100703141	-	RAMPAGE_only	10	11	35	2.276271	4.614997	chrX	100703070	100703372	SINE|Alu|AluJb	+	chrX	100674490	100731510	SYTL4|ENST00000372989.5	-	100674490,100678390,100679312,100681226,100685989,100686678,100687066,100688350,100689855,100690074,100690562,100691107,100700896,100701219,100701457,100701927,100703092,100704810,100731417	100676176,100678599,100679412,100681335,100686151,100686781,100687245,100688443,100689959,100690165,100690638,100691209,100700999,100701329,100701673,100702107,100703185,100704886,100731510	0.971429
ovary_female_adult_53_years	chr1	155834639	155834640	155834639	-	RAMPAGE_only	13	13	13	0.845472	3.392747	chr1	155834525	155834826	LTR|ERV1|MER41B	+	chr1	155672559	155853810	STRG.6670.9	-	155672559,155675009,155676547,155679408,155777621,155783985,155785333,155795049,155804948,155813633,155814329,155815804,155816211,155820605,155821473,155822285,155826836,155853275	155672731,155675096,155676746,155679512,155777820,155784089,155785374,155795151,155805141,155813804,155814449,155815900,155816262,155820656,155821548,155822476,155827028,155853810	0.615385
ovary_female_adult_53_years	chr15	34588450	34588453	34588450	-	RAMPAGE_only	9	10	15	0.975545	2.699514	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34404969	34583651	STRG.100087.6	-	34404969,34406673,34407523,34435382,34437397,34583543	34405055,34406870,34407735,34435471,34437442,34583651	0.733333
ovary_female_adult_53_years	chr7	11192786	11192803	11192800	+	High_confidence	6	7	22	1.430799	3.788755	chr7	11192822	11192883	LINE|L1|L1MA1	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.590909
ovary_female_adult_53_years	chr12	53464803	53464829	53464815	+	RAMPAGE_only	5	5	17	1.105617	3.500000	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479614	STRG.88177.13	+	53462513,53464759,53465931,53467220,53468779,53471637,53479405	53462567,53464852,53465973,53467843,53468832,53471807,53479614	0.823529
ovary_female_adult_53_years	chr10	84142691	84142726	84142725	+	RAMPAGE_only	3	3	12	0.780436	2.855389	chr10	84142771	84142861	DNA|hAT-Charlie|Charlie4z	+	chr10	84139439	84153245	GHITM|ENST00000372134.5	+	84139439,84141461,84142654,84143994,84144874,84148729,84150054,84150708,84152263	84139593,84141629,84142754,84144106,84145016,84148838,84150243,84150880,84153245	0.916667
ovary_female_adult_53_years	chr2	11534044	11534049	11534044	+	High_confidence	21	21	44	2.861598	4.945772	chr2	11533857	11534477	DNA|TcMar-Tigger|Tigger9b	-	chr2	11534115	11642786	GREB1|NM_014668.3	+	11534115,11556453,11562462,11566479,11576352,11578296,11580703,11585160,11585761,11588745,11592775,11595250,11596110,11597780,11598679,11600799,11602405,11610687,11612494,11615090,11616630,11618287,11620904,11625153,11626961,11629947,11631908,11632888,11634130,11635269,11637715,11638670,11640290	11534254,11556771,11562582,11566656,11576535,11578431,11580832,11585274,11585905,11588931,11593126,11595379,11596239,11597978,11598860,11600995,11602542,11611027,11612610,11615290,11616720,11618919,11621007,11625312,11627104,11630109,11632113,11633063,11634349,11635405,11637916,11638809,11642786	0.636364
ovary_female_adult_53_years	chr2	240022172	240022173	240022172	-	RAMPAGE_only	8	8	8	0.520290	3.000000	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
ovary_female_adult_53_years	chr19	21440639	21440677	21440674	-	RAMPAGE_only	21	25	123	7.999466	6.082770	chr19	21440180	21440667	LTR|ERV1|HERV3-int	-	chr19	21430555	21449823	STRG.116281.4	-	21430555,21440414,21445716	21433947,21444133,21449823	0.934959
ovary_female_adult_53_years	chr10	72355126	72355146	72355145	-	High_confidence	3	3	7	0.455254	2.521641	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
ovary_female_adult_53_years	chr18	36857048	36857071	36857070	+	RAMPAGE_only	11	11	23	1.495835	4.368523	chr18	36855917	36857773	LINE|L1|L1ME1	-	chr18	36832673	37229885	KIAA1328|ENST00000591619.5	+	36832673,36834202,36835233,36844207,36885556,36959307,37066889,37160199,37172972,37222016,37229568	36833388,36834355,36835376,36844302,36885672,36959435,37067545,37160381,37173081,37225283,37229885	0.739130
ovary_female_adult_53_years	chr2	9554953	9554965	9554953	-	High_confidence	3	3	9	0.585327	2.500000	chr2	9554869	9555063	DNA|hAT-Tip100?|MamRep1879	-	chr2	9488636	9554729	ADAM17|ENST00000648548.1	-	9488636,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152,9551474,9554708	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526264,9527954,9535922,9536828,9543285,9551757,9554729	0.555556
ovary_female_adult_53_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	22	22	22	1.430799	3.754442	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
ovary_female_adult_53_years	chr16	20676161	20676162	20676161	-	High_confidence	9	9	10	0.650363	2.947703	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.700000
ovary_female_adult_53_years	chr4	22599817	22599818	22599817	+	High_confidence	28	32	39	2.536416	4.406821	chr4	22599726	22600102	LTR|ERV1|Harlequin-int	+	chr4	22599626	22600376	STRG.34046.1	+	22599626	22600376	0.589744
ovary_female_adult_53_years	chr14	67908272	67908289	67908272	+	High_confidence	7	7	28	1.821017	4.085055	chr14	67908121	67908285	DNA|hAT-Charlie|MER5A	-	chr14	67908304	68468250	RAD51B|ENST00000468382.5	+	67908304,68291883,68411423,68468171	67908853,68291980,68411527,68468250	0.892857
ovary_female_adult_53_years	chr5	140655869	140655989	140655988	+	RAMPAGE_only	12	16	93	6.048377	5.020251	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.946237
ovary_female_adult_53_years	chr14	23692994	23693038	23693013	+	High_confidence	26	27	64	4.162324	4.597678	chr14	23692551	23693117	LTR|ERV1|LTR61	+	chr14	23692747	23698926	STRG.94969.1	+	23692747,23693105,23696856	23692972,23693346,23698926	0.921875
ovary_female_adult_53_years	chr20	35713469	35713490	35713470	-	High_confidence	6	9	16	1.040581	3.452820	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	1.000000
ovary_female_adult_53_years	chr15	57451529	57451565	57451552	+	RAMPAGE_only	5	5	16	1.040581	2.827820	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
ovary_female_adult_53_years	chr21	8817798	8817799	8817798	+	RAMPAGE_only	7	8	8	0.520290	2.521641	chr21	8817416	8819072	LINE|L1|L1PB	-	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	0.875000
ovary_female_adult_53_years	chr13	52236308	52236326	52236325	-	RAMPAGE_only	3	3	8	0.520290	2.521641	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.750000
ovary_female_adult_53_years	chr19	49086519	49086547	49086520	+	High_confidence	15	22	49	3.186779	4.915431	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.897959
ovary_female_adult_53_years	chr16	15798662	15798665	15798664	-	RAMPAGE_only	8	10	13	0.845472	3.084963	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.769231
ovary_female_adult_53_years	chr7	107580245	107580267	107580264	+	High_confidence	369	371	1846	120.057029	6.695046	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.943120
ovary_female_adult_53_years	chr8	30731664	30731697	30731696	+	RAMPAGE_only	5	5	19	1.235690	3.308271	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30728821	30763322	STRG.63667.2	+	30728821,30731528,30744327,30751395,30753034,30754664,30756764,30760887,30763272	30729345,30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763322	0.894737
ovary_female_adult_53_years	chr5	140700445	140700446	140700445	+	High_confidence	928	1016	1300	84.547204	5.069902	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.983077
ovary_female_adult_53_years	chr14	102235448	102235481	102235480	-	High_confidence	11	11	36	2.341307	3.569532	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.888889
ovary_female_adult_53_years	chr2	46903957	46904026	46903977	-	RAMPAGE_only	3	3	20	1.300726	3.300559	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.950000
ovary_female_adult_53_years	chr9	129488705	129488857	129488856	+	High_confidence	37	37	248	16.129005	5.667381	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503425	STRG.72414.2	+	129488911,129493418,129502396,129503322	129489299,129493595,129503139,129503425	0.955645
ovary_female_adult_53_years	chr13	24580593	24580613	24580612	+	High_confidence	3	3	8	0.520290	3.000000	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580672	24586534	STRG.92093.1	+	24580672,24581660,24583501,24586461	24580890,24581722,24583582,24586534	0.625000
ovary_female_adult_53_years	chr3	31533526	31533593	31533526	+	High_confidence	4	5	19	1.235690	3.321104	chr3	31533377	31533564	LINE|L1|L1M4b	-	chr3	31533624	31617005	STT3B|ENST00000462235.5	+	31533624,31576395,31579808,31596797,31600359,31615104,31616928	31533686,31576504,31580096,31596863,31600459,31615203,31617005	0.684211
ovary_female_adult_53_years	chr16	65053820	65053883	65053820	-	RAMPAGE_only	12	12	67	4.357433	5.007130	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.746269
ovary_female_adult_53_years	chr7	76109087	76109088	76109087	-	High_confidence	5	5	8	0.520290	2.750000	chr7	76108929	76109272	LTR|ERV1|MER61A	-	chr7	76108252	76109074	STRG.58744.1	-	76108252,76108434	76108309,76109074	0.875000
ovary_female_adult_53_years	chr1	238486008	238486043	238486008	-	High_confidence	4	5	17	1.105617	3.381580	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480383	238486017	LINC01139|NR_015407.1	-	238480383,238485784	238481681,238486017	0.529412
ovary_female_adult_53_years	chr8	38825359	38825367	38825360	+	RAMPAGE_only	3	5	11	0.715399	3.095795	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.818182
ovary_female_adult_53_years	chr5	176943337	176943380	176943337	-	RAMPAGE_only	3	3	10	0.650363	2.947703	chr5	176943235	176943320	DNA|hAT-Charlie|Charlie10	-	chr5	176905192	176968889	STRG.46785.8	-	176905192,176906010,176908522,176911310,176943334,176951473,176955958,176958092,176968554	176905492,176907177,176908694,176911389,176943488,176951577,176956035,176958154,176968889	0.700000
ovary_female_adult_53_years	chr3	180870518	180870522	180870518	-	High_confidence	41	57	101	6.568667	5.725574	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180704708	180870510	STRG.31681.1	-	180704708,180711192,180711309,180725514,180737492,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180737814,180782124,180810470,180847624,180870510	0.930693
ovary_female_adult_53_years	chr14	64087849	64087850	64087849	+	RAMPAGE_only	12	16	16	1.040581	3.452820	chr14	64087899	64088180	SINE|Alu|AluSz	+	chr14	64075614	64226430	SYNE2|ENST00000394768.6	+	64075614,64078465,64080455,64081442,64087418,64087670,64089573,64090865,64093348,64097948,64098746,64101931,64107490,64113340,64119426,64120926,64122011,64122285,64125078,64126326,64126597,64128451,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64165284,64167232,64167494,64168876,64170227,64174943,64177357,64186423,64188549,64190070,64202800,64208757,64209427,64209941,64211960,64212810,64214193,64216247,64218397,64219207,64220436,64221575,64223188,64224460,64224995,64225318	64076100,64078606,64080638,64081580,64087487,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64122427,64125210,64126479,64126807,64128553,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64165410,64167387,64167639,64168971,64170462,64175138,64177483,64186579,64188708,64190237,64202963,64208945,64209578,64210124,64212098,64213005,64214470,64216387,64218512,64219410,64220637,64221704,64223380,64224547,64225045,64226430	1.000000
ovary_female_adult_53_years	chr1	176162936	176162963	176162936	-	RAMPAGE_only	5	5	12	0.780436	3.277613	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.666667
ovary_female_adult_53_years	chr1	1388719	1388720	1388719	-	High_confidence	7	7	8	0.520290	2.521641	chr1	1388612	1388794	SINE|Alu|AluSx1	+	chr1	1386494	1388713	CCNL2|ENST00000463260.5	-	1386494,1387776,1387953	1387582,1387869,1388713	0.875000
ovary_female_adult_53_years	chr11	126427406	126427407	126427406	+	High_confidence	236	250	262	17.039513	6.749722	chr11	126427257	126427974	LINE|L2|L2b	-	chr11	126427090	126429798	STRG.84943.1	+	126427090	126429798	0.984733
ovary_female_adult_53_years	chr6	27367612	27367613	27367612	-	RAMPAGE_only	5	5	8	0.520290	3.000000	chr6	27367435	27367797	LTR|ERVL-MaLR|MSTA	-	chr6	27357822	27371525	ZNF204P|NR_002722.2	-	27357822,27363178,27367516,27370135	27360221,27363302,27367612,27371525	1.000000
ovary_female_adult_53_years	chr16	20681139	20681350	20681251	+	RAMPAGE_only	20	21	157	10.210701	5.612566	chr16	20678043	20681722	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.974522
ovary_female_adult_53_years	chr3	164450928	164450929	164450928	+	High_confidence	10	13	13	0.845472	3.238901	chr3	164449656	164452200	LINE|L1|L1PA15	-	chr3	164451257	164620928	STRG.30334.1	+	164451257,164608991,164619324	164451535,164609068,164620928	0.615385
ovary_female_adult_53_years	chr20	33678519	33678520	33678519	-	RAMPAGE_only	5	5	7	0.455254	2.521641	chr20	33678403	33678530	SINE|MIR|MIR3	+	chr20	33674940	33680417	STRG.120326.22	-	33674940,33677104,33677425,33678200,33679754,33680325	33676979,33677330,33677540,33678353,33679974,33680417	1.000000
ovary_female_adult_53_years	chr1	44689083	44689112	44689111	+	High_confidence	8	9	26	1.690944	4.213661	chr1	44689053	44689362	SINE|Alu|AluSx1	-	chr1	44688265	44725438	STRG.2355.1	+	44688265,44689675,44697101,44698062,44700922,44704088,44724121,44724319,44725290	44688319,44689903,44697170,44698229,44701119,44704173,44724244,44725217,44725438	0.884615
ovary_female_adult_53_years	chr3	125836549	125836590	125836549	-	RAMPAGE_only	2	3	7	0.455254	2.521641	chr3	125835663	125838487	LTR|ERV1|HERVS71-int	+	chr3	125827126	125857128	STRG.28542.2	-	125827126,125848229,125856813	125827455,125848447,125857128	0.714286
ovary_female_adult_53_years	chr7	87040212	87040215	87040212	-	High_confidence	9	10	24	1.560871	3.522055	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	87039771	87040615	STRG.59059.1	-	87039771	87040615	0.541667
ovary_female_adult_53_years	chr17	4143196	4143215	4143199	+	High_confidence	52	52	115	7.479176	5.515475	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	1.000000
ovary_female_adult_53_years	chr4	1241444	1241458	1241457	-	RAMPAGE_only	3	3	7	0.455254	2.807355	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1248740	CTBP1|ENST00000513420.1	-	1225437,1228198,1238182,1241324,1248660	1225566,1228343,1238337,1241519,1248740	0.857143
ovary_female_adult_53_years	chr1	155478144	155478188	155478144	-	RAMPAGE_only	3	3	13	0.845472	3.238901	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
ovary_female_adult_53_years	chr8	12565383	12565412	12565383	+	RAMPAGE_only	3	3	9	0.585327	2.947703	chr8	12565086	12565544	LTR|ERVK|HERVK-int	+	chr8	12560213	12571183	STRG.63034.5	+	12560213,12560746	12560724,12571183	0.777778
ovary_female_adult_53_years	chr1	35145376	35145426	35145392	-	RAMPAGE_only	3	3	21	1.365763	3.281373	chr1	35144755	35145857	LTR|ERV1|HERV3-int	-	chr1	35141514	35146435	AL590434.1|ENST00000641402.1	-	35141514,35144866,35146298	35143033,35145096,35146435	0.761905
ovary_female_adult_53_years	chr4	184537549	184537596	184537566	-	High_confidence	7	7	32	2.081162	4.202820	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184536527	184537198	STRG.39687.1	-	184536527	184537198	0.843750
ovary_female_adult_53_years	chr1	54413473	54413493	54413492	-	High_confidence	7	7	13	0.845472	3.546594	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54412707	54413466	SSBP3|ENST00000448572.1	-	54412707,54413080,54413355	54412877,54413253,54413466	0.769231
ovary_female_adult_53_years	chr1	35146357	35146430	35146390	-	High_confidence	7	7	24	1.560871	4.251629	chr1	35145875	35146564	LTR|ERV1|HERV3-int	-	chr1	35141514	35146382	STRG.1679.2	-	35141514,35146298	35143033,35146382	0.500000
ovary_female_adult_53_years	chr8	12565317	12565329	12565328	+	RAMPAGE_only	2	3	7	0.455254	2.584963	chr8	12565086	12565544	LTR|ERVK|HERVK-int	+	chr8	12560213	12571183	STRG.63034.5	+	12560213,12560746	12560724,12571183	0.714286
ovary_female_adult_53_years	chr7	122074742	122074798	122074742	-	RAMPAGE_only	5	5	24	1.560871	3.886842	chr7	122074094	122074821	LINE|L1|L1MB8	-	chr7	122073543	122144290	AASS|NM_005763.3	-	122073543,122077837,122078861,122079596,122081499,122086011,122091702,122092842,122093047,122098449,122098744,122101370,122101620,122113117,122113597,122115073,122116632,122116878,122118306,122118562,122126374,122129360,122133516,122144160	122076607,122078014,122078950,122079712,122081595,122086179,122091843,122092951,122093158,122098576,122098866,122101438,122101680,122113229,122113720,122115222,122116760,122116957,122118453,122118630,122126459,122129537,122133741,122144290	1.000000
ovary_female_adult_53_years	chr7	106269495	106269501	106269495	-	RAMPAGE_only	5	5	11	0.715399	2.921928	chr7	106269454	106269610	LINE|RTE-X|L4_B_Mam	+	chr7	106248284	106284887	STRG.60553.3	-	106248284,106253016,106254363,106261587,106263391,106268463,106269153,106274945,106277022,106284827	106251193,106253151,106254504,106261707,106263617,106268600,106272658,106275049,106277179,106284887	0.909091
ovary_female_adult_53_years	chr9	70600991	70601079	70601044	-	High_confidence	7	7	41	2.666489	4.199132	chr9	70601037	70601290	SINE|MIR|MIRc	+	chr9	70600569	70601454	STRG.69973.1	-	70600569	70601454	0.853659
ovary_female_adult_53_years	chr11	17282813	17282825	17282813	+	RAMPAGE_only	2	3	8	0.520290	2.521641	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.875000
ovary_female_adult_53_years	chrX	16712879	16712959	16712889	-	High_confidence	17	17	91	5.918304	5.710769	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.912088
ovary_female_adult_53_years	chr12	111841704	111841705	111841704	-	High_confidence	4	4	7	0.455254	2.584963	chr12	111841557	111841731	SINE|MIR|MIRb	+	chr12	111839776	111841710	MAPKAPK5-AS1|ENST00000590479.5	-	111839776,111840332,111841326,111841683	111840003,111840477,111841470,111841710	0.571429
ovary_female_adult_53_years	chr10	67387423	67387468	67387423	-	RAMPAGE_only	6	6	38	2.471380	4.391490	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.578947
ovary_female_adult_53_years	chr12	15001791	15001828	15001825	+	High_confidence	2	2	12	0.780436	3.277613	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.500000
ovary_female_adult_53_years	chr9	33068838	33068885	33068838	-	RAMPAGE_only	4	4	18	1.170654	3.734522	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.944444
ovary_female_adult_53_years	chr20	35713417	35713418	35713417	-	High_confidence	5	6	8	0.520290	2.807355	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.750000
ovary_female_adult_53_years	chr13	27445105	27445108	27445105	-	RAMPAGE_only	5	5	12	0.780436	3.095795	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.916667
ovary_female_adult_53_years	chr1	160951425	160951492	160951448	-	RAMPAGE_only	3	3	15	0.975545	3.521641	chr1	160951407	160951550	LTR|ERVL|LTR40b	+	chr1	160945024	160954799	ITLN2|ENST00000368029.3	-	160945024,160947928,160950045,160950552,160951042,160952619,160954386,160954726	160945292,160948032,160950166,160950711,160951290,160952733,160954450,160954799	0.800000
ovary_female_adult_53_years	chr16	14511345	14511374	14511345	-	RAMPAGE_only	3	3	10	0.650363	2.921928	chr16	14511277	14511448	SINE|tRNA-RTE|MamSINE1	+	chr16	14446956	14501689	PARN|ENST00000564882.5	-	14446956,14482637,14501552	14447081,14482827,14501689	0.900000
ovary_female_adult_53_years	chr7	7484222	7484242	7484222	-	RAMPAGE_only	3	3	9	0.585327	2.750000	chr7	7483997	7484719	LINE|L1|L1MEd	+	chr7	7440625	7511129	STRG.55562.1	-	7440625,7443584,7444417,7452318,7453439,7456043,7474600,7477111,7489388,7490577,7506013,7507116,7511090	7440861,7443653,7444489,7452387,7453508,7456112,7474669,7477180,7489457,7490646,7506067,7507161,7511129	0.777778
ovary_female_adult_53_years	chr17	47067498	47067534	47067498	-	High_confidence	117	123	418	27.185178	5.827571	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.940191
ovary_female_adult_53_years	chr14	50756723	50756808	50756807	-	RAMPAGE_only	3	4	24	1.560871	3.803509	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.958333
ovary_female_adult_53_years	chr4	75127239	75127272	75127271	-	RAMPAGE_only	4	4	13	0.845472	3.546594	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.846154
ovary_female_adult_53_years	chr5	14653390	14653391	14653390	-	High_confidence	93	94	94	6.113413	4.954180	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.978723
ovary_female_adult_53_years	chr18	55892920	55892993	55892972	+	High_confidence	7	7	34	2.211235	4.150159	chr18	55887412	55893439	LINE|L1|L1PA3	-	chr18	55892988	55893846	STRG.113814.1	+	55892988	55893846	0.882353
ovary_female_adult_53_years	chr18	8139951	8139971	8139951	-	RAMPAGE_only	10	10	16	1.040581	2.606239	chr18	8138870	8140000	LINE|L2|L2a	+	chr18	8134958	8135276	STRG.112461.1	-	8134958	8135276	0.875000
ovary_female_adult_53_years	chr12	10363706	10363707	10363706	+	High_confidence	11	11	11	0.715399	3.277613	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363670	10374515	STRG.85848.1	+	10363670,10374034	10364033,10374515	0.636364
ovary_female_adult_53_years	chr14	106844864	106844906	106844905	+	High_confidence	7	9	28	1.821017	3.824539	chr14	106836775	106845293	LTR|ERV1|HERV3-int	-	chr14	106844889	106845503	STRG.99375.1	+	106844889	106845503	0.535714
ovary_female_adult_53_years	chr1	21227164	21227213	21227164	-	RAMPAGE_only	2	2	13	0.845472	3.584963	chr1	21227023	21227146	SINE|Alu|AluJr4	-	chr1	21218583	21279549	ECE1|ENST00000357071.8	-	21218583,21221746,21225249,21227158,21227930,21233557,21235849,21236745,21238133,21244988,21247220,21255946,21257524,21258692,21260270,21272698,21279190	21220131,21221842,21225440,21227226,21228041,21233661,21235927,21236844,21238244,21245103,21247363,21256138,21257590,21258839,21260392,21272911,21279549	0.692308
ovary_female_adult_53_years	chr11	57568209	57568213	57568212	-	High_confidence	4	4	8	0.520290	2.807355	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	0.875000
ovary_female_adult_53_years	chr5	40982049	40982617	40982408	+	RAMPAGE_only	31	35	539	35.054571	6.553856	chr5	40982142	40982442	SINE|Alu|AluSx1	-	chr5	40909496	40982939	C7|NM_000587.2	+	40909496,40928579,40931063,40934324,40936337,40937551,40945197,40947601,40949903,40955386,40958032,40959448,40962084,40964740,40972402,40976749,40979724,40981391	40909616,40928635,40931139,40934466,40936485,40937690,40945368,40947845,40950014,40955553,40958261,40959620,40962172,40964873,40972594,40976840,40979909,40982939	0.985158
ovary_female_adult_53_years	chr8	12522791	12522814	12522813	+	RAMPAGE_only	4	4	9	0.585327	2.500000	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12560213	12571183	STRG.63034.5	+	12560213,12560746	12560724,12571183	0.666667
ovary_female_adult_53_years	chr16	20679147	20679397	20679200	+	RAMPAGE_only	11	14	183	11.901645	6.449504	chr16	20678043	20681722	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.928962
ovary_female_adult_53_years	chr1	51403425	51403453	51403425	-	RAMPAGE_only	4	4	15	0.975545	2.923231	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.933333
ovary_female_adult_53_years	chr5	151158498	151158506	151158498	-	High_confidence	7	7	19	1.235690	3.836592	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.842105
ovary_female_adult_53_years	chrX	106176589	106176624	106176589	+	RAMPAGE_only	4	5	23	1.495835	3.447262	chrX	106176529	106176619	LINE|L1|L1ME4c	-	chrX	106168304	106208955	STRG.129883.5	+	106168304,106171011,106205218	106168366,106204170,106208955	1.000000
ovary_female_adult_53_years	chr10	93431431	93431480	93431479	-	RAMPAGE_only	2	2	10	0.650363	2.947703	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.700000
ovary_female_adult_53_years	chr16	760924	760925	760924	+	High_confidence	5	5	7	0.455254	2.807355	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	1.000000
ovary_female_adult_53_years	chr18	9588091	9588121	9588111	-	RAMPAGE_only	2	2	10	0.650363	2.947703	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9561982	9595061	STRG.112483.4	-	9561982,9562921,9563377,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9593767,9595017	9562075,9563046,9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9593874,9595061	0.700000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	8523728	8523763	8523750	-	RAMPAGE_only	2	4	10	0.584157	2.725481	chr9	8523662	8523760	DNA|TcMar-Tigger|Tigger19b	-	chr9	8317403	8733894	PTPRD|ENST00000486161.5	-	8317403,8319830,8331581,8338921,8340342,8341089,8341692,8375935,8376606,8389231,8404536,8436591,8449724,8454579,8460410,8465465,8470994,8484118,8485226,8504260,8507300,8517847,8521276,8523512,8524924,8526626,8527344,8528590,8633316,8636698,8733779	8317942,8319966,8331736,8339047,8340469,8341268,8341978,8376090,8376726,8389407,8404660,8436689,8449837,8454591,8460571,8465675,8471085,8484378,8485324,8504405,8507434,8518429,8521546,8523524,8525035,8526644,8527353,8528779,8633458,8636844,8733894	0.800000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	4329136	4329146	4329136	-	RAMPAGE_only	2	2	7	0.408910	2.584963	chr18	4328319	4329812	LINE|L1|L1ME1	-	chr18	3708463	4455266	MSTRG.10734.14	-	3708463,3729134,3742334,3814058,3879111,4005115,4151179,4369675	3708501,3729375,3742512,3814273,3880140,4005201,4369583,4455266	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	9140381	9140422	9140421	+	High_confidence	21	21	112	6.542561	5.471513	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.875000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	130693321	130693336	130693335	+	High_confidence	3	4	10	0.584157	2.947703	chr2	130693150	130693434	SINE|Alu|AluY	+	chr2	130693281	130696388	FAR2P3|ENST00000434289.1	+	130693281,130696341	130693796,130696388	0.700000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	65181222	65181233	65181222	+	High_confidence	5	5	14	0.817820	3.238901	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.928571
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	47221734	47221818	47221734	+	RAMPAGE_only	2	2	12	0.700989	3.251629	chr15	47221559	47221975	DNA|hAT-Charlie|Charlie4a	+	chr15	47187832	47227926	MSTRG.7446.1	+	47187832	47227926	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	133063641	133063666	133063641	+	RAMPAGE_only	2	3	8	0.467326	2.521641	chr3	133062752	133063838	LINE|L2|L2	-	chr3	133038401	133379926	MSTRG.16431.3	+	133038401,133045901,133057475,133134640,133379751	133038435,133057425,133120955,133229351,133379926	0.875000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	6054548	6054607	6054548	-	RAMPAGE_only	3	3	23	1.343562	3.118275	chr7	6054207	6054503	SINE|Alu|AluSx1	-	chr7	6022246	6059229	EIF2AK1|NM_001134335.1	-	6022246,6026727,6028614,6028917,6037423,6038559,6040891,6042932,6044561,6046070,6046991,6048806,6049911,6054545,6058965	6024801,6026961,6028697,6029032,6037524,6038671,6041219,6042990,6044661,6046151,6047091,6048844,6050045,6054704,6059229	0.913043
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	117877394	117877417	117877416	-	High_confidence	4	4	13	0.759404	3.085055	chr11	117877415	117877598	SINE|MIR|MIRb	+	chr11	117838234	117877430	FXYD6|ENST00000524841.5	-	117838234,117839780,117840236,117841147,117841790,117841989,117842718,117877298	117838277,117839830,117840368,117841184,117841865,117842028,117842781,117877430	0.615385
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	36104527	36104553	36104552	-	RAMPAGE_only	3	3	7	0.408910	2.521641	chr13	36104278	36104550	LINE|L2|L2c	-	chr13	36056490	36131306	MSTRG.5877.12	-	36056490,36074506,36125761,36131113	36074468,36112215,36126156,36131306	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	227142956	227142988	227142956	-	RAMPAGE_only	11	12	28	1.635640	4.351823	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.607143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	94691071	94691096	94691071	+	RAMPAGE_only	3	3	12	0.700989	3.459432	chr5	94691104	94691211	LINE|Penelope|Penelope1_Vert	+	chr5	94678398	94695871	SLF1|ENST00000450932.2	+	94678398,94686572,94688505,94689472,94691563,94692073,94694830	94678955,94686718,94688669,94689606,94691656,94692256,94695871	0.750000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	116085461	116085477	116085461	+	High_confidence	3	3	8	0.467326	2.521641	chr5	116085484	116085794	DNA|hAT-Charlie|MER113	+	chr5	116085461	116293290	COMMD10|NM_001308080.1	+	116085461,116087496,116091078,116092544,116134067,116291516,116292450	116085606,116087587,116091189,116092700,116134178,116291576,116293290	0.625000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	20423688	20423704	20423703	-	RAMPAGE_only	9	11	19	1.109899	3.281036	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.842105
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	58578137	58578145	58578144	-	High_confidence	4	4	11	0.642573	3.095795	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.818182
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	102449836	102449856	102449844	+	High_confidence	3	3	10	0.584157	2.646439	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449852	102456293	RPARP-AS1|ENST00000492465.2	+	102449852,102450186,102451398,102452089,102455336	102450022,102450360,102451555,102452187,102456293	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	50976424	50976465	50976424	-	RAMPAGE_only	3	3	16	0.934652	3.625000	chr14	50976329	50976565	LINE|L2|L2b	+	chr14	50975260	51095704	TRIM9|NM_015163.5	-	50975260,50979386,50981799,50998049,51000682,51009079,51010383,51022834,51025264,51094117	50977353,50979549,50982103,50998188,51000840,51009233,51010494,51022957,51025360,51095704	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	104812518	104812561	104812518	-	RAMPAGE_only	9	9	19	1.109899	2.821888	chr2	104812167	104812579	LINE|L1|L1ME3A	+	chr2	104807576	104851453	MSTRG.13164.10	-	104807576,104812708,104851311	104812618,104812812,104851453	0.947368
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	99906528	99906551	99906545	-	High_confidence	2	2	8	0.467326	2.807355	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.500000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	123061189	123061328	123061256	-	High_confidence	30	35	348	20.328670	6.313079	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.945402
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	85682853	85682864	85682862	-	High_confidence	4	5	10	0.584157	2.725481	chr11	85682520	85682971	DNA|hAT-Tip100|MER115	+	chr11	85660167	85682863	CREBZF|ENST00000531515.5	-	85660167,85662388,85663523,85682716	85660597,85662457,85663601,85682863	0.500000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	4404249	4404263	4404252	-	RAMPAGE_only	4	4	11	0.642573	2.846439	chr18	4404239	4404525	DNA|TcMar-Tigger|Tigger19a	-	chr18	3708463	4455266	MSTRG.10734.14	-	3708463,3729134,3742334,3814058,3879111,4005115,4151179,4369675	3708501,3729375,3742512,3814273,3880140,4005201,4369583,4455266	0.909091
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	79631242	79631329	79631273	+	High_confidence	29	30	158	9.229684	5.623967	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.930380
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	15006433	15006455	15006454	+	RAMPAGE_only	3	3	11	0.642573	2.845351	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	14997747	15038323	PDXDC1|ENST00000450288.3	+	14997747,14998339,15006393,15008778,15009680,15016128,15017119,15017320,15018839,15022703,15026642,15028877,15029950,15031734,15032860,15033277,15034285,15034456,15035448,15036015	14997826,14998405,15006583,15008847,15009759,15016213,15017168,15017422,15018965,15022754,15026706,15028966,15030056,15031906,15032979,15033399,15034378,15034553,15035553,15038323	0.727273
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	71423195	71423207	71423195	+	RAMPAGE_only	3	4	16	0.934652	4.000000	chr2	71423244	71423287	DNA|hAT-Ac|OldhAT1	+	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	149752594	149752662	149752661	-	High_confidence	13	25	94	5.491078	4.312266	chr3	149752625	149752732	LINE|L2|L2a	-	chr3	149738469	149752499	COMMD2|ENST00000473414.5	-	149738469,149750677,149751402,149752209,149752377	149741718,149750851,149751485,149752287,149752499	0.946809
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	90637876	90637913	90637876	+	RAMPAGE_only	6	7	20	1.168314	3.546439	chr5	90637833	90637939	LINE|CR1|X6A_LINE	-	chr5	90640717	90708909	ADGRV1|ENST00000640403.1	+	90640717,90642635,90642855,90643802,90644705,90645967,90647497,90651603,90652345,90653220,90657904,90672545,90674053,90675242,90676079,90679548,90681314,90683585,90685779,90689860,90690796,90692604,90693889,90696936,90703664,90704388,90705399,90706230,90708815	90640868,90642762,90643041,90643983,90644869,90646091,90647764,90651730,90652563,90653952,90658278,90672722,90674234,90675445,90676209,90679629,90681454,90684195,90685995,90690076,90691041,90692786,90694701,90697146,90703795,90704488,90705579,90706394,90708909	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	199392765	199392774	199392765	-	RAMPAGE_only	4	5	19	1.109899	3.326360	chr2	199392607	199392848	SINE|MIR|MIRc	+	chr2	199368609	199456088	MSTRG.13804.12	-	199368609,199380363,199381693,199407419,199433337,199434056,199441435	199368707,199380487,199407396,199419896,199433931,199441375,199456088	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	9263835	9263847	9263842	+	RAMPAGE_only	3	3	8	0.467326	2.521641	chr18	9263819	9263900	DNA|hAT-Ac|OldhAT1	+	chr18	9216779	9283759	MSTRG.10780.22	+	9216779,9221851,9239476,9254210,9257167,9263789,9275523,9279548,9280940	9216900,9221999,9239556,9257146,9258931,9263888,9275667,9279644,9283759	0.875000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	33838256	33838257	33838256	+	RAMPAGE_only	4	4	7	0.408910	2.584963	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.714286
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	73713594	73713608	73713607	-	High_confidence	4	5	9	0.525741	2.750000	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	0.888889
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	13543834	13543985	13543834	-	RAMPAGE_only	8	8	67	3.913853	5.608714	chr12	13542496	13545457	LINE|L2|L2a	+	chr12	13537336	13980363	GRIN2B|ENST00000609686.3	-	13537336,13567024,13569829,13571803,13608602,13611724,13615113,13615492,13616454,13675744,13753316,13865797,13979927	13564639,13567263,13570017,13571964,13608832,13611850,13615267,13615664,13616657,13675859,13753915,13866226,13980363	0.985075
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	6346989	6347070	6347069	+	RAMPAGE_only	6	6	22	1.285146	3.880180	chr16	6346847	6347263	LTR|ERV1|MER110A	-	chr16	6336185	6466934	MSTRG.8339.1	+	6336185,6450863	6450741,6466934	0.954545
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	111911611	111911613	111911612	+	High_confidence	21	40	43	2.511876	4.543943	chr3	111911655	111911757	DNA|hAT-Ac|OldhAT1	+	chr3	111911609	111976465	PHLDB2|ENST00000495180.1	+	111911609,111913318,111919071,111920281,111932268,111939474,111940534,111945267,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111911724,111913702,111919215,111920419,111932397,111939630,111940645,111945357,111954029,111962312,111966703,111967824,111969909,111973817,111976465	0.860465
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	7290450	7290483	7290450	+	RAMPAGE_only	3	3	12	0.700989	2.913977	chr16	7290424	7290537	LINE|L2|L2c	+	chr16	7273234	7292036	MSTRG.8351.1	+	7273234	7292036	0.916667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	70700091	70700124	70700123	-	High_confidence	3	3	9	0.525741	3.000000	chr15	70699992	70700076	SINE|MIR|MIRb	-	chr15	70671877	70699666	UACA|ENST00000560523.5	-	70671877,70676492,70677107,70678098,70679607,70682757,70684264,70687539,70687749,70690453,70691298,70695016,70699526	70672001,70676591,70677140,70678206,70679676,70682795,70684446,70687646,70687820,70690511,70691363,70695105,70699666	0.555556
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	65053803	65053814	65053813	-	RAMPAGE_only	13	16	22	1.285146	3.341446	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.500000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	68182087	68182095	68182087	+	RAMPAGE_only	2	2	7	0.408910	2.584963	chr3	68181924	68182211	SINE|Alu|AluJb	+	chr3	68127864	68329137	MSTRG.16090.4	+	68127864,68305435	68305409,68329137	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	13544077	13544491	13544198	-	RAMPAGE_only	7	11	177	10.339582	6.549361	chr12	13542496	13545457	LINE|L2|L2a	+	chr12	13537336	13980363	GRIN2B|ENST00000609686.3	-	13537336,13567024,13569829,13571803,13608602,13611724,13615113,13615492,13616454,13675744,13753316,13865797,13979927	13564639,13567263,13570017,13571964,13608832,13611850,13615267,13615664,13616657,13675859,13753915,13866226,13980363	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	85038582	85038631	85038630	+	RAMPAGE_only	3	3	10	0.584157	3.169925	chr3	85038588	85038728	SINE|MIR|MIR	+	chr3	85013891	85216241	MSTRG.16139.1	+	85013891,85028974	85028892,85216241	0.900000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	99773350	99773386	99773350	+	High_confidence	4	4	24	1.401977	4.136842	chr14	99773172	99773361	DNA|hAT-Charlie|Charlie18a	-	chr14	99773703	99865611	EML1|ENST00000556199.1	+	99773703,99850859,99865513	99774013,99851035,99865611	0.875000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	84317695	84317717	84317695	+	RAMPAGE_only	4	4	15	0.876236	3.093069	chr8	84317657	84317738	LTR|ERVL-MaLR|MLT1L	-	chr8	84184940	84529464	MSTRG.22085.11	+	84184940,84287374,84529298	84287318,84346150,84529464	0.933333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	95857636	95857637	95857636	-	RAMPAGE_only	5	6	7	0.408910	2.521641	chr2	95857528	95858276	LTR|ERV1|MER4E	+	chr2	95852289	95859929	ANKRD36C|ENST00000488721.5	-	95852289,95855265,95857308,95859860	95853861,95856180,95857492,95859929	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	213230510	213230528	213230527	+	RAMPAGE_only	3	3	7	0.408910	2.521641	chr1	213230560	213230856	SINE|Alu|AluSq2	+	chr1	213072937	213274773	RPS6KC1|ENST00000490299.5	+	213072937,213077695,213104453,213129526,213167857,213176399,213230496,213232122,213240701,213242568,213261557,213262720,213272523	213072986,213077816,213104569,213129889,213167973,213176492,213230544,213232255,213242297,213242658,213261640,213262816,213274773	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	64989955	64990047	64990022	-	RAMPAGE_only	2	3	20	1.168314	4.021928	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	50737332	50737347	50737332	+	RAMPAGE_only	3	3	9	0.525741	3.000000	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50719628	50751004	LUC7L3|ENST00000508482.5	+	50719628,50740305,50741101,50741656,50743705,50744651,50745719,50746541,50750500,50750723	50719831,50740345,50741246,50741731,50743810,50744813,50746003,50746702,50750641,50751004	0.555556
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	64226142	64226209	64226158	-	High_confidence	24	26	165	9.638594	6.035125	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.987879
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	4143199	4143215	4143199	+	High_confidence	48	48	121	7.068302	4.298230	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.950413
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	49495743	49495744	49495743	+	High_confidence	6	6	8	0.467326	2.500000	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495664	49518060	PHF11|ENST00000481509.5	+	49495664,49513058,49518017	49496095,49513166,49518060	0.500000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	41871799	41871820	41871799	-	RAMPAGE_only	3	3	11	0.642573	3.277613	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.727273
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	10480189	10480190	10480189	+	RAMPAGE_only	6	6	6	0.350494	2.584963	chr8	10480066	10480222	LINE|L2|L2c	-	chr8	10477198	10489666	MSTRG.21598.18	+	10477198,10477760,10480138,10485172	10477283,10477898,10483294,10489666	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	122788956	122788977	122788976	+	High_confidence	3	5	12	0.700989	2.913977	chr6	122788977	122789115	LTR|ERV1|PrimLTR79	+	chr6	122789048	122809720	SMPDL3A|NM_006714.4	+	122789048,122795676,122796823,122801309,122803663,122804908,122806232,122809090	122789458,122795890,122796968,122801406,122803833,122805089,122806357,122809720	0.916667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	55352726	55352758	55352757	+	RAMPAGE_only	3	3	11	0.642573	2.721928	chr14	55352765	55352941	DNA|TcMar-Mariner|MARNA	+	chr14	55271302	55353609	FBXO34|ENST00000313833.4	+	55271302,55350380	55271537,55353609	0.636364
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	175891546	175891588	175891546	-	RAMPAGE_only	5	5	15	0.876236	3.324863	chr4	175890999	175891614	LTR|ERV1|MER90a	+	chr4	175651826	175872730	GPM6A|ENST00000512610.5	-	175651826,175673679,175701574,175872662	175651987,175673836,175701767,175872730	0.600000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	171700171	171700213	171700171	+	RAMPAGE_only	2	2	8	0.467326	2.750000	chr2	171699976	171700410	LTR|ERVL-MaLR|MLT1F1	-	chr2	171687791	171715376	MSTRG.13607.16	+	171687791,171690146,171692776,171712766,171715327	171687873,171690263,171707377,171712826,171715376	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	103129616	103129644	103129616	+	High_confidence	4	4	11	0.642573	3.095795	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	0.727273
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	106682443	106682459	106682458	-	RAMPAGE_only	3	3	7	0.408910	2.584963	chr11	106682331	106682490	DNA|hAT-Charlie|MER5B	+	chr11	106674011	107018445	GUCY1A2|NM_001256424.1	-	106674011,106708511,106746550,106776438,106809992,106939459,106978618,106986069,107017752	106687756,106708666,106746643,106776582,106810478,106940178,106978740,106986131,107018445	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	1655376	1655422	1655421	-	RAMPAGE_only	4	4	19	1.109899	3.794653	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	0.947368
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	74232475	74232498	74232497	-	RAMPAGE_only	7	7	22	1.285146	3.390805	chrX	74232348	74232626	SINE|Alu|AluJo	+	chrX	74209975	74293472	MSTRG.23841.12	-	74209975,74218620,74280930,74281701,74293351	74218577,74280494,74281085,74281848,74293472	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	94435437	94435448	94435445	-	RAMPAGE_only	2	2	7	0.408910	2.584963	chr12	94435233	94435447	LTR|ERV1|MER39	+	chr12	94308285	94412595	CEP83|ENST00000397807.6	-	94308285,94309917,94312913,94312930,94331699,94333481,94335588,94367793,94368056,94369921,94375885,94378790,94400849,94403169,94411696,94412317	94308917,94310107,94312929,94313017,94331829,94333639,94335664,94367943,94368201,94370036,94376017,94379042,94400981,94403262,94411847,94412595	0.714286
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	81170413	81170433	81170422	-	High_confidence	16	16	99	5.783156	5.185823	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.868687
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	152412488	152412498	152412488	-	High_confidence	7	7	14	0.817820	3.238901	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.928571
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	168555358	168555469	168555468	-	RAMPAGE_only	10	10	68	3.972269	4.453797	chr5	168555251	168555542	SINE|Alu|AluSx	-	chr5	168548494	168579600	PANK3|ENST00000239231.6	-	168548494,168559031,168561392,168563888,168566012,168568645,168579255	168557621,168559157,168561516,168564065,168566266,168568998,168579600	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	66502611	66502741	66502611	-	High_confidence	44	44	512	29.908848	6.462660	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.902344
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	3607922	3607974	3607973	-	RAMPAGE_only	4	6	16	0.934652	2.858459	chrX	3607875	3608180	SINE|Alu|AluJb	-	chrX	3604369	3713608	PRKX|ENST00000262848.5	-	3604369,3612176,3615814,3621258,3626418,3641851,3655148,3674597,3713087	3608945,3612325,3615892,3621316,3626514,3641971,3655412,3674766,3713608	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	40378922	40378939	40378922	-	RAMPAGE_only	3	4	7	0.408910	2.807355	chr2	40378810	40379122	LINE|L2|L2a	+	chr2	40325813	40452008	MSTRG.12675.14	-	40325813,40416895,40446414,40451903	40416807,40430304,40446648,40452008	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	1421692	1421765	1421707	-	RAMPAGE_only	7	7	51	2.979202	4.616066	chr17	1421673	1421739	LINE|L2|L2b	-	chr17	1420688	1456223	CRK|ENST00000398970.5	-	1420688,1436789,1455876	1423650,1437155,1456223	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	2242922	2242923	2242922	+	High_confidence	6	6	6	0.350494	2.584963	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	104763740	104763756	104763755	+	High_confidence	12	13	38	2.219797	4.627987	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	0.894737
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	145736007	145736023	145736022	-	High_confidence	3	5	7	0.408910	2.521641	chr6	145735975	145736071	SINE|MIR|MIR3	+	chr6	145382534	145735281	EPM2A|ENST00000638717.1	-	145382534,145502521,145635244,145686121,145735197	145384097,145502575,145635486,145686296,145735281	0.571429
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	101550461	101550474	101550473	+	High_confidence	4	4	8	0.467326	2.750000	chrX	101550258	101550488	LINE|L1|L1M5	+	chrX	101550530	101554700	ARMCX1|ENST00000372829.7	+	101550530,101550970,101551568,101552808	101550660,101551024,101551633,101554700	0.875000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	68204538	68204605	68204538	+	RAMPAGE_only	3	3	28	1.635640	3.824863	chr3	68204275	68204630	LTR|ERVL-MaLR|MLT1K	-	chr3	68127864	68329137	MSTRG.16090.4	+	68127864,68305435	68305409,68329137	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	52309599	52309662	52309599	-	RAMPAGE_only	4	4	18	1.051483	3.191612	chr15	52309557	52309687	SINE|MIR|MIRc	+	chr15	52307285	52528880	MYO5A|ENST00000356338.10	-	52307285,52314122,52317047,52319059,52321358,52323354,52327851,52330352,52336462,52340195,52346360,52348817,52351253,52353604,52353870,52359967,52364553,52367030,52370168,52372123,52375303,52376346,52379624,52379821,52383090,52384160,52387828,52389237,52391929,52396315,52397200,52405286,52407291,52408058,52410332,52416144,52425829,52428397,52433174,52528779	52313848,52314203,52317222,52319342,52321509,52323444,52328006,52330499,52336556,52340394,52346461,52348826,52351481,52353658,52354014,52360081,52364702,52367124,52370417,52372363,52375460,52376558,52379733,52379908,52383188,52384322,52387912,52389363,52392070,52396397,52397466,52405393,52407399,52408140,52410476,52416301,52425974,52428569,52433285,52528880	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	15657883	15657884	15657883	+	RAMPAGE_only	9	10	11	0.642573	3.095795	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.818182
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	91462198	91462216	91462209	-	High_confidence	3	3	12	0.700989	2.913977	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.750000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	25929955	25929985	25929956	-	RAMPAGE_only	3	5	14	0.817820	3.039149	chr2	25929616	25929915	SINE|Alu|AluSx1	-	chr2	25926595	25982497	KIF3C|ENST00000264712.7	-	25926595,25929304,25929954,25951788,25954266,25955540,25956342,25980372	25929071,25929477,25930063,25951905,25954385,25955663,25956444,25982497	0.785714
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	119909069	119909115	119909100	-	RAMPAGE_only	2	2	11	0.642573	3.121928	chr3	119909009	119909310	SINE|Alu|AluSz	-	chr3	119837975	120094417	MSTRG.16291.6	-	119837975,119841718,119863418,119876412,119905754,119916043,119923372,119947267,120002045,120093346	119841619,119843353,119863605,119876508,119912810,119916174,119923483,119947351,120002239,120094417	0.909091
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	181282498	181282524	181282523	+	RAMPAGE_only	2	2	7	0.408910	2.584963	chr3	181282319	181282636	DNA|hAT-Charlie|Charlie23a	-	chr3	181175168	181290361	MSTRG.16781.26	+	181175168,181175513,181181870,181255931,181261429,181288511	181175267,181181718,181255660,181260937,181288440,181290361	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	27331602	27331787	27331633	+	High_confidence	42	42	435	25.410838	6.211442	chr22	27331341	27331854	LTR|ERVL|LTR33	-	chr22	27331786	27379265	AL020994.2|ENST00000413244.1	+	27331786,27335157,27336096,27379185	27331938,27335330,27336262,27379265	0.871264
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	40407704	40407833	40407712	-	RAMPAGE_only	6	7	44	2.570292	4.199407	chr2	40407665	40407767	LINE|L2|L2b	+	chr2	40396844	40430271	MSTRG.12675.15	-	40396844,40416972	40416815,40430271	0.931818
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	96979198	96979433	96979339	-	RAMPAGE_only	10	10	166	9.697009	5.730533	chr7	96979316	96979617	SINE|Alu|AluSz	+	chr7	96978467	97004298	MSTRG.20989.9	-	96978467,97003276	96979591,97004298	0.945783
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	104506287	104506337	104506287	+	RAMPAGE_only	4	4	20	1.168314	3.408695	chr2	104506225	104506290	SINE|MIR|MIRb	-	chr2	104434361	104512757	MSTRG.13159.2	+	104434361,104505865,104512042	104434523,104507406,104512757	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	181240685	181240719	181240718	+	RAMPAGE_only	2	3	7	0.408910	2.584963	chr3	181240629	181240788	LTR?|LTR?|MamRep605	+	chr3	181175168	181290361	MSTRG.16781.26	+	181175168,181175513,181181870,181255931,181261429,181288511	181175267,181181718,181255660,181260937,181288440,181290361	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	46243246	46243294	46243267	-	RAMPAGE_only	3	3	17	0.993067	3.410417	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.882353
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	191245199	191245219	191245218	+	High_confidence	6	6	10	0.584157	2.947703	chr2	191245108	191245343	LINE|L1|L1M4b	+	chr2	191245184	191346274	MYO1B|ENST00000418908.5	+	191245184,191276886,191296110,191329934,191341460,191346235	191245257,191277030,191296226,191330029,191341565,191346274	0.600000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	55534404	55534442	55534441	+	RAMPAGE_only	9	10	20	1.168314	3.260828	chr8	55534363	55534674	SINE|Alu|AluY	-	chr8	55102388	55542054	XKR4|ENST00000327381.6	+	55102388,55357677,55523280	55103294,55357877,55542054	0.900000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	102393055	102393216	102393148	-	RAMPAGE_only	7	7	64	3.738606	5.034676	chr13	102392937	102393359	LINE|L2|L2c	+	chr13	102297269	102400040	MSTRG.6190.3	-	102297269,102374682	102374644,102400040	0.984375
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	77129436	77129456	77129455	+	RAMPAGE_only	2	2	7	0.408910	2.584963	chr3	77129290	77130575	DNA|TcMar-Mariner|HSMAR1	-	chr3	77039885	77164739	MSTRG.16113.8	+	77039885,77098013,77164659	77040846,77164386,77164739	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	40954504	40954517	40954504	+	High_confidence	2	2	6	0.350494	2.584963	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954710	41141048	LOC644919|NR_109758.1	+	40954710,40962789,40974339,41140833	40954952,40962842,40974390,41141048	0.666667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	159428332	159428385	159428356	-	RAMPAGE_only	6	7	32	1.869303	4.523231	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159400598	159419867	BAZ2B|ENST00000482501.5	-	159400598,159404848,159405021,159412334,159419779	159400664,159404910,159405114,159412545,159419867	0.531250
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	158173024	158173025	158173024	-	High_confidence	5	5	8	0.467326	2.521641	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.625000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	4176983	4176984	4176983	-	RAMPAGE_only	6	6	8	0.467326	2.807355	chr18	4176699	4177331	LTR|ERVL|LTR33C	+	chr18	3708463	4455266	MSTRG.10734.14	-	3708463,3729134,3742334,3814058,3879111,4005115,4151179,4369675	3708501,3729375,3742512,3814273,3880140,4005201,4369583,4455266	0.875000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	49086546	49086547	49086546	+	High_confidence	5	5	7	0.408910	2.584963	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.714286
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	2521985	2522023	2522005	-	High_confidence	2	2	11	0.642573	2.521928	chr9	2515633	2521964	LINE|L1|L1HS	-	chr9	2503279	2522019	VLDLR-AS1|ENST00000447278.1	-	2503279,2506358,2521902	2503403,2506540,2522019	0.909091
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	196593892	196593966	196593892	-	High_confidence	5	6	28	1.635640	3.981662	chr2	196593879	196593974	SINE|MIR|MIRc	+	chr2	196199350	196593692	HECW2|ENST00000644978.1	-	196199350,196215864,196217007,196220038,196220794,196222210,196225771,196228101,196240448,196242083,196253919,196257822,196271192,196274020,196278527,196292564,196306487,196307129,196307934,196317273,196318551,196320338,196322477,196324979,196329574,196334423,196343656,196433131,196593507	196201388,196215977,196217093,196220153,196220941,196222340,196225870,196228254,196240562,196242204,196254029,196257906,196271289,196274123,196278662,196292750,196306612,196307233,196308085,196317369,196319904,196320439,196322620,196325149,196329650,196334518,196343764,196433458,196593692	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	2867850	2867879	2867850	+	High_confidence	5	5	12	0.700989	3.584963	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.916667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	49867876	49867909	49867884	-	High_confidence	3	3	15	0.876236	3.664498	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49861203	49867886	PNKP|ENST00000322344.7	-	49861203,49861448,49861607,49861771,49862043,49862184,49862370,49862537,49862689,49863688,49863963,49864178,49864323,49865126,49866398,49867053,49867468	49861365,49861510,49861695,49861881,49862105,49862281,49862463,49862608,49862738,49863760,49864071,49864236,49864403,49865426,49866445,49867217,49867886	0.800000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	69719429	69719430	69719429	+	RAMPAGE_only	7	8	8	0.467326	2.500000	chr7	69719364	69719528	LINE|CR1|L3b	+	chr7	69632589	69806181	MSTRG.20802.8	+	69632589,69640209	69640184,69806181	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	84259105	84259175	84259127	+	RAMPAGE_only	4	4	21	1.226730	3.630413	chr8	84259133	84259332	LINE|CR1|L3b	+	chr8	84184940	84529464	MSTRG.22085.11	+	84184940,84287374,84529298	84287318,84346150,84529464	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	30374139	30374172	30374168	+	RAMPAGE_only	5	6	19	1.109899	3.086049	chr7	30373967	30374254	SINE|Alu|AluSx	+	chr7	30285585	30376569	MSTRG.20564.3	+	30285585,30289873,30323641,30355727,30362376,30366034	30289807,30307047,30323737,30355833,30362456,30376569	0.947368
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	109383422	109383504	109383499	-	High_confidence	5	9	58	3.388112	4.624380	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	8697182	8697216	8697215	+	High_confidence	9	9	36	2.102966	4.314973	chr12	8697043	8697239	SINE|MIR|MIRc	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.750000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	6590236	6590272	6590248	+	High_confidence	6	10	32	1.869303	4.750000	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.593750
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	4331477	4331514	4331477	-	RAMPAGE_only	26	26	69	4.030685	5.396649	chr18	4331320	4331788	LINE|L2|L2	+	chr18	3708463	4455266	MSTRG.10734.14	-	3708463,3729134,3742334,3814058,3879111,4005115,4151179,4369675	3708501,3729375,3742512,3814273,3880140,4005201,4369583,4455266	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	73513609	73513648	73513609	+	High_confidence	13	17	76	4.439595	5.131970	chr17	73512579	73514063	LINE|L1|L1ME4b	+	chr17	73513611	73518770	AC124804.1|ENST00000583547.2	+	73513611,73516600	73513790,73518770	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	7251306	7251329	7251328	+	RAMPAGE_only	4	4	11	0.642573	2.550341	chr16	7250885	7251405	LINE|L1|L1MA8	-	chr16	7176222	7273159	MSTRG.8350.1	+	7176222,7186702,7217149	7186093,7216961,7273159	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	123179083	123179188	123179187	-	RAMPAGE_only	5	6	29	1.694056	3.857307	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.724138
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	172868035	172868038	172868037	+	RAMPAGE_only	3	7	8	0.467326	2.521641	chr5	172867814	172868037	SINE|MIR|MIRb	-	chr5	172834274	172952685	ERGIC1|ENST00000393784.7	+	172834274,172888698,172897001,172909666,172914713,172924004,172926508,172932435,172935187,172950708	172834433,172888760,172897074,172909761,172914838,172924109,172926569,172932536,172935310,172952685	0.750000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	74277072	74277078	74277077	-	RAMPAGE_only	6	6	14	0.817820	2.777363	chrX	74277007	74277297	SINE|Alu|AluJb	+	chrX	74242607	74292342	MSTRG.23841.16	-	74242607,74278162,74280930,74281701,74292168	74278089,74280494,74281085,74281848,74292342	0.928571
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	6208681	6208682	6208681	-	High_confidence	34	34	34	1.986134	3.112132	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.970588
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	46087042	46087066	46087042	-	High_confidence	3	3	9	0.525741	2.500000	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.555556
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	120471817	120471841	120471840	-	RAMPAGE_only	3	3	8	0.467326	3.000000	chr9	120471770	120471851	LINE|L2|L2	+	chr9	120389195	120580005	CDK5RAP2|ENST00000480112.5	-	120389195,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120460571,120467859,120470110,120471747,120477349,120487293,120491306,120518426,120524985,120527805,120528743,120529977,120536371,120539040,120545713,120550791,120568320,120571976,120579919	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120460747,120467997,120470220,120471878,120477450,120487437,120491477,120518645,120525078,120527925,120528797,120530140,120536526,120539164,120545790,120550902,120568388,120572041,120580005	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	52169672	52169707	52169672	-	High_confidence	2	2	9	0.525741	2.503258	chr19	52169654	52169811	SINE|Alu|AluJb	+	chr19	52157365	52170386	ZNF836|ENST00000596428.5	-	52157365,52160464,52168057,52169647,52170359	52157540,52160591,52168152,52169781,52170386	0.666667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100834661	100834697	100834696	+	RAMPAGE_only	2	2	10	0.584157	2.947703	chr14	100834648	100834738	LINE|L2|L2b	+	chr14	100833277	100847301	MEG3|ENST00000455531.1	+	100833277,100845457	100836300,100847301	0.700000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	23939565	23939594	23939565	+	High_confidence	3	3	10	0.584157	2.921928	chr2	23939241	23939827	LTR|ERV1|MER92B	-	chr2	23940418	24004909	UBXN2A|ENST00000309033.4	+	23940418,23958300,23971275,23976968,23982895,23984672,23999671	23940648,23958355,23971414,23977075,23983033,23984831,24004909	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	112227198	112227216	112227198	+	High_confidence	4	4	9	0.525741	2.750000	chr11	112227196	112227258	SINE|MIR|MIR	+	chr11	112226431	112233810	PTS|ENST00000525803.1	+	112226431,112228593,112233162,112233431	112226526,112228673,112233233,112233810	0.666667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	6045727	6045807	6045727	+	RAMPAGE_only	5	5	35	2.044550	4.113362	chr16	6045546	6046618	LINE|L2|L2a	-	chr16	6019702	6092954	MSTRG.8331.8	+	6019702,6038609,6059205,6090073,6092420	6038510,6057104,6059253,6090137,6092954	0.971429
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	19955890	19955944	19955943	+	High_confidence	4	6	24	1.401977	4.251629	chr8	19955939	19955979	DNA|TcMar-Tigger|Tigger19b	+	chr8	19956004	19967196	LPL|ENST00000650478.1	+	19956004,19960900,19962114,19965309	19956083,19961083,19962219,19967196	0.791667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	51814400	51814445	51814444	+	RAMPAGE_only	6	6	14	0.817820	2.556657	chr15	51814446	51814570	LINE|L2|L2c	+	chr15	51751560	51816368	TMOD2|ENST00000249700.8	+	51751560,51766372,51768261,51773711,51776931,51781043,51782720,51798196,51806376,51808419	51751712,51766567,51768418,51773834,51777018,51781174,51782828,51798340,51806521,51816368	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	10340998	10341012	10340998	-	RAMPAGE_only	3	4	9	0.525741	2.500000	chr9	10340938	10341045	SINE|MIR|MIR3	+	chr9	8528151	10612723	PTPRD|ENST00000463477.5	-	8528151,8528590,8633316,8636698,8733779,9018696,9183303,9397448,9414751,9574731,9734532,9766809,9938506,10033717,10340962,10612397,10612687	8528492,8528779,8633458,8636844,8733946,9018735,9183363,9397482,9414823,9574781,9734571,9766851,9938610,10033790,10341017,10612505,10612723	0.555556
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	140700445	140700452	140700445	+	High_confidence	1274	1438	2469	144.228410	4.776398	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.981774
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	166850103	166850142	166850112	+	RAMPAGE_only	5	6	25	1.460393	3.834963	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.960000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	6560746	6560787	6560776	+	RAMPAGE_only	3	3	14	0.817820	2.777363	chr16	6560745	6560894	LINE|L2|L2b	+	chr16	6549534	6634495	MSTRG.8341.2	+	6549534,6552763	6552711,6634495	0.928571
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	73712954	73712987	73712954	-	RAMPAGE_only	3	3	14	0.817820	3.238901	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	0.928571
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	104725922	104725940	104725922	+	RAMPAGE_only	3	3	8	0.467326	2.521641	chr8	104725898	104726085	LTR|Gypsy?|LTR85a	+	chr8	104703718	105419260	ZFPM2|ENST00000518180.1	+	104703718,104714845,104991623,105246292,105419143	104703784,104714975,104991669,105246529,105419260	0.875000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	67728557	67728590	67728581	+	RAMPAGE_only	5	5	12	0.700989	3.459432	chr4	67728455	67728620	LTR|ERVL|LTR84a	-	chr4	67701360	68080952	UBA6-AS1|ENST00000500538.6	+	67701360,67720421,67728539,67730073,67731505,67755188,68062606,68080120	67701484,67721051,67728686,67730170,67732345,67755255,68063221,68080952	0.750000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	74215780	74215846	74215780	-	RAMPAGE_only	4	4	27	1.577224	4.163856	chrX	74215605	74215736	DNA|hAT-Charlie|Charlie4z	-	chrX	74209975	74293472	MSTRG.23841.12	-	74209975,74218620,74280930,74281701,74293351	74218577,74280494,74281085,74281848,74293472	0.925926
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	5726324	5726325	5726324	-	High_confidence	19	20	20	1.168314	3.426367	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.800000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	144427274	144427275	144427274	-	High_confidence	8	10	10	0.584157	2.641604	chr8	144427020	144427326	SINE|Alu|AluSx	+	chr8	144424964	144427294	VPS28|ENST00000531924.1	-	144424964,144425682,144426025,144426908	144425000,144425772,144426208,144427294	0.700000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	50756934	50756940	50756934	+	High_confidence	4	4	19	1.109899	3.787144	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.736842
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	20775862	20775907	20775862	-	RAMPAGE_only	3	4	13	0.759404	3.180833	chr1	20775005	20775936	DNA|TcMar-Tigger|Tigger3b	+	chr1	20775449	20780541	HP1BP3|ENST00000487117.1	-	20775449,20779811,20780344	20776750,20779911,20780541	0.846154
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	43589354	43589377	43589354	-	High_confidence	5	5	10	0.584157	2.921928	chr19	43589323	43589600	SINE|Alu|AluJr	+	chr19	43585935	43589687	IRGQ|ENST00000596409.1	-	43585935	43589687	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	148363729	148363767	148363729	+	RAMPAGE_only	2	2	9	0.525741	3.000000	chr2	148363532	148368483	LINE|L1|L1PA7	+	chr2	148354082	148376724	MSTRG.13452.1	+	148354082	148376724	0.888889
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	104506171	104506227	104506226	+	RAMPAGE_only	4	4	20	1.168314	3.616349	chr2	104506225	104506290	SINE|MIR|MIRb	-	chr2	104434361	104512757	MSTRG.13159.2	+	104434361,104505865,104512042	104434523,104507406,104512757	0.950000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	72363483	72363522	72363506	-	High_confidence	3	3	12	0.700989	3.095795	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.833333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	40648558	40648623	40648613	-	High_confidence	5	5	25	1.460393	3.347601	chr17	40648546	40648925	LINE|L2|L2b	+	chr17	40625002	40648654	SMARCE1|ENST00000643318.1	-	40625002,40630713,40631591,40632194,40635930,40636394,40637491,40645795,40647772	40628993,40630924,40631693,40632367,40636102,40636526,40637572,40645847,40648654	0.960000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	124454637	124454653	124454637	+	High_confidence	2	2	8	0.467326	2.807355	chr3	124454610	124454956	DNA|TcMar-Tigger|MER2	+	chr3	124455134	124462674	KALRN|ENST00000494648.1	+	124455134,124456609,124461889,124462523	124455359,124456728,124461956,124462674	0.500000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	25028106	25028189	25028174	+	RAMPAGE_only	3	3	15	0.876236	3.506891	chr15	25027967	25028264	SINE|Alu|AluSq2	+	chr15	24979556	25036490	MSTRG.7184.19	+	24979556,24979946,24981774,24998365,24998969,25000244,25001357,25002724,25019026,25019827,25020589,25033468	24979642,24980084,24982437,24998486,24999078,25000374,25001713,25002888,25019148,25019869,25033149,25036490	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	95869935	95869949	95869936	+	RAMPAGE_only	4	6	13	0.759404	3.392747	chr7	95869931	95869979	LINE|L2|L2	-	chr7	95837617	96028321	DYNC1I1|ENST00000519371.1	+	95837617,95869882,95977511,95984814,95987055,95995947,96028174	95837649,95869998,95977601,95984977,95987155,95996073,96028321	0.846154
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	50907166	50907178	50907177	-	RAMPAGE_only	6	6	10	0.584157	2.503258	chr2	50906857	50907497	LTR|ERV1|MER39	+	chr2	50830029	51027703	MSTRG.12767.65	-	50830029,50868175,50922657,50925937,51027501	50868141,50921880,50922687,50925955,51027703	0.900000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	36481311	36481353	36481311	-	High_confidence	4	4	24	1.401977	3.553509	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.833333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	4345246	4345268	4345267	-	RAMPAGE_only	3	3	8	0.467326	3.000000	chr18	4345095	4345454	DNA|TcMar-Tigger|Tigger20a	-	chr18	3708463	4455266	MSTRG.10734.14	-	3708463,3729134,3742334,3814058,3879111,4005115,4151179,4369675	3708501,3729375,3742512,3814273,3880140,4005201,4369583,4455266	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	55538138	55538157	55538138	+	RAMPAGE_only	2	2	10	0.584157	2.947703	chr8	55538144	55538357	SINE|MIR|MIRc	+	chr8	55102388	55542054	XKR4|ENST00000327381.6	+	55102388,55357677,55523280	55103294,55357877,55542054	0.900000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	5680240	5680261	5680260	-	High_confidence	6	6	23	1.343562	3.823068	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.869565
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	162777419	162777475	162777474	-	RAMPAGE_only	4	4	12	0.700989	3.084963	chr2	162777167	162777496	DNA|TcMar-Tigger|MER2	-	chr2	162748947	162838618	MSTRG.13496.6	-	162748947,162810218,162838442	162809903,162836767,162838618	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	13543008	13543138	13543029	-	RAMPAGE_only	5	7	48	2.803955	4.496654	chr12	13542496	13545457	LINE|L2|L2a	+	chr12	13537336	13980363	GRIN2B|ENST00000609686.3	-	13537336,13567024,13569829,13571803,13608602,13611724,13615113,13615492,13616454,13675744,13753316,13865797,13979927	13564639,13567263,13570017,13571964,13608832,13611850,13615267,13615664,13616657,13675859,13753915,13866226,13980363	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	217756558	217756602	217756558	-	High_confidence	2	2	12	0.700989	3.027169	chr2	217756466	217756533	SINE|MIR|MIR3	-	chr2	217284022	217756593	DIRC3|NR_026597.1	-	217284022,217317965,217318919,217325845,217327996,217425301,217426590,217427390,217432922,217433947,217478380,217599611,217756467	217284863,217318201,217319177,217325970,217328152,217425522,217426786,217427473,217433021,217434116,217478558,217600829,217756593	0.500000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	81689516	81689547	81689519	-	High_confidence	225	225	927	54.151371	5.503152	chr9	81689312	81689527	LTR|ERV1|MER52D	-	chr9	81583682	81689535	TLE1|NM_001303103.1	-	81583682,81584447,81585504,81587680,81590804,81593024,81610219,81611768,81613376,81615981,81616645,81620440,81633347,81634096,81652183,81653973,81685675,81685832,81687333,81688216	81584305,81584524,81585655,81587828,81591052,81593274,81610296,81611959,81613521,81616134,81616699,81620557,81633364,81634301,81652288,81654036,81685720,81685896,81687434,81689535	0.971953
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	32641904	32641925	32641904	-	High_confidence	1	1	7	0.408910	2.584963	chr21	32641733	32641912	SINE|MIR|MIR3	-	chr21	32631777	32641945	SYNJ1|ENST00000418301.3	-	32631777,32634860,32638907,32639670,32641895	32631801,32634881,32639125,32639779,32641945	0.571429
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	12800915	12800945	12800944	-	High_confidence	8	8	22	1.285146	3.341446	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.909091
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	77723180	77723215	77723180	-	RAMPAGE_only	3	3	12	0.700989	2.550341	chr14	77722838	77723146	SINE|Alu|AluY	-	chr14	77717598	77761154	SNW1|NM_012245.2	-	77717598,77718366,77720710,77723180,77730987,77732484,77734946,77735936,77736970,77738777,77738965,77751318,77754966,77761113	77718286,77718530,77720828,77723277,77731129,77732601,77735012,77736006,77737075,77738884,77739061,77751480,77755120,77761154	0.916667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	73713043	73713143	73713091	-	RAMPAGE_only	7	7	64	3.738606	4.596427	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	0.984375
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	74254198	74254679	74254198	-	RAMPAGE_only	25	32	495	28.915781	5.895973	chrX	74254189	74254325	LTR|ERV1|HUERS-P3b-int	+	chrX	74242607	74292342	MSTRG.23841.16	-	74242607,74278162,74280930,74281701,74292168	74278089,74280494,74281085,74281848,74292342	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	77737400	77737434	77737433	+	RAMPAGE_only	3	3	13	0.759404	3.251629	chr12	77737473	77737546	DNA|hAT-Charlie|MER5B	+	chr12	77561666	77755523	MSTRG.5291.5	+	77561666,77572836,77647885	77572815,77647821,77755523	0.923077
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	72305911	72305914	72305913	-	High_confidence	14	20	22	1.285146	2.903702	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	0.772727
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	44391330	44391331	44391330	+	RAMPAGE_only	7	7	7	0.408910	2.521641	chr3	44391184	44391489	SINE|Alu|AluSx4	-	chr3	44396786	44407740	TCAIM|ENST00000469246.1	+	44396786,44400521,44401202,44407441	44396834,44400587,44401334,44407740	0.714286
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	82038121	82038161	82038160	-	RAMPAGE_only	4	4	16	0.934652	3.506891	chr7	82038103	82038137	LINE|CR1|X8_LINE	-	chr7	82005446	82033072	CACNA2D1|ENST00000464354.5	-	82005446,82005764,82007678,82012153,82013460,82014400,82032796,82033018	82005497,82005839,82007756,82012243,82013510,82014479,82032901,82033072	0.500000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	166850021	166850061	166850042	+	RAMPAGE_only	5	5	24	1.401977	2.950826	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	160199150	160199156	160199150	+	High_confidence	31	34	55	3.212865	4.472088	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.927273
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	70034618	70034756	70034618	+	RAMPAGE_only	7	7	67	3.913853	3.914961	chr1	70034619	70034774	SINE|MIR|MIR3	+	chr1	69568449	70142253	MSTRG.894.10	+	69568449,69678380,69716141,69760190,69792042,69825747,69834779,69838226,69931506,69980378,69986241,69994560,70011796,70012973,70016464,70018718,70021004,70038112,70053025,70076076,70089726,70107751,70121779,70128537,70130127,70132202,70138109,70142196	69568641,69678478,69716218,69760393,69792160,69825826,69834869,69838283,69931570,69980453,69986386,69994633,70011926,70013089,70016534,70018818,70036624,70044094,70053145,70076298,70089819,70107826,70121870,70128795,70130256,70132288,70138284,70142253	0.985075
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100859923	100859939	100859938	+	RAMPAGE_only	4	4	11	0.642573	2.845351	chr14	100859882	100860045	SINE|MIR|MIRb	+	chr14	100857244	100861018	MEG3|ENST00000398460.3	+	100857244,100860748	100860356,100861018	0.909091
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	165655290	165655337	165655316	-	High_confidence	37	37	117	6.834639	5.724099	chr6	165655189	165655800	LINE|L2|L2a	+	chr6	165327288	165655336	PDE10A|ENST00000648917.1	-	165327288,165336122,165339277,165343390,165379193,165388297,165392645,165395180,165396316,165413500,165416188,165418634,165428657,165430286,165431421,165432973,165435236,165448927,165450241,165482314,165543439,165654812	165333127,165336211,165339358,165343502,165379366,165388453,165392796,165395264,165396459,165413687,165416281,165418777,165428709,165430345,165431472,165433129,165435377,165448977,165450362,165482343,165543568,165655336	0.923077
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	55618850	55618904	55618850	-	High_confidence	11	15	48	2.803955	4.941934	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.937500
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	10447815	10447921	10447878	+	RAMPAGE_only	7	7	63	3.680190	3.870236	chr8	10447597	10447926	LINE|L1|L1MEg	+	chr8	10441627	10469377	MSTRG.21598.15	+	10441627,10468466	10468428,10469377	0.936508
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	95509594	95509613	95509594	-	RAMPAGE_only	4	4	10	0.584157	2.947703	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	0.700000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	74374414	74374466	74374431	-	RAMPAGE_only	5	5	29	1.694056	3.279552	chr11	74374093	74374381	SINE|Alu|AluSc5	-	chr11	74330311	74398465	PGM2L1|NM_173582.4	-	74330311,74338467,74342460,74342884,74343322,74345468,74346731,74347147,74351382,74368491,74370901,74371710,74374414,74398050	74336754,74338601,74342650,74343014,74343416,74345649,74346829,74347337,74351576,74368575,74370986,74371817,74374582,74398465	0.862069
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	31180965	31181105	31181089	-	RAMPAGE_only	5	5	46	2.687123	4.550630	chr1	31180952	31181135	SINE|MIR|MIRc	+	chr1	31179744	31239554	NKAIN1|ENST00000373736.6	-	31179744,31181859,31182529,31183816,31185246,31188049,31239493	31181712,31181941,31182590,31184014,31185327,31188187,31239554	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	23359310	23359387	23359310	-	RAMPAGE_only	12	12	105	6.133650	5.246138	chr19	23359221	23359506	SINE|Alu|AluY	-	chr19	23308902	23395418	MSTRG.11725.6	-	23308902,23338726,23358429,23373741,23374637,23395324	23309097,23342265,23362725,23373837,23374764,23395418	0.923810
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	72363556	72363596	72363556	-	High_confidence	5	5	19	1.109899	3.391893	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.894737
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	134485414	134485490	134485470	-	High_confidence	11	11	95	5.549493	5.595938	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.926316
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	51976469	51976504	51976469	+	RAMPAGE_only	4	4	14	0.817820	2.842371	chr19	51976453	51978688	LTR|ERVK|HERVK3-int	+	chr19	51949161	51981367	ZNF350-AS1|ENST00000595010.1	+	51949161,51976390,51980926	51949235,51976573,51981367	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	27331397	27331417	27331409	+	High_confidence	3	3	12	0.700989	3.277613	chr22	27331341	27331854	LTR|ERVL|LTR33	-	chr22	27331786	27379265	AL020994.2|ENST00000413244.1	+	27331786,27335157,27336096,27379185	27331938,27335330,27336262,27379265	0.750000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	48160009	48160038	48160022	-	High_confidence	4	6	16	0.934652	2.973557	chr15	48159968	48160045	SINE|tRNA|LFSINE_Vert	+	chr15	48143060	48159670	MYEF2|ENST00000558395.1	-	48143060,48149031,48149162,48151472,48151873,48153791,48157992,48158174,48158768,48159612	48143071,48149083,48149371,48151571,48151942,48153893,48158056,48158224,48158922,48159670	0.562500
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	38789809	38789830	38789812	-	RAMPAGE_only	3	3	13	0.759404	3.251629	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	0.923077
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	77363008	77363044	77363008	+	RAMPAGE_only	2	2	11	0.642573	2.913977	chr3	77362672	77363035	LTR|ERVL-MaLR|THE1B	-	chr3	77039885	77373062	MSTRG.16113.7	+	77039885,77098013,77340431	77040846,77098340,77373062	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	173892950	173892972	173892950	+	RAMPAGE_only	3	3	11	0.642573	3.095795	chr1	173892907	173893202	SINE|Alu|AluSz6	-	chr1	173868955	173903549	ZBTB37|ENST00000367701.9	+	173868955,173870199,173873466,173885635	173869120,173871148,173873566,173903549	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	26036718	26036738	26036737	-	RAMPAGE_only	4	4	10	0.584157	3.169925	chr14	26036345	26036772	LINE|L2|L2a	+	chr14	25647303	26143305	LINC02306|ENST00000546412.2	-	25647303,25649798,25660845,25663482,25664734,25835849,25837128,25838459,26126156,26143106	25649257,25649905,25660927,25663550,25664975,25835974,25837211,25838530,26126215,26143305	0.700000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	135548339	135548351	135548350	+	RAMPAGE_only	5	5	11	0.642573	2.721928	chr8	135548149	135548560	LINE|L2|L2a	-	chr8	135542702	135647026	KHDRBS3|ENST00000524282.1	+	135542702,135548753,135557447,135581877,135646992	135542770,135548900,135557587,135582073,135647026	0.818182
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	107253084	107253097	107253084	-	RAMPAGE_only	2	2	7	0.408910	2.584963	chr7	107252247	107253175	LINE|L1|L1MEf	+	chr7	107201554	107564040	COG5|ENST00000347053.7	-	107201554,107210525,107211098,107230614,107236449,107248395,107258272,107281299,107283570,107298141,107324439,107362032,107362307,107372594,107412501,107527236,107548110,107548277,107554284,107557975,107563802	107203630,107210605,107211225,107230691,107236687,107248499,107258383,107281399,107283732,107298346,107324521,107362110,107362420,107372760,107412632,107527357,107548180,107548332,107554342,107558115,107564040	0.714286
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	130692945	130693006	130692988	+	High_confidence	8	8	52	3.037617	5.053661	chr2	130693010	130693142	SINE|Alu|AluY	+	chr2	130693281	130696388	FAR2P3|ENST00000434289.1	+	130693281,130696341	130693796,130696388	0.730769
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	106970552	106970976	106970639	-	RAMPAGE_only	17	20	295	17.232637	6.294704	chr6	106970529	106970829	SINE|Alu|AluSx1	+	chr6	106969830	106974039	CD24|NM_001291739.1	-	106969830,106973669	106971834,106974039	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	1456409	1456431	1456424	+	RAMPAGE_only	5	5	15	0.876236	3.506891	chr11	1456423	1456514	DNA|hAT-Ac|OldhAT1	-	chr11	1453837	1461740	BRSK2|ENST00000526768.5	+	1453837,1456347,1456597,1456954,1459191,1460969	1454608,1456528,1456687,1457049,1459239,1461740	0.733333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	46540536	46540551	46540548	-	RAMPAGE_only	4	5	12	0.700989	2.855389	chr19	46540383	46540588	LTR|ERVL-MaLR|MLT1B	-	chr19	46525475	46600931	PPP5D1|ENST00000593359.2	-	46525475,46526924,46600882	46525784,46527072,46600931	0.500000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	10447541	10447607	10447541	+	RAMPAGE_only	8	8	33	1.927719	4.066784	chr8	10447084	10447572	LINE|L1|L1MEg	+	chr8	10441627	10469377	MSTRG.21598.15	+	10441627,10468466	10468428,10469377	0.939394
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	29970323	29970359	29970323	-	High_confidence	7	9	26	1.518809	3.511028	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	0.769231
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	50259100	50259131	50259130	-	RAMPAGE_only	2	2	7	0.408910	2.807355	chr2	50257897	50259328	DNA|TcMar-Tigger|Tigger1	-	chr2	50239742	50278255	MSTRG.12768.1	-	50239742,50251013	50250990,50278255	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	39369893	39369894	39369893	-	RAMPAGE_only	12	12	15	0.876236	3.521641	chr12	39369860	39369969	LINE|Penelope|Penelope1_Vert	+	chr12	39357250	39367927	KIF21A|ENST00000552908.1	-	39357250,39358177,39363097,39366349,39367029,39367882	39357437,39358373,39363213,39366517,39367188,39367927	0.866667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	65053865	65053883	65053865	-	RAMPAGE_only	2	2	8	0.467326	2.750000	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64947546	65121930	CDH11|ENST00000566827.5	-	64947546,64950766,64971578,64971930,64972903,64982047,64988156,64991767,64992914,64998561,65053803,65121879	64948099,64951018,64971696,64972064,64973040,64982301,64988344,64991935,64993034,64998856,65053928,65121930	0.625000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	30971762	30971763	30971762	+	High_confidence	9	9	12	0.700989	3.188722	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	45716998	45717411	45717154	+	RAMPAGE_only	36	36	492	28.740534	4.741604	chr7	45716652	45717205	LTR|ERVL-MaLR|MLT1E2	+	chr7	45574525	45723116	ADCY1|NM_021116.2	+	45574525,45592758,45610378,45622631,45648669,45657726,45660041,45662058,45677868,45678165,45679708,45684978,45685961,45686546,45703375,45703599,45704517,45708349,45710527,45713692	45575182,45592908,45610497,45622743,45648797,45657885,45660183,45662214,45678063,45678263,45679793,45685068,45686215,45686673,45703492,45703746,45704616,45708464,45710652,45723116	0.995935
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	139344535	139344548	139344547	+	High_confidence	7	7	20	1.168314	3.391893	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.900000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	4404353	4404376	4404353	-	RAMPAGE_only	4	4	13	0.759404	3.022055	chr18	4404239	4404525	DNA|TcMar-Tigger|Tigger19a	-	chr18	3708463	4455266	MSTRG.10734.14	-	3708463,3729134,3742334,3814058,3879111,4005115,4151179,4369675	3708501,3729375,3742512,3814273,3880140,4005201,4369583,4455266	0.923077
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	1997229	1997345	1997229	-	RAMPAGE_only	5	8	74	4.322763	5.604141	chr2	1997219	1997369	SINE|MIR|MIRb	+	chr2	1789147	1979220	MYT1L|ENST00000650399.1	-	1789147,1792320,1801695,1809075,1839148,1840759,1851640,1886538,1887487,1889240,1892036,1942981,1979164	1792007,1792464,1801799,1809167,1839370,1840843,1851703,1886607,1887609,1889477,1892287,1943334,1979220	0.837838
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	111387776	111387815	111387800	-	RAMPAGE_only	4	4	17	0.993067	3.327820	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.647059
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	199397788	199397789	199397788	-	RAMPAGE_only	7	7	11	0.642573	2.646439	chr2	199397606	199397893	SINE|Alu|AluSz	+	chr2	199368609	199423915	MSTRG.13804.11	-	199368609,199380363,199381693,199397529	199368707,199380487,199381820,199423915	0.545455
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	108768090	108768165	108768164	+	RAMPAGE_only	3	3	14	0.817820	3.392747	chr5	108768042	108768250	LINE|CR1|L3b	-	chr5	108748966	108843001	FER|ENST00000502752.1	+	108748966,108768092,108782662,108798123,108832769,108835707,108841830,108842261	108748993,108768238,108782755,108798389,108832943,108835807,108841868,108843001	0.714286
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	65570509	65570522	65570521	+	High_confidence	11	20	44	2.570292	4.784143	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.590909
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	6128478	6128488	6128478	+	RAMPAGE_only	3	5	11	0.642573	2.732159	chr16	6128334	6128602	LINE|L1|L1MEf	+	chr16	6052849	6173550	MSTRG.8331.13	+	6052849,6062710	6062545,6173550	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	107580245	107580267	107580264	+	High_confidence	514	516	2490	145.455140	6.986560	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.885542
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	48430799	48430807	48430804	+	High_confidence	2	2	7	0.408910	2.521641	chr10	48430753	48430850	LINE|L2|L2b	-	chr10	48429892	48435877	MAPK8|ENST00000459755.1	+	48429892,48434883	48431270,48435877	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	118651542	118651602	118651563	-	High_confidence	88	91	648	37.853386	7.194207	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.967593
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	8536675	8536681	8536675	+	RAMPAGE_only	2	2	8	0.467326	2.500000	chr7	8536595	8537002	LINE|L2|L2a	-	chr7	8441957	8634599	MSTRG.20454.1	+	8441957	8634599	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	30429287	30429289	30429288	-	RAMPAGE_only	10	16	16	0.934652	3.327820	chr13	30428989	30429302	SINE|Alu|AluSq2	+	chr13	30202629	30307487	KATNAL1|NM_032116.4	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30307330	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307487	0.500000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	69716885	69716904	69716889	+	RAMPAGE_only	2	2	9	0.525741	2.750000	chr7	69716468	69717113	LTR|ERVL|MER21C	-	chr7	69632589	69806181	MSTRG.20802.8	+	69632589,69640209	69640184,69806181	0.888889
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	68208872	68208895	68208872	+	RAMPAGE_only	2	2	11	0.642573	3.321928	chr3	68208873	68209351	LTR|ERVL-MaLR|MLT1E1A	+	chr3	68127864	68329137	MSTRG.16090.4	+	68127864,68305435	68305409,68329137	0.909091
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	70453688	70453695	70453694	+	RAMPAGE_only	5	5	13	0.759404	3.251629	chrX	70453648	70453712	DNA|hAT-Ac|OldhAT1	+	chrX	70452304	70505487	DLG3|ENST00000374355.7	+	70452304,70453636,70454213,70479149,70492106,70492520,70493375,70497179,70498519,70499175,70499876,70500470,70500897,70502162	70452755,70453793,70454316,70479264,70492283,70492596,70493475,70497221,70498570,70499277,70500049,70500580,70500989,70505487	0.769231
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	85039183	85039203	85039183	+	RAMPAGE_only	6	8	27	1.577224	3.254694	chr3	85039077	85039271	SINE|Alu|AluSx1	-	chr3	85013891	85216241	MSTRG.16139.1	+	85013891,85028974	85028892,85216241	0.925926
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	4800984	4801047	4801046	-	RAMPAGE_only	4	4	16	0.934652	3.640224	chr20	4800953	4801009	DNA|hAT-Ac|OldhAT1	-	chr20	4780022	4795504	RASSF2|ENST00000478553.1	-	4780022,4786230,4787632,4788216,4789595,4790450,4792538,4792993,4795255	4784342,4786328,4787701,4788268,4789697,4790611,4792627,4793054,4795504	0.875000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	40453546	40453547	40453546	-	High_confidence	8	8	10	0.584157	2.725481	chr2	40453521	40453703	DNA|hAT-Charlie|MER5B	+	chr2	40430019	40453438	SLC8A1|ENST00000455476.5	-	40430019,40453160	40430304,40453438	0.900000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	51403418	51403433	51403418	-	RAMPAGE_only	3	3	16	0.934652	2.866248	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.937500
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	26956509	26956545	26956509	-	High_confidence	5	5	16	0.934652	3.000000	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.875000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	70401420	70401503	70401444	+	RAMPAGE_only	4	6	29	1.694056	4.208966	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.586207
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	74254988	74255048	74255011	-	RAMPAGE_only	3	3	17	0.993067	3.852169	chrX	74254333	74256146	LTR|ERV1|HUERS-P3b-int	+	chrX	74242607	74292342	MSTRG.23841.16	-	74242607,74278162,74280930,74281701,74292168	74278089,74280494,74281085,74281848,74292342	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	32601294	32601326	32601310	+	RAMPAGE_only	2	2	9	0.525741	2.750000	chr12	32601190	32601318	SINE|MIR|MIRb	-	chr12	32582378	32644751	FGD4|ENST00000494977.1	+	32582378,32598496,32600409,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624658,32624975,32625653,32633548,32637649,32638654,32640275,32642760,32644593	32582467,32598586,32600509,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32624751,32625068,32625779,32633689,32637855,32638795,32640453,32642842,32644751	0.888889
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	34988756	34988768	34988764	-	High_confidence	3	3	9	0.525741	2.500000	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.888889
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	82081606	82081670	82081606	-	High_confidence	8	8	40	2.336629	4.365312	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.525000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	71448771	71448829	71448804	+	High_confidence	2	3	13	0.759404	3.026987	chr11	71448789	71448904	LINE|L2|L2a	-	chr11	71448673	71452157	AP002387.1|ENST00000529369.1	+	71448673,71451689	71448885,71452157	0.846154
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	191245105	191245170	191245163	+	High_confidence	4	4	14	0.817820	3.521641	chr2	191245108	191245343	LINE|L1|L1M4b	+	chr2	191245184	191346274	MYO1B|ENST00000418908.5	+	191245184,191276886,191296110,191329934,191341460,191346235	191245257,191277030,191296226,191330029,191341565,191346274	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	52543591	52543603	52543591	-	RAMPAGE_only	2	2	6	0.350494	2.584963	chr14	52543581	52543672	LINE|L2|L2a	+	chr14	52430589	52552506	TXNDC16|ENST00000281741.8	-	52430589,52439203,52440563,52455323,52457089,52470036,52470511,52482229,52482821,52488362,52490390,52490838,52511239,52514879,52519171,52536718,52537598,52542370,52543397,52544263,52552315	52432587,52439394,52440724,52455462,52457174,52470173,52470680,52482289,52482965,52488486,52490451,52491005,52511390,52514970,52519293,52536793,52537672,52542453,52543630,52544371,52552506	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	17642858	17642875	17642858	-	RAMPAGE_only	4	4	9	0.525741	2.947703	chr19	17642466	17642815	LINE|L2|L2b	-	chr19	17601327	17688199	UNC13A|ENST00000519716.6	-	17601327,17609939,17611762,17617701,17618420,17618905,17620692,17621831,17623541,17624828,17626632,17627508,17627862,17629239,17630144,17630653,17632781,17633107,17636023,17639082,17639435,17639839,17640510,17641392,17642844,17645673,17645969,17647264,17648430,17648911,17649338,17649508,17652630,17655273,17655882,17658061,17663531,17666649,17668116,17669552,17672377,17674656,17676011,17688177	17606354,17610099,17611855,17617849,17618501,17618962,17620722,17621870,17623547,17624952,17626785,17627597,17627940,17629323,17630288,17630750,17632908,17633193,17636157,17639217,17639525,17639908,17640661,17641556,17642960,17645843,17646111,17647492,17648650,17648983,17649344,17649587,17652677,17655382,17656398,17658269,17663567,17666704,17668190,17669676,17672495,17674756,17676041,17688199	0.777778
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	70025718	70025748	70025718	+	RAMPAGE_only	5	5	18	1.051483	2.744843	chr1	70025534	70025734	SINE|MIR|MIRc	-	chr1	69568449	70142253	MSTRG.894.10	+	69568449,69678380,69716141,69760190,69792042,69825747,69834779,69838226,69931506,69980378,69986241,69994560,70011796,70012973,70016464,70018718,70021004,70038112,70053025,70076076,70089726,70107751,70121779,70128537,70130127,70132202,70138109,70142196	69568641,69678478,69716218,69760393,69792160,69825826,69834869,69838283,69931570,69980453,69986386,69994633,70011926,70013089,70016534,70018818,70036624,70044094,70053145,70076298,70089819,70107826,70121870,70128795,70130256,70132288,70138284,70142253	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	74148384	74148414	74148403	+	High_confidence	5	8	33	1.927719	4.066784	chr2	74148357	74148636	LINE|L2|L2	-	chr2	74148044	74149988	BOLA3-AS1|ENST00000533563.1	+	74148044,74148349,74148697	74148223,74148478,74149988	0.878788
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	27121399	27121426	27121399	-	RAMPAGE_only	5	5	18	1.051483	3.572431	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	143018381	143018434	143018394	-	High_confidence	19	20	83	4.848505	4.790593	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	142981737	143018390	LY6E-DT|ENST00000517833.1	-	142981737,143018159	142982501,143018390	0.807229
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	19737530	19737551	19737550	+	RAMPAGE_only	8	9	19	1.109899	3.683542	chr11	19737526	19737782	SINE|MIR|MIR	+	chr11	19713365	19759997	MSTRG.3457.6	+	19713365,19749459	19749349,19759997	0.947368
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	70257706	70257707	70257706	+	High_confidence	23	23	32	1.869303	4.349200	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.843750
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	74199724	74199776	74199775	-	RAMPAGE_only	3	3	14	0.817820	3.128085	chrX	74198660	74199941	DNA|TcMar-Mariner|HSMAR2	+	chrX	74196350	74293574	FTX|ENST00000603037.2	-	74196350,74247331,74274341,74280393,74280930,74281701,74293351	74203909,74247424,74274410,74280494,74281085,74281848,74293574	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	113758154	113758155	113758154	-	RAMPAGE_only	6	6	9	0.525741	2.725481	chr1	113758040	113758255	SINE|Alu|AluSq2	+	chr1	113697201	113759155	PHTF1|ENST00000393357.6	-	113697201,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113759155	0.777778
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	91179462	91179526	91179462	-	High_confidence	7	7	35	2.044550	4.271371	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.742857
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	24368607	24368634	24368633	-	RAMPAGE_only	3	4	11	0.642573	2.913977	chr12	24368549	24368674	LINE|L2|L2b	+	chr12	23845998	24357430	SOX5|ENST00000536729.2	-	23845998,23895897,24213342,24277215,24357337	23846193,23896024,24213417,24277312,24357430	0.727273
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	6825016	6825041	6825040	+	RAMPAGE_only	4	4	11	0.642573	2.845351	chr16	6824960	6825136	SINE|Alu|AluSx	-	chr16	6790236	6859111	MSTRG.8345.3	+	6790236,6841243	6841215,6859111	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	3062920	3062940	3062922	-	High_confidence	29	34	71	4.147516	5.038730	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.929577
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	103919510	103919538	103919510	-	High_confidence	5	5	22	1.285146	3.439936	chrX	103919452	103919627	SINE|MIR|MIRb	-	chrX	103905634	103919479	MSTRG.23985.1	-	103905634,103911961	103911636,103919479	0.863636
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	104507235	104507387	104507330	+	RAMPAGE_only	5	5	56	3.271280	4.175202	chr2	104507130	104507346	SINE|MIR|MIR	-	chr2	104434377	104512757	LINC01102|ENST00000447380.1	+	104434377,104505865,104507231,104512042	104434523,104506303,104507406,104512757	0.732143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	95121537	95121558	95121557	-	High_confidence	3	4	11	0.642573	3.277613	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	166850187	166850275	166850274	+	RAMPAGE_only	6	7	42	2.453460	4.315312	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.952381
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	16712878	16712979	16712889	-	High_confidence	21	21	160	9.346515	6.045987	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.918750
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	35692805	35692852	35692851	+	RAMPAGE_only	9	9	21	1.226730	3.576618	chr3	35692730	35692915	DNA|hAT-Charlie|MER3	-	chr3	35690924	35721631	MSTRG.15719.31	+	35690924,35701196	35701015,35721631	0.904762
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	51354782	51354853	51354782	-	High_confidence	19	19	136	7.944538	5.040325	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.985294
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	162624129	162624168	162624129	-	RAMPAGE_only	3	3	11	0.642573	3.121928	chr2	162623853	162624399	DNA|TcMar-Tigger|MER44D	+	chr2	162542422	162748836	MSTRG.13499.1	-	162542422	162748836	0.909091
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	61321498	61321524	61321523	+	RAMPAGE_only	4	6	12	0.700989	2.845351	chr4	61321475	61321822	DNA|TcMar-Tigger|Tigger3a	-	chr4	61201257	62072437	MSTRG.17268.2	+	61201257,61218473,61246859,61497120,61517314,61587226,61676825,61732753,61813808,61892670,61895730,61909559,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62070108	61218429,61246757,61383189,61497348,61517518,61587440,61676935,61733554,61813889,61892958,61895834,61909745,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62072437	0.916667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	61517367	61517398	61517367	+	RAMPAGE_only	3	3	13	0.759404	3.085055	chr4	61517137	61518029	DNA|hAT-Charlie|Charlie17b	+	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.769231
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	144496644	144496674	144496673	-	High_confidence	3	3	8	0.467326	2.807355	chr2	144496672	144496823	SINE|MIR|MIRb	+	chr2	144494264	144496878	AC009951.1|ENST00000623674.1	-	144494264	144496878	0.875000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	106285249	106285256	106285249	+	High_confidence	8	8	18	1.051483	3.169249	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106285479	106286326	AC007032.1|ENST00000609281.1	+	106285479	106286326	0.833333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	50785210	50785272	50785222	+	RAMPAGE_only	3	4	20	1.168314	3.784184	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	77597604	77597643	77597604	+	RAMPAGE_only	3	5	17	0.993067	3.572469	chr12	77597588	77597695	LINE|L2|L2c	-	chr12	77561666	77755523	MSTRG.5291.5	+	77561666,77572836,77647885	77572815,77647821,77755523	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	32446970	32447003	32446977	+	High_confidence	12	16	65	3.797022	5.073940	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.876923
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	88611927	88611967	88611966	-	High_confidence	5	5	15	0.876236	3.378783	chr5	88611830	88613057	LINE|L1|L1MDa	+	chr5	88540510	88611776	LINC00461|ENST00000506664.5	-	88540510,88542034,88611663	88541123,88542070,88611776	0.666667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	80442631	80442674	80442673	+	High_confidence	2	2	7	0.408910	2.521641	chr5	80442407	80442849	LINE|L2|L2a	-	chr5	80443048	80479153	ZFYVE16|ENST00000511829.5	+	80443048,80445262,80448282,80449590,80450430,80451484,80455691,80456460,80456944,80459413,80472760,80473753,80474662,80477218	80443284,80445405,80448404,80449713,80450586,80451709,80455774,80456565,80457092,80459494,80472923,80473859,80474830,80479153	0.571429
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	23384865	23384873	23384865	-	High_confidence	7	7	14	0.817820	3.238901	chr21	23384605	23385150	LTR|ERVL|MLT2B3	-	chr21	23361103	23384861	D21S2088E|ENST00000262354.4	-	23361103,23364037,23372326,23372947,23384687	23362239,23364193,23372448,23373084,23384861	0.785714
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	76786801	76786852	76786826	+	RAMPAGE_only	2	2	14	0.817820	3.392747	chr3	76786692	76786840	DNA|hAT-Charlie|MER58B	-	chr3	76749046	76965687	MSTRG.16117.1	+	76749046,76865519,76956431	76828323,76871428,76965687	0.928571
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	45720454	45720874	45720454	+	RAMPAGE_only	8	8	213	12.442548	6.054170	chr7	45720228	45720541	SINE|Alu|AluSx1	+	chr7	45574525	45723116	ADCY1|NM_021116.2	+	45574525,45592758,45610378,45622631,45648669,45657726,45660041,45662058,45677868,45678165,45679708,45684978,45685961,45686546,45703375,45703599,45704517,45708349,45710527,45713692	45575182,45592908,45610497,45622743,45648797,45657885,45660183,45662214,45678063,45678263,45679793,45685068,45686215,45686673,45703492,45703746,45704616,45708464,45710652,45723116	0.995305
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	143248138	143248162	143248156	+	RAMPAGE_only	4	4	19	1.109899	3.836592	chr2	143247953	143248400	LINE|L2|L2a	-	chr2	143129329	143768352	ARHGAP15|NM_018460.3	+	143129329,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.736842
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	10533928	10533961	10533928	+	RAMPAGE_only	5	5	14	0.817820	3.182006	chr10	10533734	10534553	LINE|L2|L2	-	chr10	10484279	10566336	MSTRG.2292.1	+	10484279	10566336	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	61952964	61953008	61952970	-	RAMPAGE_only	8	8	29	1.694056	3.646967	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	53585035	53585092	53585035	-	RAMPAGE_only	2	2	21	1.226730	3.784942	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	21200778	21200826	21200825	+	High_confidence	5	5	17	0.993067	3.250000	chr6	21200835	21201081	LINE|L1|L1MC3	+	chr6	21200811	21231441	CDKAL1|ENST00000476517.1	+	21200811,21201109,21230847	21200892,21201274,21231441	0.882353
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	176377965	176377996	176377995	+	RAMPAGE_only	3	3	8	0.467326	2.750000	chr5	176377758	176378061	SINE|Alu|AluJb	-	chr5	176365467	176381909	ARL10|ENST00000310389.5	+	176365467,176366379,176368806,176371721	176365746,176366581,176368982,176381909	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	59619894	59619923	59619894	+	High_confidence	447	562	1784	104.213643	6.186100	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.923206
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	581722	581723	581722	+	RAMPAGE_only	5	6	8	0.467326	2.521641	chr4	581557	582828	LINE|L1|L1ME1	-	chr4	577000	588713	MSTRG.16940.1	+	577000	588713	0.875000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	43013392	43013393	43013392	-	High_confidence	8	8	11	0.642573	3.277613	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	68071406	68071437	68071406	+	RAMPAGE_only	3	4	10	0.584157	3.121928	chr3	68071100	68071459	LTR|ERVL-MaLR|THE1B	-	chr3	68004218	68545621	MSTRG.16090.2	+	68004218,68417279,68538755,68544485	68250911,68417420,68538880,68545621	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	155869852	155869861	155869860	+	RAMPAGE_only	5	5	14	0.817820	2.985228	chr1	155869840	155870033	SINE|MIR|MIR	+	chr1	155859508	155885199	SYT11|ENST00000368324.4	+	155859508,155867964,155880499,155881197	155859795,155868791,155880623,155885199	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	132675338	132675366	132675338	-	High_confidence	5	5	20	1.168314	3.421928	chr8	132675252	132675288	SINE|MIR|MIRb	-	chr8	132570418	132675441	LRRC6|NM_001321965.1	-	132570418,132583693,132610165,132611293,132615037,132622610,132625271,132632739,132637934,132643373,132656829,132661459,132674557	132572480,132583779,132610261,132611363,132615097,132622688,132625454,132632963,132638107,132643686,132656907,132661627,132675441	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	62339322	62339400	62339367	+	RAMPAGE_only	2	2	14	0.817820	3.378783	chr8	62338999	62339437	LINE|L2|L2b	-	chr8	62248962	62394701	MSTRG.21954.4	+	62248962,62287111	62287047,62394701	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	99410112	99410162	99410112	+	High_confidence	3	3	15	0.876236	3.039149	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.800000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	138880196	138880197	138880196	-	RAMPAGE_only	15	15	15	0.876236	2.789898	chr5	138880161	138880436	SINE|Alu|AluJb	-	chr5	138872631	138875368	LRRTM2|ENST00000518785.1	-	138872631,138874907	138874128,138875368	0.933333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	52615383	52615438	52615399	-	High_confidence	5	5	26	1.518809	3.543465	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.923077
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	5699495	5699509	5699495	+	High_confidence	2	2	8	0.467326	2.807355	chr10	5699528	5699730	LINE|L1|L1M7	+	chr10	5699492	5714207	FAM208B|ENST00000463468.5	+	5699492,5712393,5712822,5714134	5699737,5712539,5712918,5714207	0.500000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	77733608	77733627	77733614	+	RAMPAGE_only	10	10	33	1.927719	3.298162	chr12	77732849	77733789	LINE|L2|L2	-	chr12	77561666	77755523	MSTRG.5291.5	+	77561666,77572836,77647885	77572815,77647821,77755523	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	8856708	8856715	8856708	-	RAMPAGE_only	3	3	10	0.584157	2.721928	chr2	8856546	8856854	SINE|Alu|AluSz	-	chr2	8852689	9003750	MBOAT2|NM_138799.3	-	8852689,8860612,8862589,8864169,8868445,8873107,8877029,8882510,8888017,8908620,8943186,8958496,9003539	8858904,8860764,8862722,8864234,8868549,8873300,8877213,8882565,8888073,8908716,8943264,8958642,9003750	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	39809843	39809914	39809858	-	High_confidence	8	11	53	3.096033	4.700132	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.660377
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	34244753	34244826	34244815	-	High_confidence	17	33	117	6.834639	5.542797	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34164697	34244698	MSTRG.18048.1	-	34164697,34175821,34179012,34182679,34218294,34244615	34175537,34175957,34179097,34182867,34218450,34244698	0.786325
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	89210417	89210462	89210461	+	RAMPAGE_only	4	6	11	0.642573	3.095795	chr3	89210434	89210500	DNA|hAT-Ac|OldhAT1	+	chr3	89107675	89479659	EPHA3|ENST00000494014.1	+	89107675,89127208,89209859,89340915,89341754,89395836,89399317,89407268,89408066,89413140,89419204,89429105,89431149,89449224,89450176,89472463,89479396	89107836,89127273,89210520,89341071,89342090,89395961,89399480,89407371,89408131,89413266,89419390,89429167,89431359,89449374,89450370,89472522,89479659	0.727273
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	54200579	54200588	54200579	+	High_confidence	5	5	12	0.700989	2.732159	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200195	54225464	MRPL37|ENST00000605337.5	+	54200195,54205017,54205294,54209945,54212500,54216140,54225124	54200589,54205201,54205410,54210131,54212658,54216344,54225464	0.916667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	97988412	97988473	97988412	-	RAMPAGE_only	5	5	24	1.401977	3.220337	chr1	97988341	97988392	DNA|hAT-Tip100|MER91B	-	chr1	97986739	98045305	MIR137HG|ENST00000634594.1	-	97986739,98044549	97989569,98045305	0.958333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	29368579	29368612	29368579	-	RAMPAGE_only	2	2	9	0.525741	3.169925	chr14	29367407	29369444	LINE|L1|L1ME3A	+	chr14	29274752	29381290	AL133166.1|ENST00000548306.1	-	29274752,29309179,29317955,29346444,29378292,29381180	29274781,29309317,29318002,29346525,29378456,29381290	0.555556
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	74213820	74213850	74213849	-	High_confidence	3	4	16	0.934652	3.375000	chrX	74213589	74213937	LINE|L1|L1PB	+	chrX	74209975	74213660	Z83843.1|ENST00000604070.1	-	74209975	74213660	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	70763622	70763637	70763636	+	RAMPAGE_only	3	4	11	0.642573	3.277613	chr4	70763601	70763658	LINE|L2|L2a	-	chr4	70734433	70807102	RUFY3|ENST00000502653.5	+	70734433,70741626,70762518,70763551,70764474,70768537,70773510,70775167,70778368,70783090,70784795,70788805,70789494,70793784,70794794,70800140,70802955,70804347,70806515	70734593,70741680,70762692,70763669,70764576,70768661,70773572,70775233,70778438,70783183,70784879,70788973,70789592,70793904,70794894,70800205,70802983,70804416,70807102	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	47743691	47743728	47743691	+	High_confidence	20	20	107	6.250482	5.945903	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.616822
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	212440941	212440963	212440941	-	RAMPAGE_only	1	1	7	0.408910	2.584963	chr2	212440548	212446198	LTR|ERVL|HERVL-int	+	chr2	212225703	212446548	MSTRG.13923.12	-	212225703,212391641,212426361	212391608,212426275,212446548	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	69719477	69719544	69719514	+	RAMPAGE_only	3	3	16	0.934652	3.640224	chr7	69719364	69719528	LINE|CR1|L3b	+	chr7	69632589	69806181	MSTRG.20802.8	+	69632589,69640209	69640184,69806181	0.937500
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	110936584	110936585	110936584	+	High_confidence	8	10	11	0.642573	3.121928	chr12	110936431	110936780	LTR|ERVL-MaLR|THE1D	+	chr12	110936601	110937451	LINC01405|ENST00000331096.2	+	110936601,110937184	110936698,110937451	0.636364
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	133396120	133396139	133396138	+	High_confidence	16	16	30	1.752472	4.168326	chr7	133396038	133396214	DNA|hAT-Charlie|MER5A	+	chr7	133396138	133630138	EXOC4|ENST00000486409.6	+	133396138,133475327,133480049,133630044	133396414,133475473,133480138,133630138	0.866667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	81473699	81473757	81473699	-	RAMPAGE_only	6	6	30	1.752472	4.440224	chr5	81473245	81473683	LINE|L1|L1PA8	-	chr5	81419978	81448063	SSBP2|ENST00000510060.5	-	81419978,81428584,81437429,81440557,81442652,81446867,81447909	81420533,81428683,81437458,81440636,81442723,81446922,81448063	0.566667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	10486544	10486614	10486580	+	High_confidence	5	5	37	2.161382	4.572431	chr8	10486611	10487565	LTR|ERVL|ERVL-E-int	+	chr8	10486806	10489666	AC104964.3|ENST00000606115.1	+	10486806	10489666	0.918919
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	123060156	123060256	123060174	-	High_confidence	55	55	403	23.541535	5.615806	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.637717
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	64	64	64	3.738606	3.930650	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	18010615	18010654	18010653	+	RAMPAGE_only	6	8	39	2.278213	4.663231	chr8	18010700	18010985	SINE|Alu|AluSg	+	chr8	18013827	18027758	PCM1|ENST00000519802.5	+	18013827,18014583,18025360,18025543,18027636	18014036,18014840,18025453,18025658,18027758	0.717949
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	70021010	70021015	70021014	+	RAMPAGE_only	3	5	10	0.584157	2.947703	chr1	70021050	70021195	DNA|hAT-Ac|OldhAT1	+	chr1	69568449	70147196	MSTRG.894.4	+	69568449,69678380,69760190,69792042,69825747,69834779,69838226,69931506,69980378,69986241,69994560,70011796,70012973,70016464,70018718,70021004,70028170,70036120,70036443,70038112,70043953,70053025,70076076,70089726,70107751,70121779,70128537,70138109,70140542,70142196,70147026	69568641,69678478,69760393,69792160,69825826,69834869,69838283,69931570,69980453,69986386,69994633,70011926,70013089,70016534,70018818,70023374,70028371,70036232,70036624,70039793,70044094,70053145,70076298,70089819,70107826,70121870,70128795,70138284,70140614,70142253,70147196	0.900000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	3795743	3795764	3795743	+	High_confidence	4	4	14	0.817820	2.985228	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021872.3	+	3795738,3797621,3798411,3800287,3800461,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	231072213	231072255	231072213	+	RAMPAGE_only	3	3	15	0.876236	3.521641	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.800000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	68106450	68106514	68106507	+	RAMPAGE_only	2	2	11	0.642573	3.277613	chr3	68106492	68107064	LINE|L1|L1ME1	+	chr3	68004218	68545621	MSTRG.16090.2	+	68004218,68417279,68538755,68544485	68250911,68417420,68538880,68545621	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	12465158	12465212	12465211	-	RAMPAGE_only	6	7	17	0.993067	3.528064	chr18	12465178	12465452	SINE|Alu|AluJr	-	chr18	12449665	12493149	SPIRE1|ENST00000464481.5	-	12449665,12452254,12452484,12453067,12454345,12459754,12463350,12464867,12479698,12493071	12449896,12452391,12452512,12453138,12454483,12459928,12463493,12464958,12479871,12493149	0.647059
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	4393479	4393589	4393479	-	RAMPAGE_only	7	7	76	4.439595	4.800045	chr18	4392705	4393707	LINE|L2|L2a	+	chr18	3708463	4455266	MSTRG.10734.14	-	3708463,3729134,3742334,3814058,3879111,4005115,4151179,4369675	3708501,3729375,3742512,3814273,3880140,4005201,4369583,4455266	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	124673287	124673332	124673287	-	RAMPAGE_only	3	3	15	0.876236	3.373557	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124552799	124727998	MSTRG.22343.4	-	124552799,124555741,124556231,124557680,124558712,124562781,124565661,124567070,124568378,124585086,124589619,124591150,124699525,124704129,124727883	124553692,124555904,124556405,124557875,124558832,124562992,124565759,124567178,124568536,124585161,124589711,124591235,124699599,124704191,124727998	0.533333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	100011499	100011543	100011499	-	RAMPAGE_only	6	6	21	1.226730	3.932138	chr2	100011412	100011657	DNA|hAT-Tip100|MamTip2	+	chr2	100006148	100007951	AFF3|ENST00000498090.1	-	100006148,100007147	100007017,100007951	0.904762
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	84898659	84898792	84898725	-	RAMPAGE_only	7	7	64	3.738606	5.326259	chr11	84898649	84899055	LINE|L2|L2c	+	chr11	84827765	84923137	MSTRG.4090.30	-	84827765,84857106,84908918	84857048,84908761,84923137	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	104756435	104756471	104756470	-	RAMPAGE_only	8	8	25	1.460393	4.084963	chr2	104756234	104756423	SINE|MIR|MIRb	-	chr2	104746636	104757719	LINC01114|NR_038231.1	-	104746636,104749321,104754325,104756080	104747151,104749489,104754440,104757719	0.520000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	4331947	4331980	4331947	-	RAMPAGE_only	1	1	8	0.467326	2.807355	chr18	4331865	4332171	LINE|L2|L2b	-	chr18	3708463	4455266	MSTRG.10734.14	-	3708463,3729134,3742334,3814058,3879111,4005115,4151179,4369675	3708501,3729375,3742512,3814273,3880140,4005201,4369583,4455266	0.875000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100829411	100829456	100829421	+	High_confidence	5	5	30	1.752472	4.494680	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.733333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	39437563	39437608	39437607	+	RAMPAGE_only	2	2	6	0.350494	2.584963	chr1	39437300	39437611	SINE|Alu|AluSx	-	chr1	39410265	39442289	MSTRG.592.24	+	39410265,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39439273,39441002,39441223,39441951,39442146	39414477,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39438008,39439500,39441125,39441325,39442053,39442289	0.833333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	168555537	168555592	168555576	-	RAMPAGE_only	7	7	32	1.869303	3.913910	chr5	168555251	168555542	SINE|Alu|AluSx	-	chr5	168548494	168579600	PANK3|ENST00000239231.6	-	168548494,168559031,168561392,168563888,168566012,168568645,168579255	168557621,168559157,168561516,168564065,168566266,168568998,168579600	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	26213708	26213739	26213718	-	RAMPAGE_only	8	12	35	2.044550	4.436007	chr14	26213640	26213876	LINE|L2|L2c	+	chr14	25647303	26143305	LINC02306|ENST00000546412.2	-	25647303,25649798,25660845,25663482,25664734,25835849,25837128,25838459,26126156,26143106	25649257,25649905,25660927,25663550,25664975,25835974,25837211,25838530,26126215,26143305	0.657143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	32927960	32927977	32927976	+	RAMPAGE_only	14	14	32	1.869303	4.155652	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.718750
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	125497354	125497374	125497354	-	RAMPAGE_only	6	6	13	0.759404	3.022055	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	0.846154
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100831484	100831525	100831484	+	RAMPAGE_only	8	10	43	2.511876	4.199035	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100833277	100847301	MEG3|ENST00000455531.1	+	100833277,100845457	100836300,100847301	0.930233
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	58305611	58305665	58305664	+	High_confidence	2	2	7	0.408910	2.521641	chr19	58305670	58306101	LTR|ERVK|LTR3	+	chr19	58305376	58312462	ERVK3-1|ENST00000609864.5	+	58305376,58306087,58312020,58312165	58305445,58306216,58312061,58312462	0.714286
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	50234275	50234369	50234275	-	RAMPAGE_only	5	7	34	1.986134	4.187889	chr2	50234211	50234496	SINE|Alu|AluSq2	+	chr2	50232088	50496076	MSTRG.12767.35	-	50232088,50465441,50466460,50469703,50495904	50236970,50465561,50466487,50472471,50496076	0.970588
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	74232577	74232583	74232577	-	RAMPAGE_only	18	19	30	1.752472	4.080050	chrX	74232348	74232626	SINE|Alu|AluJo	+	chrX	74209975	74293472	MSTRG.23841.12	-	74209975,74218620,74280930,74281701,74293351	74218577,74280494,74281085,74281848,74293472	0.933333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	50907420	50907604	50907420	-	RAMPAGE_only	5	5	50	2.920786	4.610663	chr2	50906857	50907497	LTR|ERV1|MER39	+	chr2	50830029	51027703	MSTRG.12767.65	-	50830029,50868175,50922657,50925937,51027501	50868141,50921880,50922687,50925955,51027703	0.940000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	199397629	199397630	199397629	-	RAMPAGE_only	5	5	8	0.467326	2.807355	chr2	199397606	199397893	SINE|Alu|AluSz	+	chr2	199368609	199423915	SATB2|ENST00000484124.1	-	199368609,199380363,199381693,199423685	199368707,199380487,199381820,199423915	0.625000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	50724876	50724889	50724879	-	RAMPAGE_only	3	3	12	0.700989	2.913977	chr2	50724820	50724900	LTR|ERV1|LTR12D	+	chr2	50465442	50745358	MSTRG.12767.42	-	50465442,50472297,50495904,50497332,50506494,50528624,50531226,50538252,50552586,50620021,50623313,50654256	50465561,50472471,50496095,50497714,50506617,50528651,50531430,50538636,50553025,50620183,50624012,50745358	0.916667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	10435799	10435903	10435799	+	RAMPAGE_only	4	4	47	2.745539	3.508189	chr8	10435802	10436092	SINE|Alu|AluSz6	+	chr8	10433671	10438312	AC104964.2|ENST00000562242.1	+	10433671	10438312	0.978723
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	16780464	16780516	16780515	+	RAMPAGE_only	7	10	25	1.460393	4.088779	chr17	16778735	16781272	LINE|L1|L1PB1	+	chr17	16720516	16804455	MSTRG.9552.13	+	16720516,16727059,16727526,16734689,16761424,16762312,16763964,16771976,16773496,16787934,16791826,16796042,16798241,16799950,16801035,16802258	16720658,16727139,16727740,16735643,16761718,16762533,16764175,16772019,16787122,16788135,16792053,16796234,16798530,16800371,16801128,16804455	0.920000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	10282476	10282533	10282532	+	RAMPAGE_only	7	7	36	2.102966	4.704511	chr1	10282562	10282741	LINE|CR1|L3	+	chr1	10232328	10381596	KIF1B|ENST00000620295.2	+	10232328,10256246,10258492,10261904,10267379,10268151,10271501,10272240,10273013,10275427,10276320,10277985,10282321,10291081,10292046,10295085,10295659,10296581,10296896,10297173,10320042,10321708,10323883,10324757,10326110,10334519,10336656,10337073,10337370,10339768,10342049,10343231,10345844,10347760,10348648,10352630,10360928,10361691,10363282,10365099,10365408,10368466,10371140,10374315,10374853,10375254,10378338	10232434,10256323,10258672,10261970,10267558,10268263,10271579,10272306,10273031,10275503,10276399,10278128,10282533,10291161,10292122,10295165,10295766,10296665,10297077,10297246,10320136,10321857,10324062,10324895,10326359,10334638,10336742,10337203,10337533,10339859,10342168,10343287,10345953,10347827,10348733,10352736,10361043,10361825,10363344,10365245,10365648,10368538,10371262,10374465,10375046,10375373,10381596	0.916667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	62012771	62012780	62012779	+	RAMPAGE_only	6	9	17	0.993067	3.327820	chr2	62012779	62012863	DNA|hAT-Charlie|MER5B	+	chr2	61905646	62136247	COMMD1|ENST00000311832.5	+	61905646,62000700,62135830	61905858,62000982,62136247	0.529412
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	122789044	122789055	122789044	+	High_confidence	5	5	21	1.226730	3.826875	chr6	122788977	122789115	LTR|ERV1|PrimLTR79	+	chr6	122789048	122809720	SMPDL3A|NM_006714.4	+	122789048,122795676,122796823,122801309,122803663,122804908,122806232,122809090	122789458,122795890,122796968,122801406,122803833,122805089,122806357,122809720	0.809524
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	39810033	39810099	39810083	-	High_confidence	21	22	110	6.425729	5.390743	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39777349	39810097	GLIDR|ENST00000638724.1	-	39777349,39778893,39809485,39809730	39778566,39778944,39809615,39810097	0.590909
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	41981964	41982053	41982046	-	RAMPAGE_only	7	7	56	3.271280	4.233906	chr19	41982026	41982072	LINE|CR1|L3	-	chr19	41966581	41993467	ATP1A3|NM_001256213.1	-	41966581,41967248,41967661,41968784,41969434,41970184,41970387,41975628,41976415,41977935,41978150,41978605,41981501,41981721,41981907,41984917,41985305,41985863,41986115,41987935,41988317,41988475,41993392	41966965,41967340,41967763,41968915,41969580,41970308,41970542,41975797,41976566,41978072,41978326,41978798,41981636,41981831,41982106,41985186,41985423,41985998,41986229,41988139,41988377,41988562,41993467	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	64990085	64990108	64990088	-	High_confidence	4	4	10	0.584157	3.121928	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.900000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	72351177	72351197	72351179	-	RAMPAGE_only	9	15	35	2.044550	4.411585	chr4	72350303	72351253	LINE|L1|L1MEc	-	chr4	72282040	72568796	ADAMTS3|ENST00000622135.1	-	72282040,72282461,72288750,72290854,72295653,72298276,72303916,72305986,72309396,72311047,72312290,72313676,72315857,72318571,72319331,72319857,72320713,72323013,72339493,72414814,72548477,72567373,72568693	72282193,72283704,72288868,72291062,72295786,72298442,72304080,72306067,72309520,72311181,72312466,72313822,72315971,72318704,72319475,72319963,72320870,72323097,72339693,72414971,72548884,72567401,72568796	0.542857
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	36109682	36109695	36109694	-	RAMPAGE_only	3	3	7	0.408910	2.521641	chr13	36109596	36109795	SINE|MIR|MIRc	-	chr13	36056490	36131306	MSTRG.5877.12	-	36056490,36074506,36125761,36131113	36074468,36112215,36126156,36131306	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	173931443	173931598	173931597	+	RAMPAGE_only	7	12	52	3.037617	4.474418	chr3	173931135	173931990	LINE|L2|L2a	-	chr3	173816037	174279362	MSTRG.16702.9	+	173816037,173959651,174095669,174124737,174275314,174278860	173959590,174095596,174124464,174136580,174275527,174279362	0.942308
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	102450314	102450413	102450314	-	High_confidence	7	7	50	2.920786	5.013661	chr11	102450237	102450387	LTR|ERVL-MaLR|MLT1K	+	chr11	102402033	102449452	TMEM123|ENST00000531103.5	-	102402033,102448811,102449114	102402206,102448868,102449452	0.720000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	128622512	128622529	128622528	+	RAMPAGE_only	4	4	12	0.700989	3.095795	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.500000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	44610854	44610921	44610854	-	RAMPAGE_only	17	18	102	5.958403	5.771015	chr12	44610329	44610807	LINE|L2|L2	-	chr12	44521961	44523635	NELL2|ENST00000547636.1	-	44521961,44523290	44522176,44523635	0.519608
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	89888929	89888949	89888929	+	RAMPAGE_only	2	2	10	0.584157	2.947703	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.600000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	43557747	43557748	43557747	-	High_confidence	4	4	7	0.408910	2.807355	chr5	43557737	43557841	DNA|hAT-Charlie|MER33	-	chr5	43536853	43557734	PAIP1|ENST00000511321.5	-	43536853,43538923,43543003,43547727,43555829,43557700	43536944,43539035,43543116,43547913,43555999,43557734	0.714286
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	72631393	72631425	72631408	+	RAMPAGE_only	3	3	13	0.759404	3.188722	chr6	72630740	72631794	LINE|L2|L2b	-	chr6	72622171	72658540	MSTRG.19755.10	+	72622171,72637416	72637308,72658540	0.923077
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	47486752	47486791	47486752	-	High_confidence	2	2	10	0.584157	3.121928	chr11	47486415	47486707	SINE|Alu|AluSz6	-	chr11	47477295	47486799	CELF1|ENST00000422993.2	-	47477295,47478876,47482694,47484388,47486749	47477425,47478952,47482856,47484523,47486799	0.900000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	4355592	4355593	4355592	-	High_confidence	54	54	54	3.154449	3.911817	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.925926
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	86482555	86482578	86482577	+	RAMPAGE_only	4	5	8	0.467326	2.750000	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.750000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	151669675	151669679	151669675	-	RAMPAGE_only	6	6	14	0.817820	2.719295	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.928571
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	84261257	84261342	84261257	+	RAMPAGE_only	5	5	34	1.986134	2.876487	chr8	84261259	84261619	LTR|ERVL-MaLR|THE1C	+	chr8	84184940	84529464	MSTRG.22085.11	+	84184940,84287374,84529298	84287318,84346150,84529464	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	99155946	99155953	99155946	-	High_confidence	13	13	32	1.869303	4.413716	chr12	99155702	99156003	LINE|CR1|L3	-	chr12	98743973	99155090	ANKS1B|NM_001204067.1	-	98743973,98751354,98773041,98781116,98782125,98798933,98800996,98832028,99053156,99084924,99154288,99154969	98745846,98751522,98773179,98781203,98782137,98799005,98801125,98832136,99053309,99085023,99154395,99155090	0.812500
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	74221726	74221767	74221726	-	RAMPAGE_only	2	2	10	0.584157	3.121928	chrX	74221560	74221872	SINE|Alu|AluJb	+	chrX	74209975	74293472	MSTRG.23841.12	-	74209975,74218620,74280930,74281701,74293351	74218577,74280494,74281085,74281848,74293472	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	110440319	110440333	110440332	-	RAMPAGE_only	3	3	8	0.467326	2.750000	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	96303166	96303280	96303166	-	RAMPAGE_only	20	20	71	4.147516	5.362785	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.985915
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	39459904	39459952	39459904	+	RAMPAGE_only	3	3	14	0.817820	3.180833	chr19	39459842	39459908	LTR|ERV1|LTR78B	-	chr19	39457700	39466720	SUPT5H|ENST00000593727.1	+	39457700,39458293,39458817,39459004,39459183,39459558,39459891,39466479,39466674	39457740,39458305,39458887,39459073,39459249,39459589,39459960,39466569,39466720	0.714286
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	30573353	30573393	30573392	-	High_confidence	3	3	9	0.525741	2.641604	chr7	30572870	30573848	LTR|ERV1|LOR1-int	-	chr7	30564143	30573148	GARS-DT|ENST00000614950.4	-	30564143,30568832,30572999	30564255,30568989,30573148	0.555556
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	13544591	13544811	13544638	-	RAMPAGE_only	13	13	133	7.769291	5.846898	chr12	13542496	13545457	LINE|L2|L2a	+	chr12	13537336	13980363	GRIN2B|ENST00000609686.3	-	13537336,13567024,13569829,13571803,13608602,13611724,13615113,13615492,13616454,13675744,13753316,13865797,13979927	13564639,13567263,13570017,13571964,13608832,13611850,13615267,13615664,13616657,13675859,13753915,13866226,13980363	0.962406
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	116390289	116390343	116390289	+	RAMPAGE_only	5	5	28	1.635640	3.541744	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.892857
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	110606582	110606613	110606582	-	RAMPAGE_only	2	2	9	0.525741	3.169925	chr11	110606493	110606587	LINE|RTE-BovB|MamRTE1	-	chr11	110577034	110712050	ARHGAP20|NM_001258415.1	-	110577034,110582320,110583547,110586215,110590647,110591976,110606560,110608983,110611308,110614560,110615552,110624161,110630627,110690546,110711657	110581225,110582435,110583737,110586325,110590809,110592155,110606749,110609050,110611386,110614645,110615594,110624311,110630792,110690629,110712050	0.666667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	163677376	163677423	163677422	+	RAMPAGE_only	17	17	32	1.869303	4.453881	chr6	163677217	163677775	LTR|ERVL|MLT2A2	+	chr6	163703903	163759841	AL137005.1|ENST00000452944.1	+	163703903,163759224	163704005,163759841	0.781250
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	147173173	147173174	147173173	+	High_confidence	7	7	10	0.584157	2.641604	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.800000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	79118199	79118338	79118292	+	RAMPAGE_only	8	8	61	3.563359	3.255740	chr14	79118296	79118670	LTR|ERVL-MaLR|MLT1I	+	chr14	79020254	79227762	MSTRG.6870.1	+	79020254,79187701	79187602,79227762	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	18153636	18153647	18153646	+	High_confidence	8	8	25	1.460393	4.083856	chr17	18153414	18153703	SINE|Alu|AluSq2	+	chr17	18153653	18178984	MYO15A|ENST00000646782.1	+	18153653,18154130,18154679,18155109,18156194,18156953,18157155,18158522,18158924,18159274,18159605,18159934,18161316,18162584,18163243,18163741,18166360,18167589,18171637,18172206,18173594,18178768	18153896,18154190,18154755,18155432,18156336,18157065,18157900,18158638,18158997,18159347,18159679,18160017,18161447,18162679,18163321,18163838,18166521,18167723,18171771,18172416,18173921,18178984	0.760000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	74217925	74218108	74218107	-	RAMPAGE_only	31	31	196	11.449481	5.624695	chrX	74218073	74218254	DNA|hAT-Charlie|MER117	-	chrX	74209975	74293472	MSTRG.23841.12	-	74209975,74218620,74280930,74281701,74293351	74218577,74280494,74281085,74281848,74293472	0.979592
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	20658558	20658608	20658568	+	High_confidence	9	9	26	1.518809	3.946223	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.769231
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	111296492	111296565	111296517	-	RAMPAGE_only	7	8	43	2.511876	3.946388	chrX	111296471	111296785	SINE|Alu|AluSz	+	chrX	111293778	111411146	DCX|NM_000555.3	-	111293778,111312641,111330918,111333050,111400989,111410034,111410753	111301743,111312736,111331041,111333153,111401330,111410420,111411146	0.976744
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	133079703	133079704	133079703	+	RAMPAGE_only	5	6	8	0.467326	2.521641	chr3	133079350	133079707	LTR|ERVL-MaLR|MLT1A0	-	chr3	133038401	133379926	MSTRG.16431.3	+	133038401,133045901,133057475,133134640,133379751	133038435,133057425,133120955,133229351,133379926	0.875000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	155679929	155679930	155679929	-	High_confidence	10	10	10	0.584157	2.921928	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	20658397	20658437	20658397	+	High_confidence	3	3	15	0.876236	3.182006	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.866667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	17197809	17197846	17197830	+	High_confidence	2	2	11	0.642573	2.921928	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	0.909091
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	133063122	133063246	133063245	+	RAMPAGE_only	7	7	66	3.855437	5.143476	chr3	133062752	133063838	LINE|L2|L2	-	chr3	133038401	133379926	MSTRG.16431.3	+	133038401,133045901,133057475,133134640,133379751	133038435,133057425,133120955,133229351,133379926	0.939394
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	66715248	66715287	66715248	-	RAMPAGE_only	3	3	8	0.467326	2.500000	chr11	66714958	66715210	DNA|hAT-Charlie|Charlie10	-	chr11	66685251	66721240	SPTBN2|ENST00000529997.5	-	66685251,66686993,66687426,66687867,66688003,66688168,66688652,66689095,66689804,66690038,66691283,66692535,66692969,66693185,66693771,66694138,66696276,66698638,66698991,66699405,66700525,66701583,66704597,66705683,66707515,66708140,66708901,66710581,66710916,66713630,66714090,66714315,66715221,66715829,66721083	66686440,66687167,66687647,66687918,66688079,66688311,66688849,66689180,66689943,66690283,66691658,66692740,66693100,66693446,66693861,66694363,66696540,66698785,66699082,66699608,66701282,66701721,66705468,66705837,66707818,66708299,66709019,66710769,66711029,66713746,66714171,66714407,66715395,66715981,66721240	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	2523148	2523149	2523148	-	RAMPAGE_only	5	5	7	0.408910	2.521641	chr9	2522902	2523149	SINE|MIR|MIRb	-	chr9	2503279	2522019	VLDLR-AS1|ENST00000447278.1	-	2503279,2506358,2521902	2503403,2506540,2522019	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	155343321	155343387	155343321	-	RAMPAGE_only	10	10	39	2.278213	3.695507	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.743590
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	57567991	57568042	57568021	-	High_confidence	6	6	28	1.635640	4.137538	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551661	57567807	UBE2L6|ENST00000287156.8	-	57551661,57554436,57560336,57567584	57552509,57554623,57560432,57567807	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	127330859	127330878	127330877	-	High_confidence	3	3	8	0.467326	2.521641	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.875000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	35155799	35155836	35155799	+	RAMPAGE_only	8	8	41	2.395044	4.682587	chr13	35155732	35155807	DNA|hAT-Ac|OldhAT1	-	chr13	35069951	35672735	MSTRG.5878.6	+	35069951,35070718,35095995,35098296,35109289,35110809,35117413,35118227,35118376,35123481,35142268,35155773,35156082,35157077,35159015,35161749,35164355,35168986,35171271,35173463,35176995,35182359,35183975,35195863,35208699,35211052,35232491,35290388,35309527,35349107,35352156,35432268,35452091,35472399,35550476,35550929,35554986,35566904,35583897,35593327,35606425,35628080,35646258,35649654,35651804,35654854,35655578,35665084,35667373,35668367,35670900	35070105,35070852,35096101,35098405,35109442,35110978,35117493,35118290,35118474,35123574,35142377,35155855,35156206,35157270,35160032,35161967,35164509,35168995,35171452,35173594,35177103,35182528,35184071,35196302,35208854,35211179,35232619,35290450,35309592,35349216,35352323,35432393,35452235,35472536,35550594,35551032,35555102,35567017,35584038,35593447,35606578,35628248,35646348,35649847,35651876,35655010,35655749,35665186,35667570,35668519,35672735	0.951220
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	33194695	33194715	33194708	-	High_confidence	12	12	30	1.752472	4.185230	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.766667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	46490019	46490037	46490036	-	High_confidence	6	6	12	0.700989	2.550341	chr19	46489891	46489994	LINE|L2|L2a	-	chr19	46481084	46490120	PPP5D1|ENST00000595691.1	-	46481084,46489865	46481440,46490120	0.750000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	80059915	80059919	80059918	+	High_confidence	29	30	53	3.096033	4.675573	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.981132
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	153871921	153871947	153871921	+	High_confidence	7	7	21	1.226730	3.916127	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	202563293	202563314	202563309	+	RAMPAGE_only	2	2	12	0.700989	3.095795	chr2	202563151	202563452	SINE|Alu|AluSg4	+	chr2	202377433	202567751	BMPR2|ENST00000374574.2	+	202377433,202464808,202467518,202513718,202514887,202518821,202520086,202530793,202532584,202542310,202552715,202559695	202377550,202464979,202467689,202513829,202514979,202519052,202520201,202530954,202532732,202542447,202552888,202567751	0.916667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	88611735	88611750	88611735	-	RAMPAGE_only	44	49	93	5.432662	5.797010	chr5	88611584	88611790	LINE|L1|L1MDa	+	chr5	88514560	88684770	MSTRG.18463.2	-	88514560,88542034,88671035,88672964,88684657	88541123,88542070,88671085,88673090,88684770	0.559140
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	96979464	96979489	96979488	-	RAMPAGE_only	3	3	10	0.584157	2.947703	chr7	96979316	96979617	SINE|Alu|AluSz	+	chr7	96978467	97004298	MSTRG.20989.9	-	96978467,97003276	96979591,97004298	0.800000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	67571180	67571215	67571205	+	High_confidence	3	5	11	0.642573	2.594907	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.909091
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	81418879	81418905	81418879	-	RAMPAGE_only	2	3	11	0.642573	2.921928	chr5	81418515	81418848	DNA|TcMar-Tigger|Tigger3a	-	chr5	81413020	81751253	SSBP2|ENST00000320672.8	-	81413020,81428584,81437429,81440557,81442652,81446867,81448789,81461054,81466973,81473699,81474495,81489249,81513627,81615472,81636556,81650266,81750980	81420533,81428683,81437458,81440636,81442723,81446922,81448825,81461103,81467041,81473770,81474562,81489309,81513717,81615557,81636618,81650339,81751253	0.909091
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	209705170	209705226	209705170	+	High_confidence	2	2	16	0.934652	3.373557	chr2	209705015	209705203	SINE|MIR|MIR	+	chr2	209705381	209710161	MAP2|ENST00000464007.1	+	209705381,209709913	209705727,209710161	0.812500
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	193614860	193614861	193614860	+	High_confidence	9	9	14	0.817820	2.777363	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.928571
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	122444187	122444417	122444187	-	RAMPAGE_only	18	19	232	13.552447	5.017191	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	4248954	4248990	4248973	-	High_confidence	5	7	21	1.226730	3.584184	chr18	4248689	4249312	LINE|L2|L2a	+	chr18	4005115	4248719	DLGAP1|ENST00000577430.1	-	4005115,4151179,4248568	4005201,4151287,4248719	0.666667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	44914313	44914322	44914313	+	High_confidence	6	6	10	0.584157	2.846439	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	7137063	7137110	7137097	+	RAMPAGE_only	6	7	23	1.343562	3.558519	chr12	7137127	7137213	SINE|MIR|MIR1_Amn	+	chr12	7138681	7143198	CLSTN3|ENST00000544584.1	+	7138681,7141241,7142085,7142868,7143162	7138816,7141404,7142139,7143026,7143198	0.869565
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	95826493	95826524	95826523	-	High_confidence	2	2	7	0.408910	2.584963	chr2	95824349	95826979	LINE|L1|L1PA10	-	chr2	95807051	95826981	LINC00342|NR_103734.1	-	95807051,95814049,95824200	95807302,95814145,95826981	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	105073273	105073291	105073290	+	RAMPAGE_only	3	3	7	0.408910	2.807355	chr7	105073126	105073419	SINE|Alu|AluJb	+	chr7	105063349	105101478	KMT2E|ENST00000622386.1	+	105063349,105063376,105063389,105066726,105073618,105074642,105076042,105076962,105077302,105078845,105081687,105090008,105090127,105091215,105101424	105063375,105063388,105063580,105066807,105073677,105074815,105076081,105077193,105077433,105078963,105081797,105090126,105090273,105091314,105101478	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	99893471	99893492	99893471	-	High_confidence	7	8	15	0.876236	3.139572	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.933333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	6831168	6831175	6831168	+	RAMPAGE_only	4	5	11	0.642573	2.663533	chr16	6831064	6831399	LTR|ERVL|LTR101_Mam	-	chr16	6790236	6859111	MSTRG.8345.3	+	6790236,6841243	6841215,6859111	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	125337258	125337330	125337315	+	RAMPAGE_only	2	2	9	0.525741	2.725481	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125298921	125362746	GAPVD1|ENST00000312123.13	+	125298921,125301982,125305062,125307412,125307690,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176,125342218,125346818,125349389,125350294,125350712,125354653,125355643,125359419,125360527,125362605	125299106,125302826,125305149,125307547,125307880,125312612,125321499,125323923,125326589,125330218,125332060,125332629,125337095,125337591,125341264,125342299,125346941,125349519,125350404,125350872,125354841,125355857,125359492,125360725,125362746	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	46760159	46760182	46760177	+	High_confidence	8	8	31	1.810887	3.622448	chr18	46759742	46760334	LTR|ERVL-MaLR|MLT1E3	+	chr18	46759723	46764408	AC090241.2|ENST00000624895.1	+	46759723	46764408	0.580645
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	77655003	77655020	77655003	+	RAMPAGE_only	8	8	13	0.759404	3.546594	chr12	77653964	77660122	LINE|L1|L1PA3	+	chr12	77561666	77755523	MSTRG.5291.5	+	77561666,77572836,77647885	77572815,77647821,77755523	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	76418002	76418003	76418002	+	RAMPAGE_only	21	21	27	1.577224	4.085055	chr3	76417975	76418231	LTR|ERV1|MER57F	+	chr3	76328945	76522897	MSTRG.16113.5	+	76328945,76382357	76382159,76522897	0.962963
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	17282887	17282901	17282887	+	RAMPAGE_only	1	1	6	0.350494	2.584963	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.833333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	4331573	4331647	4331586	-	RAMPAGE_only	4	6	30	1.752472	4.351823	chr18	4331320	4331788	LINE|L2|L2	+	chr18	3708463	4455266	MSTRG.10734.14	-	3708463,3729134,3742334,3814058,3879111,4005115,4151179,4369675	3708501,3729375,3742512,3814273,3880140,4005201,4369583,4455266	0.933333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	80147929	80147932	80147929	+	High_confidence	5	5	12	0.700989	3.022055	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80147923	80178432	PARD6G-AS1|NR_028340.1	+	80147923,80175879,80178085	80148254,80175935,80178432	0.500000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	40874239	40874275	40874239	-	RAMPAGE_only	2	2	7	0.408910	2.807355	chr9	40873600	40875654	LINE|L1|L1PA2	+	chr9	40810314	40992161	MSTRG.22772.1	-	40810314,40837647,40840206	40837547,40840106,40992161	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	193090005	193090042	193090041	+	RAMPAGE_only	2	2	7	0.408910	2.584963	chr1	193089802	193090103	SINE|Alu|AluSc5	-	chr1	193069015	193091699	MSTRG.1835.11	+	193069015,193075819,193076500,193076912,193081363,193082185,193082561,193084578,193088405	193069634,193076040,193076647,193077050,193081480,193082299,193082708,193084698,193091699	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	175787500	175787806	175787605	-	High_confidence	14	14	128	7.477212	5.960177	chr4	175787512	175787708	LINE|L2|L2	+	chr4	175632936	175787676	GPM6A|NM_001261448.1	-	175632936,175640128,175640752,175651833,175673679,175701574,175787335	175635057,175640194,175640829,175651987,175673836,175701767,175787676	0.585938
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	20411789	20411790	20411789	+	RAMPAGE_only	4	4	6	0.350494	2.584963	chr7	20411774	20411856	DNA|hAT-Tip100|MER91C	-	chr7	20331122	20415754	ITGB8|ENST00000222573.4	+	20331122,20363636,20367011,20379050,20380665,20381726,20391402,20394895,20398859,20401720,20404627,20406061,20409614,20409874	20331933,20363722,20367186,20379297,20380831,20381885,20391498,20394985,20398994,20402126,20404853,20406171,20409778,20415754	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	59175877	59175919	59175877	+	High_confidence	9	9	30	1.752472	4.306257	chr10	59175778	59175877	LINE|L2|L2a	+	chr10	59176587	59247774	PHYHIPL|NM_032439.3	+	59176587,59234303,59236482,59238587,59245056	59176959,59234500,59236657,59238705,59247774	0.600000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	197913277	197913314	197913277	-	High_confidence	2	2	12	0.700989	3.022055	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.916667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	68249471	68249485	68249471	+	RAMPAGE_only	3	3	7	0.408910	2.521641	chr3	68249129	68249474	LTR|ERVL-MaLR|MLT1K	-	chr3	68127864	68329137	MSTRG.16090.4	+	68127864,68305435	68305409,68329137	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	24096459	24096484	24096483	+	RAMPAGE_only	4	4	12	0.700989	2.913977	chr2	24095157	24101258	LINE|L1|L1PA6	+	chr2	24076857	24097452	FAM228B|ENST00000461972.5	+	24076857,24080875,24087265,24095147	24076969,24080955,24087384,24097452	0.833333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	143039246	143039267	143039266	+	High_confidence	7	7	19	1.109899	3.826875	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.684211
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	210094462	210094501	210094473	+	RAMPAGE_only	2	2	10	0.584157	2.947703	chr1	210094489	210094534	DNA|hAT-Ac|OldhAT1	+	chr1	210021045	210162967	SYT14|ENST00000534859.2	+	210021045,210094321,210100011,210155720,210159399,210160728	210021254,210094593,210100461,210155910,210159477,210162967	0.600000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	74216458	74216529	74216458	-	RAMPAGE_only	4	4	24	1.401977	3.323935	chrX	74216377	74216606	LINE|L2|L2	+	chrX	74209975	74293472	MSTRG.23841.12	-	74209975,74218620,74280930,74281701,74293351	74218577,74280494,74281085,74281848,74293472	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	59667434	59667452	59667449	-	RAMPAGE_only	3	3	12	0.700989	2.550341	chr5	59667323	59667468	SINE|Alu|AluJb	-	chr5	59639551	59768509	MSTRG.18186.22	-	59639551,59768241	59685938,59768509	0.916667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100829523	100829616	100829523	+	High_confidence	4	4	50	2.920786	4.743465	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.520000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	15780729	15780733	15780729	-	High_confidence	16	16	32	1.869303	3.428073	chr12	15780696	15780826	LINE|L2|L2c	+	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.781250
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	80148048	80148049	80148048	+	High_confidence	11	11	12	0.700989	2.913977	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.583333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	111490366	111490395	111490384	+	RAMPAGE_only	4	4	25	1.460393	3.207707	chr5	111490326	111490605	SINE|Alu|AluSq	+	chr5	111224541	111494886	CAMK4|NM_001323377.1	+	111224541,111344023,111374849,111394709,111446685,111449128,111473310,111478380,111482784,111484025	111224644,111344102,111374912,111394782,111446776,111449203,111473386,111478507,111482937,111494886	0.920000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	70130287	70130346	70130317	+	RAMPAGE_only	7	7	24	1.401977	3.914866	chr1	70130363	70130397	LINE|L2|L2a	+	chr1	69568449	70144364	MSTRG.894.9	+	69568449,69678380,69716141,69760190,69792042,69825747,69834779,69838226,69931506,69980378,69986241,69994560,70011796,70012973,70016464,70018718,70021004,70023125,70053025,70076076,70089726,70107751,70121779	69569504,69678478,69716218,69760393,69792160,69825826,69834869,69838283,69931570,69980453,69986386,69994633,70011926,70013089,70016534,70018818,70021129,70039793,70053145,70076298,70089819,70107826,70144364	0.958333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	227534916	227534936	227534916	+	RAMPAGE_only	5	5	13	0.759404	3.251629	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.692308
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	23384790	23384825	23384790	-	High_confidence	2	2	11	0.642573	3.095795	chr21	23384605	23385150	LTR|ERVL|MLT2B3	-	chr21	23361103	23384835	D21S2088E|NR_040254.1	-	23361103,23364037,23372326,23372947,23384687	23362239,23364193,23372448,23373084,23384835	0.818182
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	7183825	7184011	7183903	+	RAMPAGE_only	8	9	98	5.724740	5.181567	chr16	7183791	7184414	LINE|L2|L2a	-	chr16	7176222	7273159	MSTRG.8350.1	+	7176222,7186702,7217149	7186093,7216961,7273159	0.989796
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	77601579	77601692	77601630	+	RAMPAGE_only	11	11	48	2.803955	4.730017	chr12	77601542	77601915	LINE|L2|L2	-	chr12	77561666	77755523	MSTRG.5291.5	+	77561666,77572836,77647885	77572815,77647821,77755523	0.979167
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	4411802	4411915	4411860	-	RAMPAGE_only	3	3	36	2.102966	4.395999	chr18	4411521	4411985	LTR|ERVL-MaLR|MLT1G1	-	chr18	3708463	4455266	MSTRG.10734.14	-	3708463,3729134,3742334,3814058,3879111,4005115,4151179,4369675	3708501,3729375,3742512,3814273,3880140,4005201,4369583,4455266	0.944444
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	231199135	231199166	231199138	+	RAMPAGE_only	3	3	11	0.642573	3.095795	chr1	231199164	231199277	LINE|L2|L2b	+	chr1	231162969	231217024	TRIM67|ENST00000366653.5	+	231162969,231197370,231199046,231200147,231201357,231203866,231206651,231208946,231213814,231215374	231164013,231197466,231199169,231200258,231201517,231204012,231206790,231209250,231213977,231217024	0.818182
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	4393297	4393386	4393324	-	RAMPAGE_only	5	5	35	2.044550	4.389557	chr18	4392705	4393707	LINE|L2|L2a	+	chr18	3708463	4455266	MSTRG.10734.14	-	3708463,3729134,3742334,3814058,3879111,4005115,4151179,4369675	3708501,3729375,3742512,3814273,3880140,4005201,4369583,4455266	0.942857
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	18794054	18794086	18794085	+	High_confidence	14	14	35	2.044550	3.498078	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.971429
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	32403108	32403224	32403148	-	RAMPAGE_only	9	13	89	5.198999	4.591243	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.955056
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	4241233	4241286	4241251	-	RAMPAGE_only	4	4	29	1.694056	4.028605	chr18	4241239	4241371	DNA|hAT-Charlie|MER5A	-	chr18	3708463	4455266	MSTRG.10734.14	-	3708463,3729134,3742334,3814058,3879111,4005115,4151179,4369675	3708501,3729375,3742512,3814273,3880140,4005201,4369583,4455266	0.931034
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	212792464	212792473	212792472	-	High_confidence	6	7	11	0.642573	2.913977	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.545455
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	107670928	107670933	107670928	-	RAMPAGE_only	2	2	7	0.408910	2.584963	chr13	107670719	107670944	LINE|CR1|L3b	-	chr13	107638229	107706863	MSTRG.6203.1	-	107638229,107639636	107639608,107706863	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	88664179	88664205	88664204	+	RAMPAGE_only	3	3	9	0.525741	2.725481	chr4	88664243	88664397	SINE|Alu|FAM	+	chr4	88605793	88708541	HERC3|ENST00000264345.7	+	88605793,88649839,88652011,88652868,88654041,88655173,88655874,88658414,88662430,88664152,88667376,88667891,88669859,88670138,88676217,88676333,88677963,88680092,88681158,88686735,88687216,88704097,88704507,88706751	88606049,88649999,88652088,88653090,88654133,88655304,88656035,88658491,88662555,88664212,88667488,88668081,88670023,88670252,88676241,88676423,88678134,88680236,88681325,88686802,88687299,88704281,88704610,88708541	0.555556
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	2728416	2728462	2728451	-	High_confidence	5	5	17	0.993067	3.616875	chr8	2728201	2728557	LTR|ERV1|LTR12C	+	chr8	2669801	2728419	AC246817.2|ENST00000517357.5	-	2669801,2674729,2678856,2705214,2728329	2670009,2674845,2678939,2705286,2728419	0.529412
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	34588448	34588451	34588450	-	High_confidence	8	13	17	0.993067	3.690117	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.882353
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	39026135	39026164	39026135	+	High_confidence	3	3	13	0.759404	2.719295	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	24580612	24580623	24580622	+	High_confidence	5	5	12	0.700989	2.732159	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.750000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	10520599	10520618	10520599	+	RAMPAGE_only	2	2	6	0.350494	2.584963	chr10	10520567	10520803	LINE|CR1|Plat_L3	+	chr10	10484279	10566336	MSTRG.2292.1	+	10484279	10566336	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	56272397	56272430	56272397	+	High_confidence	2	2	10	0.584157	2.947703	chr4	56272344	56272407	LINE|CR1|L3	+	chr4	56272403	56328092	KIAA1211|ENST00000541073.5	+	56272403,56298213,56301225,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56272492,56298349,56301247,56307699,56310734,56313379,56316689,56323567,56324266,56328092	0.800000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	85290832	85290850	85290832	+	RAMPAGE_only	6	6	14	0.817820	2.719295	chr3	85289930	85295940	LINE|L1|L1PA2	+	chr3	84959004	85395929	MSTRG.16138.4	+	84959004,85238956,85321433,85373786	84959668,85321073,85373738,85395929	0.928571
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	46530319	46530385	46530344	-	RAMPAGE_only	6	9	56	3.271280	5.350562	chr19	46530185	46530438	LINE|L2|L2b	+	chr19	46480795	46600932	PPP5D1|ENST00000602017.5	-	46480795,46525662,46526924,46600882	46481440,46525784,46527072,46600932	0.642857
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	6918647	6918667	6918647	-	High_confidence	3	3	7	0.408910	2.584963	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6916850	6918663	RNF144A-AS1|ENST00000439208.1	-	6916850,6918280	6917224,6918663	0.571429
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	10454806	10455026	10454893	+	RAMPAGE_only	10	10	65	3.797022	4.539235	chr8	10454457	10454942	LINE|L1|L1MDa	-	chr8	10441627	10469377	MSTRG.21598.15	+	10441627,10468466	10468428,10469377	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	10443077	10443124	10443123	+	RAMPAGE_only	14	14	39	2.278213	4.262984	chr8	10442507	10443416	LINE|L1|L1MEc	-	chr8	10441627	10469377	MSTRG.21598.15	+	10441627,10468466	10468428,10469377	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	9407491	9407507	9407506	-	RAMPAGE_only	4	6	16	0.934652	3.327820	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9398354	9414851	AC141557.1|ENST00000540982.1	-	9398354,9400235,9402426,9414802	9398484,9400326,9402556,9414851	0.562500
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	176617397	176617422	176617412	-	RAMPAGE_only	5	5	18	1.051483	2.771902	chr5	176617331	176617629	SINE|Alu|AluYm1	-	chr5	176595801	176610133	GPRIN1|ENST00000303991.4	-	176595801,176609998	176599877,176610133	0.777778
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	105073395	105073404	105073395	+	RAMPAGE_only	6	6	17	0.993067	3.030639	chr7	105073126	105073419	SINE|Alu|AluJb	+	chr7	105063349	105101478	KMT2E|ENST00000622386.1	+	105063349,105063376,105063389,105066726,105073618,105074642,105076042,105076962,105077302,105078845,105081687,105090008,105090127,105091215,105101424	105063375,105063388,105063580,105066807,105073677,105074815,105076081,105077193,105077433,105078963,105081797,105090126,105090273,105091314,105101478	0.941176
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	147937574	147937599	147937598	+	RAMPAGE_only	6	6	13	0.759404	3.334679	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147943244	147948534	FMR1|ENST00000463120.2	+	147943244,147944868,147945533,147948412	147943326,147945051,147945616,147948534	0.923077
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	20658312	20658348	20658312	+	High_confidence	21	22	137	8.002953	4.878994	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.875912
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	122047706	122047737	122047736	+	RAMPAGE_only	2	2	6	0.350494	2.584963	chr7	122047647	122047953	SINE|Alu|AluJb	-	chr7	121873360	122061361	PTPRZ1|ENST00000449182.1	+	121873360,121928155,121967950,121972540,121976172,121976784,121983664,121983966,121996381,121997879,122004613,122010333,122019123,122028551,122031473,122034281,122036599,122038754,122039453,122040815,122042607,122044421,122051427,122051865,122053909,122054940,122058799,122059752,122061079	121873557,121928221,121968130,121972692,121976268,121976851,121983822,121984117,121996566,121998006,122004660,122011309,122019268,122028643,122031559,122034378,122036682,122038889,122039588,122040979,122042743,122044568,122051521,122051939,122054038,122055087,122058942,122059888,122061361	0.500000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	84306555	84306614	84306603	+	RAMPAGE_only	2	2	11	0.642573	3.459432	chr8	84306547	84306664	LTR|ERVL|LTR16	+	chr8	84184940	84529464	MSTRG.22085.11	+	84184940,84287374,84529298	84287318,84346150,84529464	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	185620081	185620108	185620090	-	RAMPAGE_only	3	4	21	1.226730	3.681881	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.666667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	9792226	9792227	9792226	-	High_confidence	4	4	7	0.408910	2.521641	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.571429
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	76299038	76299210	76299038	+	RAMPAGE_only	10	10	85	4.965336	5.257058	chr3	76299005	76299979	LINE|L2|L2a	-	chr3	76273156	77098213	MSTRG.16113.3	+	76273156,76322186,77098013	76322164,76419684,77098213	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	77601205	77601236	77601205	+	RAMPAGE_only	2	2	15	0.876236	3.664498	chr12	77601060	77601324	SINE|MIR|MIR	-	chr12	77561666	77755523	MSTRG.5291.5	+	77561666,77572836,77647885	77572815,77647821,77755523	0.933333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	50736647	50736675	50736674	-	RAMPAGE_only	5	6	14	0.817820	3.093069	chr2	50736451	50736817	LTR|ERVL-MaLR|THE1B	+	chr2	50465442	50745358	MSTRG.12767.42	-	50465442,50472297,50495904,50497332,50506494,50528624,50531226,50538252,50552586,50620021,50623313,50654256	50465561,50472471,50496095,50497714,50506617,50528651,50531430,50538636,50553025,50620183,50624012,50745358	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	46598115	46598150	46598148	-	High_confidence	13	19	71	4.147516	5.486093	chr10	46598144	46598293	LTR|ERVL|LTR41B	-	chr10	46582781	46598145	AL356056.2|ENST00000506914.1	-	46582781,46597833	46583138,46598145	0.774648
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	44907289	44907309	44907289	+	RAMPAGE_only	3	3	11	0.642573	2.846439	chr20	44907296	44907477	SINE|Alu|FAM	+	chr20	44885710	44908532	YWHAB|ENST00000372839.7	+	44885710,44887647,44901530,44903992,44904967,44906000,44906381	44885886,44887742,44901833,44904116,44905131,44906096,44908532	0.909091
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	98698113	98698152	98698151	+	RAMPAGE_only	11	11	39	2.278213	4.160420	chr1	98698112	98698412	LINE|L2|L2c	-	chr1	98661722	98760500	SNX7|ENST00000306121.7	+	98661722,98684884,98691074,98691534,98695517,98698705,98701816,98738236,98760053	98661911,98685067,98691185,98691699,98695716,98698905,98701903,98738389,98760500	0.974359
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	49872169	49872175	49872169	-	RAMPAGE_only	2	2	7	0.408910	2.521641	chr18	49871998	49872125	SINE|MIR|MIR3	-	chr18	49863261	49876283	MYO5B|ENST00000587895.1	-	49863261,49864140,49872166,49875686,49876235	49863327,49864380,49872232,49875827,49876283	0.714286
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	184343967	184343968	184343967	-	RAMPAGE_only	10	12	14	0.817820	2.638460	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184341689	184347912	LINC02363|ENST00000511465.1	-	184341689,184347712	184342053,184347912	0.500000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	74197670	74197679	74197670	-	RAMPAGE_only	3	3	12	0.700989	2.732159	chrX	74196376	74198555	LINE|L1|L1MA9	-	chrX	74196350	74293574	FTX|ENST00000603037.2	-	74196350,74247331,74274341,74280393,74280930,74281701,74293351	74203909,74247424,74274410,74280494,74281085,74281848,74293574	0.916667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	174048087	174048133	174048087	+	RAMPAGE_only	6	6	18	1.051483	3.239098	chr3	174048039	174048236	LINE|RTE-X|L4_A_Mam	-	chr3	173816037	174279362	MSTRG.16702.9	+	173816037,173959651,174095669,174124737,174275314,174278860	173959590,174095596,174124464,174136580,174275527,174279362	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	157334624	157334634	157334624	+	RAMPAGE_only	4	4	9	0.525741	2.750000	chr4	157334489	157334624	LINE|L2|L2c	+	chr4	157220806	157363942	MSTRG.17739.12	+	157220806,157221666,157303551,157312678,157317657,157321437,157332818,157333248,157334009,157341263,157359895,157361537,157362798,157363434	157221130,157221807,157303791,157312875,157317711,157321599,157332986,157333353,157336747,157341462,157360143,157361652,157363047,157363942	0.888889
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	3195732	3195773	3195772	-	High_confidence	11	11	27	1.577224	4.161978	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.851852
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	50740232	50740261	50740260	-	RAMPAGE_only	3	3	11	0.642573	3.321928	chr2	50740133	50740493	LTR|ERVL-MaLR|MLT1L	+	chr2	50465442	50745358	MSTRG.12767.42	-	50465442,50472297,50495904,50497332,50506494,50528624,50531226,50538252,50552586,50620021,50623313,50654256	50465561,50472471,50496095,50497714,50506617,50528651,50531430,50538636,50553025,50620183,50624012,50745358	0.909091
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	218642027	218642041	218642027	-	RAMPAGE_only	2	2	10	0.584157	2.641604	chr2	218641825	218642010	SINE|MIR|MIRb	-	chr2	218638144	218659502	ZNF142|ENST00000433921.5	-	218638144,218640663,218642027,218646170,218648634,218650358,218651700,218656149,218658700,218658979,218659368	218638808,218640769,218645064,218646348,218649459,218650526,218651822,218656463,218658801,218659130,218659502	0.800000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	48926441	48926451	48926450	+	High_confidence	8	8	14	0.817820	2.603158	chr3	48926287	48926569	SINE|Alu|AluSq	-	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.785714
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	89426625	89426633	89426625	+	RAMPAGE_only	3	3	10	0.584157	2.521928	chr15	89426652	89427016	LTR|ERVL-MaLR|MLT1I	+	chr15	89425048	89436968	MSTRG.7986.1	+	89425048	89436968	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	72355145	72355146	72355145	-	High_confidence	19	19	27	1.577224	3.507380	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.962963
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	51815079	51815154	51815153	+	RAMPAGE_only	14	17	45	2.628707	4.487555	chr15	51814979	51815278	SINE|Alu|AluSq2	+	chr15	51751560	51816368	TMOD2|ENST00000249700.8	+	51751560,51766372,51768261,51773711,51776931,51781043,51782720,51798196,51806376,51808419	51751712,51766567,51768418,51773834,51777018,51781174,51782828,51798340,51806521,51816368	0.955556
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	70021043	70021090	70021043	+	RAMPAGE_only	4	4	16	0.934652	3.750000	chr1	70021050	70021195	DNA|hAT-Ac|OldhAT1	+	chr1	69760174	70123488	LRRC7|NM_020794.2	+	69760174,69792042,69825747,69834779,69838226,69931506,69980378,69986241,69994560,70011796,70012973,70016464,70018718,70021004,70023125,70028170,70036120,70036443,70038112,70043953,70053025,70076076,70089726,70107751,70121779	69760393,69792160,69825826,69834869,69838283,69931570,69980453,69986386,69994633,70011926,70013089,70016534,70018818,70021129,70023374,70028371,70036232,70036624,70039793,70044094,70053145,70076298,70089819,70107826,70123488	0.625000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	68107188	68107224	68107223	+	RAMPAGE_only	2	2	6	0.350494	2.584963	chr3	68107270	68107487	LINE|L1|L1ME1	+	chr3	68004218	68545621	MSTRG.16090.2	+	68004218,68417279,68538755,68544485	68250911,68417420,68538880,68545621	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	153967486	153967508	153967486	+	High_confidence	4	6	12	0.700989	2.913977	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.583333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	58455277	58455290	58455289	-	RAMPAGE_only	5	5	9	0.525741	2.750000	chr5	58455099	58455251	DNA|hAT-Charlie|MER5A	-	chr5	58453981	58460139	PLK2|NM_006622.3	-	58453981,58454910,58455284,58455538,58456025,58456491,58456944,58457180,58457487,58458083,58458398,58458724,58458984,58459689	58454774,58455021,58455414,58455779,58456155,58456589,58457092,58457379,58457583,58458171,58458528,58458841,58459092,58460139	0.888889
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	175787845	175787869	175787845	-	High_confidence	3	3	16	0.934652	3.640224	chr4	175787777	175787911	LINE|L2|L2a	+	chr4	175632936	175787676	GPM6A|NM_001261448.1	-	175632936,175640128,175640752,175651833,175673679,175701574,175787335	175635057,175640194,175640829,175651987,175673836,175701767,175787676	0.625000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	98733184	98733222	98733221	+	High_confidence	5	6	18	1.051483	3.614369	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.944444
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	50226714	50226728	50226727	+	High_confidence	11	13	28	1.635640	4.134336	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	0.857143
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	4382184	4382275	4382184	-	RAMPAGE_only	4	4	25	1.460393	3.719080	chr18	4381791	4382152	LTR|ERVL-MaLR|THE1B	-	chr18	3708463	4455266	MSTRG.10734.14	-	3708463,3729134,3742334,3814058,3879111,4005115,4151179,4369675	3708501,3729375,3742512,3814273,3880140,4005201,4369583,4455266	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	143228011	143228038	143228011	+	RAMPAGE_only	8	8	21	1.226730	4.201841	chr2	143227673	143228117	LINE|L1|L1ME4a	-	chr2	143247289	143437042	ARHGAP15|ENST00000469117.5	+	143247289,143250510,143435600,143436912	143247404,143250600,143435699,143437042	0.666667
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	143281669	143281687	143281669	-	High_confidence	11	11	35	2.044550	3.870004	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281250	MINCR|ENST00000519852.5	-	143280827,143281092	143280997,143281250	0.571429
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	61517440	61517497	61517496	+	RAMPAGE_only	6	6	36	2.102966	4.219528	chr4	61517137	61518029	DNA|hAT-Charlie|Charlie17b	+	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.944444
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	102431247	102431260	102431247	-	High_confidence	6	6	14	0.817820	3.085055	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.571429
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	143026446	143026458	143026456	+	RAMPAGE_only	9	12	22	1.285146	3.546439	chr2	143026366	143026854	LTR|ERV1|LTR1D	-	chr2	142877663	143042172	KYNU|ENST00000409512.5	+	142877663,142881344,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142877736,142881430,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143042172	0.681818
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	81664287	81664322	81664294	+	RAMPAGE_only	5	6	25	1.460393	3.772055	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.920000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	11201309	11201348	11201309	-	RAMPAGE_only	9	9	19	1.109899	3.683542	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.842105
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	13419713	13419734	13419733	-	RAMPAGE_only	3	3	12	0.700989	2.732159	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.750000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	29077476	29077517	29077476	+	High_confidence	4	4	16	0.934652	3.702820	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077474	29091576	MAP3K7CL|ENST00000419845.5	+	29077474,29080551,29085812,29091500	29077713,29080708,29085917,29091576	0.562500
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	4359990	4360029	4360028	-	RAMPAGE_only	2	2	7	0.408910	2.807355	chr18	4359655	4360198	LINE|L2|L2a	-	chr18	3708463	4455266	MSTRG.10734.14	-	3708463,3729134,3742334,3814058,3879111,4005115,4151179,4369675	3708501,3729375,3742512,3814273,3880140,4005201,4369583,4455266	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	66729229	66729297	66729279	-	High_confidence	21	24	143	8.353448	5.575545	chr11	66729233	66729349	SINE|MIR|MIRb	-	chr11	66715353	66729226	SPTBN2|ENST00000527010.1	-	66715353,66715829,66721083,66728740	66715395,66715981,66721262,66729226	0.972028
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	56272344	56272365	56272344	+	High_confidence	6	6	17	0.993067	3.280639	chr4	56272344	56272407	LINE|CR1|L3	+	chr4	56272403	56328092	KIAA1211|ENST00000541073.5	+	56272403,56298213,56301225,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56272492,56298349,56301247,56307699,56310734,56313379,56316689,56323567,56324266,56328092	0.823529
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	18063185	18063205	18063185	-	High_confidence	2	2	6	0.350494	2.584963	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	10785742	10785743	10785742	+	RAMPAGE_only	5	5	8	0.467326	2.750000	chr10	10785336	10786030	LINE|L1|L1MA8	+	chr10	10461926	11329053	MSTRG.2291.3	+	10461926,10682455,10843278,10919963,11165485,11217424,11249152,11257737,11266597,11270665,11275056,11288417,11314138,11325835,11328925	10462586,10843025,10846156,10919999,11165682,11217507,11249201,11257872,11266677,11270824,11275120,11288552,11321386,11325979,11329053	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	47067498	47067518	47067498	-	High_confidence	105	111	310	18.108873	5.463760	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.925806
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	65570465	65570466	65570465	+	High_confidence	5	5	7	0.408910	2.807355	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570451	65615757	LINC01515|ENST00000601979.5	+	65570451,65572934,65585484,65585664,65615635	65570545,65573056,65585567,65585802,65615757	0.714286
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	33814388	33814485	33814388	-	High_confidence	3	3	22	1.285146	4.095795	chr1	33814050	33814634	LINE|L2|L2	+	chr1	33772107	33814219	CSMD2|ENST00000338325.1	-	33772107,33788599,33792422,33804745,33810742,33812994,33814001	33772751,33788712,33792526,33804898,33810864,33813184,33814219	0.818182
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	54995690	54995718	54995717	-	RAMPAGE_only	3	3	9	0.525741	2.750000	chr2	54995255	54995952	DNA|TcMar-Tigger|MER6	-	chr2	54972796	55050544	MSTRG.12793.12	-	54972796,54973562,54973820,54974694,54982514,54987490	54973198,54973621,54973867,54974764,54982653,55050544	0.888889
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	47143700	47143744	47143717	-	High_confidence	7	7	27	1.577224	3.856196	chr16	47143450	47143941	LTR|ERV1|LTR12C	+	chr16	47081633	47143709	NETO2|ENST00000303155.9	-	47081633,47086225,47109482,47122656,47122888,47128324,47129223,47131968,47143578	47083801,47086339,47109711,47122784,47122912,47128573,47129364,47132025,47143709	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	53244306	53244449	53244360	-	RAMPAGE_only	16	17	180	10.514829	4.421060	chr1	53244331	53244375	SINE|MIR|MIR3	+	chr1	53242363	53328014	LRP8|ENST00000306052.10	-	53242363,53249379,53250689,53255116,53257239,53258318,53260463,53262067,53262445,53264168,53266472,53271027,53271226,53275630,53276691,53280586,53289566,53326872,53327788	53247056,53249556,53250862,53255185,53257464,53258471,53260605,53262207,53262564,53264396,53266647,53271153,53271346,53275753,53277078,53280715,53289689,53326992,53328014	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	12069749	12069760	12069758	+	High_confidence	4	8	16	0.934652	3.750000	chr17	12069730	12069890	LINE|CR1|L3	+	chr17	12069656	12125318	MAP2K4|ENST00000581941.5	+	12069656,12081355,12095574,12107789,12110374,12113232,12125293	12069849,12081530,12095694,12107909,12110426,12113360,12125318	0.875000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	63746942	63746992	63746942	-	RAMPAGE_only	3	3	13	0.759404	2.855389	chr15	63746812	63746905	LINE|L2|L2c	-	chr15	63608617	63833888	HERC1|ENST00000443617.6	-	63608617,63612250,63615767,63616429,63622814,63623724,63624157,63625984,63628676,63630465,63632708,63633847,63634732,63635960,63637504,63638410,63638710,63640151,63641469,63642956,63643403,63644991,63645482,63648068,63649724,63651252,63652413,63654118,63655741,63656087,63658543,63659735,63660972,63661752,63662983,63664469,63665918,63666355,63669537,63672495,63674341,63677844,63680076,63680536,63686358,63689588,63690540,63692410,63693963,63694311,63694773,63696123,63698727,63706779,63712774,63713352,63716301,63718573,63718782,63723181,63725291,63727646,63729235,63729496,63732923,63734723,63746917,63747723,63749366,63749646,63752957,63754504,63755228,63756436,63758174,63764095,63774693,63833826	63609266,63612556,63615920,63616682,63622891,63623890,63624327,63626154,63628815,63630635,63632811,63633970,63634888,63636142,63637643,63638536,63638776,63640445,63641643,63643058,63643550,63645097,63645682,63648199,63649925,63651380,63652541,63654324,63655955,63656358,63658718,63659936,63661025,63662021,63663204,63664594,63666150,63666472,63669698,63672694,63675117,63678365,63680160,63680776,63686535,63689699,63690647,63692566,63694157,63694549,63694894,63696339,63698996,63706831,63712895,63713665,63716473,63718694,63718897,63723355,63725513,63727838,63729368,63729649,63733145,63734849,63747083,63747858,63749538,63749791,63753085,63754648,63755325,63756748,63758369,63764191,63775649,63833888	0.538462
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	212429246	212429314	212429275	-	RAMPAGE_only	2	2	13	0.759404	3.084963	chr2	212428936	212429403	LTR|ERVL|LTR33	-	chr2	212225703	212446548	MSTRG.13923.12	-	212225703,212391641,212426361	212391608,212426275,212446548	0.692308
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	212411762	212411773	212411772	-	RAMPAGE_only	7	8	15	0.876236	3.521641	chr2	212411486	212411822	LTR|ERV1|LTR78	-	chr2	212225703	212446548	MSTRG.13923.12	-	212225703,212391641,212426361	212391608,212426275,212446548	0.933333
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	25031323	25031544	25031334	+	RAMPAGE_only	27	28	183	10.690077	3.947835	chr15	25030845	25031591	LINE|L1|L1MEf	-	chr15	24979556	25036490	MSTRG.7184.19	+	24979556,24979946,24981774,24998365,24998969,25000244,25001357,25002724,25019026,25019827,25020589,25033468	24979642,24980084,24982437,24998486,24999078,25000374,25001713,25002888,25019148,25019869,25033149,25036490	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	34244698	34244699	34244698	-	High_confidence	19	21	22	1.285146	2.843302	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34164697	34244698	MSTRG.18048.1	-	34164697,34175821,34179012,34182679,34218294,34244615	34175537,34175957,34179097,34182867,34218450,34244698	0.909091
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	212440348	212440601	212440437	-	RAMPAGE_only	9	9	199	11.624728	4.963533	chr2	212440122	212440548	LTR|ERVL|MLT2A1	+	chr2	212225703	212446548	MSTRG.13923.12	-	212225703,212391641,212426361	212391608,212426275,212446548	0.994975
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	116648864	116648880	116648864	-	RAMPAGE_only	5	5	12	0.700989	3.022055	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	7946878	7946898	7946878	+	High_confidence	61	61	119	6.951471	5.033870	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.831933
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	72350993	72351000	72350993	-	RAMPAGE_only	4	4	10	0.584157	2.725481	chr4	72350303	72351253	LINE|L1|L1MEc	-	chr4	72282040	72568796	ADAMTS3|ENST00000622135.1	-	72282040,72282461,72288750,72290854,72295653,72298276,72303916,72305986,72309396,72311047,72312290,72313676,72315857,72318571,72319331,72319857,72320713,72323013,72339493,72414814,72548477,72567373,72568693	72282193,72283704,72288868,72291062,72295786,72298442,72304080,72306067,72309520,72311181,72312466,72313822,72315971,72318704,72319475,72319963,72320870,72323097,72339693,72414971,72548884,72567401,72568796	0.600000
parietal_lobe_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	99471746	99471766	99471765	-	RAMPAGE_only	7	7	16	0.934652	3.640224	chr7	99471609	99471877	SINE|Alu|AluSx1	+	chr7	99458194	99466331	ATP5MF|ENST00000292475.7	-	99458194,99459146,99460085,99466110	99458355,99459263,99460193,99466331	0.687500
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	125061381	125061484	125061483	+	High_confidence	15	16	67	2.550619	5.625645	chr3	125060193	125061692	LINE|L2|L2b	-	chr3	125061458	125062663	MSTRG.27963.1	+	125061458,125061870	125061523,125062663	0.656716
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	158863388	158863409	158863401	+	RAMPAGE_only	4	4	14	0.532965	2.719295	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.857143
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr10	47743693	47743747	47743727	+	High_confidence	21	38	93	3.540411	5.756939	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743705	47765006	MSTRG.4641.1	+	47743705,47758684	47744010,47765006	0.838710
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr19	35164166	35164226	35164201	+	High_confidence	5	6	49	1.865378	3.680256	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	0.979592
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr22	50757120	50757130	50757129	+	High_confidence	10	11	26	0.989792	3.840266	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.884615
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	12528283	12528324	12528300	+	RAMPAGE_only	5	5	22	0.837517	3.594466	chr11	12528254	12528421	SINE|MIR|MIRb	-	chr11	12377478	12535356	PARVA|ENST00000649199.1	+	12377478,12473744,12473912,12477846,12496457,12504313,12508583,12511513,12513298,12513996,12517609,12518444,12527848	12377783,12473834,12473983,12477949,12496598,12504429,12508642,12511533,12513360,12514065,12517711,12518517,12535356	0.954545
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	48979494	48979524	48979494	+	RAMPAGE_only	2	2	10	0.380689	2.721928	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48982709	48983422	ARIH2|ENST00000487891.1	+	48982709,48983198	48982979,48983422	0.600000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	3536822	3536863	3536857	-	High_confidence	6	6	31	1.180137	4.240224	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.741935
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	53464815	53464834	53464815	+	RAMPAGE_only	4	4	11	0.418758	3.121928	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.909091
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	91179064	91179091	91179088	-	High_confidence	3	4	10	0.380689	3.121928	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.900000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	60542151	60542168	60542167	-	RAMPAGE_only	6	6	12	0.456827	2.855389	chr5	60542102	60542353	LINE|L2|L2	+	chr5	59988360	60522120	PDE4D|ENST00000506510.6	-	59988360,60185556,60522050	59988717,60185687,60522120	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chrX	24077125	24077271	24077195	+	RAMPAGE_only	10	10	111	4.225652	4.569334	chrX	24077071	24077365	SINE|Alu|AluSx	-	chrX	24054947	24078810	EIF2S3|NM_001415.3	+	24054947,24055614,24057420,24057632,24060087,24062415,24064200,24065997,24067963,24071557,24073090,24076721	24055037,24055678,24057548,24057754,24060182,24062574,24064335,24066092,24068108,24071727,24073263,24078810	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chrX	151958581	151958582	151958581	-	RAMPAGE_only	9	9	9	0.342620	2.725481	chrX	151958580	151958655	DNA|DNA|MER135	-	chrX	151953124	151959723	GABRE|ENST00000486255.1	-	151953124,151955367,151955707	151955084,151955567,151959723	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr21	28090339	28090410	28090339	+	High_confidence	174	213	777	29.579565	4.453878	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.979408
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	33441347	33441375	33441347	+	High_confidence	2	2	8	0.304552	2.750000	chr5	33441307	33441471	SINE|MIR|MIR3	-	chr5	33441380	33448730	TARS|ENST00000506040.1	+	33441380,33445323,33448540	33441864,33445404,33448730	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	231072189	231072207	231072206	+	RAMPAGE_only	3	3	7	0.266483	2.521641	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chrX	11351675	11351676	11351675	-	RAMPAGE_only	12	12	18	0.685241	3.725481	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	159005961	159005962	159005961	+	High_confidence	48	48	67	2.550619	4.941024	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.865672
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr14	102234519	102234562	102234519	-	High_confidence	3	3	11	0.418758	2.521928	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102231745	102234153	MOK|ENST00000520046.1	-	102231745,102232534,102233687	102231821,102232671,102234153	0.636364
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	139344537	139344584	139344547	+	High_confidence	124	124	311	11.839440	5.522959	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.977492
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	196404216	196404273	196404228	-	High_confidence	48	48	252	9.593372	6.238390	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196228105	196404253	MSTRG.3273.7	-	196228105,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404253	0.829365
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	77127872	77127873	77127872	+	High_confidence	7	7	10	0.380689	3.169925	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	77129077	77129078	77129077	+	High_confidence	3979	4570	4668	177.705802	6.132327	chr1	77128993	77129084	DNA|hAT-Charlie|MER58B	+	chr1	77129113	77129668	AC113935.1|ENST00000471722.1	+	77129113	77129668	0.912382
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr19	45450739	45450740	45450739	-	High_confidence	4	4	6	0.228414	2.584963	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	10710653	10710654	10710653	-	High_confidence	25	25	25	0.951723	3.623465	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10699426	10710120	YBX3|ENST00000546164.5	-	10699426,10701253,10701959,10704059,10709907	10699654,10701353,10702134,10704148,10710120	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	151337614	151337641	151337614	-	High_confidence	26	28	133	5.063169	5.376560	chr2	151337407	151337662	SINE|Alu|AluSq2	+	chr2	151270464	151337608	MSTRG.22826.1	-	151270464,151271625,151275483,151275757,151278827,151281947,151282867,151289592,151292851,151337496	151270875,151271732,151275670,151275864,151278990,151282043,151282954,151289791,151293036,151337608	0.954887
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	7157370	7157382	7157381	+	RAMPAGE_only	7	7	16	0.609103	3.375000	chr7	7157366	7157507	LINE|L1|L1M8	-	chr7	7182614	7248647	C1GALT1|ENST00000436587.6	+	7182614,7234302,7238254,7243523	7182820,7234539,7238922,7248647	0.937500
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr20	35307090	35307091	35307090	-	High_confidence	12	12	17	0.647172	3.852169	chr20	35306926	35307046	SINE|MIR|MIR3	-	chr20	35302565	35307082	UQCC1|ENST00000472559.5	-	35302565,35306665	35304069,35307082	0.941176
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr16	66408519	66408539	66408519	+	High_confidence	9	10	24	0.913655	3.879664	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.875000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr16	81181319	81181331	81181330	-	High_confidence	3	4	11	0.418758	2.921928	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.727273
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	92536651	92536675	92536674	-	High_confidence	2	2	6	0.228414	2.584963	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr14	100829523	100829531	100829523	+	High_confidence	2	2	6	0.228414	2.584963	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	117442523	117442524	117442523	-	RAMPAGE_only	11	11	13	0.494896	2.873141	chr6	117442358	117442707	LTR|ERVL-MaLR|THE1B	-	chr6	117288299	117425855	ROS1|ENST00000368507.7	-	117288299,117300973,117308793,117310080,117311019,117317142,117318187,117319867,117321258,117324331,117326223,117329328,117337171,117341134,117341399,117342399,117344059,117352989,117356628,117357803,117359808,117360341,117362602,117365059,117365580,117366075,117379058,117383316,117385682,117386888,117387779,117389349,117393223,117394161,117394615,117396187,117396914,117403138,117404279,117409581,117414518,117416257,117418461,117425533	117288802,117301137,117308928,117310281,117311117,117317272,117318252,117320030,117321394,117324415,117326414,117329446,117337340,117341311,117341632,117342544,117344262,117353166,117356915,117358009,117360011,117360405,117362865,117365204,117365741,117366290,117379159,117383508,117385861,117386999,117387992,117389846,117393321,117394346,117394738,117396264,117397116,117403277,117404428,117409642,117414545,117416317,117418506,117425855	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	64226142	64226180	64226142	-	High_confidence	88	88	566	21.547019	6.895009	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223798	64226150	TRPT1|ENST00000394547.7	-	64223798,64224099,64224284,64224542,64224800,64225498,64226049	64223967,64224210,64224341,64224717,64224970,64225580,64226150	0.927562
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr22	18149863	18149874	18149868	+	High_confidence	36	38	78	2.969377	4.466752	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.961538
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr14	61618707	61618761	61618715	-	RAMPAGE_only	194	194	918	34.947285	3.697851	chr14	61618374	61618823	LINE|L2|L2	+	chr14	61556271	61570653	LOC101927780|NR_110416.1	-	61556271,61560742,61565319,61569543,61570485	61556552,61565241,61565388,61569677,61570653	0.968410
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	151687233	151687251	151687244	-	High_confidence	73	82	234	8.908131	5.952384	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687280	MSTRG.32719.1	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687280	0.897436
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr16	72073244	72073245	72073244	+	High_confidence	81	82	91	3.464273	5.241984	chr16	72072861	72073376	LTR|ERV1|LTR10B	+	chr16	72073251	72077246	MSTRG.15444.6	+	72073251,72073891,72074283,72075144,72076302	72073293,72073977,72074385,72075219,72077246	0.890110
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr8	18851510	18851546	18851533	-	RAMPAGE_only	14	19	58	2.207998	4.589138	chr8	18851419	18851578	SINE|tRNA-Deu|AmnSINE2	-	chr8	18765448	18854374	PSD3|ENST00000519851.5	-	18765448,18799294,18801269,18804521,18804703,18854097	18765538,18799353,18801382,18804602,18804898,18854374	0.603448
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	134527596	134527597	134527596	+	High_confidence	17	19	19	0.723310	3.576618	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr14	58424075	58424078	58424075	-	RAMPAGE_only	4	4	12	0.456827	3.277613	chr14	58423952	58424081	LINE|CR1|L3	-	chr14	58408663	58427114	TIMM9|ENST00000556007.6	-	58408663,58410842,58411906,58424007,58427053	58409099,58410938,58411971,58424095,58427114	0.750000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	245860512	245860599	245860593	-	High_confidence	113	122	644	24.516396	6.569870	chr1	245860451	245860544	DNA|hAT-Tip100|UCON132b	-	chr1	245749366	245860584	MSTRG.3974.8	-	245749366,245764040,245858495,245860442	245749664,245764149,245858701,245860584	0.965839
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	26474333	26474341	26474340	+	RAMPAGE_only	4	7	15	0.571034	3.189898	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.866667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr19	5680203	5680261	5680234	-	High_confidence	25	28	151	5.748410	5.462886	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.993377
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	95169741	95169753	95169741	-	RAMPAGE_only	3	3	9	0.342620	2.750000	chr7	95169696	95169786	LINE|L1|L1ME1	+	chr7	95154712	95214332	AC002429.2|ENST00000417881.2	-	95154712,95174946,95176492,95214184	95156951,95175089,95176531,95214332	0.888889
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr8	99892056	99892057	99892056	-	RAMPAGE_only	486	486	532	20.252675	4.808604	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.975564
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr19	571725	571755	571754	-	High_confidence	3	7	13	0.494896	3.084963	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.769231
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	1655409	1655449	1655409	-	RAMPAGE_only	4	4	16	0.609103	3.500000	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	112602912	112603198	112603064	-	RAMPAGE_only	10	14	194	7.385374	5.971332	chr3	112601964	112603244	DNA|TcMar-Tigger|Tigger1	+	chr3	112596793	112641269	CCDC80|ENST00000206423.7	-	112596793,112607175,112609977,112616709,112618967,112630112,112638027,112640326	112605763,112607256,112610081,112616858,112619104,112630269,112639916,112641269	0.984536
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	153549103	153549134	153549105	-	High_confidence	22	29	67	2.550619	4.395474	chr1	153549066	153549188	SINE|MIR|MIRb	+	chr1	153547512	153549126	S100A3|ENST00000368712.1	-	153547512,153548344,153549027	153547846,153548490,153549126	0.880597
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr22	41256710	41256740	41256710	-	RAMPAGE_only	1	1	7	0.266483	2.584963	chr22	41256522	41256664	SINE|MIR|MIRb	-	chr22	41245614	41282514	RANGAP1|ENST00000455915.6	-	41245614,41249329,41249728,41251006,41252871,41254307,41256020,41256190,41256710,41257947,41261445,41264663,41268096,41274599,41280932	41246672,41249451,41249817,41251109,41252991,41254494,41256105,41256290,41256824,41258106,41261580,41264843,41268156,41274727,41282514	0.714286
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	134485443	134485490	134485443	-	High_confidence	14	14	114	4.339859	5.664692	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.973684
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	102431179	102431260	102431179	-	High_confidence	52	59	316	12.029784	5.882394	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.958861
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	35763037	35763038	35763037	+	High_confidence	16	16	20	0.761379	2.879506	chr7	35762878	35763437	LINE|L2|L2a	-	chr7	35763121	35763530	MSTRG.35837.1	+	35763121,35763488	35763404,35763530	0.850000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	54296593	54296735	54296710	+	RAMPAGE_only	5	5	55	2.093792	4.940636	chr4	54296613	54296722	DNA|hAT-Charlie|MER5B	-	chr4	54229096	54298247	PDGFRA|ENST00000257290.9	+	54229096,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54280315,54285370,54285840,54287429,54288798,54289008,54290312,54295124	54229415,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54280482,54285486,54285963,54287541,54288898,54289114,54290554,54298247	0.945455
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	78620056	78620057	78620056	+	High_confidence	12	15	15	0.571034	3.906891	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.800000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	212792435	212792445	212792444	-	High_confidence	4	4	9	0.342620	2.725481	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	3536476	3536516	3536476	-	High_confidence	6	6	24	0.913655	3.969002	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.583333
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	3929583	3929660	3929598	-	High_confidence	43	61	248	9.441097	6.057145	chr4	3927854	3930775	LTR|ERV1|HERVH-int	+	chr4	3915186	3929731	MSTRG.29194.2	-	3915186,3917820,3921623,3924070,3929541	3915272,3917901,3921782,3924267,3929731	0.657258
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr21	44962756	44962791	44962756	+	High_confidence	5	9	25	0.951723	3.855389	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44962765	44976973	MSTRG.25572.6	+	44962765,44967033,44973196,44976679	44962856,44967181,44973265,44976973	0.960000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	118835764	118835778	118835764	+	RAMPAGE_only	5	5	12	0.456827	3.251629	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118850687	119057934	SYNPO2|ENST00000610556.4	+	118850687,119023429,119026626,119029844,119057400	118850940,119023581,119027438,119032027,119057934	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	82093960	82094034	82093960	+	RAMPAGE_only	4	4	38	1.446620	4.315623	chr15	82093781	82094459	DNA|TcMar-Tigger|Tigger7	+	chr15	82088632	82095707	LINC01583|ENST00000559788.1	+	82088632,82091726,82095481	82088728,82091935,82095707	0.763158
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr19	566718	566730	566729	+	RAMPAGE_only	5	5	12	0.456827	2.845351	chr19	566638	566854	LTR|ERV1|LTR4	-	chr19	571276	583493	BSG|NM_198590.2	+	571276,579499,580378,580645,581314,582305,582513,582749	571579,579656,580461,580782,581591,582330,582582,583493	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	45192665	45192669	45192665	-	RAMPAGE_only	49	58	74	2.817101	5.359288	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	0.810811
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	121950281	121950292	121950291	+	RAMPAGE_only	7	7	14	0.532965	2.815072	chr12	121949929	121950482	LINE|L1|L1MB5	+	chr12	121952694	121959739	WDR66|ENST00000535257.1	+	121952694,121957073,121958271,121958942	121954334,121957268,121958522,121959739	0.928571
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	86453149	86453196	86453149	-	High_confidence	8	8	58	2.207998	4.909772	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016477	86453145	MAPK10|ENST00000310816.8	-	86016477,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86107222,86159297,86194335,86354529,86370713,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86107352,86159467,86194407,86354644,86370867,86453145	0.637931
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	127451050	127451105	127451087	-	High_confidence	8	8	27	1.027861	3.736007	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.962963
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	2881285	2881286	2881285	-	High_confidence	12	12	12	0.456827	2.918296	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr22	36481311	36481335	36481334	-	High_confidence	19	22	77	2.931308	4.504173	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.805195
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr18	36807868	36807870	36807869	-	High_confidence	6	8	10	0.380689	2.641604	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.700000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	6208681	6208682	6208681	-	High_confidence	215	216	217	8.260960	4.012088	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.981567
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	73072214	73072234	73072233	-	High_confidence	3	3	8	0.304552	2.521641	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.875000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	179269465	179269466	179269465	-	RAMPAGE_only	10	11	15	0.571034	3.039149	chr5	179269301	179269658	LTR|ERVL-MaLR|THE1B	-	chr5	179110850	179345430	ADAMTS2|NM_014244.4	-	179110850,179121660,179122643,179124972,179125997,179127958,179129931,179132229,179132776,179135908,179137768,179139889,179152141,179153490,179154048,179154813,179158722,179181071,179207512,179272910,179343766,179345189	179114324,179121750,179122773,179125180,179126130,179128118,179130098,179132310,179132900,179136042,179137944,179140035,179152255,179153623,179154192,179154919,179158879,179181155,179207715,179273064,179344161,179345430	0.733333
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	32505893	32505935	32505921	+	RAMPAGE_only	7	7	22	0.837517	3.617810	chr5	32505649	32506189	LTR|ERVL-MaLR|MLT1K	+	chr5	32529238	32601093	MSTRG.31109.1	+	32529238,32531821,32536637,32588511,32591562,32598960,32601004	32529383,32531916,32536695,32588584,32591685,32599069,32601093	0.636364
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	128570309	128570334	128570309	-	High_confidence	8	8	40	1.522758	4.753056	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.800000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	53811934	53811942	53811934	-	High_confidence	7	7	18	0.685241	3.852169	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.777778
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	179681665	179681684	179681665	+	RAMPAGE_only	7	8	15	0.571034	3.139572	chr3	179681222	179681750	LTR|ERV1|LTR6A	-	chr3	179653692	179784406	USP13|ENST00000496897.5	+	179653692,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653750,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179784406	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	123061141	123061322	123061296	-	High_confidence	21	21	197	7.499581	6.277559	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.944162
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr18	9117553	9117590	9117553	+	RAMPAGE_only	3	3	19	0.723310	3.239098	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	0.894737
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	166277614	166277626	166277622	-	High_confidence	11	14	26	0.989792	4.334963	chr1	166277610	166279338	LINE|L1|L1PREC2	-	chr1	166275628	166277597	AL596087.1|ENST00000400979.2	-	166275628	166277597	0.923077
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	133089587	133089695	133089692	+	RAMPAGE_only	6	6	47	1.789240	4.750877	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.978723
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	41871819	41871833	41871832	-	RAMPAGE_only	5	8	14	0.532965	2.950212	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.785714
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	35750017	35750070	35750017	+	High_confidence	80	104	269	10.240544	5.513594	chr7	35750039	35750075	LTR|ERVL|ERV3-16A3_LTR	+	chr7	35750043	35752415	MSTRG.35835.1	+	35750043,35752367	35750690,35752415	0.977695
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr21	28674853	28674856	28674853	-	High_confidence	6	6	12	0.456827	2.663533	chr21	28674675	28675025	LTR|ERVL-MaLR|MLT1A0	-	chr21	28439345	28674848	AF165147.1|ENST00000433310.6	-	28439345,28446289,28577218,28626584,28674646	28444809,28446472,28577380,28626676,28674848	0.916667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr14	102235416	102235481	102235416	-	High_confidence	29	29	139	5.291582	5.930052	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228840	102235424	MSTRG.12300.16	-	102228840,102232534,102233687,102235364	102229657,102232708,102233789,102235424	0.863309
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	52955040	52955041	52955040	+	RAMPAGE_only	13	13	13	0.494896	2.815072	chr6	52955078	52955376	SINE|Alu|AluSz6	+	chr6	52995619	52995950	RF00100|ENST00000365328.1	+	52995619	52995950	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	85330227	85330287	85330237	-	High_confidence	10	10	53	2.017654	5.171132	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85330327	MSTRG.13877.3	-	85314666,85330077	85314984,85330327	0.943396
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr21	28048446	28048447	28048446	+	High_confidence	9	9	10	0.380689	2.725481	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.900000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	33864065	33864114	33864081	+	RAMPAGE_only	4	4	21	0.799448	3.576618	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.904762
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	158631146	158631191	158631173	+	RAMPAGE_only	9	9	29	1.103999	4.253434	chr6	158631108	158631267	SINE|MIR|MIRc	-	chr6	158560090	158635305	MSTRG.35205.3	+	158560090,158573419,158580939,158583953,158585303,158589671,158605266,158607243,158608332,158608658,158623549,158625103,158625702,158631322,158631809	158560232,158573523,158580995,158584044,158585425,158589782,158605347,158607343,158608463,158608750,158623607,158625206,158625754,158631389,158635305	0.965517
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	84368705	84368713	84368712	-	High_confidence	3	3	8	0.304552	2.521641	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.750000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	151539250	151539266	151539265	-	RAMPAGE_only	8	9	21	0.799448	3.384184	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.857143
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	11201309	11201330	11201309	-	RAMPAGE_only	4	4	13	0.494896	2.855389	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.923077
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr14	50756701	50756737	50756736	-	RAMPAGE_only	3	3	9	0.342620	2.725481	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	91179462	91179526	91179462	-	High_confidence	4055	4173	19771	752.660971	7.453780	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.929644
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	174118122	174118130	174118129	-	High_confidence	3	5	10	0.380689	2.503258	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075189	174118051	MSTRG.23089.4	-	174075189,174078967,174081151,174081923,174117982	174075527,174079090,174081248,174082001,174118051	0.900000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	74715652	74715690	74715689	+	High_confidence	5	5	12	0.456827	2.625815	chr5	74715734	74716041	SINE|Alu|AluSx1	+	chr5	74715585	74721288	HEXB|ENST00000513336.5	+	74715585,74718290,74718796,74720427,74720642,74721117	74715690,74718363,74718971,74720518,74720747,74721288	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr10	45000503	45000515	45000503	+	High_confidence	8	8	23	0.875586	4.186704	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.956522
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	38886897	38886942	38886938	-	RAMPAGE_only	21	41	141	5.367720	5.803540	chr15	38886756	38887137	LTR|ERVL-MaLR|MLT1J2	-	chr15	38883152	39018543	MSTRG.12794.3	-	38883152,38886696,38974154,39018501	38885628,38886929,38974235,39018543	0.921986
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr10	70425352	70425385	70425384	+	RAMPAGE_only	4	6	11	0.418758	2.663533	chr10	70424911	70425430	LTR|ERVL-MaLR|MLT1F1	-	chr10	70404712	70428618	MSTRG.4889.2	+	70404712,70419913,70421715	70405116,70420099,70428618	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	162781344	162781372	162781361	+	RAMPAGE_only	15	20	40	1.522758	3.643141	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162767236	162786600	MSTRG.2888.6	+	162767236,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162767359,162770566,162772247,162773596,162775843,162776370,162778729,162786600	0.975000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	194632752	194632753	194632752	+	High_confidence	8	8	8	0.304552	2.500000	chr3	194632668	194632869	SINE|MIR|MIR	-	chr3	194632922	194645401	AC046143.1|ENST00000447139.1	+	194632922,194644674	194633167,194645401	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr13	113187319	113187360	113187359	-	High_confidence	3	4	12	0.456827	2.732159	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr10	103181328	103181329	103181328	-	RAMPAGE_only	15	15	15	0.571034	3.640224	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.733333
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	32505996	32506036	32506035	+	RAMPAGE_only	6	6	40	1.522758	4.554124	chr5	32505649	32506189	LTR|ERVL-MaLR|MLT1K	+	chr5	32529238	32601093	MSTRG.31109.1	+	32529238,32531821,32536637,32588511,32591562,32598960,32601004	32529383,32531916,32536695,32588584,32591685,32599069,32601093	0.750000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	54759973	54759974	54759973	-	High_confidence	18	22	26	0.989792	3.210861	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.961538
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	42403636	42403828	42403708	-	RAMPAGE_only	32	32	146	5.558065	5.678932	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	0.993151
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr13	43055406	43055412	43055406	+	RAMPAGE_only	117	121	202	7.689925	5.662310	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.569307
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	90997037	90997038	90997037	+	High_confidence	20	21	26	0.989792	3.565448	chr9	90996845	90997203	LTR|ERVL-MaLR|THE1B	+	chr9	90997053	91001871	AL355607.2|ENST00000563268.1	+	90997053,90997595,91000769	90997124,90997817,91001871	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	172954093	172954131	172954093	+	High_confidence	6	9	19	0.723310	3.576618	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172954055	172969716	MSTRG.32935.1	+	172954055,172959864,172968458,172969412	172954336,172960041,172968599,172969716	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	171555858	171555880	171555858	+	RAMPAGE_only	2	2	8	0.304552	2.521641	chr2	171555665	171555905	SINE|MIR|MIR	-	chr2	171522476	171557646	CYBRD1|ENST00000375252.3	+	171522476,171553345,171554523	171522738,171553500,171557646	0.875000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	43013464	43013548	43013471	-	High_confidence	9	15	67	2.550619	5.324549	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.970149
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	66502611	66502749	66502611	-	High_confidence	76	76	1191	45.340105	6.450719	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.913518
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	19344384	19344410	19344401	-	RAMPAGE_only	4	4	20	0.761379	3.471354	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.950000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr20	44696111	44696112	44696111	-	High_confidence	12	14	14	0.532965	3.182006	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	17352281	17352298	17352281	+	High_confidence	6	9	24	0.913655	4.061482	chr11	17352168	17352474	SINE|Alu|AluY	-	chr11	17352448	17383531	MSTRG.6187.3	+	17352448,17356650,17367008,17368866,17372005	17352683,17357001,17367347,17368964,17383531	0.750000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	172954037	172954067	172954066	+	High_confidence	3	3	13	0.494896	3.238901	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172954055	172969716	MSTRG.32935.1	+	172954055,172959864,172968458,172969412	172954336,172960041,172968599,172969716	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	191425524	191425528	191425527	+	High_confidence	22	29	39	1.484689	4.736216	chr3	191425335	191425687	LTR|ERVL-MaLR|THE1B	+	chr3	191425527	191591097	AC073365.1|ENST00000641055.1	+	191425527,191473550,191557261,191559677,191569599,191573313,191589902	191425604,191473688,191557384,191559750,191569824,191573474,191591097	0.846154
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	65422500	65422501	65422500	+	RAMPAGE_only	6	7	8	0.304552	2.521641	chr1	65422070	65422538	LTR|ERVL-MaLR|MLT1C	+	chr1	65420715	65436007	LEPROT|NM_001198681.1	+	65420715,65421327,65425302,65429861,65431802	65420740,65421459,65425378,65430048,65436007	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	59619874	59619923	59619894	+	High_confidence	595	696	2817	107.240198	6.153999	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.905573
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr19	16102231	16102507	16102303	+	RAMPAGE_only	1433	1445	4704	179.076284	5.042304	chr19	16102068	16102357	SINE|Alu|AluSz	+	chr19	16088710	16102946	TPM4|ENST00000591645.2	+	16088710,16089044,16093535,16093683,16101263	16088849,16089120,16093598,16093753,16102946	0.994473
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	128921956	128921961	128921956	+	High_confidence	2	4	8	0.304552	2.500000	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.875000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	107580475	107580507	107580475	+	High_confidence	4	4	11	0.418758	2.913977	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.727273
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	34988756	34988765	34988764	-	High_confidence	7	7	12	0.456827	3.027169	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.833333
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	125110597	125110605	125110597	-	High_confidence	6	7	12	0.456827	3.459432	chr3	125110543	125110700	DNA|hAT-Charlie|MER5A	-	chr3	125107880	125110718	SLC12A8|ENST00000479231.1	-	125107880,125110188	125108126,125110718	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr21	29077476	29077517	29077479	+	High_confidence	4	4	20	0.761379	3.721928	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077470	29175889	MAP3K7CL|NM_020152.3	+	29077470,29080551,29085071,29085812,29091500,29091667,29092438,29149188,29159940,29174711	29077713,29080708,29085143,29085917,29091576,29091761,29092581,29149250,29160056,29175889	0.700000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	99906523	99906551	99906523	-	High_confidence	3	3	7	0.266483	2.584963	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.857143
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	8384043	8384050	8384046	-	High_confidence	13	13	30	1.142068	3.440760	chr17	8384033	8384050	SINE|Alu|AluSq	-	chr17	8377515	8383250	RPL26|ENST00000293842.10	-	8377515,8379795,8382142,8383156	8377692,8379936,8382315,8383250	0.866667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	134432378	134432436	134432435	-	High_confidence	27	30	173	6.585926	5.036199	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.971098
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	127084214	127084222	127084221	-	High_confidence	8	8	14	0.532965	2.653544	chr2	127084080	127084233	DNA|hAT-Charlie|MER5A1	+	chr2	127048022	127084550	BIN1|NM_001320642.1	-	127048022,127050420,127050801,127051153,127052254,127053421,127053904,127057472,127059010,127062114,127063570,127063932,127068162,127068923,127069994,127070552,127070761,127076625,127083588	127048633,127050522,127050912,127051243,127052362,127053445,127054012,127057601,127059155,127062197,127063646,127064018,127068255,127069031,127070090,127070647,127070816,127076706,127084550	0.928571
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr10	32446972	32446978	32446977	+	High_confidence	4	4	9	0.342620	2.641604	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	73683420	73683443	73683430	-	High_confidence	40	44	193	7.347305	5.715451	chr7	73683365	73683430	LINE|RTE-BovB|MamRTE1	+	chr7	73680917	73683451	DNAJC30|NM_032317.2	-	73680917	73683451	0.989637
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	79631258	79631303	79631273	+	High_confidence	14	14	68	2.588688	4.587268	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	67791731	67791754	67791731	-	RAMPAGE_only	18	18	43	1.636964	4.475071	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701474	67832054	MSTRG.1546.2	-	67701474,67707593,67777457,67831818	67705576,67707712,67777507,67832054	0.906977
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr19	9140390	9140428	9140393	+	High_confidence	32	32	138	5.253513	6.098561	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.644928
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr19	3062922	3062940	3062939	-	High_confidence	7	8	19	0.723310	3.471354	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	155058736	155058773	155058772	+	High_confidence	7	7	17	0.647172	3.454822	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	112649428	112649461	112649428	-	High_confidence	3	3	9	0.342620	2.725481	chr3	112649368	112649995	LINE|L2|L2c	+	chr3	112640720	112649447	CCDC80|ENST00000473959.5	-	112640720,112640923,112643261,112649315	112640837,112641038,112643457,112649447	0.777778
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr18	2589112	2589121	2589120	+	RAMPAGE_only	17	31	52	1.979585	4.719295	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	52708380	52708381	52708380	-	RAMPAGE_only	14	14	19	0.723310	3.461320	chr1	52708320	52708479	LINE|L2|L2c	+	chr1	52684450	52698366	COA7|ENST00000371538.4	-	52684450,52692726,52698220	52688168,52692867,52698366	0.894737
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	129489063	129489126	129489125	+	High_confidence	16	18	44	1.675033	4.879664	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.931818
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chrX	81262650	81262673	81262653	+	RAMPAGE_only	10	11	33	1.256275	4.131300	chrX	81262192	81262806	LINE|L1|L1MD3	+	chrX	81255493	81297516	SH3BGRL|ENST00000474113.1	+	81255493,81276983,81278330,81297194	81255643,81277169,81278411,81297516	0.696970
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr16	53867291	53867317	53867316	+	RAMPAGE_only	12	12	22	0.837517	3.820889	chr16	53867245	53867493	LINE|L1|L1MCa	+	chr16	53879843	54153448	FTO|ENST00000612285.2	+	53879843,53888831,53933984,54111761,54152113	53879987,53888951,53934109,54111889,54153448	0.681818
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	152347679	152347680	152347679	-	RAMPAGE_only	16	16	16	0.609103	3.327820	chr5	152347584	152347683	DNA|TcMar-Mariner|MADE1	+	chr5	151661095	151687280	MSTRG.32719.1	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687280	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr22	39021127	39021151	39021127	+	High_confidence	5	6	17	0.647172	3.202820	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.882353
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	162781435	162781606	162781533	+	RAMPAGE_only	53	56	209	7.956408	5.330860	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162767236	162786600	MSTRG.2888.6	+	162767236,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162767359,162770566,162772247,162773596,162775843,162776370,162778729,162786600	0.985646
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	35699133	35699149	35699148	-	High_confidence	4	5	15	0.571034	2.950212	chr9	35699139	35699218	LTR|Gypsy|LTR81B	+	chr9	35698043	35699328	TLN1|ENST00000489255.2	-	35698043,35698322,35698616,35698807,35699031	35698172,35698505,35698679,35698933,35699328	0.533333
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr8	73964627	73964628	73964627	-	RAMPAGE_only	5	5	7	0.266483	2.521641	chr8	73964514	73964649	SINE|Alu|FLAM_C	+	chr8	73946263	73970637	ELOC|ENST00000519487.5	-	73946263,73955910,73959764,73970578	73946820,73956054,73959818,73970637	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	99410041	99410052	99410046	+	RAMPAGE_only	6	6	17	0.647172	3.337175	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.823529
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	84888955	84888994	84888987	+	RAMPAGE_only	7	7	18	0.685241	3.725481	chr2	84888559	84889155	LINE|L2|L2b	-	chr2	84905624	84906675	TMSB10|ENST00000233143.5	+	84905624,84906002,84906388	84905718,84906117,84906675	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	101217578	101217599	101217578	-	High_confidence	11	11	51	1.941516	4.621115	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.921569
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chrX	16712889	16712921	16712889	-	High_confidence	9	9	22	0.837517	3.646439	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.909091
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	64439294	64439308	64439294	+	RAMPAGE_only	10	10	17	0.647172	3.250000	chr12	64439324	64439679	DNA|hAT-Charlie|Charlie4a	+	chr12	64404372	64448684	XPOT|NM_007235.4	+	64404372,64409961,64414906,64416697,64418045,64418875,64420069,64420352,64421234,64423004,64423181,64424598,64425037,64425337,64425814,64428050,64430048,64431537,64433413,64434506,64434793,64435626,64439243,64445074,64448104	64404804,64410095,64414989,64416754,64418115,64419094,64420254,64420521,64421471,64423043,64423244,64424723,64425182,64425457,64425909,64428120,64430287,64431823,64433603,64434623,64434909,64435674,64439315,64445131,64448684	0.941176
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	25861730	25861747	25861746	+	High_confidence	10	12	21	0.799448	4.037401	chr4	25861658	25861751	DNA|hAT?|UCON80	+	chr4	25861829	25929545	SMIM20|ENST00000515764.2	+	25861829,25928312,25929153	25862153,25928369,25929545	0.857143
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	112602575	112602781	112602575	-	RAMPAGE_only	16	16	164	6.243306	5.561859	chr3	112601964	112603244	DNA|TcMar-Tigger|Tigger1	+	chr3	112596793	112641269	CCDC80|ENST00000206423.7	-	112596793,112607175,112609977,112616709,112618967,112630112,112638027,112640326	112605763,112607256,112610081,112616858,112619104,112630269,112639916,112641269	0.987805
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	187513649	187513653	187513652	-	High_confidence	14	19	27	1.027861	4.103910	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	0.851852
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	63625065	63625130	63625065	-	RAMPAGE_only	6	6	35	1.332413	4.300554	chr11	63624954	63625088	DNA|hAT-Charlie|MER5A	+	chr11	63624086	63671612	ATL3|ENST00000398868.7	-	63624086,63631039,63633025,63635533,63636206,63643356,63644168,63646506,63651935,63652470,63658760,63659037,63671289	63629405,63631471,63633097,63635590,63636334,63643495,63644261,63646563,63651986,63652575,63658904,63659252,63671612	0.971429
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	97521630	97521662	97521630	-	High_confidence	5	5	13	0.494896	3.392747	chr15	97521399	97521640	SINE|tRNA|LFSINE_Vert	+	chr15	97370370	97521811	LINC02254|ENST00000558621.2	-	97370370,97397656,97427650,97515286,97521580	97371341,97397740,97427952,97515424,97521811	0.615385
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chrX	44951147	44951148	44951147	+	RAMPAGE_only	13	15	15	0.571034	3.640224	chrX	44950752	44951268	LTR|ERV1|LTR10D	+	chrX	44873551	45111411	KDM6A|ENST00000621147.4	+	44873551,44873923,44961283,44974665,45010960,45020609,45034930,45037654,45053828,45059005,45059246,45061323,45063421,45069578,45076696,45078399,45107456,45110078,45111381	44873712,44873987,44961392,44974715,45011019,45020730,45034985,45037689,45053955,45059104,45059466,45061419,45063817,45070357,45076826,45078493,45107536,45110249,45111411	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	13386132	13386133	13386132	+	RAMPAGE_only	31	34	41	1.560826	4.534184	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.951220
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	3380960	3380961	3380960	+	High_confidence	33	35	36	1.370482	4.204582	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.777778
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	104030726	104030747	104030726	+	High_confidence	62	62	117	4.454066	5.591016	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.974359
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	51403428	51403485	51403432	-	RAMPAGE_only	4	7	33	1.256275	3.352536	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.939394
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	16017955	16017970	16017955	-	High_confidence	7	7	12	0.456827	2.913977	chr1	16017886	16017984	LINE|CR1|L3	+	chr1	16015498	16018005	HSPB7|ENST00000406363.2	-	16015498,16017073,16017764	16015759,16017219,16018005	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	166252451	166252482	166252451	-	High_confidence	48	50	206	7.842201	6.293438	chr5	166252288	166252597	SINE|Alu|AluSz	+	chr5	166204340	166252444	MSTRG.32850.1	-	166204340,166252281	166205488,166252444	0.776699
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	122322369	122322392	122322389	-	RAMPAGE_only	7	7	28	1.065930	4.060262	chr11	122322142	122322989	LINE|L2|L2c	+	chr11	122232857	122309487	MIR100HG|ENST00000529804.6	-	122232857,122292283,122293306,122309249	122233416,122292403,122293606,122309487	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	33068824	33068898	33068840	-	RAMPAGE_only	4	8	23	0.875586	3.594466	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.913043
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr22	50785260	50785270	50785269	+	RAMPAGE_only	3	3	7	0.266483	2.521641	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	104864942	104865040	104864942	+	RAMPAGE_only	67	68	606	23.069776	6.400343	chr12	104863461	104865746	LINE|L1|HAL1	-	chr12	104870163	104871616	MSTRG.9634.1	+	104870163	104871616	0.929043
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	16981569	16981642	16981569	-	High_confidence	11	12	82	3.121653	4.470929	chr1	16981567	16981905	LTR|ERV1|LTR64	+	chr1	16974501	16981586	MFAP2|NM_001135247.1	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16981513	16975023,16975342,16975730,16976545,16976794,16976923,16977195,16978314,16981586	0.975610
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	112649623	112649645	112649623	-	High_confidence	7	7	12	0.456827	3.188722	chr3	112649368	112649995	LINE|L2|L2c	+	chr3	112640765	112649530	CCDC80|ENST00000480275.1	-	112640765,112643261,112649315	112641038,112643457,112649530	0.916667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	43508348	43508349	43508348	+	RAMPAGE_only	4	4	6	0.228414	2.584963	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr14	95516099	95516123	95516119	+	High_confidence	6	11	29	1.103999	4.090234	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.931034
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	202135838	202135856	202135838	+	High_confidence	9	11	22	0.837517	3.880180	chr2	202135840	202135976	SINE|MIR|MIRc	+	chr2	202135715	202197862	KIAA2012|ENST00000469462.1	+	202135715,202154672,202165283,202184752,202186932,202188151,202190173,202193300,202194189,202196799	202138508,202154810,202165356,202184843,202187098,202188266,202190493,202193503,202194362,202197862	0.772727
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr20	37298760	37298761	37298760	+	RAMPAGE_only	33	33	35	1.332413	3.444008	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.942857
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr13	43055454	43055480	43055454	+	RAMPAGE_only	8	8	34	1.294344	3.664717	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	2242922	2242923	2242922	+	High_confidence	15	15	15	0.571034	3.773557	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	3929721	3929728	3929727	-	High_confidence	10	11	21	0.799448	3.784942	chr4	3927854	3930775	LTR|ERV1|HERVH-int	+	chr4	3915186	3929731	MSTRG.29194.2	-	3915186,3917820,3921623,3924070,3929541	3915272,3917901,3921782,3924267,3929731	0.809524
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr22	37855566	37855602	37855584	+	RAMPAGE_only	7	9	32	1.218206	4.351410	chr22	37855622	37855711	SINE|tRNA|LFSINE_Vert	+	chr22	37858564	37871290	EIF3L|ENST00000464790.1	+	37858564,37862968,37863271,37870175,37871199	37858740,37863038,37863345,37870347,37871290	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr22	28724885	28724886	28724885	-	High_confidence	30	30	30	1.142068	4.415061	chr22	28724569	28724864	SINE|Alu|AluSp	-	chr22	28699763	28725248	CHEK2|ENST00000439346.5	-	28699763,28703504,28710005,28711908,28724976,28725242	28699937,28703566,28710059,28712017,28725124,28725248	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	102141879	102141907	102141906	+	High_confidence	2	2	7	0.266483	2.807355	chr2	102141941	102142029	SINE|MIR|MIR3	+	chr2	102141818	102176377	IL1R1|ENST00000428279.5	+	102141818,102153940,102164773,102165114,102166112,102168597,102171800,102172686,102174586,102175477,102176352	102141999,102154017,102165008,102165304,102166281,102168663,102171918,102172838,102174730,102175645,102176377	0.714286
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	39118688	39118737	39118725	-	High_confidence	21	22	124	4.720548	6.109084	chr15	39113911	39121297	LINE|L1|L1PA16	+	chr15	38885154	39118729	MSTRG.12794.4	-	38885154,38886696,38974154,39071502,39109700,39118649	38885628,38886929,38974235,39071608,39109798,39118729	0.564516
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	201427175	201427176	201427175	-	RAMPAGE_only	12	12	12	0.456827	3.418296	chr1	201427119	201427295	SINE|MIR|MIR	-	chr1	201408863	201429866	TNNI1|ENST00000336092.8	-	201408863,201410325,201411356,201413031,201414517,201415212,201417115,201417782,201421672,201427174,201428837,201429698	201409250,201410435,201411533,201413121,201414649,201415254,201417119,201417812,201421726,201427293,201429274,201429866	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	156752094	156752117	156752110	-	High_confidence	3	3	15	0.571034	3.006239	chr1	156752098	156752165	LINE|L2|L2c	-	chr1	156742106	156752232	HDGF|NM_001126051.1	-	156742106,156743651,156744162,156745007,156745296,156752037	156743455,156743878,156744348,156745146,156745373,156752232	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	140700445	140700452	140700445	+	High_confidence	2306	2928	4712	179.380835	4.757453	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.989813
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	55982724	55982800	55982799	-	High_confidence	12	12	58	2.207998	5.350262	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.931034
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	39571583	39571585	39571584	+	RAMPAGE_only	4	7	10	0.380689	2.846439	chr2	39571462	39571913	LINE|L2|L2c	+	chr2	39437415	39601344	AC007388.1|ENST00000449569.5	+	39437415,39453838,39454296,39516413,39518582,39599365	39437535,39453931,39454365,39516541,39518710,39601344	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	72846148	72846149	72846148	+	RAMPAGE_only	7	7	11	0.418758	3.459432	chr5	72846047	72846453	LINE|L1|L1ME3A	+	chr5	72848102	72914388	TNPO1|NM_153188.2	+	72848102,72848384,72851243,72855773,72861807,72865595,72872638,72875614,72877227,72882466,72883063,72887069,72888077,72889785,72891809,72893138,72893376,72893615,72896457,72897055,72900005,72900973,72903708,72905302,72908708	72848251,72848498,72851319,72855923,72861914,72865729,72872720,72875737,72877346,72882527,72883232,72887222,72888303,72889957,72891896,72893246,72893535,72893703,72896556,72897151,72900081,72901073,72903783,72905445,72914388	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	171268995	171268998	171268995	+	High_confidence	82	86	142	5.405789	5.486328	chr1	171268815	171269160	LTR|ERVL-MaLR|THE1B	+	chr1	171269009	171285521	MSTRG.3009.7	+	171269009,171275345,171278728,171280785,171281977,171283143,171285201	171269086,171275508,171278871,171280985,171282333,171283216,171285521	0.929577
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	32403108	32403149	32403116	-	RAMPAGE_only	12	15	55	2.093792	4.817368	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354350	32444496	MSTRG.31101.2	-	32354350,32363947,32364163,32379114,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228	32355939,32364045,32364275,32379210,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444496	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr21	28090087	28090089	28090087	+	High_confidence	4	7	11	0.418758	2.732159	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28089888	28102790	LINC01697|ENST00000423808.2	+	28089888,28102549	28090521,28102790	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	159976825	159976852	159976846	+	RAMPAGE_only	2	2	8	0.304552	2.500000	chr1	159976818	159976895	SINE|Alu|FLAM_A	+	chr1	159961223	159979061	LINC01133|ENST00000423943.1	+	159961223,159976643,159978599	159961405,159977112,159979061	0.875000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	134875055	134875065	134875055	+	High_confidence	4	4	15	0.571034	3.182006	chr5	134874872	134875108	SINE|MIR|MIRb	-	chr5	134875095	134888180	TXNDC15|ENST00000508810.1	+	134875095,134887694	134875188,134888180	0.533333
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	70753181	70753182	70753181	-	RAMPAGE_only	7	7	8	0.304552	2.521641	chr15	70753130	70753317	LINE|L1|L1M5	+	chr15	70654553	70763511	UACA|NM_018003.2	-	70654553,70660150,70664661,70666723,70671038,70671964,70676492,70677107,70678098,70679607,70682757,70684264,70687539,70687749,70690453,70691298,70695016,70699526,70763329	70657127,70660216,70664814,70669462,70671091,70672001,70676591,70677140,70678206,70679676,70682795,70684446,70687646,70687820,70690511,70691363,70695105,70699660,70763511	0.875000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	148279242	148279274	148279270	+	High_confidence	39	42	225	8.565511	6.435866	chr1	148279033	148279814	LINE|L1|L1MEc	+	chr1	148279217	148291698	MSTRG.2427.1	+	148279217,148287689	148279531,148291698	0.804444
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr8	38825352	38825367	38825366	+	RAMPAGE_only	4	4	9	0.342620	2.947703	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	115939587	115939619	115939587	+	High_confidence	35	41	122	4.644410	5.259981	chr9	115939412	115941194	LINE|L1|L1MB7	-	chr9	115939606	115956454	MSTRG.40526.1	+	115939606,115956095	115939664,115956454	0.573770
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	20658577	20658624	20658623	+	High_confidence	5	5	16	0.609103	2.780639	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658320	20995948	MSTRG.39549.3	+	20658320,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	101308293	101308325	101308324	+	High_confidence	11	11	70	2.664826	5.321721	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	6507758	6507790	6507761	+	RAMPAGE_only	6	6	22	0.837517	3.884184	chr3	6507654	6507944	SINE|Alu|AluYi6	-	chr3	6490478	6736129	AC069277.1|ENST00000433639.1	+	6490478,6717568,6724449,6732270,6735661	6490672,6717667,6724546,6732495,6736129	0.772727
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	154928503	154928515	154928503	+	High_confidence	30	31	54	2.055723	4.926093	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.888889
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	9554953	9554966	9554953	-	High_confidence	18	19	54	2.055723	4.808232	chr2	9554869	9555063	DNA|hAT-Tip100?|MamRep1879	-	chr2	9488636	9554729	ADAM17|ENST00000648548.1	-	9488636,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152,9551474,9554708	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526264,9527954,9535922,9536828,9543285,9551757,9554729	0.925926
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	203533429	203533449	203533429	-	RAMPAGE_only	9	9	21	0.799448	3.826875	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203394344	203535262	RAPH1|ENST00000457812.5	-	203394344,203444867,203447958,203448737,203454429,203455436,203457529,203459906,203461248,203461847,203489583,203491213,203495233,203535110	203395089,203445010,203448079,203448836,203454540,203455580,203457595,203460028,203461408,203461925,203490089,203491319,203495353,203535262	0.714286
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr8	32927963	32927984	32927976	+	RAMPAGE_only	188	198	465	17.702056	6.665749	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.933333
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	53464763	53464785	53464774	+	RAMPAGE_only	2	2	9	0.342620	2.750000	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.888889
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	40815713	40815742	40815713	+	RAMPAGE_only	8	8	16	0.609103	3.640224	chr7	40810256	40816712	LINE|L1|L1PA16	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.875000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	158167223	158167224	158167223	-	RAMPAGE_only	13	13	15	0.571034	3.182006	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158124579	158172566	FAM198B|NM_016613.6	-	158124579,158130785,158155610,158170465,158172338	158127614,158131012,158155825,158171599,158172566	0.933333
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	32221716	32221749	32221748	+	High_confidence	5	5	15	0.571034	3.240224	chr1	32221596	32221823	SINE|MIR|MIRb	-	chr1	32221583	32231604	EIF3I|NM_003757.3	+	32221583,32222357,32222537,32224033,32224409,32226170,32226402,32228498,32228726,32229134,32230926,32231114	32222032,32222444,32222630,32224121,32224475,32226320,32226530,32228609,32228816,32229208,32231019,32231604	0.800000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	182049978	182050008	182050001	+	RAMPAGE_only	3	3	12	0.456827	3.095795	chr2	182049629	182050022	LINE|L1|L1MEg1	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	2867841	2867851	2867850	+	High_confidence	7	7	15	0.571034	3.240224	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	39118775	39118798	39118797	-	High_confidence	5	5	12	0.456827	3.095795	chr15	39113911	39121297	LINE|L1|L1PA16	+	chr15	38885154	39118729	MSTRG.12794.4	-	38885154,38886696,38974154,39071502,39109700,39118649	38885628,38886929,38974235,39071608,39109798,39118729	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	125123613	125123618	125123617	-	High_confidence	10	15	22	0.837517	3.884184	chr3	125123512	125123811	LTR|ERVL-MaLR|THE1B	-	chr3	125083142	125123599	SLC12A8|ENST00000465475.5	-	125083142,125107480,125110188,125118768,125120598,125123529	125084052,125108126,125110335,125118856,125120686,125123599	0.681818
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	196715643	196715754	196715668	+	RAMPAGE_only	8	10	58	2.207998	4.834118	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.965517
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	17282914	17282940	17282914	+	RAMPAGE_only	5	5	17	0.647172	3.690117	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276764	17332211	NUCB2|ENST00000529010.5	+	17276764,17282788,17295323,17296103,17301743,17309571,17310824,17311192,17311871,17312027,17315385,17330126,17330901,17331411	17276828,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17332211	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	112935972	112936022	112936000	-	High_confidence	5	6	23	0.875586	3.551191	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	209742580	209742617	209742580	-	High_confidence	14	15	31	1.180137	4.389898	chr1	209742384	209742599	DNA|hAT-Blackjack|MER63A	-	chr1	209661358	209742562	LOC101930114|NR_134510.1	-	209661358,209662910,209742496	209661567,209663061,209742562	0.612903
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr20	46684487	46684495	46684487	-	High_confidence	8	8	14	0.532965	3.521641	chr20	46684315	46684677	LTR|ERVL-MaLR|THE1C	-	chr20	46557822	46684485	SLC13A3|NM_001193340.1	-	46557822,46563413,46566228,46575572,46583571,46589159,46592403,46596156,46599970,46610445,46613459,46670042,46684395	46560198,46563551,46566390,46575685,46583669,46589255,46592529,46596342,46600037,46610609,46613725,46670139,46684485	0.785714
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	77491284	77491319	77491290	-	High_confidence	5	5	14	0.532965	3.085055	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77453865	77491285	WDR41|ENST00000504895.5	-	77453865,77459061,77463094,77464760,77489456,77491192	77453928,77459124,77463226,77464809,77489572,77491285	0.714286
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr14	61702342	61702365	61702342	+	RAMPAGE_only	11	11	23	0.875586	3.240528	chr14	61702145	61702467	SINE|Alu|AluSx	+	chr14	61698894	61727632	HIF1A|ENST00000557206.1	+	61698894,61720381,61721508,61721738,61726705,61727452	61698946,61720572,61721654,61721823,61726818,61727632	0.956522
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr10	65570509	65570537	65570521	+	High_confidence	15	19	52	1.979585	5.028758	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570528	65675961	MSTRG.4820.5	+	65570528,65571424,65572934,65585484,65615635,65675772	65570759,65571579,65573056,65585802,65615761,65675961	0.615385
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	122322566	122322567	122322566	-	RAMPAGE_only	6	6	8	0.304552	2.500000	chr11	122322142	122322989	LINE|L2|L2c	+	chr11	122089195	122309451	MIR100HG|ENST00000648734.1	-	122089195,122155550,122180335,122202763,122292283,122309249	122091719,122155632,122180398,122202909,122292403,122309451	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	135965670	135965749	135965723	+	High_confidence	23	31	212	8.070615	5.897367	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.990566
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	108885821	108885840	108885839	-	RAMPAGE_only	4	5	8	0.304552	2.521641	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108867516	108893083	ELP1|ENST00000495759.5	-	108867516,108874894,108875632,108877994,108878622,108879445,108880051,108881704,108882124,108889331,108891202,108892985	108869182,108874970,108875735,108878149,108878750,108879557,108880165,108881765,108882187,108889393,108891404,108893083	0.875000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	123071583	123071608	123071602	-	RAMPAGE_only	3	6	15	0.571034	3.182006	chr11	123071468	123071735	SINE|Alu|AluSx1	+	chr11	123069864	123195281	CLMP|ENST00000448775.3	-	123069864,123074701,123083084,123083679,123084511,123097794,123194912	123073774,123074843,123083207,123083847,123084713,123097952,123195281	0.933333
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	111393010	111393023	111393010	-	RAMPAGE_only	3	3	10	0.380689	2.921928	chr7	111392522	111393282	LTR|ERVL|MER21C	-	chr7	110663300	111390750	IMMP2L|ENST00000489381.1	-	110663300,110664823,110963499,111390570	110663721,110665012,110963565,111390750	0.600000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	21551143	21551166	21551148	-	High_confidence	4	7	16	0.609103	3.452820	chr17	21551016	21551106	DNA|hAT-Charlie|Charlie16a	-	chr17	21428380	21551669	C17orf51|ENST00000649112.1	-	21428380,21431437,21433669,21440273,21441975,21535427,21550995	21430817,21431588,21433800,21440469,21442118,21535538,21551669	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	193115700	193115736	193115735	-	RAMPAGE_only	4	6	14	0.532965	3.180833	chr1	193115475	193116605	LINE|L1|L1MCa	+	chr1	193096466	193106535	GLRX2|NM_001319291.1	-	193096466,193097583,193101140,193106514	193096759,193097760,193101204,193106535	0.785714
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	91179325	91179326	91179325	-	High_confidence	6	7	7	0.266483	2.584963	chr12	91179305	91179397	SINE|MIR|MIRb	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.857143
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	179877288	179877306	179877305	-	High_confidence	5	5	9	0.342620	2.947703	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179865064	179877790	TOR1AIP2|ENST00000495650.1	-	179865064,179877692	179865854,179877790	0.555556
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	38868449	38868481	38868480	-	High_confidence	4	4	11	0.418758	3.121928	chr15	38868391	38869144	DNA|hAT-Charlie|Charlie25	-	chr15	38865547	38868430	MSTRG.12794.2	-	38865547,38867969,38868328	38865722,38868158,38868430	0.636364
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	82898735	82898756	82898735	-	RAMPAGE_only	4	4	12	0.456827	3.084963	chr4	82898735	82899382	LINE|L1|L1MB8	+	chr4	82893544	82900508	THAP9-AS1|ENST00000504792.6	-	82893544,82899712,82900076,82900333	82895774,82899737,82900223,82900508	0.750000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	182873973	182874000	182873999	+	High_confidence	4	4	14	0.532965	2.549523	chr3	182874046	182874599	DNA|hAT-Charlie|Cheshire	+	chr3	182873965	182919063	ATP11B|ENST00000466758.5	+	182873965,182879495,182880878,182884752,182885950,182887585,182889409,182896699,182897302,182898606,182902480,182908458,182913860,182918022	182874015,182879649,182880947,182884898,182886010,182887713,182889548,182896765,182897406,182898772,182902566,182908505,182913994,182919063	0.928571
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	149509878	149509920	149509878	-	RAMPAGE_only	8	8	72	2.740964	4.368220	chr5	149509722	149509839	SINE|Alu|AluJb	-	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.861111
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chrX	19650407	19650410	19650407	-	RAMPAGE_only	4	5	9	0.342620	2.725481	chrX	19650232	19650597	LTR|ERVL-MaLR|THE1C	-	chrX	19592067	19664715	SH3KBP1|ENST00000477102.1	-	19592067,19594948,19601499,19607937,19631863,19645399,19664688	19592147,19595000,19601650,19608045,19631958,19645475,19664715	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	95121531	95121560	95121559	-	High_confidence	3	3	11	0.418758	2.845351	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	157533600	157533651	157533600	-	High_confidence	51	52	103	3.921101	5.544653	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157460214	157533606	VEPH1|ENST00000487753.5	-	157460214,157470313,157495211,157533512	157460355,157470529,157495506,157533606	0.922330
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	6469597	6469625	6469597	-	High_confidence	2	2	6	0.228414	2.584963	chr7	6469259	6469573	SINE|Alu|AluSx3	-	chr7	6461761	6470406	KDELR2|ENST00000454368.2	-	6461761,6466070,6469595	6463175,6466323,6470406	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	2838253	2838261	2838260	+	RAMPAGE_only	3	5	10	0.380689	3.121928	chr4	2838108	2838543	LINE|L1|L1ME3B	-	chr4	2843856	2930076	ADD1|NM_176801.2	+	2843856,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763,2907742,2908514,2914883,2926013,2926641,2928170	2844024,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905108,2907844,2908604,2915040,2926112,2926675,2930076	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	27967349	27967352	27967351	+	High_confidence	30	46	46	1.751171	4.455749	chr2	27967169	27967529	LTR|ERVL-MaLR|THE1B	+	chr2	27967370	28338901	MSTRG.21291.18	+	27967370,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28338449	27967443,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28338901	0.978261
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr10	45000457	45000472	45000464	+	High_confidence	2	2	8	0.304552	2.807355	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.875000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	204870075	204870100	204870099	+	High_confidence	4	5	11	0.418758	3.095795	chr1	204870144	204870213	LINE|CR1|Plat_L3	+	chr1	204870830	205018371	NFASC|ENST00000404076.5	+	204870830,204920631,204944225,204952010,204954187,204954828,204957655,204968248,204968797,204970615,204973275,204974178,204974656,204975270,204976670,204978967,204979361,204980369,204981797,204984026,204985909,204987417,204988632,204991291,205009556,205012796,205016307	204871053,204920740,204944406,204952116,204954384,204954951,204957826,204968360,204968982,204970747,204973419,204974290,204974823,204975418,204976795,204979069,204979559,204980440,204982020,204984142,204986114,204987540,204988806,204991306,205009688,205012866,205018371	0.545455
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	112603280	112603395	112603280	-	RAMPAGE_only	12	14	100	3.806894	5.569823	chr3	112603244	112603521	SINE|Alu|AluSx1	+	chr3	112596793	112641269	CCDC80|ENST00000206423.7	-	112596793,112607175,112609977,112616709,112618967,112630112,112638027,112640326	112605763,112607256,112610081,112616858,112619104,112630269,112639916,112641269	0.990000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr13	111337431	111337466	111337465	+	RAMPAGE_only	14	19	58	2.207998	4.736197	chr13	111337198	111337649	LTR|ERVL-MaLR|MLT1F	-	chr13	111320667	111344247	TEX29|ENST00000283547.1	+	111320667,111320856,111328182,111339862,111342755,111344082	111320762,111320948,111328293,111339932,111342931,111344247	0.896552
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	101189483	101189515	101189514	-	RAMPAGE_only	9	13	23	0.875586	3.083765	chr15	101189487	101189574	DNA|hAT-Charlie|MER102a	-	chr15	101178576	101188025	CHSY1|ENST00000560766.1	-	101178576,101186678,101187992	101178980,101186794,101188025	0.869565
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	104287738	104287787	104287745	+	High_confidence	3	3	17	0.647172	3.375000	chr12	104287727	104287918	SINE|MIR|MIR	+	chr12	104287367	104348644	TXNRD1|ENST00000524698.5	+	104287367,104288930,104311289,104313244,104315776,104318912,104319469,104321090,104325336,104326346,104327514,104331533,104334236,104339138,104348352	104287431,104289040,104311412,104313317,104315896,104319055,104319585,104321316,104325429,104326423,104327671,104331641,104334332,104339273,104348644	0.941176
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	34588450	34588453	34588450	-	RAMPAGE_only	11	16	23	0.875586	4.055958	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34379067	34583651	MSTRG.12723.1	-	34379067,34381700,34381967,34382150,34382385,34382796,34383440,34383745,34383960,34385047,34385253,34385426,34385739,34386624,34389643,34391122,34391352,34398633,34399154,34400711,34404916,34406673,34407523,34437397,34583543	34381613,34381856,34382068,34382251,34382529,34383053,34383528,34383853,34384047,34385157,34385338,34385474,34385778,34387952,34389768,34391265,34391426,34398729,34399203,34400759,34405055,34406870,34407735,34437442,34583651	0.521739
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr8	105911829	105911838	105911837	-	RAMPAGE_only	5	5	10	0.380689	3.121928	chr8	105911686	105912062	LTR|ERVL-MaLR|THE1D	-	chr8	105784804	106060477	ZFPM2-AS1|ENST00000524045.6	-	105784804,105787066,105787448,105798324,106059080,106060380	105785217,105787221,105787596,105798442,106059136,106060477	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	14653390	14653391	14653390	-	High_confidence	145	145	146	5.558065	4.418318	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.993151
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	122074051	122074165	122074123	-	RAMPAGE_only	10	11	93	3.540411	5.536103	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065943	122076083	LOX|ENST00000505593.5	-	122065943,122070052,122070493,122074012,122075403,122076017	122066749,122070168,122070589,122074169,122075541,122076083	0.989247
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	643627	643636	643635	-	High_confidence	10	10	29	1.103999	3.619493	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	31494730	31494743	31494730	+	High_confidence	3	3	6	0.228414	2.584963	chr6	31494550	31494850	SINE|Alu|AluSp	+	chr6	31494880	31511124	MICB|NM_001289160.1	+	31494880,31505616,31506142,31507021,31507399,31509781	31494995,31505871,31506430,31507300,31507531,31511124	0.833333
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	92536601	92536602	92536601	-	High_confidence	31	37	37	1.408551	4.614859	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.756757
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	95793803	95793844	95793803	+	RAMPAGE_only	4	4	17	0.647172	3.807764	chr5	95793796	95793956	DNA|hAT-Tip100|MER45A	+	chr5	95731174	95796367	RHOBTB3|ENST00000379982.7	+	95731174,95731858,95736888,95748332,95752238,95755395,95763507,95768045,95780251,95783796,95788761,95793058	95731684,95732084,95737075,95748487,95752350,95755761,95763620,95768166,95780425,95783963,95788858,95796367	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr8	107336500	107336517	107336500	-	High_confidence	4	4	10	0.380689	2.646439	chr8	107336384	107336688	SINE|Alu|AluY	+	chr8	107249481	107336515	ANGPT1|NM_001314051.1	-	107249481,107264220,107284681,107293935,107303239,107321895,107336149,107336383	107252015,107264351,107284848,107294037,107303367,107322128,107336271,107336515	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr20	18794044	18794086	18794077	+	High_confidence	9	9	37	1.408551	3.715285	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	8788252	8788253	8788252	+	High_confidence	11	11	12	0.456827	2.663533	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.750000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	46266488	46266516	46266494	-	High_confidence	14	15	33	1.256275	4.176109	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.878788
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	172093420	172093445	172093420	-	RAMPAGE_only	2	3	7	0.266483	2.521641	chr5	172093338	172093392	DNA|hAT-Ac|OldhAT1	-	chr5	172057463	172063600	STK10|ENST00000523603.1	-	172057463,172061138,172063462	172057473,172061533,172063600	0.571429
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	171555736	171555836	171555736	+	RAMPAGE_only	6	6	48	1.827309	4.639279	chr2	171555665	171555905	SINE|MIR|MIR	-	chr2	171522476	171557646	CYBRD1|ENST00000375252.3	+	171522476,171553345,171554523	171522738,171553500,171557646	0.979167
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	158173024	158173025	158173024	-	High_confidence	48	49	66	2.512550	4.971536	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.954545
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	6673446	6673447	6673446	+	High_confidence	13	13	13	0.494896	3.334679	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr8	98473606	98473635	98473606	-	RAMPAGE_only	6	6	17	0.647172	3.572469	chr8	98473302	98474494	LINE|L2|L2c	+	chr8	98454630	98825671	STK3|ENST00000617590.1	-	98454630,98526741,98547968,98579663,98596031,98749275,98767242,98774738,98825514	98456000,98526917,98548161,98579789,98596169,98749390,98767371,98774819,98825671	0.882353
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	111392850	111392900	111392899	-	RAMPAGE_only	7	7	23	0.875586	3.638148	chr7	111392522	111393282	LTR|ERVL|MER21C	-	chr7	110663300	111390750	IMMP2L|ENST00000489381.1	-	110663300,110664823,110963499,111390570	110663721,110665012,110963565,111390750	0.608696
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr14	61463077	61463103	61463102	+	High_confidence	3	3	8	0.304552	2.521641	chr14	61463043	61463245	SINE|MIR|MIRb	+	chr14	61463068	61550904	MSTRG.11661.20	+	61463068,61485501,61529074,61530406,61547742,61549684	61463360,61485656,61529213,61530595,61547886,61550904	0.750000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr16	28538637	28538691	28538686	-	High_confidence	16	22	88	3.350067	5.044979	chr16	28538407	28538698	SINE|Alu|AluJo	+	chr16	28534309	28538951	MSTRG.14814.2	-	28534309,28536958,28538005,28538795	28536105,28537669,28538155,28538951	0.988636
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	111413967	111414006	111413972	-	RAMPAGE_only	28	41	223	8.489373	6.005230	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	110663300	111390750	IMMP2L|ENST00000489381.1	-	110663300,110664823,110963499,111390570	110663721,110665012,110963565,111390750	0.609865
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr19	55280188	55280227	55280226	-	High_confidence	5	5	13	0.494896	3.392747	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	227142961	227142980	227142961	-	RAMPAGE_only	6	7	14	0.532965	2.985228	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317714	CDC42BPA|ENST00000334218.9	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227059372,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227112670,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227059411,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227112913,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317714	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr8	53523885	53523931	53523890	-	High_confidence	11	11	27	1.027861	4.310443	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.777778
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	227888532	227888552	227888543	+	RAMPAGE_only	9	9	40	1.522758	4.215312	chr2	227888311	227888642	LTR|ERVL|ERV3-16A3_LTR	-	chr2	227871610	227924310	DAW1|NM_178821.1	+	227871610,227885350,227889855,227891254,227893794,227898181,227903001,227904928,227906235,227907137,227918779,227921398,227923933	227871729,227885423,227890000,227891313,227893917,227898281,227903109,227905035,227906338,227907252,227918856,227921561,227924310	0.725000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr10	30999519	30999533	30999519	-	High_confidence	3	4	8	0.304552	2.521641	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.625000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	50382365	50382403	50382365	-	RAMPAGE_only	2	2	9	0.342620	2.947703	chr17	50382317	50382466	SINE|MIR|MIR3	+	chr17	50381232	50397553	LRRC59|NM_018509.3	-	50381232,50385117,50388059,50392397,50392738,50394928,50397212	50383235,50385291,50388132,50392502,50392897,50394988,50397553	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	31376356	31376357	31376356	-	High_confidence	19	20	20	0.761379	2.607861	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.850000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	127543805	127543808	127543805	-	RAMPAGE_only	4	4	9	0.342620	2.725481	chr9	127543678	127543822	LINE|L2|L2c	+	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	321229	321258	321257	-	High_confidence	2	2	8	0.304552	2.807355	chr11	321227	321340	SINE|Alu|AluY	+	chr11	319668	321050	IFITM3|ENST00000399808.4	-	319668,320564	319990,321050	0.875000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	112600539	112600792	112600655	-	RAMPAGE_only	28	28	150	5.710341	5.712385	chr3	112600510	112600806	SINE|Alu|AluJb	-	chr3	112596793	112601969	LINC01279|NR_109779.1	-	112596793	112601969	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	55267619	55267622	55267621	-	High_confidence	5	8	9	0.342620	2.500000	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55236620	55267604	MSTRG.21698.4	-	55236620,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267604	0.888889
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr16	70590319	70590329	70590319	+	RAMPAGE_only	3	3	11	0.418758	2.732159	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579894	70660682	IL34|NM_152456.2	+	70579894,70646547,70654537,70656601,70656959,70659617,70659996	70580049,70646975,70654671,70656679,70657121,70659753,70660682	0.909091
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	95042514	95042539	95042538	-	RAMPAGE_only	15	18	32	1.218206	4.349200	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.843750
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	147173219	147173250	147173225	+	High_confidence	12	16	48	1.827309	5.152569	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.833333
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	4143199	4143218	4143199	+	High_confidence	264	293	639	24.326051	6.013031	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.985915
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	123211355	123211356	123211355	+	RAMPAGE_only	32	40	46	1.751171	4.618012	chr7	123211158	123211525	LTR|ERVL-MaLR|THE1D	+	chr7	123456628	123459856	AC073323.1|ENST00000419832.1	+	123456628,123457398,123459692	123456765,123457548,123459856	0.739130
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	9775633	9775666	9775665	+	High_confidence	125	168	707	26.914739	6.988843	chr11	9775466	9776058	LTR|ERVL|MER21C	+	chr11	9775730	9808379	SBF2-AS1|ENST00000534671.1	+	9775730,9780375,9807847	9775765,9780575,9808379	0.857143
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	17282793	17282831	17282830	+	RAMPAGE_only	5	5	13	0.494896	3.546594	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	121314013	121314021	121314020	+	RAMPAGE_only	5	5	10	0.380689	2.725481	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.900000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	22477294	22477308	22477294	-	High_confidence	6	6	12	0.456827	3.027169	chr12	22477054	22477335	DNA|hAT-Charlie|MER33	-	chr12	22470896	22477338	C2CD5|ENST00000537643.1	-	22470896,22471398,22471966,22472285,22472743,22474750,22477261	22470911,22471488,22472065,22472347,22472807,22474891,22477338	0.583333
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	9391827	9391828	9391827	-	High_confidence	7	7	7	0.266483	2.807355	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9389914	9391822	THUMPD3-AS1|ENST00000522221.1	-	9389914,9391426	9390497,9391822	0.571429
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	154975497	154975546	154975545	+	High_confidence	9	9	34	1.294344	3.763358	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975538	154978916	CKS1B|ENST00000473344.1	+	154975538,154977986,154978724	154975608,154978114,154978916	0.764706
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	78620766	78620773	78620772	+	High_confidence	7	7	12	0.456827	2.732159	chr1	78620580	78620966	LINE|L1|L1MA4	-	chr1	78620468	78641550	IFI44L|ENST00000476876.5	+	78620468,78628950,78629719,78635336,78637031,78641020,78641434	78620571,78628999,78629915,78635489,78637203,78641121,78641550	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	45645883	45645925	45645895	+	High_confidence	11	14	42	1.598895	4.419391	chr15	45645871	45646155	DNA|hAT-Tip100|Arthur1C	+	chr15	45645880	45669946	SQOR|ENST00000561493.5	+	45645880,45658906,45661954,45669927	45646008,45659157,45662125,45669946	0.690476
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	12927693	12927741	12927733	+	High_confidence	18	18	51	1.941516	4.997064	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.784314
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	11604404	11604456	11604455	-	High_confidence	10	10	42	1.598895	4.637801	chr3	11604225	11604413	SINE|MIR|MIR3	-	chr3	11556066	11604581	VGLL4|NM_001284391.1	-	11556066,11559331,11564796,11601832,11604323	11558827,11559455,11565019,11602022,11604581	0.952381
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr8	102207299	102207333	102207299	-	RAMPAGE_only	3	3	16	0.609103	3.506891	chr8	102207046	102207317	DNA|hAT-Charlie|MER103C	+	chr8	102205624	102238775	RRM2B|ENST00000621845.1	-	102205624,102206387,102207325,102212775,102214053,102218813,102224045,102224884,102225917,102232148,102238558	102206277,102207185,102208285,102212889,102214158,102218947,102224140,102225018,102226034,102232304,102238775	0.937500
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	110440319	110440365	110440319	-	RAMPAGE_only	13	13	45	1.713102	4.689704	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.933333
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr13	24580612	24580623	24580612	+	High_confidence	7	9	16	0.609103	3.327820	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	8663176	8663193	8663176	-	High_confidence	13	15	24	0.913655	3.720176	chr12	8663102	8663238	SINE|Alu|AluSq2	-	chr12	8645942	8662888	MFAP5|NM_003480.3	-	8645942,8649500,8650501,8651661,8654436,8655414,8655785,8660862,8662046,8662626	8648203,8649574,8650589,8651691,8654481,8655447,8655830,8660898,8662106,8662888	0.791667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	50924078	50924079	50924078	+	High_confidence	5	8	8	0.304552	2.750000	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr18	48621506	48621531	48621506	+	RAMPAGE_only	3	3	13	0.494896	2.873141	chr18	48621468	48621857	LINE|L2|L2a	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr18	62017720	62017721	62017720	-	RAMPAGE_only	9	10	14	0.532965	3.026987	chr18	62017469	62017995	LTR|ERVL-MaLR|MLT1J	-	chr18	61816121	61894231	RNF152|ENST00000591306.5	-	61816121,61892794,61894149	61816598,61892917,61894231	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr19	44914383	44914410	44914383	+	High_confidence	3	3	15	0.571034	2.521641	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.933333
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	35432451	35432453	35432451	-	High_confidence	6	14	14	0.532965	3.324863	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	86944474	86944524	86944522	-	RAMPAGE_only	11	14	42	1.598895	4.478876	chr3	86944240	86944550	SINE|Alu|AluJo	-	chr3	86937968	86991107	VGLL3|ENST00000398399.6	-	86937968,86968589,86978525,86990617	86947067,86969123,86978802,86991107	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	2975656	2975667	2975656	+	RAMPAGE_only	3	3	12	0.456827	2.855389	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.916667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	9986887	9986916	9986887	+	High_confidence	8	8	33	1.256275	4.351410	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.757576
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr21	28090131	28090132	28090131	+	High_confidence	4	6	6	0.228414	2.584963	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28089888	28102790	LINC01697|ENST00000423808.2	+	28089888,28102549	28090521,28102790	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	188790028	188790121	188790048	-	High_confidence	35	42	157	5.976823	5.361742	chr2	188789955	188790492	LTR|Gypsy?|LTR85a	+	chr2	188733737	188790104	DIRC1|NM_052952.2	-	188733737,188789862	188734949,188790104	0.872611
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	29280826	29280866	29280853	-	High_confidence	7	7	35	1.332413	4.337175	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.571429
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	45192702	45192708	45192707	-	RAMPAGE_only	8	9	16	0.609103	3.375000	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	0.812500
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	143852526	143852591	143852590	-	RAMPAGE_only	5	5	26	0.989792	3.823935	chr7	143852406	143853075	LINE|L1|L1M6B	-	chr7	143851367	143885373	TCAF1|NM_001206941.1	-	143851367,143857099,143858823,143860207,143861094,143862415,143862801,143885209	143854142,143857350,143859161,143860447,143861308,143862513,143863796,143885373	0.923077
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	111097312	111097352	111097337	-	High_confidence	13	13	85	3.235860	4.971386	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.941176
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	997305	997332	997305	-	High_confidence	6	6	23	0.875586	4.001823	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.869565
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	150118757	150118768	150118766	-	RAMPAGE_only	3	8	14	0.532965	3.026987	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.928571
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	147382883	147382900	147382899	+	High_confidence	10	10	24	0.913655	3.516028	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.541667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	246417412	246417423	246417412	-	High_confidence	24	24	39	1.484689	4.580023	chr1	246417275	246418033	LTR|ERV1|LTR8B	-	chr1	245749339	246417412	SMYD3|NM_022743.2	-	245749339,245764040,245858495,245863798,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246417295	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246417412	0.923077
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	59892716	59892746	59892716	-	High_confidence	14	16	43	1.636964	4.326632	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.930233
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	26957047	26957077	26957076	+	High_confidence	4	4	13	0.494896	3.084963	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26956992	27023924	LINC00240|ENST00000606878.1	+	26956992,26968457,27023253	26957183,26968522,27023924	0.923077
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	137268347	137268354	137268347	-	High_confidence	6	6	11	0.418758	3.027169	chr7	137267941	137268351	LTR|ERV1|HERVE_a-int	-	chr7	137227347	137268423	MSTRG.37242.2	-	137227347,137251229,137253463,137254858,137268323	137228072,137251391,137253637,137254974,137268423	0.818182
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	201116007	201116029	201116007	+	High_confidence	2	3	10	0.380689	2.721928	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	129488849	129488905	129488856	+	High_confidence	52	52	184	7.004685	4.908842	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.961957
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr18	46087042	46087066	46087042	-	RAMPAGE_only	4	4	12	0.456827	2.913977	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084149	46088696	ATP5F1A|ENST00000586523.1	-	46084149	46088696	0.916667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	4583843	4583863	4583862	-	High_confidence	4	4	14	0.532965	3.521641	chr6	4583626	4584101	LTR|ERVL-MaLR|MLT1E2	-	chr6	4304941	4583871	AL162718.1|ENST00000642310.1	-	4304941,4428382,4431395,4581638,4583723	4307968,4428951,4431475,4581803,4583871	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr13	113187420	113187472	113187471	-	High_confidence	8	8	33	1.256275	4.199699	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.909091
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	151166642	151166686	151166685	+	High_confidence	13	13	51	1.941516	4.946243	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	0.960784
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr19	46413405	46413612	46413611	-	High_confidence	73	75	530	20.176537	6.389853	chr19	46413579	46413731	LTR|Gypsy|LTR104_Mam	-	chr19	46410378	46413564	CCDC8|ENST00000307522.4	-	46410378	46413564	0.994340
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr20	50172544	50172567	50172566	+	High_confidence	3	3	6	0.228414	2.584963	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	62897380	62897431	62897430	+	High_confidence	6	6	21	0.799448	3.721928	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.714286
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	111606231	111606277	111606276	-	High_confidence	5	5	18	0.685241	3.836592	chr6	111606274	111606582	SINE|Alu|AluY	+	chr6	111555377	111606274	TRAF3IP2|NM_147686.3	-	111555377,111562964,111566443,111567623,111572894,111575642,111580196,111591257,111605775	111559551,111563039,111566560,111567692,111572983,111575821,111580389,111592094,111606274	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	30756283	30756317	30756300	+	RAMPAGE_only	3	3	13	0.494896	3.084963	chr7	30756237	30756402	SINE|Alu|AluYh3	-	chr7	30752134	30757602	INMT|NM_001199219.1	+	30752134,30753733,30755421	30752304,30753938,30757602	0.923077
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr22	30971759	30971767	30971762	+	High_confidence	3	3	9	0.342620	2.503258	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr18	8701808	8701854	8701853	+	RAMPAGE_only	3	3	12	0.456827	2.751629	chr18	8701808	8702158	LTR|ERVL|LTR33A	-	chr18	8705517	8832774	MSTRG.18148.1	+	8705517,8718423,8720337,8777832,8783529,8785935,8796231,8798096,8806892,8812978,8819046,8821466,8824698,8831606	8706713,8718648,8720496,8777892,8784843,8786091,8796462,8798291,8807060,8813233,8819259,8821498,8826232,8832774	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	104280712	104280837	104280736	-	High_confidence	23	24	108	4.111445	5.738697	chr12	104280524	104280952	LTR|ERVL|MLT2D	+	chr12	104262313	104280722	AC089983.1|ENST00000549807.1	-	104262313,104280283	104262575,104280722	0.916667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	134485367	134485388	134485387	-	High_confidence	4	5	10	0.380689	2.641604	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.900000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	50226725	50226728	50226725	+	High_confidence	8	8	19	0.723310	3.725481	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	0.947368
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	150125445	150125485	150125473	-	RAMPAGE_only	6	6	25	0.951723	4.001629	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.920000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	11225905	11225928	11225927	-	High_confidence	4	4	11	0.418758	3.121928	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.727273
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr8	2726948	2726963	2726956	+	High_confidence	4	8	19	0.723310	3.826875	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.736842
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	123211290	123211317	123211290	+	RAMPAGE_only	7	7	14	0.532965	2.873141	chr7	123211158	123211525	LTR|ERVL-MaLR|THE1D	+	chr7	123456628	123459856	AC073323.1|ENST00000419832.1	+	123456628,123457398,123459692	123456765,123457548,123459856	0.928571
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	57961647	57961653	57961647	+	High_confidence	8	8	23	0.875586	3.820889	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961437	57973690	AL445250.1|ENST00000641671.1	+	57961437,57962180,57965516,57971594,57972093	57961742,57962248,57965743,57971656,57973690	0.608696
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	40815628	40815655	40815634	+	RAMPAGE_only	7	7	32	1.218206	4.168244	chr7	40810256	40816712	LINE|L1|L1PA16	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.937500
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	56148946	56148962	56148946	-	RAMPAGE_only	2	2	8	0.304552	2.521641	chr6	56148804	56149048	LINE|CR1|L3	-	chr6	56056589	56125608	COL21A1|ENST00000488912.5	-	56056589,56059164,56060017,56060740,56060890,56061648,56064577,56067294,56069045,56070744,56074231,56075478,56077528,56078092,56101471,56124061,56124238,56125566	56057844,56059242,56060116,56060795,56061037,56061681,56064622,56067330,56069117,56070798,56074285,56075532,56077573,56078188,56101525,56124115,56124292,56125608	0.750000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr20	3795746	3795789	3795788	+	High_confidence	16	18	102	3.883032	5.445880	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.960784
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	57568212	57568213	57568212	-	High_confidence	8	8	12	0.456827	3.459432	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	0.916667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	310109	310113	310110	+	High_confidence	6	11	18	0.685241	2.933955	chr11	309444	310164	LTR|ERV1|LTR30	-	chr11	310004	315272	MSTRG.5806.7	+	310004,313996,314921	310171,314356,315272	0.944444
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	90467501	90467527	90467501	+	RAMPAGE_only	2	3	11	0.418758	2.921928	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90388260	90500371	IQGAP1|ENST00000560738.1	+	90388260,90390773,90466046,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390824,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500371	0.909091
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	10363706	10363707	10363706	+	High_confidence	4	5	6	0.228414	2.584963	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr18	46087099	46087136	46087118	-	RAMPAGE_only	3	3	15	0.571034	3.240224	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084149	46088696	ATP5F1A|ENST00000586523.1	-	46084149	46088696	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	10363964	10363974	10363964	+	High_confidence	6	6	10	0.380689	2.503258	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.800000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	111392945	111392959	111392958	-	RAMPAGE_only	8	8	15	0.571034	3.378783	chr7	111392522	111393282	LTR|ERVL|MER21C	-	chr7	110663300	111390750	IMMP2L|ENST00000489381.1	-	110663300,110664823,110963499,111390570	110663721,110665012,110963565,111390750	0.800000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	32613831	32613833	32613832	+	High_confidence	5	8	10	0.380689	2.646439	chr15	32613860	32614055	LINE|CR1|L3	+	chr15	32613732	32615111	AC123768.2|ENST00000500941.2	+	32613732,32614108,32614739	32613998,32614202,32615111	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	168669809	168669936	168669809	-	RAMPAGE_only	7	7	55	2.093792	4.612460	chr5	168669607	168669760	SINE|MIR|MIRc	-	chr5	168661732	168883338	SLIT3|ENST00000404867.7	-	168661732,168669782,168671197,168673176,168683965,168685686,168686978,168692606,168696291,168700581,168707975,168710894,168712282,168722255,168722932,168724415,168748301,168749471,168752954,168753863,168760861,168762538,168772780,168774234,168785906,168789559,168795506,168806445,168817299,168823259,168844583,168883264	168666689,168669991,168671483,168673331,168684096,168685927,168687116,168692700,168696431,168700679,168708121,168711058,168712354,168722327,168723004,168724484,168748434,168749635,168753098,168754007,168760936,168762689,168772944,168774378,168785978,168789631,168795578,168806587,168817463,168823331,168844655,168883338	0.963636
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	93773408	93773412	93773411	+	RAMPAGE_only	15	18	36	1.370482	3.736324	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.972222
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr19	44626542	44626558	44626556	+	RAMPAGE_only	3	5	9	0.342620	2.500000	chr19	44626362	44626615	LINE|L2|L2b	-	chr19	44613629	44636781	IGSF23|ENST00000402988.5	+	44613629,44623706,44627419,44635400,44636418	44613770,44623972,44627573,44635465,44636781	0.888889
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	78620815	78620839	78620838	+	High_confidence	4	4	9	0.342620	2.725481	chr1	78620580	78620966	LINE|L1|L1MA4	-	chr1	78620468	78641550	IFI44L|ENST00000476876.5	+	78620468,78628950,78629719,78635336,78637031,78641020,78641434	78620571,78628999,78629915,78635489,78637203,78641121,78641550	0.555556
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	1421686	1421820	1421686	-	RAMPAGE_only	5	6	58	2.207998	3.911259	chr17	1421673	1421739	LINE|L2|L2b	-	chr17	1420688	1456223	CRK|ENST00000398970.5	-	1420688,1436789,1455876	1423650,1437155,1456223	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	68512826	68512828	68512826	+	RAMPAGE_only	4	6	9	0.342620	2.500000	chr15	68512567	68513033	LTR|ERVL-MaLR|MLT1D	+	chr15	68518372	68727806	CORO2B|NM_001324014.1	+	68518372,68535594,68645159,68695139,68710731,68711541,68713924,68714558,68715214,68718697,68719143,68719412,68725842	68518593,68535659,68645360,68695256,68710881,68711706,68714041,68714663,68715311,68718810,68719234,68719552,68727806	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	128570452	128570488	128570487	-	High_confidence	20	20	61	2.322205	5.042319	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.950820
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	76345574	76345605	76345604	-	RAMPAGE_only	13	14	33	1.256275	4.304229	chr17	76345479	76345626	SINE|Alu|AluJb	+	chr17	76309485	76354149	PRPSAP1|ENST00000446526.7	-	76309485,76312869,76313820,76328716,76330042,76330550,76332262,76344670,76348528,76353533	76311700,76313016,76313891,76328862,76330098,76330666,76332435,76344737,76348581,76354149	0.696970
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	2990742	2990750	2990748	-	RAMPAGE_only	9	15	33	1.256275	3.845663	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.818182
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	16981087	16981147	16981087	-	High_confidence	15	18	89	3.388135	4.307555	chr1	16980989	16981106	LINE|L2|L2b	+	chr1	16974501	16980835	MFAP2|ENST00000375535.3	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16980586	16975023,16975342,16975730,16976545,16976794,16976923,16977198,16978314,16980835	0.977528
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr13	42819855	42819856	42819855	-	RAMPAGE_only	12	12	18	0.685241	3.616875	chr13	42819653	42820002	LTR|ERVL-MaLR|THE1B	-	chr13	42814015	42814234	MSTRG.10460.1	-	42814015	42814234	0.555556
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	6590246	6590290	6590257	+	High_confidence	7	7	52	1.979585	4.693905	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.923077
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr16	30429244	30429271	30429260	-	High_confidence	3	3	10	0.380689	2.725481	chr16	30429210	30429354	SINE|MIR|MIR3	+	chr16	30423913	30429289	DCTPP1|ENST00000568434.1	-	30423913,30429056	30424533,30429289	0.900000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr10	35449689	35449726	35449689	+	RAMPAGE_only	7	7	20	0.761379	3.621928	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.900000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	246417365	246417385	246417365	-	High_confidence	3	3	8	0.304552	2.521641	chr1	246417275	246418033	LTR|ERV1|LTR8B	-	chr1	245749341	246417409	SMYD3|ENST00000630181.2	-	245749341,245764040,245858495,245863798,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246417295	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246417409	0.875000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	123060123	123060256	123060174	-	High_confidence	21	23	226	8.603580	5.407911	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.659292
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr19	48868595	48868617	48868613	-	High_confidence	992	1133	4089	155.663887	7.632057	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837182	48868603	MSTRG.20501.4	-	48837182,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868603	0.981903
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr14	81170415	81170431	81170415	-	High_confidence	4	5	8	0.304552	2.750000	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.625000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	128428038	128428041	128428038	+	High_confidence	4	4	11	0.418758	3.277613	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.545455
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr16	4355592	4355593	4355592	-	High_confidence	295	296	296	11.268406	4.872095	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.972973
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr13	109272202	109272205	109272202	+	RAMPAGE_only	72	77	112	4.263721	5.168811	chr13	109271794	109272374	LTR|ERV1|LTR9	+	chr13	109269633	109273838	AL161431.1|ENST00000618966.1	+	109269633	109273838	0.642857
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	32157414	32157435	32157434	+	High_confidence	3	3	10	0.380689	2.521928	chr1	32157475	32157894	LINE|L2|L2a	+	chr1	32156861	32167296	KPNA6|ENST00000446515.1	+	32156861,32157345,32158266,32160614,32161946,32162360,32163234,32166104,32167168	32156945,32157445,32158361,32160703,32162046,32162524,32163313,32166230,32167296	0.900000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	219092281	219092294	219092281	-	RAMPAGE_only	3	3	8	0.304552	2.750000	chr1	219088450	219094763	LINE|L1|L1MA4	+	chr1	219080972	219173788	LYPLAL1-AS1|NR_038845.1	-	219080972,219086494,219149938,219156119,219173469	219081943,219086660,219150031,219156199,219173788	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	162781256	162781287	162781256	+	RAMPAGE_only	6	6	14	0.532965	3.026987	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162767236	162786600	MSTRG.2888.6	+	162767236,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162767359,162770566,162772247,162773596,162775843,162776370,162778729,162786600	0.928571
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr19	12800915	12801011	12800953	-	High_confidence	7	8	37	1.408551	3.558824	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr22	42644615	42644634	42644615	-	High_confidence	9	9	20	0.761379	3.484184	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	39810033	39810116	39810061	-	High_confidence	12	12	101	3.844963	4.811438	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.960396
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	58578102	58578131	58578102	-	High_confidence	23	24	73	2.779032	5.158534	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.657534
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	110874385	110874413	110874412	-	RAMPAGE_only	3	4	12	0.456827	2.913977	chr9	110874126	110874431	LINE|L1|L1ME4a	+	chr9	110873777	110999466	LPAR1|ENST00000374430.6	-	110873777,110941420,110972072,110973480,110999392	110875722,110942168,110972220,110973558,110999466	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr19	20423688	20423704	20423697	-	RAMPAGE_only	19	24	58	2.207998	4.456150	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.844828
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	128570542	128570586	128570542	-	High_confidence	5	7	19	0.723310	3.471354	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	113537392	113537427	113537410	-	RAMPAGE_only	3	3	14	0.532965	3.085055	chr4	113537398	113537465	DNA|hAT-Ac|OldhAT1	-	chr4	113460146	113517643	CAMK2D|ENST00000509594.1	-	113460146,113465528,113500462,113509637,113513327,113513829,113515068,113517562	113460241,113465604,113500508,113509672,113513370,113513913,113515191,113517643	0.928571
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	172954206	172954233	172954206	+	High_confidence	7	7	23	0.875586	3.261044	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172954055	172969716	MSTRG.32935.1	+	172954055,172959864,172968458,172969412	172954336,172960041,172968599,172969716	0.956522
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	70278336	70278368	70278336	+	RAMPAGE_only	2	2	9	0.342620	2.947703	chr2	70278211	70278340	DNA|hAT-Charlie|MER5B	-	chr2	70258148	70279103	PCYOX1|ENST00000264441.9	+	70258148,70259359,70261211,70274958,70275513,70277019	70258276,70259566,70261386,70275170,70275666,70279103	0.888889
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	129698737	129698744	129698737	+	RAMPAGE_only	10	19	29	1.103999	3.509036	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	180870516	180870521	180870518	-	High_confidence	11	14	28	1.065930	3.851823	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180707588	180870178	LOC101928882|NR_109986.1	-	180707588,180711192,180711309,180725514,180733478,180734486,180737492,180747879,180748245,180751347,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180733682,180734606,180737814,180748043,180748319,180751410,180782124,180810470,180847624,180870178	0.857143
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	28347653	28347695	28347653	-	High_confidence	31	31	86	3.273929	5.791399	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.674419
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	166850123	166850149	166850124	+	RAMPAGE_only	5	8	14	0.532965	3.085055	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.928571
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr10	31808648	31808673	31808648	-	High_confidence	2	2	7	0.266483	2.807355	chr10	31808386	31808622	SINE|MIR|MIRb	-	chr10	31806290	31808551	ARHGAP12|ENST00000497085.1	-	31806290,31808452	31807832,31808551	0.571429
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	141333512	141333582	141333575	+	RAMPAGE_only	9	13	48	1.827309	4.021241	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141580387	141732837	MSTRG.30508.1	+	141580387,141656185,141719365,141720468,141721923,141727939,141729846,141732737	141580563,141656307,141719476,141720566,141722008,141727984,141729984,141732837	0.645833
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	52534922	52534943	52534922	-	High_confidence	3	3	9	0.342620	2.503258	chr3	52534822	52534878	LINE|L2|L2b	-	chr3	52524469	52535006	NT5DC2|ENST00000492555.5	-	52524469,52524816,52524962,52525208,52527293,52527616,52527828,52528012,52528182,52528636,52528860,52529149,52534350	52524731,52524881,52525103,52525295,52527375,52527718,52527931,52528073,52528311,52528692,52528935,52529334,52535006	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr20	37297344	37297345	37297344	+	High_confidence	20	21	21	0.799448	3.384184	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.904762
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	68512745	68512755	68512754	+	RAMPAGE_only	9	12	18	0.685241	3.683542	chr15	68512567	68513033	LTR|ERVL-MaLR|MLT1D	+	chr15	68518372	68727806	CORO2B|NM_001324014.1	+	68518372,68535594,68645159,68695139,68710731,68711541,68713924,68714558,68715214,68718697,68719143,68719412,68725842	68518593,68535659,68645360,68695256,68710881,68711706,68714041,68714663,68715311,68718810,68719234,68719552,68727806	0.722222
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	310044	310058	310044	+	High_confidence	4	4	9	0.342620	2.500000	chr11	309444	310164	LTR|ERV1|LTR30	-	chr11	310004	315272	MSTRG.5806.7	+	310004,313996,314921	310171,314356,315272	0.888889
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	35432475	35432500	35432499	-	High_confidence	6	6	11	0.418758	3.321928	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.909091
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	141332616	141332617	141332616	-	High_confidence	24	25	25	0.951723	3.036577	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.960000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	74174548	74174572	74174571	+	High_confidence	60	64	244	9.288821	5.295870	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	0.971311
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	46280202	46280255	46280215	-	RAMPAGE_only	6	6	31	1.180137	2.619668	chr1	46280045	46280180	SINE|MIR|MIRb	-	chr1	46278400	46286112	LRRC41|ENST00000617760.4	-	46278400,46278906,46279181,46279491,46280191,46280395,46281124,46285361	46278905,46279084,46279257,46279614,46280290,46280560,46281385,46286112	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr10	84560417	84560418	84560417	+	High_confidence	6	7	7	0.266483	2.521641	chr10	84560374	84560417	LINE|L1|L1MEg	-	chr10	84560442	84561263	RPS3AP5|ENST00000389400.4	+	84560442	84561263	0.857143
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	127451200	127451201	127451200	-	High_confidence	7	8	11	0.418758	3.095795	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	191167890	191167892	191167891	-	RAMPAGE_only	4	6	9	0.342620	2.947703	chr2	191167857	191168044	LINE|CR1|L3	+	chr2	191029575	191151596	STAT4|NM_001243835.1	-	191029575,191030971,191031449,191032957,191033489,191033910,191034547,191036163,191039198,191041064,191054489,191058017,191058201,191058709,191061728,191062761,191064806,191066429,191069692,191073097,191076226,191146612,191148075,191151333	191029866,191031080,191031516,191033149,191033626,191034005,191034597,191036299,191039297,191041148,191054534,191058111,191058219,191058769,191061821,191062920,191064958,191066515,191069771,191073190,191076325,191146757,191148204,191151596	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr8	57746128	57746129	57746128	+	High_confidence	13	13	13	0.494896	3.700440	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	19386313	19386334	19386333	-	High_confidence	16	20	49	1.865378	4.361974	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.979592
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr13	30429288	30429289	30429288	-	RAMPAGE_only	6	9	9	0.342620	2.500000	chr13	30428989	30429302	SINE|Alu|AluSq2	+	chr13	30202629	30307487	KATNAL1|NM_032116.4	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30307330	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307487	0.888889
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	176241725	176241726	176241725	+	RAMPAGE_only	19	19	28	1.065930	4.356558	chr1	176241083	176241796	DNA|TcMar-Tigger|MER44D	-	chr1	176463170	176691204	PAPPA2|ENST00000367661.7	+	176463170,176555406,176594523,176670969,176690136	176463418,176557241,176595595,176671115,176691204	0.607143
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr18	7946875	7946898	7946878	+	High_confidence	64	64	236	8.984269	5.926870	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946883	8296455	MSTRG.18139.6	+	7946883,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8143646,8244057,8247844,8248149,8296367	7946977,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8143779,8244209,8247919,8248176,8296455	0.987288
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr20	45833293	45833323	45833293	-	High_confidence	15	17	68	2.588688	4.408949	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	72111493	72111497	72111493	-	High_confidence	4	5	8	0.304552	2.521641	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72108817	72111497	ANAPC15|ENST00000538117.5	-	72108817,72109228,72110087,72110543,72111156,72111411	72108875,72109341,72110225,72110603,72111281,72111497	0.500000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	77532104	77532107	77532106	+	High_confidence	112	133	178	6.776271	5.478067	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.960674
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr10	30974835	30974869	30974835	-	RAMPAGE_only	4	4	18	0.685241	3.734522	chr10	30974767	30974948	SINE|MIR|MIR3	-	chr10	30844633	30984426	ZNF438|ENST00000361310.7	-	30844633,30848530,30876997,30908932,30910359,30941574,30984368	30845573,30850367,30877065,30909015,30910440,30941651,30984426	0.833333
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr8	102275530	102275563	102275530	-	RAMPAGE_only	3	3	28	1.065930	3.838804	chr8	102275368	102275493	LINE|L1|L1ME3E	-	chr8	102271193	102276820	UBR5|ENST00000521566.1	-	102271193,102272528,102275520,102275707,102276773	102271245,102272772,102275619,102275828,102276820	0.821429
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	6582139	6582178	6582139	-	High_confidence	5	5	19	0.723310	3.947703	chr12	6581880	6582102	SINE|Alu|AluSx1	-	chr12	6570190	6581343	CHD4|ENST00000644652.1	-	6570190,6570868,6573073,6577784,6578028,6578408,6578845,6580581,6581043,6581290	6570693,6571032,6573269,6577917,6578137,6578546,6578917,6580699,6581173,6581343	0.947368
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	29114158	29114171	29114158	+	High_confidence	5	5	17	0.647172	3.337175	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	173369528	173369534	173369528	-	High_confidence	2	3	6	0.228414	2.584963	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363779	173370446	AC097534.2|ENST00000609153.1	-	173363779,173369433,173370291	173364198,173369610,173370446	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr4	123399294	123399301	123399294	+	High_confidence	7	7	13	0.494896	2.918296	chr4	123399094	123399386	SINE|Alu|AluSx	+	chr4	123399489	123403760	SPRY1|NM_005841.2	+	123399489,123401536	123399794,123403760	0.923077
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	238486003	238486036	238486008	-	High_confidence	10	10	70	2.664826	5.114232	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480383	238486017	LINC01139|NR_015407.1	-	238480383,238485784	238481681,238486017	0.700000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	128082243	128082276	128082243	-	High_confidence	5	5	19	0.723310	3.794653	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127965887	128082974	LINC01184|ENST00000501652.5	-	127965887,128061143,128081972,128082734	127966928,128061244,128082191,128082974	0.578947
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	157487448	157487449	157487448	-	RAMPAGE_only	77	95	105	3.997238	4.860274	chr3	157486755	157488128	LINE|L1|L1ME3C	+	chr3	157460094	157489356	VEPH1|ENST00000482434.1	-	157460094,157470313,157489054	157460355,157470529,157489356	0.876190
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr11	943152	943178	943159	+	High_confidence	7	7	25	0.951723	3.973661	chr11	943120	943579	LTR|ERV1|LTR2	-	chr11	943099	972191	AP2A2|ENST00000530801.5	+	943099,959436,970168,972061	943314,959505,970311,972191	0.720000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr10	55291867	55291868	55291867	-	RAMPAGE_only	15	21	22	0.837517	3.594466	chr10	55291696	55292048	LTR|ERVL-MaLR|THE1B	-	chr10	54864673	54869122	AC051618.1|ENST00000414295.1	-	54864673,54869038	54864796,54869122	0.727273
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	20658312	20658349	20658338	+	High_confidence	10	11	56	2.131861	4.299138	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658320	20995948	MSTRG.39549.3	+	20658320,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	0.642857
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	147173173	147173183	147173173	+	High_confidence	8	8	16	0.609103	3.500000	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.875000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	236551395	236551414	236551395	+	RAMPAGE_only	2	2	7	0.266483	2.521641	chr1	236551424	236551571	SINE|MIR|MIRb	+	chr1	236523726	236552981	LGALS8|NM_201544.2	+	236523726,236525967,236537496,236538878,236540563,236541653,236542760,236543559,236544749,236548011	236524061,236526115,236537585,236539089,236540683,236541710,236542787,236543648,236544915,236552981	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	6493747	6493748	6493747	-	High_confidence	7	7	10	0.380689	3.169925	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6492151	6493718	MRPL51|ENST00000543959.5	-	6492151,6492861,6493673	6492467,6492972,6493718	0.800000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr8	143039246	143039267	143039246	+	High_confidence	6	10	31	1.180137	4.030395	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.903226
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	9987139	9987163	9987162	+	High_confidence	23	23	60	2.284136	4.468879	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9987214	10003097	EMC3-AS1|ENST00000440568.1	+	9987214,9987814,9988711,10002716	9987264,9987905,9988747,10003097	0.600000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	174118081	174118085	174118084	-	High_confidence	25	27	40	1.522758	3.740154	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075189	174118051	MSTRG.23089.4	-	174075189,174078967,174081151,174081923,174117982	174075527,174079090,174081248,174082001,174118051	0.975000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	237085295	237085344	237085332	+	High_confidence	6	6	31	1.180137	4.349200	chr2	237085222	237085359	LINE|L2|L2	-	chr2	237085311	237100466	COPS8|ENST00000354371.6	+	237085311,237087126,237088604,237089861,237094089,237095821,237096821,237097662	237086042,237087197,237088653,237089994,237094197,237095884,237096869,237100466	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr8	143281669	143281690	143281686	-	High_confidence	54	56	148	5.634203	5.096780	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.648649
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chrX	47658582	47658630	47658629	-	High_confidence	6	9	39	1.484689	2.955830	chrX	47658369	47658606	SINE|MIR|MIR	-	chrX	47651800	47659107	UXT|ENST00000485641.5	-	47651800,47652080,47657182,47657781,47658829	47651895,47652144,47657290,47657863,47659107	0.923077
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	218287266	218287306	218287279	-	High_confidence	15	15	55	2.093792	5.076725	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.600000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	114624940	114625007	114625006	-	High_confidence	36	42	172	6.547857	4.820132	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.848837
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	122406522	122406531	122406530	+	RAMPAGE_only	4	4	11	0.418758	2.521928	chr9	122405232	122406719	LTR|ERV1|LTR12C	-	chr9	122403406	122448977	AL359636.1|ENST00000433572.2	+	122403406,122404671,122415713,122416767,122447428,122448929	122403456,122404791,122415782,122416885,122447545,122448977	0.636364
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	32997349	32997350	32997349	-	High_confidence	6	6	6	0.228414	2.584963	chr9	32997347	32997748	LINE|L2|L2c	-	chr9	32972762	32997360	APTX|ENST00000479656.5	-	32972762,32974457,32984630,32985970,32987543,32988078,32989758,32997242	32973652,32974561,32984857,32986030,32987842,32988124,32989895,32997360	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chrX	103577211	103577212	103577211	+	High_confidence	14	19	19	0.723310	3.471354	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr18	34709331	34709374	34709342	+	High_confidence	4	6	23	0.875586	3.820889	chr18	34709150	34709395	LINE|L2|L2c	-	chr18	34709355	34812056	DTNA|ENST00000585446.1	+	34709355,34794036,34806218,34811958	34709517,34794250,34806304,34812056	0.608696
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	100268197	100268281	100268280	+	RAMPAGE_only	24	25	84	3.197791	4.167107	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.988095
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr13	24968471	24968484	24968471	-	High_confidence	6	6	17	0.647172	3.616875	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24924676	24968277	TPTE2P1|ENST00000434100.5	-	24924676,24925847,24933494,24951396,24967391,24968205	24924875,24925894,24933536,24951488,24967453,24968277	0.588235
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr10	51937982	51937990	51937989	+	RAMPAGE_only	10	10	19	0.723310	3.572431	chr10	51937780	51938431	DNA|TcMar-Tigger|MER44D	+	chr10	52046866	52294176	PRKG1|ENST00000373975.3	+	52046866,52054483,52062536,52081596,52133839,52161888,52251569,52271349,52272391,52280788,52282152,52288725,52288930,52290223,52293801	52046926,52054561,52062631,52081657,52133905,52161963,52251666,52271489,52272481,52280930,52282316,52288848,52288993,52290290,52294176	0.526316
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	184568398	184568409	184568398	+	High_confidence	3	3	6	0.228414	2.584963	chr1	184568204	184568449	LINE|L1|L1MB3	-	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr16	20674497	20674498	20674497	+	High_confidence	28	29	40	1.522758	3.508403	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.850000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	120596753	120596777	120596763	-	RAMPAGE_only	4	4	14	0.532965	2.610577	chr3	120596706	120596936	SINE|MIR|MIR	+	chr3	120392292	120451253	FSTL1|ENST00000295633.7	-	120392292,120399882,120402807,120403241,120404852,120409531,120410951,120411853,120415922,120450683,120450896	120396996,120399959,120402918,120403354,120404971,120409662,120410984,120411983,120416027,120450746,120451253	0.571429
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr2	127082970	127082988	127082987	-	High_confidence	7	12	19	0.723310	3.616349	chr2	127082958	127083081	LINE|L1|L1MC4	-	chr2	127048022	127082065	BIN1|NM_001320634.1	-	127048022,127050420,127050801,127059010,127062114,127063570,127063932,127068923,127069994,127070552,127070761,127076625,127081831	127048633,127050522,127050912,127059155,127062197,127063646,127064018,127069031,127070090,127070647,127070816,127076706,127082065	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	97904651	97904679	97904675	-	RAMPAGE_only	16	16	51	1.941516	5.078563	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.725490
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	169182804	169182839	169182832	-	High_confidence	9	10	44	1.675033	3.589802	chr6	169182607	169182961	LTR|ERVL-MaLR|THE1A	-	chr6	169175303	169182740	LINC02544|ENST00000564830.2	-	169175303,169179275,169182683	169175671,169179394,169182740	0.840909
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr3	112603463	112603494	112603463	-	RAMPAGE_only	5	9	37	1.408551	4.206226	chr3	112603244	112603521	SINE|Alu|AluSx1	+	chr3	112596793	112641269	CCDC80|ENST00000206423.7	-	112596793,112607175,112609977,112616709,112618967,112630112,112638027,112640326	112605763,112607256,112610081,112616858,112619104,112630269,112639916,112641269	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr7	107580245	107580267	107580245	+	High_confidence	1106	1112	5357	203.935300	7.288690	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.916184
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr15	80059915	80059933	80059918	+	High_confidence	122	154	384	14.618472	5.578889	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059908	80138379	MSTRG.13746.8	+	80059908,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80098578,80120498,80121820,80122800,80131293,80138379	0.989583
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	106541105	106541124	106541123	+	High_confidence	6	6	20	0.761379	3.346439	chr6	106541083	106541354	DNA|hAT-Charlie|MER102c	-	chr6	106541133	106555897	CRYBG1|ENST00000457437.1	+	106541133,106541585,106543439,106544570,106544787,106551851,106552183,106553454,106555767	106541295,106541621,106543597,106544697,106544933,106551978,106552216,106553567,106555897	0.950000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	15780729	15780733	15780729	-	High_confidence	12	12	24	0.913655	2.992856	chr12	15780696	15780826	LINE|L2|L2c	+	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.666667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr12	79455514	79455528	79455514	-	High_confidence	4	4	13	0.494896	2.931209	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr9	73160319	73160376	73160375	+	High_confidence	4	5	35	1.332413	4.536286	chr9	73160421	73160511	SINE|MIR|MIR	+	chr9	73160262	73167869	ANXA1|ENST00000495713.5	+	73160262,73160802,73162781,73163475,73165115,73166096,73167496	73160376,73160893,73162861,73163532,73165209,73166192,73167869	0.742857
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr13	27445094	27445116	27445094	-	RAMPAGE_only	3	3	12	0.456827	3.084963	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.916667
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr6	43013392	43013393	43013392	-	High_confidence	35	35	49	1.865378	4.912539	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr5	151669675	151669724	151669675	-	RAMPAGE_only	33	33	249	9.479166	5.862731	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.987952
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr16	2757801	2757823	2757801	+	High_confidence	3	3	9	0.342620	2.725481	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	21879004	21879005	21879004	-	RAMPAGE_only	5	5	7	0.266483	2.521641	chr1	21878794	21878955	SINE|MIR|MIR3	-	chr1	21822244	21881503	MSTRG.563.1	-	21822244,21822689,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338	21822559,21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881503	1.000000
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr17	47067498	47067518	47067498	-	High_confidence	227	251	889	33.843286	6.025197	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.899888
pericardium_fibroblast_NONE_and_female_fetal_20_weeks	chr1	15305736	15305738	15305736	+	High_confidence	6	11	16	0.609103	3.106891	chr1	15305544	15305895	LTR|ERVL-MaLR|THE1A	+	chr1	15305760	15330059	FHAD1|ENST00000375996.6	+	15305760,15308612,15313056,15316377,15317823,15324451,15327058,15328276,15329345	15305819,15308736,15313187,15316467,15317928,15324559,15327142,15328429,15330059	0.875000
Peyers_patch_female_adult_53_years	chr11	87359752	87359753	87359752	+	High_confidence	8	8	12	1.012651	2.913977	chr11	87359683	87359924	LTR|ERVL|LTR18A	+	chr11	87359756	87558484	STRG.63032.3	+	87359756,87362356,87553298	87359950,87362476,87558484	0.500000
Peyers_patch_female_adult_53_years	chr4	4269605	4269614	4269609	-	High_confidence	14	15	41	3.459891	3.270994	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	1.000000
Peyers_patch_female_adult_53_years	chr6	167271330	167271343	167271330	+	High_confidence	3	3	9	0.759488	2.725481	chr6	167271259	167271341	DNA|hAT-Charlie|MER5A	+	chr6	167271168	167296196	UNC93A|ENST00000503433.5	+	167271168,167291438,167294516,167296031	167271458,167291576,167294698,167296196	0.666667
Peyers_patch_female_adult_53_years	chr1	31666506	31666630	31666525	-	High_confidence	6	6	58	4.894480	4.919831	chr1	31666238	31666608	LINE|L2|L2a	+	chr1	31660584	31666385	COL16A1|ENST00000470799.5	-	31660584,31661065,31661413,31661659,31662333,31662586,31665171,31665582,31665881,31666036	31660638,31661119,31661458,31661704,31662387,31662658,31665234,31665618,31665935,31666385	0.568966
Peyers_patch_female_adult_53_years	chr6	30830627	30830641	30830640	-	High_confidence	7	7	16	1.350201	3.452820	chr6	30830591	30830730	LTR|Gypsy|MamGypLTR1b	-	chr6	30812865	30830659	LINC00243|NR_130726.1	-	30812865,30830514	30814772,30830659	0.625000
Peyers_patch_female_adult_53_years	chr16	28608305	28608348	28608305	-	High_confidence	2	2	20	1.687752	3.431624	chr16	28608009	28608286	SINE|Alu|AluSp	-	chr16	28605195	28608920	SULT1A1|ENST00000569554.5	-	28605195,28606055,28606760,28606950,28608290,28608477,28608707	28605933,28606236,28606855,28607077,28608388,28608603,28608920	0.750000
Peyers_patch_female_adult_53_years	chr14	101731410	101731433	101731413	+	High_confidence	6	6	34	2.869178	4.432620	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.882353
Peyers_patch_female_adult_53_years	chr8	61578141	61578142	61578141	+	High_confidence	338	340	347	29.282493	5.982836	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.976945
Peyers_patch_female_adult_53_years	chr4	2037095	2037120	2037119	+	High_confidence	13	13	22	1.856527	3.844233	chr4	2036935	2037276	LTR|ERVL-MaLR|MSTA	+	chr4	2036487	2043964	STRG.23799.2	+	2036487,2039996,2042326,2042735,2043860	2036661,2042068,2042484,2042824,2043964	0.954545
Peyers_patch_female_adult_53_years	chr5	9409605	9409615	9409614	-	RAMPAGE_only	40	40	64	5.400806	5.245865	chr5	9409587	9409722	SINE|MIR|MIR1_Amn	+	chr5	9202123	9380201	SEMA5A|ENST00000513968.4	-	9202123,9224673,9226868,9237827,9318371,9337712,9379822,9380106	9202240,9224887,9226967,9237890,9318417,9337812,9380023,9380201	0.515625
Peyers_patch_female_adult_53_years	chr19	38820161	38820194	38820161	+	High_confidence	7	7	18	1.518977	3.614369	chr19	38820053	38820358	SINE|Alu|AluY	-	chr19	38820165	38823223	AC104534.1|ENST00000594558.1	+	38820165,38822984	38820492,38823223	0.888889
Peyers_patch_female_adult_53_years	chr3	39407631	39407683	39407682	+	High_confidence	8	9	31	2.616015	3.656565	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.774194
Peyers_patch_female_adult_53_years	chr15	80059915	80059933	80059918	+	High_confidence	43	49	84	7.088557	4.288788	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.964286
Peyers_patch_female_adult_53_years	chr1	119379275	119379318	119379317	-	High_confidence	48	50	166	14.008340	6.041574	chr1	119378945	119379469	LTR|ERVL|MER68	-	chr1	119375471	119379391	STRG.5323.3	-	119375471	119379391	0.518072
Peyers_patch_female_adult_53_years	chr5	129440648	129440671	129440670	-	High_confidence	5	5	12	1.012651	3.084963	chr5	129440292	129440887	LTR|ERVL|MLT2B5	-	chr5	129440190	129440478	STRG.32430.1	-	129440190	129440478	0.750000
Peyers_patch_female_adult_53_years	chr19	3062922	3062925	3062924	-	High_confidence	7	11	17	1.434589	3.454822	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	1.000000
Peyers_patch_female_adult_53_years	chr6	79631273	79631358	79631302	+	High_confidence	78	78	323	27.257191	6.619185	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.969040
Peyers_patch_female_adult_53_years	chr9	92536621	92536675	92536651	-	High_confidence	9	9	40	3.375503	4.576618	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.825000
Peyers_patch_female_adult_53_years	chr19	38820394	38820402	38820394	+	High_confidence	3	3	9	0.759488	2.725481	chr19	38820408	38820631	SINE|MIR|MIR	+	chr19	38820165	38823223	AC104534.1|ENST00000594558.1	+	38820165,38822984	38820492,38823223	0.888889
Peyers_patch_female_adult_53_years	chr14	24423141	24423187	24423164	+	High_confidence	63	69	357	30.126369	5.684409	chr14	24422287	24423820	LINE|L2|L2b	-	chr14	24423117	24437425	STRG.71986.6	+	24423117,24430713,24431462,24432721,24436387,24437035	24423476,24430931,24432610,24436179,24436489,24437425	0.957983
Peyers_patch_female_adult_53_years	chr2	237579563	237579589	237579588	-	High_confidence	6	6	22	1.856527	3.516028	chr2	237579285	237579685	LTR|ERVL-MaLR|MLT1C	-	chr2	237574325	237579570	RAB17|ENST00000477149.5	-	237574325,237575386,237577256	237575128,237575480,237579570	1.000000
Peyers_patch_female_adult_53_years	chr10	110881148	110881172	110881148	+	High_confidence	4	5	11	0.928263	2.846439	chr10	110881075	110881155	DNA|TcMar-Mariner|MADE2	+	chr10	110880318	110887798	PDCD4|ENST00000492932.5	+	110880318,110881232,110883002,110885252,110887664	110880485,110881535,110883097,110885366,110887798	0.909091
Peyers_patch_female_adult_53_years	chr6	2968829	2968832	2968831	-	RAMPAGE_only	5	9	11	0.928263	2.732159	chr6	2968783	2968841	LINE|L1|HAL1	-	chr6	2948162	2970743	SERPINB6|ENST00000644178.1	-	2948162,2948913,2953043,2954591,2955523,2959167,2966399	2948699,2949069,2953186,2954709,2955670,2959342,2970743	1.000000
Peyers_patch_female_adult_53_years	chr1	9874112	9874138	9874137	-	High_confidence	3	3	11	0.928263	2.721928	chr1	9874001	9874285	LINE|L2|L2a	+	chr1	9848359	9874814	STRG.436.2	-	9848359,9871186,9871968,9874033	9850776,9871277,9872088,9874814	0.636364
Peyers_patch_female_adult_53_years	chr16	63618044	63618046	63618045	-	High_confidence	80	120	139	11.729875	5.837844	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63302295	63618046	STRG.80915.1	-	63302295,63334599,63531224,63617692	63305420,63334667,63531304,63618046	0.863309
Peyers_patch_female_adult_53_years	chr3	69237164	69237186	69237182	-	RAMPAGE_only	3	3	10	0.843876	2.721928	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69169989	69386073	FRMD4B|ENST00000398540.7	-	69169989,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69195230,69196254,69196899,69198697,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69385827	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195141,69195364,69196396,69197038,69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69386073	0.600000
Peyers_patch_female_adult_53_years	chr1	119829458	119829467	119829458	+	High_confidence	7	7	18	1.518977	3.381580	chr1	119829457	119829519	SINE|MIR|MIR3	-	chr1	119829312	119848855	STRG.5330.1	+	119829312,119844192,119844455,119846521	119829496,119844281,119846006,119848855	0.611111
Peyers_patch_female_adult_53_years	chr7	104926544	104926641	104926626	-	High_confidence	158	176	547	46.160010	6.590150	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104911915	104926630	LHFPL3-AS2|ENST00000453666.2	-	104911915,104915705,104917559,104920384,104926452	104912076,104915827,104917980,104920425,104926630	0.723949
Peyers_patch_female_adult_53_years	chr4	105556409	105556434	105556433	+	RAMPAGE_only	13	13	52	4.388155	4.539593	chr4	105556273	105556541	LINE|L2|L2c	-	chr4	105552621	105680913	ARHGEF38|ENST00000420470.2	+	105552621,105589247,105613383,105630897,105636402,105645187,105648548,105654064,105655602,105659053,105666176,105667128,105667443,105677751	105552961,105589435,105613507,105631045,105636420,105645387,105648682,105654169,105655722,105659365,105666320,105667327,105667703,105680913	0.519231
Peyers_patch_female_adult_53_years	chr6	101203196	101203272	101203249	+	High_confidence	41	53	201	16.961905	5.987442	chr6	101203057	101203452	LTR|ERVL-MaLR|MLT1A1	+	chr6	101203255	101682604	STRG.37905.1	+	101203255,101205076,101244629,101355522,101382723,101398984,101621948,101626379,101676622,101682552	101203374,101205143,101244656,101355560,101382779,101399392,101622116,101626637,101676804,101682604	0.651741
Peyers_patch_female_adult_53_years	chr14	81170402	81170420	81170419	-	High_confidence	4	4	11	0.928263	3.095795	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.727273
Peyers_patch_female_adult_53_years	chr9	98807074	98807108	98807107	-	High_confidence	4	5	13	1.097039	3.022055	chr9	98806836	98807126	SINE|Alu|AluJr4	-	chr9	98798465	98807564	AL807776.1|ENST00000647710.1	-	98798465,98806770	98799609,98807564	0.846154
Peyers_patch_female_adult_53_years	chr9	72363564	72363574	72363573	-	High_confidence	4	4	11	0.928263	2.913977	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.545455
Peyers_patch_female_adult_53_years	chr1	2048524	2048551	2048550	+	RAMPAGE_only	25	45	89	7.510495	4.923610	chr1	2048414	2048562	LINE|L2|L2a	-	chr1	2050469	2185395	PRKCZ|ENST00000378567.7	+	2050469,2055440,2056483,2059540,2135261,2144209,2146026,2148871,2150789,2155994,2169517,2172054,2172300,2173896,2174753,2175223,2184582,2184921	2050701,2055562,2056573,2059591,2135347,2144341,2146108,2148924,2150978,2156092,2169604,2172190,2172388,2174016,2174833,2175313,2184698,2185395	0.921348
Peyers_patch_female_adult_53_years	chr11	287407	287465	287455	+	RAMPAGE_only	4	4	18	1.518977	3.292770	chr11	287385	287496	LINE|L2|L2a	-	chr11	278364	288978	STRG.59689.5	+	278364,279326,279833,280083,282701,284229,284474,285165,288618	278598,279607,279872,281839,282797,284400,284642,288492,288978	0.944444
Peyers_patch_female_adult_53_years	chr5	130897616	130897637	130897616	-	High_confidence	8	8	20	1.687752	3.721928	chr5	130897566	130903669	LINE|L1|L1PA3	+	chr5	130897009	130897908	STRG.32531.2	-	130897009	130897908	0.800000
Peyers_patch_female_adult_53_years	chr2	232816731	232816752	232816731	+	RAMPAGE_only	22	22	84	7.088557	4.545500	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	1.000000
Peyers_patch_female_adult_53_years	chr12	643627	643636	643635	-	High_confidence	5	5	10	0.843876	3.121928	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.500000
Peyers_patch_female_adult_53_years	chr2	113184962	113184980	113184962	+	High_confidence	7	7	24	2.025302	2.914016	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.916667
Peyers_patch_female_adult_53_years	chr3	32077547	32077572	32077547	-	High_confidence	2	2	9	0.759488	2.503258	chr3	32077310	32077987	LTR|ERV1|MER50B	+	chr3	31876432	32077580	OSBPL10|ENST00000479173.1	-	31876432,31879654,32046490,32077395	31876512,31879830,32046603,32077580	0.888889
Peyers_patch_female_adult_53_years	chr10	122576688	122576715	122576712	+	RAMPAGE_only	8	8	29	2.447240	3.978334	chr10	122576744	122576876	SINE|Alu|FLAM_C	+	chr10	122560757	122643736	STRG.59471.6	+	122560757,122565966,122570161,122570889,122572313,122573714,122576398,122577810,122578717,122579577,122580865,122581792,122582599,122584321,122585270,122586059,122588943,122590664,122591478,122592271,122593568,122594495,122595302,122597973,122598773,122600063,122600990,122601796,122603099,122605049,122605855,122607158,122609108,122613973,122615276,122617227,122618016,122619307,122620252,122621056,122625276,122625932,122629839,122630287,122630960,122631854,122632860,122633190,122635990,122637127,122640039,122643121	122560831,122565996,122570209,122570937,122572361,122573762,122576722,122577840,122578759,122579901,122580895,122581825,122582923,122584351,122585309,122586383,122589267,122590694,122591517,122592595,122593598,122594528,122595626,122598012,122599097,122600093,122601023,122602120,122603129,122605082,122606179,122607188,122609141,122614297,122615306,122617260,122618340,122619337,122620291,122621380,122625303,122625965,122629993,122630490,122631281,122631875,122632890,122633341,122636199,122637312,122640449,122643736	1.000000
Peyers_patch_female_adult_53_years	chr1	162419807	162419863	162419842	+	High_confidence	13	16	90	7.594883	5.226294	chr1	162419359	162419942	LTR|ERVK|LTR14C	+	chr1	162419814	162424576	STRG.6334.1	+	162419814	162424576	0.911111
Peyers_patch_female_adult_53_years	chr19	7456402	7456403	7456402	+	RAMPAGE_only	5	8	8	0.675101	2.500000	chr19	7456434	7456770	SINE|Alu|AluSz	+	chr19	7459612	7472477	STRG.88424.6	+	7459612,7462151,7463817,7466917,7467070,7467213,7468824,7469903,7470125	7459994,7462334,7464690,7466974,7467118,7467684,7469131,7470029,7472477	1.000000
Peyers_patch_female_adult_53_years	chrX	73837439	73837465	73837450	-	RAMPAGE_only	13	13	31	2.616015	3.440070	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.935484
Peyers_patch_female_adult_53_years	chr20	3795750	3795789	3795750	+	High_confidence	8	10	33	2.784790	4.306075	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
Peyers_patch_female_adult_53_years	chr11	19829739	19829787	19829739	+	High_confidence	4	7	26	2.194077	4.163856	chr11	19829736	19829918	SINE|MIR|MIRb	-	chr11	19829728	20080184	STRG.60690.3	+	19829728,19832483,19842870,19868924,19879868,19892433,19933175,19939660,19946400,19948690,19984124,20035958,20043980,20044967,20048727,20054079,20055768,20062306,20068185,20068323,20077551,20077992,20080063	19829842,19832601,19842923,19868997,19880127,19892594,19934277,19939773,19946509,19949080,19984247,20036097,20044272,20045670,20049195,20054240,20055957,20062359,20068209,20068398,20077635,20078104,20080184	0.615385
Peyers_patch_female_adult_53_years	chr17	16464653	16464696	16464695	-	RAMPAGE_only	4	4	10	0.843876	3.121928	chr17	16464610	16464686	DNA|hAT-Charlie|Charlie24	-	chr17	16441576	16448294	LRRC75A|ENST00000409887.3	-	16441576,16446879,16447844	16444131,16447031,16448294	0.600000
Peyers_patch_female_adult_53_years	chr9	20658312	20658349	20658312	+	High_confidence	9	9	40	3.375503	3.669660	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.825000
Peyers_patch_female_adult_53_years	chr22	39021125	39021156	39021146	+	High_confidence	10	10	25	2.109690	3.464235	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.920000
Peyers_patch_female_adult_53_years	chr2	127630663	127630664	127630663	+	RAMPAGE_only	9	9	13	1.097039	3.026987	chr2	127630581	127630704	SINE|MIR|MIR3	-	chr2	127620034	127637725	MYO7B|ENST00000491278.5	+	127620034,127621981,127623201,127624092,127625367,127626974,127627183,127628371,127629644,127630777,127631205,127631599,127632245,127633257,127634175,127635119,127635721,127636207,127636544,127636793	127620466,127622101,127623375,127624320,127625535,127627092,127627310,127628535,127629826,127630908,127631363,127631753,127632401,127633363,127634683,127635226,127635907,127636324,127636628,127637725	0.923077
Peyers_patch_female_adult_53_years	chr1	150173276	150173348	150173347	+	High_confidence	29	31	62	5.232030	4.823231	chr1	150172963	150173624	LTR|ERVL|MER77	-	chr1	150173048	150181429	AC242988.2|ENST00000647691.1	+	150173048,150173729,150180911	150173600,150173814,150181429	0.790323
Peyers_patch_female_adult_53_years	chr11	116821380	116821865	116821837	-	RAMPAGE_only	824	839	6152	519.152438	8.055968	chr11	116821645	116821838	LTR|ERVL|MLT2F	+	chr11	116820701	116823295	APOA4|NM_000482.3	-	116820701,116822658,116823142	116821881,116822785,116823295	0.997562
Peyers_patch_female_adult_53_years	chr15	69314367	69314434	69314416	+	High_confidence	5	5	23	1.940915	3.087929	chr15	69314411	69314496	SINE|MIR|MIR3	+	chr15	69314402	69404504	PAQR5|ENST00000561153.5	+	69314402,69337340,69359965,69379882,69384676,69389653,69397467,69399973,69403580	69314794,69337505,69360131,69380010,69384882,69389780,69397564,69400115,69404504	1.000000
Peyers_patch_female_adult_53_years	chr1	200298329	200298359	200298329	-	High_confidence	28	28	61	5.147643	4.659949	chr1	200297863	200298573	LINE|L2|L2c	+	chr1	200294524	200298157	STRG.7766.1	-	200294524,200297840	200294572,200298157	0.622951
Peyers_patch_female_adult_53_years	chr7	103152531	103152562	103152561	+	High_confidence	19	25	66	5.569581	4.744005	chr7	103152344	103152807	LTR|ERV1|LTR2	+	chr7	103151939	103234855	STRG.44317.1	+	103151939,103194976	103153073,103234855	0.909091
Peyers_patch_female_adult_53_years	chr12	72432463	72432482	72432480	+	High_confidence	33	88	172	14.514665	5.960708	chr12	72432166	72432618	LTR|ERVK|LTR22A	-	chr12	72432395	72671028	STRG.67653.1	+	72432395,72469757,72473066,72499497,72542290,72562164,72562852,72568567,72575254,72575486,72618890,72621107,72621643,72652321,72653015,72656926,72663051	72432566,72469912,72473180,72499635,72542356,72562230,72563040,72568656,72575388,72575542,72619038,72621205,72621751,72652489,72653156,72657008,72671028	0.825581
Peyers_patch_female_adult_53_years	chr1	24108960	24108975	24108965	-	RAMPAGE_only	8	10	20	1.687752	3.576618	chr1	24108883	24109009	SINE|MIR|MIR3	+	chr1	24056036	24112175	MYOM3|ENST00000374434.3	-	24056036,24058923,24061059,24061272,24061945,24063125,24063491,24064071,24065890,24067020,24067969,24068222,24071116,24071968,24074159,24075318,24076158,24080015,24081329,24082000,24082592,24084467,24086643,24089537,24090064,24090796,24092173,24092946,24094852,24095441,24097922,24099679,24105919,24107072,24107992,24108475,24112030	24057627,24058979,24061082,24061309,24062109,24063234,24063530,24064159,24066001,24067088,24068029,24068367,24071253,24072013,24074269,24075475,24076273,24080194,24081456,24082188,24082714,24084639,24086827,24089665,24090118,24090996,24092315,24093108,24094990,24095486,24098011,24099775,24106077,24107232,24108073,24108654,24112175	0.500000
Peyers_patch_female_adult_53_years	chr4	47187727	47187755	47187754	-	High_confidence	7	7	20	1.687752	3.746439	chr4	47187646	47188171	LINE|L2|L2a	+	chr4	47111498	47187720	STRG.25263.1	-	47111498,47187316	47111855,47187720	0.900000
Peyers_patch_female_adult_53_years	chr2	113704173	113704174	113704173	-	High_confidence	36	36	36	3.037953	3.985781	chr2	113703868	113704969	LTR|ERV1|LTR12E	-	chr2	113677701	113704078	AC017074.1|ENST00000424612.1	-	113677701,113688160,113703696	113677783,113688257,113704078	0.888889
Peyers_patch_female_adult_53_years	chr1	15758211	15758246	15758217	+	High_confidence	5	5	14	1.181426	2.931209	chr1	15758111	15758311	SINE|MIR|MIRb	-	chr1	15758418	15786594	FBLIM1|ENST00000375766.7	+	15758418,15764495,15764963,15767375,15768527,15770408,15774617,15777169,15784547	15758848,15764685,15765233,15767563,15768630,15770578,15774796,15777287,15786594	0.571429
Peyers_patch_female_adult_53_years	chr2	241372946	241372950	241372949	+	RAMPAGE_only	7	7	12	1.012651	2.594907	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241356296	241466030	FARP2|ENST00000373287.8	+	241356296,241373083,241403827,241404798,241407536,241411032,241413306,241417961,241431678,241434157,241434961,241436480,241441303,241456746,241462522,241463334,241463898,241465459	241356388,241373290,241403932,241404841,241407615,241411130,241413421,241418109,241431774,241434321,241435030,241436538,241441556,241456922,241462612,241463468,241463980,241466030	0.583333
Peyers_patch_female_adult_53_years	chr9	17014129	17014165	17014163	+	High_confidence	13	25	67	5.653968	4.735841	chr9	17013826	17014266	LTR|ERVL|MLT2B1	+	chr9	17014088	17052058	STRG.51354.1	+	17014088,17020241,17048052,17048918	17014221,17020316,17048092,17052058	0.641791
Peyers_patch_female_adult_53_years	chr5	168591019	168591072	168591019	+	High_confidence	7	7	28	2.362852	3.655046	chr5	168590593	168591206	DNA|TcMar-Tigger|MER6A	+	chr5	168591039	168666877	STRG.33991.1	+	168591039,168665020,168666355	168591311,168665129,168666877	0.714286
Peyers_patch_female_adult_53_years	chr1	33021381	33021417	33021416	-	High_confidence	15	16	55	4.641317	3.983759	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33000276	33021690	STRG.1643.5	-	33000276,33009802,33013206,33014521,33021366,33021592	33009682,33010833,33013402,33014594,33021461,33021690	1.000000
Peyers_patch_female_adult_53_years	chr5	148654558	148654583	148654558	-	High_confidence	4	4	12	1.012651	2.845351	chr5	148654529	148654620	SINE|MIR|MIRb	+	chr5	148481551	148654527	HTR4|NR_104445.1	-	148481551,148490599,148509455,148523192,148548667,148550136,148636988,148654061	148483293,148490846,148510024,148523346,148548868,148550262,148637061,148654527	0.833333
Peyers_patch_female_adult_53_years	chr20	44355234	44355277	44355241	-	High_confidence	16	22	85	7.172945	4.686315	chr20	44355193	44355255	SINE|MIR|MIR	+	chr20	44346646	44355232	STRG.92975.2	-	44346646,44351867,44355018	44350856,44351950,44355232	0.964706
Peyers_patch_female_adult_53_years	chr12	53173808	53173862	53173836	-	High_confidence	6	6	15	1.265814	3.456565	chr12	53173811	53174022	LINE|L1|L1MB7	-	chr12	53170070	53173790	CSAD|ENST00000424845.5	-	53170070,53170422,53171325,53171877,53173344,53173727	53170126,53170502,53171441,53171988,53173476,53173790	0.600000
Peyers_patch_female_adult_53_years	chr16	89103396	89103440	89103396	+	High_confidence	7	7	26	2.194077	3.813661	chr16	89103244	89103438	LTR|ERVL-MaLR|MLT1D	-	chr16	89102695	89122832	ACSF3|ENST00000543676.1	+	89102695,89112091,89114338,89120800,89122373	89102759,89112246,89114487,89120913,89122832	0.807692
Peyers_patch_female_adult_53_years	chr4	86453184	86453214	86453195	-	High_confidence	5	8	51	4.303767	4.103031	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016074	86453196	MAPK10|ENST00000641854.1	-	86016074,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86107352,86159467,86194407,86354644,86453196	0.960784
Peyers_patch_female_adult_53_years	chr7	128622497	128622529	128622528	+	RAMPAGE_only	6	6	10	0.843876	2.721928	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.900000
Peyers_patch_female_adult_53_years	chr10	102368765	102368785	102368784	+	RAMPAGE_only	3	3	9	0.759488	2.750000	chr10	102368824	102368910	SINE|MIR|MIRc	+	chr10	102366812	102382705	STRG.58912.7	+	102366812,102368217,102369210,102369710,102369860,102370173,102370383,102370706,102375358,102376271,102376559,102376934,102379283,102379520,102379852,102380505,102381126,102382055	102367560,102368832,102369387,102369775,102369984,102370245,102370478,102370860,102375584,102376432,102376800,102377140,102379434,102379651,102380362,102380686,102381255,102382705	0.888889
Peyers_patch_female_adult_53_years	chr7	101308295	101308325	101308324	+	High_confidence	5	5	17	1.434589	3.454822	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	1.000000
Peyers_patch_female_adult_53_years	chr9	110678223	110678226	110678223	+	RAMPAGE_only	12	12	19	1.603364	3.155222	chr9	110678111	110678442	SINE|Alu|AluJo	-	chr9	110687216	110706188	MUSK|ENST00000374439.1	+	110687216,110695402,110697324,110706075	110687268,110695530,110697466,110706188	0.578947
Peyers_patch_female_adult_53_years	chr19	52093952	52093991	52093990	-	High_confidence	3	3	7	0.590713	2.521641	chr19	52093852	52094032	SINE|Alu|AluJb	+	chr19	52076907	52093899	ZNF841|ENST00000599430.1	-	52076907,52084786,52088936,52093845	52077084,52084878,52089002,52093899	0.857143
Peyers_patch_female_adult_53_years	chr9	129489073	129489126	129489125	+	High_confidence	4	4	14	1.181426	3.378783	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.857143
Peyers_patch_female_adult_53_years	chr7	6590251	6590286	6590251	+	High_confidence	4	5	19	1.603364	3.431624	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.684211
Peyers_patch_female_adult_53_years	chr5	23951339	23951372	23951365	+	High_confidence	4	4	12	1.012651	2.688722	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	1.000000
Peyers_patch_female_adult_53_years	chr9	4726633	4726634	4726633	-	RAMPAGE_only	11	11	17	1.434589	3.175123	chr9	4725911	4728263	DNA|TcMar-Tigger|Tigger1	-	chr9	4712974	4728847	STRG.51167.4	-	4712974,4718418,4719134,4722505,4726082	4713096,4718537,4719307,4722625,4728847	1.000000
Peyers_patch_female_adult_53_years	chr5	132277856	132277893	132277856	-	High_confidence	4	5	31	2.616015	3.471159	chr5	132277617	132277920	SINE|Alu|AluJr	+	chr5	132217222	132277600	P4HA2|ENST00000416053.5	-	132217222,132217751,132218544,132277341	132217348,132217848,132218644,132277600	0.645161
Peyers_patch_female_adult_53_years	chr10	94733203	94733204	94733203	+	RAMPAGE_only	11	11	13	1.097039	2.855389	chr10	94733122	94733262	SINE|MIR|MIR3	+	chr10	94688153	94735574	STRG.58453.11	+	94688153,94694916,94720395,94724345,94733296	94688274,94706960,94720537,94724533,94735574	0.846154
Peyers_patch_female_adult_53_years	chr2	240022172	240022211	240022172	-	RAMPAGE_only	7	7	23	1.940915	2.652826	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.913043
Peyers_patch_female_adult_53_years	chr6	127330859	127330927	127330859	-	High_confidence	4	4	20	1.687752	3.471354	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.850000
Peyers_patch_female_adult_53_years	chr6	30136133	30136140	30136133	+	High_confidence	4	5	13	1.097039	3.392747	chr6	30136119	30136206	LINE|CR1|L3b	+	chr6	30136123	30137198	TRIM40|ENST00000489892.1	+	30136123,30136732	30136598,30137198	0.923077
Peyers_patch_female_adult_53_years	chr13	30376953	30376965	30376953	-	High_confidence	7	7	15	1.265814	3.323231	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30357741	30377145	LINC00426|ENST00000420219.5	-	30357741,30358253,30363160,30372284,30375466,30376826	30357889,30358376,30363226,30372374,30375776,30377145	0.866667
Peyers_patch_female_adult_53_years	chr12	126772230	126772238	126772230	-	High_confidence	5	6	18	1.518977	3.454822	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126746284	126772253	STRG.69293.1	-	126746284,126747930,126760931,126763414,126770192,126772078	126746332,126748127,126761057,126763498,126770254,126772253	0.777778
Peyers_patch_female_adult_53_years	chr1	54630734	54630802	54630760	+	RAMPAGE_only	2	2	12	1.012651	3.277613	chr1	54630775	54633691	LTR|ERVK|HERVK9-int	+	chr1	54568985	54710260	STRG.2993.1	+	54568985,54585834,54592545,54593940,54594555,54597258,54599295,54601268,54602668,54603870,54604345,54605075,54607133,54607941,54630733,54634687,54652852,54665166,54668853,54670496,54670799,54673090,54673700,54678741,54679262,54679890,54682655,54686257,54692423,54695375,54700320,54701142,54702089,54702622,54706434,54709013,54709945	54584862,54585904,54592606,54594039,54594691,54597415,54599415,54601413,54602724,54603937,54604429,54605209,54607265,54608068,54630886,54651983,54654157,54665240,54668937,54670576,54670929,54673186,54674151,54678854,54679439,54680045,54682794,54686448,54692561,54695490,54700461,54701322,54702245,54702745,54706537,54709076,54710260	0.500000
Peyers_patch_female_adult_53_years	chr16	87381508	87381509	87381508	-	RAMPAGE_only	8	8	11	0.928263	2.646439	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87329335	87383748	STRG.81822.1	-	87329335,87333885,87335303,87336154,87342876,87343597,87347173,87360294,87366673,87367372,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87358497,87364494,87366802,87367945,87383748	0.727273
Peyers_patch_female_adult_53_years	chr3	37988098	37988099	37988098	+	High_confidence	5	5	8	0.675101	3.000000	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.750000
Peyers_patch_female_adult_53_years	chr3	180870516	180870519	180870516	-	High_confidence	5	5	12	1.012651	3.277613	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180781982	180870475	STRG.23140.1	-	180781982,180847506,180870046	180782124,180847624,180870475	0.833333
Peyers_patch_female_adult_53_years	chr1	216905369	216905378	216905377	-	High_confidence	68	68	117	9.873348	5.709202	chr1	216905163	216905699	LINE|L2|L2b	+	chr1	216503381	216905493	STRG.8432.4	-	216503381,216519151,216564218,216567987,216650972,216677075,216865060,216905247	216507183,216519421,216564380,216568098,216651089,216677491,216865178,216905493	0.529915
Peyers_patch_female_adult_53_years	chr7	151806649	151806690	151806679	+	High_confidence	7	7	28	2.362852	3.979098	chr7	151806685	151806943	SINE|Alu|AluSz6	+	chr7	151806615	151807642	AC093583.1|ENST00000481153.3	+	151806615,151807442	151807036,151807642	0.857143
Peyers_patch_female_adult_53_years	chr4	56216106	56216142	56216141	+	High_confidence	24	24	94	7.932433	5.379411	chr4	56216025	56216165	SINE|MIR|MIR3	+	chr4	56216101	56328625	KIAA1211|ENST00000504228.6	+	56216101,56272320,56298213,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56216273,56272492,56298349,56307699,56310734,56313379,56316689,56323567,56324266,56328625	0.638298
Peyers_patch_female_adult_53_years	chr10	105644496	105644501	105644496	+	High_confidence	4	4	10	0.843876	2.921928	chr10	105644158	105644712	LTR|ERVL|MLT2B3	+	chr10	105644360	105681704	STRG.59006.1	+	105644360,105663803,105677192	105644626,105663936,105681704	0.800000
Peyers_patch_female_adult_53_years	chr19	33395185	33395191	33395190	-	High_confidence	8	10	20	1.687752	3.405822	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	0.600000
Peyers_patch_female_adult_53_years	chr6	42403632	42403668	42403667	-	RAMPAGE_only	11	11	24	2.025302	3.522055	chr6	42403232	42403669	LTR|ERVL-MaLR|MLT1C	+	chr6	42228125	42451261	TRERF1|ENST00000372917.8	-	42228125,42232680,42236204,42243247,42246455,42254850,42256727,42256962,42258134,42259338,42264703,42265750,42268153,42269498,42300637,42362946,42451176	42228669,42232892,42236411,42243361,42246544,42254926,42256831,42257102,42258201,42259723,42264854,42265797,42269251,42269848,42300749,42363079,42451261	0.958333
Peyers_patch_female_adult_53_years	chr15	40650125	40650158	40650125	+	High_confidence	5	11	44	3.713054	4.498871	chr15	40650091	40650181	LINE|L2|L2c	+	chr15	40650126	40654977	KNL1|ENST00000532347.1	+	40650126,40650543,40651470,40652004,40654908	40650378,40650583,40651572,40652105,40654977	0.659091
Peyers_patch_female_adult_53_years	chr7	12624952	12624996	12624952	+	RAMPAGE_only	5	5	12	1.012651	3.084963	chr7	12624833	12624982	LINE|L1|L1MB8	-	chr7	12622837	12626541	SCIN|ENST00000476649.1	+	12622837,12625009,12625761	12622893,12625142,12626541	0.583333
Peyers_patch_female_adult_53_years	chr7	6990709	6990734	6990729	+	High_confidence	17	22	77	6.497844	5.085160	chr7	6989229	6992060	LTR|ERV1|HERVS71-int	-	chr7	6990716	6991855	STRG.40883.1	+	6990716	6991855	0.662338
Peyers_patch_female_adult_53_years	chr13	46374806	46374833	46374832	-	RAMPAGE_only	15	15	29	2.447240	4.280395	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46371940	46378645	RUBCNL|ENST00000439642.1	-	46371940,46377889,46378446	46372597,46378005,46378645	0.793103
Peyers_patch_female_adult_53_years	chr5	131224148	131224197	131224196	-	High_confidence	4	4	15	1.265814	3.006239	chr5	131224178	131224746	LINE|L2|L2	+	chr5	131209769	131224438	STRG.32540.1	-	131209769,131224360	131210153,131224438	0.600000
Peyers_patch_female_adult_53_years	chr20	44384649	44384650	44384649	-	High_confidence	11	11	12	1.012651	2.732159	chr20	44384609	44384776	LTR|ERVL-MaLR|MLT1I	-	chr20	44372745	44384671	HNF4A-AS1|ENST00000609152.1	-	44372745,44384522	44373009,44384671	0.500000
Peyers_patch_female_adult_53_years	chr19	10555125	10555128	10555125	-	RAMPAGE_only	6	6	14	1.181426	2.645593	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	1.000000
Peyers_patch_female_adult_53_years	chr1	159976803	159976859	159976803	+	RAMPAGE_only	8	8	42	3.544279	3.318591	chr1	159976818	159976895	SINE|Alu|FLAM_A	+	chr1	159961232	159988927	STRG.6175.7	+	159961232,159976643	159961405,159988927	0.833333
Peyers_patch_female_adult_53_years	chr3	136625270	136625271	136625270	-	RAMPAGE_only	18	18	22	1.856527	3.572624	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.954545
Peyers_patch_female_adult_53_years	chr20	51136113	51136140	51136113	+	High_confidence	5	6	19	1.603364	3.721612	chr20	51135945	51136185	SINE|MIR|MIR	-	chr20	51136051	51137128	STRG.93191.1	+	51136051	51137128	0.526316
Peyers_patch_female_adult_53_years	chr14	93051015	93051062	93051027	-	RAMPAGE_only	14	16	47	3.966217	3.998516	chr14	93050957	93051066	LINE|L2|L2b	+	chr14	92958233	93066358	ITPK1|ENST00000556185.5	-	92958233,92962354,92962750,92993879,93016675,93066184	92958366,92962395,92962849,92993997,93016801,93066358	0.574468
Peyers_patch_female_adult_53_years	chr1	161206434	161206450	161206434	+	High_confidence	3	3	8	0.675101	2.521641	chr1	161206361	161206444	SINE|tRNA|LFSINE_Vert	+	chr1	161206408	161209727	NDUFS2|ENST00000473321.1	+	161206408,161209192,161209482	161206597,161209313,161209727	0.625000
Peyers_patch_female_adult_53_years	chr1	220090382	220090421	220090402	-	High_confidence	5	6	26	2.194077	3.551428	chr1	220090323	220090490	SINE|Alu|AluJr	-	chr1	220057483	220090462	BPNT1|ENST00000469520.6	-	220057483,220059685,220062756,220067301,220069383,220072849,220073966,220079726,220089685,220090286	220058992,220059791,220062954,220067393,220069432,220072957,220074071,220079854,220089951,220090462	0.961538
Peyers_patch_female_adult_53_years	chr20	44384584	44384602	44384584	-	High_confidence	3	3	10	0.843876	2.725481	chr20	44384438	44384569	LTR|ERVL-MaLR|MLT1I	-	chr20	44372745	44384671	HNF4A-AS1|ENST00000609152.1	-	44372745,44384522	44373009,44384671	0.500000
Peyers_patch_female_adult_53_years	chr2	218431777	218431798	218431777	+	RAMPAGE_only	4	4	14	1.181426	3.546594	chr2	218431649	218431804	SINE|MIR|MIRb	+	chr2	218419122	218449524	VIL1|ENST00000392114.6	+	218419122,218429467,218429596,218429848,218430724,218431856,218432045,218432792,218434525,218435288,218436481,218437123,218438657,218440721,218449222	218419168,218429487,218429675,218429947,218430878,218431957,218432183,218432951,218434705,218435434,218436626,218437312,218438726,218440862,218449524	0.571429
Peyers_patch_female_adult_53_years	chr1	33021446	33021455	33021452	-	High_confidence	3	3	11	0.928263	2.663533	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33000276	33021690	STRG.1643.5	-	33000276,33009802,33013206,33014521,33021366,33021592	33009682,33010833,33013402,33014594,33021461,33021690	1.000000
Peyers_patch_female_adult_53_years	chr9	123179187	123179221	123179220	-	RAMPAGE_only	4	4	13	1.097039	3.238901	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	1.000000
Peyers_patch_female_adult_53_years	chr20	34546833	34546859	34546843	+	High_confidence	73	73	250	21.096897	6.646108	chr20	34546707	34546884	LTR|ERVL-MaLR|MLT1J	-	chr20	34546853	34560345	STRG.92651.3	+	34546853,34549904,34559207,34559346,34559735	34546916,34558908,34559263,34559453,34560345	0.900000
Peyers_patch_female_adult_53_years	chr14	34536100	34536110	34536100	-	RAMPAGE_only	8	8	16	1.350201	3.155639	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34521294	34539698	STRG.72261.3	-	34521294,34529357,34533443,34536093,34539255	34524807,34529475,34533539,34536275,34539698	0.875000
Peyers_patch_female_adult_53_years	chr15	45397248	45397346	45397283	-	High_confidence	265	266	1395	117.720685	5.796519	chr15	45397083	45398013	LTR|ERVL|MER21C	+	chr15	45376608	45397259	STRG.76236.14	-	45376608,45380483	45376819,45397259	0.979211
Peyers_patch_female_adult_53_years	chr3	124631214	124631243	124631242	+	RAMPAGE_only	6	6	17	1.434589	3.577820	chr3	124631189	124632228	LINE|L2|L2a	+	chr3	124584681	124650915	KALRN|ENST00000454902.1	+	124584681,124632419,124633848,124650807	124584906,124632703,124633953,124650915	0.941176
Peyers_patch_female_adult_53_years	chr1	148900909	148900938	148900909	+	RAMPAGE_only	12	14	41	3.459891	4.503056	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148889783	148932725	PDE4DIP|ENST00000612094.1	+	148889783,148929196,148932112	148889894,148931923,148932725	0.707317
Peyers_patch_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	38	38	38	3.206728	4.448861	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.605263
Peyers_patch_female_adult_53_years	chr1	89272820	89272887	89272827	-	High_confidence	5	5	38	3.206728	4.405822	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89264709	89272830	STRG.4229.1	-	89264709,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272830	0.947368
Peyers_patch_female_adult_53_years	chr6	36757385	36757400	36757399	-	High_confidence	3	3	7	0.590713	2.521641	chr6	36757386	36757542	SINE|MIR|MIRc	-	chr6	36754232	36757400	CPNE5|ENST00000634222.1	-	36754232,36757284	36756298,36757400	1.000000
Peyers_patch_female_adult_53_years	chr11	67633758	67633784	67633773	-	High_confidence	7	7	18	1.518977	3.616875	chr11	67633313	67633935	LINE|L2|L2a	+	chr11	67631302	67633847	STRG.62039.2	-	67631302,67632317,67632602,67632947	67631894,67632412,67632670,67633847	0.944444
Peyers_patch_female_adult_53_years	chr12	7111504	7111505	7111504	+	RAMPAGE_only	8	8	8	0.675101	2.750000	chr12	7111409	7111556	SINE|Alu|AluJb	+	chr12	7108570	7121027	C1RL-AS1|ENST00000382215.3	+	7108570,7110297,7111024,7112006,7115129,7118898,7119499,7120505	7108947,7110572,7111606,7112064,7115219,7119026,7119553,7121027	0.750000
Peyers_patch_female_adult_53_years	chr1	2551390	2551460	2551390	-	High_confidence	3	3	11	0.928263	3.459432	chr1	2550899	2551364	LINE|L1|L1ME2	-	chr1	2550073	2551598	TNFRSF14-AS1|ENST00000448624.2	-	2550073,2550991	2550274,2551598	1.000000
Peyers_patch_female_adult_53_years	chr14	24423297	24423298	24423297	+	High_confidence	7	7	11	0.928263	2.663533	chr14	24422287	24423820	LINE|L2|L2b	-	chr14	24423117	24437425	STRG.71986.6	+	24423117,24430713,24431462,24432721,24436387,24437035	24423476,24430931,24432610,24436179,24436489,24437425	1.000000
Peyers_patch_female_adult_53_years	chr1	176162919	176162963	176162962	-	RAMPAGE_only	6	6	20	1.687752	3.384184	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.650000
Peyers_patch_female_adult_53_years	chr1	19308848	19308879	19308878	+	RAMPAGE_only	6	6	26	2.194077	3.690260	chr1	19308829	19309159	LINE|L2|L2b	-	chr1	19288056	19329280	STRG.1013.2	+	19288056,19305210,19317599,19324632,19325494,19326244,19326530,19327226,19328571	19288360,19312889,19317841,19324762,19325582,19326387,19326623,19327412,19329280	1.000000
Peyers_patch_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	610	629	1880	158.648664	6.962917	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.675000
Peyers_patch_female_adult_53_years	chr14	92726867	92726889	92726888	-	RAMPAGE_only	6	7	10	0.843876	2.921928	chr14	92726862	92727148	LTR|ERVL-MaLR|MLT1L	+	chr14	92703821	92717459	LGMN|ENST00000555169.1	-	92703821,92716184,92717379	92704247,92716221,92717459	0.600000
Peyers_patch_female_adult_53_years	chr19	10825211	10825222	10825211	+	RAMPAGE_only	16	17	32	2.700403	3.952820	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	0.906250
Peyers_patch_female_adult_53_years	chr10	68307107	68307132	68307107	-	High_confidence	17	18	52	4.388155	4.195847	chr10	68307029	68307329	SINE|Alu|AluSx1	-	chr10	68287026	68306879	PBLD|ENST00000277795.8	-	68287026,68292009,68292128,68296885,68306760	68289019,68292039,68292238,68296985,68306879	0.846154
Peyers_patch_female_adult_53_years	chr6	118651592	118651602	118651592	-	High_confidence	6	6	10	0.843876	2.725481	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.900000
Peyers_patch_female_adult_53_years	chr13	50083114	50083133	50083132	+	High_confidence	7	9	13	1.097039	2.688722	chr13	50083020	50083238	SINE|MIR|MIRb	-	chr13	50082170	50107218	DLEU1|ENST00000469754.2	+	50082170,50083141,50104703	50082557,50083194,50107218	0.692308
Peyers_patch_female_adult_53_years	chrX	134452827	134452844	134452827	+	RAMPAGE_only	2	2	9	0.759488	3.000000	chrX	134452607	134453007	LINE|L2|L2	-	chrX	134460144	134500668	HPRT1|NM_000194.2	+	134460144,134473358,134475180,134486464,134490187,134493507,134498389,134498607,134500029	134460338,134473465,134475364,134486530,134490205,134493590,134498436,134498684,134500668	0.555556
Peyers_patch_female_adult_53_years	chr2	30737598	30737609	30737598	-	RAMPAGE_only	4	5	9	0.759488	3.169925	chr2	30737499	30737614	SINE|MIR|MIRc	+	chr2	30718029	30743518	STRG.10713.6	-	30718029,30729784,30730729,30731343,30732437,30734448,30736502,30737161,30738399,30741907,30742325,30743382	30724897,30729886,30730786,30731399,30732566,30734524,30736629,30738293,30738457,30741964,30742359,30743518	1.000000
Peyers_patch_female_adult_53_years	chr13	51080845	51080846	51080845	-	High_confidence	9	9	9	0.759488	2.725481	chr13	51078923	51080846	LINE|L1|L1PA6	-	chr13	51016107	51080862	GUCY1B2|ENST00000532104.1	-	51016107,51016915,51020397,51024099,51025333,51026701,51029593,51034002,51048219,51062820,51065950,51080706	51016327,51017064,51020718,51024316,51025437,51026813,51029693,51034159,51048314,51062894,51066157,51080862	0.888889
Peyers_patch_female_adult_53_years	chr5	32403115	32403149	32403115	-	RAMPAGE_only	3	3	12	1.012651	2.688722	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
Peyers_patch_female_adult_53_years	chr1	19344364	19344405	19344373	-	RAMPAGE_only	10	10	33	2.784790	4.101382	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
Peyers_patch_female_adult_53_years	chr2	64077102	64077119	64077116	+	High_confidence	40	44	89	7.510495	5.676639	chr2	64076874	64077368	LTR|ERV1|HERVH-int	-	chr2	64077128	64077748	STRG.11932.1	+	64077128	64077748	0.651685
Peyers_patch_female_adult_53_years	chr7	7751662	7751695	7751684	+	RAMPAGE_only	10	10	44	3.713054	4.489877	chr7	7751693	7751981	DNA|hAT-Tip100|Arthur1B	+	chr7	7772360	7879223	UMAD1|ENST00000406829.2	+	7772360,7801669,7877280	7772454,7801743,7879223	0.590909
Peyers_patch_female_adult_53_years	chr15	45441877	45441878	45441877	-	High_confidence	11	11	16	1.350201	3.280639	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45430651	45441808	AC025580.1|ENST00000559553.1	-	45430651,45433612,45441780	45430814,45434150,45441808	0.875000
Peyers_patch_female_adult_53_years	chr6	155013728	155013754	155013753	+	High_confidence	3	3	9	0.759488	2.503258	chr6	155013693	155013753	DNA|TcMar-Tigger|Tigger19a	+	chr6	155013921	155251985	TIAM2|ENST00000528535.5	+	155013921,155090288,155127489,155129217,155137176,155144605,155148109,155164414,155165262,155176815,155179038,155179377,155182225,155183236,155211203,155240529,155244010,155244657,155245622,155247999,155249850,155250912,155251944	155014016,155090379,155127600,155130417,155137612,155144778,155148334,155164600,155165409,155176977,155179143,155179456,155182318,155183500,155211307,155240709,155244079,155244783,155245731,155248179,155249969,155251021,155251985	0.777778
Peyers_patch_female_adult_53_years	chr11	123061128	123061297	123061256	-	High_confidence	52	56	235	19.831083	5.460601	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.970213
Peyers_patch_female_adult_53_years	chr6	31186398	31186568	31186398	-	High_confidence	76	80	213	17.974556	5.079377	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31181923	31186535	STRG.35671.8	-	31181923	31186535	1.000000
Peyers_patch_female_adult_53_years	chr5	142875135	142875157	142875156	+	High_confidence	3	3	7	0.590713	2.521641	chr5	142875200	142875313	SINE|MIR|MIR3	+	chr5	142874892	142919443	ARHGAP26|ENST00000475287.2	+	142874892,142879373,142885297,142894237,142901934,142903539,142907703,142913198,142919210	142875171,142879445,142885399,142894348,142902039,142903669,142907804,142913293,142919443	1.000000
Peyers_patch_female_adult_53_years	chr3	142684055	142684101	142684076	+	RAMPAGE_only	7	7	31	2.616015	4.066784	chr3	142683987	142684094	LINE|RTE-BovB|MamRTE1	+	chr3	142689629	142698438	PLS1|ENST00000483507.1	+	142689629,142694468,142697952	142689813,142694547,142698438	0.612903
Peyers_patch_female_adult_53_years	chr16	29760809	29760853	29760848	+	High_confidence	32	34	172	14.514665	5.428405	chr16	29760474	29761018	LTR|ERVL-MaLR|MLT1G1	+	chr16	29760795	29785993	STRG.80403.1	+	29760795,29779259,29779504,29780103,29784922,29785587	29760949,29779321,29779637,29781174,29785492,29785993	0.947674
Peyers_patch_female_adult_53_years	chr1	151369326	151369360	151369326	-	RAMPAGE_only	7	7	30	2.531628	3.840403	chr1	151369225	151369333	DNA|hAT-Tip100|MER91A	-	chr1	151365671	151372683	SELENBP1|ENST00000458566.5	-	151365671,151365767,151366274,151366721,151368198,151369003,151369441,151369712,151372637	151365684,151365846,151366453,151366904,151368319,151369189,151369506,151369769,151372683	0.933333
Peyers_patch_female_adult_53_years	chr8	99892036	99892057	99892056	-	RAMPAGE_only	72	72	177	14.936603	5.069538	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
Peyers_patch_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	41	41	41	3.459891	3.499483	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
Peyers_patch_female_adult_53_years	chr18	42159375	42159419	42159375	+	RAMPAGE_only	2	2	14	1.181426	3.093069	chr18	42159347	42159550	SINE|MIR|MIR3	-	chr18	42186667	42518953	LINC00907|ENST00000585627.5	+	42186667,42225963,42453931,42454906,42516118	42186762,42226107,42454098,42454989,42518953	0.642857
Peyers_patch_female_adult_53_years	chr19	51350363	51350379	51350363	-	RAMPAGE_only	4	4	13	1.097039	2.792481	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.769231
Peyers_patch_female_adult_53_years	chr11	119046561	119046604	119046603	-	RAMPAGE_only	4	5	14	1.181426	3.392747	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119044308	119048898	STRG.63998.4	-	119044308,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713	119045654,119045834,119046467,119046802,119047818,119048080,119048370,119048563,119048898	0.928571
Peyers_patch_female_adult_53_years	chr6	158303276	158303301	158303297	-	High_confidence	5	5	22	1.856527	3.356492	chr6	158303244	158303618	LTR|ERVK|MER11A	-	chr6	158299433	158303364	STRG.40153.1	-	158299433	158303364	0.818182
Peyers_patch_female_adult_53_years	chr12	4720336	4720338	4720336	+	High_confidence	12	19	25	2.109690	3.534219	chr12	4720007	4720593	LTR|ERVK|LTR14C	-	chr12	4720340	4772726	GALNT8|ENST00000252318.6	+	4720340,4726531,4739162,4744516,4745428,4746143,4760957,4763252,4763951,4765378,4772444	4720888,4726829,4739329,4744700,4745626,4746258,4761143,4763390,4764047,4765546,4772726	0.920000
Peyers_patch_female_adult_53_years	chr10	72355126	72355166	72355126	-	High_confidence	2	2	9	0.759488	2.503258	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.777778
Peyers_patch_female_adult_53_years	chr1	43525091	43525097	43525091	+	High_confidence	356	357	564	47.594599	7.149426	chr1	43524527	43525317	LINE|L2|L2c	-	chr1	43525186	43553519	PTPRF|ENST00000496043.5	+	43525186,43528656,43538197,43545030,43553491	43525257,43528756,43538277,43545166,43553519	0.742908
Peyers_patch_female_adult_53_years	chr22	39021356	39021382	39021381	+	High_confidence	3	3	9	0.759488	2.500000	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.888889
Peyers_patch_female_adult_53_years	chr1	44547523	44547524	44547523	-	High_confidence	34	34	43	3.628666	4.193252	chr1	44547206	44547886	LINE|L2|L2	+	chr1	44545022	44547515	STRG.2414.1	-	44545022,44547348	44545278,44547515	0.883721
Peyers_patch_female_adult_53_years	chr8	102929960	102930012	102929989	+	High_confidence	5	5	23	1.940915	3.558519	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.695652
Peyers_patch_female_adult_53_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	16	16	17	1.434589	3.625000	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86471490	86492712	STRG.12549.3	+	86471490,86477876,86478607,86480166,86481929,86482457,86483986,86484941,86485728,86489317,86489519,86490880,86491140,86492038	86474990,86478265,86478735,86480362,86482102,86482694,86484158,86485029,86485859,86489437,86489659,86491057,86491275,86492712	0.882353
Peyers_patch_female_adult_53_years	chr1	1655409	1655481	1655461	-	RAMPAGE_only	18	18	65	5.485193	5.391298	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.646154
Peyers_patch_female_adult_53_years	chr12	15624460	15624475	15624460	-	RAMPAGE_only	2	3	9	0.759488	2.503258	chr12	15624456	15624793	LINE|L2|L2a	+	chr12	15623219	15631762	EPS8|ENST00000545610.1	-	15623219,15624226,15631441	15623287,15624407,15631762	1.000000
Peyers_patch_female_adult_53_years	chr1	19384882	19384889	19384888	-	RAMPAGE_only	8	8	13	1.097039	3.022055	chr1	19384800	19385021	LINE|L2|L2c	+	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.923077
Peyers_patch_female_adult_53_years	chr7	100349884	100349885	100349884	+	RAMPAGE_only	14	14	15	1.265814	3.093069	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336124	100351900	STRG.44158.15	+	100336124,100338178,100338772,100345864,100349716,100351251	100336337,100338264,100338889,100345968,100349887,100351900	0.800000
Peyers_patch_female_adult_53_years	chr16	19430588	19430629	19430628	+	RAMPAGE_only	9	9	30	2.531628	3.264084	chr16	19430590	19430808	DNA|hAT-Charlie|Charlie18a	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	1.000000
Peyers_patch_female_adult_53_years	chr3	11225963	11225999	11225998	+	High_confidence	7	7	44	3.713054	4.815459	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.818182
Peyers_patch_female_adult_53_years	chr17	1102068	1102091	1102090	-	RAMPAGE_only	5	5	9	0.759488	2.947703	chr17	1102032	1102078	LINE|L2|L2c	-	chr17	1003517	1109100	ABR|NM_001092.4	-	1003517,1007164,1009678,1010728,1011845,1012687,1013104,1050049,1050536,1056034,1056997,1057969,1058744,1067076,1069968,1072613,1073624,1079329,1083519,1091664,1100636,1108933	1006169,1007312,1009784,1010863,1011985,1012797,1013164,1050181,1050634,1056109,1057102,1058045,1058867,1067242,1070090,1072754,1073677,1079390,1083627,1091850,1100735,1109100	1.000000
Peyers_patch_female_adult_53_years	chr2	85354337	85354338	85354337	-	High_confidence	9	9	14	1.181426	2.842371	chr2	85354216	85354326	SINE|MIR|MIR1_Amn	-	chr2	85349431	85354506	RETSAT|ENST00000409984.2	-	85349431,85350039,85350779,85354335	85349581,85350241,85351021,85354506	0.500000
Peyers_patch_female_adult_53_years	chr18	58088255	58088277	58088255	+	RAMPAGE_only	2	2	9	0.759488	2.503258	chr18	58087897	58088355	LTR|ERVL-MaLR|MLT1F	-	chr18	58047225	58401540	NEDD4L|NM_001144964.1	+	58047225,58165787,58245426,58248898,58252000,58315981,58322424,58323231,58324995,58328994,58330737,58333817,58335477,58341037,58341677,58342905,58349536,58350990,58357193,58364267,58365998,58367745,58370396,58373173,58383245,58385525,58387438,58389084,58390645,58391486,58396166	58047510,58165861,58245508,58248937,58252054,58316032,58322486,58323334,58325162,58329127,58330914,58333892,58335537,58341169,58341797,58343103,58349614,58351045,58357252,58364333,58366228,58367867,58370467,58373269,58383319,58385586,58387498,58389192,58390742,58391559,58401540	0.777778
Peyers_patch_female_adult_53_years	chr5	100090459	100090491	100090490	-	RAMPAGE_only	6	6	18	1.518977	2.822182	chr5	100090327	100090684	LTR|ERVL-MaLR|THE1B	-	chr5	100062274	100067954	AC092278.1|ENST00000621951.1	-	100062274,100066007,100066238,100066661,100067766	100062359,100066154,100066417,100066807,100067954	0.833333
Peyers_patch_female_adult_53_years	chr7	158863386	158863401	158863386	+	RAMPAGE_only	3	3	15	1.265814	3.056565	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.866667
Peyers_patch_female_adult_53_years	chr9	113375459	113375495	113375494	-	High_confidence	10	10	16	1.350201	3.106891	chr9	113375358	113375529	SINE|MIR|MIR3	-	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	0.937500
Peyers_patch_female_adult_53_years	chr12	100410563	100410618	100410563	+	High_confidence	42	44	205	17.299455	5.814290	chr12	100410510	100410676	SINE|Alu|AluSx1	+	chr12	100410620	100420089	SLC17A8|ENST00000552697.1	+	100410620,100412769,100418028,100419814	100410699,100412880,100418156,100420089	0.756098
Peyers_patch_female_adult_53_years	chr3	171168126	171168127	171168126	-	RAMPAGE_only	5	5	8	0.675101	2.521641	chr3	171168081	171168218	LINE|RTE-BovB|MamRTE1	+	chr3	171157550	171225711	TNIK|ENST00000468757.1	-	171157550,171161269,171167094,171175251,171177325,171188701,171190696,171194524,171211115,171225533	171157664,171161336,171167270,171175330,171177380,171188832,171190787,171194635,171211241,171225711	0.750000
Peyers_patch_female_adult_53_years	chr4	53716731	53716750	53716749	+	RAMPAGE_only	3	3	8	0.675101	2.500000	chr4	53716454	53716815	LTR|ERVL-MaLR|MLT1J	-	chr4	53695900	53734358	LOC100506444|NR_125918.1	+	53695900,53716831,53733186	53696168,53717007,53734358	0.500000
Peyers_patch_female_adult_53_years	chrX	22086214	22086239	22086214	+	RAMPAGE_only	5	5	14	1.181426	2.950212	chrX	22086029	22086733	LINE|L1|L1M3f	-	chrX	22090492	22099363	PHEX|ENST00000475778.1	+	22090492,22093982,22096954,22099005	22090497,22094099,22097038,22099363	0.857143
Peyers_patch_female_adult_53_years	chr3	170077671	170077688	170077687	+	High_confidence	2	3	8	0.675101	2.807355	chr3	170077411	170077864	LTR|ERVK|LTR22A	+	chr3	170077133	170084237	GPR160|ENST00000482710.1	+	170077133,170079773,170083904	170077416,170079897,170084237	0.750000
Peyers_patch_female_adult_53_years	chr9	111570092	111570101	111570092	-	RAMPAGE_only	9	9	19	1.603364	3.127987	chr9	111569760	111570075	LINE|L2|L2a	-	chr9	111562972	111597413	STRG.54135.6	-	111562972,111570090,111574733,111578795,111583471,111585997,111589263,111594221,111597316	111563231,111570209,111574842,111578951,111583589,111586165,111592982,111594267,111597413	0.947368
Peyers_patch_female_adult_53_years	chr22	46171511	46171548	46171542	+	RAMPAGE_only	10	10	37	3.122341	4.520000	chr22	46171297	46171902	LINE|L2|L2a	-	chr22	46176747	46235403	PPARA|ENST00000402126.1	+	46176747,46198344,46215172,46218262,46219811,46231791,46235132	46176836,46198591,46215333,46218401,46220014,46232239,46235403	0.729730
Peyers_patch_female_adult_53_years	chr11	65428036	65428612	65428512	+	RAMPAGE_only	29	29	613	51.729591	6.351174	chr11	65428531	65428593	DNA|hAT-Tip100|MamRep4096	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
Peyers_patch_female_adult_53_years	chr8	143558019	143558020	143558019	+	High_confidence	18	18	18	1.518977	3.419382	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.944444
Peyers_patch_female_adult_53_years	chr1	227322731	227322763	227322762	-	High_confidence	6	6	18	1.518977	3.337175	chr1	227322678	227322789	LTR|ERVL|LTR33A_	-	chr1	227199556	227322735	STRG.8873.12	-	227199556,227213135,227254063,227322657	227199652,227213219,227254155,227322735	0.500000
Peyers_patch_female_adult_53_years	chr9	129010458	129010486	129010485	-	RAMPAGE_only	3	3	7	0.590713	2.521641	chr9	129010444	129010507	LINE|L2|L2a	-	chr9	129007791	129012016	SH3GLB2|ENST00000479237.5	-	129007791,129009105,129009452,129009770,129010119,129010669	129008791,129009346,129009467,129009871,129010209,129012016	0.714286
Peyers_patch_female_adult_53_years	chr2	113185037	113185066	113185065	+	High_confidence	4	4	11	0.928263	2.663533	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.909091
Peyers_patch_female_adult_53_years	chr14	102947726	102947758	102947726	-	RAMPAGE_only	2	2	9	0.759488	2.500000	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102944042	102968532	CDC42BPB|ENST00000559043.1	-	102944042,102945661,102946467,102947720,102949764,102950465,102952497,102954601,102959630,102963060,102964501,102966281,102967045,102968252,102968471	102944487,102945724,102946684,102947802,102949904,102950602,102952603,102954688,102959710,102963155,102964650,102966387,102967170,102968358,102968532	0.888889
Peyers_patch_female_adult_53_years	chr10	122127024	122127025	122127024	+	High_confidence	14	14	21	1.772139	3.366091	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.761905
Peyers_patch_female_adult_53_years	chr1	247171424	247171425	247171424	-	High_confidence	17	18	22	1.856527	3.880180	chr1	247171309	247171510	LTR|ERV1|MER57E3	+	chr1	247156419	247171967	ZNF124|ENST00000543802.2	-	247156419,247159005,247159686,247171847	247157403,247159066,247159813,247171967	0.818182
Peyers_patch_female_adult_53_years	chr1	84297935	84297967	84297935	-	High_confidence	40	41	73	6.160294	4.750293	chr1	84297928	84298031	SINE|MIR|MIRc	+	chr1	84294847	84298712	STRG.4092.1	-	84294847	84298712	0.945205
Peyers_patch_female_adult_53_years	chr17	47067498	47067534	47067512	-	High_confidence	81	125	407	34.345748	5.443359	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.948403
Peyers_patch_female_adult_53_years	chr1	30039364	30039424	30039423	-	High_confidence	9	10	45	3.797441	4.325925	chr1	30039248	30039696	LTR|ERVK|LTR22A	-	chr1	30012363	30039432	STRG.1462.1	-	30012363,30016719,30025024,30029289,30039174	30015295,30016921,30025183,30029490,30039432	0.844444
Peyers_patch_female_adult_53_years	chr2	230925241	230925265	230925241	-	High_confidence	2	2	8	0.675101	2.500000	chr2	230925193	230925329	SINE|MIR|MIR3	+	chr2	230907317	230925226	GPR55|ENST00000444078.5	-	230907317,230909621,230925167	230908310,230911096,230925226	1.000000
Peyers_patch_female_adult_53_years	chr19	5847491	5847519	5847518	+	High_confidence	7	7	16	1.350201	3.006239	chr19	5847388	5847625	LTR|ERV1|LTR7B	+	chr19	5847466	5858239	AC024592.2|ENST00000589276.1	+	5847466,5852503,5854570,5857615	5847768,5852673,5854662,5858239	0.812500
Peyers_patch_female_adult_53_years	chr17	27551959	27551987	27551966	-	High_confidence	37	37	130	10.970386	5.650430	chr17	27551728	27552347	LINE|L2|L2a	+	chr17	27537766	27551993	STRG.83206.1	-	27537766,27551886	27543973,27551993	0.638462
Peyers_patch_female_adult_53_years	chr19	55333969	55333975	55333974	-	High_confidence	4	5	8	0.675101	2.521641	chr19	55333705	55334001	LINE|L1|L1MB5	-	chr19	55319463	55334048	TMEM150B|ENST00000592891.1	-	55319463,55320390,55320557,55320968,55322647,55333903	55320166,55320458,55320617,55321093,55322743,55334048	0.625000
Peyers_patch_female_adult_53_years	chr7	150323668	150323751	150323728	-	High_confidence	26	26	178	15.020991	5.345739	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	0.966292
Peyers_patch_female_adult_53_years	chr2	229232040	229232043	229232042	-	High_confidence	6	9	14	1.181426	3.093069	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.928571
Peyers_patch_female_adult_53_years	chr11	68773414	68773415	68773414	-	RAMPAGE_only	18	18	22	1.856527	3.368042	chr11	68773373	68773449	LINE|CR1|L3	+	chr11	68754619	68815503	CPT1A|ENST00000540367.5	-	68754619,68759568,68760224,68761534,68762626,68773264,68775315,68780639,68781770,68784814,68793314,68794803,68796855,68799217,68803999,68807466,68812436,68815333	68754851,68759661,68760338,68761687,68762761,68773429,68775432,68780745,68781959,68785010,68793402,68794911,68796933,68799355,68804101,68807638,68812576,68815503	0.636364
Peyers_patch_female_adult_53_years	chr11	58578102	58578133	58578102	-	High_confidence	90	96	193	16.286804	5.602519	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58543897	58578116	STRG.61417.3	-	58543897,58549972,58554840,58564154,58570555,58577985	58549867,58551232,58554940,58564201,58570713,58578116	0.896373
Peyers_patch_female_adult_53_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	11	12	14	1.181426	2.873141	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.928571
Peyers_patch_female_adult_53_years	chr12	123390743	123390774	123390760	+	High_confidence	5	6	23	1.940915	3.795089	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	1.000000
Peyers_patch_female_adult_53_years	chrX	118727148	118727169	118727168	+	High_confidence	6	6	18	1.518977	3.308271	chrX	118727146	118727201	SINE|MIR|MIRc	-	chrX	118727571	118794539	IL13RA1|ENST00000371666.7	+	118727571,118741016,118746953,118749657,118758054,118761137,118766529,118766843,118773878,118776426,118791761	118727726,118741156,118747092,118749778,118758242,118761289,118766577,118766976,118773975,118776511,118794539	0.666667
Peyers_patch_female_adult_53_years	chr1	227142954	227142957	227142956	-	RAMPAGE_only	5	7	9	0.759488	3.169925	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989865	227254155	STRG.8873.4	-	226989865,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227112670,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227051985,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227112913,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155	0.888889
Peyers_patch_female_adult_53_years	chr14	68167028	68167062	68167028	-	High_confidence	3	4	13	1.097039	2.855389	chr14	68166677	68167265	LINE|L2|L2	+	chr14	68166444	68167450	STRG.73321.2	-	68166444,68167189	68167065,68167450	0.615385
Peyers_patch_female_adult_53_years	chrX	2964515	2964566	2964565	-	High_confidence	4	4	18	1.518977	3.239098	chrX	2964489	2964607	SINE|Alu|AluJb	-	chrX	2934631	2964453	ARSE|NM_001282628.1	-	2934631,2936741,2938094,2943064,2945997,2949303,2953142,2955415,2958273,2959602,2960377,2964223	2935190,2936863,2938257,2943199,2946134,2949727,2953265,2955537,2958435,2959888,2960420,2964453	1.000000
Peyers_patch_female_adult_53_years	chr11	57793932	57794022	57793995	+	RAMPAGE_only	30	31	115	9.704573	5.598958	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.782609
Peyers_patch_female_adult_53_years	chr12	127060613	127060614	127060613	+	High_confidence	23	31	33	2.784790	4.211630	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060514	127146991	STRG.69309.1	+	127060514,127119553,127145711	127061334,127119678,127146991	0.939394
Peyers_patch_female_adult_53_years	chr11	67886471	67886535	67886471	+	High_confidence	44	47	154	12.995688	5.405751	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.811688
Peyers_patch_female_adult_53_years	chr9	17014075	17014080	17014075	+	High_confidence	10	12	27	2.278465	4.078419	chr9	17013826	17014266	LTR|ERVL|MLT2B1	+	chr9	17014088	17052058	STRG.51354.1	+	17014088,17020241,17048052,17048918	17014221,17020316,17048092,17052058	0.555556
Peyers_patch_female_adult_53_years	chr16	2524767	2524776	2524767	+	RAMPAGE_only	6	8	15	1.265814	3.182006	chr16	2524623	2524807	LINE|L1|HAL1	-	chr16	2527569	2528495	AMDHD2|ENST00000570028.5	+	2527569,2528059,2528235,2528451	2527985,2528148,2528380,2528495	0.866667
Peyers_patch_female_adult_53_years	chr19	49086520	49086547	49086546	+	High_confidence	31	32	97	8.185596	5.017799	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.958763
Peyers_patch_female_adult_53_years	chr20	44448247	44448250	44448247	+	High_confidence	16	19	30	2.531628	4.506891	chr20	44447665	44448368	LINE|L2|L2b	-	chr20	44448258	44448881	STRG.92978.1	+	44448258	44448881	0.900000
Peyers_patch_female_adult_53_years	chr21	39657331	39657337	39657331	+	RAMPAGE_only	17	18	34	2.869178	3.973513	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39642361	39662888	STRG.94641.6	+	39642361,39660559	39659912,39662888	1.000000
Peyers_patch_female_adult_53_years	chr3	185959699	185959748	185959745	+	High_confidence	4	4	16	1.350201	3.375000	chr3	185959492	185959826	SINE|Alu|AluSq2	+	chr3	185959961	185975198	NMRAL2P|ENST00000422108.5	+	185959961,185968478,185971614,185975165	185960078,185968649,185971864,185975198	0.500000
Peyers_patch_female_adult_53_years	chr12	57050719	57050720	57050719	-	High_confidence	221	268	283	23.881687	6.126320	chr12	57050705	57050920	SINE|MIR|MIRc	-	chr12	57028516	57050765	MYO1A|NM_001256041.1	-	57028516,57029131,57029434,57029739,57030209,57031039,57036306,57036771,57036941,57037547,57037868,57038411,57038808,57039211,57041183,57041431,57043071,57043239,57043855,57044105,57046551,57046862,57047060,57047302,57047626,57047988,57048209,57049886,57050717	57028881,57029259,57029587,57029872,57030316,57031174,57036381,57036840,57037091,57037641,57038069,57038638,57039009,57039274,57041288,57041497,57043158,57043358,57044003,57044209,57046650,57046926,57047107,57047407,57047721,57048104,57048343,57050106,57050765	0.766784
Peyers_patch_female_adult_53_years	chr17	4143199	4143215	4143199	+	High_confidence	15	15	27	2.278465	4.430632	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.962963
Peyers_patch_female_adult_53_years	chrX	65225624	65225648	65225647	+	RAMPAGE_only	5	5	18	1.518977	3.086049	chrX	65224382	65230547	LINE|L1|L1PA3	+	chrX	65222654	65234531	STRG.98527.1	+	65222654	65234531	1.000000
Peyers_patch_female_adult_53_years	chr19	15681684	15681722	15681684	+	High_confidence	3	3	21	1.772139	3.975418	chr19	15681355	15681801	LTR|ERVL|LTR40c	-	chr19	15681500	15697143	CYP4F12|ENST00000546608.1	+	15681500,15683492,15685067,15695935,15696160,15696907	15682514,15684882,15685197,15696069,15696512,15697143	1.000000
Peyers_patch_female_adult_53_years	chr17	69314662	69314663	69314662	-	High_confidence	13	13	13	1.097039	2.777363	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	0.846154
Peyers_patch_female_adult_53_years	chr9	128684459	128684485	128684459	-	High_confidence	6	6	48	4.050604	4.599875	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128680495	128684687	STRG.54765.1	-	128680495	128684687	0.895833
Peyers_patch_female_adult_53_years	chr1	111192159	111192190	111192159	-	RAMPAGE_only	2	2	7	0.590713	2.521641	chr1	111191905	111192139	SINE|MIR|MIRb	-	chr1	111187173	111189328	DENND2D|ENST00000468692.1	-	111187173,111188130,111188701,111189211	111187681,111188370,111188786,111189328	1.000000
Peyers_patch_female_adult_53_years	chr10	5023239	5023307	5023239	-	High_confidence	92	93	414	34.936461	6.289637	chr10	5023105	5023345	LTR|ERVL-MaLR|MLT1F2	-	chr10	4984389	5023356	STRG.55283.1	-	4984389,4991830,4995318,4995755,4998624,4999199,5000549,5001513,5003751,5007406,5023058	4990038,4991913,4995484,4995865,4998747,4999277,5000666,5001681,5006592,5007506,5023356	0.632850
Peyers_patch_female_adult_53_years	chr17	42136452	42136478	42136459	-	High_confidence	3	4	19	1.603364	3.725481	chr17	42136440	42136680	SINE|MIR|MIRb	+	chr17	42128691	42136484	RAB5C|ENST00000550504.5	-	42128691,42130336,42136264	42128800,42130590,42136484	0.736842
Peyers_patch_female_adult_53_years	chr8	100303406	100303407	100303406	-	High_confidence	10	10	10	0.843876	2.721928	chr8	100303086	100303537	LTR|ERVL-MaLR|MLT1D	-	chr8	100257058	100303259	RNF19A|NM_015435.4	-	100257058,100259853,100261541,100264033,100264670,100268784,100269868,100274952,100287500,100300527,100303159	100259246,100259997,100261755,100264195,100264785,100268947,100270013,100275161,100288267,100300651,100303259	0.700000
Peyers_patch_female_adult_53_years	chr22	35070848	35070849	35070848	-	High_confidence	11	11	12	1.012651	2.550341	chr22	35070825	35071034	DNA|hAT-Charlie|MER58A	-	chr22	35070571	35071522	STRG.95910.1	-	35070571,35071349	35070845,35071522	0.500000
Peyers_patch_female_adult_53_years	chr11	123060124	123060219	123060124	-	High_confidence	19	20	160	13.502014	5.077467	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	0.987500
Peyers_patch_female_adult_53_years	chr18	46087034	46087066	46087042	-	High_confidence	7	7	16	1.350201	3.139572	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.875000
Peyers_patch_female_adult_53_years	chr16	2669533	2669540	2669533	-	RAMPAGE_only	2	2	7	0.590713	2.584963	chr16	2668787	2669524	LTR|ERVK|HERVK13-int	-	chr16	2660349	2673428	STRG.78987.11	-	2660349,2672706,2673282	2672570,2672859,2673428	0.857143
Peyers_patch_female_adult_53_years	chr19	8052297	8052318	8052300	+	High_confidence	6	7	22	1.856527	3.503998	chr19	8052134	8052319	LINE|L1|L1MB7	-	chr19	8052761	8062663	CCL25|NM_001201359.1	+	8052761,8052999,8056151,8056365,8057803,8062217	8052822,8053122,8056269,8056499,8057920,8062663	0.954545
Peyers_patch_female_adult_53_years	chr1	120609335	120609364	120609363	-	RAMPAGE_only	7	8	23	1.940915	3.970573	chr1	120609331	120609453	SINE|MIR|MIR3	+	chr1	120489859	120701289	AC241952.1|ENST00000612480.2	-	120489859,120491581,120491934,120493157,120494233,120495029,120497181,120501109,120501927,120503599,120504381,120505710,120509484,120511665,120512469,120513765,120514824,120516823,120518529,120519217,120520233,120523893,120530295,120536310,120538322,120538570,120541891,120543005,120543946,120544266,120545280,120548288,120548640,120548972,120550144,120573071,120578705,120579070,120620354,120641607,120646872,120701056	120489916,120491628,120492073,120493301,120494460,120495146,120497421,120501234,120502117,120503719,120504513,120505962,120509670,120511818,120512693,120513817,120515060,120517352,120518649,120519410,120520669,120524126,120530384,120536402,120538404,120538735,120542078,120543196,120544084,120544380,120545439,120548501,120548733,120549092,120550276,120573189,120578881,120579194,120620465,120641759,120646928,120701289	0.869565
Peyers_patch_female_adult_53_years	chr9	76609027	76609132	76609052	+	RAMPAGE_only	8	8	72	6.075906	4.990864	chr9	76608739	76609168	LTR|ERVL-MaLR|MLT1F2	+	chr9	76459229	76659714	STRG.52912.1	+	76459229,76500915,76502238,76515527,76516513,76527815,76564377,76565688,76605849,76606857,76642193,76644717,76649952	76459305,76501061,76503756,76515669,76516776,76527895,76564612,76565815,76605991,76609342,76642678,76644979,76659714	0.500000
Peyers_patch_female_adult_53_years	chr2	20106872	20106882	20106872	-	High_confidence	2	2	8	0.675101	2.521641	chr2	20105981	20107080	LTR|ERV1|LTR12D	-	chr2	20063855	20106829	AC098828.3|ENST00000430429.1	-	20063855,20106739	20064511,20106829	0.500000
Peyers_patch_female_adult_53_years	chr1	203429182	203429251	203429250	-	High_confidence	135	146	319	26.919640	6.720866	chr1	203429152	203429582	LTR|ERVK|LTR22A	-	chr1	203421372	203429280	STRG.7912.1	-	203421372	203429280	0.968652
Peyers_patch_female_adult_53_years	chr12	109053947	109053984	109053956	-	High_confidence	8	12	28	2.362852	3.844107	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.535714
Peyers_patch_female_adult_53_years	chr10	133370016	133370017	133370016	-	RAMPAGE_only	7	9	11	0.928263	2.913977	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
Peyers_patch_female_adult_53_years	chr14	106844864	106844904	106844864	+	High_confidence	2	4	17	1.434589	3.969816	chr14	106836775	106845293	LTR|ERV1|HERV3-int	-	chr14	106844873	106845523	STRG.75140.1	+	106844873	106845523	0.588235
Peyers_patch_female_adult_53_years	chr19	35115804	35115880	35115844	+	High_confidence	92	98	631	53.248568	7.395272	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_021910.2	+	35115827,35116263,35119167,35119362,35121077,35121221,35122764,35123270,35123440	35115959,35116359,35119251,35119416,35121110,35121245,35122954,35123308,35124324	0.678288
Peyers_patch_female_adult_53_years	chr1	155304810	155304822	155304821	+	High_confidence	15	21	58	4.894480	4.985064	chr1	155304792	155304940	SINE|MIR|MIRb	-	chr1	155305756	155307191	STRG.6030.1	+	155305756	155307191	0.827586
Peyers_patch_female_adult_53_years	chr2	38083039	38083063	38083051	+	High_confidence	8	8	25	2.109690	3.733661	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.720000
Peyers_patch_female_adult_53_years	chr9	73080369	73080370	73080369	-	High_confidence	9	9	9	0.759488	2.947703	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	1.000000
Peyers_patch_female_adult_53_years	chr10	4678146	4678195	4678146	-	High_confidence	7	7	19	1.603364	2.925853	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.842105
Peyers_patch_female_adult_53_years	chr7	7566514	7566528	7566527	-	High_confidence	10	11	22	1.856527	4.004886	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.590909
Peyers_patch_female_adult_53_years	chr3	33838246	33838293	33838246	+	RAMPAGE_only	4	4	17	1.434589	3.202820	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.647059
Peyers_patch_female_adult_53_years	chr22	35311050	35311077	35311050	+	High_confidence	2	2	11	0.928263	2.921928	chr22	35310706	35311148	LINE|L2|L2c	-	chr22	35311061	35323819	TOM1|ENST00000443206.2	+	35311061,35317876,35321958,35323027,35323495,35323767	35311127,35317961,35322037,35323177,35323630,35323819	0.909091
Peyers_patch_female_adult_53_years	chr14	103529027	103529095	103529027	-	High_confidence	5	5	45	3.797441	3.672068	chr14	103528849	103528983	SINE|Alu|AluJo	-	chr14	103525009	103529072	AL133367.1|ENST00000568177.1	-	103525009	103529072	0.866667
Peyers_patch_female_adult_53_years	chr8	27977125	27977126	27977125	-	High_confidence	15	15	21	1.772139	3.536887	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27869885	27977116	STRG.47551.2	-	27869885,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977116	0.857143
Peyers_patch_female_adult_53_years	chr22	38099039	38099092	38099039	-	RAMPAGE_only	4	4	13	1.097039	3.251629	chr22	38098978	38099043	LINE|L2|L2b	+	chr22	38084902	38110645	BAIAP2L2|ENST00000332536.9	-	38084902,38085685,38086241,38086389,38087123,38088747,38089095,38089521,38097031,38098062,38098410,38107851,38108254,38109132,38110474	38085375,38085732,38086347,38086449,38087264,38088964,38089231,38089674,38097178,38098179,38098482,38107913,38108341,38109208,38110645	0.538462
Peyers_patch_female_adult_53_years	chr12	109069823	109069835	109069834	+	RAMPAGE_only	8	9	16	1.350201	3.625000	chr12	109069527	109070326	LINE|L2|L2a	-	chr12	109067593	109081628	USP30|ENST00000467307.1	+	109067593,109071611,109072304,109073437,109081333	109067627,109071710,109072350,109073532,109081628	0.812500
Peyers_patch_female_adult_53_years	chr15	67063942	67063981	67063942	+	High_confidence	3	3	17	1.434589	3.734522	chr15	67063857	67064075	SINE|MIR|MIRb	+	chr15	67063911	67181420	STRG.77396.5	+	67063911,67164894,67165252,67166778,67170553,67181240	67064182,67165088,67165384,67166853,67170604,67181420	0.705882
Peyers_patch_female_adult_53_years	chr19	44725180	44725187	44725180	-	High_confidence	19	19	68	5.738356	4.840018	chr19	44725104	44725160	SINE|MIR|MIR1_Amn	-	chr19	44632030	44725199	STRG.90372.1	-	44632030,44699083,44724836	44632619,44699177,44725199	0.779412
Peyers_patch_female_adult_53_years	chr11	36453911	36453946	36453911	+	RAMPAGE_only	3	3	14	1.181426	3.039149	chr11	36453570	36453996	LINE|L2|L2b	-	chr11	36445887	36468612	STRG.61151.13	+	36445887,36451208	36446440,36468612	1.000000
Peyers_patch_female_adult_53_years	chr18	7946875	7946898	7946878	+	High_confidence	22	22	85	7.172945	5.135689	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.882353
Peyers_patch_female_adult_53_years	chr7	11194703	11194709	11194708	+	RAMPAGE_only	13	13	22	1.856527	3.572624	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.681818
Peyers_patch_female_adult_53_years	chr17	1115390	1115409	1115408	-	High_confidence	10	10	26	2.194077	3.363713	chr17	1115307	1115433	LINE|L2|L2b	+	chr17	1072732	1115436	ABR|ENST00000570441.5	-	1072732,1073624,1079329,1083519,1091664,1100636,1115275	1072754,1073677,1079390,1083627,1091850,1100735,1115436	0.961538
Peyers_patch_female_adult_53_years	chr11	58578011	58578012	58578011	-	High_confidence	13	13	13	1.097039	3.180833	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578116	STRG.61417.2	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58577985	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578116	0.538462
Peyers_patch_female_adult_53_years	chr4	69848723	69848738	69848723	-	High_confidence	3	3	10	0.843876	2.921928	chr4	69848650	69848745	SINE|tRNA-RTE|MamSINE1	+	chr4	69810779	69847786	AC108941.2|ENST00000506796.5	-	69810779,69838447,69841430,69841989,69844160,69847697	69810867,69838572,69841546,69842106,69844341,69847786	0.500000
Peyers_patch_female_adult_53_years	chr6	12261109	12261139	12261138	+	High_confidence	9	9	29	2.447240	3.814372	chr6	12260893	12261158	LINE|L1|L1M5	+	chr6	12261034	12262515	STRG.34824.1	+	12261034	12262515	0.862069
Peyers_patch_female_adult_53_years	chr6	158572536	158572554	158572536	+	High_confidence	5	5	13	1.097039	3.188722	chr6	158572502	158572647	DNA|hAT-Charlie|MER58B	+	chr6	158573099	158614754	STRG.40164.4	+	158573099,158580939,158583953,158585303,158589671,158605266,158608332	158573523,158580995,158584044,158585425,158589782,158607343,158614754	0.615385
Peyers_patch_female_adult_53_years	chr1	59295909	59295928	59295909	+	High_confidence	11	11	20	1.687752	3.576618	chr1	59295878	59295975	SINE|MIR|MIR3	+	chr1	59296854	59346369	FGGY|ENST00000462744.5	+	59296854,59321535,59331842,59339957,59346246	59296907,59321750,59332032,59340069,59346369	0.550000
Peyers_patch_female_adult_53_years	chr19	17336685	17336686	17336685	+	High_confidence	17	17	17	1.434589	3.381580	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.823529
Peyers_patch_female_adult_53_years	chr13	60410080	60410081	60410080	+	RAMPAGE_only	8	9	12	1.012651	2.522055	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60397830	60573864	TDRD3|ENST00000648252.1	+	60397830,60400255,60402717,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573615	60398631,60400292,60402815,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573864	1.000000
Peyers_patch_female_adult_53_years	chr1	195722378	195722382	195722381	-	High_confidence	142	142	276	23.290974	5.502756	chr1	195721970	195723453	LTR|ERV1|LTR12C	-	chr1	195690386	195722377	STRG.7624.1	-	195690386,195721819	195690765,195722377	0.945652
Peyers_patch_female_adult_53_years	chr15	88635654	88635661	88635654	+	High_confidence	8	8	20	1.687752	3.326360	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.650000
Peyers_patch_female_adult_53_years	chr10	5023121	5023155	5023154	-	RAMPAGE_only	3	3	9	0.759488	2.500000	chr10	5023105	5023345	LTR|ERVL-MaLR|MLT1F2	-	chr10	5006461	5017934	AKR1C2|ENST00000604711.1	-	5006461,5007406,5010343,5017899	5006592,5007506,5010653,5017934	0.666667
Peyers_patch_female_adult_53_years	chr7	12497207	12497208	12497207	+	High_confidence	5	5	8	0.675101	2.750000	chr7	12497211	12500000	LINE|L1|L1HS	+	chr7	12496428	12541135	LOC102725191|NR_136261.1	+	12496428,12525819,12528901,12531012,12538309,12540919	12496639,12525904,12529044,12531092,12538456,12541135	0.625000
Peyers_patch_female_adult_53_years	chr14	81427421	81427462	81427421	-	High_confidence	5	5	17	1.434589	3.500000	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.823529
Peyers_patch_female_adult_53_years	chr20	1467679	1467736	1467699	-	High_confidence	6	7	30	2.531628	4.215061	chr20	1467673	1468159	LTR|ERV1|LTR10B	+	chr20	1442161	1467692	NSFL1C|ENST00000216879.8	-	1442161,1445665,1452492,1453030,1454212,1454966,1458199,1464328,1466719	1443911,1445830,1452630,1453140,1454305,1455132,1458274,1464426,1467692	0.966667
Peyers_patch_female_adult_53_years	chr16	2205826	2205916	2205826	+	High_confidence	5	5	29	2.447240	4.047299	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	1.000000
Peyers_patch_female_adult_53_years	chr3	124938154	124938155	124938154	-	RAMPAGE_only	24	24	24	2.025302	3.403107	chr3	124938000	124938162	LTR|ERVL|LTR79	+	chr3	124905441	124934751	MUC13|ENST00000616727.4	-	124905441,124908146,124910414,124912103,124913110,124913561,124916316,124920233,124922196,124923526,124927531,124934660	124906742,124908348,124910499,124912141,124913240,124913681,124916480,124920289,124922303,124923649,124927993,124934751	1.000000
Peyers_patch_female_adult_53_years	chr11	65367381	65367438	65367437	+	High_confidence	14	15	29	2.447240	3.835516	chr11	65367362	65367667	SINE|Alu|AluY	-	chr11	65367437	65375299	AP000944.1|ENST00000533886.1	+	65367437,65367926,65375230	65367815,65368043,65375299	0.965517
Peyers_patch_female_adult_53_years	chr15	76576984	76577013	76576984	-	High_confidence	2	3	14	1.181426	2.664498	chr15	76576480	76577164	LINE|L1|L1MA3	+	chr15	76471261	76576985	SCAPER|ENST00000569784.1	-	76471261,76504858,76567269,76574157,76576858	76471335,76504974,76567405,76574284,76576985	0.857143
Peyers_patch_female_adult_53_years	chr5	39448700	39448713	39448700	-	RAMPAGE_only	71	103	234	19.746695	5.745996	chr5	39448488	39449045	LTR|ERVL|MLT2B3	-	chr5	39393257	39462300	DAB2|ENST00000511792.5	-	39393257,39394229,39462077	39393393,39394421,39462300	0.726496
Peyers_patch_female_adult_53_years	chr1	205512316	205512317	205512316	+	RAMPAGE_only	6	6	8	0.675101	2.750000	chr1	205512088	205512401	LINE|L2|L2	-	chr1	205504801	205527825	CDK18|ENST00000419301.1	+	205504801,205523146,205523482,205524231,205525138,205526064,205526366,205526774,205527793	205504878,205523297,205523715,205524357,205525195,205526179,205526461,205526837,205527825	0.625000
Peyers_patch_female_adult_53_years	chr11	65181205	65181298	65181222	+	High_confidence	5	5	32	2.700403	4.123231	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.937500
Peyers_patch_female_adult_53_years	chr10	94683469	94683508	94683483	+	High_confidence	10	10	47	3.966217	4.605032	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_001128925.1	+	94683493,94687769,94688124,94694916,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94720537,94724533,94733438,94736190	1.000000
Peyers_patch_female_adult_53_years	chr1	145687816	145687835	145687816	-	RAMPAGE_only	2	3	9	0.759488	2.500000	chr1	145687814	145687888	DNA|hAT-Ac|OldhAT1	-	chr1	145670984	145691802	PDZK1|ENST00000344770.6	-	145670984,145672729,145673656,145678448,145680911,145682499,145686476,145687811,145691731	145671489,145673020,145673881,145678645,145681107,145682636,145686726,145688023,145691802	0.888889
Peyers_patch_female_adult_53_years	chr17	28234030	28234043	28234030	-	RAMPAGE_only	6	6	10	0.843876	2.646439	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	1.000000
Peyers_patch_female_adult_53_years	chr6	87213699	87213757	87213718	+	High_confidence	4	8	27	2.278465	4.208410	chr6	87213283	87213856	LTR|ERV1|LTR10A	-	chr6	87213713	87222904	ZNF292|ENST00000524067.5	+	87213713,87214997,87215902,87216298,87218595,87222769	87213865,87215142,87216057,87216377,87218731,87222904	0.555556
Peyers_patch_female_adult_53_years	chr11	64266365	64266394	64266365	+	RAMPAGE_only	2	2	7	0.590713	2.521641	chr11	64266346	64266492	DNA|hAT-Ac|OldhAT1	+	chr11	64251574	64267923	PLCB3|ENST00000325234.5	+	64251574,64254951,64255233,64255395,64255540,64255720,64256375,64256617,64258472,64258884,64259057,64260028,64261399,64261580,64261951,64262406,64262646,64263497,64263690,64264020,64264950,64265191,64265309,64265885,64266125,64266314,64266494,64267184,64267352	64251748,64255038,64255313,64255449,64255616,64255821,64256542,64256764,64258713,64258969,64259244,64260234,64261496,64261665,64262076,64262561,64262808,64263597,64263795,64264112,64265104,64265227,64265502,64266039,64266202,64266404,64266552,64267271,64267923	0.857143
Peyers_patch_female_adult_53_years	chr21	28048446	28048447	28048446	+	High_confidence	7	7	7	0.590713	2.521641	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.571429
Peyers_patch_female_adult_53_years	chr8	12522253	12522274	12522253	+	RAMPAGE_only	9	9	23	1.940915	3.754442	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12560728	12573682	STRG.47184.5	+	12560728	12573682	0.826087
Peyers_patch_female_adult_53_years	chr3	197299316	197299321	197299316	-	High_confidence	2	3	7	0.590713	2.584963	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.571429
Peyers_patch_female_adult_53_years	chr4	118265834	118265845	118265841	-	RAMPAGE_only	4	4	12	1.012651	2.913977	chr4	118265367	118266730	LTR|ERV1|LTR12C	+	chr4	118203263	118297288	STRG.27187.2	-	118203263,118251568,118258975,118282830,118294938,118295777	118204282,118251687,118259075,118283111,118295061,118297288	0.583333
Peyers_patch_female_adult_53_years	chr15	75347033	75347043	75347037	+	High_confidence	12	12	50	4.219379	4.543834	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.660000
Peyers_patch_female_adult_53_years	chr17	16203419	16203446	16203419	-	RAMPAGE_only	5	5	16	1.350201	3.500000	chr17	16203099	16203668	LINE|L2|L2a	+	chr17	16030093	16194639	NCOR1|NM_001190440.1	-	16030093,16034764,16039432,16040440,16046950,16048844,16057513,16057906,16058470,16061757,16062104,16064067,16064869,16065484,16067893,16070164,16071408,16072144,16073428,16075533,16079963,16080407,16080606,16086281,16091862,16098366,16101249,16108785,16117887,16119422,16121051,16126081,16137310,16138157,16139007,16143605,16146375,16149450,16151945,16153338,16158759,16164978,16171802,16186553,16194461	16032483,16034944,16039654,16040494,16047093,16048988,16057737,16058064,16058599,16061894,16062270,16064187,16065019,16065694,16068121,16070525,16071665,16072228,16073569,16075702,16080064,16080509,16080727,16086442,16092058,16098496,16101805,16108912,16118027,16119485,16121269,16126206,16137412,16138212,16139186,16143696,16146548,16149517,16151998,16153395,16158873,16165161,16171995,16186687,16194639	0.625000
Peyers_patch_female_adult_53_years	chr14	24436006	24436007	24436006	+	High_confidence	4	4	7	0.590713	2.584963	chr14	24435906	24436044	LINE|L1|L1PB4	-	chr14	24435456	24438408	KHNYN|ENST00000556255.1	+	24435456,24436387,24437035	24436179,24436489,24438408	0.857143
Peyers_patch_female_adult_53_years	chr10	94773796	94773830	94773796	+	High_confidence	5	5	20	1.687752	2.708695	chr10	94773460	94774155	LTR|ERV1|LTR12	-	chr10	94773836	94853164	CYP2C19|ENST00000645461.1	+	94773836,94775389,94780498,94781820,94842836,94849916,94852732	94775220,94775539,94780659,94781997,94843024,94850058,94853164	1.000000
Peyers_patch_female_adult_53_years	chr11	114651543	114651544	114651543	-	High_confidence	99	101	101	8.523146	3.237160	chr11	114651116	114651893	LTR|ERV1|LTR12	-	chr11	114651140	114651530	STRG.63821.1	-	114651140	114651530	0.940594
Peyers_patch_female_adult_53_years	chr9	39810023	39810034	39810033	-	High_confidence	15	15	25	2.109690	4.323856	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.560000
Peyers_patch_female_adult_53_years	chr4	81153824	81153856	81153824	-	High_confidence	4	4	16	1.350201	3.375000	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81087369	81153732	PRKG2|ENST00000545647.5	-	81087369,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153429,81153643	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153555,81153732	0.875000
Peyers_patch_female_adult_53_years	chr1	100268235	100268281	100268280	+	RAMPAGE_only	19	19	33	2.784790	3.569549	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100270265	100292769	STRG.4676.4	+	100270265,100273393,100275598,100277257,100285227,100287098,100291402	100270680,100274965,100275723,100277316,100285322,100287203,100292769	0.969697
Peyers_patch_female_adult_53_years	chr14	106845738	106845817	106845738	+	High_confidence	8	9	48	4.050604	4.886842	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106845575	106847696	STRG.75141.1	+	106845575	106847696	0.583333
Peyers_patch_female_adult_53_years	chr10	30999506	30999528	30999506	-	High_confidence	3	3	9	0.759488	2.725481	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.555556
Peyers_patch_female_adult_53_years	chr16	4669251	4669252	4669251	+	High_confidence	6	6	8	0.675101	2.500000	chr16	4669151	4669448	SINE|Alu|AluSz	+	chr16	4669120	4681580	MGRN1|ENST00000591673.1	+	4669120,4671390,4673497,4677462,4680031,4681549	4669252,4671459,4673657,4677572,4680097,4681580	0.750000
Peyers_patch_female_adult_53_years	chr3	187021850	187021852	187021851	+	High_confidence	7	13	13	1.097039	3.238901	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021854	187042839	ST6GAL1|ENST00000440338.5	+	187021854,187038391,187038741,187042653	187022004,187038491,187038873,187042839	0.615385
Peyers_patch_female_adult_53_years	chr6	113873326	113873347	113873326	-	High_confidence	82	87	451	38.058802	5.515772	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.937916
Peyers_patch_female_adult_53_years	chr11	287295	287315	287314	+	High_confidence	11	13	27	2.278465	4.384517	chr11	287048	287379	LINE|L2|L2a	-	chr11	288037	288987	AC136475.3|ENST00000534742.1	+	288037,288949	288811,288987	0.851852
Peyers_patch_female_adult_53_years	chrX	136639641	136639662	136639661	+	High_confidence	5	5	9	0.759488	2.503258	chrX	136639709	136639834	SINE|MIR|MIR3	+	chrX	136639666	136642426	LINC00892|ENST00000429841.1	+	136639666,136640773,136642102	136639804,136640840,136642426	0.555556
Peyers_patch_female_adult_53_years	chr14	81192654	81192661	81192654	-	RAMPAGE_only	6	6	10	0.843876	2.721928	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	1.000000
Peyers_patch_female_adult_53_years	chr1	59029885	59029941	59029885	-	High_confidence	9	9	24	2.025302	3.882045	chr1	59029799	59029983	SINE|MIR|MIRc	+	chr1	59011710	59029952	STRG.3219.1	-	59011710,59012905,59029695	59012049,59012977,59029952	0.500000
Peyers_patch_female_adult_53_years	chr20	37345083	37345131	37345126	+	High_confidence	24	25	99	8.354371	5.572476	chr20	37345047	37345146	SINE|MIR|MIR3	+	chr20	37344703	37405432	STRG.92837.2	+	37344703,37345048,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37345229,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.636364
Peyers_patch_female_adult_53_years	chr12	6493551	6493554	6493553	-	High_confidence	3	5	8	0.675101	2.521641	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	0.875000
Peyers_patch_female_adult_53_years	chr7	128648860	128648861	128648860	+	High_confidence	5	5	7	0.590713	2.521641	chr7	128648764	128648951	SINE|Alu|AluJb	-	chr7	128648158	128653243	STRG.45548.8	+	128648158,128651037,128651188	128648982,128651095,128653243	0.857143
Peyers_patch_female_adult_53_years	chr7	103152897	103152901	103152898	+	High_confidence	63	72	121	10.210898	5.974418	chr7	103152807	103153195	LTR|ERV1|HERVE_a-int	+	chr7	103151939	103234855	STRG.44317.1	+	103151939,103194976	103153073,103234855	0.867769
Peyers_patch_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	108	151	287	24.219238	4.537383	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.961672
Peyers_patch_female_adult_53_years	chr1	23417917	23417918	23417917	-	RAMPAGE_only	13	13	19	1.603364	3.725481	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.947368
Peyers_patch_female_adult_53_years	chr1	110871188	110871205	110871188	+	High_confidence	2	2	8	0.675101	2.521641	chr1	110870731	110871665	LINE|L2|L2b	-	chr1	110871187	110899922	CD53|ENST00000648608.1	+	110871187,110873155,110891391,110892344,110894326,110894959,110896652,110897808,110899123	110871259,110873248,110891471,110892533,110894401,110895055,110896733,110897892,110899922	0.750000
Peyers_patch_female_adult_53_years	chrX	103718231	103718277	103718276	-	High_confidence	9	11	36	3.037953	4.627987	chrX	103718252	103718364	LINE|L2|L2a	+	chrX	103704424	103718271	STRG.99467.1	-	103704424,103713519,103718144	103707514,103713669,103718271	0.694444
Peyers_patch_female_adult_53_years	chr7	134527596	134527597	134527596	+	High_confidence	1236	1266	1504	126.918932	7.258977	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.988032
Peyers_patch_female_adult_53_years	chr17	42980395	42980410	42980409	-	High_confidence	5	5	11	0.928263	2.550341	chr17	42980326	42980440	LINE|L2|L2a	+	chr17	42968103	42980433	PTGES3L|ENST00000409446.7	-	42968103,42970288,42971606,42979169,42979377,42980045	42969186,42970342,42971696,42979268,42979444,42980433	0.818182
Peyers_patch_female_adult_53_years	chr8	2726956	2726963	2726956	+	High_confidence	14	14	35	2.953566	4.271371	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.514286
Peyers_patch_female_adult_53_years	chr19	40703801	40703802	40703801	-	RAMPAGE_only	6	6	6	0.506326	2.584963	chr19	40703785	40703856	LINE|L2|L2b	+	chr19	40691529	40701459	COQ8B|ENST00000593724.1	-	40691529,40692950,40695988,40700066,40700309	40692373,40693037,40696054,40700174,40701459	0.666667
Peyers_patch_female_adult_53_years	chr3	171679182	171679183	171679182	-	RAMPAGE_only	5	6	8	0.675101	2.521641	chr3	171678688	171679206	LINE|L2|L2c	+	chr3	171653241	171677853	PLD1|ENST00000471075.1	-	171653241,171659212,171662059,171674499,171676714,171677565	171654293,171659301,171662170,171674613,171676833,171677853	0.750000
Peyers_patch_female_adult_53_years	chr1	222737221	222737290	222737289	+	High_confidence	30	30	105	8.860697	5.417876	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.733333
Peyers_patch_female_adult_53_years	chr2	240617389	240617390	240617389	+	RAMPAGE_only	20	20	21	1.772139	2.903702	chr2	240617180	240617426	LTR|ERVL-MaLR|MLT1F2	+	chr2	240618942	240630882	STRG.17376.16	+	240618942,240629948	240623138,240630882	0.952381
Peyers_patch_female_adult_53_years	chr22	39472629	39472655	39472654	+	High_confidence	4	5	12	1.012651	2.550341	chr22	39472644	39472728	SINE|MIR|MIRb	-	chr22	39472787	39487830	MGAT3|ENST00000429402.1	+	39472787,39487346	39472872,39487830	0.916667
Peyers_patch_female_adult_53_years	chr11	65827176	65827214	65827203	-	High_confidence	53	67	232	19.577920	5.012467	chr11	65827195	65827361	SINE|MIR|MIR	+	chr11	65821866	65827233	STRG.62015.1	-	65821866,65826275,65826992	65824648,65826609,65827233	0.982759
Peyers_patch_female_adult_53_years	chr15	78245687	78245688	78245687	-	High_confidence	13	13	13	1.097039	3.026987	chr15	78245271	78246702	LTR|ERV1|LTR12C	-	chr15	78170913	78245688	ACSBG1|ENST00000560817.5	-	78170913,78173592,78174384,78178613,78179549,78180754,78181968,78182465,78182704,78245268	78171529,78173839,78174524,78178831,78179780,78180936,78182145,78182615,78182785,78245688	0.846154
Peyers_patch_female_adult_53_years	chr12	126030632	126030652	126030632	+	High_confidence	5	6	12	1.012651	3.418296	chr12	126030296	126030746	LTR|ERVK|LTR22A	+	chr12	126030606	126052985	STRG.69290.1	+	126030606,126032473,126033073,126052949	126030821,126032552,126033295,126052985	0.750000
Peyers_patch_female_adult_53_years	chr6	35727083	35727102	35727101	+	High_confidence	4	4	8	0.675101	2.521641	chr6	35726871	35727151	LINE|L2|L2c	-	chr6	35727106	35727667	STRG.36012.1	+	35727106	35727667	0.500000
Peyers_patch_female_adult_53_years	chr21	39642381	39642396	39642395	+	High_confidence	240	244	665	56.117746	7.363965	chr21	39642371	39642477	LINE|L2|L2b	-	chr21	39642361	39662888	STRG.94641.6	+	39642361,39660559	39659912,39662888	0.963910
Peyers_patch_female_adult_53_years	chr5	180991644	180991686	180991644	+	RAMPAGE_only	31	31	47	3.966217	4.338142	chr5	180991630	180991740	LINE|L2|L2b	-	chr5	180988857	181006727	STRG.34441.16	+	180988857,181002671	180997488,181006727	0.978723
Peyers_patch_female_adult_53_years	chr9	111284874	111284875	111284874	-	High_confidence	63	65	91	7.679270	4.641413	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.890110
Peyers_patch_female_adult_53_years	chr12	31887190	31887218	31887217	-	High_confidence	4	4	8	0.675101	2.807355	chr12	31887197	31887704	LTR|ERV1|LOR1a	+	chr12	31876968	31887203	LOC105369723|NR_135029.1	-	31876968,31887166	31877893,31887203	0.500000
Peyers_patch_female_adult_53_years	chr4	89009234	89009239	89009234	-	RAMPAGE_only	4	4	10	0.843876	2.521928	chr4	89009158	89009447	LTR|ERV1|LTR24	+	chr4	88767982	89111398	FAM13A|ENST00000502459.5	-	88767982,88781164,88787752,88790585,88805010,88851019,88906378,88938087,88990972,89008950,89020459,89029459,89111041	88768059,88781351,88787932,88790627,88805052,88851183,88906462,88938241,88991150,89009078,89020669,89029649,89111398	0.700000
Peyers_patch_female_adult_53_years	chr11	77175226	77175255	77175254	+	High_confidence	4	6	17	1.434589	3.625000	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.941176
Peyers_patch_female_adult_53_years	chr7	101217578	101217581	101217578	-	High_confidence	7	7	12	1.012651	2.845351	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.916667
Peyers_patch_female_adult_53_years	chr6	31186084	31186135	31186117	-	High_confidence	128	129	322	27.172803	6.551331	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31181923	31186535	STRG.35671.8	-	31181923	31186535	0.888199
Peyers_patch_female_adult_53_years	chr19	15681931	15681960	15681931	+	High_confidence	26	26	92	7.763658	4.890492	chr19	15681898	15682076	SINE|MIR|MIRb	-	chr19	15681500	15697143	CYP4F12|ENST00000546608.1	+	15681500,15683492,15685067,15695935,15696160,15696907	15682514,15684882,15685197,15696069,15696512,15697143	0.989130
Peyers_patch_female_adult_53_years	chr15	60402858	60402887	60402858	-	High_confidence	4	4	14	1.181426	2.950212	chr15	60402666	60403161	LINE|L2|L2c	+	chr15	60364428	60402883	ANXA2|ENST00000557904.5	-	60364428,60382341,60386027,60402768	60364523,60382441,60386086,60402883	0.714286
Peyers_patch_female_adult_53_years	chr4	23762880	23762927	23762902	+	High_confidence	35	41	136	11.476712	5.353539	chr4	23762717	23763262	LTR|ERVL|MLT2A2	+	chr4	23762926	23768625	AC093607.1|ENST00000499715.2	+	23762926,23768318	23763178,23768625	0.860294
Peyers_patch_female_adult_53_years	chr18	39800297	39800305	39800297	-	High_confidence	5	5	9	0.759488	2.947703	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.666667
Peyers_patch_female_adult_53_years	chr15	71747851	71747852	71747851	+	RAMPAGE_only	8	8	9	0.759488	2.750000	chr15	71747409	71747892	LTR|ERV1|LTR44	-	chr15	71744358	71749091	STRG.77624.7	+	71744358,71748420	71747042,71749091	0.555556
Peyers_patch_female_adult_53_years	chr21	33931110	33931167	33931110	+	High_confidence	2	2	11	0.928263	2.594907	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931121	33971186	LINC00649|NR_038883.2	+	33931121,33945809,33969236	33931742,33945895,33971186	1.000000
Peyers_patch_female_adult_53_years	chr6	158303374	158303375	158303374	-	High_confidence	119	121	131	11.054774	4.061649	chr6	158303244	158303618	LTR|ERVK|MER11A	-	chr6	158299433	158303364	STRG.40153.1	-	158299433	158303364	0.786260
Peyers_patch_female_adult_53_years	chr10	105644347	105644377	105644347	+	High_confidence	9	11	24	2.025302	4.251629	chr10	105644158	105644712	LTR|ERVL|MLT2B3	+	chr10	105644360	105681704	STRG.59006.1	+	105644360,105663803,105677192	105644626,105663936,105681704	0.708333
Peyers_patch_female_adult_53_years	chr8	143281685	143281687	143281686	-	High_confidence	25	32	44	3.713054	4.640813	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143281069	143281665	MINCR|ENST00000524335.1	-	143281069,143281481	143281384,143281665	0.500000
Peyers_patch_female_adult_53_years	chr4	13840904	13840952	13840941	-	High_confidence	10	16	71	5.991519	4.993798	chr4	13840869	13840990	SINE|MIR|MIRb	+	chr4	13828876	13841115	STRG.24271.2	-	13828876,13839433,13840760	13838736,13839590,13841115	0.591549
Peyers_patch_female_adult_53_years	chr6	44126632	44126633	44126632	+	High_confidence	64	64	85	7.172945	4.544644	chr6	44126578	44126686	LINE|CR1|X7A_LINE	-	chr6	44126641	44148334	STRG.36403.3	+	44126641,44126920,44127722,44134560,44135016,44135327,44136348,44138479,44139466,44139707,44140251,44141027,44146846,44147376,44148251	44126715,44127141,44127866,44134743,44135096,44135366,44136439,44138517,44139609,44139759,44140360,44141098,44146927,44147500,44148334	0.870588
Peyers_patch_female_adult_53_years	chr2	8572056	8572057	8572056	-	RAMPAGE_only	8	8	11	0.928263	2.521928	chr2	8572000	8572112	LINE|L2|L2b	+	chr2	8570330	8576955	LINC01814|ENST00000436187.1	-	8570330,8576910	8570581,8576955	0.727273
Peyers_patch_female_adult_53_years	chr1	119803219	119803220	119803219	-	RAMPAGE_only	10	10	13	1.097039	2.719295	chr1	119803208	119803584	LTR|ERVL|ERVL-B4-int	+	chr1	119801171	119811580	REG4|ENST00000369401.4	-	119801171,119808702,119811408	119803165,119808863,119811580	0.769231
Peyers_patch_female_adult_53_years	chr15	63050011	63050055	63050054	+	RAMPAGE_only	5	5	17	1.434589	3.077820	chr15	63049931	63050150	SINE|MIR|MIR	+	chr15	63048812	63062277	TPM1|ENST00000560615.5	+	63048812,63056984,63059562,63060868,63061197,63062214	63048920,63057118,63059680,63060939,63061273,63062277	0.764706
Peyers_patch_female_adult_53_years	chr1	45005798	45005806	45005798	-	High_confidence	4	5	9	0.759488	2.500000	chr1	45004848	45005768	LINE|L2|L2c	-	chr1	45002539	45005588	HECTD3|ENST00000486132.5	-	45002539,45003668,45003854,45004059,45004247,45004599	45003576,45003740,45003936,45004134,45004377,45005588	0.888889
Peyers_patch_female_adult_53_years	chr10	95096099	95096117	95096106	-	RAMPAGE_only	8	8	22	1.856527	3.784184	chr10	95095632	95096781	LINE|L1|L1M1	-	chr10	95036771	95069497	CYP2C8|NM_000770.3	-	95036771,95038896,95042889,95045809,95058334,95064799,95067207,95067528,95069234	95037309,95039038,95043077,95045951,95058511,95064960,95067357,95067691,95069497	0.500000
Peyers_patch_female_adult_53_years	chr11	121586101	121586141	121586131	+	RAMPAGE_only	10	10	40	3.375503	4.343943	chr11	121585554	121586209	LINE|L1|L1ME4b	-	chr11	121576837	121629678	SORL1|ENST00000534286.5	+	121576837,121577280,121583457,121586221,121588019,121589258,121590039,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121577038,121577400,121583583,121586329,121588151,121589390,121590174,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121629678	0.725000
Peyers_patch_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	663	750	2407	203.120923	5.059953	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.968841
Peyers_patch_female_adult_53_years	chr3	135965673	135965749	135965718	+	High_confidence	14	15	103	8.691922	5.333352	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	1.000000
Peyers_patch_female_adult_53_years	chr22	46578331	46578332	46578331	+	RAMPAGE_only	9	9	13	1.097039	2.873141	chr22	46578347	46578471	SINE|MIR|MIRc	+	chr22	46577128	46626899	GRAMD4|ENST00000431155.1	+	46577128,46626750	46577290,46626899	0.538462
Peyers_patch_female_adult_53_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	16	16	16	1.350201	2.905639	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
Peyers_patch_female_adult_53_years	chr21	29077486	29077517	29077486	+	High_confidence	7	7	27	2.278465	3.884155	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.518519
Peyers_patch_female_adult_53_years	chr1	119379424	119379446	119379445	-	High_confidence	20	21	46	3.881829	4.629662	chr1	119378945	119379469	LTR|ERVL|MER68	-	chr1	119375471	119379391	STRG.5323.3	-	119375471	119379391	0.652174
Peyers_patch_female_adult_53_years	chr15	71331900	71331955	71331909	+	High_confidence	12	14	82	6.919782	5.474547	chr15	71331901	71332325	LTR|ERVL|LTR16B2	-	chr15	71332119	71352460	AC064799.2|ENST00000648513.1	+	71332119,71348151,71352193	71332372,71348490,71352460	0.585366
Peyers_patch_female_adult_53_years	chr2	240618922	240618923	240618922	+	High_confidence	8	8	8	0.675101	2.500000	chr2	240617462	240619377	LINE|L1|L1MC5	-	chr2	240618942	240631258	GPR35|ENST00000430267.2	+	240618942,240629948	240619031,240631258	1.000000
Peyers_patch_female_adult_53_years	chr4	48546118	48546154	48546118	-	High_confidence	3	4	11	0.928263	2.846439	chr4	48546053	48546089	LINE|CR1|X7C_LINE	-	chr4	48521093	48546759	FRYL|ENST00000513401.5	-	48521093,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066	48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546759	0.636364
Peyers_patch_female_adult_53_years	chr11	61345867	61345940	61345939	+	High_confidence	9	9	57	4.810092	5.014834	chr11	61345974	61346173	SINE|MIR|MIRb	+	chr11	61345313	61346890	TKFC|ENST00000525366.5	+	61345313,61345711,61345856,61346350	61345565,61345745,61345946,61346890	0.912281
Peyers_patch_female_adult_53_years	chrX	48522499	48522510	48522499	-	High_confidence	21	23	51	4.303767	4.508032	chrX	48522480	48522543	LINE|L2|L2b	+	chrX	48521349	48522510	STRG.97852.1	-	48521349	48522510	0.941176
Peyers_patch_female_adult_53_years	chr16	19430403	19430418	19430417	+	RAMPAGE_only	21	23	35	2.953566	4.089552	chr16	19430397	19430533	LINE|RTE-X|L4_B_Mam	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	0.942857
Peyers_patch_female_adult_53_years	chr7	15668184	15668223	15668222	+	High_confidence	6	6	24	2.025302	3.425119	chr7	15668111	15668470	DNA|TcMar-Tigger|Tigger2a	+	chr7	15667946	15681980	AC005550.2|ENST00000451240.1	+	15667946,15676019,15677462,15678913	15668296,15676160,15677647,15681980	0.875000
Peyers_patch_female_adult_53_years	chrX	16653573	16653579	16653578	-	RAMPAGE_only	14	14	23	1.940915	2.946513	chrX	16653409	16653606	SINE|Alu|AluJo	+	chrX	16588305	16654722	STRG.97237.3	-	16588305,16590751,16609540,16617149,16620276,16639146,16653205	16589775,16590862,16609685,16617246,16620332,16639243,16654722	0.521739
Peyers_patch_female_adult_53_years	chr1	25818713	25818714	25818713	+	High_confidence	10	10	14	1.181426	3.039149	chr1	25818458	25818747	LTR|ERVL|LTR16A1	-	chr1	25818639	25829514	MTFR1L|ENST00000424294.5	+	25818639,25823018,25823643,25826301,25826614,25829508	25818852,25823128,25823748,25826411,25826826,25829514	0.714286
Peyers_patch_female_adult_53_years	chr11	77175302	77175303	77175302	+	High_confidence	7	7	9	0.759488	2.725481	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.888889
Peyers_patch_female_adult_53_years	chr2	43800342	43800371	43800342	+	RAMPAGE_only	25	29	74	6.244681	5.117706	chr2	43800298	43800421	DNA|TcMar-Mariner|MARNA	-	chr2	43798920	43809997	STRG.11228.6	+	43798920,43800840,43801638,43804641,43805153,43809704	43800432,43800917,43801709,43804739,43805246,43809997	0.608108
Peyers_patch_female_adult_53_years	chr9	121314002	121314021	121314002	+	RAMPAGE_only	30	31	81	6.835395	4.772545	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
Peyers_patch_female_adult_53_years	chr2	159428345	159428357	159428356	-	RAMPAGE_only	15	15	26	2.194077	4.132944	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.923077
Peyers_patch_female_adult_53_years	chr19	54617128	54617153	54617128	+	High_confidence	3	3	13	1.097039	3.392747	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.923077
Peyers_patch_female_adult_53_years	chr7	104940943	104940944	104940943	+	High_confidence	53	53	55	4.641317	4.569730	chr7	104939974	104941430	LTR|ERV1|LTR12C	+	chr7	104941062	104962060	AC007384.1|ENST00000415513.1	+	104941062,104961983	104941670,104962060	0.945455
Peyers_patch_female_adult_53_years	chr15	67064021	67064099	67064021	+	High_confidence	18	18	192	16.202417	6.068611	chr15	67063857	67064075	SINE|MIR|MIRb	+	chr15	67063911	67181420	STRG.77396.5	+	67063911,67164894,67165252,67166778,67170553,67181240	67064182,67165088,67165384,67166853,67170604,67181420	0.515625
Peyers_patch_female_adult_53_years	chr15	40838682	40838704	40838703	-	RAMPAGE_only	6	6	12	1.012651	3.022055	chr15	40838376	40838886	LTR|ERVL-MaLR|MLT1G1	-	chr15	40838338	40844300	SPINT1-AS1|ENST00000568525.1	-	40838338,40844178	40838686,40844300	0.583333
Peyers_patch_female_adult_53_years	chr11	3477038	3477068	3477038	-	RAMPAGE_only	8	8	45	3.797441	4.308768	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3475428	3484209	STRG.59946.1	-	3475428	3484209	0.977778
Peyers_patch_female_adult_53_years	chrX	48683361	48683363	48683361	+	High_confidence	13	20	20	1.687752	3.684184	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.950000
Peyers_patch_female_adult_53_years	chr16	19449555	19449600	19449599	+	RAMPAGE_only	6	6	30	2.531628	4.047299	chr16	19449636	19450005	LTR|ERVL-MaLR|THE1D	+	chr16	19456449	19499113	TMC5|ENST00000219821.9	+	19456449,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19457016,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	0.733333
Peyers_patch_female_adult_53_years	chr1	17513346	17513391	17513356	+	RAMPAGE_only	5	5	29	2.447240	3.840403	chr1	17513264	17513548	DNA|TcMar-Mariner|MARNA	-	chr1	17520217	17588864	STRG.986.8	+	17520217,17580552,17587459,17588445	17520458,17580632,17587645,17588864	0.586207
Peyers_patch_female_adult_53_years	chr11	86511160	86511179	86511160	-	RAMPAGE_only	4	5	13	1.097039	3.084963	chr11	86510771	86511422	LINE|L2|L2c	+	chr11	86446892	86671965	ME3|ENST00000530520.5	-	86446892,86448149,86449888,86450300,86465090,86487336,86497962,86508791,86556552,86559689,86671761	86447207,86448255,86450002,86450398,86465200,86487440,86498124,86508867,86556702,86559823,86671965	0.538462
Peyers_patch_female_adult_53_years	chr17	29643374	29643378	29643374	-	RAMPAGE_only	9	9	18	1.518977	3.302723	chr17	29643278	29643403	LTR|ERVL-MaLR|MLT1L	+	chr17	29630799	29761417	SSH2|ENST00000649863.1	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677738,29684684,29695523,29703062,29761417	0.666667
Peyers_patch_female_adult_53_years	chrX	66172281	66172358	66172281	+	RAMPAGE_only	7	7	34	2.869178	4.241731	chrX	66172197	66172316	LINE|CR1|L3b	-	chrX	66170545	66208246	HEPH|ENST00000425114.1	+	66170545,66172354,66173588,66188358,66189683,66192129,66193501,66195097,66197811,66198877,66200539,66203363,66207194,66208114	66170737,66172599,66173801,66188541,66189938,66192298,66193638,66195229,66197894,66199028,66200752,66203577,66207334,66208246	0.882353
Peyers_patch_female_adult_53_years	chr2	206957096	206957097	206957096	+	RAMPAGE_only	5	5	8	0.675101	2.500000	chr2	206957098	206957395	SINE|Alu|AluSc8	+	chr2	206939553	206969474	CPO|NM_173077.2	+	206939553,206949616,206955462,206958300,206959630,206960851,206962411,206968262,206969173	206939667,206949713,206955564,206958405,206959741,206960942,206962614,206968347,206969474	0.750000
Peyers_patch_female_adult_53_years	chr5	133089677	133089693	133089677	+	RAMPAGE_only	8	8	13	1.097039	3.418296	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.923077
Peyers_patch_female_adult_53_years	chr22	24011756	24011757	24011756	+	High_confidence	9	9	9	0.759488	2.947703	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.777778
Peyers_patch_female_adult_53_years	chr16	67183456	67183467	67183466	-	High_confidence	4	4	10	0.843876	2.947703	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.900000
Peyers_patch_female_adult_53_years	chr14	73463624	73463642	73463624	-	High_confidence	17	17	26	2.194077	3.720176	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73366896	73463625	AC005280.3|ENST00000556700.5	-	73366896,73409936,73462528,73463474	73366981,73410068,73462689,73463625	0.730769
Peyers_patch_female_adult_53_years	chr11	1092706	1092870	1092854	+	RAMPAGE_only	28	30	136	11.476712	5.568322	chr11	1092816	1092887	DNA|hAT-Ac|OldhAT1	-	chr11	1074876	1103456	STRG.59847.2	+	1074876,1075650,1077453,1077951,1078122,1078311,1081661,1082284,1082480,1082877,1083076,1083424,1083652,1084290,1084591,1085067,1085553,1085744,1086245,1086734,1087754,1087946,1088257,1089508,1089941,1090763,1092398,1092843,1093533,1094141,1096920,1098724,1100756,1101222,1101755,1102416,1103273	1074977,1075921,1077568,1078042,1078232,1078522,1081787,1082402,1082619,1082988,1083146,1083562,1083817,1084385,1084718,1085323,1085606,1085845,1086397,1086873,1087865,1088126,1088497,1089665,1090073,1090911,1092442,1093047,1093551,1096743,1097157,1100025,1100954,1101446,1101930,1102664,1103456	0.970588
Peyers_patch_female_adult_53_years	chr22	23705502	23705514	23705513	-	RAMPAGE_only	11	11	26	2.194077	3.669275	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.923077
Peyers_patch_female_adult_53_years	chr1	184590774	184590803	184590802	+	RAMPAGE_only	4	5	12	1.012651	2.663533	chr1	184590844	184591183	DNA|TcMar-Tigger|MER2B	+	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.916667
Peyers_patch_female_adult_53_years	chr7	154928477	154928504	154928503	+	High_confidence	6	6	17	1.434589	3.452820	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.823529
Peyers_patch_female_adult_53_years	chr11	71745914	71745938	71745914	+	High_confidence	9	9	38	3.206728	4.448861	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.973684
Peyers_patch_female_adult_53_years	chr10	96244597	96244603	96244602	-	RAMPAGE_only	5	6	9	0.759488	2.500000	chr10	96244496	96244553	DNA|hAT-Charlie|Charlie18a	-	chr10	96215848	96227497	BLNK|ENST00000472763.1	-	96215848,96223825,96227409	96216734,96223989,96227497	0.666667
Peyers_patch_female_adult_53_years	chr17	39708181	39708217	39708193	+	High_confidence	6	6	17	1.434589	3.280639	chr17	39708092	39708239	SINE|MIR|MIRc	-	chr17	39707403	39726351	ERBB2|ENST00000583038.5	+	39707403,39709317,39709812,39710085,39710339,39711927,39712321,39715285,39715445,39715739,39717319,39719786,39723318,39723537,39723911,39724725,39725048	39708534,39709452,39709881,39710201,39710481,39712047,39712448,39715359,39715536,39716605,39717480,39719834,39723457,39723660,39724010,39724911,39726351	0.941176
Peyers_patch_female_adult_53_years	chr6	56876095	56876147	56876135	-	High_confidence	43	51	203	17.130680	5.878646	chr6	56876105	56876750	LINE|L2|L2a	+	chr6	56670674	56876148	STRG.36857.15	-	56670674,56699652,56701887,56704279,56735227,56851396,56875995	56670807,56699745,56701965,56704369,56735289,56851604,56876148	0.950739
Peyers_patch_female_adult_53_years	chr11	87359798	87359806	87359798	+	High_confidence	10	10	22	1.856527	4.061482	chr11	87359683	87359924	LTR|ERVL|LTR18A	+	chr11	87359756	87427249	STRG.63032.1	+	87359756,87362356,87372791,87409029	87359950,87362476,87372868,87427249	0.590909
Peyers_patch_female_adult_53_years	chrX	15602157	15602158	15602157	-	High_confidence	27	27	31	2.616015	3.058877	chrX	15602053	15602111	LINE|CR1|L3	-	chrX	15594886	15602148	ACE2|ENST00000484756.1	-	15594886,15600725,15601955	15595003,15601014,15602148	0.806452
Peyers_patch_female_adult_53_years	chr19	9140393	9140428	9140393	+	High_confidence	61	61	164	13.839564	5.699249	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.878049
Peyers_patch_female_adult_53_years	chr6	89656021	89656046	89656045	-	RAMPAGE_only	8	8	13	1.097039	3.084963	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642498	89819723	MDN1|ENST00000369393.7	-	89642498,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89706058,89707360,89708495,89710680,89712035,89712574,89713147,89714542,89715652,89716649,89718365,89718766,89719135,89722954,89723511,89725198,89727832,89728930,89730725,89732556,89738325,89740233,89743149,89743575,89745272,89745491,89747328,89749222,89749542,89750353,89751430,89753511,89754082,89756276,89758254,89758815,89761644,89762318,89771560,89772572,89774620,89776599,89780211,89781398,89785011,89787853,89789779,89790158,89793761,89794099,89794576,89803327,89819505	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89706192,89707476,89708628,89710794,89712256,89712786,89713296,89714751,89715769,89716809,89718627,89719030,89719225,89723143,89723619,89725396,89727955,89729139,89730923,89732775,89738455,89740378,89743280,89743714,89745411,89745626,89747470,89749369,89749751,89750532,89751582,89753622,89754230,89756390,89758351,89758960,89761748,89762530,89771621,89772721,89774733,89776695,89780293,89781592,89785126,89787957,89789911,89790401,89793954,89794207,89794801,89803554,89819723	0.923077
Peyers_patch_female_adult_53_years	chr3	37987981	37987994	37987989	+	High_confidence	180	192	742	62.615590	6.682918	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	37997187	STRG.19015.10	+	37988058,37993586,37993897,37995738,37997076	37988238,37993732,37994466,37995847,37997187	0.826146
Peyers_patch_female_adult_53_years	chr10	68307169	68307194	68307169	-	High_confidence	5	5	17	1.434589	2.609850	chr10	68307029	68307329	SINE|Alu|AluSx1	-	chr10	68287026	68306879	PBLD|ENST00000277795.8	-	68287026,68292009,68292128,68296885,68306760	68289019,68292039,68292238,68296985,68306879	0.823529
Peyers_patch_female_adult_53_years	chr2	61962599	61962621	61962619	+	RAMPAGE_only	3	6	13	1.097039	3.084963	chr2	61962268	61962878	LTR|ERVL|MER77B	+	chr2	61905646	62136247	COMMD1|ENST00000311832.5	+	61905646,62000700,62135830	61905858,62000982,62136247	0.923077
Peyers_patch_female_adult_53_years	chr15	92914930	92914951	92914950	+	High_confidence	11	11	24	2.025302	3.772055	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	1.000000
Peyers_patch_female_adult_53_years	chr16	29736923	29736924	29736923	-	High_confidence	31	33	41	3.459891	4.521829	chr16	29736740	29737042	LTR|ERVL-MaLR|THE1C	-	chr16	29731050	29736944	STRG.80401.2	-	29731050,29736823	29736707,29736944	1.000000
Peyers_patch_female_adult_53_years	chr16	19393734	19393735	19393734	-	High_confidence	23	23	24	2.025302	3.827910	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19392212	19393468	AC130456.7|ENST00000623838.1	-	19392212	19393468	0.791667
Peyers_patch_female_adult_53_years	chr21	33931224	33931225	33931224	+	High_confidence	8	9	9	0.759488	2.500000	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.555556
Peyers_patch_female_adult_53_years	chr11	67884427	67884428	67884427	+	RAMPAGE_only	21	21	24	2.025302	3.390805	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.541667
Peyers_patch_female_adult_53_years	chr7	87519353	87519364	87519363	-	High_confidence	6	6	15	1.265814	3.373557	chr7	87519184	87519318	SINE|5S-Deu-L2|AmnSINE1	-	chr7	87505901	87518963	ABCB1|ENST00000475929.5	-	87505901,87509274,87515230,87516508,87518880	87506043,87509481,87515428,87516665,87518963	1.000000
Peyers_patch_female_adult_53_years	chr20	47339768	47339797	47339796	-	RAMPAGE_only	3	5	13	1.097039	3.084963	chr20	47339485	47339779	SINE|Alu|AluY	-	chr20	47209213	47355657	ZMYND8|ENST00000311275.11	-	47209213,47220257,47221313,47224316,47227202,47229725,47236325,47238757,47246007,47249286,47262287,47276313,47282101,47283570,47287228,47290186,47291795,47294665,47298728,47310055,47347855,47355449	47210897,47220324,47221474,47224556,47227281,47229806,47236516,47239138,47246517,47249439,47262428,47276795,47282217,47283648,47287284,47290274,47291888,47294779,47298947,47310204,47347926,47355657	0.846154
Peyers_patch_female_adult_53_years	chr16	24844806	24844807	24844806	+	High_confidence	8	8	8	0.675101	2.500000	chr16	24844650	24844843	SINE|MIR|MIR	+	chr16	24844827	24882097	STRG.79924.5	+	24844827,24846231,24858619,24862600,24869900,24872159,24875626	24845027,24846969,24858778,24862672,24870005,24872219,24882097	1.000000
Peyers_patch_female_adult_53_years	chr7	107580245	107580265	107580245	+	High_confidence	90	91	400	33.755035	5.918654	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.932500
Peyers_patch_female_adult_53_years	chr19	16066936	16066970	16066969	+	High_confidence	15	15	39	3.291116	3.935446	chr19	16066937	16067003	LINE|L2|L2c	-	chr19	16067020	16076141	TPM4|ENST00000589897.1	+	16067020,16067533,16076046	16067306,16067738,16076141	0.974359
Peyers_patch_female_adult_53_years	chr20	24930639	24930651	24930639	+	High_confidence	11	11	52	4.388155	4.781701	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930641	24932983	STRG.92415.1	+	24930641,24931346	24930774,24932983	0.788462
Peyers_patch_female_adult_53_years	chr3	139344547	139344573	139344547	+	High_confidence	19	19	44	3.713054	4.144547	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.931818
Peyers_patch_female_adult_53_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	10	10	12	1.012651	2.855389	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.833333
Peyers_patch_female_adult_53_years	chr16	21048703	21048704	21048703	-	RAMPAGE_only	45	48	48	4.050604	4.563532	chr16	21042672	21048703	LINE|L1|L1PA2	-	chr16	20996858	21063000	DNAH3|ENST00000572640.5	-	20996858,21000223,21003103,21019623,21021970,21024595,21027026,21031044,21033973,21036713,21037760,21039851,21042026,21049568,21049909,21051669,21054419,21058085,21060263,21062481,21062771	20997462,21000518,21003207,21019869,21022100,21024701,21027127,21031286,21034085,21036848,21037980,21039943,21042203,21049682,21050018,21051868,21054534,21058196,21060356,21062683,21063000	0.770833
Peyers_patch_female_adult_53_years	chr1	204116615	204116632	204116615	+	High_confidence	4	5	10	0.843876	2.521928	chr1	204116612	204116693	LINE|RTE-BovB|MamRTE1	+	chr1	204116506	204122917	SOX13|ENST00000480326.1	+	204116506,204117121,204117592,204121870,204122236,204122853	204116679,204117190,204117707,204121985,204122399,204122917	1.000000
Peyers_patch_female_adult_53_years	chr10	112372396	112372397	112372396	+	High_confidence	76	76	85	7.172945	5.424748	chr10	112371581	112372669	LTR|ERV1|LTR12C	+	chr10	112372498	112417938	STRG.59129.6	+	112372498,112374085,112394917,112398900,112404510,112404704,112408421,112409506,112410462,112410583,112411455,112411901,112413172,112416887,112417845	112372826,112374269,112395102,112399009,112404575,112404806,112408521,112409685,112410495,112410635,112411529,112411979,112413307,112417022,112417938	0.905882
Peyers_patch_female_adult_53_years	chr20	18794077	18794086	18794077	+	High_confidence	13	13	30	2.531628	3.415922	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
Peyers_patch_female_adult_53_years	chr4	2036471	2036572	2036571	+	High_confidence	90	101	607	51.223266	4.818074	chr4	2036585	2036842	LTR|ERVL|ERVL-E-int	+	chr4	2036487	2043964	STRG.23799.2	+	2036487,2039996,2042326,2042735,2043860	2036661,2042068,2042484,2042824,2043964	0.988468
Peyers_patch_female_adult_53_years	chr4	75127261	75127300	75127261	-	RAMPAGE_only	9	9	31	2.616015	4.082598	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.741935
Peyers_patch_female_adult_53_years	chr16	66943874	66944253	66944222	+	RAMPAGE_only	87	97	680	57.383559	6.941724	chr16	66944189	66944323	SINE|Alu|FLAM_A	+	chr16	66934470	66945096	CES2|NR_036684.1	+	66934470,66938036,66939216,66940221,66940436,66941123,66941505,66941767,66942104,66942647,66943298,66943838	66935976,66938241,66939358,66940355,66940695,66941222,66941646,66941848,66942249,66942785,66943371,66945096	0.998529
Peyers_patch_female_adult_53_years	chr20	9333276	9333308	9333276	+	High_confidence	455	462	1039	87.678703	6.682029	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9333068	9367213	STRG.91819.3	+	9333068,9337125,9338007,9338893,9362895,9365460	9333570,9337206,9338067,9339037,9362975,9367213	0.969201
Peyers_patch_female_adult_53_years	chr6	168093029	168093063	168093062	-	High_confidence	4	4	12	1.012651	2.625815	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.666667
Peyers_patch_female_adult_53_years	chr9	69122996	69123015	69123014	+	High_confidence	4	4	14	1.181426	2.842371	chr9	69122999	69123107	DNA|hAT-Charlie|MER5A1	+	chr9	69123047	69246746	TJP2|ENST00000647986.1	+	69123047,69151650,69185086,69212547,69216338,69218256,69220886,69225303,69226021,69227764,69227980,69229183,69230081,69234438,69236027,69236948,69237877,69238709,69239936,69246689	69123113,69151771,69185204,69212601,69216463,69218359,69221496,69225407,69226175,69227873,69228114,69229250,69230232,69234547,69236238,69237136,69237973,69238789,69240147,69246746	0.714286
Peyers_patch_female_adult_53_years	chr9	89479889	89479890	89479889	-	High_confidence	71	71	71	5.991519	4.133362	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	1.000000
Peyers_patch_female_adult_53_years	chr9	128113478	128113479	128113478	-	RAMPAGE_only	9	9	12	1.012651	3.277613	chr9	128113305	128113520	LINE|L2|L2a	+	chr9	128104860	128127675	STRG.54716.1	-	128104860,128115073,128117709,128117922,128118342,128122361,128122933,128123701,128124491,128125243,128127438	128114686,128115289,128117835,128118118,128121273,128122479,128123134,128123851,128124550,128125441,128127675	0.916667
Peyers_patch_female_adult_53_years	chrX	53585017	53585038	53585037	-	RAMPAGE_only	5	5	12	1.012651	2.751629	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	1.000000
Peyers_patch_female_adult_53_years	chr22	38099131	38099170	38099131	-	RAMPAGE_only	3	3	8	0.675101	2.500000	chr22	38099105	38099253	SINE|MIR|MIR3	+	chr22	38084902	38110645	BAIAP2L2|ENST00000332536.9	-	38084902,38085685,38086241,38086389,38087123,38088747,38089095,38089521,38097031,38098062,38098410,38107851,38108254,38109132,38110474	38085375,38085732,38086347,38086449,38087264,38088964,38089231,38089674,38097178,38098179,38098482,38107913,38108341,38109208,38110645	0.750000
Peyers_patch_female_adult_53_years	chr4	184382284	184382295	184382294	-	High_confidence	23	25	36	3.037953	4.014102	chr4	184382179	184382738	LTR|ERVL|LTR67B	+	chr4	184377927	184382971	STRG.28957.1	-	184377927,184382133	184379129,184382971	0.777778
Peyers_patch_female_adult_53_years	chr1	1721622	1721689	1721688	-	High_confidence	16	16	61	5.147643	4.988234	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.622951
Peyers_patch_female_adult_53_years	chr5	134613241	134613242	134613241	-	High_confidence	4	7	7	0.590713	2.807355	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606986	134613137	SAR1B|ENST00000509730.5	-	134606986,134608371,134609570,134612690,134613013	134607066,134608503,134609674,134612756,134613137	0.571429
Peyers_patch_female_adult_53_years	chr4	81154212	81154222	81154221	-	High_confidence	12	12	35	2.953566	3.668728	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.971429
Peyers_patch_female_adult_53_years	chr2	237579472	237579518	237579505	-	High_confidence	5	5	20	1.687752	3.681881	chr2	237579285	237579685	LTR|ERVL-MaLR|MLT1C	-	chr2	237574325	237579570	RAB17|ENST00000477149.5	-	237574325,237575386,237577256	237575128,237575480,237579570	0.950000
Peyers_patch_female_adult_53_years	chr11	64242486	64242547	64242546	+	High_confidence	10	10	34	2.869178	3.733372	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
Peyers_patch_female_adult_53_years	chr11	624247	624253	624247	-	High_confidence	14	15	35	2.953566	3.969816	chr11	624236	624405	SINE|MIR|MIR1_Amn	-	chr11	617255	624932	CDHR5|ENST00000531177.5	-	617255,617953,618598,619305,619473,619680,620066,620295,621079,621344,621561,621811,624212,624556,624817	617770,618111,619180,619390,619587,619881,620164,620386,621250,621455,621663,621904,624416,624732,624932	0.971429
Peyers_patch_female_adult_53_years	chr8	97931040	97931054	97931052	+	High_confidence	4	5	9	0.759488	2.503258	chr8	97931029	97931087	LINE|RTE-BovB|MamRTE1	+	chr8	97931340	98036214	MATN2|ENST00000518154.5	+	97931340,97941776,97978885,97994479,98003660,98007104,98007478,98016539,98017993,98021204,98027415,98030461,98032245,98033098,98033560,98035656	97931522,97941899,97979008,97994602,98003783,98007227,98007601,98016662,98018116,98021327,98027829,98030614,98032317,98033176,98033659,98036214	0.555556
Peyers_patch_female_adult_53_years	chr4	75180938	75180984	75180938	-	RAMPAGE_only	3	3	27	2.278465	4.163856	chr4	75180613	75186400	LINE|L1|L1PB1	+	chr4	75178524	75178884	STRG.25825.1	-	75178524	75178884	0.851852
Peyers_patch_female_adult_53_years	chr2	201458828	201458854	201458853	+	RAMPAGE_only	3	3	6	0.506326	2.584963	chr2	201458879	201459004	SINE|Alu|FLAM_C	+	chr2	201451795	201480846	STRADB|ENST00000392249.6	+	201451795,201454745,201458783,201469952,201472954,201474646,201475618,201477618,201478086,201478356,201479488,201480007	201451938,201454852,201458864,201470052,201473076,201474755,201475742,201477790,201478191,201478601,201479531,201480846	1.000000
Peyers_patch_female_adult_53_years	chr16	28952140	28952153	28952152	+	RAMPAGE_only	4	4	8	0.675101	2.500000	chr16	28952153	28952214	DNA|hAT-Ac|OldhAT1	+	chr16	28950996	28966465	NFATC2IP|NM_032815.3	+	28950996,28952131,28954564,28955977,28956150,28958716,28958990,28963704	28951398,28952204,28954682,28956058,28956337,28958861,28959100,28966465	0.750000
Peyers_patch_female_adult_53_years	chr15	53116364	53116368	53116367	+	High_confidence	9	12	17	1.434589	3.125000	chr15	53116204	53116486	LTR|ERVL-MaLR|MSTD	+	chr15	53116364	53129698	LINC02490|ENST00000559915.1	+	53116364,53118218,53129238	53116458,53118265,53129698	0.647059
Peyers_patch_female_adult_53_years	chr4	851139	851140	851139	-	High_confidence	14	14	17	1.434589	3.057476	chr4	851102	851393	SINE|Alu|AluJb	-	chr4	849275	851673	GAK|ENST00000502799.1	-	849275,849891	849774,851673	1.000000
Peyers_patch_female_adult_53_years	chr17	50271485	50271488	50271485	+	High_confidence	97	100	181	15.274153	5.619972	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	0.950276
Peyers_patch_female_adult_53_years	chr8	9436185	9436249	9436248	-	High_confidence	5	5	29	2.447240	4.164498	chr8	9436012	9436289	LINE|L2|L2c	-	chr8	9426920	9436232	STRG.47033.1	-	9426920,9436031	9428465,9436232	0.758621
Peyers_patch_female_adult_53_years	chr16	67183549	67183579	67183549	-	High_confidence	5	5	18	1.518977	3.614369	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67176729	67183941	KIAA0895L|ENST00000563902.1	-	67176729,67178009,67178198,67179429,67179814,67180040,67183261	67176975,67178107,67178504,67179562,67179958,67180666,67183941	0.611111
Peyers_patch_female_adult_53_years	chr11	76920089	76920128	76920089	+	RAMPAGE_only	4	4	28	2.362852	3.994680	chr11	76919910	76920629	LTR|ERVL|LTR41	+	chr11	76926556	77015106	ACER3|ENST00000527508.1	+	76926556,76958978,76976288,76985642,76990538,76998762,77011329,77015015	76926667,76959031,76976341,76985724,76990574,76998821,77011375,77015106	0.785714
Peyers_patch_female_adult_53_years	chr12	8696640	8696675	8696674	+	High_confidence	11	11	28	2.362852	4.088221	chr12	8696484	8696683	SINE|MIR|MIR	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.750000
Peyers_patch_female_adult_53_years	chr16	2759957	2760016	2759989	+	High_confidence	9	9	30	2.531628	3.485918	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	1.000000
Peyers_patch_female_adult_53_years	chr11	71480100	71480101	71480100	+	High_confidence	7	7	11	0.928263	2.663533	chr11	71479919	71480150	LINE|L1|L1MB7	-	chr11	71480148	71490876	NADSYN1|ENST00000526039.6	+	71480148,71480754,71481355,71482000,71482848,71484311,71485541,71490844	71480274,71480879,71481404,71482025,71483017,71484447,71485648,71490876	1.000000
Peyers_patch_female_adult_53_years	chr8	35744004	35744063	35744004	+	High_confidence	7	7	58	4.894480	5.232728	chr8	35743605	35744700	LINE|L1|L1MC4	-	chr8	35743978	35762060	STRG.47809.9	+	35743978,35748526,35750581,35759319	35744105,35748695,35750809,35762060	0.706897
Peyers_patch_female_adult_53_years	chr8	101112222	101112245	101112244	+	RAMPAGE_only	8	8	14	1.181426	3.085055	chr8	101112182	101112498	LINE|L2|L2a	-	chr8	101128986	101133245	AP003469.1|ENST00000520411.1	+	101128986,101133031	101129270,101133245	0.571429
Peyers_patch_female_adult_53_years	chr12	4720393	4720433	4720429	+	High_confidence	62	65	247	20.843734	5.032236	chr12	4720007	4720593	LTR|ERVK|LTR14C	-	chr12	4720340	4772726	GALNT8|ENST00000252318.6	+	4720340,4726531,4739162,4744516,4745428,4746143,4760957,4763252,4763951,4765378,4772444	4720888,4726829,4739329,4744700,4745626,4746258,4761143,4763390,4764047,4765546,4772726	0.987854
Peyers_patch_female_adult_53_years	chr6	85390205	85390220	85390207	-	High_confidence	12	17	28	2.362852	3.521641	chr6	85390133	85390460	LINE|L2|L2c	+	chr6	85387218	85390186	LINC02535|ENST00000455071.1	-	85387218,85390012	85389557,85390186	0.607143
Peyers_patch_female_adult_53_years	chr10	65570512	65570536	65570521	+	High_confidence	6	10	27	2.278465	4.032303	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570535	65585775	LINC01515|ENST00000608678.5	+	65570535,65571424,65572934,65581611,65585484	65570759,65571579,65573056,65581673,65585775	0.740741
Peyers_patch_female_adult_53_years	chr18	73691279	73691291	73691279	-	RAMPAGE_only	4	4	15	1.265814	2.807355	chr18	73691250	73691410	LTR|ERV1|MER41C	+	chr18	73648281	73684072	STRG.87720.1	-	73648281,73653601,73684026	73648396,73653732,73684072	0.533333
Peyers_patch_female_adult_53_years	chr6	12261029	12261071	12261056	+	High_confidence	7	7	26	2.194077	4.161978	chr6	12260893	12261158	LINE|L1|L1M5	+	chr6	12261034	12262515	STRG.34824.1	+	12261034	12262515	0.846154
Peyers_patch_female_adult_53_years	chr11	66351516	66351518	66351517	+	RAMPAGE_only	16	21	28	2.362852	3.912114	chr11	66350959	66351598	LINE|L1|L1MB4	-	chr11	66348578	66357185	STRG.61868.4	+	66348578,66353454	66352181,66357185	0.964286
Peyers_patch_female_adult_53_years	chr2	11201309	11201371	11201313	-	RAMPAGE_only	5	5	26	2.194077	3.517894	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.923077
Peyers_patch_female_adult_53_years	chr11	63563627	63563665	63563627	-	High_confidence	11	11	30	2.531628	4.389898	chr11	63563436	63563737	SINE|Alu|AluY	+	chr11	63552769	63563383	HRASLS2|ENST00000255695.1	-	63552769,63558391,63560084,63563315	63553065,63558660,63560193,63563383	0.766667
Peyers_patch_female_adult_53_years	chr8	30576449	30576450	30576449	-	RAMPAGE_only	9	9	9	0.759488	2.503258	chr8	30576441	30576646	DNA|TcMar-Tigger|Tigger1a_Art	-	chr8	30575930	30658209	STRG.47682.2	-	30575930,30607056,30612298,30614607,30635031,30653432,30657574	30580396,30607150,30612481,30614715,30635123,30653602,30658209	0.777778
Peyers_patch_female_adult_53_years	chrX	44225802	44225827	44225802	-	High_confidence	21	21	48	4.050604	4.493433	chrX	44225702	44225811	SINE|MIR|MIR3	-	chrX	44147881	44225756	EFHC2|ENST00000343571.3	-	44147881,44163921,44176291,44178366,44225684	44148896,44164027,44176384,44178564,44225756	0.916667
Peyers_patch_female_adult_53_years	chr2	227534932	227534933	227534932	+	RAMPAGE_only	6	6	8	0.675101	2.500000	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.625000
Peyers_patch_female_adult_53_years	chrX	32854089	32854162	32854150	-	High_confidence	12	12	41	3.459891	4.258695	chrX	32851464	32854639	LINE|L1|L1MA3	+	chrX	32593033	32854137	STRG.97498.2	-	32593033,32595756,32614302,32644131,32644963,32697869,32699111,32809492,32816467,32823294,32844782,32849727,32854045	32593314,32595876,32614453,32644313,32645152,32697998,32699293,32809611,32816640,32823387,32844860,32849820,32854137	0.975610
Peyers_patch_female_adult_53_years	chr22	25014507	25014522	25014515	+	RAMPAGE_only	2	2	7	0.590713	2.584963	chr22	25014407	25014703	SINE|Alu|AluJr	-	chr22	24952729	25194457	KIAA1671|ENST00000406486.8	+	24952729,25014429,25025632,25027944,25032608,25038759,25049229,25170819,25174239,25177347,25181698,25184976,25190701,25192405	24952772,25014566,25025784,25029540,25032696,25041525,25049364,25170938,25174489,25177522,25181823,25185119,25190784,25194457	0.857143
Peyers_patch_female_adult_53_years	chr3	108375751	108375777	108375776	+	RAMPAGE_only	6	6	16	1.350201	2.872906	chr3	108375646	108375863	LTR|ERVL|LTR33	-	chr3	108353655	108378285	HHLA2|ENST00000482099.1	+	108353655,108355114,108357843,108362341,108375749,108376492	108353780,108355381,108358161,108362446,108375800,108378285	0.937500
Peyers_patch_female_adult_53_years	chr6	142308171	142308186	142308185	+	RAMPAGE_only	5	5	15	1.265814	2.664498	chr6	142308138	142308365	SINE|MIR|MIRb	-	chr6	142302625	142367890	ADGRG6|ENST00000435011.6	+	142302625,142309543,142367565	142302739,142309644,142367890	0.866667
Peyers_patch_female_adult_53_years	chr16	69996417	69996464	69996417	-	RAMPAGE_only	13	13	34	2.869178	4.006071	chr16	69996297	69996477	SINE|MIR|MIRb	+	chr16	69977605	70021930	STRG.81255.4	-	69977605,69978076,69978221,69982349,69982657,69986380,69990596,69996068,69996389,70010750,70011840,70014103,70018046,70021823	69978003,69978112,69978282,69982494,69982757,69986509,69993248,69996226,69996468,70010856,70011929,70014167,70018097,70021930	0.941176
Peyers_patch_female_adult_53_years	chr1	46181617	46181633	46181632	+	RAMPAGE_only	6	8	19	1.603364	3.787144	chr1	46181615	46181833	LINE|L2|L2b	-	chr1	46183432	46184882	TSPAN1|ENST00000482143.5	+	46183432,46184190,46184784	46183683,46184668,46184882	0.789474
Peyers_patch_female_adult_53_years	chr3	32077653	32077687	32077686	-	High_confidence	9	10	36	3.037953	3.668318	chr3	32077310	32077987	LTR|ERV1|MER50B	+	chr3	32046144	32077675	STRG.18831.1	-	32046144,32077395	32046603,32077675	0.833333
Peyers_patch_female_adult_53_years	chr10	80176123	80176132	80176123	-	RAMPAGE_only	4	4	8	0.675101	2.750000	chr10	80176083	80176485	LINE|L1|L1ME4b	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	1.000000
Peyers_patch_female_adult_53_years	chr15	43176947	43176948	43176947	+	RAMPAGE_only	10	10	15	1.265814	3.189898	chr15	43175700	43178014	LINE|L1|L1PA3	+	chr15	43175237	43177920	STRG.76059.1	+	43175237	43177920	0.933333
Peyers_patch_female_adult_53_years	chr9	113375604	113375641	113375640	-	High_confidence	3	3	9	0.759488	2.500000	chr9	113375618	113375696	SINE|MIR|MIRb	+	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	0.888889
Peyers_patch_female_adult_53_years	chr11	134467260	134467265	134467264	+	High_confidence	71	72	134	11.307937	5.077835	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134467269	134505661	STRG.64370.3	+	134467269,134467864,134469486,134482626,134502943	134467615,134467987,134480911,134482730,134505661	0.985075
Peyers_patch_male_adult_37_years	chr13	50083132	50083133	50083132	+	High_confidence	7	7	10	0.601164	2.947703	chr13	50083020	50083238	SINE|MIR|MIRb	-	chr13	50082170	50107218	DLEU1|ENST00000469754.2	+	50082170,50083141,50104703	50082557,50083194,50107218	0.800000
Peyers_patch_male_adult_37_years	chr10	80176131	80176132	80176131	-	RAMPAGE_only	7	8	10	0.601164	2.921928	chr10	80176083	80176485	LINE|L1|L1ME4b	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	0.700000
Peyers_patch_male_adult_37_years	chr16	68381585	68381594	68381585	-	RAMPAGE_only	4	5	9	0.541048	2.725481	chr16	68381481	68381766	LTR|ERVL-MaLR|MLT1I	+	chr16	68361126	68372258	SMPD3|ENST00000568373.5	-	68361126,68361602,68363495,68363776,68364750,68365016,68370858	68361307,68361708,68363559,68363866,68364906,68365092,68372258	0.666667
Peyers_patch_male_adult_37_years	chr8	29735252	29735275	29735252	-	High_confidence	8	8	14	0.841630	3.546594	chr8	29735013	29735262	SINE|MIR|MIR	-	chr8	29673921	29735223	LINC00589|ENST00000518623.5	-	29673921,29677909,29726155,29735170	29674443,29678004,29726423,29735223	0.857143
Peyers_patch_male_adult_37_years	chr8	12565883	12565897	12565883	+	RAMPAGE_only	6	7	10	0.601164	3.121928	chr8	12565799	12565977	LTR|ERVK|HERVK-int	+	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.800000
Peyers_patch_male_adult_37_years	chr2	38083053	38083072	38083071	+	High_confidence	5	5	19	1.142212	3.572431	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.842105
Peyers_patch_male_adult_37_years	chr16	17392236	17392251	17392250	-	RAMPAGE_only	7	8	16	0.961863	3.640224	chr16	17392055	17392565	LINE|L2|L2b	+	chr16	17258833	17369671	STRG.121298.4	-	17258833,17358011,17369593	17259498,17358050,17369671	0.500000
Peyers_patch_male_adult_37_years	chr19	15681692	15681762	15681721	+	High_confidence	6	6	38	2.284425	4.681881	chr19	15681355	15681801	LTR|ERVL|LTR40c	-	chr19	15681500	15697143	CYP4F12|ENST00000546608.1	+	15681500,15683492,15685067,15695935,15696160,15696907	15682514,15684882,15685197,15696069,15696512,15697143	1.000000
Peyers_patch_male_adult_37_years	chr17	69323816	69323817	69323816	-	RAMPAGE_only	6	6	9	0.541048	2.500000	chr17	69323812	69324109	DNA|hAT-Charlie|MER58B	+	chr17	69306762	69327090	STRG.130206.13	-	69306762,69308279,69309261,69313091,69314313,69327051	69306954,69308368,69309423,69313296,69325817,69327090	0.777778
Peyers_patch_male_adult_37_years	chr16	19462265	19462309	19462265	+	RAMPAGE_only	6	6	22	1.322562	3.481715	chr16	19462192	19462405	DNA|hAT-Charlie|MER20	-	chr16	19456516	19498140	TMC5|ENST00000564959.1	+	19456516,19460239,19462502,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19456745,19460334,19462565,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19498140	0.681818
Peyers_patch_male_adult_37_years	chr6	3076929	3076961	3076929	+	High_confidence	4	5	16	0.961863	3.750000	chr6	3076851	3076944	SINE|tRNA|LFSINE_Vert	-	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.812500
Peyers_patch_male_adult_37_years	chr6	11728645	11728658	11728645	-	High_confidence	6	6	13	0.781514	3.418296	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.692308
Peyers_patch_male_adult_37_years	chr3	195696423	195696458	195696423	+	High_confidence	8	8	23	1.382678	3.621176	chr3	195696374	195696623	LINE|L1|L1PA7	+	chr3	195696436	195708504	MUC20-OT1|ENST00000620737.3	+	195696436,195699029,195708133	195696589,195699207,195708504	0.652174
Peyers_patch_male_adult_37_years	chr16	63618044	63618046	63618045	-	High_confidence	82	129	145	8.716883	6.078233	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.758621
Peyers_patch_male_adult_37_years	chr9	114394398	114394413	114394412	-	High_confidence	6	7	10	0.601164	2.921928	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	1.000000
Peyers_patch_male_adult_37_years	chr22	21982427	21982443	21982442	-	High_confidence	3	3	7	0.420815	2.584963	chr22	21982386	21982493	SINE|MIR|MIRb	+	chr22	21975645	21982773	TOP3B|ENST00000434517.1	-	21975645,21982199	21975807,21982773	0.714286
Peyers_patch_male_adult_37_years	chr3	152335094	152335127	152335094	+	RAMPAGE_only	12	12	24	1.442794	4.136842	chr3	152335017	152335180	DNA|DNA|UCON8	+	chr3	152329830	152415109	STRG.33807.12	+	152329830,152414940	152338673,152415109	1.000000
Peyers_patch_male_adult_37_years	chr7	90359628	90359641	90359628	+	High_confidence	2	2	8	0.480931	2.521641	chr7	90359154	90365278	LINE|L1|L1PA6	-	chr7	90359458	90360401	STRG.64578.1	+	90359458	90360401	0.750000
Peyers_patch_male_adult_37_years	chr22	32081704	32081713	32081712	+	RAMPAGE_only	5	5	10	0.601164	2.947703	chr22	32081558	32081768	DNA|hAT-Charlie|MER103C	-	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	0.600000
Peyers_patch_male_adult_37_years	chr16	29760809	29760853	29760848	+	High_confidence	94	101	539	32.402759	7.376346	chr16	29760474	29761018	LTR|ERVL-MaLR|MLT1G1	+	chr16	29760760	29805356	STRG.122673.1	+	29760760,29779259,29779504,29780103,29784922,29785587,29796892,29798373,29798592,29798974,29799263,29799627,29799912,29802768,29803448,29803997,29804813,29805114,29805262	29760949,29779321,29779637,29780637,29785492,29790829,29797088,29798501,29798747,29799184,29799494,29799781,29800048,29802937,29803608,29804065,29805026,29805174,29805356	0.836735
Peyers_patch_male_adult_37_years	chr12	6356250	6356278	6356277	-	High_confidence	9	9	20	1.202329	3.884184	chr12	6356219	6356436	LINE|L2|L2b	+	chr12	6355391	6356293	SCNN1A|ENST00000536087.1	-	6355391,6355776	6355435,6356293	0.950000
Peyers_patch_male_adult_37_years	chr6	31186398	31186530	31186398	-	High_confidence	66	70	154	9.257931	5.858202	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31167430	31186528	STRG.54021.10	-	31167430,31177638	31174270,31186528	0.987013
Peyers_patch_male_adult_37_years	chr22	50387650	50387658	50387650	+	RAMPAGE_only	2	3	8	0.480931	2.750000	chr22	50387583	50387737	DNA|hAT-Blackjack|MER63B	-	chr22	50372071	50444391	PPP6R2|ENST00000216061.9	+	50372071,50388985,50391866,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50436987,50437505,50437842,50438173,50438598,50439700,50439960,50440800,50443865,50444198	50372150,50389111,50392015,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437068,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50444391	0.500000
Peyers_patch_male_adult_37_years	chr3	25737334	25737402	25737334	-	High_confidence	1	1	9	0.541048	3.000000	chr3	25737106	25737338	SINE|MIR|MIRb	-	chr3	25719278	25736346	NGLY1|ENST00000496726.5	-	25719278,25720013,25729132,25733871	25719635,25720191,25729318,25736346	0.888889
Peyers_patch_male_adult_37_years	chr1	23417904	23417997	23417917	-	High_confidence	20	20	102	6.131876	5.745113	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23380534	23418298	STRG.1525.2	-	23380534,23387272,23393878,23397544,23397791,23408663,23417248,23417903	23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418298	0.980392
Peyers_patch_male_adult_37_years	chr1	77169312	77169320	77169312	-	RAMPAGE_only	4	4	9	0.541048	2.947703	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77088989	77219426	PIGK|ENST00000370812.7	-	77088989,77122274,77154448,77161294,77161593,77163845,77166718,77169259,77206639,77210435,77219309	77092490,77122359,77154621,77161405,77161711,77163942,77166830,77169395,77206731,77210489,77219426	0.888889
Peyers_patch_male_adult_37_years	chr8	61647197	61647208	61647207	-	High_confidence	2	2	7	0.420815	2.584963	chr8	61646951	61647212	LINE|L2|L2a	+	chr8	61626140	61646872	ASPH|ENST00000519678.5	-	61626140,61633682,61637946,61642887,61643385,61643944,61644599,61646749	61626280,61633727,61638003,61642920,61643433,61644001,61644632,61646872	0.714286
Peyers_patch_male_adult_37_years	chr2	240619005	240619058	240619005	+	RAMPAGE_only	7	7	13	0.781514	3.546594	chr2	240617462	240619377	LINE|L1|L1MC5	-	chr2	240609545	240631170	STRG.25193.11	+	240609545,240616975,240618887,240629948	240616511,240617393,240623138,240631170	1.000000
Peyers_patch_male_adult_37_years	chr22	49657452	49657463	49657452	-	High_confidence	2	2	8	0.480931	3.000000	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49436223	49657457	C22orf34|ENST00000416411.1	-	49436223,49440875,49657404	49436375,49441212,49657457	0.625000
Peyers_patch_male_adult_37_years	chr9	128684459	128684493	128684459	-	High_confidence	18	18	97	5.831294	5.792889	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683606	128684451	STRG.82195.1	-	128683606	128684451	0.948454
Peyers_patch_male_adult_37_years	chr2	237546421	237546424	237546423	+	High_confidence	4	7	9	0.541048	2.750000	chr2	237546379	237546439	DNA|hAT|MER53	-	chr2	237546404	237553843	MLPH|ENST00000477457.1	+	237546404,237549220,237552336,237553565	237546683,237549278,237552437,237553843	0.888889
Peyers_patch_male_adult_37_years	chr8	100336260	100336309	100336308	+	High_confidence	24	24	100	6.011644	5.264935	chr8	100336300	100336359	DNA|hAT-Charlie|MER102b	-	chr8	100336277	100336731	STRG.73533.1	+	100336277	100336731	0.870000
Peyers_patch_male_adult_37_years	chr11	65181215	65181255	65181215	+	High_confidence	8	8	42	2.524890	4.443943	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.952381
Peyers_patch_male_adult_37_years	chr1	203429182	203429251	203429250	-	High_confidence	213	228	464	27.894026	7.350266	chr1	203429152	203429582	LTR|ERVK|LTR22A	-	chr1	203421391	203429281	STRG.10951.2	-	203421391	203429281	0.943966
Peyers_patch_male_adult_37_years	chr7	151806657	151806699	151806679	+	High_confidence	5	6	22	1.322562	4.186704	chr7	151806685	151806943	SINE|Alu|AluSz6	+	chr7	151806615	151807642	AC093583.1|ENST00000481153.3	+	151806615,151807442	151807036,151807642	0.863636
Peyers_patch_male_adult_37_years	chr13	22040971	22040972	22040971	+	High_confidence	22	22	27	1.623144	4.315824	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.814815
Peyers_patch_male_adult_37_years	chr1	150173308	150173348	150173347	+	High_confidence	21	22	41	2.464774	4.543852	chr1	150172963	150173624	LTR|ERVL|MER77	-	chr1	150173469	150180394	STRG.7882.1	+	150173469,150173729,150180122	150173600,150173814,150180394	0.658537
Peyers_patch_male_adult_37_years	chr12	6493553	6493590	6493553	-	High_confidence	9	10	28	1.683260	4.236369	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	0.964286
Peyers_patch_male_adult_37_years	chr3	108375776	108375777	108375776	+	RAMPAGE_only	12	12	18	1.082096	3.852169	chr3	108375646	108375863	LTR|ERVL|LTR33	-	chr3	108353655	108378285	HHLA2|ENST00000482099.1	+	108353655,108355114,108357843,108362341,108375749,108376492	108353780,108355381,108358161,108362446,108375800,108378285	0.888889
Peyers_patch_male_adult_37_years	chrX	20204040	20204080	20204049	-	RAMPAGE_only	5	5	15	0.901747	2.896292	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.933333
Peyers_patch_male_adult_37_years	chr3	124631242	124631253	124631252	+	RAMPAGE_only	6	6	14	0.841630	3.664498	chr3	124631189	124632228	LINE|L2|L2a	+	chr3	124584681	124650915	KALRN|ENST00000454902.1	+	124584681,124632419,124633848,124650807	124584906,124632703,124633953,124650915	0.785714
Peyers_patch_male_adult_37_years	chr11	65441763	65442117	65441842	+	RAMPAGE_only	135	138	1745	104.903181	7.414783	chr11	65441504	65441864	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998854
Peyers_patch_male_adult_37_years	chr11	64242592	64242620	64242611	+	High_confidence	4	4	14	0.841630	3.392747	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.857143
Peyers_patch_male_adult_37_years	chr17	50271485	50271488	50271485	+	High_confidence	78	78	140	8.416301	6.039444	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	0.942857
Peyers_patch_male_adult_37_years	chr2	238300064	238300106	238300064	-	High_confidence	4	4	21	1.262445	3.616349	chr2	238299957	238300152	LTR|ERVL|ERV3-16A3_I-int	+	chr2	238295391	238300620	AC012485.2|ENST00000437372.2	-	238295391,238298639,238299801,238300511	238295740,238298776,238300188,238300620	0.761905
Peyers_patch_male_adult_37_years	chr2	113184962	113185038	113184962	+	High_confidence	5	5	40	2.404657	4.505752	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.925000
Peyers_patch_male_adult_37_years	chr6	2273091	2273126	2273091	+	RAMPAGE_only	3	3	12	0.721397	3.418296	chr6	2272484	2273172	LTR|ERV1|LTR78	+	chr6	2245776	2283774	GMDS-DT|ENST00000456943.6	+	2245776,2248836,2263600,2269697,2271815,2283498	2245930,2248926,2263684,2269799,2273417,2283774	0.750000
Peyers_patch_male_adult_37_years	chr20	47339792	47339821	47339792	-	RAMPAGE_only	5	6	20	1.202329	3.821928	chr20	47339485	47339779	SINE|Alu|AluY	-	chr20	47310102	47351877	ZMYND8|ENST00000446894.5	-	47310102,47347855,47351709	47310204,47347926,47351877	0.550000
Peyers_patch_male_adult_37_years	chr1	212792439	212792445	212792444	-	High_confidence	5	8	13	0.781514	2.855389	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.769231
Peyers_patch_male_adult_37_years	chrX	103718228	103718277	103718276	-	High_confidence	7	8	36	2.164192	4.900712	chrX	103718252	103718364	LINE|L2|L2a	+	chrX	103706713	103718265	STRG.150029.1	-	103706713,103713519,103718144	103707514,103713669,103718265	0.750000
Peyers_patch_male_adult_37_years	chr5	39448700	39448723	39448700	-	High_confidence	140	173	403	24.226924	6.443026	chr5	39448488	39449045	LTR|ERVL|MLT2B3	-	chr5	39371737	39448720	STRG.44780.2	-	39371737,39375013,39375996,39376649,39381453,39382617,39388304,39388798,39389096,39389851,39390443,39392364,39393253,39394229,39448575	39373425,39375084,39376106,39377282,39381616,39383271,39388367,39388852,39389123,39389932,39390575,39392463,39393393,39394421,39448720	0.863524
Peyers_patch_male_adult_37_years	chr22	23700730	23700737	23700736	-	RAMPAGE_only	5	7	11	0.661281	3.095795	chr22	23700074	23701270	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	1.000000
Peyers_patch_male_adult_37_years	chr3	195722489	195722528	195722495	+	RAMPAGE_only	45	48	127	7.634787	5.636367	chr3	195722358	195722503	SINE|MIR|MIRc	-	chr3	195720994	195733504	MUC20|ENST00000320736.10	+	195720994,195724679,195725672,195729647,195733149	195721083,195725159,195726572,195729739,195733504	0.511811
Peyers_patch_male_adult_37_years	chr7	100037694	100037730	100037694	+	RAMPAGE_only	4	6	17	1.021979	3.280639	chr7	100037735	100038031	SINE|Alu|AluSx3	+	chr7	100023407	100041688	ZKSCAN1|ENST00000620510.1	+	100023407,100023551,100024153,100029860,100030248,100033304	100023461,100023932,100024307,100029952,100030375,100041688	0.882353
Peyers_patch_male_adult_37_years	chr2	219222057	219222094	219222057	-	High_confidence	3	3	12	0.721397	3.095795	chr2	219221951	219222030	SINE|MIR|MIRb	-	chr2	219220208	219222248	ATG9A|ENST00000475339.1	-	219220208,219220746,219221079,219222049	219220452,219220892,219221302,219222248	0.916667
Peyers_patch_male_adult_37_years	chr11	64620606	64620607	64620606	-	High_confidence	5	5	8	0.480931	2.807355	chr11	64620584	64620687	SINE|tRNA-Deu|AmnSINE2	-	chr11	64620003	64620643	STRG.93339.1	-	64620003	64620643	0.750000
Peyers_patch_male_adult_37_years	chr2	28600805	28600818	28600817	+	RAMPAGE_only	3	3	8	0.480931	2.521641	chr2	28600862	28601098	LINE|CR1|L3	+	chr2	28496118	28643152	PLB1|ENST00000404858.5	+	28496118,28516807,28518465,28519704,28525266,28525904,28529316,28529727,28532107,28538285,28539098,28540365,28541706,28543211,28548859,28550009,28552927,28563040,28565279,28566795,28573196,28578106,28579626,28582404,28585760,28589449,28589674,28590004,28591132,28591699,28592660,28593680,28598004,28598651,28600808,28601251,28601898,28602820,28603965,28604654,28605852,28606495,28614030,28617726,28618340,28620264,28620599,28620878,28625056,28626427,28628562,28629093,28630585,28632035,28632943,28640926,28642857	28496169,28516869,28518532,28519763,28525307,28525945,28529407,28529779,28532194,28538381,28539178,28540441,28541811,28543268,28548931,28550084,28552991,28563099,28565353,28566839,28573305,28578158,28579707,28582505,28585842,28589554,28589770,28590076,28591171,28591760,28592719,28593754,28598048,28598760,28600860,28601332,28601964,28602921,28604047,28604759,28605948,28606567,28614096,28617787,28618399,28620332,28620643,28620978,28625108,28626508,28628628,28629185,28630664,28632140,28633039,28641001,28643152	0.500000
Peyers_patch_male_adult_37_years	chrX	118727147	118727200	118727199	+	High_confidence	5	6	23	1.382678	4.201841	chrX	118727146	118727201	SINE|MIR|MIRc	-	chrX	118727135	118758872	STRG.150429.3	+	118727135,118741016,118746953,118749657,118758054,118758864	118727726,118741156,118747092,118749778,118758242,118758872	0.826087
Peyers_patch_male_adult_37_years	chr3	71372432	71372480	71372476	-	RAMPAGE_only	3	3	13	0.781514	3.584963	chr3	71372321	71372677	LINE|L2|L2c	+	chr3	70959224	71359202	FOXP1|ENST00000648710.1	-	70959224,70965889,70970735,70972554,70976940,70977642,70977827,70987993,71000971,71015548,71041327,71046941,71052536,71053635,71112535,71198201,71299819,71359149	70959391,70966056,70970805,70972676,70977042,70977722,70978029,70988077,71001059,71015653,71041532,71047095,71052623,71053773,71112637,71198392,71299880,71359202	0.615385
Peyers_patch_male_adult_37_years	chr11	63563653	63563692	63563653	-	High_confidence	2	2	13	0.781514	3.418296	chr11	63563436	63563737	SINE|Alu|AluY	+	chr11	63552769	63563383	HRASLS2|ENST00000255695.1	-	63552769,63558391,63560084,63563315	63553065,63558660,63560193,63563383	0.692308
Peyers_patch_male_adult_37_years	chr2	240616469	240616510	240616509	+	RAMPAGE_only	2	3	8	0.480931	2.750000	chr2	240616383	240616624	LINE|L1|L1MC5	-	chr2	240609545	240631170	STRG.25193.11	+	240609545,240616975,240618887,240629948	240616511,240617393,240623138,240631170	0.875000
Peyers_patch_male_adult_37_years	chr5	140655854	140655986	140655985	+	RAMPAGE_only	12	19	87	5.230130	5.096559	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.942529
Peyers_patch_male_adult_37_years	chr7	102567281	102567324	102567323	-	High_confidence	3	4	14	0.841630	3.546594	chr7	102566917	102567301	LTR|ERVL-MaLR|MSTA	-	chr7	102539675	102567070	POLR2J3|ENST00000511773.5	-	102539675,102540014,102541092,102541500,102543524,102544705,102566996	102539726,102540091,102541303,102541662,102543661,102544776,102567070	0.642857
Peyers_patch_male_adult_37_years	chr7	151066344	151066345	151066344	+	RAMPAGE_only	6	6	6	0.360699	2.584963	chr7	151066302	151066365	SINE|MIR|MIR	-	chr7	151062651	151076527	SLC4A2|NM_001199694.1	+	151062651,151064201,151064525,151064847,151066516,151066850,151067873,151069946,151070180,151070456,151070726,151071071,151071389,151071688,151071941,151074038,151074398,151074674,151075254,151075605,151076012,151076286	151063189,151064367,151064767,151064966,151066761,151066993,151068054,151070082,151070346,151070571,151070911,151071297,151071605,151071837,151072136,151074293,151074488,151074841,151075508,151075775,151076186,151076527	0.833333
Peyers_patch_male_adult_37_years	chr2	240618456	240618457	240618456	+	High_confidence	9	9	12	0.721397	3.095795	chr2	240617462	240619377	LINE|L1|L1MC5	-	chr2	240618942	240631258	GPR35|ENST00000430267.2	+	240618942,240629948	240619031,240631258	0.583333
Peyers_patch_male_adult_37_years	chr8	133255347	133255380	133255369	-	High_confidence	4	4	12	0.721397	3.277613	chr8	133255180	133255391	SINE|MIR|MIRb	+	chr8	133237175	133256228	NDRG1|ENST00000519278.5	-	133237175,133242022,133244354,133246615,133247874,133248714,133250439,133254538	133239119,133242074,133244390,133246663,133247926,133248771,133250543,133256228	0.916667
Peyers_patch_male_adult_37_years	chr6	79631273	79631363	79631302	+	High_confidence	54	54	265	15.930856	6.240331	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.996226
Peyers_patch_male_adult_37_years	chr2	240617389	240617390	240617389	+	RAMPAGE_only	23	24	28	1.683260	4.351823	chr2	240617180	240617426	LTR|ERVL-MaLR|MLT1F2	+	chr2	240618942	240631258	GPR35|ENST00000430267.2	+	240618942,240629948	240619031,240631258	0.785714
Peyers_patch_male_adult_37_years	chr3	108295736	108295754	108295736	+	High_confidence	3	3	11	0.661281	3.095795	chr3	108295771	108295812	DNA|hAT-Ac|OldhAT1	+	chr3	108296489	108378285	HHLA2|NM_001282558.1	+	108296489,108310654,108328269,108351787,108353426,108355114,108357843,108362341,108376492,108377257	108296599,108310741,108328347,108351877,108353780,108355381,108358161,108362446,108376557,108378285	0.636364
Peyers_patch_male_adult_37_years	chr11	64807557	64807613	64807612	-	RAMPAGE_only	5	5	13	0.781514	3.418296	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64804333	64810132	MEN1|ENST00000377313.5	-	64804333,64805033,64805634,64806231,64807010,64807178,64807551,64807890,64809649	64804816,64805198,64805770,64806368,64807098,64807219,64807680,64808099,64810132	0.923077
Peyers_patch_male_adult_37_years	chr3	195688578	195688582	195688578	+	High_confidence	6	12	19	1.142212	3.572431	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688520	195708807	MUC20-OT1|ENST00000630417.2	+	195688520,195689338,195699029,195708133,195708746	195688797,195689438,195699207,195708435,195708807	0.842105
Peyers_patch_male_adult_37_years	chr1	216905282	216905378	216905377	-	RAMPAGE_only	41	41	194	11.662589	6.610586	chr1	216905163	216905699	LINE|L2|L2b	+	chr1	216505489	216939670	ESRRG|ENST00000487276.5	-	216505489,216519151,216564218,216567987,216650972,216677075,216865060,216936661,216939581	216507183,216519421,216564380,216568098,216651089,216677491,216865178,216936699,216939670	0.536082
Peyers_patch_male_adult_37_years	chrX	66258661	66258697	66258696	+	RAMPAGE_only	7	7	13	0.781514	3.392747	chrX	66258313	66258772	LINE|L2|L2c	-	chrX	66254713	66267383	STRG.148813.6	+	66254713,66256104,66260099,66263643,66266439	66255141,66258979,66260262,66263688,66267383	0.846154
Peyers_patch_male_adult_37_years	chr6	56876095	56876147	56876135	-	High_confidence	41	44	191	11.482239	5.863584	chr6	56876105	56876750	LINE|L2|L2a	+	chr6	56535188	56876140	STRG.55283.3	-	56535188,56536778,56552183,56555344,56557318,56560293,56561307,56562137,56568468,56569855,56572099,56572746,56573678,56578813,56592181,56593662,56597739,56598475,56600068,56610426,56611507,56614355,56624529,56625156,56627203,56627998,56629249,56630244,56631210,56631882,56632853,56634131,56634461,56634800,56635588,56636556,56639258,56639449,56639695,56639928,56640142,56641946,56642409,56645865,56646086,56648569,56650925,56651131,56670640,56699652,56701887,56704279,56735227,56851396,56875995	56535292,56536940,56553655,56555840,56557518,56560423,56561549,56562200,56568595,56570012,56572266,56573064,56573887,56578937,56592358,56594193,56598006,56598709,56600221,56610562,56611596,56614484,56624628,56625264,56627287,56628161,56629443,56630383,56631389,56632040,56633037,56634258,56634616,56634953,56635714,56636652,56639363,56639611,56639773,56640057,56640605,56642101,56642503,56645993,56646182,56648689,56651032,56651244,56670807,56699745,56701965,56704369,56735289,56851604,56876140	0.910995
Peyers_patch_male_adult_37_years	chr11	130199041	130199048	130199047	+	RAMPAGE_only	10	12	29	1.743377	3.348437	chr11	130199074	130199268	DNA|hAT-Tip100|MER91A	+	chr11	130159786	130210362	ST14|NM_021978.3	+	130159786,130188113,130188529,130188868,130189738,130190112,130190453,130194148,130194639,130196338,130196569,130197840,130198307,130198507,130198946,130199950,130208409,130209441,130209661	130160060,130188273,130188657,130188939,130189896,130190148,130190694,130194288,130194737,130196448,130196700,130197945,130198418,130198621,130199069,130200137,130208684,130209578,130210362	0.931034
Peyers_patch_male_adult_37_years	chr20	37344707	37344725	37344712	+	High_confidence	59	94	191	11.482239	6.855369	chr20	37344715	37344779	SINE|MIR|MIRc	+	chr20	37344734	37400870	STRG.140840.5	+	37344734,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114	37345229,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400870	0.633508
Peyers_patch_male_adult_37_years	chr4	103085353	103085385	103085384	-	High_confidence	2	2	7	0.420815	2.807355	chr4	103085151	103085336	DNA|hAT-Charlie|MER58A	-	chr4	103066458	103085829	SLC9B2|ENST00000508136.1	-	103066458,103067460,103082080,103082870,103085348,103085698	103066507,103067592,103082173,103082929,103085462,103085829	0.857143
Peyers_patch_male_adult_37_years	chr16	2524767	2524776	2524767	+	RAMPAGE_only	20	31	56	3.366520	4.860829	chr16	2524623	2524807	LINE|L1|HAL1	-	chr16	2527569	2528495	AMDHD2|ENST00000570028.5	+	2527569,2528059,2528235,2528451	2527985,2528148,2528380,2528495	0.714286
Peyers_patch_male_adult_37_years	chr9	74848147	74848164	74848147	-	RAMPAGE_only	5	6	12	0.721397	2.913977	chr9	74847872	74848586	DNA|TcMar-Tigger|MER44C	-	chr9	74722494	74887347	TRPM6|ENST00000361255.7	-	74722494,74728238,74732684,74738406,74739366,74739722,74742560,74744094,74747888,74750663,74752276,74755352,74761695,74761998,74771702,74775882,74782361,74782678,74785873,74788613,74792623,74796740,74800253,74801897,74803793,74808033,74810814,74812298,74816668,74816891,74820303,74821668,74827777,74833997,74840023,74842165,74855526,74858668,74887230	74724746,74728345,74732736,74738612,74739449,74740009,74742626,74744145,74747914,74750722,74752368,74755473,74761808,74763134,74771835,74776076,74782476,74782853,74786125,74788742,74792770,74796893,74800482,74802175,74803886,74808174,74810868,74812433,74816769,74816964,74820427,74821837,74827949,74834122,74840237,74842343,74855565,74858748,74887347	0.583333
Peyers_patch_male_adult_37_years	chr12	111692579	111692626	111692588	+	RAMPAGE_only	3	3	11	0.661281	2.663533	chr12	111692267	111692611	LINE|L2|L2c	-	chr12	111686097	111757097	ACAD10|ENST00000313698.8	+	111686097,111692696,111702161,111705737,111709525,111712497,111715820,111721670,111727961,111729805,111733922,111736830,111744642,111746143,111747048,111747294,111748316,111749172,111753771,111755667,111756332	111686239,111692896,111702310,111705932,111709684,111712657,111715962,111721739,111728143,111729956,111734068,111737004,111745043,111746284,111747186,111747385,111748475,111749345,111753915,111755745,111757097	1.000000
Peyers_patch_male_adult_37_years	chr11	63563627	63563628	63563627	-	High_confidence	24	24	34	2.043959	4.354852	chr11	63563436	63563737	SINE|Alu|AluY	+	chr11	63552769	63563383	HRASLS2|ENST00000255695.1	-	63552769,63558391,63560084,63563315	63553065,63558660,63560193,63563383	0.882353
Peyers_patch_male_adult_37_years	chr10	68307085	68307128	68307127	-	High_confidence	8	8	34	2.043959	3.799979	chr10	68307029	68307329	SINE|Alu|AluSx1	-	chr10	68287026	68306879	PBLD|ENST00000277795.8	-	68287026,68292009,68292128,68296885,68306760	68289019,68292039,68292238,68296985,68306879	0.647059
Peyers_patch_male_adult_37_years	chr3	142159985	142160012	142160011	-	RAMPAGE_only	93	93	230	13.826780	4.115618	chr3	142159854	142160147	SINE|Alu|AluSx	-	chr3	142157526	142225607	GK5|NM_001039547.2	-	142157526,142170324,142171418,142172352,142177481,142181460,142182922,142185928,142186193,142186451,142187703,142198801,142204694,142213525,142215598,142225308	142165770,142170458,142171478,142172456,142177576,142181565,142183049,142185989,142186267,142186513,142187779,142198933,142204788,142213601,142215692,142225607	0.982609
Peyers_patch_male_adult_37_years	chr3	37987981	37987994	37987989	+	High_confidence	287	312	1166	70.095764	6.901514	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38010819	STRG.27551.5	+	37988058,37993586,37993897,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38002862,38004254,38005791,38006180,38006448	37988238,37993732,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002787,38003313,38004399,38005974,38006252,38010819	0.752144
Peyers_patch_male_adult_37_years	chr7	99659261	99659568	99659350	-	RAMPAGE_only	40	43	350	21.040753	7.032010	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648199	99660602	STRG.65823.23	-	99648199,99650072,99652552	99648400,99650232,99660602	0.991429
Peyers_patch_male_adult_37_years	chrX	66172263	66172282	66172281	+	RAMPAGE_only	10	10	31	1.863610	4.389365	chrX	66172197	66172316	LINE|CR1|L3b	-	chrX	66170545	66208246	HEPH|ENST00000425114.1	+	66170545,66172354,66173588,66188358,66189683,66192129,66193501,66195097,66197811,66198877,66200539,66203363,66207194,66208114	66170737,66172599,66173801,66188541,66189938,66192298,66193638,66195229,66197894,66199028,66200752,66203577,66207334,66208246	0.903226
Peyers_patch_male_adult_37_years	chr14	24423141	24423187	24423184	+	High_confidence	71	71	356	21.401451	6.187301	chr14	24422287	24423820	LINE|L2|L2b	-	chr14	24423146	24437425	STRG.109399.4	+	24423146,24430713,24431462,24432721,24432935,24436071,24436387,24437035	24423476,24430931,24432610,24432852,24433032,24436179,24436489,24437425	0.921348
Peyers_patch_male_adult_37_years	chr15	42675612	42675613	42675612	+	High_confidence	7	7	9	0.541048	2.947703	chr15	42675586	42675640	LINE|L2|L2a	+	chr15	42675495	42718645	STRG.115868.1	+	42675495,42675871,42681421,42682103,42684115,42694527,42695139,42695742,42716676,42716926,42717730,42717976,42718434	42675746,42675975,42681612,42682575,42694342,42694725,42695323,42695880,42716764,42717048,42717795,42718179,42718645	1.000000
Peyers_patch_male_adult_37_years	chr3	129256129	129256143	129256129	+	RAMPAGE_only	2	2	8	0.480931	2.500000	chr3	129256170	129256401	DNA|hAT|MamRep38	+	chr3	129249631	129277771	COPG1|ENST00000515725.5	+	129249631,129250681,129252280,129252622,129254667,129254984,129256067,129257469,129257726,129260332,129260618,129263903,129265548,129267023,129267936,129268494,129268931,129271766,129272243,129272806,129274837,129275193,129277293	129249746,129250734,129252361,129252955,129254743,129255077,129256154,129257627,129257860,129260400,129260807,129263999,129265792,129267099,129268040,129268620,129269000,129271909,129272415,129272904,129274976,129275292,129277771	0.875000
Peyers_patch_male_adult_37_years	chr18	9588154	9588197	9588180	-	RAMPAGE_only	2	2	8	0.480931	2.750000	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9547712	9614505	PPP4R1|ENST00000285124.12	-	9547712,9549196,9550051,9550277,9553321,9557220,9559418,9561979,9562921,9563377,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9595017,9614225,9614477	9547952,9549338,9550186,9550398,9553422,9557382,9559604,9562075,9563046,9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9595102,9614270,9614505	1.000000
Peyers_patch_male_adult_37_years	chr19	45524130	45524140	45524130	+	RAMPAGE_only	6	6	12	0.721397	3.418296	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.916667
Peyers_patch_male_adult_37_years	chr16	66944462	66944826	66944462	+	RAMPAGE_only	49	53	455	27.352978	6.939423	chr16	66944463	66944776	SINE|Alu|AluSq	+	chr16	66934470	66945096	CES2|NR_036684.1	+	66934470,66938036,66939216,66940221,66940436,66941123,66941505,66941767,66942104,66942647,66943298,66943838	66935976,66938241,66939358,66940355,66940695,66941222,66941646,66941848,66942249,66942785,66943371,66945096	0.982418
Peyers_patch_male_adult_37_years	chr7	99664744	99664768	99664744	-	RAMPAGE_only	5	6	12	0.721397	3.418296	chr7	99664455	99665137	LINE|L1|L1MB7	+	chr7	99648199	99679953	STRG.65823.12	-	99648199,99650072,99652552,99660498,99662815,99666600,99666951,99672579,99676114,99679825	99648400,99650232,99652779,99660659,99665314,99666689,99667065,99674585,99676208,99679953	1.000000
Peyers_patch_male_adult_37_years	chr7	123190590	123190610	123190609	-	RAMPAGE_only	3	3	6	0.360699	2.584963	chr7	123190168	123190808	LTR|ERVL|LTR69	+	chr7	123113533	123199971	SLC13A1|NM_001324400.1	-	123113533,123117470,123119080,123123125,123125568,123128844,123129382,123134409,123147158,123148405,123149443,123168373,123168503,123169147,123171767,123180972,123190457,123199847	123115655,123117608,123119242,123123235,123125675,123128946,123129481,123134529,123147310,123148573,123149620,123168422,123168561,123169335,123171904,123181101,123190613,123199971	0.666667
Peyers_patch_male_adult_37_years	chr1	33021382	33021417	33021382	-	RAMPAGE_only	5	9	40	2.404657	4.343943	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.950000
Peyers_patch_male_adult_37_years	chr2	61962607	61962626	61962620	+	RAMPAGE_only	2	3	8	0.480931	2.807355	chr2	61962268	61962878	LTR|ERVL|MER77B	+	chr2	61905646	62136247	COMMD1|ENST00000311832.5	+	61905646,62000700,62135830	61905858,62000982,62136247	0.875000
Peyers_patch_male_adult_37_years	chr1	98698888	98698891	98698888	+	RAMPAGE_only	4	4	9	0.541048	2.750000	chr1	98698937	98699054	LINE|L2|L2a	+	chr1	98661722	98760500	SNX7|ENST00000306121.7	+	98661722,98684884,98691074,98691534,98695517,98698705,98701816,98738236,98760053	98661911,98685067,98691185,98691699,98695716,98698905,98701903,98738389,98760500	0.888889
Peyers_patch_male_adult_37_years	chr2	31368542	31368570	31368569	-	RAMPAGE_only	5	5	14	0.841630	3.235926	chr2	31368387	31368532	LINE|CR1|L3	-	chr2	31334320	31414715	XDH|ENST00000379416.3	-	31334320,31337640,31339488,31341328,31342182,31344683,31346768,31347521,31348267,31348898,31349685,31350031,31364157,31365456,31365975,31366869,31367960,31368540,31370354,31372227,31373872,31375379,31377052,31379866,31381632,31383000,31383754,31386413,31387810,31388226,31397667,31398572,31401219,31403047,31405906,31414624	31336008,31337817,31339677,31341394,31342297,31344736,31346843,31347650,31348363,31348980,31349831,31350223,31364244,31365544,31366109,31366994,31368057,31368660,31370478,31372397,31373956,31375554,31377237,31379976,31381726,31383152,31383847,31386555,31387897,31388295,31397729,31398699,31401328,31403144,31405964,31414715	0.928571
Peyers_patch_male_adult_37_years	chr12	53467737	53467757	53467737	+	High_confidence	10	10	18	1.082096	3.572469	chr12	53467721	53467786	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.944444
Peyers_patch_male_adult_37_years	chr8	2726956	2726957	2726956	+	High_confidence	8	8	11	0.661281	2.721928	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.545455
Peyers_patch_male_adult_37_years	chr10	105644496	105644562	105644500	+	High_confidence	6	6	40	2.404657	4.754378	chr10	105644158	105644712	LTR|ERVL|MLT2B3	+	chr10	105644310	105682202	STRG.88749.1	+	105644310,105663803,105677192	105644626,105663936,105682202	0.650000
Peyers_patch_male_adult_37_years	chr19	55094793	55094821	55094820	-	High_confidence	3	4	13	0.781514	3.418296	chr19	55094806	55095145	LINE|L2|L2a	-	chr19	55090913	55094796	PPP1R12C|ENST00000591938.5	-	55090913,55091649,55091858,55092221,55092441,55092621,55093185,55094344,55094660	55091558,55091700,55091909,55092326,55092544,55092653,55093233,55094435,55094796	0.846154
Peyers_patch_male_adult_37_years	chr12	106985221	106985247	106985246	-	High_confidence	3	3	7	0.420815	2.584963	chr12	106985200	106985407	LINE|L2|L2c	+	chr12	106978455	106985286	MTERF2|ENST00000550736.1	-	106978455,106980620,106985114	106978771,106980713,106985286	0.571429
Peyers_patch_male_adult_37_years	chr19	5680235	5680261	5680235	-	High_confidence	2	2	6	0.360699	2.584963	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
Peyers_patch_male_adult_37_years	chr13	98719848	98719900	98719856	-	RAMPAGE_only	17	17	77	4.628966	4.967669	chr13	98719730	98719863	DNA|hAT-Charlie|MER58A	-	chr13	98683800	98752654	STRG.108445.2	-	98683800,98686189,98687580,98688247,98688469,98702479,98704288,98706133,98708685,98709571,98709741,98709866,98711853,98712497,98715877,98719236,98721803,98723911,98726122,98726367,98726842,98752594	98684915,98686297,98687724,98688356,98688577,98702529,98704435,98706253,98708767,98709660,98709774,98709911,98711943,98712584,98715960,98721585,98721903,98724031,98726264,98726449,98726859,98752654	0.961039
Peyers_patch_male_adult_37_years	chr16	2770026	2770140	2770063	+	High_confidence	15	28	89	5.350363	5.703207	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2770934	SRRM2|ENST00000574866.1	+	2769894,2770351,2770603,2770857	2770227,2770465,2770717,2770934	0.606742
Peyers_patch_male_adult_37_years	chr11	134467260	134467265	134467264	+	RAMPAGE_only	59	59	101	6.071760	5.415731	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134466184	134487915	AP004608.1|ENST00000528482.6	+	134466184,134467864,134480844,134482626,134485961	134467615,134467987,134480911,134482730,134487915	0.831683
Peyers_patch_male_adult_37_years	chr2	200889135	200889157	200889153	-	High_confidence	11	13	47	2.825472	5.159325	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889154	PPIL3|ENST00000392283.8	-	200870955,200876918,200881420,200882341,200885697,200887612,200888955	200871521,200877037,200881488,200882435,200885772,200887685,200889154	0.851064
Peyers_patch_male_adult_37_years	chr8	29148576	29148608	29148585	-	RAMPAGE_only	3	3	14	0.841630	3.546594	chr8	29148400	29148564	SINE|Alu|FAM	-	chr8	29067278	29168070	STRG.70717.2	-	29067278,29071619,29075280,29092744,29099132,29108138,29109370,29109917,29113462,29116830,29118867,29122590,29123365,29124023,29126481,29127121,29130532,29132307,29134039,29140062,29140467,29142156,29146377,29147391,29148576,29150296,29155725,29160732,29165661,29167372	29070766,29072316,29075343,29092878,29099241,29108192,29109511,29110070,29113555,29117007,29118992,29122646,29123492,29124123,29126511,29127268,29130665,29132465,29134210,29140191,29140617,29142303,29146540,29147602,29148767,29150383,29155856,29160867,29165772,29168070	0.857143
Peyers_patch_male_adult_37_years	chr16	19449555	19449600	19449596	+	RAMPAGE_only	12	14	88	5.290246	5.569616	chr16	19449636	19450005	LTR|ERVL-MaLR|THE1D	+	chr16	19456449	19499113	TMC5|ENST00000219821.9	+	19456449,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19457016,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	0.704545
Peyers_patch_male_adult_37_years	chr22	50582180	50582181	50582180	-	High_confidence	10	10	13	0.781514	3.418296	chr22	50582144	50582195	SINE|MIR|MIRb	+	chr22	50578965	50582820	CHKB|ENST00000479003.5	-	50578965,50579425,50579726,50579973,50580189,50580564,50581419,50581748	50579255,50579507,50579830,50580082,50580416,50580660,50581553,50582820	0.769231
Peyers_patch_male_adult_37_years	chr16	57432652	57432666	57432652	-	RAMPAGE_only	2	2	9	0.541048	3.169925	chr16	57432639	57432737	SINE|MIR|MIR3	+	chr16	57430257	57447366	CIAPIN1|ENST00000567751.5	-	57430257,57431150,57432486,57440952,57447341	57430339,57431266,57432560,57440983,57447366	0.666667
Peyers_patch_male_adult_37_years	chrX	32854142	32854151	32854142	-	RAMPAGE_only	6	7	18	1.082096	3.794653	chrX	32851464	32854639	LINE|L1|L1MA3	+	chrX	32573610	32849802	DMD|ENST00000447523.1	-	32573610,32573744,32823294,32844782,32849727	32573637,32573846,32823387,32844860,32849802	0.833333
Peyers_patch_male_adult_37_years	chr2	186006951	186007034	186007004	-	RAMPAGE_only	6	6	32	1.923726	3.652518	chr2	186006679	186007022	LTR|ERV1|MER90a	+	chr2	186005278	186010894	STRG.22522.1	-	186005278	186010894	0.937500
Peyers_patch_male_adult_37_years	chr17	36499078	36499105	36499104	-	High_confidence	2	2	6	0.360699	2.584963	chr17	36498869	36499061	SINE|MIR|MIRb	-	chr17	36496184	36498883	MYO19|ENST00000612392.1	-	36496184,36498265	36496406,36498883	0.666667
Peyers_patch_male_adult_37_years	chr1	93582543	93582549	93582548	-	RAMPAGE_only	3	3	9	0.541048	2.500000	chr1	93582523	93582592	LINE|L2|L2	+	chr1	93561786	93585082	BCAR3|ENST00000539242.5	-	93561786,93567278,93567739,93571669,93576013,93582300,93584017,93584971	93562419,93567491,93567851,93571841,93576129,93582953,93584121,93585082	0.888889
Peyers_patch_male_adult_37_years	chrX	2917810	2917830	2917810	-	RAMPAGE_only	7	8	12	0.721397	3.251629	chrX	2917473	2917770	SINE|Alu|AluJo	-	chrX	2903977	2929279	STRG.146200.2	-	2903977,2908720,2909816,2910658,2917803,2920600,2921902,2925615,2929231	2907632,2908842,2909979,2914773,2918227,2920723,2922024,2925765,2929279	0.916667
Peyers_patch_male_adult_37_years	chr22	46578331	46578332	46578331	+	RAMPAGE_only	9	9	10	0.601164	2.725481	chr22	46578347	46578471	SINE|MIR|MIRc	+	chr22	46577128	46637936	STRG.145753.6	+	46577128,46626750,46637839	46577290,46626961,46637936	0.600000
Peyers_patch_male_adult_37_years	chr15	40650121	40650152	40650151	+	High_confidence	12	13	56	3.366520	4.505345	chr15	40650091	40650181	LINE|L2|L2c	+	chr15	40650126	40654977	KNL1|ENST00000532347.1	+	40650126,40650543,40651470,40652004,40654908	40650378,40650583,40651572,40652105,40654977	0.714286
Peyers_patch_male_adult_37_years	chr12	10553364	10553365	10553364	+	High_confidence	5	5	7	0.420815	2.521641	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.714286
Peyers_patch_male_adult_37_years	chr19	15682023	15682052	15682051	+	High_confidence	4	6	11	0.661281	3.095795	chr19	15681898	15682076	SINE|MIR|MIRb	-	chr19	15681500	15697143	CYP4F12|ENST00000546608.1	+	15681500,15683492,15685067,15695935,15696160,15696907	15682514,15684882,15685197,15696069,15696512,15697143	1.000000
Peyers_patch_male_adult_37_years	chr7	103152526	103152562	103152561	+	High_confidence	8	11	33	1.983842	4.542748	chr7	103152344	103152807	LTR|ERV1|LTR2	+	chr7	103151783	103197501	STRG.65961.2	+	103151783,103194976	103153073,103197501	0.878788
Peyers_patch_male_adult_37_years	chr17	59619894	59619923	59619894	+	High_confidence	513	610	1691	101.656893	5.555303	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.959196
Peyers_patch_male_adult_37_years	chr9	4626582	4626599	4626598	-	RAMPAGE_only	4	4	11	0.661281	2.646439	chr9	4625982	4626718	LTR|ERVL|LTR50	+	chr9	4625637	4666399	SPATA6L|ENST00000451763.6	-	4625637,4635274,4646486,4656040,4661898,4666211	4629168,4635399,4646528,4656089,4662036,4666399	0.818182
Peyers_patch_male_adult_37_years	chr8	133259473	133259474	133259473	-	RAMPAGE_only	5	6	8	0.480931	2.500000	chr8	133259402	133259582	SINE|MIR|MIRb	-	chr8	133259094	133262257	NDRG1|ENST00000518094.1	-	133259094,133262046	133259230,133262257	0.500000
Peyers_patch_male_adult_37_years	chr12	120226426	120226445	120226444	-	High_confidence	4	4	8	0.480931	2.807355	chr12	120226386	120226490	SINE|MIR|MIRc	-	chr12	120224174	120226499	PXN|ENST00000540221.1	-	120224174,120226152	120224377,120226499	0.875000
Peyers_patch_male_adult_37_years	chr15	59556000	59556028	59556009	+	High_confidence	18	22	93	5.590829	5.548123	chr15	59555944	59556107	SINE|Alu|AluJr	+	chr15	59556018	59556446	STRG.117118.1	+	59556018	59556446	0.784946
Peyers_patch_male_adult_37_years	chr11	47172288	47172289	47172288	-	High_confidence	4	4	7	0.420815	2.584963	chr11	47172030	47172274	SINE|MIR|MIRb	-	chr11	47164300	47171557	STRG.92743.11	-	47164300,47166267,47166505,47166759,47167908,47168122	47165502,47166386,47166599,47166886,47168043,47171557	0.714286
Peyers_patch_male_adult_37_years	chr2	230713874	230713910	230713874	+	High_confidence	6	6	14	0.841630	3.521641	chr2	230713791	230714179	LINE|L2|L2c	-	chr2	230713547	230821075	CAB39|NM_001130849.1	+	230713547,230759958,230790871,230793212,230798728,230810262,230814048,230817753,230818515	230714058,230760115,230791036,230793331,230798897,230810322,230814114,230817897,230821075	0.642857
Peyers_patch_male_adult_37_years	chr5	100090464	100090481	100090464	-	RAMPAGE_only	2	2	7	0.420815	2.521641	chr5	100090327	100090684	LTR|ERVL-MaLR|THE1B	-	chr5	100062274	100067954	AC092278.1|ENST00000621951.1	-	100062274,100066007,100066238,100066661,100067766	100062359,100066154,100066417,100066807,100067954	0.714286
Peyers_patch_male_adult_37_years	chr9	22113544	22113547	22113544	+	High_confidence	46	59	103	6.191993	5.747036	chr9	22113591	22113733	SINE|MIR|MIRc	+	chr9	22113677	22120713	STRG.77228.1	+	22113677,22118643,22120199,22120503	22113799,22118767,22120410,22120713	0.669903
Peyers_patch_male_adult_37_years	chr17	2667148	2667196	2667195	+	High_confidence	13	13	41	2.464774	4.967308	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.853659
Peyers_patch_male_adult_37_years	chr15	84888205	84888217	84888205	+	RAMPAGE_only	9	9	20	1.202329	2.931109	chr15	84888103	84888212	LINE|L2|L2b	-	chr15	84884677	84945796	STRG.119267.4	+	84884677,84886671,84887744,84890442,84894939,84904096,84905538,84908717,84918523,84920988,84923984,84933144,84935025,84935320,84943444,84944565,84944755,84945124	84884751,84886787,84888860,84890534,84895123,84904238,84905652,84908795,84918604,84921069,84924110,84933275,84935194,84935518,84943526,84944664,84944867,84945796	0.950000
Peyers_patch_male_adult_37_years	chr4	851139	851140	851139	-	High_confidence	17	17	23	1.382678	3.914866	chr4	851102	851393	SINE|Alu|AluJb	-	chr4	849275	851673	GAK|ENST00000502799.1	-	849275,849891	849774,851673	1.000000
Peyers_patch_male_adult_37_years	chr14	24435986	24436007	24436006	+	High_confidence	4	4	10	0.601164	2.646439	chr14	24435906	24436044	LINE|L1|L1PB4	-	chr14	24435456	24438408	KHNYN|ENST00000556255.1	+	24435456,24436387,24437035	24436179,24436489,24438408	0.600000
Peyers_patch_male_adult_37_years	chr1	52708380	52708388	52708380	-	RAMPAGE_only	5	5	9	0.541048	2.503258	chr1	52708320	52708479	LINE|L2|L2c	+	chr1	52684450	52698366	COA7|ENST00000371538.4	-	52684450,52692726,52698220	52688168,52692867,52698366	0.888889
Peyers_patch_male_adult_37_years	chr16	67183466	67183467	67183466	-	High_confidence	9	9	11	0.661281	3.121928	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.909091
Peyers_patch_male_adult_37_years	chr3	164990488	164990527	164990509	-	RAMPAGE_only	3	3	10	0.601164	2.947703	chr3	164990468	164990567	LTR|ERVL|LTR40a	+	chr3	164978897	165078495	SI|ENST00000264382.7	-	164978897,164982242,164983001,164987137,164991352,164992176,164992312,164994256,164996534,164996737,164998539,165006815,165007910,165009278,165012979,165015122,165015951,165017547,165017760,165017969,165019601,165021228,165023569,165030711,165032521,165033394,165036388,165037899,165039077,165039886,165040939,165043058,165046840,165049126,165049790,165055193,165058962,165059167,165059901,165062370,165063441,165065260,165067339,165068721,165069077,165074530,165075894,165078432	164979430,164982410,164983051,164987226,164991477,164992233,164992397,164994405,164996651,164996772,164998673,165006954,165007998,165009395,165013042,165015233,165016080,165017673,165017873,165018066,165019770,165021383,165023776,165030867,165032692,165033444,165036477,165038024,165039134,165039971,165041094,165043175,165047012,165049244,165049875,165055307,165059082,165059299,165060027,165062483,165063541,165065432,165067491,165068831,165069195,165074667,165076012,165078495	0.900000
Peyers_patch_male_adult_37_years	chr17	7291611	7291633	7291611	-	RAMPAGE_only	5	5	11	0.661281	2.845351	chr17	7291562	7291737	DNA|hAT-Charlie|MER5A	-	chr17	7288262	7293935	YBX2|ENST00000571834.5	-	7288262,7288748,7289529,7289967,7290250,7291092,7293474,7293827	7288643,7288838,7289725,7290071,7290535,7292059,7293538,7293935	1.000000
Peyers_patch_male_adult_37_years	chr19	35115822	35115923	35115834	+	High_confidence	87	88	767	46.109306	7.533664	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.714472
Peyers_patch_male_adult_37_years	chr12	67718666	67718667	67718666	-	RAMPAGE_only	9	9	9	0.541048	2.725481	chr12	67718353	67719796	LTR|ERV1|LTR12C	-	chr12	67709046	67729475	LINC02421|ENST00000542219.1	-	67709046,67715321,67718342,67722378,67729395	67710685,67716203,67718541,67722713,67729475	1.000000
Peyers_patch_male_adult_37_years	chr2	240606572	240606591	240606590	+	RAMPAGE_only	5	5	9	0.541048	2.750000	chr2	240606494	240607081	LINE|L2|L2b	-	chr2	240605444	240631170	STRG.25193.8	+	240605444,240606386,240616387,240617089,240618887,240629948	240605570,240606612,240616511,240617393,240623138,240631170	0.666667
Peyers_patch_male_adult_37_years	chr6	11733313	11733329	11733313	-	RAMPAGE_only	7	8	18	1.082096	2.984234	chr6	11733167	11733322	LINE|L2|L2c	+	chr6	11714377	11735656	STRG.52869.6	-	11714377,11723348,11728326,11735567	11714512,11723500,11733911,11735656	0.944444
Peyers_patch_male_adult_37_years	chr1	115229325	115229344	115229343	+	High_confidence	23	29	66	3.967685	4.935121	chr1	115229275	115229408	LINE|L2|L2c	-	chr1	115229327	115230376	STRG.7035.1	+	115229327	115230376	0.924242
Peyers_patch_male_adult_37_years	chr8	61647025	61647059	61647058	-	High_confidence	4	5	11	0.661281	2.921928	chr8	61646951	61647212	LINE|L2|L2a	+	chr8	61626140	61646872	ASPH|ENST00000519678.5	-	61626140,61633682,61637946,61642887,61643385,61643944,61644599,61646749	61626280,61633727,61638003,61642920,61643433,61644001,61644632,61646872	0.727273
Peyers_patch_male_adult_37_years	chr14	34536102	34536110	34536109	-	High_confidence	8	8	15	0.901747	3.521641	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.666667
Peyers_patch_male_adult_37_years	chr16	28952140	28952162	28952152	+	RAMPAGE_only	11	11	28	1.683260	4.664498	chr16	28952153	28952214	DNA|hAT-Ac|OldhAT1	+	chr16	28954605	28967097	STRG.122594.2	+	28954605,28956150,28958716,28958990,28963704	28956058,28956337,28958861,28959100,28967097	1.000000
Peyers_patch_male_adult_37_years	chr3	52482654	52482667	52482654	+	RAMPAGE_only	12	12	31	1.863610	4.155652	chr3	52482568	52482694	DNA|TcMar-Tc2|Kanga1c	+	chr3	52455616	52493068	STRG.28605.3	+	52455616,52457842,52458661,52470858,52471813,52472302,52473733,52476446,52477573,52478096,52478448,52479748,52480183,52480878,52485777,52487195,52489335,52490704,52491351,52491871	52455734,52457926,52458844,52470907,52471977,52472398,52473829,52476599,52477642,52478282,52478577,52479862,52480295,52484637,52485827,52488605,52490231,52490833,52491513,52493068	1.000000
Peyers_patch_male_adult_37_years	chr1	223759083	223759087	223759086	+	High_confidence	5	5	9	0.541048	2.947703	chr1	223759082	223759137	SINE|Alu|AluJr	-	chr1	223758225	223776018	CAPN2|ENST00000487223.5	+	223758225,223761580,223762185,223764149,223766366,223769840,223770446,223771808,223772180,223774833	223759481,223761617,223762251,223764207,223766431,223769909,223770525,223771925,223772239,223776018	0.888889
Peyers_patch_male_adult_37_years	chr8	143558019	143558020	143558019	+	High_confidence	8	8	8	0.480931	2.750000	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.625000
Peyers_patch_male_adult_37_years	chr2	30737187	30737225	30737224	-	RAMPAGE_only	11	11	21	1.262445	3.916127	chr2	30737164	30737292	LINE|L2|L2	-	chr2	30722770	30807426	STRG.14856.1	-	30722770,30729784,30730729,30731343,30732437,30734448,30736502,30738234,30738399,30741907,30742325,30743382,30745722,30751102,30753052,30754289,30758045,30763081,30764131,30770312,30775929,30777566,30787127,30807301	30729417,30729886,30730786,30731399,30732566,30734524,30736571,30738293,30738457,30741964,30742359,30743579,30745734,30751251,30753198,30754364,30758137,30763156,30764306,30770449,30776045,30777639,30787357,30807426	0.761905
Peyers_patch_male_adult_37_years	chr1	150457322	150457350	150457349	+	RAMPAGE_only	3	3	12	0.721397	3.418296	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150445792	150473556	STRG.8046.2	+	150445792,150457287,150460059,150464526,150470560,150471882	150446401,150457570,150460317,150464727,150471742,150473556	1.000000
Peyers_patch_male_adult_37_years	chr3	170077836	170077841	170077836	+	RAMPAGE_only	6	6	13	0.781514	3.026987	chr3	170077866	170078720	LTR|ERVK|HERVK22-int	+	chr3	170068715	170085403	STRG.34597.8	+	170068715,170083904	170082758,170085403	1.000000
Peyers_patch_male_adult_37_years	chr2	232551060	232551106	232551105	+	High_confidence	2	2	8	0.480931	3.000000	chr2	232551133	232551224	SINE|MIR|MIRb	+	chr2	232550806	232567205	EIF4E2|ENST00000454501.1	+	232550806,232556415,232557883,232564246,232566828,232567077	232551218,232556530,232558018,232564351,232566981,232567205	1.000000
Peyers_patch_male_adult_37_years	chr12	124355432	124355456	124355432	-	RAMPAGE_only	1	1	7	0.420815	2.584963	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124324415	124422554	NCOR2|ENST00000356219.7	-	124324415,124326190,124327408,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124398118,124400500,124402403,124419956,124422500	124325583,124326370,124327633,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362297,124363799,124372610,124374463,124378384,124385887,124398181,124400673,124402561,124420055,124422554	0.857143
Peyers_patch_male_adult_37_years	chr8	102261176	102261199	102261188	-	High_confidence	2	2	8	0.480931	2.521641	chr8	102261109	102261291	DNA|hAT-Ac|OldhAT1	+	chr8	102253945	102261986	UBR5|ENST00000517465.1	-	102253945,102257631,102258315,102258984,102261145,102261914	102254514,102257717,102258424,102259129,102261259,102261986	0.875000
Peyers_patch_male_adult_37_years	chr2	240606531	240606536	240606531	+	RAMPAGE_only	4	4	8	0.480931	2.521641	chr2	240606494	240607081	LINE|L2|L2b	-	chr2	240609545	240631170	STRG.25193.11	+	240609545,240616975,240618887,240629948	240616511,240617393,240623138,240631170	0.500000
Peyers_patch_male_adult_37_years	chr1	52911959	52911960	52911959	-	High_confidence	9	9	9	0.541048	2.725481	chr1	52911855	52912001	SINE|MIR|MIRc	+	chr1	52907838	52911888	ECHDC2|ENST00000492992.1	-	52907838,52911565,52911722	52907954,52911653,52911888	0.777778
Peyers_patch_male_adult_37_years	chr17	31993993	31993996	31993995	+	High_confidence	3	5	8	0.480931	2.521641	chr17	31994036	31994094	LINE|L1|L1MA2	+	chr17	31994352	31999376	SUZ12|ENST00000578106.1	+	31994352,31995563,31996797,31998657	31994721,31995762,31996877,31999376	0.875000
Peyers_patch_male_adult_37_years	chr6	166957430	166957439	166957430	-	High_confidence	4	4	10	0.601164	2.503258	chr6	166957416	166957859	LINE|L2|L2a	+	chr6	166929539	166957184	RNASET2|ENST00000476238.6	-	166929539,166931043,166934090,166938894,166943018,166946681,166948569,166952487,166956096,166957125	166929791,166931118,166934136,166939008,166943089,166946739,166948625,166952548,166956191,166957184	0.700000
Peyers_patch_male_adult_37_years	chr14	22909560	22909561	22909560	-	RAMPAGE_only	9	9	10	0.601164	2.947703	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22906027	22919110	RBM23|ENST00000554955.5	-	22906027,22908332,22909482,22911327,22918998	22906368,22908380,22909595,22911403,22919110	0.500000
Peyers_patch_male_adult_37_years	chr6	158303374	158303375	158303374	-	High_confidence	271	274	291	17.493883	5.284418	chr6	158303244	158303618	LTR|ERVK|MER11A	-	chr6	158296463	158303364	STRG.60113.2	-	158296463	158303364	0.982818
Peyers_patch_male_adult_37_years	chr7	30578006	30578010	30578006	-	High_confidence	3	3	8	0.480931	2.500000	chr7	30576831	30578376	LTR|ERV1|LOR1-int	-	chr7	30548356	30577779	LOC401320|NR_038889.1	-	30548356,30552099,30561465,30563730,30568832,30576563,30577648	30550781,30552179,30562128,30563998,30568989,30576710,30577779	0.875000
Peyers_patch_male_adult_37_years	chr1	166850177	166850184	166850177	+	RAMPAGE_only	5	5	9	0.541048	2.750000	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.888889
Peyers_patch_male_adult_37_years	chr2	191682530	191682576	191682530	+	RAMPAGE_only	9	9	33	1.983842	4.487893	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191686157	STRG.22975.7	+	191678989,191681945,191682491,191684229,191685598	191679128,191682017,191683804,191684296,191686157	1.000000
Peyers_patch_male_adult_37_years	chr11	119046573	119046615	119046591	-	RAMPAGE_only	3	3	21	1.262445	3.484184	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119044311	119047820	STRG.96868.11	-	119044311,119045780,119046416,119046561,119047733	119045654,119045834,119046467,119046802,119047820	0.952381
Peyers_patch_male_adult_37_years	chr16	19430417	19430573	19430572	+	RAMPAGE_only	19	19	124	7.454438	5.830238	chr16	19430590	19430808	DNA|hAT-Charlie|Charlie18a	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	0.991935
Peyers_patch_male_adult_37_years	chr11	93499292	93499344	93499303	-	High_confidence	7	7	35	2.104075	3.943289	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	0.971429
Peyers_patch_male_adult_37_years	chr19	47751102	47751103	47751102	+	RAMPAGE_only	7	7	8	0.480931	2.807355	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47745564	47757057	NOP53|ENST00000600410.5	+	47745564,47746966,47750177,47750907,47751519,47752511,47755347,47755755,47756687,47756998	47745783,47747031,47750286,47751107,47751590,47754891,47755523,47756604,47756744,47757057	0.875000
Peyers_patch_male_adult_37_years	chr11	87796699	87796700	87796699	+	High_confidence	6	6	7	0.420815	2.584963	chr11	87796719	87797764	LINE|L1|L1PA5	+	chr11	87796617	87802549	STRG.95412.1	+	87796617	87802549	0.857143
Peyers_patch_male_adult_37_years	chr3	58529024	58529036	58529035	-	High_confidence	4	4	10	0.601164	3.169925	chr3	58529017	58529296	DNA|TcMar-Tigger|MER46C	+	chr3	58526504	58529206	ACOX2|ENST00000459888.1	-	58526504,58528793	58526656,58529206	0.800000
Peyers_patch_male_adult_37_years	chr22	31124213	31124214	31124213	+	RAMPAGE_only	6	6	7	0.420815	2.584963	chr22	31124115	31124241	SINE|MIR|MIR3	-	chr22	31122993	31134636	STRG.144719.6	+	31122993,31124141,31124844,31126375,31126612,31127356,31127950,31128213,31128470,31133097,31133405,31133609,31133912	31123119,31124263,31126010,31126489,31127037,31127532,31128062,31128323,31128654,31133235,31133483,31133714,31134636	0.714286
Peyers_patch_male_adult_37_years	chr19	9140393	9140428	9140393	+	High_confidence	47	47	126	7.574671	5.940414	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.809524
Peyers_patch_male_adult_37_years	chr16	84495929	84495968	84495967	-	RAMPAGE_only	4	4	11	0.661281	3.277613	chr16	84495965	84496589	LTR|ERV1|LTR9B	+	chr16	84476420	84504629	STRG.124351.2	-	84476420,84480528,84482591,84486630,84489277,84495682,84497933,84502720,84504600	84480026,84480708,84482710,84487059,84489422,84495913,84498111,84502842,84504629	0.636364
Peyers_patch_male_adult_37_years	chr17	69314863	69314939	69314879	-	High_confidence	8	8	58	3.486753	4.674199	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	0.948276
Peyers_patch_male_adult_37_years	chr20	41348795	41348860	41348859	+	RAMPAGE_only	2	2	10	0.601164	3.121928	chr20	41348889	41349006	SINE|MIR|MIRc	+	chr20	41340971	41360400	LPIN3|ENST00000632009.1	+	41340971,41345795,41347551,41348618,41349088,41349773,41350054,41351820,41352059,41352605,41352797,41354644,41354819,41355895,41357039,41357360,41357881,41358236,41358438,41358721	41341002,41345995,41347647,41348887,41349172,41349894,41350397,41351920,41352220,41352699,41352867,41354737,41354863,41356034,41357188,41357447,41358034,41358351,41358542,41360400	0.700000
Peyers_patch_male_adult_37_years	chr16	28608315	28608340	28608315	-	High_confidence	4	4	15	0.901747	3.324863	chr16	28608009	28608286	SINE|Alu|AluSp	-	chr16	28605195	28608920	SULT1A1|ENST00000569554.5	-	28605195,28606055,28606760,28606950,28608290,28608477,28608707	28605933,28606236,28606855,28607077,28608388,28608603,28608920	0.866667
Peyers_patch_male_adult_37_years	chr14	102947726	102947729	102947726	-	RAMPAGE_only	3	3	8	0.480931	2.521641	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.500000
Peyers_patch_male_adult_37_years	chr2	208334395	208334455	208334417	+	High_confidence	3	3	14	0.841630	3.392747	chr2	208334119	208334819	LINE|L2|L2a	+	chr2	208334371	208336865	PIKFYVE|ENST00000474721.1	+	208334371,208335305,208335792,208336045,208336837	208334503,208335419,208335901,208336200,208336865	0.642857
Peyers_patch_male_adult_37_years	chr5	160198941	160198989	160198962	-	RAMPAGE_only	9	10	43	2.585007	4.926037	chr5	160198298	160198985	LINE|L2|L2a	+	chr5	160196590	160204826	AC008609.1|ENST00000501818.1	-	160196590,160204721	160199171,160204826	0.953488
Peyers_patch_male_adult_37_years	chr10	65570512	65570522	65570512	+	High_confidence	7	8	35	2.104075	4.734522	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570501	65585801	LINC01515|ENST00000599409.5	+	65570501,65571424,65572934,65585484,65585664	65570759,65571579,65573056,65585567,65585801	0.742857
Peyers_patch_male_adult_37_years	chr20	18794044	18794086	18794085	+	High_confidence	9	9	23	1.382678	3.386266	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.956522
Peyers_patch_male_adult_37_years	chr3	65886713	65886732	65886731	-	High_confidence	8	8	20	1.202329	3.681881	chr3	65886424	65886848	LTR|ERVL-MaLR|MLT1J	+	chr3	65876749	65886843	STRG.29880.1	-	65876749	65886843	0.950000
Peyers_patch_male_adult_37_years	chr7	44057968	44058030	44057968	+	RAMPAGE_only	4	4	25	1.502911	4.293661	chr7	44057879	44058006	SINE|MIR|MIR	-	chr7	44056792	44061714	DBNL|ENST00000449997.1	+	44056792,44057781,44057972,44058128,44058431,44059353,44059542,44060047,44060776	44056903,44057859,44057992,44058280,44058983,44059449,44059658,44060153,44061714	0.760000
Peyers_patch_male_adult_37_years	chr21	41430585	41430586	41430585	+	RAMPAGE_only	11	11	16	0.961863	3.375000	chr21	41429929	41430715	DNA|hAT-Charlie|Charlie2b	+	chr21	41431713	41459214	MX1|ENST00000288383.10	+	41431713,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41432175,41435960,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	1.000000
Peyers_patch_male_adult_37_years	chr9	34649472	34649491	34649472	+	High_confidence	3	3	8	0.480931	2.807355	chr9	34649448	34649570	LINE|RTE-BovB|MamRTE1	-	chr9	34648921	34650583	GALT|ENST00000488412.2	+	34648921,34650368	34649564,34650583	0.500000
Peyers_patch_male_adult_37_years	chr10	133370001	133370021	133370016	-	RAMPAGE_only	11	12	25	1.502911	4.251629	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.920000
Peyers_patch_male_adult_37_years	chr11	71480100	71480104	71480100	+	High_confidence	10	10	18	1.082096	3.794653	chr11	71479919	71480150	LINE|L1|L1MB7	-	chr11	71480148	71490876	NADSYN1|ENST00000526039.6	+	71480148,71480754,71481355,71482000,71482848,71484311,71485541,71490844	71480274,71480879,71481404,71482025,71483017,71484447,71485648,71490876	1.000000
Peyers_patch_male_adult_37_years	chr11	65434799	65434977	65434799	+	RAMPAGE_only	21	21	214	12.864917	5.758080	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
Peyers_patch_male_adult_37_years	chr16	15740061	15740078	15740061	-	RAMPAGE_only	5	5	12	0.721397	3.584963	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	1.000000
Peyers_patch_male_adult_37_years	chr15	71331900	71331974	71331909	+	High_confidence	28	28	158	9.498397	6.446236	chr15	71331901	71332325	LTR|ERVL|LTR16B2	-	chr15	71331433	71418041	STRG.118259.7	+	71331433,71411686,71416766	71332372,71416741,71418041	0.867089
Peyers_patch_male_adult_37_years	chr1	15776893	15776914	15776893	+	High_confidence	6	6	13	0.781514	3.180833	chr1	15776582	15776902	SINE|Alu|AluSx3	+	chr1	15777072	15784838	FBLIM1|ENST00000509138.1	+	15777072,15784547	15777287,15784838	0.692308
Peyers_patch_male_adult_37_years	chr1	51403428	51403433	51403428	-	RAMPAGE_only	9	9	21	1.262445	2.960964	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.857143
Peyers_patch_male_adult_37_years	chr15	89852556	89852598	89852597	-	RAMPAGE_only	3	3	11	0.661281	2.913977	chr15	89852343	89852609	LINE|CR1|L3	-	chr15	89835423	89837954	AP3S2|ENST00000558926.1	-	89835423,89837614	89835643,89837954	0.636364
Peyers_patch_male_adult_37_years	chr16	2669582	2669585	2669582	-	RAMPAGE_only	7	7	17	1.021979	3.375000	chr16	2669524	2670537	LTR|ERVK|LTR13	-	chr16	2666709	2671461	STRG.120365.15	-	2666709,2668547	2668497,2671461	0.764706
Peyers_patch_male_adult_37_years	chr8	97850227	97850291	97850255	+	High_confidence	11	16	57	3.426637	5.231200	chr8	97850001	97850255	LTR|ERVL|LTR41B	+	chr8	97850238	97852598	STRG.73366.4	+	97850238,97851396	97850442,97852598	0.596491
Peyers_patch_male_adult_37_years	chr17	75090126	75090127	75090126	+	High_confidence	10	10	10	0.601164	3.121928	chr17	75089992	75090247	SINE|Alu|AluSx	-	chr17	75090161	75100182	SLC16A5|ENST00000584207.5	+	75090161,75093588,75098037,75100006	75090332,75093835,75098181,75100182	1.000000
Peyers_patch_male_adult_37_years	chr16	3129625	3129669	3129660	-	High_confidence	4	4	10	0.601164	3.321928	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3125599	3129554	ZNF213-AS1|ENST00000573414.1	-	3125599,3129460	3125966,3129554	0.500000
Peyers_patch_male_adult_37_years	chr2	240686302	240686363	240686341	+	High_confidence	10	10	37	2.224308	2.939997	chr2	240685606	240686514	LTR|ERV1|MER49	-	chr2	240686333	240690414	AC011298.1|ENST00000407635.2	+	240686333,240688415,240688601	240687821,240688512,240690414	1.000000
Peyers_patch_male_adult_37_years	chr10	96227682	96227708	96227682	-	RAMPAGE_only	2	2	6	0.360699	2.584963	chr10	96227660	96227782	SINE|MIR|MIRb	-	chr10	96191698	96271516	BLNK|NM_001258440.1	-	96191698,96200074,96200981,96204056,96204531,96207010,96207871,96209837,96215320,96216652,96223825,96227409,96230793,96242734,96246983,96271351	96192092,96200158,96201058,96204088,96204616,96207053,96207899,96209907,96215389,96216734,96223989,96227566,96230834,96242784,96247049,96271516	0.500000
Peyers_patch_male_adult_37_years	chr1	155629475	155629493	155629475	-	RAMPAGE_only	2	2	6	0.360699	2.584963	chr1	155629343	155634877	LTR|ERVK|HERVK-int	-	chr1	155626851	155632609	STRG.8476.1	-	155626851	155632609	1.000000
Peyers_patch_male_adult_37_years	chr6	26257496	26257498	26257496	+	High_confidence	194	210	287	17.253417	6.546233	chr6	26257218	26257617	LTR|ERVK|LTR22A	+	chr6	26257463	26263424	STRG.53532.1	+	26257463,26261371	26260407,26263424	0.996516
Peyers_patch_male_adult_37_years	chr1	59295909	59295953	59295929	+	High_confidence	4	6	17	1.021979	3.750000	chr1	59295878	59295975	SINE|MIR|MIR3	+	chr1	59296854	59346369	FGGY|ENST00000462744.5	+	59296854,59321535,59331842,59339957,59346246	59296907,59321750,59332032,59340069,59346369	0.588235
Peyers_patch_male_adult_37_years	chr1	155378312	155378346	155378312	-	RAMPAGE_only	2	2	8	0.480931	2.750000	chr1	155378311	155378369	LINE|CR1|L3	+	chr1	155370146	155370868	ASH1L|ENST00000477427.1	-	155370146,155370776	155370650,155370868	0.750000
Peyers_patch_male_adult_37_years	chr11	57793672	57793802	57793743	+	RAMPAGE_only	21	22	80	4.809315	5.125897	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57781602	57796584	CTNND1|ENST00000530068.5	+	57781602,57791491,57794009,57795576,57796456	57781646,57791673,57794081,57795729,57796584	0.650000
Peyers_patch_male_adult_37_years	chr2	153871921	153871926	153871921	+	High_confidence	4	4	8	0.480931	2.807355	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.750000
Peyers_patch_male_adult_37_years	chr12	32601263	32601285	32601284	+	RAMPAGE_only	5	5	11	0.661281	2.846439	chr12	32601190	32601318	SINE|MIR|MIRb	-	chr12	32582378	32644751	FGD4|ENST00000494977.1	+	32582378,32598496,32600409,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624658,32624975,32625653,32633548,32637649,32638654,32640275,32642760,32644593	32582467,32598586,32600509,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32624751,32625068,32625779,32633689,32637855,32638795,32640453,32642842,32644751	0.909091
Peyers_patch_male_adult_37_years	chr6	75891300	75891305	75891304	+	RAMPAGE_only	12	14	19	1.142212	3.576618	chr6	75891350	75891661	SINE|Alu|AluY	+	chr6	75890209	75908560	MYO6|ENST00000430435.1	+	75890209,75891227,75892529,75894813,75895230,75907604,75908495	75890265,75891306,75892690,75894840,75895260,75907708,75908560	0.736842
Peyers_patch_male_adult_37_years	chr16	75525007	75525093	75525056	-	RAMPAGE_only	8	8	54	3.246288	4.596332	chr16	75524950	75525063	LTR|ERVL-MaLR|MLT1H	+	chr16	75471900	75535247	STRG.124075.1	-	75471900,75481816,75490613,75494939,75505154,75533088,75535126	75479844,75481891,75490769,75504824,75531640,75533183,75535247	0.981481
Peyers_patch_male_adult_37_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	15	15	16	0.961863	3.506891	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.750000
Peyers_patch_male_adult_37_years	chr19	38820374	38820402	38820374	+	High_confidence	3	3	10	0.601164	3.169925	chr19	38820408	38820631	SINE|MIR|MIR	+	chr19	38820165	38823223	AC104534.1|ENST00000594558.1	+	38820165,38822984	38820492,38823223	0.800000
Peyers_patch_male_adult_37_years	chr17	17182318	17182355	17182318	+	High_confidence	2	2	8	0.480931	2.521641	chr17	17182311	17182427	LINE|RTE-X|L4_A_Mam	-	chr17	17181503	17183257	AC055811.4|ENST00000624039.1	+	17181503	17183257	0.750000
Peyers_patch_male_adult_37_years	chr17	67920083	67920100	67920092	+	High_confidence	3	3	12	0.721397	3.095795	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	0.833333
Peyers_patch_male_adult_37_years	chr10	45594315	45594368	45594315	-	High_confidence	7	8	24	1.442794	4.084963	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45454592	45594491	STRG.85118.1	-	45454592,45459119,45461230,45464238,45489366,45533109,45553111,45594234	45458543,45459267,45461411,45464327,45489417,45533289,45553204,45594491	0.875000
Peyers_patch_male_adult_37_years	chr2	28600587	28600618	28600587	+	RAMPAGE_only	2	2	10	0.601164	2.503258	chr2	28600380	28600665	LINE|RTE-X|L4_B_Mam	-	chr2	28496118	28643152	PLB1|ENST00000404858.5	+	28496118,28516807,28518465,28519704,28525266,28525904,28529316,28529727,28532107,28538285,28539098,28540365,28541706,28543211,28548859,28550009,28552927,28563040,28565279,28566795,28573196,28578106,28579626,28582404,28585760,28589449,28589674,28590004,28591132,28591699,28592660,28593680,28598004,28598651,28600808,28601251,28601898,28602820,28603965,28604654,28605852,28606495,28614030,28617726,28618340,28620264,28620599,28620878,28625056,28626427,28628562,28629093,28630585,28632035,28632943,28640926,28642857	28496169,28516869,28518532,28519763,28525307,28525945,28529407,28529779,28532194,28538381,28539178,28540441,28541811,28543268,28548931,28550084,28552991,28563099,28565353,28566839,28573305,28578158,28579707,28582505,28585842,28589554,28589770,28590076,28591171,28591760,28592719,28593754,28598048,28598760,28600860,28601332,28601964,28602921,28604047,28604759,28605948,28606567,28614096,28617787,28618399,28620332,28620643,28620978,28625108,28626508,28628628,28629185,28630664,28632140,28633039,28641001,28643152	0.600000
Peyers_patch_male_adult_37_years	chr19	44744925	44744996	44744940	+	High_confidence	36	37	177	10.640609	6.402883	chr19	44744681	44744974	SINE|Alu|AluJo	+	chr19	44744938	44745949	STRG.137118.1	+	44744938,44745845	44745683,44745949	0.576271
Peyers_patch_male_adult_37_years	chr14	20369344	20369488	20369344	-	RAMPAGE_only	6	6	42	2.524890	4.689704	chr14	20369006	20369307	SINE|Alu|AluY	-	chr14	20365666	20373080	STRG.109122.9	-	20365666,20368797,20369673,20371217,20371488,20372732,20373010	20368559,20369576,20369779,20371314,20371632,20372857,20373080	1.000000
Peyers_patch_male_adult_37_years	chr11	72008053	72008102	72008053	-	High_confidence	3	3	15	0.901747	3.521641	chr11	72007942	72008176	SINE|MIR|MIR	+	chr11	72002863	72007916	NUMA1|ENST00000540626.5	-	72002863,72003886,72004224,72004639,72005232,72006034,72007188	72003538,72004099,72004341,72004816,72005369,72006263,72007916	0.933333
Peyers_patch_male_adult_37_years	chr1	43525091	43525187	43525091	+	High_confidence	291	294	563	33.845553	7.402367	chr1	43524527	43525317	LINE|L2|L2c	-	chr1	43525186	43553519	PTPRF|ENST00000496043.5	+	43525186,43528656,43538197,43545030,43553491	43525257,43528756,43538277,43545166,43553519	0.735346
Peyers_patch_male_adult_37_years	chr8	2727242	2727248	2727247	+	High_confidence	3	3	9	0.541048	2.725481	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	1.000000
Peyers_patch_male_adult_37_years	chr1	109669746	109669754	109669746	+	High_confidence	2	2	7	0.420815	2.807355	chr1	109669639	109670357	LTR|ERV1|LTR12_	-	chr1	109669546	109674864	GSTM2|ENST00000472225.6	+	109669546,109670174,109671286,109671472,109674746	109670063,109670234,109671382,109671583,109674864	1.000000
Peyers_patch_male_adult_37_years	chr8	70809543	70809555	70809554	+	RAMPAGE_only	4	4	11	0.661281	3.321928	chr8	70808322	70814458	LINE|L1|L1PA4	+	chr8	70806436	70813269	STRG.72237.2	+	70806436	70813269	0.818182
Peyers_patch_male_adult_37_years	chr8	18919213	18919234	18919233	-	RAMPAGE_only	12	12	19	1.142212	3.576618	chr8	18918926	18919366	LINE|CR1|L3	-	chr8	18530710	18887034	PSD3|ENST00000523619.5	-	18530710,18556208,18572527,18575127,18600363,18632612,18655641,18765448,18799294,18801269,18804521,18804703,18867673,18871625,18886935	18535958,18556352,18572672,18575285,18600434,18632806,18655685,18765538,18799353,18801382,18804602,18804898,18868069,18872733,18887034	0.789474
Peyers_patch_male_adult_37_years	chr10	68284012	68284098	68284081	-	RAMPAGE_only	11	11	41	2.464774	4.635366	chr10	68283765	68284046	SINE|Alu|AluSx	-	chr10	68282659	68297134	PBLD|ENST00000336578.5	-	68282659,68285347,68288482,68288930,68292009,68292128,68296265,68296885	68284289,68285410,68288661,68289019,68292039,68292238,68296364,68297134	0.975610
Peyers_patch_male_adult_37_years	chr3	195688656	195688657	195688656	+	High_confidence	6	6	9	0.541048	2.725481	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688650	195708777	MUC20-OT1|ENST00000630863.2	+	195688650,195689338,195689545,195708133	195688797,195689438,195689608,195708777	0.666667
Peyers_patch_male_adult_37_years	chr2	47369310	47369311	47369310	+	High_confidence	343	388	487	29.276704	5.607331	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369147	47387028	EPCAM|NM_002354.2	+	47369147,47373462,47373807,47375233,47377013,47378952,47379768,47385165,47386571	47369581,47373570,47374048,47375299,47377077,47379054,47379969,47385210,47387028	0.983573
Peyers_patch_male_adult_37_years	chr12	91179383	91179384	91179383	-	High_confidence	8	8	11	0.661281	3.121928	chr12	91179305	91179397	SINE|MIR|MIRb	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.909091
Peyers_patch_male_adult_37_years	chr19	7642274	7642328	7642313	+	High_confidence	11	11	62	3.727219	5.059927	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.741935
Peyers_patch_male_adult_37_years	chr2	85354337	85354343	85354337	-	High_confidence	15	15	29	1.743377	4.182006	chr2	85354216	85354326	SINE|MIR|MIR1_Amn	-	chr2	85349431	85354506	RETSAT|ENST00000409984.2	-	85349431,85350039,85350779,85354335	85349581,85350241,85351021,85354506	0.655172
Peyers_patch_male_adult_37_years	chr1	151369291	151369360	151369359	-	High_confidence	12	12	51	3.065938	4.907336	chr1	151369225	151369333	DNA|hAT-Tip100|MER91A	-	chr1	151369067	151370285	SELENBP1|ENST00000427867.2	-	151369067,151369441,151369712,151370200	151369189,151369554,151369769,151370285	0.509804
Peyers_patch_male_adult_37_years	chr2	240621568	240621580	240621568	+	RAMPAGE_only	10	10	25	1.502911	4.418296	chr2	240621552	240621586	DNA|hAT-Tip100|MER96B	-	chr2	240609545	240631170	STRG.25193.11	+	240609545,240616975,240618887,240629948	240616511,240617393,240623138,240631170	0.920000
Peyers_patch_male_adult_37_years	chr7	101308299	101308317	101308316	+	High_confidence	5	6	12	0.721397	3.095795	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.916667
Peyers_patch_male_adult_37_years	chr4	42428639	42428698	42428697	-	RAMPAGE_only	26	26	61	3.667103	5.198499	chr4	42428198	42428856	LINE|L2|L2a	+	chr4	42424391	42600012	STRG.38143.4	-	42424391,42443564,42444577,42446582,42451980,42455296,42455524,42464689,42464892,42485495,42503449,42507015,42596690	42440282,42443672,42444634,42446644,42452059,42455419,42455599,42464800,42465076,42485668,42503514,42507755,42600012	0.967213
Peyers_patch_male_adult_37_years	chr7	101218351	101218397	101218396	-	High_confidence	9	10	23	1.382678	3.879664	chr7	101218298	101218575	SINE|Alu|AluJr	-	chr7	101217422	101218366	PLOD3|ENST00000481461.1	-	101217422,101218279	101217899,101218366	0.695652
Peyers_patch_male_adult_37_years	chr4	16078214	16078229	16078214	-	RAMPAGE_only	4	4	8	0.480931	2.750000	chr4	16078196	16078275	LINE|L2|L2b	+	chr4	16076440	16084378	STRG.36974.12	-	16076440,16081075	16081029,16084378	0.875000
Peyers_patch_male_adult_37_years	chr14	100138794	100138814	100138810	+	RAMPAGE_only	3	3	11	0.661281	3.095795	chr14	100138741	100139027	LINE|L2|L2b	-	chr14	100019381	100140117	EVL|ENST00000544450.6	+	100019381,100084686,100097480,100123538,100126706,100128518,100129562,100132718,100135904,100137577,100137739	100019687,100084855,100097658,100123602,100126771,100128748,100129684,100132779,100135968,100137644,100140117	0.545455
Peyers_patch_male_adult_37_years	chr11	46375544	46375585	46375584	+	High_confidence	8	9	22	1.322562	3.784942	chr11	46375632	46375749	SINE|MIR|MIRb	+	chr11	46375023	46377350	DGKZ|ENST00000529698.1	+	46375023,46375431,46375850,46376065,46376327,46376523,46377072	46375045,46375631,46375951,46376145,46376397,46376564,46377350	0.863636
Peyers_patch_male_adult_37_years	chr11	75196374	75196403	75196374	+	High_confidence	9	9	17	1.021979	3.263933	chr11	75196317	75196417	LINE|CR1|L3	-	chr11	75196274	75200400	SLCO2B1|ENST00000528108.1	+	75196274,75200223	75196679,75200400	1.000000
Peyers_patch_male_adult_37_years	chr19	15682133	15682156	15682133	+	High_confidence	4	4	14	0.841630	3.324863	chr19	15682110	15682226	SINE|MIR|MIR3	-	chr19	15681500	15697143	CYP4F12|ENST00000546608.1	+	15681500,15683492,15685067,15695935,15696160,15696907	15682514,15684882,15685197,15696069,15696512,15697143	0.928571
Peyers_patch_male_adult_37_years	chr17	69325780	69325800	69325799	-	RAMPAGE_only	3	4	7	0.420815	2.584963	chr17	69325641	69325831	SINE|Alu|AluJo	+	chr17	69306762	69327090	STRG.130206.13	-	69306762,69308279,69309261,69313091,69314313,69327051	69306954,69308368,69309423,69313296,69325817,69327090	0.857143
Peyers_patch_male_adult_37_years	chr4	39544055	39544067	39544055	-	High_confidence	12	13	19	1.142212	3.616349	chr4	39543948	39544368	LTR|ERVK|LTR3B	-	chr4	39543398	39544935	STRG.38005.1	-	39543398	39544935	0.684211
Peyers_patch_male_adult_37_years	chr12	91179462	91179549	91179462	-	High_confidence	153	157	754	45.327793	6.731212	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.773210
Peyers_patch_male_adult_37_years	chr2	230925241	230925265	230925264	-	High_confidence	4	4	10	0.601164	3.121928	chr2	230925193	230925329	SINE|MIR|MIR3	+	chr2	230907317	230925226	GPR55|ENST00000444078.5	-	230907317,230909621,230925167	230908310,230911096,230925226	0.700000
Peyers_patch_male_adult_37_years	chr6	89656045	89656058	89656045	-	High_confidence	6	6	10	0.601164	3.321928	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89653966	89656383	STRG.56363.1	-	89653966,89655763	89654334,89656383	1.000000
Peyers_patch_male_adult_37_years	chr6	118651542	118651593	118651563	-	High_confidence	11	11	62	3.727219	5.031305	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118523836	118651578	STRG.57826.1	-	118523836,118565528,118632452,118651196	118523920,118566316,118632611,118651578	1.000000
Peyers_patch_male_adult_37_years	chr5	180991612	180991679	180991632	+	RAMPAGE_only	5	5	32	1.923726	3.949699	chr5	180991630	180991740	LINE|L2|L2b	-	chr5	180988863	181006727	STRG.52260.15	+	180988863,181002671	180997488,181006727	1.000000
Peyers_patch_male_adult_37_years	chr6	154527193	154527231	154527195	+	RAMPAGE_only	4	7	32	1.923726	4.018082	chr6	154526984	154527266	LTR|ERVL-MaLR|MLT1B	+	chr6	154542048	154542323	STRG.59856.1	+	154542048	154542323	0.625000
Peyers_patch_male_adult_37_years	chr16	70060140	70060155	70060140	-	High_confidence	3	3	6	0.360699	2.584963	chr16	70060137	70060272	SINE|Alu|AluSz	+	chr16	70036446	70061017	STRG.123706.9	-	70036446,70038904,70042350,70042929,70060063	70036578,70039100,70042416,70043003,70061017	0.500000
Peyers_patch_male_adult_37_years	chr1	148900909	148900938	148900909	+	High_confidence	19	22	40	2.404657	4.753056	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148900859	148989385	STRG.7824.4	+	148900859,148931799,148932112,148937746,148960653,148961836,148962195,148962427,148965483,148966542,148966838,148967725,148968835,148972179,148972510,148974513,148989183	148900985,148931923,148932288,148937864,148960785,148961956,148962288,148962640,148965642,148966656,148966976,148967905,148969030,148972344,148972592,148974605,148989385	0.925000
Peyers_patch_male_adult_37_years	chr19	55333909	55333975	55333974	-	High_confidence	6	6	41	2.464774	5.064869	chr19	55333705	55334001	LINE|L1|L1MB5	-	chr19	55319463	55334048	TMEM150B|ENST00000592891.1	-	55319463,55320390,55320557,55320968,55322647,55333903	55320166,55320458,55320617,55321093,55322743,55334048	0.560976
Peyers_patch_male_adult_37_years	chr19	52215792	52215829	52215807	+	RAMPAGE_only	4	4	10	0.601164	3.169925	chr19	52215807	52215838	LINE|L2|L2b	-	chr19	52201092	52226417	PPP2R1A|ENST00000462990.5	+	52201092,52201943,52205962,52211259,52212685,52212954,52215778,52216003,52216528,52219690,52220188,52220978,52222098,52225716,52225964	52201694,52202034,52206063,52211492,52212833,52213110,52215893,52216074,52216663,52219864,52220249,52221133,52222241,52225808,52226417	0.900000
Peyers_patch_male_adult_37_years	chr2	127765174	127765175	127765174	-	RAMPAGE_only	7	7	10	0.601164	2.947703	chr2	127765110	127765160	LINE|CR1|L3	-	chr2	127701021	127811147	WDR33|ENST00000322313.8	-	127701021,127708676,127709489,127709692,127713582,127717154,127719264,127721835,127722590,127722957,127723252,127724332,127724886,127725060,127726650,127763061,127764827,127765173,127768188,127768932,127770777,127811011	127706552,127708892,127709582,127709856,127714021,127717263,127720353,127721988,127722730,127723044,127723347,127724443,127724965,127725215,127726777,127763159,127764979,127765269,127768293,127769001,127771004,127811147	0.900000
Peyers_patch_male_adult_37_years	chr9	129010458	129010486	129010458	-	RAMPAGE_only	1	1	8	0.480931	2.807355	chr9	129010444	129010507	LINE|L2|L2a	-	chr9	129007791	129012016	SH3GLB2|ENST00000479237.5	-	129007791,129009105,129009452,129009770,129010119,129010669	129008791,129009346,129009467,129009871,129010209,129012016	0.500000
Peyers_patch_male_adult_37_years	chr12	53442427	53442450	53442427	+	High_confidence	3	3	9	0.541048	2.750000	chr12	53442238	53442542	SINE|Alu|AluSg4	-	chr12	53442554	53446315	PRR13|ENST00000549135.1	+	53442554,53442694,53443390,53446014	53442586,53442733,53443773,53446315	0.777778
Peyers_patch_male_adult_37_years	chr22	30611028	30611061	30611060	+	RAMPAGE_only	17	18	64	3.847452	5.019859	chr22	30611097	30611237	SINE|MIR|MIR3	+	chr22	30607203	30627060	TCN2|ENST00000407817.3	+	30607203,30610870,30612872,30614348,30615300,30615600,30617329,30622967,30626459	30607395,30611063,30612961,30614501,30615473,30615787,30617495,30623083,30627060	0.906250
Peyers_patch_male_adult_37_years	chr18	80148048	80148049	80148048	+	High_confidence	16	17	18	1.082096	3.969816	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.555556
Peyers_patch_male_adult_37_years	chr7	134527596	134527597	134527596	+	High_confidence	375	383	418	25.128670	6.774774	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.961722
Peyers_patch_male_adult_37_years	chr2	108451065	108451087	108451086	+	RAMPAGE_only	4	4	11	0.661281	3.321928	chr2	108451073	108451151	LINE|RTE-BovB|MamRTE1	-	chr2	108449883	108472899	GCC2|ENST00000409896.1	+	108449883,108451027,108452398,108468979,108469650,108472826	108449994,108451112,108452466,108469084,108472116,108472899	0.909091
Peyers_patch_male_adult_37_years	chr1	197691932	197691969	197691968	-	RAMPAGE_only	8	11	17	1.021979	3.750000	chr1	197690937	197692135	LINE|L1|L1MB1	+	chr1	197552254	197775192	DENND1B|ENST00000235453.8	-	197552254,197583151,197595207,197607072,197611930,197617658,197642710,197645689,197652234,197658299,197672036,197674119,197715030,197735585,197772867,197775138	197553112,197583253,197595333,197607174,197611976,197617759,197642821,197645743,197652315,197658369,197672156,197674169,197715074,197735796,197772932,197775192	0.705882
Peyers_patch_male_adult_37_years	chr20	34923048	34923051	34923050	+	High_confidence	3	4	6	0.360699	2.584963	chr20	34923000	34923231	SINE|MIR|MIRb	-	chr20	34922841	34927205	ACSS2|ENST00000494727.1	+	34922841,34925697,34926104,34926876,34927086	34923431,34925766,34926281,34926951,34927205	0.833333
Peyers_patch_male_adult_37_years	chr17	28352941	28352979	28352978	-	RAMPAGE_only	2	2	8	0.480931	2.750000	chr17	28352965	28353049	LINE|CR1|L3	+	chr17	28347660	28357463	POLDIP2|ENST00000618887.2	-	28347660,28349082,28350437,28350765,28351663,28352911,28353240,28353694,28354487,28355794,28357287	28348231,28349162,28350563,28350792,28351800,28353019,28353316,28353791,28354531,28355876,28357463	1.000000
Peyers_patch_male_adult_37_years	chr1	17005385	17005394	17005393	-	High_confidence	4	4	8	0.480931	2.521641	chr1	17005163	17005347	SINE|MIR|MIR3	-	chr1	17000282	17005395	ATP13A2|ENST00000508222.5	-	17000282,17000399,17002033,17002295,17004331,17004706,17005013,17005373	17000312,17000507,17002103,17002373,17004411,17004821,17005072,17005395	0.875000
Peyers_patch_male_adult_37_years	chr12	57532049	57532069	57532049	-	RAMPAGE_only	1	1	7	0.420815	2.584963	chr12	57531960	57532134	LINE|RTE-BovB|MamRTE1	+	chr12	57530616	57547120	DCTN2|ENST00000549394.5	-	57530616,57532014,57532212,57532571,57532732,57532983,57533237,57533952,57534291,57535055,57535483,57535748,57538252,57541363,57546027,57547027	57530775,57532106,57532315,57532643,57532810,57533022,57533303,57534097,57534452,57535154,57535545,57535845,57538347,57541372,57546096,57547120	0.857143
Peyers_patch_male_adult_37_years	chr11	46377191	46377204	46377191	+	High_confidence	2	3	11	0.661281	3.095795	chr11	46377234	46377297	LINE|L2|L2a	+	chr11	46377147	46379568	DGKZ|ENST00000529660.5	+	46377147,46378197,46378456,46378893,46379202,46379468	46377212,46378229,46378500,46379111,46379236,46379568	0.909091
Peyers_patch_male_adult_37_years	chr8	136530767	136530777	136530776	+	High_confidence	3	3	7	0.420815	2.584963	chr8	136530234	136530974	LTR|ERV1|LTR12C	-	chr8	136530770	137092183	LINC02055|ENST00000649576.1	+	136530770,136536977,136789834,136797273,136896984,136961739,137074249,137090409,137091340	136531006,136537059,136789889,136797370,136897078,136961851,137074367,137090503,137092183	0.714286
Peyers_patch_male_adult_37_years	chr22	35311038	35311071	35311070	+	High_confidence	5	5	20	1.202329	3.826875	chr22	35310706	35311148	LINE|L2|L2c	-	chr22	35311061	35323819	TOM1|ENST00000443206.2	+	35311061,35317876,35321958,35323027,35323495,35323767	35311127,35317961,35322037,35323177,35323630,35323819	0.850000
Peyers_patch_male_adult_37_years	chr14	39064898	39064924	39064898	-	RAMPAGE_only	5	5	11	0.661281	3.277613	chr14	39064766	39064897	SINE|Alu|FLAM_C	-	chr14	39064548	39067211	SEC23A|ENST00000553925.1	-	39064548,39067172	39064993,39067211	0.636364
Peyers_patch_male_adult_37_years	chr11	64242492	64242547	64242546	+	High_confidence	13	13	45	2.705240	4.437211	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.955556
Peyers_patch_male_adult_37_years	chr5	151080233	151080270	151080269	-	High_confidence	8	9	21	1.262445	3.576618	chr5	151080244	151080483	SINE|MIR|MIR	+	chr5	151078402	151081015	TNIP1|ENST00000522926.1	-	151078402,151080072,151080879	151078443,151080359,151081015	0.761905
Peyers_patch_male_adult_37_years	chr13	98734573	98734574	98734573	-	RAMPAGE_only	9	10	13	0.781514	3.546594	chr13	98734310	98734622	LINE|L1|L1PA6	+	chr13	98720526	98752654	STRG.108445.4	-	98720526,98721803,98723911,98726122,98726367,98726842	98721585,98721903,98724031,98726264,98726449,98752654	1.000000
Peyers_patch_male_adult_37_years	chr5	65988637	65988674	65988672	+	High_confidence	3	6	14	0.841630	3.085055	chr5	65988722	65989005	SINE|Alu|AluJb	+	chr5	65988632	66078936	ERBIN|ENST00000508515.1	+	65988632,65992709,65994746,66012048,66013548,66014668,66021321,66023289,66024305,66025479,66025847,66026301,66028273,66038382,66043076,66044136,66046352,66048666,66050782,66053405,66076315,66076874,66078422	65988682,65992907,65994864,66012127,66013638,66014725,66021385,66023364,66024450,66025552,66025977,66026417,66028343,66038482,66043198,66044310,66046538,66048781,66050966,66054951,66076408,66076949,66078936	0.785714
Peyers_patch_male_adult_37_years	chr1	167119987	167119992	167119987	+	RAMPAGE_only	4	5	12	0.721397	3.095795	chr1	167119617	167120033	LINE|L2|L2a	-	chr1	167125918	167129125	DUSP27|ENST00000485151.1	+	167125918,167128740	167126336,167129125	0.916667
Peyers_patch_male_adult_37_years	chr11	75728504	75728567	75728566	+	RAMPAGE_only	2	2	9	0.541048	2.750000	chr11	75728518	75728688	SINE|MIR|MIR3	-	chr11	75717888	75739592	STRG.94602.4	+	75717888,75719991,75727434,75727969	75717979,75720170,75727639,75739592	0.888889
Peyers_patch_male_adult_37_years	chr6	30830627	30830639	30830627	-	High_confidence	2	2	8	0.480931	3.000000	chr6	30830591	30830730	LTR|Gypsy|MamGypLTR1b	-	chr6	30812865	30830659	LINC00243|NR_130726.1	-	30812865,30830514	30814772,30830659	0.625000
Peyers_patch_male_adult_37_years	chr20	9333479	9333480	9333479	+	High_confidence	22	22	25	1.502911	3.069774	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9333292	9367178	STRG.139202.3	+	9333292,9337125,9338007,9338893,9362895,9365460	9333570,9337206,9338067,9339037,9362975,9367178	0.960000
Peyers_patch_male_adult_37_years	chr16	63617837	63617850	63617849	-	High_confidence	4	4	9	0.541048	2.750000	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63305115	63618033	STRG.123135.1	-	63305115,63334599,63531224,63617692	63305420,63334667,63531304,63618033	0.888889
Peyers_patch_male_adult_37_years	chr16	29963506	29963561	29963560	+	High_confidence	6	10	32	1.923726	4.625000	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963399	29968594	TMEM219|ENST00000569445.2	+	29963399,29968024	29963589,29968594	0.656250
Peyers_patch_male_adult_37_years	chr15	45396928	45396952	45396951	-	High_confidence	7	8	16	0.961863	3.640224	chr15	45396913	45397076	LINE|L2|L2a	+	chr15	45361125	45397259	STRG.116161.4	-	45361125,45364796,45366045,45366370,45368069,45369325,45376600,45396921	45364016,45364860,45366210,45366508,45368260,45369521,45376819,45397259	0.937500
Peyers_patch_male_adult_37_years	chr3	37988183	37988238	37988183	+	High_confidence	5	5	17	1.021979	4.087463	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38010819	STRG.27551.5	+	37988058,37993586,37993897,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38002862,38004254,38005791,38006180,38006448	37988238,37993732,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002787,38003313,38004399,38005974,38006252,38010819	0.823529
Peyers_patch_male_adult_37_years	chr3	139344537	139344560	139344547	+	High_confidence	25	25	71	4.268267	5.173657	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.873239
Peyers_patch_male_adult_37_years	chr15	59609758	59609759	59609758	+	RAMPAGE_only	4	4	7	0.420815	2.521641	chr15	59609756	59609836	LINE|L2|L2b	-	chr15	59611782	59620011	GCNT3|NM_004751.2	+	59611782,59616691,59618178	59611981,59616881,59620011	0.571429
Peyers_patch_male_adult_37_years	chr3	57267779	57267782	57267781	+	RAMPAGE_only	6	8	10	0.601164	2.921928	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.800000
Peyers_patch_male_adult_37_years	chr9	123652014	123652040	123652014	-	RAMPAGE_only	2	2	8	0.480931	2.521641	chr9	123651992	123652144	DNA|hAT-Ac|OldhAT1	-	chr9	123401809	123676791	DENND1A|ENST00000394215.6	-	123401809,123403401,123440359,123450692,123452275,123454738,123457347,123457792,123557569,123583168,123609435,123630375,123652012,123667025,123671290,123676719	123401912,123403490,123440491,123450749,123452347,123454779,123457435,123457897,123557695,123583270,123609481,123630476,123652123,123667079,123671371,123676791	0.750000
Peyers_patch_male_adult_37_years	chr2	128173725	128173738	128173737	+	RAMPAGE_only	2	2	6	0.360699	2.584963	chr2	128173483	128173742	LINE|L1|L1ME1	-	chr2	128091310	128195677	UGGT1|ENST00000259253.10	+	128091310,128097428,128103931,128107937,128109633,128113083,128115123,128116264,128120355,128121198,128123185,128127360,128129028,128133140,128134875,128138716,128143093,128145802,128152783,128155488,128156391,128157251,128159513,128160459,128161137,128164729,128170287,128171204,128172572,128173780,128174772,128176813,128177831,128178467,128179785,128180889,128182129,128183674,128186682,128187448,128189716	128091415,128097564,128104014,128108068,128109746,128113258,128115220,128116343,128120456,128121298,128123246,128127452,128129179,128133260,128134961,128138852,128143225,128145967,128152904,128155587,128156415,128157346,128159720,128160591,128161268,128164825,128170390,128171284,128172762,128173939,128174858,128176898,128177920,128178569,128179870,128181072,128182290,128183789,128186799,128187614,128195677	0.500000
Peyers_patch_male_adult_37_years	chr22	23705437	23705445	23705443	-	RAMPAGE_only	3	6	14	0.841630	3.546594	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.928571
Peyers_patch_male_adult_37_years	chr12	109053951	109053984	109053956	-	High_confidence	8	9	32	1.923726	4.256565	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.781250
Peyers_patch_male_adult_37_years	chr6	31880375	31880409	31880408	+	RAMPAGE_only	3	3	14	0.841630	3.521641	chr6	31880399	31880568	DNA|hAT-Charlie|MER5A	+	chr6	31877825	31884139	STRG.54093.4	+	31877825,31880243	31878078,31884139	1.000000
Peyers_patch_male_adult_37_years	chr1	119829443	119829459	119829458	+	High_confidence	6	6	10	0.601164	2.947703	chr1	119829457	119829519	SINE|MIR|MIR3	-	chr1	119829324	119845178	STRG.7371.1	+	119829324,119834891,119844192,119844455	119829496,119835799,119844281,119845178	0.800000
Peyers_patch_male_adult_37_years	chr7	99410146	99410147	99410146	+	High_confidence	11	11	16	0.961863	3.500000	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.500000
Peyers_patch_male_adult_37_years	chr3	155085060	155085078	155085077	+	High_confidence	11	11	24	1.442794	3.969002	chr3	155085055	155085093	LINE|L2|L2	-	chr3	155084167	155183729	MME|ENST00000615825.1	+	155084167,155085058,155114993,155116478,155116663,155116867,155118745,155138101,155140190,155141990,155142236,155143442,155144358,155147143,155148549,155160389,155166901,155168491,155168731,155172116,155172535,155180359	155084327,155085094,155115155,155116559,155116759,155116986,155118811,155138236,155140292,155142127,155142330,155143571,155144457,155147224,155148653,155160448,155167021,155168625,155168797,155172212,155172612,155183729	0.958333
Peyers_patch_male_adult_37_years	chr16	75518836	75518900	75518836	-	RAMPAGE_only	7	8	23	1.382678	3.936260	chr16	75518741	75519055	SINE|Alu|AluSz	+	chr16	75471900	75520125	STRG.124075.3	-	75471900,75481816,75490613,75494939,75504680,75505154	75479844,75481891,75490769,75502814,75504824,75520125	0.956522
Peyers_patch_male_adult_37_years	chr11	64226142	64226180	64226158	-	High_confidence	64	66	329	19.778307	7.335078	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.990881
Peyers_patch_male_adult_37_years	chr16	53445775	53445794	53445788	+	High_confidence	4	4	12	0.721397	3.095795	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.500000
Peyers_patch_male_adult_37_years	chr21	39655114	39655135	39655134	+	RAMPAGE_only	4	4	10	0.601164	2.503258	chr21	39655016	39655325	LTR|ERVL|MLT2B4	-	chr21	39642365	39662888	STRG.143230.2	+	39642365,39646391,39659752,39660559	39646261,39657599,39659912,39662888	0.800000
Peyers_patch_male_adult_37_years	chr16	21048703	21048704	21048703	-	High_confidence	60	60	63	3.787335	5.189898	chr16	21042672	21048703	LINE|L1|L1PA2	-	chr16	21036683	21048694	STRG.121782.1	-	21036683,21037760,21039851,21042026,21048605	21036848,21037980,21039943,21042203,21048694	0.682540
Peyers_patch_male_adult_37_years	chr6	101203201	101203262	101203247	+	High_confidence	25	28	163	9.798979	6.000592	chr6	101203057	101203452	LTR|ERVL-MaLR|MLT1A1	+	chr6	101203252	101686354	STRG.56712.1	+	101203252,101205076,101244629,101398984,101621948,101626379,101676622,101682552,101686179	101203374,101205143,101244656,101399392,101622116,101626637,101676804,101682606,101686354	0.552147
Peyers_patch_male_adult_37_years	chr7	87519338	87519421	87519338	-	High_confidence	5	5	52	3.126055	4.616066	chr7	87519184	87519318	SINE|5S-Deu-L2|AmnSINE1	-	chr7	87505901	87518963	ABCB1|ENST00000475929.5	-	87505901,87509274,87515230,87516508,87518880	87506043,87509481,87515428,87516665,87518963	0.980769
Peyers_patch_male_adult_37_years	chr10	102368787	102368832	102368831	+	High_confidence	2	2	9	0.541048	3.169925	chr10	102368824	102368910	SINE|MIR|MIRc	+	chr10	102367940	102382705	STRG.88448.5	+	102367940,102368738,102369210,102369710,102369860,102370173,102370383,102370706,102375358,102376271,102376559,102376934,102379283,102379520,102380505,102381126,102382055	102368454,102368832,102369387,102369775,102369984,102370245,102370478,102370860,102375584,102376432,102376800,102377128,102379434,102380362,102380686,102381255,102382705	0.555556
Peyers_patch_male_adult_37_years	chr11	120220434	120220451	120220434	+	RAMPAGE_only	5	5	11	0.661281	3.121928	chr11	120220409	120220798	LINE|L2|L2c	-	chr11	120210766	120229240	STRG.96954.1	+	120210766,120211733,120212763,120218157,120226815,120228867	120211510,120212726,120218126,120225795,120226996,120229240	0.909091
Peyers_patch_male_adult_37_years	chr1	200298329	200298401	200298329	-	High_confidence	28	29	100	6.011644	5.617429	chr1	200297863	200298573	LINE|L2|L2c	+	chr1	200297022	200298234	STRG.10680.1	-	200297022	200298234	0.870000
Peyers_patch_male_adult_37_years	chr8	102929958	102929990	102929989	+	High_confidence	5	5	17	1.021979	3.500000	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.764706
Peyers_patch_male_adult_37_years	chr17	82081606	82081614	82081606	-	RAMPAGE_only	12	12	20	1.202329	3.681881	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	0.950000
Peyers_patch_male_adult_37_years	chr16	70060492	70060513	70060492	-	High_confidence	4	4	17	1.021979	3.250000	chr16	70060272	70060562	SINE|Alu|AluY	+	chr16	70036446	70061017	STRG.123706.9	-	70036446,70038904,70042350,70042929,70060063	70036578,70039100,70042416,70043003,70061017	0.941176
Peyers_patch_male_adult_37_years	chr6	31186054	31186118	31186117	-	High_confidence	224	227	582	34.987766	7.177080	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31167430	31186528	STRG.54021.10	-	31167430,31177638	31174270,31186528	0.793814
Peyers_patch_male_adult_37_years	chr2	91766680	91766710	91766703	+	High_confidence	33	33	105	6.312226	5.258360	chr2	91766515	91766814	LINE|L2|L2	-	chr2	91766692	91786949	STRG.18026.1	+	91766692,91772820,91774825,91775113,91776028,91780409	91767439,91772890,91774897,91775393,91776107,91786949	0.990476
Peyers_patch_male_adult_37_years	chr1	227142956	227142957	227142956	-	RAMPAGE_only	9	9	9	0.541048	2.947703	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.777778
Peyers_patch_male_adult_37_years	chr19	55056783	55056798	55056796	-	RAMPAGE_only	4	5	9	0.541048	3.000000	chr19	55056791	55057338	LINE|L1|L1MB7	+	chr19	55027592	55053928	AC011476.2|ENST00000585492.1	-	55027592,55044904,55047386,55048328,55048658,55053752	55027862,55045309,55047488,55048541,55048763,55053928	0.666667
Peyers_patch_male_adult_37_years	chr22	41471825	41471834	41471825	+	RAMPAGE_only	6	6	19	1.142212	3.836592	chr22	41471830	41472060	SINE|MIR|MIR	+	chr22	41469159	41511966	ACO2|ENST00000471094.1	+	41469159,41507790,41511875	41469508,41508049,41511966	0.526316
Peyers_patch_male_adult_37_years	chr18	9588093	9588131	9588120	-	RAMPAGE_only	4	4	12	0.721397	3.418296	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9547712	9614505	PPP4R1|ENST00000285124.12	-	9547712,9549196,9550051,9550277,9553321,9557220,9559418,9561979,9562921,9563377,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9595017,9614225,9614477	9547952,9549338,9550186,9550398,9553422,9557382,9559604,9562075,9563046,9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9595102,9614270,9614505	1.000000
Peyers_patch_male_adult_37_years	chr1	33021446	33021455	33021446	-	RAMPAGE_only	8	8	16	0.961863	3.589898	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.937500
Peyers_patch_male_adult_37_years	chr21	46256844	46256893	46256892	-	High_confidence	6	6	16	0.961863	3.589898	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.687500
Peyers_patch_male_adult_37_years	chr12	123390725	123390761	123390760	+	High_confidence	17	18	58	3.486753	5.189793	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	1.000000
Peyers_patch_male_adult_37_years	chr2	240617095	240617127	240617095	+	RAMPAGE_only	2	2	11	0.661281	2.921928	chr2	240617066	240617186	LTR|ERVL-MaLR|MLT1F2	+	chr2	240609545	240631170	STRG.25193.11	+	240609545,240616975,240618887,240629948	240616511,240617393,240623138,240631170	0.909091
Peyers_patch_male_adult_37_years	chr7	104926626	104926641	104926626	-	High_confidence	96	100	191	11.482239	6.270539	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104911915	104926630	LHFPL3-AS2|ENST00000453666.2	-	104911915,104915705,104917559,104920384,104926452	104912076,104915827,104917980,104920425,104926630	0.727749
Peyers_patch_male_adult_37_years	chr7	30577898	30577941	30577898	-	High_confidence	2	2	6	0.360699	2.584963	chr7	30576831	30578376	LTR|ERV1|LOR1-int	-	chr7	30548356	30577779	LOC401320|NR_038889.1	-	30548356,30552099,30561465,30563730,30568832,30576563,30577648	30550781,30552179,30562128,30563998,30568989,30576710,30577779	0.833333
Peyers_patch_male_adult_37_years	chr12	126030583	126030633	126030632	+	High_confidence	53	54	83	4.989664	5.361317	chr12	126030296	126030746	LTR|ERVK|LTR22A	+	chr12	126030587	126033461	STRG.105063.1	+	126030587,126032473,126033073	126030821,126032552,126033461	0.783133
Peyers_patch_male_adult_37_years	chr11	26683979	26683985	26683979	-	RAMPAGE_only	9	9	15	0.901747	3.640224	chr11	26683914	26684001	SINE|MIR|MIRc	+	chr11	26667018	26722024	SLC5A12|ENST00000396005.7	-	26667018,26673401,26678711,26681054,26683756,26686476,26692488,26697163,26698405,26703530,26703792,26709311,26711306,26712640,26721375	26671251,26673529,26678815,26681221,26683843,26686544,26692601,26697252,26698535,26703671,26703947,26709379,26711358,26712706,26722024	0.600000
Peyers_patch_male_adult_37_years	chr3	47658638	47658642	47658641	-	RAMPAGE_only	3	3	7	0.420815	2.521641	chr3	47658272	47658713	LINE|L1|L1MB7	-	chr3	47585887	47781915	SMARCC1|NM_003074.3	-	47585887,47590660,47610065,47622206,47635189,47636021,47638724,47661293,47662333,47670657,47675474,47676628,47678197,47680436,47686048,47689386,47693240,47701277,47706408,47710682,47714414,47720665,47729024,47736033,47738028,47745907,47772816,47781602	47588306,47590837,47610327,47622341,47635344,47636136,47638780,47661455,47662592,47670717,47675588,47676782,47678311,47680508,47686170,47689424,47693300,47701402,47706530,47710808,47714490,47720735,47729094,47736126,47738110,47745993,47772936,47781915	0.857143
Peyers_patch_male_adult_37_years	chr3	119219375	119219376	119219375	-	RAMPAGE_only	14	14	16	0.961863	3.506891	chr3	119219340	119219668	LINE|L2|L2	-	chr3	119211778	119227131	STRG.31184.12	-	119211778,119226808	119224245,119227131	0.937500
Peyers_patch_male_adult_37_years	chr9	137427498	137427533	137427514	+	RAMPAGE_only	5	5	18	1.082096	3.969816	chr9	137427510	137427566	DNA|MULE-MuDR|Ricksha_c	-	chr9	137423383	137434406	STRG.82751.3	+	137423383,137423475,137426247,137428881,137430783,137431074,137431235,137433028,137433204,137433964,137434223	137423443,137423834,137428141,137429383,137430843,137431100,137431341,137433074,137433864,137434079,137434406	0.944444
Peyers_patch_male_adult_37_years	chr19	38110041	38110049	38110048	+	High_confidence	7	8	16	0.961863	3.500000	chr19	38110026	38110080	LINE|L2|L2a	-	chr19	38110198	38119493	SIPA1L3|ENST00000594553.1	+	38110198,38119305	38110384,38119493	0.750000
Peyers_patch_male_adult_37_years	chr9	128115080	128115169	128115150	-	RAMPAGE_only	10	10	43	2.585007	4.879526	chr9	128115112	128115246	SINE|MIR|MIRb	+	chr9	128108580	128118580	STRG.82126.3	-	128108580,128113372,128117709,128117922	128113263,128115289,128117835,128118580	1.000000
Peyers_patch_male_adult_37_years	chr9	545248	545253	545252	+	High_confidence	4	4	9	0.541048	2.947703	chr9	545229	545562	LINE|L2|L2	-	chr9	544835	549531	STRG.75713.8	+	544835	549531	1.000000
Peyers_patch_male_adult_37_years	chr1	1655378	1655475	1655409	-	RAMPAGE_only	38	38	98	5.891411	5.956543	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635315	1658210	STRG.162.5	-	1635315,1635936,1636332,1636681,1636896,1637080,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657255,1657374	1635856,1636126,1636481,1636798,1637004,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657302,1658210	0.959184
Peyers_patch_male_adult_37_years	chr3	124938154	124938155	124938154	-	RAMPAGE_only	52	52	52	3.126055	4.089085	chr3	124938000	124938162	LTR|ERVL|LTR79	+	chr3	124905441	124934751	MUC13|ENST00000616727.4	-	124905441,124908146,124910414,124912103,124913110,124913561,124916316,124920233,124922196,124923526,124927531,124934660	124906742,124908348,124910499,124912141,124913240,124913681,124916480,124920289,124922303,124923649,124927993,124934751	1.000000
Peyers_patch_male_adult_37_years	chr1	15758297	15758298	15758297	+	High_confidence	6	6	6	0.360699	2.584963	chr1	15758111	15758311	SINE|MIR|MIRb	-	chr1	15758418	15786594	FBLIM1|ENST00000375766.7	+	15758418,15764495,15764963,15767375,15768527,15770408,15774617,15777169,15784547	15758848,15764685,15765233,15767563,15768630,15770578,15774796,15777287,15786594	1.000000
Peyers_patch_male_adult_37_years	chr14	57274833	57274843	57274842	+	RAMPAGE_only	5	6	10	0.601164	3.321928	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	1.000000
Peyers_patch_male_adult_37_years	chr1	226871348	226871364	226871348	+	High_confidence	2	2	12	0.721397	3.084963	chr1	226871299	226871488	SINE|MIR|MIR3	-	chr1	226871267	226896098	PSEN2|ENST00000366782.5	+	226871267,226875364,226880468,226881887,226883704,226885537,226888090,226888828,226890034,226891277,226891742,226894006,226895423	226871404,226875550,226880724,226882048,226883919,226885679,226888158,226889049,226890133,226891361,226891844,226894125,226896098	1.000000
Peyers_patch_male_adult_37_years	chr5	176411455	176411459	176411455	-	RAMPAGE_only	3	5	9	0.541048	2.750000	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.666667
Peyers_patch_male_adult_37_years	chr7	2586041	2586042	2586041	+	RAMPAGE_only	8	8	8	0.480931	2.500000	chr7	2585844	2586108	DNA|hAT-Charlie|MER58D	-	chr7	2589904	2598736	IQCE|ENST00000490913.1	+	2589904,2593021,2594885,2598464	2590106,2593126,2594976,2598736	0.500000
Peyers_patch_male_adult_37_years	chr8	25342488	25342502	25342501	+	RAMPAGE_only	4	4	10	0.601164	3.121928	chr8	25342534	25342606	SINE|Alu|AluSx3	+	chr8	25344463	25401756	STRG.70459.3	+	25344463,25351730,25358962,25363046,25364625,25366869,25368191,25368570,25369555,25372558,25373617,25374563,25377304,25380304,25382673,25388808,25390205,25391895,25392795,25395542,25399910,25400928	25345611,25351826,25359061,25363141,25364704,25366970,25368250,25368725,25369641,25372718,25373658,25374654,25377424,25380394,25382778,25389232,25390287,25391980,25392882,25395719,25399994,25401756	0.900000
Peyers_patch_male_adult_37_years	chr9	88418833	88418877	88418876	+	RAMPAGE_only	2	2	6	0.360699	2.584963	chr9	88418784	88418941	SINE|MIR|MIR	+	chr9	88389370	88468477	SPIN1|ENST00000483785.1	+	88389370,88426381,88448940,88462495,88468371	88389410,88426591,88448989,88462749,88468477	0.500000
Peyers_patch_male_adult_37_years	chr16	89904202	89904204	89904202	+	RAMPAGE_only	3	6	8	0.480931	2.750000	chr16	89904174	89904222	LINE|CR1|L3	+	chr16	89895989	89911350	TCF25|ENST00000570116.6	+	89895989,89898556,89898766,89900634,89904117,89906193,89907242,89910590,89911079	89896083,89898649,89898872,89900794,89905096,89906284,89907322,89910663,89911350	1.000000
Peyers_patch_male_adult_37_years	chr5	103129650	103129691	103129650	+	High_confidence	3	3	8	0.480931	2.500000	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	1.000000
Peyers_patch_male_adult_37_years	chr19	5847518	5847519	5847518	+	High_confidence	12	12	12	0.721397	3.418296	chr19	5847388	5847625	LTR|ERV1|LTR7B	+	chr19	5847466	5858239	AC024592.2|ENST00000589276.1	+	5847466,5852503,5854570,5857615	5847768,5852673,5854662,5858239	0.583333
Peyers_patch_male_adult_37_years	chr11	87359798	87359806	87359805	+	High_confidence	13	14	26	1.563027	4.209867	chr11	87359683	87359924	LTR|ERVL|LTR18A	+	chr11	87359791	87663025	STRG.95300.1	+	87359791,87362356,87372791,87553298,87658604	87359950,87362476,87372868,87553369,87663025	0.538462
Peyers_patch_male_adult_37_years	chr5	147839194	147839195	147839194	-	High_confidence	8	10	10	0.601164	2.725481	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.500000
Peyers_patch_male_adult_37_years	chr6	43502209	43502210	43502209	+	High_confidence	5	6	7	0.420815	2.584963	chr6	43502114	43502254	SINE|MIR|MIR3	-	chr6	43501525	43506553	TJAP1|ENST00000454762.1	+	43501525,43502282,43503400,43503622	43501687,43502349,43503508,43506553	0.857143
Peyers_patch_male_adult_37_years	chr1	1721622	1721689	1721636	-	High_confidence	37	38	132	7.935370	6.204923	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.810606
Peyers_patch_male_adult_37_years	chr19	15681895	15681974	15681956	+	High_confidence	24	25	130	7.815137	5.058752	chr19	15681898	15682076	SINE|MIR|MIRb	-	chr19	15681500	15697143	CYP4F12|ENST00000546608.1	+	15681500,15683492,15685067,15695935,15696160,15696907	15682514,15684882,15685197,15696069,15696512,15697143	1.000000
Peyers_patch_male_adult_37_years	chr16	29736923	29736924	29736923	-	High_confidence	40	43	57	3.426637	5.403998	chr16	29736740	29737042	LTR|ERVL-MaLR|THE1C	-	chr16	29730689	29736912	STRG.122703.1	-	29730689,29732187,29736632,29736823	29731538,29736296,29736707,29736912	0.929825
Peyers_patch_male_adult_37_years	chr19	49867884	49867885	49867884	-	High_confidence	8	8	10	0.601164	3.121928	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49861203	49867886	PNKP|ENST00000322344.7	-	49861203,49861448,49861607,49861771,49862043,49862184,49862370,49862537,49862689,49863688,49863963,49864178,49864323,49865126,49866398,49867053,49867468	49861365,49861510,49861695,49861881,49862105,49862281,49862463,49862608,49862738,49863760,49864071,49864236,49864403,49865426,49866445,49867217,49867886	1.000000
Peyers_patch_male_adult_37_years	chr19	58312069	58312070	58312069	+	RAMPAGE_only	6	7	9	0.541048	2.750000	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.888889
Peyers_patch_male_adult_37_years	chr20	34923109	34923110	34923109	+	High_confidence	8	8	11	0.661281	2.845351	chr20	34923000	34923231	SINE|MIR|MIRb	-	chr20	34922841	34927205	ACSS2|ENST00000494727.1	+	34922841,34925697,34926104,34926876,34927086	34923431,34925766,34926281,34926951,34927205	1.000000
Peyers_patch_male_adult_37_years	chr19	40280802	40280849	40280831	-	RAMPAGE_only	3	3	12	0.721397	3.277613	chr19	40280545	40281038	LINE|L2|L2a	+	chr19	40280220	40282027	STRG.136737.1	-	40280220	40282027	0.833333
Peyers_patch_male_adult_37_years	chr11	64266391	64266392	64266391	+	RAMPAGE_only	7	7	11	0.661281	3.095795	chr11	64266346	64266492	DNA|hAT-Ac|OldhAT1	+	chr11	64265177	64267921	STRG.93325.6	+	64265177,64265309,64265885,64266314,64266494,64267184,64267352	64265227,64265502,64266202,64266404,64266552,64267271,64267921	0.636364
Peyers_patch_male_adult_37_years	chr5	140697980	140697981	140697980	+	RAMPAGE_only	9	9	12	0.721397	3.027169	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140691682	140699248	HARS2|ENST00000642452.1	+	140691682,140693590,140693934,140694184,140695507,140695737,140696028,140696520,140696942,140697163,140697568,140697931,140698492	140691756,140693665,140694054,140694280,140695633,140695845,140696201,140696614,140697070,140697406,140697685,140698078,140699248	0.750000
Peyers_patch_male_adult_37_years	chr8	144160991	144161012	144160991	+	High_confidence	5	7	12	0.721397	3.418296	chr8	144160811	144161348	LTR|ERVL-MaLR|MLT1E2	-	chr8	144161024	144261927	MROH1|ENST00000528919.5	+	144161024,144163770,144168294,144179454,144180177,144180424,144190783,144191714,144192308,144199121,144200427,144220599,144223107,144238755,144239034,144239322,144239613,144240100,144240569,144240991,144241394,144242368,144242601,144243493,144243862,144244221,144244443,144245155,144247300,144247566,144248876,144250211,144254812,144255508,144258776,144259239,144259910,144260185,144260676,144260906,144261113,144261283,144261654	144161089,144163848,144168440,144179586,144180340,144180523,144190935,144191855,144192401,144199200,144200541,144220673,144223230,144238863,144239179,144239363,144239755,144240153,144240677,144241111,144241517,144242515,144242628,144243616,144243942,144244336,144244539,144245260,144247436,144247679,144249029,144250366,144254978,144255705,144258914,144259354,144260057,144260374,144260832,144261041,144261216,144261349,144261927	0.833333
Peyers_patch_male_adult_37_years	chr9	113375494	113375536	113375534	-	High_confidence	10	16	46	2.765356	4.852856	chr9	113375358	113375529	SINE|MIR|MIR3	-	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	0.934783
Peyers_patch_male_adult_37_years	chr17	30325296	30325312	30325296	-	RAMPAGE_only	3	3	12	0.721397	2.913977	chr17	30325186	30325349	LINE|L2|L2c	-	chr17	30316347	30334047	TMIGD1|ENST00000328886.4	-	30316347,30317192,30318809,30324815,30329250,30332051,30333999	30316690,30317233,30318913,30325094,30329529,30332158,30334047	0.750000
Peyers_patch_male_adult_37_years	chr19	42516910	42516966	42516951	-	RAMPAGE_only	3	3	11	0.661281	3.027169	chr19	42516941	42518139	LINE|L1|L1MB3	+	chr19	42509206	42528481	CEACAM1|ENST00000599389.1	-	42509206,42510888,42512349,42516772,42521266,42521923,42527040,42528310	42509228,42510920,42512479,42516865,42521521,42522202,42527400,42528481	0.727273
Peyers_patch_male_adult_37_years	chr2	240022172	240022236	240022172	-	RAMPAGE_only	25	25	60	3.606986	4.392977	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.966667
Peyers_patch_male_adult_37_years	chr17	10802394	10802401	10802394	+	RAMPAGE_only	5	5	10	0.601164	3.121928	chr17	10802319	10802484	SINE|MIR|MIRb	-	chr17	10844628	10848310	STRG.125957.1	+	10844628,10847891	10844964,10848310	0.500000
Peyers_patch_male_adult_37_years	chr11	65439264	65439367	65439360	+	RAMPAGE_only	50	50	163	9.798979	5.751103	chr11	65439400	65439684	SINE|Alu|AluSz6	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.993865
Peyers_patch_male_adult_37_years	chr16	69990789	69990828	69990789	-	RAMPAGE_only	5	5	19	1.142212	3.572431	chr16	69990692	69991148	LINE|L1|L1M5	+	chr16	69977605	70021930	STRG.123706.4	-	69977605,69978076,69978221,69982349,69982657,69986380,69990596,69996068,69996389,70010750,70011840,70014103,70018046,70021823	69978003,69978112,69978282,69982494,69982757,69986509,69993248,69996226,69996468,70010856,70011929,70014167,70018097,70021930	0.526316
Peyers_patch_male_adult_37_years	chr13	24925924	24925963	24925924	+	High_confidence	5	5	19	1.142212	4.169925	chr13	24925661	24926143	LTR|ERVK|LTR22A	+	chr13	24925964	24934682	STRG.105742.1	+	24925964,24933002,24933745	24926296,24933135,24934682	0.684211
Peyers_patch_male_adult_37_years	chr4	84572847	84572855	84572847	-	RAMPAGE_only	8	8	14	0.841630	2.985228	chr4	84572706	84572860	LINE|L2|L2	+	chr4	84571851	84583606	STRG.39590.1	-	84571851,84583102	84572890,84583606	0.928571
Peyers_patch_male_adult_37_years	chr17	50737312	50737391	50737390	+	RAMPAGE_only	9	9	47	2.825472	4.613251	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50719598	50743792	LUC7L3|ENST00000504563.6	+	50719598,50736959,50737286,50740305,50741101,50741656,50743705	50719831,50737026,50737479,50740345,50741246,50741731,50743792	0.510638
Peyers_patch_male_adult_37_years	chr6	158287592	158287603	158287592	+	High_confidence	2	3	8	0.480931	2.500000	chr6	158287423	158287746	LINE|L2|L2c	-	chr6	158287550	158312358	STRG.60110.9	+	158287550,158312050	158287837,158312358	0.750000
Peyers_patch_male_adult_37_years	chr3	195689355	195689370	195689360	+	High_confidence	6	7	15	0.901747	3.807355	chr3	195689376	195689522	LINE|L1|L1MC5a	+	chr3	195689374	195696425	STRG.35792.81	+	195689374,195691312	195691204,195696425	0.600000
Peyers_patch_male_adult_37_years	chr19	58306086	58306142	58306115	+	High_confidence	6	7	19	1.142212	4.058814	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58306634	ERVK3-1|ENST00000434052.5	+	58305376,58306087	58305445,58306634	0.526316
Peyers_patch_male_adult_37_years	chr4	122279627	122279657	122279627	+	RAMPAGE_only	4	4	10	0.601164	2.921928	chr4	122278929	122279676	DNA|TcMar-Mariner|HSMAR2	-	chr4	122278152	122333809	STRG.41352.15	+	122278152,122281535,122286540,122289086,122301299,122304797,122305876,122307948,122309265,122313627,122315461,122316347,122316731,122318146,122324426,122325229,122328103,122331325,122333628	122279981,122281774,122286785,122289192,122301397,122304983,122306045,122308160,122309464,122313687,122315688,122316548,122316862,122318270,122324536,122325917,122328357,122331541,122333809	1.000000
Peyers_patch_male_adult_37_years	chr6	36540276	36540277	36540276	-	RAMPAGE_only	31	32	34	2.043959	4.415458	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36547470	STK38|ENST00000229812.7	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540207,36547470	0.852941
Peyers_patch_male_adult_37_years	chr1	12356414	12356435	12356414	+	RAMPAGE_only	4	5	10	0.601164	2.503258	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12311525	12373848	STRG.665.4	+	12311525,12311812,12314114,12318071,12319496,12321808,12322535,12323705,12327647,12329828,12333225,12335704,12341782,12342898,12345373,12346604,12348822,12349163,12353973,12355898,12356397,12358458,12362719,12363071,12368467,12369466,12373749	12311625,12311925,12314327,12318337,12319630,12321964,12322746,12323780,12327854,12329918,12333366,12335827,12341885,12343051,12345509,12346652,12348973,12349374,12354221,12356090,12356524,12358601,12362850,12363247,12368591,12369702,12373848	0.700000
Peyers_patch_male_adult_37_years	chr2	240617012	240617035	240617012	+	RAMPAGE_only	6	6	12	0.721397	3.251629	chr2	240616628	240617072	LTR|ERVL-MaLR|MLT1F2	+	chr2	240609545	240631170	STRG.25193.11	+	240609545,240616975,240618887,240629948	240616511,240617393,240623138,240631170	1.000000
Peyers_patch_male_adult_37_years	chr8	140755418	140755449	140755428	-	RAMPAGE_only	2	2	11	0.661281	3.121928	chr8	140755303	140755648	LINE|L2|L2a	+	chr8	140746449	140764401	PTK2|ENST00000519899.5	-	140746449,140752231,140761164,140764233	140746860,140752316,140761262,140764401	0.545455
Peyers_patch_male_adult_37_years	chr7	128622497	128622529	128622497	+	RAMPAGE_only	10	12	30	1.803493	4.349192	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.933333
Peyers_patch_male_adult_37_years	chr16	89502277	89502288	89502284	-	High_confidence	8	8	32	1.923726	4.163910	chr16	89502238	89502397	LINE|L2|L2	+	chr16	89500986	89502066	STRG.124808.1	-	89500986	89502066	0.875000
Peyers_patch_male_adult_37_years	chr19	17197815	17197857	17197856	+	High_confidence	3	5	14	0.841630	3.521641	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	0.857143
Peyers_patch_male_adult_37_years	chr1	179517522	179517558	179517545	+	RAMPAGE_only	12	12	26	1.563027	4.168296	chr1	179516075	179517979	LINE|L1|L1PB1	-	chr1	179491702	179554735	AXDND1|ENST00000484883.1	+	179491702,179492854,179509295,179525333,179528326,179532969,179533794,179534729,179554511	179491737,179492951,179509403,179525447,179528431,179533104,179533877,179534962,179554735	0.653846
Peyers_patch_male_adult_37_years	chr1	202551696	202551737	202551726	+	High_confidence	3	3	12	0.721397	3.418296	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202551312	202552264	STRG.10877.1	+	202551312	202552264	0.666667
Peyers_patch_male_adult_37_years	chr9	113375575	113375605	113375575	-	High_confidence	2	2	8	0.480931	2.750000	chr9	113375358	113375529	SINE|MIR|MIR3	-	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	1.000000
Peyers_patch_male_adult_37_years	chr5	147839237	147839238	147839237	-	High_confidence	6	6	9	0.541048	3.000000	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.777778
Peyers_patch_male_adult_37_years	chr1	110041824	110041837	110041836	+	High_confidence	3	4	6	0.360699	2.584963	chr1	110041871	110041959	LINE|L1|L1ME4b	+	chr1	110041170	110074641	STRIP1|ENST00000473429.5	+	110041170,110043087,110043638,110044839,110045014,110046679,110047541,110047771,110049111,110050955,110051682,110053664,110072454,110074126	110041861,110043270,110043856,110044905,110045078,110046751,110047616,110047869,110050409,110051060,110051887,110054802,110072596,110074641	0.666667
Peyers_patch_male_adult_37_years	chr1	15758209	15758234	15758211	+	High_confidence	4	7	17	1.021979	3.169249	chr1	15758111	15758311	SINE|MIR|MIRb	-	chr1	15758418	15786594	FBLIM1|ENST00000375766.7	+	15758418,15764495,15764963,15767375,15768527,15770408,15774617,15777169,15784547	15758848,15764685,15765233,15767563,15768630,15770578,15774796,15777287,15786594	0.941176
Peyers_patch_male_adult_37_years	chr8	97931027	97931112	97931047	+	RAMPAGE_only	8	9	42	2.524890	4.696103	chr8	97931029	97931087	LINE|RTE-BovB|MamRTE1	+	chr8	97887976	98036212	MATN2|ENST00000520016.5	+	97887976,97930952,97941776,97961407,97978885,97994479,98003660,98007104,98007478,98016539,98017993,98021204,98027415,98030461,98032245,98033041,98033560,98035656	97888242,97931522,97941899,97961530,97979008,97994602,98003783,98007227,98007601,98016662,98018116,98021327,98027829,98030614,98032317,98033176,98033659,98036212	0.976190
Peyers_patch_male_adult_37_years	chr15	53116364	53116368	53116367	+	High_confidence	15	19	28	1.683260	4.182006	chr15	53116204	53116486	LTR|ERVL-MaLR|MSTD	+	chr15	53116364	53129698	LINC02490|ENST00000559915.1	+	53116364,53118218,53129238	53116458,53118265,53129698	0.821429
Peyers_patch_male_adult_37_years	chr8	27977120	27977126	27977125	-	RAMPAGE_only	9	11	22	1.322562	3.921928	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904368	27992624	SCARA5|ENST00000524352.5	-	27904368,27907147,27909662,27921570,27966413,27987503,27992256	27904834,27907246,27909743,27922245,27966542,27987630,27992624	0.636364
Peyers_patch_male_adult_37_years	chr1	169124525	169124552	169124551	+	RAMPAGE_only	2	2	7	0.420815	2.584963	chr1	169124508	169124714	SINE|MIR|MIRb	+	chr1	169106708	169132722	ATP1B1|NM_001677.3	+	169106708,169111369,169124883,169127223,169130009,169131291	169106926,169111498,169125039,169127408,169130090,169132722	0.571429
Peyers_patch_male_adult_37_years	chr3	33864039	33864101	33864100	+	High_confidence	4	4	23	1.382678	4.277613	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33863895	33866468	PDCD6IP|ENST00000473593.1	+	33863895,33865242,33866350	33864129,33865430,33866468	0.565217
Peyers_patch_male_adult_37_years	chr7	93219110	93219170	93219169	-	High_confidence	7	9	24	1.442794	4.277613	chr7	93219071	93219143	LINE|CR1|L3	-	chr7	93188585	93219545	HEPACAM2|ENST00000440868.5	-	93188585,93192253,93195827,93197240,93197484,93208579,93215400,93219100	93189270,93192363,93195901,93197278,93197610,93208876,93215685,93219545	0.916667
Peyers_patch_male_adult_37_years	chr9	98123069	98123095	98123082	-	RAMPAGE_only	15	18	40	2.404657	4.823864	chr9	98123058	98123186	SINE|MIR|MIR3	-	chr9	98120974	98172884	CORO2A|ENST00000343933.9	-	98120974,98126548,98128169,98128606,98129793,98130954,98132184,98133037,98134805,98137571,98157459,98172626	98124905,98126823,98128260,98128719,98129890,98131059,98132301,98133217,98134955,98137688,98157660,98172884	0.975000
Peyers_patch_male_adult_37_years	chr10	72355145	72355151	72355145	-	High_confidence	6	6	14	0.841630	3.180833	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.714286
Peyers_patch_male_adult_37_years	chr12	132862333	132862334	132862333	-	High_confidence	5	5	8	0.480931	2.807355	chr12	132862311	132862594	SINE|Alu|AluJo	+	chr12	132859078	132861904	CHFR|ENST00000535897.1	-	132859078,132861466	132859227,132861904	0.625000
Peyers_patch_male_adult_37_years	chr20	1467679	1467700	1467699	-	High_confidence	30	31	62	3.727219	4.263562	chr20	1467673	1468159	LTR|ERV1|LTR10B	+	chr20	1442161	1467692	NSFL1C|ENST00000216879.8	-	1442161,1445665,1452492,1453030,1454212,1454966,1458199,1464328,1466719	1443911,1445830,1452630,1453140,1454305,1455132,1458274,1464426,1467692	0.951613
Peyers_patch_male_adult_37_years	chr2	191682483	191682506	191682483	+	RAMPAGE_only	4	4	12	0.721397	3.584963	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191686157	STRG.22975.7	+	191678989,191681945,191682491,191684229,191685598	191679128,191682017,191683804,191684296,191686157	1.000000
Peyers_patch_male_adult_37_years	chr11	67633708	67633788	67633783	-	RAMPAGE_only	47	58	189	11.362006	6.740648	chr11	67633313	67633935	LINE|L2|L2a	+	chr11	67631332	67635178	STRG.93608.4	-	67631332,67632317,67632602,67632947,67634815	67631894,67632412,67632670,67634360,67635178	0.978836
Peyers_patch_male_adult_37_years	chr9	121313949	121314021	121314020	+	RAMPAGE_only	32	32	104	6.252109	5.015915	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.990385
Peyers_patch_male_adult_37_years	chr7	123169150	123169174	123169172	-	RAMPAGE_only	5	7	12	0.721397	3.277613	chr7	123169068	123169122	SINE|MIR|MIR1_Amn	-	chr7	123115374	123181146	SLC13A1|ENST00000539873.1	-	123115374,123117470,123119080,123123125,123125568,123128844,123129382,123134409,123147158,123148405,123149443,123168373,123168503,123169147,123171767,123180972	123115655,123117608,123119242,123123235,123125675,123128946,123129481,123134529,123147310,123148573,123149620,123168422,123168561,123169335,123171904,123181146	0.583333
Peyers_patch_male_adult_37_years	chrX	151971160	151971161	151971160	-	RAMPAGE_only	11	12	13	0.781514	3.546594	chrX	151971131	151971345	LINE|L1|L1ME3A	+	chrX	151955396	151974664	STRG.151405.1	-	151955396,151955707,151959838,151961282,151962422,151969668,151970184,151971139	151955567,151959149,151960172,151961365,151962643,151969736,151970402,151974664	0.692308
Peyers_patch_male_adult_37_years	chr7	104926544	104926545	104926544	-	High_confidence	12	12	17	1.021979	3.734522	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104911915	104926630	LHFPL3-AS2|ENST00000453666.2	-	104911915,104915705,104917559,104920384,104926452	104912076,104915827,104917980,104920425,104926630	0.588235
Peyers_patch_male_adult_37_years	chr7	150323671	150323751	150323750	-	High_confidence	37	46	220	13.225616	5.899085	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	0.959091
Peyers_patch_male_adult_37_years	chr16	67571154	67571180	67571154	+	High_confidence	6	6	18	1.082096	2.984234	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.944444
Peyers_patch_male_adult_37_years	chr6	77369134	77369167	77369166	-	High_confidence	34	53	154	9.257931	5.514220	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77316649	77369158	STRG.55635.1	-	77316649,77350621,77368885	77316704,77350734,77369158	0.785714
Peyers_patch_male_adult_37_years	chr19	39892264	39892291	39892264	-	RAMPAGE_only	2	2	9	0.541048	2.947703	chr19	39892187	39892279	SINE|MIR|MIRb	+	chr19	39885729	39906315	FCGBP|ENST00000620799.1	-	39885729,39885990,39889478,39891642,39892910,39893921,39895805,39899555,39901924,39902242,39905730	39885872,39886585,39890071,39892186,39893527,39894495,39896143,39899697,39902124,39902837,39906315	1.000000
Peyers_patch_male_adult_37_years	chr1	84297935	84297943	84297935	-	High_confidence	60	63	128	7.694904	5.658536	chr1	84297928	84298031	SINE|MIR|MIRc	+	chr1	84294843	84297952	STRG.5357.1	-	84294843	84297952	0.945312
Peyers_patch_male_adult_37_years	chr19	49880212	49880213	49880212	+	RAMPAGE_only	9	9	11	0.661281	3.095795	chr19	49880157	49880245	SINE|MIR|MIR1_Amn	+	chr19	49878549	49888748	TBC1D17|ENST00000596243.5	+	49878549,49880278,49881267,49882040,49882241,49882763,49882972,49883650,49884252,49884458,49884658,49887475,49887717,49888230,49888423	49879504,49880402,49881475,49882152,49882400,49882892,49883076,49883745,49884369,49884559,49884758,49887573,49887834,49888317,49888748	0.818182
Peyers_patch_male_adult_37_years	chr9	111284874	111284875	111284874	-	High_confidence	12	12	12	0.721397	3.418296	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.833333
Peyers_patch_male_adult_37_years	chr17	74584666	74584678	74584677	+	High_confidence	13	14	23	1.382678	3.334209	chr17	74584365	74584792	LTR|ERVK|LTR3B	+	chr17	74584678	74592161	C17orf77|ENST00000524389.5	+	74584678,74590518,74591983	74584914,74590745,74592161	0.739130
Peyers_patch_male_adult_37_years	chr5	154792483	154792514	154792483	+	RAMPAGE_only	3	3	12	0.721397	3.022055	chr5	154792466	154792522	LINE|CR1|L3	-	chr5	154757173	154804208	LARP1|ENST00000524248.5	+	154757173,154790324,154790644,154792621,154793594,154793799,154794099,154795174,154799590,154799872,154802006,154803289,154803539,154804200	154757290,154790386,154790710,154792796,154793723,154794000,154794262,154795319,154799759,154800042,154802399,154803413,154803745,154804208	1.000000
Peyers_patch_male_adult_37_years	chr4	1241457	1241499	1241498	-	High_confidence	4	4	15	0.901747	3.521641	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1241463	STRG.36064.16	-	1225437,1238182,1241324	1228343,1238337,1241463	0.866667
Peyers_patch_male_adult_37_years	chr1	2551031	2551052	2551051	-	RAMPAGE_only	5	6	13	0.781514	3.238901	chr1	2550899	2551364	LINE|L1|L1ME2	-	chr1	2549919	2552106	TNFRSF14-AS1|ENST00000449660.5	-	2549919,2550572,2550991	2550274,2550731,2552106	0.615385
Peyers_patch_male_adult_37_years	chr1	101623431	101623448	101623436	+	High_confidence	12	12	42	2.524890	4.784184	chr1	101623234	101623605	LTR|ERVL-MaLR|MSTD	+	chr1	101623457	101623715	STRG.6446.1	+	101623457	101623715	0.619048
Peyers_patch_male_adult_37_years	chr7	103152895	103152915	103152898	+	RAMPAGE_only	27	29	60	3.606986	4.905333	chr7	103152807	103153195	LTR|ERV1|HERVE_a-int	+	chr7	103151783	103197501	STRG.65961.2	+	103151783,103194976	103153073,103197501	0.633333
Peyers_patch_male_adult_37_years	chr9	128788375	128788398	128788375	+	RAMPAGE_only	2	3	9	0.541048	2.725481	chr9	128788327	128788428	DNA|hAT-Ac|OldhAT1	+	chr9	128787348	128810424	TBC1D13|ENST00000223865.8	+	128787348,128788333,128790734,128791379,128791593,128792491,128797054,128805858,128806253,128807813	128787376,128788407,128790775,128791441,128791693,128792574,128797214,128806019,128806311,128810424	0.888889
Peyers_patch_male_adult_37_years	chr11	121586131	121586141	121586131	+	RAMPAGE_only	7	7	16	0.961863	3.577820	chr11	121585554	121586209	LINE|L1|L1ME4b	-	chr11	121576837	121629678	SORL1|ENST00000534286.5	+	121576837,121577280,121583457,121586221,121588019,121589258,121590039,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121577038,121577400,121583583,121586329,121588151,121589390,121590174,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121629678	0.937500
Peyers_patch_male_adult_37_years	chr11	1104440	1104441	1104440	+	RAMPAGE_only	18	18	22	1.322562	3.984184	chr11	1104388	1104491	LINE|CR1|L3	+	chr11	1074874	1110511	MUC2|ENST00000361558.7	+	1074874,1075650,1077453,1077951,1078122,1078311,1081661,1082284,1082480,1082877,1083076,1083424,1083652,1084290,1084591,1085067,1085553,1085744,1086245,1086734,1087754,1087946,1088257,1089508,1089941,1090763,1092398,1092843,1093533,1094141,1100756,1101222,1101755,1102416,1103273,1103780,1104732,1105302,1105510,1105855,1107085,1107649,1108003,1108172,1108547,1109280,1109646,1109900,1110135	1074977,1075921,1077568,1078042,1078232,1078522,1081787,1082402,1082619,1082988,1083146,1083562,1083817,1084385,1084718,1085323,1085606,1085845,1086397,1086873,1087865,1088126,1088497,1089665,1090073,1090911,1092442,1093047,1093551,1100025,1100954,1101446,1101930,1102664,1103457,1104009,1104911,1105372,1105611,1105887,1107263,1107754,1108044,1108295,1108646,1109409,1109686,1110027,1110511	0.681818
Peyers_patch_male_adult_37_years	chr7	130995537	130995538	130995537	-	RAMPAGE_only	9	9	9	0.541048	2.725481	chr7	130995260	130995508	SINE|MIR|MIR	-	chr7	130944159	131109916	LINC-PINT|NR_109851.1	-	130944159,130967388,130984052,131052424,131107719,131109736	130945835,130967517,130984109,131052555,131108803,131109916	0.555556
Peyers_patch_male_adult_37_years	chrX	147937542	147937575	147937542	+	RAMPAGE_only	6	6	18	1.082096	3.734522	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.944444
Peyers_patch_male_adult_37_years	chr11	624215	624271	624247	-	High_confidence	15	18	58	3.486753	5.223155	chr11	624236	624405	SINE|MIR|MIR1_Amn	-	chr11	617255	624932	CDHR5|ENST00000531177.5	-	617255,617953,618598,619305,619473,619680,620066,620295,621079,621344,621561,621811,624212,624556,624817	617770,618111,619180,619390,619587,619881,620164,620386,621250,621455,621663,621904,624416,624732,624932	0.879310
Peyers_patch_male_adult_37_years	chr5	133089677	133089678	133089677	+	RAMPAGE_only	18	18	19	1.142212	3.947703	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.947368
Peyers_patch_male_adult_37_years	chr12	53173808	53173839	53173817	-	High_confidence	3	3	14	0.841630	3.546594	chr12	53173811	53174022	LINE|L1|L1MB7	-	chr12	53157688	53173775	CSAD|ENST00000379843.7	-	53157688,53159621,53159886,53160119,53160762,53161272,53170071,53170422,53171272,53171881,53172345,53172521,53173344,53173727	53158423,53159712,53159938,53160319,53160844,53161389,53170126,53170502,53171441,53171988,53172436,53172648,53173476,53173775	0.857143
Peyers_patch_male_adult_37_years	chr12	101743832	101743853	101743832	+	RAMPAGE_only	3	3	9	0.541048	2.750000	chr12	101743709	101744011	SINE|Alu|AluJb	+	chr12	101726322	101744140	CHPT1|ENST00000546873.1	+	101726322,101730520,101743714	101726404,101730636,101744140	0.666667
Peyers_patch_male_adult_37_years	chr3	37988127	37988135	37988134	+	High_confidence	8	8	13	0.781514	2.931209	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.923077
Peyers_patch_male_adult_37_years	chr2	159428326	159428357	159428356	-	RAMPAGE_only	44	45	67	4.027801	5.267821	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.835821
Peyers_patch_male_adult_37_years	chr9	123179130	123179221	123179220	-	RAMPAGE_only	18	18	63	3.787335	5.178700	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.841270
Peyers_patch_male_adult_37_years	chr1	220090412	220090421	220090412	-	High_confidence	5	5	13	0.781514	2.792481	chr1	220090323	220090490	SINE|Alu|AluJr	-	chr1	220057483	220090462	BPNT1|ENST00000469520.6	-	220057483,220059685,220062756,220067301,220069383,220072849,220073966,220079726,220089685,220090286	220058992,220059791,220062954,220067393,220069432,220072957,220074071,220079854,220089951,220090462	0.846154
Peyers_patch_male_adult_37_years	chr16	29834372	29834419	29834418	+	High_confidence	6	7	25	1.502911	3.923856	chr16	29834396	29834653	SINE|Alu|AluJr	+	chr16	29834185	29840267	MVP|ENST00000570061.1	+	29834185,29835703,29836721,29840177	29834437,29835798,29836958,29840267	0.680000
Peyers_patch_male_adult_37_years	chr10	102380646	102380679	102380678	+	RAMPAGE_only	4	4	12	0.721397	3.251629	chr10	102380727	102381005	SINE|Alu|AluSx1	+	chr10	102378518	102382705	STRG.88448.6	+	102378518,102379520,102379852,102381126,102382055	102379434,102379651,102380686,102381255,102382705	1.000000
Peyers_patch_male_adult_37_years	chr10	4678146	4678177	4678146	-	High_confidence	6	6	20	1.202329	3.787144	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.600000
Peyers_patch_male_adult_37_years	chr17	16457404	16457426	16457425	-	RAMPAGE_only	6	6	15	0.901747	3.272906	chr17	16457303	16457487	LTR|ERVL|LTR33	+	chr17	16456186	16492018	STRG.126367.6	-	16456186,16462186,16491744	16462163,16462386,16492018	0.933333
Peyers_patch_male_adult_37_years	chr4	2762744	2762745	2762744	-	High_confidence	30	30	30	1.803493	3.723231	chr4	2762353	2763411	LTR|ERV1|LTR12E	-	chr4	2761713	2762727	STRG.36205.1	-	2761713	2762727	0.933333
Peyers_patch_male_adult_37_years	chr16	75513873	75513931	75513873	-	RAMPAGE_only	5	5	27	1.623144	4.254525	chr16	75513471	75513954	LINE|L2|L2a	+	chr16	75471900	75520125	STRG.124075.3	-	75471900,75481816,75490613,75494939,75504680,75505154	75479844,75481891,75490769,75502814,75504824,75520125	0.925926
Peyers_patch_male_adult_37_years	chr16	23758276	23758686	23758372	+	RAMPAGE_only	80	80	675	40.578594	5.672391	chr16	23758255	23758735	LTR|ERVL-MaLR|MLT1K	-	chr16	23754655	23758951	STRG.121608.2	+	23754655,23755846,23756062,23756387,23757200,23757529	23755733,23755927,23756193,23756449,23757323,23758951	0.998519
Peyers_patch_male_adult_37_years	chr11	64841884	64841912	64841884	-	RAMPAGE_only	3	3	9	0.541048	2.725481	chr11	64841855	64841904	SINE|MIR|MIR3	+	chr11	64823386	64844569	CDC42BPG|ENST00000342711.5	-	64823386,64826469,64826670,64827049,64827277,64827526,64827685,64829470,64830193,64831504,64832427,64832603,64832825,64833230,64833599,64833737,64833924,64834265,64834428,64834848,64835046,64835346,64835499,64835761,64836116,64836426,64836738,64836921,64838082,64838653,64839032,64839477,64840119,64840552,64841649,64841812,64844409	64824529,64826555,64826794,64827167,64827398,64827611,64827783,64830070,64830256,64831721,64832509,64832743,64832959,64833336,64833659,64833836,64833977,64834354,64834577,64834963,64835153,64835419,64835621,64835851,64836296,64836530,64836819,64837019,64838162,64838902,64839233,64839571,64840268,64840648,64841733,64841904,64844569	1.000000
Peyers_patch_male_adult_37_years	chr13	94119471	94119493	94119471	+	High_confidence	40	48	141	8.476417	5.628155	chr13	94119131	94119537	LINE|L2|L2a	-	chr13	94119589	94120423	STRG.108124.1	+	94119589	94120423	0.914894
Peyers_patch_male_adult_37_years	chr1	174874418	174874446	174874440	+	High_confidence	3	4	12	0.721397	3.251629	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.750000
Peyers_patch_male_adult_37_years	chr19	3743869	3743885	3743869	+	High_confidence	3	3	9	0.541048	2.641604	chr19	3743650	3743892	LTR|ERVL-MaLR|MLT1J	-	chr19	3743662	3747894	TJP3|ENST00000591493.1	+	3743662,3746010,3746484,3746775,3747793	3744034,3746081,3746695,3746876,3747894	0.666667
Peyers_patch_male_adult_37_years	chr19	38101155	38101168	38101165	+	RAMPAGE_only	9	9	22	1.322562	4.021928	chr19	38101212	38101377	LINE|L1|L1M5	+	chr19	37932345	38206390	STRG.136579.2	+	37932345,38029088,38081255,38088720,38099961,38101051,38106536,38110226,38119305,38130497,38131653,38142572,38152839,38162252,38164478,38182518,38192144,38193536,38198388,38201861,38204126,38206096	37932692,38029156,38083099,38088851,38100150,38101226,38106640,38110384,38119882,38130772,38141435,38142710,38152967,38162371,38164906,38182740,38192310,38193780,38198532,38201997,38204208,38206390	0.727273
Peyers_patch_male_adult_37_years	chr5	109383446	109383455	109383446	-	High_confidence	7	7	12	0.721397	3.095795	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.916667
Peyers_patch_male_adult_37_years	chr16	2669633	2669681	2669664	-	RAMPAGE_only	4	4	19	1.142212	3.503258	chr16	2669524	2670537	LTR|ERVK|LTR13	-	chr16	2666709	2671461	STRG.120365.15	-	2666709,2668547	2668497,2671461	0.789474
Peyers_patch_male_adult_37_years	chr12	51403178	51403192	51403178	+	High_confidence	10	10	19	1.142212	3.683542	chr12	51403184	51403380	LTR|Gypsy|MamGyp-int	+	chr12	51403162	51497864	SLC4A8|ENST00000604314.5	+	51403162,51440707,51450875,51452123,51453538,51457350,51458558,51459950,51461203,51462309,51463613,51469613,51470391,51471286,51474341,51475044,51485786,51488698,51489699,51493703,51494944,51496986	51403289,51440789,51451022,51452259,51453699,51457539,51458650,51460108,51461291,51462456,51463714,51469788,51470525,51471532,51474447,51475206,51485900,51488860,51489951,51493772,51495118,51497864	0.578947
Peyers_patch_male_adult_37_years	chr1	25818705	25818761	25818705	+	High_confidence	9	10	59	3.546870	5.348579	chr1	25818458	25818747	LTR|ERVL|LTR16A1	-	chr1	25818723	25832934	STRG.1654.7	+	25818723,25823018,25823643,25826301,25826614,25829508,25831920	25818852,25823323,25823748,25826411,25826826,25829830,25832934	0.694915
Peyers_patch_male_adult_37_years	chr2	218427772	218427773	218427772	+	RAMPAGE_only	9	9	12	0.721397	3.251629	chr2	218427682	218427864	DNA|hAT-Tip100|MER96	-	chr2	218423764	218431216	VIL1|ENST00000440053.1	+	218423764,218424276,218425614,218427964,218428226,218429284,218429596,218429848,218430724	218423853,218424351,218425811,218428073,218428337,218429487,218429675,218429947,218431216	0.583333
Peyers_patch_male_adult_37_years	chr17	1115379	1115409	1115399	-	High_confidence	7	8	36	2.164192	4.607018	chr17	1115307	1115433	LINE|L2|L2b	+	chr17	1072732	1115436	ABR|ENST00000570441.5	-	1072732,1073624,1079329,1083519,1091664,1100636,1115275	1072754,1073677,1079390,1083627,1091850,1100735,1115436	0.861111
Peyers_patch_male_adult_37_years	chr18	58091543	58091551	58091543	+	RAMPAGE_only	3	3	11	0.661281	3.121928	chr18	58091537	58091788	SINE|MIR|MIR	-	chr18	58047225	58401540	NEDD4L|NM_001144964.1	+	58047225,58165787,58245426,58248898,58252000,58315981,58322424,58323231,58324995,58328994,58330737,58333817,58335477,58341037,58341677,58342905,58349536,58350990,58357193,58364267,58365998,58367745,58370396,58373173,58383245,58385525,58387438,58389084,58390645,58391486,58396166	58047510,58165861,58245508,58248937,58252054,58316032,58322486,58323334,58325162,58329127,58330914,58333892,58335537,58341169,58341797,58343103,58349614,58351045,58357252,58364333,58366228,58367867,58370467,58373269,58383319,58385586,58387498,58389192,58390742,58391559,58401540	0.636364
Peyers_patch_male_adult_37_years	chr16	29821643	29821670	29821669	-	High_confidence	3	3	9	0.541048	2.750000	chr16	29821655	29821819	SINE|MIR|MIRb	+	chr16	29808928	29821220	STRG.122702.4	-	29808928,29820183,29820877	29819601,29820337,29821220	0.555556
Peyers_patch_male_adult_37_years	chr11	12249193	12249215	12249193	+	RAMPAGE_only	2	2	14	0.841630	3.182006	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.857143
Peyers_patch_male_adult_37_years	chr4	122700441	122700490	122700489	+	High_confidence	40	44	106	6.372342	4.928352	chr4	122700197	122700669	LTR|ERVL|MER70A	+	chr4	122700663	122701162	STRG.41335.1	+	122700663	122701162	0.867925
Peyers_patch_male_adult_37_years	chr16	15006394	15006398	15006395	+	RAMPAGE_only	3	4	11	0.661281	3.321928	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	14997747	15038323	PDXDC1|ENST00000450288.3	+	14997747,14998339,15006393,15008778,15009680,15016128,15017119,15017320,15018839,15022703,15026642,15028877,15029950,15031734,15032860,15033277,15034285,15034456,15035448,15036015	14997826,14998405,15006583,15008847,15009759,15016213,15017168,15017422,15018965,15022754,15026706,15028966,15030056,15031906,15032979,15033399,15034378,15034553,15035553,15038323	0.545455
Peyers_patch_male_adult_37_years	chr7	36661407	36661418	36661417	-	High_confidence	3	3	10	0.601164	2.921928	chr7	36661075	36661436	LTR|ERVL-MaLR|MLT1O	+	chr7	36623189	36661300	AOAH|ENST00000543742.1	-	36623189,36632035,36637850,36659165,36661042	36623250,36632106,36637910,36659265,36661300	1.000000
Peyers_patch_male_adult_37_years	chr3	142684037	142684150	142684037	+	RAMPAGE_only	9	9	88	5.290246	5.568931	chr3	142683987	142684094	LINE|RTE-BovB|MamRTE1	+	chr3	142656896	142713664	PLS1|NM_001172312.1	+	142656896,142664201,142669389,142670992,142676156,142678031,142684005,142684252,142686283,142689617,142694468,142697952,142703867,142704462,142711500,142711871	142657180,142664307,142669553,142671122,142676289,142678113,142684171,142684395,142686376,142689813,142694547,142698067,142704001,142704586,142711625,142713664	0.943182
Peyers_patch_male_adult_37_years	chr12	57532020	57532029	57532020	-	RAMPAGE_only	4	4	8	0.480931	2.500000	chr12	57531960	57532134	LINE|RTE-BovB|MamRTE1	+	chr12	57530616	57547120	DCTN2|ENST00000549394.5	-	57530616,57532014,57532212,57532571,57532732,57532983,57533237,57533952,57534291,57535055,57535483,57535748,57538252,57541363,57546027,57547027	57530775,57532106,57532315,57532643,57532810,57533022,57533303,57534097,57534452,57535154,57535545,57535845,57538347,57541372,57546096,57547120	0.750000
Peyers_patch_male_adult_37_years	chr4	9659001	9659002	9659001	+	RAMPAGE_only	5	5	7	0.420815	2.807355	chr4	9658973	9666434	LTR|ERVK|HERVK-int	+	chr4	9654777	9659186	STRG.36702.3	+	9654777	9659186	0.571429
Peyers_patch_male_adult_37_years	chr7	100349884	100349885	100349884	+	RAMPAGE_only	10	10	15	0.901747	3.773557	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336078	100351900	STAG3L5P|ENST00000473757.5	+	100336078,100338178,100338772,100345864,100349730,100351251	100336220,100338264,100338889,100345968,100349887,100351900	0.666667
Peyers_patch_male_adult_37_years	chr2	227164620	227164621	227164620	+	High_confidence	8	8	9	0.541048	2.750000	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.777778
Peyers_patch_male_adult_37_years	chr17	50738116	50738171	50738170	+	RAMPAGE_only	6	6	14	0.841630	3.546594	chr17	50738089	50739377	LINE|L1|HAL1	+	chr17	50719628	50751004	LUC7L3|ENST00000508482.5	+	50719628,50740305,50741101,50741656,50743705,50744651,50745719,50746541,50750500,50750723	50719831,50740345,50741246,50741731,50743810,50744813,50746003,50746702,50750641,50751004	0.500000
Peyers_patch_male_adult_37_years	chr10	103890256	103890286	103890285	-	RAMPAGE_only	4	4	8	0.480931	3.000000	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103917669	STN1|ENST00000369764.1	-	103882554,103889071,103892129,103897547,103898876,103900061,103905090,103910526,103917461	103882841,103889144,103892252,103897719,103899000,103900223,103905156,103910622,103917669	1.000000
Peyers_patch_male_adult_37_years	chr10	110884978	110885013	110884978	+	High_confidence	15	16	31	1.863610	3.699028	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110884770	110894179	PDCD4|ENST00000481353.5	+	110884770,110887664,110889532,110890555,110894090	110885366,110887886,110889630,110890670,110894179	0.903226
Peyers_patch_male_adult_37_years	chr19	49086520	49086559	49086520	+	High_confidence	78	85	237	14.247595	5.656357	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.957806
Peyers_patch_male_adult_37_years	chrX	111718134	111718152	111718151	+	High_confidence	2	2	6	0.360699	2.584963	chrX	111718150	111718232	LINE|L2|L2	-	chrX	111718218	111723881	ALG13|ENST00000490774.2	+	111718218,111720094,111721602,111723797	111718274,111720170,111721711,111723881	0.833333
Peyers_patch_male_adult_37_years	chr1	195722378	195722382	195722381	-	High_confidence	128	128	231	13.886897	5.345833	chr1	195721970	195723453	LTR|ERV1|LTR12C	-	chr1	195556999	195722365	STRG.10521.1	-	195556999,195568876,195571410,195690604,195721819	195557121,195568995,195571532,195690765,195722365	0.965368
Peyers_patch_male_adult_37_years	chr11	58578102	58578133	58578102	-	High_confidence	42	43	107	6.432459	5.782884	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.710280
Peyers_patch_male_adult_37_years	chr11	65440658	65440961	65440781	+	RAMPAGE_only	153	153	988	59.395039	6.080032	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.997976
Peyers_patch_male_adult_37_years	chr13	24925986	24926000	24925998	+	High_confidence	4	8	15	0.901747	3.521641	chr13	24925661	24926143	LTR|ERVK|LTR22A	+	chr13	24925964	24934682	STRG.105742.1	+	24925964,24933002,24933745	24926296,24933135,24934682	0.600000
Peyers_patch_male_adult_37_years	chr17	41871747	41871791	41871747	-	RAMPAGE_only	4	5	16	0.961863	3.506891	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.937500
Peyers_patch_male_adult_37_years	chr19	39168278	39168307	39168295	+	High_confidence	6	6	19	1.142212	4.058814	chr19	39168210	39168339	SINE|MIR|MIR3	-	chr19	39168610	39179406	PAK4|ENST00000360442.7	+	39168610,39169531,39172917,39173575,39174930,39175311,39176589,39177674,39178423	39168840,39169757,39173376,39174010,39175064,39175438,39176715,39177809,39179406	0.684211
Peyers_patch_male_adult_37_years	chr14	92726887	92726889	92726887	-	RAMPAGE_only	9	13	18	1.082096	3.499228	chr14	92726862	92727148	LTR|ERVL-MaLR|MLT1L	+	chr14	92703846	92748603	LGMN|ENST00000557609.5	-	92703846,92704639,92706482,92709671,92711658,92711836,92712804,92713822,92714375,92717379,92718746,92732648,92748488	92704361,92704707,92706653,92709872,92711748,92711955,92712871,92713885,92714451,92717461,92718844,92732815,92748603	0.500000
Peyers_patch_male_adult_37_years	chr6	31186328	31186355	31186328	-	High_confidence	2	3	6	0.360699	2.584963	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31167430	31186528	STRG.54021.10	-	31167430,31177638	31174270,31186528	1.000000
Peyers_patch_male_adult_37_years	chr1	17624220	17624221	17624220	+	RAMPAGE_only	12	12	12	0.721397	3.022055	chr1	17624115	17624252	SINE|MIR|MIR3	+	chr1	17618315	17697868	ARHGEF10L|ENST00000375408.7	+	17618315,17619338,17621863,17622995,17624386,17625955,17627329,17632320,17634834,17637887,17638561,17640201,17648553,17654635,17655878,17656553,17664446,17687572,17695157,17696847	17618522,17619445,17621941,17623175,17624503,17626048,17627503,17632466,17635016,17638003,17638689,17640302,17648675,17654722,17656102,17656708,17664595,17687747,17695280,17697868	0.666667
Peyers_patch_male_adult_37_years	chr12	110440313	110440315	110440313	-	RAMPAGE_only	10	13	18	1.082096	3.616875	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.888889
Peyers_patch_male_adult_37_years	chr14	103529009	103529076	103529009	-	High_confidence	7	7	39	2.344541	3.980158	chr14	103528849	103528983	SINE|Alu|AluJo	-	chr14	103525009	103529072	AL133367.1|ENST00000568177.1	-	103525009	103529072	0.897436
Peyers_patch_male_adult_37_years	chr22	37755657	37755658	37755657	+	RAMPAGE_only	8	9	12	0.721397	2.688722	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	1.000000
Peyers_patch_male_adult_37_years	chr14	21360429	21360438	21360437	-	RAMPAGE_only	4	4	9	0.541048	2.750000	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351471	21384266	SUPT16H|ENST00000216297.6	-	21351471,21353487,21353702,21354410,21357196,21357926,21358314,21359483,21360414,21360845,21361077,21362196,21362793,21363033,21363232,21363437,21364826,21365069,21366438,21368268,21369203,21369749,21370335,21371873,21373337,21383861	21352818,21353565,21353832,21354540,21357366,21358002,21358427,21359609,21360533,21360972,21361213,21362324,21362947,21363149,21363328,21363503,21364939,21365143,21366529,21368441,21369355,21369896,21370488,21372044,21373430,21384266	0.666667
Peyers_patch_male_adult_37_years	chr17	32178613	32178650	32178613	+	RAMPAGE_only	2	2	13	0.781514	3.238901	chr17	32178199	32179164	Retroposon|SVA|SVA_A	+	chr17	32176989	32181243	STRG.127410.8	+	32176989	32181243	1.000000
Peyers_patch_male_adult_37_years	chr15	82821789	82821811	82821789	+	RAMPAGE_only	2	2	8	0.480931	2.521641	chr15	82820926	82821954	LINE|L1|L1MC5a	-	chr15	82820415	82836108	STRG.119137.2	+	82820415,82823099,82826409,82826750,82830598,82833228	82821839,82823287,82826496,82826846,82831079,82836108	0.875000
Peyers_patch_male_adult_37_years	chr12	8681676	8681677	8681676	+	High_confidence	7	7	8	0.480931	2.807355	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.875000
Peyers_patch_male_adult_37_years	chr11	287872	288209	288126	+	High_confidence	58	71	398	23.926341	7.088385	chr11	287740	288214	LINE|L2|L2a	-	chr11	288085	288978	AC136475.3|ENST00000525217.1	+	288085,288618,288949	288492,288799,288978	0.927136
Peyers_patch_male_adult_37_years	chr21	39657326	39657337	39657326	+	High_confidence	13	14	40	2.404657	4.753226	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657326	39662889	B3GALT5|ENST00000380618.5	+	39657326,39659752,39660559	39657599,39659912,39662889	0.700000
Peyers_patch_male_adult_37_years	chr20	37343791	37343811	37343791	+	High_confidence	3	3	12	0.721397	3.277613	chr20	37343702	37343880	LINE|L2|L2c	-	chr20	37344684	37382787	SRC|ENST00000497734.5	+	37344684,37365203,37382618	37344887,37365277,37382787	0.500000
Peyers_patch_male_adult_37_years	chr16	1828205	1828225	1828209	+	High_confidence	5	5	13	0.781514	2.855389	chr16	1827999	1828297	SINE|Alu|AluY	+	chr16	1827223	1828907	FAHD1|NM_031208.3	+	1827223	1828907	0.692308
Peyers_patch_male_adult_37_years	chr17	36598249	36598250	36598249	+	High_confidence	4	4	6	0.360699	2.584963	chr17	36598286	36598428	SINE|MIR|MIRb	+	chr17	36598165	36600756	STRG.127591.7	+	36598165,36599971,36600161	36599763,36600037,36600756	1.000000
Peyers_patch_male_adult_37_years	chr1	184590798	184590808	184590801	+	RAMPAGE_only	7	13	25	1.502911	3.516151	chr1	184590844	184591183	DNA|TcMar-Tigger|MER2B	+	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.840000
Peyers_patch_male_adult_37_years	chr8	142344379	142344380	142344379	-	RAMPAGE_only	10	10	10	0.601164	2.846439	chr8	142344146	142344350	DNA|DNA|UCON8	-	chr8	142212166	142354763	TSNARE1|ENST00000520166.5	-	142212166,142229472,142274780,142284412,142300485,142314383,142315002,142318543,142330900,142331753,142343965,142345742,142354636	142212313,142229579,142274863,142284485,142300647,142314440,142315092,142318634,142330970,142331831,142344472,142345892,142354763	1.000000
Peyers_patch_male_adult_37_years	chr10	99902071	99902118	99902117	-	RAMPAGE_only	2	2	8	0.480931	2.521641	chr10	99901902	99902190	SINE|Alu|AluJb	-	chr10	99886403	99908198	STRG.88154.6	-	99886403,99894945,99896266,99898742	99888953,99895050,99898285,99908198	0.875000
Peyers_patch_male_adult_37_years	chr3	135965673	135965744	135965723	+	High_confidence	10	13	67	4.027801	4.836961	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.955224
Peyers_patch_male_adult_37_years	chr19	10825128	10825212	10825211	+	RAMPAGE_only	14	16	82	4.929548	5.097833	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	0.975610
Peyers_patch_male_adult_37_years	chr3	193614823	193614861	193614823	+	High_confidence	6	6	24	1.442794	3.168233	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.833333
Peyers_patch_male_adult_37_years	chr2	28541718	28541805	28541804	+	RAMPAGE_only	18	19	86	5.170013	5.369359	chr2	28541850	28542149	SINE|Alu|AluSx1	+	chr2	28548499	28596063	PLB1|ENST00000436544.1	+	28548499,28548859,28550009,28552927,28563040,28565279,28566795,28573196,28578106,28579626,28582067,28582404,28585760,28589449,28589674,28590004,28591132,28591699,28592660,28593680,28593971	28548565,28548931,28550084,28552991,28563099,28565353,28566839,28573305,28578158,28579707,28582133,28582505,28585842,28589554,28589770,28590076,28591171,28591760,28592719,28593754,28596063	0.895349
Peyers_patch_male_adult_37_years	chr1	222737262	222737296	222737289	+	High_confidence	50	51	141	8.476417	6.223037	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.695035
Peyers_patch_male_adult_37_years	chr17	39358046	39358060	39358054	-	RAMPAGE_only	6	7	18	1.082096	3.836592	chr17	39357938	39358039	LTR|ERVL|MLT2B2	-	chr17	39260586	39401623	FBXL20|ENST00000394294.7	-	39260586,39264174,39265396,39268826,39270795,39274969,39281388,39282728,39297126,39298989,39301000,39303584,39343179,39401360	39261567,39264387,39265453,39268871,39270856,39275100,39281463,39282855,39297195,39299084,39301075,39303639,39343241,39401623	0.555556
Peyers_patch_male_adult_37_years	chr16	15798664	15798670	15798664	-	RAMPAGE_only	25	26	46	2.765356	4.925119	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.891304
Peyers_patch_male_adult_37_years	chr17	61955400	61955418	61955400	-	RAMPAGE_only	2	2	8	0.480931	2.500000	chr17	61954857	61955361	LTR|ERVL-MaLR|MLT1D	-	chr17	61942604	62030000	STRG.129748.2	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61987006,61992539,61995151,62010549,62029540,62029850	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61985090,61987128,61992621,61995365,62011233,62029651,62030000	1.000000
Peyers_patch_male_adult_37_years	chr14	101731413	101731433	101731432	+	High_confidence	8	11	26	1.563027	4.243856	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.846154
Peyers_patch_male_adult_37_years	chr7	99660078	99660162	99660161	-	High_confidence	25	27	121	7.274089	3.991063	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648199	99660602	STRG.65823.23	-	99648199,99650072,99652552	99648400,99650232,99660602	1.000000
Peyers_patch_male_adult_37_years	chr11	1092706	1093001	1092854	+	RAMPAGE_only	58	58	442	26.571465	6.995995	chr11	1092816	1092887	DNA|hAT-Ac|OldhAT1	-	chr11	1087033	1103456	STRG.90138.8	+	1087033,1087395,1087946,1088257,1089508,1089941,1090763,1092398,1092843,1093533,1096839,1100756,1101222,1101755,1102416,1103273	1087123,1087865,1088126,1088497,1089665,1090073,1090911,1092442,1093047,1096662,1100025,1100954,1101446,1101930,1102664,1103456	0.875566
Peyers_patch_male_adult_37_years	chr9	39810023	39810034	39810023	-	High_confidence	8	8	16	0.961863	3.577820	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803678	39810037	STRG.78063.2	-	39803678,39809485	39803859,39810037	0.687500
Peyers_patch_male_adult_37_years	chr9	76609052	76609132	76609131	+	RAMPAGE_only	17	17	104	6.252109	5.520103	chr9	76609168	76609773	DNA|TcMar-Tigger|Tigger17a	+	chr9	76606279	76658618	STRG.78917.4	+	76606279,76609248,76642193,76644717,76649952,76657994	76609153,76609342,76642678,76644979,76657949,76658618	0.663462
Peyers_patch_male_adult_37_years	chr21	46225846	46225850	46225849	-	RAMPAGE_only	7	8	14	0.841630	3.238901	chr21	46225020	46226027	LTR|ERVK|LTR13	+	chr21	46189124	46228762	STRG.143589.5	-	46189124,46191880,46194490,46195675,46196201,46205835,46206671,46207427,46208250,46209553,46210687,46213024,46213737,46215179,46215684,46216388,46219475,46221853,46222629,46228433,46228731	46191235,46191959,46194661,46195756,46196267,46205941,46206768,46207577,46208301,46209625,46210744,46213052,46213835,46215298,46215793,46216524,46219572,46221975,46227690,46228599,46228762	0.928571
Peyers_patch_male_adult_37_years	chr6	24653454	24653475	24653454	-	RAMPAGE_only	3	3	9	0.541048	2.500000	chr6	24653362	24653609	LINE|L2|L2c	+	chr6	24649978	24666591	TDP2|ENST00000341060.3	-	24649978,24652982,24654411,24657811,24658560,24666118	24651069,24653153,24654530,24657903,24658734,24666591	0.555556
Peyers_patch_male_adult_37_years	chr6	11728374	11728547	11728546	-	High_confidence	18	18	92	5.530712	5.738804	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.521739
Peyers_patch_male_adult_37_years	chr6	12261097	12261139	12261097	+	High_confidence	6	6	34	2.043959	3.934419	chr6	12260893	12261158	LINE|L1|L1M5	+	chr6	12261070	12262059	STRG.52883.1	+	12261070	12262059	0.941176
Peyers_patch_male_adult_37_years	chr11	62600174	62600196	62600195	-	High_confidence	4	4	9	0.541048	2.500000	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.555556
Peyers_patch_male_adult_37_years	chr1	54615035	54615052	54615051	+	RAMPAGE_only	3	5	8	0.480931	3.000000	chr1	54615015	54615151	LINE|CR1|L3	+	chr1	54548227	54639192	ACOT11|ENST00000371316.3	+	54548227,54584654,54585834,54592545,54593940,54594555,54597258,54599295,54601268,54602668,54603870,54604345,54605075,54607133,54607941,54630733,54634687	54548342,54584862,54585904,54592606,54594039,54594691,54597415,54599415,54601413,54602724,54603937,54604429,54605209,54607265,54608068,54630886,54639192	0.625000
Peyers_patch_male_adult_37_years	chr9	98807074	98807108	98807074	-	High_confidence	6	7	20	1.202329	3.746439	chr9	98806836	98807126	SINE|Alu|AluJr4	-	chr9	98798465	98807564	AL807776.1|ENST00000647710.1	-	98798465,98806770	98799609,98807564	0.850000
Peyers_patch_male_adult_37_years	chr17	39494625	39494626	39494625	+	RAMPAGE_only	6	6	9	0.541048	2.500000	chr17	39494618	39494687	DNA|Merlin|Merlin1_HS	-	chr17	39462038	39535146	CDK12|ENST00000447079.4	+	39462038,39470878,39490556,39492750,39494523,39501249,39509704,39511528,39515730,39517439,39519955,39524673,39525863,39530603	39463117,39471763,39490733,39492890,39494694,39501439,39509761,39511630,39515808,39517556,39520087,39524885,39526316,39535146	0.888889
Peyers_patch_male_adult_37_years	chr2	86482561	86482578	86482577	+	RAMPAGE_only	41	42	60	3.606986	4.914794	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86469686	86492712	STRG.17891.5	+	86469686,86474775,86477876,86478169,86478607,86481929,86482457,86483986,86484941,86485728,86489317,86489519,86490880,86492038	86470408,86474990,86478029,86478265,86480362,86482102,86482694,86484158,86485029,86485859,86489437,86489659,86491275,86492712	0.916667
Peyers_patch_male_adult_37_years	chrX	44225788	44225808	44225788	-	High_confidence	2	2	8	0.480931	2.521641	chrX	44225702	44225811	SINE|MIR|MIR3	-	chrX	44147881	44225756	EFHC2|ENST00000343571.3	-	44147881,44163921,44176291,44178366,44225684	44148896,44164027,44176384,44178564,44225756	0.750000
Peyers_patch_male_adult_37_years	chr9	113508363	113508364	113508363	+	RAMPAGE_only	7	7	9	0.541048	2.947703	chr9	113508286	113508373	LINE|CR1|L3	+	chr9	113505261	113542091	RGS3|ENST00000374136.5	+	113505261,113506387,113507286,113508540,113514457,113517540,113522929,113529220,113536795,113541319	113505523,113506493,113507638,113508580,113514654,113517624,113523041,113529264,113536918,113542091	0.555556
Peyers_patch_male_adult_37_years	chr3	185959724	185959748	185959747	+	High_confidence	36	53	103	6.191993	5.322242	chr3	185959492	185959826	SINE|Alu|AluSq2	+	chr3	185959961	185975198	NMRAL2P|ENST00000422108.5	+	185959961,185968478,185971614,185975165	185960078,185968649,185971864,185975198	0.582524
Peyers_patch_male_adult_37_years	chr3	195616444	195616475	195616447	+	High_confidence	43	45	133	7.995486	5.114188	chr3	195616326	195616452	SINE|MIR|MIRc	-	chr3	195616314	195723900	STRG.35792.82	+	195616314,195723052	195617001,195723900	0.969925
Peyers_patch_male_adult_37_years	chr5	82279590	82279591	82279590	+	High_confidence	4	4	7	0.420815	2.521641	chr5	82279305	82279599	LINE|L2|L2a	-	chr5	82279461	82318803	ATP6AP1L|ENST00000380167.8	+	82279461,82280959,82295492,82303486,82303773,82304614,82304933,82310156,82312610,82317997	82279878,82281011,82295544,82303527,82303832,82304850,82305481,82310207,82312851,82318803	0.857143
Peyers_patch_male_adult_37_years	chr19	41545191	41545192	41545191	+	RAMPAGE_only	8	8	8	0.480931	3.000000	chr19	41544577	41545607	LTR|ERVK|LTR5A	+	chr19	41549517	41586844	CEACAM21|NM_001288773.2	+	41549517,41564681,41577199,41579269,41584346,41585442,41585839,41586463	41549552,41565056,41577559,41579628,41584443,41585495,41585871,41586844	0.500000
Peyers_patch_male_adult_37_years	chr1	2551249	2551258	2551257	-	High_confidence	14	14	22	1.322562	4.392317	chr1	2550899	2551364	LINE|L1|L1ME2	-	chr1	2550073	2551598	TNFRSF14-AS1|ENST00000448624.2	-	2550073,2550991	2550274,2551598	0.727273
Peyers_patch_male_adult_37_years	chr1	30039409	30039440	30039409	-	High_confidence	2	2	11	0.661281	2.913977	chr1	30039248	30039696	LTR|ERVK|LTR22A	-	chr1	30024963	30039375	STRG.1930.1	-	30024963,30029289,30039174	30025183,30029490,30039375	0.909091
Peyers_patch_male_adult_37_years	chr11	77175302	77175303	77175302	+	High_confidence	6	6	9	0.541048	2.725481	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
Peyers_patch_male_adult_37_years	chr10	121974546	121974573	121974556	-	High_confidence	3	3	14	0.841630	3.026987	chr10	121974357	121974506	DNA|hAT-Charlie|MER5A	-	chr10	121967377	121974788	NSMCE4A|ENST00000481320.5	-	121967377,121970938,121974003	121967806,121971069,121974788	0.857143
Peyers_patch_male_adult_37_years	chr9	111597615	111597666	111597615	-	High_confidence	9	9	18	1.082096	3.101881	chr9	111597560	111597709	SINE|MIR|MIR	-	chr9	111562972	111597432	PTGR1|ENST00000374324.5	-	111562972,111570090,111574733,111578795,111583471,111585997,111589263,111592925,111594221,111597316	111564262,111570209,111574842,111578951,111583589,111586165,111589382,111592982,111594267,111597432	0.777778
Peyers_patch_male_adult_37_years	chr6	25780246	25780597	25780327	+	RAMPAGE_only	11	11	151	9.077582	6.191333	chr6	25780224	25780608	LINE|L2|L2c	-	chr6	25754749	25782748	STRG.53457.3	+	25754749,25761926,25768984,25776594,25779053	25754781,25762053,25773674,25778016,25782748	0.993377
Peyers_patch_male_adult_37_years	chr14	81170402	81170420	81170419	-	High_confidence	3	3	13	0.781514	3.022055	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.923077
Peyers_patch_male_adult_37_years	chr1	89272819	89272883	89272819	-	High_confidence	2	2	16	0.961863	3.750000	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89262697	89272804	GBP5|ENST00000443807.1	-	89262697,89263735,89264685,89266345,89266956,89267416,89268728,89269365	89262785,89263948,89264966,89266588,89267153,89267526,89268856,89272804	1.000000
Peyers_patch_male_adult_37_years	chr1	155954904	155954905	155954904	-	RAMPAGE_only	10	11	11	0.661281	2.646439	chr1	155954717	155954897	LINE|L1|L1ME4b	-	chr1	155947366	155952721	ARHGEF2|ENST00000368315.8	-	155947366,155950298,155950828,155950873,155951482,155951740,155951918,155952115,155952627	155948015,155950482,155950872,155951272,155951533,155951776,155951986,155952235,155952721	0.909091
Peyers_patch_male_adult_37_years	chr3	195688695	195688725	195688724	+	High_confidence	6	7	18	1.082096	3.836592	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688755	195708806	MUC20-OT1|ENST00000628547.2	+	195688755,195689338,195696360,195699029,195708133,195708746	195688797,195689438,195696589,195699178,195708435,195708806	0.888889
Peyers_patch_male_adult_37_years	chr12	6356342	6356374	6356373	-	High_confidence	11	11	26	1.563027	4.163856	chr12	6356219	6356436	LINE|L2|L2b	+	chr12	6355391	6356293	SCNN1A|ENST00000536087.1	-	6355391,6355776	6355435,6356293	0.961538
Peyers_patch_male_adult_37_years	chr2	237584399	237584419	237584399	-	RAMPAGE_only	4	4	9	0.541048	2.725481	chr2	237584394	237584487	DNA|hAT-Charlie|MER58B	-	chr2	237574737	237590715	STRG.24967.8	-	237574737,237575386,237578003,237579272,237590466	237575128,237577382,237578155,237586157,237590715	0.777778
Peyers_patch_male_adult_37_years	chr20	9333510	9333535	9333510	+	High_confidence	2	2	10	0.601164	2.641604	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9333292	9367178	STRG.139202.3	+	9333292,9337125,9338007,9338893,9362895,9365460	9333570,9337206,9338067,9339037,9362975,9367178	0.900000
Peyers_patch_male_adult_37_years	chr16	75526006	75526018	75526006	-	RAMPAGE_only	3	3	10	0.601164	2.646439	chr16	75525970	75526027	LTR|ERVL-MaLR|MSTD	-	chr16	75471900	75535247	STRG.124075.1	-	75471900,75481816,75490613,75494939,75505154,75533088,75535126	75479844,75481891,75490769,75504824,75531640,75533183,75535247	1.000000
Peyers_patch_male_adult_37_years	chr11	72758541	72758553	72758552	-	High_confidence	8	13	21	1.262445	3.105672	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72759309	STARD10|ENST00000537351.5	-	72754728,72755121,72755700,72757766,72758529,72759233	72754782,72755142,72755753,72757884,72758633,72759309	0.666667
Peyers_patch_male_adult_37_years	chr11	65382794	65382835	65382834	-	High_confidence	3	5	11	0.661281	3.459432	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375191	65382674	SLC25A45|NM_182556.3	-	65375191,65376817,65379375,65379866,65380131,65381914,65382485	65376675,65377076,65379561,65379938,65380175,65381969,65382674	0.545455
Peyers_patch_male_adult_37_years	chr11	68773414	68773415	68773414	-	RAMPAGE_only	6	6	6	0.360699	2.584963	chr11	68773373	68773449	LINE|CR1|L3	+	chr11	68754619	68815503	CPT1A|ENST00000540367.5	-	68754619,68759568,68760224,68761534,68762626,68773264,68775315,68780639,68781770,68784814,68793314,68794803,68796855,68799217,68803999,68807466,68812436,68815333	68754851,68759661,68760338,68761687,68762761,68773429,68775432,68780745,68781959,68785010,68793402,68794911,68796933,68799355,68804101,68807638,68812576,68815503	0.666667
Peyers_patch_male_adult_37_years	chr1	176162936	176162964	176162936	-	RAMPAGE_only	11	11	23	1.382678	4.297079	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	176116645	176206440	COP1|ENST00000491600.5	-	176116645,176135009,176136487,176149005,176162868,176163814,176168664,176175909,176184632,176206348	176116681,176135086,176136547,176149074,176162988,176163891,176168748,176176007,176184692,176206440	0.695652
Peyers_patch_male_adult_37_years	chr8	144853481	144853556	144853539	-	High_confidence	4	4	19	1.142212	4.037401	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	0.842105
Peyers_patch_male_adult_37_years	chr19	33395185	33395214	33395185	-	High_confidence	4	4	15	0.901747	3.039149	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	0.533333
Peyers_patch_male_adult_37_years	chr21	39642381	39642396	39642381	+	High_confidence	165	167	499	29.998102	7.457063	chr21	39642371	39642477	LINE|L2|L2b	-	chr21	39642365	39662888	STRG.143230.2	+	39642365,39646391,39659752,39660559	39646261,39657599,39659912,39662888	0.951904
Peyers_patch_male_adult_37_years	chr11	129846844	129846845	129846844	+	RAMPAGE_only	7	7	10	0.601164	2.725481	chr11	129846522	129847076	LINE|L2|L2a	-	chr11	129845280	129859215	STRG.97373.9	+	129845280,129854609,129857312,129858573	129852660,129855892,129857458,129859215	0.800000
Peyers_patch_male_adult_37_years	chr6	111284166	111284202	111284166	+	RAMPAGE_only	4	4	10	0.601164	3.169925	chr6	111282960	111284170	LTR|ERVL-MaLR|THE1B-int	-	chr6	111262589	111288473	STRG.57540.4	+	111262589,111263829,111265875	111263205,111263946,111288473	0.600000
Peyers_patch_male_adult_37_years	chr19	50286245	50286274	50286245	+	RAMPAGE_only	7	7	15	0.901747	3.456565	chr19	50286245	50286337	LINE|L1|L1MEf	-	chr19	50284763	50310539	MYH14|ENST00000595016.1	+	50284763,50289435,50290886,50292260,50293232,50293563,50301660,50307048,50309004,50309639	50286694,50289648,50291048,50292389,50293321,50293687,50301869,50307157,50309177,50310539	1.000000
Peyers_patch_male_adult_37_years	chr7	99657152	99657702	99657334	-	RAMPAGE_only	52	53	487	29.276704	7.146283	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648199	99660602	STRG.65823.23	-	99648199,99650072,99652552	99648400,99650232,99660602	1.000000
Peyers_patch_male_adult_37_years	chr19	40751802	40751834	40751802	-	High_confidence	147	156	343	20.619938	5.633031	chr19	40751529	40751903	LINE|L2|L2b	+	chr19	40740861	40751825	STRG.136785.3	-	40740861,40741693,40743904,40744558,40745129,40749480	40741439,40742770,40743981,40744683,40745198,40751825	0.982507
Peyers_patch_male_adult_37_years	chr3	142160202	142160223	142160222	-	RAMPAGE_only	4	4	13	0.781514	2.931209	chr3	142160148	142160283	SINE|Alu|FLAM_C	-	chr3	142157526	142225607	GK5|NM_001039547.2	-	142157526,142170324,142171418,142172352,142177481,142181460,142182922,142185928,142186193,142186451,142187703,142198801,142204694,142213525,142215598,142225308	142165770,142170458,142171478,142172456,142177576,142181565,142183049,142185989,142186267,142186513,142187779,142198933,142204788,142213601,142215692,142225607	0.923077
Peyers_patch_male_adult_37_years	chr6	42403635	42403668	42403635	-	RAMPAGE_only	3	3	12	0.721397	3.251629	chr6	42403232	42403669	LTR|ERVL-MaLR|MLT1C	+	chr6	42228125	42451261	TRERF1|ENST00000372917.8	-	42228125,42232680,42236204,42243247,42246455,42254850,42256727,42256962,42258134,42259338,42264703,42265750,42268153,42269498,42300637,42362946,42451176	42228669,42232892,42236411,42243361,42246544,42254926,42256831,42257102,42258201,42259723,42264854,42265797,42269251,42269848,42300749,42363079,42451261	0.750000
Peyers_patch_male_adult_37_years	chr10	105644347	105644377	105644347	+	High_confidence	12	13	26	1.563027	4.403856	chr10	105644158	105644712	LTR|ERVL|MLT2B3	+	chr10	105644310	105682202	STRG.88749.1	+	105644310,105663803,105677192	105644626,105663936,105682202	0.730769
Peyers_patch_male_adult_37_years	chr9	89479889	89479890	89479889	-	High_confidence	28	28	30	1.803493	3.792842	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89402924	89479890	SEMA4D|ENST00000540475.5	-	89402924,89405350,89455887,89479571	89403016,89405699,89455953,89479890	0.933333
Peyers_patch_male_adult_37_years	chr6	31534335	31534371	31534335	-	RAMPAGE_only	2	2	15	0.901747	3.456565	chr6	31534005	31534297	SINE|Alu|AluJb	-	chr6	31532412	31542001	DDX39B|ENST00000481456.1	-	31532412,31536499,31538762,31539146,31540321	31535485,31536683,31538855,31539274,31542001	1.000000
Peyers_patch_male_adult_37_years	chr13	26972094	26972153	26972094	+	High_confidence	8	8	17	1.021979	3.750000	chr13	26972052	26972335	LINE|L2|L2c	-	chr13	26972230	26972779	STRG.105810.1	+	26972230	26972779	0.647059
Peyers_patch_male_adult_37_years	chr10	46554691	46554705	46554691	-	High_confidence	5	5	9	0.541048	2.500000	chr10	46554368	46554805	LTR|LTR|MamRep1527	+	chr10	46549043	46555530	GPRIN2|ENST00000374317.1	-	46549043,46554584,46555374	46550742,46554695,46555530	0.666667
Peyers_patch_male_adult_37_years	chr10	30999519	30999520	30999519	-	High_confidence	5	5	7	0.420815	2.521641	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.714286
Peyers_patch_male_adult_37_years	chr16	27355361	27355380	27355379	+	High_confidence	6	6	12	0.721397	3.084963	chr16	27355336	27355503	SINE|MIR|MIR	-	chr16	27355347	27362296	IL4R|ENST00000563886.1	+	27355347,27358915,27360765,27362251	27355907,27358994,27360815,27362296	1.000000
Peyers_patch_male_adult_37_years	chr1	220140287	220140288	220140287	+	High_confidence	4	5	7	0.420815	2.807355	chr1	220140323	220140598	SINE|Alu|AluSz6	+	chr1	220140180	220143344	IARS2|ENST00000467924.1	+	220140180,220141802,220142943	220140289,220141948,220143344	0.571429
Peyers_patch_male_adult_37_years	chr12	118139096	118139097	118139096	+	High_confidence	17	17	17	1.021979	3.734522	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	1.000000
Peyers_patch_male_adult_37_years	chr11	57303085	57303105	57303104	-	High_confidence	4	4	8	0.480931	2.500000	chr11	57303078	57303173	SINE|MIR|MIRb	+	chr11	57299675	57303479	TNKS1BP1|ENST00000427750.2	-	57299675,57300527,57300883,57301806,57302073,57302458	57300081,57300600,57301041,57301943,57302224,57303479	0.875000
Peyers_patch_male_adult_37_years	chr9	7103839	7103864	7103839	+	High_confidence	5	7	13	0.781514	3.392747	chr9	7103879	7104109	LINE|L2|L2b	+	chr9	7104267	7170212	KDM4C|ENST00000490806.5	+	7104267,7128065,7165237,7169797	7104354,7128236,7165357,7170212	0.769231
Peyers_patch_male_adult_37_years	chr19	38710837	38710870	38710837	+	High_confidence	4	4	13	0.781514	3.418296	chr19	38710506	38711017	LINE|L2|L2b	-	chr19	38710832	38717117	ACTN4|ENST00000489451.1	+	38710832,38714468,38717085	38711361,38714561,38717117	0.846154
Peyers_patch_male_adult_37_years	chr10	122576712	122576715	122576712	+	RAMPAGE_only	19	19	33	1.983842	4.245469	chr10	122576744	122576876	SINE|Alu|FLAM_C	+	chr10	122560764	122643729	STRG.89528.8	+	122560764,122565966,122570161,122570889,122572313,122573714,122576398,122577810,122578717,122579577,122580865,122581792,122582599,122597024,122597973,122598773,122600063,122600990,122601796,122603099,122605049,122605855,122607158,122609108,122609914,122611217,122613167,122613973,122615276,122617227,122618016,122619307,122620252,122621056,122625276,122625932,122629839,122630287,122630960,122631854,122632860,122633190,122635990,122637127,122640039,122643121	122560831,122565996,122570209,122570937,122572361,122573762,122576722,122577840,122578759,122579901,122580895,122581825,122582923,122597054,122598012,122599097,122600093,122601023,122602120,122603129,122605082,122606179,122607188,122609141,122610238,122611247,122613200,122614297,122615306,122617260,122618340,122619337,122620291,122621380,122625303,122625965,122629993,122630490,122631281,122631875,122632890,122633341,122636199,122637312,122640449,122643729	1.000000
Peyers_patch_male_adult_37_years	chr3	33838256	33838257	33838256	+	RAMPAGE_only	10	12	15	0.901747	3.664498	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.733333
Peyers_patch_male_adult_37_years	chr7	107580245	107580267	107580245	+	High_confidence	37	39	181	10.881075	6.268899	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.839779
Peyers_patch_male_adult_37_years	chr7	99658394	99658984	99658983	-	RAMPAGE_only	80	80	1131	67.991689	7.375684	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648199	99660602	STRG.65823.23	-	99648199,99650072,99652552	99648400,99650232,99660602	1.000000
Peyers_patch_male_adult_37_years	chr16	8842153	8842154	8842153	+	High_confidence	8	8	10	0.601164	2.846439	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.900000
Peyers_patch_male_adult_37_years	chr9	76642246	76642247	76642246	+	RAMPAGE_only	8	8	11	0.661281	2.921928	chr9	76642243	76642342	SINE|MIR|MIR	-	chr9	76640584	76645438	STRG.78917.10	+	76640584	76645438	0.909091
Peyers_patch_male_adult_37_years	chr17	46163030	46163045	46163030	-	RAMPAGE_only	3	3	10	0.601164	2.921928	chr17	46162487	46163270	LINE|L2|L2b	+	chr17	46032256	46172183	KANSL1|ENST00000639531.1	-	46032256,46033079,46033402,46034160,46038537,46039701,46050532,46066536,46067548,46082440,46094559,46170854	46032299,46033192,46033460,46034285,46038686,46039884,46050704,46066732,46067667,46082542,46094701,46172183	0.500000
Peyers_patch_male_adult_37_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	39	41	41	2.464774	4.006574	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.951220
Peyers_patch_male_adult_37_years	chr4	56216116	56216142	56216141	+	High_confidence	80	80	176	10.580493	6.145090	chr4	56216025	56216165	SINE|MIR|MIR3	+	chr4	56216101	56328625	KIAA1211|ENST00000504228.6	+	56216101,56272320,56298213,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56216273,56272492,56298349,56307699,56310734,56313379,56316689,56323567,56324266,56328625	0.704545
Peyers_patch_male_adult_37_years	chr6	87213705	87213743	87213731	+	High_confidence	19	21	131	7.875253	6.099983	chr6	87213283	87213856	LTR|ERV1|LTR10A	-	chr6	87213737	87222636	STRG.56181.5	+	87213737,87215902,87216298,87218595	87214069,87216057,87216377,87222636	0.908397
Peyers_patch_male_adult_37_years	chr15	63050030	63050055	63050054	+	RAMPAGE_only	8	8	16	0.961863	3.589898	chr15	63049931	63050150	SINE|MIR|MIR	+	chr15	63048812	63062277	TPM1|ENST00000560615.5	+	63048812,63056984,63059562,63060868,63061197,63062214	63048920,63057118,63059680,63060939,63061273,63062277	0.875000
Peyers_patch_male_adult_37_years	chr1	52913998	52914057	52914056	-	RAMPAGE_only	5	5	21	1.262445	4.142664	chr1	52913984	52914299	LINE|L2|L2b	-	chr1	52913719	52921721	ECHDC2|ENST00000474789.1	-	52913719,52921552	52914095,52921721	0.571429
Peyers_patch_male_adult_37_years	chr12	72432463	72432484	72432481	+	High_confidence	38	88	169	10.159678	5.787312	chr12	72432166	72432618	LTR|ERVK|LTR22A	-	chr12	72432488	72652468	STRG.102605.1	+	72432488,72469757,72473066,72499497,72542290,72562164,72562852,72568567,72575254,72575486,72618890,72621107,72621643,72652321	72432566,72469912,72473180,72499635,72542356,72562230,72563040,72568656,72575388,72575542,72619038,72621205,72621751,72652468	0.775148
Peyers_patch_male_adult_37_years	chr21	41426073	41426090	41426089	+	High_confidence	3	4	14	0.841630	3.521641	chr21	41426026	41426113	DNA|hAT-Charlie|MER5A	-	chr21	41426030	41459214	MX1|NM_002462.4	+	41426030,41427205,41427754,41430532,41432049,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41426263,41427304,41427866,41430608,41432175,41436029,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	1.000000
Peyers_patch_male_adult_37_years	chr15	80059915	80059933	80059918	+	High_confidence	22	26	53	3.186171	4.410376	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.924528
Peyers_patch_male_adult_37_years	chr15	75347012	75347043	75347037	+	High_confidence	10	11	58	3.486753	5.082804	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.517241
Peyers_patch_male_adult_37_years	chr22	32111433	32111844	32111433	+	RAMPAGE_only	74	80	1590	95.585133	7.087506	chr22	32111132	32111510	LTR|ERVL-MaLR|MLT1B	-	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	0.998742
Peyers_patch_male_adult_37_years	chr9	73080369	73080370	73080369	-	High_confidence	6	6	6	0.360699	2.584963	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	1.000000
Peyers_patch_male_adult_37_years	chr7	6469601	6469606	6469605	-	High_confidence	3	4	8	0.480931	2.521641	chr7	6469259	6469573	SINE|Alu|AluSx3	-	chr7	6461761	6470406	KDELR2|ENST00000454368.2	-	6461761,6466070,6469595	6463175,6466323,6470406	0.875000
Peyers_patch_male_adult_37_years	chr17	4143199	4143200	4143199	+	High_confidence	26	27	35	2.104075	4.377727	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.914286
Peyers_patch_male_adult_37_years	chr3	119811124	119811160	119811124	+	High_confidence	10	10	43	2.585007	4.927799	chr3	119811045	119811296	SINE|MIR|MIRb	-	chr3	119811075	119818484	NR1I2|ENST00000493757.1	+	119811075,119812685,119814978,119815322,119815725,119817067	119811726,119812960,119815121,119815439,119815831,119818484	0.837209
Peyers_patch_male_adult_37_years	chr2	104890240	104890248	104890247	+	High_confidence	3	4	8	0.480931	2.521641	chr2	104890102	104890400	LTR|ERV1|MER61B	+	chr2	104890444	104891217	STRG.18779.1	+	104890444	104891217	0.500000
Peyers_patch_male_adult_37_years	chrX	66258627	66258634	66258633	+	RAMPAGE_only	4	5	11	0.661281	3.095795	chrX	66258313	66258772	LINE|L2|L2c	-	chrX	66254713	66267383	STRG.148813.6	+	66254713,66256104,66260099,66263643,66266439	66255141,66258979,66260262,66263688,66267383	1.000000
Peyers_patch_male_adult_37_years	chr15	80059784	80059788	80059784	+	High_confidence	2	2	7	0.420815	2.521641	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059713	80138360	ZFAND6|ENST00000558494.5	+	80059713,80120327,80121711,80122699,80131179,80137479	80059809,80120498,80121820,80122800,80131293,80138360	0.857143
Peyers_patch_male_adult_37_years	chr19	51350348	51350373	51350368	-	RAMPAGE_only	5	7	26	1.563027	3.684561	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.769231
Peyers_patch_male_adult_37_years	chr16	75525254	75525293	75525292	-	RAMPAGE_only	6	6	28	1.683260	4.423252	chr16	75525230	75525376	LTR|ERV1|MER34A	+	chr16	75471900	75535247	STRG.124075.1	-	75471900,75481816,75490613,75494939,75505154,75533088,75535126	75479844,75481891,75490769,75504824,75531640,75533183,75535247	1.000000
Peyers_patch_male_adult_37_years	chr3	32077626	32077688	32077626	-	High_confidence	5	5	20	1.202329	3.576618	chr3	32077310	32077987	LTR|ERV1|MER50B	+	chr3	31876432	32077580	OSBPL10|ENST00000479173.1	-	31876432,31879654,32046490,32077395	31876512,31879830,32046603,32077580	0.900000
Peyers_patch_male_adult_37_years	chr2	30754587	30754650	30754587	-	RAMPAGE_only	2	2	16	0.961863	3.640224	chr2	30754509	30755430	LINE|L2|L2b	+	chr2	30741373	30807426	CAPN13|ENST00000458085.6	-	30741373,30742325,30743382,30745722,30751102,30753052,30754289,30758045,30763081,30764131,30770312,30775929,30777566,30787127,30806180,30807301	30741964,30742359,30743535,30745734,30751251,30753198,30754364,30758137,30763156,30764306,30770449,30776045,30777639,30787357,30806266,30807426	0.750000
Peyers_patch_male_adult_37_years	chr3	195689406	195689460	195689406	+	High_confidence	8	8	16	0.961863	3.625000	chr3	195689376	195689522	LINE|L1|L1MC5a	+	chr3	195689424	195696554	MUC20-OT1|ENST00000626677.1	+	195689424,195696360	195689608,195696554	0.562500
Peyers_patch_male_adult_37_years	chr6	158303280	158303327	158303326	-	High_confidence	5	5	26	1.563027	4.180833	chr6	158303244	158303618	LTR|ERVK|MER11A	-	chr6	158296463	158303364	STRG.60113.2	-	158296463	158303364	1.000000
Peyers_patch_male_adult_37_years	chr11	64900884	64900892	64900884	-	RAMPAGE_only	2	2	8	0.480931	2.500000	chr11	64900759	64900881	SINE|MIR|MIRc	-	chr11	64894545	64913395	ATG2A|ENST00000418259.5	-	64894545,64895289,64896461,64896747,64897411,64897670,64897838,64898085,64898260,64898635,64900493,64900883,64901961,64902259,64902509,64903287,64903589,64905562,64905741,64906112,64906333,64906664,64907254,64907524,64907747,64908990,64909270,64909680,64910039,64910615,64910806,64911037,64911841,64912084,64912326,64913037,64913265	64895209,64895442,64896616,64896869,64897494,64897743,64897974,64898170,64898362,64898842,64900629,64901092,64902176,64902386,64902680,64903364,64903660,64905655,64905848,64906193,64906533,64906815,64907439,64907664,64907890,64909150,64909367,64909924,64910195,64910708,64910954,64911275,64911982,64912249,64912423,64913136,64913395	1.000000
Peyers_patch_male_adult_37_years	chr3	171177543	171177581	171177543	-	High_confidence	3	3	16	0.961863	3.506891	chr3	171177478	171177606	LINE|L2|L2c	+	chr3	171063329	171177580	STRG.34649.9	-	171063329,171066575,171068847,171071222,171079517,171082250,171084154,171085117,171087341,171093838,171101448,171110713,171123595,171125911,171128713,171138190,171140398,171157459,171161269,171167094,171175251,171177325,171177513	171066326,171066735,171068997,171071323,171079652,171082394,171084325,171085229,171087506,171093968,171101633,171110877,171123702,171126151,171128878,171138379,171140509,171157664,171161336,171167270,171175330,171177380,171177580	0.812500
Peyers_patch_male_adult_37_years	chrX	66258750	66258751	66258750	+	RAMPAGE_only	19	20	22	1.322562	3.784184	chrX	66258313	66258772	LINE|L2|L2c	-	chrX	66254713	66267383	STRG.148813.6	+	66254713,66256104,66260099,66263643,66266439	66255141,66258979,66260262,66263688,66267383	0.545455
Peyers_patch_male_adult_37_years	chr11	61682439	61682482	61682469	+	High_confidence	2	2	10	0.601164	3.169925	chr11	61682450	61682498	SINE|MIR|MIR3	-	chr11	61682237	61738206	STRG.93103.1	+	61682237,61720111,61720678,61722858,61723433,61725994,61728152,61728930,61731316,61734848,61735560,61735738,61736269,61737181,61737686,61738134	61682600,61720250,61720890,61722960,61723572,61726082,61728287,61729008,61731441,61735002,61735644,61735816,61736350,61737324,61737755,61738206	0.500000
Peyers_patch_male_adult_37_years	chrX	15602157	15602158	15602157	-	High_confidence	12	12	16	0.961863	3.125000	chrX	15602053	15602111	LINE|CR1|L3	-	chrX	15594886	15602148	ACE2|ENST00000484756.1	-	15594886,15600725,15601955	15595003,15601014,15602148	0.937500
Peyers_patch_male_adult_37_years	chr2	39453858	39453882	39453881	+	RAMPAGE_only	3	5	12	0.721397	3.251629	chr2	39453626	39453953	SINE|Alu|AluJo	-	chr2	39443435	39475881	STRG.15437.3	+	39443435,39453838,39454296,39474526	39443748,39453931,39454365,39475881	0.583333
Peyers_patch_male_adult_37_years	chr4	174497596	174497648	174497647	+	RAMPAGE_only	4	4	15	0.901747	3.324863	chr4	174497545	174497875	SINE|Alu|AluSc	-	chr4	174523220	174530218	STRG.43307.1	+	174523220,174526811,174530093	174523421,174526908,174530218	0.800000
Peyers_patch_male_adult_37_years	chr4	86453161	86453212	86453161	-	High_confidence	4	4	34	2.043959	3.866587	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86159297	86453162	MAPK10|ENST00000642049.1	-	86159297,86194318,86354529,86370713,86453029	86159467,86194407,86354644,86370867,86453162	0.970588
Peyers_patch_male_adult_37_years	chrX	48522499	48522504	48522499	-	High_confidence	37	37	75	4.508733	4.793625	chrX	48522480	48522543	LINE|L2|L2b	+	chrX	48521438	48522524	STRG.147983.1	-	48521438	48522524	0.946667
Peyers_patch_male_adult_37_years	chr1	149229367	149229368	149229367	-	High_confidence	18	18	27	1.623144	3.840266	chr1	149229335	149229457	SINE|MIR|MIR3	+	chr1	149190336	149229430	STRG.7942.2	-	149190336,149197995,149198360,149229292	149190531,149198171,149198484,149229430	0.814815
Peyers_patch_male_adult_37_years	chr22	41583996	41584012	41583996	-	RAMPAGE_only	2	2	8	0.480931	2.807355	chr22	41583835	41583953	SINE|MIR|MIRc	-	chr22	41576902	41585402	PMM1|ENST00000482178.5	-	41576902,41577807,41578805,41583958,41584526	41577440,41577923,41578881,41584372,41585402	0.875000
Peyers_patch_male_adult_37_years	chr11	68180141	68180142	68180141	-	High_confidence	10	10	14	0.841630	3.664498	chr11	68180123	68180214	SINE|MIR|MIRc	+	chr11	68171118	68180165	KMT5B|ENST00000323599.10	-	68171118,68171231,68171542,68173803,68174087,68175017,68180131	68171151,68171251,68171709,68173913,68174210,68175183,68180165	0.928571
Peyers_patch_male_adult_37_years	chr5	178224047	178224273	178224153	-	High_confidence	10	10	129	7.755020	5.990694	chr5	178224147	178224424	LINE|L2|L2a	+	chr5	178223387	178224496	PHYKPL|ENST00000504096.1	-	178223387,178224447	178223945,178224496	0.945736
Peyers_patch_male_adult_37_years	chr7	142004470	142004473	142004470	+	RAMPAGE_only	15	15	23	1.382678	3.916127	chr7	142002226	142004691	LINE|L1|L1PB4	+	chr7	141995878	142106747	MGAM|NM_004668.2	+	141995878,142005528,142008505,142019198,142020973,142021585,142022267,142025049,142027114,142027609,142030361,142030640,142031679,142032824,142034261,142034669,142036168,142036822,142038530,142040114,142040721,142047784,142050234,142050696,142052293,142052783,142054753,142055557,142055999,142056829,142058202,142059471,142059855,142060310,142062567,142063498,142064383,142065334,142094619,142094746,142095564,142096330,142097592,142099612,142100801,142102629,142103268,142105813	141995930,142005657,142008705,142019319,142021083,142021737,142022439,142025149,142027227,142027735,142030493,142030757,142031793,142032909,142034379,142034841,142036285,142036977,142038615,142040171,142040846,142047873,142050284,142050864,142052446,142052984,142054908,142055726,142056096,142056942,142058328,142059600,142059966,142060373,142062702,142063586,142064522,142065468,142094654,142094863,142095713,142096415,142097649,142099737,142100890,142102679,142103439,142106747	0.913043
Peyers_patch_male_adult_37_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	40	40	40	2.404657	4.353702	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
Peyers_patch_male_adult_37_years	chr17	10730363	10730372	10730363	-	High_confidence	4	4	14	0.841630	2.699514	chr17	10730332	10730634	SINE|Alu|AluSx1	+	chr17	10713321	10730329	TMEM220|NM_001004313.1	-	10713321,10723269,10725010,10726203,10729030,10729779	10715588,10723329,10725134,10726264,10729060,10730329	1.000000
Peyers_patch_male_adult_37_years	chr16	69990992	69991006	69991005	-	RAMPAGE_only	3	3	11	0.661281	3.121928	chr16	69990692	69991148	LINE|L1|L1M5	+	chr16	69977605	70021930	STRG.123706.4	-	69977605,69978076,69978221,69982349,69982657,69986380,69990596,69996068,69996389,70010750,70011840,70014103,70018046,70021823	69978003,69978112,69978282,69982494,69982757,69986509,69993248,69996226,69996468,70010856,70011929,70014167,70018097,70021930	0.818182
Peyers_patch_male_adult_37_years	chr11	57782399	57782560	57782455	+	RAMPAGE_only	36	37	98	5.891411	5.548230	chr11	57782365	57782743	LTR|ERV1|MER57B1	-	chr11	57761800	57802124	STRG.92925.15	+	57761800,57794009,57795576,57796456,57801732	57791673,57794081,57795729,57796992,57802124	0.989796
Peyers_patch_male_adult_37_years	chr19	50249781	50249819	50249811	+	RAMPAGE_only	20	26	61	3.667103	4.435813	chr19	50249856	50250043	SINE|MIR|MIR	+	chr19	50210365	50309790	MYH14|ENST00000596571.5	+	50210365,50217614,50223082,50223246,50225584,50226902,50230524,50231929,50244241,50247003,50248986,50249649,50250514,50252638,50257298,50259143,50260645,50261474,50263311,50266876,50268160,50271408,50271848,50272559,50275990,50276756,50278082,50280036,50280230,50281593,50286481,50289435,50290886,50292260,50293232,50293563,50301660,50307048,50309004,50309639	50210770,50217771,50223110,50223349,50225677,50226966,50230623,50232070,50244337,50247122,50249139,50249823,50250688,50252753,50257486,50259265,50260715,50261635,50263420,50267008,50268367,50271546,50271972,50272731,50276203,50276901,50278289,50280141,50280383,50281842,50286694,50289648,50291048,50292389,50293321,50293687,50301869,50307157,50309177,50309790	0.950820
Peyers_patch_male_adult_37_years	chr19	29715994	29715995	29715994	-	High_confidence	6	7	9	0.541048	2.500000	chr19	29715796	29716076	SINE|Alu|AluJr	+	chr19	29698885	29715789	C19orf12|NM_001256047.1	-	29698885,29708253,29715562	29702977,29708423,29715789	0.777778
Peyers_patch_male_adult_37_years	chr19	50286305	50286316	50286305	+	RAMPAGE_only	5	5	12	0.721397	3.251629	chr19	50286245	50286337	LINE|L1|L1MEf	-	chr19	50284763	50310539	MYH14|ENST00000595016.1	+	50284763,50289435,50290886,50292260,50293232,50293563,50301660,50307048,50309004,50309639	50286694,50289648,50291048,50292389,50293321,50293687,50301869,50307157,50309177,50310539	1.000000
Peyers_patch_male_adult_37_years	chr5	160412462	160412478	160412462	-	RAMPAGE_only	4	4	9	0.541048	2.500000	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160406348	160408421	SLU7|ENST00000520841.1	-	160406348,160407475,160407745,160407970,160408328	160406629,160407615,160407813,160408068,160408421	0.888889
Peyers_patch_male_adult_37_years	chr4	23762902	23762927	23762926	+	High_confidence	21	23	64	3.847452	5.135700	chr4	23762717	23763262	LTR|ERVL|MLT2A2	+	chr4	23762926	23768625	AC093607.1|ENST00000499715.2	+	23762926,23768318	23763178,23768625	0.937500
Peyers_patch_male_adult_37_years	chr20	51627601	51627626	51627610	-	RAMPAGE_only	7	7	19	1.142212	3.683542	chr20	51627270	51627593	LINE|L2|L2a	-	chr20	51596513	51768328	ATP9A|ENST00000311637.9	-	51596513,51604816,51607526,51608517,51610100,51613676,51617489,51618661,51618953,51622073,51625191,51627599,51628979,51639342,51656937,51669996,51671114,51674152,51676131,51712965,51725818,51729833,51768301	51601347,51605020,51607584,51608626,51610165,51613832,51617554,51618806,51619043,51622172,51625362,51627683,51629072,51639504,51657150,51670109,51671257,51674313,51676208,51713074,51725932,51729978,51768328	0.736842
Peyers_patch_male_adult_37_years	chr5	34244740	34244779	34244778	-	High_confidence	3	3	14	0.841630	3.324863	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.642857
Peyers_patch_male_adult_37_years	chr13	44804996	44805035	44805034	-	RAMPAGE_only	4	4	24	1.442794	3.720129	chr13	44804977	44805053	SINE|Alu|AluYh7	+	chr13	44799502	44809630	LINC00330|ENST00000414562.1	-	44799502,44804719,44809408	44801005,44805030,44809630	0.583333
Peyers_patch_male_adult_37_years	chr5	177317690	177317693	177317692	-	RAMPAGE_only	6	9	10	0.601164	2.947703	chr5	177317093	177318607	LTR|ERVL|MER21-int	-	chr5	177314267	177321066	STRG.51805.1	-	177314267	177321066	0.800000
Peyers_patch_male_adult_37_years	chr17	69196593	69196659	69196658	-	RAMPAGE_only	2	2	10	0.601164	3.321928	chr17	69195559	69197005	Retroposon|SVA|SVA_B	-	chr17	69148591	69225442	ABCA10|ENST00000518929.5	-	69148591,69149032,69149983,69152042,69152361,69153304,69154234,69155018,69155804,69156831,69164073,69164963,69174280,69174606,69175405,69182152,69182674,69185476,69187680,69190357,69191175,69192562,69193109,69193492,69193813,69194384,69196245,69197063,69214703,69215814,69216216,69219544,69221791,69222532,69225324	69148925,69149088,69150063,69152183,69152481,69154009,69154326,69155136,69155925,69156923,69164154,69165083,69174394,69174777,69175513,69182290,69182808,69185643,69187879,69190477,69191315,69192653,69193248,69193612,69193989,69194495,69196483,69197122,69214851,69216000,69216358,69219771,69221895,69222697,69225442	0.900000
Peyers_patch_male_adult_37_years	chr13	98728312	98728343	98728342	-	High_confidence	5	5	13	0.781514	3.418296	chr13	98728114	98728398	LINE|L1|L1M2	-	chr13	98683800	98728888	STRG.108445.3	-	98683800,98686189,98687580,98688247,98688469,98702479,98704288,98706133,98708685,98709571,98709741,98709866,98711853,98712497,98715877,98719236,98721494,98721803,98723911,98726122,98726367	98684915,98686297,98687724,98688356,98688577,98702529,98704435,98706253,98708767,98709660,98709774,98709911,98711943,98712584,98715960,98719320,98721585,98721903,98724031,98726264,98728888	0.923077
Peyers_patch_male_adult_37_years	chr16	2759788	2759837	2759797	+	High_confidence	6	6	23	1.382678	3.849224	chr16	2759705	2759830	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.869565
Peyers_patch_male_adult_37_years	chr2	232816695	232816766	232816731	+	RAMPAGE_only	22	22	80	4.809315	4.849987	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.950000
Peyers_patch_male_adult_37_years	chr3	112332567	112332568	112332567	+	High_confidence	7	7	11	0.661281	2.845351	chr3	112332311	112332606	SINE|Alu|AluY	+	chr3	112332499	112347830	CD200|ENST00000606471.5	+	112332499,112344961,112347557	112332701,112345288,112347830	0.818182
Peyers_patch_male_adult_37_years	chr4	128098279	128098327	128098326	+	RAMPAGE_only	6	6	13	0.781514	3.180833	chr4	128098347	128098409	LINE|L1|L1MC2	+	chr4	128081505	128108854	STRG.41519.9	+	128081505,128098185,128107138	128082305,128098330,128108854	0.769231
Peyers_patch_male_adult_37_years	chr6	113873326	113873357	113873326	-	High_confidence	33	33	124	7.454438	4.884518	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.951613
Peyers_patch_male_adult_37_years	chr16	75513804	75513809	75513804	-	RAMPAGE_only	3	4	11	0.661281	3.095795	chr16	75513471	75513954	LINE|L2|L2a	+	chr16	75471900	75520125	STRG.124075.3	-	75471900,75481816,75490613,75494939,75504680,75505154	75479844,75481891,75490769,75502814,75504824,75520125	0.909091
Peyers_patch_male_adult_37_years	chr20	44351902	44351910	44351902	-	High_confidence	4	4	8	0.480931	2.750000	chr20	44351807	44351944	SINE|MIR|MIR3	-	chr20	44350706	44352102	AL117382.1|ENST00000430481.2	-	44350706,44351867	44350856,44352102	0.625000
Peyers_patch_male_adult_37_years	chr19	40828401	40828417	40828401	+	High_confidence	3	3	6	0.360699	2.584963	chr19	40828417	40828729	SINE|Alu|AluJo	+	chr19	40828426	40829013	STRG.136812.1	+	40828426	40829013	0.833333
Peyers_patch_male_adult_37_years	chr20	44355234	44355256	44355238	-	High_confidence	20	22	65	3.907568	4.996660	chr20	44355193	44355255	SINE|MIR|MIR	+	chr20	44347551	44355185	AL117382.1|ENST00000438702.1	-	44347551,44350619,44351867,44355018	44347818,44350856,44351950,44355185	1.000000
Peyers_patch_male_adult_37_years	chr9	22113500	22113501	22113500	+	High_confidence	12	12	13	0.781514	3.584963	chr9	22113274	22113535	LTR|ERVL-MaLR|MLT1E1	-	chr9	22113677	22120713	STRG.77228.1	+	22113677,22118643,22120199,22120503	22113799,22118767,22120410,22120713	0.538462
Peyers_patch_male_adult_37_years	chr16	66943874	66944223	66944222	+	RAMPAGE_only	448	455	1630	97.989791	7.005784	chr16	66944189	66944323	SINE|Alu|FLAM_A	+	chr16	66934470	66945096	CES2|NR_036684.1	+	66934470,66938036,66939216,66940221,66940436,66941123,66941505,66941767,66942104,66942647,66943298,66943838	66935976,66938241,66939358,66940355,66940695,66941222,66941646,66941848,66942249,66942785,66943371,66945096	0.996933
Peyers_patch_male_adult_37_years	chr2	231072227	231072255	231072227	+	RAMPAGE_only	2	3	11	0.661281	3.095795	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.909091
Peyers_patch_male_adult_37_years	chr16	30354620	30354681	30354680	-	High_confidence	10	13	40	2.404657	4.374895	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.950000
Peyers_patch_male_adult_37_years	chr2	191683259	191683280	191683259	+	High_confidence	3	3	10	0.601164	2.921928	chr2	191683258	191683377	SINE|tRNA-RTE|MamSINE1	+	chr2	191683504	191685076	NABP1|ENST00000462824.1	+	191683504,191684229,191684876	191683804,191684296,191685076	0.600000
Peyers_patch_male_adult_37_years	chr12	4720419	4720471	4720429	+	High_confidence	40	42	173	10.400143	5.443598	chr12	4720007	4720593	LTR|ERVK|LTR14C	-	chr12	4720340	4772726	GALNT8|ENST00000252318.6	+	4720340,4726531,4739162,4744516,4745428,4746143,4760957,4763252,4763951,4765378,4772444	4720888,4726829,4739329,4744700,4745626,4746258,4761143,4763390,4764047,4765546,4772726	0.988439
Peyers_patch_male_adult_37_years	chr11	46274422	46274429	46274422	-	High_confidence	4	4	11	0.661281	2.921928	chr11	46274366	46274400	SINE|MIR|MIR1_Amn	-	chr11	46256354	46274547	LINC02489|ENST00000527239.1	-	46256354,46274380	46256541,46274547	0.636364
Peyers_patch_male_adult_37_years	chr17	39708181	39708194	39708193	+	High_confidence	6	6	10	0.601164	2.947703	chr17	39708092	39708239	SINE|MIR|MIRc	-	chr17	39707403	39726351	ERBB2|ENST00000583038.5	+	39707403,39709317,39709812,39710085,39710339,39711927,39712321,39715285,39715445,39715739,39717319,39719786,39723318,39723537,39723911,39724725,39725048	39708534,39709452,39709881,39710201,39710481,39712047,39712448,39715359,39715536,39716605,39717480,39719834,39723457,39723660,39724010,39724911,39726351	0.900000
Peyers_patch_male_adult_37_years	chr7	142076481	142076533	142076532	+	RAMPAGE_only	3	3	14	0.841630	3.378783	chr7	142076498	142076582	DNA|TcMar-Tigger|Tigger19a	-	chr7	142046194	142106746	STRG.68424.2	+	142046194,142050234,142052293,142052783,142054753,142055557,142055999,142056829,142058202,142059471,142059855,142060310,142062567,142063498,142064383,142065334,142065587,142065714,142066572,142067340,142068646,142070993,142074084,142076202,142076658,142078317,142078807,142080790,142082041,142082474,142083300,142084518,142085832,142086217,142086654,142091912,142092520,142093411,142094363,142094619,142094746,142095564,142096330,142097592,142099612,142100801,142102629,142103268,142105813	142047873,142050864,142052446,142052984,142054908,142055726,142056096,142056942,142058328,142059600,142059966,142060373,142062702,142063586,142064522,142065468,142065622,142065831,142066721,142067425,142068703,142071118,142074173,142076252,142076826,142078470,142079008,142080945,142082210,142082571,142083413,142084644,142085961,142086328,142086717,142092047,142092608,142093550,142094497,142094654,142094863,142095713,142096415,142097649,142099737,142100890,142102679,142103439,142106746	1.000000
Peyers_patch_male_adult_37_years	chr11	75728645	75728646	75728645	+	RAMPAGE_only	29	31	34	2.043959	4.219528	chr11	75728518	75728688	SINE|MIR|MIR3	-	chr11	75719373	75732958	MOGAT2|ENST00000526712.1	+	75719373,75727434,75727969,75728789,75731131	75720170,75727639,75728144,75728989,75732958	0.735294
Peyers_patch_male_adult_37_years	chr8	30812403	30812454	30812453	-	High_confidence	6	6	28	1.683260	4.310443	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.964286
Peyers_patch_male_adult_37_years	chr21	33448822	33448826	33448822	-	High_confidence	3	4	11	0.661281	2.913977	chr21	33448743	33448924	SINE|Alu|AluJo	+	chr21	33432484	33448964	TMEM50B|ENST00000484377.5	-	33432484,33436882,33439213,33448781	33432802,33436992,33439297,33448964	1.000000
Peyers_patch_male_adult_37_years	chr3	37058844	37058907	37058886	-	RAMPAGE_only	21	21	71	4.268267	5.075732	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.985915
Peyers_patch_male_adult_37_years	chr7	55179379	55179380	55179379	+	RAMPAGE_only	9	9	12	0.721397	3.459432	chr7	55179230	55179382	DNA|hAT-Charlie|MER5A	-	chr7	55152336	55207337	EGFR|ENST00000638463.1	+	55152336,55152545,55154010,55155829,55156532,55156758,55157662,55160138,55161498,55163732,55165279,55171174,55172982,55173920,55174721,55181292,55191718,55192765,55198716,55200315,55201187,55201734,55202516,55205255	55152346,55152664,55154152,55155946,55156659,55156832,55157753,55160338,55161631,55163823,55165437,55171213,55173124,55174043,55174820,55181478,55191874,55192841,55198863,55200413,55201355,55201782,55202625,55207337	0.750000
Peyers_patch_male_adult_37_years	chr5	132277851	132277882	132277851	-	High_confidence	7	8	27	1.623144	3.532573	chr5	132277617	132277920	SINE|Alu|AluJr	+	chr5	132274762	132278030	STRG.49531.1	-	132274762	132278030	0.925926
Peyers_patch_male_adult_37_years	chr1	150457392	150457393	150457392	+	RAMPAGE_only	4	4	7	0.420815	2.807355	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150445792	150473556	STRG.8046.2	+	150445792,150457287,150460059,150464526,150470560,150471882	150446401,150457570,150460317,150464727,150471742,150473556	1.000000
Peyers_patch_male_adult_37_years	chr1	17513372	17513438	17513372	+	RAMPAGE_only	7	7	26	1.563027	4.251629	chr1	17513264	17513548	DNA|TcMar-Mariner|MARNA	-	chr1	17539834	17697875	ARHGEF10L|NM_018125.3	+	17539834,17580552,17587459,17588445,17602126,17603507,17607801,17613057,17616093,17619338,17621863,17622995,17624386,17625955,17627329,17632320,17634547,17634834,17637887,17638561,17640201,17648553,17654635,17655878,17656553,17664446,17687572,17695157,17696847	17539950,17580632,17587645,17588479,17602218,17603591,17607977,17613174,17616202,17619445,17621941,17623175,17624503,17626048,17627503,17632466,17634562,17635016,17638003,17638689,17640302,17648675,17654722,17656102,17656708,17664595,17687747,17695280,17697875	0.653846
Peyers_patch_male_adult_37_years	chr8	140347787	140347804	140347790	-	RAMPAGE_only	4	7	27	1.623144	3.763342	chr8	140347419	140347790	LTR|ERV1|MER31B	+	chr8	140283986	140302835	TRAPPC9|ENST00000521167.1	-	140283986,140287607,140290992,140300468,140302684	140284021,140287734,140291078,140300614,140302835	0.851852
Peyers_patch_male_adult_37_years	chr12	109113104	109113105	109113104	+	RAMPAGE_only	5	5	8	0.480931	2.521641	chr12	109112836	109113146	DNA|hAT-Charlie|MER58B	-	chr12	109111217	109139910	STRG.104073.15	+	109111217,109113094,109139396	109111472,109113415,109139910	0.875000
Peyers_patch_male_adult_37_years	chr1	12572735	12572760	12572759	-	RAMPAGE_only	5	7	15	0.901747	3.521641	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.933333
Peyers_patch_male_adult_37_years	chr13	98727971	98728119	98728118	-	High_confidence	11	12	56	3.366520	5.246604	chr13	98727910	98728094	DNA|hAT-Charlie|MER5A	-	chr13	98683800	98728888	STRG.108445.3	-	98683800,98686189,98687580,98688247,98688469,98702479,98704288,98706133,98708685,98709571,98709741,98709866,98711853,98712497,98715877,98719236,98721494,98721803,98723911,98726122,98726367	98684915,98686297,98687724,98688356,98688577,98702529,98704435,98706253,98708767,98709660,98709774,98709911,98711943,98712584,98715960,98719320,98721585,98721903,98724031,98726264,98728888	0.946429
Peyers_patch_male_adult_37_years	chr1	169124603	169124630	169124629	+	RAMPAGE_only	5	6	14	0.841630	3.807355	chr1	169124508	169124714	SINE|MIR|MIRb	+	chr1	169107906	169127399	ATP1B1|ENST00000494797.1	+	169107906,169111369,169124883,169127223	169108163,169111498,169125039,169127399	0.785714
Peyers_patch_male_adult_37_years	chr2	32477538	32477568	32477567	+	RAMPAGE_only	7	7	12	0.721397	3.277613	chr2	32477616	32477749	SINE|Alu|AluJb	+	chr2	32479167	32488496	STRG.15065.6	+	32479167,32481319,32482407,32485642,32487646	32479617,32481453,32482582,32485759,32488496	0.583333
Peyers_patch_male_adult_37_years	chr2	177233994	177234039	177233994	-	RAMPAGE_only	3	3	15	0.901747	3.807355	chr2	177233751	177233962	SINE|MIR|MIRc	-	chr2	177231713	177263567	NFE2L2|ENST00000448782.5	-	177231713,177232391,177233249,177234004,177263436	177232008,177232583,177233339,177234271,177263567	0.533333
Peyers_patch_male_adult_37_years	chr13	42982816	42982817	42982816	-	High_confidence	8	8	8	0.480931	2.750000	chr13	42982678	42983191	LTR|ERV1|MER39	+	chr13	42982051	42982592	STRG.106660.1	-	42982051	42982592	0.625000
Peyers_patch_male_adult_37_years	chr17	16198167	16198168	16198167	-	RAMPAGE_only	5	5	8	0.480931	2.500000	chr17	16198075	16198378	SINE|Alu|AluY	+	chr17	16030093	16194639	NCOR1|NM_001190440.1	-	16030093,16034764,16039432,16040440,16046950,16048844,16057513,16057906,16058470,16061757,16062104,16064067,16064869,16065484,16067893,16070164,16071408,16072144,16073428,16075533,16079963,16080407,16080606,16086281,16091862,16098366,16101249,16108785,16117887,16119422,16121051,16126081,16137310,16138157,16139007,16143605,16146375,16149450,16151945,16153338,16158759,16164978,16171802,16186553,16194461	16032483,16034944,16039654,16040494,16047093,16048988,16057737,16058064,16058599,16061894,16062270,16064187,16065019,16065694,16068121,16070525,16071665,16072228,16073569,16075702,16080064,16080509,16080727,16086442,16092058,16098496,16101805,16108912,16118027,16119485,16121269,16126206,16137412,16138212,16139186,16143696,16146548,16149517,16151998,16153395,16158873,16165161,16171995,16186687,16194639	0.500000
Peyers_patch_male_adult_37_years	chrY	21451814	21451914	21451885	-	High_confidence	18	19	93	5.590829	5.744811	chrY	21451769	21452370	LTR|ERVK|LTR14C	-	chrY	21425950	21451836	STRG.152099.1	-	21425950,21451643	21426263,21451836	0.537634
Peyers_patch_male_adult_37_years	chr1	57308852	57308853	57308852	-	RAMPAGE_only	9	10	12	0.721397	3.459432	chr1	57308696	57308900	SINE|MIR|MIRc	-	chr1	57145416	57309856	STRG.4122.8	-	57145416,57290963,57309747	57145429,57291166,57309856	0.500000
Peyers_patch_male_adult_37_years	chr12	100410563	100410618	100410617	+	High_confidence	74	78	282	16.952835	6.079679	chr12	100410510	100410676	SINE|Alu|AluSx1	+	chr12	100410620	100420089	SLC17A8|ENST00000552697.1	+	100410620,100412769,100418028,100419814	100410699,100412880,100418156,100420089	0.787234
Peyers_patch_male_adult_37_years	chr8	9436175	9436249	9436248	-	High_confidence	6	6	26	1.563027	4.183465	chr8	9436012	9436289	LINE|L2|L2c	-	chr8	9426840	9436187	STRG.69842.1	-	9426840,9435184,9436031	9428465,9435281,9436187	0.807692
Peyers_patch_male_adult_37_years	chr1	119379248	119379318	119379299	-	High_confidence	26	29	138	8.296068	5.879373	chr1	119378945	119379469	LTR|ERVL|MER68	-	chr1	119377929	119379415	STRG.7326.5	-	119377929	119379415	0.594203
Peyers_patch_male_adult_37_years	chr1	196715644	196715645	196715644	+	RAMPAGE_only	4	4	7	0.420815	2.521641	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	1.000000
Peyers_patch_male_adult_37_years	chr17	29643377	29643378	29643377	-	High_confidence	7	8	8	0.480931	2.807355	chr17	29643278	29643403	LTR|ERVL-MaLR|MLT1L	+	chr17	29630799	29643931	STRG.127026.9	-	29630799,29635967,29643100	29632931,29636802,29643931	0.875000
Peyers_patch_male_adult_37_years	chr21	45289339	45289340	45289339	+	High_confidence	4	4	7	0.420815	2.521641	chr21	45289210	45290050	LTR|ERV1|MER4D1	-	chr21	45289057	45290002	STRG.143542.1	+	45289057	45290002	0.571429
Peyers_patch_male_adult_37_years	chr1	205512316	205512317	205512316	+	RAMPAGE_only	19	19	28	1.683260	3.597558	chr1	205512088	205512401	LINE|L2|L2	-	chr1	205504801	205527825	CDK18|ENST00000419301.1	+	205504801,205523146,205523482,205524231,205525138,205526064,205526366,205526774,205527793	205504878,205523297,205523715,205524357,205525195,205526179,205526461,205526837,205527825	0.714286
Peyers_patch_male_adult_37_years	chr7	2242922	2242923	2242922	+	High_confidence	8	8	8	0.480931	2.500000	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
Peyers_patch_male_adult_37_years	chr10	34405962	34405966	34405962	-	RAMPAGE_only	4	5	8	0.480931	3.000000	chr10	34405665	34405965	LTR|ERVL|LTR40b	-	chr10	34312263	34426731	PARD3|ENST00000544292.5	-	34312263,34317106,34331116,34336198,34337277,34341626,34347964,34359146,34360070,34374873,34377966,34382539,34384128,34399329,34401825,34426684	34312382,34317338,34331344,34336243,34337426,34341816,34348115,34359317,34360259,34375002,34378106,34382922,34384254,34399413,34401917,34426731	0.625000
Peyers_patch_male_adult_37_years	chr8	37775922	37775923	37775922	+	RAMPAGE_only	4	4	7	0.420815	2.584963	chr8	37775874	37775923	LINE|CR1|L3	-	chr8	37762592	37779767	PLPBP|ENST00000328195.7	+	37762592,37765525,37765710,37766279,37772754,37775338,37775917,37777972	37762758,37765633,37765746,37766355,37772889,37775481,37776016,37779767	0.857143
Peyers_patch_male_adult_37_years	chr11	67886471	67886518	67886471	+	High_confidence	41	47	165	9.919212	5.715764	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.848485
Peyers_patch_male_adult_37_years	chr4	48546117	48546140	48546139	-	High_confidence	4	4	10	0.601164	2.725481	chr4	48546053	48546089	LINE|CR1|X7C_LINE	-	chr4	48521093	48546759	FRYL|ENST00000513401.5	-	48521093,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066	48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546759	0.500000
Peyers_patch_male_adult_37_years	chr5	88282809	88282838	88282837	+	RAMPAGE_only	5	5	12	0.721397	3.418296	chr5	88282583	88283084	DNA|TcMar-Tigger|Tigger7	-	chr5	88284693	88288159	STRG.47244.3	+	88284693	88288159	0.583333
Peyers_patch_male_adult_37_years	chr10	104053358	104053389	104053388	-	RAMPAGE_only	4	4	15	0.901747	3.373557	chr10	104053217	104053878	LINE|L2|L2a	+	chr10	104031285	104080673	COL17A1|ENST00000369733.8	-	104031285,104032673,104032905,104033237,104033944,104034620,104035473,104036491,104037044,104037635,104038405,104039070,104040350,104041064,104041302,104041484,104042419,104043500,104043824,104045757,104046746,104047738,104048068,104049408,104050088,104050620,104050847,104051480,104052154,104053030,104053919,104054091,104054980,104055371,104055781,104056974,104058145,104059637,104060118,104061404,104062257,104063746,104064437,104070425,104072031,104073209,104074183,104076300,104077421,104078541,104080621	104032290,104032754,104032968,104033375,104034334,104034767,104035563,104036632,104037113,104037773,104038528,104039121,104040410,104041118,104041344,104041538,104042455,104043581,104043860,104045793,104046773,104047810,104048104,104049471,104050124,104050656,104050901,104051516,104052217,104053135,104053982,104054118,104055007,104055401,104056003,104057172,104058190,104059718,104060280,104061473,104062329,104063818,104064596,104070569,104072079,104073245,104074231,104076429,104077526,104078586,104080673	0.866667
Peyers_patch_male_adult_37_years	chr12	109179278	109179289	109179281	+	RAMPAGE_only	8	9	26	1.563027	3.316818	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109175976	109246386	STRG.104073.2	+	109175976,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178	109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246386	1.000000
Peyers_patch_male_adult_37_years	chr7	134527669	134527912	134527815	+	High_confidence	18	18	216	12.985150	6.128162	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527619	134541408	STRG.67978.2	+	134527619,134530642,134531907,134533003,134536649,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134537157,134537661,134538277,134539017,134541408	0.981481
Peyers_patch_male_adult_37_years	chr1	20775846	20775874	20775862	-	RAMPAGE_only	4	4	14	0.841630	3.238901	chr1	20775005	20775936	DNA|TcMar-Tigger|Tigger3b	+	chr1	20775449	20780541	HP1BP3|ENST00000487117.1	-	20775449,20779811,20780344	20776750,20779911,20780541	0.785714
Peyers_patch_male_adult_37_years	chr15	45441877	45441878	45441877	-	High_confidence	12	12	18	1.082096	3.836592	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45430651	45441808	AC025580.1|ENST00000559553.1	-	45430651,45433612,45441780	45430814,45434150,45441808	0.777778
Peyers_patch_male_adult_37_years	chr22	32081756	32081763	32081762	+	RAMPAGE_only	10	10	18	1.082096	2.821888	chr22	32081558	32081768	DNA|hAT-Charlie|MER103C	-	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	0.888889
Peyers_patch_male_adult_37_years	chr5	43476335	43476350	43476335	-	High_confidence	1	1	7	0.420815	2.584963	chr5	43475911	43476497	LTR|ERVL|MLT2F	+	chr5	43475657	43476527	STRG.45031.1	-	43475657	43476527	0.714286
Peyers_patch_male_adult_37_years	chr18	7946875	7946898	7946878	+	High_confidence	77	78	237	14.247595	6.227731	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.911392
Peyers_patch_male_adult_37_years	chr4	142474407	142474443	142474407	-	High_confidence	9	9	25	1.502911	4.163856	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.840000
Peyers_patch_male_adult_37_years	chr4	128428040	128428067	128428063	+	High_confidence	4	4	13	0.781514	3.546594	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428069	128519394	AC108062.1|ENST00000511497.5	+	128428069,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519394	0.923077
Peyers_patch_male_adult_37_years	chr11	28159026	28159027	28159026	+	RAMPAGE_only	11	11	12	0.721397	3.277613	chr11	28157124	28159885	LTR|ERVL|HERVL-int	+	chr11	28157834	28159329	STRG.91923.1	+	28157834	28159329	0.833333
Peyers_patch_male_adult_37_years	chrX	2964535	2964566	2964535	-	High_confidence	3	3	13	0.781514	2.918296	chrX	2964489	2964607	SINE|Alu|AluJb	-	chrX	2934631	2964453	ARSE|NM_001282628.1	-	2934631,2936741,2938094,2943064,2945997,2949303,2953142,2955415,2958273,2959602,2960377,2964223	2935190,2936863,2938257,2943199,2946134,2949727,2953265,2955537,2958435,2959888,2960420,2964453	0.923077
Peyers_patch_male_adult_37_years	chr20	9333276	9333308	9333276	+	High_confidence	250	252	681	40.939293	6.628867	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9333292	9367178	STRG.139202.3	+	9333292,9337125,9338007,9338893,9362895,9365460	9333570,9337206,9338067,9339037,9362975,9367178	0.961821
Peyers_patch_male_adult_37_years	chr6	26260270	26260293	26260270	+	RAMPAGE_only	5	5	12	0.721397	3.277613	chr6	26260008	26260461	LTR|ERVK|LTR22A	+	chr6	26257463	26263424	STRG.53532.1	+	26257463,26261371	26260407,26263424	0.916667
Peyers_patch_male_adult_37_years	chr11	123061128	123061322	123061256	-	High_confidence	43	47	188	11.301890	5.682074	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.930851
Peyers_patch_male_adult_37_years	chr4	152412488	152412498	152412488	-	High_confidence	2	2	7	0.420815	2.807355	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
Peyers_patch_male_adult_37_years	chr3	155665115	155665140	155665139	-	RAMPAGE_only	2	2	8	0.480931	2.521641	chr3	155664915	155665290	LTR|ERVL-MaLR|MLT1J2	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	0.625000
Peyers_patch_male_adult_37_years	chrX	19349983	19350023	19350022	+	RAMPAGE_only	3	3	12	0.721397	2.625815	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19343932	19361685	PDHA1|ENST00000422285.6	+	19343932,19349311,19349936,19351280,19353081,19354490,19355348,19355685,19357651,19358915,19359488	19344094,19349371,19350110,19351407,19353173,19354583,19355504,19355757,19357719,19359024,19361685	0.583333
Peyers_patch_male_adult_37_years	chr5	128085650	128085655	128085654	+	RAMPAGE_only	6	9	17	1.021979	3.734522	chr5	128085624	128085727	LINE|CR1|X7C_LINE	+	chr5	128083847	128188442	SLC12A2|ENST00000343225.4	+	128083847,128112813,128114211,128114585,128131066,128134164,128135699,128138596,128138823,128141829,128147621,128148753,128149996,128151240,128152705,128158052,128161659,128167760,128171666,128174540,128178566,128180882,128182854,128184365,128184788,128186495	128084710,128112933,128114287,128114681,128131206,128134275,128135808,128138724,128138908,128141981,128147729,128148877,128150098,128151396,128152805,128158164,128161800,128167867,128171746,128174666,128178689,128180994,128182941,128184501,128184856,128188442	0.941176
Peyers_patch_male_adult_37_years	chr16	2759893	2760062	2760017	+	High_confidence	12	15	152	9.137698	4.763268	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	0.953947
Peyers_patch_male_adult_37_years	chr11	65429824	65430607	65429831	+	RAMPAGE_only	40	47	1035	62.220511	7.564237	chr11	65429592	65429862	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
Peyers_patch_male_adult_37_years	chr9	89334652	89334722	89334721	+	RAMPAGE_only	4	4	13	0.781514	3.085055	chr9	89334741	89334932	LINE|L1|L1MB3	+	chr9	89332916	89339947	SECISBP2|ENST00000477484.1	+	89332916,89334024,89334521,89338457,89339863	89332986,89334155,89334730,89338580,89339947	0.692308
Peyers_patch_male_adult_37_years	chr20	3795750	3795789	3795750	+	High_confidence	7	8	38	2.284425	4.396229	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
Peyers_patch_male_adult_37_years	chr4	68881079	68881080	68881079	-	High_confidence	65	79	81	4.869431	5.259106	chr4	68880689	68881286	LTR|ERV1|LTR1A2	-	chr4	68880638	68880870	STRG.38831.1	-	68880638	68880870	0.950617
Peyers_patch_male_adult_37_years	chr5	23951355	23951397	23951359	+	High_confidence	7	9	22	1.322562	3.916127	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.909091
Peyers_patch_male_adult_37_years	chr19	52897138	52897146	52897145	-	High_confidence	5	5	9	0.541048	2.750000	chr19	52896741	52897158	LTR|ERV1|MER51C	+	chr19	52896159	52897146	STRG.138012.2	-	52896159	52897146	0.777778
Peyers_patch_male_adult_37_years	chr2	113704173	113704174	113704173	-	High_confidence	9	9	11	0.661281	3.321928	chr2	113703868	113704969	LTR|ERV1|LTR12E	-	chr2	113677701	113704078	AC017074.1|ENST00000424612.1	-	113677701,113688160,113703696	113677783,113688257,113704078	0.636364
Peyers_patch_male_adult_37_years	chr17	69251172	69251194	69251172	-	High_confidence	8	8	16	0.961863	3.750000	chr17	69250697	69251482	LINE|L1|L1MD3	-	chr17	69249287	69251628	ABCA5|ENST00000588106.1	-	69249287,69250471	69249984,69251628	1.000000
Peyers_patch_male_adult_37_years	chr22	37516382	37516394	37516393	-	RAMPAGE_only	3	3	8	0.480931	2.807355	chr22	37516371	37516733	LINE|L1|L1M5	+	chr22	37490361	37519203	CARD10|NM_014550.3	-	37490361,37491754,37492434,37492643,37494085,37495516,37495759,37496448,37497018,37502601,37503184,37504185,37504634,37506191,37507828,37508526,37510211,37515972,37517970,37518965	37491393,37491867,37492550,37492802,37494188,37495586,37496003,37496560,37497178,37502725,37503213,37504301,37504769,37506383,37507954,37508682,37510421,37516298,37518108,37519203	0.500000
Peyers_patch_male_adult_37_years	chr6	127330835	127330938	127330835	-	High_confidence	6	7	37	2.224308	4.437577	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.945946
Peyers_patch_male_adult_37_years	chr20	37345083	37345131	37345126	+	High_confidence	11	11	39	2.344541	4.668913	chr20	37345047	37345146	SINE|MIR|MIR3	+	chr20	37344734	37400870	STRG.140840.5	+	37344734,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114	37345229,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400870	0.717949
Peyers_patch_male_adult_37_years	chr12	69886382	69886445	69886444	+	RAMPAGE_only	10	10	36	2.164192	3.980066	chr12	69886204	69886550	LTR|ERVL-MaLR|MLT1K	-	chr12	69875244	69958723	STRG.102430.2	+	69875244,69879194,69880200,69890970,69893763,69895370,69897155,69903643,69909968,69910820,69926570,69927684,69932512,69936112,69936282,69936452,69952112,69952798,69955362,69957821,69958248,69958444	69879095,69879453,69886970,69891166,69893840,69895481,69897246,69903844,69910077,69910930,69926734,69927748,69932598,69936187,69936335,69936632,69952175,69952886,69955437,69957942,69958323,69958723	0.944444
Peyers_patch_male_adult_37_years	chr22	30665507	30665508	30665507	+	RAMPAGE_only	11	15	17	1.021979	3.452820	chr22	30665244	30665846	LINE|L2|L2b	+	chr22	30636522	30669016	SLC35E4|ENST00000451479.1	+	30636522,30665492,30667600	30637069,30665559,30669016	0.764706
Peyers_patch_male_adult_37_years	chr7	7751684	7751698	7751697	+	RAMPAGE_only	4	4	17	1.021979	3.625000	chr7	7751693	7751981	DNA|hAT-Tip100|Arthur1B	+	chr7	7772360	7879223	UMAD1|ENST00000406829.2	+	7772360,7801669,7877280	7772454,7801743,7879223	0.588235
Peyers_patch_male_adult_37_years	chr7	6590334	6590346	6590334	+	High_confidence	2	2	8	0.480931	3.000000	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.875000
Peyers_patch_male_adult_37_years	chr19	39924882	39924894	39924882	-	RAMPAGE_only	4	4	8	0.480931	2.521641	chr19	39924784	39925077	SINE|Alu|AluSz	+	chr19	39863322	39934626	FCGBP|NM_003890.2	-	39863322,39863620,39866736,39870215,39872077,39873223,39875387,39876657,39877662,39879554,39883304,39885672,39885990,39889478,39891642,39892910,39893921,39895805,39899555,39901924,39902242,39905730,39906246,39906277,39907759,39907767,39910676,39910687,39911073,39911400,39913690,39915184,39918071,39924382,39927058,39934563	39863496,39863892,39867120,39870415,39872651,39873795,39875931,39877274,39878236,39879892,39883446,39885872,39886585,39890071,39892186,39893527,39894495,39896143,39899697,39902124,39902837,39906244,39906276,39906315,39907765,39907776,39910686,39910692,39911082,39911412,39914257,39915789,39918642,39924732,39928306,39934626	0.500000
Peyers_patch_male_adult_37_years	chr4	73104219	73104256	73104244	-	RAMPAGE_only	4	4	13	0.781514	2.584963	chr4	73103951	73104200	DNA|hAT-Charlie|Charlie2b	-	chr4	73098072	73102779	ANKRD17|ENST00000513908.1	-	73098072,73102375	73098520,73102779	0.538462
Peyers_patch_male_adult_37_years	chr11	87367417	87367418	87367417	+	RAMPAGE_only	10	10	10	0.601164	2.521928	chr11	87367014	87367514	LTR|ERVL|LTR33B	-	chr11	87365653	87367759	STRG.95300.3	+	87365653	87367759	0.800000
Peyers_patch_male_adult_37_years	chr9	133276659	133276671	133276659	-	RAMPAGE_only	4	4	12	0.721397	2.732159	chr9	133276496	133276806	LINE|L1|L1MB3	+	chr9	133250400	133275219	ABO|ENST00000453660.4	-	133250400,133257408,133258096,133259818,133261317,133262098,133275161	133256356,133257542,133258132,133259866,133261374,133262168,133275219	0.500000
Peyers_patch_male_adult_37_years	chr17	4009237	4009238	4009237	-	RAMPAGE_only	18	20	24	1.442794	4.168296	chr17	4009105	4009275	SINE|MIR|MIR3	+	chr17	4004444	4017504	STRG.125390.12	-	4004444,4009603,4013448,4016322,4017370	4008954,4009757,4014515,4016466,4017504	0.791667
Peyers_patch_male_adult_37_years	chr4	4269585	4269610	4269609	-	High_confidence	3	4	8	0.480931	2.521641	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.625000
Peyers_patch_male_adult_37_years	chr16	4355592	4355593	4355592	-	High_confidence	23	25	25	1.502911	4.142915	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.720000
Peyers_patch_male_adult_37_years	chr5	151037119	151037141	151037133	-	High_confidence	2	3	8	0.480931	2.807355	chr5	151037023	151037247	SINE|MIR|MIRc	-	chr5	151030483	151037438	TNIP1|ENST00000522574.5	-	151030483,151032286,151033607,151035001,151035581,151036789	151030747,151032383,151033799,151035067,151035707,151037438	0.875000
Peyers_patch_male_adult_37_years	chr9	69123014	69123047	69123014	+	High_confidence	9	10	37	2.224308	4.005958	chr9	69122999	69123107	DNA|hAT-Charlie|MER5A1	+	chr9	69123047	69246746	TJP2|ENST00000647986.1	+	69123047,69151650,69185086,69212547,69216338,69218256,69220886,69225303,69226021,69227764,69227980,69229183,69230081,69234438,69236027,69236948,69237877,69238709,69239936,69246689	69123113,69151771,69185204,69212601,69216463,69218359,69221496,69225407,69226175,69227873,69228114,69229250,69230232,69234547,69236238,69237136,69237973,69238789,69240147,69246746	0.972973
Peyers_patch_male_adult_37_years	chr5	140700445	140700452	140700445	+	High_confidence	95	110	198	11.903054	5.502883	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.984848
Peyers_patch_male_adult_37_years	chr1	24123555	24123580	24123579	-	RAMPAGE_only	5	5	15	0.901747	3.324863	chr1	24123556	24123782	DNA|hAT-Tip100|MER115	-	chr1	24119770	24128479	STRG.1628.4	-	24119770,24123301	24122794,24128479	0.933333
Peyers_patch_male_adult_37_years	chr20	44384649	44384673	44384649	-	RAMPAGE_only	3	3	8	0.480931	3.000000	chr20	44384609	44384776	LTR|ERVL-MaLR|MLT1I	-	chr20	44349198	44395681	STRG.141140.2	-	44349198,44351867,44355018,44384522,44391435	44350856,44351950,44360921,44384672,44395681	0.500000
Peyers_patch_male_adult_37_years	chr6	44126632	44126633	44126632	+	High_confidence	58	58	83	4.989664	5.300196	chr6	44126578	44126686	LINE|CR1|X7A_LINE	-	chr6	44126659	44140328	STRG.54854.4	+	44126659,44126797,44134560,44135016,44135327,44136348,44138479,44139466,44139707,44140251	44126715,44127141,44134743,44135096,44135366,44136439,44138517,44139609,44139759,44140328	0.987952
Peyers_patch_male_adult_37_years	chr9	132935078	132935097	132935096	-	High_confidence	3	4	8	0.480931	2.500000	chr9	132935029	132935100	SINE|tRNA|LFSINE_Vert	+	chr9	132910260	132935090	TSC1|ENST00000647078.1	-	132910260,132911001,132911409,132912281,132921362,132921818,132923347,132925586,132927200,132928766,132935032	132910689,132911113,132911568,132912457,132921436,132921973,132923492,132925739,132927304,132928952,132935090	0.750000
Peyers_patch_male_adult_37_years	chr8	75324331	75324352	75324331	-	High_confidence	4	4	8	0.480931	2.750000	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.875000
Peyers_patch_male_adult_37_years	chr19	49539145	49539176	49539145	+	RAMPAGE_only	4	4	15	0.901747	3.378783	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49527617	49543638	RCN3|ENST00000270645.7	+	49527617,49528466,49534192,49537032,49539118,49542552,49543105	49528058,49528714,49534395,49537205,49539179,49542752,49543638	0.933333
Peyers_patch_male_adult_37_years	chr9	109251793	109251828	109251793	-	RAMPAGE_only	7	7	15	0.901747	3.640224	chr9	109251693	109251821	LINE|L2|L2c	-	chr9	109243253	109256569	STRG.80813.3	-	109243253,109247755,109251480,109255510,109255773	109243682,109247789,109253550,109255680,109256569	0.933333
Peyers_patch_male_adult_37_years	chr11	57814167	57814181	57814171	+	High_confidence	3	6	14	0.841630	3.026987	chr11	57814032	57814187	SINE|Alu|AluJr4	+	chr11	57813916	57815481	CTNND1|ENST00000525821.1	+	57813916,57815393	57814373,57815481	0.571429
Peyers_patch_male_adult_37_years	chr7	6590246	6590300	6590285	+	High_confidence	4	5	21	1.262445	3.916127	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.666667
Peyers_patch_male_adult_37_years	chr17	75620735	75620869	75620868	+	High_confidence	22	23	99	5.951527	4.950148	chr17	75620790	75620901	LINE|L2|L2b	+	chr17	75620893	75622058	MYO15B|ENST00000577613.1	+	75620893,75621344,75622003	75621176,75621570,75622058	0.767677
Peyers_patch_male_adult_37_years	chr2	37929501	37929523	37929522	+	High_confidence	6	7	12	0.721397	3.277613	chr2	37929546	37929613	LINE|L1|HAL1M8	+	chr2	37928758	38017744	RMDN2|ENST00000406384.5	+	37928758,37929261,37974039,37975211,37981282,37989540,37991219,37997415,38003990,38004135,38017185	37928936,37929729,37974214,37975314,37981343,37989616,37991297,37997514,38004044,38004216,38017744	0.916667
Peyers_patch_male_adult_37_years	chr3	155664978	155664995	155664978	-	RAMPAGE_only	2	2	9	0.541048	2.725481	chr3	155664915	155665290	LTR|ERVL-MaLR|MLT1J2	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	1.000000
Peyers_patch_male_adult_37_years	chr13	18280048	18280076	18280048	-	High_confidence	2	2	11	0.661281	3.121928	chr13	18279944	18280243	LINE|L2|L2a	+	chr13	18273029	18279988	STRG.105449.1	-	18273029,18279319	18273950,18279988	0.818182
Peyers_patch_male_adult_37_years	chr7	141986113	141986130	141986114	-	High_confidence	8	12	16	0.961863	3.373557	chr7	141980085	141986114	LINE|L1|L1PA3	-	chr7	141985591	141985883	STRG.68425.1	-	141985591	141985883	0.562500
Peyers_patch_male_adult_37_years	chr10	87872898	87872899	87872898	+	RAMPAGE_only	4	4	7	0.420815	2.521641	chr10	87872918	87872994	SINE|MIR|MIRb	+	chr10	87869731	87874105	STRG.87306.1	+	87869731	87874105	0.857143
Peyers_patch_male_adult_37_years	chr1	2048537	2048551	2048550	+	RAMPAGE_only	21	32	54	3.246288	4.645670	chr1	2048414	2048562	LINE|L2|L2a	-	chr1	2050469	2185395	PRKCZ|ENST00000378567.7	+	2050469,2055440,2056483,2059540,2135261,2144209,2146026,2148871,2150789,2155994,2169517,2172054,2172300,2173896,2174753,2175223,2184582,2184921	2050701,2055562,2056573,2059591,2135347,2144341,2146108,2148924,2150978,2156092,2169604,2172190,2172388,2174016,2174833,2175313,2184698,2185395	0.870370
Peyers_patch_male_adult_37_years	chr4	92026135	92026136	92026135	+	High_confidence	46	47	51	3.065938	4.956247	chr4	92025771	92026242	LTR|ERV1|LTR7Y	+	chr4	92026147	92028406	STRG.39904.1	+	92026147,92027874	92026388,92028406	0.843137
Peyers_patch_male_adult_37_years	chr12	47904614	47904646	47904632	-	High_confidence	3	3	16	0.961863	3.327820	chr12	47904577	47904684	LINE|CR1|L3	-	chr12	47842627	47905003	VDR|ENST00000550325.5	-	47842627,47846334,47846656,47855629,47857128,47857503,47865046,47878967,47882693,47904563	47845005,47846451,47846808,47855801,47857249,47857688,47865177,47879115,47882774,47905003	0.875000
Peyers_patch_male_adult_37_years	chr12	53464773	53464850	53464774	+	RAMPAGE_only	8	11	37	2.224308	4.885129	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.756757
Peyers_patch_male_adult_37_years	chr15	45397248	45397334	45397283	-	High_confidence	173	173	990	59.515272	6.035902	chr15	45397083	45398013	LTR|ERVL|MER21C	+	chr15	45361125	45397259	STRG.116161.4	-	45361125,45364796,45366045,45366370,45368069,45369325,45376600,45396921	45364016,45364860,45366210,45366508,45368260,45369521,45376819,45397259	0.994949
Peyers_patch_male_adult_37_years	chr17	42980374	42980410	42980395	-	High_confidence	5	5	15	0.901747	3.378783	chr17	42980326	42980440	LINE|L2|L2a	+	chr17	42968725	42980349	PTGES3L|ENST00000462157.5	-	42968725,42970288,42971606,42979169,42979377	42969186,42970342,42971696,42979268,42980349	0.933333
Peyers_patch_male_adult_37_years	chr19	58312242	58312243	58312242	+	RAMPAGE_only	7	7	8	0.480931	2.807355	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.625000
Peyers_patch_male_adult_37_years	chr21	29077437	29077507	29077486	+	High_confidence	10	14	33	1.983842	4.513795	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.727273
Peyers_patch_male_adult_37_years	chr6	33313223	33313226	33313223	-	High_confidence	3	3	8	0.480931	2.807355	chr6	33313036	33313184	SINE|MIR|MIR3	-	chr6	33304267	33314041	TAPBP|ENST00000437116.2	-	33304267,33304988,33313216,33313693,33314004	33304638,33305387,33313477,33313864,33314041	0.875000
Peyers_patch_male_adult_37_years	chr10	94683469	94683484	94683483	+	High_confidence	16	16	33	1.983842	4.369707	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_001128925.1	+	94683493,94687769,94688124,94694916,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94720537,94724533,94733438,94736190	0.969697
Peyers_patch_male_adult_37_years	chr7	99761178	99761229	99761228	-	RAMPAGE_only	14	14	40	2.404657	4.753056	chr7	99761216	99761430	DNA|TcMar-Tigger|MamRep137	-	chr7	99756075	99780053	STRG.65827.3	-	99756075,99760818,99761775,99763854,99766376,99767130,99768353,99769767,99770121,99772589,99778027,99779991	99758228,99760981,99762267,99764015,99766443,99767258,99768502,99769856,99770235,99772689,99778080,99780053	0.600000
Peyers_patch_male_adult_37_years	chr18	49872174	49872211	49872174	-	RAMPAGE_only	16	16	28	1.683260	4.282484	chr18	49871998	49872125	SINE|MIR|MIR3	-	chr18	49863261	49876283	MYO5B|ENST00000587895.1	-	49863261,49864140,49872166,49875686,49876235	49863327,49864380,49872232,49875827,49876283	0.821429
Peyers_patch_male_adult_37_years	chr1	155637559	155637604	155637559	-	High_confidence	4	4	13	0.781514	3.546594	chr1	155637451	155637661	LTR|ERV1|LTR12F	-	chr1	155632695	155637699	STRG.8477.1	-	155632695,155637393	155634846,155637699	0.538462
Peyers_patch_male_adult_37_years	chr13	46374832	46374833	46374832	-	RAMPAGE_only	19	19	23	1.382678	4.088779	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46371859	46372750	STRG.106886.2	-	46371859	46372750	0.782609
Peyers_patch_male_adult_37_years	chr12	57050696	57050720	57050719	-	High_confidence	111	127	184	11.061424	6.509822	chr12	57050705	57050920	SINE|MIR|MIRc	-	chr12	57028516	57050765	MYO1A|NM_001256041.1	-	57028516,57029131,57029434,57029739,57030209,57031039,57036306,57036771,57036941,57037547,57037868,57038411,57038808,57039211,57041183,57041431,57043071,57043239,57043855,57044105,57046551,57046862,57047060,57047302,57047626,57047988,57048209,57049886,57050717	57028881,57029259,57029587,57029872,57030316,57031174,57036381,57036840,57037091,57037641,57038069,57038638,57039009,57039274,57041288,57041497,57043158,57043358,57044003,57044209,57046650,57046926,57047107,57047407,57047721,57048104,57048343,57050106,57050765	0.608696
Peyers_patch_male_adult_37_years	chr2	227534932	227534964	227534932	+	RAMPAGE_only	6	7	18	1.082096	3.947703	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.722222
Peyers_patch_male_adult_37_years	chrX	32854088	32854109	32854088	-	RAMPAGE_only	2	2	9	0.541048	3.169925	chrX	32851464	32854639	LINE|L1|L1MA3	+	chrX	32573610	32849802	DMD|ENST00000447523.1	-	32573610,32573744,32823294,32844782,32849727	32573637,32573846,32823387,32844860,32849802	0.666667
Peyers_patch_male_adult_37_years	chr6	129584080	129584112	129584080	-	RAMPAGE_only	2	2	10	0.601164	2.846439	chr6	129583973	129584076	LINE|RTE-BovB|MamRTE1	-	chr6	129578418	129596875	ARHGAP18|ENST00000483367.5	-	129578418,129580069,129583987,129596788	129578604,129580131,129584112,129596875	0.800000
Peyers_patch_male_adult_37_years	chr1	119379424	119379446	119379424	-	High_confidence	9	14	22	1.322562	4.061482	chr1	119378945	119379469	LTR|ERVL|MER68	-	chr1	119377929	119379415	STRG.7326.5	-	119377929	119379415	0.863636
Peyers_patch_male_adult_37_years	chr20	34546827	34546866	34546843	+	High_confidence	113	118	310	18.636095	7.365514	chr20	34546707	34546884	LTR|ERVL-MaLR|MLT1J	-	chr20	34546853	34560245	STRG.140543.2	+	34546853,34549904,34559207,34559346,34559735	34546916,34559069,34559263,34559453,34560245	0.616129
Peyers_patch_male_adult_37_years	chr10	46554575	46554632	46554586	-	RAMPAGE_only	6	7	18	1.082096	3.807764	chr10	46554368	46554805	LTR|LTR|MamRep1527	+	chr10	46549048	46556645	STRG.85167.4	-	46549048,46551415,46555374	46550742,46554695,46556645	0.944444
Peyers_patch_male_adult_37_years	chr22	38099191	38099246	38099191	-	RAMPAGE_only	5	5	20	1.202329	3.884184	chr22	38099105	38099253	SINE|MIR|MIR3	+	chr22	38085164	38110645	STRG.145095.1	-	38085164,38085685,38086241,38087123,38088747,38089095,38089521,38097031,38098062,38098410,38098984,38107851,38108254,38109132,38109364,38110474	38085375,38085732,38086449,38087264,38088964,38089231,38089674,38097178,38098179,38098482,38099228,38107913,38108341,38109208,38109937,38110645	0.750000
Peyers_patch_male_adult_37_years	chr11	65434070	65434631	65434552	+	RAMPAGE_only	30	32	678	40.758944	7.277930	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
Peyers_patch_male_adult_37_years	chr17	38898168	38898188	38898168	+	RAMPAGE_only	6	6	17	1.021979	3.057476	chr17	38897969	38898235	SINE|MIR|MIRb	+	chr17	38890233	38915129	LASP1|ENST00000581485.1	+	38890233,38898411,38914324,38915042	38890504,38898519,38914475,38915129	0.764706
Peyers_patch_male_adult_37_years	chr3	9792205	9792226	9792225	-	High_confidence	6	6	10	0.601164	3.169925	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9786978	9792633	STRG.25969.5	-	9786978,9787198,9789508,9791259,9792215	9787109,9787340,9789963,9791493,9792633	0.600000
Peyers_patch_male_adult_37_years	chr3	136625270	136625271	136625270	-	RAMPAGE_only	39	39	50	3.005822	4.970176	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.880000
Peyers_patch_male_adult_37_years	chr9	39809856	39809859	39809858	-	High_confidence	4	7	11	0.661281	3.121928	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803678	39810037	STRG.78063.2	-	39803678,39809485	39803859,39810037	0.727273
Peyers_patch_male_adult_37_years	chr7	101217578	101217581	101217578	-	High_confidence	7	7	13	0.781514	3.418296	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.923077
Peyers_patch_male_adult_37_years	chr1	16620316	16620347	16620316	-	RAMPAGE_only	3	4	10	0.601164	2.721928	chr1	16620125	16620324	LINE|L2|L2c	-	chr1	16618255	16631109	CROCCP2|ENST00000639594.1	-	16618255,16619844,16625774,16626352,16627144,16628467,16630889	16619103,16620245,16626005,16626499,16627289,16628650,16631109	0.700000
Peyers_patch_male_adult_37_years	chr5	1585074	1585108	1585106	-	RAMPAGE_only	3	5	10	0.601164	2.503258	chr5	1584920	1585091	LTR|ERVK|HERVK9-int	-	chr5	1573684	1582555	STRG.43939.3	-	1573684,1576178,1579276	1574295,1576309,1582555	0.500000
Peyers_patch_male_adult_37_years	chr11	71480163	71480222	71480163	+	High_confidence	3	3	19	1.142212	3.614369	chr11	71480150	71480472	SINE|Alu|AluSq2	-	chr11	71480148	71490876	NADSYN1|ENST00000526039.6	+	71480148,71480754,71481355,71482000,71482848,71484311,71485541,71490844	71480274,71480879,71481404,71482025,71483017,71484447,71485648,71490876	0.894737
Peyers_patch_male_adult_37_years	chr8	144427929	144427954	144427932	+	High_confidence	7	9	27	1.623144	4.532665	chr8	144427788	144427946	LINE|L2|L2	-	chr8	144428047	144428638	STRG.76113.1	+	144428047	144428638	0.962963
Peyers_patch_male_adult_37_years	chr12	6355376	6355400	6355385	-	RAMPAGE_only	2	3	8	0.480931	2.521641	chr12	6355373	6355427	LINE|CR1|X6B_LINE	+	chr12	6346846	6364147	SCNN1A|ENST00000540037.5	-	6346846,6348726,6348949,6349163,6349326,6354437,6354749,6355271,6355776,6362067,6363442	6348253,6348802,6349005,6349221,6349405,6354555,6354848,6355435,6355880,6362241,6364147	0.500000
Peyers_patch_male_adult_37_years	chr19	39378556	39378587	39378586	+	High_confidence	2	2	6	0.360699	2.584963	chr19	39378626	39378893	SINE|Alu|AluY	+	chr19	39378504	39381296	SAMD4B|ENST00000595476.1	+	39378504,39379965,39380586,39380989	39378589,39380084,39380785,39381296	1.000000
Peyers_patch_male_adult_37_years	chr14	73463608	73463642	73463633	-	High_confidence	3	4	14	0.841630	3.546594	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73458849	73463635	AC005280.2|ENST00000647202.1	-	73458849,73462528,73463474	73459305,73462689,73463635	0.642857
Peyers_patch_male_adult_37_years	chr11	46373071	46373096	46373071	+	RAMPAGE_only	2	2	8	0.480931	2.750000	chr11	46373115	46373259	SINE|MIR|MIR	+	chr11	46371724	46380367	STRG.92510.7	+	46371724,46372074,46372427,46372616,46372960,46374156,46374398,46374603,46374765,46374933,46375431,46375850,46376065,46376327,46376523,46377072,46378197,46378456,46378990,46379202,46379468,46379830	46371775,46372170,46372510,46372884,46373101,46374235,46374454,46374666,46374839,46375045,46375631,46375951,46376145,46376397,46376564,46377212,46378229,46378500,46379111,46379236,46379568,46380367	1.000000
Peyers_patch_male_adult_37_years	chr10	44971669	44971677	44971669	+	High_confidence	2	2	7	0.420815	2.521641	chr10	44971649	44971712	SINE|MIR|MIRb	-	chr10	44971793	44993430	RASSF4|ENST00000472561.5	+	44971793,44982520,44984812,44989273,44989669,44990947,44991904,44993268	44971848,44982663,44984970,44989375,44989721,44991069,44992002,44993430	0.714286
Peyers_patch_male_adult_37_years	chr3	11225963	11225999	11225998	+	High_confidence	12	14	66	3.967685	4.985690	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.818182
Peyers_patch_male_adult_37_years	chr7	15668185	15668229	15668217	+	High_confidence	8	13	33	1.983842	4.513795	chr7	15668111	15668470	DNA|TcMar-Tigger|Tigger2a	+	chr7	15667946	15681980	AC005550.2|ENST00000451240.1	+	15667946,15676019,15677462,15678913	15668296,15676160,15677647,15681980	1.000000
Peyers_patch_male_adult_37_years	chr1	6208681	6208682	6208681	-	High_confidence	47	47	47	2.825472	4.398446	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.978723
Peyers_patch_male_adult_37_years	chr11	118647768	118647829	118647768	+	RAMPAGE_only	4	4	35	2.104075	4.593429	chr11	118647666	118647768	SINE|MIR|MIRb	-	chr11	118646333	118657152	PHLDB1|ENST00000526537.2	+	118646333,118650076,118650444,118655604,118656682	118648076,118650193,118650547,118655690,118657152	0.800000
Peyers_patch_male_adult_37_years	chr11	119110890	119110922	119110890	+	High_confidence	48	48	85	5.109897	5.488908	chr11	119110843	119110902	LINE|CR1|L3b	+	chr11	119111056	119117121	C2CD2L|ENST00000528586.2	+	119111056,119111262,119111520,119112327,119112481,119112699,119113610,119113854,119114079,119116024	119111168,119111374,119111629,119112392,119112609,119112874,119113712,119113988,119114365,119117121	0.858824
Peyers_patch_male_adult_37_years	chr18	47920105	47920115	47920114	-	RAMPAGE_only	5	5	11	0.661281	3.095795	chr18	47919993	47920302	LTR|ERVL-MaLR|MLT1A0	-	chr18	47870474	47923642	SMAD2|ENST00000585978.1	-	47870474,47896520,47920071,47922546,47923565	47870564,47896809,47920169,47922655,47923642	0.818182
Peyers_patch_male_adult_37_years	chrX	22086238	22086244	22086238	+	RAMPAGE_only	4	4	9	0.541048	3.000000	chrX	22086029	22086733	LINE|L1|L1M3f	-	chrX	22090492	22099363	PHEX|ENST00000475778.1	+	22090492,22093982,22096954,22099005	22090497,22094099,22097038,22099363	0.777778
Peyers_patch_male_adult_37_years	chr4	1241325	1241360	1241353	-	High_confidence	3	3	14	0.841630	3.180833	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1241463	STRG.36064.16	-	1225437,1238182,1241324	1228343,1238337,1241463	0.857143
Peyers_patch_male_adult_37_years	chr2	98704712	98704739	98704738	-	RAMPAGE_only	3	3	8	0.480931	2.750000	chr2	98704462	98704785	SINE|Alu|AluJo	+	chr2	98619105	98726696	MGAT4A|ENST00000264968.7	-	98619105,98625722,98635221,98636516,98639807,98640120,98643922,98645427,98655444,98656351,98658217,98663045,98675034,98678303,98726238	98625592,98625835,98635288,98636595,98640001,98640228,98644053,98645542,98655520,98656465,98658264,98663179,98675175,98678471,98726696	0.625000
Peyers_patch_male_adult_37_years	chr7	107253065	107253088	107253087	-	High_confidence	3	5	11	0.661281	2.921928	chr7	107252247	107253175	LINE|L1|L1MEf	+	chr7	107210454	107253247	COG5|ENST00000464542.5	-	107210454,107211098,107230614,107236449,107248395,107253047	107210605,107211225,107230691,107236687,107248499,107253247	0.818182
Peyers_patch_male_adult_37_years	chr12	132782313	132782341	132782313	-	RAMPAGE_only	4	4	15	0.901747	3.323231	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132768914	132822311	GOLGA3|ENST00000450791.6	-	132768914,132774156,132775140,132776633,132776957,132777665,132780797,132782295,132784163,132786338,132786692,132789026,132791215,132795851,132796538,132798339,132801766,132804715,132807176,132807890,132813306,132816539,132821995	132773294,132774320,132775305,132776756,132777090,132777805,132780914,132782493,132784307,132786555,132786787,132789290,132791293,132796220,132796700,132798477,132801969,132805022,132807288,132808549,132813419,132816812,132822311	1.000000
Peyers_patch_male_adult_37_years	chr2	61178399	61178426	61178399	+	High_confidence	4	4	11	0.661281	2.921928	chr2	61178267	61178502	SINE|Alu|AluSx3	-	chr2	61178377	61186769	AHSA2P|ENST00000642505.1	+	61178377,61181319,61183546,61184711,61185501,61185979,61186445,61186616	61179171,61181405,61183662,61184800,61185618,61186081,61186497,61186769	0.909091
Peyers_patch_male_adult_37_years	chr5	134780702	134780717	134780716	+	High_confidence	3	3	8	0.480931	2.500000	chr5	134780759	134781036	SINE|Alu|AluJr4	+	chr5	134780735	134789623	STRG.49773.4	+	134780735,134781920,134782944,134784365,134788512	134781246,134782086,134783065,134785586,134789623	1.000000
Peyers_patch_male_adult_37_years	chr14	81192644	81192682	81192654	-	RAMPAGE_only	7	7	36	2.164192	4.381580	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.944444
Peyers_patch_male_adult_37_years	chr4	105556409	105556443	105556421	+	RAMPAGE_only	7	7	33	1.983842	4.413910	chr4	105556273	105556541	LINE|L2|L2c	-	chr4	105552621	105680913	ARHGEF38|ENST00000420470.2	+	105552621,105589247,105613383,105630897,105636402,105645187,105648548,105654064,105655602,105659053,105666176,105667128,105667443,105677751	105552961,105589435,105613507,105631045,105636420,105645387,105648682,105654169,105655722,105659365,105666320,105667327,105667703,105680913	0.636364
Peyers_patch_male_adult_37_years	chr17	42136456	42136468	42136456	-	High_confidence	1	1	7	0.420815	2.584963	chr17	42136440	42136680	SINE|MIR|MIRb	+	chr17	42128329	42136431	RAB5C|ENST00000552162.5	-	42128329,42128648,42130336,42136340	42128383,42128800,42130590,42136431	0.571429
Peyers_patch_male_adult_37_years	chr3	155089705	155089706	155089705	+	RAMPAGE_only	8	8	8	0.480931	2.750000	chr3	155089712	155089974	SINE|Alu|AluSz	+	chr3	155080020	155090500	MME|ENST00000382989.7	+	155080020,155084157,155085058,155089833	155080466,155084327,155085094,155090500	0.875000
Peyers_patch_male_adult_37_years	chr1	162419798	162419881	162419835	+	High_confidence	17	17	134	8.055602	5.613323	chr1	162419359	162419942	LTR|ERVK|LTR14C	+	chr1	162419822	162447246	STRG.8767.1	+	162419822,162445548,162446297	162420066,162445881,162447246	0.649254
Peyers_patch_male_adult_37_years	chr8	144490184	144490193	144490184	+	High_confidence	11	13	20	1.202329	4.037401	chr8	144490224	144490523	SINE|Alu|AluSx1	+	chr8	144490093	144500954	STRG.76129.4	+	144490093,144496460,144497409,144498769,144498915,144500095,144500266,144500685,144500841	144490212,144497293,144497453,144498840,144499061,144500199,144500612,144500761,144500954	0.900000
Peyers_patch_male_adult_37_years	chr16	81664343	81664344	81664343	+	RAMPAGE_only	12	12	17	1.021979	3.616875	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.941176
Peyers_patch_male_adult_37_years	chr18	39800271	39800298	39800293	-	High_confidence	3	3	12	0.721397	3.095795	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.583333
Peyers_patch_male_adult_37_years	chr9	127531649	127531650	127531649	-	RAMPAGE_only	4	4	7	0.420815	2.584963	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	0.857143
Peyers_patch_male_adult_37_years	chr9	17014135	17014165	17014148	+	RAMPAGE_only	7	7	47	2.825472	4.979705	chr9	17013826	17014266	LTR|ERVL|MLT2B1	+	chr9	17020069	17049604	STRG.76701.1	+	17020069,17048918	17020316,17049604	0.659574
Peyers_patch_male_adult_37_years	chr7	128641006	128641007	128641006	+	High_confidence	10	10	10	0.601164	3.121928	chr7	128640990	128641042	LTR|ERVL|LTR41	+	chr7	128641240	128660998	LINC01000|NR_024368.1	+	128641240,128642216,128648791,128651037,128651188	128641379,128642281,128648982,128651095,128660998	0.700000
Peyers_patch_male_adult_37_years	chr1	153967495	153967512	153967511	+	High_confidence	6	6	22	1.322562	3.663533	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.863636
Peyers_patch_male_adult_37_years	chr6	2768837	2768847	2768837	+	High_confidence	3	3	8	0.480931	2.521641	chr6	2768884	2768965	SINE|MIR|MIRc	+	chr6	2768772	2785745	WRNIP1|ENST00000380764.1	+	2768772,2770119,2779262,2783405,2784323,2785006	2768882,2770361,2779492,2783561,2784403,2785745	0.750000
Peyers_patch_male_adult_37_years	chr15	76576999	76577011	76577010	-	High_confidence	4	5	9	0.541048	3.000000	chr15	76576480	76577164	LINE|L1|L1MA3	+	chr15	76471261	76576985	SCAPER|ENST00000569784.1	-	76471261,76504858,76567269,76574157,76576858	76471335,76504974,76567405,76574284,76576985	0.777778
Peyers_patch_male_adult_37_years	chr10	17759822	17759844	17759822	+	RAMPAGE_only	3	3	11	0.661281	3.121928	chr10	17759778	17760011	SINE|Alu|AluYk4	+	chr10	17752251	17800868	STRG.83745.2	+	17752251,17771308,17776028,17795920	17760167,17771381,17776170,17800868	0.727273
Peyers_patch_male_adult_37_years	chr16	3081062	3081063	3081062	-	RAMPAGE_only	4	4	7	0.420815	2.521641	chr16	3080480	3081056	LTR|ERVK|HERVK9-int	-	chr16	3078319	3087087	AC108134.3|ENST00000574387.1	-	3078319,3080963,3086890	3078676,3081086,3087087	0.714286
Peyers_patch_male_adult_37_years	chr11	64277030	64277031	64277030	-	RAMPAGE_only	11	11	11	0.661281	3.277613	chr11	64276998	64277114	SINE|MIR|MIR1_Amn	-	chr11	64276760	64284704	BAD|ENST00000544271.1	-	64276760,64284181,64284630	64277043,64284376,64284704	0.636364
Peyers_patch_male_adult_37_years	chr1	31666478	31666511	31666486	-	High_confidence	6	7	33	1.983842	4.476410	chr1	31666238	31666608	LINE|L2|L2a	+	chr1	31660584	31666385	COL16A1|ENST00000470799.5	-	31660584,31661065,31661413,31661659,31662333,31662586,31665171,31665582,31665881,31666036	31660638,31661119,31661458,31661704,31662387,31662658,31665234,31665618,31665935,31666385	0.818182
Peyers_patch_male_adult_37_years	chr15	71332189	71332241	71332240	+	High_confidence	7	9	21	1.262445	3.975418	chr15	71331901	71332325	LTR|ERVL|LTR16B2	-	chr15	71331433	71783375	STRG.118259.2	+	71331433,71411686,71660529,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71771063,71777231	71332372,71411823,71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71771208,71783375	0.761905
Peyers_patch_male_adult_37_years	chr3	134057715	134057767	134057715	-	High_confidence	4	4	25	1.502911	4.213661	chr3	134057661	134057803	DNA|hAT-Ac|OldhAT1	-	chr3	134055249	134057648	LOC100507210|NR_135574.1	-	134055249,134057409	134055660,134057648	0.600000
Peyers_patch_male_adult_37_years	chr11	107441565	107441593	107441565	-	RAMPAGE_only	4	4	11	0.661281	3.459432	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	1.000000
Peyers_patch_male_adult_37_years	chr17	16464656	16464696	16464695	-	RAMPAGE_only	9	11	37	2.224308	4.551462	chr17	16464610	16464686	DNA|hAT-Charlie|Charlie24	-	chr17	16443260	16492018	LRRC75A|ENST00000470794.1	-	16443260,16447844,16462257,16491744	16444131,16447960,16462386,16492018	0.567568
Peyers_patch_male_adult_37_years	chr1	206929142	206929358	206929357	-	RAMPAGE_only	248	259	1237	74.364031	6.263899	chr1	206929265	206929570	SINE|Alu|AluY	+	chr1	206928517	206946466	PIGR|ENST00000356495.4	-	206928517,206931496,206931670,206932455,206932985,206934419,206935485,206937094,206939118,206940488,206946335	206930413,206931555,206931802,206932577,206933166,206934746,206935818,206937751,206939463,206940584,206946466	0.995150
Peyers_patch_male_adult_37_years	chr2	237579276	237579329	237579328	-	High_confidence	4	5	17	1.021979	3.734522	chr2	237579285	237579685	LTR|ERVL-MaLR|MLT1C	-	chr2	237574325	237579570	RAB17|ENST00000477149.5	-	237574325,237575386,237577256	237575128,237575480,237579570	0.941176
Peyers_patch_male_adult_37_years	chr7	12624919	12624953	12624952	+	RAMPAGE_only	8	9	25	1.502911	3.729446	chr7	12624833	12624982	LINE|L1|L1MB8	-	chr7	12622837	12626541	SCIN|ENST00000476649.1	+	12622837,12625009,12625761	12622893,12625142,12626541	0.880000
Peyers_patch_male_adult_37_years	chr8	35744035	35744063	35744035	+	RAMPAGE_only	2	2	17	1.021979	3.750000	chr8	35743605	35744700	LINE|L1|L1MC4	-	chr8	35724150	35791310	UNC5D|ENST00000449677.1	+	35724150,35726151,35731011,35748526,35750581,35759319,35766901,35774298,35790358	35724292,35726529,35731096,35748695,35750809,35759469,35767066,35774477,35791310	0.882353
Peyers_patch_male_adult_37_years	chr14	50159444	50159485	50159444	-	RAMPAGE_only	2	2	11	0.661281	2.921928	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50115117	50180654	STRG.111223.2	-	50115117,50116286,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50174453,50180571	50116179,50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50174552,50180654	0.909091
Peyers_patch_male_adult_37_years	chr21	39663495	39663521	39663507	+	RAMPAGE_only	4	8	21	1.262445	4.037401	chr21	39663475	39663621	SINE|Alu|AluJo	-	chr21	39642365	39673694	STRG.143230.1	+	39642365,39646391,39659752,39660559	39642476,39646622,39659912,39673694	0.904762
Peyers_patch_male_adult_37_years	chr19	44725180	44725200	44725180	-	High_confidence	25	25	73	4.388500	5.600516	chr19	44725104	44725160	SINE|MIR|MIR1_Amn	-	chr19	44631957	44725191	STRG.137172.1	-	44631957,44699083,44724836	44632619,44699177,44725191	0.945205
Peyers_patch_male_adult_37_years	chr3	170077655	170077696	170077687	+	High_confidence	8	9	22	1.322562	4.368523	chr3	170077411	170077864	LTR|ERVK|LTR22A	+	chr3	170077133	170084237	GPR160|ENST00000482710.1	+	170077133,170079773,170083904	170077416,170079897,170084237	0.681818
Peyers_patch_male_adult_37_years	chr17	47067498	47067518	47067498	-	High_confidence	43	45	193	11.602472	5.520492	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.896373
Peyers_patch_male_adult_37_years	chr1	156252925	156252931	156252930	-	High_confidence	7	9	19	1.142212	3.794653	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.789474
Peyers_patch_male_adult_37_years	chr20	63529352	63529363	63529352	-	RAMPAGE_only	5	5	17	1.021979	3.625000	chr20	63529149	63529330	LTR|ERV1|MER31-int	-	chr20	63528424	63535611	STRG.141936.9	-	63528424,63530077,63532525,63534151	63529723,63530927,63533704,63535611	0.882353
Peyers_patch_male_adult_37_years	chrX	51834360	51834361	51834360	+	RAMPAGE_only	8	8	8	0.480931	2.500000	chrX	51834144	51834533	LTR|ERVL|LTR52	+	chrX	51803058	51902354	MAGED1|NM_001005332.1	+	51803058,51894268,51895052,51896408,51897207,51897546,51897794,51898113,51898284,51898580,51900181,51901552,51902145	51803117,51894349,51895760,51897077,51897271,51897626,51897886,51898193,51898327,51898643,51900296,51901938,51902354	1.000000
Peyers_patch_male_adult_37_years	chr9	92536621	92536675	92536621	-	High_confidence	8	8	36	2.164192	4.725481	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.944444
Peyers_patch_male_adult_37_years	chr11	119046458	119046464	119046458	-	RAMPAGE_only	4	4	8	0.480931	2.750000	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119044311	119047820	STRG.96868.11	-	119044311,119045780,119046416,119046561,119047733	119045654,119045834,119046467,119046802,119047820	1.000000
Peyers_patch_male_adult_37_years	chr12	69886495	69886536	69886495	+	RAMPAGE_only	11	11	20	1.202329	3.446439	chr12	69886204	69886550	LTR|ERVL-MaLR|MLT1K	-	chr12	69875244	69958723	STRG.102430.2	+	69875244,69879194,69880200,69890970,69893763,69895370,69897155,69903643,69909968,69910820,69926570,69927684,69932512,69936112,69936282,69936452,69952112,69952798,69955362,69957821,69958248,69958444	69879095,69879453,69886970,69891166,69893840,69895481,69897246,69903844,69910077,69910930,69926734,69927748,69932598,69936187,69936335,69936632,69952175,69952886,69955437,69957942,69958323,69958723	1.000000
Peyers_patch_male_adult_37_years	chr11	85811011	85811047	85811011	-	High_confidence	4	4	8	0.480931	2.500000	chr11	85810837	85810962	SINE|MIR|MIR3	-	chr11	85694274	85811129	SYTL2|ENST00000316356.8	-	85694274,85696182,85697978,85700514,85704857,85707428,85709330,85711112,85714412,85718789,85720857,85727895,85733938,85736500,85737574,85745636,85748271,85757624,85810953	85695340,85696388,85698078,85700593,85705028,85707531,85709500,85711232,85714507,85718843,85720959,85727967,85734742,85736615,85737656,85745772,85748423,85758114,85811129	1.000000
Peyers_patch_male_adult_37_years	chr8	118050652	118050653	118050652	-	RAMPAGE_only	5	5	7	0.420815	2.807355	chr8	118050497	118050776	DNA|hAT-Charlie|MER58B	-	chr8	118002273	118055013	STRG.74278.1	-	118002273,118032172	118032099,118055013	1.000000
Peyers_patch_male_adult_37_years	chr2	156254904	156254948	156254935	-	High_confidence	7	7	38	2.284425	4.593400	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156254525	156254970	STRG.20693.1	-	156254525	156254970	0.526316
Peyers_patch_male_adult_37_years	chr2	240618900	240618923	240618911	+	High_confidence	4	4	14	0.841630	3.392747	chr2	240617462	240619377	LINE|L1|L1MC5	-	chr2	240618942	240631258	GPR35|ENST00000430267.2	+	240618942,240629948	240619031,240631258	0.500000
Peyers_patch_male_adult_37_years	chr8	116648828	116648865	116648847	-	RAMPAGE_only	6	6	23	1.382678	4.055958	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
Peyers_patch_male_adult_37_years	chr6	83137246	83137274	83137246	+	RAMPAGE_only	18	19	33	1.983842	4.202820	chr6	83137223	83137263	SINE|tRNA|LFSINE_Vert	+	chr6	83130213	83140731	STRG.55949.9	+	83130213,83134186,83135618,83137172,83139999,83140220	83132328,83134287,83135878,83139162,83140111,83140731	0.939394
Peyers_patch_male_adult_37_years	chr16	30445873	30445877	30445873	-	High_confidence	151	199	312	18.756328	6.591714	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.964744
Peyers_patch_male_adult_37_years	chr16	17483589	17483626	17483625	-	High_confidence	11	11	40	2.404657	5.071928	chr16	17483359	17483905	LTR|ERV1|MER50	+	chr16	17471054	17483604	STRG.121298.5	-	17471054,17483526	17472104,17483604	0.525000
Peyers_patch_male_adult_37_years	chr11	66351517	66351518	66351517	+	High_confidence	9	13	14	0.841630	2.777363	chr11	66350959	66351598	LINE|L1|L1MB4	-	chr11	66351516	66357192	STRG.93565.2	+	66351516,66353454	66352181,66357192	0.928571
Peyers_patch_male_adult_37_years	chr6	158774501	158774573	158774507	-	RAMPAGE_only	9	9	69	4.148034	4.831844	chr6	158774289	158774539	LINE|L2|L2a	+	chr6	158765747	158818227	STRG.60203.5	-	158765747,158767260,158769325,158769783,158770763,158771243,158783519,158784643,158785308,158787107,158789287,158818081	158767078,158767512,158769418,158769944,158770894,158776504,158783666,158784727,158785583,158787203,158789371,158818227	0.942029
Peyers_patch_male_adult_37_years	chr7	30568912	30568913	30568912	-	RAMPAGE_only	7	7	7	0.420815	2.807355	chr7	30568321	30569340	LTR|ERV1|MER4-int	+	chr7	30558095	30573088	GARS-DT|ENST00000584621.5	-	30558095,30561465,30563730,30568832,30572999	30559355,30562128,30563998,30568989,30573088	0.571429
Peyers_patch_male_adult_37_years	chr16	69996404	69996438	69996417	-	RAMPAGE_only	17	17	59	3.546870	5.227911	chr16	69996297	69996477	SINE|MIR|MIRb	+	chr16	69977605	70021930	STRG.123706.4	-	69977605,69978076,69978221,69982349,69982657,69986380,69990596,69996068,69996389,70010750,70011840,70014103,70018046,70021823	69978003,69978112,69978282,69982494,69982757,69986509,69993248,69996226,69996468,70010856,70011929,70014167,70018097,70021930	0.966102
Peyers_patch_male_adult_54_years	chr11	64242611	64242620	64242619	+	High_confidence	7	7	14	1.214284	3.093069	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.928571
Peyers_patch_male_adult_54_years	chr12	126772230	126772251	126772230	-	High_confidence	4	4	14	1.214284	2.692381	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126752340	126772262	LINC00944|ENST00000536517.1	-	126752340,126760931,126772078	126752451,126761057,126772262	0.857143
Peyers_patch_male_adult_54_years	chr8	75324289	75324294	75324289	-	High_confidence	5	5	12	1.040815	3.095795	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.750000
Peyers_patch_male_adult_54_years	chr9	22113612	22113613	22113612	+	High_confidence	15	18	21	1.821426	3.321104	chr9	22113591	22113733	SINE|MIR|MIRc	+	chr9	22113677	22121097	CDKN2B-AS1|ENST00000422420.1	+	22113677,22120199,22120503	22113799,22120410,22121097	0.571429
Peyers_patch_male_adult_54_years	chr2	172614369	172614370	172614369	-	RAMPAGE_only	12	12	14	1.214284	2.610577	chr2	172613734	172614832	LTR|ERV1|MER52C	+	chr2	172590788	172591148	STRG.20119.1	-	172590788	172591148	0.928571
Peyers_patch_male_adult_54_years	chr10	122576671	122576713	122576694	+	RAMPAGE_only	6	6	19	1.647957	3.366091	chr10	122576744	122576876	SINE|Alu|FLAM_C	+	chr10	122560664	122643736	DMBT1|ENST00000330163.8	+	122560664,122565966,122570161,122570889,122572313,122573714,122576398,122577810,122578717,122579577,122580865,122594495,122595302,122597024,122597973,122598773,122600063,122600990,122601796,122611217,122613167,122613973,122615276,122617227,122618016,122619307,122620252,122621056,122625276,122625932,122629839,122630287,122630960,122631854,122632860,122633190,122635990,122637127,122640039,122643121	122560831,122565996,122570209,122570937,122572361,122573762,122576722,122577840,122578759,122579901,122580895,122594528,122595626,122597054,122598012,122599097,122600093,122601023,122602120,122611247,122613200,122614297,122615306,122617260,122618340,122619337,122620291,122621380,122625303,122625965,122629993,122630490,122631281,122631875,122632890,122633341,122636199,122637312,122640449,122643736	1.000000
Peyers_patch_male_adult_54_years	chr3	37988098	37988118	37988117	+	High_confidence	4	4	9	0.780611	2.641604	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	1.000000
Peyers_patch_male_adult_54_years	chr20	37354745	37354771	37354770	+	RAMPAGE_only	10	10	27	2.341833	4.004344	chr20	37354787	37354938	SINE|MIR|MIR	+	chr20	37346153	37406050	SRC|ENST00000373578.6	+	37346153,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37346255,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37406050	0.592593
Peyers_patch_male_adult_54_years	chr3	195722495	195722528	195722495	+	High_confidence	19	19	50	4.336728	4.648367	chr3	195722358	195722503	SINE|MIR|MIRc	-	chr3	195722472	195725030	STRG.33328.39	+	195722472,195724679	195722818,195725030	0.940000
Peyers_patch_male_adult_54_years	chr2	240617389	240617390	240617389	+	RAMPAGE_only	13	13	19	1.647957	2.905765	chr2	240617180	240617426	LTR|ERVL-MaLR|MLT1F2	+	chr2	240618942	240631258	GPR35|ENST00000430267.2	+	240618942,240629948	240619031,240631258	0.842105
Peyers_patch_male_adult_54_years	chr11	59271932	59271970	59271932	-	High_confidence	8	14	32	2.775506	3.655336	chr11	59271744	59271907	SINE|MIR|MIRb	-	chr11	59267872	59271980	STRG.85457.3	-	59267872,59271513,59271895	59268843,59271608,59271980	0.593750
Peyers_patch_male_adult_54_years	chr6	158303374	158303375	158303374	-	High_confidence	784	801	853	73.984577	5.376378	chr6	158303244	158303618	LTR|ERVK|MER11A	-	chr6	158296371	158303366	STRG.56370.1	-	158296371	158303366	0.968347
Peyers_patch_male_adult_54_years	chr10	5023239	5023307	5023239	-	High_confidence	109	110	502	43.540747	7.047696	chr10	5023105	5023345	LTR|ERVL-MaLR|MLT1F2	-	chr10	4987399	5023313	STRG.77360.1	-	4987399,4991830,4995318,4995755,4998624,4999199,5000549,5001513,5003751,5007406,5010343,5023058	4990038,4991913,4995484,4995865,4998747,4999277,5000666,5001681,5006592,5007506,5010653,5023313	0.731076
Peyers_patch_male_adult_54_years	chr21	41426079	41426092	41426079	+	High_confidence	5	5	14	1.214284	3.039149	chr21	41426026	41426113	DNA|hAT-Charlie|MER5A	-	chr21	41426030	41459214	MX1|NM_002462.4	+	41426030,41427205,41427754,41430532,41432049,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41426263,41427304,41427866,41430608,41432175,41436029,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	0.714286
Peyers_patch_male_adult_54_years	chr19	38110048	38110049	38110048	+	High_confidence	4	4	7	0.607142	2.521641	chr19	38110026	38110080	LINE|L2|L2a	-	chr19	38110198	38119493	SIPA1L3|ENST00000594553.1	+	38110198,38119305	38110384,38119493	0.571429
Peyers_patch_male_adult_54_years	chr4	81154211	81154222	81154221	-	High_confidence	16	16	37	3.209179	3.613898	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.945946
Peyers_patch_male_adult_54_years	chr19	44725180	44725205	44725180	-	RAMPAGE_only	46	46	104	9.020394	5.853739	chr19	44725104	44725160	SINE|MIR|MIR1_Amn	-	chr19	44632198	44718631	AC243964.2|ENST00000590796.1	-	44632198,44699083,44715949,44718449	44632619,44699177,44716081,44718631	0.557692
Peyers_patch_male_adult_54_years	chr20	47339756	47339802	47339756	-	RAMPAGE_only	6	6	51	4.423462	4.660528	chr20	47339485	47339779	SINE|Alu|AluY	-	chr20	47210440	47342736	STRG.127069.7	-	47210440,47212641,47220257,47221313,47224316,47227202,47229725,47236325,47238895,47246007,47249286,47262287,47276313,47282101,47283570,47287228,47290186,47291795,47294665,47298728,47310055,47339708	47210897,47212725,47220324,47221474,47224556,47227281,47229806,47236516,47239138,47246517,47249439,47262428,47276795,47282217,47283648,47287284,47290274,47291888,47294779,47298872,47310204,47342736	0.725490
Peyers_patch_male_adult_54_years	chr8	62164815	62164816	62164815	-	High_confidence	6	6	8	0.693876	2.521641	chr8	62164702	62165238	LINE|L1|L1PB1	+	chr8	62164437	62164803	STRG.67113.1	-	62164437	62164803	0.625000
Peyers_patch_male_adult_54_years	chr1	197691962	197691969	197691968	-	RAMPAGE_only	12	15	27	2.341833	3.352136	chr1	197690937	197692135	LINE|L1|L1MB1	+	chr1	197504766	197658350	STRG.9980.3	-	197504766,197511727,197512870,197539963,197540958,197545921,197546732,197553021,197583151,197595207,197607072,197611930,197642710,197645689,197647054,197652234,197658299	197510972,197511944,197512953,197540071,197541015,197545990,197546773,197553112,197583253,197595333,197607174,197617759,197642821,197645743,197647114,197652315,197658350	0.962963
Peyers_patch_male_adult_54_years	chr6	85390188	85390208	85390207	-	High_confidence	16	21	51	4.423462	4.176175	chr6	85390133	85390460	LINE|L2|L2c	+	chr6	85387218	85390186	LINC02535|ENST00000455071.1	-	85387218,85390012	85389557,85390186	0.607843
Peyers_patch_male_adult_54_years	chr3	197299307	197299321	197299316	-	High_confidence	6	7	16	1.387753	3.327820	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.875000
Peyers_patch_male_adult_54_years	chr2	47369308	47369311	47369310	+	High_confidence	254	308	381	33.045866	5.406880	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369147	47387028	EPCAM|NM_002354.2	+	47369147,47373462,47373807,47375233,47377013,47378952,47379768,47385165,47386571	47369581,47373570,47374048,47375299,47377077,47379054,47379969,47385210,47387028	0.992126
Peyers_patch_male_adult_54_years	chr1	155637551	155637560	155637559	-	High_confidence	6	6	13	1.127549	3.026987	chr1	155637451	155637661	LTR|ERV1|LTR12F	-	chr1	155626763	155637880	STRG.7751.1	-	155626763,155634769,155637393	155627727,155634846,155637880	0.846154
Peyers_patch_male_adult_54_years	chr1	89272854	89272887	89272882	-	High_confidence	14	15	87	7.545906	5.556105	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.942529
Peyers_patch_male_adult_54_years	chr4	86453157	86453177	86453176	-	High_confidence	5	5	15	1.301018	3.056565	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86194379	86453174	MAPK10|ENST00000641782.1	-	86194379,86354529,86370713,86384099,86453029	86194407,86354644,86370867,86384236,86453174	0.933333
Peyers_patch_male_adult_54_years	chr10	65570512	65570529	65570521	+	High_confidence	7	9	31	2.688771	4.237291	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570874	65615757	LINC01515|ENST00000593568.1	+	65570874,65572934,65585484,65615635	65571579,65573056,65585567,65615757	0.677419
Peyers_patch_male_adult_54_years	chr2	28541804	28541807	28541806	+	RAMPAGE_only	8	12	18	1.561222	2.603976	chr2	28541850	28542149	SINE|Alu|AluSx1	+	chr2	28548499	28596063	PLB1|ENST00000436544.1	+	28548499,28548859,28550009,28552927,28563040,28565279,28566795,28573196,28578106,28579626,28582067,28582404,28585760,28589449,28589674,28590004,28591132,28591699,28592660,28593680,28593971	28548565,28548931,28550084,28552991,28563099,28565353,28566839,28573305,28578158,28579707,28582133,28582505,28585842,28589554,28589770,28590076,28591171,28591760,28592719,28593754,28596063	0.944444
Peyers_patch_male_adult_54_years	chr19	29715994	29715995	29715994	-	High_confidence	10	10	13	1.127549	2.968919	chr19	29715796	29716076	SINE|Alu|AluJr	+	chr19	29698885	29715789	C19orf12|NM_001256047.1	-	29698885,29708253,29715562	29702977,29708423,29715789	0.846154
Peyers_patch_male_adult_54_years	chr17	59619894	59619923	59619894	+	High_confidence	717	857	2461	213.453744	5.140163	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.971963
Peyers_patch_male_adult_54_years	chr1	203429182	203429251	203429250	-	High_confidence	192	210	435	37.729532	6.924596	chr1	203429152	203429582	LTR|ERVK|LTR22A	-	chr1	203421597	203429272	STRG.10344.2	-	203421597	203429272	0.940230
Peyers_patch_male_adult_54_years	chr2	149420219	149420254	149420244	-	High_confidence	7	8	24	2.081629	3.688722	chr2	149420222	149420357	SINE|MIR|MIRb	-	chr2	149419490	149419930	STRG.18793.1	-	149419490	149419930	0.875000
Peyers_patch_male_adult_54_years	chr12	109069856	109069859	109069856	+	RAMPAGE_only	9	9	17	1.474487	3.146286	chr12	109069527	109070326	LINE|L2|L2a	-	chr12	109067593	109081628	USP30|ENST00000467307.1	+	109067593,109071611,109072304,109073437,109081333	109067627,109071710,109072350,109073532,109081628	0.941176
Peyers_patch_male_adult_54_years	chr11	116821380	116821865	116821837	-	RAMPAGE_only	811	834	6314	547.641991	8.043247	chr11	116821645	116821838	LTR|ERVL|MLT2F	+	chr11	116820701	116823295	APOA4|NM_000482.3	-	116820701,116822658,116823142	116821881,116822785,116823295	0.998416
Peyers_patch_male_adult_54_years	chr12	67718666	67718667	67718666	-	RAMPAGE_only	15	15	15	1.301018	2.872906	chr12	67718353	67719796	LTR|ERV1|LTR12C	-	chr12	67709046	67729475	LINC02421|ENST00000542219.1	-	67709046,67715321,67718342,67722378,67729395	67710685,67716203,67718541,67722713,67729475	0.933333
Peyers_patch_male_adult_54_years	chr12	129379662	129379668	129379662	+	High_confidence	3	3	8	0.693876	2.500000	chr12	129379587	129380157	DNA|TcMar-Tc2|Kanga1a	+	chr12	129379762	129383508	STRG.95765.1	+	129379762,129383090	129379847,129383508	0.875000
Peyers_patch_male_adult_54_years	chr14	24423125	24423185	24423184	+	High_confidence	89	91	464	40.244834	5.932476	chr14	24422287	24423820	LINE|L2|L2b	-	chr14	24423095	24437425	STRG.100011.4	+	24423095,24430713,24431462,24432721,24432935,24436071,24436387,24437035	24423476,24430931,24432610,24432852,24433032,24436179,24436489,24437425	0.946121
Peyers_patch_male_adult_54_years	chr12	72432458	72432482	72432481	+	High_confidence	44	78	169	14.658140	6.009428	chr12	72432166	72432618	LTR|ERVK|LTR22A	-	chr12	72432459	72670834	STRG.93740.1	+	72432459,72469757,72473066,72499497,72542290,72562164,72562852,72568567,72575254,72575486,72618890,72621107,72621643,72652321,72653015,72656926,72663051	72432566,72469912,72473180,72499635,72542356,72562230,72563040,72568656,72575388,72575542,72619038,72621205,72621751,72652489,72653156,72657008,72670834	0.828402
Peyers_patch_male_adult_54_years	chr9	22113544	22113547	22113544	+	High_confidence	169	200	320	27.755058	6.506082	chr9	22113591	22113733	SINE|MIR|MIRc	+	chr9	22113677	22120713	STRG.72546.1	+	22113677,22118643,22120199,22120503	22113799,22118767,22120410,22120713	0.712500
Peyers_patch_male_adult_54_years	chr10	102449836	102449839	102449836	+	High_confidence	7	7	17	1.474487	3.337175	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.823529
Peyers_patch_male_adult_54_years	chr4	56272348	56272371	56272348	+	High_confidence	3	3	8	0.693876	2.500000	chr4	56272344	56272407	LINE|CR1|L3	+	chr4	56272403	56328092	KIAA1211|ENST00000541073.5	+	56272403,56298213,56301225,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56272492,56298349,56301247,56307699,56310734,56313379,56316689,56323567,56324266,56328092	0.500000
Peyers_patch_male_adult_54_years	chr7	134432444	134432500	134432444	-	High_confidence	4	4	15	1.301018	3.106891	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.933333
Peyers_patch_male_adult_54_years	chr3	11225963	11225986	11225963	+	High_confidence	7	7	41	3.556117	4.589021	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.804878
Peyers_patch_male_adult_54_years	chrX	103718228	103718277	103718276	-	High_confidence	26	31	94	8.153048	5.353590	chrX	103718252	103718364	LINE|L2|L2a	+	chrX	103703897	103718271	STRG.134610.1	-	103703897,103713519,103718144	103707514,103713669,103718271	0.776596
Peyers_patch_male_adult_54_years	chr7	15668184	15668229	15668217	+	High_confidence	10	17	35	3.035709	3.995715	chr7	15668111	15668470	DNA|TcMar-Tigger|Tigger2a	+	chr7	15667946	15681980	AC005550.2|ENST00000451240.1	+	15667946,15676019,15677462,15678913	15668296,15676160,15677647,15681980	0.857143
Peyers_patch_male_adult_54_years	chr2	91766678	91766704	91766703	+	High_confidence	29	29	121	10.494881	5.244529	chr2	91766515	91766814	LINE|L2|L2	-	chr2	91766688	91788890	STRG.16638.1	+	91766688,91772820,91774828,91775113,91780409	91767439,91772890,91774897,91776107,91788890	0.975207
Peyers_patch_male_adult_54_years	chr11	73530053	73530054	73530053	-	RAMPAGE_only	14	14	19	1.647957	3.281036	chr11	73529787	73530086	SINE|Alu|AluSx1	-	chr11	73405982	73598183	FAM168A|ENST00000356467.4	-	73405982,73407512,73409486,73411393,73419873,73430689,73468404,73597922	73406744,73407643,73409661,73411536,73419999,73430770,73468492,73598183	0.578947
Peyers_patch_male_adult_54_years	chr19	44744930	44744996	44744940	+	High_confidence	35	39	132	11.448961	5.711915	chr19	44744681	44744974	SINE|Alu|AluJo	+	chr19	44744943	44752078	STRG.123694.4	+	44744943,44746609,44748694,44751226	44745137,44748128,44749046,44752078	0.659091
Peyers_patch_male_adult_54_years	chr9	123652014	123652015	123652014	-	RAMPAGE_only	11	11	12	1.040815	2.913977	chr9	123651992	123652144	DNA|hAT-Ac|OldhAT1	-	chr9	123401809	123676791	DENND1A|ENST00000394215.6	-	123401809,123403401,123440359,123450692,123452275,123454738,123457347,123457792,123557569,123583168,123609435,123630375,123652012,123667025,123671290,123676719	123401912,123403490,123440491,123450749,123452347,123454779,123457435,123457897,123557695,123583270,123609481,123630476,123652123,123667079,123671371,123676791	0.666667
Peyers_patch_male_adult_54_years	chr7	93219134	93219155	93219154	-	High_confidence	3	3	8	0.693876	2.521641	chr7	93219071	93219143	LINE|CR1|L3	-	chr7	93188585	93219545	HEPACAM2|ENST00000440868.5	-	93188585,93192253,93195827,93197240,93197484,93208579,93215400,93219100	93189270,93192363,93195901,93197278,93197610,93208876,93215685,93219545	0.875000
Peyers_patch_male_adult_54_years	chrX	22086190	22086239	22086190	+	High_confidence	6	6	23	1.994895	3.849224	chrX	22086029	22086733	LINE|L1|L1M3f	-	chrX	22086554	22099363	STRG.131753.1	+	22086554,22090428,22093982,22096954,22099005	22086628,22090497,22094099,22097038,22099363	0.956522
Peyers_patch_male_adult_54_years	chr4	2036471	2036575	2036550	+	High_confidence	95	95	618	53.601956	5.111822	chr4	2036585	2036842	LTR|ERVL|ERVL-E-int	+	chr4	2036502	2040949	STRG.33732.3	+	2036502,2039996,2040863	2036661,2040092,2040949	0.966019
Peyers_patch_male_adult_54_years	chr6	158303276	158303304	158303280	-	High_confidence	7	7	49	4.249993	3.837704	chr6	158302207	158303244	LTR|ERVK|HERVK11-int	-	chr6	158296371	158303366	STRG.56370.1	-	158296371	158303366	1.000000
Peyers_patch_male_adult_54_years	chr15	75347012	75347043	75347042	+	High_confidence	16	16	51	4.423462	4.570603	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.725490
Peyers_patch_male_adult_54_years	chr5	9409594	9409615	9409614	-	RAMPAGE_only	20	23	71	6.158154	5.060978	chr5	9409587	9409722	SINE|MIR|MIR1_Amn	+	chr5	9202123	9380201	SEMA5A|ENST00000513968.4	-	9202123,9224673,9226868,9237827,9318371,9337712,9379822,9380106	9202240,9224887,9226967,9237890,9318417,9337812,9380023,9380201	0.591549
Peyers_patch_male_adult_54_years	chr16	4355592	4355593	4355592	-	High_confidence	17	19	19	1.647957	3.721612	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.736842
Peyers_patch_male_adult_54_years	chr22	41471802	41471834	41471833	+	RAMPAGE_only	7	7	21	1.821426	3.260828	chr22	41471830	41472060	SINE|MIR|MIR	+	chr22	41469159	41511966	ACO2|ENST00000471094.1	+	41469159,41507790,41511875	41469508,41508049,41511966	0.666667
Peyers_patch_male_adult_54_years	chr17	59620080	59620116	59620080	+	High_confidence	4	4	12	1.040815	2.751629	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	1.000000
Peyers_patch_male_adult_54_years	chr3	189121283	189121302	189121283	+	RAMPAGE_only	3	3	11	0.954080	3.121928	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.727273
Peyers_patch_male_adult_54_years	chr18	46087008	46087019	46087008	-	High_confidence	2	2	8	0.693876	2.500000	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	1.000000
Peyers_patch_male_adult_54_years	chr1	23417917	23418013	23417917	-	RAMPAGE_only	6	6	44	3.816320	4.618078	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23408559	23419236	TCEA3|ENST00000374602.2	-	23408559,23417248,23417903,23419076	23408726,23417390,23418009,23419236	0.568182
Peyers_patch_male_adult_54_years	chr22	46171512	46171560	46171512	+	High_confidence	7	7	25	2.168364	3.749275	chr22	46171297	46171902	LINE|L2|L2a	-	chr22	46171331	46235403	STRG.130727.2	+	46171331,46176752,46188722,46198341,46215172,46218262,46219811,46231791,46235132	46176144,46176836,46188822,46198591,46215333,46218401,46220014,46232239,46235403	0.800000
Peyers_patch_male_adult_54_years	chr9	72253304	72253310	72253304	+	RAMPAGE_only	11	11	18	1.561222	2.705229	chr9	72253176	72253633	LTR|ERVL|MER70B	+	chr9	72149452	72253560	GDA|ENST00000376986.5	+	72149452,72195503,72202570,72210686,72213885,72219478,72225676,72227942,72231113,72241151,72245147,72247405,72248271,72250749,72253237	72149682,72195588,72202742,72210774,72213991,72219506,72225784,72228040,72231181,72241298,72245278,72247433,72248338,72250841,72253560	0.666667
Peyers_patch_male_adult_54_years	chr1	52708380	52708381	52708380	-	RAMPAGE_only	20	21	29	2.515302	3.923252	chr1	52708320	52708479	LINE|L2|L2c	+	chr1	52684450	52698366	COA7|ENST00000371538.4	-	52684450,52692726,52698220	52688168,52692867,52698366	0.724138
Peyers_patch_male_adult_54_years	chr17	27551959	27551987	27551966	-	High_confidence	67	67	224	19.428541	6.124851	chr17	27551728	27552347	LINE|L2|L2a	+	chr17	27541289	27552000	STRG.114283.1	-	27541289,27551886	27543973,27552000	0.575893
Peyers_patch_male_adult_54_years	chr2	231070267	231070282	231070267	+	RAMPAGE_only	3	4	9	0.780611	2.500000	chr2	231070224	231070359	SINE|MIR|MIRc	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.888889
Peyers_patch_male_adult_54_years	chr17	43872285	43872286	43872285	+	High_confidence	5	5	8	0.693876	2.521641	chr17	43871996	43872421	LTR|ERVK|LTR3B_	+	chr17	43872290	43879460	STRG.115451.1	+	43872290,43879331	43872622,43879460	0.625000
Peyers_patch_male_adult_54_years	chr2	113704173	113704174	113704173	-	High_confidence	24	24	24	2.081629	4.053509	chr2	113703868	113704969	LTR|ERV1|LTR12E	-	chr2	113677701	113704078	AC017074.1|ENST00000424612.1	-	113677701,113688160,113703696	113677783,113688257,113704078	0.875000
Peyers_patch_male_adult_54_years	chrX	15602157	15602158	15602157	-	High_confidence	50	50	61	5.290808	3.776891	chrX	15602053	15602111	LINE|CR1|L3	-	chrX	15594886	15602148	ACE2|ENST00000484756.1	-	15594886,15600725,15601955	15595003,15601014,15602148	0.901639
Peyers_patch_male_adult_54_years	chr2	159428313	159428357	159428356	-	RAMPAGE_only	6	6	13	1.127549	2.661226	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.769231
Peyers_patch_male_adult_54_years	chr16	81664294	81664344	81664343	+	RAMPAGE_only	3	3	11	0.954080	2.550341	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	1.000000
Peyers_patch_male_adult_54_years	chr7	150323671	150323751	150323750	-	High_confidence	62	65	255	22.117312	5.529444	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	0.894118
Peyers_patch_male_adult_54_years	chr1	30039409	30039424	30039423	-	RAMPAGE_only	4	4	13	1.127549	2.918296	chr1	30039248	30039696	LTR|ERVK|LTR22A	-	chr1	30013951	30037612	LINC01648|ENST00000445180.2	-	30013951,30015243,30016719,30025024,30029289,30036771,30037497	30014509,30015295,30016921,30025183,30029490,30037003,30037612	0.769231
Peyers_patch_male_adult_54_years	chr12	57050719	57050720	57050719	-	High_confidence	161	196	205	17.780584	5.872132	chr12	57050705	57050920	SINE|MIR|MIRc	-	chr12	57028516	57050765	MYO1A|NM_001256041.1	-	57028516,57029131,57029434,57029739,57030209,57031039,57036306,57036771,57036941,57037547,57037868,57038411,57038808,57039211,57041183,57041431,57043071,57043239,57043855,57044105,57046551,57046862,57047060,57047302,57047626,57047988,57048209,57049886,57050717	57028881,57029259,57029587,57029872,57030316,57031174,57036381,57036840,57037091,57037641,57038069,57038638,57039009,57039274,57041288,57041497,57043158,57043358,57044003,57044209,57046650,57046926,57047107,57047407,57047721,57048104,57048343,57050106,57050765	0.882927
Peyers_patch_male_adult_54_years	chr2	230925224	230925242	230925241	-	High_confidence	8	8	31	2.688771	4.082598	chr2	230925193	230925329	SINE|MIR|MIR3	+	chr2	230907317	230925226	GPR55|ENST00000444078.5	-	230907317,230909621,230925167	230908310,230911096,230925226	0.967742
Peyers_patch_male_adult_54_years	chr8	143281669	143281687	143281686	-	High_confidence	16	16	43	3.729586	3.994083	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.697674
Peyers_patch_male_adult_54_years	chr11	121586014	121586032	121586014	+	RAMPAGE_only	3	3	12	1.040815	2.845351	chr11	121585554	121586209	LINE|L1|L1ME4b	-	chr11	121576837	121629678	SORL1|ENST00000534286.5	+	121576837,121577280,121583457,121586221,121588019,121589258,121590039,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121577038,121577400,121583583,121586329,121588151,121589390,121590174,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121629678	0.750000
Peyers_patch_male_adult_54_years	chr1	149229343	149229368	149229367	-	RAMPAGE_only	21	22	32	2.775506	3.753928	chr1	149229335	149229457	SINE|MIR|MIR3	+	chr1	149197991	149321732	AC245297.1|ENST00000313342.8	-	149197991,149198360,149201013,149240376,149261639,149266968,149321499	149198171,149198484,149201090,149240487,149261791,149267024,149321732	0.531250
Peyers_patch_male_adult_54_years	chr4	71602782	71602792	71602791	+	High_confidence	9	9	15	1.301018	3.189898	chr4	71602665	71603204	LTR|ERVL|MLT2B3	-	chr4	71602536	71603160	STRG.36385.1	+	71602536	71603160	0.800000
Peyers_patch_male_adult_54_years	chr20	37344707	37344718	37344712	+	High_confidence	65	106	199	17.260177	6.487548	chr20	37344715	37344779	SINE|MIR|MIRc	+	chr20	37344684	37405432	SRC|NM_005417.4	+	37344684,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.507538
Peyers_patch_male_adult_54_years	chr6	12261016	12261057	12261056	+	High_confidence	17	17	32	2.775506	4.074699	chr6	12260893	12261158	LINE|L1|L1M5	+	chr6	12261395	12262141	STRG.49247.1	+	12261395	12262141	0.687500
Peyers_patch_male_adult_54_years	chr6	77369144	77369167	77369165	-	High_confidence	23	43	109	9.454067	5.304656	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77316653	77369155	STRG.52026.1	-	77316653,77350621,77368885	77316704,77350734,77369155	0.733945
Peyers_patch_male_adult_54_years	chr13	60409805	60409806	60409805	+	High_confidence	5	5	7	0.607142	2.521641	chr13	60408313	60409885	LTR|ERVL-MaLR|THE1A-int	+	chr13	60409829	60411128	STRG.98344.1	+	60409829	60411128	0.857143
Peyers_patch_male_adult_54_years	chr8	61578141	61578142	61578141	+	High_confidence	942	949	968	83.959051	6.330864	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.977273
Peyers_patch_male_adult_54_years	chr11	119110890	119110947	119110890	+	High_confidence	9	9	35	3.035709	3.976450	chr11	119110843	119110902	LINE|CR1|L3b	+	chr11	119111056	119117121	C2CD2L|ENST00000528586.2	+	119111056,119111262,119111520,119112327,119112481,119112699,119113610,119113854,119114079,119116024	119111168,119111374,119111629,119112392,119112609,119112874,119113712,119113988,119114365,119117121	0.685714
Peyers_patch_male_adult_54_years	chr18	39800271	39800314	39800304	-	High_confidence	8	8	26	2.255098	4.023465	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.576923
Peyers_patch_male_adult_54_years	chr14	77736978	77737012	77736978	-	High_confidence	9	10	16	1.387753	3.030639	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.937500
Peyers_patch_male_adult_54_years	chr11	65367411	65367438	65367437	+	High_confidence	29	31	50	4.336728	4.405188	chr11	65367362	65367667	SINE|Alu|AluY	-	chr11	65367437	65375299	AP000944.1|ENST00000533886.1	+	65367437,65367926,65375230	65367815,65368043,65375299	0.900000
Peyers_patch_male_adult_54_years	chr12	12927733	12927756	12927733	+	High_confidence	13	13	35	3.035709	4.343289	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.542857
Peyers_patch_male_adult_54_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	14	14	16	1.387753	2.827820	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86467940	86492712	STRG.16476.4	+	86467940,86474775,86477876,86478169,86478607,86481929,86482457,86483986,86484941,86485728,86489317,86489519,86490880,86491140,86492038	86470408,86474990,86478029,86478265,86480362,86482102,86482694,86484158,86485029,86485859,86489437,86489659,86491057,86491275,86492712	1.000000
Peyers_patch_male_adult_54_years	chr10	46269605	46269624	46269623	-	High_confidence	5	6	14	1.214284	2.815072	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.857143
Peyers_patch_male_adult_54_years	chr9	128684466	128684493	128684466	-	High_confidence	6	6	30	2.602037	4.164735	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683306	128684468	STRG.76709.1	-	128683306	128684468	0.900000
Peyers_patch_male_adult_54_years	chr9	92536612	92536675	92536625	-	High_confidence	31	34	107	9.280598	5.163261	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536646	STRG.74639.2	-	92517687,92522574,92525192,92535932,92536600	92517875,92522893,92525310,92535982,92536646	0.971963
Peyers_patch_male_adult_54_years	chr20	23386698	23386743	23386698	-	RAMPAGE_only	10	14	26	2.255098	3.613337	chr20	23386573	23386920	LTR|ERVL|MER77	+	chr20	23374410	23390105	STRG.126163.2	-	23374410,23379444,23379866,23381212,23389945	23377486,23379495,23379935,23381317,23390105	0.500000
Peyers_patch_male_adult_54_years	chr12	51403178	51403192	51403178	+	High_confidence	6	6	12	1.040815	2.625815	chr12	51403184	51403380	LTR|Gypsy|MamGyp-int	+	chr12	51403162	51497864	SLC4A8|ENST00000604314.5	+	51403162,51440707,51450875,51452123,51453538,51457350,51458558,51459950,51461203,51462309,51463613,51469613,51470391,51471286,51474341,51475044,51485786,51488698,51489699,51493703,51494944,51496986	51403289,51440789,51451022,51452259,51453699,51457539,51458650,51460108,51461291,51462456,51463714,51469788,51470525,51471532,51474447,51475206,51485900,51488860,51489951,51493772,51495118,51497864	0.666667
Peyers_patch_male_adult_54_years	chr14	22821371	22821372	22821371	-	High_confidence	9	9	9	0.780611	2.725481	chr14	22821278	22821399	LINE|L2|L2a	+	chr14	22813054	22821488	STRG.99833.10	-	22813054,22815319,22821121	22813440,22815451,22821488	0.888889
Peyers_patch_male_adult_54_years	chr10	104053352	104053370	104053352	-	RAMPAGE_only	2	3	8	0.693876	3.000000	chr10	104053217	104053878	LINE|L2|L2a	+	chr10	104031287	104055969	STRG.82515.3	-	104031287,104032673,104032905,104033237,104033944,104034620,104035262,104035473,104036491,104037044,104037635,104038405,104039070,104039444,104039607,104039972,104040350,104041302,104041484,104042419,104043500,104043824,104045757,104046746,104047738,104048068,104049408,104050088,104050620,104050847,104051480,104052154,104053030,104053919,104054091,104054980,104055371,104055781	104032290,104032754,104032968,104033375,104034334,104034767,104035373,104035563,104036632,104037113,104037773,104038528,104039121,104039519,104039640,104039999,104040410,104041344,104041538,104042455,104043581,104043860,104045793,104046773,104047810,104048104,104049471,104050124,104050656,104050901,104051516,104052217,104053135,104053982,104054118,104055007,104055401,104055969	0.625000
Peyers_patch_male_adult_54_years	chr22	24603351	24603375	24603374	+	High_confidence	6	6	13	1.127549	3.026987	chr22	24603350	24603472	SINE|MIR|MIR3	+	chr22	24603234	24615071	GGT1|ENST00000430289.5	+	24603234,24607953,24609964,24610249,24610454,24611074,24614775,24615040	24603527,24608023,24610033,24610336,24610531,24611245,24614906,24615071	0.615385
Peyers_patch_male_adult_54_years	chr3	185959724	185959748	185959747	+	High_confidence	8	14	27	2.341833	3.510086	chr3	185959492	185959826	SINE|Alu|AluSq2	+	chr3	185959961	185975198	NMRAL2P|ENST00000422108.5	+	185959961,185968478,185971614,185975165	185960078,185968649,185971864,185975198	0.555556
Peyers_patch_male_adult_54_years	chrX	48683362	48683363	48683362	+	High_confidence	9	12	12	1.040815	3.251629	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
Peyers_patch_male_adult_54_years	chr19	7642294	7642328	7642294	+	High_confidence	7	7	28	2.428568	3.824863	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.892857
Peyers_patch_male_adult_54_years	chrX	118419249	118419281	118419280	+	RAMPAGE_only	7	7	20	1.734691	3.408695	chrX	118415803	118419707	LINE|L1|L1PB1	-	chrX	118392747	118449336	WDR44|ENST00000371848.3	+	118392747,118394054,118395248,118396969,118398386,118404337,118406874,118409488,118410894,118432780,118436701,118441367,118442243,118442564,118443559,118444359,118447059,118448892	118393271,118394185,118395344,118397106,118398470,118404444,118407026,118409627,118410959,118432894,118436824,118441559,118442345,118442680,118443687,118444494,118447114,118449336	0.900000
Peyers_patch_male_adult_54_years	chr3	142684004	142684101	142684055	+	RAMPAGE_only	8	9	37	3.209179	4.384795	chr3	142683987	142684094	LINE|RTE-BovB|MamRTE1	+	chr3	142656896	142713664	PLS1|NM_001172312.1	+	142656896,142664201,142669389,142670992,142676156,142678031,142684005,142684252,142686283,142689617,142694468,142697952,142703867,142704462,142711500,142711871	142657180,142664307,142669553,142671122,142676289,142678113,142684171,142684395,142686376,142689813,142694547,142698067,142704001,142704586,142711625,142713664	0.972973
Peyers_patch_male_adult_54_years	chr11	624247	624271	624270	-	High_confidence	25	26	49	4.249993	4.711349	chr11	624236	624405	SINE|MIR|MIR1_Amn	-	chr11	617255	624932	CDHR5|ENST00000531177.5	-	617255,617953,618598,619305,619473,619680,620066,620295,621079,621344,621561,621811,624212,624556,624817	617770,618111,619180,619390,619587,619881,620164,620386,621250,621455,621663,621904,624416,624732,624932	0.877551
Peyers_patch_male_adult_54_years	chr12	91179462	91179526	91179462	-	High_confidence	116	122	577	50.045839	6.341844	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.766031
Peyers_patch_male_adult_54_years	chr16	2759931	2760018	2760017	+	High_confidence	7	10	31	2.688771	3.561898	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	1.000000
Peyers_patch_male_adult_54_years	chr15	40650121	40650152	40650151	+	High_confidence	18	18	91	7.892845	5.083237	chr15	40650091	40650181	LINE|L2|L2c	+	chr15	40650161	40664342	STRG.105006.1	+	40650161,40650543,40651470,40652004,40654908,40657041,40657354,40659338,40662073	40650378,40650583,40651572,40652105,40654977,40657151,40657473,40659461,40664342	0.967033
Peyers_patch_male_adult_54_years	chr10	68307082	68307115	68307107	-	High_confidence	31	31	83	7.198968	4.249334	chr10	68307029	68307329	SINE|Alu|AluSx1	-	chr10	68287026	68306879	PBLD|ENST00000277795.8	-	68287026,68292009,68292128,68296885,68306760	68289019,68292039,68292238,68296985,68306879	0.807229
Peyers_patch_male_adult_54_years	chr4	18418420	18418448	18418420	+	High_confidence	2	2	7	0.607142	2.521641	chr4	18417470	18418903	LTR|ERV1|LTR12C	-	chr4	18418148	18738391	STRG.34599.1	+	18418148,18521141,18738227	18418962,18521223,18738391	0.857143
Peyers_patch_male_adult_54_years	chr2	8919232	8919251	8919232	-	RAMPAGE_only	6	6	12	1.040815	2.855389	chr2	8918762	8919757	LINE|L1|L1MB7	-	chr2	8873193	8958590	MBOAT2|ENST00000474341.5	-	8873193,8876986,8882510,8888017,8908620,8943186,8958496	8873300,8877213,8882565,8888073,8908716,8943264,8958590	0.666667
Peyers_patch_male_adult_54_years	chr15	76576996	76577028	76576996	-	High_confidence	2	3	9	0.780611	2.947703	chr15	76576480	76577164	LINE|L1|L1MA3	+	chr15	76471261	76576985	SCAPER|ENST00000569784.1	-	76471261,76504858,76567269,76574157,76576858	76471335,76504974,76567405,76574284,76576985	0.777778
Peyers_patch_male_adult_54_years	chr2	238300105	238300125	238300124	-	High_confidence	7	7	19	1.647957	2.969389	chr2	238299957	238300152	LTR|ERVL|ERV3-16A3_I-int	+	chr2	238295391	238300620	AC012485.2|ENST00000437372.2	-	238295391,238298639,238299801,238300511	238295740,238298776,238300188,238300620	0.947368
Peyers_patch_male_adult_54_years	chr11	1092854	1093007	1092854	+	RAMPAGE_only	47	53	263	22.811188	6.451853	chr11	1092816	1092887	DNA|hAT-Ac|OldhAT1	-	chr11	1074874	1110511	MUC2|ENST00000361558.7	+	1074874,1075650,1077453,1077951,1078122,1078311,1081661,1082284,1082480,1082877,1083076,1083424,1083652,1084290,1084591,1085067,1085553,1085744,1086245,1086734,1087754,1087946,1088257,1089508,1089941,1090763,1092398,1092843,1093533,1094141,1100756,1101222,1101755,1102416,1103273,1103780,1104732,1105302,1105510,1105855,1107085,1107649,1108003,1108172,1108547,1109280,1109646,1109900,1110135	1074977,1075921,1077568,1078042,1078232,1078522,1081787,1082402,1082619,1082988,1083146,1083562,1083817,1084385,1084718,1085323,1085606,1085845,1086397,1086873,1087865,1088126,1088497,1089665,1090073,1090911,1092442,1093047,1093551,1100025,1100954,1101446,1101930,1102664,1103457,1104009,1104911,1105372,1105611,1105887,1107263,1107754,1108044,1108295,1108646,1109409,1109686,1110027,1110511	0.988593
Peyers_patch_male_adult_54_years	chr3	155085060	155085078	155085077	+	High_confidence	7	7	12	1.040815	3.084963	chr3	155085055	155085093	LINE|L2|L2	-	chr3	155084167	155183729	MME|ENST00000615825.1	+	155084167,155085058,155114993,155116478,155116663,155116867,155118745,155138101,155140190,155141990,155142236,155143442,155144358,155147143,155148549,155160389,155166901,155168491,155168731,155172116,155172535,155180359	155084327,155085094,155115155,155116559,155116759,155116986,155118811,155138236,155140292,155142127,155142330,155143571,155144457,155147224,155148653,155160448,155167021,155168625,155168797,155172212,155172612,155183729	1.000000
Peyers_patch_male_adult_54_years	chr11	71745904	71745938	71745914	+	High_confidence	11	11	41	3.556117	4.417812	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.829268
Peyers_patch_male_adult_54_years	chr19	15829094	15829095	15829094	+	High_confidence	35	38	40	3.469382	3.970840	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	0.775000
Peyers_patch_male_adult_54_years	chr17	39494625	39494626	39494625	+	RAMPAGE_only	15	15	15	1.301018	2.682589	chr17	39494618	39494687	DNA|Merlin|Merlin1_HS	-	chr17	39462038	39535146	CDK12|ENST00000447079.4	+	39462038,39470878,39490556,39492750,39494523,39501249,39509704,39511528,39515730,39517439,39519955,39524673,39525863,39530603	39463117,39471763,39490733,39492890,39494694,39501439,39509761,39511630,39515808,39517556,39520087,39524885,39526316,39535146	0.866667
Peyers_patch_male_adult_54_years	chr1	46181632	46181644	46181632	+	RAMPAGE_only	6	6	19	1.647957	3.366091	chr1	46181615	46181833	LINE|L2|L2b	-	chr1	46180411	46185742	STRG.3033.1	+	46180411,46181099,46184190,46184593,46184784,46184959,46185224,46185485	46180658,46181164,46184397,46184668,46184883,46185115,46185308,46185742	0.526316
Peyers_patch_male_adult_54_years	chr2	48395661	48395704	48395703	+	High_confidence	4	6	19	1.647957	3.681881	chr2	48395520	48395932	LINE|L2|L2a	-	chr2	48395699	48397176	STRG.15049.1	+	48395699	48397176	0.894737
Peyers_patch_male_adult_54_years	chr13	30376940	30376971	30376940	-	High_confidence	5	5	15	1.301018	2.692381	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30367489	30376959	STRG.96454.1	-	30367489,30372284,30375466,30376826	30367717,30372374,30375776,30376959	0.933333
Peyers_patch_male_adult_54_years	chr17	29643377	29643378	29643377	-	RAMPAGE_only	11	13	15	1.301018	2.866248	chr17	29643278	29643403	LTR|ERVL-MaLR|MLT1L	+	chr17	29630799	29761417	SSH2|ENST00000649863.1	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677738,29684684,29695523,29703062,29761417	0.866667
Peyers_patch_male_adult_54_years	chr8	102929989	102930020	102929989	+	High_confidence	4	4	13	1.127549	3.085055	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.769231
Peyers_patch_male_adult_54_years	chr7	31526879	31526926	31526906	-	High_confidence	18	22	47	4.076524	3.831207	chr7	31526657	31527161	LINE|L2|L2	+	chr7	31526538	31526878	STRG.58609.1	-	31526538	31526878	0.744681
Peyers_patch_male_adult_54_years	chr17	1115377	1115412	1115377	-	High_confidence	4	7	22	1.908160	3.332095	chr17	1115307	1115433	LINE|L2|L2b	+	chr17	1072732	1115436	ABR|ENST00000570441.5	-	1072732,1073624,1079329,1083519,1091664,1100636,1115275	1072754,1073677,1079390,1083627,1091850,1100735,1115436	0.772727
Peyers_patch_male_adult_54_years	chr2	237579517	237579573	237579539	-	High_confidence	6	6	22	1.908160	3.558519	chr2	237579285	237579685	LTR|ERVL-MaLR|MLT1C	-	chr2	237574325	237579570	RAB17|ENST00000477149.5	-	237574325,237575386,237577256	237575128,237575480,237579570	0.954545
Peyers_patch_male_adult_54_years	chr1	200298329	200298403	200298329	-	High_confidence	79	79	272	23.591799	5.839028	chr1	200297863	200298573	LINE|L2|L2c	+	chr1	200289903	200298329	STRG.10116.1	-	200289903,200297840	200294572,200298329	0.974265
Peyers_patch_male_adult_54_years	chr21	39642381	39642396	39642381	+	High_confidence	272	273	853	73.984577	7.345027	chr21	39642371	39642477	LINE|L2|L2b	-	chr21	39642304	39662888	STRG.128687.3	+	39642304,39644222,39659752,39660559	39642476,39646622,39659912,39662888	0.865182
Peyers_patch_male_adult_54_years	chr22	46578331	46578348	46578331	+	RAMPAGE_only	9	9	18	1.561222	3.191612	chr22	46578347	46578471	SINE|MIR|MIRc	+	chr22	46577128	46626899	GRAMD4|ENST00000431155.1	+	46577128,46626750	46577290,46626899	0.666667
Peyers_patch_male_adult_54_years	chr2	43832201	43832244	43832201	-	High_confidence	2	2	10	0.867346	2.725481	chr2	43832184	43832251	LINE|L2|L2a	-	chr2	43814290	43832038	STRG.14615.1	-	43814290,43819914,43822796,43823912,43824218,43824888,43826381,43827982,43831768	43814589,43820100,43822935,43824118,43824432,43825018,43826521,43828115,43832038	0.900000
Peyers_patch_male_adult_54_years	chr5	72174451	72174463	72174451	+	RAMPAGE_only	3	3	12	1.040815	2.522055	chr5	72174423	72174533	SINE|MIR|MIR3	+	chr5	72179627	72195440	MAP1B|ENST00000504492.1	+	72179627,72183742,72186613,72193865	72179907,72183825,72186754,72195440	1.000000
Peyers_patch_male_adult_54_years	chr16	19449574	19449600	19449599	+	RAMPAGE_only	8	8	33	2.862240	4.176109	chr16	19449636	19450005	LTR|ERVL-MaLR|THE1D	+	chr16	19456449	19499113	TMC5|ENST00000219821.9	+	19456449,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19457016,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	0.787879
Peyers_patch_male_adult_54_years	chr2	227534932	227534933	227534932	+	RAMPAGE_only	16	18	24	2.081629	3.442862	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.708333
Peyers_patch_male_adult_54_years	chr1	247171424	247171425	247171424	-	High_confidence	10	10	14	1.214284	2.565448	chr1	247171309	247171510	LTR|ERV1|MER57E3	+	chr1	247156419	247171967	ZNF124|ENST00000543802.2	-	247156419,247159005,247159686,247171847	247157403,247159066,247159813,247171967	0.857143
Peyers_patch_male_adult_54_years	chr6	44126632	44126633	44126632	+	High_confidence	90	91	108	9.367332	5.219095	chr6	44126578	44126686	LINE|CR1|X7A_LINE	-	chr6	44126641	44136476	STRG.51041.10	+	44126641,44126797,44132216,44134560,44135016,44135327,44136348	44126715,44127141,44132289,44134743,44135096,44135366,44136476	0.981481
Peyers_patch_male_adult_54_years	chr8	140755445	140755461	140755445	-	RAMPAGE_only	3	3	9	0.780611	2.750000	chr8	140755303	140755648	LINE|L2|L2a	+	chr8	140750202	140764260	PTK2|ENST00000520843.5	-	140750202,140752231,140761164,140762367,140764233	140750409,140752316,140761262,140762388,140764260	0.555556
Peyers_patch_male_adult_54_years	chr13	46374832	46374833	46374832	-	RAMPAGE_only	18	20	21	1.821426	3.646439	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46371940	46378645	RUBCNL|ENST00000439642.1	-	46371940,46377889,46378446	46372597,46378005,46378645	0.857143
Peyers_patch_male_adult_54_years	chr8	29735252	29735265	29735264	-	High_confidence	5	5	16	1.387753	2.732915	chr8	29735013	29735262	SINE|MIR|MIR	-	chr8	29673921	29735223	LINC00589|ENST00000518623.5	-	29673921,29677909,29726155,29735170	29674443,29678004,29726423,29735223	0.500000
Peyers_patch_male_adult_54_years	chr8	143558019	143558020	143558019	+	High_confidence	22	22	22	1.908160	3.516028	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.863636
Peyers_patch_male_adult_54_years	chr5	99484704	99484722	99484704	+	RAMPAGE_only	4	4	10	0.867346	2.646439	chr5	99484511	99484868	LTR|ERVL-MaLR|THE1B	+	chr5	99532627	99534611	GUSBP8|ENST00000502652.2	+	99532627,99533795,99534188,99534453	99532816,99533944,99534371,99534611	0.600000
Peyers_patch_male_adult_54_years	chr6	118651592	118651593	118651592	-	High_confidence	8	8	12	1.040815	2.855389	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118651198	118651653	STRG.54164.1	-	118651198	118651653	0.500000
Peyers_patch_male_adult_54_years	chr7	30594379	30594390	30594389	-	High_confidence	43	51	81	7.025499	5.078492	chr7	30594385	30594501	SINE|MIR|MIR3	+	chr7	30577903	30594760	STRG.58571.8	-	30577903,30579005,30579230,30584710,30585329,30594710	30578091,30579128,30579314,30584808,30585479,30594760	0.543210
Peyers_patch_male_adult_54_years	chr5	70401504	70401530	70401504	+	RAMPAGE_only	16	19	41	3.556117	3.975071	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.926829
Peyers_patch_male_adult_54_years	chr9	113520029	113520060	113520029	+	RAMPAGE_only	5	7	16	1.387753	2.923231	chr9	113519960	113520041	LINE|CR1|L3	-	chr9	113505261	113542091	RGS3|ENST00000374136.5	+	113505261,113506387,113507286,113508540,113514457,113517540,113522929,113529220,113536795,113541319	113505523,113506493,113507638,113508580,113514654,113517624,113523041,113529264,113536918,113542091	0.687500
Peyers_patch_male_adult_54_years	chr16	29736920	29736924	29736923	-	High_confidence	40	48	70	6.071419	5.224183	chr16	29736740	29737042	LTR|ERVL-MaLR|THE1C	-	chr16	29734592	29736901	STRG.110441.2	-	29734592,29736823	29736707,29736901	0.900000
Peyers_patch_male_adult_54_years	chr7	103152526	103152560	103152531	+	High_confidence	6	7	24	2.081629	3.501398	chr7	103152344	103152807	LTR|ERV1|LTR2	+	chr7	103152232	103216174	STRG.61953.1	+	103152232,103194976,103214564	103153073,103195068,103216174	0.916667
Peyers_patch_male_adult_54_years	chr1	150173303	150173348	150173347	+	High_confidence	34	34	99	8.586721	5.180574	chr1	150172963	150173624	LTR|ERVL|MER77	-	chr1	150173048	150181429	AC242988.2|ENST00000647691.1	+	150173048,150173729,150180911	150173600,150173814,150181429	0.818182
Peyers_patch_male_adult_54_years	chr1	181175066	181175111	181175079	+	High_confidence	18	22	50	4.336728	3.963119	chr1	181174891	181175347	LTR|ERVL-MaLR|MLT1D	+	chr1	181175262	181175660	STRG.9438.1	+	181175262	181175660	0.700000
Peyers_patch_male_adult_54_years	chr9	69123014	69123050	69123014	+	High_confidence	9	12	33	2.862240	3.375000	chr9	69122999	69123107	DNA|hAT-Charlie|MER5A1	+	chr9	69123047	69246746	TJP2|ENST00000647986.1	+	69123047,69151650,69185086,69212547,69216338,69218256,69220886,69225303,69226021,69227764,69227980,69229183,69230081,69234438,69236027,69236948,69237877,69238709,69239936,69246689	69123113,69151771,69185204,69212601,69216463,69218359,69221496,69225407,69226175,69227873,69228114,69229250,69230232,69234547,69236238,69237136,69237973,69238789,69240147,69246746	0.909091
Peyers_patch_male_adult_54_years	chr6	101203219	101203262	101203249	+	High_confidence	23	26	118	10.234678	5.377694	chr6	101203057	101203452	LTR|ERVL-MaLR|MLT1A1	+	chr6	101203242	101272083	STRG.53146.1	+	101203242,101205076,101231669,101244629,101268387	101203374,101205143,101231924,101244656,101272083	0.567797
Peyers_patch_male_adult_54_years	chr6	42227089	42227096	42227089	+	RAMPAGE_only	20	24	48	4.163259	4.416633	chr6	42226978	42227346	DNA|TcMar-Tigger|MamRep434	-	chr6	42234386	42235026	STRG.50894.1	+	42234386,42234793	42234500,42235026	0.875000
Peyers_patch_male_adult_54_years	chr15	45397248	45397346	45397283	-	High_confidence	191	192	1206	104.601875	5.807321	chr15	45397083	45398013	LTR|ERVL|MER21C	+	chr15	45364823	45397259	STRG.105494.5	-	45364823,45366045,45366370,45368069,45369325,45376600,45380483,45396921	45364860,45366210,45366508,45368260,45369521,45376819,45380569,45397259	0.990879
Peyers_patch_male_adult_54_years	chr15	101295822	101295828	101295827	+	High_confidence	18	18	38	3.295913	4.083068	chr15	101295782	101295880	LINE|L1|L1ME3	-	chr15	101296790	101297281	STRG.108639.1	+	101296790	101297281	0.526316
Peyers_patch_male_adult_54_years	chr19	5847518	5847519	5847518	+	High_confidence	15	15	15	1.301018	2.923231	chr19	5847388	5847625	LTR|ERV1|LTR7B	+	chr19	5847477	5847820	STRG.121271.1	+	5847477	5847820	0.866667
Peyers_patch_male_adult_54_years	chr4	2037119	2037123	2037119	+	High_confidence	11	13	23	1.994895	3.118275	chr4	2036935	2037276	LTR|ERVL-MaLR|MSTA	+	chr4	2036502	2043970	STRG.33732.1	+	2036502,2039996,2042326,2042735,2043860	2036661,2040092,2042484,2042824,2043970	0.695652
Peyers_patch_male_adult_54_years	chr11	134467260	134467265	134467264	+	High_confidence	68	69	123	10.668350	5.674489	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134467272	134476780	STRG.89526.1	+	134467272,134467864,134469486	134467615,134467987,134476780	0.829268
Peyers_patch_male_adult_54_years	chr2	229232041	229232043	229232042	-	High_confidence	5	7	9	0.780611	2.503258	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.666667
Peyers_patch_male_adult_54_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	14	14	14	1.214284	2.950212	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
Peyers_patch_male_adult_54_years	chr13	22040971	22040975	22040971	+	High_confidence	19	21	32	2.775506	4.054229	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.781250
Peyers_patch_male_adult_54_years	chr15	58528582	58528583	58528582	+	High_confidence	12	12	15	1.301018	3.521641	chr15	58528515	58528670	SINE|Alu|AluJb	-	chr15	58528558	58529020	STRG.106138.1	+	58528558	58529020	0.533333
Peyers_patch_male_adult_54_years	chr1	174874418	174874441	174874438	+	High_confidence	9	9	34	2.948975	4.256149	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.676471
Peyers_patch_male_adult_54_years	chr3	139344536	139344548	139344547	+	High_confidence	39	39	63	5.464277	4.669539	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.936508
Peyers_patch_male_adult_54_years	chr1	19344373	19344417	19344395	-	RAMPAGE_only	4	4	23	1.994895	3.606937	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.956522
Peyers_patch_male_adult_54_years	chr16	63617835	63617852	63617849	-	High_confidence	3	3	13	1.127549	3.084963	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63302337	63618046	STRG.111103.2	-	63302337,63531224,63617692	63305420,63531304,63618046	0.538462
Peyers_patch_male_adult_54_years	chr19	5680240	5680249	5680240	-	High_confidence	6	6	14	1.214284	3.026987	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.928571
Peyers_patch_male_adult_54_years	chr3	122183657	122183731	122183718	+	High_confidence	7	7	19	1.647957	3.681881	chr3	122183547	122183832	LINE|L2|L2c	-	chr3	122183682	122286497	CASR|NM_000388.3	+	122183682,122253947,122257080,122261527,122275811,122282112,122283686	122183812,122254374,122257387,122262412,122276042,122282236,122286497	0.526316
Peyers_patch_male_adult_54_years	chr4	1241410	1241448	1241430	-	RAMPAGE_only	3	3	11	0.954080	2.721928	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1248670	STRG.33670.9	-	1225437,1228198,1238182,1241324,1241650	1225566,1228343,1238337,1241519,1248670	0.818182
Peyers_patch_male_adult_54_years	chr2	113221422	113221459	113221444	-	RAMPAGE_only	5	5	14	1.214284	3.026987	chr2	113221396	113221649	SINE|MIR|MIR	+	chr2	113218248	113235443	PAX8|ENST00000465084.1	-	113218248,113220091,113227098,113235393	113218609,113220178,113227256,113235443	0.785714
Peyers_patch_male_adult_54_years	chr12	4720399	4720433	4720429	+	High_confidence	208	218	665	57.678480	6.028374	chr12	4720007	4720593	LTR|ERVK|LTR14C	-	chr12	4720340	4772726	GALNT8|ENST00000252318.6	+	4720340,4726531,4739162,4744516,4745428,4746143,4760957,4763252,4763951,4765378,4772444	4720888,4726829,4739329,4744700,4745626,4746258,4761143,4763390,4764047,4765546,4772726	0.971429
Peyers_patch_male_adult_54_years	chr5	160229132	160229147	160229146	+	High_confidence	6	6	23	1.994895	3.224679	chr5	160228757	160229177	LINE|L2|L2c	+	chr5	160229429	160238716	FABP6|ENST00000402432.3	+	160229429,160232097,160234819,160238605	160229624,160232273,160234909,160238716	1.000000
Peyers_patch_male_adult_54_years	chr14	94657907	94657908	94657907	-	RAMPAGE_only	24	27	27	2.341833	4.310443	chr14	94657425	94658900	Retroposon|SVA|SVA_C	+	chr14	94378375	94390693	SERPINA1|ENST00000393088.8	-	94378375,94379463,94380870,94382591,94388559,94388800,94390456	94378640,94379611,94381141,94383241,94388663,94389010,94390693	1.000000
Peyers_patch_male_adult_54_years	chr8	27977120	27977126	27977120	-	RAMPAGE_only	6	6	14	1.214284	2.842371	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904368	27992624	SCARA5|ENST00000524352.5	-	27904368,27907147,27909662,27921570,27966413,27987503,27992256	27904834,27907246,27909743,27922245,27966542,27987630,27992624	0.785714
Peyers_patch_male_adult_54_years	chr1	1655409	1655478	1655477	-	RAMPAGE_only	10	10	42	3.642851	4.442679	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.833333
Peyers_patch_male_adult_54_years	chr6	113873326	113873347	113873326	-	High_confidence	81	83	414	35.908106	5.630241	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.881643
Peyers_patch_male_adult_54_years	chr1	73383174	73383210	73383209	+	High_confidence	5	7	15	1.301018	3.521641	chr1	73382758	73383433	DNA|TcMar-Tigger|MER44C	-	chr1	73383223	73385466	STRG.4421.1	+	73383223,73384982	73383308,73385466	0.533333
Peyers_patch_male_adult_54_years	chr22	35311038	35311072	35311057	+	High_confidence	13	13	39	3.382648	4.087221	chr22	35310706	35311148	LINE|L2|L2c	-	chr22	35311061	35323819	TOM1|ENST00000443206.2	+	35311061,35317876,35321958,35323027,35323495,35323767	35311127,35317961,35322037,35323177,35323630,35323819	0.923077
Peyers_patch_male_adult_54_years	chr9	73080369	73080370	73080369	-	High_confidence	38	38	38	3.295913	4.333325	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	1.000000
Peyers_patch_male_adult_54_years	chr1	2048509	2048551	2048550	+	RAMPAGE_only	18	34	63	5.464277	4.995148	chr1	2048414	2048562	LINE|L2|L2a	-	chr1	2050469	2185395	PRKCZ|ENST00000378567.7	+	2050469,2055440,2056483,2059540,2135261,2144209,2146026,2148871,2150789,2155994,2169517,2172054,2172300,2173896,2174753,2175223,2184582,2184921	2050701,2055562,2056573,2059591,2135347,2144341,2146108,2148924,2150978,2156092,2169604,2172190,2172388,2174016,2174833,2175313,2184698,2185395	0.920635
Peyers_patch_male_adult_54_years	chr3	108375756	108375788	108375756	+	RAMPAGE_only	4	6	17	1.474487	3.263933	chr3	108375646	108375863	LTR|ERVL|LTR33	-	chr3	108353655	108378285	HHLA2|ENST00000482099.1	+	108353655,108355114,108357843,108362341,108375749,108376492	108353780,108355381,108358161,108362446,108375800,108378285	0.882353
Peyers_patch_male_adult_54_years	chr11	64242546	64242548	64242546	+	High_confidence	9	12	18	1.561222	3.197160	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
Peyers_patch_male_adult_54_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	7	7	8	0.693876	2.521641	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.625000
Peyers_patch_male_adult_54_years	chr16	19430417	19430418	19430417	+	RAMPAGE_only	6	6	9	0.780611	2.725481	chr16	19430397	19430533	LINE|RTE-X|L4_B_Mam	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	1.000000
Peyers_patch_male_adult_54_years	chr15	71331899	71331953	71331909	+	High_confidence	24	24	131	11.362227	5.667992	chr15	71331901	71332325	LTR|ERVL|LTR16B2	-	chr15	71332119	71352460	AC064799.2|ENST00000648513.1	+	71332119,71348151,71352193	71332372,71348490,71352460	0.687023
Peyers_patch_male_adult_54_years	chr1	171251849	171251857	171251849	-	High_confidence	4	4	8	0.693876	2.521641	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171247663	171251839	STRG.8866.1	-	171247663,171251522	171247727,171251839	0.750000
Peyers_patch_male_adult_54_years	chrY	21451814	21451914	21451885	-	High_confidence	43	43	196	16.999973	6.215561	chrY	21451769	21452370	LTR|ERVK|LTR14C	-	chrY	21423214	21451900	STRG.136773.1	-	21423214,21451643	21426263,21451900	0.642857
Peyers_patch_male_adult_54_years	chr3	32077671	32077694	32077693	-	High_confidence	3	3	12	1.040815	2.845351	chr3	32077310	32077987	LTR|ERV1|MER50B	+	chr3	31876432	32077580	OSBPL10|ENST00000479173.1	-	31876432,31879654,32046490,32077395	31876512,31879830,32046603,32077580	0.583333
Peyers_patch_male_adult_54_years	chr1	120609356	120609364	120609363	-	High_confidence	3	3	7	0.607142	2.584963	chr1	120609331	120609453	SINE|MIR|MIR3	+	chr1	120537358	120609412	STRG.6899.4	-	120537358,120538322,120538570,120541891,120543946,120544266,120545280,120548288,120548640,120548972,120550144,120573071,120578705,120579070,120609288	120537602,120538404,120538735,120543196,120544084,120544380,120545439,120548501,120548733,120549092,120550276,120573189,120578881,120579194,120609412	0.857143
Peyers_patch_male_adult_54_years	chr8	75324380	75324381	75324380	-	High_confidence	11	11	11	0.954080	2.594907	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	1.000000
Peyers_patch_male_adult_54_years	chr4	68881079	68881080	68881079	-	High_confidence	436	539	556	48.224414	5.912102	chr4	68880689	68881286	LTR|ERV1|LTR1A2	-	chr4	68879575	68881068	STRG.36318.1	-	68879575	68881068	0.949640
Peyers_patch_male_adult_54_years	chr3	132267520	132267543	132267542	-	High_confidence	6	10	22	1.908160	3.754442	chr3	132267462	132267786	LINE|L2|L2c	-	chr3	132242755	132267505	STRG.30597.1	-	132242755,132246570,132267464	132244336,132246732,132267505	0.727273
Peyers_patch_male_adult_54_years	chr21	29077441	29077487	29077486	+	High_confidence	11	11	50	4.336728	4.598563	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.540000
Peyers_patch_male_adult_54_years	chr2	219122266	219122332	219122331	-	RAMPAGE_only	6	6	29	2.515302	3.985228	chr2	219122294	219122472	LINE|L2|L2c	+	chr2	219076291	219124764	NHEJ1|ENST00000494211.5	-	219076291,219077245,219078088,219124610	219076455,219077364,219078206,219124764	0.689655
Peyers_patch_male_adult_54_years	chr20	44384649	44384650	44384649	-	High_confidence	11	11	13	1.127549	3.085055	chr20	44384609	44384776	LTR|ERVL-MaLR|MLT1I	-	chr20	44372745	44384671	HNF4A-AS1|ENST00000609152.1	-	44372745,44384522	44373009,44384671	0.538462
Peyers_patch_male_adult_54_years	chr1	151369315	151369321	151369315	-	High_confidence	3	3	10	0.867346	2.646439	chr1	151369225	151369333	DNA|hAT-Tip100|MER91A	-	chr1	151369067	151370285	SELENBP1|ENST00000427867.2	-	151369067,151369441,151369712,151370200	151369189,151369554,151369769,151370285	0.800000
Peyers_patch_male_adult_54_years	chr14	35294442	35294473	35294442	+	RAMPAGE_only	2	2	8	0.693876	3.000000	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	0.875000
Peyers_patch_male_adult_54_years	chr1	59474776	59474777	59474776	+	RAMPAGE_only	7	7	9	0.780611	2.503258	chr1	59474798	59475013	SINE|MIR|MIRb	+	chr1	59441550	59554226	STRG.3761.4	+	59441550,59456960,59512310,59554123	59442015,59457076,59512439,59554226	0.555556
Peyers_patch_male_adult_54_years	chr13	18280054	18280080	18280079	-	High_confidence	6	11	24	2.081629	4.001823	chr13	18279944	18280243	LINE|L2|L2a	+	chr13	18271879	18280041	STRG.96002.3	-	18271879,18273880,18279319	18271939,18273950,18280041	0.916667
Peyers_patch_male_adult_54_years	chr1	222737262	222737290	222737289	+	High_confidence	49	52	126	10.928554	5.869706	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.793651
Peyers_patch_male_adult_54_years	chr12	47904627	47904665	47904627	-	High_confidence	2	2	12	1.040815	2.913977	chr12	47904577	47904684	LINE|CR1|L3	-	chr12	47842627	47905003	VDR|ENST00000550325.5	-	47842627,47846334,47846656,47855629,47857128,47857503,47865046,47878967,47882693,47904563	47845005,47846451,47846808,47855801,47857249,47857688,47865177,47879115,47882774,47905003	0.583333
Peyers_patch_male_adult_54_years	chrX	134452828	134452853	134452852	+	RAMPAGE_only	8	9	29	2.515302	4.324863	chrX	134452607	134453007	LINE|L2|L2	-	chrX	134460144	134500668	HPRT1|NM_000194.2	+	134460144,134473358,134475180,134486464,134490187,134493507,134498389,134498607,134500029	134460338,134473465,134475364,134486530,134490205,134493590,134498436,134498684,134500668	0.724138
Peyers_patch_male_adult_54_years	chr11	44564426	44564427	44564426	+	RAMPAGE_only	7	7	10	0.867346	2.503258	chr11	44564373	44564477	SINE|MIR|MIRc	+	chr11	44565590	44620363	CD82|ENST00000227155.8	+	44565590,44587474,44594642,44600157,44605057,44605354,44615271,44618161,44618639,44619048	44565736,44587556,44594725,44600230,44605182,44605429,44615373,44618365,44618723,44620363	0.500000
Peyers_patch_male_adult_54_years	chr1	101623436	101623448	101623436	+	High_confidence	8	8	22	1.908160	3.913977	chr1	101623234	101623605	LTR|ERVL-MaLR|MSTD	+	chr1	101623464	101624513	STRG.5944.1	+	101623464	101624513	0.590909
Peyers_patch_male_adult_54_years	chr8	47998234	47998271	47998234	+	RAMPAGE_only	11	11	31	2.688771	4.185230	chr8	47995253	47998768	LTR|ERV1|HERVFH21-int	-	chr8	48008399	48064708	UBE2V2|ENST00000523111.6	+	48008399,48043032,48049852,48060681	48008470,48043181,48049978,48064708	0.612903
Peyers_patch_male_adult_54_years	chr8	144063445	144063498	144063457	-	High_confidence	5	5	14	1.214284	3.324863	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144058886	144063965	OPLAH|ENST00000567871.2	-	144058886,144058979,144059598,144059861,144063699	144058896,144059079,144059790,144060085,144063965	0.785714
Peyers_patch_male_adult_54_years	chrX	66258396	66258397	66258396	+	RAMPAGE_only	9	9	10	0.867346	2.641604	chrX	66258313	66258772	LINE|L2|L2c	-	chrX	66199913	66267383	STRG.133343.5	+	66199913,66203363,66207194,66208114,66255034,66256104,66260099,66263643,66266439	66200752,66203577,66207334,66208246,66255141,66258979,66260262,66263688,66267383	0.900000
Peyers_patch_male_adult_54_years	chr1	25818704	25818714	25818705	+	High_confidence	6	11	23	1.994895	3.849224	chr1	25818458	25818747	LTR|ERVL|LTR16A1	-	chr1	25818639	25829514	MTFR1L|ENST00000424294.5	+	25818639,25823018,25823643,25826301,25826614,25829508	25818852,25823128,25823748,25826411,25826826,25829514	0.869565
Peyers_patch_male_adult_54_years	chr19	12800944	12800974	12800944	-	High_confidence	7	7	15	1.301018	2.866248	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	1.000000
Peyers_patch_male_adult_54_years	chr2	240012387	240012388	240012387	-	RAMPAGE_only	4	4	7	0.607142	2.521641	chr2	240012260	240012484	LINE|L2|L2a	+	chr2	239960740	240025323	NDUFA10|ENST00000485344.6	-	239960740,239990073,240005209,240007315,240011616,240018552,240021196,240022171,240025226	239961186,239990182,240005295,240007370,240014860,240018639,240021412,240022340,240025323	0.857143
Peyers_patch_male_adult_54_years	chr4	75127183	75127252	75127183	-	RAMPAGE_only	6	6	32	2.775506	4.069549	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.750000
Peyers_patch_male_adult_54_years	chr19	55333969	55333970	55333969	-	High_confidence	4	4	7	0.607142	2.807355	chr19	55333705	55334001	LINE|L1|L1MB5	-	chr19	55312801	55333964	STRG.124263.2	-	55312801,55316785,55320038,55320390,55320557,55320968,55322647,55333869	55313055,55316966,55320166,55320458,55320617,55321093,55322743,55333964	0.714286
Peyers_patch_male_adult_54_years	chr20	44448247	44448250	44448247	+	High_confidence	10	10	17	1.474487	3.381580	chr20	44447665	44448368	LINE|L2|L2b	-	chr20	44448241	44449545	STRG.126921.1	+	44448241	44449545	0.941176
Peyers_patch_male_adult_54_years	chr12	118139096	118139097	118139096	+	High_confidence	8	8	8	0.693876	2.750000	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.875000
Peyers_patch_male_adult_54_years	chr11	57793743	57793778	57793777	+	RAMPAGE_only	4	4	12	1.040815	2.732159	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57781602	57796584	CTNND1|ENST00000530068.5	+	57781602,57791491,57794009,57795576,57796456	57781646,57791673,57794081,57795729,57796584	0.583333
Peyers_patch_male_adult_54_years	chr7	107580245	107580267	107580264	+	High_confidence	70	70	370	32.091786	5.992090	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.927027
Peyers_patch_male_adult_54_years	chr22	32111433	32111613	32111433	+	RAMPAGE_only	27	30	365	31.658113	5.704790	chr22	32111132	32111510	LTR|ERVL-MaLR|MLT1B	-	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	1.000000
Peyers_patch_male_adult_54_years	chr6	79631254	79631339	79631302	+	High_confidence	42	42	196	16.999973	6.059952	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.994898
Peyers_patch_male_adult_54_years	chr2	96303177	96303200	96303177	-	RAMPAGE_only	3	5	14	1.214284	3.392747	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.928571
Peyers_patch_male_adult_54_years	chr12	643627	643636	643627	-	High_confidence	5	10	17	1.474487	3.327820	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.647059
Peyers_patch_male_adult_54_years	chr3	108295736	108295739	108295736	+	High_confidence	13	13	26	2.255098	3.979098	chr3	108295771	108295812	DNA|hAT-Ac|OldhAT1	+	chr3	108296489	108378285	HHLA2|NM_001282558.1	+	108296489,108310654,108328269,108351787,108353426,108355114,108357843,108362341,108376492,108377257	108296599,108310741,108328347,108351877,108353780,108355381,108358161,108362446,108376557,108378285	0.653846
Peyers_patch_male_adult_54_years	chr12	6493589	6493591	6493590	-	High_confidence	10	14	18	1.561222	3.499228	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	0.944444
Peyers_patch_male_adult_54_years	chr11	57794023	57794040	57794039	+	RAMPAGE_only	6	6	17	1.474487	2.727217	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.941176
Peyers_patch_male_adult_54_years	chr11	13676884	13676901	13676898	+	RAMPAGE_only	4	4	13	1.127549	3.084963	chr11	13676891	13676997	SINE|MIR|MIR3	-	chr11	13668710	13713084	FAR1|ENST00000532701.1	+	13668710,13694758,13700316,13707899,13710692,13711763,13711927,13712965	13668806,13694954,13700492,13708079,13710870,13711808,13712046,13713084	0.692308
Peyers_patch_male_adult_54_years	chr6	31186084	31186151	31186117	-	High_confidence	85	85	244	21.163232	6.224617	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31176476	31186514	STRG.50294.2	-	31176476,31182882	31177899,31186514	0.926230
Peyers_patch_male_adult_54_years	chr18	7946875	7946898	7946878	+	High_confidence	39	41	116	10.061209	5.355063	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946883	8378469	STRG.118454.3	+	7946883,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8143646,8244057,8247844,8253226,8296367,8314780,8319177,8343422,8370889,8376045,8376461	7946977,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8143779,8244209,8247919,8253414,8296455,8314857,8319214,8343520,8371006,8376200,8378469	0.991379
Peyers_patch_male_adult_54_years	chr2	171555657	171555834	171555747	+	RAMPAGE_only	19	19	238	20.642824	4.947293	chr2	171555665	171555905	SINE|MIR|MIR	-	chr2	171522476	171557646	CYBRD1|ENST00000375252.3	+	171522476,171553345,171554523	171522738,171553500,171557646	1.000000
Peyers_patch_male_adult_54_years	chr1	200106125	200106126	200106125	+	RAMPAGE_only	8	8	8	0.693876	2.500000	chr1	200106061	200106356	SINE|Alu|AluSx3	-	chr1	200073367	200159584	STRG.10141.7	+	200073367,200094707,200137350	200093857,200120955,200159584	0.875000
Peyers_patch_male_adult_54_years	chr6	31186529	31186568	31186567	-	High_confidence	14	15	59	5.117339	5.060314	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31176476	31186514	STRG.50294.2	-	31176476,31182882	31177899,31186514	0.983051
Peyers_patch_male_adult_54_years	chr2	200889135	200889154	200889153	-	High_confidence	17	17	48	4.163259	4.596726	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889154	PPIL3|ENST00000392283.8	-	200870955,200876918,200881420,200882341,200885697,200887612,200888955	200871521,200877037,200881488,200882435,200885772,200887685,200889154	0.916667
Peyers_patch_male_adult_54_years	chr10	94823821	94823837	94823836	+	RAMPAGE_only	10	10	22	1.908160	3.516028	chr10	94823878	94824465	LINE|L1|HAL1	+	chr10	94773836	94853164	CYP2C19|ENST00000645461.1	+	94773836,94775389,94780498,94781820,94842836,94849916,94852732	94775220,94775539,94780659,94781997,94843024,94850058,94853164	0.545455
Peyers_patch_male_adult_54_years	chr11	72758533	72758551	72758550	-	High_confidence	7	7	12	1.040815	2.732159	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754862	72757939	STARD10|ENST00000543089.1	-	72754862,72755700,72757766	72755142,72755753,72757939	0.750000
Peyers_patch_male_adult_54_years	chr21	38802834	38802837	38802836	+	RAMPAGE_only	5	9	13	1.127549	2.653544	chr21	38802775	38802857	LINE|L2|L2c	+	chr21	38805306	38824955	ETS2|NM_001256295.1	+	38805306,38805970,38810034,38813002,38814272,38814780,38817007,38818424,38819502,38821585,38822673	38805616,38806120,38810106,38813114,38814392,38814981,38817091,38818646,38819766,38821704,38824955	0.846154
Peyers_patch_male_adult_54_years	chr11	67886471	67886535	67886471	+	High_confidence	99	101	346	30.010157	5.706527	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.895954
Peyers_patch_male_adult_54_years	chr1	17513375	17513416	17513375	+	RAMPAGE_only	2	2	8	0.693876	2.750000	chr1	17513264	17513548	DNA|TcMar-Mariner|MARNA	-	chr1	17539834	17697875	ARHGEF10L|NM_018125.3	+	17539834,17580552,17587459,17588445,17602126,17603507,17607801,17613057,17616093,17619338,17621863,17622995,17624386,17625955,17627329,17632320,17634547,17634834,17637887,17638561,17640201,17648553,17654635,17655878,17656553,17664446,17687572,17695157,17696847	17539950,17580632,17587645,17588479,17602218,17603591,17607977,17613174,17616202,17619445,17621941,17623175,17624503,17626048,17627503,17632466,17634562,17635016,17638003,17638689,17640302,17648675,17654722,17656102,17656708,17664595,17687747,17695280,17697875	0.625000
Peyers_patch_male_adult_54_years	chr19	38820161	38820194	38820161	+	High_confidence	12	12	35	3.035709	4.378864	chr19	38820053	38820358	SINE|Alu|AluY	-	chr19	38820165	38823223	AC104534.1|ENST00000594558.1	+	38820165,38822984	38820492,38823223	0.942857
Peyers_patch_male_adult_54_years	chr10	35352673	35352738	35352737	+	RAMPAGE_only	45	45	66	5.724481	4.685446	chr10	35352603	35352744	LINE|L2|L2c	-	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.893939
Peyers_patch_male_adult_54_years	chrX	51834360	51834361	51834360	+	RAMPAGE_only	17	17	23	1.994895	3.377278	chrX	51834144	51834533	LTR|ERVL|LTR52	+	chrX	51803058	51902354	MAGED1|NM_001005332.1	+	51803058,51894268,51895052,51896408,51897207,51897546,51897794,51898113,51898284,51898580,51900181,51901552,51902145	51803117,51894349,51895760,51897077,51897271,51897626,51897886,51898193,51898327,51898643,51900296,51901938,51902354	1.000000
Peyers_patch_male_adult_54_years	chr6	167711967	167711981	167711980	+	High_confidence	8	8	14	1.214284	2.873141	chr6	167711803	167712401	LINE|L2|L2a	-	chr6	167712005	167712307	STRG.56821.1	+	167712005	167712307	0.857143
Peyers_patch_male_adult_54_years	chr1	1721622	1721689	1721636	-	High_confidence	14	14	60	5.204073	5.013419	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.866667
Peyers_patch_male_adult_54_years	chr1	222737198	222737216	222737198	+	High_confidence	11	11	20	1.734691	2.865577	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737206	222749524	FAM177B|ENST00000434700.5	+	222737206,222737903,222746530,222747014,222749464	222737238,222738021,222746719,222747081,222749524	0.950000
Peyers_patch_male_adult_54_years	chr17	42136457	42136480	42136479	-	High_confidence	3	5	9	0.780611	2.725481	chr17	42136440	42136680	SINE|MIR|MIRb	+	chr17	42128329	42136431	RAB5C|ENST00000552162.5	-	42128329,42128648,42130336,42136340	42128383,42128800,42130590,42136431	0.555556
Peyers_patch_male_adult_54_years	chr14	92726887	92726903	92726887	-	RAMPAGE_only	11	18	28	2.428568	3.553090	chr14	92726862	92727148	LTR|ERVL-MaLR|MLT1L	+	chr14	92703806	92748612	LGMN|ENST00000555699.5	-	92703806,92709671,92711658,92711836,92712804,92713822,92714375,92716135,92717379,92718746,92732648,92748488	92704361,92709872,92711748,92711955,92712871,92713885,92714451,92716221,92717461,92718844,92732815,92748612	0.857143
Peyers_patch_male_adult_54_years	chr5	147839237	147839240	147839237	-	High_confidence	11	11	25	2.168364	3.407268	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.880000
Peyers_patch_male_adult_54_years	chr4	132262900	132262901	132262900	+	RAMPAGE_only	21	21	23	1.994895	3.291393	chr4	132262711	132263100	LTR|ERVL-MaLR|MSTA	+	chr4	132295528	132295758	STRG.38895.1	+	132295528	132295758	0.652174
Peyers_patch_male_adult_54_years	chr9	20658312	20658349	20658338	+	High_confidence	3	3	12	1.040815	3.084963	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658318	20694520	STRG.72370.1	+	20658318,20694519	20658826,20694520	0.750000
Peyers_patch_male_adult_54_years	chr9	74848147	74848178	74848147	-	High_confidence	5	5	19	1.647957	2.927451	chr9	74847872	74848586	DNA|TcMar-Tigger|MER44C	-	chr9	74751454	74848786	STRG.73906.4	-	74751454,74755352,74761695,74771702,74775882,74782361,74782678,74785873,74788613,74792623,74796740,74800253,74801897,74808033,74810814,74812298,74816668,74816891,74820303,74821668,74827777,74833997,74840023,74842165,74847889	74752368,74755798,74763134,74771835,74776076,74782476,74782853,74786125,74788742,74792770,74796893,74800482,74802175,74808334,74810868,74812433,74816769,74816964,74820427,74821837,74827949,74834122,74840237,74842343,74848786	0.578947
Peyers_patch_male_adult_54_years	chr4	36979828	36979856	36979849	+	High_confidence	7	7	37	3.209179	4.226628	chr4	36979327	36980655	LINE|L2|L2a	-	chr4	36979855	36980254	STRG.35106.1	+	36979855	36980254	0.675676
Peyers_patch_male_adult_54_years	chr3	171177546	171177593	171177546	-	RAMPAGE_only	5	5	19	1.647957	3.503258	chr3	171177478	171177606	LINE|L2|L2c	+	chr3	171063880	171460063	TNIK|ENST00000470834.5	-	171063880,171066186,171066575,171068847,171071222,171079517,171082250,171084154,171085117,171087341,171093838,171101448,171108064,171110713,171123595,171125911,171128713,171138190,171140398,171157459,171161269,171167094,171175251,171177325,171188701,171190696,171194524,171211115,171228164,171369619,171460006	171063964,171066326,171066735,171068997,171071323,171079652,171082394,171084325,171085229,171087506,171093968,171101633,171108162,171110877,171123702,171126151,171128878,171138379,171140509,171157664,171161336,171167270,171175330,171177380,171188832,171190787,171194635,171211241,171228221,171369685,171460063	0.842105
Peyers_patch_male_adult_54_years	chr8	75324331	75324352	75324331	-	High_confidence	13	14	24	2.081629	3.516151	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.875000
Peyers_patch_male_adult_54_years	chr16	66943874	66944223	66944222	+	RAMPAGE_only	109	111	709	61.494801	7.012926	chr16	66944189	66944323	SINE|Alu|FLAM_A	+	chr16	66934470	66945096	CES2|NR_036684.1	+	66934470,66938036,66939216,66940221,66940436,66941123,66941505,66941767,66942104,66942647,66943298,66943838	66935976,66938241,66939358,66940355,66940695,66941222,66941646,66941848,66942249,66942785,66943371,66945096	1.000000
Peyers_patch_male_adult_54_years	chr1	6277776	6277785	6277783	-	High_confidence	5	10	16	1.387753	3.250000	chr1	6277508	6277865	LINE|L2|L2a	+	chr1	6264387	6277849	STRG.318.8	-	6264387,6277730	6264695,6277849	0.687500
Peyers_patch_male_adult_54_years	chr4	73104191	73104199	73104198	-	High_confidence	9	9	18	1.561222	3.503258	chr4	73103951	73104200	DNA|hAT-Charlie|Charlie2b	-	chr4	73077368	73104398	STRG.36449.7	-	73077368,73078641,73085248,73090666,73094078,73097116,73098072,73102375,73104002	73077533,73078890,73085446,73092300,73094228,73097272,73098520,73102547,73104398	0.666667
Peyers_patch_male_adult_54_years	chr11	123061207	123061322	123061256	-	High_confidence	96	103	247	21.423436	5.237578	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.983806
Peyers_patch_male_adult_54_years	chr11	67633723	67633808	67633783	-	High_confidence	26	44	145	12.576511	6.121289	chr11	67633313	67633935	LINE|L2|L2a	+	chr11	67631338	67633998	STRG.85938.2	-	67631338,67632317,67632602,67632947,67633648	67631894,67632412,67632670,67633103,67633998	0.848276
Peyers_patch_male_adult_54_years	chr9	17014051	17014163	17014075	+	RAMPAGE_only	10	13	81	7.025499	4.865111	chr9	17013826	17014266	LTR|ERVL|MLT2B1	+	chr9	17018519	17112815	AL162725.2|ENST00000430545.3	+	17018519,17048918,17112272	17018789,17049041,17112815	0.543210
Peyers_patch_male_adult_54_years	chr12	10553364	10553365	10553364	+	High_confidence	44	47	55	4.770401	4.686108	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.872727
Peyers_patch_male_adult_54_years	chr8	35744004	35744047	35744016	+	High_confidence	5	6	32	2.775506	4.349200	chr8	35743605	35744700	LINE|L1|L1MC4	-	chr8	35743923	35767350	STRG.66528.1	+	35743923,35748526,35750581,35759319,35766901	35744105,35748695,35750809,35759469,35767350	0.906250
Peyers_patch_male_adult_54_years	chr19	44511382	44511404	44511382	-	RAMPAGE_only	6	6	10	0.867346	2.721928	chr19	44511236	44511355	SINE|MIR|MIRb	-	chr19	44506158	44529525	CEACAM20|NM_001102599.2	-	44506158,44511029,44511636,44512016,44512867,44513171,44520473,44522633,44523985,44525100,44529457	44506214,44511155,44511672,44512078,44512953,44513289,44520752,44522912,44524261,44525244,44529525	0.700000
Peyers_patch_male_adult_54_years	chr19	38822839	38822840	38822839	+	High_confidence	88	88	92	7.979579	4.994729	chr19	38821336	38823305	LTR|ERV1|LTR12C	+	chr19	38822742	38832002	STRG.123286.2	+	38822742,38831035	38823397,38832002	0.913043
Peyers_patch_male_adult_54_years	chr16	19430489	19430573	19430572	+	RAMPAGE_only	9	9	40	3.469382	4.007943	chr16	19430590	19430808	DNA|hAT-Charlie|Charlie18a	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	0.950000
Peyers_patch_male_adult_54_years	chr5	180991644	180991686	180991644	+	RAMPAGE_only	11	11	30	2.602037	3.973557	chr5	180991630	180991740	LINE|L2|L2b	-	chr5	180988844	181006727	STRG.48636.14	+	180988844,181002671,181003855,181004416,181004735,181005333	180997488,181002785,181003876,181004443,181004762,181006727	1.000000
Peyers_patch_male_adult_54_years	chr4	186265464	186265491	186265464	+	High_confidence	3	3	9	0.780611	2.725481	chr4	186265210	186265540	SINE|Alu|AluSx3	+	chr4	186265944	186288780	F11|ENST00000403665.6	+	186265944,186267135,186271608,186273070,186274115,186275786,186276230,186280011,186280222,186280473,186284091,186285637,186286414,186287683,186288452	186266295,186267191,186271771,186273177,186274275,186275896,186276390,186280121,186280385,186280580,186284260,186285813,186286510,186287823,186288780	0.888889
Peyers_patch_male_adult_54_years	chr15	71747851	71747852	71747851	+	RAMPAGE_only	11	11	13	1.127549	2.507380	chr15	71747409	71747892	LTR|ERV1|LTR44	-	chr15	71660454	71767651	THSD4|ENST00000567838.1	+	71660454,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71766698	71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71767651	1.000000
Peyers_patch_male_adult_54_years	chr7	6990719	6990730	6990729	+	High_confidence	8	9	21	1.821426	3.195296	chr7	6989229	6992060	LTR|ERV1|HERVS71-int	-	chr7	6990739	6991571	STRG.57200.1	+	6990739	6991571	0.714286
Peyers_patch_male_adult_54_years	chr7	123176922	123176927	123176922	-	RAMPAGE_only	5	5	11	0.954080	2.913977	chr7	123176656	123176936	LINE|L2|L2a	+	chr7	123115374	123181146	SLC13A1|ENST00000539873.1	-	123115374,123117470,123119080,123123125,123125568,123128844,123129382,123134409,123147158,123148405,123149443,123168373,123168503,123169147,123171767,123180972	123115655,123117608,123119242,123123235,123125675,123128946,123129481,123134529,123147310,123148573,123149620,123168422,123168561,123169335,123171904,123181146	0.545455
Peyers_patch_male_adult_54_years	chr8	12522238	12522274	12522253	+	RAMPAGE_only	11	12	29	2.515302	3.771437	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12565362	12567410	STRG.65591.4	+	12565362	12567410	0.620690
Peyers_patch_male_adult_54_years	chr4	56216106	56216142	56216141	+	High_confidence	51	51	136	11.795900	6.032881	chr4	56216025	56216165	SINE|MIR|MIR3	+	chr4	56216101	56328625	KIAA1211|ENST00000504228.6	+	56216101,56272320,56298213,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56216273,56272492,56298349,56307699,56310734,56313379,56316689,56323567,56324266,56328625	0.757353
Peyers_patch_male_adult_54_years	chr16	63618044	63618046	63618045	-	High_confidence	78	118	129	11.188758	5.838059	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63302337	63618046	STRG.111103.2	-	63302337,63531224,63617692	63305420,63531304,63618046	0.798450
Peyers_patch_male_adult_54_years	chr12	127060613	127060614	127060613	+	High_confidence	54	60	65	5.637746	5.020740	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060519	127147012	STRG.95724.1	+	127060519,127119553,127145711	127061334,127119678,127147012	0.938462
Peyers_patch_male_adult_54_years	chr11	287273	287296	287281	+	RAMPAGE_only	3	3	8	0.693876	2.521641	chr11	287048	287379	LINE|L2|L2a	-	chr11	278364	288978	STRG.83436.1	+	278364,279326,279833,280083,282701,284229,284474,285165,288618,288949	278598,279607,279872,281839,282797,284400,284642,288492,288799,288978	0.875000
Peyers_patch_male_adult_54_years	chr14	49924064	49924065	49924064	-	RAMPAGE_only	63	72	80	6.938765	4.665146	chr14	49923925	49924122	LTR|ERVL-MaLR|MLT1F	-	chr14	49920153	49920546	STRG.102054.1	-	49920153	49920546	0.625000
Peyers_patch_male_adult_54_years	chr11	58578102	58578133	58578102	-	High_confidence	41	50	128	11.102023	5.688378	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.718750
Peyers_patch_male_adult_54_years	chr1	26554703	26554738	26554734	+	RAMPAGE_only	9	9	40	3.469382	3.863461	chr1	26554776	26554842	SINE|MIR|MIR3	+	chr1	26557042	26571508	RPS6KA1|ENST00000403732.2	+	26557042,26558806,26561044,26561504,26571448	26557100,26558937,26561134,26561663,26571508	0.525000
Peyers_patch_male_adult_54_years	chr15	45441852	45441878	45441877	-	High_confidence	9	9	15	1.301018	3.189898	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45433565	45441897	STRG.105513.1	-	45433565,45441780	45434150,45441897	1.000000
Peyers_patch_male_adult_54_years	chr10	122127024	122127027	122127024	+	High_confidence	26	26	47	4.076524	4.569773	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.659574
Peyers_patch_male_adult_54_years	chr15	63050030	63050055	63050054	+	RAMPAGE_only	14	14	27	2.341833	3.569702	chr15	63049931	63050150	SINE|MIR|MIR	+	chr15	63048812	63062277	TPM1|ENST00000560615.5	+	63048812,63056984,63059562,63060868,63061197,63062214	63048920,63057118,63059680,63060939,63061273,63062277	0.703704
Peyers_patch_male_adult_54_years	chr2	208334417	208334445	208334417	+	High_confidence	16	17	39	3.382648	4.025930	chr2	208334119	208334819	LINE|L2|L2a	+	chr2	208334371	208336865	PIKFYVE|ENST00000474721.1	+	208334371,208335305,208335792,208336045,208336837	208334503,208335419,208335901,208336200,208336865	0.948718
Peyers_patch_male_adult_54_years	chr5	78121803	78121811	78121803	-	RAMPAGE_only	3	3	8	0.693876	2.750000	chr5	78118215	78124355	LINE|L1|L1PA4	+	chr5	78088980	78116187	AP3B1|ENST00000517940.1	-	78088980,78100952,78110206,78113751,78116125	78089499,78101025,78110354,78113923,78116187	1.000000
Peyers_patch_male_adult_54_years	chr3	155665114	155665140	155665139	-	RAMPAGE_only	2	2	8	0.693876	2.521641	chr3	155664915	155665290	LTR|ERVL-MaLR|MLT1J2	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	0.875000
Peyers_patch_male_adult_54_years	chr6	11728546	11728547	11728546	-	High_confidence	12	12	15	1.301018	2.664498	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.866667
Peyers_patch_male_adult_54_years	chr20	44360016	44360037	44360016	-	RAMPAGE_only	5	5	10	0.867346	2.646439	chr20	44360016	44360176	LINE|L2|L2b	+	chr20	44349192	44384671	STRG.126940.3	-	44349192,44351867,44355018,44384522	44350856,44351950,44360921,44384671	1.000000
Peyers_patch_male_adult_54_years	chr15	89801738	89801865	89801738	-	High_confidence	17	17	105	9.107128	5.480693	chr15	89801721	89801786	SINE|MIR|MIR1_Amn	+	chr15	89797574	89802736	ANPEP|ENST00000558177.5	-	89797574,89799259,89799425,89801110,89801434,89802406	89797722,89799315,89799559,89801187,89801607,89802736	0.590476
Peyers_patch_male_adult_54_years	chr14	101731410	101731432	101731413	+	High_confidence	13	13	46	3.989790	4.519088	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.847826
Peyers_patch_male_adult_54_years	chr3	134057708	134057754	134057751	-	High_confidence	6	6	29	2.515302	3.615818	chr3	134057661	134057803	DNA|hAT-Ac|OldhAT1	-	chr3	134055249	134057648	LOC100507210|NR_135574.1	-	134055249,134057409	134055660,134057648	0.689655
Peyers_patch_male_adult_54_years	chr19	48637367	48637379	48637367	-	High_confidence	11	11	31	2.688771	4.195816	chr19	48637310	48637367	LINE|L1|X9_LINE	+	chr19	48633085	48637363	DBP|ENST00000601104.1	-	48633085,48635579,48636855	48633655,48635990,48637363	0.838710
Peyers_patch_male_adult_54_years	chr5	34244804	34244826	34244804	-	High_confidence	4	4	11	0.954080	2.663533	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.636364
Peyers_patch_male_adult_54_years	chr4	142474407	142474425	142474407	-	High_confidence	13	13	26	2.255098	3.522055	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.884615
Peyers_patch_male_adult_54_years	chr13	24925910	24925965	24925964	+	High_confidence	4	5	18	1.561222	3.086049	chr13	24925661	24926143	LTR|ERVK|LTR22A	+	chr13	24925950	24933899	STRG.96282.2	+	24925950,24933002,24933745	24926296,24933135,24933899	0.500000
Peyers_patch_male_adult_54_years	chr16	2524767	2524769	2524768	+	RAMPAGE_only	10	16	23	1.994895	2.820899	chr16	2524623	2524807	LINE|L1|HAL1	-	chr16	2527569	2528495	AMDHD2|ENST00000570028.5	+	2527569,2528059,2528235,2528451	2527985,2528148,2528380,2528495	1.000000
Peyers_patch_male_adult_54_years	chr4	2037153	2037170	2037166	+	High_confidence	5	5	10	0.867346	2.641604	chr4	2036935	2037276	LTR|ERVL-MaLR|MSTA	+	chr4	2036502	2043970	STRG.33732.1	+	2036502,2039996,2042326,2042735,2043860	2036661,2040092,2042484,2042824,2043970	0.600000
Peyers_patch_male_adult_54_years	chr17	46162998	46163030	46162998	-	RAMPAGE_only	3	3	18	1.561222	3.572469	chr17	46162487	46163270	LINE|L2|L2b	+	chr17	46032256	46172183	KANSL1|ENST00000639531.1	-	46032256,46033079,46033402,46034160,46038537,46039701,46050532,46066536,46067548,46082440,46094559,46170854	46032299,46033192,46033460,46034285,46038686,46039884,46050704,46066732,46067667,46082542,46094701,46172183	0.611111
Peyers_patch_male_adult_54_years	chr11	63563627	63563682	63563627	-	High_confidence	73	73	204	17.693850	6.257115	chr11	63563436	63563737	SINE|Alu|AluY	+	chr11	63552769	63563383	HRASLS2|ENST00000255695.1	-	63552769,63558391,63560084,63563315	63553065,63558660,63560193,63563383	0.887255
Peyers_patch_male_adult_54_years	chr15	53116365	53116368	53116367	+	High_confidence	21	46	61	5.290808	4.677747	chr15	53116204	53116486	LTR|ERVL-MaLR|MSTD	+	chr15	53116364	53129698	LINC02490|ENST00000559915.1	+	53116364,53118218,53129238	53116458,53118265,53129698	0.655738
Peyers_patch_male_adult_54_years	chr19	10825193	10825212	10825211	+	RAMPAGE_only	13	14	24	2.081629	3.220337	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	0.916667
Peyers_patch_male_adult_54_years	chr12	109053947	109053957	109053951	-	High_confidence	9	9	42	3.642851	4.079950	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.785714
Peyers_patch_male_adult_54_years	chr1	195722378	195722382	195722381	-	High_confidence	163	163	273	23.678534	5.195823	chr1	195721970	195723453	LTR|ERV1|LTR12C	-	chr1	195570988	195722394	STRG.9954.1	-	195570988,195690604,195721819	195571532,195690765,195722394	0.923077
Peyers_patch_male_adult_54_years	chr11	64620606	64620641	64620606	-	RAMPAGE_only	15	15	35	3.035709	4.219528	chr11	64620584	64620687	SINE|tRNA-Deu|AmnSINE2	-	chr11	64606173	64623996	NRXN2|ENST00000464307.5	-	64606173,64620293,64622752	64608082,64620372,64623996	0.628571
Peyers_patch_male_adult_54_years	chr6	87213699	87213756	87213717	+	High_confidence	12	16	135	11.709165	5.851424	chr6	87213283	87213856	LTR|ERV1|LTR10A	-	chr6	87213713	87222904	ZNF292|ENST00000524067.5	+	87213713,87214997,87215902,87216298,87218595,87222769	87213865,87215142,87216057,87216377,87218731,87222904	0.525926
Peyers_patch_male_adult_54_years	chr22	31124213	31124256	31124213	+	RAMPAGE_only	10	10	26	2.255098	3.043856	chr22	31124115	31124241	SINE|MIR|MIR3	-	chr22	31122993	31125373	STRG.129923.10	+	31122993,31124844	31124263,31125373	0.961538
Peyers_patch_male_adult_54_years	chr16	29760809	29760853	29760848	+	High_confidence	316	343	1295	112.321251	6.053726	chr16	29760474	29761018	LTR|ERVL-MaLR|MLT1G1	+	chr16	29760777	29786619	STRG.110443.5	+	29760777,29779259,29779504,29780103,29784922,29785587	29760949,29779321,29779637,29780637,29785492,29786619	0.975290
Peyers_patch_male_adult_54_years	chr4	851139	851140	851139	-	High_confidence	18	20	20	1.734691	3.065957	chr4	851102	851393	SINE|Alu|AluJb	-	chr4	849275	851673	GAK|ENST00000502799.1	-	849275,849891	849774,851673	1.000000
Peyers_patch_male_adult_54_years	chr7	87519338	87519416	87519363	-	High_confidence	9	9	59	5.117339	4.620936	chr7	87519184	87519318	SINE|5S-Deu-L2|AmnSINE1	-	chr7	87505901	87518963	ABCB1|ENST00000475929.5	-	87505901,87509274,87515230,87516508,87518880	87506043,87509481,87515428,87516665,87518963	0.949153
Peyers_patch_male_adult_54_years	chr19	40751802	40751834	40751802	-	High_confidence	126	136	321	27.841793	5.439368	chr19	40751529	40751903	LINE|L2|L2b	+	chr19	40740917	40751812	STRG.123330.3	-	40740917,40743904,40744558,40745129,40749480	40742770,40743981,40744683,40745198,40751812	0.993769
Peyers_patch_male_adult_54_years	chr12	69886495	69886496	69886495	+	RAMPAGE_only	8	8	8	0.693876	2.750000	chr12	69886204	69886550	LTR|ERVL-MaLR|MLT1K	-	chr12	69825087	69959731	STRG.93570.2	+	69825087,69855279,69879027,69880200,69890970,69893763,69895370,69897155,69903643,69909968,69910820,69926570,69927684,69932512,69936112,69936282,69936452,69952112,69952798,69955362,69957821,69958248,69958444	69825563,69855370,69879453,69886970,69891166,69893840,69895481,69897246,69903844,69910077,69910930,69926734,69927748,69932598,69936187,69936335,69936632,69952175,69952886,69955437,69957942,69958323,69959731	1.000000
Peyers_patch_male_adult_54_years	chr20	44377036	44377038	44377036	-	RAMPAGE_only	5	9	9	0.780611	2.641604	chr20	44376919	44377052	SINE|Alu|AluJb	+	chr20	44372745	44384671	HNF4A-AS1|ENST00000609152.1	-	44372745,44384522	44373009,44384671	0.777778
Peyers_patch_male_adult_54_years	chr8	116648828	116648848	116648841	-	RAMPAGE_only	5	5	13	1.127549	2.918296	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.923077
Peyers_patch_male_adult_54_years	chr7	47268967	47268968	47268967	-	High_confidence	11	12	16	1.387753	3.323231	chr7	47268786	47269138	LTR|ERVL-MaLR|MLT1A0	-	chr7	47267533	47269015	STRG.59459.1	-	47267533,47268715	47267702,47269015	0.500000
Peyers_patch_male_adult_54_years	chr9	133276673	133276693	133276692	-	RAMPAGE_only	6	6	16	1.387753	3.452820	chr9	133276496	133276806	LINE|L1|L1MB3	+	chr9	133250400	133275214	STRG.76900.7	-	133250400,133257408,133262098,133275161	133256356,133261374,133262168,133275214	0.562500
Peyers_patch_male_adult_54_years	chr4	73104227	73104245	73104244	-	High_confidence	18	18	34	2.948975	4.138502	chr4	73103951	73104200	DNA|hAT-Charlie|Charlie2b	-	chr4	73077368	73104398	STRG.36449.7	-	73077368,73078641,73085248,73090666,73094078,73097116,73098072,73102375,73104002	73077533,73078890,73085446,73092300,73094228,73097272,73098520,73102547,73104398	0.823529
Peyers_patch_male_adult_54_years	chr2	233012600	233012638	233012624	+	High_confidence	9	12	33	2.862240	3.913401	chr2	233012609	233012781	DNA|hAT-Tip100|MER45A	+	chr2	233012613	233015885	AC106876.1|ENST00000409905.1	+	233012613,233013139,233015706	233012969,233013247,233015885	0.818182
Peyers_patch_male_adult_54_years	chr4	13840904	13840942	13840941	-	High_confidence	6	9	27	2.341833	3.503539	chr4	13840869	13840990	SINE|MIR|MIRb	+	chr4	13837082	13841100	STRG.34320.3	-	13837082,13839433,13840760	13838736,13839590,13841100	0.555556
Peyers_patch_male_adult_54_years	chr3	37987981	37987994	37987989	+	High_confidence	213	220	676	58.632560	6.741783	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.831361
Peyers_patch_male_adult_54_years	chr5	117454949	117454953	117454949	+	High_confidence	4	4	11	0.954080	2.732159	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117454955	117472031	STRG.45485.1	+	117454955,117471901	117455454,117472031	0.545455
Peyers_patch_male_adult_54_years	chr3	170077682	170077692	170077687	+	High_confidence	9	12	33	2.862240	3.554659	chr3	170077411	170077864	LTR|ERVK|LTR22A	+	chr3	170077133	170084237	STRG.32183.3	+	170077133,170079773,170082620,170083904	170077923,170079897,170082758,170084237	1.000000
Peyers_patch_male_adult_54_years	chr16	30445873	30445877	30445873	-	High_confidence	129	189	305	26.454040	6.554669	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.954098
Peyers_patch_male_adult_54_years	chr11	67884427	67884428	67884427	+	High_confidence	35	36	50	4.336728	4.498974	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67884976	67894022	STRG.85981.2	+	67884976,67888152,67893878	67885028,67888324,67894022	0.580000
Peyers_patch_male_adult_54_years	chr7	101217578	101217595	101217594	-	High_confidence	4	4	11	0.954080	3.121928	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.909091
Peyers_patch_male_adult_54_years	chr8	144490184	144490193	144490190	+	High_confidence	5	5	15	1.301018	2.656565	chr8	144490224	144490523	SINE|Alu|AluSx1	+	chr8	144490093	144496762	PPP1R16A|ENST00000533829.1	+	144490093,144495619,144496460	144490212,144495756,144496762	0.866667
Peyers_patch_male_adult_54_years	chr8	97850234	97850281	97850255	+	High_confidence	14	16	62	5.377543	4.769715	chr8	97850001	97850255	LTR|ERVL|LTR41B	+	chr8	97850075	97852598	STRG.68595.5	+	97850075,97851396	97850442,97852598	0.661290
Peyers_patch_male_adult_54_years	chr1	159976778	159976859	159976846	+	RAMPAGE_only	6	6	46	3.989790	2.980885	chr1	159976818	159976895	SINE|Alu|FLAM_A	+	chr1	159974469	159985465	STRG.7915.7	+	159974469,159980561	159977112,159985465	0.804348
Peyers_patch_male_adult_54_years	chr16	57091106	57091115	57091106	+	High_confidence	5	5	13	1.127549	3.251629	chr16	57091095	57091300	LINE|L2|L2b	+	chr16	57092085	57119639	STRG.110916.3	+	57092085,57110707,57113287,57115475,57117495,57119194,57119560	57092790,57110922,57113467,57115550,57117567,57119282,57119639	0.538462
Peyers_patch_male_adult_54_years	chr17	4143199	4143234	4143199	+	High_confidence	35	36	67	5.811215	4.289621	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.940299
Peyers_patch_male_adult_54_years	chr16	24844767	24844807	24844806	+	High_confidence	7	7	17	1.474487	2.952820	chr16	24844650	24844843	SINE|MIR|MIR	+	chr16	24844830	24891002	STRG.109981.8	+	24844830,24846231,24858619,24862600,24869900,24872159,24875626,24877257,24884050,24890868	24845027,24846438,24858778,24862672,24870005,24872219,24875731,24877363,24884131,24891002	0.764706
Peyers_patch_male_adult_54_years	chr1	115229325	115229344	115229325	+	High_confidence	11	11	22	1.908160	3.174674	chr1	115229275	115229408	LINE|L2|L2c	-	chr1	115229332	115229913	STRG.6521.1	+	115229332	115229913	0.909091
Peyers_patch_male_adult_54_years	chr17	75742742	75742759	75742758	+	High_confidence	12	12	34	2.948975	4.160705	chr17	75742779	75742995	SINE|MIR|MIRb	+	chr17	75742423	75749045	ITGB4|ENST00000584025.1	+	75742423,75743712,75746263,75748840	75742761,75743861,75746375,75749045	0.911765
Peyers_patch_male_adult_54_years	chr10	80176123	80176132	80176123	-	RAMPAGE_only	5	5	10	0.867346	2.725481	chr10	80176083	80176485	LINE|L1|L1ME4b	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	0.800000
Peyers_patch_male_adult_54_years	chr1	43537640	43537706	43537640	+	High_confidence	14	14	83	7.198968	5.611214	chr1	43537442	43537857	LINE|L2|L2b	-	chr1	43538197	43580078	PTPRF|ENST00000372405.1	+	43538197,43545030,43553491,43553799,43569589,43578809	43538277,43545166,43553637,43553941,43569778,43580078	0.518072
Peyers_patch_male_adult_54_years	chr4	18418697	18418721	18418697	+	High_confidence	29	31	104	9.020394	5.223753	chr4	18417470	18418903	LTR|ERV1|LTR12C	-	chr4	18418148	18738391	STRG.34599.1	+	18418148,18521141,18738227	18418962,18521223,18738391	0.567308
Peyers_patch_male_adult_54_years	chr18	58091543	58091563	58091543	+	RAMPAGE_only	4	4	12	1.040815	2.663533	chr18	58091537	58091788	SINE|MIR|MIR	-	chr18	58047225	58401540	NEDD4L|NM_001144964.1	+	58047225,58165787,58245426,58248898,58252000,58315981,58322424,58323231,58324995,58328994,58330737,58333817,58335477,58341037,58341677,58342905,58349536,58350990,58357193,58364267,58365998,58367745,58370396,58373173,58383245,58385525,58387438,58389084,58390645,58391486,58396166	58047510,58165861,58245508,58248937,58252054,58316032,58322486,58323334,58325162,58329127,58330914,58333892,58335537,58341169,58341797,58343103,58349614,58351045,58357252,58364333,58366228,58367867,58370467,58373269,58383319,58385586,58387498,58389192,58390742,58391559,58401540	0.666667
Peyers_patch_male_adult_54_years	chr11	93499299	93499344	93499343	-	High_confidence	6	6	20	1.734691	2.557717	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	1.000000
Peyers_patch_male_adult_54_years	chr1	148900909	148900938	148900909	+	RAMPAGE_only	12	15	24	2.081629	4.220176	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148889783	148932725	PDE4DIP|ENST00000612094.1	+	148889783,148929196,148932112	148889894,148931923,148932725	0.666667
Peyers_patch_male_adult_54_years	chr1	43525091	43525097	43525091	+	High_confidence	370	372	627	54.382567	7.011223	chr1	43524527	43525317	LINE|L2|L2c	-	chr1	43525186	43553519	PTPRF|ENST00000496043.5	+	43525186,43528656,43538197,43545030,43553491	43525257,43528756,43538277,43545166,43553519	0.822967
Peyers_patch_male_adult_54_years	chr8	9436174	9436249	9436248	-	High_confidence	12	12	57	4.943870	4.824863	chr8	9436012	9436289	LINE|L2|L2c	-	chr8	9426905	9436180	STRG.65382.1	-	9426905,9436031	9428465,9436180	0.789474
Peyers_patch_male_adult_54_years	chr1	6208681	6208682	6208681	-	High_confidence	19	19	19	1.647957	3.221097	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
Peyers_patch_male_adult_54_years	chr5	139503241	139503242	139503241	+	High_confidence	21	21	21	1.821426	3.653757	chr5	139502942	139503773	LTR|ERV1|LTR12	+	chr5	139503272	139510240	STRG.46822.2	+	139503272,139504769,139509859	139503813,139504885,139510240	1.000000
Peyers_patch_male_adult_54_years	chr3	112332567	112332580	112332567	+	High_confidence	6	6	13	1.127549	2.792481	chr3	112332311	112332606	SINE|Alu|AluY	+	chr3	112332499	112347830	CD200|ENST00000606471.5	+	112332499,112344961,112347557	112332701,112345288,112347830	0.846154
Peyers_patch_male_adult_54_years	chr16	29963558	29963561	29963560	+	High_confidence	7	11	12	1.040815	2.732159	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963399	29968594	TMEM219|ENST00000569445.2	+	29963399,29968024	29963589,29968594	0.666667
Peyers_patch_male_adult_54_years	chr11	68180141	68180142	68180141	-	High_confidence	12	12	14	1.214284	2.645593	chr11	68180123	68180214	SINE|MIR|MIRc	+	chr11	68171118	68180165	KMT5B|ENST00000323599.10	-	68171118,68171231,68171542,68173803,68174087,68175017,68180131	68171151,68171251,68171709,68173913,68174210,68175183,68180165	1.000000
Peyers_patch_male_adult_54_years	chr10	4678115	4678177	4678146	-	High_confidence	35	36	75	6.505092	3.931026	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.933333
Peyers_patch_male_adult_54_years	chr20	3795765	3795777	3795771	+	High_confidence	6	6	16	1.387753	3.006239	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.875000
Peyers_patch_male_adult_54_years	chr17	47067498	47067534	47067498	-	High_confidence	44	47	216	18.734664	5.372498	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.930556
Peyers_patch_male_adult_54_years	chr10	34405962	34405966	34405965	-	RAMPAGE_only	16	17	27	2.341833	4.014147	chr10	34405665	34405965	LTR|ERVL|LTR40b	-	chr10	34312263	34426731	PARD3|ENST00000544292.5	-	34312263,34317106,34331116,34336198,34337277,34341626,34347964,34359146,34360070,34374873,34377966,34382539,34384128,34399329,34401825,34426684	34312382,34317338,34331344,34336243,34337426,34341816,34348115,34359317,34360259,34375002,34378106,34382922,34384254,34399413,34401917,34426731	0.592593
Peyers_patch_male_adult_54_years	chr5	171400148	171400175	171400148	+	High_confidence	2	2	12	1.040815	2.663533	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171400785	171405732	NPM1|ENST00000519955.1	+	171400785,171405301	171400925,171405732	0.583333
Peyers_patch_male_adult_54_years	chr21	39657326	39657337	39657331	+	High_confidence	17	17	47	4.076524	4.371379	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657326	39662889	B3GALT5|ENST00000380618.5	+	39657326,39659752,39660559	39657599,39659912,39662889	0.617021
Peyers_patch_male_adult_54_years	chr22	37580223	37580224	37580223	-	High_confidence	7	7	7	0.607142	2.521641	chr22	37580197	37580334	SINE|MIR|MIR3	+	chr22	37570245	37580080	LGALS2|ENST00000215886.5	-	37570245,37570575,37571848,37579899	37570412,37570735,37571931,37580080	1.000000
Peyers_patch_male_adult_54_years	chr7	99671771	99671807	99671806	-	RAMPAGE_only	4	4	9	0.780611	3.169925	chr7	99671798	99672025	LINE|L1|L1MD2	+	chr7	99648197	99676576	CYP3A5|ENST00000469887.5	-	99648197,99650072,99652552,99660498,99662815,99665165,99666600,99666951,99672579,99672783,99674532,99676114	99648400,99650232,99652779,99660659,99664095,99665314,99666689,99667065,99672698,99672915,99674585,99676576	0.555556
Peyers_patch_male_adult_54_years	chr10	105644347	105644368	105644347	+	High_confidence	24	25	45	3.903055	4.817053	chr10	105644158	105644712	LTR|ERVL|MLT2B3	+	chr10	105644355	105683500	STRG.82516.1	+	105644355,105663803,105677192	105644626,105663936,105683500	0.733333
Peyers_patch_male_adult_54_years	chr2	28600817	28600839	28600838	+	RAMPAGE_only	5	5	12	1.040815	2.584963	chr2	28600862	28601098	LINE|CR1|L3	+	chr2	28601886	28618452	PLB1|ENST00000479065.5	+	28601886,28602820,28606495,28614030,28617726,28618340	28601964,28602921,28606567,28614096,28617787,28618452	0.500000
Peyers_patch_male_adult_54_years	chr2	240022172	240022216	240022172	-	RAMPAGE_only	8	8	26	2.255098	3.613337	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.961538
Peyers_patch_male_adult_54_years	chr2	191682512	191682539	191682512	+	RAMPAGE_only	2	2	8	0.693876	2.500000	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191686157	STRG.21446.9	+	191678989,191681945,191682491,191684229,191685598	191679128,191682017,191683804,191684296,191686157	1.000000
Peyers_patch_male_adult_54_years	chr9	111570092	111570125	111570092	-	RAMPAGE_only	2	2	10	0.867346	2.721928	chr9	111569760	111570075	LINE|L2|L2a	-	chr9	111562972	111591293	STRG.75721.10	-	111562972,111564156,111570090,111574733,111578795,111583471,111585997,111589263	111563231,111564262,111570209,111574842,111578951,111583589,111586165,111591293	0.900000
Peyers_patch_male_adult_54_years	chr16	21048703	21048704	21048703	-	RAMPAGE_only	35	38	38	3.295913	4.418723	chr16	21042672	21048703	LINE|L1|L1PA2	-	chr16	20996858	21063000	DNAH3|ENST00000572640.5	-	20996858,21000223,21003103,21019623,21021970,21024595,21027026,21031044,21033973,21036713,21037760,21039851,21042026,21049568,21049909,21051669,21054419,21058085,21060263,21062481,21062771	20997462,21000518,21003207,21019869,21022100,21024701,21027127,21031286,21034085,21036848,21037980,21039943,21042203,21049682,21050018,21051868,21054534,21058196,21060356,21062683,21063000	0.921053
Peyers_patch_male_adult_54_years	chr7	107253084	107253095	107253084	-	High_confidence	8	11	23	1.994895	4.095795	chr7	107252247	107253175	LINE|L1|L1MEf	+	chr7	107202563	107253085	STRG.62415.4	-	107202563,107210525,107211098,107230614,107236449,107248395,107253047	107203630,107210605,107211225,107230691,107236687,107248499,107253085	0.739130
Peyers_patch_male_adult_54_years	chr12	31121301	31121326	31121301	-	RAMPAGE_only	4	4	13	1.127549	2.625815	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.846154
Peyers_patch_male_adult_54_years	chr22	46171300	46171385	46171384	+	High_confidence	24	25	187	16.219362	5.925867	chr22	46171297	46171902	LINE|L2|L2a	-	chr22	46171331	46235403	STRG.130727.2	+	46171331,46176752,46188722,46198341,46215172,46218262,46219811,46231791,46235132	46176144,46176836,46188822,46198591,46215333,46218401,46220014,46232239,46235403	0.914439
Peyers_patch_male_adult_54_years	chr14	106845738	106845817	106845738	+	High_confidence	5	7	32	2.775506	4.163910	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106845603	106846367	STRG.104064.1	+	106845603	106846367	0.750000
Peyers_patch_male_adult_54_years	chr2	240606508	240606538	240606508	+	RAMPAGE_only	6	6	17	1.474487	3.327820	chr2	240606494	240607081	LINE|L2|L2b	-	chr2	240605444	240631170	STRG.23488.5	+	240605444,240606386,240616387,240616975,240618441,240618887,240629948	240605570,240606612,240616511,240617393,240618496,240619031,240631170	0.705882
Peyers_patch_male_adult_54_years	chr6	56876095	56876144	56876135	-	RAMPAGE_only	84	110	353	30.617299	6.312115	chr6	56876105	56876750	LINE|L2|L2a	+	chr6	56614463	56851951	DST|ENST00000520645.5	-	56614463,56624529,56625156,56627203,56627998,56629249,56630244,56631210,56631882,56632853,56634131,56634461,56634800,56635588,56636556,56639258,56639449,56639695,56639928,56640142,56641946,56642409,56645865,56646086,56648569,56650925,56651131,56670640,56699652,56701887,56704279,56735227,56851396,56851787	56614484,56624628,56625264,56627287,56628161,56629443,56630383,56631389,56632040,56633037,56634258,56634616,56634953,56635714,56636652,56639363,56639611,56639773,56640057,56640605,56642101,56642503,56645993,56646182,56648689,56651032,56651244,56670807,56699745,56701965,56704369,56735289,56851604,56851951	0.827195
Peyers_patch_male_adult_54_years	chr11	624357	624377	624376	-	High_confidence	9	9	22	1.908160	3.821928	chr11	624236	624405	SINE|MIR|MIR1_Amn	-	chr11	617255	624932	CDHR5|ENST00000531177.5	-	617255,617953,618598,619305,619473,619680,620066,620295,621079,621344,621561,621811,624212,624556,624817	617770,618111,619180,619390,619587,619881,620164,620386,621250,621455,621663,621904,624416,624732,624932	0.818182
Peyers_patch_male_adult_54_years	chr11	67647518	67647519	67647518	-	High_confidence	15	15	15	1.301018	3.056565	chr11	67647352	67647482	SINE|MIR|MIR1_Amn	-	chr11	67642700	67647583	ACY3|ENST00000529256.1	-	67642700,67644759,67645044,67645286,67645691,67646807,67647515	67642939,67644869,67645152,67645380,67645887,67646925,67647583	1.000000
Peyers_patch_male_adult_54_years	chr19	9140393	9140428	9140393	+	High_confidence	63	63	153	13.270387	5.530853	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.862745
Peyers_patch_male_adult_54_years	chr3	124938154	124938155	124938154	-	RAMPAGE_only	10	10	10	0.867346	2.646439	chr3	124938000	124938162	LTR|ERVL|LTR79	+	chr3	124905441	124934751	MUC13|ENST00000616727.4	-	124905441,124908146,124910414,124912103,124913110,124913561,124916316,124920233,124922196,124923526,124927531,124934660	124906742,124908348,124910499,124912141,124913240,124913681,124916480,124920289,124922303,124923649,124927993,124934751	1.000000
Peyers_patch_male_adult_54_years	chr9	89479889	89479890	89479889	-	High_confidence	96	96	100	8.673456	4.528814	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	0.930000
Peyers_patch_male_adult_54_years	chr3	124631226	124631243	124631242	+	RAMPAGE_only	13	14	28	2.428568	3.940760	chr3	124631189	124632228	LINE|L2|L2a	+	chr3	124584681	124650915	KALRN|ENST00000454902.1	+	124584681,124632419,124633848,124650807	124584906,124632703,124633953,124650915	0.892857
Peyers_patch_male_adult_54_years	chr20	44355234	44355256	44355234	-	High_confidence	22	23	66	5.724481	4.302130	chr20	44355193	44355255	SINE|MIR|MIR	+	chr20	44347551	44355185	AL117382.1|ENST00000438702.1	-	44347551,44350619,44351867,44355018	44347818,44350856,44351950,44355185	0.969697
Peyers_patch_male_adult_54_years	chr1	12572757	12572760	12572759	-	RAMPAGE_only	4	6	9	0.780611	2.641604	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	1.000000
Peyers_patch_male_adult_54_years	chr7	7566514	7566531	7566514	-	High_confidence	3	3	16	1.387753	3.625000	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.750000
Peyers_patch_male_adult_54_years	chr17	50271485	50271488	50271485	+	High_confidence	145	146	250	21.683639	6.018506	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	0.976000
Peyers_patch_male_adult_54_years	chr2	174410337	174410372	174410371	+	High_confidence	2	2	6	0.520407	2.584963	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.833333
Peyers_patch_male_adult_54_years	chr7	104926544	104926545	104926544	-	High_confidence	15	17	17	1.474487	3.292770	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104914498	104926617	STRG.62107.2	-	104914498,104917559,104920384,104926452	104915827,104917980,104920425,104926617	0.529412
Peyers_patch_male_adult_54_years	chr4	4269609	4269614	4269609	-	High_confidence	20	22	50	4.336728	3.428232	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.960000
Peyers_patch_male_adult_54_years	chr7	104926626	104926646	104926640	-	High_confidence	24	28	86	7.459172	5.090413	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104911915	104926630	LHFPL3-AS2|ENST00000453666.2	-	104911915,104915705,104917559,104920384,104926452	104912076,104915827,104917980,104920425,104926630	0.813953
Peyers_patch_male_adult_54_years	chr19	38820398	38820402	38820401	+	High_confidence	6	6	13	1.127549	2.873141	chr19	38820408	38820631	SINE|MIR|MIR	+	chr19	38820165	38823223	AC104534.1|ENST00000594558.1	+	38820165,38822984	38820492,38823223	0.692308
Peyers_patch_male_adult_54_years	chr5	131224142	131224157	131224156	-	High_confidence	17	17	35	3.035709	3.990017	chr5	131223718	131224171	LINE|L2|L2-3_Crp	+	chr5	131209999	131224142	STRG.46272.1	-	131209999,131223948	131210153,131224142	0.571429
Peyers_patch_male_adult_54_years	chr19	5848767	5848772	5848771	-	High_confidence	16	16	42	3.642851	4.014358	chr19	5847625	5849489	LTR|ERV1|HERVH-int	+	chr19	5844825	5848771	FUT3|ENST00000587183.1	-	5844825,5846425,5848739	5844851,5846966,5848771	0.571429
Peyers_patch_male_adult_54_years	chr6	137218725	137218794	137218725	-	High_confidence	7	7	20	1.734691	3.421928	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.800000
Peyers_patch_male_adult_54_years	chr4	105556392	105556427	105556409	+	RAMPAGE_only	12	12	49	4.249993	4.711709	chr4	105556273	105556541	LINE|L2|L2c	-	chr4	105552621	105680913	ARHGEF38|ENST00000420470.2	+	105552621,105589247,105613383,105630897,105636402,105645187,105648548,105654064,105655602,105659053,105666176,105667128,105667443,105677751	105552961,105589435,105613507,105631045,105636420,105645387,105648682,105654169,105655722,105659365,105666320,105667327,105667703,105680913	0.510204
Peyers_patch_male_adult_54_years	chr1	162419815	162419881	162419842	+	High_confidence	25	34	118	10.234678	5.495723	chr1	162419359	162419942	LTR|ERVK|LTR14C	+	chr1	162419846	162446566	STRG.8102.1	+	162419846,162444618,162445548	162420518,162444691,162446566	0.915254
Peyers_patch_male_adult_54_years	chr3	155665176	155665186	155665176	-	RAMPAGE_only	4	4	12	1.040815	2.584963	chr3	155664915	155665290	LTR|ERVL-MaLR|MLT1J2	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	1.000000
Peyers_patch_male_adult_54_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	6	6	6	0.520407	2.584963	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
Peyers_patch_male_adult_54_years	chr3	136625270	136625271	136625270	-	RAMPAGE_only	32	34	42	3.642851	4.284901	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.833333
Peyers_patch_male_adult_54_years	chr3	135965673	135965749	135965748	+	High_confidence	12	12	102	8.846925	5.158669	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.990196
Peyers_patch_male_adult_54_years	chr12	100410563	100410618	100410617	+	High_confidence	271	280	1138	98.703926	6.245151	chr12	100410510	100410676	SINE|Alu|AluSx1	+	chr12	100410620	100420089	SLC17A8|ENST00000552697.1	+	100410620,100412769,100418028,100419814	100410699,100412880,100418156,100420089	0.727592
Peyers_patch_male_adult_54_years	chr4	23762892	23762927	23762926	+	High_confidence	33	42	132	11.448961	5.390635	chr4	23762717	23763262	LTR|ERVL|MLT2A2	+	chr4	23762926	23768625	AC093607.1|ENST00000499715.2	+	23762926,23768318	23763178,23768625	0.924242
Peyers_patch_male_adult_54_years	chr9	121313981	121314021	121314020	+	RAMPAGE_only	21	21	64	5.551012	4.254592	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.953125
Peyers_patch_male_adult_54_years	chr12	71696047	71696056	71696047	+	High_confidence	5	5	12	1.040815	2.845351	chr12	71696034	71696153	SINE|Alu|AluJo	+	chr12	71696070	71697408	STRG.93665.5	+	71696070,71696435,71697279	71696136,71696573,71697408	0.666667
Peyers_patch_male_adult_54_years	chr5	140700445	140700452	140700445	+	High_confidence	103	133	256	22.204047	4.453135	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.984375
Peyers_patch_male_adult_54_years	chr5	140655930	140655987	140655986	+	RAMPAGE_only	7	7	24	2.081629	3.938722	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.791667
Peyers_patch_male_adult_54_years	chr2	240617012	240617013	240617012	+	RAMPAGE_only	16	16	19	1.647957	3.115834	chr2	240616628	240617072	LTR|ERVL-MaLR|MLT1F2	+	chr2	240605444	240631170	STRG.23488.5	+	240605444,240606386,240616387,240616975,240618441,240618887,240629948	240605570,240606612,240616511,240617393,240618496,240619031,240631170	1.000000
Peyers_patch_male_adult_54_years	chr6	31869725	31869727	31869726	-	RAMPAGE_only	3	5	7	0.607142	2.521641	chr6	31869703	31869997	SINE|Alu|AluY	+	chr6	31866058	31871202	SLC44A4|ENST00000479777.1	-	31866058,31869154,31869544,31870811	31866126,31869257,31869637,31871202	1.000000
Peyers_patch_male_adult_54_years	chr22	39021125	39021161	39021155	+	High_confidence	6	6	19	1.647957	2.925853	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.947368
Peyers_patch_male_adult_54_years	chr1	19384882	19384889	19384882	-	RAMPAGE_only	19	22	41	3.556117	4.560667	chr1	19384800	19385021	LINE|L2|L2c	+	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.536585
Peyers_patch_male_adult_54_years	chr9	113375464	113375495	113375494	-	High_confidence	4	4	9	0.780611	2.725481	chr9	113375358	113375529	SINE|MIR|MIR3	-	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	1.000000
Peyers_patch_male_adult_54_years	chr8	97931047	97931048	97931047	+	High_confidence	7	7	10	0.867346	2.503258	chr8	97931029	97931087	LINE|RTE-BovB|MamRTE1	+	chr8	97931340	98036214	MATN2|ENST00000518154.5	+	97931340,97941776,97978885,97994479,98003660,98007104,98007478,98016539,98017993,98021204,98027415,98030461,98032245,98033098,98033560,98035656	97931522,97941899,97979008,97994602,98003783,98007227,98007601,98016662,98018116,98021327,98027829,98030614,98032317,98033176,98033659,98036214	0.600000
Peyers_patch_male_adult_54_years	chr16	89103414	89103444	89103414	+	High_confidence	6	6	28	2.428568	3.526693	chr16	89103244	89103438	LTR|ERVL-MaLR|MLT1D	-	chr16	89102695	89122832	ACSF3|ENST00000543676.1	+	89102695,89112091,89114338,89120800,89122373	89102759,89112246,89114487,89120913,89122832	0.928571
Peyers_patch_male_adult_54_years	chr1	84297935	84297943	84297935	-	RAMPAGE_only	29	32	72	6.244888	5.100038	chr1	84297928	84298031	SINE|MIR|MIRc	+	chr1	84294402	84299240	STRG.5097.1	-	84294402,84299092	84298132,84299240	0.958333
Peyers_patch_male_adult_54_years	chr2	85354337	85354343	85354337	-	High_confidence	6	7	16	1.387753	2.952820	chr2	85354216	85354326	SINE|MIR|MIR1_Amn	-	chr2	85349431	85354506	RETSAT|ENST00000409984.2	-	85349431,85350039,85350779,85354335	85349581,85350241,85351021,85354506	0.750000
Peyers_patch_male_adult_54_years	chr4	132262933	132262955	132262933	+	RAMPAGE_only	3	3	11	0.954080	2.646439	chr4	132262711	132263100	LTR|ERVL-MaLR|MSTA	+	chr4	132295528	132295758	STRG.38895.1	+	132295528	132295758	0.818182
Peyers_patch_male_adult_54_years	chr5	100090464	100090491	100090464	-	RAMPAGE_only	3	3	8	0.693876	2.750000	chr5	100090327	100090684	LTR|ERVL-MaLR|THE1B	-	chr5	100062274	100067954	AC092278.1|ENST00000621951.1	-	100062274,100066007,100066238,100066661,100067766	100062359,100066154,100066417,100066807,100067954	0.625000
Peyers_patch_male_adult_54_years	chr15	77058514	77058556	77058534	-	RAMPAGE_only	11	11	37	3.209179	4.260067	chr15	77058288	77058697	LINE|L2|L2c	+	chr15	77046059	77071122	TSPAN3|ENST00000561277.5	-	77046059,77052384,77052776,77054177,77055788,77056063,77071004	77046927,77052468,77052929,77054279,77055863,77056255,77071122	0.567568
Peyers_patch_male_adult_54_years	chr1	206929357	206929496	206929357	-	RAMPAGE_only	166	166	358	31.050971	5.781919	chr1	206929265	206929570	SINE|Alu|AluY	+	chr1	206928517	206946466	PIGR|ENST00000356495.4	-	206928517,206931496,206931670,206932455,206932985,206934419,206935485,206937094,206939118,206940488,206946335	206930413,206931555,206931802,206932577,206933166,206934746,206935818,206937751,206939463,206940584,206946466	1.000000
Peyers_patch_male_adult_54_years	chr11	67884995	67884996	67884995	+	High_confidence	25	25	37	3.209179	3.840083	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67884976	67894022	STRG.85981.2	+	67884976,67888152,67893878	67885028,67888324,67894022	0.648649
Peyers_patch_male_adult_54_years	chr10	105644500	105644538	105644537	+	High_confidence	15	15	49	4.249993	4.639721	chr10	105644158	105644712	LTR|ERVL|MLT2B3	+	chr10	105644355	105683500	STRG.82516.1	+	105644355,105663803,105677192	105644626,105663936,105683500	0.693878
Peyers_patch_male_adult_54_years	chr18	58088273	58088287	58088273	+	RAMPAGE_only	4	4	13	1.127549	2.918296	chr18	58087897	58088355	LTR|ERVL-MaLR|MLT1F	-	chr18	58047225	58401540	NEDD4L|NM_001144964.1	+	58047225,58165787,58245426,58248898,58252000,58315981,58322424,58323231,58324995,58328994,58330737,58333817,58335477,58341037,58341677,58342905,58349536,58350990,58357193,58364267,58365998,58367745,58370396,58373173,58383245,58385525,58387438,58389084,58390645,58391486,58396166	58047510,58165861,58245508,58248937,58252054,58316032,58322486,58323334,58325162,58329127,58330914,58333892,58335537,58341169,58341797,58343103,58349614,58351045,58357252,58364333,58366228,58367867,58370467,58373269,58383319,58385586,58387498,58389192,58390742,58391559,58401540	0.692308
Peyers_patch_male_adult_54_years	chr11	121586090	121586162	121586131	+	RAMPAGE_only	3	3	23	1.994895	3.882045	chr11	121585554	121586209	LINE|L1|L1ME4b	-	chr11	121576837	121629678	SORL1|ENST00000534286.5	+	121576837,121577280,121583457,121586221,121588019,121589258,121590039,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121577038,121577400,121583583,121586329,121588151,121589390,121590174,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121629678	0.739130
Peyers_patch_male_adult_54_years	chr3	155664980	155665010	155664994	-	RAMPAGE_only	5	5	15	1.301018	2.872906	chr3	155664915	155665290	LTR|ERVL-MaLR|MLT1J2	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	1.000000
Peyers_patch_male_adult_54_years	chr1	33021381	33021417	33021416	-	High_confidence	13	13	31	2.688771	3.913401	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010518	33021690	STRG.2187.4	-	33010518,33014521,33021366,33021592	33013402,33014594,33021461,33021690	1.000000
Peyers_patch_male_adult_54_years	chr7	134527596	134527597	134527596	+	High_confidence	1905	1961	2216	192.203778	7.360644	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.986462
Peyers_patch_male_adult_54_years	chr2	61962607	61962618	61962617	+	RAMPAGE_only	4	4	13	1.127549	3.085055	chr2	61962268	61962878	LTR|ERVL|MER77B	+	chr2	61905646	62136247	COMMD1|ENST00000311832.5	+	61905646,62000700,62135830	61905858,62000982,62136247	0.769231
Peyers_patch_male_adult_54_years	chrX	44225798	44225803	44225802	-	High_confidence	9	9	19	1.647957	3.070847	chrX	44225702	44225811	SINE|MIR|MIR3	-	chrX	44147881	44225756	EFHC2|ENST00000343571.3	-	44147881,44163921,44176291,44178366,44225684	44148896,44164027,44176384,44178564,44225756	0.894737
Peyers_patch_male_adult_54_years	chr16	2757801	2757815	2757801	+	High_confidence	12	12	49	4.249993	4.171260	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
Peyers_patch_male_adult_54_years	chrX	118727199	118727231	118727199	+	High_confidence	4	5	17	1.474487	3.572469	chrX	118727146	118727201	SINE|MIR|MIRc	-	chrX	118727106	118794539	STRG.134953.2	+	118727106,118741016,118746953,118749657,118758054,118761137,118766529,118766843,118773878,118776426,118791761	118727362,118741156,118747092,118749778,118758242,118761289,118766577,118766976,118773975,118776511,118794539	1.000000
Peyers_patch_male_adult_54_years	chr4	77399892	77399908	77399892	-	RAMPAGE_only	16	17	32	2.775506	4.030639	chr4	77399784	77400204	LTR|ERVK|LTR3	-	chr4	77394490	77494286	AC092674.1|ENST00000513871.1	-	77394490,77399592,77494164	77394737,77399794,77494286	0.531250
Peyers_patch_male_adult_54_years	chr12	8696637	8696675	8696646	+	High_confidence	3	4	17	1.474487	3.375000	chr12	8696484	8696683	SINE|MIR|MIR	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.705882
Peyers_patch_male_adult_54_years	chr9	113508354	113508364	113508363	+	RAMPAGE_only	7	7	15	1.301018	3.521641	chr9	113508286	113508373	LINE|CR1|L3	+	chr9	113505261	113542091	RGS3|ENST00000374136.5	+	113505261,113506387,113507286,113508540,113514457,113517540,113522929,113529220,113536795,113541319	113505523,113506493,113507638,113508580,113514654,113517624,113523041,113529264,113536918,113542091	0.733333
Peyers_patch_male_adult_54_years	chr5	39448700	39448723	39448700	-	High_confidence	149	208	455	39.464223	5.916652	chr5	39448488	39449045	LTR|ERVL|MLT2B3	-	chr5	39371677	39448716	STRG.41915.2	-	39371677,39375013,39375996,39376649,39381453,39385310,39388304,39388798,39389096,39389851,39390443,39392364,39393253,39394229,39448575	39373425,39375084,39376106,39377282,39383271,39385428,39388367,39388852,39389123,39389932,39390575,39392463,39393393,39394421,39448716	0.865934
Peyers_patch_male_adult_54_years	chr14	94735759	94735760	94735759	-	RAMPAGE_only	12	12	12	1.040815	3.418296	chr14	94735486	94735994	LTR|ERVL-MaLR|MLT1H1	+	chr14	94378375	94390693	SERPINA1|ENST00000393088.8	-	94378375,94379463,94380870,94382591,94388559,94388800,94390456	94378640,94379611,94381141,94383241,94388663,94389010,94390693	1.000000
Peyers_patch_male_adult_54_years	chr19	49086520	49086547	49086546	+	High_confidence	18	19	47	4.076524	4.479497	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	1.000000
Peyers_patch_male_adult_54_years	chr19	35115822	35115923	35115834	+	High_confidence	54	55	626	54.295832	7.168489	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.809904
Peyers_patch_male_adult_54_years	chr3	134485443	134485473	134485443	-	High_confidence	3	3	9	0.780611	2.750000	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.666667
Peyers_patch_male_adult_54_years	chr6	26257496	26257498	26257496	+	High_confidence	197	213	290	25.153021	6.503210	chr6	26257218	26257617	LTR|ERVK|LTR22A	+	chr6	26257466	26262167	STRG.49964.1	+	26257466,26261371	26260407,26262167	0.993103
Peyers_patch_male_adult_54_years	chr9	39810023	39810046	39810033	-	High_confidence	13	14	39	3.382648	4.012287	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.589744
Peyers_patch_male_adult_54_years	chr2	43800342	43800369	43800342	+	High_confidence	21	22	69	5.984684	4.808997	chr2	43800298	43800421	DNA|TcMar-Mariner|MARNA	-	chr2	43800279	43809997	STRG.14507.5	+	43800279,43800840,43801638,43804641,43805153,43809704	43800432,43800917,43801709,43804739,43805246,43809997	0.811594
Peyers_patch_male_adult_54_years	chr6	70394883	70394884	70394883	+	High_confidence	62	63	89	7.719376	5.556864	chr6	70394625	70395013	LTR|ERV1|MER48	+	chr6	70394886	70399417	AL365226.2|ENST00000418403.1	+	70394886,70395229,70399214	70395043,70395266,70399417	0.674157
Peyers_patch_male_adult_54_years	chr11	35734949	35734982	35734949	+	RAMPAGE_only	5	7	16	1.387753	3.280639	chr11	35734841	35734967	SINE|MIR|MIRc	-	chr11	35724255	35806621	TRIM44|ENST00000532066.1	+	35724255,35725923,35735425,35806357	35724368,35726163,35735445,35806621	0.500000
Peyers_patch_male_adult_54_years	chr9	117466030	117466031	117466030	-	High_confidence	8	9	11	0.954080	2.721928	chr9	117466000	117466092	LINE|L2|L2c	+	chr9	117462293	117466260	AL445644.1|ENST00000436524.1	-	117462293,117465934	117462718,117466260	0.545455
Peyers_patch_male_adult_54_years	chr3	58529024	58529025	58529024	-	High_confidence	5	5	8	0.693876	2.521641	chr3	58529017	58529296	DNA|TcMar-Tigger|MER46C	+	chr3	58526504	58529206	ACOX2|ENST00000459888.1	-	58526504,58528793	58526656,58529206	0.500000
Peyers_patch_male_adult_54_years	chr1	88647466	88647491	88647478	+	High_confidence	22	22	79	6.852030	4.646562	chr1	88647368	88647565	LTR|ERVL-MaLR|MLT1O	-	chr1	88647487	88762093	STRG.5265.5	+	88647487,88740987,88760221	88647599,88741288,88762093	0.734177
Peyers_patch_male_adult_54_years	chr6	31186398	31186399	31186398	-	High_confidence	9	11	13	1.127549	2.968919	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31176476	31186514	STRG.50294.2	-	31176476,31182882	31177899,31186514	1.000000
Peyers_patch_male_adult_54_years	chr7	154928483	154928504	154928503	+	High_confidence	8	8	22	1.908160	3.446439	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.863636
Peyers_patch_male_adult_54_years	chr20	37345083	37345131	37345107	+	High_confidence	19	21	94	8.153048	5.533847	chr20	37345047	37345146	SINE|MIR|MIR3	+	chr20	37344684	37405432	SRC|NM_005417.4	+	37344684,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.574468
Peyers_patch_male_adult_54_years	chr15	80059918	80059933	80059918	+	High_confidence	56	71	147	12.749980	5.269102	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.959184
prostate_gland_male_adult_37_years	chr16	69996417	69996418	69996417	-	RAMPAGE_only	24	26	29	2.644751	3.869331	chr16	69996297	69996477	SINE|MIR|MIRb	+	chr16	69993019	70021930	PDXDC2P-NPIPB14P|ENST00000525331.5	-	69993019,69996068,69996389,70010750,70011840,70014103,70018046,70021823	69993248,69996226,69996468,70010856,70011929,70014167,70018097,70021930	0.827586
prostate_gland_male_adult_37_years	chr6	76774949	76775007	76774949	+	High_confidence	5	5	23	2.097561	3.788755	chr6	76774716	76775166	LTR|ERVL|MER70A	+	chr6	76774982	76775860	AL590426.2|ENST00000607287.1	+	76774982,76775167	76775075,76775860	0.565217
prostate_gland_male_adult_37_years	chr17	28234030	28234062	28234053	-	RAMPAGE_only	11	11	66	6.019089	4.587109	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	1.000000
prostate_gland_male_adult_37_years	chr6	3719778	3719779	3719778	-	High_confidence	13	13	17	1.550371	3.175123	chr6	3719558	3721329	LTR|ERV1|LTR12C	-	chr6	3589934	3720099	STRG.47400.1	-	3589934,3594280,3595566,3719362	3589951,3594535,3595661,3720099	0.882353
prostate_gland_male_adult_37_years	chr22	37631052	37631083	37631082	+	High_confidence	7	7	19	1.732768	3.471354	chr22	37631132	37631272	SINE|MIR|MIR1_Amn	+	chr22	37630667	37632677	GGA1|ENST00000460957.1	+	37630667,37631995,37632404,37632600	37631099,37632165,37632515,37632677	0.842105
prostate_gland_male_adult_37_years	chr13	98328204	98328228	98328216	+	High_confidence	4	4	18	1.641570	3.454822	chr13	98327733	98328401	LTR|ERV1|MER72	-	chr13	98328190	98343812	FARP1|ENST00000601361.1	+	98328190,98328535,98343761	98328324,98328807,98343812	0.555556
prostate_gland_male_adult_37_years	chr6	4724884	4724885	4724884	-	High_confidence	35	35	36	3.283139	4.307715	chr6	4724469	4725869	LTR|ERV1|LTR12C	-	chr6	4714097	4724885	AL356747.1|ENST00000643972.1	-	4714097,4718526,4724410	4714908,4718594,4724885	0.861111
prostate_gland_male_adult_37_years	chr6	4725426	4725427	4725426	+	RAMPAGE_only	4	4	7	0.638388	2.521641	chr6	4724469	4725869	LTR|ERV1|LTR12C	-	chr6	4733216	4892347	STRG.47655.6	+	4733216,4734761,4891712	4733248,4734844,4892347	0.571429
prostate_gland_male_adult_37_years	chr10	18584417	18584440	18584417	-	RAMPAGE_only	6	6	16	1.459173	2.827820	chr10	18583820	18584476	LTR|ERV1|LTR36	+	chr10	18546061	18551822	NSUN6|ENST00000493816.1	-	18546061,18548111,18551717	18546145,18548237,18551822	0.500000
prostate_gland_male_adult_37_years	chr2	173282036	173282037	173282036	-	High_confidence	30	30	30	2.735949	3.923231	chr2	173281737	173283149	LTR|ERV1|LTR12C	-	chr2	173197711	173282036	MAP3K20-AS1|ENST00000423106.2	-	173197711,173207546,173209646,173212668,173214279,173215625,173271510,173281681	173198824,173207658,173209945,173212791,173214496,173215836,173271618,173282036	0.800000
prostate_gland_male_adult_37_years	chr7	18851390	18851391	18851390	+	High_confidence	6	6	8	0.729587	2.521641	chr7	18851203	18851570	LTR|ERVL-MaLR|THE1D	+	chr7	18851399	18996343	HDAC9|ENST00000496026.1	+	18851399,18874477,18935808,18954145,18975805,18996022	18851452,18874596,18935942,18954230,18975953,18996343	0.875000
prostate_gland_male_adult_37_years	chr19	15604958	15604959	15604958	+	RAMPAGE_only	10	11	11	1.003181	2.663533	chr19	15604142	15605349	LTR|ERVL|LTR57-int	-	chr19	15611656	15612122	RPL23AP2|ENST00000471227.3	+	15611656	15612122	1.000000
prostate_gland_male_adult_37_years	chr5	33297999	33298000	33297999	-	High_confidence	6	6	9	0.820785	2.500000	chr5	33297738	33298188	LTR|ERV1|MER48	-	chr5	33023054	33297910	AC010343.3|ENST00000510327.1	-	33023054,33263499,33297731	33023327,33263666,33297910	0.777778
prostate_gland_male_adult_37_years	chr13	63593437	63593438	63593437	+	High_confidence	125	125	149	13.588549	5.598085	chr13	63593164	63593967	LTR|ERV1|LTR12D	+	chr13	63593342	63593825	STRG.95094.1	+	63593342	63593825	0.510067
prostate_gland_male_adult_37_years	chr12	91179462	91179526	91179462	-	High_confidence	192	203	937	85.452820	7.173469	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91172527	91179495	DCN|ENST00000550099.5	-	91172527,91178341,91179361	91172868,91178585,91179495	0.505870
prostate_gland_male_adult_37_years	chr7	113593620	113593628	113593622	-	RAMPAGE_only	8	11	22	2.006363	3.084184	chr7	113593157	113594562	LTR|ERV1|LTR12C	+	chr7	113486851	113487674	STRG.60264.1	-	113486851	113487674	0.909091
prostate_gland_male_adult_37_years	chr19	27901270	27901305	27901285	+	RAMPAGE_only	6	6	26	2.371156	3.551428	chr19	27901026	27901849	LINE|L2|L2b	-	chr19	27793487	27984984	AC006504.7|ENST00000592806.1	+	27793487,27919779,27956201,27963265,27983410,27984641	27793650,27919858,27956276,27963366,27983573,27984984	0.576923
prostate_gland_male_adult_37_years	chr22	47631658	47631697	47631678	+	High_confidence	10	15	57	5.198304	4.653262	chr22	47631336	47631805	LTR|ERVL|MLT2B1	-	chr22	47631673	47855600	AL117329.1|ENST00000423737.5	+	47631673,47635179,47686199,47686574,47686802,47687140,47704588,47738433,47854910	47631886,47635353,47686312,47686695,47686938,47687206,47704747,47738576,47855600	0.789474
prostate_gland_male_adult_37_years	chr7	33351922	33351983	33351922	+	High_confidence	3	3	13	1.185578	2.661226	chr7	33351872	33352111	LTR|ERV1|LTR27B	-	chr7	33351926	33388007	BBS9|ENST00000627264.1	+	33351926,33357854,33367766,33383665,33387991	33352049,33357995,33367862,33383838,33388007	0.538462
prostate_gland_male_adult_37_years	chr16	20989114	20989115	20989114	-	High_confidence	134	134	138	12.585367	5.061692	chr16	20988699	20990207	LTR|ERV1|LTR12C	-	chr16	20941252	20989110	STRG.108462.1	-	20941252,20944495,20948482,20952432,20954812,20959178,20963283,20969791,20975232,20979329,20982720,20985048,20987304,20987692,20987941,20988735	20941543,20944663,20948637,20952549,20955057,20959404,20965425,20969990,20975415,20979546,20982886,20985715,20987448,20987849,20988065,20989110	0.905797
prostate_gland_male_adult_37_years	chr1	33021416	33021455	33021416	-	RAMPAGE_only	22	22	44	4.012726	4.202330	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.977273
prostate_gland_male_adult_37_years	chrX	135768190	135768191	135768190	-	High_confidence	17	18	20	1.823966	3.921928	chrX	135767891	135768249	LTR|ERVL|LTR41	-	chrX	135760156	135768191	CT45A3|ENST00000598716.2	-	135760156,135761633,135762107,135764275,135768107	135760409,135761727,135762356,135764450,135768191	1.000000
prostate_gland_male_adult_37_years	chr6	133088102	133088126	133088125	+	High_confidence	4	4	10	0.911983	3.169925	chr6	133087965	133088545	LTR|ERVL-MaLR|MLT1E2	+	chr6	133088127	133106198	LINC00326|ENST00000434443.1	+	133088127,133096509,133100006,133106094	133088577,133096563,133100184,133106198	0.800000
prostate_gland_male_adult_37_years	chr9	115744225	115744269	115744264	-	High_confidence	8	10	49	4.468717	4.573495	chr9	115743858	115744555	LTR|ERV1|MER50B	-	chr9	115607824	115744265	AL691420.1|ENST00000645745.1	-	115607824,115613676,115689223,115741461,115742952,115744156	115608184,115613758,115689317,115741562,115743070,115744265	0.510204
prostate_gland_male_adult_37_years	chr1	19980415	19980434	19980415	-	High_confidence	25	25	84	7.660658	5.473937	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975437	19980416	PLA2G2A|ENST00000375111.7	-	19975437,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979690,19980416	0.761905
prostate_gland_male_adult_37_years	chr19	51354400	51354412	51354400	-	High_confidence	2	2	7	0.638388	2.584963	chr19	51354373	51354482	SINE|MIR|MIR3	-	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.857143
prostate_gland_male_adult_37_years	chr12	123390709	123390761	123390760	+	High_confidence	10	10	25	2.279958	3.855389	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.920000
prostate_gland_male_adult_37_years	chr12	22376915	22376926	22376916	-	RAMPAGE_only	5	8	14	1.276776	2.873141	chr12	22376702	22377189	LTR|ERV1|LTR12C	+	chr12	22201903	22336200	ST8SIA1|ENST00000540824.5	-	22201903,22249005,22255279,22287148,22336111	22202038,22249098,22255389,22287293,22336200	0.571429
prostate_gland_male_adult_37_years	chr12	127983862	127983863	127983862	-	High_confidence	23	23	23	2.097561	3.375459	chr12	127983198	127984510	LTR|ERV1|LTR12C	+	chr12	127883988	127983891	LINC00508|NR_126452.2	-	127883988,127940573,127983066,127983801	127885105,127940735,127983125,127983891	0.913043
prostate_gland_male_adult_37_years	chr12	53173817	53173839	53173817	-	High_confidence	6	6	28	2.553553	3.930270	chr12	53173811	53174022	LINE|L1|L1MB7	-	chr12	53170070	53173790	CSAD|ENST00000424845.5	-	53170070,53170422,53171325,53171877,53173344,53173727	53170126,53170502,53171441,53171988,53173476,53173790	0.571429
prostate_gland_male_adult_37_years	chr7	112423372	112423401	112423400	+	High_confidence	5	5	21	1.915165	3.725651	chr7	112423337	112423544	SINE|MIR|MIRb	-	chr7	112423143	112475527	IFRD1|ENST00000005558.8	+	112423143,112450507,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112423432,112450782,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112475527	0.857143
prostate_gland_male_adult_37_years	chr7	6590246	6590290	6590257	+	High_confidence	5	5	35	3.191941	4.010134	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.971429
prostate_gland_male_adult_37_years	chr11	119046452	119046459	119046458	-	RAMPAGE_only	8	8	19	1.732768	3.614369	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.947368
prostate_gland_male_adult_37_years	chr2	147685627	147685628	147685627	-	High_confidence	11	11	12	1.094380	2.663533	chr2	147685312	147686798	LTR|ERV1|LTR12C	-	chr2	147685283	147685713	STRG.17268.1	-	147685283	147685713	0.500000
prostate_gland_male_adult_37_years	chr18	36122242	36122249	36122242	-	High_confidence	8	8	17	1.550371	3.202820	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.705882
prostate_gland_male_adult_37_years	chr19	58306161	58306162	58306161	+	High_confidence	5	5	8	0.729587	2.750000	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.625000
prostate_gland_male_adult_37_years	chr6	26956526	26956554	26956526	-	High_confidence	2	2	10	0.911983	2.721928	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.500000
prostate_gland_male_adult_37_years	chrX	31863218	31863259	31863218	-	RAMPAGE_only	3	3	12	1.094380	2.855389	chrX	31863061	31863362	SINE|Alu|AluYh3	+	chrX	31119220	31875373	DMD|ENST00000358062.6	-	31119220,31134101,31146290,31147274,31169442,31172347,31173538,31178668,31180369,31182737,31203960,31206581,31209497,31223046,31260954,31323597,31348555,31444480,31478105,31478982,31496787,31507280,31627672,31657989,31679374,31729630,31773959,31819974,31836717,31875187	31121930,31134194,31146414,31147518,31169601,31172413,31173604,31178805,31180481,31182904,31204118,31206667,31209699,31223121,31261016,31323658,31348634,31444627,31478374,31479103,31496944,31507453,31627862,31658144,31679586,31729748,31774192,31820083,31836819,31875373	0.583333
prostate_gland_male_adult_37_years	chr12	10363662	10363664	10363662	+	High_confidence	23	40	40	3.647933	4.065312	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363647	10380013	STRG.87319.2	+	10363647,10374034,10379701	10364033,10374136,10380013	0.850000
prostate_gland_male_adult_37_years	chr11	98070008	98070044	98070043	-	High_confidence	4	4	16	1.459173	3.327820	chr11	98069849	98070173	LTR|ERV1|MER61A	-	chr11	97942649	98069852	STRG.84845.1	-	97942649,98062304,98069816	97942764,98062474,98069852	0.812500
prostate_gland_male_adult_37_years	chr7	77018928	77018948	77018928	+	RAMPAGE_only	7	8	21	1.915165	3.100917	chr7	77018689	77019076	LTR|ERVL-MaLR|MSTA	+	chr7	77015317	77043775	STRG.58886.22	+	77015317,77039950,77041976,77043594	77015855,77040089,77042063,77043775	1.000000
prostate_gland_male_adult_37_years	chr12	10363872	10363873	10363872	+	High_confidence	7	7	10	0.911983	2.921928	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.900000
prostate_gland_male_adult_37_years	chr14	19399871	19400059	19399961	-	RAMPAGE_only	68	69	398	36.296929	5.808280	chr14	19399503	19400833	LINE|L1|L1PA12	-	chr14	19331865	19434341	STRG.96768.2	-	19331865,19333701,19333933,19335351,19337579,19368192,19375741,19381176,19398019,19404616,19409332,19413353,19414561,19416287,19421623,19424164,19425605,19426732,19428541,19428874,19433768	19331972,19333813,19334081,19335462,19341440,19368258,19376011,19381312,19403109,19404735,19409381,19413520,19414606,19416358,19421694,19424302,19425712,19426988,19428715,19428989,19434341	0.997487
prostate_gland_male_adult_37_years	chr14	81623082	81623083	81623082	-	High_confidence	41	41	44	4.012726	3.706562	chr14	81622661	81624332	LTR|ERV1|LTR12C	-	chr14	81622719	81623094	STRG.100137.1	-	81622719	81623094	0.795455
prostate_gland_male_adult_37_years	chr7	64999443	64999444	64999443	-	RAMPAGE_only	31	32	32	2.918346	4.050971	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64990808	65006653	ERV3-1|ENST00000394323.2	-	64990808,65006540	64993414,65006653	0.906250
prostate_gland_male_adult_37_years	chr1	33238555	33238590	33238586	+	High_confidence	5	8	32	2.918346	3.101747	chr1	33238604	33239002	LTR|ERVL-MaLR|MLT1B	+	chr1	33238617	33280414	STRG.1632.3	+	33238617,33238820,33270486,33276099,33276347,33280123	33238696,33238935,33270612,33276163,33276594,33280414	0.843750
prostate_gland_male_adult_37_years	chr5	133089620	133089678	133089677	+	RAMPAGE_only	18	18	33	3.009544	4.089552	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
prostate_gland_male_adult_37_years	chr8	86822483	86822484	86822483	+	RAMPAGE_only	11	12	12	1.094380	2.594907	chr8	86822298	86822668	LTR|ERVL-MaLR|THE1D	+	chr8	86866441	86939816	CNBD1|ENST00000517748.1	+	86866441,86887541,86905080,86939595	86866583,86887611,86905194,86939816	0.916667
prostate_gland_male_adult_37_years	chr1	167937013	167937075	167937013	-	High_confidence	20	21	110	10.031815	5.625963	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167918067	167937040	MPC2|ENST00000271373.8	-	167918067,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937040	0.981818
prostate_gland_male_adult_37_years	chr19	35115816	35115845	35115816	+	High_confidence	7	7	47	4.286321	4.708132	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.680851
prostate_gland_male_adult_37_years	chr17	32684271	32684272	32684271	-	High_confidence	28	31	40	3.647933	4.368109	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32653863	32684284	MYO1D|ENST00000582217.1	-	32653863,32654476,32659114,32684174	32653947,32654621,32659338,32684284	0.700000
prostate_gland_male_adult_37_years	chr3	48430189	48430190	48430189	-	High_confidence	18	19	26	2.371156	3.133938	chr3	48430133	48430258	SINE|MIR|MIRb	+	chr3	48403853	48430051	PLXNB1|ENST00000296440.10	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48430007	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48430051	0.769231
prostate_gland_male_adult_37_years	chr1	51403428	51403517	51403432	-	RAMPAGE_only	9	9	29	2.644751	3.440760	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.896552
prostate_gland_male_adult_37_years	chr20	3795750	3795772	3795750	+	High_confidence	20	20	58	5.289502	4.551845	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.982759
prostate_gland_male_adult_37_years	chr1	221714471	221714507	221714477	-	High_confidence	4	4	12	1.094380	3.084963	chr1	221714228	221714848	LTR|ERV1|LTR9	+	chr1	221701618	221714227	STRG.9293.2	-	221701618,221706094,221714176	221702677,221706466,221714227	1.000000
prostate_gland_male_adult_37_years	chr19	9140390	9140428	9140393	+	High_confidence	17	17	98	8.937435	5.091665	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.826531
prostate_gland_male_adult_37_years	chr4	41359606	41359607	41359606	+	High_confidence	11	11	11	1.003181	2.550341	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.909091
prostate_gland_male_adult_37_years	chr19	3575617	3575625	3575624	+	High_confidence	7	9	12	1.094380	3.095795	chr19	3575668	3575971	SINE|Alu|AluSx1	+	chr19	3575650	3578671	HMG20B|ENST00000487894.5	+	3575650,3576552,3576891,3577980,3578508	3576307,3576625,3577107,3578113,3578671	0.750000
prostate_gland_male_adult_37_years	chr11	321257	321271	321257	-	High_confidence	3	3	12	1.094380	2.918296	chr11	321227	321340	SINE|Alu|AluY	+	chr11	319772	321340	IFITM3|ENST00000526811.4	-	319772,320564,321223	319990,320772,321340	0.666667
prostate_gland_male_adult_37_years	chr1	209429260	209429288	209429260	+	High_confidence	29	29	65	5.927890	4.827820	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.692308
prostate_gland_male_adult_37_years	chr20	34369406	34369458	34369434	+	RAMPAGE_only	10	10	26	2.371156	3.825252	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34481176	STRG.125331.3	+	34363311,34369393,34393790,34397207,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065	34363349,34369470,34393881,34397321,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481176	1.000000
prostate_gland_male_adult_37_years	chr3	49468648	49468686	49468685	+	High_confidence	5	5	18	1.641570	2.705229	chr3	49468531	49468836	SINE|Alu|AluSx1	-	chr3	49468702	49535618	DAG1|NM_001177643.2	+	49468702,49510418,49530796	49469055,49510819,49535618	0.944444
prostate_gland_male_adult_37_years	chr4	86453161	86453232	86453202	-	High_confidence	22	30	197	17.966068	5.250070	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.898477
prostate_gland_male_adult_37_years	chr15	23757102	23757106	23757102	+	High_confidence	61	61	91	8.299047	5.357207	chr15	23756843	23757427	LTR|ERV1|LTR12_	+	chr15	23757295	23757517	STRG.101481.1	+	23757295	23757517	0.604396
prostate_gland_male_adult_37_years	chr19	34676037	34676071	34676037	-	High_confidence	15	15	26	2.371156	3.623465	chr19	34675656	34676296	LTR|ERV1|LTR12_	-	chr19	34593441	34675699	SCGB2B2|ENST00000601241.5	-	34593441,34594174,34594502,34675629	34593599,34594359,34596594,34675699	0.500000
prostate_gland_male_adult_37_years	chr11	71745875	71745936	71745875	+	High_confidence	25	25	87	7.934253	5.183761	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.965517
prostate_gland_male_adult_37_years	chr22	23536877	23536878	23536877	+	High_confidence	47	47	65	5.927890	4.770305	chr22	23536061	23537026	LTR|ERVK|LTR5_Hs	+	chr22	23536880	23539480	PCAT14|ENST00000629869.1	+	23536880,23538760	23537136,23539480	0.984615
prostate_gland_male_adult_37_years	chr19	51886821	51886822	51886821	-	RAMPAGE_only	14	15	21	1.915165	3.403989	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51878400	51887889	ZNF577|ENST00000638538.1	-	51878400,51880322,51880678,51886115,51886820,51887831	51878515,51880401,51880877,51886145,51886912,51887889	0.809524
prostate_gland_male_adult_37_years	chr6	33313223	33313238	33313223	-	High_confidence	7	7	13	1.185578	2.522055	chr6	33313036	33313184	SINE|MIR|MIR3	-	chr6	33304267	33314041	TAPBP|ENST00000437116.2	-	33304267,33304988,33313216,33313693,33314004	33304638,33305387,33313477,33313864,33314041	0.923077
prostate_gland_male_adult_37_years	chr7	128622497	128622498	128622497	+	RAMPAGE_only	10	10	12	1.094380	2.594907	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.833333
prostate_gland_male_adult_37_years	chr9	131072834	131072856	131072834	+	RAMPAGE_only	4	4	10	0.911983	2.521928	chr9	131072867	131073059	SINE|MIR|MIRb	+	chr9	131009116	131093059	LAMC3|NM_006059.3	+	131009116,131026284,131032044,131036165,131038863,131039130,131041636,131045523,131049019,131052490,131052849,131056928,131061034,131066959,131068077,131068907,131069671,131071483,131072629,131073244,131075830,131077186,131079148,131082058,131085523,131087475,131087717,131091536	131009587,131026589,131032175,131036332,131039052,131039248,131041735,131045660,131049130,131052683,131052965,131057147,131061223,131067205,131068231,131069050,131069850,131071625,131072835,131073321,131075965,131077334,131079298,131082161,131085723,131087622,131087817,131093059	1.000000
prostate_gland_male_adult_37_years	chr15	24558161	24558201	24558200	+	High_confidence	4	4	16	1.459173	3.323231	chr15	24558078	24558472	LTR|ERV1|PABL_B-int	-	chr15	24558156	24587780	PWRN1|NR_026646.1	+	24558156,24566655,24567896,24569782,24570031,24574509,24574906,24580226,24587566	24558321,24566800,24568182,24569809,24570128,24574813,24575003,24580330,24587780	0.875000
prostate_gland_male_adult_37_years	chr16	3642987	3642988	3642987	+	High_confidence	7	7	7	0.638388	2.521641	chr16	3643020	3643213	LINE|L1|L1MEg	+	chr16	3642937	3665472	DNASE1|ENST00000407479.5	+	3642937,3654960,3655372,3655848,3656101,3656637,3656998,3657186,3657719,3657905	3643036,3655044,3655520,3655937,3656185,3656753,3657111,3657341,3657816,3665472	0.857143
prostate_gland_male_adult_37_years	chr12	52118018	52118034	52118033	-	High_confidence	8	8	18	1.641570	3.616875	chr12	52116006	52118404	LTR|ERV1|HERVE-int	-	chr12	52086301	52118551	STRG.89187.4	-	52086301,52087415,52094678,52104158,52108068,52115868	52086385,52087705,52094849,52106001,52108209,52118551	0.944444
prostate_gland_male_adult_37_years	chr20	49005209	49005210	49005209	+	RAMPAGE_only	13	13	15	1.367975	2.523231	chr20	49005231	49005414	LTR|ERVL|LTR84b	+	chr20	48921889	49036693	ARFGEF2|ENST00000371917.4	+	48921889,48941198,48941863,48951322,48952704,48953555,48963829,48965871,48969146,48971119,48972325,48973144,48974765,48976015,48984728,48985407,48988303,48988490,48989284,48989555,48991039,48994450,48995782,48998192,48998335,49005069,49010231,49011923,49013563,49013830,49016279,49017248,49017495,49018883,49023050,49025312,49028529,49032048,49033022	48922010,48941229,48941987,48951469,48952884,48953790,48963898,48966023,48969277,48971354,48972425,48973284,48974874,48976199,48984840,48985613,48988388,48988662,48989436,48989684,48991198,48994598,48995882,48998233,48998505,49005221,49010404,49012084,49013694,49013960,49016415,49017387,49017550,49018998,49023181,49025481,49028668,49032166,49036693	1.000000
prostate_gland_male_adult_37_years	chr2	186963165	186963166	186963165	+	High_confidence	93	94	114	10.396608	3.889494	chr2	186962104	186963583	LTR|ERV1|LTR12C	+	chr2	186963421	186963672	STRG.19973.1	+	186963421	186963672	0.675439
prostate_gland_male_adult_37_years	chr21	28699311	28699374	28699355	-	RAMPAGE_only	6	6	27	2.462354	4.014147	chr21	28699202	28699380	LTR|ERVL-MaLR|MLT1A1	-	chr21	28439345	28674848	AF165147.1|ENST00000433310.6	-	28439345,28446289,28577218,28626584,28674646	28444809,28446472,28577380,28626676,28674848	0.888889
prostate_gland_male_adult_37_years	chrX	103766998	103767032	103766998	-	High_confidence	12	14	41	3.739131	4.521829	chrX	103766931	103767306	LTR|ERV1|LTR7	-	chrX	103764960	103767014	STRG.134929.1	-	103764960,103766783	103765154,103767014	0.536585
prostate_gland_male_adult_37_years	chr2	81985973	81985974	81985973	+	High_confidence	66	66	67	6.110287	5.042289	chr2	81984998	81986388	LTR|ERV1|LTR12C	+	chr2	81985989	81986409	STRG.14682.1	+	81985989	81986409	0.776119
prostate_gland_male_adult_37_years	chr3	78029834	78029885	78029870	-	RAMPAGE_only	6	6	53	4.833511	4.464079	chr3	78029766	78030361	LTR|ERV1|LTR12D	+	chr3	78022166	78022911	STRG.27442.1	-	78022166	78022911	0.584906
prostate_gland_male_adult_37_years	chr19	7642258	7642259	7642258	+	High_confidence	7	7	11	1.003181	2.913977	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.909091
prostate_gland_male_adult_37_years	chr3	132285531	132285570	132285557	-	High_confidence	35	44	106	9.667021	5.682772	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	132043602	132285605	STRG.30029.12	-	132043602,132044396,132284042,132285239	132043802,132044500,132284170,132285605	0.764151
prostate_gland_male_adult_37_years	chr4	46909231	46909245	46909244	-	High_confidence	13	13	24	2.188760	3.751629	chr4	46909121	46909457	LTR|ERVL|LTR79	-	chr4	46734826	46909235	COX7B2|NM_130902.2	-	46734826,46844959,46909159	46735241,46845014,46909235	0.750000
prostate_gland_male_adult_37_years	chr19	53446304	53446328	53446304	+	RAMPAGE_only	2	2	8	0.729587	2.521641	chr19	53446200	53446369	SINE|Alu|AluSz	-	chr19	53445184	53458260	ZNF761|ENST00000454407.5	+	53445184,53447145,53449511,53454649	53445275,53447283,53449638,53458260	0.875000
prostate_gland_male_adult_37_years	chr4	137943021	137943022	137943021	+	High_confidence	95	95	98	8.937435	4.149877	chr4	137941888	137943437	LTR|ERV1|LTR12C	+	chr4	137942947	137950562	STRG.38112.1	+	137942947,137950180,137950355	137943401,137950250,137950562	0.755102
prostate_gland_male_adult_37_years	chr6	6953239	6953240	6953239	+	High_confidence	23	23	23	2.097561	3.795089	chr6	6952457	6953599	LTR|ERV1|LTR12C	+	chr6	6953252	6953790	STRG.47612.1	+	6953252	6953790	0.652174
prostate_gland_male_adult_37_years	chr2	13537891	13537918	13537917	+	High_confidence	7	9	27	2.462354	3.382568	chr2	13537716	13538096	LTR|ERVL-MaLR|THE1D	+	chr2	13537651	13609308	STRG.11376.1	+	13537651,13609055	13538013,13609308	0.518519
prostate_gland_male_adult_37_years	chr4	8436023	8436026	8436025	-	RAMPAGE_only	11	16	22	2.006363	3.754442	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.545455
prostate_gland_male_adult_37_years	chr17	17955989	17956101	17956038	-	RAMPAGE_only	14	14	137	12.494169	4.060089	chr17	17955692	17957026	LTR|ERV1|LTR12C	-	chr17	17865623	17957661	STRG.112576.7	-	17865623,17866875,17869339,17879626,17882704,17884633,17893660,17898595,17907446,17955414	17866419,17866924,17869473,17879743,17882863,17884768,17893810,17898674,17907531,17957661	0.985401
prostate_gland_male_adult_37_years	chr7	119907374	119907375	119907374	-	RAMPAGE_only	9	9	9	0.820785	2.725481	chr7	119907219	119907508	LTR|ERVL-MaLR|THE1A	-	chr7	119800623	119800849	STRG.60503.1	-	119800623	119800849	0.555556
prostate_gland_male_adult_37_years	chr3	137714087	137714123	137714090	-	High_confidence	18	18	63	5.745494	4.394890	chr3	137713682	137715059	LTR|ERV1|LTR12C	-	chr3	137713684	137714130	STRG.30283.1	-	137713684	137714130	0.952381
prostate_gland_male_adult_37_years	chr10	103181328	103181329	103181328	-	High_confidence	9	10	10	0.911983	2.947703	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103169283	103181320	NT5C2|ENST00000467380.1	-	103169283,103174857,103181184	103169449,103174982,103181320	0.700000
prostate_gland_male_adult_37_years	chr4	36641899	36641911	36641899	-	High_confidence	11	12	30	2.735949	4.116265	chr4	36641714	36642024	SINE|Alu|AluY	+	chr4	36496536	36641900	LINC02505|ENST00000510597.5	-	36496536,36498426,36582656,36615453,36641849	36497052,36498488,36582730,36615526,36641900	0.666667
prostate_gland_male_adult_37_years	chr3	188947219	188947237	188947236	+	High_confidence	6	8	15	1.367975	3.039149	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.733333
prostate_gland_male_adult_37_years	chr20	15699855	15699856	15699855	+	RAMPAGE_only	53	55	69	6.292684	5.141968	chr20	15699592	15700275	LINE|L1|L1PB1	-	chr20	15862742	16053197	MACROD2|ENST00000378058.7	+	15862742,15885763,15933275,15937475,15967552,15986726,15987065,16041200,16044570,16049829	15862826,15885811,15933338,15937544,15967630,15986801,15987158,16041278,16044639,16053197	0.710145
prostate_gland_male_adult_37_years	chr15	45513871	45513900	45513871	+	RAMPAGE_only	18	19	59	5.380701	4.659949	chr15	45513473	45513967	LINE|L1|L1M4	+	chr15	45511135	45556730	HMGN2P46|ENST00000409454.5	+	45511135,45512372,45513697,45515772,45520876,45555489	45511205,45512449,45513963,45515892,45521025,45556730	0.525424
prostate_gland_male_adult_37_years	chr16	20676161	20676202	20676161	-	High_confidence	10	13	44	4.012726	4.408255	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.863636
prostate_gland_male_adult_37_years	chr11	86938472	86938485	86938472	-	RAMPAGE_only	4	4	16	1.459173	3.000000	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86892213	86922104	AP001528.2|ENST00000528660.1	-	86892213,86896412,86921235	86892372,86896540,86922104	0.875000
prostate_gland_male_adult_37_years	chr4	138089063	138089077	138089063	+	High_confidence	10	10	20	1.823966	3.431624	chr4	138087760	138089249	LTR|ERV1|LTR12C	-	chr4	138089013	138178177	SLC7A11-AS1|ENST00000510767.5	+	138089013,138090833,138104506,138168716,138171532,138174471,138175660	138089306,138090980,138105791,138168818,138171706,138174607,138178177	0.900000
prostate_gland_male_adult_37_years	chr15	39420726	39420762	39420737	-	High_confidence	3	3	11	1.003181	2.721928	chr15	39420570	39426588	LINE|L1|L1PA2	+	chr15	38885253	39420975	STRG.102929.1	-	38885253,38886696,38974154,39071502,39420543	38885628,38886929,38974235,39071608,39420975	0.636364
prostate_gland_male_adult_37_years	chr4	77636952	77636953	77636952	-	High_confidence	8	8	11	1.003181	2.663533	chr4	77636845	77637162	LTR|ERVL|LTR18C	-	chr4	77636449	77636756	STRG.35914.1	-	77636449	77636756	0.545455
prostate_gland_male_adult_37_years	chr11	9775665	9775676	9775665	+	High_confidence	4	4	12	1.094380	2.855389	chr11	9775466	9776058	LTR|ERVL|MER21C	+	chr11	9775730	9808379	SBF2-AS1|ENST00000534671.1	+	9775730,9780375,9807847	9775765,9780575,9808379	0.583333
prostate_gland_male_adult_37_years	chr2	240022172	240022216	240022172	-	RAMPAGE_only	14	14	46	4.195122	3.246555	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
prostate_gland_male_adult_37_years	chr9	123179217	123179221	123179220	-	RAMPAGE_only	8	9	16	1.459173	2.983459	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	1.000000
prostate_gland_male_adult_37_years	chr3	132267513	132267578	132267541	-	RAMPAGE_only	8	8	31	2.827148	4.373551	chr3	132267462	132267786	LINE|L2|L2c	-	chr3	131534875	132265971	STRG.30029.3	-	131534875,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132039524,132044396,132076287,132265526	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132037710,132040321,132044482,132076431,132265971	0.645161
prostate_gland_male_adult_37_years	chr1	77129077	77129078	77129077	+	High_confidence	324	371	378	34.472963	5.919078	chr1	77128993	77129084	DNA|hAT-Charlie|MER58B	+	chr1	77129113	77129668	AC113935.1|ENST00000471722.1	+	77129113	77129668	0.928571
prostate_gland_male_adult_37_years	chr7	92477617	92477650	92477649	+	RAMPAGE_only	8	8	14	1.276776	2.502736	chr7	92477412	92478192	LTR|ERV1|LTR17	-	chr7	92489849	92493130	STRG.59113.5	+	92489849,92491242,92492171	92490142,92491475,92493130	0.571429
prostate_gland_male_adult_37_years	chr4	79827305	79827306	79827305	+	High_confidence	15	16	21	1.915165	3.386637	chr4	79827343	79827787	LTR|ERVL-MaLR|MLT1D	+	chr4	79827470	79863247	PCAT4|NR_026555.1	+	79827470,79861289	79827603,79863247	0.761905
prostate_gland_male_adult_37_years	chr4	122700441	122700442	122700441	+	RAMPAGE_only	68	68	83	7.569460	5.247214	chr4	122700197	122700669	LTR|ERVL|MER70A	+	chr4	122703821	122705240	STRG.37575.1	+	122703821	122705240	0.518072
prostate_gland_male_adult_37_years	chr12	113773650	113773686	113773685	-	High_confidence	6	6	21	1.915165	3.558519	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113744576	113773683	LINC01234|NR_110026.1	-	113744576,113767074,113773614	113746595,113767208,113773683	0.761905
prostate_gland_male_adult_37_years	chr22	38168092	38168103	38168092	-	High_confidence	18	19	29	2.644751	3.200289	chr22	38167963	38168270	LINE|L2|L2b	+	chr22	38143236	38168090	PLA2G6|ENST00000452972.1	-	38143236,38144895,38145437,38167917	38143288,38144978,38145653,38168090	0.896552
prostate_gland_male_adult_37_years	chr17	28238661	28238667	28238661	-	RAMPAGE_only	19	20	52	4.742312	4.662430	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28230648	28236284	STRG.113004.1	-	28230648,28233917	28233342,28236284	0.788462
prostate_gland_male_adult_37_years	chr8	144853500	144853556	144853555	-	High_confidence	14	14	72	6.566279	5.019033	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	0.986111
prostate_gland_male_adult_37_years	chr18	5748804	5748807	5748806	+	High_confidence	9	13	18	1.641570	3.337175	chr18	5748596	5749144	LTR|ERVL-MaLR|MLT1F2	+	chr18	5748818	5795901	MIR3976HG|ENST00000566533.5	+	5748818,5762297,5769762,5793586,5794793	5748964,5762473,5769866,5793742,5795901	0.888889
prostate_gland_male_adult_37_years	chr14	38948236	38948264	38948263	-	High_confidence	4	4	12	1.094380	2.751629	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749338	38948273	LINC00639|ENST00000553932.5	-	38749338,38762101,38762923,38835230,38835541,38890740,38948177	38749654,38762174,38763045,38835398,38839204,38890798,38948273	0.916667
prostate_gland_male_adult_37_years	chr1	2814055	2814056	2814055	+	High_confidence	169	224	236	21.522802	5.761486	chr1	2813098	2814487	LTR|ERV1|LTR12C	+	chr1	2814071	2817713	STRG.124.1	+	2814071,2817500	2814451,2817713	0.936441
prostate_gland_male_adult_37_years	chr18	23576944	23576948	23576947	-	High_confidence	6	6	11	1.003181	3.095795	chr18	23576532	23578195	LTR|ERV1|LTR12C	-	chr18	23573451	23576947	NPC1|ENST00000587223.1	-	23573451,23576480	23573574,23576947	0.909091
prostate_gland_male_adult_37_years	chr19	40169694	40169695	40169694	-	High_confidence	195	195	199	18.148464	4.730817	chr19	40169279	40170706	LTR|ERV1|LTR12C	-	chr19	40169190	40169487	STRG.122062.1	-	40169190	40169487	0.969849
prostate_gland_male_adult_37_years	chr19	51886861	51886881	51886861	-	High_confidence	9	9	17	1.550371	2.780639	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51880697	51886465	ZNF577|ENST00000639183.1	-	51880697,51886115	51880877,51886465	0.647059
prostate_gland_male_adult_37_years	chr10	63594788	63594826	63594825	+	RAMPAGE_only	7	7	13	1.185578	2.661226	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	0.923077
prostate_gland_male_adult_37_years	chr7	68330406	68330437	68330436	-	High_confidence	4	4	8	0.729587	2.500000	chr7	68330343	68330895	LTR|ERV1|LTR26	+	chr7	68149981	68330333	STRG.57455.1	-	68149981,68288054,68330087	68150323,68288233,68330333	1.000000
prostate_gland_male_adult_37_years	chr16	81664343	81664349	81664343	+	RAMPAGE_only	4	5	9	0.820785	2.725481	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81651190	81709957	STRG.110891.4	+	81651190,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81651427,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81709957	1.000000
prostate_gland_male_adult_37_years	chr3	132259860	132259868	132259862	-	RAMPAGE_only	38	42	69	6.292684	5.179015	chr3	132259704	132260165	LTR|ERVL|LTR33	+	chr3	132239167	132260903	STRG.30029.16	-	132239167,132259783	132244336,132260903	0.507246
prostate_gland_male_adult_37_years	chr12	72255661	72255688	72255661	-	RAMPAGE_only	5	5	19	1.732768	3.366091	chr12	72255193	72255834	LTR|ERVL|MER70B	-	chr12	72253507	72258240	TRHDE-AS1|ENST00000549957.1	-	72253507	72258240	0.947368
prostate_gland_male_adult_37_years	chr13	57520214	57520239	57520214	-	High_confidence	4	4	17	1.550371	3.337175	chr13	57519789	57520336	LTR|ERVL|MER70A	-	chr13	57318449	57520143	STRG.94950.1	-	57318449,57519885	57318835,57520143	0.588235
prostate_gland_male_adult_37_years	chr4	123032871	123032883	123032882	+	RAMPAGE_only	6	6	12	1.094380	2.550341	chr4	123032713	123033033	DNA|TcMar-Tigger|MER47B	+	chr4	122923100	123102293	SPATA5|ENST00000422835.2	+	122923100,122927633,122929039,122933438,122934096,122935713,122936099,122938125,122947232,122979231,123028185,123056386,123057208,123090578,123102183	122923305,122927758,122929197,122933497,122934738,122935843,122936156,122938249,122947488,122979386,123028395,123056440,123057288,123090705,123102293	0.500000
prostate_gland_male_adult_37_years	chr11	3477038	3477079	3477067	-	High_confidence	25	25	128	11.673384	4.942464	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3476005	3477124	STRG.80461.1	-	3476005	3477124	0.898438
prostate_gland_male_adult_37_years	chr4	127497233	127497234	127497233	-	High_confidence	14	14	17	1.550371	3.327820	chr4	127496805	127497530	LTR|ERV1|LTR12	-	chr4	127457650	127497009	STRG.37779.1	-	127457650,127496771	127457672,127497009	0.764706
prostate_gland_male_adult_37_years	chrX	107245311	107245322	107245311	-	High_confidence	3	4	11	1.003181	2.721928	chrX	107244866	107245402	DNA|MULE-MuDR|Ricksha_c	-	chrX	107122920	107245130	STRG.135011.1	-	107122920,107147742,107153171,107153453,107154095,107167648,107175088,107244958	107124332,107147809,107153306,107153503,107154246,107167784,107175193,107245130	0.909091
prostate_gland_male_adult_37_years	chr5	180432890	180432891	180432890	+	High_confidence	18	18	22	2.006363	3.408549	chr5	180431992	180433182	LTR|ERV1|LTR12E	+	chr5	180432899	180433559	STRG.46965.1	+	180432899	180433559	0.863636
prostate_gland_male_adult_37_years	chr2	69794138	69794165	69794164	-	High_confidence	7	8	12	1.094380	2.913977	chr2	69793262	69794493	LTR|ERV1|LTR25-int	-	chr2	69789544	69794974	STRG.14257.2	-	69789544,69794072	69790436,69794974	0.916667
prostate_gland_male_adult_37_years	chrX	47179145	47179148	47179147	+	High_confidence	6	11	17	1.550371	3.101881	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	0.882353
prostate_gland_male_adult_37_years	chr3	189596745	189596746	189596745	+	High_confidence	137	139	158	14.409334	4.751968	chr3	189595942	189597160	LTR|ERV1|LTR12C	+	chr3	189596734	189597102	STRG.32605.1	+	189596734	189597102	0.841772
prostate_gland_male_adult_37_years	chr22	18149863	18149869	18149863	+	High_confidence	4	4	14	1.276776	2.985228	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
prostate_gland_male_adult_37_years	chr7	48708509	48708531	48708515	+	High_confidence	4	7	20	1.823966	3.621928	chr7	48708556	48708983	LTR|ERVL|MER74A	+	chr7	48708326	48711582	AC091770.2|ENST00000649656.1	+	48708326,48708794,48711156	48708703,48708914,48711582	0.850000
prostate_gland_male_adult_37_years	chr14	94581617	94581619	94581617	+	High_confidence	6	12	16	1.459173	2.656565	chr14	94581654	94581760	SINE|MIR|MIRb	+	chr14	94581614	94593115	SERPINA5|ENST00000554276.1	+	94581614,94587345,94590040,94590748,94592056	94581710,94587981,94590311,94590896,94593115	0.937500
prostate_gland_male_adult_37_years	chr12	52118109	52118216	52118139	-	High_confidence	67	68	364	33.196186	6.817462	chr12	52116006	52118404	LTR|ERV1|HERVE-int	-	chr12	52086301	52118551	STRG.89187.4	-	52086301,52087415,52094678,52104158,52108068,52115868	52086385,52087705,52094849,52106001,52108209,52118551	1.000000
prostate_gland_male_adult_37_years	chr4	80303730	80303734	80303730	+	High_confidence	6	6	12	1.094380	3.084963	chr4	80302655	80304045	LTR|ERV1|LTR12C	+	chr4	80303750	80304167	STRG.36071.1	+	80303750	80304167	0.833333
prostate_gland_male_adult_37_years	chr17	8056883	8056884	8056883	+	High_confidence	96	97	101	9.211030	5.660025	chr17	8056835	8057031	LTR|ERVK|LTR14	+	chr17	8056894	8063106	STRG.112047.2	+	8056894	8063106	0.950495
prostate_gland_male_adult_37_years	chr2	69798834	69798862	69798849	-	High_confidence	23	23	61	5.563097	4.902910	chr2	69796454	69798802	LTR|ERV1|HUERS-P3-int	-	chr2	69789544	69798992	STRG.14257.1	-	69789544,69790264,69793702,69794072,69798787	69789926,69790436,69793803,69794221,69798992	0.901639
prostate_gland_male_adult_37_years	chr1	19344364	19344389	19344388	-	RAMPAGE_only	47	47	77	7.022270	4.825374	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19339358	19351431	STRG.1104.7	-	19339358,19342751,19344357,19345186,19349070	19339617,19342864,19344434,19345252,19351431	0.844156
prostate_gland_male_adult_37_years	chr5	17063165	17063166	17063165	+	High_confidence	35	35	36	3.283139	3.036186	chr5	17062036	17063599	LTR|ERV1|LTR12C	+	chr5	17063181	17089121	STRG.40731.1	+	17063181,17065550,17089072	17063653,17065700,17089121	0.972222
prostate_gland_male_adult_37_years	chr2	180692008	180692009	180692008	+	High_confidence	225	225	238	21.705199	4.753401	chr2	180691204	180692425	LTR|ERV1|LTR12C	+	chr2	180692021	180824070	STRG.19318.1	+	180692021,180724595,180823932	180692441,180724690,180824070	0.962185
prostate_gland_male_adult_37_years	chr8	19777344	19777367	19777366	-	High_confidence	10	10	38	3.465536	4.027719	chr8	19777240	19777664	LTR|ERVL-MaLR|MLT1B	-	chr8	19762022	19777420	STRG.63243.2	-	19762022,19777253	19762253,19777420	0.578947
prostate_gland_male_adult_37_years	chr10	122127024	122127025	122127024	+	High_confidence	6	6	8	0.729587	2.521641	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.500000
prostate_gland_male_adult_37_years	chr10	63664649	63664655	63664654	+	High_confidence	7	7	20	1.823966	3.366091	chr10	63664644	63665398	LTR|ERV1|LTR17	-	chr10	63664663	63990568	AC022387.1|ENST00000444770.1	+	63664663,63684921,63990268	63664772,63685306,63990568	0.700000
prostate_gland_male_adult_37_years	chr2	163121645	163121683	163121682	+	High_confidence	12	12	53	4.833511	4.217749	chr2	163121522	163122034	LINE|L1|L1ME2	-	chr2	163121658	163124778	STRG.18363.1	+	163121658,163124118	163121927,163124778	0.981132
prostate_gland_male_adult_37_years	chr2	11633923	11633937	11633936	+	RAMPAGE_only	5	5	10	0.911983	2.947703	chr2	11633786	11633964	SINE|MIR|MIRb	+	chr2	11612258	11642788	GREB1|ENST00000396123.2	+	11612258,11612494,11615090,11616630,11618287,11620904,11625153,11626961,11629947,11631908,11632888,11634130,11635269,11637715,11638670,11640290	11612376,11612610,11615290,11616720,11618919,11621007,11625312,11627104,11630109,11632113,11633063,11634349,11635405,11637916,11638809,11642788	0.800000
prostate_gland_male_adult_37_years	chr2	166185031	166185032	166185031	+	RAMPAGE_only	9	9	13	1.185578	3.180833	chr2	166184665	166185205	LINE|L2|L2a	-	chr2	166149180	166294588	AC010127.1|ENST00000630020.2	+	166149180,166171386,166199638,166248194,166249342,166251833,166277087,166294564	166149572,166171558,166199818,166248276,166249384,166251912,166277247,166294588	0.615385
prostate_gland_male_adult_37_years	chr16	12144568	12144590	12144589	+	RAMPAGE_only	3	3	11	1.003181	2.646439	chr16	12144372	12144711	LTR|ERVL-MaLR|MSTD	+	chr16	12129696	12527397	SNX29|ENST00000564791.5	+	12129696,12199600,12277932,12356162,12398445,12403447,12477718,12524701,12526549	12129758,12199683,12278036,12356279,12398501,12403529,12477859,12524841,12527397	0.545455
prostate_gland_male_adult_37_years	chr6	118651542	118651602	118651592	-	High_confidence	15	15	77	7.022270	5.698264	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.987013
prostate_gland_male_adult_37_years	chr15	57451517	57451565	57451517	+	RAMPAGE_only	11	11	68	6.201485	4.246321	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.985294
prostate_gland_male_adult_37_years	chr1	153967460	153967498	153967486	+	High_confidence	8	9	35	3.191941	3.423669	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.914286
prostate_gland_male_adult_37_years	chr1	46411470	46411471	46411470	+	RAMPAGE_only	12	12	17	1.550371	2.602217	chr1	46411370	46411498	SINE|MIR|MIR3	+	chr1	46410051	46411651	FAAH|ENST00000493636.1	+	46410051,46410813,46411611	46410497,46410854,46411651	0.705882
prostate_gland_male_adult_37_years	chr1	6208681	6208682	6208681	-	High_confidence	80	80	80	7.295865	3.480418	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.975000
prostate_gland_male_adult_37_years	chr6	146770452	146770471	146770470	+	High_confidence	9	11	31	2.827148	3.872906	chr6	146770491	146770584	LINE|L2|L2c	+	chr6	146770444	146788504	ADGB|ENST00000470716.2	+	146770444,146782019,146785609,146788388	146770609,146782192,146785712,146788504	0.677419
prostate_gland_male_adult_37_years	chr22	40400702	40400703	40400702	+	RAMPAGE_only	12	12	16	1.459173	2.973557	chr22	40400675	40400747	SINE|MIR|MIR3	+	chr22	40370638	40410108	SGSM3|ENST00000485962.5	+	40370638,40400695,40401592,40402138,40404246,40404556,40405140,40405648,40406077,40406437,40407016,40407788,40408070,40408276,40408626,40408793,40408932,40409249,40409464,40409681	40370688,40400813,40401675,40402205,40404455,40404664,40405284,40405844,40406223,40406662,40407568,40407843,40408120,40408429,40408697,40408842,40409018,40409372,40409525,40410108	0.750000
prostate_gland_male_adult_37_years	chr9	92536601	92536602	92536601	-	High_confidence	9	11	11	1.003181	2.913977	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.818182
prostate_gland_male_adult_37_years	chr4	73144770	73144771	73144770	-	RAMPAGE_only	7	7	10	0.911983	2.503258	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.900000
prostate_gland_male_adult_37_years	chr4	170092164	170092165	170092164	+	High_confidence	32	32	33	3.009544	3.577820	chr4	170091048	170092581	LTR|ERV1|LTR12C	+	chr4	170092171	170100008	STRG.39283.1	+	170092171,170099817	170092576,170100008	0.939394
prostate_gland_male_adult_37_years	chr15	78847663	78847664	78847663	+	High_confidence	21	21	22	2.006363	3.594466	chr15	78846690	78848069	LTR|ERV1|LTR12C	+	chr15	78847666	78886161	MORF4L1|ENST00000559697.5	+	78847666,78878212,78880511,78886140	78848081,78878259,78880579,78886161	0.727273
prostate_gland_male_adult_37_years	chr3	50230995	50230996	50230995	+	High_confidence	14	14	14	1.276776	3.093069	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	0.857143
prostate_gland_male_adult_37_years	chr3	179681665	179681670	179681669	+	RAMPAGE_only	5	5	14	1.276776	3.182006	chr3	179681222	179681750	LTR|ERV1|LTR6A	-	chr3	179653692	179784406	USP13|ENST00000496897.5	+	179653692,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653750,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179784406	1.000000
prostate_gland_male_adult_37_years	chr12	12927733	12927751	12927733	+	High_confidence	50	53	120	10.943798	5.859033	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.600000
prostate_gland_male_adult_37_years	chr4	158173024	158173025	158173024	-	High_confidence	32	32	46	4.195122	4.719522	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.956522
prostate_gland_male_adult_37_years	chr19	39168235	39168296	39168269	+	High_confidence	8	8	29	2.644751	4.004344	chr19	39168210	39168339	SINE|MIR|MIR3	-	chr19	39168610	39179406	PAK4|ENST00000360442.7	+	39168610,39169531,39172917,39173575,39174930,39175311,39176589,39177674,39178423	39168840,39169757,39173376,39174010,39175064,39175438,39176715,39177809,39179406	0.862069
prostate_gland_male_adult_37_years	chr19	39838075	39838076	39838075	-	High_confidence	11	12	17	1.550371	2.558051	chr19	39837878	39838078	SINE|MIR|MIRb	-	chr19	39834459	39838091	FBL|ENST00000593503.5	-	39834459,39834667,39836555,39837710,39837958	39834562,39834813,39836668,39837843,39838091	1.000000
prostate_gland_male_adult_37_years	chr12	52116154	52116254	52116182	-	RAMPAGE_only	44	44	235	21.431604	3.678138	chr12	52116006	52118404	LTR|ERV1|HERVE-int	-	chr12	52089218	52118551	STRG.89187.7	-	52089218,52104158,52106333	52094852,52106001,52118551	0.995745
prostate_gland_male_adult_37_years	chr7	100355169	100355175	100355174	+	RAMPAGE_only	6	6	10	0.911983	2.503258	chr7	100355125	100355232	LINE|L1|L1MD	-	chr7	100353735	100359014	PILRB|ENST00000431140.5	+	100353735,100355142,100356749,100358219,100358898	100354012,100355240,100356883,100358366,100359014	0.600000
prostate_gland_male_adult_37_years	chr4	47790269	47790273	47790269	-	High_confidence	4	4	9	0.820785	2.503258	chr4	47790242	47790586	LTR|ERV1|MER61A	+	chr4	47595481	47790260	CORIN|ENST00000508498.5	-	47595481,47600213,47603396,47623570,47623898,47626404,47641919,47643145,47645080,47653552,47661710,47665031,47674392,47677937,47680140,47683730,47692969,47744401,47763378,47786724,47790220	47595903,47600347,47603668,47623745,47623948,47626521,47642049,47643256,47645194,47653660,47661856,47665263,47674500,47678054,47680251,47683838,47693083,47744583,47763586,47786925,47790260	0.888889
prostate_gland_male_adult_37_years	chr2	69439566	69439567	69439566	-	High_confidence	16	17	19	1.732768	3.350209	chr2	69439251	69440147	LTR|ERV1|LTR12C	-	chr2	69438980	69439690	STRG.14212.1	-	69438980	69439690	0.842105
prostate_gland_male_adult_37_years	chr1	6200038	6200048	6200038	-	High_confidence	2	2	9	0.820785	2.503258	chr1	6200027	6200112	LINE|L2|L2b	+	chr1	6185019	6199619	RPL22|NM_000983.3	-	6185019,6192929,6197651,6199561	6186816,6193054,6197756,6199619	1.000000
prostate_gland_male_adult_37_years	chr6	3663876	3663981	3663941	-	RAMPAGE_only	38	40	202	18.422059	4.503275	chr6	3663694	3663958	LTR|ERVL-MaLR|MLT1N2	-	chr6	3662223	3720099	STRG.47400.10	-	3662223,3719362	3663905,3720099	0.990099
prostate_gland_male_adult_37_years	chr20	18379021	18379046	18379045	+	High_confidence	4	5	15	1.367975	3.056565	chr20	18379043	18379220	DNA|hAT-Charlie|MER33	+	chr20	18379048	18381484	LINC00851|NR_034167.1	+	18379048,18380778	18379069,18381484	1.000000
prostate_gland_male_adult_37_years	chr12	16058206	16058207	16058206	+	High_confidence	67	71	90	8.207848	4.696812	chr12	16057198	16058622	LTR|ERV1|LTR12C	+	chr12	16058219	16058604	STRG.87679.1	+	16058219	16058604	0.922222
prostate_gland_male_adult_37_years	chr22	40843011	40843025	40843011	-	RAMPAGE_only	4	6	17	1.550371	3.500000	chr22	40842870	40843130	SINE|Alu|AluJr	+	chr22	40830874	40844890	ST13|ENST00000413424.5	-	40830874,40832086,40832568,40835559,40835802,40840625,40844838	40830956,40832216,40832671,40835670,40835887,40840692,40844890	0.882353
prostate_gland_male_adult_37_years	chr14	19444632	19444633	19444632	-	RAMPAGE_only	75	76	80	7.295865	4.523217	chr14	19444118	19445081	LINE|L1|L1MA6	+	chr14	19372772	19451563	STRG.96768.5	-	19372772,19381176,19398019,19404616,19413353,19414561,19416287,19421623,19424164,19425605,19426732,19428541,19428874,19433768,19444566,19447095,19449507	19376011,19381312,19403109,19404735,19413520,19414606,19416358,19421694,19424302,19425712,19426988,19428715,19428989,19442569,19444679,19447209,19451563	0.950000
prostate_gland_male_adult_37_years	chr3	110969835	110969838	110969835	-	High_confidence	8	8	13	1.185578	3.084963	chr3	110969731	110970304	LTR|ERV1|LTR10C	-	chr3	110893136	110969905	STRG.28434.2	-	110893136,110969501	110893830,110969905	0.692308
prostate_gland_male_adult_37_years	chr17	33580070	33580077	33580070	+	High_confidence	4	4	10	0.911983	2.921928	chr17	33579495	33580095	LTR|ERV1|LTR12D	-	chr17	33580075	33624122	AC011824.2|ENST00000579975.1	+	33580075,33581155,33623453,33624088	33580273,33581465,33623544,33624122	0.600000
prostate_gland_male_adult_37_years	chr2	3536830	3536889	3536830	-	High_confidence	6	6	37	3.374338	4.303784	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.918919
prostate_gland_male_adult_37_years	chr19	9700673	9700674	9700673	-	High_confidence	9	9	9	0.820785	2.641604	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	1.000000
prostate_gland_male_adult_37_years	chr18	1407215	1407231	1407230	-	High_confidence	16	16	31	2.827148	4.004364	chr18	1407047	1407340	SINE|Alu|AluY	+	chr18	1268310	1407180	LINC00470|ENST00000412816.7	-	1268310,1272441,1275965,1368484,1406986	1269852,1272511,1276077,1368597,1407180	0.612903
prostate_gland_male_adult_37_years	chr7	121062866	121062868	121062866	+	High_confidence	5	8	10	0.911983	2.721928	chr7	121062672	121063032	LTR|ERVL-MaLR|THE1B	+	chr7	121062764	121261918	CPED1|ENST00000423795.5	+	121062764,121064237,121097698,121099925,121124330,121125819,121127089,121128381,121130124,121133822,121136039,121140826,121141972,121236713,121244201,121261631	121062896,121064313,121097831,121100094,121124473,121125892,121127257,121128486,121130294,121133893,121136090,121141013,121142141,121236831,121244338,121261918	0.700000
prostate_gland_male_adult_37_years	chr6	104936998	104937026	104937025	+	High_confidence	7	7	16	1.459173	3.500000	chr6	104936824	104937119	SINE|Alu|AluJb	-	chr6	104936615	105078602	LIN28B|ENST00000635857.1	+	104936615,104936849,104950460,104958098,105026297,105078413	104936649,104937116,104950509,104958286,105026482,105078602	0.750000
prostate_gland_male_adult_37_years	chr8	101262937	101262945	101262937	-	High_confidence	7	7	12	1.094380	2.625815	chr8	101262833	101263182	LTR|ERVL-MaLR|MLT1K	-	chr8	101261540	101262903	AP001330.2|ENST00000523121.1	-	101261540,101262766	101262382,101262903	1.000000
prostate_gland_male_adult_37_years	chr19	45823789	45823837	45823822	-	High_confidence	9	10	32	2.918346	3.851410	chr19	45823777	45823871	LINE|RTE-BovB|MamRTE1	-	chr19	45816482	45824012	SYMPK|ENST00000598329.2	-	45816482,45816797,45817958,45821383,45822755,45823371,45823766	45816577,45816974,45818146,45821485,45822846,45823472,45824012	0.562500
prostate_gland_male_adult_37_years	chr9	39810033	39810040	39810039	-	High_confidence	5	5	13	1.185578	2.751629	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807380	39810058	GLIDR|ENST00000618092.2	-	39807380,39809730	39809633,39810058	0.538462
prostate_gland_male_adult_37_years	chr20	38146721	38146753	38146721	-	RAMPAGE_only	6	6	23	2.097561	3.558519	chr20	38146558	38146675	SINE|MIR|MIR3	-	chr20	38137949	38165282	TGM2|ENST00000468262.5	-	38137949,38139411,38141281,38142063,38146716,38147960,38150938,38155846,38161419,38165188	38138385,38139654,38141385,38142199,38146894,38148089,38151057,38156089,38161599,38165282	0.782609
prostate_gland_male_adult_37_years	chr19	48868595	48868631	48868595	-	High_confidence	82	83	353	32.193005	6.710996	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.991501
prostate_gland_male_adult_37_years	chr5	172958875	172958925	172958918	+	High_confidence	21	24	94	8.572642	4.638693	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.925532
prostate_gland_male_adult_37_years	chr4	141332616	141332617	141332616	-	High_confidence	130	131	164	14.956523	4.190726	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.975610
prostate_gland_male_adult_37_years	chr12	21662312	21662316	21662312	+	High_confidence	34	35	58	5.289502	4.965318	chr12	21661347	21662731	LTR|ERV1|LTR12C	+	chr12	21662312	21760032	AC010197.1|ENST00000541860.1	+	21662312,21759913	21662771,21760032	0.862069
prostate_gland_male_adult_37_years	chr12	107864563	107864564	107864563	-	High_confidence	13	13	14	1.276776	2.873141	chr12	107864193	107865394	LTR|ERV1|LTR12D	+	chr12	107839349	107864562	AC126177.4|ENST00000551629.2	-	107839349,107845400,107845962,107864441	107839366,107845587,107846117,107864562	0.857143
prostate_gland_male_adult_37_years	chr17	59620040	59620064	59620040	+	High_confidence	2	2	13	1.185578	3.085055	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.923077
prostate_gland_male_adult_37_years	chr17	79919418	79919444	79919418	+	High_confidence	4	4	12	1.094380	2.855389	chr17	79919404	79919492	SINE|MIR|MIR3	-	chr17	79919356	79924010	LOC101928738|NR_110851.1	+	79919356,79922690	79919576,79924010	0.500000
prostate_gland_male_adult_37_years	chr6	75442171	75442205	75442204	-	RAMPAGE_only	3	3	10	0.911983	2.521928	chr6	75440987	75442779	Retroposon|SVA|SVA_D	-	chr6	75291858	75493629	FILIP1|ENST00000393004.6	-	75291858,75308839,75312396,75353538,75362743,75414696,75493413	75295950,75308897,75315202,75353717,75362917,75414978,75493629	1.000000
prostate_gland_male_adult_37_years	chrX	136922340	136922341	136922340	+	RAMPAGE_only	86	88	91	8.299047	4.851875	chrX	136921248	136922756	LTR|ERV1|LTR12C	+	chrX	136921179	136925317	STRG.136348.1	+	136921179,136925246	136922776,136925317	0.802198
prostate_gland_male_adult_37_years	chr7	48000229	48000235	48000229	-	High_confidence	5	5	13	1.185578	2.855389	chr7	48000133	48000438	SINE|Alu|AluSx	-	chr7	47987253	48000218	STRG.57009.2	-	47987253,47988787,47994314,47996030,48000127	47987449,47988880,47994482,47996146,48000218	0.923077
prostate_gland_male_adult_37_years	chr12	52116319	52116335	52116319	-	RAMPAGE_only	5	6	11	1.003181	2.721928	chr12	52116006	52118404	LTR|ERV1|HERVE-int	-	chr12	52086301	52118551	STRG.89187.4	-	52086301,52087415,52094678,52104158,52108068,52115868	52086385,52087705,52094849,52106001,52108209,52118551	0.909091
prostate_gland_male_adult_37_years	chr10	45071619	45071645	45071644	-	High_confidence	5	7	14	1.276776	2.719295	chr10	45071631	45071776	SINE|Alu|AluJb	-	chr10	45066171	45071620	CEP164P1|ENST00000598559.1	-	45066171,45066332,45070477,45071564	45066221,45066522,45070982,45071620	0.571429
prostate_gland_male_adult_37_years	chr1	205422055	205422056	205422055	-	High_confidence	13	13	14	1.276776	3.026987	chr1	205421923	205422209	DNA|DNA|UCON78	-	chr1	205381377	205422054	LEMD1|ENST00000367153.8	-	205381377,205384287,205416231,205419229,205420454,205421989	205381856,205384364,205416296,205419352,205420574,205422054	0.928571
prostate_gland_male_adult_37_years	chr20	5445720	5445740	5445720	-	High_confidence	12	12	22	2.006363	3.594466	chr20	5445444	5445928	LTR|ERVL-MaLR|MLT1F	-	chr20	5434284	5445740	LINC00658|ENST00000609252.1	-	5434284,5437099,5438209,5445503	5434405,5437273,5438315,5445740	0.545455
prostate_gland_male_adult_37_years	chr12	14530138	14530139	14530138	+	High_confidence	27	27	31	2.827148	4.014860	chr12	14529937	14530469	LTR|ERVL-MaLR|MLT1F1	+	chr12	14530150	14533229	AC008114.1|ENST00000544122.1	+	14530150,14531041,14533062	14530241,14531210,14533229	0.838710
prostate_gland_male_adult_37_years	chr21	44305175	44305189	44305185	+	High_confidence	10	14	25	2.279958	3.044889	chr21	44305083	44305240	SINE|MIR|MIRc	+	chr21	44305193	44313954	PFKL|ENST00000491298.1	+	44305193,44306680,44311005,44312104,44312977,44313637,44313912	44305417,44306754,44311083,44312294,44313143,44313682,44313954	0.800000
prostate_gland_male_adult_37_years	chr17	74112901	74112902	74112901	-	High_confidence	23	23	23	2.097561	3.740953	chr17	74112609	74113873	LTR|ERV1|LTR12E	-	chr17	74043451	74112899	LINC02074|ENST00000581028.5	-	74043451,74091021,74106879,74112645	74043509,74091176,74106981,74112899	0.652174
prostate_gland_male_adult_37_years	chr14	94065876	94065901	94065900	-	RAMPAGE_only	2	2	7	0.638388	2.584963	chr14	94065490	94071367	LINE|L1|L1PB1	+	chr14	94050937	94081183	DDX24|ENST00000330836.9	-	94050937,94052997,94054995,94057821,94060097,94060912,94062096,94079024,94079234,94081118	94051462,94053127,94055184,94057897,94060613,94061066,94062621,94079069,94079747,94081183	0.857143
prostate_gland_male_adult_37_years	chr2	106585306	106585307	106585306	+	High_confidence	14	15	15	1.367975	3.373557	chr2	106584244	106585726	LTR|ERV1|LTR12C	+	chr2	106585320	106585934	STRG.15691.1	+	106585320	106585934	0.866667
prostate_gland_male_adult_37_years	chr5	166926369	166926370	166926369	-	High_confidence	42	44	47	4.286321	4.578639	chr5	166925926	166927511	LTR|ERV1|LTR12C	-	chr5	166905221	166926370	LINC01947|ENST00000523742.1	-	166905221,166907924,166925962	166905292,166908011,166926370	0.638298
prostate_gland_male_adult_37_years	chr2	130460527	130460528	130460527	-	RAMPAGE_only	14	14	14	1.276776	2.896292	chr2	130460460	130460555	LINE|L1|L1PA13	-	chr2	130459454	130509666	POTEI|ENST00000451531.6	-	130459454,130465651,130474377,130474906,130476630,130482002,130488031,130489234,130490669,130496551,130499083,130500535,130503445,130503779,130508714	130464144,130465772,130474559,130474951,130476701,130482073,130488198,130489279,130490740,130496622,130499221,130500642,130503619,130503894,130509666	0.928571
prostate_gland_male_adult_37_years	chr11	16408855	16408856	16408855	-	High_confidence	8	8	10	0.911983	2.725481	chr11	16408706	16408831	SINE|Alu|FLAM_A	-	chr11	15966448	16408884	SOX6|NM_001145811.1	-	15966448,15986203,15988996,16014941,16046513,16049712,16055751,16097608,16111802,16183885,16186782,16234581,16318445,16341011,16408697	15973112,15986420,15989230,16015050,16046701,16049938,16055901,16097688,16111923,16183954,16186955,16234671,16318653,16341252,16408884	0.800000
prostate_gland_male_adult_37_years	chr2	113184962	113185038	113185037	+	High_confidence	14	14	57	5.198304	4.184484	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.912281
prostate_gland_male_adult_37_years	chr3	44836932	44836946	44836945	+	RAMPAGE_only	9	12	24	2.188760	3.522055	chr3	44836672	44837164	LTR|ERV1|LOR1a	-	chr3	44840368	44851788	STRG.25334.1	+	44840368,44841073,44843124,44847984,44848520,44851786	44840456,44841238,44843234,44848057,44848558,44851788	0.916667
prostate_gland_male_adult_37_years	chr1	51297974	51297976	51297974	-	High_confidence	5	8	11	1.003181	2.663533	chr1	51297625	51298239	LINE|L2|L2a	+	chr1	51287257	51297961	TTC39A|NM_001297666.1	-	51287257,51288838,51290004,51290513,51294390,51296078,51297790	51288280,51288955,51290119,51290625,51294511,51296170,51297961	1.000000
prostate_gland_male_adult_37_years	chr17	31762436	31762437	31762436	+	High_confidence	10	10	12	1.094380	2.688722	chr17	31762038	31762862	LTR|ERV1|LTR12	+	chr17	31762439	31769048	AC007923.1|ENST00000577970.1	+	31762439,31769006	31762902,31769048	0.916667
prostate_gland_male_adult_37_years	chrX	103517451	103517475	103517474	-	RAMPAGE_only	167	185	249	22.708380	6.738182	chrX	103517347	103517455	SINE|MIR|MIR3	-	chrX	103437015	103461662	STRG.134865.2	-	103437015,103461517	103437766,103461662	0.506024
prostate_gland_male_adult_37_years	chr8	80084321	80084328	80084321	-	RAMPAGE_only	9	9	17	1.550371	2.602217	chr8	80084257	80084362	LTR|ERVL-MaLR|MLT1K	+	chr8	80034867	80080831	TPD52|NM_001025252.2	-	80034867,80042619,80051526,80053281,80064477,80080314	80038235,80042668,80051628,80053430,80064593,80080831	0.705882
prostate_gland_male_adult_37_years	chr5	151158479	151158499	151158498	-	High_confidence	5	5	14	1.276776	2.610577	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.785714
prostate_gland_male_adult_37_years	chr14	73590108	73590109	73590108	-	High_confidence	26	27	27	2.462354	3.074876	chr14	73589718	73590989	LTR|ERV1|LTR12C	-	chr14	73580689	73590233	STRG.99746.1	-	73580689,73589692	73580711,73590233	0.851852
prostate_gland_male_adult_37_years	chr15	81414575	81414587	81414586	+	High_confidence	37	38	66	6.019089	4.525441	chr15	81413881	81415086	LTR|ERV1|LTR12D	+	chr15	81414814	81415054	STRG.105808.1	+	81414814	81415054	0.954545
prostate_gland_male_adult_37_years	chr11	71999608	71999627	71999608	+	High_confidence	4	5	24	2.188760	3.200826	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999600	72002697	IL18BP|ENST00000534583.5	+	71999600,72000350,72001200,72001404,72001783,72002552	72000012,72000557,72001324,72001552,72001948,72002697	1.000000
prostate_gland_male_adult_37_years	chr11	4116254	4116264	4116254	+	High_confidence	9	14	31	2.827148	3.468182	chr11	4115961	4116307	LTR|ERV1|HERV-Fc1_LTR1	-	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.967742
prostate_gland_male_adult_37_years	chr17	59619874	59619923	59619894	+	High_confidence	389	448	1324	120.746568	6.020120	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.972810
prostate_gland_male_adult_37_years	chr20	25191773	25191791	25191773	-	RAMPAGE_only	2	3	11	1.003181	2.921928	chr20	25191623	25192078	LTR|ERVL|MER70A	-	chr20	25184671	25196892	LOC101926889|NR_109994.1	-	25184671,25186541,25186896,25187852,25190217,25196622	25186160,25186699,25186979,25187947,25190302,25196892	0.909091
prostate_gland_male_adult_37_years	chr15	80059915	80059933	80059918	+	High_confidence	50	56	129	11.764582	5.005167	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.968992
prostate_gland_male_adult_37_years	chrX	71383093	71383129	71383128	+	RAMPAGE_only	4	4	12	1.094380	2.522055	chrX	71383170	71383464	LINE|L1|L1MC5a	+	chrX	71366304	71464046	TAF1|ENST00000276072.7	+	71366304,71367498,71368053,71375166,71376949,71377602,71378234,71378823,71381742,71382535,71382760,71382990,71383961,71384944,71387260,71388236,71388737,71389584,71392568,71392874,71393300,71394066,71397252,71398571,71401527,71406637,71407573,71407973,71421308,71423116,71423973,71424153,71454169,71454740,71458240,71459551,71460625,71463823	71366494,71367613,71368170,71375286,71377191,71377821,71378453,71379031,71381919,71382663,71382868,71383164,71384135,71385049,71387461,71388378,71388868,71389665,71392718,71392994,71393476,71394245,71397466,71398737,71401739,71406746,71407672,71408151,71421376,71423239,71424066,71424238,71454237,71454857,71458366,71459708,71460803,71464046	1.000000
prostate_gland_male_adult_37_years	chr6	163671634	163671672	163671634	+	RAMPAGE_only	10	10	40	3.647933	4.475071	chr6	163671518	163671708	LTR|ERVL-MaLR|MLT1I	+	chr6	163703903	163759841	AL137005.1|ENST00000452944.1	+	163703903,163759224	163704005,163759841	0.700000
prostate_gland_male_adult_37_years	chr7	99983776	99983818	99983808	-	RAMPAGE_only	4	4	14	1.276776	2.842371	chr7	99983739	99983825	SINE|MIR|MIRb	+	chr7	99966729	99976157	AZGP1|ENST00000292401.8	-	99966729,99968154,99971745,99975944	99967286,99968430,99972006,99976157	0.714286
prostate_gland_male_adult_37_years	chr2	232816731	232816766	232816731	+	RAMPAGE_only	13	13	44	4.012726	4.390805	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.977273
prostate_gland_male_adult_37_years	chr8	57492851	57492902	57492901	+	High_confidence	7	7	24	2.188760	3.834963	chr8	57492877	57493170	LINE|L1|HAL1	-	chr8	57492883	57545943	AC090796.1|ENST00000520370.1	+	57492883,57545468	57492975,57545943	0.708333
prostate_gland_male_adult_37_years	chr9	37752900	37752901	37752900	+	High_confidence	28	29	29	2.644751	3.181112	chr9	37752210	37753281	LTR|ERV1|LTR12C	+	chr9	37752917	37770267	STRG.69571.1	+	37752917,37761902,37762576,37763628,37768075,37769940	37753293,37762117,37762685,37763753,37768228,37770267	1.000000
prostate_gland_male_adult_37_years	chr16	2768524	2768579	2768524	+	High_confidence	8	8	17	1.550371	2.660130	chr16	2768449	2768579	LINE|CR1|Plat_L3	+	chr16	2768550	2769454	SRRM2|ENST00000570705.1	+	2768550,2768996	2768767,2769454	0.882353
prostate_gland_male_adult_37_years	chr21	28539494	28539501	28539494	+	High_confidence	10	10	23	2.097561	3.000973	chr21	28539394	28539851	LTR|ERVL-MaLR|MLT1C	+	chr21	28539354	28543295	STRG.127655.1	+	28539354,28540052,28542849	28539884,28540227,28543295	1.000000
prostate_gland_male_adult_37_years	chr14	81170385	81170420	81170385	-	High_confidence	7	7	36	3.283139	3.978864	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.916667
prostate_gland_male_adult_37_years	chrX	147332150	147332153	147332152	-	High_confidence	10	17	22	2.006363	3.441446	chrX	147331839	147332334	LINE|L1|L1M7	+	chrX	147316239	147332550	STRG.136672.8	-	147316239,147332093	147329084,147332550	0.772727
prostate_gland_male_adult_37_years	chr10	130213516	130213537	130213518	+	High_confidence	9	16	25	2.279958	3.220176	chr10	130213296	130213675	LTR|ERV1|MER48	-	chr10	130213525	130253055	STRG.79756.1	+	130213525,130251906	130214029,130253055	0.800000
prostate_gland_male_adult_37_years	chr11	43881087	43881098	43881087	+	High_confidence	5	5	16	1.459173	3.506891	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.937500
prostate_gland_male_adult_37_years	chr4	80301327	80301328	80301327	+	RAMPAGE_only	10	11	11	1.003181	3.095795	chr4	80301302	80301442	DNA|TcMar-Tigger|Tigger9b	+	chr4	80335719	80963756	C4orf22|NM_152770.2	+	80335719,80362753,80583092,80869992,80944809,80963516	80335879,80362884,80583183,80870135,80944939,80963756	0.909091
prostate_gland_male_adult_37_years	chr9	113392148	113392165	113392148	-	RAMPAGE_only	12	12	23	2.097561	3.323143	chr9	113391831	113392103	LINE|CR1|L3	-	chr9	113386311	113401120	ALAD|NM_001317745.1	-	113386311,113388976,113389437,113389598,113389772,113390404,113390592,113390797,113391526,113393446,113400933	113388361,113389106,113389524,113389686,113389828,113390493,113390676,113390933,113391623,113393634,113401120	0.521739
prostate_gland_male_adult_37_years	chr15	89801730	89801819	89801764	-	High_confidence	21	21	129	11.764582	3.789266	chr15	89801721	89801786	SINE|MIR|MIR1_Amn	+	chr15	89797574	89802736	ANPEP|ENST00000558177.5	-	89797574,89799259,89799425,89801110,89801434,89802406	89797722,89799315,89799559,89801187,89801607,89802736	0.914729
prostate_gland_male_adult_37_years	chr4	79086136	79086142	79086141	+	High_confidence	7	7	15	1.367975	3.182006	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.800000
prostate_gland_male_adult_37_years	chrX	24151382	24151403	24151402	+	High_confidence	7	7	14	1.276776	2.777363	chrX	24151340	24151459	LINE|L2|L2b	-	chrX	24151927	24179530	STRG.132109.6	+	24151927,24172714,24173606,24179182	24152830,24172800,24173723,24179530	0.857143
prostate_gland_male_adult_37_years	chr18	43787828	43787829	43787828	-	RAMPAGE_only	21	21	25	2.279958	3.772055	chr18	43787488	43788037	LTR|ERVL|MLT2A2	-	chr18	43783832	43784862	STRG.118054.1	-	43783832	43784862	0.800000
prostate_gland_male_adult_37_years	chr8	32927967	32927984	32927976	+	RAMPAGE_only	54	61	160	14.591730	5.527488	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.781250
prostate_gland_male_adult_37_years	chr16	20674497	20674498	20674497	+	High_confidence	459	471	555	50.615064	4.794650	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.915315
prostate_gland_male_adult_37_years	chr3	114624940	114625034	114625006	-	High_confidence	37	37	223	20.337224	5.748676	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.686099
prostate_gland_male_adult_37_years	chr16	2768813	2768863	2768813	+	High_confidence	21	21	62	5.654295	4.752894	chr16	2768682	2768858	LINE|CR1|L3b	-	chr16	2768745	2770229	SRRM2|ENST00000576878.1	+	2768745,2769627	2769284,2770229	0.967742
prostate_gland_male_adult_37_years	chr2	131554986	131555007	131554986	+	High_confidence	12	12	20	1.823966	3.616349	chr2	131554702	131555824	LINE|L1|L1MA6	-	chr2	131555006	131568797	STRG.16870.9	+	131555006,131557350,131564860	131555184,131557463,131568797	0.950000
prostate_gland_male_adult_37_years	chr4	79827376	79827377	79827376	+	High_confidence	10	10	14	1.276776	2.950212	chr4	79827343	79827787	LTR|ERVL-MaLR|MLT1D	+	chr4	79827470	79863247	PCAT4|NR_026555.1	+	79827470,79861289	79827603,79863247	0.857143
prostate_gland_male_adult_37_years	chr21	45134716	45134735	45134734	+	High_confidence	8	8	18	1.641570	2.822182	chr21	45134610	45134741	LINE|L1|L1M	+	chr21	45134795	45226559	ADARB1|ENST00000629643.2	+	45134795,45171609,45175729,45180329,45182584,45183361,45184922,45204554,45220835,45222017,45225546	45134832,45171684,45176664,45180444,45182753,45183510,45185091,45204736,45221014,45223577,45226559	0.500000
prostate_gland_male_adult_37_years	chr3	81562108	81562109	81562108	-	High_confidence	6	7	9	0.820785	2.503258	chr3	81562068	81562190	LINE|L2|L2b	+	chr3	81489743	81562084	STRG.27679.2	-	81489743,81499109,81535194,81536910,81562007	81490463,81499227,81535325,81537095,81562084	0.888889
prostate_gland_male_adult_37_years	chr11	322621	322670	322635	-	High_confidence	24	24	193	17.601275	5.771219	chr11	322580	322928	LTR|ERV1|LTR76	-	chr11	319772	322635	STRG.80026.3	-	319772,320564,322595	319990,320772,322635	0.590674
prostate_gland_male_adult_37_years	chr2	233953633	233953654	233953633	+	High_confidence	4	4	18	1.641570	3.337175	chr2	233953602	233953643	LINE|L2|L2b	-	chr2	233953708	233960924	TRPM8|ENST00000487033.1	+	233953708,233955131,233960775	233954019,233955250,233960924	0.833333
prostate_gland_male_adult_37_years	chr2	38880029	38880044	38880043	+	RAMPAGE_only	8	8	18	1.641570	2.768854	chr2	38880011	38880140	SINE|Alu|FLAM_C	+	chr2	38876067	38882652	MORN2|ENST00000409131.2	+	38876067,38880178,38880599,38881475,38882412	38876110,38880229,38880706,38881578,38882652	0.611111
prostate_gland_male_adult_37_years	chr9	117449081	117449086	117449085	-	RAMPAGE_only	6	6	11	1.003181	3.095795	chr9	117448871	117449366	LTR|ERVL|LTR79	-	chr9	117431472	117466247	STRG.72913.1	-	117431472,117433256,117436870,117449057,117462547,117465934	117432451,117433406,117437754,117449177,117462718,117466247	0.909091
prostate_gland_male_adult_37_years	chr1	36419185	36419205	36419204	-	High_confidence	8	8	29	2.644751	4.021641	chr1	36419141	36419506	LINE|L2|L2b	+	chr1	36417910	36419293	OSCP1|ENST00000471369.1	-	36417910,36418990	36418255,36419293	0.758621
prostate_gland_male_adult_37_years	chr1	14419972	14419973	14419972	-	High_confidence	57	61	63	5.745494	3.820918	chr1	14419527	14421085	LTR|ERV1|LTR12C	-	chr1	14391401	14419964	STRG.873.2	-	14391401,14419493	14391578,14419964	0.936508
prostate_gland_male_adult_37_years	chr10	34973954	34973975	34973974	+	High_confidence	4	4	9	0.820785	2.500000	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34973983	34975576	AL392046.2|ENST00000635301.1	+	34973983,34974193,34974657	34974088,34974282,34975576	0.555556
prostate_gland_male_adult_37_years	chr11	77175232	77175304	77175302	+	High_confidence	5	9	20	1.823966	3.208695	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
prostate_gland_male_adult_37_years	chr18	59066595	59066596	59066595	-	RAMPAGE_only	13	13	14	1.276776	3.085055	chr18	59066396	59066766	LTR|ERVL-MaLR|MLT1A0	-	chr18	59057954	59062269	STRG.118647.1	-	59057954,59061860	59057969,59062269	0.571429
prostate_gland_male_adult_37_years	chr2	169840442	169840459	169840458	+	RAMPAGE_only	4	5	10	0.911983	2.521928	chr2	169840412	169841348	LTR|ERVL-MaLR|MLT1A1-int	-	chr2	169827507	170084131	UBR3|NM_172070.3	+	169827507,169872235,169875790,169877493,169878524,169891164,169895180,169896506,169905113,169906030,169914059,169923928,169924083,169925618,169926691,169926837,169927319,169928726,169932911,169942492,169946287,169947541,169949604,169958437,169986644,169994322,170001303,170006989,170008803,170015280,170029345,170040881,170055459,170061078,170061317,170073427,170079813,170080544,170081725	169828052,169872375,169875949,169877637,169878574,169891231,169895311,169896735,169905293,169906164,169914146,169923994,169924173,169925747,169926744,169926971,169927405,169928868,169933008,169942634,169946392,169947715,169950065,169958526,169986794,169994456,170001414,170007190,170008940,170015366,170029448,170040985,170055584,170061186,170061443,170073607,170080023,170080684,170084131	0.600000
prostate_gland_male_adult_37_years	chr8	99891978	99892057	99892056	-	RAMPAGE_only	8	8	52	4.742312	3.888155	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
prostate_gland_male_adult_37_years	chr6	17015816	17015817	17015816	+	RAMPAGE_only	73	78	94	8.572642	4.522712	chr6	17015186	17016323	LTR|ERV1|LTR12D	-	chr6	17102257	17131372	STMND1|NM_001190766.1	+	17102257,17114961,17120606,17129111,17130593	17102338,17115139,17120758,17129243,17131372	0.563830
prostate_gland_male_adult_37_years	chr1	89272854	89272901	89272890	-	High_confidence	25	25	184	16.780490	5.560927	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.978261
prostate_gland_male_adult_37_years	chr19	40280802	40280832	40280831	-	High_confidence	7	8	16	1.459173	2.608459	chr19	40280545	40281038	LINE|L2|L2a	+	chr19	40242039	40280832	AKT2|ENST00000486368.6	-	40242039,40242533,40255157,40256925,40265221,40280781	40242069,40242687,40255269,40257054,40265351,40280832	0.875000
prostate_gland_male_adult_37_years	chr1	17755293	17755335	17755334	+	High_confidence	12	20	60	5.471899	4.565166	chr1	17755152	17755695	LTR|ERVL|LTR41	+	chr1	17755312	17827063	ACTL8|NM_030812.2	+	17755312,17822984,17825766	17755504,17823356,17827063	0.966667
prostate_gland_male_adult_37_years	chr13	81226985	81226986	81226985	-	High_confidence	12	12	12	1.094380	3.022055	chr13	81226671	81227228	LTR|ERV1|LTR12_	-	chr13	81225864	81226983	LINC00564|ENST00000567258.1	-	81225864	81226983	0.583333
prostate_gland_male_adult_37_years	chr3	182873996	182874007	182873996	+	High_confidence	4	5	17	1.550371	2.777777	chr3	182874046	182874599	DNA|hAT-Charlie|Cheshire	+	chr3	182873965	182919063	ATP11B|ENST00000466758.5	+	182873965,182879495,182880878,182884752,182885950,182887585,182889409,182896699,182897302,182898606,182902480,182908458,182913860,182918022	182874015,182879649,182880947,182884898,182886010,182887713,182889548,182896765,182897406,182898772,182902566,182908505,182913994,182919063	1.000000
prostate_gland_male_adult_37_years	chr14	102235451	102235481	102235458	-	High_confidence	10	10	31	2.827148	4.155652	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.741935
prostate_gland_male_adult_37_years	chr14	19444668	19444681	19444668	-	RAMPAGE_only	6	6	14	1.276776	2.565448	chr14	19444118	19445081	LINE|L1|L1MA6	+	chr14	19372772	19451563	STRG.96768.5	-	19372772,19381176,19398019,19404616,19413353,19414561,19416287,19421623,19424164,19425605,19426732,19428541,19428874,19433768,19444566,19447095,19449507	19376011,19381312,19403109,19404735,19413520,19414606,19416358,19421694,19424302,19425712,19426988,19428715,19428989,19442569,19444679,19447209,19451563	0.928571
prostate_gland_male_adult_37_years	chr3	128335803	128335840	128335803	+	RAMPAGE_only	5	5	23	2.097561	2.959468	chr3	128335147	128336032	LINE|L2|L2a	-	chr3	128336903	128341788	EEFSEC|ENST00000483569.1	+	128336903,128341232	128337092,128341788	1.000000
prostate_gland_male_adult_37_years	chr4	131379753	131379766	131379759	+	High_confidence	37	38	152	13.862144	5.366200	chr4	131379190	131380342	LTR|ERV1|LTR12D	+	chr4	131379755	131380333	STRG.37927.1	+	131379755	131380333	0.986842
prostate_gland_male_adult_37_years	chr17	47067487	47067534	47067498	-	High_confidence	304	337	1161	105.881242	5.827356	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.925065
prostate_gland_male_adult_37_years	chr6	10492225	10492226	10492225	+	RAMPAGE_only	9	9	11	1.003181	3.095795	chr6	10491486	10492779	LTR|ERV1|LTR12D	+	chr6	10521282	10629368	GCNT2|ENST00000495262.6	+	10521282,10527473,10528630,10621350,10626416	10521417,10527660,10529836,10621443,10629368	0.636364
prostate_gland_male_adult_37_years	chr17	59651207	59651235	59651209	+	RAMPAGE_only	5	8	15	1.367975	2.985228	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59648239	59695112	STRG.115115.4	+	59648239,59651202,59655853,59660390,59661442,59663841,59664786,59666102,59666479,59666796,59668776,59673646,59674700,59676953,59679396,59680911,59681294,59681646,59682270,59682628,59682906,59683094,59683386,59683624,59683874,59685055,59685586,59687000,59690635,59693727	59648401,59651316,59656027,59660588,59661643,59663994,59664909,59666240,59666644,59666977,59668940,59673772,59674843,59677188,59679519,59681057,59681478,59681839,59682428,59682793,59683014,59683262,59683536,59683756,59683985,59685226,59685808,59687021,59690711,59695112	0.933333
prostate_gland_male_adult_37_years	chr5	54310533	54310573	54310533	-	High_confidence	47	47	201	18.330861	6.149738	chr5	54310446	54310538	DNA|TcMar-Tigger|Tigger15a	+	chr5	53884783	54310573	ARL15|NM_019087.2	-	53884783,54113201,54154579,54171783,54310431	53886713,54113410,54154639,54171928,54310573	0.791045
prostate_gland_male_adult_37_years	chr1	179312623	179312652	179312625	+	RAMPAGE_only	12	18	32	2.918346	4.093139	chr1	179312548	179312870	LTR|ERVL|LTR33	+	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.968750
prostate_gland_male_adult_37_years	chr2	106063236	106063243	106063240	+	High_confidence	9	9	28	2.553553	3.930270	chr2	106063052	106063413	LTR|ERVL-MaLR|MLT1A0	+	chr2	106063293	106078155	C2orf40|ENST00000409944.5	+	106063293,106064280,106071843,106073885,106077764	106063413,106064362,106071891,106074043,106078155	0.964286
prostate_gland_male_adult_37_years	chr12	124374442	124374443	124374442	-	RAMPAGE_only	8	8	11	1.003181	3.121928	chr12	124374395	124374495	LINE|CR1|L3b	+	chr12	124357696	124378685	STRG.92416.17	-	124357696,124363678,124372021,124374412,124378236	124362294,124363799,124372610,124374463,124378685	0.909091
prostate_gland_male_adult_37_years	chr6	143569332	143569347	143569346	-	High_confidence	10	10	18	1.641570	3.308271	chr6	143569122	143569483	LTR|ERVL-MaLR|MLT1J2	+	chr6	143554114	143569339	PHACTR2-AS1|NR_027113.2	-	143554114,143557998,143568859	143555230,143558131,143569339	0.611111
prostate_gland_male_adult_37_years	chr17	47056592	47056593	47056592	-	RAMPAGE_only	6	6	6	0.547190	2.584963	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46998699	47067469	AC068152.1|ENST00000571901.5	-	46998699,47021581,47033277,47054117,47056459,47067413	46998817,47021721,47033381,47054213,47056753,47067469	0.500000
prostate_gland_male_adult_37_years	chr1	105956715	105956732	105956715	+	High_confidence	6	6	13	1.185578	2.661226	chr1	105956478	105956938	LTR|ERVL|MER70A	+	chr1	105956715	105967623	AL355306.2|ENST00000634776.1	+	105956715,105961469,105965679	105956847,105961523,105967623	1.000000
prostate_gland_male_adult_37_years	chr7	137268141	137268172	137268141	-	High_confidence	7	7	30	2.735949	3.978334	chr7	137267941	137268351	LTR|ERV1|HERVE_a-int	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.966667
prostate_gland_male_adult_37_years	chr7	24597079	24597101	24597079	+	RAMPAGE_only	3	3	12	1.094380	2.751629	chr7	24596755	24597281	LINE|L2|L2	-	chr7	24574012	24666060	MPP6|ENST00000430180.5	+	24574012,24623665,24641715,24649611,24650484,24663589,24665587,24666020	24574278,24623784,24641868,24649764,24650712,24663721,24665687,24666060	0.916667
prostate_gland_male_adult_37_years	chr13	26013338	26013370	26013349	+	High_confidence	10	10	29	2.644751	3.923252	chr13	26013392	26013701	SINE|Alu|AluSq2	+	chr13	26013355	26025851	STRG.93172.2	+	26013355,26019887	26013443,26025851	0.965517
prostate_gland_male_adult_37_years	chrX	48683361	48683363	48683361	+	High_confidence	13	23	23	2.097561	3.499228	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.913043
prostate_gland_male_adult_37_years	chr1	15588519	15588520	15588519	-	RAMPAGE_only	53	53	69	6.292684	4.915716	chr1	15587991	15588747	LTR|ERV1|LTR12D	-	chr1	15586135	15603626	AL121992.1|ENST00000428945.1	-	15586135,15603088	15588442,15603626	0.985507
prostate_gland_male_adult_37_years	chr10	46045735	46045736	46045735	-	High_confidence	13	13	13	1.185578	2.815072	chr10	46045616	46045784	DNA|hAT-Charlie|MER5B	+	chr10	46033304	46046269	MSMB|NM_002443.3	-	46033304,46038965,46039985,46046234	46033551,46039071,46040091,46046269	1.000000
prostate_gland_male_adult_37_years	chr6	4844312	4844351	4844312	+	High_confidence	5	5	13	1.185578	3.026987	chr6	4842264	4844381	LINE|L1|L1PB1	-	chr6	4843965	4892347	STRG.47655.8	+	4843965,4891712	4844503,4892347	0.923077
prostate_gland_male_adult_37_years	chr13	86792195	86792285	86792210	-	High_confidence	8	8	35	3.191941	4.036007	chr13	86792081	86793348	LTR|ERV1|LTR12C	+	chr13	86791758	86792205	STRG.95557.2	-	86791758	86792205	0.828571
prostate_gland_male_adult_37_years	chr17	17487262	17487301	17487300	+	RAMPAGE_only	20	21	39	3.556734	4.007943	chr17	17486169	17487716	LTR|ERV1|LTR12C	+	chr17	17485021	17488372	MED9|ENST00000624097.1	+	17485021	17488372	0.897436
prostate_gland_male_adult_37_years	chr7	128709075	128709090	128709089	+	High_confidence	5	5	12	1.094380	2.550341	chr7	128708844	128709287	LTR|ERVL-MaLR|MLT1J	+	chr7	128709089	128723426	FAM71F1|ENST00000493738.5	+	128709089,128713922,128716812,128718830,128723196	128709207,128714009,128716997,128719083,128723426	0.750000
prostate_gland_male_adult_37_years	chr7	79767854	79767881	79767879	+	High_confidence	5	11	18	1.641570	2.927451	chr7	79767147	79768527	LTR|ERV1|LTR12C	-	chr7	79768027	79974161	GNAI1|ENST00000650351.1	+	79768027,79772928,79811731,79915066,79956969,79969547	79768129,79773000,79811838,79915167,79957052,79974161	0.500000
prostate_gland_male_adult_37_years	chrX	101293054	101293083	101293082	-	High_confidence	5	8	15	1.367975	3.378783	chrX	101292998	101293671	LINE|RTE-X|L4_A_Mam	+	chrX	101268252	101293071	TAF7L|NM_024885.3	-	101268252,101275221,101275999,101276306,101277605,101278048,101278993,101281719,101282326,101283449,101286574,101287477,101292789	101269237,101275281,101276112,101276528,101277719,101278121,101279035,101281775,101282453,101283583,101286653,101287545,101293071	0.933333
prostate_gland_male_adult_37_years	chr19	52093952	52094013	52093952	-	High_confidence	5	5	20	1.823966	3.721612	chr19	52093852	52094032	SINE|Alu|AluJb	+	chr19	52076907	52093899	ZNF841|ENST00000599430.1	-	52076907,52084786,52088936,52093845	52077084,52084878,52089002,52093899	0.800000
prostate_gland_male_adult_37_years	chr6	69718614	69718634	69718633	-	RAMPAGE_only	6	6	10	0.911983	2.947703	chr6	69718461	69718829	LTR|ERVL-MaLR|THE1C	-	chr6	69675973	69749408	LMBRD1|ENST00000650473.1	-	69675973,69676449,69697562,69699042,69700764,69701442,69701888,69713644,69718955,69737941,69741788,69743783,69743987,69749340	69676271,69676541,69697641,69699192,69700869,69701545,69701953,69713797,69719081,69738015,69741877,69743881,69744047,69749408	0.900000
prostate_gland_male_adult_37_years	chr1	37519041	37519042	37519041	+	High_confidence	198	198	199	18.148464	5.853312	chr1	37518068	37519559	LTR|ERV1|LTR12C	+	chr1	37519030	37531577	STRG.1919.1	+	37519030,37523032,37531028	37519574,37523168,37531577	0.899497
prostate_gland_male_adult_37_years	chr6	3716473	3716477	3716473	-	RAMPAGE_only	17	17	31	2.827148	3.789898	chr6	3716408	3716680	SINE|Alu|AluJr	+	chr6	3705257	3720099	STRG.47400.8	-	3705257,3719362	3716656,3720099	0.967742
prostate_gland_male_adult_37_years	chr6	20321088	20321122	20321121	+	High_confidence	19	19	36	3.283139	3.926734	chr6	20320048	20321457	LTR|ERV1|LTR12C	+	chr6	20321104	20332118	STRG.48448.1	+	20321104,20331705	20321575,20332118	1.000000
prostate_gland_male_adult_37_years	chr2	165957411	165957437	165957417	+	High_confidence	6	6	16	1.459173	3.155639	chr2	165956404	165957623	LTR|ERV1|LTR12E	-	chr2	165957417	166036400	LOC102724058|NR_110598.1	+	165957417,166015612,166027116,166036065	165957592,166015729,166027229,166036400	0.500000
prostate_gland_male_adult_37_years	chr12	129109673	129109674	129109673	+	High_confidence	22	24	28	2.553553	3.271161	chr12	129109479	129109833	LTR|ERVL-MaLR|THE1A	+	chr12	129109689	129113298	LOC283352|NR_104172.1	+	129109689,129110992,129111419,129113064	129109757,129111139,129111515,129113298	0.892857
prostate_gland_male_adult_37_years	chr2	95121537	95121558	95121537	-	High_confidence	4	4	9	0.820785	2.725481	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	1.000000
prostate_gland_male_adult_37_years	chr12	52117930	52117931	52117930	-	High_confidence	16	20	23	2.097561	3.293455	chr12	52116006	52118404	LTR|ERV1|HERVE-int	-	chr12	52086301	52118551	STRG.89187.4	-	52086301,52087415,52094678,52104158,52108068,52115868	52086385,52087705,52094849,52106001,52108209,52118551	0.956522
prostate_gland_male_adult_37_years	chr5	134613081	134613120	134613081	-	High_confidence	17	17	54	4.924709	4.532573	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.851852
prostate_gland_male_adult_37_years	chr21	40728051	40728063	40728058	-	RAMPAGE_only	10	12	23	2.097561	3.427333	chr21	40727476	40728316	LINE|L2|L2a	+	chr21	40012415	40847113	DSCAM|NR_073202.1	-	40012415,40042370,40044077,40051957,40055724,40062868,40075036,40078717,40080151,40083907,40085601,40087169,40093720,40124194,40133853,40142557,40144490,40167217,40178926,40187130,40187890,40189041,40276096,40296054,40312080,40338100,40339118,40347669,40353464,40369098,40692809,40708453,40846618	40013386,40042673,40044275,40052107,40055840,40062899,40075053,40078977,40080340,40084006,40085765,40087287,40093874,40124328,40134009,40142704,40144731,40167288,40179094,40187259,40187987,40189238,40276270,40296174,40312359,40338376,40339415,40347945,40353743,40369245,40692956,40708771,40847113	0.913043
prostate_gland_male_adult_37_years	chr5	8840353	8840414	8840376	-	High_confidence	4	4	18	1.641570	3.350209	chr5	8840276	8841624	LTR|ERV1|LTR12D	+	chr5	8840007	8840772	STRG.40411.1	-	8840007	8840772	0.833333
prostate_gland_male_adult_37_years	chr3	156455937	156455978	156455956	+	High_confidence	3	3	16	1.459173	3.189898	chr3	156455855	156455959	LTR|ERVL-MaLR|MLT1L	-	chr3	156455992	156514405	KCNAB1|ENST00000476362.5	+	156455992,156457452,156459826,156463701,156465642,156474649,156514363	156456120,156457532,156459871,156463746,156465686,156474820,156514405	0.500000
prostate_gland_male_adult_37_years	chr7	53811868	53811889	53811868	-	High_confidence	3	3	12	1.094380	2.855389	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.750000
prostate_gland_male_adult_37_years	chr4	75127183	75127252	75127224	-	RAMPAGE_only	11	16	70	6.383882	5.073366	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.900000
prostate_gland_male_adult_37_years	chr3	44901276	44901280	44901276	+	RAMPAGE_only	15	16	24	2.188760	4.088779	chr3	44901254	44901354	SINE|MIR|MIR	-	chr3	44874634	44914656	STRG.25340.1	+	44874634,44882080,44885324,44887688,44890602,44893576,44896708,44901523,44901792,44903883,44906948,44910089,44910957,44911269,44913583	44874697,44882215,44885498,44887795,44890732,44893695,44896816,44901698,44901931,44903987,44907200,44910368,44911127,44911406,44914656	0.708333
prostate_gland_male_adult_37_years	chr14	37606676	37606705	37606687	+	RAMPAGE_only	4	4	13	1.185578	3.238901	chr14	37606287	37606711	LTR|ERVL|LTR33	+	chr14	37610988	37670039	STRG.97674.9	+	37610988,37622049,37669957	37611361,37623003,37670039	0.615385
prostate_gland_male_adult_37_years	chr12	56157318	56157368	56157338	+	High_confidence	12	12	30	2.735949	3.389898	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.766667
prostate_gland_male_adult_37_years	chr19	50857051	50857067	50857051	+	High_confidence	5	5	12	1.094380	2.855389	chr19	50856880	50857192	SINE|Alu|AluSx	+	chr19	50857390	50860130	KLK3|ENST00000601812.1	+	50857390,50858458,50859971	50858315,50858595,50860130	0.583333
prostate_gland_male_adult_37_years	chr6	34539721	34539751	34539750	-	RAMPAGE_only	7	7	16	1.459173	3.030639	chr6	34539744	34539820	SINE|MIR|MIR3	-	chr6	34537801	34556314	STRG.49447.2	-	34537801,34539249,34539514,34544019,34555928	34538452,34539396,34541181,34544484,34556314	0.937500
prostate_gland_male_adult_37_years	chr11	82403882	82403913	82403912	-	High_confidence	7	7	14	1.276776	3.026987	chr11	82403718	82405096	LTR|ERV1|LTR12C	+	chr11	81879850	82403913	MIR4300HG|NR_120571.1	-	81879850,81882153,82015607,82096460,82099973,82349925,82356511,82403678	81880167,81882296,82015734,82096608,82100207,82350004,82356628,82403913	0.500000
prostate_gland_male_adult_37_years	chr6	89656057	89656058	89656057	-	RAMPAGE_only	8	8	11	1.003181	2.845351	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642723	89657457	STRG.51628.4	-	89642723,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699	89644407,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89657457	0.909091
prostate_gland_male_adult_37_years	chr8	3183046	3183085	3183084	-	High_confidence	12	12	47	4.286321	3.432497	chr8	3182937	3183057	SINE|Alu|AluY	-	chr8	2951201	3183029	STRG.62687.1	-	2951201,2955588,2957695,2961140,2962465,2963221,2965774,2966569,2973116,2974450,2978611,2998010,2999957,3018476,3029318,3052461,3087096,3091515,3096848,3106527,3107717,3108602,3110157,3118398,3142464,3151396,3157896,3162158,3181109,3182990	2951275,2955768,2957807,2961214,2962639,2963395,2965954,2966746,2973299,2974624,2978800,2998184,3000131,3018650,3029513,3052647,3087285,3091662,3097037,3106641,3107798,3108748,3110335,3118587,3142674,3151513,3157966,3162277,3181214,3183029	0.893617
prostate_gland_male_adult_37_years	chr14	44912623	44912638	44912637	-	High_confidence	7	7	20	1.823966	3.642150	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.750000
prostate_gland_male_adult_37_years	chr6	3719595	3719624	3719623	-	High_confidence	5	5	11	1.003181	2.521928	chr6	3719558	3721329	LTR|ERV1|LTR12C	-	chr6	3688323	3720099	STRG.47400.6	-	3688323,3719362	3688641,3720099	0.545455
prostate_gland_male_adult_37_years	chr11	72111482	72111497	72111496	-	High_confidence	5	6	9	0.820785	2.947703	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72108817	72111497	ANAPC15|ENST00000538117.5	-	72108817,72109228,72110087,72110543,72111156,72111411	72108875,72109341,72110225,72110603,72111281,72111497	1.000000
prostate_gland_male_adult_37_years	chr21	38121472	38121492	38121472	+	High_confidence	64	66	154	14.044540	5.523762	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.922078
prostate_gland_male_adult_37_years	chr11	67848672	67848702	67848695	-	High_confidence	13	16	44	4.012726	4.268378	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67847105	67848715	STRG.82991.1	-	67847105,67848565	67847989,67848715	1.000000
prostate_gland_male_adult_37_years	chr4	48255360	48255379	48255360	-	RAMPAGE_only	2	3	9	0.820785	2.725481	chr4	48255094	48255505	LTR|ERVL-MaLR|MLT1K	-	chr4	48135782	48269797	TEC|NM_003215.2	-	48135782,48138664,48138903,48141354,48145078,48145407,48146324,48149556,48150862,48156679,48163701,48167777,48168585,48170247,48171367,48176081,48228476,48269751	48137499,48138822,48139022,48141419,48145295,48145579,48146399,48149690,48150942,48156734,48163767,48167953,48168626,48170376,48171449,48176186,48228659,48269797	0.777778
prostate_gland_male_adult_37_years	chr10	7619672	7619673	7619672	-	High_confidence	32	36	40	3.647933	3.313765	chr10	7619498	7619860	LTR|ERVL-MaLR|THE1D	-	chr10	7559269	7619673	ITIH5|NM_032817.5	-	7559269,7566029,7569667,7573141,7576452,7579754,7585900,7615981,7617112,7619580	7563384,7566407,7569784,7573195,7577012,7580064,7586069,7616098,7617282,7619673	0.975000
prostate_gland_male_adult_37_years	chrX	125155015	125155016	125155015	-	High_confidence	63	63	72	6.566279	4.297042	chrX	125154598	125156024	LTR|ERV1|LTR12C	-	chrX	125154563	125155002	STRG.136102.1	-	125154563	125155002	0.902778
prostate_gland_male_adult_37_years	chr4	123539025	123539027	123539026	+	High_confidence	23	42	42	3.830329	4.433635	chr4	123537735	123539444	LTR|ERV1|LTR12C	+	chr4	123538918	123539661	STRG.37598.1	+	123538918	123539661	0.976190
prostate_gland_male_adult_37_years	chr11	65382795	65382800	65382795	-	High_confidence	2	2	7	0.638388	2.521641	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375191	65382674	SLC25A45|NM_182556.3	-	65375191,65376817,65379375,65379866,65380131,65381914,65382485	65376675,65377076,65379561,65379938,65380175,65381969,65382674	0.571429
prostate_gland_male_adult_37_years	chr17	60887052	60887071	60887070	+	High_confidence	7	8	15	1.367975	3.093069	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.933333
prostate_gland_male_adult_37_years	chr1	161118868	161118875	161118868	+	High_confidence	5	5	12	1.094380	2.625815	chr1	161118894	161118942	LINE|L2|L2c	+	chr1	161118907	161119943	NIT1|ENST00000461376.1	+	161118907,161119508,161119818	161119388,161119612,161119943	0.833333
prostate_gland_male_adult_37_years	chr5	147382883	147382900	147382883	+	High_confidence	15	15	38	3.465536	3.753956	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.789474
prostate_gland_male_adult_37_years	chr2	21649509	21649510	21649509	-	High_confidence	10	10	14	1.276776	2.719295	chr2	21649404	21649584	SINE|MIR|MIR3	+	chr2	21638183	21649502	AC009411.1|ENST00000416032.6	-	21638183,21647537,21649451	21638538,21647752,21649502	0.785714
prostate_gland_male_adult_37_years	chr13	113605543	113605588	113605571	+	RAMPAGE_only	4	4	16	1.459173	3.375000	chr13	113605404	113605711	LTR|ERVL-MaLR|MLT1F	-	chr13	113585425	113633287	TFDP1|ENST00000453989.2	+	113585425,113585773,113610995,113623179,113631622,113633119	113585677,113585849,113611062,113623286,113631744,113633287	0.687500
prostate_gland_male_adult_37_years	chr1	188013619	188013662	188013619	+	High_confidence	2	2	11	1.003181	2.913977	chr1	188012480	188013856	LTR|ERV1|LTR12C	-	chr1	188013641	188144763	AL136372.2|ENST00000648838.1	+	188013641,188042891,188097138,188143896	188013999,188042987,188097218,188144763	0.909091
prostate_gland_male_adult_37_years	chr12	47223495	47223554	47223547	+	High_confidence	35	37	65	5.927890	4.929759	chr12	47223277	47223596	LINE|L2|L2	-	chr12	47223544	47236663	STRG.88934.3	+	47223544,47235006	47224039,47236663	0.676923
prostate_gland_male_adult_37_years	chr7	72412340	72412341	72412340	-	High_confidence	54	57	62	5.654295	4.773729	chr7	72412058	72412621	LTR|ERV1|LTR12_	-	chr7	71779490	72412373	CALN1|ENST00000395275.6	-	71779490,71810335,72023656,72106150,72278685,72403250,72412057	71787902,71810492,72023769,72106294,72278810,72403442,72412373	0.580645
prostate_gland_male_adult_37_years	chr4	79827470	79827502	79827494	+	High_confidence	99	102	286	26.082718	6.459141	chr4	79827343	79827787	LTR|ERVL-MaLR|MLT1D	+	chr4	79827470	79863247	PCAT4|NR_026555.1	+	79827470,79861289	79827603,79863247	0.604895
prostate_gland_male_adult_37_years	chr7	10085397	10085408	10085399	-	High_confidence	4	6	11	1.003181	2.845351	chr7	10085029	10085727	LTR|ERV1|MER50	-	chr7	10084975	10085406	STRG.54788.1	-	10084975	10085406	0.727273
prostate_gland_male_adult_37_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	16	16	17	1.550371	3.155639	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.941176
prostate_gland_male_adult_37_years	chr11	119046591	119046724	119046591	-	RAMPAGE_only	22	22	132	12.038177	4.744032	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	1.000000
prostate_gland_male_adult_37_years	chr1	23417917	23417997	23417917	-	High_confidence	65	65	274	24.988338	6.021347	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23418655	STRG.1229.3	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903	23384096,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418655	0.970803
prostate_gland_male_adult_37_years	chr22	24207469	24207470	24207469	+	RAMPAGE_only	33	33	43	3.921527	4.499228	chr22	24207199	24207551	LINE|L1|L1M5	-	chr22	24214372	24219510	STRG.129617.2	+	24214372	24219510	0.744186
prostate_gland_male_adult_37_years	chr8	124171528	124171529	124171528	-	High_confidence	14	15	16	1.459173	3.452820	chr8	124171344	124171724	LTR|ERVL-MaLR|THE1D	-	chr8	124046070	124171522	FER1L6-AS2|NR_103547.1	-	124046070,124047556,124058787,124060167,124171427	124046776,124047693,124058972,124060792,124171522	0.625000
prostate_gland_male_adult_37_years	chr9	98943559	98943578	98943575	+	High_confidence	7	7	23	2.097561	3.468577	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
prostate_gland_male_adult_37_years	chr19	3743793	3743810	3743793	+	High_confidence	7	7	16	1.459173	2.602217	chr19	3743650	3743892	LTR|ERVL-MaLR|MLT1J	-	chr19	3743662	3747894	TJP3|ENST00000591493.1	+	3743662,3746010,3746484,3746775,3747793	3744034,3746081,3746695,3746876,3747894	1.000000
prostate_gland_male_adult_37_years	chr12	93943600	93943609	93943608	-	High_confidence	4	5	11	1.003181	2.663533	chr12	93943355	93943782	LTR|ERV1|MER39	+	chr12	93894964	93943606	LOC105369911|NR_135017.1	-	93894964,93908925,93943544	93895365,93909005,93943606	0.636364
prostate_gland_male_adult_37_years	chr16	19393734	19393735	19393734	-	High_confidence	37	39	45	4.103924	4.172405	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19392212	19393468	AC130456.7|ENST00000623838.1	-	19392212	19393468	0.622222
prostate_gland_male_adult_37_years	chr1	51846740	51846741	51846740	-	RAMPAGE_only	14	16	21	1.915165	3.721928	chr1	51846449	51847931	LTR|ERV1|LTR12C	-	chr1	51789211	51840454	NRDC|ENST00000485608.5	-	51789211,51789567,51790532,51790899,51791577,51792045,51792376,51794471,51794822,51798248,51800555,51803813,51805509,51806793,51809314,51810280,51811993,51814034,51814550,51814692,51816311,51818065,51819799,51821497,51823663,51825286,51827795,51834016,51836130,51836368,51840225	51789433,51789657,51790649,51790990,51791661,51792098,51792424,51794610,51794854,51798411,51800683,51803964,51805561,51806913,51809401,51810404,51812098,51814089,51814609,51814813,51816389,51818135,51819873,51821555,51823786,51825382,51827869,51834170,51836212,51836438,51840454	0.714286
prostate_gland_male_adult_37_years	chr16	75318102	75318135	75318102	-	RAMPAGE_only	4	4	13	1.185578	2.688722	chr16	75317828	75318154	SINE|Alu|AluSx	+	chr16	75293697	75306545	CFDP1|ENST00000570103.5	-	75293697,75305023,75306386	75294042,75305182,75306545	0.923077
prostate_gland_male_adult_37_years	chr12	26832766	26832775	26832766	-	High_confidence	7	10	15	1.367975	2.521641	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.933333
prostate_gland_male_adult_37_years	chr8	143281646	143281687	143281686	-	High_confidence	40	42	135	12.311772	4.601262	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.822222
prostate_gland_male_adult_37_years	chr9	113393734	113393746	113393745	-	RAMPAGE_only	3	5	9	0.820785	2.500000	chr9	113393657	113393698	LINE|L2|L2c	-	chr9	113392131	113397402	ALAD|ENST00000452726.1	-	113392131,113393446,113397045	113392169,113393634,113397402	0.888889
prostate_gland_male_adult_37_years	chr15	39420950	39421029	39420950	-	High_confidence	5	5	40	3.647933	4.477567	chr15	39420570	39426588	LINE|L1|L1PA2	+	chr15	38885253	39420975	STRG.102929.1	-	38885253,38886696,38974154,39071502,39420543	38885628,38886929,38974235,39071608,39420975	0.750000
prostate_gland_male_adult_37_years	chr15	78245687	78245688	78245687	-	High_confidence	102	103	107	9.758220	4.212986	chr15	78245271	78246702	LTR|ERV1|LTR12C	-	chr15	78170913	78245688	ACSBG1|ENST00000560817.5	-	78170913,78173592,78174384,78178613,78179549,78180754,78181968,78182465,78182704,78245268	78171529,78173839,78174524,78178831,78179780,78180936,78182145,78182615,78182785,78245688	0.925234
prostate_gland_male_adult_37_years	chr3	107189638	107189654	107189653	-	RAMPAGE_only	20	20	44	4.012726	4.343081	chr3	107189325	107190418	LTR|ERVL-MaLR|MLT1A0-int	-	chr3	107109789	107240589	LINC00882|ENST00000607801.5	-	107109789,107129887,107240442	107110004,107129992,107240589	0.568182
prostate_gland_male_adult_37_years	chr1	192986942	192986943	192986942	-	RAMPAGE_only	13	15	15	1.367975	2.789898	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192935795	192957713	AL390957.1|ENST00000647436.1	-	192935795,192957303	192935903,192957713	0.933333
prostate_gland_male_adult_37_years	chr9	33749404	33749405	33749404	-	High_confidence	35	36	45	4.103924	4.161973	chr9	33748869	33749969	LTR|ERV1|LTR12D	-	chr9	33748639	33749400	STRG.69183.1	-	33748639	33749400	0.933333
prostate_gland_male_adult_37_years	chr8	20973948	20973955	20973948	+	High_confidence	5	5	16	1.459173	3.139572	chr8	20973910	20974063	DNA|hAT-Tip100|MER96	+	chr8	20973796	20975029	LINC02153|ENST00000517573.1	+	20973796,20974803	20974522,20975029	0.937500
prostate_gland_male_adult_37_years	chr14	103848813	103848814	103848813	-	High_confidence	7	9	9	0.820785	2.503258	chr14	103848808	103849048	SINE|MIR|MIRb	+	chr14	103778754	103848898	STRG.101115.8	-	103778754,103784794,103797370,103848271	103778821,103784914,103797518,103848898	0.888889
prostate_gland_male_adult_37_years	chr19	3062920	3062925	3062922	-	High_confidence	9	14	27	2.462354	3.493661	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.925926
prostate_gland_male_adult_37_years	chr6	68920456	68920457	68920456	+	RAMPAGE_only	23	23	29	2.644751	2.570598	chr6	68920235	68920537	SINE|Alu|AluY	+	chr6	68638789	68994038	STRG.50599.1	+	68638789,68930558,68936518,68943829,68956023,68956644,68974762,68975233,68993767	68639432,68930669,68936680,68943994,68956188,68956809,68974864,68975340,68994038	0.758621
prostate_gland_male_adult_37_years	chr5	127702193	127702207	127702206	+	RAMPAGE_only	5	5	14	1.276776	2.931209	chr5	127702088	127702262	SINE|Alu|AluYh3	-	chr5	127703388	127941517	CCDC192|NM_001317938.1	+	127703388,127707708,127754267,127797102,127798105,127875537,127941181	127703507,127707760,127754375,127797234,127798162,127875661,127941517	0.714286
prostate_gland_male_adult_37_years	chr8	53523862	53523964	53523890	-	High_confidence	19	19	136	12.402971	5.765972	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
prostate_gland_male_adult_37_years	chr19	35161587	35161612	35161611	+	High_confidence	4	4	21	1.915165	3.594466	chr19	35161248	35161749	LTR|ERVL-MaLR|MLT1K	-	chr19	35160762	35169880	FXYD5|ENST00000586925.1	+	35160762,35166250,35169565	35160801,35166325,35169880	0.761905
prostate_gland_male_adult_37_years	chr8	2623334	2623383	2623334	-	High_confidence	3	3	16	1.459173	3.323231	chr8	2623130	2623292	LINE|L1|L1ME3B	-	chr8	2589984	2623365	AC245123.1|ENST00000618928.4	-	2589984,2595564,2596624,2604780,2623294	2591249,2595703,2596704,2604930,2623365	0.687500
prostate_gland_male_adult_37_years	chr1	248731098	248731109	248731098	-	RAMPAGE_only	4	4	10	0.911983	2.646439	chr1	248730810	248731492	LTR|ERV1|MER50B	-	chr1	248718648	248745279	LYPD8|ENST00000566597.5	-	248718648,248721269,248745141	248718807,248722205,248745279	0.500000
prostate_gland_male_adult_37_years	chr10	102449836	102449839	102449836	+	High_confidence	27	27	52	4.742312	4.405186	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449841	102456215	STRG.78807.3	+	102449841,102455336	102451018,102456215	0.980769
prostate_gland_male_adult_37_years	chr5	23951339	23951366	23951365	+	High_confidence	9	9	58	5.289502	4.491457	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951350	24060347	STRG.40884.1	+	23951350,23975996,23977780,24060178	23951803,23976050,23977922,24060347	0.862069
prostate_gland_male_adult_37_years	chr6	57394719	57394730	57394719	+	RAMPAGE_only	10	11	24	2.188760	4.084963	chr6	57392680	57397716	LINE|L1|L1PB1	-	chr6	57317623	57646849	PRIM2|ENST00000615550.4	+	57317623,57318436,57320456,57324200,57325924,57379900,57382030,57507386,57532410,57537439,57601092,57606374,57632132,57645927	57317701,57318599,57320560,57324280,57326045,57379996,57382168,57507454,57532483,57537625,57601219,57606457,57632201,57646849	0.875000
prostate_gland_male_adult_37_years	chr3	132259991	132260033	132260032	-	High_confidence	6	12	27	2.462354	4.532665	chr3	132259704	132260165	LTR|ERVL|LTR33	+	chr3	132239167	132260903	STRG.30029.16	-	132239167,132259783	132244336,132260903	0.629630
prostate_gland_male_adult_37_years	chr13	43055406	43055412	43055406	+	High_confidence	43	45	63	5.745494	4.472769	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43055370	43059922	STRG.94084.1	+	43055370,43059393	43055543,43059922	0.523810
prostate_gland_male_adult_37_years	chr16	2757801	2757899	2757871	+	High_confidence	12	12	111	10.123013	5.338668	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.945946
prostate_gland_male_adult_37_years	chr4	151955976	151955999	151955976	+	High_confidence	4	4	8	0.729587	2.500000	chr4	151955788	151956326	LTR|ERVL-MaLR|MLT1F1	+	chr4	151955990	151969381	AC097375.3|ENST00000515329.1	+	151955990,151966995	151956256,151969381	1.000000
prostate_gland_male_adult_37_years	chr5	25963826	25963839	25963826	+	High_confidence	8	8	22	2.006363	3.284184	chr5	25963846	25964173	LTR|ERV1|MER65-int	+	chr5	25963293	25965030	STRG.40937.1	+	25963293,25963757	25963358,25965030	0.818182
prostate_gland_male_adult_37_years	chr4	172156075	172156091	172156075	+	RAMPAGE_only	13	16	33	3.009544	3.760621	chr4	172155984	172156360	LTR|ERV1|MER48	-	chr4	172052444	173040100	GALNTL6|ENST00000508122.5	+	172052444,172229655,172311613,172348522,172809360,172813539,172882789,172931160,172952036,173009177,173021475,173039932	172052531,172229764,172311752,172348689,172809546,172813723,172882907,172931268,172952258,173009294,173021625,173040100	0.848485
prostate_gland_male_adult_37_years	chr7	53811930	53811942	53811930	-	High_confidence	15	15	44	4.012726	4.737323	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.818182
prostate_gland_male_adult_37_years	chr4	28402917	28402951	28402950	-	High_confidence	4	4	11	1.003181	2.913977	chr4	28402359	28403146	LTR|ERV1|LTR1A2	-	chr4	28381496	28402864	AC109588.1|ENST00000515720.1	-	28381496,28393203,28394195,28402651	28381911,28393350,28394300,28402864	0.545455
prostate_gland_male_adult_37_years	chr12	93943636	93943642	93943641	-	High_confidence	3	3	7	0.638388	2.584963	chr12	93943355	93943782	LTR|ERV1|MER39	+	chr12	93894964	93943606	LOC105369911|NR_135017.1	-	93894964,93908925,93943544	93895365,93909005,93943606	0.571429
prostate_gland_male_adult_37_years	chr14	92733111	92733135	92733120	-	RAMPAGE_only	6	8	34	3.100743	4.381580	chr14	92732868	92733169	SINE|Alu|AluSg	+	chr14	92703846	92748603	LGMN|ENST00000557609.5	-	92703846,92704639,92706482,92709671,92711658,92711836,92712804,92713822,92714375,92717379,92718746,92732648,92748488	92704361,92704707,92706653,92709872,92711748,92711955,92712871,92713885,92714451,92717461,92718844,92732815,92748603	0.852941
prostate_gland_male_adult_37_years	chr6	79631273	79631329	79631302	+	High_confidence	98	99	301	27.450692	6.070701	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.993355
prostate_gland_male_adult_37_years	chr14	19368202	19368203	19368202	-	RAMPAGE_only	7	7	7	0.638388	2.521641	chr14	19367863	19368438	LINE|L1|L1ME1	+	chr14	19352955	19357966	STRG.96768.23	-	19352955,19356870	19355407,19357966	1.000000
prostate_gland_male_adult_37_years	chr1	154435108	154435156	154435155	+	High_confidence	9	9	31	2.827148	3.913401	chr1	154435204	154435227	SINE|MIR|MIRc	+	chr1	154435009	154465314	IL6R|ENST00000507256.1	+	154435009,154448124,154449910,154454487,154465133	154435156,154448171,154449980,154454581,154465314	0.774194
prostate_gland_male_adult_37_years	chr7	90237068	90237098	90237068	+	RAMPAGE_only	9	10	15	1.367975	2.789898	chr7	90236977	90237152	LTR|ERVL-MaLR|MLT1J1	+	chr7	90213819	90237678	STEAP2|NM_001040666.1	+	90213819,90216490,90225049,90226970,90229871,90232336,90236890	90213860,90216603,90225574,90227498,90230036,90232484,90237678	0.933333
prostate_gland_male_adult_37_years	chr18	51218316	51218334	51218333	-	High_confidence	9	11	41	3.739131	3.997670	chr18	51218274	51218543	DNA|TcMar-Tigger|Tigger16b	+	chr18	51176820	51218304	MEX3C|ENST00000591040.1	-	51176820,51218261	51177576,51218304	0.902439
prostate_gland_male_adult_37_years	chr8	61825324	61825343	61825324	+	High_confidence	4	4	12	1.094380	2.663533	chr8	61825360	61825600	LTR|ERVL-MaLR|MLT1E1	+	chr8	61825327	61852705	AC025524.2|ENST00000523042.5	+	61825327,61827818,61834872,61852658	61825532,61827977,61834996,61852705	0.500000
prostate_gland_male_adult_37_years	chr9	68975783	68975809	68975808	-	High_confidence	8	8	18	1.641570	3.058814	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.555556
prostate_gland_male_adult_37_years	chr10	30902140	30902141	30902140	-	High_confidence	50	50	66	6.019089	4.328749	chr10	30901724	30903353	LTR|ERV1|LTR12C	-	chr10	30901174	30902048	STRG.75339.1	-	30901174	30902048	0.984848
prostate_gland_male_adult_37_years	chr9	20658310	20658359	20658358	+	High_confidence	5	5	20	1.823966	3.546439	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658352	20789675	STRG.68728.1	+	20658352,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789675	0.900000
prostate_gland_male_adult_37_years	chr1	167937075	167937104	167937103	+	High_confidence	7	7	26	2.371156	3.433270	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167937152	167993330	DCAF6|ENST00000455334.5	+	167937152,167951799,167966628,167974829,167987494,167991203,167993225	167937252,167951861,167966721,167975015,167987608,167991339,167993330	0.846154
prostate_gland_male_adult_37_years	chr1	205662506	205662507	205662506	-	RAMPAGE_only	71	72	81	7.387063	4.848164	chr1	205662491	205662590	SINE|MIR|MIR3	+	chr1	205657850	205680459	STRG.8675.6	-	205657850,205661860,205664484,205680393	205659671,205663618,205664886,205680459	0.975309
prostate_gland_male_adult_37_years	chr3	153155302	153155303	153155302	-	High_confidence	28	28	32	2.918346	3.691428	chr3	153154903	153156285	LTR|ERV1|LTR12C	-	chr3	153152877	153155038	STRG.31019.1	-	153152877,153154831	153152919,153155038	0.718750
prostate_gland_male_adult_37_years	chr18	73264421	73264464	73264421	-	High_confidence	6	6	15	1.367975	2.502736	chr18	73264307	73264608	SINE|Alu|AluY	+	chr18	73200627	73264445	AC079062.1|ENST00000583405.5	-	73200627,73255812,73264239	73200789,73255918,73264445	0.533333
prostate_gland_male_adult_37_years	chr9	88077849	88077878	88077849	-	High_confidence	4	4	15	1.367975	3.189898	chr9	88077653	88078060	LTR|ERVL-MaLR|MLT1A	-	chr9	88066434	88077900	LOC102724156|NR_135137.1	-	88066434,88077382,88077722	88066781,88077483,88077900	0.933333
prostate_gland_male_adult_37_years	chr21	42021995	42022030	42022029	+	High_confidence	12	12	39	3.556734	3.994666	chr21	42022002	42022069	LTR|ERVL|MER54A	-	chr21	42022022	42024866	ZNF295-AS1|ENST00000455701.1	+	42022022,42024305	42022211,42024866	1.000000
prostate_gland_male_adult_37_years	chr1	15565208	15565209	15565208	+	RAMPAGE_only	15	15	16	1.459173	2.872906	chr1	15565213	15565311	LINE|L2|L2b	+	chr1	15559607	15592379	DNAJC16|ENST00000483270.1	+	15559607,15560130,15562141,15563928,15564282,15565181,15565918,15566081,15567098,15567777,15568776,15574759,15575334,15592258	15559656,15560329,15562325,15564111,15564359,15565453,15565999,15566410,15567269,15568235,15568971,15575149,15575472,15592379	0.562500
prostate_gland_male_adult_37_years	chr12	124355432	124355464	124355463	-	RAMPAGE_only	2	3	8	0.729587	2.521641	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124324415	124422554	NCOR2|ENST00000356219.7	-	124324415,124326190,124327408,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124398118,124400500,124402403,124419956,124422500	124325583,124326370,124327633,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362297,124363799,124372610,124374463,124378384,124385887,124398181,124400673,124402561,124420055,124422554	0.875000
prostate_gland_male_adult_37_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	7	7	7	0.638388	2.807355	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
prostate_gland_male_adult_37_years	chr7	77534308	77534352	77534334	-	RAMPAGE_only	3	3	15	1.367975	2.950212	chr7	77532903	77534787	Retroposon|SVA|SVA_D	-	chr7	77515153	77515362	STRG.58107.1	-	77515153	77515362	0.600000
prostate_gland_male_adult_37_years	chr6	10481968	10481969	10481968	-	High_confidence	42	42	46	4.195122	4.635235	chr6	10481698	10483280	LTR|ERV1|LTR12C	-	chr6	10481260	10481940	STRG.47832.1	-	10481260	10481940	0.630435
prostate_gland_male_adult_37_years	chr10	19768155	19768196	19768195	+	RAMPAGE_only	5	5	30	2.735949	3.478671	chr10	19768143	19768495	LTR|ERV1|LTR23	+	chr10	19816238	20289856	PLXDC2|ENST00000377252.4	+	19816238,20001774,20046868,20068169,20143294,20147783,20164467,20176998,20177327,20211668,20217425,20219063,20245344,20279702	19817191,20001986,20047015,20068239,20143417,20147902,20164567,20177094,20177409,20211729,20217576,20219102,20245505,20289856	0.833333
prostate_gland_male_adult_37_years	chr19	53444998	53445039	53445016	+	High_confidence	3	4	13	1.185578	3.026987	chr19	53444967	53445144	SINE|Alu|AluSp	-	chr19	53445000	53458261	ZNF761|NM_001289952.1	+	53445000,53446226,53447195,53449511,53454649	53445123,53446337,53447283,53449638,53458261	0.692308
prostate_gland_male_adult_37_years	chr8	107336556	107336581	107336580	-	High_confidence	5	5	15	1.367975	3.106891	chr8	107336384	107336688	SINE|Alu|AluY	+	chr8	107251511	107336522	ANGPT1|ENST00000520734.5	-	107251511,107264220,107284681,107293935,107303239,107321895,107336149,107336383	107252015,107264351,107284848,107294037,107303367,107322128,107336271,107336522	1.000000
prostate_gland_male_adult_37_years	chr12	126737024	126737051	126737024	+	High_confidence	11	11	26	2.371156	3.657268	chr12	126736798	126737145	LTR|ERVL-MaLR|MLT1K	-	chr12	126737006	126746256	LINC00943|NR_038256.1	+	126737006,126742739,126744769,126745005	126737156,126743480,126744888,126746256	0.576923
prostate_gland_male_adult_37_years	chr2	233775648	233775675	233775648	+	High_confidence	5	5	19	1.732768	3.392147	chr2	233775484	233775739	LTR|ERVL-MaLR|MLT1O	-	chr2	233775678	233833423	MROH2A|NM_001287395.1	+	233775678,233779344,233779670,233789496,233789851,233792795,233793672,233794362,233795617,233795966,233796199,233798773,233799779,233800204,233802167,233803447,233804050,233804494,233805003,233807422,233807732,233809125,233810793,233811879,233813669,233814581,233816780,233818001,233818651,233819316,233819901,233822123,233822362,233822880,233823555,233828629,233828889,233829619,233831408,233832176,233832578,233833137	233775757,233779452,233779852,233789628,233790014,233792894,233793824,233794480,233795745,233796045,233796313,233798850,233799899,233800315,233802315,233803488,233804192,233804547,233805111,233807542,233807855,233809278,233810916,233811959,233813778,233814677,233816885,233818125,233818770,233819469,233820056,233822283,233822571,233823018,233823682,233828779,233829072,233829775,233831540,233832279,233832644,233833423	0.894737
prostate_gland_male_adult_37_years	chr5	176221337	176221338	176221337	-	High_confidence	308	310	344	31.372220	4.376991	chr5	176220923	176222588	LTR|ERV1|LTR12C	-	chr5	176203351	176221412	STRG.46688.10	-	176203351,176220906	176204927,176221412	0.956395
prostate_gland_male_adult_37_years	chr4	188796632	188796633	188796632	-	High_confidence	8	9	12	1.094380	2.845351	chr4	188796449	188796590	SINE|MIR|MIR	-	chr4	188777678	188796633	AC093909.4|ENST00000514297.2	-	188777678,188791071,188795235	188778051,188791291,188796633	0.916667
prostate_gland_male_adult_37_years	chr6	3720073	3720077	3720076	-	High_confidence	1501	1526	2441	222.615084	5.588315	chr6	3719558	3721329	LTR|ERV1|LTR12C	-	chr6	3589934	3720099	STRG.47400.1	-	3589934,3594280,3595566,3719362	3589951,3594535,3595661,3720099	0.982794
prostate_gland_male_adult_37_years	chr14	96252549	96252614	96252613	+	High_confidence	9	9	32	2.918346	3.587599	chr14	96252569	96252673	LINE|L2|L2a	-	chr14	96252617	96253232	STRG.100792.1	+	96252617	96253232	0.937500
prostate_gland_male_adult_37_years	chr11	64807612	64807651	64807612	-	RAMPAGE_only	8	8	19	1.732768	3.503258	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64804374	64806368	MEN1|ENST00000478548.1	-	64804374,64805033,64805634	64804816,64805198,64806368	0.684211
prostate_gland_male_adult_37_years	chr4	158201467	158201490	158201468	-	RAMPAGE_only	6	11	23	2.097561	3.501398	chr4	158201406	158201936	LTR|ERVL-MaLR|MLT1F	+	chr4	158199104	158200442	AC098679.1|ENST00000513067.1	-	158199104,158200323	158199350,158200442	0.956522
prostate_gland_male_adult_37_years	chr5	1380069	1380070	1380069	-	High_confidence	125	125	159	14.500532	4.969280	chr5	1379679	1380686	LTR|ERV1|LTR12D	-	chr5	1363581	1380067	LINC01511|ENST00000504989.1	-	1363581,1379561	1364691,1380067	0.993711
prostate_gland_male_adult_37_years	chr5	132556785	132556815	132556785	-	RAMPAGE_only	6	6	18	1.641570	3.281036	chr5	132556530	132556749	DNA|hAT-Charlie|Charlie1	-	chr5	132541443	132543522	IL5|NM_000879.2	-	132541443,132542014,132543093,132543334	132541909,132542143,132543126,132543522	1.000000
prostate_gland_male_adult_37_years	chr3	129424155	129424181	129424155	-	High_confidence	7	7	36	3.283139	4.114718	chr3	129423768	129424204	LINE|L2|L2c	+	chr3	129403996	129424170	STRG.29820.1	-	129403996,129408644,129411157,129415244,129418253,129421366,129424058	129404403,129408858,129411354,129415401,129418448,129421803,129424170	0.972222
prostate_gland_male_adult_37_years	chr18	7946878	7946898	7946878	+	High_confidence	34	34	83	7.569460	4.980429	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.879518
prostate_gland_male_adult_37_years	chr15	45513703	45513713	45513712	+	RAMPAGE_only	19	19	39	3.556734	3.915553	chr15	45513473	45513967	LINE|L1|L1M4	+	chr15	45511152	45519664	HMGN2P46|ENST00000495658.2	+	45511152,45512372,45513697,45515768,45519262	45511205,45512449,45513963,45515892,45519664	0.641026
prostate_gland_male_adult_37_years	chr15	34588450	34588453	34588452	-	RAMPAGE_only	20	33	36	3.283139	3.992871	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34379067	34437466	GOLGA8A|NR_027409.1	-	34379067,34381700,34381967,34382150,34382385,34382796,34383440,34383745,34383960,34385047,34385253,34385426,34385739,34386624,34389643,34391122,34398633,34399154,34400711,34404916,34406673,34407523,34435382,34437397	34381613,34381856,34382068,34382251,34382529,34383053,34383528,34383853,34384047,34385157,34385338,34385474,34385778,34387952,34389768,34391426,34398729,34399203,34400759,34405055,34406870,34407735,34435471,34437466	0.527778
prostate_gland_male_adult_37_years	chr10	61867932	61867953	61867932	-	RAMPAGE_only	3	3	11	1.003181	2.663533	chr10	61867461	61869125	LTR|ERV1|LTR12C	+	chr10	61715534	61716018	STRG.76460.1	-	61715534	61716018	0.545455
prostate_gland_male_adult_37_years	chr5	106205653	106205654	106205653	-	High_confidence	46	46	54	4.924709	4.786896	chr5	106205339	106206597	LTR|ERV1|LTR12C	-	chr5	106205215	106205637	STRG.43961.1	-	106205215	106205637	0.740741
prostate_gland_male_adult_37_years	chr6	3716587	3716623	3716611	-	High_confidence	3	3	10	0.911983	2.646439	chr6	3716408	3716680	SINE|Alu|AluJr	+	chr6	3705257	3717207	STRG.47400.4	-	3705257,3713713,3716538	3710915,3713987,3717207	0.800000
prostate_gland_male_adult_37_years	chr12	53388667	53388693	53388687	+	RAMPAGE_only	8	8	30	2.735949	4.031402	chr12	53388697	53388988	SINE|Alu|AluJb	+	chr12	53380643	53416446	SP1|NM_003109.1	+	53380643,53381658,53382109,53406584,53409361,53410926	53380684,53381813,53383622,53406753,53409561,53416446	0.933333
prostate_gland_male_adult_37_years	chrX	7147287	7147311	7147287	+	High_confidence	30	30	48	4.377519	4.256328	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147288	7354641	STRG.131529.2	+	7147288,7190883,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147606,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354641	0.937500
prostate_gland_male_adult_37_years	chr5	109383446	109383460	109383446	-	High_confidence	4	4	10	0.911983	2.725481	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.900000
prostate_gland_male_adult_37_years	chr9	99023424	99023425	99023424	+	RAMPAGE_only	7	7	11	1.003181	2.646439	chr9	99023460	99023631	LINE|L1|L1MC5	+	chr9	98943712	99070792	COL15A1|NM_001855.4	+	98943712,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.909091
prostate_gland_male_adult_37_years	chr4	79663734	79663762	79663754	+	High_confidence	3	3	11	1.003181	2.663533	chr4	79663745	79663900	LTR|ERVL|LTR33B	+	chr4	79663760	79696837	LINC02469|ENST00000506460.1	+	79663760,79667988,79689987,79696412	79663848,79668127,79690076,79696837	0.545455
prostate_gland_male_adult_37_years	chr7	92142954	92142955	92142954	-	High_confidence	43	43	45	4.103924	4.739991	chr7	92142542	92143888	LTR|ERV1|LTR12C	-	chr7	92131806	92142952	AC000120.2|ENST00000435873.1	-	92131806,92142462	92131872,92142952	0.866667
prostate_gland_male_adult_37_years	chr12	119179224	119179244	119179243	+	High_confidence	7	7	21	1.915165	3.041626	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	1.000000
prostate_gland_male_adult_37_years	chr22	39874066	39874067	39874066	-	RAMPAGE_only	115	119	154	14.044540	4.439751	chr22	39873891	39874245	LTR|ERVL-MaLR|THE1B	-	chr22	39743043	39893790	ENTHD1|NM_152512.3	-	39743043,39765222,39820992,39835839,39861764,39887399,39893694	39744283,39765609,39821113,39835958,39862007,39887903,39893790	0.798701
prostate_gland_male_adult_37_years	chr10	28795970	28796007	28796006	-	High_confidence	7	14	22	2.006363	3.689704	chr10	28795966	28796239	LTR|ERVL-MaLR|MLT1J1	-	chr10	28789187	28796006	LINC00837|ENST00000443246.2	-	28789187,28795772	28792944,28796006	0.681818
prostate_gland_male_adult_37_years	chr3	187021850	187021852	187021851	+	High_confidence	5	9	11	1.003181	2.845351	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.909091
prostate_gland_male_adult_37_years	chr21	25779130	25779131	25779130	+	High_confidence	40	40	48	4.377519	4.178609	chr21	25778185	25779539	LTR|ERV1|LTR12C	+	chr21	25779145	25780427	STRG.127309.1	+	25779145	25780427	0.958333
prostate_gland_male_adult_37_years	chr20	18794077	18794086	18794077	+	High_confidence	42	43	86	7.843055	4.137171	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.976744
prostate_gland_male_adult_37_years	chr3	149284778	149284779	149284778	+	High_confidence	39	39	42	3.830329	4.072987	chr3	149283837	149285090	LTR|ERV1|LTR12C	+	chr3	149284781	149333653	AC093001.1|ENST00000489011.1	+	149284781,149333503	149285182,149333653	0.738095
prostate_gland_male_adult_37_years	chr10	29465065	29465082	29465065	-	High_confidence	4	5	11	1.003181	2.594907	chr10	29465050	29465291	LTR|ERVL-MaLR|MLT1J	+	chr10	29458058	29464793	STRG.75292.9	-	29458058,29458433,29462276,29463491,29464497	29458333,29458589,29462401,29463635,29464793	0.636364
prostate_gland_male_adult_37_years	chr1	21260368	21260402	21260401	-	RAMPAGE_only	4	4	10	0.911983	2.721928	chr1	21260391	21260603	SINE|MIR|MIRb	+	chr1	21238148	21256717	ECE1|ENST00000528294.1	-	21238148,21244988,21247220,21255946,21256687	21238244,21245103,21247363,21256138,21256717	0.500000
prostate_gland_male_adult_37_years	chr12	64293377	64293380	64293377	-	High_confidence	6	6	12	1.094380	2.732159	chr12	64287349	64293377	LINE|L1|L1PA2	-	chr12	64266982	64293383	C12orf56|ENST00000536975.5	-	64266982,64270535,64274900,64275297,64277679,64284663,64285953,64293280	64267288,64270714,64274975,64275372,64277803,64284753,64286060,64293383	0.916667
prostate_gland_male_adult_37_years	chr8	90606062	90606065	90606062	-	High_confidence	52	52	106	9.667021	4.774235	chr8	90605768	90606660	LTR|ERV1|LTR12D	-	chr8	90592774	90606063	LINC01030|NR_104062.1	-	90592774,90593831,90605767	90593103,90593971,90606063	0.886792
prostate_gland_male_adult_37_years	chrY	12686530	12686573	12686530	+	RAMPAGE_only	20	21	40	3.647933	3.306198	chrY	12685409	12686624	LTR|ERV1|MER4-int	+	chrY	12701230	12860839	USP9Y|ENST00000338981.7	+	12701230,12708633,12709387,12720588,12722107,12725112,12726574,12735611,12735997,12736410,12738156,12739524,12757191,12758505,12760483,12771067,12773582,12775470,12776648,12778018,12778605,12779525,12786202,12786521,12790406,12791498,12793031,12810178,12810671,12811634,12812829,12816123,12818419,12833687,12837910,12839863,12841009,12842239,12843063,12846332,12846932,12847238,12856339,12856632,12857565,12859278	12702055,12708693,12709543,12720737,12722187,12725225,12726793,12735727,12736249,12736549,12738309,12739629,12757398,12758642,12760617,12771155,12773925,12775566,12776860,12778259,12778755,12779646,12786333,12786800,12790532,12791624,12793201,12810287,12810818,12811781,12813052,12816344,12818610,12833861,12838052,12840614,12841133,12842465,12843193,12846518,12847153,12847327,12856496,12856845,12857661,12860839	0.975000
prostate_gland_male_adult_37_years	chr1	194358026	194358028	194358027	-	High_confidence	41	80	90	8.207848	4.716226	chr1	194357642	194358834	LTR|ERV1|LTR12C	-	chr1	194357583	194358012	STRG.8254.1	-	194357583	194358012	0.822222
prostate_gland_male_adult_37_years	chr1	241134893	241134919	241134918	-	RAMPAGE_only	11	13	35	3.191941	4.025920	chr1	241134778	241135144	LTR|ERV1|MER48	+	chr1	240775514	241355776	RGS7|ENST00000348120.6	-	240775514,240800640,240802903,240806139,240811917,240813617,240814715,240816316,240827097,240868586,240868775,240870054,240983078,241098665,241355698	240776213,240800721,240802993,240806326,240812043,240813728,240814777,240816415,240827172,240868668,240868852,240870119,240983129,241098762,241355776	0.514286
prostate_gland_male_adult_37_years	chrX	136421475	136421476	136421475	+	High_confidence	33	33	34	3.100743	4.006071	chrX	136421124	136421903	LTR|ERV1|LTR12	+	chrX	136421483	136421975	STRG.136325.1	+	136421483	136421975	0.617647
prostate_gland_male_adult_37_years	chr3	11604396	11604456	11604455	-	High_confidence	100	102	218	19.881232	5.555948	chr3	11604225	11604413	SINE|MIR|MIR3	-	chr3	11556066	11604581	VGLL4|NM_001284391.1	-	11556066,11559331,11564796,11601832,11604323	11558827,11559455,11565019,11602022,11604581	0.986239
prostate_gland_male_adult_37_years	chr21	41480707	41480737	41480736	-	RAMPAGE_only	14	14	38	3.465536	4.260828	chr21	41480630	41480937	SINE|Alu|AluSx1	-	chr21	41466008	41507982	TMPRSS2|ENST00000458356.5	-	41466008,41467733,41468395,41470647,41471805,41473324,41476576,41479171,41480475,41488393,41489506,41494355,41498118,41507949	41466153,41467886,41468538,41470743,41471981,41473496,41476620,41479282,41480602,41488513,41489593,41494578,41498189,41507982	0.736842
prostate_gland_male_adult_37_years	chr12	119179286	119179341	119179296	+	High_confidence	10	10	28	2.553553	3.320659	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.928571
prostate_gland_male_adult_37_years	chr12	109228770	109228793	109228792	+	RAMPAGE_only	4	4	9	0.820785	2.725481	chr12	109228779	109228852	SINE|MIR|MIRb	+	chr12	109232668	109266555	ACACB|ENST00000538526.5	+	109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064,109260479,109262356,109264231,109265109,109265388,109266235	109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260149,109260657,109262469,109264386,109265280,109265525,109266555	1.000000
prostate_gland_male_adult_37_years	chr17	4656060	4656062	4656061	-	High_confidence	17	26	26	2.371156	3.632192	chr17	4655641	4657054	LTR|ERV1|LTR12C	-	chr17	4642221	4656100	STRG.111782.1	-	4642221,4654143,4655673	4642286,4654258,4656100	0.961538
prostate_gland_male_adult_37_years	chr1	212792448	212792473	212792470	-	High_confidence	4	4	14	1.276776	2.753434	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.714286
prostate_gland_male_adult_37_years	chr16	29963560	29963579	29963560	+	High_confidence	2	3	6	0.547190	2.584963	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.833333
prostate_gland_male_adult_37_years	chr9	92536649	92536652	92536651	-	High_confidence	4	6	9	0.820785	2.500000	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.888889
prostate_gland_male_adult_37_years	chr15	51077707	51077712	51077707	-	RAMPAGE_only	6	6	10	0.911983	2.725481	chr15	51077571	51078015	LTR|ERV1|MER61B	+	chr15	51056676	51094501	TNFAIP8L3|ENST00000649177.1	-	51056676,51094410	51058443,51094501	0.600000
prostate_gland_male_adult_37_years	chr4	86453373	86453399	86453386	-	High_confidence	9	9	26	2.371156	3.700440	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015268	86453387	MAPK10|ENST00000641657.1	-	86015268,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453387	1.000000
prostate_gland_male_adult_37_years	chr3	39407676	39407683	39407682	+	High_confidence	9	10	17	1.550371	3.327820	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.941176
prostate_gland_male_adult_37_years	chr9	119869757	119869758	119869757	-	High_confidence	114	115	119	10.852599	4.546083	chr9	119869342	119870847	LTR|ERV1|LTR12C	-	chr9	119868545	119870084	STRG.72989.2	-	119868545	119870084	0.957983
prostate_gland_male_adult_37_years	chr2	218287279	218287306	218287279	-	High_confidence	37	38	81	7.387063	4.852576	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.864198
prostate_gland_male_adult_37_years	chrX	53585017	53585028	53585017	-	RAMPAGE_only	6	6	13	1.185578	3.026987	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.923077
prostate_gland_male_adult_37_years	chrX	107245044	107245100	107245099	-	High_confidence	28	38	186	16.962886	5.141495	chrX	107244866	107245402	DNA|MULE-MuDR|Ricksha_c	-	chrX	107122920	107245130	STRG.135011.1	-	107122920,107147742,107153171,107153453,107154095,107167648,107175088,107244958	107124332,107147809,107153306,107153503,107154246,107167784,107175193,107245130	0.951613
prostate_gland_male_adult_37_years	chr11	57793995	57794022	57793995	+	RAMPAGE_only	12	13	36	3.283139	4.027719	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.944444
prostate_gland_male_adult_37_years	chr12	93566778	93566786	93566785	-	RAMPAGE_only	5	5	10	0.911983	3.121928	chr12	93566728	93566892	LTR|ERVL-MaLR|MLT1K	-	chr12	93542463	93571756	STRG.90908.3	-	93542463,93545070,93565612,93567063,93570817	93543305,93545358,93566970,93567159,93571756	0.900000
prostate_gland_male_adult_37_years	chr13	43078349	43078354	43078349	+	RAMPAGE_only	14	22	30	2.735949	3.689902	chr13	43078274	43078372	SINE|MIR|MIR3	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.966667
prostate_gland_male_adult_37_years	chr22	23544163	23544164	23544163	+	High_confidence	7	7	9	0.820785	2.503258	chr22	23538729	23546008	LTR|ERVK|HERVK-int	+	chr22	23543862	23547797	PCAT14|ENST00000627127.1	+	23543862	23547797	1.000000
prostate_gland_male_adult_37_years	chr8	9188998	9189021	9188998	+	High_confidence	21	21	58	5.289502	4.881616	chr8	9188663	9189149	LTR|ERV1|MER50B	+	chr8	9188998	9202858	AC022784.1|ENST00000648105.1	+	9188998,9189347,9198923,9202391	9189046,9189597,9198991,9202858	0.948276
prostate_gland_male_adult_37_years	chr2	131557288	131557334	131557333	+	RAMPAGE_only	33	36	60	5.471899	4.793849	chr2	131556954	131557921	LINE|L1|L1MA6	-	chr2	131555006	131568797	STRG.16870.9	+	131555006,131557350,131564860	131555184,131557463,131568797	0.900000
prostate_gland_male_adult_37_years	chr5	29143504	29143542	29143541	+	High_confidence	5	5	12	1.094380	2.918296	chr5	29143203	29143988	LTR|ERVL|MER21C	+	chr5	29143511	29153485	LINC02109|ENST00000602801.1	+	29143511,29145747,29146270,29153458	29143729,29145874,29146461,29153485	0.833333
prostate_gland_male_adult_37_years	chr11	77571158	77571206	77571158	+	High_confidence	8	8	29	2.644751	3.481662	chr11	77570921	77571455	LTR|ERV1|LTR61	+	chr11	77571175	77575965	STRG.83833.1	+	77571175,77574210	77571685,77575965	0.965517
prostate_gland_male_adult_37_years	chr12	54744078	54744097	54744089	+	RAMPAGE_only	3	3	10	0.911983	2.721928	chr12	54738358	54744493	LINE|L1|L1PB1	-	chr12	54830518	54858260	MUCL1|ENST00000547990.1	+	54830518,54855115,54856769,54858192	54830875,54855157,54856892,54858260	0.600000
prostate_gland_male_adult_37_years	chr19	21440662	21440671	21440669	-	High_confidence	4	6	14	1.276776	3.026987	chr19	21440180	21440667	LTR|ERV1|HERV3-int	-	chr19	21433711	21440790	STRG.120957.1	-	21433711,21440414	21433978,21440790	0.928571
prostate_gland_male_adult_37_years	chr5	146050065	146050070	146050065	+	High_confidence	7	7	17	1.550371	2.983459	chr5	146050103	146050226	LINE|CR1|Plat_L3	+	chr5	146050063	146062781	SH3RF2|ENST00000503848.5	+	146050063,146055980,146062425	146050127,146056231,146062781	0.705882
prostate_gland_male_adult_37_years	chr19	51354753	51354789	51354778	-	High_confidence	9	12	23	2.097561	2.828781	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.956522
prostate_gland_male_adult_37_years	chr15	23962740	23962741	23962740	+	RAMPAGE_only	8	8	9	0.820785	2.750000	chr15	23962441	23962990	LTR|ERV1|LTR12F	+	chr15	23824721	23979235	STRG.101494.1	+	23824721,23941696,23973536,23976146,23979070	23824790,23941829,23975255,23976243,23979235	0.666667
prostate_gland_male_adult_37_years	chr22	49925451	49925454	49925453	+	RAMPAGE_only	10	18	26	2.371156	3.083551	chr22	49925493	49925572	LINE|CR1|L3b	+	chr22	49923209	49927528	CRELD2|ENST00000487969.1	+	49923209,49927254	49925557,49927528	1.000000
prostate_gland_male_adult_37_years	chr7	90154169	90154185	90154183	+	High_confidence	4	6	11	1.003181	2.721928	chr7	90154032	90154206	DNA|hAT-Charlie|MER5A	+	chr7	90154374	90164827	STEAP1|ENST00000297205.6	+	90154374,90159757,90160804,90161913,90164476	90154543,90159872,90161317,90162078,90164827	0.909091
prostate_gland_male_adult_37_years	chr13	77475823	77475880	77475823	+	RAMPAGE_only	11	11	31	2.827148	4.123231	chr13	77474476	77476020	LTR|ERV1|LTR12C	-	chr13	77535673	77645263	SCEL|NM_144777.2	+	77535673,77555856,77556595,77559803,77563830,77567679,77568294,77569370,77572123,77589143,77591394,77593513,77597544,77599328,77599688,77602064,77602653,77603075,77604355,77608055,77609057,77610046,77612890,77613892,77617598,77617802,77618003,77627946,77634378,77637119,77640675,77642705,77644257	77535824,77555918,77556713,77559863,77563899,77567748,77568333,77569451,77572189,77589224,77591460,77593573,77597589,77599388,77599748,77602124,77602713,77603135,77604415,77608115,77609117,77610106,77612941,77613955,77617658,77617862,77618060,77628009,77634450,77637194,77640784,77642808,77645263	0.838710
prostate_gland_male_adult_37_years	chr22	36481305	36481337	36481336	-	High_confidence	5	8	21	1.915165	3.003702	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.523810
prostate_gland_male_adult_37_years	chr11	58578102	58578133	58578102	-	High_confidence	8	9	58	5.289502	4.667713	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.810345
prostate_gland_male_adult_37_years	chr15	74053445	74053446	74053445	+	High_confidence	45	48	64	5.836692	4.495254	chr15	74052365	74053880	LTR|ERV1|LTR12C	+	chr15	74053468	74054033	STRG.105330.1	+	74053468	74054033	0.953125
prostate_gland_male_adult_37_years	chr21	29077486	29077501	29077486	+	High_confidence	15	15	31	2.827148	3.514409	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.580645
prostate_gland_male_adult_37_years	chr7	21851131	21851198	21851168	+	High_confidence	11	13	68	6.201485	4.538930	chr7	21851065	21851438	LTR|ERVL-MaLR|THE1C	+	chr7	21851161	21884410	STRG.55578.1	+	21851161,21852466,21854314,21861852,21864534,21866469,21867858,21868863,21873273,21880701,21884290	21851320,21852631,21854455,21862023,21864657,21866663,21868007,21868991,21873501,21880893,21884410	0.970588
prostate_gland_male_adult_37_years	chr9	111783948	111783964	111783959	-	High_confidence	97	99	316	28.818667	5.832945	chr9	111783697	111784151	LTR|ERVL|MER70A	-	chr9	111722075	111783968	STRG.72606.3	-	111722075,111723791,111727632,111738279,111741475,111746233,111748091,111756324,111758083,111758694,111775790,111780929,111783798	111722585,111723911,111728049,111738522,111741570,111746342,111748199,111756478,111758195,111758848,111775975,111781017,111783968	0.939873
prostate_gland_male_adult_37_years	chr9	84409496	84409497	84409496	+	High_confidence	15	15	15	1.367975	3.640224	chr9	84408306	84409815	LTR|ERV1|LTR12C	+	chr9	84409484	84412197	STRG.71078.1	+	84409484,84412081	84409840,84412197	0.666667
prostate_gland_male_adult_37_years	chr6	140898419	140898430	140898419	-	RAMPAGE_only	6	6	28	2.553553	3.699514	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140852924	AL035446.1|ENST00000455011.1	-	140845957,140852818	140846304,140852924	0.678571
prostate_gland_male_adult_37_years	chr1	73306174	73306184	73306174	+	High_confidence	6	6	14	1.276776	3.180833	chr1	73306074	73306568	LTR|ERVL|LTR53	-	chr1	73306228	73348312	LINC01360|ENST00000444827.5	+	73306228,73310852,73348133	73306274,73310990,73348312	0.571429
prostate_gland_male_adult_37_years	chr9	129489079	129489126	129489125	+	High_confidence	6	6	18	1.641570	3.572431	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.777778
prostate_gland_male_adult_37_years	chr1	179727773	179727777	179727776	+	RAMPAGE_only	12	12	21	1.915165	3.558519	chr1	179727227	179727791	LINE|L2|L2a	-	chr1	179730216	179742697	AL359853.3|ENST00000423879.5	+	179730216,179742354	179730417,179742697	0.714286
prostate_gland_male_adult_37_years	chr13	50397418	50397419	50397418	+	High_confidence	27	27	27	2.462354	3.482127	chr13	50396411	50397833	LTR|ERV1|LTR12C	+	chr13	50397418	50654079	DLEU1|ENST00000647700.1	+	50397418,50415088,50425577,50433412,50648592,50653710	50397896,50415202,50425729,50433550,50648643,50654079	1.000000
prostate_gland_male_adult_37_years	chr4	4348152	4348173	4348172	+	High_confidence	8	8	17	1.550371	3.051602	chr4	4348118	4348397	SINE|Alu|AluSg	-	chr4	4348139	4419058	NSG1|ENST00000421177.6	+	4348139,4380982,4385059,4385472,4385856,4387603,4391474,4409572,4417234	4348471,4381073,4385201,4385555,4387173,4387758,4391591,4409683,4419058	0.882353
prostate_gland_male_adult_37_years	chr11	93499283	93499313	93499289	-	High_confidence	35	35	86	7.843055	4.039937	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	0.965116
prostate_gland_male_adult_37_years	chr11	57793743	57793786	57793743	+	RAMPAGE_only	9	9	38	3.465536	3.928481	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57781602	57796584	CTNND1|ENST00000530068.5	+	57781602,57791491,57794009,57795576,57796456	57781646,57791673,57794081,57795729,57796584	0.763158
prostate_gland_male_adult_37_years	chr1	25820202	25820203	25820202	+	High_confidence	4	4	7	0.638388	2.807355	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.857143
prostate_gland_male_adult_37_years	chr6	26482516	26482540	26482516	-	High_confidence	5	6	15	1.367975	2.692381	chr6	26482449	26482577	DNA|hAT-Charlie|Charlie1	+	chr6	26471943	26482509	LOC285819|NR_038992.1	-	26471943,26476151,26477834,26482471	26472193,26477481,26479120,26482509	0.933333
prostate_gland_male_adult_37_years	chr1	183449446	183449482	183449446	+	High_confidence	5	5	14	1.276776	2.692381	chr1	183449284	183449643	LTR|ERVL-MaLR|THE1B	+	chr1	183449542	183463242	STRG.7953.2	+	183449542,183457450,183462042	183449563,183457530,183463242	0.642857
prostate_gland_male_adult_37_years	chr1	47004182	47004183	47004182	+	High_confidence	11	11	14	1.276776	2.661226	chr1	47003946	47004346	LTR|ERV1|MER51B	+	chr1	47004239	47050754	CYP4X1|NM_001320290.1	+	47004239,47029989,47031435,47033240,47035805,47036016,47038659,47039341,47046466,47048564,47049421,47049999	47004369,47030131,47031480,47033368,47035933,47036171,47038766,47039532,47046600,47048629,47049504,47050754	0.714286
prostate_gland_male_adult_37_years	chr12	52116407	52116422	52116421	-	RAMPAGE_only	32	35	75	6.839874	3.740196	chr12	52116006	52118404	LTR|ERV1|HERVE-int	-	chr12	52089218	52118551	STRG.89187.7	-	52089218,52104158,52106333	52094852,52106001,52118551	0.960000
prostate_gland_male_adult_37_years	chr16	67183549	67183579	67183549	-	High_confidence	6	6	16	1.459173	3.106891	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67176770	67183586	KIAA0895L|ENST00000563831.2	-	67176770,67178198,67183261	67176975,67178504,67183586	0.562500
prostate_gland_male_adult_37_years	chr17	49646471	49646496	49646495	-	High_confidence	5	5	22	2.006363	3.140361	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.954545
prostate_gland_male_adult_37_years	chr9	89479889	89479890	89479889	-	High_confidence	222	227	245	22.343587	4.739402	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89362238	89479890	SEMA4D|ENST00000537934.5	-	89362238,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89418362,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89418437,89455953,89479890	0.967347
prostate_gland_male_adult_37_years	chr22	19950958	19950990	19950958	+	High_confidence	10	10	62	5.654295	5.113126	chr22	19950523	19951077	LTR|ERV1|MER31-int	-	chr22	19950941	19968589	COMT|ENST00000412786.5	+	19950941,19961198,19962526,19963565,19964167,19968535	19951052,19961289,19962815,19963759,19964299,19968589	0.903226
prostate_gland_male_adult_37_years	chr10	65570515	65570522	65570521	+	High_confidence	14	15	33	3.009544	4.265320	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570874	65615757	LINC01515|ENST00000593568.1	+	65570874,65572934,65585484,65615635	65571579,65573056,65585567,65615757	0.515152
prostate_gland_male_adult_37_years	chr16	15798662	15798686	15798664	-	RAMPAGE_only	100	190	287	26.173916	6.273336	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.923345
prostate_gland_male_adult_37_years	chr3	49747924	49747953	49747952	-	High_confidence	4	4	9	0.820785	2.503258	chr3	49747932	49747982	DNA|hAT-Tip100|MamTip2	+	chr3	49738271	49748928	IP6K1|ENST00000479464.1	-	49738271,49747817,49748868	49738422,49748168,49748928	0.777778
prostate_gland_male_adult_37_years	chr2	86482561	86482578	86482577	+	RAMPAGE_only	4	4	10	0.911983	2.721928	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.700000
prostate_gland_male_adult_37_years	chr19	44562832	44562833	44562832	-	High_confidence	121	152	173	15.777308	5.360594	chr19	44562417	44563770	LTR|ERV1|LTR12C	-	chr19	44562422	44562896	STRG.122605.2	-	44562422	44562896	0.959538
prostate_gland_male_adult_37_years	chr8	83403738	83403739	83403738	+	High_confidence	12	12	12	1.094380	2.584963	chr8	83402757	83404051	LTR|ERV1|LTR12C	+	chr8	83403757	83408900	LINC01419|NR_122034.1	+	83403757,83407691	83404069,83408900	1.000000
prostate_gland_male_adult_37_years	chr5	997318	997328	997327	-	High_confidence	5	5	14	1.276776	3.026987	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987176	997340	LOC100506688|NR_104614.1	-	987176,997270	990623,997340	0.928571
prostate_gland_male_adult_37_years	chr4	90649489	90649508	90649507	+	High_confidence	9	9	20	1.823966	3.681881	chr4	90649330	90649700	LTR|ERVL-MaLR|MLT1A	+	chr4	90649507	90780771	CCSER1|ENST00000504150.1	+	90649507,90723913,90727203,90780441	90649624,90723991,90727297,90780771	0.550000
prostate_gland_male_adult_37_years	chr6	79631441	79631442	79631441	+	High_confidence	14	14	19	1.732768	3.155565	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
prostate_gland_male_adult_37_years	chr5	180830987	180831032	180831009	+	High_confidence	18	19	117	10.670203	5.426207	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.974359
prostate_gland_male_adult_37_years	chr11	97667878	97667879	97667878	+	High_confidence	33	33	35	3.191941	4.043802	chr11	97666908	97668296	LTR|ERV1|LTR12C	+	chr11	97667897	97668321	STRG.84844.1	+	97667897	97668321	0.742857
prostate_gland_male_adult_37_years	chr14	29666076	29666095	29666076	-	High_confidence	4	4	11	1.003181	2.845351	chr14	29665934	29666040	LINE|L1|L1PB3	-	chr14	29638295	29666158	PRKD1|ENST00000468370.5	-	29638295,29638693,29656475,29663698,29666076	29638566,29638904,29656499,29663859,29666158	1.000000
prostate_gland_male_adult_37_years	chr2	113704173	113704174	113704173	-	High_confidence	19	20	20	1.823966	3.391893	chr2	113703868	113704969	LTR|ERV1|LTR12E	-	chr2	113677757	113704259	STRG.16165.1	-	113677757,113703696	113677783,113704259	0.850000
prostate_gland_male_adult_37_years	chr5	124893245	124893248	124893247	+	High_confidence	17	28	28	2.553553	3.628085	chr5	124892257	124893560	LTR|ERV1|LTR12C	+	chr5	124893359	124980772	LINC02240|ENST00000642446.1	+	124893359,124919946,124921570,124950963,124951283,124980203	124893563,124920122,124921726,124951191,124951426,124980772	0.714286
prostate_gland_male_adult_37_years	chr7	37492580	37492581	37492580	+	High_confidence	34	35	45	4.103924	4.398091	chr7	37491930	37492896	LTR|ERV1|LTR12D	+	chr7	37492538	37526801	STRG.56446.1	+	37492538,37526774	37493041,37526801	0.866667
prostate_gland_male_adult_37_years	chr4	28117487	28117510	28117509	+	High_confidence	8	8	14	1.276776	3.182006	chr4	28116374	28117705	LTR|ERV1|LTR12C	-	chr4	28117593	28215348	STRG.34752.1	+	28117593,28215068	28117716,28215348	0.785714
prostate_gland_male_adult_37_years	chr9	110321341	110321342	110321341	+	RAMPAGE_only	5	5	8	0.729587	2.500000	chr9	110321245	110321504	LINE|RTE-X|L4_C_Mam	-	chr9	110406414	110407633	STRG.72453.1	+	110406414	110407633	0.500000
prostate_gland_male_adult_37_years	chr5	134611108	134611131	134611114	-	RAMPAGE_only	3	4	10	0.911983	2.646439	chr5	134610883	134611163	SINE|Alu|AluJr4	-	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	1.000000
prostate_gland_male_adult_37_years	chr1	156343608	156343609	156343608	-	RAMPAGE_only	7	7	11	1.003181	2.732159	chr1	156343389	156343676	LTR|ERVL-MaLR|MLT1K	-	chr1	156308967	156338465	CCT3|ENST00000295688.7	-	156308967,156310557,156310949,156312040,156317165,156317414,156318867,156320838,156324971,156333546,156334712,156334867,156335826,156338153	156309303,156310689,156311195,156312221,156317247,156317547,156319017,156321025,156325089,156333643,156334775,156334918,156335888,156338465	1.000000
prostate_gland_male_adult_37_years	chr10	11517459	11517505	11517459	-	RAMPAGE_only	3	3	13	1.185578	2.777363	chr10	11517446	11517546	LINE|L2|L2c	+	chr10	11460509	11532275	USP6NL|ENST00000277575.5	-	11460509,11481769,11484970,11485168,11485816,11489101,11490831,11493118,11501100,11509594,11518534,11525385,11527499,11532177	11463849,11481922,11485070,11485234,11485911,11489222,11490880,11493228,11501208,11509675,11518574,11525468,11527567,11532275	1.000000
prostate_gland_male_adult_37_years	chr7	116181544	116181591	116181546	-	High_confidence	37	50	103	9.393426	3.892578	chr7	116181127	116182476	LTR|ERV1|LTR12C	-	chr7	116120263	116181539	STRG.60311.1	-	116120263,116181078	116120429,116181539	0.970874
prostate_gland_male_adult_37_years	chrX	16712879	16712933	16712889	-	High_confidence	10	10	40	3.647933	4.396439	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.800000
prostate_gland_male_adult_37_years	chr2	150628875	150628894	150628889	+	High_confidence	3	3	10	0.911983	2.725481	chr2	150628643	150628961	DNA|hAT-Tip100|MER45C	-	chr2	150628896	150635357	LOC101929282|NR_110244.1	+	150628896,150629639,150632266,150634635,150635185	150629121,150629714,150632396,150634739,150635357	0.800000
prostate_gland_male_adult_37_years	chr1	242773815	242773816	242773815	-	High_confidence	69	69	71	6.475080	4.294735	chr1	242773406	242774757	LTR|ERV1|LTR12C	-	chr1	242773361	242773806	STRG.10289.1	-	242773361	242773806	0.929577
prostate_gland_male_adult_37_years	chr16	4355592	4355593	4355592	-	High_confidence	88	89	89	8.116650	4.832630	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.921348
prostate_gland_male_adult_37_years	chr3	128859777	128859778	128859777	-	High_confidence	16	17	17	1.550371	3.375000	chr3	128859679	128860156	LTR|ERV1|LTR4	-	chr3	128855770	128860327	STRG.29717.1	-	128855770,128859454	128855914,128860327	0.647059
prostate_gland_male_adult_37_years	chr19	10555125	10555126	10555125	-	RAMPAGE_only	31	31	36	3.283139	3.606913	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	0.944444
prostate_gland_male_adult_37_years	chr2	118143019	118143020	118143019	-	RAMPAGE_only	17	17	23	2.097561	3.463281	chr2	118137000	118143020	LINE|L1|L1PA2	-	chr2	118132127	118186386	THORLNC|ENST00000414886.5	-	118132127,118176764,118183086,118186230	118132372,118176905,118183322,118186386	0.869565
prostate_gland_male_adult_37_years	chr2	190760500	190760501	190760500	-	High_confidence	120	121	136	12.402971	5.502384	chr2	190760093	190761528	LTR|ERV1|LTR12C	-	chr2	190760047	190760582	STRG.20268.1	-	190760047	190760582	0.742647
prostate_gland_male_adult_37_years	chrX	119127811	119127818	119127811	-	High_confidence	564	638	1235	112.629918	7.007956	chrX	119127624	119127833	LINE|L2|L2a	+	chrX	119077618	119127822	STRG.135687.1	-	119077618,119083014,119085382,119086545,119093666,119096493,119104991,119108336,119109075,119116495,119123581,119127726	119081504,119083120,119085546,119089746,119093775,119096691,119105147,119108471,119109202,119116664,119123652,119127822	0.956275
prostate_gland_male_adult_37_years	chr2	8572053	8572057	8572056	-	RAMPAGE_only	5	5	10	0.911983	2.721928	chr2	8572000	8572112	LINE|L2|L2b	+	chr2	8570330	8576955	LINC01814|ENST00000436187.1	-	8570330,8576910	8570581,8576955	0.900000
prostate_gland_male_adult_37_years	chrX	51511155	51511167	51511166	-	High_confidence	6	6	19	1.732768	3.321104	chrX	51510925	51511222	SINE|Alu|AluSq2	+	chrX	51502089	51511005	LINC01496|ENST00000448761.1	-	51502089,51505731,51505880,51510947	51502340,51505793,51505969,51511005	0.631579
prostate_gland_male_adult_37_years	chr10	17386918	17386963	17386935	+	High_confidence	14	16	42	3.830329	4.285011	chr10	17386606	17386994	LTR|ERV1|MER48	-	chr10	17386935	17408286	ST8SIA6-AS1|NR_034129.1	+	17386935,17399104,17407967	17387075,17399202,17408286	0.976190
prostate_gland_male_adult_37_years	chr6	31880543	31880546	31880543	+	RAMPAGE_only	4	4	12	1.094380	3.022055	chr6	31880399	31880568	DNA|hAT-Charlie|MER5A	+	chr6	31877824	31881692	STRG.49281.1	+	31877824,31880243	31878078,31881692	0.750000
prostate_gland_male_adult_37_years	chr2	159382560	159382573	159382572	-	RAMPAGE_only	4	4	10	0.911983	2.646439	chr2	159382314	159382523	SINE|MIR|MIRb	-	chr2	159336959	159400650	STRG.18267.3	-	159336959,159337461,159347485,159348677,159349006,159349707,159373044,159374690,159382558,159383605,159385154,159386352,159389344,159395768,159397073,159397344,159398828,159400598	159337077,159337772,159347646,159348833,159349280,159350357,159373189,159374753,159382802,159383680,159385369,159386607,159389485,159395834,159397100,159397389,159398894,159400650	1.000000
prostate_gland_male_adult_37_years	chr3	69999732	69999733	69999732	+	High_confidence	17	17	23	2.097561	3.468577	chr3	69999500	70000000	LTR|ERV1|LTR1A2	+	chr3	69999732	70015318	SAMMSON|ENST00000483525.2	+	69999732,70012356,70013519,70013793	69999867,70012598,70013672,70015318	0.782609
prostate_gland_male_adult_37_years	chr13	24506413	24506414	24506413	-	High_confidence	183	183	201	18.330861	5.519016	chr13	24506039	24507335	LTR|ERV1|LTR12C	-	chr13	24456396	24506781	STRG.93113.3	-	24456396,24459043,24459263,24459971,24469023,24469893,24475471,24477700,24478092,24484652,24486167,24490667,24492420,24493595,24494572,24498115,24499300,24500315,24501632,24503644,24506032	24456478,24459122,24459310,24460136,24469110,24470025,24475596,24477857,24478276,24484748,24486305,24490828,24492594,24493733,24494722,24498229,24499376,24500382,24501834,24503777,24506781	0.960199
prostate_gland_male_adult_37_years	chr6	110643250	110643255	110643250	-	High_confidence	80	83	189	17.236481	6.308060	chr6	110643223	110643428	LINE|L1|L1ME3F	+	chr6	110609977	110643766	STRG.52379.5	-	110609977,110621103,110622087,110622814,110623289,110626775,110627001,110632029,110638648,110643190	110614666,110621370,110622166,110622912,110623362,110626845,110627145,110632161,110638706,110643766	0.883598
prostate_gland_male_adult_37_years	chr17	52862101	52862102	52862101	+	High_confidence	55	74	78	7.113468	4.975883	chr17	52861817	52862431	LTR|ERV1|LTR12_	+	chr17	52862113	52922235	STRG.114765.1	+	52862113,52917867,52921946	52862471,52917938,52922235	0.717949
prostate_gland_male_adult_37_years	chr4	147718186	147718193	147718186	+	RAMPAGE_only	7	7	12	1.094380	3.188722	chr4	147717960	147718380	LINE|CR1|L3	+	chr4	147732062	148072780	ARHGAP10|ENST00000336498.7	+	147732062,147822726,147822895,147847150,147857552,147864845,147866711,147875020,147879231,147881837,147906637,147909731,147913073,147939824,147946616,147955315,147965023,147966679,148023262,148046891,148063147,148064415,148071992	147732455,147822822,147822957,147847222,147857654,147864956,147866816,147875150,147879338,147881932,147906719,147909777,147913139,147939899,147946704,147955374,147965129,147966839,148023413,148047051,148063300,148064507,148072780	0.916667
prostate_gland_male_adult_37_years	chr7	7566054	7566056	7566054	-	High_confidence	4	8	8	0.729587	2.500000	chr7	7565778	7566082	SINE|Alu|AluSc	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	1.000000
prostate_gland_male_adult_37_years	chr14	34894857	34894888	34894857	-	High_confidence	5	5	11	1.003181	2.845351	chr14	34894826	34895089	SINE|Alu|AluSc8	+	chr14	34752836	34895057	STRG.97597.2	-	34752836,34754826,34758703,34761756,34764706,34765020,34771510,34773571,34774326,34775918,34780185,34783118,34783761,34785776,34786125,34792774,34794748,34795669,34800223,34801093,34802853,34807450,34810934,34826012,34862043,34874491,34894808	34753704,34754914,34758846,34762223,34764933,34765268,34771659,34773726,34774490,34776515,34780310,34783232,34783927,34786001,34786221,34792921,34794887,34795765,34800390,34801193,34802988,34807538,34811036,34826156,34862322,34874662,34895057	1.000000
prostate_gland_male_adult_37_years	chr11	73785298	73785332	73785331	+	RAMPAGE_only	4	4	11	1.003181	2.550341	chr11	73785129	73785574	LINE|L2|L2c	-	chr11	73787315	73864611	MRPL48|ENST00000310614.11	+	73787315,73805026,73808312,73825707,73844806,73859906,73863171,73864295	73787992,73805079,73808350,73825796,73844976,73860009,73863261,73864611	0.545455
prostate_gland_male_adult_37_years	chr15	81331892	81331893	81331892	+	High_confidence	5	5	8	0.729587	2.521641	chr15	81331558	81332203	LTR|ERV1|MER50	+	chr15	81331910	81516976	TMC3-AS1|ENST00000560851.2	+	81331910,81332344,81341561,81358335,81361918,81380208,81516502	81332023,81332541,81341708,81358503,81362036,81380260,81516976	0.875000
prostate_gland_male_adult_37_years	chr13	108886634	108886668	108886634	+	RAMPAGE_only	15	15	30	2.735949	3.469577	chr13	108886377	108886830	LTR|ERV1|MER61D	-	chr13	108793579	109056057	MYO16|ENST00000375857.6	+	108793579,108806678,108820336,108823124,108844342,108855442,108866176,108883058,108888371,108898015,108910002,108957687,108961538,108962423,108964760,108992375,109008896,109019710,109046915,109052299,109055045,109055389	108793640,108806804,108820412,108823278,108844493,108855553,108866242,108883186,108888477,108898133,108910150,108957799,108961656,108962495,108964902,108992448,109009049,109019911,109046991,109052475,109055126,109056057	1.000000
prostate_gland_male_adult_37_years	chr7	73799541	73799542	73799541	+	High_confidence	59	59	61	5.563097	4.824954	chr7	73799195	73799666	LTR|ERV1|MER31A	+	chr7	73799541	73829366	CLDN4|ENST00000466411.1	+	73799541,73827612,73828599,73829201	73799829,73827678,73828673,73829366	0.639344
prostate_gland_male_adult_37_years	chr3	33864090	33864091	33864090	+	High_confidence	12	12	18	1.641570	3.057476	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33863895	33866468	PDCD6IP|ENST00000473593.1	+	33863895,33865242,33866350	33864129,33865430,33866468	0.666667
prostate_gland_male_adult_37_years	chr5	150125450	150125484	150125450	-	RAMPAGE_only	6	6	17	1.550371	2.889549	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.941176
prostate_gland_male_adult_37_years	chr13	32503862	32503880	32503879	-	RAMPAGE_only	6	6	14	1.276776	2.664498	chr13	32503763	32504021	SINE|Alu|AluJr4	+	chr13	32432786	32490140	N4BP2L2|ENST00000503296.6	-	32432786,32436360,32438651,32442387,32477886,32480589,32490091	32432972,32436405,32438737,32444126,32478048,32480637,32490140	1.000000
prostate_gland_male_adult_37_years	chr18	66005291	66005292	66005291	-	High_confidence	38	38	41	3.739131	3.461340	chr18	66004906	66006519	LTR|ERV1|LTR12C	-	chr18	66004663	66005274	STRG.118757.1	-	66004663	66005274	0.902439
prostate_gland_male_adult_37_years	chr6	79631362	79631391	79631362	+	High_confidence	9	9	23	2.097561	3.299896	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.956522
prostate_gland_male_adult_37_years	chr2	156254917	156254963	156254935	-	High_confidence	11	13	32	2.918346	4.413716	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156021750	156254950	LINC01876|ENST00000636956.1	-	156021750,156022671,156024465,156205381,156227966,156254777	156021899,156022817,156024607,156205438,156228004,156254950	0.500000
prostate_gland_male_adult_37_years	chr1	147517874	147517875	147517874	-	High_confidence	159	190	211	19.242844	5.858896	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147382191	147517875	LINC00624|NR_038423.2	-	147382191,147514337,147515520,147517442	147384863,147514448,147515676,147517875	0.895735
prostate_gland_male_adult_37_years	chr2	73072182	73072209	73072208	-	High_confidence	3	3	11	1.003181	2.721928	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.545455
prostate_gland_male_adult_37_years	chr21	44818773	44818789	44818785	-	High_confidence	6	6	26	2.371156	3.833270	chr21	44818658	44818746	SINE|MIR|MIR	-	chr21	44805616	44818779	SUMO3|ENST00000479153.1	-	44805616,44809046,44813975,44818668	44807040,44809118,44814104,44818779	0.961538
prostate_gland_male_adult_37_years	chr6	26122997	26122998	26122997	-	High_confidence	11	11	12	1.094380	2.913977	chr6	26122928	26123343	LTR|ERV1|MER101	-	chr6	26114872	26123910	HIST1H2BC|ENST00000314332.5	-	26114872,26123514	26115135,26123910	0.750000
prostate_gland_male_adult_37_years	chr11	121237353	121237354	121237353	+	High_confidence	37	38	54	4.924709	4.916231	chr11	121236927	121237620	LTR|ERVK|HERVK14-int	+	chr11	121237314	121245709	STRG.85914.1	+	121237314,121244758	121237469,121245709	0.611111
prostate_gland_male_adult_37_years	chr9	76478161	76478162	76478161	+	High_confidence	14	14	16	1.459173	2.682589	chr9	76477878	76478576	LTR|ERV1|LTR12_	+	chr9	76478340	76507416	GCNT1|NM_001097635.1	+	76478340,76500915,76502238	76478530,76501061,76507416	0.500000
prostate_gland_male_adult_37_years	chrX	17069118	17069119	17069118	+	RAMPAGE_only	11	11	13	1.185578	2.873141	chrX	17069063	17069285	SINE|MIR|MIRc	-	chrX	17074512	17147629	REPS2|ENST00000469714.1	+	17074512,17103717,17133823,17135260,17138855,17147412	17074608,17103779,17133907,17135406,17138961,17147629	0.769231
prostate_gland_male_adult_37_years	chr6	2961976	2962005	2961976	-	High_confidence	4	4	15	1.367975	2.610577	chr6	2961899	2962022	SINE|Alu|AluJr	-	chr6	2948158	2962108	SERPINB6|ENST00000380524.5	-	2948158,2948913,2953043,2954591,2955523,2959167,2961893	2948699,2949069,2953186,2954709,2955670,2959342,2962108	0.933333
prostate_gland_male_adult_37_years	chr14	53217747	53217766	53217752	+	High_confidence	8	8	30	2.735949	3.538510	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217711	53719201	STRG.98416.1	+	53217711,53318030,53369451,53687198,53719111	53218055,53318138,53369501,53687374,53719201	0.500000
prostate_gland_male_adult_37_years	chr1	67141700	67141756	67141700	-	High_confidence	35	35	199	18.148464	5.770051	chr1	67141478	67141745	SINE|Alu|AluJr	+	chr1	67092716	67141887	STRG.3793.1	-	67092716,67096251,67115351,67125751,67127165,67131141,67141613	67093604,67096321,67115464,67125909,67127257,67131227,67141887	0.969849
prostate_gland_male_adult_37_years	chr2	159428345	159428357	159428356	-	RAMPAGE_only	19	19	37	3.374338	4.111865	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.783784
prostate_gland_male_adult_37_years	chr8	11795578	11795579	11795578	+	High_confidence	566	567	607	55.357377	5.280087	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.980231
prostate_gland_male_adult_37_years	chr2	96303166	96303200	96303166	-	RAMPAGE_only	7	7	21	1.915165	3.403989	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
prostate_gland_male_adult_37_years	chr3	132342351	132342372	132342351	+	RAMPAGE_only	5	5	10	0.911983	2.721928	chr3	132342301	132342515	DNA|hAT-Charlie|MER20	+	chr3	132317436	132352788	STRG.30239.5	+	132317436,132328266,132331646,132332191,132337455,132342551,132344926,132352719	132317576,132328362,132331733,132332344,132337554,132342644,132350002,132352788	0.600000
prostate_gland_male_adult_37_years	chr11	49173366	49173468	49173366	-	RAMPAGE_only	29	29	135	12.311772	4.437831	chr11	49173270	49173326	SINE|MIR|MIRb	-	chr11	49162802	49175960	FOLH1|ENST00000525629.1	-	49162802,49164704,49169194,49171194,49173356,49174891,49175858	49162890,49164772,49169258,49171277,49173476,49174977,49175960	0.955556
prostate_gland_male_adult_37_years	chr4	162740491	162740492	162740491	+	High_confidence	34	34	41	3.739131	3.768454	chr4	162739358	162740906	LTR|ERV1|LTR12C	+	chr4	162740667	162742048	AC005150.1|ENST00000512831.1	+	162740667,162741668	162740915,162742048	0.975610
prostate_gland_male_adult_37_years	chr20	34519418	34519473	34519472	+	RAMPAGE_only	5	5	19	1.732768	3.326360	chr20	34519417	34519502	SINE|Alu|AluJb	+	chr20	34516454	34540958	DYNLRB1|ENST00000374846.3	+	34516454,34526267,34534627,34540580	34516876,34526343,34534795,34540958	1.000000
prostate_gland_male_adult_37_years	chr7	87040212	87040223	87040212	-	RAMPAGE_only	7	8	14	1.276776	3.182006	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.571429
prostate_gland_male_adult_37_years	chr21	46142704	46142708	46142707	-	High_confidence	54	54	100	9.119831	5.230491	chr21	46142201	46143045	LTR|ERV1|LTR12	-	chr21	46136261	46142741	FTCD|ENST00000460011.5	-	46136261,46136914,46137238,46138507,46142108	46136494,46137073,46137334,46138646,46142741	0.920000
prostate_gland_male_adult_37_years	chr9	121313983	121314021	121314002	+	RAMPAGE_only	12	13	61	5.563097	4.383515	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
prostate_gland_male_adult_37_years	chr17	47056728	47056736	47056735	-	RAMPAGE_only	10	11	23	2.097561	3.675311	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.869565
prostate_gland_male_adult_37_years	chr16	11587465	11587495	11587465	-	High_confidence	5	5	14	1.276776	3.182006	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
prostate_gland_male_adult_37_years	chr4	89490948	89490949	89490948	+	High_confidence	227	230	241	21.978794	5.029309	chr4	89489873	89491365	LTR|ERV1|LTR12C	+	chr4	89490936	89491279	STRG.36441.1	+	89490936	89491279	0.863071
prostate_gland_male_adult_37_years	chr6	9041624	9041625	9041624	+	High_confidence	82	82	82	7.478262	4.777774	chr6	9040590	9042044	LTR|ERV1|LTR12C	+	chr6	9041624	9096238	AL591485.1|ENST00000645715.1	+	9041624,9046419,9092216,9095344	9042162,9046491,9092308,9096238	0.890244
prostate_gland_male_adult_37_years	chr3	148280084	148280085	148280084	-	High_confidence	55	55	58	5.289502	4.674199	chr3	148279782	148281080	LTR|ERV1|LTR12C	-	chr3	148195728	148280098	LINC02045|ENST00000460324.1	-	148195728,148207845,148210024,148220509,148279781	148195834,148207934,148210088,148220612,148280098	0.758621
prostate_gland_male_adult_37_years	chr2	69798994	69798999	69798997	-	High_confidence	33	43	73	6.657477	4.639922	chr2	69798831	69799610	LTR|ERV1|LTR19C	-	chr2	69789544	69798992	STRG.14257.1	-	69789544,69790264,69793702,69794072,69798787	69789926,69790436,69793803,69794221,69798992	0.917808
prostate_gland_male_adult_37_years	chr11	8016520	8016521	8016520	-	High_confidence	11	11	11	1.003181	3.095795	chr11	8016479	8016939	LTR|ERVL-MaLR|MLT1G	-	chr11	8011277	8016509	CASC23|NR_125366.1	-	8011277,8013573,8016074	8012268,8013730,8016509	1.000000
prostate_gland_male_adult_37_years	chr18	6834493	6834501	6834493	+	High_confidence	15	19	33	3.009544	4.351410	chr18	6834140	6834545	LINE|L2|L2c	-	chr18	6834479	6912415	ARHGAP28|ENST00000531294.5	+	6834479,6837196,6851033,6859811,6868149,6870589,6873408,6873683,6876130,6882136,6887156,6889887,6890429,6894834,6896501,6908959,6912059	6834539,6837414,6851115,6859897,6868234,6870732,6873574,6873775,6876208,6882299,6887239,6890085,6890543,6894891,6896626,6909024,6912415	0.909091
prostate_gland_male_adult_37_years	chr19	41545191	41545192	41545191	+	High_confidence	16	16	16	1.459173	3.030639	chr19	41544577	41545607	LTR|ERVK|LTR5A	+	chr19	41545191	41555251	AC243960.1|ENST00000595649.5	+	41545191,41549519,41551179,41551752,41553705,41554950,41555209	41545196,41549552,41551494,41551828,41553746,41555099,41555251	0.625000
prostate_gland_male_adult_37_years	chr1	20028511	20028516	20028515	+	High_confidence	14	15	24	2.188760	3.740953	chr1	20028464	20028814	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.625000
prostate_gland_male_adult_37_years	chr15	74896251	74896303	74896302	+	High_confidence	5	5	11	1.003181	2.845351	chr15	74896351	74896455	SINE|MIR|MIR3	+	chr15	74895433	74898228	MPI|ENST00000566556.1	+	74895433	74898228	1.000000
prostate_gland_male_adult_37_years	chr20	52175983	52175989	52175988	-	High_confidence	3	3	8	0.729587	2.500000	chr20	52175981	52176114	LTR|ERVL-MaLR|MLT1O	+	chr20	52088959	52176037	ZFP64|ENST00000477786.5	-	52088959,52097372,52098437,52160122,52164694,52165863,52175926	52089067,52097435,52098587,52160374,52164757,52166025,52176037	0.625000
prostate_gland_male_adult_37_years	chr8	143039256	143039267	143039266	+	High_confidence	7	8	24	2.188760	3.886842	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.666667
prostate_gland_male_adult_37_years	chr2	232890990	232891005	232891004	-	High_confidence	8	8	24	2.188760	3.970573	chr2	232890857	232891264	LINE|L2|L2c	+	chr2	232878697	232890980	STRG.22379.1	-	232878697,232881145,232882185,232883310,232883980,232885279,232888032,232890933	232879679,232881250,232882265,232883466,232884144,232885369,232888107,232890980	0.916667
prostate_gland_male_adult_37_years	chr12	10363706	10363707	10363706	+	High_confidence	101	104	125	11.399789	5.553317	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363647	10380013	STRG.87319.2	+	10363647,10374034,10379701	10364033,10374136,10380013	0.928000
prostate_gland_male_adult_37_years	chr14	102234513	102234615	102234614	-	High_confidence	5	5	26	2.371156	3.979098	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102229432	102235063	MOK|ENST00000522537.5	-	102229432,102232534,102233687,102234956	102229657,102232708,102233789,102235063	0.769231
prostate_gland_male_adult_37_years	chr7	5794470	5794471	5794470	+	High_confidence	17	17	20	1.823966	3.184184	chr7	5793408	5794887	LTR|ERV1|LTR12C	+	chr7	5794480	5815801	STRG.55032.2	+	5794480,5815758	5794887,5815801	0.700000
prostate_gland_male_adult_37_years	chr3	32940748	32940749	32940748	+	High_confidence	45	45	47	4.286321	4.277871	chr3	32939500	32941155	LTR|ERV1|LTR12C	+	chr3	32940761	32941152	STRG.24658.1	+	32940761	32941152	0.808511
prostate_gland_male_adult_37_years	chr15	75198891	75198917	75198916	+	High_confidence	7	7	23	2.097561	3.534219	chr15	75198623	75199037	LTR|ERV1|MER51A	-	chr15	75198891	75212169	C15orf39|ENST00000360639.6	+	75198891,75205998,75210748	75199161,75208824,75212169	0.913043
prostate_gland_male_adult_37_years	chr20	14929504	14929518	14929517	-	High_confidence	11	13	26	2.371156	3.803509	chr20	14929081	14929880	LTR|ERVL|MER21C	-	chr20	14884252	14929518	MACROD2-AS1|NR_037841.3	-	14884252,14888095,14929374	14884594,14888304,14929518	0.846154
prostate_gland_male_adult_37_years	chr9	73080369	73080370	73080369	-	High_confidence	17	18	18	1.641570	3.292770	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.944444
prostate_gland_male_adult_37_years	chr3	109316364	109316440	109316439	-	High_confidence	5	5	16	1.459173	3.452820	chr3	109316062	109316450	SINE|Alu|AluJr	-	chr3	109293787	109316517	DPPA2|ENST00000478945.1	-	109293787,109300370,109304474,109308031,109309025,109309169,109312544,109314509,109316283	109294004,109300435,109304670,109308293,109309079,109309330,109312692,109314555,109316517	0.875000
prostate_gland_male_adult_37_years	chr1	165892627	165892630	165892629	+	High_confidence	6	11	11	1.003181	2.732159	chr1	165892277	165892629	LTR|ERVL|LTR33C	-	chr1	165892651	165908100	UCK2|ENST00000462329.5	+	165892651,165896189,165903181,165905920,165907683	165892774,165896332,165903279,165905969,165908100	1.000000
prostate_gland_male_adult_37_years	chr19	15608040	15608041	15608040	-	High_confidence	1187	1195	1371	125.032888	5.400882	chr19	15607625	15609207	LTR|ERV1|LTR12C	-	chr19	15595277	15608029	STRG.120515.2	-	15595277,15607568	15596956,15608029	0.971554
prostate_gland_male_adult_37_years	chr9	39809835	39809859	39809843	-	High_confidence	6	6	23	2.097561	3.344457	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.608696
prostate_gland_male_adult_37_years	chr19	20358162	20358163	20358162	+	High_confidence	58	58	63	5.745494	4.975579	chr19	20357990	20358269	LTR|ERVL|LTR66	+	chr19	20358180	20370508	STRG.120820.1	+	20358180,20369177	20358333,20370508	0.920635
prostate_gland_male_adult_37_years	chr12	8681666	8681677	8681676	+	High_confidence	3	3	8	0.729587	2.500000	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	1.000000
prostate_gland_male_adult_37_years	chr1	239730464	239730465	239730464	-	High_confidence	182	188	250	22.799578	5.568399	chr1	239730338	239730702	LINE|L2|L2c	-	chr1	239707342	239730465	CHRM3-AS2|ENST00000628573.2	-	239707342,239714176,239720138,239727653,239730400	239707760,239714264,239720178,239727808,239730465	0.776000
prostate_gland_male_adult_37_years	chr2	200398747	200398788	200398747	+	RAMPAGE_only	2	2	8	0.729587	3.000000	chr2	200398745	200398915	SINE|MIR|MIR3	+	chr2	200393076	200467378	SPATS2L|ENST00000438761.5	+	200393076,200412310,200416378,200419249,200440648,200459768,200467289	200393273,200412419,200416428,200419496,200440784,200459827,200467378	0.875000
prostate_gland_male_adult_37_years	chr7	47539243	47539278	47539277	-	High_confidence	8	8	18	1.641570	3.461320	chr7	47539244	47539410	DNA|hAT-Charlie|Chap1_Mam	-	chr7	47369280	47539277	TNS3|ENST00000450444.5	-	47369280,47396799,47400392,47400784,47411726,47413936,47415093,47424100,47428311,47435281,47437262,47439486,47442002,47481102,47506906,47529035,47539074	47369621,47396904,47400458,47400914,47411802,47413997,47415206,47424184,47428376,47435404,47437313,47439658,47442055,47481141,47506944,47529147,47539277	0.722222
prostate_gland_male_adult_37_years	chr16	63618045	63618046	63618045	-	High_confidence	43	55	59	5.380701	4.672034	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.762712
prostate_gland_male_adult_37_years	chr7	100349864	100349885	100349884	+	RAMPAGE_only	5	5	9	0.820785	2.947703	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100351255	100358292	STAG3L5P-PVRIG2P-PILRB|ENST00000472646.1	+	100351255,100353919,100355142,100356749,100358219	100351410,100354012,100355240,100356883,100358292	0.555556
prostate_gland_male_adult_37_years	chr9	113582232	113582240	113582239	+	High_confidence	6	7	13	1.185578	2.873141	chr9	113582216	113582304	SINE|MIR|MIRb	+	chr9	113581635	113597737	RGS3|ENST00000487344.1	+	113581635,113591332,113594429,113594918,113595598,113596767	113584427,113591397,113594531,113594980,113595765,113597737	1.000000
prostate_gland_male_adult_37_years	chr12	31117606	31117612	31117606	-	High_confidence	4	5	14	1.276776	2.777363	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.928571
prostate_gland_male_adult_37_years	chr1	179842996	179843018	179842996	-	RAMPAGE_only	3	3	10	0.911983	2.721928	chr1	179842762	179843070	SINE|Alu|AluY	+	chr1	179839966	179877799	TOR1AIP2|ENST00000367612.7	-	179839966,179847534,179850844,179852631,179877238,179877692	179846828,179847636,179851363,179852811,179877373,179877799	0.900000
prostate_gland_male_adult_37_years	chr3	197913254	197913296	197913295	-	High_confidence	26	30	50	4.559916	4.610663	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.940000
prostate_gland_male_adult_37_years	chr16	68527836	68527837	68527836	+	High_confidence	36	36	38	3.465536	3.993133	chr16	68526564	68528236	LTR|ERV1|LTR12C	+	chr16	68527824	68528223	STRG.110235.1	+	68527824	68528223	0.894737
prostate_gland_male_adult_37_years	chr15	51936197	51936238	51936202	-	RAMPAGE_only	11	11	40	3.647933	2.692111	chr15	51935784	51936413	LTR|ERVL|LTR50	-	chr15	51919072	51930627	AC090971.3|ENST00000557871.1	-	51919072,51921783,51922721,51924039,51925745,51926780,51928206,51929333,51930530	51919145,51921873,51922908,51924177,51925881,51926870,51928291,51929478,51930627	0.550000
prostate_gland_male_adult_37_years	chr17	6853880	6853934	6853880	+	High_confidence	3	3	20	1.823966	3.584184	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853860	6902192	ALOX12P2|ENST00000574727.5	+	6853860,6854213,6892002,6894317,6894883,6895095,6895342,6896315,6896553,6898528,6898799,6899390,6899592,6899867	6854060,6854435,6892075,6894513,6895006,6895199,6895503,6896459,6896763,6898698,6898929,6899490,6899760,6902192	0.650000
prostate_gland_male_adult_37_years	chr7	10085480	10085490	10085489	-	High_confidence	9	9	25	2.279958	3.673270	chr7	10085029	10085727	LTR|ERV1|MER50	-	chr7	10084975	10085406	STRG.54788.1	-	10084975	10085406	0.680000
prostate_gland_male_adult_37_years	chr8	1506613	1506614	1506613	-	High_confidence	25	25	26	2.371156	3.783465	chr8	1506335	1507666	LTR|ERV1|LTR12C	-	chr8	1506308	1506601	STRG.62585.1	-	1506308	1506601	0.538462
prostate_gland_male_adult_37_years	chr9	108885871	108885872	108885871	-	RAMPAGE_only	12	12	12	1.094380	2.855389	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108867516	108893083	ELP1|ENST00000495759.5	-	108867516,108874894,108875632,108877994,108878622,108879445,108880051,108881704,108882124,108889331,108891202,108892985	108869182,108874970,108875735,108878149,108878750,108879557,108880165,108881765,108882187,108889393,108891404,108893083	1.000000
prostate_gland_male_adult_37_years	chr7	101095196	101095228	101095227	+	RAMPAGE_only	5	6	9	0.820785	2.750000	chr7	101095093	101095373	SINE|Alu|AluJr	+	chr7	101089610	101133244	STRG.59663.6	+	101089610,101133075	101095969,101133244	0.777778
prostate_gland_male_adult_37_years	chr11	121237410	121237411	121237410	+	High_confidence	14	14	17	1.550371	3.219528	chr11	121236927	121237620	LTR|ERVK|HERVK14-int	+	chr11	121237314	121245709	STRG.85914.1	+	121237314,121244758	121237469,121245709	0.764706
prostate_gland_male_adult_37_years	chr11	123469402	123469419	123469402	+	RAMPAGE_only	9	9	18	1.641570	3.175123	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123480737	123594838	GRAMD1B|ENST00000633087.1	+	123480737,123577366,123584311,123594081,123594734	123480893,123577577,123584332,123594166,123594838	0.666667
prostate_gland_male_adult_37_years	chr13	99496638	99496639	99496638	-	RAMPAGE_only	12	13	13	1.185578	2.855389	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99486961	99499306	LINC01232|NR_110731.1	-	99486961,99496134,99496374,99497248,99498685	99487816,99496217,99496544,99497336,99499306	0.692308
prostate_gland_male_adult_37_years	chr1	12572732	12572760	12572759	-	RAMPAGE_only	6	10	16	1.459173	2.608459	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.937500
prostate_gland_male_adult_37_years	chr5	2917834	2917852	2917840	+	High_confidence	7	9	32	2.918346	3.760017	chr5	2917481	2918186	LTR|ERV1|MER50	-	chr5	2917853	2920528	LOC105374620|NR_136207.1	+	2917853,2918673,2919016,2920424	2917904,2918825,2919168,2920528	0.718750
prostate_gland_male_adult_37_years	chr4	20392149	20392164	20392163	+	High_confidence	8	8	26	2.371156	3.738149	chr4	20392050	20393212	DNA|TcMar-Tigger|Tigger3b	-	chr4	20392188	20394856	SLIT2-IT1|ENST00000515882.1	+	20392188,20393349,20393565,20394528	20392263,20393453,20393659,20394856	1.000000
prostate_gland_male_adult_37_years	chr9	68975836	68975846	68975842	-	High_confidence	26	29	52	4.742312	4.863465	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.500000
prostate_gland_male_adult_37_years	chr18	6928496	6928528	6928527	-	High_confidence	6	6	25	2.279958	3.623465	chr18	6928222	6928872	LTR|ERV1|LTR9	+	chr18	6925477	6928572	LINC00668|ENST00000580197.5	-	6925477,6928119,6928436	6927584,6928219,6928572	1.000000
prostate_gland_male_adult_37_years	chr5	151310024	151310028	151310024	+	High_confidence	26	26	39	3.556734	4.240963	chr5	151309004	151310543	LTR|ERV1|LTR12C	+	chr5	151310243	151310540	STRG.45870.1	+	151310243	151310540	0.897436
prostate_gland_male_adult_37_years	chr9	121281793	121281851	121281850	+	RAMPAGE_only	8	10	21	1.915165	3.594466	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.571429
prostate_gland_male_adult_37_years	chr15	98103717	98103718	98103717	-	High_confidence	132	132	151	13.770945	4.810198	chr15	98103301	98104789	LTR|ERV1|LTR12C	-	chr15	98085692	98103712	LINC01582|ENST00000560195.1	-	98085692,98103234	98085774,98103712	0.960265
prostate_gland_male_adult_37_years	chr12	9065169	9065178	9065173	+	High_confidence	4	4	16	1.459173	2.983459	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.875000
prostate_gland_male_adult_37_years	chr8	80485592	80485655	80485592	+	High_confidence	16	16	53	4.833511	4.887658	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.792453
prostate_gland_male_adult_37_years	chr1	239408155	239408187	239408186	+	High_confidence	7	7	16	1.459173	3.202820	chr1	239407991	239408310	LTR|ERVL-MaLR|THE1C	+	chr1	239408219	239546612	CHRM3|ENST00000481779.1	+	239408219,239492708,239545640	239408249,239492807,239546612	0.562500
prostate_gland_male_adult_37_years	chr1	77532075	77532107	77532106	+	High_confidence	19	24	89	8.116650	5.320745	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.898876
prostate_gland_male_adult_37_years	chr16	35516862	35516882	35516862	+	RAMPAGE_only	4	4	12	1.094380	3.084963	chr16	35516603	35517040	LTR|ERVK|LTR3B_	+	chr16	35521989	35523896	STRG.108798.1	+	35521989	35523896	0.750000
prostate_gland_male_adult_37_years	chr4	177728735	177728757	177728735	+	High_confidence	10	11	32	2.918346	3.760891	chr4	177728388	177728944	LTR|ERVL|LTR18B	+	chr4	177728747	177853884	STRG.39624.1	+	177728747,177732366,177853854	177729017,177732479,177853884	0.781250
prostate_gland_male_adult_37_years	chr19	58025591	58025592	58025591	-	High_confidence	39	40	53	4.833511	4.373625	chr19	58025302	58025867	LTR|ERV1|LTR12_	-	chr19	58024183	58025581	STRG.123957.1	-	58024183	58025581	0.830189
prostate_gland_male_adult_37_years	chr6	20319698	20319699	20319698	+	High_confidence	8	8	8	0.729587	2.750000	chr6	20318737	20320042	LTR|ERV1|LTR12C	+	chr6	20319717	20320531	STRG.48447.1	+	20319717	20320531	0.750000
prostate_gland_male_adult_37_years	chr10	30999513	30999520	30999519	-	High_confidence	9	11	16	1.459173	2.655639	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.562500
prostate_gland_male_adult_37_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	16	17	27	2.462354	3.474505	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.962963
prostate_gland_male_adult_37_years	chrX	24348002	24348042	24348002	-	High_confidence	37	37	65	5.927890	4.741180	chrX	24347775	24348042	LTR|ERVL|LTR80B	-	chrX	24313516	24348040	STRG.132100.2	-	24313516,24313682,24313848,24314013,24346897,24347973	24313559,24313725,24313890,24314247,24347019,24348040	0.892308
prostate_gland_male_adult_37_years	chr20	8600695	8600708	8600707	+	High_confidence	6	6	16	1.459173	2.702820	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.750000
prostate_gland_male_adult_37_years	chr22	35241505	35241525	35241524	+	High_confidence	69	69	175	15.959705	5.853657	chr22	35241003	35241950	LINE|L1|L1PBa1	-	chr22	35241515	35265567	STRG.130308.2	+	35241515,35255544,35262322,35263077,35263795,35264647	35241660,35255689,35262421,35263226,35263874,35265567	0.645714
prostate_gland_male_adult_37_years	chr11	7906253	7906254	7906253	-	High_confidence	14	14	15	1.367975	3.467720	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.866667
prostate_gland_male_adult_37_years	chr5	124711715	124711722	124711721	-	RAMPAGE_only	8	8	16	1.459173	3.373557	chr5	124711630	124711684	LINE|L2|L2c	-	chr5	124636915	124744521	ZNF608|ENST00000504926.5	-	124636915,124639132,124641251,124643510,124644243,124646678,124649609,124701013,124744412	124637906,124639214,124641405,124643683,124644661,124649133,124649697,124701269,124744521	0.500000
prostate_gland_male_adult_37_years	chr20	33624708	33624725	33624708	+	RAMPAGE_only	14	14	45	4.103924	4.191831	chr20	33624662	33624719	LINE|L2|L2b	+	chr20	33619564	33636662	CBFA2T2|ENST00000491618.1	+	33619564,33623114,33623772,33624763,33628349,33629718,33636639	33619606,33623296,33623854,33625017,33628435,33629914,33636662	0.977778
prostate_gland_male_adult_37_years	chr12	3215196	3215241	3215196	+	RAMPAGE_only	3	3	15	1.367975	3.324863	chr12	3215140	3215247	SINE|MIR|MIRc	+	chr12	3201176	3282108	TSPAN9|ENST00000407263.2	+	3201176,3278420,3278991,3280381,3281197,3281733	3201256,3278612,3279066,3280483,3281329,3282108	0.866667
prostate_gland_male_adult_37_years	chr19	15900304	15900408	15900304	+	High_confidence	446	451	642	58.549318	5.226634	chr19	15899614	15900620	LTR|ERV1|LTR12C	+	chr19	15900309	15907234	STRG.120496.2	+	15900309,15902762	15902674,15907234	0.975078
prostate_gland_male_adult_37_years	chr4	142601110	142601122	142601121	-	RAMPAGE_only	6	6	15	1.367975	3.506891	chr4	142597986	142601688	LINE|L1|L1PA11	+	chr4	142086178	142560669	INPP4B|ENST00000510812.5	-	142086178,142108092,142112541,142122127,142123291,142124587,142145839,142160357,142173631,142193086,142208424,142208895,142237863,142260491,142270662,142305457,142314711,142402937,142405205,142429172,142431168,142462662,142560456	142086256,142108190,142112682,142122245,142123415,142124760,142145996,142160561,142173809,142193195,142208529,142209026,142238011,142260564,142270774,142305537,142314762,142403054,142405324,142429217,142431385,142462726,142560669	0.866667
prostate_gland_male_adult_37_years	chr1	156926272	156926277	156926272	+	RAMPAGE_only	5	5	12	1.094380	2.550341	chr1	156926159	156926576	LTR|ERVL-MaLR|MLT1F2	-	chr1	156920911	156933088	LRRC71|ENST00000490146.5	+	156920911,156921601,156923948,156924423,156924642,156924937,156927184,156927495,156927732,156927914,156929279,156929635,156930528,156931912,156932423,156932852	156920963,156921689,156924098,156924552,156924718,156925015,156927270,156927655,156927816,156928004,156929429,156929729,156930617,156932027,156932649,156933088	0.750000
prostate_gland_male_adult_37_years	chr7	134432430	134432436	134432435	-	High_confidence	7	10	20	1.823966	3.546439	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.700000
prostate_gland_male_adult_37_years	chr15	57516626	57516639	57516626	+	RAMPAGE_only	3	3	8	0.729587	2.500000	chr15	57516656	57516717	SINE|MIR|MIR	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
prostate_gland_male_adult_37_years	chr8	99893471	99893497	99893471	-	High_confidence	4	4	17	1.550371	3.219528	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.941176
prostate_gland_male_adult_37_years	chr3	132627106	132627127	132627118	-	High_confidence	9	12	46	4.195122	4.243300	chr3	132627080	132627408	LTR|ERV1|MER61C	+	chr3	132579178	132627074	ACAD11|ENST00000487024.1	-	132579178,132603228,132605097,132618633,132619467,132626690	132579558,132603327,132605205,132618772,132619545,132627074	0.913043
prostate_gland_male_adult_37_years	chrX	152457315	152457344	152457315	-	RAMPAGE_only	4	4	11	1.003181	2.663533	chrX	152457257	152457564	SINE|Alu|AluY	-	chrX	152167161	152451359	GABRA3|NM_000808.3	-	152167161,152189729,152197632,152208000,152224762,152255777,152284667,152345580,152364430,152451145	152168563,152189941,152197785,152208144,152224845,152255998,152284735,152345702,152364596,152451359	1.000000
prostate_gland_male_adult_37_years	chr1	67141844	67141862	67141844	-	High_confidence	89	94	190	17.327680	5.937278	chr1	67141751	67142227	LTR|ERV1|LTR15	-	chr1	67092716	67141887	STRG.3793.1	-	67092716,67096251,67115351,67125751,67127165,67131141,67141613	67093604,67096321,67115464,67125909,67127257,67131227,67141887	0.915789
prostate_gland_male_adult_37_years	chr4	177227164	177227165	177227164	-	High_confidence	106	107	114	10.396608	4.704907	chr4	177226748	177228090	LTR|ERV1|LTR12C	-	chr4	177220597	177227146	STRG.39556.1	-	177220597,177226585	177220675,177227146	0.956140
prostate_gland_male_adult_37_years	chr6	130978816	130978851	130978850	-	High_confidence	4	4	10	0.911983	2.646439	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.900000
prostate_gland_male_adult_37_years	chr12	14665609	14665636	14665635	+	High_confidence	13	14	28	2.553553	3.682006	chr12	14665652	14665749	LINE|L2|L2a	+	chr12	14665654	14757963	AC010168.1|ENST00000501178.2	+	14665654,14665858,14672265,14718034,14757594	14665697,14666013,14672314,14718075,14757963	0.892857
prostate_gland_male_adult_37_years	chr15	27161259	27161260	27161259	-	High_confidence	30	30	41	3.739131	4.534184	chr15	27161191	27161472	LTR|ERVL|LTR40a	-	chr15	27157614	27161319	GABRG3-AS1|ENST00000439938.2	-	27157614,27158265,27161021	27158155,27158396,27161319	0.658537
prostate_gland_male_adult_37_years	chr6	31186054	31186118	31186117	-	High_confidence	30	34	124	11.308591	5.613071	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31177306	31186513	STRG.49218.2	-	31177306,31186025	31177899,31186513	0.620968
prostate_gland_male_adult_37_years	chr3	42770599	42770600	42770599	+	High_confidence	309	312	349	31.828212	4.828743	chr3	42769529	42771022	LTR|ERV1|LTR12C	+	chr3	42770611	42773635	LOC729083|NR_122070.1	+	42770611,42773204	42771077,42773635	0.945559
prostate_gland_male_adult_37_years	chr9	121222983	121222992	121222983	-	High_confidence	7	7	15	1.367975	3.456565	chr9	121222658	121223359	LTR|ERV1|MER50	-	chr9	121221706	121222120	STRG.73176.1	-	121221706	121222120	0.533333
prostate_gland_male_adult_37_years	chr10	46370326	46370327	46370326	+	High_confidence	9	9	9	0.820785	2.725481	chr10	46370126	46370461	LTR|ERVK|LTR14A	+	chr10	46370346	46373563	FAM25BP|ENST00000624613.1	+	46370346,46371138,46373376	46370500,46371201,46373563	1.000000
prostate_gland_male_adult_37_years	chr4	183482238	183482239	183482238	-	High_confidence	68	69	70	6.383882	4.553924	chr4	183481823	183483228	LTR|ERV1|LTR12C	-	chr4	183474658	183482524	STRG.39667.1	-	183474658,183481755	183474881,183482524	0.942857
prostate_gland_male_adult_37_years	chr17	2975621	2975665	2975664	+	High_confidence	9	11	65	5.927890	4.893382	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975614	2991748	STRG.111664.3	+	2975614,2980286,2981194,2984982,2991296	2975771,2980365,2981248,2985066,2991748	0.830769
prostate_gland_male_adult_37_years	chr8	17692241	17692268	17692241	-	High_confidence	5	5	19	1.732768	3.016876	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.842105
prostate_gland_male_adult_37_years	chr8	21298215	21298239	21298215	+	High_confidence	3	3	11	1.003181	2.845351	chr8	21298161	21298736	LINE|L1|L1MEh	+	chr8	21298238	21309449	LOC101929172|NR_104677.1	+	21298238,21307769,21308109	21298407,21307893,21309449	0.909091
prostate_gland_male_adult_37_years	chr20	3023746	3023747	3023746	+	RAMPAGE_only	24	25	32	2.918346	4.115487	chr20	3022939	3023895	LTR|ERVK|LTR5B	+	chr20	2923206	3038668	PTPRA|ENST00000356147.3	+	2923206,2947981,2955608,2964271,2964860,2986764,2988031,2988337,3005055,3007343,3015848,3017815,3021308,3022053,3022688,3024471,3026686,3027120,3027706,3035584,3035789,3037153,3038058	2923285,2948024,2955698,2964350,2965202,2986849,2988105,2988474,3005146,3007420,3015885,3017913,3021428,3022220,3022824,3024621,3026780,3027197,3027841,3035710,3035941,3037289,3038668	0.968750
prostate_gland_male_adult_37_years	chr10	27983067	27983100	27983077	-	High_confidence	9	15	41	3.739131	4.415312	chr10	27982876	27983540	LTR|ERVL|LTR50	+	chr10	27812163	27983106	ARMC4|NM_001312689.1	-	27812163,27860624,27862433,27907662,27935009,27936725,27939896,27940562,27944221,27944815,27961567,27968922,27971107,27981465,27982928	27812625,27860846,27862622,27907777,27935252,27936880,27940007,27940805,27944431,27944962,27961715,27969018,27971313,27981582,27983106	0.902439
prostate_gland_male_adult_37_years	chr6	3254403	3254404	3254403	+	High_confidence	41	41	41	3.739131	4.308295	chr6	3253403	3254826	LTR|ERV1|LTR12C	+	chr6	3254411	3254816	STRG.47361.1	+	3254411,3254698	3254636,3254816	0.512195
prostate_gland_male_adult_37_years	chr3	132273504	132273565	132273551	-	RAMPAGE_only	9	9	42	3.830329	4.460903	chr3	132273471	132273816	LINE|L2|L2a	+	chr3	131534875	132265971	STRG.30029.3	-	131534875,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132039524,132044396,132076287,132265526	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132037710,132040321,132044482,132076431,132265971	0.500000
prostate_gland_male_adult_37_years	chr9	34482681	34482682	34482681	+	RAMPAGE_only	20	23	26	2.371156	3.580462	chr9	34481502	34483342	LTR|ERV1|LTR12C	-	chr9	34485045	34493328	DNAI1|ENST00000488369.1	+	34485045,34485436,34487945,34489173,34489322,34490011,34490368,34491494,34493193	34485240,34485517,34488018,34489201,34489449,34490124,34490488,34491554,34493328	0.692308
prostate_gland_male_adult_37_years	chr12	10363939	10363965	10363964	+	High_confidence	9	9	18	1.641570	3.281036	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.666667
prostate_gland_male_adult_37_years	chr1	20028407	20028426	20028407	+	High_confidence	10	12	23	2.097561	3.609668	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028429	20091158	PLA2G5|ENST00000465698.5	+	20028429,20059631,20068872,20084820,20086082,20088824,20089788,20090567	20028709,20059692,20069032,20084870,20086227,20088943,20089895,20091158	0.826087
prostate_gland_male_adult_37_years	chr17	8062615	8062633	8062629	+	RAMPAGE_only	31	31	111	10.123013	5.668869	chr17	8062291	8063901	LTR|ERVK|HERVK-int	+	chr17	8056894	8063106	STRG.112047.1	+	8056894,8062619	8057148,8063106	0.936937
prostate_gland_male_adult_37_years	chr2	107826806	107826831	107826820	-	High_confidence	3	3	19	1.732768	3.308271	chr2	107826465	107826780	SINE|Alu|AluSx1	-	chr2	107825740	107826836	RGPD4-AS1|ENST00000594764.5	-	107825740,107826552	107826126,107826836	0.631579
prostate_gland_male_adult_37_years	chr7	105399356	105399357	105399356	-	High_confidence	53	61	77	7.022270	4.213081	chr7	105399077	105399551	LTR|ERVL-MaLR|MLT1F1	-	chr7	105203626	105399308	SRPK2|ENST00000462282.5	-	105203626,105206400,105268805,105399155	105203785,105206529,105268869,105399308	0.896104
prostate_gland_male_adult_37_years	chr5	149331923	149331924	149331923	+	RAMPAGE_only	9	9	12	1.094380	2.663533	chr5	149331910	149332114	LTR|ERVL-MaLR|MLT1K	-	chr5	149315639	149341802	AFAP1L1|ENST00000513665.1	+	149315639,149316150,149317728,149319581,149320390,149322605,149329665,149332694,149335593,149340006	149315914,149316303,149317940,149319727,149320463,149322717,149329830,149332873,149335722,149341802	0.916667
prostate_gland_male_adult_37_years	chr16	58749666	58749670	58749669	+	High_confidence	32	33	54	4.924709	4.603910	chr16	58748675	58750043	LTR|ERV1|LTR12C	+	chr16	58749676	58862081	AC092378.1|ENST00000565722.1	+	58749676,58862034	58750113,58862081	0.777778
prostate_gland_male_adult_37_years	chr3	148280886	148280917	148280886	+	High_confidence	12	12	37	3.374338	3.787302	chr3	148279782	148281080	LTR|ERV1|LTR12C	-	chr3	148280890	148312160	LINC02046|ENST00000469812.1	+	148280890,148288934,148312110	148281109,148289043,148312160	0.540541
prostate_gland_male_adult_37_years	chr7	55862734	55862765	55862760	-	High_confidence	26	37	97	8.846236	5.201525	chr7	55862516	55862760	SINE|MIR|MIRb	-	chr7	55844536	55862755	SEPT14|ENST00000477628.1	-	55844536,55846516,55850786,55861942,55862687	55844718,55846637,55850906,55862011,55862755	0.793814
prostate_gland_male_adult_37_years	chr1	111755228	111755246	111755245	+	High_confidence	4	5	12	1.094380	2.584963	chr1	111755187	111755259	LINE|L2|L2a	-	chr1	111755244	111765830	DDX20|ENST00000533164.5	+	111755244,111755812,111756645,111760473,111760705,111760986,111761225,111762254,111762676,111762905,111765736	111755394,111756225,111756740,111760588,111760848,111761125,111761284,111762337,111762782,111763007,111765830	0.500000
prostate_gland_male_adult_37_years	chr13	44456260	44456293	44456292	-	RAMPAGE_only	9	9	34	3.100743	4.160705	chr13	44456064	44456586	LTR|ERV1|LTR12	-	chr13	44432142	44474301	TSC22D1|NM_001243798.1	-	44432142,44436043,44474217	44434883,44436095,44474301	0.911765
prostate_gland_male_adult_37_years	chr7	45940414	45940452	45940451	+	High_confidence	17	17	53	4.833511	4.150436	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45940467	45977599	STRG.56961.1	+	45940467,45977518	45940880,45977599	0.735849
prostate_gland_male_adult_37_years	chr7	77306762	77306790	77306789	+	RAMPAGE_only	4	5	8	0.729587	2.500000	chr7	77305135	77307428	LINE|L1|L1MA5A	-	chr7	77293052	77329533	CCDC146|ENST00000488998.1	+	77293052,77294662,77329395	77293200,77294938,77329533	0.500000
prostate_gland_male_adult_37_years	chr15	93863039	93863066	93863065	+	High_confidence	8	8	21	1.915165	3.439936	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.952381
prostate_gland_male_adult_37_years	chr12	106684728	106684779	106684732	+	High_confidence	30	30	143	13.041359	4.894378	chr12	106684751	106684909	LINE|CR1|L3	+	chr12	106684698	106762804	RFX4|NM_032491.5	+	106684698,106686883,106689286,106696282,106709329,106711452,106715399,106719959,106720758,106732129,106732923,106747436,106750654,106761196	106684908,106687097,106689364,106696446,106709430,106711511,106715544,106720054,106720876,106732249,106733085,106747599,106750793,106762804	0.895105
prostate_gland_male_adult_37_years	chr20	50131130	50131190	50131139	-	High_confidence	10	10	53	4.833511	4.680566	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	1.000000
prostate_gland_male_adult_37_years	chrY	3002893	3002905	3002900	+	High_confidence	9	9	30	2.735949	4.090234	chrY	3002436	3002992	LTR|ERV1|LTR4	+	chrY	3002911	3097217	LINC00278|ENST00000444263.5	+	3002911,3079283,3096994	3003217,3079341,3097217	0.533333
prostate_gland_male_adult_37_years	chr3	105951357	105951402	105951400	+	High_confidence	12	17	32	2.918346	3.738609	chr3	105949536	105951560	LINE|L1|L1MCa	-	chr3	105951360	105951739	STRG.28176.1	+	105951360	105951739	0.625000
prostate_gland_male_adult_37_years	chr3	155646970	155647011	155647003	-	High_confidence	8	14	63	5.745494	4.307433	chr3	155646900	155647041	LTR|ERVL-MaLR|MLT1F1	+	chr3	155497295	155647090	STRG.31042.1	-	155497295,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155646899	155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155647090	1.000000
prostate_gland_male_adult_37_years	chr17	41871804	41871820	41871819	-	RAMPAGE_only	9	9	15	1.367975	2.549523	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.866667
prostate_gland_male_adult_37_years	chr3	44882078	44882124	44882097	+	RAMPAGE_only	33	33	122	11.126194	5.403526	chr3	44882057	44882216	SINE|Alu|FAM	-	chr3	44874634	44914656	STRG.25340.1	+	44874634,44882080,44885324,44887688,44890602,44893576,44896708,44901523,44901792,44903883,44906948,44910089,44910957,44911269,44913583	44874697,44882215,44885498,44887795,44890732,44893695,44896816,44901698,44901931,44903987,44907200,44910368,44911127,44911406,44914656	0.942623
prostate_gland_male_adult_37_years	chr8	11795648	11795674	11795667	+	High_confidence	5	5	16	1.459173	3.375000	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	1.000000
prostate_gland_male_adult_37_years	chr22	39021135	39021161	39021155	+	High_confidence	10	10	41	3.739131	4.145972	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.926829
prostate_gland_male_adult_37_years	chr5	115296212	115296236	115296212	-	High_confidence	3	3	11	1.003181	3.121928	chr5	115296013	115296236	SINE|MIR|MIRb	-	chr5	115267638	115296268	CCDC112|ENST00000395557.4	-	115267638,115268881,115269702,115271212,115275215,115275993,115276964,115279646,115284786,115295909	115267918,115269000,115269798,115271626,115275606,115276069,115277054,115279768,115284908,115296268	0.818182
prostate_gland_male_adult_37_years	chr2	38515639	38515690	38515639	-	High_confidence	2	2	17	1.550371	3.734522	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38458636	38515740	LOC101929596|NR_110259.1	-	38458636,38469243,38482958,38496274,38515446	38458875,38469441,38483156,38496478,38515740	0.823529
prostate_gland_male_adult_37_years	chr15	65300634	65300635	65300634	-	High_confidence	378	387	403	36.752921	4.763019	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65234603	65300622	STRG.104792.1	-	65234603,65259463,65260884,65263148,65266561,65270934,65300198	65234823,65259542,65261026,65263320,65266768,65271072,65300622	0.935484
prostate_gland_male_adult_37_years	chr8	82442409	82442414	82442413	+	High_confidence	11	11	20	1.823966	3.541446	chr8	82441240	82442829	LTR|ERV1|LTR12C	+	chr8	82442617	82488363	STRG.65264.1	+	82442617,82488144	82442914,82488363	0.900000
prostate_gland_male_adult_37_years	chr12	8788250	8788253	8788252	+	High_confidence	6	8	10	0.911983	2.947703	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.800000
prostate_gland_male_adult_37_years	chr10	45594315	45594344	45594315	-	High_confidence	2	2	7	0.638388	2.521641	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45454592	45594491	STRG.75979.3	-	45454592,45459119,45461230,45464238,45489366,45533109,45553111,45594234	45458543,45459267,45461411,45464327,45489417,45533289,45553204,45594491	1.000000
prostate_gland_male_adult_37_years	chr1	179312569	179312570	179312569	+	RAMPAGE_only	11	11	16	1.459173	3.500000	chr1	179312548	179312870	LTR|ERVL|LTR33	+	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	1.000000
prostate_gland_male_adult_37_years	chr21	45593653	45593676	45593653	+	High_confidence	4	5	10	0.911983	2.725481	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	0.900000
prostate_gland_male_adult_37_years	chr15	95638315	95638329	95638315	+	High_confidence	3	3	8	0.729587	2.807355	chr15	95638216	95638514	SINE|Alu|AluYm1	-	chr15	95638345	95716626	AC015574.1|ENST00000615194.1	+	95638345,95712576,95716392	95638519,95712657,95716626	0.500000
prostate_gland_male_adult_37_years	chr17	62520829	62520841	62520840	+	RAMPAGE_only	6	6	14	1.276776	2.950212	chr17	62520890	62521168	SINE|Alu|AluJr	+	chr17	62480767	62615481	TLK2|NM_001284363.1	+	62480767,62481120,62520772,62522203,62523133,62536169,62552301,62553662,62560015,62565000,62573214,62576708,62578476,62580110,62586134,62596584,62600650,62602041,62606129,62608040,62612391	62480787,62481206,62520844,62522273,62523177,62536337,62552397,62553755,62560126,62565137,62573367,62576775,62578574,62580192,62586226,62596674,62600820,62602180,62606241,62608148,62615481	0.500000
prostate_gland_male_adult_37_years	chr6	19806525	19806555	19806554	-	High_confidence	8	9	18	1.641570	2.891061	chr6	19806147	19807531	LTR|ERV1|LTR12C	-	chr6	19806122	19806654	STRG.48425.1	-	19806122	19806654	0.888889
prostate_gland_male_adult_37_years	chr1	166850123	166850144	166850124	+	RAMPAGE_only	6	9	20	1.823966	3.441446	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166848886	166856193	STRG.7258.3	+	166848886,166849787	166849733,166856193	1.000000
prostate_gland_male_adult_37_years	chr11	134287089	134287103	134287102	+	High_confidence	9	9	22	2.006363	3.458525	chr11	134286878	134287175	SINE|Alu|AluY	+	chr11	134287101	134289001	GLB1L3|ENST00000532985.1	+	134287101,134288797	134287327,134289001	0.681818
prostate_gland_male_adult_37_years	chr11	123797502	123797524	123797523	+	High_confidence	6	6	13	1.185578	2.584963	chr11	123796966	123797634	LTR|ERV1|LTR76	-	chr11	123797530	123817278	STRG.86072.1	+	123797530,123797765,123816986	123797665,123797992,123817278	0.846154
prostate_gland_male_adult_37_years	chr22	23016497	23016498	23016497	-	High_confidence	143	144	164	14.956523	4.037113	chr22	23016096	23017584	LTR|ERV1|LTR12C	-	chr22	23014240	23016484	STRG.129463.1	-	23014240,23016092	23014683,23016484	0.957317
prostate_gland_male_adult_37_years	chr3	12883665	12883666	12883665	+	High_confidence	51	51	51	4.651114	4.333903	chr3	12882707	12883979	LTR|ERV1|LTR12C	+	chr3	12883664	12894659	STRG.23768.1	+	12883664,12894263	12884005,12894659	0.823529
prostate_gland_male_adult_37_years	chr7	38305306	38305358	38305350	-	High_confidence	4	4	29	2.644751	3.909368	chr7	38305199	38305558	LTR|Gypsy|LTR81B	-	chr7	38304696	38305360	STRG.56546.1	-	38304696	38305360	0.827586
prostate_gland_male_adult_37_years	chr12	107864654	107864677	107864675	-	High_confidence	3	6	10	0.911983	2.725481	chr12	107864193	107865394	LTR|ERV1|LTR12D	+	chr12	107839349	107864562	AC126177.4|ENST00000551629.2	-	107839349,107845400,107845962,107864441	107839366,107845587,107846117,107864562	0.500000
prostate_gland_male_adult_37_years	chr4	42267009	42267010	42267009	+	RAMPAGE_only	26	26	26	2.371156	3.580462	chr4	42265755	42267319	LTR|ERV1|LTR12C	+	chr4	42151027	42268110	AC111006.1|ENST00000645181.1	+	42151027,42210373,42238693,42250920,42259811,42264124,42267068	42151563,42210484,42238898,42251218,42259882,42264185,42268110	0.730769
prostate_gland_male_adult_37_years	chr9	117466001	117466079	117466030	-	High_confidence	86	99	212	19.334043	5.446962	chr9	117466000	117466092	LINE|L2|L2c	+	chr9	117431472	117466247	STRG.72913.1	-	117431472,117433256,117436870,117449057,117462547,117465934	117432451,117433406,117437754,117449177,117462718,117466247	0.844340
prostate_gland_male_adult_37_years	chr5	150640038	150640051	150640050	+	High_confidence	5	5	15	1.367975	3.182006	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.933333
prostate_gland_male_adult_37_years	chr4	39544055	39544056	39544055	-	High_confidence	62	63	76	6.931072	4.673660	chr4	39543948	39544368	LTR|ERVK|LTR3B	-	chr4	39539408	39543875	STRG.34971.1	-	39539408,39543823	39539775,39543875	0.894737
prostate_gland_male_adult_37_years	chrX	283503	283509	283503	+	High_confidence	4	4	12	1.094380	2.855389	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.666667
prostate_gland_male_adult_37_years	chrX	111718227	111718228	111718227	+	High_confidence	8	8	12	1.094380	2.855389	chrX	111718150	111718232	LINE|L2|L2	-	chrX	111717878	111728270	ALG13|ENST00000623622.1	+	111717878,111718111,111720094,111723797,111724933,111726808,111727331,111727613,111728184	111717927,111718274,111720170,111723898,111725061,111727055,111727445,111727770,111728270	0.500000
prostate_gland_male_adult_37_years	chr7	107580442	107580476	107580458	+	High_confidence	11	11	45	4.103924	4.371379	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.977778
prostate_gland_male_adult_37_years	chr2	172228089	172228091	172228089	+	High_confidence	26	53	62	5.654295	5.035177	chr2	172228128	172228425	SINE|Alu|AluJr	+	chr2	172228099	172228799	STRG.18687.1	+	172228099	172228799	0.693548
prostate_gland_male_adult_37_years	chr13	63740746	63740747	63740746	+	RAMPAGE_only	12	12	12	1.094380	2.751629	chr13	63740314	63740912	LTR|ERV1|HERVE-int	-	chr13	63742340	63742804	OR7E156P|ENST00000400303.3	+	63742340	63742804	0.833333
prostate_gland_male_adult_37_years	chr2	200174796	200174804	200174796	-	High_confidence	4	4	11	1.003181	2.646439	chr2	200174601	200175916	LTR|ERV1|LTR12C	+	chr2	200087791	200174733	STRG.20676.1	-	200087791,200088334,200174569	200087872,200088421,200174733	0.727273
prostate_gland_male_adult_37_years	chr13	110822106	110822107	110822106	+	High_confidence	165	165	174	15.868507	4.842078	chr13	110820975	110822522	LTR|ERV1|LTR12C	+	chr13	110822124	110825998	STRG.96308.1	+	110822124,110824862,110825759	110822547,110825070,110825998	0.936782
prostate_gland_male_adult_37_years	chr22	42644562	42644626	42644615	-	High_confidence	7	7	30	2.735949	3.866433	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	0.966667
prostate_gland_male_adult_37_years	chr13	42999647	42999658	42999657	+	RAMPAGE_only	3	3	9	0.820785	2.500000	chr13	42999404	43000000	LTR|ERVL|MER70B	+	chr13	43023202	43114224	DNAJC15|ENST00000379221.3	+	43023202,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43114224	0.888889
prostate_gland_male_adult_37_years	chr12	52094810	52094856	52094855	-	RAMPAGE_only	38	43	75	6.839874	4.664816	chr12	52094765	52094834	LTR|ERVL-MaLR|MLT1H	-	chr12	52089218	52096556	STRG.89187.10	-	52089218,52094678	52092108,52096556	0.746667
prostate_gland_male_adult_37_years	chr5	170267210	170267256	170267210	-	High_confidence	7	7	22	2.006363	3.243300	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	1.000000
prostate_gland_male_adult_37_years	chr3	25852565	25852600	25852599	+	High_confidence	50	52	103	9.393426	4.538187	chr3	25851590	25853021	LTR|ERV1|LTR12C	+	chr3	25852588	25853234	STRG.24406.1	+	25852588	25853234	0.922330
prostate_gland_male_adult_37_years	chr15	96285489	96285547	96285526	-	RAMPAGE_only	4	4	14	1.276776	3.182006	chr15	96285441	96285601	LINE|RTE-BovB|MamRTE1	+	chr15	96285067	96289265	AC016251.1|ENST00000624299.1	-	96285067	96289265	0.642857
prostate_gland_male_adult_37_years	chr11	123061200	123061322	123061256	-	High_confidence	31	32	161	14.682929	5.181939	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.962733
prostate_gland_male_adult_37_years	chr6	2877281	2877290	2877289	-	High_confidence	5	5	10	0.911983	2.921928	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2876510	SERPINB9P1|NR_033851.1	-	2854656,2876292	2855690,2876510	0.900000
prostate_gland_male_adult_37_years	chr1	20032730	20032734	20032733	+	RAMPAGE_only	10	11	18	1.641570	3.149673	chr1	20031175	20034775	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.611111
prostate_gland_male_adult_37_years	chr9	84409296	84409297	84409296	+	High_confidence	13	13	13	1.185578	2.873141	chr9	84408306	84409815	LTR|ERV1|LTR12C	+	chr9	84409484	84412197	STRG.71078.1	+	84409484,84412081	84409840,84412197	0.923077
prostate_gland_male_adult_37_years	chr2	33797847	33797848	33797847	+	High_confidence	11	11	15	1.367975	3.235926	chr2	33797498	33798174	LTR|ERV1|LTR12	+	chr2	33797833	33798256	STRG.12478.1	+	33797833	33798256	0.600000
prostate_gland_male_adult_37_years	chr4	151353480	151353505	151353504	-	High_confidence	5	5	12	1.094380	2.663533	chr4	151352921	151353772	LTR|ERV1|LTR12	-	chr4	151333774	151353224	AC104819.3|ENST00000603264.1	-	151333774,151352899	151333989,151353224	0.666667
prostate_gland_male_adult_37_years	chr16	64343941	64343964	64343963	+	High_confidence	7	7	13	1.185578	2.688722	chr16	64343711	64345204	LTR|ERV1|LTR12C	+	chr16	64343938	64364808	STRG.109644.1	+	64343938,64364778	64344392,64364808	0.692308
prostate_gland_male_adult_37_years	chr9	127527607	127527608	127527607	-	High_confidence	7	7	7	0.638388	2.521641	chr9	127527457	127527583	SINE|MIR|MIRc	-	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.571429
prostate_gland_male_adult_37_years	chrX	72305913	72305914	72305913	-	High_confidence	4944	5704	5822	530.956584	5.462883	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144885.1	-	72301637,72302809,72305301,72305824	72302244,72302934,72305422,72305914	0.975094
prostate_gland_male_adult_37_years	chr18	35730747	35730853	35730852	-	High_confidence	40	42	252	22.981975	5.784619	chr18	35730699	35731255	LTR|ERVL|LTR18B	-	chr18	35683208	35730908	STRG.117550.1	-	35683208,35687001,35690281,35696215,35696988,35711985,35719595,35730681	35686903,35687131,35690443,35696339,35697123,35712110,35719749,35730908	0.773810
prostate_gland_male_adult_37_years	chr3	188568978	188569044	188569043	+	High_confidence	15	19	99	9.028633	4.515736	chr3	188568967	188569135	LINE|L2|L2a	-	chr3	188569030	188760201	LPP|ENST00000471917.1	+	188569030,188609160,188708266,188760112	188569128,188609844,188708393,188760201	0.959596
prostate_gland_male_adult_37_years	chr15	45483084	45483100	45483084	-	RAMPAGE_only	9	9	25	2.279958	3.414441	chr15	45482787	45483083	SINE|Alu|AluJr	-	chr15	45479612	45522804	SLC30A4|NM_013309.5	-	45479612,45486610,45487526,45488840,45490727,45511137,45521963,45522606	45485317,45486745,45487632,45489042,45490881,45511284,45522468,45522804	0.920000
prostate_gland_male_adult_37_years	chr20	50130092	50130142	50130101	-	RAMPAGE_only	12	12	35	3.191941	3.794167	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.942857
prostate_gland_male_adult_37_years	chr13	48444669	48444670	48444669	-	High_confidence	7	7	11	1.003181	3.095795	chr13	48444533	48444706	LTR|ERVL|MER21A	-	chr13	48389566	48444667	LPAR6|ENST00000465365.6	-	48389566,48401297,48404180,48408623,48415699,48417166,48422649,48423992,48426579,48439608,48444552	48389812,48401407,48404263,48408767,48415810,48417320,48422790,48424119,48426795,48439812,48444667	0.818182
prostate_gland_male_adult_37_years	chr17	20017144	20017145	20017144	+	High_confidence	135	135	143	13.041359	5.152225	chr17	20016290	20017558	LTR|ERV1|LTR12C	+	chr17	20017144	20096715	SPECC1|ENST00000582604.1	+	20017144,20017986,20096630	20017605,20018102,20096715	0.916084
prostate_gland_male_adult_37_years	chr5	165241751	165241756	165241751	-	High_confidence	6	6	12	1.094380	2.663533	chr5	165241000	165242560	LTR|ERVL|ERVL-B4-int	-	chr5	165220576	165241752	LINC01938|ENST00000521341.1	-	165220576,165240461,165241628	165222020,165240757,165241752	0.833333
prostate_gland_male_adult_37_years	chr15	75347037	75347066	75347039	+	High_confidence	6	9	19	1.732768	3.725481	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.526316
prostate_gland_male_adult_37_years	chr10	47490459	47490460	47490459	-	High_confidence	33	34	34	3.100743	3.422886	chr10	47490325	47490660	LTR|ERVK|LTR14A	-	chr10	47487218	47490407	FAM25G|ENST00000481177.1	-	47487218,47489585,47490286	47487408,47489648,47490407	0.970588
prostate_gland_male_adult_37_years	chr16	70590319	70590329	70590328	+	RAMPAGE_only	20	20	37	3.374338	4.357838	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.756757
prostate_gland_male_adult_37_years	chr7	137268353	137268579	137268452	-	High_confidence	761	798	2586	235.838840	6.488986	chr7	137268351	137268846	LTR|ERV1|LTR2B	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.989172
prostate_gland_male_adult_37_years	chr1	20685302	20685320	20685302	-	High_confidence	6	6	26	2.371156	3.573661	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.961538
prostate_gland_male_adult_37_years	chr19	2796023	2796025	2796024	+	High_confidence	6	8	11	1.003181	2.721928	chr19	2795836	2796057	LINE|L1|L1MD1	-	chr19	2796006	2813382	THOP1|ENST00000586677.5	+	2796006,2799688,2805015,2806916,2807441,2808242,2810303,2810639,2811597,2813114	2796188,2799791,2805176,2807052,2807808,2808444,2810490,2810768,2811734,2813382	0.727273
prostate_gland_male_adult_37_years	chr18	58460415	58460420	58460415	+	High_confidence	27	32	42	3.830329	4.600978	chr18	58459211	58460806	LTR|ERV1|LTR12C	+	chr18	58460424	58460922	STRG.118520.1	+	58460424	58460922	0.761905
prostate_gland_male_adult_37_years	chr6	43013383	43013393	43013392	-	High_confidence	15	15	23	2.097561	4.229871	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
prostate_gland_male_adult_37_years	chr7	107580245	107580272	107580264	+	High_confidence	320	322	1944	177.289522	6.442620	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.958848
prostate_gland_male_adult_37_years	chr1	173637712	173637713	173637712	+	High_confidence	211	212	255	23.255570	6.815461	chr1	173637250	173637824	LTR|ERV1|LTR10C	+	chr1	173637718	173643509	STRG.7685.2	+	173637718,173640254	173638034,173643509	0.537255
prostate_gland_male_adult_37_years	chr13	74552842	74552850	74552842	+	High_confidence	11	11	18	1.641570	3.499228	chr13	74552819	74552976	LTR|ERVL-MaLR|MLT1J-int	+	chr13	74552842	74555738	LINC00347|ENST00000451336.2	+	74552842,74554656,74555224	74552903,74554760,74555738	0.888889
prostate_gland_male_adult_37_years	chr4	73080839	73080872	73080839	-	High_confidence	4	4	14	1.276776	2.777363	chr4	73080811	73080939	SINE|Alu|FAM	-	chr4	73077368	73080810	ANKRD17|ENST00000510127.1	-	73077368,73078641,73080720	73077533,73078890,73080810	0.857143
prostate_gland_male_adult_37_years	chr3	139344537	139344579	139344547	+	High_confidence	31	31	82	7.478262	4.978075	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.926829
prostate_gland_male_adult_37_years	chr1	240763381	240763382	240763381	+	High_confidence	9	11	14	1.276776	2.842371	chr1	240762307	240763695	LTR|ERV1|LTR12C	+	chr1	240763381	240776044	AL365184.1|ENST00000644500.1	+	240763381,240765437,240768151,240770765,240771082,240774525,240775804	240763862,240765599,240768304,240770902,240771183,240774600,240776044	0.857143
prostate_gland_male_adult_37_years	chr22	23705502	23705514	23705502	-	RAMPAGE_only	7	7	25	2.279958	3.605389	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.880000
prostate_gland_male_adult_37_years	chr5	151687223	151687245	151687244	-	High_confidence	5	5	15	1.367975	3.323231	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
prostate_gland_male_adult_37_years	chr19	3062982	3062986	3062982	-	High_confidence	5	5	12	1.094380	2.550341	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.916667
prostate_gland_male_adult_37_years	chr19	20423697	20423704	20423697	-	RAMPAGE_only	14	16	39	3.556734	3.332904	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.846154
prostate_gland_male_adult_37_years	chr4	81154211	81154222	81154221	-	High_confidence	20	20	54	4.924709	4.411752	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.981481
prostate_gland_male_adult_37_years	chr14	53217609	53217655	53217654	+	High_confidence	14	17	56	5.107106	4.881182	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217711	53719201	STRG.98416.1	+	53217711,53318030,53369451,53687198,53719111	53218055,53318138,53369501,53687374,53719201	0.785714
prostate_gland_male_adult_37_years	chr15	93900598	93900599	93900598	-	High_confidence	10	10	10	0.911983	2.921928	chr15	93899800	93901385	LTR|ERV1|MER52A	-	chr15	93899262	93900337	LINC01579|ENST00000554261.1	-	93899262,93900035	93899336,93900337	0.600000
prostate_gland_male_adult_37_years	chr4	87258926	87258948	87258947	+	High_confidence	25	25	57	5.198304	4.420095	chr4	87258736	87259104	LTR|ERVL-MaLR|MSTD	+	chr4	87258938	87282131	STRG.36238.1	+	87258938,87267864,87277628,87278623,87282071	87259029,87268022,87277743,87278708,87282131	0.631579
prostate_gland_male_adult_37_years	chr1	209428987	209429013	209429012	+	High_confidence	8	8	22	2.006363	3.568084	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429082	209430621	MIR205HG|ENST00000444286.1	+	209429082,209430424	209429408,209430621	0.909091
prostate_gland_male_adult_37_years	chr3	132285409	132285410	132285409	-	High_confidence	21	23	27	2.462354	4.056021	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.629630
prostate_gland_male_adult_37_years	chr5	162883444	162883451	162883444	+	High_confidence	24	26	39	3.556734	3.871011	chr5	162882732	162883864	LTR|ERV1|LTR12C	+	chr5	162883436	162883788	STRG.46225.1	+	162883436	162883788	0.871795
prostate_gland_male_adult_37_years	chr12	643627	643636	643635	-	High_confidence	16	16	50	4.559916	4.297279	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.580000
prostate_gland_male_adult_37_years	chr8	33755747	33755802	33755773	+	High_confidence	6	6	34	3.100743	4.513795	chr8	33749669	33756203	LINE|L1|L1PB1	-	chr8	33755826	34038916	STRG.63852.1	+	33755826,33796293,34034885,34038362	33755905,33796436,34034924,34038916	0.735294
prostate_gland_male_adult_37_years	chr6	56785861	56785868	56785867	-	High_confidence	11	11	19	1.732768	2.905765	chr6	56779724	56785868	LINE|L1|L1PA3	-	chr6	56670674	56785879	DST|ENST00000522538.5	-	56670674,56699652,56701887,56704279,56735227,56785770	56670807,56699745,56701965,56704369,56735289,56785879	0.894737
prostate_gland_male_adult_37_years	chr13	71483061	71483088	71483061	-	RAMPAGE_only	7	7	14	1.276776	3.026987	chr13	71482793	71483101	SINE|Alu|AluSq2	-	chr13	71439945	71866769	DACH1|ENST00000619232.1	-	71439945,71475140,71475705,71479168,71488996,71557023,71559819,71572839,71573417,71630555,71681794,71865921	71440692,71475209,71475849,71479316,71489148,71557158,71559955,71573012,71573573,71630717,71681910,71866769	0.928571
prostate_gland_male_adult_37_years	chr20	24930628	24930692	24930639	+	High_confidence	32	32	136	12.402971	5.466881	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930641	24932970	STRG.124967.1	+	24930641,24931346	24930774,24932970	0.963235
prostate_gland_male_adult_37_years	chr11	111097312	111097380	111097351	-	High_confidence	17	17	62	5.654295	4.496704	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.935484
prostate_gland_male_adult_37_years	chr12	55479527	55479533	55479527	-	High_confidence	5	7	13	1.185578	3.238901	chr12	55478463	55480124	Retroposon|SVA|SVA_D	-	chr12	55434733	55479472	AC122685.1|ENST00000555146.5	-	55434733,55476548,55479388	55435131,55476601,55479472	1.000000
prostate_gland_male_adult_37_years	chr5	56498224	56498225	56498224	-	High_confidence	17	17	17	1.550371	3.292770	chr5	56497911	56499219	LTR|ERV1|LTR12C	-	chr5	56497889	56498207	STRG.41833.1	-	56497889	56498207	0.882353
prostate_gland_male_adult_37_years	chr11	124076300	124076316	124076300	+	High_confidence	6	6	16	1.459173	3.077820	chr11	124074506	124076546	LTR|ERV1|MER52D	-	chr11	124075996	124076598	STRG.86136.1	+	124075996	124076598	0.625000
prostate_gland_male_adult_37_years	chr10	27981870	27981899	27981898	-	High_confidence	13	13	30	2.735949	3.948394	chr10	27981797	27981857	LINE|L2|L2b	-	chr10	27944822	27981904	ARMC4|ENST00000480504.1	-	27944822,27961567,27968922,27971107,27981465,27981828	27944962,27961715,27969018,27971313,27981582,27981904	0.966667
prostate_gland_male_adult_37_years	chr22	25212560	25212587	25212571	+	RAMPAGE_only	19	19	53	4.833511	3.450032	chr22	25212608	25212846	LTR|ERVL|LTR16C	+	chr22	25219521	25231869	CRYBB2|ENST00000398215.2	+	25219521,25221403,25224917,25227852,25229435,25231603	25219666,25221483,25225036,25227985,25229578,25231869	0.754717
prostate_gland_male_adult_37_years	chr17	4143196	4143215	4143199	+	High_confidence	75	75	173	15.777308	5.450434	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.988439
prostate_gland_male_adult_37_years	chr19	2393149	2393150	2393149	+	High_confidence	154	156	162	14.774127	4.395518	chr19	2392567	2393567	LTR|ERV1|LTR12C	+	chr19	2393347	2393860	STRG.119244.1	+	2393347	2393860	0.938272
prostate_gland_male_adult_37_years	chr5	126600248	126600249	126600248	+	High_confidence	41	44	45	4.103924	4.325925	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	0.977778
prostate_gland_male_adult_37_years	chr1	230272070	230272110	230272109	-	RAMPAGE_only	3	3	10	0.911983	2.846439	chr1	230271314	230272176	LTR|ERVL|MER21C	-	chr1	230258693	230268483	AL136988.2|ENST00000440729.1	-	230258693,230259477,230268302	230259087,230259763,230268483	0.600000
prostate_gland_male_adult_37_years	chr8	116648828	116648865	116648864	-	RAMPAGE_only	10	10	24	2.188760	2.952102	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.916667
prostate_gland_male_adult_37_years	chr14	87734295	87734298	87734297	-	High_confidence	36	44	56	5.107106	3.545165	chr14	87733892	87735317	LTR|ERV1|LTR12C	-	chr14	87725954	87734298	AL359237.1|ENST00000556168.1	-	87725954,87733867	87726010,87734298	0.928571
prostate_gland_male_adult_37_years	chr5	140700445	140700452	140700445	+	High_confidence	279	356	645	58.822912	4.889200	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.987597
prostate_gland_male_adult_54_years	chr9	117466030	117466077	117466030	-	High_confidence	64	72	140	11.236983	6.204533	chr9	117466000	117466092	LINE|L2|L2c	+	chr9	117430450	117466248	STRG.40967.2	-	117430450,117449057,117453802	117437754,117449177,117466248	0.878571
prostate_gland_male_adult_54_years	chr7	87040212	87040223	87040222	-	RAMPAGE_only	15	15	52	4.173737	4.950064	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.500000
prostate_gland_male_adult_54_years	chr3	108165449	108165466	108165465	-	RAMPAGE_only	7	7	12	0.963170	3.459432	chr3	108165378	108165542	DNA|hAT-Ac|OldhAT1	+	chr3	108160811	108222570	IFT57|NM_018010.3	-	108160811,108163662,108165430,108166853,108167792,108191520,108206627,108213930,108218534,108219409,108222110	108162655,108163729,108165493,108166985,108167864,108191643,108206696,108214021,108218653,108219572,108222570	0.916667
prostate_gland_male_adult_54_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	15	15	15	1.203962	3.323231	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
prostate_gland_male_adult_54_years	chr2	192749826	192749832	192749831	+	High_confidence	22	22	38	3.050038	4.495907	chr2	192749752	192749877	DNA|hAT-Charlie|MER119	-	chr2	192749844	192776068	STRG.11840.2	+	192749844,192750788,192753723,192775580	192750028,192750872,192753845,192776068	0.526316
prostate_gland_male_adult_54_years	chr1	21875650	21875658	21875657	-	RAMPAGE_only	7	7	15	1.203962	3.664498	chr1	21875470	21875616	SINE|MIR|MIRb	-	chr1	21822231	21937297	HSPG2|NM_005529.6	-	21822231,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174,21937154	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896310,21937297	0.733333
prostate_gland_male_adult_54_years	chr17	75742730	75742749	75742748	+	High_confidence	5	5	12	0.963170	3.095795	chr17	75742779	75742995	SINE|MIR|MIRb	+	chr17	75742423	75749045	ITGB4|ENST00000584025.1	+	75742423,75743712,75746263,75748840	75742761,75743861,75746375,75749045	0.750000
prostate_gland_male_adult_54_years	chr3	132273504	132273552	132273504	-	RAMPAGE_only	11	11	32	2.568453	4.687500	chr3	132273471	132273816	LINE|L2|L2a	+	chr3	132235502	132260919	STRG.17104.9	-	132235502,132259783	132244336,132260919	0.593750
prostate_gland_male_adult_54_years	chr14	37606676	37606709	37606676	+	RAMPAGE_only	2	2	6	0.481585	2.584963	chr14	37606287	37606711	LTR|ERVL|LTR33	+	chr14	37611250	38041442	TTC6|ENST00000533625.5	+	37611250,37622049,37680150,37682757,37696694,37701331,37714654,37724897,37735920,37737659,37738775,37874459,37916497,37926178,37927857,37936233,37939409,37968444,38041257	37611361,37623003,37680261,37682964,37696835,37701526,37714796,37725002,37736010,37737734,37739155,37874563,37916554,37926307,37927974,37936403,37939559,37968588,38041442	1.000000
prostate_gland_male_adult_54_years	chr2	185425017	185425076	185425017	+	High_confidence	6	8	45	3.611887	4.463749	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185425010	185504589	STRG.11408.1	+	185425010,185434096,185483033,185502662,185504063	185425507,185434187,185483091,185502724,185504589	0.822222
prostate_gland_male_adult_54_years	chr8	11795578	11795579	11795578	+	High_confidence	312	313	346	27.771401	5.468220	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.985549
prostate_gland_male_adult_54_years	chr4	79827470	79827502	79827494	+	High_confidence	80	81	216	17.337060	6.387447	chr4	79827343	79827787	LTR|ERVL-MaLR|MLT1D	+	chr4	79827470	79863247	PCAT4|NR_026555.1	+	79827470,79861289	79827603,79863247	0.615741
prostate_gland_male_adult_54_years	chr13	36846144	36846169	36846168	-	RAMPAGE_only	9	9	15	1.203962	3.235926	chr13	36845952	36846122	SINE|Alu|FRAM	-	chr13	36844830	36879829	SMAD9|ENST00000399275.6	-	36844830,36853418,36865536,36867272,36872657,36879277	36848819,36853675,36865758,36867383,36872915,36879829	0.800000
prostate_gland_male_adult_54_years	chr19	11507459	11507469	11507468	-	High_confidence	4	4	8	0.642113	2.521641	chr19	11507282	11507445	SINE|Alu|FRAM	-	chr19	11506074	11507709	ECSIT|ENST00000585898.1	-	11506074,11507456	11506428,11507709	0.875000
prostate_gland_male_adult_54_years	chr7	38305214	38305273	38305214	-	High_confidence	3	3	19	1.525019	4.142664	chr7	38305199	38305558	LTR|Gypsy|LTR81B	-	chr7	38302750	38305359	STRG.31569.3	-	38302750,38304663	38304172,38305359	0.894737
prostate_gland_male_adult_54_years	chr3	132320728	132320805	132320728	-	RAMPAGE_only	5	5	26	2.086868	3.013661	chr3	132320652	132320949	SINE|Alu|AluSx	-	chr3	132291402	132291684	STRG.17104.13	-	132291402	132291684	0.884615
prostate_gland_male_adult_54_years	chr11	119046591	119046643	119046591	-	RAMPAGE_only	9	9	46	3.692152	3.721881	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.978261
prostate_gland_male_adult_54_years	chrX	125445689	125445710	125445689	-	High_confidence	2	2	7	0.561849	2.584963	chrX	125444291	125450734	LINE|L1|L1PA10	+	chrX	125443036	125445688	STRG.77037.1	-	125443036	125445688	0.857143
prostate_gland_male_adult_54_years	chr16	4669251	4669252	4669251	+	High_confidence	7	7	7	0.561849	2.807355	chr16	4669151	4669448	SINE|Alu|AluSz	+	chr16	4669120	4681580	MGRN1|ENST00000591673.1	+	4669120,4671390,4673497,4677462,4680031,4681549	4669252,4671459,4673657,4677572,4680097,4681580	1.000000
prostate_gland_male_adult_54_years	chr5	55535738	55535776	55535738	-	High_confidence	4	4	12	0.963170	2.855389	chr5	55535460	55535905	LTR|ERV1|MER31B	+	chr5	55424841	55535078	PLPP1|NR_103485.1	-	55424841,55425862,55441850,55467868,55475298,55490959,55534571	55425334,55426039,55441908,55468149,55475450,55491114,55535078	0.916667
prostate_gland_male_adult_54_years	chr7	7566514	7566534	7566514	-	High_confidence	6	7	25	2.006604	4.213661	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.880000
prostate_gland_male_adult_54_years	chr12	107864543	107864564	107864563	-	High_confidence	8	9	21	1.685547	3.684184	chr12	107864193	107865394	LTR|ERV1|LTR12D	+	chr12	107839349	107864562	AC126177.4|ENST00000551629.2	-	107839349,107845400,107845962,107864441	107839366,107845587,107846117,107864562	0.809524
prostate_gland_male_adult_54_years	chr1	156176479	156176480	156176479	+	RAMPAGE_only	11	11	13	1.043434	2.855389	chr1	156176464	156176549	LINE|L2|L2	+	chr1	156154370	156177752	SEMA4A|ENST00000368282.1	+	156154370,156156413,156158069,156158387,156158718,156160442,156160904,156161345,156162943,156172825,156174821,156175085,156175555,156176404	156154717,156156574,156158132,156158486,156158824,156160559,156161029,156161518,156163094,156173006,156174940,156175243,156175656,156177752	0.923077
prostate_gland_male_adult_54_years	chr11	65382789	65382796	65382789	-	High_confidence	9	11	21	1.685547	3.084184	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375191	65382674	SLC25A45|NM_182556.3	-	65375191,65376817,65379375,65379866,65380131,65381914,65382485	65376675,65377076,65379561,65379938,65380175,65381969,65382674	0.571429
prostate_gland_male_adult_54_years	chr19	35115804	35115851	35115816	+	High_confidence	11	11	27	2.167132	4.310443	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.814815
prostate_gland_male_adult_54_years	chr9	39809852	39809870	39809852	-	High_confidence	5	5	17	1.364491	3.410417	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.588235
prostate_gland_male_adult_54_years	chr1	32768074	32768079	32768074	+	RAMPAGE_only	4	5	10	0.802642	3.321928	chr1	32768079	32768253	SINE|MIR|MIR3	+	chr1	32765666	32774970	KIAA1522|ENST00000373480.1	+	32765666,32767786,32768061,32768651,32769672,32769879,32772864	32765827,32767957,32768117,32768775,32769786,32772441,32774970	0.900000
prostate_gland_male_adult_54_years	chrX	63441916	63441917	63441916	-	RAMPAGE_only	8	8	10	0.802642	2.646439	chrX	63441592	63442156	LINE|L1|L1PA13	+	chrX	63426559	63431612	LINC01278|ENST00000608623.1	-	63426559	63431612	1.000000
prostate_gland_male_adult_54_years	chr10	102509274	102509282	102509274	+	RAMPAGE_only	4	4	8	0.642113	2.750000	chr10	102509211	102509300	LINE|CR1|L3	-	chr10	102504078	102618659	SUFU|ENST00000423559.2	+	102504078,102509168,102549969,102592581,102593635,102593992,102597139,102599432,102615267,102617289	102504334,102509303,102550106,102592724,102593721,102594065,102597293,102599544,102615402,102618659	1.000000
prostate_gland_male_adult_54_years	chr19	48596854	48596901	48596900	+	RAMPAGE_only	7	7	23	1.846076	3.795089	chr19	48596922	48597093	SINE|MIR|MIR	+	chr19	48595785	48599423	SULT2B1|ENST00000597923.1	+	48595785,48599134	48596919,48599423	1.000000
prostate_gland_male_adult_54_years	chr3	135965670	135965745	135965723	+	High_confidence	13	18	84	6.742190	5.534709	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.976190
prostate_gland_male_adult_54_years	chr11	64807587	64807613	64807612	-	RAMPAGE_only	8	8	17	1.364491	3.734522	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64804333	64810132	MEN1|ENST00000377313.5	-	64804333,64805033,64805634,64806231,64807010,64807178,64807551,64807890,64809649	64804816,64805198,64805770,64806368,64807098,64807219,64807680,64808099,64810132	0.941176
prostate_gland_male_adult_54_years	chr14	81192675	81192717	81192681	-	RAMPAGE_only	4	4	17	1.364491	3.250000	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.941176
prostate_gland_male_adult_54_years	chr9	117449085	117449086	117449085	-	RAMPAGE_only	6	6	8	0.642113	2.500000	chr9	117448871	117449366	LTR|ERVL|LTR79	-	chr9	117430450	117466248	STRG.40967.2	-	117430450,117449057,117453802	117437754,117449177,117466248	0.750000
prostate_gland_male_adult_54_years	chrX	44225768	44225803	44225802	-	High_confidence	3	3	10	0.802642	2.521928	chrX	44225702	44225811	SINE|MIR|MIR3	-	chrX	44176341	44225775	STRG.75165.1	-	44176341,44178366,44225684	44176384,44178564,44225775	0.900000
prostate_gland_male_adult_54_years	chr17	49646471	49646510	49646509	-	High_confidence	7	7	24	1.926340	3.788755	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.625000
prostate_gland_male_adult_54_years	chr15	44414010	44414017	44414010	+	RAMPAGE_only	4	4	9	0.722377	2.750000	chr15	44413807	44414135	SINE|Alu|AluSq2	-	chr15	44288759	44415757	CASC4|ENST00000345795.6	+	44288759,44322964,44328684,44331987,44337762,44338236,44379689,44380805,44413335	44289356,44323019,44328787,44332078,44337907,44338317,44379788,44380976,44415757	0.888889
prostate_gland_male_adult_54_years	chr6	57394719	57394730	57394719	+	High_confidence	171	173	249	19.985777	6.148929	chr6	57392680	57397716	LINE|L1|L1PB1	-	chr6	57394726	57646849	STRG.28393.3	+	57394726,57402128,57507386,57532410,57537439,57601092,57606374,57632132,57645927	57394826,57402268,57507454,57532483,57537625,57601219,57606457,57632201,57646849	0.755020
prostate_gland_male_adult_54_years	chr1	174874418	174874439	174874427	+	High_confidence	3	4	12	0.963170	3.095795	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874457	174958182	RABGAP1L|ENST00000478442.5	+	174874457,174877391,174957456,174957890	174874506,174877605,174957549,174958182	0.916667
prostate_gland_male_adult_54_years	chr15	24919672	24919689	24919688	+	High_confidence	18	18	48	3.852680	4.925523	chr15	24919446	24919852	LTR|ERV1|MER31A	-	chr15	24919682	24978539	STRG.56381.2	+	24919682,24920010,24962113,24967931,24974310,24975357,24976304,24976876,24977777,24978192,24978406	24919812,24920124,24962209,24968082,24974456,24975509,24976416,24977029,24977916,24978318,24978539	0.875000
prostate_gland_male_adult_54_years	chr15	24919749	24919795	24919749	+	High_confidence	21	22	38	3.050038	4.859641	chr15	24919446	24919852	LTR|ERV1|MER31A	-	chr15	24919682	24978539	STRG.56381.2	+	24919682,24920010,24962113,24967931,24974310,24975357,24976304,24976876,24977777,24978192,24978406	24919812,24920124,24962209,24968082,24974456,24975509,24976416,24977029,24977916,24978318,24978539	0.921053
prostate_gland_male_adult_54_years	chr2	3473035	3473045	3473044	+	High_confidence	6	6	19	1.525019	3.787144	chr2	3472789	3473098	LTR|ERV1|MER31B	-	chr2	3472420	3479567	TRAPPC12|ENST00000469400.1	+	3472420,3477694,3478845,3479218	3472602,3477795,3478933,3479567	0.631579
prostate_gland_male_adult_54_years	chrX	125445602	125445645	125445602	-	High_confidence	11	11	21	1.685547	3.427333	chrX	125444291	125450734	LINE|L1|L1PA10	+	chrX	125443036	125445688	STRG.77037.1	-	125443036	125445688	0.571429
prostate_gland_male_adult_54_years	chr11	61488893	61488920	61488904	+	High_confidence	4	4	13	1.043434	3.026987	chr11	61488729	61489022	LINE|L2|L2b	-	chr11	61488841	61490931	PPP1R32|ENST00000366212.8	+	61488841,61489781,61490500,61490813	61488962,61489946,61490584,61490931	0.923077
prostate_gland_male_adult_54_years	chr3	132259946	132259947	132259946	-	High_confidence	11	11	12	0.963170	3.095795	chr3	132259704	132260165	LTR|ERVL|LTR33	+	chr3	132235502	132260919	STRG.17104.9	-	132235502,132259783	132244336,132260919	0.666667
prostate_gland_male_adult_54_years	chr12	52116402	52116414	52116407	-	RAMPAGE_only	9	10	29	2.327661	3.049193	chr12	52116006	52118404	LTR|ERV1|HERVE-int	-	chr12	52100749	52118152	STRG.50019.4	-	52100749,52104158,52108068,52116026	52101397,52106001,52108209,52118152	0.862069
prostate_gland_male_adult_54_years	chr9	121313981	121314021	121314020	+	RAMPAGE_only	10	10	40	3.210567	3.831687	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
prostate_gland_male_adult_54_years	chr4	75127193	75127252	75127224	-	High_confidence	70	92	487	39.088649	6.084204	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75082018	75127269	STRG.20193.1	-	75082018,75084588,75103846,75121924,75127065	75082357,75084703,75103926,75122019,75127269	0.930185
prostate_gland_male_adult_54_years	chr5	177924903	177924910	177924903	+	RAMPAGE_only	10	10	16	1.284227	3.589898	chr5	177924848	177925150	LINE|L2|L2b	+	chr5	177950334	177957750	AC106795.2|ENST00000502514.5	+	177950334,177951716,177957608	177950565,177951956,177957750	0.500000
prostate_gland_male_adult_54_years	chr15	57516620	57516634	57516620	+	RAMPAGE_only	2	2	7	0.561849	2.521641	chr15	57516656	57516717	SINE|MIR|MIR	+	chr15	57437978	57550727	STRG.57860.7	+	57437978,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547351	57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.857143
prostate_gland_male_adult_54_years	chr5	164973288	164973312	164973288	+	High_confidence	7	8	15	1.203962	3.323231	chr5	164969249	164973617	LTR|ERV1|LTR25-int	-	chr5	164973285	165015468	STRG.25869.1	+	164973285,165007368,165015432	164973560,165007412,165015468	0.666667
prostate_gland_male_adult_54_years	chr4	79663704	79663760	79663754	+	High_confidence	13	13	57	4.575057	4.789149	chr4	79663745	79663900	LTR|ERVL|LTR33B	+	chr4	79663760	79696837	LINC02469|ENST00000506460.1	+	79663760,79667988,79689987,79696412	79663848,79668127,79690076,79696837	0.719298
prostate_gland_male_adult_54_years	chr15	39420950	39421009	39420950	-	High_confidence	12	12	64	5.136907	5.679583	chr15	39420570	39426588	LINE|L1|L1PA2	+	chr15	38881915	39420709	STRG.57062.1	-	38881915,38886696,38974154,39071502,39420543	38885628,38886929,38974235,39071608,39420709	0.593750
prostate_gland_male_adult_54_years	chr4	6673446	6673447	6673446	+	High_confidence	23	23	25	2.006604	3.827910	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	0.920000
prostate_gland_male_adult_54_years	chr17	28234014	28234054	28234014	-	High_confidence	25	25	184	14.768606	5.441483	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28230560	28234049	STRG.63582.1	-	28230560,28233917	28233342,28234049	0.972826
prostate_gland_male_adult_54_years	chr2	241174182	241174183	241174182	+	RAMPAGE_only	23	23	31	2.488189	4.015061	chr2	241173408	241174668	LINE|L1|L1MEc	-	chr2	241150021	241183652	PPP1R7|ENST00000234038.10	+	241150021,241153475,241157806,241158483,241159212,241160331,241163284,241166336,241169780,241182646	241150547,241153604,241157862,241158549,241159343,241160494,241163401,241166441,241169867,241183652	0.967742
prostate_gland_male_adult_54_years	chr9	133365986	133366006	133365986	-	High_confidence	7	7	17	1.364491	3.057476	chr9	133365731	133365944	DNA|TcMar-Tigger|Tigger4a	-	chr9	133363452	133366077	SURF4|ENST00000465565.1	-	133363452,133365984	133363759,133366077	0.529412
prostate_gland_male_adult_54_years	chr2	232816731	232816752	232816731	+	RAMPAGE_only	2	2	12	0.963170	3.584963	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	1.000000
prostate_gland_male_adult_54_years	chr7	99983759	99983818	99983795	-	High_confidence	5	5	27	2.167132	4.162295	chr7	99983739	99983825	SINE|MIR|MIRb	+	chr7	99966737	99983801	STRG.33378.1	-	99966737,99968154,99971745,99975944,99978405,99980171,99983732	99967286,99968430,99972006,99976135,99978491,99980257,99983801	0.814815
prostate_gland_male_adult_54_years	chr4	118265611	118265627	118265626	+	High_confidence	34	35	71	5.698756	4.515493	chr4	118265367	118266730	LTR|ERV1|LTR12C	+	chr4	118265624	118266665	STRG.21058.2	+	118265624,118266450	118265982,118266665	0.985915
prostate_gland_male_adult_54_years	chr10	122127024	122127025	122127024	+	High_confidence	97	97	113	9.069851	5.674071	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.716814
prostate_gland_male_adult_54_years	chr4	86384229	86384230	86384229	-	High_confidence	4	4	7	0.561849	2.521641	chr4	86384172	86384249	LINE|L2|L2b	-	chr4	86016074	86384229	MAPK10|ENST00000641283.1	-	86016074,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194308,86354529,86384099	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86384229	0.714286
prostate_gland_male_adult_54_years	chr14	60164502	60164534	60164502	-	High_confidence	7	7	14	1.123698	3.235926	chr14	60164401	60164543	SINE|MIR|MIRb	+	chr14	60148947	60165293	DHRS7|ENST00000554101.5	-	60148947,60150064,60152938,60153958,60155999,60165176	60149568,60150187,60153178,60154065,60156152,60165293	1.000000
prostate_gland_male_adult_54_years	chr18	7946878	7946898	7946878	+	High_confidence	8	8	18	1.444755	3.572431	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.777778
prostate_gland_male_adult_54_years	chr7	107745115	107745121	107745115	+	High_confidence	18	18	41	3.290831	4.403056	chr7	107745109	107745182	LINE|L2|L2b	-	chr7	107745133	107758571	STRG.33718.5	+	107745133,107748879,107753410,107753894,107755417,107758142	107745395,107749047,107753511,107753978,107755491,107758571	0.902439
prostate_gland_male_adult_54_years	chr8	11864408	11864411	11864408	-	RAMPAGE_only	3	3	8	0.642113	2.521641	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.500000
prostate_gland_male_adult_54_years	chr11	123060156	123060256	123060255	-	High_confidence	28	28	228	18.300230	5.161679	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.552632
prostate_gland_male_adult_54_years	chr3	187021850	187021852	187021851	+	High_confidence	139	245	318	25.524005	5.155827	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.971698
prostate_gland_male_adult_54_years	chr16	77200608	77200612	77200608	+	RAMPAGE_only	5	5	12	0.963170	3.418296	chr16	77200473	77200776	SINE|Alu|AluSx1	+	chr16	77190918	77202405	MON1B|ENST00000248248.7	+	77190918,77191475,77193450,77194334,77195534,77198107	77191258,77191633,77193777,77195154,77195682,77202405	0.916667
prostate_gland_male_adult_54_years	chr9	120533992	120534029	120533992	-	High_confidence	3	3	18	1.444755	3.852169	chr9	120533823	120534313	LINE|L2|L2c	+	chr9	120439370	120534000	STRG.41084.7	-	120439370,120443619,120447894,120453455,120458449,120460571,120467859,120470110,120471747,120477349,120487293,120491306,120518426,120524985,120527805,120528743,120529977,120533916	120439972,120443742,120448126,120453873,120458622,120460667,120467997,120470220,120471878,120477450,120487437,120491477,120518645,120525078,120527925,120528797,120530140,120534000	0.888889
prostate_gland_male_adult_54_years	chr5	126600248	126600249	126600248	+	High_confidence	31	31	32	2.568453	4.453881	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	0.968750
prostate_gland_male_adult_54_years	chr2	174410324	174410348	174410347	+	High_confidence	4	5	21	1.685547	3.039633	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	1.000000
prostate_gland_male_adult_54_years	chr1	43537897	43537903	43537897	+	High_confidence	2	2	7	0.561849	2.584963	chr1	43537916	43538017	LINE|L2|L2a	+	chr1	43538197	43580078	PTPRF|ENST00000372405.1	+	43538197,43545030,43553491,43553799,43569589,43578809	43538277,43545166,43553637,43553941,43569778,43580078	0.857143
prostate_gland_male_adult_54_years	chr11	44564418	44564429	44564428	+	High_confidence	4	6	8	0.642113	2.500000	chr11	44564373	44564477	SINE|MIR|MIRc	+	chr11	44564426	44615295	CD82|ENST00000526958.5	+	44564426,44587474,44594642,44600157,44605057,44605354,44615271	44564502,44587556,44594725,44600230,44605182,44605429,44615295	0.625000
prostate_gland_male_adult_54_years	chr19	13006126	13006134	13006133	+	RAMPAGE_only	7	7	15	1.203962	3.324863	chr19	13005981	13006192	LINE|L2|L2a	-	chr19	13012187	13025520	NFIX|ENST00000590027.1	+	13012187,13025020	13012266,13025520	0.600000
prostate_gland_male_adult_54_years	chr12	56171898	56171926	56171925	-	RAMPAGE_only	3	4	7	0.561849	2.521641	chr12	56171922	56171983	DNA|hAT-Ac|OldhAT1	+	chr12	56163344	56174713	STRG.50327.5	-	56163344,56164302,56164647,56165317,56168059,56169528,56169775,56170143,56171270,56171678,56172427,56172584,56173695,56174650	56163765,56164368,56164731,56165699,56168194,56169695,56169911,56170208,56171432,56171937,56172490,56172704,56173849,56174713	1.000000
prostate_gland_male_adult_54_years	chr5	70401427	70401547	70401467	+	RAMPAGE_only	7	7	56	4.494793	4.523138	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	1.000000
prostate_gland_male_adult_54_years	chr11	71745875	71745915	71745875	+	High_confidence	10	10	77	6.180341	5.162429	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.922078
prostate_gland_male_adult_54_years	chr22	15724429	15724438	15724437	+	RAMPAGE_only	13	13	34	2.728982	3.665310	chr22	15723558	15724888	LINE|L1|L1PA12	+	chr22	15697580	15769109	STRG.73026.1	+	15697580,15698661,15700077,15702685,15708019,15709781,15710867,15719659,15721285,15741299,15746629,15754387,15765225	15698566,15698768,15700215,15702756,15708090,15709826,15711034,15719778,15726372,15741435,15746899,15754453,15769109	0.970588
prostate_gland_male_adult_54_years	chr16	2610624	2610660	2610624	+	RAMPAGE_only	6	6	14	1.123698	2.610577	chr16	2610448	2610737	SINE|Alu|AluSq2	-	chr16	2603383	2630494	LOC652276|NR_015441.1	+	2603383,2610461,2613959,2628824	2603727,2611052,2614068,2630494	1.000000
prostate_gland_male_adult_54_years	chr16	13940780	13940781	13940780	+	RAMPAGE_only	14	14	16	1.284227	3.506891	chr16	13940407	13940901	LTR|ERVL|MER77	-	chr16	13937763	13948004	ERCC4|ENST00000462862.1	+	13937763,13943973,13944722,13947613	13937858,13944095,13944835,13948004	0.500000
prostate_gland_male_adult_54_years	chr14	106845858	106845883	106845858	-	High_confidence	11	11	33	2.648717	4.354852	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106807278	106846281	STRG.56297.2	-	106807278,106845802	106810746,106846281	0.757576
prostate_gland_male_adult_54_years	chr9	37426648	37426649	37426648	+	RAMPAGE_only	5	5	8	0.642113	2.521641	chr9	37426667	37426970	SINE|Alu|AluSx3	+	chr9	37427705	37436989	GRHPR|ENST00000497693.1	+	37427705,37436660	37432138,37436989	0.875000
prostate_gland_male_adult_54_years	chr17	79006212	79006213	79006212	-	High_confidence	5	5	8	0.642113	2.500000	chr17	79006186	79006505	LTR|ERVL-MaLR|MLT1D	-	chr17	78997665	79006213	CANT1|ENST00000592887.1	-	78997665,79005956	78997963,79006213	0.875000
prostate_gland_male_adult_54_years	chr10	72355126	72355176	72355145	-	High_confidence	4	4	13	1.043434	2.584963	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.923077
prostate_gland_male_adult_54_years	chr1	1505139	1505166	1505163	+	RAMPAGE_only	4	4	15	1.203962	3.189898	chr1	1504965	1505957	LTR|ERVK|LTR13	-	chr1	1503249	1509452	AL645728.2|ENST00000641974.1	+	1503249,1509204	1503661,1509452	1.000000
prostate_gland_male_adult_54_years	chr1	205662506	205662509	205662508	-	High_confidence	4	6	8	0.642113	2.521641	chr1	205662491	205662590	SINE|MIR|MIR3	+	chr1	205657850	205662668	SLC45A3|ENST00000460934.1	-	205657850,205661860,205662307	205659671,205662126,205662668	0.750000
prostate_gland_male_adult_54_years	chr13	84086738	84086746	84086745	+	RAMPAGE_only	7	7	15	1.203962	3.139572	chr13	84085604	84086932	LTR|ERV1|LTR12C	-	chr13	84140601	84606768	LINC00333|NR_046871.1	+	84140601,84238539,84242062,84562363,84562608,84562791,84606705	84140643,84238600,84242097,84562463,84562676,84563234,84606768	0.533333
prostate_gland_male_adult_54_years	chr12	107864635	107864677	107864655	-	High_confidence	3	3	14	1.123698	3.182006	chr12	107864193	107865394	LTR|ERV1|LTR12D	+	chr12	107839290	107864719	STRG.51512.4	-	107839290,107845400,107845962,107864441	107839366,107845587,107846104,107864719	1.000000
prostate_gland_male_adult_54_years	chr3	69237171	69237183	69237171	-	RAMPAGE_only	4	4	9	0.722377	2.750000	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69169989	69386073	FRMD4B|ENST00000398540.7	-	69169989,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69195230,69196254,69196899,69198697,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69385827	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195141,69195364,69196396,69197038,69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69386073	0.555556
prostate_gland_male_adult_54_years	chr3	149284778	149284779	149284778	+	High_confidence	49	50	53	4.254001	4.549011	chr3	149283837	149285090	LTR|ERV1|LTR12C	+	chr3	149284781	149333653	AC093001.1|ENST00000489011.1	+	149284781,149333503	149285182,149333653	0.754717
prostate_gland_male_adult_54_years	chr5	134612587	134612614	134612613	-	High_confidence	20	20	48	3.852680	4.385754	chr5	134612457	134612672	SINE|Alu|AluSz6	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.812500
prostate_gland_male_adult_54_years	chr7	90154183	90154206	90154183	+	High_confidence	37	41	95	7.625096	5.306097	chr7	90154032	90154206	DNA|hAT-Charlie|MER5A	+	chr7	90154374	90164827	STEAP1|ENST00000297205.6	+	90154374,90159757,90160804,90161913,90164476	90154543,90159872,90161317,90162078,90164827	0.968421
prostate_gland_male_adult_54_years	chr15	57451517	57451587	57451564	+	RAMPAGE_only	8	8	34	2.728982	3.976450	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57437978	57550727	STRG.57860.7	+	57437978,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547351	57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
prostate_gland_male_adult_54_years	chr5	140700445	140700452	140700445	+	High_confidence	448	516	807	64.773181	5.051330	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.987608
prostate_gland_male_adult_54_years	chr16	2759931	2759958	2759957	+	High_confidence	3	3	6	0.481585	2.584963	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	1.000000
prostate_gland_male_adult_54_years	chr1	86993006	86993028	86993027	+	High_confidence	3	4	8	0.642113	3.000000	chr1	86992686	86993160	LTR|ERV1|MER39	-	chr1	86993008	87169204	AC093155.3|ENST00000370548.3	+	86993008,87072933,87084193,87092530,87097837,87103431,87133613,87168135	86993127,87073172,87084279,87092669,87097935,87103589,87133718,87169204	1.000000
prostate_gland_male_adult_54_years	chr15	39420676	39420771	39420770	-	High_confidence	4	6	28	2.247397	3.964153	chr15	39420570	39426588	LINE|L1|L1PA2	+	chr15	38881915	39420709	STRG.57062.1	-	38881915,38886696,38974154,39071502,39420543	38885628,38886929,38974235,39071608,39420709	0.607143
prostate_gland_male_adult_54_years	chr8	19678634	19678646	19678634	+	High_confidence	5	5	10	0.802642	2.721928	chr8	19678447	19678659	LINE|CR1|L3	+	chr8	19678571	19688934	AC090541.1|ENST00000519803.1	+	19678571,19688723	19678827,19688934	0.900000
prostate_gland_male_adult_54_years	chr1	47004182	47004183	47004182	+	High_confidence	7	9	10	0.802642	2.947703	chr1	47003946	47004346	LTR|ERV1|MER51B	+	chr1	47004239	47050754	CYP4X1|NM_001320290.1	+	47004239,47029989,47031435,47033240,47035805,47036016,47038659,47039341,47046466,47048564,47049421,47049999	47004369,47030131,47031480,47033368,47035933,47036171,47038766,47039532,47046600,47048629,47049504,47050754	0.900000
prostate_gland_male_adult_54_years	chr14	103848782	103848814	103848813	-	High_confidence	15	18	45	3.611887	4.814783	chr14	103848808	103849048	SINE|MIR|MIRb	+	chr14	103735113	103848803	STRG.56187.2	-	103735113,103736002,103737693,103738678,103738885,103739823,103741789,103742653,103744611,103746372,103749793,103752999,103754069,103757649,103778744,103784794,103797370,103848271	103735195,103736202,103737860,103738812,103739023,103740593,103742291,103742823,103744716,103746553,103749934,103753196,103754244,103757751,103778821,103784914,103797518,103848803	0.955556
prostate_gland_male_adult_54_years	chr1	209429009	209429032	209429015	+	High_confidence	6	6	22	1.765812	3.630413	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.636364
prostate_gland_male_adult_54_years	chr19	21440660	21440675	21440669	-	High_confidence	19	27	105	8.427737	5.232936	chr19	21440180	21440667	LTR|ERV1|HERV3-int	-	chr19	21433415	21440687	STRG.67990.2	-	21433415,21440414	21433978,21440687	0.961905
prostate_gland_male_adult_54_years	chr2	13537672	13537675	13537674	+	High_confidence	195	383	403	32.346459	6.191155	chr2	13537716	13538096	LTR|ERVL-MaLR|THE1D	+	chr2	13537672	13609168	AC073062.1|ENST00000434509.1	+	13537672,13609055	13538014,13609168	0.684864
prostate_gland_male_adult_54_years	chr1	155058717	155058785	155058761	+	High_confidence	7	7	27	2.167132	4.532665	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	1.000000
prostate_gland_male_adult_54_years	chr4	8436023	8436024	8436023	-	RAMPAGE_only	8	9	12	0.963170	3.095795	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.500000
prostate_gland_male_adult_54_years	chr5	43066006	43066052	43066051	+	High_confidence	6	6	36	2.889510	4.614369	chr5	43065879	43066122	SINE|Alu|AluSx3	+	chr5	43065797	43072181	STRG.22995.4	+	43065797,43071140	43068217,43072181	1.000000
prostate_gland_male_adult_54_years	chr8	69356969	69356973	69356969	+	High_confidence	3	3	8	0.642113	2.750000	chr8	69351385	69357434	LINE|L1|L1PA3	-	chr8	69357021	69358680	STRG.36235.1	+	69357021,69358547	69357437,69358680	0.875000
prostate_gland_male_adult_54_years	chr7	90216231	90216277	90216231	+	High_confidence	3	3	18	1.444755	3.572469	chr7	90216155	90216275	DNA|hAT-Charlie|MER5A1	+	chr7	90215273	90227033	STEAP2|ENST00000482369.1	+	90215273,90225049,90226970	90216603,90225574,90227033	0.944444
prostate_gland_male_adult_54_years	chr2	240022172	240022216	240022172	-	RAMPAGE_only	13	13	47	3.772416	3.501611	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.978723
prostate_gland_male_adult_54_years	chr1	1892643	1892663	1892660	-	RAMPAGE_only	2	2	8	0.642113	2.521641	chr1	1892469	1892852	LINE|L1|L1MC4a	-	chr1	1785284	1891117	GNB1|ENST00000615252.4	-	1785284,1787321,1789052,1790394,1793244,1804418,1806474,1825396,1839189,1890819	1787053,1787437,1789269,1790596,1793311,1804581,1806538,1825499,1839238,1891117	0.500000
prostate_gland_male_adult_54_years	chr14	65594341	65594343	65594341	+	RAMPAGE_only	2	4	6	0.481585	2.584963	chr14	65594100	65595106	LTR|ERV1|LTR28B	-	chr14	65413068	65742936	STRG.55043.2	+	65413068,65455620,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65413214,65455718,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65742936	1.000000
prostate_gland_male_adult_54_years	chr2	130428509	130428524	130428519	-	High_confidence	10	10	33	2.648717	4.430313	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046259.1	-	130416749,130419070,130425090,130425913,130427703	130418298,130419245,130425158,130426038,130428546	0.969697
prostate_gland_male_adult_54_years	chr11	43352117	43352118	43352117	-	RAMPAGE_only	15	15	15	1.203962	3.640224	chr11	43346101	43352118	LINE|L1|L1PA2	-	chr11	43328747	43359296	AC087276.2|ENST00000526220.1	-	43328747,43332040,43335258,43359220	43329338,43332086,43335332,43359296	0.600000
prostate_gland_male_adult_54_years	chr20	24930628	24930660	24930639	+	High_confidence	136	143	622	49.924311	6.013548	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930635	24932983	STRG.70910.1	+	24930635,24931346	24930774,24932983	0.996785
prostate_gland_male_adult_54_years	chr18	46087030	46087053	46087030	-	High_confidence	3	3	17	1.364491	3.250000	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.588235
prostate_gland_male_adult_54_years	chr2	231072279	231072317	231072279	+	RAMPAGE_only	3	3	9	0.722377	2.750000	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.777778
prostate_gland_male_adult_54_years	chr16	3129632	3129669	3129663	-	RAMPAGE_only	3	3	14	1.123698	3.700440	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3128832	3132042	ZNF213-AS1|ENST00000573447.1	-	3128832,3131746	3129653,3132042	0.714286
prostate_gland_male_adult_54_years	chr10	73751182	73751230	73751229	+	RAMPAGE_only	6	6	20	1.605283	3.884184	chr10	73751278	73751548	SINE|Alu|AluSx	+	chr10	73744399	73771235	SEC24C|ENST00000635550.1	+	73744399,73746804,73759621,73760017,73760712,73762097,73763489,73763855,73765450,73765799,73766085,73766349,73766759,73767053,73767836,73768809,73769006,73769346,73769614,73769835,73770279,73770708,73770954	73744437,73747004,73759794,73760386,73760849,73762166,73763601,73763983,73765589,73765915,73766210,73766541,73766853,73767170,73768007,73768906,73769152,73769485,73769733,73770015,73770471,73770798,73771235	1.000000
prostate_gland_male_adult_54_years	chr2	195659737	195659738	195659737	+	RAMPAGE_only	90	90	95	7.625096	5.065915	chr2	195659592	195659755	SINE|MIR|MIRb	+	chr2	195657448	195680433	SLC39A10|ENST00000418005.1	+	195657448,195680031	195657609,195680433	0.800000
prostate_gland_male_adult_54_years	chr17	59892716	59892741	59892716	-	High_confidence	5	5	16	1.284227	3.625000	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.812500
prostate_gland_male_adult_54_years	chr11	71999615	71999642	71999641	+	High_confidence	3	3	10	0.802642	3.121928	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	1.000000
prostate_gland_male_adult_54_years	chr5	128082264	128082276	128082264	-	High_confidence	10	10	21	1.685547	3.787144	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	128024026	128082960	LINC01184|ENST00000508878.5	-	128024026,128061143,128076946,128081972,128082734	128024298,128061244,128077093,128082194,128082960	0.523810
prostate_gland_male_adult_54_years	chr8	143281669	143281687	143281686	-	High_confidence	72	83	226	18.139701	5.535931	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.743363
prostate_gland_male_adult_54_years	chr7	43881927	43881938	43881927	-	High_confidence	2	2	7	0.561849	2.584963	chr7	43881785	43881943	LINE|L2|L2	+	chr7	43878943	43881896	URGCP|ENST00000467410.1	-	43878943,43881658	43879260,43881896	0.571429
prostate_gland_male_adult_54_years	chr2	169717361	169717368	169717361	-	High_confidence	5	6	11	0.882906	2.913977	chr2	169717195	169717593	LTR|ERVL|LTR18B	-	chr2	169714297	169717375	STRG.11078.1	-	169714297,169716908	169716402,169717375	1.000000
prostate_gland_male_adult_54_years	chr20	46399506	46399507	46399506	-	RAMPAGE_only	8	8	9	0.722377	2.500000	chr20	46399325	46399711	LINE|L2|L2c	+	chr20	46367359	46394482	ELMO2|ENST00000352077.6	-	46367359,46368890,46370442,46371351,46371578,46371805,46373398,46374331,46374535,46375235,46375667,46380252,46383415,46386123,46387337,46389038,46393092,46393528,46394048,46394404	46367560,46368968,46370525,46371459,46371691,46371969,46373535,46374440,46374640,46375370,46375790,46380303,46383494,46386275,46387431,46389220,46393143,46393601,46394089,46394482	0.888889
prostate_gland_male_adult_54_years	chr1	1505692	1505693	1505692	+	RAMPAGE_only	8	8	11	0.882906	2.521928	chr1	1504965	1505957	LTR|ERVK|LTR13	-	chr1	1503249	1509452	AL645728.2|ENST00000641974.1	+	1503249,1509204	1503661,1509452	0.909091
prostate_gland_male_adult_54_years	chr6	109250785	109250851	109250805	+	RAMPAGE_only	10	10	53	4.254001	4.316713	chr6	109245218	109251251	LINE|L1|L1PA2	-	chr6	109254440	109267852	STRG.29233.1	+	109254440,109255370,109257545,109261888,109264800,109267807	109254648,109255492,109257774,109262091,109264956,109267852	0.830189
prostate_gland_male_adult_54_years	chr13	51576956	51576980	51576979	+	RAMPAGE_only	2	3	7	0.561849	2.807355	chr13	51576916	51577173	LINE|L2|L2a	-	chr13	51584347	51762035	WDFY2|NM_052950.3	+	51584347,51660595,51675169,51703595,51719197,51727677,51739048,51751309,51755357,51756331,51758191,51759739	51584824,51660663,51675243,51703650,51719348,51727790,51739175,51751415,51755459,51756462,51758300,51762035	0.571429
prostate_gland_male_adult_54_years	chr3	69199270	69199271	69199270	-	High_confidence	7	8	8	0.642113	2.807355	chr3	69198988	69199279	SINE|Alu|AluY	+	chr3	69196895	69199270	FRMD4B|ENST00000489817.1	-	69196895,69198697,69198985	69197038,69198774,69199270	0.625000
prostate_gland_male_adult_54_years	chrX	24151402	24151403	24151402	+	High_confidence	16	16	24	1.926340	3.882045	chrX	24151340	24151459	LINE|L2|L2b	-	chrX	24151425	24172914	ZFX|ENST00000480195.1	+	24151425,24152719,24172714	24151481,24152830,24172914	0.500000
prostate_gland_male_adult_54_years	chr2	238300061	238300109	238300064	-	High_confidence	13	13	63	5.056642	5.185624	chr2	238299957	238300152	LTR|ERVL|ERV3-16A3_I-int	+	chr2	238295391	238300620	AC012485.2|ENST00000437372.2	-	238295391,238298639,238299801,238300511	238295740,238298776,238300188,238300620	0.507937
prostate_gland_male_adult_54_years	chr11	121237339	121237354	121237353	+	High_confidence	19	23	41	3.290831	4.765731	chr11	121236927	121237620	LTR|ERVK|HERVK14-int	+	chr11	121237326	121247438	STRG.48110.1	+	121237326,121244758,121245121,121246685	121237469,121244963,121245239,121247438	0.707317
prostate_gland_male_adult_54_years	chr16	63618044	63618046	63618045	-	High_confidence	206	289	313	25.122684	6.765366	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63302421	63618046	STRG.61469.6	-	63302421,63334599,63531224,63617692	63305420,63334667,63531304,63618046	0.690096
prostate_gland_male_adult_54_years	chr20	8600695	8600726	8600707	+	High_confidence	19	19	77	6.180341	4.836973	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.857143
prostate_gland_male_adult_54_years	chr4	55036550	55036551	55036550	-	High_confidence	13	14	14	1.123698	2.815072	chr4	55036340	55036789	LTR|ERVL|LTR16A1	-	chr4	55036285	55036500	STRG.19876.1	-	55036285	55036500	0.500000
prostate_gland_male_adult_54_years	chr5	171400153	171400175	171400153	+	RAMPAGE_only	4	6	19	1.525019	4.169925	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171387850	171407125	NPM1|ENST00000393820.2	+	171387850,171390050,171391304,171391705,171392709,171392913,171400152,171400838,171405301,171406396	171388006,171390130,171391424,171391799,171392816,171392978,171400210,171400925,171405403,171407125	0.526316
prostate_gland_male_adult_54_years	chr3	112279438	112279457	112279451	+	High_confidence	15	22	46	3.692152	4.819985	chr3	112279444	112279588	LINE|L2|L2b	-	chr3	112279480	112307796	STRG.16080.1	+	112279480,112302540,112306913	112279520,112302714,112307796	0.565217
prostate_gland_male_adult_54_years	chr6	56785867	56785868	56785867	-	High_confidence	89	93	114	9.150115	4.571515	chr6	56779724	56785868	LINE|L1|L1PA3	-	chr6	56670674	56785879	DST|ENST00000522538.5	-	56670674,56699652,56701887,56704279,56735227,56785770	56670807,56699745,56701965,56704369,56735289,56785879	0.947368
prostate_gland_male_adult_54_years	chr16	2205823	2205851	2205850	+	High_confidence	3	3	13	1.043434	3.418296	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.923077
prostate_gland_male_adult_54_years	chr18	55892992	55893051	55892992	+	High_confidence	3	3	11	0.882906	3.095795	chr18	55887412	55893439	LINE|L1|L1PA3	-	chr18	55893037	56023462	AC009271.1|ENST00000589440.1	+	55893037,56017727,56023401	55893442,56017779,56023462	0.818182
prostate_gland_male_adult_54_years	chr2	113184962	113185038	113184962	+	High_confidence	10	10	48	3.852680	4.309561	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	1.000000
prostate_gland_male_adult_54_years	chr17	82076525	82076526	82076525	-	RAMPAGE_only	9	9	9	0.722377	2.641604	chr17	82076254	82076887	LINE|L1|L1MEc	-	chr17	81511345	81523847	ACTG1|ENST00000575994.5	-	81511345,81511902,81512231,81523641	81511626,81512142,81512360,81523847	1.000000
prostate_gland_male_adult_54_years	chr6	26127701	26127710	26127709	+	RAMPAGE_only	4	4	12	0.963170	2.792481	chr6	26127720	26128012	SINE|Alu|AluSx1	+	chr6	26124202	26139084	HIST1H2AC|ENST00000602637.1	+	26124202,26138053	26124633,26139084	0.916667
prostate_gland_male_adult_54_years	chr15	71781347	71781400	71781399	+	RAMPAGE_only	2	3	11	0.882906	3.321928	chr15	71781091	71781809	LINE|CR1|L3	+	chr15	71547281	71783279	THSD4|ENST00000261862.7	+	71547281,71660529,71780541,71780547	71547481,71660726,71780545,71783279	0.909091
prostate_gland_male_adult_54_years	chr6	75891304	75891305	75891304	+	RAMPAGE_only	4	4	7	0.561849	2.807355	chr6	75891350	75891661	SINE|Alu|AluY	+	chr6	75890209	75908560	MYO6|ENST00000430435.1	+	75890209,75891227,75892529,75894813,75895230,75907604,75908495	75890265,75891306,75892690,75894840,75895260,75907708,75908560	1.000000
prostate_gland_male_adult_54_years	chr1	21833832	21833899	21833832	-	High_confidence	2	2	18	1.444755	3.616875	chr1	21833729	21833783	LINE|L2|L2c	-	chr1	21829992	21833577	HSPG2|ENST00000635682.1	-	21829992,21830981,21831214,21831462,21831651,21832494,21832874,21833267,21833466	21830091,21831090,21831324,21831562,21831796,21832606,21832892,21833384,21833577	0.888889
prostate_gland_male_adult_54_years	chr4	142601100	142601122	142601121	-	High_confidence	18	22	74	5.939548	5.293266	chr4	142597986	142601688	LINE|L1|L1PA11	+	chr4	142085776	142601111	STRG.21507.3	-	142085776,142108092,142112541,142122127,142123291,142124587,142145839,142160357,142173631,142193086,142208424,142208895,142237863,142260491,142270662,142305457,142314711,142402937,142405205,142429172,142431168,142462662,142467956,142601059	142086256,142108190,142112682,142122245,142123415,142124760,142145996,142160561,142173809,142193195,142208529,142209026,142238011,142260564,142270774,142305537,142314762,142403054,142405324,142429217,142431385,142462726,142468055,142601111	0.945946
prostate_gland_male_adult_54_years	chr4	1241328	1241362	1241328	-	RAMPAGE_only	4	4	12	0.963170	2.913977	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1248740	CTBP1|ENST00000513420.1	-	1225437,1228198,1238182,1241324,1248660	1225566,1228343,1238337,1241519,1248740	0.583333
prostate_gland_male_adult_54_years	chr4	82020015	82020017	82020015	-	RAMPAGE_only	3	5	7	0.561849	2.807355	chr4	82019561	82022377	LINE|L1|L1PA3	+	chr4	81087369	81215117	PRKG2|NM_006259.2	-	81087369,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81167160,81169662,81171690,81174792,81204586,81214935	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81167224,81169768,81171804,81174959,81205060,81215117	1.000000
prostate_gland_male_adult_54_years	chr9	129858067	129858068	129858067	+	RAMPAGE_only	4	4	7	0.561849	2.807355	chr9	129858116	129858180	SINE|MIR|MIRb	+	chr9	129835477	129881828	USP20|ENST00000358355.5	+	129835477,129849812,129852539,129856306,129858049,129858466,129860936,129861542,129863185,129865302,129868004,129868861,129869309,129869671,129870452,129873481,129873698,129874575,129874828,129875309,129875559,129876129,129878337,129879572,129880112,129880466	129835597,129849924,129852636,129856360,129858112,129858598,129861033,129861612,129863299,129865381,129868449,129869002,129869425,129869844,129870547,129873515,129873744,129874756,129874955,129875479,129875641,129876238,129878440,129879644,129880289,129881828	0.857143
prostate_gland_male_adult_54_years	chr2	8572053	8572057	8572056	-	RAMPAGE_only	7	7	14	1.123698	3.392747	chr2	8572000	8572112	LINE|L2|L2b	+	chr2	8570330	8576955	LINC01814|ENST00000436187.1	-	8570330,8576910	8570581,8576955	0.500000
prostate_gland_male_adult_54_years	chr6	31587007	31587014	31587009	+	High_confidence	4	7	10	0.802642	2.641604	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.900000
prostate_gland_male_adult_54_years	chr1	41450254	41450291	41450257	+	High_confidence	4	4	27	2.167132	4.032303	chr1	41450238	41450336	SINE|MIR|MIR3	+	chr1	41449991	41464902	STRG.1462.2	+	41449991,41461084,41464538	41450367,41461348,41464902	0.814815
prostate_gland_male_adult_54_years	chr19	20358162	20358163	20358162	+	High_confidence	295	312	322	25.845061	6.070748	chr19	20357990	20358269	LTR|ERVL|LTR66	+	chr19	20358169	20371779	STRG.68196.2	+	20358169,20369156	20358333,20371779	0.888199
prostate_gland_male_adult_54_years	chr5	117800426	117800432	117800426	-	RAMPAGE_only	3	4	10	0.802642	2.721928	chr5	117800284	117802209	LINE|L1|L1PA16	+	chr5	117776595	117776942	STRG.24503.1	-	117776595	117776942	1.000000
prostate_gland_male_adult_54_years	chr8	53564173	53564206	53564193	-	RAMPAGE_only	2	2	8	0.642113	2.500000	chr8	53561477	53564468	LINE|L1|L1PREC2	+	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.500000
prostate_gland_male_adult_54_years	chr5	139011485	139011486	139011485	-	RAMPAGE_only	7	7	7	0.561849	2.521641	chr5	139005423	139011486	LINE|L1|L1PA2	-	chr5	138946994	138953433	SIL1|ENST00000515008.1	-	138946994,138951170,138951787,138953331	138947473,138951335,138951884,138953433	0.857143
prostate_gland_male_adult_54_years	chr12	54946286	54946299	54946291	-	RAMPAGE_only	8	9	25	2.006604	3.753270	chr12	54945422	54947976	LTR|ERV1|HERVH-int	-	chr12	54911422	54948065	STRG.50247.2	-	54911422,54921444,54922214,54936870,54938563,54942154,54946115,54947830	54920910,54921486,54922282,54936958,54938599,54942310,54946308,54948065	0.560000
prostate_gland_male_adult_54_years	chr12	10363706	10363707	10363706	+	High_confidence	9	9	10	0.802642	2.725481	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.800000
prostate_gland_male_adult_54_years	chr19	20750350	20750382	20750367	-	High_confidence	7	13	51	4.093472	4.435296	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746920	20750367	STRG.67907.2	-	20746920,20749986	20749661,20750367	0.843137
prostate_gland_male_adult_54_years	chr12	54947902	54947917	54947902	-	High_confidence	4	5	14	1.123698	3.093069	chr12	54945422	54947976	LTR|ERV1|HERVH-int	-	chr12	54911422	54948065	STRG.50247.2	-	54911422,54921444,54922214,54936870,54938563,54942154,54946115,54947830	54920910,54921486,54922282,54936958,54938599,54942310,54946308,54948065	0.857143
prostate_gland_male_adult_54_years	chr14	91646232	91646235	91646234	-	High_confidence	12	19	19	1.525019	4.037401	chr14	91640244	91646233	LINE|L1|L1PA2	-	chr14	91635523	91646235	CATSPERB|ENST00000556901.1	-	91635523,91639095,91646136	91636579,91639250,91646235	0.894737
prostate_gland_male_adult_54_years	chr11	57794021	57794034	57794021	+	RAMPAGE_only	3	3	9	0.722377	2.500000	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.666667
prostate_gland_male_adult_54_years	chr16	20399758	20399769	20399768	-	High_confidence	3	6	10	0.802642	3.169925	chr16	20399655	20399818	LINE|CR1|L3	-	chr16	20396111	20399308	STRG.60711.1	-	20396111,20399098	20396648,20399308	0.500000
prostate_gland_male_adult_54_years	chr20	56367491	56367492	56367491	+	RAMPAGE_only	10	10	12	0.963170	2.732159	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	0.916667
prostate_gland_male_adult_54_years	chr6	168887800	168887801	168887800	+	RAMPAGE_only	6	6	9	0.722377	2.750000	chr6	168887692	168887832	DNA|hAT-Tip100|ORSL-2b	-	chr6	168889046	168889334	STRG.30507.1	+	168889046	168889334	0.777778
prostate_gland_male_adult_54_years	chr6	127330853	127330860	127330853	-	High_confidence	5	5	10	0.802642	2.725481	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.600000
prostate_gland_male_adult_54_years	chr4	101197571	101197572	101197571	-	RAMPAGE_only	6	6	8	0.642113	2.500000	chr4	101197421	101197618	SINE|MIR|MIRb	+	chr4	101083194	101195928	PPP3CA|ENST00000492351.6	-	101083194,101093775,101098366,101099610,101108073,101108953,101171083,101195915	101083263,101093915,101098512,101099722,101108161,101109078,101171226,101195928	0.500000
prostate_gland_male_adult_54_years	chr11	62600216	62600242	62600241	-	High_confidence	5	5	10	0.802642	2.641604	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.900000
prostate_gland_male_adult_54_years	chr22	49925453	49925454	49925453	+	RAMPAGE_only	8	11	11	0.882906	2.550341	chr22	49925493	49925572	LINE|CR1|L3b	+	chr22	49923209	49927528	CRELD2|ENST00000487969.1	+	49923209,49927254	49925557,49927528	1.000000
prostate_gland_male_adult_54_years	chr3	37058855	37058907	37058906	-	RAMPAGE_only	7	8	33	2.648717	4.051822	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.939394
prostate_gland_male_adult_54_years	chr6	167480799	167480824	167480823	+	RAMPAGE_only	6	8	21	1.685547	3.177566	chr6	167480787	167481074	LTR|ERV1|MER41B	-	chr6	167482011	167485385	STRG.30438.1	+	167482011,167485118	167482274,167485385	0.904762
prostate_gland_male_adult_54_years	chr7	107580245	107580267	107580264	+	High_confidence	420	422	2185	175.377201	6.489884	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.972540
prostate_gland_male_adult_54_years	chr1	1721622	1721637	1721636	-	High_confidence	6	6	17	1.364491	3.969816	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.647059
prostate_gland_male_adult_54_years	chr7	38305324	38305388	38305341	-	High_confidence	28	28	282	22.634495	6.864784	chr7	38305199	38305558	LTR|Gypsy|LTR81B	-	chr7	38302750	38305359	STRG.31569.3	-	38302750,38304663	38304172,38305359	0.907801
prostate_gland_male_adult_54_years	chr8	26395611	26395612	26395611	+	High_confidence	18	19	21	1.685547	4.021928	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.761905
prostate_gland_male_adult_54_years	chr11	72758533	72758584	72758550	-	High_confidence	17	17	51	4.093472	3.985142	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72759309	STARD10|ENST00000537351.5	-	72754728,72755121,72755700,72757766,72758529,72759233	72754782,72755142,72755753,72757884,72758633,72759309	0.764706
prostate_gland_male_adult_54_years	chr19	34860633	34860701	34860700	-	High_confidence	8	8	41	3.290831	4.293943	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.560976
prostate_gland_male_adult_54_years	chr8	53523567	53523631	53523598	-	High_confidence	2	3	18	1.444755	3.381580	chr8	53523216	53523628	LTR|ERV1|HERVE_a-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.944444
prostate_gland_male_adult_54_years	chr1	19344388	19344429	19344388	-	RAMPAGE_only	55	56	127	10.193549	5.761328	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.992126
prostate_gland_male_adult_54_years	chr16	63617832	63617852	63617851	-	High_confidence	7	9	23	1.846076	4.186704	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63302421	63618046	STRG.61469.6	-	63302421,63334599,63531224,63617692	63305420,63334667,63531304,63618046	0.565217
prostate_gland_male_adult_54_years	chr18	63702302	63702309	63702302	+	High_confidence	10	13	25	2.006604	4.418296	chr18	63702310	63702603	SINE|Alu|AluSg	+	chr18	63702303	63723893	SERPINB11|NM_080475.3	+	63702303,63702850,63710178,63711334,63712564,63716034,63720012,63720830,63722994	63702377,63703006,63710361,63711394,63712693,63716152,63720155,63720986,63723893	0.720000
prostate_gland_male_adult_54_years	chr11	7906253	7906289	7906253	-	High_confidence	29	31	60	4.815850	4.768495	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7882839	7906254	STRG.45278.1	-	7882839,7905602	7882933,7906254	0.800000
prostate_gland_male_adult_54_years	chr12	79095786	79095843	79095792	-	High_confidence	60	61	269	21.591060	5.398680	chr12	79095543	79095753	LTR|ERV1|LTR49-int	-	chr12	79090452	79095856	STRG.50909.2	-	79090452,79092398,79095685	79092153,79092499,79095856	0.762082
prostate_gland_male_adult_54_years	chr3	197299282	197299317	197299316	-	High_confidence	9	9	21	1.685547	3.984184	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.904762
prostate_gland_male_adult_54_years	chr7	130915874	130915922	130915921	+	RAMPAGE_only	5	6	13	1.043434	3.392747	chr7	130915903	130916038	SINE|MIR|MIRc	+	chr7	130936463	130939661	AC058791.1|ENST00000608412.1	+	130936463	130939661	0.615385
prostate_gland_male_adult_54_years	chr12	16608090	16608126	16608125	-	High_confidence	2	2	7	0.561849	2.807355	chr12	16608118	16608177	LTR|ERV1|MER4-int	+	chr12	16548419	16608135	LMO3|ENST00000441439.6	-	16548419,16560412,16600654,16606065,16607935	16551327,16560538,16600868,16606132,16608135	1.000000
prostate_gland_male_adult_54_years	chr19	34860575	34860576	34860575	-	High_confidence	13	13	19	1.525019	3.836592	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.684211
prostate_gland_male_adult_54_years	chrX	82747565	82747572	82747571	-	RAMPAGE_only	16	16	29	2.327661	4.106377	chrX	82747314	82747602	LTR|ERV1|MER4B-int	-	chrX	82697574	82765983	STRG.76312.1	-	82697574,82741443,82747467,82765489	82699210,82741593,82747624,82765983	0.724138
prostate_gland_male_adult_54_years	chr20	3795759	3795789	3795763	+	High_confidence	4	4	28	2.247397	3.782122	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.964286
prostate_gland_male_adult_54_years	chr1	23417917	23417991	23417917	-	RAMPAGE_only	33	33	154	12.360681	5.515509	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.980519
prostate_gland_male_adult_54_years	chrX	7147287	7147288	7147287	+	High_confidence	19	19	22	1.765812	4.095795	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147275	7354634	STRG.74727.2	+	7147275,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7148083,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354634	0.954545
prostate_gland_male_adult_54_years	chr19	10555125	10555126	10555125	-	RAMPAGE_only	22	22	25	2.006604	3.483074	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	1.000000
prostate_gland_male_adult_54_years	chr21	41480792	41480799	41480798	-	RAMPAGE_only	3	3	9	0.722377	2.500000	chr21	41480630	41480937	SINE|Alu|AluSx1	-	chr21	41466008	41507982	TMPRSS2|ENST00000458356.5	-	41466008,41467733,41468395,41470647,41471805,41473324,41476576,41479171,41480475,41488393,41489506,41494355,41498118,41507949	41466153,41467886,41468538,41470743,41471981,41473496,41476620,41479282,41480602,41488513,41489593,41494578,41498189,41507982	0.666667
prostate_gland_male_adult_54_years	chr1	6820197	6820223	6820197	+	High_confidence	2	2	7	0.561849	2.521641	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6819293	6886387	STRG.293.2	+	6819293,6820180,6825091,6871756,6886239	6819470,6820250,6825210,6871840,6886387	0.857143
prostate_gland_male_adult_54_years	chr14	77736987	77736988	77736987	-	High_confidence	8	8	11	0.882906	2.646439	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.909091
prostate_gland_male_adult_54_years	chr15	71546887	71546973	71546887	+	High_confidence	31	44	82	6.581662	5.743350	chr15	71546806	71547005	SINE|MIR|MIR3	-	chr15	71547201	71783383	THSD4|NM_001286429.1	+	71547201,71660529,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71771063,71777231	71547481,71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71771208,71783383	0.768293
prostate_gland_male_adult_54_years	chr3	50230995	50230996	50230995	+	High_confidence	7	7	7	0.561849	2.521641	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	1.000000
prostate_gland_male_adult_54_years	chr3	139344537	139344548	139344537	+	High_confidence	2	3	6	0.481585	2.584963	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	1.000000
prostate_gland_male_adult_54_years	chr4	28117460	28117510	28117460	+	High_confidence	18	21	46	3.692152	4.603716	chr4	28116374	28117705	LTR|ERV1|LTR12C	-	chr4	28117032	28288645	STRG.19538.2	+	28117032,28215068,28287812	28117716,28215148,28288645	0.543478
prostate_gland_male_adult_54_years	chr7	101217578	101217599	101217578	-	High_confidence	4	4	11	0.882906	2.913977	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
prostate_gland_male_adult_54_years	chr7	154928480	154928504	154928503	+	High_confidence	38	40	84	6.742190	5.581139	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.928571
prostate_gland_male_adult_54_years	chr4	94760568	94760586	94760568	+	High_confidence	3	3	9	0.722377	2.725481	chr4	94760505	94760823	LINE|L2|L2b	+	chr4	94759681	95158441	STRG.20716.3	+	94759681,94875830,94996039,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547	94759789,94875900,94996134,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95158441	0.777778
prostate_gland_male_adult_54_years	chr1	174849250	174849251	174849250	-	High_confidence	37	37	46	3.692152	4.368979	chr1	174843226	174849243	LINE|L1|L1PA2	-	chr1	174848105	174849238	STRG.5161.1	-	174848105	174849238	0.978261
prostate_gland_male_adult_54_years	chr10	46076511	46076512	46076511	-	RAMPAGE_only	7	7	7	0.561849	2.521641	chr10	46076223	46076517	SINE|Alu|AluSq2	-	chr10	46033304	46046269	MSMB|NM_002443.3	-	46033304,46038965,46039985,46046234	46033551,46039071,46040091,46046269	1.000000
prostate_gland_male_adult_54_years	chr11	58578102	58578156	58578102	-	High_confidence	5	5	23	1.846076	4.088779	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.565217
prostate_gland_male_adult_54_years	chr4	75939742	75939743	75939742	-	High_confidence	8	8	8	0.642113	2.500000	chr4	75939414	75939714	SINE|Alu|AluSx3	-	chr4	75919341	75940260	NAAA|ENST00000505594.1	-	75919341,75920737,75920950,75925734,75931213,75936108,75940000	75919975,75920800,75921123,75925811,75931304,75936235,75940260	1.000000
prostate_gland_male_adult_54_years	chr2	47369431	47369432	47369431	+	High_confidence	9	9	11	0.882906	2.732159	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369474	47375254	EPCAM|ENST00000474691.1	+	47369474,47373462,47375233	47369581,47374048,47375254	0.727273
prostate_gland_male_adult_54_years	chr12	9065161	9065181	9065180	+	High_confidence	4	4	18	1.444755	3.350209	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.611111
prostate_gland_male_adult_54_years	chr9	20658312	20658349	20658346	+	High_confidence	25	25	112	8.989587	4.657532	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.767857
prostate_gland_male_adult_54_years	chr15	79897454	79897467	79897454	-	High_confidence	13	13	21	1.685547	3.784184	chr15	79897435	79897625	DNA|TcMar-Tigger|Tigger3c	-	chr15	79844975	79897379	MTHFS|ENST00000559722.2	-	79844975,79889092,79897160	79845442,79889354,79897379	0.952381
prostate_gland_male_adult_54_years	chr20	50131139	50131162	50131139	-	High_confidence	18	18	40	3.210567	4.875146	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.950000
prostate_gland_male_adult_54_years	chr19	35899339	35899345	35899344	-	High_confidence	4	4	9	0.722377	2.641604	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35887951	35899737	NFKBID|NM_001321831.1	-	35887951,35889889,35890373,35895979,35896217,35896391,35896725,35896912,35897650,35898471,35898718,35899706	35888612,35890054,35890490,35896128,35896269,35896538,35896831,35897103,35897838,35898532,35898822,35899737	0.888889
prostate_gland_male_adult_54_years	chr19	45823822	45823823	45823822	-	High_confidence	8	8	11	0.882906	2.921928	chr19	45823777	45823871	LINE|RTE-BovB|MamRTE1	-	chr19	45816482	45824012	SYMPK|ENST00000598329.2	-	45816482,45816797,45817958,45821383,45822755,45823371,45823766	45816577,45816974,45818146,45821485,45822846,45823472,45824012	0.545455
prostate_gland_male_adult_54_years	chr11	58927693	58927738	58927709	+	High_confidence	14	14	55	4.414529	4.603698	chr11	58927656	58928383	LTR|ERVK|HERVK22-int	-	chr11	58927700	58956405	GLYATL1|ENST00000317391.8	+	58927700,58942539,58943542,58947045,58947857,58954769,58955175,58955609	58927829,58942584,58943666,58947165,58947965,58954896,58955353,58956405	0.963636
prostate_gland_male_adult_54_years	chr13	52570323	52570324	52570323	+	RAMPAGE_only	11	12	14	1.123698	3.085055	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.928571
prostate_gland_male_adult_54_years	chr18	59053465	59053480	59053479	-	High_confidence	9	10	16	1.284227	3.625000	chr18	59053374	59053551	LINE|L1|L1ME4c	-	chr18	59050722	59053313	STRG.66692.2	-	59050722,59052523,59053070	59051885,59052749,59053313	1.000000
prostate_gland_male_adult_54_years	chr15	64326659	64326660	64326659	+	High_confidence	11	12	12	0.963170	2.845351	chr15	64326660	64332685	LINE|L1|L1PA2	+	chr15	64326680	64327511	STRG.58440.1	+	64326680	64327511	0.750000
prostate_gland_male_adult_54_years	chr2	13537757	13537774	13537757	+	High_confidence	5	5	11	0.882906	2.646439	chr2	13537716	13538096	LTR|ERVL-MaLR|THE1D	+	chr2	13537677	13909667	STRG.7261.2	+	13537677,13609055,13837689,13892266,13908235	13538013,13609161,13837956,13892347,13909667	0.727273
prostate_gland_male_adult_54_years	chr8	116648828	116648875	116648828	-	RAMPAGE_only	7	7	45	3.611887	4.594466	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.933333
prostate_gland_male_adult_54_years	chr19	34860606	34860607	34860606	-	High_confidence	5	6	7	0.561849	2.521641	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.571429
prostate_gland_male_adult_54_years	chr13	44405928	44405973	44405969	-	High_confidence	25	25	51	4.093472	4.782977	chr13	44405967	44406087	SINE|MIR|MIRc	+	chr13	44401289	44405977	STRG.53016.1	-	44401289,44404391,44405613	44403329,44404611,44405977	0.647059
prostate_gland_male_adult_54_years	chr19	20423697	20423704	20423703	-	RAMPAGE_only	8	10	16	1.284227	2.780639	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.812500
prostate_gland_male_adult_54_years	chr11	61588344	61588384	61588344	-	RAMPAGE_only	18	18	78	6.260605	5.390858	chr11	61588272	61588409	SINE|MIR|MIRb	-	chr11	61515312	61582323	STRG.46318.4	-	61515312,61523074,61523826,61524362,61527914,61532988,61546030,61547176,61551383,61556103,61582205	61518731,61523274,61523941,61524532,61528185,61533124,61546255,61547308,61551463,61556207,61582323	0.756410
prostate_gland_male_adult_54_years	chr8	53523862	53523964	53523862	-	High_confidence	52	52	280	22.473966	6.732798	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53511554	53523931	STRG.35984.1	-	53511554,53521018,53523328	53516954,53521379,53523931	0.960714
prostate_gland_male_adult_54_years	chr15	45513701	45513713	45513703	+	High_confidence	7	11	22	1.765812	3.522572	chr15	45513473	45513967	LINE|L1|L1M4	+	chr15	45513256	45519664	STRG.57574.8	+	45513256,45515772,45518587	45513963,45515892,45519664	0.681818
prostate_gland_male_adult_54_years	chr3	132317181	132317207	132317181	+	High_confidence	10	11	20	1.605283	3.536887	chr3	132317183	132317270	SINE|MIR|MIR3	+	chr3	132317366	132358752	ACPP|ENST00000336375.9	+	132317366,132328266,132331646,132332191,132337455,132342551,132344926,132349919,132352719,132356685	132317576,132328362,132331733,132332344,132337554,132342644,132345059,132350002,132352823,132358752	0.950000
prostate_gland_male_adult_54_years	chr8	11795625	11795674	11795667	+	High_confidence	15	15	38	3.050038	4.609384	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795594	11830275	STRG.35226.2	+	11795594,11802257,11802758,11808793,11809666,11821749,11826023,11830243	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830275	1.000000
prostate_gland_male_adult_54_years	chr9	107455264	107455320	107455319	-	High_confidence	11	11	24	1.926340	3.938722	chr9	107455042	107455350	SINE|Alu|AluSc	+	chr9	107444504	107455489	STRG.40680.2	-	107444504,107446479,107448377,107454811,107455439	107445331,107446568,107448461,107454973,107455489	0.750000
prostate_gland_male_adult_54_years	chr16	19393734	19393735	19393734	-	RAMPAGE_only	31	31	39	3.130302	4.378992	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19343646	19401693	AC130456.2|ENST00000563613.1	-	19343646,19367810,19393375,19395982,19401439	19344823,19367877,19393547,19396249,19401693	0.512821
prostate_gland_male_adult_54_years	chrY	12686572	12686590	12686572	+	RAMPAGE_only	6	7	11	0.882906	2.663533	chrY	12685409	12686624	LTR|ERV1|MER4-int	+	chrY	12701230	12860839	USP9Y|ENST00000338981.7	+	12701230,12708633,12709387,12720588,12722107,12725112,12726574,12735611,12735997,12736410,12738156,12739524,12757191,12758505,12760483,12771067,12773582,12775470,12776648,12778018,12778605,12779525,12786202,12786521,12790406,12791498,12793031,12810178,12810671,12811634,12812829,12816123,12818419,12833687,12837910,12839863,12841009,12842239,12843063,12846332,12846932,12847238,12856339,12856632,12857565,12859278	12702055,12708693,12709543,12720737,12722187,12725225,12726793,12735727,12736249,12736549,12738309,12739629,12757398,12758642,12760617,12771155,12773925,12775566,12776860,12778259,12778755,12779646,12786333,12786800,12790532,12791624,12793201,12810287,12810818,12811781,12813052,12816344,12818610,12833861,12838052,12840614,12841133,12842465,12843193,12846518,12847153,12847327,12856496,12856845,12857661,12860839	0.818182
prostate_gland_male_adult_54_years	chr19	16720128	16720191	16720172	+	High_confidence	3	3	19	1.525019	3.127987	chr19	16720170	16720480	LINE|L2|L2a	-	chr19	16719979	16732652	STRG.67888.7	+	16719979,16721397,16724365,16731191,16732617	16720293,16721617,16724463,16731278,16732652	0.947368
prostate_gland_male_adult_54_years	chr12	54947979	54948082	54947979	-	High_confidence	155	155	599	48.078235	7.448560	chr12	54945422	54947976	LTR|ERV1|HERVH-int	-	chr12	54911422	54948065	STRG.50247.2	-	54911422,54921444,54922214,54936870,54938563,54942154,54946115,54947830	54920910,54921486,54922282,54936958,54938599,54942310,54946308,54948065	0.697830
prostate_gland_male_adult_54_years	chr6	79631438	79631464	79631446	+	High_confidence	3	3	12	0.963170	2.663533	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.916667
prostate_gland_male_adult_54_years	chr11	307580	307581	307580	-	RAMPAGE_only	8	8	8	0.642113	2.750000	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	1.000000
prostate_gland_male_adult_54_years	chr22	38168076	38168112	38168092	-	High_confidence	9	9	32	2.568453	4.098069	chr22	38167963	38168270	LINE|L2|L2b	+	chr22	38143236	38168090	PLA2G6|ENST00000452972.1	-	38143236,38144895,38145437,38167917	38143288,38144978,38145653,38168090	0.812500
prostate_gland_male_adult_54_years	chr16	84780904	84780905	84780904	+	High_confidence	24	24	24	1.926340	4.001629	chr16	84780594	84780980	LTR|ERV1|LTR12F	+	chr16	84780923	84789304	STRG.62253.1	+	84780923,84785217,84785411,84788864	84781966,84785315,84785487,84789304	1.000000
prostate_gland_male_adult_54_years	chr9	129495803	129495818	129495817	+	RAMPAGE_only	6	6	16	1.284227	3.625000	chr9	129495725	129495901	SINE|MIR|MIRc	-	chr9	129490818	129503622	LINC00963|ENST00000454635.6	+	129490818,129493418,129502396,129503322	129491128,129493595,129502519,129503622	0.500000
prostate_gland_male_adult_54_years	chr15	75347042	75347082	75347042	+	High_confidence	8	8	34	2.728982	4.558051	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.647059
prostate_gland_male_adult_54_years	chr2	96303166	96303200	96303166	-	RAMPAGE_only	6	6	23	1.846076	4.011365	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.913043
prostate_gland_male_adult_54_years	chr3	132298986	132298987	132298986	+	RAMPAGE_only	20	20	20	1.605283	3.403702	chr3	132298183	132302714	LTR|ERV1|Harlequin-int	-	chr3	132317366	132358752	ACPP|ENST00000336375.9	+	132317366,132328266,132331646,132332191,132337455,132342551,132344926,132349919,132352719,132356685	132317576,132328362,132331733,132332344,132337554,132342644,132345059,132350002,132352823,132358752	1.000000
prostate_gland_male_adult_54_years	chr19	15900304	15900305	15900304	+	High_confidence	809	815	895	71.836428	5.386428	chr19	15899614	15900620	LTR|ERV1|LTR12C	+	chr19	15900310	15907234	STRG.67847.4	+	15900310,15902272	15901663,15907234	0.991061
prostate_gland_male_adult_54_years	chr19	48868595	48868631	48868613	-	High_confidence	45	55	205	16.454154	6.370242	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837182	48868603	STRG.69345.3	-	48837182,48838016,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868603	1.000000
prostate_gland_male_adult_54_years	chr15	80059915	80059926	80059918	+	High_confidence	17	19	58	4.655322	4.765152	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	1.000000
prostate_gland_male_adult_54_years	chr1	33021412	33021455	33021416	-	High_confidence	15	16	50	4.013208	4.324520	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010518	33021690	STRG.1200.5	-	33010518,33014521,33021366,33021592	33013402,33014594,33021461,33021690	0.980000
prostate_gland_male_adult_54_years	chr1	1721704	1721708	1721707	-	High_confidence	5	6	11	0.882906	3.121928	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.909091
prostate_gland_male_adult_54_years	chr16	72627692	72627740	72627692	-	High_confidence	9	9	36	2.889510	4.516876	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72479750	72627686	LINC01572|ENST00000563770.5	-	72479750,72491903,72523331,72540577,72555264,72570434,72617182,72627534	72479790,72491966,72523415,72540611,72555326,72570515,72617234,72627686	0.583333
prostate_gland_male_adult_54_years	chr1	51403428	51403433	51403428	-	RAMPAGE_only	2	2	7	0.561849	2.807355	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.857143
prostate_gland_male_adult_54_years	chr5	117455261	117455262	117455261	+	High_confidence	5	5	7	0.561849	2.807355	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	1.000000
prostate_gland_male_adult_54_years	chr10	65570509	65570536	65570519	+	High_confidence	5	8	22	1.765812	4.095795	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.636364
prostate_gland_male_adult_54_years	chr12	12927723	12927741	12927733	+	High_confidence	18	20	53	4.254001	5.576977	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.622642
prostate_gland_male_adult_54_years	chr3	132259862	132259869	132259862	-	RAMPAGE_only	25	27	55	4.414529	5.208455	chr3	132259704	132260165	LTR|ERVL|LTR33	+	chr3	132235502	132260919	STRG.17104.9	-	132235502,132259783	132244336,132260919	0.854545
prostate_gland_male_adult_54_years	chr16	4355592	4355593	4355592	-	High_confidence	44	44	44	3.531623	3.989635	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.931818
prostate_gland_male_adult_54_years	chr20	37344683	37344718	37344695	+	High_confidence	11	20	56	4.494793	5.039149	chr20	37344715	37344779	SINE|MIR|MIRc	+	chr20	37344699	37405183	STRG.71211.2	+	37344699,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405183	0.535714
prostate_gland_male_adult_54_years	chr12	643625	643648	643625	-	High_confidence	5	6	17	1.364491	3.202820	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.705882
prostate_gland_male_adult_54_years	chr14	106845802	106845817	106845816	+	High_confidence	5	5	16	1.284227	3.006239	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106845765	106864618	STRG.56294.1	+	106845765,106864196	106845913,106864618	0.687500
prostate_gland_male_adult_54_years	chr2	166185017	166185037	166185031	+	RAMPAGE_only	14	16	43	3.451359	4.451608	chr2	166184665	166185205	LINE|L2|L2a	-	chr2	166149180	166294588	AC010127.1|ENST00000630020.2	+	166149180,166171386,166199638,166248194,166249342,166251833,166277087,166294564	166149572,166171558,166199818,166248276,166249384,166251912,166277247,166294588	0.813953
prostate_gland_male_adult_54_years	chr7	38318984	38318985	38318984	-	High_confidence	9	9	13	1.043434	3.251629	chr7	38318855	38319140	LINE|L2|L2c	+	chr7	38317016	38318861	TRGV9|ENST00000444775.2	-	38317016,38317446	38317336,38318861	0.538462
prostate_gland_male_adult_54_years	chr13	93455166	93455185	93455174	+	High_confidence	3	3	13	1.043434	2.623517	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93455034	94404588	STRG.53538.2	+	93455034,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93455438,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94404588	0.923077
prostate_gland_male_adult_54_years	chr14	102083179	102083294	102083189	-	RAMPAGE_only	27	27	216	17.337060	6.408912	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.990741
prostate_gland_male_adult_54_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	14	14	16	1.284227	3.500000	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.625000
prostate_gland_male_adult_54_years	chr3	132259991	132260034	132260010	-	High_confidence	31	32	86	6.902718	5.828402	chr3	132259704	132260165	LTR|ERVL|LTR33	+	chr3	132235502	132260919	STRG.17104.9	-	132235502,132259783	132244336,132260919	0.779070
prostate_gland_male_adult_54_years	chr9	95876317	95876341	95876317	-	High_confidence	3	3	13	1.043434	2.807390	chr9	95876250	95876455	SINE|MIR|MIR	+	chr9	95811041	95876244	STRG.40395.2	-	95811041,95812219,95874979	95812086,95813922,95876244	1.000000
prostate_gland_male_adult_54_years	chr2	61958309	61958315	61958314	+	RAMPAGE_only	5	5	9	0.722377	2.750000	chr2	61958256	61958566	SINE|Alu|AluSq	-	chr2	61905646	62136247	COMMD1|ENST00000311832.5	+	61905646,62000700,62135830	61905858,62000982,62136247	0.555556
prostate_gland_male_adult_54_years	chr3	128335779	128335799	128335798	+	RAMPAGE_only	5	5	19	1.525019	3.794653	chr3	128335147	128336032	LINE|L2|L2a	-	chr3	128336903	128341788	EEFSEC|ENST00000483569.1	+	128336903,128341232	128337092,128341788	0.894737
prostate_gland_male_adult_54_years	chr16	15006404	15006453	15006404	+	RAMPAGE_only	3	3	21	1.685547	3.363287	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.904762
prostate_gland_male_adult_54_years	chr3	33130024	33130048	33130037	+	RAMPAGE_only	3	3	10	0.802642	2.921928	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	1.000000
prostate_gland_male_adult_54_years	chr6	2961984	2962023	2962022	-	High_confidence	7	7	18	1.444755	3.794653	chr6	2961899	2962022	SINE|Alu|AluJr	-	chr6	2948158	2962108	SERPINB6|ENST00000380524.5	-	2948158,2948913,2953043,2954591,2955523,2959167,2961893	2948699,2949069,2953186,2954709,2955670,2959342,2962108	0.944444
prostate_gland_male_adult_54_years	chr2	218287266	218287280	218287279	-	High_confidence	7	7	14	1.123698	3.235926	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.928571
prostate_gland_male_adult_54_years	chr18	46087118	46087119	46087118	-	High_confidence	11	11	16	1.284227	3.452820	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.937500
prostate_gland_male_adult_54_years	chr2	73072193	73072215	73072193	-	High_confidence	8	8	19	1.525019	3.681881	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.842105
prostate_gland_male_adult_54_years	chr3	8611957	8611974	8611957	-	RAMPAGE_only	3	3	6	0.481585	2.584963	chr3	8611524	8617535	LINE|L1|L1PA3	+	chr3	8573612	8603351	STRG.13472.5	-	8573612,8603243	8573874,8603351	0.833333
prostate_gland_male_adult_54_years	chr16	61918702	61918724	61918708	-	High_confidence	3	3	12	0.963170	3.095795	chr16	61918303	61919817	LINE|L1|L1HS	+	chr16	61901391	61918714	CDH8|ENST00000577228.1	-	61901391,61918257	61901473,61918714	0.750000
prostate_gland_male_adult_54_years	chr8	142344379	142344380	142344379	-	RAMPAGE_only	11	11	12	0.963170	2.663533	chr8	142344146	142344350	DNA|DNA|UCON8	-	chr8	142212166	142354763	TSNARE1|ENST00000520166.5	-	142212166,142229472,142274780,142284412,142300485,142314383,142315002,142318543,142330900,142331753,142343965,142345742,142354636	142212313,142229579,142274863,142284485,142300647,142314440,142315092,142318634,142330970,142331831,142344472,142345892,142354763	0.916667
prostate_gland_male_adult_54_years	chr17	6853928	6853934	6853928	+	High_confidence	12	12	27	2.167132	4.310443	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6895102	ALOX12P2|ENST00000576636.6	+	6853929,6854213,6892002,6894883,6895095	6854060,6854453,6892075,6895006,6895102	0.703704
prostate_gland_male_adult_54_years	chr1	209429204	209429272	209429260	+	High_confidence	11	11	53	4.254001	4.234312	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.924528
prostate_gland_male_adult_54_years	chr11	123061200	123061322	123061321	-	High_confidence	31	32	230	18.460758	5.448637	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.978261
prostate_gland_male_adult_54_years	chr6	169654698	169654737	169654698	-	RAMPAGE_only	3	3	10	0.802642	3.121928	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169558320	169667275	WDR27|ENST00000546525.5	-	169558320,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197,169651929,169658275,169659085,169659450,169660662,169662303,169663562,169664165,169665485,169667135	169559927,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649275,169652008,169658358,169659207,169659518,169660766,169662424,169663649,169664286,169665556,169667275	0.500000
prostate_gland_male_adult_54_years	chr22	23527431	23527476	23527454	+	High_confidence	15	15	83	6.661926	5.330249	chr22	23527401	23527785	LINE|L2|L2b	-	chr22	23527458	23542765	STRG.73319.1	+	23527458,23536971,23538760	23527564,23537136,23542765	0.759036
prostate_gland_male_adult_54_years	chr1	45522778	45522779	45522778	-	High_confidence	6	6	6	0.481585	2.584963	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	1.000000
prostate_gland_male_adult_54_years	chr17	60887025	60887084	60887025	+	High_confidence	12	13	84	6.742190	5.740781	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	1.000000
prostate_gland_male_adult_54_years	chr1	46181636	46181644	46181643	+	RAMPAGE_only	5	6	9	0.722377	2.503258	chr1	46181615	46181833	LINE|L2|L2b	-	chr1	46180389	46196520	STRG.1793.2	+	46180389,46181099,46184190,46184593,46184784,46184959,46185224,46196201	46180658,46181164,46184397,46184668,46184883,46185115,46185308,46196520	0.666667
prostate_gland_male_adult_54_years	chr12	53464783	53464834	53464828	+	RAMPAGE_only	2	2	10	0.802642	2.947703	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.800000
prostate_gland_male_adult_54_years	chr19	47751037	47751103	47751102	+	High_confidence	4	5	27	2.167132	3.856196	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47750177	47757005	NOP53|ENST00000595143.5	+	47750177,47750907,47751519,47752511,47754526,47754708,47755783,47756527,47756687,47756998	47750286,47751107,47751590,47752607,47754631,47754757,47755822,47756604,47756744,47757005	0.777778
prostate_gland_male_adult_54_years	chr12	91179462	91179549	91179525	-	High_confidence	86	143	536	43.021593	6.903906	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91175117	91179533	DCN|ENST00000551354.1	-	91175117,91178341,91179361	91177625,91178585,91179533	0.546642
prostate_gland_male_adult_54_years	chr5	156972318	156972339	156972334	-	RAMPAGE_only	4	5	14	1.123698	3.180833	chr5	156972200	156972374	LTR|ERVL-MaLR|MLT1M	-	chr5	156919281	156963255	TIMD4|ENST00000274532.6	-	156919281,156920463,156922098,156926262,156948415,156949650,156951511,156954414,156963140	156919541,156920503,156922216,156926312,156948499,156949731,156951790,156954756,156963255	0.928571
prostate_gland_male_adult_54_years	chr7	99410128	99410167	99410146	+	High_confidence	3	3	11	0.882906	3.095795	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.727273
prostate_gland_male_adult_54_years	chr3	14017455	14017466	14017455	+	High_confidence	2	3	8	0.642113	2.750000	chr3	14012549	14017955	LINE|L1|L1PB1	-	chr3	14017400	14065985	TPRXL|ENST00000424053.5	+	14017400,14063378,14064024	14017665,14063508,14065985	0.625000
prostate_gland_male_adult_54_years	chr2	159428313	159428357	159428356	-	RAMPAGE_only	8	9	18	1.444755	3.969816	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.888889
prostate_gland_male_adult_54_years	chr11	67848672	67848702	67848701	-	High_confidence	15	15	55	4.414529	4.704777	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67845213	67848695	STRG.46767.1	-	67845213,67848565	67847989,67848695	0.890909
prostate_gland_male_adult_54_years	chr12	123390725	123390761	123390725	+	High_confidence	11	11	38	3.050038	4.237179	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.868421
prostate_gland_male_adult_54_years	chr17	2975621	2975665	2975660	+	RAMPAGE_only	11	15	66	5.297435	5.028073	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2853935	3037535	STRG.62678.1	+	2853935,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2854102,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037535	0.924242
prostate_gland_male_adult_54_years	chr3	132342315	132342362	132342315	+	RAMPAGE_only	4	4	13	1.043434	3.180833	chr3	132342301	132342515	DNA|hAT-Charlie|MER20	+	chr3	132337351	132352788	ACPP|ENST00000512463.1	+	132337351,132342551,132344926,132349919,132352719	132337554,132342644,132345059,132350002,132352788	0.769231
prostate_gland_male_adult_54_years	chr19	3062924	3062983	3062924	-	High_confidence	9	15	37	2.969774	4.571861	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.945946
prostate_gland_male_adult_54_years	chr1	19980415	19980440	19980415	-	High_confidence	66	70	218	17.497588	6.411028	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975437	19980416	PLA2G2A|ENST00000375111.7	-	19975437,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979690,19980416	0.944954
prostate_gland_male_adult_54_years	chr2	172228089	172228090	172228089	+	High_confidence	7	11	11	0.882906	3.459432	chr2	172228128	172228425	SINE|Alu|AluJr	+	chr2	172228025	172228507	STRG.11121.1	+	172228025	172228507	0.727273
prostate_gland_male_adult_54_years	chr1	238486028	238486036	238486028	-	High_confidence	3	4	13	1.043434	2.931209	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480440	238486023	LINC01139|ENST00000649681.1	-	238480440	238486023	0.923077
prostate_gland_male_adult_54_years	chr18	63691634	63691676	63691654	-	High_confidence	24	29	110	8.829058	5.272896	chr18	63687738	63694231	LINE|L1|L1PA10	+	chr18	63684957	63691665	STRG.66768.1	-	63684957,63691577	63686426,63691665	0.981818
prostate_gland_male_adult_54_years	chr9	96875563	96875589	96875588	-	High_confidence	7	7	23	1.846076	3.882045	chr9	96875295	96875538	SINE|MIR|MIRb	-	chr9	96844945	96875623	ZNF782|ENST00000498811.1	-	96844945,96851946,96852852,96860240,96861527,96875467	96845016,96852005,96853014,96860414,96861603,96875623	0.913043
prostate_gland_male_adult_54_years	chr12	10363964	10363974	10363964	+	High_confidence	38	38	64	5.136907	4.970010	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.781250
prostate_gland_male_adult_54_years	chr14	106846262	106846302	106846262	-	High_confidence	6	6	23	1.846076	4.055958	chr14	106845982	106849095	LINE|L1|L1PBb	-	chr14	106807278	106846281	STRG.56297.2	-	106807278,106845802	106810746,106846281	0.956522
prostate_gland_male_adult_54_years	chr8	136530755	136530792	136530776	+	High_confidence	16	16	72	5.779020	5.582916	chr8	136530234	136530974	LTR|ERV1|LTR12C	-	chr8	136530808	136984882	STRG.37599.1	+	136530808,136536977,136789834,136797273,136896984,136961739,136984837	136531006,136537059,136789889,136797370,136897078,136961851,136984882	0.527778
prostate_gland_male_adult_54_years	chr6	144564129	144564130	144564129	+	RAMPAGE_only	23	23	24	1.926340	3.740953	chr6	144564039	144564485	LINE|L2|L2a	-	chr6	144583209	144851003	UTRN|ENST00000367526.8	+	144583209,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144583600,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144851003	0.625000
prostate_gland_male_adult_54_years	chr4	158173024	158173025	158173024	-	High_confidence	30	30	30	2.407925	4.364735	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	1.000000
prostate_gland_male_adult_54_years	chr1	37502320	37502349	37502348	-	RAMPAGE_only	10	10	18	1.444755	2.947703	chr1	37502250	37502372	SINE|Alu|AluJr	-	chr1	37501414	37513520	MEAF6|ENST00000485039.1	-	37501414,37509277,37509454,37513422	37501996,37509323,37509542,37513520	0.833333
prostate_gland_male_adult_54_years	chr12	52118139	52118216	52118139	-	High_confidence	28	28	163	13.083059	6.261488	chr12	52116006	52118404	LTR|ERV1|HERVE-int	-	chr12	52087598	52118152	STRG.50019.3	-	52087598,52090504,52094678,52104158,52108068,52116026	52087705,52092555,52094852,52106001,52108209,52118152	0.987730
prostate_gland_male_adult_54_years	chr14	67857913	67857965	67857913	+	High_confidence	6	6	35	2.809246	4.054539	chr14	67857721	67858812	LTR|ERV1|LTR28	-	chr14	67857891	67887212	RAD51B|ENST00000555907.5	+	67857891,67865002,67885868,67887020	67858057,67865139,67885988,67887212	0.942857
prostate_gland_male_adult_54_years	chr16	15798662	15798665	15798664	-	RAMPAGE_only	30	57	75	6.019812	5.470245	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.866667
prostate_gland_male_adult_54_years	chr2	118143019	118143020	118143019	-	RAMPAGE_only	64	67	77	6.180341	5.165160	chr2	118137000	118143020	LINE|L1|L1PA2	-	chr2	118132127	118186386	THORLNC|ENST00000414886.5	-	118132127,118176764,118183086,118186230	118132372,118176905,118183322,118186386	0.753247
prostate_gland_male_adult_54_years	chr1	226871317	226871364	226871317	+	High_confidence	2	2	12	0.963170	2.845351	chr1	226871299	226871488	SINE|MIR|MIR3	-	chr1	226871267	226896098	PSEN2|ENST00000366782.5	+	226871267,226875364,226880468,226881887,226883704,226885537,226888090,226888828,226890034,226891277,226891742,226894006,226895423	226871404,226875550,226880724,226882048,226883919,226885679,226888158,226889049,226890133,226891361,226891844,226894125,226896098	0.916667
prostate_gland_male_adult_54_years	chr19	49086488	49086559	49086546	+	High_confidence	21	21	74	5.939548	4.822044	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49108479	STRG.69473.4	+	49086523,49090290,49090465,49098426,49098641,49101389,49102113,49103531,49104633,49107624,49107794	49086561,49090353,49090520,49098491,49098704,49101471,49103457,49103587,49104735,49107712,49108479	1.000000
prostate_gland_male_adult_54_years	chr3	33838256	33838281	33838280	+	RAMPAGE_only	4	5	15	1.203962	3.773557	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.733333
prostate_gland_male_adult_54_years	chr2	36513747	36513762	36513747	+	High_confidence	5	5	21	1.685547	3.784942	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.714286
prostate_gland_male_adult_54_years	chr1	176162925	176162963	176162962	-	RAMPAGE_only	3	3	11	0.882906	3.095795	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.636364
prostate_gland_male_adult_54_years	chr17	8062615	8062633	8062629	+	RAMPAGE_only	18	18	47	3.772416	4.841615	chr17	8062291	8063901	LTR|ERVK|HERVK-int	+	chr17	8056895	8064041	STRG.62991.1	+	8056895,8062619	8057148,8064041	0.872340
prostate_gland_male_adult_54_years	chr5	134613048	134613113	134613096	-	High_confidence	13	15	100	8.026417	4.937052	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.820000
prostate_gland_male_adult_54_years	chr4	39544055	39544056	39544055	-	High_confidence	249	253	310	24.881891	5.911489	chr4	39543948	39544368	LTR|ERVK|LTR3B	-	chr4	39539318	39544216	STRG.19662.1	-	39539318,39543823	39539775,39544216	0.954839
prostate_gland_male_adult_54_years	chr19	9140393	9140428	9140393	+	High_confidence	21	21	59	4.735586	4.808087	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.762712
prostate_gland_male_adult_54_years	chr12	122274041	122274088	122274041	-	RAMPAGE_only	5	5	16	1.284227	3.280639	chr12	122273741	122274010	SINE|Alu|AluSz	-	chr12	122272460	122275823	CLIP1|ENST00000501271.2	-	122272460,122274037	122273100,122275823	1.000000
prostate_gland_male_adult_54_years	chrX	72305913	72305914	72305913	-	High_confidence	119	145	153	12.280417	4.529052	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144885.1	-	72301637,72302809,72305301,72305824	72302244,72302934,72305422,72305914	0.993464
prostate_gland_male_adult_54_years	chr22	44808312	44808350	44808312	+	RAMPAGE_only	6	6	14	1.123698	3.182006	chr22	44808310	44808387	LINE|CR1|L3b	+	chr22	44801819	44825551	ARHGAP8|ENST00000498310.1	+	44801819,44808306,44814671,44822370,44825482	44802164,44808438,44814758,44822469,44825551	0.857143
prostate_gland_male_adult_54_years	chr11	3477038	3477073	3477049	-	High_confidence	13	14	78	6.260605	5.186467	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3473584	3477070	STRG.44958.1	-	3473584,3476942	3476373,3477070	0.923077
prostate_gland_male_adult_54_years	chr9	62897430	62897431	62897430	+	High_confidence	9	9	13	1.043434	3.392747	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.538462
prostate_gland_male_adult_54_years	chr1	45339712	45339721	45339720	+	High_confidence	7	7	12	0.963170	2.663533	chr1	45339769	45339887	LINE|L2|L2c	+	chr1	45339669	45343978	TOE1|NM_025077.3	+	45339669,45341072,45341302,45341472,45341948,45342383,45342842,45343081	45340304,45341215,45341343,45341569,45342107,45342643,45343002,45343978	0.916667
prostate_gland_male_adult_54_years	chr8	69356999	69357031	69357030	+	High_confidence	6	6	16	1.284227	3.327820	chr8	69351385	69357434	LINE|L1|L1PA3	-	chr8	69357021	69358680	STRG.36235.1	+	69357021,69358547	69357437,69358680	0.750000
prostate_gland_male_adult_54_years	chr4	79258867	79258870	79258867	+	High_confidence	13	16	28	2.247397	4.208410	chr4	79257987	79259677	LTR|ERV1|MER52A	+	chr4	79258780	79308654	LINC01088|ENST00000511241.5	+	79258780,79306690,79308272	79259039,79306728,79308654	0.964286
prostate_gland_male_adult_54_years	chr4	41359606	41359607	41359606	+	High_confidence	219	229	249	19.985777	5.057370	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.839357
prostate_gland_male_adult_54_years	chr2	73982163	73982164	73982163	-	High_confidence	12	12	18	1.444755	3.419382	chr2	73982060	73982404	LINE|L2|L2c	-	chr2	73957966	73981439	DGUOK-AS1|NR_104030.1	-	73957966,73981134	73958207,73981439	0.944444
prostate_gland_male_adult_54_years	chr9	62376790	62376801	62376800	-	High_confidence	7	7	16	1.284227	3.240224	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.687500
prostate_gland_male_adult_54_years	chr18	58953940	58953979	58953948	+	High_confidence	7	7	42	3.371095	4.509872	chr18	58953830	58953961	SINE|MIR|MIRc	+	chr18	58953183	58984799	ZNF532|ENST00000592249.5	+	58953183,58953517,58979054,58981469,58983971	58953282,58953799,58979167,58981617,58984799	0.880952
prostate_gland_male_adult_54_years	chr20	53504303	53504314	53504303	-	High_confidence	12	14	49	3.932944	4.504248	chr20	53503851	53509874	LINE|L1|L1PA2	+	chr20	53434972	53504308	STRG.71611.1	-	53434972,53447213,53452936,53455255,53461468,53504108	53434993,53447277,53453108,53455440,53461568,53504308	0.836735
prostate_gland_male_adult_54_years	chr1	79269948	79269949	79269948	+	High_confidence	98	101	107	8.588266	5.042777	chr1	79269498	79270456	LTR|ERV1|LTR12C	+	chr1	79270218	79309615	STRG.2865.1	+	79270218,79309545	79270686,79309615	0.878505
prostate_gland_male_adult_54_years	chr5	34244757	34244779	34244778	-	High_confidence	3	3	7	0.561849	2.584963	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.714286
prostate_gland_male_adult_54_years	chr12	93412356	93412369	93412368	-	RAMPAGE_only	6	7	11	0.882906	2.913977	chr12	93412068	93412451	LINE|L2|L2a	+	chr12	93409741	93441256	UBE2N|ENST00000549833.1	-	93409741,93410733,93411052,93424269,93441143	93410079,93410874,93411299,93424390,93441256	0.818182
prostate_gland_male_adult_54_years	chr1	153967486	153967512	153967511	+	High_confidence	15	15	48	3.852680	4.532268	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.791667
prostate_gland_male_adult_54_years	chr9	128684459	128684483	128684479	-	RAMPAGE_only	10	10	48	3.852680	4.795915	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.645833
prostate_gland_male_adult_54_years	chr18	55893190	55893241	55893190	+	High_confidence	4	4	19	1.525019	3.392147	chr18	55887412	55893439	LINE|L1|L1PA3	-	chr18	55893037	56023462	AC009271.1|ENST00000589440.1	+	55893037,56017727,56023401	55893442,56017779,56023462	0.578947
prostate_gland_male_adult_54_years	chr1	77532106	77532107	77532106	+	High_confidence	10	10	15	1.203962	3.773557	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.866667
prostate_gland_male_adult_54_years	chr6	43013392	43013393	43013392	-	High_confidence	15	15	20	1.605283	3.921928	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
prostate_gland_male_adult_54_years	chr10	28335295	28335296	28335295	-	RAMPAGE_only	6	6	8	0.642113	2.500000	chr10	28335237	28335330	SINE|Alu|AluYc	-	chr10	28050992	28303066	MPP7|NR_134517.1	-	28050992,28056479,28058494,28059515,28069771,28089670,28119650,28120193,28120593,28124030,28125009,28131559,28147482,28149981,28202152,28238567,28302860	28054244,28056623,28058603,28059743,28069852,28089841,28119715,28120390,28120668,28124116,28125091,28131691,28147563,28150059,28202271,28238735,28303066	0.625000
prostate_gland_male_adult_54_years	chr6	31587201	31587202	31587201	+	High_confidence	7	7	11	0.882906	2.663533	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	1.000000
prostate_gland_male_adult_54_years	chr9	16299449	16299462	16299461	-	RAMPAGE_only	10	10	21	1.685547	3.826875	chr9	16294081	16300587	LINE|L1|L1PB1	+	chr9	16203934	16276313	C9orf92|ENST00000380685.5	-	16203934,16215215,16215771,16276230	16204038,16215279,16215899,16276313	0.857143
prostate_gland_male_adult_54_years	chr8	80485592	80485619	80485592	+	High_confidence	25	25	72	5.779020	5.512177	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.708333
prostate_gland_male_adult_54_years	chr19	50877431	50878042	50877467	+	High_confidence	151	151	1582	126.977910	7.873395	chr19	50877214	50877817	LINE|L2|L2a	-	chr19	50876943	50878605	STRG.70090.27	+	50876943,50877202	50877008,50878605	0.963338
prostate_gland_male_adult_54_years	chr7	137254953	137254969	137254963	-	RAMPAGE_only	4	4	17	1.364491	3.000000	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.941176
prostate_gland_male_adult_54_years	chr3	6769742	6769787	6769742	+	High_confidence	2	2	8	0.642113	2.750000	chr3	6764136	6770100	LINE|L1|L1PA3	-	chr3	6770000	7146656	GRM7|ENST00000443259.1	+	6770000,6786591,6828630,6884219,7146451	6770118,6786686,6828704,6884306,7146656	0.500000
prostate_gland_male_adult_54_years	chr1	21841544	21841630	21841544	-	RAMPAGE_only	2	2	14	1.123698	3.392747	chr1	21841366	21841498	SINE|MIR|MIRb	-	chr1	21822231	21937297	HSPG2|NM_005529.6	-	21822231,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174,21937154	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896310,21937297	0.928571
prostate_gland_male_adult_54_years	chr8	144106344	144106365	144106344	+	RAMPAGE_only	5	5	13	1.043434	3.084963	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144104511	144107611	MAF1|ENST00000534585.5	+	144104511,144105639,144105868,144106075,144106342,144106834,144107087	144104858,144105766,144105997,144106241,144106674,144106963,144107611	0.923077
prostate_gland_male_adult_54_years	chr14	18931808	18931809	18931808	+	RAMPAGE_only	6	6	9	0.722377	2.750000	chr14	18931394	18932483	LINE|L1|L1MA6	-	chr14	18929580	18947185	STRG.53907.2	+	18929580,18931741,18934040,18938861,18942330	18929853,18931848,18934153,18938988,18947185	0.888889
prostate_gland_male_adult_54_years	chr2	164995103	164995140	164995117	+	RAMPAGE_only	3	7	17	1.364491	3.750000	chr2	164993938	164995321	LTR|ERV1|LTR12C	-	chr2	164992156	165208261	AC019197.1|ENST00000629817.2	+	164992156,164993460,165091119,165130044,165139598,165194895,165208112	164992168,164993640,165091299,165130204,165139709,165195083,165208261	0.529412
prostate_gland_male_adult_54_years	chr19	49201279	49201314	49201300	+	High_confidence	8	8	26	2.086868	4.286790	chr19	49201029	49201605	LTR|ERV1|LTR10C	-	chr19	49201281	49211680	STRG.69486.7	+	49201281,49201963,49210208,49210709,49211014,49211163,49211493	49201351,49202141,49210405,49210842,49211087,49211269,49211680	0.884615
prostate_gland_male_adult_54_years	chr17	47067498	47067534	47067498	-	High_confidence	212	222	834	66.940314	6.018012	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.914868
prostate_gland_male_adult_54_years	chr7	64999443	64999444	64999443	-	RAMPAGE_only	8	8	9	0.722377	2.500000	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64990808	65006653	ERV3-1|ENST00000394323.2	-	64990808,65006540	64993414,65006653	0.888889
prostate_gland_male_adult_54_years	chr2	233691709	233691710	233691709	+	High_confidence	8	8	10	0.802642	2.646439	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233691709	233772341	UGT1A6|ENST00000446481.6	+	233691709,233693798,233767033,233767848,233768219,233769530,233772261	233691820,233693865,233767165,233767936,233768439,233769664,233772341	0.700000
prostate_gland_male_adult_54_years	chr7	112423400	112423410	112423400	+	High_confidence	16	16	26	2.086868	4.209867	chr7	112423337	112423544	SINE|MIR|MIRb	-	chr7	112423143	112475527	IFRD1|ENST00000005558.8	+	112423143,112450507,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112423432,112450782,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112475527	0.961538
prostate_gland_male_adult_54_years	chr1	6208681	6208682	6208681	-	High_confidence	227	228	228	18.300230	4.137789	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.964912
prostate_gland_male_adult_54_years	chrX	66868960	66869016	66868960	-	High_confidence	24	25	80	6.421133	5.374868	chrX	66868899	66869227	LINE|L2|L2c	-	chrX	66856466	66868944	STRG.75825.1	-	66856466,66868867	66858334,66868944	0.887500
prostate_gland_male_adult_54_years	chr9	73113889	73113895	73113894	-	High_confidence	54	55	95	7.625096	5.654420	chr9	73113574	73113872	SINE|Alu|AluJo	-	chr9	73090454	73113889	STRG.39874.2	-	73090454,73111793,73112238,73113596	73091997,73111906,73112493,73113889	0.957895
prostate_gland_male_adult_54_years	chr10	50579900	50579901	50579900	-	RAMPAGE_only	5	5	7	0.561849	2.584963	chr10	50578916	50580156	LINE|L1|HAL1	+	chr10	50341331	50623977	SGMS1|ENST00000619438.4	-	50341331,50343491,50433475,50460672,50466889,50519830,50590152,50623706	50341434,50344345,50433556,50460814,50466932,50519921,50590247,50623977	0.857143
prostate_gland_male_adult_54_years	chr19	15608040	15608041	15608040	-	High_confidence	157	159	162	13.002795	5.146498	chr19	15607625	15609207	LTR|ERV1|LTR12C	-	chr19	15607613	15608028	STRG.67833.1	-	15607613	15608028	0.882716
prostate_gland_male_adult_54_years	chr16	61918302	61918303	61918302	+	High_confidence	15	16	20	1.605283	3.846439	chr16	61918303	61919817	LINE|L1|L1HS	+	chr16	61918320	61940697	AC012174.1|ENST00000562349.1	+	61918320,61934111,61937913,61940241	61918399,61934223,61937980,61940697	0.750000
prostate_gland_male_adult_54_years	chr16	10628184	10628190	10628184	-	RAMPAGE_only	12	14	32	2.568453	4.476410	chr16	10627836	10628145	SINE|Alu|AluSx	-	chr16	10627500	10671778	TEKT5|ENST00000574923.1	-	10627500,10635763,10671709	10627799,10635918,10671778	0.937500
prostate_gland_male_adult_54_years	chr8	17692204	17692226	17692225	-	High_confidence	2	2	6	0.481585	2.584963	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.500000
prostate_gland_male_adult_54_years	chr7	103353945	103353957	103353956	+	High_confidence	4	4	9	0.722377	2.947703	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.888889
prostate_gland_male_adult_54_years	chr19	38289157	38289182	38289157	+	High_confidence	3	3	12	0.963170	3.022055	chr19	38289206	38289513	SINE|Alu|AluSc8	+	chr19	38288405	38292468	SPINT2|ENST00000585357.1	+	38288405,38290536	38290280,38292468	1.000000
prostate_gland_male_adult_54_years	chr1	1655409	1655481	1655409	-	RAMPAGE_only	5	5	18	1.444755	3.794653	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.888889
prostate_gland_male_adult_54_years	chr14	91462147	91462181	91462180	-	High_confidence	5	5	21	1.685547	3.221097	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.904762
prostate_gland_male_adult_54_years	chr1	174238848	174238907	174238887	+	RAMPAGE_only	6	6	40	3.210567	4.406198	chr1	174233266	174239293	LINE|L1|L1PA2	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.850000
prostate_gland_male_adult_54_years	chr1	21218865	21218891	21218890	-	RAMPAGE_only	4	7	15	1.203962	3.189898	chr1	21218585	21218890	SINE|Alu|AluSx1	-	chr1	21217246	21279690	ECE1|NM_001113347.1	-	21217246,21221746,21225249,21227158,21227930,21233557,21235849,21236745,21238133,21244988,21247220,21255946,21257524,21258692,21260270,21272698,21279190	21220131,21221842,21225440,21227226,21228041,21233661,21235927,21236844,21238244,21245103,21247363,21256138,21257590,21258839,21260392,21272911,21279690	1.000000
prostate_gland_male_adult_54_years	chr17	1770472	1770513	1770512	+	High_confidence	10	10	37	2.969774	4.574054	chr17	1770450	1770759	SINE|Alu|AluSx1	-	chr17	1770525	1772032	SERPINF1|ENST00000570820.1	+	1770525,1771871	1771184,1772032	0.972973
prostate_gland_male_adult_54_years	chr7	134527596	134527597	134527596	+	High_confidence	15	15	16	1.284227	3.056565	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.937500
prostate_gland_male_adult_54_years	chr6	3720076	3720077	3720076	-	High_confidence	182	183	228	18.300230	5.407075	chr6	3719558	3721329	LTR|ERV1|LTR12C	-	chr6	3593770	3720060	STRG.26641.2	-	3593770,3719362	3594535,3720060	0.964912
prostate_gland_male_adult_54_years	chr5	109383417	109383460	109383417	-	High_confidence	8	8	29	2.327661	4.280226	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
prostate_gland_male_adult_54_years	chr4	155444802	155444839	155444838	+	High_confidence	15	16	59	4.735586	4.402613	chr4	155444722	155445092	LTR|ERVL-MaLR|MLT1J1	-	chr4	155444812	155448653	STRG.21742.1	+	155444812,155447467	155444890,155448653	0.949153
prostate_gland_male_adult_54_years	chr10	102449836	102449845	102449836	+	High_confidence	77	78	164	13.163323	5.772555	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.975610
prostate_gland_male_adult_54_years	chr1	29166059	29166060	29166059	-	RAMPAGE_only	7	7	9	0.722377	2.500000	chr1	29165912	29166153	SINE|tRNA-RTE|MamSINE1	-	chr1	29154696	29160563	SRSF4|ENST00000497015.5	-	29154696,29159373,29160374	29154910,29159486,29160563	0.777778
prostate_gland_male_adult_54_years	chr10	133369958	133370009	133369958	-	RAMPAGE_only	3	3	17	1.364491	3.452820	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.941176
prostate_gland_male_adult_54_years	chr20	25296873	25296951	25296873	+	RAMPAGE_only	23	23	59	4.735586	4.413594	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	0.983051
prostate_gland_male_adult_54_years	chr14	74568220	74568221	74568220	-	RAMPAGE_only	21	22	24	1.926340	4.136842	chr14	74568115	74568262	DNA|hAT-Tip100|MER91A	-	chr14	74500731	74612072	LTBP2|ENST00000556690.5	-	74500731,74501440,74502652,74503218,74503468,74503925,74504777,74504982,74506047,74506697,74507972,74508603,74508829,74509237,74509733,74510090,74511244,74516821,74521910,74522789,74525123,74526074,74527346,74528482,74528957,74532425,74535925,74549862,74551063,74552186,74552891,74555502,74585853,74603634,74611450	74501029,74501590,74502934,74503386,74503606,74504054,74504861,74505174,74506191,74506823,74508095,74508729,74508952,74509363,74509859,74510213,74511364,74516941,74522039,74522918,74525225,74526114,74527366,74528698,74529122,74532548,74536000,74549965,74551350,74552393,74553062,74555693,74586118,74603705,74612072	0.916667
prostate_gland_male_adult_54_years	chr14	93183528	93183597	93183584	-	RAMPAGE_only	4	4	22	1.765812	3.749903	chr14	93183223	93184271	LTR|Gypsy|MamGyp-int	-	chr14	93182195	93184904	MOAP1|NM_022151.4	-	93182195,93184558,93184809	93184362,93184713,93184904	1.000000
prostate_gland_male_adult_54_years	chr2	185425282	185425351	185425282	+	High_confidence	8	8	23	1.846076	4.142915	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185425010	185504589	STRG.11408.1	+	185425010,185434096,185483033,185502662,185504063	185425507,185434187,185483091,185502724,185504589	0.869565
prostate_gland_male_adult_54_years	chr2	231072232	231072255	231072232	+	RAMPAGE_only	3	3	8	0.642113	2.750000	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231066903	231075566	PSMD1|ENST00000444007.1	+	231066903,231070024,231072332,231075510	231067111,231070168,231072415,231075566	0.500000
prostate_gland_male_adult_54_years	chr5	134612933	134612938	134612933	-	High_confidence	12	13	30	2.407925	3.967720	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.866667
prostate_gland_male_adult_54_years	chr1	184792268	184792285	184792268	-	RAMPAGE_only	3	3	11	0.882906	2.845351	chr1	184791959	184792240	SINE|Alu|AluJo	-	chr1	184791029	184974550	FAM129A|ENST00000367511.3	-	184791029,184798078,184803584,184805945,184808073,184818637,184823166,184823637,184831846,184884632,184890107,184894074,184899178,184974301	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184823742,184831962,184884800,184890222,184894206,184899309,184974550	1.000000
prostate_gland_male_adult_54_years	chr22	40400702	40400709	40400708	+	RAMPAGE_only	6	6	11	0.882906	2.845351	chr22	40400675	40400747	SINE|MIR|MIR3	+	chr22	40370638	40410108	SGSM3|ENST00000485962.5	+	40370638,40400695,40401592,40402138,40404246,40404556,40405140,40405648,40406077,40406437,40407016,40407788,40408070,40408276,40408626,40408793,40408932,40409249,40409464,40409681	40370688,40400813,40401675,40402205,40404455,40404664,40405284,40405844,40406223,40406662,40407568,40407843,40408120,40408429,40408697,40408842,40409018,40409372,40409525,40410108	1.000000
prostate_gland_male_adult_54_years	chr16	80869546	80869555	80869546	-	High_confidence	4	4	10	0.802642	3.121928	chr16	80869348	80869635	SINE|Alu|AluY	+	chr16	80828931	80869523	STRG.62167.3	-	80828931,80840118,80869346	80830757,80840222,80869523	1.000000
prostate_gland_male_adult_54_years	chr5	32403108	32403116	32403115	-	RAMPAGE_only	6	6	12	0.963170	2.845351	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.833333
prostate_gland_male_adult_54_years	chr17	59619894	59619923	59619894	+	High_confidence	1413	1571	4117	330.447569	5.238670	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.963080
prostate_gland_male_adult_54_years	chr17	4143193	4143200	4143199	+	High_confidence	98	98	156	12.521210	5.410442	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.993590
prostate_gland_male_adult_54_years	chr7	6590262	6590286	6590278	+	High_confidence	5	5	27	2.167132	4.060262	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	1.000000
prostate_gland_male_adult_54_years	chr3	156540569	156540570	156540569	-	RAMPAGE_only	41	43	58	4.655322	2.921693	chr3	156540323	156540630	SINE|Alu|AluY	+	chr3	156539552	156554125	SSR3|NM_001308205.1	-	156539552,156544307,156548904,156553654,156553992	156543269,156544439,156549003,156553781,156554125	0.948276
prostate_gland_male_adult_54_years	chr17	41871699	41871791	41871745	-	RAMPAGE_only	13	13	65	5.217171	5.181919	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.830769
prostate_gland_male_adult_54_years	chr18	35345354	35345358	35345357	-	High_confidence	6	6	14	1.123698	3.521641	chr18	35345344	35345538	LINE|L2|L2a	+	chr18	35340234	35345482	ZNF24|ENST00000590140.1	-	35340234,35344668,35345278	35340733,35344721,35345482	0.928571
prostate_gland_male_adult_54_years	chr8	144853500	144853556	144853555	-	High_confidence	7	7	43	3.451359	4.612439	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	0.930233
prostate_gland_male_adult_54_years	chr3	132267516	132267578	132267516	-	RAMPAGE_only	8	12	58	4.655322	5.508161	chr3	132267462	132267786	LINE|L2|L2c	-	chr3	132235502	132260919	STRG.17104.9	-	132235502,132259783	132244336,132260919	0.603448
prostate_gland_male_adult_54_years	chr16	68834354	68834398	68834397	+	RAMPAGE_only	6	7	25	2.006604	3.688722	chr16	68834273	68834516	SINE|Alu|AluJr	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.840000
prostate_gland_male_adult_54_years	chr11	64773466	64773491	64773490	-	RAMPAGE_only	3	3	7	0.561849	2.521641	chr11	64773369	64773442	LINE|RTE-BovB|MamRTE1	-	chr11	64769541	64771607	SF1|ENST00000496969.1	-	64769541,64769963,64770255,64771463	64769609,64770053,64770408,64771607	1.000000
prostate_gland_male_adult_54_years	chr4	145964956	145965016	145965015	+	High_confidence	109	149	378	30.339855	5.975929	chr4	145962412	145968142	LINE|L1|L1PA7	-	chr4	145964969	146088899	STRG.21569.1	+	145964969,145967653,145971349,146048876,146055351,146088756	145965059,145967787,145971483,146049068,146055436,146088899	0.767196
prostate_gland_male_adult_54_years	chr9	68975842	68975846	68975842	-	High_confidence	49	50	97	7.785624	5.466761	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68970286	68975832	STRG.39763.3	-	68970286,68975663	68972641,68975832	0.659794
prostate_gland_male_adult_54_years	chr19	7642267	7642302	7642274	+	High_confidence	6	6	25	2.006604	4.053661	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.680000
prostate_gland_male_adult_54_years	chr4	81154211	81154222	81154211	-	High_confidence	53	81	206	16.534418	6.000896	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.995146
prostate_gland_male_adult_54_years	chr18	59148069	59148150	59148069	+	RAMPAGE_only	4	4	21	1.685547	3.787144	chr18	59148059	59148233	LINE|L2|L2	-	chr18	59155604	59158832	SEC11C|ENST00000591406.1	+	59155604,59157607,59158631	59155807,59157665,59158832	0.619048
prostate_gland_male_adult_54_years	chr4	4269609	4269614	4269609	-	High_confidence	8	8	14	1.123698	2.873141	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.857143
prostate_gland_male_adult_54_years	chr19	9700673	9700674	9700673	-	High_confidence	25	26	26	2.086868	3.363856	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.923077
prostate_gland_male_adult_54_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	13	14	15	1.203962	3.378783	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.600000
prostate_gland_male_adult_54_years	chr5	133089677	133089678	133089677	+	RAMPAGE_only	18	18	24	1.926340	4.186704	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.916667
prostate_gland_male_adult_54_years	chr7	68330436	68330437	68330436	-	High_confidence	68	68	94	7.544832	5.245194	chr7	68330343	68330895	LTR|ERV1|LTR26	+	chr7	68149357	68330426	STRG.32126.1	-	68149357,68184789,68288054,68330087	68150323,68184916,68288233,68330426	0.872340
prostate_gland_male_adult_54_years	chr10	78010197	78010198	78010197	-	RAMPAGE_only	7	10	11	0.882906	2.921928	chr10	78010110	78010280	LINE|L2|L2a	+	chr10	78002196	78019252	POLR3A|ENST00000473588.2	-	78002196,78004715,78007701,78009863,78010470,78013649,78017574,78019161	78002308,78004888,78007866,78009991,78010540,78013790,78017716,78019252	0.636364
prostate_gland_male_adult_54_years	chr19	51976292	51976293	51976292	+	RAMPAGE_only	20	20	21	1.685547	2.584184	chr19	51976151	51976436	LTR|ERVK|LTR3A	+	chr19	51949161	51981367	ZNF350-AS1|ENST00000595010.1	+	51949161,51976390,51980926	51949235,51976573,51981367	0.904762
prostate_gland_male_adult_54_years	chr19	58306086	58306162	58306161	+	High_confidence	7	8	23	1.846076	3.762267	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.739130
prostate_gland_male_adult_54_years	chr3	129256136	129256137	129256136	+	RAMPAGE_only	5	5	8	0.642113	2.521641	chr3	129256170	129256401	DNA|hAT|MamRep38	+	chr3	129249631	129277771	COPG1|ENST00000515725.5	+	129249631,129250681,129252280,129252622,129254667,129254984,129256067,129257469,129257726,129260332,129260618,129263903,129265548,129267023,129267936,129268494,129268931,129271766,129272243,129272806,129274837,129275193,129277293	129249746,129250734,129252361,129252955,129254743,129255077,129256154,129257627,129257860,129260400,129260807,129263999,129265792,129267099,129268040,129268620,129269000,129271909,129272415,129272904,129274976,129275292,129277771	0.875000
prostate_gland_male_adult_54_years	chr16	20676155	20676202	20676161	-	High_confidence	25	28	86	6.902718	5.645225	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.906977
prostate_gland_male_adult_54_years	chr9	68975752	68975784	68975783	-	High_confidence	6	6	29	2.327661	3.937193	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68970286	68975832	STRG.39763.3	-	68970286,68975663	68972641,68975832	0.586207
prostate_gland_male_adult_54_years	chr15	24919833	24919867	24919833	+	High_confidence	2	2	8	0.642113	2.750000	chr15	24919446	24919852	LTR|ERV1|MER31A	-	chr15	24919682	24978539	STRG.56381.2	+	24919682,24920010,24962113,24967931,24974310,24975357,24976304,24976876,24977777,24978192,24978406	24919812,24920124,24962209,24968082,24974456,24975509,24976416,24977029,24977916,24978318,24978539	1.000000
prostate_gland_male_adult_54_years	chr2	173705202	173705213	173705202	+	RAMPAGE_only	7	7	17	1.364491	2.889549	chr2	173699375	173705410	LINE|L1|L1PA2	-	chr2	174395728	174429575	SCRN3|NM_024583.4	+	174395728,174398274,174399921,174400989,174404102,174422884,174424474,174427712	174395817,174398442,174400103,174401189,174404315,174423047,174424649,174429575	1.000000
prostate_gland_male_adult_54_years	chr17	8056883	8056884	8056883	+	High_confidence	326	332	338	27.129288	6.832716	chr17	8056835	8057031	LTR|ERVK|LTR14	+	chr17	8056895	8064041	STRG.62991.2	+	8056895	8064041	0.970414
prostate_gland_male_adult_54_years	chr16	20674497	20674498	20674497	+	High_confidence	12	12	12	0.963170	3.251629	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.500000
prostate_gland_male_adult_54_years	chr5	117454948	117454963	117454949	+	High_confidence	29	37	67	5.377699	5.306804	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.701493
prostate_gland_male_adult_54_years	chr2	201115931	201116014	201115931	+	High_confidence	7	7	39	3.130302	4.181366	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201176687	CFLAR|ENST00000309955.7	+	201116103,201129728,201133028,201135971,201140356,201145377,201149002,201149753,201160431,201163834	201116481,201130146,201133134,201136107,201140439,201145432,201149052,201149835,201160942,201176687	0.871795
prostate_gland_male_adult_54_years	chr4	177445009	177445033	177445009	+	High_confidence	10	10	17	1.364491	3.327820	chr4	177444910	177445732	LTR|ERV1|LTR1A2	+	chr4	177444978	177677126	AC078881.1|ENST00000507023.1	+	177444978,177451474,177593471,177596460,177623658,177675836	177445443,177451590,177593546,177596531,177623802,177677126	0.529412
prostate_gland_male_adult_54_years	chr5	34244698	34244699	34244698	-	RAMPAGE_only	11	12	15	1.203962	2.807355	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34218343	AC138409.2|ENST00000507274.1	-	34175821,34179012,34182679,34218294	34175957,34179097,34182867,34218343	0.933333
prostate_gland_male_adult_54_years	chr2	26298416	26298468	26298416	+	RAMPAGE_only	5	5	15	1.203962	3.521641	chr2	26298403	26299683	LTR|ERV1|HERV15-int	+	chr2	26303825	26304150	STRG.7595.1	+	26303825	26304150	0.800000
prostate_gland_male_adult_54_years	chrX	119441050	119441119	119441118	+	RAMPAGE_only	8	8	41	3.290831	4.534184	chrX	119435468	119441493	LINE|L1|L1HS	-	chrX	119399408	119453182	SLC25A43|ENST00000493093.5	+	119399408,119410189,119452008,119452864	119399678,119410362,119452143,119453182	0.585366
prostate_gland_male_adult_54_years	chr16	67161133	67161143	67161133	+	RAMPAGE_only	5	5	14	1.123698	3.039149	chr16	67161158	67161467	SINE|Alu|AluJo	+	chr16	67159931	67162663	FBXL8|ENST00000518148.1	+	67159931,67161734	67160056,67162663	0.642857
prostate_gland_male_adult_54_years	chr4	86453202	86453325	86453231	-	High_confidence	43	46	318	25.524005	6.328577	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016153	86453225	MAPK10|ENST00000639972.2	-	86016153,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194308,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453225	0.871069
prostate_gland_male_adult_54_years	chr19	3575580	3575629	3575622	+	High_confidence	15	15	53	4.254001	4.718302	chr19	3575668	3575971	SINE|Alu|AluSx1	+	chr19	3575650	3578671	HMG20B|ENST00000487894.5	+	3575650,3576552,3576891,3577980,3578508	3576307,3576625,3577107,3578113,3578671	0.886792
prostate_gland_male_adult_54_years	chr3	132320973	132321003	132320973	-	RAMPAGE_only	36	39	107	8.588266	4.529944	chr3	132320652	132320949	SINE|Alu|AluSx	-	chr3	132291402	132291684	STRG.17104.13	-	132291402	132291684	0.775701
prostate_gland_male_adult_54_years	chr8	53523479	53523519	53523502	-	High_confidence	3	3	15	1.203962	2.973557	chr8	53523216	53523628	LTR|ERV1|HERVE_a-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.733333
prostate_gland_male_adult_54_years	chr19	50802593	50802615	50802593	-	High_confidence	3	3	11	0.882906	3.321928	chr19	50802501	50802785	SINE|Alu|AluSg	+	chr19	50798664	50802614	C19orf48|ENST00000596554.5	-	50798664,50799293,50801182,50802216,50802453	50798958,50799357,50801349,50802257,50802614	0.636364
prostate_gland_male_adult_54_years	chr20	18794077	18794086	18794077	+	High_confidence	19	19	46	3.692152	3.334669	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.978261
prostate_gland_male_adult_54_years	chr4	88595569	88595607	88595569	+	RAMPAGE_only	5	5	12	0.963170	2.855389	chr4	88595552	88595664	SINE|MIR|MIR3	+	chr4	88593377	88653088	HERC3|ENST00000452979.5	+	88593377,88595556,88605794,88649839,88652011,88652868	88593494,88595614,88606049,88649999,88652088,88653088	1.000000
prostate_gland_male_adult_54_years	chr16	20317226	20317297	20317226	-	RAMPAGE_only	15	15	80	6.421133	4.730315	chr16	20317130	20317259	LINE|L2|L2a	-	chr16	20310488	20327507	GP2|ENST00000341642.9	-	20310488,20314656,20315955,20317212,20318184,20319619,20320261,20322868,20326337,20327466	20311281,20314701,20316040,20317375,20318430,20319768,20320473,20322979,20326467,20327507	0.975000
prostate_gland_male_adult_54_years	chr10	17386954	17387000	17386954	+	High_confidence	14	20	58	4.655322	5.217720	chr10	17386606	17386994	LTR|ERV1|MER48	-	chr10	17386950	17410631	ST8SIA6-AS1|ENST00000377597.6	+	17386950,17399104,17407967,17409320	17387075,17399202,17408244,17410631	0.672414
prostate_gland_male_adult_54_years	chr1	147173203	147173220	147173219	+	High_confidence	5	5	11	0.882906	2.732159	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	1.000000
prostate_gland_male_adult_54_years	chr20	14226566	14226583	14226576	+	High_confidence	8	8	25	2.006604	3.733661	chr20	14226326	14227700	LTR|ERV1|LTR12C	+	chr20	14227134	14228146	STRG.70639.1	+	14227134	14228146	0.800000
prostate_gland_male_adult_54_years	chr17	2667195	2667196	2667195	+	High_confidence	8	8	8	0.642113	2.750000	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	1.000000
prostate_gland_male_adult_54_years	chr8	30812418	30812454	30812453	-	High_confidence	8	8	22	1.765812	3.754442	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	1.000000
prostate_gland_male_adult_54_years	chr3	141455852	141455886	141455869	-	High_confidence	4	4	20	1.605283	3.932138	chr3	141455758	141456149	DNA|hAT-Tip100|MER115	+	chr3	141417438	141455889	STRG.17331.1	-	141417438,141454530,141455203	141417453,141454596,141455889	0.650000
prostate_gland_male_adult_54_years	chr18	41632127	41632162	41632127	-	High_confidence	5	5	29	2.327661	4.182006	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41521197	41632075	KC6|ENST00000600183.5	-	41521197,41525354,41631999	41521496,41525526,41632075	0.551724
prostate_gland_male_adult_54_years	chr19	51027512	51027668	51027667	-	High_confidence	74	77	683	54.820425	6.664267	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.897511
prostate_gland_male_adult_54_years	chr12	64293379	64293380	64293379	-	High_confidence	18	25	25	2.006604	4.168296	chr12	64287349	64293377	LINE|L1|L1PA2	-	chr12	64266982	64293383	C12orf56|ENST00000536975.5	-	64266982,64270535,64274900,64275297,64277679,64284663,64285953,64293280	64267288,64270714,64274975,64275372,64277803,64284753,64286060,64293383	0.920000
prostate_gland_male_adult_54_years	chrX	16712958	16712959	16712958	-	High_confidence	4	4	6	0.481585	2.584963	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16587998	16712979	CTPS2|NM_019857.4	-	16587998,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712979	0.666667
prostate_gland_male_adult_54_years	chrX	16712879	16712907	16712906	-	High_confidence	3	4	11	0.882906	2.846439	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.818182
prostate_gland_male_adult_54_years	chr14	67677664	67677980	67677855	-	RAMPAGE_only	64	66	1078	86.524770	6.922554	chr14	67677779	67677861	SINE|Alu|AluSx	-	chr14	67677392	67692851	RDH11|ENST00000553578.5	-	67677392,67685014,67686083,67690211	67678423,67685204,67686257,67692851	0.870130
prostate_gland_male_adult_54_years	chr17	6853860	6853887	6853886	+	High_confidence	4	4	9	0.722377	2.503258	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853860	6902192	ALOX12P2|ENST00000574727.5	+	6853860,6854213,6892002,6894317,6894883,6895095,6895342,6896315,6896553,6898528,6898799,6899390,6899592,6899867	6854060,6854435,6892075,6894513,6895006,6895199,6895503,6896459,6896763,6898698,6898929,6899490,6899760,6902192	0.888889
prostate_gland_male_adult_54_years	chr11	18706991	18707033	18706991	-	High_confidence	11	11	37	2.969774	4.378240	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18704308	18706997	STRG.45563.1	-	18704308,18705816,18706913	18704538,18706146,18706997	1.000000
prostate_gland_male_adult_54_years	chr22	23536877	23536878	23536877	+	High_confidence	24	24	30	2.407925	4.012188	chr22	23536061	23537026	LTR|ERVK|LTR5_Hs	+	chr22	23536880	23539480	PCAT14|ENST00000629869.1	+	23536880,23538760	23537136,23539480	0.800000
prostate_gland_male_adult_54_years	chr4	142474407	142474443	142474407	-	High_confidence	2	3	10	0.802642	2.721928	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.500000
prostate_gland_male_adult_54_years	chr8	18666153	18666165	18666164	-	RAMPAGE_only	4	4	9	0.722377	2.750000	chr8	18666060	18666349	SINE|Alu|AluSx	-	chr8	18530710	18684099	PSD3|ENST00000428502.6	-	18530710,18556208,18572527,18575127,18600363,18632612,18655641,18683773	18535958,18556352,18572672,18575285,18600434,18632806,18655685,18684099	0.777778
prostate_gland_male_adult_54_years	chr9	129042506	129042507	129042506	+	RAMPAGE_only	7	7	9	0.722377	2.725481	chr9	129042512	129042674	SINE|MIR|MIRc	+	chr9	129036973	129072072	FAM73B|NM_032809.2	+	129036973,129040451,129042303,129048426,129049380,129049826,129059153,129060549,129061230,129063243,129063544,129067772,129068197,129069075,129069848,129070246	129037016,129040690,129042514,129048539,129049498,129049963,129059271,129060650,129061346,129063316,129063631,129067871,129068332,129069129,129069965,129072072	1.000000
prostate_gland_male_adult_54_years	chr2	174410027	174410098	174410039	+	High_confidence	8	8	68	5.457963	4.866385	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410036	174428859	SCRN3|ENST00000548921.5	+	174410036,174422884,174424474,174427712	174410225,174423047,174424649,174428859	0.764706
prostate_gland_male_adult_54_years	chr16	69996417	69996438	69996417	-	RAMPAGE_only	7	7	14	1.123698	3.324863	chr16	69996297	69996477	SINE|MIR|MIRb	+	chr16	69993019	70021930	PDXDC2P-NPIPB14P|ENST00000525331.5	-	69993019,69996068,69996389,70010750,70011840,70014103,70018046,70021823	69993248,69996226,69996468,70010856,70011929,70014167,70018097,70021930	1.000000
prostate_gland_male_adult_54_years	chr1	12572735	12572809	12572735	-	RAMPAGE_only	4	4	26	2.086868	4.053509	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.923077
prostate_gland_male_adult_54_years	chr17	57766839	57766921	57766897	+	High_confidence	11	11	33	2.648717	4.680758	chr17	57766864	57767006	SINE|MIR|MIRc	+	chr17	57766852	57777820	STRG.64756.1	+	57766852,57777210	57767260,57777820	0.545455
prostate_gland_male_adult_54_years	chr1	166850222	166850265	166850222	+	RAMPAGE_only	6	6	17	1.364491	2.933955	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
prostate_gland_male_adult_54_years	chr3	134485387	134485501	134485449	-	High_confidence	6	7	31	2.488189	4.548394	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.870968
prostate_gland_male_adult_54_years	chr8	53514941	53514995	53514975	-	RAMPAGE_only	5	6	16	1.284227	2.983459	chr8	53514547	53514992	LTR|ERVL|LTR16B	-	chr8	53511554	53523931	STRG.35984.1	-	53511554,53521018,53523328	53516954,53521379,53523931	1.000000
prostate_gland_male_adult_54_years	chr3	129424164	129424181	129424180	-	High_confidence	5	7	17	1.364491	3.625000	chr3	129423768	129424204	LINE|L2|L2c	+	chr3	129414029	129424169	STRG.16869.2	-	129414029,129418253,129421366,129424058	129415401,129418448,129421803,129424169	0.882353
prostate_gland_male_adult_54_years	chr17	40648567	40648584	40648567	-	High_confidence	7	7	25	2.006604	3.973661	chr17	40648546	40648925	LINE|L2|L2b	+	chr17	40625002	40648654	SMARCE1|ENST00000643318.1	-	40625002,40630713,40631591,40632194,40635930,40636394,40637491,40645795,40647772	40628993,40630924,40631693,40632367,40636102,40636526,40637572,40645847,40648654	0.960000
prostate_gland_male_adult_54_years	chr9	39810023	39810084	39810033	-	High_confidence	24	24	58	4.655322	5.091405	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.637931
prostate_gland_male_adult_54_years	chr8	123866008	123866009	123866008	-	High_confidence	35	40	40	3.210567	3.755058	chr8	123859986	123866007	LINE|L1|L1PA2	-	chr8	123856756	123865998	STRG.37243.1	-	123856756,123865909	123857123,123865998	0.850000
prostate_gland_male_adult_54_years	chr4	118265841	118265846	118265844	-	High_confidence	7	10	24	1.926340	3.534219	chr4	118265367	118266730	LTR|ERV1|LTR12C	+	chr4	118125931	118266039	STRG.21059.1	-	118125931,118204159,118251568,118258975,118265783	118126102,118204282,118251687,118259075,118266039	0.708333
prostate_gland_male_adult_54_years	chr16	67416003	67416012	67416005	+	High_confidence	5	8	17	1.364491	3.452820	chr16	67415897	67416018	LINE|L2|L2b	+	chr16	67415912	67425560	STRG.61713.1	+	67415912,67425378	67416143,67425560	0.588235
prostate_gland_male_adult_54_years	chr12	85318041	85318060	85318041	+	High_confidence	3	3	13	1.043434	3.085055	chr12	85312419	85318459	LINE|L1|L1PA2	-	chr12	85318059	85342912	AC131532.1|ENST00000555596.1	+	85318059,85318957,85342471	85318115,85318979,85342912	0.846154
prostate_gland_male_adult_54_years	chr19	45450739	45450766	45450765	-	High_confidence	7	7	30	2.407925	4.456565	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.833333
prostate_gland_male_adult_54_years	chrX	53585017	53585060	53585037	-	RAMPAGE_only	4	6	23	1.846076	3.351953	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53542442	53594627	STRG.75458.5	-	53542442,53543885,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498	53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575785,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594627	0.956522
prostate_gland_male_adult_54_years	chr12	3215196	3215267	3215240	+	High_confidence	23	28	130	10.434342	5.825269	chr12	3215284	3215474	SINE|MIR|MIRc	+	chr12	3215250	3282390	STRG.48607.4	+	3215250,3278497,3278991,3280381,3281197,3281733	3215355,3278612,3279066,3280483,3281329,3282390	0.723077
prostate_gland_male_adult_54_years	chr22	15724478	15724520	15724489	+	RAMPAGE_only	7	7	25	2.006604	3.827910	chr22	15723558	15724888	LINE|L1|L1PA12	+	chr22	15697580	15769109	STRG.73026.1	+	15697580,15698661,15700077,15702685,15708019,15709781,15710867,15719659,15721285,15741299,15746629,15754387,15765225	15698566,15698768,15700215,15702756,15708090,15709826,15711034,15719778,15726372,15741435,15746899,15754453,15769109	0.920000
prostate_gland_male_adult_54_years	chr3	3963451	3963481	3963461	-	High_confidence	11	12	46	3.692152	4.233427	chr3	3963076	3969110	LINE|L1|L1HS	+	chr3	3618122	3963505	STRG.13349.2	-	3618122,3648611,3651196,3777724,3779240,3782502,3788913,3822733,3827241,3914999,3961624,3963057	3618221,3648718,3651384,3777803,3779322,3782701,3789074,3822897,3827509,3915117,3961699,3963505	0.913043
prostate_gland_male_adult_54_years	chr6	110643250	110643274	110643250	-	High_confidence	19	19	39	3.130302	4.875146	chr6	110643223	110643428	LINE|L1|L1ME3F	+	chr6	110609977	110643353	STRG.29326.3	-	110609977,110621103,110622087,110622814,110623289,110626775,110627001,110632029,110638648,110643190	110614666,110621370,110622166,110622912,110623362,110626845,110627145,110632161,110638706,110643353	1.000000
prostate_gland_male_adult_54_years	chr1	156752073	156752113	156752112	-	High_confidence	6	7	17	1.364491	3.375000	chr1	156752098	156752165	LINE|L2|L2c	-	chr1	156742106	156752232	HDGF|NM_001126051.1	-	156742106,156743651,156744162,156745007,156745296,156752037	156743455,156743878,156744348,156745146,156745373,156752232	0.941176
prostate_gland_male_adult_54_years	chr14	19400053	19400073	19400053	-	RAMPAGE_only	4	4	15	1.203962	3.182006	chr14	19399503	19400833	LINE|L1|L1PA12	-	chr14	19355826	19434341	STRG.53930.9	-	19355826,19368192,19375741,19381176,19397951,19399646,19404616,19409332,19413353,19414561,19416287,19421623,19424164,19425605,19425807,19428541,19428874,19433768	19357426,19368258,19376011,19381723,19398938,19403109,19404735,19409381,19413520,19414606,19416358,19421694,19424302,19425712,19426988,19428715,19428989,19434341	0.733333
prostate_gland_male_adult_54_years	chr17	32684271	32684272	32684271	-	RAMPAGE_only	86	88	101	8.106681	5.645303	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32638774	32659451	MYO1D|ENST00000581059.5	-	32638774,32653842,32654476,32659114,32659424	32638835,32653947,32654621,32659338,32659451	0.613861
prostate_gland_male_adult_54_years	chr6	44731241	44731254	44731253	+	High_confidence	4	4	9	0.722377	2.500000	chr6	44731208	44731294	SINE|MIR|MIR3	-	chr6	44731127	44833255	STRG.28080.2	+	44731127,44772518,44829587	44731368,44772619,44833255	0.666667
prostate_gland_male_adult_54_years	chr14	29666081	29666128	29666081	-	High_confidence	3	5	14	1.123698	3.026987	chr14	29665934	29666040	LINE|L1|L1PB3	-	chr14	29638295	29666158	PRKD1|ENST00000468370.5	-	29638295,29638693,29656475,29663698,29666076	29638566,29638904,29656499,29663859,29666158	0.857143
prostate_gland_male_adult_54_years	chr20	129954	129965	129964	+	High_confidence	17	17	33	2.648717	4.135303	chr20	129964	135977	LINE|L1|L1PA2	+	chr20	129973	145707	STRG.69923.1	+	129973,145414	130056,145707	0.696970
prostate_gland_male_adult_54_years	chr14	81170402	81170420	81170402	-	High_confidence	8	8	32	2.568453	4.091135	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.968750
prostate_gland_male_adult_54_years	chr6	1250890	1250908	1250907	+	High_confidence	20	20	37	2.969774	4.378240	chr6	1250787	1250910	SINE|MIR|MIRc	-	chr6	1251092	1251494	STRG.26413.1	+	1251092	1251494	0.702703
prostate_gland_male_adult_54_years	chr16	74485805	74485828	74485827	-	RAMPAGE_only	3	3	8	0.642113	2.521641	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	0.875000
prostate_gland_male_adult_54_years	chr21	33931146	33931225	33931146	+	High_confidence	11	11	54	4.334265	3.783743	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.888889
prostate_gland_male_adult_54_years	chr5	117455061	117455102	117455061	+	High_confidence	4	4	21	1.685547	3.221097	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117454955	117455460	STRG.24491.1	+	117454955	117455460	0.571429
prostate_gland_male_adult_54_years	chrX	53546444	53546454	53546444	-	RAMPAGE_only	5	5	10	0.802642	2.947703	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.700000
prostate_gland_male_adult_54_years	chr6	57394647	57394666	57394647	+	High_confidence	2	2	6	0.481585	2.584963	chr6	57392680	57397716	LINE|L1|L1PB1	-	chr6	57394726	57646849	STRG.28393.3	+	57394726,57402128,57507386,57532410,57537439,57601092,57606374,57632132,57645927	57394826,57402268,57507454,57532483,57537625,57601219,57606457,57632201,57646849	0.833333
prostate_gland_male_adult_54_years	chr8	61578141	61578142	61578141	+	High_confidence	431	436	439	35.235969	5.615672	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.984055
prostate_gland_male_adult_54_years	chr6	82101717	82101765	82101717	-	RAMPAGE_only	6	6	22	1.765812	3.880180	chr6	82101303	82107312	LINE|L1|L1PA2	+	chr6	81845184	81933480	LINC02542|ENST00000418567.1	-	81845184,81928856,81933428	81845909,81928901,81933480	0.727273
prostate_gland_male_adult_54_years	chr6	79631273	79631329	79631302	+	High_confidence	120	120	393	31.543817	6.583262	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.984733
prostate_gland_male_adult_54_years	chr22	18149868	18149883	18149868	+	High_confidence	10	10	18	1.444755	3.016876	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
prostate_gland_male_adult_54_years	chr8	57492901	57492902	57492901	+	High_confidence	8	8	10	0.802642	2.921928	chr8	57492877	57493170	LINE|L1|HAL1	-	chr8	57492883	57545943	AC090796.1|ENST00000520370.1	+	57492883,57545468	57492975,57545943	0.600000
prostate_gland_male_adult_54_years	chr22	19938195	19938223	19938195	-	High_confidence	8	8	14	1.123698	3.378783	chr22	19935775	19938863	LTR|ERVK|HERVK11-int	+	chr22	19875517	19938179	TXNRD2|ENST00000542719.6	-	19875517,19877039,19878089,19878365,19880178,19880621,19883324,19895406,19898038,19899048,19911376,19915213,19915764,19918142,19918859,19919542,19931029,19937982	19875807,19877234,19878187,19878437,19880271,19880717,19883461,19895581,19898130,19899068,19911447,19915276,19915843,19918217,19919004,19919599,19931098,19938179	1.000000
prostate_gland_male_adult_54_years	chr20	57718779	57718780	57718779	+	High_confidence	10	11	14	1.123698	3.521641	chr20	57718821	57718942	SINE|MIR|MIRc	+	chr20	57718770	57719460	STRG.71662.1	+	57718770	57719460	0.857143
prostate_gland_male_adult_54_years	chr19	50860707	50860708	50860707	-	High_confidence	22	23	23	1.846076	4.186704	chr19	50860689	50861303	LTR|ERVL|MER77	-	chr19	50854915	50860653	STRG.70091.1	-	50854915,50856239,50858028,50858458,50859971	50855001,50856399,50858315,50858595,50860653	0.956522
prostate_gland_male_adult_54_years	chr2	233691653	233691674	233691673	+	High_confidence	3	3	6	0.481585	2.584963	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233691674	233773299	UGT1A6|NM_205862.1	+	233691674,233693798,233767033,233767848,233768219,233772261	233691820,233693865,233767165,233767936,233768439,233773299	0.500000
prostate_gland_male_adult_54_years	chr19	51886854	51886864	51886861	-	High_confidence	5	5	13	1.043434	2.584963	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51880697	51886465	ZNF577|ENST00000639183.1	-	51880697,51886115	51880877,51886465	0.769231
prostate_gland_male_adult_54_years	chr8	143039256	143039267	143039266	+	High_confidence	4	4	10	0.802642	2.921928	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.900000
prostate_gland_male_adult_54_years	chr1	60640397	60640472	60640429	-	High_confidence	5	5	44	3.531623	5.050341	chr1	60640012	60646037	LINE|L1|L1PA2	+	chr1	60528913	60640477	STRG.2390.3	-	60528913,60537680,60540248,60542289,60588036,60595537,60600126,60640010	60529249,60537788,60540433,60542411,60588162,60596373,60600270,60640477	0.840909
prostate_gland_male_adult_54_years	chr1	83182543	83182567	83182566	-	RAMPAGE_only	2	2	6	0.481585	2.584963	chr1	83182174	83188201	LINE|L1|L1PA2	+	chr1	83019518	83103091	STRG.2888.1	-	83019518,83102901	83021428,83103091	0.500000
prostate_gland_male_adult_54_years	chr7	6953955	6953970	6953961	-	High_confidence	4	4	15	1.203962	3.664498	chr7	6950904	6958745	LTR|ERV1|HERVE-int	-	chr7	6952041	6953968	STRG.30767.1	-	6952041,6953825	6953249,6953968	0.933333
prostate_gland_male_adult_54_years	chr3	154089587	154089603	154089602	-	High_confidence	13	13	48	3.852680	4.349985	chr3	154089524	154089737	DNA|hAT-Charlie|MER102a	-	chr3	154022082	154089770	STRG.17527.1	-	154022082,154026545,154030276,154089328	154022171,154026642,154030376,154089770	0.604167
prostate_gland_male_adult_54_years	chr8	53735172	53735180	53735172	-	RAMPAGE_only	13	13	28	2.247397	3.101955	chr8	53733191	53736173	LTR|ERV1|HERVE_a-int	+	chr8	53715672	53739623	ATP6V1H|ENST00000522159.5	-	53715672,53739552	53716024,53739623	0.964286
prostate_gland_male_adult_54_years	chr18	80147915	80147930	80147915	+	High_confidence	4	4	10	0.802642	2.846439	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80147923	80169182	PARD6G-AS1|ENST00000587254.5	+	80147923,80162515,80169017	80148254,80162603,80169182	0.500000
prostate_gland_male_adult_54_years	chr12	10553364	10553365	10553364	+	High_confidence	13	14	14	1.123698	3.180833	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.642857
prostate_gland_male_adult_54_years	chr9	72577928	72577934	72577933	+	High_confidence	4	4	9	0.722377	2.500000	chr9	72577878	72578168	SINE|Alu|AluSz	-	chr9	72577938	72830511	TMC1|ENST00000645773.1	+	72577938,72616367,72627920,72648596,72688708,72694542,72740118,72742443,72751849,72754785,72772412,72788338,72789122,72791885,72792190,72805381,72816142,72820841,72826868,72830450	72578023,72616477,72628063,72648664,72688756,72694714,72740209,72742525,72751956,72754884,72772555,72788483,72789317,72792065,72792352,72805510,72816210,72821081,72826994,72830511	0.777778
prostate_gland_male_adult_54_years	chr17	75498246	75498258	75498246	+	RAMPAGE_only	5	5	10	0.802642	2.503258	chr17	75498201	75498275	LINE|L2|L2-1_Crp	+	chr17	75497165	75499073	TMEM94|ENST00000584694.1	+	75497165,75497780,75498261,75498443,75498628,75498911	75497198,75497862,75498323,75498538,75498722,75499073	0.500000
prostate_gland_male_adult_54_years	chr14	18980496	18980521	18980520	-	High_confidence	2	3	9	0.722377	2.750000	chr14	18980181	18980702	DNA|hAT-Charlie|MER1A	-	chr14	18977179	18980742	AL929601.3|ENST00000613990.1	-	18977179,18980347	18978870,18980742	0.888889
prostate_gland_male_adult_54_years	chr4	77636952	77636953	77636952	-	High_confidence	47	47	51	4.093472	5.094102	chr4	77636845	77637162	LTR|ERVL|LTR18C	-	chr4	77630646	77636983	STRG.20274.1	-	77630646,77634300,77636820	77632042,77634720,77636983	0.862745
prostate_gland_male_adult_54_years	chr2	106553894	106553907	106553894	+	High_confidence	9	9	25	2.006604	3.573661	chr2	106553773	106553985	DNA|hAT-Charlie|MER30	+	chr2	106553907	106557631	STRG.9645.1	+	106553907,106557304	106553992,106557631	0.960000
prostate_gland_male_adult_54_years	chr11	93499283	93499325	93499289	-	High_confidence	11	11	47	3.772416	4.466051	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	1.000000
prostate_gland_male_adult_54_years	chr4	184768320	184768399	184768320	-	RAMPAGE_only	5	5	35	2.809246	4.513646	chr4	184768056	184768306	SINE|MIR|MIRc	-	chr4	184755600	184766702	ACSL1|ENST00000503407.5	-	184755600,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621	184757265,184757706,184757920,184760500,184762493,184763255,184764925,184765986,184766702	0.857143
prostate_gland_male_adult_54_years	chr7	128984195	128984218	128984195	-	RAMPAGE_only	2	2	7	0.561849	2.521641	chr7	128983986	128984151	LINE|L1|L1M5	-	chr7	128957222	129054883	TNPO3|ENST00000471166.1	-	128957222,128967279,128970147,128972425,128974867,128975818,128978982,128979970,128982247,128984167,128986728,128989960,128991998,128993806,128997388,129000428,129001058,129005015,129014978,129016982,129017956,129054650	128957315,128967392,128970315,128972582,128974962,128975935,128979123,128980031,128982324,128984259,128986920,128990202,128992090,128993914,128997535,129000567,129001234,129005159,129015135,129017056,129018157,129054883	1.000000
prostate_gland_male_adult_54_years	chr2	102143554	102143574	102143573	+	High_confidence	4	6	12	0.963170	3.084963	chr2	102143519	102143634	SINE|MIR|MIRc	-	chr2	102142785	102179874	IL1R1|ENST00000410023.5	+	102142785,102153940,102157718,102164773,102165114,102166112,102168597,102171800,102172686,102174586,102175477,102176352	102143020,102154017,102157785,102165008,102165304,102166281,102168663,102171918,102172838,102174730,102175645,102179874	0.750000
prostate_gland_male_adult_54_years	chr4	89681504	89681505	89681504	+	High_confidence	19	22	24	1.926340	4.459432	chr4	89681260	89681677	LTR|ERV1|MER61C	+	chr4	89681511	89693925	STRG.20538.1	+	89681511,89685412,89691284,89692414	89681684,89687002,89691405,89693925	0.708333
prostate_gland_male_adult_54_years	chrX	126109724	126109765	126109724	+	High_confidence	3	3	8	0.642113	2.500000	chrX	126104124	126110137	LINE|L1|L1PA3	-	chrX	126109761	126115562	LOC101928495|NR_110409.1	+	126109761,126109913,126115201	126109804,126110148,126115562	0.750000
prostate_gland_male_adult_54_years	chr19	15604958	15604959	15604958	+	RAMPAGE_only	11	13	15	1.203962	3.456565	chr19	15604142	15605349	LTR|ERVL|LTR57-int	-	chr19	15611656	15612122	RPL23AP2|ENST00000471227.3	+	15611656	15612122	0.733333
right_atrium_auricular_region_female_adult_51_years	chr16	58421251	58421323	58421322	+	High_confidence	53	55	194	10.645802	6.731338	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421338	58462470	LINC02137|ENST00000561906.5	+	58421338,58435691,58461470,58462153	58421421,58435823,58461582,58462470	0.613402
right_atrium_auricular_region_female_adult_51_years	chr4	151687295	151687334	151687314	-	High_confidence	62	62	294	16.133329	6.737454	chr4	151687184	151687573	LINE|L2|L2b	+	chr4	151670943	151687083	GATB|ENST00000507592.5	-	151670943,151672761,151679812,151686907	151671302,151672896,151679891,151687083	0.911565
right_atrium_auricular_region_female_adult_51_years	chr12	91179462	91179526	91179462	-	High_confidence	1185	1212	4417	242.384067	7.273459	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91146165	91179513	DCN|ENST00000546391.5	-	91146165,91151653,91153095,91178341,91179361	91146252,91151792,91153189,91178585,91179513	0.500113
right_atrium_auricular_region_female_adult_51_years	chr5	83096128	83096154	83096128	+	RAMPAGE_only	5	5	22	1.207256	3.044913	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	0.954545
right_atrium_auricular_region_female_adult_51_years	chr8	86417214	86417236	86417235	+	High_confidence	18	18	44	2.414512	5.078639	chr8	86417268	86417372	DNA|hAT-Charlie|MER58D	+	chr8	86417222	86431665	WWP1|ENST00000521079.1	+	86417222,86425222,86427642,86430696,86431405,86431614	86417279,86425318,86427817,86430751,86431490,86431665	0.681818
right_atrium_auricular_region_female_adult_51_years	chr15	90762328	90762401	90762400	+	High_confidence	12	12	93	5.103400	5.314641	chr15	90762254	90762815	LINE|L2|L2b	-	chr15	90762395	90811327	BLM|ENST00000560136.5	+	90762395,90762965,90766909,90769132,90769437,90782821,90784920,90790648,90794166,90798189,90803520,90804166,90809136,90811204	90762422,90763157,90767023,90769231,90769586,90782928,90785081,90790844,90794357,90798337,90803720,90804359,90809259,90811327	0.849462
right_atrium_auricular_region_female_adult_51_years	chr15	62894552	62894583	62894572	+	RAMPAGE_only	6	6	15	0.823129	3.521641	chr15	62894534	62894826	SINE|Alu|AluSx3	+	chr15	62895811	62899543	AC103740.2|ENST00000557900.1	+	62895811,62898650	62896143,62899543	0.933333
right_atrium_auricular_region_female_adult_51_years	chr4	81154213	81154222	81154213	-	High_confidence	5	6	10	0.548753	2.503258	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.900000
right_atrium_auricular_region_female_adult_51_years	chr3	14521283	14521308	14521283	-	RAMPAGE_only	6	7	17	0.932880	3.625000	chr3	14521091	14521498	LINE|L2|L2a	+	chr3	14489110	14540343	GRIP2|NM_001080423.3	-	14489110,14494842,14496416,14503565,14505614,14506800,14507560,14509819,14511164,14511412,14512776,14513664,14514291,14517063,14517771,14520109,14520389,14521641,14522999,14523611,14524392,14525436,14525850,14540268	14493826,14494989,14496560,14503671,14505789,14506980,14507700,14509964,14511310,14511479,14512857,14513810,14514478,14517213,14517897,14520279,14520537,14521787,14523075,14523698,14524538,14525572,14525931,14540343	0.823529
right_atrium_auricular_region_female_adult_51_years	chr2	206161376	206161455	206161454	+	High_confidence	7	7	47	2.579138	4.345546	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	0.872340
right_atrium_auricular_region_female_adult_51_years	chr5	147382888	147382900	147382888	+	High_confidence	4	4	12	0.658503	2.918296	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.833333
right_atrium_auricular_region_female_adult_51_years	chr8	26366339	26366396	26366395	+	RAMPAGE_only	5	5	19	1.042630	3.681881	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	1.000000
right_atrium_auricular_region_female_adult_51_years	chr7	45052094	45052095	45052094	-	RAMPAGE_only	9	9	9	0.493877	2.725481	chr7	45051989	45052332	LTR|ERVL|ERV3-16A3_I-int	-	chr7	44138863	44141332	MYL7|ENST00000223364.7	-	44138863,44139520,44139781,44140322,44140711,44140960,44141302	44139022,44139569,44139860,44140427,44140787,44141074,44141332	1.000000
right_atrium_auricular_region_female_adult_51_years	chr11	19209819	19209849	19209846	+	RAMPAGE_only	8	9	33	1.810884	4.597276	chr11	19209477	19210094	LINE|L2|L2c	+	chr11	19216567	19281524	STRG.20349.1	+	19216567,19252244,19281249	19217006,19252291,19281524	0.545455
right_atrium_auricular_region_female_adult_51_years	chrX	53546444	53546475	53546444	-	RAMPAGE_only	2	2	7	0.384127	2.521641	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53542442	53547809	HUWE1|ENST00000468322.2	-	53542442,53543885,53545028,53546435,53546703,53547672	53542539,53543968,53545161,53546592,53546825,53547809	0.571429
right_atrium_auricular_region_female_adult_51_years	chr14	44912556	44912601	44912600	-	High_confidence	3	3	9	0.493877	2.750000	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.777778
right_atrium_auricular_region_female_adult_51_years	chr1	21876237	21876243	21876237	-	RAMPAGE_only	10	10	19	1.042630	3.614369	chr1	21876092	21876241	LINE|L2|L2c	+	chr1	21865716	21896271	STRG.378.4	-	21865716,21868884,21869465,21870212,21870833,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174	21865809,21868968,21869663,21870314,21870872,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896271	0.894737
right_atrium_auricular_region_female_adult_51_years	chr12	643627	643636	643635	-	High_confidence	29	30	101	5.542402	4.991850	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.514851
right_atrium_auricular_region_female_adult_51_years	chr8	144063554	144063562	144063554	-	High_confidence	11	12	19	1.042630	3.431624	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144058886	144063965	OPLAH|ENST00000567871.2	-	144058886,144058979,144059598,144059861,144063699	144058896,144059079,144059790,144060085,144063965	1.000000
right_atrium_auricular_region_female_adult_51_years	chr2	109173535	109173554	109173553	+	RAMPAGE_only	7	7	14	0.768254	3.085055	chr2	109173517	109173626	DNA|hAT-Charlie|MER58B	+	chr2	109129540	109504636	SH3RF3|NM_001099289.2	+	109129540,109347673,109371585,109398589,109419538,109432500,109436892,109449169,109490604,109501502	109130113,109347949,109371681,109398943,109419642,109432671,109437146,109449489,109490936,109504636	0.928571
right_atrium_auricular_region_female_adult_51_years	chr5	148453128	148453139	148453128	+	High_confidence	30	30	50	2.743763	4.881328	chr5	148452965	148453486	LTR|ERVL|LTR50	+	chr5	148452784	148559987	STRG.11454.1	+	148452784,148468919,148550084,148559574	148453172,148469017,148550351,148559987	0.880000
right_atrium_auricular_region_female_adult_51_years	chr15	70942791	70942811	70942791	+	RAMPAGE_only	10	10	30	1.646258	4.123231	chr15	70942582	70942814	LTR|ERV1|MER4E1	-	chr15	70936534	71008438	LRRC49|ENST00000559806.5	+	70936534,70963784,70980100,70984093,71008378	70936822,70963932,70980184,70984257,71008438	0.866667
right_atrium_auricular_region_female_adult_51_years	chr19	38376013	38376033	38376013	+	RAMPAGE_only	5	5	32	1.756009	4.253236	chr19	38375972	38376110	SINE|MIR|MIR	-	chr19	38374758	38383824	PSMD8|ENST00000602911.5	+	38374758,38376159,38376351,38379239,38380898,38382116,38383252	38374961,38376232,38376454,38379405,38380999,38382228,38383824	0.937500
right_atrium_auricular_region_female_adult_51_years	chr9	38650188	38650222	38650221	+	High_confidence	151	158	629	34.516545	5.683392	chr9	38650217	38650807	LINE|L2|L2b	-	chr9	38650256	38662717	AL591543.1|ENST00000642095.1	+	38650256,38658688	38650376,38662717	0.985692
right_atrium_auricular_region_female_adult_51_years	chr9	83560207	83560247	83560227	-	RAMPAGE_only	11	11	25	1.371882	2.781454	chr9	83560161	83560431	LTR|ERVL-MaLR|MLT1H	+	chr9	83242989	83538546	FRMD3|ENST00000376438.5	-	83242989,83248054,83290602,83298747,83299111,83309535,83310484,83311886,83313659,83335515,83343189,83349678,83372912,83389603,83538084	83243215,83248516,83290727,83298816,83299186,83309624,83310548,83311975,83313747,83335639,83343287,83349757,83372955,83389708,83538546	0.960000
right_atrium_auricular_region_female_adult_51_years	chr1	21227167	21227213	21227167	-	RAMPAGE_only	3	3	13	0.713379	3.418296	chr1	21227023	21227146	SINE|Alu|AluJr4	-	chr1	21219813	21222081	ECE1|ENST00000531334.1	-	21219813,21221746	21220131,21222081	0.615385
right_atrium_auricular_region_female_adult_51_years	chr5	150640347	150640359	150640347	+	High_confidence	6	6	10	0.548753	3.121928	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	1.000000
right_atrium_auricular_region_female_adult_51_years	chr16	30499550	30499570	30499550	-	High_confidence	7	7	34	1.865759	4.113362	chr16	30499510	30499629	SINE|MIR|MIR1_Amn	+	chr16	30498765	30499554	AC116348.2|ENST00000563751.1	-	30498765,30499363	30499151,30499554	0.911765
right_atrium_auricular_region_female_adult_51_years	chr7	2242922	2242923	2242922	+	High_confidence	9	9	9	0.493877	2.725481	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
right_atrium_auricular_region_female_adult_51_years	chr2	96303166	96303249	96303166	-	RAMPAGE_only	7	7	33	1.810884	4.415458	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
right_atrium_auricular_region_female_adult_51_years	chr9	92536703	92536736	92536703	-	High_confidence	6	6	11	0.603628	3.095795	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	1.000000
right_atrium_auricular_region_female_adult_51_years	chr16	4239748	4239749	4239748	-	High_confidence	6	6	7	0.384127	2.584963	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.714286
right_atrium_auricular_region_female_adult_51_years	chr6	130978732	130978739	130978738	-	High_confidence	6	6	10	0.548753	2.947703	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.700000
right_atrium_auricular_region_female_adult_51_years	chr6	118514488	118514499	118514488	-	RAMPAGE_only	6	6	17	0.932880	3.616875	chr6	118514243	118514552	SINE|Alu|AluSz	+	chr6	118460771	118537661	STRG.13134.2	-	118460771,118469071,118470536,118479870,118480395,118481778,118483705,118491685,118511297,118523801,118537523	118465568,118469303,118470644,118479921,118480513,118481933,118483858,118491865,118511415,118523920,118537661	0.882353
right_atrium_auricular_region_female_adult_51_years	chr15	75879161	75879162	75879161	+	RAMPAGE_only	10	12	14	0.768254	2.873141	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75868950	75899577	UBE2Q2|ENST00000567921.1	+	75868950,75873427,75883365,75896994,75899426	75869010,75873568,75883424,75897061,75899577	0.928571
right_atrium_auricular_region_female_adult_51_years	chr20	35506136	35506141	35506136	+	RAMPAGE_only	4	4	8	0.439002	2.521641	chr20	35505794	35506149	LINE|L2|L2b	-	chr20	35502905	35511640	CEP250|ENST00000422671.1	+	35502905,35507737,35508034,35511362	35505005,35507851,35508190,35511640	0.625000
right_atrium_auricular_region_female_adult_51_years	chr6	137218765	137218822	137218821	-	High_confidence	26	26	46	2.524262	4.460600	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.956522
right_atrium_auricular_region_female_adult_51_years	chr17	29667414	29667465	29667417	-	RAMPAGE_only	18	20	87	4.774148	5.294963	chr17	29667384	29667678	DNA|hAT-Charlie|MER1B	+	chr17	29630799	29761417	SSH2|ENST00000649863.1	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677738,29684684,29695523,29703062,29761417	0.931034
right_atrium_auricular_region_female_adult_51_years	chr3	69237182	69237186	69237185	-	RAMPAGE_only	4	4	10	0.548753	2.846439	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69169989	69386073	FRMD4B|ENST00000398540.7	-	69169989,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69195230,69196254,69196899,69198697,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69385827	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195141,69195364,69196396,69197038,69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69386073	0.600000
right_atrium_auricular_region_female_adult_51_years	chr4	67077362	67077391	67077366	-	RAMPAGE_only	48	51	176	9.658047	5.328029	chr4	67077326	67077544	SINE|MIR|MIRb	+	chr4	66862943	66868336	STRG.8342.1	-	66862943,66868058	66863117,66868336	0.829545
right_atrium_auricular_region_female_adult_51_years	chr15	34988764	34988792	34988764	-	High_confidence	10	10	38	2.085260	4.471354	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.947368
right_atrium_auricular_region_female_adult_51_years	chr9	134527024	134527028	134527024	+	High_confidence	5	5	9	0.493877	2.947703	chr9	134526943	134527053	LINE|L2|L2b	-	chr9	134527181	134545244	AL669970.3|ENST00000435284.2	+	134527181,134544919	134527284,134545244	1.000000
right_atrium_auricular_region_female_adult_51_years	chr2	206847099	206847107	206847099	+	RAMPAGE_only	18	18	50	2.743763	4.515234	chr2	206847063	206847472	LINE|L2|L2c	-	chr2	206939553	206969474	CPO|NM_173077.2	+	206939553,206949616,206955462,206958300,206959630,206960851,206962411,206968262,206969173	206939667,206949713,206955564,206958405,206959741,206960942,206962614,206968347,206969474	0.700000
right_atrium_auricular_region_female_adult_51_years	chr6	73169397	73169440	73169403	+	RAMPAGE_only	2	2	12	0.658503	3.459432	chr6	73169288	73169503	SINE|tRNA-RTE|MamSINE1	+	chr6	72622171	73195454	KCNQ5|ENST00000629977.2	+	72622171,73003907,73041935,73077321,73077761,73105256,73111307,73120482,73133420,73169745,73190572,73192564,73194451	72622587,73003998,73042062,73077497,73077887,73105367,73111403,73120577,73133641,73169854,73190704,73192691,73195454	0.750000
right_atrium_auricular_region_female_adult_51_years	chr1	147760601	147760609	147760601	-	High_confidence	178	182	310	17.011334	6.291748	chr1	147760317	147760652	LINE|L2|L2c	+	chr1	147756198	147760606	GJA5|ENST00000579774.2	-	147756198,147760498	147759271,147760606	0.964516
right_atrium_auricular_region_female_adult_51_years	chr4	47831339	47831341	47831339	+	High_confidence	871	1066	1389	76.221750	7.941493	chr4	47831064	47831545	LINE|RTE-BovB|MamRTE1	+	chr4	47831344	47896848	LOC101927179|NR_125880.1	+	47831344,47875176,47896541	47831508,47875331,47896848	0.578834
right_atrium_auricular_region_female_adult_51_years	chr2	49832135	49832136	49832135	-	High_confidence	29	29	34	1.865759	4.488506	chr2	49831961	49832181	LTR|ERVL-MaLR|THE1D	-	chr2	49815478	49832169	STRG.3625.1	-	49815478,49820305,49832044	49815686,49820445,49832169	0.735294
right_atrium_auricular_region_female_adult_51_years	chr2	159754068	159754094	159754087	+	RAMPAGE_only	6	6	20	1.097505	4.037401	chr2	159753563	159755683	LINE|L2|L2c	-	chr2	159752489	159767960	MARCH7|ENST00000420397.1	+	159752489,159759225,159762879,159767283	159752571,159759335,159762993,159767960	0.600000
right_atrium_auricular_region_female_adult_51_years	chr22	31120030	31120072	31120071	-	High_confidence	7	7	23	1.262131	4.095795	chr22	31120047	31120139	SINE|MIR|MIRb	+	chr22	31104771	31120069	SELENOM|ENST00000402395.5	-	31104771,31105207,31105657,31105929,31107376,31107683,31119882	31105128,31105286,31105692,31105965,31107533,31107886,31120069	0.782609
right_atrium_auricular_region_female_adult_51_years	chr4	64279449	64279688	64279449	-	RAMPAGE_only	90	99	492	26.998633	5.935792	chr4	64279257	64279568	SINE|Alu|AluJr	-	chr4	64277701	64409398	STRG.8359.1	-	64277701,64281040,64281473,64289709,64299973,64305165,64309825,64314647,64322688,64328511,64375171,64409117	64280199,64281086,64281559,64289767,64300017,64305238,64309931,64314763,64322792,64328556,64375223,64409398	0.995935
right_atrium_auricular_region_female_adult_51_years	chr4	158841765	158841813	158841765	+	RAMPAGE_only	19	19	70	3.841269	5.434580	chr4	158841566	158842041	LTR|ERVL|LTR75	+	chr4	158832079	158908049	STRG.9240.2	+	158832079,158833527,158833800,158835404,158851320,158859056,158859577,158861341,158861606,158868101,158870312,158891445,158895749,158904465	158832138,158833628,158833890,158835476,158851450,158859258,158859666,158861488,158861776,158869428,158870469,158891646,158895865,158908049	0.914286
right_atrium_auricular_region_female_adult_51_years	chr11	58578102	58578133	58578132	-	High_confidence	11	20	35	1.920634	4.233640	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.857143
right_atrium_auricular_region_female_adult_51_years	chrX	96502710	96502729	96502728	+	High_confidence	15	16	43	2.359637	4.076518	chrX	96501869	96502889	LINE|L1|L1PA16	-	chrX	96502739	96505350	STRG.33988.1	+	96502739,96503015,96504883	96502913,96503142,96505350	0.860465
right_atrium_auricular_region_female_adult_51_years	chr3	63146586	63146622	63146621	+	High_confidence	5	6	14	0.768254	2.835238	chr3	63146255	63146817	LTR|ERVL|MLT2B3	+	chr3	63146333	63169692	STRG.6289.4	+	63146333,63148679,63167160	63146729,63148801,63169692	1.000000
right_atrium_auricular_region_female_adult_51_years	chr19	34860575	34860595	34860575	-	High_confidence	3	3	8	0.439002	2.750000	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.500000
right_atrium_auricular_region_female_adult_51_years	chr11	123061178	123061323	123061256	-	High_confidence	12	23	137	7.517912	5.948672	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.992701
right_atrium_auricular_region_female_adult_51_years	chr6	6738944	6738973	6738944	-	High_confidence	3	3	9	0.493877	2.500000	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6704670	6739030	AL031123.1|ENST00000648205.1	-	6704670,6710871,6711696,6738908	6705078,6711059,6711858,6739030	0.888889
right_atrium_auricular_region_female_adult_51_years	chr8	93698580	93698581	93698580	+	High_confidence	11	12	15	0.823129	3.373557	chr8	93698481	93698872	LTR|ERVL-MaLR|MLT1H2	+	chr8	93698560	93709779	FAM92A|ENST00000523475.5	+	93698560,93701223,93703619,93704908,93708010,93709770	93698747,93701458,93703688,93705010,93708016,93709779	1.000000
right_atrium_auricular_region_female_adult_51_years	chr6	141403304	141403396	141403371	+	High_confidence	38	38	168	9.219045	5.780537	chr6	141403283	141405210	LTR|ERV1|LOR1-int	+	chr6	141403158	141451006	STRG.13353.1	+	141403158,141403569,141446008	141403489,141404274,141451006	0.928571
right_atrium_auricular_region_female_adult_51_years	chr3	63146380	63146475	63146474	+	High_confidence	494	501	2693	147.779102	5.510205	chr3	63146255	63146817	LTR|ERVL|MLT2B3	+	chr3	63146333	63237394	STRG.6289.2	+	63146333,63146623,63148679,63200410,63200599,63210576,63232226,63237214	63146459,63146729,63148801,63200485,63200661,63210683,63232344,63237394	0.956554
right_atrium_auricular_region_female_adult_51_years	chr3	151539250	151539288	151539265	-	RAMPAGE_only	3	3	9	0.493877	2.750000	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.888889
right_atrium_auricular_region_female_adult_51_years	chr2	119356347	119356375	119356349	-	RAMPAGE_only	2	3	9	0.493877	2.500000	chr2	119356120	119356424	SINE|Alu|AluSx1	+	chr2	119302443	119366682	C2orf76|ENST00000409877.5	-	119302443,119311621,119317465,119321153,119339826,119340158,119366356	119302548,119311703,119317503,119321204,119339971,119340361,119366682	0.666667
right_atrium_auricular_region_female_adult_51_years	chr1	149229367	149229401	149229367	-	RAMPAGE_only	12	13	43	2.359637	4.877203	chr1	149229335	149229457	SINE|MIR|MIR3	+	chr1	149185328	149240759	STRG.1902.2	-	149185328,149197995,149198360,149201013,149240376	149190531,149198171,149198484,149201090,149240759	1.000000
right_atrium_auricular_region_female_adult_51_years	chr2	113117970	113117971	113117970	+	High_confidence	35	40	50	2.743763	4.333757	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.940000
right_atrium_auricular_region_female_adult_51_years	chr1	24151504	24151543	24151542	+	High_confidence	33	35	118	6.475282	5.116102	chr1	24151159	24151642	LTR|ERV1|LTR10D	-	chr1	24151506	24160407	STRG.393.1	+	24151506,24155011,24157254	24151739,24155192,24160407	0.983051
right_atrium_auricular_region_female_adult_51_years	chr7	123604146	123604147	123604146	+	RAMPAGE_only	5	6	7	0.384127	2.521641	chr7	123603369	123604299	LINE|CR1|L3	+	chr7	123601866	123637897	ASB15|NM_001290258.1	+	123601866,123604031,123608593,123614500,123616220,123616363,123617578,123624568,123627109,123628863,123629965,123636808	123601914,123604212,123608654,123614609,123616273,123616495,123617737,123624814,123627281,123629434,123630119,123637897	1.000000
right_atrium_auricular_region_female_adult_51_years	chr14	50756708	50756737	50756736	-	RAMPAGE_only	2	2	10	0.548753	2.947703	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.900000
right_atrium_auricular_region_female_adult_51_years	chr5	148453023	148453035	148453031	+	High_confidence	28	30	95	5.213151	5.795184	chr5	148452965	148453486	LTR|ERVL|LTR50	+	chr5	148452784	148559987	STRG.11454.1	+	148452784,148468919,148550084,148559574	148453172,148469017,148550351,148559987	0.926316
right_atrium_auricular_region_female_adult_51_years	chr3	134485443	134485490	134485455	-	High_confidence	7	7	66	3.621768	4.928504	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.575758
right_atrium_auricular_region_female_adult_51_years	chr6	79631273	79631329	79631328	+	High_confidence	28	34	102	5.597278	5.625155	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.980392
right_atrium_auricular_region_female_adult_51_years	chr7	113918672	113918730	113918672	-	High_confidence	7	7	42	2.304761	4.413607	chr7	113918643	113918708	DNA|hAT-Ac|OldhAT1	-	chr7	113879770	113918996	PPP1R3A|ENST00000284602.1	-	113879770,113882038,113882261,113918214,113918818	113880125,113882163,113882320,113918297,113918996	0.738095
right_atrium_auricular_region_female_adult_51_years	chr13	43053941	43054008	43053971	+	RAMPAGE_only	39	44	109	5.981404	5.086972	chr13	43052716	43054750	LINE|L1|L1PB1	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.944954
right_atrium_auricular_region_female_adult_51_years	chr3	42719355	42719409	42719355	+	High_confidence	6	6	42	2.304761	4.043545	chr3	42718677	42719381	LTR|ERV1|MER41-int	+	chr3	42719413	42723064	STRG.5957.1	+	42719413,42721527,42722148	42719633,42721650,42723064	0.976190
right_atrium_auricular_region_female_adult_51_years	chr11	17225036	17225068	17225067	+	RAMPAGE_only	5	5	12	0.658503	3.188722	chr11	17224821	17225165	LINE|L2|L2a	+	chr11	17260339	17349980	NUCB2|ENST00000646648.1	+	17260339,17269184,17276007,17282788,17295323,17296103,17301743,17309571,17310824,17311184,17311871,17312027,17315385,17330126,17330901,17337347,17349344	17260501,17269331,17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17337534,17349980	1.000000
right_atrium_auricular_region_female_adult_51_years	chr11	108142456	108142547	108142517	+	RAMPAGE_only	6	7	46	2.524262	4.387374	chr11	108142554	108142845	SINE|Alu|AluJo	+	chr11	108146120	108147588	ACAT1|ENST00000533597.1	+	108146120,108147269	108146359,108147588	1.000000
right_atrium_auricular_region_female_adult_51_years	chr8	116648841	116648880	116648874	-	RAMPAGE_only	4	4	15	0.823129	3.106891	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
right_atrium_auricular_region_female_adult_51_years	chr2	171936250	171936265	171936264	+	RAMPAGE_only	6	6	18	0.987755	3.852169	chr2	171935907	171936640	LINE|L2|L2	-	chr2	171922606	171983623	HAT1|ENST00000494601.5	+	171922606,171925536,171946707,171952880,171965337,171965786,171966408,171966842,171976156,171979246,171983184	171924927,171925641,171946783,171953001,171965517,171965908,171966513,171966949,171976308,171979363,171983623	0.888889
right_atrium_auricular_region_female_adult_51_years	chr10	72355126	72355169	72355145	-	High_confidence	3	3	10	0.548753	3.121928	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
right_atrium_auricular_region_female_adult_51_years	chr22	46575640	46575744	46575640	+	High_confidence	20	21	112	6.146030	5.722443	chr22	46575415	46575643	LINE|L2|L2c	-	chr22	46576011	46637936	GRAMD4|ENST00000447351.5	+	46576011,46626750,46637839	46576078,46626961,46637936	0.544643
right_atrium_auricular_region_female_adult_51_years	chr5	156708012	156708034	156708012	+	RAMPAGE_only	3	3	15	0.823129	3.664498	chr5	156707915	156708257	DNA|hAT-Charlie|MER113	+	chr5	156326756	156759604	SGCD|ENST00000337851.8	+	156326756,156329533,156344488,156508600,156589230,156594931,156647463,156757580,156759216	156327232,156329579,156344677,156508702,156589318,156595051,156647536,156757704,156759604	0.733333
right_atrium_auricular_region_female_adult_51_years	chr1	212792448	212792473	212792469	-	High_confidence	8	12	31	1.701133	4.079376	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.903226
right_atrium_auricular_region_female_adult_51_years	chr6	12103409	12103425	12103424	+	RAMPAGE_only	7	7	12	0.658503	3.251629	chr6	12103250	12103431	SINE|MIR|MIRb	-	chr6	12012490	12164999	HIVEP1|NM_002114.3	+	12012490,12015525,12089183,12119889,12129758,12130766,12135790,12161438,12163282	12012566,12015668,12089237,12125870,12129892,12130942,12135892,12161929,12164999	0.500000
right_atrium_auricular_region_female_adult_51_years	chr8	32927967	32927977	32927976	+	High_confidence	82	91	171	9.383671	6.014730	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927978	33046649	STRG.15940.1	+	32927978,32996200,33041634,33044366	32928093,32996316,33041771,33046649	0.947368
right_atrium_auricular_region_female_adult_51_years	chrX	53585017	53585028	53585027	-	RAMPAGE_only	5	5	11	0.603628	2.921928	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532789	53590592	STRG.33718.4	-	53532789,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575785,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590592	0.909091
right_atrium_auricular_region_female_adult_51_years	chr9	129488803	129488877	129488856	+	High_confidence	16	16	52	2.853514	4.309701	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.961538
right_atrium_auricular_region_female_adult_51_years	chr7	103353930	103353956	103353930	+	High_confidence	3	3	9	0.493877	2.725481	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	1.000000
right_atrium_auricular_region_female_adult_51_years	chr10	71269996	71269997	71269996	+	RAMPAGE_only	11	11	17	0.932880	3.625000	chr10	71269656	71270067	LINE|L2|L2a	-	chr10	71212926	71302864	UNC5B|ENST00000373192.4	+	71212926,71279820,71284719,71285325,71286688,71287597,71288567,71290914,71291431,71292466,71293404,71293699,71295810,71296577,71297908,71299111	71213064,71280045,71284863,71285429,71286869,71287765,71288732,71291109,71291821,71292554,71293573,71293933,71295960,71296742,71298090,71302864	0.588235
right_atrium_auricular_region_female_adult_51_years	chr17	47067487	47067513	47067498	-	High_confidence	269	293	934	51.253502	5.999493	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.864026
right_atrium_auricular_region_female_adult_51_years	chr5	62432252	62432282	62432252	+	RAMPAGE_only	2	2	6	0.329252	2.584963	chr5	62432201	62432725	LINE|L1|L1M4b	-	chr5	62418883	62627704	IPO11|ENST00000409296.7	+	62418883,62437273,62442982,62449926,62451729,62467130,62470249,62474415,62476682,62483100,62484009,62485418,62487770,62489301,62490114,62493997,62504666,62504857,62506240,62515387,62526141,62530708,62536701,62537208,62550366,62551222,62561135,62591576,62601763,62627153	62419127,62437417,62443083,62449999,62451933,62467263,62470308,62474464,62476753,62483293,62484162,62485462,62487861,62489349,62490220,62494124,62504700,62504898,62506357,62515501,62526257,62530785,62536781,62537289,62550462,62551336,62561257,62591672,62601848,62627704	1.000000
right_atrium_auricular_region_female_adult_51_years	chr14	38948245	38948246	38948245	-	High_confidence	5	5	7	0.384127	2.521641	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	1.000000
right_atrium_auricular_region_female_adult_51_years	chr15	25346023	25346046	25346023	-	High_confidence	41	42	142	7.792288	5.792554	chr15	25345979	25347018	LINE|L1|L1ME2	+	chr15	25333727	25346031	UBE3A|ENST00000636667.1	-	25333727,25340084,25345979	25339257,25340228,25346031	0.985915
right_atrium_auricular_region_female_adult_51_years	chr5	167934703	167934726	167934703	+	High_confidence	3	3	10	0.548753	2.921928	chr5	167934647	167934759	DNA|hAT-Ac|OldhAT1	-	chr5	167934861	168047462	TENM2|ENST00000518693.1	+	167934861,167952587,167992943,168047426	167934920,167952822,167993182,168047462	1.000000
right_atrium_auricular_region_female_adult_51_years	chr11	77175226	77175260	77175226	+	High_confidence	3	3	12	0.658503	2.855389	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175430	77181568	STRG.21094.1	+	77175430,77177548,77179044,77179734,77180373,77181379	77175464,77177643,77179129,77179953,77180481,77181568	0.583333
right_atrium_auricular_region_female_adult_51_years	chr8	110536263	110536270	110536263	+	High_confidence	4	4	12	0.658503	3.418296	chr8	110536100	110536442	LINE|L2|L2a	-	chr8	110536260	110636488	STRG.16607.2	+	110536260,110564235,110627365,110632350	110536459,110564278,110627457,110636488	0.833333
right_atrium_auricular_region_female_adult_51_years	chr7	102822437	102822461	102822458	-	RAMPAGE_only	8	11	30	1.646258	4.208966	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.800000
right_atrium_auricular_region_female_adult_51_years	chr6	141403964	141404045	141404044	+	High_confidence	15	16	46	2.524262	4.504522	chr6	141403283	141405210	LTR|ERV1|LOR1-int	+	chr6	141403158	141451006	STRG.13353.1	+	141403158,141403569,141446008	141403489,141404274,141451006	0.630435
right_atrium_auricular_region_female_adult_51_years	chr9	129489090	129489141	129489140	+	High_confidence	3	3	11	0.603628	3.027169	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	1.000000
right_atrium_auricular_region_female_adult_51_years	chr6	162234780	162234819	162234816	+	High_confidence	40	41	132	7.243536	4.703300	chr6	162234836	162234947	SINE|MIR|MIR3	+	chr6	162234819	162239986	STRG.13588.1	+	162234819,162239452	162234918,162239986	0.962121
right_atrium_auricular_region_female_adult_51_years	chr1	207331289	207331291	207331289	+	RAMPAGE_only	3	6	8	0.439002	2.750000	chr1	207331329	207331468	DNA|hAT-Charlie|Charlie4z	+	chr1	207326831	207373252	CD55|ENST00000635614.2	+	207326831,207331107,207336692,207337328,207339396,207367369,207370708,207372768	207326837,207331296,207336818,207337409,207339417,207367487,207370834,207373252	0.750000
right_atrium_auricular_region_female_adult_51_years	chr12	8681673	8681677	8681676	+	High_confidence	7	7	13	0.713379	3.546594	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	1.000000
right_atrium_auricular_region_female_adult_51_years	chr1	212234683	212234694	212234683	-	High_confidence	3	3	11	0.603628	2.646439	chr1	212234586	212234675	DNA|hAT-Charlie|Charlie24	-	chr1	212225277	212234736	LOC101929541|NR_125983.1	-	212225277,212230202,212234502	212225513,212230259,212234736	0.909091
right_atrium_auricular_region_female_adult_51_years	chr2	45192665	45192666	45192665	-	RAMPAGE_only	14	14	15	0.823129	3.521641	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	0.866667
right_atrium_auricular_region_female_adult_51_years	chr17	4143196	4143215	4143199	+	High_confidence	185	190	405	22.224484	6.110829	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.982716
right_atrium_auricular_region_female_adult_51_years	chr2	219421089	219421090	219421089	+	RAMPAGE_only	7	7	9	0.493877	3.169925	chr2	219420988	219421091	SINE|MIR|MIRc	+	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	1.000000
right_atrium_auricular_region_female_adult_51_years	chr2	159085852	159085853	159085852	+	RAMPAGE_only	19	24	28	1.536508	4.180451	chr2	159085493	159085875	LTR|ERVL-MaLR|MSTB	-	chr2	158968670	159091804	STRG.4619.3	+	158968670,159001079,159065895,159089583	158968782,159001189,159065971,159091804	0.928571
right_atrium_auricular_region_female_adult_51_years	chr17	77127872	77127877	77127872	+	High_confidence	69	70	126	6.914284	5.837522	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.880952
right_atrium_auricular_region_female_adult_51_years	chr10	70324458	70324482	70324458	-	RAMPAGE_only	7	7	17	0.932880	3.625000	chr10	70324412	70324716	LTR|ERVL-MaLR|MLT1M	+	chr10	70298969	70376779	LRRC20|NM_001278213.1	-	70298969,70323862,70376451,70376728	70301508,70324030,70376596,70376779	0.823529
right_atrium_auricular_region_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	36	36	36	1.975510	3.439906	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
right_atrium_auricular_region_female_adult_51_years	chr20	33441305	33441338	33441310	-	RAMPAGE_only	5	13	27	1.481632	3.856196	chr20	33441089	33441319	SINE|MIR|MIR	-	chr20	33407954	33443892	SNTA1|ENST00000217381.2	-	33407954,33408700,33410134,33412295,33412574,33417718,33438840,33443310	33408599,33408888,33410331,33412426,33412782,33417923,33439026,33443892	0.592593
right_atrium_auricular_region_female_adult_51_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	12	12	12	0.658503	3.022055	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.916667
right_atrium_auricular_region_female_adult_51_years	chr1	39026130	39026136	39026135	+	High_confidence	9	9	24	1.317006	3.788755	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.875000
right_atrium_auricular_region_female_adult_51_years	chr10	92826784	92826851	92826850	+	High_confidence	3	3	17	0.932880	3.616875	chr10	92826510	92827023	LINE|L2|L2a	-	chr10	92826830	93059494	EXOC6|NM_001013848.3	+	92826830,92834712,92893348,92894793,92894929,92899598,92909426,92915757,92919981,92928338,92934143,92934309,92935813,92940726,92948273,92952272,92954629,92955579,92974052,92997473,93014193,93056923,93058222	92826944,92834824,92893520,92894841,92895020,92899644,92909631,92915913,92920050,92928422,92934190,92934430,92935885,92940824,92948379,92952382,92954741,92955714,92974232,92997615,93014267,93057036,93059494	0.941176
right_atrium_auricular_region_female_adult_51_years	chr11	17282895	17282930	17282895	+	RAMPAGE_only	2	2	13	0.713379	3.251629	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.923077
right_atrium_auricular_region_female_adult_51_years	chr11	46648725	46648727	46648726	+	High_confidence	8	10	14	0.768254	3.392747	chr11	46648496	46648799	SINE|Alu|AluY	+	chr11	46648726	46657618	ATG13|ENST00000525850.1	+	46648726,46649136,46650176,46656232,46657094,46657523	46648867,46649183,46650317,46656273,46657191,46657618	0.785714
right_atrium_auricular_region_female_adult_51_years	chr10	89516209	89516227	89516219	-	High_confidence	6	8	20	1.097505	3.471354	chr10	89516159	89516235	LINE|L2|L2a	+	chr10	89437334	89516211	STRG.19560.3	-	89437334,89441107,89443755,89462378,89516093	89439183,89441251,89443859,89462624,89516211	0.950000
right_atrium_auricular_region_female_adult_51_years	chr4	139509351	139509388	139509363	-	RAMPAGE_only	3	5	18	0.987755	3.794653	chr4	139509339	139509538	DNA|hAT-Charlie|Charlie30a	-	chr4	139506037	139556769	SETD7|NM_030648.3	-	139506037,139517884,139520276,139523353,139529030,139533164,139546919,139556097	139511843,139518042,139520394,139523435,139529220,139533366,139547049,139556769	1.000000
right_atrium_auricular_region_female_adult_51_years	chr8	90980749	90980750	90980749	-	RAMPAGE_only	7	8	10	0.548753	2.947703	chr8	90980689	90980902	SINE|Alu|AluJo	-	chr8	90958477	90985257	C8orf88|NM_001190972.1	-	90958477,90960741,90971065,90978578,90980362,90985113	90959030,90960848,90971141,90978652,90980461,90985257	0.900000
right_atrium_auricular_region_female_adult_51_years	chr9	72874106	72874135	72874106	-	High_confidence	4	4	15	0.823129	3.521641	chr9	72873937	72874322	LTR|ERVL-MaLR|MSTA	-	chr9	72871727	72874109	LINC01474|NR_121120.1	-	72871727,72872108,72873026,72874015	72872020,72872231,72873155,72874109	0.933333
right_atrium_auricular_region_female_adult_51_years	chr3	128369561	128369576	128369561	+	RAMPAGE_only	3	3	11	0.603628	3.277613	chr3	128369587	128369654	SINE|MIR|MIRb	+	chr3	128153500	128408642	EEFSEC|ENST00000483457.1	+	128153500,128246835,128262127,128341232,128408068	128153823,128247043,128262224,128341889,128408642	1.000000
right_atrium_auricular_region_female_adult_51_years	chr1	100268260	100268281	100268280	+	RAMPAGE_only	26	27	42	2.304761	3.572346	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.976190
right_atrium_auricular_region_female_adult_51_years	chrX	5726324	5726325	5726324	-	High_confidence	27	33	35	1.920634	3.850572	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.885714
right_atrium_auricular_region_female_adult_51_years	chr2	29015869	29015875	29015869	-	High_confidence	18	19	55	3.018140	5.147640	chr2	29015569	29016419	LINE|L2|L2a	+	chr2	29014826	29015673	STRG.3438.1	-	29014826	29015673	0.800000
right_atrium_auricular_region_female_adult_51_years	chr1	56645735	56645752	56645743	+	High_confidence	6	6	16	0.878004	3.280639	chr1	56645691	56645853	SINE|MIR|MIR3	+	chr1	56645387	56715334	PRKAA2|ENST00000610361.1	+	56645387,56671440,56674380,56691393,56692357,56693764,56695934,56703970,56706091,56707474	56645474,56671447,56674522,56691487,56692502,56693852,56696159,56704475,56706218,56715334	0.937500
right_atrium_auricular_region_female_adult_51_years	chr5	16625365	16625413	16625365	+	High_confidence	24	24	114	6.255781	5.122123	chr5	16625310	16625799	LTR|ERVL|LTR105_Mam	+	chr5	16625379	16630177	STRG.9579.1	+	16625379,16626069,16629453	16625756,16627305,16630177	0.956140
right_atrium_auricular_region_female_adult_51_years	chrX	19350008	19350105	19350008	+	RAMPAGE_only	15	15	86	4.719273	5.665498	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19355317	19359025	PDHA1|ENST00000481733.1	+	19355317,19355685,19357651,19358915	19355504,19355757,19357719,19359025	0.558140
right_atrium_auricular_region_female_adult_51_years	chr8	18082561	18082593	18082561	-	High_confidence	2	2	8	0.439002	2.750000	chr8	18082289	18082821	LTR|ERV1|MER90a	+	chr8	18066901	18083184	ASAH1|ENST00000636269.1	-	18066901,18069791,18071299,18075540,18083121	18067298,18069878,18071390,18075587,18083184	0.750000
right_atrium_auricular_region_female_adult_51_years	chr19	48868595	48868617	48868595	-	High_confidence	346	353	1584	86.922427	7.616371	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.992424
right_atrium_auricular_region_female_adult_51_years	chr9	128921399	128921411	128921399	+	High_confidence	25	25	40	2.195011	4.576390	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.950000
right_atrium_auricular_region_female_adult_51_years	chr11	112176365	112176373	112176365	+	High_confidence	174	182	395	21.675732	6.132575	chr11	112176309	112176508	LINE|L2|L2c	-	chr11	112176365	112218929	BCO2|NM_001256397.1	+	112176365,112179277,112193473,112193878,112194652,112199698,112200612,112202022,112213723,112214761,112216219,112217760	112176458,112179482,112193697,112193994,112194755,112199827,112200773,112202190,112213861,112214926,112216330,112218929	0.888608
right_atrium_auricular_region_female_adult_51_years	chr11	72758541	72758572	72758550	-	RAMPAGE_only	3	3	13	0.713379	3.188722	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72793657	STARD10|ENST00000543304.5	-	72754728,72755700,72757766,72758529,72759233,72780974,72792874,72793409	72755142,72755753,72757884,72758633,72759381,72781294,72792982,72793657	0.923077
right_atrium_auricular_region_female_adult_51_years	chrX	77663382	77663409	77663382	-	RAMPAGE_only	3	3	8	0.439002	2.521641	chrX	77663038	77663337	SINE|Alu|AluJb	-	chrX	77504877	77786216	ATRX|ENST00000373344.10	-	77504877,77520787,77521402,77522262,77523251,77557450,77558668,77574249,77589833,77593695,77599410,77599731,77600433,77616612,77618805,77620394,77633206,77633565,77634593,77635914,77652113,77654097,77656559,77663381,77664644,77676225,77681519,77684938,77688817,77693823,77696576,77697582,77698573,77717130,77785981	77508629,77520916,77521498,77522388,77523401,77557645,77558846,77574358,77589940,77593849,77599580,77599820,77600564,77616730,77618981,77620532,77633384,77633712,77634703,77636056,77652353,77654200,77656653,77663558,77664778,77676298,77684593,77685006,77688927,77693937,77696704,77697635,77698629,77717243,77786216	0.875000
right_atrium_auricular_region_female_adult_51_years	chr2	3536862	3536899	3536872	-	High_confidence	11	11	59	3.237641	5.001651	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.813559
right_atrium_auricular_region_female_adult_51_years	chr19	9140390	9140428	9140393	+	High_confidence	11	11	53	2.908389	4.672899	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.886792
right_atrium_auricular_region_female_adult_51_years	chr2	37020224	37020281	37020227	-	RAMPAGE_only	29	29	97	5.322901	5.728477	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	37008167	37013995	HEATR5B|ENST00000471051.1	-	37008167,37013840	37008848,37013995	0.701031
right_atrium_auricular_region_female_adult_51_years	chr3	192567042	192567092	192567061	+	High_confidence	30	33	167	9.164170	6.495214	chr3	192566991	192567105	SINE|MIR|MIRc	-	chr3	192566954	192608042	STRG.7537.2	+	192566954,192567514,192604438	192567171,192567624,192608042	0.706587
right_atrium_auricular_region_female_adult_51_years	chr12	104030726	104030727	104030726	+	High_confidence	46	46	50	2.743763	4.798910	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.940000
right_atrium_auricular_region_female_adult_51_years	chr9	39809803	39809859	39809858	-	High_confidence	26	45	120	6.585032	5.468504	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803496	39810013	STRG.17545.2	-	39803496,39809485,39809730	39803859,39809615,39810013	0.816667
right_atrium_auricular_region_female_adult_51_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	11	13	13	0.713379	3.700440	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888512	77933384	NEXN|ENST00000401035.7	+	77888512,77916054,77917959,77918124,77925187,77926413,77926715,77929315,77933281	77888759,77916133,77918038,77918273,77925229,77926611,77926892,77929504,77933384	0.615385
right_atrium_auricular_region_female_adult_51_years	chr6	42903071	42903072	42903071	-	High_confidence	30	31	33	1.810884	4.304229	chr6	42902632	42903629	LTR|ERVK|LTR5B	-	chr6	42893918	42902807	STRG.12471.1	-	42893918,42901283,42902524	42894755,42901328,42902807	0.818182
right_atrium_auricular_region_female_adult_51_years	chr15	23403969	23404028	23404027	+	High_confidence	144	146	1529	83.904288	6.263343	chr15	23404024	23404146	SINE|MIR|MIRb	+	chr15	23403978	23407335	STRG.25222.1	+	23403978,23406959	23404108,23407335	0.984957
right_atrium_auricular_region_female_adult_51_years	chr1	25820177	25820203	25820192	+	High_confidence	7	7	36	1.975510	4.548688	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.972222
right_atrium_auricular_region_female_adult_51_years	chr6	34762050	34762052	34762050	+	RAMPAGE_only	7	12	17	0.932880	3.454822	chr6	34762020	34762316	SINE|Alu|AluJb	+	chr6	34757911	34773532	SNRPC|ENST00000474635.1	+	34757911,34762594,34767907,34770290,34772930,34773445	34757954,34762703,34767997,34770395,34773007,34773532	0.882353
right_atrium_auricular_region_female_adult_51_years	chr18	46087012	46087066	46087012	-	High_confidence	5	5	39	2.140136	4.670018	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.794872
right_atrium_auricular_region_female_adult_51_years	chr12	106833935	106833939	106833935	+	High_confidence	6	9	16	0.878004	3.373557	chr12	106833733	106834125	LTR|ERVL-MaLR|MSTB	+	chr12	106833926	106886250	STRG.23205.5	+	106833926,106842588,106843851,106851449,106860267,106870822,106885903	106834069,106842817,106843947,106851594,106860412,106870942,106886250	0.937500
right_atrium_auricular_region_female_adult_51_years	chr5	96934331	96934366	96934348	+	RAMPAGE_only	5	8	23	1.262131	3.916127	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.913043
right_atrium_auricular_region_female_adult_51_years	chr5	32403116	32403149	32403116	-	RAMPAGE_only	14	15	48	2.634013	4.712581	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
right_atrium_auricular_region_female_adult_51_years	chr4	2867814	2867851	2867850	+	High_confidence	25	26	108	5.926529	5.715256	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.972222
right_atrium_auricular_region_female_adult_51_years	chr1	1655395	1655411	1655410	-	RAMPAGE_only	16	27	40	2.195011	4.903056	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	0.950000
right_atrium_auricular_region_female_adult_51_years	chr9	106450815	106450822	106450821	+	High_confidence	52	69	110	6.036280	5.139743	chr9	106450433	106450967	LTR|ERVL-MaLR|MLT1G1	+	chr9	106450815	106604795	LINC01505|ENST00000425709.1	+	106450815,106558471,106588376,106603755	106450888,106558583,106588464,106604795	0.936364
right_atrium_auricular_region_female_adult_51_years	chr5	151158498	151158509	151158498	-	High_confidence	6	6	13	0.713379	3.546594	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.769231
right_atrium_auricular_region_female_adult_51_years	chr11	18706991	18707033	18707032	-	High_confidence	15	16	45	2.469387	4.771598	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18705417	18706129	IGSF22|ENST00000510673.1	-	18705417,18705816	18705617,18706129	0.688889
right_atrium_auricular_region_female_adult_51_years	chr5	133089637	133089693	133089677	+	RAMPAGE_only	10	18	53	2.908389	5.124147	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
right_atrium_auricular_region_female_adult_51_years	chr8	18076304	18076330	18076304	-	High_confidence	18	20	39	2.140136	4.499598	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18066766	18076305	ASAH1|ENST00000637872.1	-	18066766,18069791,18071299,18075540,18076176	18067298,18069878,18071390,18075587,18076305	0.871795
right_atrium_auricular_region_female_adult_51_years	chr12	9065161	9065174	9065173	+	High_confidence	13	13	54	2.963265	4.937839	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	STRG.21926.2	+	9065176	9068060	0.981481
right_atrium_auricular_region_female_adult_51_years	chr1	100173330	100173357	100173356	-	RAMPAGE_only	15	19	30	1.646258	4.182006	chr1	100173269	100174301	LINE|L1|L1M5	+	chr1	100148852	100178215	LRRC39|ENST00000370137.5	-	100148852,100152384,100155050,100156171,100158230,100159258,100160465,100168403,100173330,100178134	100149097,100152524,100155203,100156317,100158367,100159415,100160571,100168594,100173370,100178215	0.933333
right_atrium_auricular_region_female_adult_51_years	chr2	198113524	198113538	198113537	+	RAMPAGE_only	7	9	14	0.768254	3.085055	chr2	198113329	198113594	LINE|L2|L2b	-	chr2	198083748	198149884	PLCL1|ENST00000437704.3	+	198083748,198088857,198101284,198103826,198146779	198086232,198089061,198101360,198103936,198149884	0.928571
right_atrium_auricular_region_female_adult_51_years	chr14	68882879	68882897	68882880	-	High_confidence	13	19	29	1.591383	3.852498	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.931034
right_atrium_auricular_region_female_adult_51_years	chr4	99021631	99021632	99021631	-	High_confidence	235	235	248	13.609067	6.047710	chr4	99021524	99021908	LTR|ERV1|LTR10C	-	chr4	99021108	99021610	STRG.8674.3	-	99021108	99021610	0.733871
right_atrium_auricular_region_female_adult_51_years	chr7	40057586	40057595	40057586	+	RAMPAGE_only	4	7	15	0.823129	3.506891	chr7	40057423	40057620	LTR|ERVL-MaLR|MLT1J1	-	chr7	40059214	40093168	CDK13|ENST00000478563.2	+	40059214,40062825,40063022,40078004,40078719,40088125,40092964	40059279,40062927,40063100,40078121,40078851,40088331,40093168	0.933333
right_atrium_auricular_region_female_adult_51_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	8	8	12	0.658503	2.913977	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.916667
right_atrium_auricular_region_female_adult_51_years	chr12	80217359	80217413	80217412	+	High_confidence	17	17	41	2.249886	4.802555	chr12	80217325	80217441	SINE|MIR|MIRc	-	chr12	80217375	80379079	STRG.22991.1	+	80217375,80217597,80219813,80222090,80229256,80232891,80238850,80239332,80251692,80252075,80253465,80254523,80255039,80256336,80257824,80261968,80265000,80266450,80267252,80270101,80271647,80278167,80279027,80296826,80302633,80305575,80310610,80313475,80314304,80318545,80320421,80323722,80328664,80329050,80333004,80335962,80336412,80336796,80336911,80339074,80341947,80352294,80353324,80355735,80356415,80356806,80358247,80358670,80358859,80366573,80367560,80368204,80370569,80372018,80377122,80377847	80217483,80217664,80219912,80222245,80229378,80233097,80238978,80239439,80251799,80252201,80253574,80254570,80255185,80256460,80258002,80262093,80265210,80266616,80267327,80270154,80271810,80278275,80279166,80296961,80302783,80305695,80310727,80313632,80314331,80318713,80320700,80323840,80328744,80329119,80333078,80336140,80336555,80336820,80337004,80339264,80342162,80352436,80353510,80355948,80356520,80356914,80358349,80358775,80358900,80366637,80367739,80368309,80370689,80372064,80377202,80379079	0.951220
right_atrium_auricular_region_female_adult_51_years	chr17	68520135	68520136	68520135	+	RAMPAGE_only	20	20	21	1.152381	3.746439	chr17	68519963	68520291	LTR|ERVL-MaLR|MLT1I	-	chr17	68515399	68551319	PRKAR1A|ENST00000588188.6	+	68515399,68522755,68523724,68524015,68524911,68525753,68527839,68528869,68529919,68551083	68515576,68522926,68523816,68524077,68524958,68525912,68527900,68528991,68530001,68551319	0.952381
right_atrium_auricular_region_female_adult_51_years	chr14	31577936	31577942	31577941	+	High_confidence	4	4	10	0.548753	2.947703	chr14	31577911	31578038	LINE|L2|L2c	+	chr14	31577915	31861224	NUBPL|NM_001201573.1	+	31577915,31599288,31673354,31673483,31787779,31826628,31846470,31850118,31859117	31578025,31599379,31673394,31673574,31787873,31826714,31846591,31850201,31861224	0.900000
right_atrium_auricular_region_female_adult_51_years	chr1	231847705	231847714	231847706	-	High_confidence	2	3	7	0.384127	2.584963	chr1	231847541	231847935	LINE|L2|L2a	+	chr1	231812512	231847700	STRG.2933.1	-	231812512,231822724,231847518	231814291,231822834,231847700	0.714286
right_atrium_auricular_region_female_adult_51_years	chr5	41456595	41456622	41456608	-	RAMPAGE_only	18	18	46	2.524262	4.253858	chr5	41456571	41456939	LTR|ERVL-MaLR|MLT1A0	+	chr5	41306953	41510601	PLCXD3|ENST00000377801.7	-	41306953,41381825,41510423	41313770,41382534,41510601	0.956522
right_atrium_auricular_region_female_adult_51_years	chr13	27445106	27445108	27445107	-	RAMPAGE_only	24	47	58	3.182766	5.139736	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.982759
right_atrium_auricular_region_female_adult_51_years	chr2	26126325	26126328	26126327	+	RAMPAGE_only	4	7	10	0.548753	2.641604	chr2	26126295	26126597	SINE|Alu|AluSz6	+	chr2	26098529	26135068	RAB10|ENST00000473035.1	+	26098529,26098661,26109767,26127143,26127849,26134937	26098577,26098722,26109906,26127233,26127951,26135068	0.700000
right_atrium_auricular_region_female_adult_51_years	chr7	80594570	80594611	80594581	+	RAMPAGE_only	9	9	35	1.920634	4.440404	chr7	80594543	80594710	LINE|RTE-X|L4_C_Mam	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.885714
right_atrium_auricular_region_female_adult_51_years	chr3	129724086	129724117	129724116	-	RAMPAGE_only	3	3	13	0.713379	3.180833	chr3	129724100	129724190	LINE|CR1|L3	+	chr3	129647791	129688732	TMCC1|NR_033361.1	-	129647791,129654967,129670329,129688176	129651795,129655103,129671264,129688732	1.000000
right_atrium_auricular_region_female_adult_51_years	chr1	20028513	20028646	20028515	+	High_confidence	107	132	190	10.426301	6.707247	chr1	20028464	20028814	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.752632
right_atrium_auricular_region_female_adult_51_years	chr6	77369158	77369167	77369158	-	High_confidence	8	8	19	1.042630	4.037401	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77350621	77369155	STRG.12778.1	-	77350621,77368885	77350734,77369155	0.789474
right_atrium_auricular_region_female_adult_51_years	chr9	91883553	91883554	91883553	-	High_confidence	50	50	72	3.951019	5.250941	chr9	91883438	91883648	DNA|hAT-Charlie|MER3	-	chr9	91722614	91883856	STRG.17967.2	-	91722614,91726540,91730909,91733121,91737390,91756070,91757271,91775740,91883257	91725107,91726743,91731155,91733436,91737518,91756101,91757559,91775818,91883856	0.902778
right_atrium_auricular_region_female_adult_51_years	chr16	63618045	63618046	63618045	-	High_confidence	83	112	114	6.255781	5.851680	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.675439
right_atrium_auricular_region_female_adult_51_years	chr5	57403555	57403599	57403598	+	High_confidence	36	46	148	8.121540	5.622492	chr5	57403431	57403859	LTR|ERVL|LTR33	-	chr5	57403573	57408048	STRG.9844.1	+	57403573,57407884	57403782,57408048	0.952703
right_atrium_auricular_region_female_adult_51_years	chr6	20334469	20334470	20334469	-	High_confidence	85	97	122	6.694783	5.044885	chr6	20334196	20334750	LTR|ERVL-MaLR|MLT1K	-	chr6	20331257	20334485	STRG.12017.1	-	20331257,20332380,20334133	20331525,20332489,20334485	0.959016
right_atrium_auricular_region_female_adult_51_years	chr13	23760523	23760530	23760529	-	High_confidence	3	3	7	0.384127	2.584963	chr13	23760386	23760741	LTR|ERVL-MaLR|MLT1B	+	chr13	23730188	23760573	MIPEP|ENST00000433710.2	-	23730188,23756544,23760095,23760532	23730445,23756618,23760217,23760573	0.857143
right_atrium_auricular_region_female_adult_51_years	chr1	202582563	202582664	202582663	+	RAMPAGE_only	29	29	70	3.841269	4.776928	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.985714
right_atrium_auricular_region_female_adult_51_years	chr12	883778	883829	883828	+	RAMPAGE_only	8	8	51	2.798639	5.083856	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	862173	911300	STRG.21752.3	+	862173,871264,878211,879572,880720,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846,908474	862270,871348,878361,880031,880999,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,908034,911300	0.980392
right_atrium_auricular_region_female_adult_51_years	chr1	23178522	23178541	23178532	-	High_confidence	17	19	51	2.798639	4.745284	chr1	23178269	23178491	SINE|MIR|MIRb	-	chr1	23084029	23177808	LUZP1|ENST00000302291.8	-	23084029,23091189,23109021,23168765,23177490	23089053,23094380,23109127,23169024,23177808	0.705882
right_atrium_auricular_region_female_adult_51_years	chr3	29924789	29924912	29924789	+	High_confidence	22	27	141	7.737413	5.657927	chr3	29924556	29924859	SINE|Alu|AluSp	+	chr3	29924750	29991197	RBMS3|ENST00000473799.1	+	29924750,29936085,29944206,29988142,29991081	29925243,29936196,29944254,29988223,29991197	0.936170
right_atrium_auricular_region_female_adult_51_years	chr8	18082749	18082750	18082749	-	High_confidence	4	4	7	0.384127	2.584963	chr8	18082289	18082821	LTR|ERV1|MER90a	+	chr8	18062354	18082603	ASAH1|ENST00000636823.1	-	18062354,18063184,18064456,18067219,18069791,18071299,18075540,18082526	18062423,18063230,18064531,18067298,18069878,18071390,18075587,18082603	0.571429
right_atrium_auricular_region_female_adult_51_years	chr6	2990740	2990755	2990754	-	RAMPAGE_only	7	7	30	1.646258	2.899063	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.933333
right_atrium_auricular_region_female_adult_51_years	chr4	64500466	64500467	64500466	-	RAMPAGE_only	416	423	442	24.254869	6.375288	chr4	64500297	64500658	LTR|ERVL-MaLR|THE1D	-	chr4	64275256	64409468	TECRL|ENST00000507440.5	-	64275256,64281040,64281473,64289709,64299973,64305165,64309825,64314647,64322688,64328511,64375171,64409117	64277051,64281086,64281559,64289767,64300017,64305238,64309931,64314763,64322792,64328556,64375223,64409468	0.624434
right_atrium_auricular_region_female_adult_51_years	chr13	106561950	106561951	106561950	-	High_confidence	22	22	23	1.262131	3.936260	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.956522
right_atrium_auricular_region_female_adult_51_years	chrX	44314305	44314316	44314307	-	RAMPAGE_only	4	7	14	0.768254	3.546594	chrX	44314142	44314275	LINE|L1|L1ME3Cz	-	chrX	44148664	44343672	EFHC2|ENST00000420999.1	-	44148664,44163921,44176291,44178366,44229648,44232480,44235304,44242120,44248271,44248802,44250193,44261074,44272685,44312567,44343546	44148896,44164027,44176384,44178564,44229779,44232677,44235447,44242289,44248410,44248916,44250445,44261298,44272836,44312756,44343672	0.714286
right_atrium_auricular_region_female_adult_51_years	chr5	66440352	66440398	66440388	-	High_confidence	346	403	1812	99.433989	6.762697	chr5	66440146	66440632	LTR|ERVL-MaLR|MLT1F1	+	chr5	66340153	66440530	STRG.9932.1	-	66340153,66388626,66400794	66351228,66400766,66440530	0.991170
right_atrium_auricular_region_female_adult_51_years	chr14	44912628	44912682	44912628	-	High_confidence	5	5	20	1.097505	3.621928	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.700000
right_atrium_auricular_region_female_adult_51_years	chr1	202584903	202585264	202585210	+	RAMPAGE_only	24	24	411	22.553736	5.041901	chr1	202585028	202585296	SINE|Alu|AluJb	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.997567
right_atrium_auricular_region_female_adult_51_years	chr18	31227730	31227731	31227730	-	High_confidence	8	8	9	0.493877	2.500000	chr18	31227706	31227868	LTR|ERVL-MaLR|MLT1J	-	chr18	31124495	31227712	STRG.29493.5	-	31124495,31131593,31132567,31133890,31134571,31139747,31140041,31141998,31143656,31145610,31148497,31154773,31156042,31157370,31159444,31227437	31130711,31131842,31132689,31134130,31134784,31139890,31140301,31142184,31143791,31145777,31148642,31154929,31156162,31157573,31159529,31227712	0.666667
right_atrium_auricular_region_female_adult_51_years	chr2	10844476	10844477	10844476	+	High_confidence	9	9	10	0.548753	2.725481	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844239	10885118	STRG.3183.4	+	10844239,10884833	10844505,10885118	0.700000
right_atrium_auricular_region_female_adult_51_years	chr1	200411654	200411691	200411683	+	High_confidence	15	16	40	2.195011	4.343598	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411693	200478360	AC104461.1|ENST00000647823.1	+	200411693,200444617,200472040,200473908,200477967	200411962,200444945,200472119,200474186,200478360	0.850000
right_atrium_auricular_region_female_adult_51_years	chr2	230713969	230713970	230713969	+	High_confidence	16	16	17	0.932880	3.625000	chr2	230713791	230714179	LINE|L2|L2c	-	chr2	230713547	230821075	CAB39|NM_001130850.1	+	230713547,230759958,230790871,230793212,230798728,230810262,230814048,230817753,230818515	230713802,230760115,230791036,230793331,230798897,230810322,230814114,230817897,230821075	0.941176
right_atrium_auricular_region_female_adult_51_years	chr3	139344537	139344548	139344537	+	High_confidence	31	34	83	4.554647	5.047468	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.975904
right_atrium_auricular_region_female_adult_51_years	chr2	227164620	227164621	227164620	+	High_confidence	27	27	27	1.481632	4.384517	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	1.000000
right_atrium_auricular_region_female_adult_51_years	chrX	5726228	5726240	5726228	-	High_confidence	2	2	11	0.603628	2.721928	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.636364
right_atrium_auricular_region_female_adult_51_years	chr16	760794	760820	760819	+	High_confidence	14	17	23	1.262131	3.762267	chr16	760734	760840	SINE|MIR|MIRc	-	chr16	760766	768865	MSLN|ENST00000566549.5	+	760766,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766667,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	1.000000
right_atrium_auricular_region_female_adult_51_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	13	13	13	0.713379	3.180833	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
right_atrium_auricular_region_female_adult_51_years	chr1	147517874	147517875	147517874	-	High_confidence	25	25	25	1.371882	4.163856	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147258884	147517875	LINC00624|ENST00000619867.4	-	147258884,147384667,147408589,147514337,147515520,147517442	147260976,147384863,147408689,147514448,147515676,147517875	0.960000
right_atrium_auricular_region_female_adult_51_years	chr9	111284874	111284875	111284874	-	High_confidence	17	17	18	0.987755	3.381580	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.888889
right_atrium_auricular_region_female_adult_51_years	chr3	114624940	114625007	114625006	-	High_confidence	74	86	630	34.571420	5.481570	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.898413
right_atrium_auricular_region_female_adult_51_years	chr4	4269609	4269614	4269613	-	High_confidence	11	11	19	1.042630	2.927451	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.947368
right_atrium_auricular_region_female_adult_51_years	chr1	33021455	33021456	33021455	-	RAMPAGE_only	6	7	8	0.439002	3.000000	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.875000
right_atrium_auricular_region_female_adult_51_years	chrX	149480583	149480584	149480583	-	RAMPAGE_only	13	13	16	0.878004	2.872906	chrX	149480505	149480778	SINE|Alu|AluSz	-	chrX	149476989	149505347	IDS|ENST00000340855.10	-	149476989,149486924,149490313,149496345,149498106,149500948,149503311,149504156,149505034	149483218,149487098,149490440,149496516,149498307,149501037,149503489,149504293,149505347	0.937500
right_atrium_auricular_region_female_adult_51_years	chr12	53464788	53464816	53464815	+	RAMPAGE_only	5	5	16	0.878004	3.750000	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479614	STRG.22469.15	+	53462513,53465931,53467220,53467804,53471637,53479405	53462567,53465973,53467293,53468832,53471807,53479614	0.937500
right_atrium_auricular_region_female_adult_51_years	chr14	32075871	32075884	32075879	+	High_confidence	3	3	15	0.823129	3.640224	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076113	32090780	ARHGAP5|ENST00000555814.1	+	32076113,32076457,32090501	32076217,32076657,32090780	0.666667
right_atrium_auricular_region_female_adult_51_years	chr13	113187343	113187344	113187343	-	High_confidence	5	5	7	0.384127	2.584963	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.857143
right_atrium_auricular_region_female_adult_51_years	chr22	32059155	32059191	32059169	+	High_confidence	1077	1092	2286	125.444867	6.107687	chr22	32059153	32059234	SINE|Alu|AluSz6	+	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	0.964129
right_atrium_auricular_region_female_adult_51_years	chr6	141404090	141404108	141404107	+	High_confidence	5	5	17	0.932880	3.734522	chr6	141403283	141405210	LTR|ERV1|LOR1-int	+	chr6	141403158	141451006	STRG.13353.1	+	141403158,141403569,141446008	141403489,141404274,141451006	0.529412
right_atrium_auricular_region_female_adult_51_years	chr6	43013392	43013393	43013392	-	High_confidence	11	11	12	0.658503	3.459432	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.916667
right_atrium_auricular_region_female_adult_51_years	chr19	33395177	33395178	33395177	-	High_confidence	4	5	7	0.384127	2.584963	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	0.857143
right_atrium_auricular_region_female_adult_51_years	chr11	64242588	64242620	64242588	+	High_confidence	39	49	179	9.822673	5.805717	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.972067
right_atrium_auricular_region_female_adult_51_years	chr1	174161426	174161465	174161426	+	RAMPAGE_only	3	3	13	0.713379	3.084963	chr1	174161256	174161539	SINE|Alu|AluSp	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.923077
right_atrium_auricular_region_female_adult_51_years	chr10	30974856	30974879	30974868	-	RAMPAGE_only	14	14	42	2.304761	4.812210	chr10	30974767	30974948	SINE|MIR|MIR3	-	chr10	30844633	30984426	ZNF438|ENST00000361310.7	-	30844633,30848530,30876997,30908932,30910359,30941574,30984368	30845573,30850367,30877065,30909015,30910440,30941651,30984426	0.690476
right_atrium_auricular_region_female_adult_51_years	chr6	56839178	56839181	56839178	-	RAMPAGE_only	33	34	62	3.402267	4.868967	chr6	56839131	56839380	LTR|ERVL-MaLR|MLT1J	+	chr6	56476180	56843146	STRG.12678.4	-	56476180,56477344,56482049,56482682,56485311,56487103,56489489,56492226,56492933,56494009,56497378,56497855,56501079,56501519,56503996,56506442,56506666,56508528,56509641,56511196,56515449,56517197,56517500,56526360,56527492,56528840,56529447,56529973,56532343,56535121,56536778,56552183,56555344,56557318,56560293,56561307,56562137,56568468,56569855,56572099,56572746,56573678,56578813,56592181,56593662,56597739,56598475,56600068,56601442,56602881,56603204,56603563,56603836,56610426,56611507,56614355,56624529,56625156,56627203,56627998,56629249,56630244,56631210,56631882,56632853,56634131,56634461,56634800,56635588,56636556,56639258,56639449,56639695,56639928,56640142,56641946,56642409,56645865,56646086,56648569,56650925,56651131,56670640,56699652,56701887,56703710,56704279,56735227,56843054	56476337,56477488,56482178,56482877,56485471,56487273,56489609,56492433,56493089,56494180,56497507,56498053,56501235,56501693,56504098,56506544,56506789,56508755,56509873,56511400,56515668,56517305,56517620,56526567,56527734,56528925,56529774,56530133,56532510,56535292,56536940,56553655,56555840,56557518,56560423,56561549,56562200,56568595,56570012,56572266,56573064,56573887,56578937,56592358,56594193,56598006,56598709,56600221,56601676,56603031,56603420,56603713,56609344,56610562,56611596,56614484,56624628,56625264,56627287,56628161,56629443,56630383,56631389,56632040,56633037,56634258,56634616,56634953,56635714,56636652,56639363,56639611,56639773,56640057,56640605,56642101,56642503,56645993,56646182,56648689,56651032,56651244,56670807,56699745,56701965,56703746,56704369,56735289,56843146	0.661290
right_atrium_auricular_region_female_adult_51_years	chr11	2375370	2375404	2375372	-	High_confidence	77	119	274	15.035824	5.399440	chr11	2375301	2375633	LINE|L2|L2b	+	chr11	2370480	2375398	STRG.20104.1	-	2370480,2375298	2373245,2375398	0.992701
right_atrium_auricular_region_female_adult_51_years	chr1	205917563	205917591	205917590	-	RAMPAGE_only	5	5	17	0.932880	3.327820	chr1	205917586	205917804	SINE|MIR|MIRc	+	chr1	205913047	205920291	STRG.2622.1	-	205913047,205917282,205918839,205920175	205915404,205917354,205918985,205920291	0.941176
right_atrium_auricular_region_female_adult_51_years	chr5	150651107	150651422	150651371	+	RAMPAGE_only	26	26	469	25.736502	6.052962	chr5	150651250	150651383	SINE|MIR|MIR3	+	chr5	150640677	150652337	SYNPO|ENST00000519664.1	+	150640677,150647943	150640854,150652337	0.991471
right_atrium_auricular_region_female_adult_51_years	chr19	11196122	11196157	11196156	-	High_confidence	6	6	39	2.140136	4.111367	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.871795
right_atrium_auricular_region_female_adult_51_years	chr10	45756343	45756349	45756343	+	RAMPAGE_only	4	4	11	0.603628	2.521928	chr10	45756249	45756434	LINE|L1|L1ME3G	+	chr10	45752428	45792601	STRG.19078.6	+	45752428,45753179,45754485,45754935,45757009,45759314,45763387,45765678,45769448,45773255,45777272,45778952,45784564,45784820,45785508,45787034,45788870,45790355,45792260	45752706,45753237,45754545,45755113,45757139,45759401,45763489,45765810,45769618,45773358,45777425,45779135,45784693,45784901,45785631,45787247,45789491,45790533,45792601	0.909091
right_atrium_auricular_region_female_adult_51_years	chr3	179681656	179681666	179681665	+	RAMPAGE_only	24	28	40	2.195011	4.560667	chr3	179681222	179681750	LTR|ERV1|LTR6A	-	chr3	179653692	179784406	USP13|ENST00000496897.5	+	179653692,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653750,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179784406	0.975000
right_atrium_auricular_region_female_adult_51_years	chr9	38949733	38949734	38949733	+	High_confidence	42	46	60	3.292516	4.955032	chr9	38949604	38949969	LTR|ERV1|LTR38B	+	chr9	38949758	38998501	STRG.17520.1	+	38949758,38950328,38964939,38997942	38949849,38950512,38965093,38998501	0.966667
right_atrium_auricular_region_female_adult_51_years	chr1	6003018	6003035	6003034	+	RAMPAGE_only	14	27	50	2.743763	4.971653	chr1	6003009	6003075	SINE|MIR|MIRc	-	chr1	5992700	6098574	KCNAB2|ENST00000378092.5	+	5992700,6040516,6072754,6073732,6082194,6085203,6087466,6089007,6090388,6094399,6095322,6095529,6096635,6097268,6098484	5992788,6040645,6072798,6073770,6082274,6085248,6087511,6089051,6090475,6094485,6095443,6095624,6096756,6097357,6098574	0.680000
right_atrium_auricular_region_female_adult_51_years	chr7	53811930	53811935	53811930	-	High_confidence	13	13	29	1.591383	4.228165	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.862069
right_atrium_auricular_region_female_adult_51_years	chr16	63617832	63617838	63617832	-	High_confidence	6	7	15	0.823129	3.589898	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63304880	63618033	STRG.27363.1	-	63304880,63334599,63531224,63617692	63305420,63334667,63531304,63618033	0.533333
right_atrium_auricular_region_female_adult_51_years	chr2	229232053	229232069	229232053	-	High_confidence	5	7	14	0.768254	3.182006	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.785714
right_atrium_auricular_region_female_adult_51_years	chr6	6739315	6739316	6739315	-	High_confidence	13	13	15	0.823129	3.324863	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6704670	6739030	AL031123.1|ENST00000648205.1	-	6704670,6710871,6711696,6738908	6705078,6711059,6711858,6739030	0.800000
right_atrium_auricular_region_female_adult_51_years	chr1	23177523	23177531	23177523	-	High_confidence	4	4	13	0.713379	3.084963	chr1	23177412	23177535	SINE|MIR|MIRb	+	chr1	23084029	23177808	LUZP1|ENST00000302291.8	-	23084029,23091189,23109021,23168765,23177490	23089053,23094380,23109127,23169024,23177808	0.846154
right_atrium_auricular_region_female_adult_51_years	chr5	156707969	156707970	156707969	+	RAMPAGE_only	9	9	10	0.548753	2.947703	chr5	156707915	156708257	DNA|hAT-Charlie|MER113	+	chr5	156326756	156759604	SGCD|ENST00000337851.8	+	156326756,156329533,156344488,156508600,156589230,156594931,156647463,156757580,156759216	156327232,156329579,156344677,156508702,156589318,156595051,156647536,156757704,156759604	0.700000
right_atrium_auricular_region_female_adult_51_years	chr3	14047155	14047206	14047205	-	High_confidence	39	43	94	5.158275	4.956602	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14041508	14047194	STRG.5658.1	-	14041508,14046812	14041628,14047194	0.893617
right_atrium_auricular_region_female_adult_51_years	chr10	122029039	122029064	122029057	+	RAMPAGE_only	10	12	22	1.207256	3.880180	chr10	122029026	122029558	LINE|L1|L1MD	-	chr10	122021992	122083007	TACC2|ENST00000491540.1	+	122021992,122033093,122050437,122082655	122022014,122033153,122050550,122083007	0.772727
right_atrium_auricular_region_female_adult_51_years	chr18	26459345	26459356	26459355	-	RAMPAGE_only	5	5	13	0.713379	3.180833	chr18	26459280	26459387	SINE|Alu|FLAM_A	-	chr18	26454909	26548536	KCTD1|NM_001142730.2	-	26454909,26459619,26476514,26501071,26546727	26455901,26459925,26476659,26501250,26548536	1.000000
right_atrium_auricular_region_female_adult_51_years	chr10	65570494	65570536	65570535	+	High_confidence	3	3	14	0.768254	3.026987	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570535	65585775	LINC01515|ENST00000608678.5	+	65570535,65571424,65572934,65581611,65585484	65570759,65571579,65573056,65581673,65585775	0.571429
right_atrium_auricular_region_female_adult_51_years	chr1	174874422	174874439	174874422	+	High_confidence	2	2	7	0.384127	2.584963	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874457	174958182	RABGAP1L|ENST00000478442.5	+	174874457,174877391,174957456,174957890	174874506,174877605,174957549,174958182	0.571429
right_atrium_auricular_region_female_adult_51_years	chr19	571753	571792	571791	-	High_confidence	2	2	7	0.384127	2.807355	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	1.000000
right_atrium_auricular_region_female_adult_51_years	chr1	39026177	39026191	39026177	+	High_confidence	2	2	12	0.658503	3.027169	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.916667
right_atrium_auricular_region_female_adult_51_years	chr19	20423688	20423704	20423703	-	RAMPAGE_only	7	8	23	1.262131	3.844882	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.956522
right_atrium_auricular_region_female_adult_51_years	chr7	107580245	107580267	107580264	+	High_confidence	878	878	4313	236.677039	6.553154	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.965221
right_atrium_auricular_region_female_adult_51_years	chr8	93017660	93017734	93017715	-	High_confidence	22	22	181	9.932424	6.303941	chr8	93017253	93017736	LTR|ERVL|LTR79	-	chr8	92886234	93017673	STRG.16429.3	-	92886234,92891988,92916928,92921502,92954405,93017608	92886735,92892074,92917010,92921660,92954564,93017673	0.756906
right_atrium_auricular_region_female_adult_51_years	chr12	45292676	45292722	45292685	+	High_confidence	70	109	345	18.931968	6.506695	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.982609
right_atrium_auricular_region_female_adult_51_years	chr2	178679631	178679677	178679676	-	RAMPAGE_only	2	2	9	0.493877	3.000000	chr2	178679617	178679655	LINE|CR1|L3	-	chr2	178636751	178702520	TTN|ENST00000414766.5	-	178636751,178639698,178640047,178640540,178641240,178642236,178673632,178674313,178678124,178678413,178678746,178681660,178682696,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453	178636799,178639788,178640110,178640630,178641315,178642317,178673710,178674409,178678208,178678497,178678830,178681738,178682903,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702520	0.777778
right_atrium_auricular_region_female_adult_51_years	chr1	6820193	6820218	6820193	+	RAMPAGE_only	5	5	18	0.987755	2.558051	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.777778
right_atrium_auricular_region_female_adult_51_years	chr10	50097001	50097007	50097001	+	RAMPAGE_only	12	12	20	1.097505	3.511085	chr10	50096912	50097097	LINE|L1|L1ME3G	+	chr10	50078125	50133506	WASHC2A|ENST00000399339.6	+	50078125,50078674,50080757,50084071,50085496,50087274,50090775,50091430,50092161,50093267,50093859,50095147,50095598,50097674,50099977,50104041,50106333,50110100,50113894,50117905,50119586,50125112,50125368,50126056,50127159,50127582,50129418,50130900,50132805	50078152,50078737,50080931,50084165,50085558,50087322,50090886,50091518,50092233,50093386,50093917,50095207,50095778,50097802,50100064,50104143,50106465,50110270,50113997,50118058,50119769,50125241,50125449,50126179,50127222,50127795,50130039,50131078,50133506	0.900000
right_atrium_auricular_region_female_adult_51_years	chr14	55671852	55671864	55671852	+	High_confidence	3	3	9	0.493877	2.750000	chr14	55671902	55672073	DNA|hAT-Charlie|MER5A	+	chr14	55671314	55684579	KTN1|ENST00000556631.1	+	55671314,55678351,55679564,55684098	55675918,55678444,55679685,55684579	0.888889
right_atrium_auricular_region_female_adult_51_years	chr10	113623544	113623628	113623544	-	RAMPAGE_only	6	6	40	2.195011	4.958354	chr10	113623541	113623581	LINE|RTE-X|L4_B_Mam	+	chr10	113588715	113664046	NRAP|ENST00000369360.7	-	113588715,113589665,113590577,113592193,113595622,113597085,113597968,113604608,113605761,113606177,113608413,113610458,113612233,113614182,113614838,113615711,113617454,113620603,113621868,113623528,113624825,113626046,113628916,113629587,113631508,113631852,113633083,113634111,113640226,113641364,113645824,113646922,113650036,113650437,113651802,113652934,113654020,113657469,113662678,113663351,113663810	113589079,113589797,113590889,113592301,113595727,113597184,113598073,113604920,113605869,113606282,113608512,113610563,113612431,113614296,113614946,113615816,113617553,113620708,113622180,113623636,113624930,113626145,113629021,113629785,113631630,113631964,113633188,113634210,113640331,113641472,113645941,113647027,113650141,113650545,113651907,113653039,113654125,113657574,113662766,113663446,113664046	0.975000
right_atrium_auricular_region_female_adult_51_years	chr3	123620577	123620578	123620577	-	High_confidence	6	8	9	0.493877	2.750000	chr3	123620562	123620624	LINE|RTE-BovB|MamRTE1	-	chr3	123614063	123620626	MYLK|ENST00000583087.5	-	123614063,123618638,123620206,123620496	123614349,123618770,123620336,123620626	0.888889
right_atrium_auricular_region_female_adult_51_years	chr19	50379841	50379871	50379870	+	RAMPAGE_only	4	4	10	0.548753	2.641604	chr19	50379903	50379991	SINE|MIR|MIRc	+	chr19	50377244	50382944	NR1H2|ENST00000593926.5	+	50377244,50377586,50377732,50378148,50378521,50379001,50379779,50381965,50382455	50377328,50377648,50377870,50378439,50378796,50379181,50379879,50382174,50382944	0.900000
right_atrium_auricular_region_female_adult_51_years	chr15	97521630	97521666	97521630	-	High_confidence	3	3	10	0.548753	2.921928	chr15	97521399	97521640	SINE|tRNA|LFSINE_Vert	+	chr15	97370370	97521811	LINC02254|ENST00000558621.2	-	97370370,97397656,97427650,97515286,97521580	97371341,97397740,97427952,97515424,97521811	1.000000
right_atrium_auricular_region_female_adult_51_years	chr9	92536601	92536602	92536601	-	High_confidence	30	35	40	2.195011	4.823864	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.900000
right_atrium_auricular_region_female_adult_51_years	chr3	47714704	47714737	47714736	-	RAMPAGE_only	2	2	6	0.329252	2.584963	chr3	47714594	47714819	SINE|Alu|AluSx4	+	chr3	47678195	47701654	SMARCC1|ENST00000462198.5	-	47678195,47680436,47686048,47689386,47693240,47701277	47678311,47680508,47686170,47689424,47693300,47701654	1.000000
right_atrium_auricular_region_female_adult_51_years	chr2	49832180	49832205	49832180	-	High_confidence	6	8	15	0.823129	3.093069	chr2	49831961	49832181	LTR|ERVL-MaLR|THE1D	-	chr2	49815478	49832169	STRG.3625.1	-	49815478,49820305,49832044	49815686,49820445,49832169	0.666667
right_atrium_auricular_region_female_adult_51_years	chr12	15001810	15001826	15001810	+	High_confidence	9	9	30	1.646258	4.389898	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.900000
right_atrium_auricular_region_female_adult_51_years	chr1	147173219	147173250	147173225	+	High_confidence	10	10	21	1.152381	4.121928	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.666667
right_atrium_auricular_region_female_adult_51_years	chr5	92329104	92329145	92329104	+	High_confidence	2	2	13	0.713379	3.392747	chr5	92329090	92329219	LINE|L2|L2a	-	chr5	92329229	92332584	AC114316.1|ENST00000511323.1	+	92329229,92332448	92329371,92332584	0.538462
right_atrium_auricular_region_female_adult_51_years	chr2	177499706	177499716	177499706	+	RAMPAGE_only	2	2	10	0.548753	2.947703	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.600000
right_atrium_auricular_region_female_adult_51_years	chr4	173410129	173410155	173410129	-	RAMPAGE_only	2	2	11	0.603628	2.921928	chr4	173409898	173410656	LTR|Gypsy|MamGypLTR3a	+	chr4	173388161	173406380	SCRG1|ENST00000512188.1	-	173388161,173389594,173391172,173398261,173399067,173403123,173404073,173404304,173406259	173388395,173389892,173391428,173398434,173399243,173403259,173404193,173404432,173406380	0.909091
right_atrium_auricular_region_female_adult_51_years	chr13	110507363	110507420	110507419	+	High_confidence	2	2	7	0.384127	2.521641	chr13	110507382	110507519	LINE|RTE-X|L4_A_Mam	-	chr13	110507443	110512133	COL4A2|ENST00000463084.1	+	110507443,110507934,110511933	110507635,110508221,110512133	0.857143
right_atrium_auricular_region_female_adult_51_years	chr1	166850222	166850275	166850222	+	RAMPAGE_only	2	2	13	0.713379	3.251629	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.923077
right_atrium_auricular_region_female_adult_51_years	chr10	102449836	102449840	102449836	+	High_confidence	3	3	8	0.439002	2.750000	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	1.000000
right_atrium_auricular_region_female_adult_51_years	chr5	151687233	151687245	151687244	-	High_confidence	8	8	19	1.042630	3.405822	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
right_atrium_auricular_region_female_adult_51_years	chr5	108380033	108380034	108380033	-	RAMPAGE_only	4	4	6	0.329252	2.584963	chr5	108379933	108380070	SINE|MIR|MIRb	+	chr5	107859052	108381109	FBXL17|ENST00000619412.4	-	107859052,107881036,108020924,108186116,108224120,108348398,108364737,108367830,108380698,108381055	107861860,107881179,108021001,108186247,108224228,108348530,108364995,108367953,108380923,108381109	1.000000
right_atrium_auricular_region_female_adult_51_years	chr1	147173173	147173194	147173193	+	High_confidence	3	3	9	0.493877	2.725481	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.888889
right_atrium_auricular_region_female_adult_51_years	chr20	50172544	50172590	50172544	+	High_confidence	4	5	21	1.152381	3.975418	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172549	50173370	LINC01273|ENST00000427333.5	+	50172549,50172922,50173201	50172788,50173017,50173370	0.666667
right_atrium_auricular_region_female_adult_51_years	chr10	95437804	95437816	95437815	-	RAMPAGE_only	40	40	68	3.731518	4.876677	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.735294
right_atrium_auricular_region_female_adult_51_years	chr16	56256056	56256063	56256059	+	High_confidence	3	4	9	0.493877	2.750000	chr16	56254180	56256630	LINE|L1|L1MEj	-	chr16	56256074	56356741	STRG.27216.8	+	56256074,56275930,56328630,56334728,56336730,56351383,56354865	56256204,56276072,56328791,56334857,56336860,56351537,56356741	0.888889
right_atrium_auricular_region_female_adult_51_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	8	8	12	0.658503	2.845351	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.833333
right_atrium_auricular_region_female_adult_51_years	chr9	121313983	121314023	121314002	+	RAMPAGE_only	55	57	330	18.108839	5.353983	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
right_atrium_auricular_region_female_adult_51_years	chr3	115110180	115110207	115110206	-	RAMPAGE_only	95	102	198	10.865303	5.789443	chr3	115109927	115110224	SINE|Alu|AluSx	+	chr3	114348310	115147271	STRG.6657.1	-	114348310,114380216,114389004,114500351,114693527,114801100,114900303,114974365,115071218,115110086,115147218	114351878,114380404,114389105,114500391,114693575,114801174,114900342,114974416,115071414,115110200,115147271	0.944444
right_atrium_auricular_region_female_adult_51_years	chr16	760877	760925	760924	+	High_confidence	55	60	115	6.310656	5.606057	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	0.973913
right_atrium_auricular_region_female_adult_51_years	chr3	135965673	135965749	135965723	+	High_confidence	29	35	160	8.780043	6.012703	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.975000
right_atrium_auricular_region_female_adult_51_years	chr17	59651207	59651210	59651207	+	RAMPAGE_only	3	4	7	0.384127	2.521641	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59648239	59695112	STRG.28874.5	+	59648239,59651202,59655853,59660390,59661442,59663841,59664786,59666102,59666479,59666796,59668776,59673646,59674700,59676953,59679396,59680911,59681294,59681646,59682270,59682628,59682906,59683094,59683386,59683624,59683874,59685055,59685586,59687000,59690635,59693727	59648401,59651316,59656027,59660588,59661643,59663994,59664909,59666240,59666644,59666977,59668940,59673772,59674843,59677188,59679519,59681057,59681478,59681839,59682428,59682793,59683014,59683262,59683536,59683756,59683985,59685226,59685808,59687021,59690711,59695112	1.000000
right_atrium_auricular_region_female_adult_51_years	chr20	3795750	3795789	3795759	+	High_confidence	11	12	66	3.621768	5.627579	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
right_atrium_auricular_region_female_adult_51_years	chr17	50165528	50165560	50165528	+	High_confidence	2	2	10	0.548753	3.321928	chr17	50165337	50165958	LINE|L2|L2b	-	chr17	50165408	50168570	STRG.28759.10	+	50165408,50167367,50167581,50167946,50168373	50165545,50167487,50167736,50168019,50168570	0.900000
right_atrium_auricular_region_female_adult_51_years	chr15	57602713	57602714	57602713	+	RAMPAGE_only	17	17	20	1.097505	4.247928	chr15	57602679	57602910	SINE|MIR|MIR	+	chr15	57599410	57625809	MYZAP|ENST00000569089.1	+	57599410,57599618,57604268,57618032,57621607,57625778	57599525,57599703,57604355,57618188,57621700,57625809	0.700000
right_atrium_auricular_region_female_adult_51_years	chr4	47831189	47831202	47831189	+	High_confidence	6	6	12	0.658503	3.418296	chr4	47831064	47831545	LINE|RTE-BovB|MamRTE1	+	chr4	47831344	47896848	LOC101927179|NR_125881.1	+	47831344,47875205,47896541	47831508,47875331,47896848	0.750000
right_atrium_auricular_region_female_adult_51_years	chr11	77175291	77175303	77175302	+	High_confidence	7	7	13	0.713379	3.418296	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175430	77181568	STRG.21094.1	+	77175430,77177548,77179044,77179734,77180373,77181379	77175464,77177643,77179129,77179953,77180481,77181568	0.846154
right_atrium_auricular_region_female_adult_51_years	chr19	11196212	11196224	11196212	-	High_confidence	3	3	14	0.768254	3.235926	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.785714
right_atrium_auricular_region_female_adult_51_years	chr2	163121648	163121700	163121682	+	High_confidence	30	30	85	4.664398	5.491775	chr2	163121522	163122034	LINE|L1|L1ME2	-	chr2	163121660	163124719	STRG.4671.1	+	163121660,163124118	163121927,163124719	0.941176
right_atrium_auricular_region_female_adult_51_years	chr11	65181222	65181255	65181222	+	High_confidence	7	7	20	1.097505	4.037401	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.950000
right_atrium_auricular_region_female_adult_51_years	chr9	68975842	68975846	68975842	-	High_confidence	2084	2185	4056	222.574095	5.950943	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.859467
right_atrium_auricular_region_female_adult_51_years	chr4	119145824	119145830	119145824	+	RAMPAGE_only	6	6	19	1.042630	3.721612	chr4	119145674	119147458	LINE|L1|L1MD1	-	chr4	119135783	119187789	MYOZ2|ENST00000307128.5	+	119135783,119136511,119150871,119158021,119164210,119185965	119135982,119136601,119151041,119158151,119164394,119187789	1.000000
right_atrium_auricular_region_female_adult_51_years	chr15	76576966	76576996	76576984	-	High_confidence	4	4	15	0.823129	3.906891	chr15	76576480	76577164	LINE|L1|L1MA3	+	chr15	76471261	76576985	SCAPER|ENST00000569784.1	-	76471261,76504858,76567269,76574157,76576858	76471335,76504974,76567405,76574284,76576985	0.666667
right_atrium_auricular_region_female_adult_51_years	chr20	36624284	36624306	36624305	-	RAMPAGE_only	10	10	16	0.878004	3.577820	chr20	36624215	36624341	LINE|L2|L2a	+	chr20	36612518	36645881	SLA2|ENST00000360672.2	-	36612518,36614304,36615224,36632594,36633542,36634489,36641244,36645836	36613986,36614387,36615374,36632698,36633629,36634589,36641378,36645881	1.000000
right_atrium_auricular_region_female_adult_51_years	chr21	44962753	44962791	44962778	+	RAMPAGE_only	3	3	10	0.548753	2.947703	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44958245	44976973	FAM207A|ENST00000479127.5	+	44958245,44960099,44967033,44973196,44976679	44958424,44960168,44967181,44973265,44976973	0.800000
right_atrium_auricular_region_female_adult_51_years	chr21	28090097	28090126	28090097	+	High_confidence	3	3	8	0.439002	2.521641	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28089888	28102790	LINC01697|ENST00000423808.2	+	28089888,28102549	28090521,28102790	0.875000
right_atrium_auricular_region_female_adult_51_years	chr13	113485593	113485605	113485593	-	RAMPAGE_only	19	20	40	2.195011	4.512815	chr13	113485255	113485582	LINE|RTE-X|L4_B_Mam	-	chr13	113459311	113490608	DCUN1D2|ENST00000438545.6	-	113459311,113461053,113462739,113474123,113480574,113483839,113490432	113459408,113461136,113462891,113474254,113480743,113484056,113490608	0.950000
right_atrium_auricular_region_female_adult_51_years	chr12	94996905	94996906	94996905	-	High_confidence	15	15	15	0.823129	3.056565	chr12	94996903	94997043	SINE|MIR|MIR3	+	chr12	94971331	94997447	NDUFA12|ENST00000550187.5	-	94971331,94994169,94997307	94971620,94994257,94997447	1.000000
right_atrium_auricular_region_female_adult_51_years	chr12	46470182	46470201	46470198	+	RAMPAGE_only	12	12	32	1.756009	4.039212	chr12	46469980	46470323	LTR|ERVL-MaLR|MLT1B	+	chr12	46537501	46652550	AC008035.1|ENST00000607353.1	+	46537501,46571255,46652389	46537631,46571412,46652550	0.781250
right_atrium_auricular_region_female_adult_51_years	chr18	50659295	50659335	50659295	+	High_confidence	4	4	14	0.768254	3.324863	chr18	50659243	50659313	DNA|hAT-Tip100|MER91B	-	chr18	50659301	50731825	STRG.29648.1	+	50659301,50663088,50715078,50721937,50725961,50729157	50659460,50664504,50715223,50722099,50726175,50731825	0.928571
right_atrium_auricular_region_female_adult_51_years	chr1	231847665	231847676	231847665	-	High_confidence	9	10	15	0.823129	3.521641	chr1	231847541	231847935	LINE|L2|L2a	+	chr1	231812512	231847700	STRG.2933.1	-	231812512,231822724,231847518	231814291,231822834,231847700	0.800000
right_atrium_auricular_region_female_adult_51_years	chr3	29280838	29280877	29280869	-	High_confidence	4	4	22	1.207256	3.784184	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.818182
right_atrium_auricular_region_female_adult_51_years	chr8	39083057	39083070	39083065	+	RAMPAGE_only	4	8	21	1.152381	3.046381	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.857143
right_atrium_auricular_region_female_adult_51_years	chr10	122127024	122127025	122127024	+	High_confidence	43	43	48	2.634013	4.708132	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.666667
right_atrium_auricular_region_female_adult_51_years	chr20	18794077	18794086	18794085	+	High_confidence	7	7	20	1.097505	3.616349	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.950000
right_atrium_auricular_region_female_adult_51_years	chr5	109383456	109383495	109383475	-	High_confidence	2	2	10	0.548753	2.725481	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.900000
right_atrium_auricular_region_female_adult_51_years	chr1	20028387	20028426	20028407	+	High_confidence	34	38	102	5.597278	6.034000	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028429	20091158	PLA2G5|ENST00000465698.5	+	20028429,20059631,20068872,20084820,20086082,20088824,20089788,20090567	20028709,20059692,20069032,20084870,20086227,20088943,20089895,20091158	0.882353
right_atrium_auricular_region_female_adult_51_years	chr5	168231323	168231353	168231323	-	RAMPAGE_only	11	12	24	1.317006	4.055958	chr5	168231281	168231495	LINE|L2|L2b	-	chr5	168229582	168232357	CTB-178M22.2|ENST00000519795.1	-	168229582,168230885,168232303	168229860,168231056,168232357	0.958333
right_atrium_auricular_region_female_adult_51_years	chr12	18753699	18753726	18753699	+	High_confidence	21	21	52	2.853514	4.997791	chr12	18753545	18754527	LTR|ERV1|LTR1D	-	chr12	18753632	18799972	STRG.22096.1	+	18753632,18773347,18796433,18797400	18753770,18773390,18796496,18799972	0.711538
right_atrium_auricular_region_female_adult_51_years	chr21	28090267	28090340	28090339	+	High_confidence	20	23	73	4.005895	3.947877	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.986301
right_atrium_auricular_region_female_adult_51_years	chr3	536176	536239	536198	+	High_confidence	28	30	144	7.902039	5.811302	chr3	535186	536320	LTR|ERV1|LTR12D	-	chr3	536230	846015	LINC01266|ENST00000420823.5	+	536230,592104,750214,840714,842375	536327,592183,750250,840810,846015	0.562500
right_atrium_auricular_region_female_adult_51_years	chr6	6739070	6739096	6739081	-	High_confidence	3	3	15	0.823129	3.640224	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6704670	6739030	AL031123.1|ENST00000648205.1	-	6704670,6710871,6711696,6738908	6705078,6711059,6711858,6739030	0.733333
right_atrium_auricular_region_female_adult_51_years	chr1	1655477	1655481	1655480	-	RAMPAGE_only	5	5	10	0.548753	2.725481	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.700000
right_atrium_auricular_region_female_adult_51_years	chr1	196404228	196404273	196404272	-	High_confidence	31	44	96	5.268026	4.115539	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225778	196404260	STRG.2475.1	-	196225778,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404260	0.885417
right_atrium_auricular_region_female_adult_51_years	chr5	997313	997334	997318	-	High_confidence	107	115	377	20.687977	6.287713	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.965517
right_atrium_auricular_region_female_adult_51_years	chr1	7913248	7913268	7913248	-	RAMPAGE_only	7	7	15	0.823129	3.773557	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.600000
right_atrium_auricular_region_female_adult_51_years	chr19	17336684	17336720	17336684	+	High_confidence	2	4	9	0.493877	2.750000	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.666667
right_atrium_auricular_region_female_adult_51_years	chr4	102431241	102431249	102431241	-	High_confidence	3	3	11	0.603628	3.095795	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	1.000000
right_atrium_auricular_region_female_adult_51_years	chr15	92591523	92591566	92591558	+	RAMPAGE_only	6	6	16	0.878004	3.452820	chr15	92591487	92591582	LINE|RTE-X|L4_A_Mam	+	chr15	92598557	92600537	AC091544.2|ENST00000625146.1	+	92598557	92600537	0.687500
right_atrium_auricular_region_female_adult_51_years	chr4	184537558	184537596	184537577	-	High_confidence	5	5	26	1.426757	3.723074	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.884615
right_atrium_auricular_region_female_adult_51_years	chr21	28090390	28090428	28090409	+	High_confidence	7	7	22	1.207256	3.118078	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	1.000000
right_atrium_auricular_region_female_adult_51_years	chr18	24326497	24326622	24326594	+	High_confidence	60	86	405	22.224484	5.474076	chr18	24326304	24326623	LTR|ERVL-MaLR|MLT1O	+	chr18	24326441	24402595	STRG.29462.1	+	24326441,24328062,24335320,24335925,24359991,24360848,24401099	24326735,24328185,24335513,24336110,24360111,24360923,24402595	0.874074
right_atrium_auricular_region_female_adult_51_years	chr9	121281000	121281025	121281000	+	RAMPAGE_only	3	3	16	0.878004	3.456565	chr9	121280857	121281205	LINE|CR1|CR1-3_Croc	+	chr9	121268167	121332843	GSN|ENST00000449733.7	+	121268167,121281469,121282438,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121268219,121281562,121282550,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332843	0.687500
right_atrium_auricular_region_female_adult_51_years	chr1	78620056	78620057	78620056	+	High_confidence	5	8	8	0.439002	2.750000	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78619921	78628207	IFI44L|ENST00000452835.1	+	78619921,78620456,78627905	78620058,78620571,78628207	0.500000
right_atrium_auricular_region_female_adult_51_years	chr2	240022215	240022227	240022216	-	RAMPAGE_only	3	5	10	0.548753	2.947703	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.900000
right_atrium_auricular_region_female_adult_51_years	chr9	98943562	98943576	98943562	+	High_confidence	6	6	15	0.823129	3.378783	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.933333
right_atrium_auricular_region_female_adult_51_years	chr7	150823592	150823598	150823592	-	RAMPAGE_only	5	5	11	0.603628	3.121928	chr7	150823060	150823714	LTR|ERV1|MER51D	+	chr7	150791286	150801360	TMEM176B|NM_014020.3	-	150791286,150792055,150793087,150793543,150793960,150796365,150800992	150791623,150792175,150793315,150793600,150794071,150796574,150801360	0.727273
right_atrium_auricular_region_female_adult_51_years	chr4	119128277	119128294	119128293	-	High_confidence	69	69	153	8.395916	5.986897	chr4	119128208	119128490	LINE|L2|L2	+	chr4	119117611	119128279	STRG.8887.2	-	119117611,119128197	119120101,119128279	0.843137
right_atrium_auricular_region_female_adult_51_years	chr3	9973634	9973697	9973634	-	RAMPAGE_only	4	4	17	0.932880	3.327820	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.941176
right_atrium_auricular_region_female_adult_51_years	chr6	31400605	31400618	31400605	-	High_confidence	21	21	34	1.865759	3.984234	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31399156	31400605	STRG.12224.3	-	31399156	31400605	1.000000
right_atrium_auricular_region_female_adult_51_years	chr22	42644615	42644646	42644621	-	High_confidence	15	16	77	4.225396	4.432598	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	1.000000
right_atrium_auricular_region_female_adult_51_years	chr10	133369963	133370021	133369995	-	RAMPAGE_only	5	5	27	1.481632	3.940073	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
right_atrium_auricular_region_female_adult_51_years	chr13	106561994	106562034	106561994	-	High_confidence	3	3	10	0.548753	2.921928	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	1.000000
right_atrium_auricular_region_female_adult_51_years	chr5	140633644	140633647	140633646	-	High_confidence	3	4	7	0.384127	2.584963	chr5	140633624	140633721	LINE|CR1|L3	+	chr5	140632343	140633651	CD14|ENST00000498971.6	-	140632343,140633068,140633530	140632980,140633192,140633651	0.571429
right_atrium_auricular_region_female_adult_51_years	chr1	31373705	31373706	31373705	-	High_confidence	6	6	8	0.439002	3.000000	chr1	31373523	31373667	SINE|MIR|MIRb	-	chr1	31365252	31373288	FABP3|NM_001320996.1	-	31365252,31367392,31369384,31372941	31365939,31367494,31369590,31373288	0.500000
right_atrium_auricular_region_female_adult_51_years	chr9	121286546	121286609	121286600	+	High_confidence	46	46	237	13.005439	6.455685	chr9	121286415	121286709	LINE|L2|L2b	+	chr9	121286591	121332656	GSN|ENST00000545652.6	+	121286591,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286761,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332656	0.966245
right_atrium_auricular_region_female_adult_51_years	chr1	51297945	51297976	51297974	-	High_confidence	6	8	16	0.878004	3.875000	chr1	51297625	51298239	LINE|L2|L2a	+	chr1	51287257	51297961	TTC39A|NM_001297666.1	-	51287257,51288838,51290004,51290513,51294390,51296078,51297790	51288280,51288955,51290119,51290625,51294511,51296170,51297961	1.000000
right_atrium_auricular_region_female_adult_51_years	chr15	58865729	58865762	58865738	-	High_confidence	5	6	14	0.768254	3.392747	chr15	58865655	58865936	LTR|ERVL|MER77	-	chr15	58864390	58865758	STRG.25790.1	-	58864390	58865758	0.785714
right_atrium_auricular_region_female_adult_51_years	chr10	124678197	124678198	124678197	-	RAMPAGE_only	4	6	6	0.329252	2.584963	chr10	124678125	124678223	LINE|CR1|L3	-	chr10	124621670	124742970	FAM53B|ENST00000392754.7	-	124621670,124681606,124696157,124706635,124742427	124623604,124682379,124696212,124706887,124742970	0.666667
right_atrium_auricular_region_female_adult_51_years	chr15	91408711	91408716	91408715	+	High_confidence	5	8	15	0.823129	3.467720	chr15	91408656	91408747	SINE|MIR|MIRc	-	chr15	91408707	91605211	CRAT37|ENST00000555947.5	+	91408707,91473220,91604876	91408841,91473316,91605211	0.533333
right_atrium_auricular_region_female_adult_51_years	chr9	33068839	33068860	33068839	-	RAMPAGE_only	3	3	14	0.768254	2.815072	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.928571
right_atrium_auricular_region_female_adult_51_years	chr7	154928492	154928504	154928503	+	High_confidence	9	9	17	0.932880	3.702820	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.823529
right_atrium_auricular_region_female_adult_51_years	chr17	76747933	76747936	76747933	+	High_confidence	4	5	10	0.548753	2.947703	chr17	76747916	76748199	LINE|L2|L2a	-	chr17	76747930	76775090	MFSD11|ENST00000585958.5	+	76747930,76754046,76767385,76769745,76774996	76748061,76754204,76767451,76769871,76775090	0.500000
right_atrium_auricular_region_female_adult_51_years	chr12	101824058	101824077	101824058	-	RAMPAGE_only	14	17	29	1.591383	4.083617	chr12	101824004	101824405	LTR|ERVL-MaLR|MLT1K	+	chr12	101767909	101830818	GNPTAB|ENST00000549940.5	-	101767909,101770020,101770405,101770995,101780151,101780556,101786011,101788547,101789937,101796676,101830558	101768160,101770191,101770585,101771157,101780286,101780621,101786217,101788589,101790057,101796762,101830818	0.965517
right_atrium_auricular_region_female_adult_51_years	chr10	72176854	72176914	72176854	-	RAMPAGE_only	8	10	41	2.249886	4.815312	chr10	72176827	72177143	LINE|L2|L2c	+	chr10	72097040	72161556	ASCC1|ENST00000530394.5	-	72097040,72102333,72128081,72133056,72152868,72161537	72097450,72102412,72128167,72133181,72152988,72161556	0.878049
right_atrium_auricular_region_female_adult_51_years	chr1	161206434	161206446	161206434	+	High_confidence	2	3	7	0.384127	2.521641	chr1	161206361	161206444	SINE|tRNA|LFSINE_Vert	+	chr1	161206408	161214239	STRG.2124.3	+	161206408,161209192,161209482,161209856,161210110,161210303,161210590,161212350,161213379,161213648,161213863,161214155	161206597,161209313,161209595,161209931,161210188,161210389,161210710,161212480,161213475,161213732,161213921,161214239	1.000000
right_atrium_auricular_region_female_adult_51_years	chr11	66192425	66192509	66192499	+	High_confidence	9	9	70	3.841269	5.365118	chr11	66192188	66192558	LINE|L2|L2b	-	chr11	66192331	66216250	STRG.20831.5	+	66192331,66193485,66210361,66211133,66216118	66192630,66193573,66210451,66211259,66216250	0.842857
right_atrium_auricular_region_female_adult_51_years	chr22	17917780	17917811	17917782	-	RAMPAGE_only	4	6	16	0.878004	3.500000	chr22	17917754	17917859	LINE|L2|L2a	+	chr22	17834334	17906886	MICAL3|NM_001122731.2	-	17834334,17841821,17864898,17865923,17871836,17885877,17887169,17887322,17889033,17891484,17893807,17895283,17896245,17896723,17899447,17900841,17901877,17902630,17904631,17906548	17834549,17842017,17864986,17866012,17872023,17886051,17887232,17887435,17889230,17891632,17893904,17895410,17896361,17896981,17899548,17900997,17901979,17902747,17904839,17906886	0.937500
right_atrium_auricular_region_female_adult_51_years	chr2	219425186	219425187	219425186	+	RAMPAGE_only	8	8	8	0.439002	3.000000	chr2	219424901	219425196	SINE|Alu|AluSg	-	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	1.000000
right_atrium_auricular_region_female_adult_51_years	chr1	241504042	241504082	241504052	-	RAMPAGE_only	3	3	12	0.658503	2.913977	chr1	241503964	241504054	SINE|MIR|MIRc	+	chr1	241497602	241519761	FH|ENST00000366560.3	-	241497602,241500436,241502442,241504041,241506002,241508602,241511966,241513602,241517181,241519590	241497970,241500590,241502570,241504245,241506168,241508785,241512143,241513713,241517316,241519761	0.916667
right_atrium_auricular_region_female_adult_51_years	chr11	12249224	12249239	12249238	+	RAMPAGE_only	3	3	7	0.384127	2.521641	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	1.000000
right_atrium_auricular_region_female_adult_51_years	chr12	46243232	46243236	46243235	-	RAMPAGE_only	3	3	8	0.439002	2.521641	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.875000
right_atrium_auricular_region_female_adult_51_years	chr9	62376790	62376801	62376790	-	High_confidence	32	32	50	2.743763	3.444458	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.960000
right_atrium_auricular_region_female_adult_51_years	chr9	63325773	63325826	63325805	-	High_confidence	12	19	51	2.798639	4.897055	chr9	63325357	63326104	LINE|L2|L2b	+	chr9	63299254	63325850	STRG.17726.3	-	63299254,63309141,63325467	63299534,63309312,63325850	0.843137
right_atrium_auricular_region_female_adult_51_years	chrX	48683361	48683362	48683361	+	High_confidence	4	6	6	0.329252	2.584963	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
right_atrium_auricular_region_female_adult_51_years	chr2	37020137	37020138	37020137	-	RAMPAGE_only	11	11	13	0.713379	3.392747	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	37008167	37013995	HEATR5B|ENST00000471051.1	-	37008167,37013840	37008848,37013995	0.692308
right_atrium_auricular_region_female_adult_51_years	chr7	38789812	38789830	38789812	-	RAMPAGE_only	3	4	7	0.384127	2.807355	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	1.000000
right_atrium_auricular_region_female_adult_51_years	chr7	134527596	134527597	134527596	+	High_confidence	12	12	12	0.658503	2.751629	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	1.000000
right_atrium_auricular_region_female_adult_51_years	chr12	131000399	131000426	131000412	+	RAMPAGE_only	4	7	24	1.317006	3.653107	chr12	131000459	131000769	SINE|Alu|AluSx1	+	chr12	131002498	131141460	ADGRD1|ENST00000376682.8	+	131002498,131003184,131004185,131005971,131014198,131076800,131084539,131104830,131105753,131108723,131118384,131120846,131131724,131136036,131136972,131138136,131139167	131002837,131003302,131004296,131006047,131014340,131076874,131084663,131104934,131105865,131108877,131118451,131120913,131131816,131136163,131137014,131138229,131141460	0.958333
right_atrium_auricular_region_female_adult_51_years	chr3	42718409	42718436	42718409	+	High_confidence	2	2	6	0.329252	2.584963	chr3	42718039	42718591	LTR|ERV1|MER41A	+	chr3	42719234	42723064	STRG.5957.2	+	42719234,42721527,42722148	42719318,42721650,42723064	0.500000
right_atrium_auricular_region_female_adult_51_years	chr2	231072226	231072272	231072271	+	RAMPAGE_only	2	2	9	0.493877	2.947703	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	1.000000
right_atrium_auricular_region_female_adult_51_years	chr15	71691468	71691547	71691522	-	High_confidence	16	16	72	3.951019	5.537845	chr15	71691454	71691674	SINE|MIR|MIRb	+	chr15	71688700	71691539	THSD4-AS2|NR_120346.1	-	71688700,71690659,71691365	71690554,71690770,71691539	0.805556
right_atrium_auricular_region_female_adult_51_years	chr1	202582347	202582366	202582365	+	RAMPAGE_only	4	5	17	0.932880	3.454822	chr1	202581884	202582432	LINE|CR1|L3	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	1.000000
right_atrium_auricular_region_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	369	504	1013	55.588648	4.897549	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.992103
right_atrium_auricular_region_female_adult_51_years	chr8	123413352	123413365	123413364	-	RAMPAGE_only	6	6	11	0.603628	2.721928	chr8	123412758	123413395	LTR|ERV1|MER67B	+	chr8	123320501	123416350	ATAD2|ENST00000521903.5	-	123320501,123322937,123325892,123328189,123333877,123334199,123336372,123337624,123339310,123344883,123346085,123346617,123347091,123348186,123349284,123356388,123357561,123359220,123359576,123361538,123369057,123369820,123370902,123371235,123371669,123372636,123380528,123400742,123416247	123321175,123323066,123326026,123328579,123334021,123334322,123336532,123337821,123339446,123345069,123346272,123346750,123347406,123348273,123349421,123356477,123357736,123359336,123359685,123361646,123369175,123370024,123370990,123371338,123371835,123372686,123380677,123401175,123416350	0.818182
right_atrium_auricular_region_female_adult_51_years	chr1	205512286	205512317	205512316	+	RAMPAGE_only	8	8	14	0.768254	3.334679	chr1	205512088	205512401	LINE|L2|L2	-	chr1	205504801	205527825	CDK18|ENST00000419301.1	+	205504801,205523146,205523482,205524231,205525138,205526064,205526366,205526774,205527793	205504878,205523297,205523715,205524357,205525195,205526179,205526461,205526837,205527825	0.857143
right_atrium_auricular_region_female_adult_51_years	chr16	75305460	75305494	75305493	-	High_confidence	4	4	13	0.713379	3.238901	chr16	75305482	75305675	SINE|MIR|MIR	+	chr16	75293907	75305438	CFDP1|ENST00000562602.1	-	75293907,75301756,75305023	75294042,75301905,75305438	0.538462
right_atrium_auricular_region_female_adult_51_years	chr9	33393832	33393866	33393843	-	High_confidence	4	4	18	0.987755	3.616875	chr9	33393691	33394003	LINE|L2|L2b	+	chr9	33385505	33394176	AQP7|ENST00000447660.3	-	33385505,33386076,33386403,33393796	33385866,33386195,33386541,33394176	0.555556
right_atrium_auricular_region_female_adult_51_years	chr14	50756826	50756834	50756826	-	RAMPAGE_only	4	4	12	0.658503	2.855389	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
right_atrium_auricular_region_female_adult_51_years	chr16	23141214	23141254	23141224	-	RAMPAGE_only	13	14	51	2.798639	5.084190	chr16	23140602	23141239	LINE|L2|L2	+	chr16	23061405	23149270	USP31|ENST00000219689.11	-	23061405,23072044,23073721,23079945,23082437,23084859,23085584,23087091,23087723,23090623,23102318,23105440,23106212,23106398,23108045,23148637	23069616,23072197,23073880,23080171,23082557,23084989,23085662,23087186,23087835,23090804,23102463,23105576,23106305,23106487,23108183,23149270	0.823529
right_atrium_auricular_region_female_adult_51_years	chr11	119314498	119314527	119314498	-	RAMPAGE_only	2	2	13	0.713379	3.084963	chr11	119314166	119314455	SINE|Alu|AluJr	-	chr11	119308528	119317116	MCAM|ENST00000264036.5	-	119308528,119310348,119310755,119311089,119311279,119311529,119311807,119312051,119312265,119312526,119312769,119314488,119314678,119314832,119315138,119317034	119309915,119310466,119310903,119311185,119311421,119311651,119311949,119312170,119312428,119312648,119312949,119314576,119314749,119315040,119315263,119317116	0.923077
right_atrium_auricular_region_female_adult_51_years	chr17	1659356	1659357	1659356	-	RAMPAGE_only	5	5	7	0.384127	2.521641	chr17	1659014	1659325	SINE|Alu|AluSx3	-	chr17	1650630	1684837	PRPF8|ENST00000572621.5	-	1650630,1651107,1651413,1651647,1653541,1653776,1655349,1656391,1656647,1658252,1658525,1659356,1659840,1660431,1660697,1660992,1661270,1661610,1661905,1673080,1673356,1673745,1674441,1675151,1675619,1675927,1676206,1676504,1676975,1677564,1678517,1678761,1679016,1679290,1679608,1680725,1680928,1681477,1681819,1682128,1683532,1684471	1650956,1651310,1651553,1651788,1653683,1654016,1655543,1656565,1656761,1658381,1658763,1659548,1660001,1660578,1660827,1661162,1661406,1661790,1662153,1673197,1673567,1673892,1674680,1675339,1675812,1676054,1676370,1676711,1677172,1677694,1678652,1678881,1679206,1679410,1679799,1680831,1681054,1681690,1682038,1682293,1683701,1684837	1.000000
right_atrium_auricular_region_female_adult_51_years	chr8	93794817	93794879	93794823	+	High_confidence	130	143	512	28.096138	6.777370	chr8	93794713	93794824	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.988281
right_atrium_auricular_region_female_adult_51_years	chr3	99962044	99962055	99962049	+	RAMPAGE_only	5	5	15	0.823129	2.866248	chr3	99961963	99962273	LINE|L2|L2c	-	chr3	99817882	100172404	CMSS1|ENST00000491299.5	+	99817882,100141529,100146972,100160429,100162302,100166334,100167737,100171838,100172315	99818043,100141645,100147061,100160501,100162432,100166394,100167840,100171899,100172404	1.000000
right_atrium_auricular_region_female_adult_51_years	chr1	63487956	63487959	63487958	+	High_confidence	23	37	46	2.524262	4.741031	chr1	63487767	63487999	DNA|TcMar-Tigger|Tigger3b	-	chr1	63487967	63518544	STRG.1037.1	+	63487967,63507319,63517755	63488277,63507607,63518544	0.804348
right_atrium_auricular_region_female_adult_51_years	chr7	101217578	101217595	101217578	-	High_confidence	6	6	21	1.152381	4.037401	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.904762
right_atrium_auricular_region_female_adult_51_years	chr7	30923928	30924003	30923963	+	RAMPAGE_only	6	6	48	2.634013	4.763967	chr7	30923921	30924027	DNA|hAT-Tip100|MamTip2	+	chr7	30921503	30925516	AQP1|NM_001185062.1	+	30921503,30922065,30922563,30923449	30921624,30922230,30922644,30925516	0.937500
right_atrium_auricular_region_female_adult_51_years	chr1	95042514	95042545	95042544	-	RAMPAGE_only	3	3	9	0.493877	3.169925	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.777778
right_atrium_auricular_region_female_adult_51_years	chr17	75833306	75833329	75833306	-	RAMPAGE_only	21	21	54	2.963265	5.421554	chr17	75833179	75833712	LINE|L2|L2a	+	chr17	75829661	75830661	UNC13D|ENST00000590856.1	-	75829661,75830361,75830577	75830151,75830482,75830661	0.574074
right_atrium_auricular_region_female_adult_51_years	chr22	35611872	35611962	35611961	-	RAMPAGE_only	5	6	19	1.042630	3.181366	chr22	35611957	35612110	SINE|MIR|MIRb	-	chr22	35606763	35615713	MB|ENST00000401702.5	-	35606763,35610883,35615573	35607443,35611106,35615713	1.000000
right_atrium_auricular_region_female_adult_51_years	chr12	12927723	12927734	12927733	+	High_confidence	29	29	57	3.127890	5.161580	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.508772
right_atrium_auricular_region_female_adult_51_years	chr19	5680240	5680261	5680248	-	High_confidence	66	72	247	13.554192	5.867461	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.975709
right_atrium_auricular_region_female_adult_51_years	chr7	135931369	135931401	135931400	+	RAMPAGE_only	3	3	8	0.439002	2.807355	chr7	135931143	135931451	LINE|L2|L2c	-	chr7	135926454	135932881	AC015987.1|ENST00000419211.1	+	135926454,135932208	135926585,135932881	0.750000
right_atrium_auricular_region_female_adult_51_years	chr5	149513648	149513670	149513669	-	High_confidence	9	9	28	1.536508	4.378783	chr5	149513617	149513915	SINE|Alu|AluSz6	+	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.928571
right_atrium_auricular_region_female_adult_51_years	chr12	29317865	29317881	29317865	-	High_confidence	3	3	9	0.493877	3.169925	chr12	29317690	29317914	SINE|MIR|MIRb	-	chr12	29293094	29317864	STRG.22211.1	-	29293094,29307849,29309770,29317707	29293540,29308044,29309903,29317864	0.555556
right_atrium_auricular_region_female_adult_51_years	chr16	3129654	3129669	3129668	-	High_confidence	3	3	6	0.329252	2.584963	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3125599	3129554	ZNF213-AS1|ENST00000573414.1	-	3125599,3129460	3125966,3129554	0.666667
right_atrium_auricular_region_female_adult_51_years	chr7	80594424	80594450	80594424	+	RAMPAGE_only	4	6	25	1.371882	3.863465	chr7	80594254	80594543	SINE|Alu|AluJo	-	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.800000
right_atrium_auricular_region_female_adult_51_years	chr2	216555468	216555543	216555503	+	RAMPAGE_only	4	4	26	1.426757	3.803509	chr2	216555269	216555750	LTR|ERVL-MaLR|MLT1G1	+	chr2	216498854	216579180	RPL37A|ENST00000446558.5	+	216498854,216499269,216499948,216578920	216498877,216499398,216500031,216579180	0.576923
right_atrium_auricular_region_female_adult_51_years	chr5	148452873	148452915	148452873	+	High_confidence	87	87	206	11.304306	6.687087	chr5	148452775	148452912	LINE|L2|L2a	-	chr5	148452784	148559987	STRG.11454.1	+	148452784,148468919,148550084,148559574	148453172,148469017,148550351,148559987	0.830097
right_atrium_auricular_region_female_adult_51_years	chr5	139364711	139364719	139364718	+	RAMPAGE_only	5	8	19	1.042630	3.576618	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.894737
right_atrium_auricular_region_female_adult_51_years	chr6	155282784	155282820	155282798	-	RAMPAGE_only	5	5	21	1.152381	3.630413	chr6	155282731	155283026	SINE|Alu|AluY	-	chr6	155257652	155297069	TFB1M|ENST00000468889.5	-	155257652,155260272,155285157,155296952	155257908,155260400,155285277,155297069	0.571429
right_atrium_auricular_region_female_adult_51_years	chr14	50756874	50756960	50756928	-	RAMPAGE_only	7	7	35	1.920634	4.476064	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.942857
right_atrium_auricular_region_female_adult_51_years	chr12	10710653	10710654	10710653	-	High_confidence	28	28	29	1.591383	3.676945	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.758621
right_atrium_auricular_region_female_adult_51_years	chr20	64265522	64265530	64265522	+	High_confidence	7	7	17	0.932880	3.528064	chr20	64265443	64265603	SINE|MIR|MIR	-	chr20	64265511	64273545	PCMTD2|ENST00000609818.1	+	64265511,64267886,64273220	64265613,64268010,64273545	1.000000
right_atrium_auricular_region_female_adult_51_years	chr10	113662680	113662737	113662690	-	RAMPAGE_only	9	9	34	1.865759	4.657882	chr10	113662586	113662659	LINE|L1|L1MA4A	-	chr10	113588715	113664046	NRAP|ENST00000369360.7	-	113588715,113589665,113590577,113592193,113595622,113597085,113597968,113604608,113605761,113606177,113608413,113610458,113612233,113614182,113614838,113615711,113617454,113620603,113621868,113623528,113624825,113626046,113628916,113629587,113631508,113631852,113633083,113634111,113640226,113641364,113645824,113646922,113650036,113650437,113651802,113652934,113654020,113657469,113662678,113663351,113663810	113589079,113589797,113590889,113592301,113595727,113597184,113598073,113604920,113605869,113606282,113608512,113610563,113612431,113614296,113614946,113615816,113617553,113620708,113622180,113623636,113624930,113626145,113629021,113629785,113631630,113631964,113633188,113634210,113640331,113641472,113645941,113647027,113650141,113650545,113651907,113653039,113654125,113657574,113662766,113663446,113664046	0.941176
right_atrium_auricular_region_female_adult_51_years	chr9	117252795	117252796	117252795	+	RAMPAGE_only	37	44	44	2.414512	4.401947	chr9	117252607	117252810	SINE|MIR|MIRb	-	chr9	117257672	117258063	STRG.18280.1	+	117257672	117258063	0.931818
right_atrium_auricular_region_female_adult_51_years	chr9	110170834	110170925	110170834	+	RAMPAGE_only	9	9	59	3.237641	4.210962	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
right_atrium_auricular_region_female_adult_51_years	chr11	72111466	72111497	72111466	-	High_confidence	4	5	14	0.768254	3.238901	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72110163	72111483	ANAPC15|ENST00000438939.6	-	72110163,72110543,72111156,72111441	72110261,72110603,72111286,72111483	0.500000
right_atrium_auricular_region_female_adult_51_years	chr19	53874902	53874903	53874902	+	RAMPAGE_only	48	48	49	2.688888	4.462581	chr19	53874763	53874953	SINE|Alu|AluSx	-	chr19	53869405	53876435	MYADM|ENST00000391769.2	+	53869405,53869753,53873527	53869598,53869838,53876435	0.979592
right_atrium_auricular_region_female_adult_51_years	chr9	129698737	129698744	129698737	+	RAMPAGE_only	3	3	7	0.384127	2.584963	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129720632	129722653	STRG.18483.1	+	129720632,129722216	129720774,129722653	0.571429
right_atrium_auricular_region_female_adult_51_years	chr6	2949672	2949676	2949672	-	High_confidence	16	18	33	1.810884	4.750000	chr6	2949217	2950248	LINE|L2|L2a	+	chr6	2948195	2949661	STRG.11874.12	-	2948195,2948913,2949429	2948699,2949069,2949661	0.909091
right_atrium_auricular_region_female_adult_51_years	chr8	2036904	2036934	2036933	+	RAMPAGE_only	3	3	8	0.439002	2.521641	chr8	2036486	2037394	LINE|L2|L2b	-	chr8	2045039	2145456	MYOM2|ENST00000262113.8	+	2045039,2050754,2052157,2057347,2057622,2059152,2069277,2069446,2072344,2073338,2076140,2078733,2079559,2085262,2090007,2092345,2093969,2096246,2098856,2100875,2102666,2106241,2106490,2108785,2109394,2115959,2116215,2117884,2123251,2123554,2124178,2129126,2140722,2141140,2142374,2143400,2144663	2045168,2050873,2052313,2057486,2057780,2059245,2069366,2069497,2072509,2073500,2076282,2078933,2079613,2085390,2090191,2092520,2094091,2096434,2098983,2101054,2102781,2106398,2106597,2108830,2109531,2116104,2116275,2117952,2123365,2123642,2124217,2129232,2140886,2141177,2142397,2143456,2145456	0.875000
right_atrium_auricular_region_female_adult_51_years	chr16	23595902	23595906	23595905	-	High_confidence	8	8	14	0.768254	3.521641	chr16	23595758	23595926	SINE|MIR|MIRb	-	chr16	23581032	23596303	NDUFAB1|ENST00000484769.1	-	23581032,23582275,23585335,23587196,23595428,23596122	23581173,23582375,23585423,23587319,23595638,23596303	0.642857
right_atrium_auricular_region_female_adult_51_years	chr11	12277580	12277595	12277580	+	RAMPAGE_only	23	41	112	6.146030	5.098575	chr11	12277475	12277670	LINE|L2|L2b	-	chr11	12274313	12294745	MICAL2|ENST00000644505.1	+	12274313,12275982,12280932,12287086,12292142,12293560	12274695,12276166,12281099,12287164,12292297,12294745	0.964286
right_atrium_auricular_region_female_adult_51_years	chr7	112956581	112956617	112956616	-	RAMPAGE_only	4	4	10	0.548753	3.321928	chr7	112956597	112956681	LTR|ERVL-MaLR|MLT1M	+	chr7	112949573	112967077	STRG.15111.1	-	112949573,112956521	112954768,112967077	0.900000
right_atrium_auricular_region_female_adult_51_years	chr8	144106344	144106367	144106364	+	High_confidence	3	3	14	0.768254	3.546594	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.642857
right_atrium_auricular_region_female_adult_51_years	chr8	116730249	116730291	116730249	-	RAMPAGE_only	15	17	36	1.975510	4.558814	chr8	116730180	116730513	DNA|hAT-Charlie|MER1B	+	chr8	116648805	116755784	EIF3H|ENST00000518949.5	-	116648805,116655855,116657214,116658812,116697052,116755665	116648926,116656005,116657314,116658980,116697237,116755784	0.833333
right_atrium_auricular_region_female_adult_51_years	chr5	79481730	79481791	79481790	-	RAMPAGE_only	42	42	151	8.286166	5.212409	chr5	79481262	79481938	LINE|L1|L1MEc	+	chr5	79375929	79512794	HOMER1|ENST00000508576.5	-	79375929,79439009,79447052,79450989,79456861,79512769	79376197,79439149,79447145,79451121,79457018,79512794	0.933775
right_atrium_auricular_region_female_adult_51_years	chr4	47801582	47801615	47801614	-	RAMPAGE_only	14	14	35	1.920634	4.594672	chr4	47801348	47803138	LINE|L1|L1M1	+	chr4	47595481	47790260	CORIN|ENST00000508498.5	-	47595481,47600213,47603396,47623570,47623898,47626404,47641919,47643145,47645080,47653552,47661710,47665031,47674392,47677937,47680140,47683730,47692969,47744401,47763378,47786724,47790220	47595903,47600347,47603668,47623745,47623948,47626521,47642049,47643256,47645194,47653660,47661856,47665263,47674500,47678054,47680251,47683838,47693083,47744583,47763586,47786925,47790260	0.857143
right_atrium_auricular_region_female_adult_51_years	chr1	200411799	200411826	200411799	+	High_confidence	2	2	8	0.439002	2.521641	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411799	200475513	AC104461.1|ENST00000634596.1	+	200411799,200473908	200411962,200475513	0.625000
right_atrium_auricular_region_female_adult_51_years	chr14	102235458	102235481	102235458	-	High_confidence	8	8	14	0.768254	3.521641	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228824	102235455	STRG.25101.1	-	102228824,102231706,102232534,102233687,102235364	102229657,102231821,102232708,102233789,102235455	0.857143
right_atrium_auricular_region_female_adult_51_years	chr19	3062922	3062983	3062982	-	High_confidence	121	126	538	29.522895	6.195648	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.983271
right_atrium_auricular_region_female_adult_51_years	chr2	3533905	3533935	3533934	-	High_confidence	120	128	306	16.791833	6.029594	chr2	3533849	3534784	LTR|ERV1|LTR27E	+	chr2	3531983	3533782	AC108488.1|ENST00000439547.5	-	3531983,3533107,3533710	3532310,3533190,3533782	0.977124
right_atrium_auricular_region_female_adult_51_years	chr1	116390239	116390392	116390280	+	RAMPAGE_only	8	10	72	3.951019	4.575212	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.944444
right_atrium_auricular_region_female_adult_51_years	chr4	86453161	86453232	86453202	-	High_confidence	11	13	70	3.841269	4.341036	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.957143
right_atrium_auricular_region_female_adult_51_years	chr6	43062043	43062060	43062043	+	RAMPAGE_only	7	7	29	1.591383	4.208410	chr6	43061696	43062256	LINE|L2|L2a	-	chr6	43059894	43075087	KLC4|ENST00000394056.6	+	43059894,43060517,43061310,43062916,43065619,43066305,43066995,43070353,43070691,43071274,43071566,43071851,43072146,43072823,43073222,43073901,43074621	43060276,43060605,43061593,43063147,43065701,43066525,43067083,43070455,43070865,43071374,43071619,43071922,43072255,43072964,43073338,43073965,43075087	0.931034
right_atrium_auricular_region_female_adult_51_years	chrX	24662641	24662660	24662659	+	High_confidence	4	4	12	0.658503	2.550341	chrX	24662451	24662978	LTR|ERVL|LTR75	+	chrX	24662690	24668441	STRG.33481.1	+	24662690,24668137	24662885,24668441	0.916667
right_atrium_auricular_region_female_adult_51_years	chr8	18076054	18076061	18076060	-	High_confidence	379	392	613	33.638540	6.211718	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18066766	18076305	ASAH1|ENST00000637872.1	-	18066766,18069791,18071299,18075540,18076176	18067298,18069878,18071390,18075587,18076305	0.845024
right_atrium_auricular_region_female_adult_51_years	chr15	62815309	62815310	62815309	+	RAMPAGE_only	5	5	8	0.439002	2.750000	chr15	62815347	62815498	LINE|CR1|L3	+	chr15	62740444	62841486	TLN2|ENST00000489129.5	+	62740444,62748350,62750401,62752304,62753772,62761680,62762271,62763562,62766320,62770963,62776763,62781139,62783770,62792640,62796126,62797218,62800367,62800652,62805599,62809924,62819515,62820485,62833503,62835736,62835890,62838855,62840481	62740769,62748444,62750491,62752427,62755693,62761821,62762453,62763695,62766422,62771134,62776910,62781241,62783890,62792787,62796293,62797402,62800493,62800769,62805785,62810032,62819621,62820610,62833629,62835799,62836073,62838981,62841486	1.000000
right_atrium_auricular_region_female_adult_51_years	chr1	56645650	56645705	56645663	+	High_confidence	7	7	23	1.262131	4.095795	chr1	56645691	56645853	SINE|MIR|MIR3	+	chr1	56645387	56715334	PRKAA2|ENST00000610361.1	+	56645387,56671440,56674380,56691393,56692357,56693764,56695934,56703970,56706091,56707474	56645474,56671447,56674522,56691487,56692502,56693852,56696159,56704475,56706218,56715334	0.695652
right_atrium_auricular_region_female_adult_51_years	chr4	107858255	107858256	107858255	+	RAMPAGE_only	5	5	8	0.439002	2.500000	chr4	107857851	107858268	LINE|L2|L2b	+	chr4	107824889	107915047	STRG.8791.2	+	107824889,107858471,107895309,107899574,107903232,107908564,107910349	107825253,107858553,107896008,107899692,107903386,107908731,107915047	0.875000
right_atrium_auricular_region_female_adult_51_years	chr10	20818704	20818727	20818704	-	High_confidence	6	7	10	0.548753	3.121928	chr10	20818659	20818779	LINE|L2|L2b	+	chr10	20813739	20819480	NEBL|ENST00000481592.5	-	20813739,20815624,20817597,20818703,20819423	20814043,20815717,20817692,20818834,20819480	0.500000
right_atrium_auricular_region_female_adult_51_years	chr6	42902750	42902815	42902814	-	High_confidence	8	8	37	2.030385	4.364858	chr6	42902632	42903629	LTR|ERVK|LTR5B	-	chr6	42893918	42902807	STRG.12471.1	-	42893918,42901283,42902524	42894755,42901328,42902807	0.918919
right_atrium_auricular_region_female_adult_51_years	chr6	26957017	26957039	26957038	+	High_confidence	4	4	11	0.603628	3.121928	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26956992	27023924	LINC00240|ENST00000606878.1	+	26956992,26968457,27023253	26957183,26968522,27023924	0.727273
right_atrium_auricular_region_female_adult_51_years	chr3	193614810	193614825	193614823	+	High_confidence	4	5	12	0.658503	2.913977	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.916667
right_atrium_auricular_region_female_adult_51_years	chr7	80594489	80594517	80594489	+	RAMPAGE_only	35	40	196	10.755553	5.744604	chr7	80594254	80594543	SINE|Alu|AluJo	-	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.836735
right_atrium_auricular_region_female_adult_51_years	chr16	23595453	23595478	23595453	-	High_confidence	9	9	16	0.878004	3.373557	chr16	23595357	23595584	DNA|TcMar-Tigger|MER8	-	chr16	23581013	23596277	NDUFAB1|ENST00000562133.5	-	23581013,23582275,23585335,23596122	23581173,23582375,23585423,23596277	0.875000
right_atrium_auricular_region_female_adult_51_years	chr1	196715609	196715718	196715668	+	RAMPAGE_only	6	7	40	2.195011	4.804508	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.975000
right_atrium_auricular_region_female_adult_51_years	chr3	49468637	49468670	49468665	+	High_confidence	5	7	15	0.823129	3.467720	chr3	49468531	49468836	SINE|Alu|AluSx1	-	chr3	49468702	49535618	DAG1|NM_001177643.2	+	49468702,49510418,49530796	49469055,49510819,49535618	0.866667
right_atrium_auricular_region_female_adult_51_years	chr9	128788347	128788373	128788372	+	RAMPAGE_only	4	5	9	0.493877	2.500000	chr9	128788327	128788428	DNA|hAT-Ac|OldhAT1	+	chr9	128787348	128810424	TBC1D13|ENST00000223865.8	+	128787348,128788333,128790734,128791379,128791593,128792491,128797054,128805858,128806253,128807813	128787376,128788407,128790775,128791441,128791693,128792574,128797214,128806019,128806311,128810424	0.777778
right_atrium_auricular_region_female_adult_51_years	chr4	141332616	141332617	141332616	-	High_confidence	268	269	290	15.913828	4.440932	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.958621
right_atrium_auricular_region_female_adult_51_years	chr4	88315673	88315702	88315701	+	RAMPAGE_only	3	3	8	0.439002	3.000000	chr4	88315585	88316433	DNA|TcMar-Tigger|MER6	+	chr4	88284941	88331421	AC107067.1|ENST00000500009.2	+	88284941,88311795,88316685,88319330,88330180	88285061,88311871,88316807,88319425,88331421	0.625000
right_atrium_auricular_region_female_adult_51_years	chr5	160199150	160199156	160199150	+	High_confidence	9	9	15	0.823129	3.189898	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	1.000000
right_atrium_auricular_region_female_adult_51_years	chr9	20658312	20658349	20658312	+	High_confidence	8	8	40	2.195011	4.172574	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.825000
right_atrium_auricular_region_female_adult_51_years	chr1	201360453	201360454	201360453	-	RAMPAGE_only	57	57	57	3.127890	3.792313	chr1	201360361	201360542	SINE|MIR|MIR	-	chr1	201359007	201363350	TNNT2|ENST00000476888.5	-	201359007,201359622,201361278,201361950,201362385,201363295	201359255,201359663,201361369,201362022,201362394,201363350	1.000000
right_atrium_auricular_region_female_adult_51_years	chr1	84797378	84797401	84797400	-	RAMPAGE_only	4	4	9	0.493877	2.947703	chr1	84797239	84797693	LTR|ERVL-MaLR|MLT1C	-	chr1	84781730	84782822	STRG.1194.1	-	84781730	84782822	0.555556
right_atrium_auricular_region_female_adult_51_years	chr3	12994725	12994740	12994739	-	High_confidence	3	3	11	0.603628	3.095795	chr3	12994635	12994703	SINE|MIR|MIRc	-	chr3	12908348	12994384	IQSEC1|ENST00000648386.1	-	12908348,12909272,12911628,12913427,12915103,12915593,12920429,12922119,12924580,12935447,12941570,12994080	12908525,12909434,12911728,12913553,12915133,12915733,12920596,12922242,12924742,12936697,12941865,12994384	1.000000
right_atrium_auricular_region_female_adult_51_years	chr15	93863065	93863076	93863065	+	RAMPAGE_only	5	5	10	0.548753	2.725481	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93856559	93878356	LOC101927153|NR_120321.1	+	93856559,93865373,93869690,93878033	93856596,93865648,93869833,93878356	0.600000
right_atrium_auricular_region_female_adult_51_years	chr4	174154662	174154696	174154662	-	High_confidence	17	17	40	2.195011	4.731309	chr4	174154622	174154667	SINE|tRNA-Deu|AmnSINE2	+	chr4	174135054	174154637	AC012055.1|ENST00000511346.1	-	174135054,174154586	174136147,174154637	0.550000
right_atrium_auricular_region_female_adult_51_years	chr6	139289479	139289487	139289479	-	RAMPAGE_only	2	2	8	0.439002	2.807355	chr6	139289069	139289527	LTR|ERV1|LTR2	+	chr6	139240060	139292071	TXLNB|NM_153235.3	-	139240060,139244594,139247816,139255563,139260317,139262578,139270455,139276829,139288475,139291920	139243314,139244690,139247909,139255638,139260437,139262773,139270626,139276921,139288913,139292071	0.875000
right_atrium_auricular_region_female_adult_51_years	chrX	136167004	136167031	136167004	+	High_confidence	3	4	13	0.713379	2.918296	chrX	136166859	136167051	SINE|MIR|MIR	-	chrX	136167003	136208575	FHL1|ENST00000452016.5	+	136167003,136169906,136206406,136207015,136207791,136208454	136167077,136169980,136206588,136207190,136207961,136208575	0.846154
right_atrium_auricular_region_female_adult_51_years	chr3	33838216	33838240	33838219	+	RAMPAGE_only	3	3	12	0.658503	3.418296	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.750000
right_atrium_auricular_region_female_adult_51_years	chr16	81181330	81181350	81181349	-	High_confidence	13	13	35	1.920634	4.231009	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181362	PKD1L2|NM_001278423.1	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181362	0.942857
right_atrium_auricular_region_female_adult_51_years	chr1	153967486	153967512	153967486	+	High_confidence	7	9	23	1.262131	3.381620	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.826087
right_atrium_auricular_region_female_adult_51_years	chr21	28048446	28048447	28048446	+	High_confidence	63	63	67	3.676643	3.913577	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.940299
right_atrium_auricular_region_female_adult_51_years	chr9	106450727	106450740	106450739	+	High_confidence	4	4	11	0.603628	3.121928	chr9	106450433	106450967	LTR|ERVL-MaLR|MLT1G1	+	chr9	106450815	106604795	LINC01505|ENST00000425709.1	+	106450815,106558471,106588376,106603755	106450888,106558583,106588464,106604795	0.909091
right_atrium_auricular_region_female_adult_51_years	chr3	101466869	101466892	101466874	-	RAMPAGE_only	10	10	35	1.920634	4.436007	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	1.000000
right_atrium_auricular_region_female_adult_51_years	chr1	12084220	12084236	12084235	+	RAMPAGE_only	4	6	9	0.493877	2.500000	chr1	12084124	12084342	LINE|L2|L2	-	chr1	12063469	12143117	TNFRSF8|ENST00000514649.5	+	12063469,12097100,12104378,12109565,12110040,12111897,12115576,12123283,12123714,12125950,12126182,12135587,12138231,12142286	12063661,12097217,12104531,12109656,12110204,12112014,12115729,12123377,12123827,12126052,12126236,12135613,12138436,12143117	0.555556
right_atrium_auricular_region_female_adult_51_years	chr8	109379949	109380016	109380015	+	RAMPAGE_only	17	19	42	2.304761	4.537805	chr8	109378677	109380056	LTR|ERVL|ERVL-E-int	+	chr8	109362476	109531271	PKHD1L1|NM_177531.4	+	109362476,109364546,109381369,109382462,109384069,109385536,109388496,109389078,109390451,109394414,109396026,109398458,109400075,109401496,109404553,109404994,109406334,109408048,109409864,109412264,109413420,109419096,109420517,109425084,109427001,109429339,109429931,109433105,109435189,109436337,109438323,109438896,109440709,109441274,109442006,109442945,109443675,109444660,109448142,109449337,109450974,109452123,109452717,109454166,109454722,109456261,109459594,109461771,109464215,109466577,109475117,109476507,109477224,109479550,109479990,109481432,109482986,109485043,109486647,109489951,109490971,109491872,109493660,109496918,109497149,109498461,109498654,109504326,109507662,109508096,109510776,109515169,109518166,109522185,109522743,109523232,109526783,109530079	109362653,109364636,109381514,109382571,109384127,109385630,109388550,109389152,109390494,109394485,109396137,109398548,109400344,109401588,109404713,109405130,109406478,109408206,109409978,109412414,109413545,109419260,109420690,109425232,109427156,109429462,109430037,109433216,109435354,109436459,109438456,109439092,109440852,109441379,109442195,109443116,109443902,109445645,109448391,109449487,109451149,109452280,109452874,109454246,109454852,109456391,109459836,109461908,109465245,109466769,109475269,109476667,109477396,109479639,109480139,109481562,109483105,109485173,109486821,109490055,109491101,109491994,109493751,109497067,109497272,109498573,109498771,109504492,109507895,109508264,109510934,109515305,109518508,109522337,109522890,109523386,109527020,109531271	0.976190
right_atrium_auricular_region_female_adult_51_years	chr2	230713894	230713921	230713894	+	High_confidence	4	4	12	0.658503	3.277613	chr2	230713791	230714179	LINE|L2|L2c	-	chr2	230713547	230821075	CAB39|NM_001130850.1	+	230713547,230759958,230790871,230793212,230798728,230810262,230814048,230817753,230818515	230713802,230760115,230791036,230793331,230798897,230810322,230814114,230817897,230821075	0.916667
right_atrium_auricular_region_female_adult_51_years	chr15	99708882	99708883	99708882	+	RAMPAGE_only	9	9	14	0.768254	3.378783	chr15	99708810	99709549	LINE|L2|L2a	-	chr15	99706594	99715962	MEF2A|ENST00000561125.2	+	99706594,99710633,99712389,99715467	99706855,99710760,99712835,99715962	1.000000
right_atrium_auricular_region_female_adult_51_years	chr18	8376199	8376200	8376199	+	RAMPAGE_only	10	10	12	0.658503	3.418296	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8370932	8379313	PTPRM|ENST00000583153.2	+	8370932,8371759,8376045,8376461,8378264,8379166	8371006,8371810,8376200,8376597,8378414,8379313	0.583333
right_atrium_auricular_region_female_adult_51_years	chr5	150640038	150640047	150640041	+	High_confidence	4	4	9	0.493877	3.000000	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.777778
right_atrium_auricular_region_female_adult_51_years	chr4	69525984	69526017	69526016	-	High_confidence	20	21	77	4.225396	4.464827	chr4	69525819	69526138	SINE|Alu|AluY	+	chr4	69480164	69526014	UGT2B4|NM_001297616.1	-	69480164,69485207,69486608,69489438,69493692,69495140,69525686	69480910,69485427,69486696,69489570,69493841,69495410,69526014	0.883117
right_atrium_auricular_region_female_adult_51_years	chr15	57451528	57451576	57451552	+	RAMPAGE_only	6	6	38	2.085260	3.784095	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57377164	57546321	STRG.25742.2	+	57377164,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075	57377165,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546321	0.973684
right_atrium_auricular_region_female_adult_51_years	chr1	16048837	16048862	16048861	+	High_confidence	5	6	15	0.823129	3.807355	chr1	16048792	16048900	SINE|MIR|MIR	+	chr1	16048788	16057308	CLCNKB|ENST00000375667.7	+	16048788,16049617,16049814,16050515,16050874,16051477,16051709,16052197,16053638,16055434,16055677,16056421,16056868	16049245,16049702,16049916,16050600,16051048,16051547,16051820,16052411,16053772,16055523,16055758,16056508,16057308	0.800000
right_atrium_auricular_region_female_adult_51_years	chr9	2170427	2170460	2170459	+	RAMPAGE_only	3	3	8	0.439002	2.521641	chr9	2170425	2170469	LINE|CR1|L3	+	chr9	2160263	2192751	SMARCA2|ENST00000634781.1	+	2160263,2161685,2181570,2182140,2186095,2191265,2192703	2160619,2161903,2181676,2182242,2186228,2191408,2192751	0.750000
right_atrium_auricular_region_female_adult_51_years	chr8	94217321	94217323	94217321	-	High_confidence	4	10	12	0.658503	3.095795	chr8	94217291	94218145	LINE|RTE-X|L4_C_Mam	+	chr8	94127165	94217303	CDH17|NM_001144663.1	-	94127165,94130625,94130875,94145927,94148743,94151867,94159970,94162085,94165760,94170396,94170853,94173796,94174101,94176540,94177586,94189186,94194634,94217197	94128340,94130739,94130992,94146167,94148874,94152112,94160162,94162162,94165976,94170547,94170985,94173996,94174260,94176679,94177721,94189285,94194705,94217303	0.916667
right_atrium_auricular_region_female_adult_51_years	chr22	35615679	35615715	35615714	-	High_confidence	11	11	24	1.317006	4.168296	chr22	35615623	35615770	SINE|MIR|MIR3	-	chr22	35606763	35615713	MB|ENST00000401702.5	-	35606763,35610883,35615573	35607443,35611106,35615713	1.000000
right_atrium_auricular_region_female_adult_51_years	chrX	147937519	147937552	147937551	+	RAMPAGE_only	3	3	9	0.493877	2.725481	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.34368.6	+	147940580,147943130,147944904,147945533,147948682	147940662,147943326,147945051,147945616,147950315	1.000000
right_atrium_auricular_region_female_adult_51_years	chr12	110334016	110334131	110334130	+	RAMPAGE_only	43	44	249	13.663942	6.665119	chr12	110334168	110334585	LINE|L2|L2a	+	chr12	110292048	110346621	ATP2A2|ENST00000548169.2	+	110292048,110296598,110326389,110327552,110332596,110333180,110334011,110339280,110339502,110340658,110342227,110343231,110344885,110345248,110346000,110346200	110292124,110296737,110326475,110328017,110332685,110333283,110334143,110339403,110339721,110340994,110342448,110343434,110344971,110345382,110346118,110346621	1.000000
right_atrium_auricular_region_female_adult_51_years	chr19	55540256	55540401	55540309	-	RAMPAGE_only	15	20	73	4.005895	4.775423	chr19	55540273	55540577	SINE|Alu|AluSz	+	chr19	55539138	55546230	STRG.31373.2	-	55539138,55544099,55544798,55545248	55541526,55544302,55544949,55546230	1.000000
right_atrium_auricular_region_female_adult_51_years	chr13	112725749	112725799	112725749	+	RAMPAGE_only	2	2	12	0.658503	2.918296	chr13	112725697	112725770	LINE|CR1|L3b	+	chr13	112703286	112810699	ATP11A|ENST00000466946.5	+	112703286,112785134,112804956,112806212,112810618	112703342,112785257,112805046,112806293,112810699	0.916667
right_atrium_auricular_region_female_adult_51_years	chr14	50756782	50756791	50756790	-	RAMPAGE_only	4	4	8	0.439002	2.521641	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.875000
right_atrium_auricular_region_female_adult_51_years	chrX	155719045	155719106	155719045	-	RAMPAGE_only	14	14	48	2.634013	5.009703	chrX	155718901	155722240	LINE|L1|L1M1	+	chrX	155489010	155612961	TMLHE|NM_018196.3	-	155489010,155492356,155506897,155511672,155513985,155524455,155545095,155612791	155491666,155492495,155507134,155511792,155514265,155524632,155545277,155612961	0.916667
right_atrium_auricular_region_female_adult_51_years	chr7	123553338	123553339	123553338	-	RAMPAGE_only	9	11	11	0.603628	2.845351	chr7	123553169	123553535	LTR|ERVL-MaLR|THE1B	-	chr7	123541095	123557455	NDUFA5|ENST00000378795.8	-	123541095,123545610,123550469,123557403	123542220,123545676,123550586,123557455	1.000000
right_atrium_auricular_region_female_adult_51_years	chr9	121281815	121281851	121281850	+	RAMPAGE_only	7	7	19	1.042630	3.932138	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.789474
right_atrium_auricular_region_female_adult_51_years	chr22	24011756	24011757	24011756	+	High_confidence	6	6	6	0.329252	2.584963	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
right_atrium_auricular_region_female_adult_51_years	chr1	20639921	20639955	20639954	+	RAMPAGE_only	6	6	23	1.262131	3.653757	chr1	20640002	20640112	LINE|L2|L2b	+	chr1	20638128	20651316	PINK1|ENST00000492302.1	+	20638128,20644489,20645559,20648504,20650433	20639992,20644672,20645723,20649231,20651316	0.913043
right_atrium_auricular_region_female_adult_51_years	chr8	93795069	93795114	93795113	+	High_confidence	23	26	66	3.621768	4.749183	chr8	93794953	93795181	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	1.000000
right_atrium_auricular_region_female_adult_51_years	chr2	28165286	28165304	28165303	+	RAMPAGE_only	70	89	156	8.560542	4.061707	chr2	28165020	28165437	LINE|L2|L2b	-	chr2	27890792	28338901	BABAM2|ENST00000361704.6	+	27890792,27894532,27929831,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28310081,28338449	27890842,27894684,27929908,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28310153,28338901	0.993590
right_atrium_auricular_region_female_adult_51_years	chr20	64265449	64265480	64265449	+	High_confidence	6	8	30	1.646258	4.281728	chr20	64265443	64265603	SINE|MIR|MIR	-	chr20	64265511	64273545	PCMTD2|ENST00000609818.1	+	64265511,64267886,64273220	64265613,64268010,64273545	0.933333
right_atrium_auricular_region_female_adult_51_years	chr20	322447	322456	322455	-	RAMPAGE_only	3	3	7	0.384127	2.584963	chr20	322321	322511	LINE|L2|L2a	+	chr20	320312	325234	NRSN2-AS1|ENST00000414676.5	-	320312,322377,325141	320781,322565,325234	0.857143
right_atrium_auricular_region_female_adult_51_years	chr12	106833874	106833898	106833893	+	High_confidence	12	12	35	1.920634	4.182907	chr12	106833733	106834125	LTR|ERVL-MaLR|MSTB	+	chr12	106833926	106886250	STRG.23205.5	+	106833926,106842588,106843851,106851449,106860267,106870822,106885903	106834069,106842817,106843947,106851594,106860412,106870942,106886250	0.971429
right_atrium_auricular_region_female_adult_51_years	chr3	128624799	128624805	128624799	-	RAMPAGE_only	5	5	13	0.713379	3.546594	chr3	128624703	128624845	SINE|Alu|AluSc	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	1.000000
right_atrium_auricular_region_female_adult_51_years	chr7	33554872	33554904	33554872	+	RAMPAGE_only	6	6	37	2.030385	4.648956	chr7	33553757	33554962	LINE|L2|L2a	-	chr7	33344606	33605626	BBS9|ENST00000434373.3	+	33344606,33349067,33351218,33352858,33357854,33367766,33383665,33387991,33505462,33533953,33604864	33344634,33349170,33351323,33352873,33357995,33367862,33383838,33388144,33505645,33534176,33605626	0.972973
right_atrium_auricular_region_female_adult_51_years	chr8	143281669	143281687	143281686	-	High_confidence	18	20	62	3.402267	5.031841	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281250	MINCR|ENST00000519852.5	-	143280827,143281092	143280997,143281250	0.548387
right_atrium_auricular_region_female_adult_51_years	chr8	85378112	85378113	85378112	-	High_confidence	116	119	119	6.530157	4.431776	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.966387
right_atrium_auricular_region_female_adult_51_years	chr17	47056838	47056839	47056838	-	RAMPAGE_only	16	16	17	0.932880	3.625000	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.941176
right_atrium_auricular_region_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	145	148	148	8.121540	4.841959	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.939189
right_atrium_auricular_region_female_adult_51_years	chr19	41981957	41982064	41982039	-	RAMPAGE_only	10	10	104	5.707028	4.607006	chr19	41982026	41982072	LINE|CR1|L3	-	chr19	41966581	41993467	ATP1A3|NM_001256213.1	-	41966581,41967248,41967661,41968784,41969434,41970184,41970387,41975628,41976415,41977935,41978150,41978605,41981501,41981721,41981907,41984917,41985305,41985863,41986115,41987935,41988317,41988475,41993392	41966965,41967340,41967763,41968915,41969580,41970308,41970542,41975797,41976566,41978072,41978326,41978798,41981636,41981831,41982106,41985186,41985423,41985998,41986229,41988139,41988377,41988562,41993467	0.990385
right_atrium_auricular_region_female_adult_51_years	chr8	143039256	143039259	143039256	+	High_confidence	3	3	8	0.439002	2.521641	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.875000
right_atrium_auricular_region_female_adult_51_years	chr8	32927913	32927932	32927913	+	High_confidence	2	3	9	0.493877	2.500000	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927978	33046649	STRG.15940.1	+	32927978,32996200,33041634,33044366	32928093,32996316,33041771,33046649	0.777778
right_atrium_auricular_region_female_adult_51_years	chr7	43881925	43881956	43881925	-	RAMPAGE_only	3	4	12	0.658503	3.251629	chr7	43881785	43881943	LINE|L2|L2	+	chr7	43875912	43889634	URGCP|ENST00000336086.10	-	43875912,43881658,43881906,43887414	43879260,43881697,43881957,43889634	1.000000
right_atrium_auricular_region_female_adult_51_years	chr18	7946878	7946898	7946878	+	High_confidence	22	22	52	2.853514	4.828905	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.884615
right_atrium_auricular_region_female_adult_51_years	chr1	11984765	11984774	11984765	+	RAMPAGE_only	15	17	28	1.536508	4.253434	chr1	11984495	11985279	LTR|ERVL|MER21A	+	chr1	11981991	11992673	MFN2|ENST00000412236.1	+	11981991,11982522,11989164,11992554	11982114,11982590,11989343,11992673	0.642857
right_atrium_auricular_region_female_adult_51_years	chr2	219420996	219421031	219420996	+	RAMPAGE_only	4	4	16	0.878004	3.327820	chr2	219420988	219421091	SINE|MIR|MIRc	+	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	1.000000
right_atrium_auricular_region_female_adult_51_years	chr19	47780106	47780108	47780107	+	High_confidence	50	70	90	4.938774	5.680812	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.966667
right_atrium_auricular_region_female_adult_51_years	chr17	19386333	19386344	19386334	-	High_confidence	5	8	13	0.713379	2.855389	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.923077
right_atrium_auricular_region_female_adult_51_years	chr22	50785220	50785279	50785254	+	RAMPAGE_only	2	2	14	0.768254	3.182006	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	1.000000
right_atrium_auricular_region_female_adult_51_years	chr13	52236182	52236227	52236182	-	RAMPAGE_only	22	22	53	2.908389	4.777860	chr13	52235788	52236194	LINE|L1|L1PA16	+	chr13	52219351	52254020	TPTE2P2|ENST00000606973.5	-	52219351,52223238,52227004,52229325,52253744,52253936	52222633,52223331,52227096,52229431,52253833,52254020	0.566038
right_atrium_auricular_region_female_adult_51_years	chr4	122700441	122700442	122700441	+	High_confidence	188	191	241	13.224940	6.703819	chr4	122700197	122700669	LTR|ERVL|MER70A	+	chr4	122700450	122745866	STRG.8956.1	+	122700450,122704403,122741882	122700566,122705249,122745866	0.763485
right_atrium_auricular_region_female_adult_51_years	chr12	49013477	49013478	49013477	-	RAMPAGE_only	5	5	8	0.439002	2.521641	chr12	49013243	49013543	SINE|Alu|AluJb	-	chr12	49004571	49018415	PRKAG1|ENST00000552463.5	-	49004571,49004963,49005119,49005305,49005461,49005742,49013061,49016606,49018333	49004633,49005018,49005165,49005364,49005543,49005852,49013110,49016839,49018415	0.750000
right_atrium_auricular_region_female_adult_51_years	chr1	54200557	54200558	54200557	+	High_confidence	7	7	9	0.493877	3.169925	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.555556
right_atrium_auricular_region_female_adult_51_years	chr1	155058736	155058773	155058772	+	High_confidence	4	4	16	0.878004	4.000000	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.937500
right_atrium_auricular_region_female_adult_51_years	chr9	121281886	121281892	121281886	+	RAMPAGE_only	3	3	8	0.439002	2.521641	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.625000
right_atrium_auricular_region_female_adult_51_years	chr6	92181489	92181534	92181499	-	High_confidence	4	4	12	0.658503	3.418296	chr6	92181053	92181476	LTR|ERVL-MaLR|MLT1D	-	chr6	92181125	92181473	STRG.12915.1	-	92181125	92181473	0.666667
right_atrium_auricular_region_female_adult_51_years	chr2	61971459	61971465	61971464	+	RAMPAGE_only	6	6	11	0.603628	2.913977	chr2	61971115	61971625	LTR|ERV1|LTR10D	-	chr2	61905646	62136247	COMMD1|ENST00000311832.5	+	61905646,62000700,62135830	61905858,62000982,62136247	1.000000
right_atrium_auricular_region_female_adult_51_years	chr16	15006394	15006403	15006394	+	RAMPAGE_only	8	8	16	0.878004	3.405639	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.812500
right_atrium_auricular_region_female_adult_51_years	chr9	20658568	20658608	20658607	+	High_confidence	7	8	15	0.823129	2.835238	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.533333
right_atrium_auricular_region_female_adult_51_years	chr15	73282753	73282849	73282848	+	RAMPAGE_only	8	8	47	2.579138	4.166113	chr15	73282711	73282873	LINE|L2|L2b	-	chr15	73135984	73305198	NEO1|ENST00000560328.1	+	73135984,73176402,73178306,73236286,73244343,73249059,73249582,73253399,73254681,73258765,73260270,73266315,73270057,73270315,73272454,73273810,73278130,73282963,73288312,73289145,73293389,73298347,73301320,73302612	73136027,73176557,73178427,73236506,73244498,73249208,73249721,73253449,73254829,73258876,73260465,73266411,73270233,73270454,73272562,73274005,73278199,73283111,73288551,73289238,73293548,73298611,73301457,73305198	0.957447
right_atrium_auricular_region_female_adult_51_years	chr11	43741937	43741941	43741937	+	RAMPAGE_only	3	3	7	0.384127	2.521641	chr11	43741722	43742032	SINE|Alu|AluY	-	chr11	43680592	43856619	HSD17B12|NM_016142.2	+	43680592,43750910,43754045,43798319,43815436,43816346,43830975,43838316,43839998,43854714,43855143	43680987,43750957,43754121,43798427,43815501,43816391,43831010,43838398,43840064,43854864,43856619	1.000000
right_atrium_auricular_region_female_adult_51_years	chr2	190760500	190760501	190760500	-	High_confidence	876	877	919	50.430373	6.814460	chr2	190760093	190761528	LTR|ERV1|LTR12C	-	chr2	190753812	190760496	STRG.4942.2	-	190753812,190760091	190755127,190760496	0.895539
right_atrium_auricular_region_female_adult_51_years	chr6	122444139	122444648	122444139	-	RAMPAGE_only	17	18	298	16.352830	5.734406	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	1.000000
right_atrium_auricular_region_female_adult_51_years	chr12	46266488	46266516	46266488	-	High_confidence	8	8	25	1.371882	3.733661	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	1.000000
right_atrium_auricular_region_female_adult_51_years	chr18	35136394	35136407	35136394	+	RAMPAGE_only	4	4	12	0.658503	2.913977	chr18	35136349	35136693	LINE|L2|L2c	-	chr18	35041649	35143470	MAPRE2|ENST00000589699.1	+	35041649,35070194,35097445,35101945,35126947,35132031,35140294	35041766,35070322,35097591,35102159,35127087,35132190,35143470	0.916667
right_atrium_auricular_region_female_adult_51_years	chr4	158173013	158173025	158173024	-	High_confidence	102	105	164	8.999544	6.053513	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.932927
right_atrium_auricular_region_female_adult_51_years	chr14	95516120	95516121	95516120	+	High_confidence	9	14	14	0.768254	3.378783	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	1.000000
right_atrium_auricular_region_female_adult_51_years	chr17	31128483	31128484	31128483	+	High_confidence	16	16	20	1.097505	3.681881	chr17	31128254	31128640	LINE|L1|L1PA13	-	chr17	31128457	31169964	NF1|ENST00000489712.6	+	31128457,31155982,31159009,31163185,31169890	31128507,31156126,31159093,31163376,31169964	0.900000
right_atrium_auricular_region_female_adult_51_years	chr2	217909731	217909743	217909736	-	RAMPAGE_only	11	12	26	1.426757	3.843856	chr2	217909603	217909688	DNA|hAT-Charlie|MER5A	-	chr2	217848883	217905461	TNS1|ENST00000413554.5	-	217848883,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217905295	217849087,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217905461	0.961538
right_atrium_auricular_region_female_adult_51_years	chr16	46706118	46706140	46706139	-	RAMPAGE_only	2	3	6	0.329252	2.584963	chr16	46706075	46706290	DNA|TcMar-Tigger|Tigger2a	-	chr16	46702281	46748309	MYLK3|NM_182493.2	-	46702281,46709538,46710636,46712647,46721122,46727235,46729023,46729593,46730592,46732207,46737710,46740056,46747716	46707763,46709671,46710789,46712776,46721193,46727377,46729133,46729687,46730698,46732668,46738143,46740147,46748309	1.000000
right_atrium_auricular_region_female_adult_51_years	chr1	16020468	16020479	16020470	-	High_confidence	10	16	28	1.536508	4.209867	chr1	16020340	16020460	SINE|MIR|MIR3	-	chr1	16014027	16019594	HSPB7|ENST00000375718.4	-	16014027,16017073,16017764,16019133	16015759,16017207,16017852,16019594	0.714286
right_atrium_auricular_region_female_adult_51_years	chr2	219631638	219631713	219631658	+	High_confidence	12	12	67	3.676643	5.441751	chr2	219631665	219631820	SINE|MIR|MIRc	+	chr2	219632058	219637795	SLC4A3|ENST00000416910.1	+	219632058,219632261,219632873,219633273,219633865,219634419,219635270,219635672,219636301,219636679,219637580	219632116,219632442,219633009,219633457,219633979,219634604,219635496,219635891,219636450,219636874,219637795	0.880597
right_atrium_auricular_region_female_adult_51_years	chr6	34762176	34762177	34762176	+	RAMPAGE_only	19	21	23	1.262131	3.744239	chr6	34762020	34762316	SINE|Alu|AluJb	+	chr6	34757911	34773532	SNRPC|ENST00000474635.1	+	34757911,34762594,34767907,34770290,34772930,34773445	34757954,34762703,34767997,34770395,34773007,34773532	0.739130
right_atrium_auricular_region_female_adult_51_years	chr16	20674497	20674498	20674497	+	High_confidence	243	243	266	14.596822	4.627605	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.951128
right_atrium_auricular_region_female_adult_51_years	chr1	174204831	174204832	174204831	+	RAMPAGE_only	5	5	7	0.384127	2.807355	chr1	174204635	174205029	LTR|ERVL-MaLR|MSTA	+	chr1	174220711	174231245	RABGAP1L|ENST00000487987.1	+	174220711,174231144	174221164,174231245	0.857143
right_atrium_auricular_region_female_adult_51_years	chr7	158863386	158863410	158863400	+	RAMPAGE_only	14	17	61	3.347391	5.267211	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.819672
right_atrium_auricular_region_female_adult_51_years	chr17	29667618	29667658	29667657	-	RAMPAGE_only	8	8	24	1.317006	4.053509	chr17	29667384	29667678	DNA|hAT-Charlie|MER1B	+	chr17	29630799	29761417	SSH2|ENST00000649863.1	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677738,29684684,29695523,29703062,29761417	0.666667
right_atrium_auricular_region_female_adult_51_years	chr5	114433510	114433511	114433510	+	High_confidence	170	172	180	9.877549	5.384942	chr5	114432499	114433929	LTR|ERV1|LTR12C	+	chr5	114433529	114496500	KCNN2|NR_103458.1	+	114433529,114463048,114473053,114486697,114487049,114493402,114495894	114433929,114463190,114473164,114486803,114487177,114493472,114496500	0.950000
right_atrium_auricular_region_female_adult_51_years	chr12	122064332	122064351	122064350	+	RAMPAGE_only	4	4	9	0.493877	2.725481	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.666667
right_atrium_auricular_region_female_adult_51_years	chr6	28354137	28354206	28354205	-	High_confidence	9	10	25	1.371882	3.969002	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329449	28354204	ZSCAN31|ENST00000434036.5	-	28329449,28336789,28353861,28354130	28329714,28336943,28353952,28354204	0.680000
right_atrium_auricular_region_female_adult_51_years	chr16	11587468	11587487	11587486	-	High_confidence	3	3	8	0.439002	2.521641	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.750000
right_atrium_auricular_region_female_adult_51_years	chr16	761046	761134	761114	+	High_confidence	58	58	306	16.791833	5.698498	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.980392
right_atrium_auricular_region_female_adult_51_years	chr18	9849513	9849551	9849550	+	RAMPAGE_only	5	5	15	0.823129	2.656565	chr18	9849471	9850083	LINE|L2|L2a	-	chr18	9856043	9859520	RAB31|ENST00000577284.1	+	9856043,9859227	9856354,9859520	0.933333
right_atrium_auricular_region_female_adult_51_years	chr2	96638013	96638059	96638016	-	High_confidence	6	6	39	2.140136	4.521358	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.717949
right_atrium_auricular_region_female_adult_51_years	chr2	10844751	10844752	10844751	+	High_confidence	7	7	7	0.384127	2.521641	chr2	10844730	10845031	SINE|Alu|AluSx	-	chr2	10844239	10885118	STRG.3183.4	+	10844239,10884833	10844505,10885118	0.857143
right_atrium_auricular_region_female_adult_51_years	chr3	12662744	12662796	12662795	-	RAMPAGE_only	16	16	39	2.140136	4.520000	chr3	12662589	12662820	LINE|L2|L2c	+	chr3	12584332	12664125	RAF1|ENST00000423275.5	-	12584332,12584846,12585121,12585680,12587590,12590797,12591707,12599690,12600151,12600387,12604135,12606200,12608765,12609232,12618514,12663812	12584657,12584981,12585253,12585799,12587637,12590974,12591792,12599808,12600279,12600415,12604289,12606299,12608923,12609335,12618747,12664125	0.564103
right_atrium_auricular_region_female_adult_51_years	chrX	16712869	16712890	16712889	-	High_confidence	5	5	15	0.823129	3.378783	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.733333
right_atrium_auricular_region_female_adult_51_years	chr10	35449689	35449715	35449689	+	RAMPAGE_only	2	2	11	0.603628	2.721928	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.727273
right_atrium_auricular_region_female_adult_51_years	chrX	38612520	38612626	38612597	+	RAMPAGE_only	17	20	106	5.816779	5.423823	chrX	38612500	38614189	LINE|L1|HAL1	-	chrX	38570682	38675816	TSPAN7|ENST00000488893.5	+	38570682,38666120,38671375,38674220,38675704	38570946,38666309,38671450,38674316,38675816	0.792453
right_atrium_auricular_region_female_adult_51_years	chr13	30863476	30863494	30863493	+	RAMPAGE_only	3	4	7	0.384127	2.521641	chr13	30863143	30863642	LTR|ERVL|MER74A	+	chr13	30906174	30925572	MEDAG|NM_032849.3	+	30906174,30917402,30921013,30921560,30924310	30906793,30917512,30921126,30921846,30925572	0.714286
right_atrium_auricular_region_female_adult_51_years	chr3	132285409	132285429	132285409	-	High_confidence	5	6	10	0.548753	2.921928	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.500000
right_atrium_auricular_region_female_adult_51_years	chr3	12514052	12514060	12514059	+	RAMPAGE_only	4	4	8	0.439002	3.000000	chr3	12513979	12514484	LINE|L2|L2b	-	chr3	12503445	12539504	STRG.5640.6	+	12503445,12505153,12516610,12519058,12528887,12529761,12531569,12532661,12539160	12503784,12505231,12516661,12519197,12528924,12529873,12531659,12532773,12539504	1.000000
right_atrium_auricular_region_female_adult_51_years	chr20	38985938	38985984	38985964	+	RAMPAGE_only	9	11	37	2.030385	4.391490	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.972973
right_atrium_auricular_region_female_adult_51_years	chr16	84139280	84139303	84139283	-	RAMPAGE_only	4	4	11	0.603628	3.095795	chr16	84139153	84139637	LTR|ERVL-MaLR|MLT1D	+	chr16	84124122	84145169	HSDL1|ENST00000434463.7	-	84124122,84129547,84129985,84130336,84131101,84135543,84145079	84124728,84129775,84130171,84130431,84131327,84135605,84145169	0.545455
right_atrium_auricular_region_female_adult_51_years	chr5	148319974	148319975	148319974	+	RAMPAGE_only	8	11	12	0.658503	3.277613	chr5	148319975	148321427	LINE|L1|L1P1	+	chr5	148321202	148339722	SPINK9|ENST00000511717.6	+	148321202,148323678,148336421,148338477,148339666	148321400,148323868,148336453,148338605,148339722	0.500000
right_atrium_auricular_region_female_adult_51_years	chr4	64279028	64279395	64279394	-	RAMPAGE_only	64	67	792	43.461214	6.920293	chr4	64279257	64279568	SINE|Alu|AluJr	-	chr4	64277701	64409398	STRG.8359.1	-	64277701,64281040,64281473,64289709,64299973,64305165,64309825,64314647,64322688,64328511,64375171,64409117	64280199,64281086,64281559,64289767,64300017,64305238,64309931,64314763,64322792,64328556,64375223,64409398	0.997475
right_atrium_auricular_region_female_adult_51_years	chr3	132285557	132285558	132285557	-	High_confidence	7	7	9	0.493877	2.947703	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.555556
right_atrium_auricular_region_female_adult_51_years	chr9	113484732	113484733	113484732	+	RAMPAGE_only	6	6	8	0.439002	2.521641	chr9	113484629	113484751	SINE|MIR|MIR	+	chr9	113501370	113507509	RGS3|ENST00000466314.5	+	113501370,113505017,113505441,113506387,113507286	113501434,113505092,113505523,113506493,113507509	0.500000
right_atrium_auricular_region_female_adult_51_years	chr11	17282813	17282822	17282821	+	RAMPAGE_only	3	3	8	0.439002	2.750000	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.625000
right_atrium_auricular_region_female_adult_51_years	chr2	241235121	241235133	241235132	-	RAMPAGE_only	3	3	7	0.384127	2.521641	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241230774	241236664	HDLBP|ENST00000470482.5	-	241230774,241233819,241235120,241235489,241236614	241230944,241233963,241235275,241235594,241236664	0.571429
right_atrium_auricular_region_female_adult_51_years	chr7	134535465	134535466	134535465	+	RAMPAGE_only	4	5	6	0.329252	2.584963	chr7	134535438	134535480	DNA|hAT-Charlie|MER5B	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	1.000000
right_atrium_auricular_region_female_adult_51_years	chr6	12103377	12103382	12103381	+	RAMPAGE_only	4	6	12	0.658503	3.251629	chr6	12103250	12103431	SINE|MIR|MIRb	-	chr6	12012490	12164999	HIVEP1|NM_002114.3	+	12012490,12015525,12089183,12119889,12129758,12130766,12135790,12161438,12163282	12012566,12015668,12089237,12125870,12129892,12130942,12135892,12161929,12164999	0.833333
right_atrium_auricular_region_female_adult_51_years	chr1	77532106	77532107	77532106	+	High_confidence	7	7	9	0.493877	2.500000	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.888889
right_atrium_auricular_region_female_adult_51_years	chr13	51382047	51382081	51382047	-	RAMPAGE_only	5	5	11	0.603628	3.095795	chr13	51381694	51382000	SINE|Alu|AluSq4	-	chr13	51365502	51384691	INTS6|ENST00000483441.5	-	51365502,51367804,51368938,51374207,51374653,51376047,51378238,51379461,51382028,51383328,51383588	51365845,51367898,51369310,51374439,51374796,51376174,51378454,51379572,51382123,51383461,51384691	1.000000
right_atrium_auricular_region_female_adult_51_years	chr2	37020016	37020048	37020017	-	RAMPAGE_only	34	40	64	3.512017	5.135700	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	37008167	37013995	HEATR5B|ENST00000471051.1	-	37008167,37013840	37008848,37013995	0.593750
right_atrium_auricular_region_female_adult_51_years	chr8	57746128	57746129	57746128	+	High_confidence	13	14	16	0.878004	2.866248	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.937500
right_atrium_auricular_region_female_adult_51_years	chr15	43331910	43331920	43331910	+	High_confidence	4	4	9	0.493877	2.947703	chr15	43331694	43331973	LINE|L2|L2-3_Crp	-	chr15	43331974	43345877	ADAL|ENST00000563551.1	+	43331974,43333310,43335695,43340264,43342993,43345853	43332000,43333434,43335826,43340352,43343075,43345877	0.888889
right_atrium_auricular_region_female_adult_51_years	chr19	34860632	34860644	34860632	-	High_confidence	7	14	27	1.481632	3.559080	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.740741
right_atrium_auricular_region_female_adult_51_years	chr1	31376356	31376357	31376356	-	High_confidence	106	115	115	6.310656	4.626671	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.904348
right_atrium_auricular_region_female_adult_51_years	chr16	8842153	8842193	8842178	+	High_confidence	6	6	17	0.932880	3.499228	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	1.000000
right_atrium_auricular_region_female_adult_51_years	chr20	50131135	50131162	50131139	-	High_confidence	110	113	338	18.547841	6.585054	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.988166
right_atrium_auricular_region_female_adult_51_years	chr20	37711698	37711743	37711731	+	RAMPAGE_only	4	4	23	1.262131	3.551191	chr20	37711408	37712034	LINE|L2|L2a	-	chr20	37694061	37872117	CTNNBL1|ENST00000628103.2	+	37694061,37727301,37732878,37737377,37746467,37757558,37765196,37767952,37777344,37777653,37779186,37802866,37840101,37842338,37859898,37860271,37871924	37694152,37727402,37733067,37737484,37746607,37757656,37765290,37768044,37777417,37777712,37779335,37803048,37840199,37842419,37860036,37860344,37872117	1.000000
right_atrium_auricular_region_female_adult_51_years	chr12	104858837	104858838	104858837	+	High_confidence	133	139	181	9.932424	5.762294	chr12	104858784	104858889	DNA|TcMar-Tigger|UCON55	+	chr12	104858840	104870783	STRG.23184.1	+	104858840,104870161	104858907,104870783	0.955801
right_atrium_auricular_region_female_adult_51_years	chr8	93795755	93795761	93795760	+	High_confidence	10	12	16	0.878004	3.077820	chr8	93795732	93795826	SINE|Alu|FLAM_A	+	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	1.000000
right_atrium_auricular_region_female_adult_51_years	chr16	15798662	15798665	15798662	-	RAMPAGE_only	4	5	9	0.493877	3.000000	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.777778
right_atrium_auricular_region_female_adult_51_years	chr14	81170372	81170420	81170419	-	High_confidence	10	10	40	2.195011	4.333622	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.925000
right_atrium_auricular_region_female_adult_51_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	17	17	42	2.304761	4.553056	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.928571
right_atrium_auricular_region_female_adult_51_years	chr8	18083282	18083309	18083282	-	High_confidence	2	2	8	0.439002	2.807355	chr8	18083239	18083389	SINE|MIR|MIR3	+	chr8	18066901	18083184	ASAH1|ENST00000636269.1	-	18066901,18069791,18071299,18075540,18083121	18067298,18069878,18071390,18075587,18083184	0.625000
right_atrium_auricular_region_female_adult_51_years	chr1	19344359	19344410	19344388	-	RAMPAGE_only	4	4	20	1.097505	3.932138	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.850000
right_atrium_auricular_region_female_adult_51_years	chr11	14759567	14759573	14759567	+	RAMPAGE_only	5	5	10	0.548753	2.947703	chr11	14759548	14759845	SINE|Alu|AluSc	-	chr11	14643830	14869894	PDE3B|ENST00000455098.2	+	14643830,14771936,14786436,14789105,14803943,14818182,14819135,14830697,14831639,14832721,14834981,14843826,14859042,14861204,14867505,14869460	14645053,14771987,14786532,14789242,14804050,14818393,14819209,14830846,14831777,14832833,14835095,14844026,14859246,14861366,14867758,14869894	0.500000
right_atrium_auricular_region_female_adult_51_years	chr6	82169336	82169357	82169336	-	RAMPAGE_only	4	4	8	0.439002	3.000000	chr6	82169335	82169431	SINE|Alu|AluSz6	+	chr6	81845184	81933480	LINC02542|ENST00000418567.1	-	81845184,81928856,81933428	81845909,81928901,81933480	0.625000
right_atrium_auricular_region_female_adult_51_years	chr4	47831055	47831114	47831055	+	High_confidence	18	21	41	2.249886	5.028992	chr4	47831064	47831545	LINE|RTE-BovB|MamRTE1	+	chr4	47830962	47882344	STRG.8137.4	+	47830962,47875176,47882241	47831508,47875331,47882344	0.829268
right_atrium_auricular_region_female_adult_51_years	chr8	144063388	144063458	144063432	-	High_confidence	15	17	72	3.951019	5.676734	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144058886	144063965	OPLAH|ENST00000567871.2	-	144058886,144058979,144059598,144059861,144063699	144058896,144059079,144059790,144060085,144063965	0.527778
right_atrium_auricular_region_female_adult_51_years	chr18	35136534	35136541	35136534	+	RAMPAGE_only	88	93	133	7.298411	5.272714	chr18	35136349	35136693	LINE|L2|L2c	-	chr18	35041649	35143470	MAPRE2|ENST00000589699.1	+	35041649,35070194,35097445,35101945,35126947,35132031,35140294	35041766,35070322,35097591,35102159,35127087,35132190,35143470	0.849624
right_atrium_auricular_region_female_adult_51_years	chr10	95312783	95313132	95313122	-	RAMPAGE_only	18	18	403	22.114734	5.429985	chr10	95313103	95313210	DNA|hAT-Tip100|UCON132b	+	chr10	95311772	95339327	SORBS1|ENST00000649911.1	-	95311772,95318319,95321962,95339132	95315126,95318432,95322153,95339327	0.997519
right_atrium_auricular_region_female_adult_51_years	chr11	123060174	123060257	123060188	-	High_confidence	36	41	383	21.017228	5.397542	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.660574
right_atrium_auricular_region_female_adult_51_years	chr9	116605987	116605988	116605987	-	RAMPAGE_only	5	5	7	0.384127	2.521641	chr9	116605863	116606013	SINE|MIR|MIR3	+	chr9	116425224	116687215	ASTN2|NM_198186.3	-	116425224,116440608,116442452,116487358,116618323,116620309,116651527,116686696	116426088,116440792,116442553,116487500,116618472,116620443,116651793,116687215	0.857143
right_atrium_auricular_region_female_adult_51_years	chr16	72014385	72014451	72014418	+	High_confidence	234	236	722	39.619945	7.056383	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.698061
right_atrium_auricular_region_female_adult_51_years	chr15	42415244	42415499	42415440	-	RAMPAGE_only	41	46	374	20.523351	6.016028	chr15	42415122	42415421	SINE|Alu|AluSq2	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	0.991979
right_atrium_auricular_region_female_adult_51_years	chr19	11507494	11507542	11507494	-	High_confidence	2	2	14	0.768254	2.873141	chr19	11507282	11507445	SINE|Alu|FRAM	-	chr19	11506074	11507709	ECSIT|ENST00000585898.1	-	11506074,11507456	11506428,11507709	0.714286
right_atrium_auricular_region_female_adult_51_years	chr9	104763732	104763756	104763732	+	High_confidence	5	5	15	0.823129	3.664498	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	0.933333
right_atrium_auricular_region_female_adult_51_years	chr8	38825319	38825361	38825360	+	RAMPAGE_only	6	6	21	1.152381	3.681881	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.761905
right_atrium_auricular_region_female_adult_51_years	chr13	52187368	52187426	52187425	-	RAMPAGE_only	11	14	41	2.249886	4.412815	chr13	52187154	52187503	LINE|L1|L1ME2	+	chr13	52175638	52194378	MRPS31P5|ENST00000423686.1	-	52175638,52180581,52184272,52186682,52189638,52194222	52175776,52180654,52184408,52186823,52189914,52194378	0.780488
right_atrium_auricular_region_female_adult_51_years	chr11	47351783	47351818	47351783	-	High_confidence	25	26	83	4.554647	5.727155	chr11	47351577	47351776	SINE|MIR|MIRb	-	chr11	47331396	47352702	MYBPC3|ENST00000545968.5	-	47331396,47331844,47332071,47332565,47332813,47333193,47333556,47333921,47335041,47335876,47337390,47337689,47338519,47339323,47339650,47341002,47341137,47341990,47342577,47342829,47343020,47343259,47343491,47346206,47346626,47347026,47347425,47347650,47347856,47348423,47349773,47350013,47350501,47351238,47352622	47331716,47331881,47332258,47332702,47332973,47333333,47333752,47334010,47335209,47336011,47337579,47337794,47338679,47339404,47339790,47341032,47341244,47342156,47342744,47342935,47343145,47343262,47343624,47346370,47346644,47347029,47347479,47347680,47347905,47348541,47349922,47350112,47350615,47351505,47352702	0.795181
right_atrium_auricular_region_female_adult_51_years	chr10	45000503	45000524	45000523	+	High_confidence	2	2	7	0.384127	2.807355	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
right_atrium_auricular_region_female_adult_51_years	chr2	10844223	10844421	10844373	+	High_confidence	145	146	726	39.839446	5.934842	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844239	10885118	STRG.3183.1	+	10844239,10878270,10884833	10844505,10880973,10885118	0.779614
right_atrium_auricular_region_female_adult_51_years	chr7	6590271	6590286	6590271	+	High_confidence	4	4	9	0.493877	2.503258	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	1.000000
right_atrium_auricular_region_female_adult_51_years	chr9	39810023	39810094	39810033	-	High_confidence	159	159	392	21.511106	6.153141	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803496	39810013	STRG.17545.2	-	39803496,39809485,39809730	39803859,39809615,39810013	0.974490
right_atrium_auricular_region_female_adult_51_years	chr1	155478043	155478044	155478043	-	RAMPAGE_only	5	5	8	0.439002	2.807355	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.875000
right_atrium_auricular_region_female_adult_51_years	chr19	55280217	55280251	55280217	-	High_confidence	5	5	16	0.878004	3.056565	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.937500
right_atrium_auricular_region_female_adult_51_years	chr2	182928789	182928814	182928789	-	RAMPAGE_only	3	4	12	0.658503	2.855389	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.500000
right_atrium_auricular_region_female_adult_51_years	chrX	24662729	24662760	24662752	+	High_confidence	150	151	442	24.254869	4.405813	chrX	24662451	24662978	LTR|ERVL|LTR75	+	chrX	24662690	24668441	STRG.33481.1	+	24662690,24668137	24662885,24668441	0.993213
right_atrium_auricular_region_female_adult_51_years	chr16	2757800	2757814	2757810	+	High_confidence	3	3	10	0.548753	2.725481	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.700000
right_atrium_auricular_region_female_adult_51_years	chr20	44532569	44532570	44532569	+	High_confidence	27	28	29	1.591383	4.060262	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.896552
right_atrium_auricular_region_female_adult_51_years	chr12	55626267	55626302	55626267	-	RAMPAGE_only	247	248	447	24.529246	5.366661	chr12	55626113	55626696	LTR|ERVL-MaLR|MLT1F2	-	chr12	55434754	55585471	AC122685.1|ENST00000556750.5	-	55434754,55476548,55493090,55585414	55435131,55476601,55493158,55585471	0.966443
right_atrium_auricular_region_female_adult_51_years	chr8	18083388	18083430	18083388	-	High_confidence	9	9	77	4.225396	5.333354	chr8	18083239	18083389	SINE|MIR|MIR3	+	chr8	18056458	18083408	ASAH1|ENST00000636691.1	-	18056458,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18067219,18069791,18071299,18075540,18083121	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18064531,18067298,18069878,18071390,18075587,18083408	0.857143
right_atrium_auricular_region_female_adult_51_years	chr2	156787700	156787776	156787743	+	RAMPAGE_only	10	11	49	2.688888	4.619005	chr2	156787591	156787841	DNA|hAT|MamRep38	-	chr2	156864127	156865011	STRG.4586.1	+	156864127	156865011	0.591837
right_atrium_auricular_region_female_adult_51_years	chr7	112995595	112995658	112995629	-	High_confidence	149	149	533	29.248519	7.064120	chr7	112995411	112995725	LINE|L2|L2	+	chr7	112954645	112995634	HRAT17|ENST00000451962.5	-	112954645,112956521,112973604,112980045,112986535,112995567	112954768,112956702,112973672,112980164,112986664,112995634	0.786116
right_atrium_auricular_region_female_adult_51_years	chr11	11963631	11964291	11963658	-	RAMPAGE_only	435	567	5278	289.631674	7.502999	chr11	11963645	11963694	DNA|hAT-Ac|OldhAT1	-	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.971391
right_atrium_auricular_region_female_adult_51_years	chr9	128921939	128921961	128921960	+	High_confidence	11	11	34	1.865759	4.657882	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.852941
right_atrium_auricular_region_female_adult_51_years	chr12	104864942	104864979	104864942	+	RAMPAGE_only	8	8	18	0.987755	4.087463	chr12	104863461	104865746	LINE|L1|HAL1	-	chr12	104858840	104870783	STRG.23184.1	+	104858840,104870161	104858907,104870783	0.833333
right_atrium_auricular_region_female_adult_51_years	chr12	6016516	6016562	6016516	-	RAMPAGE_only	2	2	11	0.603628	3.121928	chr12	6016356	6016502	SINE|MIR|MIR3	-	chr12	5948873	6124675	VWF|ENST00000261405.9	-	5948873,5949785,5951843,5952390,5953495,5967485,5968126,5969210,5971598,5976110,5981785,5983149,5985044,5985562,5991818,5993861,5994414,5996001,6011616,6012086,6013480,6016088,6016515,6016753,6018364,6021899,6022739,6023630,6025579,6025905,6029341,6031443,6034687,6036387,6044290,6046722,6052542,6056856,6057848,6062953,6064245,6065136,6071296,6072330,6073618,6075334,6095459,6110373,6110865,6121173,6123141,6124420	5949203,5949883,5951883,5952519,5953594,5967602,5968167,5969391,5971709,5976260,5981991,5983254,5985119,5985665,5992018,5994203,5994607,5996222,6011794,6012130,6013645,6016232,6016656,6016870,6019743,6022035,6022898,6023787,6025693,6026046,6029488,6031578,6034826,6036491,6044451,6046817,6052783,6057072,6058044,6063054,6064384,6065273,6071343,6072442,6073741,6075551,6095584,6110582,6110968,6121338,6123196,6124675	0.909091
right_atrium_auricular_region_female_adult_51_years	chr15	43133126	43133135	43133134	+	High_confidence	5	5	12	0.658503	2.918296	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133161	43146521	TMEM62|ENST00000565291.5	+	43133161,43134256,43135511,43138573,43146492	43133402,43134368,43135649,43138619,43146521	1.000000
right_atrium_auricular_region_female_adult_51_years	chr12	120495908	120495946	120495945	-	High_confidence	11	14	58	3.182766	5.337019	chr12	120495927	120495980	LTR|ERV1|LTR71B	+	chr12	120490337	120495946	NRAV|NR_038854.1	-	120490337,120495822	120492110,120495946	0.982759
right_atrium_auricular_region_female_adult_51_years	chr5	180830993	180831010	180831009	+	High_confidence	11	11	34	1.865759	4.574401	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.911765
right_atrium_auricular_region_female_adult_51_years	chr22	35623191	35623192	35623191	-	High_confidence	6	6	6	0.329252	2.584963	chr22	35623096	35623262	SINE|MIR|MIR	-	chr22	35606763	35623354	MB|ENST00000359787.5	-	35606763,35610883,35617162,35623190	35607443,35611106,35617265,35623354	1.000000
right_atrium_auricular_region_female_adult_51_years	chr3	48979501	48979550	48979523	+	RAMPAGE_only	12	12	32	1.756009	4.390320	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.968750
right_atrium_auricular_region_female_adult_51_years	chr18	31227596	31227643	31227615	-	High_confidence	178	179	1182	64.862569	7.219257	chr18	31226911	31227662	LINE|L2|L2	+	chr18	31129235	31227612	STRG.29493.3	-	31129235,31131593,31132567,31133890,31134571,31139747,31140041,31141998,31143656,31145610,31148497,31154773,31156042,31157370,31159444,31162531,31227437	31130711,31131842,31132689,31134130,31134784,31139890,31140301,31142184,31143791,31145777,31148642,31154929,31156162,31157573,31159529,31162848,31227612	0.853638
right_atrium_auricular_region_female_adult_51_years	chr3	131804585	131804630	131804603	-	High_confidence	35	36	120	6.585032	5.855521	chr3	131804531	131804997	LTR|ERVL-MaLR|MLT1H	+	chr3	131534875	131804691	STRG.6858.3	-	131534875,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131804557	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131804691	0.641667
right_atrium_auricular_region_female_adult_51_years	chr10	67076927	67076933	67076932	-	RAMPAGE_only	12	12	26	1.426757	4.243856	chr10	67076859	67077820	LINE|L2|L2a	+	chr10	66766154	67180443	CTNNA3|ENST00000494580.1	-	66766154,66775443,67180316	66766416,66775524,67180443	0.615385
right_atrium_auricular_region_female_adult_51_years	chr5	127858364	127858429	127858428	-	High_confidence	38	45	98	5.377776	3.498230	chr5	127858260	127858629	LINE|L2|L2c	+	chr5	127838485	127857804	AC068658.1|ENST00000507509.1	-	127838485,127857613	127838682,127857804	0.928571
right_atrium_auricular_region_female_adult_51_years	chr3	183630129	183630133	183630132	+	RAMPAGE_only	4	4	11	0.603628	3.321928	chr3	183630102	183630275	LTR|ERV1?|LTR103b_Mam	+	chr3	183635567	183679478	KLHL24|ENST00000242810.10	+	183635567,183643479,183650295,183663457,183664920,183671033,183672295,183679085	183635793,183643542,183651276,183663642,183665039,183671222,183672484,183679478	0.909091
right_atrium_auricular_region_female_adult_51_years	chr5	148452788	148452789	148452788	+	High_confidence	4	4	7	0.384127	2.584963	chr5	148452775	148452912	LINE|L2|L2a	-	chr5	148452784	148559987	STRG.11454.1	+	148452784,148468919,148550084,148559574	148453172,148469017,148550351,148559987	0.857143
right_atrium_auricular_region_female_adult_51_years	chr1	21833817	21833855	21833827	-	High_confidence	6	6	25	1.371882	4.083856	chr1	21833729	21833783	LINE|L2|L2c	-	chr1	21829992	21833577	HSPG2|ENST00000635682.1	-	21829992,21830981,21831214,21831462,21831651,21832494,21832874,21833267,21833466	21830091,21831090,21831324,21831562,21831796,21832606,21832892,21833384,21833577	1.000000
right_atrium_auricular_region_female_adult_51_years	chr15	80059918	80059933	80059918	+	High_confidence	199	219	424	23.267114	5.133675	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059916	80121820	STRG.26199.13	+	80059916,80098415,80120327,80121711	80059963,80098578,80120498,80121820	0.787736
right_atrium_auricular_region_female_adult_51_years	chr5	176411458	176411459	176411458	-	RAMPAGE_only	5	5	7	0.384127	2.521641	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.857143
right_atrium_auricular_region_female_adult_51_years	chr1	95117543	95117572	95117571	+	High_confidence	3	3	9	0.493877	2.725481	chr1	95117576	95117935	LINE|L1|L1M4b	+	chr1	95117438	95173878	TMEM56|ENST00000456991.5	+	95117438,95121054,95143890,95148701,95150207,95151324,95173815	95117827,95121184,95144056,95148791,95150266,95151419,95173878	0.666667
right_atrium_auricular_region_female_adult_51_years	chr17	59619894	59619923	59619894	+	High_confidence	488	523	1205	66.124700	5.938325	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.986722
right_atrium_auricular_region_female_adult_51_years	chr2	70574818	70574830	70574818	-	RAMPAGE_only	3	3	9	0.493877	3.169925	chr2	70574765	70575119	DNA|TcMar-Tigger|MER44A	+	chr2	70447279	70554015	TGFA|ENST00000295400.10	-	70447279,70453217,70456338,70465615,70514858,70553727	70450866,70453327,70456488,70465736,70514912,70554015	0.666667
right_atrium_auricular_region_female_adult_51_years	chr8	56559496	56559497	56559496	-	High_confidence	26	27	35	1.920634	4.593429	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.628571
right_atrium_auricular_region_female_adult_51_years	chr17	19251127	19251156	19251155	+	RAMPAGE_only	4	4	16	0.878004	3.773557	chr17	19251153	19251224	LINE|L2|L2b	-	chr17	19248393	19283180	EPN2|ENST00000584150.5	+	19248393,19249370,19281954,19282949	19248461,19249526,19282077,19283180	0.687500
right_atrium_auricular_region_female_adult_51_years	chr7	141280383	141280489	141280460	+	High_confidence	16	16	149	8.176415	5.590427	chr7	141280292	141280651	LTR|ERVL-MaLR|THE1B	+	chr7	141280397	141480380	STRG.15468.2	+	141280397,141437607,141470535	141280569,141437745,141480380	0.953020
right_atrium_auricular_region_female_adult_51_years	chr7	122802348	122802349	122802348	-	RAMPAGE_only	5	5	8	0.439002	2.807355	chr7	122802319	122802451	LINE|L2|L2b	+	chr7	122320002	122886357	CADPS2|ENST00000449022.6	-	122320002,122325476,122345573,122360787,122360929,122379367,122387025,122388582,122393195,122393440,122407539,122414067,122416060,122438340,122441511,122451373,122471374,122474380,122480851,122490080,122491311,122513248,122554549,122581178,122615180,122621480,122629247,122663236,122736954,122885998	122320338,122325581,122345681,122360820,122361013,122379442,122387173,122388738,122393315,122393582,122407696,122414076,122416164,122438464,122441575,122451475,122471562,122474517,122480860,122490281,122491420,122513315,122554689,122581290,122615299,122621717,122629328,122663569,122737068,122886357	0.750000
right_atrium_auricular_region_female_adult_51_years	chr16	20674403	20674411	20674404	+	High_confidence	3	6	12	0.658503	2.913977	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.833333
right_atrium_auricular_region_female_adult_51_years	chr10	57025647	57025668	57025647	+	RAMPAGE_only	7	7	12	0.658503	3.418296	chr10	57025620	57026209	DNA|hAT-Charlie|Charlie10	+	chr10	57031269	57032138	STRG.19138.1	+	57031269	57032138	0.833333
right_atrium_auricular_region_female_adult_51_years	chr8	18063185	18063216	18063197	-	High_confidence	12	12	63	3.457142	5.016402	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.952381
right_atrium_auricular_region_female_adult_51_years	chr4	182738443	182738455	182738443	+	RAMPAGE_only	5	6	9	0.493877	2.947703	chr4	182738424	182738481	SINE|tRNA|LFSINE_Vert	+	chr4	182680323	182755353	TENM3|ENST00000502950.1	+	182680323,182680542,182681813,182688165,182714086,182728964,182730199,182730877,182736807,182738400,182743169,182744142,182751799,182753449,182754384	182680349,182680737,182682014,182688351,182714233,182729181,182730319,182731139,182737075,182738544,182743419,182744163,182752032,182753604,182755353	1.000000
right_atrium_auricular_region_female_adult_51_years	chr4	185620090	185620126	185620107	-	RAMPAGE_only	10	21	87	4.774148	4.434455	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.873563
right_atrium_auricular_region_female_adult_51_years	chr13	52236320	52236333	52236325	-	RAMPAGE_only	6	6	21	1.152381	4.021928	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.666667
right_atrium_auricular_region_female_adult_51_years	chr1	166850123	166850125	166850123	+	RAMPAGE_only	5	9	9	0.493877	2.725481	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
right_atrium_auricular_region_female_adult_51_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	22	22	22	1.207256	3.970573	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	134485443	134485496	134485443	-	High_confidence	34	35	251	10.133370	6.134130	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.892430
right_atrium_auricular_region_female_adult_53_years	chr22	18149935	18149979	18149935	+	High_confidence	3	3	16	0.645952	3.577820	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
right_atrium_auricular_region_female_adult_53_years	chrX	53576938	53576972	53576956	-	RAMPAGE_only	3	4	16	0.645952	3.640224	chrX	53576946	53576998	LTR|ERV1|LTR43-int	+	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.937500
right_atrium_auricular_region_female_adult_53_years	chr19	45524130	45524131	45524130	+	RAMPAGE_only	5	5	7	0.282604	2.807355	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.714286
right_atrium_auricular_region_female_adult_53_years	chr10	50097006	50097014	50097013	+	RAMPAGE_only	8	12	23	0.928556	4.061482	chr10	50096912	50097097	LINE|L1|L1ME3G	+	chr10	50093142	50133146	STRG.19399.5	+	50093142,50093859,50095147,50095598,50097674,50104041,50106333,50110100,50113894,50117905,50119586,50125112,50125368,50126056,50127582,50129418,50130900,50132805	50093386,50093917,50095207,50095778,50097802,50104143,50106465,50110270,50113997,50118058,50119769,50125241,50125449,50126179,50127795,50130039,50131078,50133146	0.826087
right_atrium_auricular_region_female_adult_53_years	chr16	56256059	56256060	56256059	+	RAMPAGE_only	7	7	8	0.322976	2.807355	chr16	56254180	56256630	LINE|L1|L1MEj	-	chr16	56270238	56354939	GNAO1|ENST00000639055.1	+	56270238,56275930,56328630,56334728,56336730,56351383,56354865	56271120,56276072,56328791,56334857,56336860,56351537,56354939	0.750000
right_atrium_auricular_region_female_adult_53_years	chr16	19487898	19487901	19487898	-	High_confidence	5	7	11	0.444092	3.121928	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.818182
right_atrium_auricular_region_female_adult_53_years	chr7	100813651	100813703	100813651	-	High_confidence	2	2	13	0.524836	3.251629	chr7	100813306	100813615	SINE|Alu|AluSx1	-	chr7	100807364	100813339	EPHB4|ENST00000467515.1	-	100807364,100812746,100813094	100807580,100812994,100813339	0.846154
right_atrium_auricular_region_female_adult_53_years	chr16	4221895	4221921	4221895	-	RAMPAGE_only	5	5	22	0.888184	4.011365	chr16	4221649	4222087	LTR|ERVL-MaLR|MLT1C	-	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.590909
right_atrium_auricular_region_female_adult_53_years	chr22	33867653	33867684	33867683	-	RAMPAGE_only	18	18	39	1.574508	4.958354	chr22	33867663	33867821	SINE|MIR|MIRb	+	chr22	33650366	33861624	LARGE1|ENST00000430220.6	-	33650366,33761370,33861555	33650668,33761558,33861624	0.538462
right_atrium_auricular_region_female_adult_53_years	chr12	8681676	8681677	8681676	+	High_confidence	5	5	7	0.282604	2.807355	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.714286
right_atrium_auricular_region_female_adult_53_years	chr10	79435765	79435786	79435785	-	RAMPAGE_only	5	5	17	0.686324	3.969816	chr10	79435626	79435755	SINE|MIR|MIR3	-	chr10	79386036	79444219	ZCCHC24|ENST00000372333.3	-	79386036,79394275,79432557,79444101	79386458,79394440,79432758,79444219	1.000000
right_atrium_auricular_region_female_adult_53_years	chr11	14759566	14759573	14759567	+	RAMPAGE_only	4	5	10	0.403720	2.947703	chr11	14759548	14759845	SINE|Alu|AluSc	-	chr11	14643722	14872059	PDE3B|NM_000922.3	+	14643722,14771936,14786436,14789105,14803943,14818182,14819135,14830697,14831639,14832721,14834981,14843826,14859042,14861204,14867505,14869460	14645053,14771987,14786685,14789242,14804050,14818393,14819209,14830846,14831777,14832833,14835095,14844026,14859246,14861366,14867758,14872059	0.700000
right_atrium_auricular_region_female_adult_53_years	chr16	58438053	58438247	58438116	+	RAMPAGE_only	10	10	131	5.288731	5.901579	chr16	58437968	58438143	LTR|ERVL-MaLR|MLT1A	+	chr16	58421338	58441040	STRG.28198.1	+	58421338,58433809,58435691,58437155,58440544	58421421,58433948,58435823,58440478,58441040	0.992366
right_atrium_auricular_region_female_adult_53_years	chr12	53464815	53464850	53464828	+	RAMPAGE_only	5	7	24	0.968928	4.001629	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.916667
right_atrium_auricular_region_female_adult_53_years	chr5	147382877	147382900	147382899	+	High_confidence	3	3	13	0.524836	3.392747	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.846154
right_atrium_auricular_region_female_adult_53_years	chr9	91883553	91883575	91883553	-	High_confidence	29	30	54	2.180088	4.979437	chr9	91883438	91883648	DNA|hAT-Charlie|MER3	-	chr9	91722602	91883939	STRG.18021.2	-	91722602,91726540,91730909,91733121,91737390,91756070,91757271,91775740,91883257	91725107,91726743,91731155,91733436,91737518,91756101,91757559,91775818,91883939	1.000000
right_atrium_auricular_region_female_adult_53_years	chr5	156707969	156708023	156707969	+	High_confidence	17	19	67	2.704923	5.674079	chr5	156707915	156708257	DNA|hAT-Charlie|MER113	+	chr5	156707953	156767788	STRG.11631.7	+	156707953,156757580,156759216	156708138,156757704,156767788	0.940299
right_atrium_auricular_region_female_adult_53_years	chr1	20028336	20028337	20028336	+	High_confidence	8	8	10	0.403720	2.725481	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028429	20091158	PLA2G5|ENST00000465698.5	+	20028429,20059631,20068872,20084820,20086082,20088824,20089788,20090567	20028709,20059692,20069032,20084870,20086227,20088943,20089895,20091158	0.800000
right_atrium_auricular_region_female_adult_53_years	chr1	20084826	20084868	20084867	+	RAMPAGE_only	7	7	24	0.968928	4.220176	chr1	20084914	20085104	SINE|MIR|MIRb	+	chr1	20070294	20090828	PLA2G5|ENST00000478803.1	+	20070294,20076760,20084820,20086082,20088824,20089788,20090567	20070465,20076898,20084870,20086227,20088901,20089895,20090828	0.833333
right_atrium_auricular_region_female_adult_53_years	chr3	169812903	169812904	169812903	-	High_confidence	6	6	6	0.242232	2.584963	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	1.000000
right_atrium_auricular_region_female_adult_53_years	chr5	109383492	109383504	109383497	-	High_confidence	9	9	27	1.090044	4.363713	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.962963
right_atrium_auricular_region_female_adult_53_years	chr7	29483815	29483842	29483841	+	High_confidence	5	5	14	0.565208	3.700440	chr7	29483882	29484008	SINE|MIR|MIRb	+	chr7	29483815	29512740	CHN2|ENST00000410098.1	+	29483815,29495951,29499866,29504743,29507227,29509300,29512563	29483975,29496036,29500040,29504821,29507365,29509406,29512740	0.857143
right_atrium_auricular_region_female_adult_53_years	chr2	61971464	61971498	61971497	+	RAMPAGE_only	3	3	12	0.484464	3.418296	chr2	61971115	61971625	LTR|ERV1|LTR10D	-	chr2	61905646	62136247	COMMD1|ENST00000311832.5	+	61905646,62000700,62135830	61905858,62000982,62136247	0.916667
right_atrium_auricular_region_female_adult_53_years	chr21	29193399	29193460	29193459	+	High_confidence	52	53	116	4.683151	4.699073	chr21	29193019	29193674	LTR|ERV1|MER50B	+	chr21	29193493	29288205	LINC00189|NR_027072.2	+	29193493,29287983	29194260,29288205	0.974138
right_atrium_auricular_region_female_adult_53_years	chr19	5680234	5680259	5680240	-	High_confidence	28	28	97	3.916083	5.754235	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.979381
right_atrium_auricular_region_female_adult_53_years	chr18	31280621	31280650	31280649	-	High_confidence	55	59	219	8.841466	6.524308	chr18	31280496	31281235	LINE|L2|L2a	+	chr18	31257295	31280971	STRG.30725.1	-	31257295,31280098,31280574,31280878	31257935,31280177,31280662,31280971	0.863014
right_atrium_auricular_region_female_adult_53_years	chr2	11201309	11201371	11201309	-	RAMPAGE_only	13	13	44	1.776368	4.943593	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11179760	11221340	STRG.3600.2	-	11179760,11184665,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197	11183440,11184769,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221340	0.977273
right_atrium_auricular_region_female_adult_53_years	chr1	23178479	23178541	23178522	-	High_confidence	39	39	131	5.288731	5.640816	chr1	23178269	23178491	SINE|MIR|MIRb	-	chr1	23084029	23177808	LUZP1|ENST00000302291.8	-	23084029,23091189,23109021,23168765,23177490	23089053,23094380,23109127,23169024,23177808	0.786260
right_atrium_auricular_region_female_adult_53_years	chr4	8410214	8410240	8410239	-	RAMPAGE_only	3	3	9	0.363348	2.947703	chr4	8410043	8410198	DNA|hAT-Charlie|MER20	-	chr4	8374467	8415855	ACOX3|ENST00000510365.5	-	8374467,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765	8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415855	1.000000
right_atrium_auricular_region_female_adult_53_years	chr18	31227477	31227481	31227477	-	High_confidence	31	31	67	2.704923	5.328223	chr18	31226911	31227662	LINE|L2|L2	+	chr18	31124515	31227726	STRG.30723.1	-	31124515,31128668,31130792,31131593,31132567,31133890,31134571,31139747,31140041,31141998,31143656,31145610,31148497,31154773,31156042,31157370,31159444,31227437	31128465,31130711,31130838,31131842,31132689,31134130,31134784,31139890,31140301,31142184,31143791,31145777,31148642,31154929,31156162,31157573,31159529,31227726	0.820896
right_atrium_auricular_region_female_adult_53_years	chr5	180909572	180909573	180909572	+	High_confidence	6	6	8	0.322976	2.750000	chr5	180909597	180909731	SINE|Alu|FLAM_C	+	chr5	180909572	180948353	BTNL8|ENST00000514448.5	+	180909572,180911338,180947511	180909697,180911614,180948353	0.500000
right_atrium_auricular_region_female_adult_53_years	chr8	93795071	93795114	93795113	+	High_confidence	6	8	34	1.372648	4.653496	chr8	93794953	93795181	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.911765
right_atrium_auricular_region_female_adult_53_years	chr2	27772143	27772180	27772143	+	High_confidence	2	2	10	0.403720	2.947703	chr2	27772098	27772242	SINE|MIR|MIR3	-	chr2	27772189	27779697	MRPL33|ENST00000476552.1	+	27772189,27772673,27774423,27779432	27772385,27772692,27774530,27779697	0.700000
right_atrium_auricular_region_female_adult_53_years	chr1	23178123	23178161	23178160	-	High_confidence	9	9	34	1.372648	4.359378	chr1	23178154	23178237	SINE|MIR|MIRb	-	chr1	23084029	23177808	LUZP1|ENST00000302291.8	-	23084029,23091189,23109021,23168765,23177490	23089053,23094380,23109127,23169024,23177808	0.911765
right_atrium_auricular_region_female_adult_53_years	chr3	37031713	37031779	37031713	+	RAMPAGE_only	6	6	24	0.968928	4.229871	chr3	37031587	37031713	SINE|MIR|MIRc	+	chr3	37025830	37047740	MLH1|ENST00000616768.4	+	37025830,37028783,37040185,37042267,37047518	37026007,37028932,37040294,37042331,37047740	0.666667
right_atrium_auricular_region_female_adult_53_years	chr13	67326569	67326570	67326569	+	High_confidence	6	7	9	0.363348	3.000000	chr13	67325927	67326676	LTR|ERVL|ERVL-B4-int	-	chr13	67326462	67380101	STRG.24557.1	+	67326462,67335677,67379550	67326691,67335833,67380101	0.888889
right_atrium_auricular_region_female_adult_53_years	chr19	40280802	40280803	40280802	-	High_confidence	6	6	9	0.363348	2.947703	chr19	40280545	40281038	LINE|L2|L2a	+	chr19	40242039	40280832	AKT2|ENST00000486368.6	-	40242039,40242533,40255157,40256925,40265221,40280781	40242069,40242687,40255269,40257054,40265351,40280832	0.888889
right_atrium_auricular_region_female_adult_53_years	chr13	106561950	106561951	106561950	-	High_confidence	45	45	48	1.937856	5.208411	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.895833
right_atrium_auricular_region_female_adult_53_years	chr9	20658312	20658349	20658348	+	High_confidence	14	17	49	1.978228	5.216551	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658336	20770112	STRG.17383.5	+	20658336,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.918367
right_atrium_auricular_region_female_adult_53_years	chr8	18063197	18063216	18063215	-	High_confidence	14	14	62	2.503064	5.560976	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.967742
right_atrium_auricular_region_female_adult_53_years	chr14	81192614	81192655	81192631	-	RAMPAGE_only	2	2	11	0.444092	3.321928	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.909091
right_atrium_auricular_region_female_adult_53_years	chr7	101217578	101217599	101217598	-	High_confidence	7	7	24	0.968928	4.262692	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.958333
right_atrium_auricular_region_female_adult_53_years	chr5	160412462	160412478	160412462	-	RAMPAGE_only	3	3	8	0.322976	2.807355	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160406348	160408421	SLU7|ENST00000520841.1	-	160406348,160407475,160407745,160407970,160408328	160406629,160407615,160407813,160408068,160408421	0.750000
right_atrium_auricular_region_female_adult_53_years	chr8	11864408	11864439	11864410	-	RAMPAGE_only	3	5	16	0.645952	3.773557	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.625000
right_atrium_auricular_region_female_adult_53_years	chr12	12184004	12184033	12184004	-	RAMPAGE_only	2	2	8	0.322976	2.521641	chr12	12183981	12184016	LINE|RTE-BovB|MamRTE1	-	chr12	12116028	12203323	STRG.22574.4	-	12116028,12124564,12125295,12126690,12130782,12131820,12135174,12138324,12147365,12148941,12150835,12158828,12159779,12162192,12164272,12165078,12179809,12181042,12183979,12186922,12203202	12121420,12124662,12125432,12126921,12130893,12132034,12135300,12138534,12147556,12149153,12151038,12159155,12159964,12162419,12164562,12165295,12179981,12181439,12184111,12187119,12203323	0.875000
right_atrium_auricular_region_female_adult_53_years	chr5	82274961	82274987	82274961	-	RAMPAGE_only	2	2	6	0.242232	2.584963	chr5	82274934	82275133	LINE|L2|L2b	-	chr5	82273319	82278416	RPS23|NM_001025.4	-	82273319,82276397,82277692,82278319	82276255,82276518,82277852,82278416	1.000000
right_atrium_auricular_region_female_adult_53_years	chr22	39968894	39968905	39968894	+	High_confidence	4	5	9	0.363348	3.000000	chr22	39968796	39969204	LINE|L2|L2b	+	chr22	39968732	39971105	STRG.34851.2	+	39968732,39969410,39970904	39969168,39969533,39971105	0.555556
right_atrium_auricular_region_female_adult_53_years	chr9	68975842	68975846	68975842	-	High_confidence	1147	1190	2081	84.014116	6.316693	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.761173
right_atrium_auricular_region_female_adult_53_years	chr13	37934739	37934767	37934749	+	High_confidence	33	33	141	5.692451	6.046111	chr13	37934381	37935273	LTR|ERV1|LTR1D	-	chr13	37934564	38048169	LINC02334|ENST00000617568.1	+	37934564,37997811,38013403,38029648,38043950	37935037,37997937,38013501,38029691,38048169	0.929078
right_atrium_auricular_region_female_adult_53_years	chr1	196404228	196404273	196404272	-	High_confidence	153	204	512	20.670460	6.094596	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225785	196404262	STRG.2807.5	-	196225785,196235985,196258193,196273467,196280859,196282272,196285656,196305233,196315891,196317147,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196228335,196236070,196258494,196273488,196280988,196282356,196285758,196305345,196316026,196317269,196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404262	0.898438
right_atrium_auricular_region_female_adult_53_years	chr1	155343321	155343387	155343321	-	RAMPAGE_only	13	13	28	1.130416	4.208410	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.964286
right_atrium_auricular_region_female_adult_53_years	chr9	696414	696415	696414	+	RAMPAGE_only	5	7	7	0.282604	2.807355	chr9	696299	696580	LINE|L2|L2c	-	chr9	693670	746102	STRG.17141.4	+	693670,710803,730050,731157,732377,734747,738284,740791,742204,744490,745172	693786,713464,730248,731266,732617,734835,738504,740934,742405,744589,746102	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	202582562	202582590	202582571	+	RAMPAGE_only	5	5	18	0.726696	3.734522	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.944444
right_atrium_auricular_region_female_adult_53_years	chr8	30508143	30508158	30508157	+	RAMPAGE_only	4	4	9	0.363348	2.500000	chr8	30507969	30508353	LTR|ERVL-MaLR|MLT1B	+	chr8	30502250	30547483	STRG.16159.12	+	30502250,30504285,30544493,30547291	30502631,30504436,30544624,30547483	0.555556
right_atrium_auricular_region_female_adult_53_years	chr19	45424382	45424396	45424382	-	High_confidence	2	3	8	0.322976	3.000000	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	0.875000
right_atrium_auricular_region_female_adult_53_years	chr1	166850083	166850144	166850143	+	RAMPAGE_only	5	5	19	0.767068	3.836592	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.947368
right_atrium_auricular_region_female_adult_53_years	chr12	12927723	12927741	12927733	+	High_confidence	59	59	130	5.248359	6.507660	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.638462
right_atrium_auricular_region_female_adult_53_years	chr11	113246364	113246368	113246367	+	High_confidence	7	10	14	0.565208	3.546594	chr11	113246334	113246435	SINE|5S-Deu-L2|AmnSINE1	+	chr11	113246107	113260317	NCAM1|ENST00000534516.2	+	113246107,113255876,113260145	113246370,113256001,113260317	0.571429
right_atrium_auricular_region_female_adult_53_years	chrX	5726222	5726242	5726241	-	High_confidence	4	6	12	0.484464	3.459432	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.583333
right_atrium_auricular_region_female_adult_53_years	chr2	182928788	182928798	182928788	-	RAMPAGE_only	6	6	12	0.484464	3.095795	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.750000
right_atrium_auricular_region_female_adult_53_years	chr2	9422817	9422818	9422817	-	High_confidence	7	7	10	0.403720	3.321928	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NM_001319068.1	-	9405680,9407448,9408112,9412268,9414177,9418625,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9422660	0.600000
right_atrium_auricular_region_female_adult_53_years	chr3	125061445	125061484	125061483	+	High_confidence	12	12	22	0.888184	4.297079	chr3	125060193	125061692	LINE|L2|L2b	-	chr3	125061397	125063636	STRG.7410.1	+	125061397,125061870	125061523,125063636	0.772727
right_atrium_auricular_region_female_adult_53_years	chr11	8757099	8757155	8757099	-	High_confidence	3	3	16	0.645952	3.875000	chr11	8757094	8757244	SINE|MIR|MIRb	+	chr11	8730874	8757152	ST5|ENST00000533580.5	-	8730874,8750620,8757045	8731209,8750725,8757152	0.937500
right_atrium_auricular_region_female_adult_53_years	chr9	92536651	92536675	92536651	-	High_confidence	7	10	19	0.767068	3.932138	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	1.000000
right_atrium_auricular_region_female_adult_53_years	chr6	20334469	20334472	20334469	-	High_confidence	108	117	160	6.459519	5.468935	chr6	20334196	20334750	LTR|ERVL-MaLR|MLT1K	-	chr6	20331334	20334476	STRG.12105.1	-	20331334,20334133	20331525,20334476	0.956250
right_atrium_auricular_region_female_adult_53_years	chr11	18706991	18707033	18707032	-	High_confidence	7	9	39	1.574508	4.580023	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18704393	18707024	STRG.20819.1	-	18704393,18705816,18706913	18704538,18706146,18707024	0.897436
right_atrium_auricular_region_female_adult_53_years	chr1	27138441	27138506	27138505	-	RAMPAGE_only	5	5	34	1.372648	4.413910	chr1	27138283	27138517	LINE|L2|L2b	+	chr1	27105450	27154598	SLC9A1|ENST00000374086.3	-	27105450,27107647,27109526,27113825,27153982	27106087,27107865,27109777,27114286,27154598	0.882353
right_atrium_auricular_region_female_adult_53_years	chr1	201360453	201360454	201360453	-	RAMPAGE_only	30	30	33	1.332276	3.986454	chr1	201360361	201360542	SINE|MIR|MIR	-	chr1	201359007	201363350	TNNT2|ENST00000476888.5	-	201359007,201359622,201361278,201361950,201362385,201363295	201359255,201359663,201361369,201362022,201362394,201363350	0.939394
right_atrium_auricular_region_female_adult_53_years	chr1	226364201	226364202	226364201	-	High_confidence	6	6	7	0.282604	2.584963	chr1	226364119	226364211	SINE|MIR|MIRb	-	chr1	226361318	226364372	PARP1|ENST00000463968.5	-	226361318,226361968,226363098,226363942	226361541,226362083,226363160,226364372	0.714286
right_atrium_auricular_region_female_adult_53_years	chr2	217937115	217937136	217937115	-	High_confidence	4	5	11	0.444092	3.459432	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.818182
right_atrium_auricular_region_female_adult_53_years	chr2	37020215	37020264	37020224	-	RAMPAGE_only	9	9	42	1.695624	4.765312	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	37008167	37013995	HEATR5B|ENST00000471051.1	-	37008167,37013840	37008848,37013995	0.666667
right_atrium_auricular_region_female_adult_53_years	chr4	54264985	54265041	54265029	+	RAMPAGE_only	4	4	31	1.251532	4.361792	chr4	54265070	54265216	SINE|MIR|MIR3	+	chr4	54233089	54298245	STRG.8823.4	+	54233089,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54280315,54285370,54285840,54287429,54288798,54289008,54290312,54295124	54233443,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54280482,54285486,54285963,54287541,54288898,54289114,54290554,54298245	1.000000
right_atrium_auricular_region_female_adult_53_years	chr4	81154211	81154214	81154211	-	High_confidence	7	8	15	0.605580	3.773557	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	1.000000
right_atrium_auricular_region_female_adult_53_years	chr2	217909725	217909743	217909736	-	RAMPAGE_only	11	11	30	1.211160	4.319903	chr2	217909603	217909688	DNA|hAT-Charlie|MER5A	-	chr2	217848883	217905461	TNS1|ENST00000413554.5	-	217848883,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217905295	217849087,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217905461	0.966667
right_atrium_auricular_region_female_adult_53_years	chr11	113878754	113878755	113878754	-	RAMPAGE_only	7	7	7	0.282604	2.807355	chr11	113878589	113878950	LTR|ERVL-MaLR|THE1A	-	chr11	113797873	113875570	USP28|ENST00000003302.8	-	113797873,113801482,113803157,113803797,113804672,113804867,113806488,113808297,113809062,113812275,113813884,113815173,113817657,113823604,113827232,113829196,113830866,113831919,113833419,113834248,113840597,113841662,113852500,113854257,113875444	113799415,113801678,113803281,113803877,113804751,113805046,113806584,113808437,113809254,113812504,113813955,113815382,113817837,113823700,113827360,113829345,113830943,113831993,113833557,113834335,113840757,113841768,113852633,113854335,113875570	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	12662795	12662796	12662795	-	RAMPAGE_only	17	17	17	0.686324	3.969816	chr3	12662589	12662820	LINE|L2|L2c	+	chr3	12584332	12664125	RAF1|ENST00000423275.5	-	12584332,12584846,12585121,12585680,12587590,12590797,12591707,12599690,12600151,12600387,12604135,12606200,12608765,12609232,12618514,12663812	12584657,12584981,12585253,12585799,12587637,12590974,12591792,12599808,12600279,12600415,12604289,12606299,12608923,12609335,12618747,12664125	0.588235
right_atrium_auricular_region_female_adult_53_years	chr10	60205794	60205810	60205797	-	RAMPAGE_only	2	2	9	0.363348	2.750000	chr10	60205553	60205752	SINE|tRNA-RTE|MamSINE1	-	chr10	60108900	60300482	STRG.19465.3	-	60108900,60114224,60134270,60137341,60138963,60166823,60172307,60172899,60173087,60181328,60186714,60196144,60196526,60198339,60200128,60203001,60205791,60208035,60213411,60234687,60261858,60263834,60270130,60278773,60279049,60279537,60300318	60109054,60114331,60134358,60137353,60139087,60166896,60172403,60172998,60173186,60181427,60186912,60196243,60196625,60198537,60200227,60203100,60205890,60208233,60213510,60234786,60261957,60264020,60270229,60278872,60279148,60279639,60300482	0.888889
right_atrium_auricular_region_female_adult_53_years	chr7	139731052	139731086	139731085	-	RAMPAGE_only	6	6	18	0.726696	3.905765	chr7	139730703	139731118	LTR|ERVL-MaLR|MLT1C	+	chr7	139583523	139717013	HIPK2|ENST00000342645.7	-	139583523,139600434,139604080,139613201,139614285,139620400,139626600,139628952,139631164,139631601,139715931	139584064,139600596,139604223,139613323,139614493,139620563,139626785,139629039,139631284,139631725,139717013	1.000000
right_atrium_auricular_region_female_adult_53_years	chr6	130894344	130894345	130894344	-	RAMPAGE_only	7	7	7	0.282604	2.807355	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	1.000000
right_atrium_auricular_region_female_adult_53_years	chr13	113425058	113425081	113425058	-	RAMPAGE_only	2	2	12	0.484464	3.459432	chr13	113424975	113425033	LINE|L2|L2a	-	chr13	113421939	113444595	STRG.24806.4	-	113421939,113422825,113424216,113425051,113428951,113433741,113444424	113422671,113422979,113424349,113425179,113429092,113433867,113444595	0.750000
right_atrium_auricular_region_female_adult_53_years	chr2	217937254	217937255	217937254	-	High_confidence	8	8	9	0.363348	2.750000	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.555556
right_atrium_auricular_region_female_adult_53_years	chr12	2798807	2798810	2798807	+	High_confidence	5	5	9	0.363348	3.000000	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.666667
right_atrium_auricular_region_female_adult_53_years	chr11	119046573	119046592	119046587	-	RAMPAGE_only	3	4	12	0.484464	3.095795	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.916667
right_atrium_auricular_region_female_adult_53_years	chr14	32075864	32075880	32075879	+	High_confidence	9	9	24	0.968928	3.688722	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32075839	32154827	STRG.24992.1	+	32075839,32076457,32090501,32117139,32146262,32149901,32152422,32154620	32076217,32076657,32094386,32117287,32146340,32150033,32152528,32154827	1.000000
right_atrium_auricular_region_female_adult_53_years	chr5	16625365	16625413	16625365	+	High_confidence	40	40	213	8.599234	5.407412	chr5	16625310	16625799	LTR|ERVL|LTR105_Mam	+	chr5	16625327	16627876	STRG.10024.1	+	16625327,16626069	16625756,16627876	0.924883
right_atrium_auricular_region_female_adult_53_years	chr14	44912624	44912629	44912628	-	High_confidence	5	5	14	0.565208	3.664498	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.642857
right_atrium_auricular_region_female_adult_53_years	chr11	114295336	114295370	114295336	+	High_confidence	3	3	7	0.282604	2.807355	chr11	114294850	114295386	LTR|ERV1|LTR35A	-	chr11	114295812	114312516	NNMT|NM_006169.2	+	114295812,114297950,114312044	114296710,114298158,114312516	0.714286
right_atrium_auricular_region_female_adult_53_years	chr19	45423274	45423299	45423286	-	High_confidence	2	2	12	0.484464	3.277613	chr19	45423071	45423243	SINE|MIR|MIR3	-	chr19	45413676	45423485	ERCC1|ENST00000589381.5	-	45413676,45413962,45414860,45416820,45419097,45420323,45423269	45413745,45414034,45414960,45416897,45419197,45420427,45423485	0.666667
right_atrium_auricular_region_female_adult_53_years	chr11	12277581	12277595	12277581	+	RAMPAGE_only	2	2	8	0.322976	2.750000	chr11	12277475	12277670	LINE|L2|L2b	-	chr11	12276079	12287314	MICAL2|ENST00000645812.1	+	12276079,12276258,12280932,12287086	12276166,12276715,12281099,12287314	0.625000
right_atrium_auricular_region_female_adult_53_years	chr22	41604043	41604061	41604043	-	RAMPAGE_only	3	5	9	0.363348	3.000000	chr22	41603905	41604023	LINE|L2|L2c	-	chr22	41600892	41602523	DESI1|ENST00000468151.1	-	41600892,41602423	41601190,41602523	0.888889
right_atrium_auricular_region_female_adult_53_years	chr5	137858482	137858483	137858482	-	RAMPAGE_only	6	6	9	0.363348	3.169925	chr5	137858418	137858761	DNA|TcMar-Tigger|MER44A	+	chr5	137617499	137888501	STRG.11279.1	-	137617499,137625752,137628296,137634036,137637293,137638952,137639859,137658130,137661914,137677544,137692284,137698286,137709749,137720464,137814332,137814509,137858427,137859055,137888159	137622126,137625896,137628437,137634165,137637395,137639150,137639977,137658280,137662031,137677654,137692447,137698408,137709856,137720584,137814376,137814597,137858481,137859263,137888501	0.555556
right_atrium_auricular_region_female_adult_53_years	chr15	90762307	90762401	90762337	+	High_confidence	13	13	84	3.391247	5.595962	chr15	90762254	90762815	LINE|L2|L2b	-	chr15	90762363	90769181	BLM|ENST00000559426.5	+	90762363,90762965,90765295,90766909,90769132	90762422,90763157,90765414,90767023,90769181	0.702381
right_atrium_auricular_region_female_adult_53_years	chr5	55982799	55982800	55982799	-	High_confidence	12	12	18	0.726696	3.572469	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.888889
right_atrium_auricular_region_female_adult_53_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	6	7	7	0.282604	2.807355	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888512	77933384	NEXN|ENST00000401035.7	+	77888512,77916054,77917959,77918124,77925187,77926413,77926715,77929315,77933281	77888759,77916133,77918038,77918273,77925229,77926611,77926892,77929504,77933384	0.571429
right_atrium_auricular_region_female_adult_53_years	chrX	53546436	53546447	53546436	-	RAMPAGE_only	3	3	10	0.403720	2.641604	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53542442	53547809	HUWE1|ENST00000468322.2	-	53542442,53543885,53545028,53546435,53546703,53547672	53542539,53543968,53545161,53546592,53546825,53547809	0.600000
right_atrium_auricular_region_female_adult_53_years	chr12	2049183	2049203	2049183	+	RAMPAGE_only	2	2	7	0.282604	2.521641	chr12	2049171	2049377	SINE|MIR|MIR	+	chr12	2053249	2697949	CACNA1C|NM_001129843.1	+	2053249,2115223,2120324,2448975,2457566,2486103,2493189,2504841,2512811,2549942,2556950,2566421,2567568,2581589,2582821,2584502,2585375,2585834,2593212,2595873,2597436,2601853,2605080,2605678,2606610,2606983,2608510,2610540,2611902,2634296,2648474,2651639,2653834,2655146,2664824,2665580,2666685,2668932,2674540,2677093,2677732,2679443,2682549,2685735,2686165,2688446,2690899	2053611,2115545,2120430,2449115,2457706,2486262,2493386,2504945,2512984,2550033,2556977,2566582,2567794,2581797,2582942,2584617,2585496,2585904,2593345,2596003,2597496,2601960,2605168,2605786,2606663,2607130,2608712,2610699,2612013,2634380,2648507,2651768,2653900,2655238,2664990,2665708,2666782,2669035,2674642,2677221,2677867,2679796,2682678,2685842,2686269,2688779,2697949	0.857143
right_atrium_auricular_region_female_adult_53_years	chr9	39809852	39809865	39809864	-	High_confidence	9	9	39	1.574508	4.311043	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803327	39810013	STRG.17610.2	-	39803327,39809485,39809730	39803859,39809615,39810013	0.794872
right_atrium_auricular_region_female_adult_53_years	chr1	33021373	33021417	33021416	-	High_confidence	3	3	12	0.484464	2.913977	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010518	33021690	STRG.718.5	-	33010518,33014521,33021366,33021592	33013402,33014594,33021461,33021690	0.916667
right_atrium_auricular_region_female_adult_53_years	chr5	66380745	66380766	66380745	-	RAMPAGE_only	3	3	8	0.322976	2.750000	chr5	66380126	66382750	LINE|L1|L1PB2	+	chr5	66345011	66440531	STRG.10418.1	-	66345011,66440146	66351228,66440531	1.000000
right_atrium_auricular_region_female_adult_53_years	chr17	19386333	19386371	19386333	-	High_confidence	3	4	17	0.686324	3.750000	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.941176
right_atrium_auricular_region_female_adult_53_years	chr6	155282781	155282806	155282800	-	RAMPAGE_only	8	13	25	1.009300	4.088779	chr6	155282731	155283026	SINE|Alu|AluY	-	chr6	155257652	155297069	TFB1M|ENST00000468889.5	-	155257652,155260272,155285157,155296952	155257908,155260400,155285277,155297069	0.520000
right_atrium_auricular_region_female_adult_53_years	chr1	205917550	205917591	205917590	-	High_confidence	7	8	34	1.372648	4.410417	chr1	205917586	205917804	SINE|MIR|MIRc	+	chr1	205913047	205917585	STRG.2959.2	-	205913047,205917282,205917499	205915404,205917354,205917585	1.000000
right_atrium_auricular_region_female_adult_53_years	chr4	119145710	119145750	119145710	+	RAMPAGE_only	2	2	8	0.322976	3.000000	chr4	119145674	119147458	LINE|L1|L1MD1	-	chr4	119135783	119187789	MYOZ2|ENST00000307128.5	+	119135783,119136511,119150871,119158021,119164210,119185965	119135982,119136601,119151041,119158151,119164394,119187789	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	231422744	231422749	231422748	-	RAMPAGE_only	4	5	8	0.322976	2.807355	chr1	231422714	231422871	SINE|MIR|MIRb	-	chr1	231363750	231425044	EGLN1|ENST00000366641.3	-	231363750,231367568,231370561,231373979,231420997	231366475,231367636,231370698,231374099,231425044	0.875000
right_atrium_auricular_region_female_adult_53_years	chr11	3380960	3380961	3380960	+	High_confidence	8	8	8	0.322976	3.000000	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.625000
right_atrium_auricular_region_female_adult_53_years	chr8	30812418	30812454	30812453	-	High_confidence	11	11	44	1.776368	5.129639	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.977273
right_atrium_auricular_region_female_adult_53_years	chr9	539513	539514	539513	+	RAMPAGE_only	6	6	6	0.242232	2.584963	chr9	539493	539786	SINE|Alu|AluJo	-	chr9	547316	549531	AL392089.1|ENST00000441028.1	+	547316,549189	547341,549531	0.666667
right_atrium_auricular_region_female_adult_53_years	chr9	98943562	98943578	98943575	+	High_confidence	4	7	17	0.686324	3.750000	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.941176
right_atrium_auricular_region_female_adult_53_years	chr2	201115997	201116024	201116023	+	High_confidence	6	6	10	0.403720	2.921928	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	151539265	151539288	151539265	-	RAMPAGE_only	2	2	6	0.242232	2.584963	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.666667
right_atrium_auricular_region_female_adult_53_years	chr13	67326473	67326496	67326473	+	High_confidence	4	4	9	0.363348	2.750000	chr13	67325927	67326676	LTR|ERVL|ERVL-B4-int	-	chr13	67326462	67380101	STRG.24557.1	+	67326462,67335677,67379550	67326691,67335833,67380101	0.777778
right_atrium_auricular_region_female_adult_53_years	chr8	143281669	143281687	143281669	-	High_confidence	19	19	57	2.301204	4.957902	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281250	MINCR|ENST00000519852.5	-	143280827,143281092	143280997,143281250	0.543860
right_atrium_auricular_region_female_adult_53_years	chrX	24662752	24662765	24662752	+	High_confidence	10	11	26	1.049672	3.829275	chrX	24662451	24662978	LTR|ERVL|LTR75	+	chrX	24662691	24668482	STRG.35258.1	+	24662691,24668137	24662885,24668482	0.961538
right_atrium_auricular_region_female_adult_53_years	chr3	28347653	28347654	28347653	-	High_confidence	6	6	8	0.322976	2.807355	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.875000
right_atrium_auricular_region_female_adult_53_years	chr17	57616058	57616074	57616073	+	RAMPAGE_only	3	3	6	0.242232	2.584963	chr17	57616113	57616256	SINE|MIR|MIRb	+	chr17	57596902	57684685	STRG.29915.7	+	57596902,57615969,57627228,57652098,57674971,57679548	57596950,57616084,57627303,57652161,57675126,57684685	0.666667
right_atrium_auricular_region_female_adult_53_years	chr9	127531669	127531689	127531669	-	RAMPAGE_only	2	2	7	0.282604	2.584963	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	0.571429
right_atrium_auricular_region_female_adult_53_years	chr14	49771632	49771673	49771672	+	RAMPAGE_only	8	8	24	0.968928	4.251629	chr14	49771716	49772002	SINE|Alu|AluSz	+	chr14	49768167	49783122	KLHDC2|ENST00000557247.1	+	49768167,49771593,49774560,49777838,49778177,49778410,49779594,49779747,49780212,49782369,49782829	49768621,49771673,49774678,49777954,49778259,49778494,49779675,49779806,49780322,49782457,49783122	1.000000
right_atrium_auricular_region_female_adult_53_years	chr22	32059169	32059191	32059169	+	High_confidence	1041	1069	2016	81.389937	5.435203	chr22	32059153	32059234	SINE|Alu|AluSz6	+	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	0.965774
right_atrium_auricular_region_female_adult_53_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	7	7	7	0.282604	2.521641	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.857143
right_atrium_auricular_region_female_adult_53_years	chr12	94996905	94996906	94996905	-	High_confidence	6	6	6	0.242232	2.584963	chr12	94996903	94997043	SINE|MIR|MIR3	+	chr12	94971331	94997447	NDUFA12|ENST00000550187.5	-	94971331,94994169,94997307	94971620,94994257,94997447	1.000000
right_atrium_auricular_region_female_adult_53_years	chr11	66192425	66192500	66192458	+	RAMPAGE_only	4	5	20	0.807440	3.932138	chr11	66192188	66192558	LINE|L2|L2b	-	chr11	66100762	66216250	PACS1|ENST00000527380.1	+	66100762,66193485,66210361,66211133,66216118	66100874,66193573,66210451,66211259,66216250	0.800000
right_atrium_auricular_region_female_adult_53_years	chrX	44314305	44314308	44314307	-	RAMPAGE_only	4	6	8	0.322976	2.521641	chrX	44314142	44314275	LINE|L1|L1ME3Cz	-	chrX	44148664	44343672	EFHC2|ENST00000420999.1	-	44148664,44163921,44176291,44178366,44229648,44232480,44235304,44242120,44248271,44248802,44250193,44261074,44272685,44312567,44343546	44148896,44164027,44176384,44178564,44229779,44232677,44235447,44242289,44248410,44248916,44250445,44261298,44272836,44312756,44343672	0.625000
right_atrium_auricular_region_female_adult_53_years	chr10	68140172	68140181	68140178	+	RAMPAGE_only	11	12	33	1.332276	4.327820	chr10	68139795	68140247	LINE|L2|L2a	-	chr10	68109495	68162166	MYPN|ENST00000373675.3	+	68109495,68121437,68142939,68145474,68148352,68150039,68158485,68161728	68109723,68122340,68143115,68145526,68148467,68150111,68158627,68162166	0.666667
right_atrium_auricular_region_female_adult_53_years	chr3	57267745	57267782	57267781	+	RAMPAGE_only	5	6	17	0.686324	3.452820	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.882353
right_atrium_auricular_region_female_adult_53_years	chr10	35449689	35449732	35449724	+	RAMPAGE_only	18	30	104	4.198687	5.680202	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.644231
right_atrium_auricular_region_female_adult_53_years	chr1	95117535	95117572	95117571	+	High_confidence	3	3	10	0.403720	2.947703	chr1	95117576	95117935	LINE|L1|L1M4b	+	chr1	95117438	95173878	TMEM56|ENST00000456991.5	+	95117438,95121054,95143890,95148701,95150207,95151324,95173815	95117827,95121184,95144056,95148791,95150266,95151419,95173878	0.600000
right_atrium_auricular_region_female_adult_53_years	chr16	23141221	23141254	23141233	-	RAMPAGE_only	46	51	150	6.055799	6.008185	chr16	23140602	23141239	LINE|L2|L2	+	chr16	23061405	23149270	USP31|ENST00000219689.11	-	23061405,23072044,23073721,23079945,23082437,23084859,23085584,23087091,23087723,23090623,23102318,23105440,23106212,23106398,23108045,23148637	23069616,23072197,23073880,23080171,23082557,23084989,23085662,23087186,23087835,23090804,23102463,23105576,23106305,23106487,23108183,23149270	0.860000
right_atrium_auricular_region_female_adult_53_years	chr1	212792469	212792473	212792472	-	High_confidence	7	9	14	0.565208	3.324863	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.928571
right_atrium_auricular_region_female_adult_53_years	chr4	94664635	94664668	94664635	+	RAMPAGE_only	24	24	69	2.785667	4.361031	chr4	94664587	94664879	SINE|Alu|AluSx	+	chr4	94584400	94665481	PDLIM5|ENST00000380176.7	+	94584400,94585564,94586407,94618003,94640275,94654459,94657426,94662421,94663977	94585003,94585737,94586444,94618191,94640450,94654640,94657547,94662537,94665481	0.956522
right_atrium_auricular_region_female_adult_53_years	chr1	145745359	145745384	145745383	-	RAMPAGE_only	6	6	11	0.444092	3.277613	chr1	145745196	145745430	SINE|Alu|AluJb	+	chr1	145738867	145824077	RNF115|ENST00000582693.4	-	145738867,145747994,145750406,145751437,145752977,145771710,145784538,145788907,145823771	145746997,145748110,145750500,145751510,145753049,145771919,145784596,145788966,145824077	1.000000
right_atrium_auricular_region_female_adult_53_years	chr11	307580	307581	307580	-	RAMPAGE_only	14	14	14	0.565208	3.664498	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	0.928571
right_atrium_auricular_region_female_adult_53_years	chr8	144063367	144063458	144063367	-	High_confidence	6	6	63	2.543436	5.647837	chr8	144063259	144063379	LINE|L2|L2a	+	chr8	144053212	144063544	STRG.17065.2	-	144053212,144054560,144054811,144055028,144055787,144056146,144056384,144056617,144056947,144057207,144057447,144057855,144058009,144058238,144058495,144058772,144058979,144059598,144059861,144060652,144063303	144053393,144054735,144054913,144055189,144055939,144056259,144056523,144056755,144057118,144057320,144057713,144057923,144058148,144058404,144058691,144058896,144059079,144059790,144060085,144061257,144063544	0.825397
right_atrium_auricular_region_female_adult_53_years	chr3	186990718	186990738	186990718	+	RAMPAGE_only	13	13	26	1.049672	3.542481	chr3	186990703	186990831	SINE|Alu|AluSq2	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.884615
right_atrium_auricular_region_female_adult_53_years	chr17	47067431	47067432	47067431	-	High_confidence	5	5	7	0.282604	2.521641	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.857143
right_atrium_auricular_region_female_adult_53_years	chr12	80217404	80217413	80217412	+	High_confidence	4	4	9	0.363348	3.000000	chr12	80217325	80217441	SINE|MIR|MIRc	-	chr12	80217427	80379079	STRG.23511.2	+	80217427,80217597,80219813,80222090,80229256,80232891,80238850,80239332,80251692,80252075,80253465,80254523,80255039,80256336,80257824,80261968,80265000,80266450,80267252,80270101,80271647,80278167,80279027,80296826,80302633,80305575,80310610,80313475,80314304,80318545,80320421,80323722,80328664,80329050,80333004,80335962,80336412,80336796,80336911,80339074,80341947,80352294,80353324,80355735,80356415,80356806,80358247,80358670,80358859,80366573,80367560,80368204,80370569,80372018,80377122,80377847	80217483,80217664,80219912,80222245,80229378,80233097,80238978,80239439,80251799,80252201,80253574,80254570,80255185,80256460,80258002,80262093,80265210,80266616,80267327,80270154,80271810,80278275,80279166,80296961,80302783,80305695,80310727,80313632,80314331,80318713,80320700,80323840,80328744,80329119,80333078,80336140,80336555,80336820,80337004,80339264,80342162,80352436,80353510,80355948,80356520,80356914,80358349,80358775,80358900,80366637,80367739,80368309,80370689,80372064,80377202,80379079	0.777778
right_atrium_auricular_region_female_adult_53_years	chr1	179118587	179118610	179118609	-	RAMPAGE_only	4	4	9	0.363348	2.750000	chr1	179118593	179118709	LINE|RTE-BovB|MamRTE1	-	chr1	179107717	179143044	ABL2|ENST00000504405.5	-	179107717,179109207,179110281,179112308,179114877,179117331,179118586,179120189,179121594,179126376,179131310,179142932	179108898,179109441,179110455,179112398,179115030,179117516,179118764,179120274,179121867,179126672,179131481,179143044	0.888889
right_atrium_auricular_region_female_adult_53_years	chr3	11225885	11225913	11225885	-	High_confidence	3	3	10	0.403720	2.947703	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.700000
right_atrium_auricular_region_female_adult_53_years	chr1	6003022	6003035	6003033	+	RAMPAGE_only	16	24	65	2.624180	4.924548	chr1	6003009	6003075	SINE|MIR|MIRc	-	chr1	5992700	6098574	KCNAB2|ENST00000378092.5	+	5992700,6040516,6072754,6073732,6082194,6085203,6087466,6089007,6090388,6094399,6095322,6095529,6096635,6097268,6098484	5992788,6040645,6072798,6073770,6082274,6085248,6087511,6089051,6090475,6094485,6095443,6095624,6096756,6097357,6098574	0.815385
right_atrium_auricular_region_female_adult_53_years	chr5	102763687	102763688	102763687	+	High_confidence	281	282	367	14.816521	6.037541	chr5	102763336	102764040	LINE|L2|L2b	-	chr5	102763677	102865912	STRG.10861.18	+	102763677,102865822	102763909,102865912	0.700272
right_atrium_auricular_region_female_adult_53_years	chr10	17216310	17216311	17216310	-	RAMPAGE_only	5	5	7	0.282604	2.584963	chr10	17216274	17216354	LTR|ERV1|HERVIP10FH-int	+	chr10	17214238	17226898	VIM-AS1|ENST00000437232.5	-	17214238,17216166,17217601,17226855	17215364,17216274,17217675,17226898	0.857143
right_atrium_auricular_region_female_adult_53_years	chr12	47753879	47753921	47753920	+	RAMPAGE_only	3	3	13	0.524836	3.418296	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47758577	47780307	SLC48A1|ENST00000547002.5	+	47758577,47760215,47772169,47779027,47780144	47758660,47760401,47772320,47779195,47780307	0.538462
right_atrium_auricular_region_female_adult_53_years	chr15	91408715	91408727	91408726	+	High_confidence	3	4	9	0.363348	2.750000	chr15	91408656	91408747	SINE|MIR|MIRc	-	chr15	91408707	91605211	CRAT37|ENST00000555947.5	+	91408707,91473220,91604876	91408841,91473316,91605211	0.555556
right_atrium_auricular_region_female_adult_53_years	chr22	42644615	42644626	42644615	-	High_confidence	5	5	18	0.726696	3.947703	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	1.000000
right_atrium_auricular_region_female_adult_53_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	33	34	76	3.068271	4.542182	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.960526
right_atrium_auricular_region_female_adult_53_years	chr7	131510310	131510330	131510329	-	High_confidence	13	14	21	0.847812	3.975418	chr7	131510213	131510511	SINE|Alu|AluSx3	+	chr7	131509068	131510898	PODXL|ENST00000482581.1	-	131509068,131510827	131509585,131510898	0.809524
right_atrium_auricular_region_female_adult_53_years	chr1	174161426	174161474	174161450	+	RAMPAGE_only	11	11	72	2.906783	5.610694	chr1	174161256	174161539	SINE|Alu|AluSp	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.916667
right_atrium_auricular_region_female_adult_53_years	chr8	102929982	102929990	102929989	+	High_confidence	3	3	7	0.282604	2.584963	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.714286
right_atrium_auricular_region_female_adult_53_years	chrX	73837484	73837503	73837502	-	RAMPAGE_only	3	4	9	0.363348	2.750000	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.888889
right_atrium_auricular_region_female_adult_53_years	chr6	36914642	36914691	36914686	+	RAMPAGE_only	4	4	13	0.524836	3.418296	chr6	36914707	36914996	SINE|Alu|AluSz6	+	chr6	36885863	36928964	C6orf89|NM_152734.3	+	36885863,36899425,36902220,36914283,36914553,36916444,36919577,36923346	36886028,36899633,36902434,36914435,36914693,36916574,36919701,36928964	0.923077
right_atrium_auricular_region_female_adult_53_years	chr5	83096150	83096177	83096152	+	RAMPAGE_only	24	34	72	2.906783	5.400432	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	0.875000
right_atrium_auricular_region_female_adult_53_years	chr6	30819894	30819909	30819894	+	High_confidence	7	8	22	0.888184	3.880180	chr6	30819780	30820208	LINE|L2|L2	-	chr6	30819892	30870922	STRG.12336.1	+	30819892,30870699	30820088,30870922	0.818182
right_atrium_auricular_region_female_adult_53_years	chr17	29667577	29667658	29667657	-	RAMPAGE_only	4	4	27	1.090044	4.504706	chr17	29667384	29667678	DNA|hAT-Charlie|MER1B	+	chr17	29630799	29761390	STRG.29262.3	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677741,29684684,29695523,29703062,29761390	0.666667
right_atrium_auricular_region_female_adult_53_years	chr4	74449135	74449136	74449135	+	RAMPAGE_only	6	6	7	0.282604	2.584963	chr4	74449070	74449168	LINE|L1|L1MEf	+	chr4	74445133	74455009	AREG|ENST00000395748.7	+	74445133,74446533,74449046,74450379,74452543,74454758	74445406,74446782,74449248,74450532,74452655,74455009	0.857143
right_atrium_auricular_region_female_adult_53_years	chr13	113187444	113187464	113187444	-	High_confidence	4	4	9	0.363348	2.500000	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.777778
right_atrium_auricular_region_female_adult_53_years	chr6	138833765	138833796	138833765	-	High_confidence	3	3	13	0.524836	3.392747	chr6	138833577	138833832	SINE|Alu|AluSx	+	chr6	138795971	138833981	STRG.13534.1	-	138795971,138796449,138797416,138807001,138825094,138833474	138796022,138796605,138797516,138807066,138825579,138833981	0.538462
right_atrium_auricular_region_female_adult_53_years	chr12	9065161	9065174	9065173	+	High_confidence	5	5	24	0.968928	4.349649	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.541667
right_atrium_auricular_region_female_adult_53_years	chr22	50576060	50576061	50576060	-	High_confidence	7	8	10	0.403720	3.169925	chr22	50576043	50576136	LINE|RTE-BovB|MamRTE1	-	chr22	50572874	50576064	CPT1B|ENST00000423069.1	-	50572874,50573519,50573807,50574334,50574492,50576034	50573060,50573715,50573921,50574419,50574600,50576064	0.700000
right_atrium_auricular_region_female_adult_53_years	chr2	177499679	177499707	177499706	+	RAMPAGE_only	3	3	7	0.282604	2.584963	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.714286
right_atrium_auricular_region_female_adult_53_years	chr2	182030747	182030774	182030773	+	High_confidence	14	14	36	1.453392	4.513646	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.888889
right_atrium_auricular_region_female_adult_53_years	chr8	144106415	144106463	144106422	+	RAMPAGE_only	3	4	19	0.767068	3.531631	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144104511	144107611	MAF1|ENST00000534585.5	+	144104511,144105639,144105868,144106075,144106342,144106834,144107087	144104858,144105766,144105997,144106241,144106674,144106963,144107611	1.000000
right_atrium_auricular_region_female_adult_53_years	chr9	128921946	128921961	128921946	+	High_confidence	4	6	11	0.444092	3.095795	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	1.000000
right_atrium_auricular_region_female_adult_53_years	chr15	38004720	38004725	38004724	+	High_confidence	2	3	8	0.322976	2.807355	chr15	38003252	38004953	LINE|L1|L1M1	-	chr15	38004745	38025018	LINC02345|ENST00000557883.2	+	38004745,38020191,38024680	38004832,38020532,38025018	0.750000
right_atrium_auricular_region_female_adult_53_years	chr10	27121399	27121426	27121399	-	RAMPAGE_only	7	7	26	1.049672	2.773661	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	0.961538
right_atrium_auricular_region_female_adult_53_years	chr16	23595453	23595480	23595477	-	High_confidence	7	7	33	1.332276	4.453881	chr16	23595357	23595584	DNA|TcMar-Tigger|MER8	-	chr16	23581013	23596277	NDUFAB1|ENST00000562133.5	-	23581013,23582275,23585335,23596122	23581173,23582375,23585423,23596277	0.939394
right_atrium_auricular_region_female_adult_53_years	chr11	107719695	107719696	107719695	-	High_confidence	28	28	40	1.614880	4.404260	chr11	107719646	107719884	LTR|Gypsy?|LTR88c	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.925000
right_atrium_auricular_region_female_adult_53_years	chr19	12800915	12801045	12800915	-	High_confidence	11	11	102	4.117943	5.536999	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.970588
right_atrium_auricular_region_female_adult_53_years	chr6	26474335	26474346	26474345	+	RAMPAGE_only	5	6	14	0.565208	3.324863	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.857143
right_atrium_auricular_region_female_adult_53_years	chr2	26268570	26268582	26268572	+	RAMPAGE_only	2	3	8	0.322976	2.521641	chr2	26268173	26268864	LINE|L1|L1MD3	+	chr2	26261020	26290464	HADHB|ENST00000545822.2	+	26261020,26263379,26269952,26273650,26277072,26278613,26279134,26279993,26282844,26283003,26284116,26284882,26285406,26289917	26261063,26263479,26269997,26273750,26277160,26278801,26279315,26280115,26282924,26283051,26284204,26284957,26285571,26290464	0.750000
right_atrium_auricular_region_female_adult_53_years	chr2	86482561	86482681	86482577	+	RAMPAGE_only	8	8	46	1.857112	4.387374	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.913043
right_atrium_auricular_region_female_adult_53_years	chr7	80524846	80524860	80524846	+	RAMPAGE_only	2	3	6	0.242232	2.584963	chr7	80524761	80524908	LTR|ERV1|LTR38B	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.833333
right_atrium_auricular_region_female_adult_53_years	chr19	571752	571771	571752	-	High_confidence	3	3	9	0.363348	2.750000	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.888889
right_atrium_auricular_region_female_adult_53_years	chr9	122657443	122657452	122657443	-	RAMPAGE_only	3	4	8	0.322976	3.000000	chr9	122657250	122657457	SINE|MIR|MIR	-	chr9	122567116	122583384	OR1L8|ENST00000641027.1	-	122567116,122572779,122576765,122578323,122583320	122568689,122572908,122576901,122578445,122583384	0.625000
right_atrium_auricular_region_female_adult_53_years	chr2	201122589	201122596	201122589	+	High_confidence	12	13	22	0.888184	3.984184	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201122476	201130053	CFLAR|ENST00000425030.1	+	201122476,201129728	201122747,201130053	0.545455
right_atrium_auricular_region_female_adult_53_years	chr19	48727420	48727421	48727420	-	RAMPAGE_only	6	6	8	0.322976	2.750000	chr19	48727220	48727380	SINE|MIR|MIR3	-	chr19	48720586	48725581	RASIP1|ENST00000601530.1	-	48720586,48721853,48724336,48724716	48720997,48722001,48724509,48725581	0.500000
right_atrium_auricular_region_female_adult_53_years	chr8	107362995	107363040	107363039	-	RAMPAGE_only	5	5	20	0.807440	3.921928	chr8	107363039	107363288	SINE|MIR|MIRc	+	chr8	107251511	107336522	ANGPT1|ENST00000520734.5	-	107251511,107264220,107284681,107293935,107303239,107321895,107336149,107336383	107252015,107264351,107284848,107294037,107303367,107322128,107336271,107336522	0.750000
right_atrium_auricular_region_female_adult_53_years	chr4	118836008	118836024	118836008	-	High_confidence	4	4	10	0.403720	2.721928	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	35538533	35538545	35538538	-	RAMPAGE_only	8	8	18	0.726696	3.725481	chr1	35538308	35538616	SINE|Alu|AluSx	+	chr1	35451634	35554987	KIAA0319L|ENST00000440579.5	-	35451634,35453556,35454361,35456012,35460304,35462620,35466607,35470862,35474804,35478965,35506611,35554349,35554899	35451776,35453689,35454485,35456241,35460437,35462713,35466695,35470960,35474906,35479212,35507135,35554519,35554987	0.944444
right_atrium_auricular_region_female_adult_53_years	chr8	93017667	93017734	93017733	-	High_confidence	43	44	275	11.102298	6.959170	chr8	93017253	93017736	LTR|ERVL|LTR79	-	chr8	92885319	93017673	TRIQK|ENST00000520686.5	-	92885319,92891988,92916928,92954405,93017608	92886735,92892074,92917010,92954564,93017673	0.789091
right_atrium_auricular_region_female_adult_53_years	chr12	55710213	55710255	55710213	+	High_confidence	4	4	14	0.565208	3.700440	chr12	55710078	55710380	SINE|Alu|AluSx1	+	chr12	55709958	55719670	STRG.23147.4	+	55709958,55715989,55716932,55719090,55719498	55710402,55716196,55717005,55719223,55719670	0.714286
right_atrium_auricular_region_female_adult_53_years	chr8	86417214	86417236	86417235	+	High_confidence	19	19	47	1.897484	5.277613	chr8	86417268	86417372	DNA|hAT-Charlie|MER58D	+	chr8	86417222	86431665	WWP1|ENST00000521079.1	+	86417222,86425222,86427642,86430696,86431405,86431614	86417279,86425318,86427817,86430751,86431490,86431665	0.595745
right_atrium_auricular_region_female_adult_53_years	chr11	118700419	118700451	118700427	+	High_confidence	2	2	12	0.484464	3.459432	chr11	118700359	118700777	LTR|ERVL-MaLR|MLT1H	+	chr11	118700426	118708848	AP002954.1|ENST00000646572.1	+	118700426,118704607,118708381	118700643,118704838,118708848	0.833333
right_atrium_auricular_region_female_adult_53_years	chr2	87469949	87469950	87469949	+	High_confidence	4	6	6	0.242232	2.584963	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87469949	87521413	CYTOR|ENST00000437561.1	+	87469949,87470149,87521206	87470042,87470304,87521413	0.500000
right_atrium_auricular_region_female_adult_53_years	chr4	119145824	119145830	119145829	+	RAMPAGE_only	18	21	34	1.372648	4.597276	chr4	119145674	119147458	LINE|L1|L1MD1	-	chr4	119135783	119187789	MYOZ2|ENST00000307128.5	+	119135783,119136511,119150871,119158021,119164210,119185965	119135982,119136601,119151041,119158151,119164394,119187789	0.911765
right_atrium_auricular_region_female_adult_53_years	chr17	59651214	59651287	59651214	+	RAMPAGE_only	5	5	24	0.968928	4.088779	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.958333
right_atrium_auricular_region_female_adult_53_years	chr19	48868595	48868617	48868613	-	High_confidence	374	436	1744	70.408755	7.704529	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.978784
right_atrium_auricular_region_female_adult_53_years	chr1	16048837	16048862	16048861	+	High_confidence	6	6	12	0.484464	3.418296	chr1	16048792	16048900	SINE|MIR|MIR	+	chr1	16048788	16057308	CLCNKB|ENST00000375667.7	+	16048788,16049617,16049814,16050515,16050874,16051477,16051709,16052197,16053638,16055434,16055677,16056421,16056868	16049245,16049702,16049916,16050600,16051048,16051547,16051820,16052411,16053772,16055523,16055758,16056508,16057308	1.000000
right_atrium_auricular_region_female_adult_53_years	chr19	35164180	35164245	35164235	+	High_confidence	10	12	32	1.291904	3.676109	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	11984765	11984766	11984765	+	RAMPAGE_only	206	219	286	11.546390	6.980159	chr1	11984495	11985279	LTR|ERVL|MER21A	+	chr1	11981991	12013508	STRG.440.2	+	11981991,11982522,11989164,11992554,11996155,11997296,11998769,11998987,12001400,12001768,12001981,12003991,12004508,12004824,12005710,12006537,12007052,12009591,12011495	11982114,11982590,11989343,11992690,11996318,11997421,11998878,11999095,12001554,12001836,12002103,12004118,12004613,12004927,12005931,12006693,12007249,12009726,12013508	0.751748
right_atrium_auricular_region_female_adult_53_years	chrX	44951147	44951148	44951147	+	RAMPAGE_only	16	19	20	0.807440	4.037401	chrX	44950752	44951268	LTR|ERV1|LTR10D	+	chrX	44873551	45111411	KDM6A|ENST00000621147.4	+	44873551,44873923,44961283,44974665,45010960,45020609,45034930,45037654,45053828,45059005,45059246,45061323,45063421,45069578,45076696,45078399,45107456,45110078,45111381	44873712,44873987,44961392,44974715,45011019,45020730,45034985,45037689,45053955,45059104,45059466,45061419,45063817,45070357,45076826,45078493,45107536,45110249,45111411	0.550000
right_atrium_auricular_region_female_adult_53_years	chr1	201360518	201360553	201360552	-	RAMPAGE_only	2	2	7	0.282604	2.807355	chr1	201360361	201360542	SINE|MIR|MIR	-	chr1	201359007	201363350	TNNT2|ENST00000476888.5	-	201359007,201359622,201361278,201361950,201362385,201363295	201359255,201359663,201361369,201362022,201362394,201363350	0.714286
right_atrium_auricular_region_female_adult_53_years	chr12	70550321	70550322	70550321	+	High_confidence	145	145	159	6.419147	6.537767	chr12	70549928	70550495	LINE|L2|L2c	-	chr12	70550202	70571409	STRG.23455.1	+	70550202,70557979,70560604,70569497	70550447,70558078,70560996,70571409	0.874214
right_atrium_auricular_region_female_adult_53_years	chr15	93863018	93863034	93863033	+	High_confidence	6	6	15	0.605580	3.467720	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.933333
right_atrium_auricular_region_female_adult_53_years	chr19	34556792	34556809	34556808	+	RAMPAGE_only	4	6	11	0.444092	3.321928	chr19	34555848	34559131	LTR|ERV1|HERVS71-int	-	chr19	34645379	34646838	AC020910.6|ENST00000623084.1	+	34645379	34646838	0.636364
right_atrium_auricular_region_female_adult_53_years	chr2	174118274	174118294	174118293	-	RAMPAGE_only	3	3	8	0.322976	2.807355	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174080907	174123670	OLA1|ENST00000462000.1	-	174080907,174081923,174123179,174123594	174081248,174082064,174123277,174123670	0.625000
right_atrium_auricular_region_female_adult_53_years	chr9	110170613	110171499	110170695	+	RAMPAGE_only	35	36	999	40.331620	6.882282	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	0.998999
right_atrium_auricular_region_female_adult_53_years	chr20	3795822	3795827	3795822	+	High_confidence	3	3	7	0.282604	2.807355	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	1.000000
right_atrium_auricular_region_female_adult_53_years	chr8	85378112	85378113	85378112	-	High_confidence	67	68	68	2.745295	4.573226	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.985294
right_atrium_auricular_region_female_adult_53_years	chr20	49513081	49513094	49513092	-	RAMPAGE_only	2	3	7	0.282604	2.584963	chr20	49512857	49513046	SINE|MIR|MIRb	-	chr20	49503873	49568146	PTGIS|ENST00000244043.4	-	49503873,49511027,49513079,49514226,49524057,49539569,49544304,49547840,49550065,49568042	49508064,49511179,49513261,49514395,49524239,49539721,49544448,49548019,49550189,49568146	0.857143
right_atrium_auricular_region_female_adult_53_years	chr9	121340703	121340737	121340708	-	RAMPAGE_only	3	3	12	0.484464	3.277613	chr9	121340456	121340767	SINE|Alu|AluSq2	+	chr9	121339076	121370205	STOM|ENST00000286713.6	-	121339076,121348014,121349119,121353219,121354600,121356052,121370126	121341408,121348149,121349323,121353302,121354673,121356156,121370205	0.916667
right_atrium_auricular_region_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	153	159	212	8.558862	6.618786	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.948113
right_atrium_auricular_region_female_adult_53_years	chr19	47780107	47780108	47780107	+	High_confidence	26	33	38	1.534136	4.683542	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.894737
right_atrium_auricular_region_female_adult_53_years	chr9	117252725	117252736	117252725	+	High_confidence	13	13	27	1.090044	4.469670	chr9	117252607	117252810	SINE|MIR|MIRb	-	chr9	117252744	117260014	STRG.18505.1	+	117252744,117257617	117252916,117260014	0.888889
right_atrium_auricular_region_female_adult_53_years	chr1	166850210	166850243	166850227	+	RAMPAGE_only	5	5	19	0.767068	3.947703	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.947368
right_atrium_auricular_region_female_adult_53_years	chr12	49013477	49013482	49013477	-	RAMPAGE_only	4	6	11	0.444092	3.095795	chr12	49013243	49013543	SINE|Alu|AluJb	-	chr12	49004571	49018415	PRKAG1|ENST00000552463.5	-	49004571,49004963,49005119,49005305,49005461,49005742,49013061,49016606,49018333	49004633,49005018,49005165,49005364,49005543,49005852,49013110,49016839,49018415	0.818182
right_atrium_auricular_region_female_adult_53_years	chr11	64242588	64242620	64242619	+	High_confidence	32	32	130	5.248359	5.365338	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.984615
right_atrium_auricular_region_female_adult_53_years	chr17	41871799	41871825	41871819	-	RAMPAGE_only	4	4	13	0.524836	2.855389	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.846154
right_atrium_auricular_region_female_adult_53_years	chr16	28608335	28608363	28608335	-	High_confidence	2	2	6	0.242232	2.584963	chr16	28608009	28608286	SINE|Alu|AluSp	-	chr16	28605195	28608920	SULT1A1|ENST00000569554.5	-	28605195,28606055,28606760,28606950,28608290,28608477,28608707	28605933,28606236,28606855,28607077,28608388,28608603,28608920	1.000000
right_atrium_auricular_region_female_adult_53_years	chr12	69592091	69592147	69592146	+	RAMPAGE_only	3	3	13	0.524836	3.251629	chr12	69592196	69592505	SINE|Alu|AluSp	+	chr12	69585681	69601577	CCT2|NM_001198842.1	+	69585681,69586269,69586752,69587504,69587929,69588149,69589484,69592058,69592975,69593509,69597155,69597637,69597967,69598321,69599862,69601294	69586009,69586344,69586818,69587616,69588006,69588262,69589687,69592159,69593103,69593613,69597275,69597766,69598071,69598421,69600004,69601577	0.923077
right_atrium_auricular_region_female_adult_53_years	chr17	2667148	2667196	2667195	+	High_confidence	7	8	25	1.009300	4.323856	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	1.000000
right_atrium_auricular_region_female_adult_53_years	chr8	110202889	110202983	110202942	+	High_confidence	8	8	45	1.816740	4.552638	chr8	110201761	110203133	LTR|ERV1|LTR12C	-	chr8	110202770	110263114	STRG.16812.1	+	110202770,110263014	110203134,110263114	0.555556
right_atrium_auricular_region_female_adult_53_years	chr20	64265449	64265525	64265484	+	High_confidence	12	13	102	4.117943	5.818563	chr20	64265443	64265603	SINE|MIR|MIR	-	chr20	64265511	64273545	PCMTD2|ENST00000609818.1	+	64265511,64267886,64273220	64265613,64268010,64273545	0.882353
right_atrium_auricular_region_female_adult_53_years	chr4	88595600	88595605	88595604	+	RAMPAGE_only	3	5	11	0.444092	2.550341	chr4	88595552	88595664	SINE|MIR|MIR3	+	chr4	88593377	88653088	HERC3|ENST00000452979.5	+	88593377,88595556,88605794,88649839,88652011,88652868	88593494,88595614,88606049,88649999,88652088,88653088	0.909091
right_atrium_auricular_region_female_adult_53_years	chrX	63661154	63661164	63661163	-	High_confidence	5	5	13	0.524836	3.700440	chrX	63660963	63661162	SINE|MIR|MIR	-	chrX	63637984	63661852	STRG.35545.13	-	63637984,63643979,63655493,63661722	63638209,63644048,63655737,63661852	0.769231
right_atrium_auricular_region_female_adult_53_years	chr4	86453195	86453203	86453202	-	High_confidence	5	5	15	0.605580	3.235926	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.933333
right_atrium_auricular_region_female_adult_53_years	chr12	119186451	119186452	119186451	+	RAMPAGE_only	6	6	6	0.242232	2.584963	chr12	119186410	119186584	SINE|MIR|MIR1_Amn	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.500000
right_atrium_auricular_region_female_adult_53_years	chr15	92591523	92591552	92591551	+	RAMPAGE_only	10	12	22	0.888184	3.975418	chr15	92591487	92591582	LINE|RTE-X|L4_A_Mam	+	chr15	92598557	92600537	AC091544.2|ENST00000625146.1	+	92598557	92600537	0.818182
right_atrium_auricular_region_female_adult_53_years	chr9	19126400	19126417	19126416	-	RAMPAGE_only	8	9	17	0.686324	3.969816	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19115769	19127576	PLIN2|ENST00000276914.6	-	19115769,19118320,19119649,19120879,19123564,19126113,19126396,19127418	19116649,19118455,19119831,19121165,19123647,19126309,19126448,19127576	1.000000
right_atrium_auricular_region_female_adult_53_years	chr2	68872582	68872620	68872582	-	RAMPAGE_only	34	39	64	2.583808	5.413633	chr2	68872511	68872953	LTR|ERVL|MLT2A1	+	chr2	68865480	68871517	BMP10|ENST00000295379.1	-	68865480,68871024	68866571,68871517	0.968750
right_atrium_auricular_region_female_adult_53_years	chr3	42719316	42719329	42719316	+	RAMPAGE_only	2	2	8	0.322976	2.500000	chr3	42718677	42719381	LTR|ERV1|MER41-int	+	chr3	42721526	42723134	STRG.6594.1	+	42721526,42722148	42721650,42723134	0.750000
right_atrium_auricular_region_female_adult_53_years	chr2	48568986	48568988	48568987	+	High_confidence	7	15	15	0.605580	3.773557	chr2	48569019	48569241	SINE|MIR|MIRb	+	chr2	48569019	48679609	STON1-GTF2A1L|NM_172311.2	+	48569019,48580586,48591652,48620850,48621166,48642401,48645032,48646452,48669721,48671590,48679334	48569086,48582563,48591855,48620952,48621290,48642457,48645117,48647042,48669982,48671680,48679609	1.000000
right_atrium_auricular_region_female_adult_53_years	chr13	32527410	32527470	32527410	-	RAMPAGE_only	5	5	36	1.453392	4.771143	chr13	32527156	32527383	SINE|MIR|MIRc	-	chr13	32516893	32525579	N4BP2L2|ENST00000503814.1	-	32516893,32521372	32518003,32525579	0.750000
right_atrium_auricular_region_female_adult_53_years	chr16	2759995	2759996	2759995	+	High_confidence	7	7	8	0.322976	2.807355	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	0.875000
right_atrium_auricular_region_female_adult_53_years	chrX	48683361	48683363	48683362	+	High_confidence	25	40	40	1.614880	4.304257	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.975000
right_atrium_auricular_region_female_adult_53_years	chr2	40453177	40453241	40453240	-	RAMPAGE_only	2	2	10	0.403720	2.947703	chr2	40453124	40453283	DNA|hAT-Charlie|MER5A	-	chr2	40097269	40452069	SLC8A1|ENST00000406785.6	-	40097269,40139400,40160764,40164853,40174824,40177751,40428472,40451903	40115629,40139676,40160864,40164984,40174842,40177855,40430304,40452069	0.900000
right_atrium_auricular_region_female_adult_53_years	chr13	52661494	52661531	52661530	+	RAMPAGE_only	4	4	16	0.645952	3.750000	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	205512274	205512317	205512316	+	High_confidence	20	20	45	1.816740	4.990105	chr1	205512088	205512401	LINE|L2|L2	-	chr1	205512289	205524355	STRG.2945.13	+	205512289,205523146,205523482,205524231	205512416,205523297,205523625,205524355	0.688889
right_atrium_auricular_region_female_adult_53_years	chr1	183590889	183590911	183590910	-	High_confidence	5	5	11	0.444092	3.321928	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.818182
right_atrium_auricular_region_female_adult_53_years	chr13	20832902	20832916	20832915	-	RAMPAGE_only	9	9	25	1.009300	4.053661	chr13	20832849	20832905	SINE|tRNA|LFSINE_Vert	-	chr13	20777407	20902747	STRG.24184.1	-	20777407,20786964,20787480,20788485,20790461,20796075,20796763,20799164,20800155,20800830,20807456,20808435,20809082,20809790,20821703,20822131,20827066,20842894,20843769,20855626,20862716,20862968,20868595,20902669	20783919,20787057,20787598,20788616,20790580,20796256,20797057,20799339,20800325,20800990,20807634,20808581,20809225,20809967,20821878,20822289,20827179,20843048,20843886,20855765,20862858,20863123,20868701,20902747	0.960000
right_atrium_auricular_region_female_adult_53_years	chr5	997302	997328	997318	-	High_confidence	90	93	231	9.325930	6.307868	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.956710
right_atrium_auricular_region_female_adult_53_years	chr6	127330839	127330938	127330937	-	High_confidence	6	6	32	1.291904	4.319903	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.875000
right_atrium_auricular_region_female_adult_53_years	chr15	57468896	57468903	57468896	+	RAMPAGE_only	12	13	20	0.807440	3.471354	chr15	57468704	57469072	LTR|ERVL-MaLR|THE1B	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.950000
right_atrium_auricular_region_female_adult_53_years	chr12	110440313	110440320	110440313	-	RAMPAGE_only	3	4	8	0.322976	2.807355	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.875000
right_atrium_auricular_region_female_adult_53_years	chr12	15001805	15001838	15001810	+	High_confidence	5	5	15	0.605580	3.378783	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.866667
right_atrium_auricular_region_female_adult_53_years	chr1	201365868	201365875	201365874	-	RAMPAGE_only	6	6	16	0.645952	3.506891	chr1	201365815	201366035	SINE|MIR|MIRc	-	chr1	201360826	201366966	TNNT2|ENST00000515042.5	-	201360826,201361912,201362385,201363295,201364297,201365190,201365609,201366837	201361369,201362022,201362394,201363406,201364375,201365307,201365670,201366966	0.875000
right_atrium_auricular_region_female_adult_53_years	chr4	21544661	21544692	21544670	-	High_confidence	4	5	14	0.565208	3.521641	chr4	21544311	21544682	LTR|ERVL-MaLR|MLT1E2	-	chr4	20728615	21544656	KCNIP4|NM_001035004.1	-	20728615,20732005,20732680,20734627,20749661,20758820,20850542,21544389	20730129,20732068,20732785,20734735,20749732,20758890,20850667,21544656	0.571429
right_atrium_auricular_region_female_adult_53_years	chr19	51027648	51027668	51027667	-	High_confidence	9	9	20	0.807440	3.932138	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.900000
right_atrium_auricular_region_female_adult_53_years	chr1	196715603	196715618	196715603	+	RAMPAGE_only	6	6	16	0.645952	3.640224	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.937500
right_atrium_auricular_region_female_adult_53_years	chr14	102947722	102947755	102947722	-	RAMPAGE_only	2	2	12	0.484464	3.459432	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.666667
right_atrium_auricular_region_female_adult_53_years	chr9	20658607	20658624	20658607	+	High_confidence	3	4	10	0.403720	2.921928	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658336	20770112	STRG.17383.6	+	20658336,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.900000
right_atrium_auricular_region_female_adult_53_years	chr16	72014385	72014451	72014418	+	High_confidence	221	221	743	29.996390	7.111281	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.707941
right_atrium_auricular_region_female_adult_53_years	chr12	91179325	91179326	91179325	-	High_confidence	6	6	8	0.322976	3.000000	chr12	91179305	91179397	SINE|MIR|MIRb	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.625000
right_atrium_auricular_region_female_adult_53_years	chr10	45000453	45000515	45000503	+	High_confidence	26	27	97	3.916083	5.594492	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.989691
right_atrium_auricular_region_female_adult_53_years	chr1	147173219	147173226	147173225	+	High_confidence	3	5	9	0.363348	2.750000	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.777778
right_atrium_auricular_region_female_adult_53_years	chr12	5993863	5993898	5993863	-	RAMPAGE_only	6	6	29	1.170788	4.606739	chr12	5993700	5993817	SINE|MIR|MIRc	-	chr12	5948873	6124675	VWF|ENST00000261405.9	-	5948873,5949785,5951843,5952390,5953495,5967485,5968126,5969210,5971598,5976110,5981785,5983149,5985044,5985562,5991818,5993861,5994414,5996001,6011616,6012086,6013480,6016088,6016515,6016753,6018364,6021899,6022739,6023630,6025579,6025905,6029341,6031443,6034687,6036387,6044290,6046722,6052542,6056856,6057848,6062953,6064245,6065136,6071296,6072330,6073618,6075334,6095459,6110373,6110865,6121173,6123141,6124420	5949203,5949883,5951883,5952519,5953594,5967602,5968167,5969391,5971709,5976260,5981991,5983254,5985119,5985665,5992018,5994203,5994607,5996222,6011794,6012130,6013645,6016232,6016656,6016870,6019743,6022035,6022898,6023787,6025693,6026046,6029488,6031578,6034826,6036491,6044451,6046817,6052783,6057072,6058044,6063054,6064384,6065273,6071343,6072442,6073741,6075551,6095584,6110582,6110968,6121338,6123196,6124675	0.896552
right_atrium_auricular_region_female_adult_53_years	chr9	121281844	121281845	121281844	+	RAMPAGE_only	5	5	8	0.322976	2.521641	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.750000
right_atrium_auricular_region_female_adult_53_years	chr10	90934954	90934982	90934978	+	High_confidence	17	19	47	1.897484	5.341823	chr10	90934783	90935137	LTR|ERVL-MaLR|THE1A	+	chr10	90934986	90946239	STRG.19968.1	+	90934986,90939562	90935061,90946239	0.638298
right_atrium_auricular_region_female_adult_53_years	chr1	184974910	184974926	184974910	-	High_confidence	5	5	11	0.444092	3.321928	chr1	184974824	184974995	DNA|hAT-Charlie|MER5A	+	chr1	184791024	184974586	FAM129A|NM_052966.3	-	184791024,184798078,184803584,184805945,184808073,184818637,184823166,184823637,184831846,184884632,184890107,184894074,184899178,184974301	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184823742,184831962,184884800,184890222,184894206,184899309,184974586	0.727273
right_atrium_auricular_region_female_adult_53_years	chr3	14181568	14181575	14181568	+	RAMPAGE_only	3	3	9	0.363348	2.947703	chr3	14181325	14181571	SINE|MIR|MIR	-	chr3	14178727	14198369	LSM3|NM_014463.2	+	14178727,14181559,14183936,14198035	14178881,14181670,14184032,14198369	1.000000
right_atrium_auricular_region_female_adult_53_years	chr4	122700441	122700442	122700441	+	High_confidence	250	253	325	13.120898	7.098611	chr4	122700197	122700669	LTR|ERVL|MER70A	+	chr4	122700443	122745750	STRG.9421.1	+	122700443,122741882	122700566,122745750	0.596923
right_atrium_auricular_region_female_adult_53_years	chr2	68872665	68872720	68872665	-	RAMPAGE_only	16	19	39	1.574508	5.090033	chr2	68872511	68872953	LTR|ERVL|MLT2A1	+	chr2	68865480	68871517	BMP10|ENST00000295379.1	-	68865480,68871024	68866571,68871517	0.846154
right_atrium_auricular_region_female_adult_53_years	chr5	79481692	79481791	79481790	-	RAMPAGE_only	11	11	66	2.664551	5.301674	chr5	79481262	79481938	LINE|L1|L1MEc	+	chr5	79375929	79512794	HOMER1|ENST00000508576.5	-	79375929,79439009,79447052,79450989,79456861,79512769	79376197,79439149,79447145,79451121,79457018,79512794	0.863636
right_atrium_auricular_region_female_adult_53_years	chr15	24983644	24983651	24983644	+	RAMPAGE_only	6	6	18	0.726696	3.503258	chr15	24983509	24983805	SINE|Alu|AluSx	+	chr15	24981993	25000276	STRG.26081.15	+	24981993,24998969,25000244	24998486,24999078,25000276	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	33838228	33838261	33838256	+	RAMPAGE_only	4	4	20	0.807440	3.784184	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	1.000000
right_atrium_auricular_region_female_adult_53_years	chr5	109383422	109383463	109383462	-	High_confidence	11	11	33	1.332276	4.513795	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
right_atrium_auricular_region_female_adult_53_years	chr9	38949896	38949909	38949908	+	High_confidence	3	3	10	0.403720	3.169925	chr9	38949604	38949969	LTR|ERV1|LTR38B	+	chr9	38949739	38998508	STRG.17583.1	+	38949739,38950328,38964939,38997942	38949849,38950512,38965093,38998508	0.900000
right_atrium_auricular_region_female_adult_53_years	chr10	67076929	67076933	67076929	-	RAMPAGE_only	2	2	6	0.242232	2.584963	chr10	67076859	67077820	LINE|L2|L2a	+	chr10	66766154	67180443	CTNNA3|ENST00000494580.1	-	66766154,66775443,67180316	66766416,66775524,67180443	0.666667
right_atrium_auricular_region_female_adult_53_years	chr12	55710335	55710366	55710358	+	High_confidence	2	4	12	0.484464	2.751629	chr12	55710078	55710380	SINE|Alu|AluSx1	+	chr12	55709958	55719670	STRG.23147.4	+	55709958,55715989,55716932,55719090,55719498	55710402,55716196,55717005,55719223,55719670	0.916667
right_atrium_auricular_region_female_adult_53_years	chr3	194488594	194488595	194488594	+	RAMPAGE_only	11	11	11	0.444092	3.277613	chr3	194488306	194489162	LINE|L2|L2	+	chr3	194487453	194518279	LINC00884|ENST00000448892.1	+	194487453,194497937,194517070	194488726,194498135,194518279	0.818182
right_atrium_auricular_region_female_adult_53_years	chr2	61920995	61921034	61920995	+	RAMPAGE_only	2	2	10	0.403720	3.121928	chr2	61920981	61921269	SINE|Alu|AluSz	-	chr2	61905757	62000847	COMMD1|ENST00000455659.1	+	61905757,61915681,61918571,62000700	61905858,61915773,61918619,62000847	0.600000
right_atrium_auricular_region_female_adult_53_years	chr4	1241435	1241458	1241435	-	RAMPAGE_only	4	4	15	0.605580	3.006239	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1245076	STRG.8364.11	-	1225437,1228198,1238182,1241324,1241650	1225566,1228343,1238337,1241519,1245076	1.000000
right_atrium_auricular_region_female_adult_53_years	chr19	3062922	3062983	3062982	-	High_confidence	74	75	419	16.915865	6.511349	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.992840
right_atrium_auricular_region_female_adult_53_years	chr1	147517874	147517875	147517874	-	High_confidence	19	20	21	0.847812	4.247928	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147258884	147517875	LINC00624|ENST00000619867.4	-	147258884,147384667,147408589,147514337,147515520,147517442	147260976,147384863,147408689,147514448,147515676,147517875	0.857143
right_atrium_auricular_region_female_adult_53_years	chr8	18076054	18076061	18076060	-	High_confidence	99	106	172	6.943983	6.112510	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18056461	18076037	ASAH1|ENST00000637922.1	-	18056461,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18067219,18069791,18071299,18075540,18075922	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18064531,18067298,18069878,18071390,18075587,18076037	0.697674
right_atrium_auricular_region_female_adult_53_years	chr17	31128480	31128484	31128483	+	High_confidence	12	12	19	0.767068	3.461320	chr17	31128254	31128640	LINE|L1|L1PA13	-	chr17	31128457	31169964	NF1|ENST00000489712.6	+	31128457,31155982,31159009,31163185,31169890	31128507,31156126,31159093,31163376,31169964	0.684211
right_atrium_auricular_region_female_adult_53_years	chr18	42027511	42027531	42027515	+	RAMPAGE_only	4	4	12	0.484464	3.277613	chr18	42027565	42027649	DNA|hAT-Charlie|MER58B	+	chr18	42025781	42037817	PIK3C3|ENST00000590013.2	+	42025781,42027442,42029324,42033825,42037691	42025939,42027548,42029441,42033957,42037817	0.583333
right_atrium_auricular_region_female_adult_53_years	chr8	102930112	102930163	102930162	+	High_confidence	7	7	23	0.928556	3.849224	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.913043
right_atrium_auricular_region_female_adult_53_years	chr16	10428896	10428913	10428896	+	High_confidence	2	2	12	0.484464	2.845351	chr16	10428876	10429027	SINE|Alu|AluJo	-	chr16	10428900	10483638	ATF7IP2|ENST00000568027.5	+	10428900,10430610,10433524,10438100,10440363,10472109,10473478,10473922,10480878,10481835	10429016,10431455,10433649,10438235,10440462,10472183,10473534,10473989,10480964,10483638	0.916667
right_atrium_auricular_region_female_adult_53_years	chr1	153119468	153119469	153119468	-	High_confidence	148	151	166	6.701751	5.293350	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112120	153119455	STRG.2190.1	-	153112120,153119352	153112752,153119455	0.969880
right_atrium_auricular_region_female_adult_53_years	chr8	12522764	12522776	12522775	+	High_confidence	4	4	8	0.322976	2.750000	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12522586	12567269	STRG.15927.1	+	12522586,12530942,12565885	12522846,12531031,12567269	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	135965701	135965764	135965723	+	High_confidence	26	41	238	9.608534	6.284322	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.991597
right_atrium_auricular_region_female_adult_53_years	chr12	27579291	27579303	27579291	+	RAMPAGE_only	2	2	8	0.322976	2.807355	chr12	27579150	27579292	SINE|MIR|MIR3	+	chr12	27524255	27695564	PPFIBP1|ENST00000228425.10	+	27524255,27578151,27633361,27634909,27646061,27647728,27650009,27654721,27656615,27658815,27660883,27664361,27667165,27671430,27672426,27673766,27674191,27676427,27677063,27679488,27679932,27681545,27682386,27682614,27687384,27688297,27689014,27691748,27692590,27692795	27524365,27578239,27633460,27635115,27646148,27647842,27650141,27654814,27656730,27658848,27660945,27664446,27667320,27671546,27672483,27673827,27674221,27676599,27677096,27679639,27680061,27681696,27682498,27682703,27687507,27688423,27689203,27691928,27692656,27695564	0.875000
right_atrium_auricular_region_female_adult_53_years	chr8	124345093	124345094	124345093	-	RAMPAGE_only	4	4	7	0.282604	2.521641	chr8	124345029	124345428	LTR|ERV1|MER57C1	+	chr8	124306188	124372487	STRG.16882.1	-	124306188,124313964,124320085,124322104,124323320,124327353,124330747,124371853	124307447,124314061,124320191,124322147,124323375,124327421,124330792,124372487	0.571429
right_atrium_auricular_region_female_adult_53_years	chr21	29077441	29077517	29077486	+	High_confidence	6	6	18	0.726696	3.807764	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.777778
right_atrium_auricular_region_female_adult_53_years	chr18	54234966	54234972	54234966	-	RAMPAGE_only	2	2	6	0.242232	2.584963	chr18	54234703	54235088	LTR|ERVL|LTR79	-	chr18	54151600	54224788	MBD2|ENST00000256429.7	-	54151600,54159764,54164522,54166075,54188873,54204997,54224017	54155311,54159903,54164700,54166166,54189011,54205157,54224788	1.000000
right_atrium_auricular_region_female_adult_53_years	chr19	11196131	11196223	11196131	-	High_confidence	15	15	82	3.310503	5.375171	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.975610
right_atrium_auricular_region_female_adult_53_years	chr10	70324454	70324470	70324458	-	RAMPAGE_only	3	3	9	0.363348	2.750000	chr10	70324412	70324716	LTR|ERVL-MaLR|MLT1M	+	chr10	70298969	70376779	LRRC20|NM_001278213.1	-	70298969,70323862,70376451,70376728	70301508,70324030,70376596,70376779	0.888889
right_atrium_auricular_region_female_adult_53_years	chr17	4143196	4143215	4143199	+	High_confidence	151	154	325	13.120898	5.776088	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.978462
right_atrium_auricular_region_female_adult_53_years	chrX	147937561	147937596	147937574	+	RAMPAGE_only	3	3	19	0.767068	3.747413	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.36220.10	+	147940580,147943130,147944868,147945533,147948733	147940662,147943326,147945051,147945616,147950315	1.000000
right_atrium_auricular_region_female_adult_53_years	chr4	64500466	64500467	64500466	-	RAMPAGE_only	49	50	56	2.260832	5.074241	chr4	64500297	64500658	LTR|ERVL-MaLR|THE1D	-	chr4	64275256	64409468	TECRL|ENST00000507440.5	-	64275256,64281040,64281473,64289709,64299973,64305165,64309825,64314647,64322688,64328511,64375171,64409117	64277051,64281086,64281559,64289767,64300017,64305238,64309931,64314763,64322792,64328556,64375223,64409468	0.607143
right_atrium_auricular_region_female_adult_53_years	chr1	95042531	95042539	95042538	-	RAMPAGE_only	5	6	9	0.363348	2.500000	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94983549	95027203	ALG14|ENST00000507727.2	-	94983549,95027128	94983633,95027203	0.555556
right_atrium_auricular_region_female_adult_53_years	chr1	179856132	179856170	179856132	-	RAMPAGE_only	2	2	10	0.403720	2.646439	chr1	179855896	179856189	SINE|Alu|AluSz	+	chr1	179840067	179877782	STRG.2672.1	-	179840067,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877782	1.000000
right_atrium_auricular_region_female_adult_53_years	chr6	159681226	159681254	159681253	-	RAMPAGE_only	11	13	30	1.211160	4.066109	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	0.933333
right_atrium_auricular_region_female_adult_53_years	chr4	102431154	102431180	102431179	-	High_confidence	4	4	8	0.322976	2.750000	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.875000
right_atrium_auricular_region_female_adult_53_years	chr9	126958562	126958606	126958605	+	RAMPAGE_only	4	4	14	0.565208	3.664498	chr9	126958275	126959055	LINE|L1|L1MB7	-	chr9	126962224	127217445	RALGPS1|NM_001190728.1	+	126962224,126965843,126977694,127034430,127050042,127052846,127069229,127166068,127168678,127174714,127195090,127210694,127212130,127212626,127212967,127214750,127216905	126962346,126965951,126977745,127034514,127050132,127052939,127069356,127166206,127168772,127174782,127195217,127210778,127212236,127212719,127213049,127214842,127217445	0.857143
right_atrium_auricular_region_female_adult_53_years	chr7	82214035	82214042	82214035	-	RAMPAGE_only	5	5	11	0.444092	3.121928	chr7	82213847	82214213	LTR|ERVL-MaLR|MLT1A0	-	chr7	82117043	82343236	CACNA2D1|ENST00000484706.1	-	82117043,82136634,82170549,82335134,82343053	82117173,82136676,82170609,82335251,82343236	0.727273
right_atrium_auricular_region_female_adult_53_years	chr2	159754078	159754100	159754093	+	RAMPAGE_only	10	11	38	1.534136	4.683542	chr2	159753563	159755683	LINE|L2|L2c	-	chr2	159752489	159767960	MARCH7|ENST00000420397.1	+	159752489,159759225,159762879,159767283	159752571,159759335,159762993,159767960	0.578947
right_atrium_auricular_region_female_adult_53_years	chr1	184793400	184793604	184793567	-	RAMPAGE_only	68	68	394	15.906565	5.456303	chr1	184793278	184793583	SINE|Alu|AluSz	+	chr1	184791029	184974550	FAM129A|ENST00000367511.3	-	184791029,184798078,184803584,184805945,184808073,184818637,184823166,184823637,184831846,184884632,184890107,184894074,184899178,184974301	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184823742,184831962,184884800,184890222,184894206,184899309,184974550	0.992386
right_atrium_auricular_region_female_adult_53_years	chr7	141280358	141280395	141280383	+	RAMPAGE_only	2	2	9	0.363348	3.000000	chr7	141280292	141280651	LTR|ERVL-MaLR|THE1B	+	chr7	141301647	141480320	STRG.15550.2	+	141301647,141437607,141470535	141301949,141437745,141480320	0.888889
right_atrium_auricular_region_female_adult_53_years	chr1	65422500	65422501	65422500	+	RAMPAGE_only	8	8	10	0.403720	2.947703	chr1	65422070	65422538	LTR|ERVL-MaLR|MLT1C	+	chr1	65420715	65436007	LEPROT|NM_001198681.1	+	65420715,65421327,65425302,65429861,65431802	65420740,65421459,65425378,65430048,65436007	0.500000
right_atrium_auricular_region_female_adult_53_years	chr5	151669675	151669724	151669675	-	RAMPAGE_only	12	13	74	2.987527	5.023586	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.986486
right_atrium_auricular_region_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	183	183	183	7.388075	4.157289	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.961749
right_atrium_auricular_region_female_adult_53_years	chr12	68963264	68963269	68963264	-	RAMPAGE_only	9	9	16	0.645952	3.750000	chr12	68963127	68963528	LTR|ERV1|MER39B	+	chr12	68957376	68957677	PRELID2P1|ENST00000552837.1	-	68957376	68957677	0.500000
right_atrium_auricular_region_female_adult_53_years	chr6	16277892	16277929	16277904	+	RAMPAGE_only	9	12	46	1.857112	5.013858	chr6	16277565	16277912	LINE|L2|L2b	-	chr6	16289517	16295544	GMPR|ENST00000544145.1	+	16289517,16290461,16295005	16289568,16290621,16295544	0.913043
right_atrium_auricular_region_female_adult_53_years	chr17	68520135	68520136	68520135	+	RAMPAGE_only	11	11	13	0.524836	3.251629	chr17	68519963	68520291	LTR|ERVL-MaLR|MLT1I	-	chr17	68515399	68551319	PRKAR1A|ENST00000588188.6	+	68515399,68522755,68523724,68524015,68524911,68525753,68527839,68528869,68529919,68551083	68515576,68522926,68523816,68524077,68524958,68525912,68527900,68528991,68530001,68551319	0.615385
right_atrium_auricular_region_female_adult_53_years	chr9	33393999	33394025	33393999	-	High_confidence	2	2	9	0.363348	3.169925	chr9	33393691	33394003	LINE|L2|L2b	+	chr9	33385505	33394176	AQP7|ENST00000447660.3	-	33385505,33386076,33386403,33393796	33385866,33386195,33386541,33394176	0.777778
right_atrium_auricular_region_female_adult_53_years	chr4	185620090	185620126	185620125	-	RAMPAGE_only	22	23	128	5.167615	4.597926	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.921875
right_atrium_auricular_region_female_adult_53_years	chr12	45292790	45292845	45292844	+	High_confidence	5	5	20	0.807440	3.511085	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.950000
right_atrium_auricular_region_female_adult_53_years	chr12	112506615	112506664	112506615	+	RAMPAGE_only	5	5	23	0.928556	4.349649	chr12	112506599	112506946	LTR|ERVL-MaLR|MLT1H	-	chr12	112418913	112509913	PTPN11|ENST00000351677.6	+	112418913,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486474,112488442,112489023,112502143,112504694,112505824	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504796,112509913	1.000000
right_atrium_auricular_region_female_adult_53_years	chr5	176411458	176411459	176411458	-	RAMPAGE_only	55	61	74	2.987527	5.272780	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.770270
right_atrium_auricular_region_female_adult_53_years	chr5	60533916	60533920	60533919	+	RAMPAGE_only	12	17	25	1.009300	3.675311	chr5	60533762	60534097	LTR|ERVL-MaLR|MSTD	+	chr5	60546218	60546349	RF02161|ENST00000619680.1	+	60546218	60546349	0.800000
right_atrium_auricular_region_female_adult_53_years	chr12	92559379	92559435	92559379	+	High_confidence	7	7	26	1.049672	4.023146	chr12	92559203	92559466	SINE|MIR|MIR	-	chr12	92559403	92584279	STRG.23561.1	+	92559403,92582998	92559680,92584279	0.884615
right_atrium_auricular_region_female_adult_53_years	chr7	130984057	130984091	130984057	-	RAMPAGE_only	4	4	19	0.767068	3.932138	chr7	130983943	130984021	SINE|MIR|MIR	-	chr7	130944197	131052493	LINC-PINT|ENST00000643373.1	-	130944197,130945719,130984052,131052424	130944889,130945855,130984109,131052493	0.947368
right_atrium_auricular_region_female_adult_53_years	chr2	163121648	163121706	163121682	+	High_confidence	7	7	28	1.130416	4.392747	chr2	163121522	163122034	LINE|L1|L1ME2	-	chr2	163121726	163124442	STRG.5126.1	+	163121726,163124118	163121927,163124442	0.857143
right_atrium_auricular_region_female_adult_53_years	chr5	43583511	43583512	43583511	-	RAMPAGE_only	4	5	7	0.282604	2.521641	chr5	43583213	43583828	LTR|ERV1|MER39B	-	chr5	43571593	43603104	NNT-AS1|ENST00000513560.6	-	43571593,43583466,43602777	43575935,43583566,43603104	1.000000
right_atrium_auricular_region_female_adult_53_years	chr9	127874880	127874881	127874880	-	High_confidence	6	6	6	0.242232	2.584963	chr9	127874829	127874913	SINE|MIR|MIR3	+	chr9	127867998	127875007	AK1|ENST00000373156.5	-	127867998,127868320,127871822,127872689,127873025,127874610,127874876	127868076,127868512,127871939,127872853,127873061,127874649,127875007	0.500000
right_atrium_auricular_region_female_adult_53_years	chr6	43062043	43062069	43062061	+	High_confidence	7	9	25	1.009300	4.084963	chr6	43061696	43062256	LINE|L2|L2a	-	chr6	43062527	43066356	KLC4|ENST00000472172.1	+	43062527,43065619,43066305	43063147,43065701,43066356	0.560000
right_atrium_auricular_region_female_adult_53_years	chr4	79492539	79492572	79492539	+	High_confidence	4	4	9	0.363348	3.169925	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492591	79493551	STRG.9022.1	+	79492591,79493151	79492623,79493551	0.555556
right_atrium_auricular_region_female_adult_53_years	chr2	178679623	178679638	178679623	-	RAMPAGE_only	3	3	7	0.282604	2.521641	chr2	178679617	178679655	LINE|CR1|L3	-	chr2	178525988	178686138	STRG.6069.10	-	178525988,178527445,178528273,178528527,178529959,178530240,178535981,178536937,178537341,178538539,178538945,178539381,178540067,178541281,178542263,178542661,178543068,178543833,178544200,178545387,178545819,178546211,178546599,178547002,178547406,178549569,178549985,178550966,178551629,178553501,178553913,178554452,178554864,178556847,178557252,178557647,178558340,178559310,178576528,178576922,178577601,178577987,178578610,178578805,178579560,178579938,178580321,178581498,178581905,178582295,178582939,178583606,178584275,178584668,178585071,178586504,178587117,178587515,178587898,178588537,178591598,178591977,178592378,178592774,178593172,178593567,178593960,178594343,178595506,178597537,178597907,178598505,178598747,178599145,178599553,178600853,178601264,178601657,178601881,178602001,178602281,178603875,178604707,178604986,178605413,178607020,178607400,178607784,178608177,178608605,178609207,178609683,178610089,178610992,178611371,178611757,178612056,178612276,178612772,178613160,178613750,178614051,178614465,178614846,178615306,178615640,178616478,178616728,178617119,178617324,178617778,178618188,178618583,178619620,178619987,178620216,178620714,178621101,178621474,178621839,178622669,178625272,178629300,178630240,178630803,178631033,178632146,178632525,178632917,178633186,178633412,178633816,178634365,178634722,178635164,178635439,178635962,178636397,178637368,178639698,178640047,178640540,178641240,178642236,178654444,178658704,178670217,178673632,178674313,178678124,178678413,178678746,178681660,178682696,178685252,178685517	178527307,178527748,178528427,178529219,178530116,178535849,178536575,178537243,178537917,178538839,178539251,178539966,178540370,178541584,178542563,178542949,178543662,178544115,178544506,178545693,178546116,178546502,178546905,178547305,178549473,178549869,178550273,178551260,178553396,178553807,178554216,178554752,178555152,178557144,178557555,178558235,178558637,178576416,178576831,178577510,178577898,178578185,178578715,178579393,178579848,178580229,178580609,178581804,178582208,178582592,178583227,178583906,178584578,178584968,178585347,178586807,178587417,178587800,178588219,178591504,178591892,178592277,178592660,178593083,178593475,178593867,178594242,178594646,178595809,178597819,178598058,178598654,178599062,178599445,178599850,178601171,178601564,178601787,178601914,178602150,178602590,178604305,178604898,178605295,178605713,178607314,178607685,178608081,178608477,178608908,178609570,178609986,178610389,178611271,178611677,178611954,178612162,178612576,178613072,178613276,178613937,178614348,178614753,178614968,178615484,178615788,178616630,178617013,178617234,178617512,178618081,178618491,178618853,178619887,178620112,178620625,178620993,178621368,178621741,178622008,178622767,178625396,178629443,178630367,178630943,178631300,178632413,178632792,178633044,178633326,178633676,178634083,178634629,178634849,178635304,178635715,178636241,178636799,178637419,178639788,178640110,178640630,178641315,178642317,178654534,178658794,178670295,178673710,178674409,178678208,178678497,178678830,178681738,178682903,178685330,178686138	1.000000
right_atrium_auricular_region_female_adult_53_years	chr8	18076304	18076325	18076304	-	High_confidence	39	43	68	2.745295	5.322217	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18066766	18076305	ASAH1|ENST00000637872.1	-	18066766,18069791,18071299,18075540,18076176	18067298,18069878,18071390,18075587,18076305	0.779412
right_atrium_auricular_region_female_adult_53_years	chr16	761096	761134	761114	+	High_confidence	110	116	526	21.235668	6.311535	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.969582
right_atrium_auricular_region_female_adult_53_years	chr21	28048446	28048447	28048446	+	High_confidence	8	9	9	0.363348	3.169925	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	98733157	98733222	98733221	+	High_confidence	8	9	32	1.291904	4.518397	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.968750
right_atrium_auricular_region_female_adult_53_years	chrX	38612520	38612626	38612597	+	RAMPAGE_only	37	42	191	7.711051	5.907203	chrX	38612500	38614189	LINE|L1|HAL1	-	chrX	38570682	38675816	TSPAN7|ENST00000488893.5	+	38570682,38666120,38671375,38674220,38675704	38570946,38666309,38671450,38674316,38675816	0.743455
right_atrium_auricular_region_female_adult_53_years	chr10	52282196	52282296	52282196	+	RAMPAGE_only	3	3	25	1.009300	4.373661	chr10	52282132	52282197	LINE|CR1|L3	+	chr10	52046866	52294176	PRKG1|ENST00000373975.3	+	52046866,52054483,52062536,52081596,52133839,52161888,52251569,52271349,52272391,52280788,52282152,52288725,52288930,52290223,52293801	52046926,52054561,52062631,52081657,52133905,52161963,52251666,52271489,52272481,52280930,52282316,52288848,52288993,52290290,52294176	1.000000
right_atrium_auricular_region_female_adult_53_years	chr6	2949651	2949673	2949672	-	RAMPAGE_only	8	9	20	0.807440	4.142664	chr6	2949217	2950248	LINE|L2|L2a	+	chr6	2948169	2955882	SERPINB6|ENST00000644697.1	-	2948169,2948913,2953043,2954591	2948699,2949069,2953186,2955882	0.800000
right_atrium_auricular_region_female_adult_53_years	chr9	101474984	101475006	101475005	-	RAMPAGE_only	4	7	13	0.524836	3.392747	chr9	101474763	101474992	SINE|MIR|MIRb	-	chr9	101473157	101486770	TMEM246|NM_001303108.1	-	101473157,101486567	101477169,101486770	1.000000
right_atrium_auricular_region_female_adult_53_years	chr2	227164620	227164621	227164620	+	High_confidence	22	22	27	1.090044	4.563856	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.777778
right_atrium_auricular_region_female_adult_53_years	chr12	29317853	29317866	29317865	-	High_confidence	6	7	17	0.686324	3.625000	chr12	29317690	29317914	SINE|MIR|MIRb	-	chr12	29280414	29317848	LOC100506606|NR_103860.1	-	29280414,29282163,29292214,29293065,29307849,29309770,29317707	29281542,29282360,29292328,29293540,29308044,29309903,29317848	0.882353
right_atrium_auricular_region_female_adult_53_years	chr16	28952152	28952153	28952152	+	RAMPAGE_only	4	4	7	0.282604	2.521641	chr16	28952153	28952214	DNA|hAT-Ac|OldhAT1	+	chr16	28950996	28966465	NFATC2IP|NM_032815.3	+	28950996,28952131,28954564,28955977,28956150,28958716,28958990,28963704	28951398,28952204,28954682,28956058,28956337,28958861,28959100,28966465	1.000000
right_atrium_auricular_region_female_adult_53_years	chr2	9554953	9554954	9554953	-	High_confidence	7	7	9	0.363348	3.000000	chr2	9554869	9555063	DNA|hAT-Tip100?|MamRep1879	-	chr2	9488636	9554729	ADAM17|ENST00000648548.1	-	9488636,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152,9551474,9554708	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526264,9527954,9535922,9536828,9543285,9551757,9554729	0.888889
right_atrium_auricular_region_female_adult_53_years	chr16	760733	760821	760819	+	High_confidence	19	27	61	2.462692	5.086315	chr16	760734	760840	SINE|MIR|MIRc	-	chr16	760766	768865	MSLN|ENST00000566549.5	+	760766,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766667,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	0.950820
right_atrium_auricular_region_female_adult_53_years	chr2	130428509	130428553	130428541	-	High_confidence	4	5	19	0.767068	4.037401	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046259.1	-	130416749,130419070,130425090,130425913,130427703	130418298,130419245,130425158,130426038,130428546	1.000000
right_atrium_auricular_region_female_adult_53_years	chr5	151158474	151158502	151158498	-	High_confidence	8	9	22	0.888184	4.277613	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.909091
right_atrium_auricular_region_female_adult_53_years	chr15	40894518	40894539	40894518	+	High_confidence	3	3	11	0.444092	3.121928	chr15	40894565	40894630	LINE|CR1|X6A_LINE	+	chr15	40894466	40902861	VPS18|ENST00000558474.1	+	40894466,40895937,40898906,40902615	40894859,40896079,40898998,40902861	0.636364
right_atrium_auricular_region_female_adult_53_years	chr2	174410286	174410288	174410287	+	High_confidence	7	12	16	0.645952	3.906891	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.750000
right_atrium_auricular_region_female_adult_53_years	chr3	50226714	50226715	50226714	+	High_confidence	6	6	9	0.363348	3.169925	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	0.888889
right_atrium_auricular_region_female_adult_53_years	chr3	179730215	179730255	179730254	+	RAMPAGE_only	2	2	7	0.282604	2.521641	chr3	179730289	179730416	LINE|L1|L1ME4a	+	chr3	179721563	179761151	USP13|ENST00000497155.1	+	179721563,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179761111	179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179761151	1.000000
right_atrium_auricular_region_female_adult_53_years	chr5	62432219	62432268	62432226	+	High_confidence	15	15	73	2.947155	5.510067	chr5	62432201	62432725	LINE|L1|L1M4b	-	chr5	62432241	62451863	STRG.10374.5	+	62432241,62437273,62442982,62449926,62451729	62432354,62437417,62443083,62449999,62451863	0.753425
right_atrium_auricular_region_female_adult_53_years	chr1	153967486	153967512	153967486	+	High_confidence	9	10	15	0.605580	3.506891	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.933333
right_atrium_auricular_region_female_adult_53_years	chr22	36328035	36328095	36328083	-	High_confidence	15	15	61	2.462692	5.211486	chr22	36327959	36328139	SINE|MIR|MIRb	+	chr22	36320273	36328952	MYH9|ENST00000463027.1	-	36320273,36320797,36321757,36322428,36326567,36327460,36328858	36320363,36320896,36321821,36322521,36326661,36327488,36328952	0.639344
right_atrium_auricular_region_female_adult_53_years	chr1	21227164	21227176	21227164	-	RAMPAGE_only	6	6	12	0.484464	3.277613	chr1	21227023	21227146	SINE|Alu|AluJr4	-	chr1	21219813	21222081	ECE1|ENST00000531334.1	-	21219813,21221746	21220131,21222081	0.666667
right_atrium_auricular_region_female_adult_53_years	chr1	20031540	20031541	20031540	+	RAMPAGE_only	12	13	16	0.645952	3.906891	chr1	20031175	20034775	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.750000
right_atrium_auricular_region_female_adult_53_years	chr16	67571154	67571189	67571154	+	High_confidence	4	4	15	0.605580	2.866248	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	1.000000
right_atrium_auricular_region_female_adult_53_years	chr4	2861154	2861155	2861154	+	RAMPAGE_only	6	6	6	0.242232	2.584963	chr4	2860917	2861297	LINE|L2|L2a	-	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.666667
right_atrium_auricular_region_female_adult_53_years	chr3	9973632	9973639	9973632	-	RAMPAGE_only	10	10	20	0.807440	3.721612	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.950000
right_atrium_auricular_region_female_adult_53_years	chr8	32927967	32927977	32927976	+	High_confidence	64	76	158	6.378775	6.075703	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927980	33045536	STRG.16177.2	+	32927980,32996200,33041634,33044366	32928093,32996316,33041743,33045536	0.892405
right_atrium_auricular_region_female_adult_53_years	chr4	2867814	2867851	2867835	+	High_confidence	34	34	138	5.571335	6.249803	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
right_atrium_auricular_region_female_adult_53_years	chr6	56839178	56839181	56839178	-	RAMPAGE_only	6	6	10	0.403720	2.947703	chr6	56839131	56839380	LTR|ERVL-MaLR|MLT1J	+	chr6	56476180	56843146	STRG.12806.5	-	56476180,56477344,56482049,56482682,56485311,56487103,56489489,56492226,56492933,56494009,56497378,56497855,56501079,56501519,56503996,56506442,56506666,56508528,56509641,56511196,56515449,56517197,56517500,56526360,56527492,56528840,56529447,56529973,56532343,56535121,56536778,56552183,56555344,56557318,56560293,56561307,56562137,56568468,56569855,56572099,56572746,56573678,56578813,56592181,56593662,56597739,56598475,56600068,56601442,56602881,56603204,56603563,56603836,56610426,56611507,56614355,56624529,56625156,56627203,56627998,56629249,56630244,56631210,56631882,56632853,56634131,56634461,56634800,56635588,56636556,56639258,56639449,56639695,56639928,56640142,56641946,56642409,56645865,56646086,56648569,56650925,56651131,56670640,56699652,56701887,56703710,56704279,56735227,56843054	56476337,56477488,56482178,56482877,56485471,56487273,56489609,56492433,56493089,56494180,56497507,56498053,56501235,56501693,56504098,56506544,56506789,56508755,56509873,56511400,56515668,56517305,56517620,56526567,56527734,56528925,56529774,56530133,56532510,56535292,56536940,56553655,56555840,56557518,56560423,56561549,56562200,56568595,56570012,56572266,56573064,56573887,56578937,56592358,56594193,56598006,56598709,56600221,56601676,56603031,56603420,56603713,56609344,56610562,56611596,56614484,56624628,56625264,56627287,56628161,56629443,56630383,56631389,56632040,56633037,56634258,56634616,56634953,56635714,56636652,56639363,56639611,56639773,56640057,56640605,56642101,56642503,56645993,56646182,56648689,56651032,56651244,56670807,56699745,56701965,56703746,56704369,56735289,56843146	0.800000
right_atrium_auricular_region_female_adult_53_years	chr15	34988764	34988768	34988764	-	High_confidence	3	3	6	0.242232	2.584963	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.833333
right_atrium_auricular_region_female_adult_53_years	chr15	41298661	41298677	41298663	+	RAMPAGE_only	2	3	8	0.322976	2.807355	chr15	41298613	41298908	SINE|Alu|AluSx1	+	chr15	41284004	41306534	OIP5-AS1|ENST00000500949.6	+	41284004,41285224,41286010,41298040	41284110,41285363,41286100,41306534	0.875000
right_atrium_auricular_region_female_adult_53_years	chr2	174118195	174118206	174118195	-	RAMPAGE_only	2	2	7	0.282604	2.584963	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075189	174079351	OLA1|ENST00000497760.1	-	174075189,174078967	174075527,174079351	0.714286
right_atrium_auricular_region_female_adult_53_years	chr21	28090393	28090410	28090409	+	High_confidence	4	5	12	0.484464	3.277613	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.916667
right_atrium_auricular_region_female_adult_53_years	chr17	42403553	42404016	42403958	-	RAMPAGE_only	26	26	421	16.996609	6.890425	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	1.000000
right_atrium_auricular_region_female_adult_53_years	chr9	117252795	117252796	117252795	+	High_confidence	173	195	208	8.397374	5.745247	chr9	117252607	117252810	SINE|MIR|MIRb	-	chr9	117252744	117260014	STRG.18505.1	+	117252744,117257617	117252916,117260014	0.947115
right_atrium_auricular_region_female_adult_53_years	chr2	201163955	201163966	201163965	+	RAMPAGE_only	5	5	12	0.484464	3.095795	chr2	201163983	201164293	SINE|Alu|AluSx1	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	0.916667
right_atrium_auricular_region_female_adult_53_years	chr7	107580245	107580267	107580264	+	High_confidence	957	959	4856	196.046395	7.262079	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.960873
right_atrium_auricular_region_female_adult_53_years	chr10	80201495	80201499	80201498	-	High_confidence	4	4	11	0.444092	3.095795	chr10	80201225	80201570	LINE|L2|L2	+	chr10	80155587	80201650	STRG.19816.2	-	80155587,80157640,80157966,80159099,80161934,80163348,80163533,80164052,80166083,80166889,80167225,80168968,80170799,80172806,80176106,80201258	80155912,80157763,80158025,80159195,80162028,80163405,80163613,80164143,80166197,80166984,80167313,80169358,80170915,80172869,80176155,80201650	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	120395859	120395946	120395859	-	RAMPAGE_only	9	9	54	2.180088	4.657032	chr3	120395790	120395849	SINE|MIR|MIR3	-	chr3	120394213	120451071	FSTL1|NM_007085.4	-	120394213,120399882,120402807,120403241,120404852,120409531,120410951,120411853,120415922,120450683,120450896	120396996,120399959,120402918,120403354,120404971,120409662,120410984,120411983,120416027,120450746,120451071	1.000000
right_atrium_auricular_region_female_adult_53_years	chr10	72176854	72176914	72176854	-	RAMPAGE_only	12	17	69	2.785667	5.513646	chr10	72176827	72177143	LINE|L2|L2c	+	chr10	72097040	72161556	ASCC1|ENST00000530394.5	-	72097040,72102333,72128081,72133056,72152868,72161537	72097450,72102412,72128167,72133181,72152988,72161556	0.710145
right_atrium_auricular_region_female_adult_53_years	chr8	27977120	27977126	27977125	-	High_confidence	34	35	52	2.099344	4.958563	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977114	STRG.16131.3	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977114	0.903846
right_atrium_auricular_region_female_adult_53_years	chr22	35611920	35611962	35611961	-	RAMPAGE_only	15	17	34	1.372648	4.312036	chr22	35611957	35612110	SINE|MIR|MIRb	-	chr22	35606763	35615713	MB|ENST00000401702.5	-	35606763,35610883,35615573	35607443,35611106,35615713	1.000000
right_atrium_auricular_region_female_adult_53_years	chr18	24326525	24326622	24326594	+	High_confidence	66	84	269	10.860066	5.530336	chr18	24326304	24326623	LTR|ERVL-MaLR|MLT1O	+	chr18	24326433	24402714	STRG.30690.1	+	24326433,24335925,24359991,24360848,24401099	24326735,24336110,24360111,24360923,24402714	0.869888
right_atrium_auricular_region_female_adult_53_years	chr12	65464314	65464377	65464376	+	RAMPAGE_only	22	23	122	4.925383	5.083759	chr12	65464285	65464467	SINE|Alu|AluSc	+	chr12	65279484	65466868	MSRB3|ENST00000642404.1	+	65279484,65306862,65308528,65326825,65328525,65368997,65453727,65463154	65279517,65307026,65308655,65326934,65328603,65369026,65453825,65466868	0.983607
right_atrium_auricular_region_female_adult_53_years	chr10	32954321	32954323	32954321	-	RAMPAGE_only	3	8	9	0.363348	3.000000	chr10	32953969	32954360	LINE|L2|L2	+	chr10	32928149	32955663	ITGB1|ENST00000480226.5	-	32928149,32929821,32932514,32935491,32955569	32928264,32930044,32932600,32935558,32955663	0.888889
right_atrium_auricular_region_female_adult_53_years	chr1	174204831	174204834	174204833	+	RAMPAGE_only	5	7	10	0.403720	3.169925	chr1	174204635	174205029	LTR|ERVL-MaLR|MSTA	+	chr1	174220711	174231245	RABGAP1L|ENST00000487987.1	+	174220711,174231144	174221164,174231245	0.900000
right_atrium_auricular_region_female_adult_53_years	chr22	42721262	42721273	42721262	-	High_confidence	7	7	15	0.605580	3.506891	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.800000
right_atrium_auricular_region_female_adult_53_years	chr6	2768837	2768875	2768837	+	High_confidence	2	3	13	0.524836	3.584963	chr6	2768884	2768965	SINE|MIR|MIRc	+	chr6	2768772	2785745	WRNIP1|ENST00000380764.1	+	2768772,2770119,2779262,2783405,2784323,2785006	2768882,2770361,2779492,2783561,2784403,2785745	0.846154
right_atrium_auricular_region_female_adult_53_years	chrX	48589967	48590030	48590029	+	High_confidence	9	9	35	1.413020	4.620152	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48590041	48598827	WDR13|ENST00000470124.1	+	48590041,48597957,48598716	48590287,48598037,48598827	0.685714
right_atrium_auricular_region_female_adult_53_years	chr12	79873266	79873267	79873266	-	High_confidence	6	6	6	0.242232	2.584963	chr12	79873243	79873519	DNA|hAT-Charlie|Charlie1a	+	chr12	79828370	79872872	PPP1R12A|ENST00000548318.1	-	79828370,79832331,79845301,79848787,79872807	79828464,79832491,79845420,79848931,79872872	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	27558484	27558504	27558503	-	High_confidence	4	4	9	0.363348	2.725481	chr1	27558497	27558557	SINE|MIR|MIR3	+	chr1	27551667	27558361	AHDC1|ENST00000487743.3	-	27551667,27552038,27552891,27553073,27558304	27551850,27552189,27552929,27553185,27558361	0.666667
right_atrium_auricular_region_female_adult_53_years	chr16	17104740	17104769	17104768	-	RAMPAGE_only	2	2	6	0.242232	2.584963	chr16	17104676	17104935	DNA|hAT-Charlie|MER102c	+	chr16	17101768	17470881	XYLT1|ENST00000261381.6	-	17101768,17117645,17127665,17134472,17138354,17141152,17158828,17198211,17200481,17258987,17358011,17470433	17109017,17117979,17127861,17134735,17138531,17141369,17158909,17198414,17200654,17259498,17358050,17470881	1.000000
right_atrium_auricular_region_female_adult_53_years	chr7	149719350	149719437	149719350	+	High_confidence	86	90	239	9.648906	6.760087	chr7	149718995	149719389	LTR|ERVL-MaLR|MLT1C	-	chr7	149719421	149720990	KRBA1|ENST00000497895.5	+	149719421,149720007,149720834	149719672,149720127,149720990	0.589958
right_atrium_auricular_region_female_adult_53_years	chr16	8843593	8843612	8843611	+	RAMPAGE_only	6	6	10	0.403720	3.121928	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	1.000000
right_atrium_auricular_region_female_adult_53_years	chr12	21818170	21818210	21818179	-	RAMPAGE_only	4	4	13	0.524836	2.751629	chr12	21817882	21818136	LINE|L1|L1PA8A	-	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	0.923077
right_atrium_auricular_region_female_adult_53_years	chr1	31376356	31376357	31376356	-	High_confidence	60	61	61	2.462692	4.534579	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.901639
right_atrium_auricular_region_female_adult_53_years	chr7	87040212	87040215	87040212	-	High_confidence	4	4	11	0.444092	3.095795	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.727273
right_atrium_auricular_region_female_adult_53_years	chr4	99021631	99021632	99021631	-	High_confidence	239	240	248	10.012254	6.214335	chr4	99021524	99021908	LTR|ERV1|LTR10C	-	chr4	99012767	99021630	STRG.9178.1	-	99012767,99021303	99016142,99021630	0.838710
right_atrium_auricular_region_female_adult_53_years	chr7	158863386	158863409	158863386	+	RAMPAGE_only	5	5	25	1.009300	4.323856	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	154975505	154975546	154975505	+	High_confidence	2	2	9	0.363348	3.169925	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.888889
right_atrium_auricular_region_female_adult_53_years	chr3	132285550	132285558	132285557	-	High_confidence	6	6	10	0.403720	3.169925	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.600000
right_atrium_auricular_region_female_adult_53_years	chr14	103848791	103848814	103848813	-	High_confidence	5	5	9	0.363348	2.750000	chr14	103848808	103849048	SINE|MIR|MIRb	+	chr14	103749213	103848931	STRG.25886.5	-	103749213,103752999,103754069,103757649,103778744,103784794,103797370,103848271	103749934,103753196,103754244,103757751,103778821,103784914,103797518,103848931	0.888889
right_atrium_auricular_region_female_adult_53_years	chr20	25296839	25296874	25296873	+	RAMPAGE_only	14	14	25	1.009300	4.019471	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	1.000000
right_atrium_auricular_region_female_adult_53_years	chr2	37020017	37020018	37020017	-	RAMPAGE_only	27	29	32	1.291904	4.875000	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	37008167	37013995	HEATR5B|ENST00000471051.1	-	37008167,37013840	37008848,37013995	0.562500
right_atrium_auricular_region_female_adult_53_years	chr4	94664539	94664598	94664597	+	RAMPAGE_only	13	13	58	2.341576	4.623056	chr4	94664587	94664879	SINE|Alu|AluSx	+	chr4	94584400	94665481	PDLIM5|ENST00000380176.7	+	94584400,94585564,94586407,94618003,94640275,94654459,94657426,94662421,94663977	94585003,94585737,94586444,94618191,94640450,94654640,94657547,94662537,94665481	0.965517
right_atrium_auricular_region_female_adult_53_years	chr3	112332572	112332573	112332572	+	High_confidence	4	5	6	0.242232	2.584963	chr3	112332311	112332606	SINE|Alu|AluY	+	chr3	112332499	112347830	CD200|ENST00000606471.5	+	112332499,112344961,112347557	112332701,112345288,112347830	0.666667
right_atrium_auricular_region_female_adult_53_years	chr9	121313963	121314021	121314020	+	RAMPAGE_only	165	168	711	28.704487	6.143134	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.998594
right_atrium_auricular_region_female_adult_53_years	chr10	89516196	89516227	89516196	-	High_confidence	14	14	61	2.462692	5.471378	chr10	89516159	89516235	LINE|L2|L2a	+	chr10	89430290	89516378	STRG.19960.2	-	89430290,89436059,89438603,89441107,89443755,89462378,89512082,89516093	89433326,89436319,89439183,89441251,89443859,89462624,89512143,89516378	0.885246
right_atrium_auricular_region_female_adult_53_years	chr15	75626279	75626305	75626304	-	High_confidence	3	5	10	0.403720	3.121928	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
right_atrium_auricular_region_female_adult_53_years	chr9	38650274	38650291	38650290	+	High_confidence	13	14	20	0.807440	3.784184	chr9	38650217	38650807	LINE|L2|L2b	-	chr9	38650256	38662717	AL591543.1|ENST00000642095.1	+	38650256,38658688	38650376,38662717	1.000000
right_atrium_auricular_region_female_adult_53_years	chr15	50766688	50766708	50766700	-	High_confidence	3	3	12	0.484464	3.277613	chr15	50766525	50766821	LINE|L2|L2a	+	chr15	50702265	50765808	SPPL2A|ENST00000261854.9	-	50702265,50719939,50722123,50725220,50726320,50730964,50732602,50736100,50736643,50739679,50747494,50748112,50748687,50749635,50765467	50707874,50720100,50722201,50725323,50726377,50731039,50732684,50736202,50736740,50739828,50747628,50748202,50748870,50749746,50765808	0.916667
right_atrium_auricular_region_female_adult_53_years	chr6	137218755	137218822	137218821	-	High_confidence	13	13	31	1.251532	4.478232	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.967742
right_atrium_auricular_region_female_adult_53_years	chr16	67539735	67539740	67539739	+	High_confidence	3	3	7	0.282604	2.584963	chr16	67539759	67539840	DNA|TcMar-Tigger|Tigger19b	+	chr16	67539864	67541758	RIPOR1|ENST00000569474.5	+	67539864,67540052,67540299,67540457,67541429,67541652	67539899,67540205,67540363,67540704,67541578,67541758	0.857143
right_atrium_auricular_region_female_adult_53_years	chr21	44962756	44962819	44962790	+	High_confidence	24	24	87	3.512363	5.484177	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44962754	44976973	STRG.34233.4	+	44962754,44967033,44973196,44976679	44962870,44967181,44973265,44976973	0.977011
right_atrium_auricular_region_female_adult_53_years	chr6	28354137	28354206	28354205	-	High_confidence	18	19	61	2.462692	5.446971	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.704918
right_atrium_auricular_region_female_adult_53_years	chr7	139566684	139566726	139566684	-	RAMPAGE_only	19	19	33	1.332276	3.827820	chr7	139566613	139566765	SINE|MIR|MIRb	+	chr7	139561569	139777718	HIPK2|ENST00000406875.7	-	139561569,139575127,139583816,139596716,139600416,139604080,139613201,139614285,139620400,139626600,139628952,139631164,139631601,139715931,139777604	139573397,139575288,139584064,139596998,139600596,139604223,139613323,139614493,139620563,139626785,139629039,139631284,139631725,139717015,139777718	0.969697
right_atrium_auricular_region_female_adult_53_years	chr7	135931338	135931401	135931383	+	RAMPAGE_only	3	3	14	0.565208	3.546594	chr7	135931143	135931451	LINE|L2|L2c	-	chr7	135926454	135932881	AC015987.1|ENST00000419211.1	+	135926454,135932208	135926585,135932881	0.714286
right_atrium_auricular_region_female_adult_53_years	chr3	48421693	48421710	48421693	-	RAMPAGE_only	5	5	11	0.444092	2.921928	chr3	48421525	48421664	SINE|MIR|MIRb	-	chr3	48403853	48429463	PLXNB1|NM_002673.5	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48429252	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48429463	0.909091
right_atrium_auricular_region_female_adult_53_years	chr12	122064332	122064347	122064332	+	RAMPAGE_only	5	5	13	0.524836	3.584963	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.846154
right_atrium_auricular_region_female_adult_53_years	chr6	42902788	42902815	42902791	-	High_confidence	4	4	22	0.888184	3.748995	chr6	42902632	42903629	LTR|ERVK|LTR5B	-	chr6	42893752	42902862	STRG.12639.1	-	42893752,42901283,42902524	42894755,42901328,42902862	0.909091
right_atrium_auricular_region_female_adult_53_years	chr10	80201429	80201467	80201466	-	High_confidence	3	4	9	0.363348	3.000000	chr10	80201225	80201570	LINE|L2|L2	+	chr10	80155587	80201650	STRG.19816.2	-	80155587,80157640,80157966,80159099,80161934,80163348,80163533,80164052,80166083,80166889,80167225,80168968,80170799,80172806,80176106,80201258	80155912,80157763,80158025,80159195,80162028,80163405,80163613,80164143,80166197,80166984,80167313,80169358,80170915,80172869,80176155,80201650	0.888889
right_atrium_auricular_region_female_adult_53_years	chr10	72355126	72355153	72355145	-	High_confidence	7	7	22	0.888184	3.784184	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.909091
right_atrium_auricular_region_female_adult_53_years	chr6	31587190	31587228	31587195	+	High_confidence	3	4	26	1.049672	3.921030	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	21551244	21551273	21551272	+	High_confidence	2	2	6	0.242232	2.584963	chr1	21551216	21551436	LINE|L2|L2c	-	chr1	21551278	21578012	ALPL|ENST00000374832.5	+	21551278,21553977,21560625,21561096,21563109,21564040,21568103,21570304,21573664,21575732,21576521,21577382	21551428,21554142,21560745,21561212,21563284,21564216,21568247,21570374,21573799,21575924,21576641,21578012	1.000000
right_atrium_auricular_region_female_adult_53_years	chr9	127762413	127762418	127762413	-	High_confidence	2	2	7	0.282604	2.584963	chr9	127762302	127762854	LINE|L2|L2a	+	chr9	127744897	127762416	SH2D3C|ENST00000440630.5	-	127744897,127747146,127749210,127751171,127761610,127762391	127745099,127747271,127749665,127751300,127761650,127762416	0.714286
right_atrium_auricular_region_female_adult_53_years	chr16	58423167	58423178	58423177	+	RAMPAGE_only	6	6	13	0.524836	3.251629	chr16	58423064	58423375	LINE|L1|L1ME3G	-	chr16	58421338	58441040	STRG.28198.1	+	58421338,58433809,58435691,58437155,58440544	58421421,58433948,58435823,58440478,58441040	0.769231
right_atrium_auricular_region_female_adult_53_years	chr4	73144765	73144797	73144770	-	RAMPAGE_only	6	7	19	0.767068	3.281373	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	1.000000
right_atrium_auricular_region_female_adult_53_years	chr22	39021125	39021177	39021146	+	High_confidence	5	5	32	1.291904	4.476410	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
right_atrium_auricular_region_female_adult_53_years	chr12	64715441	64715554	64715471	-	RAMPAGE_only	3	3	33	1.332276	4.127283	chr12	64715237	64715536	SINE|Alu|AluSx3	+	chr12	64713444	64752871	GNS|ENST00000418919.6	-	64713444,64720021,64721594,64723005,64728955,64737003,64739380,64740605,64743140,64744808,64745658,64747711,64752697	64716819,64720182,64721705,64723113,64729057,64737107,64739499,64740688,64743308,64744907,64745724,64747918,64752871	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	214278901	214278924	214278911	-	High_confidence	28	30	116	4.683151	5.939115	chr1	214278781	214279013	LINE|L2|L2c	+	chr1	214261548	214279002	STRG.3080.1	-	214261548,214264935,214278713	214262964,214264975,214279002	0.913793
right_atrium_auricular_region_female_adult_53_years	chr18	36807853	36807905	36807879	-	High_confidence	2	2	16	0.645952	3.906891	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.687500
right_atrium_auricular_region_female_adult_53_years	chr6	43013388	43013393	43013392	-	High_confidence	5	5	10	0.403720	3.321928	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
right_atrium_auricular_region_female_adult_53_years	chr5	139364707	139364731	139364716	+	RAMPAGE_only	7	7	23	0.928556	4.262692	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.652174
right_atrium_auricular_region_female_adult_53_years	chr17	61952970	61952990	61952970	-	RAMPAGE_only	2	2	9	0.363348	2.725481	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	1.000000
right_atrium_auricular_region_female_adult_53_years	chr4	4269609	4269623	4269613	-	High_confidence	13	14	37	1.493764	3.718309	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.945946
right_atrium_auricular_region_female_adult_53_years	chr20	34369409	34369439	34369438	+	RAMPAGE_only	4	4	17	0.686324	3.000000	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.941176
right_atrium_auricular_region_female_adult_53_years	chr16	15798664	15798689	15798664	-	RAMPAGE_only	6	8	29	1.170788	4.444188	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.965517
right_atrium_auricular_region_female_adult_53_years	chr12	118139096	118139097	118139096	+	High_confidence	12	12	12	0.484464	3.418296	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.750000
right_atrium_auricular_region_female_adult_53_years	chr18	12653084	12653098	12653097	-	High_confidence	3	4	8	0.322976	2.807355	chr18	12653065	12653265	DNA|hAT-Charlie|MER20	+	chr18	12506495	12653085	SPIRE1|ENST00000449797.5	-	12506495,12512453,12535475,12546673,12635061,12653000	12506641,12512531,12535601,12546904,12635096,12653085	0.625000
right_atrium_auricular_region_female_adult_53_years	chr18	46087118	46087229	46087118	-	High_confidence	13	13	97	3.916083	6.003271	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.804124
right_atrium_auricular_region_female_adult_53_years	chr6	28335749	28335750	28335749	+	High_confidence	120	126	129	5.207987	6.055232	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28335764	28337099	STRG.12268.1	+	28335764	28337099	0.976744
right_atrium_auricular_region_female_adult_53_years	chr22	37755631	37755658	37755631	+	RAMPAGE_only	2	2	9	0.363348	2.725481	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	1.000000
right_atrium_auricular_region_female_adult_53_years	chr2	242084137	242084296	242084137	-	High_confidence	30	30	295	11.909738	7.297079	chr2	242084049	242084116	SINE|MIR|MIRc	-	chr2	242057883	242084376	STRG.6105.1	-	242057883,242059119,242060296,242084095	242058884,242059193,242060770,242084376	0.677966
right_atrium_auricular_region_female_adult_53_years	chr1	201366569	201366610	201366609	-	RAMPAGE_only	4	4	14	0.565208	3.664498	chr1	201366578	201366724	DNA|hAT-Tip100|MER91A	-	chr1	201359007	201377680	TNNT2|ENST00000491504.5	-	201359007,201359622,201361278,201361912,201362385,201363295,201364297,201365190,201365609,201367770,201368161,201372026,201372144,201373213,201377622	201359255,201359663,201361369,201362022,201362394,201363406,201364375,201365307,201366871,201367806,201368227,201372041,201372155,201373268,201377680	1.000000
right_atrium_auricular_region_female_adult_53_years	chr6	118560507	118560546	118560533	+	RAMPAGE_only	11	11	33	1.332276	4.536670	chr6	118560173	118560601	DNA|TcMar-Tigger|Tigger2a	-	chr6	118548262	118561715	PLN|NM_002667.4	+	118548262,118558824	118548392,118561715	1.000000
right_atrium_auricular_region_female_adult_53_years	chr5	150651262	150651681	150651342	+	RAMPAGE_only	41	43	515	20.791576	6.450008	chr5	150651250	150651383	SINE|MIR|MIR3	+	chr5	150640677	150652337	SYNPO|ENST00000519664.1	+	150640677,150647943	150640854,150652337	0.998058
right_atrium_auricular_region_female_adult_53_years	chr5	150640041	150640042	150640041	+	High_confidence	4	4	6	0.242232	2.584963	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	1.000000
right_atrium_auricular_region_female_adult_53_years	chr2	36513735	36513760	36513735	+	High_confidence	5	6	17	0.686324	3.690117	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.647059
right_atrium_auricular_region_female_adult_53_years	chr5	150125450	150125474	150125473	-	RAMPAGE_only	6	6	18	0.726696	3.969816	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.777778
right_atrium_auricular_region_female_adult_53_years	chr4	116344039	116344040	116344039	+	RAMPAGE_only	5	6	7	0.282604	2.584963	chr4	116343893	116344146	SINE|Alu|AluSz6	-	chr4	116354173	116354577	STRG.9344.1	+	116354173	116354577	0.571429
right_atrium_auricular_region_female_adult_53_years	chr9	33394066	33394103	33394087	-	High_confidence	14	17	53	2.139716	5.262846	chr9	33394009	33394115	LINE|L2|L2b	+	chr9	33385505	33394176	AQP7|ENST00000447660.3	-	33385505,33386076,33386403,33393796	33385866,33386195,33386541,33394176	0.962264
right_atrium_auricular_region_female_adult_53_years	chr9	133584337	133584345	133584344	-	RAMPAGE_only	4	4	11	0.444092	3.095795	chr9	133584303	133584445	SINE|MIR|MIR3	+	chr9	133578956	133586197	FAM163B|ENST00000496132.1	-	133578956,133580130,133585975	133579429,133580246,133586197	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	44510995	44511020	44511019	-	High_confidence	3	3	6	0.242232	2.584963	chr3	44510972	44511269	SINE|Alu|AluSc8	+	chr3	44506669	44510630	STRG.6621.3	-	44506669,44510552	44506926,44510630	0.500000
right_atrium_auricular_region_female_adult_53_years	chr1	52708380	52708381	52708380	-	RAMPAGE_only	11	11	17	0.686324	3.327820	chr1	52708320	52708479	LINE|L2|L2c	+	chr1	52684450	52698366	COA7|ENST00000371538.4	-	52684450,52692726,52698220	52688168,52692867,52698366	0.941176
right_atrium_auricular_region_female_adult_53_years	chr16	10531367	10531368	10531367	-	RAMPAGE_only	4	4	6	0.242232	2.584963	chr16	10531325	10531629	SINE|Alu|AluSx	-	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	1.000000
right_atrium_auricular_region_female_adult_53_years	chr17	1369723	1369740	1369723	-	RAMPAGE_only	2	2	9	0.363348	2.947703	chr17	1369508	1369695	LINE|L1|L1MB8	-	chr17	1344538	1365058	YWHAE|ENST00000466227.6	-	1344538,1354210,1361929,1364858	1345499,1354347,1362008,1365058	0.888889
right_atrium_auricular_region_female_adult_53_years	chr14	55796687	55796688	55796687	-	High_confidence	33	35	48	1.937856	5.214163	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796688	LINC00520|ENST00000649892.1	-	55781136,55793367,55796602	55782581,55793456,55796688	0.750000
right_atrium_auricular_region_female_adult_53_years	chr1	97904675	97904679	97904675	-	RAMPAGE_only	2	2	7	0.282604	2.807355	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.857143
right_atrium_auricular_region_female_adult_53_years	chr20	44532569	44532570	44532569	+	High_confidence	7	7	8	0.322976	2.807355	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531915	44624247	PKIG|ENST00000372887.5	+	44531915,44582584,44589796,44614533,44623932	44531978,44582731,44589866,44614707,44624247	0.625000
right_atrium_auricular_region_female_adult_53_years	chr4	173521336	173521350	173521336	+	RAMPAGE_only	8	8	13	0.524836	3.700440	chr4	173521322	173521435	DNA|hAT-Charlie|MER5A	+	chr4	173527269	173583375	HAND2-AS1|ENST00000512099.5	+	173527269,173530966,173536847,173582704	173528501,173531078,173536970,173583375	0.538462
right_atrium_auricular_region_female_adult_53_years	chr8	53523963	53523964	53523963	-	High_confidence	8	9	11	0.444092	3.121928	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.909091
right_atrium_auricular_region_female_adult_53_years	chr10	113662680	113662728	113662680	-	RAMPAGE_only	46	46	98	3.956455	5.817272	chr10	113662586	113662659	LINE|L1|L1MA4A	-	chr10	113588715	113664046	NRAP|ENST00000369360.7	-	113588715,113589665,113590577,113592193,113595622,113597085,113597968,113604608,113605761,113606177,113608413,113610458,113612233,113614182,113614838,113615711,113617454,113620603,113621868,113623528,113624825,113626046,113628916,113629587,113631508,113631852,113633083,113634111,113640226,113641364,113645824,113646922,113650036,113650437,113651802,113652934,113654020,113657469,113662678,113663351,113663810	113589079,113589797,113590889,113592301,113595727,113597184,113598073,113604920,113605869,113606282,113608512,113610563,113612431,113614296,113614946,113615816,113617553,113620708,113622180,113623636,113624930,113626145,113629021,113629785,113631630,113631964,113633188,113634210,113640331,113641472,113645941,113647027,113650141,113650545,113651907,113653039,113654125,113657574,113662766,113663446,113664046	0.979592
right_atrium_auricular_region_female_adult_53_years	chr3	536198	536258	536198	+	High_confidence	19	20	97	3.916083	5.599711	chr3	535186	536320	LTR|ERV1|LTR12D	-	chr3	536230	846015	LINC01266|ENST00000420823.5	+	536230,592104,750214,840714,842375	536327,592183,750250,840810,846015	0.680412
right_atrium_auricular_region_female_adult_53_years	chr2	40610929	40610930	40610929	-	High_confidence	14	14	15	0.605580	3.324863	chr2	40610851	40611261	LTR|ERVL-MaLR|MSTB	-	chr2	40115249	40611053	SLC8A1|ENST00000405269.5	-	40115249,40139400,40160764,40164853,40174824,40177751,40428472,40610929	40115629,40139676,40160864,40164984,40174842,40177855,40430304,40611053	0.933333
right_atrium_auricular_region_female_adult_53_years	chrX	53585017	53585053	53585017	-	RAMPAGE_only	6	6	16	0.645952	3.506891	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.937500
right_atrium_auricular_region_female_adult_53_years	chr7	112995595	112995658	112995629	-	High_confidence	503	509	1618	65.321884	7.582048	chr7	112995411	112995725	LINE|L2|L2	+	chr7	112954645	112995634	STRG.15226.4	-	112954645,112956521,112973604,112977143,112980045,112986535,112995567	112954768,112956711,112973672,112977199,112980164,112986664,112995634	0.744129
right_atrium_auricular_region_female_adult_53_years	chr2	173223287	173223391	173223390	+	RAMPAGE_only	6	6	36	1.453392	3.701598	chr2	173223213	173223451	SINE|MIR|MIR	+	chr2	173075841	173227146	MAP3K20|ENST00000338983.7	+	173075841,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173221149	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173227146	0.944444
right_atrium_auricular_region_female_adult_53_years	chr19	51350335	51350373	51350368	-	RAMPAGE_only	8	8	25	1.009300	2.872511	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.920000
right_atrium_auricular_region_female_adult_53_years	chrX	20204028	20204057	20204028	-	RAMPAGE_only	2	2	9	0.363348	2.750000	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.888889
right_atrium_auricular_region_female_adult_53_years	chr4	13840843	13840917	13840904	-	High_confidence	33	38	85	3.431619	5.385413	chr4	13840869	13840990	SINE|MIR|MIRb	+	chr4	13765551	13840891	STRG.8557.1	-	13765551,13839433,13840760	13766960,13839590,13840891	0.705882
right_atrium_auricular_region_female_adult_53_years	chr7	131510247	131510278	131510247	-	High_confidence	5	5	22	0.888184	3.821928	chr7	131510213	131510511	SINE|Alu|AluSx3	+	chr7	131509068	131510898	PODXL|ENST00000482581.1	-	131509068,131510827	131509585,131510898	0.590909
right_atrium_auricular_region_female_adult_53_years	chr2	241641020	241641044	241641043	+	RAMPAGE_only	3	4	7	0.282604	2.807355	chr2	241640468	241641268	LINE|L2|L2a	-	chr2	241637728	241659187	ATG4B|ENST00000430617.6	+	241637728,241651009,241651263,241653306,241653511,241654545,241655270,241659107	241637760,241651111,241651335,241653369,241653610,241654647,241655343,241659187	0.857143
right_atrium_auricular_region_female_adult_53_years	chr14	77736987	77736988	77736987	-	High_confidence	9	9	14	0.565208	3.664498	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.928571
right_atrium_auricular_region_female_adult_53_years	chr16	4191224	4191365	4191353	-	RAMPAGE_only	11	11	103	4.158315	5.958985	chr16	4191330	4191627	SINE|Alu|AluSx1	+	chr16	4189373	4242075	SRL|ENST00000572111.1	-	4189373,4195552,4197798,4203165,4204532,4206726,4242006	4192964,4195786,4197915,4203261,4204634,4208104,4242075	0.990291
right_atrium_auricular_region_female_adult_53_years	chr19	55676618	55676639	55676618	+	High_confidence	2	2	7	0.282604	2.807355	chr19	55676523	55676713	SINE|MIR|MIRb	-	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.857143
right_atrium_auricular_region_female_adult_53_years	chr5	176943347	176943366	176943347	-	RAMPAGE_only	4	4	11	0.444092	2.846439	chr5	176943235	176943320	DNA|hAT-Charlie|Charlie10	-	chr5	176905065	176970793	UIMC1|ENST00000510698.2	-	176905065,176906010,176907113,176908522,176911310,176943334,176951473,176955958,176958092,176969600,176970741	176905492,176906047,176907177,176908694,176911389,176943488,176951577,176956035,176958154,176969706,176970793	0.818182
right_atrium_auricular_region_female_adult_53_years	chr6	144533105	144533113	144533105	+	RAMPAGE_only	3	3	7	0.282604	2.807355	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	194486575	194486631	194486575	-	High_confidence	11	11	60	2.422320	5.005110	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194403464	194486659	STRG.8225.1	-	194403464,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194486659	0.983333
right_atrium_auricular_region_female_adult_53_years	chr2	189571718	189571745	189571718	-	RAMPAGE_only	3	3	11	0.444092	2.921928	chr2	189571695	189571755	LINE|CR1|L3	+	chr2	189560589	189580811	SLC40A1|NM_014585.5	-	189560589,189563583,189565353,189571714,189572845,189575160,189579812,189580417	189562191,189564225,189565599,189571841,189572961,189575320,189579880,189580811	0.909091
right_atrium_auricular_region_female_adult_53_years	chr8	12522238	12522266	12522253	+	High_confidence	7	7	24	0.968928	3.795089	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12522586	12567269	STRG.15927.1	+	12522586,12530942,12565885	12522846,12531031,12567269	0.833333
right_atrium_auricular_region_female_adult_53_years	chr12	101824054	101824068	101824058	-	RAMPAGE_only	9	11	26	1.049672	4.053661	chr12	101824004	101824405	LTR|ERVL-MaLR|MLT1K	+	chr12	101767909	101830818	GNPTAB|ENST00000549940.5	-	101767909,101770020,101770405,101770995,101780151,101780556,101786011,101788547,101789937,101796676,101830558	101768160,101770191,101770585,101771157,101780286,101780621,101786217,101788589,101790057,101796762,101830818	0.961538
right_atrium_auricular_region_female_adult_53_years	chr16	15006426	15006455	15006454	+	RAMPAGE_only	3	5	10	0.403720	2.503258	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.500000
right_atrium_auricular_region_female_adult_53_years	chr1	56645623	56645680	56645679	+	High_confidence	7	7	42	1.695624	4.707677	chr1	56645691	56645853	SINE|MIR|MIR3	+	chr1	56645387	56715334	PRKAA2|ENST00000610361.1	+	56645387,56671440,56674380,56691393,56692357,56693764,56695934,56703970,56706091,56707474	56645474,56671447,56674522,56691487,56692502,56693852,56696159,56704475,56706218,56715334	0.547619
right_atrium_auricular_region_female_adult_53_years	chr1	147760601	147760608	147760601	-	High_confidence	109	112	163	6.580635	6.279740	chr1	147760317	147760652	LINE|L2|L2c	+	chr1	147756198	147760606	GJA5|ENST00000579774.2	-	147756198,147760498	147759271,147760606	0.987730
right_atrium_auricular_region_female_adult_53_years	chr20	3795740	3795781	3795750	+	High_confidence	15	15	57	2.301204	5.222180	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.964912
right_atrium_auricular_region_female_adult_53_years	chr6	6738944	6738964	6738955	-	High_confidence	5	5	16	0.645952	3.589898	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6704670	6739030	AL031123.1|ENST00000648205.1	-	6704670,6710871,6711696,6738908	6705078,6711059,6711858,6739030	0.562500
right_atrium_auricular_region_female_adult_53_years	chr10	14877011	14877063	14877027	+	RAMPAGE_only	11	15	59	2.381948	4.485262	chr10	14876839	14877141	LINE|L2|L2	-	chr10	14878782	14904315	SUV39H2|NM_001193424.1	+	14878782,14881499,14896845,14899538,14901132,14902405	14878919,14881645,14897517,14899685,14901262,14904315	0.881356
right_atrium_auricular_region_female_adult_53_years	chr5	172958918	172958925	172958918	+	High_confidence	7	8	15	0.605580	2.866248	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	1.000000
right_atrium_auricular_region_female_adult_53_years	chr5	32403108	32403109	32403108	-	RAMPAGE_only	5	5	7	0.282604	2.521641	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
right_atrium_auricular_region_female_adult_53_years	chr7	11194708	11194709	11194708	+	RAMPAGE_only	12	12	17	0.686324	3.852169	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.764706
right_atrium_auricular_region_female_adult_53_years	chr19	49086546	49086559	49086546	+	High_confidence	11	11	23	0.928556	4.142915	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.652174
right_atrium_auricular_region_female_adult_53_years	chr6	6739315	6739316	6739315	-	High_confidence	10	12	15	0.605580	3.506891	chr6	6738842	6739360	LTR|ERVL-MaLR|MLT1F1	+	chr6	6704670	6739030	AL031123.1|ENST00000648205.1	-	6704670,6710871,6711696,6738908	6705078,6711059,6711858,6739030	0.800000
right_atrium_auricular_region_female_adult_53_years	chr1	19980361	19980363	19980362	-	High_confidence	29	47	47	1.897484	4.762267	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	0.957447
right_atrium_auricular_region_female_adult_53_years	chr6	158627399	158627458	158627457	+	RAMPAGE_only	9	13	38	1.534136	4.607018	chr6	158627323	158627712	LINE|L2|L2a	-	chr6	158560099	158635428	STRG.13699.2	+	158560099,158573419,158580939,158583953,158585303,158589671,158605266,158607243,158608332,158608658,158623549,158625103,158625702,158628407,158629729,158631322,158631809	158560232,158573523,158580995,158584044,158585425,158589782,158605347,158607343,158608463,158608750,158623607,158625206,158625754,158628490,158629819,158631389,158635428	0.605263
right_atrium_auricular_region_female_adult_53_years	chr5	32571172	32571173	32571172	+	RAMPAGE_only	9	9	9	0.363348	3.169925	chr5	32571161	32571263	LTR|ERVL-MaLR|MLT1J1	-	chr5	32585498	32604079	SUB1|ENST00000265073.8	+	32585498,32588511,32591562,32598960,32601004	32585625,32588584,32591685,32599069,32604079	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	231822835	231822836	231822835	-	RAMPAGE_only	5	5	8	0.322976	2.750000	chr1	231822644	231823057	LTR|ERVL-MaLR|MSTB1	-	chr1	231809935	231847695	STRG.3315.1	-	231809935,231822724,231847518	231814291,231822834,231847695	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	69237176	69237188	69237185	-	RAMPAGE_only	10	10	42	1.695624	4.719349	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.595238
right_atrium_auricular_region_female_adult_53_years	chr5	78549270	78549287	78549270	-	High_confidence	3	4	7	0.282604	2.521641	chr5	78548966	78549452	LTR|ERVL-MaLR|MLT1H	-	chr5	78485214	78549151	LHFPL2|ENST00000515007.6	-	78485214,78509783,78549025	78489153,78510398,78549151	0.714286
right_atrium_auricular_region_female_adult_53_years	chr1	153119387	153119401	153119393	-	High_confidence	12	15	39	1.574508	4.141064	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112120	153119455	STRG.2190.1	-	153112120,153119352	153112752,153119455	1.000000
right_atrium_auricular_region_female_adult_53_years	chr20	50131130	50131162	50131139	-	High_confidence	23	26	103	4.158315	5.793106	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.990291
right_atrium_auricular_region_female_adult_53_years	chr13	37934549	37934559	37934558	+	High_confidence	4	4	14	0.565208	3.238901	chr13	37934381	37935273	LTR|ERV1|LTR1D	-	chr13	37934564	38048169	LINC02334|ENST00000617568.1	+	37934564,37997811,38013403,38029648,38043950	37935037,37997937,38013501,38029691,38048169	0.928571
right_atrium_auricular_region_female_adult_53_years	chr19	3062873	3062874	3062873	-	High_confidence	4	5	7	0.282604	2.584963	chr19	3062800	3062899	SINE|MIR|MIRc	+	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.857143
right_atrium_auricular_region_female_adult_53_years	chr14	102235451	102235459	102235451	-	High_confidence	7	7	20	0.807440	3.746439	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.750000
right_atrium_auricular_region_female_adult_53_years	chr5	96934346	96934354	96934346	+	High_confidence	4	4	11	0.444092	2.913977	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96934326	96998084	STRG.10756.3	+	96934326,96935993,96979137,96985079,96986538,96993014,96993816,96996389,96998013	96934499,96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998084	1.000000
right_atrium_auricular_region_female_adult_53_years	chr4	69525984	69526017	69526016	-	High_confidence	24	26	101	4.077571	4.534831	chr4	69525819	69526138	SINE|Alu|AluY	+	chr4	69480164	69526014	UGT2B4|NM_001297616.1	-	69480164,69485207,69486608,69489438,69493692,69495140,69525686	69480910,69485427,69486696,69489570,69493841,69495410,69526014	0.920792
right_atrium_auricular_region_female_adult_53_years	chr3	157122969	157123004	157123003	-	High_confidence	5	8	23	0.928556	4.186704	chr3	157122796	157123135	LTR|ERVL-MaLR|MLT1A1	-	chr3	157081666	157123004	LINC00880|ENST00000471357.1	-	157081666,157101934,157103357,157122875	157083275,157102092,157103479,157123004	0.521739
right_atrium_auricular_region_female_adult_53_years	chr14	34066141	34066150	34066149	-	High_confidence	3	3	7	0.282604	2.521641	chr14	34066144	34066686	LINE|L1|L1MC3	+	chr14	34064133	34066071	STRG.25012.1	-	34064133,34066009	34064422,34066071	0.857143
right_atrium_auricular_region_female_adult_53_years	chr10	90972990	90973058	90973005	+	RAMPAGE_only	3	3	32	1.291904	4.389898	chr10	90972948	90973217	DNA|hAT-Charlie|Charlie2a	-	chr10	90965978	90996402	STRG.19969.7	+	90965978,90981219	90980843,90996402	0.937500
right_atrium_auricular_region_female_adult_53_years	chr6	20334380	20334392	20334384	-	High_confidence	7	7	23	0.928556	3.675311	chr6	20334196	20334750	LTR|ERVL-MaLR|MLT1K	-	chr6	20331334	20334476	STRG.12105.1	-	20331334,20334133	20331525,20334476	0.913043
right_atrium_auricular_region_female_adult_53_years	chr9	129489077	129489126	129489125	+	High_confidence	14	19	71	2.866411	5.688411	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.915493
right_atrium_auricular_region_female_adult_53_years	chr19	36850345	36850372	36850371	+	High_confidence	4	5	14	0.565208	3.521641	chr19	36850362	36850429	LTR|ERV1|MER67D	-	chr19	36850360	36879572	ZNF345|ENST00000589046.1	+	36850360,36851727,36876784	36850515,36851904,36879572	0.642857
right_atrium_auricular_region_female_adult_53_years	chr2	219631638	219631682	219631638	+	High_confidence	12	13	38	1.534136	4.815623	chr2	219631665	219631820	SINE|MIR|MIRc	+	chr2	219632058	219637795	SLC4A3|ENST00000416910.1	+	219632058,219632261,219632873,219633273,219633865,219634419,219635270,219635672,219636301,219636679,219637580	219632116,219632442,219633009,219633457,219633979,219634604,219635496,219635891,219636450,219636874,219637795	0.868421
right_atrium_auricular_region_female_adult_53_years	chr19	20423697	20423704	20423701	-	RAMPAGE_only	15	15	52	2.099344	4.583998	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.826923
right_atrium_auricular_region_female_adult_53_years	chr4	79492434	79492451	79492434	+	High_confidence	4	5	18	0.726696	3.836592	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492415	79576460	LINC00989|ENST00000508174.5	+	79492415,79493151,79513784,79575140	79492623,79493585,79513902,79576460	0.944444
right_atrium_auricular_region_female_adult_53_years	chr18	28171773	28171774	28171773	-	RAMPAGE_only	10	10	10	0.403720	3.121928	chr18	28171751	28171822	SINE|MIR|MIR3	-	chr18	27950962	28177446	CDH2|NM_001792.4	-	27950962,27963356,27982943,27984999,27985527,27988523,27990096,27992654,27993499,28002996,28005848,28009716,28011845,28013682,28147672,28176962	27952359,27963521,27983083,27985233,27985761,27988666,27990350,27992840,27993637,28003169,28005993,28009872,28011992,28013909,28147784,28177446	0.900000
right_atrium_auricular_region_female_adult_53_years	chr3	11634250	11634278	11634277	-	High_confidence	3	3	9	0.363348	3.000000	chr3	11634009	11634538	LINE|L2|L2	+	chr3	11564851	11633671	STRG.6228.8	-	11564851,11601832,11633116	11565019,11602022,11633671	0.666667
right_atrium_auricular_region_female_adult_53_years	chr16	4239742	4239749	4239748	-	High_confidence	8	10	13	0.524836	3.085055	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	1.000000
right_atrium_auricular_region_female_adult_53_years	chr17	49646471	49646501	49646471	-	High_confidence	22	28	97	3.916083	4.702158	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.917526
right_atrium_auricular_region_female_adult_53_years	chr9	134373102	134373106	134373102	+	High_confidence	6	6	10	0.403720	2.947703	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134373054	134437019	STRG.18787.1	+	134373054,134401395,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134373180,134401540,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134437019	0.600000
right_atrium_auricular_region_female_adult_53_years	chr11	17375642	17375651	17375650	+	RAMPAGE_only	4	4	8	0.322976	2.521641	chr11	17370373	17376380	LTR|ERV1|HUERS-P3-int	+	chr11	17351761	17377321	NCR3LG1|NM_001202439.2	+	17351761,17356650,17367008,17368866,17372005	17352039,17357001,17367347,17368964,17377321	0.875000
right_atrium_auricular_region_female_adult_53_years	chr5	172954206	172954207	172954206	+	High_confidence	4	4	6	0.242232	2.584963	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172954236	172969718	STRG.11698.3	+	172954236,172959864,172968458,172969412	172954336,172960041,172968599,172969718	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	47610750	47610801	47610800	-	High_confidence	10	16	52	2.099344	5.162621	chr3	47610404	47610841	LINE|CR1|L3	-	chr3	47590805	47610798	SMARCC1|ENST00000492896.1	-	47590805,47610065,47610524	47590837,47610327,47610798	0.692308
right_atrium_auricular_region_female_adult_53_years	chr7	123553338	123553339	123553338	-	RAMPAGE_only	7	8	10	0.403720	2.947703	chr7	123553169	123553535	LTR|ERVL-MaLR|THE1B	-	chr7	123541095	123557455	NDUFA5|ENST00000378795.8	-	123541095,123545610,123550469,123557403	123542220,123545676,123550586,123557455	0.900000
right_atrium_auricular_region_female_adult_53_years	chr1	39026110	39026131	39026130	+	High_confidence	8	9	18	0.726696	3.734522	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.944444
right_atrium_auricular_region_female_adult_53_years	chr1	20639962	20639976	20639975	+	RAMPAGE_only	2	2	6	0.242232	2.584963	chr1	20640002	20640112	LINE|L2|L2b	+	chr1	20638128	20651316	PINK1|ENST00000492302.1	+	20638128,20644489,20645559,20648504,20650433	20639992,20644672,20645723,20649231,20651316	1.000000
right_atrium_auricular_region_female_adult_53_years	chr13	113485593	113485605	113485593	-	RAMPAGE_only	13	13	27	1.090044	4.458591	chr13	113485255	113485582	LINE|RTE-X|L4_B_Mam	-	chr13	113474196	113484190	DCUN1D2|ENST00000465938.5	-	113474196,113480574,113483839	113474254,113480743,113484190	0.629630
right_atrium_auricular_region_female_adult_53_years	chr15	42415259	42415490	42415259	-	RAMPAGE_only	65	66	308	12.434574	5.888716	chr15	42415122	42415421	SINE|Alu|AluSq2	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	0.996753
right_atrium_auricular_region_female_adult_53_years	chr1	202545977	202545978	202545977	+	RAMPAGE_only	6	6	8	0.322976	2.750000	chr1	202545787	202546325	LINE|L2|L2b	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.750000
right_atrium_auricular_region_female_adult_53_years	chr3	129559620	129559621	129559620	-	High_confidence	5	5	7	0.282604	2.521641	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	1.000000
right_atrium_auricular_region_female_adult_53_years	chr22	18149845	18149869	18149845	+	High_confidence	2	2	11	0.444092	3.277613	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
right_atrium_auricular_region_female_adult_53_years	chr6	158631135	158631152	158631135	+	RAMPAGE_only	4	4	8	0.322976	2.521641	chr6	158631108	158631267	SINE|MIR|MIRc	-	chr6	158560099	158635428	STRG.13699.2	+	158560099,158573419,158580939,158583953,158585303,158589671,158605266,158607243,158608332,158608658,158623549,158625103,158625702,158628407,158629729,158631322,158631809	158560232,158573523,158580995,158584044,158585425,158589782,158605347,158607343,158608463,158608750,158623607,158625206,158625754,158628490,158629819,158631389,158635428	0.875000
right_atrium_auricular_region_female_adult_53_years	chr14	81170412	81170414	81170412	-	High_confidence	2	4	7	0.282604	2.807355	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.714286
right_atrium_auricular_region_female_adult_53_years	chr19	46413530	46413612	46413611	-	High_confidence	50	51	394	15.906565	6.637347	chr19	46413579	46413731	LTR|Gypsy|LTR104_Mam	-	chr19	46410378	46413564	CCDC8|ENST00000307522.4	-	46410378	46413564	0.992386
right_atrium_auricular_region_female_adult_53_years	chr1	1655473	1655478	1655473	-	RAMPAGE_only	3	4	9	0.363348	3.000000	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.555556
right_atrium_auricular_region_female_adult_53_years	chr1	202582667	202582799	202582750	+	RAMPAGE_only	7	7	46	1.857112	4.986189	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.978261
right_atrium_auricular_region_female_adult_53_years	chrX	15607173	15607187	15607186	-	High_confidence	9	9	19	0.767068	4.058814	chrX	15606866	15607460	LTR|ERV1|LTR10C	+	chrX	15561035	15607186	STRG.35186.1	-	15561035,15564023,15566252,15567725,15570294,15571623,15572200,15573366,15575665,15578088,15581220,15585474,15587752,15589343,15591712,15592228,15594844,15600725,15607136	15562013,15564218,15566369,15567826,15570353,15571796,15572323,15573465,15575810,15578315,15581390,15585572,15587858,15589456,15591856,15592322,15595003,15601014,15607186	0.842105
right_atrium_auricular_region_female_adult_53_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	10	11	11	0.444092	3.121928	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.818182
right_atrium_auricular_region_female_adult_53_years	chr2	10869516	10869530	10869516	+	RAMPAGE_only	2	2	8	0.322976	2.750000	chr2	10869536	10869697	SINE|MIR|MIRb	+	chr2	10878266	10885118	LOC101929733|NR_110575.1	+	10878266,10884833	10878444,10885118	0.625000
right_atrium_auricular_region_female_adult_53_years	chr19	33395177	33395191	33395190	-	High_confidence	5	5	12	0.484464	3.022055	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	1.000000
right_atrium_auricular_region_female_adult_53_years	chr10	122029048	122029064	122029057	+	RAMPAGE_only	8	9	24	0.968928	3.663533	chr10	122029026	122029558	LINE|L1|L1MD	-	chr10	122021992	122083007	TACC2|ENST00000491540.1	+	122021992,122033093,122050437,122082655	122022014,122033153,122050550,122083007	0.875000
right_atrium_auricular_region_female_adult_53_years	chr6	6734925	6734926	6734925	-	RAMPAGE_only	6	6	8	0.322976	2.750000	chr6	6734518	6734983	LINE|L2|L2	+	chr6	6704670	6739030	AL031123.1|ENST00000648205.1	-	6704670,6710871,6711696,6738908	6705078,6711059,6711858,6739030	0.625000
right_atrium_auricular_region_female_adult_53_years	chr1	149197691	149197694	149197691	-	RAMPAGE_only	8	8	19	0.767068	3.932138	chr1	149197558	149197766	LINE|L2|L2c	+	chr1	149194390	149285819	STRG.2132.5	-	149194390,149198360,149201013,149240376,149261639,149266968,149285453	149198171,149198484,149201090,149240487,149261791,149267024,149285819	1.000000
right_atrium_auricular_region_female_adult_53_years	chr7	103353930	103353957	103353956	+	High_confidence	10	10	16	0.645952	3.250000	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	1.000000
right_atrium_auricular_region_female_adult_53_years	chr12	46243291	46243298	46243291	-	RAMPAGE_only	3	3	9	0.363348	2.750000	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.888889
right_atrium_auricular_region_female_adult_53_years	chrX	63432456	63432460	63432456	-	High_confidence	4	4	11	0.444092	3.277613	chrX	63428375	63433922	LTR|ERV1|LTR46-int	-	chrX	63426559	63431612	LINC01278|ENST00000608623.1	-	63426559	63431612	0.909091
right_atrium_auricular_region_female_adult_53_years	chr3	123402043	123402076	123402075	-	RAMPAGE_only	4	6	12	0.484464	3.584963	chr3	123402013	123402284	LINE|CR1|X7A_LINE	+	chr3	123332594	123404283	ADCY5|ENST00000476455.1	-	123332594,123347781,123352431,123367899,123404203	123332675,123347903,123352581,123368046,123404283	0.666667
right_atrium_auricular_region_female_adult_53_years	chr9	113484732	113484733	113484732	+	RAMPAGE_only	19	24	25	1.009300	4.017894	chr9	113484629	113484751	SINE|MIR|MIR	+	chr9	113501370	113507509	RGS3|ENST00000466314.5	+	113501370,113505017,113505441,113506387,113507286	113501434,113505092,113505523,113506493,113507509	0.520000
right_atrium_auricular_region_female_adult_53_years	chr1	200411683	200411687	200411683	+	High_confidence	9	10	19	0.767068	4.037401	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411693	200478360	AC104461.1|ENST00000647823.1	+	200411693,200444617,200472040,200473908,200477967	200411962,200444945,200472119,200474186,200478360	0.894737
right_atrium_auricular_region_female_adult_53_years	chr9	696330	696331	696330	+	RAMPAGE_only	4	4	7	0.282604	2.807355	chr9	696299	696580	LINE|L2|L2c	-	chr9	693670	746102	STRG.17141.4	+	693670,710803,730050,731157,732377,734747,738284,740791,742204,744490,745172	693786,713464,730248,731266,732617,734835,738504,740934,742405,744589,746102	0.571429
right_atrium_auricular_region_female_adult_53_years	chr6	92181303	92181304	92181303	-	RAMPAGE_only	135	139	151	6.096171	6.567768	chr6	92181053	92181476	LTR|ERVL-MaLR|MLT1D	-	chr6	92002609	92180156	AL590814.1|ENST00000647772.1	-	92002609,92016813,92025328,92027890,92180124	92004666,92017127,92025392,92028143,92180156	0.582781
right_atrium_auricular_region_female_adult_53_years	chr17	77127872	77127877	77127872	+	High_confidence	22	22	37	1.493764	4.715814	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.810811
right_atrium_auricular_region_female_adult_53_years	chr9	62376604	62376633	62376632	+	High_confidence	3	3	11	0.444092	3.321928	chr9	62376600	62376639	SINE|MIR|MIRb	+	chr9	62376516	62434385	FGF7P6|ENST00000452826.2	+	62376516,62432875	62376813,62434385	0.818182
right_atrium_auricular_region_female_adult_53_years	chr1	214312633	214312655	214312654	+	RAMPAGE_only	9	9	24	0.968928	4.262692	chr1	214312302	214313119	LINE|L2|L2a	-	chr1	214327493	214331070	SMYD2|ENST00000484459.1	+	214327493,214330167,214330949	214327724,214330278,214331070	0.583333
right_atrium_auricular_region_female_adult_53_years	chr20	38985938	38985984	38985964	+	High_confidence	89	91	470	18.974836	6.523640	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38985724	39038636	STRG.33543.4	+	38985724,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38986012,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39038636	0.965957
right_atrium_auricular_region_female_adult_53_years	chr16	87381453	87381470	87381469	-	RAMPAGE_only	5	5	13	0.524836	3.418296	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87330810	87383748	STRG.28522.1	-	87330810,87333885,87335303,87336154,87342876,87343597,87347173,87358410,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87358497,87360366,87383748	0.615385
right_atrium_auricular_region_female_adult_53_years	chr16	77861821	77861822	77861821	+	RAMPAGE_only	8	8	9	0.363348	2.750000	chr16	77861676	77862043	LTR|ERVL|LTR16C	+	chr16	77788563	77980107	VAT1L|NM_020927.2	+	77788563,77816920,77825245,77862747,77876369,77879168,77884607,77971849,77977596	77788915,77817050,77825461,77862890,77876473,77879224,77884802,77971933,77980107	0.888889
right_atrium_auricular_region_female_adult_53_years	chr2	222600026	222600057	222600026	-	RAMPAGE_only	2	2	8	0.322976	2.521641	chr2	222599989	222600062	LINE|RTE-BovB|MamRTE1	-	chr2	222570535	222656337	FARSB|ENST00000281828.6	-	222570535,222599927,222613810,222619644,222623649,222624271,222624713,222628836,222630112,222631603,222633198,222634390,222639579,222640861,222642850,222648739,222656015	222572022,222600083,222613928,222619737,222623730,222624479,222624775,222628888,222630174,222631674,222633307,222634541,222639695,222640931,222643005,222648795,222656337	0.875000
right_atrium_auricular_region_female_adult_53_years	chr10	80176123	80176132	80176131	-	RAMPAGE_only	4	6	13	0.524836	2.855389	chr10	80176083	80176485	LINE|L1|L1ME4b	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	0.692308
right_atrium_auricular_region_female_adult_53_years	chr4	182738443	182738446	182738443	+	RAMPAGE_only	12	12	19	0.767068	3.794653	chr4	182738424	182738481	SINE|tRNA|LFSINE_Vert	+	chr4	182680323	182755353	TENM3|ENST00000502950.1	+	182680323,182680542,182681813,182688165,182714086,182728964,182730199,182730877,182736807,182738400,182743169,182744142,182751799,182753449,182754384	182680349,182680737,182682014,182688351,182714233,182729181,182730319,182731139,182737075,182738544,182743419,182744163,182752032,182753604,182755353	0.947368
right_atrium_auricular_region_female_adult_53_years	chr19	17075172	17075173	17075172	-	High_confidence	5	6	8	0.322976	2.521641	chr19	17075045	17075226	SINE|MIR|MIRb	-	chr19	17049765	17075200	HAUS8|ENST00000593360.1	-	17049765,17052824,17055860,17058548,17058810,17059556,17059996,17062697,17069030,17073273	17050176,17052966,17056002,17058707,17058876,17059651,17060092,17062779,17069086,17075200	0.875000
right_atrium_auricular_region_female_adult_53_years	chr17	4736349	4736362	4736361	-	High_confidence	4	8	11	0.444092	2.921928	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.909091
right_atrium_auricular_region_female_adult_53_years	chr11	112776886	112776894	112776889	-	High_confidence	5	5	16	0.645952	3.773557	chr11	112776698	112776850	SINE|MIR|MIRb	-	chr11	112774500	112776668	STRG.21960.1	-	112774500,112776036,112776521	112774932,112776145,112776668	0.750000
right_atrium_auricular_region_female_adult_53_years	chr5	150640301	150640348	150640347	+	High_confidence	8	10	24	0.968928	4.220176	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.875000
right_atrium_auricular_region_female_adult_53_years	chr16	75248150	75248151	75248150	-	High_confidence	11	11	11	0.444092	3.277613	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	1.000000
right_atrium_auricular_region_female_adult_53_years	chr7	6590283	6590300	6590283	+	High_confidence	2	2	9	0.363348	2.947703	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.555556
right_atrium_auricular_region_female_adult_53_years	chr5	41456595	41456609	41456608	-	RAMPAGE_only	5	6	10	0.403720	3.169925	chr5	41456571	41456939	LTR|ERVL-MaLR|MLT1A0	+	chr5	41306953	41510601	PLCXD3|ENST00000377801.7	-	41306953,41381825,41510423	41313770,41382534,41510601	0.900000
right_atrium_auricular_region_female_adult_53_years	chr3	45034840	45034842	45034840	+	RAMPAGE_only	4	6	9	0.363348	3.000000	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	0.888889
right_atrium_auricular_region_female_adult_53_years	chr3	197299316	197299330	197299316	-	High_confidence	11	11	23	0.928556	3.849224	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	1.000000
right_atrium_auricular_region_female_adult_53_years	chr7	6590246	6590263	6590262	+	High_confidence	3	3	7	0.282604	2.807355	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	44439896	44439906	44439896	-	High_confidence	3	4	12	0.484464	3.277613	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421126	44439917	C3orf86|ENST00000636468.1	-	44421126,44439796	44421813,44439917	0.500000
right_atrium_auricular_region_female_adult_53_years	chr11	72758533	72758595	72758552	-	RAMPAGE_only	6	9	31	1.251532	4.506891	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72793657	STARD10|ENST00000543304.5	-	72754728,72755700,72757766,72758529,72759233,72780974,72792874,72793409	72755142,72755753,72757884,72758633,72759381,72781294,72792982,72793657	0.967742
right_atrium_auricular_region_female_adult_53_years	chr14	38948236	38948252	38948236	-	High_confidence	4	4	18	0.726696	3.947703	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38838888	38948237	LINC00639|ENST00000556116.1	-	38838888,38941519,38948177	38839204,38941695,38948237	0.888889
right_atrium_auricular_region_female_adult_53_years	chr4	47831339	47831341	47831339	+	High_confidence	103	132	166	6.701751	6.682722	chr4	47831064	47831545	LINE|RTE-BovB|MamRTE1	+	chr4	47831344	47896848	LOC101927179|NR_125880.1	+	47831344,47875176,47896541	47831508,47875331,47896848	0.584337
right_atrium_auricular_region_female_adult_53_years	chr15	25346017	25346034	25346023	-	High_confidence	66	67	203	8.195514	6.279450	chr15	25345979	25347018	LINE|L1|L1ME2	+	chr15	25333727	25346031	UBE3A|ENST00000636667.1	-	25333727,25340084,25345979	25339257,25340228,25346031	0.985222
right_atrium_auricular_region_female_adult_53_years	chr3	187469641	187469723	187469703	-	High_confidence	14	18	52	2.099344	3.714298	chr3	187468600	187471591	LTR|ERV1|HERVH-int	-	chr3	187466419	187469704	STRG.8157.1	-	187466419,187469473	187466660,187469704	0.923077
right_atrium_auricular_region_female_adult_53_years	chr8	39083039	39083066	39083065	+	RAMPAGE_only	5	6	12	0.484464	3.022055	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.916667
right_atrium_auricular_region_female_adult_53_years	chr1	184792240	184792344	184792284	-	RAMPAGE_only	19	19	111	4.481291	5.805376	chr1	184791959	184792240	SINE|Alu|AluJo	-	chr1	184791029	184974550	FAM129A|ENST00000367511.3	-	184791029,184798078,184803584,184805945,184808073,184818637,184823166,184823637,184831846,184884632,184890107,184894074,184899178,184974301	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184823742,184831962,184884800,184890222,184894206,184899309,184974550	0.990991
right_atrium_auricular_region_female_adult_53_years	chr7	131503951	131504076	131504040	-	RAMPAGE_only	39	43	229	9.245186	5.255234	chr7	131503890	131504051	SINE|MIR|MIR3	+	chr7	131500261	131556563	PODXL|ENST00000446198.5	-	131500261,131505867,131506259,131506578,131508950,131510827,131556259	131504508,131506035,131506321,131506726,131509585,131511433,131556563	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	192567024	192567092	192567061	+	High_confidence	20	25	116	4.683151	6.300833	chr3	192566991	192567105	SINE|MIR|MIRc	-	chr3	192566982	192607772	STRG.8201.1	+	192566982,192567514,192604438	192567171,192567624,192607772	0.681034
right_atrium_auricular_region_female_adult_53_years	chr21	28090313	28090340	28090339	+	High_confidence	6	6	19	0.767068	3.530493	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.947368
right_atrium_auricular_region_female_adult_53_years	chrX	5726324	5726325	5726324	-	High_confidence	30	34	40	1.614880	4.384904	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.925000
right_atrium_auricular_region_female_adult_53_years	chr10	20818704	20818705	20818704	-	High_confidence	11	11	13	0.524836	3.180833	chr10	20818659	20818779	LINE|L2|L2b	+	chr10	20813739	20819480	NEBL|ENST00000481592.5	-	20813739,20815624,20817597,20818703,20819423	20814043,20815717,20817692,20818834,20819480	0.615385
right_atrium_auricular_region_female_adult_53_years	chr1	54413473	54413493	54413473	-	High_confidence	2	3	6	0.242232	2.584963	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54243236	54413479	SSBP3|ENST00000525990.1	-	54243236,54251615,54251793,54257126,54281437,54401860,54404575,54404857,54413355	54243299,54251692,54251860,54257186,54281527,54401945,54404637,54404930,54413479	0.500000
right_atrium_auricular_region_female_adult_53_years	chr15	99708882	99708889	99708882	+	RAMPAGE_only	9	9	21	0.847812	3.884184	chr15	99708810	99709549	LINE|L2|L2a	-	chr15	99706594	99715962	MEF2A|ENST00000561125.2	+	99706594,99710633,99712389,99715467	99706855,99710760,99712835,99715962	0.857143
right_atrium_auricular_region_female_adult_53_years	chr3	157089672	157089694	157089677	+	High_confidence	5	5	20	0.807440	3.932138	chr3	157089613	157089857	SINE|MIR|MIRb	+	chr3	157089880	157101135	LINC00881|NR_034008.1	+	157089880,157099482,157100685	157090122,157099581,157101135	0.900000
right_atrium_auricular_region_female_adult_53_years	chrX	155719045	155719057	155719045	-	RAMPAGE_only	6	6	14	0.565208	3.392747	chrX	155718901	155722240	LINE|L1|L1M1	+	chrX	155489010	155612961	TMLHE|NM_018196.3	-	155489010,155492356,155506897,155511672,155513985,155524455,155545095,155612791	155491666,155492495,155507134,155511792,155514265,155524632,155545277,155612961	0.714286
right_atrium_auricular_region_female_adult_53_years	chr3	122453876	122453909	122453876	-	RAMPAGE_only	2	4	12	0.484464	3.251629	chr3	122453523	122453828	SINE|Alu|AluSg	-	chr3	122425679	122459885	KPNA1|ENST00000470904.5	-	122425679,122427537,122433660,122437169,122442037,122449573,122451533,122451975,122453869,122457725,122459438	122427172,122427716,122433788,122437295,122442116,122449737,122451633,122452064,122454001,122457848,122459885	1.000000
right_atrium_auricular_region_female_adult_53_years	chr6	31053448	31053449	31053448	+	High_confidence	8	9	9	0.363348	2.750000	chr6	31053266	31053607	LTR|ERVL-MaLR|THE1A	+	chr6	31053449	31059890	HCG22|NR_003948.2	+	31053449,31054099,31055709,31059407	31053531,31054516,31056910,31059890	0.888889
right_atrium_auricular_region_female_adult_53_years	chr16	30445873	30445877	30445873	-	High_confidence	48	62	89	3.593107	5.632790	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.966292
right_atrium_auricular_region_female_adult_53_years	chr3	193614814	193614855	193614814	+	High_confidence	3	3	24	0.968928	3.470176	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	1.000000
right_atrium_auricular_region_female_adult_53_years	chr11	8771791	8771794	8771791	-	RAMPAGE_only	3	3	7	0.282604	2.584963	chr11	8771676	8772009	LTR|ERVL-MaLR|MSTD	-	chr11	8730856	8774301	ST5|ENST00000533681.5	-	8730856,8750620,8774121	8731209,8750725,8774301	0.714286
right_atrium_auricular_region_female_adult_53_years	chr9	38650188	38650222	38650216	+	High_confidence	20	27	89	3.593107	5.518853	chr9	38649688	38650217	LTR|ERVL-MaLR|MLT1F2	-	chr9	38650256	38662717	AL591543.1|ENST00000642095.1	+	38650256,38658688	38650376,38662717	0.966292
right_atrium_auricular_region_female_adult_53_years	chr5	102756090	102756096	102756095	-	High_confidence	3	3	7	0.282604	2.584963	chr5	102756006	102756131	SINE|MIR|MIRc	+	chr5	102712945	102756089	STRG.10860.1	-	102712945,102755663	102713882,102756089	0.571429
right_atrium_auricular_region_female_adult_53_years	chr5	40982326	40982558	40982408	+	RAMPAGE_only	22	22	205	8.276258	5.984176	chr5	40982142	40982442	SINE|Alu|AluSx1	-	chr5	40909496	40982939	C7|NM_000587.2	+	40909496,40928579,40931063,40934324,40936337,40937551,40945197,40947601,40949903,40955386,40958032,40959448,40962084,40964740,40972402,40976749,40979724,40981391	40909616,40928635,40931139,40934466,40936485,40937690,40945368,40947845,40950014,40955553,40958261,40959620,40962172,40964873,40972594,40976840,40979909,40982939	0.975610
right_atrium_auricular_region_female_adult_53_years	chr15	62894572	62894611	62894596	+	High_confidence	24	24	72	2.906783	5.386503	chr15	62894534	62894826	SINE|Alu|AluSx3	+	chr15	62894593	62899543	STRG.26655.2	+	62894593,62898650	62894717,62899543	0.958333
right_atrium_auricular_region_female_adult_53_years	chr3	49468646	49468670	49468669	+	High_confidence	4	4	11	0.444092	3.095795	chr3	49468531	49468836	SINE|Alu|AluSx1	-	chr3	49468702	49535618	DAG1|NM_001177643.2	+	49468702,49510418,49530796	49469055,49510819,49535618	1.000000
right_atrium_auricular_region_female_adult_53_years	chr22	42721166	42721167	42721166	-	High_confidence	49	49	51	2.058972	4.248675	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692121	42721182	STRG.34932.5	-	42692121,42695490,42721164	42693997,42695631,42721182	0.960784
right_atrium_auricular_region_female_adult_53_years	chr1	41159757	41159771	41159757	-	High_confidence	3	3	8	0.322976	2.521641	chr1	41159678	41159745	SINE|MIR|MIRb	-	chr1	41028191	41159871	SCMH1|ENST00000456518.3	-	41028191,41028583,41037361,41046406,41048689,41070594,41075218,41142877,41159724	41028319,41028726,41037541,41046598,41048890,41070721,41075451,41143112,41159871	0.500000
right_atrium_auricular_region_female_adult_53_years	chr5	92329187	92329188	92329187	+	High_confidence	8	8	8	0.322976	3.000000	chr5	92329090	92329219	LINE|L2|L2a	-	chr5	92329229	92332584	AC114316.1|ENST00000511323.1	+	92329229,92332448	92329371,92332584	0.500000
right_atrium_auricular_region_female_adult_53_years	chr11	72111424	72111445	72111424	-	High_confidence	2	2	9	0.363348	3.000000	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.777778
right_atrium_auricular_region_female_adult_53_years	chr18	46087012	46087066	46087042	-	High_confidence	19	19	52	2.099344	5.203856	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.730769
right_atrium_auricular_region_female_adult_53_years	chr1	148900903	148900910	148900903	+	RAMPAGE_only	3	3	9	0.363348	2.947703	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148889783	149024552	STRG.2123.3	+	148889783,148929196,148931799,148932112,148937746,148960653,148961836,148962195,148962427,148965483,148966542,148966838,148967725,148968835,148972179,148972510,148974513,148977936,148978277,148979736,148981269,148991884,148998142,149001590,149002849,149003610,149004908,149007200,149008443,149009567,149010442,149012590,149016298,149017747,149018541,149020146,149021028,149024444	148889894,148929273,148931923,148932288,148937864,148960785,148961956,148962288,148962640,148965642,148966656,148966976,148967905,148969030,148972344,148972592,148974605,148978053,148978415,148979849,148981397,148991973,148998375,149001696,149003042,149003730,149005437,149007436,149008495,149009791,149010595,149012776,149016550,149017879,149018661,149020336,149021153,149024552	1.000000
right_atrium_auricular_region_female_adult_53_years	chr19	9140390	9140428	9140427	+	High_confidence	20	20	91	3.673851	5.893791	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.890110
right_atrium_auricular_region_female_adult_53_years	chr10	122127024	122127025	122127024	+	High_confidence	47	47	55	2.220460	5.458591	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.763636
right_atrium_auricular_region_female_adult_53_years	chr8	116648847	116648893	116648864	-	RAMPAGE_only	7	7	29	1.170788	4.208410	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.931034
right_atrium_auricular_region_female_adult_53_years	chr16	81664343	81664349	81664343	+	RAMPAGE_only	4	5	10	0.403720	2.947703	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.900000
right_atrium_auricular_region_female_adult_53_years	chr3	93879163	93879168	93879163	-	RAMPAGE_only	2	2	7	0.282604	2.584963	chr3	93878990	93879151	SINE|MIR|MIRb	-	chr3	93873108	93958754	PROS1|ENST00000648381.1	-	93873108,93876965,93879162,93884727,93886335,93892932,93896575,93898447,93900803,93905783,93906020,93910618,93924239,93927249,93958510	93874405,93877191,93879314,93884896,93886503,93893122,93896691,93898569,93900929,93905915,93906143,93910705,93924264,93927407,93958754	0.857143
right_atrium_auricular_region_female_adult_53_years	chr1	116390239	116390364	116390289	+	RAMPAGE_only	8	8	96	3.875711	5.407955	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.989583
right_atrium_auricular_region_female_adult_53_years	chr5	66440355	66440505	66440388	-	High_confidence	291	339	1631	65.846720	6.836008	chr5	66440146	66440632	LTR|ERVL-MaLR|MLT1F1	+	chr5	66345011	66440531	STRG.10418.1	-	66345011,66440146	66351228,66440531	0.786021
right_atrium_auricular_region_female_adult_53_years	chr1	63487956	63487987	63487958	+	High_confidence	11	16	26	1.049672	4.183465	chr1	63487767	63487999	DNA|TcMar-Tigger|Tigger3b	-	chr1	63487967	63518415	STRG.1255.1	+	63487967,63507319,63517755	63488277,63507607,63518415	0.884615
right_atrium_auricular_region_female_adult_53_years	chr3	138396392	138396396	138396392	+	RAMPAGE_only	21	21	58	2.341576	5.193703	chr3	138396211	138396395	SINE|MIR|MIR	-	chr3	138349261	138402362	MRAS|ENST00000474559.1	+	138349261,138372865,138397323,138398468,138400533,138402169	138349379,138373076,138397477,138398568,138400613,138402362	0.793103
right_atrium_auricular_region_female_adult_53_years	chr15	52548915	52548916	52548915	-	RAMPAGE_only	4	4	7	0.282604	2.584963	chr15	52548772	52548988	DNA|TcMar-Tigger|MamRep434	-	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	0.857143
right_atrium_auricular_region_female_adult_53_years	chr10	95437800	95437822	95437815	-	RAMPAGE_only	26	26	70	2.826039	5.271522	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.671429
right_atrium_auricular_region_female_adult_53_years	chr8	12522813	12522814	12522813	+	High_confidence	5	5	8	0.322976	2.807355	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12522586	12567269	STRG.15927.1	+	12522586,12530942,12565885	12522846,12531031,12567269	0.875000
right_atrium_auricular_region_female_adult_53_years	chr8	116730249	116730291	116730249	-	RAMPAGE_only	15	15	35	1.413020	4.764858	chr8	116730180	116730513	DNA|hAT-Charlie|MER1B	+	chr8	116648805	116755784	EIF3H|ENST00000518949.5	-	116648805,116655855,116657214,116658812,116697052,116755665	116648926,116656005,116657314,116658980,116697237,116755784	0.628571
right_atrium_auricular_region_female_adult_53_years	chr12	16353884	16353885	16353884	+	High_confidence	56	58	74	2.987527	4.762517	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.648649
right_atrium_auricular_region_female_adult_53_years	chr17	76740508	76740518	76740508	+	RAMPAGE_only	6	6	15	0.605580	3.521641	chr17	76740464	76740701	SINE|MIR|MIR	+	chr17	76742190	76769840	MFSD11|ENST00000585584.5	+	76742190,76743397,76744321,76745392,76754046,76767385,76769745	76742273,76743456,76744466,76745439,76754087,76767451,76769840	0.533333
right_atrium_auricular_region_female_adult_53_years	chr6	92181486	92181528	92181486	-	High_confidence	8	8	22	0.888184	3.558519	chr6	92181053	92181476	LTR|ERVL-MaLR|MLT1D	-	chr6	92181063	92181476	STRG.13067.1	-	92181063	92181476	0.863636
right_atrium_auricular_region_female_adult_53_years	chr16	10531311	10531319	10531318	-	RAMPAGE_only	4	6	12	0.484464	3.277613	chr16	10530980	10531270	SINE|Alu|AluSx1	-	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.916667
right_atrium_auricular_region_female_adult_53_years	chr4	143350380	143350401	143350380	+	RAMPAGE_only	6	8	34	1.372648	4.572469	chr4	143350396	143350702	SINE|Alu|AluSp	+	chr4	143337177	143438041	GAB1|ENST00000514639.5	+	143337177,143415476,143433490,143434087,143437998	143337260,143415771,143433716,143434168,143438041	0.882353
right_atrium_auricular_region_female_adult_53_years	chr8	38825317	38825361	38825360	+	RAMPAGE_only	22	22	83	3.350875	5.381021	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.975904
right_atrium_auricular_region_female_adult_53_years	chr14	77076158	77076194	77076188	-	High_confidence	17	18	49	1.978228	5.194236	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77073817	77076192	STRG.25604.1	-	77073817,77076104	77074598,77076192	0.653061
right_atrium_auricular_region_female_adult_53_years	chr11	123061144	123061322	123061296	-	High_confidence	28	28	240	9.689278	6.025332	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.983333
right_atrium_auricular_region_female_adult_53_years	chr11	47339651	47339740	47339651	-	RAMPAGE_only	52	59	352	14.210941	5.389911	chr11	47339580	47339635	SINE|MIR|MIR3	-	chr11	47331396	47352702	MYBPC3|ENST00000545968.5	-	47331396,47331844,47332071,47332565,47332813,47333193,47333556,47333921,47335041,47335876,47337390,47337689,47338519,47339323,47339650,47341002,47341137,47341990,47342577,47342829,47343020,47343259,47343491,47346206,47346626,47347026,47347425,47347650,47347856,47348423,47349773,47350013,47350501,47351238,47352622	47331716,47331881,47332258,47332702,47332973,47333333,47333752,47334010,47335209,47336011,47337579,47337794,47338679,47339404,47339790,47341032,47341244,47342156,47342744,47342935,47343145,47343262,47343624,47346370,47346644,47347029,47347479,47347680,47347905,47348541,47349922,47350112,47350615,47351505,47352702	0.980114
right_atrium_auricular_region_female_adult_53_years	chr11	46274411	46274427	46274426	-	High_confidence	4	4	8	0.322976	2.521641	chr11	46274366	46274400	SINE|MIR|MIR1_Amn	-	chr11	46256354	46274547	LINC02489|ENST00000527239.1	-	46256354,46274380	46256541,46274547	0.750000
right_atrium_auricular_region_female_adult_53_years	chr22	17917782	17917783	17917782	-	RAMPAGE_only	11	11	17	0.686324	3.875000	chr22	17917754	17917859	LINE|L2|L2a	+	chr22	17834334	17906886	MICAL3|NM_001122731.2	-	17834334,17841821,17864898,17865923,17871836,17885877,17887169,17887322,17889033,17891484,17893807,17895283,17896245,17896723,17899447,17900841,17901877,17902630,17904631,17906548	17834549,17842017,17864986,17866012,17872023,17886051,17887232,17887435,17889230,17891632,17893904,17895410,17896361,17896981,17899548,17900997,17901979,17902747,17904839,17906886	0.764706
right_atrium_auricular_region_female_adult_53_years	chr12	45292676	45292709	45292685	+	High_confidence	66	103	294	11.869366	6.704006	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.959184
right_atrium_auricular_region_female_adult_53_years	chr15	57451517	57451576	57451564	+	RAMPAGE_only	24	25	76	3.068271	4.758540	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
right_atrium_auricular_region_female_adult_53_years	chr20	18794077	18794086	18794077	+	High_confidence	15	15	31	1.251532	4.373551	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
right_atrium_auricular_region_female_adult_53_years	chr16	2757853	2757915	2757871	+	High_confidence	7	7	41	1.655252	4.785152	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.829268
right_atrium_auricular_region_female_adult_53_years	chr6	82138389	82138412	82138411	-	RAMPAGE_only	3	3	6	0.242232	2.584963	chr6	82138015	82138960	LINE|L2|L2c	+	chr6	81845184	81933480	LINC02542|ENST00000418567.1	-	81845184,81928856,81933428	81845909,81928901,81933480	0.666667
right_atrium_auricular_region_female_adult_53_years	chr16	58435716	58435740	58435739	+	RAMPAGE_only	8	9	18	0.726696	3.503258	chr16	58435719	58435927	LTR|ERVL|LTR33	-	chr16	58421338	58441040	STRG.28198.1	+	58421338,58433809,58435691,58437155,58440544	58421421,58433948,58435823,58440478,58441040	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	50230995	50230996	50230995	+	High_confidence	17	17	17	0.686324	3.404543	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	231847665	231847707	231847665	-	High_confidence	804	816	1435	57.933809	7.093830	chr1	231847541	231847935	LINE|L2|L2a	+	chr1	231809935	231847695	STRG.3315.2	-	231809935,231822679,231847518	231814291,231822834,231847695	0.950523
right_atrium_auricular_region_female_adult_53_years	chr17	63691843	63691861	63691843	+	RAMPAGE_only	5	5	17	0.686324	3.734522	chr17	63691879	63692027	SINE|MIR|MIRc	+	chr17	63622709	63693874	MAP3K3|ENST00000577395.5	+	63622709,63632680,63646033,63652556,63657793,63666939,63681765,63685516,63688526,63688788,63689543,63690263,63691101,63691732,63692241,63693548	63622763,63632802,63646074,63652656,63657907,63667060,63681899,63685578,63688594,63688881,63689735,63690412,63691233,63691862,63692419,63693874	0.705882
right_atrium_auricular_region_female_adult_53_years	chr5	151687237	151687251	151687250	-	High_confidence	11	14	33	1.332276	4.518397	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.939394
right_atrium_auricular_region_female_adult_53_years	chr8	61578141	61578142	61578141	+	High_confidence	116	120	121	4.885011	5.029150	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.975207
right_atrium_auricular_region_female_adult_53_years	chr12	19775452	19775453	19775452	+	High_confidence	9	10	12	0.484464	3.095795	chr12	19775357	19775902	LINE|L1|L1PBa1	-	chr12	19775450	20009937	AC024901.1|ENST00000535764.1	+	19775450,19923197,19944378,20008644,20009720	19775603,19923256,19944544,20008767,20009937	0.666667
right_atrium_auricular_region_female_adult_53_years	chr8	143039246	143039267	143039246	+	High_confidence	4	4	16	0.645952	3.773557	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.875000
right_atrium_auricular_region_female_adult_53_years	chr4	44867433	44867456	44867455	+	High_confidence	139	147	337	13.605361	5.866527	chr4	44864689	44868696	LINE|L1|L1PA16	-	chr4	44867432	44985571	STRG.8749.1	+	44867432,44871805,44892957,44985249	44867501,44871902,44893082,44985571	0.970326
right_atrium_auricular_region_female_adult_53_years	chr1	231854105	231854145	231854144	+	RAMPAGE_only	6	6	14	0.565208	3.807355	chr1	231854145	231854317	SINE|MIR|MIRb	+	chr1	231626836	232009654	DISC1|ENST00000422590.6	+	231626836,231693829,231701954,231749925,231767139,231770834,231795241,231800107,231818328,231958827,232008784	231626934,231694805,231702024,231750076,231767269,231771070,231795296,231800210,231818517,231958888,232009654	0.500000
right_atrium_auricular_region_female_adult_53_years	chr4	155496160	155496198	155496197	+	High_confidence	2	2	7	0.282604	2.521641	chr4	155496083	155496205	SINE|Alu|AluSx3	-	chr4	155495905	155496512	STRG.9672.1	+	155495905	155496512	0.571429
right_atrium_auricular_region_female_adult_53_years	chr8	18076355	18076356	18076355	-	RAMPAGE_only	4	4	7	0.282604	2.584963	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18056461	18084091	ASAH1|ENST00000637609.1	-	18056461,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18069791,18071299,18075540,18083980	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18067298,18069878,18071390,18075587,18084091	0.571429
right_atrium_auricular_region_female_adult_53_years	chr16	15740061	15740078	15740077	-	RAMPAGE_only	6	6	10	0.403720	3.321928	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	1.000000
right_atrium_auricular_region_female_adult_53_years	chr19	58306104	58306189	58306146	+	High_confidence	4	4	27	1.090044	4.152493	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.518519
right_atrium_auricular_region_female_adult_53_years	chr1	162781388	162781471	162781425	+	RAMPAGE_only	8	10	43	1.735996	4.489877	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	51403428	51403433	51403428	-	RAMPAGE_only	9	9	20	0.807440	3.892407	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.950000
right_atrium_auricular_region_female_adult_53_years	chr1	89272838	89272883	89272867	-	High_confidence	7	7	47	1.897484	5.027889	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	1.000000
right_atrium_auricular_region_female_adult_53_years	chr18	31227718	31227731	31227730	-	High_confidence	11	11	19	0.767068	3.997670	chr18	31227706	31227868	LTR|ERVL-MaLR|MLT1J	-	chr18	31124515	31227726	STRG.30723.3	-	31124515,31131593,31132567,31133890,31134571,31139747,31140041,31141998,31143656,31145610,31148497,31154773,31156042,31157370,31159444,31162531,31227437	31130711,31131842,31132689,31134130,31134784,31139890,31140301,31142184,31143791,31145777,31148642,31154929,31156162,31157573,31159529,31162848,31227726	0.947368
right_atrium_auricular_region_female_adult_53_years	chr3	15341379	15341380	15341379	-	High_confidence	5	6	7	0.282604	2.584963	chr3	15341159	15341407	LINE|L2|L2a	+	chr3	15255649	15341368	SH3BP5|ENST00000408919.7	-	15255649,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341368	0.714286
right_atrium_auricular_region_female_adult_53_years	chr1	155478035	155478037	155478036	-	RAMPAGE_only	3	5	8	0.322976	2.521641	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.875000
right_atrium_auricular_region_female_adult_53_years	chr16	66408519	66408539	66408519	+	High_confidence	5	5	14	0.565208	3.546594	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.857143
right_atrium_auricular_region_female_adult_53_years	chr13	113187330	113187344	113187343	-	High_confidence	4	4	10	0.403720	2.947703	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.900000
right_atrium_auricular_region_female_adult_53_years	chr2	240022172	240022280	240022181	-	RAMPAGE_only	21	21	120	4.844639	4.312655	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.991667
right_atrium_auricular_region_female_adult_53_years	chr1	184792063	184792159	184792141	-	RAMPAGE_only	6	6	56	2.260832	5.146292	chr1	184791959	184792240	SINE|Alu|AluJo	-	chr1	184791029	184974550	FAM129A|ENST00000367511.3	-	184791029,184798078,184803584,184805945,184808073,184818637,184823166,184823637,184831846,184884632,184890107,184894074,184899178,184974301	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184823742,184831962,184884800,184890222,184894206,184899309,184974550	1.000000
right_atrium_auricular_region_female_adult_53_years	chr2	200889279	200889318	200889279	-	High_confidence	9	9	21	0.847812	4.201841	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889276	PPIL3|ENST00000465823.5	-	200870955,200876918,200881420,200885697,200887612,200888955	200871521,200877037,200881488,200885772,200887685,200889276	0.809524
right_atrium_auricular_region_female_adult_53_years	chr1	201365918	201365928	201365921	-	RAMPAGE_only	6	6	15	0.605580	3.378783	chr1	201365815	201366035	SINE|MIR|MIRc	-	chr1	201360826	201366966	TNNT2|ENST00000515042.5	-	201360826,201361912,201362385,201363295,201364297,201365190,201365609,201366837	201361369,201362022,201362394,201363406,201364375,201365307,201365670,201366966	0.933333
right_atrium_auricular_region_female_adult_53_years	chr4	185856832	185856833	185856832	-	RAMPAGE_only	4	4	6	0.242232	2.584963	chr4	185856698	185857067	LTR|ERVL-MaLR|THE1D	-	chr4	185585443	185812256	SORBS2|NM_001145670.1	-	185585443,185589678,185593885,185611779,185614830,185615044,185618584,185620062,185626831,185630548,185646667,185649466,185652661,185657423,185662103,185678422,185678795,185684753,185690561,185775226,185811663	185587688,185589785,185593935,185611980,185614959,185615159,185618631,185620151,185627019,185630598,185646782,185649656,185652728,185657596,185662242,185678547,185678822,185684842,185690611,185775366,185812256	0.666667
right_atrium_auricular_region_female_adult_53_years	chr2	219425186	219425187	219425186	+	RAMPAGE_only	13	13	14	0.565208	3.392747	chr2	219424901	219425196	SINE|Alu|AluSg	-	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	0.928571
right_atrium_auricular_region_female_adult_53_years	chr12	643625	643636	643635	-	High_confidence	14	14	41	1.655252	4.701746	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.902439
right_atrium_auricular_region_female_adult_53_years	chr1	201427175	201427176	201427175	-	RAMPAGE_only	12	12	12	0.484464	3.188722	chr1	201427119	201427295	SINE|MIR|MIR	-	chr1	201408863	201429866	TNNI1|ENST00000336092.8	-	201408863,201410325,201411356,201413031,201414517,201415212,201417115,201417782,201421672,201427174,201428837,201429698	201409250,201410435,201411533,201413121,201414649,201415254,201417119,201417812,201421726,201427293,201429274,201429866	1.000000
right_atrium_auricular_region_female_adult_53_years	chr2	37737573	37737609	37737608	-	High_confidence	4	4	13	0.524836	3.546594	chr2	37737141	37737728	LINE|L1|L1MEc	+	chr2	37646483	37738468	CDC42EP3|ENST00000453555.1	-	37646483,37688078,37719537,37738358	37646822,37688175,37719944,37738468	0.769231
right_atrium_auricular_region_female_adult_53_years	chr17	10291816	10291823	10291816	+	High_confidence	2	2	8	0.322976	2.807355	chr17	10291623	10291998	LTR|ERVL-MaLR|THE1B	+	chr17	10291819	10317926	AC005291.2|ENST00000609088.1	+	10291819,10317497	10291913,10317926	0.625000
right_atrium_auricular_region_female_adult_53_years	chr6	162234796	162234819	162234816	+	High_confidence	16	16	56	2.260832	4.591689	chr6	162234836	162234947	SINE|MIR|MIR3	+	chr6	162234768	162239907	STRG.13743.1	+	162234768,162239452	162234918,162239907	0.964286
right_atrium_auricular_region_female_adult_53_years	chr14	50766310	50766338	50766316	-	High_confidence	3	3	12	0.484464	3.095795	chr14	50766057	50766321	SINE|MIR|MIR	-	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.916667
right_atrium_auricular_region_female_adult_53_years	chr3	187021850	187021927	187021851	+	High_confidence	86	152	229	9.245186	5.930520	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.973799
right_atrium_auricular_region_female_adult_53_years	chr11	65431761	65431768	65431761	+	RAMPAGE_only	2	2	7	0.282604	2.584963	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65423959	65445528	STRG.21282.1	+	65423959,65426060,65436537	65425737,65435145,65445528	0.857143
right_atrium_auricular_region_female_adult_53_years	chr9	121286591	121286652	121286591	+	High_confidence	27	28	135	5.450219	6.081233	chr9	121286415	121286709	LINE|L2|L2b	+	chr9	121286591	121332656	GSN|ENST00000545652.6	+	121286591,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286761,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332656	0.970370
right_atrium_auricular_region_female_adult_53_years	chr10	133369958	133369979	133369958	-	RAMPAGE_only	3	3	11	0.444092	3.121928	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.909091
right_atrium_auricular_region_female_adult_53_years	chr17	76677245	76677266	76677265	-	RAMPAGE_only	5	7	10	0.403720	2.725481	chr17	76677010	76677308	SINE|Alu|AluSx	+	chr17	76672550	76710955	MXRA7|ENST00000355797.7	-	76672550,76685071,76688112,76710604	76677702,76685165,76688176,76710955	0.900000
right_atrium_auricular_region_female_adult_53_years	chr12	79455504	79455539	79455527	-	High_confidence	16	17	102	4.117943	5.663724	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.892157
right_atrium_auricular_region_female_adult_53_years	chr2	3536839	3536899	3536839	-	High_confidence	6	6	42	1.695624	4.716972	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3533223	3536869	AC108488.1|ENST00000438482.1	-	3533223,3534112,3536723	3533848,3534255,3536869	0.714286
right_atrium_auricular_region_female_adult_53_years	chr17	15475732	15475733	15475732	-	High_confidence	7	7	8	0.322976	2.521641	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15437858	15475728	CDRT4|ENST00000520956.2	-	15437858,15475600	15438200,15475728	0.750000
right_atrium_auricular_region_female_adult_53_years	chr18	9588091	9588112	9588091	-	RAMPAGE_only	1	1	7	0.282604	2.584963	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9547712	9614505	PPP4R1|ENST00000285124.12	-	9547712,9549196,9550051,9550277,9553321,9557220,9559418,9561979,9562921,9563377,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9595017,9614225,9614477	9547952,9549338,9550186,9550398,9553422,9557382,9559604,9562075,9563046,9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9595102,9614270,9614505	0.857143
right_atrium_auricular_region_female_adult_53_years	chr3	11634316	11634330	11634316	-	High_confidence	4	4	10	0.403720	3.121928	chr3	11634009	11634538	LINE|L2|L2	+	chr3	11564851	11633671	STRG.6228.8	-	11564851,11601832,11633116	11565019,11602022,11633671	0.700000
right_atrium_auricular_region_female_adult_53_years	chr1	236550198	236550248	236550198	+	RAMPAGE_only	3	3	17	0.686324	3.572469	chr1	236550186	236550235	DNA|TcMar-Tigger|Tigger19a	+	chr1	236523726	236552981	LGALS8|NM_201544.2	+	236523726,236525967,236537496,236538878,236540563,236541653,236542760,236543559,236544749,236548011	236524061,236526115,236537585,236539089,236540683,236541710,236542787,236543648,236544915,236552981	1.000000
right_atrium_auricular_region_female_adult_53_years	chr18	66670192	66670193	66670192	-	RAMPAGE_only	4	4	7	0.282604	2.521641	chr18	66669951	66670217	LINE|L2|L2	+	chr18	66501186	66604138	CDH19|NR_073130.1	-	66501186,66508994,66511567,66529844,66534985,66543970,66544718,66551093,66554404,66568415,66572009,66603953	66505302,66509218,66511685,66529966,66535107,66544224,66544903,66551258,66554524,66568710,66572316,66604138	0.857143
right_atrium_auricular_region_female_adult_53_years	chr3	4782339	4782406	4782358	+	High_confidence	10	13	78	3.149015	5.601891	chr3	4782402	4782508	DNA|hAT-Charlie|MER117	+	chr3	4782339	4788458	ITPR1|ENST00000481415.2	+	4782339,4783815,4787946	4782741,4783920,4788458	0.935897
right_atrium_auricular_region_female_adult_53_years	chr10	30974835	30974879	30974862	-	RAMPAGE_only	6	6	30	1.211160	4.513153	chr10	30974767	30974948	SINE|MIR|MIR3	-	chr10	30844633	30984426	ZNF438|ENST00000361310.7	-	30844633,30848530,30876997,30908932,30910359,30941574,30984368	30845573,30850367,30877065,30909015,30910440,30941651,30984426	0.600000
right_atrium_auricular_region_female_adult_53_years	chr9	129698737	129698760	129698737	+	High_confidence	14	18	39	1.574508	4.528741	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129698752	129722674	STRG.18691.2	+	129698752,129719230,129720595,129722216	129698809,129719418,129720774,129722674	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	128626809	128626821	128626809	-	RAMPAGE_only	4	4	15	0.605580	3.773557	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	1.000000
right_atrium_auricular_region_female_adult_53_years	chr2	229586902	229586909	229586905	-	High_confidence	3	3	10	0.403720	2.921928	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229580153	229587177	DNER|ENST00000482831.1	-	229580153,229585857,229586693	229580344,229586024,229587177	0.500000
right_atrium_auricular_region_female_adult_53_years	chr2	3533882	3533935	3533934	-	High_confidence	47	50	111	4.481291	5.900196	chr2	3533849	3534784	LTR|ERV1|LTR27E	+	chr2	3531983	3533782	AC108488.1|ENST00000439547.5	-	3531983,3533107,3533710	3532310,3533190,3533782	0.963964
right_atrium_auricular_region_female_adult_53_years	chr3	129439736	129439767	129439736	-	High_confidence	4	4	15	0.605580	3.664498	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129431265	129440007	MBD4|ENST00000503197.5	-	129431265,129432555,129433097,129433849,129434061,129436442,129437719,129439729	129431578,129432606,129433247,129433984,129434136,129437308,129437950,129440007	0.933333
right_atrium_auricular_region_female_adult_53_years	chr10	6737414	6737426	6737414	+	High_confidence	2	2	7	0.282604	2.807355	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	1.000000
right_atrium_auricular_region_female_adult_53_years	chr9	38949727	38949734	38949733	+	High_confidence	218	224	332	13.403501	6.705844	chr9	38949604	38949969	LTR|ERV1|LTR38B	+	chr9	38949739	38998508	STRG.17583.1	+	38949739,38950328,38964939,38997942	38949849,38950512,38965093,38998508	0.966867
right_atrium_auricular_region_female_adult_53_years	chr22	39968937	39968963	39968956	+	High_confidence	2	3	8	0.322976	3.000000	chr22	39968796	39969204	LINE|L2|L2b	+	chr22	39968732	39971105	STRG.34851.2	+	39968732,39969410,39970904	39969168,39969533,39971105	0.625000
right_atrium_auricular_region_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	248	249	273	11.021554	4.994520	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.926740
right_atrium_auricular_region_female_adult_53_years	chr4	158841765	158841813	158841765	+	High_confidence	9	9	40	1.614880	5.003056	chr4	158841566	158842041	LTR|ERVL|LTR75	+	chr4	158841760	158859647	STRG.9698.5	+	158841760,158851320,158859056,158859577	158841952,158851450,158859258,158859647	0.625000
right_atrium_auricular_region_female_adult_53_years	chr14	103848918	103848919	103848918	-	High_confidence	5	5	8	0.322976	2.521641	chr14	103848808	103849048	SINE|MIR|MIRb	+	chr14	103749213	103848931	STRG.25886.5	-	103749213,103752999,103754069,103757649,103778744,103784794,103797370,103848271	103749934,103753196,103754244,103757751,103778821,103784914,103797518,103848931	0.875000
right_atrium_auricular_region_female_adult_53_years	chr2	174118129	174118147	174118129	-	RAMPAGE_only	2	2	11	0.444092	3.277613	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075408	174124315	OLA1|ENST00000392560.6	-	174075408,174078967,174081151,174081923,174123179,174123594,174124263	174075527,174079090,174081248,174082064,174123277,174123675,174124315	0.636364
right_atrium_auricular_region_female_adult_53_years	chr13	30863491	30863494	30863491	+	RAMPAGE_only	5	5	9	0.363348	2.947703	chr13	30863143	30863642	LTR|ERVL|MER74A	+	chr13	30882550	30883395	LINC00545|ENST00000440633.1	+	30882550,30883093	30882659,30883395	1.000000
right_atrium_auricular_region_female_adult_53_years	chr5	148453024	148453049	148453024	+	High_confidence	4	5	11	0.444092	3.277613	chr5	148452965	148453486	LTR|ERVL|LTR50	+	chr5	148452858	148559861	STRG.11494.1	+	148452858,148468919,148550084,148559574	148453172,148469017,148550351,148559861	0.909091
right_atrium_auricular_region_female_adult_53_years	chr2	174118081	174118085	174118081	-	RAMPAGE_only	14	16	32	1.291904	4.502583	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075408	174124315	OLA1|ENST00000392560.6	-	174075408,174078967,174081151,174081923,174123179,174123594,174124263	174075527,174079090,174081248,174082064,174123277,174123675,174124315	0.656250
right_atrium_auricular_region_female_adult_53_years	chr17	4736390	4736404	4736390	-	High_confidence	4	5	8	0.322976	3.000000	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	1.000000
right_atrium_auricular_region_female_adult_53_years	chr2	69686969	69686991	69686985	+	High_confidence	15	15	41	1.655252	5.037401	chr2	69686866	69687221	LINE|CR1|L3	+	chr2	69686984	69713870	STRG.4248.8	+	69686984,69712509	69687082,69713870	0.585366
right_atrium_auricular_region_female_adult_53_years	chr20	45833293	45833311	45833293	-	High_confidence	7	9	30	1.211160	3.879894	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.966667
right_atrium_auricular_region_female_adult_53_years	chr1	159005961	159005962	159005961	+	High_confidence	10	10	10	0.403720	2.721928	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	20028679	20028706	20028686	+	High_confidence	6	6	24	0.968928	4.175736	chr1	20028464	20028814	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.500000
right_atrium_auricular_region_female_adult_53_years	chr19	55059182	55059203	55059182	-	High_confidence	2	2	12	0.484464	3.459432	chr19	55058976	55059133	LINE|L1|L1MB3	-	chr19	55048656	55059174	RDH13|ENST00000589605.5	-	55048656,55050699,55056652,55059156	55048763,55051002,55056808,55059174	0.750000
right_atrium_auricular_region_female_adult_53_years	chr8	23718318	23718340	23718318	-	High_confidence	3	3	10	0.403720	2.921928	chr8	23718266	23718319	LINE|L2|L2a	+	chr8	23710843	23718345	STRG.16081.2	-	23710843,23718202	23715247,23718345	1.000000
right_atrium_auricular_region_female_adult_53_years	chr12	91179064	91179080	91179064	-	High_confidence	2	2	7	0.282604	2.807355	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.857143
right_atrium_auricular_region_female_adult_53_years	chr11	67884427	67884452	67884427	+	RAMPAGE_only	5	5	18	0.726696	3.461320	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	1.000000
right_atrium_auricular_region_female_adult_53_years	chr9	68972369	68972402	68972369	-	RAMPAGE_only	3	3	10	0.403720	2.641604	chr9	68970975	68972371	LINE|L1|L1PA7	-	chr9	68969103	68975905	STRG.17841.2	-	68969103,68975663	68972641,68975905	0.900000
right_atrium_auricular_region_female_adult_53_years	chr10	124678197	124678198	124678197	-	RAMPAGE_only	7	8	11	0.444092	3.459432	chr10	124678125	124678223	LINE|CR1|L3	-	chr10	124621670	124742970	FAM53B|ENST00000392754.7	-	124621670,124681606,124696157,124706635,124742427	124623604,124682379,124696212,124706887,124742970	0.909091
right_atrium_auricular_region_female_adult_53_years	chr1	16020468	16020473	16020472	-	High_confidence	18	32	56	2.260832	4.910918	chr1	16020340	16020460	SINE|MIR|MIR3	-	chr1	16014027	16019594	HSPB7|ENST00000375718.4	-	16014027,16017073,16017764,16019133	16015759,16017207,16017852,16019594	0.910714
right_atrium_auricular_region_female_adult_53_years	chr17	75833306	75833307	75833306	-	RAMPAGE_only	7	7	10	0.403720	3.321928	chr17	75833179	75833712	LINE|L2|L2a	+	chr17	75829661	75830661	UNC13D|ENST00000590856.1	-	75829661,75830361,75830577	75830151,75830482,75830661	0.600000
right_atrium_auricular_region_female_adult_53_years	chr12	70550349	70550363	70550349	+	High_confidence	3	3	12	0.484464	3.459432	chr12	70549928	70550495	LINE|L2|L2c	-	chr12	70550202	70571409	STRG.23455.1	+	70550202,70557979,70560604,70569497	70550447,70558078,70560996,70571409	0.833333
right_atrium_auricular_region_female_adult_53_years	chr1	202585089	202585248	202585247	+	RAMPAGE_only	15	16	107	4.319803	4.817754	chr1	202585028	202585296	SINE|Alu|AluJb	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.990654
right_atrium_auricular_region_female_adult_53_years	chr18	31227606	31227643	31227631	-	High_confidence	216	269	1167	47.114115	7.404749	chr18	31226911	31227662	LINE|L2|L2	+	chr18	31124515	31227726	STRG.30723.3	-	31124515,31131593,31132567,31133890,31134571,31139747,31140041,31141998,31143656,31145610,31148497,31154773,31156042,31157370,31159444,31162531,31227437	31130711,31131842,31132689,31134130,31134784,31139890,31140301,31142184,31143791,31145777,31148642,31154929,31156162,31157573,31159529,31162848,31227726	0.915167
right_atrium_auricular_region_female_adult_53_years	chr15	82143715	82143730	82143715	-	RAMPAGE_only	2	2	8	0.322976	2.500000	chr15	82143509	82143849	LINE|CR1|L3	+	chr15	82130219	82262528	EFL1|NM_001322845.1	-	82130219,82138657,82151464,82157712,82163852,82214716,82219651,82220077,82225164,82227449,82228190,82229033,82230847,82238306,82240417,82241269,82252690,82259087,82261687,82262136	82130561,82138842,82152423,82157860,82163984,82214855,82219818,82220229,82225264,82227572,82228327,82229110,82230971,82238521,82240555,82241403,82252775,82259155,82261797,82262528	0.875000
right_atrium_auricular_region_female_adult_53_years	chr20	49506842	49506863	49506862	-	RAMPAGE_only	3	3	7	0.282604	2.584963	chr20	49506783	49507064	DNA|hAT-Charlie|MER102b	-	chr20	49503873	49568146	PTGIS|ENST00000244043.4	-	49503873,49511027,49513079,49514226,49524057,49539569,49544304,49547840,49550065,49568042	49508064,49511179,49513261,49514395,49524239,49539721,49544448,49548019,49550189,49568146	0.857143
right_atrium_auricular_region_female_adult_53_years	chr3	44439839	44439858	44439852	-	RAMPAGE_only	2	4	9	0.363348	2.750000	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431719	44477670	ZNF445|ENST00000396077.7	-	44431719,44449512,44450446,44450867,44451313,44455120,44458243,44477590	44448739,44449623,44450573,44450962,44451482,44455696,44458364,44477670	0.555556
right_atrium_auricular_region_female_adult_53_years	chr15	80059918	80059933	80059918	+	High_confidence	91	106	217	8.760722	5.461032	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.981567
right_atrium_auricular_region_female_adult_53_years	chr11	111986875	111986924	111986923	+	RAMPAGE_only	3	3	13	0.524836	3.392747	chr11	111986968	111987261	SINE|Alu|AluSc8	+	chr11	111988946	112019338	DIXDC1|ENST00000526500.5	+	111988946,111992414,111992950,111993495,111993668,111995018,111995402,111996079,112016690,112017776,112018955	111989055,111992519,111993004,111993588,111993740,111995108,111995564,111996146,112016796,112017885,112019338	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	179681645	179681666	179681665	+	RAMPAGE_only	17	19	43	1.735996	5.003056	chr3	179681222	179681750	LTR|ERV1|LTR6A	-	chr3	179653692	179784406	USP13|ENST00000496897.5	+	179653692,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653750,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179784406	0.906977
right_atrium_auricular_region_female_adult_53_years	chr6	12103409	12103425	12103424	+	RAMPAGE_only	3	4	6	0.242232	2.584963	chr6	12103250	12103431	SINE|MIR|MIRb	-	chr6	12012701	12120180	HIVEP1|ENST00000478545.1	+	12012701,12015525,12089183,12119889	12012789,12015668,12089237,12120180	0.666667
right_atrium_auricular_region_female_adult_53_years	chr9	14273883	14273901	14273883	-	RAMPAGE_only	3	3	8	0.322976	2.807355	chr9	14273766	14273878	LINE|L2|L2	-	chr9	14087673	14300231	NFIB|ENST00000636735.1	-	14087673,14102421,14120439,14125631,14146688,14150144,14155824,14179726,14300185	14088326,14102510,14120624,14125766,14146807,14150265,14155893,14179780,14300231	0.875000
right_atrium_auricular_region_female_adult_53_years	chr3	47610706	47610713	47610712	-	RAMPAGE_only	5	6	9	0.363348	2.500000	chr3	47610404	47610841	LINE|CR1|L3	-	chr3	47585887	47781915	SMARCC1|NM_003074.3	-	47585887,47590660,47610065,47622206,47635189,47636021,47638724,47661293,47662333,47670657,47675474,47676628,47678197,47680436,47686048,47689386,47693240,47701277,47706408,47710682,47714414,47720665,47729024,47736033,47738028,47745907,47772816,47781602	47588306,47590837,47610327,47622341,47635344,47636136,47638780,47661455,47662592,47670717,47675588,47676782,47678311,47680508,47686170,47689424,47693300,47701402,47706530,47710808,47714490,47720735,47729094,47736126,47738110,47745993,47772936,47781915	0.777778
right_atrium_auricular_region_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	56	56	61	2.462692	4.224795	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.918033
right_atrium_auricular_region_female_adult_53_years	chr9	116605987	116605990	116605987	-	RAMPAGE_only	29	29	43	1.735996	4.957445	chr9	116605863	116606013	SINE|MIR|MIR3	+	chr9	116425224	116687215	ASTN2|NM_198186.3	-	116425224,116440608,116442452,116487358,116618323,116620309,116651527,116686696	116426088,116440792,116442553,116487500,116618472,116620443,116651793,116687215	0.860465
right_atrium_auricular_region_female_adult_53_years	chr20	50172589	50172590	50172589	+	High_confidence	8	8	11	0.444092	3.459432	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172589	50176671	LINC01273|ENST00000411453.2	+	50172589,50172922,50176280	50172788,50173017,50176671	0.727273
right_atrium_auricular_region_female_adult_53_years	chr20	13851425	13851426	13851425	-	High_confidence	6	6	8	0.322976	2.807355	chr20	13851304	13851476	LINE|L2|L2a	+	chr20	13849246	13851419	SEL1L2|ENST00000482196.5	-	13849246,13850190,13851323	13849604,13850319,13851419	0.875000
right_atrium_auricular_region_female_adult_53_years	chr18	24326427	24326432	24326431	+	High_confidence	21	22	33	1.332276	4.078506	chr18	24326304	24326623	LTR|ERVL-MaLR|MLT1O	+	chr18	24326433	24402714	STRG.30690.1	+	24326433,24335925,24359991,24360848,24401099	24326735,24336110,24360111,24360923,24402714	0.969697
right_atrium_auricular_region_female_adult_53_years	chr4	102431237	102431248	102431237	-	High_confidence	9	10	38	1.534136	4.482289	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.894737
right_atrium_auricular_region_female_adult_53_years	chr14	75134051	75134123	75134091	-	RAMPAGE_only	4	4	29	1.170788	4.211261	chr14	75133229	75134244	LINE|L1|L1ME1	+	chr14	75131469	75176631	TMED10|ENST00000303575.8	-	75131469,75135759,75147663,75152031,75176354	75135006,75135886,75147737,75152143,75176631	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	155478133	155478163	155478133	-	RAMPAGE_only	3	3	9	0.363348	3.169925	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
right_atrium_auricular_region_female_adult_53_years	chr20	33363036	33363043	33363036	-	RAMPAGE_only	18	18	29	1.170788	3.308277	chr20	33362945	33363535	LINE|L1|L1MC4	+	chr20	33358840	33373359	CDK5RAP1|ENST00000461710.5	-	33358840,33366858,33370498,33372641	33360491,33367008,33370629,33373359	0.965517
right_atrium_auricular_region_female_adult_53_years	chr14	50756844	50756910	50756903	-	RAMPAGE_only	5	5	33	1.332276	4.306075	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
right_atrium_auricular_region_female_adult_53_years	chr2	159428333	159428357	159428356	-	RAMPAGE_only	4	6	16	0.645952	3.906891	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.750000
right_atrium_auricular_region_female_adult_53_years	chr11	17282859	17282915	17282906	+	RAMPAGE_only	3	5	19	0.767068	3.836592	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.842105
right_atrium_auricular_region_female_adult_53_years	chr3	9792219	9792226	9792225	-	High_confidence	4	4	8	0.322976	2.807355	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.625000
right_atrium_auricular_region_female_adult_53_years	chr4	128570477	128570488	128570487	-	High_confidence	7	7	18	0.726696	3.616875	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.944444
right_atrium_auricular_region_female_adult_53_years	chr16	74485827	74485887	74485827	-	RAMPAGE_only	2	2	15	0.605580	3.773557	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	1.000000
right_atrium_auricular_region_female_adult_53_years	chr19	34860632	34860680	34860633	-	High_confidence	6	10	35	1.413020	4.400432	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.600000
right_atrium_auricular_region_female_adult_53_years	chr7	107580475	107580507	107580475	+	High_confidence	3	4	12	0.484464	3.418296	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580467	107583982	BCAP29|ENST00000473124.1	+	107580467,107583881	107580864,107583982	0.583333
right_atrium_auricular_region_female_adult_53_years	chr5	157548014	157548017	157548014	-	RAMPAGE_only	8	10	14	0.565208	3.392747	chr5	157547714	157548425	LINE|L2|L2c	+	chr5	157481226	157575741	ADAM19|ENST00000517905.1	-	157481226,157488264,157489101,157490309,157491614,157491834,157492972,157494686,157496893,157499572,157502802,157505668,157507055,157509300,157513433,157518822,157519838,157530806,157537912,157564372,157570894,157575602	157481943,157488489,157489186,157490454,157491723,157491912,157493177,157494795,157497089,157499662,157502980,157505808,157507140,157509467,157513505,157518888,157520031,157530883,157537991,157564443,157570980,157575741	0.928571
right_atrium_auricular_region_female_adult_53_years	chr4	119217609	119217625	119217609	+	RAMPAGE_only	3	3	8	0.322976	2.807355	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212740	119239341	USP53|ENST00000507597.5	+	119212740,119217549,119235289,119239217	119212873,119217673,119235411,119239341	0.500000
right_atrium_auricular_region_female_adult_53_years	chr9	92536701	92536718	92536703	-	High_confidence	4	6	10	0.403720	3.121928	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.900000
right_atrium_auricular_region_female_adult_53_years	chr16	58435763	58435775	58435767	+	RAMPAGE_only	3	5	15	0.605580	3.378783	chr16	58435719	58435927	LTR|ERVL|LTR33	-	chr16	58421338	58441040	STRG.28198.1	+	58421338,58433809,58435691,58437155,58440544	58421421,58433948,58435823,58440478,58441040	0.866667
right_atrium_auricular_region_female_adult_53_years	chr11	46377167	46377192	46377191	+	High_confidence	2	3	7	0.282604	2.584963	chr11	46377234	46377297	LINE|L2|L2a	+	chr11	46377147	46379568	DGKZ|ENST00000529660.5	+	46377147,46378197,46378456,46378893,46379202,46379468	46377212,46378229,46378500,46379111,46379236,46379568	0.714286
right_atrium_auricular_region_female_adult_53_years	chr8	17935210	17935216	17935210	+	High_confidence	3	3	8	0.322976	2.521641	chr8	17934728	17935264	LTR|Gypsy?|LTR85a	-	chr8	17934992	17960103	STRG.15981.7	+	17934992,17935588,17937133,17938739,17939690,17940041,17947185,17950614,17952969,17955469,17956603,17957263,17957539,17960013	17935317,17935706,17937379,17939009,17939861,17940158,17947363,17950724,17953186,17955653,17956777,17957421,17957775,17960103	0.875000
right_atrium_auricular_region_female_adult_53_years	chr8	144063550	144063562	144063561	-	High_confidence	7	7	18	0.726696	3.392147	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144053212	144063544	STRG.17065.2	-	144053212,144054560,144054811,144055028,144055787,144056146,144056384,144056617,144056947,144057207,144057447,144057855,144058009,144058238,144058495,144058772,144058979,144059598,144059861,144060652,144063303	144053393,144054735,144054913,144055189,144055939,144056259,144056523,144056755,144057118,144057320,144057713,144057923,144058148,144058404,144058691,144058896,144059079,144059790,144060085,144061257,144063544	0.944444
right_atrium_auricular_region_female_adult_53_years	chr17	41871712	41871737	41871736	-	RAMPAGE_only	3	3	11	0.444092	3.121928	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.818182
right_atrium_auricular_region_female_adult_53_years	chr16	760877	760925	760924	+	High_confidence	52	60	136	5.490591	6.112865	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	1.000000
right_atrium_auricular_region_female_adult_53_years	chr8	39017077	39017099	39017077	+	High_confidence	7	7	13	0.524836	3.418296	chr8	39016988	39017120	SINE|MIR|MIRb	-	chr8	39017035	39021713	ADAM9|ENST00000481058.1	+	39017035,39018852,39021642	39017414,39018918,39021713	0.615385
right_atrium_auricular_region_female_adult_53_years	chr10	102449838	102449845	102449844	+	High_confidence	8	8	15	0.605580	3.456565	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449852	102456293	RPARP-AS1|ENST00000492465.2	+	102449852,102450186,102451398,102452089,102455336	102450022,102450360,102451555,102452187,102456293	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	23177530	23177531	23177530	-	High_confidence	4	4	7	0.282604	2.584963	chr1	23177412	23177535	SINE|MIR|MIRb	+	chr1	23084029	23177808	LUZP1|ENST00000302291.8	-	23084029,23091189,23109021,23168765,23177490	23089053,23094380,23109127,23169024,23177808	0.857143
right_atrium_auricular_region_female_adult_53_years	chr16	2757779	2757802	2757801	+	High_confidence	11	11	23	0.928556	4.088779	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
right_atrium_auricular_region_female_adult_53_years	chr11	9576229	9576246	9576236	+	RAMPAGE_only	3	3	11	0.444092	3.321928	chr11	9576215	9576303	LINE|CR1|L3	+	chr11	9577784	9586581	WEE1|ENST00000524612.5	+	9577784,9581531,9585257,9585441,9586448	9577895,9581678,9585353,9585527,9586581	0.636364
right_atrium_auricular_region_female_adult_53_years	chr6	169182827	169182833	169182829	-	High_confidence	4	6	12	0.484464	3.095795	chr6	169182607	169182961	LTR|ERVL-MaLR|THE1A	-	chr6	169175303	169182740	LINC02544|ENST00000564830.2	-	169175303,169179275,169182683	169175671,169179394,169182740	0.583333
right_atrium_auricular_region_female_adult_53_years	chr1	39310261	39310367	39310282	+	RAMPAGE_only	5	5	58	2.341576	5.157478	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.965517
right_atrium_auricular_region_female_adult_53_years	chr8	144063497	144063524	144063497	-	High_confidence	5	5	12	0.484464	2.855389	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144053212	144063544	STRG.17065.2	-	144053212,144054560,144054811,144055028,144055787,144056146,144056384,144056617,144056947,144057207,144057447,144057855,144058009,144058238,144058495,144058772,144058979,144059598,144059861,144060652,144063303	144053393,144054735,144054913,144055189,144055939,144056259,144056523,144056755,144057118,144057320,144057713,144057923,144058148,144058404,144058691,144058896,144059079,144059790,144060085,144061257,144063544	1.000000
right_atrium_auricular_region_female_adult_53_years	chr8	18083388	18083426	18083388	-	High_confidence	6	6	15	0.605580	3.807355	chr8	18083239	18083389	SINE|MIR|MIR3	+	chr8	18056458	18083408	ASAH1|ENST00000636691.1	-	18056458,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18067219,18069791,18071299,18075540,18083121	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18064531,18067298,18069878,18071390,18075587,18083408	0.733333
right_atrium_auricular_region_female_adult_53_years	chr3	188947236	188947237	188947236	+	High_confidence	8	8	12	0.484464	3.418296	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.916667
right_atrium_auricular_region_female_adult_53_years	chr3	42719390	42719403	42719390	+	RAMPAGE_only	1	1	7	0.282604	2.584963	chr3	42719436	42721839	LTR|ERV1|PABL_A-int	+	chr3	42721526	42723134	STRG.6594.1	+	42721526,42722148	42721650,42723134	0.714286
right_atrium_auricular_region_female_adult_53_years	chr4	155495858	155495894	155495889	+	High_confidence	17	17	61	2.462692	5.081782	chr4	155495502	155496083	LINE|L2|L2	-	chr4	155495905	155496512	STRG.9672.1	+	155495905	155496512	0.918033
right_atrium_auricular_region_female_adult_53_years	chr9	92536601	92536602	92536601	-	High_confidence	9	9	9	0.363348	2.725481	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	232553338	232553343	232553342	-	RAMPAGE_only	4	4	8	0.322976	2.807355	chr1	232552807	232553528	LTR|ERV1|LTR1F1	-	chr1	232397964	232561558	SIPA1L2|ENST00000366630.5	-	232397964,232402391,232403447,232404124,232415493,232425588,232428410,232432246,232439107,232441290,232441767,232443601,232445528,232460886,232464839,232471370,232479626,232483791,232490873,232493526,232513856,232561468	232399273,232402473,232403571,232404178,232415625,232425808,232428564,232432471,232439496,232441394,232441868,232443685,232445786,232461161,232465416,232471528,232479730,232483966,232491062,232493660,232515608,232561558	0.625000
right_atrium_auricular_region_female_adult_53_years	chr19	51795150	51795177	51795157	+	High_confidence	5	6	28	1.130416	4.182006	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	1.000000
right_atrium_auricular_region_female_adult_53_years	chr19	54617130	54617152	54617130	+	High_confidence	2	2	6	0.242232	2.584963	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.833333
right_atrium_auricular_region_female_adult_53_years	chr14	50756556	50756601	50756600	-	RAMPAGE_only	4	4	12	0.484464	3.277613	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.916667
right_atrium_auricular_region_female_adult_53_years	chr11	2375370	2375404	2375372	-	High_confidence	53	77	235	9.487418	6.082634	chr11	2375301	2375633	LINE|L2|L2b	+	chr11	2370131	2375387	STRG.20577.1	-	2370131,2375298	2373245,2375387	0.995745
right_atrium_auricular_region_female_adult_53_years	chr6	3083228	3083298	3083257	+	RAMPAGE_only	5	5	20	0.807440	3.921928	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	1.000000
right_atrium_auricular_region_female_adult_53_years	chr4	173369507	173369534	173369523	-	High_confidence	2	2	9	0.363348	3.000000	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.555556
right_atrium_auricular_region_female_adult_53_years	chr9	72363542	72363574	72363573	-	High_confidence	2	2	6	0.242232	2.584963	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.500000
right_atrium_auricular_region_female_adult_53_years	chr11	13419651	13419692	13419689	-	RAMPAGE_only	7	7	16	0.645952	3.906891	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.812500
right_atrium_auricular_region_female_adult_53_years	chr1	201384037	201384099	201384037	-	High_confidence	53	65	166	6.701751	5.924936	chr1	201383891	201384270	LINE|L2|L2c	+	chr1	201382685	201384087	STRG.2871.25	-	201382685,201383073,201383316,201383706	201382739,201383211,201383389,201384087	0.957831
right_atrium_auricular_region_female_adult_53_years	chr14	50756673	50756716	50756673	-	RAMPAGE_only	3	3	17	0.686324	3.572469	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
right_atrium_auricular_region_female_adult_53_years	chr17	3818889	3818920	3818916	-	High_confidence	5	5	19	0.767068	4.058814	chr17	3818803	3819275	DNA|TcMar-Tigger|Tigger17a	+	chr17	3818262	3819026	STRG.28731.7	-	3818262,3818811	3818572,3819026	0.736842
right_atrium_auricular_region_female_adult_53_years	chr4	79493249	79493275	79493274	+	High_confidence	3	3	8	0.322976	2.807355	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.750000
right_atrium_auricular_region_female_adult_53_years	chr16	58439522	58439557	58439544	+	RAMPAGE_only	3	4	13	0.524836	3.584963	chr16	58439344	58439639	SINE|Alu|AluY	-	chr16	58421338	58441040	STRG.28198.1	+	58421338,58433809,58435691,58437155,58440544	58421421,58433948,58435823,58440478,58441040	0.923077
right_atrium_auricular_region_female_adult_53_years	chr8	19955904	19955945	19955944	+	High_confidence	5	5	23	0.928556	4.061482	chr8	19955939	19955979	DNA|TcMar-Tigger|Tigger19b	+	chr8	19956004	19967196	LPL|ENST00000650478.1	+	19956004,19960900,19962114,19965309	19956083,19961083,19962219,19967196	0.913043
right_atrium_auricular_region_female_adult_53_years	chr12	104030726	104030727	104030726	+	High_confidence	46	47	47	1.897484	4.985412	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.936170
right_atrium_auricular_region_female_adult_53_years	chr13	52236207	52236228	52236226	-	High_confidence	3	6	12	0.484464	3.095795	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.583333
right_atrium_auricular_region_female_adult_53_years	chr7	113918638	113918696	113918672	-	High_confidence	6	6	25	1.009300	4.293661	chr7	113918643	113918708	DNA|hAT-Ac|OldhAT1	-	chr7	113879770	113918996	PPP1R3A|ENST00000284602.1	-	113879770,113882038,113882261,113918214,113918818	113880125,113882163,113882320,113918297,113918996	0.560000
right_atrium_auricular_region_female_adult_53_years	chr8	12522682	12522684	12522682	+	High_confidence	7	13	17	0.686324	3.327820	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12522586	12567269	STRG.15927.1	+	12522586,12530942,12565885	12522846,12531031,12567269	0.882353
right_atrium_auricular_region_female_adult_53_years	chr1	56645733	56645775	56645743	+	High_confidence	3	3	17	0.686324	3.625000	chr1	56645691	56645853	SINE|MIR|MIR3	+	chr1	56645387	56715334	PRKAA2|ENST00000610361.1	+	56645387,56671440,56674380,56691393,56692357,56693764,56695934,56703970,56706091,56707474	56645474,56671447,56674522,56691487,56692502,56693852,56696159,56704475,56706218,56715334	0.529412
right_atrium_auricular_region_female_adult_53_years	chr7	99410146	99410147	99410146	+	High_confidence	4	4	7	0.282604	2.584963	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.857143
right_atrium_auricular_region_female_adult_53_years	chr14	21360437	21360490	21360437	-	RAMPAGE_only	5	5	21	0.847812	4.297079	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351478	21358402	SUPT16H|ENST00000557394.5	-	21351478,21353487,21353702,21354410,21357196,21357926	21352818,21353565,21353832,21354540,21357366,21358402	0.523810
right_atrium_auricular_region_female_adult_53_years	chr2	28165286	28165304	28165303	+	RAMPAGE_only	9	12	16	0.645952	2.905639	chr2	28165020	28165437	LINE|L2|L2b	-	chr2	27890792	28338901	BABAM2|ENST00000361704.6	+	27890792,27894532,27929831,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28310081,28338449	27890842,27894684,27929908,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28310153,28338901	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	48924739	48924745	48924739	+	High_confidence	2	2	6	0.242232	2.584963	chr3	48924715	48924993	SINE|Alu|AluSc8	-	chr3	48924715	48945181	ARIH2|ENST00000463204.5	+	48924715,48927461,48945135	48924839,48927813,48945181	1.000000
right_atrium_auricular_region_female_adult_53_years	chr11	128565287	128565323	128565287	+	High_confidence	5	6	44	1.776368	5.065572	chr11	128565090	128565469	LTR|ERVL-MaLR|MLT1A1	+	chr11	128565965	128583041	STRG.22194.1	+	128565965,128582996	128566456,128583041	0.863636
right_atrium_auricular_region_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	591	635	1624	65.564116	6.418661	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.942118
right_atrium_auricular_region_female_adult_53_years	chr7	43881909	43881928	43881909	-	RAMPAGE_only	2	2	9	0.363348	2.750000	chr7	43881785	43881943	LINE|L2|L2	+	chr7	43875912	43889634	URGCP|ENST00000336086.10	-	43875912,43881658,43881906,43887414	43879260,43881697,43881957,43889634	0.888889
right_atrium_auricular_region_female_adult_53_years	chr8	17692207	17692242	17692225	-	High_confidence	13	13	45	1.816740	4.802915	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.733333
right_atrium_auricular_region_female_adult_53_years	chr8	56559496	56559497	56559496	-	High_confidence	11	11	12	0.484464	3.459432	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56496245	56559586	LINC00968|ENST00000519144.5	-	56496245,56520120,56559557	56496333,56520567,56559586	0.583333
right_atrium_auricular_region_female_adult_53_years	chr1	19344388	19344429	19344388	-	RAMPAGE_only	5	5	25	1.009300	3.943465	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
right_atrium_auricular_region_female_adult_53_years	chr1	229296931	229296959	229296931	+	RAMPAGE_only	12	12	59	2.381948	4.935621	chr1	229296919	229297133	SINE|MIR|MIRb	+	chr1	229271193	229303894	RAB4A|ENST00000473894.1	+	229271193,229295847,229297481,229298976,229302861,229303805	229271370,229295910,229297636,229299072,229302989,229303894	0.711864
right_atrium_auricular_region_female_adult_53_years	chr6	2990742	2990750	2990749	-	RAMPAGE_only	4	5	10	0.403720	3.121928	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.900000
right_atrium_auricular_region_female_adult_53_years	chr18	7823626	7823627	7823626	+	RAMPAGE_only	6	6	6	0.242232	2.584963	chr18	7823431	7823938	LTR|ERVL|MLT2A2	+	chr18	7774139	8406858	PTPRM|ENST00000400060.8	+	7774139,7888105,7906504,7926567,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8143646,8244057,8247844,8248149,8252487,8253226,8296367,8314780,8319177,8343422,8370889,8376045,8376461,8378264,8379166,8380295,8384560,8387071,8394475,8406108	7774271,7888377,7906583,7926683,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8143779,8244209,8247919,8248176,8252499,8253414,8296455,8314857,8319214,8343520,8371006,8376200,8376597,8378414,8379340,8380427,8384686,8387235,8394611,8406858	0.833333
right_atrium_auricular_region_female_adult_53_years	chr11	11963588	11964682	11963700	-	RAMPAGE_only	200	220	5473	220.955914	7.437120	chr11	11963645	11963694	DNA|hAT-Ac|OldhAT1	-	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.972410
right_atrium_auricular_region_female_adult_53_years	chr3	123335232	123335233	123335232	-	High_confidence	12	14	16	0.645952	3.327820	chr3	123334942	123335392	LTR|ERVL|MER74A	+	chr3	123300250	123335557	STRG.7387.3	-	123300250,123303054,123304066,123314234,123318019,123319673,123320748,123325321,123327617,123328643,123330888,123332563,123335157	123300295,123303219,123304183,123314322,123318117,123319818,123320771,123325462,123327759,123328802,123331016,123332675,123335557	0.937500
right_atrium_auricular_region_female_adult_53_years	chr7	154928503	154928504	154928503	+	High_confidence	5	5	7	0.282604	2.807355	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.857143
right_atrium_auricular_region_female_adult_53_years	chr17	47067498	47067518	47067498	-	High_confidence	234	247	899	36.294421	6.274419	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.939933
right_atrium_auricular_region_female_adult_53_years	chr8	2100901	2101036	2101015	+	RAMPAGE_only	9	9	92	3.714223	5.899822	chr8	2101063	2101381	SINE|Alu|AluSx1	+	chr8	2045068	2145455	MYOM2|ENST00000523438.1	+	2045068,2090007,2092345,2093969,2096246,2098856,2100875,2102666,2106241,2106490,2108785,2109394,2115959,2116215,2117884,2123251,2123554,2124178,2129126,2140722,2141140,2142374,2143400,2144663	2045168,2090191,2092520,2094091,2096434,2098983,2101054,2102781,2106398,2106597,2108830,2109531,2116104,2116275,2117952,2123365,2123642,2124217,2129232,2140886,2141177,2142397,2143456,2145455	0.978261
right_atrium_auricular_region_female_adult_53_years	chr16	65053812	65053821	65053820	-	RAMPAGE_only	3	4	10	0.403720	3.169925	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.800000
right_atrium_auricular_region_female_adult_53_years	chr16	58421251	58421323	58421322	+	High_confidence	620	620	1255	50.666850	7.370642	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421338	58441040	STRG.28198.1	+	58421338,58433809,58435691,58437155,58440544	58421421,58433948,58435823,58440478,58441040	0.899602
right_atrium_auricular_region_female_adult_53_years	chr14	68882879	68883037	68882879	-	High_confidence	21	21	183	7.388075	5.701060	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.978142
right_atrium_auricular_region_female_adult_53_years	chr7	6054548	6054656	6054548	-	RAMPAGE_only	8	9	42	1.695624	4.356370	chr7	6054207	6054503	SINE|Alu|AluSx1	-	chr7	6046722	6059056	EIF2AK1|ENST00000463213.5	-	6046722,6048806,6049911,6054545,6058965	6047091,6048844,6050045,6054704,6059056	0.666667
right_atrium_auricular_region_female_adult_53_years	chr8	109379998	109380016	109380015	+	RAMPAGE_only	12	12	21	0.847812	3.932138	chr8	109378677	109380056	LTR|ERVL|ERVL-E-int	+	chr8	109362476	109531271	PKHD1L1|NM_177531.4	+	109362476,109364546,109381369,109382462,109384069,109385536,109388496,109389078,109390451,109394414,109396026,109398458,109400075,109401496,109404553,109404994,109406334,109408048,109409864,109412264,109413420,109419096,109420517,109425084,109427001,109429339,109429931,109433105,109435189,109436337,109438323,109438896,109440709,109441274,109442006,109442945,109443675,109444660,109448142,109449337,109450974,109452123,109452717,109454166,109454722,109456261,109459594,109461771,109464215,109466577,109475117,109476507,109477224,109479550,109479990,109481432,109482986,109485043,109486647,109489951,109490971,109491872,109493660,109496918,109497149,109498461,109498654,109504326,109507662,109508096,109510776,109515169,109518166,109522185,109522743,109523232,109526783,109530079	109362653,109364636,109381514,109382571,109384127,109385630,109388550,109389152,109390494,109394485,109396137,109398548,109400344,109401588,109404713,109405130,109406478,109408206,109409978,109412414,109413545,109419260,109420690,109425232,109427156,109429462,109430037,109433216,109435354,109436459,109438456,109439092,109440852,109441379,109442195,109443116,109443902,109445645,109448391,109449487,109451149,109452280,109452874,109454246,109454852,109456391,109459836,109461908,109465245,109466769,109475269,109476667,109477396,109479639,109480139,109481562,109483105,109485173,109486821,109490055,109491101,109491994,109493751,109497067,109497272,109498573,109498771,109504492,109507895,109508264,109510934,109515305,109518508,109522337,109522890,109523386,109527020,109531271	0.904762
right_atrium_auricular_region_female_adult_53_years	chr1	1655395	1655410	1655409	-	RAMPAGE_only	9	10	16	0.645952	3.773557	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	0.937500
right_atrium_auricular_region_female_adult_53_years	chr6	79631273	79631329	79631302	+	High_confidence	84	85	317	12.797922	6.428476	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.977918
right_atrium_auricular_region_female_adult_53_years	chr1	20069006	20069030	20069029	+	RAMPAGE_only	5	6	14	0.565208	3.521641	chr1	20068973	20069258	LINE|L1|L1ME3G	+	chr1	20070207	20091168	PLA2G5|ENST00000375108.3	+	20070207,20084820,20086082,20089788,20090567	20070465,20084870,20086227,20089895,20091168	0.714286
right_atrium_auricular_region_female_adult_53_years	chr16	8842153	8842277	8842153	+	High_confidence	12	12	50	2.018600	4.658172	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.940000
right_atrium_auricular_region_female_adult_53_years	chr10	113623570	113623631	113623570	-	RAMPAGE_only	24	24	174	7.024727	6.274142	chr10	113623541	113623581	LINE|RTE-X|L4_B_Mam	+	chr10	113588715	113664046	NRAP|ENST00000369360.7	-	113588715,113589665,113590577,113592193,113595622,113597085,113597968,113604608,113605761,113606177,113608413,113610458,113612233,113614182,113614838,113615711,113617454,113620603,113621868,113623528,113624825,113626046,113628916,113629587,113631508,113631852,113633083,113634111,113640226,113641364,113645824,113646922,113650036,113650437,113651802,113652934,113654020,113657469,113662678,113663351,113663810	113589079,113589797,113590889,113592301,113595727,113597184,113598073,113604920,113605869,113606282,113608512,113610563,113612431,113614296,113614946,113615816,113617553,113620708,113622180,113623636,113624930,113626145,113629021,113629785,113631630,113631964,113633188,113634210,113640331,113641472,113645941,113647027,113650141,113650545,113651907,113653039,113654125,113657574,113662766,113663446,113664046	1.000000
right_atrium_auricular_region_female_adult_53_years	chr9	39810023	39810067	39810033	-	High_confidence	27	27	81	3.270131	5.613540	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803327	39810013	STRG.17610.2	-	39803327,39809485,39809730	39803859,39809615,39810013	0.901235
right_atrium_auricular_region_female_adult_53_years	chr11	77175226	77175292	77175226	+	High_confidence	8	8	56	2.260832	5.303820	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175309	77213918	STRG.21596.1	+	77175309,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353,77197480,77198494,77199648,77201447,77202299,77203059,77204075,77205461,77206096,77207288,77208429,77208696,77211151,77211820,77212951,77213859	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194524,77197598,77198621,77199818,77201638,77202424,77203217,77204229,77205617,77206202,77207402,77208517,77208803,77211337,77211937,77213035,77213918	0.982143
right_atrium_auricular_region_female_adult_53_years	chr6	36848663	36848695	36848669	-	RAMPAGE_only	7	7	34	1.372648	4.244201	chr6	36848589	36848687	LINE|CR1|L3b	-	chr6	36797111	36845126	STRG.12542.7	-	36797111,36798164,36798454,36799966,36822113,36823057,36839282,36842966,36843834,36844206	36797666,36798241,36798494,36800070,36822160,36823098,36842131,36843090,36843960,36845126	0.764706
right_atrium_auricular_region_female_adult_53_years	chr8	93794804	93794824	93794823	+	High_confidence	103	113	229	9.245186	6.289536	chr8	93794713	93794824	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.973799
right_atrium_auricular_region_female_adult_53_years	chr18	35136534	35136541	35136534	+	RAMPAGE_only	154	161	274	11.061926	6.675410	chr18	35136349	35136693	LINE|L2|L2c	-	chr18	35041649	35143470	MAPRE2|ENST00000589699.1	+	35041649,35070194,35097445,35101945,35126947,35132031,35140294	35041766,35070322,35097591,35102159,35127087,35132190,35143470	0.540146
right_atrium_auricular_region_female_adult_53_years	chrX	136936276	136936277	136936276	-	High_confidence	37	38	49	1.978228	4.275618	chrX	136936168	136936652	LTR|ERV1|LTR2C	-	chrX	136924712	136936253	STRG.36202.1	-	136924712,136935901	136925259,136936253	0.959184
right_atrium_auricular_region_female_adult_53_years	chr7	7689174	7689198	7689174	+	High_confidence	3	3	16	0.645952	3.773557	chr7	7689061	7689544	LTR|ERVL-MaLR|MLT1L	+	chr7	7689134	7721334	STRG.13953.4	+	7689134,7720912	7689460,7721334	0.750000
right_atrium_auricular_region_female_adult_53_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	19	19	19	0.767068	3.576618	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
right_atrium_auricular_region_female_adult_53_years	chr19	38376013	38376033	38376013	+	RAMPAGE_only	10	10	43	1.735996	4.383987	chr19	38375972	38376110	SINE|MIR|MIR	-	chr19	38374758	38383824	PSMD8|ENST00000602911.5	+	38374758,38376159,38376351,38379239,38380898,38382116,38383252	38374961,38376232,38376454,38379405,38380999,38382228,38383824	0.930233
right_atrium_auricular_region_female_adult_53_years	chr15	58851957	58851958	58851957	+	RAMPAGE_only	12	13	14	0.565208	3.521641	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	1.000000
right_atrium_auricular_region_female_adult_53_years	chr20	44887728	44887735	44887728	+	RAMPAGE_only	6	6	11	0.444092	3.095795	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885739	44901833	YWHAB|ENST00000428262.1	+	44885739,44887544,44901530	44885886,44887742,44901833	0.818182
right_atrium_auricular_region_female_adult_53_years	chr11	65437479	65437557	65437508	+	RAMPAGE_only	7	8	39	1.574508	4.100985	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65423959	65445528	STRG.21282.1	+	65423959,65426060,65436537	65425737,65435145,65445528	0.974359
right_atrium_auricular_region_female_adult_53_years	chr2	227534899	227534917	227534916	+	RAMPAGE_only	3	3	8	0.322976	2.521641	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.750000
right_atrium_auricular_region_female_adult_53_years	chr13	43053941	43054008	43053971	+	RAMPAGE_only	28	30	144	5.813567	5.341843	chr13	43052716	43054750	LINE|L1|L1PB1	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.965278
right_atrium_auricular_region_female_adult_53_years	chr22	46685359	46685393	46685359	-	RAMPAGE_only	9	9	42	1.695624	2.768129	chr22	46685063	46685370	SINE|Alu|AluSx	-	chr22	46684409	46738255	CERK|NM_022766.5	-	46684409,46689991,46691571,46693426,46695209,46699312,46701635,46707842,46711085,46712167,46720085,46720901,46738006	46687206,46690200,46691777,46693503,46695315,46699465,46701710,46707988,46711149,46712293,46720208,46721015,46738255	1.000000
right_atrium_auricular_region_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	530	729	1425	57.530089	5.334483	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.983860
right_atrium_auricular_region_female_adult_53_years	chr2	231072226	231072255	231072254	+	RAMPAGE_only	4	4	15	0.605580	3.640224	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	1.000000
right_atrium_auricular_region_female_adult_53_years	chr5	81251192	81251282	81251281	+	RAMPAGE_only	10	11	62	2.503064	5.562831	chr5	81251314	81251616	SINE|Alu|AluSc	+	chr5	81252732	81257923	CKMT2|ENST00000505135.1	+	81252732,81254395,81254992,81257732	81252893,81254491,81255214,81257923	0.903226
right_atrium_auricular_region_female_adult_53_years	chr4	10105056	10105084	10105056	-	RAMPAGE_only	2	2	8	0.322976	2.500000	chr4	10105045	10105316	LINE|L2|L2c	+	chr4	10097709	10106556	WDR1|ENST00000264785.11	-	10097709,10098991,10103895,10106428	10097891,10099139,10103986,10106556	0.875000
right_atrium_auricular_region_female_adult_53_years	chr12	55710131	55710152	55710131	+	High_confidence	2	3	9	0.363348	2.500000	chr12	55710078	55710380	SINE|Alu|AluSx1	+	chr12	55709958	55719670	STRG.23147.4	+	55709958,55715989,55716932,55719090,55719498	55710402,55716196,55717005,55719223,55719670	0.888889
right_atrium_auricular_region_female_adult_53_years	chr3	177668129	177668158	177668157	+	RAMPAGE_only	3	3	9	0.363348	2.725481	chr3	177668038	177668184	LTR|ERV1|HERVH-int	-	chr3	177722258	177752394	STRG.8032.1	+	177722258,177751910	177722284,177752394	0.666667
right_atrium_auricular_region_female_adult_53_years	chr6	158810410	158810505	158810410	-	RAMPAGE_only	10	10	75	3.027899	5.850717	chr6	158810364	158810539	LINE|L2|L2c	+	chr6	158765740	158818227	EZR|ENST00000337147.11	-	158765740,158767260,158769325,158769783,158770763,158771243,158776407,158783519,158784643,158785308,158787107,158789287,158818081	158767078,158767512,158769418,158769944,158770894,158771407,158776504,158783666,158784727,158785583,158787203,158789371,158818227	0.933333
right_atrium_auricular_region_female_adult_53_years	chr11	71999605	71999633	71999605	+	High_confidence	3	3	16	0.645952	3.750000	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999600	72002697	IL18BP|ENST00000534583.5	+	71999600,72000350,72001200,72001404,72001783,72002552	72000012,72000557,72001324,72001552,72001948,72002697	0.937500
right_atrium_auricular_region_female_adult_53_years	chr15	48925765	48925783	48925765	-	RAMPAGE_only	4	4	11	0.444092	2.921928	chr15	48925713	48926180	LINE|L2|L2a	-	chr15	48823734	48963444	SHC4|ENST00000332408.8	-	48823734,48834768,48843408,48851187,48855952,48857691,48867817,48872088,48884247,48890747,48924878,48962430	48826126,48835022,48843588,48851248,48856124,48857815,48867869,48872142,48884367,48890811,48924949,48963444	0.636364
right_atrium_auricular_region_female_adult_53_years	chr4	48546113	48546114	48546113	-	High_confidence	5	5	8	0.322976	2.521641	chr4	48546053	48546089	LINE|CR1|X7C_LINE	-	chr4	48521093	48546759	FRYL|ENST00000513401.5	-	48521093,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066	48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546759	0.875000
right_atrium_auricular_region_female_adult_53_years	chr12	46266488	46266516	46266488	-	High_confidence	8	9	28	1.130416	4.315824	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.928571
right_atrium_auricular_region_female_adult_53_years	chr11	64226142	64226180	64226158	-	High_confidence	156	162	675	27.251095	7.531459	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.979259
right_atrium_auricular_region_female_adult_53_years	chr1	160951425	160951493	160951492	-	High_confidence	3	4	13	0.524836	3.700440	chr1	160951407	160951550	LTR|ERVL|LTR40b	+	chr1	160945093	160951474	STRG.2437.4	-	160945093,160947928,160950045,160950552,160951042	160945292,160948032,160950166,160950711,160951474	0.923077
right_atrium_auricular_region_female_adult_53_years	chr15	48925836	48925837	48925836	-	RAMPAGE_only	5	5	8	0.322976	2.500000	chr15	48925713	48926180	LINE|L2|L2a	-	chr15	48823734	48963444	SHC4|ENST00000332408.8	-	48823734,48834768,48843408,48851187,48855952,48857691,48867817,48872088,48884247,48890747,48924878,48962430	48826126,48835022,48843588,48851248,48856124,48857815,48867869,48872142,48884367,48890811,48924949,48963444	0.750000
right_atrium_auricular_region_female_adult_53_years	chr1	36204469	36204489	36204488	+	RAMPAGE_only	8	8	16	0.645952	3.323231	chr1	36204301	36204536	DNA|hAT-Charlie|MER20	-	chr1	36224411	36305357	THRAP3|NM_001321473.1	+	36224411,36259381,36282532,36286367,36289059,36291373,36292597,36293850,36296582,36300885,36301555,36303795	36224505,36259484,36282700,36287270,36289764,36291546,36292709,36293935,36296770,36301084,36301696,36305357	0.687500
right_atrium_auricular_region_female_adult_53_years	chr2	10844223	10844267	10844241	+	High_confidence	32	32	177	7.145843	6.028599	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844234	10885118	STRG.3591.4	+	10844234,10884833	10844505,10885118	0.587571
right_atrium_auricular_region_female_adult_53_years	chr9	123652050	123652058	123652050	-	RAMPAGE_only	3	3	8	0.322976	2.750000	chr9	123651992	123652144	DNA|hAT-Ac|OldhAT1	-	chr9	123401809	123676791	DENND1A|ENST00000394215.6	-	123401809,123403401,123440359,123450692,123452275,123454738,123457347,123457792,123557569,123583168,123609435,123630375,123652012,123667025,123671290,123676719	123401912,123403490,123440491,123450749,123452347,123454779,123457435,123457897,123557695,123583270,123609481,123630476,123652123,123667079,123671371,123676791	1.000000
right_atrium_auricular_region_female_adult_53_years	chr10	80201400	80201409	80201400	-	High_confidence	3	3	7	0.282604	2.807355	chr10	80201225	80201570	LINE|L2|L2	+	chr10	80155587	80201650	STRG.19816.2	-	80155587,80157640,80157966,80159099,80161934,80163348,80163533,80164052,80166083,80166889,80167225,80168968,80170799,80172806,80176106,80201258	80155912,80157763,80158025,80159195,80162028,80163405,80163613,80164143,80166197,80166984,80167313,80169358,80170915,80172869,80176155,80201650	1.000000
right_atrium_auricular_region_female_adult_53_years	chr14	50756736	50756774	50756741	-	RAMPAGE_only	4	4	14	0.565208	2.931209	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.928571
right_atrium_auricular_region_female_adult_53_years	chr16	72073244	72073245	72073244	+	High_confidence	22	24	24	0.968928	3.709148	chr16	72072861	72073376	LTR|ERV1|LTR10B	+	chr16	72073997	72077250	STRG.28370.16	+	72073997,72075144,72076302	72074385,72075219,72077250	1.000000
right_atrium_auricular_region_female_adult_53_years	chr2	40453541	40453547	40453541	-	High_confidence	2	2	6	0.242232	2.584963	chr2	40453521	40453703	DNA|hAT-Charlie|MER5B	+	chr2	40430019	40453438	SLC8A1|ENST00000455476.5	-	40430019,40453160	40430304,40453438	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	139344535	139344548	139344547	+	High_confidence	46	46	129	5.207987	5.403767	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.961240
right_atrium_auricular_region_female_adult_53_years	chr13	52236320	52236338	52236325	-	RAMPAGE_only	6	6	24	0.968928	3.936180	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.833333
right_atrium_auricular_region_female_adult_53_years	chr7	7688049	7688070	7688069	+	RAMPAGE_only	2	2	8	0.322976	2.807355	chr7	7688049	7688212	DNA|hAT-Charlie|Charlie4z	+	chr7	7689134	7721334	STRG.13953.4	+	7689134,7720912	7689460,7721334	0.500000
right_atrium_auricular_region_female_adult_53_years	chr8	109379959	109379974	109379959	+	RAMPAGE_only	2	2	7	0.282604	2.807355	chr8	109378677	109380056	LTR|ERVL|ERVL-E-int	+	chr8	109362476	109531271	PKHD1L1|NM_177531.4	+	109362476,109364546,109381369,109382462,109384069,109385536,109388496,109389078,109390451,109394414,109396026,109398458,109400075,109401496,109404553,109404994,109406334,109408048,109409864,109412264,109413420,109419096,109420517,109425084,109427001,109429339,109429931,109433105,109435189,109436337,109438323,109438896,109440709,109441274,109442006,109442945,109443675,109444660,109448142,109449337,109450974,109452123,109452717,109454166,109454722,109456261,109459594,109461771,109464215,109466577,109475117,109476507,109477224,109479550,109479990,109481432,109482986,109485043,109486647,109489951,109490971,109491872,109493660,109496918,109497149,109498461,109498654,109504326,109507662,109508096,109510776,109515169,109518166,109522185,109522743,109523232,109526783,109530079	109362653,109364636,109381514,109382571,109384127,109385630,109388550,109389152,109390494,109394485,109396137,109398548,109400344,109401588,109404713,109405130,109406478,109408206,109409978,109412414,109413545,109419260,109420690,109425232,109427156,109429462,109430037,109433216,109435354,109436459,109438456,109439092,109440852,109441379,109442195,109443116,109443902,109445645,109448391,109449487,109451149,109452280,109452874,109454246,109454852,109456391,109459836,109461908,109465245,109466769,109475269,109476667,109477396,109479639,109480139,109481562,109483105,109485173,109486821,109490055,109491101,109491994,109493751,109497067,109497272,109498573,109498771,109504492,109507895,109508264,109510934,109515305,109518508,109522337,109522890,109523386,109527020,109531271	1.000000
right_atrium_auricular_region_female_adult_53_years	chr12	91178944	91178975	91178974	-	High_confidence	3	3	7	0.282604	2.584963	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.714286
right_atrium_auricular_region_female_adult_53_years	chr12	55626261	55626302	55626267	-	RAMPAGE_only	103	103	193	7.791795	4.986002	chr12	55626113	55626696	LTR|ERVL-MaLR|MLT1F2	-	chr12	55434754	55585471	AC122685.1|ENST00000556750.5	-	55434754,55476548,55493090,55585414	55435131,55476601,55493158,55585471	0.968912
right_atrium_auricular_region_female_adult_53_years	chr15	42415893	42415931	42415930	-	RAMPAGE_only	3	3	9	0.363348	3.169925	chr15	42415739	42416031	SINE|Alu|AluSx	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	1.000000
right_atrium_auricular_region_female_adult_53_years	chr5	79689354	79689355	79689354	+	High_confidence	12	12	15	0.605580	3.773557	chr5	79689238	79689475	SINE|MIR|MIRb	+	chr5	79689835	79800226	CMYA5|NM_153610.4	+	79689835,79728914,79743826,79745221,79747090,79752675,79758752,79761810,79763061,79788970,79790969,79793436,79799369	79690056,79739403,79743922,79745455,79747113,79752794,79758902,79761957,79763209,79789104,79791069,79793610,79800226	0.733333
right_atrium_auricular_region_female_adult_53_years	chr1	56712548	56712714	56712704	+	RAMPAGE_only	62	62	335	13.524617	3.548394	chr1	56712569	56712878	SINE|Alu|AluSx1	+	chr1	56645387	56715334	PRKAA2|ENST00000610361.1	+	56645387,56671440,56674380,56691393,56692357,56693764,56695934,56703970,56706091,56707474	56645474,56671447,56674522,56691487,56692502,56693852,56696159,56704475,56706218,56715334	0.997015
right_atrium_auricular_region_female_adult_53_years	chr2	68872803	68872874	68872855	-	RAMPAGE_only	47	51	263	10.617834	6.146390	chr2	68872511	68872953	LTR|ERVL|MLT2A1	+	chr2	68860918	68882168	STRG.4298.1	-	68860918,68871024,68872530,68878058,68881441,68881957	68866571,68871312,68873376,68878220,68881493,68882168	0.965779
right_atrium_auricular_region_female_adult_53_years	chr6	122444159	122444465	122444187	-	RAMPAGE_only	51	76	855	34.518053	5.818812	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	1.000000
right_atrium_auricular_region_female_adult_53_years	chr6	42903071	42903072	42903071	-	High_confidence	40	40	42	1.695624	4.615312	chr6	42902632	42903629	LTR|ERVK|LTR5B	-	chr6	42893752	42902862	STRG.12639.1	-	42893752,42901283,42902524	42894755,42901328,42902862	0.904762
right_atrium_auricular_region_female_adult_53_years	chrX	149606248	149606250	149606249	-	RAMPAGE_only	7	10	14	0.565208	3.700440	chrX	149605893	149606457	DNA|hAT-Charlie|MER119	-	chrX	149597964	149608751	TMEM185A|ENST00000502858.3	-	149597964,149599553,149600302,149608626	149598255,149599677,149600479,149608751	0.857143
right_atrium_auricular_region_female_adult_53_years	chr11	58578102	58578133	58578102	-	High_confidence	10	10	35	1.413020	4.331977	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.742857
right_atrium_auricular_region_female_adult_53_years	chr1	46152137	46152138	46152137	-	RAMPAGE_only	9	9	12	0.484464	3.584963	chr1	46151587	46152560	LTR|Gypsy|MamGyp-int	-	chr1	46040139	46133036	PIK3R3|NM_001114172.1	-	46040139,46045917,46046550,46055794,46061928,46066053,46066910,46077514,46080641,46131846,46132783	46043871,46046088,46046625,46055971,46062071,46066179,46067091,46077613,46080750,46131956,46133036	1.000000
right_atrium_auricular_region_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	11137	11459	27599	1114.226618	7.568750	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91146165	91179513	DCN|ENST00000546391.5	-	91146165,91151653,91153095,91178341,91179361	91146252,91151792,91153189,91178585,91179513	0.513859
right_atrium_auricular_region_female_adult_53_years	chr14	39004560	39004590	39004560	-	High_confidence	2	2	10	0.403720	2.725481	chr14	39004443	39004660	SINE|MIR|MIR3	+	chr14	38948321	39004346	STRG.25073.1	-	38948321,39004078	38948377,39004346	0.700000
right_atrium_auricular_region_female_adult_53_years	chr1	150647432	150647457	150647432	-	RAMPAGE_only	2	3	14	0.565208	2.645593	chr1	150647218	150647510	SINE|Alu|AluJo	+	chr1	150646224	150697024	GOLPH3L|ENST00000271732.7	-	150646224,150661813,150663631,150694655,150696991	150648748,150661928,150663763,150694850,150697024	1.000000
right_atrium_auricular_region_female_adult_53_years	chr13	52236182	52236183	52236182	-	RAMPAGE_only	11	11	12	0.484464	3.277613	chr13	52235788	52236194	LINE|L1|L1PA16	+	chr13	52219343	52325605	TPTE2P2|ENST00000605924.5	-	52219343,52221735,52223238,52227004,52229325,52233063,52235219,52253744,52253936,52279840,52280651,52280861,52283237,52289821,52291506,52297765,52308245,52309195,52323279,52323829,52324065,52325539	52219630,52221806,52223331,52227096,52229431,52233144,52235281,52253833,52254018,52279905,52280715,52280961,52283357,52289983,52291557,52297828,52308299,52309249,52323388,52323969,52324167,52325605	0.500000
right_atrium_auricular_region_female_adult_53_years	chr4	152412488	152412529	152412528	-	High_confidence	15	15	28	1.130416	4.236369	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.964286
right_atrium_auricular_region_female_adult_53_years	chr19	11356872	11356882	11356881	+	High_confidence	3	3	8	0.322976	2.807355	chr19	11356842	11356927	SINE|MIR|MIRc	+	chr19	11357695	11359894	PLPPR2|ENST00000588196.1	+	11357695,11359531	11357739,11359894	0.625000
right_atrium_auricular_region_female_adult_53_years	chr1	20028407	20028516	20028515	+	High_confidence	249	299	611	24.667287	7.761397	chr1	20028464	20028814	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.787234
right_atrium_auricular_region_female_adult_53_years	chr11	17282813	17282822	17282813	+	RAMPAGE_only	12	12	23	0.928556	4.001823	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.956522
right_atrium_auricular_region_female_adult_53_years	chr1	21841544	21841635	21841544	-	RAMPAGE_only	7	7	77	3.108643	5.259958	chr1	21841366	21841498	SINE|MIR|MIRb	-	chr1	21823300	21874706	STRG.522.2	-	21823300,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21832874,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21832892,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874706	1.000000
right_atrium_auricular_region_female_adult_53_years	chr2	218287266	218287280	218287279	-	High_confidence	131	132	264	10.658206	6.040895	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.901515
right_atrium_auricular_region_female_adult_53_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	14	16	16	0.645952	3.750000	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	29280853	29280877	29280853	-	High_confidence	5	5	18	0.726696	3.947703	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.777778
right_atrium_auricular_region_female_adult_53_years	chr2	190760500	190760501	190760500	-	High_confidence	409	411	429	17.319585	6.738527	chr2	190760093	190761528	LTR|ERV1|LTR12C	-	chr2	190753838	190760497	STRG.5425.1	-	190753838,190760091	190755127,190760497	0.890443
right_atrium_auricular_region_female_adult_53_years	chr15	90467513	90467554	90467513	+	RAMPAGE_only	5	6	16	0.645952	3.640224	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.500000
right_atrium_auricular_region_female_adult_53_years	chr11	112176365	112176373	112176372	+	High_confidence	158	323	550	22.204596	6.477040	chr11	112176309	112176508	LINE|L2|L2c	-	chr11	112176370	112218135	BCO2|ENST00000526088.5	+	112176370,112179277,112193473,112193878,112194652,112199698,112200612,112202022,112213723,112214761,112216219,112217760	112176458,112179482,112193697,112193994,112194755,112199827,112200773,112202190,112213861,112214926,112216330,112218135	0.921818
right_atrium_auricular_region_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	119	122	122	4.925383	5.678824	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.950820
right_atrium_auricular_region_female_adult_53_years	chr7	137885851	137885867	137885855	-	High_confidence	4	5	13	0.524836	3.238901	chr7	137885838	137886197	LTR|ERVL-MaLR|MLT1A0	+	chr7	137874978	137885895	STRG.15519.3	-	137874978,137882411,137884994,137885402,137885660	137880551,137882628,137885121,137885502,137885895	1.000000
right_atrium_auricular_region_female_adult_53_years	chr4	151687295	151687315	151687304	-	High_confidence	17	17	46	1.857112	4.882045	chr4	151687184	151687573	LINE|L2|L2b	+	chr4	151670943	151687083	GATB|ENST00000507592.5	-	151670943,151672761,151679812,151686907	151671302,151672896,151679891,151687083	0.978261
right_atrium_auricular_region_female_adult_53_years	chr14	50159437	50159445	50159437	-	RAMPAGE_only	3	3	6	0.242232	2.584963	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	1.000000
right_atrium_auricular_region_female_adult_53_years	chr2	187461965	187461994	187461965	+	RAMPAGE_only	13	13	26	1.049672	4.257756	chr2	187461411	187462268	LTR|ERV1|LTR1A2	+	chr2	187003273	187554393	AC007319.1|ENST00000412276.5	+	187003273,187191834,187499505,187546728,187547077,187547482,187554275	187003365,187191931,187499605,187546839,187547163,187547707,187554393	0.576923
right_atrium_auricular_region_female_adult_53_years	chr12	52043592	52043621	52043603	+	High_confidence	5	5	15	0.605580	3.324863	chr12	52043411	52043661	SINE|tRNA|LFSINE_Vert	-	chr12	52043726	52055961	NR4A1|ENST00000478250.1	+	52043726,52054326	52043911,52055961	0.933333
right_atrium_auricular_region_female_adult_53_years	chr4	79492406	79492407	79492406	+	High_confidence	6	6	9	0.363348	3.169925	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492415	79576460	LINC00989|ENST00000508174.5	+	79492415,79493151,79513784,79575140	79492623,79493585,79513902,79576460	1.000000
right_atrium_auricular_region_female_adult_53_years	chr3	42719078	42719087	42719086	-	RAMPAGE_only	8	8	16	0.645952	3.875000	chr3	42718677	42719381	LTR|ERV1|MER41-int	+	chr3	42708268	42773253	CCDC13|ENST00000310232.10	-	42708268,42709683,42713161,42730466,42732886,42733469,42735706,42739633,42742895,42745922,42747256,42751935,42752574,42757065,42758124,42773175	42709139,42709798,42713316,42730589,42732970,42733609,42735913,42739810,42743057,42746027,42747373,42752025,42752717,42757214,42758351,42773253	0.750000
right_atrium_auricular_region_female_adult_53_years	chr1	57725451	57725452	57725451	-	RAMPAGE_only	8	8	8	0.322976	2.750000	chr1	57725173	57725585	LTR|ERV1|MER110	+	chr1	56994777	57424057	DAB1|ENST00000371236.6	-	56994777,57010679,57011144,57014882,57023530,57025980,57062883,57069359,57071022,57071521,57072282,57136542,57145289,57290963,57423929	56998128,57010790,57011272,57015431,57023639,57026043,57062943,57069425,57071061,57071641,57072414,57136641,57145429,57291166,57424057	0.625000
right_atrium_auricular_region_female_adult_53_years	chr3	63146376	63146407	63146380	+	High_confidence	316	329	1621	65.443000	5.038524	chr3	63146255	63146817	LTR|ERVL|MLT2B3	+	chr3	63146350	63167120	STRG.6951.1	+	63146350,63148679,63166987	63146729,63148801,63167120	0.953115
right_atrium_auricular_region_female_adult_53_years	chr2	55654900	55654916	55654900	-	RAMPAGE_only	2	3	8	0.322976	2.807355	chr2	55654742	55654866	SINE|Alu|AluJr	-	chr2	55636369	55647382	PNPT1|ENST00000481066.1	-	55636369,55637551,55640626,55643157,55643318,55644636,55646258,55646414,55647346	55636392,55637599,55640705,55643213,55643425,55645432,55646322,55646486,55647382	0.875000
right_atrium_auricular_region_female_adult_53_years	chr11	47351783	47351809	47351806	-	High_confidence	19	19	73	2.947155	5.569657	chr11	47351577	47351776	SINE|MIR|MIRb	-	chr11	47331396	47352702	MYBPC3|ENST00000545968.5	-	47331396,47331844,47332071,47332565,47332813,47333193,47333556,47333921,47335041,47335876,47337390,47337689,47338519,47339323,47339650,47341002,47341137,47341990,47342577,47342829,47343020,47343259,47343491,47346206,47346626,47347026,47347425,47347650,47347856,47348423,47349773,47350013,47350501,47351238,47352622	47331716,47331881,47332258,47332702,47332973,47333333,47333752,47334010,47335209,47336011,47337579,47337794,47338679,47339404,47339790,47341032,47341244,47342156,47342744,47342935,47343145,47343262,47343624,47346370,47346644,47347029,47347479,47347680,47347905,47348541,47349922,47350112,47350615,47351505,47352702	0.534247
right_atrium_auricular_region_female_adult_53_years	chr10	17617790	17617797	17617796	-	High_confidence	9	10	15	0.605580	3.521641	chr10	17617759	17617913	SINE|Alu|FRAM	-	chr10	17589031	17617377	HACD1|ENST00000361271.7	-	17589031,17594204,17599289,17603559,17603725,17603929,17617082	17590446,17594383,17599411,17603648,17603744,17604047,17617377	0.600000
right_atrium_auricular_region_female_adult_53_years	chr11	73468783	73468827	73468826	-	High_confidence	41	42	162	6.540263	5.265019	chr11	73468774	73468895	SINE|MIR|MIR3	+	chr11	73430162	73468492	FAM168A|ENST00000432223.2	-	73430162,73468404	73430770,73468492	0.561728
right_atrium_auricular_region_female_adult_53_years	chr12	7502477	7502529	7502522	-	High_confidence	7	7	52	2.099344	5.154968	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	1.000000
right_atrium_auricular_region_female_adult_53_years	chr16	20674613	20674648	20674613	+	High_confidence	6	6	14	0.565208	3.467720	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674607	20770109	STRG.27755.1	+	20674607,20679157,20749909,20755572,20769983	20674822,20679449,20750003,20755616,20770109	0.857143
right_atrium_auricular_region_female_adult_53_years	chr1	155058725	155058762	155058761	+	High_confidence	5	5	24	0.968928	3.754442	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.916667
right_atrium_auricular_region_female_adult_53_years	chr12	26832774	26832798	26832797	-	High_confidence	3	4	10	0.403720	2.725481	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26716161	26832786	ITPR2|ENST00000545235.1	-	26716161,26722396,26724655,26725649,26832689	26716242,26722555,26724742,26725765,26832786	0.900000
right_atrium_auricular_region_female_adult_53_years	chr2	10844364	10844421	10844373	+	High_confidence	86	86	273	11.021554	6.083987	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844234	10885118	STRG.3591.1	+	10844234,10844752,10884833	10844505,10844832,10885118	0.586081
right_atrium_auricular_region_female_adult_53_years	chr10	110496232	110496279	110496244	-	High_confidence	3	5	16	0.645952	3.327820	chr10	110496171	110496447	LINE|L2|L2b	+	chr10	110475103	110496204	AL355512.1|ENST00000607952.1	-	110475103,110496118	110475226,110496204	0.625000
right_atrium_auricular_region_female_adult_53_years	chr11	46375584	46375623	46375584	+	High_confidence	3	3	11	0.444092	2.921928	chr11	46375632	46375749	SINE|MIR|MIRb	+	chr11	46375023	46377350	DGKZ|ENST00000529698.1	+	46375023,46375431,46375850,46376065,46376327,46376523,46377072	46375045,46375631,46375951,46376145,46376397,46376564,46377350	0.909091
right_atrium_auricular_region_female_adult_53_years	chrX	11351666	11351676	11351675	-	RAMPAGE_only	11	11	22	0.888184	4.221928	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.681818
right_atrium_auricular_region_female_adult_53_years	chr8	99892036	99892057	99892056	-	RAMPAGE_only	597	597	1097	44.288076	4.985665	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.979945
right_atrium_auricular_region_female_adult_53_years	chr19	41262670	41262716	41262715	+	High_confidence	4	4	11	0.444092	2.721928	chr19	41262757	41263068	SINE|Alu|AluSq	+	chr19	41262670	41276168	HNRNPUL1|ENST00000601309.5	+	41262670,41268222,41272081,41273981,41276158	41262981,41268345,41272235,41274055,41276168	0.727273
right_atrium_auricular_region_female_adult_53_years	chr16	81181330	81181341	81181330	-	High_confidence	3	3	10	0.403720	2.921928	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	1.000000
right_atrium_auricular_region_female_adult_53_years	chr17	29667414	29667420	29667414	-	RAMPAGE_only	9	10	26	1.049672	4.003856	chr17	29667384	29667678	DNA|hAT-Charlie|MER1B	+	chr17	29630799	29761390	STRG.29262.3	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677741,29684684,29695523,29703062,29761390	0.961538
right_atrium_auricular_region_female_adult_53_years	chr16	20674404	20674452	20674404	+	High_confidence	3	4	20	0.807440	3.616349	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674419	20682176	STRG.27755.4	+	20674419,20674673,20679157	20674477,20674822,20682176	0.850000
right_atrium_auricular_region_female_adult_53_years	chr12	70553608	70553617	70553608	+	RAMPAGE_only	2	2	7	0.282604	2.584963	chr12	70553517	70553682	DNA|TcMar-Tigger|Tigger19a	+	chr12	70550202	70571409	STRG.23455.1	+	70550202,70557979,70560604,70569497	70550447,70558078,70560996,70571409	0.857143
right_atrium_auricular_region_female_adult_53_years	chr4	114364914	114364967	114364914	-	High_confidence	210	211	608	24.546171	5.096682	chr4	114364772	114365325	LTR|ERVL-MaLR|MLT1E3	-	chr4	114334800	114364964	STRG.9342.1	-	114334800,114335128,114364807	114335026,114335244,114364964	0.953947
right_atrium_auricular_region_female_adult_53_years	chr22	46575631	46575633	46575631	+	High_confidence	4	6	8	0.322976	2.521641	chr22	46575415	46575643	LINE|L2|L2c	-	chr22	46576011	46637936	GRAMD4|ENST00000447351.5	+	46576011,46626750,46637839	46576078,46626961,46637936	0.625000
right_atrium_auricular_region_female_adult_53_years	chr11	123060124	123060256	123060168	-	High_confidence	36	36	250	10.092998	5.584678	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	0.996000
right_atrium_auricular_region_female_adult_53_years	chr4	185878685	185878711	185878703	-	RAMPAGE_only	33	37	205	8.276258	6.414167	chr4	185878408	185878937	LINE|L2|L2	+	chr4	185585443	185812256	SORBS2|NM_001145670.1	-	185585443,185589678,185593885,185611779,185614830,185615044,185618584,185620062,185626831,185630548,185646667,185649466,185652661,185657423,185662103,185678422,185678795,185684753,185690561,185775226,185811663	185587688,185589785,185593935,185611980,185614959,185615159,185618631,185620151,185627019,185630598,185646782,185649656,185652728,185657596,185662242,185678547,185678822,185684842,185690611,185775366,185812256	0.624390
right_atrium_auricular_region_female_adult_53_years	chr9	89479889	89479890	89479889	-	High_confidence	17	17	17	0.686324	3.852169	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	0.941176
right_atrium_auricular_region_female_adult_53_years	chr18	31223733	31223747	31223746	-	RAMPAGE_only	5	8	14	0.565208	3.521641	chr18	31223533	31224064	DNA|hAT-Charlie|MER1A	+	chr18	31124515	31227726	STRG.30723.3	-	31124515,31131593,31132567,31133890,31134571,31139747,31140041,31141998,31143656,31145610,31148497,31154773,31156042,31157370,31159444,31162531,31227437	31130711,31131842,31132689,31134130,31134784,31139890,31140301,31142184,31143791,31145777,31148642,31154929,31156162,31157573,31159529,31162848,31227726	1.000000
right_atrium_auricular_region_female_adult_53_years	chr19	11507459	11507506	11507459	-	High_confidence	5	5	27	1.090044	4.133661	chr19	11507282	11507445	SINE|Alu|FRAM	-	chr19	11506074	11507709	ECSIT|ENST00000585898.1	-	11506074,11507456	11506428,11507709	0.518519
right_atrium_auricular_region_female_adult_53_years	chr14	103552590	103552625	103552624	+	High_confidence	11	11	46	1.857112	5.050341	chr14	103552569	103552683	LINE|L2|L2c	-	chr14	103552443	103587364	STRG.25890.28	+	103552443,103571622,103574106,103587273	103553862,103571820,103574170,103587364	0.956522
right_atrium_auricular_region_female_adult_53_years	chr17	3819059	3819060	3819059	-	High_confidence	7	9	11	0.444092	3.321928	chr17	3818803	3819275	DNA|TcMar-Tigger|Tigger17a	+	chr17	3818262	3819026	STRG.28731.7	-	3818262,3818811	3818572,3819026	0.727273
right_atrium_auricular_region_female_adult_53_years	chr15	57602713	57602714	57602713	+	RAMPAGE_only	109	110	136	5.490591	5.928724	chr15	57602679	57602910	SINE|MIR|MIR	+	chr15	57599410	57685360	STRG.26547.8	+	57599410,57604268,57618032,57621607,57625778,57629701,57632433,57633612,57637694,57639439,57661449,57674967,57684401	57599703,57604355,57618188,57621700,57625892,57629854,57632559,57633741,57637774,57639545,57661533,57675068,57685360	0.926471
right_atrium_auricular_region_female_adult_53_years	chr14	73463624	73463630	73463624	-	High_confidence	4	4	11	0.444092	3.121928	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73366896	73463625	AC005280.3|ENST00000556700.5	-	73366896,73409936,73462528,73463474	73366981,73410068,73462689,73463625	0.545455
right_atrium_auricular_region_female_adult_53_years	chr17	55612947	55612970	55612961	+	High_confidence	55	96	196	7.912911	6.711285	chr17	55612666	55612972	LTR|ERVL-MaLR|MLT1J2	-	chr17	55612960	55648702	STRG.29859.1	+	55612960,55617524,55648192	55613068,55617653,55648702	0.591837
right_lobe_of_liver2_female_adult_53_years	chr14	64453764	64453851	64453850	+	RAMPAGE_only	18	18	90	3.700853	4.923039	chr14	64453898	64454014	SINE|MIR|MIR3	+	chr14	64457996	64460003	MTHFD1|ENST00000554353.1	+	64457996,64459758	64458307,64460003	0.911111
right_lobe_of_liver2_female_adult_53_years	chr3	179333001	179333002	179333001	+	RAMPAGE_only	29	30	42	1.727065	4.021676	chr3	179332959	179333116	SINE|MIR|MIR1_Amn	-	chr3	179329633	179333730	ZNF639|ENST00000466663.1	+	179329633,179329933,179332988,179333268	179329728,179330055,179333123,179333730	0.857143
right_lobe_of_liver2_female_adult_53_years	chr11	67886471	67886535	67886471	+	High_confidence	12	12	48	1.973788	4.626296	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	1.000000
right_lobe_of_liver2_female_adult_53_years	chr14	94283719	94284086	94283719	-	RAMPAGE_only	62	74	864	35.528186	6.472892	chr14	94283344	94283825	DNA|TcMar-Tigger|MER44B	+	chr14	94283354	94290648	SERPINA10|ENST00000554173.1	-	94283354,94286107,94288285,94289875	94284156,94286258,94288559,94290648	0.973380
right_lobe_of_liver2_female_adult_53_years	chr3	149224221	149224226	149224225	+	High_confidence	208	208	429	17.640731	6.453092	chr3	149224217	149224520	SINE|Alu|AluY	+	chr3	149224138	149226687	STRG.13799.2	+	149224138,149224996,149226007	149224316,149225376,149226687	0.878788
right_lobe_of_liver2_female_adult_53_years	chr12	3110939	3110954	3110939	+	RAMPAGE_only	2	2	9	0.370085	3.000000	chr12	3110987	3111077	SINE|MIR|MIR3	+	chr12	3077384	3281756	TSPAN9|ENST00000649909.1	+	3077384,3083652,3278420,3278991,3280381,3281197,3281733	3077453,3083719,3278612,3279066,3280483,3281329,3281756	0.666667
right_lobe_of_liver2_female_adult_53_years	chr16	72014320	72014323	72014320	+	High_confidence	4	4	8	0.328965	2.807355	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.875000
right_lobe_of_liver2_female_adult_53_years	chr11	64242611	64242620	64242611	+	High_confidence	8	9	17	0.699050	3.734522	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	43525091	43525092	43525091	+	High_confidence	119	119	160	6.579294	6.247588	chr1	43524527	43525317	LINE|L2|L2c	-	chr1	43525186	43553519	PTPRF|ENST00000496043.5	+	43525186,43528656,43538197,43545030,43553491	43525257,43528756,43538277,43545166,43553519	0.825000
right_lobe_of_liver2_female_adult_53_years	chr1	166849991	166850016	166850015	+	RAMPAGE_only	7	7	13	0.534568	3.392747	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
right_lobe_of_liver2_female_adult_53_years	chr20	24930628	24930692	24930639	+	High_confidence	21	21	129	5.304556	5.788986	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930645	24932973	STRG.56800.1	+	24930645,24931346	24930774,24932973	0.992248
right_lobe_of_liver2_female_adult_53_years	chr11	2376160	2376200	2376179	+	High_confidence	23	30	118	4.852229	5.789426	chr11	2376100	2376285	DNA|hAT-Charlie|MER3	-	chr11	2376176	2397419	CD81|NM_001297649.1	+	2376176,2390411,2394094,2394971,2395415,2395868,2396627,2396803	2376357,2390526,2394192,2395046,2395520,2395970,2396714,2397419	0.771186
right_lobe_of_liver2_female_adult_53_years	chr2	55268641	55268727	55268722	-	High_confidence	6	6	27	1.110256	4.363713	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	0.962963
right_lobe_of_liver2_female_adult_53_years	chr1	19980361	19980363	19980362	-	High_confidence	19	30	30	1.233618	4.378783	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	0.933333
right_lobe_of_liver2_female_adult_53_years	chr9	114323575	114323611	114323610	+	High_confidence	4	5	15	0.616809	3.664498	chr9	114323548	114323622	SINE|MIR|MIR3	+	chr9	114323055	114326475	ORM1|ENST00000259396.8	+	114323055,114323662,114324017,114324789,114325048,114326291	114323247,114323805,114324088,114324897,114325152,114326475	0.800000
right_lobe_of_liver2_female_adult_53_years	chr7	38789810	38789813	38789812	-	RAMPAGE_only	20	22	30	1.233618	4.208966	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	0.933333
right_lobe_of_liver2_female_adult_53_years	chr15	30493734	30493758	30493747	+	RAMPAGE_only	5	5	23	0.945773	4.055958	chr15	30493661	30493815	DNA|hAT-Charlie|MER20	+	chr15	30484543	30513850	STRG.47057.2	+	30484543,30493588,30507376,30508402,30510127,30512646,30513631	30484686,30493816,30507954,30508557,30510229,30512788,30513850	1.000000
right_lobe_of_liver2_female_adult_53_years	chr9	72363490	72363500	72363490	-	High_confidence	4	4	11	0.452326	2.663533	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.818182
right_lobe_of_liver2_female_adult_53_years	chr1	21551266	21551289	21551266	+	High_confidence	116	126	635	26.111572	5.988559	chr1	21551216	21551436	LINE|L2|L2c	-	chr1	21551278	21578012	ALPL|ENST00000374832.5	+	21551278,21553977,21560625,21561096,21563109,21564040,21568103,21570304,21573664,21575732,21576521,21577382	21551428,21554142,21560745,21561212,21563284,21564216,21568247,21570374,21573799,21575924,21576641,21578012	0.908661
right_lobe_of_liver2_female_adult_53_years	chr17	4143196	4143215	4143199	+	High_confidence	77	79	198	8.141876	6.181346	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.994949
right_lobe_of_liver2_female_adult_53_years	chr10	30999457	30999520	30999519	-	High_confidence	19	27	75	3.084044	5.653786	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.546667
right_lobe_of_liver2_female_adult_53_years	chr11	61529561	61529629	61529561	-	High_confidence	13	13	75	3.084044	5.418534	chr11	61529333	61529542	SINE|MIR|MIRb	-	chr11	61515412	61530252	STRG.38234.6	-	61515412,61523074,61523826,61524362,61527914,61529361	61518731,61523274,61523941,61524532,61528185,61530252	0.853333
right_lobe_of_liver2_female_adult_53_years	chr14	73567616	73567617	73567616	+	High_confidence	47	47	51	2.097150	4.956247	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.941176
right_lobe_of_liver2_female_adult_53_years	chr15	101434981	101434997	101434996	-	RAMPAGE_only	5	5	11	0.452326	3.459432	chr15	101434980	101435066	LINE|L2|L2b	-	chr15	101303928	101443663	PCSK6|ENST00000398185.6	-	101303928,101307212,101313375,101318318,101322519,101324849,101326376,101331650,101331851,101366195,101370334,101389463,101393211,101398403,101427891,101429986,101431319,101431989,101443555	101305355,101307325,101313505,101318422,101322607,101325046,101326479,101331689,101332031,101366332,101370523,101389564,101393424,101398576,101427980,101430063,101431463,101432100,101443663	0.545455
right_lobe_of_liver2_female_adult_53_years	chr17	2975621	2975667	2975660	+	RAMPAGE_only	3	3	12	0.493447	3.418296	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.833333
right_lobe_of_liver2_female_adult_53_years	chrX	37888705	37888834	37888705	+	High_confidence	66	66	359	14.762290	5.692649	chrX	37888475	37888778	SINE|Alu|AluY	+	chrX	37888705	37898891	STRG.59484.1	+	37888705,37898848	37889158,37898891	0.947075
right_lobe_of_liver2_female_adult_53_years	chr1	59515627	59515654	59515653	+	High_confidence	83	83	208	8.553082	6.670263	chr1	59515522	59515871	LTR|ERVL-MaLR|THE1A	+	chr1	59515628	59762730	FGGY|NM_001278224.1	+	59515628,59554123,59607802,59625987,59638227,59660218,59667282,59674038,59757930,59762502	59515795,59554227,59607910,59626049,59638375,59660293,59667403,59674133,59757992,59762730	0.716346
right_lobe_of_liver2_female_adult_53_years	chr3	190615287	190615319	190615287	+	High_confidence	35	48	92	3.783094	5.643826	chr3	190615239	190615307	DNA|TcMar-Tigger|Tigger16b	+	chr3	190615307	190629732	IL1RAP|ENST00000412080.1	+	190615307,190620274,190623343,190627322,190629349	190615354,190620440,190623415,190627449,190629732	0.804348
right_lobe_of_liver2_female_adult_53_years	chr19	47871294	47871340	47871339	-	RAMPAGE_only	6	7	30	1.233618	3.923231	chr19	47871158	47871289	SINE|Alu|AluYg6	-	chr19	47870465	47886397	SULT2A1|NM_003167.3	-	47870465,47874656,47879035,47882083,47883576,47886121	47871567,47874834,47879130,47882210,47883785,47886397	0.800000
right_lobe_of_liver2_female_adult_53_years	chr11	123060137	123060257	123060137	-	High_confidence	110	131	848	34.870256	5.456016	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.520047
right_lobe_of_liver2_female_adult_53_years	chr3	27821518	27821545	27821538	+	RAMPAGE_only	9	9	25	1.028015	4.142915	chr3	27815983	27821983	LINE|L1|L1PA7	-	chr3	27802761	27860327	LINC01980|ENST00000425195.6	+	27802761,27824649,27848700,27860086	27802850,27824748,27848764,27860327	0.760000
right_lobe_of_liver2_female_adult_53_years	chr1	45522855	45522898	45522858	-	High_confidence	948	948	1796	73.852571	5.559566	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.990535
right_lobe_of_liver2_female_adult_53_years	chr12	123323698	123323739	123323698	-	RAMPAGE_only	4	4	19	0.781291	3.947703	chr12	123323348	123323653	SINE|Alu|AluY	-	chr12	123289108	123350441	SBNO1|ENST00000420886.6	-	123289108,123297977,123302823,123304581,123309309,123309488,123309709,123311054,123313619,123315372,123315547,123317220,123319899,123320431,123320698,123321534,123323679,123325501,123326151,123327425,123327706,123327891,123328733,123330418,123331241,123334052,123336394,123340987,123345257,123348028,123350309	123296050,123298171,123302900,123304719,123309402,123309583,123309856,123311129,123313719,123315444,123315660,123317356,123320031,123320607,123320866,123321732,123323831,123325599,123326334,123327579,123327812,123328027,123328895,123330509,123331375,123334213,123336491,123341088,123345570,123348133,123350441	0.947368
right_lobe_of_liver2_female_adult_53_years	chr9	39809803	39809859	39809858	-	High_confidence	4	5	26	1.069135	4.053509	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.846154
right_lobe_of_liver2_female_adult_53_years	chr19	33374482	33374493	33374486	+	High_confidence	2	2	7	0.287844	2.807355	chr19	33374489	33374531	LINE|L2|L2	+	chr19	33374523	33382686	CEBPG|NM_001252296.1	+	33374523,33379143	33374613,33382686	0.857143
right_lobe_of_liver2_female_adult_53_years	chr8	116648805	116648917	116648865	-	RAMPAGE_only	5	6	43	1.768185	4.684146	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.930233
right_lobe_of_liver2_female_adult_53_years	chr15	89198594	89198647	89198594	+	RAMPAGE_only	6	6	27	1.110256	4.323856	chr15	89198595	89198679	SINE|MIR|MIR3	+	chr15	89088149	89202360	ABHD2|NM_007011.7	+	89088149,89090282,89102499,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89202360	0.925926
right_lobe_of_liver2_female_adult_53_years	chr11	59041057	59041061	59041057	+	High_confidence	5	5	11	0.452326	2.921928	chr11	59041061	59041739	LTR|ERV1|MER57-int	+	chr11	59040925	59050971	STRG.38163.4	+	59040925,59042694,59043499,59049716,59050121,59050556	59041186,59042814,59043607,59049843,59050299,59050971	0.909091
right_lobe_of_liver2_female_adult_53_years	chr6	31186054	31186118	31186117	-	High_confidence	31	35	97	3.988697	5.642095	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31181910	31186385	STRG.22426.1	-	31181910	31186385	0.917526
right_lobe_of_liver2_female_adult_53_years	chr6	38687133	38687136	38687135	-	RAMPAGE_only	3	5	7	0.287844	2.584963	chr6	38687125	38687432	LTR|ERVL|LTR16C	+	chr6	38675942	38683215	GLO1|ENST00000470973.1	-	38675942,38682011,38682807	38677383,38682101,38683215	0.571429
right_lobe_of_liver2_female_adult_53_years	chr13	27445106	27445108	27445107	-	RAMPAGE_only	12	21	26	1.069135	4.286790	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	43247951	43247961	43247960	-	High_confidence	3	3	7	0.287844	2.584963	chr1	43247843	43248160	SINE|Alu|AluY	+	chr1	43186757	43248124	STRG.1030.2	-	43186757,43206345,43215265,43247759	43194949,43206392,43215393,43248124	0.571429
right_lobe_of_liver2_female_adult_53_years	chr22	39021122	39021142	39021122	+	High_confidence	2	2	8	0.328965	2.521641	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.875000
right_lobe_of_liver2_female_adult_53_years	chr9	91210555	91210593	91210592	+	High_confidence	18	24	80	3.289647	4.561719	chr9	91210576	91210702	SINE|MIR|MIR	+	chr9	91210538	91211452	STRG.33002.1	+	91210538	91211452	0.925000
right_lobe_of_liver2_female_adult_53_years	chr3	136252320	136252321	136252320	+	RAMPAGE_only	4	4	7	0.287844	2.807355	chr3	136252260	136252524	SINE|Alu|AluSx	-	chr3	136251242	136283914	PCCB|ENST00000462542.5	+	136251242,136255855,136256554,136260478,136261951,136283836	136251292,136255975,136256623,136260535,136262065,136283914	0.857143
right_lobe_of_liver2_female_adult_53_years	chr14	77736978	77737051	77736978	-	High_confidence	8	8	32	1.315859	3.936243	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.937500
right_lobe_of_liver2_female_adult_53_years	chr16	56384392	56384405	56384399	-	RAMPAGE_only	9	13	27	1.110256	4.162295	chr16	56383013	56384445	LINE|L2|L2a	+	chr16	56367290	56385972	AMFR|ENST00000566334.1	-	56367290,56369192,56385918	56367527,56369327,56385972	0.592593
right_lobe_of_liver2_female_adult_53_years	chr17	19030756	19030777	19030756	-	RAMPAGE_only	6	6	25	1.028015	3.938722	chr17	19030676	19030974	LINE|L2|L2a	+	chr17	19021862	19042485	GRAP|ENST00000395635.5	-	19021862,19024214,19035957,19041806,19042323	19022144,19024383,19036080,19041904,19042485	0.800000
right_lobe_of_liver2_female_adult_53_years	chr19	1880087	1880088	1880087	-	High_confidence	9	9	9	0.370085	2.947703	chr19	1880079	1880146	DNA|hAT-Ac|OldhAT1	+	chr19	1877203	1880017	ABHD17A|ENST00000592757.1	-	1877203,1877507,1878663,1879920	1877425,1877687,1878904,1880017	0.888889
right_lobe_of_liver2_female_adult_53_years	chr3	42770599	42770600	42770599	+	High_confidence	6063	6078	6164	253.467288	5.701835	chr3	42769529	42771022	LTR|ERV1|LTR12C	+	chr3	42770611	42773635	LOC729083|NR_122070.1	+	42770611,42773204	42771077,42773635	0.980857
right_lobe_of_liver2_female_adult_53_years	chr3	146222436	146222472	146222471	-	High_confidence	59	61	231	9.498855	5.985270	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146200008	146222433	PLSCR4|ENST00000481701.5	-	146200008,146201034,146206525,146220814,146222064,146222199	146200039,146201077,146206761,146220925,146222092,146222433	0.943723
right_lobe_of_liver2_female_adult_53_years	chr17	10723278	10723299	10723291	-	RAMPAGE_only	4	4	11	0.452326	2.921928	chr17	10722980	10723244	SINE|Alu|AluSc8	-	chr17	10714675	10730023	TMEM220|ENST00000455996.6	-	10714675,10723269,10725010,10726203,10729779	10715588,10723329,10725134,10726264,10730023	0.545455
right_lobe_of_liver2_female_adult_53_years	chr14	81427149	81427150	81427149	-	High_confidence	4	5	6	0.246724	2.584963	chr14	81426946	81427161	SINE|MIR|MIR	-	chr14	81260649	81427212	STON2|NM_033104.3	-	81260649,81276900,81370987,81395893,81398294,81427101	81270872,81278739,81371185,81396178,81398580,81427212	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	28974125	28974159	28974158	+	RAMPAGE_only	7	7	14	0.575688	3.392747	chr1	28973725	28974224	LINE|CR1|L3	-	chr1	28987497	29072224	EPB41|ENST00000645111.1	+	28987497,28993329,29011864,29015691,29018223,29030399,29033092,29035825,29039253,29053103,29058588,29058810,29060421,29064981,29068732,29070363	28987905,28993542,29011907,29015767,29018442,29030487,29033245,29035923,29039426,29053312,29058645,29058852,29060484,29065158,29068768,29072224	0.500000
right_lobe_of_liver2_female_adult_53_years	chr4	154565206	154565231	154565206	+	RAMPAGE_only	26	26	89	3.659732	5.301537	chr4	154565068	154565287	SINE|MIR|MIR	-	chr4	154563010	154566522	FGB|ENST00000498375.2	+	154563010,154565185,154566488	154563132,154565999,154566522	0.955056
right_lobe_of_liver2_female_adult_53_years	chr6	131033791	131033795	131033794	-	RAMPAGE_only	5	6	14	0.575688	3.546594	chr6	131033291	131033999	LINE|L1|L1MB4	+	chr6	130956024	131015842	EPB41L2|ENST00000526983.1	-	130956024,131015280,131015818	130956499,131015333,131015842	0.500000
right_lobe_of_liver2_female_adult_53_years	chr16	15085638	15085640	15085638	-	RAMPAGE_only	6	8	12	0.493447	2.663533	chr16	15085367	15085615	SINE|Alu|AluJr	-	chr16	15074676	15083750	RRN3|ENST00000561685.1	-	15074676,15076557,15079997,15083512	15074861,15076650,15080096,15083750	0.583333
right_lobe_of_liver2_female_adult_53_years	chr17	58535476	58535515	58535508	-	RAMPAGE_only	18	18	65	2.672838	5.733831	chr17	58535378	58535602	LINE|CR1|L3	-	chr17	58520249	58532084	SEPT4|NM_080416.3	-	58520249,58520742,58520997,58521253,58521544,58521735,58521966,58525077,58525694,58526219,58526681,58531960	58520485,58520842,58521160,58521350,58521646,58521853,58522101,58525201,58525781,58526313,58526978,58532084	0.846154
right_lobe_of_liver2_female_adult_53_years	chr3	194247637	194247646	194247645	+	High_confidence	50	56	119	4.893350	5.539337	chr3	194247526	194247735	SINE|MIR|MIR	-	chr3	194247647	194257772	LINC02037|ENST00000455821.1	+	194247647,194249595,194255230,194257184	194247821,194249902,194255356,194257772	0.806723
right_lobe_of_liver2_female_adult_53_years	chr10	50248793	50248796	50248793	-	High_confidence	2	2	7	0.287844	2.584963	chr10	50248737	50248942	DNA|hAT-Charlie|MER117	-	chr10	50182777	50248610	ASAH2|ENST00000395526.8	-	50182777,50189498,50192652,50196772,50199050,50202828,50203639,50204860,50205981,50210822,50211029,50212971,50214742,50218509,50233183,50234424,50235887,50243201,50245221,50248483	50187504,50189587,50192712,50196919,50199146,50202924,50203679,50204955,50206097,50210904,50211134,50213058,50214868,50218630,50233261,50234552,50236064,50243351,50245454,50248610	0.857143
right_lobe_of_liver2_female_adult_53_years	chr5	65988658	65988682	65988681	+	High_confidence	2	3	6	0.246724	2.584963	chr5	65988722	65989005	SINE|Alu|AluJb	+	chr5	65988632	66078936	ERBIN|ENST00000508515.1	+	65988632,65992709,65994746,66012048,66013548,66014668,66021321,66023289,66024305,66025479,66025847,66026301,66028273,66038382,66043076,66044136,66046352,66048666,66050782,66053405,66076315,66076874,66078422	65988682,65992907,65994864,66012127,66013638,66014725,66021385,66023364,66024450,66025552,66025977,66026417,66028343,66038482,66043198,66044310,66046538,66048781,66050966,66054951,66076408,66076949,66078936	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	65601850	65601958	65601890	+	RAMPAGE_only	20	22	119	4.893350	5.477094	chr1	65601809	65601923	SINE|MIR|MIR1_Amn	-	chr1	65565545	65626234	LEPR|ENST00000371058.1	+	65565545,65570472,65572325,65592656,65596447,65598659,65601391,65601842,65605037,65608752,65609946,65610213,65616007,65617963,65619927,65621352,65622905,65626122	65565605,65570802,65572449,65592865,65596593,65598804,65601682,65601960,65605237,65608901,65610106,65610296,65616224,65618146,65620023,65621458,65622981,65626234	0.991597
right_lobe_of_liver2_female_adult_53_years	chr4	102431244	102431249	102431244	-	High_confidence	2	2	7	0.287844	2.584963	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.714286
right_lobe_of_liver2_female_adult_53_years	chr16	20575574	20575575	20575574	-	High_confidence	5	5	7	0.287844	2.584963	chr16	20575366	20575775	LTR|ERVL|MLT2A1	-	chr16	20548379	20576281	ACSM2B|ENST00000569327.5	-	20548379,20552143,20553776,20554034,20555268,20559236,20564668,20576206	20548473,20552297,20553920,20554177,20555476,20559447,20564853,20576281	0.714286
right_lobe_of_liver2_female_adult_53_years	chr1	232676053	232676100	232676053	-	RAMPAGE_only	5	5	27	1.110256	4.469670	chr1	232675731	232676254	LTR|ERV1|LTR36	-	chr1	232397980	232576370	STRG.5499.1	-	232397980,232402391,232403447,232415493,232425588,232428410,232432246,232439107,232441290,232441767,232443601,232445528,232460886,232464839,232471370,232479626,232483791,232490873,232493526,232513856,232533489,232574173,232575552	232399273,232402473,232403571,232415625,232425808,232428564,232432471,232439496,232441394,232441868,232443685,232445786,232461161,232465416,232471528,232479730,232483966,232491062,232493660,232515608,232533583,232574222,232576370	0.555556
right_lobe_of_liver2_female_adult_53_years	chr9	95143586	95143592	95143586	-	High_confidence	4	5	10	0.411206	3.121928	chr9	95142820	95143604	LTR|ERVL|MER21C	-	chr9	95099054	95144162	STRG.33194.4	-	95099054,95107065,95111462,95114628,95117314,95125085,95126528,95135345,95143523	95101850,95107269,95111637,95114710,95117390,95125185,95126581,95135502,95144162	0.900000
right_lobe_of_liver2_female_adult_53_years	chr6	36914686	36914687	36914686	+	RAMPAGE_only	7	10	11	0.452326	2.721928	chr6	36914707	36914996	SINE|Alu|AluSz6	+	chr6	36885863	36928964	C6orf89|NM_152734.3	+	36885863,36899425,36902220,36914283,36914553,36916444,36919577,36923346	36886028,36899633,36902434,36914435,36914693,36916574,36919701,36928964	0.909091
right_lobe_of_liver2_female_adult_53_years	chr18	199279	199314	199279	+	RAMPAGE_only	5	6	19	0.781291	3.681881	chr18	199329	199945	DNA|TcMar-Tigger|Tigger17a	+	chr18	196538	211268	USP14|ENST00000578786.1	+	196538,197615,198046,199201,202879,203097,204563,209970,210385,211132	196767,197696,198132,199316,202945,203190,204692,210031,210493,211268	0.947368
right_lobe_of_liver2_female_adult_53_years	chr4	73590674	73590695	73590674	-	High_confidence	24	25	97	3.988697	5.949342	chr4	73590575	73590742	LTR|ERVL|LTR86A2	+	chr4	73576432	73590674	STRG.16020.2	-	73576432,73576612,73581816,73582188,73585179,73587839,73590585	73576507,73576731,73581868,73582290,73585364,73587934,73590674	0.773196
right_lobe_of_liver2_female_adult_53_years	chr3	98733221	98733265	98733230	+	High_confidence	5	5	22	0.904653	4.121928	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.727273
right_lobe_of_liver2_female_adult_53_years	chr3	33864011	33864110	33864065	+	RAMPAGE_only	5	5	40	1.644823	4.342497	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.950000
right_lobe_of_liver2_female_adult_53_years	chr7	90154183	90154203	90154183	+	High_confidence	4	4	8	0.328965	3.000000	chr7	90154032	90154206	DNA|hAT-Charlie|MER5A	+	chr7	90154374	90164827	STEAP1|ENST00000297205.6	+	90154374,90159757,90160804,90161913,90164476	90154543,90159872,90161317,90162078,90164827	1.000000
right_lobe_of_liver2_female_adult_53_years	chr8	118356833	118356861	118356833	-	RAMPAGE_only	20	20	43	1.768185	4.624111	chr8	118356600	118357114	LINE|L2|L2b	+	chr8	118326678	118328642	STRG.30806.1	-	118326678	118328642	0.558140
right_lobe_of_liver2_female_adult_53_years	chr9	34641294	34641330	34641329	+	RAMPAGE_only	3	3	12	0.493447	3.022055	chr9	34641261	34641421	SINE|Alu|AluJb	-	chr9	34646588	34650598	GALT|NM_000155.3	+	34646588,34647088,34647491,34647656,34647831,34648114,34648333,34648761,34648997,34649409,34650368	34646786,34647258,34647567,34647705,34647961,34648171,34648456,34648894,34649081,34649564,34650598	0.916667
right_lobe_of_liver2_female_adult_53_years	chr14	101731402	101731414	101731413	+	High_confidence	17	17	27	1.110256	4.392747	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.851852
right_lobe_of_liver2_female_adult_53_years	chr19	40280810	40280832	40280810	-	High_confidence	12	15	37	1.521462	3.524117	chr19	40280545	40281038	LINE|L2|L2a	+	chr19	40242039	40280832	AKT2|ENST00000486368.6	-	40242039,40242533,40255157,40256925,40265221,40280781	40242069,40242687,40255269,40257054,40265351,40280832	0.945946
right_lobe_of_liver2_female_adult_53_years	chr7	2242922	2242923	2242922	+	High_confidence	7	7	7	0.287844	2.521641	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
right_lobe_of_liver2_female_adult_53_years	chr6	30724387	30724452	30724451	+	RAMPAGE_only	10	10	45	1.850426	4.707677	chr6	30724489	30724580	LINE|L2|L2a	+	chr6	30721698	30725426	TUBB|ENST00000396384.1	+	30721698,30722536,30722917,30723339	30722214,30722645,30723028,30725426	0.933333
right_lobe_of_liver2_female_adult_53_years	chr3	42770654	42770744	42770676	+	High_confidence	7	7	86	3.536370	4.610147	chr3	42769529	42771022	LTR|ERV1|LTR12C	+	chr3	42770611	42773635	LOC729083|NR_122070.1	+	42770611,42773204	42771077,42773635	0.953488
right_lobe_of_liver2_female_adult_53_years	chr3	136625270	136625311	136625270	-	RAMPAGE_only	91	96	139	5.715761	5.748297	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.935252
right_lobe_of_liver2_female_adult_53_years	chr10	95516957	95516975	95516957	-	RAMPAGE_only	31	37	117	4.811108	6.194944	chr10	95516832	95516961	DNA|TcMar-Tigger|Tigger16a	-	chr10	95321176	95520340	STRG.36174.5	-	95321176,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95381684,95383984,95384237,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95437489,95441125,95491034,95516756	95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95381799,95384114,95384285,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95437555,95441180,95491120,95520340	0.735043
right_lobe_of_liver2_female_adult_53_years	chr2	38408711	38408781	38408716	+	High_confidence	13	13	99	4.070938	5.395087	chr2	38408662	38408966	SINE|Alu|AluSz	-	chr2	38408706	38412615	STRG.6634.1	+	38408706,38409092,38411790,38412377	38408978,38409183,38412046,38412615	1.000000
right_lobe_of_liver2_female_adult_53_years	chr9	37426538	37426647	37426623	+	RAMPAGE_only	10	10	58	2.384994	5.436732	chr9	37426667	37426970	SINE|Alu|AluSx3	+	chr9	37427705	37436989	GRHPR|ENST00000497693.1	+	37427705,37436660	37432138,37436989	0.965517
right_lobe_of_liver2_female_adult_53_years	chr4	152412528	152412529	152412528	-	High_confidence	7	8	9	0.370085	3.000000	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.888889
right_lobe_of_liver2_female_adult_53_years	chr15	60402874	60402893	60402886	-	High_confidence	23	34	84	3.454129	5.446222	chr15	60402666	60403161	LINE|L2|L2c	+	chr15	60364428	60402883	ANXA2|ENST00000557904.5	-	60364428,60382341,60386027,60402768	60364523,60382441,60386086,60402883	0.773810
right_lobe_of_liver2_female_adult_53_years	chr15	75626279	75626305	75626304	-	High_confidence	17	17	26	1.069135	3.917189	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598507	75626346	STRG.48735.4	-	75598507,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626346	0.961538
right_lobe_of_liver2_female_adult_53_years	chr7	134432393	134432436	134432394	-	High_confidence	4	6	18	0.740171	3.499228	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.722222
right_lobe_of_liver2_female_adult_53_years	chr11	65440147	65440387	65440370	+	RAMPAGE_only	24	25	147	6.044726	5.486507	chr11	65440323	65440484	SINE|Alu|AluJo	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.993197
right_lobe_of_liver2_female_adult_53_years	chr6	63516399	63516443	63516442	+	RAMPAGE_only	9	11	47	1.932668	4.367899	chr6	63516454	63516579	SINE|MIR|MIR	+	chr6	63521745	63583377	PTP4A1|ENST00000648894.1	+	63521745,63527818,63532336,63576435,63578436,63578897,63579256,63580056	63521826,63528084,63532530,63576985,63578529,63579028,63579331,63583377	0.680851
right_lobe_of_liver2_female_adult_53_years	chr9	123179220	123179221	123179220	-	RAMPAGE_only	4	6	7	0.287844	2.807355	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	1.000000
right_lobe_of_liver2_female_adult_53_years	chr9	114823198	114823199	114823198	-	RAMPAGE_only	12	12	12	0.493447	3.022055	chr9	114823066	114823278	DNA|hAT-Charlie|MER20	-	chr9	114060126	114078472	AMBP|ENST00000265132.7	-	114060126,114060924,114061423,114062676,114069698,114072924,114074035,114074959,114076597,114078092	114060270,114061098,114061591,114062758,114069745,114073026,114074152,114075036,114076740,114078472	1.000000
right_lobe_of_liver2_female_adult_53_years	chr11	118212198	118212208	118212198	-	High_confidence	2	2	6	0.246724	2.584963	chr11	118212116	118212308	SINE|MIR|MIRb	-	chr11	118205658	118212470	JAML|ENST00000531536.1	-	118205658,118210486,118212406	118205991,118210712,118212470	0.833333
right_lobe_of_liver2_female_adult_53_years	chr2	34677552	34677553	34677552	+	High_confidence	7	7	10	0.411206	3.121928	chr2	34677192	34677662	LTR|ERV1|LTR2B	+	chr2	34677554	34737468	LINC01320|ENST00000625995.2	+	34677554,34710451,34713578,34732447,34735646,34737320	34677927,34710513,34713773,34732557,34735686,34737468	0.900000
right_lobe_of_liver2_female_adult_53_years	chr4	152486189	152486199	152486198	-	RAMPAGE_only	4	4	11	0.452326	2.721928	chr4	152485881	152487007	DNA|TcMar-Tigger|Tigger3b	-	chr4	152321257	152535033	FBXW7|NM_033632.3	-	152321257,152324183,152326005,152328207,152329671,152330731,152332595,152337801,152346929,152350041,152411302,152534940	152323149,152324394,152326231,152328389,152329785,152330868,152332719,152337936,152347071,152350124,152411872,152535033	0.727273
right_lobe_of_liver2_female_adult_53_years	chr1	67522360	67522366	67522360	+	High_confidence	141	141	233	9.581096	6.127106	chr1	67522395	67522435	LTR|ERVL|LTR47A	+	chr1	67522353	67532326	LINC01702|ENST00000230113.4	+	67522353,67527377,67529652,67530314,67532105	67522398,67527437,67529749,67530378,67532326	0.909871
right_lobe_of_liver2_female_adult_53_years	chr1	56969313	56969382	56969381	+	RAMPAGE_only	6	6	34	1.398100	4.631981	chr1	56969042	56969527	LTR|ERVL-MaLR|MLT1H	-	chr1	56963920	56987656	STRG.1475.1	+	56963920,56969579,56987426	56964057,56969756,56987656	0.735294
right_lobe_of_liver2_female_adult_53_years	chr6	54062909	54062941	54062940	+	High_confidence	25	26	112	4.605506	5.472846	chr6	54062920	54063225	SINE|Alu|AluSq2	+	chr6	54062813	54202206	STRG.23010.3	+	54062813,54121446,54124472,54149055,54160366,54169527,54189869,54202104	54063245,54121602,54124865,54149127,54160432,54169572,54189914,54202206	0.955357
right_lobe_of_liver2_female_adult_53_years	chr19	3062922	3062978	3062922	-	High_confidence	19	20	66	2.713959	4.830632	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.939394
right_lobe_of_liver2_female_adult_53_years	chr1	155304810	155304822	155304810	+	RAMPAGE_only	18	18	68	2.796200	5.471992	chr1	155304792	155304940	SINE|MIR|MIRb	-	chr1	155308747	155320666	FDPS|NM_002004.3	+	155308747,155309788,155310042,155312254,155317940,155318168,155318664,155318855,155319610,155319793,155320408	155308965,155309965,155310205,155312395,155318021,155318291,155318753,155318928,155319688,155319928,155320666	0.544118
right_lobe_of_liver2_female_adult_53_years	chrX	5726324	5726325	5726324	-	High_confidence	7	7	11	0.452326	3.095795	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.818182
right_lobe_of_liver2_female_adult_53_years	chr13	21533619	21533620	21533619	-	RAMPAGE_only	13	13	15	0.616809	3.456565	chr13	21533324	21533620	SINE|Alu|AluY	-	chr13	20723558	20723943	STRG.43233.1	-	20723558	20723943	1.000000
right_lobe_of_liver2_female_adult_53_years	chr7	90463197	90463212	90463211	+	RAMPAGE_only	8	8	17	0.699050	4.087463	chr7	90463115	90463485	LTR|ERVL-MaLR|THE1C	+	chr7	90466423	90790628	CDK14|ENST00000449528.5	+	90466423,90479227,90494366,90563734,90604217,90726566,90747680,90790572	90466513,90479274,90494430,90563863,90604249,90726812,90747775,90790628	0.529412
right_lobe_of_liver2_female_adult_53_years	chr2	187513638	187513653	187513652	-	High_confidence	11	15	45	1.850426	4.462288	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	0.888889
right_lobe_of_liver2_female_adult_53_years	chr5	95509594	95509671	95509594	-	RAMPAGE_only	6	6	28	1.151376	4.324863	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95502902	95516674	TTC37|ENST00000508181.5	-	95502902,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524	95503003,95503938,95506992,95509687,95512618,95513645,95514923,95516409,95516674	0.607143
right_lobe_of_liver2_female_adult_53_years	chr21	33931449	33931478	33931449	+	High_confidence	2	2	9	0.370085	2.947703	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931213	33971186	LINC00649|ENST00000400353.6	+	33931213,33945809,33969236	33931267,33945895,33971186	0.555556
right_lobe_of_liver2_female_adult_53_years	chr3	52615411	52615427	52615426	-	High_confidence	5	5	10	0.411206	2.947703	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.800000
right_lobe_of_liver2_female_adult_53_years	chr9	130459505	130459506	130459505	+	High_confidence	15	15	15	0.616809	3.773557	chr9	130459449	130459734	SINE|Alu|AluSz	-	chr9	130458517	130479898	ASS1|ENST00000467695.5	+	130458517,130464110,130466724,130470833,130471484,130476870,130479715	130458589,130464167,130466799,130470904,130471515,130476961,130479898	0.800000
right_lobe_of_liver2_female_adult_53_years	chr5	173790915	173790981	173790930	-	High_confidence	58	59	464	19.079952	7.174484	chr5	173790732	173790899	DNA|hAT-Tip100|MER115	-	chr5	173786927	173790925	LINC01485|ENST00000523617.5	-	173786927,173787688,173790635,173790808	173787247,173787745,173790727,173790925	0.743534
right_lobe_of_liver2_female_adult_53_years	chr4	39032918	39032942	39032941	-	High_confidence	6	6	22	0.904653	3.970573	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	38993734	39032922	TMEM156|ENST00000344606.6	-	38993734,38998723,39032225,39032641	38993998,38998909,39032443,39032922	0.772727
right_lobe_of_liver2_female_adult_53_years	chr8	28084056	28084108	28084069	-	High_confidence	7	8	54	2.220512	5.196648	chr8	28084027	28084332	SINE|Alu|AluSx1	+	chr8	28021963	28083871	NUGGC|ENST00000413272.6	-	28021963,28026961,28029265,28030309,28031242,28033539,28041050,28045526,28047506,28055964,28058257,28060425,28064521,28067513,28068215,28069543,28070251,28074367,28083774	28023462,28027052,28029402,28030418,28031381,28033697,28041215,28045660,28047612,28056054,28058276,28060601,28064731,28067744,28068438,28069652,28070356,28074456,28083871	0.666667
right_lobe_of_liver2_female_adult_53_years	chr3	187021850	187021852	187021851	+	High_confidence	5	9	9	0.370085	3.169925	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	1.000000
right_lobe_of_liver2_female_adult_53_years	chr19	9140390	9140428	9140393	+	High_confidence	30	30	114	4.687747	5.455701	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.824561
right_lobe_of_liver2_female_adult_53_years	chr1	148900909	148900917	148900916	+	RAMPAGE_only	4	6	11	0.452326	3.459432	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148889783	148932725	PDE4DIP|ENST00000612094.1	+	148889783,148929196,148932112	148889894,148931923,148932725	0.545455
right_lobe_of_liver2_female_adult_53_years	chr7	101218396	101218418	101218396	-	High_confidence	6	6	15	0.616809	3.807355	chr7	101218298	101218575	SINE|Alu|AluJr	-	chr7	101217422	101218366	PLOD3|ENST00000481461.1	-	101217422,101218279	101217899,101218366	0.600000
right_lobe_of_liver2_female_adult_53_years	chrX	147877961	147877974	147877973	+	RAMPAGE_only	31	38	75	3.084044	5.549701	chrX	147877684	147878099	LTR|ERVL-MaLR|MSTB	+	chrX	147884730	147886121	STRG.61255.3	+	147884730	147886121	0.506667
right_lobe_of_liver2_female_adult_53_years	chr7	27617808	27617842	27617841	-	RAMPAGE_only	10	10	31	1.274738	4.651084	chr7	27617476	27617882	LINE|L1|L1M2	+	chr7	27525474	27662868	HIBADH|ENST00000428288.2	-	27525474,27531191,27538340,27542966,27629370,27632335,27662697	27526372,27531348,27538417,27543100,27629492,27632445,27662868	0.677419
right_lobe_of_liver2_female_adult_53_years	chr3	139344537	139344573	139344547	+	High_confidence	270	270	568	23.356492	5.990553	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.957746
right_lobe_of_liver2_female_adult_53_years	chr9	101385007	101385008	101385007	-	High_confidence	22652	22965	24772	1018.639139	6.478239	chr9	101384858	101386000	LTR|ERVK|MER11A	-	chr9	101360416	101385005	BAAT|NM_001701.3	-	101360416,101368119,101370938,101384854	101363015,101368322,101371463,101385005	0.909373
right_lobe_of_liver2_female_adult_53_years	chr22	24572869	24572903	24572902	+	RAMPAGE_only	5	5	12	0.493447	3.277613	chr22	24572952	24573216	SINE|Alu|AluJr	+	chr22	24555649	24574964	SNRPD3|NM_001278656.1	+	24555649,24557656,24567983,24571915	24556057,24557800,24568176,24574964	0.916667
right_lobe_of_liver2_female_adult_53_years	chr20	50172566	50172578	50172566	+	High_confidence	3	3	12	0.493447	3.277613	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.666667
right_lobe_of_liver2_female_adult_53_years	chr6	87784953	87784991	87784990	+	High_confidence	8	8	16	0.657929	3.875000	chr6	87784468	87785005	LTR|ERVL|LTR16E2	-	chr6	87784859	87911731	LOC101928911|NR_110869.1	+	87784859,87785110,87909781,87910678,87911651	87784967,87785262,87909914,87910798,87911731	0.500000
right_lobe_of_liver2_female_adult_53_years	chr11	58942564	58942580	58942564	+	High_confidence	7	7	19	0.781291	3.511085	chr11	58942450	58943108	LINE|L2|L2a	-	chr11	58943248	58956406	GLYATL1|ENST00000527708.5	+	58943248,58943542,58947045,58947857,58954769,58955175,58955609	58943322,58943666,58947165,58947965,58954896,58955353,58956406	1.000000
right_lobe_of_liver2_female_adult_53_years	chr10	79424604	79424649	79424648	-	RAMPAGE_only	18	18	37	1.521462	4.499598	chr10	79424376	79424743	LINE|L2|L2	+	chr10	79386036	79444219	ZCCHC24|ENST00000372333.3	-	79386036,79394275,79432557,79444101	79386458,79394440,79432758,79444219	0.756757
right_lobe_of_liver2_female_adult_53_years	chr11	33770746	33770766	33770765	-	RAMPAGE_only	3	3	14	0.575688	3.521641	chr11	33770411	33770718	LINE|L2|L2c	-	chr11	33740938	33774347	FBXO3|ENST00000526785.5	-	33740938,33747129,33748776,33750538,33751522,33754454,33755770,33758486,33768850,33770740	33742084,33747320,33748892,33750661,33751607,33754500,33755975,33758601,33769014,33774347	1.000000
right_lobe_of_liver2_female_adult_53_years	chr9	26936429	26936458	26936457	-	RAMPAGE_only	6	6	12	0.493447	2.913977	chr9	26936385	26936858	LINE|L1|L1M4c	+	chr9	26925892	26946983	PLAA|ENST00000523212.1	-	26925892,26926392,26928099,26928307,26935012,26946896	26925960,26926560,26928220,26928408,26935197,26946983	0.916667
right_lobe_of_liver2_female_adult_53_years	chr2	159769479	159769772	159769543	-	RAMPAGE_only	14	15	167	6.867138	5.555272	chr2	159769360	159769643	SINE|Alu|AluSx1	+	chr2	159768852	159798242	CD302|ENST00000259053.5	-	159768852,159777937,159780004,159780881,159783358,159798131	159772053,159777964,159780178,159780998,159783469,159798242	0.982036
right_lobe_of_liver2_female_adult_53_years	chr5	172958875	172958919	172958918	+	High_confidence	23	23	77	3.166285	4.961546	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	1.000000
right_lobe_of_liver2_female_adult_53_years	chr7	155243603	155243644	155243643	-	RAMPAGE_only	2	2	8	0.328965	2.521641	chr7	155240897	155243674	LTR|ERVK|HERVK9-int	-	chr7	155238152	155254173	STRG.28760.3	-	155238152,155254015	155253532,155254173	0.875000
right_lobe_of_liver2_female_adult_53_years	chr11	126327868	126327900	126327899	+	High_confidence	35	41	189	7.771791	6.532521	chr11	126327772	126328221	LINE|L2|L2a	-	chr11	126327865	126345754	DCPS|ENST00000648516.1	+	126327865,126328744,126330193,126331404,126338285,126343306,126345346	126328057,126328888,126330436,126331550,126338399,126343417,126345754	0.783069
right_lobe_of_liver2_female_adult_53_years	chr11	65431602	65431973	65431719	+	RAMPAGE_only	17	19	228	9.375493	6.529974	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
right_lobe_of_liver2_female_adult_53_years	chr19	12800921	12800945	12800944	-	High_confidence	7	8	22	0.904653	3.684184	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.909091
right_lobe_of_liver2_female_adult_53_years	chr12	118139096	118139097	118139096	+	High_confidence	25	25	26	1.069135	4.373661	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.884615
right_lobe_of_liver2_female_adult_53_years	chr21	22062638	22062648	22062638	-	High_confidence	86	91	247	10.156785	6.215543	chr21	22062350	22062974	LINE|L2|L2a	+	chr21	22035028	22062948	STRG.57630.3	-	22035028,22042944,22062008	22041435,22043087,22062948	0.931174
right_lobe_of_liver2_female_adult_53_years	chr11	43703321	43703322	43703321	+	RAMPAGE_only	4	4	6	0.246724	2.584963	chr11	43703200	43703493	SINE|Alu|AluYa5	-	chr11	43680592	43856619	HSD17B12|NM_016142.2	+	43680592,43750910,43754045,43798319,43815436,43816346,43830975,43838316,43839998,43854714,43855143	43680987,43750957,43754121,43798427,43815501,43816391,43831010,43838398,43840064,43854864,43856619	1.000000
right_lobe_of_liver2_female_adult_53_years	chr2	119476595	119476596	119476595	+	High_confidence	4	4	7	0.287844	2.807355	chr2	119476396	119476640	LTR|Gypsy|MamGypLTR3	+	chr2	119476515	119487364	STRG.8205.1	+	119476515,119485838	119476949,119487364	1.000000
right_lobe_of_liver2_female_adult_53_years	chr4	69058365	69058367	69058365	-	High_confidence	4	8	12	0.493447	3.584963	chr4	69058116	69058445	LTR|ERV1|HERV3-int	+	chr4	69046064	69058357	STRG.15930.1	-	69046064,69058316	69047119,69058357	0.833333
right_lobe_of_liver2_female_adult_53_years	chr6	31587243	31587275	31587274	+	High_confidence	7	10	28	1.151376	3.930270	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	0.928571
right_lobe_of_liver2_female_adult_53_years	chr11	61488885	61488896	61488885	+	High_confidence	4	4	9	0.370085	2.750000	chr11	61488729	61489022	LINE|L2|L2b	-	chr11	61488841	61490931	PPP1R32|ENST00000366212.8	+	61488841,61489781,61490500,61490813	61488962,61489946,61490584,61490931	0.888889
right_lobe_of_liver2_female_adult_53_years	chr1	6820193	6820194	6820193	+	RAMPAGE_only	9	9	11	0.452326	3.321928	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.545455
right_lobe_of_liver2_female_adult_53_years	chr4	86453184	86453196	86453195	-	High_confidence	4	5	12	0.493447	2.845351	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016074	86453196	MAPK10|ENST00000641854.1	-	86016074,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86107352,86159467,86194407,86354644,86453196	0.833333
right_lobe_of_liver2_female_adult_53_years	chr6	88662481	88662482	88662481	+	High_confidence	121	129	136	5.592400	6.110604	chr6	88662198	88662592	LTR|ERV1|LTR2C	+	chr6	88662467	88670909	STRG.23591.1	+	88662467,88664476	88662858,88670909	0.801471
right_lobe_of_liver2_female_adult_53_years	chr3	33130035	33130063	33130062	+	RAMPAGE_only	4	4	16	0.657929	3.875000	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	1.000000
right_lobe_of_liver2_female_adult_53_years	chr12	127060611	127060614	127060613	+	High_confidence	8	14	14	0.575688	3.324863	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060519	127061167	STRG.43102.1	+	127060519	127061167	0.857143
right_lobe_of_liver2_female_adult_53_years	chr11	95794288	95794358	95794354	+	High_confidence	49	52	372	15.296858	6.039913	chr11	95794328	95794625	LINE|L1|L1M5	-	chr11	95794164	95818903	STRG.39588.10	+	95794164,95799231,95812931,95813467,95817786,95818826	95794533,95799388,95813111,95813589,95817903,95818903	0.948925
right_lobe_of_liver2_female_adult_53_years	chr19	51795135	51795187	51795135	+	High_confidence	3	3	19	0.781291	3.576618	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795145	51826190	FPR3|NM_002030.4	+	51795145,51823738	51795331,51826190	0.894737
right_lobe_of_liver2_female_adult_53_years	chr1	179877288	179877295	179877288	-	High_confidence	11	12	19	0.781291	3.932138	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179839966	179877772	STRG.4195.2	-	179839966,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877772	1.000000
right_lobe_of_liver2_female_adult_53_years	chr20	40004279	40004365	40004317	+	High_confidence	92	94	293	12.048331	6.945024	chr20	40004094	40004398	LINE|L1|L1PA13	-	chr20	40004289	40021948	STRG.57064.1	+	40004289,40006262,40007902,40010128	40004491,40006358,40008459,40021948	0.604096
right_lobe_of_liver2_female_adult_53_years	chrX	47179150	47179159	47179158	+	High_confidence	3	4	9	0.370085	2.500000	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	0.888889
right_lobe_of_liver2_female_adult_53_years	chr3	126197910	126197956	126197910	-	High_confidence	24	24	58	2.384994	5.185816	chr3	126197802	126198236	LTR|ERV1|MER57A1	-	chr3	126158597	126197941	ALDH1L1|ENST00000511283.2	-	126158597,126159382,126160852,126197734	126158639,126159566,126161002,126197941	0.517241
right_lobe_of_liver2_female_adult_53_years	chr10	5199351	5199382	5199370	+	RAMPAGE_only	4	6	25	1.028015	4.213661	chr10	5199283	5200128	LTR|ERV1|LTR1A2	+	chr10	5196834	5218947	AKR1C4|NM_001818.3	+	5196834,5200180,5204376,5205756,5206274,5212615,5212993,5216710,5218717	5196951,5200348,5204493,5205834,5206397,5212725,5213159,5216793,5218947	0.960000
right_lobe_of_liver2_female_adult_53_years	chr7	66150625	66150632	66150631	+	High_confidence	3	3	8	0.328965	2.807355	chr7	66150546	66150667	SINE|MIR|MIR3	+	chr7	66150662	66152652	CRCP|ENST00000492264.1	+	66150662,66152207	66150948,66152652	0.875000
right_lobe_of_liver2_female_adult_53_years	chr1	56969425	56969448	56969425	+	RAMPAGE_only	4	4	8	0.328965	2.500000	chr1	56969042	56969527	LTR|ERVL-MaLR|MLT1H	-	chr1	56963920	56987656	STRG.1475.1	+	56963920,56969579,56987426	56964057,56969756,56987656	0.875000
right_lobe_of_liver2_female_adult_53_years	chr15	85781184	85781210	85781209	-	High_confidence	9	9	15	0.616809	3.189898	chr15	85781203	85781463	DNA|hAT-Charlie|Charlie1a	-	chr15	85759329	85781084	STRG.49038.3	-	85759329,85768016,85780625	85761011,85769820,85781084	1.000000
right_lobe_of_liver2_female_adult_53_years	chr7	76134260	76134314	76134284	-	RAMPAGE_only	10	10	40	1.644823	4.493943	chr7	76133955	76134671	LINE|L1|L1MD2	+	chr7	76113025	76135521	STRG.26820.2	-	76113025,76128619,76131987,76134208,76135218	76117889,76128782,76132176,76134403,76135521	0.900000
right_lobe_of_liver2_female_adult_53_years	chr16	75119348	75119411	75119410	+	High_confidence	25	26	49	2.014909	4.545915	chr16	75119199	75119791	LTR|ERV1|MER4-int	+	chr16	75119557	75144200	AC099508.2|ENST00000563098.1	+	75119557,75126175,75127830,75132508,75144087	75119582,75126312,75127951,75132622,75144200	0.755102
right_lobe_of_liver2_female_adult_53_years	chr16	48352334	48352515	48352334	+	RAMPAGE_only	46	50	263	10.814714	5.412772	chr16	48352363	48352642	SINE|Alu|AluSz6	+	chr16	48244387	48362737	STRG.50166.3	+	48244387,48252130,48256609,48258617,48261423,48262777,48270015,48277337,48296014,48299661,48303171,48334215,48347506,48348099,48351580,48361853	48244621,48252365,48256741,48258740,48261587,48262872,48270274,48277479,48296165,48299788,48303305,48334358,48347714,48348290,48361759,48362737	1.000000
right_lobe_of_liver2_female_adult_53_years	chr3	42770987	42771025	42771001	+	High_confidence	2	2	9	0.370085	2.750000	chr3	42771022	42771472	LINE|L1|L1MC2	+	chr3	42770611	42773635	LOC729083|NR_122070.1	+	42770611,42773204	42771077,42773635	0.555556
right_lobe_of_liver2_female_adult_53_years	chr19	6272234	6272235	6272234	-	High_confidence	10	10	11	0.452326	2.721928	chr19	6272166	6272238	DNA|TcMar-Tc2|Kanga11a	+	chr19	6210460	6271396	STRG.54495.2	-	6210460,6213336,6213725,6213938,6216404,6217953,6222120,6226976,6230569,6262227,6270578,6271023	6213170,6213408,6213797,6214038,6216513,6218041,6222684,6227102,6230713,6262310,6270759,6271396	0.818182
right_lobe_of_liver2_female_adult_53_years	chr6	89636793	89636825	89636824	-	RAMPAGE_only	2	2	6	0.246724	2.584963	chr6	89636680	89636980	SINE|Alu|AluSz	-	chr6	89634806	89638401	LYRM2|ENST00000517396.5	-	89634806,89637724,89638271	89637353,89637882,89638401	1.000000
right_lobe_of_liver2_female_adult_53_years	chr4	158172987	158173025	158173024	-	High_confidence	17	17	28	1.151376	4.458591	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.750000
right_lobe_of_liver2_female_adult_53_years	chr20	44419564	44419581	44419580	+	RAMPAGE_only	3	3	6	0.246724	2.584963	chr20	44419528	44419609	SINE|MIR|MIRc	+	chr20	44401300	44430500	HNF4A|ENST00000415691.2	+	44401300,44406057,44407380,44413693,44414506,44418424,44419720,44424017,44428334,44429522	44401487,44406232,44407475,44413800,44414662,44418512,44419876,44424254,44428457,44430500	0.833333
right_lobe_of_liver2_female_adult_53_years	chr10	45000487	45000513	45000503	+	High_confidence	5	5	15	0.616809	3.640224	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
right_lobe_of_liver2_female_adult_53_years	chr13	51382047	51382048	51382047	-	RAMPAGE_only	9	9	14	0.575688	3.467720	chr13	51381694	51382000	SINE|Alu|AluSq4	-	chr13	51365502	51384691	INTS6|ENST00000483441.5	-	51365502,51367804,51368938,51374207,51374653,51376047,51378238,51379461,51382028,51383328,51383588	51365845,51367898,51369310,51374439,51374796,51376174,51378454,51379572,51382123,51383461,51384691	1.000000
right_lobe_of_liver2_female_adult_53_years	chr16	70747238	70747255	70747254	-	RAMPAGE_only	13	14	25	1.028015	4.133661	chr16	70746928	70747495	LINE|L1|L1MB7	+	chr16	70731274	70745082	VAC14|ENST00000561879.1	-	70731274,70731494,70744422,70745025	70731359,70731627,70744579,70745082	0.680000
right_lobe_of_liver2_female_adult_53_years	chr1	95117868	95117892	95117876	+	High_confidence	3	3	14	0.575688	3.378783	chr1	95117576	95117935	LINE|L1|L1M4b	+	chr1	95117922	95244955	TMEM56-RWDD3|ENST00000604534.5	+	95117922,95143890,95148701,95150207,95151324,95173815,95230901,95244210	95118091,95144056,95148791,95150266,95151419,95173889,95230994,95244955	0.642857
right_lobe_of_liver2_female_adult_53_years	chr2	206161423	206161466	206161465	+	High_confidence	14	16	53	2.179391	5.065290	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	0.924528
right_lobe_of_liver2_female_adult_53_years	chr7	99410041	99410050	99410041	+	High_confidence	2	2	7	0.287844	2.584963	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.571429
right_lobe_of_liver2_female_adult_53_years	chr22	26525082	26525084	26525082	+	High_confidence	14	22	23	0.945773	3.425119	chr22	26524762	26525224	LTR|ERVL|MER77	+	chr22	26525261	26525849	STRG.58604.1	+	26525261	26525849	0.869565
right_lobe_of_liver2_female_adult_53_years	chr5	172854636	172854679	172854666	+	RAMPAGE_only	6	6	45	1.850426	4.942275	chr5	172854401	172854991	DNA|TcMar-Tigger|MER6A	+	chr5	172834274	172952685	ERGIC1|ENST00000393784.7	+	172834274,172888698,172897001,172909666,172914713,172924004,172926508,172932435,172935187,172950708	172834433,172888760,172897074,172909761,172914838,172924109,172926569,172932536,172935310,172952685	0.933333
right_lobe_of_liver2_female_adult_53_years	chr4	7531164	7531195	7531194	+	High_confidence	41	46	125	5.140073	5.276274	chr4	7531070	7531252	SINE|MIR|MIRc	+	chr4	7531190	7742821	STRG.14950.2	+	7531190,7531529,7638327,7654133,7661499,7664352,7667123,7676049,7682742,7689485,7697197,7703279,7704176,7712732,7714239,7715182,7718011,7723696,7725153,7726779,7728349,7729586,7733321,7734271,7737068,7740199	7531321,7531629,7638492,7654207,7661564,7664471,7667213,7676229,7682889,7689588,7697274,7703371,7704284,7712853,7714373,7715311,7718183,7723883,7725287,7726903,7728462,7729712,7733421,7734374,7737214,7742821	0.904000
right_lobe_of_liver2_female_adult_53_years	chr13	102192256	102192295	102192294	-	High_confidence	36	36	64	2.631717	5.367655	chr13	102191630	102193086	LTR|ERVL-MaLR|MLT1A-int	-	chr13	102189582	102192426	STRG.44475.2	-	102189582	102192426	0.609375
right_lobe_of_liver2_female_adult_53_years	chr7	80374423	80374442	80374423	-	High_confidence	58	70	346	14.227723	5.588435	chr7	80374347	80374986	LINE|RTE-X|L4_B_Mam	+	chr7	80371516	80374439	LOC101927269|NR_110075.1	-	80371516,80372126,80373811,80374340	80371577,80372294,80373990,80374439	0.893064
right_lobe_of_liver2_female_adult_53_years	chr1	12348943	12348969	12348943	+	RAMPAGE_only	3	3	8	0.328965	2.521641	chr1	12348985	12349026	LINE|L2|L2a	+	chr1	12311525	12510346	STRG.282.5	+	12311525,12311812,12314114,12318071,12319496,12321808,12322535,12323705,12327647,12329828,12333225,12335704,12341782,12342898,12345373,12346604,12348822,12349163,12353973,12355898,12356397,12358458,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12311625,12311925,12314327,12318337,12319630,12321964,12322746,12323780,12327854,12329918,12333366,12335827,12341885,12343051,12345509,12346652,12348973,12349374,12354221,12356090,12356524,12358601,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	0.875000
right_lobe_of_liver2_female_adult_53_years	chr13	51974038	51974051	51974048	-	High_confidence	2	3	8	0.328965	2.521641	chr13	51974046	51974100	LINE|CR1|L3	-	chr13	51964773	51973975	ATP7B|ENST00000483772.1	-	51964773,51968443,51970491,51973934	51965033,51968607,51970749,51973975	0.875000
right_lobe_of_liver2_female_adult_53_years	chr5	95852704	95852741	95852704	-	High_confidence	12	15	47	1.932668	5.240655	chr5	95852649	95852762	LTR|LTR|MamRep1527	+	chr5	95829981	95852697	STRG.19665.1	-	95829981,95852585	95830298,95852697	0.638298
right_lobe_of_liver2_female_adult_53_years	chr19	44914362	44914427	44914362	+	High_confidence	4	4	18	0.740171	3.683542	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	1.000000
right_lobe_of_liver2_female_adult_53_years	chr8	17895504	17895524	17895511	-	High_confidence	20795	25687	71386	2935.434102	7.579842	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.938419
right_lobe_of_liver2_female_adult_53_years	chr19	4152717	4152718	4152717	+	High_confidence	5	6	8	0.328965	3.000000	chr19	4152694	4152785	LINE|L2|L2b	-	chr19	4153600	4173054	CREB3L3|NM_032607.2	+	4153600,4154898,4156994,4159663,4164502,4168350,4170139,4171090,4171382,4171655	4153774,4155027,4157295,4159782,4164640,4168457,4170208,4171175,4171479,4173054	1.000000
right_lobe_of_liver2_female_adult_53_years	chr6	107872856	107872871	107872864	-	RAMPAGE_only	4	6	13	0.534568	2.918296	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.923077
right_lobe_of_liver2_female_adult_53_years	chr8	65979196	65979197	65979196	+	RAMPAGE_only	12	13	16	0.657929	3.373557	chr8	65979005	65979377	LTR|ERVL-MaLR|THE1B	+	chr8	66021555	66100520	DNAJC5B|NM_033105.4	+	66021555,66043487,66051530,66076659,66080376,66099936	66021705,66043611,66051666,66076873,66080548,66100520	0.875000
right_lobe_of_liver2_female_adult_53_years	chr20	44907391	44907410	44907409	+	RAMPAGE_only	4	7	17	0.699050	3.410417	chr20	44907296	44907477	SINE|Alu|FAM	+	chr20	44885710	44908532	YWHAB|ENST00000372839.7	+	44885710,44887647,44901530,44903992,44904967,44906000,44906381	44885886,44887742,44901833,44904116,44905131,44906096,44908532	1.000000
right_lobe_of_liver2_female_adult_53_years	chr18	659703	659714	659703	+	RAMPAGE_only	2	2	6	0.246724	2.584963	chr18	659744	659794	LINE|L2|L2a	+	chr18	657742	673484	TYMS|ENST00000323224.7	+	657742,659640,662145,670691,671379,672859	657947,659714,662320,670867,671451,673484	1.000000
right_lobe_of_liver2_female_adult_53_years	chr3	45034840	45034869	45034840	+	RAMPAGE_only	3	5	11	0.452326	3.459432	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	1.000000
right_lobe_of_liver2_female_adult_53_years	chr12	91179617	91179618	91179617	-	High_confidence	6	6	9	0.370085	2.750000	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91143276	91179618	DCN|NM_133503.3	-	91143276,91151653,91153095,91157074,91158295,91164604,91178341,91179361	91146252,91151792,91153189,91157188,91158509,91164717,91178585,91179618	0.888889
right_lobe_of_liver2_female_adult_53_years	chr14	91462074	91462211	91462210	-	High_confidence	26	29	133	5.469038	5.373125	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.969925
right_lobe_of_liver2_female_adult_53_years	chr3	186990718	186990738	186990718	+	RAMPAGE_only	18	18	55	2.261632	5.144641	chr3	186990703	186990831	SINE|Alu|AluSq2	+	chr3	186986315	187042998	ST6GAL1|ENST00000448408.5	+	186986315,186996547,187038741,187042653	186986717,186996673,187038873,187042998	0.836364
right_lobe_of_liver2_female_adult_53_years	chr7	151806689	151806699	151806698	+	High_confidence	4	5	8	0.328965	2.500000	chr7	151806685	151806943	SINE|Alu|AluSz6	+	chr7	151806615	151807642	AC093583.1|ENST00000481153.3	+	151806615,151807442	151807036,151807642	0.750000
right_lobe_of_liver2_female_adult_53_years	chr12	26914561	26914572	26914561	-	RAMPAGE_only	2	3	7	0.287844	2.584963	chr12	26914520	26914587	LINE|RTE-BovB|MamRTE1	+	chr12	26905180	26917734	INTS13|ENST00000538155.5	-	26905180,26906301,26911177,26913456,26913973,26916001,26917351,26917643	26905536,26906437,26911317,26913687,26914128,26916180,26917441,26917734	0.857143
right_lobe_of_liver2_female_adult_53_years	chr12	27725666	27725667	27725666	+	RAMPAGE_only	8	8	8	0.328965	3.000000	chr12	27725355	27725764	LINE|L1|L1M5	-	chr12	27710846	27755537	MRPS35|ENST00000542791.1	+	27710846,27755180	27710955,27755537	0.875000
right_lobe_of_liver2_female_adult_53_years	chr19	55333949	55333970	55333969	-	High_confidence	3	3	11	0.452326	2.913977	chr19	55333705	55334001	LINE|L1|L1MB5	-	chr19	55319463	55334048	TMEM150B|ENST00000592891.1	-	55319463,55320390,55320557,55320968,55322647,55333903	55320166,55320458,55320617,55321093,55322743,55334048	0.727273
right_lobe_of_liver2_female_adult_53_years	chr6	3083296	3083307	3083306	+	RAMPAGE_only	3	5	13	0.534568	3.188722	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.923077
right_lobe_of_liver2_female_adult_53_years	chr11	58927809	58927810	58927809	+	High_confidence	6	7	9	0.370085	2.947703	chr11	58927656	58928383	LTR|ERVK|HERVK22-int	-	chr11	58927700	58956405	GLYATL1|ENST00000317391.8	+	58927700,58942539,58943542,58947045,58947857,58954769,58955175,58955609	58927829,58942584,58943666,58947165,58947965,58954896,58955353,58956405	1.000000
right_lobe_of_liver2_female_adult_53_years	chr4	1241428	1241445	1241444	-	RAMPAGE_only	4	5	12	0.493447	2.845351	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1248740	CTBP1|ENST00000513420.1	-	1225437,1228198,1238182,1241324,1248660	1225566,1228343,1238337,1241519,1248740	0.916667
right_lobe_of_liver2_female_adult_53_years	chr2	113185065	113185066	113185065	+	High_confidence	4	4	7	0.287844	2.584963	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.857143
right_lobe_of_liver2_female_adult_53_years	chr12	9104471	9104501	9104471	-	RAMPAGE_only	3	3	12	0.493447	3.418296	chr12	9104458	9104683	LINE|L2|L2a	-	chr12	9067707	9115962	A2M|NM_000014.4	-	9067707,9068182,9068739,9069744,9070487,9072358,9072652,9074559,9076755,9077345,9077700,9079243,9079638,9080093,9089199,9089901,9090355,9091200,9093464,9094972,9095538,9098606,9099380,9101143,9101446,9104238,9106235,9106490,9107523,9109320,9109866,9110313,9112158,9112376,9113359,9115763	9067839,9068224,9068842,9069813,9070578,9072486,9072871,9074783,9076936,9077420,9077857,9079331,9079815,9080177,9089251,9090023,9090482,9091429,9093579,9095084,9095700,9098756,9099523,9101207,9101674,9104400,9106345,9106605,9107644,9109405,9110035,9110334,9112211,9112536,9113543,9115962	0.500000
right_lobe_of_liver2_female_adult_53_years	chr1	51297912	51297946	51297912	-	High_confidence	3	3	11	0.452326	3.121928	chr1	51297625	51298239	LINE|L2|L2a	+	chr1	51287985	51297960	TTC39A|ENST00000534098.1	-	51287985,51288838,51290004,51290513,51294390,51297790	51288280,51288955,51290119,51290625,51294511,51297960	0.818182
right_lobe_of_liver2_female_adult_53_years	chr5	133089588	133089693	133089677	+	RAMPAGE_only	59	90	220	9.046529	6.438848	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	144459443	144459453	144459443	-	High_confidence	2	2	6	0.246724	2.584963	chr1	144459208	144459506	SINE|Alu|AluJb	+	chr1	144421385	144459464	NBPF15|NM_001170755.2	-	144421385,144423869,144424689,144425516,144426277,144427046,144427817,144428605,144429699,144433772,144435110,144435780,144436894,144437944,144439828,144440140,144440401,144442669,144448774,144450771,144456536,144459365	144423256,144423975,144424862,144425568,144426450,144427098,144427990,144428657,144429863,144433824,144435316,144435853,144437109,144438047,144440038,144440295,144440581,144442920,144448916,144450802,144456805,144459464	0.666667
right_lobe_of_liver2_female_adult_53_years	chr3	128626772	128626822	128626810	-	RAMPAGE_only	16	16	58	2.384994	5.133341	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.982759
right_lobe_of_liver2_female_adult_53_years	chr6	127330899	127330966	127330899	-	High_confidence	6	8	37	1.521462	4.422001	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.891892
right_lobe_of_liver2_female_adult_53_years	chr8	144853500	144853556	144853555	-	High_confidence	10	10	45	1.850426	4.961148	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	0.955556
right_lobe_of_liver2_female_adult_53_years	chr3	171358463	171358464	171358463	-	RAMPAGE_only	7	7	8	0.328965	2.807355	chr3	171358222	171358573	LTR|ERVL-MaLR|THE1B	-	chr3	171346933	171460405	TNIK|ENST00000465393.1	-	171346933,171369619,171460006	171347218,171369685,171460405	0.500000
right_lobe_of_liver2_female_adult_53_years	chr3	33838228	33838291	33838232	+	RAMPAGE_only	15	15	80	3.289647	5.290634	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.862500
right_lobe_of_liver2_female_adult_53_years	chr3	194486612	194486631	194486630	-	High_confidence	4	5	18	0.740171	3.690117	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.944444
right_lobe_of_liver2_female_adult_53_years	chr6	135830504	135830527	135830507	-	High_confidence	13	13	38	1.562582	4.493133	chr6	135830498	135830574	LINE|L2|L2a	+	chr6	135829783	135830534	STRG.24447.1	-	135829783	135830534	0.763158
right_lobe_of_liver2_female_adult_53_years	chr18	26753766	26753808	26753783	-	High_confidence	15	16	48	1.973788	4.364541	chr18	26753589	26753863	LTR|ERVL|MLT2D	-	chr18	26747820	26754163	STRG.53608.2	-	26747820,26753638	26748159,26754163	0.854167
right_lobe_of_liver2_female_adult_53_years	chr15	57451497	57451563	57451562	+	RAMPAGE_only	13	13	72	2.960682	4.662932	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57437507	57550727	STRG.48154.6	+	57437507,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547351	57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
right_lobe_of_liver2_female_adult_53_years	chr12	9114076	9114085	9114076	-	RAMPAGE_only	7	7	20	0.822412	3.576618	chr12	9113988	9114066	SINE|MIR|MIRc	-	chr12	9067707	9115962	A2M|NM_000014.4	-	9067707,9068182,9068739,9069744,9070487,9072358,9072652,9074559,9076755,9077345,9077700,9079243,9079638,9080093,9089199,9089901,9090355,9091200,9093464,9094972,9095538,9098606,9099380,9101143,9101446,9104238,9106235,9106490,9107523,9109320,9109866,9110313,9112158,9112376,9113359,9115763	9067839,9068224,9068842,9069813,9070578,9072486,9072871,9074783,9076936,9077420,9077857,9079331,9079815,9080177,9089251,9090023,9090482,9091429,9093579,9095084,9095700,9098756,9099523,9101207,9101674,9104400,9106345,9106605,9107644,9109405,9110035,9110334,9112211,9112536,9113543,9115962	0.900000
right_lobe_of_liver2_female_adult_53_years	chr8	86369025	86369030	86369029	+	RAMPAGE_only	6	7	17	0.699050	3.852169	chr8	86368776	86369052	LINE|L2|L2c	+	chr8	86374040	86467476	WWP1|ENST00000265428.4	+	86374040,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	1.000000
right_lobe_of_liver2_female_adult_53_years	chr6	3083202	3083252	3083251	+	RAMPAGE_only	6	7	29	1.192497	3.958229	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.896552
right_lobe_of_liver2_female_adult_53_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	17	17	17	0.699050	3.807764	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
right_lobe_of_liver2_female_adult_53_years	chr19	33395158	33395191	33395177	-	High_confidence	33	38	146	6.003605	6.275522	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	0.972603
right_lobe_of_liver2_female_adult_53_years	chr1	54199996	54200023	54199996	-	High_confidence	35	38	103	4.235420	5.553564	chr1	54199790	54199971	SINE|MIR|MIRb	-	chr1	54172335	54200010	CYB5RL|ENST00000421415.5	-	54172335,54179148,54184160,54187651,54195418,54196368,54199975	54174822,54179352,54184265,54187739,54195715,54196491,54200010	0.873786
right_lobe_of_liver2_female_adult_53_years	chr4	73144752	73144771	73144752	-	RAMPAGE_only	32	34	50	2.056029	3.719720	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.940000
right_lobe_of_liver2_female_adult_53_years	chr1	184568375	184568409	184568408	+	High_confidence	15	16	41	1.685944	3.912273	chr1	184568204	184568449	LINE|L1|L1MB3	-	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.926829
right_lobe_of_liver2_female_adult_53_years	chr8	80485592	80485619	80485618	+	High_confidence	9	10	26	1.069135	4.418296	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.846154
right_lobe_of_liver2_female_adult_53_years	chr2	10120434	10120435	10120434	+	High_confidence	6	6	8	0.328965	2.521641	chr2	10120422	10120535	SINE|Alu|FLAM_C	+	chr2	10120697	10131418	RRM2|ENST00000641198.1	+	10120697,10122754,10122982,10123386,10123735,10124716,10126874,10127086,10128847,10129040,10129233	10120882,10122897,10123057,10123530,10123852,10124850,10126969,10127220,10128952,10129154,10131418	0.750000
right_lobe_of_liver2_female_adult_53_years	chr6	26957038	26957048	26957047	+	High_confidence	4	4	9	0.370085	2.947703	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26956992	27023924	LINC00240|ENST00000606878.1	+	26956992,26968457,27023253	26957183,26968522,27023924	0.555556
right_lobe_of_liver2_female_adult_53_years	chr6	118651538	118651564	118651563	-	High_confidence	3	3	6	0.246724	2.584963	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	1.000000
right_lobe_of_liver2_female_adult_53_years	chr11	58927664	58927738	58927709	+	High_confidence	17	17	108	4.441023	5.700225	chr11	58927656	58928383	LTR|ERVK|HERVK22-int	-	chr11	58927700	58956405	GLYATL1|ENST00000317391.8	+	58927700,58942539,58943542,58947045,58947857,58954769,58955175,58955609	58927829,58942584,58943666,58947165,58947965,58954896,58955353,58956405	0.953704
right_lobe_of_liver2_female_adult_53_years	chr4	38950763	38950764	38950763	-	High_confidence	86	95	120	4.934470	5.585717	chr4	38950648	38950949	LINE|L2|L2a	+	chr4	38950117	38950750	STRG.15579.1	-	38950117	38950750	0.966667
right_lobe_of_liver2_female_adult_53_years	chr3	188708151	188708164	188708163	+	RAMPAGE_only	4	4	9	0.370085	3.000000	chr3	188708061	188708180	SINE|MIR|MIR3	-	chr3	188758738	188866309	LPP|ENST00000459897.1	+	188758738,188759262,188760112,188866199	188758768,188759500,188760282,188866309	0.666667
right_lobe_of_liver2_female_adult_53_years	chr16	72014395	72014451	72014418	+	High_confidence	412	412	1395	57.363216	7.561102	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.670251
right_lobe_of_liver2_female_adult_53_years	chr11	18239710	18239877	18239724	-	RAMPAGE_only	85	86	216	8.882046	6.191619	chr11	18239491	18239831	LINE|L2|L2	+	chr11	18239222	18248643	SAA2|ENST00000414546.6	-	18239222,18245909,18247920,18248602	18239969,18246048,18248015,18248643	0.921296
right_lobe_of_liver2_female_adult_53_years	chr1	52914056	52914057	52914056	-	RAMPAGE_only	16	16	23	0.945773	4.011365	chr1	52913984	52914299	LINE|L2|L2b	-	chr1	52913419	52921785	ECHDC2|ENST00000542552.1	-	52913419,52917543,52921552	52914095,52917615,52921785	0.782609
right_lobe_of_liver2_female_adult_53_years	chr1	26944406	26944412	26944406	+	High_confidence	14	16	32	1.315859	4.000000	chr1	26944211	26944496	SINE|Alu|AluJb	-	chr1	26945134	26946184	NUDC|ENST00000484772.1	+	26945134,26946129	26945686,26946184	0.500000
right_lobe_of_liver2_female_adult_53_years	chr2	55267598	55267623	55267598	-	High_confidence	5	6	25	1.028015	4.316828	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.920000
right_lobe_of_liver2_female_adult_53_years	chr15	93863007	93863040	93863039	+	High_confidence	6	6	12	0.493447	3.251629	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.500000
right_lobe_of_liver2_female_adult_53_years	chr6	131844453	131844473	131844472	+	High_confidence	104	107	444	18.257540	6.805441	chr6	131844197	131845043	DNA|TcMar-Tigger|Tigger6a	+	chr6	131844474	131893884	STRG.24396.4	+	131844474,131847775,131849989,131851141,131852174,131854925,131858667,131860386,131861594,131864505,131864865,131868017,131869357,131872069,131872922,131874267,131875775,131876991,131878541,131879879,131882344,131883693,131884930,131886561,131890340	131844980,131847848,131850106,131851267,131852235,131855023,131858747,131860506,131861704,131864571,131864938,131868126,131869489,131872101,131873050,131874337,131875863,131877161,131878593,131880034,131882474,131883774,131885063,131886724,131893884	0.970721
right_lobe_of_liver2_female_adult_53_years	chr16	72021308	72021309	72021308	+	RAMPAGE_only	14	14	19	0.781291	3.281036	chr16	72021335	72021595	LINE|L2|L2b	+	chr16	72015622	72024512	DHODH|ENST00000571392.1	+	72015622,72023164,72023479,72024144	72017106,72023323,72023633,72024512	0.947368
right_lobe_of_liver2_female_adult_53_years	chr14	77076158	77076194	77076158	-	High_confidence	7	9	39	1.603703	4.912273	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77074275	77076177	STRG.46239.1	-	77074275,77076104	77074598,77076177	0.794872
right_lobe_of_liver2_female_adult_53_years	chr10	94682980	94682986	94682985	+	High_confidence	362	367	594	24.425628	6.811567	chr10	94682598	94683114	LTR|ERV1|MER61D	-	chr10	94683493	94736190	CYP2C18|NM_000772.2	+	94683493,94687769,94688124,94694916,94706783,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94706960,94720537,94724533,94733438,94736190	0.589226
right_lobe_of_liver2_female_adult_53_years	chr4	3441704	3441733	3441704	+	High_confidence	6	6	12	0.493447	2.913977	chr4	3441662	3441756	LINE|L2|L2b	-	chr4	3441886	3449495	HGFAC|ENST00000382774.7	+	3441886,3442731,3443049,3443340,3444038,3444310,3444622,3444818,3445264,3446041,3447491,3447894,3448127,3449236	3442118,3442912,3443146,3443420,3444161,3444442,3444733,3444993,3445350,3446294,3447631,3448035,3448276,3449495	0.916667
right_lobe_of_liver2_female_adult_53_years	chr4	184382248	184382404	184382308	-	High_confidence	70	78	261	10.732473	5.960909	chr4	184382179	184382738	LTR|ERVL|LTR67B	+	chr4	184365560	184382306	LOC102723766|NR_125934.1	-	184365560,184365825,184371668,184372338,184376440,184382133	184365646,184365947,184371807,184372480,184376544,184382306	0.559387
right_lobe_of_liver2_female_adult_53_years	chr4	76454271	76454312	76454301	+	RAMPAGE_only	92	104	297	12.212814	7.389173	chr4	76454050	76454343	SINE|Alu|AluSq	-	chr4	76435099	76783253	SHROOM3|ENST00000296043.6	+	76435099,76555608,76710155,76730803,76738760,76749016,76754310,76756448,76759544,76770625,76778808	76436220,76555763,76710287,76730935,76741926,76749090,76755192,76756937,76759695,76770898,76783253	0.663300
right_lobe_of_liver2_female_adult_53_years	chr1	166850234	166850275	166850234	+	RAMPAGE_only	2	2	13	0.534568	3.251629	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.923077
right_lobe_of_liver2_female_adult_53_years	chr1	160263333	160263373	160263333	-	High_confidence	78	80	420	17.270646	6.110794	chr1	160263175	160263341	LINE|L2|L2a	+	chr1	160240101	160263382	STRG.3630.15	-	160240101,160243959,160263264	160240370,160244034,160263382	0.930952
right_lobe_of_liver2_female_adult_53_years	chr3	44439874	44439906	44439905	-	RAMPAGE_only	5	6	20	0.822412	3.747413	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431719	44477670	ZNF445|ENST00000396077.7	-	44431719,44449512,44450446,44450867,44451313,44455120,44458243,44477590	44448739,44449623,44450573,44450962,44451482,44455696,44458364,44477670	0.600000
right_lobe_of_liver2_female_adult_53_years	chr1	209724390	209724394	209724390	-	RAMPAGE_only	6	6	12	0.493447	3.584963	chr1	209724223	209724347	LTR|ERV1|LTR78	-	chr1	209723909	209742602	STRG.4906.1	-	209723909,209742496	209724144,209742602	0.750000
right_lobe_of_liver2_female_adult_53_years	chr8	124619511	124619514	124619511	-	High_confidence	14	16	24	0.986894	3.077324	chr8	124619245	124619557	LINE|L2|L2c	+	chr8	124589664	124619479	MTSS1|ENST00000519671.1	-	124589664,124591150,124619266	124589711,124591235,124619479	0.708333
right_lobe_of_liver2_female_adult_53_years	chr11	95794495	95794516	95794495	+	High_confidence	10	10	33	1.356979	4.577820	chr11	95794328	95794625	LINE|L1|L1M5	-	chr11	95794164	95818903	STRG.39588.10	+	95794164,95799231,95812931,95813467,95817786,95818826	95794533,95799388,95813111,95813589,95817903,95818903	0.818182
right_lobe_of_liver2_female_adult_53_years	chr19	58306188	58306214	58306188	+	High_confidence	3	3	9	0.370085	3.169925	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305373	58315202	ERVK3-1|ENST00000427361.5	+	58305373,58306087,58312196,58314747	58305445,58306216,58312462,58315202	0.888889
right_lobe_of_liver2_female_adult_53_years	chr19	49917961	49917965	49917961	-	High_confidence	2	2	7	0.287844	2.584963	chr19	49917748	49918033	SINE|Alu|AluSx	+	chr19	49909405	49917661	NUP62|ENST00000595761.1	-	49909405,49917607	49909884,49917661	0.571429
right_lobe_of_liver2_female_adult_53_years	chr11	102641217	102641227	102641217	+	RAMPAGE_only	6	7	10	0.411206	2.521928	chr11	102641151	102641363	LINE|L2|L2	-	chr11	102677487	102685850	STRG.39624.2	+	102677487,102681239,102681821,102683324	102677784,102681374,102681888,102685850	0.900000
right_lobe_of_liver2_female_adult_53_years	chr12	124355447	124355448	124355447	-	RAMPAGE_only	6	6	7	0.287844	2.584963	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124324415	124422554	NCOR2|ENST00000356219.7	-	124324415,124326190,124327408,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124398118,124400500,124402403,124419956,124422500	124325583,124326370,124327633,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362297,124363799,124372610,124374463,124378384,124385887,124398181,124400673,124402561,124420055,124422554	0.857143
right_lobe_of_liver2_female_adult_53_years	chr21	29077476	29077493	29077486	+	High_confidence	2	2	9	0.370085	2.500000	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.555556
right_lobe_of_liver2_female_adult_53_years	chr1	31471567	31471568	31471567	-	High_confidence	9	11	12	0.493447	3.277613	chr1	31471367	31471933	LTR|ERV1|LTR10A	-	chr1	31453810	31471601	STRG.653.1	-	31453810,31461321,31471065	31460503,31461407,31471601	0.916667
right_lobe_of_liver2_female_adult_53_years	chr5	81407938	81407939	81407938	-	RAMPAGE_only	19	19	22	0.904653	3.975418	chr5	81407775	81408135	LTR|ERVL-MaLR|THE1D	-	chr5	81359851	81394179	ACOT12|ENST00000513751.1	-	81359851,81363787,81371749,81385756,81393987	81360038,81363889,81371810,81385826,81394179	0.545455
right_lobe_of_liver2_female_adult_53_years	chr15	57402037	57402038	57402037	+	RAMPAGE_only	11	11	11	0.452326	3.095795	chr15	57402062	57402472	LTR|ERVL-MaLR|MSTB	+	chr15	57398476	57550727	STRG.48154.4	+	57398476,57406972,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547351	57402714,57407102,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
right_lobe_of_liver2_female_adult_53_years	chr2	37147695	37147697	37147695	-	High_confidence	4	6	8	0.328965	2.750000	chr2	37147318	37147662	LINE|L1|L1PA4	-	chr2	37107272	37147806	EIF2AK2|ENST00000405334.5	-	37107272,37107473,37109193,37114730,37119958,37122505,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687	37107395,37107527,37109295,37114859,37120139,37122664,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147806	0.875000
right_lobe_of_liver2_female_adult_53_years	chr14	104766873	104766890	104766873	-	High_confidence	2	2	8	0.328965	2.500000	chr14	104766824	104767423	LTR|ERV1|LTR71B	-	chr14	104747315	104766963	STRG.46809.2	-	104747315,104756405,104766842	104748773,104757420,104766963	0.750000
right_lobe_of_liver2_female_adult_53_years	chr15	85719300	85719323	85719322	+	RAMPAGE_only	8	8	19	0.781291	3.787144	chr15	85719357	85719584	SINE|MIR|MIRb	+	chr15	85717151	85727247	AKAP13|ENST00000558644.2	+	85717151,85718012,85719075,85721990,85722229,85723071,85726409,85727065	85717402,85718159,85719326,85722116,85722347,85723320,85726486,85727247	1.000000
right_lobe_of_liver2_female_adult_53_years	chr5	80211339	80211392	80211346	-	RAMPAGE_only	5	5	32	1.315859	4.176109	chr5	80211207	80211707	LTR|ERV1|LTR64	+	chr5	80177314	80255198	SERINC5|ENST00000513907.1	-	80177314,80177885,80202885,80255081	80177397,80178064,80203053,80255198	0.906250
right_lobe_of_liver2_female_adult_53_years	chr17	50193950	50193971	50193950	-	High_confidence	2	2	8	0.328965	2.807355	chr17	50193783	50193912	SINE|MIR|MIR3	-	chr17	50190908	50194058	COL1A1|ENST00000476387.1	-	50190908,50191382,50191787,50191979,50192474,50192639,50192796,50192993,50193942	50190924,50191490,50191886,50192024,50192528,50192693,50192850,50193047,50194058	0.750000
right_lobe_of_liver2_female_adult_53_years	chr16	53445780	53445781	53445780	+	High_confidence	8	8	11	0.452326	3.121928	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.909091
right_lobe_of_liver2_female_adult_53_years	chr1	20028407	20028426	20028407	+	High_confidence	19	23	33	1.356979	4.862576	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028429	20091158	PLA2G5|ENST00000465698.5	+	20028429,20059631,20068872,20084820,20086082,20088824,20089788,20090567	20028709,20059692,20069032,20084870,20086227,20088943,20089895,20091158	0.727273
right_lobe_of_liver2_female_adult_53_years	chr1	28983857	28983896	28983871	+	RAMPAGE_only	10	10	49	2.014909	5.070442	chr1	28983513	28984367	LTR|ERV1|LTR1D	-	chr1	28987497	29072224	EPB41|ENST00000645111.1	+	28987497,28993329,29011864,29015691,29018223,29030399,29033092,29035825,29039253,29053103,29058588,29058810,29060421,29064981,29068732,29070363	28987905,28993542,29011907,29015767,29018442,29030487,29033245,29035923,29039426,29053312,29058645,29058852,29060484,29065158,29068768,29072224	0.897959
right_lobe_of_liver2_female_adult_53_years	chr17	1744398	1744442	1744398	+	RAMPAGE_only	2	3	12	0.493447	2.617492	chr17	1744211	1744513	SINE|Alu|AluSp	+	chr17	1743025	1755268	SERPINF2|ENST00000382061.4	+	1743025,1744991,1745174,1745332,1745707,1747018,1747308,1748597,1752585,1754121	1743076,1745058,1745213,1745395,1745909,1747162,1747512,1748740,1752790,1755268	1.000000
right_lobe_of_liver2_female_adult_53_years	chr11	119110889	119110891	119110889	+	High_confidence	8	12	13	0.534568	3.084963	chr11	119110843	119110902	LINE|CR1|L3b	+	chr11	119111056	119117121	C2CD2L|ENST00000528586.2	+	119111056,119111262,119111520,119112327,119112481,119112699,119113610,119113854,119114079,119116024	119111168,119111374,119111629,119112392,119112609,119112874,119113712,119113988,119114365,119117121	0.923077
right_lobe_of_liver2_female_adult_53_years	chr7	150769818	150769852	150769823	-	High_confidence	4	7	18	0.740171	3.794653	chr7	150769734	150770037	SINE|Alu|AluJr	+	chr7	150764763	150768853	STRG.28709.1	-	150764763,150766311	150765970,150768853	0.500000
right_lobe_of_liver2_female_adult_53_years	chr17	28352992	28353009	28352992	-	RAMPAGE_only	3	3	9	0.370085	3.169925	chr17	28352965	28353049	LINE|CR1|L3	+	chr17	28347660	28357463	POLDIP2|ENST00000618887.2	-	28347660,28349082,28350437,28350765,28351663,28352911,28353240,28353694,28354487,28355794,28357287	28348231,28349162,28350563,28350792,28351800,28353019,28353316,28353791,28354531,28355876,28357463	1.000000
right_lobe_of_liver2_female_adult_53_years	chr17	79732962	79732992	79732962	-	High_confidence	10	12	42	1.727065	4.784143	chr17	79732954	79733048	LINE|L1|L1ME4b	+	chr17	79732212	79733030	STRG.53074.1	-	79732212	79733030	0.833333
right_lobe_of_liver2_female_adult_53_years	chr4	68948114	68948170	68948114	-	High_confidence	33	34	92	3.783094	5.645865	chr4	68946743	68948416	DNA|TcMar-Tigger|Tigger1	-	chr4	68929449	68948424	STRG.15922.3	-	68929449,68930545,68931154,68932627,68945305,68948009	68930092,68930765,68931242,68932759,68945454,68948424	0.891304
right_lobe_of_liver2_female_adult_53_years	chr10	44990430	44990431	44990430	+	High_confidence	22	22	22	0.904653	4.243300	chr10	44990231	44990788	LTR|ERV1|MER34A1	-	chr10	44990537	44991970	RASSF4|ENST00000493490.1	+	44990537,44990947,44991904	44990828,44991069,44991970	0.772727
right_lobe_of_liver2_female_adult_53_years	chr7	6590246	6590279	6590246	+	High_confidence	3	3	18	0.740171	3.413834	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	1.000000
right_lobe_of_liver2_female_adult_53_years	chr2	210540250	210540291	210540290	+	RAMPAGE_only	3	3	18	0.740171	3.725481	chr2	210540076	210540367	LTR|Gypsy|LTR81B	-	chr2	210556537	210679107	CPS1|ENST00000233072.9	+	210556537,210573297,210576345,210577420,210579713,210582616,210588057,210590105,210590799,210591830,210592878,210594507,210595486,210599371,210600554,210602201,210605101,210606730,210608360,210612116,210616422,210637701,210639149,210639995,210642483,210647862,210648472,210650362,210654024,210656524,210658598,210660484,210663122,210668185,210674901,210675727,210677006,210677886	210556859,210573407,210576490,210577510,210579770,210582709,210588147,210590234,210590906,210591969,210592956,210594606,210595582,210599561,210600712,210602330,210605246,210606941,210608559,210612293,210616541,210637843,210639215,210640059,210642665,210648057,210648540,210650438,210654102,210656632,210658688,210660655,210663197,210668284,210674961,210675840,210677136,210679107	0.777778
right_lobe_of_liver2_female_adult_53_years	chr2	55268586	55268596	55268595	-	High_confidence	4	5	12	0.493447	3.277613	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	0.916667
right_lobe_of_liver2_female_adult_53_years	chr3	194340469	194340836	194340469	-	RAMPAGE_only	22	22	392	16.119269	6.442134	chr3	194339739	194340505	LTR|ERV1|MER4E	-	chr3	194339764	194351318	STRG.14634.1	-	194339764,194349568,194351241	194342705,194349638,194351318	1.000000
right_lobe_of_liver2_female_adult_53_years	chr2	210540626	210540643	210540626	+	RAMPAGE_only	4	4	8	0.328965	2.750000	chr2	210540595	210540724	SINE|MIR|MIRb	-	chr2	210556537	210679107	CPS1|ENST00000233072.9	+	210556537,210573297,210576345,210577420,210579713,210582616,210588057,210590105,210590799,210591830,210592878,210594507,210595486,210599371,210600554,210602201,210605101,210606730,210608360,210612116,210616422,210637701,210639149,210639995,210642483,210647862,210648472,210650362,210654024,210656524,210658598,210660484,210663122,210668185,210674901,210675727,210677006,210677886	210556859,210573407,210576490,210577510,210579770,210582709,210588147,210590234,210590906,210591969,210592956,210594606,210595582,210599561,210600712,210602330,210605246,210606941,210608559,210612293,210616541,210637843,210639215,210640059,210642665,210648057,210648540,210650438,210654102,210656632,210658688,210660655,210663197,210668284,210674961,210675840,210677136,210679107	0.500000
right_lobe_of_liver2_female_adult_53_years	chr12	27579302	27579369	27579302	+	RAMPAGE_only	7	7	30	1.233618	4.573557	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.666667
right_lobe_of_liver2_female_adult_53_years	chr3	149392103	149392146	149392105	-	RAMPAGE_only	6	9	16	0.657929	3.640224	chr3	149391643	149392476	LINE|L1|L1MC5	-	chr3	149387370	149401339	STRG.13811.1	-	149387370,149390329,149401264	149387826,149390422,149401339	0.687500
right_lobe_of_liver2_female_adult_53_years	chr8	22287747	22287748	22287747	+	RAMPAGE_only	9	10	11	0.452326	3.121928	chr8	22287710	22287808	SINE|Alu|FLAM_C	-	chr8	22279361	22355530	PIWIL2|ENST00000611073.1	+	22279361,22281119,22281376,22283033,22284161,22287527,22288541,22289846,22290232,22304020,22304783,22305926,22307932,22309960,22311111,22314327,22315028,22316244,22318169,22352958,22355348	22279584,22281207,22281515,22283240,22284272,22287645,22288666,22289927,22290346,22304209,22304868,22306016,22308073,22310074,22311300,22314429,22315145,22316333,22318275,22353212,22355530	0.727273
right_lobe_of_liver2_female_adult_53_years	chr14	64415672	64415727	64415683	+	RAMPAGE_only	10	11	42	1.727065	5.046457	chr14	64415628	64415688	DNA|hAT-Charlie|Charlie24	+	chr14	64419202	64426192	MTHFD1|ENST00000554057.5	+	64419202,64419813,64424803,64425729,64426018	64419250,64419925,64424931,64425827,64426192	0.833333
right_lobe_of_liver2_female_adult_53_years	chr22	35311038	35311077	35311076	+	High_confidence	8	8	26	1.069135	3.863465	chr22	35310706	35311148	LINE|L2|L2c	-	chr22	35311061	35323819	TOM1|ENST00000443206.2	+	35311061,35317876,35321958,35323027,35323495,35323767	35311127,35317961,35322037,35323177,35323630,35323819	0.923077
right_lobe_of_liver2_female_adult_53_years	chrX	147937503	147937584	147937574	+	RAMPAGE_only	3	3	20	0.822412	3.932138	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.61265.9	+	147940580,147943130,147944868,147945533,147948733	147940662,147943326,147945051,147945616,147950315	0.950000
right_lobe_of_liver2_female_adult_53_years	chr1	20154494	20154495	20154494	+	High_confidence	10	10	12	0.493447	3.418296	chr1	20154321	20156816	LTR|ERV1|HERVE-int	+	chr1	20154337	20160568	Z98257.1|ENST00000417884.1	+	20154337,20159611	20154463,20160568	0.916667
right_lobe_of_liver2_female_adult_53_years	chr5	38881705	38881727	38881705	+	RAMPAGE_only	3	3	8	0.328965	2.807355	chr5	38881676	38881753	SINE|tRNA-Deu|AmnSINE2	+	chr5	38845998	38935641	OSMR|ENST00000274276.7	+	38845998,38869031,38876200,38881592,38883826,38885348,38886038,38903881,38904352,38917545,38918839,38921614,38923149,38924421,38925203,38931882,38932462,38932871	38846387,38869117,38876373,38881764,38884111,38885484,38886190,38904024,38904503,38917622,38919062,38921794,38923254,38924595,38925371,38931964,38932535,38935641	0.750000
right_lobe_of_liver2_female_adult_53_years	chr18	26753940	26753973	26753972	-	High_confidence	8	8	19	0.781291	4.037401	chr18	26753863	26754158	SINE|Alu|AluSz	-	chr18	26747820	26754163	STRG.53608.2	-	26747820,26753638	26748159,26754163	0.842105
right_lobe_of_liver2_female_adult_53_years	chr12	58781708	58781719	58781718	-	High_confidence	65	75	152	6.250329	6.207299	chr12	58781360	58781953	LTR|ERVL|MER70B	-	chr12	58781178	58781706	STRG.42054.1	-	58781178	58781706	0.539474
right_lobe_of_liver2_female_adult_53_years	chr3	52615378	52615385	52615378	-	High_confidence	2	2	7	0.287844	2.807355	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	1.000000
right_lobe_of_liver2_female_adult_53_years	chr10	102449836	102449845	102449844	+	High_confidence	3	3	6	0.246724	2.584963	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449852	102456293	RPARP-AS1|ENST00000492465.2	+	102449852,102450186,102451398,102452089,102455336	102450022,102450360,102451555,102452187,102456293	1.000000
right_lobe_of_liver2_female_adult_53_years	chr22	37110520	37110536	37110535	-	High_confidence	4	4	10	0.411206	3.121928	chr22	37110468	37110704	DNA|hAT-Charlie|MER33	+	chr22	37065435	37110520	STRG.58787.5	-	37065435,37066825,37069072,37070483,37070915,37073531,37074609,37075134,37084294,37084726,37086282,37089577,37095550,37095905,37096647,37098415,37103215,37110454	37066238,37066962,37069344,37070652,37071032,37073645,37074708,37075280,37084404,37084839,37086419,37089782,37095592,37096090,37096715,37098549,37103418,37110520	1.000000
right_lobe_of_liver2_female_adult_53_years	chr15	89112669	89112683	89112682	+	RAMPAGE_only	10	11	40	1.644823	4.753226	chr15	89112629	89112704	SINE|MIR|MIRc	+	chr15	89088429	89195751	ABHD2|ENST00000565973.5	+	89088429,89090282,89102396,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89195751	0.500000
right_lobe_of_liver2_female_adult_53_years	chr2	218313469	218313505	218313504	-	RAMPAGE_only	12	12	36	1.480341	4.426734	chr2	218313410	218313517	LINE|L1|L1MC4a	-	chr2	218279334	218292586	TMBIM1|ENST00000440422.5	-	218279334,218280025,218281939,218285762,218292465	218279353,218280126,218282181,218285938,218292586	0.722222
right_lobe_of_liver2_female_adult_53_years	chr2	71388581	71388582	71388581	+	RAMPAGE_only	8	8	8	0.328965	2.750000	chr2	71388098	71388644	LTR|ERVK|LTR22E	+	chr2	71276592	71395670	ZNF638|ENST00000410075.5	+	71276592,71348752,71355718,71363152,71363953,71365428,71368381,71369882,71380221,71380512,71388622,71393393,71395246	71276754,71350271,71355780,71363191,71364252,71365706,71368528,71370005,71380280,71380565,71388723,71393645,71395670	0.500000
right_lobe_of_liver2_female_adult_53_years	chr19	15661922	15662001	15662000	+	RAMPAGE_only	9	9	28	1.151376	3.753434	chr19	15661990	15662301	SINE|Alu|AluSg	+	chr19	15640899	15662825	CYP4F3|ENST00000221307.12	+	15640899,15641414,15645718,15647051,15647196,15649159,15649912,15652568,15652822,15658263,15658490,15658726,15659219	15640945,15641613,15645863,15647105,15647324,15649281,15650183,15652635,15652952,15658397,15658555,15658809,15662825	0.964286
right_lobe_of_liver2_female_adult_53_years	chr10	80272025	80273259	80273258	-	RAMPAGE_only	230	274	2935	120.688918	7.445066	chr10	80273037	80273280	SINE|MIR|MIR	+	chr10	80271819	80275479	MAT1A|ENST00000485270.5	-	80271819,80274519,80275016	80273883,80274653,80275479	0.995911
right_lobe_of_liver2_female_adult_53_years	chr1	113759857	113759896	113759884	-	High_confidence	4	4	15	0.616809	3.240224	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.800000
right_lobe_of_liver2_female_adult_53_years	chr2	174410277	174410351	174410277	+	High_confidence	5	5	39	1.603703	4.592593	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.743590
right_lobe_of_liver2_female_adult_53_years	chr14	73965421	73965598	73965597	-	RAMPAGE_only	6	6	67	2.755079	4.454130	chr14	73965446	73965728	SINE|Alu|AluSx1	+	chr14	73963229	73996308	STRG.46165.3	-	73963229,73970009,73971851,73972883,73973876,73974923,73975935,73976323,73977023,73977298,73983017,73986813,73987885,73996107	73967014,73970125,73971908,73973024,73973978,73974985,73976015,73976412,73977059,73977374,73983161,73986893,73988172,73996308	0.955224
right_lobe_of_liver2_female_adult_53_years	chr18	80148048	80148049	80148048	+	High_confidence	66	66	77	3.166285	5.325885	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.779221
right_lobe_of_liver2_female_adult_53_years	chr3	39154613	39154651	39154613	-	High_confidence	8	8	25	1.028015	3.938722	chr3	39154504	39154649	LINE|L2|L2c	+	chr3	39141850	39154602	CSRNP1|NM_001320560.1	-	39141850,39144136,39144996,39146477,39154496	39144044,39144451,39145256,39146722,39154602	0.880000
right_lobe_of_liver2_female_adult_53_years	chr16	87381442	87381470	87381442	-	RAMPAGE_only	2	2	9	0.370085	2.750000	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87326986	87383757	FBXO31|ENST00000311635.11	-	87326986,87333885,87335303,87336154,87342876,87343597,87347173,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87360366,87383757	0.555556
right_lobe_of_liver2_female_adult_53_years	chr10	27509883	27509899	27509898	+	RAMPAGE_only	5	6	11	0.452326	3.095795	chr10	27509948	27510212	LINE|L2|L2c	+	chr10	27504618	27537966	RAB18|ENST00000423465.1	+	27504618,27504978,27509874,27526827,27531528,27532506,27533734,27533927,27537875	27504724,27505190,27509930,27526889,27531615,27532579,27533853,27533994,27537966	1.000000
right_lobe_of_liver2_female_adult_53_years	chr13	106561950	106561951	106561950	-	High_confidence	177	178	198	8.141876	6.507307	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.813131
right_lobe_of_liver2_female_adult_53_years	chr15	48783156	48783178	48783171	+	High_confidence	24	25	86	3.536370	4.925883	chr15	48783168	48783602	DNA|TcMar-Tigger|Tigger8	+	chr15	48783189	48787022	STRG.47819.1	+	48783189,48783897,48784081,48786933	48783371,48783985,48784254,48787022	0.953488
right_lobe_of_liver2_female_adult_53_years	chr7	26346421	26346445	26346422	+	RAMPAGE_only	2	3	12	0.493447	3.277613	chr7	26346432	26346464	DNA|hAT-Ac|OldhAT1	+	chr7	26354056	26372608	SNX10|ENST00000409367.5	+	26354056,26360974,26364534,26365046,26371820,26372490	26354184,26361061,26364635,26365145,26372033,26372608	0.916667
right_lobe_of_liver2_female_adult_53_years	chr16	82056441	82056449	82056441	+	High_confidence	35	35	82	3.371888	5.555875	chr16	82056434	82056642	LINE|L1|L1ME3A	+	chr16	82056452	82098341	HSD17B2|ENST00000568090.5	+	82056452,82068169,82070941,82090901,82098074	82056513,82068382,82071127,82091039,82098341	0.719512
right_lobe_of_liver2_female_adult_53_years	chr11	20034765	20034766	20034765	+	RAMPAGE_only	6	6	8	0.328965	2.807355	chr11	20034734	20035281	LINE|L2|L2b	-	chr11	20022844	20080184	STRG.37629.9	+	20022844,20035958,20043980,20044967,20048727,20049835,20051288,20054079,20055768,20062306,20068185,20068323,20077551,20077992,20080063	20023132,20036097,20044272,20045670,20049195,20049901,20051333,20054240,20055957,20062359,20068209,20068398,20077635,20078104,20080184	0.500000
right_lobe_of_liver2_female_adult_53_years	chr5	77088090	77088109	77088090	+	High_confidence	2	2	9	0.370085	2.947703	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088058	77148533	ZBED3-AS1|ENST00000646953.1	+	77088058,77118319,77147651	77088472,77118521,77148533	0.555556
right_lobe_of_liver2_female_adult_53_years	chr1	77169365	77169381	77169367	-	RAMPAGE_only	5	7	15	0.616809	3.056565	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77088989	77219426	PIGK|ENST00000370812.7	-	77088989,77122274,77154448,77161294,77161593,77163845,77166718,77169259,77206639,77210435,77219309	77092490,77122359,77154621,77161405,77161711,77163942,77166830,77169395,77206731,77210489,77219426	1.000000
right_lobe_of_liver2_female_adult_53_years	chr17	6853909	6853950	6853928	+	High_confidence	16	16	60	2.467235	5.627642	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6895102	ALOX12P2|ENST00000576636.6	+	6853929,6854213,6892002,6894883,6895095	6854060,6854453,6892075,6895006,6895102	0.550000
right_lobe_of_liver2_female_adult_53_years	chr1	54277364	54277365	54277364	-	High_confidence	432	471	567	23.315372	6.242396	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54226638	54277416	STRG.1328.5	-	54226638,54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54257126,54277188	54227160,54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257186,54277416	0.927690
right_lobe_of_liver2_female_adult_53_years	chr17	1744525	1744552	1744551	+	RAMPAGE_only	10	14	38	1.562582	4.534259	chr17	1744527	1744688	SINE|MIR|MIRc	-	chr17	1743025	1755268	SERPINF2|ENST00000382061.4	+	1743025,1744991,1745174,1745332,1745707,1747018,1747308,1748597,1752585,1754121	1743076,1745058,1745213,1745395,1745909,1747162,1747512,1748740,1752790,1755268	0.947368
right_lobe_of_liver2_female_adult_53_years	chr1	20896908	20896923	20896908	-	RAMPAGE_only	3	3	11	0.452326	3.095795	chr1	20896464	20897047	DNA|TcMar-Tigger|Tigger3b	+	chr1	20806469	21050994	EIF4G3|ENST00000264211.12	-	20806469,20810737,20813157,20817391,20825099,20827616,20829146,20840855,20849414,20851257,20853559,20854977,20857402,20860384,20862227,20864475,20865115,20879322,20886200,20893516,20895367,20899696,20904882,20941490,20950002,20969473,20973001,20980333,20981047,21002712,21050865	20807500,20810884,20813239,20817538,20825198,20827698,20829272,20841028,20849530,20851478,20853677,20855071,20857497,20860517,20862332,20864712,20865262,20879520,20886371,20893636,20895501,20899943,20904971,20942330,20950111,20969596,20973099,20980448,20981227,21002808,21050994	0.818182
right_lobe_of_liver2_female_adult_53_years	chr19	55677172	55677173	55677172	+	High_confidence	9	10	10	0.411206	3.121928	chr19	55677165	55677362	SINE|MIR|MIR	+	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	1.000000
right_lobe_of_liver2_female_adult_53_years	chr8	61578141	61578142	61578141	+	High_confidence	503	508	520	21.382704	6.261383	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.973077
right_lobe_of_liver2_female_adult_53_years	chr19	7732791	7732793	7732792	-	High_confidence	14	23	23	0.945773	4.023137	chr19	7732758	7732907	SINE|Alu|FLAM_C	+	chr19	7728963	7732793	STRG.54512.1	-	7728963,7729820,7730018,7730350,7730754,7731025,7731265,7731660,7732047,7732791	7729504,7729936,7730167,7730440,7730859,7731088,7731319,7731771,7732122,7732793	1.000000
right_lobe_of_liver2_female_adult_53_years	chr9	94640251	94640285	94640284	-	High_confidence	38	49	198	8.141876	6.523765	chr9	94640267	94640989	LINE|L2|L2a	-	chr9	94603132	94640249	FBP1|NM_001127628.1	-	94603132,94605456,94606814,94609920,94617767,94620328,94639140,94640043	94603572,94605576,94606952,94610061,94617860,94620491,94639334,94640249	0.964646
right_lobe_of_liver2_female_adult_53_years	chr5	57650652	57650678	57650677	+	High_confidence	56	62	326	13.405311	7.066521	chr5	57650666	57651278	LINE|L1|L1PB4	-	chr5	57650649	57680855	STRG.18532.2	+	57650649,57665250,57678988	57650869,57665512,57680855	0.644172
right_lobe_of_liver2_female_adult_53_years	chr3	9973632	9973667	9973632	-	RAMPAGE_only	5	5	14	0.575688	3.238901	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.928571
right_lobe_of_liver2_female_adult_53_years	chr4	185620092	185620133	185620125	-	RAMPAGE_only	7	9	42	1.727065	4.499228	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.785714
right_lobe_of_liver2_female_adult_53_years	chr10	95472771	95472789	95472777	-	RAMPAGE_only	3	3	14	0.575688	3.807355	chr10	95472588	95472747	SINE|MIR|MIR	-	chr10	95321176	95481390	STRG.36174.6	-	95321176,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95381684,95383984,95384237,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95437489,95441125,95472729	95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95381799,95384114,95384285,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95437555,95441180,95481390	0.857143
right_lobe_of_liver2_female_adult_53_years	chr3	187076198	187076676	187076465	+	RAMPAGE_only	120	123	1880	77.306700	6.418348	chr3	187076438	187076681	LINE|L2|L2c	-	chr3	187071973	187078551	ST6GAL1|ENST00000470633.1	+	187071973,187073404,187075561	187072947,187074333,187078551	0.995745
right_lobe_of_liver2_female_adult_53_years	chr19	54617147	54617153	54617147	+	High_confidence	4	4	9	0.370085	3.169925	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.888889
right_lobe_of_liver2_female_adult_53_years	chr6	159716424	159716470	159716424	+	High_confidence	3	4	18	0.740171	4.169925	chr6	159716167	159716546	LTR|ERVL-MaLR|MLT1L	-	chr6	159716456	159749415	STRG.25224.6	+	159716456,159726657,159736257,159738989,159742087,159743664,159748190	159716596,159726853,159736295,159739045,159742146,159743792,159749415	0.611111
right_lobe_of_liver2_female_adult_53_years	chr1	205512290	205512317	205512316	+	High_confidence	40	40	72	2.960682	5.668359	chr1	205512088	205512401	LINE|L2|L2	-	chr1	205512290	205524355	STRG.4821.11	+	205512290,205523146,205524231	205512460,205523625,205524355	0.777778
right_lobe_of_liver2_female_adult_53_years	chr5	42825895	42825927	42825895	-	High_confidence	68	97	273	11.225920	5.989411	chr5	42825250	42825999	LTR|ERV1|LTR1F	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.981685
right_lobe_of_liver2_female_adult_53_years	chr7	151806639	151806650	151806639	+	High_confidence	4	4	12	0.493447	2.913977	chr7	151806685	151806943	SINE|Alu|AluSz6	+	chr7	151806615	151807642	AC093583.1|ENST00000481153.3	+	151806615,151807442	151807036,151807642	0.583333
right_lobe_of_liver2_female_adult_53_years	chr3	142684053	142684077	142684053	+	RAMPAGE_only	2	2	10	0.411206	3.169925	chr3	142683987	142684094	LINE|RTE-BovB|MamRTE1	+	chr3	142689629	142698438	PLS1|ENST00000483507.1	+	142689629,142694468,142697952	142689813,142694547,142698438	0.600000
right_lobe_of_liver2_female_adult_53_years	chr15	34588450	34588453	34588452	-	High_confidence	7	12	15	0.616809	3.773557	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.733333
right_lobe_of_liver2_female_adult_53_years	chr14	94735759	94735760	94735759	-	RAMPAGE_only	414	415	415	17.065043	6.029842	chr14	94735486	94735994	LTR|ERVL-MaLR|MLT1H1	+	chr14	94378375	94390693	SERPINA1|ENST00000393088.8	-	94378375,94379463,94380870,94382591,94388559,94388800,94390456	94378640,94379611,94381141,94383241,94388663,94389010,94390693	0.995181
right_lobe_of_liver2_female_adult_53_years	chr3	142400609	142400709	142400688	-	RAMPAGE_only	17	20	120	4.934470	5.143936	chr3	142400663	142400942	SINE|Alu|AluSg	+	chr3	142309391	142412655	XRN1|ENST00000498077.6	-	142309391,142312597,142318591,142318789,142329433,142332374,142332966,142335447,142347233,142355400,142356911,142359861,142365046,142365309,142370484,142371238,142375797,142376478,142380081,142383299,142384522,142397328,142400443,142403673,142403868,142404906,142412543	142311813,142312758,142318694,142318903,142329615,142332534,142333089,142335509,142347342,142355496,142357119,142359931,142365179,142365366,142370620,142371328,142375944,142376594,142380180,142383413,142384685,142397460,142400547,142403772,142403989,142405073,142412655	0.975000
right_lobe_of_liver2_female_adult_53_years	chr16	4015645	4015685	4015668	-	High_confidence	6	6	26	1.069135	4.392747	chr16	4015652	4015685	SINE|MIR|MIR	+	chr16	3963167	4015669	STRG.49518.2	-	3963167,3974668,3977481,3979115,3983231,3988993,3992145,3993405,4007367,4015561	3966966,3974710,3977630,3979275,3983440,3989096,3992363,3993510,4007558,4015669	0.846154
right_lobe_of_liver2_female_adult_53_years	chr9	123758077	123758099	123758098	-	High_confidence	3	3	8	0.328965	2.521641	chr9	123758093	123758254	SINE|MIR|MIRb	-	chr9	123569544	123757759	DENND1A|ENST00000474676.1	-	123569544,123583168,123609435,123630375,123652012,123667025,123671290,123757702	123569595,123583270,123609481,123630476,123652123,123667079,123671371,123757759	0.875000
right_lobe_of_liver2_female_adult_53_years	chr1	179856172	179856173	179856172	-	RAMPAGE_only	4	4	6	0.246724	2.584963	chr1	179855896	179856189	SINE|Alu|AluSz	+	chr1	179839966	179877772	STRG.4195.2	-	179839966,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877772	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	230856036	230856049	230856036	-	High_confidence	3	3	11	0.452326	3.095795	chr1	230855985	230856233	SINE|MIR|MIRb	+	chr1	230837118	230856036	C1orf198|NM_001136495.1	-	230837118,230843353,230855667,230855877	230839908,230843896,230855718,230856036	0.818182
right_lobe_of_liver2_female_adult_53_years	chr3	187024854	187024855	187024854	+	RAMPAGE_only	9	11	11	0.452326	3.459432	chr3	187024583	187024927	LINE|L1|L1MC5a	+	chr3	187021876	187078553	ST6GAL1|NM_003032.2	+	187021876,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	1.000000
right_lobe_of_liver2_female_adult_53_years	chr7	76135330	76135347	76135330	-	High_confidence	7	7	12	0.493447	3.251629	chr7	76135264	76135657	LTR|ERVL|LTR40b	+	chr7	76113025	76135521	STRG.26820.2	-	76113025,76128619,76131987,76134208,76135218	76117889,76128782,76132176,76134403,76135521	0.833333
right_lobe_of_liver2_female_adult_53_years	chr3	187041633	187041668	187041633	+	RAMPAGE_only	2	2	15	0.616809	3.323231	chr3	187041603	187041758	SINE|MIR|MIRb	+	chr3	187025478	187043084	ST6GAL1|ENST00000423451.5	+	187025478,187038741,187042653	187025517,187038873,187043084	0.800000
right_lobe_of_liver2_female_adult_53_years	chr8	99892036	99892057	99892056	-	RAMPAGE_only	187	187	463	19.038831	5.136569	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.993521
right_lobe_of_liver2_female_adult_53_years	chr2	227339320	227339348	227339331	+	High_confidence	6	6	17	0.699050	3.852169	chr2	227339254	227339802	LTR|ERVL-MaLR|MLT1G3	-	chr2	227340291	227357381	MFF|ENST00000456345.1	+	227340291,227347225,227355676,227356985	227340380,227347384,227355761,227357381	0.705882
right_lobe_of_liver2_female_adult_53_years	chr11	77175226	77175260	77175226	+	High_confidence	9	9	26	1.069135	4.286790	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
right_lobe_of_liver2_female_adult_53_years	chr5	42517326	42517373	42517372	+	RAMPAGE_only	3	3	12	0.493447	3.277613	chr5	42517336	42517454	LINE|L2|L2a	+	chr5	42548042	42721878	GHR|ENST00000618088.4	+	42548042,42565863,42629037,42688889,42694916,42699823,42711206,42713428,42718051,42718452	42548151,42565944,42629103,42689019,42695089,42700002,42711372,42713519,42718121,42721878	0.500000
right_lobe_of_liver2_female_adult_53_years	chr3	61042065	61042066	61042065	-	RAMPAGE_only	4	4	7	0.287844	2.521641	chr3	61042044	61042278	LTR|ERVL-MaLR|MLT1J2	+	chr3	60535809	61251384	FHIT|ENST00000490952.1	-	60535809,60821918,61165574,61166972,61200616,61251300	60536979,60822011,61165828,61167042,61200665,61251384	0.571429
right_lobe_of_liver2_female_adult_53_years	chr2	55266409	55266416	55266415	-	RAMPAGE_only	4	4	8	0.328965	2.750000	chr2	55266241	55266539	SINE|Alu|AluSz	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.750000
right_lobe_of_liver2_female_adult_53_years	chr1	160350228	160350229	160350228	+	High_confidence	7	7	11	0.452326	2.845351	chr1	160350194	160350231	LINE|RTE-BovB|MamRTE1	-	chr1	160350104	160355753	NCSTN|ENST00000424645.6	+	160350104,160351287,160351695,160352053,160352886,160353159,160354117,160355654	160350250,160351372,160351805,160352206,160352991,160353237,160354290,160355753	1.000000
right_lobe_of_liver2_female_adult_53_years	chr16	28688747	28688748	28688747	+	High_confidence	4	4	6	0.246724	2.584963	chr16	28688394	28688869	LTR|ERVL|LTR41B	+	chr16	28688557	28735730	EIF3C|NM_001199142.1	+	28688557,28711656,28713700,28713908,28714320,28714635,28714818,28715306,28723163,28723447,28724321,28724657,28724918,28726604,28727020,28731828,28734519,28734777,28734931,28735172,28735430	28688828,28711787,28713766,28714098,28714446,28714690,28714928,28715434,28723323,28723551,28724463,28724783,28725012,28726795,28727245,28732192,28734679,28734843,28735019,28735335,28735730	1.000000
right_lobe_of_liver2_female_adult_53_years	chr14	81427409	81427444	81427409	-	High_confidence	5	5	19	0.781291	3.426367	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	1.000000
right_lobe_of_liver2_female_adult_53_years	chr19	10825186	10825221	10825220	+	RAMPAGE_only	12	12	22	0.904653	3.624680	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	1.000000
right_lobe_of_liver2_female_adult_53_years	chr21	44483014	44483022	44483014	+	High_confidence	13	13	30	1.233618	4.415061	chr21	44483021	44483326	SINE|Alu|AluSz	+	chr21	44483029	44484500	STRG.58240.1	+	44483029,44484433	44483435,44484500	0.900000
right_lobe_of_liver2_female_adult_53_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	20	20	20	0.822412	2.663865	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.850000
right_lobe_of_liver2_female_adult_53_years	chr1	95117527	95117581	95117527	+	High_confidence	6	6	26	1.069135	4.180833	chr1	95117576	95117935	LINE|L1|L1M4b	+	chr1	95117438	95173878	TMEM56|ENST00000456991.5	+	95117438,95121054,95143890,95148701,95150207,95151324,95173815	95117827,95121184,95144056,95148791,95150266,95151419,95173878	0.961538
right_lobe_of_liver2_female_adult_53_years	chr4	73414907	73414917	73414907	+	RAMPAGE_only	9	9	18	0.740171	3.616875	chr4	73414754	73414918	SINE|MIR|MIR	-	chr4	73413573	73415395	ALB|ENST00000504043.1	+	73413573,73415034	73413634,73415395	0.722222
right_lobe_of_liver2_female_adult_53_years	chr11	72111412	72111465	72111440	-	High_confidence	2	2	11	0.452326	3.121928	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.909091
right_lobe_of_liver2_female_adult_53_years	chr17	19006126	19006127	19006126	-	High_confidence	5	8	8	0.328965	3.000000	chr17	19006122	19006230	LINE|L1|L1MD2	-	chr17	18968788	19006109	STRG.51503.1	-	18968788,18976830,18977583,18979548,18988246,19003519,19006021	18971748,18977051,18978850,18979673,18988414,19004169,19006109	0.750000
right_lobe_of_liver2_female_adult_53_years	chr9	114327236	114327242	114327239	+	RAMPAGE_only	414	440	1149	47.247553	5.916538	chr9	114327052	114327433	LTR|ERVL-MaLR|MSTA	+	chr9	114329788	114333256	ORM2|NM_000608.2	+	114329788,114330433,114330791,114331566,114331825,114333068	114330018,114330576,114330862,114331674,114331929,114333256	0.982594
right_lobe_of_liver2_female_adult_53_years	chr18	54945414	54945462	54945414	-	RAMPAGE_only	2	2	12	0.493447	3.277613	chr18	54945305	54945474	SINE|MIR|MIRc	-	chr18	54901510	54942950	CCDC68|ENST00000432185.5	-	54901510,54907785,54917912,54919270,54928799,54934819,54936832,54937956,54940996,54942674	54904415,54907862,54917996,54919376,54928882,54934948,54936958,54938097,54941083,54942950	0.916667
right_lobe_of_liver2_female_adult_53_years	chr4	13698102	13698105	13698102	-	High_confidence	10	13	19	0.781291	3.932138	chr4	13697916	13698275	LTR|ERVL-MaLR|MLT1A0	-	chr4	13658457	13698204	STRG.15053.1	-	13658457,13675981,13697986	13660049,13676130,13698204	0.631579
right_lobe_of_liver2_female_adult_53_years	chr4	2867814	2867959	2867814	+	High_confidence	11	12	73	3.001803	5.278278	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.972603
right_lobe_of_liver2_female_adult_53_years	chr2	218287279	218287280	218287279	-	High_confidence	6	6	8	0.328965	2.500000	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	1.000000
right_lobe_of_liver2_female_adult_53_years	chr2	20207638	20207670	20207669	-	RAMPAGE_only	3	3	7	0.287844	2.521641	chr2	20207439	20207729	SINE|Alu|AluSz	+	chr2	20203817	20224280	SDC1|ENST00000429035.1	-	20203817,20205342,20224190	20204291,20205424,20224280	0.571429
right_lobe_of_liver2_female_adult_53_years	chr7	30594431	30594436	30594431	+	High_confidence	5	5	11	0.452326	2.921928	chr7	30594385	30594501	SINE|MIR|MIR3	+	chr7	30594680	30634033	GARS|ENST00000389266.7	+	30594680,30598795,30599946,30601058,30603033,30603495,30609584,30612095,30615895,30617113,30621392,30622316,30626233,30628559,30631447,30632246,30633734	30595143,30598897,30600049,30601200,30603122,30603572,30609730,30612245,30616058,30617278,30621500,30622462,30626319,30628669,30631541,30632437,30634033	0.818182
right_lobe_of_liver2_female_adult_53_years	chr20	62776909	62776945	62776922	-	High_confidence	8	9	28	1.151376	4.363713	chr20	62776675	62776888	LTR|ERVL|LTR16A	-	chr20	62775903	62776936	STRG.57367.2	-	62775903	62776936	0.642857
right_lobe_of_liver2_female_adult_53_years	chr16	28688557	28688560	28688557	+	High_confidence	7	7	14	0.575688	3.026987	chr16	28688394	28688869	LTR|ERVL|LTR41B	+	chr16	28688557	28735730	EIF3C|NM_001199142.1	+	28688557,28711656,28713700,28713908,28714320,28714635,28714818,28715306,28723163,28723447,28724321,28724657,28724918,28726604,28727020,28731828,28734519,28734777,28734931,28735172,28735430	28688828,28711787,28713766,28714098,28714446,28714690,28714928,28715434,28723323,28723551,28724463,28724783,28725012,28726795,28727245,28732192,28734679,28734843,28735019,28735335,28735730	0.928571
right_lobe_of_liver2_female_adult_53_years	chr20	380623	380634	380633	+	High_confidence	8	8	22	0.904653	3.663533	chr20	380404	380708	SINE|Alu|AluY	+	chr20	380628	397559	TRIB3|NM_021158.4	+	380628,388010,391286,396197	381169,388301,391579,397559	1.000000
right_lobe_of_liver2_female_adult_53_years	chr2	201458835	201458854	201458835	+	RAMPAGE_only	4	4	11	0.452326	2.921928	chr2	201458879	201459004	SINE|Alu|FLAM_C	+	chr2	201451795	201480846	STRADB|ENST00000392249.6	+	201451795,201454745,201458783,201469952,201472954,201474646,201475618,201477618,201478086,201478356,201479488,201480007	201451938,201454852,201458864,201470052,201473076,201474755,201475742,201477790,201478191,201478601,201479531,201480846	0.909091
right_lobe_of_liver2_female_adult_53_years	chr12	7493190	7493281	7493190	+	High_confidence	40	40	231	9.498855	5.877782	chr12	7493019	7493427	LTR|ERVL-MaLR|MLT1J-int	+	chr12	7493200	7496321	STRG.40463.1	+	7493200	7496321	0.865801
right_lobe_of_liver2_female_adult_53_years	chr2	20592714	20592742	20592714	-	High_confidence	4	4	13	0.534568	3.584963	chr2	20592550	20592962	LTR|ERVL-MaLR|MLT1C	-	chr2	20590774	20592548	HS1BP3-IT1|NR_046836.1	-	20590774,20592421	20591247,20592548	0.846154
right_lobe_of_liver2_female_adult_53_years	chr10	29959134	29959135	29959134	+	High_confidence	55	56	67	2.755079	5.201669	chr10	29958967	29959329	LTR|ERVL-MaLR|MLT1A0	+	chr10	29959444	29961086	STRG.34636.1	+	29959444	29961086	0.686567
right_lobe_of_liver2_female_adult_53_years	chr1	196741453	196741461	196741453	+	RAMPAGE_only	5	5	10	0.411206	2.641604	chr1	196741215	196741581	LTR|ERVL-MaLR|THE1D	-	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.900000
right_lobe_of_liver2_female_adult_53_years	chr17	50271485	50271488	50271485	+	High_confidence	69	71	124	5.098953	5.576905	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	0.991935
right_lobe_of_liver2_female_adult_53_years	chr1	56959540	56959545	56959542	-	RAMPAGE_only	2	4	9	0.370085	2.500000	chr1	56959222	56959568	LINE|L2|L2c	-	chr1	56929209	56966015	C8B|ENST00000371237.8	-	56929209,56931809,56933334,56940848,56943695,56945820,56949554,56952047,56954685,56956768,56960019,56965856	56929558,56931878,56933488,56941012,56943824,56946061,56949752,56952180,56954827,56956910,56960176,56966015	0.888889
right_lobe_of_liver2_female_adult_53_years	chr8	143018394	143018434	143018400	-	High_confidence	8	9	55	2.261632	5.021376	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.854545
right_lobe_of_liver2_female_adult_53_years	chr15	92914960	92914974	92914960	+	High_confidence	4	5	8	0.328965	2.521641	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.750000
right_lobe_of_liver2_female_adult_53_years	chr10	86499732	86499741	86499732	-	RAMPAGE_only	2	2	6	0.246724	2.584963	chr10	86499367	86499686	DNA|TcMar-Tigger|MER44A	-	chr10	86435256	86521768	WAPL|ENST00000618527.4	-	86435256,86437919,86443274,86446241,86451966,86453219,86453655,86458988,86460398,86461175,86467278,86470991,86472207,86472611,86473877,86497200,86499717,86517570,86521364,86521674	86437608,86438015,86443363,86446449,86452131,86453335,86453831,86459065,86460496,86461287,86467506,86471103,86472344,86472764,86473973,86497319,86500743,86518091,86521541,86521768	1.000000
right_lobe_of_liver2_female_adult_53_years	chr15	56737902	56737906	56737902	-	RAMPAGE_only	4	4	8	0.328965	2.750000	chr15	56737845	56738254	LTR|ERVL-MaLR|MLT1J2	+	chr15	56630175	56734086	ZNF280D|NM_001002843.2	-	56630175,56635194,56642951,56654197,56654384,56658423,56666394,56666678,56668822,56676669,56677573,56678663,56682253,56689040,56689299,56693097,56700932,56701172,56704120,56707262,56733457	56632122,56635250,56642997,56654234,56654503,56658486,56666535,56666986,56668957,56676816,56677674,56678821,56682477,56689150,56689470,56693215,56701072,56701238,56704267,56707306,56734086	0.875000
right_lobe_of_liver2_female_adult_53_years	chr7	35648461	35648472	35648470	-	RAMPAGE_only	5	9	18	0.740171	3.381580	chr7	35648430	35648540	DNA|hAT-Blackjack|MER63B	+	chr7	35634311	35668579	HERPUD2|ENST00000426180.1	-	35634311,35635134,35638349,35667433,35668542	35634429,35635458,35638472,35667588,35668579	0.833333
right_lobe_of_liver2_female_adult_53_years	chr1	196794245	196794267	196794245	+	RAMPAGE_only	2	2	11	0.452326	2.845351	chr1	196794183	196794475	SINE|Alu|AluSx	+	chr1	196774815	196795406	CFHR3|ENST00000617219.1	+	196774815,196779161,196779796,196788215,196794577	196774944,196779356,196779973,196788347,196795406	0.727273
right_lobe_of_liver2_female_adult_53_years	chr1	42844703	42844754	42844753	-	RAMPAGE_only	5	5	28	1.151376	4.521641	chr1	42844426	42844922	LTR|ERVL|MLT2B4	-	chr1	42841897	42846387	AL512353.1|ENST00000425076.1	-	42841897,42842774,42843403,42844510,42846256	42842013,42842916,42843450,42844610,42846387	0.642857
right_lobe_of_liver2_female_adult_53_years	chr10	94683414	94683502	94683483	+	High_confidence	58	58	227	9.334373	6.173571	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_001128925.1	+	94683493,94687769,94688124,94694916,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94720537,94724533,94733438,94736190	0.977974
right_lobe_of_liver2_female_adult_53_years	chr4	48805141	48805165	48805159	+	High_confidence	135	146	312	12.829623	6.731344	chr4	48805071	48805471	LTR|ERVL-MaLR|MLT1F	+	chr4	48805211	48850036	OCIAD1|ENST00000504654.5	+	48805211,48830576,48832619,48833400,48842635,48848398,48849946	48805330,48830673,48832682,48833481,48842689,48848446,48850036	0.724359
right_lobe_of_liver2_female_adult_53_years	chr7	138076124	138076143	138076124	+	High_confidence	2	2	9	0.370085	2.750000	chr7	138075824	138076186	LTR|ERVL-MaLR|THE1B	-	chr7	138076431	138116913	AKR1D1|ENST00000432161.5	+	138076431,138088600,138091767,138097865,138105306,138106607,138107414,138116619	138076611,138088768,138091884,138097943,138105429,138106717,138107580,138116913	0.555556
right_lobe_of_liver2_female_adult_53_years	chr19	10379686	10379687	10379686	-	High_confidence	8	11	11	0.452326	2.913977	chr19	10379599	10379809	SINE|MIR|MIRb	+	chr19	10368328	10380510	TYK2|ENST00000530829.1	-	10368328,10369756,10378213,10379614,10380379	10368418,10369877,10378426,10379779,10380510	0.818182
right_lobe_of_liver2_female_adult_53_years	chr3	52806921	52807085	52807084	+	RAMPAGE_only	269	327	867	35.651547	6.284549	chr3	52807123	52807216	LINE|CR1|X7B_LINE	+	chr3	52804805	52808796	ITIH3|ENST00000493136.1	+	52804805,52806292,52806900,52807746,52808109,52808551	52806138,52806406,52807105,52807916,52808221,52808796	0.990773
right_lobe_of_liver2_female_adult_53_years	chr3	58526760	58526766	58526765	-	High_confidence	208	209	312	12.829623	5.739406	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	0.977564
right_lobe_of_liver2_female_adult_53_years	chr10	14557121	14557163	14557150	-	High_confidence	3	3	14	0.575688	3.334679	chr10	14556836	14557307	LINE|L2|L2c	+	chr10	14521136	14556414	FAM107B|ENST00000492700.5	-	14521136,14521868,14530331,14556361	14521306,14522019,14530515,14556414	0.928571
right_lobe_of_liver2_female_adult_53_years	chr10	133369930	133370021	133369997	-	RAMPAGE_only	41	57	216	8.882046	6.353303	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.995370
right_lobe_of_liver2_female_adult_53_years	chr22	18149863	18149874	18149868	+	High_confidence	8	8	27	1.110256	3.607887	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.962963
right_lobe_of_liver2_female_adult_53_years	chr13	30376944	30376958	30376944	-	High_confidence	2	2	7	0.287844	2.521641	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30357741	30377145	LINC00426|ENST00000420219.5	-	30357741,30358253,30363160,30372284,30375466,30376826	30357889,30358376,30363226,30372374,30375776,30377145	0.714286
right_lobe_of_liver2_female_adult_53_years	chr15	32677531	32677560	32677531	+	High_confidence	19	19	67	2.755079	5.421414	chr15	32677294	32677614	LTR?|LTR?|MamRep605	+	chr15	32677559	32696626	SCG5|ENST00000498069.5	+	32677559,32679765,32684559,32691709,32696513	32677744,32679915,32684669,32691763,32696626	0.597015
right_lobe_of_liver2_female_adult_53_years	chr1	145687815	145687844	145687815	-	RAMPAGE_only	3	3	14	0.575688	3.392747	chr1	145687814	145687888	DNA|hAT-Ac|OldhAT1	-	chr1	145670984	145691802	PDZK1|ENST00000344770.6	-	145670984,145672729,145673656,145678448,145680911,145682499,145686476,145687811,145691731	145671489,145673020,145673881,145678645,145681107,145682636,145686726,145688023,145691802	0.928571
right_lobe_of_liver2_female_adult_53_years	chr11	111775053	111775099	111775086	-	RAMPAGE_only	3	3	11	0.452326	2.921928	chr11	111774970	111775087	SINE|Alu|AluJo	-	chr11	111726969	111778350	STRG.39783.1	-	111726969,111738699,111742052,111742522,111743375,111747953,111752158,111753442,111754498,111754979,111755294,111759803,111760818,111764804,111765293,111766247,111774986,111778175	111737569,111741612,111742144,111742665,111743530,111748014,111752332,111753577,111754569,111755094,111755450,111759951,111761051,111764905,111765384,111771392,111775113,111778350	0.636364
right_lobe_of_liver2_female_adult_53_years	chr11	47498209	47498210	47498209	-	RAMPAGE_only	6	6	6	0.246724	2.584963	chr11	47498169	47498421	SINE|Alu|AluJr	+	chr11	47487191	47499763	CELF1|ENST00000535982.1	-	47487191,47488836,47499452	47487241,47489024,47499763	0.500000
right_lobe_of_liver2_female_adult_53_years	chr10	133518495	133518496	133518495	-	RAMPAGE_only	8	8	11	0.452326	2.646439	chr10	133518358	133518929	LTR|ERVK|LTR22	-	chr10	133516626	133522143	STRG.37017.7	-	133516626	133522143	0.727273
right_lobe_of_liver2_female_adult_53_years	chr4	73107588	73107589	73107588	+	RAMPAGE_only	12	15	15	0.616809	3.456565	chr4	73107340	73108012	LINE|L2|L2a	-	chr4	73404238	73421412	ALB|ENST00000295897.8	+	73404238,73405115,73406628,73408593,73409354,73410311,73411995,73413419,73415034,73416255,73417530,73418087,73419506,73420253,73421091	73404406,73405173,73406761,73408805,73409487,73410409,73412125,73413634,73415167,73416353,73417669,73418311,73419639,73420321,73421412	1.000000
right_lobe_of_liver2_female_adult_53_years	chr4	41934669	41934684	41934674	-	RAMPAGE_only	38	38	83	3.413009	4.783950	chr4	41934560	41934828	LINE|L2|L2c	+	chr4	41909398	41911497	STRG.15604.1	-	41909398	41911497	0.831325
right_lobe_of_liver2_female_adult_53_years	chr22	50785220	50785228	50785226	+	RAMPAGE_only	4	8	13	0.534568	2.918296	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.846154
right_lobe_of_liver2_female_adult_53_years	chr11	65430105	65430607	65430580	+	RAMPAGE_only	155	188	877	36.062753	6.321802	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
right_lobe_of_liver2_female_adult_53_years	chr6	88662756	88662778	88662777	+	High_confidence	6	6	13	0.534568	3.251629	chr6	88662592	88670501	LTR|ERV1|HERVE-int	+	chr6	88662467	88670909	STRG.23591.1	+	88662467,88664476	88662858,88670909	0.692308
right_lobe_of_liver2_female_adult_53_years	chr17	19386334	19386335	19386334	-	High_confidence	7	7	10	0.411206	3.169925	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.900000
right_lobe_of_liver2_female_adult_53_years	chr16	87841827	87841869	87841868	+	High_confidence	23	38	81	3.330767	5.387611	chr16	87841754	87841942	LTR|ERVL-MaLR|MLT1D	-	chr16	87841252	87853820	STRG.50751.2	+	87841252	87853820	0.938272
right_lobe_of_liver2_female_adult_53_years	chr3	187250276	187250326	187250276	-	RAMPAGE_only	2	2	13	0.534568	3.418296	chr3	187250141	187250238	LINE|CR1|L3	-	chr3	187226226	187243585	MASP1|ENST00000468121.1	-	187226226,187226406,187229759,187241480,187243483	187226295,187226520,187229897,187241555,187243585	0.538462
right_lobe_of_liver2_female_adult_53_years	chr11	44234162	44234217	44234216	+	RAMPAGE_only	4	4	15	0.616809	3.589898	chr11	44234250	44234382	SINE|MIR|MIR3	+	chr11	44096222	44245425	EXT2|ENST00000343631.3	+	44096222,44107682,44109193,44114184,44124788,44126815,44130044,44171610,44197828,44206792,44232352,44234114,44236292,44244148	44096321,44108248,44109283,44114301,44124984,44126955,44130138,44171742,44198018,44206959,44232496,44234243,44236375,44245425	0.933333
right_lobe_of_liver2_female_adult_53_years	chr4	8436014	8436024	8436023	-	RAMPAGE_only	4	6	12	0.493447	3.095795	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.500000
right_lobe_of_liver2_female_adult_53_years	chr2	187520573	187520618	187520573	-	High_confidence	4	4	29	1.192497	4.324863	chr2	187517160	187520609	LINE|L1|L1P3	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.965517
right_lobe_of_liver2_female_adult_53_years	chr3	58136089	58136155	58136154	+	RAMPAGE_only	28	28	73	3.001803	5.148429	chr3	58136192	58136456	SINE|MIR|MIRb	+	chr3	58132077	58172251	FLNB|ENST00000481470.5	+	58132077,58134615,58135978,58138281,58142649,58143472,58145920,58146819,58148205,58148648,58149849,58150104,58153374,58154790,58155959,58159553,58163153,58168439,58170574	58132931,58134772,58136168,58138529,58142752,58143613,58146049,58146993,58148364,58148852,58150002,58150227,58153641,58154928,58156075,58159686,58163330,58169793,58172251	0.698630
right_lobe_of_liver2_female_adult_53_years	chr1	169726085	169726105	169726085	-	RAMPAGE_only	3	3	11	0.452326	2.846439	chr1	169726016	169726301	DNA|hAT-Charlie|Charlie8	-	chr1	169722640	169733659	SELE|ENST00000367775.5	-	169722640,169725728,169725906,169726698,169727348,169727738,169729185,169729487,169731834,169732614,169733575	169724509,169725801,169725928,169726806,169727525,169727927,169729374,169729673,169731942,169732998,169733659	0.909091
right_lobe_of_liver2_female_adult_53_years	chr9	123179165	123179178	123179165	-	RAMPAGE_only	2	3	7	0.287844	2.521641	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	1.000000
right_lobe_of_liver2_female_adult_53_years	chr17	47067487	47067513	47067498	-	High_confidence	283	305	1025	42.148600	6.014629	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.960976
right_lobe_of_liver2_female_adult_53_years	chr1	241548866	241548880	241548879	+	RAMPAGE_only	2	2	8	0.328965	2.807355	chr1	241548929	241549179	SINE|Alu|AluSz6	+	chr1	241532404	241595642	KMO|ENST00000366557.8	+	241532404,241548828,241549676,241550954,241555611,241560664,241562166,241564986,241566490,241568499,241586678,241588747,241590203,241591952	241532498,241548898,241549774,241551044,241555660,241560752,241562332,241565058,241566612,241568647,241586736,241588830,241590263,241595642	0.875000
right_lobe_of_liver2_female_adult_53_years	chr20	37297344	37297345	37297344	+	High_confidence	13	13	13	0.534568	3.392747	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
right_lobe_of_liver2_female_adult_53_years	chr9	134373027	134373106	134373102	+	High_confidence	58	65	213	8.758685	6.422962	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134372774	134440583	STRG.34091.4	+	134372774,134374006,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134373599,134374130,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440583	0.967136
right_lobe_of_liver2_female_adult_53_years	chr8	47360804	47360836	47360804	+	High_confidence	5	5	18	0.740171	3.616875	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47440397	SPIDR|ENST00000521918.6	+	47360818,47396375,47407860,47440322	47360949,47396626,47407961,47440397	0.833333
right_lobe_of_liver2_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	39	39	39	1.603703	2.889040	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
right_lobe_of_liver2_female_adult_53_years	chr18	22873283	22873284	22873283	-	High_confidence	8	8	12	0.493447	3.251629	chr18	22872875	22873256	LTR|ERVL-MaLR|MSTA	-	chr18	22751539	22873576	STRG.53493.4	-	22751539,22872957	22754645,22873576	0.583333
right_lobe_of_liver2_female_adult_53_years	chr1	155058772	155058773	155058772	+	High_confidence	15	15	17	0.699050	3.452820	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.705882
right_lobe_of_liver2_female_adult_53_years	chr9	68975832	68975855	68975832	-	High_confidence	3	3	10	0.411206	3.321928	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.800000
right_lobe_of_liver2_female_adult_53_years	chr20	35732434	35732446	35732445	-	High_confidence	7	7	12	0.493447	2.845351	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.916667
right_lobe_of_liver2_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	128	131	132	5.427917	6.172530	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.757576
right_lobe_of_liver2_female_adult_53_years	chr6	31587200	31587202	31587201	+	High_confidence	9	13	17	0.699050	3.625000	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.941176
right_lobe_of_liver2_female_adult_53_years	chr12	643627	643636	643635	-	High_confidence	54	54	180	7.401705	5.679397	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.650000
right_lobe_of_liver2_female_adult_53_years	chr12	124821647	124821653	124821647	-	RAMPAGE_only	3	4	12	0.493447	3.459432	chr12	124821572	124821735	SINE|MIR|MIR	+	chr12	124785819	124817707	SCARB1|ENST00000544327.1	-	124785819,124787405,124795194,124800123,124807760,124810173,124811869,124814201,124814972,124817549	124786503,124787457,124795268,124800242,124807927,124810289,124811965,124814405,124815114,124817707	0.583333
right_lobe_of_liver2_female_adult_53_years	chr11	58724458	58724506	58724458	-	High_confidence	4	4	16	0.657929	3.640224	chr11	58724345	58724536	LINE|CR1|L3	-	chr11	58708757	58724496	GLYAT|ENST00000611865.4	-	58708757,58710589,58712759,58715315,58724415	58710168,58710761,58712886,58715423,58724496	0.937500
right_lobe_of_liver2_female_adult_53_years	chr9	120471802	120471863	120471802	-	RAMPAGE_only	2	2	22	0.904653	3.621928	chr9	120471770	120471851	LINE|L2|L2	+	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.545455
right_lobe_of_liver2_female_adult_53_years	chr3	182895920	182895963	182895928	-	High_confidence	3	3	14	0.575688	3.392747	chr3	182895589	182896029	LTR|ERV1|LTR46	-	chr3	182895192	182895943	STRG.14376.1	-	182895192	182895943	0.500000
right_lobe_of_liver2_female_adult_53_years	chr1	65218864	65218897	65218895	+	RAMPAGE_only	15	26	59	2.426115	5.255193	chr1	65218928	65219138	LINE|L1|L1M5	+	chr1	65165931	65226429	AK4|ENST00000479060.1	+	65165931,65190709,65218753,65224751,65226062	65166019,65190829,65218926,65224870,65226429	0.898305
right_lobe_of_liver2_female_adult_53_years	chr7	99823524	99823525	99823524	+	High_confidence	49	52	67	2.755079	5.250104	chr7	99822867	99824498	LTR|ERV1|MER52A	+	chr7	99823531	99824076	STRG.27730.1	+	99823531	99824076	0.701493
right_lobe_of_liver2_female_adult_53_years	chr18	22873070	22873071	22873070	-	RAMPAGE_only	31	35	38	1.562582	4.736216	chr18	22872875	22873256	LTR|ERVL-MaLR|MSTA	-	chr18	22723492	22786873	AC090912.2|ENST00000581274.1	-	22723492,22786749	22723749,22786873	0.526316
right_lobe_of_liver2_female_adult_53_years	chr15	32514046	32514048	32514047	-	RAMPAGE_only	10	13	17	0.699050	3.219528	chr15	32513894	32514048	DNA|hAT-Charlie|MER20B	-	chr15	32493865	32526891	STRG.47135.3	-	32493865,32494928,32497488,32499160,32499763,32513893,32522447,32523028,32524470,32526812	32494084,32495070,32497590,32499315,32500341,32514121,32522567,32523213,32524600,32526891	1.000000
right_lobe_of_liver2_female_adult_53_years	chr3	135965670	135965749	135965723	+	High_confidence	3	6	24	0.986894	4.001823	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.958333
right_lobe_of_liver2_female_adult_53_years	chr3	134485416	134485489	134485416	-	High_confidence	6	8	55	2.261632	4.740612	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.927273
right_lobe_of_liver2_female_adult_53_years	chr1	112956793	112956818	112956793	+	High_confidence	12	16	49	2.014909	4.878964	chr1	112956705	112956908	SINE|MIR|MIR	+	chr1	112956519	112968398	SLC16A1-AS1|ENST00000420168.1	+	112956519,112960476,112968034	112956956,112960575,112968398	0.673469
right_lobe_of_liver2_female_adult_53_years	chr2	54631991	54632026	54632021	+	RAMPAGE_only	9	9	31	1.274738	4.440224	chr2	54631930	54632098	SINE|Alu|AluJb	+	chr2	54558393	54662308	SPTBN1|NM_178313.2	+	54558393,54599091,54612160,54616206,54617607,54618077,54621399,54622299,54623478,54624803,54625931,54628096,54628932,54629891,54630854,54632565,54637712,54642982,54644322,54645228,54645927,54646193,54647130,54648985,54649614,54653608,54655069,54655913,54657849,54659153,54659935	54558887,54599243,54612334,54616298,54617688,54618193,54621512,54622487,54623596,54624962,54626234,54628250,54629803,54630029,54631611,54632768,54637803,54643129,54644586,54645453,54646017,54646475,54647261,54649190,54649989,54653853,54655208,54655998,54658046,54659266,54662308	0.903226
right_lobe_of_liver2_female_adult_53_years	chr14	94384423	94384452	94384451	-	RAMPAGE_only	6	7	13	0.534568	2.792481	chr14	94384378	94384501	DNA|hAT-Charlie|MER102c	-	chr14	94383628	94390635	SERPINA1|ENST00000555289.5	-	94383628,94384033,94388559,94388800,94390456	94383647,94384130,94388663,94389010,94390635	0.615385
right_lobe_of_liver2_female_adult_53_years	chr8	118383298	118383310	118383298	-	RAMPAGE_only	3	3	18	0.740171	4.087463	chr8	118383163	118383439	LINE|L2|L2b	-	chr8	118377987	118621945	SAMD12|NM_207506.2	-	118377987,118439831,118580714,118621803	118379700,118439961,118580893,118621945	0.611111
right_lobe_of_liver2_female_adult_53_years	chr3	9792219	9792225	9792219	-	High_confidence	2	2	7	0.287844	2.584963	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.714286
right_lobe_of_liver2_female_adult_53_years	chr8	18063185	18063217	18063215	-	High_confidence	4	8	19	0.781291	3.836592	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.947368
right_lobe_of_liver2_female_adult_53_years	chr13	38354242	38354263	38354262	+	RAMPAGE_only	5	5	9	0.370085	2.947703	chr13	38354306	38354393	LINE|L1|L1M5	+	chr13	38349880	38363619	UFM1|ENST00000239878.8	+	38349880,38349998,38354238,38358092,38359300,38360710	38349921,38350055,38354296,38358132,38359333,38363619	1.000000
right_lobe_of_liver2_female_adult_53_years	chr6	24383294	24383300	24383294	-	High_confidence	2	2	7	0.287844	2.584963	chr6	24383044	24383353	SINE|Alu|AluSp	+	chr6	24171754	24383292	DCDC2|NM_001195610.1	-	24171754,24178329,24205001,24278048,24288851,24290931,24301714,24301967,24353568,24357457,24383180	24174834,24178632,24205102,24278211,24288906,24291078,24301846,24302044,24353623,24357847,24383292	0.571429
right_lobe_of_liver2_female_adult_53_years	chr4	69738976	69739004	69738976	-	RAMPAGE_only	8	11	23	0.945773	4.175736	chr4	69738649	69740208	LTR|ERVL-MaLR|THE1D-int	-	chr4	69726115	69760688	STRG.15947.2	-	69726115,69730500,69733412,69734137,69749720,69754669,69755069,69760458	69727200,69730681,69733507,69734264,69749818,69754798,69755201,69760688	0.956522
right_lobe_of_liver2_female_adult_53_years	chr14	68560023	68560066	68560023	-	High_confidence	2	2	14	0.575688	3.546594	chr14	68559938	68560001	SINE|MIR|MIR3	-	chr14	68559488	68560169	STRG.45933.1	-	68559488	68560169	0.500000
right_lobe_of_liver2_female_adult_53_years	chr19	35137162	35137206	35137205	+	High_confidence	22	22	55	2.261632	4.492040	chr19	35137130	35137263	SINE|MIR|MIRc	-	chr19	35137174	35142991	STRG.55255.5	+	35137174,35140075,35140596,35141131,35141535,35142471,35142719,35142916	35137291,35140140,35140629,35141206,35141572,35142521,35142771,35142991	0.818182
right_lobe_of_liver2_female_adult_53_years	chr1	159958184	159958185	159958184	-	RAMPAGE_only	4	4	7	0.287844	2.584963	chr1	159957877	159958260	LTR|ERVL|ERV3-16A3_LTR	-	chr1	159951491	159954254	SLAMF9|NM_033438.3	-	159951491,159952261,159953308,159954091	159951866,159952534,159953653,159954254	0.571429
right_lobe_of_liver2_female_adult_53_years	chr1	193473079	193473085	193473079	+	High_confidence	6	6	19	0.781291	3.681881	chr1	193473114	193473705	LTR|ERVL|MLT2F	+	chr1	193473214	193941070	STRG.4446.2	+	193473214,193673209,193886320,193899286	193473376,193673292,193886417,193941070	0.631579
right_lobe_of_liver2_female_adult_53_years	chr7	11193339	11193367	11193359	+	High_confidence	3	3	10	0.411206	2.947703	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.800000
right_lobe_of_liver2_female_adult_53_years	chr11	125895226	125895255	125895227	-	RAMPAGE_only	13	21	38	1.562582	4.614369	chr11	125895047	125895200	SINE|Alu|AluSc8	-	chr11	125893484	125896330	PUS3|ENST00000530811.5	-	125893484,125895223,125895906	125894286,125895789,125896330	0.947368
right_lobe_of_liver2_female_adult_53_years	chr11	134467260	134467265	134467264	+	High_confidence	30	31	75	3.084044	5.097378	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134467278	134472158	STRG.40252.1	+	134467278,134467864,134469486	134467615,134467987,134472158	0.960000
right_lobe_of_liver2_female_adult_53_years	chrX	124984301	124984334	124984301	-	High_confidence	17	20	64	2.631717	4.587214	chrX	124984283	124984539	DNA|hAT-Tip100|MamTip2	-	chrX	124894228	124984298	STRG.61073.2	-	124894228,124895980,124963536,124984159	124894352,124896241,124963817,124984298	0.984375
right_lobe_of_liver2_female_adult_53_years	chr19	49928476	49928482	49928476	+	High_confidence	6	6	17	0.699050	3.375000	chr19	49928235	49928532	SINE|Alu|AluY	+	chr19	49928701	49933298	ATF5|ENST00000595125.5	+	49928701,49929242,49930731,49932421	49929006,49929400,49931028,49933298	0.823529
right_lobe_of_liver2_female_adult_53_years	chr11	108224064	108224075	108224074	+	High_confidence	8	8	14	0.575688	3.026987	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.785714
right_lobe_of_liver2_female_adult_53_years	chrX	73994875	73994876	73994875	+	RAMPAGE_only	10	10	10	0.411206	3.321928	chrX	73994826	73995038	SINE|Alu|AluSp	-	chrX	73944594	74010175	STRG.60303.4	+	73944594,73994839,73998767,73998953,74004269	73944662,73994961,73998844,74000496,74010175	0.900000
right_lobe_of_liver2_female_adult_53_years	chr11	77175291	77175303	77175302	+	High_confidence	7	8	13	0.534568	3.238901	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
right_lobe_of_liver2_female_adult_53_years	chr3	146222287	146222319	146222318	-	High_confidence	8	8	26	1.069135	4.363713	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146192338	146222371	STRG.13772.3	-	146192338,146195123,146196631,146199812,146201034,146206525,146220814,146222064,146222199	146194455,146195282,146196793,146200039,146201077,146206761,146220925,146222092,146222371	0.923077
right_lobe_of_liver2_female_adult_53_years	chr10	17891751	17891821	17891768	+	RAMPAGE_only	19	20	60	2.467235	5.254196	chr10	17891627	17892603	LINE|L1|L1MCa	-	chr10	17809343	17911170	MRC1|ENST00000569591.2	+	17809343,17823073,17827541,17833674,17840692,17845288,17849578,17852966,17856241,17861386,17863533,17866561,17870245,17870847,17871981,17873783,17875089,17877899,17879720,17880524,17881066,17885268,17894209,17898033,17900787,17901972,17906885,17907533,17909305,17910214	17809526,17823475,17827715,17833839,17840806,17845435,17849764,17853124,17856352,17861502,17863682,17866761,17870373,17870935,17872126,17873825,17875253,17877967,17879821,17880670,17881181,17885435,17894312,17898266,17900953,17902122,17906999,17907698,17909347,17911170	0.900000
right_lobe_of_liver2_female_adult_53_years	chr13	89574195	89574196	89574195	+	RAMPAGE_only	9	9	10	0.411206	2.947703	chr13	89574150	89574230	LTR|ERVL-MaLR|MLT1N2	+	chr13	89572027	89581255	STRG.44261.1	+	89572027	89581255	0.800000
right_lobe_of_liver2_female_adult_53_years	chr1	112935972	112935996	112935972	-	High_confidence	9	12	28	1.151376	3.972687	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	0.964286
right_lobe_of_liver2_female_adult_53_years	chr1	149229360	149229368	149229360	-	RAMPAGE_only	9	9	18	0.740171	3.690117	chr1	149229335	149229457	SINE|MIR|MIR3	+	chr1	149196450	149285819	STRG.3277.2	-	149196450,149198360,149201013,149240376,149261639,149266968,149285453	149198171,149198484,149201090,149240487,149261791,149267024,149285819	0.888889
right_lobe_of_liver2_female_adult_53_years	chr12	12635947	12635949	12635947	+	RAMPAGE_only	4	8	10	0.411206	3.321928	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	1.000000
right_lobe_of_liver2_female_adult_53_years	chr18	31554911	31554912	31554911	-	RAMPAGE_only	8	8	8	0.328965	2.750000	chr18	31554889	31555114	LTR|ERV1|LTR26D	+	chr18	31542145	31556911	DSG2-AS1|ENST00000583706.5	-	31542145,31543101,31545735,31550037,31554641,31555962	31542321,31543395,31545906,31550397,31554715,31556911	0.500000
right_lobe_of_liver2_female_adult_53_years	chr12	53033909	53034022	53034021	+	RAMPAGE_only	16	17	91	3.741973	5.937747	chr12	53034069	53034237	DNA|hAT-Charlie|MER20B	+	chr12	53006456	53040462	EIF4B|ENST00000416762.7	+	53006456,53016472,53018797,53021805,53022492,53027781,53028014,53033805,53034611,53037408,53038355,53039237,53039629,53040142	53006496,53016610,53019006,53021860,53022627,53027919,53028188,53034034,53034709,53037622,53038411,53039343,53039702,53040462	0.923077
right_lobe_of_liver2_female_adult_53_years	chr15	89200794	89200975	89200811	+	RAMPAGE_only	18	23	167	6.867138	6.153070	chr15	89200800	89201095	SINE|Alu|AluSq	+	chr15	89088149	89202360	ABHD2|NM_007011.7	+	89088149,89090282,89102499,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89202360	1.000000
right_lobe_of_liver2_female_adult_53_years	chr15	79897454	79897467	79897454	-	High_confidence	19	19	40	1.644823	4.398857	chr15	79897435	79897625	DNA|TcMar-Tigger|Tigger3c	-	chr15	79844975	79897379	MTHFS|ENST00000559722.2	-	79844975,79889092,79897160	79845442,79889354,79897379	0.950000
right_lobe_of_liver2_female_adult_53_years	chr2	73072191	73072234	73072222	-	High_confidence	5	5	21	0.863532	3.784942	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.619048
right_lobe_of_liver2_female_adult_53_years	chr11	47172314	47172315	47172314	-	High_confidence	5	5	8	0.328965	3.000000	chr11	47172030	47172274	SINE|MIR|MIRb	-	chr11	47166267	47171557	ARFGAP2|ENST00000527776.5	-	47166267,47166505,47166759,47167908,47168122,47171452	47166386,47166599,47166886,47168043,47168251,47171557	0.750000
right_lobe_of_liver2_female_adult_53_years	chr19	55280196	55280262	55280218	-	High_confidence	5	8	23	0.945773	3.468577	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
right_lobe_of_liver2_female_adult_53_years	chr9	107284872	107284897	107284872	+	High_confidence	2	3	11	0.452326	3.321928	chr9	107284763	107284913	SINE|MIR|MIRb	+	chr9	107284768	107332194	RAD23B|NM_001244713.1	+	107284768,107300140,107302034,107306378,107311681,107318751,107321982,107323889,107324833,107329542	107284913,107300222,107302114,107306647,107311737,107318879,107322118,107324017,107325004,107332194	0.636364
right_lobe_of_liver2_female_adult_53_years	chr6	28354137	28354138	28354137	-	High_confidence	4	4	6	0.246724	2.584963	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324748	28354125	STRG.22328.1	-	28324748,28327382,28329302,28336789,28353861	28326854,28327533,28329714,28336943,28354125	0.666667
right_lobe_of_liver2_female_adult_53_years	chr17	5412954	5412961	5412960	-	RAMPAGE_only	9	9	15	0.616809	3.664498	chr17	5412904	5413023	LTR|ERV1|LTR78B	+	chr17	5408736	5418229	NUP88|ENST00000572809.1	-	5408736,5410702,5414008,5416512,5418014	5408909,5410789,5414134,5416682,5418229	0.666667
right_lobe_of_liver2_female_adult_53_years	chr12	57532020	57532048	57532047	-	RAMPAGE_only	3	3	6	0.246724	2.584963	chr12	57531960	57532134	LINE|RTE-BovB|MamRTE1	+	chr12	57530310	57547141	DCTN2|ENST00000434715.7	-	57530310,57532014,57532212,57532571,57532732,57532983,57533237,57533952,57534291,57535055,57535483,57535748,57538518,57541363,57546027,57547027	57530775,57532106,57532315,57532643,57532810,57533022,57533303,57534097,57534452,57535154,57535545,57535845,57538524,57541372,57546096,57547141	0.833333
right_lobe_of_liver2_female_adult_53_years	chr16	28526372	28526401	28526372	-	High_confidence	14	17	43	1.768185	5.176151	chr16	28526223	28526649	LTR|ERV1|MER67A	+	chr16	28499372	28526403	STRG.49917.1	-	28499372,28501975,28503694,28503877,28526322	28499920,28502134,28503793,28504050,28526403	0.744186
right_lobe_of_liver2_female_adult_53_years	chr2	55618850	55618870	55618850	-	High_confidence	5	6	10	0.411206	3.321928	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.700000
right_lobe_of_liver2_female_adult_53_years	chrX	118884882	118884885	118884882	+	High_confidence	28	31	44	1.809306	4.927799	chrX	118884536	118885000	LTR|ERV1|LTR71A	+	chrX	118884902	118892416	STRG.60827.1	+	118884902,118892111	118885223,118892416	0.681818
right_lobe_of_liver2_female_adult_53_years	chr14	57274816	57274834	57274832	+	RAMPAGE_only	4	7	12	0.493447	3.459432	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.833333
right_lobe_of_liver2_female_adult_53_years	chr2	209495505	209495516	209495515	+	RAMPAGE_only	3	3	8	0.328965	2.521641	chr2	209495053	209495629	LINE|L1|L1P3	+	chr2	209424057	209730518	MAP2|ENST00000199940.10	+	209424057,209507591,209580035,209625052,209653141,209678571,209680749,209700276,209704449,209705579,209709913,209723594,209725708,209729849,209730181	209424276,209507641,209580100,209625129,209653432,209678685,209680827,209700338,209704620,209705727,209710254,209723687,209725790,209729962,209730518	0.875000
right_lobe_of_liver2_female_adult_53_years	chr12	55990087	55990091	55990087	+	High_confidence	6	6	10	0.411206	2.947703	chr12	55990127	55990424	SINE|Alu|AluSc	+	chr12	55990720	56003734	STRG.41876.1	+	55990720,55991359,55992096,55997614,56002211,56002542,56003617	55990804,55991453,55997339,55997723,56002271,56002720,56003734	0.900000
right_lobe_of_liver2_female_adult_53_years	chr4	82881864	82881904	82881865	-	High_confidence	4	6	20	0.822412	3.892407	chr4	82881686	82881823	LINE|L2|L2c	-	chr4	82818671	82881937	SEC31A|ENST00000505472.5	-	82818671,82821036,82824554,82827368,82828999,82842139,82844385,82845200,82848803,82851430,82853569,82854902,82856951,82857688,82861630,82862533,82863317,82864361,82866807,82867154,82870324,82871943,82874610,82875726,82878729,82880798,82881857	82819253,82821108,82824674,82827632,82829058,82842481,82844509,82845293,82848977,82851604,82853715,82855029,82857130,82857764,82861708,82862572,82863392,82864598,82866960,82867316,82870424,82872086,82874751,82875822,82878928,82880922,82881937	0.950000
right_lobe_of_liver2_female_adult_53_years	chr1	205099772	205099790	205099785	-	RAMPAGE_only	3	3	10	0.411206	3.169925	chr1	205099767	205099820	LINE|RTE-BovB|MamRTE1	-	chr1	205086141	205121966	STRG.4807.3	-	205086141,205094872,205096681,205097325,205098988,205099740,205099910,205100151,205101599,205103856,205105027,205114788,205115857,205121854	205088815,205095064,205096911,205097395,205099106,205099812,205100064,205100271,205101709,205104019,205105168,205114905,205115883,205121966	0.900000
right_lobe_of_liver2_female_adult_53_years	chr4	152412494	152412495	152412494	-	High_confidence	9	9	14	0.575688	3.392747	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.928571
right_lobe_of_liver2_female_adult_53_years	chr18	74551071	74551072	74551071	+	High_confidence	92	92	95	3.906456	5.735200	chr18	74550956	74551330	LTR|ERVL-MaLR|MSTA	+	chr18	74551114	74585011	STRG.54230.1	+	74551114,74556337,74559322,74560855,74562046,74567232,74571185,74576868,74578162,74580129,74583560,74584495	74551201,74556466,74559472,74561018,74562135,74567433,74571270,74577029,74578327,74580271,74583708,74585011	0.589474
right_lobe_of_liver2_female_adult_53_years	chr14	81170378	81170413	81170412	-	High_confidence	9	12	30	1.233618	4.155756	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.866667
right_lobe_of_liver2_female_adult_53_years	chr7	112452398	112452419	112452415	+	High_confidence	3	5	10	0.411206	3.121928	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112458982	IFRD1|ENST00000440625.5	+	112452057,112455762,112456001,112456913,112458860	112452511,112455867,112456086,112457038,112458982	0.900000
right_lobe_of_liver2_female_adult_53_years	chr12	123390743	123390775	123390743	+	High_confidence	5	5	10	0.411206	3.121928	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.800000
right_lobe_of_liver2_female_adult_53_years	chr1	174874418	174874434	174874418	+	High_confidence	3	3	10	0.411206	3.169925	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.600000
right_lobe_of_liver2_female_adult_53_years	chr9	133602392	133602418	133602417	-	RAMPAGE_only	6	6	18	0.740171	3.614369	chr9	133602245	133602376	SINE|MIR|MIR	-	chr9	133577341	133609364	STRG.34068.2	-	133577341,133580130,133609076	133579429,133580246,133609364	0.611111
right_lobe_of_liver2_female_adult_53_years	chr19	47289916	47289918	47289917	+	High_confidence	7	9	13	0.534568	3.546594	chr19	47289949	47290265	LINE|L1|L1M1	+	chr19	47289790	47297045	STRG.55698.2	+	47289790,47291977,47296599	47290061,47292173,47297045	0.538462
right_lobe_of_liver2_female_adult_53_years	chr20	44887698	44887712	44887698	+	RAMPAGE_only	4	4	11	0.452326	2.663533	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885751	44901756	YWHAB|ENST00000445830.1	+	44885751,44886878,44887647,44901530	44885886,44886978,44887742,44901756	0.545455
right_lobe_of_liver2_female_adult_53_years	chr10	68307161	68307194	68307161	-	High_confidence	4	5	19	0.781291	3.616349	chr10	68307029	68307329	SINE|Alu|AluSx1	-	chr10	68287026	68306879	PBLD|ENST00000277795.8	-	68287026,68292009,68292128,68296885,68306760	68289019,68292039,68292238,68296985,68306879	0.789474
right_lobe_of_liver2_female_adult_53_years	chr6	43013379	43013393	43013392	-	High_confidence	6	6	14	0.575688	3.807355	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
right_lobe_of_liver2_female_adult_53_years	chr6	131844739	131844760	131844739	+	High_confidence	2	2	9	0.370085	2.947703	chr6	131844197	131845043	DNA|TcMar-Tigger|Tigger6a	+	chr6	131844474	131893884	STRG.24396.4	+	131844474,131847775,131849989,131851141,131852174,131854925,131858667,131860386,131861594,131864505,131864865,131868017,131869357,131872069,131872922,131874267,131875775,131876991,131878541,131879879,131882344,131883693,131884930,131886561,131890340	131844980,131847848,131850106,131851267,131852235,131855023,131858747,131860506,131861704,131864571,131864938,131868126,131869489,131872101,131873050,131874337,131875863,131877161,131878593,131880034,131882474,131883774,131885063,131886724,131893884	0.888889
right_lobe_of_liver2_female_adult_53_years	chr3	52800576	52800637	52800635	+	RAMPAGE_only	176	344	547	22.492960	7.362785	chr3	52800685	52800758	SINE|MIR|MIR1_Amn	+	chr3	52802203	52802806	ITIH3|ENST00000465314.5	+	52802203,52802666	52802519,52802806	0.630713
right_lobe_of_liver2_female_adult_53_years	chr14	50159437	50159441	50159440	-	RAMPAGE_only	15	15	25	1.028015	4.084963	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.960000
right_lobe_of_liver2_female_adult_53_years	chr18	8301657	8301699	8301657	+	RAMPAGE_only	2	2	12	0.493447	3.277613	chr18	8301614	8301981	LINE|L2|L2a	-	chr18	8121851	8406666	PTPRM|ENST00000577827.5	+	8121851,8143646,8244057,8247844,8296367,8314780,8319177,8343422,8370889,8376045,8376461,8379166,8380295,8384560,8387071,8394475,8406108	8122316,8143779,8244209,8247919,8296455,8314857,8319214,8343520,8371006,8376200,8378414,8379340,8380427,8384686,8387235,8394611,8406666	0.666667
right_lobe_of_liver2_female_adult_53_years	chr14	104766982	104766988	104766982	-	High_confidence	3	3	6	0.246724	2.584963	chr14	104766824	104767423	LTR|ERV1|LTR71B	-	chr14	104747315	104766963	STRG.46809.2	-	104747315,104756405,104766842	104748773,104757420,104766963	0.833333
right_lobe_of_liver2_female_adult_53_years	chr8	94929272	94929276	94929275	-	RAMPAGE_only	80	80	119	4.893350	5.854675	chr8	94929243	94929358	SINE|MIR|MIR	-	chr8	94925971	94949366	TP53INP1|ENST00000448464.6	-	94925971,94932069,94939859,94940829,94949153	94930728,94932107,94940220,94941091,94949366	0.991597
right_lobe_of_liver2_female_adult_53_years	chr2	233012604	233012638	233012637	+	High_confidence	20	23	117	4.811108	4.158816	chr2	233012609	233012781	DNA|hAT-Tip100|MER45A	+	chr2	233012613	233015885	AC106876.1|ENST00000409905.1	+	233012613,233013139,233015706	233012969,233013247,233015885	0.991453
right_lobe_of_liver2_female_adult_53_years	chr1	89272819	89272883	89272859	-	High_confidence	18	18	104	4.276541	5.320647	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.961538
right_lobe_of_liver2_female_adult_53_years	chr11	61529403	61529444	61529403	-	High_confidence	11	13	70	2.878441	4.802228	chr11	61529333	61529542	SINE|MIR|MIRb	-	chr11	61515412	61530252	STRG.38234.6	-	61515412,61523074,61523826,61524362,61527914,61529361	61518731,61523274,61523941,61524532,61528185,61530252	0.857143
right_lobe_of_liver2_female_adult_53_years	chr1	182292465	182292469	182292465	-	High_confidence	46	68	85	3.495250	5.550762	chr1	182292296	182292664	LTR|ERVL-MaLR|THE1B	-	chr1	182289729	182292592	STRG.4256.2	-	182289729	182292592	0.623529
right_lobe_of_liver2_female_adult_53_years	chrX	106716700	106716704	106716703	+	RAMPAGE_only	34	37	53	2.179391	4.724881	chrX	106716671	106716865	LINE|L2|L2c	-	chrX	106726663	106796993	RNF128|ENST00000255499.2	+	106726663,106772912,106785064,106787917,106790185,106791065,106795579	106727397,106773160,106785136,106788000,106790282,106791234,106796993	0.943396
right_lobe_of_liver2_female_adult_53_years	chr3	67670898	67670899	67670898	+	RAMPAGE_only	4	4	6	0.246724	2.584963	chr3	67670825	67671224	LINE|L1|L1ME1	-	chr3	67668246	67750669	SUCLG2-AS1|ENST00000496640.2	+	67668246,67669815,67670828,67746770,67749852,67750413	67668277,67669909,67671004,67746957,67749970,67750669	0.666667
right_lobe_of_liver2_female_adult_53_years	chr17	29042796	29042822	29042821	+	High_confidence	12	12	31	1.274738	4.389365	chr17	29042849	29042963	DNA|TcMar?|Eulor8	+	chr17	29042899	29057218	PIPOX|NM_016518.2	+	29042899,29044858,29052919,29053412,29054544,29055062,29055812,29056174	29043339,29045007,29053133,29053595,29054691,29055221,29055888,29057218	1.000000
right_lobe_of_liver2_female_adult_53_years	chr3	12648693	12648724	12648723	-	RAMPAGE_only	4	5	18	0.740171	3.807764	chr3	12648598	12648757	SINE|Alu|AluSz6	+	chr3	12584332	12664125	RAF1|ENST00000423275.5	-	12584332,12584846,12585121,12585680,12587590,12590797,12591707,12599690,12600151,12600387,12604135,12606200,12608765,12609232,12618514,12663812	12584657,12584981,12585253,12585799,12587637,12590974,12591792,12599808,12600279,12600415,12604289,12606299,12608923,12609335,12618747,12664125	0.722222
right_lobe_of_liver2_female_adult_53_years	chr2	85354337	85354364	85354363	-	High_confidence	2	2	7	0.287844	2.584963	chr2	85354216	85354326	SINE|MIR|MIR1_Amn	-	chr2	85342087	85354620	RETSAT|ENST00000295802.8	-	85342087,85343638,85343998,85344238,85344593,85345974,85349383,85350039,85350779,85351679,85354335	85343381,85343798,85344165,85344348,85344732,85346094,85349581,85350241,85351021,85351862,85354620	0.857143
right_lobe_of_liver2_female_adult_53_years	chr11	47569803	47569867	47569866	+	RAMPAGE_only	8	10	34	1.398100	4.241731	chr11	47569909	47570209	SINE|Alu|AluJb	+	chr11	47565897	47573461	PTPMT1|ENST00000527079.2	+	47565897,47569699,47571470	47565986,47569891,47573461	1.000000
right_lobe_of_liver2_female_adult_53_years	chr11	65887614	65887623	65887614	-	High_confidence	3	4	9	0.370085	3.169925	chr11	65887463	65887575	LINE|L2|L2	-	chr11	65884934	65888436	FIBP|ENST00000532229.1	-	65884934,65885077,65885508,65887599,65887933,65888333	65884998,65885186,65885663,65887726,65888132,65888436	0.777778
right_lobe_of_liver2_female_adult_53_years	chr11	65181215	65181246	65181222	+	High_confidence	13	13	56	2.302753	4.794252	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.964286
right_lobe_of_liver2_female_adult_53_years	chr1	156252925	156252930	156252929	-	RAMPAGE_only	9	12	18	0.740171	3.734522	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156250032	156251380	SMG5|ENST00000476954.1	-	156250032,156250857	156250670,156251380	0.666667
right_lobe_of_liver2_female_adult_53_years	chr7	99672951	99672981	99672980	-	RAMPAGE_only	3	4	12	0.493447	2.550341	chr7	99672976	99673059	LINE|L1|L1MC5	+	chr7	99670909	99679996	CYP3A5|ENST00000463907.5	-	99670909,99672579,99674532,99676114,99679825	99671878,99672915,99674585,99676208,99679996	0.750000
right_lobe_of_liver2_female_adult_53_years	chr15	89200380	89200571	89200465	+	RAMPAGE_only	57	75	360	14.803411	5.282357	chr15	89200250	89200502	Retroposon|SVA|SVA_F	-	chr15	89088149	89202360	ABHD2|NM_007011.7	+	89088149,89090282,89102499,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89202360	0.997222
right_lobe_of_liver2_female_adult_53_years	chr10	5699511	5699515	5699511	+	High_confidence	2	2	6	0.246724	2.584963	chr10	5699528	5699730	LINE|L1|L1M7	+	chr10	5699492	5714207	FAM208B|ENST00000463468.5	+	5699492,5712393,5712822,5714134	5699737,5712539,5712918,5714207	0.500000
right_lobe_of_liver2_female_adult_53_years	chr5	150137405	150137421	150137408	-	High_confidence	18	18	45	1.850426	4.834209	chr5	150137246	150137416	SINE|MIR|MIR3	+	chr5	150134856	150137437	PDGFRB|ENST00000517957.1	-	150134856,150135554,150137007,150137399	150135016,150135878,150137053,150137437	0.688889
right_lobe_of_liver2_female_adult_53_years	chr1	54200521	54200558	54200557	+	High_confidence	21	21	36	1.480341	4.405765	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.611111
right_lobe_of_liver2_female_adult_53_years	chr9	89479889	89479890	89479889	-	High_confidence	20	20	20	0.822412	3.521928	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89402924	89479890	SEMA4D|ENST00000540475.5	-	89402924,89405350,89455887,89479571	89403016,89405699,89455953,89479890	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	1655410	1655411	1655410	-	RAMPAGE_only	15	18	21	0.863532	4.021928	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	0.952381
right_lobe_of_liver2_female_adult_53_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	15	16	16	0.657929	3.640224	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.562500
right_lobe_of_liver2_female_adult_53_years	chr17	66223711	66223768	66223711	-	RAMPAGE_only	235	269	1321	54.320293	6.683002	chr17	66223580	66223683	DNA|hAT-Blackjack|MER81	-	chr17	66212038	66220630	APOH|ENST00000585162.1	-	66212038,66216787,66220553	66212188,66216967,66220630	0.694928
right_lobe_of_liver2_female_adult_53_years	chr17	43508342	43508343	43508342	+	RAMPAGE_only	15	16	19	0.781291	3.787144	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	1.000000
right_lobe_of_liver2_female_adult_53_years	chr19	58312200	58312265	58312242	+	RAMPAGE_only	11	11	33	1.356979	4.601410	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.909091
right_lobe_of_liver2_female_adult_53_years	chr19	11344674	11344692	11344674	+	High_confidence	2	2	8	0.328965	2.807355	chr19	11344711	11344763	DNA|hAT-Tip100|MER91A	+	chr19	11344683	11346298	CCDC159|ENST00000589186.5	+	11344683,11345179,11346017	11344755,11345381,11346298	0.625000
right_lobe_of_liver2_female_adult_53_years	chr17	32479860	32479861	32479860	+	High_confidence	19	19	22	0.904653	3.550341	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.818182
right_lobe_of_liver2_female_adult_53_years	chr3	154140252	154140253	154140252	+	RAMPAGE_only	40	40	57	2.343873	4.915966	chr3	154140194	154140347	SINE|MIR|MIRb	-	chr3	154121415	154256548	ARHGEF26|ENST00000496710.5	+	154121415,154121941,154124409,154129573,154149388,154152771,154187684,154191288,154194643,154217868,154225855,154240369,154253115,154254784,154255330	154121519,154123075,154124449,154129719,154149445,154152932,154187837,154191418,154194718,154217958,154226010,154240579,154253183,154254824,154256548	0.947368
right_lobe_of_liver2_female_adult_53_years	chr18	7946878	7946898	7946878	+	High_confidence	27	27	56	2.302753	4.998708	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.821429
right_lobe_of_liver2_female_adult_53_years	chr12	109591265	109591294	109591293	+	RAMPAGE_only	3	3	9	0.370085	3.000000	chr12	109591205	109591326	DNA|hAT-Ac|OldhAT1	+	chr12	109594706	109597261	STRG.42788.10	+	109594706,109595027,109596425	109594903,109595181,109597261	0.888889
right_lobe_of_liver2_female_adult_53_years	chr11	61682287	61682330	61682287	+	High_confidence	2	2	12	0.493447	3.418296	chr11	61682221	61682298	SINE|MIR|MIRc	+	chr11	61682319	61746908	STRG.38236.2	+	61682319,61720111,61720678,61722858,61723433,61725994,61728152,61728930,61731316,61734848,61735560,61735738,61736269,61737181,61737686,61738134,61739464,61740462,61741140,61743531	61682600,61720250,61720890,61722960,61723572,61726082,61728287,61729008,61731441,61735002,61735644,61735816,61736350,61737324,61737755,61738207,61739661,61740592,61741349,61746908	0.833333
right_lobe_of_liver2_female_adult_53_years	chr7	99671277	99671582	99671425	-	RAMPAGE_only	35	35	408	16.777199	5.890623	chr7	99671239	99671795	LINE|L1|L1MD	+	chr7	99648199	99679953	STRG.27722.5	-	99648199,99650072,99652552,99660498,99662815,99663967,99665165,99666600,99666951,99672579,99674532,99676114,99679825	99648400,99650232,99652779,99660659,99662882,99664095,99665314,99666689,99671878,99672679,99674585,99676208,99679953	0.995098
right_lobe_of_liver2_female_adult_53_years	chr19	44947037	44947038	44947037	+	High_confidence	4	4	6	0.246724	2.584963	chr19	44946869	44947167	SINE|Alu|AluSz	+	chr19	44947202	44949565	APOC2|ENST00000590360.2	+	44947202,44948465,44948700,44949158	44947311,44948533,44948860,44949565	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	53889389	53889411	53889410	-	High_confidence	3	4	10	0.411206	2.725481	chr1	53889348	53889564	SINE|MIR|MIRb	+	chr1	53851718	53889733	YIPF1|ENST00000464950.6	-	53851718,53855000,53860055,53866199,53866757,53871371,53878314,53878641,53883112,53888906,53889712	53852270,53855051,53860153,53866382,53866924,53871488,53878402,53878722,53883276,53888986,53889733	0.900000
right_lobe_of_liver2_female_adult_53_years	chr4	186260300	186260309	186260308	-	High_confidence	88	99	156	6.414811	5.494914	chr4	186259848	186260334	DNA|hAT-Charlie|MER1A	-	chr4	186259897	186260297	STRG.17693.1	-	186259897	186260297	0.532051
right_lobe_of_liver2_female_adult_53_years	chr1	43248038	43248082	43248038	-	High_confidence	12	15	37	1.521462	4.486348	chr1	43247843	43248160	SINE|Alu|AluY	+	chr1	43180455	43248124	STRG.1030.3	-	43180455,43215265,43247759	43181784,43215393,43248124	0.837838
right_lobe_of_liver2_female_adult_53_years	chr19	5680234	5680252	5680248	-	High_confidence	8	8	25	1.028015	4.251629	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.960000
right_lobe_of_liver2_female_adult_53_years	chr2	230417615	230417634	230417615	+	High_confidence	2	3	7	0.287844	2.521641	chr2	230417018	230417854	LINE|L1|L1ME3G	-	chr2	230416755	230470530	SP100|ENST00000409897.5	+	230416755,230417590,230440475,230442936,230444177,230446818,230449087,230449560,230450171,230461261,230462434,230464066,230466300,230467119,230469042,230470014	230416881,230417665,230440557,230443099,230444346,230446902,230449150,230449710,230450255,230461414,230462518,230464150,230466354,230467215,230469096,230470530	1.000000
right_lobe_of_liver2_female_adult_53_years	chr6	160101176	160101208	160101207	+	RAMPAGE_only	12	20	49	2.014909	4.892474	chr6	160101091	160101276	LINE|L1|L1MEd	+	chr6	160061630	160106507	IGF2R|ENST00000650503.1	+	160061630,160061752,160062531,160063414,160064400,160064803,160068248,160069867,160071909,160072764,160073212,160073756,160075846,160078200,160079579,160080128,160083949,160084994,160088032,160089915,160096438,160102518,160103745,160104673	160061646,160061928,160062619,160063630,160064531,160064901,160068385,160070058,160072036,160072884,160073469,160073975,160075996,160078362,160079787,160080275,160084184,160085131,160089253,160090103,160096625,160102671,160103815,160106507	0.959184
right_lobe_of_liver2_female_adult_53_years	chr16	31092792	31092802	31092801	-	RAMPAGE_only	6	6	10	0.411206	2.921928	chr16	31092766	31093079	SINE|Alu|AluSg	+	chr16	31090841	31094760	VKORC1|ENST00000300851.10	-	31090841,31093311,31094556	31091342,31093482,31094760	1.000000
right_lobe_of_liver2_female_adult_53_years	chr9	37603214	37603222	37603214	+	RAMPAGE_only	3	3	7	0.287844	2.807355	chr9	37603152	37603302	SINE|MIR|MIR3	+	chr9	37650999	37746904	FRMPD1|ENST00000377765.7	+	37650999,37692637,37707415,37708398,37711349,37719068,37724224,37729727,37730983,37732303,37733472,37733729,37735551,37737095,37740077,37744388	37651094,37692742,37707573,37708501,37711395,37719176,37724320,37729853,37731103,37732440,37733599,37733825,37735734,37737243,37740884,37746904	0.571429
right_lobe_of_liver2_female_adult_53_years	chr14	39064912	39064974	39064912	-	RAMPAGE_only	13	13	36	1.480341	4.440351	chr14	39064766	39064897	SINE|Alu|FLAM_C	-	chr14	39031918	39088723	SEC23A|ENST00000537403.5	-	39031918,39039030,39040731,39042785,39045162,39048651,39055142,39061764,39063323,39064912,39067172,39074414,39075934,39085761,39086928,39087523	39033328,39039096,39040887,39042872,39045324,39048729,39055296,39061871,39063413,39064993,39067296,39074530,39076093,39085906,39087008,39088723	0.916667
right_lobe_of_liver2_female_adult_53_years	chr4	170226586	170226588	170226587	+	High_confidence	93	110	153	6.291450	6.124688	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.686275
right_lobe_of_liver2_female_adult_53_years	chr2	170489045	170489076	170489069	+	RAMPAGE_only	10	11	33	1.356979	4.260333	chr2	170489103	170489251	SINE|MIR|MIR3	+	chr2	170180148	170499808	MYO3B|ENST00000484338.6	+	170180148,170199207,170200149,170214378,170214728,170217318,170235990,170335384,170369221,170382015,170383072,170383709,170386188,170387105,170391519,170392380,170400187,170401480,170402847,170404246,170405544,170407714,170443966,170463367,170466505,170498591,170499645	170180181,170199391,170200284,170214483,170214828,170217395,170236136,170335450,170369377,170382112,170383189,170383814,170386272,170387308,170391618,170392495,170400314,170401691,170402995,170404400,170405633,170407844,170444046,170463445,170466711,170498703,170499808	0.636364
right_lobe_of_liver2_female_adult_53_years	chr8	11864377	11864388	11864387	-	RAMPAGE_only	3	3	6	0.246724	2.584963	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	1.000000
right_lobe_of_liver2_female_adult_53_years	chr19	36378027	36378057	36378056	+	High_confidence	9	12	35	1.439220	3.197412	chr19	36377983	36378063	LTR|ERV1|LTR65	-	chr19	36378027	36378832	AC092296.1|ENST00000587018.1	+	36378027,36378439	36378200,36378832	0.971429
right_lobe_of_liver2_female_adult_53_years	chr8	85378112	85378113	85378112	-	High_confidence	36	36	36	1.480341	3.343575	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.972222
right_lobe_of_liver2_female_adult_53_years	chr10	95472817	95472832	95472817	-	RAMPAGE_only	3	3	8	0.328965	2.807355	chr10	95472747	95473048	SINE|Alu|AluSz	+	chr10	95321176	95481390	STRG.36174.6	-	95321176,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95381684,95383984,95384237,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95437489,95441125,95472729	95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95381799,95384114,95384285,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95437555,95441180,95481390	0.875000
right_lobe_of_liver2_female_adult_53_years	chr11	321237	321258	321237	-	High_confidence	3	4	13	0.534568	3.418296	chr11	321227	321340	SINE|Alu|AluY	+	chr11	319668	321050	IFITM3|ENST00000399808.4	-	319668,320564	319990,321050	0.923077
right_lobe_of_liver2_female_adult_53_years	chr21	38959445	38959446	38959445	+	High_confidence	131	132	187	7.689549	6.384607	chr21	38959250	38959684	LTR|ERVL-MaLR|MLT1C	+	chr21	38959453	38961268	STRG.58115.1	+	38959453,38961157	38960893,38961268	0.957219
right_lobe_of_liver2_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	92	92	94	3.865335	4.308959	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.968085
right_lobe_of_liver2_female_adult_53_years	chr18	7946928	7946938	7946928	+	High_confidence	3	5	12	0.493447	3.027169	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.666667
right_lobe_of_liver2_female_adult_53_years	chr3	114872762	114872782	114872762	-	RAMPAGE_only	19	21	56	2.302753	5.266656	chr3	114872710	114872811	SINE|MIR|MIRb	-	chr3	114338652	114900622	STRG.13235.1	-	114338652,114350273,114380216,114380776,114383615,114389004,114500351,114693527,114710267,114713975,114801100,114900303,114900598	114339426,114351878,114380404,114380940,114383746,114389105,114500391,114693575,114710313,114714015,114801174,114900342,114900622	0.517857
right_lobe_of_liver2_female_adult_53_years	chr3	179740110	179740146	179740129	+	RAMPAGE_only	5	5	19	0.781291	4.058814	chr3	179740114	179740200	SINE|MIR|MIRc	+	chr3	179721563	179761151	USP13|ENST00000497155.1	+	179721563,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179761111	179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179761151	0.789474
right_lobe_of_liver2_female_adult_53_years	chr11	72135708	72135725	72135708	+	High_confidence	3	4	8	0.328965	2.521641	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	0.750000
right_lobe_of_liver2_female_adult_53_years	chr17	4497678	4497685	4497684	-	RAMPAGE_only	10	10	17	0.699050	2.952820	chr17	4497641	4497776	SINE|MIR|MIR3	+	chr17	4487584	4498708	STRG.50997.1	-	4487584,4489869,4497541,4498150	4487840,4489991,4497715,4498708	0.823529
right_lobe_of_liver2_female_adult_53_years	chr7	116811016	116811018	116811017	+	RAMPAGE_only	18	26	28	1.151376	3.994112	chr7	116810958	116811034	SINE|tRNA-RTE|MamSINE1	+	chr7	116835630	116840473	STRG.28052.1	+	116835630,116838595	116835648,116840473	0.857143
right_lobe_of_liver2_female_adult_53_years	chr5	150137345	150137358	150137357	-	High_confidence	7	7	25	1.028015	4.142915	chr5	150137246	150137416	SINE|MIR|MIR3	+	chr5	150134856	150137437	PDGFRB|ENST00000517957.1	-	150134856,150135554,150137007,150137399	150135016,150135878,150137053,150137437	0.680000
right_lobe_of_liver2_female_adult_53_years	chr4	94562560	94562591	94562590	+	RAMPAGE_only	8	9	26	1.069135	3.661226	chr4	94562452	94562686	DNA|hAT-Charlie|Charlie10	+	chr4	94489034	94575938	PDLIM5|ENST00000510099.5	+	94489034,94523723,94573350,94575615	94489070,94523875,94573393,94575938	0.692308
right_lobe_of_liver2_female_adult_53_years	chr1	33021373	33021456	33021455	-	RAMPAGE_only	49	50	84	3.454129	4.973875	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.988095
right_lobe_of_liver2_female_adult_53_years	chr5	32403116	32403117	32403116	-	RAMPAGE_only	14	16	19	0.781291	3.836592	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.947368
right_lobe_of_liver2_female_adult_53_years	chr14	102947730	102947755	102947730	-	RAMPAGE_only	3	5	12	0.493447	3.584963	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.750000
right_lobe_of_liver2_female_adult_53_years	chr3	4782339	4782359	4782358	+	High_confidence	4	5	11	0.452326	2.921928	chr3	4782402	4782508	DNA|hAT-Charlie|MER117	+	chr3	4782339	4788458	ITPR1|ENST00000481415.2	+	4782339,4783815,4787946	4782741,4783920,4788458	0.909091
right_lobe_of_liver2_female_adult_53_years	chr3	124901364	124901377	124901376	-	High_confidence	14	15	40	1.644823	4.879506	chr3	124901109	124901410	SINE|Alu|AluSz	+	chr3	124841420	124901418	ITGB5|ENST00000608657.5	-	124841420,124848308,124859241,124873445,124901265	124841551,124848558,124859446,124873531,124901418	0.600000
right_lobe_of_liver2_female_adult_53_years	chr2	101998960	101998978	101998960	+	High_confidence	17	19	49	2.014909	4.822156	chr2	101998446	101999045	LTR|ERVL-MaLR|MLT1H1	-	chr2	101998961	102028423	IL1R2|NR_048564.1	+	101998961,102008514,102009561,102015870,102019637,102022186,102024532,102026110,102028225	101999116,102008642,102009826,102016051,102019812,102022249,102024668,102026253,102028423	0.897959
right_lobe_of_liver2_female_adult_53_years	chr7	105677218	105677244	105677243	-	High_confidence	4	6	15	0.616809	3.521641	chr7	105677243	105677382	SINE|MIR|MIRb	+	chr7	105613473	105678018	ATXN7L1|ENST00000474433.5	-	105613473,105620199,105624074,105638352,105639486,105642837,105649406,105665065,105677945	105614816,105620321,105624267,105638609,105639569,105643121,105649560,105665288,105678018	0.933333
right_lobe_of_liver2_female_adult_53_years	chr20	45944694	45944697	45944694	+	RAMPAGE_only	4	4	8	0.328965	2.500000	chr20	45944573	45944829	SINE|MIR|MIRb	-	chr20	45934677	45948023	PCIF1|NM_022104.3	+	45934677,45937417,45938980,45939214,45940474,45940808,45941052,45943096,45943339,45943665,45944867,45945710,45946028,45946199,45947072,45947262,45947523	45934804,45937585,45939123,45939339,45940612,45940939,45941207,45943244,45943423,45943765,45945030,45945883,45946115,45946384,45947166,45947438,45948023	0.750000
right_lobe_of_liver2_female_adult_53_years	chr16	74485813	74485814	74485813	-	RAMPAGE_only	6	6	8	0.328965	2.521641	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	0.875000
right_lobe_of_liver2_female_adult_53_years	chr10	68307085	68307115	68307107	-	High_confidence	10	11	50	2.056029	3.437461	chr10	68307029	68307329	SINE|Alu|AluSx1	-	chr10	68287026	68306879	PBLD|ENST00000277795.8	-	68287026,68292009,68292128,68296885,68306760	68289019,68292039,68292238,68296985,68306879	0.960000
right_lobe_of_liver2_female_adult_53_years	chr11	58940285	58940343	58940311	+	High_confidence	22	22	106	4.358782	5.772522	chr11	58939816	58940740	LTR|ERV1|LOR1-int	+	chr11	58939483	58954821	GLYATL1|ENST00000532726.5	+	58939483,58943542,58947045,58947857,58954769	58939650,58943666,58947165,58947965,58954821	0.622642
right_lobe_of_liver2_female_adult_53_years	chr2	218645204	218645218	218645217	-	RAMPAGE_only	3	4	11	0.452326	3.277613	chr2	218645106	218645348	SINE|MIR|MIR	-	chr2	218638144	218659476	STRG.10774.3	-	218638144,218640663,218642027,218646170,218648634,218650358,218651700,218656149,218658700,218658979,218659368	218638808,218640769,218645064,218646348,218649459,218650526,218652300,218656463,218658876,218659130,218659476	1.000000
right_lobe_of_liver2_female_adult_53_years	chr4	186265459	186265476	186265475	+	High_confidence	7	7	19	0.781291	4.142664	chr4	186265210	186265540	SINE|Alu|AluSx3	+	chr4	186265944	186288780	F11|ENST00000403665.6	+	186265944,186267135,186271608,186273070,186274115,186275786,186276230,186280011,186280222,186280473,186284091,186285637,186286414,186287683,186288452	186266295,186267191,186271771,186273177,186274275,186275896,186276390,186280121,186280385,186280580,186284260,186285813,186286510,186287823,186288780	0.684211
right_lobe_of_liver2_female_adult_53_years	chr1	171251831	171251850	171251849	-	High_confidence	3	3	6	0.246724	2.584963	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171247579	171251794	AL445673.1|ENST00000455124.2	-	171247579,171251522	171247723,171251794	0.666667
right_lobe_of_liver2_female_adult_53_years	chr4	73383584	73383600	73383599	+	RAMPAGE_only	3	3	6	0.246724	2.584963	chr4	73382825	73383876	LINE|L1|L1MC1	-	chr4	73397113	73409457	ALB|ENST00000441319.5	+	73397113,73404368,73405115,73406628,73408593,73409354	73397160,73404406,73405173,73406761,73408805,73409457	0.833333
right_lobe_of_liver2_female_adult_53_years	chr5	95852231	95852232	95852231	+	High_confidence	279	279	291	11.966090	4.366425	chr5	95850982	95852649	LTR|ERV1|LTR12C	+	chr5	95852231	95860133	LINC01554|ENST00000436592.5	+	95852231,95852791,95856877,95858803	95852714,95852926,95856981,95860133	0.955326
right_lobe_of_liver2_female_adult_53_years	chr3	197299300	197299320	197299316	-	High_confidence	7	7	21	0.863532	3.916127	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.857143
right_lobe_of_liver2_female_adult_53_years	chr3	58534423	58534452	58534423	-	High_confidence	2	2	8	0.328965	2.500000	chr3	58534331	58534399	SINE|tRNA-RTE|MamSINE1	-	chr3	58531320	58534979	ACOX2|ENST00000492530.1	-	58531320,58531692,58533444,58533993,58534489,58534946	58531366,58531812,58533552,58534145,58534608,58534979	1.000000
right_lobe_of_liver2_female_adult_53_years	chr5	177355863	177355870	177355869	-	RAMPAGE_only	5	5	9	0.370085	2.947703	chr5	177355706	177356068	LTR|ERVL-MaLR|MLT1J2	-	chr5	177331561	177351884	LMAN2|NM_006816.2	-	177331561,177334283,177337135,177337362,177337705,177338487,177351172,177351451	177332246,177334403,177337250,177337524,177337785,177338605,177351291,177351884	1.000000
right_lobe_of_liver2_female_adult_53_years	chr7	101217578	101217595	101217578	-	High_confidence	12	12	39	1.603703	4.864727	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.948718
right_lobe_of_liver2_female_adult_53_years	chr7	138565704	138565705	138565704	-	High_confidence	29	29	29	1.192497	4.513153	chr7	138565604	138566149	LTR|ERV1|LTR4	-	chr7	138558455	138565684	STRG.28350.1	-	138558455,138565387	138559775,138565684	0.586207
right_lobe_of_liver2_female_adult_53_years	chr1	23838613	23838653	23838643	-	High_confidence	7	8	26	1.069135	4.213661	chr1	23837780	23838651	LTR|ERV1|LTR1A2	+	chr1	23801886	23838620	HMGCL|ENST00000374487.6	-	23801886,23804399,23808134,23810735,23814189,23816674,23817475,23820509,23826083,23838063	23802564,23804525,23808323,23810799,23814338,23816770,23817583,23820593,23826183,23838620	0.961538
right_lobe_of_liver2_female_adult_53_years	chr6	63532364	63532397	63532368	+	RAMPAGE_only	4	4	16	0.657929	3.155639	chr6	63532336	63532764	DNA|hAT-Tip100|Arthur1B	-	chr6	63521760	63576582	PTP4A1|ENST00000470661.1	+	63521760,63527818,63576435	63521826,63528084,63576582	0.812500
right_lobe_of_liver2_female_adult_53_years	chr6	31587007	31587014	31587007	+	High_confidence	4	4	13	0.534568	3.392747	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.846154
right_lobe_of_liver2_female_adult_53_years	chr12	18149175	18149193	18149175	-	RAMPAGE_only	8	8	25	1.028015	3.918296	chr12	18149117	18149291	LTR|ERVL-MaLR|MLT1I	+	chr12	18081363	18320107	RERGL|ENST00000541632.1	-	18081363,18084516,18085619,18088899,18140791,18143183,18285304,18320055	18081473,18084665,18085693,18088956,18140873,18143293,18285401,18320107	0.720000
right_lobe_of_liver2_female_adult_53_years	chr9	129489063	129489126	129489125	+	High_confidence	26	34	102	4.194300	5.995763	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.813725
right_lobe_of_liver2_female_adult_53_years	chr7	95377591	95377671	95377591	-	RAMPAGE_only	13	17	46	1.891547	4.507743	chr7	95376777	95379224	LINE|L1|L1P2	+	chr7	95359943	95396361	PON3|ENST00000265627.9	-	95359943,95362361,95362759,95363862,95367361,95372172,95390153,95394643,95396276	95360131,95362490,95362841,95364063,95367488,95372338,95390209,95394714,95396361	0.934783
right_lobe_of_liver2_female_adult_53_years	chr17	7115349	7115374	7115373	-	High_confidence	4	4	12	0.493447	3.418296	chr17	7115360	7115529	SINE|MIR|MIR	-	chr17	7107838	7115700	ASGR2|ENST00000574868.1	-	7107838,7108461,7108771,7114116,7114614,7115053,7115640	7107907,7108557,7108888,7114310,7114811,7115522,7115700	1.000000
right_lobe_of_liver2_female_adult_53_years	chr9	20658338	20658339	20658338	+	High_confidence	5	5	7	0.287844	2.521641	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.714286
right_lobe_of_liver2_female_adult_53_years	chr14	94657907	94657908	94657907	-	RAMPAGE_only	92	100	100	4.112059	5.537173	chr14	94657425	94658900	Retroposon|SVA|SVA_C	+	chr14	94378375	94390693	SERPINA1|ENST00000393088.8	-	94378375,94379463,94380870,94382591,94388559,94388800,94390456	94378640,94379611,94381141,94383241,94388663,94389010,94390693	1.000000
right_lobe_of_liver2_female_adult_53_years	chr16	2757779	2757814	2757813	+	High_confidence	5	6	19	0.781291	3.725481	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.947368
right_lobe_of_liver2_female_adult_53_years	chr19	10916719	10916764	10916763	+	RAMPAGE_only	2	2	8	0.328965	2.807355	chr19	10916771	10916976	SINE|MIR|MIR	+	chr19	10918985	10920870	CARM1|ENST00000586508.1	+	10918985,10919876,10920435,10920658,10920833	10919680,10919966,10920573,10920748,10920870	0.625000
right_lobe_of_liver2_female_adult_53_years	chr22	26532705	26532706	26532705	-	RAMPAGE_only	16	16	20	0.822412	3.826875	chr22	26532568	26532679	SINE|MIR|MIR3	-	chr22	26521982	26540871	STRG.58608.2	-	26521982,26522351,26528213,26532694,26536287,26540788	26522305,26526267,26528262,26532745,26536486,26540871	0.950000
right_lobe_of_liver2_female_adult_53_years	chr4	4269605	4269614	4269613	-	High_confidence	9	10	31	1.274738	2.948364	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.967742
right_lobe_of_liver2_female_adult_53_years	chr15	89196469	89196470	89196469	+	RAMPAGE_only	210	215	287	11.801608	4.123640	chr15	89196302	89196472	SINE|MIR|MIR3	+	chr15	89088149	89202360	ABHD2|NM_007011.7	+	89088149,89090282,89102499,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89202360	0.996516
right_lobe_of_liver2_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	9	9	11	0.452326	2.921928	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.818182
right_lobe_of_liver2_female_adult_53_years	chr13	80075002	80075027	80075002	-	High_confidence	5	5	13	0.534568	3.084963	chr13	80074227	80075072	LTR|ERV1|LTR1A2	+	chr13	80070279	80075027	STRG.44141.1	-	80070279,80072637,80073388,80074478	80070437,80072750,80073523,80075027	0.846154
right_lobe_of_liver2_female_adult_53_years	chr7	76135426	76135452	76135448	-	High_confidence	23	24	96	3.947576	5.796951	chr7	76135264	76135657	LTR|ERVL|LTR40b	+	chr7	76071468	76135521	STRG.26820.1	-	76071468,76077105,76084328,76084806,76088063,76092062,76093296,76099439,76099897,76100908,76103812,76108230,76108434,76117722,76128619,76131987,76134208,76135218	76075318,76077295,76084418,76084953,76088216,76092166,76093401,76099514,76099956,76101414,76104275,76108309,76108762,76117886,76128782,76132176,76134403,76135521	0.895833
right_lobe_of_liver2_female_adult_53_years	chr1	155478035	155478044	155478043	-	RAMPAGE_only	4	5	9	0.370085	2.750000	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.888889
right_lobe_of_liver2_female_adult_53_years	chr3	28347630	28347654	28347653	-	High_confidence	3	3	9	0.370085	2.750000	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.666667
right_lobe_of_liver2_female_adult_53_years	chr5	997302	997319	997318	-	High_confidence	7	7	30	1.233618	4.418157	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.966667
right_lobe_of_liver2_female_adult_53_years	chr6	88662660	88662678	88662677	+	High_confidence	3	3	7	0.287844	2.521641	chr6	88662592	88670501	LTR|ERV1|HERVE-int	+	chr6	88662467	88670909	STRG.23591.1	+	88662467,88664476	88662858,88670909	1.000000
right_lobe_of_liver2_female_adult_53_years	chr10	80344732	80344733	80344732	+	High_confidence	19	19	20	0.822412	3.892407	chr10	80344537	80344891	LTR|ERVL-MaLR|THE1A	+	chr10	80344744	80368073	DYDC2|NR_070308.1	+	80344744,80352436,80356259,80362434,80362950,80366687	80344815,80352617,80356596,80362590,80363073,80368073	0.750000
right_lobe_of_liver2_female_adult_53_years	chr1	147173260	147173261	147173260	+	High_confidence	5	5	7	0.287844	2.807355	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	1.000000
right_lobe_of_liver2_female_adult_53_years	chr18	8376199	8376200	8376199	+	RAMPAGE_only	12	12	12	0.493447	3.584963	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8370932	8379313	PTPRM|ENST00000583153.2	+	8370932,8371759,8376045,8376461,8378264,8379166	8371006,8371810,8376200,8376597,8378414,8379313	0.833333
right_lobe_of_liver2_female_adult_53_years	chr15	30624362	30624374	30624373	+	High_confidence	4	4	10	0.411206	2.521928	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.900000
right_lobe_of_liver2_female_adult_53_years	chr14	73610937	73610938	73610937	+	High_confidence	16	17	17	0.699050	3.852169	chr14	73610703	73611149	LTR|ERVL|MER70A	+	chr14	73610944	73619721	ACOT6|ENST00000554229.1	+	73610944,73611515,73616989,73619233	73611041,73611597,73617192,73619721	0.529412
right_lobe_of_liver2_female_adult_53_years	chr7	101308269	101308325	101308324	+	High_confidence	20	26	117	4.811108	6.017602	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.888889
right_lobe_of_liver2_female_adult_53_years	chr6	113873326	113873347	113873339	-	High_confidence	41	43	231	9.498855	5.257309	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.887446
right_lobe_of_liver2_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	8	8	8	0.328965	2.750000	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
right_lobe_of_liver2_female_adult_53_years	chr10	31808656	31808673	31808656	-	High_confidence	4	4	8	0.328965	3.000000	chr10	31808386	31808622	SINE|MIR|MIRb	-	chr10	31806290	31808551	ARHGAP12|ENST00000497085.1	-	31806290,31808452	31807832,31808551	1.000000
right_lobe_of_liver2_female_adult_53_years	chr19	45524130	45524141	45524130	+	RAMPAGE_only	4	4	11	0.452326	3.095795	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.545455
right_lobe_of_liver2_female_adult_53_years	chr4	85778503	85778532	85778503	+	High_confidence	7	7	20	0.822412	3.576618	chr4	85778413	85778594	SINE|MIR|MIR3	+	chr4	85778697	86002670	ARHGAP24|NM_001042669.1	+	85778697,85923647,85942065,85972035,85974887,85977569,85994582,86000478	85778965,85923770,85942273,85972168,85974961,85977691,85995657,86002670	0.900000
right_lobe_of_liver2_female_adult_53_years	chr11	1687374	1687379	1687378	-	RAMPAGE_only	6	7	11	0.452326	3.321928	chr11	1687144	1687559	LINE|L1|L1MB3	-	chr11	1683268	1685629	FAM99B|ENST00000382166.2	-	1683268,1684193,1685437	1684034,1684302,1685629	0.727273
right_lobe_of_liver2_female_adult_53_years	chr2	236803017	236803070	236803050	-	RAMPAGE_only	34	34	120	4.934470	5.978770	chr2	236802828	236803130	LTR|ERVL-MaLR|MLT1I	-	chr2	236797783	236798076	STRG.11095.1	-	236797783	236798076	0.716667
right_lobe_of_liver2_female_adult_53_years	chr17	41871818	41871833	41871818	-	RAMPAGE_only	2	3	10	0.411206	2.521928	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	1.000000
right_lobe_of_liver2_female_adult_53_years	chr21	39082786	39082804	39082786	-	RAMPAGE_only	10	10	22	0.904653	4.004886	chr21	39082579	39082775	SINE|MIR|MIRc	-	chr21	39076520	39078504	STRG.58150.1	-	39076520	39078504	0.500000
right_lobe_of_liver2_female_adult_53_years	chr16	75318116	75318117	75318116	-	RAMPAGE_only	12	13	16	0.657929	3.640224	chr16	75317828	75318154	SINE|Alu|AluSx	+	chr16	75293697	75306545	CFDP1|ENST00000570103.5	-	75293697,75305023,75306386	75294042,75305182,75306545	0.937500
right_lobe_of_liver2_female_adult_53_years	chr8	18170398	18170472	18170461	+	High_confidence	13	14	82	3.371888	5.694570	chr8	18170361	18170677	LTR|ERV1|MER57C1	+	chr8	18170461	18223689	NAT1|NM_001291962.1	+	18170461,18170678,18209780,18216876,18219410,18222041	18170507,18170739,18209955,18216994,18219489,18223689	0.670732
right_lobe_of_liver2_female_adult_53_years	chr8	26366346	26366396	26366395	+	RAMPAGE_only	7	7	30	1.233618	3.734849	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	1.000000
right_lobe_of_liver2_female_adult_53_years	chr4	73343576	73343628	73343576	+	High_confidence	20	21	95	3.906456	5.278610	chr4	73343412	73343766	LTR|ERVL|LTR33	-	chr4	73343412	73353718	STRG.16007.1	+	73343412,73349771,73353343	73343686,73349896,73353718	0.736842
right_lobe_of_liver2_female_adult_53_years	chrX	53220846	53220871	53220847	-	RAMPAGE_only	11	13	23	0.945773	4.011365	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	0.913043
right_lobe_of_liver2_female_adult_53_years	chr12	51773663	51773683	51773663	+	RAMPAGE_only	5	6	24	0.986894	4.175736	chr12	51773509	51773813	LINE|L1|L1MB8	+	chr12	51768971	51794625	STRG.41777.1	+	51768971,51769867,51770528,51774188,51780201,51786541,51788694,51789280,51790397,51794370	51769335,51769985,51770683,51774362,51780271,51786826,51788748,51789418,51790502,51794625	0.875000
right_lobe_of_liver2_female_adult_53_years	chr2	187529439	187529459	187529441	-	RAMPAGE_only	7	10	21	0.863532	3.787144	chr2	187529293	187529670	LTR|ERVL-MaLR|MLT1B	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.761905
right_lobe_of_liver2_female_adult_53_years	chr18	36807869	36807870	36807869	-	High_confidence	15	15	22	0.904653	4.297079	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.727273
right_lobe_of_liver2_female_adult_53_years	chr4	159317436	159317455	159317454	+	RAMPAGE_only	4	4	12	0.493447	2.845351	chr4	159317277	159317499	LINE|L2|L2a	-	chr4	159326660	159330653	RAPGEF2|ENST00000513816.1	+	159326660,159330333	159330010,159330653	0.500000
right_lobe_of_liver2_female_adult_53_years	chr1	200411683	200411814	200411799	+	High_confidence	380	388	648	26.646139	6.330496	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411799	200475513	AC104461.1|ENST00000634596.1	+	200411799,200473908	200411962,200475513	0.770062
right_lobe_of_liver2_female_adult_53_years	chr4	109532728	109532731	109532728	+	RAMPAGE_only	4	5	9	0.370085	2.725481	chr4	109532709	109532882	LTR|ERVL|LTR41B	-	chr4	109433814	109540896	SEC24B|ENST00000265175.5	+	109433814,109462900,109473003,109481676,109491326,109494614,109506327,109510008,109511956,109513746,109516527,109520365,109521116,109521419,109524817,109525345,109526225,109527321,109530288,109531384,109532638,109533592,109538492,109539560	109434002,109463644,109473186,109481781,109491407,109494856,109506512,109510111,109512083,109513856,109516640,109520484,109521172,109521626,109524941,109525504,109526399,109527432,109530464,109531522,109532743,109533685,109538596,109540896	1.000000
right_lobe_of_liver2_female_adult_53_years	chr8	94929098	94929162	94929124	-	RAMPAGE_only	28	30	87	3.577491	4.907497	chr8	94929079	94929133	SINE|tRNA-RTE|MamSINE1	-	chr8	94925971	94949366	TP53INP1|ENST00000448464.6	-	94925971,94932069,94939859,94940829,94949153	94930728,94932107,94940220,94941091,94949366	1.000000
right_lobe_of_liver2_female_adult_53_years	chr10	35352702	35352738	35352737	+	RAMPAGE_only	329	330	563	23.150890	5.878022	chr10	35352603	35352744	LINE|L2|L2c	-	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.960924
right_lobe_of_liver2_female_adult_53_years	chr9	121326235	121326236	121326235	+	High_confidence	11	12	14	0.575688	2.950212	chr9	121325898	121326350	LTR|ERVL|LTR86A1	-	chr9	121326581	121332662	GSN|ENST00000373806.1	+	121326581,121327307,121328890,121329237,121331387,121332433	121326792,121327482,121329015,121329315,121331448,121332662	0.642857
right_lobe_of_liver2_female_adult_53_years	chr11	58578102	58578133	58578102	-	High_confidence	22	24	57	2.343873	5.042647	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.736842
right_lobe_of_liver2_female_adult_53_years	chr16	87384807	87384819	87384818	-	RAMPAGE_only	4	4	9	0.370085	3.000000	chr16	87384638	87384881	SINE|Alu|AluJr	+	chr16	87326986	87383793	FBXO31|NM_024735.4	-	87326986,87333885,87335303,87336154,87342876,87343597,87347173,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87360366,87383793	0.555556
right_lobe_of_liver2_female_adult_53_years	chr9	108885871	108885872	108885871	-	RAMPAGE_only	11	11	11	0.452326	3.027169	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108879460	108889684	ELP1|ENST00000467959.1	-	108879460,108880051,108881704,108882124,108889331,108889644	108879557,108880165,108881765,108882187,108889393,108889684	0.636364
right_lobe_of_liver2_female_adult_53_years	chr15	89133430	89133457	89133449	+	RAMPAGE_only	3	3	10	0.411206	3.121928	chr15	89133190	89133834	LINE|L1|L1MC5	-	chr15	89116503	89183373	ABHD2|ENST00000562073.1	+	89116503,89151676,89155366,89175811,89183331	89116521,89151852,89155534,89175995,89183373	1.000000
right_lobe_of_liver2_female_adult_53_years	chr9	19126400	19126425	19126424	-	RAMPAGE_only	39	67	145	5.962485	6.300948	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19115769	19127475	STRG.31856.3	-	19115769,19118320,19119649,19120879,19123564,19126113,19126396,19127418	19116649,19118455,19119831,19121165,19123647,19126245,19126448,19127475	0.972414
right_lobe_of_liver2_female_adult_53_years	chr3	22105678	22105680	22105678	-	High_confidence	26	36	45	1.850426	4.924969	chr3	22105437	22105885	LTR|ERVL|MLT2B1	-	chr3	22104918	22105716	STRG.11819.1	-	22104918	22105716	0.777778
right_lobe_of_liver2_female_adult_53_years	chr3	129724020	129724117	129724116	-	High_confidence	28	29	88	3.618612	5.040076	chr3	129724100	129724190	LINE|CR1|L3	+	chr3	129647795	129724277	STRG.13488.7	-	129647795,129654967,129670329,129723963	129651795,129655103,129671264,129724277	0.954545
right_lobe_of_liver2_female_adult_53_years	chr1	161206444	161206580	161206444	+	RAMPAGE_only	6	8	80	3.289647	5.759184	chr1	161206361	161206444	SINE|tRNA|LFSINE_Vert	+	chr1	161209238	161214239	NDUFS2|ENST00000483804.5	+	161209238,161209482,161209856,161210110,161210303,161210590,161212350,161212591,161213379,161213648,161213863,161214155	161209313,161209595,161209931,161210188,161210389,161210710,161212480,161212654,161213475,161213732,161213921,161214239	0.950000
right_lobe_of_liver2_female_adult_53_years	chr4	48805306	48805321	48805320	+	High_confidence	5	5	9	0.370085	3.169925	chr4	48805071	48805471	LTR|ERVL-MaLR|MLT1F	+	chr4	48805211	48850036	OCIAD1|ENST00000504654.5	+	48805211,48830576,48832619,48833400,48842635,48848398,48849946	48805330,48830673,48832682,48833481,48842689,48848446,48850036	0.666667
right_lobe_of_liver2_female_adult_53_years	chr3	28291847	28291848	28291847	+	High_confidence	16	16	16	0.657929	3.452820	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.812500
right_lobe_of_liver2_female_adult_53_years	chr10	45000263	45000292	45000291	+	High_confidence	19	24	103	4.235420	5.597623	chr10	45000000	45000445	LINE|L2|L2	-	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.718447
right_lobe_of_liver2_female_adult_53_years	chr10	27509927	27509928	27509927	+	RAMPAGE_only	7	7	7	0.287844	2.807355	chr10	27509948	27510212	LINE|L2|L2c	+	chr10	27504618	27537966	RAB18|ENST00000423465.1	+	27504618,27504978,27509874,27526827,27531528,27532506,27533734,27533927,27537875	27504724,27505190,27509930,27526889,27531615,27532579,27533853,27533994,27537966	0.571429
right_lobe_of_liver2_female_adult_53_years	chr17	1659361	1659368	1659367	-	RAMPAGE_only	3	3	7	0.287844	2.807355	chr17	1659014	1659325	SINE|Alu|AluSx3	-	chr17	1650630	1684837	PRPF8|ENST00000572621.5	-	1650630,1651107,1651413,1651647,1653541,1653776,1655349,1656391,1656647,1658252,1658525,1659356,1659840,1660431,1660697,1660992,1661270,1661610,1661905,1673080,1673356,1673745,1674441,1675151,1675619,1675927,1676206,1676504,1676975,1677564,1678517,1678761,1679016,1679290,1679608,1680725,1680928,1681477,1681819,1682128,1683532,1684471	1650956,1651310,1651553,1651788,1653683,1654016,1655543,1656565,1656761,1658381,1658763,1659548,1660001,1660578,1660827,1661162,1661406,1661790,1662153,1673197,1673567,1673892,1674680,1675339,1675812,1676054,1676370,1676711,1677172,1677694,1678652,1678881,1679206,1679410,1679799,1680831,1681054,1681690,1682038,1682293,1683701,1684837	1.000000
right_lobe_of_liver2_female_adult_53_years	chr6	79631242	79631329	79631302	+	High_confidence	850	855	2651	109.010672	6.914703	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.989061
right_lobe_of_liver2_female_adult_53_years	chr16	29963558	29963578	29963558	+	High_confidence	2	2	10	0.411206	3.121928	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.700000
right_lobe_of_liver2_female_adult_53_years	chr11	9993966	9993969	9993966	-	High_confidence	6	6	10	0.411206	3.169925	chr11	9993915	9994007	DNA|hAT-Ac|OldhAT1	+	chr11	9853706	9993104	SBF2|ENST00000420722.2	-	9853706,9856457,9858225,9895942,9961956,9963772,9968340,9989496,9992989	9853712,9856720,9858396,9896011,9962106,9963882,9968545,9989595,9993104	0.700000
right_lobe_of_liver2_female_adult_53_years	chr11	116830114	116830149	116830144	+	High_confidence	2	2	9	0.370085	2.725481	chr11	116830038	116830173	SINE|MIR|MIR3	-	chr11	116829921	116831100	APOC3|ENST00000470144.1	+	116829921,116830569,116830772,116831042	116829940,116830637,116830896,116831100	0.777778
right_lobe_of_liver2_female_adult_53_years	chr8	11864418	11864460	11864444	-	RAMPAGE_only	5	5	27	1.110256	4.209867	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.925926
right_lobe_of_liver2_female_adult_53_years	chr3	12648863	12648880	12648863	-	RAMPAGE_only	2	2	12	0.493447	3.095795	chr3	12648832	12649142	SINE|Alu|AluSp	+	chr3	12584332	12664125	RAF1|ENST00000423275.5	-	12584332,12584846,12585121,12585680,12587590,12590797,12591707,12599690,12600151,12600387,12604135,12606200,12608765,12609232,12618514,12663812	12584657,12584981,12585253,12585799,12587637,12590974,12591792,12599808,12600279,12600415,12604289,12606299,12608923,12609335,12618747,12664125	0.500000
right_lobe_of_liver2_female_adult_53_years	chr3	48979494	48979550	48979494	+	RAMPAGE_only	8	8	33	1.356979	4.452820	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.939394
right_lobe_of_liver2_female_adult_53_years	chr9	129493444	129493452	129493444	+	High_confidence	2	2	6	0.246724	2.584963	chr9	129493238	129493460	SINE|MIR|MIR	+	chr9	129493576	129513683	LINC00963|ENST00000623185.3	+	129493576,129503322,129504891,129513418	129493595,129503672,129505043,129513683	0.666667
right_lobe_of_liver2_female_adult_53_years	chr8	30099903	30099906	30099903	+	RAMPAGE_only	6	6	12	0.493447	2.792481	chr8	30099784	30099958	LINE|L2|L2b	-	chr8	30101939	30105087	LEPROTL1|ENST00000519466.1	+	30101939,30104299,30104733	30101973,30104486,30105087	0.833333
right_lobe_of_liver2_female_adult_53_years	chr3	129559620	129559621	129559620	-	High_confidence	7	7	8	0.328965	2.807355	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	0.875000
right_lobe_of_liver2_female_adult_53_years	chr19	58312328	58312374	58312373	+	RAMPAGE_only	4	4	9	0.370085	3.169925	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	1.000000
right_lobe_of_liver2_female_adult_53_years	chr12	111791819	111791862	111791861	+	High_confidence	20	20	53	2.179391	4.368692	chr12	111791747	111791914	SINE|Alu|AluJb	+	chr12	111792610	111809670	ALDH2|ENST00000549106.1	+	111792610,111798077,111803858,111809542	111792782,111798242,111803973,111809670	0.867925
right_lobe_of_liver2_female_adult_53_years	chr18	58445678	58445713	58445701	-	High_confidence	18	18	49	2.014909	4.670533	chr18	58445651	58445765	LINE|L2|L2c	+	chr18	58445055	58445703	STRG.54055.1	-	58445055	58445703	0.959184
right_lobe_of_liver2_female_adult_53_years	chr5	172896710	172896756	172896710	+	RAMPAGE_only	8	9	37	1.521462	4.707715	chr5	172896579	172896710	DNA|hAT-Charlie|Charlie8	-	chr5	172906059	172926563	ERGIC1|ENST00000519567.5	+	172906059,172909666,172914713,172924004,172926508	172906180,172909761,172914838,172924109,172926563	0.621622
right_lobe_of_liver2_female_adult_53_years	chr11	17282857	17282905	17282904	+	RAMPAGE_only	3	4	12	0.493447	3.277613	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.833333
right_lobe_of_liver2_female_adult_53_years	chr3	182895878	182895896	182895895	-	High_confidence	4	5	13	0.534568	3.392747	chr3	182895589	182896029	LTR|ERV1|LTR46	-	chr3	182895192	182895943	STRG.14376.1	-	182895192	182895943	0.846154
right_lobe_of_liver2_female_adult_53_years	chr11	72758533	72758595	72758533	-	High_confidence	17	20	109	4.482144	4.605053	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72759309	STARD10|ENST00000537351.5	-	72754728,72755121,72755700,72757766,72758529,72759233	72754782,72755142,72755753,72757884,72758633,72759309	0.669725
right_lobe_of_liver2_female_adult_53_years	chr11	114295318	114295370	114295336	+	High_confidence	20	36	106	4.358782	5.555612	chr11	114294850	114295386	LTR|ERV1|LTR35A	-	chr11	114295812	114312516	NNMT|NM_006169.2	+	114295812,114297950,114312044	114296710,114298158,114312516	0.839623
right_lobe_of_liver2_female_adult_53_years	chr1	53190505	53190556	53190555	+	RAMPAGE_only	3	3	11	0.452326	2.921928	chr1	53190474	53190562	DNA|hAT-Charlie|Charlie16a	+	chr1	53182535	53192495	STRG.1305.1	+	53182535,53191050,53191291,53192406	53182627,53191196,53191466,53192495	0.818182
right_lobe_of_liver2_female_adult_53_years	chr16	15006394	15006427	15006394	+	RAMPAGE_only	74	75	113	4.646626	5.255383	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.743363
right_lobe_of_liver2_female_adult_53_years	chr4	103425074	103425075	103425074	+	High_confidence	65	72	94	3.865335	4.596236	chr4	103424943	103425102	LTR|Gypsy|LTR81B	+	chr4	103425056	103453753	STRG.16408.2	+	103425056,103436934,103453599	103425185,103437046,103453753	0.904255
right_lobe_of_liver2_female_adult_53_years	chr7	11194708	11194730	11194708	+	High_confidence	62	70	163	6.702655	5.767735	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11194713	11249585	STRG.25583.1	+	11194713,11197309,11244257,11248292	11194784,11197444,11244479,11249585	0.539877
right_lobe_of_liver2_female_adult_53_years	chr19	49086546	49086547	49086546	+	High_confidence	5	6	6	0.246724	2.584963	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.666667
right_lobe_of_liver2_female_adult_53_years	chr10	5968998	5968999	5968998	-	RAMPAGE_only	4	4	7	0.287844	2.807355	chr10	5968507	5969013	LINE|L1|L1MCc	-	chr10	5953175	5977835	IL15RA|ENST00000397246.7	-	5953175,5956378,5959753,5960366,5966144,5968593,5968775,5977776	5953206,5956454,5959786,5960567,5966339,5968703,5968928,5977835	0.857143
right_lobe_of_liver2_female_adult_53_years	chr5	73078287	73078288	73078287	+	RAMPAGE_only	9	12	13	0.534568	3.251629	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.923077
right_lobe_of_liver2_female_adult_53_years	chr18	11905886	11905913	11905912	-	RAMPAGE_only	2	3	7	0.287844	2.584963	chr18	11905883	11905926	SINE|MIR|MIRc	+	chr18	11885759	11908273	MPPE1|ENST00000592977.5	-	11885759,11886498,11886712,11886916,11888668,11889386,11893467,11896983,11908200	11885816,11886621,11886778,11887025,11888743,11889490,11893576,11897356,11908273	0.857143
right_lobe_of_liver2_female_adult_53_years	chr2	159428356	159428357	159428356	-	RAMPAGE_only	4	5	7	0.287844	2.584963	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159398842	159422318	STRG.9029.8	-	159398842,159400598,159404848,159405021,159412334,159419779	159398894,159400664,159404910,159405114,159412545,159422318	0.714286
right_lobe_of_liver2_female_adult_53_years	chr11	73787447	73787480	73787479	+	High_confidence	4	4	12	0.493447	3.251629	chr11	73787272	73787558	SINE|Alu|AluSx1	+	chr11	73787315	73864611	MRPL48|ENST00000310614.11	+	73787315,73805026,73808312,73825707,73844806,73859906,73863171,73864295	73787992,73805079,73808350,73825796,73844976,73860009,73863261,73864611	1.000000
right_lobe_of_liver2_female_adult_53_years	chr11	17282811	17282824	17282821	+	RAMPAGE_only	8	8	16	0.657929	3.875000	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.937500
right_lobe_of_liver2_female_adult_53_years	chr4	186223013	186223024	186223013	+	RAMPAGE_only	2	3	6	0.246724	2.584963	chr4	186222869	186223238	LTR|ERVL-MaLR|THE1D	+	chr4	186226437	186236896	KLKB1|ENST00000428196.5	+	186226437,186227439,186228194,186232126,186233951,186236780	186226489,186227587,186228253,186232289,186234058,186236896	1.000000
right_lobe_of_liver2_female_adult_53_years	chr3	193614823	193614873	193614823	+	High_confidence	5	5	18	0.740171	3.007196	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.944444
right_lobe_of_liver2_female_adult_53_years	chr7	30594379	30594390	30594389	-	High_confidence	11	12	27	1.110256	4.403856	chr7	30594385	30594501	SINE|MIR|MIR3	+	chr7	30578069	30594758	GARS-DT|ENST00000582549.1	-	30578069,30579005,30579230,30584422,30584710,30585329,30594710	30578091,30579128,30579314,30584453,30584808,30585479,30594758	0.518519
right_lobe_of_liver2_female_adult_53_years	chr19	58306153	58306154	58306153	+	High_confidence	7	7	11	0.452326	2.721928	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58312462	ERVK3-1|ENST00000609864.5	+	58305376,58306087,58312020,58312165	58305445,58306216,58312061,58312462	0.545455
right_lobe_of_liver2_female_adult_53_years	chr4	37546560	37546561	37546560	+	RAMPAGE_only	7	7	9	0.370085	3.169925	chr4	37546188	37546669	LTR|ERV1|LTR2B	+	chr4	37584232	37591826	C4orf19|ENST00000284437.6	+	37584232,37588845,37590087	37584388,37588899,37591826	0.555556
right_lobe_of_liver2_female_adult_53_years	chr1	121511551	121511577	121511576	-	RAMPAGE_only	5	6	32	1.315859	4.415061	chr1	121510491	121511971	LTR|ERV1|HERV9N-int	+	chr1	121494378	121510383	AL592494.1|ENST00000437523.2	-	121494378,121509740,121510355	121494595,121509804,121510383	0.593750
right_lobe_of_liver2_female_adult_53_years	chr3	52805075	52805092	52805075	+	High_confidence	3	3	7	0.287844	2.521641	chr3	52804987	52805185	SINE|MIR|MIR	-	chr3	52804805	52808796	ITIH3|ENST00000493136.1	+	52804805,52806292,52806900,52807746,52808109,52808551	52806138,52806406,52807105,52807916,52808221,52808796	1.000000
right_lobe_of_liver2_female_adult_53_years	chr12	9124988	9124991	9124990	+	High_confidence	19	32	40	1.644823	4.365312	chr12	9124238	9125430	LTR|ERV1|MER52C	+	chr12	9124390	9126358	STRG.40742.1	+	9124390	9126358	0.975000
right_lobe_of_liver2_female_adult_53_years	chr17	4736361	4736404	4736361	-	High_confidence	5	7	30	1.233618	3.539572	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.966667
right_lobe_of_liver2_female_adult_53_years	chr12	120465638	120465651	120465645	-	High_confidence	6	6	17	0.699050	3.077820	chr12	120465539	120465607	SINE|MIR|MIRb	-	chr12	120461710	120464943	SRSF9|ENST00000548792.1	-	120461710,120463949	120462162,120464943	0.882353
right_lobe_of_liver2_female_adult_53_years	chr5	154409563	154409592	154409563	+	RAMPAGE_only	2	2	8	0.328965	2.500000	chr5	154409601	154409687	LINE|L1|L1PREC2	+	chr5	154403776	154419033	GALNT10|ENST00000517958.1	+	154403776,154409540,154412888,154415782,154416813	154404216,154409762,154413005,154415932,154419033	1.000000
right_lobe_of_liver2_female_adult_53_years	chr2	182928788	182928790	182928788	-	RAMPAGE_only	13	18	24	0.986894	3.879664	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.750000
right_lobe_of_liver2_female_adult_53_years	chr6	131635526	131635549	131635532	+	RAMPAGE_only	6	6	18	0.740171	3.725481	chr6	131635429	131635627	LTR|ERV1|PABL_B	+	chr6	131637234	131747410	ENPP3|NM_005021.4	+	131637234,131641454,131650026,131652541,131652830,131658322,131671247,131674161,131675079,131676735,131677867,131683053,131685363,131685875,131693496,131718671,131720291,131722226,131724039,131726045,131733587,131737354,131738030,131740223,131746785	131637462,131641530,131650149,131652667,131652891,131658420,131671327,131674281,131675189,131676801,131677940,131683162,131685495,131685907,131693624,131718738,131720379,131722405,131724091,131726200,131733723,131737432,131738163,131740380,131747410	0.611111
right_lobe_of_liver2_female_adult_53_years	chr17	1744331	1744340	1744339	+	RAMPAGE_only	7	7	18	0.740171	3.836592	chr17	1744211	1744513	SINE|Alu|AluSp	+	chr17	1743025	1755268	SERPINF2|ENST00000382061.4	+	1743025,1744991,1745174,1745332,1745707,1747018,1747308,1748597,1752585,1754121	1743076,1745058,1745213,1745395,1745909,1747162,1747512,1748740,1752790,1755268	0.722222
right_lobe_of_liver2_female_adult_53_years	chr11	2376259	2376294	2376259	+	High_confidence	18	18	61	2.508356	5.240706	chr11	2376100	2376285	DNA|hAT-Charlie|MER3	-	chr11	2376201	2397252	STRG.37137.1	+	2376201,2376820,2377041,2390411,2394094,2394971,2395415,2395868,2396627,2396803	2376357,2376920,2377615,2390526,2394192,2395046,2395520,2395970,2396714,2397252	0.901639
right_lobe_of_liver2_female_adult_53_years	chr2	199956003	199956020	199956003	+	High_confidence	2	2	8	0.328965	2.521641	chr2	199955996	199956125	LINE|L1|L1MDb	+	chr2	199955820	200008540	MAIP1|ENST00000435773.2	+	199955820,199959267,199959753,200005742,200008465	199956248,199959339,199959880,200005777,200008540	0.750000
right_lobe_of_liver2_female_adult_53_years	chr19	48868595	48868617	48868595	-	High_confidence	86	89	371	15.255737	7.130665	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.997305
right_lobe_of_liver2_female_adult_53_years	chr6	75891300	75891305	75891304	+	High_confidence	5	5	9	0.370085	2.947703	chr6	75891350	75891661	SINE|Alu|AluY	+	chr6	75891091	75916612	STRG.23267.4	+	75891091,75892529,75898372,75907604,75908495,75914062,75914812	75891306,75895260,75898411,75907708,75908627,75914281,75916612	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	212237683	212237721	212237720	-	RAMPAGE_only	5	5	15	0.616809	3.664498	chr1	212237552	212237916	LTR|ERVL-MaLR|MSTC	-	chr1	212225279	212238977	AL451060.1|ENST00000431307.1	-	212225279,212230202,212238906	212225513,212230259,212238977	0.866667
right_lobe_of_liver2_female_adult_53_years	chr6	127330835	127330860	127330835	-	High_confidence	4	4	15	0.616809	3.378783	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.866667
right_lobe_of_liver2_female_adult_53_years	chr13	80074324	80074386	80074324	+	High_confidence	13	14	41	1.685944	5.211211	chr13	80074227	80075072	LTR|ERV1|LTR1A2	+	chr13	80074332	80075682	STRG.44140.1	+	80074332	80075682	0.951220
right_lobe_of_liver2_female_adult_53_years	chr3	194494111	194494113	194494112	-	RAMPAGE_only	3	5	8	0.328965	2.500000	chr3	194494008	194494113	SINE|MIR|MIR	-	chr3	194402671	194498364	ATP13A3|ENST00000439040.5	-	194402671,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194494049,194497849	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194494280,194498364	0.875000
right_lobe_of_liver2_female_adult_53_years	chr17	76345551	76345575	76345574	-	RAMPAGE_only	5	6	9	0.370085	2.947703	chr17	76345479	76345626	SINE|Alu|AluJb	+	chr17	76309485	76354149	PRPSAP1|ENST00000446526.7	-	76309485,76312869,76313820,76328716,76330042,76330550,76332262,76344670,76348528,76353533	76311700,76313016,76313891,76328862,76330098,76330666,76332435,76344737,76348581,76354149	0.666667
right_lobe_of_liver2_female_adult_53_years	chr1	196715620	196715733	196715659	+	RAMPAGE_only	44	46	553	22.739684	6.858919	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.987342
right_lobe_of_liver2_female_adult_53_years	chr7	107580245	107580267	107580264	+	High_confidence	402	403	1889	77.676786	6.680276	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.941239
right_lobe_of_liver2_female_adult_53_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	19	19	19	0.781291	4.037401	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
right_lobe_of_liver2_female_adult_53_years	chr17	69268805	69268838	69268816	-	High_confidence	48	56	230	9.457735	6.074101	chr17	69268468	69268963	LTR|ERVL|LTR105_Mam	+	chr17	69248259	69268874	ABCA5|ENST00000586811.1	-	69248259,69249904,69250471,69251746,69253572,69253793,69254314,69255542,69255732,69256156,69259705,69260337,69261124,69261634,69264734,69267942,69268719	69248317,69249984,69250621,69251866,69253667,69253869,69254490,69255634,69255850,69256283,69259797,69260412,69261259,69261748,69264905,69268056,69268874	0.891304
right_lobe_of_liver2_female_adult_53_years	chr12	109053951	109053966	109053956	-	High_confidence	17	21	57	2.343873	4.824400	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.964912
right_lobe_of_liver2_female_adult_53_years	chr5	109383431	109383449	109383448	-	High_confidence	4	7	15	0.616809	3.521641	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.933333
right_lobe_of_liver2_female_adult_53_years	chr1	166850105	166850125	166850123	+	RAMPAGE_only	27	30	47	1.932668	4.970573	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.936170
right_lobe_of_liver2_female_adult_53_years	chr13	52661555	52661561	52661555	+	RAMPAGE_only	4	4	10	0.411206	2.521928	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	185881154	185881212	185881154	+	RAMPAGE_only	4	4	12	0.493447	3.022055	chr1	185880911	185881675	LTR|ERV1|LTR1D	-	chr1	185734550	186190953	HMCN1|NM_031935.2	+	185734550,185846025,185864469,185865740,185909336,185911673,185922378,185923389,185925046,185928545,185933548,185962517,185963767,185965801,185970334,185977786,185980977,185982261,185984168,185987431,185989487,185990274,185993181,185994814,185997428,186000044,186001297,186001593,186003717,186007127,186015158,186015957,186016962,186018182,186019540,186023029,186037933,186038828,186039727,186041012,186045687,186048742,186052951,186053824,186055392,186057233,186061850,186062513,186065237,186067833,186069662,186070611,186074740,186076427,186078106,186081206,186082864,186086245,186087216,186087442,186087931,186088144,186088605,186090757,186093133,186093485,186094275,186095242,186103471,186106883,186108460,186112811,186113978,186114818,186115257,186116993,186117458,186119190,186119744,186120010,186122950,186125603,186128077,186129965,186130506,186132327,186136667,186137497,186137801,186144172,186144532,186145402,186145752,186151199,186151605,186152749,186153749,186165110,186166183,186166807,186171336,186172005,186174513,186178415,186182167,186187882,186189511	185735047,185846096,185864628,185865863,185909508,185911780,185922499,185923653,185925191,185928667,185933824,185962659,185963895,185965915,185970493,185977981,185981073,185982389,185984313,185987544,185989647,185990443,185993309,185995087,185997524,186000239,186001428,186001741,186003844,186007282,186015437,186016239,186017071,186018352,186019695,186023153,186038035,186039005,186039879,186041136,186045863,186048839,186053074,186053986,186055674,186057401,186061964,186062600,186065429,186068007,186069776,186070757,186074891,186076622,186078220,186081394,186082961,186086407,186087330,186087645,186088013,186088276,186088755,186090917,186093258,186093669,186094373,186095521,186103668,186106965,186108597,186112953,186114123,186114946,186115414,186117115,186117623,186119298,186119882,186120145,186123220,186125794,186128291,186130100,186130697,186132409,186136937,186137668,186137972,186144343,186144703,186145573,186145923,186151349,186151743,186152871,186153987,186165173,186166303,186166942,186171450,186172131,186174642,186178766,186182287,186188009,186190953	0.916667
right_lobe_of_liver2_female_adult_53_years	chr2	209495119	209495142	209495141	+	RAMPAGE_only	4	4	11	0.452326	3.321928	chr2	209495053	209495629	LINE|L1|L1P3	+	chr2	209424057	209730518	MAP2|ENST00000199940.10	+	209424057,209507591,209580035,209625052,209653141,209678571,209680749,209700276,209704449,209705579,209709913,209723594,209725708,209729849,209730181	209424276,209507641,209580100,209625129,209653432,209678685,209680827,209700338,209704620,209705727,209710254,209723687,209725790,209729962,209730518	0.545455
right_lobe_of_liver2_female_adult_53_years	chrX	118419229	118419281	118419229	+	RAMPAGE_only	7	9	41	1.685944	4.714515	chrX	118415803	118419707	LINE|L1|L1PB1	-	chrX	118392747	118449336	WDR44|ENST00000371848.3	+	118392747,118394054,118395248,118396969,118398386,118404337,118406874,118409488,118410894,118432780,118436701,118441367,118442243,118442564,118443559,118444359,118447059,118448892	118393271,118394185,118395344,118397106,118398470,118404444,118407026,118409627,118410959,118432894,118436824,118441559,118442345,118442680,118443687,118444494,118447114,118449336	0.902439
right_lobe_of_liver2_female_adult_53_years	chr11	93499303	93499345	93499303	-	High_confidence	8	9	38	1.562582	4.228062	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	1.000000
right_lobe_of_liver2_female_adult_53_years	chr19	7642278	7642315	7642297	+	High_confidence	4	4	19	0.781291	3.836592	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.631579
right_lobe_of_liver2_female_adult_53_years	chr16	253927	253928	253927	+	High_confidence	7	7	7	0.287844	2.807355	chr16	253772	253931	SINE|MIR|MIR	-	chr16	254627	260788	FAM234A|ENST00000421000.1	+	254627,259482,259968,260412	254681,259599,260160,260788	1.000000
right_lobe_of_liver2_female_adult_53_years	chrX	139551102	139551226	139551102	+	RAMPAGE_only	13	14	211	8.676443	6.726064	chrX	139551151	139551275	DNA|hAT-Ac|OldhAT1	+	chrX	139544680	139563301	F9|ENST00000643157.1	+	139544680,139547304,139548362,139551061,139560740,139561523,139563105	139545148,139547894,139548491,139551264,139560855,139561741,139563301	0.758294
right_lobe_of_liver2_female_adult_53_years	chr1	159920338	159920486	159920338	-	RAMPAGE_only	9	9	90	3.700853	5.883272	chr1	159920065	159920288	LINE|CR1|L3b	-	chr1	159918106	159923717	TAGLN2|NM_001277224.1	-	159918106,159919273,159919660,159920329,159923435	159918941,159919376,159919835,159920537,159923717	0.977778
right_lobe_of_liver2_female_adult_53_years	chr8	73358721	73358730	73358729	+	High_confidence	4	6	11	0.452326	3.321928	chr8	73358752	73359123	LTR|ERVL-MaLR|MLT1A1	+	chr8	73358912	73362788	AC111149.2|ENST00000518355.1	+	73358912,73362322	73359045,73362788	0.909091
right_lobe_of_liver2_female_adult_53_years	chr6	136225617	136225623	136225622	-	High_confidence	56	94	174	7.154982	6.555713	chr6	136225478	136225763	LTR|ERVL-MaLR|THE1B	-	chr6	136094714	136225595	AL138828.1|ENST00000417643.5	-	136094714,136095715,136095993,136096119,136110995,136117069,136162251,136225537	136094779,136095825,136096019,136096288,136111101,136117172,136162348,136225595	0.534483
right_lobe_of_liver2_female_adult_53_years	chr13	106562008	106562034	106562033	-	High_confidence	3	3	14	0.575688	3.521641	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.928571
right_lobe_of_liver2_female_adult_53_years	chr12	109594766	109594792	109594791	+	High_confidence	186	213	680	27.961998	5.923060	chr12	109594704	109594847	LTR|ERVL-MaLR|MLT1K	-	chr12	109594706	109597261	STRG.42788.10	+	109594706,109595027,109596425	109594903,109595181,109597261	0.980882
right_lobe_of_liver2_female_adult_53_years	chr7	99659789	99659838	99659789	-	RAMPAGE_only	2	2	13	0.534568	3.584963	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99658832	99663582	CYP3A5|ENST00000473347.1	-	99658832,99662815	99660659,99663582	0.923077
right_lobe_of_liver2_female_adult_53_years	chr12	50924078	50924080	50924078	+	High_confidence	9	16	16	0.657929	3.155639	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50924004	50929955	METTL7A|ENST00000550502.1	+	50924004,50925036,50929913	50924080,50925536,50929955	0.500000
right_lobe_of_liver2_female_adult_53_years	chr2	53936105	53936122	53936105	-	RAMPAGE_only	1	1	7	0.287844	2.584963	chr2	53935897	53936066	SINE|Alu|AluSx1	-	chr2	53864066	53970840	PSME4|ENST00000404125.5	-	53864066,53866084,53866746,53869375,53874338,53875626,53885689,53887258,53887857,53888720,53890103,53892807,53893673,53895006,53895582,53896803,53897869,53898300,53899880,53901349,53904024,53906597,53906805,53908319,53908509,53908783,53910074,53919150,53920192,53920888,53922516,53923048,53923320,53925538,53925958,53927393,53928116,53931834,53932667,53934604,53936086,53936763,53937390,53939955,53948420,53949142,53970542	53865573,53866223,53866880,53869538,53874494,53875755,53885775,53887467,53887989,53888812,53890208,53892960,53893799,53895076,53895736,53896885,53897999,53898354,53900017,53901559,53904156,53906693,53906868,53908418,53908565,53908840,53910130,53919246,53920350,53921104,53922584,53923118,53923419,53925689,53926023,53927483,53928303,53932100,53932760,53934727,53936161,53936827,53937540,53940000,53948537,53949283,53970840	0.857143
right_lobe_of_liver2_female_adult_53_years	chr7	29376379	29376396	29376393	+	RAMPAGE_only	40	43	98	4.029817	5.559343	chr7	29376417	29376587	DNA|hAT-Charlie|MER5A	+	chr7	29396647	29401281	CHN2|ENST00000491856.1	+	29396647,29400542	29398486,29401281	0.755102
right_lobe_of_liver2_female_adult_53_years	chr1	97904654	97904663	97904654	-	RAMPAGE_only	5	7	16	0.657929	3.577820	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.687500
right_lobe_of_liver2_female_adult_53_years	chr4	99143233	99143239	99143238	-	High_confidence	6	8	16	0.657929	3.640224	chr4	99143208	99143351	DNA|hAT-Charlie|MER5A1	+	chr4	99136536	99143206	ADH4|ENST00000503944.5	-	99136536,99142678,99143165	99136697,99142780,99143206	0.562500
right_lobe_of_liver2_female_adult_53_years	chr7	35763125	35763130	35763129	+	High_confidence	3	4	9	0.370085	3.169925	chr7	35762878	35763437	LINE|L2|L2a	-	chr7	35763047	35763405	STRG.26196.1	+	35763047	35763405	0.555556
right_lobe_of_liver2_female_adult_53_years	chr12	113399112	113399145	113399123	-	RAMPAGE_only	6	8	41	1.685944	4.534184	chr12	113398993	113399080	SINE|MIR|MIRc	-	chr12	113396639	113403886	SDS|ENST00000553112.5	-	113396639,113398514,113398706,113399111,113399555,113403767	113397392,113398606,113398846,113399151,113399710,113403886	0.878049
right_lobe_of_liver2_female_adult_53_years	chr14	94384282	94384285	94384284	-	RAMPAGE_only	10	16	24	0.986894	2.861193	chr14	94384143	94384284	SINE|MIR|MIRb	+	chr14	94383628	94390635	SERPINA1|ENST00000555289.5	-	94383628,94384033,94388559,94388800,94390456	94383647,94384130,94388663,94389010,94390635	0.625000
right_lobe_of_liver2_female_adult_53_years	chr8	17885928	17885953	17885952	-	High_confidence	3	3	10	0.411206	3.121928	chr8	17885845	17885946	SINE|MIR|MIRb	-	chr8	17864388	17885779	FGL1|ENST00000522444.5	-	17864388,17868547,17868915,17874018,17874361,17881998,17885491	17864751,17868735,17869004,17874116,17874521,17882179,17885779	0.700000
right_lobe_of_liver2_female_adult_53_years	chr5	140700445	140700457	140700445	+	High_confidence	172	258	630	25.905969	4.997955	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.988889
right_lobe_of_liver2_female_adult_53_years	chr9	92536621	92536704	92536674	-	High_confidence	65	66	306	12.582899	5.999947	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.947712
right_lobe_of_liver2_female_adult_53_years	chr10	106011374	106011380	106011374	+	High_confidence	5	5	9	0.370085	2.503258	chr10	106009563	106011791	LINE|L1|L1M1	-	chr10	106011447	106014162	STRG.36303.1	+	106011447,106013536	106011654,106014162	1.000000
right_lobe_of_liver2_female_adult_53_years	chr17	29046650	29046720	29046719	+	High_confidence	3	4	19	0.781291	3.947703	chr17	29046763	29046953	SINE|MIR|MIRb	+	chr17	29046639	29056225	PIPOX|ENST00000484308.5	+	29046639,29052919,29053412,29054544,29055062,29055812,29056174	29046847,29053133,29053595,29054691,29055221,29055888,29056225	0.842105
right_lobe_of_liver2_female_adult_53_years	chr6	18130098	18130112	18130098	-	RAMPAGE_only	8	8	13	0.534568	3.392747	chr6	18130001	18130306	SINE|Alu|AluSq2	+	chr6	18128310	18155074	TPMT|ENST00000309983.4	-	18128310,18132132,18133803,18138962,18139664,18143595,18147822,18148987,18155032	18130780,18132177,18133889,18139037,18139717,18143728,18147915,18149171,18155074	0.923077
right_lobe_of_liver2_female_adult_53_years	chr5	55982757	55982801	55982783	-	High_confidence	7	9	34	1.398100	4.616875	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	1.000000
right_lobe_of_liver2_female_adult_53_years	chr12	64439294	64439315	64439294	+	RAMPAGE_only	2	3	8	0.328965	2.750000	chr12	64439324	64439679	DNA|hAT-Charlie|Charlie4a	+	chr12	64404372	64448684	XPOT|NM_007235.4	+	64404372,64409961,64414906,64416697,64418045,64418875,64420069,64420352,64421234,64423004,64423181,64424598,64425037,64425337,64425814,64428050,64430048,64431537,64433413,64434506,64434793,64435626,64439243,64445074,64448104	64404804,64410095,64414989,64416754,64418115,64419094,64420254,64420521,64421471,64423043,64423244,64424723,64425182,64425457,64425909,64428120,64430287,64431823,64433603,64434623,64434909,64435674,64439315,64445131,64448684	1.000000
right_lobe_of_liver2_female_adult_53_years	chr13	60410080	60410081	60410080	+	RAMPAGE_only	31	34	41	1.685944	4.704994	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60397830	60573864	TDRD3|ENST00000648252.1	+	60397830,60400255,60402717,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573615	60398631,60400292,60402815,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573864	0.975610
right_lobe_of_liver2_female_adult_53_years	chr1	196975000	196975062	196975044	+	RAMPAGE_only	5	5	33	1.356979	4.601410	chr1	196974981	196976153	LINE|L2|L2	-	chr1	196977536	197009674	CFHR5|NM_030787.3	+	196977536,196982884,196983960,196994079,196995716,196996021,196998127,197002481,197004660,197008486	196977722,196983079,196984137,196994256,196995899,196996201,196998304,197002664,197004843,197009674	0.636364
right_lobe_of_liver2_female_adult_53_years	chr12	102923573	102923574	102923573	-	RAMPAGE_only	28	28	28	1.151376	3.869331	chr12	102923568	102923702	LINE|L1|L1MC5	-	chr12	102836884	102917603	PAH|ENST00000553106.5	-	102836884,102840399,102843645,102844335,102846894,102851686,102852814,102855135,102866595,102877461,102894734,102912790,102917070	102839218,102840515,102843779,102844431,102846951,102851756,102852950,102855332,102866663,102877550,102894918,102912898,102917603	1.000000
right_lobe_of_liver2_female_adult_53_years	chr2	32481413	32481438	32481437	+	RAMPAGE_only	2	2	6	0.246724	2.584963	chr2	32481484	32481786	SINE|Alu|AluYj4	+	chr2	32436074	32611581	STRG.6548.2	+	32436074,32439507,32441328,32442064,32442323,32443490,32445520,32448794,32453807,32463193,32464508,32465064,32467524,32467902,32468436,32469394,32470167,32471013,32473111,32476212,32477367,32478634,32479461,32481319,32482428,32485642,32487646,32488587,32490040,32491424,32493539,32499546,32501712,32502794,32503041,32505004,32507979,32509737,32510525,32512932,32514989,32518253,32518816,32524887,32525463,32529650,32531354,32543240,32545642,32547849,32549312,32575155,32593914,32595033,32597750,32599738,32603005,32607454,32611447	32436184,32439686,32441462,32442226,32442455,32443588,32445668,32448928,32453942,32463381,32464823,32465164,32467739,32468111,32468783,32469614,32470301,32471151,32473239,32476344,32477583,32478818,32479617,32481453,32482582,32485759,32487801,32488714,32490151,32491558,32493667,32500109,32501888,32502891,32503236,32505205,32508259,32509994,32510634,32513154,32515770,32518397,32518946,32525019,32525628,32529824,32531551,32543541,32545860,32548014,32549481,32575366,32594060,32595144,32597968,32599900,32603083,32607643,32611581	1.000000
right_lobe_of_liver2_female_adult_53_years	chr7	154928503	154928506	154928503	+	High_confidence	7	7	15	0.616809	3.664498	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.866667
right_lobe_of_liver2_female_adult_53_years	chr8	9188203	9188228	9188203	+	High_confidence	4	4	20	0.822412	4.142664	chr8	9188163	9188460	LINE|L2|L2b	-	chr8	9188958	9203126	AC022784.1|ENST00000649571.1	+	9188958,9189347,9198923,9202498	9189046,9189586,9198991,9203126	0.600000
right_lobe_of_liver2_female_adult_53_years	chr16	48352026	48352176	48352091	+	RAMPAGE_only	36	36	146	6.003605	6.150236	chr16	48352051	48352235	DNA|hAT-Charlie|MER5A	+	chr16	48244387	48362737	STRG.50166.3	+	48244387,48252130,48256609,48258617,48261423,48262777,48270015,48277337,48296014,48299661,48303171,48334215,48347506,48348099,48351580,48361853	48244621,48252365,48256741,48258740,48261587,48262872,48270274,48277479,48296165,48299788,48303305,48334358,48347714,48348290,48361759,48362737	0.979452
right_lobe_of_liver2_female_adult_53_years	chr10	121498518	121498562	121498518	-	RAMPAGE_only	2	2	17	0.699050	3.500000	chr10	121498455	121498527	DNA|hAT-Ac|OldhAT1	+	chr10	121479854	121515179	FGFR2|ENST00000429361.5	-	121479854,121485394,121487353,121487990,121496531,121498494,121500825,121503789,121515116	121480021,121485532,121487424,121488113,121496722,121498605,121500947,121503941,121515179	0.941176
right_lobe_of_liver2_female_adult_53_years	chrX	37888028	37888029	37888028	-	High_confidence	7	9	10	0.411206	2.947703	chrX	37884479	37888014	LTR|ERV1|MER41-int	-	chrX	37838835	37888095	STRG.59487.3	-	37838835,37841027,37841781,37846316,37887845	37840651,37841105,37841905,37846358,37888095	0.900000
right_lobe_of_liver2_female_adult_53_years	chr5	122478855	122478881	122478867	-	High_confidence	38	38	147	6.044726	6.392106	chr5	122478731	122478846	LTR|ERV1|LTR7	-	chr5	122454137	122478875	STRG.20264.2	-	122454137,122468983,122478585	122454509,122469061,122478875	0.591837
right_lobe_of_liver2_female_adult_53_years	chr5	176943355	176943366	176943365	-	RAMPAGE_only	3	3	8	0.328965	2.521641	chr5	176943235	176943320	DNA|hAT-Charlie|Charlie10	-	chr5	176905065	176970793	UIMC1|ENST00000510698.2	-	176905065,176906010,176907113,176908522,176911310,176943334,176951473,176955958,176958092,176969600,176970741	176905492,176906047,176907177,176908694,176911389,176943488,176951577,176956035,176958154,176969706,176970793	0.875000
right_lobe_of_liver2_female_adult_53_years	chr10	96620372	96620511	96620372	-	High_confidence	72	73	393	16.160390	6.719899	chr10	96620235	96620332	LINE|L2|L2b	-	chr10	96603739	96620411	PIK3AP1|ENST00000489982.1	-	96603739,96609711,96616638,96620351	96604049,96609867,96616711,96620411	0.679389
right_lobe_of_liver2_female_adult_53_years	chr6	30493438	30493936	30493935	+	RAMPAGE_only	47	47	416	17.106163	6.647667	chr6	30493706	30494073	LTR|ERVL-MaLR|MST-int	+	chr6	30489466	30494205	HLA-E|ENST00000376630.4	+	30489466,30489725,30490239,30491136,30491536,30492403,30492540,30492748	30489595,30489995,30490515,30491412,30491653,30492436,30492583,30494205	0.997596
right_lobe_of_liver2_female_adult_53_years	chr10	30991482	30991483	30991482	-	High_confidence	27	28	32	1.315859	4.063307	chr10	30990894	30991661	LINE|L1|L1M4b	+	chr10	30989292	30992304	STRG.34672.8	-	30989292	30992304	0.812500
right_lobe_of_liver2_female_adult_53_years	chr4	168998269	168998279	168998269	-	RAMPAGE_only	2	2	8	0.328965	2.807355	chr4	168998173	168998411	LINE|L1|L1ME4b	+	chr4	168987589	169010080	STRG.17358.2	-	168987589,168998201,169002070,169006754,169007635,169009947	168990328,168998285,169002205,169006891,169007756,169010080	0.875000
right_lobe_of_liver2_female_adult_53_years	chr4	99139070	99139078	99139077	-	RAMPAGE_only	15	15	23	0.945773	3.820889	chr4	99138541	99139050	LINE|L1|L1ME3C	-	chr4	99124363	99136537	ADH4|ENST00000509471.5	-	99124363,99126593,99131503,99136465	99124466,99126732,99131764,99136537	0.608696
right_lobe_of_liver2_female_adult_53_years	chr13	99496755	99496783	99496755	-	High_confidence	3	3	11	0.452326	3.121928	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.545455
right_lobe_of_liver2_female_adult_53_years	chr1	227142955	227142957	227142955	-	RAMPAGE_only	5	9	14	0.575688	3.085055	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.857143
right_lobe_of_liver2_female_adult_53_years	chr4	118835947	118835954	118835953	-	High_confidence	30	30	49	2.014909	5.069236	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.979592
right_lobe_of_liver2_female_adult_53_years	chr3	142926760	142926767	142926766	+	High_confidence	8	8	20	0.822412	4.142664	chr3	142926619	142927109	LINE|L1|HAL1	+	chr3	142926674	142942536	LOC100507389|NR_038455.1	+	142926674,142933204,142936422,142938474,142941398	142926896,142933268,142936646,142938653,142942536	0.500000
right_lobe_of_liver2_female_adult_53_years	chr10	5768371	5768374	5768371	-	RAMPAGE_only	5	5	11	0.452326	2.913977	chr10	5768371	5769005	LINE|L1|L1MB3	+	chr10	5765228	5769389	GDI2|ENST00000479928.1	-	5765228,5766240,5768212	5766152,5766638,5769389	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	100268280	100268281	100268280	+	RAMPAGE_only	93	94	102	4.194300	4.220904	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.990196
right_lobe_of_liver2_female_adult_53_years	chr15	93863065	93863066	93863065	+	High_confidence	5	5	8	0.328965	2.521641	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.750000
right_lobe_of_liver2_female_adult_53_years	chr1	31471456	31471480	31471478	-	High_confidence	13	24	43	1.768185	4.795581	chr1	31471367	31471933	LTR|ERV1|LTR10A	-	chr1	31453810	31471601	STRG.653.1	-	31453810,31461321,31471065	31460503,31461407,31471601	0.627907
right_lobe_of_liver2_female_adult_53_years	chr16	13246233	13246262	13246258	+	High_confidence	4	4	19	0.781291	3.787144	chr16	13246112	13246474	LTR|ERVL-MaLR|THE1B	+	chr16	13246245	13562898	STRG.49693.1	+	13246245,13350179,13474209,13562706	13246390,13350421,13474341,13562898	0.526316
right_lobe_of_liver2_female_adult_53_years	chr11	58939473	58939512	58939483	+	High_confidence	468	472	1085	44.615835	7.134366	chr11	58939456	58939812	LTR|ERV1|LOR1-int	+	chr11	58939483	58954821	GLYATL1|ENST00000532726.5	+	58939483,58943542,58947045,58947857,58954769	58939650,58943666,58947165,58947965,58954821	0.742857
right_lobe_of_liver2_female_adult_53_years	chr12	128905263	128905324	128905263	+	RAMPAGE_only	3	3	27	1.110256	4.403856	chr12	128905189	128905299	DNA|hAT-Charlie|Charlie5	-	chr12	128864135	128983739	GLT1D1|ENST00000537468.1	+	128864135,128875913,128888638,128899235,128906906,128912423,128914932,128926358,128927104,128945325,128947337,128957544,128982928	128864179,128876062,128888744,128899287,128906954,128912460,128914989,128926454,128927154,128945369,128947458,128957643,128983739	0.629630
right_lobe_of_liver2_female_adult_53_years	chr12	29640674	29640689	29640674	-	High_confidence	3	4	8	0.328965	2.500000	chr12	29640284	29642617	LINE|L1|L1PBa1	+	chr12	29505981	29641238	TMTC1|ENST00000319685.12	-	29505981,29512042,29514481,29516348,29517426,29518471,29520617,29536208,29556856,29572104,29583406,29604177,29633146,29640559	29506986,29512120,29514604,29516486,29517571,29518607,29520720,29536317,29557000,29572218,29583574,29604299,29633336,29641238	0.625000
right_lobe_of_liver2_female_adult_53_years	chr4	73508597	73508625	73508597	+	High_confidence	3	3	12	0.493447	2.855389	chr4	73508567	73508887	SINE|Alu|AluJr4	-	chr4	73508802	73528533	LOC728040|NR_046377.1	+	73508802,73509674,73510202,73528412	73509252,73509725,73510343,73528533	0.833333
right_lobe_of_liver2_female_adult_53_years	chr1	9239806	9239876	9239843	+	High_confidence	87	89	515	21.177101	7.083123	chr1	9239801	9239853	LINE|Penelope|Penelope1_Vert	+	chr1	9239843	9271337	H6PD|NM_001282587.1	+	9239843,9244924,9246965,9262058,9263508	9240018,9245561,9247083,9262328,9271337	0.792233
right_lobe_of_liver2_female_adult_53_years	chr4	76273195	76273196	76273195	+	RAMPAGE_only	7	7	10	0.411206	2.947703	chr4	76273106	76273377	DNA|TcMar-Tigger|MER44B	-	chr4	76251740	76283754	FAM47E|ENST00000424749.6	+	76251740,76256177,76263703,76268659,76271567,76278068,76280263,76283380	76251820,76256523,76263843,76268768,76271768,76278224,76280341,76283754	0.500000
right_lobe_of_liver2_female_adult_53_years	chr20	3795753	3795783	3795765	+	High_confidence	7	9	56	2.302753	5.245447	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.964286
right_lobe_of_liver2_female_adult_53_years	chr1	183590910	183590911	183590910	-	High_confidence	9	9	13	0.534568	3.022055	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.769231
right_lobe_of_liver2_female_adult_53_years	chr18	54234937	54234976	54234971	-	RAMPAGE_only	12	12	40	1.644823	4.561769	chr18	54234703	54235088	LTR|ERVL|LTR79	-	chr18	54151600	54224788	MBD2|ENST00000256429.7	-	54151600,54159764,54164522,54166075,54188873,54204997,54224017	54155311,54159903,54164700,54166166,54189011,54205157,54224788	0.975000
right_lobe_of_liver2_female_adult_53_years	chr11	57496517	57496530	57496517	-	RAMPAGE_only	7	7	28	1.151376	4.008622	chr11	57496393	57496514	DNA|hAT-Charlie|Charlie16a	-	chr11	57491302	57499677	SLC43A1|ENST00000533515.5	-	57491302,57491590,57491715,57493992,57496030,57497752,57499552	57491362,57491626,57491862,57494171,57496164,57497845,57499677	0.500000
right_lobe_of_liver2_female_adult_53_years	chr11	65434557	65434996	65434819	+	RAMPAGE_only	20	20	353	14.515567	6.620367	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.997167
right_lobe_of_liver2_female_adult_53_years	chr5	25963826	25963839	25963838	+	High_confidence	12	12	22	0.904653	3.546439	chr5	25963846	25964173	LTR|ERV1|MER65-int	+	chr5	25963775	25964167	STRG.18055.1	+	25963775	25964167	0.545455
right_lobe_of_liver2_female_adult_53_years	chr22	42887284	42887309	42887298	-	RAMPAGE_only	3	4	15	0.616809	3.378783	chr22	42887294	42887441	SINE|MIR|MIRb	+	chr22	42876136	42912157	PACSIN2|ENST00000634914.1	-	42876136,42876887,42879047,42880616,42882183,42884385,42888642,42890946,42893456,42912020	42876333,42877010,42879169,42880622,42882304,42884561,42888798,42891182,42893613,42912157	0.933333
right_lobe_of_liver2_female_adult_53_years	chr2	199956075	199956084	199956075	+	High_confidence	5	5	15	0.616809	3.773557	chr2	199955996	199956125	LINE|L1|L1MDb	+	chr2	199955820	200008540	MAIP1|ENST00000435773.2	+	199955820,199959267,199959753,200005742,200008465	199956248,199959339,199959880,200005777,200008540	0.800000
right_lobe_of_liver2_female_adult_53_years	chr6	34757087	34757109	34757103	+	High_confidence	3	3	15	0.616809	3.506891	chr6	34757127	34757285	LINE|L2|L2a	+	chr6	34757093	34773857	SNRPC|NM_003093.2	+	34757093,34757911,34762594,34767907,34770290,34773445	34757551,34757954,34762703,34767997,34770395,34773857	1.000000
right_lobe_of_liver2_female_adult_53_years	chr22	50387647	50387658	50387647	+	RAMPAGE_only	50	75	154	6.332570	6.522071	chr22	50387583	50387737	DNA|hAT-Blackjack|MER63B	-	chr22	50372071	50444391	PPP6R2|ENST00000216061.9	+	50372071,50388985,50391866,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50436987,50437505,50437842,50438173,50438598,50439700,50439960,50440800,50443865,50444198	50372150,50389111,50392015,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437068,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50444391	0.831169
right_lobe_of_liver2_female_adult_53_years	chr22	46637366	46637386	46637377	+	RAMPAGE_only	4	6	16	0.657929	3.773557	chr22	46637256	46637538	SINE|Alu|AluYc	-	chr22	46626760	46679790	GRAMD4|ENST00000361034.7	+	46626760,46637839,46658186,46661380,46663039,46663837,46664025,46665614,46666824,46668095,46668688,46668798,46672842,46673669,46674656,46675467,46676599,46677146	46626961,46637960,46658307,46661442,46663172,46663863,46664117,46665706,46666873,46668167,46668732,46668908,46672997,46673814,46674750,46675552,46676668,46679790	0.875000
right_lobe_of_liver2_female_adult_53_years	chr15	75347037	75347043	75347037	+	High_confidence	3	3	7	0.287844	2.807355	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.857143
right_lobe_of_liver2_female_adult_53_years	chrX	30867135	30867157	30867156	-	RAMPAGE_only	3	3	6	0.246724	2.584963	chrX	30866257	30867266	LINE|L1|L1MC3	+	chrX	30834620	30871802	TAB3|ENST00000467136.5	-	30834620,30842965,30852777,30854115,30859486,30867114,30867464,30871698	30836835,30846644,30852938,30855562,30859678,30867218,30867549,30871802	1.000000
right_lobe_of_liver2_female_adult_53_years	chr12	53464815	53464834	53464815	+	RAMPAGE_only	17	19	36	1.480341	4.382021	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.916667
right_lobe_of_liver2_female_adult_53_years	chr16	11774301	11774342	11774341	-	High_confidence	7	7	13	0.534568	3.251629	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	0.846154
right_lobe_of_liver2_female_adult_53_years	chr10	32982537	32982592	32982550	+	High_confidence	37	47	105	4.317661	4.978452	chr10	32982518	32982768	SINE|Alu|AluSz6	-	chr10	32982540	33082102	ITGB1-DT|ENST00000414157.1	+	32982540,32985622,33081341	32982685,32985757,33082102	0.780952
right_lobe_of_liver2_female_adult_53_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	21	22	44	1.809306	3.997755	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.977273
right_lobe_of_liver2_female_adult_53_years	chr17	57516747	57516750	57516747	+	RAMPAGE_only	3	3	8	0.328965	2.807355	chr17	57516743	57516829	SINE|MIR|MIRb	-	chr17	57440689	57675059	MSI2|ENST00000579505.5	+	57440689,57529675,57596867,57615969,57627228,57652098,57674917	57440739,57529724,57596950,57616084,57627303,57652161,57675059	0.500000
right_lobe_of_liver2_female_adult_53_years	chr14	94612495	94612514	94612513	+	High_confidence	17	17	35	1.439220	4.377727	chr14	94612534	94612719	SINE|MIR|MIR3	+	chr14	94612404	94624054	SERPINA3|ENST00000556968.2	+	94612404,94614433,94622340,94623610	94612447,94615084,94622491,94624054	0.914286
right_lobe_of_liver2_female_adult_53_years	chr9	111284874	111284875	111284874	-	High_confidence	8	8	12	0.493447	3.251629	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.916667
right_lobe_of_liver2_female_adult_53_years	chr13	110179288	110179322	110179288	-	RAMPAGE_only	2	2	12	0.493447	3.095795	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110149064	110242697	STRG.44744.2	-	110149064,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110186480,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186408,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242697	0.916667
right_lobe_of_liver2_female_adult_53_years	chr1	21551069	21551163	21551123	-	High_confidence	8	11	49	2.014909	4.649726	chr1	21550998	21551128	LINE|L1|L1ME3A	-	chr1	21550570	21551151	STRG.428.1	-	21550570	21551151	0.877551
right_lobe_of_liver2_female_adult_53_years	chr14	21061610	21061615	21061614	+	High_confidence	9	9	16	0.657929	3.456565	chr14	21061636	21062216	LTR?|LTR?|MamRep1151	+	chr14	21061281	21089414	STRG.44938.2	+	21061281,21068853,21073044,21073931,21075331,21075644,21076562,21076773,21078176,21078372,21078883,21080659,21080872,21081508,21082243,21082830,21083834,21084752,21085688,21087000,21087319,21087967,21088829,21089013	21061663,21069469,21073242,21075180,21075499,21076456,21076643,21076890,21078272,21078488,21079010,21080782,21081016,21082119,21082478,21082917,21084050,21084923,21085866,21087105,21087463,21088098,21088876,21089414	0.812500
right_lobe_of_liver2_female_adult_53_years	chr10	30001063	30001118	30001070	-	High_confidence	63	95	258	10.609111	6.200634	chr10	30000830	30001339	LTR|ERVL|LTR40a	-	chr10	29991087	30001343	STRG.34638.1	-	29991087,30000959	29993264,30001343	0.910853
right_lobe_of_liver2_female_adult_53_years	chr19	19095857	19095859	19095857	+	High_confidence	3	5	7	0.287844	2.521641	chr19	19095784	19095950	SINE|MIR|MIRb	+	chr19	19095942	19106934	SLC25A42|ENST00000594070.5	+	19095942,19101780,19104912,19105560,19106268	19096205,19101886,19104938,19105727,19106934	1.000000
right_lobe_of_liver2_female_adult_53_years	chr11	60906794	60906832	60906822	+	High_confidence	3	3	9	0.370085	3.169925	chr11	60906806	60906872	DNA|hAT-Charlie|MER5A	-	chr11	60906788	60909742	AP003721.4|ENST00000544421.1	+	60906788,60909426	60907282,60909742	0.888889
right_lobe_of_liver2_female_adult_53_years	chr2	11201336	11201356	11201336	-	RAMPAGE_only	2	3	8	0.328965	2.500000	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	1.000000
right_lobe_of_liver2_female_adult_53_years	chr2	227534913	227534933	227534932	+	RAMPAGE_only	7	8	22	0.904653	4.201841	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.772727
right_lobe_of_liver2_female_adult_53_years	chr1	12146954	12146967	12146954	+	High_confidence	3	3	11	0.452326	3.321928	chr1	12146731	12147081	LINE|L2|L2c	-	chr1	12147016	12193165	STRG.274.3	+	12147016,12188795,12190956,12191773,12192430,12192862	12147075,12188895,12191085,12191923,12192524,12193165	0.727273
right_lobe_of_liver2_female_adult_53_years	chr1	6639917	6639948	6639923	-	RAMPAGE_only	7	7	24	0.986894	3.827910	chr1	6639724	6639885	SINE|MIR|MIR	-	chr1	6634167	6645057	DNAJC11|ENST00000465508.5	-	6634167,6636116,6637197,6637446,6639901,6644557,6645040	6635700,6636246,6637340,6638364,6640057,6644674,6645057	0.958333
right_lobe_of_liver2_female_adult_53_years	chr21	34512187	34512220	34512209	-	High_confidence	3	3	12	0.493447	3.459432	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.500000
right_lobe_of_liver2_female_adult_53_years	chr3	51986165	51986170	51986165	+	High_confidence	3	3	8	0.328965	3.000000	chr3	51986054	51986192	SINE|MIR|MIR1_Amn	-	chr3	51986209	51987453	ACY1|ENST00000464587.2	+	51986209,51986414,51986604,51986987,51987146,51987308	51986331,51986504,51986661,51987061,51987196,51987453	0.875000
right_lobe_of_liver2_female_adult_53_years	chr1	88647466	88647491	88647478	+	RAMPAGE_only	46	46	139	5.715761	5.806971	chr1	88647368	88647565	LTR|ERVL-MaLR|MLT1O	-	chr1	88684143	88836255	PKN2|NM_006256.3	+	88684143,88740987,88760221,88770351,88771420,88771662,88784638,88786103,88804390,88804845,88805496,88805890,88807312,88807528,88807683,88813556,88821940,88824309,88828480,88832743,88833076,88833244	88684628,88741288,88760376,88770469,88771566,88771879,88784824,88786213,88804534,88804921,88805671,88806017,88807443,88807604,88807775,88813733,88822003,88824386,88828623,88832851,88833157,88836255	0.791367
right_lobe_of_liver2_female_adult_53_years	chr5	32403148	32403227	32403148	-	RAMPAGE_only	55	56	87	3.577491	5.502033	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.988506
right_lobe_of_liver2_female_adult_53_years	chr13	89402443	89402452	89402447	+	High_confidence	67	133	247	10.156785	6.939807	chr13	89402259	89402639	LTR|ERVL-MaLR|MSTA	+	chr13	89402410	89480984	STRG.44239.3	+	89402410,89414430,89475714	89402508,89414600,89480984	0.502024
right_lobe_of_liver2_female_adult_53_years	chr3	12648641	12648664	12648641	-	RAMPAGE_only	4	4	18	0.740171	3.616875	chr3	12648598	12648757	SINE|Alu|AluSz6	+	chr3	12584332	12664125	RAF1|ENST00000423275.5	-	12584332,12584846,12585121,12585680,12587590,12590797,12591707,12599690,12600151,12600387,12604135,12606200,12608765,12609232,12618514,12663812	12584657,12584981,12585253,12585799,12587637,12590974,12591792,12599808,12600279,12600415,12604289,12606299,12608923,12609335,12618747,12664125	0.666667
right_lobe_of_liver2_female_adult_53_years	chr20	38346075	38346076	38346075	+	High_confidence	132	132	145	5.962485	5.121758	chr20	38346041	38346224	SINE|MIR|MIRb	+	chr20	38346355	38377023	LBP|ENST00000217407.2	+	38346355,38349547,38350810,38354283,38355345,38360703,38363974,38364575,38366768,38368994,38370737,38371279,38373071,38373936,38376624	38346640,38349662,38350939,38354439,38355409,38360767,38364066,38364752,38366828,38369162,38370805,38371322,38373135,38374013,38377023	0.820690
right_lobe_of_liver2_female_adult_53_years	chr4	186260158	186260218	186260194	+	RAMPAGE_only	16	16	80	3.289647	5.924034	chr4	186259848	186260334	DNA|hAT-Charlie|MER1A	-	chr4	186265944	186288780	F11|ENST00000403665.6	+	186265944,186267135,186271608,186273070,186274115,186275786,186276230,186280011,186280222,186280473,186284091,186285637,186286414,186287683,186288452	186266295,186267191,186271771,186273177,186274275,186275896,186276390,186280121,186280385,186280580,186284260,186285813,186286510,186287823,186288780	0.812500
right_lobe_of_liver2_female_adult_53_years	chr2	232845866	232845876	232845866	+	RAMPAGE_only	4	4	9	0.370085	3.000000	chr2	232845876	232846546	LINE|CR1|L3	+	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.888889
right_lobe_of_liver2_female_adult_53_years	chr1	54865648	54865680	54865666	-	RAMPAGE_only	3	5	13	0.534568	3.392747	chr1	54865506	54865684	SINE|MIR|MIRc	-	chr1	54852366	54886836	DHCR24|ENST00000647585.1	-	54852366,54853433,54854036,54865302,54871349,54875092,54875941,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54883773,54886836	0.923077
right_lobe_of_liver2_female_adult_53_years	chr8	16186271	16186272	16186271	-	High_confidence	6	7	9	0.370085	2.947703	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.666667
right_lobe_of_liver2_female_adult_53_years	chr1	51403428	51403433	51403428	-	RAMPAGE_only	4	4	10	0.411206	2.646439	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	1.000000
right_lobe_of_liver2_female_adult_53_years	chr17	56904443	56904471	56904445	-	High_confidence	3	5	9	0.370085	2.641604	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56895769	56904343	TRIM25|ENST00000570473.5	-	56895769,56899114,56901418,56904254	56895952,56899180,56901578,56904343	0.888889
right_lobe_of_liver2_female_adult_53_years	chr16	28608308	28608364	28608315	-	High_confidence	7	7	38	1.562582	4.736216	chr16	28608009	28608286	SINE|Alu|AluSp	-	chr16	28605195	28608920	SULT1A1|ENST00000569554.5	-	28605195,28606055,28606760,28606950,28608290,28608477,28608707	28605933,28606236,28606855,28607077,28608388,28608603,28608920	0.973684
right_lobe_of_liver2_female_adult_53_years	chr4	69166628	69166631	69166630	+	High_confidence	12	19	25	1.028015	3.843856	chr4	69166504	69166830	LTR|ERVL|MER21B	+	chr4	69166588	69171282	STRG.15927.1	+	69166588	69171282	0.680000
right_lobe_of_liver2_female_adult_53_years	chr11	59040935	59040962	59040941	+	High_confidence	9	10	40	1.644823	4.512815	chr11	59040636	59041061	LTR|ERV1|MER57A1	+	chr11	59040925	59050971	STRG.38163.4	+	59040925,59042694,59043499,59049716,59050121,59050556	59041186,59042814,59043607,59049843,59050299,59050971	0.925000
right_lobe_of_liver2_female_adult_53_years	chr2	230520765	230520788	230520765	-	High_confidence	10	10	16	0.657929	3.506891	chr2	230520655	230521096	LTR|ERV1|LTR44	-	chr2	230519798	230520744	STRG.10994.1	-	230519798	230520744	0.812500
right_lobe_of_liver2_female_adult_53_years	chr5	34918368	34918378	34918377	+	RAMPAGE_only	8	9	13	0.534568	2.815072	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	1.000000
right_lobe_of_liver2_female_adult_53_years	chr2	200588166	200588177	200588166	+	High_confidence	10	11	23	0.945773	3.913977	chr2	200587906	200588390	LINE|L2|L2a	-	chr2	200588173	200603297	AOX1|ENST00000454629.1	+	200588173,200593145,200595271,200597396,200599619,200602283,200603266	200588270,200593203,200595368,200597505,200599746,200602345,200603297	0.782609
right_lobe_of_liver2_female_adult_53_years	chr5	32193651	32193652	32193651	-	RAMPAGE_only	7	7	8	0.328965	2.521641	chr5	32193443	32193647	LINE|L1|L1MB8	-	chr5	32190211	32190459	STRG.18081.1	-	32190211	32190459	0.625000
right_lobe_of_liver2_female_adult_53_years	chr1	43247839	43247883	43247866	-	High_confidence	4	4	17	0.699050	3.875000	chr1	43247136	43247843	LTR|ERV1|LOR1-int	-	chr1	43186757	43248124	STRG.1030.2	-	43186757,43206345,43215265,43247759	43194949,43206392,43215393,43248124	0.647059
right_lobe_of_liver2_female_adult_53_years	chr10	102368772	102368820	102368819	+	RAMPAGE_only	2	2	8	0.328965	2.750000	chr10	102368824	102368910	SINE|MIR|MIRc	+	chr10	102245539	102382698	STRG.36401.2	+	102245539,102258928,102260049,102344050,102351255,102351842,102352457,102353599,102358038,102358505,102359269,102360183,102361021,102361717,102362474,102363255,102363709,102365396,102366382,102367084,102367477,102368217,102368738,102369210,102369710,102369860,102370173,102370383,102370706,102375358,102376271,102376559,102376934,102379283,102379520,102379852,102380248,102380505,102381126,102382055	102245781,102259034,102260116,102344182,102351374,102351951,102352518,102353654,102358186,102358729,102359435,102360395,102361120,102361912,102362664,102363396,102363798,102365599,102366506,102367210,102367560,102368454,102368832,102369387,102369775,102369984,102370245,102370478,102370860,102375584,102376432,102376800,102377128,102379434,102379651,102379954,102380362,102380686,102381255,102382698	1.000000
right_lobe_of_liver2_female_adult_53_years	chr14	94384375	94384383	94384379	-	RAMPAGE_only	2	2	7	0.287844	2.584963	chr14	94384378	94384501	DNA|hAT-Charlie|MER102c	-	chr14	94383628	94390635	SERPINA1|ENST00000555289.5	-	94383628,94384033,94388559,94388800,94390456	94383647,94384130,94388663,94389010,94390635	0.571429
right_lobe_of_liver2_female_adult_53_years	chrX	48589988	48590030	48590029	+	High_confidence	45	46	191	7.854032	5.870663	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48590041	48599682	STRG.59723.6	+	48590041,48597957,48598716,48599352,48599586	48590287,48598037,48598957,48599462,48599682	0.958115
right_lobe_of_liver2_female_adult_53_years	chr10	92111686	92111691	92111690	-	High_confidence	15	17	31	1.274738	3.719903	chr10	92111553	92111835	LINE|L1|L1MB7	+	chr10	92046691	92111678	STRG.36047.3	-	92046691,92081319,92091829,92111075,92111471	92052439,92081501,92091944,92111194,92111678	0.967742
right_lobe_of_liver2_female_adult_53_years	chr10	89888929	89888930	89888929	+	RAMPAGE_only	5	6	6	0.246724	2.584963	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.833333
right_lobe_of_liver2_female_adult_53_years	chr16	48353034	48353036	48353035	+	RAMPAGE_only	12	22	25	1.028015	4.168296	chr16	48352977	48353104	SINE|MIR|MIRb	+	chr16	48244387	48362737	STRG.50166.3	+	48244387,48252130,48256609,48258617,48261423,48262777,48270015,48277337,48296014,48299661,48303171,48334215,48347506,48348099,48351580,48361853	48244621,48252365,48256741,48258740,48261587,48262872,48270274,48277479,48296165,48299788,48303305,48334358,48347714,48348290,48361759,48362737	0.960000
right_lobe_of_liver2_female_adult_53_years	chr12	26832738	26832805	26832779	-	High_confidence	15	18	55	2.261632	4.972209	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.927273
right_lobe_of_liver2_female_adult_53_years	chr4	73383643	73383654	73383643	+	RAMPAGE_only	2	2	8	0.328965	2.750000	chr4	73382825	73383876	LINE|L1|L1MC1	-	chr4	73397113	73409457	ALB|ENST00000441319.5	+	73397113,73404368,73405115,73406628,73408593,73409354	73397160,73404406,73405173,73406761,73408805,73409457	1.000000
right_lobe_of_liver2_female_adult_53_years	chr7	45690595	45690596	45690595	+	High_confidence	405	406	566	23.274251	7.048019	chr7	45690403	45690618	LTR|ERVL|LTR33	-	chr7	45690542	45723077	STRG.26366.1	+	45690542,45703375,45703599,45704517,45708349,45710527,45713692	45692149,45703492,45703746,45704616,45708464,45710652,45723077	0.934629
right_lobe_of_liver2_female_adult_53_years	chr2	230513289	230513305	230513304	-	High_confidence	35	38	83	3.413009	5.232688	chr2	230513152	230513502	LTR|ERV1|LTR44	-	chr2	230508990	230513532	STRG.10984.3	-	230508990,230513077	230510339,230513532	0.602410
right_lobe_of_liver2_female_adult_53_years	chr10	123162644	123162678	123162644	+	RAMPAGE_only	2	2	7	0.287844	2.521641	chr10	123162608	123162659	DNA|hAT-Ac|OldhAT1	-	chr10	123154276	123170467	BUB3|ENST00000368865.8	+	123154276,123154917,123155657,123157728,123160406,123162235,123162611,123163819	123154485,123155112,123155727,123157880,123160565,123162413,123162828,123170467	1.000000
right_lobe_of_liver2_female_adult_53_years	chr17	65134301	65134308	65134307	+	RAMPAGE_only	3	3	8	0.328965	2.521641	chr17	65134307	65134339	LTR|ERVL-MaLR|MLT1M	-	chr17	65137337	65210662	RGS9|NM_001165933.1	+	65137337,65153421,65158294,65160232,65160535,65160850,65163012,65168199,65177731,65189285,65190174,65193542,65197125,65201992,65204162,65207921,65210487	65137597,65153518,65158345,65160339,65160587,65160909,65163089,65168281,65177794,65189315,65190236,65193656,65197241,65202080,65204301,65208007,65210662	0.750000
right_lobe_of_liver2_female_adult_53_years	chr5	43583494	43583527	43583526	-	RAMPAGE_only	2	2	6	0.246724	2.584963	chr5	43583213	43583828	LTR|ERV1|MER39B	-	chr5	43571593	43603104	NNT-AS1|ENST00000513560.6	-	43571593,43583466,43602777	43575935,43583566,43603104	1.000000
right_lobe_of_liver2_female_adult_53_years	chr10	5968894	5968924	5968923	-	RAMPAGE_only	11	11	48	1.973788	5.293296	chr10	5968507	5969013	LINE|L1|L1MCc	-	chr10	5960394	5977214	IL15RA|ENST00000453922.1	-	5960394,5963742,5966144,5976948	5960567,5963838,5966339,5977214	0.583333
right_lobe_of_liver2_female_adult_53_years	chr9	109479044	109479102	109479065	-	High_confidence	11	18	73	3.001803	5.398956	chr9	109479015	109479587	LINE|L1|L1MB4	-	chr9	109375699	109479092	STRG.33506.2	-	109375699,109381651,109382301,109383422,109389232,109391137,109391470,109404447,109406461,109408320,109409998,109410228,109420423,109426949,109428620,109433072,109436882,109438113,109445239,109448810,109454495,109457172,109457291,109463296,109478808	109379633,109381787,109382447,109383551,109389379,109391199,109391561,109404608,109406618,109408377,109410076,109410415,109420600,109427122,109428684,109433161,109436970,109438234,109445292,109448855,109454574,109457215,109457399,109463451,109479092	0.890411
right_lobe_of_liver2_female_adult_53_years	chr2	26243214	26243223	26243214	+	High_confidence	2	2	8	0.328965	3.000000	chr2	26243090	26243217	SINE|MIR|MIR3	-	chr2	26243169	26278620	HADHB|ENST00000448743.5	+	26243169,26254246,26254429,26263379,26269952,26273650,26277072,26278613	26243269,26254318,26254474,26263479,26269997,26273750,26277160,26278620	0.875000
right_lobe_of_liver2_female_adult_53_years	chr4	119217578	119217626	119217578	+	RAMPAGE_only	3	3	10	0.411206	2.921928	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212740	119239341	USP53|ENST00000507597.5	+	119212740,119217549,119235289,119239217	119212873,119217673,119235411,119239341	0.500000
right_lobe_of_liver2_female_adult_53_years	chr4	69051428	69051431	69051428	+	High_confidence	3	3	7	0.287844	2.521641	chr4	69051337	69051715	LTR|ERV1|Harlequin-int	+	chr4	69051475	69112572	UGT2B7|ENST00000509763.1	+	69051475,69089471,69098539,69102806,69107174,69112456	69051602,69089603,69098688,69102938,69107262,69112572	0.571429
right_lobe_of_liver2_female_adult_53_years	chr7	40046019	40046020	40046019	+	High_confidence	7	7	7	0.287844	2.807355	chr7	40046066	40046260	LINE|L1|L1PA17	+	chr7	40045929	40067973	CDK13|ENST00000642592.1	+	40045929,40047820,40062825,40063022,40067259	40046025,40047877,40062927,40063100,40067973	0.571429
right_lobe_of_liver2_female_adult_53_years	chr1	147173219	147173226	147173219	+	High_confidence	3	3	7	0.287844	2.584963	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.857143
right_lobe_of_liver2_female_adult_53_years	chr8	143039256	143039298	143039284	+	High_confidence	3	3	15	0.616809	3.456565	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039294	143059942	C8orf31|ENST00000519775.2	+	143039294,143047678,143049208,143059652	143039569,143047814,143049298,143059942	0.600000
right_lobe_of_liver2_female_adult_53_years	chr3	57267742	57267773	57267772	+	RAMPAGE_only	7	8	30	1.233618	4.254196	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.933333
right_lobe_of_liver2_female_adult_53_years	chr1	43250373	43250437	43250373	-	High_confidence	31	35	164	6.743776	6.421593	chr1	43249744	43250419	LTR|ERV1|LOR1-int	-	chr1	43194683	43250391	EBNA1BP2|ENST00000474566.1	-	43194683,43206345,43211449,43215265,43250218	43194949,43206392,43211567,43215393,43250391	0.542683
right_lobe_of_liver2_female_adult_53_years	chr22	46171258	46171301	46171300	+	RAMPAGE_only	9	9	37	1.521462	4.957854	chr22	46171297	46171902	LINE|L2|L2a	-	chr22	46176747	46235403	PPARA|ENST00000402126.1	+	46176747,46198344,46215172,46218262,46219811,46231791,46235132	46176836,46198591,46215333,46218401,46220014,46232239,46235403	0.594595
right_lobe_of_liver2_female_adult_53_years	chr1	12572738	12572752	12572738	-	RAMPAGE_only	8	8	24	0.986894	4.277613	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.916667
right_lobe_of_liver2_female_adult_53_years	chr3	149207836	149207867	149207836	-	High_confidence	2	2	12	0.493447	3.277613	chr3	149207702	149207880	DNA|hAT-Charlie|MER117	-	chr3	149186065	149207623	CP|ENST00000489736.5	-	149186065,149188051,149198366,149199711,149202101,149206167,149207362	149186732,149188202,149198578,149199864,149202241,149206339,149207623	0.833333
right_lobe_of_liver2_female_adult_53_years	chr1	53889337	53889365	53889364	-	High_confidence	3	3	9	0.370085	3.000000	chr1	53889348	53889564	SINE|MIR|MIRb	+	chr1	53851718	53889733	YIPF1|ENST00000464950.6	-	53851718,53855000,53860055,53866199,53866757,53871371,53878314,53878641,53883112,53888906,53889712	53852270,53855051,53860153,53866382,53866924,53871488,53878402,53878722,53883276,53888986,53889733	0.888889
right_lobe_of_liver2_female_adult_53_years	chr20	2301382	2301423	2301401	-	RAMPAGE_only	8	8	37	1.521462	4.105969	chr20	2301329	2301448	SINE|MIR|MIR3	+	chr20	2295924	2297268	STRG.56220.1	-	2295924,2297191	2296494,2297268	0.864865
right_lobe_of_liver2_female_adult_53_years	chr6	44126632	44126633	44126632	+	High_confidence	210	212	277	11.390402	6.299284	chr6	44126578	44126686	LINE|CR1|X7A_LINE	-	chr6	44126627	44140328	STRG.22776.2	+	44126627,44126797,44134560,44135016,44135327,44136348,44138479,44139466,44139707,44140251	44126715,44127141,44134743,44135096,44135366,44136439,44138517,44139609,44139759,44140328	0.967509
right_lobe_of_liver2_female_adult_53_years	chr12	31447592	31447612	31447611	-	RAMPAGE_only	4	4	9	0.370085	2.750000	chr12	31447606	31447734	LINE|L1|X9_LINE	+	chr12	31424568	31426751	DENND5B|ENST00000537061.1	-	31424568,31426292	31424687,31426751	0.777778
right_lobe_of_liver2_female_adult_53_years	chrX	19349980	19350041	19350008	+	RAMPAGE_only	12	12	50	2.056029	4.741468	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19352828	19355445	PDHA1|ENST00000479146.1	+	19352828,19354490,19355348	19353173,19354583,19355445	0.700000
right_lobe_of_liver2_female_adult_53_years	chr15	100345506	100345536	100345533	-	High_confidence	15	16	68	2.796200	5.348277	chr15	100345381	100345814	LTR|ERVL-MaLR|MLT1J	+	chr15	100344165	100345764	STRG.49282.1	-	100344165	100345764	0.544118
right_lobe_of_liver2_female_adult_53_years	chr1	153967486	153967512	153967486	+	High_confidence	12	14	63	2.590597	4.850396	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.746032
right_lobe_of_liver2_female_adult_53_years	chr13	40350410	40350446	40350410	-	High_confidence	18	19	46	1.891547	4.905692	chr13	40350403	40350604	SINE|MIR|MIR3	+	chr13	40343666	40350399	STRG.43616.1	-	40343666,40350108	40344205,40350399	0.739130
right_lobe_of_liver2_female_adult_53_years	chr19	571754	571774	571754	-	High_confidence	7	10	20	0.822412	4.084184	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.900000
right_lobe_of_liver2_female_adult_53_years	chr3	146222578	146222625	146222578	+	High_confidence	7	7	33	1.356979	4.750000	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146222892	146223097	STRG.13771.1	+	146222892	146223097	0.515152
right_lobe_of_liver2_female_adult_53_years	chr2	201166365	201166367	201166365	+	RAMPAGE_only	3	6	7	0.287844	2.807355	chr2	201165587	201166984	Retroposon|SVA|SVA_A	-	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	1.000000
right_lobe_of_liver2_female_adult_53_years	chr4	39515071	39515086	39515085	-	RAMPAGE_only	5	5	9	0.370085	2.500000	chr4	39514983	39515137	SINE|Alu|AluJb	-	chr4	39498787	39526557	UGDH|ENST00000506179.5	-	39498787,39503874,39504416,39505236,39505617,39508565,39509759,39510352,39510660,39514082,39521350,39526383	39500253,39503985,39504508,39505370,39505748,39508660,39509907,39510550,39510861,39514184,39521519,39526557	0.777778
right_lobe_of_liver2_female_adult_53_years	chr10	133514285	133514314	133514304	-	RAMPAGE_only	10	11	41	1.685944	5.162430	chr10	133514136	133514490	LTR|ERVL-MaLR|THE1B	-	chr10	133472448	133473396	STRG.37017.2	-	133472448	133473396	0.731707
right_lobe_of_liver2_female_adult_53_years	chr12	883776	883829	883828	+	RAMPAGE_only	9	11	36	1.480341	4.461320	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	862234	911300	STRG.40277.4	+	862234,871264,878211,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846,908474	862270,871348,878361,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,908034,911300	1.000000
right_lobe_of_liver2_female_adult_53_years	chr4	154571315	154571602	154571315	+	RAMPAGE_only	425	512	1934	79.527212	6.700539	chr4	154571221	154571487	SINE|Alu|AluSx4	+	chr4	154562979	154572763	FGB|NM_005141.4	+	154562979,154565807,154566488,154567592,154568380,154569181,154569513,154570418	154563132,154565999,154566672,154567820,154568494,154569307,154569799,154572763	0.999483
right_lobe_of_liver2_female_adult_53_years	chr7	139758603	139758646	139758603	-	RAMPAGE_only	3	3	18	0.740171	3.794653	chr7	139758459	139758816	DNA|hAT-Charlie|MER1B	+	chr7	139561569	139777718	HIPK2|ENST00000406875.7	-	139561569,139575127,139583816,139596716,139600416,139604080,139613201,139614285,139620400,139626600,139628952,139631164,139631601,139715931,139777604	139573397,139575288,139584064,139596998,139600596,139604223,139613323,139614493,139620563,139626785,139629039,139631284,139631725,139717015,139777718	0.944444
right_lobe_of_liver2_female_adult_53_years	chrX	20204040	20204095	20204049	-	RAMPAGE_only	5	5	16	0.657929	3.452820	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	167966288	167966296	167966295	+	RAMPAGE_only	27	31	63	2.590597	4.709434	chr1	167966281	167966502	DNA|hAT-Charlie|MER30	+	chr1	167968489	167991339	DCAF6|ENST00000491067.1	+	167968489,167969203,167974829,167987494,167991203	167968533,167969259,167975015,167987608,167991339	0.603175
right_lobe_of_liver2_female_adult_53_years	chr8	143558019	143558020	143558019	+	High_confidence	6	6	6	0.246724	2.584963	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.833333
right_lobe_of_liver2_female_adult_53_years	chr11	119046420	119046443	119046442	-	RAMPAGE_only	3	3	13	0.534568	2.625815	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.923077
right_lobe_of_liver2_female_adult_53_years	chr11	123061128	123061328	123061322	-	High_confidence	72	79	499	20.519172	6.124150	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.953908
right_lobe_of_liver2_female_adult_53_years	chr12	7137011	7137109	7137108	+	RAMPAGE_only	5	5	31	1.274738	4.220168	chr12	7137127	7137213	SINE|MIR|MIR1_Amn	+	chr12	7138681	7143198	CLSTN3|ENST00000544584.1	+	7138681,7141241,7142085,7142868,7143162	7138816,7141404,7142139,7143026,7143198	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	78223618	78223687	78223618	+	RAMPAGE_only	4	4	25	1.028015	4.133661	chr1	78223537	78223690	LINE|L2|L2b	-	chr1	78229598	78293890	MGC27382|ENST00000436742.5	+	78229598,78250183,78251493,78292479,78293078,78293590	78229729,78251010,78251877,78292631,78293277,78293890	0.640000
right_lobe_of_liver2_female_adult_53_years	chr1	92847195	92847224	92847195	-	RAMPAGE_only	3	4	13	0.534568	3.022055	chr1	92847043	92847171	LINE|L1|L1ME4c	-	chr1	92842159	92877150	FAM69A|ENST00000613047.4	-	92842159,92847182,92850847,92876295,92876960	92844195,92847359,92850955,92876430,92877150	0.923077
right_lobe_of_liver2_female_adult_53_years	chr19	15829094	15829095	15829094	+	High_confidence	6	6	6	0.246724	2.584963	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	65229348	65229665	65229350	+	RAMPAGE_only	27	46	259	10.650232	5.343887	chr1	65229268	65229547	SINE|Alu|AluJr	+	chr1	65148202	65232136	AK4|ENST00000327299.7	+	65148202,65190709,65218753,65224751,65226062	65148552,65190829,65218926,65224870,65232136	0.996139
right_lobe_of_liver2_female_adult_53_years	chr6	151616823	151616826	151616825	-	High_confidence	41	55	61	2.508356	5.348394	chr6	151616642	151616992	LTR|ERVL-MaLR|MLT1A0	-	chr6	151610471	151616815	STRG.25123.1	-	151610471,151616720	151611272,151616815	0.688525
right_lobe_of_liver2_female_adult_53_years	chr15	58528573	58528586	58528582	+	High_confidence	7	7	22	0.904653	3.568084	chr15	58528515	58528670	SINE|Alu|AluJb	-	chr15	58528481	58568873	STRG.48259.4	+	58528481,58538332,58541784,58542533,58545741,58548329,58560863,58563504,58568715	58528959,58538517,58541967,58542651,58545975,58548572,58560981,58563723,58568873	0.954545
right_lobe_of_liver2_female_adult_53_years	chr20	57566949	57566986	57566967	+	RAMPAGE_only	2	2	11	0.452326	3.121928	chr20	57566934	57566981	SINE|MIR|MIRb	-	chr20	57561079	57568112	PCK1|ENST00000319441.5	+	57561079,57561371,57562070,57562695,57563027,57563564,57564168,57564481,57565039,57565349	57561203,57561635,57562252,57562899,57563215,57563727,57564393,57564613,57565135,57568112	0.818182
right_lobe_of_liver2_female_adult_53_years	chr1	54243234	54243250	54243234	-	RAMPAGE_only	3	3	8	0.328965	2.750000	chr1	54243091	54243229	SINE|MIR|MIR3	-	chr1	54226516	54228834	SSBP3|ENST00000528930.5	-	54226516,54228254,54228448,54228747	54227160,54228356,54228477,54228834	1.000000
right_lobe_of_liver2_female_adult_53_years	chr7	103353933	103353957	103353956	+	High_confidence	9	11	32	1.315859	4.086897	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103368208	STRG.27511.5	+	103353918,103354867,103355693,103361956,103362685,103363343,103364142,103366075,103367412,103367712	103353958,103354949,103355793,103362088,103362758,103363439,103364307,103366163,103367615,103368208	1.000000
right_lobe_of_liver2_female_adult_53_years	chr6	88662711	88662727	88662726	+	High_confidence	5	5	12	0.493447	2.913977	chr6	88662592	88670501	LTR|ERV1|HERVE-int	+	chr6	88662467	88670909	STRG.23591.1	+	88662467,88664476	88662858,88670909	0.916667
right_lobe_of_liver2_female_adult_53_years	chr17	58535634	58535642	58535641	-	RAMPAGE_only	4	4	13	0.534568	3.418296	chr17	58535378	58535602	LINE|CR1|L3	-	chr17	58520249	58532084	SEPT4|NM_080416.3	-	58520249,58520742,58520997,58521253,58521544,58521735,58521966,58525077,58525694,58526219,58526681,58531960	58520485,58520842,58521160,58521350,58521646,58521853,58522101,58525201,58525781,58526313,58526978,58532084	0.769231
right_lobe_of_liver2_female_adult_53_years	chr17	36002014	36002034	36002014	-	High_confidence	9	9	20	0.822412	3.616349	chr17	36001935	36002541	LTR|ERV1|MER50	-	chr17	35997581	36002038	CCL15|NM_032965.5	-	35997581,35998279,35998865,36001416	35997860,35998391,35998925,36002038	0.950000
right_lobe_of_liver2_female_adult_53_years	chr1	54867156	54867171	54867168	-	RAMPAGE_only	5	5	13	0.534568	3.251629	chr1	54867161	54867293	SINE|MIR|MIRb	+	chr1	54852366	54886836	DHCR24|ENST00000647585.1	-	54852366,54853433,54854036,54865302,54871349,54875092,54875941,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54883773,54886836	0.769231
right_lobe_of_liver2_female_adult_53_years	chr21	25606462	25606487	25606462	-	RAMPAGE_only	5	6	12	0.493447	3.418296	chr21	25606381	25606463	LINE|RTE-BovB|MamRTE1	+	chr21	25592811	25607484	MRPL39|ENST00000419219.1	-	25592811,25593892,25597301,25599798,25601367,25603795,25606448,25607402	25592965,25593958,25597414,25599836,25601467,25603935,25606655,25607484	0.916667
right_lobe_of_liver2_female_adult_53_years	chr2	46904995	46905013	46904995	-	RAMPAGE_only	2	3	8	0.328965	2.521641	chr2	46904869	46905220	LTR|ERVL-MaLR|THE1A	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.875000
right_lobe_of_liver2_female_adult_53_years	chr4	73104198	73104245	73104198	-	High_confidence	60	61	229	9.416614	6.300150	chr4	73103951	73104200	DNA|hAT-Charlie|Charlie2b	-	chr4	73077368	73104343	STRG.16011.7	-	73077368,73078641,73085248,73090666,73094078,73097116,73098072,73102375,73104002	73077533,73078890,73085446,73092300,73094228,73097272,73098520,73102547,73104343	0.982533
right_lobe_of_liver2_female_adult_53_years	chr14	102235458	102235459	102235458	-	High_confidence	4	4	7	0.287844	2.584963	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.857143
right_lobe_of_liver2_female_adult_53_years	chr2	181954491	181954526	181954525	+	High_confidence	18	21	83	3.413009	5.229427	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954530	182117685	PPP1R1C|ENST00000490645.5	+	181954530,181962133,181975218,182061441,182063730,182117206	181954634,181962196,181975264,182061479,182063791,182117685	0.734940
right_lobe_of_liver2_female_adult_53_years	chr6	141877575	141877592	141877591	+	High_confidence	6	7	13	0.534568	3.188722	chr6	141877569	141877653	LTR|ERV1|LTR24B	-	chr6	141877618	141878764	STRG.24660.1	+	141877618,141878711	141877977,141878764	0.846154
right_lobe_of_liver2_female_adult_53_years	chr3	177896696	177896697	177896696	+	RAMPAGE_only	5	5	7	0.287844	2.521641	chr3	177896609	177898078	LINE|L1|L1M3c	+	chr3	177816864	177899224	LINC02015|ENST00000436078.5	+	177816864,177895612,177896563	177816996,177895776,177899224	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	27370605	27370627	27370605	-	RAMPAGE_only	5	5	16	0.657929	3.373557	chr1	27370456	27370599	SINE|MIR|MIR1_Amn	-	chr1	27369109	27374824	FCN3|NM_173452.1	-	27369109,27370595,27370842,27373135,27373964,27374355,27374727	27369477,27370730,27370972,27373263,27374009,27374451,27374824	0.937500
right_lobe_of_liver2_female_adult_53_years	chr4	153566236	153566250	153566236	+	High_confidence	3	3	10	0.411206	3.121928	chr4	153566137	153566433	SINE|Alu|AluY	-	chr4	153566421	153582408	STRG.17246.6	+	153566421,153580825,153581406	153566490,153580903,153582408	0.600000
right_lobe_of_liver2_female_adult_53_years	chr11	67022704	67022719	67022718	+	High_confidence	14	14	34	1.398100	4.712319	chr11	67022615	67022807	SINE|MIR|MIRb	+	chr11	67022718	67050863	SYT12|NM_001318773.1	+	67022718,67030121,67030434,67034644,67039810,67043637,67044592,67045743,67048583	67022925,67030178,67030559,67034838,67040203,67043853,67044713,67045877,67050863	1.000000
right_lobe_of_liver2_female_adult_53_years	chr9	129488730	129488905	129488856	+	High_confidence	139	140	852	35.034739	6.124543	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.969484
right_lobe_of_liver2_female_adult_53_years	chr1	78473312	78473345	78473312	+	High_confidence	35	36	99	4.070938	4.989461	chr1	78473085	78473339	DNA|hAT-Tip100|MER45B	-	chr1	78473327	78539749	STRG.1954.2	+	78473327,78492671,78536405	78473422,78493541,78539749	0.919192
right_lobe_of_liver2_female_adult_53_years	chr12	20822528	20822548	20822547	+	RAMPAGE_only	2	2	7	0.287844	2.584963	chr12	20822186	20822617	LTR|ERV1|LTR7	-	chr12	20815673	21090245	AC011604.2|ENST00000540229.1	+	20815673,20855027,20858438,20861016,20862411,20862755,20875234,20877771,20879435,20880854,20883417,20898435,20901349,21067318,21076451,21089907	20815822,20855169,20858571,20861138,20862558,20862854,20875477,20877936,20879631,20881020,20883602,20898500,20901467,21067383,21076569,21090245	0.714286
right_lobe_of_liver2_female_adult_53_years	chr10	106011435	106011499	106011435	+	High_confidence	85	85	354	14.556687	6.158379	chr10	106009563	106011791	LINE|L1|L1M1	-	chr10	106011447	106014162	STRG.36303.1	+	106011447,106013536	106011654,106014162	0.923729
right_lobe_of_liver2_female_adult_53_years	chr11	75731298	75731311	75731307	+	High_confidence	12	14	25	1.028015	3.943465	chr11	75731320	75731401	LINE|CR1|L3	+	chr11	75731002	75732958	MOGAT2|ENST00000624180.1	+	75731002	75732958	1.000000
right_lobe_of_liver2_female_adult_53_years	chr12	112506798	112506824	112506798	+	RAMPAGE_only	2	3	8	0.328965	3.000000	chr12	112506599	112506946	LTR|ERVL-MaLR|MLT1H	-	chr12	112418913	112509913	PTPN11|ENST00000351677.6	+	112418913,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486474,112488442,112489023,112502143,112504694,112505824	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504796,112509913	1.000000
right_lobe_of_liver2_female_adult_53_years	chr2	168921936	168922051	168922008	-	RAMPAGE_only	7	10	47	1.932668	3.609080	chr2	168921846	168922148	SINE|Alu|AluY	-	chr2	168920780	169031323	ABCB11|ENST00000263817.7	-	168920780,168924656,168927155,168930664,168932376,168935183,168936229,168944604,168944856,168957963,168964205,168968426,168969349,168970044,168971846,168973714,168976576,168979865,168986109,168990800,168993710,168995348,168996634,169013271,169014302,169016777,169018049,169031224	168923822,168924803,168927362,168930862,168932533,168935425,168936433,168944766,168944961,168958128,168964308,168968490,168969551,168970215,168972050,168973840,168976687,168979979,168986284,168990925,168993882,168995482,168996722,169013510,169014354,169016799,169018152,169031323	0.957447
right_lobe_of_liver2_female_adult_53_years	chr5	34244725	34244781	34244753	-	High_confidence	6	6	22	0.904653	4.061482	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.545455
right_lobe_of_liver2_female_adult_53_years	chr1	89127431	89127432	89127431	-	High_confidence	40	40	40	1.644823	4.634184	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89126994	89127689	STRG.2304.1	-	89126994	89127689	0.900000
right_lobe_of_liver2_female_adult_53_years	chr2	168559503	168559506	168559503	+	RAMPAGE_only	5	5	11	0.452326	3.095795	chr2	168559310	168559693	LTR|ERVL-MaLR|MLT1A0	-	chr2	168456248	168775134	CERS6|NM_203463.2	+	168456248,168547595,168561191,168630984,168691033,168694958,168715000,168717871,168765591,168769509	168456618,168547701,168561322,168631042,168691084,168695051,168715129,168717978,168765748,168775134	0.636364
right_lobe_of_liver2_female_adult_53_years	chr9	12784737	12784738	12784737	+	RAMPAGE_only	15	15	16	0.657929	3.773557	chr9	12783851	12785961	LINE|L1|L1MA3	-	chr9	12775020	12822131	LURAP1L|ENST00000319264.3	+	12775020,12821385	12776027,12822131	0.750000
right_lobe_of_liver2_female_adult_53_years	chr2	3536872	3536887	3536872	-	High_confidence	2	2	7	0.287844	2.807355	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	1.000000
right_lobe_of_liver2_female_adult_53_years	chr10	47555602	47555635	47555602	+	RAMPAGE_only	5	5	29	1.192497	4.323161	chr10	47555548	47555739	LINE|L2|L2	+	chr10	47563603	47569697	GLUD1P8|ENST00000585063.2	+	47563603,47567952,47569631	47563684,47568008,47569697	0.620690
right_lobe_of_liver2_female_adult_53_years	chr11	118241616	118241650	118241616	-	RAMPAGE_only	2	2	9	0.370085	3.000000	chr11	118241373	118241624	SINE|MIR|MIR	+	chr11	118229453	118252320	MPZL3|ENST00000446386.2	-	118229453,118233459,118235423,118240210,118252221	118229920,118233523,118235589,118240377,118252320	0.666667
right_lobe_of_liver2_female_adult_53_years	chr11	64242492	64242548	64242546	+	High_confidence	41	47	125	5.140073	5.602256	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.984000
right_lobe_of_liver2_female_adult_53_years	chr2	177499656	177499715	177499694	+	RAMPAGE_only	7	8	48	1.973788	5.095176	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.833333
right_lobe_of_liver2_female_adult_53_years	chr10	89556703	89556704	89556703	-	High_confidence	239	257	303	12.459537	6.336191	chr10	89556405	89557345	LTR|ERVL|MER21A	+	chr10	89462502	89556641	SLC16A12|ENST00000475682.1	-	89462502,89555881,89556523	89462624,89555981,89556641	0.597360
right_lobe_of_liver2_female_adult_53_years	chr19	44725180	44725187	44725180	-	RAMPAGE_only	23	23	56	2.302753	5.134336	chr19	44725104	44725160	SINE|MIR|MIR1_Amn	-	chr19	44632198	44718631	AC243964.2|ENST00000590796.1	-	44632198,44699083,44715949,44718449	44632619,44699177,44716081,44718631	0.678571
right_lobe_of_liver2_female_adult_53_years	chr2	134844425	134844446	134844434	+	High_confidence	3	3	14	0.575688	3.467720	chr2	134844348	134844776	LTR|ERVL|LTR16C	-	chr2	134844422	134902034	STRG.8419.3	+	134844422,134845232,134859260,134861968,134863394,134867578,134870964,134872468,134898340,134901797	134844471,134845277,134859357,134863054,134863631,134867672,134871060,134872641,134898439,134902034	0.857143
right_lobe_of_liver2_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	518	534	2317	95.276396	6.778268	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91146165	91179513	DCN|ENST00000546391.5	-	91146165,91151653,91153095,91178341,91179361	91146252,91151792,91153189,91178585,91179513	0.501511
right_lobe_of_liver2_female_adult_53_years	chr11	64620705	64620706	64620705	-	High_confidence	4	4	7	0.287844	2.521641	chr11	64620584	64620687	SINE|tRNA-Deu|AmnSINE2	-	chr11	64606267	64620371	STRG.38343.1	-	64606267,64620293	64608082,64620371	0.714286
right_lobe_of_liver2_female_adult_53_years	chr1	43211453	43211465	43211464	-	RAMPAGE_only	6	6	14	0.575688	3.392747	chr1	43211294	43211592	SINE|Alu|AluSc8	+	chr1	43186757	43248124	STRG.1030.2	-	43186757,43206345,43215265,43247759	43194949,43206392,43215393,43248124	0.785714
right_lobe_of_liver2_female_adult_53_years	chr1	241504047	241504082	241504052	-	RAMPAGE_only	6	7	30	1.233618	4.415061	chr1	241503964	241504054	SINE|MIR|MIRc	+	chr1	241497602	241519761	FH|ENST00000366560.3	-	241497602,241500436,241502442,241504041,241506002,241508602,241511966,241513602,241517181,241519590	241497970,241500590,241502570,241504245,241506168,241508785,241512143,241513713,241517316,241519761	0.900000
right_lobe_of_liver2_female_adult_53_years	chr1	196741535	196741582	196741535	+	RAMPAGE_only	2	4	16	0.657929	3.056565	chr1	196741215	196741581	LTR|ERVL-MaLR|THE1D	-	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.937500
right_lobe_of_liver2_female_adult_53_years	chr3	191261123	191261154	191261137	-	RAMPAGE_only	10	10	30	1.233618	4.137538	chr3	191260148	191261156	LTR|ERV1|LTR49-int	-	chr3	191213290	191234605	OSTN-AS1|NR_133663.1	-	191213290,191217069,191218815,191228714,191229765,191234571	191213340,191217179,191218936,191228782,191229897,191234605	0.533333
right_lobe_of_liver2_female_adult_53_years	chr6	8652234	8652275	8652274	+	High_confidence	1930	1957	4721	194.130283	6.105205	chr6	8652094	8652454	LTR|ERVL-MaLR|MLT1A	+	chr6	8652261	8653814	AL591485.1|ENST00000646741.1	+	8652261,8653544	8653136,8653814	0.960178
right_lobe_of_liver2_female_adult_53_years	chr10	103181326	103181329	103181326	-	RAMPAGE_only	2	2	7	0.287844	2.807355	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.857143
right_lobe_of_liver2_female_adult_53_years	chr10	94683540	94683616	94683590	+	High_confidence	10	10	53	2.179391	4.649406	chr10	94683574	94683628	DNA|hAT-Charlie|MER5B	+	chr10	94683620	94736190	CYP2C18|ENST00000285979.10	+	94683620,94687769,94688124,94694916,94706783,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94706960,94720537,94724533,94733438,94736190	0.962264
right_lobe_of_liver2_female_adult_53_years	chr6	53616975	53617081	53617008	-	High_confidence	210	230	755	31.046042	6.917857	chr6	53616804	53617217	LTR|ERVL-MaLR|MSTA	-	chr6	53561288	53617007	AL033397.1|ENST00000502390.5	-	53561288,53564749,53569422,53573199,53616885	53564420,53564889,53569605,53573275,53617007	0.643709
right_lobe_of_liver2_female_adult_53_years	chr18	26754103	26754158	26754103	-	High_confidence	106	107	204	8.388599	5.867473	chr18	26753863	26754158	SINE|Alu|AluSz	-	chr18	26747820	26754163	STRG.53608.2	-	26747820,26753638	26748159,26754163	0.950980
right_lobe_of_liver2_female_adult_53_years	chr4	48012933	48012936	48012935	-	High_confidence	3	4	7	0.287844	2.584963	chr4	48012591	48013262	LTR|ERV1|MER4-int	-	chr4	47935976	48012944	CNGA1|NM_000087.3	-	47935976,47940762,47942040,47943180,47943370,47949832,47951352,47952582,47981392,48010793,48012888	47937829,47940869,47942148,47943288,47943412,47949895,47951469,47952703,47981500,48010893,48012944	0.714286
right_lobe_of_liver2_female_adult_53_years	chr4	71803927	71803928	71803927	-	High_confidence	38	43	44	1.809306	5.007660	chr4	71803761	71803898	SINE|MIR|MIRc	-	chr4	71741692	71804041	GC|NM_001204307.1	-	71741692,71746150,71752517,71754410,71754977,71756711,71758041,71763407,71763803,71765431,71768300,71769330,71783960,71803925	71741870,71746205,71752650,71754508,71755107,71756914,71758171,71763502,71763936,71765643,71768433,71769400,71784054,71804041	0.977273
right_lobe_of_liver2_female_adult_53_years	chrX	31932452	31932495	31932494	-	RAMPAGE_only	16	16	57	2.343873	4.954240	chrX	31932463	31932747	SINE|Alu|AluSx1	+	chrX	31119227	32155469	DMD|NM_004013.2	-	31119227,31126641,31134101,31146290,31147274,31169442,31172347,31173538,31177931,31178668,31180369,31182737,31203960,31206581,31209497,31223046,31260954,31323597,31348555,31444480,31478105,31478982,31496787,31507280,31627672,31657989,31679374,31729630,31773959,31819974,31836717,31875187,31929595,31932079,31968338,32155370	31121930,31126673,31134194,31146414,31147518,31169601,31172413,31173604,31177970,31178805,31180481,31182904,31204118,31206667,31209699,31223121,31261016,31323658,31348634,31444627,31478374,31479103,31496944,31507453,31627862,31658144,31679586,31729748,31774192,31820083,31836819,31875373,31929745,31932227,31968514,32155469	0.912281
right_lobe_of_liver2_female_adult_53_years	chr10	68749239	68749258	68749239	+	RAMPAGE_only	4	4	10	0.411206	3.321928	chr10	68749287	68749410	LINE|L1|L1MB3	+	chr10	68721254	68791355	CCAR1|ENST00000540210.5	+	68721254,68722454,68736875,68737844,68740628,68742375,68747160,68747373,68749135,68749523,68753851,68754713,68755369,68757293,68761006,68765887,68771205,68772987,68786135,68786545,68787926,68788142,68789709,68791206	68721288,68722577,68737048,68737889,68740661,68742569,68747275,68747566,68749265,68749685,68754077,68754827,68755536,68757377,68761192,68766079,68771445,68773099,68786218,68786692,68788047,68788328,68789915,68791355	0.800000
right_lobe_of_liver2_female_adult_53_years	chr16	2757851	2757891	2757851	+	High_confidence	6	6	21	0.863532	4.037401	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.857143
right_lobe_of_liver2_female_adult_53_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	10	10	10	0.411206	3.121928	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
right_lobe_of_liver2_female_adult_53_years	chr13	77975521	77975554	77975521	-	High_confidence	14	14	36	1.480341	3.756207	chr13	77975208	77975612	LTR|ERV1|HERVE_a-int	-	chr13	77895480	77975529	EDNRB|ENST00000646948.1	-	77895480,77899858,77900520,77901057,77903155,77903494,77918090,77975346	77898334,77899967,77900654,77901207,77903360,77903607,77918624,77975529	0.916667
right_lobe_of_liver2_female_adult_53_years	chrX	73943913	73943942	73943941	+	High_confidence	3	4	10	0.411206	2.846439	chrX	73943785	73943965	SINE|MIR|MIRc	+	chrX	73944345	73944946	JPX|ENST00000453317.1	+	73944345,73944583	73944465,73944946	0.500000
right_lobe_of_liver2_female_adult_53_years	chr18	46087018	46087066	46087042	-	High_confidence	7	12	40	1.644823	4.734512	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.825000
right_lobe_of_liver2_female_adult_53_years	chr5	66690173	66690223	66690173	+	RAMPAGE_only	36	36	169	6.949379	5.794508	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66738030	66788705	MAST4|ENST00000478569.1	+	66738030,66759708,66783334,66788669	66738257,66759862,66783384,66788705	0.627219
right_lobe_of_liver2_female_adult_53_years	chr18	70335287	70335401	70335353	+	High_confidence	82	97	202	8.306358	4.613337	chr18	70335288	70335395	DNA|hAT-Charlie|Charlie24	-	chr18	70335438	70352459	LINC01909|ENST00000584919.1	+	70335438,70336057,70336321,70351978	70335506,70336140,70336504,70352459	0.935644
right_lobe_of_liver2_female_adult_53_years	chr6	53564783	53564831	53564809	-	RAMPAGE_only	4	4	18	0.740171	3.725481	chr6	53564734	53564890	SINE|MIR|MIRb	-	chr6	53561288	53573275	LOC101927136|NR_110840.1	-	53561288,53564749,53569422,53573199	53564420,53564889,53569605,53573275	1.000000
right_lobe_of_liver2_female_adult_53_years	chr7	106415632	106415647	106415646	+	High_confidence	71	74	147	6.044726	4.570160	chr7	106415365	106415701	LTR|ERV1|MER65B	-	chr7	106415615	106444042	STRG.27813.1	+	106415615	106444042	0.986395
right_lobe_of_liver2_female_adult_53_years	chr19	58306086	58306087	58306086	+	High_confidence	7	7	9	0.370085	2.725481	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.555556
right_lobe_of_liver2_female_adult_53_years	chr19	51354390	51354407	51354390	-	High_confidence	3	3	9	0.370085	3.000000	chr19	51354373	51354482	SINE|MIR|MIR3	-	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.777778
right_lobe_of_liver2_female_adult_53_years	chr1	179877343	179877369	179877343	-	High_confidence	3	3	12	0.493447	3.418296	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179839966	179877772	STRG.4195.2	-	179839966,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877772	1.000000
right_lobe_of_liver2_female_adult_53_years	chr10	35449700	35449735	35449714	+	RAMPAGE_only	3	3	11	0.452326	3.459432	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.727273
right_lobe_of_liver2_female_adult_53_years	chr14	21024292	21024312	21024311	+	High_confidence	4	4	16	0.657929	3.750000	chr14	21024322	21024505	SINE|MIR|MIR3	+	chr14	21024295	21029271	AL161668.4|ENST00000532213.2	+	21024295,21028445,21028940	21024344,21028534,21029271	0.812500
right_lobe_of_liver2_female_adult_53_years	chr14	104766952	104766953	104766952	-	High_confidence	111	142	155	6.373691	6.320023	chr14	104766824	104767423	LTR|ERV1|LTR71B	-	chr14	104747315	104766963	STRG.46809.2	-	104747315,104756405,104766842	104748773,104757420,104766963	0.819355
right_lobe_of_liver2_female_adult_53_years	chr13	110507419	110507480	110507434	+	High_confidence	4	5	32	1.315859	4.438067	chr13	110507382	110507519	LINE|RTE-X|L4_A_Mam	-	chr13	110507443	110512133	COL4A2|ENST00000463084.1	+	110507443,110507934,110511933	110507635,110508221,110512133	0.968750
right_lobe_of_liver2_female_adult_53_years	chr10	72355126	72355169	72355145	-	High_confidence	14	14	49	2.014909	4.680538	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
right_lobe_of_liver2_female_adult_53_years	chr6	151641299	151641317	151641299	+	RAMPAGE_only	5	5	20	0.822412	4.021928	chr6	151641159	151641564	LTR|ERVL-MaLR|MSTB	+	chr6	151656690	152061091	STRG.25141.1	+	151656690,151701874,151807842,151842596,151880654,151944172,152011655,152060990	151656763,151702005,151808364,151842787,151880771,151944508,152011794,152061091	0.550000
right_lobe_of_liver2_female_adult_53_years	chr3	188947224	188947237	188947236	+	High_confidence	14	15	25	1.028015	4.084963	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.560000
right_lobe_of_liver2_female_adult_53_years	chr1	229905811	229905827	229905821	-	High_confidence	16	16	38	1.562582	4.781036	chr1	229905660	229907247	LINE|L1|L1M5	+	chr1	229897075	229905799	STRG.5416.1	-	229897075,229905749	229897656,229905799	0.763158
right_lobe_of_liver2_female_adult_53_years	chr2	182030747	182030782	182030747	+	High_confidence	5	5	27	1.110256	4.403856	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.888889
right_lobe_of_liver2_female_adult_53_years	chr17	82081606	82081689	82081606	-	High_confidence	14	15	68	2.796200	5.058365	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.647059
right_lobe_of_liver2_female_adult_53_years	chr12	12927723	12927741	12927733	+	High_confidence	43	45	93	3.824214	6.034219	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.580645
right_lobe_of_liver2_female_adult_53_years	chr1	214312654	214312655	214312654	+	RAMPAGE_only	9	9	14	0.575688	3.546594	chr1	214312302	214313119	LINE|L2|L2a	-	chr1	214281232	214337131	SMYD2|ENST00000366957.9	+	214281232,214305186,214314761,214318078,214318858,214324640,214327621,214330167,214330949,214332017,214334199,214336703	214281427,214305250,214314872,214318139,214318983,214324708,214327724,214330278,214331070,214332192,214334308,214337131	0.928571
right_lobe_of_liver2_female_adult_53_years	chr11	65438629	65438922	65438714	+	RAMPAGE_only	64	66	373	15.337978	5.829182	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.989276
right_lobe_of_liver2_female_adult_53_years	chr20	62776856	62776858	62776856	-	High_confidence	16	31	38	1.562582	4.736324	chr20	62776675	62776888	LTR|ERVL|LTR16A	-	chr20	62774120	62776856	LINC00659|NR_046225.1	-	62774120,62775314,62776805	62774569,62775386,62776856	0.500000
right_lobe_of_liver2_female_adult_53_years	chr4	73508891	73508925	73508891	+	High_confidence	2	2	6	0.246724	2.584963	chr4	73508887	73509062	SINE|MIR|MIRb	-	chr4	73508802	73528533	LOC728040|NR_046377.1	+	73508802,73509674,73510202,73528412	73509252,73509725,73510343,73528533	0.666667
right_lobe_of_liver2_female_adult_53_years	chr2	118143019	118143020	118143019	-	RAMPAGE_only	5	8	8	0.328965	3.000000	chr2	118137000	118143020	LINE|L1|L1PA2	-	chr2	118132127	118186386	THORLNC|ENST00000414886.5	-	118132127,118176764,118183086,118186230	118132372,118176905,118183322,118186386	1.000000
right_lobe_of_liver2_female_adult_53_years	chr20	8600698	8600742	8600741	+	High_confidence	3	3	11	0.452326	3.095795	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600725	8788523	PLCB1|ENST00000626966.2	+	8600725,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8600781,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788523	0.909091
right_lobe_of_liver2_female_adult_53_years	chr9	34649471	34649511	34649510	+	High_confidence	4	4	12	0.493447	3.418296	chr9	34649448	34649570	LINE|RTE-BovB|MamRTE1	-	chr9	34648921	34650583	GALT|ENST00000488412.2	+	34648921,34650368	34649564,34650583	0.750000
right_lobe_of_liver2_female_adult_53_years	chr4	69519842	69519852	69519851	-	RAMPAGE_only	9	12	29	1.192497	3.810081	chr4	69519504	69519916	LTR|ERV1|MER4A	+	chr4	69480164	69526014	UGT2B4|NM_001297616.1	-	69480164,69485207,69486608,69489438,69493692,69495140,69525686	69480910,69485427,69486696,69489570,69493841,69495410,69526014	0.896552
right_lobe_of_liver2_female_adult_53_years	chr7	43881912	43881956	43881912	-	RAMPAGE_only	5	6	24	0.986894	3.851227	chr7	43881785	43881943	LINE|L2|L2	+	chr7	43875912	43889634	URGCP|ENST00000336086.10	-	43875912,43881658,43881906,43887414	43879260,43881697,43881957,43889634	1.000000
right_lobe_of_liver2_female_adult_53_years	chr2	231047507	231047664	231047657	+	RAMPAGE_only	28	32	199	8.182996	4.214517	chr2	231047505	231047693	DNA|hAT-Charlie|MER20	+	chr2	231041106	231049719	C2orf72|ENST00000463834.1	+	231041106,231046881	231041409,231049719	0.984925
right_lobe_of_liver2_female_adult_53_years	chr2	200889268	200889338	200889279	-	High_confidence	9	9	39	1.603703	4.826875	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889276	PPIL3|ENST00000465823.5	-	200870955,200876918,200881420,200885697,200887612,200888955	200871521,200877037,200881488,200885772,200887685,200889276	0.820513
right_lobe_of_liver2_female_adult_53_years	chr12	7095629	7095861	7095860	-	RAMPAGE_only	72	75	298	12.253934	5.471546	chr12	7095641	7095886	SINE|MIR|MIRb	+	chr12	7094553	7109273	C1RL|ENST00000266542.8	-	7094553,7099685,7099900,7101897,7108250,7109109	7097163,7099760,7100026,7102087,7108479,7109273	1.000000
right_lobe_of_liver2_female_adult_53_years	chr21	31658131	31658156	31658142	-	RAMPAGE_only	8	8	29	1.192497	4.396292	chr21	31658107	31658234	LINE|CR1|L3	-	chr21	31653592	31659500	AP000253.1|ENST00000449339.1	-	31653592,31657933,31659396	31655427,31658227,31659500	0.862069
right_lobe_of_liver2_female_adult_53_years	chr7	155243716	155243720	155243716	-	RAMPAGE_only	3	5	11	0.452326	2.721928	chr7	155240897	155243674	LTR|ERVK|HERVK9-int	-	chr7	155238152	155254173	STRG.28760.3	-	155238152,155254015	155253532,155254173	0.909091
right_lobe_of_liver2_female_adult_53_years	chr5	66690069	66690117	66690102	+	RAMPAGE_only	4	8	35	1.439220	4.185867	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66738030	66788705	MAST4|ENST00000478569.1	+	66738030,66759708,66783334,66788669	66738257,66759862,66783384,66788705	0.742857
right_lobe_of_liver2_female_adult_53_years	chr2	27501222	27501223	27501222	+	RAMPAGE_only	9	11	14	0.575688	3.521641	chr2	27501264	27501351	LINE|CR1|CR1_Mam	+	chr2	27496882	27506891	GCKR|ENST00000472290.1	+	27496882,27497243,27497561,27498254,27498723,27499141,27499396,27501134,27503513,27505717,27506480	27496964,27497399,27497630,27498323,27498797,27499208,27499450,27501229,27503619,27505836,27506891	0.928571
right_lobe_of_liver2_female_adult_53_years	chr7	134527596	134527597	134527596	+	High_confidence	9668	9831	11369	467.499934	7.402484	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.993843
right_lobe_of_liver2_female_adult_53_years	chrX	150777449	150777473	150777449	-	RAMPAGE_only	12	12	19	0.781291	3.836592	chrX	150776742	150777409	LTR|ERV1|MER4A	-	chrX	150768976	150814864	CD99L2|ENST00000634795.1	-	150768976,150770303,150771804,150776173,150777443,150793690,150795205,150795417,150814861	150769101,150770369,150771822,150776293,150777482,150793756,150795289,150795486,150814864	0.736842
right_lobe_of_liver2_female_adult_53_years	chr12	109112902	109112928	109112908	+	RAMPAGE_only	4	5	20	0.822412	4.021928	chr12	109112836	109113146	DNA|hAT-Charlie|MER58B	-	chr12	109111217	109125594	AC007637.1|ENST00000541704.2	+	109111217,109113094,109125260	109111472,109113415,109125594	0.650000
right_lobe_of_liver2_female_adult_53_years	chr15	65577060	65577241	65577240	+	RAMPAGE_only	46	46	242	9.951182	5.756754	chr15	65577153	65577426	SINE|Alu|AluJr	+	chr15	65530488	65578355	HACD3|NM_016395.2	+	65530488,65551675,65554886,65556738,65558679,65562773,65564214,65570090,65571547,65572234,65576302	65530718,65551718,65554960,65556903,65558731,65562884,65564342,65570203,65571654,65572366,65578355	0.991736
right_lobe_of_liver2_female_adult_53_years	chr3	190556206	190556209	190556206	+	RAMPAGE_only	10	11	20	0.822412	3.884184	chr3	190556136	190556235	LINE|L1|L1ME3	-	chr3	190563445	190609079	IL1RAP|ENST00000453359.5	+	190563445,190564288,190604127,190608994	190563532,190564353,190604413,190609079	1.000000
right_lobe_of_liver2_female_adult_53_years	chr17	59619874	59619923	59619894	+	High_confidence	532	629	1873	77.018856	6.261266	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.973839
right_lobe_of_liver2_female_adult_53_years	chr1	176162936	176162963	176162936	-	RAMPAGE_only	4	8	19	0.781291	3.826875	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.631579
right_lobe_of_liver2_female_adult_53_years	chr2	55615604	55615666	55615665	-	High_confidence	9	9	40	1.644823	3.756198	chr2	55615580	55615882	SINE|Alu|AluSc	+	chr2	55598697	55616617	PPP4R3B|ENST00000470801.1	-	55598697,55603977,55615450,55616517	55599039,55604076,55615506,55616617	0.925000
right_lobe_of_liver2_female_adult_53_years	chr16	1828224	1828234	1828224	+	RAMPAGE_only	3	3	8	0.328965	2.807355	chr16	1827999	1828297	SINE|Alu|AluY	+	chr16	1827223	1828907	FAHD1|NM_031208.3	+	1827223	1828907	0.500000
right_lobe_of_liver2_female_adult_53_years	chr15	45397283	45397346	45397345	-	High_confidence	265	385	1277	52.510987	5.766170	chr15	45397083	45398013	LTR|ERVL|MER21C	+	chr15	45380499	45397346	GATM|ENST00000527933.2	-	45380499,45396166,45396921	45380559,45396253,45397346	0.944401
right_lobe_of_liver2_female_adult_53_years	chr15	80059918	80059933	80059918	+	High_confidence	89	95	201	8.265238	5.136694	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.985075
right_lobe_of_liver2_female_adult_53_years	chr8	123202348	123202415	123202414	-	High_confidence	3906	4019	7654	314.736960	4.356778	chr8	123202116	123202636	LINE|L2|L2b	+	chr8	123201171	123202743	FAM83A-AS1|ENST00000520576.5	-	123201171,123202207	123201982,123202743	0.979488
right_lobe_of_liver2_female_adult_53_years	chr17	19030808	19030828	19030808	-	RAMPAGE_only	3	3	9	0.370085	2.725481	chr17	19030676	19030974	LINE|L2|L2a	+	chr17	19021862	19042485	GRAP|ENST00000395635.5	-	19021862,19024214,19035957,19041806,19042323	19022144,19024383,19036080,19041904,19042485	1.000000
right_lobe_of_liver2_female_adult_53_years	chr4	73528815	73528846	73528815	+	RAMPAGE_only	2	2	8	0.328965	2.500000	chr4	73528761	73529311	LTR|ERVL-MaLR|MLT1G3	-	chr4	73510210	73542891	STRG.16026.10	+	73510210,73528175,73528412	73510343,73528265,73542891	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	225810576	225810607	225810576	+	High_confidence	3	3	10	0.411206	3.121928	chr1	225810574	225810980	LTR|ERV1|LTR7	-	chr1	225810411	225845559	EPHX1|ENST00000614058.4	+	225810411,225828724,225831778,225838653,225839216,225839828,225842365,225844497,225845145	225810615,225828912,225831959,225838881,225839346,225840037,225842474,225844623,225845559	0.900000
right_lobe_of_liver2_female_adult_53_years	chr16	11587465	11587475	11587465	-	High_confidence	9	9	15	0.616809	3.235926	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.933333
right_lobe_of_liver2_female_adult_53_years	chr12	132605185	132605215	132605214	-	High_confidence	34	36	156	6.414811	5.384282	chr12	132605116	132605223	SINE|MIR|MIRc	-	chr12	132603085	132605290	STRG.43148.4	-	132603085,132604253,132604461,132604705	132603404,132604376,132604584,132605290	0.993590
right_lobe_of_liver2_female_adult_53_years	chr17	59620043	59620081	59620043	+	High_confidence	5	7	31	1.274738	3.758867	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.838710
right_lobe_of_liver2_female_adult_53_years	chr9	110170578	110170638	110170637	+	RAMPAGE_only	12	12	38	1.562582	4.551462	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	0.947368
right_lobe_of_liver2_female_adult_53_years	chr19	44914321	44914322	44914321	+	High_confidence	231	234	266	10.938076	5.867523	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.699248
right_lobe_of_liver2_female_adult_53_years	chr7	99410096	99410113	99410112	+	High_confidence	3	3	8	0.328965	2.807355	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.875000
right_lobe_of_liver2_female_adult_53_years	chr12	121857334	121857424	121857338	-	High_confidence	46	49	422	17.352887	6.406709	chr12	121857068	121857295	SINE|Alu|AluSx1	-	chr12	121848998	121857583	HPD|ENST00000542159.2	-	121848998,121849686,121854702,121856323,121856582,121857327	121849076,121849938,121854792,121856406,121856603,121857583	0.857820
right_lobe_of_liver2_female_adult_53_years	chr11	58943649	58943652	58943649	+	High_confidence	109	109	173	7.113861	5.724276	chr11	58943541	58944242	LTR|ERV1|MER57-int	+	chr11	58943370	58955334	GLYATL1|ENST00000524881.5	+	58943370,58943542,58947045,58947857,58954769,58955175	58943460,58943666,58947165,58947965,58954896,58955334	0.878613
right_lobe_of_liver2_female_adult_53_years	chr9	113395431	113395432	113395431	-	RAMPAGE_only	12	12	12	0.493447	3.418296	chr9	113395423	113395553	DNA|TcMar-Tigger|Tigger19b	+	chr9	113392131	113397402	ALAD|ENST00000452726.1	-	113392131,113393446,113397045	113392169,113393634,113397402	0.500000
right_lobe_of_liver2_female_adult_53_years	chr1	59515713	59515714	59515713	+	High_confidence	40	44	51	2.097150	5.278563	chr1	59515522	59515871	LTR|ERVL-MaLR|THE1A	+	chr1	59515628	59762730	FGGY|NM_001278224.1	+	59515628,59554123,59607802,59625987,59638227,59660218,59667282,59674038,59757930,59762502	59515795,59554227,59607910,59626049,59638375,59660293,59667403,59674133,59757992,59762730	0.627451
right_lobe_of_liver2_female_adult_53_years	chr19	11356802	11356803	11356802	+	High_confidence	13	13	13	0.534568	3.546594	chr19	11356842	11356927	SINE|MIR|MIRc	+	chr19	11357695	11359894	PLPPR2|ENST00000588196.1	+	11357695,11359531	11357739,11359894	0.692308
right_lobe_of_liver2_female_adult_53_years	chr7	35763037	35763080	35763037	+	High_confidence	13	13	38	1.562582	3.961320	chr7	35762878	35763437	LINE|L2|L2a	-	chr7	35763047	35763405	STRG.26196.1	+	35763047	35763405	0.736842
right_lobe_of_liver2_female_adult_53_years	chr4	73508648	73508695	73508694	+	High_confidence	2	2	8	0.328965	2.750000	chr4	73508567	73508887	SINE|Alu|AluJr4	-	chr4	73508802	73528533	LOC728040|NR_046377.1	+	73508802,73509674,73510202,73528412	73509252,73509725,73510343,73528533	0.875000
right_lobe_of_liver2_female_adult_53_years	chr16	72058623	72058672	72058671	+	RAMPAGE_only	4	4	15	0.616809	3.506891	chr16	72058661	72058887	SINE|MIR|MIR	-	chr16	72056160	72060928	HP|ENST00000567185.7	+	72056160,72056529,72057391,72058253,72059116,72060111	72056243,72056631,72057466,72058355,72059188,72060928	1.000000
right_lobe_of_liver2_female_adult_53_years	chr2	218398219	218398233	218398232	+	High_confidence	5	5	9	0.370085	2.750000	chr2	218398216	218398343	SINE|MIR|MIRb	+	chr2	218398337	218405941	CTDSP1|NM_001206878.1	+	218398337,218401563,218402113,218402348,218403034,218403231,218404296	218398479,218401712,218402215,218402405,218403127,218403417,218405941	0.555556
right_lobe_of_liver2_female_adult_53_years	chr19	15660648	15660663	15660662	+	RAMPAGE_only	4	5	9	0.370085	2.750000	chr19	15660625	15660677	DNA|hAT-Charlie|MER5A	+	chr19	15640899	15662825	CYP4F3|ENST00000221307.12	+	15640899,15641414,15645718,15647051,15647196,15649159,15649912,15652568,15652822,15658263,15658490,15658726,15659219	15640945,15641613,15645863,15647105,15647324,15649281,15650183,15652635,15652952,15658397,15658555,15658809,15662825	0.888889
right_lobe_of_liver2_female_adult_53_years	chr6	154441524	154441541	154441525	-	RAMPAGE_only	13	23	65	2.672838	5.554924	chr6	154441482	154441660	SINE|Alu|AluSx	-	chr6	154405462	154434073	CNKSR3|ENST00000433165.6	-	154405462,154410342,154410933,154414298,154422505,154422914,154428127,154430471,154433465,154433778	154406652,154410432,154411142,154414423,154422652,154422983,154428187,154430591,154433507,154434073	0.676923
right_lobe_of_liver2_female_adult_53_years	chr12	46243271	46243297	46243278	-	RAMPAGE_only	4	4	13	0.534568	3.188722	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.923077
right_lobe_of_liver2_female_adult_53_years	chr10	65570512	65570522	65570521	+	High_confidence	14	20	44	1.809306	4.881704	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.568182
right_lobe_of_liver2_female_adult_53_years	chr8	144103593	144103649	144103593	-	High_confidence	3	3	28	1.151376	4.315824	chr8	144103289	144103558	SINE|MIR|MIR	-	chr8	144098636	144104190	SHARPIN|ENST00000398712.6	-	144098636,144098865,144099080,144099276,144099509,144099702,144099928,144103050,144103552	144098788,144098994,144099205,144099430,144099618,144099844,144100069,144103225,144104190	0.928571
right_lobe_of_liver2_female_adult_53_years	chr3	129439740	129439766	129439754	-	High_confidence	3	3	14	0.575688	3.664498	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129437046	129439937	MBD4|ENST00000505883.1	-	129437046,129437807,129439729	129437308,129437950,129439937	0.500000
right_lobe_of_liver2_female_adult_53_years	chr10	12084745	12084746	12084745	+	RAMPAGE_only	14	14	15	0.616809	3.521641	chr10	12084768	12085060	SINE|Alu|AluSp	+	chr10	12069023	12091643	DHTKD1|ENST00000437298.1	+	12069023,12081471,12084539,12088985,12091512	12069187,12081627,12084751,12089255,12091643	0.666667
right_lobe_of_liver2_female_adult_53_years	chrX	9164600	9164628	9164602	-	High_confidence	14	29	65	2.672838	4.790440	chrX	9164452	9164853	LTR|ERVL-MaLR|MSTA	-	chrX	9025104	9164606	FAM9B|ENST00000472522.5	-	9025104,9025483,9027867,9029306,9030260,9032129,9032340,9032958,9082578,9162796,9164292	9025377,9025583,9027966,9029418,9030360,9032161,9032461,9033075,9082735,9162904,9164606	0.815385
right_lobe_of_liver2_female_adult_53_years	chr5	115739043	115739057	115739043	+	High_confidence	9	10	17	0.699050	4.000000	chr5	115738242	115739340	LTR|ERV1|MER57A-int	-	chr5	115738977	115756527	AC008549.1|ENST00000512900.2	+	115738977,115739359,115755390	115739114,115739507,115756527	0.647059
right_lobe_of_liver2_female_adult_53_years	chr2	187565549	187565550	187565549	-	High_confidence	6	6	6	0.246724	2.584963	chr2	187565380	187565695	LTR|ERV1|HERVH-int	-	chr2	187496880	187565760	TFPI|ENST00000421427.5	-	187496880,187503647,187529363,187554199,187565549	187497078,187503770,187529485,187554349,187565760	0.500000
right_lobe_of_liver2_female_adult_53_years	chr2	108451062	108451086	108451085	+	RAMPAGE_only	4	6	9	0.370085	2.947703	chr2	108451073	108451151	LINE|RTE-BovB|MamRTE1	-	chr2	108449883	108472899	GCC2|ENST00000409896.1	+	108449883,108451027,108452398,108468979,108469650,108472826	108449994,108451112,108452466,108469084,108472116,108472899	1.000000
right_lobe_of_liver2_female_adult_53_years	chr12	7502483	7502504	7502503	-	High_confidence	22	23	38	1.562582	5.058814	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.947368
right_lobe_of_liver2_female_adult_53_years	chr14	104767175	104767249	104767206	+	High_confidence	19	19	58	2.384994	5.299250	chr14	104766824	104767423	LTR|ERV1|LTR71B	-	chr14	104767861	104770177	STRG.46808.2	+	104767861,104768391	104768007,104770177	0.931034
right_lobe_of_liver2_female_adult_53_years	chr10	67992219	67992237	67992223	-	RAMPAGE_only	3	3	9	0.370085	2.750000	chr10	67991905	67992181	SINE|Alu|AluJb	-	chr10	67964791	67990241	HERC4|ENST00000460168.1	-	67964791,67988662,67990210	67966802,67988835,67990241	0.555556
right_lobe_of_liver2_female_adult_53_years	chr19	44936167	44936174	44936167	+	RAMPAGE_only	6	6	14	0.575688	3.026987	chr19	44936182	44936324	SINE|MIR|MIR	+	chr19	44942237	44949565	APOC4-APOC2|NR_037932.1	+	44942237,44944748,44945139,44948465,44948700,44949158	44942353,44944890,44946075,44948533,44948860,44949565	0.571429
right_lobe_of_liver2_female_adult_53_years	chr15	40650121	40650152	40650151	+	High_confidence	14	16	108	4.441023	5.740592	chr15	40650091	40650181	LINE|L2|L2c	+	chr15	40650126	40654977	KNL1|ENST00000532347.1	+	40650126,40650543,40651470,40652004,40654908	40650378,40650583,40651572,40652105,40654977	0.731481
right_lobe_of_liver2_female_adult_53_years	chr11	96387590	96387618	96387617	-	High_confidence	3	3	7	0.287844	2.521641	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	0.571429
right_lobe_of_liver2_female_adult_53_years	chr1	52708380	52708381	52708380	-	RAMPAGE_only	5	5	8	0.328965	2.750000	chr1	52708320	52708479	LINE|L2|L2c	+	chr1	52684450	52698366	COA7|ENST00000371538.4	-	52684450,52692726,52698220	52688168,52692867,52698366	1.000000
right_lobe_of_liver2_female_adult_53_years	chr14	23636366	23636367	23636366	+	High_confidence	17	17	21	0.863532	4.106603	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	0.904762
right_lobe_of_liver2_female_adult_53_years	chr12	2798799	2798807	2798806	+	High_confidence	5	6	11	0.452326	3.027169	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.818182
right_lobe_of_liver2_female_adult_53_years	chr18	58088234	58088278	58088277	+	RAMPAGE_only	7	7	22	0.904653	3.913977	chr18	58087897	58088355	LTR|ERVL-MaLR|MLT1F	-	chr18	58047225	58401540	NEDD4L|NM_001144964.1	+	58047225,58165787,58245426,58248898,58252000,58315981,58322424,58323231,58324995,58328994,58330737,58333817,58335477,58341037,58341677,58342905,58349536,58350990,58357193,58364267,58365998,58367745,58370396,58373173,58383245,58385525,58387438,58389084,58390645,58391486,58396166	58047510,58165861,58245508,58248937,58252054,58316032,58322486,58323334,58325162,58329127,58330914,58333892,58335537,58341169,58341797,58343103,58349614,58351045,58357252,58364333,58366228,58367867,58370467,58373269,58383319,58385586,58387498,58389192,58390742,58391559,58401540	0.772727
right_lobe_of_liver2_female_adult_53_years	chr13	50083119	50083120	50083119	+	High_confidence	15	16	22	0.904653	4.021928	chr13	50083020	50083238	SINE|MIR|MIRb	-	chr13	50082170	50107218	DLEU1|ENST00000469754.2	+	50082170,50083141,50104703	50082557,50083194,50107218	0.909091
right_lobe_of_liver2_female_adult_53_years	chr7	99659261	99659393	99659363	-	RAMPAGE_only	10	11	98	4.029817	5.544198	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99658832	99663582	CYP3A5|ENST00000473347.1	-	99658832,99662815	99660659,99663582	0.683673
right_lobe_of_liver2_female_adult_53_years	chr10	104254347	104254358	104254347	+	High_confidence	7	7	12	0.493447	2.913977	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254193	104267464	GSTO1|NM_001191003.1	+	104254193,104255162,104259575,104262978,104266083,104267251	104254499,104255271,104259798,104263077,104266190,104267464	0.833333
right_lobe_of_liver2_female_adult_53_years	chr9	90992088	90992092	90992088	-	High_confidence	24	24	38	1.562582	4.629249	chr9	90991840	90992378	LTR|ERVL|MER68	-	chr9	90991663	90992070	STRG.32983.1	-	90991663	90992070	0.552632
right_lobe_of_liver2_female_adult_53_years	chr11	1664003	1664063	1664040	+	RAMPAGE_only	6	10	48	1.973788	5.075078	chr11	1664080	1664495	LINE|L1|L1MB3	+	chr11	1665596	1669042	STRG.37103.2	+	1665596,1666434,1667524,1667962	1665764,1666825,1667748,1669042	0.937500
right_lobe_of_liver2_female_adult_53_years	chr20	34369438	34369458	34369457	+	RAMPAGE_only	4	5	10	0.411206	3.121928	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	1.000000
right_lobe_of_liver2_female_adult_53_years	chr21	22062530	22062575	22062539	-	High_confidence	12	12	53	2.179391	4.862368	chr21	22062350	22062974	LINE|L2|L2a	+	chr21	22035028	22062948	STRG.57630.3	-	22035028,22042944,22062008	22041435,22043087,22062948	1.000000
right_lobe_of_liver2_female_adult_53_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	15	15	15	0.616809	3.456565	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
right_lobe_of_liver2_female_adult_53_years	chr1	120609355	120609364	120609355	-	RAMPAGE_only	3	6	10	0.411206	3.121928	chr1	120609331	120609453	SINE|MIR|MIR3	+	chr1	120489859	120701289	AC241952.1|ENST00000612480.2	-	120489859,120491581,120491934,120493157,120494233,120495029,120497181,120501109,120501927,120503599,120504381,120505710,120509484,120511665,120512469,120513765,120514824,120516823,120518529,120519217,120520233,120523893,120530295,120536310,120538322,120538570,120541891,120543005,120543946,120544266,120545280,120548288,120548640,120548972,120550144,120573071,120578705,120579070,120620354,120641607,120646872,120701056	120489916,120491628,120492073,120493301,120494460,120495146,120497421,120501234,120502117,120503719,120504513,120505962,120509670,120511818,120512693,120513817,120515060,120517352,120518649,120519410,120520669,120524126,120530384,120536402,120538404,120538735,120542078,120543196,120544084,120544380,120545439,120548501,120548733,120549092,120550276,120573189,120578881,120579194,120620465,120641759,120646928,120701289	0.600000
right_lobe_of_liver2_female_adult_53_years	chr20	37344712	37344725	37344712	+	High_confidence	17	30	77	3.166285	5.227088	chr20	37344715	37344779	SINE|MIR|MIRc	+	chr20	37344715	37405418	STRG.57016.2	+	37344715,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405418	0.870130
right_lobe_of_liver2_female_adult_53_years	chr12	109179176	109179280	109179279	+	RAMPAGE_only	53	55	140	5.756882	4.648942	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109139396	109260147	ACACB|ENST00000377854.9	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260147	0.992857
right_lobe_of_liver2_female_adult_53_years	chr5	65722895	65722919	65722895	-	High_confidence	3	3	10	0.411206	2.846439	chr5	65722781	65722883	DNA|hAT-Ac|OldhAT1	-	chr5	65680687	65723035	SGTB|ENST00000506816.1	-	65680687,65685367,65704278,65708488,65712960,65720707,65722756	65680794,65685472,65704378,65708558,65713064,65720829,65723035	1.000000
right_lobe_of_liver2_female_adult_53_years	chr10	44990377	44990399	44990398	+	High_confidence	6	6	10	0.411206	3.169925	chr10	44990231	44990788	LTR|ERV1|MER34A1	-	chr10	44990537	44991970	RASSF4|ENST00000493490.1	+	44990537,44990947,44991904	44990828,44991069,44991970	0.700000
right_lobe_of_liver2_female_adult_53_years	chr7	87519336	87519364	87519353	-	High_confidence	3	4	13	0.534568	3.418296	chr7	87519184	87519318	SINE|5S-Deu-L2|AmnSINE1	-	chr7	87505901	87518963	ABCB1|ENST00000475929.5	-	87505901,87509274,87515230,87516508,87518880	87506043,87509481,87515428,87516665,87518963	0.846154
right_lobe_of_liver2_female_adult_53_years	chr16	30354679	30354684	30354679	-	High_confidence	7	8	14	0.575688	3.664498	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	1.000000
right_lobe_of_liver2_female_adult_53_years	chr3	187041605	187041606	187041605	+	RAMPAGE_only	5	5	8	0.328965	2.521641	chr3	187041603	187041758	SINE|MIR|MIRb	+	chr3	187025478	187043084	ST6GAL1|ENST00000423451.5	+	187025478,187038741,187042653	187025517,187038873,187043084	0.750000
right_lobe_of_liver2_female_adult_53_years	chr19	51350348	51350380	51350356	-	RAMPAGE_only	16	18	77	3.166285	4.577083	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.961039
right_lobe_of_liver2_female_adult_53_years	chr11	71999605	71999627	71999605	+	High_confidence	10	10	64	2.631717	4.855181	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999600	72002697	IL18BP|ENST00000534583.5	+	71999600,72000350,72001200,72001404,72001783,72002552	72000012,72000557,72001324,72001552,72001948,72002697	0.968750
right_lobe_of_liver2_female_adult_53_years	chr7	111940109	111940147	111940146	-	RAMPAGE_only	3	3	13	0.534568	3.418296	chr7	111940063	111940135	LINE|RTE-BovB|MamRTE1	-	chr7	111728273	112004131	DOCK4|ENST00000445943.5	-	111728273,111732225,111735053,111736916,111739133,111739395,111741093,111741539,111742012,111746333,111747266,111755514,111758623,111760180,111765117,111767031,111769528,111778275,111782863,111783856,111784096,111788661,111790456,111808820,111809300,111811873,111822361,111834587,111840762,111844762,111846998,111863371,111867983,111869573,111871989,111872268,111872466,111877029,111895611,111900373,111901676,111915778,111935539,111940109,111944810,111945716,111977131,111984305,111989014,111994134,111998447,112000493,112004047	111728720,111732287,111735167,111736989,111739243,111739477,111741214,111741661,111742132,111746417,111747443,111755601,111758790,111760322,111765222,111767118,111769677,111778369,111782924,111783952,111784123,111788747,111790605,111808879,111809401,111811949,111822456,111834686,111840870,111844897,111847126,111863564,111868154,111869655,111872090,111872352,111872564,111877186,111895718,111900536,111901801,111915904,111935628,111940242,111944871,111945798,111977283,111984390,111989163,111994231,111998503,112000534,112004131	0.923077
right_lobe_of_liver2_female_adult_53_years	chr17	77390290	77390295	77390290	+	RAMPAGE_only	36	36	87	3.577491	4.637745	chr17	77390212	77390366	SINE|Alu|AluYc	+	chr17	77380122	77402483	SEPT9|ENST00000589140.1	+	77380122,77402058	77380249,77402483	0.862069
right_lobe_of_liver2_female_adult_53_years	chrX	7147267	7147288	7147287	+	High_confidence	92	92	195	8.018514	6.189536	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147275	7354635	STRG.59149.2	+	7147275,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7148083,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354635	0.984615
right_lobe_of_liver2_female_adult_53_years	chr16	68873831	68873832	68873831	+	RAMPAGE_only	6	6	7	0.287844	2.584963	chr16	68873613	68874494	LINE|L1|L1MB7	-	chr16	68875223	68902442	TANGO6|ENST00000565852.1	+	68875223,68878106,68880547,68900433,68902327	68875290,68878280,68880630,68900546,68902442	0.857143
right_lobe_of_liver2_female_adult_53_years	chr8	42542295	42542296	42542295	+	High_confidence	5	7	8	0.328965	2.521641	chr8	42542201	42542309	SINE|MIR|MIRb	+	chr8	42541795	42552997	SMIM19|NM_001135675.1	+	42541795,42546468,42548655,42552543	42542155,42546606,42548780,42552997	0.875000
right_lobe_of_liver2_female_adult_53_years	chr11	72780721	72780775	72780774	-	High_confidence	4	4	27	1.110256	4.008132	chr11	72780745	72780846	SINE|MIR|MIR1_Amn	+	chr11	72754842	72781116	STARD10|ENST00000538437.5	-	72754842,72755700,72758529,72759233,72780974	72755142,72755753,72758633,72759381,72781116	0.814815
right_lobe_of_liver2_female_adult_53_years	chr9	101385078	101385104	101385103	-	High_confidence	2	2	7	0.287844	2.807355	chr9	101384858	101386000	LTR|ERVK|MER11A	-	chr9	101361503	101385013	STRG.33396.2	-	101361503,101368119,101370938,101384854	101363015,101368322,101371463,101385013	0.857143
right_lobe_of_liver2_female_adult_53_years	chr16	76532277	76532327	76532326	-	High_confidence	12	15	42	1.727065	4.167891	chr16	76532240	76532329	SINE|MIR|MIRc	+	chr16	76530482	76532314	STRG.50606.1	-	76530482	76532314	0.857143
right_lobe_of_liver2_female_adult_53_years	chr5	42810764	42810768	42810764	-	RAMPAGE_only	2	3	6	0.246724	2.584963	chr5	42810474	42810757	SINE|Alu|AluSg	-	chr5	42806582	42811889	SELENOP|ENST00000510650.5	-	42806582,42811835	42807108,42811889	0.500000
right_lobe_of_liver2_female_adult_53_years	chr15	71747851	71747852	71747851	+	RAMPAGE_only	24	24	27	1.110256	4.071035	chr15	71747409	71747892	LTR|ERV1|LTR44	-	chr15	71660454	71767651	THSD4|ENST00000567838.1	+	71660454,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71766698	71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71767651	0.888889
right_lobe_of_liver2_female_adult_53_years	chr11	11451698	11451699	11451698	-	RAMPAGE_only	54	54	68	2.796200	5.364305	chr11	11451697	11451900	SINE|MIR|MIRb	-	chr11	11270875	11622005	GALNT18|ENST00000227756.4	-	11270875,11293028,11327085,11332693,11340818,11372514,11377181,11379080,11432620,11448743,11621358	11271290,11293193,11327181,11332831,11341004,11372629,11377379,11379264,11432787,11448936,11622005	0.720588
right_lobe_of_liver2_female_adult_53_years	chr19	50016128	50016140	50016128	-	RAMPAGE_only	2	2	8	0.328965	2.500000	chr19	50016092	50016166	DNA|hAT-Ac|OldhAT1	-	chr19	49994862	50020647	VRK3|ENST00000599342.5	-	49994862,50000789,50007568,50009235,50015731,50016023,50020584	49994919,50000854,50007826,50009385,50015793,50016163,50020647	1.000000
right_lobe_of_liver2_female_adult_53_years	chr9	39810023	39810034	39810033	-	High_confidence	16	17	34	1.398100	4.477025	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.588235
right_lobe_of_liver2_female_adult_53_years	chr2	122808442	122808470	122808447	-	High_confidence	28	28	123	5.057832	5.977617	chr2	122808033	122811260	LINE|L1|L1PBa1	+	chr2	122800149	122808470	STRG.8269.1	-	122800149,122803790,122808318	122801497,122803877,122808470	0.813008
right_lobe_of_liver2_female_adult_53_years	chr1	67533154	67533158	67533154	-	RAMPAGE_only	6	6	11	0.452326	2.921928	chr1	67533014	67533307	SINE|Alu|AluSz6	-	chr1	67407809	67430440	SERBP1|NM_015640.3	-	67407809,67415165,67420008,67424199,67424887,67425082,67426134,67429987	67413263,67415339,67420186,67424277,67424959,67425223,67426285,67430440	0.545455
right_lobe_of_liver2_female_adult_53_years	chr9	110170695	110170775	110170695	+	RAMPAGE_only	7	9	56	2.302753	5.338368	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	0.982143
right_lobe_of_liver2_female_adult_53_years	chr19	47289969	47289984	47289983	+	High_confidence	2	3	6	0.246724	2.584963	chr19	47289949	47290265	LINE|L1|L1M1	+	chr19	47289790	47297045	STRG.55698.2	+	47289790,47291977,47296599	47290061,47292173,47297045	0.500000
right_lobe_of_liver2_female_adult_53_years	chr21	38905451	38905458	38905457	-	High_confidence	55	57	102	4.194300	5.537564	chr21	38905254	38905659	LTR|ERV1|LTR9B	-	chr21	38864007	38905443	STRG.58123.3	-	38864007,38901900,38904954	38864225,38901965,38905443	0.843137
right_lobe_of_liver2_female_adult_53_years	chr10	133514368	133514369	133514368	-	RAMPAGE_only	6	6	6	0.246724	2.584963	chr10	133514136	133514490	LTR|ERVL-MaLR|THE1B	-	chr10	133472448	133473396	STRG.37017.2	-	133472448	133473396	0.666667
right_lobe_of_liver2_female_adult_53_years	chrX	48683361	48683363	48683362	+	High_confidence	15	23	23	0.945773	3.533771	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.913043
right_lobe_of_liver2_female_adult_53_years	chr15	58431149	58431150	58431149	+	High_confidence	8	8	11	0.452326	3.095795	chr15	58431102	58431256	LINE|L2|L2a	+	chr15	58431642	58548572	STRG.48259.7	+	58431642,58431992,58538332,58541784,58542533,58545741,58548329	58431776,58432120,58538517,58541967,58542651,58545975,58548572	0.909091
right_lobe_of_liver2_female_adult_53_years	chr8	32927967	32927984	32927976	+	RAMPAGE_only	41	45	121	4.975591	5.911406	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.719008
right_lobe_of_liver2_female_adult_53_years	chr7	96503515	96503523	96503515	-	High_confidence	5	5	10	0.411206	2.721928	chr7	96503114	96503968	LTR|Gypsy|MamGypsy2-I	-	chr7	96483712	96503510	SEM1|ENST00000611360.4	-	96483712,96486202,96496283,96503482	96483988,96486417,96496341,96503510	1.000000
right_lobe_of_liver2_female_adult_53_years	chr18	42159395	42159405	42159404	+	High_confidence	9	9	22	0.904653	3.606937	chr18	42159347	42159550	SINE|MIR|MIR3	-	chr18	42159427	42159751	STRG.53783.1	+	42159427	42159751	0.590909
right_lobe_of_liver2_female_adult_53_years	chr4	22714091	22714092	22714091	+	High_confidence	8	8	10	0.411206	2.641604	chr4	22714022	22714187	LTR|ERV1|LTR78	-	chr4	22714088	22819527	GBA3|ENST00000511446.2	+	22714088,22735980,22747295,22748836,22818720	22714150,22736208,22748092,22748960,22819527	0.700000
right_lobe_of_liver2_female_adult_53_years	chr9	125201248	125201278	125201248	+	High_confidence	4	4	19	0.781291	4.169925	chr9	125200941	125201383	LINE|L2|L2b	-	chr9	125200604	125220658	RABEPK|ENST00000416065.1	+	125200604,125207563,125213369,125220538	125200906,125207721,125213522,125220658	0.789474
right_lobe_of_liver2_female_adult_53_years	chr14	104750832	104750833	104750832	-	RAMPAGE_only	18	18	20	0.822412	3.787144	chr14	104750447	104752026	LTR|ERV1|LTR12C	-	chr14	104749322	104766963	STRG.46809.1	-	104749322,104754276,104754576,104755670,104757285,104766842	104753954,104754471,104755263,104756743,104757420,104766963	0.850000
right_lobe_of_liver2_female_adult_53_years	chr6	43025277	43025312	43025307	+	High_confidence	10	10	39	1.603703	4.523986	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.897436
right_lobe_of_liver_female_adult_53_years	chr16	29963560	29963579	29963560	+	High_confidence	5	7	18	0.514928	3.969816	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.722222
right_lobe_of_liver_female_adult_53_years	chr9	120471802	120471818	120471802	-	RAMPAGE_only	5	5	22	0.629356	3.784942	chr9	120471770	120471851	LINE|L2|L2	+	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.545455
right_lobe_of_liver_female_adult_53_years	chr1	160289651	160289791	160289790	-	RAMPAGE_only	13	20	106	3.032352	4.655074	chr1	160289588	160289890	SINE|Alu|AluSz6	-	chr1	160289353	160297356	COPA|ENST00000648280.1	-	160289353,160290491,160291334,160291818,160292011,160292483,160293385,160294483,160294767,160295735,160296060,160297342	160290216,160290686,160291496,160291929,160292198,160292620,160293463,160294593,160294857,160295859,160296149,160297356	0.792453
right_lobe_of_liver_female_adult_53_years	chr14	91462074	91462211	91462210	-	High_confidence	23	25	130	3.718922	5.069553	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.976923
right_lobe_of_liver_female_adult_53_years	chr22	26512099	26512116	26512099	-	High_confidence	3	3	10	0.286071	2.947703	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	0.900000
right_lobe_of_liver_female_adult_53_years	chrX	48589967	48590033	48590029	+	High_confidence	39	39	163	4.662956	5.929905	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48590041	48599682	STRG.95697.7	+	48590041,48597957,48599352,48599586	48590287,48598957,48599462,48599682	0.957055
right_lobe_of_liver_female_adult_53_years	chr12	132605157	132605215	132605214	-	High_confidence	19	21	161	4.605742	5.581945	chr12	132605116	132605223	SINE|MIR|MIRc	-	chr12	132603045	132605194	STRG.70302.3	-	132603045,132603640,132604461,132604705	132603620,132604376,132604584,132605194	0.993789
right_lobe_of_liver_female_adult_53_years	chr11	58942544	58942565	58942564	+	High_confidence	11	11	21	0.600749	3.984184	chr11	58942450	58943108	LINE|L2|L2a	-	chr11	58943248	58956406	GLYATL1|ENST00000527708.5	+	58943248,58943542,58947045,58947857,58954769,58955175,58955609	58943322,58943666,58947165,58947965,58954896,58955353,58956406	0.904762
right_lobe_of_liver_female_adult_53_years	chr8	144063550	144063555	144063550	-	High_confidence	6	7	13	0.371892	2.931209	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144058886	144063965	OPLAH|ENST00000567871.2	-	144058886,144058979,144059598,144059861,144063699	144058896,144059079,144059790,144060085,144063965	1.000000
right_lobe_of_liver_female_adult_53_years	chr13	31982778	31982779	31982778	+	RAMPAGE_only	6	6	6	0.171643	2.584963	chr13	31982698	31982791	LINE|L2|L2c	+	chr13	31945825	32299105	FRY|ENST00000647500.1	+	31945825,32078833,32101962,32117333,32124285,32124601,32124794,32131671,32134903,32135084,32136870,32147281,32147838,32149747,32155490,32157272,32161143,32171011,32173366,32175545,32178176,32178843,32179674,32182976,32184599,32184975,32186259,32187545,32194142,32201940,32202355,32208852,32209584,32210865,32212291,32218748,32224234,32224932,32225788,32228455,32231178,32234573,32236077,32237378,32239251,32239710,32244041,32247322,32249525,32251877,32254223,32261615,32262313,32265449,32267169,32274841,32276463,32278464,32289632,32294367,32295201	31946181,32079033,32102016,32117473,32124376,32124681,32124875,32131840,32134996,32135183,32136972,32147385,32147947,32149834,32155662,32157405,32161251,32171270,32173549,32175632,32178436,32179033,32179799,32183034,32184691,32185148,32186420,32187656,32194297,32202040,32202527,32209109,32209731,32211034,32212382,32218831,32224385,32225036,32225974,32228654,32231300,32234761,32236172,32237986,32239349,32239881,32244182,32247502,32249687,32251952,32254394,32261816,32262475,32265616,32267359,32274991,32276562,32278548,32289743,32294570,32299105	0.666667
right_lobe_of_liver_female_adult_53_years	chr1	12572736	12572846	12572736	-	RAMPAGE_only	5	5	50	1.430355	5.118563	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.980000
right_lobe_of_liver_female_adult_53_years	chr13	60410080	60410081	60410080	+	RAMPAGE_only	35	37	40	1.144284	4.484255	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60397830	60573864	TDRD3|ENST00000648252.1	+	60397830,60400255,60402717,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573615	60398631,60400292,60402815,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573864	0.925000
right_lobe_of_liver_female_adult_53_years	chr19	10091125	10091164	10091125	+	High_confidence	8	8	39	1.115677	4.731309	chr19	10091002	10091137	DNA|hAT-Blackjack|MER63B	-	chr19	10091589	10093244	C19orf66|ENST00000586730.1	+	10091589	10093244	0.615385
right_lobe_of_liver_female_adult_53_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	9	9	9	0.257464	2.947703	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.555556
right_lobe_of_liver_female_adult_53_years	chr22	35661482	35661581	35661482	+	RAMPAGE_only	13	22	96	2.746281	5.440890	chr22	35661392	35661961	DNA|TcMar-Tigger|Tigger3c	-	chr22	35648394	35668409	APOL6|ENST00000409652.4	+	35648394,35656378,35658614	35648623,35656475,35668409	0.968750
right_lobe_of_liver_female_adult_53_years	chr9	82580701	82580749	82580701	-	RAMPAGE_only	5	7	23	0.657963	3.936180	chr9	82580538	82580914	LINE|L1|L1MB4	+	chr9	82559319	82563125	STRG.54120.1	-	82559319,82562869	82562369,82563125	0.869565
right_lobe_of_liver_female_adult_53_years	chr5	997305	997319	997318	-	High_confidence	11	12	35	1.001248	4.331977	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.914286
right_lobe_of_liver_female_adult_53_years	chr2	168922081	168922149	168922081	-	RAMPAGE_only	3	3	24	0.686570	3.879664	chr2	168921846	168922148	SINE|Alu|AluY	-	chr2	168914490	168945548	STRG.15410.5	-	168914490,168923567,168927155,168930664,168932376,168935183,168944604,168944856	168923521,168924803,168927362,168930862,168932533,168936433,168944766,168945548	0.875000
right_lobe_of_liver_female_adult_53_years	chr1	17216308	17216366	17216328	+	High_confidence	6	7	26	0.743784	4.363713	chr1	17216190	17216588	LINE|L2|L2a	-	chr1	17216313	17224392	STRG.588.1	+	17216313,17222289,17223620,17224366	17216353,17222470,17223693,17224392	0.576923
right_lobe_of_liver_female_adult_53_years	chr1	185881154	185881175	185881174	+	RAMPAGE_only	5	6	17	0.486321	3.875000	chr1	185880911	185881675	LTR|ERV1|LTR1D	-	chr1	185734550	186190953	HMCN1|NM_031935.2	+	185734550,185846025,185864469,185865740,185909336,185911673,185922378,185923389,185925046,185928545,185933548,185962517,185963767,185965801,185970334,185977786,185980977,185982261,185984168,185987431,185989487,185990274,185993181,185994814,185997428,186000044,186001297,186001593,186003717,186007127,186015158,186015957,186016962,186018182,186019540,186023029,186037933,186038828,186039727,186041012,186045687,186048742,186052951,186053824,186055392,186057233,186061850,186062513,186065237,186067833,186069662,186070611,186074740,186076427,186078106,186081206,186082864,186086245,186087216,186087442,186087931,186088144,186088605,186090757,186093133,186093485,186094275,186095242,186103471,186106883,186108460,186112811,186113978,186114818,186115257,186116993,186117458,186119190,186119744,186120010,186122950,186125603,186128077,186129965,186130506,186132327,186136667,186137497,186137801,186144172,186144532,186145402,186145752,186151199,186151605,186152749,186153749,186165110,186166183,186166807,186171336,186172005,186174513,186178415,186182167,186187882,186189511	185735047,185846096,185864628,185865863,185909508,185911780,185922499,185923653,185925191,185928667,185933824,185962659,185963895,185965915,185970493,185977981,185981073,185982389,185984313,185987544,185989647,185990443,185993309,185995087,185997524,186000239,186001428,186001741,186003844,186007282,186015437,186016239,186017071,186018352,186019695,186023153,186038035,186039005,186039879,186041136,186045863,186048839,186053074,186053986,186055674,186057401,186061964,186062600,186065429,186068007,186069776,186070757,186074891,186076622,186078220,186081394,186082961,186086407,186087330,186087645,186088013,186088276,186088755,186090917,186093258,186093669,186094373,186095521,186103668,186106965,186108597,186112953,186114123,186114946,186115414,186117115,186117623,186119298,186119882,186120145,186123220,186125794,186128291,186130100,186130697,186132409,186136937,186137668,186137972,186144343,186144703,186145573,186145923,186151349,186151743,186152871,186153987,186165173,186166303,186166942,186171450,186172131,186174642,186178766,186182287,186188009,186190953	0.941176
right_lobe_of_liver_female_adult_53_years	chr10	4965452	4965459	4965456	+	High_confidence	2	3	9	0.257464	2.500000	chr10	4965257	4965563	SINE|Alu|AluY	-	chr10	4965490	4967048	AKR1C1|ENST00000476100.1	+	4965490,4966926	4966081,4967048	0.666667
right_lobe_of_liver_female_adult_53_years	chr2	27662235	27662263	27662260	-	RAMPAGE_only	3	3	9	0.257464	2.750000	chr2	27662206	27662384	LINE|L2|L2c	-	chr2	27653069	27663639	SUPT7L|ENST00000464789.2	-	27653069,27655364,27657344,27660983,27663514	27653747,27655602,27657669,27662281,27663639	0.888889
right_lobe_of_liver_female_adult_53_years	chr18	26754103	26754158	26754103	-	High_confidence	185	190	348	9.955269	6.067309	chr18	26753863	26754158	SINE|Alu|AluSz	-	chr18	26747450	26754134	STRG.85985.2	-	26747450,26753638	26748159,26754134	0.948276
right_lobe_of_liver_female_adult_53_years	chr17	58535568	58535569	58535568	-	RAMPAGE_only	9	11	13	0.371892	3.546594	chr17	58535378	58535602	LINE|CR1|L3	-	chr17	58520249	58532084	SEPT4|NM_080416.3	-	58520249,58520742,58520997,58521253,58521544,58521735,58521966,58525077,58525694,58526219,58526681,58531960	58520485,58520842,58521160,58521350,58521646,58521853,58522101,58525201,58525781,58526313,58526978,58532084	0.923077
right_lobe_of_liver_female_adult_53_years	chr14	50159437	50159441	50159440	-	RAMPAGE_only	12	12	23	0.657963	4.055958	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	1.000000
right_lobe_of_liver_female_adult_53_years	chr8	17893106	17893125	17893124	-	RAMPAGE_only	4	4	10	0.286071	3.121928	chr8	17892918	17893218	SINE|Alu|AluSz6	+	chr8	17864583	17891809	FGL1|ENST00000518650.5	-	17864583,17868547,17868915,17874018,17874361,17881998,17885491,17891680	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891809	0.500000
right_lobe_of_liver_female_adult_53_years	chr1	43248038	43248098	43248038	-	High_confidence	27	30	51	1.458962	4.612273	chr1	43247843	43248160	SINE|Alu|AluY	+	chr1	43210488	43248205	STRG.1576.4	-	43210488,43215265,43247759	43211571,43215393,43248205	0.725490
right_lobe_of_liver_female_adult_53_years	chr9	125486238	125486260	125486259	-	RAMPAGE_only	3	3	7	0.200250	2.521641	chr9	125486101	125486249	SINE|MIR|MIRb	-	chr9	125438468	125471905	MAPKAP1|ENST00000483937.5	-	125438468,125444500,125467971,125471082	125439012,125444598,125468109,125471905	0.571429
right_lobe_of_liver_female_adult_53_years	chr13	44508804	44508805	44508804	-	RAMPAGE_only	11	11	11	0.314678	3.027169	chr13	44508497	44508853	LINE|L2|L2c	+	chr13	44432142	44474301	TSC22D1|NM_001243798.1	-	44432142,44436043,44474217	44434883,44436095,44474301	1.000000
right_lobe_of_liver_female_adult_53_years	chr17	35026418	35026439	35026418	-	RAMPAGE_only	2	2	7	0.200250	2.807355	chr17	35026200	35026382	SINE|MIR|MIRc	-	chr17	35012001	35021411	RFFL|ENST00000581039.1	-	35012001,35014739,35016369,35021370	35012149,35014763,35016580,35021411	0.571429
right_lobe_of_liver_female_adult_53_years	chr1	31471478	31471480	31471478	-	High_confidence	16	28	36	1.029855	4.704511	chr1	31471367	31471933	LTR|ERV1|LTR10A	-	chr1	31459947	31471552	STRG.1004.1	-	31459947,31461321,31471065	31460503,31461407,31471552	0.805556
right_lobe_of_liver_female_adult_53_years	chr9	39810023	39810084	39810033	-	High_confidence	53	53	119	3.404244	5.754731	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.663866
right_lobe_of_liver_female_adult_53_years	chr1	67522360	67522366	67522360	+	High_confidence	208	209	323	9.240091	6.481059	chr1	67522395	67522435	LTR|ERVL|LTR47A	+	chr1	67522353	67532326	LINC01702|ENST00000230113.4	+	67522353,67527377,67529652,67530314,67532105	67522398,67527437,67529749,67530378,67532326	0.907121
right_lobe_of_liver_female_adult_53_years	chr7	151806679	151806690	151806689	+	High_confidence	3	3	8	0.228857	3.000000	chr7	151806685	151806943	SINE|Alu|AluSz6	+	chr7	151806615	151807642	AC093583.1|ENST00000481153.3	+	151806615,151807442	151807036,151807642	0.750000
right_lobe_of_liver_female_adult_53_years	chr15	60402874	60402893	60402886	-	High_confidence	38	46	143	4.090814	5.998261	chr15	60402666	60403161	LINE|L2|L2c	+	chr15	60364428	60402883	ANXA2|ENST00000557904.5	-	60364428,60382341,60386027,60402768	60364523,60382441,60386086,60402883	0.692308
right_lobe_of_liver_female_adult_53_years	chr11	95794025	95794035	95794025	+	High_confidence	2	2	7	0.200250	2.807355	chr11	95793980	95794143	DNA|hAT-Charlie|Charlie1a	+	chr11	95794261	95800083	STRG.64515.10	+	95794261,95799231	95794533,95800083	1.000000
right_lobe_of_liver_female_adult_53_years	chr2	85805862	85805868	85805867	-	High_confidence	41	47	86	2.460210	4.987876	chr2	85805700	85806064	LTR|ERVL-MaLR|THE1B	-	chr2	85805534	85805851	STRG.12373.1	-	85805534	85805851	0.558140
right_lobe_of_liver_female_adult_53_years	chr5	140596529	140596530	140596529	+	High_confidence	24	24	31	0.886820	4.254196	chr5	140596528	140596989	LTR|ERVL|MER70A	+	chr5	140596565	140597195	STRG.34075.1	+	140596565	140597195	0.774194
right_lobe_of_liver_female_adult_53_years	chr15	65576931	65577241	65577240	+	RAMPAGE_only	63	63	430	12.301050	5.871077	chr15	65577153	65577426	SINE|Alu|AluJr	+	chr15	65530488	65578355	HACD3|NM_016395.2	+	65530488,65551675,65554886,65556738,65558679,65562773,65564214,65570090,65571547,65572234,65576302	65530718,65551718,65554960,65556903,65558731,65562884,65564342,65570203,65571654,65572366,65578355	1.000000
right_lobe_of_liver_female_adult_53_years	chr15	57451514	57451576	57451562	+	RAMPAGE_only	21	21	102	2.917924	4.600014	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.990196
right_lobe_of_liver_female_adult_53_years	chr10	94682948	94682986	94682985	+	High_confidence	584	585	983	28.120773	6.862886	chr10	94682598	94683114	LTR|ERV1|MER61D	-	chr10	94683493	94736190	CYP2C18|NM_000772.2	+	94683493,94687769,94688124,94694916,94706783,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94706960,94720537,94724533,94733438,94736190	0.548321
right_lobe_of_liver_female_adult_53_years	chr9	114323503	114323611	114323503	+	High_confidence	10	11	77	2.202746	4.970104	chr9	114323548	114323622	SINE|MIR|MIR3	+	chr9	114323055	114326475	ORM1|ENST00000259396.8	+	114323055,114323662,114324017,114324789,114325048,114326291	114323247,114323805,114324088,114324897,114325152,114326475	0.766234
right_lobe_of_liver_female_adult_53_years	chr14	85934705	85934737	85934736	+	High_confidence	3	3	14	0.400499	3.378783	chr14	85934517	85934812	LTR|ERV1|LTR12F	+	chr14	85934703	85935148	STRG.75524.1	+	85934703	85935148	0.500000
right_lobe_of_liver_female_adult_53_years	chr15	88635654	88635655	88635654	+	High_confidence	5	5	8	0.228857	2.807355	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303234.1	+	88635636,88636166,88639342,88652109,88655414	88635700,88636292,88639594,88652310,88656344	0.750000
right_lobe_of_liver_female_adult_53_years	chr12	883795	883829	883828	+	RAMPAGE_only	12	16	64	1.830854	5.234070	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	753055	907956	STRG.65836.3	+	753055,813641,827041,830002,857160,859244,861012,862082,871264,878211,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846	754324,813814,827262,830160,857249,859464,861343,862270,871348,878361,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,907956	1.000000
right_lobe_of_liver_female_adult_53_years	chr16	11587465	11587483	11587465	-	High_confidence	6	6	27	0.772392	3.824539	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
right_lobe_of_liver_female_adult_53_years	chr10	16467128	16467150	16467149	+	RAMPAGE_only	4	7	17	0.486321	3.625000	chr10	16467096	16467427	DNA|TcMar-Tigger|MER44A	+	chr10	16484334	16513745	PTER|ENST00000298942.4	+	16484334,16486351,16511045	16484816,16486617,16513745	0.941176
right_lobe_of_liver_female_adult_53_years	chr9	87423073	87423089	87423083	-	RAMPAGE_only	21	22	69	1.973889	5.572009	chr9	87423023	87423375	LTR|ERV1|MER57B2	+	chr9	87419934	87420408	STRG.54288.1	-	87419934	87420408	0.666667
right_lobe_of_liver_female_adult_53_years	chr1	220140244	220140278	220140277	+	High_confidence	3	5	14	0.400499	3.324863	chr1	220140323	220140598	SINE|Alu|AluSz6	+	chr1	220140180	220143344	IARS2|ENST00000467924.1	+	220140180,220141802,220142943	220140289,220141948,220143344	0.714286
right_lobe_of_liver_female_adult_53_years	chr9	104796052	104796189	104796052	-	RAMPAGE_only	12	15	92	2.631853	5.789288	chr9	104795349	104796003	LINE|L2|L2c	-	chr9	104781001	104928237	ABCA1|ENST00000374736.7	-	104781001,104785395,104786297,104786872,104787919,104788425,104790921,104791935,104792785,104793170,104794386,104796052,104796308,104798420,104799818,104800509,104802053,104803283,104804625,104806240,104809465,104810799,104812573,104814117,104814426,104816142,104817331,104818662,104819585,104819926,104821374,104822495,104824464,104825682,104826947,104828915,104830924,104831621,104832573,104836979,104837427,104840278,104845476,104858521,104861678,104883038,104884426,104889101,104903613,104927934	104784455,104785639,104786390,104786976,104788054,104788567,104791028,104791998,104792906,104793300,104794510,104796197,104796424,104798598,104799988,104800584,104802159,104803316,104804720,104806430,104809564,104810924,104812722,104814231,104814475,104816345,104817404,104818883,104819723,104820069,104821506,104822667,104824578,104825887,104827169,104829138,104831101,104831827,104832771,104837096,104837567,104840519,104845569,104858698,104861800,104883157,104884568,104889195,104903771,104928237	0.934783
right_lobe_of_liver_female_adult_53_years	chr1	155343321	155343324	155343323	-	RAMPAGE_only	3	5	8	0.228857	2.807355	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155440596	STRG.5508.5	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155440502	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155440596	0.875000
right_lobe_of_liver_female_adult_53_years	chr11	114295255	114295370	114295336	+	High_confidence	29	49	134	3.833351	6.078115	chr11	114294850	114295386	LTR|ERV1|LTR35A	-	chr11	114295326	114312515	STRG.65220.1	+	114295326,114296400,114297950,114312044	114295388,114296710,114298158,114312515	0.813433
right_lobe_of_liver_female_adult_53_years	chr22	18149848	18149871	18149848	+	High_confidence	5	5	22	0.629356	4.297079	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.954545
right_lobe_of_liver_female_adult_53_years	chr3	179740113	179740146	179740145	+	RAMPAGE_only	4	5	14	0.400499	3.378783	chr3	179740114	179740200	SINE|MIR|MIRc	+	chr3	179721563	179761151	USP13|ENST00000497155.1	+	179721563,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179761111	179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179761151	0.714286
right_lobe_of_liver_female_adult_53_years	chr1	12146954	12146991	12146966	+	RAMPAGE_only	6	6	18	0.514928	3.852169	chr1	12146731	12147081	LINE|L2|L2c	-	chr1	12167002	12209228	TNFRSF1B|ENST00000376259.6	+	12167002,12188795,12190956,12191773,12192430,12192862,12193954,12194583,12201966,12206739	12167169,12188895,12191085,12191923,12192524,12193098,12194032,12194618,12202171,12209228	0.888889
right_lobe_of_liver_female_adult_53_years	chr12	7493190	7493245	7493196	+	High_confidence	61	62	360	10.298554	6.319882	chr12	7493019	7493427	LTR|ERVL-MaLR|MLT1J-int	+	chr12	7493213	7496299	STRG.66098.1	+	7493213	7496299	0.875000
right_lobe_of_liver_female_adult_53_years	chr16	72014264	72014307	72014264	-	High_confidence	4	4	13	0.371892	3.251629	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72011084	72014087	STRG.82093.1	-	72011084	72014087	0.769231
right_lobe_of_liver_female_adult_53_years	chr19	15643632	15643633	15643632	+	RAMPAGE_only	12	12	17	0.486321	3.750000	chr19	15643431	15643877	LTR|ERVL|MLT2B2	-	chr19	15641308	15659771	CYP4F3|ENST00000585846.1	+	15641308,15643906,15647051,15647196,15649159,15649912,15652568,15652822,15658263,15658490,15658726,15659219	15641613,15644051,15647105,15647324,15649281,15650183,15652635,15652952,15658397,15658555,15658809,15659771	0.705882
right_lobe_of_liver_female_adult_53_years	chr2	20207648	20207675	20207648	-	RAMPAGE_only	3	3	13	0.371892	3.392747	chr2	20207439	20207729	SINE|Alu|AluSz	+	chr2	20204001	20223388	SDC1|ENST00000482879.5	-	20204001,20205342,20223202	20204291,20205424,20223388	0.538462
right_lobe_of_liver_female_adult_53_years	chr14	34536100	34536110	34536109	-	High_confidence	8	8	13	0.371892	3.251629	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.923077
right_lobe_of_liver_female_adult_53_years	chr4	153819424	153819425	153819424	+	RAMPAGE_only	11	12	12	0.343285	3.418296	chr4	153818041	153821399	LINE|L1|L1PA10	+	chr4	154562955	154571086	FGB|ENST00000302068.8	+	154562955,154565807,154566488,154567592,154568380,154569181,154569513,154570418	154563132,154565999,154566672,154567820,154568494,154569307,154569799,154571086	1.000000
right_lobe_of_liver_female_adult_53_years	chr7	99657069	99657094	99657069	-	RAMPAGE_only	2	2	9	0.257464	3.000000	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648197	99660602	STRG.44969.25	-	99648197,99650072,99652552	99648400,99650232,99660602	0.888889
right_lobe_of_liver_female_adult_53_years	chr10	79424609	79424649	79424648	-	RAMPAGE_only	23	24	61	1.745033	5.113126	chr10	79424376	79424743	LINE|L2|L2	+	chr10	79386036	79444219	ZCCHC24|ENST00000372333.3	-	79386036,79394275,79432557,79444101	79386458,79394440,79432758,79444219	0.688525
right_lobe_of_liver_female_adult_53_years	chr11	58943649	58943652	58943649	+	High_confidence	211	213	316	9.039842	5.827050	chr11	58943541	58944242	LTR|ERV1|MER57-int	+	chr11	58943370	58955334	GLYATL1|ENST00000524881.5	+	58943370,58943542,58947045,58947857,58954769,58955175	58943460,58943666,58947165,58947965,58954896,58955334	0.895570
right_lobe_of_liver_female_adult_53_years	chr5	139364709	139364737	139364718	+	RAMPAGE_only	4	5	18	0.514928	3.734522	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.611111
right_lobe_of_liver_female_adult_53_years	chr11	63167979	63167980	63167979	-	RAMPAGE_only	6	6	7	0.200250	2.584963	chr11	63166880	63172605	LINE|L1|L1PA8	+	chr11	63163829	63173180	STRG.62765.9	-	63163829,63166043	63164634,63173180	0.857143
right_lobe_of_liver_female_adult_53_years	chr9	82582118	82582120	82582119	-	RAMPAGE_only	12	16	21	0.600749	3.746439	chr9	82581821	82582390	DNA|TcMar-Tigger|MER6A	-	chr9	82559319	82563125	STRG.54120.1	-	82559319,82562869	82562369,82563125	0.857143
right_lobe_of_liver_female_adult_53_years	chr13	21533619	21533620	21533619	-	RAMPAGE_only	18	18	22	0.629356	3.697846	chr13	21533324	21533620	SINE|Alu|AluY	-	chr13	20723547	20723943	STRG.70405.1	-	20723547	20723943	1.000000
right_lobe_of_liver_female_adult_53_years	chr19	40280802	40280832	40280831	-	High_confidence	15	15	36	1.029855	3.369278	chr19	40280545	40281038	LINE|L2|L2a	+	chr19	40242039	40280832	AKT2|ENST00000486368.6	-	40242039,40242533,40255157,40256925,40265221,40280781	40242069,40242687,40255269,40257054,40265351,40280832	0.861111
right_lobe_of_liver_female_adult_53_years	chr7	5514100	5514122	5514100	-	High_confidence	1	1	7	0.200250	2.584963	chr7	5513926	5514323	LINE|L2|L2a	+	chr7	5475796	5513798	FBXL18|NM_024963.5	-	5475796,5491230,5500487,5505411,5513656	5481931,5491449,5502031,5505630,5513798	0.571429
right_lobe_of_liver_female_adult_53_years	chr1	108939644	108939645	108939644	-	RAMPAGE_only	7	7	9	0.257464	3.000000	chr1	108939309	108939608	SINE|Alu|AluY	-	chr1	108929507	108947881	STRG.4165.3	-	108929507,108934619,108937076,108939635,108940044,108941404,108943474,108943835,108947610	108932501,108934942,108937418,108939782,108940142,108941498,108943615,108944057,108947881	0.888889
right_lobe_of_liver_female_adult_53_years	chr2	182928788	182928846	182928788	-	RAMPAGE_only	24	32	59	1.687819	4.737155	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.830508
right_lobe_of_liver_female_adult_53_years	chr2	55615602	55615686	55615661	-	High_confidence	7	7	36	1.029855	3.664903	chr2	55615580	55615882	SINE|Alu|AluSc	+	chr2	55598697	55616617	PPP4R3B|ENST00000470801.1	-	55598697,55603977,55615450,55616517	55599039,55604076,55615506,55616617	0.972222
right_lobe_of_liver_female_adult_53_years	chr17	1744547	1744552	1744551	+	RAMPAGE_only	13	21	42	1.201498	4.127569	chr17	1744527	1744688	SINE|MIR|MIRc	-	chr17	1743025	1755268	SERPINF2|ENST00000382061.4	+	1743025,1744991,1745174,1745332,1745707,1747018,1747308,1748597,1752585,1754121	1743076,1745058,1745213,1745395,1745909,1747162,1747512,1748740,1752790,1755268	0.976190
right_lobe_of_liver_female_adult_53_years	chr1	56959563	56959610	56959601	-	RAMPAGE_only	3	5	27	0.772392	4.023465	chr1	56959222	56959568	LINE|L2|L2c	-	chr1	56929209	56966015	C8B|ENST00000371237.8	-	56929209,56931809,56933334,56940848,56943695,56945820,56949554,56952047,56954685,56956768,56960019,56965856	56929558,56931878,56933488,56941012,56943824,56946061,56949752,56952180,56954827,56956910,56960176,56966015	0.851852
right_lobe_of_liver_female_adult_53_years	chrX	106902461	106902474	106902473	+	RAMPAGE_only	3	3	8	0.228857	2.807355	chrX	106902293	106902548	LINE|L2|L2c	+	chrX	106900198	106931286	STRG.97372.1	+	106900198,106928050,106930803	106900504,106930729,106931286	0.625000
right_lobe_of_liver_female_adult_53_years	chr7	17099690	17099691	17099690	+	RAMPAGE_only	5	5	7	0.200250	2.807355	chr7	17099547	17099907	LINE|RTE-BovB|MamRTE1	-	chr7	17132189	17346150	AHR|ENST00000642825.1	+	17132189,17204702,17246973,17296296,17296491,17309935,17322500,17327758,17329951,17330755,17333911,17334886,17335644,17338985,17342920	17132541,17204765,17247726,17296385,17296624,17310123,17322607,17327848,17330075,17330886,17334114,17334996,17335786,17340228,17346150	0.571429
right_lobe_of_liver_female_adult_53_years	chr10	35352702	35352738	35352737	+	RAMPAGE_only	624	627	1124	32.154373	6.000072	chr10	35352603	35352744	LINE|L2|L2c	-	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.954626
right_lobe_of_liver_female_adult_53_years	chr3	187075678	187076676	187076479	+	RAMPAGE_only	197	197	3445	98.551437	7.108020	chr3	187076438	187076681	LINE|L2|L2c	-	chr3	187071973	187078551	ST6GAL1|ENST00000470633.1	+	187071973,187073404,187075561	187072947,187074333,187078551	0.998549
right_lobe_of_liver_female_adult_53_years	chr18	8376199	8376200	8376199	+	RAMPAGE_only	11	11	12	0.343285	2.913977	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8370932	8379313	PTPRM|ENST00000583153.2	+	8370932,8371759,8376045,8376461,8378264,8379166	8371006,8371810,8376200,8376597,8378414,8379313	0.916667
right_lobe_of_liver_female_adult_53_years	chr6	53564830	53564853	53564845	-	RAMPAGE_only	4	5	12	0.343285	3.277613	chr6	53564734	53564890	SINE|MIR|MIRb	-	chr6	53561288	53573275	LOC101927136|NR_110840.1	-	53561288,53564749,53569422,53573199	53564420,53564889,53569605,53573275	0.916667
right_lobe_of_liver_female_adult_53_years	chr3	28347630	28347654	28347646	-	High_confidence	5	5	17	0.486321	3.875000	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.764706
right_lobe_of_liver_female_adult_53_years	chr11	95794288	95794358	95794354	+	High_confidence	78	84	696	19.910537	6.037695	chr11	95794328	95794625	LINE|L1|L1M5	-	chr11	95794261	95831167	STRG.64515.1	+	95794261,95795515,95799231,95812931,95813467,95817786,95818826,95821870,95822498,95827785,95829186,95831025	95794533,95795559,95799388,95813111,95813589,95817903,95818904,95821978,95822576,95828027,95829331,95831167	0.959770
right_lobe_of_liver_female_adult_53_years	chr11	126327865	126327903	126327899	+	High_confidence	29	34	287	8.210236	6.771430	chr11	126327772	126328221	LINE|L2|L2a	-	chr11	126327865	126345754	DCPS|ENST00000648516.1	+	126327865,126328744,126330193,126331404,126338285,126343306,126345346	126328057,126328888,126330436,126331550,126338399,126343417,126345754	0.738676
right_lobe_of_liver_female_adult_53_years	chr1	149229339	149229368	149229367	-	RAMPAGE_only	9	11	25	0.715177	4.251629	chr1	149229335	149229457	SINE|MIR|MIR3	+	chr1	149196677	149285820	STRG.5177.2	-	149196677,149198360,149201013,149240376,149261639,149266968,149285453	149198171,149198484,149201090,149240487,149261791,149267024,149285820	0.720000
right_lobe_of_liver_female_adult_53_years	chr3	15738511	15738512	15738511	+	High_confidence	153	164	164	4.691563	4.691489	chr3	15738158	15739435	LTR|ERVK|MER11B	-	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.993902
right_lobe_of_liver_female_adult_53_years	chr1	205099780	205099811	205099810	-	RAMPAGE_only	4	4	10	0.286071	3.121928	chr1	205099767	205099820	LINE|RTE-BovB|MamRTE1	-	chr1	205086141	205122015	RBBP5|ENST00000367164.1	-	205086141,205094986,205096681,205097325,205098988,205099740,205099910,205100151,205101599,205103856,205105027,205114788,205115857,205121854	205088815,205095064,205096911,205097395,205099106,205099812,205100064,205100271,205101709,205104019,205105168,205114961,205115883,205122015	0.900000
right_lobe_of_liver_female_adult_53_years	chr4	22714091	22714092	22714091	+	High_confidence	13	13	14	0.400499	3.546594	chr4	22714022	22714187	LTR|ERV1|LTR78	-	chr4	22714088	22819527	GBA3|ENST00000511446.2	+	22714088,22735980,22747295,22748836,22818720	22714150,22736208,22748092,22748960,22819527	0.571429
right_lobe_of_liver_female_adult_53_years	chr4	76273190	76273196	76273195	+	RAMPAGE_only	6	6	14	0.400499	3.664498	chr4	76273106	76273377	DNA|TcMar-Tigger|MER44B	-	chr4	76251740	76283754	FAM47E|ENST00000424749.6	+	76251740,76256177,76263703,76268659,76271567,76278068,76280263,76283380	76251820,76256523,76263843,76268768,76271768,76278224,76280341,76283754	0.785714
right_lobe_of_liver_female_adult_53_years	chr3	134485416	134485490	134485443	-	High_confidence	10	10	102	2.917924	5.604535	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.892157
right_lobe_of_liver_female_adult_53_years	chr4	73383646	73383660	73383659	+	RAMPAGE_only	21	21	35	1.001248	4.354852	chr4	73382825	73383876	LINE|L1|L1MC1	-	chr4	73397113	73409457	ALB|ENST00000441319.5	+	73397113,73404368,73405115,73406628,73408593,73409354	73397160,73404406,73405173,73406761,73408805,73409457	0.857143
right_lobe_of_liver_female_adult_53_years	chr6	53564783	53564810	53564783	-	RAMPAGE_only	6	6	16	0.457713	3.875000	chr6	53564734	53564890	SINE|MIR|MIRb	-	chr6	53561288	53573275	LOC101927136|NR_110840.1	-	53561288,53564749,53569422,53573199	53564420,53564889,53569605,53573275	1.000000
right_lobe_of_liver_female_adult_53_years	chr8	26366349	26366396	26366395	+	RAMPAGE_only	8	9	32	0.915427	3.718139	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	64242588	64242620	64242619	+	High_confidence	13	13	21	0.600749	3.784184	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.952381
right_lobe_of_liver_female_adult_53_years	chr22	46637366	46637386	46637385	+	RAMPAGE_only	6	6	20	0.572142	4.121928	chr22	46637256	46637538	SINE|Alu|AluYc	-	chr22	46626760	46679790	GRAMD4|ENST00000361034.7	+	46626760,46637839,46658186,46661380,46663039,46663837,46664025,46665614,46666824,46668095,46668688,46668798,46672842,46673669,46674656,46675467,46676599,46677146	46626961,46637960,46658307,46661442,46663172,46663863,46664117,46665706,46666873,46668167,46668732,46668908,46672997,46673814,46674750,46675552,46676668,46679790	0.800000
right_lobe_of_liver_female_adult_53_years	chr9	20658303	20658339	20658338	+	High_confidence	4	5	16	0.457713	3.274397	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.750000
right_lobe_of_liver_female_adult_53_years	chr6	106774806	106774826	106774806	-	High_confidence	2	2	7	0.200250	2.521641	chr6	106774792	106775067	DNA|hAT-Charlie|MER20B	+	chr6	106770125	106775004	LINC02532|ENST00000602934.1	-	106770125,106774776	106772361,106775004	0.571429
right_lobe_of_liver_female_adult_53_years	chr1	6639923	6639973	6639923	-	RAMPAGE_only	10	10	32	0.915427	4.228073	chr1	6639724	6639885	SINE|MIR|MIR	-	chr1	6634167	6645057	DNAJC11|ENST00000465508.5	-	6634167,6636116,6637197,6637446,6639901,6644557,6645040	6635700,6636246,6637340,6638364,6640057,6644674,6645057	0.937500
right_lobe_of_liver_female_adult_53_years	chr11	64226142	64226180	64226158	-	High_confidence	54	57	293	8.381878	6.745795	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.993174
right_lobe_of_liver_female_adult_53_years	chr2	20596468	20596470	20596469	+	High_confidence	8	11	13	0.371892	3.085055	chr2	20596294	20596659	LTR|ERVL-MaLR|MLT1A0	+	chr2	20597362	20598448	STRG.10347.1	+	20597362	20598448	0.846154
right_lobe_of_liver_female_adult_53_years	chr2	24887184	24887185	24887184	-	RAMPAGE_only	10	10	10	0.286071	2.721928	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24841324	24878027	ADCY3|ENST00000433852.1	-	24841324,24841555,24842253,24872569,24877921	24841386,24841667,24842384,24872719,24878027	0.900000
right_lobe_of_liver_female_adult_53_years	chr18	31554911	31554923	31554911	-	RAMPAGE_only	4	4	8	0.228857	2.807355	chr18	31554889	31555114	LTR|ERV1|LTR26D	+	chr18	31542145	31556911	DSG2-AS1|ENST00000583706.5	-	31542145,31543101,31545735,31550037,31554641,31555962	31542321,31543395,31545906,31550397,31554715,31556911	0.625000
right_lobe_of_liver_female_adult_53_years	chr10	95517578	95517608	95517578	-	RAMPAGE_only	5	5	15	0.429106	3.521641	chr10	95517374	95517682	LINE|L2|L2b	+	chr10	95399016	95520033	STRG.59519.8	-	95399016,95406117,95410632,95421960,95432447,95437489,95441125,95491034,95516756	95399189,95406147,95410777,95422073,95432576,95437555,95441180,95491120,95520033	0.933333
right_lobe_of_liver_female_adult_53_years	chr1	200298400	200298403	200298400	-	High_confidence	5	5	9	0.257464	3.000000	chr1	200297863	200298573	LINE|L2|L2c	+	chr1	200297898	200298390	STRG.7534.1	-	200297898	200298390	0.666667
right_lobe_of_liver_female_adult_53_years	chr6	31587243	31587275	31587258	+	High_confidence	8	9	29	0.829606	4.162295	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	0.896552
right_lobe_of_liver_female_adult_53_years	chr16	10532114	10532118	10532117	-	RAMPAGE_only	11	11	19	0.543535	3.503258	chr16	10532094	10532204	DNA|hAT-Charlie|MER5A	-	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.947368
right_lobe_of_liver_female_adult_53_years	chr1	174874418	174874458	174874418	+	RAMPAGE_only	4	5	17	0.486321	3.969816	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174700730	174990341	RABGAP1L|ENST00000469553.6	+	174700730,174702112,174752312,174811831,174877391,174957456,174957890,174969276,174976077,174978806,174982833,174988640,174989848	174700865,174702256,174752354,174811960,174877605,174957549,174958173,174969387,174976182,174978890,174982905,174988838,174990341	0.764706
right_lobe_of_liver_female_adult_53_years	chr6	31587007	31587010	31587009	+	High_confidence	6	10	13	0.371892	3.418296	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.692308
right_lobe_of_liver_female_adult_53_years	chr8	118383288	118383310	118383309	-	RAMPAGE_only	7	11	26	0.743784	4.546594	chr8	118383163	118383439	LINE|L2|L2b	-	chr8	118377987	118621945	SAMD12|NM_207506.2	-	118377987,118439831,118580714,118621803	118379700,118439961,118580893,118621945	0.615385
right_lobe_of_liver_female_adult_53_years	chr7	80374423	80374450	80374423	-	High_confidence	112	136	583	16.677935	5.950679	chr7	80374347	80374986	LINE|RTE-X|L4_B_Mam	+	chr7	80371516	80374439	LOC101927269|NR_110075.1	-	80371516,80372126,80373811,80374340	80371577,80372294,80373990,80374439	0.936535
right_lobe_of_liver_female_adult_53_years	chrX	30693617	30693618	30693617	+	RAMPAGE_only	5	5	8	0.228857	3.000000	chrX	30693536	30693848	SINE|Alu|AluSz	-	chrX	30689471	30700885	GK|ENST00000488296.1	+	30689471,30691122,30694399,30696041,30696616,30700413,30700837	30689628,30691199,30694537,30696151,30696683,30700449,30700885	0.500000
right_lobe_of_liver_female_adult_53_years	chrX	131389057	131389096	131389057	-	RAMPAGE_only	2	2	10	0.286071	2.947703	chrX	131388812	131389115	SINE|Alu|AluYe6	-	chrX	131362478	131399864	STRG.98042.2	-	131362478,131368367,131368951,131389016,131399573	131364926,131368449,131369052,131389148,131399864	0.900000
right_lobe_of_liver_female_adult_53_years	chr17	59839111	59839136	59839135	+	RAMPAGE_only	2	3	6	0.171643	2.584963	chr17	59838987	59839290	SINE|Alu|AluSq2	-	chr17	59837930	59842255	VMP1|ENST00000592790.1	+	59837930	59842255	1.000000
right_lobe_of_liver_female_adult_53_years	chr6	34757060	34757101	34757100	+	High_confidence	7	7	38	1.087070	4.431624	chr6	34757127	34757285	LINE|L2|L2a	+	chr6	34757093	34773857	SNRPC|NR_029472.1	+	34757093,34762594,34767907,34770290,34773445	34757551,34762703,34767997,34770395,34773857	1.000000
right_lobe_of_liver_female_adult_53_years	chr8	80485592	80485619	80485592	+	High_confidence	9	9	38	1.087070	5.003258	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.763158
right_lobe_of_liver_female_adult_53_years	chr20	37344712	37344725	37344712	+	High_confidence	32	51	105	3.003745	5.680941	chr20	37344715	37344779	SINE|MIR|MIRc	+	chr20	37344715	37405182	STRG.91189.1	+	37344715,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170,37404418	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37404028,37405182	0.752381
right_lobe_of_liver_female_adult_53_years	chr13	77975477	77975527	77975521	-	High_confidence	21	21	69	1.973889	3.748191	chr13	77975208	77975612	LTR|ERV1|HERVE_a-int	-	chr13	77895480	77975529	EDNRB|ENST00000646948.1	-	77895480,77899858,77900520,77901057,77903155,77903494,77918090,77975346	77898334,77899967,77900654,77901207,77903360,77903607,77918624,77975529	0.927536
right_lobe_of_liver_female_adult_53_years	chr6	88662556	88662575	88662556	+	High_confidence	3	3	8	0.228857	3.000000	chr6	88662592	88670501	LTR|ERV1|HERVE-int	+	chr6	88662493	88670799	STRG.38323.3	+	88662493,88668141	88662858,88670799	0.875000
right_lobe_of_liver_female_adult_53_years	chrX	85090621	85090633	85090621	+	RAMPAGE_only	2	3	6	0.171643	2.584963	chrX	85090484	85090821	LINE|L2|L2c	+	chrX	85046300	85093316	APOOL|ENST00000613473.1	+	85046300,85046338,85046445,85051388,85054343,85055826,85067126,85073997,85074273,85087589	85046309,85046344,85046550,85051508,85054398,85055925,85067218,85074111,85074391,85093316	1.000000
right_lobe_of_liver_female_adult_53_years	chr19	51350631	51350633	51350632	-	RAMPAGE_only	4	6	8	0.228857	2.750000	chr19	51350478	51350770	SINE|Alu|AluSx1	-	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.625000
right_lobe_of_liver_female_adult_53_years	chr11	307580	307581	307580	-	RAMPAGE_only	6	6	6	0.171643	2.584963	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	0.833333
right_lobe_of_liver_female_adult_53_years	chr14	39093189	39093190	39093189	-	RAMPAGE_only	4	5	7	0.200250	2.584963	chr14	39092847	39093165	SINE|Alu|AluY	-	chr14	39031918	39088723	SEC23A|ENST00000537403.5	-	39031918,39039030,39040731,39042785,39045162,39048651,39055142,39061764,39063323,39064912,39067172,39074414,39075934,39085761,39086928,39087523	39033328,39039096,39040887,39042872,39045324,39048729,39055296,39061871,39063413,39064993,39067296,39074530,39076093,39085906,39087008,39088723	0.857143
right_lobe_of_liver_female_adult_53_years	chr22	50756926	50756950	50756949	+	High_confidence	6	6	11	0.314678	3.459432	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.727273
right_lobe_of_liver_female_adult_53_years	chr3	146222301	146222319	146222318	-	High_confidence	14	14	57	1.630604	4.957902	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146194356	146222371	STRG.22823.4	-	146194356,146195123,146196631,146199812,146201034,146206525,146220814,146222064,146222199	146194455,146195282,146196793,146200039,146201077,146206761,146220925,146222092,146222371	0.982456
right_lobe_of_liver_female_adult_53_years	chr14	77736978	77736994	77736978	-	High_confidence	10	11	16	0.457713	3.640224	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.875000
right_lobe_of_liver_female_adult_53_years	chr18	26753761	26753808	26753783	-	High_confidence	16	16	59	1.687819	4.548794	chr18	26753589	26753863	LTR|ERVL|MLT2D	-	chr18	26747450	26754134	STRG.85985.2	-	26747450,26753638	26748159,26754134	0.898305
right_lobe_of_liver_female_adult_53_years	chr11	65434588	65434961	65434819	+	RAMPAGE_only	28	32	415	11.871944	6.697815	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65423637	65445540	STRG.62879.5	+	65423637,65434274	65434178,65445540	0.997590
right_lobe_of_liver_female_adult_53_years	chr10	44990430	44990431	44990430	+	High_confidence	32	32	40	1.144284	4.734512	chr10	44990231	44990788	LTR|ERV1|MER34A1	-	chr10	44990537	44991970	RASSF4|ENST00000493490.1	+	44990537,44990947,44991904	44990828,44991069,44991970	0.775000
right_lobe_of_liver_female_adult_53_years	chr4	68948114	68948165	68948114	-	High_confidence	75	86	174	4.977634	6.462501	chr4	68946743	68948416	DNA|TcMar-Tigger|Tigger1	-	chr4	68929449	68948445	STRG.26476.3	-	68929449,68930545,68931154,68932627,68945305,68948009	68930092,68930765,68931242,68932759,68945454,68948445	0.908046
right_lobe_of_liver_female_adult_53_years	chr1	176162919	176162963	176162937	-	RAMPAGE_only	10	17	35	1.001248	4.822001	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.685714
right_lobe_of_liver_female_adult_53_years	chr12	113422205	113422212	113422211	+	High_confidence	4	4	8	0.228857	2.807355	chr12	113422145	113422229	SINE|MIR|MIRc	+	chr12	113422452	113428070	SDSL|ENST00000547802.1	+	113422452,113427961	113422887,113428070	0.500000
right_lobe_of_liver_female_adult_53_years	chrX	7147267	7147288	7147287	+	High_confidence	66	67	116	3.318423	5.505046	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147298	7354636	STRG.94812.1	+	7147298,7190883,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147606,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354636	0.982759
right_lobe_of_liver_female_adult_53_years	chr1	9239806	9239876	9239843	+	High_confidence	118	121	680	19.452824	7.111803	chr1	9239801	9239853	LINE|Penelope|Penelope1_Vert	+	chr1	9239843	9271337	H6PD|NM_001282587.1	+	9239843,9244924,9246965,9262058,9263508	9240018,9245561,9247083,9262328,9271337	0.850000
right_lobe_of_liver_female_adult_53_years	chr5	31551429	31551430	31551429	+	RAMPAGE_only	10	10	10	0.286071	2.921928	chr5	31551437	31551891	LTR|ERVL-MaLR|MLT1D	+	chr5	31545670	31554839	C5orf22|ENST00000504866.1	+	31545670,31548489,31551292,31552772	31545712,31548687,31551432,31554839	1.000000
right_lobe_of_liver_female_adult_53_years	chr12	20822547	20822553	20822547	+	RAMPAGE_only	8	8	15	0.429106	3.773557	chr12	20822186	20822617	LTR|ERV1|LTR7	-	chr12	20815673	21090245	AC011604.2|ENST00000540229.1	+	20815673,20855027,20858438,20861016,20862411,20862755,20875234,20877771,20879435,20880854,20883417,20898435,20901349,21067318,21076451,21089907	20815822,20855169,20858571,20861138,20862558,20862854,20875477,20877936,20879631,20881020,20883602,20898500,20901467,21067383,21076569,21090245	0.733333
right_lobe_of_liver_female_adult_53_years	chr1	196794142	196794225	196794173	+	RAMPAGE_only	37	38	79	2.259960	4.170564	chr1	196794183	196794475	SINE|Alu|AluSx	+	chr1	196774815	196797782	STRG.7464.9	+	196774815,196779161,196779796,196788215,196790044,196793316,196794598	196774944,196779356,196779973,196788398,196790227,196794508,196797782	0.936709
right_lobe_of_liver_female_adult_53_years	chr7	99671759	99671805	99671804	-	RAMPAGE_only	7	11	33	0.944034	4.607264	chr7	99671798	99672025	LINE|L1|L1MD2	+	chr7	99648197	99679953	STRG.44969.11	-	99648197,99650072,99652552,99660498,99662815,99663967,99665165,99666600,99666951,99674532,99676114,99679825	99648400,99650232,99652779,99660659,99662882,99664095,99665314,99666689,99672679,99674585,99676208,99679953	0.909091
right_lobe_of_liver_female_adult_53_years	chr4	48805141	48805165	48805159	+	High_confidence	203	226	516	14.761260	7.011656	chr4	48805071	48805471	LTR|ERVL-MaLR|MLT1F	+	chr4	48805211	48850036	OCIAD1|ENST00000504654.5	+	48805211,48830576,48832619,48833400,48842635,48848398,48849946	48805330,48830673,48832682,48833481,48842689,48848446,48850036	0.755814
right_lobe_of_liver_female_adult_53_years	chr5	30197988	30197992	30197991	+	High_confidence	9	11	19	0.543535	3.836592	chr5	30197738	30198183	LTR|ERV1|LTR12B	+	chr5	30198007	30204921	STRG.29832.1	+	30198007,30204415	30198214,30204921	0.947368
right_lobe_of_liver_female_adult_53_years	chr3	134485367	134485388	134485387	-	High_confidence	4	6	13	0.371892	3.238901	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	1.000000
right_lobe_of_liver_female_adult_53_years	chr10	77498960	77498961	77498960	-	High_confidence	7	8	10	0.286071	3.121928	chr10	77498859	77499086	SINE|MIR|MIR	+	chr10	77183472	77498970	KCNMA1|ENST00000640311.1	-	77183472,77184822,77251194,77403861,77493797,77498583	77183532,77184916,77251256,77404023,77493929,77498970	0.600000
right_lobe_of_liver_female_adult_53_years	chr1	205512298	205512320	205512316	+	RAMPAGE_only	78	79	161	4.605742	6.334487	chr1	205512088	205512401	LINE|L2|L2	-	chr1	205504801	205527825	CDK18|ENST00000419301.1	+	205504801,205523146,205523482,205524231,205525138,205526064,205526366,205526774,205527793	205504878,205523297,205523715,205524357,205525195,205526179,205526461,205526837,205527825	0.819876
right_lobe_of_liver_female_adult_53_years	chr7	2679613	2679639	2679623	+	High_confidence	3	3	13	0.371892	3.251629	chr7	2679559	2679674	LINE|L2|L2c	-	chr7	2679521	2716529	AMZ1|NM_133463.3	+	2679521,2700233,2702721,2708587,2709074,2709639,2712329	2679671,2700755,2702889,2708716,2709244,2709816,2716529	0.923077
right_lobe_of_liver_female_adult_53_years	chr5	50717842	50717872	50717842	+	High_confidence	3	5	15	0.429106	3.640224	chr5	50717031	50718144	LINE|L2|L2a	-	chr5	50717397	50719082	STRG.30286.1	+	50717397	50719082	0.933333
right_lobe_of_liver_female_adult_53_years	chr6	154441500	154441538	154441525	-	RAMPAGE_only	19	26	73	2.088318	5.758184	chr6	154441482	154441660	SINE|Alu|AluSx	-	chr6	154405462	154434073	CNKSR3|ENST00000433165.6	-	154405462,154410342,154410933,154414298,154422505,154422914,154428127,154430471,154433465,154433778	154406652,154410432,154411142,154414423,154422652,154422983,154428187,154430591,154433507,154434073	0.767123
right_lobe_of_liver_female_adult_53_years	chr12	124355447	124355448	124355447	-	RAMPAGE_only	13	13	13	0.371892	2.931209	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124324415	124422554	NCOR2|ENST00000356219.7	-	124324415,124326190,124327408,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124398118,124400500,124402403,124419956,124422500	124325583,124326370,124327633,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362297,124363799,124372610,124374463,124378384,124385887,124398181,124400673,124402561,124420055,124422554	1.000000
right_lobe_of_liver_female_adult_53_years	chr14	88027041	88027048	88027047	+	RAMPAGE_only	9	10	22	0.629356	4.070656	chr14	88026937	88027350	LINE|L2|L2c	-	chr14	88024613	88107755	STRG.75553.1	+	88024613,88044614,88079103,88084036,88090022	88037439,88044848,88079368,88087037,88107755	0.909091
right_lobe_of_liver_female_adult_53_years	chr9	34641294	34641330	34641329	+	RAMPAGE_only	6	6	16	0.457713	3.452820	chr9	34641261	34641421	SINE|Alu|AluJb	-	chr9	34646588	34650598	GALT|NM_000155.3	+	34646588,34647088,34647491,34647656,34647831,34648114,34648333,34648761,34648997,34649409,34650368	34646786,34647258,34647567,34647705,34647961,34648171,34648456,34648894,34649081,34649564,34650598	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	18706988	18706992	18706991	-	High_confidence	7	7	12	0.343285	3.277613	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18705417	18706129	IGSF22|ENST00000510673.1	-	18705417,18705816	18705617,18706129	0.500000
right_lobe_of_liver_female_adult_53_years	chr14	73366936	73366963	73366936	-	High_confidence	3	3	14	0.400499	3.700440	chr14	73366875	73367023	SINE|MIR|MIRb	+	chr14	73276548	73366920	NUMB|ENST00000560335.5	-	73276548,73282358,73287109,73292733,73297210,73316389,73323129,73355625,73366896	73277293,73282505,73287314,73292874,73297285,73316422,73323204,73355766,73366920	0.785714
right_lobe_of_liver_female_adult_53_years	chr7	7751721	7751732	7751721	+	RAMPAGE_only	3	3	9	0.257464	2.750000	chr7	7751693	7751981	DNA|hAT-Tip100|Arthur1B	+	chr7	7772360	7879223	UMAD1|ENST00000406829.2	+	7772360,7801669,7877280	7772454,7801743,7879223	0.888889
right_lobe_of_liver_female_adult_53_years	chr16	28688557	28688596	28688595	+	High_confidence	7	7	28	0.800999	3.413800	chr16	28688394	28688869	LTR|ERVL|LTR41B	+	chr16	28688557	28735730	EIF3C|NM_001199142.1	+	28688557,28711656,28713700,28713908,28714320,28714635,28714818,28715306,28723163,28723447,28724321,28724657,28724918,28726604,28727020,28731828,28734519,28734777,28734931,28735172,28735430	28688828,28711787,28713766,28714098,28714446,28714690,28714928,28715434,28723323,28723551,28724463,28724783,28725012,28726795,28727245,28732192,28734679,28734843,28735019,28735335,28735730	1.000000
right_lobe_of_liver_female_adult_53_years	chr5	42517368	42517384	42517372	+	RAMPAGE_only	6	6	15	0.429106	3.664498	chr5	42517336	42517454	LINE|L2|L2a	+	chr5	42548042	42721878	GHR|ENST00000618088.4	+	42548042,42565863,42629037,42688889,42694916,42699823,42711206,42713428,42718051,42718452	42548151,42565944,42629103,42689019,42695089,42700002,42711372,42713519,42718121,42721878	0.666667
right_lobe_of_liver_female_adult_53_years	chr5	32403115	32403169	32403148	-	RAMPAGE_only	67	75	192	5.492562	5.699521	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354851	32444726	STRG.29873.2	-	32354851,32363947,32364163,32379114,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444726	0.984375
right_lobe_of_liver_female_adult_53_years	chr11	58927809	58927817	58927809	+	High_confidence	5	6	12	0.343285	3.277613	chr11	58927656	58928383	LTR|ERVK|HERVK22-int	-	chr11	58927700	58956405	GLYATL1|ENST00000317391.8	+	58927700,58942539,58943542,58947045,58947857,58954769,58955175,58955609	58927829,58942584,58943666,58947165,58947965,58954896,58955353,58956405	0.916667
right_lobe_of_liver_female_adult_53_years	chr16	48353034	48353090	48353035	+	RAMPAGE_only	16	27	68	1.945282	5.112428	chr16	48352977	48353104	SINE|MIR|MIRb	+	chr16	48244387	48362737	STRG.81026.1	+	48244387,48252130,48256609,48258617,48261423,48262777,48270015,48277337,48296014,48299661,48303171,48334215,48347506,48348099,48351580,48354118,48361476,48361853	48244621,48252365,48256741,48258740,48261587,48262872,48270274,48277479,48296165,48299788,48303305,48334358,48347714,48348290,48354086,48356710,48361759,48362737	0.970588
right_lobe_of_liver_female_adult_53_years	chr8	123202348	123202415	123202414	-	High_confidence	5950	6152	11863	339.365950	4.266089	chr8	123202116	123202636	LINE|L2|L2b	+	chr8	123201171	123202743	FAM83A-AS1|ENST00000520576.5	-	123201171,123202207	123201982,123202743	0.982466
right_lobe_of_liver_female_adult_53_years	chrX	47179145	47179159	47179158	+	High_confidence	4	4	9	0.257464	2.947703	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	1.000000
right_lobe_of_liver_female_adult_53_years	chr17	6695739	6695755	6695739	-	High_confidence	3	3	10	0.286071	2.846439	chr17	6695388	6695690	SINE|Alu|AluSc8	-	chr17	6689961	6695889	SLC13A5|ENST00000572727.1	-	6689961,6690778,6693043,6694096,6695725	6690033,6690940,6693162,6694197,6695889	0.600000
right_lobe_of_liver_female_adult_53_years	chr11	116830288	116830319	116830288	+	High_confidence	2	3	15	0.429106	3.378783	chr11	116830199	116830385	SINE|MIR|MIR3	-	chr11	116830528	116833071	APOC3|ENST00000630701.1	+	116830528,116830772,116832763	116830637,116830896,116833071	0.866667
right_lobe_of_liver_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	440	457	2173	62.163214	6.686782	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.538426
right_lobe_of_liver_female_adult_53_years	chr16	15006394	15006569	15006394	+	RAMPAGE_only	88	90	195	5.578383	5.631575	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.641026
right_lobe_of_liver_female_adult_53_years	chr1	20028387	20028408	20028407	+	High_confidence	16	19	32	0.915427	4.760648	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028429	20091158	PLA2G5|ENST00000465698.5	+	20028429,20059631,20068872,20084820,20086082,20088824,20089788,20090567	20028709,20059692,20069032,20084870,20086227,20088943,20089895,20091158	0.750000
right_lobe_of_liver_female_adult_53_years	chr3	146222436	146222472	146222466	-	High_confidence	116	127	389	11.128159	6.518609	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146200008	146222433	PLSCR4|ENST00000481701.5	-	146200008,146201034,146206525,146220814,146222064,146222199	146200039,146201077,146206761,146220925,146222092,146222433	0.943445
right_lobe_of_liver_female_adult_53_years	chr3	182873971	182873997	182873996	+	High_confidence	5	5	16	0.457713	4.000000	chr3	182874046	182874599	DNA|hAT-Charlie|Cheshire	+	chr3	182873965	182919063	ATP11B|ENST00000466758.5	+	182873965,182879495,182880878,182884752,182885950,182887585,182889409,182896699,182897302,182898606,182902480,182908458,182913860,182918022	182874015,182879649,182880947,182884898,182886010,182887713,182889548,182896765,182897406,182898772,182902566,182908505,182913994,182919063	0.812500
right_lobe_of_liver_female_adult_53_years	chr9	75078394	75078426	75078425	-	RAMPAGE_only	2	2	6	0.171643	2.584963	chr9	75078424	75078491	LINE|L2|L2c	+	chr9	75061201	75088135	STRG.53783.2	-	75061201,75066756,75068995,75069894,75077158,75077489,75083086,75088007	75061567,75066840,75069813,75070042,75077207,75077580,75083150,75088135	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	72111432	72111441	72111440	-	High_confidence	7	7	15	0.429106	3.139572	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72107158	72111443	ANAPC15|ENST00000543050.5	-	72107158,72110087,72110543,72111156,72111411	72107605,72110225,72110603,72111286,72111443	0.733333
right_lobe_of_liver_female_adult_53_years	chr14	88024527	88024593	88024549	+	High_confidence	251	251	743	21.255070	7.756706	chr14	88024340	88025306	LTR|ERVK|LTR5B	+	chr14	88024613	88107755	STRG.75553.1	+	88024613,88044614,88079103,88084036,88090022	88037439,88044848,88079368,88087037,88107755	0.935397
right_lobe_of_liver_female_adult_53_years	chr17	50547686	50547712	50547700	+	High_confidence	2	2	8	0.228857	2.807355	chr17	50547441	50547788	LINE|L2|L2c	+	chr17	50547998	50555852	SPATA20|ENST00000511937.5	+	50547998,50548282,50548553,50548809,50549042,50549285,50549984,50550207,50550535,50550707,50550997,50551510,50551968,50554250,50555231,50555491	50548161,50548453,50548618,50548964,50549186,50549487,50550115,50550312,50550610,50550917,50551222,50551679,50552180,50554450,50555312,50555852	0.875000
right_lobe_of_liver_female_adult_53_years	chr22	26484061	26484065	26484064	+	High_confidence	4	4	8	0.228857	2.521641	chr22	26484072	26484276	SINE|MIR|MIRb	+	chr22	26483883	26491938	SRRD|NM_001013694.2	+	26483883,26486022,26488028,26488389,26490043,26491024,26491462	26484099,26486063,26488288,26488488,26490198,26491070,26491938	0.750000
right_lobe_of_liver_female_adult_53_years	chr17	4736349	4736391	4736361	-	High_confidence	11	14	35	1.001248	3.985968	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	1.000000
right_lobe_of_liver_female_adult_53_years	chr4	118827156	118827173	118827163	-	RAMPAGE_only	8	8	17	0.486321	3.577820	chr4	118826910	118827231	LINE|L2|L2c	-	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.529412
right_lobe_of_liver_female_adult_53_years	chr7	99671246	99671532	99671425	-	RAMPAGE_only	33	34	608	17.393113	6.048615	chr7	99671239	99671795	LINE|L1|L1MD	+	chr7	99648197	99679953	STRG.44969.11	-	99648197,99650072,99652552,99660498,99662815,99663967,99665165,99666600,99666951,99674532,99676114,99679825	99648400,99650232,99652779,99660659,99662882,99664095,99665314,99666689,99672679,99674585,99676208,99679953	0.998355
right_lobe_of_liver_female_adult_53_years	chr15	75626279	75626305	75626304	-	High_confidence	35	36	52	1.487569	4.416384	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
right_lobe_of_liver_female_adult_53_years	chr12	113186207	113186208	113186207	+	High_confidence	16	16	19	0.543535	3.892407	chr12	113186126	113186312	SINE|MIR|MIRb	+	chr12	113185541	113192361	RITA1|ENST00000552495.1	+	113185541,113186682,113191309	113186021,113187048,113192361	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	11451698	11451699	11451698	-	High_confidence	63	63	74	2.116925	5.320181	chr11	11451697	11451900	SINE|MIR|MIRb	-	chr11	11371531	11451673	STRG.61349.2	-	11371531,11377181,11379080,11432620,11448743,11451474	11372629,11377379,11379264,11432787,11448936,11451673	0.905405
right_lobe_of_liver_female_adult_53_years	chr4	8436023	8436026	8436025	-	RAMPAGE_only	5	9	14	0.400499	3.546594	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.857143
right_lobe_of_liver_female_adult_53_years	chr13	38354245	38354263	38354262	+	RAMPAGE_only	12	12	19	0.543535	3.530493	chr13	38354306	38354393	LINE|L1|L1M5	+	chr13	38349880	38363619	UFM1|ENST00000239878.8	+	38349880,38349998,38354238,38358092,38359300,38360710	38349921,38350055,38354296,38358132,38359333,38363619	0.947368
right_lobe_of_liver_female_adult_53_years	chr8	99891953	99892057	99892056	-	RAMPAGE_only	193	193	462	13.216477	5.080210	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.982684
right_lobe_of_liver_female_adult_53_years	chr12	27579302	27579306	27579305	+	RAMPAGE_only	7	7	16	0.457713	3.640224	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.625000
right_lobe_of_liver_female_adult_53_years	chr8	28084019	28084108	28084072	-	High_confidence	20	20	137	3.919172	5.995130	chr8	28084027	28084332	SINE|Alu|AluSx1	+	chr8	28021963	28083871	NUGGC|ENST00000413272.6	-	28021963,28026961,28029265,28030309,28031242,28033539,28041050,28045526,28047506,28055964,28058257,28060425,28064521,28067513,28068215,28069543,28070251,28074367,28083774	28023462,28027052,28029402,28030418,28031381,28033697,28041215,28045660,28047612,28056054,28058276,28060601,28064731,28067744,28068438,28069652,28070356,28074456,28083871	0.627737
right_lobe_of_liver_female_adult_53_years	chr11	18239141	18239159	18239141	-	RAMPAGE_only	4	4	8	0.228857	3.000000	chr11	18239136	18239336	LINE|L1|L1M5	-	chr11	18238232	18248674	SAA2|NM_001127380.2	-	18238232,18245909,18247920,18248602	18239969,18246048,18248015,18248674	0.875000
right_lobe_of_liver_female_adult_53_years	chr11	57425853	57425899	57425853	-	High_confidence	3	3	13	0.371892	3.392747	chr11	57425746	57425858	LINE|CR1|L3	-	chr11	57417879	57425856	SLC43A3|ENST00000529113.5	-	57417879,57420971,57421296,57423981,57425540	57417887,57421064,57421373,57424028,57425856	0.846154
right_lobe_of_liver_female_adult_53_years	chr6	38687135	38687139	38687135	-	RAMPAGE_only	5	5	10	0.286071	2.921928	chr6	38687125	38687432	LTR|ERVL|LTR16C	+	chr6	38675942	38683215	GLO1|ENST00000470973.1	-	38675942,38682011,38682807	38677383,38682101,38683215	0.800000
right_lobe_of_liver_female_adult_53_years	chr17	2975660	2975667	2975660	+	RAMPAGE_only	3	3	9	0.257464	2.500000	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.888889
right_lobe_of_liver_female_adult_53_years	chr4	185620108	185620133	185620132	-	RAMPAGE_only	3	3	7	0.200250	2.807355	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	1.000000
right_lobe_of_liver_female_adult_53_years	chr2	61482956	61482989	61482956	-	RAMPAGE_only	2	2	14	0.400499	3.521641	chr2	61482597	61482921	SINE|Alu|AluSx3	-	chr2	61477934	61494743	XPO1|ENST00000481073.5	-	61477934,61481184,61482379,61482956,61483936,61485767,61488164,61488587,61490641,61492034,61492324,61492566,61492914,61493893	61478966,61481281,61482539,61483091,61484105,61485962,61488271,61488771,61490776,61492198,61492481,61492748,61493053,61494743	1.000000
right_lobe_of_liver_female_adult_53_years	chr2	46000851	46000885	46000884	+	High_confidence	5	5	10	0.286071	3.169925	chr2	46000000	46000990	LINE|L1|L1MCa	-	chr2	46000901	46010964	PRKCE|ENST00000394874.1	+	46000901,46001403,46004541,46007461,46010343,46010683	46001002,46001546,46004638,46007661,46010517,46010964	0.800000
right_lobe_of_liver_female_adult_53_years	chr4	73508597	73508649	73508648	+	High_confidence	8	8	27	0.772392	4.026987	chr4	73508567	73508887	SINE|Alu|AluJr4	-	chr4	73508802	73528533	LOC728040|NR_046377.1	+	73508802,73509674,73510202,73528412	73509252,73509725,73510343,73528533	0.592593
right_lobe_of_liver_female_adult_53_years	chr1	59515713	59515714	59515713	+	High_confidence	56	58	68	1.945282	5.610754	chr1	59515522	59515871	LTR|ERVL-MaLR|THE1A	+	chr1	59515638	59763317	STRG.2341.6	+	59515638,59554123,59607802,59625987,59638227,59660218,59667282,59674038,59757930,59762502	59515795,59554227,59607910,59626049,59638375,59660293,59667403,59674133,59757992,59763317	0.691176
right_lobe_of_liver_female_adult_53_years	chr2	112824328	112824353	112824334	-	High_confidence	44	45	166	4.748778	5.138916	chr2	112823914	112824338	LINE|L2|L2a	+	chr2	112817873	112824321	STRG.13383.1	-	112817873,112824260	112819440,112824321	0.945783
right_lobe_of_liver_female_adult_53_years	chrX	73837439	73837465	73837439	-	RAMPAGE_only	7	7	23	0.657963	2.832561	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.826087
right_lobe_of_liver_female_adult_53_years	chr12	111791819	111791862	111791819	+	High_confidence	17	18	55	1.573390	4.610335	chr12	111791747	111791914	SINE|Alu|AluJb	+	chr12	111792610	111809670	ALDH2|ENST00000549106.1	+	111792610,111798077,111803858,111809542	111792782,111798242,111803973,111809670	0.890909
right_lobe_of_liver_female_adult_53_years	chr19	5680226	5680257	5680226	-	High_confidence	3	3	16	0.457713	3.139572	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.875000
right_lobe_of_liver_female_adult_53_years	chr2	21071003	21071026	21071025	+	High_confidence	4	4	8	0.228857	2.750000	chr2	21071067	21071271	SINE|MIR|MIR	+	chr2	21070784	21096871	STRG.10367.2	+	21070784,21096120	21071131,21096871	0.750000
right_lobe_of_liver_female_adult_53_years	chr2	31368543	31368588	31368558	-	RAMPAGE_only	3	3	13	0.371892	3.022055	chr2	31368387	31368532	LINE|CR1|L3	-	chr2	31334320	31414715	XDH|ENST00000379416.3	-	31334320,31337640,31339488,31341328,31342182,31344683,31346768,31347521,31348267,31348898,31349685,31350031,31364157,31365456,31365975,31366869,31367960,31368540,31370354,31372227,31373872,31375379,31377052,31379866,31381632,31383000,31383754,31386413,31387810,31388226,31397667,31398572,31401219,31403047,31405906,31414624	31336008,31337817,31339677,31341394,31342297,31344736,31346843,31347650,31348363,31348980,31349831,31350223,31364244,31365544,31366109,31366994,31368057,31368660,31370478,31372397,31373956,31375554,31377237,31379976,31381726,31383152,31383847,31386555,31387897,31388295,31397729,31398699,31401328,31403144,31405964,31414715	0.923077
right_lobe_of_liver_female_adult_53_years	chr5	34502202	34502217	34502216	+	High_confidence	5	5	10	0.286071	2.947703	chr5	34501877	34502229	LTR|ERVL|LTR33	+	chr5	34502192	34503500	STRG.29895.1	+	34502192,34502936	34502466,34503500	0.800000
right_lobe_of_liver_female_adult_53_years	chr15	100345506	100345536	100345535	-	RAMPAGE_only	21	37	89	2.546031	5.499165	chr15	100345381	100345814	LTR|ERVL-MaLR|MLT1J	+	chr15	100344456	100349388	SPATA41|ENST00000558307.1	-	100344456,100349307	100345627,100349388	0.674157
right_lobe_of_liver_female_adult_53_years	chr4	76454248	76454302	76454301	+	RAMPAGE_only	115	136	422	12.072193	7.827950	chr4	76454050	76454343	SINE|Alu|AluSq	-	chr4	76435099	76783253	SHROOM3|ENST00000296043.6	+	76435099,76555608,76710155,76730803,76738760,76749016,76754310,76756448,76759544,76770625,76778808	76436220,76555763,76710287,76730935,76741926,76749090,76755192,76756937,76759695,76770898,76783253	0.547393
right_lobe_of_liver_female_adult_53_years	chr10	121974536	121974557	121974536	-	High_confidence	4	4	18	0.514928	4.169925	chr10	121974357	121974506	DNA|hAT-Charlie|MER5A	-	chr10	121967645	121974754	NSMCE4A|ENST00000472431.1	-	121967645,121970938,121974003,121974305	121967806,121971069,121974081,121974754	0.722222
right_lobe_of_liver_female_adult_53_years	chr12	12635947	12635949	12635948	+	RAMPAGE_only	6	10	15	0.429106	3.378783	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	0.933333
right_lobe_of_liver_female_adult_53_years	chr2	209495100	209495142	209495141	+	High_confidence	9	9	21	0.600749	4.297079	chr2	209495053	209495629	LINE|L1|L1P3	+	chr2	209495351	209710161	STRG.17166.2	+	209495351,209507591,209580035,209625052,209653141,209678571,209680749,209700276,209705579,209709913	209495629,209507641,209580100,209625129,209653432,209678685,209680827,209700338,209705727,209710161	0.809524
right_lobe_of_liver_female_adult_53_years	chr8	29018768	29018772	29018768	+	RAMPAGE_only	3	3	7	0.200250	2.584963	chr8	29018661	29018776	LINE|CR1|L3	+	chr8	29046299	29050654	HMBOX1|ENST00000517386.1	+	29046299,29047357,29048953,29050201	29046416,29047453,29049048,29050654	0.714286
right_lobe_of_liver_female_adult_53_years	chr7	99657770	99658395	99657770	-	RAMPAGE_only	16	16	454	12.987620	6.628042	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648197	99660602	STRG.44969.25	-	99648197,99650072,99652552	99648400,99650232,99660602	0.995595
right_lobe_of_liver_female_adult_53_years	chr12	31447611	31447628	31447611	-	RAMPAGE_only	3	3	6	0.171643	2.584963	chr12	31447606	31447734	LINE|L1|X9_LINE	+	chr12	31382222	31590442	DENND5B|NM_001308339.1	-	31382222,31389323,31392266,31392613,31398174,31399653,31402497,31409262,31413435,31415366,31423596,31424534,31426292,31433154,31442774,31447537,31451939,31460193,31479588,31495809,31499605,31500392,31590385	31387786,31389498,31392393,31392696,31398362,31399772,31402643,31409384,31413564,31415448,31423675,31424687,31426424,31433248,31442925,31447769,31452476,31460381,31480255,31495919,31499671,31500652,31590442	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	61488885	61488905	61488885	+	High_confidence	9	10	26	0.743784	3.939471	chr11	61488729	61489022	LINE|L2|L2b	-	chr11	61488841	61490931	PPP1R32|ENST00000366212.8	+	61488841,61489781,61490500,61490813	61488962,61489946,61490584,61490931	0.961538
right_lobe_of_liver_female_adult_53_years	chr2	227339331	227339356	227339331	+	High_confidence	10	10	23	0.657963	4.142915	chr2	227339254	227339802	LTR|ERVL-MaLR|MLT1G3	-	chr2	227340291	227357381	MFF|ENST00000456345.1	+	227340291,227347225,227355676,227356985	227340380,227347384,227355761,227357381	0.826087
right_lobe_of_liver_female_adult_53_years	chr6	131844453	131844473	131844472	+	High_confidence	195	209	713	20.396858	6.725058	chr6	131844197	131845043	DNA|TcMar-Tigger|Tigger6a	+	chr6	131844473	131893825	STRG.39526.4	+	131844473,131847775,131849989,131851141,131852174,131854925,131858667,131860386,131861594,131864505,131864865,131868017,131869357,131872069,131872922,131874267,131875775,131876991,131878541,131879879,131882344,131883693,131884930,131886561,131890340	131844980,131847848,131850106,131851267,131852235,131855023,131858747,131860506,131861704,131864571,131864938,131868126,131869489,131872101,131873050,131874337,131875863,131877161,131878593,131880034,131882474,131883774,131885063,131886724,131893825	0.981767
right_lobe_of_liver_female_adult_53_years	chr9	114324527	114324528	114324527	+	High_confidence	4	4	7	0.200250	2.807355	chr9	114324520	114324664	SINE|MIR|MIRb	+	chr9	114323765	114325251	ORM1|ENST00000477456.1	+	114323765,114324017,114324789,114325048	114323805,114324088,114324897,114325251	0.571429
right_lobe_of_liver_female_adult_53_years	chr12	27751966	27752000	27751997	+	RAMPAGE_only	7	7	23	0.657963	3.584012	chr12	27751956	27752215	SINE|Alu|AluJr	+	chr12	27710846	27755537	MRPS35|ENST00000542791.1	+	27710846,27755180	27710955,27755537	0.782609
right_lobe_of_liver_female_adult_53_years	chr1	159991576	159991602	159991593	-	RAMPAGE_only	29	33	55	1.573390	5.185353	chr1	159991512	159991913	LTR|ERV1|MER57B2	+	chr1	159951491	159954254	SLAMF9|NM_033438.3	-	159951491,159952261,159953308,159954091	159951866,159952534,159953653,159954254	0.563636
right_lobe_of_liver_female_adult_53_years	chrX	73994875	73994876	73994875	+	RAMPAGE_only	18	20	22	0.629356	3.970573	chrX	73994826	73995038	SINE|Alu|AluSp	-	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.909091
right_lobe_of_liver_female_adult_53_years	chr9	133602411	133602423	133602422	-	RAMPAGE_only	5	5	24	0.686570	4.095795	chr9	133602245	133602376	SINE|MIR|MIR	-	chr9	133577351	133609374	STRG.56209.1	-	133577351,133579595,133580130,133609076	133579429,133579829,133580246,133609374	0.791667
right_lobe_of_liver_female_adult_53_years	chr7	95412689	95412709	95412689	-	RAMPAGE_only	4	4	9	0.257464	2.750000	chr7	95412677	95412759	LINE|L1|HAL1	+	chr7	95411650	95434951	PON2|ENST00000491069.5	-	95411650,95412311,95416171,95424514,95434877	95411779,95412477,95416297,95424585,95434951	0.666667
right_lobe_of_liver_female_adult_53_years	chr1	227142950	227142957	227142956	-	RAMPAGE_only	5	6	11	0.314678	3.095795	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.727273
right_lobe_of_liver_female_adult_53_years	chr4	170226586	170226588	170226587	+	High_confidence	138	165	231	6.608239	6.432057	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.761905
right_lobe_of_liver_female_adult_53_years	chr5	32204332	32204393	32204392	+	High_confidence	7	7	36	1.029855	4.490297	chr5	32203734	32204502	LTR|ERVL|MER54A	+	chr5	32204346	32204675	STRG.29866.1	+	32204346	32204675	0.583333
right_lobe_of_liver_female_adult_53_years	chr16	72021308	72021309	72021308	+	RAMPAGE_only	13	13	17	0.486321	4.087463	chr16	72021335	72021595	LINE|L2|L2b	+	chr16	72015622	72024512	DHODH|ENST00000571392.1	+	72015622,72023164,72023479,72024144	72017106,72023323,72023633,72024512	1.000000
right_lobe_of_liver_female_adult_53_years	chr1	230856036	230856047	230856036	-	High_confidence	4	4	14	0.400499	3.664498	chr1	230855985	230856233	SINE|MIR|MIRb	+	chr1	230837118	230856036	C1orf198|NM_001136495.1	-	230837118,230843353,230855667,230855877	230839908,230843896,230855718,230856036	0.928571
right_lobe_of_liver_female_adult_53_years	chr19	49086520	49086547	49086520	+	High_confidence	13	14	31	0.886820	4.696132	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.612903
right_lobe_of_liver_female_adult_53_years	chr17	4143196	4143244	4143199	+	High_confidence	88	93	210	6.007490	6.272711	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	1.000000
right_lobe_of_liver_female_adult_53_years	chr16	75119410	75119411	75119410	+	High_confidence	33	34	46	1.315926	5.016028	chr16	75119199	75119791	LTR|ERV1|MER4-int	+	chr16	75119419	75128493	STRG.81651.1	+	75119419,75126175,75127830	75119582,75126312,75128493	0.586957
right_lobe_of_liver_female_adult_53_years	chr13	99496741	99496756	99496741	-	High_confidence	5	5	12	0.343285	3.022055	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.750000
right_lobe_of_liver_female_adult_53_years	chr8	75324331	75324332	75324331	-	High_confidence	4	4	7	0.200250	2.584963	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.571429
right_lobe_of_liver_female_adult_53_years	chr10	27121399	27121426	27121399	-	RAMPAGE_only	1	1	8	0.228857	2.807355	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	0.875000
right_lobe_of_liver_female_adult_53_years	chr1	52914041	52914057	52914056	-	RAMPAGE_only	14	15	24	0.686570	4.501629	chr1	52913984	52914299	LINE|L2|L2b	-	chr1	52913419	52921785	ECHDC2|ENST00000542552.1	-	52913419,52917543,52921552	52914095,52917615,52921785	0.875000
right_lobe_of_liver_female_adult_53_years	chr12	124014283	124014314	124014283	+	RAMPAGE_only	11	12	23	0.657963	4.142915	chr12	124013958	124014362	LINE|L2|L2a	-	chr12	123973294	124015422	ZNF664|ENST00000337815.8	+	123973294,123973885,123988042,124011380,124011545	123973352,123974020,123988138,124011441,124015422	1.000000
right_lobe_of_liver_female_adult_53_years	chr16	15577122	15577123	15577122	+	High_confidence	6	6	9	0.257464	2.750000	chr16	15576751	15577391	LTR|ERV1|LTR9D	-	chr16	15577133	15587357	C16orf45|ENST00000565913.1	+	15577133,15581216,15583155,15586716	15577228,15581331,15583238,15587357	0.777778
right_lobe_of_liver_female_adult_53_years	chr1	1655444	1655449	1655444	-	RAMPAGE_only	6	8	11	0.314678	3.095795	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.636364
right_lobe_of_liver_female_adult_53_years	chr7	99660196	99660202	99660196	-	High_confidence	4	4	9	0.257464	2.725481	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648197	99660602	STRG.44969.25	-	99648197,99650072,99652552	99648400,99650232,99660602	1.000000
right_lobe_of_liver_female_adult_53_years	chr9	95143586	95143591	95143586	-	High_confidence	2	2	6	0.171643	2.584963	chr9	95142820	95143604	LTR|ERVL|MER21C	-	chr9	95099053	95144140	STRG.54650.3	-	95099053,95107065,95111462,95114628,95117314,95125085,95126528,95135345,95143523	95101850,95107269,95111637,95114710,95117390,95125185,95126581,95135502,95144140	1.000000
right_lobe_of_liver_female_adult_53_years	chr2	230520765	230520788	230520765	-	High_confidence	23	23	39	1.115677	4.543852	chr2	230520655	230521096	LTR|ERV1|LTR44	-	chr2	230519101	230520836	STRG.17858.1	-	230519101	230520836	0.846154
right_lobe_of_liver_female_adult_53_years	chr7	10973335	10973336	10973335	+	High_confidence	4	4	6	0.171643	2.584963	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973334	11054306	STRG.41413.6	+	10973334,10974013,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611	10973634,10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11054306	0.833333
right_lobe_of_liver_female_adult_53_years	chr14	77710859	77710889	77710888	+	High_confidence	5	5	13	0.371892	3.026987	chr14	77710914	77711213	LINE|L1|L1MA1	+	chr14	77710643	77717584	SLIRP|ENST00000556956.1	+	77710643,77715771,77717495	77710896,77715879,77717584	0.923077
right_lobe_of_liver_female_adult_53_years	chr3	52615426	52615439	52615426	-	High_confidence	9	9	19	0.543535	3.932138	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.894737
right_lobe_of_liver_female_adult_53_years	chr12	102853137	102853169	102853168	-	High_confidence	5	9	20	0.572142	3.184184	chr12	102853047	102853282	SINE|MIR|MIRb	+	chr12	102840512	102853415	PAH|ENST00000549247.6	-	102840512,102843645,102844335,102846894,102851686,102852814	102840515,102843779,102844431,102846951,102851756,102853415	0.900000
right_lobe_of_liver_female_adult_53_years	chr19	47871288	47871340	47871300	-	RAMPAGE_only	4	4	26	0.743784	3.777363	chr19	47871158	47871289	SINE|Alu|AluYg6	-	chr19	47870465	47886397	SULT2A1|NM_003167.3	-	47870465,47874656,47879035,47882083,47883576,47886121	47871567,47874834,47879130,47882210,47883785,47886397	0.961538
right_lobe_of_liver_female_adult_53_years	chr5	180909572	180909573	180909572	+	High_confidence	10	10	11	0.314678	3.321928	chr5	180909597	180909731	SINE|Alu|FLAM_C	+	chr5	180909572	180948353	BTNL8|ENST00000514448.5	+	180909572,180911338,180947511	180909697,180911614,180948353	0.636364
right_lobe_of_liver_female_adult_53_years	chr4	152850647	152850656	152850655	+	High_confidence	5	5	9	0.257464	3.169925	chr4	152850580	152850736	DNA|hAT-Charlie|MER5A1	+	chr4	152850647	152881111	ARFIP1|ENST00000513361.1	+	152850647,152863605,152870752,152872451,152880962	152850727,152863714,152870848,152872564,152881111	0.555556
right_lobe_of_liver_female_adult_53_years	chr15	45396216	45396259	45396216	-	RAMPAGE_only	3	4	12	0.343285	3.459432	chr15	45395920	45396173	LINE|L2|L2c	-	chr15	45369328	45402218	GATM|ENST00000561148.5	-	45369328,45376600,45396921,45399545,45401938	45369521,45376819,45397082,45399595,45402218	0.666667
right_lobe_of_liver_female_adult_53_years	chr1	95117499	95117572	95117527	+	High_confidence	18	18	59	1.687819	5.469685	chr1	95117576	95117935	LINE|L1|L1M4b	+	chr1	95117438	95173878	TMEM56|ENST00000456991.5	+	95117438,95121054,95143890,95148701,95150207,95151324,95173815	95117827,95121184,95144056,95148791,95150266,95151419,95173878	0.813559
right_lobe_of_liver_female_adult_53_years	chr7	99410077	99410113	99410077	+	High_confidence	2	2	10	0.286071	2.721928	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.500000
right_lobe_of_liver_female_adult_53_years	chr3	187041601	187041668	187041605	+	RAMPAGE_only	9	13	69	1.973889	5.032966	chr3	187041603	187041758	SINE|MIR|MIRb	+	chr3	187025482	187042977	ST6GAL1|ENST00000446170.1	+	187025482,187038394,187038741,187042653	187025517,187038491,187038873,187042977	0.579710
right_lobe_of_liver_female_adult_53_years	chr2	240868458	240868459	240868458	+	High_confidence	16	16	20	0.572142	4.037401	chr2	240868334	240868538	DNA|hAT-Charlie|MER58A	+	chr2	240868478	240879120	AGXT|ENST00000307503.3	+	240868478,240869169,240870643,240871348,240872978,240873977,240875108,240875934,240877536,240878021,240878713	240869030,240869362,240870708,240871449,240873049,240874062,240875204,240876004,240877632,240878150,240879120	0.950000
right_lobe_of_liver_female_adult_53_years	chr3	136252315	136252321	136252320	+	RAMPAGE_only	8	8	18	0.514928	4.169925	chr3	136252260	136252524	SINE|Alu|AluSx	-	chr3	136251242	136283914	PCCB|ENST00000462542.5	+	136251242,136255855,136256554,136260478,136261951,136283836	136251292,136255975,136256623,136260535,136262065,136283914	0.722222
right_lobe_of_liver_female_adult_53_years	chr4	76312068	76312109	76312107	-	High_confidence	8	19	38	1.087070	4.614859	chr4	76311899	76312277	LTR|ERVL-MaLR|MLT1J2	-	chr4	76311530	76312167	STRG.26678.2	-	76311530	76312167	0.500000
right_lobe_of_liver_female_adult_53_years	chr13	40880934	40880935	40880934	-	RAMPAGE_only	17	21	21	0.600749	4.070656	chr13	40880825	40881282	LTR|ERV1|LTR2	-	chr13	40873168	40878513	STRG.71079.1	-	40873168	40878513	0.714286
right_lobe_of_liver_female_adult_53_years	chr5	43583526	43583551	43583526	-	RAMPAGE_only	4	4	16	0.457713	3.640224	chr5	43583213	43583828	LTR|ERV1|MER39B	-	chr5	43571593	43603104	NNT-AS1|ENST00000513560.6	-	43571593,43583466,43602777	43575935,43583566,43603104	0.937500
right_lobe_of_liver_female_adult_53_years	chr18	7946875	7946898	7946878	+	High_confidence	32	33	159	4.548528	5.521747	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.880503
right_lobe_of_liver_female_adult_53_years	chr1	20154494	20154495	20154494	+	High_confidence	18	18	24	0.686570	4.055958	chr1	20154321	20156816	LTR|ERV1|HERVE-int	+	chr1	20154337	20160568	Z98257.1|ENST00000417884.1	+	20154337,20159611	20154463,20160568	0.625000
right_lobe_of_liver_female_adult_53_years	chr17	39494625	39494629	39494625	+	RAMPAGE_only	3	3	7	0.200250	2.807355	chr17	39494618	39494687	DNA|Merlin|Merlin1_HS	-	chr17	39462038	39535146	CDK12|ENST00000447079.4	+	39462038,39470878,39490556,39492750,39494523,39501249,39509704,39511528,39515730,39517439,39519955,39524673,39525863,39530603	39463117,39471763,39490733,39492890,39494694,39501439,39509761,39511630,39515808,39517556,39520087,39524885,39526316,39535146	1.000000
right_lobe_of_liver_female_adult_53_years	chr16	72014395	72014451	72014418	+	High_confidence	593	593	2079	59.474147	7.913646	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72023278	STRG.82098.8	+	72014418,72017023,72021123,72023164	72014672,72017106,72022475,72023278	0.764791
right_lobe_of_liver_female_adult_53_years	chr4	69519849	69519852	69519851	-	RAMPAGE_only	8	11	14	0.400499	3.392747	chr4	69519504	69519916	LTR|ERV1|MER4A	+	chr4	69480164	69526014	UGT2B4|NM_001297616.1	-	69480164,69485207,69486608,69489438,69493692,69495140,69525686	69480910,69485427,69486696,69489570,69493841,69495410,69526014	0.857143
right_lobe_of_liver_female_adult_53_years	chr2	206161376	206161466	206161465	+	High_confidence	43	47	209	5.978883	5.933842	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	0.923445
right_lobe_of_liver_female_adult_53_years	chr5	67795186	67795187	67795186	+	RAMPAGE_only	6	6	6	0.171643	2.584963	chr5	67794475	67796015	LTR|ERVL-MaLR|MLT-int	+	chr5	67793217	67805235	AC112206.2|ENST00000504068.1	+	67793217,67797628,67804645	67793292,67797756,67805235	0.500000
right_lobe_of_liver_female_adult_53_years	chr16	82056441	82056449	82056441	+	High_confidence	81	89	199	5.692812	6.313398	chr16	82056434	82056642	LINE|L1|L1ME3A	+	chr16	82056452	82098341	HSD17B2|ENST00000568090.5	+	82056452,82068169,82070941,82090901,82098074	82056513,82068382,82071127,82091039,82098341	0.748744
right_lobe_of_liver_female_adult_53_years	chr3	42873225	42873446	42873225	-	RAMPAGE_only	103	113	289	8.267450	5.530296	chr3	42873100	42873361	SINE|Alu|AluSg	+	chr3	42872191	42876141	CYP8B1|NM_004391.2	-	42872191	42876141	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	102641217	102641218	102641217	+	High_confidence	9	10	14	0.400499	3.026987	chr11	102641151	102641363	LINE|L2|L2	-	chr11	102641100	102683913	STRG.64667.1	+	102641100,102677702,102681239,102681821,102683324	102641335,102677784,102681374,102681888,102683913	0.928571
right_lobe_of_liver_female_adult_53_years	chr3	194247637	194247646	194247645	+	High_confidence	87	91	213	6.093311	6.251006	chr3	194247526	194247735	SINE|MIR|MIR	-	chr3	194247647	194257772	LINC02037|ENST00000455821.1	+	194247647,194249595,194255230,194257184	194247821,194249902,194255356,194257772	0.737089
right_lobe_of_liver_female_adult_53_years	chr1	166850257	166850286	166850285	+	RAMPAGE_only	3	3	12	0.343285	3.277613	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.916667
right_lobe_of_liver_female_adult_53_years	chr8	29148577	29148586	29148577	-	RAMPAGE_only	5	6	9	0.257464	2.500000	chr8	29148400	29148564	SINE|Alu|FAM	-	chr8	29067278	29150195	STRG.48208.2	-	29067278,29071619,29092744,29099132,29108138,29109433,29109917,29113462,29116830,29118867,29122590,29123365,29124023,29126481,29127121,29130532,29132307,29134039,29140062,29140467,29142156,29146377,29147391,29148576	29070766,29072316,29092878,29099241,29108192,29109511,29110070,29113555,29117007,29118992,29122646,29123492,29124123,29126511,29127268,29130665,29132465,29134210,29140191,29140617,29142303,29146540,29147602,29150195	0.888889
right_lobe_of_liver_female_adult_53_years	chr9	129489220	129489221	129489220	+	High_confidence	4	4	7	0.200250	2.521641	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	1.000000
right_lobe_of_liver_female_adult_53_years	chr17	1744331	1744340	1744339	+	RAMPAGE_only	7	7	20	0.572142	3.616349	chr17	1744211	1744513	SINE|Alu|AluSp	+	chr17	1743025	1755268	SERPINF2|ENST00000382061.4	+	1743025,1744991,1745174,1745332,1745707,1747018,1747308,1748597,1752585,1754121	1743076,1745058,1745213,1745395,1745909,1747162,1747512,1748740,1752790,1755268	0.800000
right_lobe_of_liver_female_adult_53_years	chr7	30594431	30594432	30594431	+	High_confidence	6	6	9	0.257464	3.169925	chr7	30594385	30594501	SINE|MIR|MIR3	+	chr7	30594680	30634033	GARS|ENST00000389266.7	+	30594680,30598795,30599946,30601058,30603033,30603495,30609584,30612095,30615895,30617113,30621392,30622316,30626233,30628559,30631447,30632246,30633734	30595143,30598897,30600049,30601200,30603122,30603572,30609730,30612245,30616058,30617278,30621500,30622462,30626319,30628669,30631541,30632437,30634033	1.000000
right_lobe_of_liver_female_adult_53_years	chr12	98494068	98494069	98494068	-	RAMPAGE_only	7	7	10	0.286071	2.947703	chr12	98494008	98494184	LTR|ERV1|LTR54	+	chr12	98486972	98491086	LINC02453|ENST00000549004.1	-	98486972,98490993	98487188,98491086	0.600000
right_lobe_of_liver_female_adult_53_years	chr2	218322141	218322155	218322141	-	RAMPAGE_only	2	2	11	0.314678	2.845351	chr2	218321932	218322221	SINE|Alu|AluSp	-	chr2	218279334	218292586	TMBIM1|ENST00000440422.5	-	218279334,218280025,218281939,218285762,218292465	218279353,218280126,218282181,218285938,218292586	0.727273
right_lobe_of_liver_female_adult_53_years	chr2	37929500	37929532	37929500	+	High_confidence	4	6	12	0.343285	3.584963	chr2	37929546	37929613	LINE|L1|HAL1M8	+	chr2	37928758	38017744	RMDN2|ENST00000406384.5	+	37928758,37929261,37974039,37975211,37981282,37989540,37991219,37997415,38003990,38004135,38017185	37928936,37929729,37974214,37975314,37981343,37989616,37991297,37997514,38004044,38004216,38017744	1.000000
right_lobe_of_liver_female_adult_53_years	chr1	33021386	33021456	33021455	-	RAMPAGE_only	55	61	125	3.575887	5.131125	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.992000
right_lobe_of_liver_female_adult_53_years	chr2	55268687	55268715	55268703	-	High_confidence	2	2	11	0.314678	3.321928	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	0.727273
right_lobe_of_liver_female_adult_53_years	chr9	95143627	95143657	95143627	-	High_confidence	5	6	13	0.371892	2.931209	chr9	95142820	95143604	LTR|ERVL|MER21C	-	chr9	95099053	95144140	STRG.54650.3	-	95099053,95107065,95111462,95114628,95117314,95125085,95126528,95135345,95143523	95101850,95107269,95111637,95114710,95117390,95125185,95126581,95135502,95144140	0.846154
right_lobe_of_liver_female_adult_53_years	chr14	35018997	35019055	35019054	+	RAMPAGE_only	4	4	29	0.829606	4.418157	chr14	35019103	35019274	LINE|CR1|L3	+	chr14	34983024	35029454	SRP54|ENST00000555557.5	+	34983024,34996676,35000935,35007282,35008626,35008773,35011508,35013345,35013801,35014743,35018691,35018965,35022909,35028087,35029060	34983215,34996787,35001020,35007387,35008693,35008831,35011659,35013494,35013902,35014830,35018765,35019074,35023080,35028183,35029454	0.931034
right_lobe_of_liver_female_adult_53_years	chr14	94386908	94386910	94386909	-	RAMPAGE_only	5	11	13	0.371892	3.584963	chr14	94386863	94387041	SINE|MIR|MIRb	-	chr14	94379112	94388589	SERPINA1|ENST00000402629.1	-	94379112,94380870,94382591,94388559	94379611,94381141,94383241,94388589	0.538462
right_lobe_of_liver_female_adult_53_years	chr14	64415653	64415727	64415683	+	RAMPAGE_only	6	6	36	1.029855	4.764858	chr14	64415628	64415688	DNA|hAT-Charlie|Charlie24	+	chr14	64419202	64426192	MTHFD1|ENST00000554057.5	+	64419202,64419813,64424803,64425729,64426018	64419250,64419925,64424931,64425827,64426192	0.833333
right_lobe_of_liver_female_adult_53_years	chr1	78223611	78223619	78223618	+	RAMPAGE_only	13	13	27	0.772392	4.458591	chr1	78223537	78223690	LINE|L2|L2b	-	chr1	78229598	78293890	MGC27382|ENST00000436742.5	+	78229598,78250183,78251493,78292479,78293078,78293590	78229729,78251010,78251877,78292631,78293277,78293890	0.555556
right_lobe_of_liver_female_adult_53_years	chr11	62600234	62600251	62600250	-	High_confidence	5	6	16	0.457713	3.006239	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.625000
right_lobe_of_liver_female_adult_53_years	chr9	127807664	127807686	127807664	+	High_confidence	3	3	8	0.228857	2.750000	chr9	127807695	127807819	SINE|MIR|MIR3	+	chr9	127807672	127813284	FPGS|ENST00000488506.5	+	127807672,127808233,127808557,127808799,127809683,127810030,127813194	127807688,127808311,127808705,127808889,127809834,127810106,127813284	1.000000
right_lobe_of_liver_female_adult_53_years	chr15	101434996	101434997	101434996	-	RAMPAGE_only	6	6	8	0.228857	2.807355	chr15	101434980	101435066	LINE|L2|L2b	-	chr15	101303928	101443663	PCSK6|ENST00000398185.6	-	101303928,101307212,101313375,101318318,101322519,101324849,101326376,101331650,101331851,101366195,101370334,101389463,101393211,101398403,101427891,101429986,101431319,101431989,101443555	101305355,101307325,101313505,101318422,101322607,101325046,101326479,101331689,101332031,101366332,101370523,101389564,101393424,101398576,101427980,101430063,101431463,101432100,101443663	0.500000
right_lobe_of_liver_female_adult_53_years	chr3	125497340	125497355	125497354	-	RAMPAGE_only	7	7	12	0.343285	3.277613	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	0.916667
right_lobe_of_liver_female_adult_53_years	chr4	169697625	169697626	169697625	+	RAMPAGE_only	13	13	16	0.457713	3.773557	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169662721	169723183	CLCN3|ENST00000504131.6	+	169662721,169663113,169663526,169680049,169687657,169689042,169690529,169692113,169695611,169697188,169703997,169706867,169713078,169719906	169662738,169663114,169663617,169680207,169687757,169689230,169690652,169692320,169695692,169697734,169704184,169707266,169713295,169723183	0.937500
right_lobe_of_liver_female_adult_53_years	chr12	102853236	102853244	102853236	-	High_confidence	7	7	13	0.371892	2.688722	chr12	102853047	102853282	SINE|MIR|MIRb	+	chr12	102840512	102853415	PAH|ENST00000549247.6	-	102840512,102843645,102844335,102846894,102851686,102852814	102840515,102843779,102844431,102846951,102851756,102853415	0.769231
right_lobe_of_liver_female_adult_53_years	chrX	73943913	73943942	73943941	+	High_confidence	7	7	15	0.429106	3.640224	chrX	73943785	73943965	SINE|MIR|MIRc	+	chrX	73944345	73944946	JPX|ENST00000453317.1	+	73944345,73944583	73944465,73944946	0.600000
right_lobe_of_liver_female_adult_53_years	chrX	31932452	31932495	31932494	-	RAMPAGE_only	25	27	97	2.774888	5.686557	chrX	31932463	31932747	SINE|Alu|AluSx1	+	chrX	31121672	31934079	STRG.95414.4	-	31121672,31134101,31146290,31147274,31169442,31172347,31173538,31178668,31180369,31182737,31203960,31206581,31209497,31223046,31260954,31323597,31348555,31444480,31478105,31478982,31496787,31507280,31627672,31657989,31679374,31729630,31773959,31819974,31836717,31875187,31929595,31932079,31934060	31121930,31134194,31146414,31147518,31169601,31172413,31173604,31178805,31180481,31182904,31204118,31206667,31209699,31223121,31261016,31323658,31348634,31444627,31478374,31479103,31496944,31507453,31627862,31658144,31679586,31729748,31774192,31820083,31836819,31875373,31929745,31932227,31934079	0.958763
right_lobe_of_liver_female_adult_53_years	chr12	10553364	10553365	10553364	+	High_confidence	8	8	9	0.257464	3.000000	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.777778
right_lobe_of_liver_female_adult_53_years	chrX	74000349	74000385	74000384	+	RAMPAGE_only	3	3	15	0.429106	3.373557	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	1.000000
right_lobe_of_liver_female_adult_53_years	chr17	51153837	51153859	51153837	+	High_confidence	7	8	15	0.429106	3.773557	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51153664	51161898	NME1|ENST00000013034.3	+	51153664,51154224,51155650,51159979,51161159,51161727	51153724,51154444,51155780,51160081,51161272,51161898	0.733333
right_lobe_of_liver_female_adult_53_years	chr3	51986165	51986173	51986165	+	High_confidence	13	13	39	1.115677	4.283381	chr3	51986054	51986192	SINE|MIR|MIR1_Amn	-	chr3	51986209	51987453	ACY1|ENST00000464587.2	+	51986209,51986414,51986604,51986987,51987146,51987308	51986331,51986504,51986661,51987061,51987196,51987453	0.846154
right_lobe_of_liver_female_adult_53_years	chr17	19030756	19030777	19030763	-	High_confidence	12	16	39	1.115677	4.352978	chr17	19030676	19030974	LINE|L2|L2a	+	chr17	19020804	19030888	STRG.82949.3	-	19020804,19024214,19030686	19022144,19024383,19030888	1.000000
right_lobe_of_liver_female_adult_53_years	chr20	31573373	31573414	31573380	+	High_confidence	11	11	30	0.858213	4.521641	chr20	31573375	31573489	SINE|MIR|MIR	+	chr20	31573230	31573939	STRG.90983.1	+	31573230	31573939	0.633333
right_lobe_of_liver_female_adult_53_years	chr9	101360799	101361375	101360821	-	RAMPAGE_only	121	123	932	26.661811	6.842548	chr9	101360372	101360790	LTR|ERVL-MaLR|MSTA	-	chr9	101360416	101383519	BAAT|NM_001127610.1	-	101360416,101368119,101370938,101383469	101363015,101368322,101371463,101383519	0.986052
right_lobe_of_liver_female_adult_53_years	chr7	154928492	154928504	154928503	+	High_confidence	30	30	47	1.344533	5.147191	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.893617
right_lobe_of_liver_female_adult_53_years	chrX	115647984	115648001	115647996	+	RAMPAGE_only	8	12	33	0.944034	4.452820	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.969697
right_lobe_of_liver_female_adult_53_years	chr1	77169261	77169313	77169312	-	High_confidence	4	4	22	0.629356	3.584184	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77092201	77169319	PIGK|ENST00000487906.5	-	77092201,77122274,77154448,77161294,77161593,77163845,77169259	77092490,77122359,77154621,77161405,77161711,77163942,77169319	0.500000
right_lobe_of_liver_female_adult_53_years	chr11	65430105	65430816	65430775	+	RAMPAGE_only	391	397	1935	55.354726	6.306180	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65423637	65445540	STRG.62879.5	+	65423637,65434274	65434178,65445540	0.999483
right_lobe_of_liver_female_adult_53_years	chr2	200588221	200588223	200588221	+	High_confidence	4	6	9	0.257464	2.500000	chr2	200587906	200588390	LINE|L2|L2a	-	chr2	200588173	200603297	AOX1|ENST00000454629.1	+	200588173,200593145,200595271,200597396,200599619,200602283,200603266	200588270,200593203,200595368,200597505,200599746,200602345,200603297	0.777778
right_lobe_of_liver_female_adult_53_years	chr8	9188203	9188279	9188203	+	High_confidence	7	7	52	1.487569	5.363713	chr8	9188163	9188460	LINE|L2|L2b	-	chr8	9188217	9202858	STRG.47490.1	+	9188217,9189347,9198923,9202498	9188250,9189597,9198991,9202858	0.711538
right_lobe_of_liver_female_adult_53_years	chr7	105677218	105677255	105677218	-	High_confidence	4	4	16	0.457713	3.452820	chr7	105677141	105677220	DNA|hAT-Charlie|MER5A	+	chr7	105665019	105677013	STRG.44862.5	-	105665019,105676937	105665288,105677013	1.000000
right_lobe_of_liver_female_adult_53_years	chr20	40008095	40008199	40008198	+	RAMPAGE_only	16	16	84	2.402996	4.133183	chr20	40008167	40008525	LTR|ERVL-MaLR|MLT1H2	+	chr20	40004483	40008529	LINC01370|ENST00000445606.1	+	40004483,40006262,40007902	40004491,40006358,40008529	0.940476
right_lobe_of_liver_female_adult_53_years	chr4	159317433	159317455	159317451	+	RAMPAGE_only	2	2	10	0.286071	2.947703	chr4	159317277	159317499	LINE|L2|L2a	-	chr4	159323251	159354045	STRG.28792.6	+	159323251,159329857,159330333,159331430,159331629,159331925,159332450,159338310,159339113,159341563,159342978,159343280,159344035,159345105,159346788,159350136,159351058,159352684,159353486	159323617,159330010,159330498,159331538,159331833,159332034,159332697,159338468,159339354,159341947,159343190,159343404,159344059,159345329,159346998,159350289,159351181,159352910,159354045	0.700000
right_lobe_of_liver_female_adult_53_years	chr9	89479889	89479890	89479889	-	High_confidence	21	21	21	0.600749	3.725651	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89362238	89479890	SEMA4D|ENST00000537934.5	-	89362238,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89418362,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89418437,89455953,89479890	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	58940285	58940347	58940311	+	High_confidence	29	33	187	5.349526	5.752568	chr11	58939816	58940740	LTR|ERV1|LOR1-int	+	chr11	58939483	58954821	GLYATL1|ENST00000532726.5	+	58939483,58943542,58947045,58947857,58954769	58939650,58943666,58947165,58947965,58954821	0.695187
right_lobe_of_liver_female_adult_53_years	chr7	99655323	99655512	99655323	-	RAMPAGE_only	39	40	168	4.805992	5.289395	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648197	99660602	STRG.44969.25	-	99648197,99650072,99652552	99648400,99650232,99660602	0.976190
right_lobe_of_liver_female_adult_53_years	chr19	51795150	51795187	51795157	+	High_confidence	5	5	28	0.800999	4.208966	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.964286
right_lobe_of_liver_female_adult_53_years	chr1	51305580	51305613	51305594	-	High_confidence	3	3	9	0.257464	2.750000	chr1	51305409	51305627	LINE|L2|L2b	+	chr1	51294457	51305593	TTC39A|ENST00000431927.5	-	51294457,51296078,51301571,51302356,51302505,51303083,51305080,51305526	51294511,51296170,51301733,51302416,51302573,51303192,51305146,51305593	0.888889
right_lobe_of_liver_female_adult_53_years	chr4	73422933	73422934	73422933	+	RAMPAGE_only	9	9	14	0.400499	3.521641	chr4	73422777	73423142	LINE|L1|L1PB1	+	chr4	73436162	73456174	AFP|ENST00000395792.6	+	73436162,73437159,73438173,73440601,73442295,73443346,73444992,73447461,73449334,73450035,73450614,73452400,73453764,73455235,73455630	73436347,73437211,73438306,73440813,73442428,73443444,73445122,73447676,73449467,73450133,73450753,73452624,73453897,73455290,73456174	0.857143
right_lobe_of_liver_female_adult_53_years	chr12	123390715	123390744	123390743	+	High_confidence	4	4	8	0.228857	3.000000	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.875000
right_lobe_of_liver_female_adult_53_years	chr4	154565206	154565231	154565230	+	RAMPAGE_only	63	63	176	5.034848	5.445458	chr4	154565068	154565287	SINE|MIR|MIR	-	chr4	154563010	154566522	FGB|ENST00000498375.2	+	154563010,154565185,154566488	154563132,154565999,154566522	0.920455
right_lobe_of_liver_female_adult_53_years	chr2	112824456	112824480	112824456	-	High_confidence	3	4	9	0.257464	2.500000	chr2	112824346	112824443	SINE|MIR|MIR3	-	chr2	112817873	112824321	STRG.13383.1	-	112817873,112824260	112819440,112824321	0.777778
right_lobe_of_liver_female_adult_53_years	chr7	103353930	103353957	103353930	+	High_confidence	9	12	40	1.144284	4.384184	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.925000
right_lobe_of_liver_female_adult_53_years	chr1	53090952	53090984	53090983	-	High_confidence	2	2	6	0.171643	2.584963	chr1	53090959	53091136	SINE|MIR|MIRb	-	chr1	53087183	53090982	SLC1A7|ENST00000488036.5	-	53087183,53088876,53089799	53088227,53088979,53090982	1.000000
right_lobe_of_liver_female_adult_53_years	chr10	72355140	72355146	72355145	-	High_confidence	5	5	14	0.400499	3.664498	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.928571
right_lobe_of_liver_female_adult_53_years	chr17	59892716	59892746	59892716	-	High_confidence	5	5	25	0.715177	4.142915	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.840000
right_lobe_of_liver_female_adult_53_years	chr20	24930628	24930660	24930639	+	High_confidence	37	37	137	3.919172	5.701700	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930642	24932960	STRG.90848.1	+	24930642,24931346	24930774,24932960	0.992701
right_lobe_of_liver_female_adult_53_years	chr3	139344537	139344555	139344547	+	High_confidence	429	430	892	25.517527	6.111990	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.968610
right_lobe_of_liver_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	14	15	18	0.514928	3.852169	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.777778
right_lobe_of_liver_female_adult_53_years	chr15	100345599	100345621	100345599	-	RAMPAGE_only	5	5	12	0.343285	3.418296	chr15	100345381	100345814	LTR|ERVL-MaLR|MLT1J	+	chr15	100344456	100349388	SPATA41|ENST00000558307.1	-	100344456,100349307	100345627,100349388	0.666667
right_lobe_of_liver_female_adult_53_years	chr2	177499649	177499715	177499694	+	RAMPAGE_only	13	14	46	1.315926	5.028890	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.782609
right_lobe_of_liver_female_adult_53_years	chr16	55790426	55790438	55790426	+	RAMPAGE_only	3	3	8	0.228857	2.750000	chr16	55790363	55790447	SINE|MIR|MIRb	+	chr16	55760641	55793960	CES1P1|ENST00000421606.6	+	55760641,55764696,55767364,55769961,55772368,55773403,55776790,55779701,55783598,55785612,55785956,55790544,55793407,55793776	55760693,55764904,55767509,55770095,55772522,55773511,55776895,55779740,55783739,55785693,55786104,55790676,55793480,55793960	1.000000
right_lobe_of_liver_female_adult_53_years	chr8	124619357	124619374	124619357	-	RAMPAGE_only	3	3	9	0.257464	2.750000	chr8	124619245	124619557	LINE|L2|L2c	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.555556
right_lobe_of_liver_female_adult_53_years	chr8	99893444	99893445	99893444	-	High_confidence	5	5	7	0.200250	2.584963	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.857143
right_lobe_of_liver_female_adult_53_years	chr6	8652256	8652275	8652274	+	High_confidence	3551	3593	8265	236.437627	6.030137	chr6	8652094	8652454	LTR|ERVL-MaLR|MLT1A	+	chr6	8652261	8653814	AL591485.1|ENST00000646741.1	+	8652261,8653544	8653136,8653814	0.962129
right_lobe_of_liver_female_adult_53_years	chr5	80211339	80211354	80211339	-	High_confidence	6	6	21	0.600749	3.787144	chr5	80211207	80211707	LTR|ERV1|LTR64	+	chr5	80177314	80210470	STRG.31675.3	-	80177314,80177885,80202885,80205225,80210320	80177397,80178064,80203053,80205360,80210470	0.714286
right_lobe_of_liver_female_adult_53_years	chr14	73610937	73610938	73610937	+	High_confidence	33	34	38	1.087070	4.932138	chr14	73610703	73611149	LTR|ERVL|MER70A	+	chr14	73610944	73619721	ACOT6|ENST00000554229.1	+	73610944,73611515,73616989,73619233	73611041,73611597,73617192,73619721	0.631579
right_lobe_of_liver_female_adult_53_years	chr4	128570477	128570500	128570499	-	High_confidence	2	2	7	0.200250	2.521641	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	62600173	62600187	62600186	-	High_confidence	4	4	8	0.228857	2.807355	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.875000
right_lobe_of_liver_female_adult_53_years	chr1	42844703	42844768	42844718	-	High_confidence	6	8	48	1.373140	4.926428	chr1	42844426	42844922	LTR|ERVL|MLT2B4	-	chr1	42841937	42844610	STRG.1566.1	-	42841937,42842774,42843403,42844510	42842013,42842916,42843450,42844610	0.625000
right_lobe_of_liver_female_adult_53_years	chr18	70339847	70339848	70339847	+	RAMPAGE_only	5	6	7	0.200250	2.521641	chr18	70339797	70340361	LTR|ERVL-MaLR|MLT1E2	-	chr18	70336447	70352119	LINC01909|ENST00000583247.1	+	70336447,70339799,70348971,70351978	70336504,70339881,70349114,70352119	1.000000
right_lobe_of_liver_female_adult_53_years	chr12	113334806	113334825	113334806	-	High_confidence	6	6	13	0.371892	2.968919	chr12	113334758	113334823	LINE|L2|L2b	-	chr12	113307799	113334833	SLC8B1|ENST00000553238.5	-	113307799,113310233,113315334,113316525,113316941,113318963,113320580,113320849,113321055,113321195,113332722,113334442	113307912,113310355,113315476,113316656,113317001,113319071,113320686,113320907,113321108,113321348,113332960,113334833	1.000000
right_lobe_of_liver_female_adult_53_years	chr5	134708866	134708883	134708882	+	RAMPAGE_only	7	10	16	0.457713	3.452820	chr5	134708923	134709232	SINE|Alu|AluJb	+	chr5	134648788	134727823	SEC24A|ENST00000398844.6	+	134648788,134661118,134666822,134671808,134674614,134675044,134676022,134679601,134682372,134686789,134688180,134692601,134693726,134697125,134697898,134703758,134705326,134708712,134715023,134718068,134720997,134723566,134724979	134649173,134661586,134666996,134671886,134674775,134675217,134676125,134679728,134682482,134686902,134688299,134692657,134693933,134697246,134698057,134703932,134705437,134708888,134715161,134718173,134721090,134723670,134727823	1.000000
right_lobe_of_liver_female_adult_53_years	chr17	70947790	70947813	70947798	-	RAMPAGE_only	16	16	75	2.145532	5.503174	chr17	70947384	70948869	LINE|L1|L1PB1	+	chr17	70778603	70779230	AC007423.1|ENST00000605009.1	-	70778603	70779230	0.626667
right_lobe_of_liver_female_adult_53_years	chr4	13698102	13698105	13698102	-	RAMPAGE_only	13	18	28	0.800999	4.532665	chr4	13697916	13698275	LTR|ERVL-MaLR|MLT1A0	-	chr4	13658416	13676029	STRG.25086.1	-	13658416,13675981	13660049,13676029	0.535714
right_lobe_of_liver_female_adult_53_years	chr10	95039591	95039592	95039591	-	High_confidence	8	8	9	0.257464	3.000000	chr10	95039538	95040063	LINE|L1|L1MC4	+	chr10	95037181	95039375	CYP2C8|ENST00000531714.1	-	95037181,95038896	95037309,95039375	0.888889
right_lobe_of_liver_female_adult_53_years	chr3	190615285	190615319	190615287	+	High_confidence	49	70	112	3.203994	5.634891	chr3	190615239	190615307	DNA|TcMar-Tigger|Tigger16b	+	chr3	190615307	190629732	IL1RAP|ENST00000412080.1	+	190615307,190620274,190623343,190627322,190629349	190615354,190620440,190623415,190627449,190629732	0.803571
right_lobe_of_liver_female_adult_53_years	chr12	80778361	80778362	80778361	+	High_confidence	5	5	8	0.228857	2.521641	chr12	80778022	80778485	LTR|ERVL-MaLR|MLT1H	+	chr12	80778372	80778919	STRG.68889.1	+	80778372	80778919	0.500000
right_lobe_of_liver_female_adult_53_years	chr7	134527596	134527597	134527596	+	High_confidence	10966	11178	12619	360.992912	7.315020	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.991838
right_lobe_of_liver_female_adult_53_years	chr1	28983863	28983900	28983895	+	RAMPAGE_only	11	17	68	1.945282	5.133198	chr1	28983513	28984367	LTR|ERV1|LTR1D	-	chr1	28987497	29072224	EPB41|ENST00000645111.1	+	28987497,28993329,29011864,29015691,29018223,29030399,29033092,29035825,29039253,29053103,29058588,29058810,29060421,29064981,29068732,29070363	28987905,28993542,29011907,29015767,29018442,29030487,29033245,29035923,29039426,29053312,29058645,29058852,29060484,29065158,29068768,29072224	0.867647
right_lobe_of_liver_female_adult_53_years	chr2	238300064	238300086	238300064	-	RAMPAGE_only	6	6	13	0.371892	3.022055	chr2	238299957	238300152	LTR|ERVL|ERV3-16A3_I-int	+	chr2	238275862	238290102	PER2|ENST00000431832.1	-	238275862,238277130,238277706,238289898	238275897,238277193,238277955,238290102	0.692308
right_lobe_of_liver_female_adult_53_years	chr13	57137708	57137728	57137727	-	High_confidence	6	6	28	0.800999	4.532665	chr13	57137620	57138111	LTR|ERV1|PrimLTR79	+	chr13	57136641	57137722	STRG.71676.1	-	57136641,57137670	57137180,57137722	0.642857
right_lobe_of_liver_female_adult_53_years	chr8	86369025	86369030	86369028	+	RAMPAGE_only	9	18	34	0.972641	4.829966	chr8	86368776	86369052	LINE|L2|L2c	+	chr8	86374040	86467476	WWP1|ENST00000265428.4	+	86374040,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	1.000000
right_lobe_of_liver_female_adult_53_years	chr17	2975600	2975622	2975608	+	RAMPAGE_only	2	2	7	0.200250	2.584963	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.714286
right_lobe_of_liver_female_adult_53_years	chr18	80148048	80148049	80148048	+	High_confidence	98	103	114	3.261209	6.056775	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.833333
right_lobe_of_liver_female_adult_53_years	chrX	30867150	30867157	30867156	-	RAMPAGE_only	8	10	20	0.572142	3.932138	chrX	30866257	30867266	LINE|L1|L1MC3	+	chrX	30834620	30871802	TAB3|ENST00000467136.5	-	30834620,30842965,30852777,30854115,30859486,30867114,30867464,30871698	30836835,30846644,30852938,30855562,30859678,30867218,30867549,30871802	0.950000
right_lobe_of_liver_female_adult_53_years	chr6	24383294	24383300	24383299	-	High_confidence	3	5	8	0.228857	2.807355	chr6	24383044	24383353	SINE|Alu|AluSp	+	chr6	24171754	24383292	DCDC2|NM_001195610.1	-	24171754,24178329,24205001,24278048,24288851,24290931,24301714,24301967,24353568,24357457,24383180	24174834,24178632,24205102,24278211,24288906,24291078,24301846,24302044,24353623,24357847,24383292	0.750000
right_lobe_of_liver_female_adult_53_years	chr4	73104320	73104369	73104320	+	High_confidence	21	21	148	4.233850	5.706528	chr4	73104255	73104343	LTR|ERVL|LTR79	+	chr4	73104357	73110833	STRG.27082.1	+	73104357,73110370	73104433,73110833	0.952703
right_lobe_of_liver_female_adult_53_years	chr12	121857338	121857424	121857342	-	High_confidence	43	49	472	13.502548	6.417070	chr12	121857068	121857295	SINE|Alu|AluSx1	-	chr12	121848998	121857583	HPD|ENST00000542159.2	-	121848998,121849686,121854702,121856323,121856582,121857327	121849076,121849938,121854792,121856406,121856603,121857583	0.838983
right_lobe_of_liver_female_adult_53_years	chr6	131635526	131635553	131635552	+	High_confidence	5	5	17	0.486321	3.500000	chr6	131635429	131635627	LTR|ERV1|PABL_B	+	chr6	131635547	131652860	STRG.39503.1	+	131635547,131637234,131641454,131650026,131652541,131652830	131635675,131637462,131641530,131650149,131652667,131652860	0.823529
right_lobe_of_liver_female_adult_53_years	chr4	69723048	69723074	69723073	-	RAMPAGE_only	8	10	21	0.600749	3.784942	chr4	69723014	69726028	LINE|L1|L1PA5	+	chr4	69721161	69760712	SULT1B1|ENST00000310613.7	-	69721161,69730500,69733412,69734137,69749720,69754669,69755069,69760458	69727200,69730681,69733507,69734264,69749818,69754798,69755261,69760712	1.000000
right_lobe_of_liver_female_adult_53_years	chr9	93448376	93448377	93448376	-	RAMPAGE_only	9	11	14	0.400499	3.378783	chr9	93448211	93448518	SINE|Alu|AluSz	+	chr9	93447267	93451114	FAM120AOS|ENST00000428152.1	-	93447267,93448368,93450478,93450944	93447697,93448489,93450587,93451114	0.642857
right_lobe_of_liver_female_adult_53_years	chr2	231047507	231047658	231047657	+	RAMPAGE_only	34	36	230	6.579631	4.165058	chr2	231047505	231047693	DNA|hAT-Charlie|MER20	+	chr2	231041106	231049719	C2orf72|ENST00000463834.1	+	231041106,231046881	231041409,231049719	1.000000
right_lobe_of_liver_female_adult_53_years	chr5	42517410	42517411	42517410	+	RAMPAGE_only	6	6	9	0.257464	3.169925	chr5	42517336	42517454	LINE|L2|L2a	+	chr5	42548042	42721878	GHR|ENST00000618088.4	+	42548042,42565863,42629037,42688889,42694916,42699823,42711206,42713428,42718051,42718452	42548151,42565944,42629103,42689019,42695089,42700002,42711372,42713519,42718121,42721878	0.777778
right_lobe_of_liver_female_adult_53_years	chr9	72363454	72363566	72363556	-	High_confidence	5	5	38	1.087070	4.350209	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.789474
right_lobe_of_liver_female_adult_53_years	chr4	182905207	182905208	182905207	-	RAMPAGE_only	8	8	10	0.286071	2.947703	chr4	182904639	182905323	LINE|L2|L2c	+	chr4	182876332	182917345	STRG.29193.2	-	182876332,182891402,182893030,182894488,182914922,182915460,182917287	182877760,182891477,182893127,182894605,182915058,182915575,182917345	0.900000
right_lobe_of_liver_female_adult_53_years	chrX	53220847	53220858	53220847	-	RAMPAGE_only	6	7	10	0.286071	3.169925	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	0.800000
right_lobe_of_liver_female_adult_53_years	chr3	33864004	33864082	33864065	+	RAMPAGE_only	10	11	41	1.172891	4.335207	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.951220
right_lobe_of_liver_female_adult_53_years	chr2	54539939	54539963	54539962	+	RAMPAGE_only	9	10	17	0.486321	3.577820	chr2	54539864	54540208	LTR|ERVL-MaLR|MLT1A0	+	chr2	54558393	54662308	SPTBN1|NM_178313.2	+	54558393,54599091,54612160,54616206,54617607,54618077,54621399,54622299,54623478,54624803,54625931,54628096,54628932,54629891,54630854,54632565,54637712,54642982,54644322,54645228,54645927,54646193,54647130,54648985,54649614,54653608,54655069,54655913,54657849,54659153,54659935	54558887,54599243,54612334,54616298,54617688,54618193,54621512,54622487,54623596,54624962,54626234,54628250,54629803,54630029,54631611,54632768,54637803,54643129,54644586,54645453,54646017,54646475,54647261,54649190,54649989,54653853,54655208,54655998,54658046,54659266,54662308	0.764706
right_lobe_of_liver_female_adult_53_years	chr10	30001063	30001087	30001070	-	High_confidence	128	187	406	11.614480	6.609785	chr10	30000830	30001339	LTR|ERVL|LTR40a	-	chr10	29991227	30001284	STRG.57190.1	-	29991227,30000959	29993264,30001284	0.923645
right_lobe_of_liver_female_adult_53_years	chr18	58408793	58408794	58408793	-	High_confidence	854	920	963	27.548631	6.748122	chr18	58408387	58408853	LINE|L2|L2b	+	chr18	58408432	58408781	STRG.86817.1	-	58408432	58408781	0.913811
right_lobe_of_liver_female_adult_53_years	chr7	66150629	66150650	66150629	+	High_confidence	4	5	16	0.457713	2.899397	chr7	66150546	66150667	SINE|MIR|MIR3	+	chr7	66150662	66152652	CRCP|ENST00000492264.1	+	66150662,66152207	66150948,66152652	0.937500
right_lobe_of_liver_female_adult_53_years	chr12	110334130	110334141	110334130	+	RAMPAGE_only	4	5	9	0.257464	2.750000	chr12	110334168	110334585	LINE|L2|L2a	+	chr12	110292048	110346621	ATP2A2|ENST00000548169.2	+	110292048,110296598,110326389,110327552,110332596,110333180,110334011,110339280,110339502,110340658,110342227,110343231,110344885,110345248,110346000,110346200	110292124,110296737,110326475,110328017,110332685,110333283,110334143,110339403,110339721,110340994,110342448,110343434,110344971,110345382,110346118,110346621	0.888889
right_lobe_of_liver_female_adult_53_years	chr3	58136031	58136155	58136154	+	RAMPAGE_only	34	34	98	2.803495	5.773073	chr3	58136192	58136456	SINE|MIR|MIRb	+	chr3	58132077	58172251	FLNB|ENST00000481470.5	+	58132077,58134615,58135978,58138281,58142649,58143472,58145920,58146819,58148205,58148648,58149849,58150104,58153374,58154790,58155959,58159553,58163153,58168439,58170574	58132931,58134772,58136168,58138529,58142752,58143613,58146049,58146993,58148364,58148852,58150002,58150227,58153641,58154928,58156075,58159686,58163330,58169793,58172251	0.846939
right_lobe_of_liver_female_adult_53_years	chr18	36807869	36807870	36807869	-	High_confidence	16	16	23	0.657963	4.229871	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.782609
right_lobe_of_liver_female_adult_53_years	chr6	82234173	82234174	82234173	-	RAMPAGE_only	4	5	7	0.200250	2.521641	chr6	82234054	82234138	SINE|Alu|AluSz	-	chr6	82169985	82240565	IBTK|ENST00000505222.5	-	82169985,82172379,82173366,82181878,82191072,82194478,82196297,82200140,82200586,82201421,82202527,82204856,82210813,82211366,82211489,82212706,82216075,82217959,82220589,82223439,82224067,82225476,82227191,82231717,82234158,82240165	82171556,82172512,82173438,82182028,82191879,82194642,82196446,82200253,82200708,82201482,82202645,82204958,82210910,82211404,82211572,82212793,82216250,82218137,82220713,82223620,82224185,82225647,82227302,82231842,82234255,82240565	1.000000
right_lobe_of_liver_female_adult_53_years	chr5	147839235	147839240	147839237	-	High_confidence	4	5	10	0.286071	2.947703	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.800000
right_lobe_of_liver_female_adult_53_years	chr7	138076140	138076143	138076140	+	High_confidence	5	5	10	0.286071	3.121928	chr7	138076186	138076222	LTR|ERVL-MaLR|MLT1L	+	chr7	138076431	138116913	AKR1D1|ENST00000432161.5	+	138076431,138088600,138091767,138097865,138105306,138106607,138107414,138116619	138076611,138088768,138091884,138097943,138105429,138106717,138107580,138116913	0.900000
right_lobe_of_liver_female_adult_53_years	chr7	29376379	29376396	29376393	+	High_confidence	63	72	158	4.519921	5.723899	chr7	29376417	29376587	DNA|hAT-Charlie|MER5A	+	chr7	29376161	29514328	STRG.42125.2	+	29376161,29393678,29398372,29400542,29480278,29495951,29499866,29504743,29507227,29509300,29512563	29376459,29393710,29398486,29400828,29480356,29496036,29500040,29504821,29507365,29509406,29514328	0.905063
right_lobe_of_liver_female_adult_53_years	chr6	131844397	131844423	131844422	+	High_confidence	3	4	9	0.257464	3.169925	chr6	131844197	131845043	DNA|TcMar-Tigger|Tigger6a	+	chr6	131844473	131893825	STRG.39526.4	+	131844473,131847775,131849989,131851141,131852174,131854925,131858667,131860386,131861594,131864505,131864865,131868017,131869357,131872069,131872922,131874267,131875775,131876991,131878541,131879879,131882344,131883693,131884930,131886561,131890340	131844980,131847848,131850106,131851267,131852235,131855023,131858747,131860506,131861704,131864571,131864938,131868126,131869489,131872101,131873050,131874337,131875863,131877161,131878593,131880034,131882474,131883774,131885063,131886724,131893825	1.000000
right_lobe_of_liver_female_adult_53_years	chr1	54277364	54277365	54277364	-	High_confidence	726	785	944	27.005096	5.987269	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54226919	54277401	STRG.2015.5	-	54226919,54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54257126,54276983	54227160,54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257186,54277401	0.942797
right_lobe_of_liver_female_adult_53_years	chr8	143020891	143020978	143020977	+	RAMPAGE_only	11	15	86	2.460210	5.276336	chr8	143021012	143021252	LINE|L2|L2b	+	chr8	143018556	143021892	LY6E|ENST00000522024.1	+	143018556,143018832,143020887,143021313,143021565	143018586,143019119,143020991,143021433,143021892	0.825581
right_lobe_of_liver_female_adult_53_years	chr14	81427441	81427467	81427441	-	High_confidence	5	5	16	0.457713	3.373557	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.812500
right_lobe_of_liver_female_adult_53_years	chr1	112956793	112956813	112956793	+	High_confidence	15	15	36	1.029855	4.947703	chr1	112956705	112956908	SINE|MIR|MIR	+	chr1	112956519	112968398	SLC16A1-AS1|ENST00000420168.1	+	112956519,112960476,112968034	112956956,112960575,112968398	0.527778
right_lobe_of_liver_female_adult_53_years	chr3	193614852	193614861	193614860	+	High_confidence	7	8	17	0.486321	3.381580	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	47214439	47214472	47214471	+	High_confidence	4	6	24	0.686570	4.136842	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214464	47216873	DDB2|ENST00000622878.4	+	47214464,47215070,47216335,47216857	47214674,47215263,47216472,47216873	0.833333
right_lobe_of_liver_female_adult_53_years	chr6	63532368	63532432	63532390	+	RAMPAGE_only	4	4	30	0.858213	4.072906	chr6	63532336	63532764	DNA|hAT-Tip100|Arthur1B	-	chr6	63521760	63576582	PTP4A1|ENST00000470661.1	+	63521760,63527818,63576435	63521826,63528084,63576582	0.800000
right_lobe_of_liver_female_adult_53_years	chr14	77076182	77076194	77076193	-	High_confidence	31	32	101	2.889316	5.936132	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77074232	77076175	STRG.75384.1	-	77074232,77076104	77074598,77076175	0.811881
right_lobe_of_liver_female_adult_53_years	chr11	14611121	14611129	14611121	-	RAMPAGE_only	2	2	7	0.200250	2.807355	chr11	14611111	14611345	LTR|ERVL|LTR79	-	chr11	14505063	14643617	PSMA1|ENST00000418988.2	-	14505063,14507655,14510871,14513569,14513816,14514402,14517641,14517879,14518996,14610965,14643454	14505248,14507766,14510951,14513699,14513887,14514491,14517745,14517981,14519041,14611151,14643617	0.571429
right_lobe_of_liver_female_adult_53_years	chr17	20921027	20921028	20921027	+	High_confidence	6	6	8	0.228857	2.750000	chr17	20920944	20921033	LINE|L2|L2a	+	chr17	20921044	20930046	CCDC144NL-AS1|ENST00000443508.6	+	20921044,20924358,20929430	20921169,20924833,20930046	1.000000
right_lobe_of_liver_female_adult_53_years	chr4	69738964	69739004	69738976	-	RAMPAGE_only	7	9	31	0.886820	4.542748	chr4	69738649	69740208	LTR|ERVL-MaLR|THE1D-int	-	chr4	69726090	69760673	STRG.26531.3	-	69726090,69730500,69733412,69734137,69749720,69754669,69755069,69760458	69727200,69730681,69733507,69734264,69749818,69754798,69758489,69760673	0.870968
right_lobe_of_liver_female_adult_53_years	chr1	88647466	88647491	88647478	+	RAMPAGE_only	56	58	182	5.206491	6.050091	chr1	88647368	88647565	LTR|ERVL-MaLR|MLT1O	-	chr1	88684143	88836255	PKN2|NM_006256.3	+	88684143,88740987,88760221,88770351,88771420,88771662,88784638,88786103,88804390,88804845,88805496,88805890,88807312,88807528,88807683,88813556,88821940,88824309,88828480,88832743,88833076,88833244	88684628,88741288,88760376,88770469,88771566,88771879,88784824,88786213,88804534,88804921,88805671,88806017,88807443,88807604,88807775,88813733,88822003,88824386,88828623,88832851,88833157,88836255	0.802198
right_lobe_of_liver_female_adult_53_years	chr16	89904192	89904195	89904193	+	High_confidence	2	4	7	0.200250	2.584963	chr16	89904174	89904222	LINE|CR1|L3	+	chr16	89905008	89909174	TCF25|ENST00000563484.1	+	89905008,89906193,89907242,89908965	89905096,89906284,89907322,89909174	0.571429
right_lobe_of_liver_female_adult_53_years	chr19	39485793	39485803	39485793	+	High_confidence	9	9	18	0.514928	3.836592	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	65440612	65440791	65440659	+	RAMPAGE_only	18	40	271	7.752522	5.871712	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65423637	65445540	STRG.62879.5	+	65423637,65434274	65434178,65445540	1.000000
right_lobe_of_liver_female_adult_53_years	chr4	39032900	39032921	39032920	-	High_confidence	9	11	17	0.486321	3.625000	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	38993734	39032922	TMEM156|ENST00000344606.6	-	38993734,38998723,39032225,39032641	38993998,38998909,39032443,39032922	0.588235
right_lobe_of_liver_female_adult_53_years	chr10	7706622	7706632	7706622	+	RAMPAGE_only	3	3	8	0.228857	2.807355	chr10	7706478	7706833	LINE|L2|L2c	-	chr10	7703399	7749339	ITIH2|ENST00000379587.4	+	7703399,7705107,7709021,7713180,7717625,7720855,7721648,7723450,7726949,7727702,7729951,7731810,7732337,7734921,7738620,7743145,7744081,7744790,7746592,7749186	7703518,7705182,7709191,7713285,7717788,7720963,7721777,7723567,7727118,7727828,7730133,7731996,7732477,7735091,7738758,7743259,7744280,7744963,7746704,7749339	0.750000
right_lobe_of_liver_female_adult_53_years	chr15	48783156	48783178	48783171	+	High_confidence	49	49	187	5.349526	5.643375	chr15	48783168	48783602	DNA|TcMar-Tigger|Tigger8	+	chr15	48783189	48787092	STRG.77500.1	+	48783189,48783850,48784081,48786933	48783371,48783985,48784254,48787092	0.951872
right_lobe_of_liver_female_adult_53_years	chr20	37297344	37297345	37297344	+	High_confidence	13	13	13	0.371892	3.700440	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
right_lobe_of_liver_female_adult_53_years	chr7	99658756	99659358	99658756	-	RAMPAGE_only	17	19	506	14.475189	6.418963	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648197	99660602	STRG.44969.25	-	99648197,99650072,99652552	99648400,99650232,99660602	0.998024
right_lobe_of_liver_female_adult_53_years	chr13	106561950	106561951	106561950	-	High_confidence	239	243	254	7.266202	6.679929	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.791339
right_lobe_of_liver_female_adult_53_years	chr22	41604048	41604061	41604048	-	RAMPAGE_only	5	6	12	0.343285	3.418296	chr22	41603905	41604023	LINE|L2|L2c	-	chr22	41600892	41602523	DESI1|ENST00000468151.1	-	41600892,41602423	41601190,41602523	0.916667
right_lobe_of_liver_female_adult_53_years	chr16	31092801	31092802	31092801	-	RAMPAGE_only	5	5	7	0.200250	2.521641	chr16	31092766	31093079	SINE|Alu|AluSg	+	chr16	31091103	31094549	VKORC1|ENST00000394971.7	-	31091103,31093311,31094234	31091342,31093421,31094549	0.714286
right_lobe_of_liver_female_adult_53_years	chr6	79631425	79631464	79631441	+	High_confidence	10	11	45	1.287319	4.624752	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
right_lobe_of_liver_female_adult_53_years	chr12	643881	643884	643881	-	High_confidence	4	4	8	0.228857	2.521641	chr12	643825	644012	LINE|L2|L2c	+	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.875000
right_lobe_of_liver_female_adult_53_years	chr5	66690088	66690103	66690088	+	High_confidence	1	1	7	0.200250	2.584963	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66690115	67130488	STRG.30949.1	+	66690115,66736711,66759708,66788669,66899950,66916982,67054403,67090161,67095596,67100434,67102535,67104365,67110097,67114086,67118681,67121016,67130209	66690286,66736821,66759862,66788794,66899982,66917018,67054492,67090231,67095675,67100592,67102611,67104575,67110199,67114219,67118749,67121102,67130488	0.714286
right_lobe_of_liver_female_adult_53_years	chrX	118419229	118419281	118419229	+	RAMPAGE_only	13	26	77	2.202746	5.328529	chrX	118415803	118419707	LINE|L1|L1PB1	-	chrX	118392747	118449336	WDR44|ENST00000371848.3	+	118392747,118394054,118395248,118396969,118398386,118404337,118406874,118409488,118410894,118432780,118436701,118441367,118442243,118442564,118443559,118444359,118447059,118448892	118393271,118394185,118395344,118397106,118398470,118404444,118407026,118409627,118410959,118432894,118436824,118441559,118442345,118442680,118443687,118444494,118447114,118449336	0.948052
right_lobe_of_liver_female_adult_53_years	chr5	73078284	73078288	73078287	+	RAMPAGE_only	5	8	11	0.314678	3.121928	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.727273
right_lobe_of_liver_female_adult_53_years	chr3	52615373	52615384	52615373	-	High_confidence	2	2	9	0.257464	3.000000	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.888889
right_lobe_of_liver_female_adult_53_years	chr19	33395140	33395191	33395177	-	High_confidence	99	120	402	11.500052	6.627262	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	0.975124
right_lobe_of_liver_female_adult_53_years	chr1	171214009	171214029	171214028	-	High_confidence	8	8	21	0.600749	3.826875	chr1	171213836	171214165	LTR|ERV1|MER61A	-	chr1	171199430	171214117	STRG.6353.1	-	171199430,171213797	171199515,171214117	0.523810
right_lobe_of_liver_female_adult_53_years	chr3	12648863	12648864	12648863	-	RAMPAGE_only	5	5	8	0.228857	2.807355	chr3	12648832	12649142	SINE|Alu|AluSp	+	chr3	12584332	12664125	RAF1|ENST00000423275.5	-	12584332,12584846,12585121,12585680,12587590,12590797,12591707,12599690,12600151,12600387,12604135,12606200,12608765,12609232,12618514,12663812	12584657,12584981,12585253,12585799,12587637,12590974,12591792,12599808,12600279,12600415,12604289,12606299,12608923,12609335,12618747,12664125	0.625000
right_lobe_of_liver_female_adult_53_years	chr6	36914680	36914687	36914686	+	RAMPAGE_only	4	5	8	0.228857	2.750000	chr6	36914707	36914996	SINE|Alu|AluSz6	+	chr6	36885863	36928964	C6orf89|NM_152734.3	+	36885863,36899425,36902220,36914283,36914553,36916444,36919577,36923346	36886028,36899633,36902434,36914435,36914693,36916574,36919701,36928964	1.000000
right_lobe_of_liver_female_adult_53_years	chr8	17255383	17255420	17255405	+	RAMPAGE_only	4	4	20	0.572142	3.484184	chr8	17255193	17255484	SINE|Alu|AluSq2	+	chr8	17247122	17295052	VPS37A|ENST00000521829.5	+	17247122,17268257,17268855,17274732,17276396,17280027,17280238,17280374,17284472,17286346,17294986	17247369,17268372,17268956,17274958,17276467,17280155,17280297,17280443,17284616,17286427,17295052	0.950000
right_lobe_of_liver_female_adult_53_years	chr14	94383484	94383649	94383542	-	High_confidence	12	15	128	3.661708	5.020039	chr14	94383392	94383601	SINE|MIR|MIR	-	chr14	94378372	94383246	SERPINA1|ENST00000489769.1	-	94378372,94379463,94380650,94382591	94378640,94379611,94381141,94383246	0.828125
right_lobe_of_liver_female_adult_53_years	chr12	27579333	27579348	27579337	+	RAMPAGE_only	3	3	9	0.257464	3.000000	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.666667
right_lobe_of_liver_female_adult_53_years	chr20	2301382	2301423	2301422	-	RAMPAGE_only	19	19	81	2.317175	4.741883	chr20	2301329	2301448	SINE|MIR|MIR3	+	chr20	2295949	2297284	STRG.90077.1	-	2295949,2297191	2296494,2297284	0.938272
right_lobe_of_liver_female_adult_53_years	chr10	50248786	50248796	50248795	-	High_confidence	5	7	12	0.343285	3.277613	chr10	50248737	50248942	DNA|hAT-Charlie|MER117	-	chr10	50182777	50248610	ASAH2|ENST00000395526.8	-	50182777,50189498,50192652,50196772,50199050,50202828,50203639,50204860,50205981,50210822,50211029,50212971,50214742,50218509,50233183,50234424,50235887,50243201,50245221,50248483	50187504,50189587,50192712,50196919,50199146,50202924,50203679,50204955,50206097,50210904,50211134,50213058,50214868,50218630,50233261,50234552,50236064,50243351,50245454,50248610	0.833333
right_lobe_of_liver_female_adult_53_years	chr11	64620552	64620641	64620606	-	High_confidence	13	13	69	1.973889	4.686651	chr11	64620584	64620687	SINE|tRNA-Deu|AmnSINE2	-	chr11	64606173	64620597	STRG.62837.1	-	64606173,64620293,64620530	64608082,64620372,64620597	0.956522
right_lobe_of_liver_female_adult_53_years	chr1	6820193	6820194	6820193	+	RAMPAGE_only	8	8	12	0.343285	2.845351	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.666667
right_lobe_of_liver_female_adult_53_years	chr11	57496033	57496036	57496035	-	RAMPAGE_only	4	7	10	0.286071	3.169925	chr11	57495848	57495994	SINE|MIR|MIRb	-	chr11	57491252	57494520	SLC43A1|ENST00000529452.5	-	57491252,57491590,57491715,57493992	57491362,57491626,57491862,57494520	0.600000
right_lobe_of_liver_female_adult_53_years	chr11	96387561	96387562	96387561	-	High_confidence	16	16	18	0.514928	3.734522	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	0.888889
right_lobe_of_liver_female_adult_53_years	chr1	95117870	95117897	95117870	+	High_confidence	3	3	9	0.257464	2.947703	chr1	95117576	95117935	LINE|L1|L1M4b	+	chr1	95117922	95244955	TMEM56-RWDD3|ENST00000604534.5	+	95117922,95143890,95148701,95150207,95151324,95173815,95230901,95244210	95118091,95144056,95148791,95150266,95151419,95173889,95230994,95244955	1.000000
right_lobe_of_liver_female_adult_53_years	chr18	26753922	26754003	26753972	-	High_confidence	15	15	52	1.487569	4.534856	chr18	26753863	26754158	SINE|Alu|AluSz	-	chr18	26747450	26754134	STRG.85985.2	-	26747450,26753638	26748159,26754134	0.942308
right_lobe_of_liver_female_adult_53_years	chr3	31592973	31593005	31592999	+	RAMPAGE_only	3	3	12	0.343285	3.251629	chr3	31592726	31593035	LINE|L1|L1M4c	-	chr3	31596805	31620296	STT3B|ENST00000436236.1	+	31596805,31600359,31615104,31616928,31617939,31619675	31596863,31600459,31615203,31617075,31617988,31620296	0.750000
right_lobe_of_liver_female_adult_53_years	chr7	112452365	112452419	112452418	+	High_confidence	3	4	17	0.486321	4.087463	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112477203	IFRD1|NM_001197079.1	+	112452057,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112452511,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112477203	0.941176
right_lobe_of_liver_female_adult_53_years	chr22	24011756	24011757	24011756	+	High_confidence	17	17	17	0.486321	3.454822	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	58940125	58940155	58940125	+	High_confidence	2	2	7	0.200250	2.521641	chr11	58939816	58940740	LTR|ERV1|LOR1-int	+	chr11	58939483	58954821	GLYATL1|ENST00000532726.5	+	58939483,58943542,58947045,58947857,58954769	58939650,58943666,58947165,58947965,58954821	0.857143
right_lobe_of_liver_female_adult_53_years	chr6	63532502	63532504	63532503	+	RAMPAGE_only	5	9	9	0.257464	2.503258	chr6	63532336	63532764	DNA|hAT-Tip100|Arthur1B	-	chr6	63521760	63576582	PTP4A1|ENST00000470661.1	+	63521760,63527818,63576435	63521826,63528084,63576582	0.666667
right_lobe_of_liver_female_adult_53_years	chr7	135171823	135171847	135171846	+	High_confidence	4	4	13	0.371892	3.584963	chr7	135171742	135172083	LTR|ERV1|Harlequin-int	+	chr7	135171747	135172406	STRG.46297.1	+	135171747	135172406	0.615385
right_lobe_of_liver_female_adult_53_years	chr9	129503379	129503385	129503383	+	High_confidence	2	4	8	0.228857	2.807355	chr9	129503303	129503478	SINE|Alu|FAM	-	chr9	129503001	129513517	LINC00963|ENST00000412141.1	+	129503001,129503322,129504891,129513418	129503139,129503672,129505043,129513517	0.500000
right_lobe_of_liver_female_adult_53_years	chr10	95472771	95472832	95472793	-	RAMPAGE_only	4	4	31	0.886820	4.389898	chr10	95472588	95472747	SINE|MIR|MIR	-	chr10	95414743	95482671	SORBS1|ENST00000492542.1	-	95414743,95421960,95432447,95437489,95441125,95482433	95414862,95422073,95432576,95437555,95441180,95482671	0.612903
right_lobe_of_liver_female_adult_53_years	chr11	18239630	18239848	18239724	-	RAMPAGE_only	116	116	345	9.869447	6.436739	chr11	18239491	18239831	LINE|L2|L2	+	chr11	18239222	18248643	SAA2|ENST00000414546.6	-	18239222,18245909,18247920,18248602	18239969,18246048,18248015,18248643	0.898551
right_lobe_of_liver_female_adult_53_years	chr15	45397283	45397346	45397345	-	High_confidence	451	693	2143	61.305001	5.711099	chr15	45397083	45398013	LTR|ERVL|MER21C	+	chr15	45380499	45397346	GATM|ENST00000527933.2	-	45380499,45396166,45396921	45380559,45396253,45397346	0.958936
right_lobe_of_liver_female_adult_53_years	chr11	59041057	59041061	59041057	+	High_confidence	5	6	11	0.314678	3.121928	chr11	59041061	59041739	LTR|ERV1|MER57-int	+	chr11	59040956	59050971	STRG.62560.3	+	59040956,59042694,59043499,59049716,59050121,59050556	59041186,59042814,59043607,59049843,59050299,59050971	0.818182
right_lobe_of_liver_female_adult_53_years	chr1	193473304	193473325	193473304	+	High_confidence	3	3	8	0.228857	3.000000	chr1	193473114	193473705	LTR|ERVL|MLT2F	+	chr1	193473072	194137925	STRG.7227.1	+	193473072,193673209,193886320,193899286,194126139,194133261	193473376,193673292,193886417,193899367,194126185,194137925	0.500000
right_lobe_of_liver_female_adult_53_years	chr3	114872749	114872770	114872762	-	RAMPAGE_only	28	31	76	2.174139	5.729592	chr3	114872710	114872811	SINE|MIR|MIRb	-	chr3	114339303	114900342	ZBTB20|ENST00000479879.5	-	114339303,114380216,114389004,114500351,114801100,114900303	114339426,114380404,114389105,114500391,114801174,114900342	0.500000
right_lobe_of_liver_female_adult_53_years	chr1	52911589	52911648	52911589	-	High_confidence	5	5	24	0.686570	4.334963	chr1	52911549	52911601	LINE|RTE-BovB|MamRTE1	+	chr1	52896231	52911655	ECHDC2|ENST00000543419.5	-	52896231,52897436,52899173,52911565	52896597,52897484,52899224,52911655	0.625000
right_lobe_of_liver_female_adult_53_years	chr11	68773414	68773416	68773414	-	RAMPAGE_only	9	12	15	0.429106	3.506891	chr11	68773373	68773449	LINE|CR1|L3	+	chr11	68754619	68815503	CPT1A|ENST00000540367.5	-	68754619,68759568,68760224,68761534,68762626,68773264,68775315,68780639,68781770,68784814,68793314,68794803,68796855,68799217,68803999,68807466,68812436,68815333	68754851,68759661,68760338,68761687,68762761,68773429,68775432,68780745,68781959,68785010,68793402,68794911,68796933,68799355,68804101,68807638,68812576,68815503	0.933333
right_lobe_of_liver_female_adult_53_years	chr7	101217578	101217599	101217578	-	High_confidence	13	15	51	1.458962	5.158291	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.960784
right_lobe_of_liver_female_adult_53_years	chr18	58088234	58088278	58088277	+	RAMPAGE_only	20	20	58	1.659211	5.431173	chr18	58087897	58088355	LTR|ERVL-MaLR|MLT1F	-	chr18	58047225	58401540	NEDD4L|NM_001144964.1	+	58047225,58165787,58245426,58248898,58252000,58315981,58322424,58323231,58324995,58328994,58330737,58333817,58335477,58341037,58341677,58342905,58349536,58350990,58357193,58364267,58365998,58367745,58370396,58373173,58383245,58385525,58387438,58389084,58390645,58391486,58396166	58047510,58165861,58245508,58248937,58252054,58316032,58322486,58323334,58325162,58329127,58330914,58333892,58335537,58341169,58341797,58343103,58349614,58351045,58357252,58364333,58366228,58367867,58370467,58373269,58383319,58385586,58387498,58389192,58390742,58391559,58401540	0.672414
right_lobe_of_liver_female_adult_53_years	chr4	73509657	73509686	73509685	+	RAMPAGE_only	5	5	12	0.343285	3.095795	chr4	73509595	73509986	LTR|ERVL-MaLR|MLT1A0	-	chr4	73504574	73542831	STRG.27173.8	+	73504574,73508600,73509674,73528412	73508405,73509252,73510343,73542831	0.833333
right_lobe_of_liver_female_adult_53_years	chr8	39082975	39083067	39083066	+	RAMPAGE_only	4	5	25	0.715177	3.763856	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.840000
right_lobe_of_liver_female_adult_53_years	chr1	214312654	214312655	214312654	+	RAMPAGE_only	10	10	13	0.371892	3.418296	chr1	214312302	214313119	LINE|L2|L2a	-	chr1	214281232	214337131	SMYD2|ENST00000366957.9	+	214281232,214305186,214314761,214318078,214318858,214324640,214327621,214330167,214330949,214332017,214334199,214336703	214281427,214305250,214314872,214318139,214318983,214324708,214327724,214330278,214331070,214332192,214334308,214337131	0.923077
right_lobe_of_liver_female_adult_53_years	chr17	14374107	14374138	14374137	+	High_confidence	11	16	51	1.458962	4.878563	chr17	14373785	14374201	LTR|ERVL|LTR16C	-	chr17	14374138	14421026	AC022816.1|ENST00000436469.1	+	14374138,14377283,14382017,14397061,14420656	14374228,14377421,14382112,14397172,14421026	0.627451
right_lobe_of_liver_female_adult_53_years	chr17	79733243	79733260	79733243	-	High_confidence	4	4	19	0.543535	3.892407	chr17	79733061	79733306	LINE|L1|L1ME4b	-	chr17	79732387	79733022	STRG.85118.1	-	79732387	79733022	0.894737
right_lobe_of_liver_female_adult_53_years	chr14	94283719	94284086	94283719	-	RAMPAGE_only	119	141	1179	33.727763	6.492059	chr14	94283344	94283825	DNA|TcMar-Tigger|MER44B	+	chr14	94283354	94290648	SERPINA10|ENST00000554173.1	-	94283354,94286107,94288285,94289875	94284156,94286258,94288559,94290648	0.983036
right_lobe_of_liver_female_adult_53_years	chr3	149392105	149392146	149392145	-	High_confidence	8	8	39	1.115677	4.958354	chr3	149391643	149392476	LINE|L1|L1MC5	-	chr3	149387263	149392089	STRG.22857.1	-	149387263,149390329,149392063	149387826,149390422,149392089	0.641026
right_lobe_of_liver_female_adult_53_years	chr17	32479860	32479861	32479860	+	High_confidence	26	26	34	0.972641	4.476410	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.823529
right_lobe_of_liver_female_adult_53_years	chr9	26936429	26936452	26936429	-	RAMPAGE_only	4	4	19	0.543535	3.524945	chr9	26936385	26936858	LINE|L1|L1M4c	+	chr9	26925892	26946983	PLAA|ENST00000523212.1	-	26925892,26926392,26928099,26928307,26935012,26946896	26925960,26926560,26928220,26928408,26935197,26946983	0.894737
right_lobe_of_liver_female_adult_53_years	chr12	50763499	50763509	50763508	+	High_confidence	4	4	8	0.228857	2.521641	chr12	50763350	50763657	SINE|Alu|AluJo	+	chr12	50763709	50814192	ATF1|ENST00000552510.5	+	50763709,50780139,50795908,50809455,50814009	50763741,50780238,50796009,50809589,50814192	0.750000
right_lobe_of_liver_female_adult_53_years	chr2	55267613	55267632	55267622	-	High_confidence	11	12	37	1.058462	5.047291	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.945946
right_lobe_of_liver_female_adult_53_years	chr17	76345551	76345575	76345574	-	RAMPAGE_only	6	7	17	0.486321	4.087463	chr17	76345479	76345626	SINE|Alu|AluJb	+	chr17	76328716	76353452	PRPSAP1|ENST00000436498.6	-	76328716,76330042,76330550,76332262,76344670,76348528,76353060	76328862,76330098,76330666,76332435,76344737,76348581,76353452	0.705882
right_lobe_of_liver_female_adult_53_years	chr12	643845	643851	643845	-	High_confidence	2	2	7	0.200250	2.521641	chr12	643825	644012	LINE|L2|L2c	+	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	1.000000
right_lobe_of_liver_female_adult_53_years	chr1	212792418	212792426	212792424	-	High_confidence	3	5	12	0.343285	3.584963	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.833333
right_lobe_of_liver_female_adult_53_years	chr1	147173260	147173261	147173260	+	High_confidence	6	6	9	0.257464	3.000000	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.888889
right_lobe_of_liver_female_adult_53_years	chr6	113873326	113873347	113873339	-	High_confidence	81	91	435	12.444086	5.756980	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.910345
right_lobe_of_liver_female_adult_53_years	chrX	139551073	139551218	139551206	+	RAMPAGE_only	20	21	219	6.264953	6.469887	chrX	139551151	139551275	DNA|hAT-Ac|OldhAT1	+	chrX	139544680	139563301	F9|ENST00000643157.1	+	139544680,139547304,139548362,139551061,139560740,139561523,139563105	139545148,139547894,139548491,139551264,139560855,139561741,139563301	0.831050
right_lobe_of_liver_female_adult_53_years	chr12	53033998	53034022	53034021	+	RAMPAGE_only	7	7	13	0.371892	3.251629	chr12	53034069	53034237	DNA|hAT-Charlie|MER20B	+	chr12	53037725	53040352	EIF4B|ENST00000549592.1	+	53037725,53039629,53040142	53039343,53039702,53040352	0.615385
right_lobe_of_liver_female_adult_53_years	chr7	150325882	150325934	150325933	+	RAMPAGE_only	6	6	16	0.457713	3.506891	chr7	150325771	150325966	DNA|hAT-Charlie|Chap1_Mam	+	chr7	150323290	150337672	LRRC61|ENST00000493307.1	+	150323290,150324357,150325840,150336717	150323560,150324418,150326010,150337672	0.562500
right_lobe_of_liver_female_adult_53_years	chr7	27641733	27641743	27641738	-	RAMPAGE_only	4	6	16	0.457713	3.452820	chr7	27641615	27641740	DNA|TcMar-Mariner|MARNA	+	chr7	27525474	27662868	HIBADH|ENST00000428288.2	-	27525474,27531191,27538340,27542966,27629370,27632335,27662697	27526372,27531348,27538417,27543100,27629492,27632445,27662868	0.625000
right_lobe_of_liver_female_adult_53_years	chr4	186260158	186260218	186260194	+	RAMPAGE_only	26	28	114	3.261209	6.219521	chr4	186259848	186260334	DNA|hAT-Charlie|MER1A	-	chr4	186265944	186288780	F11|ENST00000403665.6	+	186265944,186267135,186271608,186273070,186274115,186275786,186276230,186280011,186280222,186280473,186284091,186285637,186286414,186287683,186288452	186266295,186267191,186271771,186273177,186274275,186275896,186276390,186280121,186280385,186280580,186284260,186285813,186286510,186287823,186288780	0.868421
right_lobe_of_liver_female_adult_53_years	chr7	99656178	99656384	99656202	-	RAMPAGE_only	7	7	99	2.832102	5.094647	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648197	99660602	STRG.44969.25	-	99648197,99650072,99652552	99648400,99650232,99660602	0.959596
right_lobe_of_liver_female_adult_53_years	chr2	96638016	96638023	96638022	-	High_confidence	4	4	9	0.257464	3.000000	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.777778
right_lobe_of_liver_female_adult_53_years	chr2	211020459	211020492	211020459	+	High_confidence	20	21	76	2.174139	4.658873	chr2	211019512	211021367	LINE|L1|L1PB1	-	chr2	211020501	211441851	STRG.17253.1	+	211020501,211081488,211097909,211441570	211020534,211081609,211097976,211441851	0.802632
right_lobe_of_liver_female_adult_53_years	chr7	107580245	107580267	107580264	+	High_confidence	586	586	2840	81.244145	6.717709	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107621870	STRG.45142.2	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107618327,107619843	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107619257,107621870	0.958099
right_lobe_of_liver_female_adult_53_years	chr10	46784772	46784797	46784791	-	High_confidence	5	5	15	0.429106	3.807355	chr10	46784655	46784846	LINE|L2|L2c	-	chr10	46759018	46784204	GLUD1P2|ENST00000630097.2	-	46759018,46768208,46770738,46772428,46776752,46778656,46784085	46759160,46768292,46770802,46772484,46776833,46778716,46784204	0.733333
right_lobe_of_liver_female_adult_53_years	chr6	43013319	43013393	43013392	-	High_confidence	9	9	43	1.230105	4.926037	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
right_lobe_of_liver_female_adult_53_years	chr10	96594298	96594436	96594435	-	RAMPAGE_only	29	35	308	8.810985	5.262908	chr10	96594221	96594551	DNA|TcMar-Tigger|MER2B	-	chr10	96593311	96720514	PIK3AP1|ENST00000339364.9	-	96593311,96602279,96603978,96609711,96616638,96620351,96623471,96626707,96628397,96645472,96648658,96651247,96651508,96652697,96656797,96709566,96720381	96595634,96602398,96604049,96609867,96616711,96620557,96623537,96626905,96628493,96645662,96648855,96651380,96651651,96652842,96656934,96709983,96720514	1.000000
right_lobe_of_liver_female_adult_53_years	chr6	54062909	54062941	54062909	+	High_confidence	49	50	181	5.177884	6.008093	chr6	54062920	54063225	SINE|Alu|AluSq2	+	chr6	54062926	54190298	STRG.37510.6	+	54062926,54121446,54124472,54149055,54160366,54169527,54189869	54063245,54121602,54124865,54149127,54160432,54169572,54190298	0.961326
right_lobe_of_liver_female_adult_53_years	chr7	99654465	99654606	99654605	-	RAMPAGE_only	8	9	84	2.402996	5.195847	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648197	99660602	STRG.44969.25	-	99648197,99650072,99652552	99648400,99650232,99660602	1.000000
right_lobe_of_liver_female_adult_53_years	chr10	27509898	27509928	27509898	+	RAMPAGE_only	7	7	22	0.629356	3.970573	chr10	27509948	27510212	LINE|L2|L2c	+	chr10	27504618	27537966	RAB18|ENST00000423465.1	+	27504618,27504978,27509874,27526827,27531528,27532506,27533734,27533927,27537875	27504724,27505190,27509930,27526889,27531615,27532579,27533853,27533994,27537966	0.909091
right_lobe_of_liver_female_adult_53_years	chr8	17803594	17803608	17803594	+	RAMPAGE_only	3	3	8	0.228857	2.521641	chr8	17803546	17803836	SINE|Alu|AluSx1	+	chr8	17808940	17820868	AC027117.1|ENST00000520646.1	+	17808940,17809596,17820357	17809005,17809687,17820868	0.500000
right_lobe_of_liver_female_adult_53_years	chr1	54867168	54867169	54867168	-	RAMPAGE_only	4	4	7	0.200250	2.584963	chr1	54867161	54867293	SINE|MIR|MIRb	+	chr1	54852366	54886836	DHCR24|ENST00000647585.1	-	54852366,54853433,54854036,54865302,54871349,54875092,54875941,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54883773,54886836	0.857143
right_lobe_of_liver_female_adult_53_years	chr1	54850356	54850912	54850845	-	RAMPAGE_only	92	97	1008	28.835950	6.962110	chr1	54850787	54850913	SINE|MIR|MIR3	-	chr1	54849663	54886890	DHCR24|ENST00000648712.1	-	54849663,54853433,54854036,54865302,54871349,54875092,54875941,54879059,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54879319,54883773,54886890	0.974206
right_lobe_of_liver_female_adult_53_years	chr8	124619511	124619517	124619513	-	High_confidence	19	33	51	1.458962	3.697393	chr8	124619245	124619557	LINE|L2|L2c	+	chr8	124589664	124619479	MTSS1|ENST00000519671.1	-	124589664,124591150,124619266	124589711,124591235,124619479	0.784314
right_lobe_of_liver_female_adult_53_years	chr1	153967486	153967517	153967486	+	High_confidence	8	10	46	1.315926	4.728197	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.739130
right_lobe_of_liver_female_adult_53_years	chr3	52704813	52704835	52704834	+	High_confidence	4	4	10	0.286071	3.321928	chr3	52704708	52704996	LINE|L2|L2b	+	chr3	52704954	52708157	SPCS1|ENST00000423431.5	+	52704954,52706643,52706792,52707686	52705158,52706703,52706879,52708157	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	74697560	74697563	74697562	-	High_confidence	4	7	9	0.257464	2.947703	chr11	74697389	74697636	LINE|L2|L2c	+	chr11	74696428	74697694	CHRDL2|ENST00000529912.5	-	74696428,74697204,74697600	74696585,74697297,74697694	0.777778
right_lobe_of_liver_female_adult_53_years	chr10	45000266	45000292	45000291	+	High_confidence	37	40	167	4.777385	6.149211	chr10	45000000	45000445	LINE|L2|L2	-	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.640719
right_lobe_of_liver_female_adult_53_years	chr17	60887022	60887026	60887025	+	High_confidence	4	4	9	0.257464	2.947703	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.888889
right_lobe_of_liver_female_adult_53_years	chr14	102947722	102947754	102947722	-	RAMPAGE_only	2	3	10	0.286071	2.947703	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102944042	102968532	CDC42BPB|ENST00000559043.1	-	102944042,102945661,102946467,102947720,102949764,102950465,102952497,102954601,102959630,102963060,102964501,102966281,102967045,102968252,102968471	102944487,102945724,102946684,102947802,102949904,102950602,102952603,102954688,102959710,102963155,102964650,102966387,102967170,102968358,102968532	0.700000
right_lobe_of_liver_female_adult_53_years	chr16	253927	253928	253927	+	High_confidence	9	9	9	0.257464	2.947703	chr16	253772	253931	SINE|MIR|MIR	-	chr16	254627	260788	FAM234A|ENST00000421000.1	+	254627,259482,259968,260412	254681,259599,260160,260788	0.777778
right_lobe_of_liver_female_adult_53_years	chr22	26532705	26532706	26532705	-	RAMPAGE_only	10	10	11	0.314678	3.121928	chr22	26532568	26532679	SINE|MIR|MIR3	-	chr22	26525745	26565368	TPST2|ENST00000398110.6	-	26525745,26528213,26532694,26536287,26540788,26544603,26565223	26526267,26528262,26532745,26536486,26541718,26544675,26565368	0.818182
right_lobe_of_liver_female_adult_53_years	chr9	37603198	37603231	37603198	+	RAMPAGE_only	2	2	11	0.314678	3.277613	chr9	37603152	37603302	SINE|MIR|MIR3	+	chr9	37650999	37746904	FRMPD1|ENST00000377765.7	+	37650999,37692637,37707415,37708398,37711349,37719068,37724224,37729727,37730983,37732303,37733472,37733729,37735551,37737095,37740077,37744388	37651094,37692742,37707573,37708501,37711395,37719176,37724320,37729853,37731103,37732440,37733599,37733825,37735734,37737243,37740884,37746904	0.636364
right_lobe_of_liver_female_adult_53_years	chr1	196975033	196975080	196975061	+	RAMPAGE_only	9	9	46	1.315926	5.126504	chr1	196974981	196976153	LINE|L2|L2	-	chr1	196977536	197009674	CFHR5|NM_030787.3	+	196977536,196982884,196983960,196994079,196995716,196996021,196998127,197002481,197004660,197008486	196977722,196983079,196984137,196994256,196995899,196996201,196998304,197002664,197004843,197009674	0.608696
right_lobe_of_liver_female_adult_53_years	chr16	13246215	13246262	13246231	+	High_confidence	6	6	42	1.201498	5.021928	chr16	13246112	13246474	LTR|ERVL-MaLR|THE1B	+	chr16	13246315	13562918	U91319.1|ENST00000571619.5	+	13246315,13258332,13350179,13474209,13562706	13246390,13258435,13350421,13474341,13562918	0.523810
right_lobe_of_liver_female_adult_53_years	chr15	92914950	92914974	92914973	+	High_confidence	10	10	21	0.600749	4.201841	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.904762
right_lobe_of_liver_female_adult_53_years	chr5	27472270	27472294	27472283	+	RAMPAGE_only	10	10	26	0.743784	4.136842	chr5	27472073	27472487	LTR|ERV1|MER61C	+	chr5	27475603	27476116	STRG.29823.1	+	27475603	27476116	0.730769
right_lobe_of_liver_female_adult_53_years	chr6	26956584	26956614	26956588	-	High_confidence	3	3	14	0.400499	3.180833	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.571429
right_lobe_of_liver_female_adult_53_years	chr4	168998286	168998287	168998286	-	RAMPAGE_only	7	7	9	0.257464	2.725481	chr4	168998173	168998411	LINE|L1|L1ME4b	+	chr4	168987589	169010254	STRG.28972.2	-	168987589,169002070,169006754,169007635,169009947	168998285,169002205,169006891,169007756,169010254	1.000000
right_lobe_of_liver_female_adult_53_years	chr12	112506707	112506708	112506707	+	RAMPAGE_only	18	18	18	0.514928	4.058814	chr12	112506599	112506946	LTR|ERVL-MaLR|MLT1H	-	chr12	112418913	112509913	PTPN11|ENST00000351677.6	+	112418913,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486474,112488442,112489023,112502143,112504694,112505824	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504796,112509913	1.000000
right_lobe_of_liver_female_adult_53_years	chr22	37110520	37110536	37110535	-	High_confidence	8	8	25	0.715177	4.175736	chr22	37110468	37110704	DNA|hAT-Charlie|MER33	+	chr22	37065435	37109713	TMPRSS6|ENST00000406856.7	-	37065435,37066825,37068615,37069072,37070483,37070915,37073531,37074609,37075134,37084294,37084726,37086282,37089577,37095550,37095905,37096647,37098415,37103215,37109502	37066238,37066962,37068681,37069344,37070652,37071032,37073645,37074708,37075280,37084404,37084839,37086419,37089782,37095592,37096090,37096715,37098549,37103418,37109713	0.920000
right_lobe_of_liver_female_adult_53_years	chrX	147937579	147937599	147937579	+	RAMPAGE_only	2	2	6	0.171643	2.584963	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.500000
right_lobe_of_liver_female_adult_53_years	chr1	196794327	196794490	196794327	+	RAMPAGE_only	16	20	104	2.975138	3.534910	chr1	196794183	196794475	SINE|Alu|AluSx	+	chr1	196774815	196797782	STRG.7464.9	+	196774815,196779161,196779796,196788215,196790044,196793316,196794598	196774944,196779356,196779973,196788398,196790227,196794508,196797782	0.942308
right_lobe_of_liver_female_adult_53_years	chr2	55268595	55268606	55268595	-	High_confidence	5	5	11	0.314678	3.459432	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	0.909091
right_lobe_of_liver_female_adult_53_years	chr2	101998960	101998978	101998960	+	High_confidence	16	16	66	1.888068	5.347274	chr2	101998446	101999045	LTR|ERVL-MaLR|MLT1H1	-	chr2	101998961	102028423	IL1R2|NR_048564.1	+	101998961,102008514,102009561,102015870,102019637,102022186,102024532,102026110,102028225	101999116,102008642,102009826,102016051,102019812,102022249,102024668,102026253,102028423	0.893939
right_lobe_of_liver_female_adult_53_years	chr1	20154433	20154456	20154453	+	High_confidence	5	6	15	0.429106	3.640224	chr1	20154321	20156816	LTR|ERV1|HERVE-int	+	chr1	20154337	20160568	Z98257.1|ENST00000417884.1	+	20154337,20159611	20154463,20160568	0.866667
right_lobe_of_liver_female_adult_53_years	chr1	171517792	171517814	171517813	+	RAMPAGE_only	6	6	14	0.400499	3.664498	chr1	171517862	171517949	DNA|hAT-Charlie|Charlie4a	+	chr1	171522514	171524855	PRRC2C|ENST00000480806.1	+	171522514,171523220,171523434,171524820	171522556,171523354,171523522,171524855	0.500000
right_lobe_of_liver_female_adult_53_years	chr12	64439294	64439308	64439294	+	RAMPAGE_only	5	5	10	0.286071	2.947703	chr12	64439324	64439679	DNA|hAT-Charlie|Charlie4a	+	chr12	64404372	64448684	XPOT|NM_007235.4	+	64404372,64409961,64414906,64416697,64418045,64418875,64420069,64420352,64421234,64423004,64423181,64424598,64425037,64425337,64425814,64428050,64430048,64431537,64433413,64434506,64434793,64435626,64439243,64445074,64448104	64404804,64410095,64414989,64416754,64418115,64419094,64420254,64420521,64421471,64423043,64423244,64424723,64425182,64425457,64425909,64428120,64430287,64431823,64433603,64434623,64434909,64435674,64439315,64445131,64448684	0.900000
right_lobe_of_liver_female_adult_53_years	chr6	44126632	44126633	44126632	+	High_confidence	251	253	325	9.297305	6.292959	chr6	44126578	44126686	LINE|CR1|X7A_LINE	-	chr6	44126607	44140328	STRG.37116.3	+	44126607,44126797,44134560,44135016,44135327,44136348,44138479,44139466,44139707,44140251	44126715,44127141,44134743,44135096,44135366,44136439,44138517,44139609,44139759,44140328	0.966154
right_lobe_of_liver_female_adult_53_years	chr5	63154670	63154684	63154683	+	High_confidence	15	16	28	0.800999	4.458591	chr5	63154591	63154983	LTR|ERVL|MLT2A1	+	chr5	63154703	63330746	STRG.30771.1	+	63154703,63301523,63301930,63317768,63330517	63154944,63301693,63302044,63317856,63330746	0.642857
right_lobe_of_liver_female_adult_53_years	chr5	57650643	57650678	57650677	+	High_confidence	83	90	465	13.302298	7.135442	chr5	57650666	57651278	LINE|L1|L1PB4	-	chr5	57650662	57673099	STRG.30486.4	+	57650662,57665250	57650869,57673099	0.726882
right_lobe_of_liver_female_adult_53_years	chr1	54865666	54865688	54865666	-	RAMPAGE_only	14	14	38	1.087070	4.148956	chr1	54865506	54865684	SINE|MIR|MIRc	-	chr1	54852366	54886836	DHCR24|ENST00000647585.1	-	54852366,54853433,54854036,54865302,54871349,54875092,54875941,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54883773,54886836	0.894737
right_lobe_of_liver_female_adult_53_years	chr3	37058889	37058909	37058908	-	RAMPAGE_only	10	11	26	0.743784	3.997953	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.961538
right_lobe_of_liver_female_adult_53_years	chr1	171251817	171251850	171251849	-	High_confidence	3	3	12	0.343285	3.095795	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171247579	171251794	AL445673.1|ENST00000455124.2	-	171247579,171251522	171247723,171251794	0.500000
right_lobe_of_liver_female_adult_53_years	chr6	131844711	131844749	131844748	+	High_confidence	3	3	9	0.257464	2.750000	chr6	131844197	131845043	DNA|TcMar-Tigger|Tigger6a	+	chr6	131844473	131893825	STRG.39526.4	+	131844473,131847775,131849989,131851141,131852174,131854925,131858667,131860386,131861594,131864505,131864865,131868017,131869357,131872069,131872922,131874267,131875775,131876991,131878541,131879879,131882344,131883693,131884930,131886561,131890340	131844980,131847848,131850106,131851267,131852235,131855023,131858747,131860506,131861704,131864571,131864938,131868126,131869489,131872101,131873050,131874337,131875863,131877161,131878593,131880034,131882474,131883774,131885063,131886724,131893825	0.777778
right_lobe_of_liver_female_adult_53_years	chr2	101281864	101281865	101281864	-	RAMPAGE_only	5	5	7	0.200250	2.807355	chr2	101281489	101281823	SINE|Alu|AluJo	-	chr2	101276090	101308696	RNF149|ENST00000295317.3	-	101276090,101281858,101286080,101288972,101294013,101294930,101308128	101277281,101282057,101286177,101289055,101294082,101295181,101308696	1.000000
right_lobe_of_liver_female_adult_53_years	chr2	200588166	200588170	200588166	+	High_confidence	18	19	34	0.972641	4.675698	chr2	200587906	200588390	LINE|L2|L2a	-	chr2	200588173	200603297	AOX1|ENST00000454629.1	+	200588173,200593145,200595271,200597396,200599619,200602283,200603266	200588270,200593203,200595368,200597505,200599746,200602345,200603297	0.764706
right_lobe_of_liver_female_adult_53_years	chr1	168247875	168247922	168247875	+	RAMPAGE_only	2	2	13	0.371892	2.931209	chr1	168247230	168248320	LINE|L1|L1PA7	-	chr1	168226007	168253025	SFT2D2|ENST00000271375.6	+	168226007,168231513,168231833,168235100,168236588,168236711,168239130,168242500	168226142,168231600,168231919,168235182,168236624,168236770,168239160,168253025	1.000000
right_lobe_of_liver_female_adult_53_years	chr1	65601849	65601891	65601849	+	RAMPAGE_only	17	21	128	3.661708	5.587721	chr1	65601809	65601923	SINE|MIR|MIR1_Amn	-	chr1	65565545	65626234	LEPR|ENST00000371058.1	+	65565545,65570472,65572325,65592656,65596447,65598659,65601391,65601842,65605037,65608752,65609946,65610213,65616007,65617963,65619927,65621352,65622905,65626122	65565605,65570802,65572449,65592865,65596593,65598804,65601682,65601960,65605237,65608901,65610106,65610296,65616224,65618146,65620023,65621458,65622981,65626234	0.976562
right_lobe_of_liver_female_adult_53_years	chr1	45522970	45522994	45522970	-	High_confidence	4	4	14	0.400499	3.664498	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45514506	45523047	PRDX1|ENST00000424390.1	-	45514506,45514872,45515653,45518937,45522777	45514637,45514995,45515807,45519054,45523047	0.857143
right_lobe_of_liver_female_adult_53_years	chr4	69058365	69058367	69058366	-	RAMPAGE_only	7	12	15	0.429106	3.640224	chr4	69058116	69058445	LTR|ERV1|HERV3-int	+	chr4	69045905	69047141	STRG.26479.1	-	69045905	69047141	0.733333
right_lobe_of_liver_female_adult_53_years	chr19	9140393	9140428	9140393	+	High_confidence	54	54	187	5.349526	6.003030	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.844920
right_lobe_of_liver_female_adult_53_years	chr3	177896611	177896633	177896611	+	RAMPAGE_only	3	3	6	0.171643	2.584963	chr3	177896609	177898078	LINE|L1|L1M3c	+	chr3	177816864	177899224	LINC02015|ENST00000436078.5	+	177816864,177895612,177896563	177816996,177895776,177899224	0.833333
right_lobe_of_liver_female_adult_53_years	chr11	102397059	102397770	102397743	-	RAMPAGE_only	132	143	910	26.032455	7.200629	chr11	102397661	102397799	DNA|hAT-Charlie|Charlie16a	-	chr11	102396331	102452839	TMEM123|ENST00000361236.7	-	102396331,102401538,102401915,102452523	102398891,102401692,102402206,102452839	0.996703
right_lobe_of_liver_female_adult_53_years	chr7	134432435	134432458	134432435	-	High_confidence	9	10	28	0.800999	3.495603	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	1.000000
right_lobe_of_liver_female_adult_53_years	chr10	94683450	94683510	94683483	+	High_confidence	91	92	417	11.929158	6.245485	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_000772.2	+	94683493,94687769,94688124,94694916,94706783,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94706960,94720537,94724533,94733438,94736190	0.995204
right_lobe_of_liver_female_adult_53_years	chr11	58940222	58940240	58940222	+	High_confidence	8	8	13	0.371892	3.188722	chr11	58939816	58940740	LTR|ERV1|LOR1-int	+	chr11	58939483	58954821	GLYATL1|ENST00000532726.5	+	58939483,58943542,58947045,58947857,58954769	58939650,58943666,58947165,58947965,58954821	0.769231
right_lobe_of_liver_female_adult_53_years	chr2	43486716	43486717	43486716	-	High_confidence	13	14	18	0.514928	3.572469	chr2	43486640	43486924	DNA|hAT-Charlie|MER102b	-	chr2	43286984	43486672	STRG.11153.6	-	43286984,43291695,43292103,43292833,43320445,43344121,43397970,43428099,43430212,43485233,43486436	43287061,43291768,43292222,43293213,43320540,43344237,43398139,43428231,43430302,43485325,43486672	0.944444
right_lobe_of_liver_female_adult_53_years	chr20	38346075	38346076	38346075	+	High_confidence	190	191	222	6.350775	5.429552	chr20	38346041	38346224	SINE|MIR|MIRb	+	chr20	38346355	38377023	LBP|ENST00000217407.2	+	38346355,38349547,38350810,38354283,38355345,38360703,38363974,38364575,38366768,38368994,38370737,38371279,38373071,38373936,38376624	38346640,38349662,38350939,38354439,38355409,38360767,38364066,38364752,38366828,38369162,38370805,38371322,38373135,38374013,38377023	0.792793
right_lobe_of_liver_female_adult_53_years	chr22	30588022	30588036	30588035	-	High_confidence	3	4	8	0.228857	2.807355	chr22	30587924	30588011	SINE|MIR|MIRb	-	chr22	30584226	30588023	PES1|ENST00000477762.5	-	30584226,30584545,30587285,30588020	30584454,30584717,30587395,30588023	0.500000
right_lobe_of_liver_female_adult_53_years	chr7	87566224	87566227	87566224	-	RAMPAGE_only	2	4	9	0.257464	3.000000	chr7	87566185	87566265	LINE|CR1|L3	+	chr7	87503632	87601073	ABCB1|ENST00000622132.4	-	87503632,87505896,87509274,87515230,87516508,87519325,87520775,87531293,87536457,87539267,87541356,87544128,87544822,87545862,87549347,87549850,87550170,87550467,87550724,87553760,87561262,87566069,87566784,87570171,87585511,87595765,87600116,87600754	87504449,87506043,87509481,87515428,87516665,87519466,87520876,87531497,87536541,87539345,87541464,87544275,87544999,87546024,87549518,87550054,87550296,87550578,87550838,87553932,87561387,87566241,87566976,87570223,87585680,87595814,87600190,87601073	0.888889
right_lobe_of_liver_female_adult_53_years	chr4	2867850	2867851	2867850	+	High_confidence	10	10	15	0.429106	3.664498	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.933333
right_lobe_of_liver_female_adult_53_years	chr6	52500847	52500848	52500847	-	RAMPAGE_only	6	6	9	0.257464	2.750000	chr6	52500738	52500857	LINE|L2|L2a	+	chr6	52497401	52576915	TRAM2|ENST00000182527.3	-	52497401,52504590,52505598,52506031,52507552,52508233,52509527,52516005,52516627,52535782,52576795	52503270,52504754,52505742,52506136,52507623,52508318,52509586,52516122,52516737,52535846,52576915	0.888889
right_lobe_of_liver_female_adult_53_years	chr4	186265459	186265476	186265459	+	High_confidence	9	9	28	0.800999	4.286790	chr4	186265210	186265540	SINE|Alu|AluSx3	+	chr4	186265944	186288780	F11|ENST00000403665.6	+	186265944,186267135,186271608,186273070,186274115,186275786,186276230,186280011,186280222,186280473,186284091,186285637,186286414,186287683,186288452	186266295,186267191,186271771,186273177,186274275,186275896,186276390,186280121,186280385,186280580,186284260,186285813,186286510,186287823,186288780	0.821429
right_lobe_of_liver_female_adult_53_years	chrX	150777449	150777460	150777449	-	RAMPAGE_only	12	12	22	0.629356	4.186704	chrX	150776742	150777409	LTR|ERV1|MER4A	-	chrX	150768976	150814864	CD99L2|ENST00000634795.1	-	150768976,150770303,150771804,150776173,150777443,150793690,150795205,150795417,150814861	150769101,150770369,150771822,150776293,150777482,150793756,150795289,150795486,150814864	0.818182
right_lobe_of_liver_female_adult_53_years	chr10	32982549	32982592	32982550	+	High_confidence	41	55	124	3.547280	6.003805	chr10	32982518	32982768	SINE|Alu|AluSz6	-	chr10	32982540	33082102	ITGB1-DT|ENST00000414157.1	+	32982540,32985622,33081341	32982685,32985757,33082102	0.524194
right_lobe_of_liver_female_adult_53_years	chr16	29760765	29760814	29760809	+	RAMPAGE_only	7	7	29	0.829606	4.280226	chr16	29760474	29761018	LTR|ERVL-MaLR|MLT1G1	+	chr16	29778239	29781648	ZG16|NM_152338.3	+	29778239,29779259,29779504,29780103	29778306,29779321,29779637,29781648	0.896552
right_lobe_of_liver_female_adult_53_years	chr8	143018381	143018434	143018394	-	High_confidence	14	16	85	2.431603	5.462092	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.776471
right_lobe_of_liver_female_adult_53_years	chr5	67804651	67804685	67804651	+	RAMPAGE_only	4	4	12	0.343285	3.418296	chr5	67804566	67804778	LTR|ERVL|MLT2B1	+	chr5	67793219	67805238	AC112206.2|ENST00000515227.1	+	67793219,67804645	67793292,67805238	0.916667
right_lobe_of_liver_female_adult_53_years	chr21	33931417	33931450	33931417	+	High_confidence	4	4	18	0.514928	3.852169	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.666667
right_lobe_of_liver_female_adult_53_years	chr8	18063204	18063215	18063214	-	High_confidence	4	5	14	0.400499	3.546594	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.928571
right_lobe_of_liver_female_adult_53_years	chr12	126936694	126936718	126936694	-	RAMPAGE_only	3	3	8	0.228857	2.750000	chr12	126936467	126937286	LTR|ERV1|LTR28B	-	chr12	126915202	127060397	LINC02405|ENST00000512624.6	-	126915202,126922706,126923029,126975838,127000555,127031866,127060086	126915449,126922959,126923205,126975917,127000650,127032066,127060397	0.750000
right_lobe_of_liver_female_adult_53_years	chr19	45280047	45280048	45280047	+	High_confidence	9	9	13	0.371892	3.180833	chr19	45280066	45280316	SINE|Alu|AluJb	+	chr19	45280144	45287664	MARK4|ENST00000590897.1	+	45280144,45280574,45287446	45280483,45280734,45287664	1.000000
right_lobe_of_liver_female_adult_53_years	chr4	108744437	108744443	108744442	-	RAMPAGE_only	3	4	7	0.200250	2.584963	chr4	108744378	108744546	SINE|tRNA-RTE|MamSINE1	-	chr4	108742391	108762964	ETNPPL|ENST00000512646.5	-	108742391,108743788,108746398,108746761,108748004,108749237,108750935,108752894,108754619,108756417,108759748,108762820	108742612,108743856,108746529,108746851,108748159,108749463,108751018,108753011,108754710,108756492,108759908,108762964	0.714286
right_lobe_of_liver_female_adult_53_years	chr3	129439748	129439779	129439748	-	High_confidence	3	3	17	0.486321	3.852169	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129431265	129440007	MBD4|ENST00000503197.5	-	129431265,129432555,129433097,129433849,129434061,129436442,129437719,129439729	129431578,129432606,129433247,129433984,129434136,129437308,129437950,129440007	0.941176
right_lobe_of_liver_female_adult_53_years	chr17	6853886	6853939	6853928	+	High_confidence	21	21	104	2.975138	6.163187	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6895102	ALOX12P2|ENST00000576636.6	+	6853929,6854213,6892002,6894883,6895095	6854060,6854453,6892075,6895006,6895102	0.567308
right_lobe_of_liver_female_adult_53_years	chr5	122478855	122478881	122478867	-	High_confidence	57	60	271	7.752522	6.961534	chr5	122478731	122478846	LTR|ERV1|LTR7	-	chr5	122454175	122478900	STRG.33355.3	-	122454175,122478585	122454509,122478900	0.516605
right_lobe_of_liver_female_adult_53_years	chr18	77127950	77127984	77127983	-	High_confidence	2	2	7	0.200250	2.807355	chr18	77125932	77128521	LINE|L1|L1MD2	+	chr18	77016929	77127945	MBP|ENST00000581878.5	-	77016929,77066297,77105210,77127885	77017268,77066385,77105286,77127945	0.571429
right_lobe_of_liver_female_adult_53_years	chr13	57136263	57136264	57136263	-	High_confidence	18	18	21	0.600749	4.037401	chr13	57136164	57136508	LTR|ERVL-MaLR|MLT1I	+	chr13	57135113	57136411	STRG.71675.1	-	57135113	57136411	0.571429
right_lobe_of_liver_female_adult_53_years	chr8	116648808	116648905	116648865	-	RAMPAGE_only	9	13	63	1.802247	4.788489	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
right_lobe_of_liver_female_adult_53_years	chr10	44990368	44990399	44990398	+	High_confidence	9	9	15	0.429106	3.640224	chr10	44990231	44990788	LTR|ERV1|MER34A1	-	chr10	44990537	44991970	RASSF4|ENST00000493490.1	+	44990537,44990947,44991904	44990828,44991069,44991970	0.600000
right_lobe_of_liver_female_adult_53_years	chr10	59000353	59000391	59000364	+	High_confidence	3	3	14	0.400499	3.392747	chr10	59000079	59000419	LTR|ERVL-MaLR|MLT1H	+	chr10	58999625	59001543	LINC00844|ENST00000432535.1	+	58999625,59001228	58999787,59001543	0.714286
right_lobe_of_liver_female_adult_53_years	chr6	26956530	26956552	26956551	-	High_confidence	3	3	8	0.228857	2.807355	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.625000
right_lobe_of_liver_female_adult_53_years	chr6	131033791	131033795	131033791	-	RAMPAGE_only	13	14	23	0.657963	4.095795	chr6	131033291	131033999	LINE|L1|L1MB4	+	chr6	130956024	131015842	EPB41L2|ENST00000526983.1	-	130956024,131015280,131015818	130956499,131015333,131015842	0.565217
right_lobe_of_liver_female_adult_53_years	chr3	52518331	52518332	52518331	+	High_confidence	6	6	6	0.171643	2.584963	chr3	52518378	52518454	SINE|MIR|MIR3	+	chr3	52518800	52523476	STAB1|ENST00000481626.5	+	52518800,52519263,52519943,52520399,52520641,52521360,52521595,52521843,52522036,52522329,52522554,52522774,52523024,52523221,52523426	52518869,52519564,52520290,52520549,52521005,52521510,52521700,52521951,52522230,52522474,52522688,52522940,52523134,52523341,52523476	1.000000
right_lobe_of_liver_female_adult_53_years	chr10	133369930	133370021	133369997	-	RAMPAGE_only	21	39	174	4.977634	6.109574	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.994253
right_lobe_of_liver_female_adult_53_years	chrX	124984280	124984310	124984301	-	High_confidence	42	49	161	4.605742	6.062301	chrX	124984283	124984539	DNA|hAT-Tip100|MamTip2	-	chrX	124736958	124983397	STRG.97967.1	-	124736958,124894295,124895980,124963536,124983294	124737197,124894352,124896241,124963817,124983397	0.894410
right_lobe_of_liver_female_adult_53_years	chr12	109053947	109053961	109053956	-	High_confidence	24	28	87	2.488817	4.990511	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.988506
right_lobe_of_liver_female_adult_53_years	chr11	64242388	64242547	64242546	+	High_confidence	65	73	271	7.752522	6.172008	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.985240
right_lobe_of_liver_female_adult_53_years	chr11	58939478	58939512	58939483	+	High_confidence	742	745	1961	56.098510	7.152404	chr11	58939456	58939812	LTR|ERV1|LOR1-int	+	chr11	58939483	58954821	GLYATL1|ENST00000532726.5	+	58939483,58943542,58947045,58947857,58954769	58939650,58943666,58947165,58947965,58954821	0.716471
right_lobe_of_liver_female_adult_53_years	chr3	9973632	9973707	9973632	-	RAMPAGE_only	4	4	23	0.657963	4.095795	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.956522
right_lobe_of_liver_female_adult_53_years	chr5	115739043	115739057	115739043	+	High_confidence	15	18	45	1.287319	4.998871	chr5	115738242	115739340	LTR|ERV1|MER57A-int	-	chr5	115738977	115756527	AC008549.1|ENST00000512900.2	+	115738977,115739359,115755390	115739114,115739507,115756527	0.911111
right_lobe_of_liver_female_adult_53_years	chr2	38408711	38408781	38408716	+	High_confidence	13	13	93	2.660460	5.220065	chr2	38408662	38408966	SINE|Alu|AluSz	-	chr2	38408704	38412547	STRG.10981.1	+	38408704,38409092,38411790	38408978,38409183,38412547	0.935484
right_lobe_of_liver_female_adult_53_years	chr6	2999183	2999186	2999185	-	High_confidence	16	18	25	0.715177	3.201546	chr6	2999098	2999242	LINE|L1|L1MD2	-	chr6	2989725	2999134	AL133351.1|ENST00000429319.1	-	2989725,2999012	2990011,2999134	0.920000
right_lobe_of_liver_female_adult_53_years	chr4	69051209	69051230	69051229	+	High_confidence	4	5	8	0.228857	2.750000	chr4	69050859	69051337	LTR|ERV1|LTR2B	+	chr4	69051254	69063975	STRG.26483.1	+	69051254,69063824	69051602,69063975	0.750000
right_lobe_of_liver_female_adult_53_years	chr7	99670727	99670797	99670773	-	RAMPAGE_only	5	5	35	1.001248	4.574401	chr7	99668375	99671117	DNA|hAT-Charlie|Charlie12	+	chr7	99648197	99679953	STRG.44969.11	-	99648197,99650072,99652552,99660498,99662815,99663967,99665165,99666600,99666951,99674532,99676114,99679825	99648400,99650232,99652779,99660659,99662882,99664095,99665314,99666689,99672679,99674585,99676208,99679953	0.942857
right_lobe_of_liver_female_adult_53_years	chr17	58535476	58535509	58535508	-	High_confidence	21	21	80	2.288567	5.843470	chr17	58535378	58535602	LINE|CR1|L3	-	chr17	58522050	58535614	STRG.84391.12	-	58522050,58525077,58525694,58526219,58535437	58522101,58525201,58525781,58526313,58535614	0.562500
right_lobe_of_liver_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	11	13	13	0.371892	3.085055	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
right_lobe_of_liver_female_adult_53_years	chr3	186990718	186990738	186990718	+	RAMPAGE_only	24	26	59	1.687819	5.390786	chr3	186990703	186990831	SINE|Alu|AluSq2	+	chr3	186986315	187042998	ST6GAL1|ENST00000448408.5	+	186986315,186996547,187038741,187042653	186986717,186996673,187038873,187042998	0.677966
right_lobe_of_liver_female_adult_53_years	chr19	10379686	10379688	10379687	-	High_confidence	5	9	13	0.371892	3.188722	chr19	10379599	10379809	SINE|MIR|MIRb	+	chr19	10368328	10380510	TYK2|ENST00000530829.1	-	10368328,10369756,10378213,10379614,10380379	10368418,10369877,10378426,10379779,10380510	0.923077
right_lobe_of_liver_female_adult_53_years	chr3	124901368	124901377	124901376	-	High_confidence	20	20	48	1.373140	4.969274	chr3	124901109	124901410	SINE|Alu|AluSz	+	chr3	124841420	124901418	ITGB5|ENST00000608657.5	-	124841420,124848308,124859241,124873445,124901265	124841551,124848558,124859446,124873531,124901418	0.625000
right_lobe_of_liver_female_adult_53_years	chr9	39809852	39809859	39809858	-	High_confidence	13	13	26	0.743784	4.392747	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807380	39810058	GLIDR|ENST00000618092.2	-	39807380,39809730	39809633,39810058	0.500000
right_lobe_of_liver_female_adult_53_years	chr4	99139077	99139087	99139077	-	RAMPAGE_only	15	16	23	0.657963	4.262692	chr4	99138541	99139050	LINE|L1|L1ME3C	-	chr4	99124363	99136537	ADH4|ENST00000509471.5	-	99124363,99126593,99131503,99136465	99124466,99126732,99131764,99136537	0.652174
right_lobe_of_liver_female_adult_53_years	chr10	133514285	133514314	133514304	-	RAMPAGE_only	26	28	88	2.517424	5.892664	chr10	133514136	133514490	LTR|ERVL-MaLR|THE1B	-	chr10	133471925	133473580	STRG.60846.1	-	133471925	133473580	0.704545
right_lobe_of_liver_female_adult_53_years	chr1	196741534	196741537	196741534	+	RAMPAGE_only	2	3	7	0.200250	2.521641	chr1	196741215	196741581	LTR|ERVL-MaLR|THE1D	-	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	1.000000
right_lobe_of_liver_female_adult_53_years	chr10	5968894	5969001	5968907	-	RAMPAGE_only	10	10	90	2.574638	5.788991	chr10	5968507	5969013	LINE|L1|L1MCc	-	chr10	5952370	5977611	IL15RA|NM_001256765.1	-	5952370,5956378,5959753,5960366,5963742,5966144,5968775,5977404	5953206,5956454,5959786,5960567,5963841,5966339,5968928,5977611	0.500000
right_lobe_of_liver_female_adult_53_years	chr9	113395431	113395432	113395431	-	RAMPAGE_only	34	34	38	1.087070	4.885129	chr9	113395423	113395553	DNA|TcMar-Tigger|Tigger19b	+	chr9	113392131	113397402	ALAD|ENST00000452726.1	-	113392131,113393446,113397045	113392169,113393634,113397402	0.631579
right_lobe_of_liver_female_adult_53_years	chr22	17579752	17579795	17579771	+	RAMPAGE_only	2	2	12	0.343285	3.095795	chr22	17579710	17579844	SINE|MIR|MIRb	-	chr22	17569706	17590994	STRG.93478.3	+	17569706,17569923,17579744,17581036,17581357,17582562,17583415,17587135,17587924,17589589,17590094	17569796,17569986,17580857,17581159,17581413,17582653,17583534,17587301,17588079,17589665,17590994	0.916667
right_lobe_of_liver_female_adult_53_years	chr5	140596680	140596763	140596762	+	High_confidence	48	49	105	3.003745	5.018854	chr5	140596528	140596989	LTR|ERVL|MER70A	+	chr5	140596565	140597195	STRG.34075.1	+	140596565	140597195	0.657143
right_lobe_of_liver_female_adult_53_years	chr17	77127869	77127873	77127872	+	High_confidence	5	5	9	0.257464	2.947703	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.666667
right_lobe_of_liver_female_adult_53_years	chr4	113434318	113434333	113434318	-	High_confidence	2	2	6	0.171643	2.584963	chr4	113434172	113434469	LTR|ERV1|MER110	-	chr4	113419237	113434261	STRG.27809.1	-	113419237,113420330,113430606,113434221	113419361,113420483,113430854,113434261	1.000000
right_lobe_of_liver_female_adult_53_years	chr9	63326213	63326225	63326224	-	High_confidence	2	2	6	0.171643	2.584963	chr9	63326153	63326449	SINE|Alu|AluSq2	-	chr9	63299380	63326959	STRG.53501.2	-	63299380,63309141,63326729	63299620,63309312,63326959	0.833333
right_lobe_of_liver_female_adult_53_years	chr17	50271485	50271488	50271485	+	High_confidence	88	88	137	3.919172	5.621129	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	0.992701
right_lobe_of_liver_female_adult_53_years	chr20	8600707	8600749	8600725	+	High_confidence	3	3	20	0.572142	3.281373	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600725	8788523	PLCB1|ENST00000626966.2	+	8600725,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8600781,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788523	0.950000
right_lobe_of_liver_female_adult_53_years	chr17	56912343	56912347	56912343	-	RAMPAGE_only	2	2	6	0.171643	2.584963	chr17	56912295	56912400	SINE|MIR|MIR3	-	chr17	56891582	56913472	TRIM25|ENST00000572021.5	-	56891582,56895342,56895520,56895925,56899114,56901418,56904254,56908467,56912104,56913391	56892229,56895441,56895604,56895952,56899180,56901578,56904488,56908563,56912165,56913472	0.833333
right_lobe_of_liver_female_adult_53_years	chr14	104767168	104767207	104767206	+	RAMPAGE_only	14	16	52	1.487569	5.084190	chr14	104766824	104767423	LTR|ERV1|LTR71B	-	chr14	104753170	104768494	SIVA1|ENST00000553819.5	+	104753170,104755629,104756603,104766789,104767863,104768391	104753319,104755824,104756760,104766897,104768007,104768494	0.634615
right_lobe_of_liver_female_adult_53_years	chrX	106716700	106716704	106716703	+	RAMPAGE_only	40	47	76	2.174139	4.355671	chrX	106716671	106716865	LINE|L2|L2c	-	chrX	106726663	106796993	RNF128|ENST00000255499.2	+	106726663,106772912,106785064,106787917,106790185,106791065,106795579	106727397,106773160,106785136,106788000,106790282,106791234,106796993	0.934211
right_lobe_of_liver_female_adult_53_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	34	34	34	0.972641	3.124084	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80108986	80138358	STRG.79042.7	+	80108986,80120327,80121711,80122699,80131179,80137479	80111559,80120498,80121820,80122800,80131293,80138358	1.000000
right_lobe_of_liver_female_adult_53_years	chr12	95995482	95995484	95995483	-	High_confidence	4	6	9	0.257464	2.750000	chr12	95995363	95995511	SINE|MIR|MIRb	+	chr12	95990504	95995200	HAL|ENST00000546579.1	-	95990504,95992679,95993450,95993771,95993925,95994089,95994797,95994932	95990532,95992805,95993488,95993838,95993998,95994164,95994819,95995200	0.777778
right_lobe_of_liver_female_adult_53_years	chr16	48352025	48352115	48352091	+	RAMPAGE_only	46	46	126	3.604494	6.060225	chr16	48352051	48352235	DNA|hAT-Charlie|MER5A	+	chr16	48244387	48362737	STRG.81026.1	+	48244387,48252130,48256609,48258617,48261423,48262777,48270015,48277337,48296014,48299661,48303171,48334215,48347506,48348099,48351580,48354118,48361476,48361853	48244621,48252365,48256741,48258740,48261587,48262872,48270274,48277479,48296165,48299788,48303305,48334358,48347714,48348290,48354086,48356710,48361759,48362737	1.000000
right_lobe_of_liver_female_adult_53_years	chr13	27445105	27445108	27445107	-	RAMPAGE_only	18	34	40	1.144284	4.875146	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.975000
right_lobe_of_liver_female_adult_53_years	chr22	38192140	38192151	38192150	-	RAMPAGE_only	5	7	14	0.400499	3.324863	chr22	38191851	38192921	LINE|L2|L2c	-	chr22	38140134	38181830	PLA2G6|ENST00000436218.5	-	38140134,38145437,38169217,38181783	38140169,38145653,38169471,38181830	0.642857
right_lobe_of_liver_female_adult_53_years	chr16	72013655	72013689	72013688	+	High_confidence	7	9	26	0.743784	4.026987	chr16	72013583	72013723	DNA|hAT-Charlie|MER5B	+	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.653846
right_lobe_of_liver_female_adult_53_years	chr2	20592717	20592742	20592717	-	High_confidence	4	4	11	0.314678	2.921928	chr2	20592550	20592962	LTR|ERVL-MaLR|MLT1C	-	chr2	20590774	20592548	HS1BP3-IT1|NR_046836.1	-	20590774,20592421	20591247,20592548	0.909091
right_lobe_of_liver_female_adult_53_years	chr16	4015655	4015673	4015668	-	High_confidence	14	14	63	1.802247	4.585527	chr16	4015652	4015685	SINE|MIR|MIR	+	chr16	3963152	4015669	STRG.79984.2	-	3963152,3974668,3977481,3979115,3983231,3988993,3992145,3993348,4007367,4015561	3966966,3974710,3977630,3979275,3983440,3989096,3992363,3993510,4007558,4015669	0.920635
right_lobe_of_liver_female_adult_53_years	chr12	57439040	57439074	57439070	-	RAMPAGE_only	6	7	22	0.629356	4.121928	chr12	57438933	57439147	DNA|hAT-Blackjack|MER63A	+	chr12	57253763	57431005	R3HDM2|ENST00000347140.7	-	57253763,57255989,57256413,57257989,57258889,57266730,57268302,57268921,57269322,57269751,57280357,57283823,57288856,57289008,57295398,57296410,57297327,57298089,57299351,57300094,57303175,57310263,57395748,57430719	57255113,57256074,57256511,57258137,57259059,57266831,57268457,57269082,57269449,57269994,57280530,57284056,57288910,57289040,57295507,57296551,57297387,57298168,57299478,57300181,57303217,57310463,57395818,57431005	0.590909
right_lobe_of_liver_female_adult_53_years	chr7	43881912	43881956	43881912	-	High_confidence	5	5	23	0.657963	4.175736	chr7	43881785	43881943	LINE|L2|L2	+	chr7	43878943	43881896	URGCP|ENST00000467410.1	-	43878943,43881658	43879260,43881896	0.608696
right_lobe_of_liver_female_adult_53_years	chr2	71423188	71423275	71423274	+	RAMPAGE_only	21	22	64	1.830854	5.248157	chr2	71423244	71423287	DNA|hAT-Ac|OldhAT1	+	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.968750
right_lobe_of_liver_female_adult_53_years	chr12	124831787	124831793	124831792	-	RAMPAGE_only	5	6	10	0.286071	3.169925	chr12	124831781	124832235	LINE|L1|L1MC3	+	chr12	124785819	124817707	SCARB1|ENST00000544327.1	-	124785819,124787405,124795194,124800123,124807760,124810173,124811869,124814201,124814972,124817549	124786503,124787457,124795268,124800242,124807927,124810289,124811965,124814405,124815114,124817707	0.800000
right_lobe_of_liver_female_adult_53_years	chr1	65218864	65218897	65218896	+	RAMPAGE_only	18	27	54	1.544783	4.489356	chr1	65218928	65219138	LINE|L1|L1M5	+	chr1	65165931	65226429	AK4|ENST00000479060.1	+	65165931,65190709,65218753,65224751,65226062	65166019,65190829,65218926,65224870,65226429	0.944444
right_lobe_of_liver_female_adult_53_years	chr12	31853599	31853600	31853599	-	High_confidence	19	19	19	0.543535	4.247928	chr12	31853506	31853732	DNA|hAT-Charlie|Charlie2a	+	chr12	31853020	31853407	AC023050.2|ENST00000544968.1	-	31853020	31853407	0.789474
right_lobe_of_liver_female_adult_53_years	chr5	81392900	81392919	81392900	-	RAMPAGE_only	3	4	11	0.314678	3.459432	chr5	81392763	81393079	LTR|ERVL-MaLR|MLT1A	-	chr5	81330004	81394143	ACOT12|ENST00000307624.7	-	81330004,81330813,81332476,81335767,81342671,81343817,81344159,81344890,81345884,81347773,81359902,81363787,81371749,81385756,81393987	81330543,81330940,81332605,81335901,81342755,81343881,81344215,81345041,81346004,81347930,81360038,81363889,81371810,81385826,81394143	0.818182
right_lobe_of_liver_female_adult_53_years	chr17	41871819	41871820	41871819	-	RAMPAGE_only	4	4	6	0.171643	2.584963	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	1.000000
right_lobe_of_liver_female_adult_53_years	chr4	73383590	73383620	73383619	+	RAMPAGE_only	4	4	17	0.486321	3.690117	chr4	73382825	73383876	LINE|L1|L1MC1	-	chr4	73397113	73409457	ALB|ENST00000441319.5	+	73397113,73404368,73405115,73406628,73408593,73409354	73397160,73404406,73405173,73406761,73408805,73409457	0.941176
right_lobe_of_liver_female_adult_53_years	chr7	131072176	131072189	131072176	-	RAMPAGE_only	6	6	10	0.286071	2.646439	chr7	131071956	131072406	LTR|ERV1|MER41B	+	chr7	130944168	131081013	LINC-PINT|ENST00000646587.1	-	130944168,130984052,131052424,131080865	130945835,130984109,131052555,131081013	0.700000
right_lobe_of_liver_female_adult_53_years	chrX	74000299	74000300	74000299	+	RAMPAGE_only	8	8	12	0.343285	3.095795	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.916667
right_lobe_of_liver_female_adult_53_years	chr6	136225617	136225623	136225622	-	High_confidence	68	107	186	5.320919	6.847142	chr6	136225478	136225763	LTR|ERVL-MaLR|THE1B	-	chr6	136064312	136225609	STRG.39689.2	-	136064312,136070223,136071194,136094027,136110995,136117069,136162251,136225537	136064634,136070331,136071295,136096288,136111101,136117172,136162348,136225609	0.634409
right_lobe_of_liver_female_adult_53_years	chr16	87841827	87841869	87841868	+	High_confidence	26	43	82	2.345782	5.414682	chr16	87841754	87841942	LTR|ERVL-MaLR|MLT1D	-	chr16	87841908	87853328	STRG.81910.1	+	87841908	87853328	0.951220
right_lobe_of_liver_female_adult_53_years	chr9	90992088	90992092	90992088	-	High_confidence	30	31	54	1.544783	4.611670	chr9	90991840	90992378	LTR|ERVL|MER68	-	chr9	90991675	90992149	STRG.54359.1	-	90991675	90992149	0.685185
right_lobe_of_liver_female_adult_53_years	chr14	81192654	81192670	81192654	-	RAMPAGE_only	5	5	10	0.286071	3.321928	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	1.000000
right_lobe_of_liver_female_adult_53_years	chr17	77390290	77390295	77390290	+	RAMPAGE_only	10	10	25	0.715177	3.970176	chr17	77390212	77390366	SINE|Alu|AluYc	+	chr17	77380122	77402483	SEPT9|ENST00000589140.1	+	77380122,77402058	77380249,77402483	0.640000
right_lobe_of_liver_female_adult_53_years	chr9	92536625	92536704	92536674	-	High_confidence	143	146	613	17.536148	6.197550	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.962480
right_lobe_of_liver_female_adult_53_years	chr12	113186247	113186251	113186247	+	High_confidence	3	3	9	0.257464	3.000000	chr12	113186126	113186312	SINE|MIR|MIRb	+	chr12	113185541	113192361	RITA1|ENST00000552495.1	+	113185541,113186682,113191309	113186021,113187048,113192361	0.888889
right_lobe_of_liver_female_adult_53_years	chr21	25606450	25606463	25606456	-	RAMPAGE_only	4	6	15	0.429106	3.378783	chr21	25606381	25606463	LINE|RTE-BovB|MamRTE1	+	chr21	25592811	25607484	MRPL39|ENST00000419219.1	-	25592811,25593892,25597301,25599798,25601367,25603795,25606448,25607402	25592965,25593958,25597414,25599836,25601467,25603935,25606655,25607484	0.733333
right_lobe_of_liver_female_adult_53_years	chr9	114327236	114327267	114327239	+	RAMPAGE_only	891	931	2966	84.848639	5.826354	chr9	114327052	114327433	LTR|ERVL-MaLR|MSTA	+	chr9	114329788	114333256	ORM2|NM_000608.2	+	114329788,114330433,114330791,114331566,114331825,114333068	114330018,114330576,114330862,114331674,114331929,114333256	0.986514
right_lobe_of_liver_female_adult_53_years	chr7	90718119	90718124	90718123	+	RAMPAGE_only	4	7	10	0.286071	2.947703	chr7	90718060	90718155	DNA|hAT-Charlie|MER20B	+	chr7	90709861	90955793	CDK14|ENST00000431029.5	+	90709861,90726566,90790572,90863174,90899290,90917600,90955696	90709957,90726812,90790652,90863269,90899353,90917724,90955793	0.800000
right_lobe_of_liver_female_adult_53_years	chr1	59515627	59515654	59515653	+	High_confidence	129	130	331	9.468948	6.875222	chr1	59515522	59515871	LTR|ERVL-MaLR|THE1A	+	chr1	59515638	59763317	STRG.2341.6	+	59515638,59554123,59607802,59625987,59638227,59660218,59667282,59674038,59757930,59762502	59515795,59554227,59607910,59626049,59638375,59660293,59667403,59674133,59757992,59763317	0.773414
right_lobe_of_liver_female_adult_53_years	chr5	34502125	34502142	34502131	+	High_confidence	4	4	15	0.429106	3.773557	chr5	34501877	34502229	LTR|ERVL|LTR33	+	chr5	34502192	34503500	STRG.29895.1	+	34502192,34502936	34502466,34503500	0.933333
right_lobe_of_liver_female_adult_53_years	chr10	35449689	35449715	35449689	+	RAMPAGE_only	5	5	11	0.314678	3.095795	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.545455
right_lobe_of_liver_female_adult_53_years	chr18	24118149	24118224	24118214	+	RAMPAGE_only	8	12	49	1.401748	4.629717	chr18	24118261	24118370	DNA|TcMar-Tigger|Tigger9a	+	chr18	24113352	24135610	TTC39C|NM_001292030.1	+	24113352,24114553,24118124,24123833,24125426,24128885,24130312,24131881,24132484	24113665,24114647,24118232,24123943,24125550,24128983,24130417,24131920,24135610	1.000000
right_lobe_of_liver_female_adult_53_years	chrX	48683361	48683363	48683361	+	High_confidence	14	26	26	0.743784	3.625815	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.923077
right_lobe_of_liver_female_adult_53_years	chr14	88097063	88097173	88097138	+	RAMPAGE_only	5	6	36	1.029855	3.653025	chr14	88097067	88097617	LTR|ERVL-MaLR|MLT1E3	+	chr14	88024613	88107755	STRG.75553.1	+	88024613,88044614,88079103,88084036,88090022	88037439,88044848,88079368,88087037,88107755	0.916667
right_lobe_of_liver_female_adult_53_years	chr1	196715620	196715724	196715659	+	RAMPAGE_only	52	54	611	17.478934	6.773030	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.980360
right_lobe_of_liver_female_adult_53_years	chr19	49928465	49928482	49928465	+	High_confidence	5	5	21	0.600749	3.821928	chr19	49928235	49928532	SINE|Alu|AluY	+	chr19	49928701	49933298	ATF5|ENST00000595125.5	+	49928701,49929242,49930731,49932421	49929006,49929400,49931028,49933298	0.809524
right_lobe_of_liver_female_adult_53_years	chr1	86806006	86806022	86806021	-	High_confidence	3	3	7	0.200250	2.521641	chr1	86802314	86806927	LTR|ERV1|HERV9NC-int	-	chr1	86802367	86805991	STRG.3428.1	-	86802367,86805789	86802558,86805991	0.857143
right_lobe_of_liver_female_adult_53_years	chr7	131108707	131108708	131108707	-	RAMPAGE_only	28	28	30	0.858213	4.521641	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944159	131109916	LINC-PINT|NR_109854.1	-	130944159,130945719,130984052,131052424,131107719,131109736	130944889,130945791,130984109,131052555,131108803,131109916	0.933333
right_lobe_of_liver_female_adult_53_years	chr14	57274808	57274835	57274832	+	RAMPAGE_only	6	8	22	0.629356	4.095795	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.954545
right_lobe_of_liver_female_adult_53_years	chr1	45522855	45522890	45522858	-	High_confidence	483	483	1034	29.579735	6.694916	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.988395
right_lobe_of_liver_female_adult_53_years	chr1	56952073	56952167	56952073	-	RAMPAGE_only	64	68	310	8.868199	5.980674	chr1	56951879	56952044	SINE|MIR|MIRb	-	chr1	56929209	56966015	C8B|ENST00000371237.8	-	56929209,56931809,56933334,56940848,56943695,56945820,56949554,56952047,56954685,56956768,56960019,56965856	56929558,56931878,56933488,56941012,56943824,56946061,56949752,56952180,56954827,56956910,56960176,56966015	0.987097
right_lobe_of_liver_female_adult_53_years	chr7	99410020	99410050	99410046	+	High_confidence	2	3	11	0.314678	2.921928	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.636364
right_lobe_of_liver_female_adult_53_years	chr15	80059918	80059933	80059918	+	High_confidence	135	158	352	10.069697	5.254434	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.965909
right_lobe_of_liver_female_adult_53_years	chr17	69248793	69248839	69248838	-	High_confidence	3	3	13	0.371892	3.251629	chr17	69248697	69249025	SINE|Alu|AluJb	-	chr17	69247375	69249141	ABCA5|ENST00000586601.1	-	69247375,69248261	69247644,69249141	0.923077
right_lobe_of_liver_female_adult_53_years	chr1	54199996	54200023	54199996	-	High_confidence	25	29	89	2.546031	5.510352	chr1	54199790	54199971	SINE|MIR|MIRb	-	chr1	54172335	54200010	CYB5RL|ENST00000421415.5	-	54172335,54179148,54184160,54187651,54195418,54196368,54199975	54174822,54179352,54184265,54187739,54195715,54196491,54200010	0.932584
right_lobe_of_liver_female_adult_53_years	chr5	172854666	172854703	172854702	+	RAMPAGE_only	9	9	41	1.172891	5.211211	chr5	172854401	172854991	DNA|TcMar-Tigger|MER6A	+	chr5	172834274	172952685	ERGIC1|ENST00000393784.7	+	172834274,172888698,172897001,172909666,172914713,172924004,172926508,172932435,172935187,172950708	172834433,172888760,172897074,172909761,172914838,172924109,172926569,172932536,172935310,172952685	0.804878
right_lobe_of_liver_female_adult_53_years	chr12	109112881	109112928	109112927	+	RAMPAGE_only	8	8	36	1.029855	4.707715	chr12	109112836	109113146	DNA|hAT-Charlie|MER58B	-	chr12	109111217	109125594	AC007637.1|ENST00000541704.2	+	109111217,109113094,109125260	109111472,109113415,109125594	0.750000
right_lobe_of_liver_female_adult_53_years	chr12	118139096	118139097	118139096	+	High_confidence	19	19	19	0.543535	3.787144	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	58724479	58724506	58724505	-	High_confidence	6	6	21	0.600749	3.921928	chr11	58724345	58724536	LINE|CR1|L3	-	chr11	58708757	58724496	GLYAT|ENST00000611865.4	-	58708757,58710589,58712759,58715315,58724415	58710168,58710761,58712886,58715423,58724496	0.809524
right_lobe_of_liver_female_adult_53_years	chr5	109383446	109383460	109383448	-	High_confidence	8	11	21	0.600749	4.037401	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.904762
right_lobe_of_liver_female_adult_53_years	chr9	128684466	128684485	128684466	-	High_confidence	6	6	26	0.743784	4.469670	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683783	128684337	STRG.55992.1	-	128683783	128684337	0.576923
right_lobe_of_liver_female_adult_53_years	chr5	34244692	34244695	34244692	-	High_confidence	3	3	9	0.257464	3.169925	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244796	STRG.29963.4	-	34175821,34179012,34182679,34218294,34239374,34244615	34175957,34179097,34182867,34218450,34239448,34244796	0.777778
right_lobe_of_liver_female_adult_53_years	chr17	36002014	36002115	36002113	-	High_confidence	20	27	71	2.031104	5.501860	chr17	36001935	36002541	LTR|ERV1|MER50	-	chr17	35997581	36002038	CCL15|NM_032965.5	-	35997581,35998279,35998865,36001416	35997860,35998391,35998925,36002038	1.000000
right_lobe_of_liver_female_adult_53_years	chr3	28291847	28291848	28291847	+	High_confidence	20	20	20	0.572142	2.941446	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.700000
right_lobe_of_liver_female_adult_53_years	chr12	6542366	6542382	6542381	-	RAMPAGE_only	5	5	11	0.314678	2.921928	chr12	6542251	6542331	DNA|TcMar-Tc2|Kanga11a	-	chr12	6539606	6549113	IFFO1|ENST00000396830.2	-	6539606,6541511,6548064,6548424,6548667	6540588,6541642,6548160,6548545,6549113	0.636364
right_lobe_of_liver_female_adult_53_years	chr7	45690595	45690596	45690595	+	High_confidence	679	681	950	27.176739	7.143836	chr7	45690403	45690618	LTR|ERVL|LTR33	-	chr7	45690608	45723116	STRG.42790.2	+	45690608,45703375,45703599,45704517,45708349,45710527,45713692	45692149,45703492,45703746,45704616,45708464,45710652,45723116	0.952632
right_lobe_of_liver_female_adult_53_years	chr2	27501222	27501223	27501222	+	RAMPAGE_only	12	12	12	0.343285	3.418296	chr2	27501264	27501351	LINE|CR1|CR1_Mam	+	chr2	27497267	27527249	STRG.10587.2	+	27497267,27497561,27498254,27498723,27499141,27499396,27501134,27503513,27505717,27506480,27507234,27507680,27507976,27508167,27518787,27522459,27523268	27497399,27497630,27498323,27498797,27499208,27499450,27501229,27503619,27505836,27506885,27507311,27507777,27508074,27508251,27518937,27522594,27527249	1.000000
right_lobe_of_liver_female_adult_53_years	chr20	40004279	40004350	40004317	+	High_confidence	183	190	506	14.475189	7.431150	chr20	40004094	40004398	LINE|L1|L1PA13	-	chr20	40004306	40044766	STRG.91252.1	+	40004306,40006262,40030724,40034160,40043471	40004491,40008459,40030894,40034279,40044766	0.841897
right_lobe_of_liver_female_adult_53_years	chr13	21041271	21041272	21041271	-	RAMPAGE_only	9	9	9	0.257464	3.169925	chr13	21040977	21041271	SINE|Alu|AluY	-	chr13	20723547	20723943	STRG.70405.1	-	20723547	20723943	1.000000
right_lobe_of_liver_female_adult_53_years	chr17	56904348	56904351	56904348	-	High_confidence	2	3	7	0.200250	2.584963	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56895769	56904343	TRIM25|ENST00000570473.5	-	56895769,56899114,56901418,56904254	56895952,56899180,56901578,56904343	0.857143
right_lobe_of_liver_female_adult_53_years	chr19	3062922	3062978	3062922	-	High_confidence	24	27	102	2.917924	5.487627	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.980392
right_lobe_of_liver_female_adult_53_years	chr14	21024286	21024312	21024306	+	High_confidence	8	12	43	1.230105	4.668356	chr14	21024322	21024505	SINE|MIR|MIR3	+	chr14	21024295	21029271	AL161668.4|ENST00000532213.2	+	21024295,21028445,21028940	21024344,21028534,21029271	0.720930
right_lobe_of_liver_female_adult_53_years	chr1	111473793	111473814	111473798	+	High_confidence	2	3	8	0.228857	2.807355	chr1	111473535	111473833	SINE|Alu|AluYm1	+	chr1	111473791	111478512	C1orf162|ENST00000343534.9	+	111473791,111476017,111476797,111477333,111477650,111477982	111474030,111476065,111476867,111477428,111477775,111478512	0.750000
right_lobe_of_liver_female_adult_53_years	chr21	44483014	44483030	44483014	+	High_confidence	27	27	73	2.088318	4.888495	chr21	44483021	44483326	SINE|Alu|AluSz	+	chr21	44482993	44483331	STRG.93290.1	+	44482993	44483331	0.547945
right_lobe_of_liver_female_adult_53_years	chr17	58535623	58535642	58535641	-	High_confidence	3	3	8	0.228857	3.000000	chr17	58535378	58535602	LINE|CR1|L3	-	chr17	58522050	58535614	STRG.84391.12	-	58522050,58525077,58525694,58526219,58535437	58522101,58525201,58525781,58526313,58535614	0.625000
right_lobe_of_liver_female_adult_53_years	chr8	17895504	17895524	17895511	-	High_confidence	29834	37215	103457	2959.604066	7.538062	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.929082
right_lobe_of_liver_female_adult_53_years	chr7	80374541	80374561	80374560	-	High_confidence	9	10	15	0.429106	3.456565	chr7	80374347	80374986	LINE|RTE-X|L4_B_Mam	+	chr7	80371920	80374469	AC004862.1|ENST00000605580.1	-	80371920,80373811,80374340	80372294,80373990,80374469	1.000000
right_lobe_of_liver_female_adult_53_years	chrX	19349952	19349982	19349952	+	RAMPAGE_only	5	5	14	0.400499	3.235926	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19352828	19355445	PDHA1|ENST00000479146.1	+	19352828,19354490,19355348	19353173,19354583,19355445	0.785714
right_lobe_of_liver_female_adult_53_years	chr3	57267742	57267773	57267772	+	RAMPAGE_only	13	14	33	0.944034	3.844313	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.909091
right_lobe_of_liver_female_adult_53_years	chr12	53464758	53464775	53464774	+	RAMPAGE_only	3	3	11	0.314678	2.721928	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.727273
right_lobe_of_liver_female_adult_53_years	chr11	134467260	134467265	134467264	+	High_confidence	47	47	101	2.889316	5.068798	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134467278	134471292	STRG.65768.1	+	134467278,134467864,134469486	134467615,134467987,134471292	0.930693
right_lobe_of_liver_female_adult_53_years	chr13	80075002	80075028	80075002	-	High_confidence	7	7	21	0.600749	3.446439	chr13	80074227	80075072	LTR|ERV1|LTR1A2	+	chr13	80070279	80075131	STRG.72043.1	-	80070279,80073388,80074478	80070437,80073523,80075131	0.904762
right_lobe_of_liver_female_adult_53_years	chr14	55671795	55671857	55671856	+	High_confidence	13	13	71	2.031104	5.325390	chr14	55671902	55672073	DNA|hAT-Charlie|MER5A	+	chr14	55671861	55674304	KTN1|ENST00000555506.1	+	55671861,55672629,55672928	55671877,55672701,55674304	0.535211
right_lobe_of_liver_female_adult_53_years	chr1	179856097	179856126	179856122	-	RAMPAGE_only	2	2	10	0.286071	2.947703	chr1	179855896	179856189	SINE|Alu|AluSz	+	chr1	179843930	179877772	STRG.6740.3	-	179843930,179847534,179850844,179852631,179856057,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179877373,179877772	0.900000
right_lobe_of_liver_female_adult_53_years	chr7	101308269	101308325	101308324	+	High_confidence	30	31	174	4.977634	6.264742	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.908046
right_lobe_of_liver_female_adult_53_years	chr8	17893174	17893175	17893174	-	RAMPAGE_only	10	11	12	0.343285	2.732159	chr8	17892918	17893218	SINE|Alu|AluSz6	+	chr8	17864583	17891809	FGL1|ENST00000518650.5	-	17864583,17868547,17868915,17874018,17874361,17881998,17885491,17891680	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891809	0.583333
right_lobe_of_liver_female_adult_53_years	chr1	145687867	145687892	145687886	-	RAMPAGE_only	4	4	12	0.343285	3.459432	chr1	145687814	145687888	DNA|hAT-Ac|OldhAT1	-	chr1	145670984	145691802	PDZK1|ENST00000344770.6	-	145670984,145672729,145673656,145678448,145680911,145682499,145686476,145687811,145691731	145671489,145673020,145673881,145678645,145681107,145682636,145686726,145688023,145691802	0.916667
right_lobe_of_liver_female_adult_53_years	chr4	89009224	89009240	89009224	-	RAMPAGE_only	4	4	13	0.371892	2.688722	chr4	89009158	89009447	LTR|ERV1|LTR24	+	chr4	88767982	89111398	FAM13A|ENST00000502459.5	-	88767982,88781164,88787752,88790585,88805010,88851019,88906378,88938087,88990972,89008950,89020459,89029459,89111041	88768059,88781351,88787932,88790627,88805052,88851183,88906462,88938241,88991150,89009078,89020669,89029649,89111398	0.846154
right_lobe_of_liver_female_adult_53_years	chr5	41208980	41208981	41208980	-	RAMPAGE_only	11	11	14	0.400499	2.815072	chr5	41205257	41211396	LINE|L1|L1PA5	+	chr5	41199812	41213021	C6|ENST00000417809.1	-	41199812,41201557,41203087,41212911	41199912,41201714,41203250,41213021	0.928571
right_lobe_of_liver_female_adult_53_years	chr11	58578103	58578125	58578103	+	RAMPAGE_only	4	4	8	0.228857	3.000000	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58579110	58621042	ZFP91|ENST00000316059.6	+	58579110,58584855,58609829,58610297,58610949,58611603,58612277,58612761,58614228,58616715,58617195	58579622,58584884,58610039,58610334,58611054,58611738,58612328,58612840,58614343,58616815,58621042	0.750000
right_lobe_of_liver_female_adult_53_years	chr15	58431144	58431150	58431149	+	High_confidence	18	19	30	0.858213	4.481728	chr15	58431102	58431256	LINE|L2|L2a	+	chr15	58431514	58568873	STRG.78043.2	+	58431514,58431992,58538332,58541784,58542533,58545741,58548329,58560863,58563504,58568715	58431776,58432120,58538517,58541967,58542651,58545975,58548572,58560981,58563723,58568873	0.933333
right_lobe_of_liver_female_adult_53_years	chr3	149207829	149207867	149207866	-	High_confidence	5	5	10	0.286071	3.121928	chr3	149207702	149207880	DNA|hAT-Charlie|MER117	-	chr3	149186065	149207623	CP|ENST00000489736.5	-	149186065,149188051,149198366,149199711,149202101,149206167,149207362	149186732,149188202,149198578,149199864,149202241,149206339,149207623	0.700000
right_lobe_of_liver_female_adult_53_years	chr2	222600055	222600058	222600057	-	RAMPAGE_only	5	7	9	0.257464	2.725481	chr2	222599989	222600062	LINE|RTE-BovB|MamRTE1	-	chr2	222571777	222656115	STRG.17590.2	-	222571777,222599927,222613810,222619644,222623649,222624271,222624713,222628836,222630112,222631603,222633198,222634390,222639579,222640861,222642850,222646800,222648739,222656015	222572022,222600083,222613928,222619737,222623730,222624479,222624775,222628888,222630174,222631674,222633307,222634541,222639695,222640931,222643005,222646996,222648795,222656115	0.888889
right_lobe_of_liver_female_adult_53_years	chr9	129489063	129489126	129489125	+	High_confidence	59	73	219	6.264953	6.281926	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.863014
right_lobe_of_liver_female_adult_53_years	chr9	129488730	129488905	129488856	+	High_confidence	96	97	591	16.906792	5.909373	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.957699
right_lobe_of_liver_female_adult_53_years	chr1	75376017	75376029	75376017	-	RAMPAGE_only	3	3	9	0.257464	3.000000	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.777778
right_lobe_of_liver_female_adult_53_years	chr2	10406299	10406314	10406299	+	RAMPAGE_only	2	2	9	0.257464	3.000000	chr2	10406222	10406310	LINE|L2|L2c	+	chr2	10368763	10427617	HPCAL1|NM_001258359.1	+	10368763,10396834,10419733,10422982,10426723	10369217,10396920,10420135,10423088,10427617	0.888889
right_lobe_of_liver_female_adult_53_years	chr15	57402661	57402690	57402683	+	RAMPAGE_only	3	3	13	0.371892	3.584963	chr15	57402644	57402725	LINE|L2|L2a	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.923077
right_lobe_of_liver_female_adult_53_years	chr10	95457471	95457472	95457471	-	RAMPAGE_only	5	5	7	0.200250	2.521641	chr10	95457403	95457536	SINE|MIR|MIRb	+	chr10	95455698	95561378	STRG.59519.13	-	95455698,95491034,95493164,95561319	95460704,95491120,95493286,95561378	0.714286
right_lobe_of_liver_female_adult_53_years	chr15	89133388	89133417	89133388	+	RAMPAGE_only	5	6	15	0.429106	3.521641	chr15	89133190	89133834	LINE|L1|L1MC5	-	chr15	89116503	89183373	ABHD2|ENST00000562073.1	+	89116503,89151676,89155366,89175811,89183331	89116521,89151852,89155534,89175995,89183373	0.933333
right_lobe_of_liver_female_adult_53_years	chr11	58927664	58927738	58927693	+	High_confidence	41	48	243	6.951524	5.887789	chr11	58927656	58928383	LTR|ERVK|HERVK22-int	-	chr11	58927700	58956405	GLYATL1|ENST00000317391.8	+	58927700,58942539,58943542,58947045,58947857,58954769,58955175,58955609	58927829,58942584,58943666,58947165,58947965,58954896,58955353,58956405	0.975309
right_lobe_of_liver_female_adult_53_years	chr2	122808434	122808470	122808443	-	RAMPAGE_only	38	46	162	4.634349	6.452035	chr2	122808033	122811260	LINE|L1|L1PBa1	+	chr2	122800096	122803837	STRG.13655.1	-	122800096,122801365,122803790	122800216,122801497,122803837	0.604938
right_lobe_of_liver_female_adult_53_years	chr11	65434175	65434458	65434285	+	RAMPAGE_only	29	31	227	6.493810	6.365729	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65423637	65445540	STRG.62879.5	+	65423637,65434274	65434178,65445540	0.995595
right_lobe_of_liver_female_adult_53_years	chr17	66228684	66228716	66228684	-	High_confidence	9	10	34	0.972641	4.427287	chr17	66228520	66228817	SINE|Alu|AluY	+	chr17	66216790	66228637	APOH|ENST00000581797.5	-	66216790,66220553,66223697,66226027,66228019,66228606	66216967,66220742,66223774,66226124,66228196,66228637	0.970588
right_lobe_of_liver_female_adult_53_years	chr9	134373065	134373106	134373102	+	High_confidence	97	114	354	10.126911	6.791278	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134372481	134440585	STRG.56253.5	+	134372481,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134374130,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440585	0.991525
right_lobe_of_liver_female_adult_53_years	chr2	37147695	37147696	37147695	-	High_confidence	6	7	9	0.257464	3.000000	chr2	37147318	37147662	LINE|L1|L1PA4	-	chr2	37107272	37147806	EIF2AK2|ENST00000405334.5	-	37107272,37107473,37109193,37114730,37119958,37122505,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687	37107395,37107527,37109295,37114859,37120139,37122664,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147806	0.888889
right_lobe_of_liver_female_adult_53_years	chr7	35648461	35648472	35648471	-	High_confidence	8	15	25	0.715177	4.022055	chr7	35648430	35648540	DNA|hAT-Blackjack|MER63B	+	chr7	35633068	35648449	STRG.42488.4	-	35633068,35634311,35635134,35638349,35648405	35633851,35634429,35635458,35638472,35648449	0.920000
right_lobe_of_liver_female_adult_53_years	chr16	2757813	2757866	2757813	+	High_confidence	10	13	50	1.430355	4.702368	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.900000
right_lobe_of_liver_female_adult_53_years	chr7	11193340	11193367	11193340	+	High_confidence	7	8	33	0.944034	4.351410	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.818182
right_lobe_of_liver_female_adult_53_years	chr4	129900092	129900093	129900092	+	RAMPAGE_only	18	18	26	0.743784	3.997953	chr4	129899780	129900237	LTR|ERVK|LTR22A	-	chr4	129771658	129955368	LINC02465|ENST00000513875.5	+	129771658,129780009,129802991,129807003,129812001,129812661,129813673,129825339,129834209,129837370,129862567,129900537,129908633,129949076,129953273,129954377,129955251	129771687,129780099,129803115,129807148,129812065,129812760,129813785,129825452,129834324,129837425,129862768,129900654,129908703,129949137,129953339,129954576,129955368	0.615385
right_lobe_of_liver_female_adult_53_years	chr11	47569838	47569867	47569866	+	RAMPAGE_only	9	9	18	0.514928	3.499228	chr11	47569909	47570209	SINE|Alu|AluJb	+	chr11	47565897	47573461	PTPMT1|ENST00000527079.2	+	47565897,47569699,47571470	47565986,47569891,47573461	0.944444
right_lobe_of_liver_female_adult_53_years	chr9	113260986	113261215	113261214	+	RAMPAGE_only	47	51	187	5.349526	5.937992	chr9	113260978	113261279	SINE|Alu|AluSq2	+	chr9	113221561	113264492	SLC31A1|ENST00000374212.4	+	113221561,113256113,113257112,113258693,113260271	113221678,113256277,113257185,113258862,113264492	0.994652
right_lobe_of_liver_female_adult_53_years	chr12	111450071	111450095	111450071	+	RAMPAGE_only	4	4	13	0.371892	3.188722	chr12	111449926	111450222	SINE|Alu|AluSq2	-	chr12	111434861	111451623	SH2B3|NM_001291424.1	+	111434861,111446752,111446941,111447124,111447329,111447655,111447982	111435027,111446854,111447033,111447219,111447544,111447827,111451623	0.923077
right_lobe_of_liver_female_adult_53_years	chr4	75127261	75127264	75127261	-	RAMPAGE_only	3	3	8	0.228857	2.807355	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.875000
right_lobe_of_liver_female_adult_53_years	chr2	20217669	20217689	20217669	-	RAMPAGE_only	2	2	8	0.228857	3.000000	chr2	20217521	20217659	SINE|MIR|MIRc	-	chr2	20203817	20224280	SDC1|ENST00000429035.1	-	20203817,20205342,20224190	20204291,20205424,20224280	1.000000
right_lobe_of_liver_female_adult_53_years	chr17	19006126	19006127	19006126	-	RAMPAGE_only	6	6	7	0.200250	2.584963	chr17	19006122	19006230	LINE|L1|L1MD2	-	chr17	18968788	19004804	FAM83G|ENST00000388995.10	-	18968788,18977583,18979548,18988246,19003519,19004708	18971748,18978850,18979673,18988414,19004169,19004804	0.714286
right_lobe_of_liver_female_adult_53_years	chr14	23636366	23636367	23636366	+	High_confidence	36	37	47	1.344533	4.969414	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	0.893617
right_lobe_of_liver_female_adult_53_years	chr1	20896899	20896921	20896920	-	RAMPAGE_only	5	5	12	0.343285	3.277613	chr1	20896464	20897047	DNA|TcMar-Tigger|Tigger3b	+	chr1	20806469	21050994	EIF4G3|ENST00000264211.12	-	20806469,20810737,20813157,20817391,20825099,20827616,20829146,20840855,20849414,20851257,20853559,20854977,20857402,20860384,20862227,20864475,20865115,20879322,20886200,20893516,20895367,20899696,20904882,20941490,20950002,20969473,20973001,20980333,20981047,21002712,21050865	20807500,20810884,20813239,20817538,20825198,20827698,20829272,20841028,20849530,20851478,20853677,20855071,20857497,20860517,20862332,20864712,20865262,20879520,20886371,20893636,20895501,20899943,20904971,20942330,20950111,20969596,20973099,20980448,20981227,21002808,21050994	0.666667
right_lobe_of_liver_female_adult_53_years	chr7	150323668	150323729	150323728	-	High_confidence	27	28	171	4.891813	5.842401	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	0.959064
right_lobe_of_liver_female_adult_53_years	chr18	74551114	74551144	74551119	+	High_confidence	19	20	79	2.259960	5.813213	chr18	74550956	74551330	LTR|ERVL-MaLR|MSTA	+	chr18	74551118	74585025	STRG.87114.1	+	74551118,74556337,74559322,74560855,74562046,74567232,74571185,74576868,74578162,74580129,74583560,74584495	74551201,74556466,74559472,74561018,74562135,74567433,74571270,74577029,74578327,74580271,74583708,74585025	0.708861
right_lobe_of_liver_female_adult_53_years	chr12	7502503	7502525	7502503	-	High_confidence	23	26	47	1.344533	5.112996	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.978723
right_lobe_of_liver_female_adult_53_years	chr2	119476595	119476621	119476620	+	High_confidence	3	3	10	0.286071	3.321928	chr2	119476396	119476640	LTR|Gypsy|MamGypLTR3	+	chr2	119476447	119487346	AC013275.1|ENST00000413602.1	+	119476447,119485838	119476958,119487346	0.900000
right_lobe_of_liver_female_adult_53_years	chr12	57431746	57431773	57431772	+	High_confidence	2	2	7	0.200250	2.584963	chr12	57431709	57431798	LINE|L2|L2c	-	chr12	57431675	57434348	STRG.68394.1	+	57431675,57433702	57431967,57434348	0.857143
right_lobe_of_liver_female_adult_53_years	chr8	11864408	11864439	11864410	-	RAMPAGE_only	3	5	22	0.629356	4.021928	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.772727
right_lobe_of_liver_female_adult_53_years	chr3	42872117	42872159	42872117	+	High_confidence	35	40	121	3.461458	6.151647	chr3	42872069	42872212	SINE|MIR|MIR1_Amn	-	chr3	42872110	42900336	STRG.19941.6	+	42872110,42887537,42897037,42898549	42872545,42887701,42898362,42900336	0.719008
right_lobe_of_liver_female_adult_53_years	chr21	22062539	22062648	22062647	-	High_confidence	168	182	592	16.935399	6.617732	chr21	22062350	22062974	LINE|L2|L2a	+	chr21	22034916	22062809	STRG.92241.2	-	22034916,22042944,22062008	22041435,22043087,22062809	0.937500
right_lobe_of_liver_female_adult_53_years	chr7	96503510	96503516	96503515	-	High_confidence	13	14	24	0.686570	3.788755	chr7	96503114	96503968	LTR|Gypsy|MamGypsy2-I	-	chr7	96483712	96503510	SEM1|ENST00000611360.4	-	96483712,96486202,96496283,96503482	96483988,96486417,96496341,96503510	0.666667
right_lobe_of_liver_female_adult_53_years	chr8	85378112	85378113	85378112	-	High_confidence	18	19	19	0.543535	3.392147	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.947368
right_lobe_of_liver_female_adult_53_years	chr10	63594784	63594847	63594824	+	RAMPAGE_only	15	17	58	1.659211	5.067045	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	1.000000
right_lobe_of_liver_female_adult_53_years	chr3	48979494	48979524	48979494	+	RAMPAGE_only	11	11	24	0.686570	3.855389	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	1.000000
right_lobe_of_liver_female_adult_53_years	chr1	212237683	212237721	212237683	-	RAMPAGE_only	10	12	24	0.686570	3.658993	chr1	212237552	212237916	LTR|ERVL-MaLR|MSTC	-	chr1	212225279	212238977	AL451060.1|ENST00000431307.1	-	212225279,212230202,212238906	212225513,212230259,212238977	0.875000
right_lobe_of_liver_female_adult_53_years	chr11	66715226	66715236	66715235	-	RAMPAGE_only	6	6	10	0.286071	3.169925	chr11	66714958	66715210	DNA|hAT-Charlie|Charlie10	-	chr11	66685251	66721240	SPTBN2|ENST00000529997.5	-	66685251,66686993,66687426,66687867,66688003,66688168,66688652,66689095,66689804,66690038,66691283,66692535,66692969,66693185,66693771,66694138,66696276,66698638,66698991,66699405,66700525,66701583,66704597,66705683,66707515,66708140,66708901,66710581,66710916,66713630,66714090,66714315,66715221,66715829,66721083	66686440,66687167,66687647,66687918,66688079,66688311,66688849,66689180,66689943,66690283,66691658,66692740,66693100,66693446,66693861,66694363,66696540,66698785,66699082,66699608,66701282,66701721,66705468,66705837,66707818,66708299,66709019,66710769,66711029,66713746,66714171,66714407,66715395,66715981,66721240	0.900000
right_lobe_of_liver_female_adult_53_years	chr3	129433861	129433898	129433861	-	RAMPAGE_only	3	3	13	0.371892	3.334679	chr3	129433666	129433817	SINE|MIR|MIRc	-	chr3	129431265	129440007	MBD4|ENST00000503197.5	-	129431265,129432555,129433097,129433849,129434061,129436442,129437719,129439729	129431578,129432606,129433247,129433984,129434136,129437308,129437950,129440007	0.923077
right_lobe_of_liver_female_adult_53_years	chr10	12084745	12084746	12084745	+	RAMPAGE_only	13	13	14	0.400499	3.546594	chr10	12084768	12085060	SINE|Alu|AluSp	+	chr10	12089174	12094301	DHTKD1|ENST00000415935.1	+	12089174,12091512,12094072	12089255,12091684,12094301	0.500000
right_lobe_of_liver_female_adult_53_years	chr7	2242922	2242923	2242922	+	High_confidence	11	11	11	0.314678	3.459432	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
right_lobe_of_liver_female_adult_53_years	chr19	571748	571792	571791	-	High_confidence	5	5	15	0.429106	3.640224	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	1.000000
right_lobe_of_liver_female_adult_53_years	chr7	138117669	138117700	138117699	+	RAMPAGE_only	3	4	13	0.371892	3.418296	chr7	138117737	138118043	SINE|Alu|AluYk4	+	chr7	138076431	138118304	AKR1D1|NM_001190906.1	+	138076431,138088600,138091767,138097865,138106607,138107414,138113689,138116619	138076611,138088768,138091884,138097943,138106717,138107580,138113772,138118304	0.846154
right_lobe_of_liver_female_adult_53_years	chr4	118702497	118702507	118702497	+	RAMPAGE_only	3	3	6	0.171643	2.584963	chr4	118702494	118702788	SINE|Alu|AluSz	+	chr4	118685412	118715433	METTL14|ENST00000628452.2	+	118685412,118687922,118689369,118691541,118691980,118694435,118697181,118700549,118703934,118705610,118709997	118685600,118688011,118689468,118691612,118692068,118694526,118697323,118700642,118704051,118705821,118715433	0.833333
right_lobe_of_liver_female_adult_53_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	13	13	15	0.429106	3.664498	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	0.933333
right_lobe_of_liver_female_adult_53_years	chr19	45280132	45280167	45280132	+	High_confidence	3	3	9	0.257464	2.947703	chr19	45280066	45280316	SINE|Alu|AluJb	+	chr19	45280144	45287664	MARK4|ENST00000590897.1	+	45280144,45280574,45287446	45280483,45280734,45287664	1.000000
right_lobe_of_liver_female_adult_53_years	chr13	52159851	52159864	52159851	-	High_confidence	2	2	7	0.200250	2.584963	chr13	52159786	52159872	SINE|MIR|MIRc	+	chr13	52132642	52159861	NEK3|ENST00000610828.4	-	52132642,52133688,52135728,52136115,52136799,52141019,52143914,52144690,52148414,52151145,52151324,52152608,52153894,52154079,52156074,52159542	52133226,52133815,52135863,52136259,52136902,52141069,52143987,52144891,52148469,52151232,52151392,52152692,52153992,52154173,52156248,52159861	0.857143
right_lobe_of_liver_female_adult_53_years	chr17	66223711	66223768	66223711	-	RAMPAGE_only	98	113	691	19.767502	6.123780	chr17	66223580	66223683	DNA|hAT-Blackjack|MER81	-	chr17	66212038	66220630	APOH|ENST00000585162.1	-	66212038,66216787,66220553	66212188,66216967,66220630	0.819103
right_lobe_of_liver_female_adult_53_years	chr12	643625	643636	643635	-	High_confidence	60	60	232	6.636846	5.838509	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.603448
right_lobe_of_liver_female_adult_53_years	chr15	75347033	75347076	75347033	+	High_confidence	4	4	36	1.029855	4.627987	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.750000
right_lobe_of_liver_female_adult_53_years	chr1	75375936	75375986	75375936	-	RAMPAGE_only	6	6	21	0.600749	3.784184	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.714286
right_lobe_of_liver_female_adult_53_years	chr8	144996567	144996578	144996577	-	High_confidence	3	5	8	0.228857	2.807355	chr8	144996468	144996538	LINE|L1|L1PB4	-	chr8	144976684	144996162	ZNF252P|ENST00000427606.2	-	144976684,144994478	144978553,144996162	0.875000
right_lobe_of_liver_female_adult_53_years	chr15	30624357	30624368	30624357	+	High_confidence	5	5	18	0.514928	3.852169	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.666667
right_lobe_of_liver_female_adult_53_years	chr18	54234955	54234972	54234971	-	RAMPAGE_only	7	7	20	0.572142	4.021928	chr18	54234703	54235088	LTR|ERVL|LTR79	-	chr18	54151600	54224788	MBD2|ENST00000256429.7	-	54151600,54159764,54164522,54166075,54188873,54204997,54224017	54155311,54159903,54164700,54166166,54189011,54205157,54224788	1.000000
right_lobe_of_liver_female_adult_53_years	chr1	196795388	196795500	196795499	+	RAMPAGE_only	36	40	116	3.318423	5.076229	chr1	196795456	196797077	LTR|ERVL-MaLR|THE1B-int	+	chr1	196774815	196797782	STRG.7464.9	+	196774815,196779161,196779796,196788215,196790044,196793316,196794598	196774944,196779356,196779973,196788398,196790227,196794508,196797782	0.991379
right_lobe_of_liver_female_adult_53_years	chr19	44725180	44725187	44725180	-	RAMPAGE_only	49	49	132	3.776136	6.216679	chr19	44725104	44725160	SINE|MIR|MIR1_Amn	-	chr19	44632198	44718631	AC243964.2|ENST00000590796.1	-	44632198,44699083,44715949,44718449	44632619,44699177,44716081,44718631	0.666667
right_lobe_of_liver_female_adult_53_years	chr15	89198515	89198606	89198594	+	RAMPAGE_only	24	26	72	2.059711	5.234035	chr15	89198595	89198679	SINE|MIR|MIR3	+	chr15	89088149	89202360	ABHD2|NM_007011.7	+	89088149,89090282,89102499,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89202360	1.000000
right_lobe_of_liver_female_adult_53_years	chr14	81192568	81192608	81192607	-	RAMPAGE_only	2	2	6	0.171643	2.584963	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	1.000000
right_lobe_of_liver_female_adult_53_years	chr4	4269605	4269614	4269609	-	High_confidence	14	15	41	1.172891	3.865577	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.902439
right_lobe_of_liver_female_adult_53_years	chr14	24445411	24445429	24445411	+	RAMPAGE_only	3	3	7	0.200250	2.807355	chr14	24445432	24446094	DNA|TcMar-Mariner|HSMAR2	+	chr14	24474185	24477156	STRG.73275.1	+	24474185	24477156	0.571429
right_lobe_of_liver_female_adult_53_years	chr3	52644718	52644733	52644732	-	RAMPAGE_only	4	4	8	0.228857	2.500000	chr3	52644388	52644682	SINE|Alu|AluSc	-	chr3	52586429	52678567	PBRM1|ENST00000446103.5	-	52586429,52587352,52589069,52603520,52609312,52615350,52617261,52624896,52627272,52628893,52634601,52641953,52643247,52644703,52648343,52651741,52658198,52662132,52668497,52678499	52586688,52587510,52589252,52603732,52609955,52615456,52617538,52624941,52627370,52629035,52634815,52642045,52643343,52644789,52648442,52651810,52658315,52662276,52668645,52678567	1.000000
right_lobe_of_liver_female_adult_53_years	chr12	51773663	51773683	51773663	+	RAMPAGE_only	8	15	26	0.743784	3.642371	chr12	51773509	51773813	LINE|L1|L1MB8	+	chr12	51769842	51812858	STRG.68138.1	+	51769842,51770528,51774188,51780201,51786541,51788694,51789280,51790397,51794370,51806281	51769985,51770683,51774362,51780271,51786826,51788920,51789418,51790502,51794641,51812858	1.000000
right_lobe_of_liver_female_adult_53_years	chr3	58526760	58526766	58526765	-	High_confidence	186	187	295	8.439093	5.918888	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	0.969492
right_lobe_of_liver_female_adult_53_years	chrX	31932977	31932984	31932977	-	RAMPAGE_only	2	2	7	0.200250	2.584963	chrX	31932843	31933075	DNA|hAT-Charlie|MER20	-	chrX	31121672	31934079	STRG.95414.4	-	31121672,31134101,31146290,31147274,31169442,31172347,31173538,31178668,31180369,31182737,31203960,31206581,31209497,31223046,31260954,31323597,31348555,31444480,31478105,31478982,31496787,31507280,31627672,31657989,31679374,31729630,31773959,31819974,31836717,31875187,31929595,31932079,31934060	31121930,31134194,31146414,31147518,31169601,31172413,31173604,31178805,31180481,31182904,31204118,31206667,31209699,31223121,31261016,31323658,31348634,31444627,31478374,31479103,31496944,31507453,31627862,31658144,31679586,31729748,31774192,31820083,31836819,31875373,31929745,31932227,31934079	0.857143
right_lobe_of_liver_female_adult_53_years	chr11	20041738	20041743	20041738	+	RAMPAGE_only	5	5	9	0.257464	3.169925	chr11	20041726	20042128	LINE|L2|L2c	+	chr11	20022844	20121598	STRG.61723.5	+	20022844,20035958,20043980,20044967,20048727,20051288,20054079,20055768,20062306,20068185,20068323,20077551,20077992,20080063,20090864,20092205,20093098,20095671,20097576,20100936,20103254,20103652,20105530,20107663,20114591	20023132,20036097,20044272,20045670,20049195,20051333,20054240,20055957,20062359,20068209,20068398,20077635,20078104,20083179,20091018,20092368,20093199,20095767,20097745,20101172,20103409,20103724,20105727,20107782,20121598	0.666667
right_lobe_of_liver_female_adult_53_years	chr15	40389255	40389282	40389255	+	RAMPAGE_only	4	4	8	0.228857	2.807355	chr15	40389143	40389448	SINE|Alu|AluSp	-	chr15	40383254	40392023	KNSTRN|ENST00000559083.1	+	40383254,40389505,40389835,40391492,40391948	40383322,40389611,40389929,40391554,40392023	0.875000
right_lobe_of_liver_female_adult_53_years	chr9	73080369	73080370	73080369	-	High_confidence	59	59	59	1.687819	4.890621	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.932203
right_lobe_of_liver_female_adult_53_years	chr11	123061178	123061323	123061256	-	High_confidence	99	105	577	16.506293	6.543343	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.956672
right_lobe_of_liver_female_adult_53_years	chr17	771446	771456	771446	-	High_confidence	5	5	9	0.257464	2.947703	chr17	771436	771586	LINE|L1|L1ME4a	+	chr17	760072	771404	GLOD4|ENST00000573137.1	-	760072,769868,770043,771324	760238,769955,770157,771404	1.000000
right_lobe_of_liver_female_adult_53_years	chr16	70747224	70747255	70747254	-	RAMPAGE_only	20	20	33	0.944034	4.288910	chr16	70746928	70747495	LINE|L1|L1MB7	+	chr16	70731274	70745082	VAC14|ENST00000561879.1	-	70731274,70731494,70744422,70745025	70731359,70731627,70744579,70745082	0.545455
right_lobe_of_liver_female_adult_53_years	chr17	69268746	69268817	69268746	-	High_confidence	22	22	168	4.805992	6.072652	chr17	69268468	69268963	LTR|ERVL|LTR105_Mam	+	chr17	69248259	69268874	ABCA5|ENST00000586811.1	-	69248259,69249904,69250471,69251746,69253572,69253793,69254314,69255542,69255732,69256156,69259705,69260337,69261124,69261634,69264734,69267942,69268719	69248317,69249984,69250621,69251866,69253667,69253869,69254490,69255634,69255850,69256283,69259797,69260412,69261259,69261748,69264905,69268056,69268874	0.803571
right_lobe_of_liver_female_adult_53_years	chr19	35137184	35137206	35137205	+	High_confidence	41	45	86	2.460210	4.983763	chr19	35137130	35137263	SINE|MIR|MIRc	-	chr19	35137188	35142989	STRG.88624.5	+	35137188,35140075,35140596,35141131,35141535,35142471,35142719,35142916	35137291,35140140,35140629,35141206,35141572,35142521,35142771,35142989	0.930233
right_lobe_of_liver_female_adult_53_years	chr12	27725666	27725667	27725666	+	RAMPAGE_only	16	16	16	0.457713	3.375000	chr12	27725355	27725764	LINE|L1|L1M5	-	chr12	27710846	27755537	MRPS35|ENST00000542791.1	+	27710846,27755180	27710955,27755537	0.875000
right_lobe_of_liver_female_adult_53_years	chr11	65442879	65443102	65442879	+	RAMPAGE_only	15	15	205	5.864454	5.254608	chr11	65442603	65442894	SINE|Alu|AluSx4	+	chr11	65423637	65445540	STRG.62879.5	+	65423637,65434274	65434178,65445540	0.990244
right_lobe_of_liver_female_adult_53_years	chr9	37426547	37426624	37426623	+	RAMPAGE_only	23	23	84	2.402996	5.527684	chr9	37426667	37426970	SINE|Alu|AluSx3	+	chr9	37427705	37436989	GRHPR|ENST00000497693.1	+	37427705,37436660	37432138,37436989	1.000000
right_lobe_of_liver_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	58	58	58	1.659211	3.904805	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.965517
right_lobe_of_liver_female_adult_53_years	chr4	73144752	73144771	73144752	-	RAMPAGE_only	11	12	20	0.572142	3.642150	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.950000
right_lobe_of_liver_female_adult_53_years	chr4	73104198	73104252	73104198	-	High_confidence	83	83	274	7.838344	6.312747	chr4	73103951	73104200	DNA|hAT-Charlie|Charlie2b	-	chr4	73098072	73104080	STRG.27094.13	-	73098072,73102375,73104002	73098520,73102547,73104080	0.952555
right_lobe_of_liver_female_adult_53_years	chr19	9658014	9658030	9658029	-	RAMPAGE_only	8	8	14	0.400499	3.238901	chr19	9657864	9657989	SINE|Alu|FLAM_C	-	chr19	9652278	9675044	ZNF562|ENST00000453372.6	-	9652278,9656546,9658008,9659378,9660719,9675014	9653881,9656653,9658135,9659467,9660874,9675044	0.928571
right_lobe_of_liver_female_adult_53_years	chr2	210540250	210540291	210540290	+	RAMPAGE_only	13	14	28	0.800999	4.423252	chr2	210540076	210540367	LTR|Gypsy|LTR81B	-	chr2	210556537	210679107	CPS1|ENST00000233072.9	+	210556537,210573297,210576345,210577420,210579713,210582616,210588057,210590105,210590799,210591830,210592878,210594507,210595486,210599371,210600554,210602201,210605101,210606730,210608360,210612116,210616422,210637701,210639149,210639995,210642483,210647862,210648472,210650362,210654024,210656524,210658598,210660484,210663122,210668185,210674901,210675727,210677006,210677886	210556859,210573407,210576490,210577510,210579770,210582709,210588147,210590234,210590906,210591969,210592956,210594606,210595582,210599561,210600712,210602330,210605246,210606941,210608559,210612293,210616541,210637843,210639215,210640059,210642665,210648057,210648540,210650438,210654102,210656632,210658688,210660655,210663197,210668284,210674961,210675840,210677136,210679107	0.642857
right_lobe_of_liver_female_adult_53_years	chr19	4537609	4537913	4537742	-	RAMPAGE_only	75	79	559	15.991365	6.026360	chr19	4537557	4537866	SINE|Alu|AluY	-	chr19	4537214	4540024	LRG1|NM_052972.2	-	4537214,4539981	4538951,4540024	0.964222
right_lobe_of_liver_female_adult_53_years	chr10	47555597	47555635	47555597	+	RAMPAGE_only	6	6	40	1.144284	4.681881	chr10	47555548	47555739	LINE|L2|L2	+	chr10	47563603	47569697	GLUD1P8|ENST00000585063.2	+	47563603,47567952,47569631	47563684,47568008,47569697	0.700000
right_lobe_of_liver_female_adult_53_years	chr11	93499303	93499345	93499344	-	High_confidence	9	11	31	0.886820	4.128079	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	75163248	75163254	75163248	+	RAMPAGE_only	4	4	9	0.257464	2.750000	chr11	75163135	75163290	SINE|MIR|MIRb	-	chr11	75165873	75170004	SLCO2B1|ENST00000526839.1	+	75165873,75169172,75169665	75165949,75169406,75170004	0.666667
right_lobe_of_liver_female_adult_53_years	chr6	159716469	159716507	159716488	+	RAMPAGE_only	4	4	23	0.657963	4.201841	chr6	159716167	159716546	LTR|ERVL-MaLR|MLT1L	-	chr6	159725584	159756319	WTAP|ENST00000358372.8	+	159725584,159736257,159738989,159742087,159743664,159748190,159753459,159755027	159727333,159736295,159739045,159742146,159743792,159748369,159753614,159756319	0.652174
right_lobe_of_liver_female_adult_53_years	chr19	49805926	49805927	49805926	+	RAMPAGE_only	5	5	8	0.228857	2.807355	chr19	49805949	49806092	SINE|MIR|MIRb	+	chr19	49804875	49807113	AP2A1|ENST00000601356.1	+	49804875	49807113	0.875000
right_lobe_of_liver_female_adult_53_years	chr19	7732792	7732793	7732792	-	High_confidence	10	11	11	0.314678	3.121928	chr19	7732758	7732907	SINE|Alu|FLAM_C	+	chr19	7729123	7732793	STRG.87733.1	-	7729123,7729820,7730018,7730350,7730754,7731025,7731265,7731660,7732047,7732791	7729504,7729936,7730167,7730440,7730859,7731088,7731319,7731771,7732122,7732793	0.909091
right_lobe_of_liver_female_adult_53_years	chr4	69725681	69725748	69725730	-	RAMPAGE_only	3	5	20	0.572142	4.021928	chr4	69723014	69726028	LINE|L1|L1PA5	+	chr4	69721161	69760712	SULT1B1|ENST00000310613.7	-	69721161,69730500,69733412,69734137,69749720,69754669,69755069,69760458	69727200,69730681,69733507,69734264,69749818,69754798,69755261,69760712	1.000000
right_lobe_of_liver_female_adult_53_years	chr22	35311030	35311077	35311057	+	High_confidence	7	8	29	0.829606	3.781454	chr22	35310706	35311148	LINE|L2|L2c	-	chr22	35311061	35323819	TOM1|ENST00000443206.2	+	35311061,35317876,35321958,35323027,35323495,35323767	35311127,35317961,35322037,35323177,35323630,35323819	0.896552
right_lobe_of_liver_female_adult_53_years	chr13	106562018	106562045	106562018	-	High_confidence	5	5	22	0.629356	4.368523	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.909091
right_lobe_of_liver_female_adult_53_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	42	42	42	1.201498	4.707677	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
right_lobe_of_liver_female_adult_53_years	chr21	31658131	31658176	31658142	-	RAMPAGE_only	11	12	51	1.458962	4.701645	chr21	31658107	31658234	LINE|CR1|L3	-	chr21	31653592	31659500	AP000253.1|ENST00000449339.1	-	31653592,31657933,31659396	31655427,31658227,31659500	0.882353
right_lobe_of_liver_female_adult_53_years	chr2	54631991	54631992	54631991	+	RAMPAGE_only	6	6	9	0.257464	2.750000	chr2	54631930	54632098	SINE|Alu|AluJb	+	chr2	54558393	54662308	SPTBN1|NM_178313.2	+	54558393,54599091,54612160,54616206,54617607,54618077,54621399,54622299,54623478,54624803,54625931,54628096,54628932,54629891,54630854,54632565,54637712,54642982,54644322,54645228,54645927,54646193,54647130,54648985,54649614,54653608,54655069,54655913,54657849,54659153,54659935	54558887,54599243,54612334,54616298,54617688,54618193,54621512,54622487,54623596,54624962,54626234,54628250,54629803,54630029,54631611,54632768,54637803,54643129,54644586,54645453,54646017,54646475,54647261,54649190,54649989,54653853,54655208,54655998,54658046,54659266,54662308	0.888889
right_lobe_of_liver_female_adult_53_years	chr2	182030838	182030862	182030838	+	High_confidence	2	2	8	0.228857	2.750000	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.500000
right_lobe_of_liver_female_adult_53_years	chr12	126772258	126772259	126772258	-	High_confidence	4	4	7	0.200250	2.807355	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126752340	126772262	LINC00944|ENST00000536517.1	-	126752340,126760931,126772078	126752451,126761057,126772262	0.857143
right_lobe_of_liver_female_adult_53_years	chr11	65432923	65433460	65432923	+	RAMPAGE_only	21	22	387	11.070945	6.409388	chr11	65432693	65433229	LINE|L1|L1PB3	-	chr11	65423637	65445540	STRG.62879.5	+	65423637,65434274	65434178,65445540	1.000000
right_lobe_of_liver_female_adult_53_years	chrX	5726311	5726325	5726311	-	High_confidence	4	4	8	0.228857	2.750000	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	1.000000
right_lobe_of_liver_female_adult_53_years	chr1	19980361	19980363	19980361	-	High_confidence	13	26	26	0.743784	4.103910	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	1.000000
right_lobe_of_liver_female_adult_53_years	chr7	117152854	117152862	117152857	+	RAMPAGE_only	4	4	14	0.400499	3.026987	chr7	117152675	117153021	LTR|Gypsy|MamGyp-int	-	chr7	117173408	117209937	ST7|ENST00000485394.6	+	117173408,117189320,117190833,117209786	117173566,117189393,117190936,117209937	0.857143
right_lobe_of_liver_female_adult_53_years	chr5	39124255	39124256	39124255	-	High_confidence	7	8	8	0.228857	2.521641	chr5	39124110	39124208	SINE|MIR|MIRc	-	chr5	39107057	39124317	FYB1|ENST00000647313.1	-	39107057,39108230,39110355,39118873,39119534,39122335,39124252	39107465,39108262,39110389,39119036,39119634,39122402,39124317	0.875000
right_lobe_of_liver_female_adult_53_years	chr1	176150058	176150067	176150065	-	RAMPAGE_only	3	5	9	0.257464	2.947703	chr1	176149992	176150111	DNA|hAT-Charlie|MER5A	-	chr1	176043215	176135082	COP1|ENST00000459744.5	-	176043215,176043709,176046180,176081151,176085775,176116623,176133846,176135009	176043267,176043818,176046324,176081287,176085890,176116681,176133900,176135082	0.666667
right_lobe_of_liver_female_adult_53_years	chr10	106011435	106011499	106011435	+	High_confidence	146	148	594	16.992614	6.028351	chr10	106009563	106011791	LINE|L1|L1M1	-	chr10	106011458	106014658	STRG.59960.1	+	106011458,106013536	106011654,106014658	0.920875
right_lobe_of_liver_female_adult_53_years	chr6	53616975	53617122	53617008	-	High_confidence	218	237	739	21.140642	6.902263	chr6	53616804	53617217	LTR|ERVL-MaLR|MSTA	-	chr6	53561288	53617007	AL033397.1|ENST00000502390.5	-	53561288,53564749,53569422,53573199,53616885	53564420,53564889,53569605,53573275,53617007	0.726658
right_lobe_of_liver_female_adult_53_years	chr7	99653036	99653037	99653036	-	RAMPAGE_only	5	5	7	0.200250	2.521641	chr7	99652981	99653166	LTR|ERVL|LTR84b	+	chr7	99652290	99660602	CYP3A5|ENST00000488187.1	-	99652290,99660498	99652779,99660602	0.571429
right_lobe_of_liver_female_adult_53_years	chr3	186665211	186665213	186665211	+	High_confidence	3	6	6	0.171643	2.584963	chr3	186665063	186665369	SINE|Alu|AluSx3	-	chr3	186665951	186678240	HRG|NM_000412.4	+	186665951,186668934,186669937,186671622,186672786,186675088,186677046	186666214,186669051,186670028,186671789,186672867,186675190,186678240	1.000000
right_lobe_of_liver_female_adult_53_years	chr4	73590645	73590682	73590681	-	RAMPAGE_only	30	30	126	3.604494	6.183294	chr4	73590575	73590742	LTR|ERVL|LTR86A2	+	chr4	73574570	73620412	RASSF6|ENST00000395777.6	-	73574570,73576409,73576612,73581816,73585179,73587839,73593450,73598639,73611730,73620287	73576310,73576507,73576731,73581868,73585364,73587934,73593593,73598718,73611829,73620412	0.777778
right_lobe_of_liver_female_adult_53_years	chr3	125617971	125618008	125617971	+	High_confidence	13	17	40	1.144284	4.734512	chr3	125616037	125618743	LTR|ERVL|HERVL-int	+	chr3	125618034	125619157	STRG.22109.1	+	125618034	125619157	0.925000
right_lobe_of_liver_female_adult_53_years	chr5	134632140	134632167	134632150	+	High_confidence	11	11	32	0.915427	3.343762	chr5	134631917	134632237	SINE|Alu|AluY	+	chr5	134632165	134632425	STRG.33895.1	+	134632165	134632425	0.718750
right_lobe_of_liver_female_adult_53_years	chr1	121511548	121511586	121511558	-	RAMPAGE_only	9	9	64	1.830854	4.953005	chr1	121510491	121511971	LTR|ERV1|HERV9N-int	+	chr1	121494378	121510383	AL592494.1|ENST00000437523.2	-	121494378,121509740,121510355	121494595,121509804,121510383	0.687500
right_lobe_of_liver_female_adult_53_years	chr10	123056465	123056528	123056527	+	RAMPAGE_only	8	12	53	1.516176	4.979098	chr10	123056180	123056530	LTR|ERVL-MaLR|THE1A	-	chr10	123009015	123058311	ACADSB|ENST00000358776.6	+	123009015,123034355,123037746,123040465,123041208,123043045,123044392,123047208,123051048,123053060,123053694	123009071,123034515,123037847,123040672,123041379,123043171,123044485,123047298,123051186,123053160,123058311	0.981132
right_lobe_of_liver_female_adult_53_years	chr2	174410277	174410341	174410277	+	High_confidence	5	5	28	0.800999	3.873141	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.714286
right_lobe_of_liver_female_adult_53_years	chr7	30594379	30594396	30594389	-	High_confidence	8	9	36	1.029855	4.815623	chr7	30594385	30594501	SINE|MIR|MIR3	+	chr7	30578069	30594758	GARS-DT|ENST00000582549.1	-	30578069,30579005,30579230,30584422,30584710,30585329,30594710	30578091,30579128,30579314,30584453,30584808,30585479,30594758	0.527778
right_lobe_of_liver_female_adult_53_years	chr2	54540012	54540035	54540012	+	RAMPAGE_only	7	7	19	0.543535	4.037401	chr2	54539864	54540208	LTR|ERVL-MaLR|MLT1A0	+	chr2	54558393	54662308	SPTBN1|NM_178313.2	+	54558393,54599091,54612160,54616206,54617607,54618077,54621399,54622299,54623478,54624803,54625931,54628096,54628932,54629891,54630854,54632565,54637712,54642982,54644322,54645228,54645927,54646193,54647130,54648985,54649614,54653608,54655069,54655913,54657849,54659153,54659935	54558887,54599243,54612334,54616298,54617688,54618193,54621512,54622487,54623596,54624962,54626234,54628250,54629803,54630029,54631611,54632768,54637803,54643129,54644586,54645453,54646017,54646475,54647261,54649190,54649989,54653853,54655208,54655998,54658046,54659266,54662308	0.947368
right_lobe_of_liver_female_adult_53_years	chr20	50172544	50172595	50172571	+	High_confidence	3	3	15	0.429106	3.773557	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.866667
right_lobe_of_liver_female_adult_53_years	chr18	74551071	74551072	74551071	+	High_confidence	215	220	224	6.407989	6.415093	chr18	74550956	74551330	LTR|ERVL-MaLR|MSTA	+	chr18	74551118	74585025	STRG.87114.1	+	74551118,74556337,74559322,74560855,74562046,74567232,74571185,74576868,74578162,74580129,74583560,74584495	74551201,74556466,74559472,74561018,74562135,74567433,74571270,74577029,74578327,74580271,74583708,74585025	0.678571
right_lobe_of_liver_female_adult_53_years	chr1	234713054	234713055	234713054	-	RAMPAGE_only	8	8	10	0.286071	3.321928	chr1	234712984	234713136	LINE|L2|L2c	+	chr1	234688759	234689228	STRG.8952.1	-	234688759	234689228	0.500000
right_lobe_of_liver_female_adult_53_years	chr3	12648714	12648735	12648731	-	RAMPAGE_only	3	3	12	0.343285	3.084963	chr3	12648598	12648757	SINE|Alu|AluSz6	+	chr3	12584332	12664125	RAF1|ENST00000423275.5	-	12584332,12584846,12585121,12585680,12587590,12590797,12591707,12599690,12600151,12600387,12604135,12606200,12608765,12609232,12618514,12663812	12584657,12584981,12585253,12585799,12587637,12590974,12591792,12599808,12600279,12600415,12604289,12606299,12608923,12609335,12618747,12664125	1.000000
right_lobe_of_liver_female_adult_53_years	chr12	95996131	95996172	95996131	-	High_confidence	1	1	8	0.228857	2.807355	chr12	95996044	95996084	LINE|L2|L2b	-	chr12	95974079	95996225	HAL|ENST00000546999.5	-	95974079,95976428,95976597,95977943,95980555,95980814,95983910,95985907,95986064,95987066,95988192,95990392,95992679,95993450,95993925,95994089,95994797,95994932,95995663,95996077	95974372,95976498,95976706,95978078,95980721,95980863,95983991,95985966,95986160,95987214,95988240,95990532,95992805,95993488,95993998,95994164,95994825,95994993,95995991,95996225	0.750000
right_lobe_of_liver_female_adult_53_years	chr10	79446860	79446869	79446860	-	RAMPAGE_only	27	28	62	1.773640	4.262727	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.935484
right_lobe_of_liver_female_adult_53_years	chr4	73343576	73343628	73343627	+	High_confidence	22	23	146	4.176636	5.453006	chr4	73343412	73343766	LTR|ERVL|LTR33	-	chr4	73343454	73353759	STRG.27134.1	+	73343454,73349771,73353343	73343686,73349896,73353759	0.719178
right_lobe_of_liver_female_adult_53_years	chr5	52861516	52861546	52861545	+	RAMPAGE_only	4	4	18	0.514928	3.725481	chr5	52861588	52861889	SINE|Alu|AluJo	+	chr5	52863972	52887891	ITGA1|ENST00000513737.5	+	52863972,52864762,52864970,52865689,52881872,52887814	52864018,52864851,52865082,52865817,52882021,52887891	0.888889
right_lobe_of_liver_female_adult_53_years	chr17	82081606	82081626	82081606	-	High_confidence	6	6	18	0.514928	3.734522	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.666667
right_lobe_of_liver_female_adult_53_years	chr3	187021850	187021852	187021851	+	High_confidence	8	12	17	0.486321	3.625000	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.941176
right_lobe_of_liver_female_adult_53_years	chr2	54632021	54632026	54632021	+	RAMPAGE_only	4	5	9	0.257464	2.947703	chr2	54631930	54632098	SINE|Alu|AluJb	+	chr2	54558393	54662308	SPTBN1|NM_178313.2	+	54558393,54599091,54612160,54616206,54617607,54618077,54621399,54622299,54623478,54624803,54625931,54628096,54628932,54629891,54630854,54632565,54637712,54642982,54644322,54645228,54645927,54646193,54647130,54648985,54649614,54653608,54655069,54655913,54657849,54659153,54659935	54558887,54599243,54612334,54616298,54617688,54618193,54621512,54622487,54623596,54624962,54626234,54628250,54629803,54630029,54631611,54632768,54637803,54643129,54644586,54645453,54646017,54646475,54647261,54649190,54649989,54653853,54655208,54655998,54658046,54659266,54662308	1.000000
right_lobe_of_liver_female_adult_53_years	chr3	58377952	58377953	58377952	-	RAMPAGE_only	7	7	7	0.200250	2.521641	chr3	58377660	58378426	LINE|L1|HAL1	+	chr3	58192626	58214697	DNASE1L3|ENST00000483681.5	-	58192626,58197820,58200996,58204768,58205470,58208217,58210765,58214107,58214301	58193439,58197978,58201109,58204881,58205560,58208306,58211003,58214196,58214697	0.714286
right_lobe_of_liver_female_adult_53_years	chr3	149224221	149224226	149224225	+	High_confidence	337	337	713	20.396858	6.677872	chr3	149224217	149224520	SINE|Alu|AluY	+	chr3	149224212	149226406	STRG.22876.2	+	149224212,149224996,149226007	149224316,149225376,149226406	0.890603
right_lobe_of_liver_female_adult_53_years	chr2	87017973	87017974	87017973	-	High_confidence	4	4	7	0.200250	2.521641	chr2	87017858	87018076	LINE|L1|L1PA16	+	chr2	87012624	87017985	PLGLB1|ENST00000494194.5	-	87012624,87016301,87017552,87017952	87013119,87016408,87017688,87017985	0.714286
right_lobe_of_liver_female_adult_53_years	chr3	135965670	135965742	135965723	+	High_confidence	6	6	50	1.430355	4.897987	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.980000
right_lobe_of_liver_female_adult_53_years	chr17	43508342	43508343	43508342	+	RAMPAGE_only	16	17	22	0.629356	3.975418	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	0.954545
right_lobe_of_liver_female_adult_53_years	chr1	67533140	67533158	67533154	-	RAMPAGE_only	3	3	9	0.257464	3.000000	chr1	67533014	67533307	SINE|Alu|AluSz6	-	chr1	67407809	67430440	SERBP1|NM_015640.3	-	67407809,67415165,67420008,67424199,67424887,67425082,67426134,67429987	67413263,67415339,67420186,67424277,67424959,67425223,67426285,67430440	0.666667
right_lobe_of_liver_female_adult_53_years	chr10	133514368	133514369	133514368	-	RAMPAGE_only	8	10	11	0.314678	3.121928	chr10	133514136	133514490	LTR|ERVL-MaLR|THE1B	-	chr10	133471925	133473580	STRG.60846.1	-	133471925	133473580	0.727273
right_lobe_of_liver_female_adult_53_years	chr4	169115334	169115347	169115346	-	RAMPAGE_only	4	4	18	0.514928	3.734522	chr4	169115255	169115782	DNA|hAT-Charlie|MER1A	+	chr4	169094255	169156873	STRG.28976.3	-	169094255,169106846,169116268,169117522,169120818,169122099,169136317,169155479,169156403	169096687,169107205,169116630,169117782,169120989,169122266,169136620,169155575,169156873	0.888889
right_lobe_of_liver_female_adult_53_years	chr10	96620372	96620511	96620372	-	High_confidence	55	55	216	6.179132	6.350913	chr10	96620235	96620332	LINE|L2|L2b	-	chr10	96603739	96620411	PIK3AP1|ENST00000489982.1	-	96603739,96609711,96616638,96620351	96604049,96609867,96616711,96620411	0.574074
right_lobe_of_liver_female_adult_53_years	chr20	50306799	50306833	50306807	-	RAMPAGE_only	11	11	31	0.886820	3.755423	chr20	50306648	50306881	LINE|L2|L2c	+	chr20	50302217	50305404	STRG.91517.1	-	50302217,50305323	50302916,50305404	0.838710
right_lobe_of_liver_female_adult_53_years	chr5	55982738	55982801	55982757	-	High_confidence	15	15	60	1.716426	4.931135	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.983333
right_lobe_of_liver_female_adult_53_years	chr19	15829094	15829095	15829094	+	High_confidence	8	8	8	0.228857	3.000000	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	0.625000
right_lobe_of_liver_female_adult_53_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	44	45	45	1.287319	4.289342	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.977778
right_lobe_of_liver_female_adult_53_years	chr6	79631273	79631358	79631302	+	High_confidence	342	343	1130	32.326016	6.818285	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.993805
right_lobe_of_liver_female_adult_53_years	chr11	67022708	67022721	67022718	+	High_confidence	12	14	38	1.087070	4.836592	chr11	67022615	67022807	SINE|MIR|MIRb	+	chr11	67022718	67050863	SYT12|NM_001318773.1	+	67022718,67030121,67030434,67034644,67039810,67043637,67044592,67045743,67048583	67022925,67030178,67030559,67034838,67040203,67043853,67044713,67045877,67050863	0.868421
right_lobe_of_liver_female_adult_53_years	chr5	173790915	173790981	173790930	-	High_confidence	98	100	691	19.767502	7.428061	chr5	173790732	173790899	DNA|hAT-Tip100|MER115	-	chr5	173786927	173790925	LINC01485|ENST00000523617.5	-	173786927,173787688,173790635,173790808	173787247,173787745,173790727,173790925	0.710564
right_lobe_of_liver_female_adult_53_years	chr5	73727136	73727153	73727136	+	RAMPAGE_only	3	3	8	0.228857	2.807355	chr5	73727157	73727219	LINE|CR1|L3b	+	chr5	73684831	73941589	ARHGEF28|ENST00000437974.5	+	73684831,73749836,73752908,73773854,73776515,73780675,73794401,73795330,73832337,73840479,73846267,73848975,73852649,73857655,73858086,73864816,73865964,73867875,73868099,73870068,73872998,73882471,73883766,73885849,73887602,73892051,73893196,73894392,73897961,73901183,73904221,73904357,73909411,73911274,73923086,73940843	73684884,73749984,73753202,73774038,73776696,73780745,73794454,73795391,73832459,73840760,73846475,73849087,73852692,73857779,73858219,73864872,73866013,73868020,73868227,73870209,73873246,73882594,73883884,73886104,73887679,73892230,73893288,73894575,73898093,73901284,73904260,73904405,73909897,73911575,73923164,73941589	0.750000
right_lobe_of_liver_female_adult_53_years	chr16	75376726	75376746	75376726	-	RAMPAGE_only	4	4	8	0.228857	3.000000	chr16	75376668	75377149	LTR|ERV1|MER66B	+	chr16	75293905	75363035	CFDP1|ENST00000564793.1	-	75293905,75305023,75362874	75294042,75305182,75363035	0.500000
right_lobe_of_liver_female_adult_53_years	chr16	28608315	28608363	28608315	-	High_confidence	6	6	36	1.029855	4.707715	chr16	28608009	28608286	SINE|Alu|AluSp	-	chr16	28605195	28608920	SULT1A1|ENST00000569554.5	-	28605195,28606055,28606760,28606950,28608290,28608477,28608707	28605933,28606236,28606855,28607077,28608388,28608603,28608920	0.944444
right_lobe_of_liver_female_adult_53_years	chr3	177896679	177896697	177896696	+	RAMPAGE_only	8	9	13	0.371892	3.700440	chr3	177896609	177898078	LINE|L1|L1M3c	+	chr3	177816864	177899224	LINC02015|ENST00000436078.5	+	177816864,177895612,177896563	177816996,177895776,177899224	0.923077
right_lobe_of_liver_female_adult_53_years	chr11	2376165	2376260	2376179	+	High_confidence	47	58	361	10.327161	6.069904	chr11	2376100	2376285	DNA|hAT-Charlie|MER3	-	chr11	2376176	2397419	CD81|NM_001297649.1	+	2376176,2390411,2394094,2394971,2395415,2395868,2396627,2396803	2376357,2390526,2394192,2395046,2395520,2395970,2396714,2397419	0.941828
right_lobe_of_liver_female_adult_53_years	chr12	29640657	29640674	29640670	-	High_confidence	3	3	8	0.228857	2.807355	chr12	29640284	29642617	LINE|L1|L1PBa1	+	chr12	29505981	29641238	TMTC1|ENST00000319685.12	-	29505981,29512042,29514481,29516348,29517426,29518471,29520617,29536208,29556856,29572104,29583406,29604177,29633146,29640559	29506986,29512120,29514604,29516486,29517571,29518607,29520720,29536317,29557000,29572218,29583574,29604299,29633336,29641238	0.625000
right_lobe_of_liver_female_adult_53_years	chr21	38905451	38905458	38905457	-	High_confidence	123	131	247	7.065952	5.942773	chr21	38905254	38905659	LTR|ERV1|LTR9B	-	chr21	38901418	38905446	STRG.93127.1	-	38901418,38904954	38901965,38905446	0.874494
right_lobe_of_liver_female_adult_53_years	chr13	48379638	48379648	48379638	+	RAMPAGE_only	2	4	9	0.257464	2.947703	chr13	48379680	48379983	SINE|Alu|AluSc	+	chr13	48444827	48456307	RB1|ENST00000480491.1	+	48444827,48452992,48456203	48445221,48453111,48456307	0.555556
right_lobe_of_liver_female_adult_53_years	chr3	151766780	151766781	151766780	+	RAMPAGE_only	6	7	9	0.257464	2.750000	chr3	151766184	151766973	LINE|L1|L1MC3	-	chr3	151770455	151784894	AADACP1|NR_026915.1	+	151770455,151775694,151783831	151770611,151775764,151784894	0.888889
right_lobe_of_liver_female_adult_53_years	chr4	13698185	13698239	13698202	-	RAMPAGE_only	4	4	19	0.543535	4.037401	chr4	13697916	13698275	LTR|ERVL-MaLR|MLT1A0	-	chr4	13658416	13676029	STRG.25086.1	-	13658416,13675981	13660049,13676029	0.631579
right_lobe_of_liver_female_adult_53_years	chr1	31471567	31471568	31471567	-	High_confidence	6	8	8	0.228857	2.750000	chr1	31471367	31471933	LTR|ERV1|LTR10A	-	chr1	31459947	31471552	STRG.1004.1	-	31459947,31461321,31471065	31460503,31461407,31471552	1.000000
right_lobe_of_liver_female_adult_53_years	chr8	22392883	22392890	22392883	+	High_confidence	3	3	8	0.228857	2.500000	chr8	22392932	22392982	LINE|L2|L2b	+	chr8	22392829	22404870	SLC39A14|ENST00000520832.1	+	22392829,22404695	22393232,22404870	0.875000
right_lobe_of_liver_female_adult_53_years	chr1	147517874	147517875	147517874	-	High_confidence	9	9	9	0.257464	2.725481	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147258884	147517875	LINC00624|ENST00000619867.4	-	147258884,147384667,147408589,147514337,147515520,147517442	147260976,147384863,147408689,147514448,147515676,147517875	1.000000
right_lobe_of_liver_female_adult_53_years	chr14	58424047	58424096	58424095	-	RAMPAGE_only	4	4	17	0.486321	3.454822	chr14	58423952	58424081	LINE|CR1|L3	-	chr14	58408663	58427114	TIMM9|ENST00000556007.6	-	58408663,58410842,58411906,58424007,58427053	58409099,58410938,58411971,58424095,58427114	0.941176
right_lobe_of_liver_female_adult_53_years	chr5	150137330	150137358	150137335	-	High_confidence	6	6	33	0.944034	4.687500	chr5	150137246	150137416	SINE|MIR|MIR3	+	chr5	150134856	150137437	PDGFRB|ENST00000517957.1	-	150134856,150135554,150137007,150137399	150135016,150135878,150137053,150137437	0.818182
right_lobe_of_liver_female_adult_53_years	chr13	110507456	110507480	110507462	+	High_confidence	4	5	15	0.429106	3.773557	chr13	110507382	110507519	LINE|RTE-X|L4_A_Mam	-	chr13	110507443	110512133	COL4A2|ENST00000463084.1	+	110507443,110507934,110511933	110507635,110508221,110512133	0.666667
right_lobe_of_liver_female_adult_53_years	chr8	143281636	143281687	143281669	-	High_confidence	11	11	55	1.573390	5.298583	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280165	143281660	MINCR|ENST00000517411.1	-	143280165,143280881,143281481	143280515,143280997,143281660	0.563636
right_lobe_of_liver_female_adult_53_years	chr6	143707951	143707969	143707968	+	RAMPAGE_only	4	4	9	0.257464	3.000000	chr6	143707720	143708120	LTR|ERVL-MaLR|MSTA	-	chr6	143678172	143712336	PHACTR2|ENST00000545919.1	+	143678172,143712015	143678209,143712336	0.666667
right_lobe_of_liver_female_adult_53_years	chr9	129495803	129495826	129495825	+	High_confidence	4	5	15	0.429106	3.773557	chr9	129495725	129495901	SINE|MIR|MIRc	-	chr9	129496008	129503597	LINC00963|ENST00000622120.1	+	129496008,129503322	129496088,129503597	0.866667
right_lobe_of_liver_female_adult_53_years	chr3	142684063	142684107	142684076	+	RAMPAGE_only	8	8	20	0.572142	3.787144	chr3	142683987	142684094	LINE|RTE-BovB|MamRTE1	+	chr3	142689629	142698438	PLS1|ENST00000483507.1	+	142689629,142694468,142697952	142689813,142694547,142698438	0.700000
right_lobe_of_liver_female_adult_53_years	chr15	30493733	30493758	30493757	+	RAMPAGE_only	9	9	17	0.486321	3.030639	chr15	30493661	30493815	DNA|hAT-Charlie|MER20	+	chr15	30484543	30507623	AC127502.1|ENST00000564861.1	+	30484543,30493588,30507376	30484686,30493816,30507623	0.705882
right_lobe_of_liver_female_adult_53_years	chr7	99742778	99742791	99742779	-	RAMPAGE_only	12	20	30	0.858213	4.351823	chr7	99742673	99742814	DNA|hAT-Charlie|Charlie22a	-	chr7	99705043	99735877	STRG.44969.3	-	99705043,99707811,99709034,99710731,99713468,99714554,99715757,99717176,99717525,99720312,99722295,99731058,99735022,99735806	99705595,99707974,99709261,99710892,99713535,99714682,99715906,99717265,99717639,99720412,99722348,99731152,99735184,99735877	0.533333
right_lobe_of_liver_female_adult_53_years	chr11	60182532	60182554	60182550	-	High_confidence	3	3	11	0.314678	2.846439	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.727273
right_lobe_of_liver_female_adult_53_years	chr9	121313981	121314003	121314002	+	RAMPAGE_only	4	4	14	0.400499	3.180833	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.928571
right_lobe_of_liver_female_adult_53_years	chr6	127330853	127330901	127330853	-	High_confidence	6	6	28	0.800999	4.280395	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.892857
right_lobe_of_liver_female_adult_53_years	chr2	168932377	168932400	168932399	-	RAMPAGE_only	5	6	13	0.371892	3.584963	chr2	168932007	168932368	LINE|L1|L1PA7	-	chr2	168915497	168927234	ABCB11|ENST00000648875.1	-	168915497,168924656,168927155	168915682,168924803,168927234	0.692308
right_lobe_of_liver_female_adult_53_years	chr22	39021125	39021156	39021125	+	High_confidence	5	5	19	0.543535	3.576618	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
right_lobe_of_liver_female_adult_53_years	chr9	128921939	128921975	128921939	+	High_confidence	2	2	9	0.257464	3.169925	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921969	128942038	STRG.56106.1	+	128921969,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368,128940598,128941444,128941667	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940497,128940715,128941571,128942038	1.000000
right_lobe_of_liver_female_adult_53_years	chr7	76135418	76135452	76135448	-	High_confidence	73	79	363	10.384375	6.446449	chr7	76135264	76135657	LTR|ERVL|LTR40b	+	chr7	76071468	76135473	STRG.43655.2	-	76071468,76077105,76084328,76084806,76088138,76092062,76093296,76099439,76099897,76101231,76104084,76108230,76108434,76117722,76128619,76131987,76134208,76135218	76075318,76077295,76084418,76084953,76088216,76092166,76093401,76099514,76099956,76101414,76104275,76108309,76108762,76117889,76128782,76132176,76134403,76135473	0.928375
right_lobe_of_liver_female_adult_53_years	chr9	120534019	120534032	120534031	-	RAMPAGE_only	4	4	9	0.257464	2.750000	chr9	120533823	120534313	LINE|L2|L2c	+	chr9	120406145	120536437	CDK5RAP2|ENST00000483412.5	-	120406145,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349,120487293,120491306,120518426,120524985,120527805,120528743,120529977,120536371	120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477450,120487437,120491477,120518645,120525078,120527925,120528797,120530140,120536437	0.888889
right_lobe_of_liver_female_adult_53_years	chr5	177355863	177355870	177355869	-	RAMPAGE_only	5	5	11	0.314678	2.732159	chr5	177355706	177356068	LTR|ERVL-MaLR|MLT1J2	-	chr5	177331561	177351884	LMAN2|NM_006816.2	-	177331561,177334283,177337135,177337362,177337705,177338487,177351172,177351451	177332246,177334403,177337250,177337524,177337785,177338605,177351291,177351884	0.909091
right_lobe_of_liver_female_adult_53_years	chr7	99659826	99659851	99659837	-	High_confidence	6	6	16	0.457713	3.773557	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648197	99660602	STRG.44969.25	-	99648197,99650072,99652552	99648400,99650232,99660602	0.937500
right_lobe_of_liver_female_adult_53_years	chr2	209495505	209495535	209495505	+	High_confidence	4	4	12	0.343285	3.277613	chr2	209495053	209495629	LINE|L1|L1P3	+	chr2	209495351	209710161	STRG.17166.2	+	209495351,209507591,209580035,209625052,209653141,209678571,209680749,209700276,209705579,209709913	209495629,209507641,209580100,209625129,209653432,209678685,209680827,209700338,209705727,209710161	0.833333
right_lobe_of_liver_female_adult_53_years	chr1	59309677	59309687	59309677	+	High_confidence	4	4	10	0.286071	3.121928	chr1	59309693	59309987	SINE|Alu|AluSz6	+	chr1	59309964	59626023	STRG.2341.5	+	59309964,59321535,59339957,59346246,59378748,59456960,59512310,59554123,59607802,59625987	59310176,59321750,59340069,59346398,59378837,59457076,59512439,59554227,59607910,59626023	0.700000
right_lobe_of_liver_female_adult_53_years	chr6	2990727	2990741	2990740	-	RAMPAGE_only	3	3	8	0.228857	2.521641	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.875000
right_lobe_of_liver_female_adult_53_years	chrX	9164587	9164628	9164602	-	High_confidence	31	41	90	2.574638	4.754324	chrX	9164452	9164853	LTR|ERVL-MaLR|MSTA	-	chrX	9025104	9164606	FAM9B|ENST00000472522.5	-	9025104,9025483,9027867,9029306,9030260,9032129,9032340,9032958,9082578,9162796,9164292	9025377,9025583,9027966,9029418,9030360,9032161,9032461,9033075,9082735,9162904,9164606	0.888889
right_lobe_of_liver_female_adult_53_years	chr1	51622565	51622566	51622565	+	RAMPAGE_only	8	8	10	0.286071	2.721928	chr1	51622405	51622925	LTR|ERVL-MaLR|MLT1F1	-	chr1	51617113	51776912	OSBPL9|ENST00000489990.5	+	51617113,51651990,51669433,51714002,51745535,51746709,51748368,51750144,51765821,51772069,51772604,51776832	51617221,51652041,51669512,51714079,51745631,51746757,51748398,51750195,51765981,51772182,51772723,51776912	0.600000
right_lobe_of_liver_female_adult_53_years	chr5	34502175	34502178	34502177	+	High_confidence	5	7	9	0.257464	3.000000	chr5	34501877	34502229	LTR|ERVL|LTR33	+	chr5	34502192	34503500	STRG.29895.1	+	34502192,34502936	34502466,34503500	0.888889
right_lobe_of_liver_female_adult_53_years	chr2	113184962	113184992	113184962	+	High_confidence	2	3	11	0.314678	2.921928	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.909091
right_lobe_of_liver_female_adult_53_years	chr5	96979697	96979740	96979721	+	RAMPAGE_only	2	2	10	0.286071	2.947703	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	0.900000
right_lobe_of_liver_female_adult_53_years	chr17	79732950	79732992	79732962	-	High_confidence	20	21	66	1.888068	5.287376	chr17	79732954	79733048	LINE|L1|L1ME4b	+	chr17	79732387	79733022	STRG.85118.1	-	79732387	79733022	0.893939
right_lobe_of_liver_female_adult_53_years	chr9	62897430	62897431	62897430	+	High_confidence	7	7	7	0.200250	2.807355	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62903977	STRG.53483.2	+	62897448,62903605	62897979,62903977	0.857143
right_lobe_of_liver_female_adult_53_years	chr19	40751783	40751803	40751802	-	High_confidence	31	36	70	2.002497	4.631983	chr19	40751529	40751903	LINE|L2|L2b	+	chr19	40751315	40751771	STRG.88944.1	-	40751315	40751771	0.814286
right_lobe_of_liver_female_adult_53_years	chr11	47498209	47498210	47498209	-	RAMPAGE_only	18	18	22	0.629356	3.921928	chr11	47498169	47498421	SINE|Alu|AluJr	+	chr11	47487191	47499763	CELF1|ENST00000535982.1	-	47487191,47488836,47499452	47487241,47489024,47499763	0.590909
right_lobe_of_liver_female_adult_53_years	chr14	34586235	34586268	34586235	-	RAMPAGE_only	6	6	25	0.715177	3.567040	chr14	34585901	34586200	SINE|Alu|AluSg	-	chr14	34561093	34630109	SNX6|ENST00000396526.7	-	34561093,34567685,34567853,34575755,34581560,34586229,34593044,34597549,34603347,34605595,34608029,34609637,34629906	34563175,34567771,34568013,34575842,34581600,34586305,34593150,34597645,34603471,34605717,34608140,34609742,34630109	0.920000
right_lobe_of_liver_female_adult_53_years	chr10	80344732	80344733	80344732	+	High_confidence	28	28	28	0.800999	4.423252	chr10	80344537	80344891	LTR|ERVL-MaLR|THE1A	+	chr10	80344744	80368073	DYDC2|NR_070308.1	+	80344744,80352436,80356259,80362434,80362950,80366687	80344815,80352617,80356596,80362590,80363073,80368073	0.714286
right_lobe_of_liver_female_adult_53_years	chr8	37778581	37778704	37778703	+	RAMPAGE_only	18	22	147	4.205243	3.975297	chr8	37778675	37778933	SINE|Alu|AluJo	+	chr8	37762592	37779767	PLPBP|ENST00000328195.7	+	37762592,37765525,37765710,37766279,37772754,37775338,37775917,37777972	37762758,37765633,37765746,37766355,37772889,37775481,37776016,37779767	0.986395
right_lobe_of_liver_female_adult_53_years	chr3	193614740	193614824	193614823	+	High_confidence	10	10	43	1.230105	3.503318	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.953488
right_lobe_of_liver_female_adult_53_years	chr1	28974126	28974171	28974142	+	RAMPAGE_only	3	3	17	0.486321	3.969816	chr1	28973725	28974224	LINE|CR1|L3	-	chr1	28914625	29065950	EPB41|ENST00000645184.1	+	28914625,28987430,28993329,28997214,29011864,29015691,29018223,29030399,29033092,29035825,29039253,29053103,29064981	28914768,28987905,28993542,28997319,29011907,29015767,29018442,29030487,29033245,29035923,29039426,29053312,29065950	0.588235
right_lobe_of_liver_female_adult_53_years	chr12	127129924	127129925	127129924	+	High_confidence	8	8	9	0.257464	2.500000	chr12	127129685	127129980	SINE|Alu|AluSc5	+	chr12	127130205	127150047	STRG.70204.1	+	127130205,127145711	127130258,127150047	0.666667
right_lobe_of_liver_female_adult_53_years	chr2	21788648	21788649	21788648	-	RAMPAGE_only	8	8	8	0.228857	2.500000	chr2	21787918	21790274	DNA|TcMar-Tigger|Tigger1	-	chr2	21001428	21044073	APOB|ENST00000233242.5	-	21001428,21004268,21004560,21005079,21013159,21014447,21015072,21015369,21016438,21018991,21019722,21022830,21023524,21024932,21026787,21027827,21028326,21029638,21029897,21032353,21033298,21034815,21035583,21037099,21037957,21040937,21042360,21043512,21043863	21003334,21004452,21004675,21012651,21013533,21014593,21015260,21015545,21016649,21019113,21019905,21023042,21023692,21025124,21026964,21028065,21028538,21029785,21030015,21032581,21033518,21034901,21035708,21037255,21038111,21041083,21042476,21043551,21044073	1.000000
right_lobe_of_liver_female_adult_53_years	chr3	52806921	52807085	52807084	+	RAMPAGE_only	332	367	1020	29.179235	6.189599	chr3	52807123	52807216	LINE|CR1|X7B_LINE	+	chr3	52804805	52808796	ITIH3|ENST00000493136.1	+	52804805,52806292,52806900,52807746,52808109,52808551	52806138,52806406,52807105,52807916,52808221,52808796	0.988235
right_lobe_of_liver_female_adult_53_years	chr7	90463186	90463233	90463211	+	RAMPAGE_only	12	12	41	1.172891	5.103056	chr7	90463115	90463485	LTR|ERVL-MaLR|THE1C	+	chr7	90466423	90790628	CDK14|ENST00000449528.5	+	90466423,90479227,90494366,90563734,90604217,90726566,90747680,90790572	90466513,90479274,90494430,90563863,90604249,90726812,90747775,90790628	0.585366
right_lobe_of_liver_female_adult_53_years	chr14	85934677	85934678	85934677	+	High_confidence	4	4	7	0.200250	2.521641	chr14	85934517	85934812	LTR|ERV1|LTR12F	+	chr14	85934703	85935148	STRG.75524.1	+	85934703	85935148	0.714286
right_lobe_of_liver_female_adult_53_years	chr3	12648633	12648664	12648663	-	RAMPAGE_only	7	7	20	0.572142	4.247928	chr3	12648598	12648757	SINE|Alu|AluSz6	+	chr3	12584332	12664125	RAF1|ENST00000423275.5	-	12584332,12584846,12585121,12585680,12587590,12590797,12591707,12599690,12600151,12600387,12604135,12606200,12608765,12609232,12618514,12663812	12584657,12584981,12585253,12585799,12587637,12590974,12591792,12599808,12600279,12600415,12604289,12606299,12608923,12609335,12618747,12664125	0.750000
right_lobe_of_liver_female_adult_53_years	chr2	73072193	73072215	73072193	-	High_confidence	4	4	14	0.400499	3.085055	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.571429
right_lobe_of_liver_female_adult_53_years	chr16	66943893	66944223	66944222	+	RAMPAGE_only	79	105	611	17.478934	6.340956	chr16	66944189	66944323	SINE|Alu|FLAM_A	+	chr16	66934470	66945096	CES2|NR_036684.1	+	66934470,66938036,66939216,66940221,66940436,66941123,66941505,66941767,66942104,66942647,66943298,66943838	66935976,66938241,66939358,66940355,66940695,66941222,66941646,66941848,66942249,66942785,66943371,66945096	1.000000
right_lobe_of_liver_female_adult_53_years	chr1	54200557	54200560	54200557	+	High_confidence	36	37	60	1.716426	4.894309	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.683333
right_lobe_of_liver_female_adult_53_years	chr6	31587195	31587202	31587201	+	High_confidence	15	15	24	0.686570	4.055958	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.958333
right_lobe_of_liver_female_adult_53_years	chr5	136178722	136178723	136178722	+	RAMPAGE_only	19	19	26	0.743784	3.823935	chr5	136178772	136179073	SINE|Alu|AluSx4	+	chr5	136132846	136182734	SMAD5|ENST00000545620.5	+	136132846,136153591,136160855,136163271,136172433,136174375,136177336	136132962,136154163,136161107,136163391,136172655,136174632,136182734	0.923077
right_lobe_of_liver_female_adult_53_years	chr1	11992166	11992196	11992188	+	RAMPAGE_only	4	4	24	0.686570	4.186704	chr1	11992159	11992392	SINE|MIR|MIR	-	chr1	11980311	12013508	MFN2|ENST00000235329.9	+	11980311,11981969,11989164,11992554,11996155,11997296,11998769,11998987,12001400,12001768,12001981,12003991,12004508,12004824,12005710,12006537,12007052,12009591,12011495	11980484,11982114,11989343,11992690,11996318,11997421,11998878,11999095,12001554,12001836,12002103,12004118,12004613,12004927,12005931,12006693,12007249,12009726,12013508	0.625000
right_lobe_of_liver_female_adult_53_years	chr13	50083119	50083133	50083119	+	High_confidence	35	38	68	1.945282	5.349329	chr13	50083020	50083238	SINE|MIR|MIRb	-	chr13	50082170	50107218	DLEU1|ENST00000469754.2	+	50082170,50083141,50104703	50082557,50083194,50107218	0.970588
right_lobe_of_liver_female_adult_53_years	chr7	158863386	158863409	158863408	+	RAMPAGE_only	5	6	14	0.400499	3.664498	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.928571
right_lobe_of_liver_female_adult_53_years	chr8	118356833	118356863	118356833	-	RAMPAGE_only	29	29	64	1.830854	5.369304	chr8	118356600	118357114	LINE|L2|L2b	+	chr8	118327673	118621975	SAMD12|ENST00000649198.1	-	118327673,118379559,118439831,118580714,118621938	118327966,118379700,118439961,118580893,118621975	0.546875
right_lobe_of_liver_female_adult_53_years	chr13	46097220	46097239	46097238	+	RAMPAGE_only	13	13	21	0.600749	4.201841	chr13	46096795	46098485	LTR|ERVL|ERV3-16A3_I-int	+	chr13	46052901	46113332	CPB2-AS1|ENST00000415033.2	+	46052901,46094852,46098397,46113183	46052965,46095002,46098781,46113332	0.523810
right_lobe_of_liver_female_adult_53_years	chr1	75376210	75376230	75376210	-	RAMPAGE_only	3	3	12	0.343285	3.027169	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.833333
right_lobe_of_liver_female_adult_53_years	chr9	130459505	130459506	130459505	+	High_confidence	7	7	8	0.228857	2.521641	chr9	130459449	130459734	SINE|Alu|AluSz	-	chr9	130458517	130479898	ASS1|ENST00000467695.5	+	130458517,130464110,130466724,130470833,130471484,130476870,130479715	130458589,130464167,130466799,130470904,130471515,130476961,130479898	0.750000
right_lobe_of_liver_female_adult_53_years	chr19	55280196	55280219	55280203	-	High_confidence	4	5	21	0.600749	3.621928	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.952381
right_lobe_of_liver_female_adult_53_years	chr18	70335254	70335401	70335353	+	High_confidence	119	132	326	9.325912	5.032206	chr18	70335288	70335395	DNA|hAT-Charlie|Charlie24	-	chr18	70335438	70352459	LINC01909|ENST00000584919.1	+	70335438,70336057,70336321,70351978	70335506,70336140,70336504,70352459	0.892638
right_lobe_of_liver_female_adult_53_years	chr1	6457359	6457360	6457359	+	RAMPAGE_only	4	6	7	0.200250	2.584963	chr1	6457308	6457373	LINE|CR1|L3	-	chr1	6451716	6460405	ESPN|ENST00000477679.2	+	6451716,6457183,6457360,6459998	6452096,6457263,6457372,6460405	0.857143
right_lobe_of_liver_female_adult_53_years	chr10	5199381	5199384	5199381	+	RAMPAGE_only	14	14	29	0.829606	4.651084	chr10	5199283	5200128	LTR|ERV1|LTR1A2	+	chr10	5196834	5218947	AKR1C4|NM_001818.3	+	5196834,5200180,5204376,5205756,5206274,5212615,5212993,5216710,5218717	5196951,5200348,5204493,5205834,5206397,5212725,5213159,5216793,5218947	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	17282887	17282943	17282887	+	RAMPAGE_only	2	2	15	0.429106	3.640224	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.866667
right_lobe_of_liver_female_adult_53_years	chrX	53546444	53546455	53546444	-	RAMPAGE_only	9	9	23	0.657963	4.001823	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53532504	53548052	STRG.95794.6	-	53532504,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543885,53544559,53545028,53546435,53546703,53547672	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548052	0.826087
right_lobe_of_liver_female_adult_53_years	chr2	134844425	134844439	134844425	+	High_confidence	3	3	11	0.314678	2.846439	chr2	134844348	134844776	LTR|ERVL|LTR16C	-	chr2	134844422	134902034	STRG.13876.5	+	134844422,134845232,134859260,134861968,134863394,134867578,134870964,134872468,134898340,134901797	134844471,134845277,134859357,134862018,134863631,134867672,134871060,134872641,134898439,134902034	0.909091
right_lobe_of_liver_female_adult_53_years	chr22	50387647	50387658	50387657	+	High_confidence	88	93	258	7.380630	7.010070	chr22	50387583	50387737	DNA|hAT-Blackjack|MER63B	-	chr22	50387649	50444371	STRG.94675.5	+	50387649,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50436987,50437505,50437842,50438173,50438598,50439700,50439960,50440821,50443865,50444198	50387738,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437068,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50444371	0.782946
right_lobe_of_liver_female_adult_53_years	chr10	20002839	20002840	20002839	+	RAMPAGE_only	5	5	8	0.228857	2.521641	chr10	20002558	20002860	LINE|L2|L2c	-	chr10	20043319	20280357	PLXDC2|ENST00000377238.2	+	20043319,20046868,20068169,20143294,20147783,20164467,20176998,20177327,20211668,20217425,20219063,20245344,20279702	20043418,20047015,20068239,20143417,20147902,20164567,20177094,20177409,20211729,20217576,20219102,20245505,20280357	0.875000
right_lobe_of_liver_female_adult_53_years	chr1	160350228	160350229	160350228	+	High_confidence	14	14	18	0.514928	3.852169	chr1	160350194	160350231	LINE|RTE-BovB|MamRTE1	-	chr1	160350104	160355753	NCSTN|ENST00000424645.6	+	160350104,160351287,160351695,160352053,160352886,160353159,160354117,160355654	160350250,160351372,160351805,160352206,160352991,160353237,160354290,160355753	0.944444
right_lobe_of_liver_female_adult_53_years	chr18	199274	199314	199313	+	RAMPAGE_only	9	9	23	0.657963	3.970573	chr18	199329	199945	DNA|TcMar-Tigger|Tigger17a	+	chr18	196538	211268	USP14|ENST00000578786.1	+	196538,197615,198046,199201,202879,203097,204563,209970,210385,211132	196767,197696,198132,199316,202945,203190,204692,210031,210493,211268	0.913043
right_lobe_of_liver_female_adult_53_years	chr9	36249193	36249230	36249193	-	High_confidence	2	3	12	0.343285	3.095795	chr9	36248916	36249160	SINE|MIR|MIRb	-	chr9	36214443	36249396	GNE|ENST00000539815.5	-	36214443,36216765,36218182,36219837,36222776,36223372,36227247,36229020,36233919,36236831,36246030,36249191	36215291,36217600,36218299,36220020,36222998,36223502,36227458,36229108,36234132,36236984,36246482,36249396	0.916667
right_lobe_of_liver_female_adult_53_years	chr9	101385007	101385008	101385007	-	High_confidence	37060	37700	40029	1145.113343	6.540454	chr9	101384858	101386000	LTR|ERVK|MER11A	-	chr9	101360416	101385005	BAAT|NM_001701.3	-	101360416,101368119,101370938,101384854	101363015,101368322,101371463,101385005	0.924205
right_lobe_of_liver_female_adult_53_years	chr6	88662726	88662771	88662726	+	High_confidence	7	7	22	0.629356	3.715589	chr6	88662592	88670501	LTR|ERV1|HERVE-int	+	chr6	88662493	88670799	STRG.38323.2	+	88662493,88664476	88662858,88670799	1.000000
right_lobe_of_liver_female_adult_53_years	chr8	22287747	22287748	22287747	+	RAMPAGE_only	13	16	16	0.457713	3.640224	chr8	22287710	22287808	SINE|Alu|FLAM_C	-	chr8	22279361	22355530	PIWIL2|ENST00000611073.1	+	22279361,22281119,22281376,22283033,22284161,22287527,22288541,22289846,22290232,22304020,22304783,22305926,22307932,22309960,22311111,22314327,22315028,22316244,22318169,22352958,22355348	22279584,22281207,22281515,22283240,22284272,22287645,22288666,22289927,22290346,22304209,22304868,22306016,22308073,22310074,22311300,22314429,22315145,22316333,22318275,22353212,22355530	0.750000
right_lobe_of_liver_female_adult_53_years	chr19	48868595	48868617	48868595	-	High_confidence	209	220	939	26.862061	7.554837	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.986155
right_lobe_of_liver_female_adult_53_years	chr5	150640038	150640039	150640038	+	High_confidence	5	5	8	0.228857	2.521641	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.875000
right_lobe_of_liver_female_adult_53_years	chr11	65382645	65382646	65382645	-	High_confidence	8	8	10	0.286071	3.169925	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65379452	65382645	SLC25A45|ENST00000529962.5	-	65379452,65379866,65380131,65380533,65381874,65382485	65379561,65379938,65380175,65380622,65381969,65382645	0.600000
right_lobe_of_liver_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	251	254	256	7.323416	6.139971	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.738281
right_lobe_of_liver_female_adult_53_years	chr2	189782421	189782433	189782421	-	High_confidence	3	3	8	0.228857	3.000000	chr2	189782212	189782378	LINE|L1|L1MB3	-	chr2	189770323	189783382	ORMDL1|ENST00000325795.7	-	189770323,189775564,189782421	189771902,189775716,189783382	0.875000
right_lobe_of_liver_female_adult_53_years	chr8	143558019	143558020	143558019	+	High_confidence	50	52	52	1.487569	5.143465	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.903846
right_lobe_of_liver_female_adult_53_years	chr15	40650121	40650152	40650151	+	High_confidence	22	22	136	3.890565	5.985158	chr15	40650091	40650181	LINE|L2|L2c	+	chr15	40650143	40664342	STRG.77202.2	+	40650143,40650543,40651470,40652004,40654908,40657041,40657354,40659338,40662073,40663334	40650378,40650583,40651572,40652105,40654977,40657151,40657473,40659461,40662683,40664342	0.977941
right_lobe_of_liver_female_adult_53_years	chr3	149222077	149222078	149222077	-	High_confidence	8	8	8	0.228857	3.000000	chr3	149222056	149222177	LINE|L2|L2b	+	chr3	149172498	149222055	CP|ENST00000264613.10	-	149172498,149176249,149177839,149178414,149179555,149182004,149183465,149185238,149186519,149188051,149198366,149199711,149202101,149206167,149207362,149209210,149210166,149212450,149221646	149173730,149176412,149177979,149178631,149179662,149182133,149183605,149185446,149186732,149188202,149198578,149199864,149202241,149206339,149207617,149209384,149210379,149212698,149222055	1.000000
right_lobe_of_liver_female_adult_53_years	chr8	16186271	16186273	16186271	-	High_confidence	4	8	11	0.314678	3.277613	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.909091
right_lobe_of_liver_female_adult_53_years	chr12	106120995	106120996	106120995	-	RAMPAGE_only	4	7	7	0.200250	2.807355	chr12	106120931	106121106	DNA|hAT-Charlie|MER5B	-	chr12	106063339	106140033	NUAK1|ENST00000261402.6	-	106063339,106070773,106072723,106083863,106086733,106106404,106138413	106067955,106070906,106072843,106083929,106086885,106106525,106140033	0.857143
right_lobe_of_liver_female_adult_53_years	chr3	33838228	33838300	33838232	+	RAMPAGE_only	15	15	73	2.088318	5.275728	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.917808
right_lobe_of_liver_female_adult_53_years	chr12	113399112	113399143	113399112	-	RAMPAGE_only	2	3	12	0.343285	3.251629	chr12	113398993	113399080	SINE|MIR|MIRc	-	chr12	113396639	113403886	SDS|ENST00000553112.5	-	113396639,113398514,113398706,113399111,113399555,113403767	113397392,113398606,113398846,113399151,113399710,113403886	0.666667
right_lobe_of_liver_female_adult_53_years	chr4	68668630	68668635	68668634	-	RAMPAGE_only	26	27	40	1.144284	3.605152	chr4	68668491	68668867	LTR|ERVL-MaLR|THE1D	+	chr4	68646629	68670628	UGT2B15|ENST00000338206.5	-	68646629,68654036,68655094,68663007,68668039,68669894	68647383,68654256,68655182,68663139,68668188,68670628	1.000000
right_lobe_of_liver_female_adult_53_years	chr7	38789812	38789813	38789812	-	RAMPAGE_only	17	21	24	0.686570	4.095795	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38765519	38796469	STRG.42619.2	-	38765519,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796414	38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796469	0.916667
right_lobe_of_liver_female_adult_53_years	chr2	122710201	122710218	122710208	-	High_confidence	3	4	10	0.286071	2.947703	chr2	122709864	122710164	LINE|L1|L1ME3C	-	chr2	122709004	122710191	STRG.13649.1	-	122709004,122710158	122709547,122710191	0.600000
right_lobe_of_liver_female_adult_53_years	chr9	19361943	19361945	19361944	+	RAMPAGE_only	5	8	9	0.257464	3.000000	chr9	19361992	19362295	SINE|Alu|AluSx1	+	chr9	19346727	19372598	STRG.52451.5	+	19346727,19350701,19352072,19352489,19356971,19357964,19360243,19361845,19369836,19372036	19347086,19350879,19352182,19352665,19357154,19358160,19360489,19361963,19371820,19372598	0.888889
right_lobe_of_liver_female_adult_53_years	chr11	59040935	59040953	59040952	+	High_confidence	14	14	41	1.172891	4.637801	chr11	59040636	59041061	LTR|ERV1|MER57A1	+	chr11	59040956	59050971	STRG.62560.3	+	59040956,59042694,59043499,59049716,59050121,59050556	59041186,59042814,59043607,59049843,59050299,59050971	0.804878
right_lobe_of_liver_female_adult_53_years	chr10	69217697	69217698	69217697	+	RAMPAGE_only	5	5	8	0.228857	2.807355	chr10	69217575	69217879	SINE|Alu|AluSx1	-	chr10	69220302	69267559	HKDC1|ENST00000354624.5	+	69220302,69227206,69232763,69233013,69239041,69240651,69243181,69246078,69247359,69248423,69250289,69250532,69257035,69257326,69258775,69261138,69265584,69266609	69220498,69227369,69232912,69233133,69239137,69240751,69243365,69246234,69247593,69248728,69250435,69250652,69257131,69257426,69258959,69261294,69265818,69267559	0.875000
right_lobe_of_liver_female_adult_53_years	chr12	46413622	46413659	46413625	+	RAMPAGE_only	7	7	30	0.858213	3.298695	chr12	46413542	46413678	LINE|L2|L2c	-	chr12	46441571	46495113	STRG.67815.2	+	46441571,46455011,46470152	46444361,46455141,46495113	0.566667
right_lobe_of_liver_female_adult_53_years	chr8	42542295	42542296	42542295	+	High_confidence	6	6	8	0.228857	2.807355	chr8	42542201	42542309	SINE|MIR|MIRb	+	chr8	42541795	42552997	SMIM19|NM_001135675.1	+	42541795,42546468,42548655,42552543	42542155,42546606,42548780,42552997	0.750000
right_lobe_of_liver_female_adult_53_years	chr1	159920329	159920341	159920338	-	RAMPAGE_only	8	8	18	0.514928	4.058814	chr1	159920065	159920288	LINE|CR1|L3b	-	chr1	159918106	159923717	TAGLN2|NM_001277224.1	-	159918106,159919273,159919660,159920329,159923435	159918941,159919376,159919835,159920537,159923717	1.000000
right_lobe_of_liver_female_adult_53_years	chr13	99496779	99496799	99496798	-	High_confidence	6	6	11	0.314678	3.121928	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.545455
right_lobe_of_liver_female_adult_53_years	chrX	106007840	106007853	106007845	-	High_confidence	6	7	22	0.629356	4.011365	chrX	106007706	106007800	SINE|MIR|MIRb	-	chrX	106006944	106007887	STRG.97261.1	-	106006944	106007887	0.909091
right_lobe_of_liver_female_adult_53_years	chr12	50924078	50924079	50924078	+	High_confidence	17	18	18	0.514928	3.947703	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	1.000000
right_lobe_of_liver_female_adult_53_years	chr3	190556206	190556209	190556206	+	RAMPAGE_only	15	17	26	0.743784	3.921030	chr3	190556136	190556235	LINE|L1|L1ME3	-	chr3	190563445	190609079	IL1RAP|ENST00000453359.5	+	190563445,190564288,190604127,190608994	190563532,190564353,190604413,190609079	0.923077
right_lobe_of_liver_female_adult_53_years	chr11	17282810	17282822	17282821	+	RAMPAGE_only	19	19	34	0.972641	4.741364	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.558824
right_lobe_of_liver_female_adult_53_years	chr2	199955931	199955959	199955957	+	High_confidence	2	3	10	0.286071	3.169925	chr2	199955996	199956125	LINE|L1|L1MDb	+	chr2	199955820	200008540	MAIP1|ENST00000435773.2	+	199955820,199959267,199959753,200005742,200008465	199956248,199959339,199959880,200005777,200008540	0.500000
right_lobe_of_liver_female_adult_53_years	chr6	151616824	151616826	151616825	-	High_confidence	112	146	164	4.691563	5.809067	chr6	151616642	151616992	LTR|ERVL-MaLR|MLT1A0	-	chr6	151610469	151616842	STRG.40326.1	-	151610469,151616720	151611272,151616842	0.737805
right_lobe_of_liver_female_adult_53_years	chr1	78473312	78473363	78473312	+	RAMPAGE_only	33	36	143	4.090814	4.988308	chr1	78473085	78473339	DNA|hAT-Tip100|MER45B	-	chr1	78491042	78540701	PTGFR|NM_000959.3	+	78491042,78492671,78536405	78491236,78493541,78540701	0.951049
right_lobe_of_liver_female_adult_53_years	chr2	182030747	182030784	182030773	+	High_confidence	10	10	25	0.715177	4.262692	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.760000
right_lobe_of_liver_female_adult_53_years	chr7	95412832	95412913	95412832	-	RAMPAGE_only	6	7	29	0.829606	4.159200	chr7	95412790	95412835	LINE|L2|L2a	+	chr7	95411703	95434951	STRG.44527.12	-	95411703,95416241,95424514,95434877	95412477,95416297,95424585,95434951	0.517241
right_lobe_of_liver_female_adult_53_years	chr4	85778503	85778532	85778503	+	High_confidence	6	6	28	0.800999	3.763342	chr4	85778413	85778594	SINE|MIR|MIR3	+	chr4	85778697	86002670	ARHGAP24|NM_001042669.1	+	85778697,85923647,85942065,85972035,85974887,85977569,85994582,86000478	85778965,85923770,85942273,85972168,85974961,85977691,85995657,86002670	0.821429
right_lobe_of_liver_female_adult_53_years	chr7	95377591	95377671	95377591	-	RAMPAGE_only	10	15	46	1.315926	4.271598	chr7	95376777	95379224	LINE|L1|L1P2	+	chr7	95359943	95396361	PON3|ENST00000265627.9	-	95359943,95362361,95362759,95363862,95367361,95372172,95390153,95394643,95396276	95360131,95362490,95362841,95364063,95367488,95372338,95390209,95394714,95396361	0.956522
right_lobe_of_liver_female_adult_53_years	chr4	94562550	94562591	94562571	+	RAMPAGE_only	6	8	39	1.115677	4.076103	chr4	94562452	94562686	DNA|hAT-Charlie|Charlie10	+	chr4	94523724	94665481	STRG.27279.3	+	94523724,94573350,94575615,94584985,94585564,94586407,94618003,94640275,94654459,94657426,94662421,94663977	94523875,94573393,94576034,94585003,94585737,94586444,94618191,94640450,94654640,94657547,94662537,94665481	0.871795
right_lobe_of_liver_female_adult_53_years	chr1	167966288	167966296	167966295	+	RAMPAGE_only	39	45	93	2.660460	4.567956	chr1	167966281	167966502	DNA|hAT-Charlie|MER30	+	chr1	167968489	167991339	DCAF6|ENST00000491067.1	+	167968489,167969203,167974829,167987494,167991203	167968533,167969259,167975015,167987608,167991339	0.741935
right_lobe_of_liver_female_adult_53_years	chr6	30196533	30196546	30196533	-	RAMPAGE_only	4	4	12	0.343285	3.459432	chr6	30196338	30196501	SINE|MIR|MIRc	-	chr6	30184454	30190394	TRIM26|ENST00000480999.1	-	30184454,30189166,30189417	30186558,30189199,30190394	0.916667
right_lobe_of_liver_female_adult_53_years	chr7	76134238	76134285	76134284	-	RAMPAGE_only	8	8	63	1.802247	4.336673	chr7	76133955	76134671	LINE|L1|L1MD2	+	chr7	76071468	76135473	STRG.43655.2	-	76071468,76077105,76084328,76084806,76088138,76092062,76093296,76099439,76099897,76101231,76104084,76108230,76108434,76117722,76128619,76131987,76134208,76135218	76075318,76077295,76084418,76084953,76088216,76092166,76093401,76099514,76099956,76101414,76104275,76108309,76108762,76117889,76128782,76132176,76134403,76135473	0.968254
right_lobe_of_liver_female_adult_53_years	chr11	18531498	18531499	18531498	-	RAMPAGE_only	8	8	8	0.228857	2.750000	chr11	18531380	18531509	SINE|tRNA-RTE|MamSINE1	-	chr11	18529608	18588683	UEVLD|ENST00000396197.7	-	18529608,18534329,18536405,18544622,18546879,18558227,18564891,18566346,18570213,18575346,18578723,18588612	18532487,18534453,18536469,18544796,18547050,18558330,18565010,18566482,18570377,18575412,18578808,18588683	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	58578102	58578133	58578102	-	High_confidence	25	27	101	2.889316	5.438406	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.881188
right_lobe_of_liver_female_adult_53_years	chrX	37888010	37888029	37888028	-	RAMPAGE_only	10	11	19	0.543535	3.683542	chrX	37884479	37888014	LTR|ERV1|MER41-int	-	chrX	37838835	37847637	DYNLT3|ENST00000378578.8	-	37838835,37841027,37841781,37846316,37847480	37840651,37841105,37841905,37846358,37847637	0.736842
right_lobe_of_liver_female_adult_53_years	chr1	40388737	40388738	40388737	+	RAMPAGE_only	14	14	15	0.429106	3.521641	chr1	40387671	40389155	LTR|ERV1|LTR12C	+	chr1	40387695	40393480	STRG.1346.1	+	40387695,40387854	40387802,40393480	0.866667
right_lobe_of_liver_female_adult_53_years	chr15	89112669	89112687	89112672	+	RAMPAGE_only	21	29	96	2.746281	5.560696	chr15	89112629	89112704	SINE|MIR|MIRc	+	chr15	89088429	89195751	ABHD2|ENST00000565973.5	+	89088429,89090282,89102396,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89195751	0.822917
right_lobe_of_liver_female_adult_53_years	chr10	65570509	65570529	65570521	+	High_confidence	18	33	62	1.773640	5.169146	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.532258
right_lobe_of_liver_female_adult_53_years	chr2	232845857	232845876	232845857	+	RAMPAGE_only	2	2	9	0.257464	2.750000	chr2	232845876	232846546	LINE|CR1|L3	+	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.777778
right_lobe_of_liver_female_adult_53_years	chr14	104766951	104766953	104766952	-	High_confidence	229	311	369	10.556017	7.344444	chr14	104766824	104767423	LTR|ERV1|LTR71B	-	chr14	104748209	104766972	STRG.76174.1	-	104748209,104756405,104766842	104748773,104757420,104766972	0.834688
right_lobe_of_liver_female_adult_53_years	chr12	91179371	91179392	91179383	-	High_confidence	5	5	14	0.400499	3.546594	chr12	91179305	91179397	SINE|MIR|MIRb	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.928571
right_lobe_of_liver_female_adult_53_years	chr5	173790811	173790821	173790811	-	High_confidence	3	3	11	0.314678	3.121928	chr5	173790732	173790899	DNA|hAT-Tip100|MER115	-	chr5	173786927	173790925	LINC01485|ENST00000523617.5	-	173786927,173787688,173790635,173790808	173787247,173787745,173790727,173790925	0.636364
right_lobe_of_liver_female_adult_53_years	chr5	81301426	81301442	81301426	-	High_confidence	5	6	10	0.286071	3.321928	chr5	81301404	81301487	LINE|L2|L2b	+	chr5	81235758	81301523	CKMT2-AS1|ENST00000512287.1	-	81235758,81301286	81236122,81301523	0.500000
right_lobe_of_liver_female_adult_53_years	chr3	98733221	98733247	98733230	+	High_confidence	6	6	19	0.543535	3.932138	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	1.000000
right_lobe_of_liver_female_adult_53_years	chr5	139364647	139364674	139364647	+	RAMPAGE_only	2	2	9	0.257464	3.000000	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.555556
right_lobe_of_liver_female_adult_53_years	chr2	34677552	34677553	34677552	+	High_confidence	4	5	6	0.171643	2.584963	chr2	34677192	34677662	LTR|ERV1|LTR2B	+	chr2	34677554	34737468	LINC01320|ENST00000625995.2	+	34677554,34710451,34713578,34732447,34735646,34737320	34677927,34710513,34713773,34732557,34735686,34737468	1.000000
right_lobe_of_liver_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	28	28	30	0.858213	3.819802	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.833333
right_lobe_of_liver_female_adult_53_years	chr14	39064912	39064980	39064912	-	RAMPAGE_only	10	10	37	1.058462	4.537845	chr14	39064766	39064897	SINE|Alu|FLAM_C	-	chr14	39031918	39088723	SEC23A|ENST00000537403.5	-	39031918,39039030,39040731,39042785,39045162,39048651,39055142,39061764,39063323,39064912,39067172,39074414,39075934,39085761,39086928,39087523	39033328,39039096,39040887,39042872,39045324,39048729,39055296,39061871,39063413,39064993,39067296,39074530,39076093,39085906,39087008,39088723	0.918919
right_lobe_of_liver_female_adult_53_years	chr20	3795750	3795789	3795788	+	High_confidence	20	21	129	3.690315	6.120333	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.984496
right_lobe_of_liver_female_adult_53_years	chr22	46171330	46171346	46171345	+	RAMPAGE_only	3	3	6	0.171643	2.584963	chr22	46171297	46171902	LINE|L2|L2a	-	chr22	46176747	46235403	PPARA|ENST00000402126.1	+	46176747,46198344,46215172,46218262,46219811,46231791,46235132	46176836,46198591,46215333,46218401,46220014,46232239,46235403	0.500000
right_lobe_of_liver_female_adult_53_years	chr3	39154613	39154614	39154613	-	High_confidence	9	9	11	0.314678	3.321928	chr3	39154504	39154649	LINE|L2|L2c	+	chr3	39141850	39154602	CSRNP1|NM_001320560.1	-	39141850,39144136,39144996,39146477,39154496	39144044,39144451,39145256,39146722,39154602	0.727273
right_lobe_of_liver_female_adult_53_years	chr14	94735759	94735760	94735759	-	RAMPAGE_only	556	557	557	15.934151	6.034725	chr14	94735486	94735994	LTR|ERVL-MaLR|MLT1H1	+	chr14	94378375	94390693	SERPINA1|ENST00000393088.8	-	94378375,94379463,94380870,94382591,94388559,94388800,94390456	94378640,94379611,94381141,94383241,94388663,94389010,94390693	0.998205
right_lobe_of_liver_female_adult_53_years	chr7	27617808	27617859	27617841	-	RAMPAGE_only	7	8	43	1.230105	5.021928	chr7	27617476	27617882	LINE|L1|L1M2	+	chr7	27525474	27662868	HIBADH|ENST00000428288.2	-	27525474,27531191,27538340,27542966,27629370,27632335,27662697	27526372,27531348,27538417,27543100,27629492,27632445,27662868	0.558140
right_lobe_of_liver_female_adult_53_years	chr19	10825220	10825221	10825220	+	RAMPAGE_only	7	8	11	0.314678	3.027169	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	1.000000
right_lobe_of_liver_female_adult_53_years	chr7	95377551	95377560	95377559	-	RAMPAGE_only	3	3	6	0.171643	2.584963	chr7	95376777	95379224	LINE|L1|L1P2	+	chr7	95359960	95365913	PON3|ENST00000492800.1	-	95359960,95362361,95362759,95363862	95360131,95362490,95362841,95365913	0.666667
right_lobe_of_liver_female_adult_53_years	chr6	63516436	63516479	63516442	+	RAMPAGE_only	14	17	53	1.516176	4.950064	chr6	63516454	63516579	SINE|MIR|MIR	+	chr6	63521745	63583377	PTP4A1|ENST00000648894.1	+	63521745,63527818,63532336,63576435,63578436,63578897,63579256,63580056	63521826,63528084,63532530,63576985,63578529,63579028,63579331,63583377	0.660377
right_lobe_of_liver_female_adult_53_years	chr11	118212190	118212208	118212207	-	High_confidence	3	3	8	0.228857	2.807355	chr11	118212116	118212308	SINE|MIR|MIRb	-	chr11	118205658	118212470	JAML|ENST00000531536.1	-	118205658,118210486,118212406	118205991,118210712,118212470	0.625000
right_lobe_of_liver_female_adult_53_years	chr17	75017080	75017106	75017105	+	RAMPAGE_only	4	6	13	0.371892	3.251629	chr17	75017134	75017319	SINE|Alu|AluSp	+	chr17	75020228	75021261	MRPL58|ENST00000583772.1	+	75020228,75020487,75020920	75020395,75020657,75021261	0.923077
right_lobe_of_liver_female_adult_53_years	chr5	42810765	42810768	42810767	-	RAMPAGE_only	4	6	9	0.257464	3.000000	chr5	42810474	42810757	SINE|Alu|AluSg	-	chr5	42806582	42811889	SELENOP|ENST00000510650.5	-	42806582,42811835	42807108,42811889	0.555556
right_lobe_of_liver_female_adult_53_years	chr9	34649507	34649511	34649510	+	High_confidence	4	4	10	0.286071	2.725481	chr9	34649448	34649570	LINE|RTE-BovB|MamRTE1	-	chr9	34648921	34650583	GALT|ENST00000488412.2	+	34648921,34650368	34649564,34650583	0.700000
right_lobe_of_liver_female_adult_53_years	chr1	184568398	184568409	184568408	+	High_confidence	41	43	95	2.717674	4.691723	chr1	184568204	184568449	LINE|L1|L1MB3	-	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.936842
right_lobe_of_liver_female_adult_53_years	chr1	51297912	51297946	51297912	-	High_confidence	4	4	14	0.400499	3.546594	chr1	51297625	51298239	LINE|L2|L2a	+	chr1	51287985	51297960	TTC39A|ENST00000534098.1	-	51287985,51288838,51290004,51290513,51294390,51297790	51288280,51288955,51290119,51290625,51294511,51297960	0.642857
right_lobe_of_liver_female_adult_53_years	chr1	97904659	97904679	97904675	-	RAMPAGE_only	10	10	35	1.001248	4.657882	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.600000
right_lobe_of_liver_female_adult_53_years	chr2	87469947	87469950	87469947	+	High_confidence	6	6	10	0.286071	2.921928	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87470078	87471008	STRG.12468.1	+	87470078	87471008	0.900000
right_lobe_of_liver_female_adult_53_years	chr11	74697513	74697527	74697513	-	High_confidence	3	3	11	0.314678	2.721928	chr11	74697389	74697636	LINE|L2|L2c	+	chr11	74696428	74697694	CHRDL2|ENST00000529912.5	-	74696428,74697204,74697600	74696585,74697297,74697694	0.909091
right_lobe_of_liver_female_adult_53_years	chr2	159428358	159428367	159428358	-	RAMPAGE_only	3	5	10	0.286071	3.321928	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.500000
right_lobe_of_liver_female_adult_53_years	chr5	150137405	150137421	150137408	-	High_confidence	36	37	83	2.374389	5.860541	chr5	150137246	150137416	SINE|MIR|MIR3	+	chr5	150134856	150137437	PDGFRB|ENST00000517957.1	-	150134856,150135554,150137007,150137399	150135016,150135878,150137053,150137437	0.686747
right_lobe_of_liver_female_adult_53_years	chr22	30425620	30425621	30425620	+	High_confidence	4	4	7	0.200250	2.584963	chr22	30425519	30425631	SINE|MIR|MIRb	-	chr22	30425622	30429054	MTFP1|NM_016498.4	+	30425622,30426716,30427170,30428461	30425946,30426844,30427403,30429054	0.857143
right_lobe_of_liver_female_adult_53_years	chr20	648107	648527	648526	-	RAMPAGE_only	19	19	254	7.266202	6.293435	chr20	648445	648597	SINE|MIR|MIRb	-	chr20	646614	653370	SRXN1|NM_080725.2	-	646614,652975	648917,653370	0.996063
right_lobe_of_liver_female_adult_53_years	chr6	160101168	160101208	160101207	+	RAMPAGE_only	18	27	57	1.630604	5.126492	chr6	160101091	160101276	LINE|L1|L1MEd	+	chr6	160061630	160106507	IGF2R|ENST00000650503.1	+	160061630,160061752,160062531,160063414,160064400,160064803,160068248,160069867,160071909,160072764,160073212,160073756,160075846,160078200,160079579,160080128,160083949,160084994,160088032,160089915,160096438,160102518,160103745,160104673	160061646,160061928,160062619,160063630,160064531,160064901,160068385,160070058,160072036,160072884,160073469,160073975,160075996,160078362,160079787,160080275,160084184,160085131,160089253,160090103,160096625,160102671,160103815,160106507	1.000000
right_lobe_of_liver_female_adult_53_years	chr3	128626784	128626822	128626810	-	RAMPAGE_only	9	9	33	0.944034	4.515320	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.969697
right_lobe_of_liver_female_adult_53_years	chr11	67886471	67886518	67886517	+	High_confidence	20	20	102	2.917924	4.710869	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.960784
right_lobe_of_liver_female_adult_53_years	chr1	43247846	43247900	43247846	-	RAMPAGE_only	4	4	29	0.829606	4.418157	chr1	43247136	43247843	LTR|ERV1|LOR1-int	-	chr1	43194683	43250391	EBNA1BP2|ENST00000474566.1	-	43194683,43206345,43211449,43215265,43250218	43194949,43206392,43211567,43215393,43250391	0.689655
right_lobe_of_liver_female_adult_53_years	chr20	35713470	35713471	35713470	-	High_confidence	7	7	8	0.228857	2.807355	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.875000
right_lobe_of_liver_female_adult_53_years	chr12	126936636	126936650	126936649	-	RAMPAGE_only	3	3	8	0.228857	2.521641	chr12	126936467	126937286	LTR|ERV1|LTR28B	-	chr12	126915202	127060397	LINC02405|ENST00000512624.6	-	126915202,126922706,126923029,126975838,127000555,127031866,127060086	126915449,126922959,126923205,126975917,127000650,127032066,127060397	0.875000
right_lobe_of_liver_female_adult_53_years	chr9	62376790	62376801	62376790	-	High_confidence	3	3	6	0.171643	2.584963	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.833333
right_lobe_of_liver_female_adult_53_years	chr11	1673126	1673154	1673153	+	RAMPAGE_only	3	3	8	0.228857	2.521641	chr11	1672484	1674391	LINE|L1|L1MB8	-	chr11	1671274	1677638	STRG.60958.1	+	1671274	1677638	0.875000
right_lobe_of_liver_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	41	41	41	1.172891	3.259600	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
right_lobe_of_liver_female_adult_53_years	chr5	154835290	154835291	154835290	-	High_confidence	11	12	12	0.343285	3.095795	chr5	154835289	154835424	DNA|hAT-Charlie|MER5B	+	chr5	154822526	154835088	FAXDC2|ENST00000522825.1	-	154822526,154823386,154830800,154834842	154822577,154823592,154830922,154835088	0.500000
right_lobe_of_liver_female_adult_53_years	chr11	114405707	114405750	114405749	+	RAMPAGE_only	3	3	12	0.343285	2.845351	chr11	114405747	114405830	LINE|CR1|X6B_LINE	-	chr11	114400673	114408123	RBM7|ENST00000545678.1	+	114400673,114405705,114407444	114400767,114405799,114408123	0.916667
right_lobe_of_liver_female_adult_53_years	chr6	137724161	137724185	137724184	-	High_confidence	12	12	40	1.144284	4.753056	chr6	137724061	137724183	LINE|L2|L2b	-	chr6	137719144	137724198	STRG.39745.1	-	137719144,137723946	137719518,137724198	0.850000
right_lobe_of_liver_female_adult_53_years	chr15	57402037	57402038	57402037	+	RAMPAGE_only	13	13	13	0.371892	3.334679	chr15	57402062	57402472	LTR|ERVL-MaLR|MSTB	+	chr15	57376504	57550715	STRG.77898.1	+	57376504,57402660,57405965,57406972,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57402714,57406064,57407102,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550715	0.923077
right_lobe_of_liver_female_adult_53_years	chr1	78223683	78223687	78223683	+	RAMPAGE_only	3	3	6	0.171643	2.584963	chr1	78223537	78223690	LINE|L2|L2b	-	chr1	78229598	78293890	MGC27382|ENST00000436742.5	+	78229598,78250183,78251493,78292479,78293078,78293590	78229729,78251010,78251877,78292631,78293277,78293890	0.666667
right_lobe_of_liver_female_adult_53_years	chrX	147937497	147937529	147937518	+	RAMPAGE_only	3	3	11	0.314678	3.321928	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.545455
right_lobe_of_liver_female_adult_53_years	chr5	38881717	38881741	38881731	+	RAMPAGE_only	2	2	11	0.314678	3.121928	chr5	38881676	38881753	SINE|tRNA-Deu|AmnSINE2	+	chr5	38845998	38886739	OSMR|NM_001323504.1	+	38845998,38869031,38876200,38881592,38883826,38885348,38886038	38846387,38869117,38876373,38881764,38884111,38885484,38886739	0.909091
right_lobe_of_liver_female_adult_53_years	chr11	65438629	65438902	65438714	+	RAMPAGE_only	54	60	377	10.784874	5.665252	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65423637	65445540	STRG.62879.5	+	65423637,65434274	65434178,65445540	0.978780
right_lobe_of_liver_female_adult_53_years	chr11	71999614	71999642	71999615	+	High_confidence	8	14	48	1.373140	4.980389	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	1.000000
right_lobe_of_liver_female_adult_53_years	chr22	23700803	23700804	23700803	-	RAMPAGE_only	9	9	13	0.371892	3.084963	chr22	23700074	23701270	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.846154
right_lobe_of_liver_female_adult_53_years	chr9	91210555	91210593	91210592	+	High_confidence	19	35	125	3.575887	4.906340	chr9	91210576	91210702	SINE|MIR|MIR	+	chr9	91210563	91211590	STRG.54411.1	+	91210563	91211590	0.952000
right_lobe_of_liver_female_adult_53_years	chr9	124351541	124351709	124351708	+	RAMPAGE_only	19	20	174	4.977634	5.417457	chr9	124351688	124351931	SINE|MIR|MIRc	+	chr9	124292940	124352438	NEK6|ENST00000394199.6	+	124292940,124301935,124312508,124313922,124321458,124326329,124327337,124339570,124347708,124350836	124293013,124302054,124312649,124313985,124321569,124326438,124327445,124339665,124347822,124352438	0.988506
right_lobe_of_liver_female_adult_53_years	chr11	65444346	65444416	65444346	+	RAMPAGE_only	10	10	81	2.317175	5.524748	chr11	65444390	65444497	SINE|MIR|MIR1_Amn	+	chr11	65423637	65445540	STRG.62879.5	+	65423637,65434274	65434178,65445540	0.987654
right_lobe_of_liver_female_adult_53_years	chr17	56912591	56912644	56912630	-	High_confidence	7	7	24	0.686570	3.914866	chr17	56912611	56912799	SINE|MIR|MIRb	+	chr17	56891582	56913472	TRIM25|ENST00000572021.5	-	56891582,56895342,56895520,56895925,56899114,56901418,56904254,56908467,56912104,56913391	56892229,56895441,56895604,56895952,56899180,56901578,56904488,56908563,56912165,56913472	0.833333
right_lobe_of_liver_female_adult_53_years	chr12	131008040	131008048	131008040	+	RAMPAGE_only	3	3	10	0.286071	2.725481	chr12	131007952	131008178	SINE|MIR|MIR	+	chr12	131002498	131141460	ADGRD1|ENST00000376682.8	+	131002498,131003184,131004185,131005971,131014198,131076800,131084539,131104830,131105753,131108723,131118384,131120846,131131724,131136036,131136972,131138136,131139167	131002837,131003302,131004296,131006047,131014340,131076874,131084663,131104934,131105865,131108877,131118451,131120913,131131816,131136163,131137014,131138229,131141460	0.800000
right_lobe_of_liver_female_adult_53_years	chr12	9114078	9114098	9114078	-	RAMPAGE_only	9	14	27	0.772392	3.930270	chr12	9113988	9114066	SINE|MIR|MIRc	-	chr12	9077768	9115860	STRG.66679.4	-	9077768,9079243,9079638,9080093,9089199,9089901,9090355,9091200,9093464,9094972,9095538,9098606,9099380,9101143,9101446,9104238,9106235,9106490,9107523,9109320,9109866,9110313,9112158,9112376,9113359,9115075	9077857,9079331,9079815,9080177,9089251,9090023,9090482,9091429,9093579,9095084,9095700,9098756,9099523,9101207,9101674,9104400,9106345,9106605,9107644,9109405,9110035,9110334,9112211,9112536,9113539,9115860	0.962963
right_lobe_of_liver_female_adult_53_years	chr9	125201248	125201281	125201280	+	High_confidence	7	7	29	0.829606	4.521641	chr9	125200941	125201383	LINE|L2|L2b	-	chr9	125201246	125234048	STRG.55920.4	+	125201246,125203007,125207563,125213369,125220538,125227909,125232595,125233687	125201378,125203066,125207721,125213522,125220700,125228059,125232745,125234048	0.827586
right_lobe_of_liver_female_adult_53_years	chr19	11356802	11356803	11356802	+	High_confidence	6	6	6	0.171643	2.584963	chr19	11356842	11356927	SINE|MIR|MIRc	+	chr19	11357695	11359894	PLPPR2|ENST00000588196.1	+	11357695,11359531	11357739,11359894	0.500000
right_lobe_of_liver_female_adult_53_years	chr19	51795208	51795245	51795244	+	High_confidence	5	5	9	0.257464	2.641604	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	1.000000
right_lobe_of_liver_female_adult_53_years	chr2	181954491	181954526	181954491	+	High_confidence	32	33	198	5.664205	5.984144	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.893939
right_lobe_of_liver_female_adult_53_years	chr1	166850123	166850124	166850123	+	RAMPAGE_only	34	36	45	1.287319	4.924969	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
right_lobe_of_liver_female_adult_53_years	chr3	194486602	194486632	194486631	-	High_confidence	3	4	9	0.257464	3.000000	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.888889
right_lobe_of_liver_female_adult_53_years	chr10	104254340	104254358	104254357	+	High_confidence	3	3	11	0.314678	2.921928	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254193	104267464	GSTO1|NM_001191003.1	+	104254193,104255162,104259575,104262978,104266083,104267251	104254499,104255271,104259798,104263077,104266190,104267464	0.818182
right_lobe_of_liver_female_adult_53_years	chr2	218313452	218313505	218313504	-	RAMPAGE_only	18	18	33	0.944034	4.392583	chr2	218313410	218313517	LINE|L1|L1MC4a	-	chr2	218279334	218292586	TMBIM1|ENST00000440422.5	-	218279334,218280025,218281939,218285762,218292465	218279353,218280126,218282181,218285938,218292586	0.696970
right_lobe_of_liver_female_adult_53_years	chr3	44439948	44439949	44439948	-	RAMPAGE_only	6	6	8	0.228857	2.521641	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431719	44477670	ZNF445|ENST00000396077.7	-	44431719,44449512,44450446,44450867,44451313,44455120,44458243,44477590	44448739,44449623,44450573,44450962,44451482,44455696,44458364,44477670	0.625000
right_lobe_of_liver_female_adult_53_years	chr21	33931495	33931499	33931498	+	High_confidence	3	5	10	0.286071	2.921928	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931213	33971186	LINC00649|ENST00000400353.6	+	33931213,33945809,33969236	33931267,33945895,33971186	0.500000
right_lobe_of_liver_female_adult_53_years	chr2	187513638	187513653	187513652	-	High_confidence	4	4	9	0.257464	3.169925	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	0.777778
right_lobe_of_liver_female_adult_53_years	chr17	47067498	47067534	47067498	-	High_confidence	313	340	1175	33.613335	5.993737	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.955745
right_lobe_of_liver_female_adult_53_years	chr19	44914321	44914322	44914321	+	High_confidence	316	321	378	10.813481	5.964230	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.783069
right_lobe_of_liver_female_adult_53_years	chr11	114295557	114295558	114295557	+	High_confidence	6	6	8	0.228857	2.500000	chr11	114295416	114295728	SINE|Alu|AluY	-	chr11	114295812	114312516	NNMT|NM_006169.2	+	114295812,114297950,114312044	114296710,114298158,114312516	0.500000
right_lobe_of_liver_female_adult_53_years	chr1	169726050	169726058	169726050	-	RAMPAGE_only	7	7	12	0.343285	2.550341	chr1	169726016	169726301	DNA|hAT-Charlie|Charlie8	-	chr1	169722640	169733659	SELE|ENST00000367775.5	-	169722640,169725728,169725906,169726698,169727348,169727738,169729185,169729487,169731834,169732614,169733575	169724509,169725801,169725928,169726806,169727525,169727927,169729374,169729673,169731942,169732998,169733659	0.916667
right_lobe_of_liver_female_adult_53_years	chr1	147173171	147173226	147173193	+	High_confidence	3	3	19	0.543535	3.932138	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.894737
right_lobe_of_liver_female_adult_53_years	chr2	29114149	29114177	29114149	+	High_confidence	2	2	14	0.400499	2.950212	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.928571
right_lobe_of_liver_female_adult_53_years	chr11	77175252	77175303	77175277	+	High_confidence	4	4	28	0.800999	4.384517	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.857143
right_lobe_of_liver_female_adult_53_years	chr11	1664007	1664046	1664040	+	High_confidence	10	10	30	0.858213	4.593069	chr11	1664080	1664495	LINE|L1|L1MB3	+	chr11	1663819	1669326	STRG.60956.3	+	1663819,1663975,1666434,1667962	1663859,1664135,1667748,1669326	0.933333
right_lobe_of_liver_female_adult_53_years	chr3	194340355	194340711	194340355	-	RAMPAGE_only	78	82	665	19.023717	6.423744	chr3	194339739	194340505	LTR|ERV1|MER4E	-	chr3	194339764	194351328	CPN2|NM_001291988.1	-	194339764,194351241	194342702,194351328	0.998496
right_lobe_of_liver_female_adult_53_years	chr1	227244039	227244043	227244039	-	RAMPAGE_only	9	9	15	0.429106	3.106891	chr1	227243888	227244587	LINE|L1|L1ME3	+	chr1	227193650	227317047	CDC42BPA|ENST00000478573.6	-	227193650,227199556,227213135,227254063,227317004	227193934,227199652,227213219,227254155,227317047	0.866667
right_lobe_of_liver_female_adult_53_years	chr16	20575574	20575575	20575574	-	High_confidence	8	8	8	0.228857	3.000000	chr16	20575366	20575775	LTR|ERVL|MLT2A1	-	chr16	20559270	20576277	ACSM2B|ENST00000566384.5	-	20559270,20564668,20575421,20576206	20559447,20564853,20575549,20576277	0.750000
right_lobe_of_liver_female_adult_53_years	chr4	103085384	103085428	103085384	-	RAMPAGE_only	2	3	16	0.457713	4.000000	chr4	103085151	103085336	DNA|hAT-Charlie|MER58A	-	chr4	103079478	103099808	BDH2|ENST00000464039.5	-	103079478,103082080,103082870,103085348,103091176,103092599,103095202,103096182,103098643,103099782	103079755,103082173,103082929,103086540,103091285,103092696,103095281,103096274,103099400,103099808	0.875000
right_lobe_of_liver_female_adult_53_years	chr12	102923573	102923574	102923573	-	RAMPAGE_only	19	19	19	0.543535	3.260828	chr12	102923568	102923702	LINE|L1|L1MC5	-	chr12	102836884	102917603	PAH|ENST00000553106.5	-	102836884,102840399,102843645,102844335,102846894,102851686,102852814,102855135,102866595,102877461,102894734,102912790,102917070	102839218,102840515,102843779,102844431,102846951,102851756,102852950,102855332,102866663,102877550,102894918,102912898,102917603	1.000000
right_lobe_of_liver_female_adult_53_years	chr16	30354679	30354684	30354679	-	High_confidence	10	11	20	0.572142	4.247928	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.950000
right_lobe_of_liver_female_adult_53_years	chr11	65439264	65439298	65439264	+	RAMPAGE_only	7	12	45	1.287319	5.141250	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65423637	65445540	STRG.62879.5	+	65423637,65434274	65434178,65445540	0.977778
right_lobe_of_liver_female_adult_53_years	chr13	52661555	52661558	52661555	+	RAMPAGE_only	6	6	11	0.314678	2.845351	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
right_lobe_of_liver_female_adult_53_years	chr8	32927967	32927984	32927976	+	High_confidence	62	69	207	5.921668	5.972593	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927980	33045918	STRG.48290.1	+	32927980,32996200,33041634,33044366	32928093,32996355,33041771,33045918	0.859903
right_lobe_of_liver_female_adult_53_years	chr8	143039246	143039267	143039266	+	High_confidence	5	6	17	0.486321	3.499228	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.941176
right_lobe_of_liver_female_adult_53_years	chr14	21061610	21061615	21061614	+	High_confidence	35	35	60	1.716426	5.280226	chr14	21061636	21062216	LTR?|LTR?|MamRep1151	+	chr14	21061228	21076456	STRG.73118.4	+	21061228,21068853,21073044,21073931,21075331,21075644,21076359	21061663,21070399,21073242,21075180,21075499,21075765,21076456	0.950000
right_lobe_of_liver_female_adult_53_years	chr16	48352334	48352515	48352334	+	RAMPAGE_only	65	66	207	5.921668	5.459134	chr16	48352363	48352642	SINE|Alu|AluSz6	+	chr16	48244387	48362737	STRG.81026.1	+	48244387,48252130,48256609,48258617,48261423,48262777,48270015,48277337,48296014,48299661,48303171,48334215,48347506,48348099,48351580,48354118,48361476,48361853	48244621,48252365,48256741,48258740,48261587,48262872,48270274,48277479,48296165,48299788,48303305,48334358,48347714,48348290,48354086,48356710,48361759,48362737	0.975845
right_lobe_of_liver_female_adult_53_years	chr14	94657907	94657908	94657907	-	RAMPAGE_only	124	129	129	3.690315	5.480447	chr14	94657425	94658900	Retroposon|SVA|SVA_C	+	chr14	94378375	94390693	SERPINA1|ENST00000393088.8	-	94378375,94379463,94380870,94382591,94388559,94388800,94390456	94378640,94379611,94381141,94383241,94388663,94389010,94390693	0.961240
right_lobe_of_liver_female_adult_53_years	chr4	39515085	39515086	39515085	-	RAMPAGE_only	8	8	10	0.286071	2.503258	chr4	39514983	39515137	SINE|Alu|AluJb	-	chr4	39498787	39526557	UGDH|ENST00000506179.5	-	39498787,39503874,39504416,39505236,39505617,39508565,39509759,39510352,39510660,39514082,39521350,39526383	39500253,39503985,39504508,39505370,39505748,39508660,39509907,39510550,39510861,39514184,39521519,39526557	0.900000
right_lobe_of_liver_female_adult_53_years	chr21	8849990	8850025	8850024	+	RAMPAGE_only	2	2	8	0.228857	2.500000	chr21	8850073	8850241	SINE|MIR|MIRb	+	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	1.000000
right_lobe_of_liver_female_adult_53_years	chr12	109594766	109594792	109594791	+	High_confidence	242	274	880	25.174242	6.185716	chr12	109594704	109594847	LTR|ERVL-MaLR|MLT1K	-	chr12	109594718	109597261	STRG.69720.8	+	109594718,109595027,109596425	109594903,109595181,109597261	0.973864
right_lobe_of_liver_female_adult_53_years	chr9	108885871	108885872	108885871	-	RAMPAGE_only	15	15	16	0.457713	3.506891	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108879460	108889684	ELP1|ENST00000467959.1	-	108879460,108880051,108881704,108882124,108889331,108889644	108879557,108880165,108881765,108882187,108889393,108889684	0.625000
right_lobe_of_liver_female_adult_53_years	chr1	1655410	1655411	1655410	-	RAMPAGE_only	23	23	32	0.915427	4.750000	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.500000
right_lobe_of_liver_female_adult_53_years	chr14	101731413	101731418	101731413	+	High_confidence	24	25	40	1.144284	4.753226	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.900000
right_lobe_of_liver_female_adult_53_years	chr2	55618850	55618870	55618850	-	High_confidence	7	7	17	0.486321	4.000000	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.941176
right_lobe_of_liver_female_adult_53_years	chr19	58312223	58312265	58312242	+	RAMPAGE_only	5	5	15	0.429106	3.807355	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.866667
right_lobe_of_liver_female_adult_53_years	chr3	197299271	197299317	197299316	-	High_confidence	12	12	28	0.800999	4.430632	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.892857
right_lobe_of_liver_female_adult_53_years	chr15	89106232	89106258	89106257	+	RAMPAGE_only	4	4	11	0.314678	3.277613	chr15	89106031	89106311	SINE|Alu|AluSq2	+	chr15	89088429	89195751	ABHD2|ENST00000565973.5	+	89088429,89090282,89102396,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89195751	0.727273
right_lobe_of_liver_female_adult_53_years	chr7	77766648	77766659	77766658	+	RAMPAGE_only	6	6	20	0.572142	4.221928	chr7	77766568	77766744	DNA|hAT-Charlie|Charlie30a	+	chr7	77765490	77773446	RSBN1L|ENST00000468035.1	+	77765490,77768660,77773146	77765632,77768803,77773446	0.650000
right_lobe_of_liver_female_adult_53_years	chr6	43025273	43025319	43025307	+	High_confidence	14	15	49	1.401748	5.095176	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.877551
right_lobe_of_liver_female_adult_53_years	chr13	80074324	80074357	80074324	+	High_confidence	20	24	84	2.402996	5.832561	chr13	80074227	80075072	LTR|ERV1|LTR1A2	+	chr13	80074345	80075163	STRG.72042.1	+	80074345	80075163	0.952381
right_lobe_of_liver_female_adult_53_years	chr5	34244753	34244816	34244753	-	High_confidence	7	7	61	1.745033	5.435813	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244796	STRG.29963.4	-	34175821,34179012,34182679,34218294,34239374,34244615	34175957,34179097,34182867,34218450,34239448,34244796	0.639344
right_lobe_of_liver_female_adult_53_years	chr8	102275542	102275571	102275542	-	RAMPAGE_only	5	5	14	0.400499	3.521641	chr8	102275368	102275493	LINE|L1|L1ME3E	-	chr8	102271193	102276820	UBR5|ENST00000521566.1	-	102271193,102272528,102275520,102275707,102276773	102271245,102272772,102275619,102275828,102276820	1.000000
right_lobe_of_liver_female_adult_53_years	chr4	152412488	152412529	152412494	-	High_confidence	8	8	29	0.829606	4.134336	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.931034
right_lobe_of_liver_female_adult_53_years	chr1	57231439	57231467	57231441	-	High_confidence	12	23	50	1.430355	5.010431	chr1	57231261	57231513	LINE|L2|L2c	+	chr1	57071575	57231467	STRG.2275.1	-	57071575,57072282,57136542,57145289,57231367	57071641,57072414,57136641,57145429,57231467	0.520000
right_lobe_of_liver_female_adult_53_years	chr1	23838619	23838644	23838643	-	High_confidence	7	9	29	0.829606	4.458591	chr1	23837780	23838651	LTR|ERV1|LTR1A2	+	chr1	23801886	23838620	HMGCL|ENST00000374487.6	-	23801886,23804399,23808134,23810735,23814189,23816674,23817475,23820509,23826083,23838063	23802564,23804525,23808323,23810799,23814338,23816770,23817583,23820593,23826183,23838620	0.862069
right_lobe_of_liver_female_adult_53_years	chr22	35662233	35662339	35662338	+	RAMPAGE_only	56	57	169	4.834599	4.460564	chr22	35662325	35662742	LTR|ERV1|MER4A1	+	chr22	35648394	35668409	APOL6|ENST00000409652.4	+	35648394,35656378,35658614	35648623,35656475,35668409	0.988166
right_lobe_of_liver_female_adult_53_years	chr16	29842046	29842080	29842079	+	RAMPAGE_only	4	4	10	0.286071	2.947703	chr16	29842127	29842270	SINE|Alu|AluJb	+	chr16	29830514	29848039	MVP|NM_001293204.1	+	29830514,29830877,29833732,29833934,29835703,29836721,29840177,29841595,29841914,29844492,29845862,29846157,29847345,29847761	29830674,29831073,29833856,29834066,29835798,29836958,29840459,29841840,29842112,29844879,29845979,29846253,29847385,29848039	0.900000
right_lobe_of_liver_female_adult_53_years	chr7	101218389	101218414	101218396	-	High_confidence	19	20	49	1.401748	5.395222	chr7	101218298	101218575	SINE|Alu|AluJr	-	chr7	101217422	101218366	PLOD3|ENST00000481461.1	-	101217422,101218279	101217899,101218366	0.714286
right_lobe_of_liver_female_adult_53_years	chr8	73358701	73358730	73358729	+	High_confidence	5	9	19	0.543535	4.169925	chr8	73358752	73359123	LTR|ERVL-MaLR|MLT1A1	+	chr8	73358912	73362788	AC111149.2|ENST00000518355.1	+	73358912,73362322	73359045,73362788	0.736842
right_lobe_of_liver_female_adult_53_years	chr9	19126419	19126447	19126424	-	RAMPAGE_only	42	58	154	4.405492	6.415275	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19115769	19127475	STRG.52417.3	-	19115769,19118320,19119649,19120879,19123564,19126113,19126396	19116649,19118455,19119831,19121165,19123647,19126309,19127475	0.961039
right_lobe_of_liver_female_adult_53_years	chr7	11194708	11194727	11194708	+	High_confidence	71	87	236	6.751274	6.091730	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11194731	11248868	STRG.41424.2	+	11194731,11197309,11244257,11248292	11194784,11197444,11244479,11248868	0.652542
right_lobe_of_liver_female_adult_53_years	chr3	154140252	154140253	154140252	+	RAMPAGE_only	46	48	60	1.716426	5.068767	chr3	154140194	154140347	SINE|MIR|MIRb	-	chr3	154121415	154256548	ARHGEF26|ENST00000496710.5	+	154121415,154121941,154124409,154129573,154149388,154152771,154187684,154191288,154194643,154217868,154225855,154240369,154253115,154254784,154255330	154121519,154123075,154124449,154129719,154149445,154152932,154187837,154191418,154194718,154217958,154226010,154240579,154253183,154254824,154256548	0.950000
right_lobe_of_liver_female_adult_53_years	chr17	10730357	10730372	10730357	-	High_confidence	4	4	13	0.371892	3.251629	chr17	10730332	10730634	SINE|Alu|AluSx1	+	chr17	10713321	10730329	TMEM220|NM_001004313.1	-	10713321,10723269,10725010,10726203,10729030,10729779	10715588,10723329,10725134,10726264,10729060,10730329	0.923077
right_lobe_of_liver_female_adult_53_years	chr2	170489052	170489076	170489069	+	RAMPAGE_only	14	16	37	1.058462	4.124676	chr2	170489103	170489251	SINE|MIR|MIR3	+	chr2	170180148	170499808	MYO3B|ENST00000484338.6	+	170180148,170199207,170200149,170214378,170214728,170217318,170235990,170335384,170369221,170382015,170383072,170383709,170386188,170387105,170391519,170392380,170400187,170401480,170402847,170404246,170405544,170407714,170443966,170463367,170466505,170498591,170499645	170180181,170199391,170200284,170214483,170214828,170217395,170236136,170335450,170369377,170382112,170383189,170383814,170386272,170387308,170391618,170392495,170400314,170401691,170402995,170404400,170405633,170407844,170444046,170463445,170466711,170498703,170499808	0.783784
right_lobe_of_liver_female_adult_53_years	chr4	184814103	184814104	184814103	-	RAMPAGE_only	5	6	7	0.200250	2.584963	chr4	184814008	184814313	SINE|Alu|AluY	+	chr4	184755594	184812259	ACSL1|NM_001286708.1	-	184755594,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621,184768315,184770398,184773080,184773662,184773842,184776483,184776883,184780331,184783926,184788616,184803319,184812159	184757265,184757706,184757920,184760500,184762523,184763255,184764925,184765986,184766756,184768450,184770476,184773154,184773714,184773875,184776662,184776983,184780433,184783991,184788731,184803546,184812259	0.714286
right_lobe_of_liver_female_adult_53_years	chr2	218398232	218398233	218398232	+	High_confidence	8	8	11	0.314678	3.321928	chr2	218398216	218398343	SINE|MIR|MIRb	+	chr2	218398337	218405941	CTDSP1|NM_001206878.1	+	218398337,218401563,218402113,218402348,218403034,218403231,218404296	218398479,218401712,218402215,218402405,218403127,218403417,218405941	0.727273
right_lobe_of_liver_female_adult_53_years	chr1	100268234	100268281	100268280	+	RAMPAGE_only	95	95	162	4.634349	4.381913	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266288	100292769	STRG.4045.2	+	100266288,100266523,100268151,100270556,100273393,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100268295,100270680,100274965,100275723,100277316,100285322,100287203,100292769	1.000000
right_lobe_of_liver_female_adult_53_years	chr3	22105678	22105680	22105678	-	High_confidence	17	25	34	0.972641	4.779094	chr3	22105437	22105885	LTR|ERVL|MLT2B1	-	chr3	22103984	22105448	STRG.19324.1	-	22103984	22105448	0.617647
right_lobe_of_liver_female_adult_53_years	chr12	128905265	128905308	128905272	+	RAMPAGE_only	5	5	39	1.115677	4.814517	chr12	128905189	128905299	DNA|hAT-Charlie|Charlie5	-	chr12	128864135	128983739	GLT1D1|ENST00000537468.1	+	128864135,128875913,128888638,128899235,128906906,128912423,128914932,128926358,128927104,128945325,128947337,128957544,128982928	128864179,128876062,128888744,128899287,128906954,128912460,128914989,128926454,128927154,128945369,128947458,128957643,128983739	0.615385
right_lobe_of_liver_female_adult_53_years	chr2	230513289	230513305	230513304	-	High_confidence	72	75	170	4.863206	6.095008	chr2	230513152	230513502	LTR|ERV1|LTR44	-	chr2	230497462	230513538	STRG.17831.2	-	230497462,230510269,230512797	230498808,230510339,230513538	0.788235
right_lobe_of_liver_female_adult_53_years	chr17	59619874	59619923	59619894	+	High_confidence	1992	2311	7062	202.023294	5.543795	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.982724
right_lobe_of_liver_female_adult_53_years	chr9	35755200	35755218	35755200	+	RAMPAGE_only	6	7	15	0.429106	3.521641	chr9	35755094	35755321	SINE|MIR|MIRb	+	chr9	35749309	35786762	STRG.53020.1	+	35749309,35749736,35750242,35750657,35750839,35751265,35751626,35751955,35752650,35752940,35772162,35786646	35749408,35749871,35750379,35750741,35750989,35751412,35751754,35752145,35752880,35757197,35772376,35786762	0.933333
right_lobe_of_liver_female_adult_53_years	chr7	99823524	99823525	99823524	+	High_confidence	50	58	64	1.830854	5.076259	chr7	99822867	99824498	LTR|ERV1|MER52A	+	chr7	99823531	99824015	STRG.44979.1	+	99823531	99824015	0.859375
right_lobe_of_liver_female_adult_53_years	chr5	27472404	27472451	27472450	+	RAMPAGE_only	9	9	20	0.572142	3.821928	chr5	27472487	27472711	LTR|ERV1|MER61-int	+	chr5	27475603	27476116	STRG.29823.1	+	27475603	27476116	0.950000
right_lobe_of_liver_female_adult_53_years	chr3	126198013	126198026	126198025	-	High_confidence	5	5	10	0.286071	2.641604	chr3	126197802	126198236	LTR|ERV1|MER57A1	-	chr3	126158466	126197994	ALDH1L1|ENST00000509952.5	-	126158466,126160852,126197734	126158639,126161002,126197994	0.800000
right_lobe_of_liver_female_adult_53_years	chr9	121326231	121326236	121326235	+	RAMPAGE_only	12	12	19	0.543535	4.058814	chr9	121325898	121326350	LTR|ERVL|LTR86A1	-	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.578947
right_lobe_of_liver_female_adult_53_years	chr10	16437357	16437358	16437357	+	High_confidence	5	5	8	0.228857	2.750000	chr10	16437334	16437622	SINE|Alu|AluJo	-	chr10	16436983	16513737	PTER|ENST00000378000.5	+	16436983,16437356,16484336,16486351,16505019,16511045	16437047,16437490,16484816,16486617,16505160,16513737	1.000000
right_lobe_of_liver_female_adult_53_years	chr6	88662481	88662482	88662481	+	High_confidence	284	296	311	8.896806	6.749991	chr6	88662198	88662592	LTR|ERV1|LTR2C	+	chr6	88662493	88670799	STRG.38323.2	+	88662493,88664476	88662858,88670799	0.781350
right_lobe_of_liver_female_adult_53_years	chr9	129493499	129493528	129493527	+	High_confidence	5	6	17	0.486321	3.750000	chr9	129493487	129493626	LINE|L2|L2b	-	chr9	129493576	129513683	LINC00963|ENST00000623185.3	+	129493576,129503322,129504891,129513418	129493595,129503672,129505043,129513683	0.647059
right_lobe_of_liver_female_adult_53_years	chr12	46444160	46444161	46444160	+	RAMPAGE_only	9	9	13	0.371892	3.238901	chr12	46444007	46444183	DNA|hAT-Charlie|MER5B	-	chr12	46384106	46652579	LOC100288798|NR_125381.1	+	46384106,46387746,46652389	46384161,46387972,46652579	0.538462
right_lobe_of_liver_female_adult_53_years	chr12	118138993	118139010	118138993	+	High_confidence	7	7	20	0.572142	3.826875	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.850000
right_lobe_of_liver_female_adult_53_years	chr4	186260300	186260310	186260308	-	High_confidence	120	145	241	6.894310	5.791351	chr4	186259848	186260334	DNA|hAT-Charlie|MER1A	-	chr4	186257534	186260297	STRG.29361.1	-	186257534,186260025	186258438,186260297	0.680498
right_lobe_of_liver_female_adult_53_years	chr7	76135279	76135281	76135279	-	High_confidence	5	8	10	0.286071	2.947703	chr7	76135264	76135657	LTR|ERVL|LTR40b	+	chr7	76071468	76135473	STRG.43655.2	-	76071468,76077105,76084328,76084806,76088138,76092062,76093296,76099439,76099897,76101231,76104084,76108230,76108434,76117722,76128619,76131987,76134208,76135218	76075318,76077295,76084418,76084953,76088216,76092166,76093401,76099514,76099956,76101414,76104275,76108309,76108762,76117889,76128782,76132176,76134403,76135473	0.900000
right_lobe_of_liver_female_adult_53_years	chr19	58306086	58306087	58306086	+	High_confidence	5	5	7	0.200250	2.807355	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.571429
right_lobe_of_liver_female_adult_53_years	chr5	133089588	133089693	133089677	+	RAMPAGE_only	108	155	270	7.723915	6.364696	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.996296
right_lobe_of_liver_female_adult_53_years	chr6	75891297	75891305	75891304	+	RAMPAGE_only	5	6	9	0.257464	2.947703	chr6	75891350	75891661	SINE|Alu|AluY	+	chr6	75890209	75908560	MYO6|ENST00000430435.1	+	75890209,75891227,75892529,75894813,75895230,75907604,75908495	75890265,75891306,75892690,75894840,75895260,75907708,75908560	0.666667
right_lobe_of_liver_female_adult_53_years	chr20	5010312	5010313	5010312	-	High_confidence	8	8	8	0.228857	2.750000	chr20	5010113	5010529	LTR|ERVL|MLT2B2	-	chr20	4852355	5010293	SLC23A2|ENST00000379333.5	-	4852355,4859288,4861947,4862777,4867769,4869905,4873935,4874575,4883641,4884752,4885820,4899554,4902441,4912879,4932454,4970792,5010181	4857204,4859384,4862085,4862907,4867875,4870053,4874092,4874696,4883823,4884823,4885909,4899712,4902558,4912978,4932716,4970919,5010293	1.000000
right_lobe_of_liver_female_adult_53_years	chr1	11058814	11058880	11058814	-	RAMPAGE_only	8	9	32	0.915427	4.366729	chr1	11058682	11058785	SINE|MIR|MIRc	-	chr1	11054588	11060024	SRM|ENST00000376957.6	-	11054588,11054961,11055780,11056010,11056603,11058799,11059224,11059776	11054885,11055084,11055926,11056094,11056757,11058892,11059345,11060024	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	65382789	65382835	65382789	-	High_confidence	5	5	15	0.429106	3.807355	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65379456	65382673	SLC25A45|ENST00000524438.5	-	65379456,65379866,65380131,65380533,65381874,65382485	65379561,65379938,65380175,65380632,65381969,65382673	0.600000
right_lobe_of_liver_female_adult_53_years	chr3	9377860	9377861	9377860	+	RAMPAGE_only	4	7	7	0.200250	2.807355	chr3	9377910	9378251	LINE|CR1|CR1_Mam	+	chr3	9383179	9384870	THUMPD3|ENST00000464045.1	+	9383179,9384211,9384523	9383309,9384335,9384870	0.857143
right_lobe_of_liver_female_adult_53_years	chr19	50016091	50016145	50016120	-	RAMPAGE_only	4	4	28	0.800999	3.873141	chr19	50016092	50016166	DNA|hAT-Ac|OldhAT1	-	chr19	49994862	50020647	VRK3|ENST00000599342.5	-	49994862,50000789,50007568,50009235,50015731,50016023,50020584	49994919,50000854,50007826,50009385,50015793,50016163,50020647	0.928571
right_lobe_of_liver_female_adult_53_years	chr2	44067927	44067951	44067950	-	High_confidence	3	3	9	0.257464	2.750000	chr2	44066368	44068379	Retroposon|SVA|SVA_D	-	chr2	44067176	44068209	STRG.11174.1	-	44067176	44068209	0.666667
right_lobe_of_liver_female_adult_53_years	chr2	233012592	233012638	233012637	+	High_confidence	40	43	180	5.149277	4.612406	chr2	233012609	233012781	DNA|hAT-Tip100|MER45A	+	chr2	233012613	233015885	AC106876.1|ENST00000409905.1	+	233012613,233013139,233015706	233012969,233013247,233015885	0.972222
right_lobe_of_liver_female_adult_53_years	chr2	118143019	118143020	118143019	-	RAMPAGE_only	9	9	14	0.400499	3.180833	chr2	118137000	118143020	LINE|L1|L1PA2	-	chr2	118132127	118186386	THORLNC|ENST00000414886.5	-	118132127,118176764,118183086,118186230	118132372,118176905,118183322,118186386	0.857143
right_lobe_of_liver_female_adult_53_years	chr7	99656652	99656726	99656675	-	RAMPAGE_only	5	5	38	1.087070	4.790270	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648197	99660602	STRG.44969.25	-	99648197,99650072,99652552	99648400,99650232,99660602	0.973684
right_lobe_of_liver_female_adult_53_years	chr1	193473049	193473082	193473079	+	High_confidence	28	28	82	2.345782	5.239929	chr1	193473114	193473705	LTR|ERVL|MLT2F	+	chr1	193473072	193923743	STRG.7227.5	+	193473072,193886320,193899286	193473376,193886417,193923743	0.548780
right_lobe_of_liver_female_adult_53_years	chr9	120395627	120395651	120395642	-	RAMPAGE_only	5	5	21	0.600749	3.426367	chr9	120395586	120396182	DNA|TcMar-Tigger|Tigger13a	+	chr9	120389195	120401019	CDK5RAP2|ENST00000474262.5	-	120389195,120389740,120394511,120400741	120389292,120389787,120394638,120401019	0.714286
right_lobe_of_liver_female_adult_53_years	chr1	148900909	148900917	148900909	+	RAMPAGE_only	8	10	18	0.514928	3.947703	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148889783	148932725	PDE4DIP|ENST00000612094.1	+	148889783,148929196,148932112	148889894,148931923,148932725	0.722222
right_lobe_of_liver_female_adult_53_years	chr15	32677531	32677571	32677539	+	High_confidence	48	50	168	4.805992	6.295796	chr15	32677294	32677614	LTR?|LTR?|MamRep605	+	chr15	32677546	32692308	STRG.76659.1	+	32677546,32679765,32684559,32691709	32677744,32679915,32684669,32692308	0.642857
right_lobe_of_liver_female_adult_53_years	chr12	18149152	18149180	18149175	-	RAMPAGE_only	10	10	30	0.858213	4.513153	chr12	18149117	18149291	LTR|ERVL-MaLR|MLT1I	+	chr12	18081363	18320107	RERGL|ENST00000541632.1	-	18081363,18084516,18085619,18088899,18140791,18143183,18285304,18320055	18081473,18084665,18085693,18088956,18140873,18143293,18285401,18320107	0.666667
right_lobe_of_liver_female_adult_53_years	chr7	99659500	99659589	99659530	-	RAMPAGE_only	7	8	46	1.315926	5.186393	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648197	99660602	STRG.44969.25	-	99648197,99650072,99652552	99648400,99650232,99660602	1.000000
right_lobe_of_liver_female_adult_53_years	chrX	150828305	150828319	150828305	-	RAMPAGE_only	2	2	6	0.171643	2.584963	chrX	150828273	150828523	SINE|MIR|MIRb	-	chrX	150776901	150831248	CD99L2|ENST00000418547.2	-	150776901,150793690,150795205,150795417,150814861,150816006,150831230	150777482,150793756,150795289,150795486,150814936,150816078,150831248	0.666667
right_lobe_of_liver_female_adult_53_years	chr5	42825888	42825905	42825895	-	High_confidence	128	173	413	11.814730	6.373159	chr5	42825250	42825999	LTR|ERV1|LTR1F	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.973366
right_lobe_of_liver_female_adult_53_years	chr1	56905928	56905949	56905928	+	RAMPAGE_only	4	4	8	0.228857	2.750000	chr1	56905861	56905956	SINE|MIR|MIRb	+	chr1	56854805	56918221	C8A|ENST00000361249.3	+	56854805,56867608,56874948,56876061,56881444,56883480,56885926,56906666,56907955,56912402,56917564	56854978,56867702,56875093,56876209,56881634,56883681,56886167,56906792,56908113,56912625,56918221	0.750000
right_lobe_of_liver_female_adult_53_years	chr11	111794326	111794328	111794326	+	High_confidence	12	17	19	0.543535	3.503258	chr11	111794284	111794583	SINE|Alu|AluJr	-	chr11	111794228	111794756	STRG.64899.1	+	111794228	111794756	0.526316
right_lobe_of_liver_female_adult_53_years	chr1	112935972	112936001	112935972	-	High_confidence	18	19	44	1.258712	4.489877	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	0.954545
right_lobe_of_liver_female_adult_53_years	chr13	110507403	110507435	110507434	+	High_confidence	12	12	34	0.972641	4.741364	chr13	110507382	110507519	LINE|RTE-X|L4_A_Mam	-	chr13	110507443	110512133	COL4A2|ENST00000463084.1	+	110507443,110507934,110511933	110507635,110508221,110512133	0.852941
right_lobe_of_liver_female_adult_53_years	chr7	150322656	150322680	150322656	+	High_confidence	8	9	27	0.772392	3.426616	chr7	150322211	150322830	LTR|ERV1|MER41B	+	chr7	150322638	150325919	LRRC61|ENST00000471872.1	+	150322638,150325840	150323212,150325919	0.888889
right_lobe_of_liver_female_adult_53_years	chr21	29077476	29077501	29077486	+	High_confidence	3	3	17	0.486321	3.875000	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.529412
right_lobe_of_liver_female_adult_53_years	chr11	61529403	61529456	61529409	-	High_confidence	14	14	64	1.830854	4.795707	chr11	61529333	61529542	SINE|MIR|MIRb	-	chr11	61515312	61529723	STRG.62673.5	-	61515312,61523074,61523826,61524362,61527914,61529361	61518731,61523274,61523941,61524532,61528185,61529723	0.781250
right_lobe_of_liver_female_adult_53_years	chr7	87519327	87519395	87519327	-	High_confidence	6	7	41	1.172891	5.103056	chr7	87519184	87519318	SINE|5S-Deu-L2|AmnSINE1	-	chr7	87505901	87518963	ABCB1|ENST00000475929.5	-	87505901,87509274,87515230,87516508,87518880	87506043,87509481,87515428,87516665,87518963	0.975610
right_lobe_of_liver_female_adult_53_years	chr11	72758533	72758630	72758552	-	High_confidence	8	19	83	2.374389	4.716285	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72759309	STARD10|ENST00000537351.5	-	72754728,72755121,72755700,72757766,72758529,72759233	72754782,72755142,72755753,72757884,72758633,72759309	0.722892
right_lobe_of_liver_female_adult_53_years	chr11	321249	321258	321249	-	High_confidence	2	3	8	0.228857	2.807355	chr11	321227	321340	SINE|Alu|AluY	+	chr11	319772	321340	IFITM3|ENST00000526811.4	-	319772,320564,321223	319990,320772,321340	0.875000
right_lobe_of_liver_female_adult_53_years	chr5	172958908	172958919	172958918	+	High_confidence	9	11	19	0.543535	3.572431	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.947368
right_lobe_of_liver_female_adult_53_years	chr17	60887046	60887094	60887093	+	High_confidence	6	6	18	0.514928	4.058814	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.944444
right_lobe_of_liver_female_adult_53_years	chr6	26127695	26127702	26127701	+	RAMPAGE_only	5	5	12	0.343285	3.027169	chr6	26127720	26128012	SINE|Alu|AluSx1	+	chr6	26124202	26139084	HIST1H2AC|ENST00000602637.1	+	26124202,26138053	26124633,26139084	0.916667
right_lobe_of_liver_female_adult_53_years	chr1	103561320	103561342	103561320	+	High_confidence	2	2	6	0.171643	2.584963	chr1	103561258	103561490	SINE|Alu|AluSq	-	chr1	103561756	103572229	AMY2B|ENST00000435302.5	+	103561756,103565434,103571556,103572109	103562094,103565594,103571770,103572229	0.500000
right_lobe_of_liver_female_adult_53_years	chr17	1744421	1744505	1744421	+	RAMPAGE_only	2	2	27	0.772392	4.053661	chr17	1744211	1744513	SINE|Alu|AluSp	+	chr17	1743025	1755268	SERPINF2|ENST00000382061.4	+	1743025,1744991,1745174,1745332,1745707,1747018,1747308,1748597,1752585,1754121	1743076,1745058,1745213,1745395,1745909,1747162,1747512,1748740,1752790,1755268	0.851852
right_lobe_of_liver_female_adult_53_years	chr19	7642282	7642317	7642316	+	High_confidence	10	11	24	0.686570	4.142915	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.625000
right_lobe_of_liver_female_adult_53_years	chr7	150769823	150769852	150769851	-	RAMPAGE_only	16	20	53	1.516176	5.208868	chr7	150769734	150770037	SINE|Alu|AluJr	+	chr7	150764366	150767581	STRG.47023.3	-	150764366,150766311	150765970,150767581	0.641509
right_lobe_of_liver_female_adult_53_years	chr1	21551266	21551311	21551272	+	High_confidence	91	96	537	15.362009	6.729748	chr1	21551216	21551436	LINE|L2|L2c	-	chr1	21551278	21578012	ALPL|ENST00000374832.5	+	21551278,21553977,21560625,21561096,21563109,21564040,21568103,21570304,21573664,21575732,21576521,21577382	21551428,21554142,21560745,21561212,21563284,21564216,21568247,21570374,21573799,21575924,21576641,21578012	0.761639
right_lobe_of_liver_female_adult_53_years	chr2	199956074	199956076	199956075	+	High_confidence	10	11	16	0.457713	3.323231	chr2	199955996	199956125	LINE|L1|L1MDb	+	chr2	199955820	200008540	MAIP1|ENST00000435773.2	+	199955820,199959267,199959753,200005742,200008465	199956248,199959339,199959880,200005777,200008540	0.750000
right_lobe_of_liver_female_adult_53_years	chr19	12800944	12801045	12800944	-	High_confidence	7	7	65	1.859461	4.911001	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.923077
right_lobe_of_liver_female_adult_53_years	chr2	108451059	108451086	108451085	+	RAMPAGE_only	6	7	15	0.429106	3.664498	chr2	108451073	108451151	LINE|RTE-BovB|MamRTE1	-	chr2	108449883	108472899	GCC2|ENST00000409896.1	+	108449883,108451027,108452398,108468979,108469650,108472826	108449994,108451112,108452466,108469084,108472116,108472899	0.800000
right_lobe_of_liver_female_adult_53_years	chr3	33130021	33130063	33130062	+	RAMPAGE_only	7	7	19	0.543535	3.642150	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	1.000000
right_lobe_of_liver_female_adult_53_years	chr4	184625761	184625762	184625761	-	High_confidence	71	71	80	2.288567	5.595981	chr4	184625604	184626600	LTR|ERVK|MER11B	-	chr4	184625239	184625915	STRG.29284.1	-	184625239	184625915	0.537500
right_lobe_of_liver_female_adult_53_years	chr7	99659650	99659656	99659654	-	High_confidence	5	9	18	0.514928	3.852169	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648197	99660602	STRG.44969.25	-	99648197,99650072,99652552	99648400,99650232,99660602	0.944444
right_lobe_of_liver_female_adult_53_years	chr15	89133449	89133473	89133456	+	RAMPAGE_only	13	13	36	1.029855	4.786426	chr15	89133190	89133834	LINE|L1|L1MC5	-	chr15	89116503	89183373	ABHD2|ENST00000562073.1	+	89116503,89151676,89155366,89175811,89183331	89116521,89151852,89155534,89175995,89183373	0.888889
right_lobe_of_liver_female_adult_53_years	chr9	111284874	111284875	111284874	-	High_confidence	10	10	10	0.286071	2.921928	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	1.000000
right_lobe_of_liver_female_adult_53_years	chr4	73419280	73419281	73419280	+	High_confidence	5	6	7	0.200250	2.521641	chr4	73419250	73419383	SINE|MIR|MIRb	-	chr4	73419280	73421217	ALB|ENST00000508932.5	+	73419280,73420253,73421091	73419455,73420321,73421217	0.714286
right_lobe_of_liver_female_adult_53_years	chr11	119046423	119046464	119046463	-	RAMPAGE_only	3	3	12	0.343285	2.918296	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	1.000000
right_lobe_of_liver_female_adult_53_years	chr10	94683332	94683358	94683344	+	High_confidence	5	8	28	0.800999	4.236369	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_001128925.1	+	94683493,94687769,94688124,94694916,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94720537,94724533,94733438,94736190	0.964286
right_lobe_of_liver_female_adult_53_years	chr1	113759863	113759895	113759894	-	High_confidence	3	3	13	0.371892	3.084963	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.538462
right_lobe_of_liver_female_adult_53_years	chr4	103425074	103425076	103425074	+	High_confidence	96	106	145	4.148029	5.219313	chr4	103424943	103425102	LTR|Gypsy|LTR81B	+	chr4	103425058	103453755	STRG.27390.2	+	103425058,103436934,103453599	103425185,103437046,103453755	0.937931
right_lobe_of_liver_female_adult_53_years	chr15	89200308	89200812	89200465	+	RAMPAGE_only	78	111	1010	28.893164	6.633856	chr15	89200250	89200502	Retroposon|SVA|SVA_F	-	chr15	89088149	89202360	ABHD2|NM_007011.7	+	89088149,89090282,89102499,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89202360	0.997030
right_lobe_of_liver_female_adult_53_years	chr12	26832767	26832780	26832779	-	High_confidence	28	28	49	1.401748	5.022474	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.938776
right_lobe_of_liver_female_adult_53_years	chr2	218645205	218645218	218645205	-	RAMPAGE_only	5	5	12	0.343285	3.084963	chr2	218645106	218645348	SINE|MIR|MIR	-	chr2	218638144	218659502	ZNF142|ENST00000433921.5	-	218638144,218640663,218642027,218646170,218648634,218650358,218651700,218656149,218658700,218658979,218659368	218638808,218640769,218645064,218646348,218649459,218650526,218651822,218656463,218658801,218659130,218659502	1.000000
right_lobe_of_liver_female_adult_53_years	chr2	43486671	43486679	43486671	-	High_confidence	5	5	15	0.429106	3.506891	chr2	43486640	43486924	DNA|hAT-Charlie|MER102b	-	chr2	43286984	43486672	STRG.11153.6	-	43286984,43291695,43292103,43292833,43320445,43344121,43397970,43428099,43430212,43485233,43486436	43287061,43291768,43292222,43293213,43320540,43344237,43398139,43428231,43430302,43485325,43486672	0.933333
right_lobe_of_liver_female_adult_53_years	chr2	232551066	232551106	232551103	+	High_confidence	8	8	44	1.258712	4.817053	chr2	232551133	232551224	SINE|MIR|MIRb	+	chr2	232550806	232567205	EIF4E2|ENST00000454501.1	+	232550806,232556415,232557883,232564246,232566828,232567077	232551218,232556530,232558018,232564351,232566981,232567205	1.000000
right_lobe_of_liver_female_adult_53_years	chr4	71803927	71803928	71803927	-	High_confidence	259	312	313	8.954020	6.669550	chr4	71803761	71803898	SINE|MIR|MIRc	-	chr4	71741692	71804041	GC|NM_001204307.1	-	71741692,71746150,71752517,71754410,71754977,71756711,71758041,71763407,71763803,71765431,71768300,71769330,71783960,71803925	71741870,71746205,71752650,71754508,71755107,71756914,71758171,71763502,71763936,71765643,71768433,71769400,71784054,71804041	0.993610
right_lobe_of_liver_female_adult_53_years	chr3	42770599	42770600	42770599	+	High_confidence	7233	7252	7413	212.064384	5.753981	chr3	42769529	42771022	LTR|ERV1|LTR12C	+	chr3	42770611	42773635	LOC729083|NR_122070.1	+	42770611,42773204	42771077,42773635	0.971536
right_lobe_of_liver_female_adult_53_years	chr19	58306115	58306174	58306141	+	High_confidence	6	6	37	1.058462	4.440351	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.540541
right_lobe_of_liver_female_adult_53_years	chr1	43525091	43525092	43525091	+	High_confidence	135	136	194	5.549776	6.460887	chr1	43524527	43525317	LINE|L2|L2c	-	chr1	43525186	43553519	PTPRF|ENST00000496043.5	+	43525186,43528656,43538197,43545030,43553491	43525257,43528756,43538277,43545166,43553519	0.850515
right_lobe_of_liver_female_adult_53_years	chr20	18794077	18794086	18794077	+	High_confidence	4	4	9	0.257464	2.725481	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	59040900	59040909	59040908	+	High_confidence	6	6	14	0.400499	3.521641	chr11	59040636	59041061	LTR|ERV1|MER57A1	+	chr11	59040956	59050971	STRG.62560.3	+	59040956,59042694,59043499,59049716,59050121,59050556	59041186,59042814,59043607,59049843,59050299,59050971	0.928571
right_lobe_of_liver_female_adult_53_years	chr20	37345083	37345127	37345083	+	High_confidence	6	6	22	0.629356	4.061482	chr20	37345047	37345146	SINE|MIR|MIR3	+	chr20	37344715	37405182	STRG.91189.1	+	37344715,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170,37404418	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37404028,37405182	0.954545
right_lobe_of_liver_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	198	308	705	20.168001	5.269684	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.971631
right_lobe_of_liver_female_adult_53_years	chr3	136625270	136625313	136625270	-	RAMPAGE_only	138	140	218	6.236346	6.249777	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.880734
right_lobe_of_liver_female_adult_53_years	chr16	75318107	75318117	75318116	-	RAMPAGE_only	9	11	21	0.600749	4.037401	chr16	75317828	75318154	SINE|Alu|AluSx	+	chr16	75293697	75306545	CFDP1|ENST00000570103.5	-	75293697,75305023,75306386	75294042,75305182,75306545	0.904762
right_lobe_of_liver_female_adult_53_years	chr12	109591266	109591286	109591266	+	RAMPAGE_only	2	2	12	0.343285	2.913977	chr12	109591205	109591326	DNA|hAT-Ac|OldhAT1	+	chr12	109587860	109597262	MVK|ENST00000540353.1	+	109587860,109591240,109595027,109596425	109590861,109591357,109595181,109597262	0.916667
right_lobe_of_liver_female_adult_53_years	chr13	40350408	40350446	40350410	-	RAMPAGE_only	41	46	90	2.574638	5.648467	chr13	40350403	40350604	SINE|MIR|MIR3	+	chr13	40284776	40403766	LINC00598|ENST00000636192.1	-	40284776,40343956,40350108,40403598	40285666,40344205,40350302,40403766	0.855556
right_lobe_of_liver_female_adult_53_years	chr2	210540626	210540643	210540626	+	RAMPAGE_only	9	9	17	0.486321	3.734522	chr2	210540595	210540724	SINE|MIR|MIRb	-	chr2	210556537	210679107	CPS1|ENST00000233072.9	+	210556537,210573297,210576345,210577420,210579713,210582616,210588057,210590105,210590799,210591830,210592878,210594507,210595486,210599371,210600554,210602201,210605101,210606730,210608360,210612116,210616422,210637701,210639149,210639995,210642483,210647862,210648472,210650362,210654024,210656524,210658598,210660484,210663122,210668185,210674901,210675727,210677006,210677886	210556859,210573407,210576490,210577510,210579770,210582709,210588147,210590234,210590906,210591969,210592956,210594606,210595582,210599561,210600712,210602330,210605246,210606941,210608559,210612293,210616541,210637843,210639215,210640059,210642665,210648057,210648540,210650438,210654102,210656632,210658688,210660655,210663197,210668284,210674961,210675840,210677136,210679107	1.000000
right_lobe_of_liver_female_adult_53_years	chr15	71747815	71747852	71747851	+	RAMPAGE_only	43	44	69	1.973889	5.264334	chr15	71747409	71747892	LTR|ERV1|LTR44	-	chr15	71660454	71767651	THSD4|ENST00000567838.1	+	71660454,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71766698	71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71767651	0.681159
right_lobe_of_liver_female_adult_53_years	chr2	227534913	227534933	227534913	+	RAMPAGE_only	9	9	29	0.829606	4.458591	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.862069
right_lobe_of_liver_female_adult_53_years	chr18	46087012	46087066	46087042	-	High_confidence	9	9	51	1.458962	5.209963	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.901961
right_lobe_of_liver_female_adult_53_years	chr11	57568212	57568213	57568212	-	High_confidence	15	15	18	0.514928	3.683542	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	1.000000
right_lobe_of_liver_female_adult_53_years	chr4	154564960	154565114	154565084	+	RAMPAGE_only	12	12	102	2.917924	5.481660	chr4	154565068	154565287	SINE|MIR|MIR	-	chr4	154563010	154566522	FGB|ENST00000498375.2	+	154563010,154565185,154566488	154563132,154565999,154566522	0.960784
right_lobe_of_liver_female_adult_53_years	chr18	36122196	36122249	36122243	-	High_confidence	2	3	13	0.371892	3.584963	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.923077
right_lobe_of_liver_female_adult_53_years	chr9	107284853	107284875	107284872	+	High_confidence	4	8	18	0.514928	3.852169	chr9	107284763	107284913	SINE|MIR|MIRb	+	chr9	107284768	107332194	RAD23B|NM_001244713.1	+	107284768,107300140,107302034,107306378,107311681,107318751,107321982,107323889,107324833,107329542	107284913,107300222,107302114,107306647,107311737,107318879,107322118,107324017,107325004,107332194	0.555556
right_lobe_of_liver_female_adult_53_years	chr4	70713097	70713098	70713097	+	RAMPAGE_only	6	6	8	0.228857	2.807355	chr4	70713014	70713322	SINE|Alu|AluSp	-	chr4	70721841	70793557	RUFY3|NM_014961.4	+	70721841,70762518,70763551,70764474,70768537,70773510,70775167,70778368,70783090,70784795,70788805,70789494,70791224	70722751,70762692,70763669,70764576,70768661,70773572,70775233,70778438,70783183,70784879,70788973,70789592,70793557	0.500000
right_lobe_of_liver_female_adult_53_years	chr17	1659356	1659357	1659356	-	RAMPAGE_only	5	5	7	0.200250	2.584963	chr17	1659014	1659325	SINE|Alu|AluSx3	-	chr17	1650630	1684837	PRPF8|ENST00000572621.5	-	1650630,1651107,1651413,1651647,1653541,1653776,1655349,1656391,1656647,1658252,1658525,1659356,1659840,1660431,1660697,1660992,1661270,1661610,1661905,1673080,1673356,1673745,1674441,1675151,1675619,1675927,1676206,1676504,1676975,1677564,1678517,1678761,1679016,1679290,1679608,1680725,1680928,1681477,1681819,1682128,1683532,1684471	1650956,1651310,1651553,1651788,1653683,1654016,1655543,1656565,1656761,1658381,1658763,1659548,1660001,1660578,1660827,1661162,1661406,1661790,1662153,1673197,1673567,1673892,1674680,1675339,1675812,1676054,1676370,1676711,1677172,1677694,1678652,1678881,1679206,1679410,1679799,1680831,1681054,1681690,1682038,1682293,1683701,1684837	0.857143
right_lobe_of_liver_female_adult_53_years	chr3	52786644	52786645	52786644	+	High_confidence	6	6	8	0.228857	2.500000	chr3	52786644	52786700	SINE|MIR|MIRc	-	chr3	52786944	52789723	ITIH1|ENST00000484844.2	+	52786944,52787187,52787591,52788028,52788231,52789652	52787099,52787202,52787612,52788066,52788345,52789723	1.000000
right_lobe_of_liver_female_adult_53_years	chr8	97719062	97719183	97719182	+	RAMPAGE_only	20	21	132	3.776136	5.498268	chr8	97719213	97719522	SINE|Alu|AluSx1	+	chr8	97691018	97724652	MTDH|ENST00000519293.1	+	97691018,97713661,97719048,97722878,97724599	97691188,97713769,97719189,97723035,97724652	0.507576
right_lobe_of_liver_female_adult_53_years	chr8	18170419	18170472	18170461	+	High_confidence	17	18	102	2.917924	6.191842	chr8	18170361	18170677	LTR|ERV1|MER57C1	+	chr8	18170461	18223689	NAT1|NM_001291962.1	+	18170461,18170678,18209780,18216876,18219410,18222041	18170507,18170739,18209955,18216994,18219489,18223689	0.627451
right_lobe_of_liver_female_adult_53_years	chr1	26944406	26944418	26944406	+	RAMPAGE_only	8	10	29	0.829606	3.593992	chr1	26944211	26944496	SINE|Alu|AluJb	-	chr1	26921725	26946862	NUDC|ENST00000321265.9	+	26921725,26924088,26941456,26941752,26942659,26942870,26945389,26945567,26946129	26921929,26924166,26941660,26941818,26942776,26943065,26945473,26945686,26946862	0.965517
right_lobe_of_liver_female_adult_53_years	chr2	201116013	201116039	201116013	+	High_confidence	3	3	15	0.429106	3.373557	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	1.000000
right_lobe_of_liver_female_adult_53_years	chr10	96658245	96658247	96658245	-	RAMPAGE_only	6	9	10	0.286071	2.725481	chr10	96658135	96658255	LINE|L2|L2c	-	chr10	96594494	96669611	PIK3AP1|ENST00000371110.6	-	96594494,96602279,96603978,96609711,96616638,96620351,96623471,96626707,96628397,96645472,96648658,96651247,96651508,96652697,96656797,96669530	96595634,96602398,96604049,96609867,96616711,96620557,96623537,96626905,96628493,96645662,96648855,96651380,96651651,96652842,96656934,96669611	0.900000
right_lobe_of_liver_female_adult_53_years	chr14	21360442	21360499	21360442	-	RAMPAGE_only	3	3	25	0.715177	4.373661	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351478	21358402	SUPT16H|ENST00000557394.5	-	21351478,21353487,21353702,21354410,21357196,21357926	21352818,21353565,21353832,21354540,21357366,21358402	0.520000
right_lobe_of_liver_female_adult_53_years	chr1	204870099	204870114	204870099	+	High_confidence	5	6	18	0.514928	3.836592	chr1	204870144	204870213	LINE|CR1|Plat_L3	+	chr1	204870830	205018371	NFASC|ENST00000404076.5	+	204870830,204920631,204944225,204952010,204954187,204954828,204957655,204968248,204968797,204970615,204973275,204974178,204974656,204975270,204976670,204978967,204979361,204980369,204981797,204984026,204985909,204987417,204988632,204991291,205009556,205012796,205016307	204871053,204920740,204944406,204952116,204954384,204954951,204957826,204968360,204968982,204970747,204973419,204974290,204974823,204975418,204976795,204979069,204979559,204980440,204982020,204984142,204986114,204987540,204988806,204991306,205009688,205012866,205018371	0.666667
right_lobe_of_liver_female_adult_53_years	chr3	42872322	42872337	42872336	+	High_confidence	5	5	10	0.286071	2.947703	chr3	42872226	42872456	LINE|L2|L2c	-	chr3	42872110	42900336	STRG.19941.6	+	42872110,42887537,42897037,42898549	42872545,42887701,42898362,42900336	0.600000
right_lobe_of_liver_female_adult_53_years	chr12	50473533	50473534	50473533	+	RAMPAGE_only	7	9	9	0.257464	2.947703	chr12	50473583	50473802	SINE|Alu|AluSx	+	chr12	50440438	50476456	LARP4|ENST00000520064.2	+	50440438,50441589,50453459,50454313,50461134,50462581,50466958,50473414,50473998,50475525	50440549,50441643,50453672,50454417,50461347,50462630,50467120,50473536,50474107,50476456	0.555556
right_lobe_of_liver_female_adult_53_years	chr6	135830504	135830527	135830526	-	High_confidence	28	28	97	2.774888	5.677287	chr6	135830498	135830574	LINE|L2|L2a	+	chr6	135829981	135830544	STRG.39605.1	-	135829981	135830544	0.742268
right_lobe_of_liver_female_adult_53_years	chr3	25737339	25737345	25737339	-	High_confidence	2	3	8	0.228857	3.000000	chr3	25737106	25737338	SINE|MIR|MIRb	-	chr3	25719278	25736346	NGLY1|ENST00000496726.5	-	25719278,25720013,25729132,25733871	25719635,25720191,25729318,25736346	0.875000
right_lobe_of_liver_female_adult_53_years	chr12	50924027	50924051	50924027	+	High_confidence	4	4	11	0.314678	3.027169	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50924004	50929955	METTL7A|ENST00000550502.1	+	50924004,50925036,50929913	50924080,50925536,50929955	0.727273
right_lobe_of_liver_female_adult_53_years	chr1	179877288	179877307	179877288	-	High_confidence	4	5	9	0.257464	2.750000	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179843930	179877772	STRG.6740.3	-	179843930,179847534,179850844,179852631,179856057,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179877373,179877772	0.888889
right_lobe_of_liver_female_adult_53_years	chr17	4497666	4497685	4497684	-	RAMPAGE_only	6	6	21	0.600749	3.536887	chr17	4497641	4497776	SINE|MIR|MIR3	+	chr17	4487677	4490014	STRG.82253.1	-	4487677,4489869	4487840,4490014	0.619048
right_lobe_of_liver_female_adult_53_years	chr10	89556703	89556704	89556703	-	High_confidence	227	251	291	8.324664	6.344419	chr10	89556405	89557345	LTR|ERVL|MER21A	+	chr10	89462502	89556641	SLC16A12|ENST00000475682.1	-	89462502,89555881,89556523	89462624,89555981,89556641	0.567010
right_lobe_of_liver_female_adult_53_years	chr10	95516950	95516970	95516957	-	RAMPAGE_only	59	67	169	4.834599	6.276142	chr10	95516832	95516961	DNA|TcMar-Tigger|Tigger16a	-	chr10	95399016	95520033	STRG.59519.8	-	95399016,95406117,95410632,95421960,95432447,95437489,95441125,95491034,95516756	95399189,95406147,95410777,95422073,95432576,95437555,95441180,95491120,95520033	0.704142
right_lobe_of_liver_female_adult_53_years	chr11	102450343	102450360	102450343	-	High_confidence	3	3	14	0.400499	3.085055	chr11	102450237	102450387	LTR|ERVL-MaLR|MLT1K	+	chr11	102398855	102451231	TMEM123|ENST00000528969.5	-	102398855,102401538,102401915,102448811,102451201	102398891,102401692,102402206,102448868,102451231	0.785714
right_lobe_of_liver_female_adult_53_years	chr10	29959134	29959135	29959134	+	High_confidence	79	79	98	2.803495	5.741966	chr10	29958967	29959329	LTR|ERVL-MaLR|MLT1A0	+	chr10	29959341	29963274	STRG.57186.1	+	29959341,29963246	29960059,29963274	0.632653
right_lobe_of_liver_female_adult_53_years	chr19	14491738	14491739	14491738	-	RAMPAGE_only	7	7	7	0.200250	2.807355	chr19	14491587	14491827	LINE|L2|L2	+	chr19	14477761	14496132	GIPC1|ENST00000393033.8	-	14477761,14478683,14479411,14480304,14480592,14482688,14491655,14492856,14496036	14478567,14478765,14479524,14480485,14480778,14483006,14491743,14492912,14496132	1.000000
right_lobe_of_liver_female_adult_53_years	chr1	160263333	160263373	160263333	-	High_confidence	133	136	634	18.136897	5.998533	chr1	160263175	160263341	LINE|L2|L2a	+	chr1	160240101	160263369	STRG.5695.12	-	160240101,160243959,160263264	160240370,160244034,160263369	0.954259
right_lobe_of_liver_female_adult_53_years	chr17	5412960	5412961	5412960	-	RAMPAGE_only	16	16	24	0.686570	3.641250	chr17	5412904	5413023	LTR|ERV1|LTR78B	+	chr17	5408736	5418229	NUP88|ENST00000572809.1	-	5408736,5410702,5414008,5416512,5418014	5408909,5410789,5414134,5416682,5418229	0.708333
right_lobe_of_liver_female_adult_53_years	chr19	54617130	54617148	54617147	+	High_confidence	7	7	27	0.772392	4.208410	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.925926
right_lobe_of_liver_female_adult_53_years	chr2	208251431	208251447	208251431	-	RAMPAGE_only	17	20	30	0.858213	4.017825	chr2	208251248	208251382	SINE|Alu|FLAM_A	-	chr2	208236226	208254303	IDH1|NM_001282387.1	-	208236226,208239070,208239862,208241993,208243426,208245318,208248368,208251429,208253885,208254030	208237169,208239233,208240003,208242145,208243604,208245424,208248660,208251567,208253959,208254303	0.966667
right_lobe_of_liver_female_adult_53_years	chr20	44359771	44359789	44359788	-	RAMPAGE_only	7	7	24	0.686570	4.251629	chr20	44359581	44359767	DNA|hAT-Charlie|MER20	-	chr20	44355724	44395707	STRG.91356.1	-	44355724,44384522,44395452	44360921,44384672,44395707	1.000000
right_lobe_of_liver_female_adult_53_years	chr4	104907194	104907234	104907194	-	High_confidence	2	2	11	0.314678	3.095795	chr4	104907023	104907169	DNA|hAT-Charlie|Charlie4z	-	chr4	104906461	104906814	STRG.27512.1	-	104906461	104906814	0.636364
right_lobe_of_liver_female_adult_53_years	chr14	81170385	81170420	81170392	-	High_confidence	9	10	60	1.716426	5.153498	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.900000
right_lobe_of_liver_female_adult_53_years	chr1	27370599	27370613	27370605	-	RAMPAGE_only	5	5	16	0.457713	3.323231	chr1	27370456	27370599	SINE|MIR|MIR1_Amn	-	chr1	27369109	27374824	FCN3|NM_173452.1	-	27369109,27370595,27370842,27373135,27373964,27374355,27374727	27369477,27370730,27370972,27373263,27374009,27374451,27374824	0.937500
right_lobe_of_liver_female_adult_53_years	chr20	62776920	62776956	62776920	-	High_confidence	5	5	29	0.829606	4.513153	chr20	62776675	62776888	LTR|ERVL|LTR16A	-	chr20	62774120	62776856	LINC00659|NR_046225.1	-	62774120,62775314,62776805	62774569,62775386,62776856	0.586207
right_lobe_of_liver_female_adult_53_years	chr19	9700673	9700674	9700673	-	High_confidence	7	9	9	0.257464	2.947703	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	1.000000
right_lobe_of_liver_female_adult_53_years	chr8	73358953	73358960	73358953	+	High_confidence	2	2	6	0.171643	2.584963	chr8	73358752	73359123	LTR|ERVL-MaLR|MLT1A1	+	chr8	73358912	73362475	AC111149.2|ENST00000519134.1	+	73358912,73362322	73359227,73362475	1.000000
right_lobe_of_liver_female_adult_53_years	chr5	63154787	63154788	63154787	+	High_confidence	12	12	12	0.343285	3.418296	chr5	63154591	63154983	LTR|ERVL|MLT2A1	+	chr5	63154703	63330746	STRG.30771.1	+	63154703,63301523,63301930,63317768,63330517	63154944,63301693,63302044,63317856,63330746	0.500000
right_lobe_of_liver_female_adult_53_years	chr12	123652718	123652726	123652718	+	RAMPAGE_only	5	5	11	0.314678	3.277613	chr12	123652708	123652795	LINE|L1|L1M5	+	chr12	123648050	123660232	GTF2H3|ENST00000543154.1	+	123648050,123650993,123652531,123652706,123654923,123659515,123659794,123660045,123660165	123648126,123651056,123652561,123652735,123654998,123659584,123659930,123660082,123660232	1.000000
right_lobe_of_liver_female_adult_53_years	chr10	92111686	92111691	92111690	-	High_confidence	13	16	27	0.772392	3.584303	chr10	92111553	92111835	LINE|L1|L1MB7	+	chr10	92046691	92111681	STRG.59366.2	-	92046691,92081319,92091829,92111075,92111471	92052439,92081501,92091944,92111194,92111681	0.962963
right_lobe_of_liver_female_adult_53_years	chr12	104030726	104030727	104030726	+	High_confidence	41	42	51	1.458962	4.970176	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.901961
right_lobe_of_liver_female_adult_53_years	chr18	22873281	22873284	22873283	-	High_confidence	17	20	26	0.743784	4.546594	chr18	22872875	22873256	LTR|ERVL-MaLR|MSTA	-	chr18	22697846	22873329	STRG.85814.1	-	22697846,22704820,22872957	22699663,22704920,22873329	0.500000
right_lobe_of_liver_female_adult_53_years	chr4	8410219	8410220	8410219	-	RAMPAGE_only	7	9	9	0.257464	2.947703	chr4	8410043	8410198	DNA|hAT-Charlie|MER20	-	chr4	8374467	8415855	ACOX3|ENST00000510365.5	-	8374467,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765	8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415855	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	85631313	85631314	85631313	+	RAMPAGE_only	7	7	7	0.200250	2.521641	chr11	85631338	85631448	SINE|MIR|MIRc	+	chr11	85628629	85636159	TMEM126B|ENST00000531274.1	+	85628629,85634085,85635666,85636045	85628688,85634176,85635778,85636159	0.857143
right_lobe_of_liver_female_adult_53_years	chr16	48352953	48352954	48352953	+	RAMPAGE_only	8	8	10	0.286071	2.947703	chr16	48352977	48353104	SINE|MIR|MIRb	+	chr16	48244387	48362737	STRG.81026.1	+	48244387,48252130,48256609,48258617,48261423,48262777,48270015,48277337,48296014,48299661,48303171,48334215,48347506,48348099,48351580,48354118,48361476,48361853	48244621,48252365,48256741,48258740,48261587,48262872,48270274,48277479,48296165,48299788,48303305,48334358,48347714,48348290,48354086,48356710,48361759,48362737	0.900000
right_lobe_of_liver_female_adult_53_years	chr15	34588450	34588453	34588450	-	High_confidence	7	8	12	0.343285	3.459432	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.583333
right_lobe_of_liver_female_adult_53_years	chr9	104889529	104889560	104889529	-	RAMPAGE_only	3	3	8	0.228857	2.750000	chr9	104889298	104889665	LINE|L2|L2c	+	chr9	104861437	104928139	ABCA1|ENST00000374733.1	-	104861437,104883038,104884426,104889101,104927934	104861800,104883157,104884568,104889195,104928139	0.625000
right_lobe_of_liver_female_adult_53_years	chr5	140596602	140596628	140596627	+	High_confidence	10	12	24	0.686570	3.109243	chr5	140596528	140596989	LTR|ERVL|MER70A	+	chr5	140596565	140597195	STRG.34075.1	+	140596565	140597195	0.666667
right_lobe_of_liver_female_adult_53_years	chr8	61578141	61578142	61578141	+	High_confidence	616	621	632	18.079683	6.349621	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.979430
right_lobe_of_liver_female_adult_53_years	chr6	31463984	31463986	31463984	+	High_confidence	3	7	9	0.257464	2.500000	chr6	31463715	31464933	LTR|ERVL|ERV3-16A3_I-int	-	chr6	31463181	31465704	HCP5|ENST00000541196.2	+	31463181,31463370	31463279,31465704	0.666667
right_lobe_of_liver_female_adult_53_years	chr12	9104489	9104501	9104489	-	RAMPAGE_only	2	4	9	0.257464	2.750000	chr12	9104458	9104683	LINE|L2|L2a	-	chr12	9072432	9106296	A2M|ENST00000545828.1	-	9072432,9072652,9101549,9104238,9106235	9072486,9072721,9101674,9104400,9106296	0.555556
right_lobe_of_liver_female_adult_53_years	chr6	85390188	85390220	85390207	-	High_confidence	13	13	29	0.829606	3.624172	chr6	85390133	85390460	LINE|L2|L2c	+	chr6	85387218	85390186	LINC02535|ENST00000455071.1	-	85387218,85390012	85389557,85390186	0.551724
right_lobe_of_liver_female_adult_53_years	chr16	53445769	53445781	53445780	+	High_confidence	3	3	10	0.286071	2.725481	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.900000
right_lobe_of_liver_female_adult_53_years	chr21	41426064	41426090	41426064	+	High_confidence	3	3	14	0.400499	3.392747	chr21	41426026	41426113	DNA|hAT-Charlie|MER5A	-	chr21	41426030	41432147	MX1|ENST00000419044.5	+	41426030,41427205,41427754,41430532,41432049	41426161,41427304,41427866,41430608,41432147	0.785714
right_lobe_of_liver_female_adult_53_years	chr11	1687374	1687379	1687378	-	RAMPAGE_only	6	7	11	0.314678	3.459432	chr11	1687144	1687559	LINE|L1|L1MB3	-	chr11	1683278	1685629	STRG.60968.2	-	1683278,1685437	1684302,1685629	0.636364
right_lobe_of_liver_female_adult_53_years	chr9	133729773	133729774	133729773	-	High_confidence	6	9	9	0.257464	2.947703	chr9	133729569	133729730	SINE|MIR|MIRb	-	chr9	133663563	133730163	SARDH|ENST00000422262.6	-	133663563,133666734,133666767,133670583,133671534,133685192,133690379,133694257,133696222,133702915,133704947,133708286,133712618,133713037,133717325,133718937,133729764,133730063	133664014,133666766,133666870,133670752,133671697,133685286,133690527,133694371,133696361,133703029,133705031,133708428,133712709,133713124,133717455,133719042,133729865,133730163	1.000000
right_lobe_of_liver_female_adult_53_years	chr15	79897454	79897467	79897454	-	High_confidence	12	12	33	0.944034	4.369707	chr15	79897435	79897625	DNA|TcMar-Tigger|Tigger3c	-	chr15	79844975	79897379	MTHFS|ENST00000559722.2	-	79844975,79889092,79897160	79845442,79889354,79897379	1.000000
right_lobe_of_liver_female_adult_53_years	chr11	95794119	95794144	95794143	+	High_confidence	3	4	9	0.257464	2.725481	chr11	95794136	95794176	DNA|hAT-Charlie|Charlie1b	+	chr11	95794261	95800083	STRG.64515.10	+	95794261,95799231	95794533,95800083	1.000000
right_lobe_of_liver_female_adult_53_years	chr1	51403428	51403448	51403432	-	RAMPAGE_only	4	4	13	0.371892	2.565448	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	1.000000
right_lobe_of_liver_female_adult_53_years	chr19	44626972	44626981	44626980	+	RAMPAGE_only	4	4	8	0.228857	2.807355	chr19	44626936	44627280	LINE|L2|L2b	-	chr19	44623745	44636774	STRG.89142.1	+	44623745,44627419,44635400,44636418	44623972,44627573,44635465,44636774	0.750000
right_lobe_of_liver_female_adult_53_years	chr16	56384387	56384400	56384398	-	RAMPAGE_only	9	16	26	0.743784	4.163856	chr16	56383013	56384445	LINE|L2|L2a	+	chr16	56367290	56385972	AMFR|ENST00000566334.1	-	56367290,56369192,56385918	56367527,56369327,56385972	0.615385
right_lobe_of_liver_female_adult_53_years	chr3	52800635	52800663	52800635	+	High_confidence	56	95	157	4.491314	6.425172	chr3	52800685	52800758	SINE|MIR|MIR1_Amn	+	chr3	52800385	52802416	ITIH3|ENST00000464804.1	+	52800385,52800964,52802333	52800663,52801146,52802416	0.535032
right_lobe_of_liver_female_adult_53_years	chr11	95794495	95794511	95794495	+	High_confidence	12	12	29	0.829606	4.789015	chr11	95794328	95794625	LINE|L1|L1M5	-	chr11	95794261	95831167	STRG.64515.1	+	95794261,95795515,95799231,95812931,95813467,95817786,95818826,95821870,95822498,95827785,95829186,95831025	95794533,95795559,95799388,95813111,95813589,95817903,95818904,95821978,95822576,95828027,95829331,95831167	0.965517
right_lobe_of_liver_female_adult_53_years	chr7	6590246	6590300	6590246	+	High_confidence	3	3	27	0.772392	3.643776	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	1.000000
right_lobe_of_liver_female_adult_53_years	chr15	89196167	89196470	89196469	+	RAMPAGE_only	180	184	470	13.445334	5.445103	chr15	89196302	89196472	SINE|MIR|MIR3	+	chr15	89088149	89202360	ABHD2|NM_007011.7	+	89088149,89090282,89102499,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89202360	0.997872
right_lobe_of_liver_female_adult_53_years	chr10	17891728	17891821	17891768	+	High_confidence	26	28	70	2.002497	5.632785	chr10	17891627	17892603	LINE|L1|L1MCa	-	chr10	17891519	17911170	STRG.56918.2	+	17891519,17894209,17898033,17900787,17901972,17906885,17907533,17909305,17910214	17891878,17894312,17898266,17900953,17902122,17906999,17907698,17909347,17911170	0.871429
right_lobe_of_liver_female_adult_53_years	chrX	5726228	5726235	5726228	-	High_confidence	2	3	8	0.228857	2.807355	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.625000
right_lobe_of_liver_female_adult_53_years	chr17	7115349	7115374	7115373	-	High_confidence	5	5	15	0.429106	2.692381	chr17	7115360	7115529	SINE|MIR|MIR	-	chr17	7107838	7115700	ASGR2|ENST00000574868.1	-	7107838,7108461,7108771,7114116,7114614,7115053,7115640	7107907,7108557,7108888,7114310,7114811,7115522,7115700	0.800000
right_lobe_of_liver_female_adult_53_years	chr12	54187904	54187905	54187904	-	High_confidence	7	7	7	0.200250	2.521641	chr12	54187852	54187993	LINE|L2|L2c	-	chr12	54181484	54187906	SMUG1|ENST00000505662.1	-	54181484,54183764,54187818	54182623,54183959,54187906	0.857143
right_lobe_of_liver_female_adult_53_years	chr10	68307085	68307184	68307107	-	High_confidence	38	38	136	3.890565	4.455398	chr10	68307029	68307329	SINE|Alu|AluSx1	-	chr10	68287026	68306879	PBLD|ENST00000277795.8	-	68287026,68292009,68292128,68296885,68306760	68289019,68292039,68292238,68296985,68306879	0.838235
right_lobe_of_liver_female_adult_53_years	chr4	154571315	154572453	154571315	+	RAMPAGE_only	480	569	3870	110.709452	7.603766	chr4	154571221	154571487	SINE|Alu|AluSx4	+	chr4	154562979	154572763	FGB|NM_005141.4	+	154562979,154565807,154566488,154567592,154568380,154569181,154569513,154570418	154563132,154565999,154566672,154567820,154568494,154569307,154569799,154572763	0.877519
right_lobe_of_liver_female_adult_53_years	chr3	129724020	129724117	129724116	-	RAMPAGE_only	12	12	50	1.430355	5.119513	chr3	129724100	129724190	LINE|CR1|L3	+	chr3	129647791	129688732	TMCC1|NR_033361.1	-	129647791,129654967,129670329,129688176	129651795,129655103,129671264,129688732	0.860000
right_lobe_of_liver_female_adult_53_years	chr6	122444139	122444648	122444225	-	RAMPAGE_only	109	110	659	18.852075	5.753493	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	1.000000
right_lobe_of_liver_female_adult_53_years	chr5	95852231	95852232	95852231	+	High_confidence	245	245	249	7.123166	4.618004	chr5	95850982	95852649	LTR|ERV1|LTR12C	+	chr5	95852231	95860133	LINC01554|ENST00000436592.5	+	95852231,95852791,95856877,95858803	95852714,95852926,95856981,95860133	0.971888
right_lobe_of_liver_female_adult_53_years	chr11	123060124	123060257	123060137	-	High_confidence	342	411	2185	62.506499	5.604942	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.630206
right_lobe_of_liver_female_adult_53_years	chr16	87381459	87381478	87381469	-	RAMPAGE_only	4	5	12	0.343285	3.251629	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87302883	87383751	STRG.81871.1	-	87302883,87305718,87314970,87315771,87333885,87335303,87336154,87342876,87343597,87347173,87360294,87383404	87303075,87305905,87315096,87315823,87334286,87335457,87336264,87342951,87343765,87347250,87360366,87383751	0.583333
right_lobe_of_liver_female_adult_53_years	chr1	43250373	43250437	43250390	-	High_confidence	70	71	309	8.839592	6.415821	chr1	43249744	43250419	LTR|ERV1|LOR1-int	-	chr1	43194683	43250391	EBNA1BP2|ENST00000474566.1	-	43194683,43206345,43211449,43215265,43250218	43194949,43206392,43211567,43215393,43250391	0.543689
right_lobe_of_liver_female_adult_53_years	chr20	44887704	44887724	44887704	+	RAMPAGE_only	4	4	19	0.543535	3.614369	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885739	44901833	YWHAB|ENST00000428262.1	+	44885739,44887544,44901530	44885886,44887742,44901833	0.789474
right_lobe_of_liver_female_adult_53_years	chr2	11201313	11201327	11201313	-	RAMPAGE_only	4	4	10	0.286071	2.947703	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.900000
right_lobe_of_liver_female_adult_53_years	chr3	182895882	182895948	182895882	-	High_confidence	4	5	40	1.144284	4.821928	chr3	182895589	182896029	LTR|ERV1|LTR46	-	chr3	182895192	182895949	STRG.23753.1	-	182895192	182895949	0.750000
right_lobe_of_liver_female_adult_53_years	chr17	69325732	69325739	69325732	-	RAMPAGE_only	5	5	9	0.257464	2.725481	chr17	69325641	69325831	SINE|Alu|AluJo	+	chr17	69306762	69327090	STRG.84781.14	-	69306762,69308279,69309261,69313091,69314313,69327051	69306954,69308368,69309423,69313296,69325817,69327090	1.000000
right_lobe_of_liver_female_adult_53_years	chr19	44627091	44627096	44627095	+	RAMPAGE_only	7	7	16	0.457713	4.000000	chr19	44626936	44627280	LINE|L2|L2b	-	chr19	44623745	44636774	STRG.89142.1	+	44623745,44627419,44635400,44636418	44623972,44627573,44635465,44636774	0.875000
right_lobe_of_liver_female_adult_53_years	chr21	22062949	22062958	22062957	-	High_confidence	13	13	24	0.686570	4.334963	chr21	22062350	22062974	LINE|L2|L2a	+	chr21	22034916	22062809	STRG.92241.2	-	22034916,22042944,22062008	22041435,22043087,22062809	1.000000
right_lobe_of_liver_female_adult_53_years	chr8	144106357	144106365	144106357	+	High_confidence	3	3	8	0.228857	2.521641	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.750000
right_lobe_of_liver_female_adult_53_years	chr4	7531164	7531195	7531194	+	High_confidence	62	77	224	6.407989	5.624754	chr4	7531070	7531252	SINE|MIR|MIRc	+	chr4	7531067	7667384	STRG.24842.3	+	7531067,7531529,7638327,7654133,7661499,7664352,7667123	7531321,7531629,7638492,7654207,7661564,7664471,7667384	0.866071
right_lobe_of_liver_female_adult_53_years	chr12	53464815	53464816	53464815	+	RAMPAGE_only	34	34	40	1.144284	4.528741	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.975000
right_lobe_of_liver_female_adult_53_years	chr9	20694517	20694518	20694517	+	RAMPAGE_only	11	11	11	0.314678	3.277613	chr9	20694323	20694599	DNA|hAT-Charlie|Charlie15b	-	chr9	20684266	20770112	STRG.52468.3	+	20684266,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20684293,20715410,20717868,20720534,20740340,20758191,20765073,20770112	1.000000
right_lobe_of_liver_female_adult_53_years	chr6	118651592	118651605	118651592	-	High_confidence	7	7	13	0.371892	3.188722	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.923077
right_lobe_of_liver_female_adult_53_years	chr2	200857723	200857753	200857723	-	High_confidence	1	1	7	0.200250	2.584963	chr2	200857615	200857696	LINE|L1|L1MA8	-	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.857143
right_lobe_of_liver_female_adult_53_years	chrX	74000196	74000222	74000196	+	RAMPAGE_only	1	1	7	0.200250	2.584963	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.571429
right_lobe_of_liver_female_adult_53_years	chr2	10120434	10120435	10120434	+	High_confidence	7	7	9	0.257464	2.750000	chr2	10120422	10120535	SINE|Alu|FLAM_C	+	chr2	10120697	10131418	RRM2|ENST00000641198.1	+	10120697,10122754,10122982,10123386,10123735,10124716,10126874,10127086,10128847,10129040,10129233	10120882,10122897,10123057,10123530,10123852,10124850,10126969,10127220,10128952,10129154,10131418	0.777778
right_lobe_of_liver_female_adult_53_years	chr13	99496638	99496639	99496638	-	RAMPAGE_only	10	10	10	0.286071	2.846439	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99486961	99499306	LINC01232|NR_110731.1	-	99486961,99496134,99496374,99497248,99498685	99487816,99496217,99496544,99497336,99499306	0.800000
right_lobe_of_liver_female_adult_53_years	chr10	29420527	29420557	29420527	+	RAMPAGE_only	6	6	19	0.543535	4.058814	chr10	29420498	29420628	LINE|L1|L1MA6	+	chr10	29409571	29422372	SVIL-AS1|ENST00000427063.6	+	29409571,29415356,29420490	29409658,29415412,29422372	0.842105
right_lobe_of_liver_female_adult_53_years	chrX	20204025	20204073	20204049	-	RAMPAGE_only	4	4	18	0.514928	3.734522	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.944444
right_lobe_of_liver_female_adult_53_years	chr11	69352994	69353059	69353027	-	High_confidence	6	6	27	0.772392	4.236369	chr11	69352803	69353053	SINE|MIR|MIR	+	chr11	69345861	69353047	STRG.63111.1	-	69345861,69352903	69346095,69353047	0.629630
right_lobe_of_liver_female_adult_53_years	chr9	108885822	108885839	108885822	-	RAMPAGE_only	3	3	7	0.200250	2.584963	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108867516	108893083	ELP1|ENST00000495759.5	-	108867516,108874894,108875632,108877994,108878622,108879445,108880051,108881704,108882124,108889331,108891202,108892985	108869182,108874970,108875735,108878149,108878750,108879557,108880165,108881765,108882187,108889393,108891404,108893083	0.571429
right_lobe_of_liver_female_adult_53_years	chr1	85379650	85379660	85379656	-	RAMPAGE_only	5	8	15	0.429106	3.521641	chr1	85379540	85379612	SINE|MIR|MIR	-	chr1	85321451	85404528	DDAH1|ENST00000633113.1	-	85321451,85324739,85350414,85351505,85358747,85404380	85321568,85324883,85350534,85351579,85358847,85404528	0.866667
right_lobe_of_liver_female_adult_53_years	chr11	65434039	65434071	65434070	+	RAMPAGE_only	11	11	40	1.144284	4.576618	chr11	65433870	65434194	LINE|L1|L1ME3F	-	chr11	65423637	65445540	STRG.62879.5	+	65423637,65434274	65434178,65445540	0.875000
right_lobe_of_liver_female_adult_53_years	chr9	97575039	97575040	97575039	+	RAMPAGE_only	10	10	14	0.400499	2.807355	chr9	97574036	97575455	LTR|ERV1|LTR12C	+	chr9	97501670	97591595	STRG.54875.2	+	97501670,97524140,97546184,97553280,97562731,97564037,97565847,97568893,97574010,97591290	97501803,97524308,97546341,97553400,97562821,97564168,97565955,97569037,97575486,97591595	0.857143
right_lobe_of_liver_female_adult_53_years	chr1	196796624	196796636	196796624	+	RAMPAGE_only	8	9	16	0.457713	3.456565	chr1	196795456	196797077	LTR|ERVL-MaLR|THE1B-int	+	chr1	196774815	196797782	STRG.7464.9	+	196774815,196779161,196779796,196788215,196790044,196793316,196794598	196774944,196779356,196779973,196788398,196790227,196794508,196797782	0.875000
right_lobe_of_liver_female_adult_53_years	chr5	66690173	66690223	66690173	+	High_confidence	20	21	83	2.374389	5.503417	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66690115	67130488	STRG.30949.1	+	66690115,66736711,66759708,66788669,66899950,66916982,67054403,67090161,67095596,67100434,67102535,67104365,67110097,67114086,67118681,67121016,67130209	66690286,66736821,66759862,66788794,66899982,66917018,67054492,67090231,67095675,67100592,67102611,67104575,67110199,67114219,67118749,67121102,67130488	0.710843
right_lobe_of_liver_female_adult_53_years	chr11	18267750	18267759	18267750	+	RAMPAGE_only	4	4	9	0.257464	2.750000	chr11	18267725	18267943	SINE|MIR|MIRb	-	chr11	18266263	18269977	SAA1|ENST00000405158.2	+	18266263,18266883,18269194,18269716	18266443,18266978,18269333,18269977	0.888889
right_lobe_of_liver_female_adult_53_years	chr14	64453754	64453851	64453850	+	RAMPAGE_only	27	31	113	3.232602	5.035233	chr14	64453898	64454014	SINE|MIR|MIR3	+	chr14	64457996	64460003	MTHFD1|ENST00000554353.1	+	64457996,64459758	64458307,64460003	0.849558
right_lobe_of_liver_female_adult_53_years	chr4	154608797	154608798	154608797	-	RAMPAGE_only	17	17	20	0.572142	4.247928	chr4	154608742	154608923	SINE|MIR|MIRb	+	chr4	154604170	154609843	FGG|ENST00000465913.1	-	154604170,154606704,154608465,154609629	154605066,154606982,154608650,154609843	0.600000
right_lobe_of_liver_female_adult_53_years	chr12	120465638	120465651	120465650	-	High_confidence	5	5	14	0.400499	3.235926	chr12	120465539	120465607	SINE|MIR|MIRb	-	chr12	120461710	120464943	SRSF9|ENST00000548792.1	-	120461710,120463949	120462162,120464943	1.000000
right_lobe_of_liver_female_adult_53_years	chr7	99761237	99761253	99761252	-	RAMPAGE_only	3	5	9	0.257464	3.000000	chr7	99761216	99761430	DNA|TcMar-Tigger|MamRep137	-	chr7	99705043	99780053	STRG.44969.9	-	99705043,99757836,99760818,99762040,99763854,99766376,99767130,99768353,99769767,99770121,99772589,99778027,99779991	99705503,99758228,99760981,99762267,99764015,99766443,99767258,99768502,99769856,99770235,99772689,99778080,99780053	0.666667
right_lobe_of_liver_female_adult_53_years	chrX	73994945	73994957	73994945	+	RAMPAGE_only	6	6	10	0.286071	2.646439	chrX	73994826	73995038	SINE|Alu|AluSp	-	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	1.000000
right_lobe_of_liver_female_adult_53_years	chr3	4782345	4782359	4782358	+	High_confidence	3	3	8	0.228857	3.000000	chr3	4782402	4782508	DNA|hAT-Charlie|MER117	+	chr3	4782339	4788458	ITPR1|ENST00000481415.2	+	4782339,4783815,4787946	4782741,4783920,4788458	1.000000
right_lobe_of_liver_female_adult_53_years	chr3	52805136	52805204	52805175	+	High_confidence	2	2	12	0.343285	3.277613	chr3	52804987	52805185	SINE|MIR|MIR	-	chr3	52804805	52808796	ITIH3|ENST00000493136.1	+	52804805,52806292,52806900,52807746,52808109,52808551	52806138,52806406,52807105,52807916,52808221,52808796	0.916667
right_lobe_of_liver_female_adult_53_years	chr5	140596495	140596496	140596495	+	High_confidence	4	4	7	0.200250	2.521641	chr5	140596528	140596989	LTR|ERVL|MER70A	+	chr5	140596565	140597195	STRG.34075.1	+	140596565	140597195	0.714286
right_lobe_of_liver_female_adult_53_years	chr12	69592140	69592147	69592146	+	High_confidence	4	5	11	0.314678	3.459432	chr12	69592196	69592505	SINE|Alu|AluSp	+	chr12	69592536	69597242	CCT2|ENST00000553169.1	+	69592536,69593509,69597155	69593103,69593613,69597242	0.545455
right_lobe_of_liver_female_adult_53_years	chr5	65722882	65722896	65722895	-	High_confidence	4	4	9	0.257464	3.000000	chr5	65722781	65722883	DNA|hAT-Ac|OldhAT1	-	chr5	65680687	65723035	SGTB|ENST00000506816.1	-	65680687,65685367,65704278,65708488,65712960,65720707,65722756	65680794,65685472,65704378,65708558,65713064,65720829,65723035	0.888889
right_lobe_of_liver_female_adult_53_years	chr1	89272783	89272887	89272859	-	High_confidence	18	18	141	4.033600	5.561033	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.943262
right_lobe_of_liver_female_adult_53_years	chr16	1828209	1828225	1828224	+	RAMPAGE_only	3	3	11	0.314678	3.121928	chr16	1827999	1828297	SINE|Alu|AluY	+	chr16	1827223	1828907	FAHD1|NM_031208.3	+	1827223	1828907	0.545455
right_lobe_of_liver_female_adult_53_years	chr1	110897839	110897876	110897875	+	RAMPAGE_only	4	4	12	0.343285	2.663533	chr1	110897898	110898002	SINE|MIR|MIR	+	chr1	110894308	110899851	CD53|ENST00000497404.1	+	110894308,110894959,110899123	110894401,110895055,110899851	0.916667
right_lobe_of_liver_female_adult_53_years	chr16	72014320	72014321	72014320	+	High_confidence	9	10	10	0.286071	2.947703	chr16	72014239	72014429	DNA|hAT-Charlie|MER5A	-	chr16	72014418	72021231	DHODH|ENST00000572003.5	+	72014418,72017023,72020401,72021123	72014672,72017106,72020498,72021231	0.900000
right_lobe_of_liver_female_adult_53_years	chr1	200411799	200411814	200411799	+	High_confidence	748	766	1300	37.189221	6.458923	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411799	200475513	AC104461.1|ENST00000634596.1	+	200411799,200473908	200411962,200475513	0.776154
right_lobe_of_liver_female_adult_53_years	chr6	107872858	107872865	107872864	-	RAMPAGE_only	7	9	15	0.429106	3.773557	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	1.000000
right_lobe_of_liver_female_adult_53_years	chr9	12784737	12784750	12784737	+	RAMPAGE_only	15	15	23	0.657963	4.001823	chr9	12783851	12785961	LINE|L1|L1MA3	-	chr9	12775020	12822131	LURAP1L|ENST00000319264.3	+	12775020,12821385	12776027,12822131	0.956522
right_lobe_of_liver_female_adult_53_years	chr1	226939240	226939241	226939240	+	High_confidence	6	6	6	0.171643	2.584963	chr1	226939237	226939309	DNA|hAT-Charlie|Charlie18a	-	chr1	226940236	226987545	ADCK3|NM_020247.4	+	226940236,226961376,226964999,226965670,226977448,226982026,226982677,226982893,226983551,226983760,226984093,226984547,226984875,226985253,226986452	226940399,226961562,226965410,226965737,226977523,226982149,226982763,226983034,226983633,226983854,226984235,226984655,226984941,226985340,226987545	0.500000
right_lobe_of_liver_female_adult_53_years	chr10	45000503	45000515	45000513	+	High_confidence	6	11	25	0.715177	4.053661	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.960000
right_lobe_of_liver_female_adult_53_years	chr1	229905803	229905822	229905821	-	High_confidence	29	29	75	2.145532	5.510495	chr1	229905660	229907247	LINE|L1|L1M5	+	chr1	229897198	229905809	STRG.8817.1	-	229897198,229905753	229897656,229905809	0.826667
right_lobe_of_liver_female_adult_53_years	chr6	142259719	142259750	142259749	-	High_confidence	6	6	19	0.543535	3.836592	chr6	142259604	142259832	LINE|L1|L1MEc	-	chr6	142259336	142259743	STRG.39828.1	-	142259336	142259743	0.526316
right_lobe_of_liver_female_adult_53_years	chr4	76312161	76312184	76312161	-	High_confidence	2	3	9	0.257464	2.750000	chr4	76311899	76312277	LTR|ERVL-MaLR|MLT1J2	-	chr4	76311530	76312167	STRG.26678.2	-	76311530	76312167	0.666667
right_lobe_of_liver_female_adult_53_years	chr6	137218691	137218726	137218725	-	High_confidence	5	5	14	0.400499	3.238901	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.928571
sigmoid_colon_female_adult_51_years	chr18	59592069	59592085	59592070	-	High_confidence	4	8	14	1.242349	2.699514	chr18	59591904	59592076	DNA|TcMar-Tigger|Tigger4b	+	chr18	59584546	59592611	STRG.103741.1	-	59584546,59591284	59590946,59592611	1.000000
sigmoid_colon_female_adult_51_years	chr15	62894572	62894597	62894572	+	RAMPAGE_only	6	6	19	1.686045	3.511085	chr15	62894534	62894826	SINE|Alu|AluSx3	+	chr15	62895811	62899543	AC103740.2|ENST00000557900.1	+	62895811,62898650	62896143,62899543	0.894737
sigmoid_colon_female_adult_51_years	chr7	150323720	150323729	150323728	-	High_confidence	3	3	7	0.621174	2.584963	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	0.857143
sigmoid_colon_female_adult_51_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	30	30	42	3.727047	4.594466	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86463602	86492712	STRG.14549.5	+	86463602,86466371,86470203,86474775,86477876,86478169,86478607,86481929,86482457,86483986,86484941,86485728,86489317,86489519,86490880,86491140,86492038	86464216,86466883,86470408,86474990,86478029,86478265,86480362,86482102,86482694,86484158,86485029,86485859,86489437,86489659,86491057,86491275,86492712	0.952381
sigmoid_colon_female_adult_51_years	chr19	52169746	52169762	52169761	-	High_confidence	3	3	7	0.621174	2.521641	chr19	52169654	52169811	SINE|Alu|AluJb	+	chr19	52165183	52169734	ZNF836|ENST00000602187.1	-	52165183,52168057,52169647	52165385,52168152,52169734	0.857143
sigmoid_colon_female_adult_51_years	chr2	200889293	200889318	200889293	-	High_confidence	21	21	51	4.525700	4.878563	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.764706
sigmoid_colon_female_adult_51_years	chr1	155478110	155478112	155478110	-	RAMPAGE_only	4	7	8	0.709914	2.521641	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.875000
sigmoid_colon_female_adult_51_years	chr3	135965673	135965765	135965723	+	High_confidence	19	29	158	14.020795	5.966336	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	1.000000
sigmoid_colon_female_adult_51_years	chr21	28674853	28674856	28674855	-	High_confidence	6	10	10	0.887392	2.921928	chr21	28674675	28675025	LTR|ERVL-MaLR|MLT1A0	-	chr21	28439345	28674848	AF165147.1|ENST00000433310.6	-	28439345,28446289,28577218,28626584,28674646	28444809,28446472,28577380,28626676,28674848	0.800000
sigmoid_colon_female_adult_51_years	chr20	44532520	44532570	44532569	+	High_confidence	10	11	20	1.774784	3.932138	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.550000
sigmoid_colon_female_adult_51_years	chr3	3782597	3782626	3782597	-	RAMPAGE_only	2	2	8	0.709914	2.750000	chr3	3782417	3783018	LTR|ERVL|MLT2A2	-	chr3	3777640	3789121	STRG.20864.2	-	3777640,3779240,3782502,3788913	3777803,3779322,3782701,3789121	0.875000
sigmoid_colon_female_adult_51_years	chr21	28048446	28048447	28048446	+	High_confidence	62	65	77	6.832919	4.595439	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.961039
sigmoid_colon_female_adult_51_years	chr15	98017769	98017790	98017769	-	High_confidence	91	101	332	29.461417	7.098553	chr15	98016264	98017842	LINE|L2|L2a	+	chr15	98013375	98017764	STRG.94491.2	-	98013375	98017764	0.909639
sigmoid_colon_female_adult_51_years	chr11	58578102	58578133	58578132	-	High_confidence	10	16	50	4.436960	4.217280	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.900000
sigmoid_colon_female_adult_51_years	chr8	11795578	11795579	11795578	+	High_confidence	45	45	46	4.082004	4.366760	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287744.1	+	11795572,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.978261
sigmoid_colon_female_adult_51_years	chr9	121314002	121314021	121314002	+	RAMPAGE_only	115	117	284	25.201935	5.815794	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.985915
sigmoid_colon_female_adult_51_years	chr20	45448054	45448073	45448055	-	High_confidence	3	4	8	0.709914	2.521641	chr20	45447959	45448040	SINE|MIR|MIR3	-	chr20	45444512	45448325	STRG.110047.2	-	45444512,45447231	45446361,45448325	0.875000
sigmoid_colon_female_adult_51_years	chr19	11196072	11196163	11196140	-	High_confidence	25	25	273	24.225804	6.221343	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.937729
sigmoid_colon_female_adult_51_years	chrX	5726324	5726325	5726324	-	High_confidence	7	7	8	0.709914	2.521641	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.750000
sigmoid_colon_female_adult_51_years	chr12	55516318	55516319	55516318	+	RAMPAGE_only	6	6	6	0.532435	2.584963	chr12	55515725	55517184	LINE|L1|L1M1	+	chr12	56158160	56161574	MYL6|ENST00000550697.5	+	56158160,56158683,56159586,56159974,56160242,56160625,56161386	56158404,56158711,56159730,56160148,56160320,56160670,56161574	1.000000
sigmoid_colon_female_adult_51_years	chr19	17336685	17336727	17336719	+	High_confidence	11	11	34	3.017133	4.535849	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336723	17342730	GTPBP3|ENST00000598038.5	+	17336723,17338007,17338364,17338538,17338953,17339433,17341106,17341477,17342155	17337576,17338255,17338451,17338741,17339266,17339599,17341322,17341733,17342730	1.000000
sigmoid_colon_female_adult_51_years	chr2	219425188	219425189	219425188	+	RAMPAGE_only	10	13	15	1.331088	3.506891	chr2	219424901	219425196	SINE|Alu|AluSg	-	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	0.933333
sigmoid_colon_female_adult_51_years	chr14	50756739	50756943	50756928	-	RAMPAGE_only	4	6	36	3.194611	4.326466	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
sigmoid_colon_female_adult_51_years	chr12	122064346	122064376	122064375	+	High_confidence	26	26	48	4.259482	4.884168	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063986	122068558	STRG.83563.1	+	122063986,122068027,122068288	122064682,122068191,122068558	0.666667
sigmoid_colon_female_adult_51_years	chr7	40509494	40509498	40509494	+	High_confidence	15	15	33	2.928394	4.571375	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40509499	40860763	STRG.50846.2	+	40509499,40749433,40860315	40509545,40749497,40860763	0.636364
sigmoid_colon_female_adult_51_years	chrX	19350008	19350022	19350008	+	RAMPAGE_only	8	8	13	1.153610	3.085055	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19352828	19355445	PDHA1|ENST00000479146.1	+	19352828,19354490,19355348	19353173,19354583,19355445	0.692308
sigmoid_colon_female_adult_51_years	chr1	202551862	202551884	202551862	+	RAMPAGE_only	3	3	9	0.798653	2.725481	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.888889
sigmoid_colon_female_adult_51_years	chr12	7502504	7502569	7502522	-	High_confidence	12	12	52	4.614439	4.909682	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.980769
sigmoid_colon_female_adult_51_years	chr2	232816731	232816766	232816731	+	RAMPAGE_only	8	8	23	2.041002	3.879664	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.956522
sigmoid_colon_female_adult_51_years	chr12	45292825	45292845	45292825	+	High_confidence	3	3	8	0.709914	2.521641	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.875000
sigmoid_colon_female_adult_51_years	chr1	192986911	192986943	192986911	-	RAMPAGE_only	2	3	9	0.798653	3.169925	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192935795	192957713	AL390957.1|ENST00000647436.1	-	192935795,192957303	192935903,192957713	0.777778
sigmoid_colon_female_adult_51_years	chr7	6590248	6590270	6590248	+	High_confidence	2	3	9	0.798653	2.750000	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.888889
sigmoid_colon_female_adult_51_years	chr20	50130092	50130121	50130092	-	RAMPAGE_only	14	15	47	4.170743	4.567194	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.957447
sigmoid_colon_female_adult_51_years	chr4	119504539	119504564	119504539	-	RAMPAGE_only	28	28	42	3.727047	3.696321	chr4	119503954	119504512	LINE|L1|L1PA17	-	chr4	119500822	119519099	PDE5A|ENST00000503412.1	-	119500822,119502580,119504535,119505854,119507603,119511046,119519044	119501253,119502655,119504599,119505932,119507704,119511134,119519099	0.571429
sigmoid_colon_female_adult_51_years	chr14	73567606	73567629	73567616	+	High_confidence	8	9	28	2.484698	3.923252	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.928571
sigmoid_colon_female_adult_51_years	chr4	185620092	185620126	185620125	-	RAMPAGE_only	15	20	51	4.525700	4.110685	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.941176
sigmoid_colon_female_adult_51_years	chr17	49621955	49621970	49621955	-	RAMPAGE_only	2	2	13	1.153610	3.584963	chr17	49621756	49621905	LINE|L2|L2a	-	chr17	49607249	49619304	SPOP|ENST00000509869.5	-	49607249,49607873,49611279,49612778,49618503,49618980,49619233	49607372,49607929,49611457,49612941,49618563,49619108,49619304	0.846154
sigmoid_colon_female_adult_51_years	chr16	15740077	15740182	15740077	-	RAMPAGE_only	461	472	2219	196.912302	7.681247	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.987832
sigmoid_colon_female_adult_51_years	chr15	75347042	75347074	75347042	+	High_confidence	6	6	17	1.508567	2.984234	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347089	75355245	NEIL1|ENST00000561643.5	+	75347089,75347202,75348883,75352110,75352323,75352601,75354652,75354963	75347110,75347473,75349339,75352230,75352387,75354492,75354818,75355245	1.000000
sigmoid_colon_female_adult_51_years	chr1	227142956	227142957	227142956	-	RAMPAGE_only	11	11	13	1.153610	3.546594	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.769231
sigmoid_colon_female_adult_51_years	chr16	15782840	15782855	15782853	-	High_confidence	2	4	9	0.798653	2.500000	chr16	15782761	15782860	DNA|hAT-Tip100|MER91C	+	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.666667
sigmoid_colon_female_adult_51_years	chr12	46243208	46243299	46243278	-	RAMPAGE_only	8	11	47	4.170743	4.493433	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	1.000000
sigmoid_colon_female_adult_51_years	chr14	102235458	102235472	102235458	-	High_confidence	5	6	14	1.242349	3.182006	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.785714
sigmoid_colon_female_adult_51_years	chr1	202551963	202551995	202551994	+	RAMPAGE_only	6	8	28	2.484698	4.384517	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.714286
sigmoid_colon_female_adult_51_years	chr12	95381141	95381243	95381141	-	High_confidence	13	13	79	7.010397	5.708229	chr12	95380967	95381176	DNA|hAT-Charlie|MER102a	+	chr12	95368194	95381238	STRG.82491.4	-	95368194,95380726	95377369,95381238	0.708861
sigmoid_colon_female_adult_51_years	chr11	86823567	86823568	86823567	+	High_confidence	5	5	8	0.709914	2.750000	chr11	86823472	86823627	LINE|L2|L2b	-	chr11	86823395	86954285	STRG.76164.2	+	86823395,86939019,86950355,86951215,86954219	86823593,86939126,86950499,86952571,86954285	0.625000
sigmoid_colon_female_adult_51_years	chr1	31703836	31703880	31703836	-	High_confidence	2	2	9	0.798653	2.725481	chr1	31703656	31703803	SINE|MIR|MIR3	-	chr1	31698489	31704060	COL16A1|ENST00000532877.1	-	31698489,31699812,31700040,31703836	31698606,31699930,31700115,31704060	1.000000
sigmoid_colon_female_adult_51_years	chr5	109383497	109383516	109383515	-	High_confidence	3	3	10	0.887392	2.921928	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
sigmoid_colon_female_adult_51_years	chr2	3536862	3536899	3536872	-	High_confidence	11	12	70	6.211745	5.599006	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.885714
sigmoid_colon_female_adult_51_years	chr2	73908399	73908440	73908399	+	RAMPAGE_only	2	2	17	1.508567	3.750000	chr2	73908047	73908439	LTR|ERVL|LTR33	-	chr2	73893007	73919865	ACTG2|ENST00000409624.1	+	73893007,73896751,73901275,73902359,73908672,73909054,73913484,73914679,73916583,73919431	73893051,73897314,73901437,73902488,73908783,73909139,73913646,73914871,73916765,73919865	0.647059
sigmoid_colon_female_adult_51_years	chr20	37503907	37503933	37503932	-	High_confidence	4	7	14	1.242349	3.238901	chr20	37503129	37504179	LINE|L2|L2b	+	chr20	37499892	37503975	BLCAP|ENST00000613961.1	-	37499892	37503975	0.928571
sigmoid_colon_female_adult_51_years	chr1	201489117	201489140	201489117	-	RAMPAGE_only	7	7	13	1.153610	3.392747	chr1	201489113	201489169	SINE|MIR|MIRc	-	chr1	201483531	201492499	CSRP1|ENST00000533402.5	-	201483531,201485282	201484789,201492499	1.000000
sigmoid_colon_female_adult_51_years	chr3	57267772	57267782	57267772	+	RAMPAGE_only	6	6	17	1.508567	3.410417	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	1.000000
sigmoid_colon_female_adult_51_years	chr3	134485415	134485489	134485443	-	High_confidence	5	5	35	3.105872	4.250572	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.714286
sigmoid_colon_female_adult_51_years	chr2	159428326	159428357	159428356	-	RAMPAGE_only	16	17	40	3.549568	4.921928	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.750000
sigmoid_colon_female_adult_51_years	chr1	201496572	201496573	201496572	-	High_confidence	22	23	25	2.218480	4.053509	chr1	201496505	201496564	LINE|L2|L2a	-	chr1	201483529	201496573	CSRP1|NM_001193572.1	-	201483529,201485282,201488854,201490175,201496191,201496421	201484789,201485376,201488984,201490344,201496304,201496573	0.840000
sigmoid_colon_female_adult_51_years	chr12	4303912	4304079	4303912	+	RAMPAGE_only	16	17	119	10.559966	5.396353	chr12	4303932	4303980	LINE|RTE-BovB|MamRTE1	+	chr12	4273771	4305350	CCND2|ENST00000261254.7	+	4273771,4276004,4278759,4288841,4299859	4274235,4276220,4278919,4288990,4305350	0.974790
sigmoid_colon_female_adult_51_years	chr4	152412480	152412529	152412528	-	High_confidence	7	7	25	2.218480	4.103465	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.960000
sigmoid_colon_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	37	38	38	3.372090	4.614859	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.710526
sigmoid_colon_female_adult_51_years	chr21	44962778	44962810	44962790	+	High_confidence	3	3	10	0.887392	2.921928	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44962392	44976973	STRG.112275.4	+	44962392,44967033,44973196,44976679	44962856,44967181,44973265,44976973	0.900000
sigmoid_colon_female_adult_51_years	chr22	36388582	36388588	36388587	+	High_confidence	3	3	8	0.709914	2.500000	chr22	36388622	36388760	LINE|L2|L2c	+	chr22	36388625	36396517	FO393418.1|ENST00000424761.1	+	36388625,36396117	36388735,36396517	0.625000
sigmoid_colon_female_adult_51_years	chr10	95437800	95437816	95437815	-	RAMPAGE_only	28	29	56	4.969396	5.083320	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.767857
sigmoid_colon_female_adult_51_years	chr6	107872860	107872878	107872877	-	RAMPAGE_only	2	2	8	0.709914	2.807355	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.875000
sigmoid_colon_female_adult_51_years	chr14	81427431	81427474	81427434	-	High_confidence	4	4	17	1.508567	3.219528	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	1.000000
sigmoid_colon_female_adult_51_years	chr8	11795959	11796010	11795986	+	High_confidence	13	14	33	2.928394	4.513795	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795598	11831667	STRG.56526.1	+	11795598,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831667	0.696970
sigmoid_colon_female_adult_51_years	chr11	123061128	123061257	123061256	-	High_confidence	88	90	213	18.901451	5.485381	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.971831
sigmoid_colon_female_adult_51_years	chr9	127543805	127543810	127543805	-	RAMPAGE_only	11	12	26	2.307219	4.243856	chr9	127543678	127543822	LINE|L2|L2c	+	chr9	127507171	127568953	FAM129B|ENST00000468379.1	-	127507171,127507866,127525057,127527193,127531647,127568819	127507431,127507934,127525163,127527322,127531778,127568953	0.576923
sigmoid_colon_female_adult_51_years	chr9	121281844	121281851	121281844	+	RAMPAGE_only	5	5	12	1.064870	3.277613	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.750000
sigmoid_colon_female_adult_51_years	chr11	64226142	64226180	64226142	-	High_confidence	38	39	160	14.198273	6.430632	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64224758	64226141	TRPT1|ENST00000542040.1	-	64224758,64226049	64225580,64226141	0.525000
sigmoid_colon_female_adult_51_years	chr17	44813183	44813279	44813218	-	High_confidence	5	5	41	3.638308	3.048779	chr17	44813071	44813355	SINE|Alu|AluSx	-	chr17	44805599	44813305	GJC1|ENST00000587239.5	-	44805599,44807393,44813047	44805837,44807469,44813305	0.926829
sigmoid_colon_female_adult_51_years	chr10	69416579	69416645	69416644	-	High_confidence	14	15	83	7.365354	4.378209	chr10	69416596	69416765	SINE|MIR|MIR3	-	chr10	69404483	69416867	TACR2|ENST00000373306.4	-	69404483,69407083,69408921,69414944,69415931	69405084,69407280,69409075,69415139,69416867	0.939759
sigmoid_colon_female_adult_51_years	chr9	68957146	68957212	68957146	-	RAMPAGE_only	2	2	9	0.798653	2.725481	chr9	68956991	68957380	LTR|ERVL-MaLR|MLT1L	-	chr9	68956725	68975883	STRG.63686.2	-	68956725,68975663	68957211,68975883	0.888889
sigmoid_colon_female_adult_51_years	chr2	171414676	171414677	171414676	-	RAMPAGE_only	5	7	7	0.621174	2.521641	chr2	171414444	171414743	SINE|Alu|AluJb	+	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.714286
sigmoid_colon_female_adult_51_years	chr20	3795750	3795789	3795750	+	High_confidence	23	24	117	10.382487	5.481362	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021872.3	+	3795738,3797621,3798411,3800287,3800461,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.991453
sigmoid_colon_female_adult_51_years	chr3	129559620	129559621	129559620	-	High_confidence	6	6	8	0.709914	2.521641	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	0.875000
sigmoid_colon_female_adult_51_years	chr20	62725057	62725061	62725057	+	High_confidence	17	17	33	2.928394	4.324849	chr20	62724699	62725058	LTR|ERVL-MaLR|MLT1C	-	chr20	62725064	62762771	STRG.110614.3	+	62725064,62754684,62758265,62760017	62725366,62754886,62758356,62762771	0.606061
sigmoid_colon_female_adult_51_years	chr1	147172973	147172993	147172975	+	High_confidence	5	8	14	1.242349	3.324863	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.928571
sigmoid_colon_female_adult_51_years	chr3	180870516	180870521	180870518	-	High_confidence	36	44	72	6.389223	5.476501	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180751303	180870506	STRG.28125.2	-	180751303,180781983,180810409,180847506,180870046	180751410,180782124,180810470,180847624,180870506	0.944444
sigmoid_colon_female_adult_51_years	chr5	149412723	149412751	149412723	+	RAMPAGE_only	2	3	11	0.976131	3.121928	chr5	149412487	149412789	SINE|Alu|AluSx3	+	chr5	149406962	149414097	CARMN|ENST00000518014.1	+	149406962,149410161	149408157,149414097	0.909091
sigmoid_colon_female_adult_51_years	chr10	47743727	47743747	47743727	+	High_confidence	3	3	10	0.887392	2.721928	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.900000
sigmoid_colon_female_adult_51_years	chr1	166850112	166850125	166850123	+	RAMPAGE_only	9	17	34	3.017133	4.265320	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.941176
sigmoid_colon_female_adult_51_years	chr14	81170372	81170414	81170413	-	High_confidence	8	11	41	3.638308	4.296439	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.878049
sigmoid_colon_female_adult_51_years	chr4	86453184	86453254	86453206	-	High_confidence	13	13	90	7.986529	4.536518	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.933333
sigmoid_colon_female_adult_51_years	chr1	19344359	19344410	19344359	-	RAMPAGE_only	8	8	24	2.129741	4.251629	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.791667
sigmoid_colon_female_adult_51_years	chr1	111608351	111608357	111608351	-	High_confidence	3	3	9	0.798653	2.750000	chr1	111607038	111608899	Retroposon|SVA|SVA_D	-	chr1	111599864	111608324	LINC01160|ENST00000441004.5	-	111599864,111602191,111604368,111604628,111608135	111600095,111602333,111604500,111604702,111608324	0.555556
sigmoid_colon_female_adult_51_years	chr7	100349884	100349885	100349884	+	RAMPAGE_only	9	11	13	1.153610	3.180833	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336242	100351900	STRG.53647.10	+	100336242,100338178,100338772,100345864,100349716,100351251	100336337,100338264,100338889,100345968,100349887,100351900	0.692308
sigmoid_colon_female_adult_51_years	chr13	106561950	106561951	106561950	-	High_confidence	17	18	18	1.597306	3.337175	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.833333
sigmoid_colon_female_adult_51_years	chr10	95312917	95313397	95313195	-	RAMPAGE_only	62	65	458	40.642557	6.144697	chr10	95313103	95313210	DNA|hAT-Tip100|UCON132b	+	chr10	95311772	95339327	SORBS1|ENST00000649911.1	-	95311772,95318319,95321962,95339132	95315126,95318432,95322153,95339327	1.000000
sigmoid_colon_female_adult_51_years	chr3	48979523	48979550	48979523	+	RAMPAGE_only	3	3	10	0.887392	2.503258	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.900000
sigmoid_colon_female_adult_51_years	chr9	92536601	92536602	92536601	-	High_confidence	10	10	10	0.887392	2.921928	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.900000
sigmoid_colon_female_adult_51_years	chr3	188225402	188225435	188225406	+	High_confidence	3	3	16	1.419827	3.640224	chr3	188225342	188225427	SINE|MIR|MIR3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.937500
sigmoid_colon_female_adult_51_years	chr20	3795822	3795835	3795822	+	High_confidence	2	2	8	0.709914	2.807355	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.875000
sigmoid_colon_female_adult_51_years	chr12	2190936	2190996	2190984	+	RAMPAGE_only	10	12	28	2.484698	3.838040	chr12	2190694	2191085	LTR|ERVL-MaLR|MLT1J2	-	chr12	2177586	2215322	STRG.78185.1	+	2177586,2191891	2191835,2215322	0.964286
sigmoid_colon_female_adult_51_years	chr4	158173024	158173025	158173024	-	High_confidence	38	38	45	3.993264	4.834209	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.955556
sigmoid_colon_female_adult_51_years	chr12	54400637	54400688	54400637	-	High_confidence	3	3	15	1.331088	3.323231	chr12	54400567	54400680	LINE|L2|L2b	-	chr12	54397365	54400858	ITGA5|ENST00000552387.1	-	54397365,54398596,54399644,54399863	54397487,54398698,54399758,54400858	0.933333
sigmoid_colon_female_adult_51_years	chr16	27243370	27243371	27243370	-	RAMPAGE_only	7	7	10	0.887392	2.646439	chr16	27243362	27243410	LINE|L2|L2c	+	chr16	27233069	27258151	NSMCE1|ENST00000563900.5	-	27233069,27234187,27235177,27257434,27258083	27233147,27234265,27235299,27257581,27258151	0.700000
sigmoid_colon_female_adult_51_years	chr20	44696111	44696112	44696111	-	High_confidence	10	10	11	0.976131	3.121928	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.636364
sigmoid_colon_female_adult_51_years	chr12	45292662	45292710	45292709	+	High_confidence	3	3	18	1.597306	3.616875	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.944444
sigmoid_colon_female_adult_51_years	chr18	36122242	36122258	36122242	-	High_confidence	2	3	8	0.709914	2.521641	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.750000
sigmoid_colon_female_adult_51_years	chr7	158863386	158863400	158863388	+	RAMPAGE_only	3	5	9	0.798653	3.000000	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.666667
sigmoid_colon_female_adult_51_years	chr1	166850177	166850199	166850177	+	RAMPAGE_only	7	7	16	1.419827	3.506891	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.937500
sigmoid_colon_female_adult_51_years	chr15	34588450	34588453	34588452	-	High_confidence	9	16	16	1.419827	3.750000	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.937500
sigmoid_colon_female_adult_51_years	chr1	100268260	100268281	100268280	+	RAMPAGE_only	10	12	16	1.419827	2.899397	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	1.000000
sigmoid_colon_female_adult_51_years	chr9	122393911	122393998	122393979	+	RAMPAGE_only	6	7	24	2.129741	4.136842	chr9	122393886	122394064	LINE|L2|L2a	-	chr9	122375321	122395703	PTGS1|NM_001271165.1	+	122375321,122377898,122378432,122378774,122381370,122381663,122383508,122386445,122390197,122392188	122375444,122378015,122378573,122378918,122381552,122381747,122383755,122386732,122390345,122395703	1.000000
sigmoid_colon_female_adult_51_years	chr2	201116007	201116022	201116007	+	High_confidence	6	6	14	1.242349	3.378783	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	1.000000
sigmoid_colon_female_adult_51_years	chr16	15782670	15782787	15782786	-	High_confidence	21	22	57	5.058135	5.130915	chr16	15782761	15782860	DNA|hAT-Tip100|MER91C	+	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.929825
sigmoid_colon_female_adult_51_years	chr7	43881911	43881948	43881911	-	High_confidence	2	2	7	0.621174	2.521641	chr7	43881785	43881943	LINE|L2|L2	+	chr7	43878943	43881896	URGCP|ENST00000467410.1	-	43878943,43881658	43879260,43881896	1.000000
sigmoid_colon_female_adult_51_years	chr5	149410436	149410523	149410522	+	RAMPAGE_only	7	7	27	2.395959	3.796218	chr5	149410420	149410641	LINE|L1|L1M5	-	chr5	149407244	149412768	CARMN|ENST00000614517.1	+	149407244	149412768	0.962963
sigmoid_colon_female_adult_51_years	chr11	77175259	77175303	77175302	+	High_confidence	9	9	23	2.041002	3.588354	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175242	77189457	STRG.75437.1	+	77175242,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189457	1.000000
sigmoid_colon_female_adult_51_years	chr16	15792764	15792803	15792802	-	High_confidence	5	5	10	0.887392	3.169925	chr16	15792717	15793034	SINE|Alu|AluSz	-	chr16	15790974	15792717	AF001548.3|ENST00000624545.1	-	15790974	15792717	0.800000
sigmoid_colon_female_adult_51_years	chr19	11539669	11539706	11539705	+	High_confidence	3	3	9	0.798653	2.947703	chr19	11539660	11539789	SINE|MIR|MIRb	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	1.000000
sigmoid_colon_female_adult_51_years	chr3	52615437	52615448	52615437	-	High_confidence	2	4	9	0.798653	2.947703	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	1.000000
sigmoid_colon_female_adult_51_years	chr17	2667195	2667196	2667195	+	High_confidence	9	9	10	0.887392	2.725481	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.800000
sigmoid_colon_female_adult_51_years	chr1	155679929	155679930	155679929	-	High_confidence	18	18	18	1.597306	3.308271	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	1.000000
sigmoid_colon_female_adult_51_years	chr4	2867835	2867851	2867841	+	High_confidence	4	4	12	1.064870	3.251629	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
sigmoid_colon_female_adult_51_years	chr16	20736843	20736904	20736882	-	RAMPAGE_only	4	6	16	1.419827	2.789898	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	0.875000
sigmoid_colon_female_adult_51_years	chr18	7946866	7946888	7946878	+	High_confidence	16	17	38	3.372090	4.628108	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.894737
sigmoid_colon_female_adult_51_years	chr9	122164568	122164597	122164595	+	RAMPAGE_only	116	172	343	30.437548	6.803916	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122166767	122200083	MORN5|ENST00000486801.1	+	122166767,122174495,122199884	122166915,122174627,122200083	0.854227
sigmoid_colon_female_adult_51_years	chr14	34536100	34536110	34536109	-	High_confidence	4	4	8	0.709914	2.521641	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.750000
sigmoid_colon_female_adult_51_years	chr3	37058886	37058887	37058886	-	RAMPAGE_only	7	7	10	0.887392	2.921928	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	1.000000
sigmoid_colon_female_adult_51_years	chr1	155343321	155343324	155343321	-	RAMPAGE_only	6	6	11	0.976131	3.095795	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155440719	STRG.6863.5	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155438326,155440489	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155439068,155440719	0.909091
sigmoid_colon_female_adult_51_years	chr6	127330835	127330854	127330835	-	High_confidence	4	4	11	0.976131	3.321928	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.818182
sigmoid_colon_female_adult_51_years	chr18	8376199	8376200	8376199	+	RAMPAGE_only	5	5	7	0.621174	2.807355	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8370932	8379313	PTPRM|ENST00000583153.2	+	8370932,8371759,8376045,8376461,8378264,8379166	8371006,8371810,8376200,8376597,8378414,8379313	0.714286
sigmoid_colon_female_adult_51_years	chr2	232551066	232551106	232551105	+	High_confidence	9	9	27	2.395959	4.106377	chr2	232551133	232551224	SINE|MIR|MIRb	+	chr2	232550806	232567205	EIF4E2|ENST00000454501.1	+	232550806,232556415,232557883,232564246,232566828,232567077	232551218,232556530,232558018,232564351,232566981,232567205	0.962963
sigmoid_colon_female_adult_51_years	chr4	48546120	48546158	48546139	-	High_confidence	3	3	10	0.887392	2.921928	chr4	48546053	48546089	LINE|CR1|X7C_LINE	-	chr4	48521093	48546759	FRYL|ENST00000513401.5	-	48521093,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066	48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546759	1.000000
sigmoid_colon_female_adult_51_years	chr5	151669678	151669719	151669678	-	RAMPAGE_only	12	12	39	3.460829	4.721612	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.923077
sigmoid_colon_female_adult_51_years	chr1	156252925	156252926	156252925	-	High_confidence	7	7	10	0.887392	3.121928	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.800000
sigmoid_colon_female_adult_51_years	chr1	202551736	202551798	202551736	+	RAMPAGE_only	35	38	196	17.392885	6.661811	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.586735
sigmoid_colon_female_adult_51_years	chr8	30812434	30812454	30812453	-	High_confidence	10	10	21	1.863523	3.820889	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785615	30812597	PPP2CB|ENST00000518564.1	-	30785615,30799716,30812319	30785989,30799755,30812597	0.714286
sigmoid_colon_female_adult_51_years	chr22	23705504	23705514	23705513	-	RAMPAGE_only	12	14	20	1.774784	2.900052	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638519	23717267	STRG.112716.1	-	23638519,23652860,23659864,23683724,23686830,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717030	23638942,23652944,23660000,23683867,23686995,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717267	0.950000
sigmoid_colon_female_adult_51_years	chr18	46087018	46087066	46087042	-	High_confidence	5	5	13	1.153610	3.418296	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.846154
sigmoid_colon_female_adult_51_years	chr3	114624931	114625007	114625006	-	High_confidence	13	15	118	10.471226	5.819656	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.728814
sigmoid_colon_female_adult_51_years	chr17	59619894	59619923	59619894	+	High_confidence	139	160	435	38.601555	5.961695	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.949425
sigmoid_colon_female_adult_51_years	chr7	154928492	154928506	154928503	+	High_confidence	10	11	21	1.863523	3.321928	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.952381
sigmoid_colon_female_adult_51_years	chr20	50131130	50131162	50131139	-	High_confidence	62	62	184	16.328014	6.143936	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.989130
sigmoid_colon_female_adult_51_years	chr19	45524114	45524140	45524139	+	High_confidence	4	5	11	0.976131	2.913977	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45524036	45526202	VASP|ENST00000588273.1	+	45524036,45524569,45525945,45526139	45524142,45524660,45526003,45526202	0.545455
sigmoid_colon_female_adult_51_years	chr7	99410146	99410162	99410146	+	High_confidence	5	5	10	0.887392	3.321928	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.900000
sigmoid_colon_female_adult_51_years	chr15	80059915	80059919	80059918	+	High_confidence	51	59	120	10.648705	5.214385	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.958333
sigmoid_colon_female_adult_51_years	chr17	2975660	2975682	2975664	+	RAMPAGE_only	5	6	13	1.153610	3.392747	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2980136	3031071	STRG.97750.1	+	2980136,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921	2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3031071	0.769231
sigmoid_colon_female_adult_51_years	chr20	38985922	38985984	38985983	+	High_confidence	13	13	52	4.614439	4.787731	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38985967	39039721	STRG.109911.4	+	38985967,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38986012,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.923077
sigmoid_colon_female_adult_51_years	chr2	217937115	217937162	217937135	-	High_confidence	12	12	51	4.525700	5.198563	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.705882
sigmoid_colon_female_adult_51_years	chr7	101129443	101129482	101129443	+	RAMPAGE_only	6	6	14	1.242349	2.950212	chr7	101129308	101129614	SINE|Alu|AluSz6	+	chr7	101127605	101136375	STRG.53689.2	+	101127605,101131874,101133694,101135493,101135714	101130654,101132069,101133893,101135594,101136375	0.857143
sigmoid_colon_female_adult_51_years	chr10	28335284	28335320	28335319	-	High_confidence	96	96	335	29.727635	5.206639	chr10	28335237	28335330	SINE|Alu|AluYc	-	chr10	28051096	28335313	STRG.67812.1	-	28051096,28056479,28058494,28059649,28069771,28089670,28119650,28120193,28120593,28124030,28125009,28131559,28147482,28149981,28202152,28238567,28280099,28334869	28054244,28056623,28058603,28059743,28069852,28089841,28119715,28120390,28120668,28124116,28125091,28131691,28147563,28150059,28202271,28238735,28280140,28335313	0.958209
sigmoid_colon_female_adult_51_years	chr1	219218527	219218534	219218533	+	RAMPAGE_only	7	7	15	1.331088	3.056565	chr1	219218401	219218614	DNA|hAT-Charlie|MER30	+	chr1	219173887	219295294	STRG.9069.2	+	219173887,219179146,219193129,219210531,219211491,219218517,219241198,219294060	219173981,219179246,219193251,219210647,219211752,219218712,219241308,219295294	0.733333
sigmoid_colon_female_adult_51_years	chr8	144106357	144106394	144106357	+	High_confidence	9	9	27	2.395959	4.060262	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.925926
sigmoid_colon_female_adult_51_years	chr17	4143193	4143200	4143199	+	High_confidence	40	40	70	6.211745	4.565643	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.971429
sigmoid_colon_female_adult_51_years	chr6	36914662	36914690	36914662	+	RAMPAGE_only	2	2	9	0.798653	2.725481	chr6	36914707	36914996	SINE|Alu|AluSz6	+	chr6	36919442	36928964	STRG.43601.3	+	36919442,36923346,36924693	36919701,36924508,36928964	0.555556
sigmoid_colon_female_adult_51_years	chr17	42403521	42403803	42403661	-	RAMPAGE_only	88	89	373	33.099724	6.653318	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	1.000000
sigmoid_colon_female_adult_51_years	chr1	202582190	202582218	202582190	+	RAMPAGE_only	3	3	17	1.508567	3.051602	chr1	202581884	202582432	LINE|CR1|L3	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	1.000000
sigmoid_colon_female_adult_51_years	chr17	59620042	59620052	59620042	+	High_confidence	7	13	22	1.952263	3.641250	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.909091
sigmoid_colon_female_adult_51_years	chr10	45000487	45000541	45000487	+	High_confidence	2	2	10	0.887392	2.725481	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.900000
sigmoid_colon_female_adult_51_years	chr3	188153246	188153257	188153246	+	High_confidence	3	4	8	0.709914	2.521641	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153874	188406278	LPP|ENST00000430340.5	+	188153874,188225404,188312834,188406111	188154021,188225527,188312918,188406278	0.750000
sigmoid_colon_female_adult_51_years	chr12	15001812	15001839	15001825	+	High_confidence	4	4	12	1.064870	2.688722	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	1.000000
sigmoid_colon_female_adult_51_years	chr3	188883788	188884261	188884260	+	RAMPAGE_only	27	28	431	38.246598	6.778619	chr3	188884141	188884305	SINE|MIR|MIRc	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
sigmoid_colon_female_adult_51_years	chr6	28354041	28354077	28354061	-	High_confidence	5	5	33	2.928394	4.324849	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329610	28354065	ZSCAN31|ENST00000444081.5	-	28329610,28336789,28337798,28353861	28329714,28336943,28337893,28354065	0.606061
sigmoid_colon_female_adult_51_years	chr8	144853500	144853556	144853555	-	High_confidence	6	6	33	2.928394	4.327820	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	0.969697
sigmoid_colon_female_adult_51_years	chrX	73837450	73837451	73837450	-	RAMPAGE_only	7	7	8	0.709914	2.807355	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.750000
sigmoid_colon_female_adult_51_years	chr2	217939269	217939270	217939269	-	RAMPAGE_only	7	7	10	0.887392	2.646439	chr2	217939059	217939291	SINE|MIR|MIR	-	chr2	217803445	217944005	TNS1|ENST00000611415.4	-	217803445,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217830366,217831454,217835090,217836014,217847509,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217906334,217907209,217920194,217943864	217804603,217808107,217808671,217809991,217810319,217812445,217813304,217813816,217814998,217818759,217821938,217830390,217831547,217835166,217836211,217849087,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217906385,217907251,217920236,217944005	0.900000
sigmoid_colon_female_adult_51_years	chr11	65431913	65432065	65431924	+	RAMPAGE_only	9	9	96	8.518964	5.609455	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
sigmoid_colon_female_adult_51_years	chr8	89724818	89724848	89724847	-	High_confidence	4	5	11	0.976131	3.121928	chr8	89724444	89724974	LTR|ERVL-MaLR|MLT1D	-	chr8	89720903	89724930	AF117829.1|ENST00000521996.1	-	89720903,89722014,89724628	89721374,89722156,89724930	0.636364
sigmoid_colon_female_adult_51_years	chr19	9140393	9140428	9140427	+	High_confidence	13	13	44	3.904525	5.050341	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.772727
sigmoid_colon_female_adult_51_years	chr17	47067422	47067456	47067455	-	High_confidence	2	2	6	0.532435	2.584963	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	1.000000
sigmoid_colon_female_adult_51_years	chr6	118651542	118651602	118651592	-	High_confidence	17	17	63	5.590570	5.217370	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	1.000000
sigmoid_colon_female_adult_51_years	chr12	643627	643636	643635	-	High_confidence	7	7	20	1.774784	3.932138	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.600000
sigmoid_colon_female_adult_51_years	chr3	64867218	64867234	64867218	+	RAMPAGE_only	2	2	6	0.532435	2.584963	chr3	64867132	64867368	LTR|ERV1|MER39	-	chr3	64925653	64959938	STRG.23709.5	+	64925653,64929079	64928891,64959938	0.833333
sigmoid_colon_female_adult_51_years	chr1	9743904	9743929	9743904	-	RAMPAGE_only	2	2	9	0.798653	2.500000	chr1	9743549	9743856	SINE|Alu|AluJo	-	chr1	9729027	9751581	CLSTN1|ENST00000435891.5	-	9729027,9731205,9731760,9733400,9733971,9734947,9735466,9735884,9741093,9743883,9744394,9749460,9749763,9751472	9730705,9731390,9731896,9733546,9734142,9735174,9735615,9736042,9741256,9744005,9744643,9749646,9749913,9751581	0.888889
sigmoid_colon_female_adult_51_years	chr6	28354152	28354206	28354205	-	High_confidence	10	11	31	2.750915	4.254196	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.741935
sigmoid_colon_female_adult_51_years	chr3	52482654	52482657	52482654	+	RAMPAGE_only	6	6	13	1.153610	3.022055	chr3	52482568	52482694	DNA|TcMar-Tc2|Kanga1c	+	chr3	52478220	52493068	STRG.23245.4	+	52478220,52478372,52479748,52480183,52480878,52485777,52487195,52489335,52490074,52490704,52491351,52491871	52478282,52478577,52479862,52480295,52484637,52485827,52488605,52489678,52490231,52490833,52491513,52493068	0.923077
sigmoid_colon_female_adult_51_years	chr3	33838256	33838261	33838256	+	RAMPAGE_only	15	15	26	2.307219	3.938722	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.769231
sigmoid_colon_female_adult_51_years	chr16	63618044	63618046	63618044	-	High_confidence	3	6	8	0.709914	2.807355	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63531232	63618044	AC138305.1|ENST00000563855.1	-	63531232,63532816,63617692	63531304,63532931,63618044	0.500000
sigmoid_colon_female_adult_51_years	chr12	91179462	91179549	91179462	-	High_confidence	456	473	2848	252.729263	7.127801	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.701896
sigmoid_colon_female_adult_51_years	chr9	113484732	113484733	113484732	+	RAMPAGE_only	10	11	11	0.976131	3.277613	chr9	113484629	113484751	SINE|MIR|MIR	+	chr9	113463731	113542089	RGS3|ENST00000317613.10	+	113463731,113479490,113483058,113484137,113485624,113495785,113497313,113498024,113505441,113506387,113507286,113508540,113514457,113517540,113522929,113529220,113536795,113541319	113463881,113479541,113483117,113484232,113485693,113495846,113497404,113498080,113505523,113506493,113507638,113508580,113514654,113517624,113523041,113529264,113536918,113542089	0.727273
sigmoid_colon_female_adult_51_years	chrX	5726193	5726199	5726193	-	High_confidence	7	7	12	1.064870	2.663533	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.833333
sigmoid_colon_female_adult_51_years	chr4	5640713	5640721	5640713	-	RAMPAGE_only	2	3	7	0.621174	2.521641	chr4	5640709	5640794	LINE|L2|L2	-	chr4	5574686	5689578	STRG.29150.2	-	5574686,5576239,5584622,5615421,5618477,5622536,5625748,5628558,5631792,5633860,5640513,5663106,5665514,5681259,5685369,5689156	5574772,5576454,5584850,5615544,5618682,5622991,5625908,5628734,5632032,5633964,5640838,5663246,5665649,5681313,5685479,5689578	1.000000
sigmoid_colon_female_adult_51_years	chr22	18149858	18149869	18149865	+	High_confidence	8	9	25	2.218480	2.839080	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
sigmoid_colon_female_adult_51_years	chr1	162781359	162781389	162781388	+	RAMPAGE_only	12	13	30	2.662176	4.164735	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	1.000000
sigmoid_colon_female_adult_51_years	chr6	36540276	36540277	36540276	-	RAMPAGE_only	7	7	8	0.709914	2.521641	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36547468	STRG.43531.2	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540204,36547468	0.750000
sigmoid_colon_female_adult_51_years	chr11	64242546	64242549	64242546	+	High_confidence	8	8	18	1.597306	3.572431	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
sigmoid_colon_female_adult_51_years	chr12	56157322	56157416	56157348	+	High_confidence	18	20	114	10.116270	5.371420	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.956140
sigmoid_colon_female_adult_51_years	chr20	21160833	21160834	21160833	+	RAMPAGE_only	6	8	8	0.709914	2.750000	chr20	21160661	21161021	LTR|ERVL-MaLR|MLT1A0	+	chr20	21145588	21246622	KIZ|ENST00000619179.4	+	21145588,21161870,21162849,21205490,21214534,21229010,21232733,21244244,21246478	21145654,21162507,21163159,21205584,21214700,21229115,21232830,21244288,21246622	0.875000
sigmoid_colon_female_adult_51_years	chr1	166850282	166850302	166850301	+	RAMPAGE_only	4	4	9	0.798653	2.947703	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
sigmoid_colon_female_adult_51_years	chr11	65441801	65442031	65441842	+	RAMPAGE_only	39	39	235	20.853714	6.206513	chr11	65441504	65441864	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
sigmoid_colon_female_adult_51_years	chr18	8714136	8714158	8714155	+	High_confidence	5	5	14	1.242349	3.700440	chr18	8714168	8714357	SINE|MIR|MIRb	+	chr18	8714035	8819171	STRG.102423.1	+	8714035,8718423,8720337,8777832,8783529,8785935,8792997,8796231,8798096,8806892,8812978,8818962	8714249,8718648,8720496,8777892,8784843,8786091,8793120,8796462,8798291,8807060,8813233,8819171	0.785714
sigmoid_colon_female_adult_51_years	chr7	103353930	103353938	103353930	+	High_confidence	4	4	13	1.153610	3.026987	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.923077
sigmoid_colon_female_adult_51_years	chr14	51599919	51600012	51599923	-	High_confidence	13	13	72	6.389223	5.575642	chr14	51599913	51599958	SINE|MIR|MIR3	+	chr14	51546628	51599920	FRMD6-AS2|ENST00000557625.1	-	51546628,51547706,51584165,51599826	51546820,51547883,51584283,51599920	0.666667
sigmoid_colon_female_adult_51_years	chr7	128622517	128622529	128622528	+	RAMPAGE_only	5	6	9	0.798653	2.725481	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.888889
sigmoid_colon_female_adult_51_years	chr11	107441527	107441593	107441583	-	RAMPAGE_only	3	3	18	1.597306	3.572469	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	0.944444
sigmoid_colon_female_adult_51_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	9	9	9	0.798653	2.725481	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
sigmoid_colon_female_adult_51_years	chr7	30568866	30568913	30568912	-	RAMPAGE_only	10	10	22	1.952263	3.516028	chr7	30568321	30569340	LTR|ERV1|MER4-int	+	chr7	30558095	30573088	GARS-DT|ENST00000584621.5	-	30558095,30561465,30563730,30568832,30572999	30559355,30562128,30563998,30568989,30573088	0.909091
sigmoid_colon_female_adult_51_years	chr19	20423689	20423704	20423703	-	RAMPAGE_only	10	13	39	3.460829	4.109138	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.615385
sigmoid_colon_female_adult_51_years	chr7	111413976	111413977	111413976	-	RAMPAGE_only	7	7	11	0.976131	2.521928	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	111413524	111415649	STRG.54285.1	-	111413524	111415649	0.818182
sigmoid_colon_female_adult_51_years	chr17	19386334	19386335	19386334	-	High_confidence	9	11	14	1.242349	3.238901	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.928571
sigmoid_colon_female_adult_51_years	chr11	114651543	114651544	114651543	-	High_confidence	22	22	22	1.952263	3.061482	chr11	114651116	114651893	LTR|ERV1|LTR12	-	chr11	114651140	114651471	STRG.77088.1	-	114651140	114651471	0.909091
sigmoid_colon_female_adult_51_years	chr16	15798664	15798686	15798664	-	RAMPAGE_only	771	870	1632	144.822387	6.987492	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.860294
sigmoid_colon_female_adult_51_years	chr16	27333283	27333288	27333283	+	High_confidence	21	28	48	4.259482	5.136842	chr16	27333168	27333399	LINE|CR1|L3	-	chr16	27333295	27364777	STRG.95758.4	+	27333295,27340185,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27334417,27340273,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27364777	0.854167
sigmoid_colon_female_adult_51_years	chr19	12800944	12800991	12800944	-	High_confidence	5	5	18	1.597306	3.852169	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12799861	12800461	PRDX2|ENST00000478908.1	-	12799861,12800176	12799989,12800461	0.555556
sigmoid_colon_female_adult_51_years	chr19	49539150	49539151	49539150	+	RAMPAGE_only	4	4	6	0.532435	2.584963	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49527617	49543638	RCN3|ENST00000270645.7	+	49527617,49528466,49534192,49537032,49539118,49542552,49543105	49528058,49528714,49534395,49537205,49539179,49542752,49543638	1.000000
sigmoid_colon_female_adult_51_years	chr8	27977120	27977126	27977125	-	High_confidence	20	26	30	2.662176	4.256565	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27869881	27977221	STRG.57555.2	-	27869881,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977221	0.766667
sigmoid_colon_female_adult_51_years	chr10	88939876	88939905	88939904	-	RAMPAGE_only	4	6	13	1.153610	3.026987	chr10	88939875	88939917	LINE|L2|L2a	+	chr10	88935073	88952773	ACTA2|ENST00000224784.10	-	88935073,88938060,88939506,88941228,88941784,88943796,88947257,88948801,88952730	88935366,88938242,88939698,88941390,88941869,88943907,88947386,88948953,88952773	0.769231
sigmoid_colon_female_adult_51_years	chr17	47067487	47067513	47067498	-	High_confidence	95	101	338	29.993852	5.582477	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.976331
sigmoid_colon_female_adult_51_years	chr6	43013348	43013393	43013392	-	High_confidence	14	14	25	2.218480	4.243856	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
sigmoid_colon_female_adult_51_years	chr5	149425499	149425685	149425684	+	RAMPAGE_only	93	95	442	39.222730	6.184274	chr5	149425592	149425831	DNA|hAT-Charlie|MER113	-	chr5	149406878	149428678	CARMN|ENST00000602964.1	+	149406878,149420480	149407078,149428678	1.000000
sigmoid_colon_female_adult_51_years	chr21	28446260	28446335	28446260	-	High_confidence	2	3	12	1.064870	3.251629	chr21	28446124	28446278	LTR|ERVL-MaLR|THE1D	+	chr21	28438539	28446655	STRG.111396.1	-	28438539	28446655	1.000000
sigmoid_colon_female_adult_51_years	chr14	34462751	34462795	34462794	-	High_confidence	5	5	10	0.887392	2.646439	chr14	34462624	34462760	LINE|L2|L2a	-	chr14	34432788	34462356	SPTSSA|ENST00000298130.4	-	34432788,34462095	34435304,34462356	0.800000
sigmoid_colon_female_adult_51_years	chr8	99893471	99893528	99893471	-	High_confidence	5	7	27	2.395959	3.791925	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.962963
sigmoid_colon_female_adult_51_years	chrX	73841946	73841974	73841946	-	High_confidence	3	3	11	0.976131	3.095795	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.818182
sigmoid_colon_female_adult_51_years	chr11	68180141	68180142	68180141	-	High_confidence	11	11	13	1.153610	3.085055	chr11	68180123	68180214	SINE|MIR|MIRc	+	chr11	68171118	68180165	KMT5B|ENST00000323599.10	-	68171118,68171231,68171542,68173803,68174087,68175017,68180131	68171151,68171251,68171709,68173913,68174210,68175183,68180165	1.000000
sigmoid_colon_female_adult_51_years	chr1	1655395	1655411	1655409	-	RAMPAGE_only	22	39	82	7.276615	5.719299	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.682927
sigmoid_colon_female_adult_51_years	chr11	123060124	123060219	123060168	-	High_confidence	20	20	148	13.133403	4.925909	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	1.000000
sigmoid_colon_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	45	45	45	3.993264	3.865691	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.955556
sigmoid_colon_female_adult_51_years	chr9	111284874	111284875	111284874	-	High_confidence	39	39	53	4.703178	4.544353	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111272836	111284861	STRG.65196.1	-	111272836,111284619	111272965,111284861	0.981132
sigmoid_colon_female_adult_51_years	chr19	3062922	3062983	3062922	-	High_confidence	26	30	108	9.583834	5.449927	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	1.000000
sigmoid_colon_female_adult_51_years	chr17	77390290	77390295	77390290	+	RAMPAGE_only	9	9	21	1.863523	3.499228	chr17	77390212	77390366	SINE|Alu|AluYc	+	chr17	77380122	77402483	SEPT9|ENST00000589140.1	+	77380122,77402058	77380249,77402483	0.857143
sigmoid_colon_female_adult_51_years	chr8	56559496	56559497	56559496	-	High_confidence	14	15	16	1.419827	3.640224	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56518320	56559671	LINC00968|ENST00000499425.1	-	56518320,56520120,56559452	56520020,56520567,56559671	0.500000
sigmoid_colon_female_adult_51_years	chr2	177837042	177837129	177837088	-	RAMPAGE_only	2	2	12	1.064870	2.913977	chr2	177837020	177837462	LTR|ERV1|HUERS-P3b-int	+	chr2	177629245	177888738	PDE11A|ENST00000389683.7	-	177629245,177663865,177669492,177675454,177680825,177697331,177701120,177711768,177727657,177728025,177769322,177816828,177817857,177820219,177840250,177875858,177888618	177629562,177663949,177669567,177675518,177680903,177697432,177701211,177711878,177727765,177728172,177769373,177816921,177817925,177820295,177840383,177875923,177888738	0.583333
sigmoid_colon_female_adult_51_years	chr12	104030726	104030727	104030726	+	High_confidence	10	10	13	1.153610	3.251629	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.846154
sigmoid_colon_female_adult_51_years	chr17	47056719	47056736	47056725	-	RAMPAGE_only	4	4	14	1.242349	2.896292	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.857143
sigmoid_colon_female_adult_51_years	chr8	116648828	116648865	116648828	-	RAMPAGE_only	6	6	23	2.041002	4.175736	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
sigmoid_colon_female_adult_51_years	chr19	47780083	47780108	47780107	+	High_confidence	10	14	23	2.041002	4.175736	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.782609
sigmoid_colon_female_adult_51_years	chr9	123179103	123179131	123179130	-	RAMPAGE_only	6	6	13	1.153610	3.026987	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	1.000000
sigmoid_colon_female_adult_51_years	chr19	3047786	3047815	3047814	-	High_confidence	4	4	13	1.153610	2.661226	chr19	3047758	3047946	LINE|L2|L2a	+	chr19	2997637	3047635	TLE2|NM_001144761.1	-	2997637,3002352,3005436,3005720,3006419,3008868,3009541,3011021,3013668,3014569,3015652,3017839,3019282,3019698,3025019,3027828,3028318,3028705,3045725,3047562	2997955,3002503,3005584,3005968,3006669,3008945,3009702,3011160,3013818,3014614,3015760,3017859,3019466,3019773,3025082,3027873,3028382,3028803,3045799,3047635	0.923077
sigmoid_colon_female_adult_51_years	chr12	109112902	109112928	109112927	+	High_confidence	8	8	25	2.218480	3.783465	chr12	109112836	109113146	DNA|hAT-Charlie|MER58B	-	chr12	109112637	109139910	STRG.83080.25	+	109112637,109139396	109113415,109139910	0.880000
sigmoid_colon_female_adult_51_years	chr9	130268674	130268700	130268681	+	High_confidence	16	16	69	6.123005	5.454822	chr9	130268629	130268697	LINE|L2|L2b	-	chr9	130268551	130362368	STRG.66194.3	+	130268551,130284602,130285157,130286187,130294854,130295665,130296673,130299024,130302856,130303486,130304729,130306128,130306810,130307452,130309911,130319494,130320355,130320775,130321786,130325594,130325810,130327309,130333880,130337893,130341110,130342349,130347165,130348544,130348983,130349536,130351422,130352926,130354762,130355745,130356087,130357833,130358389,130359318,130360427,130362007	130268731,130284673,130285316,130286310,130295026,130295772,130296794,130299288,130303001,130303608,130305002,130306270,130306938,130307566,130310061,130319695,130320451,130320903,130321931,130325707,130325970,130327475,130334109,130338021,130341365,130342436,130347360,130348675,130349131,130349663,130351577,130353205,130355044,130355854,130356257,130357988,130358486,130359414,130360604,130362368	0.942029
sigmoid_colon_female_adult_51_years	chr11	43881056	43881091	43881087	+	High_confidence	9	11	24	2.129741	4.175736	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.708333
sigmoid_colon_female_adult_51_years	chr19	49086520	49086559	49086520	+	High_confidence	57	61	114	10.116270	5.012905	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.973684
sigmoid_colon_female_adult_51_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	8	9	11	0.976131	3.121928	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.727273
sigmoid_colon_female_adult_51_years	chr2	179043807	179043808	179043807	-	RAMPAGE_only	6	6	8	0.709914	2.750000	chr2	179042647	179044414	LINE|L1|L1PA10	+	chr2	178829756	179050059	CCDC141|NM_173648.3	-	178829756,178836893,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900,178886751,178888526,178905328,178918712,178944534,178961229,178975056,178978483,179047283,179049839	178834440,178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178885092,178886871,178888668,178905501,178918907,178944651,178961483,178975165,178978675,179047406,179050059	0.875000
sigmoid_colon_female_adult_51_years	chr9	20658314	20658339	20658316	+	High_confidence	5	8	22	1.952263	3.134871	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.954545
sigmoid_colon_female_adult_51_years	chr3	141429538	141429553	141429538	+	RAMPAGE_only	5	6	13	1.153610	3.418296	chr3	141429492	141430039	LINE|L2|L2a	-	chr3	141431722	141442722	ZBTB38|ENST00000509813.1	+	141431722,141442388	141432243,141442722	0.538462
sigmoid_colon_female_adult_51_years	chr12	8697182	8697216	8697215	+	High_confidence	4	4	8	0.709914	2.521641	chr12	8697043	8697239	SINE|MIR|MIRc	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.625000
sigmoid_colon_female_adult_51_years	chrX	16712889	16712959	16712922	-	High_confidence	6	6	34	3.017133	4.300554	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.764706
sigmoid_colon_female_adult_51_years	chr12	10710653	10710654	10710653	-	High_confidence	18	19	20	1.774784	3.246899	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.850000
sigmoid_colon_female_adult_51_years	chr22	44181149	44181178	44181149	+	High_confidence	3	3	9	0.798653	2.500000	chr22	44181132	44181213	LINE|L2|L2a	-	chr22	44181335	44206622	PARVG|ENST00000475485.6	+	44181335,44181741,44183317,44185807,44186576,44189113,44190550,44192048,44196156,44196346,44198620,44205756,44206316	44181370,44181917,44183408,44185872,44187878,44189254,44190666,44192129,44196213,44196415,44198722,44205829,44206622	0.888889
sigmoid_colon_female_adult_51_years	chr2	229586806	229586891	229586885	-	High_confidence	6	10	43	3.815786	4.707677	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229580153	229587177	DNER|ENST00000482831.1	-	229580153,229585857,229586693	229580344,229586024,229587177	0.697674
sigmoid_colon_female_adult_51_years	chr14	68947559	68947560	68947559	-	High_confidence	9	9	14	1.242349	3.182006	chr14	68947337	68947577	SINE|MIR|MIRb	-	chr14	68910019	68947548	ACTN1|ENST00000553779.5	-	68910019,68912155,68921005,68925557,68947363	68910042,68912242,68921125,68925672,68947548	0.785714
sigmoid_colon_female_adult_51_years	chr2	38515496	38515515	38515497	-	High_confidence	10	13	36	3.194611	4.572469	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.944444
sigmoid_colon_female_adult_51_years	chr7	95594289	95594303	95594289	-	RAMPAGE_only	3	3	8	0.709914	2.500000	chr7	95594230	95594384	SINE|MIR|MIRb	+	chr7	95584374	95596460	STRG.53293.3	-	95584374,95587009,95587417,95589639,95591987,95592510,95592759,95593698,95596163	95585781,95587123,95587825,95589716,95592065,95592597,95592944,95595164,95596460	1.000000
sigmoid_colon_female_adult_51_years	chr15	92914950	92914959	92914958	+	High_confidence	5	6	11	0.976131	2.913977	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	1.000000
sigmoid_colon_female_adult_51_years	chr2	48479481	48479482	48479481	+	High_confidence	17	18	20	1.774784	3.584184	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48479396	48515386	STRG.12652.2	+	48479396,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515386	0.950000
sigmoid_colon_female_adult_51_years	chr2	229232042	229232054	229232053	-	High_confidence	24	25	57	5.058135	5.398594	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.754386
sigmoid_colon_female_adult_51_years	chr16	81181319	81181331	81181330	-	High_confidence	24	24	42	3.727047	4.515312	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.928571
sigmoid_colon_female_adult_51_years	chr11	65444302	65444375	65444346	+	RAMPAGE_only	3	3	18	1.597306	3.947703	chr11	65444390	65444497	SINE|MIR|MIR1_Amn	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
sigmoid_colon_female_adult_51_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	14	14	14	1.242349	3.324863	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.785714
sigmoid_colon_female_adult_51_years	chr5	55851361	55851365	55851361	+	High_confidence	3	3	8	0.709914	2.807355	chr5	55851124	55851720	DNA|TcMar-Tigger|Tigger17a	-	chr5	55851378	55909141	IL31RA|NM_001297570.1	+	55851378,55859508,55868790,55872269,55883043,55889969,55896349,55899915,55906105,55907358,55908264	55851633,55859599,55868908,55872451,55883195,55890135,55896429,55900132,55906288,55907460,55909141	0.875000
sigmoid_colon_female_adult_51_years	chr5	32403115	32403167	32403115	-	RAMPAGE_only	7	9	28	2.484698	4.107011	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
sigmoid_colon_female_adult_51_years	chr17	77127872	77127873	77127872	+	High_confidence	9	9	14	1.242349	3.324863	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.785714
sigmoid_colon_female_adult_51_years	chr5	151687237	151687251	151687237	-	High_confidence	2	2	8	0.709914	2.521641	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.875000
sigmoid_colon_female_adult_51_years	chr1	220032401	220032406	220032401	-	RAMPAGE_only	3	3	8	0.709914	2.750000	chr1	220032081	220032353	SINE|Alu|AluY	-	chr1	219987295	220046451	EPRS|ENST00000609181.5	-	219987295,219988589,219996982,220001137,220005247,220006105,220007201,220010945,220018125,220018448,220018994,220019987,220022346,220024263,220025131,220030385,220032386,220033501,220034913,220040184,220046342	219987404,219988823,219997342,220001255,220005360,220006313,220007338,220011056,220018146,220018508,220019079,220020221,220022518,220024456,220025258,220030480,220032526,220033658,220035013,220040269,220046451	1.000000
sigmoid_colon_female_adult_51_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	7	8	8	0.709914	3.000000	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888512	77933384	NEXN|ENST00000401035.7	+	77888512,77916054,77917959,77918124,77925187,77926413,77926715,77929315,77933281	77888759,77916133,77918038,77918273,77925229,77926611,77926892,77929504,77933384	0.875000
sigmoid_colon_female_adult_51_years	chr12	7111504	7111505	7111504	+	RAMPAGE_only	6	7	7	0.621174	2.521641	chr12	7111409	7111556	SINE|Alu|AluJb	+	chr12	7108570	7121027	C1RL-AS1|ENST00000382215.3	+	7108570,7110297,7111024,7112006,7115129,7118898,7119499,7120505	7108947,7110572,7111606,7112064,7115219,7119026,7119553,7121027	0.714286
sigmoid_colon_female_adult_51_years	chr15	42675562	42675613	42675562	+	High_confidence	5	5	14	1.242349	3.392747	chr15	42675586	42675640	LINE|L2|L2a	+	chr15	42675495	42682213	STARD9|ENST00000562139.1	+	42675495,42675871,42681421,42682103	42675746,42675975,42681612,42682213	0.714286
sigmoid_colon_female_adult_51_years	chr21	36005313	36005320	36005313	+	High_confidence	3	3	7	0.621174	2.521641	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	1.000000
sigmoid_colon_female_adult_51_years	chr15	65244454	65244455	65244454	-	RAMPAGE_only	20	21	28	2.484698	4.060262	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.964286
sigmoid_colon_female_adult_51_years	chr5	149420252	149420350	149420349	+	RAMPAGE_only	7	7	30	2.662176	4.090234	chr5	149420257	149420473	SINE|MIR|MIRb	-	chr5	149406963	149424381	STRG.40445.9	+	149406963,149420480,149424089	149407078,149423639,149424381	0.933333
sigmoid_colon_female_adult_51_years	chr3	152267291	152267467	152267358	-	RAMPAGE_only	6	6	62	5.501831	4.784452	chr3	152267213	152267496	LINE|L2|L2c	+	chr3	152262615	152269555	MBNL1-AS1|ENST00000608395.1	-	152262615,152269427	152269072,152269555	0.903226
sigmoid_colon_female_adult_51_years	chr22	49657443	49657462	49657461	-	High_confidence	7	9	15	1.331088	3.093069	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49436223	49657457	C22orf34|ENST00000416411.1	-	49436223,49440875,49657404	49436375,49441212,49657457	0.733333
sigmoid_colon_female_adult_51_years	chr17	50737306	50737333	50737306	+	RAMPAGE_only	3	3	12	1.064870	3.188722	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50740266	50744808	LUC7L3|ENST00000507503.1	+	50740266,50741101,50741656,50743705,50744651	50740345,50741246,50741731,50743810,50744808	0.750000
sigmoid_colon_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	459	523	720	63.892229	5.769858	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	1.000000
sigmoid_colon_female_adult_51_years	chr5	109383417	109383463	109383446	-	High_confidence	4	4	16	1.419827	3.875000	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
sigmoid_colon_female_adult_51_years	chr1	176162895	176162937	176162936	-	RAMPAGE_only	14	15	28	2.484698	4.280395	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	176116645	176206440	COP1|ENST00000491600.5	-	176116645,176135009,176136487,176149005,176162868,176163814,176168664,176175909,176184632,176206348	176116681,176135086,176136547,176149074,176162988,176163891,176168748,176176007,176184692,176206440	0.714286
sigmoid_colon_female_adult_51_years	chr7	80369531	80369569	80369531	+	High_confidence	7	7	19	1.686045	2.855954	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.894737
sigmoid_colon_female_adult_51_years	chr4	87524562	87524573	87524562	-	RAMPAGE_only	4	4	10	0.887392	2.947703	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87473417	87529092	SPARCL1|ENST00000503414.5	-	87473417,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87497130,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87497239,87499585,87529092	0.800000
sigmoid_colon_female_adult_51_years	chr9	106278220	106278221	106278220	+	High_confidence	5	5	7	0.621174	2.584963	chr9	106277947	106278267	LINE|RTE-X|L4_C_Mam	+	chr9	106278251	106279154	STRG.65069.1	+	106278251,106279094	106278472,106279154	0.714286
sigmoid_colon_female_adult_51_years	chr9	13386132	13386133	13386132	+	RAMPAGE_only	33	33	44	3.904525	4.629412	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.931818
sigmoid_colon_female_adult_51_years	chr19	17276864	17276865	17276864	+	High_confidence	6	6	6	0.532435	2.584963	chr19	17276797	17276897	DNA|hAT-Ac|OldhAT1	-	chr19	17276813	17279342	BABAM1|ENST00000601232.1	+	17276813,17277383,17278844	17276909,17277479,17279342	1.000000
sigmoid_colon_female_adult_51_years	chr3	123884246	123884247	123884246	-	High_confidence	5	5	8	0.709914	3.000000	chr3	123883879	123884307	LINE|L1|L1M4b	+	chr3	123612295	123884302	MYLK|NM_053025.3	-	123612295,123618638,123620206,123626817,123629473,123638070,123640286,123647223,123648970,123649161,123657125,123664104,123666218,123667136,123682223,123692734,123700019,123701437,123707753,123708697,123709755,123722127,123725943,123732895,123733686,123735397,123737377,123738896,123739952,123752330,123793676,123831547,123876558,123884205	123614349,123618770,123620336,123626941,123629626,123638194,123640504,123647427,123649064,123649194,123657428,123664258,123666346,123667187,123682310,123692851,123701005,123701509,123708003,123708895,123709893,123722280,123726078,123733102,123734222,123735416,123737543,123739062,123740001,123752538,123793844,123831670,123876617,123884302	0.875000
sigmoid_colon_female_adult_51_years	chr8	47360804	47360819	47360804	+	High_confidence	4	4	9	0.798653	3.000000	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47440397	SPIDR|ENST00000521918.6	+	47360818,47396375,47407860,47440322	47360949,47396626,47407961,47440397	0.666667
sigmoid_colon_female_adult_51_years	chr20	62366978	62366999	62366998	-	High_confidence	3	5	14	1.242349	3.238901	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.928571
sigmoid_colon_female_adult_51_years	chr16	20674497	20674498	20674497	+	High_confidence	15	16	16	1.419827	3.327820	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.875000
sigmoid_colon_female_adult_51_years	chr12	53464774	53464834	53464774	+	RAMPAGE_only	4	6	18	1.597306	3.454822	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.666667
sigmoid_colon_female_adult_51_years	chr14	100138722	100138747	100138746	+	RAMPAGE_only	3	3	9	0.798653	3.169925	chr14	100138741	100139027	LINE|L2|L2b	-	chr14	100019381	100140117	EVL|ENST00000544450.6	+	100019381,100084686,100097480,100123538,100126706,100128518,100129562,100132718,100135904,100137577,100137739	100019687,100084855,100097658,100123602,100126771,100128748,100129684,100132779,100135968,100137644,100140117	0.666667
sigmoid_colon_female_adult_51_years	chr20	37297344	37297401	37297344	+	High_confidence	10	11	24	2.129741	3.754442	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.916667
sigmoid_colon_female_adult_51_years	chr22	50785222	50785237	50785222	+	RAMPAGE_only	6	6	13	1.153610	3.022055	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.923077
sigmoid_colon_female_adult_51_years	chr9	39810098	39810117	39810098	-	High_confidence	4	4	14	1.242349	3.324863	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39777349	39810097	GLIDR|ENST00000638724.1	-	39777349,39778893,39809485,39809730	39778566,39778944,39809615,39810097	0.785714
sigmoid_colon_female_adult_51_years	chr9	129488837	129488857	129488856	+	High_confidence	6	6	25	2.218480	3.943465	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	1.000000
sigmoid_colon_female_adult_51_years	chr8	53523862	53523964	53523862	-	High_confidence	14	16	70	6.211745	5.622876	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.971429
sigmoid_colon_female_adult_51_years	chr2	219421085	219421128	219421085	+	RAMPAGE_only	3	3	15	1.331088	3.323231	chr2	219420988	219421091	SINE|MIR|MIRc	+	chr2	219418376	219426739	DES|NM_001927.3	+	219418376,219420094,219420250,219420494,219420827,219421339,219423776,219425662,219425948	219419040,219420155,219420346,219420656,219420953,219421560,219423820,219425745,219426739	0.600000
sigmoid_colon_female_adult_51_years	chr9	129489125	129489128	129489125	+	High_confidence	3	4	7	0.621174	2.521641	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	1.000000
sigmoid_colon_female_adult_51_years	chr21	34512209	34512219	34512209	-	High_confidence	5	5	9	0.798653	2.750000	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.888889
sigmoid_colon_female_adult_51_years	chr16	85804559	85804563	85804559	+	High_confidence	4	4	10	0.887392	2.641604	chr16	85804349	85804655	SINE|Alu|AluSc8	-	chr16	85805068	85807031	COX4I1|ENST00000562929.1	+	85805068,85805746,85806737	85805108,85805864,85807031	0.500000
sigmoid_colon_female_adult_51_years	chr2	219419860	219419878	219419876	+	High_confidence	11	14	25	2.218480	3.943465	chr2	219419757	219419880	LINE|L2|L2b	-	chr2	219420044	219423820	DES|ENST00000477226.5	+	219420044,219420250,219420494,219420827,219421339,219423776	219420155,219420346,219420656,219420953,219421560,219423820	0.720000
sigmoid_colon_female_adult_51_years	chr8	11808214	11808241	11808224	+	High_confidence	2	2	9	0.798653	3.000000	chr8	11807810	11808255	LTR|ERV1|MER31B	-	chr8	11808416	11838967	FDFT1|ENST00000525954.5	+	11808416,11809666,11821749,11826023,11830243,11831517,11838387	11808891,11809850,11821878,11826215,11830420,11831670,11838967	0.777778
sigmoid_colon_female_adult_51_years	chr2	48479384	48479385	48479384	+	High_confidence	11	11	13	1.153610	3.238901	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48479396	48515386	STRG.12652.2	+	48479396,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515386	1.000000
sigmoid_colon_female_adult_51_years	chr3	195696374	195696388	195696374	+	High_confidence	4	5	12	1.064870	2.918296	chr3	195696374	195696623	LINE|L1|L1PA7	+	chr3	195696436	195708504	MUC20-OT1|ENST00000620737.3	+	195696436,195699029,195708133	195696589,195699207,195708504	0.916667
sigmoid_colon_female_adult_51_years	chr2	9422817	9422818	9422817	-	High_confidence	8	8	10	0.887392	2.721928	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NM_001319068.1	-	9405680,9407448,9408112,9412268,9414177,9418625,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9422660	0.800000
sigmoid_colon_female_adult_51_years	chr1	202582608	202582700	202582663	+	RAMPAGE_only	12	12	51	4.525700	5.084098	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.941176
sigmoid_colon_female_adult_51_years	chr6	117998926	117998927	117998926	+	High_confidence	103	111	145	12.867185	5.299356	chr6	117996379	117998927	LINE|L1|L1P1	+	chr6	117998974	117999448	AL450405.1|ENST00000443998.1	+	117998974	117999448	0.903448
sigmoid_colon_female_adult_51_years	chr11	65434368	65434403	65434368	+	RAMPAGE_only	7	8	18	1.597306	2.974938	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
sigmoid_colon_female_adult_51_years	chr14	100829513	100829610	100829513	+	High_confidence	4	4	15	1.331088	3.640224	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.933333
sigmoid_colon_female_adult_51_years	chr9	68975752	68975846	68975842	-	High_confidence	47	48	172	15.263144	5.725813	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.750000
sigmoid_colon_female_adult_51_years	chr14	81192654	81192745	81192681	-	RAMPAGE_only	8	8	51	4.525700	4.927327	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	1.000000
sigmoid_colon_female_adult_51_years	chr16	86490425	86490479	86490440	-	High_confidence	3	7	18	1.597306	3.454822	chr16	86490288	86490466	LTR|ERVL-MaLR|MLT1F1	-	chr16	86487705	86490879	FENDRR|ENST00000598996.2	-	86487705,86490852	86490513,86490879	0.500000
sigmoid_colon_female_adult_51_years	chr1	1721636	1721637	1721636	-	RAMPAGE_only	8	11	11	0.976131	3.095795	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1635225	1659097	CDK11B|NM_033487.2	-	1635225,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1649637,1652566,1655484,1657498,1659097	0.636364
sigmoid_colon_female_adult_51_years	chr12	52056964	52057007	52056990	+	High_confidence	3	3	18	1.597306	3.503258	chr12	52056859	52057005	DNA|hAT-Tip100|MER91A	-	chr12	52056688	52057471	NR4A1|ENST00000565848.1	+	52056688,52057351	52057259,52057471	0.666667
sigmoid_colon_female_adult_51_years	chr6	2272808	2272842	2272841	+	RAMPAGE_only	3	3	8	0.709914	2.750000	chr6	2272484	2273172	LTR|ERV1|LTR78	+	chr6	2245852	2273648	STRG.41742.6	+	2245852,2248836,2263600,2271815	2245930,2248926,2263684,2273648	0.875000
sigmoid_colon_female_adult_51_years	chr5	133089637	133089678	133089677	+	RAMPAGE_only	17	20	34	3.017133	4.771143	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.941176
sigmoid_colon_female_adult_51_years	chr6	111387800	111387824	111387800	-	RAMPAGE_only	4	4	10	0.887392	2.503258	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.900000
sigmoid_colon_female_adult_51_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	104	107	107	9.495095	4.224935	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.971963
sigmoid_colon_female_adult_51_years	chr16	2757801	2757857	2757801	+	High_confidence	5	5	29	2.573437	4.487123	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
sigmoid_colon_female_adult_51_years	chr12	9065162	9065174	9065173	+	High_confidence	5	6	13	1.153610	3.084963	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.923077
sigmoid_colon_female_adult_51_years	chr14	77710855	77710890	77710889	+	High_confidence	3	3	7	0.621174	2.521641	chr14	77710914	77711213	LINE|L1|L1MA1	+	chr14	77710643	77717584	SLIRP|ENST00000556956.1	+	77710643,77715771,77717495	77710896,77715879,77717584	1.000000
sigmoid_colon_female_adult_51_years	chr14	58424069	58424078	58424069	-	RAMPAGE_only	3	3	7	0.621174	2.521641	chr14	58423952	58424081	LINE|CR1|L3	-	chr14	58408663	58427114	TIMM9|ENST00000556007.6	-	58408663,58410842,58411906,58424007,58427053	58409099,58410938,58411971,58424095,58427114	1.000000
sigmoid_colon_female_adult_51_years	chr1	1655448	1655478	1655448	-	RAMPAGE_only	7	7	16	1.419827	3.875000	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.937500
sigmoid_colon_female_adult_51_years	chr11	72111440	72111467	72111466	-	High_confidence	4	4	13	1.153610	3.085055	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72107158	72111443	ANAPC15|ENST00000543050.5	-	72107158,72110087,72110543,72111156,72111411	72107605,72110225,72110603,72111286,72111443	1.000000
sigmoid_colon_female_adult_51_years	chr11	65181222	65181233	65181222	+	High_confidence	3	3	7	0.621174	2.584963	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.857143
sigmoid_colon_female_adult_51_years	chr14	100829459	100829465	100829464	+	High_confidence	3	4	11	0.976131	3.121928	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.636364
sigmoid_colon_female_adult_51_years	chr20	34369406	34369454	34369406	+	RAMPAGE_only	1	1	10	0.887392	3.121928	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	1.000000
sigmoid_colon_female_adult_51_years	chr1	162781221	162781287	162781286	+	RAMPAGE_only	17	17	57	5.058135	4.994680	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.982456
sigmoid_colon_female_adult_51_years	chr6	79631273	79631329	79631302	+	High_confidence	46	47	168	14.908187	6.001529	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.994048
sigmoid_colon_female_adult_51_years	chr2	48529375	48529393	48529385	+	High_confidence	11	11	34	3.017133	4.160705	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	0.970588
sigmoid_colon_female_adult_51_years	chr20	8649441	8649442	8649441	+	RAMPAGE_only	6	8	9	0.798653	2.500000	chr20	8649465	8649857	LTR|ERVL-MaLR|MSTC	+	chr20	8658620	8968360	PLCB1|ENST00000487210.5	+	8658620,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448,8788632,8789517,8790174,8802055,8962195,8965089,8967219	8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788525,8788722,8789575,8790261,8802173,8963010,8965151,8968360	0.888889
sigmoid_colon_female_adult_51_years	chr1	111608624	111608667	111608624	-	High_confidence	2	2	7	0.621174	2.521641	chr1	111607038	111608899	Retroposon|SVA|SVA_D	-	chr1	111604379	111608723	LINC01160|ENST00000453988.1	-	111604379,111604628,111608212	111604500,111604702,111608723	0.857143
sigmoid_colon_female_adult_51_years	chr3	195688556	195688579	195688578	+	High_confidence	3	4	8	0.709914	2.521641	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688520	195708807	MUC20-OT1|ENST00000630417.2	+	195688520,195689338,195699029,195708133,195708746	195688797,195689438,195699207,195708435,195708807	0.625000
sigmoid_colon_female_adult_51_years	chr3	15738511	15738512	15738511	+	High_confidence	1159	1186	1195	106.043353	4.621131	chr3	15738158	15739435	LTR|ERVK|MER11B	-	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.987448
sigmoid_colon_female_adult_51_years	chr7	116239250	116239253	116239250	-	High_confidence	73	93	167	14.819448	6.370545	chr7	116238900	116239327	LTR|ERVL-MaLR|MLT1E2	-	chr7	116237928	116239249	AC073130.2|ENST00000456289.5	-	116237928,116239014	116238276,116239249	0.652695
sigmoid_colon_female_adult_51_years	chr2	229586981	229587004	229586995	-	High_confidence	3	3	8	0.709914	2.521641	chr2	229586987	229587184	LINE|CR1|L3b	+	chr2	229580153	229587177	DNER|ENST00000482831.1	-	229580153,229585857,229586693	229580344,229586024,229587177	0.750000
sigmoid_colon_female_adult_51_years	chr20	25296857	25296931	25296915	+	RAMPAGE_only	12	12	59	5.235613	4.787233	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	1.000000
sigmoid_colon_female_adult_51_years	chr9	123179220	123179221	123179220	-	RAMPAGE_only	10	10	10	0.887392	2.846439	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.900000
sigmoid_colon_female_adult_51_years	chr12	8668603	8668621	8668620	+	RAMPAGE_only	11	13	29	2.573437	4.521641	chr12	8668440	8668935	LTR|ERVL-MaLR|MLT1F2	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.517241
sigmoid_colon_female_adult_51_years	chr19	35115816	35115840	35115816	+	High_confidence	4	4	10	0.887392	2.947703	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.700000
sigmoid_colon_female_adult_51_years	chr21	29077477	29077501	29077486	+	High_confidence	6	11	30	2.662176	3.521641	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.700000
sigmoid_colon_female_adult_51_years	chr5	149427844	149428163	149427844	+	RAMPAGE_only	25	26	515	45.700692	6.033143	chr5	149427709	149428005	SINE|Alu|AluSx	+	chr5	149406878	149428678	CARMN|ENST00000602964.1	+	149406878,149420480	149407078,149428678	0.992233
sigmoid_colon_female_adult_51_years	chr7	107580245	107580267	107580264	+	High_confidence	189	191	949	84.213508	6.804124	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.950474
sigmoid_colon_female_adult_51_years	chr9	98943575	98943583	98943575	+	High_confidence	9	10	31	2.750915	4.284684	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
sigmoid_colon_female_adult_51_years	chr15	75879161	75879162	75879161	+	RAMPAGE_only	6	6	7	0.621174	2.584963	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75868950	75899577	UBE2Q2|ENST00000567921.1	+	75868950,75873427,75883365,75896994,75899426	75869010,75873568,75883424,75897061,75899577	0.571429
sigmoid_colon_female_adult_51_years	chr20	18794065	18794086	18794085	+	High_confidence	14	14	43	3.815786	4.815459	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
sigmoid_colon_female_adult_51_years	chr10	65570509	65570522	65570519	+	High_confidence	10	11	44	3.904525	4.850570	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.590909
sigmoid_colon_female_adult_51_years	chr1	202582538	202582572	202582571	+	RAMPAGE_only	13	13	25	2.218480	4.136842	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.960000
sigmoid_colon_female_adult_51_years	chr10	63594824	63594847	63594824	+	RAMPAGE_only	3	5	9	0.798653	2.503258	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	1.000000
sigmoid_colon_female_adult_51_years	chr2	55228153	55228165	55228153	-	RAMPAGE_only	3	3	9	0.798653	2.725481	chr2	55228053	55228212	LINE|L2|L2c	+	chr2	55222271	55224398	CLHC1|ENST00000403506.1	-	55222271,55224190	55222493,55224398	0.555556
sigmoid_colon_female_adult_51_years	chr22	37755619	37755658	37755657	+	High_confidence	7	7	14	1.242349	2.985228	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37754881	37758135	STRG.113665.7	+	37754881,37755100,37757612	37754984,37755659,37758135	0.928571
sigmoid_colon_female_adult_51_years	chr4	143470528	143470529	143470528	+	RAMPAGE_only	5	5	8	0.709914	2.750000	chr4	143470450	143470571	DNA|TcMar-Tigger|UCON55	+	chr4	143336829	143474565	GAB1|NM_207123.2	+	143336829,143415476,143433490,143437998,143439801,143440078,143457679,143459384,143460363,143466102,143469030	143337260,143415771,143433716,143438600,143439887,143440382,143457769,143459478,143460487,143466225,143474565	1.000000
sigmoid_colon_female_adult_51_years	chr12	9965312	9965321	9965312	+	RAMPAGE_only	5	5	12	1.064870	3.584963	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.833333
sigmoid_colon_female_adult_51_years	chr17	79658943	79658978	79658947	-	High_confidence	7	7	32	2.839655	4.631616	chr17	79658911	79659280	LTR|ERVL-MaLR|MLT1I	-	chr17	79632167	79658982	STRG.101888.1	-	79632167,79644136,79646195,79658868	79632739,79644242,79646334,79658982	0.656250
sigmoid_colon_female_adult_51_years	chr8	143018394	143018410	143018394	-	High_confidence	4	6	14	1.242349	3.324863	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	142981737	143018390	LY6E-DT|ENST00000517833.1	-	142981737,143018159	142982501,143018390	0.642857
sigmoid_colon_female_adult_51_years	chr8	93496634	93496635	93496634	-	RAMPAGE_only	15	15	15	1.331088	3.006239	chr8	93496587	93496792	DNA|hAT-Blackjack|MER63A	+	chr8	93213309	93420880	LINC00535|ENST00000520096.5	-	93213309,93302924,93340175,93346692,93362519,93420766	93213520,93303034,93340257,93346906,93362578,93420880	0.733333
sigmoid_colon_female_adult_51_years	chr3	177758980	177758981	177758980	+	RAMPAGE_only	7	7	10	0.887392	2.921928	chr3	177758874	177759092	LTR|ERVL-MaLR|MSTA	-	chr3	177441920	177767906	STRG.28005.3	+	177441920,177539394,177629416,177751910,177765737,177766682	177442110,177539493,177629555,177765660,177765833,177767906	1.000000
sigmoid_colon_female_adult_51_years	chr14	50756673	50756693	50756673	-	RAMPAGE_only	3	3	8	0.709914	2.807355	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.875000
sigmoid_colon_female_adult_51_years	chr1	111608260	111608286	111608285	-	High_confidence	7	8	18	1.597306	3.852169	chr1	111607038	111608899	Retroposon|SVA|SVA_D	-	chr1	111599006	111608318	LINC01160|NR_034126.1	-	111599006,111602191,111604368,111604628,111608135	111600095,111602255,111604500,111604702,111608318	0.944444
sigmoid_colon_female_adult_51_years	chr2	217937254	217937255	217937254	-	High_confidence	8	8	8	0.709914	2.500000	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	1.000000
sigmoid_colon_female_adult_51_years	chr1	201496503	201496509	201496508	-	RAMPAGE_only	4	4	11	0.976131	2.594907	chr1	201496505	201496564	LINE|L2|L2a	-	chr1	201495598	201507104	CSRP1|ENST00000481851.1	-	201495598,201507069	201496304,201507104	0.818182
sigmoid_colon_female_adult_51_years	chr12	109179258	109179288	109179279	+	RAMPAGE_only	3	4	16	1.419827	3.272906	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109175976	109246386	STRG.83080.6	+	109175976,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178	109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246386	0.875000
sigmoid_colon_female_adult_51_years	chr19	48868595	48868617	48868613	-	High_confidence	253	293	1386	122.992542	7.129085	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48861642	48868602	STRG.107210.1	-	48861642,48865502,48867536,48868082	48861692,48865610,48867626,48868602	0.990620
sigmoid_colon_female_adult_51_years	chr19	5680203	5680249	5680240	-	High_confidence	2	2	10	0.887392	2.947703	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.900000
sigmoid_colon_female_adult_51_years	chr5	14653390	14653391	14653390	-	High_confidence	36	37	38	3.372090	4.141604	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.868421
sigmoid_colon_female_adult_51_years	chr3	120395857	120395902	120395859	-	RAMPAGE_only	15	23	51	4.525700	4.814103	chr3	120395790	120395849	SINE|MIR|MIR3	-	chr3	120394213	120451071	FSTL1|NM_007085.4	-	120394213,120399882,120402807,120403241,120404852,120409531,120410951,120411853,120415922,120450683,120450896	120396996,120399959,120402918,120403354,120404971,120409662,120410984,120411983,120416027,120450746,120451071	1.000000
sigmoid_colon_female_adult_51_years	chr10	77587847	77587860	77587847	-	RAMPAGE_only	2	2	7	0.621174	2.521641	chr10	77587756	77587808	LINE|L2|L2b	-	chr10	77039122	77637483	KCNMA1|ENST00000638506.1	-	77039122,77039527,77073096,77079480,77084636,77086487,77090399,77108480,77110172,77112366,77120972,77183420,77184822,77251194,77403861,77586316,77587783,77637264	77039316,77039637,77073252,77079550,77084719,77086593,77090510,77108572,77110343,77112442,77121048,77183532,77184916,77251256,77404023,77586458,77587871,77637483	0.571429
sigmoid_colon_female_adult_53_years	chr17	49646312	49646340	49646339	-	High_confidence	3	3	8	0.678710	2.750000	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.750000
sigmoid_colon_female_adult_53_years	chr5	139364676	139364708	139364676	+	RAMPAGE_only	4	5	11	0.933227	2.921928	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.818182
sigmoid_colon_female_adult_53_years	chr16	30354680	30354684	30354680	-	High_confidence	4	6	10	0.848388	2.721928	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	1.000000
sigmoid_colon_female_adult_53_years	chr8	53523862	53523902	53523901	-	High_confidence	5	5	18	1.527099	3.614369	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
sigmoid_colon_female_adult_53_years	chr11	3380960	3380961	3380960	+	High_confidence	25	25	25	2.120970	4.163856	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.760000
sigmoid_colon_female_adult_53_years	chr15	93863033	93863088	93863087	+	High_confidence	4	4	12	1.018066	2.845351	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.583333
sigmoid_colon_female_adult_53_years	chr4	86453306	86453314	86453313	-	High_confidence	2	2	7	0.593872	2.584963	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453325	MAPK10|ENST00000641313.1	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86354644,86453325	0.714286
sigmoid_colon_female_adult_53_years	chr12	53464783	53464832	53464831	+	RAMPAGE_only	3	3	13	1.102905	2.777363	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479614	STRG.69049.15	+	53462513,53465931,53467220,53467804,53471637,53479405	53462567,53465973,53467293,53468832,53471807,53479614	0.769231
sigmoid_colon_female_adult_53_years	chr11	47214443	47214463	47214462	+	High_confidence	5	5	15	1.272582	2.896292	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214464	47216873	DDB2|ENST00000622878.4	+	47214464,47215070,47216335,47216857	47214674,47215263,47216472,47216873	0.933333
sigmoid_colon_female_adult_53_years	chr18	59666163	59666166	59666165	-	High_confidence	6	9	11	0.933227	3.095795	chr18	59665992	59666361	LTR|ERVL-MaLR|THE1B	-	chr18	59448045	59666162	CCBE1|ENST00000589419.1	-	59448045,59454850,59466738,59469472,59480185,59666075	59448103,59454951,59466891,59469607,59480238,59666162	0.545455
sigmoid_colon_female_adult_53_years	chr18	8714136	8714158	8714136	+	RAMPAGE_only	3	3	7	0.593872	2.521641	chr18	8714168	8714357	SINE|MIR|MIRb	+	chr18	8717370	8832777	MTCL1|NM_015210.3	+	8717370,8717903,8718423,8720337,8777832,8783529,8785935,8792997,8796231,8798096,8806892,8812978,8818962,8821466,8824698,8828907,8831606	8717426,8717962,8718648,8720496,8777892,8784843,8786091,8793120,8796462,8798291,8807060,8813233,8819259,8821498,8826232,8828964,8832777	1.000000
sigmoid_colon_female_adult_53_years	chr20	37297381	37297388	37297387	+	High_confidence	9	9	17	1.442260	3.381580	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
sigmoid_colon_female_adult_53_years	chr11	13419715	13419740	13419717	-	RAMPAGE_only	3	5	11	0.933227	2.663533	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.818182
sigmoid_colon_female_adult_53_years	chrX	16712878	16712923	16712878	-	High_confidence	6	7	32	2.714842	4.051109	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	1.000000
sigmoid_colon_female_adult_53_years	chr18	7946878	7946898	7946897	+	High_confidence	12	12	37	3.139036	4.152447	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.945946
sigmoid_colon_female_adult_53_years	chr14	81427414	81427445	81427444	-	High_confidence	5	5	22	1.866454	4.368523	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.909091
sigmoid_colon_female_adult_53_years	chr7	11193348	11193374	11193348	+	High_confidence	4	4	13	1.102905	2.873141	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.769231
sigmoid_colon_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	91	97	122	10.350335	5.759032	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158124603	158173046	STRG.30011.3	-	158124603,158155610,158170465,158172867	158131012,158155825,158171599,158173046	0.959016
sigmoid_colon_female_adult_53_years	chr8	80485592	80485619	80485592	+	High_confidence	11	11	19	1.611937	3.366091	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.894737
sigmoid_colon_female_adult_53_years	chr7	99410112	99410147	99410146	+	High_confidence	8	8	21	1.781615	3.653757	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.857143
sigmoid_colon_female_adult_53_years	chr6	169654701	169654734	169654701	-	High_confidence	4	4	22	1.866454	3.203702	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169654398	169654727	STRG.43454.1	-	169654398	169654727	0.636364
sigmoid_colon_female_adult_53_years	chr6	28354143	28354206	28354205	-	High_confidence	20	20	66	5.599362	5.145144	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28326774	28354204	STRG.38246.2	-	28326774,28327382,28329302,28336789,28353861	28326854,28327533,28329778,28336943,28354204	0.803030
sigmoid_colon_female_adult_53_years	chr8	11795569	11795570	11795569	+	High_confidence	43	45	45	3.817747	3.734218	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	1.000000
sigmoid_colon_female_adult_53_years	chr5	147382883	147382895	147382883	+	High_confidence	14	14	42	3.563230	3.667236	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.857143
sigmoid_colon_female_adult_53_years	chr22	39021125	39021156	39021125	+	High_confidence	2	2	9	0.763549	2.947703	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.888889
sigmoid_colon_female_adult_53_years	chr17	15475732	15475733	15475732	-	High_confidence	7	7	11	0.933227	2.913977	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15437858	15475728	CDRT4|ENST00000520956.2	-	15437858,15475600	15438200,15475728	0.818182
sigmoid_colon_female_adult_53_years	chr1	202551736	202551798	202551736	+	RAMPAGE_only	15	17	108	9.162592	5.813695	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.592593
sigmoid_colon_female_adult_53_years	chr3	135965673	135965749	135965748	+	High_confidence	23	23	201	17.052601	6.016563	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965695	136008671	STRG.22557.4	+	135965695,136001058,136007793	135965849,136003493,136008671	0.970149
sigmoid_colon_female_adult_53_years	chr4	185620090	185620127	185620109	-	RAMPAGE_only	4	4	19	1.611937	3.302723	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.736842
sigmoid_colon_female_adult_53_years	chr6	30493546	30493801	30493639	+	RAMPAGE_only	12	12	167	14.168082	5.667008	chr6	30493513	30493719	LTR|ERVL-MaLR|MSTC	+	chr6	30489466	30494205	HLA-E|ENST00000376630.4	+	30489466,30489725,30490239,30491136,30491536,30492403,30492540,30492748	30489595,30489995,30490515,30491412,30491653,30492436,30492583,30494205	0.982036
sigmoid_colon_female_adult_53_years	chr1	89272867	89272883	89272882	-	High_confidence	8	8	23	1.951293	3.516028	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.956522
sigmoid_colon_female_adult_53_years	chr19	9140393	9140428	9140393	+	High_confidence	25	25	88	7.465815	5.438133	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.795455
sigmoid_colon_female_adult_53_years	chr3	134485387	134485471	134485462	-	High_confidence	6	6	43	3.648069	4.671730	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.534884
sigmoid_colon_female_adult_53_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	7	7	7	0.593872	2.807355	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888512	77933384	NEXN|ENST00000401035.7	+	77888512,77916054,77917959,77918124,77925187,77926413,77926715,77929315,77933281	77888759,77916133,77918038,77918273,77925229,77926611,77926892,77929504,77933384	1.000000
sigmoid_colon_female_adult_53_years	chr2	229586809	229586927	229586883	-	High_confidence	6	7	72	6.108394	4.959478	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229357628	229587145	STRG.16953.1	-	229357628,229366872,229388264,229407231,229418107,229447315,229477139,229512782,229546946,229585857,229586693	229358651,229367119,229388396,229407345,229418230,229447540,229477253,229512936,229547092,229586024,229587145	0.916667
sigmoid_colon_female_adult_53_years	chr12	8668603	8668621	8668620	+	High_confidence	15	15	45	3.817747	4.350069	chr12	8668440	8668935	LTR|ERVL-MaLR|MLT1F2	+	chr12	8668620	8750013	STRG.67021.9	+	8668620,8713810,8749861	8668831,8714041,8750013	0.888889
sigmoid_colon_female_adult_53_years	chr21	34512218	34512219	34512218	-	High_confidence	5	6	8	0.678710	2.521641	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.750000
sigmoid_colon_female_adult_53_years	chr5	138170346	138170347	138170346	-	RAMPAGE_only	9	10	12	1.018066	2.594907	chr5	138170278	138170360	DNA|hAT-Ac|OldhAT1	+	chr5	138156881	138177667	BRD8|ENST00000441656.5	-	138156881,138160068,138160890,138161795,138162053,138163129,138164086,138164319,138164713,138165827,138167933,138168469,138169221,138170344,138170831,138171037,138171360,138172064,138177570	138157267,138160173,138161068,138161864,138162146,138163344,138164133,138164413,138165166,138166108,138168078,138168688,138169349,138170409,138170912,138171160,138171410,138172134,138177667	0.916667
sigmoid_colon_female_adult_53_years	chr1	242001502	242001525	242001524	-	RAMPAGE_only	5	5	13	1.102905	3.188722	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	241999083	MAP1LC3C|NM_001004343.2	-	241995489,241998513,241998775,241998950	241996385,241998620,241998831,241999083	0.769231
sigmoid_colon_female_adult_53_years	chr15	62894582	62894597	62894596	+	RAMPAGE_only	5	5	11	0.933227	2.845351	chr15	62894534	62894826	SINE|Alu|AluSx3	+	chr15	62895811	62899543	AC103740.2|ENST00000557900.1	+	62895811,62898650	62896143,62899543	0.909091
sigmoid_colon_female_adult_53_years	chr13	110057309	110057346	110057309	-	High_confidence	5	6	12	1.018066	3.084963	chr13	110056667	110057319	LTR|ERV1|LTR58	+	chr13	110036196	110057286	AL355974.2|ENST00000617298.1	-	110036196,110057125	110036971,110057286	1.000000
sigmoid_colon_female_adult_53_years	chr11	114295326	114295337	114295336	+	High_confidence	4	5	10	0.848388	2.721928	chr11	114294850	114295386	LTR|ERV1|LTR35A	-	chr11	114295812	114312516	NNMT|NM_006169.2	+	114295812,114297950,114312044	114296710,114298158,114312516	0.700000
sigmoid_colon_female_adult_53_years	chr11	123060124	123060256	123060124	-	High_confidence	12	12	99	8.399042	4.242549	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	1.000000
sigmoid_colon_female_adult_53_years	chr8	116648824	116648889	116648847	-	RAMPAGE_only	9	9	28	2.375487	3.931209	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.928571
sigmoid_colon_female_adult_53_years	chr7	102822458	102822461	102822458	-	RAMPAGE_only	3	3	8	0.678710	2.807355	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.500000
sigmoid_colon_female_adult_53_years	chr1	174874418	174874439	174874418	+	High_confidence	7	7	15	1.272582	2.950212	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.666667
sigmoid_colon_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	314	343	927	78.645579	5.956002	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.974110
sigmoid_colon_female_adult_53_years	chr18	9588114	9588218	9588114	-	RAMPAGE_only	4	4	26	2.205809	3.844107	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9561982	9595061	STRG.87393.4	-	9561982,9562921,9563377,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9593767,9595017	9562075,9563046,9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9593874,9595061	1.000000
sigmoid_colon_female_adult_53_years	chr11	64226142	64226180	64226142	-	High_confidence	62	63	312	26.469709	6.797559	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64224202	64226148	TRPT1|ENST00000545812.1	-	64224202,64224284,64224542,64224794,64225498,64225785,64226049	64224210,64224341,64224717,64224970,64225580,64225869,64226148	0.516026
sigmoid_colon_female_adult_53_years	chrX	11351617	11351637	11351636	-	RAMPAGE_only	11	11	27	2.290648	4.106377	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.851852
sigmoid_colon_female_adult_53_years	chr12	16353884	16353885	16353884	+	High_confidence	73	76	83	7.041621	4.182096	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.734940
sigmoid_colon_female_adult_53_years	chr12	7502492	7502539	7502538	-	High_confidence	6	6	30	2.545164	4.306891	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	1.000000
sigmoid_colon_female_adult_53_years	chr9	92536625	92536650	92536649	-	High_confidence	5	5	13	1.102905	2.661226	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	1.000000
sigmoid_colon_female_adult_53_years	chr2	3536845	3536879	3536845	-	High_confidence	11	11	58	4.920651	5.137538	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3533223	3536869	AC108488.1|ENST00000438482.1	-	3533223,3534112,3536723	3533848,3534255,3536869	0.551724
sigmoid_colon_female_adult_53_years	chr1	19344388	19344429	19344388	-	RAMPAGE_only	6	6	22	1.866454	3.327340	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.954545
sigmoid_colon_female_adult_53_years	chr1	25820177	25820216	25820202	+	High_confidence	4	5	17	1.442260	4.087463	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.882353
sigmoid_colon_female_adult_53_years	chr20	45407886	45407894	45407886	-	High_confidence	6	8	14	1.187743	2.661226	chr20	45407777	45407881	SINE|MIR|MIRb	-	chr20	45375476	45407889	TP53TG5|ENST00000494455.5	-	45375476,45377211,45377538,45404252,45405716,45407748	45375552,45377342,45377613,45404307,45405820,45407889	0.500000
sigmoid_colon_female_adult_53_years	chr9	20658342	20658349	20658348	+	High_confidence	11	14	27	2.290648	3.406152	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.814815
sigmoid_colon_female_adult_53_years	chr11	71999607	71999609	71999608	+	High_confidence	5	8	12	1.018066	2.845351	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.916667
sigmoid_colon_female_adult_53_years	chr19	35115816	35115845	35115822	+	High_confidence	14	14	50	4.241941	5.002465	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.860000
sigmoid_colon_female_adult_53_years	chr3	139344537	139344565	139344547	+	High_confidence	5	5	22	1.866454	3.538311	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	1.000000
sigmoid_colon_female_adult_53_years	chr2	177837090	177837104	177837090	+	High_confidence	3	3	7	0.593872	2.807355	chr2	177837020	177837462	LTR|ERV1|HUERS-P3b-int	+	chr2	177836593	177841732	STRG.14938.1	+	177836593,177838782,177840204,177841219	177837127,177838870,177840399,177841732	1.000000
sigmoid_colon_female_adult_53_years	chr1	212792469	212792473	212792469	-	High_confidence	7	9	17	1.442260	3.219528	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	1.000000
sigmoid_colon_female_adult_53_years	chr12	50924078	50924079	50924078	+	High_confidence	6	7	7	0.593872	2.521641	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	1.000000
sigmoid_colon_female_adult_53_years	chr17	2975657	2975661	2975657	+	RAMPAGE_only	3	4	11	0.933227	2.663533	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.909091
sigmoid_colon_female_adult_53_years	chr22	50757120	50757147	50757146	+	High_confidence	5	5	12	1.018066	2.918296	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.500000
sigmoid_colon_female_adult_53_years	chr19	571725	571754	571752	-	High_confidence	7	14	23	1.951293	3.377278	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	1.000000
sigmoid_colon_female_adult_53_years	chr1	242001562	242001589	242001562	-	RAMPAGE_only	4	4	16	1.357421	3.077820	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	241999083	MAP1LC3C|NM_001004343.2	-	241995489,241998513,241998775,241998950	241996385,241998620,241998831,241999083	0.937500
sigmoid_colon_female_adult_53_years	chr1	89127431	89127432	89127431	-	High_confidence	134	136	141	11.962273	5.231926	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89111825	89127410	STRG.3667.10	-	89111825,89114015,89116991,89117576,89120178,89121142,89121776,89125862,89127054	89112684,89114296,89117234,89117773,89120288,89121270,89121983,89126062,89127410	0.851064
sigmoid_colon_female_adult_53_years	chr2	96303177	96303280	96303177	-	RAMPAGE_only	9	9	45	3.817747	4.719522	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
sigmoid_colon_female_adult_53_years	chr5	14653390	14653391	14653390	-	High_confidence	71	71	72	6.108394	4.370821	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.986111
sigmoid_colon_female_adult_53_years	chr14	51599919	51600012	51599923	-	High_confidence	51	53	326	27.657453	5.818125	chr14	51599913	51599958	SINE|MIR|MIR3	+	chr14	51546628	51599920	FRMD6-AS2|ENST00000557625.1	-	51546628,51547706,51584165,51599826	51546820,51547883,51584283,51599920	0.865031
sigmoid_colon_female_adult_53_years	chr6	26474340	26474346	26474345	+	RAMPAGE_only	11	11	20	1.696776	3.821928	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.950000
sigmoid_colon_female_adult_53_years	chr5	149409468	149409540	149409493	+	RAMPAGE_only	4	4	18	1.527099	3.572431	chr5	149409401	149409639	SINE|MIR|MIRb	-	chr5	149407244	149412768	CARMN|ENST00000614517.1	+	149407244	149412768	1.000000
sigmoid_colon_female_adult_53_years	chr3	3782611	3782664	3782625	-	RAMPAGE_only	3	3	9	0.763549	2.725481	chr3	3782417	3783018	LTR|ERVL|MLT2A2	-	chr3	3777680	3795532	STRG.17748.3	-	3777680,3779240,3781015,3782502,3788913,3795295	3777803,3779322,3781179,3782701,3789074,3795532	0.888889
sigmoid_colon_female_adult_53_years	chr16	81181319	81181331	81181330	-	High_confidence	15	15	24	2.036131	3.970176	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.916667
sigmoid_colon_female_adult_53_years	chr5	150125450	150125484	150125450	-	RAMPAGE_only	7	7	18	1.527099	3.503258	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	1.000000
sigmoid_colon_female_adult_53_years	chr19	36850355	36850396	36850395	+	High_confidence	3	3	12	1.018066	3.418296	chr19	36850362	36850429	LTR|ERV1|MER67D	-	chr19	36850360	36879572	ZNF345|ENST00000589046.1	+	36850360,36851727,36876784	36850515,36851904,36879572	0.666667
sigmoid_colon_female_adult_53_years	chr20	25296915	25296939	25296938	+	RAMPAGE_only	2	2	7	0.593872	2.584963	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	0.857143
sigmoid_colon_female_adult_53_years	chr9	68975832	68975846	68975842	-	High_confidence	18	18	52	4.411618	4.817334	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.519231
sigmoid_colon_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	78	79	79	6.702266	5.160420	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.810127
sigmoid_colon_female_adult_53_years	chr21	28048446	28048447	28048446	+	High_confidence	118	119	130	11.029046	4.449819	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.915385
sigmoid_colon_female_adult_53_years	chr8	16186271	16186277	16186271	-	High_confidence	5	6	11	0.933227	2.921928	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.909091
sigmoid_colon_female_adult_53_years	chr17	47067498	47067518	47067498	-	High_confidence	183	197	641	54.381679	5.765417	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.937598
sigmoid_colon_female_adult_53_years	chr1	54413473	54413493	54413492	-	High_confidence	7	7	20	1.696776	3.784184	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54412707	54413466	SSBP3|ENST00000448572.1	-	54412707,54413080,54413355	54412877,54413253,54413466	0.500000
sigmoid_colon_female_adult_53_years	chrX	5726116	5726148	5726116	-	RAMPAGE_only	18	21	36	3.054197	4.207436	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719217	5719872	STRG.96809.1	-	5719217	5719872	0.777778
sigmoid_colon_female_adult_53_years	chr11	90251204	90251205	90251204	+	High_confidence	6	6	6	0.509033	2.584963	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.500000
sigmoid_colon_female_adult_53_years	chr15	80059918	80059933	80059918	+	High_confidence	116	129	237	20.106798	5.026036	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.970464
sigmoid_colon_female_adult_53_years	chr9	130268693	130268700	130268693	+	RAMPAGE_only	3	4	10	0.848388	2.921928	chr9	130268629	130268697	LINE|L2|L2b	-	chr9	130265881	130434123	HMCN2|ENST00000624552.3	+	130265881,130284602,130285157,130286187,130294854,130295665,130296673,130299024,130302856,130303486,130304729,130306128,130306810,130307452,130309911,130319494,130320355,130320775,130321786,130325594,130325810,130327309,130337893,130341110,130342349,130347165,130348544,130348983,130349536,130351422,130352926,130354762,130355745,130356087,130357833,130358389,130359318,130360427,130362007,130362866,130364713,130365630,130365875,130368275,130369569,130370963,130372293,130373037,130374501,130375562,130375875,130376515,130377648,130379248,130382183,130382678,130383503,130384372,130384684,130385559,130386442,130388408,130390976,130391203,130391449,130391934,130393211,130393741,130394384,130395026,130395210,130395923,130396168,130397527,130398607,130399510,130400782,130402788,130403193,130403740,130404868,130405954,130407570,130408742,130410570,130418771,130422576,130424775,130425008,130425686,130427312,130427496,130428357,130429556,130430283,130431366,130432428,130433347	130266137,130284673,130285316,130286310,130295026,130295772,130296794,130299288,130303001,130303608,130305002,130306270,130306938,130307566,130310061,130319695,130320451,130320903,130321931,130325707,130325970,130327475,130338021,130341365,130342436,130347360,130348675,130349131,130349663,130351577,130353205,130355044,130355854,130356257,130357988,130358486,130359414,130360604,130362165,130362990,130364889,130365727,130365995,130368437,130369851,130371131,130372407,130373124,130374693,130375736,130375989,130376658,130377799,130379467,130382297,130382866,130383600,130384534,130384798,130385762,130386524,130388540,130391120,130391363,130391574,130392118,130393309,130394008,130394575,130395108,130395347,130396065,130396313,130397655,130398707,130399632,130400947,130402896,130403328,130403875,130405059,130406168,130407705,130408933,130410652,130419041,130422726,130424913,130425130,130425924,130427375,130427619,130428489,130429685,130430604,130431486,130432555,130434123	1.000000
sigmoid_colon_female_adult_53_years	chr12	46243267	46243292	46243291	-	RAMPAGE_only	4	4	12	1.018066	2.594907	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.916667
sigmoid_colon_female_adult_53_years	chr12	15001802	15001818	15001810	+	High_confidence	6	6	22	1.866454	3.606937	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.909091
sigmoid_colon_female_adult_53_years	chr7	134432378	134432436	134432378	-	High_confidence	7	10	29	2.460326	4.060262	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.655172
sigmoid_colon_female_adult_53_years	chr8	99892036	99892057	99892056	-	RAMPAGE_only	310	310	492	41.740696	4.816043	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.989837
sigmoid_colon_female_adult_53_years	chr16	27333283	27333288	27333283	+	RAMPAGE_only	7	9	16	1.357421	2.602217	chr16	27333168	27333399	LINE|CR1|L3	-	chr16	27332253	27346618	STRG.82502.9	+	27332253,27340185,27342120,27344868,27346466	27333641,27340273,27342259,27345020,27346618	0.750000
sigmoid_colon_female_adult_53_years	chr6	30493021	30493108	30493021	+	RAMPAGE_only	10	10	33	2.799681	4.354852	chr6	30493011	30493324	SINE|Alu|AluSc8	+	chr6	30489466	30494205	HLA-E|ENST00000376630.4	+	30489466,30489725,30490239,30491136,30491536,30492403,30492540,30492748	30489595,30489995,30490515,30491412,30491653,30492436,30492583,30494205	1.000000
sigmoid_colon_female_adult_53_years	chr20	50172503	50172545	50172544	+	High_confidence	8	8	14	1.187743	3.085055	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172549	50173370	LINC01273|ENST00000427333.5	+	50172549,50172922,50173201	50172788,50173017,50173370	0.785714
sigmoid_colon_female_adult_53_years	chr5	149409571	149409648	149409571	+	RAMPAGE_only	7	9	42	3.563230	4.141619	chr5	149409401	149409639	SINE|MIR|MIRb	-	chr5	149407244	149412768	CARMN|ENST00000614517.1	+	149407244	149412768	1.000000
sigmoid_colon_female_adult_53_years	chr15	52100524	52100538	52100536	-	High_confidence	3	5	11	0.933227	2.913977	chr15	52100279	52100861	LTR|ERVL|MER73	-	chr15	52056674	52100523	AC023906.5|ENST00000558607.1	-	52056674,52100469	52057255,52100523	1.000000
sigmoid_colon_female_adult_53_years	chr2	36513735	36513757	36513735	+	High_confidence	4	5	15	1.272582	2.923231	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.800000
sigmoid_colon_female_adult_53_years	chr14	91462124	91462182	91462181	-	High_confidence	4	5	14	1.187743	2.950212	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	1.000000
sigmoid_colon_female_adult_53_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	21	21	23	1.951293	3.558519	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54243236	54258098	STRG.2285.7	-	54243236,54251615,54251793,54257126,54258068	54243299,54251692,54251860,54257186,54258098	0.608696
sigmoid_colon_female_adult_53_years	chr16	74485831	74485869	74485831	-	RAMPAGE_only	5	5	19	1.611937	3.221097	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	1.000000
sigmoid_colon_female_adult_53_years	chr19	11539705	11539731	11539705	+	High_confidence	7	7	17	1.442260	3.572469	chr19	11539660	11539789	SINE|MIR|MIRb	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	0.882353
sigmoid_colon_female_adult_53_years	chr16	15798662	15798675	15798664	-	RAMPAGE_only	76	107	233	19.767443	6.114570	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.896996
sigmoid_colon_female_adult_53_years	chr16	2757801	2757918	2757801	+	High_confidence	5	5	40	3.393552	4.580023	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.950000
sigmoid_colon_female_adult_53_years	chr7	107580245	107580267	107580245	+	High_confidence	414	420	2158	183.082157	6.491333	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.969416
sigmoid_colon_female_adult_53_years	chr17	79658943	79658980	79658979	-	High_confidence	6	7	27	2.290648	4.208410	chr17	79658911	79659280	LTR|ERVL-MaLR|MLT1I	-	chr17	79632022	79658957	STRG.86954.3	-	79632022,79637569,79644136,79646195,79658868	79632739,79637688,79644242,79646334,79658957	0.629630
sigmoid_colon_female_adult_53_years	chr19	35164213	35164236	35164235	+	High_confidence	4	6	11	0.933227	2.721928	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	0.909091
sigmoid_colon_female_adult_53_years	chr14	32402135	32402136	32402135	+	RAMPAGE_only	8	8	8	0.678710	2.500000	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32428387	32735725	STRG.74790.2	+	32428387,32433459,32535553,32545229,32577119,32599409,32600628,32678310,32695989,32732453,32735657	32428565,32433817,32535805,32546999,32577242,32599506,32600792,32678459,32696110,32732600,32735725	1.000000
sigmoid_colon_female_adult_53_years	chr9	20658589	20658608	20658589	+	High_confidence	2	2	6	0.509033	2.584963	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.833333
sigmoid_colon_female_adult_53_years	chr15	65244454	65244455	65244454	-	High_confidence	24	29	31	2.630003	4.256565	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65231844	65244448	STRG.79883.1	-	65231844,65234253,65244370	65231888,65234823,65244448	0.935484
sigmoid_colon_female_adult_53_years	chrX	5726324	5726325	5726324	-	High_confidence	52	62	71	6.023556	4.608633	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.859155
sigmoid_colon_female_adult_53_years	chr20	44696111	44696112	44696111	-	High_confidence	14	16	16	1.357421	3.500000	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.625000
sigmoid_colon_female_adult_53_years	chr15	98017769	98017790	98017769	-	High_confidence	31	33	118	10.010980	5.927795	chr15	98016264	98017842	LINE|L2|L2a	+	chr15	98015643	98017831	STRG.81328.2	-	98015643	98017831	0.779661
sigmoid_colon_female_adult_53_years	chr1	147172962	147172976	147172975	+	High_confidence	9	12	17	1.442260	3.327820	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.941176
sigmoid_colon_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	604	713	1265	107.321097	5.112099	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.990514
sigmoid_colon_female_adult_53_years	chr3	41843759	41843760	41843759	-	High_confidence	25	25	25	2.120970	3.653661	chr3	41843343	41844729	LTR|ERV1|LTR12C	-	chr3	41753869	41843982	STRG.19338.3	-	41753869,41789660,41800131,41819422,41835863,41843379	41754488,41789843,41800293,41819506,41835971,41843982	0.880000
sigmoid_colon_female_adult_53_years	chr8	53523963	53523966	53523963	-	High_confidence	6	6	11	0.933227	3.095795	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
sigmoid_colon_female_adult_53_years	chr4	73144770	73144828	73144770	-	RAMPAGE_only	5	5	10	0.848388	2.721928	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	1.000000
sigmoid_colon_female_adult_53_years	chr11	70077928	70077961	70077960	+	High_confidence	4	4	9	0.763549	2.503258	chr11	70077921	70078008	LINE|L2|L2c	-	chr11	70078021	70189252	STRG.63724.1	+	70078021,70078541,70087751,70103065,70103998,70105733,70108352,70111706,70116457,70124349,70126060,70131918,70149709,70152449,70153056,70155910,70156946,70161160,70161621,70163282,70165469,70167241,70170886,70180003,70182501,70185589,70187737	70078090,70078714,70088084,70103164,70104150,70105788,70108404,70111762,70116499,70124414,70126195,70132079,70149792,70152461,70153128,70155988,70157021,70161362,70161733,70163340,70165570,70167387,70171039,70180056,70182686,70185695,70189252	1.000000
sigmoid_colon_female_adult_53_years	chr12	79873266	79873267	79873266	-	High_confidence	5	5	8	0.678710	2.750000	chr12	79873243	79873519	DNA|hAT-Charlie|Charlie1a	+	chr12	79828370	79872872	PPP1R12A|ENST00000548318.1	-	79828370,79832331,79845301,79848787,79872807	79828464,79832491,79845420,79848931,79872872	1.000000
sigmoid_colon_female_adult_53_years	chr9	87874163	87874184	87874183	+	RAMPAGE_only	6	6	26	2.205809	3.642371	chr9	87874022	87874740	LTR|ERV1|LTR76	+	chr9	87876082	87878801	STRG.55186.1	+	87876082,87878561	87876293,87878801	0.923077
sigmoid_colon_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	26	26	26	2.205809	3.382568	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	1.000000
sigmoid_colon_female_adult_53_years	chr12	103777062	103777504	103777288	-	RAMPAGE_only	11	13	248	21.040025	4.116938	chr12	103777216	103777295	DNA|TcMar-Tigger|Tigger19b	+	chr12	103772309	103793472	STRG.71232.6	-	103772309,103780299,103785334,103788837,103793163,103793409	103778081,103780364,103787527,103788919,103793265,103793472	0.995968
sigmoid_colon_female_adult_53_years	chr22	36471184	36471212	36471211	+	High_confidence	14	14	39	3.308714	4.442845	chr22	36471205	36471377	LTR|ERVL|LTR86A2	+	chr22	36472002	36472639	STRG.96142.1	+	36472002	36472639	0.769231
sigmoid_colon_female_adult_53_years	chr22	50785210	50785243	50785224	+	High_confidence	2	2	12	1.018066	3.027169	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50784374	50799123	STRG.96681.9	+	50784374,50785172,50798654	50784424,50785293,50799123	0.750000
sigmoid_colon_female_adult_53_years	chr10	72355126	72355146	72355126	-	High_confidence	5	5	16	1.357421	3.272906	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.937500
sigmoid_colon_female_adult_53_years	chr4	11336755	11336783	11336762	+	RAMPAGE_only	7	7	29	2.460326	3.190062	chr4	11336585	11336947	LTR|ERVL-MaLR|MLT1O	+	chr4	11347193	11347651	STRG.25525.1	+	11347193	11347651	0.724138
sigmoid_colon_female_adult_53_years	chr14	68167231	68167264	68167231	-	RAMPAGE_only	3	3	9	0.763549	2.947703	chr14	68166677	68167265	LINE|L2|L2	+	chr14	68125003	68130196	AL133370.1|ENST00000554679.1	-	68125003,68130065	68125409,68130196	0.777778
sigmoid_colon_female_adult_53_years	chr6	2990742	2990750	2990748	-	RAMPAGE_only	4	7	12	1.018066	2.855389	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	1.000000
sigmoid_colon_female_adult_53_years	chr7	158740224	158740281	158740280	-	RAMPAGE_only	12	13	43	3.648069	4.815459	chr7	158740209	158740388	LTR|ERV1|MER49	+	chr7	158733612	158744217	ESYT2|ENST00000435514.3	-	158733612,158734421,158735502,158737047,158739022,158741522,158743528	158734252,158734471,158735608,158737179,158739121,158741896,158744217	0.581395
sigmoid_colon_female_adult_53_years	chr17	59620043	59620044	59620043	+	High_confidence	12	14	17	1.442260	3.499228	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	1.000000
sigmoid_colon_female_adult_53_years	chr3	180870516	180870522	180870516	-	High_confidence	7	7	19	1.611937	3.366091	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180780909	180870399	STRG.24540.1	-	180780909,180847506,180870046	180782124,180847624,180870399	1.000000
sigmoid_colon_female_adult_53_years	chr1	162781230	162781295	162781294	+	RAMPAGE_only	5	5	19	1.611937	3.419382	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.947368
sigmoid_colon_female_adult_53_years	chr3	45034833	45034856	45034840	+	High_confidence	6	7	20	1.696776	3.646439	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45034840	45036068	STRG.19510.2	+	45034840,45035523	45034901,45036068	1.000000
sigmoid_colon_female_adult_53_years	chr5	151157966	151157983	151157966	-	High_confidence	2	2	7	0.593872	2.584963	chr5	151157893	151158048	SINE|MIR|MIR3	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.857143
sigmoid_colon_female_adult_53_years	chr21	36005313	36005320	36005319	+	High_confidence	27	28	62	5.260006	4.696570	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.967742
sigmoid_colon_female_adult_53_years	chr7	154928503	154928504	154928503	+	High_confidence	7	7	8	0.678710	2.521641	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.875000
sigmoid_colon_female_adult_53_years	chr1	153967486	153967512	153967486	+	High_confidence	15	15	34	2.884520	3.774840	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.941176
sigmoid_colon_female_adult_53_years	chr9	39810033	39810034	39810033	-	High_confidence	9	9	10	0.848388	2.725481	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.800000
sigmoid_colon_female_adult_53_years	chr1	19980361	19980362	19980361	-	High_confidence	14	19	19	1.611937	3.826875	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	1.000000
sigmoid_colon_female_adult_53_years	chr11	58578102	58578133	58578123	-	High_confidence	11	14	58	4.920651	4.929114	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58547068	58578117	STRG.63170.2	-	58547068,58549972,58550784,58551064,58554840,58564154,58570555,58576733	58549867,58550146,58550880,58551232,58554940,58564201,58570713,58578117	0.948276
sigmoid_colon_female_adult_53_years	chr17	77390290	77390295	77390294	+	RAMPAGE_only	10	11	21	1.781615	2.815202	chr17	77390212	77390366	SINE|Alu|AluYc	+	chr17	77380122	77402483	SEPT9|ENST00000589140.1	+	77380122,77402058	77380249,77402483	1.000000
sigmoid_colon_female_adult_53_years	chr19	5680220	5680252	5680240	-	High_confidence	10	10	41	3.478391	4.205862	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
sigmoid_colon_female_adult_53_years	chr16	30445873	30445875	30445873	-	High_confidence	38	56	79	6.702266	5.177510	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.974684
sigmoid_colon_female_adult_53_years	chr1	1655434	1655475	1655474	-	RAMPAGE_only	3	4	11	0.933227	2.646439	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.545455
sigmoid_colon_female_adult_53_years	chr10	89888929	89888962	89888929	+	RAMPAGE_only	3	3	12	1.018066	2.732159	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.666667
sigmoid_colon_female_adult_53_years	chr7	6590246	6590252	6590251	+	High_confidence	8	15	26	2.205809	3.333661	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.769231
sigmoid_colon_female_adult_53_years	chr6	79631273	79631329	79631328	+	High_confidence	102	112	412	34.953591	6.450087	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.985437
sigmoid_colon_female_adult_53_years	chr17	4143196	4143215	4143199	+	High_confidence	48	48	105	8.908075	5.278195	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.990476
sigmoid_colon_female_adult_53_years	chr15	98016496	98016521	98016496	-	RAMPAGE_only	5	5	18	1.527099	2.698660	chr15	98016264	98017842	LINE|L2|L2a	+	chr15	97981159	97996538	STRG.81328.1	-	97981159,97995325	97990590,97996538	0.888889
sigmoid_colon_female_adult_53_years	chr12	91179462	91179549	91179462	-	High_confidence	2848	2928	12565	1065.999675	7.439073	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.581297
sigmoid_colon_female_adult_53_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	9	9	9	0.763549	2.947703	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
sigmoid_colon_female_adult_53_years	chr3	33864056	33864091	33864090	+	RAMPAGE_only	4	4	13	1.102905	3.084963	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.923077
sigmoid_colon_female_adult_53_years	chr4	86453184	86453232	86453202	-	High_confidence	20	23	86	7.296138	4.483366	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.848837
sigmoid_colon_female_adult_53_years	chr2	11345436	11345437	11345436	-	High_confidence	5	5	8	0.678710	2.521641	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11179758	11345407	ROCK2|NM_001321643.1	-	11179758,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345407	0.625000
sigmoid_colon_female_adult_53_years	chr6	28354022	28354062	28354054	-	High_confidence	8	8	31	2.630003	3.974890	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324736	28354195	ZSCAN31|ENST00000396838.6	-	28324736,28327382,28329302,28336789,28337755,28341745,28353861,28354130	28326854,28327533,28329714,28336943,28337893,28341792,28353952,28354195	0.612903
sigmoid_colon_female_adult_53_years	chr14	68882879	68883022	68882879	-	High_confidence	7	9	75	6.362911	4.877976	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.946667
sigmoid_colon_female_adult_53_years	chr1	183590895	183590911	183590910	-	High_confidence	5	5	12	1.018066	2.751629	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.833333
sigmoid_colon_female_adult_53_years	chr7	84510121	84510122	84510121	+	High_confidence	10	10	13	1.102905	2.688722	chr7	84509920	84510465	LTR|ERVL|MLT2A2	+	chr7	84510043	84510440	STRG.46072.1	+	84510043	84510440	0.692308
sigmoid_colon_female_adult_53_years	chr20	18794077	18794086	18794085	+	High_confidence	23	23	67	5.684200	4.083506	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
sigmoid_colon_female_adult_53_years	chr7	80369531	80369569	80369531	+	High_confidence	8	8	26	2.205809	4.023465	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.692308
sigmoid_colon_female_adult_53_years	chrX	48683361	48683363	48683362	+	High_confidence	20	32	32	2.714842	4.015320	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
sigmoid_colon_female_adult_53_years	chr3	15738511	15738512	15738511	+	High_confidence	587	628	632	53.618129	4.634901	chr3	15738158	15739435	LTR|ERVK|MER11B	-	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.992089
sigmoid_colon_female_adult_53_years	chr2	177837116	177837117	177837116	-	RAMPAGE_only	9	9	13	1.102905	3.334679	chr2	177837020	177837462	LTR|ERV1|HUERS-P3b-int	+	chr2	177629245	177888738	PDE11A|ENST00000389683.7	-	177629245,177663865,177669492,177675454,177680825,177697331,177701120,177711768,177727657,177728025,177769322,177816828,177817857,177820219,177840250,177875858,177888618	177629562,177663949,177669567,177675518,177680903,177697432,177701211,177711878,177727765,177728172,177769373,177816921,177817925,177820295,177840383,177875923,177888738	0.923077
sigmoid_colon_female_adult_53_years	chr7	11194708	11194727	11194708	+	High_confidence	6	6	18	1.527099	2.660130	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11194705	11244479	AC004160.1|ENST00000627042.2	+	11194705,11197309,11240536,11244257	11194784,11197444,11240731,11244479	0.833333
sigmoid_colon_female_adult_53_years	chr3	188153228	188153262	188153261	+	High_confidence	4	4	18	1.527099	3.281036	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.722222
sigmoid_colon_female_adult_53_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	12	12	12	1.018066	3.084963	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
sigmoid_colon_female_adult_53_years	chrX	5726239	5726274	5726239	-	High_confidence	7	7	22	1.866454	3.463281	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.909091
sigmoid_colon_female_adult_53_years	chr10	45000453	45000515	45000503	+	High_confidence	19	22	73	6.193233	5.188964	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.986301
sigmoid_colon_female_adult_53_years	chr3	164450928	164450929	164450928	+	High_confidence	7	10	10	0.848388	3.121928	chr3	164449656	164452200	LINE|L1|L1PA15	-	chr3	164451313	164621802	STRG.23676.1	+	164451313,164608991,164619324	164451535,164609068,164621802	0.600000
sigmoid_colon_female_adult_53_years	chr5	150118767	150118814	150118767	-	RAMPAGE_only	3	3	16	1.357421	3.189898	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.937500
sigmoid_colon_female_adult_53_years	chr3	188225403	188225448	188225403	+	High_confidence	4	4	13	1.102905	2.855389	chr3	188225342	188225427	SINE|MIR|MIR3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.923077
sigmoid_colon_female_adult_53_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	48	53	86	7.296138	5.462383	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.802326
sigmoid_colon_female_adult_53_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	15	17	17	1.442260	3.616875	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.823529
sigmoid_colon_female_adult_53_years	chr9	122164574	122164597	122164595	+	High_confidence	112	161	276	23.415512	5.706757	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122164614	122200083	STRG.56891.4	+	122164614,122166767,122174495,122199884	122164647,122166915,122174627,122200083	0.891304
sigmoid_colon_female_adult_53_years	chr6	31587258	31587275	31587274	+	High_confidence	5	5	10	0.848388	2.721928	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	1.000000
sigmoid_colon_female_adult_53_years	chr2	38515474	38515517	38515502	-	High_confidence	8	8	22	1.866454	4.095795	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.681818
sigmoid_colon_female_adult_53_years	chr10	65570517	65570536	65570517	+	High_confidence	4	4	17	1.442260	3.625000	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.529412
sigmoid_colon_female_adult_53_years	chr15	55371804	55371818	55371804	-	RAMPAGE_only	2	2	7	0.593872	2.584963	chr15	55371592	55371758	SINE|MIR|MIRb	-	chr15	55358838	55372952	CCPG1|ENST00000568372.5	-	55358838,55365187,55371792	55360944,55365309,55372952	0.857143
sigmoid_colon_female_adult_53_years	chr12	122064375	122064376	122064375	+	RAMPAGE_only	49	50	66	5.599362	4.735598	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.924242
sigmoid_colon_female_adult_53_years	chr8	27977120	27977126	27977125	-	RAMPAGE_only	61	76	120	10.180657	5.501644	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.550000
sigmoid_colon_female_adult_53_years	chr20	50131093	50131140	50131139	-	High_confidence	35	35	98	8.314204	5.283946	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.989796
sigmoid_colon_female_adult_53_years	chr1	54277497	54277528	54277527	-	RAMPAGE_only	3	3	8	0.678710	2.521641	chr1	54277464	54277668	SINE|MIR|MIR1_Amn	+	chr1	54243236	54258098	STRG.2285.7	-	54243236,54251615,54251793,54257126,54258068	54243299,54251692,54251860,54257186,54258098	0.500000
sigmoid_colon_female_adult_53_years	chr20	21160833	21160834	21160833	+	RAMPAGE_only	25	28	30	2.545164	3.940760	chr20	21160661	21161021	LTR|ERVL-MaLR|MLT1A0	+	chr20	21145588	21246622	KIZ|ENST00000619179.4	+	21145588,21161870,21162849,21205490,21214534,21229010,21232733,21244244,21246478	21145654,21162507,21163159,21205584,21214700,21229115,21232830,21244288,21246622	0.933333
sigmoid_colon_female_adult_53_years	chr8	56559496	56559497	56559496	-	High_confidence	54	55	67	5.684200	5.075462	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.567164
sigmoid_colon_female_adult_53_years	chr6	48111150	48111197	48111150	-	RAMPAGE_only	5	5	19	1.611937	3.614369	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47878027	48068689	PTCHD4|NM_001013732.3	-	47878027,48008633,48068229	47879936,48009114,48068689	0.578947
sigmoid_colon_female_adult_53_years	chr20	45833305	45833321	45833307	-	High_confidence	15	33	81	6.871944	4.539088	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823323	45833370	STRG.93348.1	-	45823323,45823990,45824291,45824494,45824782,45833250	45823379,45824127,45824406,45824638,45824834,45833370	0.950617
sigmoid_colon_female_adult_53_years	chr7	101308295	101308300	101308299	+	High_confidence	7	7	13	1.102905	3.084963	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.923077
sigmoid_colon_female_adult_53_years	chr19	48868595	48868631	48868595	-	High_confidence	107	112	513	43.522311	7.043898	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48865521	48868591	STRG.91161.1	-	48865521,48867536,48868082	48865610,48867626,48868591	0.994152
sigmoid_colon_female_adult_53_years	chr19	34860622	34860654	34860653	-	High_confidence	9	9	15	1.272582	2.866248	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.666667
sigmoid_colon_female_adult_53_years	chr6	43013392	43013393	43013392	-	High_confidence	5	5	7	0.593872	2.807355	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
sigmoid_colon_female_adult_53_years	chr4	79086177	79086178	79086177	+	High_confidence	9	9	12	1.018066	3.022055	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.833333
sigmoid_colon_female_adult_53_years	chr9	39809843	39809857	39809843	-	High_confidence	4	4	13	1.102905	2.918296	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.769231
sigmoid_colon_female_adult_53_years	chr14	81170372	81170414	81170412	-	High_confidence	4	7	13	1.102905	3.022055	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.846154
sigmoid_colon_female_adult_53_years	chr10	79446868	79446869	79446868	-	RAMPAGE_only	7	7	10	0.848388	2.646439	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	1.000000
sigmoid_colon_female_adult_53_years	chr2	229232040	229232054	229232053	-	High_confidence	19	19	44	3.732908	4.768947	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.909091
sigmoid_colon_female_adult_53_years	chr14	102235451	102235465	102235458	-	High_confidence	4	6	13	1.102905	2.855389	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.923077
sigmoid_colon_female_adult_53_years	chr12	52056864	52056877	52056876	+	High_confidence	7	9	15	1.272582	3.373557	chr12	52056859	52057005	DNA|hAT-Tip100|MER91A	-	chr12	52056688	52059503	STRG.69015.14	+	52056688,52058687	52057530,52059503	1.000000
sigmoid_colon_female_adult_53_years	chr9	121313949	121314021	121314020	+	RAMPAGE_only	90	92	345	29.269390	5.294006	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.991304
sigmoid_colon_female_adult_53_years	chr11	123061207	123061328	123061256	-	High_confidence	22	26	108	9.162592	4.950619	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.935185
sigmoid_colon_female_adult_53_years	chr12	9065162	9065174	9065173	+	High_confidence	13	14	43	3.648069	4.797903	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.558140
sigmoid_colon_female_adult_53_years	chr19	3062922	3062983	3062922	-	High_confidence	34	37	122	10.350335	5.229312	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.991803
sigmoid_colon_female_adult_53_years	chr15	65642904	65642921	65642904	+	High_confidence	2	2	11	0.933227	2.921928	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	0.818182
sigmoid_colon_female_adult_53_years	chr8	143281669	143281687	143281686	-	High_confidence	29	36	80	6.787105	5.058165	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.550000
sigmoid_colon_female_adult_53_years	chr12	119179188	119179336	119179219	+	High_confidence	19	19	89	7.550654	4.176663	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.955056
sigmoid_colon_female_adult_53_years	chr15	25346006	25346026	25346025	-	High_confidence	3	4	8	0.678710	2.500000	chr15	25345979	25347018	LINE|L1|L1ME2	+	chr15	25333727	25346031	UBE3A|ENST00000636667.1	-	25333727,25340084,25345979	25339257,25340228,25346031	1.000000
sigmoid_colon_female_adult_53_years	chr19	47751084	47751103	47751102	+	RAMPAGE_only	5	7	13	1.102905	3.026987	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47745564	47756744	NOP53|ENST00000598681.5	+	47745564,47746966,47750177,47750907,47751519,47752511,47754526,47754708,47755347,47756527,47756687	47745783,47747031,47750286,47751107,47751590,47752607,47754631,47754891,47755523,47756604,47756744	1.000000
sigmoid_colon_female_adult_53_years	chr17	55882302	55882303	55882302	+	High_confidence	6	6	8	0.678710	2.750000	chr17	55882106	55882477	LTR|ERVL-MaLR|THE1C	+	chr17	55882300	56449186	ANKFN1|ENST00000635860.1	+	55882300,55938658,55965578,56046071,56227916,56326220,56350765,56353835,56372645,56374600,56440326,56442842,56449078	55882395,55938786,55965676,56046325,56227957,56326355,56350967,56354046,56372840,56374714,56440424,56442933,56449186	0.500000
sigmoid_colon_female_adult_53_years	chr4	5813646	5813677	5813646	+	RAMPAGE_only	2	2	10	0.848388	2.947703	chr4	5813642	5813697	LINE|CR1|L3	+	chr4	5793607	5829219	STRG.25372.4	+	5793607,5797021,5798585,5801949,5804729,5808200,5809517,5810338,5810952,5818210,5828518	5793717,5797232,5798792,5802094,5804841,5808327,5809611,5810450,5814162,5828216,5829219	0.900000
sigmoid_colon_female_adult_53_years	chr16	8842153	8842167	8842153	+	High_confidence	4	4	8	0.678710	2.500000	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	1.000000
sigmoid_colon_female_adult_53_years	chr11	72111453	72111497	72111488	-	High_confidence	2	2	9	0.763549	2.750000	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.888889
sigmoid_colon_female_adult_53_years	chr2	177836579	177836580	177836579	+	High_confidence	550	555	564	47.849090	6.073524	chr2	177835498	177837020	LTR|ERV1|LTR12C	+	chr2	177836593	177841732	STRG.14938.1	+	177836593,177838782,177840204,177841219	177837127,177838870,177840399,177841732	0.982270
sigmoid_colon_female_adult_53_years	chr19	20423688	20423704	20423703	-	RAMPAGE_only	18	24	46	3.902585	3.899114	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.695652
sigmoid_colon_female_adult_53_years	chr1	202551953	202551974	202551963	+	RAMPAGE_only	10	10	28	2.375487	4.280395	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.678571
sigmoid_colon_female_adult_53_years	chr1	21875639	21875658	21875640	-	High_confidence	4	7	14	1.187743	3.093069	chr1	21875470	21875616	SINE|MIR|MIRb	-	chr1	21874477	21875208	HSPG2|ENST00000498495.1	-	21874477,21874615,21874890	21874533,21874729,21875208	0.642857
sigmoid_colon_female_adult_53_years	chr8	119875396	119875430	119875415	+	RAMPAGE_only	9	18	40	3.393552	4.493943	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.700000
sigmoid_colon_female_adult_53_years	chr7	45192594	45192595	45192594	-	High_confidence	8	8	12	1.018066	3.084963	chr7	45192444	45192721	LTR|ERV1|LOR1a	-	chr7	45191848	45192414	STRG.45182.1	-	45191848	45192414	0.500000
sigmoid_colon_female_adult_53_years	chr2	218287279	218287306	218287279	-	High_confidence	37	38	99	8.399042	4.916488	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.919192
sigmoid_colon_female_adult_53_years	chr2	171555605	171555676	171555675	+	RAMPAGE_only	8	11	35	2.969358	3.542172	chr2	171555665	171555905	SINE|MIR|MIR	-	chr2	171522476	171557646	CYBRD1|ENST00000375252.3	+	171522476,171553345,171554523	171522738,171553500,171557646	1.000000
sigmoid_colon_female_adult_53_years	chr6	31587007	31587010	31587009	+	High_confidence	9	14	19	1.611937	2.974938	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.894737
sigmoid_colon_female_adult_53_years	chr20	3795750	3795781	3795750	+	High_confidence	6	8	26	2.205809	4.161978	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
sigmoid_colon_female_adult_53_years	chr9	129698737	129698744	129698743	+	RAMPAGE_only	5	5	14	1.187743	3.235926	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	1.000000
sigmoid_colon_female_adult_53_years	chr12	643627	643636	643635	-	High_confidence	13	13	31	2.630003	3.978334	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.935484
sigmoid_colon_female_adult_53_years	chrX	103536078	103536080	103536078	-	RAMPAGE_only	10	14	19	1.611937	3.239098	chrX	103535966	103536120	SINE|MIR|MIRb	+	chrX	103517289	103530891	STRG.100011.1	-	103517289,103523974,103526127,103526658,103530247,103530747	103517525,103524108,103526230,103526752,103530355,103530891	0.526316
sigmoid_colon_female_adult_53_years	chr20	50130098	50130118	50130101	-	High_confidence	19	20	60	5.090329	4.614891	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50130125	STRG.93494.8	-	50123769,50127974,50129545,50130051	50125179,50128187,50129690,50130125	0.933333
sigmoid_colon_female_adult_53_years	chr11	43881075	43881088	43881087	+	High_confidence	13	13	43	3.648069	4.481687	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.720930
sigmoid_colon_female_adult_53_years	chr3	536198	536256	536198	+	High_confidence	13	13	60	5.090329	4.822824	chr3	535186	536320	LTR|ERV1|LTR12D	-	chr3	536230	846015	LINC01266|ENST00000420823.5	+	536230,592104,750214,840714,842375	536327,592183,750250,840810,846015	0.600000
sigmoid_colon_female_adult_53_years	chr8	144106344	144106369	144106357	+	High_confidence	4	4	15	1.272582	2.985228	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.533333
sigmoid_colon_female_adult_53_years	chr12	46243208	46243237	46243236	-	RAMPAGE_only	3	3	10	0.848388	2.503258	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.900000
sigmoid_colon_female_adult_53_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	14	14	14	1.187743	3.182006	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.785714
sigmoid_colon_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	78	78	79	6.702266	3.889956	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.949367
sigmoid_colon_female_adult_53_years	chr5	151687237	151687252	151687251	-	High_confidence	6	7	31	2.630003	4.040224	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.967742
sigmoid_colon_female_adult_53_years	chr15	94099345	94099384	94099352	-	High_confidence	8	8	35	2.969358	4.436007	chr15	94099050	94099714	LINE|L1|L1M4a2	+	chr15	94064480	94099346	STRG.81059.3	-	94064480,94066768,94099256	94065292,94066928,94099346	0.542857
sigmoid_colon_female_adult_53_years	chr17	19386333	19386460	19386333	-	High_confidence	12	12	65	5.514523	5.121917	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	1.000000
sigmoid_colon_female_adult_53_years	chr8	99893444	99893445	99893444	-	High_confidence	5	6	7	0.593872	2.584963	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.857143
sigmoid_colon_female_adult_53_years	chr14	73567616	73567641	73567616	+	High_confidence	30	30	74	6.278072	4.792029	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.972973
sigmoid_colon_female_adult_53_years	chr12	16353931	16353965	16353939	+	High_confidence	7	7	26	2.205809	3.733661	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16353416	16364409	MGST1|ENST00000396207.1	+	16353416,16354230,16357604,16363794	16353467,16354378,16357699,16364409	0.807692
sigmoid_colon_female_adult_53_years	chrX	5726181	5726194	5726193	-	High_confidence	9	11	15	1.272582	3.324863	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.533333
sigmoid_colon_female_adult_53_years	chr3	50230995	50230996	50230995	+	High_confidence	11	11	11	0.933227	2.732159	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	1.000000
sigmoid_colon_female_adult_53_years	chr9	72363523	72363574	72363573	-	High_confidence	5	5	16	1.357421	3.125000	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.687500
sigmoid_colon_female_adult_53_years	chr4	152412488	152412529	152412488	-	High_confidence	5	5	21	1.781615	3.921928	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.952381
sigmoid_colon_female_adult_53_years	chr7	25839075	25839076	25839075	+	High_confidence	18	18	18	1.527099	3.836592	chr7	25838942	25839178	LTR|ERVL-MaLR|MLT1I	+	chr7	25839261	25847788	STRG.44219.1	+	25839261,25846727	25839353,25847788	0.944444
sigmoid_colon_female_adult_53_years	chr2	113625663	113625688	113625663	-	RAMPAGE_only	3	4	12	1.018066	2.625815	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	1.000000
sigmoid_colon_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	42	42	42	3.563230	4.201841	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
sigmoid_colon_female_adult_53_years	chr1	235589035	235589065	235589035	-	High_confidence	7	7	12	1.018066	3.095795	chr1	235589032	235589593	LTR|ERVL|LTR18B	+	chr1	235551753	235588959	GNG4|ENST00000484517.2	-	235551753,235583739,235588868	235552237,235583848,235588959	0.916667
sigmoid_colon_female_adult_53_years	chr9	111284874	111284890	111284874	-	High_confidence	28	29	42	3.563230	4.755296	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111272872	111284884	STRG.56312.1	-	111272872,111284619	111272965,111284884	0.785714
sigmoid_colon_female_adult_53_years	chr12	88419264	88419279	88419278	-	High_confidence	9	9	30	2.545164	4.111378	chr12	88418975	88419670	LINE|L2|L2a	+	chr12	88381585	88419261	STRG.70267.1	-	88381585,88419049	88382574,88419261	0.933333
sigmoid_colon_female_adult_53_years	chr11	119046573	119046604	119046603	-	RAMPAGE_only	3	3	8	0.678710	2.500000	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	1.000000
sigmoid_colon_female_adult_53_years	chr2	219434273	219434274	219434273	+	High_confidence	5	6	8	0.678710	2.521641	chr2	219433955	219434290	LINE|L2|L2c	+	chr2	219434845	219493632	SPEG|ENST00000312358.11	+	219434845,219444652,219444824,219447973,219451135,219451624,219461881,219462297,219464432,219467173,219468577,219468858,219469155,219471867,219472226,219472889,219473503,219473727,219476869,219477276,219477688,219477904,219479143,219479782,219479961,219480670,219481303,219481637,219482783,219483097,219485345,219488193,219488497,219488777,219489053,219489335,219490408,219490732,219491793,219492110,219492593	219435365,219444742,219445161,219449271,219451279,219451807,219462057,219462386,219464608,219467434,219468736,219469048,219469379,219471987,219472331,219473096,219473627,219473903,219476982,219477445,219477785,219478105,219479201,219479860,219480140,219480697,219481456,219481680,219482852,219485072,219485477,219488310,219488665,219488900,219489221,219489939,219490648,219490956,219491869,219492260,219493632	0.500000
sigmoid_colon_female_adult_53_years	chr11	77175226	77175303	77175302	+	High_confidence	23	23	77	6.532589	5.209850	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175369	77197602	STRG.64043.2	+	77175369,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353,77197480	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194524,77197602	0.948052
sigmoid_colon_female_adult_53_years	chr6	31587201	31587221	31587201	+	High_confidence	8	8	16	1.357421	3.327820	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.875000
sigmoid_colon_female_adult_53_years	chr11	65440270	65440333	65440332	+	RAMPAGE_only	5	5	40	3.393552	3.968212	chr11	65440323	65440484	SINE|Alu|AluJo	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.950000
sigmoid_colon_female_adult_53_years	chr12	45292681	45292693	45292692	+	High_confidence	7	7	17	1.442260	3.500000	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.941176
sigmoid_colon_female_adult_53_years	chr20	36125410	36125415	36125410	+	RAMPAGE_only	6	6	12	1.018066	2.845351	chr20	36125311	36125539	SINE|MIR|MIR	+	chr20	36154739	36232799	EPB41L1|NM_012156.2	+	36154739,36173763,36175550,36177951,36178629,36182271,36185116,36187675,36188346,36190276,36190621,36194211,36195328,36197858,36209487,36212271,36214356,36218875,36219760,36221863,36222277,36229331	36154896,36173954,36175715,36178056,36178672,36182347,36185335,36187763,36188499,36190374,36190797,36194360,36195364,36198041,36209898,36212376,36214440,36218962,36219844,36221944,36222394,36232799	0.750000
sigmoid_colon_female_adult_53_years	chr20	38985964	38985969	38985964	+	RAMPAGE_only	8	9	15	1.272582	3.324863	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.933333
sigmoid_colon_female_adult_53_years	chr6	118651542	118651626	118651592	-	High_confidence	34	34	218	18.494861	6.458889	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118460771	118651590	STRG.41326.2	-	118460771,118469071,118470536,118479870,118480395,118481778,118483705,118491685,118511297,118523801,118565528,118632452,118651196	118465568,118469303,118470644,118479921,118480513,118481933,118483858,118492555,118511415,118523920,118566316,118632611,118651590	0.981651
sigmoid_colon_female_adult_53_years	chr19	49086520	49086547	49086546	+	High_confidence	6	6	14	1.187743	3.324863	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.785714
sigmoid_colon_female_adult_53_years	chr9	129489058	129489126	129489125	+	High_confidence	9	11	33	2.799681	4.283200	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	1.000000
sigmoid_colon_female_adult_53_years	chr9	128921977	128922002	128921984	-	RAMPAGE_only	9	9	31	2.630003	4.123231	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128917735	128918021	STRG.57184.1	-	128917735	128918021	0.903226
sigmoid_colon_female_adult_53_years	chr4	2867827	2867851	2867850	+	High_confidence	3	4	8	0.678710	2.521641	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.875000
sigmoid_colon_female_adult_53_years	chr6	113873326	113873343	113873339	-	High_confidence	5	6	15	1.272582	3.235926	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.733333
sigmoid_colon_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	116	116	116	9.841302	3.736637	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
sigmoid_colon_female_adult_53_years	chr1	223785857	223785881	223785857	-	RAMPAGE_only	3	3	6	0.509033	2.584963	chr1	223785784	223785859	LINE|L1|L1ME3Cz	+	chr1	223780644	223800726	TP53BP2|ENST00000483398.5	-	223780644,223784114,223789007,223792388,223793302,223795814,223799898,223800699	223780894,223784314,223789174,223792522,223793440,223796590,223800047,223800726	1.000000
sigmoid_colon_female_adult_53_years	chr2	48529375	48529386	48529385	+	High_confidence	11	11	27	2.290648	4.403856	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	0.592593
sigmoid_colon_female_adult_53_years	chr2	177499695	177499714	177499695	+	RAMPAGE_only	4	4	10	0.848388	2.503258	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.500000
sigmoid_colon_female_adult_53_years	chr9	73160267	73160373	73160372	+	High_confidence	13	13	92	7.805171	5.190211	chr9	73160421	73160511	SINE|MIR|MIR	+	chr9	73160284	73165544	ANXA1|ENST00000489109.1	+	73160284,73160802,73162781,73163475,73165115	73160376,73160893,73162861,73163532,73165544	0.891304
sigmoid_colon_female_adult_53_years	chr2	55618852	55618870	55618869	-	High_confidence	4	4	8	0.678710	2.521641	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.750000
sigmoid_colon_female_adult_53_years	chr18	34709331	34709374	34709342	+	High_confidence	7	8	26	2.205809	4.161978	chr18	34709150	34709395	LINE|L2|L2c	-	chr18	34710231	34868812	DTNA|NM_001198941.1	+	34710231,34755975,34765960,34794036,34806218,34811958,34815908,34818163,34820790,34827592,34848295,34851830,34858284,34863965,34866110	34710445,34756043,34766041,34794250,34806304,34812113,34816014,34818330,34820915,34827676,34848383,34851928,34858398,34864062,34868812	0.807692
sigmoid_colon_male_adult_37_years	chr3	141429538	141429555	141429538	+	RAMPAGE_only	3	3	10	0.794248	2.921928	chr3	141429492	141430039	LINE|L2|L2a	-	chr3	141431722	141442722	ZBTB38|ENST00000509813.1	+	141431722,141442388	141432243,141442722	0.700000
sigmoid_colon_male_adult_37_years	chrX	11351608	11351637	11351636	-	RAMPAGE_only	4	4	12	0.953098	3.084963	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11182888	11353730	STRG.93790.5	-	11182888,11188727,11196924,11254547,11351385	11186431,11188984,11196996,11254707,11353730	0.833333
sigmoid_colon_male_adult_37_years	chrX	5726324	5726325	5726324	-	High_confidence	97	102	112	8.895577	5.163848	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.857143
sigmoid_colon_male_adult_37_years	chr21	28048446	28048447	28048446	+	High_confidence	37	37	46	3.653540	4.200703	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.826087
sigmoid_colon_male_adult_37_years	chr4	86453182	86453208	86453202	-	High_confidence	16	16	62	4.924337	4.754531	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.822581
sigmoid_colon_male_adult_37_years	chr11	123060168	123060256	123060168	-	High_confidence	55	56	247	19.617924	5.099510	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	0.991903
sigmoid_colon_male_adult_37_years	chr19	49817640	49817641	49817640	+	High_confidence	16	16	20	1.588496	3.241446	chr19	49817641	49817951	SINE|Alu|AluSx1	+	chr19	49817889	49818153	STRG.87631.1	+	49817889	49818153	0.550000
sigmoid_colon_male_adult_37_years	chr5	133089620	133089694	133089677	+	RAMPAGE_only	14	14	39	3.097567	4.599379	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
sigmoid_colon_male_adult_37_years	chr17	19386333	19386360	19386333	-	High_confidence	4	4	15	1.191372	3.182006	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.933333
sigmoid_colon_male_adult_37_years	chr5	32403115	32403116	32403115	-	RAMPAGE_only	6	6	9	0.714823	2.725481	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
sigmoid_colon_male_adult_37_years	chr14	102235451	102235481	102235458	-	High_confidence	6	6	16	1.270797	2.727217	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	1.000000
sigmoid_colon_male_adult_37_years	chr10	103181328	103181329	103181328	-	High_confidence	23	23	25	1.985620	3.588354	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103097307	103181874	STRG.58013.5	-	103097307,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857,103181184	103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982,103181874	0.640000
sigmoid_colon_male_adult_37_years	chr11	77175226	77175303	77175302	+	High_confidence	26	26	63	5.003762	4.746966	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175241	77191913	STRG.61463.2	+	77175241,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77191674	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77191913	0.984127
sigmoid_colon_male_adult_37_years	chr9	128921956	128921958	128921956	+	High_confidence	6	10	14	1.111947	2.661226	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.928571
sigmoid_colon_male_adult_37_years	chr5	14653390	14653391	14653390	-	High_confidence	75	76	76	6.036284	4.354452	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.986842
sigmoid_colon_male_adult_37_years	chr12	50924078	50924079	50924078	+	High_confidence	7	10	10	0.794248	2.921928	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	1.000000
sigmoid_colon_male_adult_37_years	chr16	27333283	27333288	27333283	+	RAMPAGE_only	71	76	130	10.325223	5.862142	chr16	27333168	27333399	LINE|CR1|L3	-	chr16	27341288	27364777	IL4R|ENST00000170630.6	+	27341288,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27364777	0.592308
sigmoid_colon_male_adult_37_years	chr9	121281891	121281892	121281891	+	RAMPAGE_only	9	9	13	1.032522	2.522055	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.615385
sigmoid_colon_male_adult_37_years	chr2	217939269	217939270	217939269	-	RAMPAGE_only	5	6	8	0.635398	2.807355	chr2	217939059	217939291	SINE|MIR|MIR	-	chr2	217803445	217944005	TNS1|ENST00000611415.4	-	217803445,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217830366,217831454,217835090,217836014,217847509,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217906334,217907209,217920194,217943864	217804603,217808107,217808671,217809991,217810319,217812445,217813304,217813816,217814998,217818759,217821938,217830390,217831547,217835166,217836211,217849087,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217906385,217907251,217920236,217944005	0.875000
sigmoid_colon_male_adult_37_years	chr5	128082243	128082287	128082243	-	High_confidence	4	4	12	0.953098	2.617492	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127966734	128082881	LINC01184|ENST00000508353.5	-	127966734,128076946,128082734	127966928,128077093,128082881	0.583333
sigmoid_colon_male_adult_37_years	chr19	3062922	3062983	3062922	-	High_confidence	52	68	238	18.903101	5.460255	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.983193
sigmoid_colon_male_adult_37_years	chr1	202551736	202551791	202551736	+	RAMPAGE_only	49	51	246	19.538499	6.371648	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.516260
sigmoid_colon_male_adult_37_years	chr2	3536839	3536875	3536845	-	High_confidence	10	10	45	3.574116	4.896821	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3532052	3536869	STRG.9072.1	-	3532052,3534112,3536197,3536723	3532310,3534255,3536313,3536869	0.888889
sigmoid_colon_male_adult_37_years	chr14	81170392	81170414	81170413	-	High_confidence	8	11	25	1.985620	3.157268	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.960000
sigmoid_colon_male_adult_37_years	chr8	11795578	11795579	11795578	+	High_confidence	108	108	117	9.292701	4.742085	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.974359
sigmoid_colon_male_adult_37_years	chr17	47067498	47067513	47067498	-	High_confidence	118	132	437	34.708635	5.539874	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.965675
sigmoid_colon_male_adult_37_years	chr11	58578126	58578156	58578130	-	High_confidence	8	11	36	2.859293	4.205110	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.611111
sigmoid_colon_male_adult_37_years	chr13	49433317	49433318	49433317	-	RAMPAGE_only	12	13	13	1.032522	2.792481	chr13	49433174	49433402	LINE|CR1|L3b	-	chr13	49310651	49444053	CAB39L|ENST00000410043.5	-	49310651,49331946,49339676,49344178,49350743,49359713,49376966,49382799,49401132,49433317,49434085,49443985	49310993,49332090,49339742,49344238,49350912,49359832,49377131,49382941,49401270,49433393,49434223,49444053	0.923077
sigmoid_colon_male_adult_37_years	chr12	93735596	93735642	93735641	-	RAMPAGE_only	4	4	13	1.032522	2.968919	chr12	93735619	93735742	SINE|Alu|AluJr	+	chr12	93707790	93737823	LOC101928731|NR_110092.1	-	93707790,93735564,93737698	93709083,93735733,93737823	1.000000
sigmoid_colon_male_adult_37_years	chr6	79631242	79631329	79631328	+	High_confidence	21	21	63	5.003762	5.002268	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.984127
sigmoid_colon_male_adult_37_years	chr14	68167226	68167238	68167237	-	RAMPAGE_only	3	5	9	0.714823	3.000000	chr14	68166677	68167265	LINE|L2|L2	+	chr14	68125003	68130196	AL133370.1|ENST00000554679.1	-	68125003,68130065	68125409,68130196	0.777778
sigmoid_colon_male_adult_37_years	chr2	218287266	218287280	218287279	-	High_confidence	13	13	29	2.303319	3.952303	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.862069
sigmoid_colon_male_adult_37_years	chr12	91179357	91179391	91179383	-	High_confidence	8	8	23	1.826770	3.788755	chr12	91179305	91179397	SINE|MIR|MIRb	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.956522
sigmoid_colon_male_adult_37_years	chr3	52615423	52615438	52615423	-	High_confidence	3	3	7	0.555974	2.584963	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.714286
sigmoid_colon_male_adult_37_years	chr12	9065159	9065171	9065169	+	High_confidence	7	13	33	2.621018	4.718488	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.757576
sigmoid_colon_male_adult_37_years	chr6	26474340	26474346	26474345	+	RAMPAGE_only	6	6	17	1.350221	3.625000	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.823529
sigmoid_colon_male_adult_37_years	chr11	102868389	102868390	102868389	-	RAMPAGE_only	7	7	11	0.873673	2.663533	chr11	102868195	102868394	DNA|hAT-Charlie|MER20	-	chr11	102867296	102871929	STRG.62552.1	-	102867296,102867907,102871593,102871803	102867393,102868069,102871719,102871929	0.909091
sigmoid_colon_male_adult_37_years	chr19	47780107	47780108	47780107	+	High_confidence	7	8	10	0.794248	2.646439	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	1.000000
sigmoid_colon_male_adult_37_years	chr9	123179220	123179221	123179220	-	RAMPAGE_only	8	8	12	0.953098	2.550341	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.583333
sigmoid_colon_male_adult_37_years	chr12	7502517	7502547	7502517	-	High_confidence	7	7	27	2.144469	4.032303	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	1.000000
sigmoid_colon_male_adult_37_years	chr11	3380960	3380961	3380960	+	High_confidence	17	17	17	1.350221	3.219528	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.823529
sigmoid_colon_male_adult_37_years	chr2	70257706	70257707	70257706	+	High_confidence	11	11	12	0.953098	2.732159	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.916667
sigmoid_colon_male_adult_37_years	chr2	105329673	105329674	105329673	-	High_confidence	4	4	7	0.555974	2.807355	chr2	105329666	105329774	LTR|ERV1|LTR2752	-	chr2	105264389	105329714	TGFBRAP1|NM_001142621.2	-	105264389,105269271,105272854,105273543,105275559,105277613,105280381,105284315,105296355,105298510,105307613,105329624	105267559,105269705,105273014,105273690,105275703,105277671,105280723,105284398,105296510,105298705,105308315,105329714	1.000000
sigmoid_colon_male_adult_37_years	chrX	11351666	11351676	11351675	-	RAMPAGE_only	32	35	57	4.527213	4.641379	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11182888	11353730	STRG.93790.5	-	11182888,11188727,11196924,11254547,11351385	11186431,11188984,11196996,11254707,11353730	0.561404
sigmoid_colon_male_adult_37_years	chr10	72355145	72355146	72355145	-	High_confidence	4	4	6	0.476549	2.584963	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
sigmoid_colon_male_adult_37_years	chr7	107580245	107580267	107580245	+	High_confidence	641	643	2942	233.667741	6.442632	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.966349
sigmoid_colon_male_adult_37_years	chr9	127543805	127543810	127543805	-	RAMPAGE_only	7	7	16	1.270797	3.250000	chr9	127543678	127543822	LINE|L2|L2c	+	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.500000
sigmoid_colon_male_adult_37_years	chr16	53445773	53445781	53445775	+	High_confidence	3	5	12	0.953098	2.663533	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.916667
sigmoid_colon_male_adult_37_years	chr19	49086520	49086521	49086520	+	High_confidence	9	10	10	0.794248	2.641604	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.900000
sigmoid_colon_male_adult_37_years	chr19	36850349	36850377	36850371	+	High_confidence	3	3	9	0.714823	2.947703	chr19	36850362	36850429	LTR|ERV1|MER67D	-	chr19	36850360	36879572	ZNF345|ENST00000589046.1	+	36850360,36851727,36876784	36850515,36851904,36879572	0.666667
sigmoid_colon_male_adult_37_years	chr2	200889279	200889294	200889293	-	High_confidence	25	25	49	3.891815	5.165730	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.653061
sigmoid_colon_male_adult_37_years	chr16	15798664	15798670	15798664	-	RAMPAGE_only	130	163	269	21.365269	6.281192	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.888476
sigmoid_colon_male_adult_37_years	chr5	109383422	109383465	109383459	-	High_confidence	6	6	18	1.429646	3.281036	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
sigmoid_colon_male_adult_37_years	chr14	102083165	102083295	102083165	-	RAMPAGE_only	8	8	90	7.148231	5.247079	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.966667
sigmoid_colon_male_adult_37_years	chr2	48529371	48529386	48529385	+	High_confidence	22	22	61	4.844912	4.969146	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	0.803279
sigmoid_colon_male_adult_37_years	chr5	149430203	149430370	149430280	+	RAMPAGE_only	14	14	87	6.909957	4.615895	chr5	149430274	149430385	SINE|MIR|MIRb	-	chr5	149406963	149432835	STRG.33020.7	+	149406963,149421480,149424089,149431477	149407078,149421601,149431447,149432835	0.954023
sigmoid_colon_male_adult_37_years	chr14	34462794	34462795	34462794	-	High_confidence	7	7	9	0.714823	2.947703	chr14	34462624	34462760	LINE|L2|L2a	-	chr14	34432788	34462356	SPTSSA|ENST00000298130.4	-	34432788,34462095	34435304,34462356	0.777778
sigmoid_colon_male_adult_37_years	chr20	50267474	50267502	50267474	+	High_confidence	12	17	49	3.891815	4.197686	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.959184
sigmoid_colon_male_adult_37_years	chr8	22392835	22392884	22392883	+	High_confidence	6	6	17	1.350221	3.577820	chr8	22392932	22392982	LINE|L2|L2b	+	chr8	22392829	22404870	SLC39A14|ENST00000520832.1	+	22392829,22404695	22393232,22404870	0.529412
sigmoid_colon_male_adult_37_years	chr9	20658321	20658349	20658348	+	High_confidence	12	17	53	4.209514	4.207834	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.849057
sigmoid_colon_male_adult_37_years	chr15	94099349	94099355	94099352	-	High_confidence	8	10	20	1.588496	3.576618	chr15	94099050	94099714	LINE|L1|L1M4a2	+	chr15	94064464	94099369	STRG.76812.2	-	94064464,94066768,94099256	94065292,94066879,94099369	0.850000
sigmoid_colon_male_adult_37_years	chr12	15001778	15001811	15001807	+	High_confidence	4	5	15	1.191372	2.682589	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.666667
sigmoid_colon_male_adult_37_years	chr7	87040212	87040213	87040212	-	RAMPAGE_only	5	5	8	0.635398	3.000000	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.750000
sigmoid_colon_male_adult_37_years	chr15	98017769	98017790	98017769	-	High_confidence	86	92	316	25.098235	6.837475	chr15	98016264	98017842	LINE|L2|L2a	+	chr15	97968273	98017807	STRG.77003.2	-	97968273,98016428	97997372,98017807	0.981013
sigmoid_colon_male_adult_37_years	chr19	35115804	35115823	35115816	+	High_confidence	7	7	18	1.429646	3.616875	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_021910.2	+	35115827,35116263,35119167,35119362,35121077,35121221,35122764,35123270,35123440	35115959,35116359,35119251,35119416,35121110,35121245,35122954,35123308,35124324	0.722222
sigmoid_colon_male_adult_37_years	chr20	21160831	21160834	21160833	+	RAMPAGE_only	16	26	26	2.065045	3.767183	chr20	21160661	21161021	LTR|ERVL-MaLR|MLT1A0	+	chr20	21145588	21246622	KIZ|ENST00000619179.4	+	21145588,21161870,21162849,21205490,21214534,21229010,21232733,21244244,21246478	21145654,21162507,21163159,21205584,21214700,21229115,21232830,21244288,21246622	1.000000
sigmoid_colon_male_adult_37_years	chr2	96303166	96303189	96303166	-	RAMPAGE_only	5	5	18	1.429646	3.219528	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.944444
sigmoid_colon_male_adult_37_years	chr20	3795750	3795789	3795750	+	High_confidence	14	15	58	4.606638	5.163763	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
sigmoid_colon_male_adult_37_years	chr2	177837061	177837117	177837116	-	RAMPAGE_only	2	2	7	0.555974	2.584963	chr2	177837020	177837462	LTR|ERV1|HUERS-P3b-int	+	chr2	177727676	177875880	STRG.14223.1	-	177727676,177728025,177769322,177816828,177817857,177820219,177840250,177875858	177727765,177728172,177769373,177816921,177817925,177820295,177840383,177875880	0.857143
sigmoid_colon_male_adult_37_years	chr9	68975783	68975846	68975842	-	High_confidence	96	100	284	22.556641	5.845302	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68971006	68975858	STRG.51916.1	-	68971006,68975663	68972641,68975858	0.654930
sigmoid_colon_male_adult_37_years	chr7	101217578	101217599	101217578	-	High_confidence	2	2	9	0.714823	3.169925	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
sigmoid_colon_male_adult_37_years	chr7	116239250	116239251	116239250	-	RAMPAGE_only	26	27	37	2.938717	4.648510	chr7	116238900	116239327	LTR|ERVL-MaLR|MLT1E2	-	chr7	116237107	116238190	STRG.44636.1	-	116237107	116238190	0.702703
sigmoid_colon_male_adult_37_years	chr1	111608273	111608319	111608318	-	High_confidence	4	4	32	2.541593	4.312500	chr1	111607038	111608899	Retroposon|SVA|SVA_D	-	chr1	111599006	111608318	LINC01160|NR_034126.1	-	111599006,111602191,111604368,111604628,111608135	111600095,111602255,111604500,111604702,111608318	0.906250
sigmoid_colon_male_adult_37_years	chr9	39810047	39810084	39810083	-	High_confidence	5	7	23	1.826770	3.186393	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39777349	39810097	GLIDR|ENST00000638724.1	-	39777349,39778893,39809485,39809730	39778566,39778944,39809615,39810097	0.826087
sigmoid_colon_male_adult_37_years	chr6	169654673	169654696	169654690	-	RAMPAGE_only	4	4	17	1.350221	3.280639	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169457211	169649233	WDR27|ENST00000479310.5	-	169457211,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197	169457634,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649233	0.588235
sigmoid_colon_male_adult_37_years	chr1	6208681	6208682	6208681	-	High_confidence	124	124	124	9.848674	3.730415	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.975806
sigmoid_colon_male_adult_37_years	chr5	140633665	140633680	140633679	-	High_confidence	4	6	11	0.873673	2.921928	chr5	140633624	140633721	LINE|CR1|L3	+	chr5	140631727	140633701	CD14|ENST00000302014.10	-	140631727,140633068	140632980,140633701	0.909091
sigmoid_colon_male_adult_37_years	chr18	36122250	36122251	36122250	-	High_confidence	5	7	7	0.555974	2.521641	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.857143
sigmoid_colon_male_adult_37_years	chr16	85534614	85534649	85534614	+	RAMPAGE_only	4	5	13	1.032522	2.873141	chr16	85534421	85534727	LINE|L1|L1MB2	-	chr16	85555963	85634133	STRG.79620.6	+	85555963,85633913	85556363,85634133	0.538462
sigmoid_colon_male_adult_37_years	chr8	11808251	11808258	11808251	+	High_confidence	3	3	12	0.953098	2.751629	chr8	11807810	11808255	LTR|ERV1|MER31B	-	chr8	11808416	11838967	FDFT1|ENST00000525954.5	+	11808416,11809666,11821749,11826023,11830243,11831517,11838387	11808891,11809850,11821878,11826215,11830420,11831670,11838967	1.000000
sigmoid_colon_male_adult_37_years	chr9	129957386	129957399	129957386	-	RAMPAGE_only	4	4	9	0.714823	2.503258	chr9	129957031	129957337	SINE|Alu|AluSq	-	chr9	129895267	129994867	FNBP1|ENST00000449089.6	-	129895267,129899964,129900425,129902868,129908889,129923843,129924959,129927194,129929566,129957359,129958490,129978464,129979317,129994842	129895996,129900101,129900547,129903001,129908999,129923996,129925157,129927341,129929695,129957464,129958553,129978612,129979374,129994867	0.888889
sigmoid_colon_male_adult_37_years	chr1	19980361	19980363	19980361	-	High_confidence	4	8	8	0.635398	2.500000	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	1.000000
sigmoid_colon_male_adult_37_years	chr2	229232040	229232054	229232053	-	High_confidence	15	16	37	2.938717	4.465946	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.675676
sigmoid_colon_male_adult_37_years	chr7	6590285	6590293	6590292	+	High_confidence	5	5	12	0.953098	2.855389	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	1.000000
sigmoid_colon_male_adult_37_years	chr16	15740077	15740182	15740077	-	RAMPAGE_only	95	96	470	37.329653	7.254553	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.976596
sigmoid_colon_male_adult_37_years	chr19	20423697	20423704	20423701	-	RAMPAGE_only	6	6	22	1.747345	3.341446	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20340367	20424959	ZNF826P|ENST00000541160.5	-	20340367,20408949,20424785	20341101,20409045,20424959	0.545455
sigmoid_colon_male_adult_37_years	chr8	53523963	53523966	53523963	-	High_confidence	9	9	19	1.509071	3.725481	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.947368
sigmoid_colon_male_adult_37_years	chr14	68041154	68041155	68041154	+	RAMPAGE_only	8	8	12	0.953098	2.751629	chr14	68040968	68041350	LTR|ERVL-MaLR|MSTA	+	chr14	67819778	68611565	RAD51B|ENST00000487861.5	+	67819778,67823541,67825463,67835079,67865002,67885868,67887020,68291883,68411423,68468171,68611005	67819853,67823627,67825577,67835196,67865139,67885988,67887204,68291980,68411527,68468250,68611565	0.500000
sigmoid_colon_male_adult_37_years	chr2	96638006	96638023	96638006	-	High_confidence	2	2	11	0.873673	2.845351	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.545455
sigmoid_colon_male_adult_37_years	chr3	33838237	33838257	33838256	+	RAMPAGE_only	7	7	14	1.111947	2.661226	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.571429
sigmoid_colon_male_adult_37_years	chr22	36471182	36471212	36471211	+	High_confidence	24	25	73	5.798010	4.996588	chr22	36471205	36471377	LTR|ERVL|LTR86A2	+	chr22	36471763	36472369	STRG.92740.1	+	36471763	36472369	0.698630
sigmoid_colon_male_adult_37_years	chr2	11201318	11201340	11201318	-	RAMPAGE_only	2	2	8	0.635398	2.750000	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	1.000000
sigmoid_colon_male_adult_37_years	chr14	51599920	51600018	51599923	-	High_confidence	26	27	114	9.054426	5.251138	chr14	51599913	51599958	SINE|MIR|MIR3	+	chr14	51546628	51599920	FRMD6-AS2|ENST00000557625.1	-	51546628,51547706,51584165,51599826	51546820,51547883,51584283,51599920	0.807018
sigmoid_colon_male_adult_37_years	chr15	94070559	94070561	94070560	-	High_confidence	4	7	11	0.873673	2.845351	chr15	94070430	94070669	SINE|5S-Deu-L2|AmnSINE1	-	chr15	94064368	94070820	LINC01579|ENST00000555772.1	-	94064368,94066768,94070523	94065292,94066879,94070820	1.000000
sigmoid_colon_male_adult_37_years	chr16	20676201	20676202	20676201	-	High_confidence	6	6	8	0.635398	2.500000	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	1.000000
sigmoid_colon_male_adult_37_years	chrX	5726193	5726256	5726193	-	High_confidence	15	15	34	2.700443	4.051602	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.764706
sigmoid_colon_male_adult_37_years	chr2	48479481	48479482	48479481	+	High_confidence	32	33	38	3.018142	4.168466	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48478942	48515386	STRG.10573.4	+	48478942,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515386	0.921053
sigmoid_colon_male_adult_37_years	chr20	45407849	45407870	45407861	-	High_confidence	4	4	12	0.953098	3.095795	chr20	45407777	45407881	SINE|MIR|MIRb	-	chr20	45404075	45407877	TP53TG5|ENST00000468375.1	-	45404075,45405716,45407748	45404307,45405820,45407877	0.500000
sigmoid_colon_male_adult_37_years	chr8	99893471	99893497	99893471	-	High_confidence	6	6	23	1.826770	3.697846	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.956522
sigmoid_colon_male_adult_37_years	chr1	89272854	89272887	89272867	-	High_confidence	8	8	49	3.891815	4.420234	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	1.000000
sigmoid_colon_male_adult_37_years	chr16	4355592	4355593	4355592	-	High_confidence	76	78	78	6.195134	4.772204	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.923077
sigmoid_colon_male_adult_37_years	chr10	65570509	65570520	65570519	+	High_confidence	11	13	47	3.732965	4.771598	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570524	65586264	STRG.55977.2	+	65570524,65571424,65572934,65585484	65570759,65571579,65573056,65586264	0.765957
sigmoid_colon_male_adult_37_years	chr11	43881087	43881096	43881089	+	High_confidence	3	6	10	0.794248	2.721928	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.900000
sigmoid_colon_male_adult_37_years	chr16	87950440	87950488	87950487	+	High_confidence	9	9	35	2.779868	3.462463	chr16	87950440	87950735	SINE|Alu|AluSx1	-	chr16	87950435	87981049	BANP|ENST00000423252.5	+	87950435,87975047,87981035	87950927,87975185,87981049	0.971429
sigmoid_colon_male_adult_37_years	chr10	89888929	89888930	89888929	+	RAMPAGE_only	9	12	12	0.953098	2.732159	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.666667
sigmoid_colon_male_adult_37_years	chr12	103777160	103777441	103777288	-	RAMPAGE_only	35	36	295	23.430314	3.950902	chr12	103777216	103777295	DNA|TcMar-Tigger|Tigger19b	+	chr12	103772302	103841197	NT5DC3|NM_001031701.2	-	103772302,103780299,103785334,103787440,103788837,103793163,103793409,103793936,103796893,103798586,103806321,103806854,103814936,103840948	103778081,103780364,103785475,103787527,103788919,103793265,103793512,103793997,103797031,103798677,103806377,103806929,103815121,103841197	0.996610
sigmoid_colon_male_adult_37_years	chr2	36513704	36513757	36513735	+	RAMPAGE_only	3	3	15	1.191372	3.056565	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36356226	36551135	CRIM1|NM_016441.2	+	36356226,36396613,36441257,36442614,36464533,36476888,36479496,36499218,36509982,36512272,36513555,36517326,36522091,36537351,36544375,36546983,36548524	36356623,36396787,36441500,36442735,36464655,36477071,36479694,36499347,36510139,36512394,36513765,36517542,36522313,36537546,36544498,36547171,36551135	1.000000
sigmoid_colon_male_adult_37_years	chr11	64226142	64226180	64226158	-	High_confidence	67	69	309	24.542261	6.437070	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.987055
sigmoid_colon_male_adult_37_years	chr8	119875414	119875430	119875415	+	RAMPAGE_only	9	14	24	1.906195	3.882045	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.833333
sigmoid_colon_male_adult_37_years	chr18	7946878	7946898	7946878	+	High_confidence	30	30	85	6.751107	5.016387	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.823529
sigmoid_colon_male_adult_37_years	chr1	174874418	174874454	174874418	+	High_confidence	3	5	16	1.270797	3.202820	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.500000
sigmoid_colon_male_adult_37_years	chr12	69353526	69353532	69353531	+	RAMPAGE_only	9	11	21	1.667921	3.784942	chr12	69353494	69353787	SINE|Alu|AluY	-	chr12	69348353	69354233	LYZ|NM_000239.2	+	69348353,69350107,69352219,69353152	69348544,69350272,69352298,69354233	0.952381
sigmoid_colon_male_adult_37_years	chr19	11539700	11539730	11539729	+	High_confidence	7	7	33	2.621018	4.453189	chr19	11539660	11539789	SINE|MIR|MIRb	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	0.969697
sigmoid_colon_male_adult_37_years	chr1	153967486	153967517	153967486	+	High_confidence	11	12	29	2.303319	3.424174	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.862069
sigmoid_colon_male_adult_37_years	chr19	48868595	48868617	48868610	-	High_confidence	170	187	924	73.388509	7.456719	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48865508	48868626	STRG.87536.1	-	48865508,48867536,48868082	48865610,48867626,48868626	0.998918
sigmoid_colon_male_adult_37_years	chrX	16712889	16712959	16712958	-	High_confidence	7	7	33	2.621018	3.717896	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16587998	16712979	CTPS2|NM_019857.4	-	16587998,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712979	1.000000
sigmoid_colon_male_adult_37_years	chr8	11795986	11796010	11795986	+	High_confidence	24	24	45	3.574116	4.642085	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.933333
sigmoid_colon_male_adult_37_years	chr9	121281844	121281851	121281844	+	RAMPAGE_only	6	7	12	0.953098	2.918296	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.750000
sigmoid_colon_male_adult_37_years	chr7	158740231	158740281	158740280	-	RAMPAGE_only	16	16	59	4.686063	5.060112	chr7	158740209	158740388	LTR|ERV1|MER49	+	chr7	158733612	158744217	ESYT2|ENST00000435514.3	-	158733612,158734421,158735502,158737047,158739022,158741522,158743528	158734252,158734471,158735608,158737179,158739121,158741896,158744217	0.508475
sigmoid_colon_male_adult_37_years	chr6	31587007	31587010	31587009	+	High_confidence	12	19	21	1.667921	4.037401	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.904762
sigmoid_colon_male_adult_37_years	chr3	11094886	11094894	11094886	+	High_confidence	17	17	34	2.700443	3.132753	chr3	11093853	11095310	LTR|ERV1|LTR12C	+	chr3	11094911	11095550	STRG.17050.1	+	11094911	11095550	0.970588
sigmoid_colon_male_adult_37_years	chr11	60182527	60182576	60182550	-	High_confidence	4	4	13	1.032522	2.855389	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.769231
sigmoid_colon_male_adult_37_years	chr20	37297344	37297388	37297344	+	High_confidence	3	3	9	0.714823	2.725481	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.777778
sigmoid_colon_male_adult_37_years	chr8	30508157	30508190	30508189	+	RAMPAGE_only	6	6	20	1.588496	4.121928	chr8	30507969	30508353	LTR|ERVL-MaLR|MLT1B	+	chr8	30479329	30570757	STRG.47172.14	+	30479329,30504285,30544493,30558886	30479377,30504436,30556794,30570757	0.500000
sigmoid_colon_male_adult_37_years	chr10	102449836	102449837	102449836	+	High_confidence	4	4	6	0.476549	2.584963	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.833333
sigmoid_colon_male_adult_37_years	chr4	122700443	122700444	122700443	+	RAMPAGE_only	9	13	13	1.032522	3.026987	chr4	122700197	122700669	LTR|ERVL|MER70A	+	chr4	122732701	122744942	BBS12|ENST00000542236.5	+	122732701,122733903,122741882	122732884,122734091,122744942	0.538462
sigmoid_colon_male_adult_37_years	chr6	31587195	31587259	31587201	+	High_confidence	13	13	53	4.209514	3.892369	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	1.000000
sigmoid_colon_male_adult_37_years	chr12	10363964	10363965	10363964	+	High_confidence	12	13	18	1.429646	3.350209	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.944444
sigmoid_colon_male_adult_37_years	chr7	111413970	111413985	111413984	-	High_confidence	3	3	9	0.714823	2.947703	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	111410909	111414663	STRG.44381.1	-	111410909	111414663	0.555556
sigmoid_colon_male_adult_37_years	chr9	73080369	73080370	73080369	-	High_confidence	14	14	15	1.191372	2.549523	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.933333
sigmoid_colon_male_adult_37_years	chr1	20071002	20071044	20071002	+	High_confidence	4	4	18	1.429646	3.836592	chr1	20071025	20071259	SINE|MIR|MIR	+	chr1	20070294	20090828	PLA2G5|ENST00000478803.1	+	20070294,20076760,20084820,20086082,20088824,20089788,20090567	20070465,20076898,20084870,20086227,20088901,20089895,20090828	0.888889
sigmoid_colon_male_adult_37_years	chr12	91179462	91179549	91179525	-	High_confidence	856	1131	4842	384.574847	7.216568	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91175117	91179533	DCN|ENST00000551354.1	-	91175117,91178341,91179361	91177625,91178585,91179533	0.676993
sigmoid_colon_male_adult_37_years	chr1	240339096	240339120	240339096	+	High_confidence	8	9	23	1.826770	4.106603	chr1	240338677	240339204	DNA|hAT-Charlie|MER1A	-	chr1	240338900	240475174	STRG.8606.3	+	240338900,240355815,240392510,240438060,240472371,240474127	240339249,240355908,240392562,240438210,240472453,240475174	0.826087
sigmoid_colon_male_adult_37_years	chr5	140700445	140700452	140700445	+	High_confidence	649	751	1208	95.945150	4.984071	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.990066
sigmoid_colon_male_adult_37_years	chr6	3720076	3720077	3720076	-	High_confidence	144	145	182	14.455312	5.351202	chr6	3719558	3721329	LTR|ERV1|LTR12C	-	chr6	3688484	3720166	STRG.34438.2	-	3688484,3719362	3688641,3720166	0.956044
sigmoid_colon_male_adult_37_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	11	11	11	0.873673	2.913977	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.818182
sigmoid_colon_male_adult_37_years	chr3	114759276	114759301	114759276	-	High_confidence	3	3	11	0.873673	2.721928	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.636364
sigmoid_colon_male_adult_37_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	8	8	8	0.635398	2.750000	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
sigmoid_colon_male_adult_37_years	chr2	240022172	240022236	240022172	-	RAMPAGE_only	6	6	25	1.985620	2.932817	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.960000
sigmoid_colon_male_adult_37_years	chr19	9140393	9140428	9140393	+	High_confidence	19	19	42	3.335841	4.315668	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.785714
sigmoid_colon_male_adult_37_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	28	31	31	2.462169	3.910179	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
sigmoid_colon_male_adult_37_years	chr8	143558019	143558020	143558019	+	High_confidence	9	9	9	0.714823	2.725481	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.666667
sigmoid_colon_male_adult_37_years	chr6	118651542	118651626	118651563	-	High_confidence	41	41	196	15.567259	6.407019	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.964286
sigmoid_colon_male_adult_37_years	chr9	122164574	122164597	122164595	+	High_confidence	313	459	814	64.651781	6.225482	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122164614	122174568	MORN5|ENST00000418632.1	+	122164614,122166767,122169644,122174495	122164647,122166915,122169756,122174568	0.656020
sigmoid_colon_male_adult_37_years	chr20	18794063	18794086	18794077	+	High_confidence	45	45	124	9.848674	4.186346	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.983871
sigmoid_colon_male_adult_37_years	chr1	202551973	202551995	202551994	+	RAMPAGE_only	15	25	45	3.574116	4.754442	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.577778
sigmoid_colon_male_adult_37_years	chr1	147172956	147172976	147172975	+	High_confidence	4	5	12	0.953098	3.277613	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.916667
sigmoid_colon_male_adult_37_years	chr6	127330892	127330938	127330937	-	High_confidence	5	5	13	1.032522	2.719295	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	1.000000
sigmoid_colon_male_adult_37_years	chr11	71999605	71999642	71999614	+	High_confidence	13	24	102	8.101329	5.351169	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.950980
sigmoid_colon_male_adult_37_years	chr7	80369552	80369569	80369568	+	High_confidence	6	6	12	0.953098	3.084963	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.916667
sigmoid_colon_male_adult_37_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	6	6	6	0.476549	2.584963	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
sigmoid_colon_male_adult_37_years	chr12	119179224	119179241	119179240	+	High_confidence	3	4	9	0.714823	2.725481	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	1.000000
sigmoid_colon_male_adult_37_years	chr7	134432378	134432451	134432450	-	High_confidence	5	5	29	2.303319	3.409153	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	1.000000
sigmoid_colon_male_adult_37_years	chr17	59619874	59619923	59619894	+	High_confidence	749	849	2656	210.952250	5.381031	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.982681
sigmoid_colon_male_adult_37_years	chr10	133370001	133370020	133370016	-	RAMPAGE_only	4	6	15	1.191372	2.896292	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.933333
sigmoid_colon_male_adult_37_years	chr1	78620056	78620058	78620056	+	High_confidence	6	10	10	0.794248	2.521928	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78641968	IFI44L|ENST00000476521.5	+	78620381,78628950,78629719,78635336,78637099,78641020,78641434,78641774	78620571,78628999,78629915,78635489,78637203,78641121,78641609,78641968	1.000000
sigmoid_colon_male_adult_37_years	chr12	643627	643636	643635	-	High_confidence	9	9	31	2.462169	3.745406	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.935484
sigmoid_colon_male_adult_37_years	chr9	129488679	129488857	129488856	+	High_confidence	22	22	196	15.567259	5.600147	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.933673
sigmoid_colon_male_adult_37_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	17	18	27	2.144469	4.026987	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.814815
sigmoid_colon_male_adult_37_years	chr8	93496634	93496635	93496634	-	RAMPAGE_only	25	25	30	2.382744	3.578001	chr8	93496587	93496792	DNA|hAT-Blackjack|MER63A	+	chr8	93213309	93420880	LINC00535|ENST00000520096.5	-	93213309,93302924,93340175,93346692,93362519,93420766	93213520,93303034,93340257,93346906,93362578,93420880	0.633333
sigmoid_colon_male_adult_37_years	chr13	110343317	110343358	110343317	-	High_confidence	14	18	52	4.130089	4.649878	chr13	110343178	110343277	DNA|TcMar-Tigger|Tigger19a	-	chr13	110342621	110343311	STRG.70448.1	-	110342621	110343311	0.903846
sigmoid_colon_male_adult_37_years	chr14	32402135	32402136	32402135	+	RAMPAGE_only	19	19	19	1.509071	3.010571	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32428364	32837681	STRG.70898.2	+	32428364,32433459,32535553,32545229,32577119,32599409,32600628,32678310,32695989,32732453,32735657,32773677,32821401,32829847	32428565,32433817,32535805,32546999,32577242,32599506,32600792,32678459,32696110,32732600,32735882,32773893,32824815,32837681	0.947368
sigmoid_colon_male_adult_37_years	chr10	28335269	28335306	28335305	-	High_confidence	53	54	244	19.379649	4.618262	chr10	28335237	28335330	SINE|Alu|AluYc	-	chr10	28117818	28335310	STRG.55111.3	-	28117818,28120193,28120593,28124030,28125009,28131559,28147482,28149981,28202152,28238567,28334869	28119715,28120390,28120668,28124116,28125091,28131691,28147563,28150059,28202271,28238735,28335310	0.979508
sigmoid_colon_male_adult_37_years	chrX	24077101	24077141	24077116	+	RAMPAGE_only	4	7	23	1.826770	3.393127	chrX	24077071	24077365	SINE|Alu|AluSx	-	chrX	24054947	24078810	EIF2S3|NM_001415.3	+	24054947,24055614,24057420,24057632,24060087,24062415,24064200,24065997,24067963,24071557,24073090,24076721	24055037,24055678,24057548,24057754,24060182,24062574,24064335,24066092,24068108,24071727,24073263,24078810	0.956522
sigmoid_colon_male_adult_37_years	chr11	123061191	123061322	123061256	-	High_confidence	29	32	139	11.040046	5.206208	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.985612
sigmoid_colon_male_adult_37_years	chr8	53523862	53523896	53523862	-	High_confidence	6	6	21	1.667921	4.011365	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.952381
sigmoid_colon_male_adult_37_years	chrX	53585017	53585060	53585017	-	RAMPAGE_only	5	5	15	1.191372	3.235926	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.800000
sigmoid_colon_male_adult_37_years	chr2	48479384	48479385	48479384	+	High_confidence	25	26	32	2.541593	4.389365	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48478942	48515386	STRG.10573.4	+	48478942,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515386	0.875000
sigmoid_colon_male_adult_37_years	chr15	80059915	80059930	80059918	+	High_confidence	48	58	102	8.101329	4.937173	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.970588
sigmoid_colon_male_adult_37_years	chr3	114624940	114625007	114625006	-	High_confidence	11	14	89	7.068807	5.021540	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.730337
sigmoid_colon_male_adult_37_years	chr12	95381141	95381243	95381141	-	High_confidence	14	14	82	6.512833	5.413540	chr12	95380967	95381176	DNA|hAT-Charlie|MER102a	+	chr12	95366649	95381235	STRG.67286.7	-	95366649,95380726	95377369,95381235	0.792683
sigmoid_colon_male_adult_37_years	chr2	177836579	177836580	177836579	+	High_confidence	80	80	82	6.512833	4.766683	chr2	177835498	177837020	LTR|ERV1|LTR12C	+	chr2	177836593	177837245	STRG.14227.1	+	177836593	177837245	0.963415
sigmoid_colon_male_adult_37_years	chr20	50131130	50131140	50131139	-	High_confidence	68	69	175	13.899339	5.932488	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.982857
sigmoid_colon_male_adult_37_years	chr16	20674497	20674498	20674497	+	High_confidence	29	30	30	2.382744	3.964735	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.900000
sigmoid_colon_male_adult_37_years	chr1	19345874	19345875	19345874	-	RAMPAGE_only	14	15	17	1.350221	3.202820	chr1	19345766	19345872	SINE|MIR|MIRc	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.705882
sigmoid_colon_male_adult_37_years	chr4	141332616	141332617	141332616	-	High_confidence	18	18	22	1.747345	3.203702	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.909091
sigmoid_colon_male_adult_37_years	chr20	50130098	50130128	50130101	-	High_confidence	10	10	50	3.971240	4.624315	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50130109	STRG.89857.4	-	50123769,50127974,50129545,50130051	50125179,50128187,50129690,50130109	0.960000
sigmoid_colon_male_adult_37_years	chr7	99410146	99410147	99410146	+	High_confidence	11	11	14	1.111947	3.378783	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.785714
sigmoid_colon_male_adult_37_years	chr18	46087019	46087043	46087042	-	High_confidence	5	5	11	0.873673	2.732159	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	1.000000
sigmoid_colon_male_adult_37_years	chr8	56559496	56559497	56559496	-	High_confidence	12	12	12	0.953098	3.251629	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.500000
sigmoid_colon_male_adult_37_years	chr12	104030726	104030727	104030726	+	High_confidence	19	20	28	2.223894	4.356558	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.928571
sigmoid_colon_male_adult_37_years	chr3	16697460	16697471	16697460	-	RAMPAGE_only	3	3	17	1.350221	2.889549	chr3	16697224	16697676	LTR|ERV1|LTR49-int	-	chr3	16648077	16648582	STRG.17323.1	-	16648077	16648582	0.882353
sigmoid_colon_male_adult_37_years	chr9	121313981	121314021	121314002	+	RAMPAGE_only	35	37	175	13.899339	5.302410	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
sigmoid_colon_male_adult_37_years	chr3	164451245	164451263	164451245	+	High_confidence	6	6	10	0.794248	3.321928	chr3	164449656	164452200	LINE|L1|L1PA15	-	chr3	164451463	164532444	STRG.22294.1	+	164451463,164532285	164451535,164532444	0.500000
sigmoid_colon_male_adult_37_years	chr6	77369117	77369171	77369138	-	RAMPAGE_only	3	3	11	0.873673	3.277613	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77271353	77273309	STRG.37025.1	-	77271353,77273026	77271493,77273309	0.727273
sigmoid_colon_male_adult_37_years	chr21	29077477	29077487	29077477	+	High_confidence	5	5	14	1.111947	2.835238	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077474	29091576	MAP3K7CL|ENST00000419845.5	+	29077474,29080551,29085812,29091500	29077713,29080708,29085917,29091576	0.928571
sigmoid_colon_male_adult_37_years	chr12	122064375	122064376	122064375	+	High_confidence	133	135	179	14.217038	5.446668	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063904	122070146	STRG.68040.2	+	122063904,122068027	122064682,122070146	0.782123
sigmoid_colon_male_adult_37_years	chr10	35449714	35449735	35449734	+	RAMPAGE_only	7	7	26	2.065045	3.979098	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.730769
sigmoid_colon_male_adult_37_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	12	12	15	1.191372	3.240224	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86441460	86492716	KDM3A|ENST00000409064.5	+	86441460,86442017,86449806,86451102,86455084,86456441,86456804,86456982,86464052,86466371,86470203,86474775,86477876,86478169,86478607,86480166,86481929,86482457,86483986,86484941,86485728,86489317,86489519,86490880,86491140,86492038	86441488,86442233,86449962,86451213,86455187,86456566,86456877,86457071,86464216,86466883,86470408,86474990,86478029,86478265,86478735,86480362,86482102,86482694,86484158,86485029,86485859,86489437,86489659,86491057,86491275,86492716	0.933333
sigmoid_colon_male_adult_37_years	chr11	134355923	134355984	134355923	+	RAMPAGE_only	4	4	15	1.191372	2.896292	chr11	134353426	134356184	LINE|L1|L1MB3	-	chr11	134346389	134378341	GLB1L2|ENST00000529077.5	+	134346389,134347324,134356300,134359059,134359539,134360253,134364327,134367054,134367256,134368643,134369804,134370292,134371007,134371420,134371751,134372429,134373720,134374144,134374601,134374971,134377117,134378063	134347142,134347433,134356393,134359141,134360021,134361542,134364398,134367139,134367341,134368781,134369885,134370399,134371148,134371492,134371830,134372598,134373808,134374256,134374718,134376024,134377254,134378341	0.933333
sigmoid_colon_male_adult_37_years	chr17	4143199	4143244	4143199	+	High_confidence	30	30	75	5.956859	4.596212	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.986667
sigmoid_colon_male_adult_37_years	chr2	217937115	217937162	217937161	-	High_confidence	21	24	50	3.971240	4.576175	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.640000
sigmoid_colon_male_adult_37_years	chr14	81192669	81192682	81192681	-	RAMPAGE_only	6	6	15	1.191372	3.039149	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.933333
sigmoid_colon_male_adult_37_years	chr9	129489096	129489126	129489125	+	High_confidence	18	27	49	3.891815	4.884168	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.775510
sigmoid_colon_male_adult_37_years	chr8	143281669	143281687	143281686	-	High_confidence	23	28	90	7.148231	5.091209	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.555556
sigmoid_colon_male_adult_37_years	chr3	135965670	135965749	135965748	+	High_confidence	38	39	232	18.426552	6.212636	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.982759
sigmoid_colon_male_adult_37_years	chr4	2867814	2867851	2867814	+	High_confidence	5	6	20	1.588496	3.681881	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.950000
sigmoid_colon_male_adult_37_years	chr1	184590801	184590803	184590801	+	RAMPAGE_only	3	6	7	0.555974	2.521641	chr1	184590844	184591183	DNA|TcMar-Tigger|MER2B	+	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	1.000000
sigmoid_colon_male_adult_37_years	chr17	57093074	57093103	57093102	+	RAMPAGE_only	6	6	13	1.032522	2.873141	chr17	57093082	57093237	DNA|hAT-Charlie|MER105	-	chr17	57095843	57120570	AKAP1|ENST00000572557.5	+	57095843,57105440,57110024,57111797,57112490,57114458,57116110,57116859,57118380,57118981,57120249	57095959,57107178,57110158,57111924,57112618,57114636,57116261,57116927,57118454,57119044,57120570	0.846154
sigmoid_colon_male_adult_37_years	chr7	154928492	154928506	154928503	+	High_confidence	12	14	26	2.065045	3.893661	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.884615
sigmoid_colon_male_adult_37_years	chr9	111284874	111284875	111284874	-	High_confidence	13	14	16	1.270797	3.006239	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.625000
sigmoid_colon_male_adult_37_years	chr15	25346025	25346028	25346027	-	High_confidence	3	5	7	0.555974	2.584963	chr15	25345979	25347018	LINE|L1|L1ME2	+	chr15	25333727	25346031	UBE3A|ENST00000636667.1	-	25333727,25340084,25345979	25339257,25340228,25346031	0.857143
sigmoid_colon_male_adult_37_years	chr9	130268668	130268700	130268668	+	RAMPAGE_only	3	3	26	2.065045	3.825252	chr9	130268629	130268697	LINE|L2|L2b	-	chr9	130265881	130434123	HMCN2|ENST00000624552.3	+	130265881,130284602,130285157,130286187,130294854,130295665,130296673,130299024,130302856,130303486,130304729,130306128,130306810,130307452,130309911,130319494,130320355,130320775,130321786,130325594,130325810,130327309,130337893,130341110,130342349,130347165,130348544,130348983,130349536,130351422,130352926,130354762,130355745,130356087,130357833,130358389,130359318,130360427,130362007,130362866,130364713,130365630,130365875,130368275,130369569,130370963,130372293,130373037,130374501,130375562,130375875,130376515,130377648,130379248,130382183,130382678,130383503,130384372,130384684,130385559,130386442,130388408,130390976,130391203,130391449,130391934,130393211,130393741,130394384,130395026,130395210,130395923,130396168,130397527,130398607,130399510,130400782,130402788,130403193,130403740,130404868,130405954,130407570,130408742,130410570,130418771,130422576,130424775,130425008,130425686,130427312,130427496,130428357,130429556,130430283,130431366,130432428,130433347	130266137,130284673,130285316,130286310,130295026,130295772,130296794,130299288,130303001,130303608,130305002,130306270,130306938,130307566,130310061,130319695,130320451,130320903,130321931,130325707,130325970,130327475,130338021,130341365,130342436,130347360,130348675,130349131,130349663,130351577,130353205,130355044,130355854,130356257,130357988,130358486,130359414,130360604,130362165,130362990,130364889,130365727,130365995,130368437,130369851,130371131,130372407,130373124,130374693,130375736,130375989,130376658,130377799,130379467,130382297,130382866,130383600,130384534,130384798,130385762,130386524,130388540,130391120,130391363,130391574,130392118,130393309,130394008,130394575,130395108,130395347,130396065,130396313,130397655,130398707,130399632,130400947,130402896,130403328,130403875,130405059,130406168,130407705,130408933,130410652,130419041,130422726,130424913,130425130,130425924,130427375,130427619,130428489,130429685,130430604,130431486,130432555,130434123	0.884615
sigmoid_colon_male_adult_37_years	chr1	162799341	162799379	162799378	+	High_confidence	11	11	18	1.429646	3.155222	chr1	162799022	162799670	LINE|L1|L1MC3	-	chr1	162799503	162804312	HSD17B7|ENST00000494450.1	+	162799503,162803430,162804266	162799937,162803535,162804312	0.888889
sigmoid_colon_male_adult_37_years	chr1	54413492	54413493	54413492	-	High_confidence	9	9	14	1.111947	2.931209	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54412707	54413466	SSBP3|ENST00000448572.1	-	54412707,54413080,54413355	54412877,54413253,54413466	0.642857
sigmoid_colon_male_adult_37_years	chr2	229586868	229586927	229586868	-	High_confidence	6	6	23	1.826770	3.914866	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229580153	229587177	DNER|ENST00000482831.1	-	229580153,229585857,229586693	229580344,229586024,229587177	0.521739
sigmoid_colon_male_adult_37_years	chr3	169812903	169812904	169812903	-	High_confidence	5	5	7	0.555974	2.521641	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.857143
sigmoid_colon_male_adult_37_years	chrX	48683361	48683363	48683361	+	High_confidence	17	27	27	2.144469	3.943465	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.925926
sigmoid_colon_male_adult_37_years	chr4	158173024	158173025	158173024	-	High_confidence	94	99	113	8.975002	5.461211	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158124603	158173023	STRG.28001.4	-	158124603,158155610,158170465,158172867	158131012,158155825,158171599,158173023	0.929204
sigmoid_colon_male_adult_37_years	chr7	90154183	90154184	90154183	+	High_confidence	5	5	8	0.635398	2.750000	chr7	90154032	90154206	DNA|hAT-Charlie|MER5A	+	chr7	90154374	90164827	STEAP1|ENST00000297205.6	+	90154374,90159757,90160804,90161913,90164476	90154543,90159872,90161317,90162078,90164827	1.000000
sigmoid_colon_male_adult_37_years	chr3	187738135	187738136	187738135	+	High_confidence	215	235	279	22.159517	5.575840	chr3	187738117	187738188	SINE|MIR|MIR3	-	chr3	187738071	187739236	STRG.23190.1	+	187738071	187739236	0.982079
sigmoid_colon_male_adult_37_years	chr15	62894552	62894583	62894552	+	RAMPAGE_only	6	6	16	1.270797	3.250000	chr15	62894534	62894826	SINE|Alu|AluSx3	+	chr15	62895811	62899543	AC103740.2|ENST00000557900.1	+	62895811,62898650	62896143,62899543	1.000000
sigmoid_colon_male_adult_37_years	chr5	147382877	147382900	147382899	+	High_confidence	7	8	12	0.953098	3.084963	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.916667
sigmoid_colon_male_adult_37_years	chr17	2975621	2975672	2975671	+	RAMPAGE_only	4	4	18	1.429646	3.350209	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2853798	3037738	STRG.79848.1	+	2853798,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2854102,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037738	0.944444
sigmoid_colon_male_adult_37_years	chr16	2757793	2757815	2757814	+	High_confidence	5	5	13	1.032522	2.855389	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.923077
sigmoid_colon_male_adult_37_years	chr11	72111484	72111494	72111484	-	High_confidence	8	8	13	1.032522	2.584963	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72108817	72111497	ANAPC15|ENST00000538117.5	-	72108817,72109228,72110087,72110543,72111156,72111411	72108875,72109341,72110225,72110603,72111281,72111497	0.769231
sigmoid_colon_male_adult_37_years	chr20	38985938	38985969	38985964	+	RAMPAGE_only	4	4	17	1.350221	3.454822	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962363	39005040	STRG.89546.4	+	38962363,38969080,38972558,38983698,38988812,38991453,38992355,38994820,39001729,39003748	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39002868,39005040	0.882353
sigmoid_colon_male_adult_54_years	chr1	202551736	202551798	202551736	+	RAMPAGE_only	60	62	469	42.988841	6.671109	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.682303
sigmoid_colon_male_adult_54_years	chr20	18794054	18794086	18794077	+	High_confidence	14	14	46	4.216390	4.865635	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794077	18795984	STRG.92174.1	+	18794077,18794530	18794106,18795984	0.760870
sigmoid_colon_male_adult_54_years	chr20	45833293	45833323	45833320	-	High_confidence	6	6	24	2.199855	3.403107	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
sigmoid_colon_male_adult_54_years	chr12	643625	643636	643625	-	High_confidence	9	9	34	3.116462	4.278352	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.529412
sigmoid_colon_male_adult_54_years	chr7	158740240	158740306	158740280	-	RAMPAGE_only	31	31	138	12.649169	5.941990	chr7	158740209	158740388	LTR|ERV1|MER49	+	chr7	158733612	158744217	ESYT2|ENST00000435514.3	-	158733612,158734421,158735502,158737047,158739022,158741522,158743528	158734252,158734471,158735608,158737179,158739121,158741896,158744217	0.601449
sigmoid_colon_male_adult_54_years	chr13	110179288	110179309	110179288	-	RAMPAGE_only	4	4	17	1.558231	3.734522	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	1.000000
sigmoid_colon_male_adult_54_years	chr1	202582431	202582450	202582431	+	RAMPAGE_only	5	6	15	1.374910	3.182006	chr1	202581884	202582432	LINE|CR1|L3	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.866667
sigmoid_colon_male_adult_54_years	chr12	16353884	16353885	16353884	+	High_confidence	14	15	18	1.649892	3.572469	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.500000
sigmoid_colon_male_adult_54_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	15	15	15	1.374910	3.240224	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
sigmoid_colon_male_adult_54_years	chr12	122064375	122064376	122064375	+	High_confidence	76	77	106	9.716028	5.530110	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122064356	122068558	STRG.71573.2	+	122064356,122064549,122068027,122068288	122064433,122064682,122068191,122068558	0.735849
sigmoid_colon_male_adult_54_years	chr9	20658301	20658349	20658348	+	High_confidence	19	32	70	6.416245	4.258208	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658335	20793113	STRG.53698.4	+	20658335,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20793113	0.885714
sigmoid_colon_male_adult_54_years	chr19	11196126	11196219	11196126	-	High_confidence	10	16	66	6.049602	4.516363	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.939394
sigmoid_colon_male_adult_54_years	chr2	218287266	218287280	218287266	-	High_confidence	10	10	32	2.933141	3.796961	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.812500
sigmoid_colon_male_adult_54_years	chr20	50130092	50130118	50130101	-	High_confidence	77	79	233	21.356929	6.073316	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50124043	50130257	STRG.92968.4	-	50124043,50127974,50129545,50130051	50125179,50128187,50129690,50130257	0.965665
sigmoid_colon_male_adult_54_years	chr17	15475732	15475733	15475732	-	High_confidence	12	12	17	1.558231	3.101881	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15437858	15475728	CDRT4|ENST00000520956.2	-	15437858,15475600	15438200,15475728	0.705882
sigmoid_colon_male_adult_54_years	chr17	2667165	2667196	2667195	+	High_confidence	4	4	11	1.008267	3.277613	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.909091
sigmoid_colon_male_adult_54_years	chr19	47780106	47780108	47780107	+	High_confidence	16	25	34	3.116462	4.354852	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.970588
sigmoid_colon_male_adult_54_years	chr9	123179178	123179221	123179187	-	RAMPAGE_only	5	5	17	1.558231	3.101881	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.941176
sigmoid_colon_male_adult_54_years	chr14	51599875	51599924	51599923	-	High_confidence	10	11	21	1.924873	3.249460	chr14	51599913	51599958	SINE|MIR|MIR3	+	chr14	51546628	51599920	FRMD6-AS2|ENST00000557625.1	-	51546628,51547706,51584165,51599826	51546820,51547883,51584283,51599920	0.619048
sigmoid_colon_male_adult_54_years	chr7	6044570	6044589	6044570	-	RAMPAGE_only	3	4	8	0.733285	2.500000	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6041152	6046437	EIF2AK1|ENST00000470168.1	-	6041152,6042932,6044561,6046070	6041219,6042993,6044661,6046437	0.750000
sigmoid_colon_male_adult_54_years	chr19	33395160	33395188	33395160	-	High_confidence	2	3	8	0.733285	2.521641	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	0.875000
sigmoid_colon_male_adult_54_years	chr19	9140393	9140428	9140393	+	High_confidence	22	22	84	7.699494	4.856411	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.892857
sigmoid_colon_male_adult_54_years	chr10	65570512	65570522	65570521	+	High_confidence	11	15	46	4.216390	4.877376	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.717391
sigmoid_colon_male_adult_54_years	chr6	26474345	26474348	26474347	+	RAMPAGE_only	4	7	11	1.008267	3.027169	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	1.000000
sigmoid_colon_male_adult_54_years	chr12	91179462	91179549	91179462	-	High_confidence	630	646	3065	280.939866	7.415231	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.507015
sigmoid_colon_male_adult_54_years	chr2	38083053	38083054	38083053	+	High_confidence	5	5	8	0.733285	2.750000	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.500000
sigmoid_colon_male_adult_54_years	chrX	16712889	16712900	16712889	-	High_confidence	4	4	11	1.008267	2.921928	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.909091
sigmoid_colon_male_adult_54_years	chr3	188225368	188225407	188225368	+	High_confidence	2	2	11	1.008267	2.921928	chr3	188225342	188225427	SINE|MIR|MIR3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.636364
sigmoid_colon_male_adult_54_years	chr19	47751102	47751103	47751102	+	RAMPAGE_only	9	9	14	1.283249	3.238901	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47745564	47756744	NOP53|ENST00000598681.5	+	47745564,47746966,47750177,47750907,47751519,47752511,47754526,47754708,47755347,47756527,47756687	47745783,47747031,47750286,47751107,47751590,47752607,47754631,47754891,47755523,47756604,47756744	0.928571
sigmoid_colon_male_adult_54_years	chr20	37297378	37297388	37297387	+	High_confidence	6	6	17	1.558231	3.500000	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.941176
sigmoid_colon_male_adult_54_years	chr8	143281669	143281687	143281669	-	High_confidence	16	16	46	4.216390	4.613858	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281250	MINCR|ENST00000519852.5	-	143280827,143281092	143280997,143281250	0.543478
sigmoid_colon_male_adult_54_years	chr11	123060156	123060256	123060168	-	High_confidence	35	38	199	18.240468	5.103342	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.608040
sigmoid_colon_male_adult_54_years	chr1	202582562	202582572	202582571	+	RAMPAGE_only	6	6	11	1.008267	3.121928	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.909091
sigmoid_colon_male_adult_54_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	5	5	11	1.008267	2.721928	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.909091
sigmoid_colon_male_adult_54_years	chr9	92536601	92536602	92536601	-	High_confidence	9	13	13	1.191588	2.918296	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.923077
sigmoid_colon_male_adult_54_years	chr9	121313981	121314021	121314002	+	RAMPAGE_only	92	96	360	32.997831	5.488316	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.997222
sigmoid_colon_male_adult_54_years	chr10	72355145	72355153	72355145	-	High_confidence	6	6	10	0.916606	2.947703	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.900000
sigmoid_colon_male_adult_54_years	chr5	70401442	70401503	70401467	+	High_confidence	14	14	59	5.407978	4.497021	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70401409	70447526	STRG.32154.10	+	70401409,70420248,70421279,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70401668,70420337,70421357,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.898305
sigmoid_colon_male_adult_54_years	chr1	51403428	51403453	51403428	-	RAMPAGE_only	11	11	27	2.474837	3.320478	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	1.000000
sigmoid_colon_male_adult_54_years	chr9	68975752	68975846	68975842	-	High_confidence	62	62	201	18.423789	5.726027	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68971010	68975836	STRG.54783.1	-	68971010,68975663	68972641,68975836	0.582090
sigmoid_colon_male_adult_54_years	chr12	46243269	46243306	46243269	-	RAMPAGE_only	2	3	11	1.008267	2.550341	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	1.000000
sigmoid_colon_male_adult_54_years	chr12	103841793	103841798	103841797	-	High_confidence	15	17	29	2.658159	4.280395	chr12	103841795	103841885	LTR|Gypsy?|LTR85a	-	chr12	103772302	103841197	NT5DC3|NM_001031701.2	-	103772302,103780299,103785334,103787440,103788837,103793163,103793409,103793936,103796893,103798586,103806321,103806854,103814936,103840948	103778081,103780364,103785475,103787527,103788919,103793265,103793512,103793997,103797031,103798677,103806377,103806929,103815121,103841197	0.551724
sigmoid_colon_male_adult_54_years	chr4	86453182	86453207	86453206	-	High_confidence	11	15	72	6.599566	4.262896	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.930556
sigmoid_colon_male_adult_54_years	chr15	98016496	98016508	98016496	-	RAMPAGE_only	15	15	29	2.658159	3.952303	chr15	98016264	98017842	LINE|L2|L2a	+	chr15	97960255	98017769	STRG.80960.9	-	97960255,98016428	97997372,98017769	0.827586
sigmoid_colon_male_adult_54_years	chr5	151687237	151687245	151687244	-	High_confidence	9	9	16	1.466570	2.840224	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151662487	151687232	STRG.35326.1	-	151662487,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687232	0.812500
sigmoid_colon_male_adult_54_years	chr20	50131130	50131151	50131139	-	High_confidence	114	118	335	30.706315	6.255234	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.985075
sigmoid_colon_male_adult_54_years	chr14	81427431	81427462	81427441	-	High_confidence	5	5	25	2.291516	3.688722	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.960000
sigmoid_colon_male_adult_54_years	chr3	33143869	33144003	33144002	+	RAMPAGE_only	21	22	92	8.432779	4.020996	chr3	33143477	33144307	LINE|L2|L2a	-	chr3	33113978	33147773	CRTAP|ENST00000320954.10	+	33113978,33120343,33124407,33129938,33132554,33134181,33142394	33114548,33120493,33124579,33130067,33132700,33134265,33147773	1.000000
sigmoid_colon_male_adult_54_years	chr19	20423696	20423704	20423697	-	High_confidence	14	21	32	2.933141	3.934530	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20340655	20423694	STRG.89359.3	-	20340655,20408949,20423480	20341101,20409045,20423694	0.750000
sigmoid_colon_male_adult_54_years	chrX	5726116	5726129	5726116	-	High_confidence	15	18	23	2.108195	2.881195	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719170	5726299	STRG.96418.1	-	5719170,5725929	5719872,5726299	0.913043
sigmoid_colon_male_adult_54_years	chr17	47067498	47067513	47067498	-	High_confidence	293	303	776	71.128658	5.570216	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.949742
sigmoid_colon_male_adult_54_years	chr11	77175226	77175303	77175302	+	High_confidence	15	16	48	4.399711	4.554173	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175253	77215066	STRG.64362.1	+	77175253,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353,77197480,77198494,77199648,77201447,77202299,77203059,77204075,77205461,77206096,77207288,77208429,77208696,77211151,77211820,77212951,77213859,77214606	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194524,77197598,77198621,77199818,77201638,77202424,77203217,77204229,77205617,77206202,77207402,77208517,77208803,77211337,77211937,77213035,77213979,77215066	0.958333
sigmoid_colon_male_adult_54_years	chr6	140898421	140898430	140898421	-	High_confidence	2	2	8	0.733285	3.000000	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845955	140898391	STRG.41698.1	-	140845955,140898187	140846304,140898391	0.750000
sigmoid_colon_male_adult_54_years	chr9	110170695	110170696	110170695	+	RAMPAGE_only	9	9	13	1.191588	3.026987	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
sigmoid_colon_male_adult_54_years	chr2	48529375	48529386	48529375	+	High_confidence	16	16	32	2.933141	4.054229	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	0.906250
sigmoid_colon_male_adult_54_years	chr2	177836579	177836580	177836579	+	High_confidence	1848	1869	1925	176.446735	6.145727	chr2	177835498	177837020	LTR|ERV1|LTR12C	+	chr2	177836586	177841747	STRG.14041.2	+	177836586,177838782,177840204	177837127,177838870,177841747	0.969870
sigmoid_colon_male_adult_54_years	chr17	82081601	82081674	82081603	-	RAMPAGE_only	8	13	44	4.033068	4.461091	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	0.909091
sigmoid_colon_male_adult_54_years	chr3	139344535	139344548	139344547	+	High_confidence	6	6	15	1.374910	3.373557	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	1.000000
sigmoid_colon_male_adult_54_years	chr16	81181319	81181331	81181330	-	High_confidence	10	10	19	1.741552	3.215841	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	1.000000
sigmoid_colon_male_adult_54_years	chr4	185620092	185620144	185620125	-	RAMPAGE_only	7	11	46	4.216390	4.751610	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.782609
sigmoid_colon_male_adult_54_years	chr22	18149858	18149869	18149868	+	High_confidence	6	6	11	1.008267	2.521928	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.909091
sigmoid_colon_male_adult_54_years	chr4	152412489	152412498	152412497	-	High_confidence	4	5	8	0.733285	2.500000	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
sigmoid_colon_male_adult_54_years	chr21	28048446	28048447	28048446	+	High_confidence	164	166	177	16.223934	4.266503	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.966102
sigmoid_colon_male_adult_54_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	23	25	26	2.383177	3.517559	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.961538
sigmoid_colon_male_adult_54_years	chr5	157384903	157384939	157384938	-	High_confidence	17	18	63	5.774620	4.970010	chr5	157384657	157384963	SINE|Alu|AluSx1	+	chr5	157375740	157384939	AC008676.1|ENST00000508443.1	-	157375740,157384212	157376945,157384939	0.571429
sigmoid_colon_male_adult_54_years	chr11	58578129	58578133	58578132	-	High_confidence	11	20	32	2.933141	4.438067	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	STRG.63486.3	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58576733	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.968750
sigmoid_colon_male_adult_54_years	chr2	229232040	229232054	229232053	-	High_confidence	38	40	67	6.141263	5.076064	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.955224
sigmoid_colon_male_adult_54_years	chr8	11795959	11795987	11795986	+	High_confidence	16	16	33	3.024801	4.331977	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.969697
sigmoid_colon_male_adult_54_years	chr8	99893444	99893487	99893471	-	High_confidence	17	17	50	4.583032	4.246964	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.980000
sigmoid_colon_male_adult_54_years	chr6	111387800	111387809	111387800	-	RAMPAGE_only	7	7	12	1.099928	2.732159	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.916667
sigmoid_colon_male_adult_54_years	chr19	3062924	3062983	3062982	-	High_confidence	38	41	162	14.849024	5.656444	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.987654
sigmoid_colon_male_adult_54_years	chr16	4355592	4355593	4355592	-	High_confidence	41	42	42	3.849747	4.324271	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.809524
sigmoid_colon_male_adult_54_years	chr5	115956591	115956676	115956591	+	High_confidence	7	7	56	5.132996	4.829277	chr5	115956262	115957250	LINE|L2|L2b	-	chr5	115956584	115958501	STRG.33678.1	+	115956584,115958428	115956920,115958501	0.571429
sigmoid_colon_male_adult_54_years	chrX	147937516	147937562	147937561	+	RAMPAGE_only	3	3	8	0.733285	2.521641	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.100859.10	+	147940580,147943130,147945533,147948733	147940662,147945051,147945616,147950315	0.875000
sigmoid_colon_male_adult_54_years	chr10	69494978	69494985	69494978	+	High_confidence	3	3	9	0.824946	2.750000	chr10	69494989	69495143	SINE|MIR|MIR3	+	chr10	69494970	69507077	TSPAN15|ENST00000486093.5	+	69494970,69495593,69498279,69504437,69506123,69506828	69495036,69495689,69498396,69504485,69506240,69507077	0.888889
sigmoid_colon_male_adult_54_years	chr9	113484732	113484734	113484733	+	RAMPAGE_only	5	9	9	0.824946	2.725481	chr9	113484629	113484751	SINE|MIR|MIR	+	chr9	113501370	113507509	RGS3|ENST00000466314.5	+	113501370,113505017,113505441,113506387,113507286	113501434,113505092,113505523,113506493,113507509	0.555556
sigmoid_colon_male_adult_54_years	chr17	4143196	4143215	4143199	+	High_confidence	79	79	219	20.073680	5.631530	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.977169
sigmoid_colon_male_adult_54_years	chr18	46087015	46087066	46087042	-	High_confidence	7	7	21	1.924873	3.684184	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.761905
sigmoid_colon_male_adult_54_years	chr10	103181328	103181329	103181328	-	High_confidence	8	8	9	0.824946	2.500000	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103169283	103181320	NT5C2|ENST00000467380.1	-	103169283,103174857,103181184	103169449,103174982,103181320	0.777778
sigmoid_colon_male_adult_54_years	chr2	3536839	3536899	3536839	-	High_confidence	9	9	66	6.049602	5.033348	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531821	3536869	STRG.8680.1	-	3531821,3534112,3536197,3536723	3532310,3534255,3536313,3536869	0.924242
sigmoid_colon_male_adult_54_years	chr10	95437800	95437816	95437815	-	RAMPAGE_only	13	13	29	2.658159	4.235926	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.586207
sigmoid_colon_male_adult_54_years	chr10	95493183	95493213	95493183	-	RAMPAGE_only	2	2	10	0.916606	2.721928	chr10	95493013	95493319	SINE|Alu|AluSg	+	chr10	95414743	95482671	SORBS1|ENST00000492542.1	-	95414743,95421960,95432447,95437489,95441125,95482433	95414862,95422073,95432576,95437555,95441180,95482671	0.800000
sigmoid_colon_male_adult_54_years	chr8	11795578	11795579	11795578	+	High_confidence	241	241	262	24.015088	5.205864	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.958015
sigmoid_colon_male_adult_54_years	chr12	8668595	8668621	8668620	+	RAMPAGE_only	16	16	35	3.208122	4.331977	chr12	8668440	8668935	LTR|ERVL-MaLR|MLT1F2	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.600000
sigmoid_colon_male_adult_54_years	chr17	2975659	2975682	2975660	+	RAMPAGE_only	7	13	24	2.199855	3.886842	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2853965	3037707	STRG.83667.1	+	2853965,2905283,2957758,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2854102,2905368,2957794,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037707	1.000000
sigmoid_colon_male_adult_54_years	chr22	39021125	39021156	39021125	+	High_confidence	4	4	17	1.558231	3.405639	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.941176
sigmoid_colon_male_adult_54_years	chrX	5726193	5726194	5726193	-	High_confidence	7	7	10	0.916606	2.921928	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5719170	5726299	STRG.96418.1	-	5719170,5725929	5719872,5726299	0.800000
sigmoid_colon_male_adult_54_years	chr1	19344373	19344401	19344373	-	RAMPAGE_only	3	5	20	1.833213	3.076103	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.950000
sigmoid_colon_male_adult_54_years	chr8	11795667	11795674	11795673	+	High_confidence	5	5	16	1.466570	3.024397	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	1.000000
sigmoid_colon_male_adult_54_years	chr5	160213723	160213759	160213723	+	High_confidence	3	5	11	1.008267	2.646439	chr5	160213648	160213724	LTR|ERVL-MaLR|MLT1O	+	chr5	160213726	160238716	FABP6|ENST00000523955.5	+	160213726,160228472,160229545,160232097,160234819,160238605	160213819,160228692,160229624,160232273,160234909,160238716	0.909091
sigmoid_colon_male_adult_54_years	chr4	141332616	141332617	141332616	-	High_confidence	55	58	59	5.407978	3.374548	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.983051
sigmoid_colon_male_adult_54_years	chr2	229586868	229586886	229586868	-	High_confidence	3	3	8	0.733285	3.000000	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229546945	229586929	STRG.16052.3	-	229546945,229585857,229586693	229547092,229586024,229586929	0.625000
sigmoid_colon_male_adult_54_years	chr3	135965673	135965762	135965723	+	High_confidence	33	42	234	21.448590	5.790665	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.995726
sigmoid_colon_male_adult_54_years	chr19	571770	571792	571770	-	High_confidence	4	4	9	0.824946	2.503258	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	1.000000
sigmoid_colon_male_adult_54_years	chr1	202551973	202551995	202551973	+	RAMPAGE_only	24	24	74	6.782887	5.091493	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.648649
sigmoid_colon_male_adult_54_years	chr9	130268673	130268702	130268674	+	High_confidence	4	6	20	1.833213	3.246439	chr9	130268629	130268697	LINE|L2|L2b	-	chr9	130268715	130286343	STRG.57083.2	+	130268715,130284602,130285157,130286187	130268731,130284673,130285316,130286343	0.650000
sigmoid_colon_male_adult_54_years	chr7	102822456	102822470	102822469	-	RAMPAGE_only	4	5	8	0.733285	2.521641	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.750000
sigmoid_colon_male_adult_54_years	chr7	134432378	134432393	134432378	-	High_confidence	4	5	9	0.824946	2.503258	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.777778
sigmoid_colon_male_adult_54_years	chr2	48479481	48479482	48479481	+	RAMPAGE_only	12	13	17	1.558231	3.375000	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48440796	48515386	PPP1R21|ENST00000294952.12	+	48440796,48451007,48454594,48458125,48459753,48460094,48461137,48464936,48465492,48471086,48471278,48474682,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48441010,48451076,48454741,48458227,48459918,48460153,48461232,48464989,48465642,48471188,48471367,48474819,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515386	0.941176
sigmoid_colon_male_adult_54_years	chr1	95042538	95042552	95042538	-	RAMPAGE_only	4	5	9	0.824946	2.503258	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.555556
sigmoid_colon_male_adult_54_years	chr15	80059915	80059933	80059918	+	High_confidence	119	145	282	25.848301	5.139906	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.989362
sigmoid_colon_male_adult_54_years	chr19	36850360	36850377	36850376	+	High_confidence	5	5	12	1.099928	3.022055	chr19	36850362	36850429	LTR|ERV1|MER67D	-	chr19	36850360	36879572	ZNF345|ENST00000589046.1	+	36850360,36851727,36876784	36850515,36851904,36879572	0.666667
sigmoid_colon_male_adult_54_years	chr11	111985316	111985317	111985316	+	RAMPAGE_only	4	4	7	0.641624	2.521641	chr11	111985362	111985466	LINE|L2|L2	+	chr11	111982216	112021055	DIXDC1|ENST00000618522.4	+	111982216,111985231,111986870,111989004,111992414,111992950,111993495,111993668,111995018,111995402,111996079,112016690,112017776,112018955	111982487,111985321,111986924,111989055,111992519,111993004,111993588,111993740,111995108,111995564,111996146,112016796,112017885,112021055	0.857143
sigmoid_colon_male_adult_54_years	chr9	127543805	127543806	127543805	-	RAMPAGE_only	8	8	11	1.008267	2.921928	chr9	127543678	127543822	LINE|L2|L2c	+	chr9	127507171	127568953	FAM129B|ENST00000468379.1	-	127507171,127507866,127525057,127527193,127531647,127568819	127507431,127507934,127525163,127527322,127531778,127568953	0.636364
sigmoid_colon_male_adult_54_years	chr20	25296857	25296916	25296873	+	RAMPAGE_only	9	9	25	2.291516	3.970176	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	0.960000
sigmoid_colon_male_adult_54_years	chr4	139509387	139509515	139509453	-	RAMPAGE_only	6	6	34	3.116462	3.878068	chr4	139509339	139509538	DNA|hAT-Charlie|Charlie30a	-	chr4	139506037	139556769	SETD7|NM_030648.3	-	139506037,139517884,139520276,139523353,139529030,139533164,139546919,139556097	139511843,139518042,139520394,139523435,139529220,139533366,139547049,139556769	1.000000
sigmoid_colon_male_adult_54_years	chr7	154928503	154928504	154928503	+	High_confidence	19	19	24	2.199855	3.754442	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.833333
sigmoid_colon_male_adult_54_years	chr19	48868595	48868631	48868610	-	High_confidence	128	145	734	67.278911	7.183414	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48861623	48868622	STRG.90682.1	-	48861623,48865502,48867536,48868082	48861692,48865610,48867626,48868622	0.985014
sigmoid_colon_male_adult_54_years	chr11	64242530	64242547	64242546	+	High_confidence	10	10	20	1.833213	2.941446	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
sigmoid_colon_male_adult_54_years	chr4	5813676	5813723	5813676	+	RAMPAGE_only	14	16	65	5.957942	4.792889	chr4	5813642	5813697	LINE|CR1|L3	+	chr4	5711376	5828277	STRG.24461.1	+	5711376,5719247,5729306,5731424,5733350,5741715,5745203,5748147,5752835,5753784,5756263,5783551,5793607,5797021,5798585,5801949,5804729,5808200,5809517,5810338,5810952,5818210,5820401	5711554,5719373,5729390,5731657,5733435,5741814,5745341,5748306,5753052,5753933,5756362,5783764,5793717,5797232,5798792,5802094,5804841,5808327,5809611,5810450,5814162,5818254,5828277	0.523077
sigmoid_colon_male_adult_54_years	chr10	98702786	98702807	98702806	-	RAMPAGE_only	8	9	29	2.658159	4.073330	chr10	98701674	98705934	LINE|L1|L1PA10	+	chr10	98457076	98744071	HPSE2|ENST00000404542.5	-	98457076,98482635,98490050,98614903,98620601,98641846,98693899,98721656,98743882	98459739,98482782,98490196,98615018,98620708,98641940,98693947,98721828,98744071	0.931034
sigmoid_colon_male_adult_54_years	chr2	217937254	217937255	217937254	-	High_confidence	7	7	9	0.824946	2.750000	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.666667
sigmoid_colon_male_adult_54_years	chr11	123061128	123061328	123061256	-	High_confidence	20	24	114	10.449313	5.229057	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.964912
sigmoid_colon_male_adult_54_years	chr22	36471196	36471236	36471211	+	High_confidence	43	45	125	11.457580	5.287764	chr22	36471205	36471377	LTR|ERVL|LTR86A2	+	chr22	36471218	36472523	STRG.95670.1	+	36471218	36472523	0.928000
sigmoid_colon_male_adult_54_years	chr2	48479384	48479385	48479384	+	RAMPAGE_only	11	11	14	1.283249	3.378783	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48471310	48498501	PPP1R21|ENST00000455978.1	+	48471310,48474682,48479483,48479923,48486630,48491017,48495678,48498492	48471367,48474819,48479556,48480016,48486758,48491170,48495771,48498501	0.785714
sigmoid_colon_male_adult_54_years	chr8	32927976	32927984	32927983	+	RAMPAGE_only	6	6	17	1.558231	3.454822	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.823529
sigmoid_colon_male_adult_54_years	chr6	31400605	31400618	31400617	-	High_confidence	6	6	23	2.108195	2.908448	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31399599	31400607	STRG.37619.1	-	31399599	31400607	0.869565
sigmoid_colon_male_adult_54_years	chr7	101217578	101217595	101217594	-	High_confidence	5	6	13	1.191588	3.022055	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.923077
sigmoid_colon_male_adult_54_years	chr16	20676161	20676202	20676161	-	High_confidence	5	5	12	1.099928	3.418296	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	1.000000
sigmoid_colon_male_adult_54_years	chr6	130894344	130894394	130894344	-	RAMPAGE_only	4	4	14	1.283249	3.235926	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	0.857143
sigmoid_colon_male_adult_54_years	chr2	10844364	10844396	10844373	+	High_confidence	7	7	32	2.933141	3.788910	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10844359	10885113	STRG.8815.1	+	10844359,10884833	10844505,10885113	0.562500
sigmoid_colon_male_adult_54_years	chr5	157383551	157383563	157383562	-	RAMPAGE_only	6	6	12	1.099928	3.095795	chr5	157383393	157383567	SINE|MIR|MIR3	-	chr5	157360378	157385048	STRG.35445.3	-	157360378,157364525,157376381	157363204,157366704,157385048	0.833333
sigmoid_colon_male_adult_54_years	chr15	65244452	65244455	65244454	-	RAMPAGE_only	6	8	11	1.008267	2.646439	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.818182
sigmoid_colon_male_adult_54_years	chr7	158863386	158863410	158863400	+	RAMPAGE_only	6	6	20	1.833213	3.821928	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.850000
sigmoid_colon_male_adult_54_years	chr12	93735689	93735729	93735689	-	RAMPAGE_only	3	3	11	1.008267	2.913977	chr12	93735619	93735742	SINE|Alu|AluJr	+	chr12	93707790	93737823	LOC101928731|NR_110092.1	-	93707790,93735564,93737698	93709083,93735733,93737823	1.000000
sigmoid_colon_male_adult_54_years	chr11	64226142	64226180	64226142	-	High_confidence	63	66	326	29.881369	6.670069	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64224202	64226148	TRPT1|ENST00000545812.1	-	64224202,64224284,64224542,64224794,64225498,64225785,64226049	64224210,64224341,64224717,64224970,64225580,64225869,64226148	0.585890
sigmoid_colon_male_adult_54_years	chr3	114624940	114625007	114625006	-	High_confidence	33	39	193	17.690504	5.213632	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.844560
sigmoid_colon_male_adult_54_years	chr14	73567613	73567641	73567616	+	High_confidence	49	50	127	11.640901	5.384497	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.984252
sigmoid_colon_male_adult_54_years	chr3	169812903	169812904	169812903	-	High_confidence	5	6	7	0.641624	2.521641	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	1.000000
sigmoid_colon_male_adult_54_years	chr19	11539669	11539706	11539705	+	High_confidence	14	14	40	3.666426	4.284901	chr19	11539660	11539789	SINE|MIR|MIRb	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	0.975000
sigmoid_colon_male_adult_54_years	chr1	153967486	153967499	153967486	+	High_confidence	8	10	19	1.741552	2.800045	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.947368
sigmoid_colon_male_adult_54_years	chr9	39809843	39809874	39809843	-	High_confidence	5	5	24	2.199855	3.407268	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803603	39810013	STRG.54147.4	-	39803603,39809485	39803859,39810013	0.708333
sigmoid_colon_male_adult_54_years	chr12	103777101	103777418	103777288	-	RAMPAGE_only	74	75	1069	97.985226	4.172150	chr12	103777216	103777295	DNA|TcMar-Tigger|Tigger19b	+	chr12	103772309	103793472	STRG.71051.7	-	103772309,103780299,103785334,103788837,103793163,103793409	103778081,103780364,103787527,103788919,103793265,103793472	0.995323
sigmoid_colon_male_adult_54_years	chr8	27977120	27977126	27977125	-	RAMPAGE_only	34	43	73	6.691227	5.081690	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.794521
sigmoid_colon_male_adult_54_years	chr9	129489125	129489126	129489125	+	High_confidence	6	8	8	0.733285	2.750000	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.750000
sigmoid_colon_male_adult_54_years	chr19	45524101	45524131	45524130	+	RAMPAGE_only	5	5	11	1.008267	2.663533	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	1.000000
sigmoid_colon_male_adult_54_years	chr12	10363951	10363970	10363969	+	High_confidence	4	5	11	1.008267	2.921928	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.909091
sigmoid_colon_male_adult_54_years	chr12	15001766	15001811	15001807	+	High_confidence	21	22	50	4.583032	4.341964	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.860000
sigmoid_colon_male_adult_54_years	chr1	192986893	192986931	192986909	-	RAMPAGE_only	4	6	16	1.466570	3.189898	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192957214	192961790	STRG.6407.1	-	192957214,192961704	192957422,192961790	0.562500
sigmoid_colon_male_adult_54_years	chr11	44564428	44564429	44564428	+	High_confidence	4	6	7	0.641624	2.584963	chr11	44564373	44564477	SINE|MIR|MIRc	+	chr11	44564426	44615295	CD82|ENST00000526958.5	+	44564426,44587474,44594642,44600157,44605057,44605354,44615271	44564502,44587556,44594725,44600230,44605182,44605429,44615295	0.857143
sigmoid_colon_male_adult_54_years	chr5	140700445	140700452	140700445	+	High_confidence	796	931	1655	151.698362	4.766266	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.982477
sigmoid_colon_male_adult_54_years	chr17	59620042	59620074	59620073	+	High_confidence	5	5	20	1.833213	3.003702	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.900000
sigmoid_colon_male_adult_54_years	chr17	2975600	2975601	2975600	+	RAMPAGE_only	4	4	7	0.641624	2.521641	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2853965	3037707	STRG.83667.1	+	2853965,2905283,2957758,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2854102,2905368,2957794,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037707	0.857143
sigmoid_colon_male_adult_54_years	chr19	5680240	5680261	5680251	-	High_confidence	7	7	22	2.016534	3.689704	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.954545
sigmoid_colon_male_adult_54_years	chr16	15710479	15710514	15710513	-	High_confidence	6	7	18	1.649892	3.852169	chr16	15710240	15710545	SINE|Alu|AluSc	+	chr16	15703740	15711270	MYH11|ENST00000573908.1	-	15703740,15711112	15704123,15711270	0.944444
sigmoid_colon_male_adult_54_years	chr2	217937115	217937162	217937115	-	RAMPAGE_only	19	20	71	6.507906	5.059831	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217803445	217944005	TNS1|ENST00000611415.4	-	217803445,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217830366,217831454,217835090,217836014,217847509,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217906334,217907209,217920194,217943864	217804603,217808107,217808671,217809991,217810319,217812445,217813304,217813816,217814998,217818759,217821938,217830390,217831547,217835166,217836211,217849087,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217906385,217907251,217920236,217944005	0.901408
sigmoid_colon_male_adult_54_years	chr6	2881285	2881286	2881285	-	High_confidence	21	21	21	1.924873	3.653757	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
sigmoid_colon_male_adult_54_years	chr4	158173024	158173025	158173024	-	High_confidence	66	66	81	7.424512	5.101220	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158128026	158173043	STRG.29535.5	-	158128026,158155610,158170465,158172872	158131012,158155825,158171599,158173043	0.938272
sigmoid_colon_male_adult_54_years	chr6	31587002	31587010	31587009	+	High_confidence	3	5	6	0.549964	2.584963	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	1.000000
sigmoid_colon_male_adult_54_years	chr6	79631256	79631329	79631328	+	High_confidence	36	42	163	14.940685	5.788103	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.993865
sigmoid_colon_male_adult_54_years	chr15	62894582	62894597	62894582	+	RAMPAGE_only	4	4	9	0.824946	2.500000	chr15	62894534	62894826	SINE|Alu|AluSx3	+	chr15	62895811	62899543	AC103740.2|ENST00000557900.1	+	62895811,62898650	62896143,62899543	0.888889
sigmoid_colon_male_adult_54_years	chr9	87874133	87874184	87874183	+	High_confidence	10	11	31	2.841480	3.250078	chr9	87874022	87874740	LTR|ERV1|LTR76	+	chr9	87874072	87878813	STRG.55191.1	+	87874072,87878561	87874241,87878813	0.903226
sigmoid_colon_male_adult_54_years	chr20	21160831	21160834	21160833	+	RAMPAGE_only	16	26	26	2.383177	3.854286	chr20	21160661	21161021	LTR|ERVL-MaLR|MLT1A0	+	chr20	21145588	21246622	KIZ|ENST00000619179.4	+	21145588,21161870,21162849,21205490,21214534,21229010,21232733,21244244,21246478	21145654,21162507,21163159,21205584,21214700,21229115,21232830,21244288,21246622	0.961538
sigmoid_colon_male_adult_54_years	chr1	184811034	184811049	184811034	-	RAMPAGE_only	3	3	9	0.824946	2.500000	chr1	184810857	184811494	LTR|ERV1|MER57-int	+	chr1	184794117	184868041	FAM129A|ENST00000487074.5	-	184794117,184798078,184803584,184805945,184808073,184818637,184823166,184831846,184867863	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184831962,184868041	0.555556
sigmoid_colon_male_adult_54_years	chr16	81664321	81664344	81664343	+	RAMPAGE_only	5	5	17	1.558231	2.822182	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81651190	81707063	STRG.83304.2	+	81651190,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013	81651427,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707063	1.000000
sigmoid_colon_male_adult_54_years	chr1	25820176	25820203	25820202	+	High_confidence	3	5	14	1.283249	3.093069	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.857143
sigmoid_colon_male_adult_54_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	15	15	15	1.374910	3.106891	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
sigmoid_colon_male_adult_54_years	chr19	11196051	11196075	11196072	-	High_confidence	7	10	20	1.833213	3.508695	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.850000
sigmoid_colon_male_adult_54_years	chr20	3795750	3795789	3795780	+	High_confidence	4	4	19	1.741552	3.892407	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
sigmoid_colon_male_adult_54_years	chr2	61971447	61971460	61971459	+	RAMPAGE_only	7	7	13	1.191588	2.584963	chr2	61971115	61971625	LTR|ERV1|LTR10D	-	chr2	61905659	62156791	STRG.10490.1	+	61905659,62000700,62135830,62155745	61905858,62000982,62135979,62156791	0.538462
sigmoid_colon_male_adult_54_years	chr9	111284863	111284875	111284874	-	High_confidence	5	5	10	0.916606	2.921928	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.900000
sigmoid_colon_male_adult_54_years	chr8	56559496	56559497	56559496	-	High_confidence	16	16	17	1.558231	3.375000	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.647059
sigmoid_colon_male_adult_54_years	chr1	77227398	77227399	77227398	+	RAMPAGE_only	22	24	25	2.291516	3.704987	chr1	77227275	77228089	LINE|L2|L2b	-	chr1	77888512	77933384	NEXN|ENST00000401035.7	+	77888512,77916054,77917959,77918124,77925187,77926413,77926715,77929315,77933281	77888759,77916133,77918038,77918273,77925229,77926611,77926892,77929504,77933384	0.960000
sigmoid_colon_male_adult_54_years	chr15	65642912	65642917	65642912	+	High_confidence	2	2	7	0.641624	2.521641	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	1.000000
sigmoid_colon_male_adult_54_years	chr9	122164574	122164597	122164595	+	High_confidence	211	294	589	53.988118	6.449556	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122164614	122200083	STRG.56707.4	+	122164614,122166767,122174495,122199884	122164647,122166915,122174627,122200083	0.930390
sigmoid_colon_male_adult_54_years	chr8	53523936	53523964	53523963	-	High_confidence	12	14	25	2.291516	4.133661	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
sigmoid_colon_male_adult_54_years	chr2	200889279	200889304	200889293	-	High_confidence	10	10	33	3.024801	4.304229	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.606061
sigmoid_colon_male_adult_54_years	chr1	21833817	21833855	21833817	-	High_confidence	3	4	12	1.099928	2.913977	chr1	21833729	21833783	LINE|L2|L2c	-	chr1	21829992	21833577	HSPG2|ENST00000635682.1	-	21829992,21830981,21831214,21831462,21831651,21832494,21832874,21833267,21833466	21830091,21831090,21831324,21831562,21831796,21832606,21832892,21833384,21833577	0.916667
sigmoid_colon_male_adult_54_years	chr3	141429538	141429539	141429538	+	RAMPAGE_only	8	10	12	1.099928	2.913977	chr3	141429492	141430039	LINE|L2|L2a	-	chr3	141426126	141443020	ZBTB38|ENST00000510726.1	+	141426126,141427633,141442388	141426165,141427821,141443020	0.833333
sigmoid_colon_male_adult_54_years	chr10	79435785	79435818	79435785	-	RAMPAGE_only	5	5	12	1.099928	2.688722	chr10	79435626	79435755	SINE|MIR|MIR3	-	chr10	79386036	79444219	ZCCHC24|ENST00000372333.3	-	79386036,79394275,79432557,79444101	79386458,79394440,79432758,79444219	1.000000
sigmoid_colon_male_adult_54_years	chr10	45000503	45000513	45000503	+	High_confidence	3	3	9	0.824946	2.947703	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
sigmoid_colon_male_adult_54_years	chr5	147382877	147382900	147382888	+	High_confidence	12	16	40	3.666426	4.041061	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.875000
sigmoid_colon_male_adult_54_years	chrX	53585017	53585056	53585017	-	RAMPAGE_only	5	5	12	1.099928	3.084963	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.916667
sigmoid_colon_male_adult_54_years	chr17	59619894	59619923	59619894	+	High_confidence	332	380	990	90.744035	5.940917	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.970707
sigmoid_colon_male_adult_54_years	chr1	150457331	150457366	150457331	+	RAMPAGE_only	4	4	11	1.008267	2.913977	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150364710	150473556	RPRD2|ENST00000369068.4	+	150364710,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150364919,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	1.000000
sigmoid_colon_male_adult_54_years	chr18	7946878	7946898	7946878	+	High_confidence	64	64	140	12.832490	5.060585	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.885714
sigmoid_colon_male_adult_54_years	chr7	107580245	107580267	107580264	+	High_confidence	494	496	2512	230.251531	6.422156	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.969347
sigmoid_colon_male_adult_54_years	chr20	44532569	44532570	44532569	+	High_confidence	14	16	16	1.466570	3.202820	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	1.000000
sigmoid_colon_male_adult_54_years	chr4	119034325	119034390	119034325	+	RAMPAGE_only	17	19	39	3.574765	4.682587	chr4	119034263	119034446	SINE|tRNA|LFSINE_Vert	+	chr4	119023470	119037447	STRG.28452.7	+	119023470,119029844	119027438,119037447	1.000000
sigmoid_colon_male_adult_54_years	chr8	53523862	53523902	53523862	-	High_confidence	10	10	47	4.308050	4.612788	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
sigmoid_colon_male_adult_54_years	chr19	3669636	3669647	3669646	+	RAMPAGE_only	4	4	11	1.008267	3.121928	chr19	3669547	3669685	SINE|MIR|MIR3	-	chr19	3672581	3674295	AC004637.1|ENST00000586675.1	+	3672581,3673739,3674003	3672614,3673896,3674295	0.636364
sigmoid_colon_male_adult_54_years	chr16	15740077	15740182	15740077	-	RAMPAGE_only	159	162	1237	113.384214	7.842088	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.986257
sigmoid_colon_male_adult_54_years	chr12	109179243	109179289	109179288	+	RAMPAGE_only	3	3	15	1.374910	3.240224	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109139396	109260147	ACACB|ENST00000377854.9	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260147	1.000000
sigmoid_colon_male_adult_54_years	chrX	11351675	11351676	11351675	-	RAMPAGE_only	24	24	28	2.566498	3.815072	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.714286
sigmoid_colon_male_adult_54_years	chr5	77139259	77139274	77139273	+	High_confidence	6	7	13	1.191588	2.815072	chr5	77139300	77139468	LTR|ERVL-MaLR|MLT1H	+	chr5	77139248	77148523	ZBED3-AS1|ENST00000515356.2	+	77139248,77146116,77147651	77139317,77147162,77148523	0.538462
sigmoid_colon_male_adult_54_years	chr15	98017724	98017790	98017769	-	High_confidence	77	79	286	26.214943	7.063535	chr15	98016264	98017842	LINE|L2|L2a	+	chr15	97960255	98017769	STRG.80960.9	-	97960255,98016428	97997372,98017769	0.993007
sigmoid_colon_male_adult_54_years	chr1	19980415	19980434	19980419	-	High_confidence	4	4	12	1.099928	3.027169	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975437	19980416	PLA2G2A|ENST00000375111.7	-	19975437,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979690,19980416	0.916667
sigmoid_colon_male_adult_54_years	chr20	50267474	50267478	50267477	+	High_confidence	4	5	11	1.008267	3.095795	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.909091
sigmoid_colon_male_adult_54_years	chr2	177837102	177837117	177837116	-	High_confidence	28	29	52	4.766353	4.589393	chr2	177837020	177837462	LTR|ERV1|HUERS-P3b-int	+	chr2	177623251	177837130	STRG.14042.3	-	177623251,177663865,177669492,177675454,177680825,177697331,177701120,177711768,177727657,177728025,177769322,177816828,177817857,177820219,177836956	177629562,177663949,177669567,177675518,177680903,177697432,177701211,177711878,177727765,177728172,177769373,177816921,177817925,177820295,177837130	0.923077
sigmoid_colon_male_adult_54_years	chr14	51599952	51600012	51599952	-	High_confidence	5	5	38	3.483104	4.346226	chr14	51599913	51599958	SINE|MIR|MIR3	+	chr14	51546628	51599952	FRMD6-AS2|NR_047477.2	-	51546628,51547706,51584165,51599826	51546820,51547883,51584283,51599952	0.763158
sigmoid_colon_male_adult_54_years	chr4	176277365	176277410	176277409	-	High_confidence	11	11	22	2.016534	3.641250	chr4	176277280	176277397	LINE|L2|L2c	-	chr4	176221517	176277571	STRG.30019.3	-	176221517,176222312,176225261,176268912,176275795,176277228	176221600,176222420,176225341,176269197,176275906,176277571	0.909091
sigmoid_colon_male_adult_54_years	chr2	177837061	177837062	177837061	-	High_confidence	9	9	11	1.008267	3.459432	chr2	177837020	177837462	LTR|ERV1|HUERS-P3b-int	+	chr2	177623251	177837130	STRG.14042.3	-	177623251,177663865,177669492,177675454,177680825,177697331,177701120,177711768,177727657,177728025,177769322,177816828,177817857,177820219,177836956	177629562,177663949,177669567,177675518,177680903,177697432,177701211,177711878,177727765,177728172,177769373,177816921,177817925,177820295,177837130	0.727273
sigmoid_colon_male_adult_54_years	chr21	36005319	36005320	36005319	+	High_confidence	30	30	43	3.941408	4.492926	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.953488
sigmoid_colon_male_adult_54_years	chr7	87040212	87040223	87040222	-	High_confidence	9	9	30	2.749819	4.281728	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86964840	87040319	STRG.46112.5	-	86964840,87039755	86965024,87040319	0.633333
sigmoid_colon_male_adult_54_years	chr13	46711794	46711813	46711812	+	RAMPAGE_only	5	5	12	1.099928	2.688722	chr13	46711708	46711858	LINE|L1|X9_LINE	-	chr13	46553259	46742733	LRCH1|ENST00000389797.7	+	46553259,46650200,46669029,46681740,46685904,46687851,46689132,46692535,46694892,46699335,46701120,46705067,46705267,46711790,46712524,46715559,46723220,46728846,46733920,46741641	46553703,46650345,46669156,46681846,46686041,46687979,46689196,46692641,46695017,46699403,46701207,46705157,46705304,46711844,46712597,46715664,46723330,46728984,46733998,46742733	0.833333
sigmoid_colon_male_adult_54_years	chr1	6208681	6208682	6208681	-	High_confidence	98	98	98	8.982743	3.739395	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.969388
sigmoid_colon_male_adult_54_years	chr8	39083065	39083066	39083065	+	RAMPAGE_only	13	13	14	1.283249	2.873141	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.500000
sigmoid_colon_male_adult_54_years	chr6	43013392	43013393	43013392	-	High_confidence	10	10	12	1.099928	3.251629	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
sigmoid_colon_male_adult_54_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	4	5	7	0.641624	2.521641	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.714286
sigmoid_colon_male_adult_54_years	chr16	15798664	15798675	15798664	-	RAMPAGE_only	489	574	1054	96.610316	6.790891	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.953510
sigmoid_colon_male_adult_54_years	chr9	121281850	121281851	121281850	+	RAMPAGE_only	7	9	11	1.008267	3.095795	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.909091
sigmoid_colon_male_adult_54_years	chr2	177836663	177836705	177836674	+	High_confidence	10	10	42	3.849747	4.454636	chr2	177835498	177837020	LTR|ERV1|LTR12C	+	chr2	177836586	177841747	STRG.14041.1	+	177836586,177838782,177840204,177841219	177837127,177838870,177840399,177841747	0.976190
sigmoid_colon_male_adult_54_years	chr19	48637362	48637379	48637367	-	High_confidence	13	13	45	4.124729	4.167768	chr19	48637310	48637367	LINE|L1|X9_LINE	+	chr19	48633085	48637363	DBP|ENST00000601104.1	-	48633085,48635579,48636855	48633655,48635990,48637363	0.977778
sigmoid_colon_male_adult_54_years	chr16	27333283	27333288	27333283	+	RAMPAGE_only	23	23	41	3.758086	4.229985	chr16	27333168	27333399	LINE|CR1|L3	-	chr16	27341288	27364777	IL4R|ENST00000170630.6	+	27341288,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27364777	0.731707
sigmoid_colon_male_adult_54_years	chr10	28335269	28335306	28335295	-	High_confidence	95	110	473	43.355483	4.964709	chr10	28335237	28335330	SINE|Alu|AluYc	-	chr10	28050992	28335313	STRG.58193.2	-	28050992,28056479,28058494,28059649,28069771,28089670,28119650,28120193,28120593,28124030,28125009,28131559,28147482,28149981,28202152,28238567,28334869	28054244,28056623,28058603,28059743,28069852,28089841,28119715,28120390,28120668,28124116,28125091,28131691,28147563,28150059,28202271,28238735,28335313	0.989429
sigmoid_colon_male_adult_54_years	chr2	96638011	96638032	96638031	-	High_confidence	5	6	17	1.558231	3.381580	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.705882
sigmoid_colon_male_adult_54_years	chr9	39810033	39810084	39810033	-	High_confidence	8	8	48	4.399711	4.399674	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803603	39810013	STRG.54147.4	-	39803603,39809485	39803859,39810013	0.895833
sigmoid_colon_male_adult_54_years	chr5	109383459	109383504	109383497	-	High_confidence	9	9	37	3.391444	4.343289	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.945946
sigmoid_colon_male_adult_54_years	chrX	5726324	5726325	5726324	-	High_confidence	27	27	27	2.474837	3.436012	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.851852
sigmoid_colon_male_adult_54_years	chr12	45292684	45292701	45292685	+	High_confidence	3	5	15	1.374910	3.039149	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.800000
sigmoid_colon_male_adult_54_years	chr17	79658909	79658982	79658954	-	RAMPAGE_only	9	9	57	5.224657	4.882811	chr17	79658911	79659280	LTR|ERVL-MaLR|MLT1I	-	chr17	79230749	79646340	STRG.86467.6	-	79230749,79307723,79482453,79644136,79646195	79235805,79307824,79482598,79644242,79646340	0.561404
sigmoid_colon_male_adult_54_years	chr12	91179383	91179384	91179383	-	High_confidence	8	8	12	1.099928	2.913977	chr12	91179305	91179397	SINE|MIR|MIRb	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.916667
sigmoid_colon_male_adult_54_years	chr12	55516318	55516319	55516318	+	RAMPAGE_only	8	8	8	0.733285	3.000000	chr12	55515725	55517184	LINE|L1|L1M1	+	chr12	56158160	56161574	MYL6|ENST00000550697.5	+	56158160,56158683,56159586,56159974,56160242,56160625,56161386	56158404,56158711,56159730,56160148,56160320,56160670,56161574	0.875000
sigmoid_colon_male_adult_54_years	chr1	21876230	21876248	21876230	-	RAMPAGE_only	3	3	10	0.916606	2.725481	chr1	21876092	21876241	LINE|L2|L2c	+	chr1	21822244	21896271	STRG.808.2	-	21822244,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21888667,21889980,21890426,21890584,21895921,21896174	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21888718,21890141,21890485,21890694,21895966,21896271	0.900000
sigmoid_colon_male_adult_54_years	chr8	143018394	143018444	143018394	-	High_confidence	10	10	60	5.499638	4.787233	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.866667
sigmoid_colon_male_adult_54_years	chr1	147173166	147173202	147173166	+	High_confidence	1	1	7	0.641624	2.584963	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.714286
sigmoid_colon_male_adult_54_years	chr1	1655378	1655410	1655409	-	RAMPAGE_only	6	6	18	1.649892	3.350209	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.500000
sigmoid_colon_male_adult_54_years	chr4	2867814	2867851	2867850	+	High_confidence	11	12	37	3.391444	3.959057	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
sigmoid_colon_male_adult_54_years	chr16	20674497	20674498	20674497	+	High_confidence	30	30	32	2.933141	3.539572	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.906250
sigmoid_colon_male_adult_54_years	chr19	35115804	35115845	35115822	+	High_confidence	9	13	61	5.591299	4.996404	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_021910.2	+	35115827,35116263,35119167,35119362,35121077,35121221,35122764,35123270,35123440	35115959,35116359,35119251,35119416,35121110,35121245,35122954,35123308,35124324	0.901639
sigmoid_colon_male_adult_54_years	chr15	74174527	74174572	74174558	+	High_confidence	4	4	20	1.833213	3.621928	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	1.000000
sigmoid_colon_male_adult_54_years	chr1	156252930	156252931	156252930	-	RAMPAGE_only	6	6	8	0.733285	2.500000	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156250032	156251380	SMG5|ENST00000476954.1	-	156250032,156250857	156250670,156251380	0.625000
sigmoid_colon_male_adult_54_years	chr3	188153195	188153247	188153209	+	High_confidence	6	6	28	2.566498	4.182006	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.928571
sigmoid_colon_male_adult_54_years	chr12	9065162	9065174	9065173	+	High_confidence	21	21	78	7.149530	5.216376	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.858974
sigmoid_colon_male_adult_54_years	chr7	137254877	137254969	137254968	-	RAMPAGE_only	8	8	34	3.116462	4.150159	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.970588
sigmoid_colon_male_adult_54_years	chr2	182928788	182928798	182928788	-	RAMPAGE_only	5	5	9	0.824946	2.500000	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.666667
sigmoid_colon_male_adult_54_years	chr2	201790489	201790511	201790489	+	High_confidence	3	3	8	0.733285	2.750000	chr2	201790433	201790802	LINE|L2|L2-3_Crp	-	chr2	201790612	201807572	STRG.15363.1	+	201790612,201806428,201807493	201790660,201806787,201807572	0.500000
sigmoid_colon_male_adult_54_years	chr16	2757847	2757899	2757847	+	High_confidence	6	6	20	1.833213	3.821928	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.850000
sigmoid_colon_male_adult_54_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	16	16	19	1.741552	3.616349	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
sigmoid_colon_male_adult_54_years	chr20	44696111	44696112	44696111	-	High_confidence	11	12	12	1.099928	3.277613	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.833333
sigmoid_colon_male_adult_54_years	chr7	116239250	116239253	116239250	-	High_confidence	47	60	105	9.624367	5.716048	chr7	116238900	116239327	LTR|ERVL-MaLR|MLT1E2	-	chr7	116237928	116239249	AC073130.2|ENST00000456289.5	-	116237928,116239014	116238276,116239249	0.647619
sigmoid_colon_male_adult_54_years	chr9	18702070	18702071	18702070	-	RAMPAGE_only	14	14	16	1.466570	3.000000	chr9	18701896	18702263	LTR|ERVL-MaLR|THE1B	-	chr9	18657352	18670200	STRG.53668.1	-	18657352,18670172	18657739,18670200	0.500000
SJCRH30	chr8	99893444	99893492	99893444	-	High_confidence	4	5	27	1.496438	3.513785	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	1.000000
SJCRH30	chr7	92906204	92906218	92906215	+	RAMPAGE_only	8	8	22	1.219320	3.508695	chr7	92906034	92906414	LTR|ERVL-MaLR|MSTA	+	chr7	92854908	92917174	AC002454.1|ENST00000419668.1	+	92854908,92855683,92916836	92854953,92855827,92917174	0.818182
SJCRH30	chr7	158863388	158863409	158863389	+	RAMPAGE_only	5	7	15	0.831354	3.906891	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	1.000000
SJCRH30	chr15	71275816	71275817	71275816	+	RAMPAGE_only	109	121	136	7.537613	6.169024	chr15	71275619	71275998	LTR|ERVL-MaLR|THE1C	+	chr15	71273974	71783383	MSTRG.8743.4	+	71273974,71411686,71660529,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71771063,71777231	71275915,71411823,71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71771208,71783383	0.514706
SJCRH30	chr7	7555306	7555320	7555306	-	RAMPAGE_only	4	4	10	0.554236	2.721928	chr7	7555240	7555694	LTR|ERVL|LTR16A	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	1.000000
SJCRH30	chr22	20371862	20371885	20371882	-	High_confidence	9	10	26	1.441014	3.286790	chr22	20371857	20372041	LTR|ERV1|LTR36	-	chr22	20350577	20372696	USP41|ENST00000486536.6	-	20350577,20363624,20364185,20366566,20367547,20369428,20370119,20372535	20350931,20363674,20364317,20366734,20367643,20369575,20370199,20372696	0.884615
SJCRH30	chr8	102275520	102275525	102275522	-	RAMPAGE_only	3	6	10	0.554236	2.503258	chr8	102275368	102275493	LINE|L1|L1ME3E	-	chr8	102271193	102276820	UBR5|ENST00000521566.1	-	102271193,102272528,102275520,102275707,102276773	102271245,102272772,102275619,102275828,102276820	0.800000
SJCRH30	chr13	37000247	37000261	37000260	-	High_confidence	6	7	11	0.609660	3.095795	chr13	37000063	37000363	SINE|Alu|AluY	+	chr13	36985648	37000261	ALG5|ENST00000496689.1	-	36985648,36989483,36993603,36995424,36999931	36985740,36989576,36993672,36995596,37000261	0.545455
SJCRH30	chr20	8114472	8114541	8114501	+	High_confidence	8	12	43	2.383216	4.693479	chr20	8108866	8114917	LINE|L1|L1PA3	-	chr20	8114506	8658555	PLCB1|ENST00000630495.2	+	8114506,8141870,8150293,8371381,8628293,8646101,8647899,8649373,8657183,8658537	8114573,8141948,8150371,8371450,8628431,8646181,8647953,8649449,8657284,8658555	0.581395
SJCRH30	chr4	170743761	170743777	170743761	-	High_confidence	7	7	29	1.607285	3.633506	chr4	170743427	170744142	LTR|ERV1|MER50	-	chr4	170742468	170743735	LOC100506107|NR_134683.1	-	170742468,170743664	170743028,170743735	1.000000
SJCRH30	chr21	38121468	38121494	38121491	+	High_confidence	16	18	55	3.048299	4.891384	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.927273
SJCRH30	chr4	136921433	136921434	136921433	-	High_confidence	21	23	23	1.274743	3.880180	chr4	136921275	136921628	LTR|ERVL-MaLR|THE1A	-	chr4	136809068	136921382	LINC02511|ENST00000512039.1	-	136809068,136813649,136916174,136921341	136809212,136813731,136916226,136921382	0.782609
SJCRH30	chr4	86453384	86453422	86453384	-	High_confidence	5	5	28	1.551861	4.423252	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015268	86453387	MAPK10|ENST00000641657.1	-	86015268,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453387	0.964286
SJCRH30	chr17	78561120	78561132	78561127	-	RAMPAGE_only	3	4	12	0.665083	3.277613	chr17	78561061	78561150	LTR|ERV1|MER89	+	chr17	78543754	78571322	DNAH17|ENST00000589793.1	-	78543754,78551534,78552696,78558107,78560739,78561714,78566613,78566998,78569165,78569374,78570246,78570947,78571278	78543997,78551638,78552805,78558254,78560935,78561980,78566730,78567166,78569252,78569527,78570372,78571033,78571322	0.833333
SJCRH30	chr10	35412539	35412555	35412546	+	High_confidence	3	3	17	0.942202	3.499228	chr10	35412569	35412888	SINE|Alu|AluSx	+	chr10	35412906	35566285	MSTRG.2856.8	+	35412906,35483403,35501500,35516522,35525963,35529972,35530123,35553018,35566022	35413044,35483478,35501535,35516623,35525999,35530030,35530243,35553185,35566285	1.000000
SJCRH30	chr1	248731095	248731099	248731098	-	RAMPAGE_only	14	14	31	1.718132	3.923231	chr1	248730810	248731492	LTR|ERV1|MER50B	-	chr1	248718648	248745279	LYPD8|ENST00000566597.5	-	248718648,248721269,248745141	248718807,248722205,248745279	0.645161
SJCRH30	chr9	38414523	38414618	38414535	-	High_confidence	21	32	110	6.096598	5.061299	chr9	38414336	38414535	SINE|MIR|MIR3	-	chr9	38406345	38415357	MSTRG.24873.2	-	38406345,38411390,38413236,38414093,38414364	38409217,38411549,38413353,38414203,38415357	0.972727
SJCRH30	chr17	29042869	29042883	29042882	+	High_confidence	5	8	13	0.720507	3.251629	chr17	29042849	29042963	DNA|TcMar?|Eulor8	+	chr17	29042899	29057218	PIPOX|NM_016518.2	+	29042899,29044858,29052919,29053412,29054544,29055062,29055812,29056174	29043339,29045007,29053133,29053595,29054691,29055221,29055888,29057218	0.769231
SJCRH30	chr15	94070550	94070561	94070559	-	High_confidence	7	12	19	1.053049	3.826875	chr15	94070430	94070669	SINE|5S-Deu-L2|AmnSINE1	-	chr15	94064368	94070820	LINC01579|ENST00000555772.1	-	94064368,94066768,94070523	94065292,94066879,94070820	0.789474
SJCRH30	chr12	57935515	57935538	57935528	-	High_confidence	3	3	14	0.775931	2.753434	chr12	57935455	57935567	LINE|L2|L2	+	chr12	57931568	57936059	AC084033.3|ENST00000547492.1	-	57931568,57935469	57931737,57936059	1.000000
SJCRH30	chr7	93591657	93591658	93591657	+	High_confidence	7	7	11	0.609660	3.095795	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591248	93911766	MSTRG.23090.1	+	93591248,93807203,93886505,93906738,93910789	93591771,93821759,93886549,93906842,93911766	0.818182
SJCRH30	chr5	83096152	83096177	83096152	+	RAMPAGE_only	27	36	77	4.267619	4.420618	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	0.961039
SJCRH30	chr5	58937065	58937087	58937077	-	RAMPAGE_only	3	3	8	0.443389	2.807355	chr5	58937065	58937991	LINE|L1|L1M2	-	chr5	58741580	58817099	AC016642.1|ENST00000509476.1	-	58741580,58814659,58815733,58817043	58742000,58814745,58815812,58817099	0.625000
SJCRH30	chr13	32316201	32316229	32316218	+	High_confidence	2	2	8	0.443389	2.521641	chr13	32316137	32316291	DNA|hAT-Charlie|MER3	-	chr13	32316460	32362659	BRCA2|ENST00000614259.1	+	32316460,32319076,32325075,32326100,32326241,32326498,32329442,32330918,32332271,32336264,32344557,32346826,32354860,32356427,32357741,32362514	32316527,32319325,32325184,32326150,32326282,32326613,32329492,32331030,32333387,32341196,32344653,32346896,32355288,32356609,32357929,32362659	0.500000
SJCRH30	chr16	27229197	27229198	27229197	-	RAMPAGE_only	7	7	9	0.498813	2.725481	chr16	27229101	27229466	LINE|L2|L2b	+	chr16	27225024	27268741	NSMCE1|ENST00000565070.5	-	27225024,27225725,27233000,27234187,27235177,27257434,27268705	27225236,27226836,27233147,27234265,27235299,27257581,27268741	0.777778
SJCRH30	chr7	107580242	107580265	107580245	+	High_confidence	390	396	2272	125.922471	6.596084	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.956426
SJCRH30	chr1	159005961	159005962	159005961	+	High_confidence	9	9	13	0.720507	3.026987	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.538462
SJCRH30	chr1	1407824	1407848	1407824	-	High_confidence	3	3	10	0.554236	2.503258	chr1	1407717	1407798	SINE|Alu|AluYh9	-	chr1	1401895	1407313	MRPL20|NM_017971.3	-	1401895,1405808,1406908,1407130	1402256,1405886,1407019,1407313	0.800000
SJCRH30	chr3	169812903	169812904	169812903	-	High_confidence	14	14	15	0.831354	2.556657	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.933333
SJCRH30	chr10	35412753	35412797	35412763	+	High_confidence	5	5	26	1.441014	3.454987	chr10	35412569	35412888	SINE|Alu|AluSx	+	chr10	35412906	35566285	MSTRG.2856.8	+	35412906,35483403,35501500,35516522,35525963,35529972,35530123,35553018,35566022	35413044,35483478,35501535,35516623,35525999,35530030,35530243,35553185,35566285	0.923077
SJCRH30	chr17	29044111	29044224	29044189	+	High_confidence	9	10	57	3.159146	4.999838	chr17	29044221	29044306	SINE|MIR|MIR3	+	chr17	29044217	29053592	PIPOX|ENST00000466889.5	+	29044217,29044858,29052919,29053412	29044394,29045007,29053133,29053592	0.578947
SJCRH30	chr19	3062939	3062983	3062977	-	High_confidence	5	5	33	1.828980	3.957294	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	1.000000
SJCRH30	chr16	11587465	11587469	11587465	-	High_confidence	6	6	14	0.775931	3.235926	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
SJCRH30	chr19	51354770	51354789	51354770	-	High_confidence	2	2	9	0.498813	2.725481	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
SJCRH30	chr12	57942349	57942380	57942379	-	RAMPAGE_only	4	5	16	0.886778	3.640224	chr12	57942343	57942403	DNA|hAT-Charlie|Charlie4z	+	chr12	57931587	57936175	AC084033.3|ENST00000546580.1	-	57931587,57935469,57935838	57931737,57935553,57936175	0.750000
SJCRH30	chr12	52201678	52201715	52201714	+	RAMPAGE_only	11	11	69	3.824230	4.521569	chr12	52201520	52201894	LTR|ERVL-MaLR|MLT1D	+	chr12	52210929	52223813	LINC00592|NR_027358.1	+	52210929,52212043,52212598,52221976,52223445	52211020,52212156,52213027,52222028,52223813	1.000000
SJCRH30	chr4	5525125	5525187	5525181	+	High_confidence	9	10	50	2.771181	4.751272	chr4	5524701	5525232	LTR|ERV1|MER66C	-	chr4	5525155	5527801	LINC01587|ENST00000623565.3	+	5525155,5526215,5527387	5525496,5526333,5527801	0.940000
SJCRH30	chr16	15510534	15510550	15510549	+	RAMPAGE_only	10	12	25	1.385591	3.625815	chr16	15510508	15510663	SINE|MIR|MIR	-	chr16	15515304	15587964	C16orf45|ENST00000564389.5	+	15515304,15567982,15581216,15583155,15587495	15515428,15568056,15581331,15583238,15587964	0.800000
SJCRH30	chr12	126772245	126772259	126772258	-	High_confidence	4	4	10	0.554236	3.121928	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126730700	126772262	LINC00944|NR_033878.1	-	126730700,126732342,126746260,126747930,126772078	126730803,126732407,126746332,126748127,126772262	0.800000
SJCRH30	chr1	226542738	226542739	226542738	-	High_confidence	404	423	573	31.757736	6.415794	chr1	226542461	226543018	LTR|ERVL|LTR66	-	chr1	226532084	226542738	MSTRG.2437.2	-	226532084,226542638	226538699,226542738	0.689354
SJCRH30	chr17	76773095	76773096	76773095	+	High_confidence	4	6	7	0.387965	2.521641	chr17	76772816	76773304	LINE|L1|L1MEc	-	chr17	76773096	76778338	MFSD11|ENST00000590070.1	+	76773096,76774996,76776405,76778187	76773351,76775171,76776541,76778338	1.000000
SJCRH30	chr15	82546441	82546442	82546441	-	RAMPAGE_only	15	15	16	0.886778	3.272906	chr15	82546117	82546394	SINE|Alu|AluSx1	-	chr15	82536749	82540564	RPS17|ENST00000330244.11	-	82536749,82538305,82538879,82539980,82540425	82536881,82538371,82538985,82540132,82540564	0.937500
SJCRH30	chr4	84299165	84299244	84299165	-	High_confidence	4	8	21	1.163896	3.748995	chr4	84298780	84304810	LINE|L1|L1PA2	+	chr4	83968081	84299169	LOC101928978|NR_125909.1	-	83968081,84012054,84148046,84149218,84243110,84284205,84286668,84293219,84299123	83970110,84012119,84148130,84149256,84243216,84284326,84286827,84293409,84299169	0.619048
SJCRH30	chr16	89543048	89543049	89543048	+	High_confidence	7	7	7	0.387965	2.807355	chr16	89542938	89543245	SINE|Alu|AluY	-	chr16	89542983	89557747	SPG7|ENST00000647302.1	+	89542983,89545871,89546657,89548002,89550493,89552978,89553793,89554485,89556886	89544772,89546181,89546760,89548113,89550609,89553135,89553960,89554563,89557747	1.000000
SJCRH30	chr3	114624974	114625034	114625033	-	High_confidence	5	5	24	1.330167	3.522055	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.791667
SJCRH30	chr4	86453195	86453342	86453231	-	High_confidence	11	14	201	11.140148	5.485437	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016153	86453225	MAPK10|ENST00000639972.2	-	86016153,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194308,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453225	0.920398
SJCRH30	chr13	113187334	113187345	113187336	-	High_confidence	2	3	9	0.498813	2.750000	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.777778
SJCRH30	chr1	168787065	168787103	168787087	+	High_confidence	176	181	691	38.297723	6.811746	chr1	168786791	168787303	LTR|ERVL-MaLR|MLT1L	+	chr1	168786940	168792888	LINC00626|NR_024160.1	+	168786940,168788780,168792330	168787228,168788889,168792888	0.947902
SJCRH30	chr12	15001825	15001826	15001825	+	High_confidence	4	4	7	0.387965	2.584963	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.857143
SJCRH30	chr7	85405601	85405606	85405602	+	RAMPAGE_only	16	19	41	2.272369	4.160420	chr7	85405415	85405942	LTR|ERVL|MLT2A2	+	chr7	85421121	85489293	LINC00972|ENST00000438065.1	+	85421121,85449859,85475251,85488881	85421258,85449989,85475360,85489293	0.536585
SJCRH30	chrX	16712889	16712979	16712889	-	High_confidence	11	12	59	3.269994	5.138302	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.915254
SJCRH30	chr3	134485367	134485463	134485443	-	High_confidence	10	10	81	4.489313	5.081143	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.987654
SJCRH30	chr2	3536815	3536905	3536872	-	High_confidence	7	7	60	3.325417	5.047299	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.916667
SJCRH30	chr14	100829593	100829613	100829612	+	High_confidence	2	4	7	0.387965	2.521641	chr14	100829596	100829639	LINE|L2|L2b	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	1.000000
SJCRH30	chr19	9140393	9140428	9140393	+	High_confidence	18	18	77	4.267619	4.917262	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.844156
SJCRH30	chr1	182634065	182634067	182634065	+	High_confidence	95	128	149	8.258120	5.183502	chr1	182634066	182634251	SINE|tRNA-RTE|MamSINE1	+	chr1	182634054	182635894	MSTRG.2090.1	+	182634054	182635894	0.919463
SJCRH30	chr21	29077437	29077487	29077486	+	High_confidence	15	15	64	3.547112	4.787536	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.718750
SJCRH30	chr5	34918368	34918371	34918370	+	RAMPAGE_only	7	13	14	0.775931	2.507380	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	0.928571
SJCRH30	chr10	102449836	102449839	102449836	+	High_confidence	2	2	7	0.387965	2.584963	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.571429
SJCRH30	chr1	113758055	113758060	113758059	-	RAMPAGE_only	5	5	10	0.554236	2.947703	chr1	113758040	113758255	SINE|Alu|AluSq2	+	chr1	113697201	113759155	PHTF1|ENST00000393357.6	-	113697201,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113759155	0.800000
SJCRH30	chr2	218287279	218287306	218287279	-	High_confidence	29	29	85	4.711008	5.279721	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.694118
SJCRH30	chr2	73736756	73736757	73736756	-	High_confidence	23	23	24	1.330167	3.675311	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73729889	73737335	MSTRG.14616.5	-	73729889,73730559,73732162,73734428,73737301	73730029,73730736,73732285,73734588,73737335	0.958333
SJCRH30	chrX	15820561	15820622	15820591	+	RAMPAGE_only	28	40	147	8.147273	4.325334	chrX	15820493	15820591	SINE|MIR|MIR3	-	chrX	15790471	15823260	ZRSR2|ENST00000307771.7	+	15790471,15790933,15799871,15803687,15804110,15808232,15809199,15815676,15818586,15820206,15822730	15790536,15791013,15799953,15803796,15804197,15808271,15809318,15815890,15818642,15820316,15823260	0.959184
SJCRH30	chr12	5567604	5567628	5567604	-	RAMPAGE_only	8	8	19	1.053049	3.576618	chr12	5567510	5567630	LINE|CR1|L3b	-	chr12	5562657	5564638	ANO2|ENST00000612575.1	-	5562657,5564462	5563568,5564638	1.000000
SJCRH30	chr21	39917954	39917955	39917954	+	RAMPAGE_only	13	13	17	0.942202	2.858459	chr21	39917760	39918148	LTR|ERVL-MaLR|MLT1B	+	chr21	39898475	39929397	PCP4|ENST00000467565.1	+	39898475,39916065,39928983	39898527,39916186,39929397	0.941176
SJCRH30	chr11	64226139	64226180	64226158	-	High_confidence	55	65	293	16.239121	6.529191	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.955631
SJCRH30	chr13	30875273	30875274	30875273	+	RAMPAGE_only	15	16	16	0.886778	2.732915	chr13	30875107	30875373	SINE|Alu|AluJr	-	chr13	30882550	30883395	LINC00545|ENST00000440633.1	+	30882550,30883093	30882659,30883395	0.875000
SJCRH30	chr19	56835470	56835483	56835470	-	High_confidence	4	4	13	0.720507	2.807390	chr19	56835430	56835525	LINE|L2|L2c	+	chr19	56774593	56836078	ZIM2|ENST00000597281.5	-	56774593,56779376,56781952,56782399,56789871,56818599,56821650,56822752,56823589,56824261,56826387,56836017	56775529,56779472,56782121,56782471,56789951,56818702,56821754,56822836,56823679,56824427,56826463,56836078	0.538462
SJCRH30	chr1	6200570	6200658	6200657	-	High_confidence	203	220	1431	79.311204	4.177748	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.981831
SJCRH30	chr12	70468078	70468123	70468122	+	High_confidence	6	8	26	1.441014	3.921030	chr12	70467961	70468294	LTR|ERV1|MER61A	+	chr12	70468122	70520839	AC025569.1|ENST00000549616.5	+	70468122,70507894,70510211,70513184,70520198,70520785	70468327,70508001,70510284,70513227,70520267,70520839	0.500000
SJCRH30	chr1	28507644	28507661	28507660	+	RAMPAGE_only	3	5	13	0.720507	2.661226	chr1	28507600	28507904	SINE|Alu|AluSg	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.769231
SJCRH30	chr15	66502611	66502741	66502611	-	High_confidence	59	59	622	34.473493	6.624516	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.937299
SJCRH30	chr5	133252219	133252220	133252219	-	High_confidence	5	5	8	0.443389	2.500000	chr5	133252112	133252262	LTR|Gypsy|LTR81AB	+	chr5	133220772	133252264	FSTL4|ENST00000507112.1	-	133220772,133225149,133225657,133233416,133249409,133252126	133220866,133225284,133225819,133233537,133249576,133252264	0.625000
SJCRH30	chr12	14665635	14665655	14665635	+	High_confidence	14	16	53	2.937452	4.366370	chr12	14665652	14665749	LINE|L2|L2a	+	chr12	14665654	14757963	AC010168.1|ENST00000501178.2	+	14665654,14665858,14672265,14718034,14757594	14665697,14666013,14672314,14718075,14757963	0.735849
SJCRH30	chr12	31119302	31119326	31119302	-	High_confidence	3	5	22	1.219320	3.784184	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.863636
SJCRH30	chr7	134527596	134527597	134527596	+	High_confidence	18	20	21	1.163896	3.884184	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.952381
SJCRH30	chr14	38948199	38948237	38948236	-	High_confidence	7	8	28	1.551861	4.110577	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38838888	38948237	LINC00639|ENST00000556116.1	-	38838888,38941519,38948177	38839204,38941695,38948237	0.607143
SJCRH30	chr6	31186397	31186399	31186398	-	High_confidence	5	8	11	0.609660	3.121928	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31181779	31186705	MSTRG.21462.1	-	31181779	31186705	0.727273
SJCRH30	chr12	113773650	113773686	113773650	-	High_confidence	294	315	617	34.196375	6.819292	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113745703	113773663	LINC01234|ENST00000550223.5	-	113745703,113767074,113773614	113746595,113767208,113773663	0.617504
SJCRH30	chr2	240022181	240022184	240022183	-	RAMPAGE_only	5	9	11	0.609660	2.521928	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.909091
SJCRH30	chr3	193614814	193614845	193614844	+	High_confidence	2	3	9	0.498813	2.500000	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.888889
SJCRH30	chr17	60887052	60887084	60887083	+	High_confidence	4	4	12	0.665083	3.418296	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.500000
SJCRH30	chr8	140898318	140898333	140898318	-	RAMPAGE_only	3	3	10	0.554236	2.725481	chr8	140898046	140898347	DNA|hAT-Charlie|MER5C	-	chr8	140658388	140890768	PTK2|ENST00000519654.5	-	140658388,140664916,140668268,140674297,140675459,140686631,140700890,140706118,140717597,140735250,140739017,140743229,140744651,140746759,140752231,140761164,140764233,140789473,140793353,140800458,140803542,140818276,140818879,140830471,140846259,140846598,140864311,140879470,140890542	140659678,140664997,140668424,140674404,140675499,140686694,140701022,140706205,140717709,140735455,140739107,140743330,140744767,140746860,140752316,140761262,140764290,140789526,140793384,140800576,140803650,140818354,140819020,140830526,140846322,140846678,140864399,140879637,140890768	0.700000
SJCRH30	chr1	6208681	6208682	6208681	-	High_confidence	98	100	101	5.597786	3.315752	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.960396
SJCRH30	chr3	128104796	128104808	128104796	-	RAMPAGE_only	3	3	8	0.443389	2.521641	chr3	128104760	128104822	LINE|CR1|L3	-	chr3	128064781	128101619	RUVBL1|ENST00000472125.5	-	128064781,128097299,128098881,128100594,128101558	128065220,128097498,128098945,128100744,128101619	0.500000
SJCRH30	chr7	92477942	92477946	92477945	-	High_confidence	79	85	153	8.479814	6.089670	chr7	92477412	92478192	LTR|ERV1|LTR17	-	chr7	92468379	92477946	ERVW-1|ENST00000603704.1	-	92468379,92477381	92468945,92477946	0.901961
SJCRH30	chr19	5165585	5165623	5165585	-	RAMPAGE_only	38	38	127	7.038800	5.634207	chr19	5165394	5165784	LTR|ERV1|LTR12B	-	chr19	5158494	5340803	PTPRS|ENST00000588552.5	-	5158494,5173968,5207921,5208236,5210468,5210678,5211589,5211964,5212336,5214360,5214560,5215288,5215497,5216719,5218419,5218786,5219309,5219938,5220259,5220999,5222122,5238918,5240198,5243900,5245775,5258016,5265007,5273441,5274198,5286049,5340663	5159104,5174082,5208057,5208391,5210594,5210805,5211768,5212250,5212491,5214480,5214736,5215412,5215595,5216767,5218532,5218798,5219467,5220154,5220353,5221253,5222220,5239063,5240332,5244482,5246045,5258127,5265196,5273583,5274344,5286234,5340803	0.771654
SJCRH30	chr5	160199150	160199156	160199150	+	High_confidence	5	5	11	0.609660	2.550341	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	1.000000
SJCRH30	chr1	86703092	86703119	86703092	+	RAMPAGE_only	2	2	11	0.609660	2.921928	chr1	86702882	86703173	SINE|Alu|AluSz	+	chr1	86704569	86748184	SH3GLB1|NM_016009.4	+	86704569,86715723,86719506,86722539,86724312,86734601,86735078,86742207,86743127	86704971,86715865,86719635,86722673,86724405,86734691,86735179,86742436,86748184	0.727273
SJCRH30	chr10	103181328	103181329	103181328	-	High_confidence	8	8	8	0.443389	3.000000	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103181820	MSTRG.3446.2	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857,103181184	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982,103181820	0.875000
SJCRH30	chr3	142437345	142437366	142437345	-	RAMPAGE_only	4	6	14	0.775931	3.180833	chr3	142437150	142437570	LINE|L2|L2b	+	chr3	142311260	142447992	XRN1|ENST00000392981.6	-	142311260,142312597,142318591,142318789,142329433,142332374,142332966,142335447,142347233,142355400,142356911,142359861,142365046,142365309,142370484,142371238,142375797,142376478,142380081,142383299,142384522,142397328,142400443,142403673,142403868,142404906,142412543,142414134,142417139,142418503,142418814,142421015,142421475,142422581,142422834,142423559,142425221,142425428,142426743,142432660,142447869	142311813,142312758,142318694,142318903,142329615,142332534,142333089,142335509,142347342,142355496,142357119,142359931,142365179,142365366,142370620,142371328,142375944,142376594,142380180,142383413,142384685,142397460,142400547,142403772,142403989,142405076,142412663,142414291,142417229,142418609,142418881,142421153,142421543,142422750,142422922,142423642,142425332,142425538,142426841,142432893,142447992	0.857143
SJCRH30	chr10	65570465	65570536	65570515	+	High_confidence	13	20	99	5.486939	5.558720	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570501	65585801	LINC01515|ENST00000599409.5	+	65570501,65571424,65572934,65585484,65585664	65570759,65571579,65573056,65585567,65585801	0.535354
SJCRH30	chr5	116085455	116085462	116085461	+	High_confidence	6	6	12	0.665083	3.084963	chr5	116085484	116085794	DNA|hAT-Charlie|MER113	+	chr5	116085461	116293290	COMMD10|NM_001308080.1	+	116085461,116087496,116091078,116092544,116134067,116291516,116292450	116085606,116087587,116091189,116092700,116134178,116291576,116293290	0.500000
SJCRH30	chr2	174547133	174547168	174547158	+	High_confidence	2	2	12	0.665083	3.459432	chr2	174547163	174547404	LTR|ERV1|LTR78	+	chr2	174547373	174665689	AC010894.3|ENST00000412835.1	+	174547373,174655497,174665176	174547477,174656285,174665689	0.666667
SJCRH30	chr21	39917885	39917909	39917908	+	RAMPAGE_only	7	8	20	1.108472	3.884184	chr21	39917760	39918148	LTR|ERVL-MaLR|MLT1B	+	chr21	39898475	39929397	PCP4|ENST00000467565.1	+	39898475,39916065,39928983	39898527,39916186,39929397	0.900000
SJCRH30	chr9	128684459	128684493	128684492	-	RAMPAGE_only	4	4	11	0.609660	2.732159	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683077	128694740	MSTRG.25405.1	-	128683077,128691169,128691857,128692661,128692867,128693637,128693895,128694640	128684007,128691227,128692000,128692765,128692981,128693808,128694042,128694740	0.545455
SJCRH30	chr6	169188429	169188503	169188430	-	High_confidence	30	59	222	12.304044	6.330902	chr6	169188265	169188418	LINE|L2|L2	-	chr6	169170734	169188496	MSTRG.22429.4	-	169170734,169173993,169185170	169171995,169183596,169188496	0.986486
SJCRH30	chr12	131991079	131991118	131991117	+	RAMPAGE_only	6	8	23	1.274743	3.784942	chr12	131991086	131991241	SINE|MIR|MIRb	-	chr12	131960584	132081102	EP400|ENST00000389562.6	+	131960584,131979693,131981488,131982092,131986513,131987704,131989963,131990635,131991406,131992172,131994866,132005076,132006111,132006699,132011497,132013008,132013489,132013776,132017534,132018209,132020048,132021078,132023776,132025645,132027436,132028016,132029700,132029988,132031952,132037681,132037952,132043303,132043644,132044176,132044670,132044799,132045318,132045726,132050322,132050598,132053145,132053342,132054973,132055098,132062109,132062465,132064667,132066773,132067361,132069494,132076515,132077400	131961954,131979793,131981596,131982478,131986807,131987890,131990104,131990714,131991456,131992230,131994956,132005184,132006302,132006877,132011634,132013178,132013664,132013913,132017721,132018376,132020218,132021321,132023941,132025804,132027531,132028288,132029903,132030158,132032149,132037793,132038096,132043462,132043728,132044311,132044715,132044953,132045560,132045900,132050459,132050655,132053224,132053597,132055019,132055208,132062323,132062701,132064886,132066969,132067486,132069641,132076593,132081102	0.869565
SJCRH30	chr1	84479010	84479011	84479010	+	High_confidence	9	9	9	0.498813	2.947703	chr1	84478881	84479033	LINE|L2|L2a	+	chr1	84479236	84498350	RPF1|NM_025065.6	+	84479236,84480955,84482914,84489632,84490318,84495372,84495881,84496243,84497428	84479509,84481012,84482995,84489728,84490472,84495455,84496063,84496370,84498350	0.777778
SJCRH30	chr15	82146918	82146971	82146970	-	RAMPAGE_only	8	8	22	1.219320	3.521928	chr15	82146299	82147190	LINE|CR1|L3	+	chr15	82130219	82262528	EFL1|NM_001322845.1	-	82130219,82138657,82151464,82157712,82163852,82214716,82219651,82220077,82225164,82227449,82228190,82229033,82230847,82238306,82240417,82241269,82252690,82259087,82261687,82262136	82130561,82138842,82152423,82157860,82163984,82214855,82219818,82220229,82225264,82227572,82228327,82229110,82230971,82238521,82240555,82241403,82252775,82259155,82261797,82262528	0.818182
SJCRH30	chr2	240022210	240022244	240022225	-	RAMPAGE_only	7	7	25	1.385591	2.619910	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.920000
SJCRH30	chr16	66408513	66408553	66408519	+	High_confidence	5	5	32	1.773556	4.366729	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66412135	LINC00920|ENST00000499966.1	+	66408523,66410279	66408814,66412135	0.843750
SJCRH30	chr14	102235451	102235472	102235471	-	High_confidence	4	4	12	0.665083	2.855389	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.750000
SJCRH30	chrX	7147240	7147291	7147287	+	High_confidence	7	8	31	1.718132	3.760012	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.935484
SJCRH30	chr19	48868595	48868637	48868613	-	High_confidence	492	624	2837	157.236818	7.602891	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.994360
SJCRH30	chr1	1655389	1655422	1655409	-	RAMPAGE_only	8	12	25	1.385591	3.593270	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635586	1659012	CDK11B|ENST00000407249.7	-	1635586,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642346,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	1.000000
SJCRH30	chr12	57229231	57229234	57229233	+	High_confidence	10	17	22	1.219320	3.721928	chr12	57229177	57229349	SINE|MIR|MIRc	-	chr12	57229326	57234931	SHMT2|ENST00000328923.7	+	57229326,57230802,57231480,57231712,57232210,57232452,57232703,57233179,57233562,57233748,57234002,57234233	57229811,57231000,57231560,57231913,57232292,57232575,57232843,57233345,57233662,57233904,57234110,57234931	0.909091
SJCRH30	chr9	111783959	111783964	111783963	-	High_confidence	8	9	17	0.942202	3.875000	chr9	111783697	111784151	LTR|ERVL|MER70A	-	chr9	111686518	111783499	C9orf84|NM_173521.4	-	111686518,111691550,111693798,111694230,111699953,111702104,111703880,111705246,111706567,111707854,111713099,111714444,111718183,111722408,111723791,111727632,111738279,111741475,111746233,111748091,111756324,111758083,111758694,111775790,111780929,111783387	111686870,111692511,111693948,111694362,111700047,111702226,111703992,111705364,111706746,111707924,111713172,111714623,111718288,111722585,111723911,111728049,111738522,111741570,111746342,111748199,111756478,111758195,111758848,111775975,111781017,111783499	0.941176
SJCRH30	chr15	82146865	82146872	82146865	-	RAMPAGE_only	2	2	8	0.443389	2.807355	chr15	82146299	82147190	LINE|CR1|L3	+	chr15	82130219	82262528	EFL1|NM_001322845.1	-	82130219,82138657,82151464,82157712,82163852,82214716,82219651,82220077,82225164,82227449,82228190,82229033,82230847,82238306,82240417,82241269,82252690,82259087,82261687,82262136	82130561,82138842,82152423,82157860,82163984,82214855,82219818,82220229,82225264,82227572,82228327,82229110,82230971,82238521,82240555,82241403,82252775,82259155,82261797,82262528	0.750000
SJCRH30	chr6	43013388	43013393	43013392	-	High_confidence	38	38	59	3.269994	5.176686	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
SJCRH30	chr1	160263333	160263349	160263333	-	High_confidence	4	4	14	0.775931	2.896292	chr1	160263175	160263341	LINE|L2|L2a	+	chr1	160215714	160262560	DCAF8|NM_015726.3	-	160215714,160218323,160218848,160222650,160224441,160225061,160225590,160231296,160237134,160238606,160239696,160243959,160261284,160262448	160217708,160218440,160218968,160222781,160224549,160225119,160225663,160231407,160237229,160238747,160240370,160244034,160261358,160262560	0.928571
SJCRH30	chr21	33945809	33945810	33945809	-	RAMPAGE_only	44	45	45	2.494063	4.416834	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	0.977778
SJCRH30	chr4	177728735	177728761	177728735	+	High_confidence	4	5	12	0.665083	2.913977	chr4	177728388	177728944	LTR|ERVL|LTR18B	+	chr4	177728756	177990750	LINC01098|ENST00000507870.1	+	177728756,177732366,177960761,177966674,177975803,177990478	177729017,177732479,177960905,177966778,177975943,177990750	0.916667
SJCRH30	chr2	96303165	96303267	96303166	-	RAMPAGE_only	4	7	45	2.494063	4.604667	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.977778
SJCRH30	chr14	57112666	57112677	57112676	-	High_confidence	11	11	27	1.496438	3.913270	chr14	57112210	57118214	LINE|L1|L1PA2	+	chr14	57067007	57112660	AL391152.1|ENST00000551408.2	-	57067007,57112194	57067165,57112660	0.666667
SJCRH30	chr3	142437923	142437987	142437923	-	RAMPAGE_only	59	64	238	13.190822	5.983125	chr3	142437583	142438177	LINE|L1|L1MA2	+	chr3	142422634	142429774	XRN1|ENST00000477237.1	-	142422634,142422834,142423559,142425221,142425428,142426743,142429694	142422750,142422922,142423642,142425332,142425538,142426841,142429774	0.512605
SJCRH30	chr6	3195772	3195783	3195772	-	High_confidence	20	20	56	3.103723	4.495142	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.946429
SJCRH30	chr16	58755976	58755977	58755976	-	RAMPAGE_only	7	7	8	0.443389	2.521641	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	0.875000
SJCRH30	chr15	77894340	77894356	77894340	+	High_confidence	3	3	8	0.443389	3.000000	chr15	77894200	77894526	LTR|ERV1|LTR12C	-	chr15	77894683	77904674	CSPG4P13|ENST00000567704.5	+	77894683,77896102,77901334,77902112,77903925,77904225,77904503	77894838,77899611,77901788,77902290,77904124,77904360,77904674	0.625000
SJCRH30	chr7	92906169	92906180	92906169	+	RAMPAGE_only	4	4	12	0.665083	2.751629	chr7	92906034	92906414	LTR|ERVL-MaLR|MSTA	+	chr7	92854908	92917174	AC002454.1|ENST00000419668.1	+	92854908,92855683,92916836	92854953,92855827,92917174	0.916667
SJCRH30	chr4	75127183	75127272	75127183	-	RAMPAGE_only	10	10	63	3.491688	4.594842	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.904762
SJCRH30	chr4	78600124	78600127	78600124	+	High_confidence	4	4	9	0.498813	3.000000	chr4	78599930	78600224	LTR|ERV1|MER92A	-	chr4	78600050	78610451	MSTRG.19261.10	+	78600050,78601509,78604276,78610055	78600348,78601568,78604399,78610451	0.777778
SJCRH30	chr9	87042081	87042130	87042110	-	High_confidence	15	15	86	4.766432	5.474286	chr9	87041882	87047900	LINE|L1|L1PA3	+	chr9	87008450	87042126	LOC440173|NR_027471.1	-	87008450,87041870	87010210,87042126	0.825581
SJCRH30	chr10	25466216	25466228	25466222	+	RAMPAGE_only	2	3	10	0.554236	2.646439	chr10	25466034	25466313	LTR|ERV1|LTR12F	+	chr10	25175360	25602229	GPR158|NM_020752.2	+	25175360,25221051,25395910,25412249,25466650,25550975,25572648,25589006,25594291,25596642,25597771	25176322,25221157,25396013,25412473,25466719,25551085,25572887,25589145,25594397,25596789,25602229	0.500000
SJCRH30	chr21	26762133	26762143	26762142	-	High_confidence	41	44	63	3.491688	5.021567	chr21	26762052	26762346	LTR|ERV1|LTR8B	-	chr21	26760647	26762222	MSTRG.16518.1	-	26760647	26762222	0.873016
SJCRH30	chr5	151158473	151158502	151158473	-	High_confidence	2	3	17	0.942202	3.452820	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.823529
SJCRH30	chr5	34244696	34244699	34244698	-	High_confidence	6	9	10	0.554236	2.725481	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244698	MSTRG.19970.2	-	34175821,34179012,34182679,34218294,34244615	34175957,34179097,34182867,34218450,34244698	0.900000
SJCRH30	chr8	11795578	11795582	11795578	+	High_confidence	131	133	235	13.024551	4.860828	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	1.000000
SJCRH30	chr15	75626304	75626305	75626304	-	High_confidence	7	7	7	0.387965	2.521641	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
SJCRH30	chr1	45522855	45522859	45522858	-	High_confidence	8	9	13	0.720507	3.546594	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	1.000000
SJCRH30	chr17	21075853	21075856	21075855	+	High_confidence	23	36	49	2.715758	3.984622	chr17	21075733	21075870	LINE|L2|L2a	-	chr17	21075555	21090615	LINC01563|ENST00000456235.1	+	21075555,21090267	21075957,21090615	0.816327
SJCRH30	chr7	123211268	123211299	123211290	+	RAMPAGE_only	5	5	24	1.330167	3.567040	chr7	123211158	123211525	LTR|ERVL-MaLR|THE1D	+	chr7	123456628	123459856	AC073323.1|ENST00000419832.1	+	123456628,123457398,123459692	123456765,123457548,123459856	0.875000
SJCRH30	chr1	54199996	54200023	54199996	-	High_confidence	24	27	118	6.539987	5.628285	chr1	54199790	54199971	SINE|MIR|MIRb	-	chr1	54172335	54200010	CYB5RL|ENST00000421415.5	-	54172335,54179148,54184160,54187651,54195418,54196368,54199975	54174822,54179352,54184265,54187739,54195715,54196491,54200010	0.864407
SJCRH30	chr7	2242922	2242923	2242922	+	High_confidence	54	54	54	2.992876	5.148316	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
SJCRH30	chr5	149509878	149509924	149509878	-	RAMPAGE_only	2	3	20	1.108472	3.721612	chr5	149509722	149509839	SINE|Alu|AluJb	-	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.800000
SJCRH30	chr7	54759973	54759974	54759973	-	High_confidence	8	8	9	0.498813	3.000000	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.888889
SJCRH30	chr3	9986887	9986927	9986926	+	High_confidence	6	6	33	1.828980	4.620152	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986910	10005244	EMC3-AS1|ENST00000326237.3	+	9986910,10002716	9987264,10005244	0.606061
SJCRH30	chr15	74463749	74463768	74463749	-	RAMPAGE_only	7	7	16	0.886778	2.608459	chr15	74463380	74463723	LINE|L1|L1MC4	-	chr15	74445976	74461188	UBL7|NM_001286742.1	-	74445976,74448477,74449185,74449625,74449935,74450801,74451435,74452295,74456551,74458683,74460667,74461036	74446227,74448600,74449353,74449675,74450069,74450859,74451520,74452378,74456671,74458896,74460778,74461188	0.750000
SJCRH30	chr10	25466150	25466179	25466150	+	RAMPAGE_only	3	7	17	0.942202	3.286896	chr10	25466034	25466313	LTR|ERV1|LTR12F	+	chr10	25175360	25602229	GPR158|NM_020752.2	+	25175360,25221051,25395910,25412249,25466650,25550975,25572648,25589006,25594291,25596642,25597771	25176322,25221157,25396013,25412473,25466719,25551085,25572887,25589145,25594397,25596789,25602229	0.705882
SJCRH30	chr1	58896259	58896260	58896259	-	High_confidence	5	5	7	0.387965	2.807355	chr1	58896196	58896314	SINE|MIR|MIRb	-	chr1	58882867	58896665	AC105277.1|ENST00000423408.5	-	58882867,58889148,58895844,58896546	58883734,58889208,58896009,58896665	1.000000
SJCRH30	chrX	2964545	2964554	2964545	-	High_confidence	2	3	10	0.554236	2.725481	chrX	2964489	2964607	SINE|Alu|AluJb	-	chrX	2934631	2964453	ARSE|NM_001282628.1	-	2934631,2936741,2938094,2943064,2945997,2949303,2953142,2955415,2958273,2959602,2960377,2964223	2935190,2936863,2938257,2943199,2946134,2949727,2953265,2955537,2958435,2959888,2960420,2964453	0.800000
SJCRH30	chr16	4355592	4355593	4355592	-	High_confidence	162	200	201	11.140148	4.671987	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.980100
SJCRH30	chr10	101771700	101771709	101771708	-	RAMPAGE_only	8	8	17	0.942202	3.155639	chr10	101771656	101771788	SINE|MIR|MIR3	+	chr10	101770323	101775900	FGF8|ENST00000344255.7	-	101770323,101771462,101774731,101775129,101775739,101775868	101770619,101771569,101774879,101775216,101775776,101775900	0.823529
SJCRH30	chr16	87860657	87860708	87860657	-	RAMPAGE_only	4	4	44	2.438639	4.181851	chr16	87860400	87860678	LTR|ERV1|MER4B	+	chr16	87830022	87863639	SLC7A5|ENST00000565644.5	-	87830022,87834413,87836497,87837844,87838713,87839701,87840428,87841049,87851723,87863589	87833025,87834591,87836647,87837941,87838817,87839825,87840473,87841155,87851849,87863639	0.909091
SJCRH30	chr4	102431237	102431248	102431247	-	High_confidence	14	14	34	1.884403	4.226410	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.941176
SJCRH30	chr2	128746427	128746439	128746428	-	High_confidence	28	45	71	3.935077	4.764629	chr2	128746345	128746703	LTR|ERVL|LTR42	-	chr2	128743281	128746429	MSTRG.14994.1	-	128743281,128746366	128745643,128746429	0.957746
SJCRH30	chr21	33968463	33968481	33968463	-	High_confidence	10	10	20	1.108472	3.616349	chr21	33968191	33968612	LTR|ERVL-MaLR|MLT1J	-	chr21	33967100	33968573	AP000569.1|ENST00000607953.1	-	33967100,33968232	33967350,33968573	0.950000
SJCRH30	chr11	24932544	24932588	24932544	+	High_confidence	14	14	110	6.096598	5.416143	chr11	24931536	24933353	LINE|L1|L1PB1	-	chr11	24932541	25081104	MSTRG.3985.9	+	24932541,24976590,24983125,25050037,25077328,25078553	24932688,24976665,24983293,25050130,25077406,25081104	0.836364
SJCRH30	chr20	18793966	18793987	18793986	-	High_confidence	6	7	11	0.609660	3.121928	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18788663	18794289	LINC00652|ENST00000454749.1	-	18788663,18789573,18791741,18793664,18794167	18788837,18789709,18792133,18793803,18794289	0.727273
SJCRH30	chr5	114740458	114740477	114740474	-	RAMPAGE_only	41	64	167	9.255745	5.866468	chr5	114740408	114740565	LINE|CR1|L3b	-	chr5	114447417	114773413	LOC101927078|NR_130785.1	-	114447417,114448562,114469761,114470167,114472188,114474310,114475144,114485473,114488885,114496101,114667608,114668107,114773334	114447670,114448803,114469811,114470245,114472357,114474500,114475412,114485692,114489031,114496178,114667747,114668231,114773413	0.910180
SJCRH30	chr18	39800293	39800314	39800297	-	High_confidence	25	27	97	5.376091	5.841378	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.525773
SJCRH30	chr11	57568212	57568233	57568212	-	High_confidence	7	7	12	0.665083	2.845351	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	0.916667
SJCRH30	chr1	1655445	1655474	1655445	-	RAMPAGE_only	3	7	24	1.330167	4.055958	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.500000
SJCRH30	chr19	5680234	5680241	5680240	-	High_confidence	5	5	9	0.498813	2.641604	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
SJCRH30	chr7	92482053	92482058	92482053	+	RAMPAGE_only	6	6	11	0.609660	2.550341	chr7	92480008	92484840	LTR|ERV1|HERVH-int	-	chr7	92490084	92491579	AC007566.1|ENST00000441539.1	+	92490084,92491242	92490142,92491579	0.909091
SJCRH30	chr3	47513326	47513347	47513326	-	High_confidence	5	5	21	1.163896	3.536887	chr3	47512991	47513291	SINE|Alu|AluSx	-	chr3	47498285	47513381	ELP6|ENST00000444760.5	-	47498285,47501649,47504329,47510183,47511147,47512991	47498432,47501851,47504448,47510254,47511226,47513381	0.714286
SJCRH30	chr11	4129116	4129148	4129122	+	RAMPAGE_only	3	3	14	0.775931	2.950212	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	1.000000
SJCRH30	chr5	71586744	71586827	71586744	+	High_confidence	8	8	37	2.050674	3.725871	chr5	71586450	71587046	LTR|ERV1|MER51A	-	chr5	71587287	71657215	MCCC2|ENST00000512218.6	+	71587287,71592925,71596279,71599658,71602505,71604355,71632120,71634942,71635150,71641002,71643770,71646210,71649096,71650068,71652668,71656742	71587554,71592992,71596364,71599760,71602633,71604468,71632185,71635042,71635246,71641083,71643895,71646277,71649253,71650183,71652754,71657215	0.837838
SJCRH30	chr12	31119035	31119121	31119106	-	High_confidence	17	26	165	9.144898	5.647578	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	1.000000
SJCRH30	chr6	31186198	31186205	31186198	-	High_confidence	3	3	12	0.665083	3.095795	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31181779	31186705	MSTRG.21462.1	-	31181779	31186705	0.500000
SJCRH30	chr19	55280217	55280245	55280218	-	High_confidence	13	16	36	1.995250	3.132417	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.972222
SJCRH30	chr4	103416352	103416355	103416352	+	RAMPAGE_only	6	6	13	0.720507	2.931209	chr4	103416312	103416527	LTR|ERVL-MaLR|THE1B	+	chr4	103256158	103453658	LINC02428|ENST00000513793.5	+	103256158,103425054,103436934,103453599	103256294,103425185,103437046,103453658	0.692308
SJCRH30	chr17	29050994	29051025	29051024	+	High_confidence	6	6	14	0.775931	3.182006	chr17	29050859	29051134	SINE|Alu|AluSg	+	chr17	29051955	29053660	PIPOX|ENST00000419875.2	+	29051955,29052919,29053412	29052011,29053133,29053660	0.857143
SJCRH30	chr7	23285954	23285963	23285962	+	RAMPAGE_only	7	7	18	0.997625	3.308271	chr7	23285656	23286117	LTR|ERV1|MER51E	+	chr7	23299199	23311729	MALSU1|ENST00000466681.1	+	23299199,23300838,23307867,23309355	23299608,23301017,23307949,23311729	1.000000
SJCRH30	chr18	7946863	7946888	7946887	+	High_confidence	7	7	16	0.886778	2.852217	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	1.000000
SJCRH30	chr1	6200807	6200879	6200859	-	High_confidence	12	12	73	4.045924	3.364800	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.986301
SJCRH30	chr8	143717179	143717225	143717216	+	High_confidence	6	6	32	1.773556	4.031402	chr8	143716947	143717418	LINE|L2|L2c	-	chr8	143716377	143720291	MAPK15|ENST00000395107.8	+	143716377,143717693,143718046,143718211,143718723,143718992,143719342,143720229	143716443,143717792,143718076,143718302,143718905,143719156,143719482,143720291	0.562500
SJCRH30	chr2	70257706	70257720	70257706	+	High_confidence	7	7	12	0.665083	2.913977	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.916667
SJCRH30	chr1	157273782	157273797	157273782	+	RAMPAGE_only	3	3	9	0.498813	2.947703	chr1	157273297	157273792	LTR|ERV1|LTR21A	-	chr1	157280715	157283068	AL138900.3|ENST00000607010.1	+	157280715,157282577	157280853,157283068	0.888889
SJCRH30	chr22	37849302	37849326	37849317	-	High_confidence	27	31	95	5.265244	5.050370	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.978947
SJCRH30	chr1	15236486	15236534	15236520	+	RAMPAGE_only	7	7	38	2.106098	4.218129	chr1	15236272	15236744	LTR|ERVL-MaLR|MLT1K	+	chr1	15247271	15398126	FHAD1|ENST00000358897.8	+	15247271,15251770,15272322,15289398,15296683,15301204,15308612,15313056,15316377,15317823,15324451,15327058,15328276,15329345,15341735,15345082,15345415,15349041,15352876,15358109,15360477,15362641,15365826,15367462,15369369,15374501,15375602,15380700,15381230,15382027,15397296	15247395,15251877,15272529,15289666,15296793,15301441,15308736,15313187,15316467,15317928,15324559,15327142,15328429,15329541,15341893,15345190,15345523,15349149,15352984,15358283,15360703,15362726,15365933,15367622,15369502,15374631,15375730,15380796,15381451,15382193,15398126	0.578947
SJCRH30	chr11	27220088	27220147	27220088	-	High_confidence	15	18	81	4.489313	5.098550	chr11	27219703	27225730	LINE|L1|L1PA2	+	chr11	27063019	27220086	BBOX1-AS1|ENST00000530430.1	-	27063019,27066491,27151049,27217316,27219686	27063060,27066662,27151152,27217480,27220086	0.654321
SJCRH30	chr5	172958875	172958919	172958912	+	High_confidence	14	14	61	3.380841	4.197802	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.918033
SJCRH30	chr5	150640314	150640351	150640347	+	High_confidence	7	9	20	1.108472	3.616349	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.950000
SJCRH30	chr5	58937339	58937340	58937339	+	RAMPAGE_only	6	7	8	0.443389	2.750000	chr5	58937065	58937991	LINE|L1|L1M2	-	chr5	59039760	59063503	AC092343.1|ENST00000500224.2	+	59039760,59063084	59040070,59063503	0.500000
SJCRH30	chr9	110599444	110599481	110599463	+	High_confidence	4	5	16	0.886778	3.375000	chr9	110598558	110599925	LINE|L1|L1PA12	-	chr9	110599474	110605219	AL592463.1|ENST00000451108.1	+	110599474,110604417,110604709	110599528,110604488,110605219	0.812500
SJCRH30	chr12	126772303	126772360	126772336	-	High_confidence	12	12	49	2.715758	4.292493	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126748055	126772356	LINC00944|ENST00000542248.5	-	126748055,126760931,126763414,126772078	126748127,126761045,126763498,126772356	0.714286
SJCRH30	chr3	150022846	150022847	150022846	-	High_confidence	9	9	12	0.665083	2.792481	chr3	150022711	150025262	LINE|L1|L1PB1	+	chr3	149964903	150022799	PFN2|ENST00000649949.1	-	149964903,149968357,150020954,150022514	149966586,149968550,150021118,150022799	0.500000
SJCRH30	chr12	8320262	8320267	8320262	+	High_confidence	5	5	14	0.775931	2.753434	chr12	8318355	8321168	LTR|ERV1|HERVS71-int	-	chr12	8320380	8369555	AC092745.2|ENST00000537764.1	+	8320380,8368981	8320426,8369555	0.714286
SJCRH30	chr15	52100532	52100544	52100543	-	High_confidence	24	32	118	6.539987	5.818729	chr15	52100279	52100861	LTR|ERVL|MER73	-	chr15	52056674	52100523	AC023906.5|ENST00000558607.1	-	52056674,52100469	52057255,52100523	0.915254
SJCRH30	chr17	59619894	59619926	59619894	+	High_confidence	301	386	1397	77.426801	6.108481	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.967072
SJCRH30	chr12	78964111	78964124	78964111	+	RAMPAGE_only	5	5	11	0.609660	2.845351	chr12	78964126	78964183	LINE|L2|L2b	+	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.545455
SJCRH30	chr14	100929920	100929921	100929920	+	RAMPAGE_only	93	106	106	5.874904	5.875056	chr14	100929864	100929989	LINE|L1|L1ME5	+	chr14	100906043	100947076	MSTRG.7843.62	+	100906043,100906935,100910232,100913431,100914671,100916678,100931913,100932305,100938879,100940364,100942761,100944808,100947033	100906163,100907132,100910304,100913521,100916658,100931545,100932105,100937488,100938956,100940450,100942838,100944872,100947076	1.000000
SJCRH30	chr6	2972169	2972191	2972169	-	High_confidence	4	4	15	0.831354	3.056565	chr6	2971942	2972236	SINE|Alu|AluSz	+	chr6	2948158	2972165	SERPINB6|NM_001297699.1	-	2948158,2948913,2953043,2954591,2955523,2959167,2971247	2948699,2949069,2953186,2954709,2955670,2959342,2972165	1.000000
SJCRH30	chr13	30863413	30863498	30863493	+	High_confidence	2018	4399	11710	649.010622	6.834312	chr13	30863143	30863642	LTR|ERVL|MER74A	+	chr13	30863398	30883395	MSTRG.6573.3	+	30863398,30875273,30882559,30883093	30863578,30882004,30882659,30883395	0.758155
SJCRH30	chr3	142438051	142438121	142438051	-	RAMPAGE_only	70	87	315	17.458441	6.294141	chr3	142437583	142438177	LINE|L1|L1MA2	+	chr3	142422634	142429774	XRN1|ENST00000477237.1	-	142422634,142422834,142423559,142425221,142425428,142426743,142429694	142422750,142422922,142423642,142425332,142425538,142426841,142429774	0.536508
SJCRH30	chr12	52201478	52201527	52201478	+	RAMPAGE_only	3	3	15	0.831354	3.056565	chr12	52201520	52201894	LTR|ERVL-MaLR|MLT1D	+	chr12	52210929	52223813	LINC00592|NR_027358.1	+	52210929,52212043,52212598,52221976,52223445	52211020,52212156,52213027,52222028,52223813	0.733333
SJCRH30	chr5	147382883	147382900	147382886	+	High_confidence	18	19	73	4.045924	4.641076	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.945205
SJCRH30	chr8	15417190	15417191	15417190	+	High_confidence	53	53	76	4.212195	5.037031	chr8	15417004	15417387	LTR|ERVL-MaLR|MSTA	+	chr8	15417214	15673836	TUSC3|ENST00000503191.5	+	15417214,15483385,15623079,15659506,15662155,15673746	15417305,15483483,15623249,15659647,15662296,15673836	0.618421
SJCRH30	chr4	77011249	77011280	77011249	+	RAMPAGE_only	10	10	30	1.662709	3.952303	chr4	77011235	77011415	DNA|hAT-Charlie|MER117	+	chr4	77014870	77021639	SEPT11|ENST00000506047.1	+	77014870,77019164,77020501	77015017,77019261,77021639	0.733333
SJCRH30	chr2	157751395	157751440	157751439	-	High_confidence	41	41	108	5.985751	5.565280	chr2	157750930	157752572	LINE|L1|L1PB1	+	chr2	157736448	157751500	MSTRG.15110.2	-	157736448,157738439,157751232	157737665,157738570,157751500	0.962963
SJCRH30	chr11	9315498	9315550	9315516	-	High_confidence	12	16	60	3.325417	5.064735	chr11	9315325	9315621	SINE|Alu|AluSx1	+	chr11	9280670	9315574	MSTRG.3840.6	-	9280670,9286454,9287701,9288441,9295258,9299583,9314853,9315297	9283593,9286593,9287806,9288535,9295387,9299701,9315006,9315574	0.916667
SJCRH30	chr11	60912723	60912750	60912723	+	RAMPAGE_only	5	5	18	0.997625	3.734522	chr11	60912641	60913600	LTR|ERV1|LTR1D	-	chr11	60913873	60923443	TMEM109|ENST00000227525.7	+	60913873,60919685,60920885,60921773	60914268,60919930,60920988,60923443	0.666667
SJCRH30	chr4	75249205	75249225	75249205	-	High_confidence	21	21	54	2.992876	4.697181	chr4	75249050	75249547	DNA|TcMar-Tigger|Tigger7	+	chr4	75211968	75249241	MSTRG.19217.1	-	75211968,75212450,75249067	75212236,75212637,75249241	0.814815
SJCRH30	chr4	70993073	70993074	70993073	+	High_confidence	15	15	22	1.219320	3.386266	chr4	70992983	70993102	SINE|MIR|MIR	+	chr4	70993438	71030914	DCK|ENST00000286648.9	+	70993438,70998066,71022366,71023558,71025815,71026664,71029351	70993926,70998182,71022560,71023706,71025931,71026755,71030914	0.954545
SJCRH30	chr11	35918714	35918744	35918732	-	High_confidence	18	18	77	4.267619	5.367835	chr11	35918488	35918915	LTR|ERVL-MaLR|MLT1K	-	chr11	35915050	35918718	AC090692.1|ENST00000531569.1	-	35915050,35918010,35918580	35915349,35918114,35918718	0.805195
SJCRH30	chr5	40604013	40604014	40604013	-	RAMPAGE_only	10	10	10	0.554236	2.921928	chr5	40603855	40604209	LTR|ERVL-MaLR|THE1A	-	chr5	40512332	40755908	TTC33|ENST00000636863.1	-	40512332,40603931,40746797,40755823	40513069,40604036,40747019,40755908	0.600000
SJCRH30	chr7	130497232	130497233	130497232	+	High_confidence	14	14	16	0.886778	3.149397	chr7	130497281	130497565	SINE|Alu|AluSx	+	chr7	130498224	130500042	MEST|ENST00000494868.1	+	130498224,130498418,130499874	130498275,130498477,130500042	0.500000
SJCRH30	chr17	602076	602107	602106	-	RAMPAGE_only	15	16	40	2.216945	4.176110	chr17	602038	602389	LINE|L2|L2c	+	chr17	518952	676407	VPS53|ENST00000576149.5	-	518952,519825,521600,532841,537027,551871,553379,560425,562502,586269,599944,601794,623532,627173,628087,631549,676179	519298,519930,521738,532911,537176,551950,553462,560573,562745,586364,600094,601896,623674,627316,628231,631628,676407	0.900000
SJCRH30	chr19	13037401	13037419	13037418	+	RAMPAGE_only	6	6	19	1.053049	3.576618	chr19	13037335	13037620	LINE|CR1|L3b	+	chr19	13024938	13094770	NFIX|ENST00000587260.1	+	13024938,13073046,13073421,13073905,13075534,13078612,13081679,13090298,13094634	13025552,13073109,13073496,13074026,13075671,13078735,13081855,13090390,13094770	1.000000
SJCRH30	chr3	9391827	9391828	9391827	-	High_confidence	7	8	8	0.443389	2.521641	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9389914	9391822	THUMPD3-AS1|ENST00000522221.1	-	9389914,9391426	9390497,9391822	0.500000
SJCRH30	chr7	93591522	93591590	93591534	+	High_confidence	24	24	126	6.983376	5.254795	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591248	93911766	MSTRG.23090.1	+	93591248,93807203,93886505,93906738,93910789	93591771,93821759,93886549,93906842,93911766	0.777778
SJCRH30	chr5	54390786	54390869	54390840	+	RAMPAGE_only	20	22	92	5.098973	5.894889	chr5	54390655	54391005	LTR|ERVL-MaLR|THE1B	+	chr5	54395350	54415099	LINC01033|ENST00000504609.3	+	54395350,54396996,54400436,54401642,54408454,54415021	54395417,54397134,54400598,54401865,54408521,54415099	0.706522
SJCRH30	chr6	112297818	112297819	112297818	-	RAMPAGE_only	4	7	7	0.387965	2.807355	chr6	112297641	112298004	LTR|ERVL-MaLR|THE1D	-	chr6	112283593	112299116	MSTRG.22064.1	-	112283593,112298860	112287440,112299116	0.857143
SJCRH30	chr15	52163545	52163568	52163551	-	RAMPAGE_only	4	4	24	1.330167	2.818376	chr15	52162890	52164022	LINE|L1|L1PA11	+	chr15	52120925	52179965	GNB5|NM_006578.3	-	52120925,52124472,52125947,52128195,52133377,52135612,52141139,52147458,52149883,52153939,52179767	52122768,52124639,52126044,52128244,52133469,52135756,52141272,52147535,52149925,52154076,52179965	0.875000
SJCRH30	chr2	55618850	55618904	55618850	-	High_confidence	9	10	43	2.383216	4.643672	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	1.000000
SJCRH30	chr15	58521449	58521502	58521459	+	High_confidence	4	4	27	1.496438	3.997953	chr15	58521285	58521604	LINE|L2|L2c	-	chr15	58521310	58523371	AC018904.2|ENST00000561202.1	+	58521310,58521950	58521646,58523371	0.592593
SJCRH30	chr14	92958976	92958998	92958997	-	RAMPAGE_only	11	11	41	2.272369	4.637801	chr14	92958818	92959042	SINE|MIR|MIRb	-	chr14	92946330	93036880	ITPK1|ENST00000556954.5	-	92946330,92951945,92958200,92962354,92962750,93016675,93036846	92946493,92952013,92958366,92962395,92962849,93016801,93036880	0.634146
SJCRH30	chr1	21586467	21586486	21586467	+	High_confidence	3	3	8	0.443389	2.500000	chr1	21586352	21586578	LINE|RTE-X|L4_C_Mam	-	chr1	21586471	21591187	LINC02596|ENST00000457706.1	+	21586471,21590984	21587089,21591187	1.000000
SJCRH30	chr2	10120434	10120475	10120434	+	High_confidence	89	92	132	7.315918	5.425096	chr2	10120422	10120535	SINE|Alu|FLAM_C	+	chr2	10120697	10131418	RRM2|ENST00000641198.1	+	10120697,10122754,10122982,10123386,10123735,10124716,10126874,10127086,10128847,10129040,10129233	10120882,10122897,10123057,10123530,10123852,10124850,10126969,10127220,10128952,10129154,10131418	0.522727
SJCRH30	chr7	111392876	111392900	111392899	-	RAMPAGE_only	33	36	50	2.771181	4.996566	chr7	111392522	111393282	LTR|ERVL|MER21C	-	chr7	110663300	111390750	IMMP2L|ENST00000489381.1	-	110663300,110664823,110963499,111390570	110663721,110665012,110963565,111390750	0.720000
SJCRH30	chr3	31004516	31004556	31004527	-	RAMPAGE_only	2	2	10	0.554236	2.947703	chr3	31004363	31004856	LTR|ERVL-MaLR|MLT1G1	-	chr3	30726199	30894765	GADL1|ENST00000282538.9	-	30726199,30778178,30786354,30800888,30833852,30834216,30838996,30844209,30844386,30849995,30850834,30854698,30857014,30861592,30894577	30728415,30778268,30786406,30801088,30833934,30834281,30839113,30844264,30844466,30850111,30850941,30854789,30857141,30861765,30894765	0.500000
SJCRH30	chr14	30474223	30474247	30474246	-	RAMPAGE_only	4	4	11	0.609660	3.095795	chr14	30474044	30480062	LINE|L1|L1PA3	+	chr14	30469175	30503271	G2E3-AS1|ENST00000550118.2	-	30469175,30472379,30473521,30492718,30501819,30503229	30469354,30472503,30473599,30492821,30501902,30503271	0.545455
SJCRH30	chr6	31186081	31186118	31186117	-	High_confidence	25	28	84	4.655584	4.504120	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31181779	31186705	MSTRG.21462.1	-	31181779	31186705	0.797619
SJCRH30	chr2	239224329	239224365	239224364	-	RAMPAGE_only	5	5	21	1.163896	3.499228	chr2	239223959	239224428	LINE|L2|L2a	+	chr2	239163832	239191056	HDAC4|ENST00000454542.5	-	239163832,239176412,239189832,239190978	239163923,239176563,239190077,239191056	0.809524
SJCRH30	chr20	18794065	18794089	18794077	+	High_confidence	27	27	87	4.821855	3.406905	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
SJCRH30	chr6	140898419	140898430	140898421	-	High_confidence	162	252	521	28.875707	6.936418	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140898418	MSTRG.22229.2	-	140845957,140852818,140898187	140846304,140852924,140898418	0.754319
SJCRH30	chr15	96119973	96119988	96119973	-	RAMPAGE_only	2	2	8	0.443389	2.750000	chr15	96119893	96120178	SINE|Alu|AluSx	-	chr15	96110039	96126008	NR2F2-AS1|ENST00000616912.4	-	96110039,96121830,96125984	96110392,96121971,96126008	0.500000
SJCRH30	chr4	4461944	4461961	4461960	-	High_confidence	38	42	132	7.315918	5.326955	chr4	4461848	4462205	LTR|ERVL|LTR79	+	chr4	4425160	4461954	STX18|ENST00000512195.5	-	4425160,4434769,4438393,4457190,4457422,4459371,4461905	4425222,4434858,4438509,4457257,4457500,4459487,4461954	0.795455
SJCRH30	chr10	72355145	72355169	72355145	-	High_confidence	7	7	17	0.942202	2.771902	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.882353
SJCRH30	chr17	28970088	28970132	28970131	-	RAMPAGE_only	55	65	265	14.687260	5.833827	chr17	28970104	28970256	SINE|MIR|MIRc	-	chr17	28954905	28981592	SEZ6|ENST00000540419.5	-	28954905,28956158,28956349,28956718,28957044,28957347,28957946,28959024,28959333,28959697,28960504,28960804,28963961,28969756,28979679,28981370	28955978,28956261,28956467,28956757,28957242,28957539,28958141,28959221,28959472,28959837,28960671,28960973,28964147,28969952,28979813,28981592	0.716981
SJCRH30	chr1	58896362	58896375	58896374	-	High_confidence	5	9	16	0.886778	3.030639	chr1	58896345	58896492	SINE|MIR|MIR3	-	chr1	58882867	58896665	AC105277.1|ENST00000423408.5	-	58882867,58889148,58895844,58896546	58883734,58889208,58896009,58896665	0.875000
SJCRH30	chrX	72305913	72305914	72305913	-	High_confidence	8	8	8	0.443389	3.000000	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	1.000000
SJCRH30	chr11	125874345	125874389	125874376	-	High_confidence	7	7	42	2.327792	3.377890	chr11	125874041	125875038	LTR|ERV1|HUERS-P3-int	+	chr11	125873030	125874398	AP000842.3|ENST00000564354.1	-	125873030,125874245	125873685,125874398	0.880952
SJCRH30	chr17	5772217	5772218	5772217	+	High_confidence	1520	1827	2067	114.560628	6.621045	chr17	5771061	5772733	LTR|ERV1|LTR12C	+	chr17	5772233	5841296	MSTRG.10594.1	+	5772233,5837180,5838609	5773027,5837249,5841296	0.957910
SJCRH30	chr9	87042267	87042276	87042267	-	High_confidence	8	8	16	0.886778	3.327820	chr9	87041882	87047900	LINE|L1|L1PA3	+	chr9	87008450	87042126	LOC440173|NR_027471.1	-	87008450,87041870	87010210,87042126	0.875000
SJCRH30	chr9	39809803	39810034	39810033	-	High_confidence	139	140	692	38.353147	5.823658	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803692	39810063	MSTRG.24883.3	-	39803692,39809485,39809730	39803859,39809615,39810063	0.864162
SJCRH30	chr14	102083105	102083222	102083177	-	RAMPAGE_only	9	10	112	6.207446	5.508203	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.973214
SJCRH30	chr19	50179236	50179250	50179246	-	High_confidence	26	26	96	5.320668	5.827442	chr19	50179206	50179339	LINE|L2|L2a	+	chr19	50168105	50179368	MSTRG.13685.1	-	50168105,50179135	50168487,50179368	0.656250
SJCRH30	chr2	23524246	23524267	23524246	-	High_confidence	3	4	13	0.720507	2.855389	chr2	23524079	23524260	SINE|MIR|MIRc	-	chr2	23507042	23524344	AC011239.1|ENST00000430988.1	-	23507042,23523950	23507232,23524344	0.538462
SJCRH30	chr5	59301070	59301087	59301086	-	RAMPAGE_only	23	23	41	2.272369	4.784184	chr5	59300586	59301126	LTR|ERVL|MER21A	-	chr5	58969037	59276119	PDE4D|NM_001197220.1	-	58969037,58975656,58976349,58977190,58988492,58989754,58990803,58991831,58993371,59038858,59180594,59185188,59193499,59215776,59275337	58975080,58975839,58976472,58977345,58988592,58989919,58990902,58992004,58993465,59038971,59180644,59185262,59193536,59215968,59276119	0.731707
SJCRH30	chr16	17014269	17014294	17014282	+	High_confidence	3	4	14	0.775931	3.378783	chr16	17014167	17014470	SINE|Alu|AluY	-	chr16	17013784	17138732	MSTRG.9546.1	+	17013784,17025713,17134465,17138241	17014471,17025795,17134550,17138732	0.500000
SJCRH30	chr1	147517874	147517875	147517874	-	High_confidence	10	11	12	0.665083	3.277613	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147258884	147517875	LINC00624|ENST00000619867.4	-	147258884,147384667,147408589,147514337,147515520,147517442	147260976,147384863,147408689,147514448,147515676,147517875	0.916667
SJCRH30	chrX	103684686	103684723	103684722	-	RAMPAGE_only	2	4	8	0.443389	2.521641	chrX	103684643	103684884	SINE|MIR|MIR	-	chrX	103675504	103686668	MORF4L2|ENST00000441076.6	-	103675504,103678498,103685170,103686630	103677051,103678651,103685260,103686668	0.875000
SJCRH30	chr1	830973	830996	830986	+	High_confidence	5	7	18	0.997625	3.392147	chr1	830886	831024	LINE|L1|HAL1	-	chr1	831604	842020	LINC01128|ENST00000415295.1	+	831604,841199	831677,842020	0.666667
SJCRH30	chr21	42013447	42013459	42013458	-	RAMPAGE_only	3	5	6	0.332542	2.584963	chr21	42013297	42013410	LTR|ERVL-MaLR|MLT1C	-	chr21	41986830	42010387	ZBTB21|NM_001098403.1	-	41986830,41992492,42002896,42010251	41991889,41994108,42002961,42010387	0.666667
SJCRH30	chr12	10225989	10226001	10225991	+	High_confidence	5	6	10	0.554236	2.921928	chr12	10224515	10226197	LTR|ERV1|LTR12C	-	chr12	10226065	10315009	KLRD1|ENST00000540271.1	+	10226065,10304465,10307977,10311463,10313409,10314672	10226233,10304547,10309688,10311615,10313513,10315009	0.500000
SJCRH30	chr19	51354406	51354420	51354419	-	High_confidence	3	3	7	0.387965	2.521641	chr19	51354373	51354482	SINE|MIR|MIR3	-	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
SJCRH30	chr3	127735848	127735854	127735853	-	High_confidence	9	11	22	1.219320	4.106603	chr3	127735830	127736012	LINE|CR1|L3b	-	chr3	127692116	127736357	MGLL|ENST00000398101.7	-	127692116,127694974,127710575,127721052,127722429,127735704	127692323,127695190,127710665,127721163,127722566,127736357	0.954545
SJCRH30	chr19	12681156	12681200	12681156	-	High_confidence	4	4	19	1.053049	3.572431	chr19	12680833	12681131	SINE|Alu|AluSx3	-	chr19	12679624	12681161	DHPS|ENST00000599481.1	-	12679624,12679800,12680195,12681032	12679719,12679922,12680325,12681161	0.894737
SJCRH30	chr2	237085316	237085345	237085316	+	High_confidence	2	2	7	0.387965	2.807355	chr2	237085222	237085359	LINE|L2|L2	-	chr2	237085311	237100466	COPS8|ENST00000354371.6	+	237085311,237087126,237088604,237089861,237094089,237095821,237096821,237097662	237086042,237087197,237088653,237089994,237094197,237095884,237096869,237100466	1.000000
SJCRH30	chr22	47631707	47631788	47631710	+	High_confidence	9	10	65	3.602535	5.199538	chr22	47631336	47631805	LTR|ERVL|MLT2B1	-	chr22	47631673	47855600	AL117329.1|ENST00000423737.5	+	47631673,47635179,47686199,47686574,47686802,47687140,47704588,47738433,47854910	47631886,47635353,47686312,47686695,47686938,47687206,47704747,47738576,47855600	0.692308
SJCRH30	chr7	134432406	134432436	134432435	-	High_confidence	3	5	12	0.665083	2.663533	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.916667
SJCRH30	chr4	29653322	29653323	29653322	-	High_confidence	114	116	142	7.870154	5.617162	chr4	29653166	29653517	LTR|ERVL-MaLR|THE1D	-	chr4	29510343	29653347	MSTRG.19011.1	-	29510343,29539735,29653261	29516230,29539983,29653347	0.647887
SJCRH30	chr9	131818421	131818422	131818421	+	RAMPAGE_only	9	9	12	0.665083	2.913977	chr9	131818002	131818889	LTR|ERVL|MER21C	+	chr9	131816191	131820988	AL160271.1|ENST00000444708.1	+	131816191,131819850,131820641	131816387,131820136,131820988	0.750000
SJCRH30	chr9	127522802	127522838	127522802	-	RAMPAGE_only	2	2	11	0.609660	2.721928	chr9	127522529	127523072	LINE|L2|L2a	+	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	0.818182
SJCRH30	chr22	44801796	44801797	44801796	+	High_confidence	13	14	18	0.997625	3.499228	chr22	44801724	44801912	SINE|MIR|MIRb	+	chr22	44801819	44825551	ARHGAP8|ENST00000498310.1	+	44801819,44808306,44814671,44822370,44825482	44802164,44808438,44814758,44822469,44825551	0.833333
SJCRH30	chr3	10235136	10235143	10235136	+	RAMPAGE_only	7	7	13	0.720507	3.251629	chr3	10235017	10235226	LTR|ERVL-MaLR|MLT1O	-	chr3	10164878	10243743	IRAK2|NM_001570.3	+	10164878,10177837,10200368,10209588,10213206,10213483,10216933,10219679,10222635,10226370,10234458,10238747,10242115	10165048,10178020,10200515,10209692,10213401,10213548,10217048,10219789,10222831,10226433,10234659,10239039,10243743	0.923077
SJCRH30	chrX	49977920	49977958	49977953	+	RAMPAGE_only	10	11	34	1.884403	4.535849	chrX	49977956	49978051	SINE|MIR|MIR	+	chrX	50042337	50092406	MSTRG.25920.8	+	50042337,50054439,50069878,50072488,50075794,50080593,50081640,50085979,50086327,50088697,50090115,50090669,50092128	50050413,50054633,50070030,50072588,50075982,50080716,50081847,50086060,50086870,50088884,50090514,50090886,50092406	0.500000
SJCRH30	chr5	32531833	32531865	32531864	+	High_confidence	12	13	32	1.773556	3.679229	chr5	32531850	32532021	SINE|MIR|MIR3	-	chr5	32531632	32601323	SUB1|ENST00000506237.5	+	32531632,32588511,32591562,32598960,32601004	32531916,32588584,32591685,32599069,32601323	1.000000
SJCRH30	chr5	32403141	32403206	32403141	-	RAMPAGE_only	4	5	30	1.662709	4.182006	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.933333
SJCRH30	chr16	72627719	72627740	72627719	-	RAMPAGE_only	3	3	7	0.387965	2.521641	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.571429
SJCRH30	chr12	31119268	31119279	31119278	-	High_confidence	5	6	9	0.498813	2.503258	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	1.000000
SJCRH30	chr7	130367163	130367208	130367207	-	High_confidence	24	26	86	4.766432	4.750696	chr7	130366972	130367289	LTR|ERVL-MaLR|MLT1J2	-	chr7	130365649	130367127	LOC105375504|NR_133928.1	-	130365649,130366829	130365869,130367127	0.732558
SJCRH30	chr9	62376797	62376801	62376800	-	High_confidence	14	14	23	1.274743	2.859881	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.956522
SJCRH30	chr3	111911612	111911613	111911612	+	High_confidence	6	9	9	0.498813	2.947703	chr3	111911655	111911757	DNA|hAT-Ac|OldhAT1	+	chr3	111911609	111976465	PHLDB2|ENST00000495180.1	+	111911609,111913318,111919071,111920281,111932268,111939474,111940534,111945267,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111911724,111913702,111919215,111920419,111932397,111939630,111940645,111945357,111954029,111962312,111966703,111967824,111969909,111973817,111976465	1.000000
SJCRH30	chr1	203127094	203127138	203127094	+	High_confidence	6	6	26	1.441014	3.014694	chr1	203126924	203127118	SINE|MIR|MIR3	+	chr1	203127064	203167405	ADORA1|ENST00000367236.8	+	203127064,203128784,203165260	203127928,203129182,203167405	0.961538
SJCRH30	chr7	96785819	96785841	96785840	-	RAMPAGE_only	4	4	12	0.665083	2.625815	chr7	96785742	96785951	SINE|MIR|MIRc	+	chr7	96687950	96709891	SEM1|ENST00000248566.3	-	96687950,96694797,96709687	96688966,96694891,96709891	0.833333
SJCRH30	chr7	102337247	102337264	102337260	+	High_confidence	5	6	24	1.330167	3.688722	chr7	102337158	102337268	SINE|Alu|AluYe5	-	chr7	102337315	102339115	AC091390.2|ENST00000432573.1	+	102337315,102337579,102338931	102337402,102337682,102339115	0.875000
SJCRH30	chr5	70401444	70401512	70401504	+	High_confidence	51	94	540	29.928756	6.253083	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70401429	70450353	MSTRG.20209.1	+	70401429,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233,70449428	70401668,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70448865,70450353	0.968519
SJCRH30	chr12	22082467	22082527	22082526	-	High_confidence	32	35	201	11.140148	5.588390	chr12	22082443	22082846	LTR|ERVL|LTR16A	+	chr12	22063772	22082525	MSTRG.5282.1	-	22063772,22066344,22082385	22063927,22066435,22082525	0.825871
SJCRH30	chr16	15518460	15518532	15518460	+	High_confidence	7	7	33	1.828980	4.184863	chr16	15518437	15518591	LTR|ERVL|LTR86C	-	chr16	15517978	15587964	MSTRG.9525.15	+	15517978,15567982,15581216,15583155,15586716	15518645,15568056,15581331,15583238,15587964	0.787879
SJCRH30	chr12	66133127	66133173	66133172	-	RAMPAGE_only	4	4	10	0.554236	2.921928	chr12	66133075	66133369	SINE|Alu|AluSx	-	chr12	66116554	66130768	LLPH|ENST00000266604.6	-	66116554,66128895,66130704	66124018,66129113,66130768	1.000000
SJCRH30	chr8	120125636	120125659	120125636	+	High_confidence	10	10	41	2.272369	3.841967	chr8	120125674	120125869	DNA|hAT-Tip100?|MamRep1879	+	chr8	120125143	120277865	COL14A1|ENST00000432943.6	+	120125143,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120277484	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120277865	0.902439
SJCRH30	chr12	122064332	122064376	122064375	+	RAMPAGE_only	123	127	393	21.781484	6.858142	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.770992
SJCRH30	chr5	80517082	80517097	80517096	+	RAMPAGE_only	9	9	17	0.942202	3.750000	chr5	80516845	80517384	DNA|TcMar-Tigger|MER44B	+	chr5	80487985	80542042	FAM151B|ENST00000511718.5	+	80487985,80495052,80499884,80501791,80505942,80510713,80513603,80518763,80519692,80522002,80541672	80488148,80495283,80499985,80501917,80506076,80511086,80513769,80518930,80519910,80522138,80542042	0.823529
SJCRH30	chr7	101299593	101299635	101299612	+	High_confidence	9	12	89	4.932702	5.249493	chr7	101299646	101301210	LINE|L1|L1M2	+	chr7	101299577	101301346	LNCPRESS1|ENST00000429254.2	+	101299577,101300768	101299866,101301346	0.842697
SJCRH30	chr4	65998906	65998926	65998925	+	High_confidence	11	13	33	1.828980	3.919563	chr4	65993299	65999302	LINE|L1|L1PA2	-	chr4	65998845	66150012	AC116049.2|ENST00000508572.1	+	65998845,66122355,66135387,66149873	65999308,66122428,66135466,66150012	0.848485
SJCRH30	chr7	123211355	123211356	123211355	+	RAMPAGE_only	145	187	207	11.472690	5.271805	chr7	123211158	123211525	LTR|ERVL-MaLR|THE1D	+	chr7	123456628	123459856	AC073323.1|ENST00000419832.1	+	123456628,123457398,123459692	123456765,123457548,123459856	0.908213
SJCRH30	chr17	82081606	82081616	82081606	-	High_confidence	13	13	20	1.108472	3.208695	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.700000
SJCRH30	chr7	55157166	55157182	55157181	+	RAMPAGE_only	12	12	26	1.441014	3.973661	chr7	55157219	55157343	SINE|MIR|MIRb	+	chr7	55152336	55207337	EGFR|ENST00000638463.1	+	55152336,55152545,55154010,55155829,55156532,55156758,55157662,55160138,55161498,55163732,55165279,55171174,55172982,55173920,55174721,55181292,55191718,55192765,55198716,55200315,55201187,55201734,55202516,55205255	55152346,55152664,55154152,55155946,55156659,55156832,55157753,55160338,55161631,55163823,55165437,55171213,55173124,55174043,55174820,55181478,55191874,55192841,55198863,55200413,55201355,55201782,55202625,55207337	0.615385
SJCRH30	chr6	57961643	57961650	57961647	+	High_confidence	45	46	138	7.648460	5.951533	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961562	57973690	MSTRG.21779.3	+	57961562,57971594,57972093	57962248,57971656,57973690	0.920290
SJCRH30	chr11	111097287	111097338	111097337	-	High_confidence	23	26	100	5.542362	5.163370	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.870000
SJCRH30	chr5	143133720	143133723	143133722	+	High_confidence	8	11	13	0.720507	2.873141	chr5	143133666	143133819	LINE|CR1|L3b	+	chr5	143133984	143147516	ARHGAP26|ENST00000489924.1	+	143133984,143147230	143134105,143147516	0.692308
SJCRH30	chr4	21544609	21544692	21544670	-	High_confidence	10	10	34	1.884403	4.477025	chr4	21544311	21544682	LTR|ERVL-MaLR|MLT1E2	-	chr4	20728615	21544656	KCNIP4|NM_001035004.1	-	20728615,20732005,20732680,20734627,20749661,20758820,20850542,21544389	20730129,20732068,20732785,20734735,20749732,20758890,20850667,21544656	0.500000
SJCRH30	chr1	201427175	201427176	201427175	-	RAMPAGE_only	35	35	35	1.939827	4.378864	chr1	201427119	201427295	SINE|MIR|MIR	-	chr1	201408863	201429866	TNNI1|ENST00000336092.8	-	201408863,201410325,201411356,201413031,201414517,201415212,201417115,201417782,201421672,201427174,201428837,201429698	201409250,201410435,201411533,201413121,201414649,201415254,201417119,201417812,201421726,201427293,201429274,201429866	1.000000
SJCRH30	chr15	80059918	80059926	80059918	+	High_confidence	13	13	49	2.715758	3.869996	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.979592
SJCRH30	chr1	88647466	88647479	88647466	+	High_confidence	195	218	354	19.619962	5.720465	chr1	88647368	88647565	LTR|ERVL-MaLR|MLT1O	-	chr1	88647468	88804894	MSTRG.1206.1	+	88647468,88740987,88760221,88770351,88771420,88771662,88784638,88786103,88804390,88804845	88647638,88741288,88760376,88770469,88771566,88771879,88784824,88786213,88804534,88804894	0.895480
SJCRH30	chr10	124022235	124022267	124022235	-	RAMPAGE_only	8	8	38	2.106098	3.277037	chr10	124022190	124022584	LTR|ERV1|LTR54B	+	chr10	124021081	124038619	CHST15|ENST00000476765.1	-	124021081,124038514	124021412,124038619	0.921053
SJCRH30	chr4	102431179	102431181	102431179	-	High_confidence	6	11	13	0.720507	3.238901	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.923077
SJCRH30	chr16	87860503	87860531	87860527	-	RAMPAGE_only	15	27	78	4.323043	4.646525	chr16	87860400	87860678	LTR|ERV1|MER4B	+	chr16	87830022	87863639	SLC7A5|ENST00000565644.5	-	87830022,87834413,87836497,87837844,87838713,87839701,87840428,87841049,87851723,87863589	87833025,87834591,87836647,87837941,87838817,87839825,87840473,87841155,87851849,87863639	0.910256
SJCRH30	chr5	180830726	180830779	180830726	+	High_confidence	11	11	28	1.551861	3.753434	chr5	180830726	180830835	LTR|ERV1|MER67A	-	chr5	180830956	180835726	LINC00847|NR_045679.1	+	180830956,180832672,180834311	180831229,180832860,180835726	0.892857
SJCRH30	chr17	47067498	47067534	47067498	-	High_confidence	125	137	679	37.632640	5.787809	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.938144
SJCRH30	chr16	27229106	27229136	27229135	-	RAMPAGE_only	11	19	34	1.884403	4.265320	chr16	27229101	27229466	LINE|L2|L2b	+	chr16	27225143	27230839	NSMCE1|ENST00000565384.1	-	27225143,27225725,27226719,27230590	27225236,27225846,27226836,27230839	0.588235
SJCRH30	chr16	15518567	15518607	15518567	+	High_confidence	3	3	13	0.720507	2.873141	chr16	15518437	15518591	LTR|ERVL|LTR86C	-	chr16	15517978	15587964	MSTRG.9525.15	+	15517978,15567982,15581216,15583155,15586716	15518645,15568056,15581331,15583238,15587964	0.846154
SJCRH30	chr1	212792444	212792446	212792444	-	High_confidence	5	10	12	0.665083	2.522055	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.666667
SJCRH30	chr2	1740812	1740829	1740812	-	RAMPAGE_only	2	2	6	0.332542	2.584963	chr2	1740710	1740820	LINE|L2|L2b	+	chr2	1653075	1744442	PXDN|ENST00000433670.5	-	1653075,1654399,1660880,1662071,1663604,1664957,1666213,1673642,1676926,1680192,1683655,1684079,1687631,1691927,1693062,1744255	1653785,1654508,1661037,1662184,1663763,1665074,1666486,1673812,1677044,1680362,1683727,1684151,1687703,1691999,1693134,1744442	0.833333
SJCRH30	chr13	52570279	52570325	52570324	+	RAMPAGE_only	4	6	16	0.886778	3.106891	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.750000
SJCRH30	chr9	128921956	128921966	128921957	+	High_confidence	5	8	17	0.942202	2.875000	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.823529
SJCRH30	chr2	174748591	174748732	174748612	-	RAMPAGE_only	12	12	126	6.983376	5.242288	chr2	174748498	174748562	LINE|CR1|L3	-	chr2	174747659	174764461	CHRNA1|ENST00000261007.9	-	174747659,174748579,174749945,174753502,174754218,174757565,174757945,174759330,174759487,174764351	174748255,174748819,174750169,174753740,174754414,174757675,174758020,174759375,174759633,174764461	0.888889
SJCRH30	chr11	24932652	24932662	24932652	+	High_confidence	5	5	12	0.665083	2.688722	chr11	24931536	24933353	LINE|L1|L1PB1	-	chr11	24932541	25081104	MSTRG.3985.9	+	24932541,24976590,24983125,25050037,25077328,25078553	24932688,24976665,24983293,25050130,25077406,25081104	0.500000
SJCRH30	chr19	49086520	49086547	49086546	+	High_confidence	10	10	21	1.163896	4.021928	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.523810
SJCRH30	chr3	139344535	139344551	139344547	+	High_confidence	165	171	634	35.138577	5.772425	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.949527
SJCRH30	chr13	43348030	43348101	43348030	-	RAMPAGE_only	10	10	56	3.103723	4.587746	chr13	43347998	43348314	LINE|L2|L2c	+	chr13	43213524	43629477	ENOX1|NM_001127615.1	-	43213524,43224052,43236635,43265397,43269469,43298345,43322383,43326418,43344537,43355918,43359850,43361278,43411915,43412844,43484008,43609882,43629432	43214121,43224138,43236738,43265454,43269577,43298530,43322501,43326525,43344750,43356152,43360057,43361452,43412053,43412988,43484152,43609919,43629477	0.910714
SJCRH30	chr7	130366998	130367002	130366998	-	High_confidence	14	15	28	1.551861	3.554652	chr7	130366972	130367289	LTR|ERVL-MaLR|MLT1J2	-	chr7	130365649	130367127	LOC105375504|NR_133928.1	-	130365649,130366829	130365869,130367127	0.785714
SJCRH30	chr17	59620024	59620044	59620043	+	High_confidence	3	5	9	0.498813	2.750000	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59695112	MSTRG.11624.6	+	59619942,59644275,59647397,59648239,59651202,59655853,59660390,59661442,59663841,59664786,59666102,59666479,59666796,59668776,59673646,59674700,59676953,59679396,59680911,59681294,59681646,59682270,59682628,59682906,59683094,59683386,59683624,59683874,59685055,59685586,59687000,59690635,59693727	59620173,59644483,59647666,59648401,59651316,59656027,59660588,59661643,59663994,59664909,59666240,59666644,59666977,59668940,59673772,59674843,59677188,59679519,59681057,59681478,59681839,59682428,59682793,59683014,59683262,59683536,59683756,59683985,59685226,59685808,59687021,59690711,59695112	0.888889
SJCRH30	chr6	26474333	26474346	26474340	+	RAMPAGE_only	4	8	21	1.163896	4.201841	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.761905
SJCRH30	chr7	16348309	16348341	16348321	-	RAMPAGE_only	3	5	12	0.665083	2.845351	chr7	16347738	16351158	LINE|L1|L1M3de	+	chr7	16087526	16421322	ISPD|ENST00000407010.6	-	16087526,16216065,16258389,16258919,16278128,16301420,16308522,16376091,16406060,16421065	16091799,16216197,16258482,16259012,16278226,16301466,16308627,16376241,16406337,16421322	0.666667
SJCRH30	chr5	140700445	140700452	140700445	+	High_confidence	1387	1869	3930	217.814837	4.943550	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.983969
SJCRH30	chr8	32927967	32927984	32927976	+	High_confidence	210	234	471	26.104526	6.572942	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927973	33050637	MSTRG.23913.2	+	32927973,32996200,33041634,33044366	32928093,32996316,33041743,33050637	0.923567
SJCRH30	chr17	4143193	4143244	4143199	+	High_confidence	17	17	111	6.152022	4.941664	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.972973
SJCRH30	chr6	79631236	79631295	79631256	+	High_confidence	15	21	65	3.602535	4.114471	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
SJCRH30	chr7	101217578	101217599	101217580	-	High_confidence	10	17	39	2.161521	4.323613	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
SJCRH30	chr1	210439435	210439449	210439435	+	High_confidence	4	4	11	0.609660	3.095795	chr1	210438946	210439615	LTR|ERVL|ERVL-B4-int	-	chr1	210439582	210676296	HHAT|ENST00000367009.2	+	210439582,210464504,210513152,210587897,210623525,210674287	210439753,210464655,210513188,210588099,210623670,210676296	0.909091
SJCRH30	chr4	141332616	141332617	141332616	-	High_confidence	1209	1228	1681	93.167110	4.756375	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.976800
SJCRH30	chr8	27977125	27977126	27977125	-	High_confidence	260	286	309	17.125899	6.837863	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977118	MSTRG.23860.2	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977118	0.611650
SJCRH30	chr10	32446968	32446988	32446987	+	High_confidence	12	12	34	1.884403	3.782624	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.970588
SJCRH30	chr7	101308293	101308325	101308299	+	High_confidence	108	143	520	28.820284	6.492022	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.963462
SJCRH30	chr5	154924496	154924506	154924496	-	RAMPAGE_only	3	5	11	0.609660	2.732159	chr5	154924406	154924453	DNA|hAT-Charlie|MER30	-	chr5	154887415	154938209	GEMIN5|ENST00000285873.7	-	154887415,154889320,154891240,154892386,154896091,154898439,154899190,154901338,154902538,154903079,154904506,154905362,154907590,154911726,154912898,154916997,154917930,154919966,154921342,154924468,154925861,154927384,154928526,154931457,154932098,154935840,154937024,154937967	154888377,154889417,154891742,154892549,154896343,154898650,154899310,154901486,154902676,154903175,154904629,154905476,154907818,154911898,154913038,154917179,154918004,154920103,154921425,154924554,154926074,154927550,154928659,154931577,154932250,154936022,154937185,154938209	1.000000
SJCRH30	chrX	147937551	147937595	147937574	+	RAMPAGE_only	3	3	13	0.720507	2.873141	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.538462
SJCRH30	chr3	6507748	6507797	6507780	+	RAMPAGE_only	19	20	75	4.156772	5.122236	chr3	6507654	6507944	SINE|Alu|AluYi6	-	chr3	6490478	6736129	AC069277.1|ENST00000433639.1	+	6490478,6717568,6724449,6732270,6735661	6490672,6717667,6724546,6732495,6736129	0.546667
SJCRH30	chr2	231072254	231072255	231072254	+	RAMPAGE_only	4	4	7	0.387965	2.584963	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.857143
SJCRH30	chr7	111392932	111392959	111392958	-	High_confidence	6	6	14	0.775931	2.719295	chr7	111392522	111393282	LTR|ERVL|MER21C	-	chr7	110663425	111392915	IMMP2L|ENST00000450877.5	-	110663425,110886592,110963499,111391837,111392801	110663721,110886695,110963565,111392019,111392915	0.500000
SJCRH30	chr7	92906257	92906264	92906263	+	RAMPAGE_only	4	4	9	0.498813	2.500000	chr7	92906034	92906414	LTR|ERVL-MaLR|MSTA	+	chr7	92854908	92917174	AC002454.1|ENST00000419668.1	+	92854908,92855683,92916836	92854953,92855827,92917174	0.888889
SJCRH30	chr15	34588448	34588453	34588450	-	High_confidence	8	18	25	1.385591	4.003856	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.600000
SJCRH30	chr9	128921399	128921413	128921399	+	High_confidence	19	19	37	2.050674	4.571861	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.864865
SJCRH30	chr1	168786773	168786928	168786921	+	High_confidence	376	387	1117	61.908187	7.435998	chr1	168786791	168787303	LTR|ERVL-MaLR|MLT1L	+	chr1	168786938	168792886	LINC00626|ENST00000420691.1	+	168786938,168788780,168792330	168787228,168788889,168792886	0.934646
SJCRH30	chr22	20372696	20372718	20372698	-	High_confidence	14	20	57	3.159146	4.751651	chr22	20372309	20373771	LINE|L1|L1M3de	+	chr22	20350577	20372696	USP41|ENST00000486536.6	-	20350577,20363624,20364185,20366566,20367547,20369428,20370119,20372535	20350931,20363674,20364317,20366734,20367643,20369575,20370199,20372696	0.929825
SJCRH30	chr1	157274870	157274874	157274870	+	RAMPAGE_only	5	6	13	0.720507	3.022055	chr1	157274375	157275504	LTR|ERV1|HERVFH21-int	-	chr1	157280715	157283068	AL138900.3|ENST00000607010.1	+	157280715,157282577	157280853,157283068	0.769231
SJCRH30	chr22	25681501	25681547	25681515	+	RAMPAGE_only	67	84	302	16.737934	5.951138	chr22	25681501	25681690	LINE|L2|L2	-	chr22	25564929	25729294	MSTRG.16964.3	+	25564929,25644591,25661575,25663629,25667738,25672295,25674436,25678815,25679155,25685169,25687536,25690188,25695106,25703509,25704108,25709897,25711067,25714407,25718244,25721283,25722288	25565153,25644665,25661677,25663704,25667800,25672347,25674528,25678915,25681756,25685248,25687667,25690283,25695214,25703576,25704209,25709964,25711163,25714570,25718381,25721397,25729294	0.735099
SJCRH30	chr13	33818309	33818371	33818370	+	High_confidence	6	6	28	1.551861	4.085055	chr13	33818361	33818761	LINE|L2|L2a	-	chr13	33818068	33837507	RFC3|NM_002915.3	+	33818068,33821131,33823916,33825788,33829835,33830718,33831255,33835147,33836103	33818265,33821269,33823984,33825886,33830017,33830855,33831354,33835217,33837507	0.821429
SJCRH30	chr7	93591324	93591394	93591324	+	High_confidence	51	54	413	22.889956	5.567795	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591248	93911766	MSTRG.23090.1	+	93591248,93807203,93886505,93906738,93910789	93591771,93821759,93886549,93906842,93911766	0.915254
SJCRH30	chr7	150312046	150312047	150312046	-	RAMPAGE_only	13	13	13	0.720507	3.392747	chr7	150307703	150312283	LTR|ERV1|HERVH-int	+	chr7	150247211	150302980	ACTR3C|NM_001164459.1	-	150247211,150248947,150284752,150286366,150289449,150293311,150295251,150302841	150247569,150249054,150284845,150286540,150289593,150293419,150295347,150302980	0.846154
SJCRH30	chrX	283488	283509	283488	+	High_confidence	2	2	9	0.498813	3.169925	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.666667
SJCRH30	chrX	27398970	27398992	27398991	-	High_confidence	4	4	14	0.775931	3.180833	chrX	27398737	27399050	LINE|L1|L1MEf	+	chrX	27174919	27398997	AC107419.1|ENST00000422048.5	-	27174919,27186539,27265747,27336409,27398750,27398936	27176384,27186657,27265811,27336493,27398837,27398997	0.571429
SJCRH30	chr15	65244454	65244455	65244454	-	RAMPAGE_only	13	13	17	0.942202	3.155639	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.941176
SJCRH30	chr8	66926450	66926480	66926450	-	High_confidence	15	18	47	2.604910	3.806061	chr8	66926412	66926708	SINE|Alu|AluY	-	chr8	66922017	66926398	SNHG6|ENST00000520619.1	-	66922017,66922323,66922613,66926197	66922114,66922392,66922725,66926398	0.978723
SJCRH30	chrX	138990595	138990676	138990597	-	High_confidence	557	689	1274	70.609695	5.502923	chrX	138990423	138990790	LTR|ERVL-MaLR|THE1B	-	chrX	138635485	138990567	FGF13|ENST00000455663.5	-	138635485,138702983,138708817,138857511,138985017,138990507	138635655,138703087,138708928,138857679,138985091,138990567	0.965463
SJCRH30	chr17	29051968	29051990	29051984	+	High_confidence	52	54	160	8.867780	5.898531	chr17	29051982	29052110	SINE|MIR|MIRc	-	chr17	29051955	29053660	PIPOX|ENST00000419875.2	+	29051955,29052919,29053412	29052011,29053133,29053660	0.506250
SJCRH30	chr10	35412967	35412989	35412981	+	High_confidence	6	8	25	1.385591	3.621176	chr10	35412983	35413034	LINE|L2|L2a	+	chr10	35412906	35566285	MSTRG.2856.8	+	35412906,35483403,35501500,35516522,35525963,35529972,35530123,35553018,35566022	35413044,35483478,35501535,35516623,35525999,35530030,35530243,35553185,35566285	0.920000
SJSA1	chr1	162855770	162855781	162855780	-	High_confidence	18	27	40	2.628251	3.551205	chr1	162855777	162856190	LTR|ERVL-MaLR|MLT1B	+	chr1	162855088	162855946	CCDC190|ENST00000524710.1	-	162855088,162855631	162855359,162855946	0.825000
SJSA1	chr8	99892036	99892057	99892056	-	RAMPAGE_only	16	16	45	2.956783	4.091993	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
SJSA1	chr1	28506239	28506278	28506249	+	High_confidence	5	5	29	1.905482	3.935399	chr1	28506187	28506484	SINE|Alu|AluSx	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.655172
SJSA1	chr22	40653725	40653726	40653725	+	RAMPAGE_only	18	19	19	1.248419	2.621353	chr22	40653728	40654024	SINE|Alu|AluSg	+	chr22	41291623	41291928	MSTRG.22705.1	+	41291623	41291928	0.947368
SJSA1	chr8	102925026	102925070	102925069	+	High_confidence	18	22	86	5.650741	4.850034	chr8	102925075	102925163	DNA|hAT-Charlie|MER5B	+	chr8	102925052	102977738	MSTRG.32760.14	+	102925052,102927462,102930313,102937623,102941920,102977586	102925123,102927612,102930518,102937757,102942053,102977738	0.686047
SJSA1	chr7	134711498	134711504	134711503	+	High_confidence	144	147	366	24.048501	6.472594	chr7	134711275	134711628	LTR|ERVL|MLT2D	+	chr7	134711425	134968875	MSTRG.31429.1	+	134711425,134843883,134867692,134928753,134932987,134941091,134947507,134950373,134958068,134958208,134959973,134960532,134965305,134968553	134711597,134843971,134867804,134928900,134933390,134941237,134947769,134950514,134958112,134958290,134960111,134960628,134965386,134968875	0.926230
SJSA1	chr1	157273729	157273749	157273746	+	RAMPAGE_only	4	4	16	1.051301	2.952820	chr1	157273297	157273792	LTR|ERV1|LTR21A	-	chr1	157276043	157285131	MSTRG.2490.1	+	157276043,157280718,157282577	157276561,157280853,157285131	1.000000
SJSA1	chr8	53523963	53524006	53523963	-	High_confidence	30	31	85	5.585034	4.771150	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.964706
SJSA1	chr12	85660297	85660337	85660297	-	RAMPAGE_only	9	12	37	2.431133	4.026360	chr12	85659765	85660854	LTR|ERVL-MaLR|THE1B-int	+	chr12	85653274	85662246	MSTRG.8178.2	-	85653274,85660175,85661551	85660102,85660373,85662246	1.000000
SJSA1	chr9	32997349	32997350	32997349	-	High_confidence	8	10	10	0.657063	2.646439	chr9	32997347	32997748	LINE|L2|L2c	-	chr9	32972762	32997360	APTX|ENST00000479656.5	-	32972762,32974457,32984630,32985970,32987543,32988078,32989758,32997242	32973652,32974561,32984857,32986030,32987842,32988124,32989895,32997360	1.000000
SJSA1	chr6	125219777	125219816	125219777	+	High_confidence	60	68	109	7.161985	4.837962	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.963303
SJSA1	chrX	1679531	1679566	1679565	+	RAMPAGE_only	3	3	12	0.788475	2.855389	chrX	1679328	1679692	LTR|ERVL-MaLR|THE1B	+	chrX	1734116	1763212	AL683807.1|ENST00000432272.7	+	1734116,1755683,1762958	1734196,1755985,1763212	0.666667
SJSA1	chr8	53523862	53523891	53523890	-	High_confidence	3	3	11	0.722769	2.845351	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
SJSA1	chr1	235589035	235589065	235589035	-	High_confidence	4	4	29	1.905482	3.824863	chr1	235589032	235589593	LTR|ERVL|LTR18B	+	chr1	235551753	235588959	GNG4|ENST00000484517.2	-	235551753,235583739,235588868	235552237,235583848,235588959	0.758621
SJSA1	chr1	89272843	89272887	89272882	-	High_confidence	58	66	317	20.828893	5.606922	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	1.000000
SJSA1	chr5	128082249	128082276	128082249	-	High_confidence	7	9	35	2.299720	3.771143	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127966734	128082881	LINC01184|ENST00000508353.5	-	127966734,128076946,128082734	127966928,128077093,128082881	0.514286
SJSA1	chr11	78084584	78084599	78084584	-	RAMPAGE_only	11	11	19	1.248419	2.927451	chr11	78081299	78085065	LTR|ERV1|HERVH-int	+	chr11	78068303	78080219	NDUFC2|ENST00000281031.4	-	78068303,78072997,78079578	78070036,78073141,78080219	0.894737
SJSA1	chr8	68760073	68760122	68760112	+	High_confidence	22	23	107	7.030573	4.491389	chr8	68759841	68760175	LINE|L2|L2c	-	chr8	68760062	68818987	MSTRG.32414.9	+	68760062,68776398,68787442,68815885,68818238	68760184,68776449,68787536,68815945,68818987	0.850467
SJSA1	chr20	51862884	51862888	51862884	-	RAMPAGE_only	7	7	15	0.985594	2.788450	chr20	51862738	51863120	LTR|ERVL-MaLR|MLT1J	-	chr20	51782716	51802523	SALL4|NM_001318031.1	-	51782716,51788860,51791332,51802278	51784684,51789141,51792352,51802523	0.600000
SJSA1	chr3	12840635	12840636	12840635	-	High_confidence	12	12	13	0.854182	3.418296	chr3	12840594	12840703	SINE|MIR|MIRc	+	chr3	12834944	12840450	RPL32|NM_001007074.1	-	12834944,12839348,12840141	12836223,12839530,12840450	0.923077
SJSA1	chr1	157274734	157274758	157274744	+	RAMPAGE_only	4	5	16	1.051301	3.030639	chr1	157274375	157275504	LTR|ERV1|HERVFH21-int	-	chr1	157276043	157285131	MSTRG.2490.1	+	157276043,157280718,157282577	157276561,157280853,157285131	1.000000
SJSA1	chr4	122917828	122917856	122917834	-	RAMPAGE_only	152	178	364	23.917088	5.701870	chr4	122917758	122918008	LINE|L2|L2b	+	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	0.994505
SJSA1	chr1	238486001	238486035	238486003	-	High_confidence	10	19	62	4.073790	4.214030	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480383	238486017	LINC01139|NR_015407.1	-	238480383,238485784	238481681,238486017	0.612903
SJSA1	chr15	66502611	66502721	66502611	-	High_confidence	25	26	321	21.091718	6.038355	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.984424
SJSA1	chr2	240022172	240022269	240022181	-	RAMPAGE_only	8	11	64	4.205202	2.824808	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
SJSA1	chr2	111480260	111480288	111480260	-	High_confidence	39	44	76	4.993678	3.689013	chr2	111480041	111480456	LTR|ERVL-MaLR|MLT1C	-	chr2	111429322	111480261	MIR4435-2HG|ENST00000442293.5	-	111429322,111479906,111480168	111429620,111480061,111480261	0.855263
SJSA1	chr21	45563132	45563155	45563152	-	RAMPAGE_only	7	11	21	1.379832	3.010571	chr21	45562422	45564060	LINE|L1|L1MC3	+	chr21	45512361	45574348	MSTRG.22128.3	-	45512361,45514895,45525816,45530769,45531388,45537770,45562741,45573240	45513558,45516140,45525958,45530971,45532148,45538008,45562957,45574348	0.761905
SJSA1	chr2	74918040	74918041	74918040	+	High_confidence	10	10	14	0.919888	2.507380	chr2	74917679	74918502	LINE|L2|L2a	-	chr2	74918147	74932794	LINC01291|ENST00000435984.1	+	74918147,74931417,74932660	74918459,74931536,74932794	0.928571
SJSA1	chr4	88533222	88533246	88533222	-	RAMPAGE_only	36	36	78	5.125090	4.746234	chr4	88532886	88533429	LTR|ERVL|MLT2A2	-	chr4	88520984	88523813	PYURF|ENST00000273968.4	-	88520984,88523497	88522029,88523813	0.884615
SJSA1	chr14	35294432	35294454	35294432	+	RAMPAGE_only	2	2	8	0.525650	2.750000	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	1.000000
SJSA1	chr16	86222671	86222697	86222696	-	RAMPAGE_only	14	16	29	1.905482	3.158525	chr16	86222680	86222924	SINE|MIR|MIR	+	chr16	86221422	86286317	LINC01081|ENST00000602425.2	-	86221422,86222516,86225431,86225846,86226639,86269003,86275702,86286053	86221773,86222857,86225667,86225962,86226777,86269083,86275822,86286317	0.965517
SJSA1	chr6	128398114	128398131	128398123	-	RAMPAGE_only	6	6	25	1.642657	3.813661	chr6	128398008	128398465	LTR|ERV1|MER51A	-	chr6	128219069	128491857	PTPRK|ENST00000495748.5	-	128219069,128240034,128242520,128322038,128397565,128491731	128219096,128240150,128242602,128322310,128397688,128491857	0.880000
SJSA1	chr4	168138386	168138428	168138387	+	RAMPAGE_only	8	14	48	3.153902	4.096922	chr4	168138260	168138460	LINE|L1|L1PB4	-	chr4	168165183	168187690	ANXA10|ENST00000507278.5	+	168165183,168177739,168177889,168179216,168181682,168184558,168187365	168165326,168177793,168177983,168179312,168181741,168184681,168187690	0.958333
SJSA1	chr12	104280836	104280845	104280836	-	High_confidence	7	7	18	1.182713	3.461320	chr12	104280524	104280952	LTR|ERVL|MLT2D	+	chr12	104262313	104280722	AC089983.1|ENST00000549807.1	-	104262313,104280283	104262575,104280722	1.000000
SJSA1	chr4	114364914	114364967	114364914	-	High_confidence	257	284	799	52.499323	5.222236	chr4	114364772	114365325	LTR|ERVL-MaLR|MLT1E3	-	chr4	114334839	114364928	MSTRG.25643.3	-	114334839,114335128,114341283,114364807	114335026,114335244,114341349,114364928	0.929912
SJSA1	chr17	47067498	47067534	47067498	-	High_confidence	391	428	1276	83.841221	5.586721	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.934953
SJSA1	chr2	166182397	166182441	166182440	+	RAMPAGE_only	11	16	26	1.708363	3.522055	chr2	166180934	166182536	LINE|L1|L1P4d	+	chr2	166149180	166294588	AC010127.1|ENST00000630020.2	+	166149180,166171386,166199638,166248194,166249342,166251833,166277087,166294564	166149572,166171558,166199818,166248276,166249384,166251912,166277247,166294588	0.884615
SJSA1	chr2	218287239	218287280	218287279	-	High_confidence	30	31	85	5.585034	4.572134	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.870588
SJSA1	chr3	64341770	64341807	64341770	+	RAMPAGE_only	18	26	87	5.716447	4.885825	chr3	64341733	64341868	DNA|hAT-Charlie|MER5A	-	chr3	64347472	64347743	MSTRG.23623.1	+	64347472	64347743	0.701149
SJSA1	chr7	40808922	40808924	40808923	+	RAMPAGE_only	121	154	192	12.615607	5.275584	chr7	40808940	40809038	SINE|MIR|MIR3	+	chr7	40793333	40860763	MSTRG.30417.9	+	40793333,40860315	40793501,40860763	0.963542
SJSA1	chr15	96285409	96285490	96285467	-	RAMPAGE_only	10	23	103	6.767747	5.002877	chr15	96285441	96285601	LINE|RTE-BovB|MamRTE1	+	chr15	96266385	96282971	NR2F2-AS1|ENST00000561402.5	-	96266385,96269847,96271702,96282831	96266589,96269996,96271798,96282971	0.543689
SJSA1	chr10	93496875	93496920	93496875	+	High_confidence	3	5	26	1.708363	3.767183	chr10	93496847	93496980	SINE|MIR|MIRb	-	chr10	93496631	93529092	CEP55|ENST00000371485.7	+	93496631,93500039,93503112,93506987,93515404,93516934,93518876,93519681,93527949	93496923,93500234,93503388,93507056,93515555,93517248,93518948,93519807,93529092	1.000000
SJSA1	chr9	20732392	20732429	20732428	+	RAMPAGE_only	8	8	13	0.854182	2.507380	chr9	20732128	20733009	LINE|L2|L2b	-	chr9	20726350	20770133	FOCAD|ENST00000604103.1	+	20726350,20740235,20758089,20764873,20770031	20726432,20740340,20758191,20765073,20770133	1.000000
SJSA1	chr4	6673446	6673447	6673446	+	High_confidence	15	15	15	0.985594	2.840224	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	1.000000
SJSA1	chr19	48868595	48868637	48868613	-	High_confidence	289	327	1616	106.181358	7.347116	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.997525
SJSA1	chr17	41871756	41871832	41871831	-	RAMPAGE_only	4	4	22	1.445538	3.027169	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.863636
SJSA1	chr15	31357552	31357649	31357557	+	RAMPAGE_only	7	15	55	3.613846	3.971380	chr15	31357501	31358027	LINE|L1|HAL1	-	chr15	31366153	31372182	KLF13|ENST00000558844.1	+	31366153,31372009	31366554,31372182	0.781818
SJSA1	chr19	44626504	44626566	44626565	+	RAMPAGE_only	8	8	44	2.891077	3.466989	chr19	44626615	44626936	SINE|Alu|AluSz6	+	chr19	44613629	44636781	IGSF23|ENST00000402988.5	+	44613629,44623706,44627419,44635400,44636418	44613770,44623972,44627573,44635465,44636781	1.000000
SJSA1	chr18	7946878	7946898	7946878	+	High_confidence	9	9	21	1.379832	3.141619	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.952381
SJSA1	chr19	46180862	46180879	46180862	-	High_confidence	7	8	23	1.511245	2.963810	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46163892	46180647	AC006262.2|ENST00000599127.1	-	46163892,46164577,46173933,46179485,46180604	46164216,46164651,46174052,46179537,46180647	0.652174
SJSA1	chr12	57935528	57935539	57935528	-	High_confidence	6	7	16	1.051301	3.000000	chr12	57935455	57935567	LINE|L2|L2	+	chr12	57931568	57936059	AC084033.3|ENST00000547492.1	-	57931568,57935469	57931737,57936059	0.750000
SJSA1	chr5	10692513	10692514	10692513	-	RAMPAGE_only	32	37	47	3.088195	4.053965	chr5	10692464	10692728	LINE|CR1|L3	-	chr5	10680433	10761228	DAP|ENST00000432074.2	-	10680433,10748174,10761013	10681169,10748271,10761228	0.574468
SJSA1	chr11	69040836	69040905	69040904	-	High_confidence	9	10	48	3.153902	4.097794	chr11	69040894	69041715	LTR|ERVL|MER21C	+	chr11	69036959	69040962	MSTRG.6034.1	-	69036959,69040530	69037485,69040962	1.000000
SJSA1	chr2	33420625	33420657	33420656	-	High_confidence	114	120	355	23.325732	5.732982	chr2	33420256	33420773	LTR|ERVL-MaLR|MLT1G1	-	chr2	33411874	33420460	MSTRG.18786.1	-	33411874,33414632,33417996,33420173	33411965,33414947,33418027,33420460	0.912676
SJSA1	chr11	66438566	66438589	66438567	-	High_confidence	3	5	18	1.182713	2.565445	chr11	66438453	66438566	SINE|MIR|MIR	-	chr11	66435837	66438826	MRPL11|ENST00000534488.5	-	66435837,66437103,66437349,66438163,66438631	66436112,66437263,66437435,66438259,66438826	0.944444
SJSA1	chr5	77491258	77491291	77491258	-	High_confidence	2	3	13	0.854182	3.022055	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77449764	77492215	WDR41|ENST00000507452.5	-	77449764,77451290,77453816,77459061,77463094,77464760,77489456,77492169	77449870,77451346,77453928,77459124,77463226,77464809,77489572,77492215	0.846154
SJSA1	chr4	186487737	186487757	186487737	-	RAMPAGE_only	2	2	8	0.525650	2.500000	chr4	186487416	186487884	LTR|ERV1|MER34C_	+	chr4	186423727	186500997	F11-AS1|ENST00000508110.5	-	186423727,186424089,186426236,186431617,186432144,186500844	186423832,186424236,186427098,186431768,186432238,186500997	1.000000
SJSA1	chr8	461533	461559	461558	-	RAMPAGE_only	5	6	20	1.314126	3.521928	chr8	461265	461621	LTR|ERVL-MaLR|THE1B	-	chr8	450713	462712	MSTRG.31732.2	-	450713,461349	457100,462712	0.800000
SJSA1	chr17	19327364	19327395	19327368	+	RAMPAGE_only	15	15	38	2.496839	3.472034	chr17	19327394	19327680	SINE|Alu|AluJb	+	chr17	19312911	19331973	EPN2|ENST00000585097.1	+	19312911,19328710,19329560,19331852	19313020,19328887,19329647,19331973	0.973684
SJSA1	chr14	51554642	51554696	51554695	+	High_confidence	77	83	193	12.681313	5.926086	chr14	51553917	51555014	LINE|L1|L1MC3	+	chr14	51554659	51579297	FRMD6|ENST00000555952.5	+	51554659,51570347,51578971	51554805,51570410,51579297	0.518135
SJSA1	chr16	86225932	86226002	86225951	-	High_confidence	6	7	25	1.642657	3.047210	chr16	86225828	86225915	LINE|L2|L2a	-	chr16	86222565	86226698	MSTRG.13855.2	-	86222565,86225846,86226639	86222857,86225962,86226698	0.680000
SJSA1	chr9	87874133	87874169	87874133	+	RAMPAGE_only	17	17	37	2.431133	3.841097	chr9	87874022	87874740	LTR|ERV1|LTR76	+	chr9	87876058	87879021	MSTRG.33702.1	+	87876058,87878561	87876293,87879021	1.000000
SJSA1	chr12	52201517	52201609	52201608	+	High_confidence	10	10	87	5.716447	4.762167	chr12	52201520	52201894	LTR|ERVL-MaLR|MLT1D	+	chr12	52201765	52223637	MSTRG.7702.2	+	52201765,52223445	52201884,52223637	0.620690
SJSA1	chr17	31059092	31059124	31059123	-	High_confidence	49	66	172	11.301481	5.696155	chr17	31058907	31059133	LINE|L1|L1MC5a	+	chr17	31034145	31059121	MSTRG.14735.1	-	31034145,31038573,31039304,31042198,31045209,31058763	31034810,31038654,31039374,31042270,31045281,31059121	0.773256
SJSA1	chr22	27226716	27226794	27226716	-	RAMPAGE_only	4	4	41	2.693958	4.143943	chr22	27226424	27226975	LTR|ERVL-MaLR|MLT1F2	-	chr22	27221348	27224727	LINC01638|ENST00000444114.5	-	27221348,27224229,27224522	27221701,27224308,27224727	0.707317
SJSA1	chr10	103181328	103181329	103181328	-	High_confidence	10	10	10	0.657063	2.921928	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103181359	MSTRG.4690.1	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857,103181184	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982,103181359	0.700000
SJSA1	chr12	6783579	6783580	6783579	+	RAMPAGE_only	12	13	13	0.854182	2.815072	chr12	6783596	6783716	SINE|MIR|MIRc	+	chr12	6867118	6870948	TPI1|ENST00000229270.8	+	6867118,6868863,6869098,6869257,6869687,6870048,6870264	6867681,6868987,6869183,6869390,6869773,6870136,6870948	1.000000
SJSA1	chr5	151676451	151676496	151676459	-	RAMPAGE_only	4	4	18	1.182713	3.175123	chr5	151676278	151676631	DNA|hAT-Charlie|MER113	+	chr5	151667473	151671829	SPARC|ENST00000524277.1	-	151667473,151669663,151671572	151667600,151669784,151671829	0.555556
SJSA1	chr17	49646371	49646401	49646400	-	High_confidence	3	4	10	0.657063	3.169925	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49607249	49646622	MSTRG.15327.10	-	49607249,49607873,49611279,49612778,49618503,49618980,49619233,49621945,49622732,49646115	49607372,49607929,49611457,49612941,49618563,49619108,49619385,49622067,49622876,49646622	0.900000
SJSA1	chr6	144533105	144533127	144533126	+	RAMPAGE_only	5	7	19	1.248419	2.610064	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	1.000000
SJSA1	chr9	106278141	106278227	106278220	+	High_confidence	74	78	454	29.830654	6.578373	chr9	106277947	106278267	LINE|RTE-X|L4_C_Mam	+	chr9	106278173	106604486	MSTRG.33948.5	+	106278173,106279094,106499486,106500356,106558471,106588379,106603755	106278472,106279190,106499612,106500505,106558583,106588464,106604486	0.876652
SJSA1	chr19	3062782	3062823	3062822	-	High_confidence	10	10	55	3.613846	4.098717	chr19	3062800	3062899	SINE|MIR|MIRc	+	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.963636
SJSA1	chr1	174803935	174803936	174803935	+	RAMPAGE_only	18	18	18	1.182713	3.350209	chr1	174803790	174804067	SINE|Alu|AluSx1	+	chr1	174999162	175011715	CACYBP|ENST00000613570.4	+	174999162,175004613,175006744,175007097,175008608,175009922	174999689,175004833,175006841,175007197,175008706,175011715	1.000000
SJSA1	chr14	100897920	100897921	100897920	+	High_confidence	8	8	10	0.657063	2.646439	chr14	100897872	100897994	LINE|L1|L1ME5	+	chr14	100897948	100928615	MEG8|ENST00000553465.5	+	100897948,100898956,100906097,100906935,100910232,100913431,100928098	100898053,100899085,100906163,100907132,100910304,100913521,100928615	0.600000
SJSA1	chr9	63057041	63057059	63057058	+	RAMPAGE_only	5	6	9	0.591357	2.503258	chr9	63056988	63057305	SINE|Alu|AluSx	-	chr9	63055640	63059217	BMS1P9|ENST00000457640.1	+	63055640,63055922,63056349,63057514,63058551,63059041	63055838,63056103,63056408,63057637,63058699,63059217	1.000000
SJSA1	chr11	86395147	86395174	86395173	+	High_confidence	14	15	43	2.825370	3.986354	chr11	86395046	86395200	DNA|TcMar-Mariner|MARNA	+	chr11	86395173	86423109	CCDC81|ENST00000528728.1	+	86395173,86397620,86400677,86407613,86409260,86412386,86414788,86415092,86419927,86422573	86395413,86397742,86400801,86407701,86409365,86412559,86414867,86415313,86420053,86423109	1.000000
SJSA1	chr3	9986898	9986916	9986898	+	High_confidence	10	11	42	2.759664	4.540240	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986897	10006870	MSTRG.22941.2	+	9986897,9987814,9988711,9998775,10002716	9987264,9987905,9988747,9998899,10006870	0.976190
SJSA1	chr10	119803513	119803538	119803537	+	RAMPAGE_only	12	12	19	1.248419	3.836592	chr10	119803193	119803942	LINE|L1|L1M5	-	chr10	119750876	119828360	INPP5F|ENST00000647699.1	+	119750876,119781634,119791516,119791868,119792156,119796714,119797460,119798542,119804172,119805383,119806359,119807931,119810099,119811756,119820845,119822430,119823070,119823814,119826630	119751156,119781771,119791645,119792036,119792213,119796913,119797640,119798610,119804297,119805461,119806480,119808060,119810217,119811955,119820917,119822504,119823199,119823902,119828360	0.789474
SJSA1	chr20	3795750	3795789	3795788	+	High_confidence	55	61	342	22.471550	5.199818	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795758	3806015	MSTRG.20994.4	+	3795758,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801982,3802280,3802909,3803107,3803403,3804568,3804820	3795879,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806015	0.973684
SJSA1	chr10	122852351	122852363	122852351	-	High_confidence	102	105	162	10.644418	4.697611	chr10	122852085	122852506	LINE|L1|L1MCa	+	chr10	122832148	122852360	MSTRG.4874.1	-	122832148,122833671,122834705,122836177,122836830,122837403,122839016,122841177,122845761,122849236,122850423,122852328	122832450,122833940,122835097,122836350,122837048,122837554,122839231,122841328,122846220,122849439,122850550,122852360	0.895062
SJSA1	chr5	74715622	74715690	74715689	+	High_confidence	8	8	34	2.234014	4.101881	chr5	74715734	74716041	SINE|Alu|AluSx1	+	chr5	74715585	74721288	HEXB|ENST00000513336.5	+	74715585,74718290,74718796,74720427,74720642,74721117	74715690,74718363,74718971,74720518,74720747,74721288	1.000000
SJSA1	chr16	25148933	25148943	25148942	-	High_confidence	13	16	25	1.642657	3.970176	chr16	25148832	25149129	LTR|ERV1|LTR35	-	chr16	25140570	25149032	LCMT1-AS2|NR_039998.1	-	25140570,25146247,25148705	25140858,25148239,25149032	0.960000
SJSA1	chr17	4143196	4143215	4143199	+	High_confidence	60	61	150	9.855943	4.828052	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	1.000000
SJSA1	chr15	62894596	62894597	62894596	+	RAMPAGE_only	9	9	13	0.854182	2.873141	chr15	62894534	62894826	SINE|Alu|AluSx3	+	chr15	62895811	62899543	AC103740.2|ENST00000557900.1	+	62895811,62898650	62896143,62899543	1.000000
SJSA1	chr1	6208681	6208682	6208681	-	High_confidence	60	60	61	4.008083	3.724431	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.934426
SJSA1	chr21	33945809	33945810	33945809	-	RAMPAGE_only	9	9	9	0.591357	2.503258	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
SJSA1	chr3	134485387	134485471	134485387	-	High_confidence	10	11	76	4.993678	4.492228	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.973684
SJSA1	chr2	230961191	230961201	230961200	-	High_confidence	9	12	24	1.576951	3.368523	chr2	230960613	230961268	LINE|L1|L1MCb	+	chr2	230909865	230961066	GPR55|ENST00000392039.2	-	230909865,230960774	230911096,230961066	0.833333
SJSA1	chr8	73124013	73124033	73124032	-	High_confidence	15	22	33	2.168307	3.510176	chr8	73123782	73124267	LTR|ERVK|MER9B	-	chr8	73066531	73124088	SBSPON|ENST00000519697.1	-	73066531,73069804,73071779,73081018,73123506	73067458,73069981,73071870,73081213,73124088	1.000000
SJSA1	chr21	29434287	29434289	29434288	+	RAMPAGE_only	11	16	23	1.511245	3.046381	chr21	29434091	29434453	LTR|ERVL-MaLR|THE1B	+	chr21	29327275	29630751	BACH1|ENST00000468059.1	+	29327275,29329486,29597569,29630538	29327393,29329693,29597694,29630751	0.739130
SJSA1	chr17	59619874	59619923	59619894	+	High_confidence	708	923	3859	253.560558	6.009649	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.981342
SJSA1	chr3	188153195	188153237	188153195	+	High_confidence	8	8	25	1.642657	3.733661	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.960000
SJSA1	chr12	55516318	55516319	55516318	+	RAMPAGE_only	9	9	9	0.591357	2.725481	chr12	55515725	55517184	LINE|L1|L1M1	+	chr12	56158160	56161574	MYL6|ENST00000550697.5	+	56158160,56158683,56159586,56159974,56160242,56160625,56161386	56158404,56158711,56159730,56160148,56160320,56160670,56161574	1.000000
SJSA1	chr6	125219905	125220006	125219965	+	High_confidence	76	82	239	15.703802	5.859716	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	1.000000
SJSA1	chr1	157273788	157273903	157273902	+	RAMPAGE_only	9	9	68	4.468027	4.809612	chr1	157273792	157274117	LTR|ERV1|HERVFH21-int	-	chr1	157276043	157285131	MSTRG.2490.1	+	157276043,157280718,157282577	157276561,157280853,157285131	0.985294
SJSA1	chr15	82093492	82093493	82093492	+	RAMPAGE_only	13	17	17	1.117007	3.219528	chr15	82093373	82093640	LTR|ERVL-MaLR|MLT1A0	-	chr15	82088632	82095707	LINC01583|ENST00000559788.1	+	82088632,82091726,82095481	82088728,82091935,82095707	0.705882
SJSA1	chr22	39062500	39062591	39062522	-	High_confidence	258	284	1206	79.241781	5.175541	chr22	39057552	39062558	LTR|ERV1|HERVH-int	-	chr22	39047883	39062581	MSTRG.22642.1	-	39047883,39049546,39050087,39057742,39060699,39062417	39048087,39049625,39050186,39057919,39060892,39062581	0.960199
SJSA1	chr17	9519325	9519347	9519325	-	RAMPAGE_only	7	7	16	1.051301	2.780639	chr17	9519225	9520136	LINE|L2|L2c	+	chr17	9250506	9575811	STX8|ENST00000575294.6	-	9250506,9378551,9491828,9568370,9575791	9250645,9378653,9491921,9568470,9575811	0.750000
SJSA1	chr19	9140390	9140428	9140390	+	High_confidence	18	18	58	3.810965	4.519210	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.879310
SJSA1	chr11	96506918	96506928	96506918	-	RAMPAGE_only	20	22	33	2.168307	4.171465	chr11	96506660	96506968	LTR|ERV1|LTR46-int	+	chr11	96352775	96389954	CCDC82|ENST00000646818.1	-	96352775,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529,96389843	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387613,96389954	0.606061
SJSA1	chr11	72111474	72111497	72111496	-	High_confidence	6	8	13	0.854182	3.085055	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	1.000000
SJSA1	chr7	40793421	40793455	40793452	+	High_confidence	53	56	372	24.442738	5.298554	chr7	40793443	40794845	LINE|L1|L1MEd	-	chr7	40793333	40860763	MSTRG.30417.9	+	40793333,40860315	40793501,40860763	0.978495
SJSA1	chr2	186602121	186602132	186602121	+	RAMPAGE_only	4	6	19	1.248419	2.863826	chr2	186602116	186602175	LINE|RTE-BovB|MamRTE1	-	chr2	186600204	186677441	ITGAV|ENST00000433736.6	+	186600204,186602020,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186600381,186602151,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186677441	0.947368
SJSA1	chr4	25861730	25861747	25861746	+	High_confidence	38	44	79	5.190797	4.763394	chr4	25861658	25861751	DNA|hAT?|UCON80	+	chr4	25861829	25929545	SMIM20|ENST00000515764.2	+	25861829,25928312,25929153	25862153,25928369,25929545	0.797468
SJSA1	chr16	4355592	4355593	4355592	-	High_confidence	579	625	630	41.394960	4.537753	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.984127
SJSA1	chr11	14337139	14337157	14337156	-	High_confidence	4	4	14	0.919888	2.873141	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.857143
SJSA1	chr2	3536857	3536889	3536874	-	High_confidence	9	9	29	1.905482	3.315600	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	1.000000
SJSA1	chr5	172954054	172954094	172954054	+	RAMPAGE_only	11	11	39	2.562545	3.776450	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172958728	172969716	RPL26L1|ENST00000519974.5	+	172958728,172959864,172968458,172969412	172958801,172960041,172968599,172969716	0.974359
SJSA1	chr5	140700445	140700455	140700451	+	High_confidence	1078	1152	3894	255.860278	4.658022	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.979969
SJSA1	chr3	11225975	11226026	11225975	+	High_confidence	12	12	68	4.468027	4.624742	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11225982	11263253	HRH1|NM_001098211.1	+	11225982,11259002	11226059,11263253	0.735294
SJSA1	chr1	225774907	225774936	225774924	+	RAMPAGE_only	5	9	24	1.576951	2.892080	chr1	225774781	225775174	LTR|ERVL-MaLR|MSTA	+	chr1	225777812	225790466	SRP9|NM_001130440.1	+	225777812,225783299,225786861,225789239	225778012,225783368,225786985,225790466	0.916667
SJSA1	chr13	113185934	113185995	113185994	-	High_confidence	12	14	81	5.322209	4.668369	chr13	113185974	113186050	SINE|Alu|Alu	+	chr13	113177612	113185886	MSTRG.9665.10	-	113177612,113178965,113179916,113180157,113181129,113184345,113185484,113185748	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113185886	0.975309
SJSA1	chr18	48621506	48621539	48621524	+	High_confidence	64	94	368	24.179913	6.459605	chr18	48621468	48621857	LINE|L2|L2a	-	chr18	48621514	48862924	MSTRG.16484.9	+	48621514,48636613,48663751,48664446,48670668,48711618,48757918,48761389,48817220,48857587,48859343	48621641,48636685,48663825,48664551,48670744,48711695,48758405,48761689,48817376,48857641,48862924	0.923913
SJSA1	chr15	34588450	34588453	34588450	-	High_confidence	15	28	34	2.234014	3.833663	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.911765
SJSA1	chr7	99410045	99410146	99410089	+	High_confidence	6	6	36	2.365426	4.051462	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	1.000000
SJSA1	chr3	157533596	157533615	157533600	-	High_confidence	142	156	285	18.726292	5.630058	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157460214	157533606	VEPH1|ENST00000487753.5	-	157460214,157470313,157495211,157533512	157460355,157470529,157495506,157533606	0.968421
SJSA1	chr12	57532020	57532095	57532080	-	RAMPAGE_only	13	15	73	4.796559	4.660744	chr12	57531960	57532134	LINE|RTE-BovB|MamRTE1	+	chr12	57530310	57547141	DCTN2|ENST00000434715.7	-	57530310,57532014,57532212,57532571,57532732,57532983,57533237,57533952,57534291,57535055,57535483,57535748,57538518,57541363,57546027,57547027	57530775,57532106,57532315,57532643,57532810,57533022,57533303,57534097,57534452,57535154,57535545,57535845,57538524,57541372,57546096,57547141	0.821918
SJSA1	chr1	147173203	147173261	147173225	+	High_confidence	8	10	42	2.759664	3.908695	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.952381
SJSA1	chr8	121144996	121145099	121145042	-	High_confidence	42	47	257	16.886516	4.227229	chr8	121144690	121145135	LTR|ERVL|MLT2A2	-	chr8	121140048	121145241	MSTRG.32888.1	-	121140048,121144776	121140294,121145241	0.980545
SJSA1	chr16	87860502	87860542	87860541	-	RAMPAGE_only	8	8	34	2.234014	3.189750	chr16	87860400	87860678	LTR|ERV1|MER4B	+	chr16	87830022	87863639	SLC7A5|ENST00000565644.5	-	87830022,87834413,87836497,87837844,87838713,87839701,87840428,87841049,87851723,87863589	87833025,87834591,87836647,87837941,87838817,87839825,87840473,87841155,87851849,87863639	1.000000
SJSA1	chr18	46087042	46087066	46087042	-	High_confidence	14	15	43	2.825370	3.879071	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.930233
SJSA1	chr17	76773073	76773113	76773076	+	High_confidence	7	9	27	1.774070	3.606015	chr17	76772816	76773304	LINE|L1|L1MEc	-	chr17	76773096	76778338	MFSD11|ENST00000590070.1	+	76773096,76774996,76776405,76778187	76773351,76775171,76776541,76778338	0.962963
SJSA1	chr9	40574018	40574046	40574018	-	High_confidence	23	29	133	8.738936	5.589135	chr9	40573772	40574083	SINE|Alu|AluSx	+	chr9	40571448	40574027	MSTRG.33526.1	-	40571448,40572388,40573450,40573929	40572046,40572536,40573573,40574027	0.563910
SJSA1	chr12	121950291	121950309	121950291	+	High_confidence	85	85	172	11.301481	5.532095	chr12	121949929	121950482	LINE|L1|L1MB5	+	chr12	121950311	121969966	MSTRG.8673.19	+	121950311,121951479,121954119,121957073,121958271,121958942,121960584,121961977,121966954,121968005,121969681	121950336,121951530,121954334,121957268,121958522,121959094,121960758,121962162,121967069,121968169,121969966	0.941860
SJSA1	chr1	39026130	39026205	39026130	+	High_confidence	12	13	45	2.956783	4.172207	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
SJSA1	chr5	55851351	55851383	55851353	+	High_confidence	14	26	82	5.387915	4.956198	chr5	55851124	55851720	DNA|TcMar-Tigger|Tigger17a	-	chr5	55851378	55922854	IL31RA|NM_001242638.1	+	55851378,55852194,55853321,55859508,55868790,55872269,55883043,55889969,55896349,55899915,55906105,55907358,55908264,55910531,55913476,55914846,55916643,55922395	55851633,55852312,55853567,55859599,55868908,55872451,55883195,55890135,55896429,55900132,55906288,55907460,55908411,55910672,55913570,55914928,55916834,55922854	0.695122
SJSA1	chr17	48199387	48199425	48199424	-	RAMPAGE_only	10	10	56	3.679552	3.934797	chr17	48199174	48199607	LINE|L2|L2c	+	chr17	48180091	48185179	SKAP1|ENST00000579336.1	-	48180091,48182393,48184722	48180248,48182457,48185179	0.946429
SJSA1	chr7	7157347	7157371	7157370	+	RAMPAGE_only	15	15	29	1.905482	3.483005	chr7	7157366	7157507	LINE|L1|L1M8	-	chr7	7182614	7248647	C1GALT1|ENST00000436587.6	+	7182614,7234302,7238254,7243523	7182820,7234539,7238922,7248647	0.827586
SJSA1	chr19	3062917	3062978	3062922	-	High_confidence	44	56	198	13.009845	5.040435	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	1.000000
SJSA1	chr4	86453202	86453309	86453231	-	High_confidence	21	22	195	12.812726	4.967787	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016153	86453225	MAPK10|ENST00000639972.2	-	86016153,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194308,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453225	0.917949
SJSA1	chr1	67791722	67791754	67791731	-	High_confidence	133	136	435	28.582234	5.936273	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701465	67791787	MSTRG.1388.2	-	67701465,67707593,67777457,67791642	67705576,67707712,67777507,67791787	0.972414
SJSA1	chr2	200887991	200888000	200887991	-	High_confidence	5	6	14	0.919888	2.664498	chr2	200887775	200888074	SINE|Alu|AluSx1	+	chr2	200871151	200887687	PPIL3|ENST00000415562.5	-	200871151,200876918,200881420,200882341,200885697,200887612	200871521,200877037,200881488,200882382,200885772,200887687	0.500000
SJSA1	chrX	16712906	16712959	16712906	-	High_confidence	5	5	30	1.971189	3.667315	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.833333
SJSA1	chr13	110179288	110179344	110179297	-	RAMPAGE_only	11	11	44	2.891077	4.001728	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	0.909091
SJSA1	chr8	53945315	53945316	53945315	+	High_confidence	19	19	24	1.576951	3.083765	chr8	53944745	53945626	LINE|L1|L1MB7	+	chr8	53945324	53958697	RGS20|ENST00000517405.1	+	53945324,53946664,53954075,53958269	53945370,53946748,53954310,53958697	0.833333
SJSA1	chr1	210439448	210439451	210439448	+	High_confidence	16	16	29	1.905482	4.237291	chr1	210438946	210439615	LTR|ERVL|ERVL-B4-int	-	chr1	210439329	210676296	MSTRG.3087.10	+	210439329,210464504,210513152,210587897,210623525,210674287	210439478,210464655,210513188,210588099,210623670,210676296	0.793103
SJSA1	chr5	95713508	95713522	95713508	+	RAMPAGE_only	8	11	24	1.576951	2.979659	chr5	95713280	95713670	LTR|ERVL-MaLR|MSTA	+	chr5	95717632	95756093	RHOBTB3|ENST00000504949.1	+	95717632,95731858,95736888,95748332,95752238,95755395	95717765,95732084,95737075,95748487,95752350,95756093	0.958333
SJSA1	chr8	462862	462863	462862	+	RAMPAGE_only	10	12	14	0.919888	2.896292	chr8	462602	462908	LINE|L1|L1PB3	+	chr8	413071	469873	FBXO25|ENST00000276326.9	+	413071,431340,435614,449989,451268,458368,463006,468714	413213,431444,435707,450083,451453,458551,463150,469873	0.928571
SJSA1	chr8	121144926	121144933	121144926	-	High_confidence	3	3	7	0.459944	2.521641	chr8	121144690	121145135	LTR|ERVL|MLT2A2	-	chr8	121140048	121145241	MSTRG.32888.1	-	121140048,121144776	121140294,121145241	1.000000
SJSA1	chr12	52201714	52201801	52201726	+	RAMPAGE_only	26	41	130	8.541817	4.612461	chr12	52201520	52201894	LTR|ERVL-MaLR|MLT1D	+	chr12	52210929	52223813	LINC00592|NR_027358.1	+	52210929,52212043,52212598,52221976,52223445	52211020,52212156,52213027,52222028,52223813	1.000000
SJSA1	chr1	54413473	54413493	54413492	-	High_confidence	8	10	19	1.248419	2.865577	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54243236	54413479	SSBP3|ENST00000525990.1	-	54243236,54251615,54251793,54257126,54281437,54401860,54404575,54404857,54413355	54243299,54251692,54251860,54257186,54281527,54401945,54404637,54404930,54413479	0.526316
SJSA1	chr1	225774965	225774970	225774967	+	RAMPAGE_only	14	21	40	2.628251	4.096568	chr1	225774781	225775174	LTR|ERVL-MaLR|MSTA	+	chr1	225777812	225790466	SRP9|NM_001130440.1	+	225777812,225783299,225786861,225789239	225778012,225783368,225786985,225790466	0.875000
SJSA1	chr6	2972164	2972206	2972164	-	High_confidence	5	6	20	1.314126	3.146439	chr6	2971942	2972236	SINE|Alu|AluSz	+	chr6	2948158	2972165	SERPINB6|NM_001297699.1	-	2948158,2948913,2953043,2954591,2955523,2959167,2971247	2948699,2949069,2953186,2954709,2955670,2959342,2972165	1.000000
SJSA1	chr11	78084501	78084534	78084501	-	RAMPAGE_only	8	8	23	1.511245	2.844032	chr11	78081299	78085065	LTR|ERV1|HERVH-int	+	chr11	78068303	78080219	NDUFC2|ENST00000281031.4	-	78068303,78072997,78079578	78070036,78073141,78080219	0.956522
SJSA1	chr7	2242922	2242923	2242922	+	High_confidence	19	19	19	1.248419	3.426367	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
SJSA1	chr3	135965670	135965744	135965718	+	High_confidence	12	12	117	7.687635	5.324559	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.957265
SJSA1	chr8	143281636	143281687	143281686	-	High_confidence	24	26	130	8.541817	4.485736	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.723077
SJSA1	chr11	126648079	126648089	126648088	+	High_confidence	7	9	14	0.919888	2.873141	chr11	126647942	126648306	LTR|ERVL-MaLR|MSTA	+	chr11	126648129	126682103	MSTRG.6768.1	+	126648129,126652780,126681782	126648229,126652929,126682103	0.714286
SJSA1	chr6	79631239	79631295	79631294	+	High_confidence	6	6	25	1.642657	3.383465	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
SJSA1	chr11	66480713	66480723	66480713	+	High_confidence	4	4	14	0.919888	2.753434	chr11	66480761	66480844	SINE|MIR|MIRc	+	chr11	66480740	66482470	DPP3|ENST00000531314.1	+	66480740,66482192	66481025,66482470	1.000000
SJSA1	chr3	46163808	46163816	46163808	+	RAMPAGE_only	5	5	14	0.919888	2.699514	chr3	46161736	46164342	LINE|L1|L1PA12	-	chr3	46189555	46189979	MSTRG.23316.1	+	46189555	46189979	0.928571
SJSA1	chr1	151166642	151166683	151166642	+	High_confidence	22	25	164	10.775831	5.231688	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	1.000000
SJSA1	chr8	68989308	68989539	68989476	+	High_confidence	203	258	1794	117.877077	7.811251	chr8	68989355	68989582	LTR|ERVL|LTR16B1	+	chr8	68989355	69034307	MSTRG.32418.2	+	68989355,69029907,69034208	68989790,69030712,69034307	0.644928
SJSA1	chr7	48000215	48000235	48000215	-	High_confidence	1011	1096	3579	235.162798	6.386527	chr7	48000133	48000438	SINE|Alu|AluSx	-	chr7	47987147	48000231	MSTRG.30503.1	-	47987147,47988787,47991009,47993051,47994314,47996030,48000127	47987449,47988880,47991045,47993076,47994482,47996146,48000231	0.949427
SJSA1	chr18	36805376	36805404	36805392	-	RAMPAGE_only	3	3	11	0.722769	2.721928	chr18	36805277	36805349	LINE|L2|L2b	-	chr18	36796071	36828963	TPGS2|ENST00000593035.5	-	36796071,36798448,36800197,36805373,36807846,36818893,36828682	36797050,36798609,36800311,36805397,36807934,36818973,36828963	0.818182
SJSA1	chr14	65285119	65285134	65285131	+	RAMPAGE_only	5	5	13	0.854182	2.625815	chr14	65284944	65285417	LTR|ERVL-MaLR|MLT1C	+	chr14	65410591	65744121	FUT8|NM_178156.2	+	65410591,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65411993,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65744121	0.923077
SJSA1	chr5	9950097	9950098	9950097	+	RAMPAGE_only	6	6	6	0.394238	2.584963	chr5	9950117	9950562	LTR|ERVL-MaLR|MLT1C	+	chr5	10249920	10266412	CCT5|NM_001306153.1	+	10249920,10254144,10254673,10255954,10258110,10258385,10260791,10261559,10262480,10263133,10264655	10250045,10254205,10254838,10256153,10258303,10258535,10260911,10261745,10262618,10263314,10266412	1.000000
SJSA1	chr4	56487576	56487654	56487652	+	RAMPAGE_only	11	20	109	7.161985	5.164753	chr4	56487644	56487802	SINE|MIR|MIR3	+	chr4	56489061	56495392	SRP72|ENST00000647432.1	+	56489061,56490332,56490567,56491430,56495356	56489483,56490436,56490645,56491568,56495392	0.798165
SJSA1	chr13	99496638	99496639	99496638	-	RAMPAGE_only	13	13	13	0.854182	2.777363	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99486961	99499306	LINC01232|NR_110731.1	-	99486961,99496134,99496374,99497248,99498685	99487816,99496217,99496544,99497336,99499306	0.615385
SJSA1	chr5	172954196	172954273	172954206	+	RAMPAGE_only	12	13	67	4.402321	3.987744	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172958728	172969716	RPL26L1|ENST00000519974.5	+	172958728,172959864,172968458,172969412	172958801,172960041,172968599,172969716	0.970149
SJSA1	chr3	114624940	114625007	114625006	-	High_confidence	38	41	175	11.498600	4.673318	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.897143
SJSA1	chr6	52423704	52423715	52423714	+	High_confidence	25	31	73	4.796559	4.368347	chr6	52423684	52423805	SINE|Alu|AluJb	-	chr6	52423694	52493402	MSTRG.28880.33	+	52423694,52423945,52438303,52452687,52464894,52469332,52479036,52479639,52490139,52492269	52423828,52424167,52438591,52454287,52465115,52469473,52479250,52479787,52490350,52493402	1.000000
SJSA1	chr7	137254906	137254969	137254947	-	RAMPAGE_only	15	15	54	3.548139	3.700523	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	1.000000
SJSA1	chr13	89551175	89551198	89551175	-	RAMPAGE_only	3	3	17	1.117007	3.337175	chr13	89550569	89551274	LTR|ERV1|LTR12_	+	chr13	89477606	89500509	LINC01040|NR_131228.1	-	89477606,89500373	89478137,89500509	0.941176
SJSA1	chr13	30743879	30743906	30743879	+	RAMPAGE_only	4	5	14	0.919888	2.873141	chr13	30743467	30743894	LINE|L2|L2c	+	chr13	30735507	30764426	ALOX5AP|ENST00000380490.4	+	30735507,30744059,30752051,30755943,30763943	30735675,30744159,30752122,30756025,30764426	0.714286
SJSA1	chr7	40815628	40815666	40815628	+	RAMPAGE_only	6	6	16	1.051301	2.973557	chr7	40810256	40816712	LINE|L1|L1PA16	-	chr7	40793333	40860763	MSTRG.30417.9	+	40793333,40860315	40793501,40860763	0.937500
SJSA1	chr7	101217578	101217595	101217578	-	High_confidence	8	8	20	1.314126	3.321104	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.950000
SJSA1	chr1	1264869	1264889	1264869	-	RAMPAGE_only	8	9	21	1.379832	2.832561	chr1	1264625	1264892	SINE|Alu|AluSx	+	chr1	1255263	1256335	UBE2J2|ENST00000467339.1	-	1255263,1256044	1255487,1256335	0.809524
SJSA1	chr14	38948205	38948212	38948205	-	High_confidence	8	9	16	1.051301	2.523231	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38838845	38948206	LINC00639|ENST00000557019.5	-	38838845,38941353,38941519,38948177	38839204,38941373,38941695,38948206	0.875000
SJSA1	chrX	44951147	44951148	44951147	+	RAMPAGE_only	19	22	25	1.642657	3.217797	chrX	44950752	44951268	LTR|ERV1|LTR10D	+	chrX	44873551	45111411	KDM6A|ENST00000621147.4	+	44873551,44873923,44961283,44974665,45010960,45020609,45034930,45037654,45053828,45059005,45059246,45061323,45063421,45069578,45076696,45078399,45107456,45110078,45111381	44873712,44873987,44961392,44974715,45011019,45020730,45034985,45037689,45053955,45059104,45059466,45061419,45063817,45070357,45076826,45078493,45107536,45110249,45111411	0.880000
SJSA1	chr1	42959031	42959078	42959077	+	High_confidence	6	6	26	1.708363	2.936043	chr1	42959103	42959181	SINE|MIR|MIR3	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	1.000000
SJSA1	chr14	61595988	61595999	61595993	+	RAMPAGE_only	12	12	34	2.234014	4.051109	chr14	61595934	61596241	SINE|Alu|AluSx1	-	chr14	61570595	61654713	FLJ22447|ENST00000556569.4	+	61570595,61650961,61653622	61570760,61651017,61654713	0.852941
SJSA1	chr7	21618198	21618235	21618200	+	High_confidence	12	16	25	1.642657	2.992289	chr7	21618177	21618299	DNA|hAT-Blackjack|MER81	+	chr7	21618193	21681663	MSTRG.30199.7	+	21618193,21619099,21619955,21635870,21637610,21638938,21658797,21681545	21618473,21619222,21620078,21636095,21637702,21639065,21659031,21681663	0.880000
SJSA1	chr11	65861429	65861430	65861429	+	High_confidence	20	22	22	1.445538	2.776725	chr11	65861460	65861615	SINE|MIR|MIRb	+	chr11	65861398	65863890	MUS81|ENST00000530111.1	+	65861398,65861946,65862210,65862443,65863064,65863409,65863577,65863803	65861435,65862045,65862279,65862529,65863205,65863502,65863657,65863890	1.000000
SJSA1	chr14	68882879	68882912	68882879	-	High_confidence	15	15	28	1.839776	3.297903	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.821429
SJSA1	chr17	82076525	82076526	82076525	-	RAMPAGE_only	63	64	64	4.205202	3.911139	chr17	82076254	82076887	LINE|L1|L1MEc	-	chr17	81511345	81523847	ACTG1|ENST00000575994.5	-	81511345,81511902,81512231,81523641	81511626,81512142,81512360,81523847	0.984375
SJSA1	chr11	123060115	123060251	123060183	-	High_confidence	21	23	303	19.909005	5.333754	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.752475
SJSA1	chr9	39809843	39809859	39809858	-	High_confidence	8	8	19	1.248419	2.663291	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.578947
SJSA1	chr22	39021146	39021170	39021155	+	High_confidence	10	11	30	1.971189	3.789898	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
SJSA1	chr19	13037408	13037410	13037408	+	RAMPAGE_only	7	10	14	0.919888	2.507380	chr19	13037335	13037620	LINE|CR1|L3b	+	chr19	13024938	13094770	NFIX|ENST00000587260.1	+	13024938,13073046,13073421,13073905,13075534,13078612,13081679,13090298,13094634	13025552,13073109,13073496,13074026,13075671,13078735,13081855,13090390,13094770	0.928571
SJSA1	chr13	43053971	43053976	43053971	+	RAMPAGE_only	10	10	18	1.182713	2.858278	chr13	43052716	43054750	LINE|L1|L1PB1	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	1.000000
SJSA1	chr17	41108229	41108283	41108264	+	High_confidence	9	12	48	3.153902	3.832067	chr17	41107954	41108546	LTR|ERV1|MER4-int	+	chr17	41108267	41110274	MSTRG.14965.1	+	41108267,41110003	41108379,41110274	0.541667
SJSA1	chr7	54759973	54759974	54759973	-	High_confidence	14	14	16	1.051301	2.952820	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	1.000000
SJSA1	chr16	87306187	87306227	87306193	-	High_confidence	17	20	51	3.351021	3.870968	chr16	87306116	87306342	LINE|L1|L1MC5	+	chr16	87298885	87306231	MSTRG.13880.3	-	87298885,87302652,87302902,87305718,87306049	87298962,87302769,87303075,87305905,87306231	0.882353
SJSA1	chr19	55280218	55280251	55280218	-	High_confidence	8	10	22	1.445538	2.720129	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
SJSA1	chr12	105255389	105255408	105255407	-	RAMPAGE_only	5	5	11	0.722769	2.913977	chr12	105255202	105255576	LINE|L2|L2b	+	chr12	105173295	105236238	APPL2|ENST00000258530.7	-	105173295,105176034,105176875,105177225,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105235958	105174448,105176082,105177016,105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105236238	1.000000
SJSA1	chr7	107580245	107580267	107580264	+	High_confidence	1183	1212	6202	407.510386	6.427912	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.987423
SJSA1	chr1	41306131	41306133	41306132	-	High_confidence	14	17	22	1.445538	3.646439	chr1	41305850	41306330	LTR|ERVL|LTR33A_	-	chr1	41302809	41306132	MSTRG.958.1	-	41302809,41305841	41303972,41306132	0.909091
SJSA1	chr6	152746512	152746541	152746512	+	RAMPAGE_only	5	5	23	1.511245	2.820899	chr6	152746337	152746578	DNA|TcMar-Tigger|MER44B	-	chr6	152750796	152759765	VIP|NM_003381.3	+	152750796,152752167,152754165,152755268,152756133,152757095,152758909	152750959,152752284,152754288,152755373,152756265,152757184,152759765	0.913043
SJSA1	chr5	142621153	142621229	142621197	-	High_confidence	14	15	58	3.810965	4.289816	chr5	142620934	142621256	LINE|L2|L2c	+	chr5	142592177	142621342	FGF1|ENST00000359370.10	-	142592177,142600701,142613958,142621296	142595484,142600805,142614161,142621342	0.982759
SJSA1	chr2	75239189	75239318	75239193	+	High_confidence	31	37	241	15.835215	5.600933	chr2	75238954	75239942	DNA|TcMar-Tigger|Tigger6a	+	chr2	75239184	75277219	MSTRG.19289.4	+	75239184,75277199	75239696,75277219	0.643154
SJSA1	chr3	46163770	46163780	46163779	+	RAMPAGE_only	14	17	24	1.576951	3.203365	chr3	46161736	46164342	LINE|L1|L1PA12	-	chr3	46189555	46189979	MSTRG.23316.1	+	46189555	46189979	0.666667
SJSA1	chr4	55948010	55948033	55948010	-	RAMPAGE_only	30	51	95	6.242097	4.399112	chr4	55947862	55947994	LTR|ERV1|MER51D	-	chr4	55938775	55940585	MSTRG.25186.1	-	55938775,55940516	55938955,55940585	0.631579
SJSA1	chr21	44962745	44962757	44962745	+	RAMPAGE_only	6	7	18	1.182713	2.748940	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44958245	44976973	FAM207A|ENST00000479127.5	+	44958245,44960099,44967033,44973196,44976679	44958424,44960168,44967181,44973265,44976973	0.944444
SJSA1	chr11	64226142	64226186	64226158	-	High_confidence	68	74	411	27.005284	6.616137	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.980535
SJSA1	chr10	6779602	6779656	6779602	+	High_confidence	5	6	35	2.299720	4.300554	chr10	6779419	6779969	LTR|ERVL|MLT2A2	+	chr10	6779597	6842906	LINC00707|NR_038291.1	+	6779597,6781303,6833642,6837973,6840390	6779887,6781486,6833688,6838008,6842906	0.685714
SJSA1	chr12	113948854	113948917	113948854	-	RAMPAGE_only	7	7	26	1.708363	3.653661	chr12	113948646	113948806	SINE|MIR|MIRb	-	chr12	113816741	113966306	RBM19|ENST00000545145.6	-	113816741,113823208,113844667,113858790,113914968,113918391,113920610,113924696,113927053,113937006,113939959,113942323,113945827,113946353,113947333,113948832,113950082,113952511,113955130,113957781,113959211,113959864,113960058,113962231,113966191	113818186,113823321,113844788,113858896,113915085,113918447,113920690,113924757,113927229,113937136,113940160,113942434,113945924,113946475,113947464,113949036,113950154,113952590,113955211,113958050,113959404,113959903,113960178,113962414,113966306	0.961538
SJSA1	chr17	35432475	35432513	35432499	-	High_confidence	5	5	23	1.511245	3.344457	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	1.000000
SJSA1	chr16	4015655	4015673	4015668	-	High_confidence	3	3	9	0.591357	2.725481	chr16	4015652	4015685	SINE|MIR|MIR	+	chr16	3983391	4015682	ADCY9|ENST00000575550.5	-	3983391,3988993,3993405,4007367,4015561	3983440,3989096,3993510,4007558,4015682	0.888889
SJSA1	chr12	10363964	10363975	10363964	+	High_confidence	8	9	22	1.445538	3.200910	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.590909
SJSA1	chr11	66192335	66192341	66192340	+	RAMPAGE_only	4	7	12	0.788475	2.663533	chr11	66192188	66192558	LINE|L2|L2b	-	chr11	66100762	66216250	PACS1|ENST00000527380.1	+	66100762,66193485,66210361,66211133,66216118	66100874,66193573,66210451,66211259,66216250	0.500000
SJSA1	chr19	13853537	13853538	13853537	+	RAMPAGE_only	17	18	18	1.182713	2.933955	chr19	13853485	13853656	DNA|TcMar-Tigger|Tigger7	-	chr19	13862062	13880755	NANOS3|ENST00000591727.1	+	13862062,13880441	13862194,13880755	0.888889
SJSA1	chr12	68840943	68841194	68840943	+	RAMPAGE_only	57	60	792	52.039379	5.689919	chr12	68840835	68841135	SINE|Alu|AluSz	-	chr12	68809016	68845544	MDM2|NM_001278462.1	+	68809016,68809207,68813553,68835828,68836671,68839273	68809086,68809292,68813628,68835984,68836749,68845544	0.996212
SJSA1	chr12	109478055	109478087	109478072	+	High_confidence	3	3	12	0.788475	2.918296	chr12	109478029	109478228	SINE|MIR|MIRb	+	chr12	109477654	109492737	UBE3B|ENST00000537063.1	+	109477654,109481636,109483530,109483860,109486011,109486470,109488571,109489918	109477764,109481742,109483712,109483981,109486071,109486575,109488668,109492737	0.833333
SJSA1	chr7	134432378	134432451	134432435	-	High_confidence	32	42	265	17.412166	4.919534	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.996226
SJSA1	chr8	461441	461499	461441	-	RAMPAGE_only	15	21	47	3.088195	3.961077	chr8	461265	461621	LTR|ERVL-MaLR|THE1B	-	chr8	450713	462712	MSTRG.31732.2	-	450713,461349	457100,462712	0.787234
SJSA1	chr1	153549133	153549134	153549133	-	High_confidence	11	13	17	1.117007	2.780639	chr1	153549066	153549188	SINE|MIR|MIRb	+	chr1	153547512	153549126	S100A3|ENST00000368712.1	-	153547512,153548344,153549027	153547846,153548490,153549126	0.941176
SJSA1	chr1	89272764	89272784	89272764	-	High_confidence	5	5	21	1.379832	2.874493	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89262697	89272804	GBP5|ENST00000443807.1	-	89262697,89263735,89264685,89266345,89266956,89267416,89268728,89269365	89262785,89263948,89264966,89266588,89267153,89267526,89268856,89272804	1.000000
SJSA1	chr11	7906253	7906254	7906253	-	High_confidence	16	18	20	1.314126	2.903702	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.550000
SJSA1	chr1	157274870	157274893	157274892	+	RAMPAGE_only	63	70	127	8.344698	5.832244	chr1	157274375	157275504	LTR|ERV1|HERVFH21-int	-	chr1	157276043	157285131	MSTRG.2490.1	+	157276043,157280718,157282577	157276561,157280853,157285131	0.937008
SJSA1	chr7	112995629	112995662	112995659	-	High_confidence	12	22	58	3.810965	4.450244	chr7	112995411	112995725	LINE|L2|L2	+	chr7	112954634	112995643	HRAT17|NR_110162.1	-	112954634,112956521,112973604,112980045,112986535,112995567	112954768,112956702,112973672,112980164,112986664,112995643	0.879310
SJSA1	chr3	29280850	29280882	29280850	-	High_confidence	2	3	18	1.182713	3.239098	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.722222
SJSA1	chr4	44016697	44016727	44016697	+	High_confidence	10	10	36	2.365426	3.985781	chr4	44016424	44016724	LTR|ERV1|MER51A	-	chr4	44016860	44020256	LINC02475|ENST00000507639.1	+	44016860,44019750	44017062,44020256	1.000000
SJSA1	chr1	1655369	1655449	1655448	-	RAMPAGE_only	6	6	28	1.839776	3.270942	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	1.000000
SJSA1	chr6	26474345	26474348	26474345	+	RAMPAGE_only	14	15	36	2.365426	3.615725	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.611111
SJSA1	chr1	85521738	85521740	85521739	-	RAMPAGE_only	10	14	16	1.051301	2.577820	chr1	85521595	85521965	LINE|L2|L2c	+	chr1	85318484	85578150	MSTRG.1514.2	-	85318484,85324739,85350414,85351505,85358747,85464742,85496165,85577983	85321568,85324883,85350534,85351579,85358847,85474618,85496281,85578150	0.875000
SJSA1	chr6	5498473	5498510	5498487	+	High_confidence	91	93	283	18.594879	4.962361	chr6	5498468	5498580	LINE|L2|L2b	+	chr6	5498534	5771580	MSTRG.28060.7	+	5498534,5545179,5613168,5771290	5498556,5545340,5613320,5771580	0.985866
SJSA1	chr12	27716415	27716444	27716443	+	RAMPAGE_only	3	4	12	0.788475	2.584963	chr12	27716483	27716564	LINE|L2|L2	+	chr12	27710846	27755537	MRPS35|ENST00000542791.1	+	27710846,27755180	27710955,27755537	0.750000
SJSA1	chr2	3536476	3536516	3536515	-	High_confidence	10	12	47	3.088195	4.088431	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531989	3536481	MSTRG.18459.5	-	3531989,3533107,3534112,3536447	3532310,3533190,3534255,3536481	0.659574
SJSA1	chr14	58078235	58078242	58078235	-	RAMPAGE_only	5	6	18	1.182713	3.725481	chr14	58077819	58078371	LINE|CR1|L3	-	chr14	58000760	58152213	ARMH4|ENST00000267485.7	-	58000760,58005047,58012118,58096723,58131511,58133089,58137989,58152074	58004804,58005182,58012150,58096981,58131721,58133341,58139414,58152213	0.500000
SJSA1	chr6	114000183	114000213	114000212	-	RAMPAGE_only	3	5	9	0.591357	2.503258	chr6	114000001	114000273	LTR|ERVL-MaLR|THE1B	-	chr6	113933027	113971285	HDAC2|ENST00000519065.5	-	113933027,113941707,113943350,113944279,113945361,113946007,113948978,113949167,113953276,113956012,113956618,113958648,113959905,113970856	113941088,113941765,113943506,113944410,113945470,113946148,113949087,113949260,113953418,113956151,113956693,113958766,113960018,113971285	1.000000
SJSA1	chr2	227534913	227534951	227534916	+	RAMPAGE_only	4	5	16	1.051301	3.006239	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.875000
SJSA1	chr14	65336367	65336373	65336367	+	RAMPAGE_only	4	4	10	0.657063	2.503258	chr14	65336103	65336855	LINE|L2|L2a	-	chr14	65410591	65744121	FUT8|NM_178156.2	+	65410591,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65411993,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65744121	0.600000
SJSA1	chr12	10170534	10170566	10170534	+	High_confidence	2	2	8	0.525650	2.521641	chr12	10170491	10170780	SINE|Alu|AluSg	-	chr12	10170728	10175522	TMEM52B|ENST00000545924.1	+	10170728,10175281	10170851,10175522	0.750000
SJSA1	chr15	82093996	82094082	82094031	+	RAMPAGE_only	60	62	463	30.422010	5.372298	chr15	82093781	82094459	DNA|TcMar-Tigger|Tigger7	+	chr15	82088632	82095707	LINC01583|ENST00000559788.1	+	82088632,82091726,82095481	82088728,82091935,82095707	0.822894
SJSA1	chr12	54187904	54187905	54187904	-	High_confidence	6	6	8	0.525650	2.500000	chr12	54187852	54187993	LINE|L2|L2c	-	chr12	54181452	54188607	SMUG1|ENST00000506595.5	-	54181452,54182503,54183655,54188514	54181647,54182623,54183959,54188607	0.875000
SJSA1	chr12	105228043	105228044	105228043	-	RAMPAGE_only	12	12	17	1.117007	3.028639	chr12	105227914	105228076	LINE|L2|L2c	+	chr12	105177109	105233154	APPL2|ENST00000547809.5	-	105177109,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105233090	105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105233154	1.000000
SJSA1	chr8	141679632	141679652	141679651	+	High_confidence	6	6	18	1.182713	2.771902	chr8	141679545	141679780	SINE|MIR|MIRb	-	chr8	141679614	141686917	MSTRG.33009.1	+	141679614,141683657	141679859,141686917	0.888889
SJSA1	chr12	122064322	122064333	122064332	+	RAMPAGE_only	10	10	21	1.379832	3.064970	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.571429
SJSA1	chr9	136572104	136572168	136572148	-	High_confidence	74	80	339	22.274431	5.996397	chr9	136572050	136572111	DNA|hAT-Tip100|MER91C	-	chr9	136554928	136572172	MSTRG.34440.1	-	136554928,136571956	136565425,136572172	0.805310
SJSA1	chr6	43025291	43025322	43025321	+	High_confidence	6	6	24	1.576951	3.174886	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.833333
SJSA1	chr7	123211354	123211375	123211355	+	RAMPAGE_only	1209	1854	2785	182.992007	6.227995	chr7	123211158	123211525	LTR|ERVL-MaLR|THE1D	+	chr7	123456628	123474426	MSTRG.31308.1	+	123456628,123457398,123459692,123467160	123456765,123457548,123467067,123474426	0.884381
SJSA1	chr16	2205756	2205846	2205845	+	High_confidence	6	6	53	3.482433	3.675085	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.924528
SJSA1	chr12	65734838	65734879	65734878	+	RAMPAGE_only	9	11	42	2.759664	3.461769	chr12	65734807	65735070	LTR|ERVL-MaLR|MLT1J	+	chr12	65709298	65748492	MSTRG.8027.2	+	65709298,65734837,65735688,65745399	65718319,65734927,65735829,65748492	0.952381
SJSA1	chr6	13794241	13794290	13794241	-	RAMPAGE_only	39	40	118	7.753342	4.288584	chr6	13794117	13794268	SINE|Alu|FLAM_C	-	chr6	13787133	13801345	MCUR1|ENST00000607303.1	-	13787133,13788645,13791877,13793893,13798832,13800340,13801287	13787355,13788704,13791992,13793947,13798904,13800382,13801345	0.957627
SJSA1	chr17	9512803	9512804	9512803	-	RAMPAGE_only	9	10	13	0.854182	2.623517	chr17	9512729	9513183	LINE|L1|L1MA5A	+	chr17	9250506	9575811	STX8|ENST00000575294.6	-	9250506,9378551,9491828,9568370,9575791	9250645,9378653,9491921,9568470,9575811	0.846154
SJSA1	chr6	10481968	10481969	10481968	-	RAMPAGE_only	29	30	39	2.562545	4.231370	chr6	10481698	10483280	LTR|ERV1|LTR12C	-	chr6	10474499	10478502	LINC02522|ENST00000431401.1	-	10474499,10478340	10474593,10478502	0.666667
SJSA1	chr7	48000370	48000397	48000396	-	High_confidence	3	4	11	0.722769	2.921928	chr7	48000133	48000438	SINE|Alu|AluSx	-	chr7	47987147	48000231	MSTRG.30503.1	-	47987147,47988787,47991009,47993051,47994314,47996030,48000127	47987449,47988880,47991045,47993076,47994482,47996146,48000231	0.909091
SJSA1	chr12	89449218	89449224	89449223	-	High_confidence	14	20	38	2.496839	4.384795	chr12	89449194	89449260	SINE|MIR|MIRc	+	chr12	89419717	89449218	MSTRG.8211.1	-	89419717,89425160,89449071	89421257,89425379,89449218	0.815789
SJSA1	chr12	113962569	113962581	113962580	-	RAMPAGE_only	5	5	11	0.722769	2.732159	chr12	113962560	113962750	SINE|MIR|MIR	+	chr12	113957862	113966209	RBM19|ENST00000546876.1	-	113957862,113959864,113960058,113962231,113966135	113958050,113959903,113960178,113962414,113966209	1.000000
SJSA1	chr10	3435704	3435745	3435704	-	High_confidence	22	22	89	5.847859	4.196625	chr10	3435309	3436154	LINE|L1|L1MB8	+	chr10	3432542	3435742	MSTRG.3528.1	-	3432542,3434806,3435673	3434362,3434978,3435742	1.000000
SJSA1	chr2	1792564	1792635	1792604	-	High_confidence	6	7	51	3.351021	4.159080	chr2	1792587	1792899	SINE|Alu|AluSz	+	chr2	1789116	1792901	MYT1L|ENST00000648814.1	-	1789116,1792320	1792007,1792901	0.901961
SJSA1	chr3	64462331	64462375	64462371	-	High_confidence	63	66	175	11.498600	5.570259	chr3	64462250	64462410	LINE|CR1|L3	-	chr3	64453110	64462719	MSTRG.23626.1	-	64453110,64456874,64459289,64462267	64454765,64456993,64459404,64462719	0.982857
SJSA1	chrX	20026407	20026420	20026419	-	High_confidence	5	7	13	0.854182	2.623517	chrX	20026328	20026400	LINE|L1|L1MB3	-	chrX	20021347	20025943	MAP7D2|ENST00000466145.1	-	20021347,20024950,20025680	20021549,20025083,20025943	1.000000
SJSA1	chr3	110969835	110969836	110969835	-	High_confidence	9	10	13	0.854182	2.918296	chr3	110969731	110970304	LTR|ERV1|LTR10C	-	chr3	110890142	110969874	MSTRG.23849.2	-	110890142,110893137,110969501	110892603,110893830,110969874	0.769231
SJSA1	chr1	41305888	41305943	41305942	-	High_confidence	11	13	82	5.387915	5.166714	chr1	41305850	41306330	LTR|ERVL|LTR33A_	-	chr1	41303103	41305959	MSTRG.958.3	-	41303103,41305841	41303908,41305959	0.975610
SJSA1	chr5	109383497	109383500	109383499	-	High_confidence	11	14	21	1.379832	2.941446	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.952381
SJSA1	chr17	59892716	59892741	59892716	-	High_confidence	14	15	43	2.825370	3.914783	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.860465
SJSA1	chr2	174118081	174118145	174118117	-	High_confidence	18	20	118	7.753342	5.272153	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075189	174118296	MSTRG.20099.4	-	174075189,174078967,174081151,174081923,174117982	174075527,174079090,174081248,174082064,174118296	0.991525
SJSA1	chr5	149509885	149509942	149509885	-	RAMPAGE_only	5	6	37	2.431133	3.658532	chr5	149509722	149509839	SINE|Alu|AluJb	-	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.972973
SJSA1	chr12	57481810	57481857	57481856	-	High_confidence	9	9	28	1.839776	4.208966	chr12	57481550	57482119	LINE|L2|L2b	+	chr12	57476870	57481803	MSTRG.7925.22	-	57476870,57477155,57477458,57478539,57479090,57480777,57481785	57476963,57477269,57477680,57478757,57479424,57480834,57481803	0.642857
SJSA1	chr2	241235121	241235139	241235121	-	RAMPAGE_only	3	3	14	0.919888	2.623517	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241229438	241230848	HDLBP|ENST00000484412.1	-	241229438,241229832,241230068,241230758	241229687,241229961,241230269,241230848	0.571429
SJSA1	chr21	46348652	46348659	46348652	+	High_confidence	3	3	11	0.722769	2.646439	chr21	46348617	46348925	SINE|Alu|AluJo	-	chr21	46348238	46353326	PCNT|ENST00000483844.1	+	46348238,46349011,46349683,46351428,46353103	46348325,46349186,46349820,46351540,46353326	0.727273
SJSA1	chr13	109272199	109272203	109272202	+	High_confidence	1630	1794	2510	164.922778	7.300221	chr13	109271794	109272374	LTR|ERV1|LTR9	+	chr13	109272204	109309184	MSTRG.9616.6	+	109272204,109274192,109287340,109287702,109297177,109300737	109273268,109286417,109287515,109287798,109300695,109309184	0.975299
SJSA1	chr3	139344535	139344548	139344547	+	High_confidence	163	166	432	28.385116	5.269809	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.988426
SJSA1	chr6	52955040	52955041	52955040	+	RAMPAGE_only	28	28	28	1.839776	2.927741	chr6	52955078	52955376	SINE|Alu|AluSz6	+	chr6	52995619	52995950	RF00100|ENST00000365328.1	+	52995619	52995950	1.000000
SJSA1	chr19	5680234	5680249	5680234	-	High_confidence	10	12	37	2.431133	3.780591	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.972973
SJSA1	chr8	18063215	18063216	18063215	-	High_confidence	7	8	10	0.657063	2.521928	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
SJSA1	chrY	2841013	2841035	2841013	+	High_confidence	11	13	30	1.971189	3.577747	chrY	2840977	2841073	LINE|L1|L1MB7	-	chrY	2841485	2867268	RPS4Y1|ENST00000250784.12	+	2841485,2842164,2844076,2845645,2854599,2865087,2866792	2841627,2842242,2844257,2845743,2854771,2865245,2867268	0.600000
SJSA1	chr15	80059918	80059933	80059918	+	High_confidence	101	136	382	25.099801	5.078359	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.986911
SJSA1	chrX	120143500	120143501	120143500	+	RAMPAGE_only	66	68	70	4.599440	4.518976	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120120551	120146855	MSTRG.35376.3	+	120120551,120120851,120138997,120143722,120145637	120120680,120121139,120139119,120143900,120146855	0.971429
SJSA1	chr1	22040775	22040776	22040775	+	RAMPAGE_only	6	6	6	0.394238	2.584963	chr1	22040725	22041069	SINE|Alu|AluSx	+	chr1	22052626	22092923	CDC42|ENST00000400259.5	+	22052626,22078428,22081721,22086438,22086668,22091427	22052868,22078583,22081794,22086548,22086866,22092923	1.000000
SJSA1	chr17	49646462	49646475	49646471	-	High_confidence	4	5	15	0.985594	2.502736	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49607249	49646622	MSTRG.15327.10	-	49607249,49607873,49611279,49612778,49618503,49618980,49619233,49621945,49622732,49646115	49607372,49607929,49611457,49612941,49618563,49619108,49619385,49622067,49622876,49646622	0.933333
SJSA1	chr20	18794049	18794078	18794077	+	High_confidence	4	5	8	0.525650	2.521641	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.875000
SJSA1	chr4	102431179	102431248	102431237	-	High_confidence	24	27	157	10.315887	4.895877	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.929936
SJSA1	chrX	70613339	70613429	70613380	-	High_confidence	89	96	545	35.809926	6.056693	chrX	70613122	70616531	LINE|L1|L1M1	+	chrX	70524957	70613488	MSTRG.35041.1	-	70524957,70528120,70529834,70552125,70553305,70554650,70591750,70605400,70606958,70609090,70610502,70613252	70526110,70528192,70529999,70552246,70553414,70554800,70591823,70605517,70607029,70609177,70610543,70613488	0.985321
SJSA1	chr12	45973705	45973706	45973705	-	RAMPAGE_only	6	6	9	0.591357	2.947703	chr12	45973038	45974003	LINE|L1|L1MD2	+	chr12	45919130	45990565	SCAF11|ENST00000369367.7	-	45919130,45922462,45922935,45924727,45926141,45931505,45933130,45934175,45934446,45945248,45948436,45951649,45961699,45964106,45990352	45922194,45922582,45923154,45925074,45928859,45931612,45933232,45934285,45934505,45945313,45948537,45951727,45961857,45964188,45990565	0.666667
SJSA1	chr5	71586744	71586756	71586744	+	High_confidence	24	24	44	2.891077	3.306607	chr5	71586450	71587046	LTR|ERV1|MER51A	-	chr5	71587287	71658704	MCCC2|NM_022132.4	+	71587287,71592925,71596279,71599658,71602505,71604355,71626639,71632120,71634942,71635150,71641002,71643818,71646210,71649096,71650068,71652668,71656742	71587554,71592992,71596364,71599760,71602633,71604468,71626753,71632185,71635042,71635246,71641075,71643895,71646277,71649253,71650183,71652754,71658704	0.954545
SJSA1	chr11	123559334	123559381	123559380	+	High_confidence	8	13	42	2.759664	2.532374	chr11	123559340	123559537	SINE|MIR|MIRb	+	chr11	123560261	123626401	GRAMD1B|ENST00000529432.5	+	123560261,123577366,123584311,123594081,123594734,123595941,123600467,123603425,123605321,123606608,123608658,123609794,123610195,123612760,123613454,123614744,123618344,123618692,123619106,123622505	123560527,123577577,123584332,123594166,123594838,123596037,123600548,123603541,123605478,123606798,123608802,123609913,123610338,123612864,123613658,123614835,123618356,123618800,123619224,123626401	0.976190
SJSA1	chr10	65570519	65570540	65570521	+	High_confidence	10	17	30	1.971189	3.745406	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.666667
SJSA1	chr11	14337080	14337105	14337080	-	High_confidence	5	5	17	1.117007	3.146286	chr11	14335603	14337092	LINE|L1|L1MDa	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.529412
SJSA1	chr10	92483699	92483705	92483704	-	RAMPAGE_only	16	17	30	1.971189	3.360012	chr10	92483683	92484129	LTR|ERVL-MaLR|MLT1F	+	chr10	92475944	92479587	IDE|ENST00000463640.1	-	92475944,92478644,92479276	92475994,92478789,92479587	0.500000
SJSA1	chr3	8942251	8942252	8942251	-	RAMPAGE_only	76	82	88	5.782153	4.632267	chr3	8942099	8942501	LTR|ERVL-MaLR|MSTA	+	chr3	8881263	8963431	RAD18|ENST00000415439.5	-	8881263,8890388,8898893,8902379,8912311,8935870,8939553,8941466,8947219,8948508,8958919,8963334	8881459,8890451,8899047,8902520,8912372,8936055,8939653,8941804,8947290,8948570,8959001,8963431	0.931818
SJSA1	chr22	18149863	18149869	18149868	+	High_confidence	18	18	41	2.693958	3.586108	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
SJSA1	chr1	230856006	230856049	230856006	-	High_confidence	11	17	61	4.008083	4.402480	chr1	230855985	230856233	SINE|MIR|MIRb	+	chr1	230837118	230856036	C1orf198|NM_001136495.1	-	230837118,230843353,230855667,230855877	230839908,230843896,230855718,230856036	0.983607
SJSA1	chr15	52100517	52100539	52100527	-	High_confidence	4	6	17	1.117007	2.548795	chr15	52100279	52100861	LTR|ERVL|MER73	-	chr15	52056674	52100523	AC023906.5|ENST00000558607.1	-	52056674,52100469	52057255,52100523	0.882353
SJSA1	chr2	87469947	87469950	87469947	+	RAMPAGE_only	33	35	94	6.176391	4.720078	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87455844	87521504	CYTOR|ENST00000645138.1	+	87455844,87480222,87521206	87455973,87480423,87521504	0.542553
SJSA1	chr9	39810009	39810034	39810033	-	High_confidence	15	15	27	1.774070	2.993411	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.925926
SJSA1	chr16	30354709	30354710	30354709	-	High_confidence	9	9	9	0.591357	3.169925	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	1.000000
SJSA1	chr3	131109410	131109428	131109427	+	High_confidence	11	11	26	1.708363	2.873270	chr3	131109170	131109680	LTR|ERV1|MER67A	-	chr3	131109399	131350491	MSTRG.24143.15	+	131109399,131109802,131132744,131133829,131152387,131152630,131155035,131162407,131165425,131168829,131170772,131228527,131243435,131273477,131349556	131109503,131109921,131132809,131133956,131152537,131152709,131155121,131162527,131165519,131168937,131170887,131228688,131243496,131273574,131350491	0.923077
SJSA1	chr2	85377097	85377107	85377097	+	High_confidence	5	5	16	1.051301	2.780639	chr2	85377052	85377138	LINE|L2|L2	-	chr2	85376881	85390995	ELMOD3|ENST00000496957.1	+	85376881,85377343,85389750,85390137,85390759	85376916,85377474,85389827,85390265,85390995	0.812500
SJSA1	chr2	171231287	171231296	171231295	-	High_confidence	119	120	212	13.929733	5.624646	chr2	171231092	171231479	LTR|ERVL-MaLR|MLT1C	-	chr2	170990822	171231314	TLK1|NM_001136554.1	-	170990822,170996652,170997711,171006146,171006473,171006799,171006971,171011372,171014850,171028338,171046173,171049813,171050063,171053760,171055082,171056470,171058150,171061080,171082780,171117738,171231144	170993956,170996760,170997823,171006282,171006643,171006889,171007063,171011454,171014948,171028405,171046362,171049950,171050174,171053853,171055172,171056566,171058197,171061156,171082852,171117857,171231314	0.929245
SJSA1	chr6	28354137	28354206	28354205	-	High_confidence	20	25	104	6.833454	5.091810	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.740385
SJSA1	chr11	123061296	123061328	123061296	-	High_confidence	7	7	34	2.234014	3.403819	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.882353
SJSA1	chr3	11225885	11225939	11225885	-	High_confidence	9	9	62	4.073790	4.826517	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.532258
SJSA1	chr11	126648114	126648124	126648122	+	High_confidence	4	10	17	1.117007	3.101881	chr11	126647942	126648306	LTR|ERVL-MaLR|MSTA	+	chr11	126648129	126682103	MSTRG.6768.1	+	126648129,126652780,126681782	126648229,126652929,126682103	0.705882
SJSA1	chr12	104280730	104280785	104280753	-	High_confidence	15	21	78	5.125090	4.832811	chr12	104280524	104280952	LTR|ERVL|MLT2D	+	chr12	104262313	104280722	AC089983.1|ENST00000549807.1	-	104262313,104280283	104262575,104280722	0.897436
SJSA1	chr7	155666144	155666213	155666212	+	RAMPAGE_only	5	5	21	1.379832	2.860964	chr7	155666073	155666515	LTR|ERVL|MLT2B1	-	chr7	155672879	155745720	RBM33|ENST00000307403.6	+	155672879,155678607,155680589,155700772,155706859,155707293,155711202,155718384,155737529,155738059,155741818,155744960	155672915,155678684,155680908,155700944,155707068,155707380,155711455,155718443,155737662,155740026,155742106,155745720	0.857143
SJSA1	chr4	84870536	84870538	84870537	-	RAMPAGE_only	5	9	12	0.788475	2.663533	chr4	84870233	84870887	LINE|L1|L1MCa	+	chr4	84841191	84850015	WDFY3|ENST00000514071.1	-	84841191,84844455,84849901	84841263,84844509,84850015	0.666667
SJSA1	chrX	115647934	115647973	115647972	+	RAMPAGE_only	7	8	22	1.445538	2.828781	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	1.000000
SJSA1	chr1	67792105	67792142	67792105	-	High_confidence	9	9	29	1.905482	3.726474	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701465	67791787	MSTRG.1388.2	-	67701465,67707593,67777457,67791642	67705576,67707712,67777507,67791787	0.724138
SJSA1	chr22	42721249	42721282	42721281	-	High_confidence	5	5	18	1.182713	3.016876	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.888889
SJSA1	chr9	129488730	129488857	129488856	+	High_confidence	73	77	360	23.654263	4.955831	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.988889
SJSA1	chr1	166850103	166850125	166850112	+	RAMPAGE_only	3	3	10	0.657063	2.503258	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.900000
SJSA1	chr16	11587468	11587475	11587468	-	High_confidence	16	17	37	2.431133	3.237491	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.972973
SJSA1	chr12	6493546	6493572	6493553	-	High_confidence	4	4	13	0.854182	3.085055	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	1.000000
SJSA1	chr6	43013392	43013393	43013392	-	High_confidence	83	83	85	5.585034	5.447404	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.976471
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	67791731	67791754	67791731	-	RAMPAGE_only	4	4	12	0.558038	3.251629	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701465	67833467	GNG12|ENST00000370982.3	-	67701465,67707593,67777457,67833343	67705576,67707712,67777507,67833467	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	87811331	87811332	87811331	-	RAMPAGE_only	8	8	8	0.372025	2.750000	chr8	87811198	87811495	SINE|Alu|AluSz	-	chr8	87540834	87755695	AF121898.1|ENST00000440763.6	-	87540834,87636600,87751206,87755651	87542489,87636650,87751317,87755695	0.625000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	53523890	53523891	53523890	-	High_confidence	5	5	8	0.372025	2.500000	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	111097319	111097352	111097319	-	High_confidence	7	8	32	1.488101	4.215061	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.906250
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	67387537	67387538	67387537	-	RAMPAGE_only	5	5	8	0.372025	2.521641	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	65912517	67665685	CTNNA3|NM_001127384.2	-	65912517,65966611,65988691,66069307,66103156,66280469,66379151,66520616,66621691,66766263,66775443,67180316,67219606,67521841,67539502,67606856,67647414,67665540	65920617,65966746,65988797,66069489,66103249,66280621,66379352,66520773,66621784,66766416,66775524,67180520,67219870,67521961,67539669,67607049,67647518,67665685	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	193656716	193656757	193656716	+	RAMPAGE_only	55	55	88	4.092277	5.640938	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193648765	193659514	OPA1|ENST00000482865.1	+	193648765,193654861,193657079,193658886,193659481	193648871,193655027,193657232,193658995,193659514	0.602273
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	96934326	96934366	96934365	+	RAMPAGE_only	5	5	16	0.744050	3.189898	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.875000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	100908117	100908118	100908117	+	RAMPAGE_only	6	6	9	0.418528	2.947703	chr14	100908125	100908312	SINE|MIR|MIR	+	chr14	100907042	100927413	MSTRG.8024.70	+	100907042,100916678	100916658,100927413	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	29530607	29530651	29530607	-	RAMPAGE_only	2	2	10	0.465032	2.921928	chr10	29530411	29530568	SINE|Alu|FLAM_C	-	chr10	29457347	29634972	SVIL|NM_021738.2	-	29457347,29458433,29462276,29463491,29465594,29467741,29470275,29471137,29473837,29480536,29481583,29484655,29486084,29486409,29487162,29488600,29490846,29493213,29494913,29495091,29499115,29512734,29522409,29523450,29524471,29526960,29529704,29530606,29531253,29532001,29532528,29535988,29550596,29554782,29555050,29563200,29569254,29634419	29458333,29458589,29462401,29463635,29465750,29467875,29470483,29471243,29473989,29480813,29481728,29484831,29486230,29486557,29487299,29488756,29491019,29493391,29495000,29495181,29499263,29512861,29522635,29524027,29524715,29527056,29529844,29530668,29531288,29532172,29533458,29536069,29551263,29554934,29555108,29563292,29569312,29634972	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	69494990	69495008	69495007	+	High_confidence	7	8	14	0.651044	3.521641	chr10	69494989	69495143	SINE|MIR|MIR3	+	chr10	69494970	69507077	TSPAN15|ENST00000486093.5	+	69494970,69495593,69498279,69504437,69506123,69506828	69495036,69495689,69498396,69504485,69506240,69507077	0.571429
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	92536651	92536704	92536674	-	High_confidence	7	7	26	1.209082	4.238901	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.923077
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	96618304	96618335	96618331	-	High_confidence	8	8	23	1.069572	4.023137	chr9	96618328	96618382	SINE|MIR|MIRc	-	chr9	96534140	96618606	CDC14B|ENST00000415608.1	-	96534140,96534454,96539077,96541825,96551795,96562692,96564776,96565392,96618494	96534157,96534542,96539140,96541892,96551872,96562785,96564852,96565483,96618606	0.608696
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	84632138	84632147	84632146	+	RAMPAGE_only	3	3	10	0.465032	2.947703	chr8	84631952	84632326	LTR|ERVL-MaLR|MLT1A0	+	chr8	84705926	84921844	RALYL|NM_001287244.1	+	84705926,84774578,84804769,84849979,84862295,84873283,84887603,84920893	84706060,84774654,84804802,84850027,84862453,84873397,84887776,84921844	0.800000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	130497162	130497233	130497232	+	High_confidence	6	6	36	1.674113	4.479143	chr7	130497281	130497565	SINE|Alu|AluSx	+	chr7	130497676	130498801	MEST|ENST00000475188.1	+	130497676,130498138,130498418	130498013,130498275,130498801	0.583333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	85330237	85330290	85330237	-	RAMPAGE_only	13	14	42	1.953132	4.695157	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	79481730	79481756	79481730	-	RAMPAGE_only	3	3	11	0.511535	3.459432	chr5	79481262	79481938	LINE|L1|L1MEc	+	chr5	79375929	79512794	HOMER1|ENST00000282260.10	-	79375929,79396822,79397526,79450989,79456861,79512769	79376197,79396903,79397637,79451121,79457018,79512794	0.636364
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	169182832	169182839	169182832	-	High_confidence	5	5	9	0.418528	2.947703	chr6	169182607	169182961	LTR|ERVL-MaLR|THE1A	-	chr6	169175303	169182740	LINC02544|ENST00000564830.2	-	169175303,169179275,169182683	169175671,169179394,169182740	0.888889
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	27229197	27229224	27229197	-	RAMPAGE_only	8	10	28	1.302088	3.717850	chr16	27229101	27229466	LINE|L2|L2b	+	chr16	27225024	27268741	NSMCE1|ENST00000565070.5	-	27225024,27225725,27233000,27234187,27235177,27257434,27268705	27225236,27226836,27233147,27234265,27235299,27257581,27268741	0.857143
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	200889279	200889318	200889293	-	High_confidence	59	59	183	8.510077	6.106056	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.606557
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	107266356	107266357	107266356	+	RAMPAGE_only	20	21	21	0.976566	3.884184	chr4	107265946	107266484	LTR|ERVL|MLT2F	+	chr4	107258699	107301870	AC104663.1|ENST00000508555.1	+	107258699,107301488	107258874,107301870	0.761905
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	53523963	53523968	53523963	-	High_confidence	5	5	19	0.883560	3.221097	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.947368
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	65570509	65570536	65570521	+	High_confidence	16	24	69	3.208717	5.071372	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.608696
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	172453101	172453123	172453114	+	High_confidence	11	11	38	1.767120	4.491220	chr1	172453135	172453205	LINE|RTE-BovB|MamRTE1	+	chr1	172452892	172468829	C1orf105|NM_001300760.1	+	172452892,172456414,172462177,172465298,172468448	172453189,172456489,172462245,172465363,172468829	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	27558503	27558504	27558503	-	RAMPAGE_only	5	5	8	0.372025	2.500000	chr1	27558497	27558557	SINE|MIR|MIR3	+	chr1	27534272	27603479	AHDC1|ENST00000644989.1	-	27534272,27547260,27552891,27553073,27558705,27603396	27534916,27552189,27552929,27553304,27558883,27603479	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	110182540	110182577	110182560	-	RAMPAGE_only	4	4	11	0.511535	3.459432	chr2	110180528	110183130	LINE|L1|L1PA10	+	chr2	110123707	110204972	NPHP1|ENST00000355301.8	-	110123707,110125636,110129185,110131678,110143541,110144492,110146752,110147915,110150181,110160126,110161602,110163047,110164687,110165051,110168451,110169805,110201420,110204899	110124063,110125681,110129259,110131791,110143641,110144569,110146835,110148026,110150256,110160255,110161697,110163132,110164730,110165155,110168553,110169998,110201494,110204972	0.545455
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	143193390	143193433	143193432	+	RAMPAGE_only	25	29	95	4.417799	5.869547	chr2	143192526	143193504	DNA|DNA|MER130	+	chr2	143129329	143768352	ARHGAP15|NM_018460.3	+	143129329,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.715789
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	21	21	21	0.976566	2.606138	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	100922469	100922552	100922469	+	RAMPAGE_only	6	6	24	1.116076	4.022055	chr14	100921326	100923195	LINE|L1|L1PB1	-	chr14	100907042	100927413	MSTRG.8024.70	+	100907042,100916678	100916658,100927413	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chrX	73837421	73837462	73837439	-	RAMPAGE_only	4	4	21	0.976566	3.366091	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.761905
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	47780100	47780108	47780107	+	High_confidence	172	263	358	16.648128	5.673897	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.927374
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	37020017	37020018	37020017	-	RAMPAGE_only	4	4	7	0.325522	2.521641	chr2	37019897	37020204	SINE|Alu|AluSz	-	chr2	37008167	37013995	HEATR5B|ENST00000471051.1	-	37008167,37013840	37008848,37013995	0.714286
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	123061164	123061297	123061256	-	High_confidence	18	21	168	7.812529	5.667595	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.982143
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	76740500	76740509	76740508	+	RAMPAGE_only	8	9	15	0.697547	3.039149	chr17	76740464	76740701	SINE|MIR|MIR	+	chr17	76742190	76769840	MFSD11|ENST00000585584.5	+	76742190,76743397,76744321,76745392,76754046,76767385,76769745	76742273,76743456,76744466,76745439,76754087,76767451,76769840	0.866667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	100557725	100557726	100557725	-	High_confidence	8	8	8	0.372025	2.750000	chr8	100557129	100558099	LINE|L2|L2a	+	chr8	100522513	100557756	MSTRG.24577.5	-	100522513,100529522,100533208,100557621	100522771,100529860,100533311,100557756	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	47779747	47779772	47779747	+	High_confidence	8	8	19	0.883560	2.984770	chr19	47779522	47779824	SINE|Alu|AluJo	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	37691866	37691870	37691866	+	RAMPAGE_only	6	6	14	0.651044	2.664498	chr9	37691623	37691908	SINE|Alu|AluSz	+	chr9	37669777	37707502	FRMPD1|ENST00000359927.3	+	37669777,37692637,37707415	37670084,37692742,37707502	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	79492571	79492596	79492595	+	High_confidence	4	4	12	0.558038	2.594907	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.833333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chrX	155719045	155719070	155719045	-	RAMPAGE_only	11	11	32	1.488101	4.349200	chrX	155718901	155722240	LINE|L1|L1M1	+	chrX	155489010	155612961	TMLHE|NM_018196.3	-	155489010,155492356,155506897,155511672,155513985,155524455,155545095,155612791	155491666,155492495,155507134,155511792,155514265,155524632,155545277,155612961	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	56642462	56642470	56642462	-	RAMPAGE_only	7	7	14	0.651044	3.026987	chr12	56642329	56642417	SINE|Alu|AluJb	-	chr12	56638174	56645279	ATP5F1B|ENST00000548474.2	-	56638174,56639105,56645170	56638423,56639196,56645279	0.928571
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	54926409	54926481	54926454	-	RAMPAGE_only	4	4	20	0.930063	3.608695	chr3	54926203	54926446	SINE|MIR|MIR	-	chr3	54918236	54928074	LRTM1|ENST00000273286.5	-	54918236,54924618,54927904	54918892,54925215,54928074	0.600000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	143018394	143018434	143018394	-	High_confidence	5	5	14	0.651044	2.815072	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	5680191	5680241	5680240	-	High_confidence	21	21	132	6.138416	5.216758	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.992424
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr13	52570271	52570283	52570278	+	RAMPAGE_only	4	4	9	0.418528	2.500000	chr13	52569964	52570306	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	56157281	56157333	56157315	+	High_confidence	6	6	39	1.813623	3.797220	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.897436
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	187513652	187513653	187513652	-	High_confidence	4	4	7	0.325522	2.584963	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	0.857143
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	73646058	73646152	73646151	-	RAMPAGE_only	4	4	28	1.302088	4.088221	chr10	73645821	73646123	SINE|Alu|AluY	-	chr10	73644880	73651029	SYNPO2L|ENST00000372873.8	-	73644880,73650907	73648879,73651029	0.964286
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	182243401	182243402	182243401	+	High_confidence	8	8	8	0.372025	2.750000	chr4	182243111	182243414	SINE|Alu|AluSz	-	chr4	182243428	182803024	TENM3|ENST00000511685.5	+	182243428,182323945,182346650,182600923,182628650,182653770,182673004,182679665,182680247,182680542,182681813,182688165,182714086,182728964,182730199,182730877,182736807,182738400,182743169,182751799,182753449,182754384,182773471,182774917,182789092,182792273,182796636,182799595	182243476,182324252,182346929,182601161,182628889,182653893,182673219,182679876,182680349,182680737,182682014,182688351,182714233,182729181,182730319,182731139,182737075,182738544,182743419,182752032,182753604,182755259,182773647,182775153,182789389,182793885,182796767,182803024	0.625000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	102822458	102822459	102822458	-	RAMPAGE_only	7	7	8	0.372025	2.807355	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.875000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	119875413	119875440	119875413	+	RAMPAGE_only	9	15	50	2.325158	5.094102	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.740000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	47944010	47944036	47944035	+	High_confidence	7	7	33	1.534604	3.563247	chr15	47943900	47944299	LTR|ERVL-MaLR|MLT1B	+	chr15	47944043	47949509	AC092078.1|ENST00000558370.1	+	47944043,47949355	47944214,47949509	0.696970
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	53729583	53729618	53729583	-	RAMPAGE_only	3	3	15	0.697547	3.378783	chr8	53729289	53729764	LTR|ERVL|MER70A	-	chr8	53715672	53739623	ATP6V1H|ENST00000522159.5	-	53715672,53739552	53716024,53739623	0.933333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	98943466	98943484	98943483	+	High_confidence	18	20	29	1.348591	3.840403	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	29280838	29280896	29280838	-	High_confidence	29	33	183	8.510077	6.159448	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.639344
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	156252874	156252878	156252874	+	High_confidence	9	9	24	1.116076	4.055958	chr4	156252376	156252875	LTR|ERVL-MaLR|MLT1F2	+	chr4	156252726	156284403	MSTRG.19536.1	+	156252726	156284403	0.916667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	114624940	114625007	114624964	-	High_confidence	14	16	104	4.836328	4.989076	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.740385
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	151685698	151685719	151685698	-	RAMPAGE_only	2	2	7	0.325522	2.521641	chr5	151685561	151685650	SINE|MIR|MIR3	-	chr5	151666372	151686963	SPARC|ENST00000538026.5	-	151666372,151667466,151669663,151671572,151686901	151666509,151667600,151669784,151671694,151686963	0.571429
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	135965718	135965773	135965723	+	High_confidence	41	52	256	11.904807	6.197891	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.992188
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	32927967	32927977	32927976	+	RAMPAGE_only	73	73	147	6.835963	6.006493	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.891156
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	35432451	35432453	35432451	-	High_confidence	6	11	15	0.697547	3.093069	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.933333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	100831435	100831581	100831580	+	High_confidence	10	10	91	4.231787	5.419032	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100831480	100860987	MSTRG.8024.39	+	100831480,100836166,100845457,100860690	100834751,100836300,100845533,100860987	0.989011
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	19386320	19386334	19386333	-	High_confidence	7	9	20	0.930063	3.471354	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.900000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	241235129	241235139	241235129	-	RAMPAGE_only	2	2	6	0.279019	2.584963	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241229438	241230848	HDLBP|ENST00000484412.1	-	241229438,241229832,241230068,241230758	241229687,241229961,241230269,241230848	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	30812437	30812477	30812453	-	High_confidence	9	9	34	1.581107	4.452820	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.941176
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	89888929	89888930	89888929	+	RAMPAGE_only	15	17	21	0.976566	2.960964	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr18	80147918	80147930	80147929	+	High_confidence	4	4	14	0.651044	2.950212	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.857143
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	95516120	95516149	95516122	+	High_confidence	10	16	31	1.441598	3.897587	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	120395840	120395933	120395875	-	RAMPAGE_only	7	7	63	2.929699	5.050489	chr3	120395790	120395849	SINE|MIR|MIR3	-	chr3	120394213	120451071	FSTL1|NM_007085.4	-	120394213,120399882,120402807,120403241,120404852,120409531,120410951,120411853,120415922,120450683,120450896	120396996,120399959,120402918,120403354,120404971,120409662,120410984,120411983,120416027,120450746,120451071	0.952381
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	141333533	141333572	141333561	+	RAMPAGE_only	4	4	17	0.790554	3.452820	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141636595	141733987	IL15|NM_172175.2	+	141636595,141656185,141688821,141719377,141720468,141721058,141721923,141727939,141729846,141732737	141636748,141656307,141689035,141719476,141720566,141721177,141722008,141727984,141729984,141733987	0.529412
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	151958866	151958869	151958866	+	High_confidence	20	22	30	1.395095	3.967720	chr5	151958688	151959037	LTR|ERVL-MaLR|THE1B	+	chr5	151958897	152270445	LINC01933|ENST00000524034.5	+	151958897,152267264,152270194	151958954,152267355,152270445	0.933333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	157487448	157487449	157487448	-	RAMPAGE_only	13	16	17	0.790554	3.155639	chr3	157486755	157488128	LINE|L1|L1ME3C	+	chr3	157460094	157489356	VEPH1|ENST00000482434.1	-	157460094,157470313,157489054	157460355,157470529,157489356	0.823529
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr20	45828146	45828169	45828168	-	High_confidence	3	5	10	0.465032	2.521928	chr20	45828063	45828333	SINE|Alu|AluJb	-	chr20	45823213	45827341	TNNC2|ENST00000372555.7	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827341	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	6737490	6737564	6737490	+	High_confidence	15	33	94	4.371296	4.853657	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.978723
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	31086229	31086269	31086247	-	RAMPAGE_only	10	10	68	3.162214	5.077997	chr16	31086187	31086277	LINE|CR1|L3b	-	chr16	31083423	31088809	PRSS53|NM_001039503.2	-	31083423,31084118,31084557,31084779,31085109,31085963,31086336,31086632,31087536,31087805,31088751	31083809,31084335,31084703,31085024,31085260,31086183,31086491,31086898,31087699,31087826,31088809	0.764706
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	212792444	212792471	212792470	-	High_confidence	5	6	13	0.604541	3.022055	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.769231
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	176823306	176823336	176823335	-	High_confidence	4	4	10	0.465032	3.121928	chr3	176822932	176823885	LTR|ERV1|HUERS-P1-int	-	chr3	176818933	176823618	MSTRG.18263.1	-	176818933	176823618	0.700000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	104907339	104907340	104907339	+	RAMPAGE_only	7	11	11	0.511535	2.913977	chr4	104907196	104907543	LTR|ERVL-MaLR|MLT1I	+	chr4	104973711	105120000	AC096577.1|ENST00000506386.1	+	104973711,105061226,105116828,105119868	104973782,105061474,105116918,105120000	0.636364
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	115110206	115110207	115110206	-	RAMPAGE_only	14	15	20	0.930063	3.721612	chr3	115109927	115110224	SINE|Alu|AluSx	+	chr3	114314499	115071414	ZBTB20|NM_001164343.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114713975,114743711,114874038,114900303,114974365,115071218	114339426,114351878,114380404,114389105,114500391,114693575,114714015,114743779,114874108,114900342,114974416,115071414	0.750000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	66502611	66502741	66502611	-	High_confidence	49	49	498	23.158569	6.475308	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.891566
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	643625	643636	643635	-	High_confidence	42	42	128	5.952403	4.426835	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.968750
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	107266313	107266314	107266313	+	RAMPAGE_only	47	52	53	2.464667	4.136974	chr4	107265946	107266484	LTR|ERVL|MLT2F	+	chr4	107258699	107301870	AC104663.1|ENST00000508555.1	+	107258699,107301488	107258874,107301870	0.924528
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr13	36366196	36366203	36366202	-	RAMPAGE_only	4	4	8	0.372025	2.521641	chr13	36365850	36366258	LINE|L2|L2	+	chr13	36301651	36370136	SPART|ENST00000650221.1	-	36301651,36312144,36312318,36314226,36326574,36329361,36331398,36335020,36368873,36370088	36304632,36312235,36312477,36314421,36326698,36329517,36331596,36335832,36368990,36370136	0.750000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	149371585	149371657	149371598	+	High_confidence	11	11	55	2.557673	4.712798	chr5	149371562	149371710	LINE|L2|L2b	-	chr5	149372173	149375116	AC131025.1|ENST00000521756.1	+	149372173,149374708	149372353,149375116	0.763636
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	70590308	70590335	70590308	+	RAMPAGE_only	5	5	19	0.883560	3.721612	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.842105
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	109594766	109594786	109594781	+	RAMPAGE_only	3	4	10	0.465032	2.503258	chr12	109594704	109594847	LTR|ERVL-MaLR|MLT1K	-	chr12	109587860	109597262	MVK|ENST00000540353.1	+	109587860,109591240,109595027,109596425	109590861,109591357,109595181,109597262	0.900000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	55618869	55618904	55618869	-	High_confidence	4	4	14	0.651044	3.180833	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.785714
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	15657883	15657884	15657883	+	RAMPAGE_only	11	12	12	0.558038	2.913977	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.916667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	53491313	53491350	53491343	+	High_confidence	5	7	24	1.116076	3.913977	chr7	53491282	53491410	DNA|TcMar-Tigger|MER8	-	chr7	53491327	53495335	MSTRG.22902.1	+	53491327	53495335	0.916667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	44914321	44914322	44914321	+	High_confidence	39	39	47	2.185648	4.278253	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.936170
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr18	46087012	46087053	46087052	-	High_confidence	4	4	13	0.604541	3.180833	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.846154
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chrX	134550315	134550335	134550315	+	High_confidence	3	3	8	0.372025	2.521641	chrX	134550356	134550662	LINE|L1|L1MC5a	+	chrX	134550023	134559909	LINC00629|ENST00000592070.1	+	134550023,134558379,134559385	134550225,134558497,134559909	0.750000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	11398985	11399054	11399048	+	RAMPAGE_only	4	4	27	1.255585	4.180451	chr2	11398957	11399426	LTR|ERVL-MaLR|MSTA-int	+	chr2	11393980	11403077	LINC00570|NR_047499.1	+	11393980,11400371,11402024	11394171,11400457,11403077	0.888889
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	30372729	30372746	30372744	+	High_confidence	6	7	13	0.604541	3.084963	chr16	30372675	30373134	LINE|L2|L2b	+	chr16	30372731	30377991	MSTRG.9665.3	+	30372731,30374821,30375819,30376144,30376422,30376619,30377653,30377795	30373016,30374860,30375912,30376220,30376527,30376698,30377702,30377991	0.923077
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr22	37849317	37849347	37849317	-	High_confidence	11	12	36	1.674113	4.215355	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	65564698	65564709	65564698	-	RAMPAGE_only	3	3	11	0.511535	2.663533	chr17	65564452	65564758	SINE|Alu|AluSp	+	chr17	65528562	65561647	AXIN2|ENST00000307078.9	-	65528562,65533911,65535625,65536319,65536868,65537323,65538202,65541454,65549519,65557805,65561449	65530102,65534079,65535721,65536553,65537063,65537835,65538343,65541557,65549660,65558736,65561647	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	42404727	42404748	42404741	+	High_confidence	3	3	9	0.418528	2.750000	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404778	42412315	CAPN3|ENST00000337571.8	+	42404778,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412315	0.555556
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	72833800	72833815	72833814	+	RAMPAGE_only	3	3	8	0.372025	2.521641	chr15	72833851	72833981	LTR|ERVL-MaLR|MLT1L	+	chr15	72846233	72887128	MSTRG.8839.1	+	72846233,72858071,72858323,72886575	72846411,72858173,72858538,72887128	0.750000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	20658312	20658349	20658312	+	High_confidence	16	16	79	3.673749	4.753337	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.860759
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	130421138	130421139	130421138	+	High_confidence	4	4	7	0.325522	2.521641	chr6	130421100	130421286	DNA|hAT-Charlie|MER5A	-	chr6	130421095	130443067	TMEM200A|NM_001258278.1	+	130421095,130440406	130421358,130443067	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr20	50131130	50131151	50131139	-	High_confidence	3	3	14	0.651044	3.085055	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.928571
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	69315797	69315822	69315821	+	High_confidence	4	4	19	0.883560	3.725481	chr10	69315806	69315937	SINE|MIR|MIRc	+	chr10	69315853	69401882	HK1|NM_033496.2	+	69315853,69343826,69359896,69364782,69368535,69369236,69369440,69376933,69379861,69382486,69384332,69384795,69386322,69389196,69392124,69394949,69398594,69400990	69316014,69343989,69360045,69364902,69368631,69369336,69369624,69377089,69380095,69382791,69384481,69384915,69386418,69389296,69392308,69395105,69398828,69401882	0.789474
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	159005961	159005962	159005961	+	High_confidence	27	30	31	1.441598	4.094740	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.967742
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	106541148	106541149	106541148	+	High_confidence	17	19	21	0.976566	3.616349	chr6	106541083	106541354	DNA|hAT-Charlie|MER102c	-	chr6	106541133	106555897	CRYBG1|ENST00000457437.1	+	106541133,106541585,106543439,106544570,106544787,106551851,106552183,106553454,106555767	106541295,106541621,106543597,106544697,106544933,106551978,106552216,106553567,106555897	0.857143
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	143039246	143039267	143039266	+	High_confidence	18	18	50	2.325158	4.855389	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.660000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	7913248	7913268	7913248	-	RAMPAGE_only	6	6	18	0.837057	4.058814	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.777778
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	65244454	65244457	65244454	-	RAMPAGE_only	5	5	9	0.418528	2.641604	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	36584190	36584211	36584190	-	High_confidence	5	5	12	0.558038	2.913977	chr2	36584029	36584427	LTR|ERVL|LTR33	+	chr2	36555682	36584058	FEZ2|ENST00000464964.1	-	36555682,36558437,36578596,36581289,36583352,36584029	36555748,36558513,36578865,36581431,36583469,36584058	0.750000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	4415382	4415384	4415382	+	High_confidence	22	30	33	1.534604	2.821417	chr1	4415149	4415520	LINE|L1|L1ME3G	-	chr1	4416310	4424689	LINC01777|ENST00000635642.1	+	4416310,4422875,4423347,4423993	4416548,4423187,4423448,4424689	0.909091
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	107580245	107580267	107580245	+	High_confidence	466	468	2074	96.447536	7.237899	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.899229
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	45192659	45192666	45192659	-	RAMPAGE_only	77	78	154	7.161485	6.357413	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	0.733766
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	4341380	4341399	4341380	-	RAMPAGE_only	27	27	62	2.883195	4.832056	chr17	4341334	4342347	LINE|L2|L2a	+	chr17	4282898	4331923	UBE2G1|ENST00000571953.5	-	4282898,4289229,4296716,4307020,4331773	4282921,4289408,4296814,4307123,4331923	0.532258
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	53427241	53427250	53427249	+	RAMPAGE_only	4	5	9	0.418528	2.750000	chr12	53427040	53427257	LINE|L2|L2a	-	chr12	53423934	53431473	AMHR2|ENST00000379791.7	+	53423934,53424287,53424708,53425164,53425454,53425688,53428895,53429452,53431176	53423983,53424470,53424900,53425242,53425573,53425919,53429010,53429625,53431473	0.888889
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	67387157	67387158	67387157	-	RAMPAGE_only	9	9	9	0.418528	2.725481	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	38800470	38800482	38800470	+	RAMPAGE_only	12	12	23	1.069572	4.095795	chr6	38800070	38800521	LINE|L1|L1MB8	-	chr6	38723121	39030529	DNAH8|ENST00000359357.7	+	38723121,38723336,38734473,38737066,38737808,38741710,38750475,38755971,38761701,38770412,38775753,38778387,38779965,38781253,38783003,38786764,38789802,38790288,38791554,38803178,38805480,38807609,38814053,38815467,38822837,38823561,38826155,38828183,38832321,38834578,38837941,38842367,38842662,38845573,38848647,38850250,38851571,38852693,38853185,38857517,38860456,38862279,38863872,38866590,38866768,38868061,38870400,38872535,38872905,38873235,38875590,38882909,38883321,38883875,38886790,38890651,38894700,38896032,38898257,38899775,38906253,38907955,38909517,38911467,38913848,38915200,38917238,38917924,38921368,38923057,38923990,38926054,38929510,38931810,38935591,38937973,38938797,38945466,38949451,38951317,38971591,38973660,38974373,38982345,38984205,38990011,39008813,39012214,39012447,39026545,39030104	38723199,38723471,38734625,38737256,38737972,38741887,38750589,38756079,38761803,38770559,38775951,38778464,38780065,38781373,38783139,38786952,38789883,38790405,38791674,38803311,38805596,38807716,38814129,38815657,38823034,38823688,38826391,38828288,38832435,38834641,38838042,38842505,38842903,38845773,38848801,38850414,38851674,38852798,38853347,38857742,38860629,38862458,38864060,38866677,38866876,38868196,38870562,38872782,38873147,38873376,38875828,38883052,38883456,38883998,38887004,38890761,38894864,38896225,38898380,38899906,38906407,38908120,38909744,38911586,38913952,38915377,38917406,38918140,38921506,38923185,38924162,38926210,38929666,38931993,38935697,38938226,38938988,38945588,38949570,38951520,38971665,38973813,38974529,38982462,38984307,38990172,39008970,39012367,39012637,39026667,39030529	0.956522
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	3149794	3149815	3149796	+	RAMPAGE_only	7	10	20	0.930063	3.426367	chr12	3149707	3149875	DNA|hAT-Charlie|MER5A	+	chr12	3201176	3282108	TSPAN9|ENST00000407263.2	+	3201176,3278420,3278991,3280381,3281197,3281733	3201256,3278612,3279066,3280483,3281329,3282108	0.900000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	176463170	176463171	176463170	+	High_confidence	23	23	23	1.069572	3.588354	chr1	176462794	176463370	LTR|ERV1|MER41E	+	chr1	176463170	176691204	PAPPA2|ENST00000367661.7	+	176463170,176555406,176594523,176670969,176690136	176463418,176557241,176595595,176671115,176691204	0.869565
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	141332616	141332617	141332616	-	High_confidence	74	75	76	3.534240	4.306985	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.960526
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	170367483	170367504	170367492	+	RAMPAGE_only	2	2	8	0.372025	2.750000	chr6	170367244	170367559	DNA|hAT-Charlie|MER58B	+	chr6	170404178	170405078	FAM120B|ENST00000496635.1	+	170404178,170404762	170404601,170405078	0.750000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	57961642	57961653	57961647	+	High_confidence	24	24	55	2.557673	4.803643	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961437	57973690	AL445250.1|ENST00000641671.1	+	57961437,57962180,57965516,57971594,57972093	57961742,57962248,57965743,57971656,57973690	0.600000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr20	51732487	51732515	51732497	-	RAMPAGE_only	4	4	16	0.744050	3.500000	chr20	51732437	51732492	LINE|L2|L2c	-	chr20	51596774	51768411	ATP9A|NM_006045.2	-	51596774,51604816,51607526,51608517,51610100,51613676,51617489,51618661,51618953,51622073,51625191,51627599,51628979,51639342,51656937,51669996,51671114,51674152,51676131,51689063,51690738,51694007,51696092,51697423,51712965,51725818,51729833,51768301	51601347,51605020,51607584,51608626,51610165,51613832,51617554,51618806,51619043,51622172,51625362,51627683,51629072,51639504,51657150,51670109,51671257,51674313,51676208,51689139,51690819,51694102,51696144,51697482,51713074,51725932,51729978,51768411	0.937500
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	59619894	59619929	59619894	+	High_confidence	381	426	1490	69.289696	6.139998	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.901342
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	100933089	100933115	100933089	+	RAMPAGE_only	2	2	8	0.372025	2.500000	chr14	100932604	100933608	LINE|L1|L1MC1	-	chr14	100931871	100998541	MSTRG.8024.76	+	100931871,100937402,100938879,100940364,100942761,100944808,100947033,100948977,100949514,100950401,100951431,100953963,100954921,100955884,100958261,100960060,100961026,100963964,100964352,100966644,100967638,100968647,100969458,100972261,100974125,100975410,100980576,100982503,100983460,100984347,100985654,100986618,100987543,100988708,100989693,100991490,100993834,100996885,100997486	100935881,100937488,100938956,100940450,100942838,100944872,100947116,100949039,100949596,100950472,100951494,100954046,100955006,100955949,100958343,100960219,100961132,100964000,100964439,100966731,100967786,100968724,100969545,100972346,100974203,100975496,100980663,100982585,100983542,100984434,100985740,100986706,100987630,100988790,100989780,100991565,100993907,100996916,100998541	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	174874418	174874426	174874418	+	RAMPAGE_only	8	8	15	0.697547	3.182006	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174700730	174990341	RABGAP1L|ENST00000469553.6	+	174700730,174702112,174752312,174811831,174877391,174957456,174957890,174969276,174976077,174978806,174982833,174988640,174989848	174700865,174702256,174752354,174811960,174877605,174957549,174958173,174969387,174976182,174978890,174982905,174988838,174990341	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	167937009	167937014	167937009	-	High_confidence	6	6	14	0.651044	3.093069	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167918067	167937040	MPC2|ENST00000271373.8	-	167918067,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937040	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr18	46087102	46087115	46087102	-	High_confidence	3	3	9	0.418528	2.725481	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.777778
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	172958875	172958919	172958918	+	High_confidence	20	20	46	2.139145	4.112063	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.956522
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	128369561	128369606	128369605	+	RAMPAGE_only	48	50	109	5.068843	4.569044	chr3	128369587	128369654	SINE|MIR|MIRb	+	chr3	128153500	128408642	EEFSEC|ENST00000483457.1	+	128153500,128246835,128262127,128341232,128408068	128153823,128247043,128262224,128341889,128408642	0.981651
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	114759276	114759301	114759276	-	High_confidence	7	7	12	0.558038	3.084963	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	628559	628589	628559	-	RAMPAGE_only	4	4	19	0.883560	3.683542	chr11	628047	628757	LINE|L1|L1MB3	-	chr11	626315	627240	SCT|NM_021920.3	-	626315,626696,626887,627072	626530,626789,626989,627240	0.578947
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	24092970	24093061	24092970	-	RAMPAGE_only	3	3	37	1.720617	4.107018	chr1	24092769	24092942	SINE|MIR|MIR3	-	chr1	24081548	24108439	MYOM3|ENST00000475306.1	-	24081548,24086643,24089537,24090064,24090796,24092173,24092946,24094852,24095441,24097922,24099679,24105919,24107072,24107992	24084639,24086827,24089665,24090118,24090996,24092315,24093108,24094990,24095486,24098011,24099775,24106077,24107232,24108439	0.945946
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	65570451	65570466	65570465	+	High_confidence	5	5	14	0.651044	3.026987	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570451	65615757	LINC01515|ENST00000601979.5	+	65570451,65572934,65585484,65585664,65615635	65570545,65573056,65585567,65585802,65615757	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr22	18149845	18149869	18149845	+	High_confidence	3	3	18	0.837057	3.239098	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.833333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	66401878	66401899	66401878	+	RAMPAGE_only	26	26	42	1.953132	4.855790	chr15	66401474	66401958	LINE|L2|L2c	-	chr15	66386872	66491544	MAP2K1|NM_002755.3	+	66386872,66435026,66436745,66443279,66444655,66481754,66484989,66487227,66489214,66489717,66490501	66387427,66435237,66436892,66443357,66444707,66481879,66485191,66487292,66489276,66489763,66491544	0.833333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	53811930	53811935	53811934	-	High_confidence	6	6	11	0.511535	2.550341	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.545455
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	75626287	75626305	75626304	-	High_confidence	7	7	12	0.558038	3.095795	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.916667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	94070559	94070560	94070559	-	High_confidence	5	6	7	0.325522	2.584963	chr15	94070430	94070669	SINE|5S-Deu-L2|AmnSINE1	-	chr15	94064368	94070820	LINC01579|ENST00000555772.1	-	94064368,94066768,94070523	94065292,94066879,94070820	0.857143
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	100935327	100935397	100935327	+	RAMPAGE_only	3	3	30	1.395095	4.640224	chr14	100934354	100935764	LINE|L1|L1M2	-	chr14	100931871	100998541	MSTRG.8024.76	+	100931871,100937402,100938879,100940364,100942761,100944808,100947033,100948977,100949514,100950401,100951431,100953963,100954921,100955884,100958261,100960060,100961026,100963964,100964352,100966644,100967638,100968647,100969458,100972261,100974125,100975410,100980576,100982503,100983460,100984347,100985654,100986618,100987543,100988708,100989693,100991490,100993834,100996885,100997486	100935881,100937488,100938956,100940450,100942838,100944872,100947116,100949039,100949596,100950472,100951494,100954046,100955006,100955949,100958343,100960219,100961132,100964000,100964439,100966731,100967786,100968724,100969545,100972346,100974203,100975496,100980663,100982585,100983542,100984434,100985740,100986706,100987630,100988790,100989780,100991565,100993907,100996916,100998541	0.600000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	19487898	19487901	19487898	-	High_confidence	30	32	61	2.836692	4.746718	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.622951
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	178679606	178679677	178679658	-	RAMPAGE_only	11	12	72	3.348227	5.480595	chr2	178679617	178679655	LINE|CR1|L3	-	chr2	178636751	178702520	TTN|ENST00000414766.5	-	178636751,178639698,178640047,178640540,178641240,178642236,178673632,178674313,178678124,178678413,178678746,178681660,178682696,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453	178636799,178639788,178640110,178640630,178641315,178642317,178673710,178674409,178678208,178678497,178678830,178681738,178682903,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702520	0.722222
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	149509878	149509883	149509878	-	RAMPAGE_only	3	3	8	0.372025	2.521641	chr5	149509722	149509839	SINE|Alu|AluJb	-	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	83583145	83583146	83583145	-	RAMPAGE_only	14	15	18	0.837057	3.454822	chr6	83583131	83583402	LINE|L2|L2b	+	chr6	83554050	83592982	SNAP91|ENST00000523448.5	-	83554050,83560103,83560863,83575009,83576022,83580449,83582221,83592945	83554285,83560208,83560947,83575121,83576053,83580599,83582356,83592982	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	73982163	73982164	73982163	-	High_confidence	9	9	14	0.651044	2.664498	chr2	73982060	73982404	LINE|L2|L2c	-	chr2	73957966	73981439	DGUOK-AS1|NR_104030.1	-	73957966,73981134	73958207,73981439	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	80517075	80517089	80517088	+	RAMPAGE_only	9	9	18	0.837057	3.794653	chr5	80516845	80517384	DNA|TcMar-Tigger|MER44B	+	chr5	80487985	80542042	FAM151B|ENST00000511718.5	+	80487985,80495052,80499884,80501791,80505942,80510713,80513603,80518763,80519692,80522002,80541672	80488148,80495283,80499985,80501917,80506076,80511086,80513769,80518930,80519910,80522138,80542042	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	134485414	134485471	134485443	-	High_confidence	19	20	113	5.254856	5.762395	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.946903
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	3062922	3062983	3062922	-	High_confidence	26	38	103	4.789825	5.464264	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.970874
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	12522682	12522727	12522682	+	RAMPAGE_only	7	13	26	1.209082	3.979098	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.846154
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr20	45825937	45825966	45825937	-	RAMPAGE_only	8	8	35	1.627610	3.907734	chr20	45825601	45825919	SINE|Alu|AluSp	-	chr20	45823213	45827314	TNNC2|NM_003279.2	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827314	0.942857
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	104763732	104763757	104763755	+	High_confidence	6	10	17	0.790554	3.625000	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NM_018376.3	+	104763740,104766324,104768862,104770848,104772821,104772996	104764300,104766535,104769021,104770998,104772908,104777764	0.941176
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	77088107	77088111	77088110	+	High_confidence	4	5	12	0.558038	2.913977	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.583333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	35894272	35894273	35894272	-	RAMPAGE_only	62	62	67	3.115711	5.195362	chr17	35893744	35894693	LTR|ERVL|MER21A	-	chr17	35893706	35911023	AC015849.5|ENST00000604907.1	-	35893706,35906167	35894323,35911023	0.895522
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	76797566	76797568	76797567	-	High_confidence	72	106	133	6.184919	5.382521	chr15	76797305	76798069	LINE|L1|L1M4	+	chr15	76774931	76797543	SCAPER|ENST00000562890.1	-	76774931,76795279,76797219	76775117,76795440,76797543	0.616541
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	154928480	154928504	154928503	+	High_confidence	14	14	26	1.209082	3.673270	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.884615
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	2757779	2757944	2757779	+	High_confidence	6	6	47	2.185648	4.554173	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.957447
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	44304782	44304804	44304782	-	High_confidence	2	2	8	0.372025	2.750000	chr19	44304575	44304734	SINE|MIR|MIR	-	chr19	44286347	44305025	ZNF235|NM_004234.4	-	44286347,44298807,44299605,44303389,44304970	44289196,44298903,44299732,44303452,44305025	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	36594538	36594548	36594538	-	High_confidence	3	3	9	0.418528	2.725481	chr2	36594337	36594691	LTR|ERVL-MaLR|THE1A	-	chr2	36552257	36594566	FEZ2|ENST00000413938.5	-	36552257,36555682,36558437,36578596,36581289,36581504,36583352,36590902,36594413	36553179,36555748,36558513,36578865,36581431,36581590,36583469,36591011,36594566	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	43881063	43881088	43881087	+	High_confidence	25	30	109	5.068843	4.708543	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.908257
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	31302622	31302629	31302622	+	RAMPAGE_only	3	3	8	0.372025	2.750000	chr7	31302456	31302646	DNA|hAT-Charlie|MER5A	+	chr7	31514070	31653689	ITPRID1|ENST00000615280.4	+	31514070,31549425,31553001,31554474,31554857,31569757,31572101,31574539,31577862,31583133,31642175,31642681,31651141,31651938,31652517	31514120,31549499,31553187,31554523,31554901,31569809,31572188,31574742,31578434,31583191,31642258,31643953,31651269,31652050,31653689	0.750000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	4355592	4355593	4355592	-	High_confidence	205	211	211	9.812165	4.563810	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.962085
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	3536836	3536899	3536845	-	High_confidence	11	11	47	2.185648	4.819985	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.829787
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr21	28048446	28048447	28048446	+	High_confidence	37	39	43	1.999636	4.166509	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.860465
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	54633247	54633259	54633258	+	RAMPAGE_only	8	8	17	0.790554	3.219528	chr14	54633153	54633687	LINE|L2|L2a	-	chr14	54652682	54702396	SAMD4A|ENST00000555091.1	+	54652682,54668791,54702061	54652840,54668845,54702396	0.529412
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	49238568	49238612	49238611	+	RAMPAGE_only	4	6	14	0.651044	3.521641	chr15	49238570	49238713	SINE|MIR|MIR1_Amn	+	chr15	49170477	49328503	GALK2|ENST00000559454.5	+	49170477,49201161,49217189,49235850,49239220,49281986,49283565,49292326,49319603,49327951	49170577,49201250,49217313,49235941,49239367,49282085,49283718,49292537,49319805,49328503	0.714286
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chrX	151958581	151958582	151958581	-	RAMPAGE_only	19	19	19	0.883560	3.281373	chrX	151958580	151958655	DNA|DNA|MER135	-	chrX	151953124	151959723	GABRE|ENST00000486255.1	-	151953124,151955367,151955707	151955084,151955567,151959723	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	103569736	103569764	103569736	-	RAMPAGE_only	6	6	19	0.883560	3.947703	chr12	103565929	103570866	LINE|L1|L1PA17	+	chr12	103301937	103496010	C12orf42|NM_198521.3	-	103301937,103305973,103368886,103401606,103478348,103495901	103302559,103306345,103368998,103401675,103478447,103496010	0.578947
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr20	37228881	37228884	37228883	+	High_confidence	4	6	8	0.372025	2.521641	chr20	37228914	37228969	LINE|L2|L2b	+	chr20	37228677	37241429	RPN2|ENST00000456400.1	+	37228677,37229972,37232295,37234019,37241302	37228744,37230059,37232391,37234095,37241429	0.750000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	22717935	22717938	22717935	-	High_confidence	370	381	761	35.388898	7.116638	chr6	22717913	22718256	DNA|hAT-Ac|OldhAT1	-	chr6	22654159	22717924	LOC105374972|NR_134613.1	-	22654159,22717720	22654704,22717924	0.508541
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	30373014	30373016	30373014	+	High_confidence	62	95	109	5.068843	4.603548	chr16	30372675	30373134	LINE|L2|L2b	+	chr16	30372731	30377991	MSTRG.9665.3	+	30372731,30374821,30375819,30376144,30376422,30376619,30377653,30377795	30373016,30374860,30375912,30376220,30376527,30376698,30377702,30377991	0.972477
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	7555293	7555327	7555293	-	RAMPAGE_only	11	11	49	2.278654	4.530640	chr7	7555240	7555694	LTR|ERVL|LTR16A	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	110214978	110215013	110214990	-	RAMPAGE_only	4	4	10	0.465032	2.521928	chr2	110214337	110215125	LTR|ERVL|MER21B	-	chr2	110211528	110222940	LINC00116|NR_027063.1	-	110211528,110212214,110214785,110215676,110216663,110217658,110219650,110222736	110211622,110212875,110214957,110215807,110216763,110217788,110219777,110222940	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	1810938	1810940	1810938	+	RAMPAGE_only	9	13	15	0.697547	2.842371	chr5	1810886	1811314	DNA|TcMar-Tigger|Tigger2a	+	chr5	1801414	1814699	NDUFS6|ENST00000469176.1	+	1801414,1802320,1814338	1801549,1802374,1814699	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	78964100	78964112	78964111	+	RAMPAGE_only	11	12	21	0.976566	4.037401	chr12	78964126	78964183	LINE|L2|L2b	+	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	51338597	51338598	51338597	-	High_confidence	160	162	185	8.603083	6.448076	chr15	51338475	51338990	LTR|ERVL|MER21A	-	chr15	51212526	51338598	CYP19A1|ENST00000439712.6	-	51212526,51215069,51215702,51218540,51222348,51227778,51236858,51242767,51255517,51338494	51212561,51215232,51215817,51218655,51222525,51227933,51237009,51242950,51255761,51338598	0.529730
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chrX	16712861	16712900	16712889	-	High_confidence	22	27	91	4.231787	5.379542	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	38800546	38800553	38800546	+	RAMPAGE_only	3	6	17	0.790554	3.625000	chr6	38800521	38800821	SINE|Alu|AluSz	-	chr6	38723121	39030529	DNAH8|ENST00000359357.7	+	38723121,38723336,38734473,38737066,38737808,38741710,38750475,38755971,38761701,38770412,38775753,38778387,38779965,38781253,38783003,38786764,38789802,38790288,38791554,38803178,38805480,38807609,38814053,38815467,38822837,38823561,38826155,38828183,38832321,38834578,38837941,38842367,38842662,38845573,38848647,38850250,38851571,38852693,38853185,38857517,38860456,38862279,38863872,38866590,38866768,38868061,38870400,38872535,38872905,38873235,38875590,38882909,38883321,38883875,38886790,38890651,38894700,38896032,38898257,38899775,38906253,38907955,38909517,38911467,38913848,38915200,38917238,38917924,38921368,38923057,38923990,38926054,38929510,38931810,38935591,38937973,38938797,38945466,38949451,38951317,38971591,38973660,38974373,38982345,38984205,38990011,39008813,39012214,39012447,39026545,39030104	38723199,38723471,38734625,38737256,38737972,38741887,38750589,38756079,38761803,38770559,38775951,38778464,38780065,38781373,38783139,38786952,38789883,38790405,38791674,38803311,38805596,38807716,38814129,38815657,38823034,38823688,38826391,38828288,38832435,38834641,38838042,38842505,38842903,38845773,38848801,38850414,38851674,38852798,38853347,38857742,38860629,38862458,38864060,38866677,38866876,38868196,38870562,38872782,38873147,38873376,38875828,38883052,38883456,38883998,38887004,38890761,38894864,38896225,38898380,38899906,38906407,38908120,38909744,38911586,38913952,38915377,38917406,38918140,38921506,38923185,38924162,38926210,38929666,38931993,38935697,38938226,38938988,38945588,38949570,38951520,38971665,38973813,38974529,38982462,38984307,38990172,39008970,39012367,39012637,39026667,39030529	0.882353
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	95042510	95042539	95042515	-	RAMPAGE_only	3	5	16	0.744050	3.506891	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.687500
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chrX	73841876	73841887	73841886	-	High_confidence	4	4	10	0.465032	2.646439	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr22	32059169	32059191	32059169	+	High_confidence	15	17	40	1.860126	3.773214	chr22	32059153	32059234	SINE|Alu|AluSz6	+	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	0.925000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	77175252	77175260	77175252	+	High_confidence	5	5	12	0.558038	2.522055	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.916667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	10844298	10844421	10844373	+	RAMPAGE_only	23	23	83	3.859762	4.800546	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10878266	10885118	LOC101929733|NR_110575.1	+	10878266,10884833	10878444,10885118	0.698795
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	107719695	107719701	107719695	-	High_confidence	35	37	54	2.511170	4.483618	chr11	107719646	107719884	LTR|Gypsy?|LTR88c	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.944444
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	179527788	179527801	179527798	-	RAMPAGE_only	7	9	22	1.023069	3.499228	chr3	179527648	179527777	LTR|ERV1|LTR37B	-	chr3	179396088	179451590	GNB4|ENST00000232564.7	-	179396088,179405189,179413411,179413714,179414884,179416492,179419398,179420888,179426143,179451345	179401319,179405406,179413613,179413781,179415047,179416556,179419505,179420927,179426242,179451590	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	140700445	140700452	140700445	+	High_confidence	595	717	1258	58.500964	4.811015	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.988871
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	9775640	9775676	9775675	+	High_confidence	20	20	51	2.371661	4.944594	chr11	9775466	9776058	LTR|ERVL|MER21C	+	chr11	9775730	9808379	SBF2-AS1|ENST00000534671.1	+	9775730,9780375,9807847	9775765,9780575,9808379	0.725490
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	31121337	31121338	31121337	-	RAMPAGE_only	6	6	8	0.372025	2.750000	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.875000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	80485592	80485605	80485592	+	High_confidence	5	5	11	0.511535	2.921928	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.727273
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	110216744	110216745	110216744	-	RAMPAGE_only	15	15	22	1.023069	3.784942	chr2	110216296	110216798	LINE|L2|L2a	+	chr2	110211528	110222940	LINC00116|NR_027063.1	-	110211528,110212214,110214785,110215676,110216663,110217658,110219650,110222736	110211622,110212875,110214957,110215807,110216763,110217788,110219777,110222940	0.772727
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	176823276	176823277	176823276	-	RAMPAGE_only	13	13	19	0.883560	3.932138	chr3	176822932	176823885	LTR|ERV1|HUERS-P1-int	-	chr3	176604142	176635532	LINC01208|ENST00000434969.1	-	176604142,176634344,176635440	176604686,176634535,176635532	0.578947
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	74199385	74199405	74199404	+	High_confidence	27	28	49	2.278654	4.425557	chr8	74199086	74199513	LINE|L2|L2a	+	chr8	74199395	74208441	AC087627.1|ENST00000522339.2	+	74199395,74207358,74207720	74199532,74207493,74208441	0.938776
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	16277868	16277890	16277868	+	RAMPAGE_only	2	2	8	0.372025	2.521641	chr6	16277565	16277912	LINE|L2|L2b	-	chr6	16289517	16295544	GMPR|ENST00000544145.1	+	16289517,16290461,16295005	16289568,16290621,16295544	0.750000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	8647118	8647136	8647118	-	RAMPAGE_only	3	3	9	0.418528	2.500000	chr12	8646945	8647082	SINE|MIR|MIR3	-	chr12	8645955	8662812	MFAP5|ENST00000359478.6	-	8645955,8649500,8650501,8651661,8654436,8655414,8655785,8660862,8662046,8662626	8648203,8649574,8650589,8651691,8654481,8655447,8655830,8660898,8662106,8662812	0.777778
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	118835953	118835954	118835953	-	High_confidence	10	10	12	0.558038	2.688722	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	24109180	24109195	24109180	-	RAMPAGE_only	4	4	15	0.697547	2.950212	chr1	24109069	24109203	LINE|L2|L2b	+	chr1	24056036	24112175	MYOM3|ENST00000374434.3	-	24056036,24058923,24061059,24061272,24061945,24063125,24063491,24064071,24065890,24067020,24067969,24068222,24071116,24071968,24074159,24075318,24076158,24080015,24081329,24082000,24082592,24084467,24086643,24089537,24090064,24090796,24092173,24092946,24094852,24095441,24097922,24099679,24105919,24107072,24107992,24108475,24112030	24057627,24058979,24061082,24061309,24062109,24063234,24063530,24064159,24066001,24067088,24068029,24068367,24071253,24072013,24074269,24075475,24076273,24080194,24081456,24082188,24082714,24084639,24086827,24089665,24090118,24090996,24092315,24093108,24094990,24095486,24098011,24099775,24106077,24107232,24108073,24108654,24112175	0.800000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	4143199	4143244	4143199	+	High_confidence	74	74	165	7.673020	5.221164	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.951515
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	217842161	217842185	217842181	-	High_confidence	8	8	38	1.767120	3.999862	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.947368
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	2881285	2881286	2881285	-	High_confidence	11	11	11	0.511535	3.095795	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	149372443	149372451	149372450	-	RAMPAGE_only	5	5	11	0.511535	2.663533	chr5	149372277	149372546	LINE|RTE-X|L5	+	chr5	149371323	149374342	IL17B|ENST00000518814.1	-	149371323,149372203,149374290	149371613,149372333,149374342	0.727273
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	68662575	68662584	68662578	+	RAMPAGE_only	2	2	9	0.418528	2.500000	chr14	68661686	68662782	LINE|CR1|L3	-	chr14	67887101	68683171	RAD51B|ENST00000478014.5	+	67887101,68291883,68411423,68468171,68682936	67887204,68291980,68411527,68468250,68683171	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr21	23384863	23384873	23384865	-	High_confidence	15	19	30	1.395095	4.440224	chr21	23384605	23385150	LTR|ERVL|MLT2B3	-	chr21	23361103	23384861	D21S2088E|ENST00000262354.4	-	23361103,23364037,23372326,23372947,23384687	23362239,23364193,23372448,23373084,23384861	0.533333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	36584049	36584055	36584049	-	High_confidence	8	9	24	1.116076	3.295357	chr2	36584029	36584427	LTR|ERVL|LTR33	+	chr2	36555682	36584058	FEZ2|ENST00000464964.1	-	36555682,36558437,36578596,36581289,36583352,36584029	36555748,36558513,36578865,36581431,36583469,36584058	0.875000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	100910249	100910301	100910288	+	RAMPAGE_only	8	8	33	1.534604	4.438067	chr14	100910200	100910300	SINE|MIR|MIRc	+	chr14	100907042	100927413	MSTRG.8024.70	+	100907042,100916678	100916658,100927413	0.757576
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	124345081	124345094	124345091	-	RAMPAGE_only	4	4	14	0.651044	3.521641	chr8	124345029	124345428	LTR|ERV1|MER57C1	+	chr8	124306188	124352421	MSTRG.24765.1	-	124306188,124320085,124322104,124323320,124327353,124330747,124344897	124314061,124320191,124322147,124323375,124327421,124330792,124352421	0.642857
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	53464780	53464816	53464815	+	RAMPAGE_only	4	4	15	0.697547	3.056565	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.866667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	153967486	153967498	153967486	+	High_confidence	14	14	29	1.348591	3.930270	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.551724
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	45450744	45450766	45450757	-	High_confidence	15	15	41	1.906629	4.653056	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.682927
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	66730122	66730157	66730122	-	High_confidence	3	3	12	0.558038	2.663533	chr16	66729779	66730080	SINE|Alu|AluSx1	-	chr16	66723584	66730219	DYNC1LI2|ENST00000569320.5	-	66723584,66725827,66727687,66729039,66730111	66723822,66725944,66727805,66729099,66730219	0.833333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	128185577	128185578	128185577	-	RAMPAGE_only	9	9	13	0.604541	2.507380	chr9	128185400	128185541	SINE|MIR|MIR3	-	chr9	128166151	128190710	CIZ1|ENST00000415526.5	-	128166151,128166758,128167094,128169051,128169405,128170019,128176350,128177565,128178368,128178708,128180414,128180720,128185546,128190328,128190687	128166406,128166880,128167164,128169201,128169519,128170107,128176475,128177763,128178490,128179415,128180523,128180799,128185776,128190444,128190710	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	100935184	100935192	100935184	+	RAMPAGE_only	3	3	6	0.279019	2.584963	chr14	100934354	100935764	LINE|L1|L1M2	-	chr14	100931871	100998541	MSTRG.8024.76	+	100931871,100937402,100938879,100940364,100942761,100944808,100947033,100948977,100949514,100950401,100951431,100953963,100954921,100955884,100958261,100960060,100961026,100963964,100964352,100966644,100967638,100968647,100969458,100972261,100974125,100975410,100980576,100982503,100983460,100984347,100985654,100986618,100987543,100988708,100989693,100991490,100993834,100996885,100997486	100935881,100937488,100938956,100940450,100942838,100944872,100947116,100949039,100949596,100950472,100951494,100954046,100955006,100955949,100958343,100960219,100961132,100964000,100964439,100966731,100967786,100968724,100969545,100972346,100974203,100975496,100980663,100982585,100983542,100984434,100985740,100986706,100987630,100988790,100989780,100991565,100993907,100996916,100998541	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	87213721	87213742	87213741	+	RAMPAGE_only	6	11	18	0.837057	3.683542	chr6	87213283	87213856	LTR|ERV1|LTR10A	-	chr6	87210448	87222867	MSTRG.21867.7	+	87210448,87213330,87213901,87214997,87215902,87216298,87218595,87222769	87210807,87213435,87214069,87215142,87216057,87216377,87218731,87222867	0.777778
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	12522253	12522266	12522253	+	RAMPAGE_only	6	6	15	0.697547	3.640224	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.866667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	39183718	39183745	39183718	-	RAMPAGE_only	3	3	15	0.697547	3.006239	chr17	39183514	39183691	SINE|MIR|MIRb	-	chr17	39177135	39197702	CACNB1|ENST00000394310.7	-	39177135,39177983,39183712,39184030,39184324,39184783,39185130,39186495,39186792,39187478,39191473,39194883,39197411	39177535,39178079,39183864,39184140,39184383,39184864,39185150,39186572,39186929,39187601,39191593,39194970,39197702	0.800000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	86058636	86058638	86058636	-	RAMPAGE_only	10	15	22	1.023069	3.970573	chr4	86058305	86058671	LTR|ERVL|LTR33A_	+	chr4	86016479	86065603	MAPK10|ENST00000641058.1	-	86016479,86029196,86031367,86064265	86017370,86029274,86031431,86065603	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	92536601	92536602	92536601	-	High_confidence	20	20	20	0.930063	4.221928	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.600000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	106450815	106450822	106450821	+	High_confidence	16	20	30	1.395095	4.351823	chr9	106450433	106450967	LTR|ERVL-MaLR|MLT1G1	+	chr9	106450815	106604795	LINC01505|ENST00000425709.1	+	106450815,106558471,106588376,106603755	106450888,106558583,106588464,106604795	0.766667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	147760601	147760602	147760601	-	High_confidence	5	5	8	0.372025	2.500000	chr1	147760317	147760652	LINE|L2|L2c	+	chr1	147756198	147760606	GJA5|ENST00000579774.2	-	147756198,147760498	147759271,147760606	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	151434750	151434823	151434770	+	High_confidence	38	38	253	11.765297	6.294668	chr5	151434626	151434950	LTR|ERVL-MaLR|MLT1A0	+	chr5	151434726	151435107	MSTRG.20831.1	+	151434726	151435107	0.545455
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	34988745	34988768	34988767	-	High_confidence	5	6	14	0.651044	2.896292	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	46103666	46103699	46103666	+	RAMPAGE_only	3	5	17	0.790554	3.292770	chr6	46103267	46103797	LTR|ERV1|LTR49	+	chr6	46129963	46146699	ENPP4|NM_014936.4	+	46129963,46139550,46141051,46143275	46130189,46140409,46141222,46146699	0.882353
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	2205780	2205851	2205804	+	High_confidence	9	12	78	3.627246	4.129629	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.948718
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	47943932	47943962	47943961	+	High_confidence	3	3	7	0.325522	2.584963	chr15	47943900	47944299	LTR|ERVL-MaLR|MLT1B	+	chr15	47944043	47949509	AC092078.1|ENST00000558370.1	+	47944043,47949355	47944214,47949509	0.857143
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	12007574	12007575	12007574	+	High_confidence	6	6	8	0.372025	2.500000	chr6	12007545	12007597	DNA|hAT-Blackjack|MER94	+	chr6	12007669	12008856	AL157373.2|ENST00000437559.1	+	12007669,12007940,12008278	12007826,12007989,12008856	0.875000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	25148942	25148943	25148942	-	High_confidence	16	19	23	1.069572	3.880180	chr16	25148832	25149129	LTR|ERV1|LTR35	-	chr16	25140570	25149032	LCMT1-AS2|NR_039998.1	-	25140570,25146247,25148705	25140858,25148239,25149032	0.695652
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chrY	4036482	4036532	4036482	+	High_confidence	4	4	24	1.116076	3.720176	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	0.958333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	32403105	32403147	32403127	-	RAMPAGE_only	2	2	10	0.465032	2.947703	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.800000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr13	106561950	106561951	106561950	-	High_confidence	33	33	37	1.720617	4.844324	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.513514
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	59892716	59892746	59892716	-	High_confidence	9	9	21	0.976566	3.784942	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.571429
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	60182553	60182554	60182553	-	High_confidence	4	4	6	0.279019	2.584963	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60172670	60183031	MS4A6A|ENST00000533023.5	-	60172670,60175505,60181580,60182977	60173129,60175611,60181741,60183031	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr18	60447218	60447277	60447246	+	RAMPAGE_only	19	21	84	3.906265	6.037690	chr18	60443442	60447792	LINE|L1|L1PA11	-	chr18	60329232	60538595	AC091576.1|ENST00000650201.1	+	60329232,60479570,60535632,60538299	60329345,60479672,60535755,60538595	0.607143
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	4239738	4239752	4239748	-	High_confidence	8	8	21	0.976566	3.499228	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.857143
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	23417917	23418013	23417917	-	RAMPAGE_only	15	17	141	6.556944	5.876060	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.907801
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	192925749	192925807	192925803	-	High_confidence	18	18	43	1.999636	4.773270	chr1	192925361	192925790	DNA|TcMar-Tigger|Tigger2a	-	chr1	192725880	192925752	AL390957.1|ENST00000645822.1	-	192725880,192764807,192766038,192792298,192826903,192925611	192726838,192764955,192766194,192792468,192826961,192925752	0.627907
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	155567681	155567694	155567685	-	RAMPAGE_only	4	4	14	0.651044	3.392747	chr7	155567524	155567648	LTR|ERVL-MaLR|MSTA	-	chr7	155502013	155555450	CNPY1|ENST00000636372.1	-	155502013,155503020,155507019,155508893,155545830,155554552	155502875,155503105,155507116,155509097,155545943,155555450	0.785714
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	86453149	86453191	86453184	-	High_confidence	5	6	24	1.116076	3.688722	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016014	86453185	MAPK10|ENST00000641634.1	-	86016014,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194318,86354529,86429677,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86429805,86453185	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr18	9849550	9849624	9849550	+	RAMPAGE_only	5	5	27	1.255585	3.661933	chr18	9849471	9850083	LINE|L2|L2a	-	chr18	9856043	9859520	RAB31|ENST00000577284.1	+	9856043,9859227	9856354,9859520	0.518519
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	27612576	27612577	27612576	+	High_confidence	22	22	25	1.162579	3.636842	chr14	27612284	27612881	LTR|ERVL|LTR66	+	chr14	27612587	27639636	LINC00645|ENST00000557359.5	+	27612587,27613420,27634243,27636419	27612677,27613496,27634344,27639636	0.640000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	158172987	158173025	158173024	-	High_confidence	68	69	147	6.835963	5.809672	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158124603	158173007	MSTRG.19550.2	-	158124603,158155610,158170465,158170843,158172872	158131012,158155825,158170766,158171599,158173007	0.918367
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	100913236	100913445	100913310	+	RAMPAGE_only	8	9	120	5.580378	4.878559	chr14	100913266	100913386	LINE|L1|L1ME5	+	chr14	100907042	100927413	MSTRG.8024.70	+	100907042,100916678	100916658,100927413	0.800000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr20	45825524	45825556	45825524	-	RAMPAGE_only	6	6	28	1.302088	3.553090	chr20	45825287	45825591	SINE|Alu|AluSx	-	chr20	45823213	45827314	TNNC2|NM_003279.2	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827314	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr22	18029384	18029419	18029384	+	High_confidence	15	15	27	1.255585	3.661226	chr22	18029082	18029800	LINE|CR1|L3	+	chr22	18029384	18037968	FLJ41941|NR_024417.1	+	18029384,18035759	18029554,18037968	0.777778
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	129724069	129724117	129724116	-	RAMPAGE_only	8	8	44	2.046139	4.706718	chr3	129724100	129724190	LINE|CR1|L3	+	chr3	129670107	129726862	MSTRG.17889.6	-	129670107,129723963	129671264,129726862	0.977273
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr22	27920133	27920134	27920133	-	High_confidence	5	5	8	0.372025	2.521641	chr22	27919974	27920411	LINE|L2|L2b	-	chr22	27860195	27920134	PITPNB|ENST00000415296.5	-	27860195,27873737,27894554,27896551,27897129,27897800,27910963,27914316,27919810	27860241,27873815,27894638,27896626,27897137,27897892,27911109,27914347,27920134	0.625000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	109726320	109726387	109726320	+	High_confidence	20	20	70	3.255221	5.466933	chr9	109726109	109726612	LTR|ERVL-MaLR|MLT1N2	+	chr9	109726306	109954572	MSTRG.25551.2	+	109726306,109867490,109880550,109923734,109925060,109931926,109942685	109726519,109867571,109880681,109923849,109925082,109932028,109954572	0.571429
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	150125445	150125476	150125475	-	RAMPAGE_only	3	3	9	0.418528	2.750000	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150120926	150155627	MSTRG.20810.5	-	150120926,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150155396	150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150155627	0.888889
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	78600124	78600130	78600124	+	RAMPAGE_only	11	12	25	1.162579	3.913270	chr4	78599930	78600224	LTR|ERV1|MER92A	-	chr4	78601863	78610451	ANXA3|ENST00000503776.2	+	78601863,78610055	78604399,78610451	0.680000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	40987022	40987087	40987057	-	High_confidence	22	27	71	3.301724	5.536286	chr17	40986869	40987070	LINE|L2|L2c	+	chr17	40977715	40987001	KRT40|ENST00000461923.5	-	40977715,40978803,40980784,40980989,40982306,40983045,40983826,40986303,40986921	40978296,40979024,40980910,40981324,40982463,40983128,40984274,40986374,40987001	0.788732
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	43525091	43525092	43525091	+	High_confidence	9	9	12	0.558038	3.251629	chr1	43524527	43525317	LINE|L2|L2c	-	chr1	43525186	43553519	PTPRF|ENST00000496043.5	+	43525186,43528656,43538197,43545030,43553491	43525257,43528756,43538277,43545166,43553519	0.833333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	129489063	129489126	129489125	+	High_confidence	11	11	30	1.395095	3.937193	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.833333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr21	42925626	42925633	42925632	-	High_confidence	5	5	9	0.418528	2.641604	chr21	42925506	42925876	LTR|ERV1|MER48	-	chr21	42916802	42925646	ERVH48-1|ENST00000447535.1	-	42916802,42925345	42919291,42925646	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	156252714	156252759	156252747	+	High_confidence	48	55	199	9.254127	5.828720	chr4	156252376	156252875	LTR|ERVL-MaLR|MLT1F2	+	chr4	156252726	156284403	MSTRG.19536.1	+	156252726	156284403	0.979899
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	89272819	89272887	89272819	-	High_confidence	3	4	19	0.883560	3.572431	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89262697	89272804	GBP5|ENST00000443807.1	-	89262697,89263735,89264685,89266345,89266956,89267416,89268728,89269365	89262785,89263948,89264966,89266588,89267153,89267526,89268856,89272804	0.947368
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	2242922	2242923	2242922	+	High_confidence	12	12	12	0.558038	3.251629	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	158167223	158167229	158167223	-	RAMPAGE_only	11	13	21	0.976566	3.721928	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158124579	158172566	FAM198B|NM_016613.6	-	158124579,158130785,158155610,158170465,158172338	158127614,158131012,158155825,158171599,158172566	0.952381
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr13	110179297	110179398	110179297	-	RAMPAGE_only	10	10	115	5.347862	4.953603	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	0.991304
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	31119083	31119121	31119088	-	High_confidence	4	4	16	0.744050	3.500000	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.937500
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	27716397	27716438	27716437	+	RAMPAGE_only	3	3	12	0.558038	3.251629	chr12	27716483	27716564	LINE|L2|L2	+	chr12	27710886	27737608	MRPS35|ENST00000542199.1	+	27710886,27714779,27716290,27719807,27724046,27725576,27735446,27737538	27710955,27714820,27716458,27719868,27724186,27725667,27735556,27737608	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	21200825	21200844	21200825	+	High_confidence	15	15	27	1.255585	3.912114	chr6	21200835	21201081	LINE|L1|L1MC3	+	chr6	21200811	21231441	CDKAL1|ENST00000476517.1	+	21200811,21201109,21230847	21200892,21201274,21231441	0.962963
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	246689685	246689712	246689711	+	High_confidence	3	3	13	0.604541	3.238901	chr1	246689571	246689829	LTR|ERVL|LTR41	+	chr1	246690046	246691821	AL591848.2|ENST00000442712.1	+	246690046,246691467	246690214,246691821	0.769231
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	158660263	158660264	158660263	+	High_confidence	12	12	13	0.604541	3.251629	chr3	158660248	158660547	SINE|Alu|AluSq2	-	chr3	158660263	158665407	GFM1|ENST00000490261.1	+	158660263,158660873,158662627,158665336	158660624,158660975,158662684,158665407	0.769231
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	67886734	67886756	67886734	+	RAMPAGE_only	18	18	38	1.767120	4.668913	chr14	67886207	67886761	LTR|ERVL-MaLR|MLT1F2	-	chr14	67819811	67922455	MSTRG.7618.5	+	67819811,67823541,67825463,67835079,67865002,67885868,67887020,67921308	67819853,67823627,67825577,67835196,67865139,67885988,67921088,67922455	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	13477897	13477918	13477897	+	RAMPAGE_only	5	5	15	0.697547	2.573557	chr9	13476790	13478011	LINE|L1|L1PA15	-	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	9407491	9407507	9407506	-	RAMPAGE_only	96	118	240	11.160756	5.674777	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9398354	9414851	AC141557.1|ENST00000540982.1	-	9398354,9400235,9402426,9414802	9398484,9400326,9402556,9414851	0.654167
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	101852660	101852704	101852703	-	RAMPAGE_only	12	12	76	3.534240	5.566685	chr8	101852677	101852948	DNA|hAT-Charlie|MER102c	-	chr8	101686541	101791211	NCALD|NM_032041.2	-	101686541,101692790,101719251,101790861	101689406,101692896,101719648,101791211	0.526316
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	116554807	116554830	116554829	-	High_confidence	3	3	8	0.372025	2.750000	chr5	116554799	116555125	SINE|tRNA|LFSINE_Vert	-	chr5	116496250	116554896	SEMA6A|ENST00000509665.1	-	116496250,116497326,116502209,116504844,116554738	116496313,116497387,116502327,116504982,116554896	0.875000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	107266137	107266201	107266168	+	RAMPAGE_only	8	8	61	2.836692	5.188234	chr4	107265946	107266484	LTR|ERVL|MLT2F	+	chr4	107258699	107301870	AC104663.1|ENST00000508555.1	+	107258699,107301488	107258874,107301870	0.655738
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	39810023	39810118	39810033	-	High_confidence	23	23	137	6.370932	4.989312	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.861314
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr20	45825348	45825406	45825405	-	RAMPAGE_only	39	50	162	7.533511	4.750987	chr20	45825287	45825591	SINE|Alu|AluSx	-	chr20	45823213	45827314	TNNC2|NM_003279.2	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827314	0.987654
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	2726956	2726963	2726962	+	High_confidence	21	21	50	2.325158	4.576415	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.720000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	100922089	100922128	100922089	+	RAMPAGE_only	3	3	10	0.465032	2.721928	chr14	100921326	100923195	LINE|L1|L1PB1	-	chr14	100907042	100927413	MSTRG.8024.70	+	100907042,100916678	100916658,100927413	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	9567416	9567426	9567416	+	RAMPAGE_only	4	4	12	0.558038	2.913977	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9557313	9576275	AC092821.1|ENST00000520314.2	+	9557313,9558368,9559174,9560109,9560816,9565091,9567489,9570765,9571460,9573002,9573465,9574846	9557580,9558452,9559348,9560191,9564325,9565303,9569202,9570892,9571573,9573093,9573534,9576275	0.916667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	68975836	68975846	68975845	-	High_confidence	4	4	11	0.511535	2.921928	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.636364
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	128921399	128921413	128921399	+	High_confidence	6	6	11	0.511535	2.732159	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	122400979	122401004	122400979	+	RAMPAGE_only	4	4	18	0.837057	3.381580	chr10	122400798	122401057	LINE|L2|L2c	-	chr10	122393127	122432354	PLEKHA1|ENST00000433307.2	+	122393127,122397917,122400342,122406575,122412919,122415858,122417899,122424198,122424895,122426941,122429623	122393341,122397974,122400388,122406673,122413045,122416002,122417968,122424263,122424959,122427031,122432354	0.722222
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	56835476	56835483	56835481	-	High_confidence	13	16	26	1.209082	4.053509	chr19	56835430	56835525	LINE|L2|L2c	+	chr19	56774593	56836078	ZIM2|ENST00000597281.5	-	56774593,56779376,56781952,56782399,56789871,56818599,56821650,56822752,56823589,56824261,56826387,56836017	56775529,56779472,56782121,56782471,56789951,56818702,56821754,56822836,56823679,56824427,56826463,56836078	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	139344529	139344555	139344547	+	High_confidence	15	15	37	1.720617	4.378240	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.972973
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	19344388	19344417	19344388	-	RAMPAGE_only	5	5	21	0.976566	3.880180	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	176823359	176823383	176823382	-	High_confidence	4	4	10	0.465032	3.121928	chr3	176822932	176823885	LTR|ERV1|HUERS-P1-int	-	chr3	176818933	176823618	MSTRG.18263.1	-	176818933	176823618	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	120534000	120534050	120534043	-	RAMPAGE_only	23	26	143	6.649951	6.224510	chr9	120533823	120534313	LINE|L2|L2c	+	chr9	120406145	120536437	CDK5RAP2|ENST00000483412.5	-	120406145,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349,120487293,120491306,120518426,120524985,120527805,120528743,120529977,120536371	120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477450,120487437,120491477,120518645,120525078,120527925,120528797,120530140,120536437	0.972028
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	78387947	78387964	78387960	+	RAMPAGE_only	4	4	14	0.651044	3.521641	chr5	78382819	78388024	LINE|L1|L1PB1	-	chr5	78360804	78416588	SCAMP1|ENST00000510030.2	+	78360804,78388836,78415519,78416540	78361056,78388914,78415618,78416588	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	30376274	30376276	30376275	+	RAMPAGE_only	17	21	26	1.209082	3.751629	chr16	30376276	30376356	SINE|MIR|MIR3	+	chr16	30377562	30377991	MYLPF|ENST00000563728.1	+	30377562,30377795	30377702,30377991	0.923077
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	27064421	27064445	27064444	-	RAMPAGE_only	20	21	53	2.464667	5.157432	chr10	27064434	27064476	LTR|ERV1|MER57B2	+	chr10	27004297	27100492	ANKRD26|ENST00000376087.4	-	27004297,27006916,27012881,27014493,27017501,27022557,27024446,27028851,27029285,27033224,27034795,27037185,27037870,27039964,27043425,27044156,27046352,27048800,27053319,27060344,27060511,27061143,27063987,27066486,27067156,27077337,27077632,27079088,27082802,27086538,27092405,27093348,27093684,27100084	27005723,27006962,27013110,27014711,27017792,27022687,27024559,27028945,27029356,27033377,27035752,27037323,27038054,27040178,27043567,27044190,27046523,27048979,27053390,27060417,27060540,27061242,27064081,27066548,27067286,27077540,27077693,27079161,27082833,27086609,27092512,27093522,27093799,27100492	0.830189
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	158660304	158660321	158660320	+	High_confidence	6	6	15	0.697547	3.373557	chr3	158660248	158660547	SINE|Alu|AluSq2	-	chr3	158660263	158665407	GFM1|ENST00000490261.1	+	158660263,158660873,158662627,158665336	158660624,158660975,158662684,158665407	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	100935606	100935665	100935606	+	RAMPAGE_only	2	2	14	0.651044	3.085055	chr14	100934354	100935764	LINE|L1|L1M2	-	chr14	100907042	100967040	MSTRG.8024.69	+	100907042,100910232,100913431,100935771,100938879,100940364,100942761,100944808,100947033,100948977,100949514,100950401,100951431,100953963,100954921,100955884,100958261,100959801,100961026,100963964,100964352,100966644	100907132,100910304,100913521,100937488,100938956,100940450,100942838,100944872,100947116,100949039,100949596,100950472,100951494,100954046,100955006,100955949,100958343,100960219,100961132,100964000,100964439,100967040	0.928571
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	127084214	127084234	127084221	-	High_confidence	9	9	28	1.302088	4.056021	chr2	127084080	127084233	DNA|hAT-Charlie|MER5A1	+	chr2	127048022	127084550	BIN1|NM_001320642.1	-	127048022,127050420,127050801,127051153,127052254,127053421,127053904,127057472,127059010,127062114,127063570,127063932,127068162,127068923,127069994,127070552,127070761,127076625,127083588	127048633,127050522,127050912,127051243,127052362,127053445,127054012,127057601,127059155,127062197,127063646,127064018,127068255,127069031,127070090,127070647,127070816,127076706,127084550	0.857143
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	110936582	110936585	110936584	+	High_confidence	179	278	336	15.625059	5.108354	chr12	110936431	110936780	LTR|ERVL-MaLR|THE1D	+	chr12	110936601	110937451	LINC01405|ENST00000331096.2	+	110936601,110937184	110936698,110937451	0.940476
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr20	18794063	18794078	18794077	+	High_confidence	19	19	37	1.720617	4.885129	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	50668402	50668407	50668402	-	RAMPAGE_only	5	6	12	0.558038	3.022055	chr16	50668230	50668595	DNA|hAT-Charlie|MER113	+	chr16	50666557	50681302	SNX20|ENST00000568993.5	-	50666557,50667908,50675769,50677396,50681189	50666916,50669148,50675921,50677535,50681302	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	31587190	31587259	31587201	+	High_confidence	12	12	68	3.162214	4.703066	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	67387043	67387061	67387060	-	RAMPAGE_only	4	4	14	0.651044	2.873141	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.642857
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	120125627	120125643	120125636	+	High_confidence	10	10	26	1.209082	3.580462	chr8	120125674	120125869	DNA|hAT-Tip100?|MamRep1879	+	chr8	120125143	120277865	COL14A1|ENST00000432943.6	+	120125143,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120277484	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120277865	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	134432378	134432436	134432435	-	High_confidence	15	15	42	1.953132	3.953921	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.904762
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	127329745	127329761	127329745	-	RAMPAGE_only	14	14	26	1.209082	4.418296	chr3	127329590	127333426	LINE|L1|L1MA8	+	chr3	127322306	127390670	LOC101927123|NR_110147.1	-	127322306,127324534,127355889,127356250,127390445	127322727,127324731,127355940,127356283,127390670	0.923077
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	30499550	30499558	30499550	-	High_confidence	5	5	12	0.558038	2.913977	chr16	30499510	30499629	SINE|MIR|MIR1_Amn	+	chr16	30498765	30499554	AC116348.2|ENST00000563751.1	-	30498765,30499363	30499151,30499554	0.833333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	31390766	31390790	31390766	-	High_confidence	26	32	112	5.208353	6.026637	chr19	31390520	31390957	LTR|ERVL-MaLR|MLT1C	-	chr19	31384070	31390813	MSTRG.12919.1	-	31384070,31389708,31390683	31387996,31389866,31390813	0.687500
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	23524306	23524337	23524306	-	High_confidence	2	2	12	0.558038	3.022055	chr2	23524079	23524260	SINE|MIR|MIRc	-	chr2	23507042	23524344	AC011239.1|ENST00000430988.1	-	23507042,23523950	23507232,23524344	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	107529406	107529410	107529409	+	High_confidence	6	8	10	0.465032	2.646439	chr2	107529145	107529729	LTR|ERV1|LTR9	-	chr2	107529486	107556326	LINC01886|ENST00000443205.1	+	107529486,107531647,107555132	107529699,107531779,107556326	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	55982751	55982793	55982777	-	High_confidence	2	2	9	0.418528	2.500000	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.888889
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	4208298	4208320	4208298	-	RAMPAGE_only	2	2	9	0.418528	2.500000	chr16	4208240	4208368	SINE|MIR|MIRc	-	chr16	4189373	4242075	SRL|ENST00000572111.1	-	4189373,4195552,4197798,4203165,4204532,4206726,4242006	4192964,4195786,4197915,4203261,4204634,4208104,4242075	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr13	60442023	60442061	60442023	+	RAMPAGE_only	7	7	19	0.883560	4.247928	chr13	60441716	60442080	LTR|ERVL|MER68B	-	chr13	60434046	60573870	TDRD3|ENST00000621840.4	+	60434046,60439687,60444682,60460379,60467237,60483774,60485801,60494434,60509762,60510629,60528366,60535107,60567524,60573612	60434085,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573870	0.736842
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	20731064	20731116	20731064	+	RAMPAGE_only	6	6	30	1.395095	4.323231	chr6	20730868	20731527	LINE|L2|L2a	-	chr6	20546340	21232404	CDKAL1|ENST00000378610.1	+	20546340,20548592,20649292,20739518,20758594,20781144,20846074,20955418,21000226,21065047,21108400,21198020,21201109,21230847	20546523,20548705,20649377,20739615,20758643,20781265,20846178,20955585,21000372,21065228,21108463,21198104,21201274,21232404	0.833333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	69237171	69237183	69237182	-	RAMPAGE_only	8	8	21	0.976566	4.201841	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69169989	69386073	FRMD4B|ENST00000398540.7	-	69169989,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69195230,69196254,69196899,69198697,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69385827	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195141,69195364,69196396,69197038,69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69386073	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	127876019	127876020	127876019	-	RAMPAGE_only	8	8	12	0.558038	2.913977	chr9	127875960	127876265	LINE|L2|L2c	+	chr9	127867998	127875007	AK1|ENST00000373156.5	-	127867998,127868320,127871822,127872689,127873025,127874610,127874876	127868076,127868512,127871939,127872853,127873061,127874649,127875007	0.750000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	79631273	79631329	79631302	+	High_confidence	30	30	80	3.720252	5.370191	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.975000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	6737334	6737384	6737334	+	High_confidence	10	11	85	3.952768	5.300699	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.858824
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr13	24580610	24580623	24580610	+	High_confidence	5	5	13	0.604541	3.084963	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.923077
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	80059915	80059933	80059918	+	High_confidence	22	26	73	3.394730	5.001328	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.972603
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	28538672	28538696	28538690	-	High_confidence	3	3	11	0.511535	2.646439	chr16	28538407	28538698	SINE|Alu|AluJo	+	chr16	28537506	28538951	NUPR1|ENST00000567646.1	-	28537506,28538005,28538525,28538795	28537669,28538155,28538654,28538951	0.636364
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	39387780	39387801	39387780	+	High_confidence	5	5	12	0.558038	3.022055	chr3	39387553	39387832	LINE|L2|L2	-	chr3	39387807	39391510	SLC25A38|ENST00000642978.1	+	39387807,39389361,39389494,39390422,39391440	39387865,39389389,39389616,39390507,39391510	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	156674739	156674740	156674739	-	RAMPAGE_only	9	9	13	0.604541	3.238901	chr1	156674719	156674805	SINE|MIR|MIR3	-	chr1	156668762	156677397	NES|ENST00000368223.3	-	156668762,156673453,156675215,156676481	156673205,156673527,156675340,156677397	0.692308
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	105950831	105950897	105950896	+	RAMPAGE_only	24	24	173	8.045045	6.052856	chr4	105950798	105950921	SINE|Alu|AluSx	-	chr4	105895492	105969316	NPNT|ENST00000506666.5	+	105895492,105897900,105927335,105932613,105937008,105938300,105940074,105940513,105942306,105959027,105967187,105968894	105895723,105898001,105927428,105932703,105937128,105938420,105940209,105940636,105942702,105959126,105967444,105969316	0.566474
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr22	38567931	38567971	38567956	-	High_confidence	8	8	32	1.488101	4.538910	chr22	38567953	38568045	DNA|hAT|MamRep38	-	chr22	38518948	38568409	DMC1|ENST00000428462.6	-	38518948,38521607,38537591,38538294,38538538,38552665,38555356,38562286,38566589,38567582,38568205	38520089,38521724,38537652,38538409,38538612,38552707,38555409,38562369,38566736,38567627,38568409	0.843750
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	32446977	32447003	32446977	+	High_confidence	32	34	86	3.999271	5.278418	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.953488
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	100935450	100935567	100935514	+	RAMPAGE_only	4	4	33	1.534604	4.089552	chr14	100934354	100935764	LINE|L1|L1M2	-	chr14	100907042	100967040	MSTRG.8024.69	+	100907042,100910232,100913431,100935771,100938879,100940364,100942761,100944808,100947033,100948977,100949514,100950401,100951431,100953963,100954921,100955884,100958261,100959801,100961026,100963964,100964352,100966644	100907132,100910304,100913521,100937488,100938956,100940450,100942838,100944872,100947116,100949039,100949596,100950472,100951494,100954046,100955006,100955949,100958343,100960219,100961132,100964000,100964439,100967040	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	6208681	6208682	6208681	-	High_confidence	66	66	66	3.069208	3.631162	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.969697
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chrX	5726324	5726325	5726324	-	High_confidence	79	85	90	4.185284	5.284428	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.555556
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	107723765	107723767	107723766	-	RAMPAGE_only	7	10	13	0.604541	2.855389	chr11	107723329	107723836	DNA|TcMar-Tigger|Tigger2a	-	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.923077
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	47743718	47743747	47743746	+	High_confidence	2	2	7	0.325522	2.807355	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.714286
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	122064308	122064337	122064308	+	RAMPAGE_only	3	3	18	0.837057	3.836592	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	67387423	67387465	67387433	-	RAMPAGE_only	7	7	28	1.302088	4.280395	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.535714
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	143281669	143281687	143281669	-	High_confidence	42	42	132	6.138416	5.133244	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280165	143281660	MINCR|ENST00000517411.1	-	143280165,143280881,143281481	143280515,143280997,143281660	0.560606
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	34233920	34233921	34233920	+	RAMPAGE_only	7	7	7	0.325522	2.521641	chr9	34233518	34234003	LINE|L2|L2a	-	chr9	34220438	34252522	UBAP1|ENST00000359544.2	+	34220438,34220907,34234215,34241184,34249778,34250657,34251391	34220467,34220948,34234340,34242108,34249961,34250759,34252522	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	100934728	100934867	100934762	+	RAMPAGE_only	12	12	71	3.301724	3.703927	chr14	100934354	100935764	LINE|L1|L1M2	-	chr14	100931871	100998541	MSTRG.8024.76	+	100931871,100937402,100938879,100940364,100942761,100944808,100947033,100948977,100949514,100950401,100951431,100953963,100954921,100955884,100958261,100960060,100961026,100963964,100964352,100966644,100967638,100968647,100969458,100972261,100974125,100975410,100980576,100982503,100983460,100984347,100985654,100986618,100987543,100988708,100989693,100991490,100993834,100996885,100997486	100935881,100937488,100938956,100940450,100942838,100944872,100947116,100949039,100949596,100950472,100951494,100954046,100955006,100955949,100958343,100960219,100961132,100964000,100964439,100966731,100967786,100968724,100969545,100972346,100974203,100975496,100980663,100982585,100983542,100984434,100985740,100986706,100987630,100988790,100989780,100991565,100993907,100996916,100998541	0.985915
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr22	39021127	39021156	39021155	+	High_confidence	6	6	25	1.162579	3.605389	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.960000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	179273212	179273213	179273212	+	RAMPAGE_only	7	7	10	0.465032	2.921928	chr1	179273172	179273276	LINE|L2|L2c	-	chr1	179293713	179358680	SOAT1|NR_045530.1	+	179293713,179335505,179337836,179339437,179341027,179342009,179342861,179343589,179344946,179347599,179348843,179350295,179351316,179353584	179293936,179335657,179337896,179339545,179341310,179342192,179342943,179343635,179345076,179347697,179348942,179350431,179351462,179358680	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	9140393	9140428	9140393	+	High_confidence	28	28	103	4.789825	5.609378	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.601942
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	44914391	44914425	44914424	+	High_confidence	3	3	10	0.465032	2.921928	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	11795569	11795579	11795578	+	High_confidence	33	33	49	2.278654	4.412270	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.918367
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	102431237	102431271	102431237	-	High_confidence	11	11	27	1.255585	3.791925	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.925926
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr20	45833251	45833252	45833251	-	High_confidence	277	277	292	13.578920	4.955454	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.948630
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	232816723	232816752	232816751	+	RAMPAGE_only	2	2	6	0.279019	2.584963	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.833333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	40772059	40772060	40772059	+	RAMPAGE_only	19	19	19	0.883560	2.755058	chr19	40771932	40772225	SINE|Alu|AluJo	-	chr19	40775176	40777493	MIA|NM_001202553.1	+	40775176,40775536,40775751,40776968,40777396	40775211,40775669,40775885,40777079,40777493	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	73645916	73645990	73645948	-	RAMPAGE_only	6	6	40	1.860126	4.327567	chr10	73645821	73646123	SINE|Alu|AluY	-	chr10	73644880	73651029	SYNPO2L|ENST00000372873.8	-	73644880,73650907	73648879,73651029	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	33554843	33554904	33554903	+	RAMPAGE_only	53	53	299	13.904442	6.406503	chr7	33553757	33554962	LINE|L2|L2a	-	chr7	33344606	33605626	BBS9|ENST00000434373.3	+	33344606,33349067,33351218,33352858,33357854,33367766,33383665,33387991,33505462,33533953,33604864	33344634,33349170,33351323,33352873,33357995,33367862,33383838,33388144,33505645,33534176,33605626	0.919732
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	32601284	32601290	32601284	+	RAMPAGE_only	2	2	7	0.325522	2.584963	chr12	32601190	32601318	SINE|MIR|MIRb	-	chr12	32582378	32644751	FGD4|ENST00000494977.1	+	32582378,32598496,32600409,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624658,32624975,32625653,32633548,32637649,32638654,32640275,32642760,32644593	32582467,32598586,32600509,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32624751,32625068,32625779,32633689,32637855,32638795,32640453,32642842,32644751	0.857143
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	60949435	60949446	60949445	-	RAMPAGE_only	6	11	21	0.976566	3.984184	chr1	60949259	60949438	SINE|MIR|MIRb	-	chr1	60940238	60970776	NFIA-AS2|ENST00000438559.5	-	60940238,60941179,60952510,60954321,60954484,60963565,60970547	60940631,60941252,60952684,60954370,60954602,60963804,60970776	0.571429
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	180830987	180831055	180831009	+	High_confidence	5	5	24	1.116076	4.501629	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr22	35610895	35610913	35610895	-	RAMPAGE_only	3	3	12	0.558038	3.418296	chr22	35610689	35610881	SINE|MIR|MIRc	-	chr22	35606763	35615713	MB|ENST00000401702.5	-	35606763,35610883,35615573	35607443,35611106,35615713	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	98092595	98092625	98092614	+	RAMPAGE_only	41	42	149	6.928970	5.393099	chr6	98092422	98092646	LTR|ERVL|LTR16B2	-	chr6	97938788	98398771	AL589740.1|ENST00000607032.1	+	97938788,97969405,98076066,98099185,98275163,98292563,98294186,98398470	97938973,97969466,98076145,98099270,98275267,98292680,98294310,98398771	0.785235
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	104937025	104937026	104937025	+	High_confidence	18	21	22	1.023069	3.916127	chr6	104936824	104937119	SINE|Alu|AluJb	-	chr6	104936615	105078602	LIN28B|ENST00000635857.1	+	104936615,104936849,104950460,104958098,105026297,105078413	104936649,104937116,104950509,104958286,105026482,105078602	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	203533429	203533456	203533429	-	High_confidence	5	5	12	0.558038	3.277613	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	31587009	31587021	31587009	+	High_confidence	36	51	92	4.278290	5.045788	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.978261
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	110170226	110170276	110170226	-	RAMPAGE_only	17	18	48	2.232151	4.882045	chr2	110170223	110170264	SINE|MIR|MIRc	+	chr2	110123707	110204972	NPHP1|ENST00000355301.8	-	110123707,110125636,110129185,110131678,110143541,110144492,110146752,110147915,110150181,110160126,110161602,110163047,110164687,110165051,110168451,110169805,110201420,110204899	110124063,110125681,110129259,110131791,110143641,110144569,110146835,110148026,110150256,110160255,110161697,110163132,110164730,110165155,110168553,110169998,110201494,110204972	0.916667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	48199418	48199435	48199418	-	RAMPAGE_only	4	4	9	0.418528	2.750000	chr17	48199174	48199607	LINE|L2|L2c	+	chr17	48180091	48185179	SKAP1|ENST00000579336.1	-	48180091,48182393,48184722	48180248,48182457,48185179	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	4221881	4221921	4221920	-	RAMPAGE_only	5	5	18	0.837057	3.461320	chr16	4221649	4222087	LTR|ERVL-MaLR|MLT1C	-	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	149230192	149230200	149230192	+	RAMPAGE_only	5	5	13	0.604541	2.855389	chr5	149230168	149230617	LINE|L2|L2c	-	chr5	149142046	149258413	ABLIM3|ENST00000508983.5	+	149142046,149183451,149198218,149200315,149207007,149210725,149216958,149230648,149233228,149237447,149239247,149239758,149242490,149244880,149246481,149247781,149249814,149250446,149251358,149252200,149252756,149258290	149142108,149183589,149198402,149200428,149207134,149210819,149217046,149230707,149233300,149237603,149239277,149239888,149242538,149245015,149246546,149247929,149249844,149250505,149251419,149252208,149252837,149258413	0.538462
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	93017592	93017693	93017667	-	High_confidence	48	48	230	10.695725	6.832233	chr8	93017253	93017736	LTR|ERVL|LTR79	-	chr8	92885319	93017673	TRIQK|ENST00000520686.5	-	92885319,92891988,92916928,92954405,93017608	92886735,92892074,92917010,92954564,93017673	0.634783
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	602101	602107	602106	-	RAMPAGE_only	5	6	9	0.418528	2.750000	chr17	602038	602389	LINE|L2|L2c	+	chr17	518952	676407	VPS53|ENST00000576149.5	-	518952,519825,521600,532841,537027,551871,553379,560425,562502,586269,599944,601794,623532,627173,628087,631549,676179	519298,519930,521738,532911,537176,551950,553462,560573,562745,586364,600094,601896,623674,627316,628231,631628,676407	0.888889
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	201427175	201427176	201427175	-	RAMPAGE_only	203	203	203	9.440140	5.384222	chr1	201427119	201427295	SINE|MIR|MIR	-	chr1	201408863	201429866	TNNI1|ENST00000336092.8	-	201408863,201410325,201411356,201413031,201414517,201415212,201417115,201417782,201421672,201427174,201428837,201429698	201409250,201410435,201411533,201413121,201414649,201415254,201417119,201417812,201421726,201427293,201429274,201429866	0.995074
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	180830750	180830758	180830757	+	High_confidence	5	5	10	0.465032	2.503258	chr5	180830726	180830835	LTR|ERV1|MER67A	-	chr5	180830956	180835726	LINC00847|NR_045679.1	+	180830956,180832672,180834311	180831229,180832860,180835726	0.900000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	21075853	21075856	21075855	+	High_confidence	12	20	25	1.162579	2.700826	chr17	21075733	21075870	LINE|L2|L2a	-	chr17	21075555	21090615	LINC01563|ENST00000456235.1	+	21075555,21090267	21075957,21090615	0.800000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	54889136	54889148	54889136	+	RAMPAGE_only	3	3	7	0.325522	2.521641	chr3	54888995	54889708	LINE|L2|L2b	-	chr3	54123460	55074557	CACNA2D3|ENST00000471363.5	+	54123460,54320441,54386714,54503491,54562799,54569794,54569953,54581802,54627786,54642127,54752598,54764217,54837158,54838567,54846392,54871538,54879017,54880795,54885280,54885488,54887958,54891354,54896748,54899787,54968449,54969799,54984607,54987682,55004762,55007789,55009387,55018205,55073444,55073776,55074113	54123594,54320558,54386774,54503654,54562931,54569855,54570104,54581877,54627876,54642241,54752677,54764351,54837230,54838648,54846467,54871622,54879089,54880863,54885326,54885586,54888052,54891450,54896870,54899868,54968511,54969844,54984670,54987753,55004838,55007842,55009443,55018317,55073557,55073859,55074557	0.571429
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	28236226	28236240	28236226	+	High_confidence	3	4	9	0.418528	2.725481	chr1	28236202	28236266	LTR|ERVL|LTR16D1	-	chr1	28236153	28238098	ATP5IF1|ENST00000465645.1	+	28236153,28236360	28236270,28238098	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	31376356	31376357	31376356	-	High_confidence	77	79	79	3.673749	4.211792	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.898734
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	123060129	123060256	123060174	-	High_confidence	16	18	203	9.440140	5.430868	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.650246
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	107732867	107732877	107732867	-	RAMPAGE_only	13	13	33	1.534604	3.596684	chr11	107732820	107733121	SINE|Alu|AluSz	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	20771770	20771773	20771770	+	RAMPAGE_only	12	12	23	1.069572	3.663533	chr6	20771580	20771987	LTR|ERVL-MaLR|MSTB	+	chr6	20546340	21232404	CDKAL1|ENST00000378610.1	+	20546340,20548592,20649292,20739518,20758594,20781144,20846074,20955418,21000226,21065047,21108400,21198020,21201109,21230847	20546523,20548705,20649377,20739615,20758643,20781265,20846178,20955585,21000372,21065228,21108463,21198104,21201274,21232404	0.739130
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr16	58123961	58123990	58123980	-	RAMPAGE_only	2	2	10	0.465032	2.947703	chr16	58123908	58124061	LINE|L2|L2b	-	chr16	58115400	58129361	CFAP20|ENST00000565880.1	-	58115400,58116040,58116871,58129031	58115450,58116152,58116951,58129361	0.600000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	65642890	65642923	65642906	+	High_confidence	4	4	20	0.930063	3.684184	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	0.900000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	107719823	107719824	107719823	-	High_confidence	17	17	17	0.790554	3.410417	chr11	107719646	107719884	LTR|Gypsy?|LTR88c	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.941176
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	87040214	87040223	87040214	-	RAMPAGE_only	4	7	13	0.604541	3.392747	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86879938	87059631	KIAA1324L|ENST00000444627.5	-	86879938,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87059324	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912171,86913065,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87059631	0.538462
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	172398595	172398624	172398595	+	RAMPAGE_only	2	2	8	0.372025	2.521641	chr3	172398604	172398839	SINE|MIR|MIR1_Amn	+	chr3	172040553	172401665	FNDC3B|ENST00000336824.8	+	172040553,172112451,172133470,172226870,172247532,172251259,172285925,172295362,172298727,172307362,172310827,172328951,172330540,172333088,172334943,172337329,172341112,172343010,172344085,172346326,172347211,172352802,172362632,172378269,172380965,172397163	172040624,172112590,172133546,172226947,172247776,172251541,172285984,172295514,172298787,172307501,172310881,172329076,172330715,172333175,172335082,172337401,172341231,172343116,172344258,172346440,172347361,172353083,172362845,172378436,172381093,172401665	0.875000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	121313938	121314021	121314020	+	RAMPAGE_only	13	13	62	2.883195	4.121430	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.935484
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	39564747	39564781	39564747	+	RAMPAGE_only	2	2	11	0.511535	2.521928	chr17	39564791	39564909	LINE|CR1|L3b	+	chr17	39566914	39567559	AC009283.1|ENST00000615852.1	+	39566914	39567559	0.909091
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr20	3795750	3795789	3795788	+	High_confidence	11	13	69	3.208717	4.984356	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	12927733	12927734	12927733	+	High_confidence	11	11	16	0.744050	3.506891	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.562500
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	3473039	3473040	3473039	+	High_confidence	4	4	7	0.325522	2.521641	chr2	3472789	3473098	LTR|ERV1|MER31B	-	chr2	3472420	3479567	TRAPPC12|ENST00000469400.1	+	3472420,3477694,3478845,3479218	3472602,3477795,3478933,3479567	0.857143
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	9986898	9986916	9986904	+	High_confidence	6	6	17	0.790554	3.616875	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.647059
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	51645328	51645350	51645349	-	RAMPAGE_only	2	3	7	0.325522	2.584963	chr8	51644916	51645403	LTR|ERVL|MLT2B1	-	chr8	51319576	51809445	PXDNL|NM_144651.4	-	51319576,51320783,51339623,51345832,51371872,51374596,51408066,51411249,51413149,51423574,51426645,51447003,51449001,51453518,51457497,51472186,51474971,51483642,51499698,51556839,51592626,51654688,51809180	51320022,51320897,51339753,51345947,51372081,51374731,51409561,51411407,51413258,51423731,51426758,51447162,51449118,51453785,51457667,51472304,51475141,51483714,51499770,51556911,51592698,51654760,51809445	0.714286
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr21	38121472	38121492	38121491	+	High_confidence	15	15	33	1.534604	4.515320	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.939394
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	54310457	54310484	54310457	-	High_confidence	3	3	7	0.325522	2.521641	chr5	54310446	54310538	DNA|TcMar-Tigger|Tigger15a	+	chr5	53886444	54310415	ARL15|ENST00000510591.6	-	53886444,54113201,54154579,54171783,54310294	53886713,54113410,54154639,54171928,54310415	0.571429
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	112219334	112219335	112219334	+	RAMPAGE_only	14	15	17	0.790554	2.899397	chr5	112219140	112219503	LTR|ERVL-MaLR|THE1D	+	chr5	112228282	112257309	AC104126.1|ENST00000504004.1	+	112228282,112249597,112250614,112256862	112228352,112249632,112250773,112257309	0.941176
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr21	41180510	41180535	41180510	-	High_confidence	9	9	19	0.883560	3.321104	chr21	41180329	41182427	LTR|ERV1|MER66-int	-	chr21	41175230	41180818	PLAC4|ENST00000623119.1	-	41175230	41180818	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	31410170	31410201	31410170	+	High_confidence	3	3	15	0.697547	2.732915	chr1	31410144	31410241	SINE|MIR|MIRc	-	chr1	31410173	31434680	SERINC2|ENST00000536859.5	+	31410173,31423692,31424682,31425329,31425775,31426653,31428977,31429396,31432966,31434063	31410435,31423854,31424873,31425409,31425913,31426823,31429068,31429538,31433185,31434680	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	12800915	12800969	12800944	-	High_confidence	11	11	30	1.395095	3.552584	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	56559496	56559497	56559496	-	High_confidence	13	13	18	0.837057	3.503258	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	212233406	212233425	212233406	-	RAMPAGE_only	3	4	11	0.511535	3.027169	chr1	212233221	212233468	LINE|CR1|L3b	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	137254947	137254957	137254947	-	RAMPAGE_only	4	4	15	0.697547	3.039149	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.933333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	57560347	57560373	57560347	-	High_confidence	3	3	6	0.279019	2.584963	chr19	57560032	57560365	LTR|ERVL|MER88	+	chr19	57541835	57559863	ZNF550|NM_001277091.1	-	57541835,57544236,57546456,57552626,57556230,57559655	57543243,57544583,57547993,57552722,57556357,57559863	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	47067498	47067534	47067498	-	High_confidence	149	168	601	27.948394	6.009909	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.900166
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	91179462	91179526	91179462	-	High_confidence	314	316	1732	80.543458	7.311305	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91145735	91179355	MSTRG.6110.6	-	91145735,91151653,91153095,91157074,91164604,91178341,91179317	91146252,91151792,91153189,91158509,91164717,91178585,91179355	0.939954
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	48868595	48868631	48868613	-	High_confidence	549	620	2553	118.722545	7.786970	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.980807
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	110215713	110215735	110215713	-	RAMPAGE_only	9	9	37	1.720617	4.574054	chr2	110215591	110215840	LINE|L2|L2a	+	chr2	110211528	110222940	LINC00116|NR_027063.1	-	110211528,110212214,110214785,110215676,110216663,110217658,110219650,110222736	110211622,110212875,110214957,110215807,110216763,110217788,110219777,110222940	0.891892
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	129488837	129488891	129488856	+	High_confidence	8	8	40	1.860126	4.070426	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.975000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	119179243	119179257	119179243	+	High_confidence	4	4	13	0.604541	3.026987	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	57746128	57746129	57746128	+	High_confidence	6	6	6	0.279019	2.584963	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	5517063	5517080	5517068	+	RAMPAGE_only	10	13	33	1.534604	3.590820	chr9	5517066	5517116	SINE|Alu|AluJo	+	chr9	5510569	5571254	PDCD1LG2|ENST00000397747.4	+	5510569,5522532,5534744,5549334,5557617,5563161,5569953	5510803,5522601,5535050,5549604,5557752,5563211,5571254	0.909091
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	145480753	145480772	145480770	+	High_confidence	2	4	9	0.418528	2.750000	chr4	145480763	145480842	LINE|L2|L2a	-	chr4	145481193	145514932	SMAD1|ENST00000514778.1	+	145481193,145514437	145481314,145514932	0.555556
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	65382641	65382652	65382641	-	High_confidence	5	6	19	0.883560	3.572431	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.947368
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr21	29077437	29077501	29077486	+	High_confidence	6	6	24	1.116076	4.251629	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077470	29109791	MAP3K7CL|NM_001286623.1	+	29077470,29080551,29085812,29091500,29091667,29092438,29109039	29077713,29080708,29085917,29091576,29091761,29092581,29109791	0.625000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	89888961	89888962	89888961	+	RAMPAGE_only	8	8	12	0.558038	3.095795	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.750000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	11795969	11795987	11795986	+	High_confidence	15	15	24	1.116076	3.629220	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.791667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	133124484	133124485	133124484	-	RAMPAGE_only	13	13	16	0.744050	3.375000	chr5	133124115	133124701	LTR|ERVL|MLT2B3	-	chr5	133111054	133114475	AC113410.2|ENST00000507389.1	-	133111054,133114258	133111515,133114475	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	68858118	68858119	68858118	-	RAMPAGE_only	11	12	14	0.651044	3.026987	chr8	68857963	68858314	LTR|ERVL-MaLR|THE1A	-	chr8	68848741	68852763	AC083967.1|ENST00000522354.1	-	68848741,68849950,68852700	68849098,68850045,68852763	0.714286
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	45292684	45292728	45292685	+	High_confidence	22	37	104	4.836328	5.585334	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.875000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	47610565	47610588	47610578	-	RAMPAGE_only	7	8	20	0.930063	3.787144	chr3	47610404	47610841	LINE|CR1|L3	-	chr3	47585271	47746405	MSTRG.17202.1	-	47585271,47590660,47610065,47622206,47635189,47636021,47638724,47661293,47662333,47670657,47675474,47676628,47678197,47680436,47686048,47689386,47693240,47701277,47706408,47710682,47714414,47720665,47729024,47736033,47738028,47745907,47746324	47588306,47590837,47610327,47622341,47635344,47636136,47638780,47661455,47662592,47670717,47675588,47676782,47678311,47680508,47686170,47689424,47693300,47701402,47706530,47710808,47714490,47720735,47729094,47736126,47738110,47745993,47746405	0.950000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	8579884	8579920	8579884	-	RAMPAGE_only	3	3	14	0.651044	2.556657	chr9	8579471	8579903	LINE|L2|L2c	-	chr9	8317403	8733894	PTPRD|ENST00000486161.5	-	8317403,8319830,8331581,8338921,8340342,8341089,8341692,8375935,8376606,8389231,8404536,8436591,8449724,8454579,8460410,8465465,8470994,8484118,8485226,8504260,8507300,8517847,8521276,8523512,8524924,8526626,8527344,8528590,8633316,8636698,8733779	8317942,8319966,8331736,8339047,8340469,8341268,8341978,8376090,8376726,8389407,8404660,8436689,8449837,8454591,8460571,8465675,8471085,8484378,8485324,8504405,8507434,8518429,8521546,8523524,8525035,8526644,8527353,8528779,8633458,8636844,8733894	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	36594495	36594496	36594495	-	High_confidence	6	7	9	0.418528	3.000000	chr2	36594337	36594691	LTR|ERVL-MaLR|THE1A	-	chr2	36552257	36594566	FEZ2|ENST00000413938.5	-	36552257,36555682,36558437,36578596,36581289,36581504,36583352,36590902,36594413	36553179,36555748,36558513,36578865,36581431,36581590,36583469,36591011,36594566	0.888889
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	12522766	12522814	12522813	+	RAMPAGE_only	22	22	56	2.604176	4.503529	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.910714
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	77285030	77285037	77285036	-	RAMPAGE_only	3	3	8	0.372025	2.807355	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.750000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	160907842	160907851	160907842	+	RAMPAGE_only	3	4	7	0.325522	2.584963	chr3	160907638	160908059	LTR|ERVL|LTR33	-	chr3	160870597	161078907	PPM1L|NR_134243.1	+	160870597,160882236,160961735,161035833,161065402,161068810	160870646,160882319,160961910,161036120,161065564,161078907	0.714286
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	99426405	99426444	99426405	-	RAMPAGE_only	2	2	8	0.372025	2.500000	chr14	99426301	99426431	LINE|L2|L2b	-	chr14	99409803	99480788	SETD3|ENST00000329331.7	-	99409803,99412950,99413875,99458278,99459112,99461191,99463485,99465702,99480727	99410215,99413065,99413934,99458535,99459185,99461340,99463578,99465813,99480788	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chrX	7147267	7147288	7147287	+	High_confidence	23	23	45	2.092642	4.908194	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.888889
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	130367163	130367199	130367163	-	High_confidence	9	12	37	1.720617	4.072431	chr7	130366972	130367289	LTR|ERVL-MaLR|MLT1J2	-	chr7	130365649	130367127	LOC105375504|NR_133928.1	-	130365649,130366829	130365869,130367127	0.783784
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	101217578	101217599	101217578	-	High_confidence	7	7	24	1.116076	3.550341	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.916667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	236655019	236655070	236655024	-	RAMPAGE_only	8	10	31	1.441598	4.079376	chr1	236654956	236655180	SINE|Alu|AluJr	-	chr1	236549004	236604541	HEATR1|NM_018072.5	-	236549004,236551998,236553580,236554597,236555295,236555550,236555804,236556099,236557194,236558236,236558994,236559713,236561224,236564497,236565918,236566645,236568995,236571350,236571567,236572410,236572724,236574201,236574660,236576218,236576779,236581221,236582735,236583012,236585024,236585819,236586240,236587401,236587947,236590846,236591992,236592522,236594011,236595539,236595832,236596835,236597877,236599482,236603159,236603953,236604421	236550990,236552107,236553739,236554752,236555464,236555655,236555939,236556258,236557345,236558529,236559135,236559837,236561271,236564661,236566045,236566876,236569124,236571472,236571686,236572554,236572828,236574333,236574903,236576377,236576949,236581414,236582872,236583196,236585216,236585941,236586452,236587490,236588043,236590954,236592110,236592633,236594114,236595673,236596044,236596976,236597979,236599624,236603376,236604127,236604541	0.741935
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	151687237	151687251	151687244	-	High_confidence	18	18	62	2.883195	4.309757	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	26399421	26399448	26399421	-	High_confidence	2	2	8	0.372025	3.000000	chr7	26399411	26399720	DNA|hAT-Charlie|MER33	+	chr7	26372018	26399418	LOC105375304|NR_136272.1	-	26372018,26399340	26372568,26399418	0.750000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chrX	16712958	16712979	16712958	-	High_confidence	5	6	15	0.697547	3.906891	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16587998	16712979	CTPS2|NM_019857.4	-	16587998,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712979	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	64226142	64226172	64226158	-	High_confidence	159	168	683	31.761652	6.956548	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.935578
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr13	30863476	30863494	30863491	+	RAMPAGE_only	11	11	34	1.581107	4.413910	chr13	30863143	30863642	LTR|ERVL|MER74A	+	chr13	30882550	30883395	LINC00545|ENST00000440633.1	+	30882550,30883093	30882659,30883395	0.529412
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	8788252	8788253	8788252	+	High_confidence	39	40	40	1.860126	4.599379	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.850000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr15	70700103	70700104	70700103	-	High_confidence	4	4	7	0.325522	2.584963	chr15	70699992	70700076	SINE|MIR|MIRb	-	chr15	70671877	70699666	UACA|ENST00000560523.5	-	70671877,70676492,70677107,70678098,70679607,70682757,70684264,70687539,70687749,70690453,70691298,70695016,70699526	70672001,70676591,70677140,70678206,70679676,70682795,70684446,70687646,70687820,70690511,70691363,70695105,70699666	0.714286
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chrX	72305913	72305914	72305913	-	High_confidence	63	78	81	3.766755	4.955311	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	0.938272
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	39026135	39026207	39026135	+	High_confidence	4	4	28	1.302088	3.767376	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr21	14882004	14882005	14882004	-	High_confidence	12	12	12	0.558038	3.084963	chr21	14881808	14882178	LTR|ERVL-MaLR|MLT1A0	-	chr21	14852970	14881975	LINC02246|ENST00000418954.2	-	14852970,14857541,14881886	14853431,14857708,14881975	0.750000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	235980495	235980507	235980495	-	RAMPAGE_only	6	6	17	0.790554	2.780639	chr1	235980226	235980447	DNA|hAT-Charlie|MER58C	-	chr1	235975829	236065109	NID1|ENST00000366595.7	-	235975829,235978994,235979821,235980495,235981610,235985378,235990885,235993644,236024069,236025895,236029549,236032400,236038103,236041909,236045456,236048689,236064854	235977988,235979107,235979945,235980653,235981782,235985505,235991058,235993872,236024213,236026141,236029750,236032652,236038253,236042292,236045683,236048989,236065109	0.941176
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	218287266	218287280	218287279	-	High_confidence	34	34	83	3.859762	5.263517	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.614458
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chrX	38612577	38612626	38612597	+	High_confidence	39	39	188	8.742592	5.224608	chrX	38612500	38614189	LINE|L1|HAL1	-	chrX	38611635	38688920	MSTRG.26118.18	+	38611635,38666120,38671375,38674220,38675704,38681203,38687598,38687938	38612666,38666309,38671450,38674316,38675860,38681287,38687674,38688920	0.941489
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	13386129	13386133	13386132	+	RAMPAGE_only	45	46	74	3.441233	4.746839	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.851351
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	31053448	31053449	31053448	+	High_confidence	9	9	9	0.418528	2.725481	chr6	31053266	31053607	LTR|ERVL-MaLR|THE1A	+	chr6	31053449	31059890	HCG22|NR_003948.2	+	31053449,31054099,31055709,31059407	31053531,31054516,31056910,31059890	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	23285954	23285963	23285962	+	RAMPAGE_only	21	21	38	1.767120	4.128735	chr7	23285656	23286117	LTR|ERV1|MER51E	+	chr7	23299199	23311729	MALSU1|ENST00000466681.1	+	23299199,23300838,23307867,23309355	23299608,23301017,23307949,23311729	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	34244804	34244816	34244815	-	High_confidence	13	18	30	1.395095	4.123231	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34245184	MSTRG.19843.3	-	34175821,34179012,34182679,34218294,34244615	34175957,34179097,34182867,34218450,34245184	0.533333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	34405962	34405966	34405965	-	RAMPAGE_only	31	32	46	2.139145	4.941744	chr10	34405665	34405965	LTR|ERVL|LTR40b	-	chr10	34312263	34426731	PARD3|ENST00000544292.5	-	34312263,34317106,34331116,34336198,34337277,34341626,34347964,34359146,34360070,34374873,34377966,34382539,34384128,34399329,34401825,34426684	34312382,34317338,34331344,34336243,34337426,34341816,34348115,34359317,34360259,34375002,34378106,34382922,34384254,34399413,34401917,34426731	0.804348
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	55688336	55688344	55688336	+	RAMPAGE_only	5	8	16	0.744050	3.640224	chr17	55688144	55688497	LTR|ERVL-MaLR|THE1B	+	chr17	55750978	55777374	PCTP|ENST00000268896.9	+	55750978,55767334,55771105,55773723,55774791,55776034	55751244,55767452,55771185,55773895,55774859,55777374	0.687500
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	107542730	107542748	107542730	+	High_confidence	4	4	18	0.837057	3.947703	chr2	107542342	107542809	LTR|ERVL|MER70A	-	chr2	107542748	107555639	LINC01886|ENST00000439893.1	+	107542748,107555132	107542821,107555639	0.833333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	238486001	238486034	238486026	-	High_confidence	6	8	27	1.255585	3.946223	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480440	238486023	LINC01139|ENST00000649681.1	-	238480440	238486023	0.962963
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	100834619	100834708	100834707	+	High_confidence	14	15	73	3.394730	5.353940	chr14	100834648	100834738	LINE|L2|L2b	+	chr14	100833763	100861021	MEG3|ENST00000524035.5	+	100833763,100836166,100845457,100860690	100836075,100836300,100845533,100861021	0.986301
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	101670364	101670409	101670407	+	RAMPAGE_only	33	54	159	7.394001	5.775043	chr12	101670426	101670659	LINE|CR1|L3b	+	chr12	101666202	101685811	MYBPC1|ENST00000549608.1	+	101666202,101667731,101670320,101673426,101675291,101677234,101678101,101680342,101685581	101666797,101667899,101670409,101673622,101675431,101677394,101678238,101680529,101685811	0.981132
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	20423690	20423704	20423703	-	RAMPAGE_only	9	10	25	1.162579	3.772055	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.840000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	100906939	100906984	100906939	+	High_confidence	3	3	21	0.976566	3.880180	chr14	100906842	100907021	SINE|MIR|MIRb	-	chr14	100907042	100927413	MSTRG.8024.70	+	100907042,100916678	100916658,100927413	0.809524
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr9	98943562	98943578	98943575	+	High_confidence	40	41	99	4.603812	5.608562	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr8	21129079	21129095	21129079	-	RAMPAGE_only	4	4	12	0.558038	3.022055	chr8	21128762	21129274	LINE|L2|L2a	+	chr8	20952644	20973877	AC015468.3|ENST00000518967.1	-	20952644,20973732	20952916,20973877	0.833333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr2	3536496	3536516	3536496	-	High_confidence	3	3	11	0.511535	3.121928	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.818182
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	111413967	111413989	111413988	-	High_confidence	5	5	16	0.744050	3.030639	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	111394429	111413851	MSTRG.23470.1	-	111394429	111413851	0.750000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr19	36963905	36963927	36963926	+	RAMPAGE_only	5	5	15	0.697547	3.773557	chr19	36963686	36963982	SINE|Alu|AluSc	+	chr19	36973214	36997235	ZNF568|ENST00000433993.5	+	36973214,36974419,36991175,36991750,36996316	36973753,36974466,36991299,36991846,36997235	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	150991055	150991059	150991058	+	High_confidence	5	5	9	0.418528	2.500000	chr7	150990674	150991176	LTR|ERV1|LTR10A	-	chr7	150991055	151014599	NOS3|NM_000603.4	+	150991055,150993752,150995202,150996403,150996762,150998356,150998538,150998945,150999189,151000497,151001230,151001543,151001820,151002199,151006426,151006888,151007101,151008929,151009188,151009397,151010114,151010596,151010898,151012350,151013230,151013723,151014007	150991300,150993961,150995314,150996552,150996925,150998448,150998680,150999085,150999364,151000599,151001425,151001617,151001965,151002304,151006494,151007005,151007276,151009062,151009267,151009585,151010287,151010807,151010986,151012472,151013379,151013918,151014599	0.777778
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	107723719	107723726	107723719	-	RAMPAGE_only	5	5	14	0.651044	3.324863	chr11	107723329	107723836	DNA|TcMar-Tigger|Tigger2a	-	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	69425654	69425692	69425689	+	High_confidence	15	15	36	1.674113	3.391702	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425689	69429621	AP000439.3|ENST00000545202.1	+	69425689,69427362	69425806,69429621	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	70180289	70180342	70180341	+	High_confidence	34	34	195	9.068115	5.635979	chr12	70180098	70180628	LTR|ERVL|MLT2B2	+	chr12	70180337	70202004	AC084032.1|ENST00000552324.1	+	70180337,70199732,70201714	70180538,70199819,70202004	0.651282
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr4	2838253	2838259	2838258	+	RAMPAGE_only	5	5	14	0.651044	3.546594	chr4	2838108	2838543	LINE|L1|L1ME3B	-	chr4	2843856	2930076	ADD1|NM_176801.2	+	2843856,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763,2907742,2908514,2914883,2926013,2926641,2928170	2844024,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905108,2907844,2908604,2915040,2926112,2926675,2930076	0.928571
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr12	15001786	15001838	15001807	+	High_confidence	8	13	54	2.511170	5.231468	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.740741
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	225580288	225580291	225580288	-	High_confidence	7	7	12	0.558038	3.095795	chr1	225580153	225580581	LTR|ERVL-MaLR|MLT1F2	+	chr1	225519197	225580257	ENAH|ENST00000391874.2	-	225519197,225530553,225554905,225567248,225580166	225519565,225530638,225555083,225567414,225580257	0.833333
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	10655729	10655774	10655765	-	RAMPAGE_only	10	10	40	1.860126	3.450440	chr17	10655661	10655949	SINE|Alu|AluSg	-	chr17	10652272	10657309	MYH3|ENST00000582580.1	-	10652272,10654860,10656089,10657288	10652563,10655072,10656148,10657309	0.950000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr3	28291847	28291848	28291847	+	High_confidence	10	11	11	0.511535	2.663533	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.909091
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	22138251	22138254	22138253	-	RAMPAGE_only	5	8	9	0.418528	2.500000	chr7	22138233	22138437	DNA|hAT-Charlie|MER58A	+	chr7	22118308	22193735	RAPGEF5|ENST00000620335.4	-	22118308,22125603,22131036,22136037,22136932,22140024,22145043,22154533,22156809,22157854,22160517,22162396,22167069,22193366	22122521,22125658,22131101,22136125,22136983,22140115,22145114,22154604,22156888,22157885,22160615,22162541,22167148,22193735	0.666667
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr5	128082235	128082250	128082237	-	High_confidence	3	5	10	0.465032	2.725481	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	128024026	128082960	LINC01184|ENST00000508878.5	-	128024026,128061143,128076946,128081972,128082734	128024298,128061244,128077093,128082194,128082960	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr14	81170392	81170420	81170419	-	High_confidence	7	7	35	1.627610	4.513646	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.714286
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr7	6590246	6590272	6590271	+	High_confidence	4	5	14	0.651044	3.324863	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.928571
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chrX	48683361	48683363	48683362	+	High_confidence	21	43	43	1.999636	4.169038	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.930233
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	25820177	25820203	25820202	+	High_confidence	5	5	21	0.976566	3.431624	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.857143
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr1	6200636	6200658	6200636	-	High_confidence	5	6	11	0.511535	2.845351	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	1.000000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	26474340	26474344	26474343	+	RAMPAGE_only	7	13	25	1.162579	3.923856	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.880000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr6	2990740	2990749	2990748	-	RAMPAGE_only	3	3	8	0.372025	2.521641	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.875000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr10	71736782	71736818	71736817	+	RAMPAGE_only	7	7	21	0.976566	3.689704	chr10	71736709	71737032	LINE|L2|L2b	-	chr10	71712603	71742036	CDH23|ENST00000398792.3	+	71712603,71724044,71730468,71731986,71734239,71738497,71739643,71740821,71741693	71712813,71724105,71730604,71732375,71734341,71738647,71739772,71740950,71742036	0.571429
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr11	122556689	122556712	122556689	-	High_confidence	3	4	12	0.558038	3.251629	chr11	122556640	122557789	LTR|ERV1|LTR12D	+	chr11	122154754	122556721	MIR100HG|ENST00000533109.6	-	122154754,122180335,122292283,122293306,122539478,122553938,122556403	122155632,122180398,122292403,122293606,122539506,122554025,122556721	0.500000
skeletal_muscle_tissue_female_fetal_19_weeks_and_male_fetal_22_weeks	chr17	8310227	8310257	8310256	+	High_confidence	6	9	17	0.790554	3.625000	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.941176
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	99893444	99893445	99893444	-	High_confidence	10	12	13	0.753040	2.855389	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.923077
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	51961407	51961435	51961407	+	High_confidence	7	7	21	1.216450	3.725651	chr8	51960557	51961435	LINE|L2|L2a	-	chr8	51961457	52022974	AC064807.2|ENST00000521188.1	+	51961457,52022415	51961570,52022974	0.857143
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	238486001	238486035	238486034	-	High_confidence	14	15	41	2.374973	4.671928	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.682927
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	19487898	19487901	19487900	-	High_confidence	10	19	23	1.332302	3.166202	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.739130
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	2757871	2757899	2757871	+	High_confidence	4	4	23	1.332302	3.795089	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.956522
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	101217578	101217595	101217578	-	High_confidence	6	6	21	1.216450	3.681881	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.904762
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	117454948	117454953	117454949	+	High_confidence	28	40	69	3.996906	5.165998	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.710145
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	141333554	141333590	141333575	+	RAMPAGE_only	13	16	41	2.374973	4.247557	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141636595	141733987	IL15|NM_172175.2	+	141636595,141656185,141688821,141719377,141720468,141721058,141721923,141727939,141729846,141732737	141636748,141656307,141689035,141719476,141720566,141721177,141722008,141727984,141729984,141733987	0.585366
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	202551709	202551737	202551730	+	RAMPAGE_only	5	8	20	1.158524	3.546439	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.700000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	39810023	39810116	39810033	-	High_confidence	47	47	163	9.441967	5.615657	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.907975
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	75786606	75786627	75786626	+	RAMPAGE_only	6	6	18	1.042671	3.410417	chr17	75786575	75786885	SINE|Alu|AluSq2	+	chr17	75784854	75794198	UNK|ENST00000586527.1	+	75784854,75791759,75792312,75793442	75784984,75792019,75792478,75794198	0.666667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	4355592	4355593	4355592	-	High_confidence	51	51	51	2.954235	3.701769	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.901961
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	19647778	19647785	19647784	-	High_confidence	53	59	120	6.951141	6.002760	chrX	19647773	19647939	DNA|hAT-Charlie|MER5A	+	chrX	19588683	19647841	MSTRG.24209.6	-	19588683,19592066,19594948,19607937,19631863,19645399,19647477	19588802,19592147,19595000,19608045,19631958,19645475,19647841	0.775000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	176162936	176162985	176162936	-	RAMPAGE_only	2	2	10	0.579262	2.921928	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	5680234	5680259	5680240	-	High_confidence	9	9	44	2.548752	4.222808	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.954545
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	129052235	129052253	129052252	-	RAMPAGE_only	6	6	11	0.637188	2.521928	chr3	129051924	129052338	LTR|ERVL-MaLR|MLT1F1	+	chr3	128977012	129002690	KIAA1257|ENST00000510149.1	-	128977012,128978044,128987615,128988727,129002573	128977066,128978185,128987829,128988918,129002690	0.545455
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	34973954	34973991	34973954	+	High_confidence	5	5	21	1.216450	3.421928	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34973983	34975576	AL392046.2|ENST00000635301.1	+	34973983,34974193,34974657	34974088,34974282,34975576	0.761905
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	32927967	32927977	32927976	+	RAMPAGE_only	81	82	156	9.036484	6.178788	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.826923
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	19229258	19229279	19229272	+	RAMPAGE_only	2	2	8	0.463409	2.521641	chr12	19229265	19230910	LTR|ERV1|LTR12C	-	chr12	19236923	19361662	PLEKHA5|ENST00000536974.5	+	19236923,19253939,19255044,19257432,19260948,19265749,19269769,19274515,19283279,19287472,19320561,19322309,19322517,19336514,19343322,19345841,19346993,19348398,19353883,19358227,19359411,19361581	19237034,19254023,19255165,19257537,19261021,19265850,19269885,19274983,19283745,19287556,19320624,19322390,19322667,19336616,19343434,19345888,19347182,19348519,19354002,19358437,19359546,19361662	0.875000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	92536703	92536704	92536703	-	High_confidence	5	5	7	0.405483	2.521641	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.714286
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	134485387	134485456	134485443	-	High_confidence	12	14	80	4.634094	5.467781	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.925000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	96303166	96303280	96303166	-	RAMPAGE_only	15	15	57	3.301792	5.167279	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.947368
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	122074098	122074156	122074155	-	RAMPAGE_only	9	9	26	1.506081	3.617797	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065943	122076083	LOX|ENST00000505593.5	-	122065943,122070052,122070493,122074012,122075403,122076017	122066749,122070168,122070589,122074169,122075541,122076083	0.923077
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	134613031	134613097	134613031	-	RAMPAGE_only	15	15	62	3.591423	3.622211	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606429	134614903	SAR1B|ENST00000508363.5	-	134606429,134608371,134609570,134612690	134607066,134608503,134609674,134614903	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	13376643	13376679	13376678	-	High_confidence	4	4	12	0.695114	2.584963	chr12	13376413	13376888	LTR|ERVL|MLT2B1	-	chr12	13371088	13376711	LINC01559|ENST00000318426.6	-	13371088,13376223,13376513	13373438,13376425,13376711	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	6640645	6640680	6640679	-	RAMPAGE_only	5	5	11	0.637188	2.732159	chr12	6640667	6640916	LINE|L2|L2c	+	chr12	6638074	6638851	ACRBP|ENST00000540513.1	-	6638074,6638674	6638404,6638851	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	188400568	188400579	188400568	+	High_confidence	4	4	9	0.521336	2.500000	chr4	188400440	188400580	LTR|ERVL-MaLR|MLT1D	-	chr4	188400735	188485865	LINC01060|ENST00000512839.5	+	188400735,188436703,188476697,188477637,188485778	188400833,188436900,188476756,188477912,188485865	0.777778
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	103181328	103181329	103181328	-	RAMPAGE_only	16	17	17	0.984745	3.875000	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.588235
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	34132520	34132527	34132520	+	RAMPAGE_only	8	8	28	1.621933	3.305645	chr7	34132461	34132553	LINE|L2|L2b	+	chr7	34019854	34154486	BMPER|ENST00000647703.1	+	34019854,34046305,34051860,34055162,34062001,34078856,34085755,34143229,34153091	34019930,34046405,34051970,34055303,34062047,34079186,34086092,34143360,34154486	0.928571
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	29647276	29647320	29647276	+	High_confidence	2	4	13	0.753040	2.918296	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.923077
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	46097238	46097239	46097238	+	RAMPAGE_only	13	13	18	1.042671	3.616875	chr13	46096795	46098485	LTR|ERVL|ERV3-16A3_I-int	+	chr13	46052901	46113332	CPB2-AS1|ENST00000415033.2	+	46052901,46094852,46098397,46113183	46052965,46095002,46098781,46113332	0.833333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	9407491	9407507	9407506	-	RAMPAGE_only	41	49	96	5.560913	5.215776	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9398354	9414851	AC141557.1|ENST00000540982.1	-	9398354,9400235,9402426,9414802	9398484,9400326,9402556,9414851	0.562500
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	35445374	35445404	35445374	+	RAMPAGE_only	4	5	10	0.579262	2.921928	chr10	35445266	35445382	DNA|hAT-Charlie|MER117	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.800000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	166850102	166850125	166850124	+	RAMPAGE_only	8	8	14	0.810966	2.565448	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.928571
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	2757801	2757820	2757819	+	High_confidence	4	4	11	0.637188	2.732159	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	39809843	39809865	39809864	-	High_confidence	5	5	18	1.042671	2.939829	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.888889
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	77285007	77285031	77285030	-	RAMPAGE_only	6	6	15	0.868893	2.807355	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.800000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	121313981	121314023	121314020	+	RAMPAGE_only	10	13	66	3.823128	4.429192	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	51027559	51027668	51027667	-	High_confidence	45	45	189	10.948048	6.123356	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.703704
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	79878518	79878526	79878520	-	RAMPAGE_only	3	5	15	0.868893	2.610577	chr6	79878034	79879562	LINE|L1|L1MA2	+	chr6	79803582	79812246	LINC01621|NR_131786.1	-	79803582,79805895,79807213,79811526,79812119	79803898,79806048,79807341,79811550,79812246	0.733333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	233012768	233012771	233012770	+	High_confidence	5	8	10	0.579262	2.646439	chr2	233012609	233012781	DNA|hAT-Tip100|MER45A	+	chr2	233012891	233015884	AC106876.1|ENST00000463534.1	+	233012891,233015706	233013247,233015884	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	20658312	20658347	20658338	+	High_confidence	17	18	86	4.981651	5.204482	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.767442
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	43508424	43508470	43508424	+	RAMPAGE_only	3	3	9	0.521336	2.503258	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	18149844	18149864	18149863	+	High_confidence	5	5	16	0.926819	2.905639	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	31119005	31119017	31119005	-	High_confidence	6	6	13	0.753040	3.251629	chr12	31118893	31119042	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.923077
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	12184058	12184078	12184058	-	RAMPAGE_only	3	3	12	0.695114	3.095795	chr12	12183981	12184016	LINE|RTE-BovB|MamRTE1	-	chr12	12116028	12244304	LRP6|ENST00000538239.5	-	12116028,12120369,12121085,12124564,12125295,12126690,12130782,12131820,12135174,12138324,12147365,12148941,12150835,12158828,12159779,12162192,12164272,12165078,12179809,12181042,12183979,12186922,12203202,12244261	12119330,12120403,12121420,12124662,12125432,12126921,12130893,12132057,12135300,12138534,12147556,12149153,12151038,12159155,12159964,12162419,12164562,12165295,12179981,12181439,12184111,12187119,12203400,12244304	0.916667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	20750311	20750368	20750354	-	RAMPAGE_only	8	8	59	3.417644	4.831086	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746922	20755250	AC010329.1|ENST00000593903.1	-	20746922	20755250	0.949153
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	48868595	48868631	48868595	-	High_confidence	430	441	1879	108.843288	7.620050	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.982437
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	141646232	141646255	141646254	-	High_confidence	5	5	13	0.753040	2.855389	chr5	141646242	141646475	SINE|MIR|MIR	-	chr5	141644629	141646364	FCHSD1|ENST00000518499.1	-	141644629,141644858,141645019,141645770,141646086	141644690,141644942,141645148,141645932,141646364	0.846154
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	7905910	7905926	7905925	-	High_confidence	8	8	18	1.042671	3.454822	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	143018291	143018324	143018291	-	High_confidence	6	7	18	1.042671	3.461320	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	142981737	143018390	LY6E-DT|ENST00000517833.1	-	142981737,143018159	142982501,143018390	0.888889
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	24658737	24658766	24658765	+	RAMPAGE_only	3	3	9	0.521336	2.503258	chr2	24658814	24659273	LINE|L2|L2b	+	chr2	24584540	24770702	NCOA1|ENST00000395856.3	+	24584540,24643965,24658660,24665748,24673365,24682950,24691480,24693251,24697657,24705085,24706567,24710930,24726588,24728307,24729500,24739431,24741783,24751981,24757972,24762686,24768223	24584560,24644122,24658766,24665915,24673463,24683128,24691660,24693347,24697798,24705233,24707888,24711111,24726706,24728476,24729815,24739533,24742186,24752156,24758156,24762776,24770702	0.666667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	10166339	10166340	10166339	+	RAMPAGE_only	9	9	9	0.521336	2.947703	chr1	10166239	10166405	DNA|TcMar-Tigger|Tigger15a	+	chr1	10170955	10180016	UBE4B|ENST00000487244.5	+	10170955,10178643,10179415,10179894	10171329,10178818,10179562,10180016	0.888889
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	9065160	9065165	9065160	+	High_confidence	2	4	10	0.579262	2.725481	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.600000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	12184018	12184019	12184018	-	RAMPAGE_only	6	6	9	0.521336	2.641604	chr12	12183981	12184016	LINE|RTE-BovB|MamRTE1	-	chr12	12116028	12244304	LRP6|ENST00000538239.5	-	12116028,12120369,12121085,12124564,12125295,12126690,12130782,12131820,12135174,12138324,12147365,12148941,12150835,12158828,12159779,12162192,12164272,12165078,12179809,12181042,12183979,12186922,12203202,12244261	12119330,12120403,12121420,12124662,12125432,12126921,12130893,12132057,12135300,12138534,12147556,12149153,12151038,12159155,12159964,12162419,12164562,12165295,12179981,12181439,12184111,12187119,12203400,12244304	0.888889
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	65431680	65431780	65431779	+	RAMPAGE_only	5	5	41	2.374973	4.180365	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422803	65445540	MSTRG.4121.4	+	65422803,65423962	65423383,65445540	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	167937116	167937185	167937152	+	High_confidence	4	4	26	1.506081	3.522055	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167937152	167993330	DCAF6|ENST00000455334.5	+	167937152,167951799,167966628,167974829,167987494,167991203,167993225	167937252,167951861,167966721,167975015,167987608,167991339,167993330	0.923077
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	90997678	90997732	90997678	+	High_confidence	71	72	187	10.832195	3.763749	chr9	90997473	90998100	DNA|TcMar-Tigger|MER6A	+	chr9	90997053	91001871	AL355607.2|ENST00000563268.1	+	90997053,90997595,91000769	90997124,90997817,91001871	0.957219
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	193656743	193656759	193656743	+	RAMPAGE_only	5	5	14	0.810966	3.180833	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193662890	193668931	OPA1|ENST00000445863.1	+	193662890,193664879,193666295,193667169,193667370,193668314	193662962,193664996,193666389,193667280,193667455,193668931	0.642857
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	31587201	31587252	31587201	+	High_confidence	23	23	59	3.417644	4.482148	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	9775633	9775676	9775633	+	High_confidence	9	9	35	2.027416	4.392583	chr11	9775466	9776058	LTR|ERVL|MER21C	+	chr11	9775730	9808379	SBF2-AS1|ENST00000534671.1	+	9775730,9780375,9807847	9775765,9780575,9808379	0.800000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	143018394	143018434	143018394	-	High_confidence	17	17	85	4.923725	4.942112	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	142981737	143018390	LY6E-DT|ENST00000517833.1	-	142981737,143018159	142982501,143018390	0.517647
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	2975656	2975682	2975681	+	RAMPAGE_only	3	3	11	0.637188	2.845351	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.909091
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	104757698	104757713	104757709	-	High_confidence	3	3	10	0.579262	2.947703	chr7	104757029	104758365	LINE|L1|L1PA16	+	chr7	104738596	104757748	LHFPL3-AS1|ENST00000433514.5	-	104738596,104744049,104752714,104757608	104738984,104744180,104752803,104757748	0.900000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	160938585	160938586	160938585	-	RAMPAGE_only	7	7	7	0.405483	2.807355	chr5	160938478	160938828	LTR|ERVL|LTR18A	-	chr5	160563119	160852212	ATP10B|NM_025153.2	-	160563119,160569495,160589591,160591058,160598769,160602576,160603964,160606764,160612740,160615837,160617863,160620346,160622393,160632128,160634353,160636181,160640460,160644137,160649170,160670462,160686078,160687799,160688759,160716908,160785558,160851940	160565900,160569683,160589696,160591139,160598970,160602702,160604041,160607086,160612925,160615964,160617973,160620950,160622585,160632367,160634606,160636309,160640592,160644244,160649256,160670667,160686273,160688094,160688943,160717034,160785803,160852212	0.714286
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	15740036	15740078	15740036	-	RAMPAGE_only	7	7	27	1.564007	3.350586	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.740741
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	18706996	18707033	18706999	-	RAMPAGE_only	4	4	16	0.926819	3.327820	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18704304	18726180	IGSF22|ENST00000513874.5	-	18704304,18705816,18706913,18707803,18708206,18709386,18710326,18710654,18712081,18713851,18714276,18714499,18715431,18716727,18717930,18718614,18719715,18720063,18720185,18721534,18721909,18724127,18726073	18704538,18706146,18707213,18707996,18708295,18709683,18710455,18710828,18712384,18714148,18714418,18714624,18715716,18717000,18718093,18718728,18719893,18720103,18720285,18721671,18722041,18724269,18726180	0.562500
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	143281669	143281687	143281686	-	High_confidence	22	24	49	2.838383	4.704449	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281690	MINCR|ENST00000518073.1	-	143280827,143281481	143280997,143281690	0.530612
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	29647360	29647371	29647360	+	High_confidence	9	9	16	0.926819	3.189898	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.937500
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	129488730	129488857	129488856	+	High_confidence	18	18	143	8.283443	5.061184	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.986014
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	65430452	65430607	65430452	+	RAMPAGE_only	23	23	158	9.152336	5.091579	chr11	65430444	65430516	DNA|hAT-Charlie|Charlie4z	+	chr11	65422803	65445540	MSTRG.4121.4	+	65422803,65423962	65423383,65445540	0.993671
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	20921027	20921032	20921027	+	High_confidence	2	2	6	0.347557	2.584963	chr17	20920944	20921033	LINE|L2|L2a	+	chr17	20921044	20930046	CCDC144NL-AS1|ENST00000443508.6	+	20921044,20924358,20929430	20921169,20924833,20930046	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	33931121	33931157	33931156	+	High_confidence	4	5	24	1.390228	3.855389	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.875000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	73109471	73109478	73109471	+	RAMPAGE_only	2	2	9	0.521336	2.750000	chr14	73109511	73109779	SINE|Alu|AluY	+	chr14	73107301	73121313	RBM25|ENST00000527449.1	+	73107301,73109341,73110830,73112151,73114285,73119712	73107899,73109492,73111802,73112250,73114333,73121313	0.888889
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	3795750	3795772	3795750	+	High_confidence	10	10	33	1.911564	3.861477	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.939394
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	72305913	72305914	72305913	-	High_confidence	45	53	53	3.070087	4.083066	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144885.1	-	72301637,72302809,72305301,72305824	72302244,72302934,72305422,72305914	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	98943483	98943484	98943483	+	High_confidence	8	8	8	0.463409	2.500000	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.875000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	134527798	134527914	134527798	+	High_confidence	5	7	36	2.085342	4.030493	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527619	134537087	AKR1B10|ENST00000475559.1	+	134527619,134530642,134531907,134533003,134535616,134536708,134537050	134527977,134530810,134532024,134533081,134535663,134536772,134537087	0.861111
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	43167346	43167347	43167346	-	RAMPAGE_only	90	90	96	5.560913	4.874579	chr17	43167246	43167698	LTR|ERV1|LTR2	-	chr17	43148367	43170316	AC060780.1|ENST00000635600.1	-	43148367,43159422,43166979,43170125	43148783,43159727,43167849,43170316	0.895833
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	114624940	114625007	114625006	-	High_confidence	13	13	61	3.533497	4.268062	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.803279
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	127543805	127543810	127543809	-	RAMPAGE_only	18	24	42	2.432899	4.201693	chr9	127543678	127543822	LINE|L2|L2c	+	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.690476
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	102431228	102431250	102431237	-	High_confidence	12	12	54	3.128014	4.176029	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.907407
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	128626820	128626833	128626820	-	High_confidence	7	7	14	0.810966	3.235926	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128625973	128627266	RPN1|ENST00000490166.1	-	128625973,128626732	128626012,128627266	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	18851390	18851391	18851390	+	High_confidence	6	6	9	0.521336	2.725481	chr7	18851203	18851570	LTR|ERVL-MaLR|THE1D	+	chr7	18851399	18996343	HDAC9|ENST00000496026.1	+	18851399,18874477,18935808,18954145,18975805,18996022	18851452,18874596,18935942,18954230,18975953,18996343	0.888889
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	78743464	78743523	78743522	-	RAMPAGE_only	26	26	56	3.243866	5.115303	chr3	78743168	78743574	LINE|L2|L2a	+	chr3	78627406	78740310	MSTRG.16777.12	-	78627406,78631160,78633934,78635772,78639743,78646147,78647628,78651731,78657097,78659685,78661029,78661992,78667882,78668133,78668483,78670095,78685745,78688647,78693347,78714396,78717762,78728144	78627569,78631305,78634042,78636108,78639898,78646190,78647655,78651929,78657269,78659807,78661261,78662114,78668049,78668302,78668565,78670301,78685917,78688772,78693356,78717413,78717883,78740310	0.803571
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	143964931	143964988	143964987	-	High_confidence	7	7	15	0.868893	2.549255	chr6	143964544	143965292	LTR|Gypsy|MamGyp-int	+	chr6	143940337	143964868	PLAGL1|ENST00000367572.3	-	143940337,143960468,143964786	143942663,143960556,143964868	0.533333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	123061182	123061328	123061256	-	High_confidence	17	25	116	6.719437	5.161609	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.948276
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	171268995	171268996	171268995	+	RAMPAGE_only	9	9	12	0.695114	2.855389	chr1	171268815	171269160	LTR|ERVL-MaLR|THE1B	+	chr1	171275345	171283196	FMO1|ENST00000472893.1	+	171275345,171278728,171280785,171281977,171283143	171275508,171278871,171280985,171282065,171283196	0.916667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	188217308	188217324	188217308	+	RAMPAGE_only	4	4	9	0.521336	2.503258	chr3	188216938	188217653	LINE|L2|L2b	-	chr3	188212932	188890671	LPP|NM_005578.4	+	188212932,188225404,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188213046,188225527,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.666667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	2838258	2838268	2838258	+	RAMPAGE_only	4	4	16	0.926819	3.625000	chr4	2838108	2838543	LINE|L1|L1ME3B	-	chr4	2843856	2930076	ADD1|NM_176801.2	+	2843856,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763,2907742,2908514,2914883,2926013,2926641,2928170	2844024,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905108,2907844,2908604,2915040,2926112,2926675,2930076	0.687500
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	65431144	65431201	65431181	+	RAMPAGE_only	3	3	16	0.926819	3.202820	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422803	65445540	MSTRG.4121.4	+	65422803,65423962	65423383,65445540	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	8776425	8776429	8776425	-	High_confidence	10	10	22	1.274376	3.427333	chr11	8776369	8776474	LINE|L2|L2b	-	chr11	8730980	8776679	ST5|ENST00000533016.1	-	8730980,8750620,8776191	8731209,8750725,8776679	0.590909
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	158173024	158173025	158173024	-	High_confidence	57	57	67	3.881054	4.828868	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.835821
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	45292681	45292693	45292692	+	High_confidence	5	5	15	0.868893	2.985228	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.800000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	32403105	32403186	32403105	-	RAMPAGE_only	3	3	27	1.564007	3.926572	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	100919701	100919784	100919701	-	RAMPAGE_only	9	9	47	2.722530	4.519925	chr8	100919701	100920019	LTR|ERV1|MER34B-int	-	chr8	100918575	100950571	YWHAZ|NM_001135702.1	-	100918575,100923954,100924134,100924915,100948595,100950405	100920752,100924050,100924298,100925039,100948900,100950571	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	68906934	68906943	68906942	-	High_confidence	8	9	16	0.926819	2.656565	chr4	68905745	68907106	LTR|ERV1|HERV3-int	-	chr4	68901007	68906983	AC021146.12|ENST00000608365.1	-	68901007,68906874	68901375,68906983	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	16712879	16712959	16712879	-	High_confidence	14	16	90	5.213356	5.303389	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.944444
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	147832362	147832363	147832362	-	High_confidence	5	5	7	0.405483	2.521641	chr5	147832317	147832344	LINE|L2|L2a	-	chr5	147824567	147831786	SPINK1|ENST00000296695.9	-	147824567,147828021,147829598,147831522	147824706,147828128,147829630,147831786	0.857143
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100906104	100906140	100906104	+	High_confidence	3	3	10	0.579262	2.947703	chr14	100905713	100906123	LINE|L1|L1MC5	-	chr14	100906043	100947076	MSTRG.7464.61	+	100906043,100906935,100913431,100931913,100932305,100938879,100940364,100942761,100944808,100947033	100906163,100910304,100931545,100932105,100937488,100938956,100940450,100942838,100944925,100947076	0.800000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	41940221	41940222	41940221	-	High_confidence	18	19	23	1.332302	3.403989	chr22	41939903	41940386	LINE|L2|L2a	+	chr22	41938720	41940219	CENPM|NM_001110215.2	-	41938720,41940138	41939196,41940219	0.826087
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	35115804	35115842	35115816	+	High_confidence	6	6	22	1.274376	3.226731	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.954545
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	70394883	70394884	70394883	+	High_confidence	44	44	50	2.896309	4.849204	chr6	70394625	70395013	LTR|ERV1|MER48	+	chr6	70394886	70399417	AL365226.2|ENST00000418403.1	+	70394886,70395229,70399214	70395043,70395266,70399417	0.660000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	47369479	47369492	47369479	+	High_confidence	32	33	169	9.789524	6.178606	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369147	47387028	EPCAM|NM_002354.2	+	47369147,47373462,47373807,47375233,47377013,47378952,47379768,47385165,47386571	47369581,47373570,47374048,47375299,47377077,47379054,47379969,47385210,47387028	0.988166
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	65285131	65285134	65285131	+	RAMPAGE_only	9	9	23	1.332302	3.762267	chr14	65284944	65285417	LTR|ERVL-MaLR|MLT1C	+	chr14	65410591	65744121	FUT8|NM_178156.2	+	65410591,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65411993,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65744121	0.695652
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	32446972	32446997	32446977	+	High_confidence	18	18	45	2.606678	4.492926	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.933333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	152310846	152311000	152310989	-	RAMPAGE_only	31	32	87	5.039577	5.202528	chr1	152310954	152311017	LINE|L2|L2	-	chr1	152302174	152325203	FLG|NM_002016.1	-	152302174,152315318,152325188	152314747,152315477,152325203	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	99891976	99892057	99892056	-	RAMPAGE_only	19	20	89	5.155430	4.345169	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.988764
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	19393734	19393735	19393734	-	High_confidence	23	23	24	1.390228	3.081768	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19392212	19393468	AC130456.7|ENST00000623838.1	-	19392212	19393468	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	12927708	12927741	12927733	+	High_confidence	35	36	114	6.603584	6.332719	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.675439
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	110885070	110885092	110885091	+	High_confidence	6	6	10	0.579262	2.646439	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110885252	110898122	PDCD4|ENST00000462577.5	+	110885252,110887664,110890599,110894090,110894411,110895947,110898027	110885366,110887814,110890670,110894198,110894522,110896087,110898122	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	3104092	3104133	3104132	+	RAMPAGE_only	8	8	31	1.795712	4.348394	chr12	3103785	3104309	LINE|L2|L2a	-	chr12	3077384	3281756	TSPAN9|ENST00000649909.1	+	3077384,3083652,3278420,3278991,3280381,3281197,3281733	3077453,3083719,3278612,3279066,3280483,3281329,3281756	0.709677
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	95042538	95042540	95042538	-	RAMPAGE_only	44	56	75	4.344463	5.393763	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.733333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	43013392	43013393	43013392	-	High_confidence	10	10	13	0.753040	3.546594	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	83179178	83179179	83179178	+	RAMPAGE_only	22	22	23	1.332302	3.754442	chr15	83178896	83179386	LTR|ERVL|LTR53	+	chr15	83180801	83184796	AC103876.1|ENST00000561498.1	+	83180801,83184647	83181021,83184796	0.608696
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	74814679	74814709	74814679	+	RAMPAGE_only	9	9	18	1.042671	3.038562	chr14	74814375	74815071	LINE|L1|L1M4	-	chr14	74817237	74859435	YLPM1|ENST00000554107.2	+	74817237,74818230,74821056,74855216	74817277,74818314,74821137,74859435	0.666667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	141332616	141332617	141332616	-	High_confidence	795	795	815	47.209835	5.190296	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.960736
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	134527596	134527597	134527596	+	High_confidence	552	562	579	33.539257	6.910636	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.943005
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	7913248	7913268	7913248	-	RAMPAGE_only	15	15	29	1.679859	4.060262	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7847611	7853491	UTS2|NM_021995.2	-	7847611,7849639,7850811,7852900,7853306	7847882,7849683,7850922,7852923,7853491	0.620690
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	133124370	133124440	133124439	-	RAMPAGE_only	3	5	17	0.984745	2.984234	chr5	133124115	133124701	LTR|ERVL|MLT2B3	-	chr5	133111054	133114475	AC113410.2|ENST00000507389.1	-	133111054,133114258	133111515,133114475	0.823529
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	78620056	78620058	78620056	+	High_confidence	5	9	9	0.521336	2.641604	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.777778
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	10363964	10363974	10363973	+	High_confidence	4	4	9	0.521336	2.947703	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	92536651	92536675	92536651	-	High_confidence	4	4	9	0.521336	3.169925	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.888889
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	47998270	47998280	47998279	+	RAMPAGE_only	7	7	18	1.042671	3.281036	chr8	47995253	47998768	LTR|ERV1|HERVFH21-int	-	chr8	48008399	48064708	UBE2V2|ENST00000523111.6	+	48008399,48043032,48049852,48060681	48008470,48043181,48049978,48064708	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	33931211	33931225	33931221	+	High_confidence	4	4	14	0.810966	3.182006	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.714286
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	128428005	128428006	128428005	+	High_confidence	5	5	7	0.405483	2.584963	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.857143
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	6248470	6248471	6248470	+	RAMPAGE_only	269	271	271	15.697994	6.040627	chr9	6248331	6248575	LTR|ERVL-MaLR|MSTD	+	chr9	6241694	6257982	IL33|ENST00000456383.3	+	6241694,6250473,6251139,6253551,6254461,6255967	6241785,6250599,6251265,6253602,6254553,6257982	0.878229
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	167936976	167937014	167937013	-	High_confidence	10	10	17	0.984745	3.125000	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167918067	167937040	MPC2|ENST00000271373.8	-	167918067,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937040	0.882353
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	5726324	5726325	5726324	-	High_confidence	74	78	89	5.155430	4.727330	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.696629
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	57451564	57451576	57451568	+	RAMPAGE_only	3	3	12	0.695114	3.084963	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.916667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	9965305	9965321	9965320	+	RAMPAGE_only	6	7	10	0.579262	2.921928	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.600000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	98733160	98733180	98733160	+	High_confidence	2	2	8	0.463409	2.521641	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	147172975	147172997	147172996	+	High_confidence	7	7	16	0.926819	2.952820	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.937500
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	142474407	142474421	142474407	-	High_confidence	23	26	40	2.317047	4.953056	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.875000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	37987981	37987994	37987981	+	High_confidence	33	35	120	6.951141	5.516226	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.833333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	57746128	57746129	57746128	+	High_confidence	44	44	44	2.548752	3.870428	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	60949435	60949446	60949443	-	RAMPAGE_only	22	27	70	4.054832	4.298237	chr1	60949259	60949438	SINE|MIR|MIRb	-	chr1	60940238	60970776	NFIA-AS2|ENST00000438559.5	-	60940238,60941179,60952510,60954321,60954484,60963565,60970547	60940631,60941252,60952684,60954370,60954602,60963804,60970776	0.885714
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	55771609	55771613	55771612	+	RAMPAGE_only	8	8	13	0.753040	3.251629	chr14	55771626	55771736	LINE|L2|L2a	+	chr14	55896546	55962970	AL163952.1|ENST00000612704.1	+	55896546,55943639,55957154,55957961,55961980,55962171,55962824	55896589,55943812,55957290,55958166,55962087,55962277,55962970	0.692308
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	166850316	166850331	166850329	+	RAMPAGE_only	4	8	13	0.753040	2.688722	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.923077
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	49095312	49095320	49095319	+	RAMPAGE_only	3	5	8	0.463409	2.521641	chr17	49095096	49095557	LTR|ERVL|MLT2B2	+	chr17	49132459	49169989	B4GALNT2|NM_001159388.1	+	49132459,49141246,49142034,49152799,49156565,49159036,49160554,49164087,49166113,49168680,49169522	49132510,49141447,49142172,49152906,49156603,49159217,49160641,49164275,49166254,49168900,49169989	0.875000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	206161460	206161469	206161468	+	High_confidence	4	5	11	0.637188	3.277613	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	39026130	39026183	39026130	+	High_confidence	8	10	50	2.896309	4.069275	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	24580612	24580623	24580622	+	High_confidence	4	4	9	0.521336	2.947703	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	32637275	32637335	32637334	-	RAMPAGE_only	2	2	11	0.637188	3.277613	chr1	32637281	32637581	SINE|Alu|AluSx3	+	chr1	32621829	32634061	ZBTB8OS|ENST00000498691.5	-	32621829,32627507,32631826,32632207,32633644,32633950	32621948,32627544,32631879,32632345,32633727,32634061	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	92536601	92536602	92536601	-	High_confidence	41	43	46	2.664604	4.914866	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.891304
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	10363706	10363707	10363706	+	High_confidence	21	28	29	1.679859	3.797903	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.862069
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	116390275	116390290	116390275	+	RAMPAGE_only	4	4	17	0.984745	2.680037	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.882353
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	35432451	35432476	35432475	-	High_confidence	5	5	12	0.695114	3.095795	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.916667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	32172648	32172652	32172651	-	High_confidence	24	24	51	2.954235	4.640480	chr6	32172466	32172653	SINE|MIR|MIR	-	chr6	32168211	32173115	AGPAT1|ENST00000395496.5	-	32168211,32169965,32170164,32170424,32170936,32171296,32172937	32169448,32170038,32170260,32170600,32171070,32171505,32173115	0.980392
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	65570451	65570466	65570451	+	High_confidence	3	3	11	0.637188	2.845351	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570337	65681466	LINC01515|ENST00000433152.8	+	65570337,65571424,65572934,65585484,65585664,65615635,65680959	65570545,65571579,65573056,65585567,65585802,65615761,65681466	0.545455
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	77127872	77127873	77127872	+	High_confidence	15	15	22	1.274376	3.413088	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.636364
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	23384865	23384866	23384865	-	High_confidence	4	4	7	0.405483	2.807355	chr21	23384605	23385150	LTR|ERVL|MLT2B3	-	chr21	23361103	23384861	D21S2088E|ENST00000262354.4	-	23361103,23364037,23372326,23372947,23384687	23362239,23364193,23372448,23373084,23384861	0.714286
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	155343321	155343322	155343321	-	RAMPAGE_only	11	11	17	0.984745	2.910992	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.882353
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	22717935	22717936	22717935	-	High_confidence	6	6	9	0.521336	2.503258	chr6	22717913	22718256	DNA|hAT-Ac|OldhAT1	-	chr6	22654159	22717924	LOC105374972|NR_134613.1	-	22654159,22717720	22654704,22717924	0.666667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	39657326	39657337	39657326	+	High_confidence	9	9	23	1.332302	3.294664	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657326	39662889	B3GALT5|ENST00000380618.5	+	39657326,39659752,39660559	39657599,39659912,39662889	0.608696
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	102808314	102808350	102808314	+	RAMPAGE_only	3	3	11	0.637188	3.027169	chr8	102808194	102808324	DNA|hAT-Charlie|MER5B	-	chr8	102806821	102809971	GASAL1|ENST00000517910.1	+	102806821,102808933	102808553,102809971	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	176958311	176958325	176958324	-	RAMPAGE_only	4	5	8	0.463409	2.521641	chr5	176958284	176958506	SINE|MIR|MIRb	+	chr5	176908632	176968889	UIMC1|ENST00000503273.1	-	176908632,176911310,176919169,176943334,176951473,176955958,176958092,176968554	176908694,176911389,176919251,176943488,176951577,176956035,176958154,176968889	0.750000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	209429238	209429248	209429238	+	High_confidence	7	7	14	0.810966	3.324863	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.857143
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	39265954	39265988	39265954	+	High_confidence	4	5	14	0.810966	3.235926	chr14	39265902	39265967	LINE|RTE-BovB|MamRTE1	+	chr14	39265967	39350423	MIA2|ENST00000396165.8	+	39265967,39276933,39279336,39279448,39291018,39293270,39293999,39294924,39299863,39302128,39303477,39304290,39308448,39313339,39314738,39315682,39317943,39319208,39320927,39326863,39345903,39347712,39348742,39350097	39266527,39277065,39279358,39279537,39291096,39293381,39294071,39295029,39299986,39302249,39303524,39304381,39308587,39313441,39314799,39315718,39318011,39319291,39321056,39327022,39346026,39347771,39348977,39350423	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	132675338	132675353	132675338	-	High_confidence	2	2	7	0.405483	2.521641	chr8	132675252	132675288	SINE|MIR|MIRb	-	chr8	132570418	132675441	LRRC6|NM_001321965.1	-	132570418,132583693,132610165,132611293,132615037,132622610,132625271,132632739,132637934,132643373,132656829,132661459,132674557	132572480,132583779,132610261,132611363,132615097,132622688,132625454,132632963,132638107,132643686,132656907,132661627,132675441	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	44914307	44914322	44914321	+	High_confidence	15	16	23	1.332302	3.273349	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.956522
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	78743362	78743409	78743396	-	RAMPAGE_only	3	3	15	0.868893	3.664498	chr3	78743168	78743574	LINE|L2|L2a	+	chr3	78627406	78740310	MSTRG.16777.12	-	78627406,78631160,78633934,78635772,78639743,78646147,78647628,78651731,78657097,78659685,78661029,78661992,78667882,78668133,78668483,78670095,78685745,78688647,78693347,78714396,78717762,78728144	78627569,78631305,78634042,78636108,78639898,78646190,78647655,78651929,78657269,78659807,78661261,78662114,78668049,78668302,78668565,78670301,78685917,78688772,78693356,78717413,78717883,78740310	0.733333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	17895511	17895515	17895511	-	High_confidence	6	7	13	0.753040	2.855389	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.692308
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	55851351	55851374	55851351	+	High_confidence	22	22	121	7.009068	6.061675	chr5	55851124	55851720	DNA|TcMar-Tigger|Tigger17a	-	chr5	55851378	55922854	IL31RA|NM_001242638.1	+	55851378,55852194,55853321,55859508,55868790,55872269,55883043,55889969,55896349,55899915,55906105,55907358,55908264,55910531,55913476,55914846,55916643,55922395	55851633,55852312,55853567,55859599,55868908,55872451,55883195,55890135,55896429,55900132,55906288,55907460,55908411,55910672,55913570,55914928,55916834,55922854	0.859504
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	217842161	217842185	217842161	-	High_confidence	11	11	31	1.795712	3.509036	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.838710
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	81154213	81154222	81154213	-	High_confidence	5	7	12	0.695114	3.084963	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.833333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	51850300	51850301	51850300	+	RAMPAGE_only	6	6	6	0.347557	2.584963	chr15	51849951	51850728	LINE|L2|L2	-	chr15	51829629	51915725	TMOD3|ENST00000308580.11	+	51829629,51862810,51869216,51887588,51889055,51893814,51896418,51900154,51901891,51908775	51829836,51863010,51869373,51887711,51889145,51893945,51896526,51900298,51902036,51915725	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	82162533	82162535	82162534	-	RAMPAGE_only	3	5	8	0.463409	2.807355	chr16	82162370	82162754	LTR|ERVL|LTR33	+	chr16	82147797	82170193	MPHOSPH6|ENST00000563100.5	-	82147797,82148658,82149308,82151423,82164081,82164651,82170124	82147857,82148863,82149403,82151514,82164194,82164741,82170193	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	102235451	102235481	102235451	-	High_confidence	4	4	15	0.868893	2.753434	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.933333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	11193340	11193367	11193340	+	High_confidence	6	6	11	0.637188	2.646439	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.545455
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	63587325	63587346	63587345	+	High_confidence	67	68	185	10.716343	6.504532	chr18	63587176	63587346	DNA|hAT-Charlie|MER5B	-	chr18	63587365	63599199	SERPINB13|ENST00000344731.9	+	63587365,63588650,63589655,63592347,63592853,63594354,63595028,63596958	63587450,63588832,63589715,63592476,63592971,63594497,63595184,63599199	0.891892
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	64949103	64949125	64949103	+	RAMPAGE_only	7	7	43	2.490826	4.642085	chr7	64948006	64950297	LTR|ERVK|HERVK9-int	+	chr7	64947751	64950715	MSTRG.21509.1	+	64947751,64949115,64950203	64947857,64949409,64950715	0.767442
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	25820192	25820204	25820202	+	High_confidence	4	6	13	0.753040	2.918296	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.692308
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	69237176	69237186	69237182	-	RAMPAGE_only	14	17	45	2.606678	4.607977	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69170806	69353697	MSTRG.16744.2	-	69170806,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69195230,69198697,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69353543	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195141,69197038,69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69353697	0.866667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	81170402	81170423	81170419	-	High_confidence	15	16	45	2.606678	4.697846	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.933333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	85330237	85330287	85330237	-	RAMPAGE_only	13	13	51	2.954235	5.213661	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.549020
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	101975326	101975329	101975326	-	RAMPAGE_only	4	4	9	0.521336	2.725481	chr8	101975304	101975478	DNA|hAT-Charlie|MER5A	-	chr8	101687894	102124320	NCALD|ENST00000521599.5	-	101687894,101692790,101719251,101915808,102020236,102029009,102124236	101689406,101692896,101719648,101915858,102020289,102029096,102124320	0.555556
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	102246218	102246227	102246218	-	High_confidence	4	4	10	0.579262	2.725481	chr14	102246199	102246391	LTR|ERV1|HERVFH21-int	+	chr14	102229072	102246247	MOK|ENST00000520266.5	-	102229072,102233687,102246056	102229657,102233789,102246247	0.600000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	6044569	6044634	6044569	-	RAMPAGE_only	3	4	26	1.506081	3.413661	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6041152	6046437	EIF2AK1|ENST00000470168.1	-	6041152,6042932,6044561,6046070	6041219,6042993,6044661,6046437	0.615385
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	110440313	110440320	110440313	-	RAMPAGE_only	5	7	15	0.868893	3.182006	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.933333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	49086491	49086521	49086520	+	RAMPAGE_only	10	11	26	1.506081	3.753270	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49085494	49108605	SNRNP70|ENST00000595231.5	+	49085494,49086404,49090290,49090465,49098426,49098641,49101389,49102113,49104633,49107624,49107821	49085636,49086561,49090353,49090520,49098491,49098704,49101471,49102185,49104735,49107712,49108605	0.769231
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	55270876	55270922	55270876	-	High_confidence	2	2	11	0.637188	2.732159	chr15	55270754	55271222	LINE|L2|L2	+	chr15	55223915	55270874	RAB27A|ENST00000567380.5	-	55223915,55228608,55230400,55234781,55270164,55270755	55224012,55228712,55230486,55234956,55270284,55270874	0.727273
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	3536823	3536868	3536839	-	High_confidence	4	4	28	1.621933	3.967720	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3533223	3536869	AC108488.1|ENST00000438482.1	-	3533223,3534112,3536723	3533848,3534255,3536869	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	159428345	159428357	159428356	-	RAMPAGE_only	5	7	14	0.810966	3.546594	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.785714
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	132285525	132285552	132285551	-	High_confidence	5	5	22	1.274376	3.390805	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.818182
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	147839219	147839240	147839237	-	High_confidence	20	23	39	2.259121	4.143625	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.897436
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	2726955	2726963	2726962	+	High_confidence	21	21	46	2.664604	4.183101	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.847826
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	222737198	222737290	222737289	+	High_confidence	48	55	179	10.368786	6.138005	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.553073
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	157381682	157381708	157381682	-	High_confidence	6	7	26	1.506081	4.161978	chr3	157381425	157381750	SINE|Alu|AluSz6	+	chr3	157363691	157381673	VEPH1|ENST00000488772.1	-	157363691,157364302,157381155,157381593	157363761,157364512,157381376,157381673	0.576923
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	35570483	35570496	35570495	+	RAMPAGE_only	4	7	12	0.695114	3.418296	chr18	35570413	35570515	DNA|hAT-Charlie|MER5A	+	chr18	35627428	35710292	GALNT1|ENST00000589189.5	+	35627428,35654559,35663627,35677590,35683390,35687015,35689172,35691011,35702804,35703508,35709623	35627484,35654801,35663802,35677757,35683598,35687186,35689290,35691225,35702995,35703643,35710292	0.583333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	147173225	147173250	147173249	+	High_confidence	10	10	26	1.506081	3.863465	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.884615
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	59619894	59619923	59619894	+	High_confidence	486	573	1698	98.358650	6.345375	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.926384
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	172162520	172162542	172162523	+	RAMPAGE_only	6	6	18	1.042671	3.969816	chr1	172162565	172162649	LINE|L1|L1ME4b	+	chr1	172379017	172418466	DNM3|ENST00000485254.2	+	172379017,172387132,172388572,172418280	172379182,172387359,172388809,172418466	0.555556
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	73982163	73982169	73982163	-	High_confidence	11	11	22	1.274376	3.103702	chr2	73982060	73982404	LINE|L2|L2c	-	chr2	73957966	73981439	DGUOK-AS1|NR_104030.1	-	73957966,73981134	73958207,73981439	0.909091
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	9140393	9140428	9140427	+	High_confidence	23	23	88	5.097504	5.534673	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140428	9157710	ZNF317|ENST00000419608.2	+	9140428,9156611,9157267	9140592,9156748,9157710	0.522727
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	50131135	50131140	50131135	-	High_confidence	4	5	11	0.637188	2.921928	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.818182
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	89272843	89272891	89272859	-	High_confidence	18	19	147	8.515148	5.429949	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.979592
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	159005961	159005962	159005961	+	High_confidence	22	23	27	1.564007	4.023465	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.703704
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	35732358	35732359	35732358	-	High_confidence	57	57	70	4.054832	4.206099	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.942857
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	2205756	2205782	2205781	+	High_confidence	4	6	14	0.810966	2.931209	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.928571
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	109878998	109878999	109878998	+	RAMPAGE_only	10	11	11	0.637188	2.846439	chr12	109878962	109879076	SINE|MIR|MIRb	-	chr12	109900263	109905027	TCHP|ENST00000537218.1	+	109900263,109903026,109903936,109904736	109900426,109903214,109904147,109905027	0.545455
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	52236182	52236183	52236182	-	RAMPAGE_only	9	11	11	0.637188	3.095795	chr13	52235788	52236194	LINE|L1|L1PA16	+	chr13	52219351	52254020	TPTE2P2|ENST00000606973.5	-	52219351,52223238,52227004,52229325,52253744,52253936	52222633,52223331,52227096,52229431,52253833,52254020	0.818182
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	52056963	52057084	52057000	+	RAMPAGE_only	12	15	62	3.591423	4.685984	chr12	52056859	52057005	DNA|hAT-Tip100|MER91A	-	chr12	52053417	52059503	NR4A1|ENST00000550557.1	+	52053417,52057351,52058687	52057259,52057530,52059503	0.661290
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	48985579	48985606	48985600	-	RAMPAGE_only	3	4	12	0.695114	3.095795	chrX	48985549	48985919	LINE|L1|L1ME3	+	chrX	48976255	48983859	GRIPAP1|ENST00000619107.1	-	48976255,48978304,48981214,48981415,48981595,48982978,48983227,48983774	48976363,48978435,48981314,48981472,48981691,48983092,48983440,48983859	0.666667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	87040212	87040227	87040214	-	RAMPAGE_only	4	10	20	1.158524	3.784184	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	64990006	64990070	64990025	-	RAMPAGE_only	3	3	24	1.390228	4.001823	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.750000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	62259165	62259171	62259165	+	RAMPAGE_only	32	40	51	2.954235	5.308758	chr10	62258971	62259329	LTR|ERVL-MaLR|THE1B	+	chr10	62374156	62480289	ZNF365|NM_199450.2	+	62374156,62376180,62388395,62459740,62479875	62374458,62376936,62388576,62459797,62480289	0.509804
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	140700445	140700452	140700445	+	High_confidence	989	1161	1995	115.562725	4.888497	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.982957
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	104909868	104909919	104909887	+	RAMPAGE_only	8	10	34	1.969490	4.535849	chrX	104904301	104910378	LINE|L1|L1PA2	-	chrX	104566314	105767829	IL1RAPL2|ENST00000372582.5	+	104566314,104658894,105195474,105233817,105267387,105484312,105717366,105740545,105748959,105755176,105766963	104567051,104658995,105195748,105234004,105267541,105484387,105717496,105740691,105749103,105755347,105767829	0.764706
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	53464788	53464808	53464788	+	RAMPAGE_only	3	3	9	0.521336	2.500000	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.888889
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	71024045	71024083	71024055	+	High_confidence	11	11	58	3.359718	4.474691	chr2	71020399	71024471	LTR|ERV1|HERVE-int	+	chr2	71024074	71029931	OR7E91P|NR_002185.3	+	71024074,71024305,71028915	71024200,71024394,71029931	0.827586
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	29077477	29077488	29077486	+	High_confidence	4	7	12	0.695114	3.188722	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.833333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	7946878	7946898	7946878	+	High_confidence	10	10	30	1.737785	3.244414	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.833333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	143039255	143039267	143039260	+	High_confidence	5	5	14	0.810966	2.968919	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.928571
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	101998957	101999015	101998957	+	High_confidence	4	5	18	1.042671	3.794653	chr2	101998446	101999045	LTR|ERVL-MaLR|MLT1H1	-	chr2	101998961	102028423	IL1R2|NR_048564.1	+	101998961,102008514,102009561,102015870,102019637,102022186,102024532,102026110,102028225	101999116,102008642,102009826,102016051,102019812,102022249,102024668,102026253,102028423	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	160648336	160648347	160648343	-	RAMPAGE_only	5	6	15	0.868893	3.006239	chr2	160648118	160650080	LTR|ERV1|MER52D	+	chr2	160272150	160493807	RBMS1|NM_016836.3	-	160272150,160275629,160277302,160278547,160281313,160284774,160284994,160286968,160300650,160303329,160313155,160318168,160367215,160493288	160274764,160275714,160277383,160278658,160281364,160284868,160285044,160287084,160300730,160303487,160313247,160318227,160367391,160493807	0.666667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	48683362	48683363	48683362	+	High_confidence	23	31	31	1.795712	3.421623	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	39382098	39382146	39382129	+	RAMPAGE_only	3	4	14	0.810966	3.182006	chr1	39382176	39382271	SINE|MIR|MIRb	+	chr1	39331137	39486987	MACF1|ENST00000289893.8	+	39331137,39337181,39340501,39340803,39346976,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39378460,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39427960,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39465094,39468614,39479797,39484600,39485537	39336653,39337331,39340717,39340953,39347210,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39378523,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39428287,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39465112,39468732,39480009,39484730,39486987	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	95516120	95516121	95516120	+	High_confidence	11	11	17	0.984745	2.875000	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.823529
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	31119083	31119102	31119101	-	High_confidence	7	9	31	1.795712	3.615061	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.935484
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	151687233	151687245	151687233	-	High_confidence	18	18	46	2.664604	4.286739	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	147382883	147382900	147382899	+	High_confidence	6	6	19	1.100597	3.155222	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.736842
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	21200825	21200844	21200825	+	High_confidence	28	29	51	2.954235	4.912526	chr6	21200835	21201081	LINE|L1|L1MC3	+	chr6	21200811	21231441	CDKAL1|ENST00000476517.1	+	21200811,21201109,21230847	21200892,21201274,21231441	0.980392
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	113105918	113105924	113105923	-	High_confidence	72	77	193	11.179752	6.004921	chr5	113105908	113106075	DNA|hAT-Charlie|MER5B	+	chr5	113022098	113105953	MSTRG.19253.1	-	113022098,113028933,113043529,113049092,113053724,113063983,113068079,113071093,113082859,113084100,113085163,113101738,113104191,113105873	113027482,113029056,113043630,113049299,113053959,113064167,113068183,113071234,113083008,113084190,113085310,113101945,113104355,113105953	0.948187
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	88378627	88378635	88378634	-	RAMPAGE_only	6	6	14	0.810966	2.873141	chr10	88378261	88378924	LTR|ERV1|MER39B	+	chr10	88284958	88583213	RNLS|ENST00000331772.8	-	88284958,88314465,88362551,88572902,88581566,88582201,88583072	88285506,88314641,88362725,88573061,88581709,88582307,88583213	0.928571
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	86453161	86453204	86453190	-	High_confidence	15	23	136	7.877960	4.947732	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453192	MAPK10|ENST00000361569.8	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86453029	86017375,86029287,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453192	0.794118
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	65394631	65394655	65394654	-	RAMPAGE_only	4	4	9	0.521336	2.725481	chr15	65394557	65394670	SINE|MIR|MIRb	-	chr15	65381486	65396429	IGDCC4|ENST00000559327.1	-	65381486,65384953,65385830,65386550,65388448,65388807,65389283,65390154,65391879,65392133,65393360,65394410,65395093,65395749	65384419,65385115,65386059,65386656,65388586,65388978,65389411,65390338,65391981,65392370,65393531,65394548,65395258,65396429	0.777778
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	24346923	24346963	24346962	+	RAMPAGE_only	8	12	37	2.143269	3.771861	chr8	24346931	24347022	LINE|L1|L1MC1	-	chr8	24294068	24354472	ADAM28|ENST00000520448.5	+	24294068,24299973,24309893,24310162,24311360,24313387,24320235,24321314,24323833,24326553,24329984,24331149,24332659,24335445,24339465,24341597,24343100,24343505,24349863,24351231,24351986,24353769,24354383	24294195,24300077,24309970,24310241,24311437,24313580,24320307,24321448,24324003,24326635,24330115,24331327,24332749,24335641,24339568,24341757,24343181,24343588,24349972,24351310,24352052,24353832,24354472	0.756757
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	124631214	124631243	124631242	+	RAMPAGE_only	6	6	10	0.579262	2.646439	chr3	124631189	124632228	LINE|L2|L2a	+	chr3	124584681	124650915	KALRN|ENST00000454902.1	+	124584681,124632419,124633848,124650807	124584906,124632703,124633953,124650915	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	113537403	113537426	113537425	-	RAMPAGE_only	3	3	12	0.695114	3.084963	chr4	113537398	113537465	DNA|hAT-Ac|OldhAT1	-	chr4	113460146	113517643	CAMK2D|ENST00000509594.1	-	113460146,113465528,113500462,113509637,113513327,113513829,113515068,113517562	113460241,113465604,113500508,113509672,113513370,113513913,113515191,113517643	0.916667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	90154188	90154217	90154188	+	High_confidence	3	3	10	0.579262	2.721928	chr7	90154032	90154206	DNA|hAT-Charlie|MER5A	+	chr7	90154374	90164827	STEAP1|ENST00000297205.6	+	90154374,90159757,90160804,90161913,90164476	90154543,90159872,90161317,90162078,90164827	0.900000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	23951347	23951360	23951347	+	High_confidence	4	4	11	0.637188	2.550341	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.636364
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	176411455	176411459	176411458	-	RAMPAGE_only	136	158	217	12.569981	5.836226	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.852535
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	75248150	75248151	75248150	-	High_confidence	16	16	18	1.042671	3.219528	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.888889
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	116648841	116648886	116648841	-	RAMPAGE_only	4	4	27	1.564007	3.852498	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	90997765	90997779	90997772	+	High_confidence	7	7	18	1.042671	3.248365	chr9	90997473	90998100	DNA|TcMar-Tigger|MER6A	+	chr9	90997053	91001871	AL355607.2|ENST00000563268.1	+	90997053,90997595,91000769	90997124,90997817,91001871	0.833333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100829421	100829472	100829444	+	High_confidence	4	5	15	0.868893	3.521641	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829349	100860987	MSTRG.7464.30	+	100829349,100836166,100845457,100860690	100831534,100836300,100845533,100860987	0.866667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	109383454	109383500	109383464	-	High_confidence	5	6	23	1.332302	4.088779	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.956522
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	40828140	40828209	40828187	+	RAMPAGE_only	6	6	33	1.911564	4.354852	chr17	40827956	40828193	LINE|L2|L2b	+	chr17	40819184	40836274	TMEM99|ENST00000622451.1	+	40819184,40833114,40834381	40819279,40833199,40836274	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	50443318	50443319	50443318	-	High_confidence	4	4	7	0.405483	2.807355	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50396191	50443248	MSTRG.18797.1	-	50396191,50399858,50402285,50403177,50405724,50410876,50411196,50428143,50442951,50443189	50399290,50399913,50402319,50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.571429
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	35432533	35432534	35432533	-	High_confidence	4	5	7	0.405483	2.521641	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	166850054	166850061	166850054	+	RAMPAGE_only	4	4	9	0.521336	2.503258	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	122164574	122164596	122164577	+	RAMPAGE_only	11	12	45	2.606678	4.008055	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122166767	122200083	MORN5|ENST00000486801.1	+	122166767,122174495,122199884	122166915,122174627,122200083	0.911111
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	29280838	29280877	29280838	-	High_confidence	4	4	11	0.637188	3.121928	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.636364
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	7246287	7246306	7246287	+	RAMPAGE_only	3	3	11	0.637188	2.646439	chrX	7246262	7246318	SINE|Alu|AluYa8	-	chrX	7252243	7354643	STS|NM_001320753.1	+	7252243,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7252341,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.818182
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	94683483	94683510	94683483	+	High_confidence	21	21	51	2.954235	4.477436	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_001128925.1	+	94683493,94687769,94688124,94694916,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94720537,94724533,94733438,94736190	0.882353
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	26567059	26567103	26567059	-	High_confidence	3	4	12	0.695114	3.084963	chr11	26566991	26567187	SINE|MIR|MIRc	-	chr11	26559032	26567094	MUC15|ENST00000436318.6	-	26559032,26563115,26565164,26567051	26561225,26563265,26565896,26567094	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	65434491	65434553	65434552	+	RAMPAGE_only	10	10	51	2.954235	4.422995	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422803	65445540	MSTRG.4121.4	+	65422803,65423962	65423383,65445540	0.941176
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	151539216	151539449	151539250	-	High_confidence	8	10	123	7.124920	5.939262	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151539473	MSTRG.17221.3	-	151433493,151442983,151444918,151453383,151457025,151458515,151460260,151539152	151438597,151443884,151449265,151453774,151457155,151458710,151461045,151539473	0.731707
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	28048446	28048447	28048446	+	High_confidence	12	13	14	0.810966	2.807355	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	70590284	70590329	70590328	+	RAMPAGE_only	8	8	26	1.506081	3.815072	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.538462
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	80147920	80147932	80147920	+	High_confidence	3	6	11	0.637188	2.845351	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80147923	80178432	PARD6G-AS1|NR_028340.1	+	80147923,80175879,80178085	80148254,80175935,80178432	0.727273
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	193656716	193656717	193656716	+	RAMPAGE_only	25	25	28	1.621933	4.208410	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193648765	193659514	OPA1|ENST00000482865.1	+	193648765,193654861,193657079,193658886,193659481	193648871,193655027,193657232,193658995,193659514	0.678571
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	152412480	152412489	152412488	-	High_confidence	6	6	13	0.753040	2.522055	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.923077
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	55618850	55618881	55618850	-	High_confidence	10	14	29	1.679859	4.004364	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	50756882	50756904	50756903	-	RAMPAGE_only	6	6	12	0.695114	2.845351	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.666667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	70194434	70194435	70194434	+	RAMPAGE_only	7	9	11	0.637188	2.921928	chr9	70194264	70194629	LTR|ERVL-MaLR|MLT1A0	+	chr9	70043580	70226970	MAMDC2|ENST00000377182.4	+	70043580,70044583,70108210,70109719,70112994,70126158,70131518,70140144,70143553,70168701,70170478,70218336,70225749,70225967	70044231,70044697,70108482,70109804,70113132,70126415,70131612,70140288,70143819,70168795,70170631,70218596,70225834,70226970	0.909091
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	113873326	113873343	113873342	-	High_confidence	5	5	14	0.810966	2.842371	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.714286
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	99937897	99937911	99937897	+	RAMPAGE_only	8	8	16	0.926819	3.030639	chr10	99937898	99938057	SINE|MIR|MIRc	+	chr10	99927208	99958998	DNMBP-AS1|NR_024130.2	+	99927208,99928159,99955673,99956481,99956788	99927299,99928240,99955832,99956591,99958998	0.750000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	90997012	90997038	90997012	+	High_confidence	11	11	35	2.027416	3.514406	chr9	90996845	90997203	LTR|ERVL-MaLR|THE1B	+	chr9	90997053	91001871	AL355607.2|ENST00000563268.1	+	90997053,90997595,91000769	90997124,90997817,91001871	0.971429
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	2727224	2727272	2727224	+	High_confidence	4	4	16	0.926819	3.024397	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.875000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	6590246	6590286	6590246	+	High_confidence	4	4	20	1.158524	3.484184	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	2867835	2867857	2867835	+	High_confidence	3	3	14	0.810966	2.950212	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	75336495	75336518	75336514	+	High_confidence	13	13	30	1.737785	3.693345	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.866667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	218287279	218287283	218287279	-	High_confidence	9	9	20	1.158524	3.203702	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.900000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	65382641	65382646	65382645	-	High_confidence	6	6	11	0.637188	2.921928	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65379452	65382645	SLC25A45|ENST00000529962.5	-	65379452,65379866,65380131,65380533,65381874,65382485	65379561,65379938,65380175,65380622,65381969,65382645	0.636364
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	80059908	80059919	80059918	+	High_confidence	84	90	189	10.948048	5.196173	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.994709
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	67166512	67166531	67166530	+	High_confidence	6	6	19	1.100597	3.266333	chr15	67166449	67166543	LINE|L2|L2b	-	chr15	67166530	67181420	SMAD3|ENST00000558428.5	+	67166530,67170553,67181240	67166853,67170604,67181420	0.789474
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	170226587	170226588	170226587	+	High_confidence	97	102	132	7.646255	5.738677	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.734848
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	7566514	7566534	7566514	-	High_confidence	19	26	71	4.112759	4.603078	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.830986
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	1655409	1655422	1655421	-	RAMPAGE_only	6	6	12	0.695114	2.855389	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	2242922	2242923	2242922	+	High_confidence	21	21	21	1.216450	3.784942	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	90413255	90413306	90413305	+	RAMPAGE_only	19	19	54	3.128014	5.333501	chr15	90413281	90413747	LTR|ERV1|MER84	-	chr15	90388246	90500854	IQGAP1|ENST00000633485.1	+	90388246,90390773,90426109,90429588,90433718,90439331,90440501,90441505,90443393,90448572,90449558,90452774,90453131,90454427,90456151,90466000,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90482701,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390873,90426266,90429666,90433795,90439399,90440615,90441684,90443478,90448736,90449643,90452938,90453292,90454552,90456315,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90482749,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500854	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	21472448	21472449	21472448	-	RAMPAGE_only	26	26	29	1.679859	4.324863	chr12	21472270	21472755	LTR|ERV1|MER66D	-	chr12	21469801	21501551	RECQL|ENST00000421138.6	-	21469801,21470968,21471427,21473550,21474840,21475467,21475675,21476910,21477802,21483375,21486478,21490198,21491518,21499554,21501169,21501412	21470346,21471098,21471647,21473642,21474979,21475585,21475824,21476992,21477969,21483574,21486585,21490378,21491716,21499615,21501215,21501551	0.965517
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	246417412	246417413	246417412	-	High_confidence	28	28	34	1.969490	3.976410	chr1	246417275	246418033	LTR|ERV1|LTR8B	-	chr1	245749339	246417412	SMYD3|NM_022743.2	-	245749339,245764040,245858495,245863798,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246417295	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246417412	0.617647
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	35449700	35449725	35449724	+	RAMPAGE_only	9	9	37	2.143269	4.193223	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.810811
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	111097312	111097352	111097351	-	High_confidence	4	4	17	0.984745	3.057476	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	120125627	120125637	120125636	+	High_confidence	15	15	24	1.390228	3.969002	chr8	120125674	120125869	DNA|hAT-Tip100?|MamRep1879	+	chr8	120125143	120277865	COL14A1|ENST00000432943.6	+	120125143,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120277484	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120277865	0.958333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	34988756	34988785	34988756	-	High_confidence	3	3	14	0.810966	3.467720	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	80369531	80369535	80369534	+	High_confidence	6	8	12	0.695114	2.918296	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.583333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	188790028	188790049	188790048	-	High_confidence	5	6	13	0.753040	3.251629	chr2	188789955	188790492	LTR|Gypsy?|LTR85a	+	chr2	188733737	188790104	DIRC1|NM_052952.2	-	188733737,188789862	188734949,188790104	0.538462
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	30349436	30349437	30349436	+	RAMPAGE_only	6	6	9	0.521336	2.500000	chr7	30349425	30349529	SINE|MIR|MIRb	-	chr7	30284306	30367692	ZNRF2|NM_147128.3	+	30284306,30323641,30355727,30362376,30366034	30285826,30323737,30355833,30362456,30367692	0.888889
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	125828159	125828184	125828183	+	RAMPAGE_only	7	7	15	0.868893	3.521641	chr6	125827884	125828197	LINE|L2|L2a	-	chr6	125815217	125855590	NCOA7|ENST00000487635.1	+	125815217,125855019	125815404,125855590	0.800000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	12800926	12800954	12800953	-	High_confidence	3	3	7	0.405483	2.521641	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	241372946	241372983	241372949	+	RAMPAGE_only	23	24	58	3.359718	4.613484	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241356296	241466030	FARP2|ENST00000373287.8	+	241356296,241373083,241403827,241404798,241407536,241411032,241413306,241417961,241431678,241434157,241434961,241436480,241441303,241456746,241462522,241463334,241463898,241465459	241356388,241373290,241403932,241404841,241407615,241411130,241413421,241418109,241431774,241434321,241435030,241436538,241441556,241456922,241462612,241463468,241463980,241466030	0.965517
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	39021125	39021151	39021146	+	High_confidence	3	3	11	0.637188	2.845351	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	1655474	1655478	1655477	-	RAMPAGE_only	5	5	12	0.695114	3.084963	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.916667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	43013460	43013548	43013464	-	High_confidence	8	10	46	2.664604	4.862507	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.956522
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	101466859	101466878	101466874	-	RAMPAGE_only	7	7	23	1.332302	3.820889	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.739130
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	19344364	19344409	19344373	-	RAMPAGE_only	4	4	20	1.158524	3.260828	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.900000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	168093055	168093059	168093055	-	High_confidence	20	20	32	1.853638	3.587599	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.781250
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100831484	100831505	100831490	+	High_confidence	2	3	8	0.463409	2.500000	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100832063	100836223	MEG3|ENST00000521812.1	+	100832063,100836166	100832641,100836223	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	15305735	15305738	15305737	+	High_confidence	3	6	8	0.463409	2.521641	chr1	15305544	15305895	LTR|ERVL-MaLR|THE1A	+	chr1	15305760	15330059	FHAD1|ENST00000375996.6	+	15305760,15308612,15313056,15316377,15317823,15324451,15327058,15328276,15329345	15305819,15308736,15313187,15316467,15317928,15324559,15327142,15328429,15330059	0.750000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	46203082	46203083	46203082	-	High_confidence	48	53	54	3.128014	4.536988	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.666667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	31587007	31587014	31587009	+	High_confidence	10	16	27	1.564007	3.334679	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.962963
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	74199385	74199423	74199404	+	High_confidence	6	6	18	1.042671	3.836592	chr8	74199086	74199513	LINE|L2|L2a	+	chr8	74199395	74208441	AC087627.1|ENST00000522339.2	+	74199395,74207358,74207720	74199532,74207493,74208441	0.888889
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	11192951	11192978	11192977	+	High_confidence	13	13	32	1.853638	3.716631	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.656250
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	50271485	50271486	50271485	+	High_confidence	21	21	26	1.506081	3.902175	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	86353515	86353546	86353515	+	RAMPAGE_only	3	3	16	0.926819	3.452820	chr8	86353492	86353782	SINE|Alu|AluSz	-	chr8	86342773	86387026	WWP1|ENST00000523863.5	+	86342773,86368938,86374029,86380725,86381504,86386835	86342930,86369031,86374120,86380864,86381629,86387026	0.750000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	23824065	23824066	23824065	-	RAMPAGE_only	75	83	96	5.560913	5.394878	chr19	23823964	23824289	LTR|ERV1|LTR4	-	chr19	23817598	23874701	AC139769.2|ENST00000599944.1	-	23817598,23823739,23827055,23874551	23819445,23823906,23827182,23874701	0.989583
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	19386333	19386401	19386333	-	High_confidence	16	16	55	3.185940	5.071913	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	51360222	51360241	51360240	+	High_confidence	7	8	16	0.926819	3.625000	chr15	51360002	51360808	LTR|ERV1|HERV17-int	+	chr15	51360253	51384414	GLDN|ENST00000559317.5	+	51360253,51377448,51383435,51383784	51360537,51377500,51383453,51384414	0.812500
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	42404759	42404776	42404759	+	High_confidence	25	25	70	4.054832	5.398096	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404778	42412317	CAPN3|NM_173090.1	+	42404778,42405925,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42405943,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412317	0.928571
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	172165645	172165646	172165645	+	RAMPAGE_only	24	24	24	1.390228	3.522055	chr1	172165409	172165862	LINE|L2|L2c	+	chr1	172379017	172418466	DNM3|ENST00000485254.2	+	172379017,172387132,172388572,172418280	172379182,172387359,172388809,172418466	0.625000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	57516582	57516634	57516614	+	RAMPAGE_only	3	3	22	1.274376	3.584184	chr15	57516656	57516717	SINE|MIR|MIR	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.909091
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	73841842	73841877	73841876	-	High_confidence	5	7	27	1.564007	3.690260	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.703704
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	179527788	179527803	179527788	-	RAMPAGE_only	6	9	28	1.621933	3.517559	chr3	179527648	179527777	LTR|ERV1|LTR37B	-	chr3	179396088	179451590	GNB4|ENST00000232564.7	-	179396088,179405189,179413411,179413714,179414884,179416492,179419398,179420888,179426143,179451345	179401319,179405406,179413613,179413781,179415047,179416556,179419505,179420927,179426242,179451590	0.535714
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	85975973	85975974	85975973	-	RAMPAGE_only	6	6	8	0.463409	2.807355	chr1	85975633	85980629	LINE|L1|L1PBa	+	chr1	85729232	86156438	COL24A1|NM_152890.5	-	85729232,85734748,85737395,85744665,85745440,85761395,85761530,85775673,85781219,85783495,85784112,85784258,85786353,85816787,85818033,85823535,85823684,85838584,85841221,85842067,85842339,85847664,85849352,85868518,85868781,85874648,85875276,85877121,85889559,85895857,85896020,85896355,85907193,85908597,85909949,85911379,85961248,85965008,85970226,85971339,85987600,86017150,86022239,86022537,86022832,86022953,86031877,86033869,86046824,86050123,86057930,86059120,86063714,86089173,86092266,86112566,86115324,86124844,86146118,86156340	85730692,85734964,85737505,85744834,85745506,85761422,85761566,85775709,85781273,85783558,85784166,85784366,85786461,85816895,85818087,85823589,85823738,85838638,85841278,85842121,85842393,85847772,85849406,85868626,85868835,85874702,85875330,85877175,85889613,85895902,85896065,85896409,85907247,85908651,85910003,85911433,85961293,85965062,85970271,85971393,85987654,86017204,86022293,86022591,86022877,86023007,86031922,86033923,86046869,86050177,86057975,86059174,86063759,86089227,86092320,86112620,86115378,86126214,86146183,86156438	0.750000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	28291847	28291848	28291847	+	High_confidence	13	15	17	0.984745	3.292770	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.764706
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	92842944	92842954	92842944	-	RAMPAGE_only	2	3	6	0.347557	2.584963	chr8	92842893	92843081	LTR|ERVL|LTR33	+	chr8	92699749	92765578	FLJ46284|ENST00000521148.5	-	92699749,92718398,92765442	92699989,92718518,92765578	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	65053820	65053854	65053853	-	RAMPAGE_only	4	4	12	0.695114	2.663533	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.833333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	107538148	107538162	107538148	-	RAMPAGE_only	3	4	9	0.521336	2.641604	chr7	107537905	107538580	LTR|ERV1|LTR9A1	+	chr7	107372594	107549259	COG5|ENST00000475638.6	-	107372594,107412501,107527236,107548110,107548277,107549210	107372760,107412632,107527357,107548180,107548332,107549259	0.777778
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	28233982	28234015	28234014	-	RAMPAGE_only	6	6	19	1.100597	3.511085	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	201115931	201115978	201115931	+	High_confidence	4	4	17	0.984745	3.375000	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.823529
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	91179462	91179526	91179462	-	High_confidence	499	513	2455	142.208767	7.467624	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.880652
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	34405962	34405966	34405962	-	RAMPAGE_only	16	23	42	2.432899	4.519393	chr10	34405665	34405965	LTR|ERVL|LTR40b	-	chr10	34312263	34426731	PARD3|ENST00000544292.5	-	34312263,34317106,34331116,34336198,34337277,34341626,34347964,34359146,34360070,34374873,34377966,34382539,34384128,34399329,34401825,34426684	34312382,34317338,34331344,34336243,34337426,34341816,34348115,34359317,34360259,34375002,34378106,34382922,34384254,34399413,34401917,34426731	0.523810
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	47067498	47067518	47067498	-	High_confidence	119	130	526	30.469170	5.748423	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.868821
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	64999443	64999444	64999443	-	RAMPAGE_only	46	50	55	3.185940	4.730915	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64990808	65006653	ERV3-1|ENST00000394323.2	-	64990808,65006540	64993414,65006653	0.672727
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	8739488	8739489	8739488	-	RAMPAGE_only	6	6	9	0.521336	2.503258	chr1	8739036	8739455	LTR|ERVL|LTR41	-	chr1	8464969	8753838	RERE|ENST00000480342.5	-	8464969,8495062,8497404,8508626,8541213,8556474,8557417,8614560,8624309,8655972,8753430	8466023,8495162,8497529,8508675,8541318,8556571,8557523,8614686,8624380,8656441,8753838	0.888889
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	29114286	29114287	29114286	+	High_confidence	9	9	9	0.521336	2.947703	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.666667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	147839194	147839196	147839195	-	High_confidence	6	10	13	0.753040	2.623517	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.923077
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	49646479	49646501	49646479	-	High_confidence	4	4	19	1.100597	3.169925	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.578947
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	65570509	65570540	65570519	+	High_confidence	24	33	143	8.283443	5.905577	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.664336
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	20423688	20423704	20423703	-	RAMPAGE_only	15	17	39	2.259121	4.109138	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.794872
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	11201309	11201353	11201309	-	RAMPAGE_only	4	4	18	1.042671	3.499228	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.944444
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	65437463	65437608	65437584	+	RAMPAGE_only	16	16	218	12.627907	5.394625	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65422803	65445540	MSTRG.4121.4	+	65422803,65423962	65423383,65445540	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chrY	4036474	4036532	4036501	+	High_confidence	9	9	47	2.722530	4.291098	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	0.787234
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	135965718	135965758	135965723	+	High_confidence	50	73	305	17.667484	6.011884	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.977049
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	40772059	40772060	40772059	+	RAMPAGE_only	44	44	44	2.548752	3.509649	chr19	40771932	40772225	SINE|Alu|AluJo	-	chr19	40775176	40777493	MIA|NM_001202553.1	+	40775176,40775536,40775751,40776968,40777396	40775211,40775669,40775885,40777079,40777493	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	133124484	133124485	133124484	-	RAMPAGE_only	669	674	767	44.429378	4.930366	chr5	133124115	133124701	LTR|ERVL|MLT2B3	-	chr5	133111054	133114475	AC113410.2|ENST00000507389.1	-	133111054,133114258	133111515,133114475	0.958279
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	50267451	50267478	50267477	+	High_confidence	7	10	27	1.564007	3.429275	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.925926
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	169182765	169182839	169182832	-	High_confidence	41	42	186	10.774269	5.311167	chr6	169182607	169182961	LTR|ERVL-MaLR|THE1A	-	chr6	169175303	169182740	LINC02544|ENST00000564830.2	-	169175303,169179275,169182683	169175671,169179394,169182740	0.827957
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	49539126	49539178	49539156	+	RAMPAGE_only	6	7	25	1.448154	3.349275	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49527617	49543638	RCN3|ENST00000270645.7	+	49527617,49528466,49534192,49537032,49539118,49542552,49543105	49528058,49528714,49534395,49537205,49539179,49542752,49543638	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	167271325	167271337	167271330	+	High_confidence	4	4	12	0.695114	3.251629	chr6	167271259	167271341	DNA|hAT-Charlie|MER5A	+	chr6	167271168	167296196	UNC93A|ENST00000503433.5	+	167271168,167291438,167294516,167296031	167271458,167291576,167294698,167296196	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	59620042	59620064	59620042	+	High_confidence	13	21	60	3.475571	4.829737	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.800000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	229232042	229232057	229232053	-	High_confidence	10	10	26	1.506081	3.772055	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.653846
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	139647326	139647358	139647357	-	RAMPAGE_only	9	10	25	1.448154	3.675311	chr4	139647213	139647611	LINE|L2|L2b	+	chr4	139618135	139623232	AC112236.1|ENST00000561977.1	-	139618135,139623100	139619101,139623232	0.600000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	46266488	46266511	46266488	-	High_confidence	4	4	16	0.926819	3.202820	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	48426900	48426949	48426900	-	High_confidence	2	2	9	0.521336	2.725481	chr13	48426772	48427168	LTR|ERVL-MaLR|MSTB	-	chr13	48411047	48426907	MSTRG.6422.7	-	48411047,48415699,48417166,48422649,48426579	48413111,48415810,48417320,48422790,48426907	0.666667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	68882873	68882880	68882879	-	High_confidence	4	4	10	0.579262	2.641604	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.900000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	155612322	155612336	155612322	+	High_confidence	4	4	12	0.695114	3.095795	chrX	155612307	155612443	SINE|MIR|MIR3	-	chrX	155612564	155782459	SPRY3|NM_001304990.1	+	155612564,155767961,155773765	155612647,155768136,155782459	0.500000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	57	57	57	3.301792	3.461812	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	53523830	53523896	53523890	-	High_confidence	9	9	37	2.143269	4.516876	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.918919
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	37849317	37849333	37849317	-	High_confidence	34	34	84	4.865799	4.785217	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.988095
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	88667567	88667676	88667634	+	RAMPAGE_only	363	373	1836	106.352463	6.100314	chr10	88667660	88667752	DNA|hAT-Ac|OldhAT1	+	chr10	88664457	88678814	LIPF|ENST00000355843.2	+	88664457,88665478,88667286,88667568,88668656,88669836,88671828,88673587,88675585,88676208,88678444	88664491,88665559,88667402,88667686,88668756,88669946,88671965,88673734,88675657,88676280,88678814	0.991830
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	8788252	8788253	8788252	+	High_confidence	62	64	70	4.054832	5.025223	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.885714
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100829523	100829610	100829523	+	High_confidence	20	22	69	3.996906	5.104405	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.971014
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	179273212	179273213	179273212	+	High_confidence	457	458	612	35.450821	6.498846	chr1	179273172	179273276	LINE|L2|L2c	-	chr1	179273119	179358677	MSTRG.1945.1	+	179273119,179302676,179323436,179335505,179337836,179339437,179341027,179342113,179342861,179343589,179344946,179347599,179348843,179350295,179351316,179353584	179273240,179302802,179323495,179335657,179337896,179339545,179341310,179342192,179342943,179343635,179345076,179347697,179348942,179350431,179351462,179358677	0.968954
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	32684271	32684272	32684271	-	RAMPAGE_only	18	18	19	1.100597	2.705229	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32638774	32659451	MYO1D|ENST00000581059.5	-	32638774,32653842,32654476,32659114,32659424	32638835,32653947,32654621,32659338,32659451	0.684211
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	102822458	102822471	102822458	-	RAMPAGE_only	6	6	19	1.100597	3.616349	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.736842
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	2205814	2205851	2205814	+	High_confidence	5	5	34	1.969490	3.667914	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	51069500	51069539	51069500	-	RAMPAGE_only	25	25	56	3.243866	4.808455	chr19	51069174	51069685	LINE|L2|L2-1_AMi	+	chr19	51059642	51065114	KLK13|ENST00000596955.1	-	51059642,51060432,51065015	51060093,51060619,51065114	0.517857
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	31121337	31121359	31121337	-	RAMPAGE_only	7	10	20	1.158524	3.684184	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	23417917	23417962	23417917	-	RAMPAGE_only	5	5	16	0.926819	3.108459	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.937500
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	9621588	9621592	9621591	+	High_confidence	8	8	14	0.810966	3.664498	chr19	9621594	9621665	SINE|Alu|FLAM_C	+	chr19	9621516	9634862	ZNF561-AS1|ENST00000587536.5	+	9621516,9626783,9632227,9633459	9621645,9626860,9632417,9634862	0.714286
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	4187108	4187109	4187108	-	High_confidence	14	14	18	1.042671	2.836592	chr17	4187012	4187196	LINE|L1|L1PB2	-	chr17	4183525	4187109	ANKFY1|ENST00000574736.1	-	4183525,4183811,4184817,4186893	4183551,4183910,4185046,4187109	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	79631242	79631329	79631302	+	High_confidence	115	115	496	28.731384	6.323822	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.961694
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	42404804	42404832	42404805	+	High_confidence	8	11	28	1.621933	3.778424	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404797	42412317	CAPN3|ENST00000561817.5	+	42404797,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42412085	42404955,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412317	0.857143
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	6208681	6208682	6208681	-	High_confidence	140	140	140	8.109665	3.729428	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.978571
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	643621	643636	643635	-	High_confidence	8	8	25	1.448154	3.459471	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	134527683	134527715	134527714	+	High_confidence	6	6	12	0.695114	2.688722	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527619	134537087	AKR1B10|ENST00000475559.1	+	134527619,134530642,134531907,134533003,134535616,134536708,134537050	134527977,134530810,134532024,134533081,134535663,134536772,134537087	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	37603230	37603231	37603230	+	RAMPAGE_only	14	14	15	0.868893	2.842371	chr9	37603152	37603302	SINE|MIR|MIR3	+	chr9	37650999	37746904	FRMPD1|ENST00000377765.7	+	37650999,37692637,37707415,37708398,37711349,37719068,37724224,37729727,37730983,37732303,37733472,37733729,37735551,37737095,37740077,37744388	37651094,37692742,37707573,37708501,37711395,37719176,37724320,37729853,37731103,37732440,37733599,37733825,37735734,37737243,37740884,37746904	0.533333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	34807244	34807279	34807244	+	RAMPAGE_only	31	32	85	4.923725	4.944444	chr5	34807136	34807608	LINE|L2|L2b	-	chr5	34687558	34830785	RAI14|ENST00000506376.1	+	34687558,34757467,34795938,34803711,34807799,34808583,34811011,34811766,34812179,34813573,34814582,34818796,34821731,34822955,34826329,34829731,34830687	34687722,34757598,34796027,34803776,34807857,34808654,34811118,34811945,34812208,34813660,34814669,34818851,34821850,34824491,34826479,34829797,34830785	0.988235
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	3263796	3263829	3263828	+	High_confidence	5	5	21	1.216450	3.296148	chr16	3263871	3263932	SINE|MIR|MIRc	+	chr16	3263767	3267567	LINC00921|NR_033904.1	+	3263767,3267125	3265768,3267567	0.857143
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	122322494	122322495	122322494	-	RAMPAGE_only	6	9	9	0.521336	2.725481	chr11	122322142	122322989	LINE|L2|L2c	+	chr11	122089195	122309451	MIR100HG|ENST00000648734.1	-	122089195,122155550,122180335,122202763,122292283,122309249	122091719,122155632,122180398,122202909,122292403,122309451	0.666667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	169654650	169654691	169654690	-	RAMPAGE_only	5	5	15	0.868893	3.324863	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169558320	169667275	WDR27|ENST00000546525.5	-	169558320,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197,169651929,169658275,169659085,169659450,169660662,169662303,169663562,169664165,169665485,169667135	169559927,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649275,169652008,169658358,169659207,169659518,169660766,169662424,169663649,169664286,169665556,169667275	0.533333
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	113117907	113117971	113117970	+	High_confidence	116	143	669	38.752613	6.524567	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.805680
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	188153195	188153210	188153195	+	High_confidence	8	8	17	0.984745	2.780639	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.882353
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	45192665	45192666	45192665	-	RAMPAGE_only	6	7	8	0.463409	2.521641	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	0.875000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	150433729	150433768	150433729	+	High_confidence	4	4	8	0.463409	2.500000	chr7	150433631	150433743	LINE|CR1|CR1_Mam	-	chr7	150433653	150448140	LINC00996|NR_034033.1	+	150433653,150442548,150446699,150447075	150433829,150443160,150446889,150448140	0.625000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	139344535	139344584	139344547	+	High_confidence	15	15	46	2.664604	3.980220	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.956522
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	98943525	98943578	98943575	+	High_confidence	11	16	46	2.664604	4.360306	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	71050189	71050221	71050189	+	RAMPAGE_only	9	9	44	2.548752	3.969684	chr2	71048568	71050605	LTR|ERV1|HERVE-int	+	chr2	71055526	71056003	OR7E62P|ENST00000456741.1	+	71055526	71056003	0.659091
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	117455061	117455066	117455061	+	High_confidence	4	4	10	0.579262	2.721928	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.600000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	115194098	115194138	115194098	-	High_confidence	4	4	11	0.637188	3.095795	chr11	115194047	115194164	DNA?|DNA?|Eulor12	+	chr11	115176329	115194110	CADM1|ENST00000543375.5	-	115176329,115178643,115193837	115176592,115178775,115194110	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	63587246	63587247	63587246	+	High_confidence	10	10	14	0.810966	3.521641	chr18	63587176	63587346	DNA|hAT-Charlie|MER5B	-	chr18	63587299	63599198	SERPINB13|ENST00000269489.9	+	63587299,63588650,63589655,63592347,63592853,63594354,63595028,63596958	63587450,63588832,63589742,63592476,63592971,63594497,63595184,63599198	0.785714
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	71745875	71745936	71745875	+	High_confidence	31	31	137	7.935886	5.586825	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.897810
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	13386132	13386133	13386132	+	RAMPAGE_only	11	12	17	0.984745	3.327820	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.882353
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	15738511	15738512	15738511	+	High_confidence	155	159	159	9.210262	4.614289	chr3	15738158	15739435	LTR|ERVK|MER11B	-	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.993711
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	108578342	108578371	108578370	+	RAMPAGE_only	2	2	7	0.405483	2.521641	chrX	108578420	108578552	LINE|L1|L1MA9	+	chrX	108582491	108627269	COL4A5|ENST00000483338.1	+	108582491,108584483,108586614,108591057,108591560,108595508,108596997,108597376,108598701,108601392,108601884,108602963,108606741,108614910,108620258,108621802,108622675,108624235,108625704,108626209	108582937,108584525,108586747,108591231,108591644,108595601,108597068,108597568,108598870,108601485,108601989,108603061,108606892,108615024,108620426,108621892,108622825,108624334,108625794,108627269	0.714286
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	75127157	75127272	75127271	-	RAMPAGE_only	15	15	115	6.661510	5.051760	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.886957
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	144853535	144853556	144853555	-	High_confidence	6	9	17	0.984745	3.454822	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	179517522	179517569	179517545	+	RAMPAGE_only	45	55	189	10.948048	6.340990	chr1	179516075	179517979	LINE|L1|L1PB1	-	chr1	179534492	179554713	AXDND1|ENST00000484455.1	+	179534492,179554511	179534962,179554713	0.650794
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	51338597	51338598	51338597	-	High_confidence	6	6	6	0.347557	2.584963	chr15	51338475	51338990	LTR|ERVL|MER21A	-	chr15	51222478	51338597	CYP19A1|ENST00000405011.6	-	51222478,51227778,51236858,51242767,51278007,51338494	51222525,51227933,51237009,51242950,51278162,51338597	0.666667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	107580245	107580267	107580245	+	High_confidence	491	492	2457	142.324619	7.157452	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.918193
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	85378112	85378113	85378112	-	High_confidence	49	49	49	2.838383	4.229520	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	55851547	55851564	55851562	+	High_confidence	4	6	14	0.810966	3.238901	chr5	55851124	55851720	DNA|TcMar-Tigger|Tigger17a	-	chr5	55851505	55922850	IL31RA|ENST00000359040.9	+	55851505,55859508,55868790,55872269,55883043,55889969,55896349,55899915,55906105,55907358,55908264,55910531,55913476,55914846,55916643,55922395	55851633,55859599,55868908,55872451,55883195,55890135,55896429,55900132,55906288,55907460,55908411,55910672,55913570,55914928,55916834,55922850	0.642857
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	34244811	34244824	34244815	-	RAMPAGE_only	14	16	29	1.679859	3.633974	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34218343	AC138409.2|ENST00000507274.1	-	34175821,34179012,34182679,34218294	34175957,34179097,34182867,34218343	0.586207
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	147937557	147937599	147937598	+	RAMPAGE_only	3	3	13	0.753040	3.085055	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147943244	147948534	FMR1|ENST00000463120.2	+	147943244,147944868,147945533,147948412	147943326,147945051,147945616,147948534	0.846154
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	4856800	4856801	4856800	-	High_confidence	10	11	12	0.695114	2.913977	chr3	4856557	4857001	LTR|ERVL-MaLR|MLT1D	-	chr3	4814293	4856755	AC018816.1|ENST00000465436.5	-	4814293,4830946,4856635	4814431,4831018,4856755	0.666667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	65642912	65642934	65642912	+	High_confidence	3	3	17	0.984745	3.337175	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	33194680	33194709	33194708	-	High_confidence	9	9	21	1.216450	3.308751	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.809524
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	18851510	18851546	18851545	-	RAMPAGE_only	8	9	29	1.679859	4.208966	chr8	18851419	18851578	SINE|tRNA-Deu|AmnSINE2	-	chr8	18527302	18808895	PSD3|NM_206909.2	-	18527302,18556208,18572527,18575127,18600363,18632612,18655641,18765448,18799294,18801269,18804521,18804703,18808754	18535958,18556352,18572672,18575285,18600434,18632806,18655685,18765538,18799353,18801382,18804602,18804898,18808895	0.551724
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	39387780	39387798	39387780	+	RAMPAGE_only	6	7	11	0.637188	2.913977	chr3	39387553	39387832	LINE|L2|L2	-	chr3	39384431	39397012	SLC25A38|ENST00000643672.1	+	39384431,39389494,39390422,39391440,39391852,39394409,39396397	39384705,39389616,39390507,39391620,39392021,39394576,39397012	0.727273
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	132285409	132285410	132285409	-	High_confidence	8	8	11	0.637188	2.521928	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.545455
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	118241603	118241619	118241614	-	RAMPAGE_only	3	3	10	0.579262	2.947703	chr11	118241373	118241624	SINE|MIR|MIR	+	chr11	118229453	118252320	MPZL3|ENST00000446386.2	-	118229453,118233459,118235423,118240210,118252221	118229920,118233523,118235589,118240377,118252320	0.700000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	23576944	23576948	23576944	-	High_confidence	17	18	33	1.911564	4.131300	chr18	23576532	23578195	LTR|ERV1|LTR12C	-	chr18	23573451	23576947	NPC1|ENST00000587223.1	-	23573451,23576480	23573574,23576947	0.878788
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	18794063	18794086	18794077	+	High_confidence	10	10	47	2.722530	4.332890	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.978723
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	55069739	55069774	55069739	-	High_confidence	5	8	25	1.448154	3.720176	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55063219	55069540	RDH13|ENST00000588306.1	-	55063219,55064295,55068758,55069367	55063371,55064342,55068828,55069540	0.520000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	48596900	48596914	48596900	+	RAMPAGE_only	4	6	11	0.637188	2.913977	chr19	48596922	48597093	SINE|MIR|MIR	+	chr19	48595785	48599423	SULT2B1|ENST00000597923.1	+	48595785,48599134	48596919,48599423	1.000000
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	154928432	154928506	154928503	+	High_confidence	29	29	53	3.070087	4.810735	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.943396
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	52702940	52702982	52702981	-	High_confidence	4	4	17	0.984745	3.202820	chr12	52702853	52702934	LINE|L2|L2b	-	chr12	52689625	52703463	KRT77|ENST00000341809.7	-	52689625,52691937,52692420,52692754,52694625,52695771,52696369,52697681,52702891	52691439,52691972,52692641,52692880,52694790,52695867,52696430,52697896,52703463	0.764706
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	58578112	58578138	58578123	-	High_confidence	6	7	32	1.853638	3.963711	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.718750
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	571765	571771	571770	-	High_confidence	6	6	12	0.695114	2.550341	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.916667
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	174874418	174874454	174874418	+	High_confidence	21	25	79	4.576168	5.182036	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.734177
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	209429031	209429062	209429061	+	High_confidence	6	6	11	0.637188	2.663533	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429082	209430621	MIR205HG|ENST00000444286.1	+	209429082,209430424	209429408,209430621	0.545455
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	93455158	93455185	93455182	+	RAMPAGE_only	6	6	21	1.216450	3.689704	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.952381
skin_of_body_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	4143193	4143218	4143199	+	High_confidence	72	77	161	9.326115	5.328212	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	1.000000
SK_MEL_5_cytosolic_fraction	chr20	44738969	44738993	44738992	-	High_confidence	12	17	44	1.396886	5.007660	chr20	44738735	44739078	LTR|ERVL-MaLR|MLT1J2	-	chr20	44694891	44738896	KCNK15-AS1|ENST00000427598.5	-	44694891,44716624,44738819	44695507,44716793,44738896	0.613636
SK_MEL_5_cytosolic_fraction	chr21	38121347	38121359	38121347	-	High_confidence	8	8	15	0.476211	3.378783	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	37623558	38121345	KCNJ6|ENST00000645093.1	-	37623558,37714210,37840657,38120306,38121127	37625484,37715131,37840709,38120408,38121345	0.600000
SK_MEL_5_cytosolic_fraction	chr15	69422893	69422915	69422893	+	High_confidence	2	2	7	0.222232	2.807355	chr15	69422804	69423097	SINE|Alu|AluSx	-	chr15	69422899	69447918	KIF23|ENST00000558585.5	+	69422899,69423158,69425281,69426069,69426335,69429110,69435482,69435651,69436137,69436563,69438247,69439903,69440307,69444789,69446008,69446282,69446870,69447791	69423034,69423329,69425323,69426182,69426457,69429213,69435562,69435771,69436261,69436722,69438405,69440077,69440487,69445041,69446091,69446364,69446941,69447918	0.714286
SK_MEL_5_cytosolic_fraction	chr2	3536839	3536899	3536845	-	High_confidence	4	4	37	1.174654	4.672140	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.891892
SK_MEL_5_cytosolic_fraction	chrX	24077229	24077342	24077257	+	RAMPAGE_only	8	8	95	3.016005	4.396753	chrX	24077071	24077365	SINE|Alu|AluSx	-	chrX	24054947	24078810	EIF2S3|NM_001415.3	+	24054947,24055614,24057420,24057632,24060087,24062415,24064200,24065997,24067963,24071557,24073090,24076721	24055037,24055678,24057548,24057754,24060182,24062574,24064335,24066092,24068108,24071727,24073263,24078810	0.989474
SK_MEL_5_cytosolic_fraction	chr14	101731384	101731433	101731413	+	High_confidence	285	286	704	22.350181	7.042851	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.887784
SK_MEL_5_cytosolic_fraction	chr1	70947347	70947396	70947392	+	High_confidence	100	117	376	11.937029	6.945973	chr1	70947197	70947555	LTR|ERVL-MaLR|THE1A	+	chr1	70947378	70966046	MSTRG.1223.2	+	70947378,70961047,70964845	70947475,70961258,70966046	0.688830
SK_MEL_5_cytosolic_fraction	chr5	61286085	61286122	61286121	-	RAMPAGE_only	4	4	11	0.349222	2.845351	chr5	61285925	61286300	LTR|ERVL-MaLR|MLT1A0	-	chr5	61250556	61264929	LINC02057|ENST00000503882.1	-	61250556,61252708,61264776	61250862,61252889,61264929	1.000000
SK_MEL_5_cytosolic_fraction	chr11	14337249	14337263	14337262	-	High_confidence	9	9	20	0.634948	4.221928	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.550000
SK_MEL_5_cytosolic_fraction	chr2	108189399	108189407	108189399	-	High_confidence	5	7	22	0.698443	4.201841	chr2	108189389	108189886	LTR|ERVK|LTR3B_	+	chr2	108167669	108189391	MSTRG.16930.1	-	108167669,108169497,108179153,108184457,108189361	108167769,108169586,108179281,108184682,108189391	0.909091
SK_MEL_5_cytosolic_fraction	chr5	85663215	85663243	85663215	+	High_confidence	1	1	9	0.285727	3.169925	chr5	85657593	85663641	LINE|L1|L1PA2	-	chr5	85663231	85664684	AC010595.1|ENST00000507387.1	+	85663231	85664684	0.555556
SK_MEL_5_cytosolic_fraction	chr13	64075713	64075769	64075713	-	High_confidence	24	25	163	5.174829	4.757449	chr13	64074921	64075752	LTR|ERV1|MER52A	-	chr13	63986370	64076011	LINC00355|ENST00000456627.1	-	63986370,63990095,64002384,64003347,64034346,64075241	63987039,63990200,64002409,64003465,64034537,64076011	0.938650
SK_MEL_5_cytosolic_fraction	chr19	45739662	45739663	45739662	+	RAMPAGE_only	4	4	7	0.222232	2.807355	chr19	45739451	45739778	LTR|ERVL-MaLR|MLT1K	-	chr19	45733250	45764534	BHMG1|ENST00000457052.2	+	45733250,45735376,45739625,45745191,45750674,45753650,45754478,45755969,45757176,45758877,45759413,45761678,45761938,45763337,45763970	45733666,45735447,45739730,45745321,45750786,45753788,45754724,45756078,45757277,45759033,45759490,45761867,45762183,45763427,45764534	1.000000
SK_MEL_5_cytosolic_fraction	chr17	59209387	59209406	59209392	+	High_confidence	5	5	21	0.666696	3.932138	chr17	59209373	59209528	SINE|Alu|AluSx3	-	chr17	59209399	59215239	SMG8|ENST00000543872.6	+	59209399,59209899,59212340,59212728,59214804	59209511,59211810,59212486,59213601,59215239	0.571429
SK_MEL_5_cytosolic_fraction	chr14	50756826	50756845	50756826	-	RAMPAGE_only	4	4	17	0.539706	3.734522	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
SK_MEL_5_cytosolic_fraction	chr7	103353930	103353931	103353930	+	High_confidence	8	8	9	0.285727	3.000000	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.666667
SK_MEL_5_cytosolic_fraction	chr18	31296482	31296488	31296487	+	RAMPAGE_only	4	4	10	0.317474	3.121928	chr18	31296420	31296694	SINE|Alu|AluYa5	-	chr18	32018371	32073213	RNF125|ENST00000217740.3	+	32018371,32037115,32042178,32045641,32065901,32068297	32019027,32037269,32042273,32045732,32066009,32073213	1.000000
SK_MEL_5_cytosolic_fraction	chr6	73697845	73697864	73697857	-	RAMPAGE_only	4	4	13	0.412716	3.584963	chr6	73697648	73697989	LTR|ERVL-MaLR|MLT1J2	-	chr6	73693902	73696131	AL590428.1|ENST00000428865.2	-	73693902,73695831	73695575,73696131	0.769231
SK_MEL_5_cytosolic_fraction	chr7	95407920	95407939	95407938	-	RAMPAGE_only	3	3	15	0.476211	3.506891	chr7	95407677	95408031	LINE|L2|L2c	-	chr7	95404866	95434991	PON2|ENST00000455123.5	-	95404866,95406118,95406986,95409953,95411652,95412311,95416241,95424514,95434877	95405488,95406247,95407068,95410101,95411779,95412477,95416297,95424585,95434991	1.000000
SK_MEL_5_cytosolic_fraction	chr2	61482956	61482975	61482956	-	RAMPAGE_only	2	2	12	0.380969	3.095795	chr2	61482597	61482921	SINE|Alu|AluSx3	-	chr2	61477934	61494743	XPO1|ENST00000481073.5	-	61477934,61481184,61482379,61482956,61483936,61485767,61488164,61488587,61490641,61492034,61492324,61492566,61492914,61493893	61478966,61481281,61482539,61483091,61484105,61485962,61488271,61488771,61490776,61492198,61492481,61492748,61493053,61494743	0.750000
SK_MEL_5_cytosolic_fraction	chr2	74918412	74918439	74918412	+	High_confidence	18	24	77	2.444551	5.093557	chr2	74917679	74918502	LINE|L2|L2a	-	chr2	74918147	74943470	MSTRG.16680.1	+	74918147,74931417,74932660,74938307	74918459,74931536,74932790,74943470	0.922078
SK_MEL_5_cytosolic_fraction	chr17	8042180	8042181	8042180	+	RAMPAGE_only	6	6	9	0.285727	3.000000	chr17	8041994	8042242	LTR|ERVL-MaLR|MLT1O	-	chr17	8039100	8049134	ALOX15B|ENST00000571240.1	+	8039100,8039385,8039901,8042368,8044828,8045237,8045482,8046667,8046906,8047257,8047563,8047744,8048385	8039302,8039605,8039983,8042884,8045001,8045384,8045686,8046754,8047076,8047379,8047664,8047915,8049134	0.888889
SK_MEL_5_cytosolic_fraction	chr3	178860393	178860449	178860405	-	High_confidence	15	20	73	2.317561	5.374768	chr3	178859948	178865979	LINE|L1|L1PA2	+	chr3	178525466	178860405	KCNMB2-AS1|NR_126561.1	-	178525466,178748428,178749045,178801792,178859488,178860293	178526625,178748485,178749236,178801934,178859623,178860405	0.726027
SK_MEL_5_cytosolic_fraction	chr12	91179462	91179552	91179551	-	High_confidence	12	12	93	2.952510	5.729307	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91145258	91179582	DCN|ENST00000393155.5	-	91145258,91151653,91153095,91157074,91158295,91164604,91178341,91179361	91146252,91151792,91153189,91157188,91158509,91164717,91178585,91179582	0.913978
SK_MEL_5_cytosolic_fraction	chr12	15764153	15764160	15764158	-	RAMPAGE_only	18	23	38	1.206402	4.554124	chr12	15763995	15764357	LTR|ERVL-MaLR|THE1B	-	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.631579
SK_MEL_5_cytosolic_fraction	chr3	134494761	134494787	134494765	+	High_confidence	24	24	124	3.936680	5.677722	chr3	134494583	134494832	LINE|L2|L2c	-	chr3	134495293	134565028	CEP63|ENST00000337090.7	+	134495293,134507108,134531844,134532777,134537154,134545585,134546148,134547334,134549061,134550062,134551925,134558141,134559149,134561376	134495364,134507286,134531940,134532900,134537268,134545819,134546288,134547472,134549176,134550260,134552012,134558347,134559429,134565028	0.951613
SK_MEL_5_cytosolic_fraction	chr8	69777470	69777482	69777470	-	RAMPAGE_only	3	3	7	0.222232	2.584963	chr8	69776742	69777507	LINE|L1|L1ME1	+	chr8	69672662	69832715	SLCO5A1|ENST00000530307.1	-	69672662,69676608,69679377,69682183,69705030,69755423,69761742,69831766	69673326,69676673,69679619,69682343,69705229,69755641,69761875,69832715	0.571429
SK_MEL_5_cytosolic_fraction	chr20	56367361	56367367	56367366	+	RAMPAGE_only	4	4	9	0.285727	2.750000	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	0.888889
SK_MEL_5_cytosolic_fraction	chr15	87576928	87576929	87576928	+	High_confidence	39	39	57	1.809603	5.316109	chr15	87576719	87577130	LTR|ERVL-MaLR|MSTC	+	chr15	87576928	87579866	LINC00052|ENST00000560153.2	+	87576928,87577709,87578074	87577047,87577764,87579866	0.824561
SK_MEL_5_cytosolic_fraction	chr14	89944251	89944252	89944251	-	RAMPAGE_only	9	10	11	0.349222	3.321928	chr14	89944085	89944442	LTR|ERVL-MaLR|THE1B	-	chr14	89797156	89952605	EFCAB11|ENST00000553871.5	-	89797156,89931540,89932525,89950096,89952388	89797324,89931631,89932627,89950142,89952605	0.636364
SK_MEL_5_cytosolic_fraction	chr19	45424375	45424396	45424395	-	High_confidence	10	10	31	0.984170	4.631616	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	1.000000
SK_MEL_5_cytosolic_fraction	chr12	28825838	28825962	28825961	-	High_confidence	84	181	372	11.810039	5.394066	chr12	28825676	28826170	LTR|ERVL|MLT2B3	-	chr12	28821974	28825831	AC022081.1|ENST00000537327.1	-	28821974,28825697	28822273,28825831	0.986559
SK_MEL_5_cytosolic_fraction	chr9	20658321	20658347	20658338	+	High_confidence	63	85	248	7.873359	6.042233	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658311	20674036	MSTRG.28930.3	+	20658311,20673619	20658826,20674036	0.729839
SK_MEL_5_cytosolic_fraction	chr10	2545459	2545471	2545459	+	High_confidence	17	18	29	0.920675	3.926572	chr10	2545347	2545657	SINE|Alu|AluY	-	chr10	2546204	2546439	MSTRG.2979.1	+	2546204	2546439	0.827586
SK_MEL_5_cytosolic_fraction	chr9	106107865	106107866	106107865	+	RAMPAGE_only	5	5	7	0.222232	2.521641	chr9	106107680	106108230	LTR|ERVL-MaLR|MLT1F1	+	chr9	105993309	106702662	LINC01505|ENST00000637185.1	+	105993309,106558471,106588376,106638158,106664752,106672868,106697807,106702508	105993868,106558583,106588464,106638252,106664877,106672939,106698144,106702662	0.571429
SK_MEL_5_cytosolic_fraction	chr22	35506145	35506150	35506145	-	High_confidence	101	108	171	5.428808	6.412417	chr22	35505918	35506359	LINE|L1|L1ME1	-	chr22	35502621	35506140	MSTRG.19589.3	-	35502621,35505880	35503432,35506140	0.953216
SK_MEL_5_cytosolic_fraction	chr5	140700445	140700452	140700445	+	High_confidence	3062	3452	5627	178.642713	4.616094	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.991292
SK_MEL_5_cytosolic_fraction	chr15	42404455	42404456	42404455	+	High_confidence	9	9	12	0.380969	3.251629	chr15	42404351	42404574	SINE|MIR|MIRc	-	chr15	42404778	42412315	CAPN3|ENST00000337571.8	+	42404778,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412315	1.000000
SK_MEL_5_cytosolic_fraction	chr6	5622627	5622677	5622627	+	RAMPAGE_only	8	8	29	0.920675	3.991794	chr6	5622419	5622836	LTR|ERVL-MaLR|MLT1A1	+	chr6	5261525	5771580	FARS2|ENST00000274680.8	+	5261525,5368549,5404541,5431040,5545179,5613168,5771290	5261660,5369182,5404701,5431172,5545340,5613320,5771580	0.862069
SK_MEL_5_cytosolic_fraction	chr1	239629349	239629366	239629365	+	High_confidence	2	2	6	0.190484	2.584963	chr1	239623498	239629523	LINE|L1|L1HS	-	chr1	239629072	239915452	CHRM3|ENST00000255380.8	+	239629072,239632223,239678185,239827251,239907432	239629539,239632286,239678288,239827378,239915452	0.500000
SK_MEL_5_cytosolic_fraction	chr4	32009809	32009814	32009813	-	High_confidence	4	4	9	0.285727	3.000000	chr4	32009763	32010888	LINE|L1|L1PA8A	+	chr4	32003076	32010414	MSTRG.21947.1	-	32003076,32007666,32009751,32010117	32006022,32007713,32009815,32010414	0.888889
SK_MEL_5_cytosolic_fraction	chr12	53380969	53380995	53380994	+	High_confidence	5	5	17	0.539706	3.852169	chr12	53380937	53381251	SINE|Alu|AluSp	-	chr12	53381301	53382658	SP1|ENST00000548560.1	+	53381301,53382109	53381813,53382658	0.941176
SK_MEL_5_cytosolic_fraction	chr9	97321679	97321707	97321679	+	RAMPAGE_only	2	3	9	0.285727	2.947703	chr9	97321600	97321932	LINE|L2|L2b	-	chr9	97307658	97376933	CCDC180|ENST00000529487.1	+	97307658,97307982,97309413,97312112,97313235,97314392,97314617,97314850,97317064,97318462,97320125,97322832,97323780,97325018,97326553,97328019,97330153,97330321,97343339,97347313,97349110,97350408,97354568,97354891,97357626,97359981,97361725,97362195,97364050,97365672,97366558,97369921,97370640,97371594,97374542,97375453,97376762	97307806,97308132,97309604,97312201,97313345,97314521,97314728,97314946,97317228,97318582,97320205,97322921,97323903,97325192,97326669,97328146,97330193,97330767,97343563,97347489,97349291,97350555,97354713,97355008,97357725,97360101,97361898,97362441,97364128,97365739,97366700,97370082,97370778,97371706,97374648,97375589,97376933	0.777778
SK_MEL_5_cytosolic_fraction	chr1	153119387	153119394	153119387	-	RAMPAGE_only	5	5	13	0.412716	2.855389	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112113	153113515	SPRR2F|ENST00000468739.1	-	153112113,153113473	153112752,153113515	0.923077
SK_MEL_5_cytosolic_fraction	chr5	160436734	160436797	160436796	+	High_confidence	13	13	55	1.746108	5.303693	chr5	160436638	160437010	LTR|ERVL-MaLR|THE1C	+	chr5	160436806	160437648	MSTRG.24253.1	+	160436806,160437040	160436928,160437648	0.800000
SK_MEL_5_cytosolic_fraction	chr21	18760301	18760302	18760301	-	High_confidence	9	9	9	0.285727	3.169925	chr21	18759779	18760548	LTR|ERV1|LTR17	-	chr21	18561264	18760003	MIR548XHG|ENST00000437492.5	-	18561264,18589526,18737923,18759773	18561691,18589620,18738025,18760003	0.888889
SK_MEL_5_cytosolic_fraction	chr11	123469400	123469415	123469402	+	RAMPAGE_only	134	173	287	9.111509	4.192922	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123480737	123594838	GRAMD1B|ENST00000633087.1	+	123480737,123577366,123584311,123594081,123594734	123480893,123577577,123584332,123594166,123594838	0.874564
SK_MEL_5_cytosolic_fraction	chr9	32997349	32997350	32997349	-	High_confidence	10	11	12	0.380969	3.418296	chr9	32997347	32997748	LINE|L2|L2c	-	chr9	32972762	32997360	APTX|ENST00000479656.5	-	32972762,32974457,32984630,32985970,32987543,32988078,32989758,32997242	32973652,32974561,32984857,32986030,32987842,32988124,32989895,32997360	0.916667
SK_MEL_5_cytosolic_fraction	chr11	14337098	14337117	14337098	-	High_confidence	4	4	12	0.380969	3.418296	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.500000
SK_MEL_5_cytosolic_fraction	chr15	69081274	69081280	69081279	+	High_confidence	3	3	8	0.253979	2.750000	chr15	69081240	69081323	LINE|L2|L2c	-	chr15	69080861	69095807	EWSAT1|ENST00000440444.1	+	69080861,69090914,69091691,69094700	69081376,69091114,69092367,69095807	1.000000
SK_MEL_5_cytosolic_fraction	chr1	63547821	63547856	63547836	+	High_confidence	3	3	15	0.476211	3.664498	chr1	63547557	63548048	LTR|ERVL-MaLR|MLT1H	-	chr1	63548008	63571128	EFCAB7|ENST00000460678.6	+	63548008,63551047,63551724,63557112,63561708,63568309,63571020	63548350,63551090,63551834,63557247,63561857,63568519,63571128	0.600000
SK_MEL_5_cytosolic_fraction	chr2	96303176	96303218	96303199	-	RAMPAGE_only	3	3	18	0.571453	3.524945	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
SK_MEL_5_cytosolic_fraction	chr6	31053448	31053449	31053448	+	High_confidence	4	5	6	0.190484	2.584963	chr6	31053266	31053607	LTR|ERVL-MaLR|THE1A	+	chr6	31053449	31059890	HCG22|NR_003948.2	+	31053449,31054099,31055709,31059407	31053531,31054516,31056910,31059890	1.000000
SK_MEL_5_cytosolic_fraction	chr14	50756568	50756577	50756568	-	RAMPAGE_only	2	2	7	0.222232	2.584963	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.857143
SK_MEL_5_cytosolic_fraction	chr13	39588021	39588022	39588021	-	RAMPAGE_only	6	6	9	0.285727	3.000000	chr13	39587600	39588086	LTR|ERVL|LTR33A	-	chr13	39342891	39603171	LHFPL6|ENST00000379589.3	-	39342891,39378427,39600831,39602882	39344054,39378526,39601390,39603171	0.666667
SK_MEL_5_cytosolic_fraction	chr8	83404029	83404045	83404044	+	High_confidence	3	4	7	0.222232	2.807355	chr8	83404051	83404212	LTR|ERV1|LTR37-int	+	chr8	83403757	83408900	LINC01419|NR_122034.1	+	83403757,83407691	83404069,83408900	1.000000
SK_MEL_5_cytosolic_fraction	chr1	77605141	77605199	77605181	-	RAMPAGE_only	18	21	125	3.968427	5.965985	chr1	77604959	77607065	LINE|L1|L1MA9	+	chr1	77562415	77631921	AC118549.1|ENST00000481346.5	-	77562415,77566080,77568331,77576067,77578773,77579526,77580997,77581775,77581978,77584516,77631849	77565784,77566181,77568466,77576220,77578869,77579628,77581069,77581888,77582126,77584655,77631921	0.984000
SK_MEL_5_cytosolic_fraction	chr6	125843211	125843237	125843211	+	RAMPAGE_only	7	7	26	0.825433	4.213661	chr6	125843025	125843465	LTR|ERVL-MaLR|MLT1D	+	chr6	125815217	125874968	NCOA7|ENST00000419660.1	+	125815217,125855019,125874888	125815404,125855240,125874968	0.884615
SK_MEL_5_cytosolic_fraction	chr6	28984742	28984786	28984742	+	RAMPAGE_only	2	2	11	0.349222	2.845351	chr6	28984677	28984982	SINE|Alu|AluY	-	chr6	28986202	28987484	HCG15|ENST00000438190.1	+	28986202,28986312,28986676	28986232,28986506,28987484	1.000000
SK_MEL_5_cytosolic_fraction	chr8	91069619	91069640	91069639	-	High_confidence	2	2	7	0.222232	2.584963	chr8	91068863	91069609	LINE|L1|L1M6	-	chr8	91067910	91070189	OTUD6B-AS1|ENST00000524003.1	-	91067910,91069930	91069822,91070189	0.571429
SK_MEL_5_cytosolic_fraction	chr4	158173049	158173061	158173060	-	High_confidence	4	4	13	0.412716	2.688722	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158124473	158173050	FAM198B|ENST00000585682.5	-	158124473,158130785,158155610,158170465,158172867	158127614,158131012,158155825,158171599,158173050	0.923077
SK_MEL_5_cytosolic_fraction	chr10	4268595	4268615	4268614	-	High_confidence	107	112	162	5.143081	6.669244	chr10	4268457	4268809	LTR|ERVL-MaLR|THE1A	-	chr10	4251420	4268684	MSTRG.2992.1	-	4251420,4268532	4254896,4268684	0.518519
SK_MEL_5_cytosolic_fraction	chr7	101308299	101308325	101308324	+	High_confidence	3	3	7	0.222232	2.807355	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.857143
SK_MEL_5_cytosolic_fraction	chr17	42815090	42815091	42815090	-	High_confidence	27	28	39	1.238149	4.333325	chr17	42814830	42815625	LINE|L2|L2b	+	chr17	42810309	42814673	BECN1|ENST00000588276.5	-	42810309,42814523	42810928,42814673	0.846154
SK_MEL_5_cytosolic_fraction	chr6	10434764	10434867	10434806	-	High_confidence	290	360	1252	39.747766	5.754452	chr6	10434600	10434992	LTR|ERVL-MaLR|MLT1B	-	chr6	10429795	10434817	LINC00518|ENST00000491317.1	-	10429795,10433027,10434247,10434512	10430313,10433253,10434426,10434817	0.967252
SK_MEL_5_cytosolic_fraction	chr2	191323086	191323089	191323088	+	High_confidence	25	40	48	1.523876	5.110902	chr2	191322769	191323409	LTR|ERV1|MER41B	-	chr2	191323094	191341562	MSTRG.17574.10	+	191323094,191329934,191341460	191323209,191330029,191341562	0.500000
SK_MEL_5_cytosolic_fraction	chr19	34075778	34075821	34075820	-	High_confidence	90	93	481	15.270507	6.267248	chr19	34075699	34076456	LTR|ERV1|LTR8B	+	chr19	33996946	34075901	MSTRG.15088.1	-	33996946,34000340,34003594,34005338,34061381,34075598	33998551,34000398,34003707,34005421,34061490,34075901	0.835759
SK_MEL_5_cytosolic_fraction	chr20	5010312	5010313	5010312	-	High_confidence	621	629	739	23.461341	6.899838	chr20	5010113	5010529	LTR|ERVL|MLT2B2	-	chr20	4852355	5010293	SLC23A2|ENST00000379333.5	-	4852355,4859288,4861947,4862777,4867769,4869905,4873935,4874575,4883641,4884752,4885820,4899554,4902441,4912879,4932454,4970792,5010181	4857204,4859384,4862085,4862907,4867875,4870053,4874092,4874696,4883823,4884823,4885909,4899712,4902558,4912978,4932716,4970919,5010293	0.849797
SK_MEL_5_cytosolic_fraction	chr3	73808585	73808586	73808585	+	High_confidence	5	5	8	0.253979	2.500000	chr3	73808390	73808744	LTR|ERVL-MaLR|THE1A	+	chr3	73808600	73902866	LINC02005|ENST00000498832.1	+	73808600,73869775,73878805,73902530	73808668,73869961,73878997,73902866	0.875000
SK_MEL_5_cytosolic_fraction	chr9	62376790	62376801	62376800	-	High_confidence	7	7	12	0.380969	3.084963	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	1.000000
SK_MEL_5_cytosolic_fraction	chr8	144079344	144079380	144079379	+	High_confidence	9	14	30	0.952422	3.476600	chr8	144079154	144079438	LINE|L2|L2a	+	chr8	144078625	144080647	EXOSC4|ENST00000316052.5	+	144078625,144079942,144080241	144078899,144080149,144080647	0.900000
SK_MEL_5_cytosolic_fraction	chr5	50799815	50799883	50799863	+	High_confidence	71	71	677	21.493001	5.953509	chr5	50799661	50800035	LTR|ERVL-MaLR|MLT1A0	+	chr5	50799836	50843374	MSTRG.23245.23	+	50799836,50815431,50821212,50822334,50824907,50826754,50827943,50828311,50829891,50832780,50833978,50834930,50841965	50799958,50815524,50821338,50822400,50824975,50826803,50828056,50828384,50829961,50832854,50834048,50835015,50843374	0.995569
SK_MEL_5_cytosolic_fraction	chr22	35231054	35231059	35231055	-	High_confidence	38	68	117	3.714448	6.448414	chr22	35230880	35231246	LTR|ERVL-MaLR|THE1D	-	chr22	35183874	35231051	MSTRG.19575.3	-	35183874,35194856,35215327,35230997	35192547,35195019,35215439,35231051	0.632479
SK_MEL_5_cytosolic_fraction	chr20	3795750	3795789	3795750	+	High_confidence	79	91	438	13.905368	6.290304	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.984018
SK_MEL_5_cytosolic_fraction	chr7	53811930	53811942	53811941	-	High_confidence	158	159	393	12.476735	7.145019	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53762605	53811947	MSTRG.26455.2	-	53762605,53779945,53811507	53766227,53780038,53811947	0.727735
SK_MEL_5_cytosolic_fraction	chrX	21770658	21770759	21770742	-	High_confidence	22	32	214	6.793947	5.176975	chrX	21770311	21772190	LINE|L1|L1PB1	+	chrX	21705977	21770869	MSTRG.30128.4	-	21705977,21733655,21737548,21743749,21754245,21757941,21759048,21760419,21770498	21706394,21733757,21737697,21743836,21754302,21758128,21759168,21761942,21770869	0.971963
SK_MEL_5_cytosolic_fraction	chr2	174547369	174547384	174547371	+	High_confidence	20	27	64	2.031835	5.407847	chr2	174547163	174547404	LTR|ERV1|LTR78	+	chr2	174547373	174665689	AC010894.3|ENST00000412835.1	+	174547373,174655497,174665176	174547477,174656285,174665689	0.718750
SK_MEL_5_cytosolic_fraction	chr8	86592365	86592369	86592365	-	RAMPAGE_only	6	6	10	0.317474	3.121928	chr8	86586338	86592366	LINE|L1|L1PA3	-	chr8	86573934	86743675	CNGB3|NM_019098.4	-	86573934,86578688,86579105,86604092,86611587,86625982,86628918,86632751,86643750,86644621,86647800,86654011,86666924,86668018,86670943,86726530,86739654,86743498	86576130,86578863,86579252,86604211,86611671,86626080,86629078,86632893,86643873,86644686,86647887,86654062,86667133,86668168,86671098,86726657,86739736,86743675	1.000000
SK_MEL_5_cytosolic_fraction	chr4	109251535	109251596	109251578	-	RAMPAGE_only	23	33	133	4.222406	6.046675	chr4	109250842	109253030	LTR|ERVL|ERVL-B4-int	-	chr4	108823875	109302367	COL25A1|NM_001256074.1	-	108823875,108827134,108832379,108834354,108838097,108841694,108844518,108845188,108846138,108848758,108852235,108859655,108860926,108863318,108869087,108884177,108889220,108889700,108896666,108899153,108901118,108918171,108920577,108937807,108940538,108942208,108974366,108974532,109010357,109048167,109050134,109300582,109301722	108824227,108827188,108832433,108834390,108838178,108841721,108844569,108845251,108846219,108848803,108852280,108859733,108860971,108863387,108869150,108884222,108889256,108889733,108896711,108899180,108901172,108918216,108920604,108937843,108940646,108942268,108974393,108974559,109010375,109048175,109050179,109300652,109302367	0.774436
SK_MEL_5_cytosolic_fraction	chr5	128082243	128082257	128082243	-	High_confidence	7	7	21	0.666696	3.184184	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127966734	128082881	LINC01184|ENST00000508353.5	-	127966734,128076946,128082734	127966928,128077093,128082881	0.761905
SK_MEL_5_cytosolic_fraction	chr12	28826004	28826017	28826006	-	High_confidence	3	5	10	0.317474	3.169925	chr12	28825676	28826170	LTR|ERVL|MLT2B3	-	chr12	28821974	28825831	AC022081.1|ENST00000537327.1	-	28821974,28825697	28822273,28825831	0.900000
SK_MEL_5_cytosolic_fraction	chr1	42628680	42628682	42628680	+	RAMPAGE_only	89	128	132	4.190659	5.733912	chr1	42628486	42628840	LTR|ERVL-MaLR|THE1A	+	chr1	42534888	42654664	CCDC30|NM_001080850.2	+	42534888,42536475,42539172,42545409,42556155,42566295,42577019,42581359,42589320,42610977,42637236,42642472,42644692,42646134,42653375,42653817	42534989,42536601,42539310,42545579,42556405,42566475,42577229,42581514,42589483,42611090,42637378,42642609,42644807,42646317,42653443,42654664	0.946970
SK_MEL_5_cytosolic_fraction	chr15	34988764	34988768	34988764	-	High_confidence	6	6	10	0.317474	3.169925	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.900000
SK_MEL_5_cytosolic_fraction	chr5	111338010	111338019	111338017	+	RAMPAGE_only	2	3	10	0.317474	3.169925	chr5	111337979	111338107	LINE|L1|L1ME1	-	chr5	111224541	111494886	CAMK4|NM_001323377.1	+	111224541,111344023,111374849,111394709,111446685,111449128,111473310,111478380,111482784,111484025	111224644,111344102,111374912,111394782,111446776,111449203,111473386,111478507,111482937,111494886	0.500000
SK_MEL_5_cytosolic_fraction	chr3	185689870	185689884	185689883	-	High_confidence	18	18	32	1.015917	4.240224	chr3	185689686	185689988	SINE|Alu|AluYa5	+	chr3	185649402	185689238	IGF2BP2|ENST00000494906.1	-	185649402,185652093,185657285,185658340,185675295,185675790,185687056,185689107	185649534,185652168,185657402,185658409,185675431,185675913,185687191,185689238	0.750000
SK_MEL_5_cytosolic_fraction	chr11	58578064	58578069	58578064	+	RAMPAGE_only	2	3	9	0.285727	3.000000	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58579110	58621042	ZFP91|ENST00000316059.6	+	58579110,58584855,58609829,58610297,58610949,58611603,58612277,58612761,58614228,58616715,58617195	58579622,58584884,58610039,58610334,58611054,58611738,58612328,58612840,58614343,58616815,58621042	0.888889
SK_MEL_5_cytosolic_fraction	chr18	73264469	73264502	73264501	-	High_confidence	52	53	264	8.381318	6.587787	chr18	73264307	73264608	SINE|Alu|AluY	+	chr18	73154057	73264498	LOC400655|NR_034133.1	-	73154057,73159540,73161823,73200652,73255812,73264239	73155935,73159664,73161973,73200789,73255918,73264498	0.640152
SK_MEL_5_cytosolic_fraction	chr12	92803012	92803013	92803012	-	RAMPAGE_only	5	7	7	0.222232	2.807355	chr12	92802868	92803021	SINE|MIR|MIR3	-	chr12	92770636	92929331	EEA1|ENST00000322349.12	-	92770636,92776843,92777542,92777940,92779114,92780279,92781949,92787866,92798891,92801599,92802403,92809016,92811278,92812979,92816199,92819307,92826165,92827911,92832511,92842464,92851110,92852174,92852911,92853914,92857274,92857430,92864859,92891628,92929042	92776133,92776942,92777663,92778179,92779300,92780411,92782135,92788049,92799086,92801701,92802734,92809156,92811434,92813093,92816400,92819511,92826285,92828061,92832850,92842581,92851266,92852296,92853025,92853954,92857340,92857485,92864987,92891721,92929331	1.000000
SK_MEL_5_cytosolic_fraction	chr9	127451076	127451128	127451104	-	High_confidence	11	11	32	1.015917	4.502583	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.937500
SK_MEL_5_cytosolic_fraction	chr6	31494687	31494710	31494687	+	High_confidence	2	2	10	0.317474	2.947703	chr6	31494550	31494850	SINE|Alu|AluSp	+	chr6	31494880	31511124	MICB|NM_001289160.1	+	31494880,31505616,31506142,31507021,31507399,31509781	31494995,31505871,31506430,31507300,31507531,31511124	0.800000
SK_MEL_5_cytosolic_fraction	chr1	175107651	175107652	175107651	-	High_confidence	187	187	187	5.936767	5.891488	chr1	175107104	175109022	LTR|ERV1|LTR12C	-	chr1	175101761	175107664	MSTRG.2264.1	-	175101761,175107020	175103105,175107664	1.000000
SK_MEL_5_cytosolic_fraction	chr2	3536496	3536514	3536496	-	High_confidence	2	2	7	0.222232	2.584963	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.571429
SK_MEL_5_cytosolic_fraction	chr2	55615665	55615686	55615685	-	High_confidence	4	4	9	0.285727	2.503258	chr2	55615580	55615882	SINE|Alu|AluSc	+	chr2	55598697	55616617	PPP4R3B|ENST00000470801.1	-	55598697,55603977,55615450,55616517	55599039,55604076,55615506,55616617	1.000000
SK_MEL_5_cytosolic_fraction	chr3	107202191	107202221	107202191	-	RAMPAGE_only	3	3	18	0.571453	3.947703	chr3	107202050	107202173	SINE|MIR|MIRc	-	chr3	107111484	107240627	LINC00882|ENST00000479612.6	-	107111484,107129887,107240442	107112146,107129992,107240627	0.500000
SK_MEL_5_cytosolic_fraction	chr8	12796474	12796487	12796486	-	High_confidence	3	3	10	0.317474	2.721928	chr8	12796147	12797467	LTR|ERV1|LTR12C	+	chr8	12766051	12796446	MSTRG.27689.2	-	12766051,12767729,12778253,12788331,12796136	12766595,12767849,12778356,12788444,12796446	0.600000
SK_MEL_5_cytosolic_fraction	chr11	34089397	34089436	34089435	+	High_confidence	7	7	29	0.920675	4.162295	chr11	34089484	34089623	SINE|Alu|AluJr	+	chr11	34090025	34101151	CAPRIN1|ENST00000533657.5	+	34090025,34090528,34091905,34096478,34097195,34097697,34099302	34090289,34090678,34092056,34096673,34097296,34097761,34101151	0.931034
SK_MEL_5_cytosolic_fraction	chr12	19447715	19447716	19447715	+	RAMPAGE_only	13	13	17	0.539706	3.875000	chr12	19447707	19447850	SINE|MIR|MIRc	+	chr12	19440580	19520223	AEBP2|ENST00000360995.8	+	19440580,19462509,19473247,19493799,19500096,19512397,19514670,19518086,19518674	19440727,19462717,19473355,19493986,19500221,19512465,19514784,19518113,19520223	0.764706
SK_MEL_5_cytosolic_fraction	chr12	9570650	9570670	9570650	+	RAMPAGE_only	38	44	158	5.016092	4.062395	chr12	9570334	9570702	LINE|L1|L1MDa	+	chr12	9569102	9576268	MSTRG.5920.8	+	9569102,9570762,9571460,9573002,9573465,9574846,9575642	9569202,9570892,9571573,9573093,9573534,9574949,9576268	0.987342
SK_MEL_5_cytosolic_fraction	chr3	193614836	193614861	193614860	+	High_confidence	4	4	11	0.349222	2.845351	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	1.000000
SK_MEL_5_cytosolic_fraction	chr18	3857692	3857697	3857696	-	RAMPAGE_only	3	4	7	0.222232	2.807355	chr18	3857472	3857863	LINE|L2|L2c	+	chr18	3496031	3845359	DLGAP1|ENST00000400147.6	-	3496031,3502492,3508569,3534193,3567489,3581874,3729134,3742334,3814058,3845231	3499394,3502645,3508661,3534615,3567581,3582248,3729375,3742512,3814273,3845359	0.571429
SK_MEL_5_cytosolic_fraction	chr8	86413407	86413425	86413407	+	High_confidence	3	3	11	0.349222	2.921928	chr8	86413309	86413645	LINE|L2|L2c	-	chr8	86413600	86452581	MSTRG.28262.6	+	86413600,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558	86413971,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452581	0.909091
SK_MEL_5_cytosolic_fraction	chr12	110203917	110203945	110203933	+	High_confidence	5	5	17	0.539706	3.852169	chr12	110203870	110203951	LINE|L1|HAL1	+	chr12	110203334	110218560	IFT81|ENST00000550748.1	+	110203334,110205594,110209170,110218043	110205514,110205680,110209216,110218560	1.000000
SK_MEL_5_cytosolic_fraction	chr10	86981182	86981221	86981210	+	RAMPAGE_only	3	3	10	0.317474	3.121928	chr10	86981077	86981384	LTR|ERVL-MaLR|THE1C	+	chr10	86970740	87010126	AGAP11|ENST00000433214.2	+	86970740,86983139,86983853,86992246,86993361,86994823,86999448,87000318,87001635,87004324,87007654,87008354	86970915,86983240,86983941,86992469,86993552,86994903,86999591,87000434,87001736,87004360,87007706,87010126	1.000000
SK_MEL_5_cytosolic_fraction	chr1	54413492	54413526	54413492	-	RAMPAGE_only	4	4	13	0.412716	3.392747	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54226631	54406419	SSBP3|ENST00000371320.7	-	54226631,54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54257126,54258068,54281437,54401860,54404575,54404857,54405952	54227160,54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257186,54258149,54281527,54401945,54404637,54404930,54406419	0.692308
SK_MEL_5_cytosolic_fraction	chr2	202966037	202966085	202966037	+	RAMPAGE_only	7	7	19	0.603201	3.836592	chr2	202965833	202966297	LTR|ERVL-MaLR|MLT1F2	-	chr2	202912734	202983990	CARF|NM_001322428.1	+	202912734,202917876,202941859,202942739,202952558,202954004,202955673,202961236,202966977,202969918,202971504,202974333,202977268,202981554,202982071,202983505	202913114,202918043,202941980,202942967,202952679,202954134,202955758,202961426,202967098,202970062,202971738,202974496,202977332,202981685,202982441,202983990	0.736842
SK_MEL_5_cytosolic_fraction	chr2	74154140	74154152	74154140	-	RAMPAGE_only	4	5	10	0.317474	2.947703	chr2	74153879	74154210	SINE|Alu|AluY	+	chr2	74152597	74178314	MOB1A|NM_001317111.1	-	74152597,74159090,74165217,74167013,74172585,74178114	74156645,74159254,74165351,74167107,74172752,74178314	0.900000
SK_MEL_5_cytosolic_fraction	chr17	79936528	79936842	79936620	-	RAMPAGE_only	13	13	292	9.270246	5.045492	chr17	79936414	79936582	SINE|MIR|MIRc	-	chr17	79932342	79950857	TBC1D16|NM_001271844.1	-	79932342,79942059,79944907,79947644,79948871,79949716,79950410,79950755	79941107,79942206,79945087,79947831,79949006,79949823,79950578,79950857	1.000000
SK_MEL_5_cytosolic_fraction	chr11	123625738	123625754	123625738	+	RAMPAGE_only	4	5	16	0.507959	3.702820	chr11	123625572	123625740	SINE|MIR|MIR3	+	chr11	123591086	123627774	GRAMD1B|ENST00000646146.1	+	123591086,123594081,123594734,123595941,123600467,123603425,123605321,123606608,123608658,123609794,123610195,123612760,123613454,123614744,123618344,123618692,123619106,123622505	123591541,123594166,123594838,123596037,123600548,123603541,123605478,123606798,123608802,123609913,123610338,123612864,123613658,123614835,123618356,123618800,123619224,123627774	1.000000
SK_MEL_5_cytosolic_fraction	chr12	54187904	54187905	54187904	-	High_confidence	21	21	21	0.666696	4.201841	chr12	54187852	54187993	LINE|L2|L2c	-	chr12	54181484	54187906	SMUG1|ENST00000505662.1	-	54181484,54183764,54187818	54182623,54183959,54187906	0.571429
SK_MEL_5_cytosolic_fraction	chr1	210439435	210439451	210439448	+	High_confidence	81	81	223	7.079674	6.670151	chr1	210438946	210439615	LTR|ERVL|ERVL-B4-int	-	chr1	210439385	210676296	MSTRG.2565.11	+	210439385,210464504,210513152,210587897,210623525,210674287	210439478,210464655,210513188,210588099,210623670,210676296	0.695067
SK_MEL_5_cytosolic_fraction	chr8	57746128	57746131	57746128	+	High_confidence	15	15	23	0.730191	3.534219	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	1.000000
SK_MEL_5_cytosolic_fraction	chr12	9406355	9406356	9406355	-	RAMPAGE_only	33	33	38	1.206402	3.965584	chr12	9406304	9406453	LTR|ERV1|HERVE-int	+	chr12	9397056	9407535	MSTRG.5913.1	-	9397056,9397614,9398381,9399794,9400235,9401746,9402426,9406307,9407307	9397214,9397689,9398484,9399863,9400326,9401859,9402556,9406408,9407535	0.947368
SK_MEL_5_cytosolic_fraction	chr11	17866878	17866881	17866880	-	High_confidence	189	289	295	9.365488	5.758083	chr11	17866710	17867056	LTR|ERVL-MaLR|THE1B	-	chr11	17788047	17866864	SERGEF|ENST00000531299.5	-	17788047,17866790	17788413,17866864	0.908475
SK_MEL_5_cytosolic_fraction	chr2	75871903	75871936	75871935	+	High_confidence	10	10	18	0.571453	3.947703	chr2	75871689	75872461	LTR|ERV1|LTR17	+	chr2	75871941	75880231	MSTRG.16698.1	+	75871941,75879069	75872492,75880231	0.888889
SK_MEL_5_cytosolic_fraction	chr12	84983479	84983494	84983479	+	RAMPAGE_only	2	2	8	0.253979	2.521641	chr12	84983522	84983645	LTR|Gypsy?|LTR85a	+	chr12	84986787	84992631	MSTRG.6787.1	+	84986787,84988941,84992569	84987002,84989037,84992631	0.750000
SK_MEL_5_cytosolic_fraction	chr3	187021850	187021896	187021851	+	High_confidence	96	183	340	10.794122	4.820353	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.982353
SK_MEL_5_cytosolic_fraction	chr11	71473653	71473674	71473673	+	High_confidence	3	3	6	0.190484	2.584963	chr11	71473716	71473794	LINE|L2|L2b	+	chr11	71474394	71482986	NADSYN1|ENST00000527852.6	+	71474394,71477344,71478394,71480754,71481355,71481922,71482848	71474526,71477438,71478469,71480879,71481404,71482025,71482986	1.000000
SK_MEL_5_cytosolic_fraction	chr3	195356169	195356212	195356211	-	High_confidence	106	119	224	7.111421	5.029031	chr3	195355936	195357733	LINE|L1|L1M1	+	chr3	195333081	195356212	ACAP2|ENST00000423531.3	-	195333081,195336931,195342470,195345258,195356067	195333123,195336976,195342654,195345317,195356212	0.875000
SK_MEL_5_cytosolic_fraction	chr12	37489557	37489565	37489564	+	High_confidence	3	3	9	0.285727	3.169925	chr12	37489351	37489691	LTR|ERVL-MaLR|THE1D	+	chr12	37489521	37525326	MSTRG.6183.1	+	37489521,37489906,37512472,37519620,37521542	37489609,37490003,37512597,37519755,37525326	1.000000
SK_MEL_5_cytosolic_fraction	chr7	46696914	46696944	46696914	-	High_confidence	9	9	35	1.111160	4.594672	chr7	46695111	46697207	LINE|L1|L1MC2	+	chr7	46687878	46697122	LOC730338|NR_134575.1	-	46687878,46692810,46697002	46689546,46692969,46697122	0.942857
SK_MEL_5_cytosolic_fraction	chr11	26597182	26597205	26597182	-	High_confidence	54	58	185	5.873272	5.764200	chr11	26597150	26597675	LTR|ERV1|LTR17	-	chr11	26589429	26597452	MSTRG.4499.1	-	26589429,26597118	26591959,26597452	0.686486
SK_MEL_5_cytosolic_fraction	chr8	89403565	89403566	89403565	+	High_confidence	22	30	30	0.952422	4.254196	chr8	89403371	89403724	LTR|ERVL-MaLR|THE1A	+	chr8	89403584	89436720	MSTRG.28245.1	+	89403584,89436487	89403648,89436720	0.633333
SK_MEL_5_cytosolic_fraction	chr9	82757866	82757869	82757866	-	RAMPAGE_only	27	28	43	1.365139	3.684794	chr9	82751810	82757866	LINE|L1|L1PA3	-	chr9	82744066	82744792	RPS6P12|ENST00000432491.1	-	82744066	82744792	0.744186
SK_MEL_5_cytosolic_fraction	chr17	35432507	35432534	35432533	-	High_confidence	4	4	9	0.285727	3.000000	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.888889
SK_MEL_5_cytosolic_fraction	chr10	103181328	103181329	103181328	-	High_confidence	9	9	10	0.317474	3.169925	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103097307	103181329	MSTRG.3874.10	-	103097307,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857,103181230	103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982,103181329	0.600000
SK_MEL_5_cytosolic_fraction	chr17	59234289	59234314	59234313	+	RAMPAGE_only	6	6	35	1.111160	4.457575	chr17	59234099	59234367	SINE|Alu|AluY	+	chr17	59220561	59274512	MSTRG.13152.5	+	59220561,59234491,59245413,59248739,59257121,59257750,59267040,59270935,59272784,59273650,59274167	59220751,59234534,59245549,59248785,59257240,59257840,59267174,59270995,59272836,59274027,59274512	0.942857
SK_MEL_5_cytosolic_fraction	chr3	37163366	37163377	37163366	-	RAMPAGE_only	306	320	485	15.397497	7.109083	chr3	37163292	37163695	LTR|ERVL-MaLR|MLT1J2	+	chr3	37052889	37174564	LRRFIP2|ENST00000336686.8	-	37052889,37054410,37055085,37058789,37063741,37065809,37066223,37072789,37075023,37083635,37091466,37094791,37096615,37102923,37105454,37108072,37108636,37109526,37109652,37110990,37112914,37115053,37121491,37121634,37127629,37129062,37148893,37174538	37053961,37054515,37055165,37058910,37063791,37065942,37066325,37072882,37075116,37083806,37091538,37094908,37096660,37103013,37105523,37108129,37108684,37109571,37109703,37111065,37112980,37115095,37121536,37121691,37127680,37129149,37149038,37174564	0.521649
SK_MEL_5_cytosolic_fraction	chr7	102822456	102822461	102822458	-	RAMPAGE_only	17	21	34	1.079412	4.910992	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.794118
SK_MEL_5_cytosolic_fraction	chr22	39320352	39320361	39320360	-	High_confidence	2	2	8	0.253979	2.521641	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.875000
SK_MEL_5_cytosolic_fraction	chr9	102652628	102652652	102652628	-	High_confidence	780	782	2303	73.114300	7.640416	chr9	102652585	102653273	LTR|ERV1|MER50	+	chr9	102552027	102652665	MSTRG.29450.2	-	102552027,102579341,102652565	102553950,102579492,102652665	0.864525
SK_MEL_5_cytosolic_fraction	chr7	94022801	94022863	94022801	+	High_confidence	9	13	25	0.793685	4.243856	chr7	94022613	94022990	LTR|ERVL-MaLR|THE1C	+	chr7	94022832	94064723	AC003092.1|ENST00000415536.5	+	94022832,94061455,94061768,94064425	94022907,94061625,94061864,94064723	0.800000
SK_MEL_5_cytosolic_fraction	chr15	63237297	63237317	63237316	+	RAMPAGE_only	3	3	9	0.285727	3.169925	chr15	63236622	63238155	LINE|L1|L1MA3	-	chr15	63189605	63262776	RAB8B|ENST00000559006.1	+	63189605,63244755,63249644,63255506,63256504,63259626,63262691	63189748,63244816,63249705,63255584,63256594,63259692,63262776	0.777778
SK_MEL_5_cytosolic_fraction	chr3	53238995	53239017	53239016	-	RAMPAGE_only	4	4	15	0.476211	3.182006	chr3	53238928	53239286	LTR|ERVL-MaLR|THE1B	+	chr3	53225656	53242199	MSTRG.20521.4	-	53225656,53226755,53228055,53228275,53229006,53229279,53230456,53231356,53233155,53234982,53240250,53241131,53242124	53225931,53226878,53228149,53228359,53229137,53229436,53230621,53232839,53233274,53235174,53240348,53241245,53242199	0.866667
SK_MEL_5_cytosolic_fraction	chr3	15679300	15679338	15679300	-	RAMPAGE_only	6	6	18	0.571453	3.734522	chr3	15678993	15679268	SINE|Alu|AluJr	-	chr3	15670109	15719704	MSTRG.20065.6	-	15670109,15675897,15676973,15677479,15678208,15679300,15679475,15685225,15686001,15686221,15690018,15694738,15695187,15696133,15707923,15709667,15711210,15712139,15713526,15714577,15719602	15670556,15675989,15677056,15677562,15678354,15679384,15679563,15685445,15686119,15686309,15690220,15694813,15695214,15696245,15708064,15709736,15711274,15712222,15713641,15714656,15719704	0.555556
SK_MEL_5_cytosolic_fraction	chr22	39320287	39320329	39320328	-	High_confidence	3	4	11	0.349222	3.321928	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.909091
SK_MEL_5_cytosolic_fraction	chr20	37297344	37297345	37297344	+	High_confidence	6	6	6	0.190484	2.584963	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
SK_MEL_5_cytosolic_fraction	chr13	103464532	103464546	103464532	+	High_confidence	75	79	185	5.873272	5.823436	chr13	103464432	103464730	SINE|Alu|AluY	-	chr13	103464552	103515873	MSTRG.7985.1	+	103464552,103515686	103464956,103515873	0.508108
SK_MEL_5_cytosolic_fraction	chr9	100429514	100429550	100429549	+	High_confidence	76	76	317	10.063931	5.831159	chr9	100429405	100429575	LINE|L2|L2b	-	chr9	100429513	100451734	MSANTD3|NM_001198806.1	+	100429513,100441905,100450556	100429662,100442356,100451734	0.971609
SK_MEL_5_cytosolic_fraction	chr9	98045561	98045584	98045561	+	RAMPAGE_only	2	2	8	0.253979	2.807355	chr9	98045312	98045711	LTR|ERV1|MER57B1	+	chr9	98056676	98083083	NANS|NM_018946.3	+	98056676,98060781,98076917,98078192,98080815,98082845	98056940,98060997,98077017,98078347,98081082,98083083	0.500000
SK_MEL_5_cytosolic_fraction	chr6	64389853	64389915	64389872	-	RAMPAGE_only	3	3	21	0.666696	3.181366	chr6	64389760	64395796	LINE|L1|L1PA2	+	chr6	63720135	65707214	EYS|ENST00000370621.7	-	63720135,63726518,63741912,63762460,63778005,63788104,63789057,63806189,63864185,63984382,63999074,64066337,64081855,64230591,64306969,64388689,64436173,64439161,64590222,64593116,64617417,64626120,64813377,64821644,64822650,64886696,64902112,64902403,64912483,64945792,64997581,65057613,65295862,65334979,65344037,65353457,65384385,65402477,65405173,65490593,65494662,65495858,65639777,65707134	63721797,63726680,63741975,63762633,63778180,63788249,63789224,63806372,63864358,63984603,63999183,64066491,64082002,64230824,64307082,64388840,64436265,64439352,64591989,64593309,64617533,64626245,64813577,64821723,64822822,64886842,64902220,64902500,64912743,64945914,64997703,65057727,65296119,65335146,65344177,65353617,65384500,65402605,65405367,65490707,65495607,65495993,65639892,65707214	0.714286
SK_MEL_5_cytosolic_fraction	chr8	18083285	18083302	18083285	-	High_confidence	7	7	18	0.571453	4.058814	chr8	18083239	18083389	SINE|MIR|MIR3	+	chr8	18066901	18083184	ASAH1|ENST00000636269.1	-	18066901,18069791,18071299,18075540,18083121	18067298,18069878,18071390,18075587,18083184	0.500000
SK_MEL_5_cytosolic_fraction	chr2	29114123	29114171	29114158	+	High_confidence	5	6	32	1.015917	4.453881	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.968750
SK_MEL_5_cytosolic_fraction	chr4	73806950	73806958	73806956	-	RAMPAGE_only	12	19	32	1.015917	3.304229	chr4	73805101	73807113	LINE|L1|L1PA15	+	chr4	73777635	73778060	AC112518.2|ENST00000508565.2	-	73777635	73778060	0.906250
SK_MEL_5_cytosolic_fraction	chr1	62516752	62516757	62516756	-	High_confidence	6	6	11	0.349222	2.845351	chr1	62516540	62517265	LINE|L2|L2	+	chr1	62505790	62516841	DOCK7|ENST00000635286.1	-	62505790,62507961,62510576,62513470,62513715,62516800	62505816,62508058,62510673,62513606,62513898,62516841	0.818182
SK_MEL_5_cytosolic_fraction	chr19	35399508	35399603	35399538	+	High_confidence	180	191	589	18.699228	6.680405	chr19	35399184	35399804	LTR|ERV1|MER49	+	chr19	35399530	35419370	LINC01531|ENST00000601669.6	+	35399530,35406584,35408998,35409285,35411161,35419159	35399657,35406697,35409151,35409472,35411282,35419370	0.578947
SK_MEL_5_cytosolic_fraction	chr19	51354770	51354783	51354782	-	High_confidence	5	5	12	0.380969	3.027169	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.916667
SK_MEL_5_cytosolic_fraction	chr7	82894474	82894477	82894476	-	High_confidence	2771	4586	6159	195.532338	7.427760	chr7	82894311	82894657	LTR|ERVL-MaLR|THE1B	-	chr7	82820476	82894454	MSTRG.26726.3	-	82820476,82824235,82826588,82827872,82838217,82841458,82845270,82846566,82847138,82879336,82894396	82822689,82824416,82826660,82827966,82838342,82841509,82845485,82846634,82847247,82879462,82894454	0.649456
SK_MEL_5_cytosolic_fraction	chr7	151468584	151468585	151468584	-	RAMPAGE_only	15	16	21	0.666696	3.975418	chr7	151468185	151468817	LINE|L2|L2a	+	chr7	151466011	151519924	RHEB|ENST00000262187.9	-	151466011,151470570,151471393,151471548,151477332,151484736,151490942,151519459	151467211,151470652,151471441,151471605,151477415,151484804,151491014,151519924	0.619048
SK_MEL_5_cytosolic_fraction	chr1	231565491	231565528	231565497	+	RAMPAGE_only	3	3	19	0.603201	3.725481	chr1	231565443	231565749	SINE|Alu|AluSg	+	chr1	231534119	231566524	TSNAX|ENST00000475168.1	+	231534119,231542480,231561127,231563464,231564527	231537327,231542611,231561255,231563629,231566524	0.947368
SK_MEL_5_cytosolic_fraction	chr6	13323874	13323894	13323874	-	RAMPAGE_only	10	10	32	1.015917	4.567100	chr6	13323838	13324041	SINE|MIR|MIRb	+	chr6	13307713	13320981	TBC1D7|ENST00000607208.1	-	13307713,13316570,13318097,13320907	13307745,13316708,13318193,13320981	0.593750
SK_MEL_5_cytosolic_fraction	chrX	16712958	16712979	16712958	-	High_confidence	7	7	12	0.380969	3.277613	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16587998	16712979	CTPS2|NM_019857.4	-	16587998,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712979	0.833333
SK_MEL_5_cytosolic_fraction	chr10	34405962	34405966	34405965	-	High_confidence	26	26	56	1.777855	5.142646	chr10	34405665	34405965	LTR|ERVL|LTR40b	-	chr10	34312263	34405959	MSTRG.3225.15	-	34312263,34317106,34331116,34336198,34337274,34341626,34347955,34359146,34360070,34374873,34377966,34382539,34384128,34399329,34401825,34405659	34312382,34317338,34331344,34336243,34337426,34341816,34348115,34359317,34360259,34375002,34378106,34382922,34384254,34399413,34401917,34405959	0.875000
SK_MEL_5_cytosolic_fraction	chr12	84983526	84983570	84983541	+	RAMPAGE_only	13	13	76	2.412804	4.653574	chr12	84983522	84983645	LTR|Gypsy?|LTR85a	+	chr12	84986787	84992631	MSTRG.6787.1	+	84986787,84988941,84992569	84987002,84989037,84992631	0.697368
SK_MEL_5_cytosolic_fraction	chr1	145410613	145410614	145410613	-	RAMPAGE_only	14	14	14	0.444464	3.378783	chr1	145410314	145410612	SINE|Alu|AluYa8	-	chr1	144547438	144547714	MSTRG.1682.1	-	144547438	144547714	1.000000
SK_MEL_5_cytosolic_fraction	chr12	9645304	9645305	9645304	+	RAMPAGE_only	18	18	24	0.761938	4.061482	chr12	9645124	9645474	LTR|ERVL-MaLR|THE1B	+	chr12	9642867	9658415	LOC374443|NR_046449.2	+	9642867,9653682,9655872,9656920	9643103,9653808,9655979,9658415	0.875000
SK_MEL_5_cytosolic_fraction	chr14	83638916	83638920	83638916	+	High_confidence	21	22	47	1.492129	4.716618	chr14	83638774	83639162	LTR|ERVL-MaLR|THE1D	+	chr14	83638959	83658709	MSTRG.8847.1	+	83638959,83639299,83646543,83658422	83639082,83639395,83646654,83658709	0.595745
SK_MEL_5_cytosolic_fraction	chr9	106278141	106278339	106278141	+	High_confidence	32	35	351	11.143343	6.813842	chr9	106277947	106278267	LINE|RTE-X|L4_C_Mam	+	chr9	106278391	106604795	LINC01505|ENST00000435485.5	+	106278391,106279100,106499486,106500356,106558471,106588376,106603755	106278472,106279190,106499612,106500505,106558583,106588464,106604795	0.806268
SK_MEL_5_cytosolic_fraction	chr12	31113817	31113831	31113819	-	RAMPAGE_only	5	9	18	0.571453	3.690117	chr12	31113368	31114069	LINE|L1|L1MA9	+	chr12	31111656	31116460	AC024940.1|ENST00000542925.5	-	31111656,31112980,31114395,31114836,31116356	31111809,31113083,31114464,31114927,31116460	0.833333
SK_MEL_5_cytosolic_fraction	chr14	50754772	50754773	50754772	-	RAMPAGE_only	7	8	9	0.285727	2.750000	chr14	50754738	50754803	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.888889
SK_MEL_5_cytosolic_fraction	chr12	93173456	93173486	93173479	+	High_confidence	10	11	43	1.365139	4.150200	chr12	93173471	93174015	LINE|L2|L2c	-	chr12	93174365	93181832	LOC102724933|NR_120492.1	+	93174365,93175899,93181304	93174976,93176029,93181832	0.860465
SK_MEL_5_cytosolic_fraction	chr11	125874376	125874412	125874411	-	High_confidence	41	45	233	7.397148	4.032052	chr11	125874041	125875038	LTR|ERV1|HUERS-P3-int	+	chr11	125873030	125874398	AP000842.3|ENST00000564354.1	-	125873030,125874245	125873685,125874398	0.884120
SK_MEL_5_cytosolic_fraction	chr3	178860335	178860367	178860366	-	High_confidence	4	5	18	0.571453	4.169925	chr3	178859948	178865979	LINE|L1|L1PA2	+	chr3	178526504	178860352	KCNMB2-AS1|ENST00000437488.5	-	178526504,178535713,178537260,178748403,178749045,178757079,178859488,178860293	178526625,178535899,178537396,178748485,178749236,178757133,178859623,178860352	0.666667
SK_MEL_5_cytosolic_fraction	chr1	222064772	222064773	222064772	-	High_confidence	86	104	105	3.333479	4.116022	chr1	222064600	222064953	LTR|ERVL-MaLR|THE1B	-	chr1	222041704	222064763	LINC01705|ENST00000438158.1	-	222041704,222058413,222064684	222041922,222058678,222064763	0.904762
SK_MEL_5_cytosolic_fraction	chr3	197953544	197953545	197953544	+	High_confidence	6	6	8	0.253979	2.750000	chr3	197953519	197953867	LINE|L2|L2a	+	chr3	197953562	197955851	RPL35A|ENST00000474640.1	+	197953562,197955749	197954147,197955851	0.875000
SK_MEL_5_cytosolic_fraction	chr7	30548892	30548917	30548892	-	RAMPAGE_only	3	3	13	0.412716	3.546594	chr7	30548762	30548906	LTR|Gypsy?|LTR88b	-	chr7	30516974	30561516	GARS-DT|ENST00000578293.6	-	30516974,30524366,30550635,30551317,30552099,30561465	30517498,30524486,30550781,30551395,30552179,30561516	0.538462
SK_MEL_5_cytosolic_fraction	chr3	128104796	128104808	128104796	-	RAMPAGE_only	3	3	7	0.222232	2.584963	chr3	128104760	128104822	LINE|CR1|L3	-	chr3	128081181	128100744	RUVBL1|ENST00000478892.1	-	128081181,128082482,128087705,128097299,128098881,128100594	128081409,128082574,128087844,128097498,128098945,128100744	0.857143
SK_MEL_5_cytosolic_fraction	chr10	34405697	34405711	34405710	-	High_confidence	3	3	8	0.253979	2.807355	chr10	34405665	34405965	LTR|ERVL|LTR40b	-	chr10	34269786	34405956	MSTRG.3225.9	-	34269786,34284134,34317106,34331116,34336198,34337274,34341626,34347964,34359146,34360070,34372497,34374873,34377966,34382539,34384128,34399329,34401825,34405659	34269899,34284245,34317338,34331344,34336243,34337426,34341816,34348115,34359317,34360259,34372536,34375002,34378106,34382922,34384254,34399413,34401917,34405956	0.750000
SK_MEL_5_cytosolic_fraction	chr15	35444051	35444069	35444058	-	RAMPAGE_only	14	14	70	2.222319	5.202302	chr15	35443885	35444082	LTR|ERVL|LTR80B	-	chr15	35372106	35454760	DPH6|ENST00000558266.5	-	35372106,35373520,35381821,35410834,35450684,35454746	35372193,35373608,35381916,35410896,35450803,35454760	0.800000
SK_MEL_5_cytosolic_fraction	chr12	9407471	9407507	9407506	-	High_confidence	4030	4774	13347	423.732769	6.365956	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9397056	9407535	MSTRG.5913.6	-	9397056,9397614,9398381,9399794,9400235,9401746,9402426,9406307,9406861	9397214,9397689,9398484,9399863,9400326,9401859,9402556,9406398,9407535	0.981794
SK_MEL_5_cytosolic_fraction	chr8	87755735	87755736	87755735	-	High_confidence	35	35	41	1.301644	4.826875	chr8	87755567	87755932	LTR|ERVL-MaLR|THE1B	-	chr8	87540834	87755695	AF121898.1|ENST00000440763.6	-	87540834,87636600,87751206,87755651	87542489,87636650,87751317,87755695	0.512195
SK_MEL_5_cytosolic_fraction	chr19	51350348	51350364	51350363	-	RAMPAGE_only	4	4	9	0.285727	2.750000	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.888889
SK_MEL_5_cytosolic_fraction	chrX	94600170	94600194	94600177	-	High_confidence	52	53	126	4.000174	5.314012	chrX	94599902	94600549	LTR|ERVL|LTR66	-	chrX	94569313	94600183	MSTRG.30532.1	-	94569313,94570782,94600106	94570146,94571148,94600183	0.809524
SK_MEL_5_cytosolic_fraction	chr14	46885811	46885868	46885867	-	RAMPAGE_only	238	332	528	16.762636	4.636837	chr14	46885639	46886113	LTR|ERVL|LTR40a	-	chr14	46873333	46882222	MDGA2|ENST00000557516.1	-	46873333,46874044,46882043	46873591,46874200,46882222	0.965909
SK_MEL_5_cytosolic_fraction	chr2	29223898	29223918	29223898	-	High_confidence	4	4	10	0.317474	2.721928	chr2	29223782	29224196	LTR|ERVL|LTR16B2	-	chr2	29192773	29223900	ALK|ENST00000642122.1	-	29192773,29196769,29197541,29207170,29209785,29213983,29220705,29222343,29222516,29223341	29193922,29196860,29197676,29207272,29209878,29214081,29220835,29222408,29222607,29223900	1.000000
SK_MEL_5_cytosolic_fraction	chr16	60745276	60745311	60745310	-	High_confidence	9	9	31	0.984170	4.607264	chr16	60745152	60745506	LTR|ERVL-MaLR|THE1A	-	chr16	60743449	60744423	MSTRG.11327.1	-	60743449	60744423	0.580645
SK_MEL_5_cytosolic_fraction	chr11	62126296	62126297	62126296	+	RAMPAGE_only	11	13	14	0.444464	3.546594	chr11	62126200	62126495	SINE|Alu|AluSx3	-	chr11	62124010	62137976	INCENP|ENST00000528037.1	+	62124010,62128150,62128769,62129781,62137831	62124163,62128301,62128883,62130590,62137976	0.928571
SK_MEL_5_cytosolic_fraction	chr8	18063185	18063216	18063197	-	High_confidence	12	12	45	1.428634	4.431257	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.933333
SK_MEL_5_cytosolic_fraction	chr2	181954484	181954524	181954491	+	High_confidence	13	13	73	2.317561	4.149478	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.890411
SK_MEL_5_cytosolic_fraction	chr6	151340892	151340915	151340914	+	High_confidence	3	3	10	0.317474	2.947703	chr6	151340774	151341033	LINE|L1|L1MC4	-	chr6	151341685	151356773	AKAP12|ENST00000359755.5	+	151341685,151348710,151355726	151341786,151353752,151356773	0.600000
SK_MEL_5_cytosolic_fraction	chr12	89461072	89461074	89461072	-	High_confidence	33	53	61	1.936592	5.231898	chr12	89461035	89461240	DNA|hAT-Charlie|MER30	-	chr12	89420786	89461842	POC1B|ENST00000546740.5	-	89420786,89425160,89461621	89421257,89425379,89461842	0.786885
SK_MEL_5_cytosolic_fraction	chr2	105329640	105329674	105329673	-	High_confidence	2	2	7	0.222232	2.521641	chr2	105329666	105329774	LTR|ERV1|LTR2752	-	chr2	105264389	105329714	TGFBRAP1|NM_001142621.2	-	105264389,105269271,105272854,105273543,105275559,105277613,105280381,105284315,105296355,105298510,105307613,105329624	105267559,105269705,105273014,105273690,105275703,105277671,105280723,105284398,105296510,105298705,105308315,105329714	1.000000
SK_MEL_5_cytosolic_fraction	chrX	69576336	69576337	69576336	-	RAMPAGE_only	5	5	8	0.253979	2.521641	chrX	69576194	69576532	LTR|ERVL-MaLR|THE1A	-	chrX	69569668	69570357	AL158069.1|ENST00000454131.1	-	69569668,69570250	69570016,69570357	0.875000
SK_MEL_5_cytosolic_fraction	chr8	79793769	79793796	79793795	-	RAMPAGE_only	4	7	16	0.507959	3.773557	chr8	79793613	79793843	DNA|TcMar-Tigger|Tigger7	+	chr8	79764009	79767863	HEY1|NM_001040708.1	-	79764009,79766650,79766996,79767218,79767574	79765771,79766732,79767092,79767294,79767863	0.500000
SK_MEL_5_cytosolic_fraction	chr17	60305228	60305262	60305244	-	RAMPAGE_only	17	17	107	3.396974	5.184800	chr17	60305106	60305535	LTR|ERVL-MaLR|MSTB	-	chr17	60249057	60391975	USP32|ENST00000393003.7	-	60249057,60252380,60255174,60265411,60265975,60269449,60271349,60288522,60294682,60301598,60345480,60391881	60249753,60252442,60255258,60265474,60266091,60269557,60271481,60288682,60294801,60301704,60345608,60391975	0.906542
SK_MEL_5_cytosolic_fraction	chr1	212234683	212234694	212234683	-	High_confidence	3	3	11	0.349222	3.459432	chr1	212234586	212234675	DNA|hAT-Charlie|Charlie24	-	chr1	212225277	212234736	LOC101929541|NR_125983.1	-	212225277,212230202,212234502	212225513,212230259,212234736	1.000000
SK_MEL_5_cytosolic_fraction	chr14	56515405	56515407	56515405	+	RAMPAGE_only	29	36	43	1.365139	4.869747	chr14	56515216	56515600	LTR|ERVL-MaLR|THE1C	+	chr14	56514330	56551309	LOC101927690|NR_135241.1	+	56514330,56549270	56514517,56551309	0.558140
SK_MEL_5_cytosolic_fraction	chr7	119713753	119713756	119713755	-	High_confidence	1840	2189	2754	87.432385	6.404024	chr7	119713581	119713935	LTR|ERVL-MaLR|THE1B	-	chr7	119484579	119713744	MSTRG.27110.1	-	119484579,119499973,119713665	119486040,119500109,119713744	0.822803
SK_MEL_5_cytosolic_fraction	chr6	2990742	2990755	2990748	-	RAMPAGE_only	8	9	24	0.761938	3.772055	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.916667
SK_MEL_5_cytosolic_fraction	chr2	113915406	113915443	113915406	+	RAMPAGE_only	11	13	29	0.920675	4.582119	chr2	113915130	113915539	LTR|ERVL-MaLR|MLT1B	-	chr2	113927368	113934640	ACTR3|ENST00000489779.1	+	113927368,113931300,113934278	113927455,113931396,113934640	0.689655
SK_MEL_5_cytosolic_fraction	chr10	69495121	69495126	69495121	+	High_confidence	5	5	12	0.380969	3.277613	chr10	69494989	69495143	SINE|MIR|MIR3	+	chr10	69495134	69506995	TSPAN15|ENST00000459981.1	+	69495134,69495593,69498279,69504437,69506123,69506828	69495423,69495689,69498396,69504485,69506240,69506995	0.916667
SK_MEL_5_cytosolic_fraction	chr11	73827932	73827933	73827932	+	RAMPAGE_only	8	9	9	0.285727	2.750000	chr11	73827872	73827981	SINE|MIR|MIRc	+	chr11	73842112	73864599	MRPL48|ENST00000314282.7	+	73842112,73844806,73859906,73863171,73864295	73843367,73844976,73860009,73863261,73864599	0.888889
SK_MEL_5_cytosolic_fraction	chr7	1571015	1571038	1571037	-	High_confidence	4	5	11	0.349222	3.121928	chr7	1570731	1571033	SINE|Alu|AluSx	-	chr7	1567612	1571005	PSMG3|ENST00000252329.3	-	1567612,1569123,1570473	1567850,1569360,1571005	0.818182
SK_MEL_5_cytosolic_fraction	chr15	69422823	69422859	69422830	+	High_confidence	5	6	30	0.952422	4.378783	chr15	69422804	69423097	SINE|Alu|AluSx	-	chr15	69422899	69447918	KIF23|ENST00000558585.5	+	69422899,69423158,69425281,69426069,69426335,69429110,69435482,69435651,69436137,69436563,69438247,69439903,69440307,69444789,69446008,69446282,69446870,69447791	69423034,69423329,69425323,69426182,69426457,69429213,69435562,69435771,69436261,69436722,69438405,69440077,69440487,69445041,69446091,69446364,69446941,69447918	0.900000
SK_MEL_5_cytosolic_fraction	chr1	159920334	159920346	159920334	-	RAMPAGE_only	2	2	7	0.222232	2.807355	chr1	159920065	159920288	LINE|CR1|L3b	-	chr1	159918106	159923717	TAGLN2|NM_001277224.1	-	159918106,159919273,159919660,159920329,159923435	159918941,159919376,159919835,159920537,159923717	1.000000
SK_MEL_5_cytosolic_fraction	chr2	86211698	86211726	86211715	+	RAMPAGE_only	6	6	21	0.666696	3.884184	chr2	86211671	86211797	SINE|Alu|AluJo	-	chr2	86199456	86213794	MRPL35|ENST00000337109.8	+	86199456,86206105,86207182,86210479	86199533,86206295,86207327,86213794	0.952381
SK_MEL_5_cytosolic_fraction	chr22	36482011	36482028	36482011	-	High_confidence	4	4	15	0.476211	3.093069	chr22	36481702	36481993	SINE|Alu|AluSc	-	chr22	36467035	36482030	TXN2|ENST00000216185.6	-	36467035,36476732,36480574,36481563	36467917,36476856,36480837,36482030	0.933333
SK_MEL_5_cytosolic_fraction	chr3	15341578	15341581	15341578	+	High_confidence	265	269	411	13.048188	5.782927	chr3	15341407	15341757	LTR|ERVL-MaLR|THE1D	+	chr3	15341593	15344192	MSTRG.20054.2	+	15341593,15343496	15341644,15344192	0.810219
SK_MEL_5_cytosolic_fraction	chr5	151669675	151669719	151669675	-	RAMPAGE_only	8	8	45	1.428634	4.758085	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	1.000000
SK_MEL_5_cytosolic_fraction	chr7	107580506	107580510	107580506	+	High_confidence	8	8	13	0.412716	3.418296	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.923077
SK_MEL_5_cytosolic_fraction	chr2	159087982	159087987	159087986	+	High_confidence	63	77	150	4.762112	6.095792	chr2	159087724	159088170	LTR|ERVL-MaLR|MLT1C	+	chr2	159087077	159091803	MSTRG.17263.1	+	159087077,159087891,159089583	159087103,159088093,159091803	0.800000
SK_MEL_5_cytosolic_fraction	chr1	112936000	112936022	112936021	-	High_confidence	5	5	14	0.444464	3.392747	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	0.928571
SK_MEL_5_cytosolic_fraction	chr7	99471746	99471779	99471765	-	RAMPAGE_only	5	5	22	0.698443	3.334209	chr7	99471609	99471877	SINE|Alu|AluSx1	+	chr7	99458194	99466331	ATP5MF|ENST00000292475.7	-	99458194,99459146,99460085,99466110	99458355,99459263,99460193,99466331	0.772727
SK_MEL_5_cytosolic_fraction	chr1	210439639	210439662	210439661	+	High_confidence	4	4	10	0.317474	2.641604	chr1	210439657	210440197	LTR|ERVL|ERVL-B4-int	-	chr1	210439582	210676296	HHAT|ENST00000367009.2	+	210439582,210464504,210513152,210587897,210623525,210674287	210439753,210464655,210513188,210588099,210623670,210676296	0.700000
SK_MEL_5_cytosolic_fraction	chr17	76564010	76564046	76564045	+	RAMPAGE_only	3	3	12	0.380969	3.251629	chr17	76563801	76564058	SINE|Alu|AluSc	-	chr17	76557791	76565279	SNHG16|ENST00000590435.5	+	76557791,76558944,76561287,76563118,76563972	76557857,76559043,76561398,76563482,76565279	0.916667
SK_MEL_5_cytosolic_fraction	chr7	87040212	87040223	87040222	-	RAMPAGE_only	18	19	56	1.777855	5.393595	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.571429
SK_MEL_5_cytosolic_fraction	chr4	39390617	39390651	39390650	-	RAMPAGE_only	48	54	191	6.063757	6.531661	chr4	39389788	39390686	LINE|L2|L2	+	chr4	39287448	39366381	RFC1|NM_001204747.1	-	39287448,39289847,39291638,39295613,39300020,39300259,39302277,39302499,39302736,39303059,39304813,39306591,39308635,39311444,39312751,39316914,39320382,39321286,39323339,39326562,39327523,39342344,39345400,39351347,39366238	39288844,39290039,39291852,39295759,39300138,39300414,39302376,39302595,39302874,39303151,39304928,39306704,39309032,39311549,39312931,39317022,39320669,39321374,39323417,39326640,39327756,39342467,39345476,39351476,39366381	0.581152
SK_MEL_5_cytosolic_fraction	chr3	33838228	33838261	33838246	+	RAMPAGE_only	3	3	10	0.317474	2.725481	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.900000
SK_MEL_5_cytosolic_fraction	chr1	236163623	236163669	236163668	+	High_confidence	247	271	419	13.302168	5.546428	chr1	236163473	236163830	LTR|ERVL-MaLR|THE1A	+	chr1	236163612	236221865	MSTRG.2839.5	+	236163612,236168705,236178413,236179878,236183777,236205125,236221790	236163754,236168755,236178636,236180028,236183906,236205250,236221865	0.940334
SK_MEL_5_cytosolic_fraction	chr1	168220654	168220663	168220662	-	High_confidence	4	4	11	0.349222	2.913977	chr1	168220433	168220794	LTR|ERVL-MaLR|THE1D	-	chr1	168207200	168220646	MSTRG.2197.1	-	168207200,168220514	168208717,168220646	1.000000
SK_MEL_5_cytosolic_fraction	chr14	27612576	27612577	27612576	+	High_confidence	42	42	54	1.714360	5.208410	chr14	27612284	27612881	LTR|ERVL|LTR66	+	chr14	27612587	27639636	LINC00645|ENST00000557359.5	+	27612587,27613420,27634243,27636419	27612677,27613496,27634344,27639636	0.888889
SK_MEL_5_cytosolic_fraction	chr1	167937075	167937076	167937075	+	High_confidence	7	8	11	0.349222	2.663533	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167937152	167993330	DCAF6|ENST00000455334.5	+	167937152,167951799,167966628,167974829,167987494,167991203,167993225	167937252,167951861,167966721,167975015,167987608,167991339,167993330	1.000000
SK_MEL_5_cytosolic_fraction	chr14	50314590	50314591	50314590	+	RAMPAGE_only	7	7	7	0.222232	2.807355	chr14	50314465	50314637	LINE|L1|L1MD2	-	chr14	50312640	50334907	ATP5S|ENST00000311459.11	+	50312640,50321482,50322510,50323944,50325608	50313060,50321594,50322719,50324116,50334907	1.000000
SK_MEL_5_cytosolic_fraction	chr5	83096128	83096153	83096128	+	RAMPAGE_only	3	3	8	0.253979	2.750000	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	1.000000
SK_MEL_5_cytosolic_fraction	chr4	122913311	122913318	122913317	-	High_confidence	126	161	240	7.619380	6.140221	chr4	122913129	122913485	LTR|ERVL-MaLR|MLT1A0	-	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	0.958333
SK_MEL_5_cytosolic_fraction	chr17	81893555	81893572	81893571	+	High_confidence	4	5	8	0.253979	2.521641	chr17	81893521	81893579	SINE|Alu|AluJb	-	chr17	81894297	81900991	ANAPC11|ENST00000575195.2	+	81894297,81899919	81894586,81900991	0.750000
SK_MEL_5_cytosolic_fraction	chr11	89179242	89179247	89179246	+	RAMPAGE_only	12	12	21	0.666696	4.142664	chr11	89179204	89179304	DNA|hAT-Charlie|MER5A	+	chr11	89177892	89295308	MSTRG.5318.4	+	89177892,89191201,89227822,89241253,89284772,89295142	89178772,89191418,89227970,89241306,89284954,89295308	0.857143
SK_MEL_5_cytosolic_fraction	chr20	61755072	61755157	61755072	-	High_confidence	61	67	194	6.158999	6.235583	chr20	61754915	61755267	LTR|ERVL-MaLR|THE1A	-	chr20	61748072	61755146	MSTRG.18701.3	-	61748072,61749435,61754991	61748160,61754200,61755146	0.917526
SK_MEL_5_cytosolic_fraction	chr1	239408143	239408187	239408186	+	High_confidence	5	7	30	0.952422	4.548394	chr1	239407991	239408310	LTR|ERVL-MaLR|THE1C	+	chr1	239408173	239555238	MSTRG.2881.3	+	239408173,239492708,239545640,239554750	239408249,239492807,239545749,239555238	0.700000
SK_MEL_5_cytosolic_fraction	chr8	47997432	47997454	47997447	+	High_confidence	14	14	54	1.714360	4.892534	chr8	47995253	47998768	LTR|ERV1|HERVFH21-int	-	chr8	47997453	48061315	MSTRG.28000.1	+	47997453,48043032,48049852,48060681	47997548,48043181,48049978,48061315	0.888889
SK_MEL_5_cytosolic_fraction	chr18	3857616	3857646	3857645	-	RAMPAGE_only	6	6	24	0.761938	4.501629	chr18	3857472	3857863	LINE|L2|L2c	+	chr18	3496031	3845359	DLGAP1|ENST00000400147.6	-	3496031,3502492,3508569,3534193,3567489,3581874,3729134,3742334,3814058,3845231	3499394,3502645,3508661,3534615,3567581,3582248,3729375,3742512,3814273,3845359	0.541667
SK_MEL_5_cytosolic_fraction	chr8	12796327	12796358	12796357	-	High_confidence	7	9	19	0.603201	3.826875	chr8	12796147	12797467	LTR|ERV1|LTR12C	+	chr8	12766051	12796446	MSTRG.27689.2	-	12766051,12767729,12778253,12788331,12796136	12766595,12767849,12778356,12788444,12796446	0.789474
SK_MEL_5_cytosolic_fraction	chr21	33945809	33945810	33945809	-	RAMPAGE_only	15	15	15	0.476211	3.240224	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
SK_MEL_5_cytosolic_fraction	chr6	136402821	136402822	136402821	-	RAMPAGE_only	6	6	9	0.285727	2.750000	chr6	136402625	136402935	SINE|Alu|AluYk3	+	chr6	136342280	136466875	MAP7|NM_001198615.1	-	136342280,136345855,136356691,136359819,136359980,136360696,136361004,136362449,136365734,136366326,136372500,136377754,136383670,136388392,136389353,136411619,136421700,136466760	136344238,136346079,136356794,136359877,136360031,136360798,136361179,136362702,136366018,136366439,136372625,136377868,136383781,136388510,136389517,136411697,136421799,136466875	0.888889
SK_MEL_5_cytosolic_fraction	chr2	70257706	70257707	70257706	+	High_confidence	6	6	6	0.190484	2.584963	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	1.000000
SK_MEL_5_cytosolic_fraction	chr3	139344535	139344548	139344547	+	High_confidence	765	765	1672	53.081680	5.989988	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.943780
SK_MEL_5_cytosolic_fraction	chr9	33068829	33068875	33068829	-	RAMPAGE_only	2	2	13	0.412716	2.918296	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.923077
SK_MEL_5_cytosolic_fraction	chr17	2975621	2975665	2975621	+	High_confidence	7	9	39	1.238149	5.037401	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975632	3037738	MSTRG.11916.6	+	2975632,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2975775,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037738	0.923077
SK_MEL_5_cytosolic_fraction	chr7	10956690	10956693	10956692	+	RAMPAGE_only	4	7	11	0.349222	3.321928	chr7	10956510	10956948	LTR|ERVL-MaLR|MLT1C	+	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.727273
SK_MEL_5_cytosolic_fraction	chr11	125874662	125874679	125874662	-	High_confidence	4	5	8	0.253979	3.000000	chr11	125874041	125875038	LTR|ERV1|HUERS-P3-int	+	chr11	125873448	125874528	AP000842.3|ENST00000569238.1	-	125873448	125874528	1.000000
SK_MEL_5_cytosolic_fraction	chr11	78469999	78470028	78469999	-	RAMPAGE_only	19	26	44	1.396886	3.829252	chr11	78469641	78470190	LINE|L2|L2a	-	chr11	78436188	78443759	NARS2|ENST00000529771.1	-	78436188,78443660	78436814,78443759	0.863636
SK_MEL_5_cytosolic_fraction	chr2	37366891	37366892	37366891	+	RAMPAGE_only	4	4	7	0.222232	2.584963	chr2	37366583	37366947	LTR|ERVL|LTR16A	-	chr2	37344609	37373322	QPCT|NM_012413.3	+	37344609,37352788,37359579,37367231,37369684,37372355,37372681	37344851,37352935,37359858,37367408,37369784,37372472,37373322	0.857143
SK_MEL_5_cytosolic_fraction	chr8	93003236	93003277	93003276	-	RAMPAGE_only	7	7	32	1.015917	4.750000	chr8	93003138	93003309	LTR|ERVL-MaLR|MSTA	-	chr8	92885319	93017673	TRIQK|ENST00000520686.5	-	92885319,92891988,92916928,92954405,93017608	92886735,92892074,92917010,92954564,93017673	0.781250
SK_MEL_5_cytosolic_fraction	chr14	56515445	56515452	56515445	+	RAMPAGE_only	3	3	8	0.253979	2.500000	chr14	56515216	56515600	LTR|ERVL-MaLR|THE1C	+	chr14	56519305	56633171	MSTRG.8487.2	+	56519305,56585000,56585760,56603814,56605569,56609105,56612244,56615943,56618593,56625381,56632994	56519379,56585032,56585912,56603992,56605683,56609285,56612285,56616027,56618763,56625530,56633171	0.625000
SK_MEL_5_cytosolic_fraction	chr1	19643265	19643284	19643265	+	High_confidence	1	1	7	0.222232	2.521641	chr1	19643078	19643273	LINE|L2|L2c	-	chr1	19643231	19657129	NBL1|ENST00000289749.6	+	19643231,19655011,19655323,19656865	19643397,19655200,19655435,19657129	1.000000
SK_MEL_5_cytosolic_fraction	chr1	153967484	153967512	153967511	+	High_confidence	22	22	105	3.333479	5.536885	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153974131	MSTRG.1945.1	+	153967533,153968521,153968929,153969333,153972743,153972971,153973194,153973379,153973619,153973871	153967884,153968699,153969176,153969455,153972836,153973078,153973263,153973464,153973716,153974131	0.904762
SK_MEL_5_cytosolic_fraction	chr18	8607995	8608049	8608041	+	RAMPAGE_only	4	4	22	0.698443	4.095795	chr18	8607829	8608179	SINE|Alu|AluJr	+	chr18	8609436	8639381	RAB12|ENST00000649141.1	+	8609436,8624937,8633188,8635532,8636252,8638148	8609953,8624998,8633327,8635622,8636357,8639381	1.000000
SK_MEL_5_cytosolic_fraction	chr11	46630080	46630081	46630080	-	RAMPAGE_only	6	6	6	0.190484	2.584963	chr11	46629971	46630118	SINE|Alu|AluJb	-	chr11	46616109	46617909	HARBI1|ENST00000532281.1	-	46616109,46617561	46616381,46617909	0.666667
SK_MEL_5_cytosolic_fraction	chr12	9567416	9567445	9567425	+	RAMPAGE_only	285	340	651	20.667568	4.412231	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9569102	9576268	MSTRG.5920.8	+	9569102,9570762,9571460,9573002,9573465,9574846,9575642	9569202,9570892,9571573,9573093,9573534,9574949,9576268	0.998464
SK_MEL_5_cytosolic_fraction	chr1	145724905	145724906	145724905	+	RAMPAGE_only	4	6	6	0.190484	2.584963	chr1	145724773	145725061	SINE|Alu|AluJo	-	chr1	145728243	145739288	CD160|ENST00000235933.10	+	145728243,145730743,145735996,145738485	145728400,145731070,145736134,145739288	1.000000
SK_MEL_5_cytosolic_fraction	chr11	7677221	7677311	7677246	-	High_confidence	47	82	256	8.127339	5.302445	chr11	7677065	7677444	LTR|ERVL-MaLR|THE1C	-	chr11	7657047	7677222	MSTRG.4297.1	-	7657047,7665323,7666450,7667727,7668477,7669204,7669624,7672450,7672747,7674225,7677147	7657172,7665546,7666550,7667813,7668561,7669334,7669731,7672523,7672891,7674493,7677222	0.988281
SK_MEL_5_cytosolic_fraction	chr12	40800227	40800231	40800227	+	High_confidence	63	64	116	3.682700	6.053876	chr12	40800036	40800412	LTR|ERVL-MaLR|THE1D	+	chr12	40800236	41072406	MSTRG.6206.9	+	40800236,40908356,40910072,40918638,40922255,40924556,40929795,40933460,40933696,40936780,40937569,40939334,40943596,40943994,40959113,40980908,40993119,41014227,41016681,41020336,41025149,41027856,41029062,41069958	40800330,40908493,40910105,40918771,40922428,40924652,40930002,40933560,40933878,40936905,40937687,40939485,40943724,40944170,40959234,40981067,40993269,41014298,41016916,41020440,41025336,41027969,41029219,41072406	0.905172
SK_MEL_5_cytosolic_fraction	chr12	10363662	10363664	10363662	+	High_confidence	7	11	13	0.412716	3.546594	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363714	10379767	MSTRG.5926.1	+	10363714,10370378,10373040,10374034,10379701	10364033,10370452,10373137,10374136,10379767	0.769231
SK_MEL_5_cytosolic_fraction	chr6	113873342	113873357	113873342	-	High_confidence	3	3	8	0.253979	2.521641	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.750000
SK_MEL_5_cytosolic_fraction	chr9	15852039	15852068	15852047	+	RAMPAGE_only	4	4	12	0.380969	2.845351	chr9	15851616	15856154	LINE|L1|L1MB5	-	chr9	15845638	15971897	CCDC171|ENST00000470191.5	+	15845638,15846701,15848892,15874531,15920269,15971608	15845701,15846847,15848947,15874663,15920422,15971897	0.666667
SK_MEL_5_cytosolic_fraction	chr7	22818346	22818376	22818359	-	High_confidence	1372	1375	3469	110.131788	5.352185	chr7	22818277	22818576	SINE|Alu|AluSz	-	chr7	22812970	22818335	TOMM7|ENST00000483581.1	-	22812970,22817999	22813185,22818335	0.986163
SK_MEL_5_cytosolic_fraction	chr6	142030417	142030446	142030425	-	High_confidence	16	17	97	3.079499	5.905441	chr6	142030076	142030610	LTR|ERVL|MLT2A2	-	chr6	141849267	142030455	MSTRG.25725.1	-	141849267,141850131,141900322,141909897,142030162	141849464,141850160,141900410,141910011,142030455	0.618557
SK_MEL_5_cytosolic_fraction	chr11	56848477	56848568	56848567	+	High_confidence	80	116	275	8.730540	5.773836	chr11	56848566	56849571	DNA|TcMar-Tigger|Tigger12	+	chr11	56848567	56878078	AP001803.2|ENST00000526436.1	+	56848567,56871090,56875596	56848615,56871251,56878078	0.658182
SK_MEL_5_cytosolic_fraction	chr18	35345328	35345358	35345357	-	High_confidence	4	4	10	0.317474	2.646439	chr18	35345344	35345538	LINE|L2|L2a	+	chr18	35340234	35345482	ZNF24|ENST00000590140.1	-	35340234,35344668,35345278	35340733,35344721,35345482	1.000000
SK_MEL_5_cytosolic_fraction	chr9	72874127	72874135	72874134	-	High_confidence	212	268	728	23.112119	6.360539	chr9	72873937	72874322	LTR|ERVL-MaLR|MSTA	-	chr9	72871727	72874109	LINC01474|NR_121120.1	-	72871727,72872108,72873026,72874015	72872020,72872231,72873155,72874109	0.989011
SK_MEL_5_cytosolic_fraction	chr6	56839178	56839181	56839178	-	RAMPAGE_only	18	19	32	1.015917	3.719903	chr6	56839131	56839380	LTR|ERVL-MaLR|MLT1J	+	chr6	56670487	56843146	DST|ENST00000521821.1	-	56670487,56699652,56701887,56704279,56735227,56843054	56670807,56699745,56701965,56704369,56735289,56843146	0.812500
SK_MEL_5_cytosolic_fraction	chr10	102449838	102449845	102449838	+	High_confidence	6	8	15	0.476211	3.521641	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.733333
SK_MEL_5_cytosolic_fraction	chr4	149943116	149943157	149943116	+	RAMPAGE_only	2	3	13	0.412716	3.022055	chr4	149942429	149943268	LTR|ERVL|MER21C	+	chr4	149956207	149958572	AC105343.1|ENST00000505586.1	+	149956207,149958280	149956273,149958572	0.923077
SK_MEL_5_cytosolic_fraction	chr4	123399314	123399320	123399314	+	High_confidence	3	3	8	0.253979	2.750000	chr4	123399094	123399386	SINE|Alu|AluSx	+	chr4	123399489	123403760	SPRY1|NM_005841.2	+	123399489,123401536	123399794,123403760	1.000000
SK_MEL_5_cytosolic_fraction	chr5	50799997	50800011	50799997	+	High_confidence	4	4	13	0.412716	3.418296	chr5	50799661	50800035	LTR|ERVL-MaLR|MLT1A0	+	chr5	50799836	50843374	MSTRG.23245.23	+	50799836,50815431,50821212,50822334,50824907,50826754,50827943,50828311,50829891,50832780,50833978,50834930,50841965	50799958,50815524,50821338,50822400,50824975,50826803,50828056,50828384,50829961,50832854,50834048,50835015,50843374	0.692308
SK_MEL_5_cytosolic_fraction	chr12	22822199	22822219	22822218	+	RAMPAGE_only	25	27	79	2.508046	5.774912	chr12	22821744	22822707	LTR|ERVL|ERVL-B4-int	+	chr12	22861068	22871078	AC084816.1|ENST00000629078.1	+	22861068,22869320,22870425	22861224,22869413,22871078	0.632911
SK_MEL_5_cytosolic_fraction	chr4	14945020	14945114	14945081	+	High_confidence	10	11	90	2.857267	4.888584	chr4	14944820	14945113	SINE|Alu|AluYa5	-	chr4	14944906	14952397	MSTRG.21856.1	+	14944906,14949045,14951673	14945176,14949791,14952397	0.922222
SK_MEL_5_cytosolic_fraction	chr9	20658387	20658427	20658426	+	High_confidence	5	5	11	0.349222	3.277613	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658311	20674036	MSTRG.28930.3	+	20658311,20673619	20658826,20674036	0.909091
SK_MEL_5_cytosolic_fraction	chr10	116906625	116906662	116906651	-	RAMPAGE_only	4	4	12	0.380969	3.418296	chr10	116906573	116906651	LINE|CR1|L3	+	chr10	116884796	116974170	SHTN1|ENST00000497044.5	-	116884796,116901764,116906626,116911789,116915374,116921433,116927791,116929848,116940465,116944923,116948915,116951908,116954041,116960135,116968651,116973855	116886566,116901957,116906747,116911843,116915484,116921516,116927891,116930002,116940612,116945018,116948997,116952006,116954210,116960230,116968712,116974170	0.583333
SK_MEL_5_cytosolic_fraction	chr12	53033951	53034028	53034027	+	RAMPAGE_only	7	7	74	2.349309	5.535476	chr12	53034069	53034237	DNA|hAT-Charlie|MER20B	+	chr12	53037725	53040352	EIF4B|ENST00000549592.1	+	53037725,53039629,53040142	53039343,53039702,53040352	0.581081
SK_MEL_5_cytosolic_fraction	chr5	70401423	70401512	70401444	+	High_confidence	16	27	197	6.254241	6.256119	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70401013	70447526	MSTRG.23395.1	+	70401013,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70401668,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.979695
SK_MEL_5_cytosolic_fraction	chr5	34918370	34918441	34918370	+	RAMPAGE_only	4	6	35	1.111160	4.631293	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	0.828571
SK_MEL_5_cytosolic_fraction	chr12	110126329	110126332	110126329	+	RAMPAGE_only	18	20	31	0.984170	4.696132	chr12	110126296	110126646	LINE|L2|L2c	-	chr12	110127472	110218786	IFT81|ENST00000550156.5	+	110127472,110128045,110128949,110132546,110134947,110135326,110136775,110143381,110146952,110162918,110180421,110190919,110192616,110203863,110205442,110205594,110209170,110216536,110216707,110218043	110127524,110128149,110129130,110132636,110135013,110135437,110136860,110143545,110147048,110163065,110180571,110191048,110192706,110203950,110205514,110205680,110209216,110216605,110216833,110218786	0.903226
SK_MEL_5_cytosolic_fraction	chr20	57601190	57601272	57601190	-	High_confidence	27	28	95	3.016005	5.696238	chr20	57600987	57601427	LINE|L2|L2b	+	chr20	57599694	57601200	AL035541.1|ENST00000424850.1	-	57599694,57600911	57600228,57601200	0.947368
SK_MEL_5_cytosolic_fraction	chrX	94600267	94600308	94600267	-	High_confidence	13	13	47	1.492129	4.876412	chrX	94599902	94600549	LTR|ERVL|LTR66	-	chrX	94569313	94600183	MSTRG.30532.1	-	94569313,94570782,94600106	94570146,94571148,94600183	0.680851
SK_MEL_5_cytosolic_fraction	chr11	78470059	78470062	78470061	-	RAMPAGE_only	14	25	36	1.142907	3.506750	chr11	78469641	78470190	LINE|L2|L2a	-	chr11	78436188	78443759	NARS2|ENST00000529771.1	-	78436188,78443660	78436814,78443759	0.944444
SK_MEL_5_cytosolic_fraction	chr10	133369953	133370029	133370014	-	RAMPAGE_only	3	3	19	0.603201	3.511085	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
SK_MEL_5_cytosolic_fraction	chr12	102313282	102313323	102313282	+	RAMPAGE_only	3	5	18	0.571453	3.969816	chr12	102307781	102313768	LINE|L1|L1PA2	-	chr12	102197584	102402596	HELLPAR|ENST00000626826.1	+	102197584	102402596	0.833333
SK_MEL_5_cytosolic_fraction	chr7	141737460	141737476	141737468	+	High_confidence	8	8	28	0.888928	4.458591	chr7	141736645	141737590	DNA|TcMar-Tigger|Tigger3b	+	chr7	141738320	141750461	SSBP1|ENST00000265304.10	+	141738320,141739123,141742168,141743560,141743901,141745495,141750310	141738410,141739190,141742229,141743701,141743989,141745584,141750461	0.964286
SK_MEL_5_cytosolic_fraction	chrX	15492635	15492640	15492635	-	High_confidence	13	15	23	0.730191	3.784942	chrX	15492554	15492724	SINE|MIR|MIR	+	chrX	15478415	15493288	PIR|ENST00000471725.1	-	15478415,15479728,15491161,15493189	15478589,15479821,15491309,15493288	0.565217
SK_MEL_5_cytosolic_fraction	chr17	40777960	40778050	40778046	-	High_confidence	33	40	149	4.730365	4.205693	chr17	40777904	40778097	LINE|RTE-BovB|MamRTE1	-	chr17	40776807	40778020	KRT27|ENST00000540723.1	-	40776807,40777252,40777514,40777849	40777138,40777302,40777732,40778020	0.986577
SK_MEL_5_cytosolic_fraction	chr20	6322042	6322043	6322042	+	RAMPAGE_only	12	12	18	0.571453	3.572469	chr20	6321937	6322242	SINE|Alu|AluY	-	chr20	6426731	6528459	CASC20|NR_109953.1	+	6426731,6446722,6473538,6527193	6426810,6446823,6473655,6528459	0.555556
SK_MEL_5_cytosolic_fraction	chr12	89461216	89461244	89461216	-	High_confidence	3	3	9	0.285727	2.500000	chr12	89461035	89461240	DNA|hAT-Charlie|MER30	-	chr12	89420786	89461842	POC1B|ENST00000546740.5	-	89420786,89425160,89461621	89421257,89425379,89461842	0.666667
SK_MEL_5_cytosolic_fraction	chrX	115018032	115018042	115018032	-	High_confidence	5	5	15	0.476211	3.182006	chrX	115017783	115018061	SINE|Alu|AluSx1	+	chrX	115003974	115017644	IL13RA2|NM_000640.2	-	115003974,115005196,115007931,115009520,115010643,115013768,115014420,115015669,115017175,115017552	115004106,115005315,115008076,115009666,115010828,115013889,115014574,115015821,115017302,115017644	0.533333
SK_MEL_5_cytosolic_fraction	chr12	10363964	10363974	10363964	+	High_confidence	12	12	21	0.666696	3.884184	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.952381
SK_MEL_5_cytosolic_fraction	chr13	60410037	60410048	60410047	+	High_confidence	4	4	8	0.253979	2.807355	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60409985	60573872	MSTRG.7800.9	+	60409985,60439687,60444682,60460379,60467237,60468350,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573612	60410164,60439772,60444748,60460540,60467379,60468403,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573872	0.875000
SK_MEL_5_cytosolic_fraction	chr7	46758476	46758502	46758476	-	High_confidence	11	11	40	1.269897	4.817078	chr7	46758349	46758453	SINE|MIR|MIR1_Amn	-	chr7	46687878	46758470	MSTRG.26438.2	-	46687878,46692810,46758369	46689546,46692969,46758470	0.900000
SK_MEL_5_cytosolic_fraction	chr5	104079977	104079997	104079996	+	High_confidence	5	6	11	0.349222	3.121928	chr5	104074362	104080381	LINE|L1|L1PA2	-	chr5	104079910	104105403	LINC02163|ENST00000514769.1	+	104079910,104080907,104081879,104104173,104105359	104080124,104081041,104081947,104104287,104105403	0.545455
SK_MEL_5_cytosolic_fraction	chr6	57961642	57961650	57961647	+	High_confidence	15	15	35	1.111160	4.839701	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961437	57973690	AL445250.1|ENST00000641671.1	+	57961437,57962180,57965516,57971594,57972093	57961742,57962248,57965743,57971656,57973690	0.885714
SK_MEL_5_cytosolic_fraction	chrX	135888859	135888885	135888884	-	High_confidence	4	5	10	0.317474	2.947703	chrX	135888787	135889145	LTR|ERVL|LTR41	-	chrX	135880751	135888993	CT45A10|NM_001291527.1	-	135880751,135882535,135883007,135885175,135888830	135881315,135882629,135883256,135885350,135888993	0.900000
SK_MEL_5_cytosolic_fraction	chr13	101959108	101959168	101959108	-	RAMPAGE_only	99	123	409	12.984693	6.541092	chr13	101959062	101959301	DNA|hAT-Charlie|MER1B	-	chr13	101720854	101916645	FGF14|NM_004115.3	-	101720854,101726611,101868724,101875185,101916452	101722967,101726810,101868828,101875296,101916645	0.955990
SK_MEL_5_cytosolic_fraction	chr3	191425492	191425528	191425527	+	High_confidence	41	54	85	2.698530	5.633765	chr3	191425335	191425687	LTR|ERVL-MaLR|THE1B	+	chr3	191425527	191591097	AC073365.1|ENST00000641055.1	+	191425527,191473550,191557261,191559677,191569599,191573313,191589902	191425604,191473688,191557384,191559750,191569824,191573474,191591097	0.658824
SK_MEL_5_cytosolic_fraction	chr16	75305475	75305508	75305493	-	High_confidence	3	4	10	0.317474	2.921928	chr16	75305482	75305675	SINE|MIR|MIR	+	chr16	75293907	75305438	CFDP1|ENST00000562602.1	-	75293907,75301756,75305023	75294042,75301905,75305438	0.800000
SK_MEL_5_cytosolic_fraction	chr15	45441877	45441889	45441877	-	High_confidence	8	9	19	0.603201	3.149673	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45430651	45441808	AC025580.1|ENST00000559553.1	-	45430651,45433612,45441780	45430814,45434150,45441808	0.842105
SK_MEL_5_cytosolic_fraction	chr1	168137432	168137437	168137432	-	High_confidence	3	3	7	0.222232	2.584963	chr1	168137391	168137473	LINE|L2|L2b	-	chr1	168079541	168137573	GPR161|NM_001267611.1	-	168079541,168087584,168090563,168096507,168104476,168137389	168085796,168087704,168090668,168097232,168104894,168137573	0.571429
SK_MEL_5_cytosolic_fraction	chr6	13319121	13319138	13319121	-	RAMPAGE_only	2	2	7	0.222232	2.521641	chr6	13318892	13319177	LINE|L1|L1MC4a	+	chr6	13307713	13320981	TBC1D7|ENST00000607208.1	-	13307713,13316570,13318097,13320907	13307745,13316708,13318193,13320981	0.571429
SK_MEL_5_cytosolic_fraction	chr14	81166243	81166254	81166251	-	RAMPAGE_only	18	19	60	1.904845	4.930836	chr14	81166191	81166439	LTR|ERVL-MaLR|MLT1J2	+	chr14	81012098	81170224	AC007262.2|ENST00000646052.1	-	81012098,81053682,81087466,81093581,81094214,81099398,81165192,81170108	81014404,81053816,81087652,81093737,81094324,81099526,81165381,81170224	0.816667
SK_MEL_5_cytosolic_fraction	chr1	6208681	6208682	6208681	-	High_confidence	75	75	75	2.381056	3.624481	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.960000
SK_MEL_5_cytosolic_fraction	chr5	75512945	75512946	75512945	+	High_confidence	4	4	6	0.190484	2.584963	chr5	75512845	75513016	SINE|Alu|AluSx1	+	chr5	75512068	75573837	POLK|ENST00000514296.5	+	75512068,75534827,75547009,75552471,75569339,75573737	75512946,75534964,75547157,75552591,75569492,75573837	1.000000
SK_MEL_5_cytosolic_fraction	chr2	222864479	222864484	222864479	+	RAMPAGE_only	5	5	9	0.285727	2.947703	chr2	222864070	222864662	LINE|L2|L2	-	chr2	222861562	222909036	ACSL3|ENST00000413316.1	+	222861562,222887829,222900673,222908732	222861742,222887888,222900780,222909036	0.666667
SK_MEL_5_cytosolic_fraction	chr2	43552898	43553083	43553065	-	RAMPAGE_only	19	19	158	5.016092	5.946705	chr2	43552671	43553265	LINE|L1|L1MB8	-	chr2	43230850	43570515	THADA|ENST00000407351.5	-	43230850,43232712,43279764,43286907,43291695,43292103,43292833,43320445,43344121,43397970,43485233,43498832,43505621,43508647,43527878,43541158,43549209,43551788,43552203,43556344,43560233,43566697,43570387	43231343,43232882,43279896,43287061,43291768,43292222,43293213,43320540,43344237,43398139,43485325,43498955,43505735,43508780,43527988,43541316,43549368,43551925,43552339,43556555,43560385,43566821,43570515	0.500000
SK_MEL_5_cytosolic_fraction	chr12	23133728	23133729	23133728	+	RAMPAGE_only	7	7	8	0.253979	2.521641	chr12	23133532	23133902	LTR|ERVL-MaLR|THE1B	+	chr12	23054236	23174125	AC084816.1|ENST00000625240.1	+	23054236,23057165,23057779,23167038,23173388	23054323,23057297,23057897,23167078,23174125	0.625000
SK_MEL_5_cytosolic_fraction	chr4	131379753	131379793	131379753	+	High_confidence	48	52	140	4.444638	5.808914	chr4	131379190	131380342	LTR|ERV1|LTR12D	+	chr4	131380012	131528121	LINC02377|ENST00000500169.6	+	131380012,131527229,131528059	131380341,131527288,131528121	0.857143
SK_MEL_5_cytosolic_fraction	chr17	41871713	41871755	41871736	-	RAMPAGE_only	3	3	17	0.539706	4.000000	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41866916	41918962	ACLY|ENST00000590151.5	-	41866916,41868708,41869042,41869473,41871688,41872031,41873810,41878102,41878796,41883121,41884192,41886111,41887598,41892278,41893032,41896619,41897748,41898630,41901695,41904728,41905521,41906527,41907441,41908988,41909509,41910221,41912419,41913714,41918879	41867904,41868785,41869125,41869587,41871832,41872182,41873965,41878196,41878924,41883232,41884274,41886308,41887703,41892447,41893174,41896649,41897839,41898785,41901813,41904790,41905658,41906646,41907572,41909068,41909700,41910284,41912542,41913900,41918962	0.941176
SK_MEL_5_cytosolic_fraction	chr3	177628385	177628420	177628419	-	High_confidence	9	9	28	0.888928	4.100069	chr3	177628122	177628491	LTR|ERVL-MaLR|THE1B	-	chr3	177621381	177628287	AC026355.2|ENST00000456755.1	-	177621381,177622626,177628205	177621945,177622703,177628287	0.535714
SK_MEL_5_cytosolic_fraction	chr6	10521614	10521615	10521614	-	High_confidence	5	6	8	0.253979	2.521641	chr6	10521558	10521623	LINE|L2|L2a	+	chr6	10509092	10521215	MSTRG.24543.1	-	10509092,10510342,10521066	10509303,10510640,10521215	0.750000
SK_MEL_5_cytosolic_fraction	chr5	12574613	12574671	12574648	-	High_confidence	18	20	126	4.000174	5.975074	chr5	12573943	12575033	LTR|ERV1|LTR12C	-	chr5	12562341	12574637	MSTRG.23002.3	-	12562341,12571815,12574503	12567227,12571904,12574637	0.841270
SK_MEL_5_cytosolic_fraction	chr16	11587527	11587530	11587529	-	High_confidence	5	8	11	0.349222	3.121928	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587563	LITAF|ENST00000571688.5	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587563	0.909091
SK_MEL_5_cytosolic_fraction	chr5	43068831	43068838	43068831	-	RAMPAGE_only	4	4	9	0.285727	2.947703	chr5	43068751	43069106	LTR|ERVL-MaLR|THE1D	+	chr5	43014728	43067439	LOC648987|NR_104651.1	-	43014728,43067086,43067297	43015150,43067157,43067439	1.000000
SK_MEL_5_cytosolic_fraction	chr3	191659249	191659283	191659282	+	RAMPAGE_only	25	31	124	3.936680	5.384670	chr3	191659314	191661687	LTR|ERV1|HERV17-int	+	chr3	191673470	191785032	MSTRG.21593.1	+	191673470,191712452,191726221,191777242,191779399,191784104	191673513,191712607,191726267,191777339,191779481,191785032	0.750000
SK_MEL_5_cytosolic_fraction	chrX	115209434	115209457	115209434	+	High_confidence	24	24	60	1.904845	4.512048	chrX	115209252	115209596	LTR|ERVL-MaLR|THE1B	+	chrX	115209442	115307485	MSTRG.30682.1	+	115209442,115301991,115303299,115306204	115209513,115302123,115303418,115307485	0.950000
SK_MEL_5_cytosolic_fraction	chr5	75336495	75336567	75336514	+	High_confidence	6	6	38	1.206402	4.574054	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.894737
SK_MEL_5_cytosolic_fraction	chr14	35135123	35135157	35135156	+	RAMPAGE_only	3	4	13	0.412716	3.392747	chr14	35134389	35135381	LINE|L1|L1M1	-	chr14	35122758	35273485	KIAA0391|ENST00000557404.3	+	35122758,35127478,35180669,35266726,35270400,35273434	35122910,35127611,35180777,35266875,35270596,35273485	0.923077
SK_MEL_5_cytosolic_fraction	chr4	89493183	89493205	89493204	+	RAMPAGE_only	3	5	11	0.349222	3.277613	chr4	89493041	89493615	LTR|ERV1|MER41C	-	chr4	89627783	89720172	AC097478.1|ENST00000507916.6	+	89627783,89691284,89719825	89627917,89691405,89720172	0.636364
SK_MEL_5_cytosolic_fraction	chr7	28598242	28598243	28598242	+	RAMPAGE_only	7	8	10	0.317474	2.503258	chr7	28598047	28598393	LTR|ERVL-MaLR|THE1A	+	chr7	28609060	28809317	CREB5|ENST00000426500.5	+	28609060,28718752,28724221,28804198,28809186	28609120,28718879,28724332,28804522,28809317	0.900000
SK_MEL_5_cytosolic_fraction	chr7	27652687	27652761	27652760	-	RAMPAGE_only	8	10	44	1.396886	4.408255	chr7	27652537	27652846	LTR|ERVL-MaLR|MLT1A0	-	chr7	27531253	27647756	HIBADH|ENST00000425715.1	-	27531253,27538340,27542966,27629370,27632335,27647672	27531348,27538417,27543100,27629492,27632441,27647756	0.840909
SK_MEL_5_cytosolic_fraction	chr2	188314904	188314920	188314919	+	RAMPAGE_only	4	4	18	0.571453	3.947703	chr2	188314687	188315446	DNA|TcMar-Tigger|MER44C	+	chr2	188293817	188594281	GULP1|ENST00000409609.5	+	188293817,188383762,188477658,188483430,188522755,188529096,188541180,188569238,188570027,188584264,188587854,188593939	188294393,188383889,188477730,188483492,188522827,188529195,188541318,188569355,188570120,188584403,188587949,188594281	0.888889
SK_MEL_5_cytosolic_fraction	chr14	75133842	75133886	75133885	-	RAMPAGE_only	4	5	17	0.539706	3.852169	chr14	75133229	75134244	LINE|L1|L1ME1	+	chr14	75131469	75176631	TMED10|ENST00000303575.8	-	75131469,75135759,75147663,75152031,75176354	75135006,75135886,75147737,75152143,75176631	1.000000
SK_MEL_5_cytosolic_fraction	chr4	62439193	62439214	62439193	-	High_confidence	11	13	27	0.857180	4.606739	chr4	62439054	62439409	LTR|ERVL-MaLR|THE1A	-	chr4	62437567	62439200	MSTRG.22141.1	-	62437567,62439130	62438472,62439200	0.777778
SK_MEL_5_cytosolic_fraction	chr10	24944966	24944988	24944966	-	RAMPAGE_only	3	3	8	0.253979	2.521641	chr10	24944807	24945301	LINE|L2|L2b	+	chr10	24849706	24952584	PRTFDC1|ENST00000376378.5	-	24849706,24855317,24856912,24858391,24871997,24937183,24942329,24952527	24849891,24855364,24856995,24858409,24872063,24937367,24942436,24952584	0.500000
SK_MEL_5_cytosolic_fraction	chr2	75872402	75872430	75872402	+	High_confidence	12	12	42	1.333391	5.016089	chr2	75871689	75872461	LTR|ERV1|LTR17	+	chr2	75871941	75880231	MSTRG.16698.1	+	75871941,75879069	75872492,75880231	0.666667
SK_MEL_5_cytosolic_fraction	chr5	19804023	19804024	19804023	-	High_confidence	4	4	6	0.190484	2.584963	chr5	19803839	19804143	SINE|Alu|AluYm1	+	chr5	19721390	19804028	CDH18|ENST00000508350.1	-	19721390,19746941,19803821	19721466,19747236,19804028	0.833333
SK_MEL_5_cytosolic_fraction	chr1	30815559	30815562	30815561	-	High_confidence	10	12	17	0.539706	3.969816	chr1	30815478	30815706	SINE|MIR|MIRb	+	chr1	30810377	30815553	AL137027.1|ENST00000440358.1	-	30810377,30815446	30810714,30815553	0.823529
SK_MEL_5_cytosolic_fraction	chr5	86604357	86604362	86604357	-	RAMPAGE_only	4	4	11	0.349222	3.121928	chr5	86604178	86604552	LTR|ERVL-MaLR|THE1C	-	chr5	86562570	86570476	MSTRG.23550.1	-	86562570,86570416	86562722,86570476	0.545455
SK_MEL_5_cytosolic_fraction	chr17	59834048	59834049	59834048	+	RAMPAGE_only	20	29	29	0.920675	3.190886	chr17	59833955	59834256	SINE|Alu|AluSq2	-	chr17	59837627	59840223	VMP1|ENST00000591782.1	+	59837627,59838294,59839767	59837797,59838397,59840223	0.758621
SK_MEL_5_cytosolic_fraction	chr10	28896166	28896167	28896166	-	High_confidence	310	312	317	10.063931	5.000927	chr10	28895749	28897341	LTR|ERV1|LTR12C	-	chr10	28880563	28896154	MSTRG.3179.1	-	28880563,28895617	28880837,28896154	0.962145
SK_MEL_5_cytosolic_fraction	chr6	3083273	3083281	3083280	+	RAMPAGE_only	4	4	11	0.349222	3.121928	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.909091
SK_MEL_5_cytosolic_fraction	chr7	136092891	136092941	136092924	+	High_confidence	132	144	247	7.841612	6.921127	chr7	136092728	136093088	LTR|ERVL-MaLR|THE1A	+	chr7	136092924	136437163	AC078845.1|ENST00000445293.6	+	136092924,136117070,136177251,136242149,136328981,136405269,136437051	136093036,136117188,136177413,136242371,136329097,136405316,136437163	0.591093
SK_MEL_5_cytosolic_fraction	chr13	98180421	98180422	98180421	+	RAMPAGE_only	35	35	42	1.333391	3.883581	chr13	98180072	98180468	LTR|ERVL-MaLR|MSTB	-	chr13	98177816	98384844	FARP1|ENST00000598389.5	+	98177816,98213219,98343761,98365394,98368116,98377820,98384729	98177929,98213413,98343866,98365437,98368195,98377918,98384844	0.904762
SK_MEL_5_cytosolic_fraction	chr12	9400826	9400867	9400826	-	RAMPAGE_only	2	2	13	0.412716	3.026987	chr12	9400823	9401135	SINE|Alu|AluSz6	+	chr12	9397056	9401864	MSTRG.5913.5	-	9397056,9397614,9398381,9399794,9400235,9401746	9397214,9397689,9398442,9400015,9400326,9401864	0.923077
SK_MEL_5_cytosolic_fraction	chr8	93794804	93794824	93794823	+	High_confidence	14	22	52	1.650866	4.983465	chr8	93794713	93794824	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.961538
SK_MEL_5_cytosolic_fraction	chr10	84279967	84279968	84279967	+	High_confidence	73	79	89	2.825520	5.126620	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279979	84294659	LINC00858|ENST00000415469.5	+	84279979,84288223,84288593,84288974,84291406,84293245	84280065,84288420,84288780,84289044,84292137,84294659	0.528090
SK_MEL_5_cytosolic_fraction	chrX	23782622	23782665	23782646	-	High_confidence	9	9	35	1.111160	4.479143	chrX	23782563	23782777	DNA|hAT-Charlie|Charlie1	-	chrX	23772991	23782956	AC131011.1|ENST00000366134.2	-	23772991,23782567,23782884	23773510,23782648,23782956	0.571429
SK_MEL_5_cytosolic_fraction	chr19	49086520	49086547	49086546	+	High_confidence	4	4	10	0.317474	3.321928	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.600000
SK_MEL_5_cytosolic_fraction	chr16	30623968	30623969	30623968	-	High_confidence	429	440	446	14.159348	7.275528	chr16	30623844	30624281	LTR|ERVK|LTR3B_	-	chr16	30602557	30623948	MSTRG.11066.1	-	30602557,30609524,30609836,30623739	30605447,30609638,30610782,30623948	0.901345
SK_MEL_5_cytosolic_fraction	chr9	5894775	5894800	5894799	+	RAMPAGE_only	4	4	10	0.317474	3.169925	chr9	5894274	5894902	LTR|ERVL|LTR50	-	chr9	5890921	5908945	MLANA|ENST00000381471.1	+	5890921,5892449,5897556,5906884,5908639	5891302,5892551,5897653,5906998,5908945	0.900000
SK_MEL_5_cytosolic_fraction	chr16	17403530	17403534	17403530	-	High_confidence	13	20	26	0.825433	4.563856	chr16	17403361	17403728	LTR|ERVL-MaLR|THE1B	-	chr16	17354671	17403501	XYLT1|ENST00000568226.5	-	17354671,17358011,17403445	17355415,17358050,17403501	0.500000
SK_MEL_5_cytosolic_fraction	chr9	109002239	109002246	109002243	-	High_confidence	161	164	426	13.524399	7.138483	chr9	109002078	109002410	LTR|ERVL-MaLR|MLT1A0	-	chr9	108942570	109002258	MSTRG.29489.2	-	108942570,108942960,108943702,108943961,108948185,108952208,108952443,108955789,108965377,108970401,108972674,108976961,108979280,108983144,108984346,108990725,108992631,108999066,109002152	108942834,108943044,108943816,108944018,108948234,108952363,108952494,108955827,108965528,108970494,108972833,108977048,108979481,108983315,108984436,108990845,108992819,108999256,109002258	0.946009
SK_MEL_5_cytosolic_fraction	chr12	53251243	53251270	53251243	+	High_confidence	12	13	89	2.825520	5.772035	chr12	53251157	53251415	LINE|L2|L2a	-	chr12	53251250	53253752	MSTRG.6406.1	+	53251250,53251704,53252817	53251624,53252035,53253752	0.955056
SK_MEL_5_cytosolic_fraction	chr3	67509867	67509889	67509888	-	RAMPAGE_only	3	3	7	0.222232	2.521641	chr3	67509802	67510257	LTR|ERVL|LTR33A_	+	chr3	67408605	67654607	SUCLG2|ENST00000492795.1	-	67408605,67495797,67498133,67508806,67518246,67520481,67528131,67529086,67609454,67654502	67409034,67495940,67498295,67508903,67518336,67520634,67528222,67529186,67609596,67654607	0.571429
SK_MEL_5_cytosolic_fraction	chr2	6918647	6918680	6918663	-	High_confidence	12	12	74	2.349309	5.533439	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6916850	6918663	RNF144A-AS1|ENST00000439208.1	-	6916850,6918280	6917224,6918663	0.824324
SK_MEL_5_cytosolic_fraction	chrX	98573830	98573850	98573833	+	High_confidence	10	16	82	2.603288	5.680604	chrX	98573437	98574092	LTR|ERV1|LTR49	+	chrX	98573858	98865564	AL157778.1|ENST00000626665.3	+	98573858,98578985,98644527,98731530,98785026,98864610	98573932,98579074,98644574,98731577,98785124,98865564	0.621951
SK_MEL_5_cytosolic_fraction	chr4	186074243	186074285	186074284	+	RAMPAGE_only	6	8	32	1.015917	4.206239	chr4	186074192	186075298	DNA|TcMar-Tigger|Tigger3b	-	chr4	186069154	186085098	TLR3|NM_003265.2	+	186069154,186076612,186078839,186082319,186084644	186069248,186077060,186079031,186084172,186085098	0.937500
SK_MEL_5_cytosolic_fraction	chr5	114433510	114433511	114433510	+	High_confidence	32	32	32	1.015917	4.324699	chr5	114432499	114433929	LTR|ERV1|LTR12C	+	chr5	114433529	114496500	KCNN2|NR_103458.1	+	114433529,114463048,114473053,114486697,114487049,114493402,114495894	114433929,114463190,114473164,114486803,114487177,114493472,114496500	0.968750
SK_MEL_5_cytosolic_fraction	chr5	12574832	12574857	12574842	+	High_confidence	259	260	1170	37.144477	5.843892	chr5	12573943	12575033	LTR|ERV1|LTR12C	-	chr5	12574856	12655687	LINC01194|ENST00000505877.5	+	12574856,12595696,12654646	12575052,12595778,12655687	0.804274
SK_MEL_5_cytosolic_fraction	chr2	191323151	191323162	191323154	+	RAMPAGE_only	19	27	63	2.000087	5.414184	chr2	191322769	191323409	LTR|ERV1|MER41B	-	chr2	191276884	191425389	MYO1B|ENST00000392316.5	+	191276884,191296110,191329934,191341460,191346235,191350161,191360630,191362267,191363727,191364157,191369541,191370226,191381461,191383279,191385883,191387223,191390291,191392107,191393072,191396428,191400381,191402631,191408114,191409043,191411065,191414047,191414516,191416114,191423836	191277030,191296226,191330029,191341565,191346282,191350225,191360729,191362371,191363875,191364276,191369628,191370292,191381566,191383342,191386084,191387450,191390492,191392201,191393222,191396497,191400468,191402718,191408189,191409178,191411172,191414180,191414669,191416242,191425389	0.920635
SK_MEL_5_cytosolic_fraction	chrX	115017939	115017980	115017979	-	High_confidence	3	3	10	0.317474	3.121928	chrX	115017783	115018061	SINE|Alu|AluSx1	+	chrX	115003974	115017644	IL13RA2|NM_000640.2	-	115003974,115005196,115007931,115009520,115010643,115013768,115014420,115015669,115017175,115017552	115004106,115005315,115008076,115009666,115010828,115013889,115014574,115015821,115017302,115017644	0.800000
SK_MEL_5_cytosolic_fraction	chr16	21611733	21611779	21611778	+	High_confidence	8	8	24	0.761938	4.303509	chr16	21611579	21611827	SINE|MIR|MIRb	-	chr16	21612099	21625115	METTL9|ENST00000562961.1	+	21612099,21612644,21617864,21624930	21612298,21612835,21618074,21625115	0.875000
SK_MEL_5_cytosolic_fraction	chr4	22339677	22339681	22339677	-	High_confidence	62	65	92	2.920762	5.976692	chr4	22339382	22339971	LTR|ERVL|LTR66	-	chr4	22324773	22339679	MSTRG.21906.1	-	22324773,22329856,22335040,22339579	22327889,22330004,22335167,22339679	0.793478
SK_MEL_5_cytosolic_fraction	chr1	51297974	51297998	51297975	-	High_confidence	6	11	31	0.984170	4.542748	chr1	51297625	51298239	LINE|L2|L2a	+	chr1	51287257	51297961	TTC39A|NM_001297666.1	-	51287257,51288838,51290004,51290513,51294390,51296078,51297790	51288280,51288955,51290119,51290625,51294511,51296170,51297961	1.000000
SK_MEL_5_cytosolic_fraction	chr16	11782569	11782589	11782569	-	High_confidence	9	9	17	0.539706	3.750000	chr16	11782466	11782586	LINE|L2|L2c	+	chr16	11750585	11782552	ZC3H7A|ENST00000396516.6	-	11750585,11752668,11756236,11758430,11761405,11761909,11762670,11763477,11765052,11765488,11767416,11768314,11769030,11770782,11774235,11774979,11776319,11776451,11776750,11779165,11781424,11782286	11751506,11752832,11756370,11758539,11761511,11762043,11762747,11763659,11765153,11765685,11767578,11768501,11769095,11770987,11774519,11775013,11776358,11776532,11776909,11779363,11781464,11782552	0.941176
SK_MEL_5_cytosolic_fraction	chr1	94271061	94271078	94271074	-	RAMPAGE_only	9	11	18	0.571453	3.616875	chr1	94270887	94271439	LTR|ERVL-MaLR|MLT1F2	-	chr1	94149846	94275068	ARHGAP29|ENST00000552844.5	-	94149846,94150351,94154550,94174603,94177611,94177851,94179724,94184150,94184871,94185341,94186498,94188836,94189215,94189925,94201719,94202543,94202917,94203099,94203929,94205060,94205634,94208831,94209253,94220257,94231406,94275011	94149883,94150515,94154648,94174749,94177720,94178167,94179957,94184288,94185060,94185481,94186597,94188941,94189352,94190083,94201857,94202732,94202998,94203210,94203994,94205198,94205683,94208904,94209350,94220392,94231643,94275068	0.944444
SK_MEL_5_cytosolic_fraction	chrX	55164156	55164178	55164173	-	RAMPAGE_only	6	7	22	0.698443	4.277613	chrX	55164086	55164236	LTR|ERVL-MaLR|MSTA	-	chrX	55143101	55161310	FAM104B|ENST00000358460.8	-	55143101,55146180,55159128,55161136	55143875,55146311,55159228,55161310	0.590909
SK_MEL_5_cytosolic_fraction	chr11	74070871	74070902	74070873	-	High_confidence	8	13	42	1.333391	4.975418	chr11	74070756	74071175	LINE|L2|L2c	+	chr11	74049518	74070869	C2CD3|ENST00000542484.1	-	74049518,74054606,74057405,74070505	74049542,74054671,74057544,74070869	0.976190
SK_MEL_5_cytosolic_fraction	chr1	11058820	11058830	11058829	-	RAMPAGE_only	3	3	8	0.253979	2.500000	chr1	11058682	11058785	SINE|MIR|MIRc	-	chr1	11054588	11060024	SRM|ENST00000376957.6	-	11054588,11054961,11055780,11056010,11056603,11058799,11059224,11059776	11054885,11055084,11055926,11056094,11056757,11058892,11059345,11060024	1.000000
SK_MEL_5_cytosolic_fraction	chr5	43580725	43580738	43580725	-	RAMPAGE_only	4	6	19	0.603201	3.721612	chr5	43580447	43581389	LTR|ERVK|LTR5_Hs	+	chr5	43571593	43603104	NNT-AS1|ENST00000513560.6	-	43571593,43583466,43602777	43575935,43583566,43603104	0.947368
SK_MEL_5_cytosolic_fraction	chr22	39021125	39021156	39021146	+	High_confidence	17	19	84	2.666783	5.580875	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.916667
SK_MEL_5_cytosolic_fraction	chr4	102431179	102431180	102431179	-	High_confidence	7	8	10	0.317474	2.641604	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.900000
SK_MEL_5_cytosolic_fraction	chr19	48589080	48589144	48589122	+	RAMPAGE_only	3	3	19	0.603201	3.725481	chr19	48588603	48589545	LINE|L2|L2a	-	chr19	48595785	48599423	SULT2B1|ENST00000597923.1	+	48595785,48599134	48596919,48599423	0.789474
SK_MEL_5_cytosolic_fraction	chr12	37489504	37489508	37489507	+	High_confidence	8	11	14	0.444464	3.238901	chr12	37489351	37489691	LTR|ERVL-MaLR|THE1D	+	chr12	37489521	37525326	MSTRG.6183.1	+	37489521,37489906,37512472,37519620,37521542	37489609,37490003,37512597,37519755,37525326	0.857143
SK_MEL_5_cytosolic_fraction	chr3	62950429	62950430	62950429	+	High_confidence	223	246	313	9.936941	6.734919	chr3	62950233	62950594	LTR|ERVL-MaLR|THE1B	+	chr3	62950470	63125062	LINC00698|ENST00000468072.1	+	62950470,62952006,63102691,63106302,63113576,63118698,63122255,63123322,63124082	62950518,62952083,63102799,63106422,63113766,63118942,63122319,63123448,63125062	0.664537
SK_MEL_5_cytosolic_fraction	chr12	123272358	123272363	123272358	-	High_confidence	4	4	8	0.253979	2.807355	chr12	123272292	123272359	DNA|hAT-Charlie|Charlie4z	-	chr12	123261275	123272334	CDK2AP1|ENST00000544658.5	-	123261275,123265195,123267184,123272156	123261803,123265322,123267282,123272334	0.750000
SK_MEL_5_cytosolic_fraction	chr15	62281925	62281958	62281957	-	High_confidence	52	53	85	2.698530	5.903989	chr15	62281800	62282152	LTR|ERVL-MaLR|THE1A	-	chr15	62271265	62281934	MSTRG.9772.1	-	62271265,62272675,62276052,62281876	62271997,62272768,62276130,62281934	0.694118
SK_MEL_5_cytosolic_fraction	chr12	6582139	6582242	6582139	-	High_confidence	4	4	33	1.047665	4.687500	chr12	6581880	6582102	SINE|Alu|AluSx1	-	chr12	6570190	6581343	CHD4|ENST00000644652.1	-	6570190,6570868,6573073,6577784,6578028,6578408,6578845,6580581,6581043,6581290	6570693,6571032,6573269,6577917,6578137,6578546,6578917,6580699,6581173,6581343	0.909091
SK_MEL_5_cytosolic_fraction	chr4	152412488	152412489	152412488	-	High_confidence	6	6	8	0.253979	2.500000	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
SK_MEL_5_cytosolic_fraction	chr15	42415184	42415260	42415212	-	RAMPAGE_only	5	5	36	1.142907	4.629004	chr15	42415122	42415421	SINE|Alu|AluSq2	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	0.972222
SK_MEL_5_cytosolic_fraction	chr5	111338670	111338706	111338705	+	RAMPAGE_only	7	9	16	0.507959	3.139572	chr5	111338402	111339049	LINE|L1|L1P4	-	chr5	111357960	111473324	CAMK4|ENST00000502916.5	+	111357960,111374849,111376859,111394709,111446685,111449128,111473310	111358124,111374912,111376942,111394782,111446776,111449203,111473324	0.687500
SK_MEL_5_cytosolic_fraction	chr11	5505651	5505652	5505651	-	High_confidence	1209	1222	1377	43.716193	7.229426	chr11	5505485	5505844	LTR|ERVL-MaLR|THE1B	-	chr11	5268344	5505652	HBE1|ENST00000292896.3	-	5268344,5269453,5269798,5505568	5268597,5269676,5270156,5505652	0.519245
SK_MEL_5_cytosolic_fraction	chr9	103741106	103741111	103741110	-	High_confidence	119	123	258	8.190833	5.526055	chr9	103740939	103741293	LTR|ERVL-MaLR|THE1B	-	chr9	103718383	103741097	MSTRG.29452.1	-	103718383,103726509,103741023	103718980,103726601,103741097	0.914729
SK_MEL_5_cytosolic_fraction	chr22	35505966	35505983	35505966	-	High_confidence	2	2	6	0.190484	2.584963	chr22	35505918	35506359	LINE|L1|L1ME1	-	chr22	35501860	35506138	MSTRG.19589.1	-	35501860,35505880	35503437,35506138	1.000000
SK_MEL_5_cytosolic_fraction	chr12	70468078	70468103	70468102	+	High_confidence	5	5	21	0.666696	4.247928	chr12	70467961	70468294	LTR|ERV1|MER61A	+	chr12	70468084	70543040	AC025569.1|ENST00000548687.5	+	70468084,70510211,70510407,70513184,70520198,70520785,70522523,70527674,70538049	70468327,70510284,70510577,70513227,70520267,70520928,70522630,70527738,70543040	0.714286
SK_MEL_5_cytosolic_fraction	chr7	134212917	134213095	134213072	+	High_confidence	129	225	1373	43.589203	7.462708	chr7	134212936	134213132	LINE|L2|L2b	-	chr7	134212878	134264186	MSTRG.27259.6	+	134212878,134221778,134247555,134248950,134258256,134263844	134213002,134221918,134247644,134249076,134258405,134264186	0.766205
SK_MEL_5_cytosolic_fraction	chr22	39874157	39874178	39874177	-	High_confidence	2	2	7	0.222232	2.584963	chr22	39873891	39874245	LTR|ERVL-MaLR|THE1B	-	chr22	39743041	39874087	MSTRG.19688.2	-	39743041,39765222,39820992,39835839,39861764,39873974	39744283,39765609,39821113,39835958,39862007,39874087	0.571429
SK_MEL_5_cytosolic_fraction	chr3	69237179	69237186	69237185	-	RAMPAGE_only	4	4	11	0.349222	3.121928	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.636364
SK_MEL_5_cytosolic_fraction	chr19	3062922	3062986	3062982	-	High_confidence	26	33	204	6.476473	5.958306	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.975490
SK_MEL_5_cytosolic_fraction	chr1	147173173	147173226	147173173	+	High_confidence	23	23	87	2.762025	5.489877	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.862069
SK_MEL_5_cytosolic_fraction	chr14	45715967	45715968	45715967	-	High_confidence	22	22	24	0.761938	3.447402	chr14	45715770	45716282	LTR|ERVK|LTR3B_	-	chr14	45706271	45715952	LINC02303|ENST00000555442.1	-	45706271,45711898,45715349	45706502,45711953,45715952	0.875000
SK_MEL_5_cytosolic_fraction	chr12	9567531	9567545	9567531	+	RAMPAGE_only	215	220	761	24.159784	3.685488	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9569102	9576268	MSTRG.5920.8	+	9569102,9570762,9571460,9573002,9573465,9574846,9575642	9569202,9570892,9571573,9573093,9573534,9574949,9576268	0.985545
SK_MEL_5_cytosolic_fraction	chr8	91197411	91197453	91197452	+	High_confidence	19	22	100	3.174742	5.390769	chr8	91191844	91197868	LINE|L1|L1PA3	-	chr8	91197390	91398152	MSTRG.28291.8	+	91197390,91200612,91218889,91249538,91289135,91295530,91318215,91334294,91338149,91340403,91343352,91351809,91352900,91362352,91363471,91366579,91369784,91389337,91393796,91393935,91395061	91197524,91200792,91219005,91249844,91289246,91295703,91318380,91334447,91338232,91340551,91343466,91351887,91352996,91362459,91363538,91366717,91369833,91389438,91393851,91394039,91398152	0.650000
SK_MEL_5_cytosolic_fraction	chr7	46990977	46990978	46990977	+	RAMPAGE_only	8	8	10	0.317474	2.641604	chr7	46990863	46991217	LINE|L2|L2	-	chr7	46969715	47027481	AC004870.2|ENST00000423781.1	+	46969715,46972276,47026136,47027192	46969913,46972385,47026246,47027481	0.900000
SK_MEL_5_cytosolic_fraction	chr19	9323748	9323770	9323748	+	High_confidence	5	5	12	0.380969	3.277613	chr19	9323408	9324010	LTR|ERV1|MER51A	+	chr19	9323771	9343845	ZNF559|NM_001202411.1	+	9323771,9324694,9333014,9338493,9339192,9341101,9341616	9324228,9324780,9333113,9338582,9339319,9341184,9343845	0.916667
SK_MEL_5_cytosolic_fraction	chr12	53464812	53464850	53464833	+	RAMPAGE_only	2	2	10	0.317474	3.169925	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.900000
SK_MEL_5_cytosolic_fraction	chr8	28090294	28090295	28090294	+	High_confidence	4	4	6	0.190484	2.584963	chr8	28089941	28090482	LTR|ERVL|LTR66	+	chr8	28090345	28113173	ELP3|ENST00000521570.5	+	28090345,28097218,28099827,28106712,28107912,28110369,28113018	28090403,28097318,28099966,28106783,28107976,28110438,28113173	0.666667
SK_MEL_5_cytosolic_fraction	chr9	72363471	72363499	72363497	-	High_confidence	3	6	13	0.412716	3.022055	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.923077
SK_MEL_5_cytosolic_fraction	chr4	95062037	95062046	95062045	+	RAMPAGE_only	6	6	10	0.317474	3.169925	chr4	95061793	95062180	LTR|ERVL-MaLR|MSTA	+	chr4	95051678	95154817	BMPR1B|ENST00000509540.5	+	95051678,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547	95051772,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95154817	0.500000
SK_MEL_5_cytosolic_fraction	chr6	140898419	140898430	140898423	-	High_confidence	90	172	400	12.698967	6.797485	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140898448	MSTRG.25717.3	-	140845957,140852818,140898187	140846304,140852924,140898448	0.840000
SK_MEL_5_cytosolic_fraction	chr12	632447	632463	632447	+	RAMPAGE_only	5	5	9	0.285727	2.725481	chr12	632410	632514	LINE|L2|L2	+	chr12	630890	645878	LOC100049716|NR_122124.1	+	630890,632213,632508,640843,643958	630985,632247,632616,641024,645878	0.666667
SK_MEL_5_cytosolic_fraction	chr1	246609303	246609304	246609303	+	RAMPAGE_only	4	4	7	0.222232	2.584963	chr1	246609293	246609589	SINE|Alu|AluSq2	+	chr1	246566460	246648243	CNST|ENST00000366512.7	+	246566460,246591511,246621428,246631893,246633923,246634472,246641748,246641940,246647138	246566789,246591941,246621634,246631924,246634010,246634587,246641770,246642037,246648243	0.714286
SK_MEL_5_cytosolic_fraction	chr11	65499588	65499979	65499637	+	RAMPAGE_only	21	23	218	6.920937	7.048296	chr11	65499661	65499925	LINE|L1|L1M4c	+	chr11	65497761	65506469	MALAT1|ENST00000534336.1	+	65497761	65506469	1.000000
SK_MEL_5_cytosolic_fraction	chr12	121950279	121950292	121950291	+	RAMPAGE_only	12	12	24	0.761938	4.186704	chr12	121949929	121950482	LINE|L1|L1MB5	+	chr12	121952694	121959739	WDR66|ENST00000535257.1	+	121952694,121957073,121958271,121958942	121954334,121957268,121958522,121959739	0.916667
SK_MEL_5_cytosolic_fraction	chr12	37489457	37489484	37489457	+	High_confidence	2	2	14	0.444464	3.378783	chr12	37489351	37489691	LTR|ERVL-MaLR|THE1D	+	chr12	37489521	37525326	MSTRG.6183.1	+	37489521,37489906,37512472,37519620,37521542	37489609,37490003,37512597,37519755,37525326	0.928571
SK_MEL_5_cytosolic_fraction	chr8	86413603	86413637	86413634	+	High_confidence	48	57	377	11.968776	6.761127	chr8	86413309	86413645	LINE|L2|L2c	-	chr8	86413600	86452581	MSTRG.28262.6	+	86413600,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558	86413971,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452581	0.824934
SK_MEL_5_cytosolic_fraction	chr14	24596040	24596050	24596040	+	High_confidence	4	4	21	0.666696	3.880180	chr14	24593738	24596300	LINE|L1|L1PB1	-	chr14	24595824	24658589	MSTRG.8184.8	+	24595824,24622967,24634295,24638594,24639180,24639902,24643264,24654646,24657524	24596002,24623126,24634577,24638692,24639245,24640628,24645092,24654707,24658589	0.857143
SK_MEL_5_cytosolic_fraction	chr3	9391827	9391828	9391827	-	High_confidence	11	11	14	0.444464	3.324863	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9389914	9391822	THUMPD3-AS1|ENST00000522221.1	-	9389914,9391426	9390497,9391822	0.642857
SK_MEL_5_cytosolic_fraction	chr7	156034536	156034564	156034563	-	High_confidence	52	88	365	11.587807	5.946587	chr7	156034372	156034739	LTR|ERVL-MaLR|MSTA	-	chr7	156030622	156034579	MSTRG.27495.1	-	156030622,156034453	156030932,156034579	0.950685
SK_MEL_5_cytosolic_fraction	chr4	158146645	158146652	158146651	-	RAMPAGE_only	3	4	9	0.285727	2.500000	chr4	158146455	158146702	SINE|MIR|MIR	-	chr4	158124579	158172566	FAM198B|NM_016613.6	-	158124579,158130785,158155610,158170465,158172338	158127614,158131012,158155825,158171599,158172566	0.888889
SK_MEL_5_cytosolic_fraction	chr17	81362236	81362237	81362236	+	High_confidence	6	6	6	0.190484	2.584963	chr17	81362040	81362404	LTR|ERVL-MaLR|THE1B	+	chr17	81362271	81374214	AC110285.3|ENST00000574472.1	+	81362271,81371516,81373734	81362321,81371651,81374214	0.833333
SK_MEL_5_cytosolic_fraction	chr1	40067232	40067256	40067240	+	High_confidence	21	26	93	2.952510	4.846360	chr1	40067175	40067278	LINE|L2|L2	-	chr1	40067269	40071581	CAP1|ENST00000479759.5	+	40067269,40067539,40069689,40070158,40070429,40070835,40071449	40067311,40067717,40069874,40070282,40070512,40070979,40071581	0.978495
SK_MEL_5_cytosolic_fraction	chr18	976418	976436	976418	+	High_confidence	2	2	9	0.285727	2.750000	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976588	1159391	AP005328.1|ENST00000577719.5	+	976588,1133842,1137813,1159178	976895,1133952,1137864,1159391	0.666667
SK_MEL_5_cytosolic_fraction	chr6	132134141	132134204	132134143	+	High_confidence	8	15	52	1.650866	4.493307	chr6	132134140	132134291	DNA|hAT-Tip100|MamTip2	+	chr6	132133977	132147058	LINC01013|ENST00000458028.1	+	132133977,132146219	132134483,132147058	0.557692
SK_MEL_5_cytosolic_fraction	chr22	26483963	26484081	26484045	+	High_confidence	14	15	94	2.984257	5.777785	chr22	26484072	26484276	SINE|MIR|MIRb	+	chr22	26483883	26491938	SRRD|NM_001013694.2	+	26483883,26486022,26488028,26488389,26490043,26491024,26491462	26484099,26486063,26488288,26488488,26490198,26491070,26491938	0.787234
SK_MEL_5_cytosolic_fraction	chr8	85839704	85839705	85839704	+	High_confidence	156	161	215	6.825695	6.202414	chr8	85839524	85839864	LTR|ERVL-MaLR|THE1B	+	chr8	85839704	85908613	AC100801.1|ENST00000517368.1	+	85839704,85885934,85889578,85908312	85839785,85885994,85889653,85908613	0.930233
SK_MEL_5_cytosolic_fraction	chr11	16252563	16252590	16252563	-	RAMPAGE_only	5	5	19	0.603201	4.058814	chr11	16252183	16253065	LINE|L1|L1MC1	+	chr11	15966448	16341269	SOX6|ENST00000316399.10	-	15966448,15986203,15988996,16014941,16046513,16049754,16055751,16095995,16097608,16111802,16183885,16186782,16234581,16318445,16341011	15973112,15986420,15989170,16015050,16046701,16049938,16055901,16096118,16097688,16111923,16183954,16186955,16234671,16318653,16341269	0.894737
SK_MEL_5_cytosolic_fraction	chr2	215383336	215383364	215383357	-	High_confidence	7	7	27	0.857180	4.176753	chr2	215383001	215383307	SINE|Alu|AluSz	-	chr2	215379204	215383483	FN1|ENST00000490833.5	-	215379204,215380810,215382002,215382211,215383327	215379317,215381080,215382048,215382325,215383483	0.740741
SK_MEL_5_cytosolic_fraction	chr20	44887690	44887705	44887690	+	RAMPAGE_only	4	5	15	0.476211	3.589898	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885713	44906504	YWHAB|ENST00000631616.1	+	44885713,44901530,44904967,44906381	44887742,44904116,44906096,44906504	1.000000
SK_MEL_5_cytosolic_fraction	chr18	68823136	68823152	68823151	+	High_confidence	5	5	11	0.349222	2.921928	chr18	68822847	68823421	LTR|ERV1|MER51E	+	chr18	68823373	68897793	CCDC102B|ENST00000577772.5	+	68823373,68836748,68838705,68846312,68874668,68897218,68897577	68823416,68837369,68838926,68846421,68874785,68897428,68897793	0.909091
SK_MEL_5_cytosolic_fraction	chr18	77127942	77127984	77127950	-	High_confidence	26	26	106	3.365226	5.864470	chr18	77125932	77128521	LINE|L1|L1MD2	+	chr18	77066311	77127712	MBP|ENST00000583798.1	-	77066311,77105210,77127289	77066385,77105286,77127712	0.613208
SK_MEL_5_cytosolic_fraction	chr2	27350389	27350400	27350389	-	RAMPAGE_only	8	8	13	0.412716	3.026987	chr2	27350219	27350401	DNA|hAT-Charlie|MER5A	+	chr2	27325848	27356492	GTF3C2|ENST00000359541.6	-	27325848,27327176,27328036,27328467,27328843,27329120,27329378,27333654,27333973,27335597,27335916,27336197,27337243,27337480,27337925,27341947,27342825,27343307,27356086	27326893,27327284,27328189,27328596,27328931,27329282,27329523,27333784,27333999,27335706,27336028,27336425,27337342,27337558,27338020,27342233,27343147,27343578,27356492	1.000000
SK_MEL_5_cytosolic_fraction	chr7	104802861	104803032	104802861	-	High_confidence	22	23	353	11.206838	6.736758	chr7	104802722	104803154	LINE|L2|L2	+	chr7	104738597	104803539	MSTRG.26989.4	-	104738597,104744049,104752714,104759702,104761473,104785219,104785730,104798336,104799817,104802838,104803451	104738955,104744180,104752791,104759822,104761580,104785378,104785785,104798407,104800069,104802963,104803539	0.841360
SK_MEL_5_cytosolic_fraction	chrX	153357155	153357183	153357155	+	RAMPAGE_only	2	2	10	0.317474	2.921928	chrX	153356870	153357462	LTR|ERVL|LTR66	+	chrX	153352028	153360110	ZNF275|ENST00000438239.1	+	153352028,153357190,153359698	153352141,153357256,153360110	0.500000
SK_MEL_5_cytosolic_fraction	chr5	120404867	120404916	120404867	-	High_confidence	87	108	217	6.889189	6.459100	chr5	120404677	120405066	LTR|ERVL-MaLR|MSTD	-	chr5	120345906	120404837	AC113418.1|ENST00000569928.1	-	120345906,120404754	120346340,120404837	0.631336
SK_MEL_5_cytosolic_fraction	chr11	13415205	13415229	13415210	-	RAMPAGE_only	12	15	53	1.682613	4.943465	chr11	13415107	13415246	SINE|Alu|AluSx3	-	chr11	13387995	13440279	BTBD10|NM_001297742.1	-	13387995,13403167,13405658,13413529,13417157,13419459,13421641,13439883	13389141,13403278,13405856,13413650,13417260,13419745,13421838,13440279	0.811321
SK_MEL_5_cytosolic_fraction	chr16	30624047	30624048	30624047	-	High_confidence	4	5	7	0.222232	2.584963	chr16	30623844	30624281	LTR|ERVK|LTR3B_	-	chr16	30604617	30624012	ZNF689|ENST00000566673.5	-	30604617,30609524,30610587,30623739	30605447,30609638,30610782,30624012	0.714286
SK_MEL_5_cytosolic_fraction	chr9	2559262	2559265	2559264	-	RAMPAGE_only	4	7	9	0.285727	2.947703	chr9	2559104	2562332	LINE|L1|L1M1	+	chr9	2535651	2570754	VLDLR-AS1|ENST00000424605.5	-	2535651,2536358,2539398,2570621	2536015,2536453,2539552,2570754	0.888889
SK_MEL_5_cytosolic_fraction	chr18	14848038	14848042	14848041	+	RAMPAGE_only	6	6	15	0.476211	3.240224	chr18	14847634	14848304	LINE|L1|L1MEc	-	chr18	14837148	14852738	ANKRD30B|ENST00000320584.8	+	14837148,14837614,14840587,14842896,14843023,14848715,14850213,14851508	14837289,14837676,14840678,14842925,14843096,14848929,14850382,14852738	1.000000
SK_MEL_5_cytosolic_fraction	chr7	95538440	95538475	95538462	+	RAMPAGE_only	4	4	19	0.603201	4.037401	chr7	95538388	95538522	LINE|L2|L2c	-	chr7	95485900	95540231	ASB4|NM_016116.2	+	95485900,95495757,95527812,95536436,95537570	95486158,95496057,95528303,95536550,95540231	1.000000
SK_MEL_5_cytosolic_fraction	chr1	161514511	161514520	161514519	+	High_confidence	12	12	23	0.730191	3.567040	chr1	161514472	161514669	LTR|ERV1|MER34B-int	+	chr1	161514619	161518603	FCGR2A|ENST00000486608.1	+	161514619,161517974	161514874,161518603	0.826087
SK_MEL_5_cytosolic_fraction	chr3	190515054	190515100	190515076	+	High_confidence	17	20	88	2.793773	4.850708	chr3	190515115	190515348	SINE|MIR|MIRb	+	chr3	190514118	190651518	MSTRG.21589.15	+	190514118,190520489,190550341,190556129,190564288,190604127,190608994,190620274,190623343,190627322,190629349,190644247,190645698,190648337	190514219,190520709,190550505,190556216,190564353,190604413,190609181,190620440,190623415,190627449,190629498,190644397,190645842,190651518	0.897727
SK_MEL_5_cytosolic_fraction	chr6	13326410	13326432	13326410	-	High_confidence	3	3	11	0.349222	2.921928	chr6	13326180	13326482	SINE|Alu|AluSz	+	chr6	13266541	13326912	TBC1D7|ENST00000606214.5	-	13266541,13305061,13306397,13307599,13316570,13320907,13325093,13326786	13267835,13305187,13306527,13307745,13316708,13321095,13325174,13326912	0.636364
SK_MEL_5_cytosolic_fraction	chr6	10434303	10434320	10434319	-	High_confidence	4	4	9	0.285727	2.641604	chr6	10434122	10434400	LINE|L2|L2a	-	chr6	10429708	10434495	LINC00518|ENST00000472178.1	-	10429708,10434247	10430313,10434495	0.888889
SK_MEL_5_cytosolic_fraction	chr1	150729241	150729242	150729241	-	RAMPAGE_only	4	4	7	0.222232	2.584963	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150698058	150720888	HORMAD1|NM_001199829.1	-	150698058,150700111,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150714084,150714614,150717137,150719472,150720803	150698734,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150714121,150714678,150717282,150719538,150720888	0.714286
SK_MEL_5_cytosolic_fraction	chr8	105911863	105911869	105911868	-	High_confidence	11	13	26	0.825433	4.440636	chr8	105911686	105912062	LTR|ERVL-MaLR|THE1D	-	chr8	105785054	105911869	ZFPM2-AS1|ENST00000518932.5	-	105785054,105787066,105787448,105798324,105911804	105785217,105787221,105787596,105798442,105911869	0.538462
SK_MEL_5_cytosolic_fraction	chr15	60391144	60391146	60391145	-	High_confidence	5	11	11	0.349222	2.913977	chr15	60391133	60391257	SINE|MIR|MIRc	-	chr15	60357193	60391151	ANXA2|ENST00000558986.5	-	60357193,60360940,60364428,60382341,60386027,60390212,60391107	60357236,60361054,60364523,60382441,60386086,60390317,60391151	0.727273
SK_MEL_5_cytosolic_fraction	chr1	192739551	192739581	192739573	-	RAMPAGE_only	4	4	16	0.507959	3.875000	chr1	192739425	192739966	LTR|ERV1|MER51A	+	chr1	192387631	192629085	AL390957.1|ENST00000642855.1	-	192387631,192476038,192489796,192491808,192567146,192593598,192627340,192628886	192387814,192476178,192489945,192491969,192567216,192593657,192627421,192629085	0.562500
SK_MEL_5_cytosolic_fraction	chr21	38121472	38121492	38121491	+	High_confidence	329	331	971	30.826741	6.294255	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.946447
SK_MEL_5_cytosolic_fraction	chr22	32232946	32233217	32233194	-	High_confidence	2378	2464	16869	535.547170	4.678634	chr22	32233138	32233397	LINE|L1|L1MA4	+	chr22	32214611	32233335	MSTRG.19550.1	-	32214611,32220919,32224266,32225654,32229193,32230967,32232898,32233148	32218725,32221022,32224482,32225823,32229344,32231075,32233034,32233335	0.991819
SK_MEL_5_cytosolic_fraction	chr3	98732885	98732922	98732921	-	High_confidence	8	9	15	0.476211	3.664498	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98714331	98733115	MSTRG.20749.2	-	98714331,98715375,98715649,98718423,98732425	98714498,98715521,98715777,98718521,98733115	0.933333
SK_MEL_5_cytosolic_fraction	chr4	15420113	15420139	15420138	-	High_confidence	2	2	6	0.190484	2.584963	chr4	15419945	15420187	LINE|L2|L2	+	chr4	15358140	15420032	AC099550.1|ENST00000515495.1	-	15358140,15361162,15362413,15419928	15358682,15361277,15362523,15420032	0.833333
SK_MEL_5_cytosolic_fraction	chr4	152850655	152850665	152850655	+	High_confidence	2	2	7	0.222232	2.521641	chr4	152850580	152850736	DNA|hAT-Charlie|MER5A1	+	chr4	152850647	152881111	ARFIP1|ENST00000513361.1	+	152850647,152863605,152870752,152872451,152880962	152850727,152863714,152870848,152872564,152881111	0.571429
SK_MEL_5_cytosolic_fraction	chr22	50330653	50330675	50330674	+	RAMPAGE_only	4	4	12	0.380969	3.251629	chr22	50330424	50330745	SINE|Alu|AluY	+	chr22	50343303	50445090	PPP6R2|ENST00000359139.7	+	50343303,50372019,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439697,50439960,50440821,50443865,50444202	50343550,50372150,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50445090	0.500000
SK_MEL_5_cytosolic_fraction	chr3	62950283	62950316	62950315	+	High_confidence	2	2	8	0.253979	3.000000	chr3	62950233	62950594	LTR|ERVL-MaLR|THE1B	+	chr3	62950297	63125062	MSTRG.20594.1	+	62950297,62952006,62985035,63106302,63113576,63118698,63122255,63123322,63124082	62950518,62952083,62985119,63106422,63113766,63118942,63122319,63123448,63125062	0.625000
SK_MEL_5_cytosolic_fraction	chrX	147937499	147937526	147937510	+	RAMPAGE_only	4	4	18	0.571453	3.130718	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147943244	147950315	MSTRG.30849.20	+	147943244,147944904,147945533,147948682	147943326,147945051,147945616,147950315	0.833333
SK_MEL_5_cytosolic_fraction	chr5	78597169	78597226	78597225	-	RAMPAGE_only	11	13	46	1.460381	4.771711	chr5	78597167	78597326	SINE|MIR|MIR3	+	chr5	78510038	78590192	LHFPL2|ENST00000510949.1	-	78510038,78564812,78590077	78510398,78564871,78590192	0.500000
SK_MEL_5_cytosolic_fraction	chr20	37298760	37298761	37298760	+	RAMPAGE_only	24	24	24	0.761938	4.001629	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
SK_MEL_5_cytosolic_fraction	chr13	32527410	32527422	32527410	-	RAMPAGE_only	3	3	7	0.222232	2.584963	chr13	32527156	32527383	SINE|MIR|MIRc	-	chr13	32516893	32525579	N4BP2L2|ENST00000503814.1	-	32516893,32521372	32518003,32525579	0.857143
SK_MEL_5_cytosolic_fraction	chr1	74266258	74266262	74266261	+	RAMPAGE_only	10	11	17	0.539706	3.146286	chr1	74266004	74266559	LTR|ERVL-MaLR|MLT1G	-	chr1	74235400	74544424	TNNI3K|ENST00000326637.7	+	74235400,74236101,74249458,74250671,74271597,74331449,74336010,74342841,74343074,74353265,74353979,74367255,74367907,74369021,74369206,74369390,74370287,74436079,74436473,74439489,74463440,74489188,74492096,74540233,74543905	74235491,74236210,74249544,74250769,74271708,74331548,74336149,74342986,74343179,74353360,74354129,74367342,74367964,74369114,74369264,74369585,74370392,74436132,74436526,74439622,74463550,74489248,74492266,74540313,74544424	0.941176
SK_MEL_5_cytosolic_fraction	chr5	22638943	22638967	22638966	-	High_confidence	49	50	135	4.285901	6.061758	chr5	22638791	22639080	SINE|Alu|AluY	+	chr5	21750906	22638978	MSTRG.23051.2	-	21750906,21755590,21760557,21764977,21783357,21802166,21816944,21842160,21854670,21975090,22078445,22212497,22405256,22505269,22638697	21752236,21755842,21760675,21765099,21783494,21802420,21817132,21842328,21854790,21975385,22078862,22212643,22405351,22505364,22638978	0.911111
SK_MEL_5_cytosolic_fraction	chr17	74584677	74584678	74584677	+	High_confidence	297	300	310	9.841699	6.512596	chr17	74584365	74584792	LTR|ERVK|LTR3B	+	chr17	74584678	74594209	C17orf77|NM_001302809.1	+	74584678,74590518,74591983	74584914,74590745,74594209	0.532258
SK_MEL_5_cytosolic_fraction	chr3	112302622	112302643	112302624	+	High_confidence	4	8	16	0.507959	3.506891	chr3	112302478	112303209	LTR|ERV1|HERV3-int	+	chr3	112302422	112330324	MSTRG.20844.1	+	112302422,112306913,112326521,112327610,112329345,112330249	112302714,112307198,112326650,112327706,112329386,112330324	0.937500
SK_MEL_5_cytosolic_fraction	chr19	48118283	48118316	48118315	-	High_confidence	7	7	28	0.888928	4.458591	chr19	48118234	48118534	LTR|ERVL-MaLR|THE1B	+	chr19	48115448	48117880	LIG1|ENST00000599322.5	-	48115448,48115872,48117637	48115732,48115965,48117880	0.964286
SK_MEL_5_cytosolic_fraction	chr1	30815532	30815535	30815532	-	High_confidence	4	6	9	0.285727	2.947703	chr1	30815478	30815706	SINE|MIR|MIRb	+	chr1	30810377	30815553	AL137027.1|ENST00000440358.1	-	30810377,30815446	30810714,30815553	0.666667
SK_MEL_5_cytosolic_fraction	chr1	187072503	187072515	187072514	+	High_confidence	7	8	16	0.507959	3.906891	chr1	187072401	187072600	SINE|Alu|AluY	-	chr1	187072512	187480614	ERVMER61-1|ENST00000609113.2	+	187072512,187092824,187328990,187443627,187480289	187073024,187092946,187329060,187443726,187480614	0.562500
SK_MEL_5_cytosolic_fraction	chr12	64034275	64034328	64034275	+	RAMPAGE_only	134	149	619	19.651651	5.016794	chr12	64034075	64034470	LTR|ERVL-MaLR|MSTA	+	chr12	64042793	64043627	SRGAP1|ENST00000542381.1	+	64042793,64043446	64042972,64043627	0.956381
SK_MEL_5_cytosolic_fraction	chr12	9399157	9399183	9399157	-	RAMPAGE_only	3	4	10	0.317474	2.641604	chr12	9398769	9399468	LINE|L1|L1MA9	+	chr12	9397056	9401864	MSTRG.5913.5	-	9397056,9397614,9398381,9399794,9400235,9401746	9397214,9397689,9398442,9400015,9400326,9401864	0.800000
SK_MEL_5_cytosolic_fraction	chr17	65116702	65116727	65116726	+	RAMPAGE_only	4	4	11	0.349222	3.027169	chr17	65116564	65116939	LTR|ERVL-MaLR|THE1C	+	chr17	65100829	65119585	RGS9|ENST00000637818.1	+	65100829,65101206,65110715,65117054,65119151	65101042,65101296,65110966,65117210,65119585	1.000000
SK_MEL_5_cytosolic_fraction	chr15	55270756	55270757	55270756	-	High_confidence	9	9	9	0.285727	2.725481	chr15	55270754	55271222	LINE|L2|L2	+	chr15	55223915	55270874	RAB27A|ENST00000567380.5	-	55223915,55228608,55230400,55234781,55270164,55270755	55224012,55228712,55230486,55234956,55270284,55270874	0.666667
SK_MEL_5_cytosolic_fraction	chr15	65244454	65244455	65244454	-	RAMPAGE_only	231	248	320	10.159173	5.993368	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.950000
SK_MEL_5_cytosolic_fraction	chr17	43124834	43124880	43124834	-	High_confidence	3	3	23	0.730191	3.969002	chr17	43124781	43124980	SINE|Alu|AluSx	-	chr17	43045677	43125288	BRCA1|ENST00000461221.5	-	43045677,43047642,43049120,43051062,43057051,43063332,43063873,43067607,43070927,43074330,43076487,43082403,43090943,43091434,43095845,43097243,43099774,43104121,43104867,43106477,43115725,43124016,43125181	43045802,43047703,43049194,43051117,43057135,43063373,43063951,43067695,43071238,43074521,43076614,43082575,43091032,43094860,43095922,43097289,43099877,43104261,43104956,43106533,43115779,43124115,43125288	0.565217
SK_MEL_5_cytosolic_fraction	chrX	135893349	135893399	135893381	-	High_confidence	127	135	396	12.571977	5.737928	chrX	135893277	135893550	LTR|ERVL|LTR41	-	chrX	135880751	135893428	CT45A10|NM_001291529.1	-	135880751,135882535,135883007,135885175,135893344	135881315,135882629,135883256,135885350,135893428	0.984848
SK_MEL_5_cytosolic_fraction	chr15	92678192	92678213	92678212	-	RAMPAGE_only	53	74	243	7.714622	5.912788	chr15	92678051	92678466	LTR|ERVL-MaLR|MSTC	-	chr15	92619182	92668043	FAM174B|ENST00000557480.5	-	92619182,92630213,92667897	92619459,92630345,92668043	0.757202
SK_MEL_5_cytosolic_fraction	chr11	17282813	17282831	17282830	+	RAMPAGE_only	4	5	9	0.285727	2.947703	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	1.000000
SK_MEL_5_cytosolic_fraction	chr7	22725915	22726041	22726013	+	High_confidence	11	11	125	3.968427	5.123778	chr7	22725923	22726198	LTR|Gypsy?|LTR88b	+	chr7	22725883	22732002	IL6|ENST00000404625.5	+	22725883,22727178,22727443,22728692,22729513,22731405	22726258,22727281,22727634,22728806,22729660,22732002	0.984000
SK_MEL_5_cytosolic_fraction	chr16	58755976	58755977	58755976	-	RAMPAGE_only	14	14	14	0.444464	3.324863	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
SK_MEL_5_cytosolic_fraction	chr15	66354122	66354123	66354122	-	RAMPAGE_only	8	8	8	0.253979	3.000000	chr15	66354028	66355027	LINE|L2|L2a	+	chr15	66336383	66356685	TIPIN|ENST00000566524.5	-	66336383,66341149,66349059,66349314,66352128,66352814,66356638	66337181,66341356,66349123,66349437,66352207,66352955,66356685	1.000000
SK_MEL_5_cytosolic_fraction	chr19	45450739	45450771	45450770	-	High_confidence	3	3	10	0.317474	3.121928	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	1.000000
SK_MEL_5_cytosolic_fraction	chr11	78469750	78469776	78469769	-	RAMPAGE_only	15	18	67	2.127077	4.210851	chr11	78469641	78470190	LINE|L2|L2a	-	chr11	78436188	78443759	NARS2|ENST00000529771.1	-	78436188,78443660	78436814,78443759	0.850746
SK_MEL_5_cytosolic_fraction	chr2	78542001	78542039	78542038	-	High_confidence	126	134	305	9.682962	7.316344	chr2	78541256	78543178	LINE|L1|L1PBa1	+	chr2	78409445	78542066	MSTRG.16699.5	-	78409445,78456531,78485793,78541571	78413176,78456731,78485852,78542066	0.711475
SK_MEL_5_cytosolic_fraction	chr7	99358558	99358590	99358558	+	High_confidence	8	8	42	1.333391	4.686582	chr7	99358536	99358830	SINE|Alu|AluSp	-	chr7	99358665	99366214	ARPC1A|ENST00000463009.1	+	99358665,99359544,99363542,99365890	99358775,99359738,99363633,99366214	0.928571
SK_MEL_5_cytosolic_fraction	chr4	14944915	14944948	14944915	+	High_confidence	169	180	371	11.778292	6.024933	chr4	14944820	14945113	SINE|Alu|AluYa5	-	chr4	14944906	14952397	MSTRG.21856.1	+	14944906,14949045,14951673	14945176,14949791,14952397	0.975741
SK_MEL_5_cytosolic_fraction	chr7	104759805	104759818	104759817	-	RAMPAGE_only	3	3	7	0.222232	2.584963	chr7	104759749	104759985	SINE|MIR|MIRb	-	chr7	104738596	104757748	LHFPL3-AS1|ENST00000433514.5	-	104738596,104744049,104752714,104757608	104738984,104744180,104752803,104757748	0.714286
SK_MEL_5_cytosolic_fraction	chr2	177234004	177234005	177234004	-	RAMPAGE_only	6	6	8	0.253979	2.807355	chr2	177233751	177233962	SINE|MIR|MIRc	-	chr2	177233476	177263537	NFE2L2|ENST00000477534.1	-	177233476,177263402	177234271,177263537	0.500000
SK_MEL_5_cytosolic_fraction	chrX	136222393	136222453	136222393	-	RAMPAGE_only	6	6	26	0.825433	3.913270	chrX	136222161	136222377	SINE|MIR|MIR	-	chrX	136216813	136220813	MAP7D3|ENST00000471510.1	-	136216813,136219397,136219592,136220764	136217258,136219495,136219671,136220813	0.923077
SK_MEL_5_cytosolic_fraction	chr3	15756541	15756606	15756557	-	High_confidence	26	26	206	6.539968	6.436101	chr3	15756542	15756684	SINE|MIR|MIRc	+	chr3	15667235	15756551	ANKRD28|NM_001195099.1	-	15667235,15675897,15676973,15677479,15678208,15679300,15679475,15685225,15686001,15686221,15690018,15694738,15695187,15696133,15707923,15709667,15711210,15712139,15713526,15714577,15720914,15724381,15735409,15737032,15751749,15756483	15670556,15675989,15677056,15677562,15678354,15679384,15679563,15685445,15686119,15686309,15690220,15694813,15695214,15696245,15708064,15709736,15711274,15712222,15713641,15714656,15721127,15724524,15735497,15737233,15751820,15756551	0.975728
SK_MEL_5_cytosolic_fraction	chr2	54533152	54533173	54533171	+	RAMPAGE_only	3	7	15	0.476211	2.923231	chr2	54532855	54533349	DNA|TcMar-Tigger|Tigger7	-	chr2	54558393	54662308	SPTBN1|NM_178313.2	+	54558393,54599091,54612160,54616206,54617607,54618077,54621399,54622299,54623478,54624803,54625931,54628096,54628932,54629891,54630854,54632565,54637712,54642982,54644322,54645228,54645927,54646193,54647130,54648985,54649614,54653608,54655069,54655913,54657849,54659153,54659935	54558887,54599243,54612334,54616298,54617688,54618193,54621512,54622487,54623596,54624962,54626234,54628250,54629803,54630029,54631611,54632768,54637803,54643129,54644586,54645453,54646017,54646475,54647261,54649190,54649989,54653853,54655208,54655998,54658046,54659266,54662308	1.000000
SK_MEL_5_cytosolic_fraction	chr10	34405746	34405908	34405746	-	High_confidence	11	11	66	2.095329	5.237452	chr10	34405665	34405965	LTR|ERVL|LTR40b	-	chr10	34269786	34405956	MSTRG.3225.9	-	34269786,34284134,34317106,34331116,34336198,34337274,34341626,34347964,34359146,34360070,34372497,34374873,34377966,34382539,34384128,34399329,34401825,34405659	34269899,34284245,34317338,34331344,34336243,34337426,34341816,34348115,34359317,34360259,34372536,34375002,34378106,34382922,34384254,34399413,34401917,34405956	0.924242
SK_MEL_5_cytosolic_fraction	chr7	47793472	47793508	47793472	+	RAMPAGE_only	39	39	61	1.936592	4.398970	chr7	47793280	47793633	LTR|ERVL-MaLR|THE1A	+	chr7	47795290	47819847	C7orf69|NM_025031.2	+	47795290,47818025,47819506	47795443,47818195,47819847	0.672131
SK_MEL_5_cytosolic_fraction	chr15	90762302	90762407	90762359	+	High_confidence	12	12	67	2.127077	5.636912	chr15	90762254	90762815	LINE|L2|L2b	-	chr15	90762395	90811327	BLM|ENST00000560136.5	+	90762395,90762965,90766909,90769132,90769437,90782821,90784920,90790648,90794166,90798189,90803520,90804166,90809136,90811204	90762422,90763157,90767023,90769231,90769586,90782928,90785081,90790844,90794357,90798337,90803720,90804359,90809259,90811327	0.626866
SK_MEL_5_cytosolic_fraction	chr3	98733168	98733231	98733221	+	High_confidence	21	24	139	4.412891	6.276871	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.928058
SK_MEL_5_cytosolic_fraction	chr2	113374993	113374994	113374993	-	High_confidence	14	15	15	0.476211	2.950212	chr2	113374826	113375188	LTR|ERVL-MaLR|THE1A	-	chr2	113370499	113374942	MSTRG.17008.1	-	113370499,113374910	113370764,113374942	0.800000
SK_MEL_5_cytosolic_fraction	chr14	102234993	102235053	102235014	-	High_confidence	13	13	90	2.857267	5.663696	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102229432	102235063	MOK|ENST00000522537.5	-	102229432,102232534,102233687,102234956	102229657,102232708,102233789,102235063	0.600000
SK_MEL_5_cytosolic_fraction	chr16	11782686	11782762	11782693	-	High_confidence	10	10	41	1.301644	4.385957	chr16	11782598	11782913	SINE|Alu|AluSx1	-	chr16	11750585	11782552	ZC3H7A|ENST00000396516.6	-	11750585,11752668,11756236,11758430,11761405,11761909,11762670,11763477,11765052,11765488,11767416,11768314,11769030,11770782,11774235,11774979,11776319,11776451,11776750,11779165,11781424,11782286	11751506,11752832,11756370,11758539,11761511,11762043,11762747,11763659,11765153,11765685,11767578,11768501,11769095,11770987,11774519,11775013,11776358,11776532,11776909,11779363,11781464,11782552	0.902439
SK_MEL_5_cytosolic_fraction	chr5	97088999	97089000	97088999	+	High_confidence	9	9	12	0.380969	2.918296	chr5	97088919	97089287	LTR|ERVL-MaLR|THE1B	+	chr5	97089074	97437217	LIX1-AS1|ENST00000504578.2	+	97089074,97101758,97103025,97183007,97183504,97431743,97436552	97089204,97102132,97103094,97183240,97183669,97431900,97437217	1.000000
SK_MEL_5_cytosolic_fraction	chr3	169756807	169756808	169756807	-	RAMPAGE_only	55	71	71	2.254067	3.586974	chr3	169756647	169756989	LTR|ERVL-MaLR|THE1A	-	chr3	169483670	169484080	RPL22P1|ENST00000418623.1	-	169483670	169484080	0.859155
SK_MEL_5_cytosolic_fraction	chr8	86413890	86413895	86413894	+	High_confidence	17	17	49	1.555623	5.220176	chr8	86413781	86413929	LINE|L2|L2c	-	chr8	86413600	86452581	MSTRG.28262.6	+	86413600,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558	86413971,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452581	0.836735
SK_MEL_5_cytosolic_fraction	chr14	50756643	50756674	50756643	-	RAMPAGE_only	2	2	13	0.412716	3.392747	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
SK_MEL_5_cytosolic_fraction	chr1	6200559	6200658	6200657	-	High_confidence	10	14	86	2.730278	3.910213	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.988372
SK_MEL_5_cytosolic_fraction	chr2	158325464	158325502	158325464	-	RAMPAGE_only	3	3	13	0.412716	2.918296	chr2	158324837	158326485	LINE|L2|L2a	+	chr2	158171543	158380960	CCDC148|ENST00000409187.5	-	158171543,158176520,158178878,158220594,158250771,158309432,158313755,158338725,158338989,158340241,158340597,158345214,158358448,158366013,158380820	158172259,158176661,158178996,158220713,158250912,158309639,158313894,158338907,158339085,158340393,158340680,158345318,158358570,158366076,158380960	0.846154
SK_MEL_5_cytosolic_fraction	chr7	10973307	10973336	10973335	+	High_confidence	5	5	21	0.666696	4.201841	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.523810
SK_MEL_5_cytosolic_fraction	chr14	73476428	73476457	73476456	-	RAMPAGE_only	3	5	11	0.349222	2.921928	chr14	73476292	73476641	LINE|L2|L2c	+	chr14	73460934	73463642	LOC101928143|NR_135251.1	-	73460934,73462528,73463474	73461264,73462689,73463642	0.545455
SK_MEL_5_cytosolic_fraction	chr19	48118414	48118415	48118414	+	High_confidence	26	30	35	1.111160	4.707715	chr19	48118234	48118534	LTR|ERVL-MaLR|THE1B	+	chr19	48118437	48127384	AC011466.3|ENST00000596839.1	+	48118437,48121152,48122208,48127030	48118500,48121259,48122365,48127384	0.657143
SK_MEL_5_cytosolic_fraction	chr1	247533751	247533771	247533751	-	High_confidence	2	2	8	0.253979	2.750000	chr1	247533249	247533882	LTR|ERV1|MER39B	+	chr1	247530131	247533839	OR2C3|NM_198074.4	-	247530131,247533506	247532540,247533839	1.000000
SK_MEL_5_cytosolic_fraction	chrX	138990595	138990676	138990597	-	High_confidence	396	466	885	28.096464	5.513710	chrX	138990423	138990790	LTR|ERVL-MaLR|THE1B	-	chrX	138635485	138990567	FGF13|ENST00000455663.5	-	138635485,138702983,138708817,138857511,138985017,138990507	138635655,138703087,138708928,138857679,138985091,138990567	0.953672
SK_MEL_5_cytosolic_fraction	chr19	48270045	48270046	48270045	+	High_confidence	4	4	7	0.222232	2.807355	chr19	48269716	48270187	LTR|ERV1|LTR7C	+	chr19	48270098	48287608	ZNF114|NM_153608.2	+	48270098,48271244,48271726,48279730,48282370,48285760	48270219,48271449,48271828,48279808,48282497,48287608	0.857143
SK_MEL_5_cytosolic_fraction	chrX	153356655	153356656	153356655	+	RAMPAGE_only	5	5	7	0.222232	2.807355	chrX	153356470	153356818	LTR|ERVL-MaLR|THE1B	+	chrX	153352028	153360110	ZNF275|ENST00000438239.1	+	153352028,153357190,153359698	153352141,153357256,153360110	0.857143
SK_MEL_5_cytosolic_fraction	chr8	75324606	75324677	75324606	-	RAMPAGE_only	10	11	47	1.492129	5.139487	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223116	75278889	CASC9|NR_103849.2	-	75223116,75278712	75224358,75278889	0.531915
SK_MEL_5_cytosolic_fraction	chr1	154976011	154976032	154976031	+	High_confidence	11	12	27	0.857180	3.352136	chr1	154975847	154976087	LINE|L1|L1PREC2	+	chr1	154975990	154979074	MSTRG.1981.8	+	154975990,154977986,154978724	154976168,154978114,154979074	1.000000
SK_MEL_5_cytosolic_fraction	chr2	11201318	11201327	11201326	-	RAMPAGE_only	3	3	7	0.222232	2.584963	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.857143
SK_MEL_5_cytosolic_fraction	chr7	134258337	134258378	134258377	+	RAMPAGE_only	2	2	8	0.253979	2.807355	chr7	134258415	134258706	SINE|Alu|AluSq	+	chr7	134212878	134264186	MSTRG.27259.6	+	134212878,134221778,134247555,134248950,134258256,134263844	134213002,134221918,134247644,134249076,134258405,134264186	0.750000
SK_MEL_5_cytosolic_fraction	chrX	115211353	115211357	115211356	+	RAMPAGE_only	9	12	15	0.476211	3.106891	chrX	115211178	115211520	LTR|ERVL-MaLR|THE1B	+	chrX	115209442	115307485	MSTRG.30682.1	+	115209442,115301991,115303299,115306204	115209513,115302123,115303418,115307485	1.000000
SK_MEL_5_cytosolic_fraction	chr21	33968463	33968481	33968463	-	High_confidence	6	7	17	0.539706	3.577820	chr21	33968191	33968612	LTR|ERVL-MaLR|MLT1J	-	chr21	33967100	33968573	AP000569.1|ENST00000607953.1	-	33967100,33968232	33967350,33968573	0.941176
SK_MEL_5_cytosolic_fraction	chr14	83639297	83639299	83639297	+	High_confidence	41	52	61	1.936592	5.043494	chr14	83639298	83645330	LINE|L1|L1PA3	+	chr14	83638959	83658709	MSTRG.8847.1	+	83638959,83639299,83646543,83658422	83639082,83639395,83646654,83658709	0.737705
SK_MEL_5_cytosolic_fraction	chr19	9140390	9140428	9140390	+	High_confidence	40	40	185	5.873272	6.224344	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.816216
SK_MEL_5_cytosolic_fraction	chr8	143281653	143281687	143281686	-	High_confidence	56	68	331	10.508395	4.615550	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.764350
SK_MEL_5_cytosolic_fraction	chr1	185834569	185834596	185834572	-	High_confidence	3	3	10	0.317474	3.169925	chr1	185834183	185834763	LTR|ERVL-MaLR|MLT1F2	-	chr1	185823898	185834573	MSTRG.2366.1	-	185823898,185834403	185830719,185834573	0.800000
SK_MEL_5_cytosolic_fraction	chr1	236024970	236024979	236024970	+	High_confidence	4	4	9	0.285727	2.725481	chr1	236024947	236025251	SINE|Alu|AluSx	-	chr1	236025006	236027970	MSTRG.2835.1	+	236025006,236025904,236027298	236025659,236026058,236027970	1.000000
SK_MEL_5_cytosolic_fraction	chr13	46466805	46466847	46466806	-	High_confidence	8	12	49	1.555623	5.012470	chr13	46466605	46467206	LTR|ERV1|HERVE-int	+	chr13	46455134	46466816	LINC01198|ENST00000648041.1	-	46455134,46457839,46464735,46465903,46466608	46455511,46457913,46464819,46465987,46466816	0.591837
SK_MEL_5_cytosolic_fraction	chr18	14827404	14827527	14827526	+	RAMPAGE_only	34	38	180	5.714535	5.946098	chr18	14827405	14827653	LTR|ERVL|MER21B	+	chr18	14837148	14852738	ANKRD30B|ENST00000320584.8	+	14837148,14837614,14840587,14842896,14843023,14848715,14850213,14851508	14837289,14837676,14840678,14842925,14843096,14848929,14850382,14852738	0.811111
SK_MEL_5_cytosolic_fraction	chr12	108724460	108724474	108724473	-	RAMPAGE_only	15	17	51	1.619118	5.289881	chr12	108724418	108724519	SINE|MIR|MIRc	+	chr12	108645108	108730843	CORO1C|NM_001276471.1	-	108645108,108648604,108648962,108652271,108654305,108657303,108658737,108662028,108678271,108701123,108730622	108647522,108648850,108649020,108652417,108654410,108657423,108658919,108662158,108678394,108701323,108730843	0.647059
SK_MEL_5_cytosolic_fraction	chr4	136921433	136921434	136921433	-	High_confidence	20	20	20	0.634948	3.621928	chr4	136921275	136921628	LTR|ERVL-MaLR|THE1A	-	chr4	136809068	136921382	LINC02511|ENST00000512039.1	-	136809068,136813649,136916174,136921341	136809212,136813731,136916226,136921382	0.900000
SK_MEL_5_cytosolic_fraction	chrX	120438115	120438116	120438115	-	RAMPAGE_only	4	5	7	0.222232	2.584963	chrX	120437873	120438156	SINE|Alu|AluSq2	-	chrX	120436493	120469306	LAMP2|ENST00000371335.4	-	120436493,120441729,120442598,120446304,120447840,120448969,120455356,120456650,120469105	120439293,120441894,120442662,120446427,120448025,120449128,120455570,120456769,120469306	0.857143
SK_MEL_5_cytosolic_fraction	chr19	18544035	18544063	18544035	-	High_confidence	1	1	7	0.222232	2.584963	chr19	18544020	18544075	SINE|MIR|MIR3	-	chr19	18538375	18544039	MSTRG.14934.11	-	18538375,18539370,18539550,18541678,18543908	18538433,18539459,18539720,18541995,18544039	0.857143
SK_MEL_5_cytosolic_fraction	chr2	37928721	37928734	37928733	+	High_confidence	5	5	12	0.380969	3.418296	chr2	37928485	37928833	LINE|L2|L2	+	chr2	37928758	38017744	RMDN2|ENST00000406384.5	+	37928758,37929261,37974039,37975211,37981282,37989540,37991219,37997415,38003990,38004135,38017185	37928936,37929729,37974214,37975314,37981343,37989616,37991297,37997514,38004044,38004216,38017744	1.000000
SK_MEL_5_cytosolic_fraction	chr1	77169283	77169311	77169310	-	High_confidence	3	3	7	0.222232	2.807355	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77092201	77169319	PIGK|ENST00000487906.5	-	77092201,77122274,77154448,77161294,77161593,77163845,77169259	77092490,77122359,77154621,77161405,77161711,77163942,77169319	0.857143
SK_MEL_5_cytosolic_fraction	chr19	48270080	48270081	48270080	+	High_confidence	339	355	365	11.587807	6.307285	chr19	48269716	48270187	LTR|ERV1|LTR7C	+	chr19	48270098	48287608	ZNF114|NM_153608.2	+	48270098,48271244,48271726,48279730,48282370,48285760	48270219,48271449,48271828,48279808,48282497,48287608	0.841096
SK_MEL_5_cytosolic_fraction	chr14	93810582	93810600	93810599	+	High_confidence	6	7	10	0.317474	2.921928	chr14	93810467	93810864	LTR|ERVL-MaLR|MLT1A1	+	chr14	93810644	93820101	MSTRG.8925.1	+	93810644,93818978	93810783,93820101	1.000000
SK_MEL_5_cytosolic_fraction	chr7	30563019	30563100	30563042	+	High_confidence	5	5	29	0.920675	4.458591	chr7	30563019	30563431	LINE|CR1|L3	+	chr7	30563041	30578061	MSTRG.26311.1	+	30563041,30568661,30577722	30563498,30568701,30578061	0.586207
SK_MEL_5_cytosolic_fraction	chr1	60825874	60825875	60825874	-	High_confidence	6	6	8	0.253979	3.000000	chr1	60825624	60825834	SINE|MIR|MIRb	-	chr1	60684658	60825852	MSTRG.1113.4	-	60684658,60729574,60732446,60733463,60825335,60825640	60684677,60729667,60732508,60733522,60825385,60825852	0.500000
SK_MEL_5_cytosolic_fraction	chr20	8600707	8600739	8600725	+	High_confidence	6	6	39	1.238149	4.323732	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600725	8788523	PLCB1|ENST00000626966.2	+	8600725,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8600781,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788523	0.897436
SK_MEL_5_cytosolic_fraction	chr14	81192598	81192623	81192622	-	RAMPAGE_only	5	5	17	0.539706	3.577820	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.941176
SK_MEL_5_cytosolic_fraction	chr17	79953100	79953172	79953171	-	RAMPAGE_only	8	9	51	1.619118	4.412840	chr17	79953109	79953222	SINE|MIR|MIRc	+	chr17	79947644	79952013	TBC1D16|ENST00000574241.6	-	79947644,79948871,79949716,79950410,79951449,79951985	79947831,79949006,79949823,79950575,79951597,79952013	0.627451
SK_MEL_5_cytosolic_fraction	chr7	16484662	16484684	16484683	-	RAMPAGE_only	21	21	34	1.079412	4.500000	chr7	16484528	16485041	LTR|ERVL|LTR16E2	+	chr7	16461480	16465849	SOSTDC1|NM_015464.2	-	16461480,16465463	16462963,16465849	0.558824
SK_MEL_5_cytosolic_fraction	chr12	49738991	49739020	49739019	+	High_confidence	2	4	10	0.317474	2.921928	chr12	49735987	49739725	LTR|ERV1|Harlequin-int	+	chr12	49738992	49758483	TMBIM6|ENST00000546796.5	+	49738992,49752463,49752972,49755634,49758226,49758382	49739082,49752549,49753081,49755755,49758275,49758483	0.800000
SK_MEL_5_cytosolic_fraction	chr1	148305153	148305164	148305163	-	RAMPAGE_only	6	6	10	0.317474	3.169925	chr1	148305024	148305382	LINE|L1|L1MEc	-	chr1	148290889	148297271	LINC01138|ENST00000434245.3	-	148290889,148292913,148295749,148296123,148296272,148297128	148291301,148293048,148295913,148296182,148296499,148297271	0.800000
SK_MEL_5_cytosolic_fraction	chr5	31538044	31538051	31538044	+	High_confidence	6	6	17	0.539706	3.452820	chr5	31537737	31538167	LTR|ERVL-MaLR|MLT1J	-	chr5	31538172	31545714	C5orf22|ENST00000510530.1	+	31538172,31540948,31541280,31545645	31538689,31541011,31541402,31545714	0.882353
SK_MEL_5_cytosolic_fraction	chr5	181248085	181248102	181248101	-	High_confidence	9	9	44	1.396886	4.305548	chr5	181248093	181248300	LINE|L2|L2b	+	chr5	181238169	181248096	RACK1|ENST00000507000.5	-	181238169,181239066,181239486,181241491,181242173,181248008	181238239,181239177,181239582,181241639,181242345,181248096	0.886364
SK_MEL_5_cytosolic_fraction	chr14	93810634	93810690	93810634	+	High_confidence	12	15	44	1.396886	4.294406	chr14	93810467	93810864	LTR|ERVL-MaLR|MLT1A1	+	chr14	93810644	93820101	MSTRG.8925.1	+	93810644,93818978	93810783,93820101	1.000000
SK_MEL_5_cytosolic_fraction	chr7	82894599	82894600	82894599	-	High_confidence	6	7	9	0.285727	2.750000	chr7	82894311	82894657	LTR|ERVL-MaLR|THE1B	-	chr7	82822096	82894454	PCLO|ENST00000426442.6	-	82822096,82824235,82826588,82827872,82838217,82841458,82845270,82846566,82847146,82879336,82894396	82822689,82824416,82826660,82827966,82838342,82841509,82845485,82846634,82847247,82879462,82894454	0.666667
SK_MEL_5_cytosolic_fraction	chr1	247533826	247533840	247533826	-	High_confidence	13	13	23	0.730191	3.913977	chr1	247533249	247533882	LTR|ERV1|MER39B	+	chr1	247530131	247533839	OR2C3|NM_198074.4	-	247530131,247533506	247532540,247533839	0.956522
SK_MEL_5_cytosolic_fraction	chr5	116830186	116830191	116830186	-	High_confidence	4	4	8	0.253979	2.807355	chr5	116830073	116830291	LTR|ERVL|LTR33B	-	chr5	116820992	116830187	AC010267.1|ENST00000508636.1	-	116820992,116825528,116830124	116821137,116825873,116830187	0.625000
SK_MEL_5_cytosolic_fraction	chr4	32010199	32010221	32010220	-	High_confidence	1260	1550	5969	189.500329	6.713451	chr4	32009763	32010888	LINE|L1|L1PA8A	+	chr4	32003076	32010414	MSTRG.21947.1	-	32003076,32007666,32009751,32010117	32006022,32007713,32009815,32010414	0.986430
SK_MEL_5_cytosolic_fraction	chr15	78306517	78306525	78306517	-	RAMPAGE_only	5	5	10	0.317474	2.947703	chr15	78306427	78306552	LINE|CR1|L3	-	chr15	78283234	78299794	WDR61|ENST00000267973.6	-	78283234,78285260,78286040,78288288,78289618,78289950,78292615,78293166,78294945,78295674,78299561	78283521,78285339,78286133,78288382,78289712,78290099,78292788,78293272,78294973,78295725,78299794	0.900000
SK_MEL_5_cytosolic_fraction	chr13	22040971	22040972	22040971	+	High_confidence	13	13	19	0.603201	4.142664	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.631579
SK_MEL_5_cytosolic_fraction	chr3	18693879	18693911	18693897	+	High_confidence	5	6	32	1.015917	3.495510	chr3	18692573	18694307	LINE|L1|L1PA3	-	chr3	18693886	18917692	SATB1-AS1|ENST00000425799.6	+	18693886,18695567,18697899,18745953,18763752,18846850,18906700,18917650	18693953,18695628,18697975,18746070,18763791,18846953,18906806,18917692	0.625000
SK_MEL_5_cytosolic_fraction	chr19	39480263	39480284	39480283	+	High_confidence	8	10	24	0.761938	3.490602	chr19	39479461	39480441	LTR|ERVK|LTR5_Hs	+	chr19	39480411	39490888	TIMM50|ENST00000544017.5	+	39480411,39481882,39482884,39483134,39485543,39485687,39486186,39486396,39488060,39488538,39489718	39480961,39482033,39482916,39483156,39485602,39485807,39486291,39486495,39488217,39488645,39490888	1.000000
SK_MEL_5_cytosolic_fraction	chr2	79229436	79229459	79229436	+	RAMPAGE_only	94	98	169	5.365313	5.888950	chr2	79229241	79229597	LTR|ERVL-MaLR|THE1A	+	chr2	79281463	79340163	CTNNA2|ENST00000496251.5	+	79281463,79312708,79319711,79319809,79339614,79339947	79281535,79312796,79319724,79319905,79339862,79340163	0.585799
SK_MEL_5_cytosolic_fraction	chr22	32217913	32218158	32218156	-	RAMPAGE_only	6	10	116	3.682700	4.809732	chr22	32218125	32218436	SINE|Alu|AluYk3	+	chr22	32214611	32233335	MSTRG.19550.1	-	32214611,32220919,32224266,32225654,32229193,32230967,32232898,32233148	32218725,32221022,32224482,32225823,32229344,32231075,32233034,32233335	1.000000
SK_MEL_5_cytosolic_fraction	chr3	187027828	187027830	187027829	+	RAMPAGE_only	4	8	9	0.285727	2.725481	chr3	187027772	187028202	LINE|L2|L2	-	chr3	187025478	187043084	ST6GAL1|ENST00000423451.5	+	187025478,187038741,187042653	187025517,187038873,187043084	1.000000
SK_MEL_5_cytosolic_fraction	chr14	66607268	66607281	66607268	+	RAMPAGE_only	2	2	6	0.190484	2.584963	chr14	66605831	66610303	LINE|L1|L1PA16	-	chr14	66508515	66880033	GPHN|ENST00000557654.5	+	66508515,66681106,66709356,66776463,66824473,66879938	66508591,66681185,66709458,66776521,66824566,66880033	0.500000
SK_MEL_5_cytosolic_fraction	chr4	13580291	13580313	13580291	-	High_confidence	2	2	6	0.190484	2.584963	chr4	13580252	13580449	SINE|MIR|MIRc	-	chr4	13569505	13581048	BOD1L1|ENST00000507943.1	-	13569505,13572701,13576837,13577402,13577581,13579927,13581019	13570128,13572842,13576991,13577487,13577631,13579973,13581048	1.000000
SK_MEL_5_cytosolic_fraction	chr2	55618850	55618887	55618850	-	High_confidence	12	12	44	1.396886	5.232159	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55548378	55618880	MSTRG.16427.3	-	55548378,55558774,55564312,55564901,55568193,55573618,55577314,55579678,55581566,55585050,55586617,55588878,55603977,55615450,55617143,55618065	55550006,55558968,55564497,55565041,55568363,55573777,55577356,55579781,55581698,55585167,55586734,55588956,55604076,55615506,55617978,55618880	1.000000
SK_MEL_5_cytosolic_fraction	chr5	104079901	104079927	104079918	+	High_confidence	19	27	55	1.746108	5.476725	chr5	104074362	104080381	LINE|L1|L1PA2	-	chr5	104079910	104105403	LINC02163|ENST00000514769.1	+	104079910,104080907,104081879,104104173,104105359	104080124,104081041,104081947,104104287,104105403	0.545455
SK_MEL_5_cytosolic_fraction	chr4	99906530	99906546	99906545	-	High_confidence	6	6	11	0.349222	3.121928	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.909091
SK_MEL_5_cytosolic_fraction	chr12	119868997	119869113	119868997	-	RAMPAGE_only	80	102	671	21.302516	6.151239	chr12	119868893	119868972	SINE|MIR|MIRb	-	chr12	119685790	119877288	CIT|ENST00000261833.11	-	119685790,119690150,119697658,119697975,119700744,119701623,119701849,119704362,119708178,119710250,119710539,119712177,119712590,119713202,119713467,119714196,119718244,119718698,119720477,119721308,119728501,119730494,119734163,119735159,119742410,119752049,119757370,119758590,119760938,119767086,119772769,119775785,119776357,119776671,119782517,119783907,119784959,119803205,119822819,119825164,119832770,119834085,119850173,119857522,119869059,119876072,119877248	119688255,119690454,119697838,119698054,119700825,119701752,119701958,119704455,119708318,119710386,119710620,119712347,119712695,119713294,119713648,119714334,119718409,119718861,119720585,119721449,119728606,119730630,119734357,119735357,119742464,119752247,119757545,119758700,119761055,119767182,119772910,119775839,119776408,119776842,119782637,119784051,119785065,119803389,119822973,119825368,119832864,119834228,119850275,119857698,119869201,119876181,119877288	0.985097
SK_MEL_5_cytosolic_fraction	chr2	216107401	216107435	216107401	+	High_confidence	3	6	10	0.317474	2.921928	chr2	216107336	216107624	SINE|Alu|AluJo	+	chr2	216107463	216206303	XRCC5|ENST00000392133.7	+	216107463,216107652,216109090,216113015,216116658,216117745,216119042,216122061,216125916,216127535,216130874,216132324,216137087,216138088,216141185,216148082,216160067,216161978,216190224,216192638,216194918,216204321,216205187	216107532,216107698,216109457,216113129,216116842,216117794,216119165,216122253,216126031,216127674,216130987,216132387,216137225,216138179,216141319,216148276,216160161,216162048,216190334,216192735,216194986,216204396,216206303	1.000000
SK_MEL_5_cytosolic_fraction	chr9	120543267	120543286	120543267	-	RAMPAGE_only	4	4	11	0.349222	3.321928	chr9	120543133	120543401	LINE|L2|L2a	+	chr9	120527825	120539120	CDK5RAP2|ENST00000472883.1	-	120527825,120528743,120536371,120539040	120527925,120528797,120536526,120539120	0.545455
SK_MEL_5_cytosolic_fraction	chr7	91979909	91979953	91979909	+	RAMPAGE_only	11	11	29	0.920675	4.593069	chr7	91979517	91979972	DNA|TcMar-Tigger|MER44B	-	chr7	91973755	91995713	AKAP9|ENST00000438114.1	+	91973755,91980288,91992884,91994620,91995602	91973968,91980333,91993055,91994776,91995713	0.793103
SK_MEL_5_cytosolic_fraction	chr15	66502611	66502741	66502611	-	High_confidence	93	94	665	21.112032	6.279334	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.933835
SK_MEL_5_cytosolic_fraction	chr5	40761218	40761235	40761218	-	RAMPAGE_only	6	6	11	0.349222	3.095795	chr5	40761166	40761420	LINE|L1|L1MC5a	+	chr5	40759378	40798195	PRKAA1|NM_206907.3	-	40759378,40764513,40764751,40767465,40769415,40771718,40774927,40775409,40777444,40798062	40763022,40764640,40765238,40767690,40769503,40771863,40774972,40775503,40777586,40798195	1.000000
SK_MEL_5_cytosolic_fraction	chr20	44696111	44696112	44696111	-	High_confidence	7	7	10	0.317474	2.725481	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.500000
SK_MEL_5_cytosolic_fraction	chr3	29280832	29280872	29280832	-	High_confidence	3	3	17	0.539706	3.500000	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.647059
SK_MEL_5_cytosolic_fraction	chr12	9869590	9869640	9869590	-	High_confidence	8	12	41	1.301644	4.731884	chr12	9869538	9869722	DNA|hAT-Charlie|MER105	-	chr12	9856900	9869386	CLEC2B|ENST00000540743.1	-	9856900,9862498,9869204	9857637,9862573,9869386	0.512195
SK_MEL_5_cytosolic_fraction	chr1	23403931	23403944	23403943	-	RAMPAGE_only	4	5	10	0.317474	2.725481	chr1	23403928	23404035	LINE|RTE-BovB|MamRTE1	+	chr1	23381060	23424740	TCEA3|ENST00000450454.6	-	23381060,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23381474,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424740	0.900000
SK_MEL_5_cytosolic_fraction	chr11	46171916	46171921	46171920	+	High_confidence	9	11	16	0.507959	3.189898	chr11	46171722	46172107	LTR|ERVL-MaLR|THE1C	+	chr11	46171946	46177105	AC024475.4|ENST00000533793.1	+	46171946,46174584,46176348	46172024,46174690,46177105	0.937500
SK_MEL_5_cytosolic_fraction	chr15	78245687	78245688	78245687	-	High_confidence	7	7	8	0.253979	2.807355	chr15	78245271	78246702	LTR|ERV1|LTR12C	-	chr15	78170913	78245688	ACSBG1|ENST00000560817.5	-	78170913,78173592,78174384,78178613,78179549,78180754,78181968,78182465,78182704,78245268	78171529,78173839,78174524,78178831,78179780,78180936,78182145,78182615,78182785,78245688	0.750000
SK_MEL_5_cytosolic_fraction	chr1	240339052	240339053	240339052	+	RAMPAGE_only	5	5	7	0.222232	2.521641	chr1	240338677	240339204	DNA|hAT-Charlie|MER1A	-	chr1	240329143	240475183	FMN2|ENST00000545751.2	+	240329143,240329338,240330602,240333886,240334108,240334120,240355815,240392510,240438060,240472371,240474127	240329167,240329468,240330749,240333946,240334118,240334229,240355908,240392562,240438210,240472453,240475183	1.000000
SK_MEL_5_cytosolic_fraction	chr3	184908367	184908422	184908398	+	High_confidence	10	10	74	2.349309	5.349298	chr3	184908278	184909120	LTR|ERV1|LTR27B	-	chr3	184908382	184926646	MSTRG.21529.26	+	184908382,184913518,184914980,184915354,184920126,184924861,184926593	184908746,184913561,184915053,184915474,184920198,184924981,184926646	0.864865
SK_MEL_5_cytosolic_fraction	chr15	78306575	78306578	78306575	-	RAMPAGE_only	3	3	8	0.253979	2.807355	chr15	78306427	78306552	LINE|CR1|L3	-	chr15	78283234	78299794	WDR61|ENST00000267973.6	-	78283234,78285260,78286040,78288288,78289618,78289950,78292615,78293166,78294945,78295674,78299561	78283521,78285339,78286133,78288382,78289712,78290099,78292788,78293272,78294973,78295725,78299794	0.625000
SK_MEL_5_cytosolic_fraction	chr18	32041731	32041764	32041731	+	High_confidence	159	165	293	9.301993	5.772909	chr18	32041620	32041929	SINE|Alu|AluYa5	-	chr18	32041822	32068489	RNF125|ENST00000583384.5	+	32041822,32042178,32045641,32065901,32068297	32041983,32042273,32045732,32066009,32068489	0.952218
SK_MEL_5_cytosolic_fraction	chr5	147839192	147839238	147839194	-	High_confidence	95	131	241	7.651127	5.047132	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.983402
SK_MEL_5_cytosolic_fraction	chr12	9568962	9568982	9568962	+	High_confidence	87	89	198	6.285988	4.008002	chr12	9568603	9569205	LTR|ERV1|HERVE-int	-	chr12	9569102	9576268	MSTRG.5920.8	+	9569102,9570762,9571460,9573002,9573465,9574846,9575642	9569202,9570892,9571573,9573093,9573534,9574949,9576268	0.964646
SK_MEL_5_cytosolic_fraction	chr19	49014389	49014429	49014389	+	RAMPAGE_only	27	37	179	5.682788	5.462186	chr19	49014137	49014433	LINE|L2|L2b	-	chr19	48999318	49015894	RUVBL2|ENST00000594338.1	+	48999318,49003278,49004276,49007017,49007301,49009775,49009972,49010998,49011191,49014483,49015020,49015571,49015816	48999373,49003334,49004418,49007147,49007368,49009882,49010611,49011093,49011310,49014603,49015150,49015686,49015894	0.675978
SK_MEL_5_cytosolic_fraction	chr1	156125345	156125375	156125374	+	High_confidence	5	5	11	0.349222	2.921928	chr1	156125405	156125702	SINE|Alu|AluSx1	+	chr1	156126116	156137866	LMNA|NM_001282624.1	+	156126116,156126735,156130616,156134402,156134804,156135186,156135900,156136213,156136920,156137112,156137653	156126223,156126915,156130773,156134528,156134975,156135312,156136121,156136436,156137028,156137232,156137866	0.636364
SK_MEL_5_cytosolic_fraction	chr2	81481734	81481754	81481735	+	High_confidence	116	233	447	14.191095	7.545819	chr2	81481147	81482372	LTR|ERV1|LTR2752	-	chr2	81481731	81570574	MSTRG.16712.1	+	81481731,81548617,81570321	81482104,81548747,81570574	0.592841
SK_MEL_5_cytosolic_fraction	chr7	54759955	54759974	54759973	-	High_confidence	14	16	24	0.761938	3.913977	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.750000
SK_MEL_5_cytosolic_fraction	chr8	32927967	32927984	32927976	+	High_confidence	1227	1310	2335	74.130218	6.947926	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927975	33050067	MSTRG.27874.4	+	32927975,33041634,33044366	32928093,33041743,33050067	0.964454
SK_MEL_5_cytosolic_fraction	chr12	104030726	104030727	104030726	+	High_confidence	49	50	69	2.190572	5.191027	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.927536
SK_MEL_5_cytosolic_fraction	chr7	2242922	2242923	2242922	+	High_confidence	117	117	119	3.777943	6.233362	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.974790
SK_MEL_5_cytosolic_fraction	chr20	36474834	36474849	36474834	+	RAMPAGE_only	5	5	20	0.634948	3.787144	chr20	36474811	36475008	LINE|L2|L2b	-	chr20	36473118	36500270	DLGAP4|ENST00000479220.5	+	36473118,36496704,36499587,36500198	36473172,36497066,36499676,36500270	0.550000
SK_MEL_5_cytosolic_fraction	chr20	18413247	18413280	18413261	-	High_confidence	3	4	20	0.634948	3.446439	chr20	18413239	18413452	DNA|hAT-Tip100|MER91B	+	chr20	18393713	18413222	DZANK1|ENST00000480488.2	-	18393713,18394253,18396471,18398522,18412645,18412967	18393811,18394350,18396546,18398626,18412853,18413222	0.950000
SK_MEL_5_cytosolic_fraction	chr20	16713221	16713222	16713221	+	RAMPAGE_only	22	24	25	0.793685	4.453661	chr20	16713039	16713432	LTR|ERVL-MaLR|MLT1B	+	chr20	16729960	16741776	SNRPB2|ENST00000377943.9	+	16729960,16731667,16732163,16737260,16738851,16740324,16740845	16730064,16731766,16732336,16737401,16738902,16740413,16741776	0.840000
SK_MEL_5_cytosolic_fraction	chr9	114626875	114626915	114626885	+	RAMPAGE_only	4	4	18	0.571453	3.725481	chr9	114626723	114626887	LINE|CR1|L3	-	chr9	114611425	114646423	C9orf91|NM_153045.3	+	114611425,114617117,114624349,114626898,114628100,114633767,114636989,114638543,114643133	114611564,114617301,114624459,114627006,114628250,114633878,114637070,114638726,114646423	0.944444
SK_MEL_5_cytosolic_fraction	chr8	12796296	12796305	12796297	-	High_confidence	3	6	9	0.285727	2.503258	chr8	12796147	12797467	LTR|ERV1|LTR12C	+	chr8	12766051	12796446	MSTRG.27689.2	-	12766051,12767729,12778253,12788331,12796136	12766595,12767849,12778356,12788444,12796446	0.777778
SK_MEL_5_cytosolic_fraction	chr14	83638967	83638976	83638971	+	High_confidence	7	9	27	0.857180	4.053661	chr14	83638774	83639162	LTR|ERVL-MaLR|THE1D	+	chr14	83638959	83658709	MSTRG.8847.1	+	83638959,83639299,83646543,83658422	83639082,83639395,83646654,83658709	0.740741
SK_MEL_5_cytosolic_fraction	chr14	102246188	102246242	102246218	-	High_confidence	62	72	348	11.048101	6.815451	chr14	102246199	102246391	LTR|ERV1|HERVFH21-int	+	chr14	102229119	102246159	MOK|ENST00000519058.5	-	102229119,102232534,102233687,102246056	102229657,102232708,102233789,102246159	0.701149
SK_MEL_5_cytosolic_fraction	chr2	45192665	45192666	45192665	-	RAMPAGE_only	21	23	29	0.920675	4.664498	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	0.689655
SK_MEL_5_cytosolic_fraction	chr5	9265514	9265549	9265523	-	High_confidence	4	5	26	0.825433	3.907268	chr5	9265168	9265679	LTR|ERVL|LTR53	+	chr5	9202123	9265545	SEMA5A|ENST00000514923.4	-	9202123,9224673,9226868,9237827,9265433	9202240,9224887,9226967,9237890,9265545	0.653846
SK_MEL_5_cytosolic_fraction	chr7	104803116	104803127	104803126	-	High_confidence	17	17	34	1.079412	4.741364	chr7	104802722	104803154	LINE|L2|L2	+	chr7	104738597	104803539	MSTRG.26989.4	-	104738597,104744049,104752714,104759702,104761473,104785219,104785730,104798336,104799817,104802838,104803451	104738955,104744180,104752791,104759822,104761580,104785378,104785785,104798407,104800069,104802963,104803539	0.794118
SK_MEL_5_cytosolic_fraction	chr5	997318	997343	997318	-	High_confidence	17	17	81	2.571541	5.495245	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.962963
SK_MEL_5_cytosolic_fraction	chr15	85330227	85330278	85330258	-	RAMPAGE_only	9	10	39	1.238149	4.864727	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.692308
SK_MEL_5_cytosolic_fraction	chr10	101653603	101653657	101653656	-	High_confidence	21	21	57	1.809603	5.208410	chr10	101653453	101653821	LINE|L2|L2c	+	chr10	101610663	101653743	MSTRG.3829.1	-	101610663,101611627,101612336,101624744,101653476	101611410,101611769,101612477,101624810,101653743	0.859649
SK_MEL_5_cytosolic_fraction	chr12	1166314	1166317	1166314	+	RAMPAGE_only	6	6	12	0.380969	3.418296	chr12	1166120	1166479	LTR|ERVL-MaLR|THE1B	+	chr12	1083572	1244956	ERC1|ENST00000536573.6	+	1083572,1104749,1110191,1112214,1115865,1141619,1180539,1181924,1183280,1189858,1236768,1244542	1083580,1104824,1110347,1112307,1116033,1141787,1180677,1182065,1183421,1190052,1236904,1244956	0.916667
SK_MEL_5_cytosolic_fraction	chr15	69080874	69080891	69080890	+	High_confidence	6	7	25	0.793685	4.262692	chr15	69080204	69081232	LINE|L1|L1M7	-	chr15	69080861	69095807	EWSAT1|ENST00000440444.1	+	69080861,69090914,69091691,69094700	69081376,69091114,69092367,69095807	0.920000
SK_MEL_5_cytosolic_fraction	chr17	18917428	18917440	18917429	+	RAMPAGE_only	13	18	37	1.174654	4.197160	chr17	18917394	18917546	SINE|Alu|AluSz	-	chr17	18928267	18931268	PRPSAP2|ENST00000466106.1	+	18928267,18930539	18928957,18931268	0.918919
SK_MEL_5_cytosolic_fraction	chr18	74567000	74567001	74567000	-	RAMPAGE_only	11	14	14	0.444464	3.238901	chr18	74566850	74567194	LTR|ERVL-MaLR|THE1A	-	chr18	74561380	74562100	AC009704.1|ENST00000583702.1	-	74561380,74561996	74561607,74562100	0.714286
SK_MEL_5_cytosolic_fraction	chr1	150729911	150729961	150729953	-	RAMPAGE_only	5	6	20	0.634948	3.997670	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150698058	150720888	HORMAD1|NM_032132.4	-	150698058,150700111,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150714614,150717137,150719472,150720803	150698734,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150714678,150717282,150719538,150720888	0.850000
SK_MEL_5_cytosolic_fraction	chr22	50757115	50757147	50757115	+	High_confidence	2	2	17	0.539706	3.875000	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.529412
SK_MEL_5_cytosolic_fraction	chr20	25199652	25199687	25199652	+	RAMPAGE_only	11	11	52	1.650866	3.603373	chr20	25199486	25200499	LINE|L1|L1MB3	-	chr20	25195912	25228075	ENTPD6|NM_001322389.1	+	25195912,25207075,25209848,25213262,25214866,25215675,25216647,25217501,25218549,25222837,25224100,25225204,25225498	25196254,25207397,25209925,25213406,25214942,25215711,25216736,25217581,25218614,25222978,25224157,25225317,25228075	1.000000
SK_MEL_5_cytosolic_fraction	chr5	111338741	111338745	111338741	+	RAMPAGE_only	4	4	9	0.285727	2.750000	chr5	111338402	111339049	LINE|L1|L1P4	-	chr5	111357960	111473324	CAMK4|ENST00000502916.5	+	111357960,111374849,111376859,111394709,111446685,111449128,111473310	111358124,111374912,111376942,111394782,111446776,111449203,111473324	0.666667
SK_MEL_5_cytosolic_fraction	chr18	4496449	4496500	4496471	-	RAMPAGE_only	9	10	33	1.047665	3.945465	chr18	4496439	4496787	LTR|ERVL-MaLR|MLT1I	+	chr18	4493143	4493559	MSTRG.13797.1	-	4493143	4493559	0.818182
SK_MEL_5_cytosolic_fraction	chr17	58032851	58032871	58032851	+	RAMPAGE_only	7	7	21	0.666696	4.084184	chr17	58032879	58033257	DNA|hAT-Tip100|Zaphod	+	chr17	58083414	58095536	DYNLL2|ENST00000579991.2	+	58083414,58087081,58089141	58083683,58087222,58095536	0.523810
SK_MEL_5_cytosolic_fraction	chr2	71417078	71417126	71417125	+	RAMPAGE_only	3	3	13	0.412716	3.418296	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.923077
SK_MEL_5_cytosolic_fraction	chr22	18149863	18149871	18149868	+	High_confidence	24	24	52	1.650866	4.736175	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.942308
SK_MEL_5_cytosolic_fraction	chr7	101217534	101217573	101217572	+	High_confidence	7	7	29	0.920675	4.086790	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101217667	101224190	ZNHIT1|ENST00000305105.2	+	101217667,101222603,101223476,101223672,101223936	101218217,101222774,101223556,101223842,101224190	0.965517
SK_MEL_5_cytosolic_fraction	chr12	10363706	10363708	10363706	+	High_confidence	18	21	28	0.888928	4.103910	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363714	10379767	MSTRG.5926.1	+	10363714,10370378,10373040,10374034,10379701	10364033,10370452,10373137,10374136,10379767	0.857143
SK_MEL_5_cytosolic_fraction	chr12	21214621	21214632	21214631	+	RAMPAGE_only	6	6	19	0.603201	4.142664	chr12	21209060	21215087	LINE|L1|L1PA2	-	chr12	21131201	21239246	SLCO1B1|ENST00000256958.2	+	21131201,21141513,21172649,21174576,21176775,21178575,21178921,21196945,21200507,21202490,21205867,21217118,21222299,21224721,21238978	21131236,21141658,21172791,21174709,21176897,21178722,21179020,21197188,21200672,21202686,21206033,21217303,21222364,21224839,21239246	0.526316
SK_MEL_5_cytosolic_fraction	chr2	144924964	144924981	144924980	+	RAMPAGE_only	14	17	48	1.523876	4.985412	chr2	144924876	144925277	LTR|ERVL-MaLR|MLT1F2	+	chr2	145023227	145182430	TEX41|ENST00000629460.2	+	145023227,145072523,145171997,145182203	145023273,145072823,145172131,145182430	0.520833
SK_MEL_5_cytosolic_fraction	chr13	94515580	94515601	94515580	-	RAMPAGE_only	3	3	16	0.507959	3.625000	chr13	94515561	94515630	LTR|ERVL|LTR33B	-	chr13	94437303	94549413	DCT|NM_001322186.1	-	94437303,94443435,94460090,94462009,94465632,94466557,94468745,94504910,94505512,94549169	94440076,94443637,94460226,94462189,94465799,94466658,94469045,94505072,94505619,94549413	0.812500
SK_MEL_5_cytosolic_fraction	chr2	9114922	9114925	9114922	+	High_confidence	27	29	50	1.587371	5.288179	chr2	9114748	9115100	LTR|ERVL-MaLR|THE1B	+	chr2	9115196	9116884	AC093904.3|ENST00000492300.1	+	9115196,9116572	9115252,9116884	0.840000
SK_MEL_5_cytosolic_fraction	chr4	39544055	39544056	39544055	-	High_confidence	455	464	502	15.937203	6.131772	chr4	39543948	39544368	LTR|ERVK|LTR3B	-	chr4	39539318	39544097	MSTRG.21984.1	-	39539318,39543823	39539775,39544097	0.984064
SK_MEL_5_cytosolic_fraction	chr8	62164779	62164816	62164815	-	High_confidence	228	236	711	22.572413	6.201015	chr8	62164702	62165238	LINE|L1|L1PB1	+	chr8	62133347	62164805	MSTRG.28061.1	-	62133347,62164568	62135746,62164805	0.843882
SK_MEL_5_cytosolic_fraction	chr6	30766797	30766832	30766797	+	High_confidence	23	24	93	2.952510	4.989148	chr6	30766416	30766818	LTR|ERVL|LTR16A1	-	chr6	30766824	30792250	HCG20|ENST00000439406.5	+	30766824,30788690,30790888,30791425	30766951,30788872,30790956,30792250	0.935484
SK_MEL_5_cytosolic_fraction	chr3	122745575	122745598	122745575	-	High_confidence	23	28	121	3.841437	4.031837	chr3	122745410	122746106	DNA|TcMar-Tigger|MER44C	+	chr3	122740002	122745570	MSTRG.20948.1	-	122740002,122741002,122745383	122740875,122741113,122745570	0.983471
SK_MEL_5_cytosolic_fraction	chr1	225473571	225473572	225473571	-	RAMPAGE_only	35	35	36	1.142907	4.764858	chr1	225472522	225473899	LTR|ERV1|LTR12C	+	chr1	225447990	225465283	MSTRG.2708.2	-	225447990,225452131,225461540,225462393,225465222	225450678,225452277,225461729,225462493,225465283	0.944444
SK_MEL_5_cytosolic_fraction	chr11	74929736	74929755	74929736	-	RAMPAGE_only	3	4	8	0.253979	2.521641	chr11	74929615	74929915	LINE|L2|L2c	+	chr11	74842967	74949116	XRRA1|ENST00000527087.5	-	74842967,74844167,74845072,74848114,74851087,74906238,74907144,74921213,74927390,74930299,74933824,74936883,74940784,74945017,74948927	74843453,74844283,74845271,74848462,74851203,74906456,74907273,74921347,74927488,74930372,74933872,74937068,74940882,74945085,74949116	0.875000
SK_MEL_5_cytosolic_fraction	chr1	39026182	39026211	39026190	+	High_confidence	5	7	30	0.952422	4.094740	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.966667
SK_MEL_5_cytosolic_fraction	chr5	12574736	12574746	12574736	-	High_confidence	9	9	21	0.666696	3.975418	chr5	12573943	12575033	LTR|ERV1|LTR12C	-	chr5	12562341	12574637	MSTRG.23002.3	-	12562341,12571815,12574503	12567227,12571904,12574637	0.857143
SK_MEL_5_cytosolic_fraction	chr4	47952947	47952957	47952947	-	High_confidence	18	20	31	0.984170	4.567100	chr4	47952778	47953143	LTR|ERVL-MaLR|THE1B	-	chr4	47942916	47952689	CNGA1|ENST00000506118.1	-	47942916,47943370,47949832,47951352,47952582	47943288,47943412,47949895,47951469,47952689	0.967742
SK_MEL_5_cytosolic_fraction	chr10	97634108	97634118	97634108	-	High_confidence	2	2	7	0.222232	2.521641	chr10	97634006	97634308	SINE|Alu|AluJo	+	chr10	97614552	97634156	MORN4|NM_001098831.1	-	97614552,97616677,97617207,97619586,97634004	97616411,97616787,97617322,97619683,97634156	0.714286
SK_MEL_5_cytosolic_fraction	chr9	83026489	83026490	83026489	-	RAMPAGE_only	9	10	12	0.380969	3.188722	chr9	83026313	83026686	LTR|ERVL-MaLR|THE1D	-	chr9	82979584	83063128	RASEF|NM_152573.3	-	82979584,82990390,82992905,82997011,82998364,83000168,83000432,83000895,83004497,83005415,83007436,83009640,83012433,83015804,83022335,83025774,83062436	82982782,82990467,82993025,82997126,82998446,83000316,83000570,83001130,83004586,83005500,83007505,83009756,83012511,83015900,83022426,83025921,83063128	1.000000
SK_MEL_5_cytosolic_fraction	chr11	46927311	46927312	46927311	+	High_confidence	7	7	8	0.253979	2.521641	chr11	46927128	46927471	LTR|ERVL-MaLR|THE1A	+	chr11	46927336	47161911	MSTRG.4665.2	+	46927336,46987207,47052387,47137315,47137644,47155175,47157022,47157812,47161126,47161445	46927395,46987310,47052518,47137560,47137729,47155261,47157218,47157922,47161190,47161911	0.625000
SK_MEL_5_cytosolic_fraction	chr1	116390216	116390395	116390289	+	RAMPAGE_only	7	8	103	3.269984	5.318219	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
SK_MEL_5_cytosolic_fraction	chr11	65181222	65181240	65181222	+	High_confidence	1	1	8	0.253979	2.807355	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.875000
SK_MEL_5_cytosolic_fraction	chr4	142560709	142560755	142560709	-	High_confidence	75	76	202	6.412978	6.056852	chr4	142560371	142560916	LTR|ERVL|MLT2B3	-	chr4	142086178	142560669	INPP4B|ENST00000510812.5	-	142086178,142108092,142112541,142122127,142123291,142124587,142145839,142160357,142173631,142193086,142208424,142208895,142237863,142260491,142270662,142305457,142314711,142402937,142405205,142429172,142431168,142462662,142560456	142086256,142108190,142112682,142122245,142123415,142124760,142145996,142160561,142173809,142193195,142208529,142209026,142238011,142260564,142270774,142305537,142314762,142403054,142405324,142429217,142431385,142462726,142560669	0.806931
SK_MEL_5_cytosolic_fraction	chr22	36481307	36481353	36481334	-	High_confidence	12	15	75	2.381056	4.652692	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.813333
SK_MEL_5_cytosolic_fraction	chr12	127060416	127060418	127060416	-	High_confidence	4	8	9	0.285727	2.725481	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	126975838	127060401	LINC02405|ENST00000540244.5	-	126975838,127000555,127031866,127060086	126975917,127000650,127032066,127060401	0.666667
SK_MEL_5_cytosolic_fraction	chr4	166198270	166198290	166198270	+	High_confidence	35	41	159	5.047839	5.738551	chr4	166198159	166198478	LTR|ERV1|MER61A	+	chr4	166198284	166320023	MSTRG.22744.1	+	166198284,166198943,166319993	166198511,166199013,166320023	0.553459
SK_MEL_5_cytosolic_fraction	chr15	42404759	42404848	42404759	+	High_confidence	2301	2525	12277	389.763033	7.868995	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404778	42412317	CAPN3|NM_173090.1	+	42404778,42405925,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42405943,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412317	0.913334
SK_MEL_5_cytosolic_fraction	chr7	107580245	107580267	107580264	+	High_confidence	4713	4723	20997	666.600505	7.391325	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.892080
SK_MEL_5_cytosolic_fraction	chr17	61245265	61245328	61245327	+	High_confidence	66	121	574	18.223017	6.873374	chr17	61244998	61245371	LTR|ERVL-MaLR|THE1C	-	chr17	61245259	61392273	BCAS3|ENST00000588569.1	+	61245259,61354361,61368326,61380505,61388617,61391976	61245371,61354502,61368494,61380571,61388708,61392273	0.797909
SK_MEL_5_cytosolic_fraction	chr12	26919065	26919072	26919070	-	RAMPAGE_only	16	44	75	2.381056	5.496136	chr12	26918889	26919198	SINE|Alu|AluJr	+	chr12	26905178	26938321	ASUN|NM_018164.2	-	26905178,26906301,26911177,26913456,26913973,26914407,26916001,26917351,26917643,26922615,26924354,26925760,26928204,26928702,26934555,26936578,26937795	26905536,26906437,26911317,26913687,26914128,26914578,26916180,26917441,26917733,26922700,26924483,26925851,26928285,26928905,26934630,26936814,26938321	0.573333
SK_MEL_5_cytosolic_fraction	chr22	42946002	42946003	42946002	-	High_confidence	6	6	9	0.285727	2.725481	chr22	42945931	42946086	LINE|L2|L2c	+	chr22	42890943	42945873	PACSIN2|ENST00000418133.5	-	42890943,42893456,42912020,42945784	42891182,42893613,42912157,42945873	0.555556
SK_MEL_5_cytosolic_fraction	chr6	5622554	5622596	5622586	+	RAMPAGE_only	6	11	34	1.079412	4.366681	chr6	5622419	5622836	LTR|ERVL-MaLR|MLT1A1	+	chr6	5261525	5771580	FARS2|ENST00000274680.8	+	5261525,5368549,5404541,5431040,5545179,5613168,5771290	5261660,5369182,5404701,5431172,5545340,5613320,5771580	0.823529
SK_MEL_5_cytosolic_fraction	chr14	63974371	63974397	63974371	+	RAMPAGE_only	5	7	26	0.825433	3.262683	chr14	63974232	63974537	LTR|ERVL-MaLR|MSTB1	-	chr14	63909097	64225564	SYNE2|ENST00000554584.5	+	63909097,63940613,63941694,63941884,63942050,63949824,63954718,63961524,63963898,63967708,63976562,63977904,63978851,63980653,63980985,63982629,63983736,63986455,63990410,63990941,63993834,63995043,63996946,63997300,63998218,63998913,64000561,64001933,64002719,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024256,64024911,64025129,64026578,64027483,64029894,64031015,64034493,64047999,64049610,64051556,64055943,64062750,64065431,64070644,64073967,64075944,64078465,64080455,64081442,64087670,64089573,64090865,64093348,64097948,64098746,64101985,64107490,64113340,64119426,64120926,64122011,64125128,64126326,64126597,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64167232,64167494,64168876,64170227,64173898,64174943,64177357,64188549,64188859,64190070,64190601,64190915,64202186,64202800,64208757,64209427,64209950,64211960,64212810,64214193,64216247,64219207,64220436,64221575,64223188,64224460,64224982,64225318	63909227,63940675,63941790,63941962,63942143,63950006,63954915,63961625,63964000,63967846,63976727,63978017,63979014,63980732,63981173,63982794,63983886,63986617,63990569,63991115,63993969,63995202,63997158,63997391,63998328,63999040,64000719,64002081,64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64022863,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64034592,64048155,64049876,64053657,64056266,64062895,64065650,64070910,64074136,64076100,64078606,64080638,64081580,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64125210,64126479,64126807,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64167387,64167639,64168971,64170321,64174009,64175138,64177483,64188708,64189009,64190237,64190614,64191120,64202265,64202963,64208945,64209578,64210124,64212098,64212954,64214470,64216424,64219410,64220637,64221704,64223380,64224547,64225045,64225564	0.846154
SK_MEL_5_cytosolic_fraction	chr22	50756861	50756862	50756861	+	High_confidence	9	10	14	0.444464	3.180833	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.500000
SK_MEL_5_cytosolic_fraction	chr2	74917992	74918071	74918040	+	High_confidence	107	110	277	8.794034	6.739247	chr2	74917679	74918502	LINE|L2|L2a	-	chr2	74918147	74943470	MSTRG.16680.1	+	74918147,74931417,74932660,74938307	74918459,74931536,74932790,74943470	0.949458
SK_MEL_5_cytosolic_fraction	chr13	45379794	45379805	45379801	+	High_confidence	17	21	51	1.619118	4.930837	chr13	45379416	45380004	LTR|ERV1|HERVE-int	-	chr13	45379283	45391157	TPT1-AS1|ENST00000519454.5	+	45379283,45379925,45383090,45383759,45389734,45390757,45391031	45379335,45380001,45383235,45383838,45389820,45390902,45391157	0.784314
SK_MEL_5_cytosolic_fraction	chr12	118172459	118172465	118172459	-	RAMPAGE_only	1	2	7	0.222232	2.584963	chr12	118172293	118172417	LINE|L2|L2b	-	chr12	118149941	118160358	TAOK3|ENST00000543709.5	-	118149941,118151093,118152226,118160145	118150077,118151158,118152409,118160358	0.571429
SK_MEL_5_cytosolic_fraction	chr2	201115961	201116008	201115987	+	High_confidence	5	5	30	0.952422	4.444188	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.966667
SK_MEL_5_cytosolic_fraction	chr14	50766307	50766358	50766337	-	High_confidence	2	3	13	0.412716	3.334679	chr14	50766057	50766321	SINE|MIR|MIR	-	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
SK_MEL_5_cytosolic_fraction	chr19	44914321	44914322	44914321	+	High_confidence	39	39	52	1.650866	4.962660	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.942308
SK_MEL_5_cytosolic_fraction	chr20	18411896	18411904	18411903	-	RAMPAGE_only	6	6	15	0.476211	3.521641	chr20	18411721	18412097	LTR|ERVL-MaLR|MLT1A1	-	chr20	18383366	18394703	DZANK1|ENST00000476058.5	-	18383366,18385015,18389700,18390378,18393710,18394253,18394674	18384564,18385090,18389828,18390459,18393811,18394350,18394703	0.933333
SK_MEL_5_cytosolic_fraction	chr6	48428956	48428957	48428956	-	High_confidence	11	11	15	0.476211	3.106891	chr6	48428751	48428926	SINE|MIR|MIRc	-	chr6	48425156	48429103	MSTRG.25164.1	-	48425156,48428794	48425594,48429103	1.000000
SK_MEL_5_cytosolic_fraction	chr11	90489263	90489317	90489263	+	RAMPAGE_only	214	219	823	26.128124	7.022450	chr11	90489082	90489436	LTR|ERVL-MaLR|THE1B	+	chr11	90491720	90863696	MSTRG.5332.6	+	90491720,90546753,90801765,90844879,90852615,90857471	90491789,90546895,90801862,90844949,90852707,90863696	0.516403
SK_MEL_5_cytosolic_fraction	chr5	29395988	29396031	29395988	-	High_confidence	19	19	100	3.174742	5.571503	chr5	29394634	29396044	LTR|ERV1|HERVFH21-int	+	chr5	29380069	29395976	LOC101929681|NR_104628.1	-	29380069,29381852,29384319,29389810,29395853	29380325,29381962,29384392,29389939,29395976	0.720000
SK_MEL_5_cytosolic_fraction	chr17	35267866	35267911	35267866	+	RAMPAGE_only	2	2	15	0.476211	3.456565	chr17	35267749	35268438	LINE|L1|HAL1b	+	chr17	35243035	35273655	SLFN5|ENST00000299977.8	+	35243035,35258650,35260970,35264182,35265071	35243143,35259702,35261096,35264903,35273655	1.000000
SK_MEL_5_cytosolic_fraction	chr7	134432378	134432436	134432435	-	High_confidence	36	45	214	6.793947	5.786347	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.939252
SK_MEL_5_cytosolic_fraction	chr6	138689949	138689976	138689949	+	High_confidence	2	2	10	0.317474	2.947703	chr6	138689976	138690152	SINE|MIR|MIR3	+	chr6	138690084	138697288	MSTRG.25701.1	+	138690084,138691618,138694392,138696596	138690097,138691956,138694547,138697288	0.500000
SK_MEL_5_cytosolic_fraction	chr8	27786705	27786707	27786705	+	RAMPAGE_only	4	7	8	0.253979	2.807355	chr8	27786585	27786721	DNA|hAT-Charlie|MER112	+	chr8	27774540	27804908	ESCO2|NM_001017420.2	+	27774540,27775498,27776361,27780173,27783999,27787884,27788846,27791962,27792667,27799540,27803305	27774607,27775567,27777169,27780267,27784057,27788002,27788978,27792052,27792811,27799716,27804908	0.875000
SK_MEL_5_cytosolic_fraction	chr12	22477294	22477295	22477294	-	High_confidence	9	9	14	0.444464	3.392747	chr12	22477054	22477335	DNA|hAT-Charlie|MER33	-	chr12	22470896	22477338	C2CD5|ENST00000537643.1	-	22470896,22471398,22471966,22472285,22472743,22474750,22477261	22470911,22471488,22472065,22472347,22472807,22474891,22477338	0.500000
SK_MEL_5_cytosolic_fraction	chr5	149905163	149905194	149905178	-	RAMPAGE_only	4	4	23	0.730191	3.970573	chr5	149904974	149905604	LINE|L2|L2c	+	chr5	149857954	149944793	PDE6A|ENST00000617647.4	-	149857954,149859891,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647,149907311,149914942,149921634,149931027,149944199	149858530,149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149903695,149907378,149915007,149921709,149931168,149944793	0.956522
SK_MEL_5_cytosolic_fraction	chr3	9363405	9363406	9363405	+	High_confidence	7	7	9	0.285727	2.947703	chr3	9363443	9363535	LINE|L2|L2b	+	chr3	9363097	9384870	THUMPD3|ENST00000515662.6	+	9363097,9365015,9366907,9371059,9374515,9377818,9380502,9383198,9384211,9384523	9363728,9365320,9366985,9371536,9374646,9377888,9380618,9383309,9384335,9384870	1.000000
SK_MEL_5_cytosolic_fraction	chr5	33441368	33441415	33441414	+	High_confidence	25	28	100	3.174742	5.868910	chr5	33441307	33441471	SINE|MIR|MIR3	-	chr5	33441380	33448730	TARS|ENST00000506040.1	+	33441380,33445323,33448540	33441864,33445404,33448730	0.780000
SK_MEL_5_cytosolic_fraction	chr8	12796521	12796566	12796565	-	High_confidence	3	3	13	0.412716	3.238901	chr8	12796147	12797467	LTR|ERV1|LTR12C	+	chr8	12766051	12796446	MSTRG.27689.2	-	12766051,12767729,12778253,12788331,12796136	12766595,12767849,12778356,12788444,12796446	0.615385
SK_MEL_5_cytosolic_fraction	chr1	185257341	185257362	185257361	+	RAMPAGE_only	6	6	21	0.666696	4.221928	chr1	185251798	185257805	LINE|L1|L1PA2	-	chr1	185157158	185291781	SWT1|NM_017673.6	+	185157158,185160832,185166571,185168339,185174371,185180390,185181945,185184242,185184742,185190548,185202653,185204699,185206624,185214506,185221848,185231576,185271322,185276603,185290673	185157314,185160925,185166652,185168398,185175113,185180450,185182057,185184344,185184931,185190642,185202799,185204863,185206763,185214655,185222036,185231708,185271389,185276668,185291781	0.952381
SK_MEL_5_cytosolic_fraction	chr11	38593727	38593760	38593736	-	RAMPAGE_only	15	16	67	2.127077	5.413910	chr11	38593474	38593835	LTR|ERVL-MaLR|MLT1A0	-	chr11	38579957	38580267	MSTRG.4582.1	-	38579957	38580267	0.716418
SK_MEL_5_cytosolic_fraction	chr17	69268808	69268850	69268834	-	High_confidence	2	2	16	0.507959	3.773557	chr17	69268468	69268963	LTR|ERVL|LTR105_Mam	+	chr17	69248259	69268874	ABCA5|ENST00000586811.1	-	69248259,69249904,69250471,69251746,69253572,69253793,69254314,69255542,69255732,69256156,69259705,69260337,69261124,69261634,69264734,69267942,69268719	69248317,69249984,69250621,69251866,69253667,69253869,69254490,69255634,69255850,69256283,69259797,69260412,69261259,69261748,69264905,69268056,69268874	0.875000
SK_MEL_5_cytosolic_fraction	chr18	31353995	31353996	31353995	-	High_confidence	25	28	32	1.015917	4.706891	chr18	31347968	31353996	LINE|L1|L1PA2	-	chr18	31343367	31353936	DSG1-AS1|NR_110789.1	-	31343367,31347719,31353899	31343698,31347820,31353936	0.781250
SK_MEL_5_cytosolic_fraction	chr22	32232757	32232768	32232767	-	High_confidence	4	4	8	0.253979	2.500000	chr22	32232728	32232806	LINE|L2|L2c	+	chr22	32214611	32233335	MSTRG.19550.1	-	32214611,32220919,32224266,32225654,32229193,32230967,32232898,32233148	32218725,32221022,32224482,32225823,32229344,32231075,32233034,32233335	1.000000
SK_MEL_5_cytosolic_fraction	chr4	915736	915797	915736	-	High_confidence	6	6	42	1.333391	4.734945	chr4	915667	916056	LINE|L1|L1ME1	+	chr4	904686	915735	GAK|ENST00000511229.5	-	904686,911672,912734,913606,915497	904779,911787,912794,913668,915735	0.928571
SK_MEL_5_cytosolic_fraction	chr11	26597449	26597453	26597452	-	High_confidence	4	4	11	0.349222	2.663533	chr11	26597150	26597675	LTR|ERV1|LTR17	-	chr11	26589429	26597452	MSTRG.4499.1	-	26589429,26597118	26591959,26597452	0.909091
SK_MEL_5_cytosolic_fraction	chr1	17755332	17755366	17755334	+	High_confidence	7	12	33	1.047665	4.244519	chr1	17755152	17755695	LTR|ERVL|LTR41	+	chr1	17755312	17827063	ACTL8|NM_030812.2	+	17755312,17822984,17825766	17755504,17823356,17827063	0.939394
SK_MEL_5_cytosolic_fraction	chr7	30562849	30562850	30562849	-	High_confidence	44	47	56	1.777855	5.365303	chr7	30562659	30563014	LTR|ERVL-MaLR|THE1D	-	chr7	30516308	30562825	GARS-DT|ENST00000434399.5	-	30516308,30524366,30550635,30561465,30562741	30516512,30524486,30550781,30562128,30562825	0.750000
SK_MEL_5_cytosolic_fraction	chr10	88545429	88545492	88545491	-	High_confidence	283	294	1086	34.477694	7.039597	chr10	88545305	88545664	LTR|ERVL-MaLR|THE1B	-	chr10	88284958	88545555	MSTRG.3661.4	-	88284958,88309386,88314465,88362551,88545456	88285506,88309476,88314641,88362725,88545555	0.912523
SK_MEL_5_cytosolic_fraction	chr5	160436830	160436831	160436830	+	High_confidence	193	242	249	7.905107	5.994308	chr5	160436638	160437010	LTR|ERVL-MaLR|THE1C	+	chr5	160436806	160437648	MSTRG.24253.1	+	160436806,160437040	160436928,160437648	0.791165
SK_MEL_5_cytosolic_fraction	chr5	172093429	172093442	172093441	-	RAMPAGE_only	4	4	9	0.285727	2.947703	chr5	172093338	172093392	DNA|hAT-Ac|OldhAT1	-	chr5	172042069	172188342	STK10|NM_005990.3	-	172042069,172052928,172054568,172055587,172057348,172061138,172064719,172082325,172082960,172090231,172093411,172096425,172105655,172106619,172107779,172117480,172127372,172156623,172187886	172045022,172053042,172054694,172055776,172057473,172061268,172064812,172082505,172083084,172090362,172093960,172096560,172105737,172106814,172107852,172117630,172127421,172156788,172188342	1.000000
SK_MEL_5_cytosolic_fraction	chr2	216107459	216107462	216107459	+	High_confidence	2	3	7	0.222232	2.584963	chr2	216107336	216107624	SINE|Alu|AluJo	+	chr2	216107463	216206303	XRCC5|ENST00000392133.7	+	216107463,216107652,216109090,216113015,216116658,216117745,216119042,216122061,216125916,216127535,216130874,216132324,216137087,216138088,216141185,216148082,216160067,216161978,216190224,216192638,216194918,216204321,216205187	216107532,216107698,216109457,216113129,216116842,216117794,216119165,216122253,216126031,216127674,216130987,216132387,216137225,216138179,216141319,216148276,216160161,216162048,216190334,216192735,216194986,216204396,216206303	0.857143
SK_MEL_5_cytosolic_fraction	chr7	91173440	91173441	91173440	+	RAMPAGE_only	16	16	16	0.507959	3.155639	chr7	91173443	91179517	LINE|L1|L1HS	+	chr7	90709815	91210589	CDK14|ENST00000436577.3	+	90709815,90726566,90790572,90863174,90899290,90917600,90955696,90984147,91045896,91079431,91112541,91118064,91207164	90709957,90726812,90790652,90863269,90899353,90917724,90955817,90984241,91045960,91079480,91112681,91118208,91210589	0.937500
SK_MEL_5_cytosolic_fraction	chr3	171666342	171666343	171666342	-	High_confidence	5	5	7	0.222232	2.584963	chr3	171666174	171666536	LTR|ERVL-MaLR|THE1B	-	chr3	171612278	171666305	PLD1|ENST00000465816.6	-	171612278,171620385,171642839,171644909,171659212,171662059,171666257	171612432,171620520,171642889,171645023,171659301,171662170,171666305	0.571429
SK_MEL_5_cytosolic_fraction	chr11	123060156	123060256	123060174	-	High_confidence	68	71	637	20.223104	5.548250	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.693878
SK_MEL_5_cytosolic_fraction	chrX	135894249	135894340	135894280	+	High_confidence	21	27	150	4.762112	5.293102	chrX	135894101	135894371	SINE|Alu|AluSp	-	chrX	135894124	135913061	MSTRG.30806.6	+	135894124,135896242,135901558,135904476,135905251,135906023,135906410,135906925,135907312,135907700,135908088,135908476,135908863,135909638,135910029,135910414,135911191,135911578,135912320,135912797	135894388,135896329,135901691,135904569,135905392,135906164,135906551,135907066,135907453,135907841,135908229,135908617,135909004,135909779,135910170,135910555,135911332,135911953,135912414,135913061	0.986667
SK_MEL_5_cytosolic_fraction	chr14	27673224	27673240	27673239	-	High_confidence	4	5	11	0.349222	2.921928	chr14	27673059	27679095	LINE|L1|L1PA3	+	chr14	27321921	27673221	AL390334.1|ENST00000556890.1	-	27321921,27656337,27673028	27322141,27656502,27673221	0.636364
SK_MEL_5_cytosolic_fraction	chr21	45593653	45593676	45593653	+	High_confidence	8	10	22	0.698443	3.844233	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	0.954545
SK_MEL_5_cytosolic_fraction	chr17	17686042	17686057	17686056	+	High_confidence	7	8	15	0.476211	3.906891	chr17	17685599	17686175	LINE|L2|L2b	+	chr17	17686067	17810689	MSTRG.12278.5	+	17686067,17724027,17792932,17803755,17809389,17809969	17686188,17724159,17798513,17803849,17809439,17810689	0.733333
SK_MEL_5_cytosolic_fraction	chr20	25204664	25204689	25204664	+	RAMPAGE_only	4	5	19	0.603201	3.281036	chr20	25204485	25205009	LINE|L1|L1MB3	-	chr20	25207343	25225317	ENTPD6|ENST00000447877.5	+	25207343,25209848,25213262,25214866,25215675,25216647,25217501,25218549,25222837,25224100,25225204	25207397,25209925,25213406,25214942,25215711,25216736,25217581,25218614,25222978,25224157,25225317	0.894737
SK_MEL_5_cytosolic_fraction	chr2	55615609	55615643	55615642	-	High_confidence	2	2	8	0.253979	2.500000	chr2	55615580	55615882	SINE|Alu|AluSc	+	chr2	55598697	55616617	PPP4R3B|ENST00000470801.1	-	55598697,55603977,55615450,55616517	55599039,55604076,55615506,55616617	0.875000
SK_MEL_5_cytosolic_fraction	chr1	174413898	174413935	174413920	+	RAMPAGE_only	6	6	29	0.920675	4.458591	chr1	174410275	174413996	LINE|L1|L1PA16	-	chr1	174159516	174958182	RABGAP1L|ENST00000251507.8	+	174159516,174219124,174220971,174231144,174241482,174250474,174252479,174272413,174275832,174278612,174304985,174370978,174393994,174637374,174683521,174699524,174702112,174752312,174811831,174957456,174957890	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145,174637488,174683596,174699650,174702256,174752354,174811960,174957549,174958182	0.827586
SK_MEL_5_cytosolic_fraction	chr5	80409725	80409737	80409725	+	RAMPAGE_only	5	5	11	0.349222	2.921928	chr5	80409398	80409750	DNA|hAT-Charlie|Charlie1a	-	chr5	80408025	80479135	ZFYVE16|ENST00000505560.4	+	80408025,80427491,80434108,80436755,80439935,80443122,80445262,80448025,80449590,80450430,80451484,80455691,80456460,80456944,80459413,80472760,80473753,80474662,80477218	80408153,80427545,80434217,80439007,80440032,80443284,80445405,80448404,80449713,80450586,80451709,80455774,80456565,80457092,80459494,80472923,80473859,80474830,80479135	0.636364
SK_MEL_5_cytosolic_fraction	chr11	90491722	90491754	90491746	+	High_confidence	54	57	220	6.984432	6.279266	chr11	90491537	90491872	LTR|ERVL-MaLR|THE1B	+	chr11	90491720	90863696	MSTRG.5332.6	+	90491720,90546753,90801765,90844879,90852615,90857471	90491789,90546895,90801862,90844949,90852707,90863696	0.581818
SK_MEL_5_cytosolic_fraction	chr6	13323950	13323963	13323962	-	RAMPAGE_only	26	30	50	1.587371	4.718563	chr6	13323838	13324041	SINE|MIR|MIRb	+	chr6	13266541	13326912	TBC1D7|ENST00000606214.5	-	13266541,13305061,13306397,13307599,13316570,13320907,13325093,13326786	13267835,13305187,13306527,13307745,13316708,13321095,13325174,13326912	0.920000
SK_MEL_5_cytosolic_fraction	chr1	246417412	246417415	246417412	-	High_confidence	9	9	16	0.507959	3.875000	chr1	246417275	246418033	LTR|ERV1|LTR8B	-	chr1	245749339	246417412	SMYD3|NM_022743.2	-	245749339,245764040,245858495,245863798,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246417295	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246417412	0.937500
SK_MEL_5_cytosolic_fraction	chr8	106060475	106060539	106060475	-	High_confidence	110	111	430	13.651389	7.495448	chr8	106060473	106060807	LTR|ERVL|LTR18A	+	chr8	105784804	106060477	ZFPM2-AS1|ENST00000524045.6	-	105784804,105787066,105787448,105798324,106059080,106060380	105785217,105787221,105787596,105798442,106059136,106060477	0.606977
SK_MEL_5_cytosolic_fraction	chr12	31118999	31119022	31119016	-	High_confidence	26	30	72	2.285814	4.451553	chr12	31118893	31119042	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.847222
SK_MEL_5_cytosolic_fraction	chr4	142631954	142631974	142631954	-	High_confidence	115	118	166	5.270071	5.325279	chr4	142631849	142632229	LTR|ERVL|LTR47B2	-	chr4	142628592	142631947	MSTRG.22604.1	-	142628592,142631908	142630162,142631947	0.843373
SK_MEL_5_cytosolic_fraction	chr6	125219579	125219594	125219593	+	High_confidence	11	11	56	1.777855	4.662016	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219737	125263496	MSTRG.25589.13	+	125219737,125220077,125229117,125248281,125253716,125257097,125262833	125219806,125220193,125229266,125248383,125253755,125257180,125263496	1.000000
SK_MEL_5_cytosolic_fraction	chr2	3822946	3822954	3822953	+	RAMPAGE_only	5	7	9	0.285727	3.169925	chr2	3822772	3823124	LTR|ERVL-MaLR|THE1B	+	chr2	3844183	3847411	DCDC2C|ENST00000451101.1	+	3844183,3847153	3844642,3847411	0.666667
SK_MEL_5_cytosolic_fraction	chr6	132511281	132511329	132511281	-	RAMPAGE_only	6	8	38	1.206402	4.520000	chr6	132511239	132511617	LINE|L2|L2a	+	chr6	132469993	132512771	MSTRG.25626.3	-	132469993,132470573,132471462,132472281,132475592,132503445,132512526	132470047,132470626,132471600,132472375,132475662,132503588,132512771	0.578947
SK_MEL_5_cytosolic_fraction	chr2	105079052	105079097	105079052	+	RAMPAGE_only	11	13	45	1.428634	4.772641	chr2	105078916	105079103	DNA|hAT-Charlie|MER106A	+	chr2	105092097	105099900	MRPS9|ENST00000472220.1	+	105092097,105093529,105097154,105099669	105092569,105093638,105097324,105099900	0.955556
SK_MEL_5_cytosolic_fraction	chr6	48111154	48111194	48111177	-	High_confidence	90	90	470	14.921286	6.360887	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47899608	48111230	MSTRG.25165.2	-	47899608,48008633,48068229,48068952,48111048	47901935,48009114,48068641,48069926,48111230	0.934043
SK_MEL_5_cytosolic_fraction	chr9	39810033	39810094	39810033	-	High_confidence	59	60	147	4.666870	5.217151	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803483	39810063	MSTRG.29082.3	-	39803483,39809485,39809730	39803859,39809615,39810063	0.945578
SK_MEL_5_cytosolic_fraction	chr2	233930069	233930070	233930069	+	High_confidence	4	5	6	0.190484	2.584963	chr2	233929803	233930103	LINE|L1|L1ME3D	-	chr2	233929715	233942989	TRPM8|ENST00000355722.8	+	233929715,233930667,233937306,233938997,233942575	233929750,233930741,233937509,233939175,233942989	0.666667
SK_MEL_5_cytosolic_fraction	chr1	95042501	95042560	95042538	-	RAMPAGE_only	19	27	131	4.158912	5.703111	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94982782	95072945	MSTRG.1396.2	-	94982782,95027128,95041492,95064865,95072762	94983306,95027260,95041612,95065017,95072945	0.847328
SK_MEL_5_cytosolic_fraction	chr10	65570509	65570522	65570509	+	High_confidence	8	8	52	1.650866	4.966370	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.730769
SK_MEL_5_cytosolic_fraction	chr19	48868613	48868666	48868613	-	High_confidence	425	500	2572	81.654355	7.677121	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.977838
SK_MEL_5_cytosolic_fraction	chr13	83496721	83496755	83496721	+	High_confidence	444	561	1064	33.779251	6.887732	chr13	83496525	83496860	LTR|ERVL-MaLR|THE1A	+	chr13	83496665	83519567	MSTRG.7858.2	+	83496665,83497295,83498677,83501026,83509459,83516112	83496804,83497492,83498827,83501141,83509545,83519567	0.890038
SK_MEL_5_cytosolic_fraction	chr7	30562984	30562998	30562991	+	High_confidence	3	3	9	0.285727	3.000000	chr7	30563019	30563431	LINE|CR1|L3	+	chr7	30563041	30578061	MSTRG.26311.1	+	30563041,30568661,30577722	30563498,30568701,30578061	0.666667
SK_MEL_5_cytosolic_fraction	chr19	3542780	3542803	3542780	-	RAMPAGE_only	5	7	19	0.603201	3.794653	chr19	3542471	3542781	SINE|Alu|AluSx1	-	chr19	3538274	3546358	MSTRG.14493.2	-	3538274,3540795,3544808,3546073,3546254	3540367,3544732,3544939,3546168,3546358	0.947368
SK_MEL_5_cytosolic_fraction	chr14	101995285	101995300	101995285	+	RAMPAGE_only	3	4	12	0.380969	3.251629	chr14	101995329	101995627	SINE|Alu|AluY	+	chr14	101964572	102011733	DYNC1H1|ENST00000643684.1	+	101964572,101975711,101979318,101979718,101980363,101983018,101983381,101985686,101987452,101988702,101991526,101994183,101994672,101994985,101995180,101997034,101999988,102000285,102000953,102001144,102001534,102002536,102002791,102004517,102005041,102005887,102007007,102008177,102009842,102010275,102010739	101964947,101975799,101979492,101979974,101980550,101983290,101983609,101986763,101987632,101988852,101991673,101994324,101994849,101995096,101995300,101997274,102000144,102000399,102001064,102001354,102001681,102002703,102002965,102004950,102005236,102006170,102007108,102008337,102010086,102010459,102011733	1.000000
SK_MEL_5_cytosolic_fraction	chr9	62897382	62897431	62897430	+	High_confidence	16	16	30	0.952422	4.706891	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.800000
SK_MEL_5_cytosolic_fraction	chr6	3195732	3195779	3195772	-	High_confidence	108	109	269	8.540055	5.690905	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.947955
SK_MEL_5_cytosolic_fraction	chr22	39874066	39874070	39874066	-	High_confidence	1083	1170	1682	53.399155	7.145137	chr22	39873891	39874245	LTR|ERVL-MaLR|THE1B	-	chr22	39817701	39874055	MSTRG.19688.4	-	39817701,39820992,39835839,39861764,39873974	39818178,39821113,39835958,39862007,39874055	0.574316
SK_MEL_5_cytosolic_fraction	chr11	73652688	73652745	73652688	+	High_confidence	5	5	30	0.952422	4.440224	chr11	73652673	73652766	SINE|MIR|MIR3	-	chr11	73652439	73662812	PLEKHB1|ENST00000426191.2	+	73652439,73660752,73661465	73653014,73660852,73662812	1.000000
SK_MEL_5_cytosolic_fraction	chr11	35918728	35918744	35918728	-	High_confidence	2	2	13	0.412716	3.418296	chr11	35918488	35918915	LTR|ERVL-MaLR|MLT1K	-	chr11	35915050	35918718	AC090692.1|ENST00000531569.1	-	35915050,35918010,35918580	35915349,35918114,35918718	0.692308
SK_MEL_5_cytosolic_fraction	chr12	124366106	124366110	124366106	-	RAMPAGE_only	5	7	14	0.444464	3.085055	chr12	124366015	124366521	LINE|L1|L1MB8	+	chr12	124325419	124388824	MSTRG.7297.8	-	124325419,124326190,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124388684	124325583,124326370,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362297,124363799,124372610,124374463,124378384,124385887,124388824	0.928571
SK_MEL_5_cytosolic_fraction	chr10	17216310	17216311	17216310	-	RAMPAGE_only	5	5	8	0.253979	2.521641	chr10	17216274	17216354	LTR|ERV1|HERVIP10FH-int	+	chr10	17214238	17226898	VIM-AS1|ENST00000437232.5	-	17214238,17216166,17217601,17226855	17215364,17216274,17217675,17226898	0.500000
SK_MEL_5_cytosolic_fraction	chr20	16864352	16864356	16864352	+	RAMPAGE_only	19	20	29	0.920675	3.937193	chr20	16864107	16864582	LTR|ERVL-MaLR|MLT1F1	+	chr20	16873393	16873762	MSTRG.18224.1	+	16873393	16873762	0.620690
SK_MEL_5_cytosolic_fraction	chrX	16712889	16712929	16712889	-	High_confidence	7	8	26	0.825433	4.483856	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.846154
SK_MEL_5_cytosolic_fraction	chrX	97161430	97161454	97161443	+	RAMPAGE_only	4	10	25	0.793685	4.483856	chrX	97161402	97161614	SINE|Alu|AluSx3	-	chrX	96685016	97469765	DIAPH2|ENST00000373054.5	+	96685016,96735757,96738585,96758153,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348117,97383908,97429649,97469693	96685190,96735790,96738762,96758258,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247841,97348280,97384044,97429745,97469765	0.920000
SK_MEL_5_cytosolic_fraction	chr1	167937045	167937065	167937054	-	High_confidence	3	4	10	0.317474	2.721928	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167918067	167937040	MPC2|ENST00000271373.8	-	167918067,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937040	1.000000
SK_MEL_5_cytosolic_fraction	chr17	59892716	59892746	59892716	-	High_confidence	43	45	152	4.825607	6.052948	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.861842
SK_MEL_5_cytosolic_fraction	chr4	32005788	32005863	32005803	-	RAMPAGE_only	5	5	40	1.269897	4.426177	chr4	32005469	32005774	SINE|Alu|AluSg	-	chr4	32003076	32010414	MSTRG.21947.1	-	32003076,32007666,32009751,32010117	32006022,32007713,32009815,32010414	0.950000
SK_MEL_5_cytosolic_fraction	chr17	59619888	59619923	59619894	+	High_confidence	2070	2835	10396	330.046142	5.935615	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.944113
SK_MEL_5_cytosolic_fraction	chr8	18083388	18083408	18083388	-	High_confidence	5	5	10	0.317474	2.947703	chr8	18083239	18083389	SINE|MIR|MIR3	+	chr8	18056458	18083408	ASAH1|ENST00000636691.1	-	18056458,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18067219,18069791,18071299,18075540,18083121	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18064531,18067298,18069878,18071390,18075587,18083408	0.600000
SK_MEL_5_cytosolic_fraction	chr7	104744110	104744177	104744110	-	RAMPAGE_only	2	2	14	0.444464	3.392747	chr7	104743832	104744123	SINE|Alu|AluJb	-	chr7	104738596	104757748	LHFPL3-AS1|ENST00000433514.5	-	104738596,104744049,104752714,104757608	104738984,104744180,104752803,104757748	0.857143
SK_MEL_5_cytosolic_fraction	chr7	47401170	47401219	47401196	-	RAMPAGE_only	16	17	137	4.349396	5.712222	chr7	47401190	47401377	LINE|CR1|L3b	-	chr7	47275136	47403425	MSTRG.26441.1	-	47275136,47280163,47280285,47283696,47291954,47292827,47293732,47297081,47302185,47302949,47304831,47344754,47344923,47346186,47368364,47396799,47400392,47400784,47403267	47278220,47280190,47280354,47283865,47292032,47292905,47293828,47297213,47302272,47303584,47305003,47344838,47345038,47346356,47369621,47396904,47400458,47400914,47403425	0.956204
SK_MEL_5_cytosolic_fraction	chr4	73806538	73806544	73806538	-	RAMPAGE_only	5	7	21	0.666696	3.366091	chr4	73805101	73807113	LINE|L1|L1PA15	+	chr4	73777635	73778060	AC112518.2|ENST00000508565.2	-	73777635	73778060	0.857143
SK_MEL_5_cytosolic_fraction	chr14	46885915	46885977	46885970	-	RAMPAGE_only	4	7	26	0.825433	3.690260	chr14	46885639	46886113	LTR|ERVL|LTR40a	-	chr14	46873333	46882222	MDGA2|ENST00000557516.1	-	46873333,46874044,46882043	46873591,46874200,46882222	0.961538
SK_MEL_5_cytosolic_fraction	chr11	7465834	7465835	7465834	-	High_confidence	23	24	24	0.761938	4.055958	chr11	7465676	7466033	LTR|ERVL-MaLR|THE1A	-	chr11	7437626	7465835	LOC100506258|NR_103855.1	-	7437626,7450372,7457795,7461238,7465752	7441719,7450442,7457959,7461336,7465835	0.708333
SK_MEL_5_cytosolic_fraction	chr3	9377870	9377888	9377887	+	RAMPAGE_only	4	4	8	0.253979	2.750000	chr3	9377910	9378251	LINE|CR1|CR1_Mam	+	chr3	9383179	9384870	THUMPD3|ENST00000464045.1	+	9383179,9384211,9384523	9383309,9384335,9384870	1.000000
SK_MEL_5_cytosolic_fraction	chr3	182440653	182440654	182440653	+	High_confidence	10	10	10	0.317474	3.121928	chr3	182440644	182440715	SINE|MIR|MIR3	+	chr3	182440727	182488879	MSTRG.21472.1	+	182440727,182471133,182478226,182487725	182440885,182471302,182478302,182488879	0.800000
SK_MEL_5_cytosolic_fraction	chr6	169654695	169654723	169654701	-	RAMPAGE_only	5	5	18	0.571453	3.337175	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169457211	169649233	WDR27|ENST00000479310.5	-	169457211,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197	169457634,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649233	0.611111
SK_MEL_5_cytosolic_fraction	chr6	10434312	10434346	10434342	+	High_confidence	24	24	148	4.698618	6.532556	chr6	10434122	10434400	LINE|L2|L2a	-	chr6	10434328	10456781	MIR5689HG|NR_132993.1	+	10434328,10451902,10452747,10456435	10434404,10452056,10452827,10456781	0.614865
SK_MEL_5_cytosolic_fraction	chr7	112452385	112452419	112452385	+	High_confidence	8	8	67	2.127077	4.826752	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112477203	IFRD1|NM_001197079.1	+	112452057,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112452511,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112477203	1.000000
SK_MEL_5_cytosolic_fraction	chr9	114561992	114562002	114561992	+	RAMPAGE_only	2	2	9	0.285727	2.947703	chr9	114561989	114562028	LTR|ERVL-MaLR|MLT1M	-	chr9	114587713	114598872	ATP6V1G1|NM_004888.3	+	114587713,114592551,114597569	114587920,114592652,114598872	0.888889
SK_MEL_5_cytosolic_fraction	chr12	9569109	9569154	9569117	+	High_confidence	94	96	446	14.159348	3.765184	chr12	9568603	9569205	LTR|ERV1|HERVE-int	-	chr12	9569102	9576268	MSTRG.5920.8	+	9569102,9570762,9571460,9573002,9573465,9574846,9575642	9569202,9570892,9571573,9573093,9573534,9574949,9576268	0.997758
SK_MEL_5_cytosolic_fraction	chr7	8351719	8351725	8351719	+	RAMPAGE_only	21	29	50	1.587371	5.011828	chr7	8351723	8353975	LINE|L1|L1HS	+	chr7	8353672	8355432	MSTRG.26113.1	+	8353672	8355432	0.580000
SK_MEL_5_cytosolic_fraction	chr4	3544580	3544624	3544613	+	High_confidence	4	7	29	0.920675	3.978334	chr4	3544561	3544648	SINE|MIR|MIRb	-	chr4	3544554	3548588	AL590235.1|ENST00000602641.5	+	3544554,3545094,3548460	3544923,3545229,3548588	0.724138
SK_MEL_5_cytosolic_fraction	chr9	121313938	121314023	121314020	+	RAMPAGE_only	6	7	27	0.857180	3.782122	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
SK_MEL_5_cytosolic_fraction	chr7	104804266	104804302	104804301	-	High_confidence	7	7	21	0.666696	4.021928	chr7	104804006	104804386	LTR|ERVL-MaLR|MLT1K	-	chr7	104796515	104804107	LHFPL3-AS1|ENST00000434579.6	-	104796515,104798336,104799817,104802838,104803955	104796949,104798407,104800069,104802963,104804107	0.809524
SK_MEL_5_cytosolic_fraction	chr5	81602059	81602083	81602059	-	RAMPAGE_only	3	3	9	0.285727	2.500000	chr5	81601657	81603037	LTR|ERVL-MaLR|MLT1G-int	-	chr5	81419935	81513717	SSBP2|ENST00000504985.5	-	81419935,81428584,81437429,81440557,81442652,81446867,81448789,81461054,81466973,81473699,81474495,81489249,81513627	81420533,81428683,81437458,81440636,81442723,81446922,81448825,81461103,81467065,81473770,81474562,81489309,81513717	0.555556
SK_MEL_5_cytosolic_fraction	chr9	128684459	128684493	128684479	-	RAMPAGE_only	8	8	47	1.492129	4.335971	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.787234
SK_MEL_5_cytosolic_fraction	chr1	16981613	16981637	16981613	-	High_confidence	2	3	12	0.380969	3.022055	chr1	16981567	16981905	LTR|ERV1|LTR64	+	chr1	16974501	16981586	MFAP2|NM_001135247.1	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16981513	16975023,16975342,16975730,16976545,16976794,16976923,16977195,16978314,16981586	1.000000
SK_MEL_5_cytosolic_fraction	chr22	30777414	30777415	30777414	+	RAMPAGE_only	6	7	8	0.253979	3.000000	chr22	30777233	30777578	LTR|ERVL-MaLR|THE1B	+	chr22	30764252	30907824	OSBP2|NM_001282740.1	+	30764252,30870428,30887425,30888222,30889179,30889489,30890727,30893121,30893462,30893637,30893816,30905836,30906196	30764392,30870682,30887618,30888340,30889234,30889636,30890973,30893242,30893566,30893733,30894001,30906069,30907824	0.750000
SK_MEL_5_cytosolic_fraction	chr4	15817765	15817767	15817765	+	RAMPAGE_only	13	19	23	0.730191	4.027169	chr4	15817764	15819003	LINE|L1|L1PA10	+	chr4	15778277	15853230	CD38|ENST00000226279.7	+	15778277,15816510,15824880,15834216,15838091,15840025,15840451,15848538	15778647,15816640,15825016,15834302,15838165,15840118,15840538,15853230	0.913043
SK_MEL_5_cytosolic_fraction	chr17	1115399	1115400	1115399	-	High_confidence	6	6	9	0.285727	2.725481	chr17	1115307	1115433	LINE|L2|L2b	+	chr17	1072732	1115436	ABR|ENST00000570441.5	-	1072732,1073624,1079329,1083519,1091664,1100636,1115275	1072754,1073677,1079390,1083627,1091850,1100735,1115436	0.888889
SK_MEL_5_cytosolic_fraction	chr6	73774499	73774513	73774499	+	RAMPAGE_only	2	2	6	0.190484	2.584963	chr6	73774396	73774938	LINE|L1|L1MEh	-	chr6	73722940	73810172	CD109|ENST00000649530.1	+	73722940,73723250,73730343,73736382,73756642,73758943,73762383,73762740,73763575,73765929,73766758,73766947,73768054,73771428,73780423,73781258,73782613,73783706,73785363,73787233,73788467,73792625,73803219,73806843,73808082,73809983	73723159,73723279,73730574,73736508,73756682,73759028,73762480,73762882,73763685,73766154,73766860,73767010,73768231,73771581,73780498,73781319,73782755,73783824,73785477,73787452,73788612,73792802,73803301,73807072,73808248,73810172	0.833333
SK_MEL_5_cytosolic_fraction	chrX	135893604	135893722	135893705	+	High_confidence	71	72	427	13.556147	6.240464	chrX	135893573	135893804	LTR|ERVL|LTR41	-	chrX	135893633	135913061	SAGE1|NM_018666.2	+	135893633,135896242,135901558,135904476,135905251,135906023,135906410,135906925,135907312,135907700,135908088,135908476,135908863,135909638,135910029,135910414,135911191,135911578,135912320,135912797	135893800,135896329,135901691,135904569,135905392,135906164,135906551,135907066,135907453,135907841,135908229,135908617,135909004,135909779,135910170,135910555,135911332,135911953,135912414,135913061	0.995316
SK_MEL_5_cytosolic_fraction	chr20	8114452	8114526	8114472	+	High_confidence	19	21	197	6.254241	6.051734	chr20	8108866	8114917	LINE|L1|L1PA3	-	chr20	8114452	8788521	PLCB1|ENST00000625874.2	+	8114452,8150293,8371381,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8114573,8150371,8371450,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788521	0.598985
SK_MEL_5_cytosolic_fraction	chr9	20658568	20658643	20658568	+	High_confidence	15	15	116	3.682700	5.116608	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658311	20674036	MSTRG.28930.3	+	20658311,20673619	20658826,20674036	0.844828
SK_MEL_5_cytosolic_fraction	chr18	659659	659714	659713	+	RAMPAGE_only	14	14	88	2.793773	4.260648	chr18	659744	659794	LINE|L2|L2a	+	chr18	657742	673484	TYMS|ENST00000323224.7	+	657742,659640,662145,670691,671379,672859	657947,659714,662320,670867,671451,673484	0.977273
SK_MEL_5_cytosolic_fraction	chr3	32089325	32089326	32089325	-	High_confidence	417	425	459	14.572064	5.045363	chr3	32089211	32089604	LTR|ERVK|LTR3B	-	chr3	31876434	32089315	MSTRG.20144.18	-	31876434,31879654,32046490,32088987	31876512,31879830,32046603,32089315	0.843137
SK_MEL_5_cytosolic_fraction	chr1	91345791	91345824	91345817	-	RAMPAGE_only	5	8	24	0.761938	2.913977	chr1	91345659	91346137	LTR|ERV1|MER39	+	chr1	91262185	91347449	HFM1|ENST00000430465.1	-	91262185,91262480,91266016,91267744,91273711,91274729,91276627,91276981,91313348,91313956,91315814,91316100,91316390,91319292,91322949,91323092,91324674,91343429,91347428	91262392,91262592,91266107,91267855,91273815,91274809,91276743,91277062,91313495,91314060,91315972,91316184,91316476,91319390,91322997,91323199,91324766,91343510,91347449	0.833333
SK_MEL_5_cytosolic_fraction	chr10	112589287	112589367	112589366	+	High_confidence	44	45	168	5.333566	6.454180	chr10	112589165	112589539	LTR|ERVL-MaLR|THE1B	+	chr10	112589260	112818744	MSTRG.3925.11	+	112589260,112668217,112668936,112815289	112589456,112668288,112668998,112818744	0.601190
SK_MEL_5_cytosolic_fraction	chr10	97634158	97634166	97634158	-	High_confidence	3	6	12	0.380969	2.845351	chr10	97634006	97634308	SINE|Alu|AluJo	+	chr10	97614552	97634156	MORN4|NM_001098831.1	-	97614552,97616677,97617207,97619586,97634004	97616411,97616787,97617322,97619683,97634156	0.583333
SK_MEL_5_cytosolic_fraction	chr2	216107591	216107599	216107598	+	High_confidence	6	6	12	0.380969	3.584963	chr2	216107336	216107624	SINE|Alu|AluJo	+	chr2	216107463	216206303	XRCC5|ENST00000392133.7	+	216107463,216107652,216109090,216113015,216116658,216117745,216119042,216122061,216125916,216127535,216130874,216132324,216137087,216138088,216141185,216148082,216160067,216161978,216190224,216192638,216194918,216204321,216205187	216107532,216107698,216109457,216113129,216116842,216117794,216119165,216122253,216126031,216127674,216130987,216132387,216137225,216138179,216141319,216148276,216160161,216162048,216190334,216192735,216194986,216204396,216206303	1.000000
SK_MEL_5_cytosolic_fraction	chr3	101949161	101949162	101949161	+	RAMPAGE_only	36	37	44	1.396886	5.083128	chr3	101948967	101949326	LTR|ERVL-MaLR|THE1B	+	chr3	101960385	101996532	AC106712.1|ENST00000498624.1	+	101960385,101994560,101996480	101960731,101994668,101996532	0.659091
SK_MEL_5_cytosolic_fraction	chr11	5505684	5505714	5505713	-	High_confidence	4	4	18	0.571453	3.794653	chr11	5505485	5505844	LTR|ERVL-MaLR|THE1B	-	chr11	5268344	5505652	HBE1|ENST00000292896.3	-	5268344,5269453,5269798,5505568	5268597,5269676,5270156,5505652	0.611111
SK_MEL_5_cytosolic_fraction	chr12	50763491	50763534	50763508	+	High_confidence	5	5	21	0.666696	3.784184	chr12	50763350	50763657	SINE|Alu|AluJo	+	chr12	50763709	50814192	ATF1|ENST00000552510.5	+	50763709,50780139,50795908,50809455,50814009	50763741,50780238,50796009,50809589,50814192	0.809524
SK_MEL_5_cytosolic_fraction	chr3	172289779	172289814	172289813	+	RAMPAGE_only	4	4	9	0.285727	3.000000	chr3	172289773	172289960	SINE|MIR|MIRb	+	chr3	172046912	172397481	FNDC3B|ENST00000416957.5	+	172046912,172112451,172133470,172226870,172247532,172251259,172285925,172295362,172298727,172307362,172310827,172328951,172330540,172333088,172334943,172337329,172341112,172343010,172344085,172346326,172347211,172352802,172362632,172378269,172380965,172397163	172046947,172112590,172133546,172226947,172247776,172251541,172285984,172295514,172298787,172307501,172310881,172329076,172330715,172333175,172335082,172337401,172341231,172343116,172344258,172346440,172347361,172353083,172362845,172378436,172381093,172397481	0.888889
SK_MEL_5_cytosolic_fraction	chr9	72931479	72931506	72931484	-	High_confidence	6	6	15	0.476211	3.182006	chr9	72931287	72931516	SINE|MIR|MIR	-	chr9	72900669	72931556	MSTRG.29209.2	-	72900669,72905957,72909601,72911957,72916919,72918719,72924018,72925483,72927115,72928891,72930878,72931226	72901280,72906032,72909759,72912122,72917104,72918822,72924132,72925612,72927177,72929021,72931019,72931556	0.800000
SK_MEL_5_cytosolic_fraction	chr2	55615837	55615857	55615856	-	High_confidence	9	9	27	0.857180	4.384517	chr2	55615580	55615882	SINE|Alu|AluSc	+	chr2	55598697	55616617	PPP4R3B|ENST00000470801.1	-	55598697,55603977,55615450,55616517	55599039,55604076,55615506,55616617	0.703704
SK_MEL_5_cytosolic_fraction	chr13	46467779	46467872	46467835	-	High_confidence	40	47	243	7.714622	6.019613	chr13	46467669	46468268	LTR|ERV1|HERVE-int	+	chr13	46455137	46467836	LINC01198|ENST00000650465.1	-	46455137,46457839,46460944,46464674,46465842,46466608,46467738	46455511,46457913,46461085,46464819,46465987,46466709,46467836	0.950617
SK_MEL_5_cytosolic_fraction	chr4	102431241	102431271	102431241	-	High_confidence	4	4	21	0.666696	3.821928	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.857143
SK_MEL_5_cytosolic_fraction	chr1	67207615	67207616	67207615	+	High_confidence	15	16	17	0.539706	3.750000	chr1	67207421	67207774	LTR|ERVL-MaLR|THE1A	+	chr1	67207615	67259248	IL23R|ENST00000425614.3	+	67207615,67219573,67236712,67240178,67255836,67258477	67207698,67219730,67236802,67240281,67255927,67259248	0.941176
SK_MEL_5_cytosolic_fraction	chr6	10434533	10434627	10434559	-	High_confidence	7	7	51	1.619118	3.749729	chr6	10434400	10434600	SINE|MIR|MIRb	+	chr6	10429708	10434495	LINC00518|ENST00000472178.1	-	10429708,10434247	10430313,10434495	0.921569
SK_MEL_5_cytosolic_fraction	chr8	18083345	18083362	18083361	-	High_confidence	4	5	11	0.349222	3.459432	chr8	18083239	18083389	SINE|MIR|MIR3	+	chr8	18056458	18083408	ASAH1|ENST00000636691.1	-	18056458,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18067219,18069791,18071299,18075540,18083121	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18064531,18067298,18069878,18071390,18075587,18083408	0.636364
SK_MEL_5_cytosolic_fraction	chr8	62164908	62164910	62164908	-	High_confidence	3	6	9	0.285727	3.000000	chr8	62164702	62165238	LINE|L1|L1PB1	+	chr8	62133347	62164805	MSTRG.28061.1	-	62133347,62164568	62135746,62164805	0.555556
SK_MEL_5_cytosolic_fraction	chr14	77710836	77710867	77710866	+	High_confidence	4	6	14	0.444464	2.507380	chr14	77710914	77711213	LINE|L1|L1MA1	+	chr14	77710643	77717584	SLIRP|ENST00000556956.1	+	77710643,77715771,77717495	77710896,77715879,77717584	0.928571
SK_MEL_5_cytosolic_fraction	chr8	80485592	80485655	80485592	+	High_confidence	13	13	40	1.269897	5.021928	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.850000
SK_MEL_5_cytosolic_fraction	chr9	5895819	5895823	5895822	-	High_confidence	229	238	471	14.953033	5.006127	chr9	5895605	5895783	DNA|hAT-Charlie|MER5A	-	chr9	5891260	5895827	MSTRG.28862.1	-	5891260,5895564	5893040,5895827	0.906582
SK_MEL_5_cytosolic_fraction	chr16	4355592	4355593	4355592	-	High_confidence	655	661	661	20.985042	5.045040	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.978820
SK_MEL_5_cytosolic_fraction	chr10	72220368	72220369	72220368	+	RAMPAGE_only	4	5	7	0.222232	2.521641	chr10	72220369	72220666	SINE|Alu|AluJo	+	chr10	72223132	72233829	ANAPC16|ENST00000470481.2	+	72223132,72230365,72233000	72224056,72230440,72233829	1.000000
SK_MEL_5_cytosolic_fraction	chr3	177628295	177628296	177628295	-	High_confidence	230	233	249	7.905107	5.731669	chr3	177628122	177628491	LTR|ERVL-MaLR|THE1B	-	chr3	177621381	177628287	AC026355.2|ENST00000456755.1	-	177621381,177622626,177628205	177621945,177622703,177628287	0.714859
SK_MEL_5_cytosolic_fraction	chr4	107155489	107155523	107155522	-	RAMPAGE_only	22	22	58	1.841350	5.503857	chr4	107155517	107155577	LINE|L2|L2a	+	chr4	106921801	107036297	DKK2|ENST00000285311.7	-	106921801,106924544,106925798,107035369	106924204,106924700,106925949,107036297	0.741379
SK_MEL_5_cytosolic_fraction	chr21	18485883	18485884	18485883	-	High_confidence	6	7	7	0.222232	2.584963	chr21	18485714	18486071	LTR|ERVL-MaLR|THE1B	-	chr21	18365139	18485879	TMPRSS15|ENST00000422787.1	-	18365139,18372192,18379282,18380539,18383626,18397878,18398198,18485798	18365248,18372324,18379318,18380584,18383778,18397946,18398329,18485879	0.571429
SK_MEL_5_cytosolic_fraction	chr3	112302375	112302390	112302375	+	High_confidence	3	3	12	0.380969	3.418296	chr3	112301857	112302478	LTR|ERV1|LTR76	+	chr3	112302422	112330324	MSTRG.20844.1	+	112302422,112306913,112326521,112327610,112329345,112330249	112302714,112307198,112326650,112327706,112329386,112330324	0.916667
SK_MEL_5_cytosolic_fraction	chr1	240339116	240339120	240339116	+	RAMPAGE_only	17	17	27	0.857180	4.373661	chr1	240338677	240339204	DNA|hAT-Charlie|MER1A	-	chr1	240329143	240475183	FMN2|ENST00000545751.2	+	240329143,240329338,240330602,240333886,240334108,240334120,240355815,240392510,240438060,240472371,240474127	240329167,240329468,240330749,240333946,240334118,240334229,240355908,240392562,240438210,240472453,240475183	0.888889
SK_MEL_5_cytosolic_fraction	chr1	45191078	45191101	45191100	-	RAMPAGE_only	2	2	7	0.222232	2.584963	chr1	45190927	45191232	SINE|Alu|AluYk3	-	chr1	45016398	45206556	ZSWIM5|ENST00000359600.5	-	45016398,45020065,45020624,45034311,45035687,45036038,45038935,45040391,45043218,45051073,45058608,45060098,45087880,45205755	45019316,45020147,45020788,45034469,45035823,45036299,45039073,45040538,45043395,45051253,45058759,45060247,45088237,45206556	0.571429
SK_MEL_5_cytosolic_fraction	chr8	58630006	58630009	58630008	-	RAMPAGE_only	5	6	9	0.285727	3.000000	chr8	58629919	58630307	LINE|L1|L1M4	-	chr8	58583503	58659407	NSMAF|NM_001144772.1	-	58583503,58585651,58585897,58586457,58587617,58589451,58590006,58590866,58594231,58595559,58597386,58597859,58599231,58599749,58599969,58601284,58601444,58602057,58603209,58605926,58607768,58609603,58623219,58623376,58623708,58631495,58635188,58635304,58635467,58642983,58659194	58584200,58585761,58586000,58586608,58587701,58589575,58590074,58590934,58594290,58595659,58597550,58597902,58599363,58599870,58600021,58601348,58601535,58602137,58603386,58606035,58607840,58609733,58623272,58623424,58623780,58631546,58635225,58635372,58635546,58643073,58659407	0.555556
SK_MEL_5_cytosolic_fraction	chr1	64220530	64220543	64220530	+	RAMPAGE_only	4	4	11	0.349222	2.846439	chr1	64219978	64220818	LINE|L1|HAL1	-	chr1	64214814	64267368	UBE2U|ENST00000608020.5	+	64214814,64220858,64232560,64241651,64260602,64267023	64214932,64220907,64232649,64241733,64260694,64267368	0.545455
SK_MEL_5_cytosolic_fraction	chr14	102234541	102234563	102234541	-	High_confidence	7	8	22	0.698443	4.004886	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102231745	102234153	MOK|ENST00000520046.1	-	102231745,102232534,102233687	102231821,102232671,102234153	0.590909
SK_MEL_5_cytosolic_fraction	chrX	72305911	72305914	72305913	-	High_confidence	39	51	58	1.841350	4.641379	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	0.982759
SK_MEL_5_cytosolic_fraction	chr16	21611703	21611704	21611703	+	High_confidence	15	16	21	0.666696	4.201841	chr16	21611579	21611827	SINE|MIR|MIRb	-	chr16	21612099	21625115	METTL9|ENST00000562961.1	+	21612099,21612644,21617864,21624930	21612298,21612835,21618074,21625115	0.809524
SK_MEL_5_cytosolic_fraction	chr16	8870918	8870934	8870918	-	RAMPAGE_only	2	2	10	0.317474	2.947703	chr16	8870671	8870950	SINE|Alu|AluJb	+	chr16	8852941	8869012	CARHSP1|NM_014316.3	-	8852941,8858349,8859170,8868965	8855326,8858472,8859335,8869012	0.900000
SK_MEL_5_cytosolic_fraction	chr5	71586702	71586745	71586718	+	High_confidence	3	3	13	0.412716	3.418296	chr5	71586450	71587046	LTR|ERV1|MER51A	-	chr5	71587287	71657215	MCCC2|ENST00000512218.6	+	71587287,71592925,71596279,71599658,71602505,71604355,71632120,71634942,71635150,71641002,71643770,71646210,71649096,71650068,71652668,71656742	71587554,71592992,71596364,71599760,71602633,71604468,71632185,71635042,71635246,71641083,71643895,71646277,71649253,71650183,71652754,71657215	0.846154
SK_MEL_5_cytosolic_fraction	chr3	33864068	33864119	33864081	+	RAMPAGE_only	5	7	26	0.825433	2.801706	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.961538
SK_MEL_5_cytosolic_fraction	chr18	9849540	9849565	9849540	+	RAMPAGE_only	2	2	10	0.317474	2.921928	chr18	9849471	9850083	LINE|L2|L2a	-	chr18	9856043	9859520	RAB31|ENST00000577284.1	+	9856043,9859227	9856354,9859520	0.700000
SK_MEL_5_cytosolic_fraction	chr14	58456122	58456149	58456146	+	RAMPAGE_only	3	3	14	0.444464	3.700440	chr14	58455704	58456407	LINE|L1|L1M4	-	chr14	58442705	58537219	KIAA0586|ENST00000538571.6	+	58442705,58443953,58448339,58450578,58453349,58456701,58457758,58458472,58459842,58460985,58465834,58467734,58470612,58472198,58474606,58477122,58482512,58487006,58487886,58488620,58490163,58492143,58498782,58508554,58512521,58537006	58442880,58444175,58448493,58450746,58453473,58456810,58457979,58458545,58460070,58461160,58466029,58467922,58470723,58472279,58474797,58477241,58482712,58487166,58488109,58488874,58490240,58492275,58498960,58508709,58512627,58537219	0.928571
SK_MEL_5_cytosolic_fraction	chr1	221714456	221714481	221714480	-	RAMPAGE_only	6	6	21	0.666696	4.121928	chr1	221714228	221714848	LTR|ERV1|LTR9	+	chr1	221702426	221711816	DUSP10|ENST00000494642.1	-	221702426,221706094,221711636	221702677,221706466,221711816	0.571429
SK_MEL_5_cytosolic_fraction	chr6	125219777	125219781	125219777	+	High_confidence	863	885	1527	48.478305	6.819640	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219737	125263496	MSTRG.25589.13	+	125219737,125220077,125229117,125248281,125253716,125257097,125262833	125219806,125220193,125229266,125248383,125253755,125257180,125263496	0.969221
SK_MEL_5_cytosolic_fraction	chr11	14681465	14681466	14681465	+	RAMPAGE_only	8	8	8	0.253979	3.000000	chr11	14681274	14681591	LTR|ERVL-MaLR|THE1B	+	chr11	14643830	14869894	PDE3B|ENST00000455098.2	+	14643830,14771936,14786436,14789105,14803943,14818182,14819135,14830697,14831639,14832721,14834981,14843826,14859042,14861204,14867505,14869460	14645053,14771987,14786532,14789242,14804050,14818393,14819209,14830846,14831777,14832833,14835095,14844026,14859246,14861366,14867758,14869894	0.625000
SK_MEL_5_cytosolic_fraction	chr6	63563455	63563459	63563458	+	RAMPAGE_only	15	16	27	0.857180	4.257756	chr6	63563031	63563704	LINE|L2|L2a	+	chr6	63572011	63583587	AL135905.2|ENST00000370651.6	+	63572011,63576435,63578436,63578897,63579256,63580056	63572719,63576985,63578529,63579028,63579331,63583587	0.888889
SK_MEL_5_cytosolic_fraction	chr3	6490724	6490798	6490724	+	High_confidence	4	5	26	0.825433	3.979098	chr3	6484911	6490929	LINE|L1|L1PA2	-	chr3	6490802	6557959	AC069277.1|ENST00000414603.1	+	6490802,6557586	6490946,6557959	0.884615
SK_MEL_5_cytosolic_fraction	chr17	4143199	4143244	4143199	+	High_confidence	319	332	857	27.207536	5.870054	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.983664
SK_MEL_5_cytosolic_fraction	chr3	37163435	37163458	37163435	-	RAMPAGE_only	4	4	14	0.444464	3.664498	chr3	37163292	37163695	LTR|ERVL-MaLR|MLT1J2	+	chr3	37052889	37174564	LRRFIP2|ENST00000336686.8	-	37052889,37054410,37055085,37058789,37063741,37065809,37066223,37072789,37075023,37083635,37091466,37094791,37096615,37102923,37105454,37108072,37108636,37109526,37109652,37110990,37112914,37115053,37121491,37121634,37127629,37129062,37148893,37174538	37053961,37054515,37055165,37058910,37063791,37065942,37066325,37072882,37075116,37083806,37091538,37094908,37096660,37103013,37105523,37108129,37108684,37109571,37109703,37111065,37112980,37115095,37121536,37121691,37127680,37129149,37149038,37174564	0.500000
SK_MEL_5_cytosolic_fraction	chr12	119179290	119179297	119179296	+	High_confidence	11	12	25	0.793685	3.313411	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	1.000000
SK_MEL_5_cytosolic_fraction	chr20	18794063	18794078	18794077	+	High_confidence	11	11	43	1.365139	4.782564	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.976744
SK_MEL_5_cytosolic_fraction	chr18	5459148	5459161	5459148	+	RAMPAGE_only	4	4	8	0.253979	3.000000	chr18	5459153	5459275	SINE|Alu|FLAM_A	+	chr18	5463626	5480975	AP005059.2|ENST00000577527.1	+	5463626,5467411,5479625,5480895	5463834,5467580,5479746,5480975	0.875000
SK_MEL_5_cytosolic_fraction	chr1	28506429	28506435	28506430	+	High_confidence	3	4	10	0.317474	3.169925	chr1	28506187	28506484	SINE|Alu|AluSx	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.900000
SK_MEL_5_cytosolic_fraction	chr2	145023656	145023740	145023679	+	High_confidence	9	9	47	1.492129	5.198102	chr2	145023667	145023901	SINE|MIR|MIR	+	chr2	145023252	145073025	TEX41|ENST00000628167.2	+	145023252,145044365,145070819,145072523	145023273,145044463,145070941,145073025	0.553191
SK_MEL_5_cytosolic_fraction	chr11	38337190	38337217	38337203	-	High_confidence	39	39	249	7.905107	6.423961	chr11	38337000	38337314	SINE|Alu|AluY	+	chr11	38303845	38337205	MSTRG.4581.1	-	38303845,38325174,38336836	38304257,38325269,38337205	0.670683
SK_MEL_5_cytosolic_fraction	chr1	89113014	89113048	89113047	-	High_confidence	66	76	292	9.270246	5.441770	chr1	89112996	89113213	SINE|MIR|MIRb	+	chr1	89108116	89113050	GBP2|ENST00000493802.5	-	89108116,89109676,89110163,89112471,89112941	89108291,89109870,89110266,89112684,89113050	0.948630
SK_MEL_5_cytosolic_fraction	chr9	69307106	69307135	69307113	-	High_confidence	20	20	84	2.666783	5.055643	chr9	69306938	69307567	LTR|ERV1|MER41B	-	chr9	69296684	69307135	BANCR|ENST00000624238.2	-	69296684,69304935,69306147,69306853	69296867,69305077,69306290,69307135	0.880952
SK_MEL_5_cytosolic_fraction	chr14	87872354	87872363	87872354	-	RAMPAGE_only	33	38	63	2.000087	5.292845	chr14	87872191	87872553	LTR|ERVL-MaLR|THE1B	-	chr14	87736401	87816251	AL359237.1|ENST00000554519.1	-	87736401,87763705,87816131	87736989,87763810,87816251	0.571429
SK_MEL_5_cytosolic_fraction	chr8	75324425	75324463	75324431	-	High_confidence	3	3	17	0.539706	3.625000	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.529412
SK_MEL_5_cytosolic_fraction	chr17	68248550	68248588	68248568	+	High_confidence	4	4	15	0.476211	3.521641	chr17	68248543	68248580	LINE|L2|L2c	-	chr17	68248534	68256926	AMZ2|ENST00000585050.5	+	68248534,68249010,68250359,68250793,68251049,68256813	68248705,68249096,68250470,68250967,68251178,68256926	0.666667
SK_MEL_5_cytosolic_fraction	chr18	13730744	13730748	13730744	+	High_confidence	3	3	7	0.222232	2.807355	chr18	13730416	13730820	DNA|hAT-Charlie|MER119	-	chr18	13730437	13760067	RNMT|ENST00000589866.5	+	13730437,13731475,13734463,13737009,13740166,13741509,13742487,13746219,13752325,13754113,13759941	13730755,13731934,13734599,13737135,13740279,13741691,13742652,13746337,13752427,13754147,13760067	0.714286
SK_MEL_5_cytosolic_fraction	chr8	99893444	99893570	99893444	-	High_confidence	19	20	178	5.651040	5.053040	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.994382
SK_MEL_5_cytosolic_fraction	chr5	160199150	160199156	160199155	+	High_confidence	61	67	133	4.222406	4.615436	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.992481
SK_MEL_5_cytosolic_fraction	chr11	22317830	22317869	22317868	-	High_confidence	4	7	20	0.634948	3.642150	chr11	22317577	22318319	LTR|ERV1|LTR17	-	chr11	22261208	22318078	MSTRG.4471.1	-	22261208,22262168,22281541,22283729,22301279,22305656,22307236,22317546	22261636,22262254,22281643,22283824,22301399,22305807,22307374,22318078	0.950000
SK_MEL_5_cytosolic_fraction	chr6	100633224	100633239	100633224	-	RAMPAGE_only	7	7	20	0.634948	4.037401	chr6	100633071	100633583	DNA|TcMar-Tigger|MER44C	+	chr6	100508193	100881364	ASCC3|ENST00000369162.6	-	100508193,100509931,100512708,100516179,100517990,100540162,100589633,100589947,100601809,100605567,100606739,100606950,100625191,100627589,100627841,100629014,100631127,100638600,100642580,100644030,100646614,100647225,100650537,100651559,100652724,100655698,100661805,100662344,100679617,100715461,100718074,100725538,100766564,100767144,100798712,100799430,100800299,100805759,100848147,100864063,100867907,100881060	100509533,100510107,100512918,100516327,100518142,100540387,100589768,100590059,100601935,100605700,100606860,100607088,100625334,100627710,100627987,100629181,100631213,100638821,100642749,100644129,100646769,100647451,100650714,100651646,100652889,100655818,100662030,100662536,100679752,100715533,100718251,100725703,100766705,100767345,100798838,100799572,100800504,100805880,100848707,100864214,100868038,100881364	0.850000
SK_MEL_5_cytosolic_fraction	chr19	39485700	39485803	39485802	+	High_confidence	36	37	129	4.095417	5.432372	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	1.000000
SK_MEL_5_cytosolic_fraction	chr5	31538144	31538167	31538163	+	High_confidence	136	136	250	7.936854	5.373715	chr5	31537737	31538167	LTR|ERVL-MaLR|MLT1J	-	chr5	31538172	31545714	C5orf22|ENST00000510530.1	+	31538172,31540948,31541280,31545645	31538689,31541011,31541402,31545714	0.956000
SK_MEL_5_cytosolic_fraction	chr21	8850035	8850073	8850072	+	RAMPAGE_only	4	4	22	0.698443	4.061482	chr21	8850073	8850241	SINE|MIR|MIRb	+	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	0.909091
SK_MEL_5_cytosolic_fraction	chr2	206771739	206771773	206771767	+	RAMPAGE_only	3	5	18	0.571453	3.807764	chr2	206771533	206771837	SINE|Alu|AluJo	+	chr2	206765646	206791946	FASTKD2|ENST00000487777.5	+	206765646,206766643,206770090,206771181,206771893,206772180,206774224,206786732,206787936,206788818	206765654,206767470,206770194,206771290,206772017,206772320,206774397,206786899,206788155,206791946	0.944444
SK_MEL_5_cytosolic_fraction	chr7	99358654	99358720	99358654	+	High_confidence	41	60	239	7.587633	5.404064	chr7	99358536	99358830	SINE|Alu|AluSp	-	chr7	99358665	99366214	ARPC1A|ENST00000463009.1	+	99358665,99359544,99363542,99365890	99358775,99359738,99363633,99366214	0.995816
SK_MEL_5_cytosolic_fraction	chr7	104804080	104804110	104804098	-	High_confidence	5057	5648	14315	454.464268	7.865153	chr7	104804006	104804386	LTR|ERVL-MaLR|MLT1K	-	chr7	104798997	104804092	LHFPL3-AS1|NR_034142.1	-	104798997,104802838,104803955	104800069,104802963,104804092	0.832064
SK_MEL_5_cytosolic_fraction	chr2	73736756	73736757	73736756	-	High_confidence	12	12	12	0.380969	3.188722	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73729889	73737335	MSTRG.16628.6	-	73729889,73730559,73732162,73732583,73734428,73737301	73730029,73730736,73732285,73732704,73734591,73737335	1.000000
SK_MEL_5_cytosolic_fraction	chr16	21612251	21612315	21612296	+	High_confidence	8	9	54	1.714360	5.317672	chr16	21612297	21612508	SINE|MIR|MIRc	+	chr16	21612099	21625115	METTL9|ENST00000562961.1	+	21612099,21612644,21617864,21624930	21612298,21612835,21618074,21625115	0.796296
SK_MEL_5_cytosolic_fraction	chr2	37342758	37342827	37342792	+	High_confidence	25	30	178	5.651040	5.559624	chr2	37342693	37343084	LTR|ERVL|LTR16A	+	chr2	37342826	37373322	MSTRG.16270.1	+	37342826,37352788,37359579,37367231,37369684,37372355,37372681	37342923,37352935,37359858,37367408,37369784,37372472,37373322	0.955056
SK_MEL_5_cytosolic_fraction	chr7	104803698	104803725	104803698	-	High_confidence	2	3	8	0.253979	2.807355	chr7	104803577	104803734	DNA|hAT-Tip100|MER91A	-	chr7	104738597	104803539	MSTRG.26989.4	-	104738597,104744049,104752714,104759702,104761473,104785219,104785730,104798336,104799817,104802838,104803451	104738955,104744180,104752791,104759822,104761580,104785378,104785785,104798407,104800069,104802963,104803539	0.750000
SK_MEL_5_cytosolic_fraction	chr2	40321703	40321746	40321711	-	RAMPAGE_only	11	11	46	1.460381	4.941934	chr2	40321470	40321842	LTR|ERVL-MaLR|THE1C	-	chr2	40114730	40430271	SLC8A1|ENST00000407929.6	-	40114730,40139400,40160764,40164853,40174824,40177751,40178386,40428472	40115629,40139676,40160864,40164984,40174842,40177855,40178493,40430271	0.913043
SK_MEL_5_cytosolic_fraction	chr7	107580452	107580483	107580458	+	High_confidence	3	3	9	0.285727	2.947703	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.888889
SK_MEL_5_cytosolic_fraction	chr12	73153644	73153645	73153644	-	RAMPAGE_only	7	9	9	0.285727	2.947703	chr12	73147617	73153645	LINE|L1|L1PA2	-	chr12	73116494	73143858	AC090503.2|ENST00000552840.1	-	73116494,73129091,73143752	73116636,73129161,73143858	0.666667
SK_MEL_5_cytosolic_fraction	chr3	112302447	112302484	112302483	+	High_confidence	59	60	135	4.285901	6.080291	chr3	112302478	112303209	LTR|ERV1|HERV3-int	+	chr3	112302422	112330324	MSTRG.20844.1	+	112302422,112306913,112326521,112327610,112329345,112330249	112302714,112307198,112326650,112327706,112329386,112330324	0.762963
SK_MEL_5_cytosolic_fraction	chr22	50756927	50756950	50756949	+	High_confidence	4	4	14	0.444464	3.392747	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.714286
SK_MEL_5_cytosolic_fraction	chr13	60410080	60410081	60410080	+	High_confidence	306	327	341	10.825869	6.432181	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60409985	60573872	MSTRG.7800.9	+	60409985,60439687,60444682,60460379,60467237,60468350,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573612	60410164,60439772,60444748,60460540,60467379,60468403,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573872	0.950147
SK_MEL_5_cytosolic_fraction	chr20	35307069	35307091	35307090	-	High_confidence	10	10	24	0.761938	4.349649	chr20	35306926	35307046	SINE|MIR|MIR3	-	chr20	35302565	35307082	UQCC1|ENST00000472559.5	-	35302565,35306665	35304069,35307082	0.958333
SK_MEL_5_cytosolic_fraction	chr3	135965670	135965742	135965718	+	High_confidence	17	20	153	4.857355	5.896369	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.973856
SK_MEL_5_cytosolic_fraction	chr17	10291822	10291831	10291822	+	High_confidence	10	11	32	1.015917	5.000000	chr17	10291623	10291998	LTR|ERVL-MaLR|THE1B	+	chr17	10291819	10341458	MSTRG.12161.1	+	10291819,10317497,10318454,10320391,10324842,10341063	10291913,10317867,10318549,10320512,10324967,10341458	0.718750
SK_MEL_5_cytosolic_fraction	chr12	127983862	127983863	127983862	-	High_confidence	4	6	6	0.190484	2.584963	chr12	127983198	127984510	LTR|ERV1|LTR12C	+	chr12	127883988	127983891	LINC00508|NR_126452.2	-	127883988,127940573,127983066,127983801	127885105,127940735,127983125,127983891	1.000000
SK_MEL_5_cytosolic_fraction	chr14	81170402	81170431	81170413	-	High_confidence	14	20	94	2.984257	5.644281	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.851064
SK_MEL_5_cytosolic_fraction	chr5	33297999	33298025	33297999	-	High_confidence	5	5	23	0.730191	4.001823	chr5	33297738	33298188	LTR|ERV1|MER48	-	chr5	33023054	33297910	AC010343.3|ENST00000510327.1	-	33023054,33263499,33297731	33023327,33263666,33297910	0.913043
SK_MEL_5_cytosolic_fraction	chr22	38215338	38215454	38215453	+	RAMPAGE_only	12	12	57	1.809603	5.012911	chr22	38215377	38215479	SINE|MIR|MIR3	-	chr22	38213534	38216505	MAFF|ENST00000407965.1	+	38213534,38213822,38214419	38213706,38213889,38216505	0.964912
SK_MEL_5_cytosolic_fraction	chr8	100919848	100920021	100920020	-	RAMPAGE_only	9	9	82	2.603288	5.114063	chr8	100919701	100920019	LTR|ERV1|MER34B-int	-	chr8	100918575	100950571	YWHAZ|NM_001135702.1	-	100918575,100923954,100924134,100924915,100948595,100950405	100920752,100924050,100924298,100925039,100948900,100950571	0.975610
SK_MEL_5_cytosolic_fraction	chr5	147257649	147257661	147257649	+	RAMPAGE_only	21	23	45	1.428634	4.997083	chr5	147256811	147259543	LTR|ERV1|HERVIP10FH-int	-	chr5	147235124	147384678	STK32A|ENST00000398523.3	+	147235124,147239538,147278123,147279246,147323897,147343005,147351064,147361516,147370653,147373168,147375089,147383440,147383889,147384374	147235199,147239686,147278179,147279398,147324071,147343043,147351154,147361614,147370770,147373294,147375218,147383505,147383954,147384678	0.555556
SK_MEL_5_cytosolic_fraction	chr8	123796185	123796210	123796185	+	RAMPAGE_only	4	6	14	0.444464	3.546594	chr8	123795673	123796461	DNA|TcMar-Tigger|Tigger2	+	chr8	123768645	123814773	FAM91A1|ENST00000519721.5	+	123768645,123774079,123775146,123777264,123778024,123778658,123779984,123780479,123784469,123785080,123785628,123786494,123787260,123787663,123789612,123798089,123799519,123799771,123805266,123806079,123808271,123808892,123810281,123812518	123768774,123774164,123775298,123777322,123778092,123778772,123780082,123780542,123784576,123785119,123785741,123786610,123787373,123787750,123789745,123798238,123799654,123799885,123805339,123806229,123808376,123809016,123810351,123814773	0.642857
SK_MEL_5_cytosolic_fraction	chr3	134485438	134485496	134485443	-	High_confidence	10	15	98	3.111247	5.743444	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	1.000000
SK_MEL_5_cytosolic_fraction	chr12	31121337	31121347	31121337	-	RAMPAGE_only	64	64	93	2.952510	4.089362	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119151	MSTRG.6148.4	-	31111658,31112213,31112980,31114395,31114836,31116356,31117040,31118896	31111809,31112288,31113083,31114464,31114927,31116469,31117164,31119151	0.741935
SK_MEL_5_cytosolic_fraction	chr11	22317609	22317637	22317636	-	High_confidence	8	8	29	0.920675	4.458591	chr11	22317577	22318319	LTR|ERV1|LTR17	-	chr11	22261208	22318078	MSTRG.4471.1	-	22261208,22262168,22281541,22283729,22301279,22305656,22307236,22317546	22261636,22262254,22281643,22283824,22301399,22305807,22307374,22318078	0.862069
SK_MEL_5_cytosolic_fraction	chr1	151166618	151166680	151166642	+	High_confidence	11	15	70	2.222319	5.198408	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	0.957143
SK_MEL_5_cytosolic_fraction	chr11	110349884	110349888	110349884	+	RAMPAGE_only	5	8	13	0.412716	2.855389	chr11	110349666	110349916	LTR|ERVL|ERVL-E-int	-	chr11	110355129	110439406	MSTRG.5467.1	+	110355129,110366360,110406243,110439367	110355518,110366534,110407235,110439406	0.692308
SK_MEL_5_cytosolic_fraction	chr7	134213336	134213362	134213336	+	High_confidence	2	3	8	0.253979	3.000000	chr7	134213229	134213405	LINE|L2|L2b	-	chr7	134212878	134264186	MSTRG.27259.6	+	134212878,134221778,134247555,134248950,134258256,134263844	134213002,134221918,134247644,134249076,134258405,134264186	0.875000
SK_MEL_5_cytosolic_fraction	chr7	40547018	40547033	40547018	-	High_confidence	7	7	16	0.507959	4.000000	chr7	40546944	40547406	LTR|ERVL|MLT2B4	-	chr7	40538126	40546928	AC004988.1|ENST00000415237.1	-	40538126,40546713	40539682,40546928	0.625000
SK_MEL_5_cytosolic_fraction	chr1	239629308	239629331	239629330	+	High_confidence	2	4	8	0.253979	3.000000	chr1	239623498	239629523	LINE|L1|L1HS	-	chr1	239629072	239915452	CHRM3|ENST00000255380.8	+	239629072,239632223,239678185,239827251,239907432	239629539,239632286,239678288,239827378,239915452	0.750000
SK_MEL_5_cytosolic_fraction	chr13	99496755	99496812	99496811	-	High_confidence	8	9	31	0.984170	4.760648	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.806452
SK_MEL_5_cytosolic_fraction	chr11	2899529	2899530	2899529	-	RAMPAGE_only	6	6	8	0.253979	2.807355	chr11	2899225	2899531	LINE|L2|L2b	+	chr11	2888096	2903490	SLC22A18AS|ENST00000455942.3	-	2888096,2902583,2903458	2888635,2902709,2903490	0.875000
SK_MEL_5_cytosolic_fraction	chr3	58526760	58526800	58526765	-	High_confidence	41	41	89	2.825520	5.371456	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	1.000000
SK_MEL_5_cytosolic_fraction	chr2	55268624	55268650	55268624	-	High_confidence	4	4	15	0.476211	3.506891	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	1.000000
SK_MEL_5_cytosolic_fraction	chr2	40321651	40321652	40321651	-	RAMPAGE_only	51	54	55	1.746108	5.133396	chr2	40321470	40321842	LTR|ERVL-MaLR|THE1C	-	chr2	40114730	40430271	SLC8A1|ENST00000407929.6	-	40114730,40139400,40160764,40164853,40174824,40177751,40178386,40428472	40115629,40139676,40160864,40164984,40174842,40177855,40178493,40430271	0.872727
SK_MEL_5_cytosolic_fraction	chr14	23636366	23636367	23636366	+	High_confidence	14	14	17	0.539706	3.499228	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	1.000000
SK_MEL_5_cytosolic_fraction	chr12	93773408	93773412	93773408	+	RAMPAGE_only	25	33	61	1.936592	4.471215	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.786885
SK_MEL_5_cytosolic_fraction	chr7	106598810	106598819	106598810	-	High_confidence	7	7	18	0.571453	3.905765	chr7	106598614	106598802	LTR|ERVL-MaLR|MLT1J	-	chr7	106569875	106598808	AC005050.1|ENST00000650160.1	-	106569875,106572947,106591549,106598753	106571144,106573160,106591682,106598808	0.555556
SK_MEL_5_cytosolic_fraction	chr6	8652268	8652275	8652268	+	High_confidence	21	21	34	1.079412	3.596684	chr6	8652094	8652454	LTR|ERVL-MaLR|MLT1A	+	chr6	8652261	8653814	AL591485.1|ENST00000646741.1	+	8652261,8653544	8653136,8653814	0.911765
SK_MEL_5_cytosolic_fraction	chr4	58803477	58803478	58803477	-	RAMPAGE_only	252	257	302	9.587720	6.636453	chr4	58803319	58803671	LTR|ERVL-MaLR|THE1A	-	chr4	58780625	58984141	AC017091.1|ENST00000513551.1	-	58780625,58782544,58784035,58977013,58984005	58781126,58782642,58784261,58977113,58984141	0.940397
SK_MEL_5_cytosolic_fraction	chr18	12606749	12606764	12606763	-	RAMPAGE_only	9	10	22	0.698443	4.297079	chr18	12606533	12606830	SINE|Alu|AluSz6	-	chr18	12449505	12636340	SPIRE1|ENST00000440472.6	-	12449505,12452254,12453067,12454345,12463350,12464867,12479698,12493071,12496015,12506476,12512453,12535475,12546673,12588375,12635061,12636323	12449896,12452443,12453138,12454483,12463493,12464958,12479871,12493201,12496102,12506641,12512531,12535601,12546904,12588419,12635096,12636340	0.909091
SK_MEL_5_cytosolic_fraction	chr7	22832133	22832165	22832164	-	RAMPAGE_only	9	11	30	0.952422	4.240224	chr7	22832142	22832425	SINE|Alu|AluJr4	-	chr7	22812631	22822852	TOMM7|NM_019059.3	-	22812631,22817999,22822676	22813185,22818048,22822852	1.000000
SK_MEL_5_cytosolic_fraction	chr5	122383565	122383566	122383565	-	High_confidence	9	9	11	0.349222	3.027169	chr5	122377544	122383563	LINE|L1|L1PA2	-	chr5	122369761	122383568	AC119150.1|ENST00000507143.1	-	122369761,122371356,122371705,122383469	122370015,122371494,122371777,122383568	1.000000
SK_MEL_5_cytosolic_fraction	chr12	100592167	100592243	100592167	+	RAMPAGE_only	35	37	65	2.063582	5.304996	chr12	100592089	100592217	LINE|L1|L1ME3C	-	chr12	100593617	100624905	GAS2L3|ENST00000537247.5	+	100593617,100594874,100600381,100601637,100611007,100611999,100617743,100618448,100622274,100623561	100593973,100594922,100600550,100601753,100611263,100612141,100617807,100618587,100622382,100624905	0.661538
SK_MEL_5_cytosolic_fraction	chr11	108224074	108224093	108224074	+	High_confidence	204	206	374	11.873534	6.287343	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.831551
SK_MEL_5_cytosolic_fraction	chr11	69425632	69425678	69425632	+	High_confidence	4	4	18	0.571453	3.155222	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425670	69429621	LOC102724265|NM_001319657.1	+	69425670,69427362	69425806,69429621	1.000000
SK_MEL_5_cytosolic_fraction	chr5	14202692	14202801	14202692	+	High_confidence	40	40	177	5.619293	6.367509	chr5	14202502	14202919	LTR|ERVL-MaLR|THE1B	+	chr5	14202706	14290887	MSTRG.23019.7	+	14202706,14203222,14270824,14280321,14286870,14290715	14202836,14203314,14270899,14280436,14287063,14290887	0.694915
SK_MEL_5_cytosolic_fraction	chr15	74738466	74738467	74738466	-	RAMPAGE_only	11	12	13	0.412716	3.418296	chr15	74738305	74738647	LTR|ERVL-MaLR|THE1B	-	chr15	74719541	74725610	CYP1A1|ENST00000379727.7	-	74719541,74720966,74721198,74721413,74721590,74722272,74725440	74720774,74721053,74721322,74721503,74721717,74723126,74725610	0.923077
SK_MEL_5_cytosolic_fraction	chr11	38593635	38593683	38593635	-	RAMPAGE_only	58	61	209	6.635210	6.148106	chr11	38593474	38593835	LTR|ERVL-MaLR|MLT1A0	-	chr11	38579957	38580267	MSTRG.4582.1	-	38579957	38580267	0.703349
SK_MEL_5_cytosolic_fraction	chr7	111392899	111393036	111392958	-	High_confidence	365	366	1648	52.319742	7.763361	chr7	111392522	111393282	LTR|ERVL|MER21C	-	chr7	110663425	111392915	MSTRG.27052.6	-	110663425,110886592,110963499,111274927,111390570,111391837,111392801	110663721,110886695,110963565,111275153,111390694,111392019,111392915	0.623786
SK_MEL_5_cytosolic_fraction	chr14	32075821	32075880	32075879	+	High_confidence	57	59	164	5.206576	6.452871	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32075840	32157216	MSTRG.8248.1	+	32075840,32090501,32117139,32146262,32149901,32152422,32154620	32076217,32094386,32117287,32146340,32150033,32152528,32157216	0.853659
SK_MEL_5_cytosolic_fraction	chr4	158173024	158173025	158173024	-	High_confidence	18	19	19	0.603201	3.905765	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.947368
SK_MEL_5_cytosolic_fraction	chr12	121582278	121582286	121582278	-	High_confidence	16	20	48	1.523876	4.952591	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121429776	121582270	MSTRG.7221.6	-	121429776,121439856,121440815,121441069,121442156,121442991,121443679,121444011,121444449,121445274,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549459,121574546,121575780,121578801,121580785,121582235	121430469,121440075,121440977,121441233,121442836,121443030,121443793,121444272,121444536,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548983,121549638,121574593,121575859,121578946,121581134,121582270	0.958333
SK_MEL_5_cytosolic_fraction	chr10	95711724	95711756	95711739	+	High_confidence	10	12	41	1.301644	4.548741	chr10	95711747	95711902	LTR|ERV1|MER39B	+	chr10	95711778	95869695	ENTPD1|ENST00000453258.6	+	95711778,95823236,95839690,95842343,95844475,95845356,95847445,95860468,95864723,95866176	95711993,95823364,95839808,95842494,95844635,95845596,95847706,95860582,95864861,95869695	1.000000
SK_MEL_5_cytosolic_fraction	chr14	49789498	49789552	49789498	-	RAMPAGE_only	4	4	24	0.761938	4.186704	chr14	49789398	49789451	LINE|L2|L2a	-	chr14	49784904	49787174	NEMF|ENST00000554275.1	-	49784904,49786717	49785320,49787174	0.666667
SK_MEL_5_cytosolic_fraction	chr12	31121277	31121302	31121277	-	RAMPAGE_only	3	3	13	0.412716	2.623517	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119151	MSTRG.6148.4	-	31111658,31112213,31112980,31114395,31114836,31116356,31117040,31118896	31111809,31112288,31113083,31114464,31114927,31116469,31117164,31119151	0.846154
SK_MEL_5_cytosolic_fraction	chr7	154928480	154928506	154928503	+	High_confidence	30	30	77	2.444551	5.308473	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.818182
SK_MEL_5_cytosolic_fraction	chr15	32677522	32677555	32677539	+	High_confidence	2	2	9	0.285727	2.500000	chr15	32677294	32677614	LTR?|LTR?|MamRep605	+	chr15	32677559	32696626	SCG5|ENST00000498069.5	+	32677559,32679765,32684559,32691709,32696513	32677744,32679915,32684669,32691763,32696626	0.888889
SK_MEL_5_cytosolic_fraction	chr13	67121073	67121079	67121076	+	High_confidence	3	4	12	0.380969	3.418296	chr13	67120999	67121128	LINE|L2|L2c	-	chr13	67121080	67156624	AL160254.1|ENST00000648561.1	+	67121080,67121255,67155990	67121128,67121325,67156624	0.833333
SK_MEL_5_cytosolic_fraction	chr8	83403738	83403739	83403738	+	High_confidence	12536	12563	12931	410.525843	6.710533	chr8	83402757	83404051	LTR|ERV1|LTR12C	+	chr8	83403757	83408900	LINC01419|NR_122034.1	+	83403757,83407691	83404069,83408900	0.905189
SK_MEL_5_cytosolic_fraction	chr4	28402876	28402928	28402888	-	High_confidence	18	18	107	3.396974	5.932602	chr4	28402359	28403146	LTR|ERV1|LTR1A2	-	chr4	28316851	28402864	MSTRG.21945.1	-	28316851,28370699,28393203,28394195,28402651	28317538,28370809,28393350,28394300,28402864	0.906542
SK_MEL_5_cytosolic_fraction	chr10	98153950	98153962	98153961	+	RAMPAGE_only	4	6	14	0.444464	3.546594	chr10	98153910	98154027	LTR|ERVL-MaLR|MLT1J	-	chr10	98156348	98244869	MSTRG.3784.6	+	98156348,98157462,98162882,98163292,98208100,98231511,98234445,98235424,98236023,98244090	98156421,98157573,98162975,98163397,98209899,98231687,98234516,98235520,98236164,98244869	0.785714
SK_MEL_5_cytosolic_fraction	chr14	75847800	75847825	75847824	+	RAMPAGE_only	200	212	359	11.397323	3.767601	chr14	75847754	75847919	DNA|hAT-Charlie|MER5A	-	chr14	75882718	75902504	TTLL5|ENST00000557219.1	+	75882718,75902141	75882902,75902504	0.888579
SK_MEL_5_cytosolic_fraction	chr19	3575014	3575015	3575014	+	High_confidence	10	12	13	0.412716	3.418296	chr19	3574715	3575018	SINE|Alu|AluSz	-	chr19	3575541	3576987	HMG20B|ENST00000483417.1	+	3575541,3576260,3576891	3575660,3576625,3576987	0.615385
SK_MEL_5_cytosolic_fraction	chr7	47793285	47793333	47793313	-	RAMPAGE_only	10	10	30	0.952422	3.797903	chr7	47793280	47793633	LTR|ERVL-MaLR|THE1A	+	chr7	47774651	47948474	PKD1L1|NM_138295.3	-	47774651,47792626,47795988,47800648,47803209,47808246,47809472,47811816,47813120,47813930,47815333,47821075,47827349,47829424,47830039,47831216,47833089,47834338,47834966,47835132,47836920,47839445,47840460,47842961,47844994,47846878,47853126,47854881,47855154,47857604,47858672,47865215,47866418,47873898,47876096,47877488,47880727,47881908,47884597,47885685,47887989,47890541,47893877,47897987,47902378,47904377,47905156,47905842,47908076,47915431,47929203,47931103,47931935,47936845,47940192,47943395,47948396	47775166,47792797,47796150,47800879,47803344,47808387,47809577,47812051,47813293,47814014,47815457,47821186,47827468,47829601,47830124,47831352,47833252,47834385,47835039,47835243,47837094,47839662,47840567,47843169,47845078,47847071,47853227,47855039,47855265,47857832,47858885,47865272,47866614,47874010,47876217,47877631,47880805,47882085,47884657,47886054,47888150,47890763,47894059,47898194,47902511,47904617,47905325,47905962,47908250,47915599,47929526,47931321,47932056,47936958,47940317,47943511,47948474	0.933333
SK_MEL_5_cytosolic_fraction	chr2	37366815	37366816	37366815	+	High_confidence	8	8	10	0.317474	3.169925	chr2	37366583	37366947	LTR|ERVL|LTR16A	-	chr2	37367122	37373030	QPCT|ENST00000469098.1	+	37367122,37369684,37372355,37372681	37367408,37369784,37372472,37373030	0.700000
SK_MEL_5_cytosolic_fraction	chr12	31959160	31959179	31959178	+	High_confidence	4	4	9	0.285727	2.750000	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31981060	KIAA1551|ENST00000540924.5	+	31959407,31960776,31980877	31959491,31960871,31981060	0.555556
SK_MEL_5_cytosolic_fraction	chr11	4129109	4129127	4129116	+	RAMPAGE_only	6	6	13	0.412716	3.392747	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	1.000000
SK_MEL_5_cytosolic_fraction	chr1	180558963	180558964	180558963	+	High_confidence	211	219	225	7.143169	5.987452	chr1	180558768	180559133	LTR|ERVL-MaLR|THE1A	+	chr1	180558973	180566518	OVAAL|NR_125716.1	+	180558973,180562203,180565250	180559055,180562344,180566518	0.960000
SK_MEL_5_cytosolic_fraction	chr3	183452099	183452100	183452099	+	RAMPAGE_only	6	7	9	0.285727	2.500000	chr3	183452059	183452354	SINE|Alu|AluSz6	-	chr3	183447650	183455625	LINC00888|ENST00000468380.1	+	183447650,183452077,183454011,183455198	183447947,183452512,183454093,183455625	0.888889
SK_MEL_5_cytosolic_fraction	chr7	29208991	29209007	29209006	-	High_confidence	3	3	8	0.253979	2.807355	chr7	29208844	29209231	LTR|ERVL-MaLR|MLT1L	-	chr7	29199039	29208970	LOC102724484|NR_120522.1	-	29199039,29200691,29208812	29200123,29200747,29208970	0.750000
SK_MEL_5_cytosolic_fraction	chr14	77736978	77737043	77736987	-	High_confidence	4	4	23	0.730191	3.177566	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.869565
SK_MEL_5_cytosolic_fraction	chr15	92724252	92724332	92724331	-	High_confidence	172	177	454	14.413327	7.214033	chr15	92724218	92724390	LTR|ERVL|LTR33	-	chr15	92617446	92724277	MSTRG.10274.2	-	92617446,92630213,92699039,92724161	92619459,92630345,92699163,92724277	0.585903
SK_MEL_5_cytosolic_fraction	chr17	50271487	50271488	50271487	+	High_confidence	4	7	7	0.222232	2.807355	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
SK_MEL_5_cytosolic_fraction	chr15	72376482	72376497	72376492	-	High_confidence	2	2	10	0.317474	3.169925	chr15	72376327	72376445	LINE|L2|L2c	-	chr15	72340918	72376476	HEXA|ENST00000268097.9	-	72340918,72345445,72346234,72346526,72347685,72348047,72349078,72350517,72351132,72353067,72353690,72355558,72356524,72375719	72344140,72345550,72346325,72346710,72347758,72348134,72349259,72350650,72351234,72353178,72353737,72355624,72356617,72376476	0.900000
SK_MEL_5_cytosolic_fraction	chrX	97160302	97160345	97160342	+	RAMPAGE_only	6	6	21	0.666696	4.106603	chrX	97159909	97160444	LTR|ERV1|LTR26	-	chrX	96685016	97469765	DIAPH2|ENST00000373054.5	+	96685016,96735757,96738585,96758153,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348117,97383908,97429649,97469693	96685190,96735790,96738762,96758258,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247841,97348280,97384044,97429745,97469765	1.000000
SK_MEL_5_cytosolic_fraction	chr12	10363854	10363873	10363872	+	High_confidence	4	4	9	0.285727	2.750000	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.888889
SK_MEL_5_cytosolic_fraction	chr12	101713502	101713534	101713519	+	RAMPAGE_only	4	4	18	0.571453	3.734522	chr12	101712325	101713727	LINE|L1|L1MEc	-	chr12	101714527	101723254	CHPT1|ENST00000552329.1	+	101714527,101716727,101717236,101720122,101723167	101714645,101716812,101717394,101720254,101723254	0.611111
SK_MEL_5_cytosolic_fraction	chr12	5121972	5121985	5121972	+	RAMPAGE_only	4	5	12	0.380969	3.277613	chr12	5116426	5122428	LINE|L1|L1PA2	-	chr12	5290479	5378354	AC006206.2|ENST00000537192.1	+	5290479,5292104,5367802,5371535,5377776	5290624,5292178,5367934,5371598,5378354	0.666667
SK_MEL_5_cytosolic_fraction	chr7	40808923	40808924	40808923	+	RAMPAGE_only	19	20	20	0.634948	4.037401	chr7	40808940	40809038	SINE|MIR|MIR3	+	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.900000
SK_MEL_5_cytosolic_fraction	chr1	154975497	154975530	154975524	+	High_confidence	12	12	49	1.555623	4.434819	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.836735
SK_MEL_5_cytosolic_fraction	chr9	83026526	83026556	83026555	-	RAMPAGE_only	6	8	21	0.666696	3.844233	chr9	83026313	83026686	LTR|ERVL-MaLR|THE1D	-	chr9	82979584	83063128	RASEF|NM_152573.3	-	82979584,82990390,82992905,82997011,82998364,83000168,83000432,83000895,83004497,83005415,83007436,83009640,83012433,83015804,83022335,83025774,83062436	82982782,82990467,82993025,82997126,82998446,83000316,83000570,83001130,83004586,83005500,83007505,83009756,83012511,83015900,83022426,83025921,83063128	1.000000
SK_MEL_5_cytosolic_fraction	chr8	53945305	53945316	53945315	+	High_confidence	9	9	15	0.476211	3.378783	chr8	53944745	53945626	LINE|L1|L1MB7	+	chr8	53945324	53958697	RGS20|ENST00000517405.1	+	53945324,53946664,53954075,53958269	53945370,53946748,53954310,53958697	0.733333
SK_MEL_5_cytosolic_fraction	chr20	30611724	30611744	30611743	-	High_confidence	14	14	30	0.952422	3.177669	chr20	30611589	30611771	LTR|ERVL|LTR33	+	chr20	30610822	30611661	MSTRG.18330.1	-	30610822,30611464	30611052,30611661	0.733333
SK_MEL_5_cytosolic_fraction	chr14	24995141	24995207	24995188	-	High_confidence	8	8	60	1.904845	5.503857	chr14	24995038	24995370	LTR|ERVL-MaLR|MLT1A0	-	chr14	24812491	24995195	MSTRG.8183.6	-	24812491,24819036,24855935,24857026,24974664,24994863,24995090	24812732,24819194,24856101,24857157,24974850,24994984,24995195	0.916667
SK_MEL_5_cytosolic_fraction	chr13	24968471	24968484	24968471	-	High_confidence	10	10	35	1.111160	4.879143	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24933005	24968453	TPTE2P1|ENST00000649209.1	-	24933005,24937576,24940506,24941986,24942931,24951396,24951594,24961748,24967391,24968205	24934663,24937770,24940785,24942108,24943021,24951488,24951770,24961849,24967453,24968453	0.542857
SK_MEL_5_cytosolic_fraction	chr18	14828088	14828107	14828088	+	RAMPAGE_only	7	7	13	0.412716	3.084963	chr18	14828079	14828219	SINE|Alu|FLAM_C	-	chr18	14837148	14852738	ANKRD30B|ENST00000320584.8	+	14837148,14837614,14840587,14842896,14843023,14848715,14850213,14851508	14837289,14837676,14840678,14842925,14843096,14848929,14850382,14852738	0.923077
SK_MEL_5_cytosolic_fraction	chr1	238486003	238486037	238486003	-	High_confidence	4	4	22	0.698443	4.321928	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480383	238486017	LINC01139|NR_015407.1	-	238480383,238485784	238481681,238486017	0.818182
SK_MEL_5_cytosolic_fraction	chr18	12608051	12608074	12608051	-	RAMPAGE_only	2	3	9	0.285727	2.725481	chr18	12607874	12608174	SINE|Alu|AluY	+	chr18	12449505	12636340	SPIRE1|ENST00000440472.6	-	12449505,12452254,12453067,12454345,12463350,12464867,12479698,12493071,12496015,12506476,12512453,12535475,12546673,12588375,12635061,12636323	12449896,12452443,12453138,12454483,12463493,12464958,12479871,12493201,12496102,12506641,12512531,12535601,12546904,12588419,12635096,12636340	1.000000
SK_MEL_5_cytosolic_fraction	chr5	42759709	42759718	42759712	+	RAMPAGE_only	23	28	56	1.777855	5.223111	chr5	42759476	42759998	DNA|TcMar-Tigger|MER44B	+	chr5	42756817	42802437	CCDC152|NM_001134848.1	+	42756817,42759119,42762442,42769596,42779457,42783473,42796828,42799374,42799658	42756885,42759208,42762548,42769665,42779522,42783576,42796956,42799458,42802437	0.946429
SK_MEL_5_cytosolic_fraction	chr8	54162080	54162081	54162080	+	High_confidence	16	18	22	0.698443	4.070656	chr8	54161885	54162241	LTR|ERVL-MaLR|THE1A	+	chr8	54162065	54208171	MSTRG.28017.1	+	54162065,54191582,54207852	54162165,54191739,54208171	0.863636
SK_MEL_5_cytosolic_fraction	chr14	101730404	101730406	101730405	+	High_confidence	31	64	85	2.698530	5.680283	chr14	101730210	101730580	LTR|ERVL-MaLR|THE1B	+	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.988235
SK_MEL_5_cytosolic_fraction	chr18	14848070	14848102	14848101	+	RAMPAGE_only	4	5	17	0.539706	3.750000	chr18	14847634	14848304	LINE|L1|L1MEc	-	chr18	14837148	14852738	ANKRD30B|ENST00000320584.8	+	14837148,14837614,14840587,14842896,14843023,14848715,14850213,14851508	14837289,14837676,14840678,14842925,14843096,14848929,14850382,14852738	0.941176
SK_MEL_5_cytosolic_fraction	chr20	36847183	36847209	36847191	-	RAMPAGE_only	4	4	12	0.380969	3.251629	chr20	36847022	36847259	SINE|MIR|MIRb	-	chr20	36828596	36839402	SOGA1|ENST00000463491.1	-	36828596,36839216	36829212,36839402	0.666667
SK_MEL_5_cytosolic_fraction	chr9	128185577	128185578	128185577	-	RAMPAGE_only	8	8	10	0.317474	2.721928	chr9	128185400	128185541	SINE|MIR|MIR3	-	chr9	128166151	128190710	CIZ1|ENST00000415526.5	-	128166151,128166758,128167094,128169051,128169405,128170019,128176350,128177565,128178368,128178708,128180414,128180720,128185546,128190328,128190687	128166406,128166880,128167164,128169201,128169519,128170107,128176475,128177763,128178490,128179415,128180523,128180799,128185776,128190444,128190710	1.000000
SK_MEL_5_cytosolic_fraction	chr11	58577896	58577909	58577896	+	RAMPAGE_only	6	10	16	0.507959	3.875000	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58579110	58621042	ZFP91|ENST00000316059.6	+	58579110,58584855,58609829,58610297,58610949,58611603,58612277,58612761,58614228,58616715,58617195	58579622,58584884,58610039,58610334,58611054,58611738,58612328,58612840,58614343,58616815,58621042	1.000000
SK_MEL_5_cytosolic_fraction	chr11	89191719	89191736	89191735	+	RAMPAGE_only	6	6	15	0.476211	3.664498	chr11	89191611	89191750	SINE|Alu|AluJo	+	chr11	89177892	89295759	MSTRG.5318.3	+	89177892,89179314,89191201,89227822,89284772,89295142	89178772,89179385,89191418,89227970,89284954,89295759	0.933333
SK_MEL_5_cytosolic_fraction	chr13	39588058	39588094	39588080	-	RAMPAGE_only	9	9	42	1.333391	4.855790	chr13	39587600	39588086	LTR|ERVL|LTR33A	-	chr13	39342891	39603171	LHFPL6|ENST00000379589.3	-	39342891,39378427,39600831,39602882	39344054,39378526,39601390,39603171	0.904762
SK_MEL_5_cytosolic_fraction	chr4	37001803	37001812	37001805	+	High_confidence	291	325	524	16.635646	6.609917	chr4	37001705	37002035	LTR|ERV1|MER48	+	chr4	37001815	37020708	AL136537.2|ENST00000562049.1	+	37001815,37018317	37001895,37020708	0.952290
SK_MEL_5_cytosolic_fraction	chr14	24595845	24595872	24595867	+	High_confidence	216	258	1061	33.684009	6.025690	chr14	24593738	24596300	LINE|L1|L1PB1	-	chr14	24595824	24658589	MSTRG.8184.8	+	24595824,24622967,24634295,24638594,24639180,24639902,24643264,24654646,24657524	24596002,24623126,24634577,24638692,24639245,24640628,24645092,24654707,24658589	0.892554
SK_MEL_5_cytosolic_fraction	chr13	114238084	114238085	114238084	+	RAMPAGE_only	4	4	6	0.190484	2.584963	chr13	114237861	114238097	LINE|L2|L2c	+	chr13	114236067	114262979	MSTRG.8059.10	+	114236067,114236644,114236798,114238989,114239349,114242120,114243855,114244889,114245999,114246930,114250548,114257077,114259334,114261886,114262878	114236136,114236699,114236896,114239028,114239490,114243348,114243989,114244969,114246049,114247004,114250674,114257230,114259398,114261948,114262979	0.500000
SK_MEL_5_cytosolic_fraction	chr14	102235221	102235280	102235221	-	High_confidence	11	13	44	1.396886	4.726144	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102229432	102235063	MOK|ENST00000522537.5	-	102229432,102232534,102233687,102234956	102229657,102232708,102233789,102235063	0.659091
SK_MEL_5_cytosolic_fraction	chr11	64226142	64226180	64226158	-	High_confidence	90	92	486	15.429244	6.775602	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.979424
SK_MEL_5_cytosolic_fraction	chr19	55280199	55280232	55280217	-	High_confidence	18	23	49	1.555623	4.033932	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
SK_MEL_5_cytosolic_fraction	chr2	174547245	174547246	174547245	+	High_confidence	7	7	7	0.222232	2.807355	chr2	174547163	174547404	LTR|ERV1|LTR78	+	chr2	174547373	174665689	AC010894.3|ENST00000412835.1	+	174547373,174655497,174665176	174547477,174656285,174665689	0.571429
SK_MEL_5_cytosolic_fraction	chr2	74506480	74506494	74506493	-	High_confidence	13	13	29	0.920675	3.792842	chr2	74506295	74506592	SINE|Alu|AluYh3	+	chr2	74505042	74507151	PCGF1|ENST00000465993.5	-	74505042,74505338,74505551,74505736,74506731,74507041	74505190,74505419,74505612,74505770,74506884,74507151	0.689655
SK_MEL_5_cytosolic_fraction	chr15	32910491	32910506	32910491	-	RAMPAGE_only	5	5	13	0.412716	3.584963	chr15	32910419	32910514	LINE|CR1|L3	-	chr15	32810894	32926260	MSTRG.9322.7	-	32810894,32857014,32888171,32898833,32899978,32901910,32908489,32910473,32926173	32811111,32857107,32888292,32898893,32900125,32902040,32908578,32910535,32926260	0.692308
SK_MEL_5_cytosolic_fraction	chr1	226542728	226542739	226542738	-	High_confidence	140	151	222	7.047926	5.461833	chr1	226542461	226543018	LTR|ERVL|LTR66	-	chr1	226535729	226542742	MSTRG.2731.2	-	226535729,226541136,226542638	226538699,226541255,226542742	0.923423
SK_MEL_5_cytosolic_fraction	chr5	128135561	128135598	128135596	+	RAMPAGE_only	6	9	31	0.984170	3.950344	chr5	128135517	128135661	LINE|L2|L2a	-	chr5	128083847	128188442	SLC12A2|ENST00000343225.4	+	128083847,128112813,128114211,128114585,128131066,128134164,128135699,128138596,128138823,128141829,128147621,128148753,128149996,128151240,128152705,128158052,128161659,128167760,128171666,128174540,128178566,128180882,128182854,128184365,128184788,128186495	128084710,128112933,128114287,128114681,128131206,128134275,128135808,128138724,128138908,128141981,128147729,128148877,128150098,128151396,128152805,128158164,128161800,128167867,128171746,128174666,128178689,128180994,128182941,128184501,128184856,128188442	1.000000
SK_MEL_5_cytosolic_fraction	chr10	58320856	58320897	58320884	+	RAMPAGE_only	13	14	65	2.063582	4.612645	chr10	58320721	58321272	LTR|ERVL|MLT2B3	+	chr10	58334974	58370753	UBE2D1|ENST00000373910.8	+	58334974,58361337,58361494,58363608,58364770,58367922,58368719	58335225,58361401,58361526,58363686,58364876,58368016,58370753	0.861538
SK_MEL_5_cytosolic_fraction	chr1	210439587	210439588	210439587	+	High_confidence	5	6	7	0.222232	2.807355	chr1	210438946	210439615	LTR|ERVL|ERVL-B4-int	-	chr1	210439582	210676296	HHAT|ENST00000367009.2	+	210439582,210464504,210513152,210587897,210623525,210674287	210439753,210464655,210513188,210588099,210623670,210676296	0.857143
SK_MEL_5_cytosolic_fraction	chr12	127983337	127983394	127983393	-	High_confidence	12	12	33	1.047665	3.926109	chr12	127983198	127984510	LTR|ERV1|LTR12C	+	chr12	127883988	127983891	LINC00508|NR_126452.2	-	127883988,127940573,127983066,127983801	127885105,127940735,127983125,127983891	0.909091
SK_MEL_5_cytosolic_fraction	chr7	47795357	47795358	47795357	+	High_confidence	13	13	15	0.476211	3.906891	chr7	47795165	47795519	LTR|ERVL-MaLR|THE1A	+	chr7	47795423	47819847	C7orf69|ENST00000418326.3	+	47795423,47813425,47818025,47819506	47795443,47813569,47818195,47819847	0.666667
SK_MEL_5_cytosolic_fraction	chr1	194347919	194347920	194347919	+	RAMPAGE_only	23	26	28	0.888928	4.363713	chr1	194347724	194348076	LTR|ERVL-MaLR|THE1A	+	chr1	194350942	194352426	AL513348.1|ENST00000435554.1	+	194350942,194352282	194351238,194352426	0.607143
SK_MEL_5_cytosolic_fraction	chrX	21770836	21770853	21770852	-	High_confidence	2	3	6	0.190484	2.584963	chrX	21770311	21772190	LINE|L1|L1PB1	+	chrX	21705971	21770869	MSTRG.30128.1	-	21705971,21737548,21743749,21754245,21757941,21761207,21770498	21706394,21737697,21743836,21754302,21758139,21761942,21770869	1.000000
SK_MEL_5_cytosolic_fraction	chr2	26243156	26243158	26243156	+	High_confidence	2	4	7	0.222232	2.807355	chr2	26243090	26243217	SINE|MIR|MIR3	-	chr2	26243169	26278620	HADHB|ENST00000448743.5	+	26243169,26254246,26254429,26263379,26269952,26273650,26277072,26278613	26243269,26254318,26254474,26263479,26269997,26273750,26277160,26278620	0.714286
SK_MEL_5_cytosolic_fraction	chr1	248731098	248731121	248731098	-	RAMPAGE_only	55	55	98	3.111247	5.751420	chr1	248730810	248731492	LTR|ERV1|MER50B	-	chr1	248718648	248745279	LYPD8|ENST00000566597.5	-	248718648,248721269,248745141	248718807,248722205,248745279	0.704082
SK_MEL_5_cytosolic_fraction	chr22	50757212	50757261	50757247	+	High_confidence	13	13	51	1.619118	4.595714	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.823529
SK_MEL_5_cytosolic_fraction	chr4	76017419	76017434	76017433	-	RAMPAGE_only	3	3	10	0.317474	2.503258	chr4	76016227	76017972	LINE|L1|L1M1	-	chr4	76001341	76007523	CXCL9|NM_002416.2	-	76001341,76004808,76006147,76007385	76003699,76004893,76006274,76007523	0.900000
SK_MEL_5_cytosolic_fraction	chr2	73640870	73640974	73640870	+	High_confidence	6	6	52	1.650866	4.359080	chr2	73640769	73640932	LTR|ERVL-MaLR|MLT1J2	+	chr2	73640864	73641327	MSTRG.16625.1	+	73640864	73641327	0.711538
SK_MEL_5_cytosolic_fraction	chr8	28090231	28090232	28090231	+	High_confidence	25	26	35	1.111160	4.261725	chr8	28089941	28090482	LTR|ERVL|LTR66	+	chr8	28090230	28191156	ELP3|ENST00000521015.5	+	28090230,28097218,28099827,28106712,28107912,28110369,28113018,28129501,28132277,28137697,28155941,28158567,28160228,28161996,28189648	28090332,28097318,28099966,28106783,28107976,28110438,28113173,28129663,28132404,28137891,28156032,28158633,28160456,28162078,28191156	1.000000
SK_MEL_5_cytosolic_fraction	chr20	2870674	2870748	2870674	+	RAMPAGE_only	7	9	59	1.873098	5.301886	chr20	2870623	2870697	SINE|MIR|MIR1_Amn	-	chr20	2873419	3005104	PTPRA|ENST00000455631.5	+	2873419,2964271,2964860,2986764,2988031,2988337,3005055	2873760,2964350,2965202,2986849,2988105,2988474,3005104	0.949153
SK_MEL_5_cytosolic_fraction	chr7	107580552	107580553	107580552	+	High_confidence	7	7	7	0.222232	2.521641	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	1.000000
SK_MEL_5_cytosolic_fraction	chr18	42115581	42115587	42115586	-	High_confidence	137	161	254	8.063844	7.025844	chr18	42115418	42115780	LTR|ERVL-MaLR|THE1B	-	chr18	42104977	42115572	MSTRG.14117.1	-	42104977,42109196,42115502	42105303,42109315,42115572	0.555118
SK_MEL_5_cytosolic_fraction	chr6	73729139	73729160	73729159	+	RAMPAGE_only	7	7	18	0.571453	3.219528	chr6	73728830	73729330	LTR|ERVL-MaLR|MLT1F1	-	chr6	73722940	73810172	CD109|ENST00000649530.1	+	73722940,73723250,73730343,73736382,73756642,73758943,73762383,73762740,73763575,73765929,73766758,73766947,73768054,73771428,73780423,73781258,73782613,73783706,73785363,73787233,73788467,73792625,73803219,73806843,73808082,73809983	73723159,73723279,73730574,73736508,73756682,73759028,73762480,73762882,73763685,73766154,73766860,73767010,73768231,73771581,73780498,73781319,73782755,73783824,73785477,73787452,73788612,73792802,73803301,73807072,73808248,73810172	0.944444
SK_MEL_5_cytosolic_fraction	chr1	76034000	76034018	76034010	+	RAMPAGE_only	14	14	60	1.904845	4.783823	chr1	76033790	76034164	LTR|ERVL-MaLR|MLT1B	+	chr1	76041690	76066228	AC092813.2|ENST00000434540.1	+	76041690,76066037	76041898,76066228	0.783333
SK_MEL_5_cytosolic_fraction	chr3	169812897	169812904	169812903	-	High_confidence	11	11	18	0.571453	3.616875	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.944444
SK_MEL_5_cytosolic_fraction	chr14	63101934	63101973	63101968	-	High_confidence	8	9	39	1.238149	4.574054	chr14	63101880	63102189	SINE|Alu|AluY	+	chr14	62949817	63102037	KCNH5|ENST00000394964.3	-	62949817,62980871,62987071,63001330,63006365,63016830,63101799	62950559,62981264,62987187,63001459,63006472,63016954,63102037	0.641026
SK_MEL_5_cytosolic_fraction	chr8	42188962	42188994	42188962	-	High_confidence	5	5	11	0.349222	2.921928	chr8	42188619	42188914	SINE|Alu|AluJo	-	chr8	42184694	42188489	PLAT|ENST00000521647.1	-	42184694,42187905	42187572,42188489	0.545455
SK_MEL_5_cytosolic_fraction	chr7	92461203	92461227	92461226	+	RAMPAGE_only	3	3	11	0.349222	3.321928	chr7	92461138	92461486	LTR|ERVL|MLT2F	+	chr7	92457563	92491610	AC007566.1|ENST00000427458.1	+	92457563,92461318,92462957,92465101,92491242	92457589,92461410,92463026,92465189,92491610	0.636364
SK_MEL_5_cytosolic_fraction	chr16	30623846	30623885	30623884	-	High_confidence	4	4	17	0.539706	3.969816	chr16	30618766	30623834	LTR|ERVK|HERVK3-int	-	chr16	30602557	30623948	MSTRG.11066.1	-	30602557,30609524,30609836,30623739	30605447,30609638,30610782,30623948	1.000000
SK_MEL_5_cytosolic_fraction	chr5	140655869	140655989	140655988	+	RAMPAGE_only	12	13	116	3.682700	5.450257	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.974138
SK_MEL_5_cytosolic_fraction	chr4	170088794	170088818	170088794	-	High_confidence	3	3	6	0.190484	2.584963	chr4	170088681	170089067	LTR|ERVL-MaLR|MLT1A1	+	chr4	170070476	170088430	AADAT|ENST00000505906.1	-	170070476,170073135,170078508,170087115,170088395	170070652,170073345,170078583,170087248,170088430	0.666667
SK_MEL_5_cytosolic_fraction	chr18	1522233	1522240	1522239	-	High_confidence	32	43	63	2.000087	4.730783	chr18	1516189	1522240	LINE|L1|L1PA2	-	chr18	1513897	1522238	MSTRG.13751.1	-	1513897,1514276,1522143	1514047,1514413,1522238	0.952381
SK_MEL_5_cytosolic_fraction	chr17	47067487	47067513	47067498	-	High_confidence	244	275	1181	37.493699	6.302332	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.889924
SK_MEL_5_cytosolic_fraction	chr20	8600660	8600661	8600660	+	High_confidence	6	6	7	0.222232	2.584963	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.571429
SK_MEL_5_cytosolic_fraction	chr11	32132656	32132657	32132656	+	High_confidence	60	66	85	2.698530	3.734067	chr11	32132461	32132828	LTR|ERVL-MaLR|THE1B	+	chr11	32132698	32143579	AL078612.2|ENST00000525133.1	+	32132698,32137120,32143143	32132786,32137242,32143579	0.941176
SK_MEL_5_cytosolic_fraction	chr4	173608951	173608987	173608951	+	RAMPAGE_only	4	6	22	0.698443	4.070656	chr4	173603062	173609186	LINE|L1|L1PA4	-	chr4	173528698	173659696	HAND2-AS1|ENST00000647106.1	+	173528698,173634610,173658718	173528839,173634744,173659696	0.772727
SK_MEL_5_cytosolic_fraction	chr19	40772059	40772060	40772059	+	RAMPAGE_only	1235	1235	1235	39.208059	4.449667	chr19	40771932	40772225	SINE|Alu|AluJo	-	chr19	40775176	40777493	MIA|NM_001202553.1	+	40775176,40775536,40775751,40776968,40777396	40775211,40775669,40775885,40777079,40777493	0.998381
SK_MEL_5_cytosolic_fraction	chr2	200889279	200889318	200889293	-	High_confidence	33	33	145	4.603375	5.985651	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.668966
SK_MEL_5_cytosolic_fraction	chr13	45376994	45377006	45376994	+	RAMPAGE_only	2	2	8	0.253979	2.521641	chr13	45376606	45377218	LTR|ERV1|HERVE-int	-	chr13	45378529	45390879	TPT1-AS1|ENST00000520585.5	+	45378529,45379194,45379898,45383090,45383759,45389734,45390757	45378671,45379335,45380001,45383235,45383838,45389820,45390879	0.750000
SK_MEL_5_cytosolic_fraction	chr7	4591104	4591115	4591114	-	RAMPAGE_only	37	48	102	3.238236	5.548180	chr7	4590929	4591897	LTR|ERVK|LTR5_Hs	-	chr7	4581299	4600398	MSTRG.26037.1	-	4581299,4585186,4590821,4599324	4583487,4585464,4593968,4600398	0.803922
SK_MEL_5_cytosolic_fraction	chr21	8351847	8351848	8351847	-	RAMPAGE_only	220	246	246	7.809864	5.976725	chr21	8350922	8352925	Retroposon|SVA|SVA_D	-	chr21	8210383	8211306	FP671120.3|ENST00000631211.1	-	8210383	8211306	0.605691
SK_MEL_5_cytosolic_fraction	chr4	16016678	16016702	16016678	-	RAMPAGE_only	3	4	16	0.507959	3.875000	chr4	16016670	16017345	LINE|L1|L1MC4	+	chr4	16003266	16075778	PROM1|ENST00000511153.5	-	16003266,16006537,16008948,16013274,16016165,16018322,16023325,16024294,16025191,16033303,16038945,16055236,16075686	16003349,16006690,16009108,16013338,16016240,16018540,16023415,16024358,16025312,16033509,16039001,16055449,16075778	0.500000
SK_MEL_5_cytosolic_fraction	chr9	115744249	115744269	115744258	-	High_confidence	9	10	42	1.333391	3.919140	chr9	115743858	115744555	LTR|ERV1|MER50B	-	chr9	115739339	115744256	AL691420.1|ENST00000644298.1	-	115739339,115741461,115742952,115744156	115739874,115741562,115743070,115744256	0.809524
SK_MEL_5_cytosolic_fraction	chr18	32041845	32041898	32041872	+	High_confidence	22	24	148	4.698618	5.759841	chr18	32041620	32041929	SINE|Alu|AluYa5	-	chr18	32041905	32068550	RNF125|ENST00000583814.5	+	32041905,32045641,32068297	32042273,32045732,32068550	0.925676
SK_MEL_5_cytosolic_fraction	chr2	218287279	218287280	218287279	-	High_confidence	7	7	10	0.317474	2.947703	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.500000
SK_MEL_5_cytosolic_fraction	chr11	64242588	64242614	64242588	+	High_confidence	3	3	16	0.507959	3.452820	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
SK_MEL_5_cytosolic_fraction	chr4	49495020	49495056	49495044	-	High_confidence	71	74	232	7.365401	6.204919	chr4	49494957	49495361	LTR|ERV1|MER61C	+	chr4	49486925	49495090	MSTRG.22061.1	-	49486925,49488433,49494948	49487096,49488647,49495090	0.780172
SK_MEL_5_cytosolic_fraction	chr11	123061128	123061328	123061327	-	High_confidence	30	31	334	10.603637	6.101143	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.982036
SK_MEL_5_cytosolic_fraction	chr7	12497207	12497208	12497207	+	High_confidence	7	7	11	0.349222	3.095795	chr7	12497211	12500000	LINE|L1|L1HS	+	chr7	12497245	12541135	LOC102725191|NR_136262.1	+	12497245,12528901,12531012,12540919	12497309,12529044,12531092,12541135	0.545455
SK_MEL_5_cytosolic_fraction	chr14	53217609	53217622	53217621	+	High_confidence	6	6	11	0.349222	3.121928	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217711	53687258	AL365295.1|ENST00000456100.5	+	53217711,53318030,53369451,53687198	53218055,53318138,53369501,53687258	0.545455
SK_MEL_5_cytosolic_fraction	chr17	44689902	44689924	44689923	-	High_confidence	2	2	6	0.190484	2.584963	chr17	44689916	44690110	SINE|MIR|MIRb	-	chr17	44677436	44689797	CCDC43|NM_144609.2	-	44677436,44680584,44682002,44683871,44689549	44679043,44680643,44682138,44683959,44689797	1.000000
SK_MEL_5_cytosolic_fraction	chr3	107202966	107203000	107202999	-	RAMPAGE_only	244	408	684	21.715233	6.647767	chr3	107202830	107203195	LTR|ERVL-MaLR|THE1B	-	chr3	107111484	107240627	LINC00882|ENST00000479612.6	-	107111484,107129887,107240442	107112146,107129992,107240627	0.600877
SK_MEL_5_cytosolic_fraction	chr18	1509021	1509054	1509021	+	High_confidence	19	22	101	3.206489	6.038151	chr18	1508916	1509219	SINE|Alu|AluY	-	chr18	1509182	1647097	AC008109.1|ENST00000583163.1	+	1509182,1566451,1626238,1646514	1509223,1566524,1626367,1647097	0.504950
SK_MEL_5_cytosolic_fraction	chr6	43013359	43013393	43013392	-	High_confidence	26	26	39	1.238149	4.753226	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
SK_MEL_5_cytosolic_fraction	chr6	13794241	13794311	13794241	-	RAMPAGE_only	8	8	43	1.365139	3.814206	chr6	13794117	13794268	SINE|Alu|FLAM_C	-	chr6	13787133	13801345	MCUR1|ENST00000607303.1	-	13787133,13788645,13791877,13793893,13798832,13800340,13801287	13787355,13788704,13791992,13793947,13798904,13800382,13801345	0.883721
SK_MEL_5_cytosolic_fraction	chr12	55957039	55957516	55957039	-	RAMPAGE_only	67	67	1242	39.430291	7.510260	chr12	55957026	55957083	LINE|L2|L2	+	chr12	55955325	55958603	PMEL|ENST00000549404.5	-	55955325,55955463,55955778,55956102,55956948,55957185,55957922,55958472	55955382,55955669,55955863,55956219,55957059,55957671,55958084,55958603	0.595008
SK_MEL_5_cytosolic_fraction	chr6	152717584	152717585	152717584	+	RAMPAGE_only	13	13	17	0.539706	3.219528	chr6	152717403	152717757	LTR|ERVL-MaLR|THE1B	+	chr6	152697960	152724501	MYCT1|ENST00000532295.1	+	152697960,152721741,152722762	152698098,152722253,152724501	0.941176
SK_MEL_5_cytosolic_fraction	chr1	1655448	1655449	1655448	-	RAMPAGE_only	5	6	8	0.253979	2.750000	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.500000
SK_MEL_5_cytosolic_fraction	chr4_GL000008v2_random	170331	170368	170367	-	RAMPAGE_only	63	69	366	11.619554	6.491111	chr4_GL000008v2_random	170280	170685	LTR|ERV1|MER61C	+	chr4_GL000008v2_random	161986	178171	ANKRD20A12P|NR_046228.1	-	161986,163784,164602,175824,177526	162439,163998,164884,175974,178171	0.825137
SK_MEL_5_cytosolic_fraction	chr4	149943059	149943062	149943061	+	RAMPAGE_only	12	20	27	0.857180	3.958229	chr4	149942429	149943268	LTR|ERVL|MER21C	+	chr4	149956207	149958572	AC105343.1|ENST00000505586.1	+	149956207,149958280	149956273,149958572	0.888889
SK_MEL_5_cytosolic_fraction	chr2	144925083	144925140	144925083	+	RAMPAGE_only	82	82	478	15.175265	7.233442	chr2	144924876	144925277	LTR|ERVL-MaLR|MLT1F2	+	chr2	145023227	145073146	TEX41|ENST00000596278.5	+	145023227,145072523	145023273,145073146	0.594142
SK_MEL_5_cytosolic_fraction	chr15	30624337	30624363	30624357	+	High_confidence	3	3	13	0.412716	2.751629	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.923077
SK_MEL_5_cytosolic_fraction	chrX	115022921	115022938	115022921	-	RAMPAGE_only	8	11	34	1.079412	4.801970	chrX	115022863	115023093	SINE|MIR|MIRb	-	chrX	115003976	115019977	MSTRG.30676.2	-	115003976,115007931,115009520,115010643,115013768,115014420,115015669,115017175,115017552,115019849	115005315,115008076,115009666,115010828,115013889,115014574,115015821,115017302,115017695,115019977	0.970588
SK_MEL_5_cytosolic_fraction	chr7	14184766	14184780	14184766	-	RAMPAGE_only	3	4	13	0.412716	3.084963	chr7	14183791	14184793	LINE|L1|L1PB1	+	chr7	14145048	14841450	DGKB|NM_004080.2	-	14145048,14176838,14178030,14338514,14345300,14478160,14574211,14580861,14583051,14607433,14613339,14621377,14630235,14672928,14682552,14682752,14685244,14694074,14698094,14701680,14718541,14736040,14753927,14757654,14841193	14149238,14176899,14178151,14338710,14345391,14478225,14574372,14580951,14583137,14607508,14613413,14621494,14630271,14673027,14682669,14682841,14685362,14694194,14698169,14701730,14718685,14736194,14753948,14757731,14841450	0.923077
SK_MEL_5_cytosolic_fraction	chr22	26627215	26627221	26627220	+	RAMPAGE_only	4	4	10	0.317474	3.121928	chr22	26627111	26627250	SINE|MIR|MIRb	-	chr22	26621982	26630641	CRYBA4|ENST00000466315.1	+	26621982,26622584,26625480,26628287,26630339	26621986,26622635,26625622,26628430,26630641	0.800000
SK_MEL_5_cytosolic_fraction	chr2	71417037	71417046	71417037	+	RAMPAGE_only	4	4	12	0.380969	3.277613	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.833333
SK_MEL_5_cytosolic_fraction	chr5	151687244	151687251	151687250	-	High_confidence	5	7	13	0.412716	3.334679	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
SK_MEL_5_cytosolic_fraction	chr12	129109673	129109674	129109673	+	High_confidence	902	961	1100	34.922158	5.664896	chr12	129109479	129109833	LTR|ERVL-MaLR|THE1A	+	chr12	129109689	129113298	LOC283352|NR_104172.1	+	129109689,129110992,129111419,129113064	129109757,129111139,129111515,129113298	0.905455
SK_MEL_5_cytosolic_fraction	chr5	32403105	32403236	32403105	-	RAMPAGE_only	13	13	98	3.111247	5.366882	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.979592
SK_MEL_5_cytosolic_fraction	chr8	80122425	80122426	80122425	-	RAMPAGE_only	8	9	9	0.285727	3.000000	chr8	80122228	80122808	LTR|ERV1|MER51D	+	chr8	80034867	80080831	TPD52|NM_001025252.2	-	80034867,80042619,80051526,80053281,80064477,80080314	80038235,80042668,80051628,80053430,80064593,80080831	0.777778
SK_MEL_5_cytosolic_fraction	chr13	55053817	55053820	55053819	+	High_confidence	6	10	13	0.412716	3.251629	chr13	55053630	55054427	LTR|ERV1|LTR17	+	chr13	55054015	55179063	MSTRG.7789.1	+	55054015,55062871,55106769,55160956,55179003	55054458,55063002,55106836,55161132,55179063	0.769231
SK_MEL_5_cytosolic_fraction	chr3	125334959	125334977	125334976	-	RAMPAGE_only	3	3	9	0.285727	3.000000	chr3	125334807	125335259	LINE|L2|L2a	+	chr3	125232075	125375249	ZNF148|ENST00000484491.5	-	125232075,125234210,125277725,125279123,125288102,125313307,125323387,125331157,125375101	125233939,125234329,125277809,125279247,125288228,125313656,125323444,125331238,125375249	0.666667
SK_MEL_5_cytosolic_fraction	chr2	78541673	78541676	78541673	-	High_confidence	3	3	8	0.253979	2.521641	chr2	78541256	78543178	LINE|L1|L1PBa1	+	chr2	78409445	78542066	MSTRG.16699.5	-	78409445,78456531,78485793,78541571	78413176,78456731,78485852,78542066	0.500000
SK_MEL_5_cytosolic_fraction	chr12	123272331	123272335	123272334	-	High_confidence	6	6	13	0.412716	3.418296	chr12	123272292	123272359	DNA|hAT-Charlie|Charlie4z	-	chr12	123261275	123272334	CDK2AP1|ENST00000544658.5	-	123261275,123265195,123267184,123272156	123261803,123265322,123267282,123272334	0.615385
SK_MEL_5_cytosolic_fraction	chr8	57978399	57978441	57978421	+	High_confidence	66	69	119	3.777943	4.540864	chr8	57978204	57978556	LTR|ERVL-MaLR|THE1A	+	chr8	57978357	57984126	LINC01602|ENST00000522992.1	+	57978357,57980893,57982265	57978484,57981014,57984126	0.974790
SK_MEL_5_cytosolic_fraction	chr3	9986881	9986944	9986898	+	High_confidence	10	11	48	1.523876	4.841615	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.625000
SK_MEL_5_cytosolic_fraction	chr15	51936194	51936203	51936194	-	RAMPAGE_only	4	6	13	0.412716	3.084963	chr15	51935784	51936413	LTR|ERVL|LTR50	-	chr15	51919072	51930627	AC090971.3|ENST00000557871.1	-	51919072,51921783,51922721,51924039,51925745,51926780,51928206,51929333,51930530	51919145,51921873,51922908,51924177,51925881,51926870,51928291,51929478,51930627	0.769231
SK_MEL_5_cytosolic_fraction	chr14	102235451	102235481	102235458	-	High_confidence	285	297	1107	35.144390	7.049393	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.753388
SK_MEL_5_cytosolic_fraction	chr19	48270142	48270143	48270142	+	High_confidence	5	6	7	0.222232	2.584963	chr19	48270187	48270421	SINE|Alu|AluJr	+	chr19	48270101	48287608	ZNF114|ENST00000595607.5	+	48270101,48271244,48271726,48279730,48282370,48285760	48270219,48271449,48271828,48279808,48282497,48287608	0.714286
SK_MEL_5_cytosolic_fraction	chr20	25296841	25296888	25296887	+	RAMPAGE_only	3	3	21	0.666696	3.681881	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	0.904762
SK_MEL_5_cytosolic_fraction	chr13	60409947	60409968	60409956	+	High_confidence	10	11	36	1.142907	4.675698	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60409970	60573872	MSTRG.7800.8	+	60409970,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573612	60410164,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573872	0.888889
SK_MEL_5_cytosolic_fraction	chr7	26346422	26346429	26346422	+	RAMPAGE_only	7	7	18	0.571453	3.169249	chr7	26346432	26346464	DNA|hAT-Ac|OldhAT1	+	chr7	26354056	26372608	SNX10|ENST00000409367.5	+	26354056,26360974,26364534,26365046,26371820,26372490	26354184,26361061,26364635,26365145,26372033,26372608	0.888889
SK_MEL_5_cytosolic_fraction	chr16	10671789	10671790	10671789	-	High_confidence	19	24	26	0.825433	4.418296	chr16	10671622	10671991	LTR|ERVL-MaLR|THE1B	-	chr16	10627500	10671778	TEKT5|ENST00000574923.1	-	10627500,10635763,10671709	10627799,10635918,10671778	0.846154
SK_MEL_5_cytosolic_fraction	chr7	47992160	47992215	47992214	-	RAMPAGE_only	9	11	42	1.333391	4.963746	chr7	47992098	47992580	LINE|L1|HAL1	+	chr7	47987147	47988963	SUN3|ENST00000461953.5	-	47987147,47988787	47987449,47988963	0.880952
SK_MEL_5_cytosolic_fraction	chr12	6493553	6493591	6493553	-	High_confidence	4	5	20	0.634948	4.037401	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	0.950000
SK_MEL_5_cytosolic_fraction	chr1	148279240	148279274	148279251	+	High_confidence	88	88	437	13.873621	6.687957	chr1	148279033	148279814	LINE|L1|L1MEc	+	chr1	148279231	148294850	MSTRG.1721.2	+	148279231,148287689,148292179,148294775	148279544,148289311,148292323,148294850	0.958810
SK_MEL_5_cytosolic_fraction	chr12	8681676	8681677	8681676	+	High_confidence	10	10	13	0.412716	3.418296	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.923077
SK_MEL_5_cytosolic_fraction	chr13	24580612	24580623	24580622	+	High_confidence	14	14	31	0.984170	4.615061	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.967742
SK_MEL_5_cytosolic_fraction	chr12	9399216	9399217	9399216	-	RAMPAGE_only	9	9	13	0.412716	3.546594	chr12	9398769	9399468	LINE|L1|L1MA9	+	chr12	9397056	9401864	MSTRG.5913.5	-	9397056,9397614,9398381,9399794,9400235,9401746	9397214,9397689,9398442,9400015,9400326,9401864	0.769231
SK_MEL_5_cytosolic_fraction	chr3	155452289	155452342	155452292	-	RAMPAGE_only	26	27	73	2.317561	4.207331	chr3	155452061	155452414	LTR|ERVL-MaLR|THE1A	-	chr3	155375579	155676416	PLCH1|ENST00000494598.5	-	155375579,155485355,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155375789,155485710,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676416	0.890411
SK_MEL_5_cytosolic_fraction	chr5	94732718	94732719	94732718	+	RAMPAGE_only	12	12	12	0.380969	3.084963	chr5	94732537	94732916	LTR|ERVL-MaLR|MLT1A0	+	chr5	94692185	94739436	SLF1|ENST00000493934.1	+	94692185,94708224,94739163	94692256,94708289,94739436	0.583333
SK_MEL_5_cytosolic_fraction	chr8	102925026	102925070	102925069	+	RAMPAGE_only	7	10	50	1.587371	4.686641	chr8	102925075	102925163	DNA|hAT-Charlie|MER5B	+	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.680000
SK_MEL_5_cytosolic_fraction	chr15	74490271	74490290	74490279	-	High_confidence	3	4	12	0.380969	2.845351	chr15	74490025	74490757	LINE|L2|L2a	+	chr15	74478069	74490286	AC012435.1|ENST00000563287.1	-	74478069,74490235	74481403,74490286	0.916667
SK_MEL_5_cytosolic_fraction	chr15	55270907	55270933	55270921	-	High_confidence	377	459	1651	52.414985	5.801462	chr15	55270754	55271222	LINE|L2|L2	+	chr15	55202965	55270909	RAB27A|NM_183236.2	-	55202965,55223888,55228608,55230400,55234781,55270164,55270858	55205705,55224012,55228712,55230486,55234956,55270284,55270909	0.979406
SK_MEL_5_cytosolic_fraction	chr7	118185414	118185434	118185433	+	RAMPAGE_only	9	9	36	1.142907	4.343289	chr7	118185243	118185494	SINE|Alu|AluJo	-	chr7	118184166	118188405	LSM8|ENST00000411938.1	+	118184166,118185646,118188277	118184280,118185694,118188405	0.777778
SK_MEL_5_cytosolic_fraction	chr5	149509878	149509907	149509878	-	RAMPAGE_only	5	5	15	0.476211	3.521641	chr5	149509722	149509839	SINE|Alu|AluJb	-	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.933333
SK_MEL_5_cytosolic_fraction	chr2	86200848	86200875	86200874	+	RAMPAGE_only	6	6	14	0.444464	3.546594	chr2	86200679	86200965	SINE|Alu|AluSp	-	chr2	86199462	86213738	MRPL35|ENST00000409180.1	+	86199462,86206105,86207182,86210479,86213627	86199533,86206295,86207327,86210613,86213738	0.785714
SK_MEL_5_cytosolic_fraction	chrX	87728511	87728552	87728511	-	High_confidence	10	10	60	1.904845	4.673988	chrX	87727773	87728475	LTR|ERV1|MER61-int	-	chrX	87723947	87728686	MSTRG.30529.1	-	87723947,87728443	87724212,87728686	0.866667
SK_MEL_5_cytosolic_fraction	chr4	184768320	184768329	184768328	-	RAMPAGE_only	5	5	11	0.349222	2.646439	chr4	184768056	184768306	SINE|MIR|MIRc	-	chr4	184755600	184766702	ACSL1|ENST00000503407.5	-	184755600,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621	184757265,184757706,184757920,184760500,184762493,184763255,184764925,184765986,184766702	0.818182
SK_MEL_5_cytosolic_fraction	chr6	134534603	134534604	134534603	-	High_confidence	7	7	7	0.222232	2.807355	chr6	134533083	134535527	LTR|ERVL|ERVL-E-int	+	chr6	134525313	134534669	AL078590.3|ENST00000607531.5	-	134525313,134530837,134532033,134534438	134525543,134531064,134532095,134534669	0.857143
SK_MEL_5_cytosolic_fraction	chr19	48270887	48270920	48270914	+	High_confidence	4	7	20	0.634948	3.784184	chr19	48270796	48271084	SINE|Alu|AluYc	+	chr19	48271055	48287070	ZNF114|ENST00000600687.5	+	48271055,48271286,48279730,48282370,48285760	48271119,48271449,48279808,48282497,48287070	0.750000
SK_MEL_5_cytosolic_fraction	chr17	43124971	43124972	43124971	-	High_confidence	47	50	54	1.714360	4.536414	chr17	43124781	43124980	SINE|Alu|AluSx	-	chr17	43094111	43125300	BRCA1|ENST00000492859.5	-	43094111,43095845,43097243,43099774,43104121,43104867,43106455,43110464,43115725,43124016,43125270	43094860,43095922,43097289,43099880,43104261,43104956,43106533,43110580,43115779,43124115,43125300	0.925926
SK_MEL_5_cytosolic_fraction	chr18	9117586	9117618	9117605	+	RAMPAGE_only	2	2	8	0.253979	2.807355	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	0.875000
SK_MEL_5_cytosolic_fraction	chr13	42424879	42424880	42424879	+	RAMPAGE_only	7	8	11	0.349222	3.459432	chr13	42424880	42430912	LINE|L1|L1PA2	+	chr13	42339187	42444144	LINC02341|ENST00000637462.1	+	42339187,42342480,42384256,42394331,42411895,42435199,42437317,42443966	42339294,42342602,42384466,42394603,42412052,42435293,42437472,42444144	0.818182
SK_MEL_5_cytosolic_fraction	chr18	7946878	7946898	7946878	+	High_confidence	62	63	162	5.143081	5.690290	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8296455	MSTRG.13823.5	+	7946869,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8143646,8244057,8247844,8248149,8296367	7946977,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8143779,8244209,8247919,8248176,8296455	0.993827
SK_MEL_5_cytosolic_fraction	chr3	15341379	15341383	15341379	-	High_confidence	43	55	94	2.984257	6.105688	chr3	15341159	15341407	LINE|L2|L2a	+	chr3	15255649	15341368	SH3BP5|ENST00000408919.7	-	15255649,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341368	0.914894
SK_MEL_5_cytosolic_fraction	chr3	69999732	69999733	69999732	+	High_confidence	1044	1096	1169	37.112730	7.940404	chr3	69999500	70000000	LTR|ERV1|LTR1A2	+	chr3	69999732	70014787	SAMMSON|ENST00000641286.1	+	69999732,70012356,70013519	69999867,70012598,70014787	0.563730
SK_MEL_5_cytosolic_fraction	chr15	80059915	80059933	80059918	+	High_confidence	379	446	989	31.398195	5.500674	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.987867
SK_MEL_5_cytosolic_fraction	chrX	2502817	2502869	2502817	-	High_confidence	4	7	35	1.111160	4.741364	chrX	2502799	2503215	LTR|ERV1|MER41D	+	chrX	2486981	2502805	MSTRG.29985.12	-	2486981,2488787,2502760	2487702,2490772,2502805	0.542857
SK_MEL_5_cytosolic_fraction	chr8	107336500	107336581	107336500	-	High_confidence	253	289	1512	48.002094	5.002668	chr8	107336384	107336688	SINE|Alu|AluY	+	chr8	107249481	107336515	ANGPT1|NM_001314051.1	-	107249481,107264220,107284681,107293935,107303239,107321895,107336149,107336383	107252015,107264351,107284848,107294037,107303367,107322128,107336271,107336515	0.998016
SK_MEL_5_cytosolic_fraction	chr1	155058784	155058785	155058784	+	High_confidence	4	4	7	0.222232	2.584963	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.857143
SK_MEL_5_cytosolic_fraction	chr7	21851154	21851198	21851197	+	High_confidence	5	5	22	0.698443	3.884184	chr7	21851065	21851438	LTR|ERVL-MaLR|THE1C	+	chr7	21851161	21861970	DNAH11|ENST00000607413.5	+	21851161,21852466,21854314,21861852	21851320,21852631,21854455,21861970	0.909091
SK_MEL_5_cytosolic_fraction	chr22	29545143	29545144	29545143	-	High_confidence	12	12	16	0.507959	2.739572	chr22	29544984	29545330	LTR|ERVL-MaLR|THE1A	-	chr22	29539337	29545144	THOC5|ENST00000455450.5	-	29539337,29542858,29543428,29544459,29545060	29539476,29542956,29543542,29544603,29545144	0.937500
SK_MEL_5_cytosolic_fraction	chr7	99358774	99358775	99358774	+	High_confidence	12	13	13	0.412716	3.188722	chr7	99358536	99358830	SINE|Alu|AluSp	-	chr7	99358665	99366214	ARPC1A|ENST00000463009.1	+	99358665,99359544,99363542,99365890	99358775,99359738,99363633,99366214	0.923077
SK_MEL_5_cytosolic_fraction	chr16	35516862	35517013	35516915	+	High_confidence	63	80	312	9.905194	6.406067	chr16	35516603	35517040	LTR|ERVK|LTR3B_	+	chr16	35516860	35524881	MSTRG.11134.1	+	35516860,35522118	35517144,35524881	0.935897
SK_MEL_5_cytosolic_fraction	chrX	87728664	87728691	87728690	-	High_confidence	91	99	426	13.524399	5.191940	chrX	87728475	87728831	LTR|ERV1|MER61A	-	chrX	87723947	87728686	MSTRG.30529.1	-	87723947,87728443	87724212,87728686	0.960094
SK_MEL_5_cytosolic_fraction	chr6	89654453	89654492	89654491	-	RAMPAGE_only	30	43	197	6.254241	5.844716	chr6	89654446	89654582	SINE|MIR|MIRc	+	chr6	89642780	89703788	MSTRG.25367.3	-	89642780,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89703752	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89703788	0.994924
SK_MEL_5_cytosolic_fraction	chr2	37200801	37200803	37200802	+	RAMPAGE_only	12	22	22	0.698443	3.481715	chr2	37200552	37200890	SINE|Alu|AluJo	+	chr2	37231630	37249160	NDUFAF7|NM_144736.4	+	37231630,37232105,37236095,37237756,37241577,37242634,37243862,37246051,37247455,37248134	37231760,37232266,37236176,37237867,37241791,37242693,37243973,37246195,37247629,37249160	1.000000
SK_MEL_5_cytosolic_fraction	chr1	19344390	19344429	19344390	-	RAMPAGE_only	3	4	11	0.349222	2.845351	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
SK_MEL_5_cytosolic_fraction	chr4	65241803	65241816	65241815	-	High_confidence	6	7	19	0.603201	3.794653	chr4	65241173	65242746	LTR|ERV1|MER52A	-	chr4	65225866	65241814	AC018683.1|ENST00000649562.1	-	65225866,65238383,65241181	65226010,65238464,65241814	0.736842
SK_MEL_5_cytosolic_fraction	chr9	5894689	5894709	5894691	+	RAMPAGE_only	60	75	161	5.111334	4.967759	chr9	5894274	5894902	LTR|ERVL|LTR50	-	chr9	5890921	5908945	MLANA|ENST00000381471.1	+	5890921,5892449,5897556,5906884,5908639	5891302,5892551,5897653,5906998,5908945	0.975155
SK_MEL_5_cytosolic_fraction	chr5	81407938	81407939	81407938	-	High_confidence	132	138	182	5.778030	6.651285	chr5	81407775	81408135	LTR|ERVL-MaLR|THE1D	-	chr5	81330361	81407928	MSTRG.23528.2	-	81330361,81330813,81332476,81335767,81342671,81343817,81344159,81344890,81345884,81347773,81359902,81363787,81371749,81385756,81407857	81330543,81330940,81332605,81335901,81342755,81343881,81344215,81345041,81346004,81347930,81360038,81363889,81371810,81385826,81407928	0.549451
SK_MEL_5_cytosolic_fraction	chr11	61615045	61615046	61615045	+	High_confidence	18	19	23	0.730191	4.142915	chr11	61614843	61615211	LTR|ERVL-MaLR|THE1B	+	chr11	61615036	61636241	RPLP0P2|ENST00000478959.1	+	61615036,61624984,61628841,61636101	61615128,61625127,61629039,61636241	0.565217
SK_MEL_5_cytosolic_fraction	chr16	11640246	11640319	11640246	-	RAMPAGE_only	3	3	30	0.952422	3.892725	chr16	11640197	11640395	SINE|MIR|MIR3	-	chr16	11549612	11629210	LITAF|ENST00000576036.5	-	11549612,11553532,11556510,11629122	11549745,11553689,11556735,11629210	0.700000
SK_MEL_5_cytosolic_fraction	chr7	7157347	7157382	7157370	+	RAMPAGE_only	24	28	96	3.047752	5.853412	chr7	7157366	7157507	LINE|L1|L1M8	-	chr7	7182614	7248647	C1GALT1|ENST00000436587.6	+	7182614,7234302,7238254,7243523	7182820,7234539,7238922,7248647	0.645833
SK_MEL_5_cytosolic_fraction	chr12	110172428	110172512	110172511	+	High_confidence	10	10	46	1.460381	4.802530	chr12	110172360	110173979	Retroposon|SVA|SVA_D	+	chr12	110171901	110218775	MSTRG.7046.11	+	110171901,110172575,110180421,110190919,110192616,110203863,110205442,110205594,110209170,110218043	110172086,110173031,110180571,110191048,110192706,110203950,110205514,110205680,110209216,110218775	0.978261
SK_MEL_5_cytosolic_fraction	chr6	68576161	68576193	68576192	-	High_confidence	134	165	594	18.857965	6.834432	chr6	68576052	68576220	DNA|hAT-Charlie|MER1B	+	chr6	68536390	68576202	MSTRG.25220.1	-	68536390,68576044	68537627,68576202	0.747475
SK_MEL_5_cytosolic_fraction	chr19	5680234	5680261	5680234	-	High_confidence	20	23	130	4.127164	5.510400	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.984615
SK_MEL_5_cytosolic_fraction	chr14	55796687	55796688	55796687	-	High_confidence	1047	1190	1473	46.763945	6.639607	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796688	LINC00520|ENST00000649892.1	-	55781136,55793367,55796602	55782581,55793456,55796688	0.821453
SK_MEL_5_cytosolic_fraction	chr2	227805744	227805769	227805765	+	RAMPAGE_only	3	3	10	0.317474	2.921928	chr2	227805690	227806180	LTR|ERV1|LTR2C	-	chr2	227813841	227817564	CCL20|NM_001130046.1	+	227813841,227815456,227816306,227817061	227813987,227815568,227816384,227817564	0.700000
SK_MEL_5_cytosolic_fraction	chr6	114998110	114998158	114998133	+	High_confidence	36	44	126	4.000174	5.603839	chr6	114998054	114998374	LTR|ERV1|LTR12F	+	chr6	114998160	115002279	MSTRG.25530.1	+	114998160,115001589	114998419,115002279	0.952381
SK_MEL_5_cytosolic_fraction	chr3	15341438	15341451	15341450	-	High_confidence	6	6	10	0.317474	3.169925	chr3	15341407	15341757	LTR|ERVL-MaLR|THE1D	+	chr3	15254352	15341394	SH3BP5|NM_001018009.3	-	15254352,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341394	0.600000
SK_MEL_5_cytosolic_fraction	chr12	26914411	26914572	26914571	-	RAMPAGE_only	7	7	78	2.476298	5.022537	chr12	26914520	26914587	LINE|RTE-BovB|MamRTE1	+	chr12	26905180	26917734	INTS13|ENST00000538155.5	-	26905180,26906301,26911177,26913456,26913973,26916001,26917351,26917643	26905536,26906437,26911317,26913687,26914128,26916180,26917441,26917734	1.000000
SK_MEL_5_cytosolic_fraction	chr2	28904530	28904532	28904530	+	High_confidence	2	4	7	0.222232	2.584963	chr2	28904449	28904682	LINE|L1|L1ME4c	-	chr2	28905005	28926485	WDR43|ENST00000296126.6	+	28905005,28906459,28912589,28914068,28917892,28922918,28924981,28926467	28905051,28906581,28912710,28914208,28917995,28922983,28925153,28926485	0.714286
SK_MEL_5_cytosolic_fraction	chr7	30563894	30563901	30563894	-	High_confidence	6	6	23	0.730191	4.011365	chr7	30563654	30564076	LTR|ERVL-MaLR|MLT1C	-	chr7	30548356	30564617	GARS-DT|ENST00000355837.4	-	30548356,30563722	30562128,30564617	0.782609
SK_MEL_5_cytosolic_fraction	chr2	233929905	233929907	233929905	+	High_confidence	3	7	9	0.285727	3.000000	chr2	233929803	233930103	LINE|L1|L1ME3D	-	chr2	233929715	234019581	MSTRG.17992.4	+	233929715,233930667,233937352,233938997,233942575,233945855,233947087,233949948,233953916,233955131,233960775,233963281,233964627,233966609,233969694,233970209,233980187,233981773,233983052,233985687,233996325,234006852,234008069,234014561,234017298	233929750,233930741,233937509,233939175,233942748,233946030,233947155,233950146,233954019,233955250,233961066,233963377,233964757,233966755,233969807,233970426,233980279,233981915,233983224,233985865,233996516,234006952,234008103,234014654,234019581	0.555556
SK_MEL_5_cytosolic_fraction	chr13	113187286	113187445	113187336	-	High_confidence	45	53	304	9.651215	5.829787	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113177616	113187399	MSTRG.8044.10	-	113177616,113178173,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178008,113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.953947
SK_MEL_5_cytosolic_fraction	chr11	1598964	1599017	1598987	-	High_confidence	6	6	30	0.952422	4.215061	chr11	1598729	1599080	LTR|ERVL-MaLR|MSTB	-	chr11	1597176	1598294	KRTAP5-2|NM_001004325.1	-	1597176	1598294	1.000000
SK_MEL_5_cytosolic_fraction	chr16	81181319	81181331	81181319	-	High_confidence	2	2	7	0.222232	2.584963	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81100888	81181324	PKD1L2|ENST00000533478.5	-	81100888,81108561,81109193,81112162,81117370,81121585,81123650,81127760,81130458,81133562,81137436,81139507,81141296,81147297,81148139,81149689,81151766,81153960,81154236,81156858,81159623,81160682,81163599,81164643,81165838,81167918,81170942,81174719,81175604,81177806,81179644,81181150	81101284,81108693,81109295,81112373,81117531,81121713,81123784,81128066,81130644,81133700,81137533,81139712,81141525,81147514,81148357,81149889,81151913,81154139,81154338,81157089,81159817,81160905,81163731,81164770,81165963,81168101,81171074,81174914,81175750,81177983,81179786,81181324	0.714286
SK_MEL_5_cytosolic_fraction	chr10	4268673	4268700	4268699	-	High_confidence	5	5	16	0.507959	3.773557	chr10	4268457	4268809	LTR|ERVL-MaLR|THE1A	-	chr10	4251420	4268684	MSTRG.2992.1	-	4251420,4268532	4254896,4268684	0.687500
SK_MEL_5_cytosolic_fraction	chr10	49583326	49583327	49583326	-	RAMPAGE_only	27	28	31	0.984170	4.825164	chr10	49583154	49583510	LTR|ERVL-MaLR|THE1D	-	chr10	49515104	49539538	ERCC6|NM_001277059.1	-	49515104,49524032,49528416,49530719,49532542,49539431	49517121,49524777,49528525,49530840,49532978,49539538	0.612903
SK_MEL_5_cytosolic_fraction	chrX	115209389	115209400	115209389	+	High_confidence	3	4	9	0.285727	2.503258	chrX	115209252	115209596	LTR|ERVL-MaLR|THE1B	+	chrX	115209442	115307485	MSTRG.30682.1	+	115209442,115301991,115303299,115306204	115209513,115302123,115303418,115307485	0.666667
SK_MEL_5_cytosolic_fraction	chr6	105370451	105370452	105370451	-	RAMPAGE_only	9	9	14	0.444464	3.238901	chr6	105370327	105371212	LINE|L1|L1MC1	+	chr6	105277564	105403084	PREP|ENST00000369110.7	-	105277564,105281745,105282450,105285485,105288757,105323664,105328828,105333313,105352971,105368902,105373368,105376124,105377385,105397852,105402846	105278438,105281902,105282582,105285580,105288894,105323768,105329026,105333505,105353077,105369024,105373578,105376255,105377519,105397927,105403084	0.714286
SK_MEL_5_cytosolic_fraction	chr8	28447453	28447489	28447460	+	RAMPAGE_only	7	7	26	0.825433	4.563856	chr8	28447393	28447671	LINE|L1|L1MC5	+	chr8	28448953	28455902	AC025871.1|ENST00000518819.1	+	28448953,28455623	28449106,28455902	0.923077
SK_MEL_5_cytosolic_fraction	chr15	63237351	63237387	63237351	+	RAMPAGE_only	8	9	18	0.571453	3.852169	chr15	63236622	63238155	LINE|L1|L1MA3	-	chr15	63189605	63262776	RAB8B|ENST00000559006.1	+	63189605,63244755,63249644,63255506,63256504,63259626,63262691	63189748,63244816,63249705,63255584,63256594,63259692,63262776	0.500000
SK_MEL_5_cytosolic_fraction	chr17	42814917	42814948	42814917	-	High_confidence	32	32	51	1.619118	4.836566	chr17	42814830	42815625	LINE|L2|L2b	+	chr17	42810309	42814673	BECN1|ENST00000588276.5	-	42810309,42814523	42810928,42814673	0.745098
SK_MEL_5_cytosolic_fraction	chr3	142347654	142347690	142347654	-	RAMPAGE_only	3	4	11	0.349222	2.921928	chr3	142347601	142347897	SINE|Alu|AluSz6	-	chr3	142309391	142412655	XRN1|ENST00000498077.6	-	142309391,142312597,142318591,142318789,142329433,142332374,142332966,142335447,142347233,142355400,142356911,142359861,142365046,142365309,142370484,142371238,142375797,142376478,142380081,142383299,142384522,142397328,142400443,142403673,142403868,142404906,142412543	142311813,142312758,142318694,142318903,142329615,142332534,142333089,142335509,142347342,142355496,142357119,142359931,142365179,142365366,142370620,142371328,142375944,142376594,142380180,142383413,142384685,142397460,142400547,142403772,142403989,142405073,142412655	0.818182
SK_MEL_5_cytosolic_fraction	chr5	102957548	102957568	102957567	+	RAMPAGE_only	4	4	9	0.285727	2.725481	chr5	102957517	102957826	SINE|Alu|AluSg4	-	chr5	102949576	103029594	PAM|ENST00000379799.7	+	102949576,102949901,102950716,102959874,102961157,102974115,102990271,103003032,103005153,103006800,103007456,103009750,103017333,103019789,103028181,103028886	102949617,102949978,102950820,102960059,102961229,102974436,102990401,103003149,103005226,103007011,103007657,103009866,103017433,103019843,103028238,103029594	0.666667
SK_MEL_5_cytosolic_fraction	chr7	104752733	104752807	104752806	-	RAMPAGE_only	4	7	29	0.920675	4.237291	chr7	104748901	104752819	LTR|ERVK|HERVK-int	-	chr7	104738596	104757748	LHFPL3-AS1|ENST00000433514.5	-	104738596,104744049,104752714,104757608	104738984,104744180,104752803,104757748	0.931034
SK_MEL_5_cytosolic_fraction	chr6	79631242	79631303	79631273	+	High_confidence	15	15	101	3.206489	5.320034	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.970297
SK_MEL_5_cytosolic_fraction	chr3	171776107	171776193	171776117	+	High_confidence	90	92	190	6.032009	6.441007	chr3	171776041	171776135	SINE|MIR|MIRc	-	chr3	171776126	171800553	MSTRG.21401.1	+	171776126,171800229	171776384,171800553	0.652632
SK_MEL_5_cytosolic_fraction	chr1	185834457	185834498	185834461	-	High_confidence	60	110	250	7.936854	6.186291	chr1	185834183	185834763	LTR|ERVL-MaLR|MLT1F2	-	chr1	185823898	185834573	MSTRG.2366.1	-	185823898,185834403	185830719,185834573	0.960000
SK_MEL_5_cytosolic_fraction	chr2	124407868	124407869	124407868	+	RAMPAGE_only	5	5	7	0.222232	2.584963	chr2	124407870	124413893	LINE|L1|L1PA2	+	chr2	124025286	124915377	CNTNAP5|NM_130773.3	+	124025286,124221704,124242199,124417442,124434483,124446752,124474738,124504291,124524302,124527284,124563216,124609800,124647757,124747228,124763671,124763976,124772798,124789901,124798095,124865305,124869674,124902881,124911466,124914091	124025732,124221809,124242393,124417590,124434687,124446937,124474879,124504556,124524452,124527456,124563323,124609920,124647958,124747385,124763799,124764147,124773017,124790141,124798320,124865436,124869762,124903100,124911538,124915377	0.714286
SK_MEL_5_cytosolic_fraction	chr14	92813512	92813532	92813531	+	RAMPAGE_only	15	15	34	1.079412	4.657882	chr14	92813216	92814485	LINE|L2|L2c	-	chr14	92794245	92839796	MSTRG.8908.2	+	92794245,92797407,92806735,92809299,92810253,92811550,92816250,92819707,92824545,92833181,92835558,92837385,92839365	92794456,92797981,92806963,92809519,92810377,92811754,92816421,92819836,92824644,92833347,92835664,92837449,92839796	0.911765
SK_MEL_5_cytosolic_fraction	chr13	27578525	27578526	27578525	-	RAMPAGE_only	7	8	10	0.317474	3.121928	chr13	27578466	27578967	LTR|ERVL-MaLR|MLT1G	+	chr13	27545924	27608013	LNX2|ENST00000649248.1	-	27545924,27550332,27553207,27556235,27559841,27562412,27567639,27569028,27581296,27606729,27607990	27548470,27550491,27553439,27556413,27559985,27562781,27567839,27569276,27581803,27606771,27608013	0.900000
SK_MEL_5_cytosolic_fraction	chr7	103225844	103225863	103225847	-	RAMPAGE_only	4	4	22	0.698443	3.821928	chr7	103225820	103226186	LTR|ERVL-MaLR|MLT1A0	+	chr7	103175132	103280219	DPY19L2P2|ENST00000439473.5	-	103175132,103184001,103185437,103195439,103197186,103198594,103210266,103212160,103214000,103216462,103225104,103233799,103234648,103237755,103238802,103240561,103242988,103254781,103257603,103271731,103274069,103277613,103279832	103175411,103184127,103185537,103195614,103197306,103198619,103210313,103212232,103214102,103216543,103225164,103233886,103234726,103237855,103238871,103240653,103243046,103254875,103257724,103271869,103275627,103277638,103280219	0.818182
SK_MEL_5_cytosolic_fraction	chr6	9766816	9766826	9766816	-	RAMPAGE_only	7	7	13	0.412716	3.584963	chr6	9766518	9766897	LTR|ERVL-MaLR|THE1C	-	chr6	9596289	9939328	OFCC1|ENST00000492094.6	-	9596289,9598732,9610620,9673034,9697633,9705189,9707756,9768930,9775806,9809576,9819161,9840236,9842515,9845516,9900325,9908517,9932769,9933241,9939288	9596324,9598879,9610826,9673194,9697797,9705442,9707972,9769055,9775889,9809790,9819424,9840514,9842636,9845593,9900489,9908604,9932946,9933308,9939328	0.615385
SK_MEL_5_cytosolic_fraction	chr18	46087018	46087066	46087042	-	High_confidence	5	5	17	0.539706	3.690117	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.823529
SK_MEL_5_cytosolic_fraction	chr16	885587	885591	885590	-	RAMPAGE_only	5	5	10	0.317474	2.921928	chr16	884862	886073	LINE|L1|L1MEc	+	chr16	854499	873860	LMF1|ENST00000569516.5	-	854499,868943,869882,870728,871160	854706,869056,870066,870882,873860	0.700000
SK_MEL_5_cytosolic_fraction	chr2	151704888	151704889	151704888	-	RAMPAGE_only	14	14	14	0.444464	3.521641	chr2	151698868	151704889	LINE|L1|L1PA2	-	chr2	151689197	151706931	NEB|ENST00000489048.1	-	151689197,151691863,151692058,151692260,151694322,151694521,151695577,151696636,151697147,151697349,151697543,151706880	151690825,151691968,151692166,151692362,151694436,151694629,151695682,151696735,151697252,151697457,151697648,151706931	0.928571
SK_MEL_5_cytosolic_fraction	chr14	61401818	61401868	61401867	+	RAMPAGE_only	13	13	63	2.000087	5.348610	chr14	61401421	61402514	DNA|hAT-Charlie|Charlie1a	+	chr14	61390693	61457557	PRKCH|ENST00000557585.5	+	61390693,61391224,61443110,61445691,61449163,61450841,61453225,61457175,61457505	61390838,61391288,61443261,61445726,61449252,61450971,61453353,61457319,61457557	0.873016
SK_MEL_5_cytosolic_fraction	chr2	29223820	29223867	29223866	-	High_confidence	6	10	25	0.793685	3.559080	chr2	29223782	29224196	LTR|ERVL|LTR16B2	-	chr2	29192773	29223900	ALK|ENST00000642122.1	-	29192773,29196769,29197541,29207170,29209785,29213983,29220705,29222343,29222516,29223341	29193922,29196860,29197676,29207272,29209878,29214081,29220835,29222408,29222607,29223900	1.000000
SK_MEL_5_cytosolic_fraction	chr4	170743765	170743777	170743776	-	High_confidence	4	4	8	0.253979	2.750000	chr4	170743427	170744142	LTR|ERV1|MER50	-	chr4	170742468	170743735	LOC100506107|NR_134683.1	-	170742468,170743664	170743028,170743735	1.000000
SK_MEL_5_cytosolic_fraction	chr2	131104667	131104672	131104667	+	High_confidence	2	2	8	0.253979	2.521641	chr2	131104659	131105113	LINE|L1|L1MC3	-	chr2	131104846	131149852	PLEKHB2|NM_001267067.1	+	131104846,131120933,131125752,131126683,131140166,131146636	131105398,131120978,131125905,131126786,131140275,131149852	0.875000
SK_MEL_5_cytosolic_fraction	chr2	78541875	78541890	78541889	-	High_confidence	193	198	642	20.381841	7.921453	chr2	78541256	78543178	LINE|L1|L1PBa1	+	chr2	78409445	78542066	MSTRG.16699.5	-	78409445,78456531,78485793,78541571	78413176,78456731,78485852,78542066	0.649533
SK_MEL_5_cytosolic_fraction	chr22	37849317	37849333	37849317	-	High_confidence	171	191	566	17.969038	5.912257	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37833008	37849318	MSTRG.19622.11	-	37833008,37833158,37833683,37838499,37840186,37848228	37833082,37833206,37833755,37838598,37840234,37849318	0.985866
SK_MEL_5_cytosolic_fraction	chr16	30624009	30624019	30624018	-	High_confidence	13	13	29	0.920675	4.521641	chr16	30623844	30624281	LTR|ERVK|LTR3B_	-	chr16	30604617	30624012	ZNF689|ENST00000566673.5	-	30604617,30609524,30610587,30623739	30605447,30609638,30610782,30624012	0.758621
SK_MEL_5_cytosolic_fraction	chr2	84563065	84563066	84563065	+	High_confidence	213	230	302	9.587720	6.394743	chr2	84562873	84563235	LTR|ERVL-MaLR|THE1B	+	chr2	84563077	84819578	MSTRG.16727.6	+	84563077,84573466,84577256,84579526,84583998,84588825,84593971,84595645,84604338,84605499,84606975,84611673,84616885,84619684,84621190,84621437,84624264,84624464,84624901,84634503,84637209,84640429,84641946,84653318,84654659,84658291,84659025,84669288,84670327,84672326,84677004,84681356,84685325,84686483,84688438,84694248,84697574,84699593,84701096,84703394,84704066,84705485,84706895,84707519,84709342,84710286,84713094,84715559,84718203,84722624,84727668,84733443,84745079,84762754,84781492,84784721,84785609,84787163,84796305,84797536,84805664,84808414,84812340,84813057,84813970,84815860,84819304	84563151,84573587,84577408,84579679,84584250,84588954,84594085,84595789,84604551,84605592,84607095,84611854,84616982,84619904,84621355,84621551,84624390,84624620,84625063,84634641,84637377,84640578,84642054,84653874,84654782,84658474,84659169,84669510,84670475,84672484,84677136,84681528,84685472,84686557,84688593,84694480,84697727,84699734,84701339,84703562,84704302,84705747,84707019,84707716,84709546,84710412,84713259,84715627,84718384,84722804,84727902,84733579,84745249,84762945,84781653,84784810,84785756,84787302,84796425,84797658,84805794,84808542,84812526,84813130,84814122,84816083,84819578	1.000000
SK_MEL_5_cytosolic_fraction	chr11	61949811	61949846	61949811	+	High_confidence	8	8	33	1.047665	4.043802	chr11	61949804	61949945	SINE|MIR|MIR3	-	chr11	61949820	61964461	BEST1|ENST00000378043.8	+	61949820,61951770,61955106,61955717,61956843,61957386,61958145,61959497,61959891,61962254,61964103	61950427,61951958,61955201,61955951,61956998,61957464,61958298,61959578,61960043,61962893,61964461	0.969697
SK_MEL_5_cytosolic_fraction	chr3	114625006	114625034	114625033	-	High_confidence	11	11	24	0.761938	3.725104	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.791667
SK_MEL_5_cytosolic_fraction	chr21	38121726	38121751	38121750	+	High_confidence	3	3	15	0.476211	3.664498	chr21	38121639	38121787	SINE|Alu|AluSp	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.933333
SK_MEL_5_cytosolic_fraction	chr11	67605637	67605690	67605644	+	High_confidence	4	8	25	0.793685	4.243856	chr11	67605625	67605829	SINE|MIR|MIRc	+	chr11	67605652	67612554	NDUFV1|ENST00000647561.1	+	67605652,67606359,67608395,67608551,67609451,67610380,67610994,67611402,67611896,67612119,67612371	67606044,67607076,67608478,67608722,67609635,67610570,67611207,67611569,67611978,67612265,67612554	1.000000
SK_MEL_5_cytosolic_fraction	chr18	5459066	5459099	5459098	+	RAMPAGE_only	2	2	8	0.253979	3.000000	chr18	5458715	5459149	LINE|RTE-X|L4_A_Mam	+	chr18	5463626	5480975	AP005059.2|ENST00000577527.1	+	5463626,5467411,5479625,5480895	5463834,5467580,5479746,5480975	0.625000
SK_MEL_5_cytosolic_fraction	chr17	51153837	51153859	51153858	+	High_confidence	5	5	13	0.412716	2.918296	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51154043	51155759	NME1|ENST00000456492.1	+	51154043,51155650	51154444,51155759	0.538462
SK_MEL_5_cytosolic_fraction	chr9	77822994	77823013	77822997	-	RAMPAGE_only	21	22	47	1.492129	4.799062	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77716273	78031449	GNAQ|NM_002072.4	-	77716273,77728513,77794462,77797519,77815615,77922160,78031099	77721513,77728667,77794592,77797648,77815770,77922345,78031449	0.936170
SK_MEL_5_cytosolic_fraction	chrX	53585017	53585039	53585038	-	RAMPAGE_only	3	3	10	0.317474	2.641604	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.900000
SK_MEL_5_cytosolic_fraction	chr8	79996511	79996556	79996511	-	RAMPAGE_only	4	5	20	0.634948	3.405822	chr8	79996376	79996682	LTR|ERVL-MaLR|MLT1A0	-	chr8	79918716	80030271	MRPS28|ENST00000276585.8	-	79918716,80002998,80030035	79919148,80003180,80030271	0.800000
SK_MEL_5_cytosolic_fraction	chr7	6257768	6257798	6257790	-	High_confidence	74	76	444	14.095853	5.831463	chr7	6257761	6258020	LTR|ERVL-MaLR|MLT1L	-	chr7	6187063	6257812	MSTRG.26077.11	-	6187063,6187656,6190448,6257735	6187116,6187721,6190531,6257812	0.648649
SK_MEL_5_cytosolic_fraction	chr7	56043149	56043150	56043149	-	RAMPAGE_only	94	97	97	3.079499	4.841809	chr7	56042985	56043279	SINE|Alu|AluSx	+	chr7	56010070	56051288	MSTRG.26510.5	-	56010070,56011439,56015022,56017233,56019599,56021072,56031928,56033960,56051137	56010609,56011869,56015171,56017379,56019734,56021231,56032054,56034154,56051288	0.958763
SK_MEL_5_cytosolic_fraction	chr5	139364659	139364720	139364719	+	RAMPAGE_only	4	4	23	0.730191	4.262692	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.521739
SK_MEL_5_cytosolic_fraction	chr10	86981263	86981264	86981263	+	RAMPAGE_only	24	26	27	0.857180	4.282484	chr10	86981077	86981384	LTR|ERVL-MaLR|THE1C	+	chr10	86970740	87010126	AGAP11|ENST00000433214.2	+	86970740,86983139,86983853,86992246,86993361,86994823,86999448,87000318,87001635,87004324,87007654,87008354	86970915,86983240,86983941,86992469,86993552,86994903,86999591,87000434,87001736,87004360,87007706,87010126	0.740741
SK_MEL_5_cytosolic_fraction	chr3	157381677	157381716	157381677	-	High_confidence	51	52	375	11.905281	6.651503	chr3	157381425	157381750	SINE|Alu|AluSz6	+	chr3	157363691	157381673	VEPH1|ENST00000488772.1	-	157363691,157364302,157381155,157381593	157363761,157364512,157381376,157381673	0.840000
SK_MEL_5_cytosolic_fraction	chr4	75276609	75276610	75276609	-	RAMPAGE_only	8	8	12	0.380969	2.550341	chr4	75270579	75276607	LINE|L1|L1PA2	-	chr4	75269067	75361182	AC025244.1|ENST00000505930.1	-	75269067,75361141	75269495,75361182	0.916667
SK_MEL_5_cytosolic_fraction	chr8	139602117	139602151	139602150	-	High_confidence	3	3	19	0.603201	3.221097	chr8	139601912	139602270	LTR|ERVL-MaLR|MLT1I	-	chr8	139601077	139602064	KCNK9|ENST00000523653.1	-	139601077,139602012	139601601,139602064	0.947368
SK_MEL_5_cytosolic_fraction	chr7	107632795	107632822	107632821	+	RAMPAGE_only	8	8	30	0.952422	4.151479	chr7	107632484	107632871	LTR|ERVL-MaLR|MLT1D	-	chr7	107638284	107717785	MSTRG.27039.1	+	107638284,107661638,107663295,107672137,107674163,107674944,107683201,107683454,107689052,107690123,107694402,107694620,107695932,107698041,107700082,107701100,107701826,107704330,107710053,107712538,107715422	107638598,107661805,107663435,107672248,107674348,107675109,107683354,107683537,107689200,107690237,107694480,107694716,107696039,107698111,107700175,107701196,107702057,107704385,107710199,107712622,107717785	0.666667
SK_MEL_5_cytosolic_fraction	chr14	64453828	64453851	64453850	+	RAMPAGE_only	5	6	17	0.539706	3.572469	chr14	64453898	64454014	SINE|MIR|MIR3	+	chr14	64457996	64460003	MTHFD1|ENST00000554353.1	+	64457996,64459758	64458307,64460003	0.882353
SK_MEL_5_cytosolic_fraction	chr1	202551726	202551744	202551736	+	RAMPAGE_only	15	15	79	2.508046	5.246485	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.658228
SK_MEL_5_cytosolic_fraction	chrX	55269095	55269096	55269095	+	RAMPAGE_only	7	10	11	0.349222	2.921928	chrX	55269095	55270527	LINE|L1|L1PA4	+	chrX	55279838	55288685	AL158819.1|ENST00000514681.4	+	55279838,55281373,55281862,55282719,55288666	55279890,55281465,55281971,55282845,55288685	0.727273
SK_MEL_5_cytosolic_fraction	chr16	14649856	14650098	14650097	+	RAMPAGE_only	20	20	239	7.587633	4.225932	chr16	14650040	14650334	SINE|Alu|AluSz	+	chr16	14632931	14650589	BFAR|ENST00000562442.5	+	14632931,14644273,14648387,14649803	14633018,14644609,14648592,14650589	0.949791
SK_MEL_5_cytosolic_fraction	chr12	110172640	110172800	110172788	+	High_confidence	88	124	568	18.032533	6.365485	chr12	110172360	110173979	Retroposon|SVA|SVA_D	+	chr12	110171901	110218775	MSTRG.7046.11	+	110171901,110172575,110180421,110190919,110192616,110203863,110205442,110205594,110209170,110218043	110172086,110173031,110180571,110191048,110192706,110203950,110205514,110205680,110209216,110218775	1.000000
SK_MEL_5_cytosolic_fraction	chr20	50267474	50267500	50267474	+	High_confidence	381	534	2237	71.018971	5.831626	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.985695
SK_MEL_5_cytosolic_fraction	chr12	122064308	122064376	122064375	+	RAMPAGE_only	149	151	789	25.048712	7.008456	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.854246
SK_MEL_5_cytosolic_fraction	chr4	44016697	44016773	44016700	+	High_confidence	218	287	1106	35.112643	6.457178	chr4	44016424	44016724	LTR|ERV1|MER51A	-	chr4	44016860	44022061	LVCAT1|NR_131959.1	+	44016860,44019750	44017062,44022061	0.952984
SK_MEL_5_cytosolic_fraction	chr9	129488782	129489126	129488856	+	High_confidence	275	279	2385	75.717588	6.375214	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.861216
SK_MEL_5_cytosolic_fraction	chrX	97160141	97160189	97160141	+	RAMPAGE_only	8	11	49	1.555623	4.909830	chrX	97159909	97160444	LTR|ERV1|LTR26	-	chrX	96685016	97469765	DIAPH2|ENST00000373054.5	+	96685016,96735757,96738585,96758153,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348117,97383908,97429649,97469693	96685190,96735790,96738762,96758258,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247841,97348280,97384044,97429745,97469765	0.816327
SK_MEL_5_cytosolic_fraction	chr5	81602420	81602429	81602420	-	RAMPAGE_only	8	8	15	0.476211	3.773557	chr5	81601657	81603037	LTR|ERVL-MaLR|MLT1G-int	-	chr5	81442650	81616473	SSBP2|ENST00000509743.6	-	81442650,81446867,81448789,81461054,81466973,81473699,81474495,81489249,81513627,81615472,81616348	81442723,81446922,81448825,81461103,81467041,81473770,81474562,81489309,81513717,81615557,81616473	0.666667
SK_MEL_5_cytosolic_fraction	chr2	108607144	108607147	108607146	+	High_confidence	160	210	285	9.048014	4.394441	chr2	108606979	108607192	LTR|ERVL-MaLR|MLT1A0	+	chr2	108607160	108684448	LIMS1|ENST00000410093.5	+	108607160,108659604,108670780,108672324,108672879,108675877,108676605,108677978,108680694,108683884	108607255,108659764,108670847,108672445,108673029,108676028,108676698,108678027,108680770,108684448	0.968421
SK_MEL_5_cytosolic_fraction	chr10	30999457	30999550	30999519	-	High_confidence	20	30	113	3.587458	6.397763	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.504425
SK_MEL_5_cytosolic_fraction	chr17	42815005	42815012	42815011	-	High_confidence	4	4	9	0.285727	2.947703	chr17	42814830	42815625	LINE|L2|L2b	+	chr17	42810309	42814673	BECN1|ENST00000588276.5	-	42810309,42814523	42810928,42814673	1.000000
SK_MEL_5_cytosolic_fraction	chr9	134872635	134872636	134872635	-	High_confidence	33	36	42	1.333391	5.112200	chr9	134872476	134872826	LTR|ERVL-MaLR|THE1B	-	chr9	134819382	134872623	MSTRG.29843.1	-	134819382,134872548	134822179,134872623	0.738095
SK_MEL_5_cytosolic_fraction	chr22	49925426	49925485	49925455	+	RAMPAGE_only	3	4	14	0.444464	3.664498	chr22	49925493	49925572	LINE|CR1|L3b	+	chr22	49923209	49927528	CRELD2|ENST00000487969.1	+	49923209,49927254	49925557,49927528	0.785714
SK_MEL_5_cytosolic_fraction	chr12	66154185	66154204	66154203	-	RAMPAGE_only	35	35	100	3.174742	5.528641	chr12	66154157	66154447	LINE|L2|L2c	+	chr12	66137828	66138937	TMBIM4|ENST00000538217.1	-	66137828,66138723	66138166,66138937	0.770000
SK_MEL_5_cytosolic_fraction	chr14	24595955	24595978	24595972	+	High_confidence	2	3	10	0.317474	2.947703	chr14	24593738	24596300	LINE|L1|L1PB1	-	chr14	24595824	24658589	MSTRG.8184.8	+	24595824,24622967,24634295,24638594,24639180,24639902,24643264,24654646,24657524	24596002,24623126,24634577,24638692,24639245,24640628,24645092,24654707,24658589	0.800000
SK_MEL_5_cytosolic_fraction	chr8	3183046	3183094	3183046	-	High_confidence	85	85	513	16.286425	5.193529	chr8	3182937	3183057	SINE|Alu|AluY	-	chr8	2935467	3183146	MSTRG.27597.3	-	2935467,2942471,2949298,2950230,2951113,2954223,2955588,2957695,2961140,2962465,2963221,2965774,2966569,2973116,2974450,2978611,2998010,2999957,3018476,3029318,3052461,3087096,3091515,3096848,3106527,3107717,3108602,3110157,3118398,3142464,3151396,3157896,3162158,3181109,3182990	2938744,2942604,2949386,2950343,2951275,2954268,2955768,2957807,2961214,2962639,2963395,2965954,2966746,2973299,2974624,2978800,2998184,3000131,3018650,3029513,3052647,3087285,3091662,3097037,3106641,3107798,3108748,3110335,3118587,3142674,3151513,3157966,3162277,3181214,3183146	0.966862
SK_MEL_5_cytosolic_fraction	chr18	3852445	3852465	3852464	-	RAMPAGE_only	15	16	34	1.079412	4.862576	chr18	3851672	3852587	LINE|L1|L1M7	+	chr18	3496031	3845359	DLGAP1|ENST00000400147.6	-	3496031,3502492,3508569,3534193,3567489,3581874,3729134,3742334,3814058,3845231	3499394,3502645,3508661,3534615,3567581,3582248,3729375,3742512,3814273,3845359	0.588235
SK_MEL_5_cytosolic_fraction	chrX	15491516	15491530	15491529	-	RAMPAGE_only	3	4	9	0.285727	2.750000	chrX	15491471	15491570	SINE|MIR|MIR	-	chrX	15384798	15493341	PIR|ENST00000380420.9	-	15384798,15390184,15397448,15407505,15425905,15455847,15459656,15479728,15491161,15493189	15385116,15390251,15397531,15407550,15425990,15456054,15459740,15479821,15491309,15493341	0.888889
SK_MEL_5_cytosolic_fraction	chr6	76877074	76877075	76877074	-	High_confidence	12	13	17	0.539706	4.000000	chr6	76875759	76877075	LINE|L1|L1HS	-	chr6	76876463	76877068	MSTRG.25299.1	-	76876463	76877068	0.588235
SK_MEL_5_cytosolic_fraction	chr14	50756925	50756927	50756925	-	RAMPAGE_only	2	4	7	0.222232	2.807355	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
SK_MEL_5_nuclear_fraction	chr2	222928421	222928444	222928421	+	RAMPAGE_only	2	2	6	0.442168	2.584963	chr2	222928419	222928591	DNA|hAT-Charlie|MER102c	-	chr2	222920953	222941824	MSTRG.34296.11	+	222920953,222921279,222922707,222923077,222924455,222927016,222928861,222930620,222933165,222934529	222921068,222921430,222922831,222923149,222924595,222927189,222928936,222930812,222933280,222941824	1.000000
SK_MEL_5_nuclear_fraction	chr1	153967486	153967512	153967497	+	High_confidence	25	27	92	6.779908	5.005937	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.630435
SK_MEL_5_nuclear_fraction	chr7	30561559	30561570	30561559	-	RAMPAGE_only	7	7	13	0.958031	2.584963	chr7	30561212	30561820	DNA|hAT?|MER99	+	chr7	30548356	30564617	GARS-DT|ENST00000355837.4	-	30548356,30563722	30562128,30564617	0.692308
SK_MEL_5_nuclear_fraction	chr1	63547961	63548037	63548003	+	High_confidence	19	22	65	4.790153	5.141896	chr1	63547557	63548048	LTR|ERVL-MaLR|MLT1H	-	chr1	63548008	63571128	EFCAB7|ENST00000460678.6	+	63548008,63551047,63551724,63557112,63561708,63568309,63571020	63548350,63551090,63551834,63557247,63561857,63568519,63571128	0.692308
SK_MEL_5_nuclear_fraction	chr3	9391827	9391828	9391827	-	RAMPAGE_only	48	48	57	4.200595	4.503896	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9385835	9397428	MSTRG.38529.24	-	9385835,9390289,9397423	9385923,9391826,9397428	0.947368
SK_MEL_5_nuclear_fraction	chr12	110126329	110126341	110126329	+	RAMPAGE_only	41	48	86	6.337740	5.884931	chr12	110126296	110126646	LINE|L2|L2c	-	chr12	110127472	110218786	IFT81|ENST00000550156.5	+	110127472,110128045,110128949,110132546,110134947,110135326,110136775,110143381,110146952,110162918,110180421,110190919,110192616,110203863,110205442,110205594,110209170,110216536,110216707,110218043	110127524,110128149,110129130,110132636,110135013,110135437,110136860,110143545,110147048,110163065,110180571,110191048,110192706,110203950,110205514,110205680,110209216,110216605,110216833,110218786	0.662791
SK_MEL_5_nuclear_fraction	chr7	104797127	104797140	104797127	-	RAMPAGE_only	10	10	22	1.621282	4.011365	chr7	104796651	104797140	LTR|ERVL-MaLR|MLT1L	-	chr7	104768668	104804084	MSTRG.53976.7	-	104768668,104785219,104785730,104802838,104803955	104779346,104785378,104800069,104802963,104804084	0.909091
SK_MEL_5_nuclear_fraction	chr16	726878	726920	726901	-	High_confidence	5	5	48	3.537343	4.303341	chr16	726845	726893	LINE|L2|L2b	-	chr16	722587	726880	CCDC78|ENST00000466708.5	-	722587,722921,723094,723856,724105,724321,724910,725077,725236,725445,725793,725965,726614	722789,723022,723161,723936,724205,724806,724989,725145,725293,725580,725880,726085,726880	0.916667
SK_MEL_5_nuclear_fraction	chr10	84279967	84279968	84279967	+	High_confidence	201	227	276	20.339725	5.728076	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279979	84294659	LINC00858|ENST00000415469.5	+	84279979,84288223,84288593,84288974,84291406,84293245	84280065,84288420,84288780,84289044,84292137,84294659	0.518116
SK_MEL_5_nuclear_fraction	chr4	188624569	188624614	188624569	+	RAMPAGE_only	28	31	111	8.180107	5.658188	chr4	188624373	188624829	LTR|ERVL|LTR40a	-	chr4	188627196	188627794	MSTRG.45031.1	+	188627196	188627794	0.576577
SK_MEL_5_nuclear_fraction	chr15	33194680	33194709	33194708	-	High_confidence	6	6	16	1.179114	4.000000	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.562500
SK_MEL_5_nuclear_fraction	chrX	21767475	21767493	21767475	-	RAMPAGE_only	1	1	7	0.515863	2.584963	chrX	21767341	21767763	LTR|ERVL|LTR16A2	-	chrX	21706337	21770832	MSTRG.60701.6	-	21706337,21737548,21743749,21754245,21757941,21766271	21706394,21737697,21743836,21754302,21761942,21770832	0.857143
SK_MEL_5_nuclear_fraction	chr14	32075821	32075822	32075821	+	High_confidence	20	20	21	1.547588	3.646439	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076113	32155011	MSTRG.16353.2	+	32076113,32076457,32090501,32117139,32146262,32149901,32152422,32154620	32076217,32076657,32094386,32117287,32146340,32150033,32152528,32155011	0.809524
SK_MEL_5_nuclear_fraction	chr12	110060306	110060313	110060306	-	RAMPAGE_only	6	11	18	1.326504	4.058814	chr12	110060236	110060753	LINE|L2|L2	+	chr12	110049359	110063666	MSTRG.13741.14	-	110049359,110058987,110062514	110057296,110061618,110063666	0.944444
SK_MEL_5_nuclear_fraction	chr11	22317827	22317869	22317830	-	RAMPAGE_only	6	6	46	3.389954	5.136298	chr11	22317577	22318319	LTR|ERV1|LTR17	-	chr11	22255575	22338224	MSTRG.8780.1	-	22255575,22262168,22281541,22283729,22301279,22305656,22307236,22317546,22337994	22257257,22262254,22281643,22283824,22301399,22305807,22307374,22318046,22338224	0.717391
SK_MEL_5_nuclear_fraction	chr7	29291368	29291382	29291368	+	RAMPAGE_only	2	2	8	0.589557	2.521641	chr7	29290728	29291439	LTR|ERV1|MER50	-	chr7	29197740	29514335	CHN2|NM_001293072.1	+	29197740,29354624,29367931,29393678,29398372,29400542,29480278,29495951,29499866,29504743,29507227,29509300,29512563	29197983,29354663,29367987,29393710,29398486,29400828,29480356,29496036,29500040,29504821,29507365,29509406,29514335	0.500000
SK_MEL_5_nuclear_fraction	chr22	24011756	24011757	24011756	+	High_confidence	11	11	11	0.810641	2.732159	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.727273
SK_MEL_5_nuclear_fraction	chr3	21542742	21542766	21542742	+	High_confidence	2	2	13	0.958031	3.584963	chr3	21542638	21542962	LTR|ERV1|MER61A	+	chr3	21542788	21579959	ZNF385D-AS1|NR_046731.1	+	21542788,21579188,21579627	21542995,21579381,21579959	0.615385
SK_MEL_5_nuclear_fraction	chr3	28059403	28059478	28059477	-	RAMPAGE_only	6	6	39	2.874092	3.825846	chr3	28059242	28065270	LINE|L1|L1PA3	+	chr3	27916773	28010564	LINC01967|ENST00000643609.1	-	27916773,27917274,27929056,27930834,27967285,27987369,28010469	27916982,27917422,27929146,27930955,27967408,27987409,28010564	0.512821
SK_MEL_5_nuclear_fraction	chr1	54413473	54413493	54413492	-	High_confidence	13	13	39	2.874092	4.131770	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54412707	54413466	SSBP3|ENST00000448572.1	-	54412707,54413080,54413355	54412877,54413253,54413466	0.641026
SK_MEL_5_nuclear_fraction	chr11	65429834	65429866	65429834	+	RAMPAGE_only	6	6	29	2.137145	4.142295	chr11	65429592	65429862	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
SK_MEL_5_nuclear_fraction	chr15	66502611	66502741	66502611	-	High_confidence	13	13	119	8.769664	5.794696	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.890756
SK_MEL_5_nuclear_fraction	chr8	32927927	32927929	32927927	+	High_confidence	4	6	8	0.589557	2.750000	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927969	33050023	MSTRG.55758.1	+	32927969,32996200,33041634,33044366	32928093,32996316,33041771,33050023	0.750000
SK_MEL_5_nuclear_fraction	chr11	89285992	89286245	89286088	+	RAMPAGE_only	6	10	141	10.390946	5.332618	chr11	89285991	89286359	LINE|L2|L2c	-	chr11	89177892	89295759	MSTRG.10372.7	+	89177892,89191201,89227822,89284772,89292217	89178772,89191418,89227970,89291161,89295759	1.000000
SK_MEL_5_nuclear_fraction	chr2	95121553	95121554	95121553	-	High_confidence	7	7	11	0.810641	3.121928	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.818182
SK_MEL_5_nuclear_fraction	chr4	130888537	130888545	130888544	-	RAMPAGE_only	4	4	9	0.663252	2.750000	chr4	130886677	130888592	LTR|ERV1|MER65-int	-	chr4	130881026	130885641	AC093831.1|ENST00000509166.1	-	130881026,130885528	130881347,130885641	0.888889
SK_MEL_5_nuclear_fraction	chr8	12796227	12796358	12796357	-	High_confidence	35	45	236	17.391939	5.666508	chr8	12796147	12797467	LTR|ERV1|LTR12C	+	chr8	12765702	12796719	MSTRG.55408.2	-	12765702,12788331,12790756	12778356,12788444,12796719	0.953390
SK_MEL_5_nuclear_fraction	chr3	46558627	46558628	46558627	+	RAMPAGE_only	7	9	11	0.810641	3.095795	chr3	46558357	46558849	LINE|L1|L1MEf	-	chr3	46557397	46559688	LRRC2-AS1|ENST00000599511.1	+	46557397	46559688	0.909091
SK_MEL_5_nuclear_fraction	chr20	35732503	35732618	35732514	-	High_confidence	5	5	43	3.168870	4.689704	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.976744
SK_MEL_5_nuclear_fraction	chr9	122463966	122463996	122463995	+	High_confidence	5	7	24	1.768672	4.334963	chr9	122461383	122464408	LINE|L1|L1PB1	-	chr9	122463994	122475582	MSTRG.59644.1	+	122463994,122468560,122475077	122464749,122469185,122475582	1.000000
SK_MEL_5_nuclear_fraction	chr1	28506808	28506853	28506834	+	High_confidence	4	4	13	0.958031	3.546594	chr1	28506774	28506950	SINE|Alu|AluSg	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.923077
SK_MEL_5_nuclear_fraction	chr7	46760062	46760091	46760062	+	High_confidence	52	60	118	8.695969	4.650904	chr7	46759978	46760490	LINE|L1|L1M5	-	chr7	46760390	46760843	MSTRG.52786.1	+	46760390	46760843	0.838983
SK_MEL_5_nuclear_fraction	chr20	18411888	18411907	18411888	-	RAMPAGE_only	2	2	12	0.884336	3.095795	chr20	18411721	18412097	LTR|ERVL-MaLR|MLT1A1	-	chr20	18384076	18467281	DZANK1|ENST00000609267.5	-	18384076,18385015,18389700,18390378,18393710,18394253,18394674,18396471,18398522,18412645,18414347,18415326,18427066,18433651,18443346,18448983,18452614,18453730,18455246,18460152,18465249,18466995	18384564,18385090,18389828,18390459,18393811,18394350,18394858,18396546,18398626,18412835,18414512,18415449,18427159,18433765,18443464,18449069,18452682,18453827,18455361,18460306,18465452,18467281	0.583333
SK_MEL_5_nuclear_fraction	chr9	93146866	93146867	93146866	+	High_confidence	6	6	7	0.515863	2.584963	chr9	93146672	93147033	LTR|ERVL-MaLR|THE1B	+	chr9	93147039	93148556	AL390760.1|ENST00000366188.2	+	93147039,93147682,93148332	93147191,93147716,93148556	0.571429
SK_MEL_5_nuclear_fraction	chr3	70142008	70142040	70142008	+	RAMPAGE_only	1	1	8	0.589557	2.807355	chr3	70141916	70142692	LINE|L1|L1PB1	+	chr3	70109785	70142877	MSTRG.39914.30	+	70109785,70127686	70120184,70142877	0.750000
SK_MEL_5_nuclear_fraction	chr2	79229436	79229459	79229436	+	RAMPAGE_only	442	466	1060	78.116335	6.949063	chr2	79229241	79229597	LTR|ERVL-MaLR|THE1A	+	chr2	79281463	79506500	MSTRG.31705.3	+	79281463,79312708,79319711,79319809,79339614,79339947,79365775,79368936,79373830,79505053,79506400	79281535,79312796,79319724,79319905,79339862,79340063,79366803,79369582,79374013,79505182,79506500	0.742453
SK_MEL_5_nuclear_fraction	chr14	24595706	24595730	24595706	+	High_confidence	4	6	19	1.400198	3.683542	chr14	24593738	24596300	LINE|L1|L1PB1	-	chr14	24595722	24634492	AL136018.1|ENST00000557736.5	+	24595722,24622967,24634295	24596002,24623126,24634492	0.631579
SK_MEL_5_nuclear_fraction	chr5	80476413	80476465	80476413	+	RAMPAGE_only	3	3	13	0.958031	3.418296	chr5	80476346	80476461	SINE|Alu|AluJo	-	chr5	80472320	80479118	MSTRG.46396.20	+	80472320,80473753,80474662	80472923,80473859,80479118	0.923077
SK_MEL_5_nuclear_fraction	chr7	22725825	22726014	22725955	+	High_confidence	14	14	142	10.464641	6.230056	chr7	22725923	22726198	LTR|Gypsy?|LTR88b	+	chr7	22725883	22732002	IL6|ENST00000404625.5	+	22725883,22727178,22727443,22728692,22729513,22731405	22726258,22727281,22727634,22728806,22729660,22732002	0.612676
SK_MEL_5_nuclear_fraction	chr7	119705672	119706060	119705892	-	RAMPAGE_only	16	16	245	18.055191	6.206094	chr7	119705200	119707009	LINE|L1|L1MCb	-	chr7	119699239	119713774	MSTRG.54298.7	-	119699239,119713665	119706671,119713774	0.987755
SK_MEL_5_nuclear_fraction	chr7	95674270	95674281	95674278	-	RAMPAGE_only	12	16	47	3.463649	4.572624	chr7	95674238	95674392	SINE|Alu|AluSz6	+	chr7	95651858	95676691	MSTRG.53634.1	-	95651858	95676691	0.936170
SK_MEL_5_nuclear_fraction	chr12	28791471	28791498	28791497	-	RAMPAGE_only	5	8	30	2.210840	4.773557	chr12	28791271	28791563	LTR|ERVL|MLT2B4	+	chr12	28785953	28794936	MSTRG.12054.7	-	28785953,28791601,28794303	28791563,28793745,28794936	0.600000
SK_MEL_5_nuclear_fraction	chr8	28090198	28090232	28090231	+	High_confidence	4	5	13	0.958031	3.022055	chr8	28089941	28090482	LTR|ERVL|LTR66	+	chr8	28090230	28191156	ELP3|ENST00000521015.5	+	28090230,28097218,28099827,28106712,28107912,28110369,28113018,28129501,28132277,28137697,28155941,28158567,28160228,28161996,28189648	28090332,28097318,28099966,28106783,28107976,28110438,28113173,28129663,28132404,28137891,28156032,28158633,28160456,28162078,28191156	0.769231
SK_MEL_5_nuclear_fraction	chr20	61755072	61755073	61755072	-	High_confidence	17	17	25	1.842366	4.163856	chr20	61754915	61755267	LTR|ERVL-MaLR|THE1A	-	chr20	61746574	61755056	MSTRG.35966.4	-	61746574,61754991	61754200,61755056	0.560000
SK_MEL_5_nuclear_fraction	chr1	148279251	148279274	148279251	+	High_confidence	87	87	487	35.889297	7.090345	chr1	148279033	148279814	LINE|L1|L1MEc	+	chr1	148279246	148297372	MSTRG.3319.2	+	148279246,148287689,148292179	148279531,148289311,148297372	0.618070
SK_MEL_5_nuclear_fraction	chr6	134517209	134517266	134517217	+	High_confidence	108	111	785	57.850305	4.601586	chr6	134517183	134517246	SINE|MIR|MIR3	-	chr6	134517186	134518103	MSTRG.51066.1	+	134517186	134518103	0.994904
SK_MEL_5_nuclear_fraction	chrX	21761489	21761529	21761489	-	RAMPAGE_only	2	2	10	0.736947	2.921928	chrX	21761254	21761468	SINE|MIR|MIRc	-	chrX	21706337	21770832	MSTRG.60701.6	-	21706337,21737548,21743749,21754245,21757941,21766271	21706394,21737697,21743836,21754302,21761942,21770832	1.000000
SK_MEL_5_nuclear_fraction	chr7	104797248	104797628	104797607	-	RAMPAGE_only	17	17	218	16.065435	5.623819	chr7	104797223	104797614	LTR|ERVL-MaLR|MLT1I	+	chr7	104768668	104804084	MSTRG.53976.7	-	104768668,104785219,104785730,104802838,104803955	104779346,104785378,104800069,104802963,104804084	0.981651
SK_MEL_5_nuclear_fraction	chr13	24580612	24580623	24580622	+	High_confidence	48	55	142	10.464641	5.283479	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580607	24597675	MSTRG.14445.4	+	24580607,24581660,24583501,24589255,24594270,24595788,24597101,24597386	24580890,24581722,24587326,24589347,24594363,24595859,24597277,24597675	0.894366
SK_MEL_5_nuclear_fraction	chr5	9244625	9244640	9244625	-	RAMPAGE_only	2	2	9	0.663252	3.000000	chr5	9244536	9244693	LINE|L2|L2a	+	chr5	9202123	9265545	SEMA5A|ENST00000514923.4	-	9202123,9224673,9226868,9237827,9265433	9202240,9224887,9226967,9237890,9265545	0.555556
SK_MEL_5_nuclear_fraction	chr6	77369144	77369178	77369166	-	High_confidence	39	69	197	14.517847	6.500483	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77273159	77368975	MSTRG.50042.1	-	77273159,77350621,77368885	77273307,77350734,77368975	0.756345
SK_MEL_5_nuclear_fraction	chr7	119700886	119700913	119700902	-	RAMPAGE_only	2	3	8	0.589557	2.807355	chr7	119700707	119700958	LINE|L1|L1M5	-	chr7	119698873	119713774	MSTRG.54298.6	-	119698873,119713665	119704972,119713774	0.750000
SK_MEL_5_nuclear_fraction	chr2	174548025	174548026	174548025	-	High_confidence	359	359	508	37.436885	6.556248	chr2	174547413	174549111	LTR|ERV1|LTR12C	-	chr2	174547485	174548038	MSTRG.33245.1	-	174547485,174547897	174547795,174548038	0.759843
SK_MEL_5_nuclear_fraction	chr12	106985292	106985329	106985328	-	High_confidence	3	3	8	0.589557	2.521641	chr12	106985200	106985407	LINE|L2|L2c	+	chr12	106978455	106985286	MTERF2|ENST00000550736.1	-	106978455,106980620,106985114	106978771,106980713,106985286	0.500000
SK_MEL_5_nuclear_fraction	chr1	168220657	168220663	168220662	-	High_confidence	6	6	13	0.958031	3.180833	chr1	168220433	168220794	LTR|ERVL-MaLR|THE1D	-	chr1	168207084	168220648	MSTRG.4102.2	-	168207084,168209385	168208717,168220648	1.000000
SK_MEL_5_nuclear_fraction	chr1	67207615	67207616	67207615	+	High_confidence	21	22	22	1.621282	3.916127	chr1	67207421	67207774	LTR|ERVL-MaLR|THE1A	+	chr1	67207615	67259248	IL23R|ENST00000425614.3	+	67207615,67219573,67236712,67240178,67255836,67258477	67207698,67219730,67236802,67240281,67255927,67259248	0.590909
SK_MEL_5_nuclear_fraction	chr5	16458978	16458990	16458978	-	RAMPAGE_only	2	2	8	0.589557	3.000000	chr5	16458949	16459168	DNA|hAT-Charlie|MER3	+	chr5	16451518	16465785	ZNF622|NM_033414.2	-	16451518,16453012,16458516,16463107,16463481,16465040	16451784,16453156,16458629,16463270,16463742,16465785	1.000000
SK_MEL_5_nuclear_fraction	chr3	69940853	69940874	69940873	+	RAMPAGE_only	3	3	11	0.810641	3.277613	chr3	69940798	69941024	SINE|MIR|MIR	+	chr3	69936722	69965248	MITF|ENST00000531774.1	+	69936722,69937821,69939097,69941235,69949050,69951829,69956454,69959272,69964846	69936755,69937881,69939181,69941331,69949168,69951886,69956530,69959420,69965248	0.727273
SK_MEL_5_nuclear_fraction	chr7	100355214	100355215	100355214	+	RAMPAGE_only	5	5	8	0.589557	2.500000	chr7	100355125	100355232	LINE|L1|L1MD	-	chr7	100353735	100359014	PILRB|ENST00000431140.5	+	100353735,100355142,100356749,100358219,100358898	100354012,100355240,100356883,100358366,100359014	0.625000
SK_MEL_5_nuclear_fraction	chr7	100355159	100355178	100355177	+	RAMPAGE_only	8	9	27	1.989756	4.384517	chr7	100355125	100355232	LINE|L1|L1MD	-	chr7	100353028	100400099	MSTRG.53807.27	+	100353028,100353209,100353372,100355142,100356749,100358219,100358689,100359336,100361147,100367348,100373580,100374043,100389887,100397878,100399290,100399580,100399784	100353123,100353270,100354012,100355240,100356883,100358366,100359079,100359537,100361383,100367617,100373720,100374433,100390106,100397912,100399340,100399612,100400099	0.814815
SK_MEL_5_nuclear_fraction	chr19	49086520	49086547	49086537	+	High_confidence	5	5	13	0.958031	3.238901	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.923077
SK_MEL_5_nuclear_fraction	chr17	79960525	79960584	79960562	-	High_confidence	11	20	72	5.306015	4.855590	chr17	79960476	79960790	SINE|Alu|AluSx	+	chr17	79932345	79960730	MSTRG.25795.2	-	79932345,79942059,79948871,79949716,79950410,79951449,79952656,79954531	79941107,79947831,79949006,79949865,79950578,79951597,79952818,79960730	0.972222
SK_MEL_5_nuclear_fraction	chr21	10336875	10336886	10336875	-	RAMPAGE_only	7	7	19	1.400198	3.503258	chr21	10336723	10337020	SINE|Alu|AluY	-	chr21	10325559	10342713	MSTRG.36198.1	-	10325559	10342713	0.947368
SK_MEL_5_nuclear_fraction	chr21	8351847	8351848	8351847	-	RAMPAGE_only	78	82	82	6.042962	4.864277	chr21	8350922	8352925	Retroposon|SVA|SVA_D	-	chr21	8210383	8211306	FP671120.3|ENST00000631211.1	-	8210383	8211306	0.670732
SK_MEL_5_nuclear_fraction	chr2	61178405	61178437	61178436	+	High_confidence	2	2	6	0.442168	2.584963	chr2	61178267	61178502	SINE|Alu|AluSx3	-	chr2	61178377	61186769	AHSA2P|ENST00000642505.1	+	61178377,61181319,61183546,61184711,61185501,61185979,61186445,61186616	61179171,61181405,61183662,61184800,61185618,61186081,61186497,61186769	1.000000
SK_MEL_5_nuclear_fraction	chr8	89603976	89604035	89603987	-	RAMPAGE_only	4	5	32	2.358229	4.163910	chr8	89603946	89604075	LTR|ERVL|LTR33B	+	chr8	89584950	89611889	MSTRG.56772.4	-	89584950,89596418,89596933,89611433	89588050,89596512,89609494,89611889	1.000000
SK_MEL_5_nuclear_fraction	chr8	107336500	107336581	107336580	-	High_confidence	92	93	686	50.554534	5.784611	chr8	107336384	107336688	SINE|Alu|AluY	+	chr8	107251511	107336522	ANGPT1|ENST00000520734.5	-	107251511,107264220,107284681,107293935,107303239,107321895,107336149,107336383	107252015,107264351,107284848,107294037,107303367,107322128,107336271,107336522	0.909621
SK_MEL_5_nuclear_fraction	chr11	90251204	90251205	90251204	+	High_confidence	5	7	8	0.589557	2.521641	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.500000
SK_MEL_5_nuclear_fraction	chr2	191323151	191323164	191323152	+	RAMPAGE_only	12	23	64	4.716458	5.394309	chr2	191322769	191323409	LTR|ERV1|MER41B	-	chr2	191276884	191425389	MYO1B|ENST00000392316.5	+	191276884,191296110,191329934,191341460,191346235,191350161,191360630,191362267,191363727,191364157,191369541,191370226,191381461,191383279,191385883,191387223,191390291,191392107,191393072,191396428,191400381,191402631,191408114,191409043,191411065,191414047,191414516,191416114,191423836	191277030,191296226,191330029,191341565,191346282,191350225,191360729,191362371,191363875,191364276,191369628,191370292,191381566,191383342,191386084,191387450,191390492,191392201,191393222,191396497,191400468,191402718,191408189,191409178,191411172,191414180,191414669,191416242,191425389	0.625000
SK_MEL_5_nuclear_fraction	chr3	4736873	4736898	4736885	+	RAMPAGE_only	4	5	21	1.547588	3.517816	chr3	4736889	4737207	DNA|hAT-Charlie|Charlie18a	+	chr3	4699830	4738325	ITPR1|ENST00000649414.1	+	4699830,4702829,4706166,4710324,4711756,4717366,4725545,4727125,4733087,4735163,4737178	4699941,4702950,4706351,4710473,4711868,4717399,4725581,4727173,4733220,4735354,4738325	1.000000
SK_MEL_5_nuclear_fraction	chr20	9338402	9338464	9338441	+	RAMPAGE_only	7	7	43	3.168870	4.880180	chr20	9338402	9338674	SINE|Alu|AluJb	+	chr20	9307799	9480816	PLCB4|NM_000933.3	+	9307799,9337125,9338007,9338893,9362895,9365460,9371213,9372302,9373046,9380053,9384200,9387462,9389878,9390530,9393587,9395522,9401489,9407916,9408632,9409056,9411036,9419806,9421296,9423747,9435559,9437001,9443980,9444177,9453346,9457413,9459634,9468570,9472789,9473278,9476716,9478920	9307898,9337206,9338067,9339037,9362975,9365514,9371295,9372403,9373104,9380162,9384411,9387556,9389958,9390615,9393678,9395618,9401590,9408058,9408717,9409181,9411088,9419909,9421461,9423952,9435648,9437152,9444030,9444243,9453462,9457489,9459810,9468672,9472847,9473365,9476753,9480816	0.767442
SK_MEL_5_nuclear_fraction	chr15	66500621	66500630	66500629	-	RAMPAGE_only	3	3	8	0.589557	2.807355	chr15	66500511	66500805	SINE|Alu|AluSx	+	chr15	66499345	66504827	RPL4|ENST00000561775.5	-	66499345,66500055,66500292,66500948,66501374,66501787,66502611,66503357,66504787	66499652,66500176,66500376,66501105,66501504,66501912,66502871,66503529,66504827	0.625000
SK_MEL_5_nuclear_fraction	chr2	201115941	201115991	201115941	+	High_confidence	3	3	19	1.400198	3.947703	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.842105
SK_MEL_5_nuclear_fraction	chr7	53811930	53811942	53811934	-	High_confidence	683	698	2197	161.907159	7.101812	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.634046
SK_MEL_5_nuclear_fraction	chr22	32222386	32222428	32222386	-	RAMPAGE_only	2	2	16	1.179114	3.640224	chr22	32222126	32222368	LINE|L1|HAL1	-	chr22	32213466	32233248	MSTRG.37640.2	-	32213466,32213835,32220919,32229193,32230967,32232898,32233148	32213699,32218725,32225823,32229344,32231075,32233034,32233248	0.937500
SK_MEL_5_nuclear_fraction	chr5	80442802	80442858	80442802	+	High_confidence	2	2	16	1.179114	3.773557	chr5	80442407	80442849	LINE|L2|L2a	-	chr5	80443048	80479153	ZFYVE16|ENST00000511829.5	+	80443048,80445262,80448282,80449590,80450430,80451484,80455691,80456460,80456944,80459413,80472760,80473753,80474662,80477218	80443284,80445405,80448404,80449713,80450586,80451709,80455774,80456565,80457092,80459494,80472923,80473859,80474830,80479153	0.562500
SK_MEL_5_nuclear_fraction	chr9	3331042	3331087	3331086	-	RAMPAGE_only	7	7	27	1.989756	4.088221	chr9	3331035	3331297	LINE|L2|L2b	+	chr9	3323960	3346764	RFX3|ENST00000442560.5	-	3323960,3330258,3346666	3324129,3330517,3346764	0.518519
SK_MEL_5_nuclear_fraction	chr3	194649180	194649234	194649182	-	High_confidence	4	7	29	2.137145	3.456974	chr3	194649170	194649366	LINE|L2|L2c	+	chr3	194642172	194649019	LSG1|ENST00000460584.1	-	194642172,194644572,194646163,194648680	194642247,194644746,194646243,194649019	1.000000
SK_MEL_5_nuclear_fraction	chr13	64075992	64076026	64076008	-	High_confidence	38	39	265	19.529084	5.509479	chr13	64075759	64076092	LTR|ERV1|MER52A	-	chr13	63986370	64076011	LINC00355|ENST00000456627.1	-	63986370,63990095,64002384,64003347,64034346,64075241	63987039,63990200,64002409,64003465,64034537,64076011	0.973585
SK_MEL_5_nuclear_fraction	chr11	93733780	93733848	93733780	-	High_confidence	4	4	22	1.621282	3.823068	chr11	93733698	93733829	SINE|Alu|AluJo	-	chr11	93730282	93734661	TAF1D|ENST00000525928.5	-	93730282,93730676,93731149,93731752,93732243,93733086,93733349	93730447,93730712,93731216,93731799,93732291,93733121,93734661	0.863636
SK_MEL_5_nuclear_fraction	chr15	97521626	97521655	97521630	-	High_confidence	7	8	25	1.842366	4.136842	chr15	97521399	97521640	SINE|tRNA|LFSINE_Vert	+	chr15	97370370	97521811	LINC02254|ENST00000558621.2	-	97370370,97397656,97427650,97515286,97521580	97371341,97397740,97427952,97515424,97521811	0.600000
SK_MEL_5_nuclear_fraction	chr14	24595832	24595872	24595845	+	High_confidence	135	155	797	58.734641	6.459556	chr14	24593738	24596300	LINE|L1|L1PB1	-	chr14	24595849	24646677	MSTRG.16199.6	+	24595849,24622967,24634295,24638594,24639902,24643264	24596002,24623126,24634577,24639262,24640628,24646677	0.701380
SK_MEL_5_nuclear_fraction	chr16	27760156	27760170	27760169	+	High_confidence	6	6	17	1.252809	3.155639	chr16	27760106	27760197	SINE|MIR|MIR3	+	chr16	27760201	27780369	MSTRG.21542.14	+	27760201,27761412,27766308,27769860,27771587,27773098,27777609,27777880,27778573	27760229,27761590,27766474,27770018,27771652,27777029,27777770,27777969,27780369	0.941176
SK_MEL_5_nuclear_fraction	chrX	14029580	14029601	14029600	-	High_confidence	103	107	283	20.855588	5.660535	chrX	14029400	14029569	DNA|hAT-Charlie|MER5B	-	chrX	14006712	14029840	MSTRG.60580.1	-	14006712,14008870,14020077,14021463,14026139	14007870,14009169,14020534,14021511,14029840	0.971731
SK_MEL_5_nuclear_fraction	chr1	147173173	147173220	147173173	+	High_confidence	9	10	30	2.210840	4.280395	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.633333
SK_MEL_5_nuclear_fraction	chr12	40564805	40564945	40564828	+	RAMPAGE_only	12	12	71	5.232321	4.950882	chr12	40564680	40564972	LINE|L2|L2b	-	chr12	40508011	40570753	MSTRG.12179.12	+	40508011,40509033,40509218,40509958,40510168,40510796,40510970,40512167,40513528,40513730,40514389,40514974,40515173,40515441,40516100,40516413,40516613,40517181,40517852,40518510,40518805,40519002,40519918,40520426,40520723,40520914,40521473,40521624,40522642,40523391,40523588,40524515,40525074,40525382,40525567,40526272,40527095,40527290,40527754,40528056,40528256,40529176,40530272,40530457,40531056,40531208,40532028,40532228,40533024,40533232,40534155,40534710,40535012,40535203,40535764,40535905,40536439,40536922,40537395,40537661,40537853,40538793,40539528,40541618,40541814,40542273,40542561,40542764,40543788,40544351,40544638,40545049,40545335,40545955,40546395,40546602,40547134,40547771,40548577,40549596,40549895,40550104,40550481,40550680,40557144,40557463,40557817,40558092,40559234,40560535,40561000,40561338,40561561,40563530,40566125,40567597,40569002,40569695,40570462	40508068,40509087,40509272,40510012,40510222,40510850,40511024,40512221,40513582,40513784,40514443,40515028,40515218,40515495,40516145,40516467,40516667,40517235,40517906,40518543,40518859,40519056,40519972,40520456,40520777,40520968,40521527,40521679,40522696,40523445,40523642,40524569,40525107,40525430,40525621,40526326,40527149,40527344,40527787,40528110,40528307,40529230,40530320,40530511,40531110,40531262,40532082,40532282,40533078,40533283,40534209,40534743,40535066,40535257,40535809,40535959,40536484,40536976,40537428,40537715,40537907,40538847,40539561,40541672,40541868,40542306,40542615,40542818,40543842,40544384,40544692,40545097,40545398,40546003,40546449,40546656,40547182,40547825,40548631,40549644,40549949,40550158,40550535,40550734,40557195,40557517,40557871,40558134,40559288,40560589,40561054,40561392,40561609,40565795,40566163,40567833,40569042,40569804,40570753	1.000000
SK_MEL_5_nuclear_fraction	chr7	113624995	113625012	113624995	-	RAMPAGE_only	4	4	11	0.810641	2.646439	chr7	113624760	113625126	LTR|ERVL-MaLR|THE1B	-	chr7	113487232	113497781	MSTRG.54202.1	-	113487232,113497582	113487637,113497781	0.818182
SK_MEL_5_nuclear_fraction	chr17	18856153	18856206	18856196	-	High_confidence	22	25	53	3.905817	4.578809	chr17	18856136	18856308	LTR|ERVL-MaLR|MLT1K	-	chr17	18855721	18856195	MSTRG.23727.1	-	18855721	18856195	0.905660
SK_MEL_5_nuclear_fraction	chr20	25241377	25241432	25241377	-	RAMPAGE_only	2	2	16	1.179114	3.750000	chr20	25241245	25242215	LTR|ERVK|LTR5_Hs	+	chr20	25239006	25245229	AL121772.1|ENST00000618303.1	-	25239006,25245119	25241231,25245229	1.000000
SK_MEL_5_nuclear_fraction	chr11	90615524	90615544	90615543	+	High_confidence	3	3	8	0.589557	2.521641	chr11	90615518	90615579	SINE|MIR|MIRb	-	chr11	90616022	90618716	MSTRG.10415.1	+	90616022	90618716	0.625000
SK_MEL_5_nuclear_fraction	chr12	67715633	67715667	67715666	-	RAMPAGE_only	5	6	16	1.179114	3.452820	chr12	67715637	67715986	LTR|ERVL-MaLR|MLT1J	+	chr12	67709046	67729475	LINC02421|ENST00000542219.1	-	67709046,67715321,67718342,67722378,67729395	67710685,67716203,67718541,67722713,67729475	0.937500
SK_MEL_5_nuclear_fraction	chr16	2205756	2205875	2205823	+	High_confidence	37	38	410	30.214809	5.697975	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.939024
SK_MEL_5_nuclear_fraction	chr18	77128380	77128385	77128380	-	High_confidence	24	29	38	2.800397	4.548688	chr18	77125932	77128521	LINE|L1|L1MD2	+	chr18	77066311	77127712	MBP|ENST00000583798.1	-	77066311,77105210,77127289	77066385,77105286,77127712	0.631579
SK_MEL_5_nuclear_fraction	chr4	4416183	4416238	4416183	+	RAMPAGE_only	4	4	13	0.958031	2.931209	chr4	4416096	4416227	SINE|MIR|MIRb	-	chr4	4386537	4418298	MSTRG.42328.10	+	4386537,4387603,4391474,4409572,4416154	4387173,4387758,4391591,4409683,4418298	1.000000
SK_MEL_5_nuclear_fraction	chr12	121582260	121582280	121582278	-	RAMPAGE_only	22	33	73	5.379710	5.518499	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121444014	121581127	MSTRG.14058.11	-	121444014,121444449,121445274,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549455,121574546,121575780,121578801,121581023	121444272,121444536,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548979,121549638,121574593,121575859,121578946,121581127	0.630137
SK_MEL_5_nuclear_fraction	chr11	62126264	62126297	62126296	+	RAMPAGE_only	6	7	16	1.179114	3.280639	chr11	62126200	62126495	SINE|Alu|AluSx3	-	chr11	62124010	62137976	INCENP|ENST00000528037.1	+	62124010,62128150,62128769,62129781,62137831	62124163,62128301,62128883,62130590,62137976	0.625000
SK_MEL_5_nuclear_fraction	chr12	110060347	110060362	110060361	-	RAMPAGE_only	15	15	36	2.653008	4.771143	chr12	110060236	110060753	LINE|L2|L2	+	chr12	110056915	110057275	AC007546.2|ENST00000623996.1	-	110056915	110057275	0.500000
SK_MEL_5_nuclear_fraction	chrX	103685557	103685614	103685613	-	High_confidence	3	3	14	1.031725	3.546594	chrX	103685462	103685634	LINE|L1|L1MC5	-	chrX	103676915	103685505	MORF4L2|ENST00000474653.5	-	103676915,103678498,103685170	103677051,103678600,103685505	0.642857
SK_MEL_5_nuclear_fraction	chr7	87039782	87039800	87039799	-	High_confidence	4	5	8	0.589557	2.521641	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.625000
SK_MEL_5_nuclear_fraction	chr4	14944915	14945082	14944915	+	High_confidence	222	235	623	45.911771	6.232281	chr4	14944820	14945113	SINE|Alu|AluYa5	-	chr4	14944923	14951401	MSTRG.42556.1	+	14944923	14951401	0.985554
SK_MEL_5_nuclear_fraction	chr12	15764158	15764160	15764158	-	RAMPAGE_only	10	13	17	1.252809	3.500000	chr12	15763995	15764357	LTR|ERVL-MaLR|THE1B	-	chr12	15620157	15789370	EPS8|ENST00000543468.5	-	15620157,15623157,15624226,15631441,15640702,15641721,15647126,15650822,15654144,15658078,15658496,15660613,15662025,15666439,15669386,15669663,15670855,15681225,15682892,15789160	15621430,15623287,15624407,15631664,15640846,15641830,15647260,15651006,15654293,15658153,15658585,15660740,15662099,15666522,15669536,15669825,15670923,15681302,15682972,15789370	0.705882
SK_MEL_5_nuclear_fraction	chr21	10327903	10328016	10327970	-	RAMPAGE_only	4	4	34	2.505618	4.640320	chr21	10327678	10327984	SINE|Alu|AluSc5	-	chr21	10325559	10342713	MSTRG.36198.1	-	10325559	10342713	0.941176
SK_MEL_5_nuclear_fraction	chr4	149942977	149943017	149942977	+	RAMPAGE_only	3	3	10	0.736947	2.725481	chr4	149942429	149943268	LTR|ERVL|MER21C	+	chr4	149956207	149958572	AC105343.1|ENST00000505586.1	+	149956207,149958280	149956273,149958572	0.600000
SK_MEL_5_nuclear_fraction	chr6	52423743	52423782	52423743	+	High_confidence	2	2	7	0.515863	2.521641	chr6	52423684	52423805	SINE|Alu|AluJb	-	chr6	52423808	52495783	EFHC1|ENST00000538167.2	+	52423808,52423945,52438303,52452687,52454094,52464894,52469332,52479036,52479639,52490139,52492269	52423814,52424167,52438591,52452837,52454287,52465115,52469473,52479250,52479787,52490350,52495783	0.857143
SK_MEL_5_nuclear_fraction	chr17	18537964	18538024	18538023	-	RAMPAGE_only	5	5	22	1.621282	3.572624	chr17	18537305	18538874	LINE|L1|L1PB1	-	chr17	18519490	18625608	MSTRG.23672.23	-	18519490,18532505,18532711,18543672,18551505,18553152,18553972,18579656,18582657,18583340,18587665,18594720,18595147,18603603,18605779,18607896,18610043,18622498,18625103	18519674,18532597,18542187,18543715,18551715,18553373,18554266,18580610,18582786,18583523,18587879,18594862,18595181,18603740,18606619,18607970,18610292,18622569,18625608	1.000000
SK_MEL_5_nuclear_fraction	chr12	9398613	9398846	9398845	-	RAMPAGE_only	18	18	190	14.001985	5.124558	chr12	9398769	9399468	LINE|L1|L1MA9	+	chr12	9397039	9407536	MSTRG.11558.2	-	9397039,9401746,9402426,9406307	9400326,9401859,9402556,9407536	1.000000
SK_MEL_5_nuclear_fraction	chr7	104760164	104760188	104760164	-	RAMPAGE_only	2	2	6	0.442168	2.584963	chr7	104760001	104760190	DNA|hAT-Charlie|MER5A	-	chr7	104738597	104804084	MSTRG.53976.2	-	104738597,104744049,104752714,104761473,104785219,104798336,104802838,104803955	104738955,104744180,104759822,104761580,104786581,104800069,104802963,104804084	0.500000
SK_MEL_5_nuclear_fraction	chr5	57302183	57302184	57302183	-	High_confidence	137	146	158	11.643756	5.787638	chr5	57302006	57302382	LTR|ERVL-MaLR|THE1C	-	chr5	57291130	57302659	MSTRG.45943.1	-	57291130	57302659	0.974684
SK_MEL_5_nuclear_fraction	chr9	109002230	109002246	109002243	-	RAMPAGE_only	128	133	346	25.498351	6.890117	chr9	109002078	109002410	LTR|ERVL-MaLR|MLT1A0	-	chr9	108942568	109013522	CTNNAL1|ENST00000374595.8	-	108942568,108942960,108943702,108943961,108948185,108952208,108952443,108955789,108965377,108970401,108972674,108976961,108979280,108983144,108984346,108990725,108992631,108999066,109013301	108942871,108943044,108943816,108944018,108948234,108952363,108952494,108955827,108965528,108970494,108972833,108977048,108979481,108983315,108984436,108990845,108992819,108999256,109013522	0.621387
SK_MEL_5_nuclear_fraction	chr20	18794063	18794086	18794085	+	High_confidence	154	155	485	35.741908	5.819750	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.975258
SK_MEL_5_nuclear_fraction	chr15	78290796	78290934	78290826	-	High_confidence	4	4	39	2.874092	3.920805	chr15	78290809	78291087	SINE|Alu|AluSz	-	chr15	78290526	78291221	AC090607.2|ENST00000560331.2	-	78290526	78291221	0.820513
SK_MEL_5_nuclear_fraction	chr12	53033988	53034022	53034021	+	RAMPAGE_only	4	4	12	0.884336	3.095795	chr12	53034069	53034237	DNA|hAT-Charlie|MER20B	+	chr12	53037725	53040352	EIF4B|ENST00000549592.1	+	53037725,53039629,53040142	53039343,53039702,53040352	0.833333
SK_MEL_5_nuclear_fraction	chr7	119704801	119704802	119704801	-	RAMPAGE_only	5	5	7	0.515863	2.584963	chr7	119704713	119704777	LINE|L1|L1MCb	-	chr7	119698873	119713774	MSTRG.54298.6	-	119698873,119713665	119704972,119713774	0.857143
SK_MEL_5_nuclear_fraction	chr17	2975621	2975682	2975635	+	RAMPAGE_only	3	3	22	1.621282	3.749903	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.590909
SK_MEL_5_nuclear_fraction	chr15	93900598	93900599	93900598	-	High_confidence	47	48	59	4.347985	5.094797	chr15	93899800	93901385	LTR|ERV1|MER52A	-	chr15	93899262	93900337	LINC01579|ENST00000554261.1	-	93899262,93900035	93899336,93900337	0.711864
SK_MEL_5_nuclear_fraction	chr18	12420020	12420036	12420020	+	High_confidence	4	4	13	0.958031	3.180833	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12420016	12429364	PRELID3A|ENST00000587862.5	+	12420016,12420324,12421539,12427040,12427220,12429349	12420148,12420493,12421629,12427111,12427323,12429364	0.615385
SK_MEL_5_nuclear_fraction	chr3	123954837	123954856	123954837	-	RAMPAGE_only	2	2	11	0.810641	2.721928	chr3	123954458	123954794	DNA|hAT-Charlie|Charlie5	-	chr3	123913716	123957083	CCDC14|ENST00000485727.5	-	123913716,123931101,123931307,123933672,123944848,123946802,123948690,123948895,123952594	123915718,123931234,123931526,123933755,123944990,123947319,123948785,123949132,123957083	0.909091
SK_MEL_5_nuclear_fraction	chr1	71066171	71066216	71066171	-	RAMPAGE_only	10	10	24	1.768672	3.653107	chr1	71066049	71066307	LINE|CR1|L3b	+	chr1	71063296	71067513	ZRANB2|ENST00000477096.1	-	71063296,71065677	71065137,71067513	0.791667
SK_MEL_5_nuclear_fraction	chr2	169962414	169962416	169962415	+	RAMPAGE_only	4	7	8	0.589557	2.807355	chr2	169962371	169962537	LTR|ERVL-MaLR|MLT1F	+	chr2	169964893	170084131	MSTRG.33126.7	+	169964893,169986644,169994322,170001303,170006989,170008803,170013840,170015280,170029345,170040881,170055459,170061078,170061317,170073427,170079813,170080544,170081725	169964966,169986794,169994456,170001414,170007190,170008940,170013972,170015366,170029448,170040985,170055584,170061186,170061443,170073607,170080023,170080684,170084131	0.625000
SK_MEL_5_nuclear_fraction	chr12	127060467	127060498	127060497	+	High_confidence	18	18	48	3.537343	4.360088	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060494	127062282	MSTRG.14194.1	+	127060494	127062282	0.979167
SK_MEL_5_nuclear_fraction	chr1	240338994	240339037	240339018	+	RAMPAGE_only	2	3	9	0.663252	2.750000	chr1	240338677	240339204	DNA|hAT-Charlie|MER1A	-	chr1	240329143	240475183	FMN2|ENST00000545751.2	+	240329143,240329338,240330602,240333886,240334108,240334120,240355815,240392510,240438060,240472371,240474127	240329167,240329468,240330749,240333946,240334118,240334229,240355908,240392562,240438210,240472453,240475183	0.777778
SK_MEL_5_nuclear_fraction	chr11	72252785	72252792	72252789	+	High_confidence	7	13	33	2.431924	4.862576	chr11	72252591	72252896	LTR|ERVL-MaLR|THE1B	+	chr11	72252774	72302961	MSTRG.9978.2	+	72252774,72299962,72300365,72300732,72301765	72252872,72300180,72300461,72300929,72302961	0.575758
SK_MEL_5_nuclear_fraction	chr5	80409633	80409726	80409725	+	RAMPAGE_only	10	12	66	4.863847	4.928620	chr5	80409398	80409750	DNA|hAT-Charlie|Charlie1a	-	chr5	80408114	80410340	ZFYVE16|ENST00000512442.1	+	80408114,80409691	80408153,80410340	0.742424
SK_MEL_5_nuclear_fraction	chr8	126832330	126832344	126832341	-	High_confidence	24	36	144	10.612030	5.567416	chr8	126832167	126832531	LTR|ERVL-MaLR|THE1B	-	chr8	126830386	126832322	MSTRG.57417.1	-	126830386	126832322	0.965278
SK_MEL_5_nuclear_fraction	chr21	18759999	18760069	18760042	-	High_confidence	19	19	61	4.495374	5.426559	chr21	18759779	18760548	LTR|ERV1|LTR17	-	chr21	18561264	18760003	MIR548XHG|ENST00000437492.5	-	18561264,18589526,18737923,18759773	18561691,18589620,18738025,18760003	0.557377
SK_MEL_5_nuclear_fraction	chr2	217277976	217277980	217277979	+	RAMPAGE_only	10	10	17	1.252809	3.625000	chr2	217277834	217277987	SINE|MIR|MIR3	-	chr2	217282732	217344204	DIRC3-AS1|NR_133642.1	+	217282732,217295903,217296631,217302685,217335957,217344169	217282809,217295987,217296770,217302785,217336581,217344204	0.647059
SK_MEL_5_nuclear_fraction	chr13	91660426	91660440	91660426	+	RAMPAGE_only	7	7	16	1.179114	3.240224	chr13	91660350	91660643	LTR|ERVL-MaLR|MLT1F2	+	chr13	91693185	91756424	GPC5|ENST00000618596.1	+	91693185,91728531,91756294	91693881,91728665,91756424	0.500000
SK_MEL_5_nuclear_fraction	chr1	49258028	49258062	49258028	-	RAMPAGE_only	6	6	18	1.326504	3.308271	chr1	49257808	49263310	LINE|L1|L1PA3	+	chr1	48817506	50023900	AGBL4|ENST00000371836.1	-	48817506,48867190,49045583,49245769,49697312,49851395,50023762	48818222,48867230,49045800,49245864,49697437,49851518,50023900	0.777778
SK_MEL_5_nuclear_fraction	chr3	70000120	70000319	70000146	+	High_confidence	19	21	135	9.948779	5.874249	chr3	70000000	70000359	LTR|ERV1|LTR1A2	+	chr3	69999886	70002703	MSTRG.39915.1	+	69999886	70002703	0.992593
SK_MEL_5_nuclear_fraction	chr10	86981210	86981264	86981263	+	High_confidence	161	176	279	20.560809	6.475951	chr10	86981077	86981384	LTR|ERVL-MaLR|THE1C	+	chr10	86981226	87010203	MSTRG.7130.6	+	86981226,86983158,86992246,86993361,86994823,86999448,87000318,87001635,87003087,87004324,87007654,87008354	86981322,86983941,86992469,86993552,86994903,86999591,87000434,87001736,87003421,87004360,87007706,87010203	0.960573
SK_MEL_5_nuclear_fraction	chr11	22318076	22318137	22318076	-	RAMPAGE_only	6	6	22	1.621282	3.558519	chr11	22317577	22318319	LTR|ERV1|LTR17	-	chr11	22255575	22338224	MSTRG.8780.1	-	22255575,22262168,22281541,22283729,22301279,22305656,22307236,22317546,22337994	22257257,22262254,22281643,22283824,22301399,22305807,22307374,22318046,22338224	0.954545
SK_MEL_5_nuclear_fraction	chr8	116648810	116648831	116648830	-	RAMPAGE_only	3	4	7	0.515863	2.521641	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.857143
SK_MEL_5_nuclear_fraction	chr15	98103717	98103718	98103717	-	High_confidence	18	18	20	1.473893	3.141446	chr15	98103301	98104789	LTR|ERV1|LTR12C	-	chr15	98085692	98103712	LINC01582|ENST00000560195.1	-	98085692,98103234	98085774,98103712	0.850000
SK_MEL_5_nuclear_fraction	chr13	69222096	69222126	69222125	+	High_confidence	2	3	7	0.515863	2.584963	chr13	69221625	69222417	LTR|ERV1|LTR17	+	chr13	69222323	69322190	LINC00383|ENST00000648574.1	+	69222323,69275139,69311334,69311953,69321344	69222448,69275264,69311396,69312086,69322190	0.571429
SK_MEL_5_nuclear_fraction	chr3	194649263	194649355	194649263	-	High_confidence	2	3	14	1.031725	3.039149	chr3	194649170	194649366	LINE|L2|L2c	+	chr3	194642172	194649019	LSG1|ENST00000460584.1	-	194642172,194644572,194646163,194648680	194642247,194644746,194646243,194649019	0.928571
SK_MEL_5_nuclear_fraction	chr2	48047317	48047362	48047326	+	High_confidence	54	55	180	13.265038	5.552701	chr2	48047215	48047467	LTR|ERVL|MLT2F	+	chr2	48047330	48091865	MSTRG.30903.1	+	48047330,48090106	48047764,48091865	0.972222
SK_MEL_5_nuclear_fraction	chr12	40502909	40502944	40502909	+	RAMPAGE_only	1	1	9	0.663252	3.000000	chr12	40502742	40502910	LINE|L2|L2a	+	chr12	40444406	40507894	MSTRG.12179.4	+	40444406,40445518,40446487,40447324,40448165,40449688,40450260,40450671,40458730,40460234,40463436,40464119,40464420,40465138,40465454,40465972,40473140,40474759,40475095,40475569,40479052,40481613,40489457,40493946,40494118,40498243,40498952,40499403,40499696,40500174,40501152,40501357,40502042,40503665,40504391,40505113,40506078,40506263,40506738,40507212,40507840	40444545,40445644,40446629,40447356,40448195,40449730,40450293,40450716,40458769,40460333,40463505,40464203,40464498,40465213,40465589,40466038,40473239,40474861,40475197,40475665,40481583,40488497,40491305,40494012,40494172,40498297,40499006,40499448,40499750,40500228,40501206,40501411,40503531,40503719,40504445,40505167,40506132,40506317,40507056,40507266,40507894	0.888889
SK_MEL_5_nuclear_fraction	chr3	185959708	185959748	185959745	+	High_confidence	3	3	9	0.663252	2.947703	chr3	185959492	185959826	SINE|Alu|AluSq2	+	chr3	185959961	185975198	NMRAL2P|ENST00000422108.5	+	185959961,185968478,185971614,185975165	185960078,185968649,185971864,185975198	0.555556
SK_MEL_5_nuclear_fraction	chr2	12715028	12715063	12715062	+	High_confidence	4	5	16	1.179114	3.875000	chr2	12714893	12715124	LINE|L2|L2c	+	chr2	12715414	12716227	AC009486.1|ENST00000569860.1	+	12715414	12716227	0.562500
SK_MEL_5_nuclear_fraction	chr7	119701207	119701504	119701503	-	RAMPAGE_only	9	9	127	9.359221	5.659587	chr7	119701416	119701850	LTR|ERVL-MaLR|MLT1C	-	chr7	119698873	119713774	MSTRG.54298.6	-	119698873,119713665	119704972,119713774	0.992126
SK_MEL_5_nuclear_fraction	chr5	27478724	27478792	27478724	+	RAMPAGE_only	6	6	49	3.611038	4.425635	chr5	27478578	27479376	LINE|L1|L1PA3	+	chr5	27472291	27496280	MSTRG.45475.1	+	27472291,27475534	27472519,27496280	1.000000
SK_MEL_5_nuclear_fraction	chrX	21760081	21760116	21760115	-	RAMPAGE_only	3	3	13	0.958031	3.418296	chrX	21759874	21760187	LTR|ERVL|LTR16C	+	chrX	21706337	21770832	MSTRG.60701.6	-	21706337,21737548,21743749,21754245,21757941,21766271	21706394,21737697,21743836,21754302,21761942,21770832	0.923077
SK_MEL_5_nuclear_fraction	chr14	102235279	102235280	102235279	-	High_confidence	18	18	25	1.842366	3.386842	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102226139	102235424	MOK|ENST00000561150.5	-	102226139,102232534,102233687,102235364	102226408,102232671,102233789,102235424	0.920000
SK_MEL_5_nuclear_fraction	chr7	107697580	107697599	107697598	+	RAMPAGE_only	17	17	35	2.579313	4.229004	chr7	107697605	107697802	SINE|MIR|MIRc	+	chr7	107694428	107717352	SLC26A4|ENST00000644846.1	+	107694428,107694620,107695932,107698041,107700082,107701100,107701826,107710053,107712538,107715422	107694480,107694716,107696039,107698111,107700175,107701196,107702057,107710199,107712622,107717352	0.685714
SK_MEL_5_nuclear_fraction	chr13	45334874	45334896	45334895	-	RAMPAGE_only	4	4	11	0.810641	3.121928	chr13	45334300	45335000	LINE|L2|L2a	+	chr13	45333470	45341284	TPT1|NM_003295.3	-	45333470,45338659,45339496,45339993,45340711,45341041	45337388,45338776,45339602,45340184,45340785,45341284	0.909091
SK_MEL_5_nuclear_fraction	chr1	211366401	211366453	211366450	+	RAMPAGE_only	2	2	10	0.736947	3.169925	chr1	211366365	211366790	LINE|L2|L2c	-	chr1	211326832	211374785	MSTRG.4803.4	+	211326832,211353238,211354409,211356366,211359911,211360701,211361087,211365375,211371301,211372127	211326889,211353457,211354467,211356468,211360076,211360779,211361162,211369592,211371470,211374785	0.900000
SK_MEL_5_nuclear_fraction	chr17	80160376	80160438	80160376	+	High_confidence	4	4	34	2.505618	4.418201	chr17	80160337	80160418	LTR|ERV1|LTR49-int	-	chr17	80160735	80161330	MSTRG.25802.1	+	80160735	80161330	0.588235
SK_MEL_5_nuclear_fraction	chr14	40954486	40954548	40954547	+	High_confidence	14	21	101	7.443160	5.454028	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954592	40975517	MSTRG.16541.1	+	40954592,40962789,40974339	40954952,40962842,40975517	0.782178
SK_MEL_5_nuclear_fraction	chr8	99892041	99892057	99892056	-	RAMPAGE_only	7	7	20	1.473893	3.484184	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.950000
SK_MEL_5_nuclear_fraction	chr22	47631599	47631651	47631599	-	High_confidence	6	6	51	3.758427	4.600444	chr22	47631336	47631805	LTR|ERVL|MLT2B1	-	chr22	47621042	47631569	LINC00898|NR_033377.1	-	47621042,47622455,47624467,47627161,47627437,47629327	47621101,47622952,47625633,47627242,47627577,47631569	0.980392
SK_MEL_5_nuclear_fraction	chr12	44240424	44240469	44240457	+	High_confidence	117	122	385	28.372442	6.092087	chr12	44240183	44240504	LTR|ERVL-MaLR|MLT1J	-	chr12	44240460	44251038	MSTRG.12222.1	+	44240460,44242713	44242642,44251038	0.880519
SK_MEL_5_nuclear_fraction	chr7	107580245	107580267	107580264	+	High_confidence	1292	1299	5740	423.007324	7.637808	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.771080
SK_MEL_5_nuclear_fraction	chr14	50756882	50756949	50756882	-	RAMPAGE_only	3	3	17	1.252809	3.616875	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.823529
SK_MEL_5_nuclear_fraction	chr11	65430069	65430143	65430093	+	RAMPAGE_only	7	7	40	2.947786	4.826875	chr11	65430027	65430148	SINE|MIR|MIRb	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.950000
SK_MEL_5_nuclear_fraction	chr21	38121347	38121359	38121347	-	High_confidence	9	9	27	1.989756	4.032303	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	37623558	38121345	KCNJ6|ENST00000645093.1	-	37623558,37714210,37840657,38120306,38121127	37625484,37715131,37840709,38120408,38121345	0.629630
SK_MEL_5_nuclear_fraction	chr3	197960702	197960712	197960711	+	High_confidence	3	3	9	0.663252	2.500000	chr3	197960678	197960861	DNA|hAT-Charlie|MER5A	-	chr3	197960256	198038667	LMLN|ENST00000332636.5	+	197960256,197974376,197975041,197976028,197976597,197980325,197983942,197985795,197990558,197996174,197999265,198019252,198021445,198024657,198035832,198038566	197960319,197974474,197975072,197976111,197976715,197980504,197984048,197985890,197990676,197996282,197999342,198019385,198021605,198024788,198036043,198038667	0.777778
SK_MEL_5_nuclear_fraction	chr15	32910472	32910524	32910523	-	RAMPAGE_only	7	7	20	1.473893	3.584184	chr15	32910419	32910514	LINE|CR1|L3	-	chr15	32908158	32926261	FMN1|ENST00000558628.1	-	32908158,32910473,32926173	32908578,32910535,32926261	0.500000
SK_MEL_5_nuclear_fraction	chr7	119706107	119706268	119706220	-	RAMPAGE_only	20	21	129	9.506611	5.836291	chr7	119705200	119707009	LINE|L1|L1MCb	-	chr7	119699239	119713774	MSTRG.54298.7	-	119699239,119713665	119706671,119713774	0.976744
SK_MEL_5_nuclear_fraction	chr5	25963838	25963922	25963921	+	RAMPAGE_only	199	212	545	40.163587	6.675143	chr5	25963846	25964173	LTR|ERV1|MER65-int	+	chr5	25004472	25965237	MSTRG.45452.1	+	25004472,25963981	25004499,25965237	0.910092
SK_MEL_5_nuclear_fraction	chr5	27472283	27472304	27472283	+	High_confidence	5530	5914	16513	1216.919851	7.280624	chr5	27472073	27472487	LTR|ERV1|MER61C	+	chr5	27472291	27496280	MSTRG.45475.1	+	27472291,27475534	27472519,27496280	0.738872
SK_MEL_5_nuclear_fraction	chr1	194347919	194347920	194347919	+	High_confidence	289	322	400	29.477862	6.842667	chr1	194347724	194348076	LTR|ERVL-MaLR|THE1A	+	chr1	194347929	194354601	MSTRG.4510.2	+	194347929,194350924,194353768	194348000,194352654,194354601	0.720000
SK_MEL_5_nuclear_fraction	chr19	3062919	3062939	3062919	-	High_confidence	1	1	7	0.515863	2.584963	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.714286
SK_MEL_5_nuclear_fraction	chr11	7677221	7677311	7677246	-	High_confidence	40	105	284	20.929282	5.755867	chr11	7677065	7677444	LTR|ERVL-MaLR|THE1C	-	chr11	7665133	7677222	MSTRG.8478.7	-	7665133,7666450,7668477,7669624,7672450,7672747,7674225,7677147	7665546,7667813,7669334,7669731,7672523,7672891,7674493,7677222	0.718310
SK_MEL_5_nuclear_fraction	chr22	18149865	18149874	18149868	+	High_confidence	19	19	66	4.863847	4.315170	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.515152
SK_MEL_5_nuclear_fraction	chr3	185689870	185689884	185689883	-	High_confidence	15	15	25	1.842366	4.229871	chr3	185689686	185689988	SINE|Alu|AluYa5	+	chr3	185649402	185689238	IGF2BP2|ENST00000494906.1	-	185649402,185652093,185657285,185658340,185675295,185675790,185687056,185689107	185649534,185652168,185657402,185658409,185675431,185675913,185687191,185689238	0.680000
SK_MEL_5_nuclear_fraction	chr7	112458985	112459029	112459018	+	RAMPAGE_only	4	4	10	0.736947	2.641604	chr7	112459064	112459233	SINE|Alu|AluJo	+	chr7	112452057	112468104	MSTRG.54171.16	+	112452057,112455762,112456001,112456913,112458860,112462000,112462269	112452511,112455867,112456086,112457038,112461916,112462179,112468104	0.900000
SK_MEL_5_nuclear_fraction	chr5	160486272	160486671	160486272	+	High_confidence	11	11	245	18.055191	5.619512	chr5	160485738	160486417	LTR|ERVL|LTR84a	+	chr5	160485351	160491871	MSTRG.47977.4	+	160485351,160489894	160489794,160491871	1.000000
SK_MEL_5_nuclear_fraction	chr19	51886854	51886880	51886861	-	RAMPAGE_only	4	4	14	1.031725	3.378783	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51872549	51887920	ZNF577|ENST00000638348.1	-	51872549,51877281,51878388,51880322,51880678,51886820	51873706,51877377,51878515,51880401,51880877,51887920	0.857143
SK_MEL_5_nuclear_fraction	chr17	80160773	80160802	80160801	+	High_confidence	25	25	172	12.675481	5.714296	chr17	80160435	80160954	LTR|ERV1|LTR36	-	chr17	80160735	80161330	MSTRG.25802.1	+	80160735	80161330	0.982558
SK_MEL_5_nuclear_fraction	chr12	55956841	55957516	55957039	-	RAMPAGE_only	27	30	1028	75.758106	7.447707	chr12	55957026	55957083	LINE|L2|L2	+	chr12	55954275	55966018	MSTRG.12697.7	-	55954275,55955273,55955463,55955778,55956102,55957922,55958472,55961316,55961621,55965935	55954349,55955361,55955669,55955863,55957671,55958084,55958607,55961463,55961732,55966018	0.944553
SK_MEL_5_nuclear_fraction	chr1	225457454	225457490	225457489	-	RAMPAGE_only	2	2	7	0.515863	2.521641	chr1	225456763	225457522	LINE|L1|L1MA4	-	chr1	225447989	225465377	MSTRG.5107.4	-	225447989,225462393	225461729,225465377	0.857143
SK_MEL_5_nuclear_fraction	chr10	126663027	126663039	126663027	-	RAMPAGE_only	5	5	11	0.810641	2.921928	chr10	126662973	126663037	LINE|L2|L2b	+	chr10	126534403	126670446	MSTRG.8049.13	-	126534403,126608601,126646564,126656142,126670240	126534472,126608753,126646637,126663099,126670446	0.727273
SK_MEL_5_nuclear_fraction	chr2	105079078	105079085	105079078	+	RAMPAGE_only	3	4	11	0.810641	3.277613	chr2	105079115	105079251	LINE|L1|L1M5	+	chr2	105038064	105099900	MSTRG.32127.2	+	105038064,105049170,105071312,105071458,105079982,105088983,105089410,105092400,105093529,105097154,105099669	105038227,105049350,105071375,105071489,105080062,105089069,105089995,105092569,105093638,105097324,105099900	0.636364
SK_MEL_5_nuclear_fraction	chr9	114177922	114177932	114177931	+	High_confidence	3	3	7	0.515863	2.584963	chr9	114177859	114178092	LINE|L2|L2c	-	chr9	114177929	114246121	MSTRG.59521.5	+	114177929,114178290,114183021,114194403,114195958,114205101,114205758,114206251,114209674,114210981,114219790,114222222,114231078,114231821,114235598,114236980,114237661,114240219,114240433,114242186,114243506,114245865	114177976,114178344,114183075,114194457,114196012,114205146,114205812,114206296,114209728,114211026,114219844,114222267,114231132,114231858,114235652,114237034,114237715,114240273,114240487,114242231,114243560,114246121	0.714286
SK_MEL_5_nuclear_fraction	chr4	142631954	142631974	142631954	-	High_confidence	185	189	272	20.044946	5.497378	chr4	142631849	142632229	LTR|ERVL|LTR47B2	-	chr4	142628798	142631925	MSTRG.44431.1	-	142628798,142631908	142630162,142631925	0.720588
SK_MEL_5_nuclear_fraction	chr5	162036703	162036716	162036715	+	RAMPAGE_only	2	2	6	0.442168	2.584963	chr5	162030925	162036952	LINE|L1|L1PA2	-	chr5	162061578	162155515	GABRG2|ENST00000638660.1	+	162061578,162093827,162095494,162097637,162101234,162103888,162142163,162149107,162151729,162153092	162061909,162093979,162095562,162097858,162101317,162104026,162142316,162149313,162151753,162155515	0.833333
SK_MEL_5_nuclear_fraction	chr2	196527499	196527500	196527499	-	RAMPAGE_only	5	5	7	0.515863	2.521641	chr2	196521488	196527500	LINE|L1|L1PA2	-	chr2	196199336	196586729	HECW2|ENST00000644256.1	-	196199336,196215864,196217007,196220038,196220794,196222210,196225771,196228101,196240448,196242083,196253919,196257822,196271192,196274020,196278527,196292564,196306487,196307129,196307934,196317273,196318551,196320338,196322477,196324979,196329574,196334423,196343656,196433131,196586507	196201388,196215977,196217093,196220153,196220941,196222340,196225870,196228254,196240562,196242204,196254029,196257906,196271289,196274123,196278662,196292750,196306612,196307233,196308085,196317369,196319904,196320439,196322620,196325149,196329650,196334518,196343764,196433458,196586729	0.714286
SK_MEL_5_nuclear_fraction	chr19	47227183	47227214	47227213	-	High_confidence	3	3	11	0.810641	2.646439	chr19	47227045	47227213	SINE|MIR|MIR1_Amn	-	chr19	47221644	47227189	BBC3|ENST00000598636.1	-	47221644,47226563	47221918,47227189	0.818182
SK_MEL_5_nuclear_fraction	chr4	65241796	65241817	65241813	-	High_confidence	9	12	47	3.463649	4.942783	chr4	65241173	65242746	LTR|ERV1|MER52A	-	chr4	65225866	65241814	AC018683.1|ENST00000649562.1	-	65225866,65238383,65241181	65226010,65238464,65241814	0.851064
SK_MEL_5_nuclear_fraction	chr8	134830104	134830114	134830104	-	RAMPAGE_only	9	9	16	1.179114	3.327820	chr8	134830045	134830143	DNA|DNA|UCON8	+	chr8	134826428	134831414	MSTRG.57478.1	-	134826428	134831414	1.000000
SK_MEL_5_nuclear_fraction	chr7	30563894	30563905	30563894	-	High_confidence	11	11	39	2.874092	4.907072	chr7	30563654	30564076	LTR|ERVL-MaLR|MLT1C	-	chr7	30533241	30563998	MSTRG.52469.22	-	30533241,30550635,30552099,30561465,30562741	30533413,30550781,30552179,30562128,30563998	0.871795
SK_MEL_5_nuclear_fraction	chr1	247533826	247533840	247533839	-	High_confidence	9	9	19	1.400198	3.405822	chr1	247533249	247533882	LTR|ERV1|MER39B	+	chr1	247530131	247533839	OR2C3|NM_198074.4	-	247530131,247533506	247532540,247533839	0.631579
SK_MEL_5_nuclear_fraction	chr2	6918639	6918680	6918679	-	High_confidence	13	14	32	2.358229	4.476410	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6912275	6918682	RNF144A-AS1|NR_033997.1	-	6912275,6914192,6915822,6916849,6918401	6913664,6914350,6915967,6917224,6918682	0.562500
SK_MEL_5_nuclear_fraction	chr2	257429	257449	257429	-	RAMPAGE_only	2	2	7	0.515863	2.584963	chr2	257373	257786	LTR|ERV1|MER57A1	+	chr2	218143	264590	MSTRG.29982.4	-	218143,229965,231022,233100,234159,247537,249730,253004,256206	219001,230044,231191,233229,234272,247602,249844,253115,264590	0.857143
SK_MEL_5_nuclear_fraction	chr14	50754743	50754761	50754743	-	RAMPAGE_only	1	1	7	0.515863	2.584963	chr14	50754738	50754803	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.857143
SK_MEL_5_nuclear_fraction	chr5	19142319	19142342	19142319	-	High_confidence	23	23	51	3.758427	4.396566	chr5	19142064	19143334	LTR|ERV1|LTR12E	-	chr5	18965860	19142346	AC106744.1|ENST00000504827.1	-	18965860,19142057	18966231,19142346	0.549020
SK_MEL_5_nuclear_fraction	chr8	143281653	143281687	143281686	-	High_confidence	134	171	749	55.197297	5.397501	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143281069	143281665	MINCR|ENST00000524335.1	-	143281069,143281481	143281384,143281665	0.735648
SK_MEL_5_nuclear_fraction	chr6	95738498	95738533	95738532	-	High_confidence	4	4	8	0.589557	2.807355	chr6	95738462	95739252	LINE|L1|L1MB3	+	chr6	95737481	95738574	MSTRG.50332.1	-	95737481	95738574	0.875000
SK_MEL_5_nuclear_fraction	chr1	235781966	235781967	235781966	-	RAMPAGE_only	6	6	8	0.589557	2.750000	chr1	235781873	235781923	SINE|Alu|AluJr4	-	chr1	235709105	235803065	MSTRG.5399.7	-	235709105,235712056,235715200,235716711,235720660,235724027,235728075,235729595,235730846,235731031,235733502,235733829,235734482,235741421,235743978,235746335,235751209,235752004,235753043,235755477,235757280,235758971,235759166,235762719,235766078,235770159,235773841,235774912,235777062,235780864,235781926,235787199,235788700,235791698,235793502,235800319,235800870,235802907	235709308,235713176,235715357,235716778,235720905,235724180,235728131,235729657,235730943,235731177,235733691,235733906,235738594,235741628,235744157,235746527,235751362,235752171,235753274,235755647,235757458,235759142,235759599,235762851,235766277,235770297,235773991,235775086,235777308,235781055,235782087,235787373,235788845,235792125,235793612,235800386,235801097,235803065	1.000000
SK_MEL_5_nuclear_fraction	chr12	64034272	64034329	64034272	+	RAMPAGE_only	96	98	559	41.195313	5.691891	chr12	64034075	64034470	LTR|ERVL-MaLR|MSTA	+	chr12	64042793	64043627	SRGAP1|ENST00000542381.1	+	64042793,64043446	64042972,64043627	0.713775
SK_MEL_5_nuclear_fraction	chr6	136225617	136225623	136225622	-	High_confidence	34	50	93	6.853603	5.783441	chr6	136225478	136225763	LTR|ERVL-MaLR|THE1B	-	chr6	136094714	136225595	AL138828.1|ENST00000417643.5	-	136094714,136095715,136095993,136096119,136110995,136117069,136162251,136225537	136094779,136095825,136096019,136096288,136111101,136117172,136162348,136225595	0.655914
SK_MEL_5_nuclear_fraction	chr12	122064308	122064376	122064375	+	High_confidence	120	125	623	45.911771	6.279473	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122064356	122070504	MSTRG.14063.3	+	122064356,122067197,122069015	122067144,122067741,122070504	0.802568
SK_MEL_5_nuclear_fraction	chr12	70468078	70468081	70468078	+	High_confidence	10	10	20	1.473893	3.884184	chr12	70467961	70468294	LTR|ERV1|MER61A	+	chr12	70468109	70511222	AC025569.1|ENST00000548924.5	+	70468109,70507894,70510211,70510407,70511074	70468327,70508001,70510284,70510577,70511222	0.550000
SK_MEL_5_nuclear_fraction	chr13	114242844	114242915	114242844	+	RAMPAGE_only	4	4	29	2.137145	3.974890	chr13	114242779	114243005	DNA|hAT-Charlie|MER20	+	chr13	114235080	114262979	MSTRG.16005.8	+	114235080,114236644,114236798,114238989,114239349,114242120,114243855,114244889,114245999,114246930,114250548,114257077,114259334,114261886,114262878	114235132,114236699,114236896,114239028,114239490,114243348,114243989,114244969,114246049,114247004,114250674,114257230,114259398,114261948,114262979	0.896552
SK_MEL_5_nuclear_fraction	chr2	230961303	230961333	230961303	-	High_confidence	4	4	15	1.105420	3.640224	chr2	230961270	230961508	LTR|ERVL-MaLR|MLT1C	-	chr2	230909865	230961066	GPR55|ENST00000392039.2	-	230909865,230960774	230911096,230961066	0.600000
SK_MEL_5_nuclear_fraction	chr1	12573232	12573246	12573232	-	RAMPAGE_only	2	2	7	0.515863	2.521641	chr1	12573183	12573549	LINE|L2|L2b	+	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	1.000000
SK_MEL_5_nuclear_fraction	chr3	122745573	122745591	122745590	-	RAMPAGE_only	8	8	41	3.021481	4.256058	chr3	122745410	122746106	DNA|TcMar-Tigger|MER44C	+	chr3	122740002	122741776	HSPBAP1|ENST00000471534.1	-	122740002,122741002	122740875,122741776	0.853659
SK_MEL_5_nuclear_fraction	chr13	46467835	46467872	46467835	-	High_confidence	22	23	110	8.106412	5.656792	chr13	46467669	46468268	LTR|ERV1|HERVE-int	+	chr13	46455137	46467836	LINC01198|ENST00000650465.1	-	46455137,46457839,46460944,46464674,46465842,46466608,46467738	46455511,46457913,46461085,46464819,46465987,46466709,46467836	0.772727
SK_MEL_5_nuclear_fraction	chr12	55716632	55716636	55716632	+	High_confidence	4	4	12	0.884336	2.913977	chr12	55716643	55716820	SINE|MIR|MIR3	+	chr12	55716530	55719703	BLOC1S1|ENST00000548556.1	+	55716530,55719090,55719498	55716717,55719223,55719703	0.666667
SK_MEL_5_nuclear_fraction	chr15	81331882	81331893	81331892	+	High_confidence	35	36	61	4.495374	4.999801	chr15	81331558	81332203	LTR|ERV1|MER50	+	chr15	81331910	81516976	TMC3-AS1|ENST00000560851.2	+	81331910,81332344,81341561,81358335,81361918,81380208,81516502	81332023,81332541,81341708,81358503,81362036,81380260,81516976	0.655738
SK_MEL_5_nuclear_fraction	chr19	5680234	5680249	5680234	-	High_confidence	6	6	23	1.694977	4.070656	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.695652
SK_MEL_5_nuclear_fraction	chr11	26597604	26597639	26597604	-	High_confidence	15	18	41	3.021481	3.895715	chr11	26597150	26597675	LTR|ERV1|LTR17	-	chr11	26579763	26597602	MSTRG.8809.2	-	26579763,26597118	26591973,26597602	0.878049
SK_MEL_5_nuclear_fraction	chr8	93795738	93795761	93795738	+	High_confidence	3	3	14	1.031725	3.546594	chr8	93795732	93795826	SINE|Alu|FLAM_A	+	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.714286
SK_MEL_5_nuclear_fraction	chr7	119701650	119701844	119701690	-	RAMPAGE_only	26	27	178	13.117649	5.829023	chr7	119701416	119701850	LTR|ERVL-MaLR|MLT1C	-	chr7	119698873	119713774	MSTRG.54298.6	-	119698873,119713665	119704972,119713774	0.977528
SK_MEL_5_nuclear_fraction	chr7	30563253	30563254	30563253	+	High_confidence	43	44	48	3.537343	5.214163	chr7	30563019	30563431	LINE|CR1|L3	+	chr7	30563015	30583349	MSTRG.52480.4	+	30563015,30568661,30577722	30563498,30568701,30583349	0.729167
SK_MEL_5_nuclear_fraction	chr7	95412777	95412841	95412809	-	RAMPAGE_only	7	7	34	2.505618	4.160705	chr7	95412790	95412835	LINE|L2|L2a	+	chr7	95411650	95434951	PON2|ENST00000491069.5	-	95411650,95412311,95416171,95424514,95434877	95411779,95412477,95416297,95424585,95434951	0.676471
SK_MEL_5_nuclear_fraction	chr4	84299199	84299271	84299270	-	High_confidence	18	20	114	8.401191	5.898885	chr4	84298780	84304810	LINE|L1|L1PA2	+	chr4	83968081	84299246	MSTRG.43622.2	-	83968081,84012054,84148046,84149218,84243110,84284205,84286668,84293219,84299123	83970110,84012119,84148130,84149256,84243216,84284326,84286827,84293409,84299246	0.596491
SK_MEL_5_nuclear_fraction	chr8	3183046	3183088	3183077	-	High_confidence	74	78	447	32.941511	5.670625	chr8	3182937	3183057	SINE|Alu|AluY	-	chr8	2935366	3183146	MSTRG.55184.3	-	2935366,2942471,2949298,2950230,2951113,2954223,2955588,2957695,2961140,2962465,2963221,2965774,2966569,2973116,2974450,2978611,2998010,2999957,3018476,3029318,3052461,3087096,3091515,3096848,3106527,3107717,3108602,3110157,3118398,3142464,3151396,3157896,3162158,3181109,3182990	2938744,2942604,2949386,2950343,2951275,2954268,2955768,2957807,2961214,2962639,2963395,2965954,2966746,2973299,2974624,2978800,2998184,3000131,3018650,3029513,3052647,3087285,3091662,3097037,3106641,3107798,3108748,3110335,3118587,3142674,3151513,3157966,3162277,3181214,3183146	0.939597
SK_MEL_5_nuclear_fraction	chr11	90619994	90620118	90620042	+	High_confidence	15	15	85	6.264046	5.310755	chr11	90619930	90625234	LINE|L1|L1PA13	+	chr11	90620159	90621071	MSTRG.10416.1	+	90620159	90621071	0.988235
SK_MEL_5_nuclear_fraction	chrX	21770850	21770883	21770882	-	High_confidence	5	6	25	1.842366	4.563856	chrX	21770311	21772190	LINE|L1|L1PB1	+	chrX	21705971	21770868	MSTRG.60701.2	-	21705971,21737548,21743749,21754245,21757941,21765564	21706394,21737697,21743836,21754302,21761942,21770868	1.000000
SK_MEL_5_nuclear_fraction	chr8	89609979	89610124	89610119	-	RAMPAGE_only	7	7	73	5.379710	5.282089	chr8	89609865	89610173	SINE|Alu|AluJr	+	chr8	89585848	89616332	MSTRG.56772.5	-	89585848,89596418,89615182,89616230	89588050,89611989,89615305,89616332	1.000000
SK_MEL_5_nuclear_fraction	chr2	74917992	74918071	74918040	+	High_confidence	196	202	452	33.309984	7.063637	chr2	74917679	74918502	LINE|L2|L2a	-	chr2	74918147	74942670	MSTRG.31572.1	+	74918147,74931417,74932660,74938307	74918459,74931536,74932790,74942670	0.767699
SK_MEL_5_nuclear_fraction	chr14	35135112	35135157	35135156	+	RAMPAGE_only	4	4	11	0.810641	3.277613	chr14	35134389	35135381	LINE|L1|L1M1	-	chr14	35122758	35273485	KIAA0391|ENST00000557404.3	+	35122758,35127478,35180669,35266726,35270400,35273434	35122910,35127611,35180777,35266875,35270596,35273485	0.818182
SK_MEL_5_nuclear_fraction	chrX	135893604	135893722	135893714	+	High_confidence	154	206	1136	83.717129	7.114528	chrX	135893573	135893804	LTR|ERVL|LTR41	-	chrX	135893633	135913061	SAGE1|NM_018666.2	+	135893633,135896242,135901558,135904476,135905251,135906023,135906410,135906925,135907312,135907700,135908088,135908476,135908863,135909638,135910029,135910414,135911191,135911578,135912320,135912797	135893800,135896329,135901691,135904569,135905392,135906164,135906551,135907066,135907453,135907841,135908229,135908617,135909004,135909779,135910170,135910555,135911332,135911953,135912414,135913061	0.768486
SK_MEL_5_nuclear_fraction	chr3	46558567	46558579	46558567	+	RAMPAGE_only	2	2	8	0.589557	2.750000	chr3	46558357	46558849	LINE|L1|L1MEf	-	chr3	46557397	46559688	LRRC2-AS1|ENST00000599511.1	+	46557397	46559688	0.875000
SK_MEL_5_nuclear_fraction	chr6	137869062	137869082	137869074	+	RAMPAGE_only	2	2	8	0.589557	2.521641	chr6	137869100	137869213	SINE|MIR|MIR3	+	chr6	137867581	137881198	MSTRG.51168.6	+	137867581,137871212,137874844,137875687,137875995,137877075,137878431,137880070,137881034	137871108,137871522,137875035,137875835,137876166,137877256,137879351,137880252,137881198	0.875000
SK_MEL_5_nuclear_fraction	chr2	37366811	37366816	37366811	+	High_confidence	4	4	11	0.810641	2.846439	chr2	37366583	37366947	LTR|ERVL|LTR16A	-	chr2	37367122	37373030	QPCT|ENST00000469098.1	+	37367122,37369684,37372355,37372681	37367408,37369784,37372472,37373030	0.818182
SK_MEL_5_nuclear_fraction	chr7	104770600	104770654	104770653	-	RAMPAGE_only	4	5	18	1.326504	3.350209	chr7	104770607	104770791	DNA|hAT-Charlie|MER117	-	chr7	104768668	104804084	MSTRG.53976.7	-	104768668,104785219,104785730,104802838,104803955	104779346,104785378,104800069,104802963,104804084	1.000000
SK_MEL_5_nuclear_fraction	chr11	123061174	123061297	123061277	-	High_confidence	13	13	95	7.000992	5.661395	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.831579
SK_MEL_5_nuclear_fraction	chr12	121346174	121346199	121346198	-	RAMPAGE_only	4	4	9	0.663252	2.500000	chr12	121346155	121346445	LINE|L2|L2a	+	chr12	121335516	121347875	ANAPC5|ENST00000541652.5	-	121335516,121337290,121342002,121345838,121346895,121347801	121335723,121337392,121342069,121346031,121347005,121347875	0.888889
SK_MEL_5_nuclear_fraction	chr14	81170385	81170423	81170413	-	High_confidence	22	39	148	10.906809	6.041436	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.777027
SK_MEL_5_nuclear_fraction	chr14	81166243	81166254	81166251	-	RAMPAGE_only	24	25	55	4.053206	5.056021	chr14	81166191	81166439	LTR|ERVL-MaLR|MLT1J2	+	chr14	81012098	81170224	AC007262.2|ENST00000646052.1	-	81012098,81053682,81087466,81093581,81094214,81099398,81165192,81170108	81014404,81053816,81087652,81093737,81094324,81099526,81165381,81170224	0.690909
SK_MEL_5_nuclear_fraction	chr12	28788820	28788861	28788820	-	RAMPAGE_only	2	3	12	0.884336	3.084963	chr12	28788171	28788947	LINE|L1|L1MA3	+	chr12	28785953	28794936	MSTRG.12054.7	-	28785953,28791601,28794303	28791563,28793745,28794936	1.000000
SK_MEL_5_nuclear_fraction	chr6	134448097	134448127	134448097	-	RAMPAGE_only	3	3	16	1.179114	2.732915	chr6	134448041	134448603	LINE|L1|L1MB7	+	chr6	134447429	134454581	AL078590.2|ENST00000422736.1	-	134447429,134447933,134454452	134447800,134448001,134454581	0.750000
SK_MEL_5_nuclear_fraction	chr9	120440536	120440563	120440562	-	RAMPAGE_only	5	5	15	1.105420	3.373557	chr9	120440377	120440583	LINE|L2|L2c	+	chr9	120389195	120536437	MSTRG.59589.5	-	120389195,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120447894,120453455,120458449,120460571,120467859,120470110,120471747,120475205,120487293,120491306,120518426,120524985,120527805,120528743,120529977,120536371	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120443742,120448126,120453873,120458622,120460667,120467997,120470220,120475106,120477450,120487437,120491477,120518645,120525078,120527925,120528797,120530140,120536437	1.000000
SK_MEL_5_nuclear_fraction	chr7	92461162	92461209	92461208	+	RAMPAGE_only	4	4	28	2.063450	4.351823	chr7	92461138	92461486	LTR|ERVL|MLT2F	+	chr7	92457563	92491610	AC007566.1|ENST00000427458.1	+	92457563,92461318,92462957,92465101,92491242	92457589,92461410,92463026,92465189,92491610	0.500000
SK_MEL_5_nuclear_fraction	chr11	125874657	125874681	125874678	-	High_confidence	2	2	9	0.663252	2.750000	chr11	125874041	125875038	LTR|ERV1|HUERS-P3-int	+	chr11	125873448	125874528	AP000842.3|ENST00000569238.1	-	125873448	125874528	0.666667
SK_MEL_5_nuclear_fraction	chr12	129109673	129109674	129109673	+	High_confidence	51	55	64	4.716458	5.227642	chr12	129109479	129109833	LTR|ERVL-MaLR|THE1A	+	chr12	129109689	129113298	LOC283352|NR_104172.1	+	129109689,129110992,129111419,129113064	129109757,129111139,129111515,129113298	0.531250
SK_MEL_5_nuclear_fraction	chr7	104779269	104779354	104779301	-	RAMPAGE_only	19	19	100	7.369466	4.986630	chr7	104779292	104779381	LINE|L2|L2c	+	chr7	104768668	104804084	MSTRG.53976.7	-	104768668,104785219,104785730,104802838,104803955	104779346,104785378,104800069,104802963,104804084	1.000000
SK_MEL_5_nuclear_fraction	chr20	35713218	35713243	35713218	-	High_confidence	2	2	8	0.589557	2.500000	chr20	35713201	35713317	SINE|Alu|AluJb	+	chr20	35704325	35713203	RBM39|ENST00000495293.5	-	35704325,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709274,35713203	0.750000
SK_MEL_5_nuclear_fraction	chr8	89597443	89597527	89597520	-	RAMPAGE_only	6	6	28	2.063450	4.182006	chr8	89596705	89597862	LINE|L1|L1PA3	-	chr8	89584950	89611889	MSTRG.56772.4	-	89584950,89596418,89596933,89611433	89588050,89596512,89609494,89611889	0.642857
SK_MEL_5_nuclear_fraction	chrX	15492635	15492640	15492635	-	High_confidence	38	42	73	5.379710	5.165227	chrX	15492554	15492724	SINE|MIR|MIR	+	chrX	15384798	15493288	MSTRG.60601.3	-	15384798,15390184,15397448,15407505,15425905,15455847,15459656,15479728,15491161,15491734	15385116,15390251,15397531,15407550,15425990,15456054,15459740,15479821,15491309,15493288	0.931507
SK_MEL_5_nuclear_fraction	chr16	69775321	69775324	69775321	+	High_confidence	5	5	12	0.884336	2.594907	chr16	69774996	69775424	LTR|ERV1|MER39	-	chr16	69776186	69910250	WWP2|ENST00000569174.5	+	69776186,69786995,69798681,69799173,69840125,69842023,69871803,69888038,69908760	69776241,69787080,69798829,69799295,69840263,69842120,69871931,69888249,69910250	0.500000
SK_MEL_5_nuclear_fraction	chr6	125843211	125843224	125843211	+	High_confidence	3	3	14	1.031725	3.546594	chr6	125843025	125843465	LTR|ERVL-MaLR|MLT1D	+	chr6	125843309	125931111	MSTRG.50856.9	+	125843309,125855019,125874888,125878262,125881089,125882425,125885158,125888938,125890641,125915332,125920942,125922681,125927662,125928173,125928635	125843357,125855240,125874968,125878370,125881203,125882551,125885343,125889981,125890810,125915480,125921068,125922834,125927758,125928247,125931111	0.714286
SK_MEL_5_nuclear_fraction	chr20	5010312	5010313	5010312	-	High_confidence	776	784	874	64.409129	7.170067	chr20	5010113	5010529	LTR|ERVL|MLT2B2	-	chr20	4852355	5010293	SLC23A2|ENST00000379333.5	-	4852355,4859288,4861947,4862777,4867769,4869905,4873935,4874575,4883641,4884752,4885820,4899554,4902441,4912879,4932454,4970792,5010181	4857204,4859384,4862085,4862907,4867875,4870053,4874092,4874696,4883823,4884823,4885909,4899712,4902558,4912978,4932716,4970919,5010293	0.759725
SK_MEL_5_nuclear_fraction	chr8	87175645	87175678	87175677	+	RAMPAGE_only	4	4	12	0.884336	3.277613	chr8	87174257	87176299	LINE|L1|L1MA2	-	chr8	87205993	87353876	CNBD1|ENST00000620844.1	+	87205993,87236918,87284677,87286538,87351684,87353635,87353871	87206138,87237112,87284815,87286671,87351794,87353786,87353876	0.666667
SK_MEL_5_nuclear_fraction	chr11	93735039	93735085	93735054	-	High_confidence	3	4	17	1.252809	3.202820	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730353	93735238	TAF1D|ENST00000529435.5	-	93730353,93730676,93731149,93731752,93732243,93733086,93733349,93734624	93730447,93730712,93731216,93731799,93732291,93733121,93733419,93735238	0.882353
SK_MEL_5_nuclear_fraction	chr22	39320287	39320392	39320328	-	High_confidence	14	19	75	5.527099	5.308558	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.906667
SK_MEL_5_nuclear_fraction	chr16	72616043	72616068	72616067	-	RAMPAGE_only	7	8	23	1.694977	4.011365	chr16	72615908	72616246	LTR|ERVL-MaLR|THE1B	-	chr16	72373846	72664989	MSTRG.22506.3	-	72373846,72391070,72423832,72425550,72479682,72522552,72523331,72540577,72555264,72570434,72664891	72373911,72391215,72424066,72427457,72479790,72522623,72523415,72540611,72555326,72570515,72664989	0.565217
SK_MEL_5_nuclear_fraction	chr3	70012463	70012486	70012467	+	RAMPAGE_only	4	4	9	0.663252	2.500000	chr3	70012207	70012665	LTR|ERVL-MaLR|MLT1D	+	chr3	69999606	70072666	SAMMSON|ENST00000641601.1	+	69999606,70012356,70013519,70071475	69999867,70012598,70013672,70072666	0.666667
SK_MEL_5_nuclear_fraction	chr1	31707823	31707850	31707849	-	RAMPAGE_only	6	6	26	1.916061	4.213661	chr1	31707709	31708117	LINE|L2|L2a	+	chr1	31652246	31704319	COL16A1|ENST00000373672.7	-	31652246,31653598,31653866,31654791,31655313,31656399,31657032,31658487,31658913,31660584,31661065,31661413,31661659,31662333,31662586,31665171,31665582,31665881,31666036,31667574,31668164,31668801,31670601,31671614,31672415,31672595,31672723,31675006,31675257,31679631,31679803,31680041,31680904,31681022,31682933,31683193,31683333,31683706,31683949,31684108,31684522,31684820,31685638,31686090,31686243,31688466,31688860,31689049,31689740,31690366,31690528,31691187,31691416,31691597,31692004,31692473,31692597,31692766,31693091,31694143,31695185,31695760,31696087,31696962,31697219,31697905,31698482,31699812,31700040,31702120,31703836	31652853,31653676,31654043,31654858,31655502,31656444,31657068,31658577,31658964,31660638,31661119,31661458,31661704,31662387,31662658,31665234,31665618,31665935,31666081,31667628,31668218,31668855,31670646,31671659,31672502,31672637,31672840,31675039,31675311,31679685,31679851,31680101,31680931,31681067,31683002,31683247,31683369,31683748,31684003,31684231,31684630,31684856,31685770,31686135,31686279,31688502,31688971,31689085,31689851,31690393,31690573,31691226,31691512,31691642,31692067,31692509,31692642,31692808,31693154,31694170,31695221,31695787,31696141,31697088,31697300,31698172,31698606,31699930,31700115,31702227,31704319	0.576923
SK_MEL_5_nuclear_fraction	chr8	143018280	143018327	143018296	-	High_confidence	6	6	21	1.547588	3.431624	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.904762
SK_MEL_5_nuclear_fraction	chrX	103684703	103684718	103684703	-	RAMPAGE_only	4	4	8	0.589557	2.807355	chrX	103684643	103684884	SINE|MIR|MIR	-	chrX	103675504	103686668	MORF4L2|ENST00000441076.6	-	103675504,103678498,103685170,103686630	103677051,103678651,103685260,103686668	0.750000
SK_MEL_5_nuclear_fraction	chr15	66501587	66501602	66501587	-	High_confidence	2	3	8	0.589557	2.521641	chr15	66501554	66501711	SINE|MIR|MIR	-	chr15	66500130	66501381	RPL4|ENST00000563473.1	-	66500130,66500292,66500948,66501193	66500176,66500376,66501105,66501381	0.750000
SK_MEL_5_nuclear_fraction	chr1	20775700	20775784	20775770	-	RAMPAGE_only	4	4	30	2.210840	3.310350	chr1	20775005	20775936	DNA|TcMar-Tigger|Tigger3b	+	chr1	20775449	20780541	HP1BP3|ENST00000487117.1	-	20775449,20779811,20780344	20776750,20779911,20780541	0.733333
SK_MEL_5_nuclear_fraction	chr12	110172568	110172707	110172609	+	High_confidence	11	13	103	7.590550	5.384180	chr12	110172360	110173979	Retroposon|SVA|SVA_D	+	chr12	110171894	110218560	MSTRG.13751.8	+	110171894,110172579,110180421,110190919,110192616,110203863,110205442,110205594,110209170,110218043	110172086,110173031,110180571,110191048,110192706,110203950,110205514,110205680,110209216,110218560	1.000000
SK_MEL_5_nuclear_fraction	chr11	90861111	90861166	90861111	+	RAMPAGE_only	3	3	17	1.252809	3.625000	chr11	90860912	90861612	LINE|L1|L1ME1	+	chr11	90626627	90874120	MSTRG.10407.7	+	90626627,90844879,90852615,90854969	90629324,90844957,90852707,90874120	0.941176
SK_MEL_5_nuclear_fraction	chr7	100349884	100349885	100349884	+	RAMPAGE_only	8	8	10	0.736947	3.121928	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336124	100351900	MSTRG.53807.7	+	100336124,100336300,100338178,100338772,100345864,100349716,100351251	100336220,100336337,100338264,100338889,100345968,100349887,100351900	0.900000
SK_MEL_5_nuclear_fraction	chr12	26919049	26919072	26919071	-	RAMPAGE_only	26	42	96	7.074687	4.444723	chr12	26918889	26919198	SINE|Alu|AluJr	+	chr12	26905184	26938326	MSTRG.11920.4	-	26905184,26906301,26911177,26913456,26913973,26914407,26916001,26917351,26917643,26924354,26925760,26928204,26928702,26934555,26936578,26938267	26905536,26906437,26911317,26913687,26914128,26914532,26916180,26917441,26922700,26924483,26925851,26928285,26928905,26934630,26936814,26938326	0.968750
SK_MEL_5_nuclear_fraction	chr5	22638943	22638967	22638966	-	RAMPAGE_only	68	68	183	13.486122	6.455401	chr5	22638791	22639080	SINE|Alu|AluY	+	chr5	21750672	22853341	CDH12|ENST00000504376.6	-	21750672,21755590,21760557,21764977,21783357,21802166,21816944,21842160,21854670,21975090,22078445,22212497,22505269,22853057	21752236,21755842,21760675,21765099,21783494,21802420,21817132,21842328,21854790,21975385,22078862,22212643,22505364,22853341	0.535519
SK_MEL_5_nuclear_fraction	chr15	65244454	65244455	65244454	-	RAMPAGE_only	13	14	19	1.400198	3.794653	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.631579
SK_MEL_5_nuclear_fraction	chr7	141986113	141986115	141986114	-	High_confidence	29	36	46	3.389954	4.735200	chr7	141980085	141986114	LINE|L1|L1PA3	-	chr7	141985229	141986115	MSTRG.54784.1	-	141985229	141986115	0.608696
SK_MEL_5_nuclear_fraction	chr7	104786487	104786542	104786487	-	RAMPAGE_only	5	6	43	3.168870	4.833014	chr7	104786344	104786488	SINE|MIR|MIR	+	chr7	104768668	104804084	MSTRG.53976.6	-	104768668,104785219,104802838,104803955	104769016,104800069,104802963,104804084	1.000000
SK_MEL_5_nuclear_fraction	chrX	94567042	94567063	94567042	-	RAMPAGE_only	2	2	8	0.589557	2.521641	chrX	94566695	94568758	LINE|L1|L1M1	-	chrX	94565738	94600266	MSTRG.61572.1	-	94565738,94600106	94570146,94600266	0.750000
SK_MEL_5_nuclear_fraction	chr7	5067632	5067645	5067644	+	RAMPAGE_only	4	6	11	0.810641	2.921928	chr7	5067527	5067865	LINE|L1|L1ME3A	+	chr7	5045921	5069488	RBAK|ENST00000396912.1	+	5045921,5048032,5057294,5057683,5063694	5046396,5048091,5057421,5057779,5069488	0.909091
SK_MEL_5_nuclear_fraction	chr7	66493338	66493356	66493338	-	High_confidence	2	2	7	0.515863	2.521641	chr7	66493311	66493384	SINE|Alu|AluJr	-	chr7	66423147	66493355	MSTRG.53096.10	-	66423147,66427109,66427948,66429678,66429883,66439134,66450070,66467681,66476258,66479008,66480393,66481540,66485094,66487948,66489937,66491030	66423878,66427157,66428040,66429757,66430017,66439304,66450236,66467719,66476327,66479096,66480448,66481599,66485153,66488038,66490107,66493355	1.000000
SK_MEL_5_nuclear_fraction	chr1	116390278	116390299	116390278	+	RAMPAGE_only	1	1	7	0.515863	2.584963	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.571429
SK_MEL_5_nuclear_fraction	chr1	1655395	1655410	1655409	-	RAMPAGE_only	3	3	6	0.442168	2.584963	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635737	1658972	MSTRG.206.3	-	1635737,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1645262,1649637,1652566,1655484,1657498,1658972	1.000000
SK_MEL_5_nuclear_fraction	chr10	58320613	58320614	58320613	+	High_confidence	7	7	10	0.736947	2.646439	chr10	58320259	58320667	LTR|ERVL-MaLR|MSTC	-	chr10	58321307	58323723	MSTRG.6638.1	+	58321307	58323723	0.500000
SK_MEL_5_nuclear_fraction	chr6	13294645	13294669	13294660	-	High_confidence	2	2	8	0.589557	2.521641	chr6	13294417	13294626	SINE|MIR|MIR	-	chr6	13279294	13295586	MSTRG.48665.7	-	13279294,13281428,13283343,13284391	13281156,13281553,13283551,13295586	0.875000
SK_MEL_5_nuclear_fraction	chr15	55270887	55270933	55270921	-	High_confidence	173	211	848	62.493068	6.515164	chr15	55270754	55271222	LINE|L2|L2	+	chr15	55202965	55270909	RAB27A|NM_183236.2	-	55202965,55223888,55228608,55230400,55234781,55270164,55270858	55205705,55224012,55228712,55230486,55234956,55270284,55270909	0.652123
SK_MEL_5_nuclear_fraction	chr7	30623323	30623394	30623379	+	RAMPAGE_only	6	6	29	2.137145	4.458591	chr7	30623137	30623999	LINE|L1|L1MEf	+	chr7	30594883	30634033	MSTRG.52482.6	+	30594883,30598795,30599946,30601058,30603033,30603495,30612095,30614243,30615895,30617113,30621392,30622316,30628559,30631447,30632246,30633734	30595143,30598897,30600049,30601200,30603122,30609730,30612245,30614285,30616058,30617278,30621500,30626319,30628669,30631541,30632437,30634033	0.931034
SK_MEL_5_nuclear_fraction	chr6	13294587	13294616	13294587	-	High_confidence	4	5	14	1.031725	3.026987	chr6	13294417	13294626	SINE|MIR|MIR	-	chr6	13279294	13295586	MSTRG.48665.7	-	13279294,13281428,13283343,13284391	13281156,13281553,13283551,13295586	0.928571
SK_MEL_5_nuclear_fraction	chr17	72613563	72613637	72613572	+	High_confidence	10	10	50	3.684733	4.625815	chr17	72613266	72613701	LTR|ERVL|LTR33	-	chr17	72613391	72636610	MSTRG.25507.1	+	72613391,72618255,72622852,72631161,72634561,72635210	72613711,72618463,72629981,72631309,72634703,72636610	0.520000
SK_MEL_5_nuclear_fraction	chr2	165825444	165825480	165825479	-	High_confidence	5	5	10	0.736947	2.725481	chr2	165825012	165825620	LINE|L1|HAL1	-	chr2	165824921	165825147	MSTRG.33032.1	-	165824921	165825147	0.600000
SK_MEL_5_nuclear_fraction	chrX	18871385	18871393	18871391	+	High_confidence	47	58	92	6.779908	5.142067	chrX	18871222	18871559	LTR|ERVL-MaLR|THE1B	+	chrX	18871401	18894335	MSTRG.60660.1	+	18871401,18887522,18890117,18892764,18894146	18871476,18887625,18890628,18893338,18894335	0.663043
SK_MEL_5_nuclear_fraction	chr11	89292348	89292403	89292348	+	RAMPAGE_only	2	2	13	0.958031	3.251629	chr11	89292242	89292410	LINE|L2|L2b	-	chr11	89177892	89295759	MSTRG.10372.7	+	89177892,89191201,89227822,89284772,89292217	89178772,89191418,89227970,89291161,89295759	0.923077
SK_MEL_5_nuclear_fraction	chr15	51766026	51766039	51766038	+	High_confidence	3	4	6	0.442168	2.584963	chr15	51766001	51766248	SINE|MIR|MIRc	+	chr15	51766311	51816365	MSTRG.19157.5	+	51766311,51768261,51773711,51776931,51798196,51806376,51808419	51767152,51768418,51773834,51777018,51798340,51806521,51816365	0.833333
SK_MEL_5_nuclear_fraction	chr12	94706495	94706498	94706497	-	High_confidence	35	53	57	4.200595	4.724288	chr12	94706338	94706693	LTR|ERVL-MaLR|THE1B	-	chr12	94703896	94706486	MSTRG.13367.1	-	94703896,94706421	94704609,94706486	0.596491
SK_MEL_5_nuclear_fraction	chr17	79960660	79960742	79960740	-	High_confidence	37	78	344	25.350962	5.949372	chr17	79960476	79960790	SINE|Alu|AluSx	+	chr17	79932345	79960730	MSTRG.25795.2	-	79932345,79942059,79948871,79949716,79950410,79951449,79952656,79954531	79941107,79947831,79949006,79949865,79950578,79951597,79952818,79960730	0.994186
SK_MEL_5_nuclear_fraction	chr9	39809852	39809879	39809858	-	High_confidence	4	9	24	1.768672	3.708132	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.708333
SK_MEL_5_nuclear_fraction	chr14	102235213	102235224	102235223	-	High_confidence	7	13	20	1.473893	3.484184	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102229432	102235063	MOK|ENST00000522537.5	-	102229432,102232534,102233687,102234956	102229657,102232708,102233789,102235063	0.750000
SK_MEL_5_nuclear_fraction	chr17	35432499	35432585	35432533	-	High_confidence	6	6	28	2.063450	4.085055	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.821429
SK_MEL_5_nuclear_fraction	chr2	43552979	43552993	43552987	-	RAMPAGE_only	4	4	15	1.105420	3.640224	chr2	43552671	43553265	LINE|L1|L1MB8	-	chr2	43230850	43570515	THADA|ENST00000407351.5	-	43230850,43232712,43279764,43286907,43291695,43292103,43292833,43320445,43344121,43397970,43485233,43498832,43505621,43508647,43527878,43541158,43549209,43551788,43552203,43556344,43560233,43566697,43570387	43231343,43232882,43279896,43287061,43291768,43292222,43293213,43320540,43344237,43398139,43485325,43498955,43505735,43508780,43527988,43541316,43549368,43551925,43552339,43556555,43560385,43566821,43570515	0.533333
SK_MEL_5_nuclear_fraction	chr7	12497207	12497211	12497210	+	High_confidence	12	13	20	1.473893	4.037401	chr7	12497211	12500000	LINE|L1|L1HS	+	chr7	12496428	12541135	LOC102725191|NR_136261.1	+	12496428,12525819,12528901,12531012,12538309,12540919	12496639,12525904,12529044,12531092,12538456,12541135	0.550000
SK_MEL_5_nuclear_fraction	chr11	89290710	89290782	89290781	+	RAMPAGE_only	6	6	24	1.768672	4.186704	chr11	89290647	89290790	LTR|ERVL-MaLR|MLT1J	-	chr11	89177892	89295759	MSTRG.10372.5	+	89177892,89179314,89191201,89227822,89284772	89178772,89179385,89191418,89227970,89295759	0.916667
SK_MEL_5_nuclear_fraction	chr7	48155013	48155056	48155053	+	RAMPAGE_only	2	2	9	0.663252	2.750000	chr7	48154824	48155256	LINE|L1|L1MEf	-	chr7	48171457	48272995	ABCA13|ENST00000417403.5	+	48171457,48192958,48198236,48219353,48221280,48227261,48229824,48234017,48239240,48240866,48242987,48244575,48245511,48245862,48248238,48249211,48268979,48271786	48171552,48193052,48198360,48219505,48221309,48227425,48229955,48234227,48239405,48241066,48243084,48244703,48245612,48246030,48248444,48249351,48269094,48272995	0.777778
SK_MEL_5_nuclear_fraction	chr12	110203874	110203934	110203881	+	High_confidence	4	4	23	1.694977	4.055958	chr12	110203870	110203951	LINE|L1|HAL1	+	chr12	110203334	110218560	IFT81|ENST00000550748.1	+	110203334,110205594,110209170,110218043	110205514,110205680,110209216,110218560	0.956522
SK_MEL_5_nuclear_fraction	chr3	101858799	101858809	101858799	+	RAMPAGE_only	4	4	12	0.884336	3.584963	chr3	101858476	101858861	DNA|TcMar-Tigger|Tigger15a	-	chr3	101857199	101859539	NFKBIZ|ENST00000495719.1	+	101857199,101859317	101857459,101859539	0.666667
SK_MEL_5_nuclear_fraction	chr8	62164676	62164816	62164804	-	High_confidence	158	161	678	49.964977	7.530124	chr8	62164702	62165238	LINE|L1|L1PB1	+	chr8	62129604	62164821	MSTRG.56244.1	-	62129604,62164568	62135746,62164821	0.581121
SK_MEL_5_nuclear_fraction	chr2	108189500	108189527	108189500	-	High_confidence	2	2	9	0.663252	2.750000	chr2	108189389	108189886	LTR|ERVK|LTR3B_	+	chr2	108166984	108189480	MSTRG.32168.1	-	108166984,108169497,108179153,108184457,108189361	108167769,108169586,108179281,108184682,108189480	0.777778
SK_MEL_5_nuclear_fraction	chr14	45715967	45715968	45715967	-	High_confidence	169	171	183	13.486122	5.057558	chr14	45715770	45716282	LTR|ERVK|LTR3B_	-	chr14	45706271	45715952	LINC02303|ENST00000555442.1	-	45706271,45711898,45715349	45706502,45711953,45715952	0.923497
SK_MEL_5_nuclear_fraction	chr7	154928481	154928504	154928503	+	High_confidence	23	23	47	3.463649	4.969274	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.872340
SK_MEL_5_nuclear_fraction	chr4	38816533	38816536	38816533	-	High_confidence	81	89	130	9.580305	6.292591	chr4	38816327	38816690	LTR|ERVL-MaLR|MSTA	-	chr4	38814279	38816627	MSTRG.42924.1	-	38814279	38816627	0.938462
SK_MEL_5_nuclear_fraction	chr4	189722269	189722384	189722290	-	High_confidence	27	27	177	13.043954	6.669536	chr4	189721949	189722303	LINE|L1|L1M3b	+	chr4	189703880	189722536	MSTRG.45041.1	-	189703880,189716234,189721205,189722401	189708489,189716368,189722279,189722536	0.864407
SK_MEL_5_nuclear_fraction	chr7	14021175	14021219	14021185	-	High_confidence	35	41	312	22.992733	4.955956	chr7	14020629	14021160	LTR|ERVL-MaLR|MLT1F2	-	chr7	14019154	14021174	MSTRG.52085.1	-	14019154	14021174	0.990385
SK_MEL_5_nuclear_fraction	chr1	161514519	161514520	161514519	+	High_confidence	10	10	10	0.736947	3.121928	chr1	161514472	161514669	LTR|ERV1|MER34B-int	+	chr1	161514619	161518603	FCGR2A|ENST00000486608.1	+	161514619,161517974	161514874,161518603	0.900000
SK_MEL_5_nuclear_fraction	chr22	28629933	28629941	28629940	-	RAMPAGE_only	5	7	11	0.810641	2.921928	chr22	28629888	28630279	LTR|ERVL-MaLR|MSTB1	+	chr22	27978013	28679865	TTC28|ENST00000397906.6	-	27978013,27985248,27989877,27990788,27992586,27993286,27996134,27998539,28001373,28014247,28030225,28094079,28096189,28098914,28101170,28105278,28107061,28163091,28296197,28297579,28306495,28629551,28679621	27983851,27985356,27990007,27990812,27992663,27993518,27996259,27999260,28001553,28014392,28030366,28094245,28096408,28099044,28101280,28105802,28108403,28163599,28296328,28297852,28306643,28629830,28679865	0.545455
SK_MEL_5_nuclear_fraction	chr8	126840362	126840398	126840376	+	High_confidence	409	422	1534	113.047602	6.844381	chr8	126840388	126840490	LINE|L2|L2a	+	chr8	126840378	126841672	MSTRG.57418.1	+	126840378	126841672	0.979791
SK_MEL_5_nuclear_fraction	chr7	95594302	95594308	95594302	-	RAMPAGE_only	21	21	42	3.095176	4.068278	chr7	95594230	95594384	SINE|MIR|MIRb	+	chr7	95584374	95596460	MSTRG.53623.3	-	95584374,95587009,95587417,95589639,95591987,95592510,95592759,95593698,95596163	95585781,95587123,95587825,95589716,95592065,95592597,95592944,95595164,95596460	1.000000
SK_MEL_5_nuclear_fraction	chr5	128135561	128135588	128135587	+	RAMPAGE_only	4	4	17	1.252809	3.327820	chr5	128135517	128135661	LINE|L2|L2a	-	chr5	128083847	128188442	SLC12A2|ENST00000343225.4	+	128083847,128112813,128114211,128114585,128131066,128134164,128135699,128138596,128138823,128141829,128147621,128148753,128149996,128151240,128152705,128158052,128161659,128167760,128171666,128174540,128178566,128180882,128182854,128184365,128184788,128186495	128084710,128112933,128114287,128114681,128131206,128134275,128135808,128138724,128138908,128141981,128147729,128148877,128150098,128151396,128152805,128158164,128161800,128167867,128171746,128174666,128178689,128180994,128182941,128184501,128184856,128188442	0.823529
SK_MEL_5_nuclear_fraction	chr8	134799944	134800120	134800119	-	High_confidence	5	5	60	4.421679	4.642319	chr8	134799875	134800117	SINE|MIR|MIRb	-	chr8	134792019	134800518	MSTRG.57468.2	-	134792019,134796377	134796340,134800518	1.000000
SK_MEL_5_nuclear_fraction	chr17	81845325	81845355	81845325	-	High_confidence	3	4	12	0.884336	3.277613	chr17	81845321	81845418	SINE|Alu|AluJo	+	chr17	81843491	81845456	P4HB|ENST00000473021.1	-	81843491,81845143	81844092,81845456	0.750000
SK_MEL_5_nuclear_fraction	chr4	84299315	84299320	84299315	-	High_confidence	2	2	6	0.442168	2.584963	chr4	84298780	84304810	LINE|L1|L1PA2	+	chr4	83968081	84299246	MSTRG.43622.2	-	83968081,84012054,84148046,84149218,84243110,84284205,84286668,84293219,84299123	83970110,84012119,84148130,84149256,84243216,84284326,84286827,84293409,84299246	0.666667
SK_MEL_5_nuclear_fraction	chr11	21752852	21752853	21752852	-	High_confidence	62	62	79	5.821878	5.039608	chr11	21752440	21753682	LTR|ERV1|LTR12C	-	chr11	21746553	21752676	MSTRG.8774.1	-	21746553,21752514	21746641,21752676	0.797468
SK_MEL_5_nuclear_fraction	chr13	51643412	51643415	51643414	+	RAMPAGE_only	3	5	7	0.515863	2.521641	chr13	51643381	51643465	LINE|L2|L2b	-	chr13	51584507	51767707	WDFY2|ENST00000298125.6	+	51584507,51660595,51675169,51703595,51719197,51727677,51739048,51751309,51755357,51756331,51758191,51759739	51584824,51660663,51675243,51703650,51719348,51727790,51739175,51751415,51755459,51756462,51758300,51767707	0.571429
SK_MEL_5_nuclear_fraction	chr7	47401170	47401224	47401223	-	RAMPAGE_only	12	13	104	7.664244	5.717431	chr7	47401190	47401377	LINE|CR1|L3b	-	chr7	47275153	47403425	MSTRG.52790.1	-	47275153,47280163,47280285,47283696,47291954,47292827,47293732,47297081,47302185,47302949,47304831,47344754,47344923,47346186,47368364,47396799,47400392,47400784,47403267	47278220,47280190,47280354,47283865,47292032,47292905,47293828,47297213,47302272,47303584,47305003,47344838,47345038,47346356,47369621,47396904,47400458,47400914,47403425	0.846154
SK_MEL_5_nuclear_fraction	chr13	59974541	59974549	59974541	-	RAMPAGE_only	2	2	6	0.442168	2.584963	chr13	59974505	59974720	SINE|tRNA-RTE|MamSINE1	-	chr13	59923037	60010639	MSTRG.15209.11	-	59923037,59924774,59969943,59970851,59974351,59980794,59983768,59991157,59992067,59992472,60008543,60010532	59923111,59924870,59970058,59971160,59974456,59980859,59983887,59991274,59992186,59992583,60008649,60010639	0.833333
SK_MEL_5_nuclear_fraction	chr11	108223526	108223598	108223553	+	High_confidence	4	4	19	1.400198	3.947703	chr11	108223533	108223589	SINE|MIR|MIR	+	chr11	108223115	108366034	MSTRG.10678.6	+	108223115,108227594,108227775,108229177,108235669,108243952,108244787,108246963,108248932,108250700,108251836,108252816,108253813,108256214,108257480,108258985,108267170,108268409,108271063,108271250,108272531,108272721,108279490,108280994,108282709,108284226,108287599,108288976,108289601,108292618,108293312,108294926,108297286,108299713,108301647,108302852,108304674,108307896,108310159,108312410,108315822,108316010,108317372,108319953,108321300,108325309,108326057,108327644,108329020,108330213,108331443,108331878,108332761,108333885,108334968,108335844,108343221,108345742,108347278,108353765,108354810,108365081,108365324	108224871,108227696,108227888,108229323,108235834,108244118,108245026,108247127,108249102,108251072,108252031,108252912,108254039,108256340,108257606,108259075,108267342,108268609,108271146,108271406,108272607,108272852,108279608,108281168,108282879,108284473,108287715,108289103,108289801,108292793,108293477,108295059,108297382,108299885,108301789,108303029,108304852,108307984,108310315,108312498,108315911,108316113,108317521,108320058,108321420,108325544,108326225,108327758,108329238,108330421,108331557,108332037,108332900,108333968,108335109,108335961,108343371,108345908,108347365,108353880,108354874,108365218,108366034	0.947368
SK_MEL_5_nuclear_fraction	chr5	104911006	104911047	104911006	-	High_confidence	3	4	9	0.663252	2.725481	chr5	104910764	104911175	LTR|ERVL|LTR16	-	chr5	104383297	104910733	AC099520.1|ENST00000524336.5	-	104383297,104886857,104910661	104383382,104886975,104910733	0.555556
SK_MEL_5_nuclear_fraction	chr7	30623471	30623594	30623593	+	RAMPAGE_only	10	10	63	4.642763	4.936816	chr7	30623137	30623999	LINE|L1|L1MEf	+	chr7	30594883	30634033	MSTRG.52482.6	+	30594883,30598795,30599946,30601058,30603033,30603495,30612095,30614243,30615895,30617113,30621392,30622316,30628559,30631447,30632246,30633734	30595143,30598897,30600049,30601200,30603122,30609730,30612245,30614285,30616058,30617278,30621500,30626319,30628669,30631541,30632437,30634033	0.968254
SK_MEL_5_nuclear_fraction	chr4	37001803	37001812	37001805	+	High_confidence	509	549	831	61.240259	7.464546	chr4	37001705	37002035	LTR|ERV1|MER48	+	chr4	37001815	37020708	AL136537.2|ENST00000562049.1	+	37001815,37018317	37001895,37020708	0.675090
SK_MEL_5_nuclear_fraction	chr8	28447453	28447476	28447475	+	RAMPAGE_only	5	5	15	1.105420	3.182006	chr8	28447393	28447671	LINE|L1|L1MC5	+	chr8	28448953	28455902	AC025871.1|ENST00000518819.1	+	28448953,28455623	28449106,28455902	0.533333
SK_MEL_5_nuclear_fraction	chr15	69422823	69422870	69422823	+	High_confidence	5	5	30	2.210840	4.351823	chr15	69422804	69423097	SINE|Alu|AluSx	-	chr15	69422899	69447918	KIF23|ENST00000558585.5	+	69422899,69423158,69425281,69426069,69426335,69429110,69435482,69435651,69436137,69436563,69438247,69439903,69440307,69444789,69446008,69446282,69446870,69447791	69423034,69423329,69425323,69426182,69426457,69429213,69435562,69435771,69436261,69436722,69438405,69440077,69440487,69445041,69446091,69446364,69446941,69447918	0.833333
SK_MEL_5_nuclear_fraction	chr3	129439765	129439785	129439765	-	High_confidence	2	3	7	0.515863	2.807355	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129432532	129439927	MSTRG.40826.7	-	129432532,129433097,129433849,129434061,129436460,129439729	129432606,129433247,129433984,129434136,129437950,129439927	0.857143
SK_MEL_5_nuclear_fraction	chr16	11782569	11782589	11782569	-	High_confidence	5	5	21	1.547588	4.037401	chr16	11782466	11782586	LINE|L2|L2c	+	chr16	11750585	11782552	ZC3H7A|ENST00000396516.6	-	11750585,11752668,11756236,11758430,11761405,11761909,11762670,11763477,11765052,11765488,11767416,11768314,11769030,11770782,11774235,11774979,11776319,11776451,11776750,11779165,11781424,11782286	11751506,11752832,11756370,11758539,11761511,11762043,11762747,11763659,11765153,11765685,11767578,11768501,11769095,11770987,11774519,11775013,11776358,11776532,11776909,11779363,11781464,11782552	0.761905
SK_MEL_5_nuclear_fraction	chr9	12694459	12694529	12694459	+	RAMPAGE_only	5	5	22	1.621282	4.186704	chr9	12694435	12694550	SINE|MIR|MIR3	-	chr9	12693308	12709235	MSTRG.57982.5	+	12693308,12693911,12702270,12704525	12693478,12695837,12702438,12709235	1.000000
SK_MEL_5_nuclear_fraction	chr21	10328367	10328437	10328380	-	RAMPAGE_only	3	4	23	1.694977	4.277613	chr21	10328293	10328546	LINE|L1|L1MCa	-	chr21	10325559	10342713	MSTRG.36198.1	-	10325559	10342713	0.956522
SK_MEL_5_nuclear_fraction	chr12	9569117	9569163	9569153	+	RAMPAGE_only	36	39	169	12.454397	4.183440	chr12	9568603	9569205	LTR|ERV1|HERVE-int	-	chr12	9558385	9576294	MSTRG.11559.12	+	9558385,9559174,9560109,9560816,9564159,9565091,9567489,9569057,9570765,9571460,9573002,9573465,9574846,9575642,9576117	9558452,9559348,9560191,9562976,9564325,9565303,9567567,9569202,9570892,9571573,9573093,9573534,9574949,9575717,9576294	0.923077
SK_MEL_5_nuclear_fraction	chr10	95711724	95711756	95711755	+	High_confidence	9	10	42	3.095176	4.898153	chr10	95711747	95711902	LTR|ERV1|MER39B	+	chr10	95711778	95869695	ENTPD1|ENST00000453258.6	+	95711778,95823236,95839690,95842343,95844475,95845356,95847445,95860468,95864723,95866176	95711993,95823364,95839808,95842494,95844635,95845596,95847706,95860582,95864861,95869695	0.833333
SK_MEL_5_nuclear_fraction	chr13	114242692	114242771	114242752	+	RAMPAGE_only	8	8	53	3.905817	4.276245	chr13	114242779	114243005	DNA|hAT-Charlie|MER20	+	chr13	114235080	114262979	MSTRG.16005.8	+	114235080,114236644,114236798,114238989,114239349,114242120,114243855,114244889,114245999,114246930,114250548,114257077,114259334,114261886,114262878	114235132,114236699,114236896,114239028,114239490,114243348,114243989,114244969,114246049,114247004,114250674,114257230,114259398,114261948,114262979	0.924528
SK_MEL_5_nuclear_fraction	chr19	50099086	50099087	50099086	-	High_confidence	1107	1121	1394	102.730350	4.896612	chr19	50098955	50099087	SINE|Alu|AluYa5	-	chr19	50098786	50099081	MSTRG.29406.1	-	50098786	50099081	0.956958
SK_MEL_5_nuclear_fraction	chr14	50756526	50756589	50756568	-	RAMPAGE_only	3	3	12	0.884336	3.418296	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
SK_MEL_5_nuclear_fraction	chr11	71480195	71480253	71480252	+	High_confidence	7	8	38	2.800397	3.437066	chr11	71480150	71480472	SINE|Alu|AluSq2	-	chr11	71480151	71482986	MSTRG.9926.19	+	71480151,71480754,71481922,71482848	71480274,71481404,71482025,71482986	0.973684
SK_MEL_5_nuclear_fraction	chr9	3369290	3369319	3369314	-	RAMPAGE_only	16	16	74	5.453405	5.158231	chr9	3369143	3369489	LTR|ERVL-MaLR|MLT1A0	-	chr9	3247036	3395596	RFX3|ENST00000358730.6	-	3247036,3256990,3262934,3266207,3270370,3271002,3275499,3277339,3288130,3293076,3301545,3330258,3346666,3395471	3248185,3257199,3263084,3266305,3270525,3271118,3275612,3277461,3288250,3293258,3301620,3330517,3346764,3395596	0.554054
SK_MEL_5_nuclear_fraction	chrX	71547313	71547365	71547347	+	RAMPAGE_only	8	8	54	3.979511	4.372289	chrX	71547285	71547497	DNA|hAT-Charlie|MER103C	-	chrX	71533127	71556778	MSTRG.61324.4	+	71533127,71536177,71537828,71544566,71554512,71555189,71555953,71556679	71533336,71536358,71538072,71548023,71554592,71555385,71556094,71556778	0.981481
SK_MEL_5_nuclear_fraction	chr8	86413374	86413427	86413424	+	High_confidence	6	10	35	2.579313	4.616875	chr8	86413309	86413645	LINE|L2|L2c	-	chr8	86413557	86467476	MSTRG.56722.6	+	86413557,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86413971,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	0.771429
SK_MEL_5_nuclear_fraction	chr7	76594685	76594721	76594685	+	High_confidence	5	5	17	1.252809	3.577820	chr7	76594617	76598978	LINE|L1|L1PA15	+	chr7	76594563	76605187	MSTRG.53339.1	+	76594563,76603873	76602413,76605187	0.941176
SK_MEL_5_nuclear_fraction	chr1	64220530	64220579	64220530	+	RAMPAGE_only	7	7	32	2.358229	4.309035	chr1	64219978	64220818	LINE|L1|HAL1	-	chr1	64215452	64244340	UBE2U|ENST00000464349.1	+	64215452,64220858,64232560,64241651,64244129	64215525,64220907,64232649,64241733,64244340	0.656250
SK_MEL_5_nuclear_fraction	chr5	8758358	8758401	8758400	-	RAMPAGE_only	2	2	7	0.515863	2.807355	chr5	8758375	8758730	LTR|ERVL-MaLR|THE1D	+	chr5	8746084	8784858	MSTRG.45230.1	-	8746084,8758097,8783434	8751005,8758250,8784858	0.714286
SK_MEL_5_nuclear_fraction	chr10	69495121	69495126	69495125	+	High_confidence	8	9	21	1.547588	3.932138	chr10	69494989	69495143	SINE|MIR|MIR3	+	chr10	69495134	69506995	TSPAN15|ENST00000459981.1	+	69495134,69495593,69498279,69504437,69506123,69506828	69495423,69495689,69498396,69504485,69506240,69506995	0.714286
SK_MEL_5_nuclear_fraction	chr14	63974371	63974427	63974394	+	RAMPAGE_only	6	6	35	2.579313	4.312036	chr14	63974232	63974537	LTR|ERVL-MaLR|MSTB1	-	chr14	63909097	64225564	SYNE2|ENST00000554584.5	+	63909097,63940613,63941694,63941884,63942050,63949824,63954718,63961524,63963898,63967708,63976562,63977904,63978851,63980653,63980985,63982629,63983736,63986455,63990410,63990941,63993834,63995043,63996946,63997300,63998218,63998913,64000561,64001933,64002719,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024256,64024911,64025129,64026578,64027483,64029894,64031015,64034493,64047999,64049610,64051556,64055943,64062750,64065431,64070644,64073967,64075944,64078465,64080455,64081442,64087670,64089573,64090865,64093348,64097948,64098746,64101985,64107490,64113340,64119426,64120926,64122011,64125128,64126326,64126597,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64167232,64167494,64168876,64170227,64173898,64174943,64177357,64188549,64188859,64190070,64190601,64190915,64202186,64202800,64208757,64209427,64209950,64211960,64212810,64214193,64216247,64219207,64220436,64221575,64223188,64224460,64224982,64225318	63909227,63940675,63941790,63941962,63942143,63950006,63954915,63961625,63964000,63967846,63976727,63978017,63979014,63980732,63981173,63982794,63983886,63986617,63990569,63991115,63993969,63995202,63997158,63997391,63998328,63999040,64000719,64002081,64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64022863,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64034592,64048155,64049876,64053657,64056266,64062895,64065650,64070910,64074136,64076100,64078606,64080638,64081580,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64125210,64126479,64126807,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64167387,64167639,64168971,64170321,64174009,64175138,64177483,64188708,64189009,64190237,64190614,64191120,64202265,64202963,64208945,64209578,64210124,64212098,64212954,64214470,64216424,64219410,64220637,64221704,64223380,64224547,64225045,64225564	0.885714
SK_MEL_5_nuclear_fraction	chr19	35399508	35399603	35399538	+	High_confidence	837	924	3422	252.183112	7.234490	chr19	35399184	35399804	LTR|ERV1|MER49	+	chr19	35399547	35419370	MSTRG.28576.4	+	35399547,35406584,35409285,35411161,35419159	35399657,35409151,35409472,35411282,35419370	0.888369
SK_MEL_5_nuclear_fraction	chr3	185675947	185676016	185675967	-	High_confidence	11	11	22	1.621282	3.880180	chr3	185675957	185676235	LTR|ERVL-MaLR|MLT1L	+	chr3	185675015	185675846	IGF2BP2|ENST00000496495.1	-	185675015,185675790	185675431,185675846	0.863636
SK_MEL_5_nuclear_fraction	chr11	17866880	17866881	17866880	-	RAMPAGE_only	74	93	99	7.295771	5.924712	chr11	17866710	17867056	LTR|ERVL-MaLR|THE1B	-	chr11	17788051	17863697	SERGEF|ENST00000524589.5	-	17788051,17863565	17788413,17863697	0.505051
SK_MEL_5_nuclear_fraction	chr7	48105083	48105139	48105083	+	High_confidence	4	4	22	1.621282	3.784942	chr7	48104893	48105542	LINE|L1|L1M8	+	chr7	48104645	48108415	UPP1|ENST00000495446.1	+	48104645,48107360,48108217	48107082,48107507,48108415	0.954545
SK_MEL_5_nuclear_fraction	chr5	15635220	15635221	15635220	+	High_confidence	11	16	16	1.179114	3.452820	chr5	15635068	15635559	LTR|ERVL-MaLR|MLT1H1	-	chr5	15635517	15635767	MSTRG.45339.1	+	15635517	15635767	0.937500
SK_MEL_5_nuclear_fraction	chr13	45376962	45377042	45377041	+	RAMPAGE_only	8	9	38	2.800397	4.648510	chr13	45376606	45377218	LTR|ERV1|HERVE-int	-	chr13	45378529	45390879	TPT1-AS1|ENST00000520585.5	+	45378529,45379194,45379898,45383090,45383759,45389734,45390757	45378671,45379335,45380001,45383235,45383838,45389820,45390879	0.710526
SK_MEL_5_nuclear_fraction	chr16	90092076	90092092	90092081	-	High_confidence	4	4	20	1.473893	3.721928	chr16	90091858	90092142	SINE|Alu|AluSx1	+	chr16	90075004	90092072	PRDM7|ENST00000569206.1	-	90075004,90083145,90086772,90091606	90075023,90083255,90086870,90092072	0.550000
SK_MEL_5_nuclear_fraction	chr8	126840512	126840697	126840512	+	High_confidence	40	52	415	30.583282	6.883044	chr8	126840483	126840714	LINE|CR1|L3	+	chr8	126840378	126841672	MSTRG.57418.1	+	126840378	126841672	0.997590
SK_MEL_5_nuclear_fraction	chr17	43124971	43124972	43124971	-	High_confidence	13	13	17	1.252809	3.690117	chr17	43124781	43124980	SINE|Alu|AluSx	-	chr17	43094111	43125300	BRCA1|ENST00000492859.5	-	43094111,43095845,43097243,43099774,43104121,43104867,43106455,43110464,43115725,43124016,43125270	43094860,43095922,43097289,43099880,43104261,43104956,43106533,43110580,43115779,43124115,43125300	0.764706
SK_MEL_5_nuclear_fraction	chr11	88107995	88108060	88108048	-	RAMPAGE_only	4	5	17	1.252809	3.219528	chr11	88107545	88109129	LINE|L1|L1P2	-	chr11	88104743	88112192	MSTRG.10393.1	-	88104743	88112192	0.823529
SK_MEL_5_nuclear_fraction	chr9	129489032	129489140	129489125	+	High_confidence	43	66	173	12.749175	6.342446	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.566474
SK_MEL_5_nuclear_fraction	chr22	32223019	32223177	32223109	-	RAMPAGE_only	11	11	54	3.979511	4.924199	chr22	32222928	32223516	LINE|L1|L1ME3G	-	chr22	32213466	32233248	MSTRG.37640.2	-	32213466,32213835,32220919,32229193,32230967,32232898,32233148	32213699,32218725,32225823,32229344,32231075,32233034,32233248	0.962963
SK_MEL_5_nuclear_fraction	chr17	47067498	47067518	47067498	-	High_confidence	251	279	1092	80.474564	6.295567	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.862637
SK_MEL_5_nuclear_fraction	chr19	48270142	48270152	48270151	+	High_confidence	5	6	11	0.810641	3.121928	chr19	48270187	48270421	SINE|Alu|AluJr	+	chr19	48270101	48287608	ZNF114|ENST00000595607.5	+	48270101,48271244,48271726,48279730,48282370,48285760	48270219,48271449,48271828,48279808,48282497,48287608	0.818182
SK_MEL_5_nuclear_fraction	chr5	33441374	33441415	33441414	+	High_confidence	46	46	237	17.465633	6.399177	chr5	33441307	33441471	SINE|MIR|MIR3	-	chr5	33441380	33448730	TARS|ENST00000506040.1	+	33441380,33445323,33448540	33441864,33445404,33448730	0.696203
SK_MEL_5_nuclear_fraction	chr3	180609144	180609322	180609144	+	High_confidence	7	7	108	7.959023	3.005539	chr3	180609089	180609314	DNA|hAT-Charlie|MER20	+	chr3	180608162	180610980	MSTRG.41771.13	+	180608162,180608670,180610705	180608591,180610003,180610980	0.972222
SK_MEL_5_nuclear_fraction	chr14	40954674	40954701	40954700	+	High_confidence	40	40	131	9.654000	6.399141	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954592	40975517	MSTRG.16541.1	+	40954592,40962789,40974339	40954952,40962842,40975517	0.587786
SK_MEL_5_nuclear_fraction	chr3	15341379	15341382	15341379	-	High_confidence	39	55	90	6.632519	5.921041	chr3	15341159	15341407	LINE|L2|L2a	+	chr3	15255649	15341368	SH3BP5|ENST00000408919.7	-	15255649,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341368	0.566667
SK_MEL_5_nuclear_fraction	chr2	45192664	45192666	45192665	-	RAMPAGE_only	7	11	12	0.884336	3.277613	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	0.750000
SK_MEL_5_nuclear_fraction	chr6	78956377	78956398	78956397	-	RAMPAGE_only	3	3	11	0.810641	2.913977	chr6	78956249	78956547	LINE|L2|L2	+	chr6	78940545	78982943	PHIP|ENST00000479165.1	-	78940545,78945299,78946000,78946710,78947622,78954813,78955231,78955612,78961689,78963096,78965702,78965944,78969834,78970048,78970780,78978591,78982885	78941330,78945497,78946260,78946874,78947775,78954963,78955282,78958600,78961810,78963252,78965764,78966056,78969917,78970173,78970888,78978711,78982943	0.909091
SK_MEL_5_nuclear_fraction	chrX	27918191	27918240	27918217	-	High_confidence	1094	1136	3382	249.235326	5.868330	chrX	27918146	27918747	LINE|L2|L2a	+	chrX	27893347	27918365	MSTRG.60790.1	-	27893347,27910287,27918172	27898334,27918050,27918365	0.989651
SK_MEL_5_nuclear_fraction	chr10	81403763	81403803	81403779	+	High_confidence	19	23	107	7.885328	5.478154	chr10	81403540	81404238	LINE|L1|L1M4	-	chr10	81403697	81411872	MSTRG.7052.1	+	81403697,81406477,81410397	81405008,81406641,81411872	1.000000
SK_MEL_5_nuclear_fraction	chr5	57442743	57442767	57442766	+	RAMPAGE_only	5	6	9	0.663252	2.725481	chr5	57442472	57442862	LTR|ERVL-MaLR|MLT1G1	-	chr5	57486753	57535380	MSTRG.45949.4	+	57486753,57488653,57494074,57496779,57532935	57486894,57488928,57494225,57496917,57535380	0.555556
SK_MEL_5_nuclear_fraction	chr12	110126795	110126856	110126855	+	High_confidence	26	26	171	12.601786	6.276693	chr12	110126830	110126960	DNA|hAT-Charlie|MER102b	-	chr12	110127472	110218786	IFT81|ENST00000550156.5	+	110127472,110128045,110128949,110132546,110134947,110135326,110136775,110143381,110146952,110162918,110180421,110190919,110192616,110203863,110205442,110205594,110209170,110216536,110216707,110218043	110127524,110128149,110129130,110132636,110135013,110135437,110136860,110143545,110147048,110163065,110180571,110191048,110192706,110203950,110205514,110205680,110209216,110216605,110216833,110218786	0.520468
SK_MEL_5_nuclear_fraction	chr2	43704027	43704038	43704027	+	RAMPAGE_only	3	3	9	0.663252	2.725481	chr2	43704069	43704379	LINE|L1|L1MB2	+	chr2	43637338	43765792	MSTRG.30777.6	+	43637338,43644670,43678862,43692513,43694430,43695142,43697170,43699646,43703980,43706321,43707400,43709989,43710219,43710488,43720668,43725747,43726271,43729636,43731489,43738340,43740945,43742740,43743833,43745865,43753618,43757118,43758899,43762303,43764227,43765412	43637379,43644796,43678925,43692663,43694514,43695224,43697356,43700608,43704056,43706416,43707545,43710126,43710330,43712383,43720749,43725821,43726451,43729745,43731602,43738520,43741043,43742918,43743989,43745963,43753760,43757264,43759029,43762390,43764365,43765792	0.888889
SK_MEL_5_nuclear_fraction	chr7	30563394	30563399	30563398	+	High_confidence	17	18	35	2.579313	4.843569	chr7	30563019	30563431	LINE|CR1|L3	+	chr7	30563015	30583349	MSTRG.52480.4	+	30563015,30568661,30577722	30563498,30568701,30583349	0.942857
SK_MEL_5_nuclear_fraction	chrX	135894249	135894340	135894280	+	High_confidence	26	33	183	13.486122	5.969886	chrX	135894101	135894371	SINE|Alu|AluSp	-	chrX	135893633	135913061	SAGE1|NM_018666.2	+	135893633,135896242,135901558,135904476,135905251,135906023,135906410,135906925,135907312,135907700,135908088,135908476,135908863,135909638,135910029,135910414,135911191,135911578,135912320,135912797	135893800,135896329,135901691,135904569,135905392,135906164,135906551,135907066,135907453,135907841,135908229,135908617,135909004,135909779,135910170,135910555,135911332,135911953,135912414,135913061	0.715847
SK_MEL_5_nuclear_fraction	chr14	67821282	67821286	67821282	+	High_confidence	2	2	7	0.515863	2.521641	chr14	67821104	67821321	LINE|L2|L2c	+	chr14	67822164	67865087	RAD51B|ENST00000485181.5	+	67822164,67823541,67825463,67835079,67865002	67822330,67823627,67825577,67835196,67865087	0.714286
SK_MEL_5_nuclear_fraction	chr3	142999568	142999575	142999573	+	RAMPAGE_only	3	4	8	0.589557	2.521641	chr3	142999348	142999649	SINE|Alu|AluY	+	chr3	143001167	143056500	U2SURP|ENST00000488497.7	+	143001167,143010814,143012221,143014310,143016256,143016841,143019968,143020598,143021349,143021472,143022496,143022852,143027148,143028339,143028482,143032783,143033270,143034887,143035981,143037178,143038107,143038893,143043116,143050938,143053675,143054942,143056311	143001673,143010859,143012353,143014409,143016371,143016975,143020036,143020693,143021385,143021555,143022662,143023064,143027253,143028406,143028646,143032946,143033350,143034975,143036104,143037335,143038203,143038960,143043276,143051049,143053794,143055119,143056500	0.500000
SK_MEL_5_nuclear_fraction	chr12	28703373	28703396	28703376	-	RAMPAGE_only	4	4	12	0.884336	3.277613	chr12	28703250	28704210	LINE|L1|L1MEc	-	chr12	28692344	28795006	MSTRG.12054.3	-	28692344,28715327,28793641,28794303	28708113,28715487,28793745,28795006	0.916667
SK_MEL_5_nuclear_fraction	chr16	11782693	11782779	11782761	-	High_confidence	17	23	140	10.317252	5.583913	chr16	11782598	11782913	SINE|Alu|AluSx1	-	chr16	11750585	11782552	ZC3H7A|ENST00000396516.6	-	11750585,11752668,11756236,11758430,11761405,11761909,11762670,11763477,11765052,11765488,11767416,11768314,11769030,11770782,11774235,11774979,11776319,11776451,11776750,11779165,11781424,11782286	11751506,11752832,11756370,11758539,11761511,11762043,11762747,11763659,11765153,11765685,11767578,11768501,11769095,11770987,11774519,11775013,11776358,11776532,11776909,11779363,11781464,11782552	0.807143
SK_MEL_5_nuclear_fraction	chr10	9878094	9878095	9878094	-	High_confidence	10	12	12	0.884336	3.251629	chr10	9877868	9878570	LTR|ERV1|MER50B	+	chr10	9758782	9878060	AL358214.1|ENST00000647601.1	-	9758782,9790673,9877747	9758967,9790788,9878060	0.583333
SK_MEL_5_nuclear_fraction	chr11	32594540	32594574	32594552	+	High_confidence	3	3	10	0.736947	3.169925	chr11	32594442	32594644	SINE|MIR|MIRb	+	chr11	32593768	32602302	EIF3M|ENST00000525054.1	+	32593768,32594913,32595965,32600688,32601761,32602278	32593949,32595013,32596047,32600832,32601822,32602302	0.800000
SK_MEL_5_nuclear_fraction	chr3	15341578	15341579	15341578	+	High_confidence	56	57	78	5.748183	5.228402	chr3	15341407	15341757	LTR|ERVL-MaLR|THE1D	+	chr3	15341583	15344371	MSTRG.38712.1	+	15341583,15343496	15341644,15344371	0.717949
SK_MEL_5_nuclear_fraction	chr4	97633866	97633996	97633866	-	High_confidence	4	5	41	3.021481	4.668170	chr4	97633479	97639503	LINE|L1|L1PA3	+	chr4	97385959	97633823	AC034154.1|ENST00000518105.1	-	97385959,97387813,97392641,97572647,97633477	97386057,97387902,97392728,97572718,97633823	0.634146
SK_MEL_5_nuclear_fraction	chr4	188400561	188400586	188400561	+	High_confidence	3	4	24	1.768672	4.053509	chr4	188400440	188400580	LTR|ERVL-MaLR|MLT1D	-	chr4	188400735	188485865	LINC01060|ENST00000512839.5	+	188400735,188436703,188476697,188477637,188485778	188400833,188436900,188476756,188477912,188485865	0.625000
SK_MEL_5_nuclear_fraction	chr5	104079901	104079939	104079918	+	High_confidence	301	413	1050	77.379389	7.188519	chr5	104074362	104080381	LINE|L1|L1PA2	-	chr5	104079910	104105403	LINC02163|ENST00000514769.1	+	104079910,104080907,104081879,104104173,104105359	104080124,104081041,104081947,104104287,104105403	0.598095
SK_MEL_5_nuclear_fraction	chr14	100569593	100569656	100569593	-	High_confidence	8	8	42	3.095176	4.174192	chr14	100569527	100569624	LINE|L2|L2b	+	chr14	100538887	100569558	BEGAIN|ENST00000556188.5	-	100538887,100540495,100543857,100544999,100546500,100567910,100569426	100539315,100540579,100543965,100545066,100546662,100567939,100569558	0.785714
SK_MEL_5_nuclear_fraction	chr2	202966037	202966085	202966037	+	RAMPAGE_only	12	12	36	2.653008	4.513646	chr2	202965833	202966297	LTR|ERVL-MaLR|MLT1F2	-	chr2	202938513	202983935	MSTRG.33915.23	+	202938513,202941859,202942739,202952558,202954004,202955673,202961236,202966977,202969918,202971504,202974333,202977268,202981554,202982071,202983505	202938549,202941980,202942967,202952679,202954134,202955758,202961426,202967098,202970062,202971738,202974496,202977332,202981685,202982441,202983935	0.694444
SK_MEL_5_nuclear_fraction	chr7	21851154	21851196	21851154	+	High_confidence	4	4	20	1.473893	3.826875	chr7	21851065	21851438	LTR|ERVL-MaLR|THE1C	+	chr7	21851161	21861970	DNAH11|ENST00000607413.5	+	21851161,21852466,21854314,21861852	21851320,21852631,21854455,21861970	0.750000
SK_MEL_5_nuclear_fraction	chr2	37200801	37200803	37200801	+	RAMPAGE_only	9	17	17	1.252809	3.969816	chr2	37200552	37200890	SINE|Alu|AluJo	+	chr2	37231630	37247576	NDUFAF7|ENST00000455230.5	+	37231630,37232105,37236095,37237756,37241577,37242634,37243862,37246051,37247455	37231760,37232266,37236176,37237835,37241637,37242693,37243973,37246195,37247576	0.705882
SK_MEL_5_nuclear_fraction	chr14	24596038	24596058	24596057	+	High_confidence	5	5	18	1.326504	3.058814	chr14	24593738	24596300	LINE|L1|L1PB1	-	chr14	24595849	24646677	MSTRG.16199.6	+	24595849,24622967,24634295,24638594,24639902,24643264	24596002,24623126,24634577,24639262,24640628,24646677	0.777778
SK_MEL_5_nuclear_fraction	chr22	38168075	38168112	38168076	-	High_confidence	17	23	86	6.337740	5.259942	chr22	38167963	38168270	LINE|L2|L2b	+	chr22	38140133	38168077	PLA2G6|ENST00000479641.5	-	38140133,38143104,38145437,38167942	38140169,38143288,38145653,38168077	0.686047
SK_MEL_5_nuclear_fraction	chr17	56203706	56203730	56203729	+	RAMPAGE_only	8	8	33	2.431924	4.077820	chr17	56203673	56203769	LTR|ERVL-MaLR|MLT1I	-	chr17	56110957	56228550	ANKFN1|ENST00000575594.1	+	56110957,56227916	56111046,56228550	0.606061
SK_MEL_5_nuclear_fraction	chr12	77405840	77405885	77405840	+	RAMPAGE_only	3	3	17	1.252809	3.327820	chr12	77405654	77405950	SINE|Alu|AluSx1	+	chr12	77324896	77585108	MSTRG.13159.3	+	77324896,77571858,77585087	77325214,77572266,77585108	0.823529
SK_MEL_5_nuclear_fraction	chr6	167533020	167533057	167533020	-	High_confidence	28	29	77	5.674488	5.540603	chr6	167532881	167533054	LINE|L1|L1MEd	+	chr6	167519562	167533069	MSTRG.51698.1	-	167519562,167531426,167532982	167524861,167532827,167533069	0.844156
SK_MEL_5_nuclear_fraction	chr16	35522405	35522520	35522428	+	RAMPAGE_only	6	6	49	3.611038	4.007140	chr16	35517049	35524053	LTR|ERVK|HERVK3-int	+	chr16	35516817	35524422	MSTRG.21845.1	+	35516817,35522118	35517144,35524422	1.000000
SK_MEL_5_nuclear_fraction	chr12	123270183	123270215	123270201	-	High_confidence	4	4	14	1.031725	3.180833	chr12	123270153	123270246	DNA|hAT-Ac|OldhAT1	+	chr12	123260969	123270234	CDK2AP1|NM_001270433.1	-	123260969,123265195,123267184,123270176	123261803,123265322,123267282,123270234	0.571429
SK_MEL_5_nuclear_fraction	chr10	69494984	69495006	69494984	+	High_confidence	4	5	18	1.326504	3.377444	chr10	69494989	69495143	SINE|MIR|MIR3	+	chr10	69495102	69507229	MSTRG.6780.7	+	69495102,69498232,69504437,69506123,69506828	69495689,69498396,69504485,69506240,69507229	0.888889
SK_MEL_5_nuclear_fraction	chr13	83102339	83102358	83102345	-	High_confidence	103	113	504	37.142107	6.068544	chr13	83102229	83102468	SINE|Alu|AluY	+	chr13	83051381	83102375	MSTRG.15487.1	-	83051381,83099292,83102137	83063313,83099403,83102375	0.882937
SK_MEL_5_nuclear_fraction	chr5	39383989	39384021	39383989	-	RAMPAGE_only	2	2	9	0.663252	2.641604	chr5	39383972	39384045	LINE|CR1|L3	-	chr5	39373020	39424976	MSTRG.45724.10	-	39373020,39375013,39375996,39376649,39381453,39388798,39389096,39389851,39390443,39392364,39393253,39394229,39417188,39418180,39424803	39373425,39375084,39376106,39377282,39388367,39388852,39389123,39389932,39390575,39392463,39393393,39394421,39417284,39418345,39424976	1.000000
SK_MEL_5_nuclear_fraction	chr11	122556711	122556712	122556711	-	High_confidence	9	9	13	0.958031	3.700440	chr11	122556640	122557789	LTR|ERV1|LTR12D	+	chr11	122154754	122556721	MIR100HG|ENST00000533109.6	-	122154754,122180335,122292283,122293306,122539478,122553938,122556403	122155632,122180398,122292403,122293606,122539506,122554025,122556721	0.769231
SK_MEL_5_nuclear_fraction	chr7	76595969	76596082	76595969	+	RAMPAGE_only	3	3	32	2.358229	4.093139	chr7	76594617	76598978	LINE|L1|L1PA15	+	chr7	76594563	76605187	MSTRG.53339.1	+	76594563,76603873	76602413,76605187	1.000000
SK_MEL_5_nuclear_fraction	chr5	27477506	27477785	27477538	+	RAMPAGE_only	30	35	355	26.161603	6.125010	chr5	27477542	27477973	LTR|ERV1|MER61C	+	chr5	27472291	27496280	MSTRG.45475.4	+	27472291,27475534,27484925,27492405	27472519,27478916,27492323,27496280	1.000000
SK_MEL_5_nuclear_fraction	chr4	99906533	99906546	99906545	-	High_confidence	5	5	11	0.810641	2.721928	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.636364
SK_MEL_5_nuclear_fraction	chr2	55267603	55267622	55267621	-	High_confidence	3	3	7	0.515863	2.584963	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.714286
SK_MEL_5_nuclear_fraction	chr7	119703968	119704032	119703983	-	RAMPAGE_only	3	3	15	1.105420	3.093069	chr7	119703788	119704374	LINE|L1|L1MCb	-	chr7	119698873	119713774	MSTRG.54298.6	-	119698873,119713665	119704972,119713774	0.933333
SK_MEL_5_nuclear_fraction	chr10	58320884	58320927	58320896	+	High_confidence	20	21	79	5.821878	5.175551	chr10	58320721	58321272	LTR|ERVL|MLT2B3	+	chr10	58321307	58323723	MSTRG.6638.1	+	58321307	58323723	0.518987
SK_MEL_5_nuclear_fraction	chr3	190518899	190518937	190518907	+	RAMPAGE_only	38	41	145	10.685725	5.948676	chr3	190518544	190518913	LTR|ERVL-MaLR|THE1B	-	chr3	190514539	190651518	MSTRG.41933.14	+	190514539,190518508,190556129,190564288,190604127,190608994,190620274,190623343,190627322,190629349,190644247,190645698,190648337	190518031,190520709,190556216,190564353,190604413,190609181,190620440,190623415,190627449,190629498,190644397,190645842,190651518	0.972414
SK_MEL_5_nuclear_fraction	chr11	65431074	65431177	65431176	+	RAMPAGE_only	4	4	24	1.768672	4.061482	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.916667
SK_MEL_5_nuclear_fraction	chr9	69307100	69307120	69307100	-	High_confidence	5	5	13	0.958031	2.855389	chr9	69306938	69307567	LTR|ERV1|MER41B	-	chr9	69296684	69307135	BANCR|ENST00000624238.2	-	69296684,69304935,69306147,69306853	69296867,69305077,69306290,69307135	0.615385
SK_MEL_5_nuclear_fraction	chr6	132511281	132511350	132511306	-	RAMPAGE_only	8	9	62	4.569069	5.071053	chr6	132511239	132511617	LINE|L2|L2a	+	chr6	132440551	132513065	MSTRG.51006.1	-	132440551,132463992,132468402,132469950,132470573,132471462,132475592,132503445,132513006	132460850,132464075,132468475,132470047,132470626,132472375,132475662,132503588,132513065	0.516129
SK_MEL_5_nuclear_fraction	chr9	128684459	128684493	128684492	-	RAMPAGE_only	30	32	151	11.127893	5.625813	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.509934
SK_MEL_5_nuclear_fraction	chr17	4143196	4143244	4143214	+	High_confidence	26	26	145	10.685725	4.910493	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.993103
SK_MEL_5_nuclear_fraction	chr22	32273254	32273275	32273274	+	High_confidence	5	5	9	0.663252	2.750000	chr22	32273187	32273422	LINE|L1|L1M5	+	chr22	32273419	32277186	AL008723.1|ENST00000452181.1	+	32273419,32276684	32273507,32277186	0.777778
SK_MEL_5_nuclear_fraction	chr12	28705484	28705596	28705547	-	RAMPAGE_only	4	4	47	3.463649	4.669548	chr12	28704920	28705664	LINE|L1|L1MEc	-	chr12	28692344	28795006	MSTRG.12054.3	-	28692344,28715327,28793641,28794303	28708113,28715487,28793745,28795006	0.936170
SK_MEL_5_nuclear_fraction	chr13	79318867	79318880	79318867	-	RAMPAGE_only	4	4	9	0.663252	2.947703	chr13	79318817	79318884	SINE|tRNA|LFSINE_Vert	+	chr13	79311823	79341212	RBM26|ENST00000449987.6	-	79311823,79322348,79334343,79337101,79341122	79314993,79322462,79334430,79337302,79341212	0.555556
SK_MEL_5_nuclear_fraction	chr9	20658568	20658624	20658607	+	High_confidence	8	10	48	3.537343	4.775597	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.625000
SK_MEL_5_nuclear_fraction	chr12	40567764	40567815	40567764	+	High_confidence	3	3	23	1.694977	3.844233	chr12	40567764	40568077	SINE|Alu|AluSq2	+	chr12	40567725	40570832	MSTRG.12179.24	+	40567725,40569002,40569695,40570462	40567840,40569042,40569804,40570832	0.782609
SK_MEL_5_nuclear_fraction	chr7	104776628	104776662	104776628	-	RAMPAGE_only	2	3	9	0.663252	3.169925	chr7	104776476	104776653	DNA|hAT-Charlie|MER5A	-	chr7	104768668	104804084	MSTRG.53976.7	-	104768668,104785219,104785730,104802838,104803955	104779346,104785378,104800069,104802963,104804084	1.000000
SK_MEL_5_nuclear_fraction	chr3	143043123	143043274	143043273	+	RAMPAGE_only	6	6	87	6.411435	5.069439	chr3	143043314	143043694	LINE|L2|L2b	+	chr3	143036082	143056846	U2SURP|ENST00000467348.1	+	143036082,143037178,143038107,143038893,143043116,143050938,143053675,143056311	143036104,143037335,143038203,143038960,143043276,143051049,143053794,143056846	0.540230
SK_MEL_5_nuclear_fraction	chr18	14752330	14752369	14752368	+	RAMPAGE_only	16	16	43	3.168870	4.914637	chr18	14752135	14752389	SINE|MIR|MIRb	-	chr18	14748334	14817089	ANKRD30B|ENST00000580206.1	+	14748334,14752565,14752838,14754898,14757814,14760553,14763685,14769342,14772155,14777984,14779959,14782526,14784335,14784462,14787038,14791400,14796342,14797660,14797781,14799100,14799222,14802216,14803733,14808550,14808671,14809985,14810107,14813103,14814620,14816357	14748640,14752680,14753012,14755005,14757952,14760618,14764090,14769373,14772228,14778075,14780021,14782614,14784364,14784535,14787100,14791491,14796415,14797689,14797854,14799129,14799295,14802278,14803824,14808579,14808744,14810014,14810180,14813165,14814711,14817089	0.720930
SK_MEL_5_nuclear_fraction	chr4	177728735	177728751	177728735	+	High_confidence	6	6	16	1.179114	3.506891	chr4	177728388	177728944	LTR|ERVL|LTR18B	+	chr4	177728756	177990750	LINC01098|ENST00000507870.1	+	177728756,177732366,177960761,177966674,177975803,177990478	177729017,177732479,177960905,177966778,177975943,177990750	0.812500
SK_MEL_5_nuclear_fraction	chr1	89112919	89113048	89113047	-	High_confidence	61	69	217	15.991740	6.083256	chr1	89112996	89113213	SINE|MIR|MIRb	+	chr1	89108116	89113050	GBP2|ENST00000493802.5	-	89108116,89109676,89110163,89112471,89112941	89108291,89109870,89110266,89112684,89113050	0.746544
SK_MEL_5_nuclear_fraction	chr2	191323086	191323089	191323088	+	RAMPAGE_only	29	43	51	3.758427	4.997064	chr2	191322769	191323409	LTR|ERV1|MER41B	-	chr2	191276884	191425389	MYO1B|ENST00000392316.5	+	191276884,191296110,191329934,191341460,191346235,191350161,191360630,191362267,191363727,191364157,191369541,191370226,191381461,191383279,191385883,191387223,191390291,191392107,191393072,191396428,191400381,191402631,191408114,191409043,191411065,191414047,191414516,191416114,191423836	191277030,191296226,191330029,191341565,191346282,191350225,191360729,191362371,191363875,191364276,191369628,191370292,191381566,191383342,191386084,191387450,191390492,191392201,191393222,191396497,191400468,191402718,191408189,191409178,191411172,191414180,191414669,191416242,191425389	0.725490
SK_MEL_5_nuclear_fraction	chr2	37251681	37251718	37251712	-	RAMPAGE_only	10	10	38	2.800397	4.273684	chr2	37251695	37251851	SINE|MIR|MIRc	-	chr2	37250501	37317079	PRKD3|NM_005813.4	-	37250501,37254203,37256661,37259582,37260222,37267429,37269614,37272379,37274420,37275766,37277865,37279745,37282541,37286176,37289355,37290867,37293132,37316236	37253350,37254289,37256929,37259681,37260384,37267536,37269687,37272432,37274697,37275844,37277989,37279929,37282619,37286369,37289513,37290999,37293271,37317079	0.947368
SK_MEL_5_nuclear_fraction	chr14	27612576	27612587	27612576	+	RAMPAGE_only	32	33	50	3.684733	4.235729	chr14	27612284	27612881	LTR|ERVL|LTR66	+	chr14	27529256	27613926	MSTRG.16256.3	+	27529256,27566793,27613420	27529333,27566853,27613926	0.660000
SK_MEL_5_nuclear_fraction	chr3	15341419	15341466	15341450	-	High_confidence	6	7	25	1.842366	3.973661	chr3	15341407	15341757	LTR|ERVL-MaLR|THE1D	+	chr3	15254352	15341394	SH3BP5|NM_001018009.3	-	15254352,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341394	0.600000
SK_MEL_5_nuclear_fraction	chr17	59839198	59839208	59839198	+	RAMPAGE_only	3	3	13	0.958031	3.392747	chr17	59838987	59839290	SINE|Alu|AluSq2	-	chr17	59837930	59842255	VMP1|ENST00000592790.1	+	59837930	59842255	1.000000
SK_MEL_5_nuclear_fraction	chr2	206161041	206161067	206161041	+	RAMPAGE_only	3	3	12	0.884336	2.845351	chr2	206160846	206161079	SINE|tRNA|LFSINE_Vert	-	chr2	206159933	206162839	EEF1B2|ENST00000455150.1	+	206159933,206160556,206161345,206162037,206162488,206162728	206160018,206160710,206161472,206162104,206162614,206162839	0.583333
SK_MEL_5_nuclear_fraction	chr12	9567425	9567446	9567425	+	RAMPAGE_only	33	40	89	6.558824	3.770029	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9558385	9576294	MSTRG.11559.12	+	9558385,9559174,9560109,9560816,9564159,9565091,9567489,9569057,9570765,9571460,9573002,9573465,9574846,9575642,9576117	9558452,9559348,9560191,9562976,9564325,9565303,9567567,9569202,9570892,9571573,9573093,9573534,9574949,9575717,9576294	0.988764
SK_MEL_5_nuclear_fraction	chr2	61178457	61178530	61178496	+	High_confidence	3	3	15	1.105420	3.640224	chr2	61178267	61178502	SINE|Alu|AluSx3	-	chr2	61178377	61186769	AHSA2P|ENST00000642505.1	+	61178377,61181319,61183546,61184711,61185501,61185979,61186445,61186616	61179171,61181405,61183662,61184800,61185618,61186081,61186497,61186769	1.000000
SK_MEL_5_nuclear_fraction	chr9	106278141	106278304	106278141	+	High_confidence	61	74	617	45.469603	7.587419	chr9	106277947	106278267	LINE|RTE-X|L4_C_Mam	+	chr9	106278391	106604795	LINC01505|ENST00000435485.5	+	106278391,106279100,106499486,106500356,106558471,106588376,106603755	106278472,106279190,106499612,106500505,106558583,106588464,106604795	0.508914
SK_MEL_5_nuclear_fraction	chr14	100354256	100354321	100354287	-	High_confidence	2	2	12	0.884336	3.188722	chr14	100354025	100354277	SINE|MIR|MIRb	-	chr14	100334926	100354423	WARS|ENST00000554950.1	-	100334926,100337061,100342397,100343274,100346745,100353686	100335036,100337202,100342571,100343387,100346846,100354423	1.000000
SK_MEL_5_nuclear_fraction	chr7	47793280	47793333	47793280	-	RAMPAGE_only	13	13	46	3.389954	4.397408	chr7	47793280	47793633	LTR|ERVL-MaLR|THE1A	+	chr7	47774651	47948474	PKD1L1|NM_138295.3	-	47774651,47792626,47795988,47800648,47803209,47808246,47809472,47811816,47813120,47813930,47815333,47821075,47827349,47829424,47830039,47831216,47833089,47834338,47834966,47835132,47836920,47839445,47840460,47842961,47844994,47846878,47853126,47854881,47855154,47857604,47858672,47865215,47866418,47873898,47876096,47877488,47880727,47881908,47884597,47885685,47887989,47890541,47893877,47897987,47902378,47904377,47905156,47905842,47908076,47915431,47929203,47931103,47931935,47936845,47940192,47943395,47948396	47775166,47792797,47796150,47800879,47803344,47808387,47809577,47812051,47813293,47814014,47815457,47821186,47827468,47829601,47830124,47831352,47833252,47834385,47835039,47835243,47837094,47839662,47840567,47843169,47845078,47847071,47853227,47855039,47855265,47857832,47858885,47865272,47866614,47874010,47876217,47877631,47880805,47882085,47884657,47886054,47888150,47890763,47894059,47898194,47902511,47904617,47905325,47905962,47908250,47915599,47929526,47931321,47932056,47936958,47940317,47943511,47948474	0.586957
SK_MEL_5_nuclear_fraction	chr13	94515586	94515601	94515586	-	RAMPAGE_only	7	7	18	1.326504	3.794653	chr13	94515561	94515630	LTR|ERVL|LTR33B	-	chr13	94437303	94549413	DCT|NM_001322186.1	-	94437303,94443435,94460090,94462009,94465632,94466557,94468745,94504910,94505512,94549169	94440076,94443637,94460226,94462189,94465799,94466658,94469045,94505072,94505619,94549413	0.666667
SK_MEL_5_nuclear_fraction	chr11	90613521	90613610	90613609	+	RAMPAGE_only	3	3	30	2.210840	3.139572	chr11	90613400	90613770	LINE|L2|L2a	-	chr11	90611142	90614553	MSTRG.10414.1	+	90611142	90614553	0.966667
SK_MEL_5_nuclear_fraction	chr1	1721648	1721676	1721648	-	High_confidence	3	3	8	0.589557	2.807355	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.500000
SK_MEL_5_nuclear_fraction	chr2	29114109	29114192	29114163	+	High_confidence	6	7	62	4.569069	5.135289	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.693548
SK_MEL_5_nuclear_fraction	chr1	235882460	235882485	235882460	-	RAMPAGE_only	2	2	8	0.589557	2.500000	chr1	235882113	235882614	LINE|L2|L2c	-	chr1	235870939	235883616	MSTRG.5399.19	-	235870939,235872660	235872575,235883616	0.875000
SK_MEL_5_nuclear_fraction	chr4	131379753	131379764	131379753	+	High_confidence	107	111	301	22.182091	6.201218	chr4	131379190	131380342	LTR|ERV1|LTR12D	+	chr4	131380012	131528121	LINC02377|ENST00000500169.6	+	131380012,131527229,131528059	131380341,131527288,131528121	0.807309
SK_MEL_5_nuclear_fraction	chr17	76560884	76560896	76560895	+	RAMPAGE_only	4	6	9	0.663252	2.750000	chr17	76560703	76560993	SINE|Alu|AluSp	+	chr17	76558462	76563753	SNHG16|ENST00000587838.1	+	76558462,76561287,76563118	76558600,76561398,76563753	0.777778
SK_MEL_5_nuclear_fraction	chr10	4671520	4671565	4671539	+	High_confidence	15	25	78	5.748183	5.428656	chr10	4671287	4671738	LINE|L1|L1MB7	-	chr10	4671553	4677121	MSTRG.5758.1	+	4671553,4676664	4671648,4677121	0.679487
SK_MEL_5_nuclear_fraction	chr17	59619888	59619923	59619894	+	High_confidence	265	393	1205	88.802060	6.373852	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59667785	MSTRG.25071.4	+	59619923,59644275,59647397,59648239,59651202,59655853,59660390,59661442,59663841,59664786,59666102,59666479,59666796,59667702	59620173,59644495,59647666,59648401,59651316,59656027,59660588,59661643,59663994,59664909,59666240,59666644,59666977,59667785	0.922822
SK_MEL_5_nuclear_fraction	chr4	184343954	184343968	184343967	-	RAMPAGE_only	15	19	48	3.537343	4.954449	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184340755	184353977	LINC02363|ENST00000317596.3	-	184340755,184350088,184353312	184342053,184350278,184353977	0.562500
SK_MEL_5_nuclear_fraction	chr5	85663237	85663264	85663255	+	High_confidence	9	12	51	3.758427	5.142630	chr5	85657593	85663641	LINE|L1|L1PA2	-	chr5	85663231	85664684	AC010595.1|ENST00000507387.1	+	85663231	85664684	0.823529
SK_MEL_5_nuclear_fraction	chr3	123950458	123950469	123950468	-	RAMPAGE_only	3	3	7	0.515863	2.521641	chr3	123950221	123950801	LINE|L1|L1ME3	+	chr3	123946803	123961209	MSTRG.40662.19	-	123946803,123947279,123948690,123948895,123949383,123956354,123961143	123947057,123947319,123948785,123949132,123956115,123956795,123961209	0.714286
SK_MEL_5_nuclear_fraction	chr18	74612784	74612827	74612800	+	RAMPAGE_only	18	19	74	5.453405	5.665651	chr18	74612610	74612804	SINE|MIR|MIR	-	chr18	74597885	75065669	MSTRG.27114.2	+	74597885,74630966,74641007,74781427,74877196,74881035,74889917,74920513,75063149	74597937,74635706,74641122,74781502,74877363,74881119,74890038,74920692,75065669	0.824324
SK_MEL_5_nuclear_fraction	chrX	115017953	115017974	115017953	-	High_confidence	2	3	7	0.515863	2.807355	chrX	115017783	115018061	SINE|Alu|AluSx1	+	chrX	115003974	115017644	IL13RA2|NM_000640.2	-	115003974,115005196,115007931,115009520,115010643,115013768,115014420,115015669,115017175,115017552	115004106,115005315,115008076,115009666,115010828,115013889,115014574,115015821,115017302,115017644	0.714286
SK_MEL_5_nuclear_fraction	chr3	84548120	84548144	84548143	+	High_confidence	4	4	14	1.031725	3.238901	chr3	84544561	84549152	LINE|L1|L1PA16	-	chr3	84548067	84548393	MSTRG.40107.1	+	84548067	84548393	0.500000
SK_MEL_5_nuclear_fraction	chr5	147839183	147839195	147839194	-	High_confidence	8	11	18	1.326504	3.690117	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824571	147839227	MSTRG.47718.2	-	147824571,147828021,147829598,147839097	147824706,147828128,147831768,147839227	0.500000
SK_MEL_5_nuclear_fraction	chr12	31118999	31119017	31119016	-	High_confidence	11	11	37	2.726702	4.557854	chr12	31118893	31119042	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.648649
SK_MEL_5_nuclear_fraction	chr1	36401228	36401279	36401262	+	High_confidence	16	16	79	5.821878	5.323706	chr1	36400550	36401780	LTR|ERV1|LTR2752	-	chr1	36401276	36408211	MSTRG.1279.1	+	36401276,36407379	36401418,36408211	0.506329
SK_MEL_5_nuclear_fraction	chr7	122802348	122802351	122802348	-	RAMPAGE_only	7	7	12	0.884336	3.277613	chr7	122802319	122802451	LINE|L2|L2b	+	chr7	122320002	122886357	CADPS2|ENST00000449022.6	-	122320002,122325476,122345573,122360787,122360929,122379367,122387025,122388582,122393195,122393440,122407539,122414067,122416060,122438340,122441511,122451373,122471374,122474380,122480851,122490080,122491311,122513248,122554549,122581178,122615180,122621480,122629247,122663236,122736954,122885998	122320338,122325581,122345681,122360820,122361013,122379442,122387173,122388738,122393315,122393582,122407696,122414076,122416164,122438464,122441575,122451475,122471562,122474517,122480860,122490281,122491420,122513315,122554689,122581290,122615299,122621717,122629328,122663569,122737068,122886357	0.500000
SK_MEL_5_nuclear_fraction	chr9	5894619	5894692	5894691	+	RAMPAGE_only	11	15	62	4.569069	5.290980	chr9	5894274	5894902	LTR|ERVL|LTR50	-	chr9	5890907	5934901	MSTRG.57909.4	+	5890907,5892449,5906884,5908639,5916012,5931765,5934547	5890936,5897653,5906998,5908834,5916195,5931826,5934901	0.967742
SK_MEL_5_nuclear_fraction	chr2	139410956	139410957	139410956	+	High_confidence	454	529	612	45.101129	5.376091	chr2	139410158	139411367	LTR|ERV1|LTR12C	+	chr2	139410946	139477747	MSTRG.32640.1	+	139410946,139469774,139477491	139411571,139469984,139477747	0.960784
SK_MEL_5_nuclear_fraction	chr3	38235944	38235957	38235944	+	High_confidence	2	3	8	0.589557	2.750000	chr3	38235960	38236479	LINE|L1|HAL1	+	chr3	38236660	38251412	OXSR1|ENST00000467900.1	+	38236660,38242742,38246074,38247667,38249965,38251402	38236961,38242778,38246221,38247732,38250018,38251412	0.500000
SK_MEL_5_nuclear_fraction	chr6	125219579	125219594	125219582	+	High_confidence	8	12	30	2.210840	3.821296	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.866667
SK_MEL_5_nuclear_fraction	chr6	26956598	26956634	26956598	-	High_confidence	5	5	26	1.916061	4.026987	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.500000
SK_MEL_5_nuclear_fraction	chr4	142560709	142560755	142560709	-	High_confidence	184	191	607	44.732656	6.959559	chr4	142560371	142560916	LTR|ERVL|MLT2B3	-	chr4	142086178	142560669	INPP4B|ENST00000510812.5	-	142086178,142108092,142112541,142122127,142123291,142124587,142145839,142160357,142173631,142193086,142208424,142208895,142237863,142260491,142270662,142305457,142314711,142402937,142405205,142429172,142431168,142462662,142560456	142086256,142108190,142112682,142122245,142123415,142124760,142145996,142160561,142173809,142193195,142208529,142209026,142238011,142260564,142270774,142305537,142314762,142403054,142405324,142429217,142431385,142462726,142560669	0.780890
SK_MEL_5_nuclear_fraction	chr17	7313785	7313800	7313799	-	High_confidence	5	5	9	0.663252	2.750000	chr17	7313740	7313844	LINE|L2|L2c	+	chr17	7312658	7313757	GPS2|ENST00000573807.5	-	7312658,7313028,7313211	7312839,7313124,7313757	0.888889
SK_MEL_5_nuclear_fraction	chr17	68248557	68248587	68248557	+	High_confidence	2	2	14	1.031725	3.039149	chr17	68248543	68248580	LINE|L2|L2c	-	chr17	68248534	68256926	AMZ2|ENST00000585050.5	+	68248534,68249010,68250359,68250793,68251049,68256813	68248705,68249096,68250470,68250967,68251178,68256926	0.785714
SK_MEL_5_nuclear_fraction	chr7	22818310	22818360	22818359	-	High_confidence	84	85	224	16.507603	5.344888	chr7	22818277	22818576	SINE|Alu|AluSz	-	chr7	22812970	22818335	TOMM7|ENST00000483581.1	-	22812970,22817999	22813185,22818335	0.870536
SK_MEL_5_nuclear_fraction	chr8	12796480	12796566	12796540	-	High_confidence	58	59	339	24.982488	5.029306	chr8	12796147	12797467	LTR|ERV1|LTR12C	+	chr8	12765702	12796719	MSTRG.55408.2	-	12765702,12788331,12790756	12778356,12788444,12796719	0.988201
SK_MEL_5_nuclear_fraction	chr12	21214631	21214702	21214701	+	RAMPAGE_only	18	27	129	9.506611	5.964629	chr12	21209060	21215087	LINE|L1|L1PA2	-	chr12	21222341	21270301	MSTRG.11827.18	+	21222341,21224721,21267650,21269646	21222364,21224839,21267771,21270301	0.604651
SK_MEL_5_nuclear_fraction	chr22	22287021	22287099	22287078	-	High_confidence	3	3	23	1.694977	4.106603	chr22	22287010	22287628	LINE|L1|L1MEd	-	chr22	22283927	22287220	AC245060.5|ENST00000610778.1	-	22283927	22287220	0.869565
SK_MEL_5_nuclear_fraction	chr5	27720727	27720759	27720758	-	RAMPAGE_only	4	4	11	0.810641	3.277613	chr5	27720739	27720879	DNA?|DNA?|Eulor10	+	chr5	27705622	27723809	MSTRG.45540.2	-	27705622,27719699,27723728	27711380,27721481,27723809	1.000000
SK_MEL_5_nuclear_fraction	chr3	165572325	165572332	165572331	+	RAMPAGE_only	31	35	53	3.905817	5.133018	chr3	165572331	165578354	LINE|L1|L1PA3	+	chr3	165548837	165655423	LINC01322|ENST00000496693.1	+	165548837,165580858,165616438,165646920,165654108,165655180	165549149,165581054,165616512,165647083,165654195,165655423	0.622642
SK_MEL_5_nuclear_fraction	chr8	83447697	83447733	83447697	+	RAMPAGE_only	6	6	16	1.179114	3.640224	chr8	83447142	83453169	LINE|L1|L1PA2	+	chr8	83403757	83452973	MSTRG.56635.3	+	83403757,83447126	83416196,83452973	0.937500
SK_MEL_5_nuclear_fraction	chr1	32816725	32816767	32816766	+	High_confidence	7	7	20	1.473893	4.142664	chr1	32816717	32816919	LINE|L2|L2c	+	chr1	32816766	32858875	MSTRG.1141.1	+	32816766,32825312,32826097,32827992,32829963,32853078,32855923	32816982,32825429,32826930,32828081,32830067,32853166,32858875	0.800000
SK_MEL_5_nuclear_fraction	chr11	65431854	65431897	65431889	+	RAMPAGE_only	9	11	39	2.874092	4.629249	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.974359
SK_MEL_5_nuclear_fraction	chr7	32669230	32669248	32669240	-	RAMPAGE_only	2	2	8	0.589557	2.807355	chr7	32669162	32669692	LTR|ERVL|MER76	+	chr7	32580938	32719168	DPY19L1P1|NR_036680.1	-	32580938,32581571,32585976,32590878,32593183,32620403,32621012,32623360,32632542,32635251,32639273,32655986,32675931,32676787,32678992,32716717,32719135	32581313,32581664,32586136,32591004,32593306,32620484,32621072,32623439,32632620,32635351,32639365,32656044,32676025,32676908,32679130,32716809,32719168	0.500000
SK_MEL_5_nuclear_fraction	chr11	13415210	13415227	13415210	-	High_confidence	6	6	11	0.810641	2.921928	chr11	13415107	13415246	SINE|Alu|AluSx3	-	chr11	13388000	13415199	MSTRG.8608.2	-	13388000,13403167,13413529,13415154	13389141,13405856,13413650,13415199	0.545455
SK_MEL_5_nuclear_fraction	chr13	113815608	113815617	113815608	+	High_confidence	13	14	22	1.621282	3.784184	chr13	113815414	113815766	LTR|ERVL-MaLR|THE1A	+	chr13	113815548	113850350	MSTRG.15979.8	+	113815548,113833491,113838076	113815691,113834764,113850350	0.636364
SK_MEL_5_nuclear_fraction	chr9	5906646	5906653	5906646	+	RAMPAGE_only	6	6	15	1.105420	3.240224	chr9	5906614	5906797	SINE|MIR|MIRb	-	chr9	5892510	5934901	MSTRG.57909.7	+	5892510,5897556,5906884,5908639,5931768	5892551,5897653,5906998,5916195,5934901	0.666667
SK_MEL_5_nuclear_fraction	chr4	122913317	122913320	122913317	-	High_confidence	79	90	139	10.243557	6.271759	chr4	122913129	122913485	LTR|ERVL-MaLR|MLT1A0	-	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	0.669065
SK_MEL_5_nuclear_fraction	chr2	33757543	33757614	33757576	+	RAMPAGE_only	2	2	10	0.736947	2.721928	chr2	33757502	33758403	LINE|L1|HAL1b	+	chr2	33706885	33761717	MSTRG.30617.3	+	33706885,33757356	33706953,33761717	0.800000
SK_MEL_5_nuclear_fraction	chr16	90091995	90092023	90092020	-	High_confidence	3	3	12	0.884336	3.277613	chr16	90091858	90092142	SINE|Alu|AluSx1	+	chr16	90067823	90092111	MSTRG.23000.9	-	90067823,90074915,90091606	90070052,90075023,90092111	0.500000
SK_MEL_5_nuclear_fraction	chr12	19243265	19243297	19243265	+	RAMPAGE_only	3	3	8	0.589557	2.750000	chr12	19243242	19243414	SINE|MIR|MIRb	+	chr12	19237829	19307560	MSTRG.11767.15	+	19237829,19253939,19255044,19257432,19260948,19265749,19269769,19274515,19283279,19287472,19306398	19238929,19254023,19255165,19257537,19261021,19265850,19269885,19274983,19283745,19287556,19307560	0.750000
SK_MEL_5_nuclear_fraction	chr11	65434368	65434446	65434368	+	RAMPAGE_only	8	8	23	1.694977	4.277613	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.956522
SK_MEL_5_nuclear_fraction	chr22	40668872	40668878	40668872	-	High_confidence	8	9	15	1.105420	3.664498	chr22	40668729	40668953	LTR|ERVL-MaLR|MSTA	+	chr22	40659600	40668856	MSTRG.38001.1	-	40659600,40668320	40660965,40668856	0.533333
SK_MEL_5_nuclear_fraction	chr7	104760011	104760041	104760011	-	RAMPAGE_only	3	3	8	0.589557	2.521641	chr7	104759749	104759985	SINE|MIR|MIRb	-	chr7	104738597	104804084	MSTRG.53976.2	-	104738597,104744049,104752714,104761473,104785219,104798336,104802838,104803955	104738955,104744180,104759822,104761580,104786581,104800069,104802963,104804084	0.875000
SK_MEL_5_nuclear_fraction	chr11	90869970	90870179	90869970	+	RAMPAGE_only	3	3	43	3.168870	3.934715	chr11	90868476	90870776	DNA|TcMar-Tigger|Tigger1	+	chr11	90626627	90874120	MSTRG.10407.7	+	90626627,90844879,90852615,90854969	90629324,90844957,90852707,90874120	0.976744
SK_MEL_5_nuclear_fraction	chr7	104804473	104804489	104804473	-	High_confidence	4	7	10	0.736947	3.121928	chr7	104804405	104804953	LTR|ERVL-MaLR|MLT1F2	+	chr7	104796515	104804107	LHFPL3-AS1|ENST00000434579.6	-	104796515,104798336,104799817,104802838,104803955	104796949,104798407,104800069,104802963,104804107	0.900000
SK_MEL_5_nuclear_fraction	chr17	41871718	41871746	41871745	-	RAMPAGE_only	2	2	6	0.442168	2.584963	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41866916	41918962	ACLY|ENST00000590151.5	-	41866916,41868708,41869042,41869473,41871688,41872031,41873810,41878102,41878796,41883121,41884192,41886111,41887598,41892278,41893032,41896619,41897748,41898630,41901695,41904728,41905521,41906527,41907441,41908988,41909509,41910221,41912419,41913714,41918879	41867904,41868785,41869125,41869587,41871832,41872182,41873965,41878196,41878924,41883232,41884274,41886308,41887703,41892447,41893174,41896649,41897839,41898785,41901813,41904790,41905658,41906646,41907572,41909068,41909700,41910284,41912542,41913900,41918962	1.000000
SK_MEL_5_nuclear_fraction	chr10	115240007	115240026	115240007	+	RAMPAGE_only	3	3	12	0.884336	3.418296	chr10	115239530	115240236	LINE|L1|L1M4b	-	chr10	115093858	115946742	ATRNL1|ENST00000650603.1	+	115093858,115120184,115121698,115127592,115129326,115160039,115165557,115171036,115215696,115241570,115265192,115266796,115268325,115281354,115286215,115300033,115301854,115315517,115334281,115394658,115426249,115461940,115467173,115469171,115519262,115549457,115727247,115847876,115931527,115944657	115094043,115120268,115121812,115127721,115129535,115160214,115165645,115171292,115215880,115241725,115265277,115267005,115268444,115281487,115286397,115300247,115302043,115315736,115334419,115394752,115426302,115462035,115467252,115469329,115519324,115549536,115727355,115847991,115931653,115946742	0.583333
SK_MEL_5_nuclear_fraction	chr3	101949161	101949162	101949161	+	High_confidence	39	39	46	3.389954	3.992289	chr3	101948967	101949326	LTR|ERVL-MaLR|THE1B	+	chr3	101949203	101949580	MSTRG.40264.1	+	101949203	101949580	0.717391
SK_MEL_5_nuclear_fraction	chr12	28792769	28793602	28793456	-	RAMPAGE_only	186	199	917	67.577999	6.610175	chr12	28793323	28793420	SINE|MIR|MIR	-	chr12	28785953	28794936	MSTRG.12054.7	-	28785953,28791601,28794303	28791563,28793745,28794936	0.990185
SK_MEL_5_nuclear_fraction	chr16	81181316	81181341	81181330	-	High_confidence	49	50	102	7.516855	5.481646	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.784314
SK_MEL_5_nuclear_fraction	chr7	30563022	30563114	30563042	+	High_confidence	39	40	319	23.508595	6.789285	chr7	30563019	30563431	LINE|CR1|L3	+	chr7	30563015	30583349	MSTRG.52480.4	+	30563015,30568661,30577722	30563498,30568701,30583349	0.608150
SK_MEL_5_nuclear_fraction	chr7	134432378	134432458	134432378	-	High_confidence	8	8	60	4.421679	4.973988	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.516667
SK_MEL_5_nuclear_fraction	chr18	976383	976466	976418	+	High_confidence	9	12	85	6.264046	5.370523	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976588	1183959	MSTRG.26047.1	+	976588,1133842,1137813,1159178,1162814,1165093,1183829	976895,1133952,1137864,1159398,1162853,1165185,1183959	0.658824
SK_MEL_5_nuclear_fraction	chr12	70332303	70332313	70332303	+	High_confidence	2	2	9	0.663252	2.500000	chr12	70332171	70332325	LINE|L2|L2a	-	chr12	70332397	70338686	CNOT2|ENST00000550155.5	+	70332397,70335437,70337388,70338442,70338665	70332846,70335563,70337513,70338563,70338686	0.555556
SK_MEL_5_nuclear_fraction	chr12	28791342	28791387	28791374	-	RAMPAGE_only	2	2	12	0.884336	3.459432	chr12	28791271	28791563	LTR|ERVL|MLT2B4	+	chr12	28785953	28794936	MSTRG.12054.7	-	28785953,28791601,28794303	28791563,28793745,28794936	0.833333
SK_MEL_5_nuclear_fraction	chr5	172958918	172958919	172958918	+	High_confidence	16	16	24	1.768672	3.177694	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	1.000000
SK_MEL_5_nuclear_fraction	chr20	35546666	35546697	35546666	+	RAMPAGE_only	5	5	18	1.326504	3.007196	chr20	35546325	35546964	LINE|L2|L2	-	chr20	35542115	35556432	MSTRG.35536.10	+	35542115,35542322,35542512,35542821,35545666,35548508,35548807,35555043,35556032,35556206	35542185,35542393,35542600,35544302,35547505,35548674,35548865,35555075,35556129,35556432	0.944444
SK_MEL_5_nuclear_fraction	chr3	105998467	105998475	105998467	+	High_confidence	56	74	176	12.970259	6.335547	chr3	105996221	105998695	LINE|L1|L1MA2	-	chr3	105998809	105999529	MSTRG.40298.1	+	105998809	105999529	0.596591
SK_MEL_5_nuclear_fraction	chr19	57512927	57512928	57512927	+	RAMPAGE_only	6	6	6	0.442168	2.584963	chr19	57512615	57513045	LTR|ERVK|LTR3B_	+	chr19	57499938	57518404	ZNF773|ENST00000599847.5	+	57499938,57504656,57505301,57508519,57513021	57500113,57504786,57505400,57508564,57518404	1.000000
SK_MEL_5_nuclear_fraction	chr7	48155225	48155241	48155225	+	RAMPAGE_only	2	2	7	0.515863	2.521641	chr7	48154824	48155256	LINE|L1|L1MEf	-	chr7	48171457	48272995	ABCA13|ENST00000417403.5	+	48171457,48192958,48198236,48219353,48221280,48227261,48229824,48234017,48239240,48240866,48242987,48244575,48245511,48245862,48248238,48249211,48268979,48271786	48171552,48193052,48198360,48219505,48221309,48227425,48229955,48234227,48239405,48241066,48243084,48244703,48245612,48246030,48248444,48249351,48269094,48272995	0.571429
SK_MEL_5_nuclear_fraction	chrX	21765634	21765647	21765646	-	RAMPAGE_only	4	8	15	1.105420	2.985228	chrX	21765481	21765825	LTR|ERVL-MaLR|THE1B	-	chrX	21706337	21770832	MSTRG.60701.6	-	21706337,21737548,21743749,21754245,21757941,21766271	21706394,21737697,21743836,21754302,21761942,21770832	0.533333
SK_MEL_5_nuclear_fraction	chr2	237546289	237546313	237546289	+	High_confidence	3	3	14	1.031725	3.807355	chr2	237545882	237546379	LTR|ERV1|MER4A	-	chr2	237546404	237553843	MLPH|ENST00000477457.1	+	237546404,237549220,237552336,237553565	237546683,237549278,237552437,237553843	0.928571
SK_MEL_5_nuclear_fraction	chr3	195356169	195356215	195356211	-	High_confidence	54	61	165	12.159618	4.742937	chr3	195355936	195357733	LINE|L1|L1M1	+	chr3	195333081	195356212	ACAP2|ENST00000423531.3	-	195333081,195336931,195342470,195345258,195356067	195333123,195336976,195342654,195345317,195356212	0.812121
SK_MEL_5_nuclear_fraction	chr7	29538432	29538435	29538432	-	RAMPAGE_only	5	5	11	0.810641	2.845351	chr7	29538168	29540969	LINE|L1|L1MA2	+	chr7	29514224	29563670	AC007255.1|ENST00000450540.2	-	29514224,29563387	29515317,29563670	0.545455
SK_MEL_5_nuclear_fraction	chr10	126662322	126662372	126662347	-	RAMPAGE_only	2	2	10	0.736947	2.947703	chr10	126661625	126662601	LINE|L1|L1MEc	-	chr10	126534403	126670446	MSTRG.8049.13	-	126534403,126608601,126646564,126656142,126670240	126534472,126608753,126646637,126663099,126670446	0.900000
SK_MEL_5_nuclear_fraction	chr15	69080849	69080891	69080890	+	High_confidence	14	14	51	3.758427	4.751272	chr15	69080204	69081232	LINE|L1|L1M7	-	chr15	69080878	69099987	AC027088.2|ENST00000559870.2	+	69080878,69081229,69090914,69097583,69099595	69080965,69081376,69091114,69097673,69099987	0.607843
SK_MEL_5_nuclear_fraction	chrX	115201091	115201125	115201091	-	RAMPAGE_only	2	2	11	0.810641	3.277613	chrX	115200951	115201313	LTR|ERVL-MaLR|THE1B	-	chrX	115110615	115234072	LRCH2|ENST00000317135.12	-	115110615,115122526,115122759,115123079,115123944,115126842,115130154,115149826,115150021,115156601,115163675,115165404,115165557,115165840,115166254,115170298,115179426,115179645,115184410,115188225,115233692	115113335,115122604,115122897,115123192,115124002,115126893,115130199,115149943,115150070,115156667,115163783,115165463,115165655,115165952,115166342,115170432,115179563,115179751,115184537,115188370,115234072	1.000000
SK_MEL_5_nuclear_fraction	chr17	60305228	60305262	60305244	-	High_confidence	76	76	360	26.530076	6.797818	chr17	60305106	60305535	LTR|ERVL-MaLR|MSTB	-	chr17	60213580	60305228	MSTRG.25112.9	-	60213580,60214619,60219669,60222408,60223410,60226038,60236137,60252380,60255174,60265411,60265975,60269449,60271349,60288522,60294682,60301598,60305142	60213662,60214774,60219787,60222549,60223586,60226231,60236240,60252442,60255258,60265474,60266091,60269557,60271481,60288682,60294801,60301704,60305228	0.638889
SK_MEL_5_nuclear_fraction	chr21	10327231	10327772	10327587	-	RAMPAGE_only	16	17	423	31.172839	6.409125	chr21	10326479	10327674	LINE|L1|L1PA16	-	chr21	10325559	10342713	MSTRG.36198.1	-	10325559	10342713	0.995272
SK_MEL_5_nuclear_fraction	chr9	28922049	28922074	28922049	-	High_confidence	5	5	13	0.958031	3.180833	chr9	28921703	28922191	LTR|ERVL|LTR33	+	chr9	28921412	28921976	MSTRG.58142.1	-	28921412,28921933	28921811,28921976	0.846154
SK_MEL_5_nuclear_fraction	chr3	69237157	69237180	69237179	-	RAMPAGE_only	10	10	32	2.358229	4.438067	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69170110	69305669	MSTRG.39909.3	-	69170110,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69195230,69196254,69196899,69198697,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69305628	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195141,69195364,69196396,69197038,69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69305669	0.843750
SK_MEL_5_nuclear_fraction	chr9	127451068	127451128	127451127	-	High_confidence	9	10	41	3.021481	4.245752	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447679	127451373	MSTRG.59762.4	-	127447679,127447876,127448336,127449280,127449609,127450730	127447726,127447989,127448423,127449362,127449708,127451373	0.926829
SK_MEL_5_nuclear_fraction	chr12	110172764	110172800	110172788	+	High_confidence	69	88	301	22.182091	5.964413	chr12	110172360	110173979	Retroposon|SVA|SVA_D	+	chr12	110171894	110218560	MSTRG.13751.8	+	110171894,110172579,110180421,110190919,110192616,110203863,110205442,110205594,110209170,110218043	110172086,110173031,110180571,110191048,110192706,110203950,110205514,110205680,110209216,110218560	0.976744
SK_MEL_5_nuclear_fraction	chr5	70401590	70401602	70401590	+	RAMPAGE_only	3	3	9	0.663252	2.503258	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	1.000000
SK_MEL_5_nuclear_fraction	chr7	104804080	104804110	104804098	-	High_confidence	12095	13428	36622	2698.845684	8.464667	chr7	104804006	104804386	LTR|ERVL-MaLR|MLT1K	-	chr7	104798997	104804092	LHFPL3-AS1|NR_034142.1	-	104798997,104802838,104803955	104800069,104802963,104804092	0.747665
SK_MEL_5_nuclear_fraction	chrX	13932295	13932311	13932310	-	High_confidence	47	51	91	6.706214	5.790121	chrX	13932211	13932568	LINE|L2|L2b	+	chrX	13675833	13932095	MSTRG.60569.1	-	13675833,13930399	13675869,13932095	0.791209
SK_MEL_5_nuclear_fraction	chr17	67239799	67239844	67239799	-	High_confidence	5	5	27	1.989756	4.403856	chr17	67239792	67240017	SINE|MIR|MIRb	+	chr17	67070443	67239800	MSTRG.25325.2	-	67070443,67086828,67107168,67108491,67109115,67114323,67120404,67122969,67123962,67128650,67129866,67135969,67137930,67145742,67148568,67149866,67151045,67160260,67160896,67166477,67167462,67178658,67188318,67189588,67190156,67193966,67195418,67201128,67203318,67215898,67218594,67239432	67078586,67087081,67107685,67108726,67109686,67114403,67120612,67123160,67124014,67128855,67129983,67136198,67138114,67145890,67148714,67149985,67151224,67160362,67161076,67166608,67167796,67178926,67188616,67189696,67190355,67194042,67195470,67201185,67203443,67215935,67218822,67239800	0.814815
SK_MEL_5_nuclear_fraction	chr7	101217578	101217595	101217578	-	High_confidence	10	10	30	2.210840	4.773557	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
SK_MEL_5_nuclear_fraction	chr4	170088802	170088827	170088802	-	High_confidence	5	5	13	0.958031	3.700440	chr4	170088681	170089067	LTR|ERVL-MaLR|MLT1A1	+	chr4	170070476	170088430	AADAT|ENST00000505906.1	-	170070476,170073135,170078508,170087115,170088395	170070652,170073345,170078583,170087248,170088430	0.615385
SK_MEL_5_nuclear_fraction	chr12	92803010	92803045	92803044	-	RAMPAGE_only	12	18	67	4.937542	5.313111	chr12	92802868	92803021	SINE|MIR|MIR3	-	chr12	92772511	92929306	MSTRG.13320.2	-	92772511,92776843,92777542,92777940,92779114,92780279,92781949,92798891,92800880,92801599,92802403,92809016,92811278,92812979,92816199,92819307,92826165,92827911,92832511,92842464,92851110,92852174,92852911,92853914,92857274,92857430,92864859,92891628,92929042	92776133,92776942,92777663,92778179,92779300,92780411,92788049,92799086,92800921,92801701,92802734,92809156,92811434,92813093,92816400,92819511,92826285,92828061,92832850,92842581,92851266,92852296,92853025,92853954,92857340,92857485,92864987,92891721,92929306	0.925373
SK_MEL_5_nuclear_fraction	chr13	87811246	87811266	87811254	-	High_confidence	23	42	103	7.590550	6.122182	chr13	87810512	87811351	LTR|ERV1|LTR1A2	-	chr13	87807633	87811232	AL445647.1|ENST00000606221.1	-	87807633	87811232	0.961165
SK_MEL_5_nuclear_fraction	chr4	73806538	73806539	73806538	-	RAMPAGE_only	7	7	9	0.663252	2.725481	chr4	73805101	73807113	LINE|L1|L1PA15	+	chr4	73776176	73776427	MSTRG.43426.1	-	73776176	73776427	0.666667
SK_MEL_5_nuclear_fraction	chr12	102313277	102313350	102313277	+	RAMPAGE_only	6	6	37	2.726702	4.672140	chr12	102307781	102313768	LINE|L1|L1PA2	-	chr12	102197584	102402596	HELLPAR|ENST00000626826.1	+	102197584	102402596	0.918919
SK_MEL_5_nuclear_fraction	chr19	35399340	35399343	35399342	+	High_confidence	3	5	8	0.589557	2.750000	chr19	35399184	35399804	LTR|ERV1|MER49	+	chr19	35399510	35409600	LINC01531|ENST00000602468.5	+	35399510,35406584,35408998,35409285	35399657,35406697,35409151,35409600	0.500000
SK_MEL_5_nuclear_fraction	chr11	65432715	65432734	65432715	+	RAMPAGE_only	4	4	8	0.589557	2.750000	chr11	65432693	65433229	LINE|L1|L1PB3	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
SK_MEL_5_nuclear_fraction	chr7	92579316	92579334	92579322	-	RAMPAGE_only	2	2	8	0.589557	2.807355	chr7	92579142	92579278	SINE|Alu|FLAM_C	-	chr7	92565507	92577717	FAM133B|ENST00000494079.1	-	92565507,92569822,92575770,92577102,92577654	92566061,92569915,92575821,92577195,92577717	0.625000
SK_MEL_5_nuclear_fraction	chr13	98180421	98180422	98180421	+	RAMPAGE_only	25	28	31	2.284534	4.123231	chr13	98180072	98180468	LTR|ERVL-MaLR|MSTB	-	chr13	98177816	98384844	FARP1|ENST00000598389.5	+	98177816,98213219,98343761,98365394,98368116,98377820,98384729	98177929,98213413,98343866,98365437,98368195,98377918,98384844	0.838710
SK_MEL_5_nuclear_fraction	chr1	186849371	186849382	186849371	+	RAMPAGE_only	1	1	6	0.442168	2.584963	chr1	186849189	186849488	LINE|L2|L2b	-	chr1	186854285	186939230	PLA2G4A|ENST00000466600.1	+	186854285,186870434,186893010,186894097,186906964,186911247,186939007	186854387,186870516,186893159,186894211,186907002,186911389,186939230	0.500000
SK_MEL_5_nuclear_fraction	chr9	120471968	120472114	120472113	-	RAMPAGE_only	7	7	49	3.611038	4.274940	chr9	120471976	120472122	LINE|L1|L1ME4a	-	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.938776
SK_MEL_5_nuclear_fraction	chr6	3247375	3247377	3247375	-	High_confidence	89	127	160	11.791145	6.293989	chr6	3247154	3247330	LINE|L1|L1ME3A	-	chr6	3153668	3247933	MSTRG.48414.3	-	3153668,3225492,3226158,3226560,3243967	3154604,3225811,3226269,3226669,3247933	0.912500
SK_MEL_5_nuclear_fraction	chr8	13004148	13004212	13004211	+	RAMPAGE_only	10	10	34	2.505618	4.663910	chr8	13003726	13005016	LINE|L1|L1M1	+	chr8	12951634	13026165	MSTRG.55413.6	+	12951634,12990833,13006201,13021007	12952358,12991031,13012793,13026165	0.735294
SK_MEL_5_nuclear_fraction	chr6	57961631	57961648	57961647	+	High_confidence	17	17	31	2.284534	4.053236	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961656	58096507	AL445250.1|ENST00000641829.1	+	57961656,57962180,57965516,57971594,58027671,58043434,58091903,58095770	57961742,57962248,57965743,57971656,58027723,58043527,58092113,58096507	0.677419
SK_MEL_5_nuclear_fraction	chr5	149905155	149905189	149905188	-	RAMPAGE_only	4	5	21	1.547588	3.826875	chr5	149904974	149905604	LINE|L2|L2c	+	chr5	149857954	149944793	PDE6A|ENST00000617647.4	-	149857954,149859891,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647,149907311,149914942,149921634,149931027,149944199	149858530,149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149903695,149907378,149915007,149921709,149931168,149944793	0.809524
SK_MEL_5_nuclear_fraction	chr6	10434303	10434396	10434337	-	High_confidence	4	6	23	1.694977	3.588354	chr6	10434122	10434400	LINE|L2|L2a	-	chr6	10427783	10434495	MSTRG.48549.1	-	10427783,10433027	10430313,10434495	0.956522
SK_MEL_5_nuclear_fraction	chr17	18538864	18538947	18538946	-	RAMPAGE_only	2	2	13	0.958031	3.546594	chr17	18538875	18540998	LINE|L1|L1PA11	+	chr17	18519490	18625608	MSTRG.23672.23	-	18519490,18532505,18532711,18543672,18551505,18553152,18553972,18579656,18582657,18583340,18587665,18594720,18595147,18603603,18605779,18607896,18610043,18622498,18625103	18519674,18532597,18542187,18543715,18551715,18553373,18554266,18580610,18582786,18583523,18587879,18594862,18595181,18603740,18606619,18607970,18610292,18622569,18625608	1.000000
SK_MEL_5_nuclear_fraction	chr12	1166314	1166317	1166314	+	RAMPAGE_only	10	11	20	1.473893	3.721612	chr12	1166120	1166479	LTR|ERVL-MaLR|THE1B	+	chr12	1083572	1244956	ERC1|ENST00000536573.6	+	1083572,1104749,1110191,1112214,1115865,1141619,1180539,1181924,1183280,1189858,1236768,1244542	1083580,1104824,1110347,1112307,1116033,1141787,1180677,1182065,1183421,1190052,1236904,1244956	0.800000
SK_MEL_5_nuclear_fraction	chr20	8600707	8600739	8600719	+	High_confidence	5	5	26	1.916061	3.979098	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.576923
SK_MEL_5_nuclear_fraction	chr12	119868987	119869113	119868997	-	RAMPAGE_only	124	148	718	52.912763	6.158264	chr12	119868893	119868972	SINE|MIR|MIRb	-	chr12	119685790	119877288	CIT|ENST00000261833.11	-	119685790,119690150,119697658,119697975,119700744,119701623,119701849,119704362,119708178,119710250,119710539,119712177,119712590,119713202,119713467,119714196,119718244,119718698,119720477,119721308,119728501,119730494,119734163,119735159,119742410,119752049,119757370,119758590,119760938,119767086,119772769,119775785,119776357,119776671,119782517,119783907,119784959,119803205,119822819,119825164,119832770,119834085,119850173,119857522,119869059,119876072,119877248	119688255,119690454,119697838,119698054,119700825,119701752,119701958,119704455,119708318,119710386,119710620,119712347,119712695,119713294,119713648,119714334,119718409,119718861,119720585,119721449,119728606,119730630,119734357,119735357,119742464,119752247,119757545,119758700,119761055,119767182,119772910,119775839,119776408,119776842,119782637,119784051,119785065,119803389,119822973,119825368,119832864,119834228,119850275,119857698,119869201,119876181,119877288	0.972145
SK_MEL_5_nuclear_fraction	chr7	119704491	119704506	119704493	-	RAMPAGE_only	3	5	10	0.736947	2.641604	chr7	119704380	119704678	LINE|L1|L1MCb	-	chr7	119698873	119713774	MSTRG.54298.6	-	119698873,119713665	119704972,119713774	0.900000
SK_MEL_5_nuclear_fraction	chr8	134799499	134799546	134799545	-	High_confidence	4	4	19	1.400198	3.905765	chr8	134799524	134799743	SINE|MIR|MIR	-	chr8	134792019	134800518	MSTRG.57468.2	-	134792019,134796377	134796340,134800518	0.947368
SK_MEL_5_nuclear_fraction	chr14	50321238	50321263	50321262	+	RAMPAGE_only	2	2	8	0.589557	2.807355	chr14	50321258	50321358	SINE|MIR|MIR3	-	chr14	50312640	50334907	ATP5S|ENST00000311459.11	+	50312640,50321482,50322510,50323944,50325608	50313060,50321594,50322719,50324116,50334907	0.500000
SK_MEL_5_nuclear_fraction	chr7	30564114	30564137	30564114	-	High_confidence	4	4	8	0.589557	2.750000	chr7	30563654	30564076	LTR|ERVL-MaLR|MLT1C	-	chr7	30533241	30563998	MSTRG.52469.22	-	30533241,30550635,30552099,30561465,30562741	30533413,30550781,30552179,30562128,30563998	0.750000
SK_MEL_5_nuclear_fraction	chr5	140700445	140700452	140700445	+	High_confidence	268	300	464	34.194320	4.808002	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.939655
SK_MEL_5_nuclear_fraction	chr2	75871876	75871925	75871924	+	High_confidence	11	15	69	5.084931	5.506934	chr2	75871689	75872461	LTR|ERV1|LTR17	+	chr2	75872126	75879878	MSTRG.31597.1	+	75872126,75879069	75872492,75879878	0.579710
SK_MEL_5_nuclear_fraction	chr20	30611625	30611660	30611634	-	High_confidence	12	13	59	4.347985	4.197445	chr20	30611589	30611771	LTR|ERVL|LTR33	+	chr20	30610212	30611334	MSTRG.35303.1	-	30610212,30610821	30610395,30611334	0.813559
SK_MEL_5_nuclear_fraction	chr1	185311913	185311915	185311913	-	RAMPAGE_only	5	8	12	0.884336	2.855389	chr1	185311707	185312047	LINE|L2|L2c	+	chr1	185297014	185317273	IVNS1ABP|ENST00000459929.5	-	185297014,185299709,185299998,185300216,185300436,185300971,185301433,185305535,185306484,185307013,185307488,185308799,185309002,185309382,185311094,185316952	185298288,185299883,185300130,185300343,185300558,185301196,185301563,185305643,185306625,185307139,185307662,185308875,185309172,185309511,185311322,185317273	0.583333
SK_MEL_5_nuclear_fraction	chr11	2972358	2972359	2972358	-	RAMPAGE_only	5	5	7	0.515863	2.521641	chr11	2972339	2972686	LINE|L1|L1M5	+	chr11	2971449	2989268	NAP1L4|ENST00000530064.5	-	2971449,2972101,2976023,2978283,2979206,2983745,2989128	2971534,2972243,2976123,2978342,2979237,2983813,2989268	0.857143
SK_MEL_5_nuclear_fraction	chr19	17336685	17336689	17336685	+	High_confidence	10	11	16	1.179114	3.373557	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.812500
SK_MEL_5_nuclear_fraction	chr6	127481982	127482000	127481982	-	RAMPAGE_only	3	3	6	0.442168	2.584963	chr6	127481731	127482268	LTR|ERV1|MER41A	+	chr6	127450045	127516104	MSTRG.50939.8	-	127450045,127453846,127473079,127482912,127512890,127514822,127515513	127450352,127454101,127476468,127482984,127513049,127515047,127516104	0.666667
SK_MEL_5_nuclear_fraction	chr11	102555072	102555127	102555126	-	High_confidence	36	38	256	18.865832	6.200250	chr11	102554936	102555606	LTR|ERV1|LTR48	+	chr11	102553675	102555119	MSTRG.10576.1	-	102553675,102554711	102553965,102555119	0.867188
SK_MEL_5_nuclear_fraction	chr3	185688638	185688639	185688638	-	RAMPAGE_only	14	14	16	1.179114	3.750000	chr3	185688344	185688629	SINE|Alu|AluSx	-	chr3	185643738	185821131	IGF2BP2|NM_001291875.1	-	185643738,185647024,185649402,185652093,185657285,185658340,185672540,185675295,185675790,185687056,185689354,185696611,185698298,185821011	185645623,185647138,185649534,185652168,185657402,185658409,185672669,185675431,185675913,185687191,185689627,185696663,185698347,185821131	0.500000
SK_MEL_5_nuclear_fraction	chr5	80427519	80427532	80427519	+	RAMPAGE_only	2	2	7	0.515863	2.584963	chr5	80427227	80427541	LINE|L1|L1MC5a	-	chr5	80408082	80440376	ZFYVE16|ENST00000510995.1	+	80408082,80434108,80436755,80439935	80408153,80434217,80439007,80440376	0.714286
SK_MEL_5_nuclear_fraction	chr4	12759374	12759425	12759374	+	High_confidence	6	7	23	1.694977	3.975418	chr4	12759299	12759667	LTR|ERVL-MaLR|THE1B	+	chr4	12759659	12760145	MSTRG.42519.1	+	12759659	12760145	0.695652
SK_MEL_5_nuclear_fraction	chr7	104796663	104796853	104796812	-	RAMPAGE_only	20	20	199	14.665236	4.906532	chr7	104796651	104797140	LTR|ERVL-MaLR|MLT1L	-	chr7	104768668	104804084	MSTRG.53976.7	-	104768668,104785219,104785730,104802838,104803955	104779346,104785378,104800069,104802963,104804084	0.994975
SK_MEL_5_nuclear_fraction	chrX	74000324	74000385	74000384	+	RAMPAGE_only	4	4	18	1.326504	2.974938	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	1.000000
SK_MEL_5_nuclear_fraction	chr3	32703650	32703651	32703650	+	High_confidence	4	4	7	0.515863	2.807355	chr3	32703312	32703822	DNA|TcMar-Tigger|MER44B	-	chr3	32703790	32713349	CNOT10|ENST00000485136.5	+	32703790,32704810,32708669,32713226	32703962,32704972,32708820,32713349	0.714286
SK_MEL_5_nuclear_fraction	chr6	13299447	13299473	13299447	-	RAMPAGE_only	3	3	13	0.958031	3.238901	chr6	13299293	13299464	SINE|MIR|MIR3	+	chr6	13279294	13328130	MSTRG.48665.6	-	13279294,13281428,13284661,13295274,13306397,13307599,13315607,13316570,13320907,13325093,13326786,13327832	13281156,13283285,13294898,13305187,13306527,13307745,13315713,13316708,13321095,13325174,13326906,13328130	1.000000
SK_MEL_5_nuclear_fraction	chr7	104804269	104804302	104804301	-	High_confidence	13	15	45	3.316260	5.106937	chr7	104804006	104804386	LTR|ERVL-MaLR|MLT1K	-	chr7	104796515	104804107	LHFPL3-AS1|ENST00000434579.6	-	104796515,104798336,104799817,104802838,104803955	104796949,104798407,104800069,104802963,104804107	0.866667
SK_MEL_5_nuclear_fraction	chr2	55615610	55615630	55615629	-	High_confidence	5	5	15	1.105420	3.521641	chr2	55615580	55615882	SINE|Alu|AluSc	+	chr2	55614129	55615701	MSTRG.31009.10	-	55614129,55615599	55615506,55615701	0.533333
SK_MEL_5_nuclear_fraction	chr4	12759494	12759497	12759494	+	High_confidence	26	28	59	4.347985	4.497119	chr4	12759299	12759667	LTR|ERVL-MaLR|THE1B	+	chr4	12759659	12760145	MSTRG.42519.1	+	12759659	12760145	0.745763
SK_MEL_5_nuclear_fraction	chr1	116496892	116496965	116496892	-	RAMPAGE_only	51	53	144	10.612030	6.102043	chr1	116496593	116497121	LINE|L2|L2a	+	chr1	116487136	116571039	MSTRG.2987.1	-	116487136,116504370,116504979,116519230,116521905,116535964,116544310,116570902	116496951,116504421,116505139,116519267,116521983,116536228,116544604,116571039	0.951389
SK_MEL_5_nuclear_fraction	chr13	46466794	46466847	46466846	-	High_confidence	25	26	117	8.622275	5.717167	chr13	46466605	46467206	LTR|ERV1|HERVE-int	+	chr13	46455134	46466179	LINC01198|ENST00000649910.1	-	46455134,46457839,46460944,46464674,46465842	46455511,46457913,46461170,46464819,46466179	0.658120
SK_MEL_5_nuclear_fraction	chr4	165743062	165743087	165743062	-	High_confidence	2	2	8	0.589557	2.750000	chr4	165743039	165743351	SINE|Alu|AluY	+	chr4	165730778	165743071	LOC101928131|NR_121677.1	-	165730778,165734672,165738330,165743018	165731684,165734903,165738695,165743071	0.750000
SK_MEL_5_nuclear_fraction	chr3	123950276	123950294	123950282	-	RAMPAGE_only	5	5	14	1.031725	3.467720	chr3	123950221	123950801	LINE|L1|L1ME3	+	chr3	123946803	123961209	MSTRG.40662.19	-	123946803,123947279,123948690,123948895,123949383,123956354,123961143	123947057,123947319,123948785,123949132,123956115,123956795,123961209	1.000000
SK_MEL_5_nuclear_fraction	chr9	138172779	138172832	138172808	-	High_confidence	6	6	34	2.505618	4.631293	chr9	138172667	138172875	LTR|ERVL-MaLR|THE1B	-	chr9	138161574	138173129	MSTRG.60212.1	-	138161574	138173129	1.000000
SK_MEL_5_nuclear_fraction	chr21	18760301	18760355	18760301	-	High_confidence	19	19	53	3.905817	4.583232	chr21	18759779	18760548	LTR|ERV1|LTR17	-	chr21	18561264	18760003	MIR548XHG|ENST00000437492.5	-	18561264,18589526,18737923,18759773	18561691,18589620,18738025,18760003	0.698113
SK_MEL_5_nuclear_fraction	chr1	150729225	150729237	150729225	-	High_confidence	2	2	8	0.589557	2.807355	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150646224	150729978	MSTRG.3470.1	-	150646224,150661813,150663631,150694655,150696991,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150717137,150719472,150729141,150729573	150648748,150661928,150663763,150694850,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150717282,150719538,150729225,150729978	0.875000
SK_MEL_5_nuclear_fraction	chr9	20658312	20658347	20658338	+	High_confidence	62	74	236	17.391939	5.842063	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.661017
SK_MEL_5_nuclear_fraction	chr9	2827593	2827687	2827631	-	RAMPAGE_only	6	6	54	3.979511	3.952201	chr9	2827490	2827691	DNA|hAT-Charlie|Charlie13b	-	chr9	2777217	2829925	MSTRG.57829.3	-	2777217,2804256,2807813,2810343,2811360,2812219,2820017,2823780,2824716,2827072,2829773	2777994,2804463,2807904,2810431,2811583,2812362,2820098,2823834,2824815,2828778,2829925	0.962963
SK_MEL_5_nuclear_fraction	chr22	30975177	30975305	30975304	+	RAMPAGE_only	16	17	113	8.327496	4.276505	chr22	30975231	30975411	DNA|hAT-Charlie|Charlie15a	-	chr22	30972262	30976063	TUG1|ENST00000602393.1	+	30972262,30975169	30973601,30976063	0.973451
SK_MEL_5_nuclear_fraction	chr1	239629150	239629151	239629150	+	High_confidence	4	4	7	0.515863	2.807355	chr1	239623498	239629523	LINE|L1|L1HS	-	chr1	239629072	239915452	CHRM3|ENST00000255380.8	+	239629072,239632223,239678185,239827251,239907432	239629539,239632286,239678288,239827378,239915452	0.714286
SK_MEL_5_nuclear_fraction	chr11	65431602	65431632	65431602	+	RAMPAGE_only	3	3	13	0.958031	3.392747	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
SK_MEL_5_nuclear_fraction	chr3	69959120	69959147	69959120	+	RAMPAGE_only	3	3	11	0.810641	2.846439	chr3	69958969	69959172	LINE|L1|L1PB1	+	chr3	69936627	69965570	MITF|ENST00000478490.5	+	69936627,69937821,69939097,69941235,69949050,69951811,69956454,69959272,69964846	69936755,69938049,69939146,69941331,69949168,69951886,69956530,69959420,69965570	0.545455
SK_MEL_5_nuclear_fraction	chr7	56043149	56043150	56043149	-	RAMPAGE_only	19	19	19	1.400198	3.531631	chr7	56042985	56043279	SINE|Alu|AluSx	+	chr7	56011537	56051392	MSTRG.52914.5	-	56011537,56013258,56017233,56019599,56021072,56031928,56033960,56043147,56051313	56011869,56015171,56017379,56019734,56021231,56032054,56034154,56043261,56051392	0.842105
SK_MEL_5_nuclear_fraction	chr7	131108707	131108708	131108707	-	RAMPAGE_only	15	15	18	1.326504	3.524945	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944159	131109916	LINC-PINT|NR_109854.1	-	130944159,130945719,130984052,131052424,131107719,131109736	130944889,130945791,130984109,131052555,131108803,131109916	1.000000
SK_MEL_5_nuclear_fraction	chr4	4342084	4342165	4342126	+	High_confidence	32	33	169	12.454397	6.364667	chr4	4341935	4342312	LTR|ERVL-MaLR|MSTC	+	chr4	4342128	4419058	MSTRG.42328.1	+	4342128,4348046,4385472,4385856,4387118,4387603,4391474,4409572,4417234	4348017,4348471,4385555,4386643,4387173,4387758,4391591,4409683,4419058	0.905325
SK_MEL_5_nuclear_fraction	chr9	128498472	128498538	128498524	+	RAMPAGE_only	2	2	9	0.663252	3.169925	chr9	128498530	128498750	SINE|MIR|MIR	+	chr9	128456421	128501292	ODF2|ENST00000434106.7	+	128456421,128457197,128459566,128460941,128469182,128471307,128472912,128473609,128481579,128482815,128483937,128484700,128485364,128487889,128492425,128492700,128494509,128496040,128498412,128499000,128500066	128456576,128457437,128459657,128461067,128469353,128471468,128473042,128473741,128481651,128482887,128484054,128484886,128485474,128488025,128492536,128492805,128494668,128496141,128498575,128499126,128501292	1.000000
SK_MEL_5_nuclear_fraction	chr8	12792889	12792896	12792895	-	RAMPAGE_only	4	4	8	0.589557	2.807355	chr8	12792562	12792976	LTR|ERVL-MaLR|MSTA	-	chr8	12765702	12796719	MSTRG.55408.2	-	12765702,12788331,12790756	12778356,12788444,12796719	0.875000
SK_MEL_5_nuclear_fraction	chr18	68823128	68823178	68823151	+	High_confidence	7	7	19	1.400198	3.683542	chr18	68822847	68823421	LTR|ERV1|MER51E	+	chr18	68823373	68897793	CCDC102B|ENST00000577772.5	+	68823373,68836748,68838705,68846312,68874668,68897218,68897577	68823416,68837369,68838926,68846421,68874785,68897428,68897793	0.947368
SK_MEL_5_nuclear_fraction	chrX	74000118	74000135	74000118	+	RAMPAGE_only	3	3	10	0.736947	2.947703	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.700000
SK_MEL_5_nuclear_fraction	chrX	74000420	74000427	74000421	+	RAMPAGE_only	2	3	8	0.589557	3.000000	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.875000
SK_MEL_5_nuclear_fraction	chr6	79631242	79631279	79631278	+	High_confidence	3	3	11	0.810641	2.646439	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.727273
SK_MEL_5_nuclear_fraction	chr1	74746602	74746656	74746655	+	RAMPAGE_only	2	2	8	0.589557	3.000000	chr1	74746597	74746766	LINE|L2|L2b	-	chr1	74733162	74763989	MSTRG.2209.3	+	74733162,74736541,74738689,74747744,74752291,74761658,74763893	74733418,74736622,74747684,74748822,74752425,74761759,74763989	1.000000
SK_MEL_5_nuclear_fraction	chr22	32221091	32221161	32221129	-	RAMPAGE_only	2	2	13	0.958031	3.584963	chr22	32221112	32221292	LINE|L1|HAL1	-	chr22	32213466	32233248	MSTRG.37640.4	-	32213466,32220919,32225654,32229193,32230967,32232898,32233148	32218725,32221022,32225823,32229344,32231075,32233034,32233248	0.769231
SK_MEL_5_nuclear_fraction	chr17	67738591	67738600	67738591	+	RAMPAGE_only	4	4	9	0.663252	2.750000	chr17	67738548	67738692	SINE|Alu|FLAM_C	+	chr17	67737038	67744151	NOL11|ENST00000583108.5	+	67737038,67737507,67738121,67739515,67743478,67743742	67737145,67737972,67739010,67739608,67743586,67744151	0.888889
SK_MEL_5_nuclear_fraction	chr1	19200206	19200208	19200206	-	RAMPAGE_only	5	8	11	0.810641	3.121928	chr1	19199987	19200166	SINE|MIR|MIR	-	chr1	19074505	19210252	UBR4|NM_020765.2	-	19074505,19076739,19077975,19081348,19084503,19086144,19086678,19087815,19088758,19092818,19093312,19093948,19094905,19095544,19096522,19097192,19099596,19100375,19101519,19104083,19104584,19105047,19105732,19106568,19106836,19110095,19110379,19110741,19112523,19113698,19113944,19114810,19115397,19117220,19117822,19118871,19119556,19120179,19121188,19121933,19122832,19124540,19126445,19127622,19128210,19128977,19138006,19139082,19140787,19141346,19141646,19143979,19144785,19145792,19146825,19147992,19148562,19150576,19151642,19152312,19153300,19153767,19154917,19155440,19156270,19156766,19157814,19160110,19160916,19161588,19161826,19162419,19163763,19164252,19164798,19165248,19165655,19167021,19168026,19169434,19170761,19172863,19173180,19173438,19174318,19174953,19176591,19177460,19179050,19183810,19184015,19185098,19186539,19187163,19187440,19192187,19192480,19193432,19197140,19197669,19197946,19198540,19198798,19199650,19201717,19210072	19074896,19076902,19078066,19081573,19084698,19086270,19086821,19087929,19088977,19092918,19093486,19094139,19095025,19095652,19096650,19097280,19099677,19100573,19101641,19104257,19104666,19105189,19105842,19106726,19106966,19110223,19110464,19110832,19112867,19113827,19114070,19114949,19115637,19117414,19117910,19118957,19119701,19120348,19121434,19122012,19123060,19124690,19126655,19127739,19128318,19129074,19138181,19139220,19140892,19141524,19141777,19144091,19144907,19145933,19147000,19148127,19148626,19150793,19151859,19152476,19153502,19153939,19155075,19155668,19156423,19156925,19157997,19160281,19161147,19161736,19161897,19162611,19163827,19164441,19164997,19165349,19165757,19167231,19168184,19169532,19170883,19173093,19173306,19173621,19174447,19175033,19176727,19177743,19179220,19183896,19184175,19185286,19186657,19187301,19187540,19192378,19192540,19193557,19197265,19197811,19198049,19198680,19198928,19199754,19201815,19210252	0.909091
SK_MEL_5_nuclear_fraction	chr9	120440871	120440878	120440871	-	RAMPAGE_only	3	4	9	0.663252	2.750000	chr9	120440868	120441006	LINE|CR1|L3b	-	chr9	120389195	120536437	MSTRG.59589.5	-	120389195,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120447894,120453455,120458449,120460571,120467859,120470110,120471747,120475205,120487293,120491306,120518426,120524985,120527805,120528743,120529977,120536371	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120443742,120448126,120453873,120458622,120460667,120467997,120470220,120475106,120477450,120487437,120491477,120518645,120525078,120527925,120528797,120530140,120536437	0.888889
SK_MEL_5_nuclear_fraction	chr14	102234993	102235053	102234993	-	High_confidence	7	7	31	2.284534	3.511324	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102229213	102235424	MSTRG.17967.21	-	102229213,102232534,102235364	102229657,102233789,102235424	0.967742
SK_MEL_5_nuclear_fraction	chr7	104772117	104772161	104772148	-	RAMPAGE_only	4	4	14	1.031725	3.324863	chr7	104771799	104772117	SINE|Alu|AluSx	-	chr7	104768668	104804084	MSTRG.53976.7	-	104768668,104785219,104785730,104802838,104803955	104779346,104785378,104800069,104802963,104804084	1.000000
SK_MEL_5_nuclear_fraction	chr3	9986881	9986899	9986898	+	High_confidence	20	20	44	3.242565	4.879664	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986899	10007004	MSTRG.38589.2	+	9986899,9998775	9988747,10007004	1.000000
SK_MEL_5_nuclear_fraction	chr18	245219	245251	245219	-	High_confidence	3	3	10	0.736947	2.921928	chr18	243923	245900	LINE|L1|L1MEi	-	chr18	214520	245734	THOC1|ENST00000583228.5	-	214520,215428,216485,218885,223439,224083,224923,225088,226800,244301	214921,215504,216633,218969,223505,224179,224994,225403,226901,245734	0.900000
SK_MEL_5_nuclear_fraction	chr19	48868613	48868666	48868613	-	High_confidence	142	162	1048	77.231999	7.522837	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.986641
SK_MEL_5_nuclear_fraction	chr18	12606763	12606764	12606763	-	RAMPAGE_only	5	6	8	0.589557	2.521641	chr18	12606533	12606830	SINE|Alu|AluSz6	-	chr18	12449505	12636340	SPIRE1|ENST00000440472.6	-	12449505,12452254,12453067,12454345,12463350,12464867,12479698,12493071,12496015,12506476,12512453,12535475,12546673,12588375,12635061,12636323	12449896,12452443,12453138,12454483,12463493,12464958,12479871,12493201,12496102,12506641,12512531,12535601,12546904,12588419,12635096,12636340	0.750000
SK_MEL_5_nuclear_fraction	chr20	35307090	35307091	35307090	-	High_confidence	10	10	10	0.736947	2.646439	chr20	35306926	35307046	SINE|MIR|MIR3	-	chr20	35302565	35307082	UQCC1|ENST00000472559.5	-	35302565,35306665	35304069,35307082	0.900000
SK_MEL_5_nuclear_fraction	chr6	89654453	89654492	89654466	-	RAMPAGE_only	18	21	130	9.580305	5.664079	chr6	89654446	89654582	SINE|MIR|MIRc	+	chr6	89642774	89662498	MSTRG.50288.2	-	89642774,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658609,89661430,89662086	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89658370,89658917,89661578,89662498	0.984615
SK_MEL_5_nuclear_fraction	chr1	226542728	226542739	226542738	-	High_confidence	264	277	416	30.656977	6.818726	chr1	226542461	226543018	LTR|ERVL|LTR66	-	chr1	226534991	226542756	MSTRG.5175.2	-	226534991,226542638	226541255,226542756	0.783654
SK_MEL_5_nuclear_fraction	chr7	95543357	95543373	95543372	+	RAMPAGE_only	2	3	6	0.442168	2.584963	chr7	95543349	95543446	LTR|ERVL|LTR33	+	chr7	95542144	95544542	AC002451.2|ENST00000624998.1	+	95542144	95544542	1.000000
SK_MEL_5_nuclear_fraction	chr17	42814904	42814918	42814917	-	High_confidence	6	6	11	0.810641	3.121928	chr17	42814830	42815625	LINE|L2|L2b	+	chr17	42810287	42814593	BECN1|ENST00000590764.1	-	42810287,42811654,42814523	42810928,42811797,42814593	0.727273
SK_MEL_5_nuclear_fraction	chr13	83496721	83496762	83496721	+	High_confidence	473	627	1324	97.571724	7.479483	chr13	83496525	83496860	LTR|ERVL-MaLR|THE1A	+	chr13	83496604	83520175	MSTRG.15490.1	+	83496604,83497295,83509459,83516112	83496804,83501141,83509545,83520175	0.868580
SK_MEL_5_nuclear_fraction	chr8	12746420	12746448	12746430	-	RAMPAGE_only	3	3	13	0.958031	3.546594	chr8	12746272	12746502	LINE|L2|L2c	+	chr8	12722943	12755490	MSTRG.55410.5	-	12722943,12725726,12728900,12729173,12731735,12735285,12736700,12736899,12737994,12740873,12743163	12723254,12725879,12729063,12729332,12731857,12735400,12736797,12737140,12738144,12740996,12755490	1.000000
SK_MEL_5_nuclear_fraction	chr22	32233310	32233352	32233315	-	High_confidence	10	10	41	3.021481	3.524024	chr22	32233138	32233397	LINE|L1|L1MA4	+	chr22	32213466	32233248	MSTRG.37640.2	-	32213466,32213835,32220919,32229193,32230967,32232898,32233148	32213699,32218725,32225823,32229344,32231075,32233034,32233248	0.975610
SK_MEL_5_nuclear_fraction	chr14	102246218	102246242	102246218	-	High_confidence	80	92	325	23.950763	5.141236	chr14	102246199	102246391	LTR|ERV1|HERVFH21-int	+	chr14	102229072	102246247	MOK|ENST00000520266.5	-	102229072,102233687,102246056	102229657,102233789,102246247	0.643077
SK_MEL_5_nuclear_fraction	chr3	53197287	53197294	53197287	+	High_confidence	28	36	70	5.158626	4.433312	chr3	53197093	53197442	LTR|ERVL-MaLR|THE1C	+	chr3	53197296	53236440	MSTRG.39651.1	+	53197296,53198341,53227951	53197352,53198542,53236440	0.914286
SK_MEL_5_nuclear_fraction	chr1	239628993	239629041	239629026	+	High_confidence	9	9	35	2.579313	3.620347	chr1	239623498	239629523	LINE|L1|L1HS	-	chr1	239629072	239915452	CHRM3|ENST00000255380.8	+	239629072,239632223,239678185,239827251,239907432	239629539,239632286,239678288,239827378,239915452	0.857143
SK_MEL_5_nuclear_fraction	chr12	9567531	9567542	9567531	+	RAMPAGE_only	63	64	224	16.507603	3.716008	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9558385	9576294	MSTRG.11559.12	+	9558385,9559174,9560109,9560816,9564159,9565091,9567489,9569057,9570765,9571460,9573002,9573465,9574846,9575642,9576117	9558452,9559348,9560191,9562976,9564325,9565303,9567567,9569202,9570892,9571573,9573093,9573534,9574949,9575717,9576294	0.973214
SK_MEL_5_nuclear_fraction	chr8	81283122	81283153	81283122	+	High_confidence	3	3	12	0.884336	3.277613	chr8	81283009	81283211	SINE|MIR|MIR	+	chr8	81283027	81283940	FABP5|ENST00000486269.1	+	81283027,81283872	81283538,81283940	0.750000
SK_MEL_5_nuclear_fraction	chr13	82457766	82457819	82457812	+	High_confidence	32	32	140	10.317252	6.013554	chr13	82457553	82458088	LTR|ERV1|LTR17	+	chr13	82457804	82525971	MSTRG.15453.2	+	82457804,82523827,82525367	82458119,82524005,82525971	0.600000
SK_MEL_5_nuclear_fraction	chr18	12119592	12119596	12119592	+	RAMPAGE_only	3	3	8	0.589557	2.807355	chr18	12119376	12119695	LTR|ERVL-MaLR|MLT1A0	-	chr18	12102705	12129749	ANKRD62|ENST00000418274.2	+	12102705,12103157,12107294,12115087,12115392,12122302,12124136,12125459,12127747	12102788,12103228,12107467,12115121,12115534,12122516,12124320,12126383,12129749	0.875000
SK_MEL_5_nuclear_fraction	chr3	112302375	112302417	112302414	+	High_confidence	10	10	25	1.842366	4.403856	chr3	112301857	112302478	LTR|ERV1|LTR76	+	chr3	112302500	112330324	MSTRG.40422.2	+	112302500,112306913,112326521,112327610,112329345,112330249	112302714,112307198,112326650,112327706,112329386,112330324	0.680000
SK_MEL_5_nuclear_fraction	chr12	91179462	91179526	91179525	-	High_confidence	6	7	21	1.547588	4.106603	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91145258	91179582	DCN|ENST00000393155.5	-	91145258,91151653,91153095,91157074,91158295,91164604,91178341,91179361	91146252,91151792,91153189,91157188,91158509,91164717,91178585,91179582	0.523810
SK_MEL_5_nuclear_fraction	chr7	104793881	104793923	104793891	-	RAMPAGE_only	7	7	22	1.621282	3.823068	chr7	104793890	104794103	LINE|L1|L1ME3A	+	chr7	104768668	104804084	MSTRG.53976.7	-	104768668,104785219,104785730,104802838,104803955	104779346,104785378,104800069,104802963,104804084	1.000000
SK_MEL_5_nuclear_fraction	chr2	55228134	55228159	55228158	-	RAMPAGE_only	3	3	11	0.810641	2.921928	chr2	55228053	55228212	LINE|L2|L2c	+	chr2	55175638	55232263	MSTRG.30998.4	-	55175638,55177601,55180509,55181569,55205604,55206269,55208625,55209403,55209629,55212672,55217810,55232235	55175986,55177781,55180712,55181744,55205728,55206376,55208710,55209516,55209831,55212806,55222493,55232263	0.727273
SK_MEL_5_nuclear_fraction	chr9	129488846	129488931	129488856	+	High_confidence	218	221	879	64.777602	5.315802	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.944255
SK_MEL_5_nuclear_fraction	chr11	89190739	89190761	89190739	+	RAMPAGE_only	2	2	7	0.515863	2.521641	chr11	89189864	89191085	DNA|TcMar-Tigger|Tigger3b	+	chr11	89177892	89295759	MSTRG.10372.3	+	89177892,89191201,89227822,89284772,89295142	89179385,89191418,89227970,89284954,89295759	0.571429
SK_MEL_5_nuclear_fraction	chr18	31296465	31296488	31296465	+	RAMPAGE_only	2	2	7	0.515863	2.521641	chr18	31296420	31296694	SINE|Alu|AluYa5	-	chr18	32018371	32073213	RNF125|ENST00000217740.3	+	32018371,32037115,32042178,32045641,32065901,32068297	32019027,32037269,32042273,32045732,32066009,32073213	0.857143
SK_MEL_5_nuclear_fraction	chr11	65432869	65432901	65432869	+	RAMPAGE_only	3	3	9	0.663252	2.725481	chr11	65432693	65433229	LINE|L1|L1PB3	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
SK_MEL_5_nuclear_fraction	chr14	77318445	77318515	77318514	-	RAMPAGE_only	4	4	20	1.473893	3.721928	chr14	77316853	77318735	LTR|ERVL|HERVL40-int	+	chr14	77285280	77320704	MSTRG.17517.13	-	77285280,77286743,77288761,77291313,77296163,77298688,77299454,77301089,77302834,77304691,77306245,77311948,77320433	77285632,77286822,77288831,77291380,77296273,77298771,77299561,77301249,77302943,77304800,77306441,77312033,77320704	0.700000
SK_MEL_5_nuclear_fraction	chr4	915787	915797	915787	-	High_confidence	11	13	28	2.063450	4.032303	chr4	915667	916056	LINE|L1|L1ME1	+	chr4	904652	915756	GAK|ENST00000510022.5	-	904652,911672,912734,913606,915497	904774,911787,912794,913668,915756	0.928571
SK_MEL_5_nuclear_fraction	chr9	39810033	39810118	39810033	-	High_confidence	45	45	100	7.369466	5.357173	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.820000
SK_MEL_5_nuclear_fraction	chr11	13419711	13419734	13419711	-	RAMPAGE_only	2	2	11	0.810641	2.921928	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.818182
SK_MEL_5_nuclear_fraction	chr20	8600636	8600661	8600660	+	High_confidence	26	28	76	5.600794	4.376704	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.750000
SK_MEL_5_nuclear_fraction	chr20	50483563	50483611	50483576	-	High_confidence	38	40	134	9.875084	4.352305	chr20	50483433	50483688	LTR|ERVL|LTR16C	-	chr20	50478943	50483578	MSTRG.35774.1	-	50478943,50481489	50480504,50483578	0.992537
SK_MEL_5_nuclear_fraction	chr20	25246795	25246844	25246795	-	RAMPAGE_only	3	3	12	0.884336	2.855389	chr20	25246606	25246746	LINE|L1|L1ME4c	-	chr20	25239006	25247956	MSTRG.35181.2	-	25239006,25245119,25246447	25241231,25245346,25247956	1.000000
SK_MEL_5_nuclear_fraction	chr7	104771466	104771521	104771487	-	RAMPAGE_only	7	7	32	2.358229	4.506891	chr7	104771236	104771467	SINE|MIR|MIRc	-	chr7	104768668	104804084	MSTRG.53976.7	-	104768668,104785219,104785730,104802838,104803955	104779346,104785378,104800069,104802963,104804084	0.906250
SK_MEL_5_nuclear_fraction	chr7	78568363	78568395	78568363	-	High_confidence	19	21	41	3.021481	4.803056	chr7	78567616	78568734	LINE|L2|L2a	+	chr7	78518063	78568364	MAGI2|ENST00000635863.1	-	78518063,78521429,78567948,78568094	78519126,78521645,78568004,78568364	0.780488
SK_MEL_5_nuclear_fraction	chr13	42819820	42819856	42819822	-	RAMPAGE_only	40	53	121	8.917053	5.696055	chr13	42819653	42820002	LTR|ERVL-MaLR|THE1B	-	chr13	42810365	42814422	MSTRG.14767.1	-	42810365,42812391	42811842,42814422	0.842975
SK_MEL_5_nuclear_fraction	chr2	37291199	37291240	37291199	-	High_confidence	2	2	12	0.884336	3.418296	chr2	37291191	37291479	DNA|TcMar-Tigger|Tigger16b	-	chr2	37282305	37290962	PRKD3|ENST00000475912.1	-	37282305,37286176,37289355,37290867	37282619,37286369,37289513,37290962	0.750000
SK_MEL_5_nuclear_fraction	chr11	65429363	65429435	65429434	+	RAMPAGE_only	3	4	14	1.031725	2.753434	chr11	65428987	65429477	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
SK_MEL_5_nuclear_fraction	chr12	76050984	76051001	76050984	-	RAMPAGE_only	2	3	8	0.589557	3.000000	chr12	76050731	76051020	SINE|Alu|AluJo	+	chr12	76049433	76053158	NAP1L1|ENST00000547969.5	-	76049433,76050530,76053090	76049785,76050653,76053158	0.875000
SK_MEL_5_nuclear_fraction	chr7	28598242	28598243	28598242	+	RAMPAGE_only	25	29	32	2.358229	4.538910	chr7	28598047	28598393	LTR|ERVL-MaLR|THE1A	+	chr7	28609060	28809317	CREB5|ENST00000426500.5	+	28609060,28718752,28724221,28804198,28809186	28609120,28718879,28724332,28804522,28809317	0.656250
SK_MEL_5_nuclear_fraction	chr6	31400605	31400620	31400605	-	High_confidence	5	6	17	1.252809	2.822182	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31397727	31400629	MSTRG.49126.1	-	31397727	31400629	1.000000
SK_MEL_5_nuclear_fraction	chr10	116906642	116906662	116906642	-	RAMPAGE_only	5	6	14	1.031725	3.324863	chr10	116906573	116906651	LINE|CR1|L3	+	chr10	116883376	117005577	MSTRG.7858.2	-	116883376,116906626,116911789,116915374,116921433,116927791,116929848,116940465,116944923,116948915,116951908,116954041,116960135,116968651,116979255,117005021	116901957,116906747,116911843,116915484,116921516,116927891,116930002,116940612,116945018,116948997,116952006,116954210,116960230,116968712,116979308,117005577	0.785714
SK_MEL_5_nuclear_fraction	chrX	135890254	135890317	135890294	+	High_confidence	4	4	30	2.210840	4.906891	chrX	135890238	135890635	LTR|ERV1|HERVE_a-int	+	chrX	135890260	135913061	MSTRG.62254.3	+	135890260,135893706,135896242,135901558,135904476,135905251,135906410,135906925,135907312,135907700,135908088,135908476,135908863,135909638,135910029,135910414,135911191,135911578,135912320,135912797	135890475,135894388,135896329,135901691,135904569,135906164,135906551,135907066,135907453,135907841,135908229,135908617,135909004,135909779,135910170,135910555,135911332,135911953,135912414,135913061	0.733333
SK_MEL_5_nuclear_fraction	chr4	49495020	49495056	49495044	-	RAMPAGE_only	111	134	349	25.719435	6.293344	chr4	49494957	49495361	LTR|ERV1|MER61C	+	chr4	49486925	49489554	AC119751.3|ENST00000399720.4	-	49486925,49488433,49489269	49487096,49488647,49489554	0.716332
SK_MEL_5_nuclear_fraction	chr2	166014056	166014057	166014056	-	RAMPAGE_only	8	8	10	0.736947	2.921928	chr2	166014041	166014137	SINE|MIR|MIRc	+	chr2	165989868	166036274	SCN1A|ENST00000637038.1	-	165989868,165994145,165996012,165998037,165999722,166002471,166007229,166009718,166012108,166013743,166015606,166036047	165992422,165994416,165996117,165998175,165999776,166002753,166007293,166009841,166012282,166013898,166015727,166036274	0.500000
SK_MEL_5_nuclear_fraction	chr4	170088885	170088896	170088885	-	High_confidence	4	4	13	0.958031	2.855389	chr4	170088681	170089067	LTR|ERVL-MaLR|MLT1A1	+	chr4	170060221	170089382	MSTRG.44760.3	-	170060221,170061891,170066413,170067326,170068590,170069147,170069353,170073135,170078508,170084925,170088395,170089260	170060969,170064825,170066478,170067388,170068687,170069230,170070652,170073345,170078583,170087248,170088564,170089382	0.846154
SK_MEL_5_nuclear_fraction	chr21	10328711	10328911	10328762	-	RAMPAGE_only	14	15	157	11.570061	4.736141	chr21	10328549	10329040	LINE|L1|L1MCa	-	chr21	10328410	10342669	AP003900.1|ENST00000622592.1	-	10328410,10338454,10340413,10342615	10329038,10338566,10340478,10342669	0.872611
SK_MEL_5_nuclear_fraction	chr1	197139326	197139364	197139363	-	High_confidence	3	3	14	1.031725	3.664498	chr1	197139314	197139480	SINE|Alu|AluY	+	chr1	197138747	197139307	SEPT14P12|ENST00000442280.1	-	197138747	197139307	0.857143
SK_MEL_5_nuclear_fraction	chr3	164737448	164737449	164737448	+	High_confidence	7	7	10	0.736947	2.947703	chr3	164737184	164737605	LTR|ERVL-MaLR|MSTB	+	chr3	164737434	164740700	MSTRG.41460.1	+	164737434	164740700	0.900000
SK_MEL_5_nuclear_fraction	chr11	123469400	123469415	123469402	+	RAMPAGE_only	77	103	224	16.507603	5.787973	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123480737	123594838	GRAMD1B|ENST00000633087.1	+	123480737,123577366,123584311,123594081,123594734	123480893,123577577,123584332,123594166,123594838	0.633929
SK_MEL_5_nuclear_fraction	chrX	24076540	24076595	24076540	+	RAMPAGE_only	2	2	9	0.663252	2.947703	chrX	24076251	24076561	SINE|Alu|AluSz	+	chrX	24054970	24077971	MSTRG.60747.4	+	24054970,24055614,24057420,24057632,24060087,24062415,24064200,24065997,24067963,24071557,24073090,24074960	24055037,24055678,24057548,24057754,24060182,24062574,24064335,24066092,24068108,24071727,24074731,24077971	1.000000
SK_MEL_5_nuclear_fraction	chr11	10806191	10806216	10806215	-	High_confidence	2	2	8	0.589557	2.807355	chr11	10806178	10806347	DNA|hAT-Charlie|MER5A	-	chr11	10804291	10806263	EIF4G2|ENST00000532152.5	-	10804291,10804912,10805906	10804418,10805015,10806263	0.625000
SK_MEL_5_nuclear_fraction	chr22	39021125	39021156	39021155	+	High_confidence	15	15	76	5.600794	5.240299	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	MSTRG.37951.4	+	39021112,39022821,39029362,39031693,39032197	39021536,39025671,39029519,39031973,39033276	0.986842
SK_MEL_5_nuclear_fraction	chr17	57866740	57866797	57866740	-	High_confidence	3	3	17	1.252809	3.155639	chr17	57866710	57866861	SINE|MIR|MIR3	+	chr17	57862962	57866857	CUEDC1|ENST00000577497.5	-	57862962,57866473	57863285,57866857	0.882353
SK_MEL_5_nuclear_fraction	chr2	55615826	55615857	55615826	-	High_confidence	7	7	23	1.694977	4.262692	chr2	55615580	55615882	SINE|Alu|AluSc	+	chr2	55614129	55615701	MSTRG.31009.10	-	55614129,55615599	55615506,55615701	0.565217
SK_MEL_5_nuclear_fraction	chr12	9407491	9407516	9407506	-	High_confidence	1767	2313	6743	496.923064	5.893955	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9403028	9407534	MSTRG.11558.7	-	9403028,9404630,9406182	9403200,9405223,9407534	0.845618
SK_MEL_5_nuclear_fraction	chr1	180558963	180558964	180558963	+	High_confidence	156	158	164	12.085924	6.225892	chr1	180558768	180559133	LTR|ERVL-MaLR|THE1A	+	chr1	180558975	180566518	MSTRG.4276.2	+	180558975,180562203	180559055,180566518	0.786585
SK_MEL_5_nuclear_fraction	chr2	38747101	38747164	38747141	-	High_confidence	7	8	22	1.621282	3.463281	chr2	38747082	38747141	SINE|Alu|AluSc8	+	chr2	38744894	38747044	SRSF7|ENST00000477635.5	-	38744894,38746143,38746693	38745187,38746179,38747044	0.909091
SK_MEL_5_nuclear_fraction	chr21	45593653	45593654	45593653	+	High_confidence	8	8	12	0.884336	3.277613	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	0.916667
SK_MEL_5_nuclear_fraction	chr14	46885954	46885992	46885968	-	RAMPAGE_only	5	8	33	2.431924	3.896688	chr14	46885639	46886113	LTR|ERVL|LTR40a	-	chr14	46873333	46882222	MDGA2|ENST00000557516.1	-	46873333,46874044,46882043	46873591,46874200,46882222	0.666667
SK_MEL_5_nuclear_fraction	chr11	7465834	7465835	7465834	-	High_confidence	100	102	118	8.695969	5.816977	chr11	7465676	7466033	LTR|ERVL-MaLR|THE1A	-	chr11	7435827	7465814	MSTRG.8466.10	-	7435827,7440126,7450372,7457795,7465752	7435977,7441719,7450442,7461336,7465814	0.771186
SK_MEL_5_nuclear_fraction	chr20	57601170	57601191	57601190	-	High_confidence	13	14	20	1.473893	3.746439	chr20	57600987	57601427	LINE|L2|L2b	+	chr20	57599694	57601200	AL035541.1|ENST00000424850.1	-	57599694,57600911	57600228,57601200	0.550000
SK_MEL_5_nuclear_fraction	chr19	45450739	45450771	45450770	-	High_confidence	3	3	11	0.810641	3.459432	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.727273
SK_MEL_5_nuclear_fraction	chr8	86477993	86478025	86478024	-	High_confidence	3	3	7	0.515863	2.521641	chr8	86477911	86478183	SINE|Alu|AluJb	-	chr8	86474245	86477453	RMDN1|ENST00000517821.1	-	86474245,86474819,86477293	86474358,86474953,86477453	0.714286
SK_MEL_5_nuclear_fraction	chr7	91979909	91979953	91979909	+	RAMPAGE_only	14	15	60	4.421679	5.081728	chr7	91979517	91979972	DNA|TcMar-Tigger|MER44B	-	chr7	91973755	91995713	AKAP9|ENST00000438114.1	+	91973755,91980288,91992884,91994620,91995602	91973968,91980333,91993055,91994776,91995713	0.816667
SK_MEL_5_nuclear_fraction	chrX	49332444	49332461	49332444	+	High_confidence	5	6	15	1.105420	3.240224	chrX	49332335	49332502	SINE|Alu|FRAM	+	chrX	49331615	49338952	GAGE13|ENST00000612958.1	+	49331615,49332729,49333286,49336246,49338835	49331689,49332821,49333407,49336372,49338952	0.733333
SK_MEL_5_nuclear_fraction	chr19	48270080	48270081	48270080	+	High_confidence	306	313	323	23.803374	5.711166	chr19	48269716	48270187	LTR|ERV1|LTR7C	+	chr19	48270098	48287608	ZNF114|NM_153608.2	+	48270098,48271244,48271726,48279730,48282370,48285760	48270219,48271449,48271828,48279808,48282497,48287608	0.832817
SK_MEL_5_nuclear_fraction	chr3	119500323	119500324	119500323	+	High_confidence	4	4	6	0.442168	2.584963	chr3	119500311	119500526	LINE|L1|L1ME3A	-	chr3	119500373	119513719	TIMMDC1|ENST00000469324.1	+	119500373,119503953,119513640	119500860,119504021,119513719	0.500000
SK_MEL_5_nuclear_fraction	chr11	64226142	64226180	64226142	-	High_confidence	54	54	261	19.234305	6.528410	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64224758	64226141	TRPT1|ENST00000542040.1	-	64224758,64226049	64225580,64226141	0.670498
SK_MEL_5_nuclear_fraction	chr11	65430674	65430905	65430714	+	RAMPAGE_only	26	27	205	15.107404	5.180587	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.975610
SK_MEL_5_nuclear_fraction	chr15	84042408	84042411	84042408	+	RAMPAGE_only	13	13	31	2.284534	4.651084	chr15	84042408	84043645	LINE|L1|L1P1	+	chr15	84080167	84126604	EFL1P1|ENST00000560401.5	+	84080167,84081145,84084199,84090208,84102030,84102874,84104604,84112040,84112833,84113584,84116044,84121089,84121502,84126461	84080326,84081245,84084267,84090293,84102164,84103012,84104819,84112117,84112970,84113707,84116144,84121241,84121669,84126604	0.548387
SK_MEL_5_nuclear_fraction	chr17	59620042	59620057	59620042	+	High_confidence	4	5	15	1.105420	3.323231	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.800000
SK_MEL_5_nuclear_fraction	chr10	119161232	119161242	119161232	-	RAMPAGE_only	4	4	9	0.663252	2.750000	chr10	119161120	119161405	SINE|Alu|AluJr	-	chr10	119157668	119165623	MSTRG.7895.9	-	119157668,119157870,119158008,119159727,119160914,119164130,119165536	119157733,119157927,119158062,119159753,119162414,119164196,119165623	0.666667
SK_MEL_5_nuclear_fraction	chr20	44696111	44696112	44696111	-	High_confidence	11	11	15	1.105420	3.640224	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.533333
SK_MEL_5_nuclear_fraction	chr15	45441832	45441878	45441877	-	High_confidence	7	8	16	1.179114	3.272906	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45430651	45441808	AC025580.1|ENST00000559553.1	-	45430651,45433612,45441780	45430814,45434150,45441808	0.625000
SK_MEL_5_nuclear_fraction	chr5	42759704	42759718	42759712	+	RAMPAGE_only	9	13	30	2.210840	4.456565	chr5	42759476	42759998	DNA|TcMar-Tigger|MER44B	+	chr5	42756817	42802437	CCDC152|NM_001134848.1	+	42756817,42759119,42762442,42769596,42779457,42783473,42796828,42799374,42799658	42756885,42759208,42762548,42769665,42779522,42783576,42796956,42799458,42802437	0.733333
SK_MEL_5_nuclear_fraction	chr16	885590	885610	885590	-	RAMPAGE_only	6	6	14	1.031725	3.182006	chr16	884862	886073	LINE|L1|L1MEc	+	chr16	854500	932601	MSTRG.20702.8	-	854500,868943,869882,870728,871160,879569,893006,910930,931641,932437	854706,869056,870066,870882,871341,881505,893072,911079,932349,932601	0.571429
SK_MEL_5_nuclear_fraction	chr15	75938968	75938992	75938968	+	RAMPAGE_only	2	2	7	0.515863	2.807355	chr15	75938783	75941922	LINE|L1|L1MB3	+	chr15	75903981	75942510	MSTRG.19894.7	+	75903981,75904490,75905577,75913202,75914109,75917229,75929883,75934239	75904103,75904629,75905657,75913290,75914205,75917394,75933831,75942510	1.000000
SK_MEL_5_nuclear_fraction	chr4	188425416	188425417	188425416	+	RAMPAGE_only	9	9	10	0.736947	2.725481	chr4	188424167	188425734	LINE|L1|L1MEc	-	chr4	188400735	188485865	LINC01060|ENST00000512839.5	+	188400735,188436703,188476697,188477637,188485778	188400833,188436900,188476756,188477912,188485865	0.800000
SK_MEL_5_nuclear_fraction	chr3	98733165	98733332	98733173	+	High_confidence	26	35	272	20.044946	5.782716	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.709559
SK_MEL_5_nuclear_fraction	chr17	50737468	50737479	50737468	+	RAMPAGE_only	4	4	8	0.589557	2.521641	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50719628	50751004	LUC7L3|ENST00000508482.5	+	50719628,50740305,50741101,50741656,50743705,50744651,50745719,50746541,50750500,50750723	50719831,50740345,50741246,50741731,50743810,50744813,50746003,50746702,50750641,50751004	0.500000
SK_MEL_5_nuclear_fraction	chr16	60745290	60745311	60745310	-	High_confidence	92	94	238	17.539328	6.312973	chr16	60745152	60745506	LTR|ERVL-MaLR|THE1A	-	chr16	60741307	60745300	MSTRG.22189.1	-	60741307	60745300	0.970588
SK_MEL_5_nuclear_fraction	chr6	136225579	136225580	136225579	-	High_confidence	11	11	12	0.884336	2.913977	chr6	136225478	136225763	LTR|ERVL-MaLR|THE1B	-	chr6	136094714	136225595	AL138828.1|ENST00000417643.5	-	136094714,136095715,136095993,136096119,136110995,136117069,136162251,136225537	136094779,136095825,136096019,136096288,136111101,136117172,136162348,136225595	0.750000
SK_MEL_5_nuclear_fraction	chr17	18538301	18538353	18538348	-	RAMPAGE_only	6	6	19	1.400198	3.266333	chr17	18537305	18538874	LINE|L1|L1PB1	-	chr17	18519490	18625608	MSTRG.23672.23	-	18519490,18532505,18532711,18543672,18551505,18553152,18553972,18579656,18582657,18583340,18587665,18594720,18595147,18603603,18605779,18607896,18610043,18622498,18625103	18519674,18532597,18542187,18543715,18551715,18553373,18554266,18580610,18582786,18583523,18587879,18594862,18595181,18603740,18606619,18607970,18610292,18622569,18625608	0.947368
SK_MEL_5_nuclear_fraction	chr4	32010199	32010222	32010220	-	High_confidence	819	1039	2756	203.102471	5.246914	chr4	32009763	32010888	LINE|L1|L1PA8A	+	chr4	32002728	32010209	MSTRG.42866.2	-	32002728,32007666,32009751,32010117	32006022,32007713,32009815,32010209	0.908926
SK_MEL_5_nuclear_fraction	chr1	9451217	9451221	9451217	-	High_confidence	68	76	112	8.253801	3.779376	chr1	9451056	9451440	LTR|ERVL-MaLR|THE1B	-	chr1	9446208	9451210	MSTRG.397.5	-	9446208,9450801	9450227,9451210	0.928571
SK_MEL_5_nuclear_fraction	chr2	108189392	108189419	108189399	-	High_confidence	11	16	61	4.495374	5.177062	chr2	108189389	108189886	LTR|ERVK|LTR3B_	+	chr2	108166984	108189480	MSTRG.32168.1	-	108166984,108169497,108179153,108184457,108189361	108167769,108169586,108179281,108184682,108189480	0.672131
SK_MEL_5_nuclear_fraction	chr1	52365391	52365436	52365428	+	High_confidence	5	8	28	2.063450	4.132944	chr1	52365190	52365731	LINE|L2|L2b	-	chr1	52365647	52365896	MSTRG.1798.1	+	52365647	52365896	0.571429
SK_MEL_5_nuclear_fraction	chr6	125219777	125219804	125219777	+	High_confidence	692	717	1473	108.552228	6.833350	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.884589
SK_MEL_5_nuclear_fraction	chr13	23471175	23471217	23471175	+	High_confidence	2	2	7	0.515863	2.521641	chr13	23470951	23471361	LINE|L2|L2c	-	chr13	23470839	23487464	MSTRG.14414.4	+	23470839,23483833	23483501,23487464	1.000000
SK_MEL_5_nuclear_fraction	chr12	21214841	21214854	21214853	+	RAMPAGE_only	14	14	34	2.505618	4.354852	chr12	21209060	21215087	LINE|L1|L1PA2	-	chr12	21222341	21270301	MSTRG.11827.18	+	21222341,21224721,21267650,21269646	21222364,21224839,21267771,21270301	0.735294
SK_MEL_5_nuclear_fraction	chr19	48270036	48270046	48270036	+	High_confidence	4	4	9	0.663252	2.947703	chr19	48269716	48270187	LTR|ERV1|LTR7C	+	chr19	48270043	48285881	MSTRG.29371.1	+	48270043,48271286,48271726,48279730,48281551,48282370,48285760	48270219,48271449,48271828,48279808,48281689,48282497,48285881	0.555556
SK_MEL_5_nuclear_fraction	chr9	62897380	62897431	62897430	+	High_confidence	22	24	56	4.126901	4.879245	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.875000
SK_MEL_5_nuclear_fraction	chr3	184908367	184908424	184908421	+	High_confidence	10	11	82	6.042962	5.452200	chr3	184908278	184909120	LTR|ERV1|LTR27B	-	chr3	184908398	184926646	MSTRG.41825.27	+	184908398,184913518,184914980,184915354,184920126,184924861,184926593	184908746,184913561,184915053,184915474,184920198,184924981,184926646	0.670732
SK_MEL_5_nuclear_fraction	chr4	154708643	154708676	154708643	+	High_confidence	76	81	169	12.454397	5.204548	chr4	154708547	154708841	SINE|Alu|AluYm1	-	chr4	154708255	154753118	MSTRG.44581.10	+	154708255,154728702,154730887,154748983	154708986,154730829,154736138,154753118	0.792899
SK_MEL_5_nuclear_fraction	chr22	32232946	32233217	32233194	-	High_confidence	927	960	7009	516.525842	5.814003	chr22	32233138	32233397	LINE|L1|L1MA4	+	chr22	32213466	32233248	MSTRG.37640.1	-	32213466,32220919,32229193,32230967,32232898	32218725,32225823,32229344,32231075,32233248	0.957626
SK_MEL_5_nuclear_fraction	chr3	185693176	185693192	185693176	-	RAMPAGE_only	4	4	9	0.663252	2.725481	chr3	185692948	185693345	LINE|L1|L1ME4c	-	chr3	185643738	185821131	IGF2BP2|NM_001291874.1	-	185643738,185647024,185649402,185652093,185657285,185658340,185675295,185675790,185687056,185689354,185692698,185696611,185698298,185821011	185645623,185647138,185649534,185652168,185657402,185658409,185675431,185675913,185687191,185689627,185692762,185696663,185698347,185821131	0.555556
SK_MEL_5_nuclear_fraction	chr17	76345569	76345605	76345574	-	RAMPAGE_only	9	10	26	1.916061	3.777363	chr17	76345479	76345626	SINE|Alu|AluJb	+	chr17	76311385	76353225	MSTRG.25648.4	-	76311385,76312869,76313198,76328716,76330042,76332262,76344670,76348528,76353060	76311700,76313016,76313891,76328862,76330666,76332435,76344737,76348581,76353225	0.961538
SK_MEL_5_nuclear_fraction	chr9	92254065	92254094	92254082	-	RAMPAGE_only	2	2	11	0.810641	3.121928	chr9	92253901	92254117	DNA|hAT-Charlie|MER20	+	chr9	92229000	92260212	MSTRG.58966.5	-	92229000,92240855,92242153,92243215,92244958,92247376,92249857,92250186,92250712,92251807,92253361,92257803,92260150	92229126,92240961,92242330,92243311,92245071,92247551,92249941,92250289,92250834,92251885,92256800,92258998,92260212	0.909091
SK_MEL_5_nuclear_fraction	chr3	185299202	185299233	185299211	+	RAMPAGE_only	3	5	10	0.736947	3.321928	chr3	185299045	185299424	LINE|L1|L1MCc	+	chr3	185282976	185482456	MAP3K13|ENST00000424227.5	+	185282976,185285524,185428496,185437446,185443444,185447788,185449899,185451286,185463549,185465746,185466825,185472974,185477325,185480231,185482354	185283027,185285643,185429056,185437630,185443636,185447947,185450058,185451395,185463659,185465863,185466963,185473761,185477396,185480529,185482456	0.500000
SK_MEL_5_nuclear_fraction	chr18	68823241	68823242	68823241	+	High_confidence	4	4	7	0.515863	2.521641	chr18	68822847	68823421	LTR|ERV1|MER51E	+	chr18	68823373	68897793	CCDC102B|ENST00000577772.5	+	68823373,68836748,68838705,68846312,68874668,68897218,68897577	68823416,68837369,68838926,68846421,68874785,68897428,68897793	1.000000
SK_MEL_5_nuclear_fraction	chr4	12761871	12761879	12761878	-	High_confidence	184	260	612	45.101129	6.553128	chr4	12761697	12762062	LTR|ERVL-MaLR|THE1D	-	chr4	12548533	12761876	MSTRG.42512.1	-	12548533,12553068,12571216,12574972,12622654,12623708,12761779	12549486,12553220,12571286,12575165,12622790,12625156,12761876	0.535948
SK_MEL_5_nuclear_fraction	chr3	186786899	186786947	186786928	+	High_confidence	2	2	10	0.736947	2.947703	chr3	186786926	186787056	SINE|Alu|AluJb	-	chr3	186786639	186788507	EIF4A2|ENST00000497177.1	+	186786639,186787126,186787802	186786645,186787264,186788507	0.500000
SK_MEL_5_nuclear_fraction	chr11	61958360	61958378	61958375	+	RAMPAGE_only	6	6	14	1.031725	3.180833	chr11	61958407	61958585	SINE|Alu|AluSp	+	chr11	61950359	61964294	BEST1|ENST00000524877.5	+	61950359,61955106,61956843,61957386,61958145,61959891,61964103	61950427,61955951,61956998,61957464,61959578,61962893,61964294	0.928571
SK_MEL_5_nuclear_fraction	chr2	84563065	84563066	84563065	+	RAMPAGE_only	288	310	389	28.667221	6.598668	chr2	84562873	84563235	LTR|ERVL-MaLR|THE1B	+	chr2	84517822	84584791	DNAH6|ENST00000494025.1	+	84517822,84548287,84549888,84552917,84557734,84573466,84577256,84579526,84583998	84518051,84548417,84550057,84553034,84557935,84573587,84577408,84579679,84584791	0.745501
SK_MEL_5_nuclear_fraction	chr20	5009548	5009591	5009567	-	High_confidence	10	10	47	3.463649	4.985336	chr20	5009329	5009602	LINE|L2|L2c	+	chr20	5009007	5010101	MSTRG.34857.1	-	5009007	5010101	0.702128
SK_MEL_5_nuclear_fraction	chr19	9564882	9564925	9564924	-	RAMPAGE_only	3	3	12	0.884336	3.022055	chr19	9564411	9565169	DNA|TcMar-Tigger|Tigger1	+	chr19	9560352	9584497	ZNF121|ENST00000586602.5	-	9560352,9567647,9568094,9569001,9584185,9584460	9567109,9567705,9568175,9569082,9584348,9584497	1.000000
SK_MEL_5_nuclear_fraction	chr5	81408052	81408069	81408054	-	High_confidence	9	13	25	1.842366	4.088779	chr5	81407775	81408135	LTR|ERVL-MaLR|THE1D	-	chr5	81327039	81407993	MSTRG.46442.1	-	81327039,81330813,81332476,81335767,81342671,81343817,81344159,81344890,81347773,81359902,81363787,81371749,81385756,81407857	81330543,81330940,81332605,81335901,81342755,81343881,81344215,81346004,81347930,81360038,81363889,81371810,81385826,81407993	0.720000
SK_MEL_5_nuclear_fraction	chr11	74070871	74070947	74070873	-	High_confidence	10	18	61	4.495374	5.067964	chr11	74070756	74071175	LINE|L2|L2c	+	chr11	74049518	74070869	C2CD3|ENST00000542484.1	-	74049518,74054606,74057405,74070505	74049542,74054671,74057544,74070869	0.934426
SK_MEL_5_nuclear_fraction	chr9	138173037	138173124	138173098	-	High_confidence	9	9	83	6.116656	5.367171	chr9	138172875	138173155	SINE|Alu|AluSx1	+	chr9	138161574	138173129	MSTRG.60212.1	-	138161574	138173129	0.963855
SK_MEL_5_nuclear_fraction	chr3	52615372	52615445	52615372	-	High_confidence	2	3	17	1.252809	3.410417	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.941176
SK_MEL_5_nuclear_fraction	chr6	10434477	10434489	10434477	-	High_confidence	4	5	8	0.589557	2.521641	chr6	10434400	10434600	SINE|MIR|MIRb	+	chr6	10427783	10434495	MSTRG.48549.1	-	10427783,10433027	10430313,10434495	0.875000
SK_MEL_5_nuclear_fraction	chr1	238486008	238486038	238486028	-	High_confidence	15	20	91	6.706214	4.755045	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480440	238486023	LINC01139|ENST00000649681.1	-	238480440	238486023	0.967033
SK_MEL_5_nuclear_fraction	chr18	13730625	13730643	13730642	+	High_confidence	8	8	21	1.547588	3.787144	chr18	13730416	13730820	DNA|hAT-Charlie|MER119	-	chr18	13730437	13760067	RNMT|ENST00000589866.5	+	13730437,13731475,13734463,13737009,13740166,13741509,13742487,13746219,13752325,13754113,13759941	13730755,13731934,13734599,13737135,13740279,13741691,13742652,13746337,13752427,13754147,13760067	0.857143
SK_MEL_5_nuclear_fraction	chr11	93734860	93734917	93734882	-	High_confidence	5	6	22	1.621282	3.293455	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730282	93734661	TAF1D|ENST00000525928.5	-	93730282,93730676,93731149,93731752,93732243,93733086,93733349	93730447,93730712,93731216,93731799,93732291,93733121,93734661	0.909091
SK_MEL_5_nuclear_fraction	chr8	86413603	86413635	86413634	+	High_confidence	349	406	2611	192.416746	7.315424	chr8	86413309	86413645	LINE|L2|L2c	-	chr8	86413557	86467476	MSTRG.56722.6	+	86413557,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86413971,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	0.577556
SK_MEL_5_nuclear_fraction	chr22	50757018	50757042	50757018	+	High_confidence	3	3	8	0.589557	2.750000	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.500000
SK_MEL_5_nuclear_fraction	chr19	48270904	48270915	48270914	+	High_confidence	4	7	12	0.884336	2.913977	chr19	48270796	48271084	SINE|Alu|AluYc	+	chr19	48271055	48287070	ZNF114|ENST00000600687.5	+	48271055,48271286,48279730,48282370,48285760	48271119,48271449,48279808,48282497,48287070	0.833333
SK_MEL_5_nuclear_fraction	chr3	37163366	37163387	37163366	-	RAMPAGE_only	214	221	324	23.877068	7.114236	chr3	37163292	37163695	LTR|ERVL-MaLR|MLT1J2	+	chr3	37052889	37174564	LRRFIP2|ENST00000336686.8	-	37052889,37054410,37055085,37058789,37063741,37065809,37066223,37072789,37075023,37083635,37091466,37094791,37096615,37102923,37105454,37108072,37108636,37109526,37109652,37110990,37112914,37115053,37121491,37121634,37127629,37129062,37148893,37174538	37053961,37054515,37055165,37058910,37063791,37065942,37066325,37072882,37075116,37083806,37091538,37094908,37096660,37103013,37105523,37108129,37108684,37109571,37109703,37111065,37112980,37115095,37121536,37121691,37127680,37129149,37149038,37174564	0.608025
SK_MEL_5_nuclear_fraction	chrX	15492313	15492349	15492313	-	High_confidence	3	3	10	0.736947	2.947703	chrX	15492187	15492544	LINE|CR1|L3	-	chrX	15384798	15493288	MSTRG.60601.3	-	15384798,15390184,15397448,15407505,15425905,15455847,15459656,15479728,15491161,15491734	15385116,15390251,15397531,15407550,15425990,15456054,15459740,15479821,15491309,15493288	0.800000
SK_MEL_5_nuclear_fraction	chr22	29545143	29545144	29545143	-	High_confidence	24	25	27	1.989756	3.232488	chr22	29544984	29545330	LTR|ERVL-MaLR|THE1A	-	chr22	29539337	29545144	THOC5|ENST00000455450.5	-	29539337,29542858,29543428,29544459,29545060	29539476,29542956,29543542,29544603,29545144	0.888889
SK_MEL_5_nuclear_fraction	chr12	14101551	14101579	14101559	-	RAMPAGE_only	11	12	41	3.021481	4.619390	chr12	14101146	14105687	LINE|L1|L1PB1	+	chr12	13866102	13981957	GRIN2B|ENST00000630791.1	-	13866102,13979927,13981341,13981915	13866226,13980356,13981576,13981957	0.512195
SK_MEL_5_nuclear_fraction	chr4	3544591	3544624	3544613	+	High_confidence	7	8	30	2.210840	4.349192	chr4	3544561	3544648	SINE|MIR|MIRb	-	chr4	3544554	3550830	MSTRG.42306.5	+	3544554,3549825,3550616	3549591,3550584,3550830	0.966667
SK_MEL_5_nuclear_fraction	chr6	10434764	10434851	10434806	-	High_confidence	293	380	1300	95.803053	7.090875	chr6	10434600	10434992	LTR|ERVL-MaLR|MLT1B	-	chr6	10429795	10434817	LINC00518|ENST00000491317.1	-	10429795,10433027,10434247,10434512	10430313,10433253,10434426,10434817	0.794615
SK_MEL_5_nuclear_fraction	chrX	87728508	87728532	87728531	-	High_confidence	16	28	90	6.632519	4.784467	chrX	87728475	87728831	LTR|ERV1|MER61A	-	chrX	87723829	87728685	MSTRG.61518.1	-	87723829	87728685	1.000000
SK_MEL_5_nuclear_fraction	chr18	976648	976772	976648	+	High_confidence	24	24	110	8.106412	4.479305	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976696	1159311	AP005328.1|ENST00000579835.5	+	976696,1061462,1133842,1137813,1159178	976895,1061535,1133894,1137864,1159311	0.645455
SK_MEL_5_nuclear_fraction	chr13	83497359	83497496	83497491	+	High_confidence	19	19	89	6.558824	4.881467	chr13	83497304	83497510	LINE|L2|L2a	-	chr13	83496604	83520175	MSTRG.15490.1	+	83496604,83497295,83509459,83516112	83496804,83501141,83509545,83520175	0.977528
SK_MEL_5_nuclear_fraction	chr14	58456122	58456147	58456146	+	RAMPAGE_only	9	9	35	2.579313	4.718488	chr14	58455704	58456407	LINE|L1|L1M4	-	chr14	58448337	58548045	MSTRG.16968.14	+	58448337,58450578,58453349,58456701,58457758,58458472,58459842,58460985,58465834,58467734,58470612,58472198,58474606,58477122,58482512,58487006,58487886,58488643,58490163,58492143,58498782,58508554,58512521,58540070,58547780	58448493,58450746,58453473,58456810,58457979,58458545,58460070,58461160,58466029,58467922,58470723,58472279,58474797,58477241,58482712,58487166,58488084,58488874,58490240,58492275,58498960,58508709,58512627,58540136,58548045	0.914286
SK_MEL_5_nuclear_fraction	chr1	116390216	116390242	116390216	+	RAMPAGE_only	1	1	7	0.515863	2.584963	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.714286
SK_MEL_5_nuclear_fraction	chr21	32756603	32756631	32756630	-	High_confidence	2	2	7	0.515863	2.584963	chr21	32756513	32756611	LINE|RTE-X|L4_C_Mam	-	chr21	32733899	32756794	PAXBP1|ENST00000466846.5	-	32733899,32737253,32738172,32743247,32743677,32744791,32745573,32748498,32750916,32751118,32755212	32735067,32737408,32738319,32743314,32743754,32744913,32745718,32748698,32751032,32751218,32756794	0.857143
SK_MEL_5_nuclear_fraction	chr14	75847794	75847825	75847824	+	RAMPAGE_only	12	13	21	1.547588	3.041446	chr14	75847754	75847919	DNA|hAT-Charlie|MER5A	-	chr14	75882718	75902504	TTLL5|ENST00000557219.1	+	75882718,75902141	75882902,75902504	0.809524
SK_MEL_5_nuclear_fraction	chr7	119704382	119704407	119704385	-	RAMPAGE_only	4	4	15	1.105420	3.521641	chr7	119703788	119704374	LINE|L1|L1MCb	-	chr7	119698873	119713774	MSTRG.54298.6	-	119698873,119713665	119704972,119713774	0.933333
SK_MEL_5_nuclear_fraction	chr9	72874127	72874135	72874134	-	High_confidence	19	21	52	3.832122	5.127854	chr9	72873937	72874322	LTR|ERVL-MaLR|MSTA	-	chr9	72871727	72874109	MSTRG.58734.1	-	72871727,72872108	72872016,72874109	1.000000
SK_MEL_5_nuclear_fraction	chr13	23471262	23471335	23471262	+	High_confidence	4	4	34	2.505618	4.510709	chr13	23470951	23471361	LINE|L2|L2c	-	chr13	23470839	23487464	MSTRG.14414.4	+	23470839,23483833	23483501,23487464	1.000000
SK_MEL_5_nuclear_fraction	chr21	10328554	10328574	10328573	-	RAMPAGE_only	4	4	10	0.736947	2.641604	chr21	10328293	10328546	LINE|L1|L1MCa	-	chr21	10325559	10342713	MSTRG.36198.1	-	10325559	10342713	0.900000
SK_MEL_5_nuclear_fraction	chrX	15491765	15491781	15491780	-	RAMPAGE_only	2	2	7	0.515863	2.584963	chrX	15491578	15491946	DNA|TcMar-Tigger|Tigger3a	+	chrX	15384798	15493288	MSTRG.60601.3	-	15384798,15390184,15397448,15407505,15425905,15455847,15459656,15479728,15491161,15491734	15385116,15390251,15397531,15407550,15425990,15456054,15459740,15479821,15491309,15493288	0.571429
SK_MEL_5_nuclear_fraction	chr20	3795750	3795823	3795750	+	High_confidence	23	31	138	10.169862	5.002945	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.963768
SK_MEL_5_nuclear_fraction	chr13	70249803	70249851	70249850	+	High_confidence	6	6	15	1.105420	3.467720	chr13	70249527	70250006	LTR|ERVL|MER70B	+	chr13	70249996	70251544	MSTRG.15309.2	+	70249996,70250901	70250396,70251544	0.866667
SK_MEL_5_nuclear_fraction	chrX	135893381	135893412	135893381	-	High_confidence	41	47	122	8.990748	5.583035	chrX	135893277	135893550	LTR|ERVL|LTR41	-	chrX	135880751	135893428	CT45A10|NM_001291529.1	-	135880751,135882535,135883007,135885175,135893344	135881315,135882629,135883256,135885350,135893428	0.918033
SK_MEL_5_nuclear_fraction	chr17	60646058	60646059	60646058	+	RAMPAGE_only	4	4	6	0.442168	2.584963	chr17	60645871	60646103	SINE|Alu|AluJo	+	chr17	60600268	60664473	PPM1D|ENST00000392995.7	+	60600268,60623520,60633852,60647891,60656598,60656931,60662994	60600886,60623749,60633977,60648082,60656841,60657042,60664473	0.500000
SK_MEL_5_nuclear_fraction	chr11	2972386	2972395	2972386	-	RAMPAGE_only	10	10	16	1.179114	2.706891	chr11	2972339	2972686	LINE|L1|L1M5	+	chr11	2971449	2989268	NAP1L4|ENST00000530064.5	-	2971449,2972101,2976023,2978283,2979206,2983745,2989128	2971534,2972243,2976123,2978342,2979237,2983813,2989268	0.875000
SK_MEL_5_nuclear_fraction	chr15	82093996	82094008	82094007	+	RAMPAGE_only	8	8	14	1.031725	3.026987	chr15	82093781	82094459	DNA|TcMar-Tigger|Tigger7	+	chr15	82088632	82095707	LINC01583|ENST00000559788.1	+	82088632,82091726,82095481	82088728,82091935,82095707	0.642857
SK_MEL_5_nuclear_fraction	chr1	60825838	60825875	60825838	-	High_confidence	14	14	36	2.653008	4.650572	chr1	60825624	60825834	SINE|MIR|MIRb	-	chr1	60659630	60825584	AC099792.1|ENST00000423403.1	-	60659630,60662984,60729574,60732446,60733463,60825335	60661470,60663025,60729667,60732508,60733522,60825584	0.527778
SK_MEL_5_nuclear_fraction	chr2	191682538	191682576	191682575	+	RAMPAGE_only	4	4	10	0.736947	2.646439	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678531	191686157	MSTRG.33610.11	+	191678531,191678989,191681945,191682491,191684229,191684876	191678705,191679128,191682017,191683804,191684296,191686157	1.000000
SK_MEL_5_nuclear_fraction	chr5	114433510	114433511	114433510	+	High_confidence	127	128	132	9.727695	4.986188	chr5	114432499	114433929	LTR|ERV1|LTR12C	+	chr5	114433529	114496500	KCNN2|NR_103458.1	+	114433529,114463048,114473053,114486697,114487049,114493402,114495894	114433929,114463190,114473164,114486803,114487177,114493472,114496500	0.863636
SK_MEL_5_nuclear_fraction	chr13	70249679	70249680	70249679	+	High_confidence	228	244	244	17.981496	6.524507	chr13	70249527	70250006	LTR|ERVL|MER70B	+	chr13	70249686	70258649	MSTRG.15309.1	+	70249686,70253329	70250396,70258649	0.971311
SK_MEL_5_nuclear_fraction	chr14	32075879	32075884	32075879	+	High_confidence	39	41	81	5.969267	5.302440	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076113	32155011	MSTRG.16353.2	+	32076113,32076457,32090501,32117139,32146262,32149901,32152422,32154620	32076217,32076657,32094386,32117287,32146340,32150033,32152528,32155011	0.925926
SK_MEL_5_nuclear_fraction	chr18	14752252	14752295	14752274	+	RAMPAGE_only	3	3	17	1.252809	3.690117	chr18	14752135	14752389	SINE|MIR|MIRb	-	chr18	14748334	14817089	ANKRD30B|ENST00000580206.1	+	14748334,14752565,14752838,14754898,14757814,14760553,14763685,14769342,14772155,14777984,14779959,14782526,14784335,14784462,14787038,14791400,14796342,14797660,14797781,14799100,14799222,14802216,14803733,14808550,14808671,14809985,14810107,14813103,14814620,14816357	14748640,14752680,14753012,14755005,14757952,14760618,14764090,14769373,14772228,14778075,14780021,14782614,14784364,14784535,14787100,14791491,14796415,14797689,14797854,14799129,14799295,14802278,14803824,14808579,14808744,14810014,14810180,14813165,14814711,14817089	0.588235
SK_MEL_5_nuclear_fraction	chr5	70401444	70401512	70401467	+	RAMPAGE_only	19	27	231	17.023465	5.960993	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.939394
SK_MEL_5_nuclear_fraction	chr7	104754365	104754562	104754561	-	RAMPAGE_only	11	11	132	9.727695	4.278911	chr7	104754412	104754656	SINE|MIR|MIR	+	chr7	104738597	104804084	MSTRG.53976.2	-	104738597,104744049,104752714,104761473,104785219,104798336,104802838,104803955	104738955,104744180,104759822,104761580,104786581,104800069,104802963,104804084	0.992424
SK_MEL_5_nuclear_fraction	chr9	5896149	5896167	5896166	+	RAMPAGE_only	4	4	9	0.663252	2.725481	chr9	5896134	5896319	SINE|MIR|MIRb	+	chr9	5890907	5934901	MSTRG.57909.4	+	5890907,5892449,5906884,5908639,5916012,5931765,5934547	5890936,5897653,5906998,5908834,5916195,5931826,5934901	1.000000
SK_MEL_5_nuclear_fraction	chr1	240339116	240339120	240339116	+	RAMPAGE_only	12	12	23	1.694977	4.277613	chr1	240338677	240339204	DNA|hAT-Charlie|MER1A	-	chr1	240329143	240475183	FMN2|ENST00000545751.2	+	240329143,240329338,240330602,240333886,240334108,240334120,240355815,240392510,240438060,240472371,240474127	240329167,240329468,240330749,240333946,240334118,240334229,240355908,240392562,240438210,240472453,240475183	0.521739
SK_MEL_5_nuclear_fraction	chr12	31121333	31121338	31121337	-	RAMPAGE_only	6	6	10	0.736947	2.921928	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111656	31119158	MSTRG.12065.3	-	31111656,31112213,31112980,31114395,31114836,31116356,31117040,31118896	31111809,31112288,31113041,31114464,31114927,31116469,31117164,31119158	0.900000
SK_MEL_5_nuclear_fraction	chr7	6257768	6257798	6257785	-	High_confidence	84	84	591	43.553542	6.944913	chr7	6257761	6258020	LTR|ERVL-MaLR|MLT1L	-	chr7	6161775	6257802	MSTRG.51914.1	-	6161775,6165272,6165544,6165733,6170534,6170829,6171201,6172730,6177822,6187049,6187656,6190448,6257735	6165016,6165427,6165616,6165810,6170646,6170978,6171314,6173733,6177941,6187116,6187721,6190531,6257802	0.575296
SK_MEL_5_nuclear_fraction	chrX	21770658	21770763	21770670	-	High_confidence	88	138	963	70.967954	5.847618	chrX	21770311	21772190	LINE|L1|L1PB1	+	chrX	21706337	21770832	MSTRG.60701.6	-	21706337,21737548,21743749,21754245,21757941,21766271	21706394,21737697,21743836,21754302,21761942,21770832	0.997923
SK_MEL_5_nuclear_fraction	chrX	97160141	97160189	97160188	+	RAMPAGE_only	11	11	72	5.306015	5.209352	chrX	97159909	97160444	LTR|ERV1|LTR26	-	chrX	96762929	97429734	MSTRG.61610.6	+	96762929,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348115,97383908,97429649	96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247839,97348280,97384044,97429734	0.833333
SK_MEL_5_nuclear_fraction	chr8	69777481	69777482	69777481	-	RAMPAGE_only	4	4	6	0.442168	2.584963	chr8	69776742	69777507	LINE|L1|L1ME1	+	chr8	69672662	69832715	SLCO5A1|ENST00000530307.1	-	69672662,69676608,69679377,69682183,69705030,69755423,69761742,69831766	69673326,69676673,69679619,69682343,69705229,69755641,69761875,69832715	0.500000
SK_MEL_5_nuclear_fraction	chr4	10565214	10565255	10565214	-	RAMPAGE_only	3	3	15	1.105420	3.807355	chr4	10564990	10565295	LINE|L2|L2b	+	chr4	10490214	10598681	CLNK|ENST00000442825.6	-	10490214,10501255,10507958,10513463,10520790,10525840,10528075,10532255,10540493,10542021,10542254,10558406,10564670,10566008,10571740,10584926,10597977,10598675	10490613,10501411,10508036,10513597,10520831,10525922,10528094,10532283,10540604,10542041,10542280,10558452,10564777,10566150,10571778,10584955,10598054,10598681	0.666667
SK_MEL_5_nuclear_fraction	chr8	62164901	62164909	62164908	-	High_confidence	7	9	15	1.105420	3.906891	chr8	62164702	62165238	LINE|L1|L1PB1	+	chr8	62129604	62164821	MSTRG.56244.1	-	62129604,62164568	62135746,62164821	0.600000
SK_MEL_5_nuclear_fraction	chr3	157381677	157381716	157381677	-	High_confidence	95	101	570	42.005954	6.855559	chr3	157381425	157381750	SINE|Alu|AluSz6	+	chr3	157363691	157381673	VEPH1|ENST00000488772.1	-	157363691,157364302,157381155,157381593	157363761,157364512,157381376,157381673	0.771930
SK_MEL_5_nuclear_fraction	chr4	154708784	154708785	154708784	+	High_confidence	6	7	7	0.515863	2.584963	chr4	154708547	154708841	SINE|Alu|AluYm1	-	chr4	154708255	154753118	MSTRG.44581.9	+	154708255,154728702,154736026,154748983	154708334,154731786,154736138,154753118	0.714286
SK_MEL_5_nuclear_fraction	chr14	29940733	29940750	29940749	+	High_confidence	4	4	9	0.663252	2.725481	chr14	29940519	29940931	LTR|ERVL-MaLR|MSTA	+	chr14	29940744	29980212	AL133372.3|ENST00000553082.1	+	29940744,29954884,29965322,29966279,29979836	29940849,29954992,29965502,29966331,29980212	0.666667
SK_MEL_5_nuclear_fraction	chr15	41365738	41365769	41365764	+	High_confidence	5	7	22	1.621282	2.701609	chr15	41365708	41366019	SINE|Alu|AluSc8	-	chr15	41365746	41377288	NUSAP1|ENST00000560318.1	+	41365746,41371526,41375711,41377195	41365863,41371684,41375828,41377288	0.772727
SK_MEL_5_nuclear_fraction	chr11	65428348	65428578	65428514	+	RAMPAGE_only	44	63	263	19.381694	5.668814	chr11	65428531	65428593	DNA|hAT-Tip100|MamRep4096	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
SK_MEL_5_nuclear_fraction	chr11	14681456	14681466	14681465	+	RAMPAGE_only	12	12	27	1.989756	4.106377	chr11	14681274	14681591	LTR|ERVL-MaLR|THE1B	+	chr11	14643722	14872059	PDE3B|NM_000922.3	+	14643722,14771936,14786436,14789105,14803943,14818182,14819135,14830697,14831639,14832721,14834981,14843826,14859042,14861204,14867505,14869460	14645053,14771987,14786685,14789242,14804050,14818393,14819209,14830846,14831777,14832833,14835095,14844026,14859246,14861366,14867758,14872059	0.666667
SK_MEL_5_nuclear_fraction	chr1	239629300	239629364	239629300	+	RAMPAGE_only	2	2	19	1.400198	3.721612	chr1	239623498	239629523	LINE|L1|L1HS	-	chr1	239386564	239886596	CHRM3|ENST00000468573.5	+	239386564,239492708,239545640,239632223,239678185,239718795,239826852,239827251,239886088	239387227,239492807,239545749,239632286,239678288,239718899,239827081,239827378,239886596	0.526316
SK_MEL_5_nuclear_fraction	chr11	108224074	108224093	108224074	+	High_confidence	545	557	1036	76.347663	7.339155	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.709459
SK_MEL_5_nuclear_fraction	chr1	74266258	74266264	74266261	+	High_confidence	54	63	130	9.580305	5.354954	chr1	74266004	74266559	LTR|ERVL-MaLR|MLT1G	-	chr1	74266273	74376313	MSTRG.2217.17	+	74266273,74271597,74331449,74336010,74342841,74343074,74353265,74353979,74367255,74367907,74369021,74369206,74369390,74370287	74266339,74271708,74331548,74336149,74342986,74343179,74353360,74354129,74367342,74367964,74369114,74369264,74369585,74376313	0.761538
SK_MEL_5_nuclear_fraction	chr11	65431957	65431998	65431957	+	RAMPAGE_only	5	5	15	1.105420	3.664498	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.933333
SK_MEL_5_nuclear_fraction	chr12	9399426	9399469	9399426	-	RAMPAGE_only	5	5	19	1.400198	3.572431	chr12	9398769	9399468	LINE|L1|L1MA9	+	chr12	9397039	9407536	MSTRG.11558.2	-	9397039,9401746,9402426,9406307	9400326,9401859,9402556,9407536	0.947368
SK_MEL_5_nuclear_fraction	chr1	150729865	150729868	150729867	-	High_confidence	5	9	10	0.736947	2.947703	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150646224	150729978	MSTRG.3470.1	-	150646224,150661813,150663631,150694655,150696991,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150717137,150719472,150729141,150729573	150648748,150661928,150663763,150694850,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150717282,150719538,150729225,150729978	0.800000
SK_MEL_5_nuclear_fraction	chr7	104759554	104759818	104759575	-	RAMPAGE_only	9	9	170	12.528091	5.568475	chr7	104759319	104759593	DNA|hAT-Charlie|MER33	-	chr7	104738597	104804084	MSTRG.53976.2	-	104738597,104744049,104752714,104761473,104785219,104798336,104802838,104803955	104738955,104744180,104759822,104761580,104786581,104800069,104802963,104804084	0.958824
SK_MEL_5_nuclear_fraction	chr7	119706441	119706653	119706519	-	RAMPAGE_only	20	20	159	11.717450	6.097176	chr7	119705200	119707009	LINE|L1|L1MCb	-	chr7	119699239	119713774	MSTRG.54298.7	-	119699239,119713665	119706671,119713774	1.000000
SK_MEL_5_nuclear_fraction	chr9	67613824	67613841	67613824	-	RAMPAGE_only	3	3	17	1.252809	2.702820	chr9	67613657	67613994	LTR|ERVL|MER74B	-	chr9	67612665	67614829	MSTRG.58626.1	-	67612665	67614829	0.941176
SK_MEL_5_nuclear_fraction	chrX	74000233	74000299	74000233	+	RAMPAGE_only	4	4	25	1.842366	4.003856	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	1.000000
SK_MEL_5_nuclear_fraction	chr8	89587131	89587240	89587131	-	RAMPAGE_only	21	22	91	6.706214	5.350147	chr8	89585839	89587570	LINE|L1|L1PA14	-	chr8	89584950	89611889	MSTRG.56772.4	-	89584950,89596418,89596933,89611433	89588050,89596512,89609494,89611889	0.956044
SK_MEL_5_nuclear_fraction	chr4	39544055	39544056	39544055	-	High_confidence	274	280	309	22.771649	6.360212	chr4	39543948	39544368	LTR|ERVK|LTR3B	-	chr4	39539316	39544131	MSTRG.42956.1	-	39539316,39543823	39539775,39544131	0.731392
SK_MEL_5_nuclear_fraction	chr10	29555202	29555222	29555209	-	RAMPAGE_only	3	3	12	0.884336	3.251629	chr10	29555165	29555303	LINE|L2|L2a	-	chr10	29457347	29634972	SVIL|NM_021738.2	-	29457347,29458433,29462276,29463491,29465594,29467741,29470275,29471137,29473837,29480536,29481583,29484655,29486084,29486409,29487162,29488600,29490846,29493213,29494913,29495091,29499115,29512734,29522409,29523450,29524471,29526960,29529704,29530606,29531253,29532001,29532528,29535988,29550596,29554782,29555050,29563200,29569254,29634419	29458333,29458589,29462401,29463635,29465750,29467875,29470483,29471243,29473989,29480813,29481728,29484831,29486230,29486557,29487299,29488756,29491019,29493391,29495000,29495181,29499263,29512861,29522635,29524027,29524715,29527056,29529844,29530668,29531288,29532172,29533458,29536069,29551263,29554934,29555108,29563292,29569312,29634972	0.666667
SK_MEL_5_nuclear_fraction	chr3	135974319	135974344	135974343	+	High_confidence	3	4	11	0.810641	3.095795	chr3	135974357	135974696	LINE|L2|L2b	+	chr3	135974532	136087886	MSTRG.40896.4	+	135974532,136001058,136026831,136040858,136049258,136070477,136078366,136079149,136082264,136087882	135974597,136003493,136027098,136040962,136049361,136070552,136078453,136079283,136082421,136087886	0.727273
SK_MEL_5_nuclear_fraction	chr17	59651196	59651232	59651196	+	RAMPAGE_only	1	1	6	0.442168	2.584963	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.833333
SK_MEL_5_nuclear_fraction	chr21	38121472	38121492	38121472	+	High_confidence	137	140	351	25.866824	5.632306	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.840456
SK_MEL_5_nuclear_fraction	chr14	102246140	102246153	102246152	-	High_confidence	7	7	17	1.252809	3.734522	chr14	102246005	102246172	LTR|ERV1|HUERS-P3-int	+	chr14	102229119	102246159	MOK|ENST00000519058.5	-	102229119,102232534,102233687,102246056	102229657,102232708,102233789,102246159	0.764706
SK_MEL_5_nuclear_fraction	chr11	65431483	65431515	65431483	+	RAMPAGE_only	4	4	17	1.252809	3.616875	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
SK_MEL_5_nuclear_fraction	chr12	26832778	26832798	26832778	-	High_confidence	2	2	7	0.515863	2.521641	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.714286
SK_MEL_5_nuclear_fraction	chr14	24644616	24644976	24644862	+	RAMPAGE_only	10	10	157	11.570061	3.378167	chr14	24644783	24645147	LINE|L1|L1PBb	+	chr14	24595849	24658780	MSTRG.16199.7	+	24595849,24622967,24623403,24639902,24643264,24657524	24596002,24623126,24623470,24640628,24654707,24658780	0.974522
SK_MEL_5_nuclear_fraction	chr2	37928719	37928737	37928719	+	High_confidence	3	3	10	0.736947	3.121928	chr2	37928485	37928833	LINE|L2|L2	+	chr2	37928758	38017744	RMDN2|ENST00000406384.5	+	37928758,37929261,37974039,37975211,37981282,37989540,37991219,37997415,38003990,38004135,38017185	37928936,37929729,37974214,37975314,37981343,37989616,37991297,37997514,38004044,38004216,38017744	1.000000
SK_MEL_5_nuclear_fraction	chr1	25244869	25244897	25244869	-	High_confidence	4	4	13	0.958031	3.251629	chr1	25244696	25244960	SINE|Alu|AluJb	-	chr1	25244070	25245208	RSRP1|ENST00000491378.1	-	25244070,25245149	25244498,25245208	0.769231
SK_MEL_5_nuclear_fraction	chr7	104789072	104789090	104789072	-	RAMPAGE_only	6	6	15	1.105420	3.189898	chr7	104788851	104789251	DNA|TcMar-Tigger|MamRep137	-	chr7	104768668	104804084	MSTRG.53976.7	-	104768668,104785219,104785730,104802838,104803955	104779346,104785378,104800069,104802963,104804084	1.000000
SK_MEL_5_nuclear_fraction	chr15	28977450	28977451	28977450	-	High_confidence	5	5	8	0.589557	2.500000	chr15	28977093	28977411	LTR|ERVL-MaLR|MLT1A0	-	chr15	28970195	28977464	AC127522.1|ENST00000560531.1	-	28970195,28977030	28970512,28977464	0.500000
SK_MEL_5_nuclear_fraction	chr7	104790640	104790811	104790801	-	RAMPAGE_only	23	23	154	11.348977	5.945588	chr7	104790768	104790934	SINE|MIR|MIRc	+	chr7	104768668	104804084	MSTRG.53976.7	-	104768668,104785219,104785730,104802838,104803955	104779346,104785378,104800069,104802963,104804084	0.974026
SK_MEL_5_nuclear_fraction	chr3	9390680	9390704	9390703	-	High_confidence	3	3	11	0.810641	2.721928	chr3	9390668	9390765	LINE|L2|L2	+	chr3	9385835	9390619	THUMPD3-AS1|ENST00000523354.1	-	9385835,9388086,9390289	9385923,9388127,9390619	0.727273
SK_MEL_5_nuclear_fraction	chr7	91173440	91173441	91173440	+	RAMPAGE_only	22	23	28	2.063450	4.254525	chr7	91173443	91179517	LINE|L1|L1HS	+	chr7	90709815	91210589	CDK14|ENST00000436577.3	+	90709815,90726566,90790572,90863174,90899290,90917600,90955696,90984147,91045896,91079431,91112541,91118064,91207164	90709957,90726812,90790652,90863269,90899353,90917724,90955817,90984241,91045960,91079480,91112681,91118208,91210589	0.571429
SK_MEL_5_nuclear_fraction	chr17	59209399	59209418	59209399	+	High_confidence	3	5	9	0.663252	2.725481	chr17	59209373	59209528	SINE|Alu|AluSx3	-	chr17	59209399	59215239	SMG8|ENST00000543872.6	+	59209399,59209899,59212340,59212728,59214804	59209511,59211810,59212486,59213601,59215239	0.666667
SK_MEL_5_nuclear_fraction	chr14	67821184	67821187	67821184	+	RAMPAGE_only	6	6	10	0.736947	2.921928	chr14	67821104	67821321	LINE|L2|L2c	+	chr14	67819828	68730218	RAD51B|ENST00000488612.5	+	67819828,67823541,67825463,67835079,67865002,67885868,67887020,68291883,68411423,68468171,68650780,68729807	67819853,67823627,67825577,67835196,67865139,67885988,67887204,68291980,68411527,68468250,68650856,68730218	0.600000
SK_MEL_5_nuclear_fraction	chr5	27476112	27476246	27476173	+	RAMPAGE_only	4	4	57	4.200595	5.069340	chr5	27472714	27477542	LTR|ERV1|MER61-int	+	chr5	27472291	27496280	MSTRG.45475.4	+	27472291,27475534,27484925,27492405	27472519,27478916,27492323,27496280	0.947368
SK_MEL_5_nuclear_fraction	chr21	10329583	10329603	10329583	-	RAMPAGE_only	4	4	10	0.736947	2.921928	chr21	10329054	10329665	LINE|L1|L1M5	-	chr21	10325559	10342713	MSTRG.36198.1	-	10325559	10342713	1.000000
SK_MEL_5_nuclear_fraction	chr16	8112723	8112756	8112755	-	High_confidence	44	46	88	6.485130	4.821307	chr16	8112558	8112855	SINE|Alu|AluY	+	chr16	8112280	8112536	MSTRG.21038.1	-	8112280	8112536	0.556818
SK_MEL_5_nuclear_fraction	chr11	65431294	65431313	65431312	+	RAMPAGE_only	3	3	7	0.515863	2.584963	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.857143
SK_MEL_5_nuclear_fraction	chr19	9323748	9323749	9323748	+	High_confidence	20	20	27	1.989756	3.574358	chr19	9323408	9324010	LTR|ERV1|MER51A	+	chr19	9323771	9343845	ZNF559|NM_001202411.1	+	9323771,9324694,9333014,9338493,9339192,9341101,9341616	9324228,9324780,9333113,9338582,9339319,9341184,9343845	1.000000
SK_MEL_5_nuclear_fraction	chr6	8652268	8652328	8652268	+	High_confidence	4	5	28	2.063450	4.286790	chr6	8652094	8652454	LTR|ERVL-MaLR|MLT1A	+	chr6	8652261	8653814	AL591485.1|ENST00000646741.1	+	8652261,8653544	8653136,8653814	0.642857
SK_MEL_5_nuclear_fraction	chr7	119700709	119700727	119700709	-	RAMPAGE_only	2	2	9	0.663252	3.000000	chr7	119700707	119700958	LINE|L1|L1M5	-	chr7	119698873	119713774	MSTRG.54298.6	-	119698873,119713665	119704972,119713774	0.777778
SK_MEL_5_nuclear_fraction	chr11	90620564	90620593	90620564	+	High_confidence	2	2	11	0.810641	3.321928	chr11	90619930	90625234	LINE|L1|L1PA13	+	chr11	90620159	90621071	MSTRG.10416.1	+	90620159	90621071	0.636364
SK_MEL_5_nuclear_fraction	chr19	34075778	34075821	34075778	-	RAMPAGE_only	228	318	831	61.240259	6.848830	chr19	34075699	34076456	LTR|ERV1|LTR8B	+	chr19	33996949	34061495	MSTRG.28508.1	-	33996949,34000340,34003594,34005338,34061381	33998551,34000398,34003707,34005421,34061495	0.626955
SK_MEL_5_nuclear_fraction	chr7	23247386	23247387	23247386	+	High_confidence	4	4	6	0.442168	2.584963	chr7	23247430	23247586	DNA|hAT-Charlie|MER5B	+	chr7	23246765	23253367	GPNMB|ENST00000459927.5	+	23246765,23247740,23250761,23253306	23246927,23247993,23250862,23253367	0.666667
SK_MEL_5_nuclear_fraction	chr5	81407938	81407939	81407938	-	High_confidence	449	469	637	46.943496	7.694515	chr5	81407775	81408135	LTR|ERVL-MaLR|THE1D	-	chr5	81330452	81407993	MSTRG.46442.4	-	81330452,81330813,81332476,81335767,81342671,81343817,81344159,81344890,81347773,81358386,81359902,81363787,81371749,81385756,81407893	81330543,81330940,81332605,81335901,81342755,81343881,81344215,81346004,81347930,81358842,81360038,81363889,81371810,81385826,81407993	0.643642
SK_MEL_5_nuclear_fraction	chr1	150729704	150729727	150729704	-	High_confidence	5	6	19	1.400198	3.683542	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150646224	150729978	MSTRG.3470.1	-	150646224,150661813,150663631,150694655,150696991,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150717137,150719472,150729141,150729573	150648748,150661928,150663763,150694850,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150717282,150719538,150729225,150729978	0.789474
SK_MEL_5_nuclear_fraction	chr6	132134141	132134206	132134141	+	High_confidence	6	6	31	2.284534	4.481728	chr6	132134140	132134291	DNA|hAT-Tip100|MamTip2	+	chr6	132134627	132135043	MSTRG.50990.1	+	132134627	132135043	0.580645
SK_MEL_5_nuclear_fraction	chr5	14202692	14202801	14202696	+	High_confidence	221	237	820	60.429618	6.878350	chr5	14202502	14202919	LTR|ERVL-MaLR|THE1B	+	chr5	14202706	14290887	MSTRG.45331.7	+	14202706,14270824,14280321,14286870,14290715	14203314,14270899,14280436,14287063,14290887	0.847561
SK_MEL_5_nuclear_fraction	chr2	29223864	29223867	29223866	-	High_confidence	3	5	8	0.589557	2.807355	chr2	29223782	29224196	LTR|ERVL|LTR16B2	-	chr2	29192773	29223900	ALK|ENST00000642122.1	-	29192773,29196769,29197541,29207170,29209785,29213983,29220705,29222343,29222516,29223341	29193922,29196860,29197676,29207272,29209878,29214081,29220835,29222408,29222607,29223900	0.750000
SK_MEL_5_nuclear_fraction	chr18	14848370	14848407	14848404	+	RAMPAGE_only	7	7	24	1.768672	4.152391	chr18	14848312	14848637	LINE|L2|L2a	+	chr18	14837148	14852738	ANKRD30B|ENST00000320584.8	+	14837148,14837614,14840587,14842896,14843023,14848715,14850213,14851508	14837289,14837676,14840678,14842925,14843096,14848929,14850382,14852738	0.875000
SK_MEL_5_nuclear_fraction	chr6	52955040	52955041	52955040	+	RAMPAGE_only	6	6	6	0.442168	2.584963	chr6	52955078	52955376	SINE|Alu|AluSz6	+	chr6	52995619	52995950	RF00100|ENST00000365328.1	+	52995619	52995950	1.000000
SK_MEL_5_nuclear_fraction	chr4	47952947	47952957	47952947	-	High_confidence	6	8	11	0.810641	3.277613	chr4	47952778	47953143	LTR|ERVL-MaLR|THE1B	-	chr4	47942916	47952689	CNGA1|ENST00000506118.1	-	47942916,47943370,47949832,47951352,47952582	47943288,47943412,47949895,47951469,47952689	1.000000
SK_MEL_5_nuclear_fraction	chr2	12363165	12363220	12363219	+	RAMPAGE_only	2	2	9	0.663252	3.000000	chr2	12362875	12363431	LTR|ERVL|MLT2B3	+	chr2	12314316	12398651	MSTRG.30145.10	+	12314316,12397521	12314405,12398651	0.555556
SK_MEL_5_nuclear_fraction	chr3	142347649	142347671	142347654	-	RAMPAGE_only	9	11	27	1.989756	3.940073	chr3	142347601	142347897	SINE|Alu|AluSz6	-	chr3	142309391	142412655	XRN1|ENST00000498077.6	-	142309391,142312597,142318591,142318789,142329433,142332374,142332966,142335447,142347233,142355400,142356911,142359861,142365046,142365309,142370484,142371238,142375797,142376478,142380081,142383299,142384522,142397328,142400443,142403673,142403868,142404906,142412543	142311813,142312758,142318694,142318903,142329615,142332534,142333089,142335509,142347342,142355496,142357119,142359931,142365179,142365366,142370620,142371328,142375944,142376594,142380180,142383413,142384685,142397460,142400547,142403772,142403989,142405073,142412655	0.518519
SK_MEL_5_nuclear_fraction	chr7	104753343	104753396	104753343	-	RAMPAGE_only	5	5	29	2.137145	3.973447	chr7	104753220	104753375	DNA|TcMar-Tigger|Tigger16a	-	chr7	104738597	104804084	MSTRG.53976.2	-	104738597,104744049,104752714,104761473,104785219,104798336,104802838,104803955	104738955,104744180,104759822,104761580,104786581,104800069,104802963,104804084	0.896552
SK_MEL_5_nuclear_fraction	chr21	45270353	45270358	45270353	-	RAMPAGE_only	7	11	22	1.621282	4.095795	chr21	45270269	45270409	LINE|L1|L1PB1	+	chr21	45265399	45283494	MSTRG.36884.12	-	45265399,45265686,45269838,45277016,45278102,45282348,45283382	45265653,45267713,45270019,45277142,45278169,45282459,45283494	0.500000
SK_MEL_5_nuclear_fraction	chr1	225473571	225473572	225473571	-	RAMPAGE_only	57	57	58	4.274290	5.053831	chr1	225472522	225473899	LTR|ERV1|LTR12C	+	chr1	225429330	225465377	MSTRG.5107.1	-	225429330,225461540	225440124,225465377	0.879310
SK_MEL_5_nuclear_fraction	chr7	104804441	104804442	104804441	-	High_confidence	26	26	35	2.579313	4.822001	chr7	104804405	104804953	LTR|ERVL-MaLR|MLT1F2	+	chr7	104796515	104804107	LHFPL3-AS1|ENST00000434579.6	-	104796515,104798336,104799817,104802838,104803955	104796949,104798407,104800069,104802963,104804107	0.885714
SK_MEL_5_nuclear_fraction	chr8	83448052	83448202	83448052	+	RAMPAGE_only	19	19	106	7.811634	5.300012	chr8	83447142	83453169	LINE|L1|L1PA2	+	chr8	83403757	83452973	MSTRG.56635.3	+	83403757,83447126	83416196,83452973	1.000000
SK_MEL_5_nuclear_fraction	chr11	65432064	65432130	65432129	+	RAMPAGE_only	10	10	30	2.210840	4.349192	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.966667
SK_MEL_5_nuclear_fraction	chr12	9568962	9568982	9568962	+	RAMPAGE_only	12	12	27	1.989756	3.475085	chr12	9568603	9569205	LTR|ERV1|HERVE-int	-	chr12	9558385	9576294	MSTRG.11559.12	+	9558385,9559174,9560109,9560816,9564159,9565091,9567489,9569057,9570765,9571460,9573002,9573465,9574846,9575642,9576117	9558452,9559348,9560191,9562976,9564325,9565303,9567567,9569202,9570892,9571573,9573093,9573534,9574949,9575717,9576294	0.925926
SK_MEL_5_nuclear_fraction	chr17	42815090	42815091	42815090	-	High_confidence	9	10	13	0.958031	3.251629	chr17	42814830	42815625	LINE|L2|L2b	+	chr17	42813902	42815014	BECN1|ENST00000589492.1	-	42813902,42814523	42814008,42815014	0.692308
SK_MEL_5_nuclear_fraction	chr2	3536862	3536899	3536872	-	RAMPAGE_only	4	5	19	1.400198	3.787144	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531983	3558289	MSTRG.29994.2	-	3531983,3533107,3533710,3536197,3536723,3545700,3547930,3548639,3549057,3550372,3552143,3556788,3558132	3532310,3533190,3534255,3536313,3536911,3545871,3548055,3548720,3549112,3550472,3552308,3556904,3558289	0.578947
SK_MEL_5_nuclear_fraction	chr17	69268786	69268840	69268816	-	High_confidence	3	3	15	1.105420	3.807355	chr17	69268468	69268963	LTR|ERVL|LTR105_Mam	+	chr17	69248259	69268874	ABCA5|ENST00000586811.1	-	69248259,69249904,69250471,69251746,69253572,69253793,69254314,69255542,69255732,69256156,69259705,69260337,69261124,69261634,69264734,69267942,69268719	69248317,69249984,69250621,69251866,69253667,69253869,69254490,69255634,69255850,69256283,69259797,69260412,69261259,69261748,69264905,69268056,69268874	0.600000
SK_MEL_5_nuclear_fraction	chr6	13307914	13307977	13307941	-	RAMPAGE_only	14	14	36	2.653008	4.275415	chr6	13307934	13308023	DNA|hAT-Blackjack|MER81	-	chr6	13306644	13328544	TBC1D7|ENST00000607532.5	-	13306644,13316570,13320907,13325093,13326786,13328295	13307745,13316708,13321095,13325174,13326906,13328544	0.916667
SK_MEL_5_nuclear_fraction	chr9	100429503	100429550	100429549	+	High_confidence	54	55	167	12.307008	5.774864	chr9	100429405	100429575	LINE|L2|L2b	-	chr9	100429513	100451734	MSANTD3|NM_001198806.1	+	100429513,100441905,100450556	100429662,100442356,100451734	0.646707
SK_MEL_5_nuclear_fraction	chr7	104789184	104789278	104789184	-	RAMPAGE_only	3	3	26	1.916061	4.251629	chr7	104788851	104789251	DNA|TcMar-Tigger|MamRep137	-	chr7	104768668	104804084	MSTRG.53976.7	-	104768668,104785219,104785730,104802838,104803955	104779346,104785378,104800069,104802963,104804084	0.923077
SK_MEL_5_nuclear_fraction	chr14	102235451	102235481	102235458	-	High_confidence	347	351	1675	123.438548	5.021412	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.939701
SK_MEL_5_nuclear_fraction	chr8	86822483	86822484	86822483	+	RAMPAGE_only	7	7	9	0.663252	2.725481	chr8	86822298	86822668	LTR|ERVL-MaLR|THE1D	+	chr8	86866441	86939816	CNBD1|ENST00000517748.1	+	86866441,86887541,86905080,86939595	86866583,86887611,86905194,86939816	0.666667
SK_MEL_5_nuclear_fraction	chr5	80456151	80456167	80456163	+	RAMPAGE_only	3	3	9	0.663252	3.000000	chr5	80456163	80456219	LINE|CR1|CR1-3_Croc	+	chr5	80453988	80479118	ZFYVE16|ENST00000512907.5	+	80453988,80456944,80459413,80472760,80473753,80474662,80477218	80456565,80457092,80459494,80472923,80473859,80474830,80479118	0.888889
SK_MEL_5_nuclear_fraction	chr2	71423276	71423286	71423276	+	RAMPAGE_only	2	3	10	0.736947	2.947703	chr2	71423244	71423287	DNA|hAT-Ac|OldhAT1	+	chr2	71416333	71435058	MSTRG.31433.25	+	71416333,71422813,71424649,71426459,71431326,71433164,71434741	71418639,71424038,71424715,71427414,71431428,71433283,71435058	0.900000
SK_MEL_5_nuclear_fraction	chr12	53467722	53467750	53467722	+	High_confidence	5	5	13	0.958031	3.238901	chr12	53467721	53467786	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	1.000000
SK_MEL_5_nuclear_fraction	chr17	59839247	59839351	59839258	+	RAMPAGE_only	5	5	46	3.389954	4.388536	chr17	59838987	59839290	SINE|Alu|AluSq2	-	chr17	59837950	59840315	VMP1|ENST00000587470.1	+	59837950,59839767	59838397,59840315	0.608696
SK_MEL_5_nuclear_fraction	chr12	121950257	121950292	121950257	+	RAMPAGE_only	2	2	8	0.589557	2.521641	chr12	121949929	121950482	LINE|L1|L1MB5	+	chr12	121952694	121959739	WDR66|ENST00000535257.1	+	121952694,121957073,121958271,121958942	121954334,121957268,121958522,121959739	0.500000
SK_MEL_5_nuclear_fraction	chr3	186786978	186786996	186786978	+	High_confidence	2	3	6	0.442168	2.584963	chr3	186786926	186787056	SINE|Alu|AluJb	-	chr3	186786639	186788507	EIF4A2|ENST00000497177.1	+	186786639,186787126,186787802	186786645,186787264,186788507	0.666667
SK_MEL_5_nuclear_fraction	chr11	65431691	65431713	65431691	+	RAMPAGE_only	9	9	30	2.210840	4.651084	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.966667
SK_MEL_5_nuclear_fraction	chr1	91345801	91345818	91345801	-	RAMPAGE_only	6	6	22	1.621282	3.236857	chr1	91345659	91346137	LTR|ERV1|MER39	+	chr1	91262185	91347449	HFM1|ENST00000430465.1	-	91262185,91262480,91266016,91267744,91273711,91274729,91276627,91276981,91313348,91313956,91315814,91316100,91316390,91319292,91322949,91323092,91324674,91343429,91347428	91262392,91262592,91266107,91267855,91273815,91274809,91276743,91277062,91313495,91314060,91315972,91316184,91316476,91319390,91322997,91323199,91324766,91343510,91347449	0.636364
SK_MEL_5_nuclear_fraction	chr9	120440427	120440470	120440427	-	RAMPAGE_only	4	4	13	0.958031	3.026987	chr9	120440377	120440583	LINE|L2|L2c	+	chr9	120389195	120536437	MSTRG.59589.5	-	120389195,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120447894,120453455,120458449,120460571,120467859,120470110,120471747,120475205,120487293,120491306,120518426,120524985,120527805,120528743,120529977,120536371	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120443742,120448126,120453873,120458622,120460667,120467997,120470220,120475106,120477450,120487437,120491477,120518645,120525078,120527925,120528797,120530140,120536437	1.000000
SK_MEL_5_nuclear_fraction	chr1	205891235	205891270	205891269	+	RAMPAGE_only	2	2	7	0.515863	2.521641	chr1	205891197	205893986	LTR|ERVK|HERVK9-int	+	chr1	205890019	205896087	LOC284581|NR_046098.1	+	205890019,205891155,205894466	205890486,205891309,205896087	0.857143
SK_MEL_5_nuclear_fraction	chr7	30562905	30562906	30562905	+	High_confidence	5	7	7	0.515863	2.807355	chr7	30562659	30563014	LTR|ERVL-MaLR|THE1D	-	chr7	30563004	30583325	MSTRG.52480.1	+	30563004,30577722	30568701,30583325	1.000000
SK_MEL_5_nuclear_fraction	chr4	28402888	28402951	28402950	-	High_confidence	22	22	125	9.211832	5.944048	chr4	28402359	28403146	LTR|ERV1|LTR1A2	-	chr4	28362278	28402701	AC109588.1|ENST00000507759.5	-	28362278,28370699,28393203,28394195,28402651	28362592,28370809,28393350,28394300,28402701	0.568000
SK_MEL_5_nuclear_fraction	chr4_GL000008v2_random	170343	170379	170367	-	RAMPAGE_only	199	215	832	61.313954	6.743898	chr4_GL000008v2_random	170280	170685	LTR|ERV1|MER61C	+	chr4_GL000008v2_random	161986	178171	ANKRD20A12P|NR_046228.1	-	161986,163784,164602,175824,177526	162439,163998,164884,175974,178171	0.789663
SK_MEL_5_nuclear_fraction	chr18	77127741	77127807	77127741	-	High_confidence	4	7	30	2.210840	4.323231	chr18	77125932	77128521	LINE|L1|L1MD2	+	chr18	77066311	77127712	MBP|ENST00000583798.1	-	77066311,77105210,77127289	77066385,77105286,77127712	0.700000
SK_MEL_5_nuclear_fraction	chr2	29223817	29223821	29223820	-	High_confidence	4	4	9	0.663252	2.641604	chr2	29223782	29224196	LTR|ERVL|LTR16B2	-	chr2	29192773	29223900	ALK|ENST00000642122.1	-	29192773,29196769,29197541,29207170,29209785,29213983,29220705,29222343,29222516,29223341	29193922,29196860,29197676,29207272,29209878,29214081,29220835,29222408,29222607,29223900	1.000000
SK_MEL_5_nuclear_fraction	chr7	119702320	119702757	119702474	-	RAMPAGE_only	13	14	476	35.078656	4.840794	chr7	119702301	119702509	LTR|ERVL-MaLR|MLT1A0	-	chr7	119698873	119713774	MSTRG.54298.6	-	119698873,119713665	119704972,119713774	0.997899
SK_MEL_5_nuclear_fraction	chr1	202551726	202551760	202551739	+	RAMPAGE_only	17	17	77	5.674488	5.743869	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.532468
SK_MEL_5_nuclear_fraction	chr7	104753587	104753605	104753587	-	RAMPAGE_only	4	4	16	1.179114	3.906891	chr7	104753516	104754396	LINE|L1|L1ME5	+	chr7	104738597	104804084	MSTRG.53976.2	-	104738597,104744049,104752714,104761473,104785219,104798336,104802838,104803955	104738955,104744180,104759822,104761580,104786581,104800069,104802963,104804084	0.875000
SK_MEL_5_nuclear_fraction	chr5	151772645	151772658	151772645	+	High_confidence	3	3	8	0.589557	3.000000	chr5	151772569	151772792	SINE|MIR|MIRb	-	chr5	151772503	151797369	G3BP1|ENST00000522666.1	+	151772503,151786602,151790888,151794158,151795478,151797226	151772668,151786715,151791062,151794249,151795575,151797369	0.500000
SK_MEL_5_nuclear_fraction	chr1	236163593	236163669	236163668	+	RAMPAGE_only	39	40	80	5.895572	4.942171	chr1	236163473	236163830	LTR|ERVL-MaLR|THE1A	+	chr1	236168700	236208482	GPR137B|ENST00000454895.2	+	236168700,236178413,236179878,236183777,236205125,236208060	236168755,236178636,236180028,236183906,236205250,236208482	0.712500
SK_MEL_5_nuclear_fraction	chr1	149657957	149657974	149657973	+	RAMPAGE_only	12	12	24	1.768672	4.262692	chr1	149657882	149657989	SINE|MIR|MIRb	+	chr1	149655730	149669321	LINC00869|ENST00000643247.1	+	149655730,149658151,149660853,149665081,149665956,149669188	149655908,149658254,149661089,149665133,149666124,149669321	0.666667
SK_MEL_5_nuclear_fraction	chr7	102337245	102337263	102337262	+	High_confidence	3	4	12	0.884336	2.522055	chr7	102337158	102337268	SINE|Alu|AluYe5	-	chr7	102337315	102339115	AC091390.2|ENST00000432573.1	+	102337315,102337579,102338931	102337402,102337682,102339115	0.916667
SK_MEL_5_nuclear_fraction	chr17	59892716	59892746	59892716	-	High_confidence	30	31	134	9.875084	5.955390	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.761194
SK_MEL_5_nuclear_fraction	chr1	49257817	49257823	49257822	-	RAMPAGE_only	15	20	42	3.095176	4.562815	chr1	49257178	49257818	LINE|L1|L1PA3	-	chr1	48817506	50023900	AGBL4|ENST00000371836.1	-	48817506,48867190,49045583,49245769,49697312,49851395,50023762	48818222,48867230,49045800,49245864,49697437,49851518,50023900	0.571429
SK_MEL_5_nuclear_fraction	chr2	124407868	124407869	124407868	+	RAMPAGE_only	11	11	11	0.810641	2.845351	chr2	124407870	124413893	LINE|L1|L1PA2	+	chr2	124025286	124915377	CNTNAP5|NM_130773.3	+	124025286,124221704,124242199,124417442,124434483,124446752,124474738,124504291,124524302,124527284,124563216,124609800,124647757,124747228,124763671,124763976,124772798,124789901,124798095,124865305,124869674,124902881,124911466,124914091	124025732,124221809,124242393,124417590,124434687,124446937,124474879,124504556,124524452,124527456,124563323,124609920,124647958,124747385,124763799,124764147,124773017,124790141,124798320,124865436,124869762,124903100,124911538,124915377	0.909091
SK_MEL_5_nuclear_fraction	chr7	113743277	113743317	113743277	-	High_confidence	11	11	117	8.622275	5.820440	chr7	113742900	113748900	LINE|L1|L1PA2	+	chr7	113644556	113743328	MSTRG.54215.1	-	113644556,113722555,113742711	113644612,113722661,113743328	0.777778
SK_MEL_5_nuclear_fraction	chr3	62950383	62950430	62950429	+	High_confidence	374	409	605	44.585267	7.692735	chr3	62950233	62950594	LTR|ERVL-MaLR|THE1B	+	chr3	62950470	63125062	MSTRG.39811.4	+	62950470,62952006,62985035,62989133,63008791,63085283,63102691,63106302,63113576,63118698,63122255,63124082	62950518,62952083,62985144,62989265,63008921,63086401,63102833,63106422,63113766,63118942,63123448,63125062	0.694215
SK_MEL_5_nuclear_fraction	chrX	138990575	138990641	138990597	-	High_confidence	210	259	493	36.331465	6.205702	chrX	138990423	138990790	LTR|ERVL-MaLR|THE1B	-	chrX	138635485	138990567	FGF13|ENST00000455663.5	-	138635485,138702983,138708817,138857511,138985017,138990507	138635655,138703087,138708928,138857679,138985091,138990567	0.547667
SK_MEL_5_nuclear_fraction	chr16	4355592	4355593	4355592	-	High_confidence	44	44	44	3.242565	4.362507	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.863636
SK_MEL_5_nuclear_fraction	chr18	3857557	3857651	3857645	-	RAMPAGE_only	106	112	369	27.193328	7.176400	chr18	3857472	3857863	LINE|L2|L2c	+	chr18	3496031	3845359	DLGAP1|ENST00000400147.6	-	3496031,3502492,3508569,3534193,3567489,3581874,3729134,3742334,3814058,3845231	3499394,3502645,3508661,3534615,3567581,3582248,3729375,3742512,3814273,3845359	0.509485
SK_MEL_5_nuclear_fraction	chr18	14827399	14827527	14827481	+	RAMPAGE_only	29	32	195	14.370458	6.711152	chr18	14827405	14827653	LTR|ERVL|MER21B	+	chr18	14837148	14852738	ANKRD30B|ENST00000320584.8	+	14837148,14837614,14840587,14842896,14843023,14848715,14850213,14851508	14837289,14837676,14840678,14842925,14843096,14848929,14850382,14852738	0.605128
SK_MEL_5_nuclear_fraction	chrX	16712869	16712907	16712869	-	High_confidence	3	3	10	0.736947	3.169925	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.900000
SK_MEL_5_nuclear_fraction	chr11	38337190	38337217	38337203	-	High_confidence	57	60	368	27.119633	6.371934	chr11	38337000	38337314	SINE|Alu|AluY	+	chr11	38325197	38337213	MSTRG.9088.1	-	38325197,38336836	38325269,38337213	0.747283
SK_MEL_5_nuclear_fraction	chrX	98573830	98573850	98573833	+	High_confidence	41	51	199	14.665236	5.537098	chrX	98573437	98574092	LTR|ERV1|LTR49	+	chrX	98573809	98645226	AL157778.1|ENST00000650384.1	+	98573809,98644527	98573932,98645226	0.673367
SK_MEL_5_nuclear_fraction	chr11	90860485	90860570	90860569	+	RAMPAGE_only	3	3	24	1.768672	4.334963	chr11	90860508	90860911	LINE|L1|L1PREC2	+	chr11	90626627	90874120	MSTRG.10407.7	+	90626627,90844879,90852615,90854969	90629324,90844957,90852707,90874120	1.000000
SK_MEL_5_nuclear_fraction	chr6	114998110	114998158	114998133	+	High_confidence	10	12	43	3.168870	4.545467	chr6	114998054	114998374	LTR|ERV1|LTR12F	+	chr6	114998150	115000177	MSTRG.50671.2	+	114998150,114999715	114998419,115000177	0.534884
SK_MEL_5_nuclear_fraction	chr9	28921980	28922007	28922006	-	High_confidence	64	72	128	9.432916	5.997172	chr9	28921703	28922191	LTR|ERVL|LTR33	+	chr9	28921412	28921976	MSTRG.58142.1	-	28921412,28921933	28921811,28921976	0.546875
SK_MEL_5_nuclear_fraction	chr7	119599799	119599807	119599799	-	RAMPAGE_only	2	2	7	0.515863	2.584963	chr7	119598168	119600389	LINE|L1|L1PA8	-	chr7	119597971	119605867	MSTRG.54301.1	-	119597971	119605867	0.714286
SK_MEL_5_nuclear_fraction	chr7	91311286	91311304	91311303	+	High_confidence	4	5	15	1.105420	3.378783	chr7	91311058	91311602	LTR|ERVL-MaLR|MLT1D	+	chr7	91311367	91335741	AC079760.2|ENST00000449361.5	+	91311367,91312439,91315972,91320801,91333853,91335554	91311386,91312562,91316030,91320987,91333961,91335741	0.533333
SK_MEL_5_nuclear_fraction	chr19	45424375	45424396	45424384	-	High_confidence	9	11	27	1.989756	4.060262	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	1.000000
SK_MEL_5_nuclear_fraction	chr3	169812887	169812904	169812903	-	High_confidence	15	15	23	1.694977	3.386631	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.913043
SK_MEL_5_nuclear_fraction	chr2	237546341	237546351	237546341	+	High_confidence	3	3	9	0.663252	2.725481	chr2	237545882	237546379	LTR|ERV1|MER4A	-	chr2	237546404	237553843	MLPH|ENST00000477457.1	+	237546404,237549220,237552336,237553565	237546683,237549278,237552437,237553843	1.000000
SK_MEL_5_nuclear_fraction	chr2	233775648	233775649	233775648	+	High_confidence	9	9	11	0.810641	2.913977	chr2	233775484	233775739	LTR|ERVL-MaLR|MLT1O	-	chr2	233775678	233833423	MROH2A|NM_001287395.1	+	233775678,233779344,233779670,233789496,233789851,233792795,233793672,233794362,233795617,233795966,233796199,233798773,233799779,233800204,233802167,233803447,233804050,233804494,233805003,233807422,233807732,233809125,233810793,233811879,233813669,233814581,233816780,233818001,233818651,233819316,233819901,233822123,233822362,233822880,233823555,233828629,233828889,233829619,233831408,233832176,233832578,233833137	233775757,233779452,233779852,233789628,233790014,233792894,233793824,233794480,233795745,233796045,233796313,233798850,233799899,233800315,233802315,233803488,233804192,233804547,233805111,233807542,233807855,233809278,233810916,233811959,233813778,233814677,233816885,233818125,233818770,233819469,233820056,233822283,233822571,233823018,233823682,233828779,233829072,233829775,233831540,233832279,233832644,233833423	0.818182
SK_MEL_5_nuclear_fraction	chr7	95674064	95674068	95674064	-	RAMPAGE_only	3	3	8	0.589557	2.521641	chr7	95672276	95674161	LINE|L1|L1MEd	+	chr7	95651858	95676691	MSTRG.53634.1	-	95651858	95676691	0.875000
SK_MEL_5_nuclear_fraction	chr3	134494761	134494787	134494765	+	High_confidence	19	19	68	5.011237	5.306295	chr3	134494583	134494832	LINE|L2|L2c	-	chr3	134495293	134565028	CEP63|ENST00000337090.7	+	134495293,134507108,134531844,134532777,134537154,134545585,134546148,134547334,134549061,134550062,134551925,134558141,134559149,134561376	134495364,134507286,134531940,134532900,134537268,134545819,134546288,134547472,134549176,134550260,134552012,134558347,134559429,134565028	0.705882
SK_MEL_5_nuclear_fraction	chr11	16252553	16252590	16252573	-	RAMPAGE_only	25	25	118	8.695969	6.026555	chr11	16252183	16253065	LINE|L1|L1MC1	+	chr11	15966448	16341269	SOX6|ENST00000316399.10	-	15966448,15986203,15988996,16014941,16046513,16049754,16055751,16095995,16097608,16111802,16183885,16186782,16234581,16318445,16341011	15973112,15986420,15989170,16015050,16046701,16049938,16055901,16096118,16097688,16111923,16183954,16186955,16234671,16318653,16341269	0.728814
SK_MEL_5_nuclear_fraction	chr4	133577343	133577403	133577343	+	High_confidence	287	335	696	51.291480	5.844001	chr4	133577162	133577522	LTR|ERVL-MaLR|THE1B	+	chr4	133577278	133584429	MSTRG.44313.1	+	133577278,133582422	133582190,133584429	0.984195
SK_MEL_5_nuclear_fraction	chr5	27478071	27478159	27478158	+	RAMPAGE_only	18	18	102	7.516855	5.503305	chr5	27477973	27478390	LINE|L1|L1MEf	+	chr5	27472291	27496280	MSTRG.45475.1	+	27472291,27475534	27472519,27496280	0.970588
SK_MEL_5_nuclear_fraction	chr20	25289602	25289617	25289616	+	High_confidence	9	9	15	1.105420	2.638460	chr20	25289363	25289673	SINE|Alu|AluJb	+	chr20	25289847	25296468	PYGB|ENST00000428458.1	+	25289847,25290480,25292405,25294157,25295603,25296369	25289930,25290622,25292613,25294292,25295670,25296468	0.866667
SK_MEL_5_nuclear_fraction	chr11	90858182	90858201	90858182	+	RAMPAGE_only	2	2	8	0.589557	2.521641	chr11	90857929	90860501	LINE|L1|L1PA5	+	chr11	90626627	90874120	MSTRG.10407.7	+	90626627,90844879,90852615,90854969	90629324,90844957,90852707,90874120	0.875000
SK_MEL_5_nuclear_fraction	chr3	18693816	18693911	18693897	+	RAMPAGE_only	11	13	66	4.863847	5.309101	chr3	18692573	18694307	LINE|L1|L1PA3	-	chr3	18465982	18764059	SATB1-AS1|ENST00000595388.5	+	18465982,18526386,18527173,18745953,18763752	18466039,18526540,18527326,18746070,18764059	0.560606
SK_MEL_5_nuclear_fraction	chr1	25244018	25244287	25244078	-	High_confidence	54	55	326	24.024458	4.276554	chr1	25244059	25244116	SINE|Alu|Alu	-	chr1	25242248	25244105	RSRP1|ENST00000569495.5	-	25242248,25242538,25243549	25242426,25242705,25244105	0.990798
SK_MEL_5_nuclear_fraction	chr12	110172466	110172512	110172511	+	High_confidence	6	6	20	1.473893	3.984184	chr12	110172360	110173979	Retroposon|SVA|SVA_D	+	chr12	110171894	110218560	MSTRG.13751.8	+	110171894,110172579,110180421,110190919,110192616,110203863,110205442,110205594,110209170,110218043	110172086,110173031,110180571,110191048,110192706,110203950,110205514,110205680,110209216,110218560	0.950000
SK_MEL_5_nuclear_fraction	chr12	9570635	9570655	9570650	+	RAMPAGE_only	9	11	32	2.358229	4.231402	chr12	9570334	9570702	LINE|L1|L1MDa	+	chr12	9558385	9576294	MSTRG.11559.12	+	9558385,9559174,9560109,9560816,9564159,9565091,9567489,9569057,9570765,9571460,9573002,9573465,9574846,9575642,9576117	9558452,9559348,9560191,9562976,9564325,9565303,9567567,9569202,9570892,9571573,9573093,9573534,9574949,9575717,9576294	0.812500
SK_MEL_5_nuclear_fraction	chr5	85663581	85663603	85663593	+	High_confidence	4	4	15	1.105420	3.640224	chr5	85657593	85663641	LINE|L1|L1PA2	-	chr5	85663231	85664684	AC010595.1|ENST00000507387.1	+	85663231	85664684	0.600000
SK_MEL_5_nuclear_fraction	chr16	72627651	72627766	72627765	-	RAMPAGE_only	24	25	138	10.169862	6.080941	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.724638
SK_MEL_5_nuclear_fraction	chr3	15049755	15049790	15049789	-	RAMPAGE_only	2	2	8	0.589557	2.750000	chr3	15049773	15049897	SINE|Alu|AluJb	-	chr3	15049211	15065260	MRPS25|ENST00000449354.6	-	15049211,15053379,15059368,15065060	15049935,15053467,15059475,15065260	0.500000
SK_MEL_5_nuclear_fraction	chr4	128428045	128428084	128428045	+	High_confidence	3	3	12	0.884336	3.584963	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428069	128519394	AC108062.1|ENST00000511497.5	+	128428069,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519394	0.583333
SK_MEL_5_nuclear_fraction	chr11	85717801	85717816	85717815	-	RAMPAGE_only	2	3	9	0.663252	3.000000	chr11	85717779	85717976	SINE|MIR|MIRc	+	chr11	85696182	85719075	MSTRG.10331.24	-	85696182,85697978,85700514,85704857,85707428,85709330,85714412,85716280	85696388,85698078,85700593,85705028,85707531,85709500,85714507,85719075	0.888889
SK_MEL_5_nuclear_fraction	chr18	7946878	7946898	7946878	+	High_confidence	226	226	526	38.763389	6.191278	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8143778	MSTRG.26206.7	+	7946869,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8143646	7946977,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8143778	0.960076
SK_MEL_5_nuclear_fraction	chr8	47997432	47997461	47997447	+	RAMPAGE_only	3	4	13	0.958031	3.392747	chr8	47995253	47998768	LTR|ERV1|HERVFH21-int	-	chr8	48008399	48064708	UBE2V2|ENST00000523111.6	+	48008399,48043032,48049852,48060681	48008470,48043181,48049978,48064708	0.615385
SK_MEL_5_nuclear_fraction	chr7	112452385	112452425	112452415	+	High_confidence	14	20	62	4.569069	4.832480	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112468104	MSTRG.54171.16	+	112452057,112455762,112456001,112456913,112458860,112462000,112462269	112452511,112455867,112456086,112457038,112461916,112462179,112468104	0.822581
SK_MEL_5_nuclear_fraction	chr7	99358654	99358658	99358654	+	High_confidence	3	5	8	0.589557	2.807355	chr7	99358536	99358830	SINE|Alu|AluSp	-	chr7	99358665	99366214	ARPC1A|ENST00000463009.1	+	99358665,99359544,99363542,99365890	99358775,99359738,99363633,99366214	0.750000
SK_MEL_5_nuclear_fraction	chr12	9399022	9399230	9399216	-	RAMPAGE_only	72	89	302	22.255786	6.152625	chr12	9398769	9399468	LINE|L1|L1MA9	+	chr12	9397039	9407536	MSTRG.11558.2	-	9397039,9401746,9402426,9406307	9400326,9401859,9402556,9407536	0.993377
SK_MEL_5_nuclear_fraction	chr14	45131152	45131165	45131152	-	RAMPAGE_only	3	3	7	0.515863	2.521641	chr14	45131034	45131136	DNA|hAT-Charlie|Charlie17a	-	chr14	45115875	45134508	MSTRG.16633.4	-	45115875,45118027,45120886,45121484,45129793,45130698,45133249	45116252,45118125,45120954,45121620,45129901,45131413,45134508	0.857143
SK_MEL_5_nuclear_fraction	chr21	8850024	8850073	8850024	+	RAMPAGE_only	30	39	136	10.022473	5.974635	chr21	8850073	8850241	SINE|MIR|MIRb	+	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	0.683824
SK_MEL_5_nuclear_fraction	chr7	2242922	2242923	2242922	+	High_confidence	11	11	11	0.810641	3.277613	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.909091
SK_MEL_5_nuclear_fraction	chr2	108607144	108607147	108607146	+	High_confidence	34	40	52	3.832122	4.397532	chr2	108606979	108607192	LTR|ERVL-MaLR|MLT1A0	+	chr2	108607160	108684448	LIMS1|ENST00000410093.5	+	108607160,108659604,108670780,108672324,108672879,108675877,108676605,108677978,108680694,108683884	108607255,108659764,108670847,108672445,108673029,108676028,108676698,108678027,108680770,108684448	0.576923
SK_MEL_5_nuclear_fraction	chr2	101351334	101351341	101351334	-	RAMPAGE_only	2	3	7	0.515863	2.521641	chr2	101351266	101351496	SINE|MIR|MIR	+	chr2	101348353	101387503	CREG2|NM_153836.3	-	101348353,101355252,101383532,101387016	101351070,101355366,101383702,101387503	0.857143
SK_MEL_5_nuclear_fraction	chr5	95509593	95509627	95509593	-	RAMPAGE_only	3	3	8	0.589557	2.500000	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95502902	95516674	TTC37|ENST00000508181.5	-	95502902,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524	95503003,95503938,95506992,95509687,95512618,95513645,95514923,95516409,95516674	0.500000
SK_MEL_5_nuclear_fraction	chr1	212792425	212792449	212792448	-	High_confidence	4	4	18	1.326504	3.794653	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.500000
SK_MEL_5_nuclear_fraction	chr8	89607273	89607309	89607308	-	RAMPAGE_only	5	8	21	1.547588	3.594466	chr8	89607188	89607770	LTR|ERVL|LTR67B	+	chr8	89584950	89611889	MSTRG.56772.4	-	89584950,89596418,89596933,89611433	89588050,89596512,89609494,89611889	1.000000
SK_MEL_5_nuclear_fraction	chr1	28506356	28506413	28506393	+	High_confidence	3	3	23	1.694977	3.970573	chr1	28506187	28506484	SINE|Alu|AluSx	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.739130
SK_MEL_5_nuclear_fraction	chr14	83368463	83368477	83368476	-	High_confidence	5	5	12	0.884336	2.845351	chr14	83368378	83368504	LTR|ERVL-MaLR|MLT1J	-	chr14	83367689	83367973	MSTRG.17606.1	-	83367689	83367973	0.666667
SK_MEL_5_nuclear_fraction	chr5	111338536	111338537	111338536	+	RAMPAGE_only	6	6	6	0.442168	2.584963	chr5	111338402	111339049	LINE|L1|L1P4	-	chr5	111357960	111473324	CAMK4|ENST00000502916.5	+	111357960,111374849,111376859,111394709,111446685,111449128,111473310	111358124,111374912,111376942,111394782,111446776,111449203,111473324	0.500000
SK_MEL_5_nuclear_fraction	chr7	104771009	104771015	104771009	-	RAMPAGE_only	2	2	8	0.589557	3.000000	chr7	104770900	104771036	LINE|L2|L2a	+	chr7	104768668	104804084	MSTRG.53976.7	-	104768668,104785219,104785730,104802838,104803955	104779346,104785378,104800069,104802963,104804084	1.000000
SK_MEL_5_nuclear_fraction	chr3	190644037	190644055	190644037	+	RAMPAGE_only	1	1	8	0.589557	2.807355	chr3	190644032	190644083	LINE|L2|L2c	-	chr3	190563940	190651518	IL1RAP|ENST00000412504.6	+	190563940,190604127,190608994,190620274,190623343,190627322,190629349,190644247,190645698,190648337	190564353,190604413,190609181,190620440,190623415,190627449,190629498,190644397,190645842,190651518	0.500000
SK_MEL_5_nuclear_fraction	chr8	83405620	83405691	83405644	+	RAMPAGE_only	4	5	33	2.431924	3.862301	chr8	83404494	83405695	LTR|ERV1|LTR37-int	+	chr8	83403757	83452973	MSTRG.56635.3	+	83403757,83447126	83416196,83452973	0.969697
SK_MEL_5_nuclear_fraction	chr2	151704888	151704889	151704888	-	RAMPAGE_only	12	14	15	1.105420	3.521641	chr2	151698868	151704889	LINE|L1|L1PA2	-	chr2	151689197	151706931	NEB|ENST00000489048.1	-	151689197,151691863,151692058,151692260,151694322,151694521,151695577,151696636,151697147,151697349,151697543,151706880	151690825,151691968,151692166,151692362,151694436,151694629,151695682,151696735,151697252,151697457,151697648,151706931	0.600000
SK_MEL_5_nuclear_fraction	chr12	40516630	40516640	40516639	+	RAMPAGE_only	4	4	10	0.736947	2.947703	chr12	40516579	40516645	LINE|L1|X9_LINE	-	chr12	40508011	40548626	MSTRG.12179.16	+	40508011,40509033,40509218,40509958,40510168,40510796,40510970,40512167,40513528,40513730,40514389,40514974,40515173,40515441,40516100,40516413,40516613,40517181,40517852,40518805,40519002,40519918,40520426,40520723,40520914,40521473,40521624,40522642,40523391,40523588,40524515,40525071,40525382,40525567,40526272,40527095,40527290,40527754,40528056,40528256,40529176,40530272,40530457,40531056,40531208,40532028,40532228,40533024,40533232,40534155,40534710,40535012,40535203,40535764,40535905,40536439,40536922,40537395,40537661,40537853,40538793,40539528,40541618,40541814,40542273,40542561,40542764,40543788,40544351,40544638,40544829,40545049,40545335,40545955,40546395,40546602,40547134,40547476,40547771,40548577	40508068,40509087,40509272,40510012,40510222,40510850,40511024,40512221,40513582,40513784,40514443,40515028,40515218,40515495,40516145,40516467,40516667,40517235,40518543,40518859,40519056,40519972,40520456,40520777,40520968,40521527,40521679,40522696,40523445,40523642,40524569,40525107,40525430,40525621,40526326,40527149,40527344,40527787,40528110,40528307,40529230,40530320,40530511,40531110,40531262,40532082,40532282,40533078,40533283,40534209,40534743,40535066,40535257,40535809,40535959,40536484,40536976,40537428,40537715,40537907,40538847,40539561,40541672,40541868,40542306,40542615,40542818,40543842,40544384,40544692,40544883,40545097,40545398,40546003,40546449,40546656,40547182,40547622,40547825,40548626	0.900000
SK_MEL_5_nuclear_fraction	chr1	40067240	40067256	40067240	+	High_confidence	6	9	15	1.105420	3.182006	chr1	40067175	40067278	LINE|L2|L2	-	chr1	40067269	40071581	CAP1|ENST00000479759.5	+	40067269,40067539,40069689,40070158,40070429,40070835,40071449	40067311,40067717,40069874,40070282,40070512,40070979,40071581	0.866667
SK_MEL_5_nuclear_fraction	chr12	19447694	19447716	19447715	+	RAMPAGE_only	15	15	26	1.916061	4.334963	chr12	19447707	19447850	SINE|MIR|MIRc	+	chr12	19440580	19520223	AEBP2|ENST00000360995.8	+	19440580,19462509,19473247,19493799,19500096,19512397,19514670,19518086,19518674	19440727,19462717,19473355,19493986,19500221,19512465,19514784,19518113,19520223	0.615385
SK_MEL_5_nuclear_fraction	chr7	30562883	30562916	30562915	-	RAMPAGE_only	6	6	18	1.326504	4.058814	chr7	30562659	30563014	LTR|ERVL-MaLR|THE1D	-	chr7	30548356	30564617	GARS-DT|ENST00000355837.4	-	30548356,30563722	30562128,30564617	0.500000
SK_MEL_5_nuclear_fraction	chr19	3062977	3062983	3062982	-	High_confidence	4	6	9	0.663252	3.000000	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.777778
SK_MEL_5_nuclear_fraction	chr7	30563293	30563329	30563328	+	High_confidence	3	3	8	0.589557	2.750000	chr7	30563019	30563431	LINE|CR1|L3	+	chr7	30563004	30583325	MSTRG.52480.1	+	30563004,30577722	30568701,30583325	0.875000
SK_MEL_5_nuclear_fraction	chr20	25199652	25199681	25199680	+	RAMPAGE_only	4	4	20	1.473893	3.446439	chr20	25199486	25200499	LINE|L1|L1MB3	-	chr20	25195942	25226729	MSTRG.35177.15	+	25195942,25207075,25209848,25213262,25214866,25215675,25216647,25217501,25218549,25221231,25222837,25224100,25225161,25225498	25196254,25207397,25209925,25213406,25214942,25215711,25216736,25217581,25218614,25221333,25222978,25224157,25225317,25226729	0.950000
SK_MEL_5_nuclear_fraction	chr7	104772426	104772557	104772426	-	RAMPAGE_only	2	3	29	2.137145	4.208966	chr7	104772194	104772396	SINE|MIR|MIR3	-	chr7	104768668	104804084	MSTRG.53976.7	-	104768668,104785219,104785730,104802838,104803955	104779346,104785378,104800069,104802963,104804084	0.965517
SK_MEL_5_nuclear_fraction	chr13	60410080	60410081	60410080	+	High_confidence	399	423	527	38.837084	7.374613	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60409970	60573871	MSTRG.15219.7	+	60409970,60439687,60444682,60460379,60467237,60468350,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573612	60410164,60439772,60444748,60460540,60467379,60468403,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573871	0.749526
SK_MEL_5_nuclear_fraction	chr11	65430368	65430635	65430578	+	RAMPAGE_only	20	21	298	21.961007	5.788325	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.993289
SK_MEL_5_nuclear_fraction	chr1	63547806	63547856	63547836	+	High_confidence	7	7	29	2.137145	4.110577	chr1	63547557	63548048	LTR|ERVL-MaLR|MLT1H	-	chr1	63548008	63571128	EFCAB7|ENST00000460678.6	+	63548008,63551047,63551724,63557112,63561708,63568309,63571020	63548350,63551090,63551834,63557247,63561857,63568519,63571128	0.862069
SK_MEL_5_nuclear_fraction	chr15	42385704	42385727	42385704	+	RAMPAGE_only	5	7	18	1.326504	3.725481	chr15	42385567	42385719	DNA|hAT-Tip100|MamTip3	-	chr15	42374207	42411926	CAPN3|ENST00000638141.1	+	42374207,42384482,42386166,42387752,42388927,42392638,42394255,42396799,42399491,42401640,42402123,42402793,42403740,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42374531,42384552,42386285,42387886,42389096,42392722,42394341,42396877,42399652,42401810,42402135,42403002,42403777,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42411926	0.888889
SK_MEL_5_nuclear_fraction	chr3	193614810	193614818	193614810	+	High_confidence	2	3	8	0.589557	2.521641	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.500000
SK_MEL_5_nuclear_fraction	chr5	31538028	31538164	31538163	+	High_confidence	54	54	140	10.317252	5.692053	chr5	31537737	31538167	LTR|ERVL-MaLR|MLT1J	-	chr5	31538172	31545714	C5orf22|ENST00000510530.1	+	31538172,31540948,31541280,31545645	31538689,31541011,31541402,31545714	0.821429
SK_MEL_5_nuclear_fraction	chr11	102555269	102555285	102555278	-	High_confidence	8	12	28	2.063450	4.286790	chr11	102554936	102555606	LTR|ERV1|LTR48	+	chr11	102553675	102555119	MSTRG.10576.1	-	102553675,102554711	102553965,102555119	0.678571
SK_MEL_5_nuclear_fraction	chr9	115744264	115744269	115744264	-	RAMPAGE_only	6	6	12	0.884336	3.277613	chr9	115743858	115744555	LTR|ERV1|MER50B	-	chr9	115739338	115741498	AL691420.1|ENST00000646159.1	-	115739338,115741127,115741461	115739874,115741291,115741498	0.500000
SK_MEL_5_nuclear_fraction	chr12	26914560	26914572	26914571	-	RAMPAGE_only	5	6	11	0.810641	3.321928	chr12	26914520	26914587	LINE|RTE-BovB|MamRTE1	+	chr12	26905180	26917734	INTS13|ENST00000538155.5	-	26905180,26906301,26911177,26913456,26913973,26916001,26917351,26917643	26905536,26906437,26911317,26913687,26914128,26916180,26917441,26917734	0.909091
SK_MEL_5_nuclear_fraction	chr2	159428356	159428411	159428356	-	RAMPAGE_only	4	4	16	1.179114	3.750000	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.625000
SK_MEL_5_nuclear_fraction	chr16	21612294	21612344	21612305	+	High_confidence	11	11	66	4.863847	4.892002	chr16	21612297	21612508	SINE|MIR|MIRc	+	chr16	21612099	21625115	METTL9|ENST00000562961.1	+	21612099,21612644,21617864,21624930	21612298,21612835,21618074,21625115	0.878788
SK_MEL_5_nuclear_fraction	chr1	6198001	6198103	6198032	-	RAMPAGE_only	6	8	41	3.021481	3.099113	chr1	6197986	6198124	LINE|CR1|X7A_LINE	-	chr1	6186574	6199563	RPL22|ENST00000480661.1	-	6186574,6192929,6197651	6186816,6193054,6199563	0.975610
SK_MEL_5_nuclear_fraction	chr13	91877983	91877984	91877983	+	RAMPAGE_only	24	29	30	2.210840	4.211261	chr13	91877788	91878144	LTR|ERVL-MaLR|THE1A	+	chr13	91398618	92867237	GPC5|NM_004466.5	+	91398618,91448760,91693186,91728531,91756294,91907936,92144829,92866281	91399209,91448922,91693881,91728665,91756420,91908057,92144989,92867237	0.600000
SK_MEL_5_nuclear_fraction	chr5	33962388	33962439	33962416	-	RAMPAGE_only	4	4	17	1.252809	3.625000	chr5	33962363	33962437	SINE|MIR|MIRc	-	chr5	33945865	33979206	MSTRG.45595.7	-	33945865,33951553,33954360,33973872	33947374,33951677,33973832,33979206	0.941176
SK_MEL_5_nuclear_fraction	chr5	27478268	27478392	27478309	+	RAMPAGE_only	5	5	47	3.463649	4.476482	chr5	27477973	27478390	LINE|L1|L1MEf	+	chr5	27472291	27496280	MSTRG.45475.1	+	27472291,27475534	27472519,27496280	1.000000
SK_MEL_5_nuclear_fraction	chr3	139344535	139344548	139344547	+	High_confidence	254	257	531	39.131862	6.231393	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.775895
SK_MEL_5_nuclear_fraction	chr8	83405756	83405841	83405773	+	RAMPAGE_only	3	3	31	2.284534	3.692280	chr8	83405788	83405876	LTR|ERV1|LTR37-int	+	chr8	83403757	83452973	MSTRG.56635.3	+	83403757,83447126	83416196,83452973	1.000000
SK_MEL_5_nuclear_fraction	chr13	83108095	83108115	83108095	+	High_confidence	10	11	27	1.989756	4.254525	chr13	83107901	83108254	LTR|ERVL-MaLR|THE1A	+	chr13	83108406	83108689	MSTRG.15486.1	+	83108406	83108689	0.555556
SK_MEL_5_nuclear_fraction	chr9	120543267	120543293	120543267	-	RAMPAGE_only	7	8	19	1.400198	3.892407	chr9	120543133	120543401	LINE|L2|L2a	+	chr9	120439789	120539120	MSTRG.59589.18	-	120439789,120443619,120447894,120458449,120460571,120467859,120470110,120471747,120475031,120475205,120475663,120487293,120491306,120518426,120524985,120527805,120528743,120529977,120536371,120539040	120439972,120443742,120448126,120458622,120460667,120467997,120470220,120471878,120475106,120475281,120477450,120487437,120491477,120518645,120525078,120527925,120528797,120530140,120536526,120539120	0.947368
SK_MEL_5_nuclear_fraction	chr13	54572234	54572235	54572234	+	High_confidence	343	369	489	36.036687	5.551479	chr13	54572234	54573121	LINE|L1|L1HS	+	chr13	54572239	54582888	MSTRG.15123.1	+	54572239,54581570	54572331,54582888	0.928425
SK_MEL_5_nuclear_fraction	chr7	119712927	119712955	119712954	-	High_confidence	4	4	16	1.179114	3.323231	chr7	119712006	119713581	LTR|ERVL-MaLR|THE1B-int	-	chr7	119711868	119712844	MSTRG.54304.1	-	119711868	119712844	0.812500
SK_MEL_5_nuclear_fraction	chr18	73264469	73264502	73264501	-	High_confidence	112	116	562	41.416397	6.631995	chr18	73264307	73264608	SINE|Alu|AluY	+	chr18	73154057	73264498	LOC400655|NR_034133.1	-	73154057,73159540,73161823,73200652,73255812,73264239	73155935,73159664,73161973,73200789,73255918,73264498	0.670819
SK_MEL_5_nuclear_fraction	chr13	32527397	32527422	32527421	-	RAMPAGE_only	4	4	14	1.031725	3.467720	chr13	32527156	32527383	SINE|MIR|MIRc	-	chr13	32517487	32536383	MSTRG.14577.31	-	32517487,32521372,32535768	32518003,32527532,32536383	1.000000
SK_MEL_5_nuclear_fraction	chr17	10291822	10291831	10291822	+	High_confidence	13	15	25	1.842366	4.136842	chr17	10291623	10291998	LTR|ERVL-MaLR|THE1B	+	chr17	10291819	10341878	MSTRG.23406.1	+	10291819,10317497,10320391,10341491	10291913,10318549,10320512,10341878	0.560000
SK_MEL_5_nuclear_fraction	chr4	58803477	58803478	58803477	-	RAMPAGE_only	49	49	57	4.200595	5.340184	chr4	58803319	58803671	LTR|ERVL-MaLR|THE1A	-	chr4	58780625	58984141	AC017091.1|ENST00000513551.1	-	58780625,58782544,58784035,58977013,58984005	58781126,58782642,58784261,58977113,58984141	0.631579
SK_MEL_5_nuclear_fraction	chr16	35522898	35522939	35522909	+	RAMPAGE_only	7	7	37	2.726702	3.871178	chr16	35517049	35524053	LTR|ERVK|HERVK3-int	+	chr16	35516817	35524422	MSTRG.21845.1	+	35516817,35522118	35517144,35524422	0.972973
SK_MEL_5_nuclear_fraction	chr4	189721481	189721482	189721481	-	RAMPAGE_only	7	8	9	0.663252	2.500000	chr4	189721455	189721683	DNA|hAT-Charlie|MER20	+	chr4	189703880	189722536	MSTRG.45041.1	-	189703880,189716234,189721205,189722401	189708489,189716368,189722279,189722536	0.666667
SK_MEL_5_nuclear_fraction	chr14	46885811	46885868	46885867	-	RAMPAGE_only	304	365	562	41.416397	5.134019	chr14	46885639	46886113	LTR|ERVL|LTR40a	-	chr14	46873333	46882222	MDGA2|ENST00000557516.1	-	46873333,46874044,46882043	46873591,46874200,46882222	0.862989
SK_MEL_5_nuclear_fraction	chr1	187641241	187641287	187641241	+	High_confidence	22	30	88	6.485130	5.842788	chr1	187641123	187641443	LTR|ERV1|MER61A	+	chr1	187641284	187686622	ERVMER61-1|ENST00000643044.1	+	187641284,187641617,187685703	187641481,187641814,187686622	0.590909
SK_MEL_5_nuclear_fraction	chr1	147173255	147173261	147173260	+	High_confidence	3	3	8	0.589557	2.521641	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.500000
SK_MEL_5_nuclear_fraction	chr3	197953630	197953679	197953630	+	High_confidence	3	3	17	1.252809	3.292770	chr3	197953519	197953867	LINE|L2|L2a	+	chr3	197953562	197955851	RPL35A|ENST00000474640.1	+	197953562,197955749	197954147,197955851	1.000000
SK_MEL_5_nuclear_fraction	chr7	95627681	95627720	95627686	-	High_confidence	13	14	81	5.969267	5.069874	chr7	95627441	95627752	SINE|Alu|AluSx	+	chr7	95626486	95627133	MSTRG.53628.1	-	95626486	95627133	0.641975
SK_MEL_5_nuclear_fraction	chr9	5896903	5896931	5896903	+	RAMPAGE_only	4	4	11	0.810641	2.663533	chr9	5896911	5897173	SINE|MIR|MIRb	+	chr9	5890907	5934901	MSTRG.57909.4	+	5890907,5892449,5906884,5908639,5916012,5931765,5934547	5890936,5897653,5906998,5908834,5916195,5931826,5934901	1.000000
SK_MEL_5_nuclear_fraction	chr4	128427977	128428006	128428005	+	High_confidence	23	23	51	3.758427	4.958563	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.686275
SK_MEL_5_nuclear_fraction	chr6	46658546	46658577	46658546	+	High_confidence	6	6	18	1.326504	3.219528	chr6	46658495	46658626	LINE|L2|L2c	-	chr6	46658662	46668747	SLC25A27|ENST00000603486.5	+	46658662,46662375,46664773,46668708	46659046,46662498,46664886,46668747	0.944444
SK_MEL_5_nuclear_fraction	chr14	101995256	101995300	101995299	+	RAMPAGE_only	6	10	19	1.400198	3.195296	chr14	101995329	101995627	SINE|Alu|AluY	+	chr14	101964779	102050154	MSTRG.17953.5	+	101964779,101975711,101979318,101979718,101980363,101983018,101983381,101985686,101987452,101988702,101991526,101994183,101994672,101994985,101995180,101997034,101999988,102000285,102000953,102001534,102002536,102002791,102004517,102005041,102005887,102007007,102008177,102009842,102010275,102010739,102011874,102012313,102015104,102015855,102016348,102017087,102017382,102018450,102019892,102022750,102026573,102027173,102027382,102027618,102027936,102029538,102029818,102030161,102032271,102033064,102033268,102033975,102034324,102036488,102038459,102038697,102039000,102039411,102039637,102040235,102040597,102041573,102042012,102042227,102042383,102042634,102043874,102044273,102044594,102047816,102048515,102049439,102049713,102050070	101964947,101975799,101979492,101979974,101980550,101983290,101983609,101986763,101987632,101988852,101991673,101994324,101994849,101995096,101995300,101997274,102000144,102000399,102001354,102001681,102002703,102002965,102004950,102005236,102006170,102007108,102008337,102010086,102010459,102010952,102012113,102012470,102015332,102016086,102016999,102017294,102017504,102018616,102020056,102022880,102026707,102027288,102027544,102027833,102028141,102029712,102029938,102030282,102032467,102033182,102033484,102034188,102034452,102036642,102038606,102038848,102039254,102039546,102039732,102040410,102040673,102041734,102042124,102042288,102042507,102042748,102044045,102044491,102044698,102048028,102048669,102049582,102049882,102050154	0.789474
SK_MEL_5_nuclear_fraction	chr8	83403738	83403739	83403738	+	High_confidence	6301	6322	6748	497.291537	7.148174	chr8	83402757	83404051	LTR|ERV1|LTR12C	+	chr8	83403757	83452973	MSTRG.56635.3	+	83403757,83447126	83416196,83452973	0.945169
SK_MEL_5_nuclear_fraction	chr15	80059915	80059926	80059918	+	High_confidence	43	48	114	8.401191	4.369057	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.964912
SK_MEL_5_nuclear_fraction	chr16	17403530	17403564	17403530	-	RAMPAGE_only	15	26	55	4.053206	5.095661	chr16	17403361	17403728	LTR|ERVL-MaLR|THE1B	-	chr16	17101768	17470881	XYLT1|ENST00000261381.6	-	17101768,17117645,17127665,17134472,17138354,17141152,17158828,17198211,17200481,17258987,17358011,17470433	17109017,17117979,17127861,17134735,17138531,17141369,17158909,17198414,17200654,17259498,17358050,17470881	0.527273
SK_MEL_5_nuclear_fraction	chr13	94439447	94439590	94439453	-	RAMPAGE_only	10	10	77	5.674488	5.550950	chr13	94439384	94439520	SINE|MIR|MIR3	-	chr13	94436807	94479669	DCT|ENST00000377028.9	-	94436807,94443435,94460090,94462009,94465632,94466557,94468745,94478960	94440076,94443637,94460226,94462189,94465799,94466658,94469045,94479669	1.000000
SK_MEL_5_nuclear_fraction	chr7	118185307	118185323	118185307	+	RAMPAGE_only	3	4	11	0.810641	3.277613	chr7	118185243	118185494	SINE|Alu|AluJo	-	chr7	118184155	118192164	LSM8|ENST00000422760.1	+	118184155,118188277,118191911	118185694,118188405,118192164	0.727273
SK_MEL_5_nuclear_fraction	chr7	104753045	104753253	104753045	-	RAMPAGE_only	7	7	91	6.706214	5.633631	chr7	104752819	104753029	LINE|L1|L1MC2	-	chr7	104738597	104804084	MSTRG.53976.2	-	104738597,104744049,104752714,104761473,104785219,104798336,104802838,104803955	104738955,104744180,104759822,104761580,104786581,104800069,104802963,104804084	0.527473
SK_MEL_5_nuclear_fraction	chr1	150729932	150729967	150729953	-	High_confidence	9	11	50	3.684733	4.893661	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150646224	150729978	MSTRG.3470.1	-	150646224,150661813,150663631,150694655,150696991,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150717137,150719472,150729141,150729573	150648748,150661928,150663763,150694850,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150717282,150719538,150729225,150729978	0.800000
SK_MEL_5_nuclear_fraction	chr4	150944100	150944101	150944100	-	RAMPAGE_only	10	10	15	1.105420	3.807355	chr4	150943828	150944250	LTR|ERVL-MaLR|MLT1F	+	chr4	150264530	151015267	LRBA|ENST00000510413.5	-	150264530,150277852,150282449,150285932,150302627,150310228,150315560,150321190,150325808,150349991,150415437,150435588,150436723,150467672,150471623,150487731,150490917,150588047,150590712,150599006,150683550,150735257,150761782,150798080,150806270,150808319,150817123,150828179,150831816,150844099,150844657,150848817,150849421,150850723,150851884,150867670,150868181,150870524,150871344,150872662,150893051,150896393,150897738,150900048,150905837,150906296,150908333,150908659,150914194,150915607,150916400,150916616,150921197,150928515,150928833,151014426,151015201	150265812,150278004,150282646,150286034,150302792,150310384,150315623,150321368,150325898,150350159,150415590,150435708,150436864,150467785,150471739,150487834,150491035,150588184,150590859,150599131,150683717,150735366,150761847,150798142,150806404,150808398,150817257,150828621,150831976,150844207,150844779,150848998,150849575,150850902,150852943,150867863,150868305,150870606,150871453,150872755,150893149,150896456,150897818,150900217,150905990,150906405,150908467,150908857,150914341,150915727,150916527,150916738,150921293,150928616,150929065,151014861,151015267	0.800000
SK_MEL_5_nuclear_fraction	chr1	161514543	161514576	161514562	+	High_confidence	4	4	11	0.810641	2.846439	chr1	161514472	161514669	LTR|ERV1|MER34B-int	+	chr1	161514619	161518603	FCGR2A|ENST00000486608.1	+	161514619,161517974	161514874,161518603	0.818182
SK_MEL_5_nuclear_fraction	chr13	23471128	23471129	23471128	+	High_confidence	8	8	9	0.663252	2.750000	chr13	23470951	23471361	LINE|L2|L2c	-	chr13	23470839	23487464	MSTRG.14414.4	+	23470839,23483833	23483501,23487464	0.888889
SK_MEL_5_nuclear_fraction	chr11	65431753	65431774	65431773	+	RAMPAGE_only	6	6	23	1.694977	3.975418	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.913043
SK_MEL_5_nuclear_fraction	chr13	114242960	114243005	114243004	+	RAMPAGE_only	3	3	11	0.810641	3.121928	chr13	114242779	114243005	DNA|hAT-Charlie|MER20	+	chr13	114235080	114272723	CDC16|ENST00000252458.6	+	114235080,114236644,114236801,114238989,114239349,114242120,114243256,114243855,114244889,114245999,114246930,114250548,114259334,114261886,114262878,114265149,114272183	114235132,114236699,114236896,114239028,114239490,114242280,114243348,114243989,114244969,114246049,114247004,114250674,114259398,114261948,114263014,114265240,114272723	0.727273
SK_MEL_5_nuclear_fraction	chr8	12796727	12796734	12796727	-	High_confidence	94	105	169	12.454397	4.361809	chr8	12796147	12797467	LTR|ERV1|LTR12C	+	chr8	12765702	12796719	MSTRG.55408.2	-	12765702,12788331,12790756	12778356,12788444,12796719	1.000000
SK_MEL_5_nuclear_fraction	chr18	77127940	77127957	77127950	-	High_confidence	135	138	514	37.879053	5.667809	chr18	77125932	77128521	LINE|L1|L1MD2	+	chr18	77066311	77127712	MBP|ENST00000583798.1	-	77066311,77105210,77127289	77066385,77105286,77127712	0.908560
SK_MEL_5_nuclear_fraction	chr2	88614008	88614029	88614013	-	RAMPAGE_only	4	4	10	0.736947	3.321928	chr2	88613982	88615337	LINE|L2|L2a	+	chr2	88556739	88624929	EIF2AK3|NM_001313915.1	-	88556739,88558916,88562288,88570873,88574665,88576553,88579517,88583429,88585840,88587981,88588760,88590442,88590817,88593271,88595468,88613723,88624745	88557936,88558979,88562390,88571041,88575446,88576703,88579640,88583542,88586061,88588104,88588901,88590605,88591052,88593405,88595663,88613853,88624929	0.800000
SK_MEL_5_nuclear_fraction	chr12	127060613	127060614	127060613	+	High_confidence	32	34	36	2.653008	4.334238	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060494	127062282	MSTRG.14194.1	+	127060494	127062282	0.916667
SK_MEL_5_nuclear_fraction	chr5	80442220	80442541	80442434	+	RAMPAGE_only	11	12	251	18.497359	6.019460	chr5	80442407	80442849	LINE|L2|L2a	-	chr5	80408082	80448188	MSTRG.46396.10	+	80408082,80434108,80436755,80439935,80445262,80448025	80408153,80434217,80439007,80443284,80445405,80448188	0.972112
SK_MEL_5_nuclear_fraction	chr8	83403560	83403621	83403620	+	High_confidence	4	4	33	2.431924	4.124257	chr8	83402757	83404051	LTR|ERV1|LTR12C	+	chr8	83403757	83452973	MSTRG.56635.3	+	83403757,83447126	83416196,83452973	1.000000
SK_MEL_5_nuclear_fraction	chr2	12363260	12363283	12363260	+	RAMPAGE_only	4	4	10	0.736947	3.121928	chr2	12362875	12363431	LTR|ERVL|MLT2B3	+	chr2	12314316	12398651	MSTRG.30145.10	+	12314316,12397521	12314405,12398651	0.800000
SK_MEL_5_nuclear_fraction	chr13	70249968	70249995	70249968	+	High_confidence	2	3	12	0.884336	3.277613	chr13	70249527	70250006	LTR|ERVL|MER70B	+	chr13	70249996	70251544	MSTRG.15309.2	+	70249996,70250901	70250396,70251544	0.666667
SK_MEL_5_nuclear_fraction	chr7	104778789	104778830	104778829	-	RAMPAGE_only	4	5	14	1.031725	3.238901	chr7	104778711	104778955	SINE|MIR|MIR	+	chr7	104768668	104804084	MSTRG.53976.7	-	104768668,104785219,104785730,104802838,104803955	104779346,104785378,104800069,104802963,104804084	0.857143
SK_MEL_5_nuclear_fraction	chr10	102449836	102449845	102449836	+	High_confidence	3	3	11	0.810641	3.121928	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.636364
SK_MEL_5_nuclear_fraction	chr21	8989561	8989597	8989573	+	RAMPAGE_only	3	3	15	1.105420	3.467720	chr21	8989496	8989661	LTR|ERVL|MER21B	-	chr21	8988001	8997306	MSTRG.36169.3	+	8988001,8996710	8996662,8997306	0.933333
SK_MEL_5_nuclear_fraction	chr7	119703923	119703934	119703923	-	RAMPAGE_only	4	6	13	0.958031	3.026987	chr7	119703788	119704374	LINE|L1|L1MCb	-	chr7	119698873	119713774	MSTRG.54298.6	-	119698873,119713665	119704972,119713774	1.000000
SK_MEL_5_nuclear_fraction	chr3	187021850	187021852	187021850	+	High_confidence	8	14	15	1.105420	2.950212	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.866667
SK_MEL_5_nuclear_fraction	chr5	97088996	97089002	97088999	+	High_confidence	10	10	20	1.473893	3.784184	chr5	97088919	97089287	LTR|ERVL-MaLR|THE1B	+	chr5	97089074	97437217	LIX1-AS1|ENST00000504578.2	+	97089074,97101758,97103025,97183007,97183504,97431743,97436552	97089204,97102132,97103094,97183240,97183669,97431900,97437217	0.800000
SK_MEL_5_nuclear_fraction	chrX	141494916	141494917	141494916	+	RAMPAGE_only	20	20	21	1.547588	3.884184	chrX	141494718	141495075	LTR|ERVL-MaLR|THE1A	+	chrX	141502848	141649939	SPANXA2-OT1|NR_037183.2	+	141502848,141514711,141520471,141648798	141503239,141514829,141520519,141649939	0.619048
SK_MEL_5_nuclear_fraction	chr8	83404401	83404422	83404408	+	High_confidence	27	27	86	6.337740	4.982116	chr8	83404212	83404494	SINE|Alu|AluSz	+	chr8	83403757	83452973	MSTRG.56635.3	+	83403757,83447126	83416196,83452973	1.000000
SK_MEL_5_nuclear_fraction	chr7	104757621	104757671	104757670	-	RAMPAGE_only	8	8	39	2.874092	4.509385	chr7	104757029	104758365	LINE|L1|L1PA16	+	chr7	104738597	104804084	MSTRG.53976.2	-	104738597,104744049,104752714,104761473,104785219,104798336,104802838,104803955	104738955,104744180,104759822,104761580,104786581,104800069,104802963,104804084	1.000000
SK_MEL_5_nuclear_fraction	chr2	84443652	84443683	84443682	-	RAMPAGE_only	2	2	8	0.589557	2.807355	chr2	84443641	84443951	LINE|L2|L2a	+	chr2	84441246	84459246	SUCLG1|ENST00000430989.1	-	84441246,84443220,84449648,84459172	84441459,84443400,84449752,84459246	0.500000
SK_MEL_5_nuclear_fraction	chr8	83406079	83406430	83406252	+	RAMPAGE_only	12	13	209	15.402183	4.489138	chr8	83406236	83406342	LTR|ERV1|LTR37-int	+	chr8	83403757	83452973	MSTRG.56635.3	+	83403757,83447126	83416196,83452973	0.995215
SK_MEL_5_nuclear_fraction	chr17	601980	602107	602048	-	RAMPAGE_only	138	141	1977	145.694334	6.292312	chr17	602038	602389	LINE|L2|L2c	+	chr17	518952	676407	VPS53|ENST00000576149.5	-	518952,519825,521600,532841,537027,551871,553379,560425,562502,586269,599944,601794,623532,627173,628087,631549,676179	519298,519930,521738,532911,537176,551950,553462,560573,562745,586364,600094,601896,623674,627316,628231,631628,676407	0.948407
SK_MEL_5_nuclear_fraction	chr14	67587799	67587830	67587799	+	RAMPAGE_only	2	3	9	0.663252	2.750000	chr14	67587640	67587845	SINE|Alu|AluSx	-	chr14	67586410	67589533	PLEKHH1|ENST00000558214.1	+	67586410,67587073	67586949,67589533	0.888889
SK_MEL_5_nuclear_fraction	chr12	126772237	126772481	126772250	-	High_confidence	19	21	189	13.928290	4.895199	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126752340	126772262	LINC00944|ENST00000536517.1	-	126752340,126760931,126772078	126752451,126761057,126772262	0.714286
SK_MEL_5_nuclear_fraction	chr12	8681673	8681677	8681676	+	High_confidence	10	10	17	1.252809	3.969816	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.823529
SK_MEL_5_nuclear_fraction	chr6	73729139	73729165	73729149	+	RAMPAGE_only	10	10	34	2.505618	4.184863	chr6	73728830	73729330	LTR|ERVL-MaLR|MLT1F1	-	chr6	73722940	73810172	CD109|ENST00000649530.1	+	73722940,73723250,73730343,73736382,73756642,73758943,73762383,73762740,73763575,73765929,73766758,73766947,73768054,73771428,73780423,73781258,73782613,73783706,73785363,73787233,73788467,73792625,73803219,73806843,73808082,73809983	73723159,73723279,73730574,73736508,73756682,73759028,73762480,73762882,73763685,73766154,73766860,73767010,73768231,73771581,73780498,73781319,73782755,73783824,73785477,73787452,73788612,73792802,73803301,73807072,73808248,73810172	0.911765
SK_MEL_5_nuclear_fraction	chr7	119703785	119703863	119703785	-	RAMPAGE_only	6	6	65	4.790153	4.380916	chr7	119703379	119703775	LINE|L1|L1MC3	-	chr7	119698873	119713774	MSTRG.54298.6	-	119698873,119713665	119704972,119713774	0.984615
SK_MEL_5_nuclear_fraction	chrX	87728655	87728691	87728690	-	High_confidence	44	46	249	18.349969	5.445132	chrX	87728475	87728831	LTR|ERV1|MER61A	-	chrX	87723829	87728685	MSTRG.61518.1	-	87723829	87728685	1.000000
SK_MEL_5_nuclear_fraction	chr13	46467230	46467292	46467291	-	High_confidence	6	7	24	1.768672	2.544024	chr13	46467221	46467662	LINE|L1|L1MDa	-	chr13	46455134	46466816	LINC01198|ENST00000648041.1	-	46455134,46457839,46464735,46465903,46466608	46455511,46457913,46464819,46465987,46466816	0.875000
SK_MEL_5_nuclear_fraction	chr9	5906726	5906754	5906749	+	RAMPAGE_only	3	3	13	0.958031	3.251629	chr9	5906614	5906797	SINE|MIR|MIRb	-	chr9	5892510	5934901	MSTRG.57909.7	+	5892510,5897556,5906884,5908639,5931768	5892551,5897653,5906998,5916195,5934901	0.846154
SK_MEL_5_nuclear_fraction	chr2	61836649	61836670	61836649	-	High_confidence	2	2	12	0.884336	3.277613	chr2	61836582	61836873	SINE|Alu|AluSx	-	chr2	61827103	61836484	FAM161A|ENST00000478494.1	-	61827103,61836009	61827258,61836484	0.583333
SK_MEL_5_nuclear_fraction	chr7	131075874	131075880	131075874	-	RAMPAGE_only	5	5	11	0.810641	2.646439	chr7	131075705	131076129	LTR|ERVL-MaLR|MSTC	-	chr7	130945609	131107979	LINC-PINT|ENST00000431189.1	-	130945609,130967388,130984052,131052424,131107719	130945835,130967517,130984109,131052555,131107979	0.545455
SK_MEL_5_nuclear_fraction	chr3	185922530	185922565	185922559	-	High_confidence	3	3	11	0.810641	2.921928	chr3	185922388	185922657	DNA|hAT-Charlie|MER58B	+	chr3	185917327	185922107	TRA2B|ENST00000414862.5	-	185917327,185918364,185919436,185921103,185922010	185917725,185918435,185919496,185921187,185922107	0.636364
SK_MEL_5_nuclear_fraction	chr18	32041844	32041898	32041881	+	High_confidence	6	6	43	3.168870	4.500981	chr18	32041620	32041929	SINE|Alu|AluYa5	-	chr18	32041905	32068550	RNF125|ENST00000583814.5	+	32041905,32045641,32068297	32042273,32045732,32068550	0.813953
SK_MEL_5_nuclear_fraction	chr12	93173473	93173486	93173479	+	High_confidence	21	24	69	5.084931	4.735640	chr12	93173471	93174015	LINE|L2|L2c	-	chr12	93174365	93181832	LOC102724933|NR_120492.1	+	93174365,93175899,93181304	93174976,93176029,93181832	0.681159
SK_MEL_5_nuclear_fraction	chr8	89587334	89587458	89587334	-	RAMPAGE_only	8	8	44	3.242565	4.833014	chr8	89585839	89587570	LINE|L1|L1PA14	-	chr8	89584950	89611889	MSTRG.56772.4	-	89584950,89596418,89596933,89611433	89588050,89596512,89609494,89611889	0.977273
SK_MEL_5_nuclear_fraction	chr11	70314969	70314974	70314969	-	High_confidence	4	4	10	0.736947	3.169925	chr11	70314793	70315158	LTR|ERVL-MaLR|THE1D	-	chr11	70314252	70314622	MSTRG.9911.1	-	70314252	70314622	0.500000
SK_MEL_5_nuclear_fraction	chr1	42628680	42628682	42628680	+	RAMPAGE_only	29	44	47	3.463649	4.889199	chr1	42628486	42628840	LTR|ERVL-MaLR|THE1A	+	chr1	42534888	42654664	CCDC30|NM_001080850.2	+	42534888,42536475,42539172,42545409,42556155,42566295,42577019,42581359,42589320,42610977,42637236,42642472,42644692,42646134,42653375,42653817	42534989,42536601,42539310,42545579,42556405,42566475,42577229,42581514,42589483,42611090,42637378,42642609,42644807,42646317,42653443,42654664	0.702128
SK_MEL_5_nuclear_fraction	chr10	65570509	65570538	65570519	+	High_confidence	46	59	281	20.708198	6.265932	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570874	65615757	LINC01515|ENST00000593568.1	+	65570874,65572934,65585484,65615635	65571579,65573056,65585567,65615757	0.640569
SK_MEL_5_nuclear_fraction	chr5	103177238	103177272	103177271	+	High_confidence	3	3	8	0.589557	2.750000	chr5	103177225	103177454	DNA|TcMar-Tigger|Tigger4a	-	chr5	103177918	103201533	PPIP5K2|ENST00000511022.2	+	103177918,103180020,103184671,103186319,103187313,103190841,103194899,103201521	103177980,103180188,103184744,103186439,103187376,103190982,103195025,103201533	0.500000
SK_MEL_5_nuclear_fraction	chr7	20508198	20508205	20508198	+	High_confidence	3	3	10	0.736947	3.169925	chr7	20508165	20508589	LTR|ERVL|LTR33A	+	chr7	20508509	20514635	MSTRG.52142.1	+	20508509,20512027	20509177,20514635	0.700000
SK_MEL_5_nuclear_fraction	chr13	64075713	64075769	64075713	-	High_confidence	32	36	221	16.286519	4.997564	chr13	64074921	64075752	LTR|ERV1|MER52A	-	chr13	63986370	64076011	LINC00355|ENST00000456627.1	-	63986370,63990095,64002384,64003347,64034346,64075241	63987039,63990200,64002409,64003465,64034537,64076011	0.877828
SK_MEL_5_nuclear_fraction	chr3	58526749	58526766	58526765	-	High_confidence	6	6	10	0.736947	2.521928	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	0.700000
SK_MEL_5_nuclear_fraction	chr4	158173024	158173061	158173024	-	High_confidence	11	11	35	2.579313	4.822001	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158124603	158172736	FAM198B|ENST00000296530.12	-	158124603,158130785,158155610,158170465,158172338	158127614,158131012,158155825,158171599,158172736	0.942857
SK_MEL_5_nuclear_fraction	chr18	14848038	14848095	14848094	+	RAMPAGE_only	7	8	47	3.463649	4.639279	chr18	14847634	14848304	LINE|L1|L1MEc	-	chr18	14837148	14852738	ANKRD30B|ENST00000320584.8	+	14837148,14837614,14840587,14842896,14843023,14848715,14850213,14851508	14837289,14837676,14840678,14842925,14843096,14848929,14850382,14852738	0.787234
SK_MEL_5_nuclear_fraction	chr11	90612389	90612425	90612389	+	RAMPAGE_only	3	4	20	1.473893	3.932138	chr11	90612356	90612437	LINE|L2|L2	+	chr11	90611142	90614553	MSTRG.10414.1	+	90611142	90614553	0.900000
SK_MEL_5_nuclear_fraction	chr3	123949796	123950003	123949796	-	RAMPAGE_only	6	6	147	10.833114	5.681154	chr3	123949742	123950001	LINE|L2|L2c	+	chr3	123946803	123961209	MSTRG.40662.19	-	123946803,123947279,123948690,123948895,123949383,123956354,123961143	123947057,123947319,123948785,123949132,123956115,123956795,123961209	0.897959
SK_MEL_5_nuclear_fraction	chr3	69959018	69959027	69959018	+	RAMPAGE_only	3	3	10	0.736947	3.169925	chr3	69958969	69959172	LINE|L1|L1PB1	+	chr3	69936722	69965248	MITF|ENST00000531774.1	+	69936722,69937821,69939097,69941235,69949050,69951829,69956454,69959272,69964846	69936755,69937881,69939181,69941331,69949168,69951886,69956530,69959420,69965248	0.800000
SK_MEL_5_nuclear_fraction	chr7	104752762	104752964	104752806	-	RAMPAGE_only	50	52	349	25.719435	6.450328	chr7	104748901	104752819	LTR|ERVK|HERVK-int	-	chr7	104738596	104757748	LHFPL3-AS1|ENST00000433514.5	-	104738596,104744049,104752714,104757608	104738984,104744180,104752803,104757748	0.681948
SK_MEL_5_nuclear_fraction	chr6	118651538	118651602	118651563	-	High_confidence	8	8	32	2.358229	4.030639	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	1.000000
SK_MEL_5_nuclear_fraction	chr15	69423274	69423313	69423312	+	High_confidence	2	2	7	0.515863	2.584963	chr15	69423345	69423466	SINE|MIR|MIRb	+	chr15	69422908	69436259	KIF23|ENST00000559283.1	+	69422908,69426069,69426335,69429110,69435482,69435651,69436148	69423329,69426182,69426457,69429213,69435562,69435782,69436259	0.714286
SK_MEL_5_nuclear_fraction	chr13	91782461	91782465	91782461	-	High_confidence	349	384	934	68.830808	5.422356	chr13	91782285	91782651	LTR|ERVL-MaLR|THE1D	-	chr13	91781753	91782169	MSTRG.15602.1	-	91781753	91782169	0.919700
SK_MEL_5_nuclear_fraction	chr6	113873326	113873388	113873346	-	High_confidence	10	12	68	5.011237	5.195857	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.735294
SK_MEL_5_nuclear_fraction	chr1	70947347	70947396	70947392	+	High_confidence	56	63	251	18.497359	6.585927	chr1	70947197	70947555	LTR|ERVL-MaLR|THE1A	+	chr1	70947330	70966064	MSTRG.2189.3	+	70947330,70961047,70964845	70947475,70961562,70966064	0.697211
SK_MEL_5_nuclear_fraction	chr18	32041731	32041743	32041731	+	High_confidence	135	140	221	16.286519	5.713741	chr18	32041620	32041929	SINE|Alu|AluYa5	-	chr18	32041822	32068489	RNF125|ENST00000583384.5	+	32041822,32042178,32045641,32065901,32068297	32041983,32042273,32045732,32066009,32068489	0.859729
SK_MEL_5_nuclear_fraction	chr3	69937635	69937660	69937635	+	High_confidence	3	3	7	0.515863	2.807355	chr3	69937675	69937712	SINE|MIR|MIRb	+	chr3	69936828	69941331	MITF|ENST00000461014.1	+	69936828,69937821,69939097,69941235	69937172,69938049,69939181,69941331	0.714286
SK_MEL_5_nuclear_fraction	chr8	75324425	75324470	75324469	-	High_confidence	4	4	14	1.031725	3.378783	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.500000
SK_MEL_5_nuclear_fraction	chr9	83026489	83026490	83026489	-	RAMPAGE_only	8	9	12	0.884336	3.277613	chr9	83026313	83026686	LTR|ERVL-MaLR|THE1D	-	chr9	82979584	83063128	RASEF|NM_152573.3	-	82979584,82990390,82992905,82997011,82998364,83000168,83000432,83000895,83004497,83005415,83007436,83009640,83012433,83015804,83022335,83025774,83062436	82982782,82990467,82993025,82997126,82998446,83000316,83000570,83001130,83004586,83005500,83007505,83009756,83012511,83015900,83022426,83025921,83063128	0.833333
SK_MEL_5_nuclear_fraction	chr12	28825945	28825962	28825945	-	High_confidence	8	8	27	1.989756	3.958229	chr12	28825676	28826170	LTR|ERVL|MLT2B3	-	chr12	28821974	28825831	AC022081.1|ENST00000537327.1	-	28821974,28825697	28822273,28825831	0.888889
SK_MEL_5_nuclear_fraction	chr11	65434285	65434317	65434291	+	RAMPAGE_only	2	2	10	0.736947	3.169925	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.900000
SK_MEL_5_nuclear_fraction	chr11	125874376	125874412	125874376	-	High_confidence	21	24	105	7.737939	5.719863	chr11	125874041	125875038	LTR|ERV1|HUERS-P3-int	+	chr11	125873448	125874528	AP000842.3|ENST00000569238.1	-	125873448	125874528	0.819048
SK_MEL_5_nuclear_fraction	chr1	151166632	151166683	151166642	+	High_confidence	9	13	52	3.832122	4.808367	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	0.903846
SK_MEL_5_nuclear_fraction	chr10	98153950	98153962	98153961	+	High_confidence	11	19	32	2.358229	4.361792	chr10	98153910	98154027	LTR|ERVL-MaLR|MLT1J	-	chr10	98153969	98244894	MSTRG.7484.4	+	98153969,98156092,98162882,98163292,98186466,98208100,98231511,98234445,98235424,98236023,98244090	98154033,98156147,98162975,98163397,98186563,98209899,98231687,98234516,98235520,98236164,98244894	0.531250
SK_MEL_5_nuclear_fraction	chr6	56839178	56839181	56839178	-	RAMPAGE_only	59	61	105	7.737939	4.965190	chr6	56839131	56839380	LTR|ERVL-MaLR|MLT1J	+	chr6	56670487	56843146	DST|ENST00000521821.1	-	56670487,56699652,56701887,56704279,56735227,56843054	56670807,56699745,56701965,56704369,56735289,56843146	0.780952
SK_MEL_5_nuclear_fraction	chrX	14029410	14029463	14029417	-	High_confidence	9	13	36	2.653008	4.395999	chrX	14029400	14029569	DNA|hAT-Charlie|MER5B	-	chrX	14006712	14029840	MSTRG.60580.1	-	14006712,14008870,14020077,14021463,14026139	14007870,14009169,14020534,14021511,14029840	0.944444
SK_MEL_5_nuclear_fraction	chr20	18301015	18301079	18301015	+	RAMPAGE_only	4	4	19	1.400198	3.787144	chr20	18298988	18302118	LINE|L1|L1MB3	+	chr20	18299363	18316991	MSTRG.35084.18	+	18299363,18306297,18315071	18305807,18306393,18316991	1.000000
SK_MEL_5_nuclear_fraction	chr2	37342783	37342801	37342800	+	High_confidence	7	12	23	1.694977	3.969002	chr2	37342693	37343084	LTR|ERVL|LTR16A	+	chr2	37342826	37367290	QPCT|ENST00000650442.1	+	37342826,37352788,37359579,37367231	37342923,37352935,37359858,37367290	0.695652
SK_MEL_5_nuclear_fraction	chr4	44016697	44016773	44016697	+	High_confidence	89	89	570	42.005954	6.460826	chr4	44016424	44016724	LTR|ERV1|MER51A	-	chr4	44016860	44022061	LVCAT1|NR_131959.1	+	44016860,44019750	44017062,44022061	0.552632
SK_MEL_5_nuclear_fraction	chr12	28705993	28706080	28706072	-	RAMPAGE_only	4	4	22	1.621282	4.221928	chr12	28705941	28706031	SINE|MIR|MIRb	-	chr12	28692344	28795006	MSTRG.12054.3	-	28692344,28715327,28793641,28794303	28708113,28715487,28793745,28795006	0.909091
SK_MEL_5_nuclear_fraction	chr22	40668785	40668798	40668791	-	High_confidence	27	35	86	6.337740	4.570639	chr22	40668729	40668953	LTR|ERVL-MaLR|MSTA	+	chr22	40659600	40668856	MSTRG.38001.1	-	40659600,40668320	40660965,40668856	0.883721
SK_MEL_5_nuclear_fraction	chr19	40772059	40772060	40772059	+	RAMPAGE_only	72	72	72	5.306015	4.237266	chr19	40771932	40772225	SINE|Alu|AluJo	-	chr19	40775176	40777493	MIA|NM_001202553.1	+	40775176,40775536,40775751,40776968,40777396	40775211,40775669,40775885,40777079,40777493	0.847222
SK_MEL_5_nuclear_fraction	chr11	75031380	75031412	75031411	-	High_confidence	29	31	149	10.980504	6.272609	chr11	75031343	75031611	LINE|L2|L2	+	chr11	75028786	75031375	MSTRG.10083.1	-	75028786	75031375	0.979866
SK_MEL_5_nuclear_fraction	chr11	67605644	67605690	67605689	+	High_confidence	10	10	45	3.316260	4.644107	chr11	67605625	67605829	SINE|MIR|MIRc	+	chr11	67605652	67612554	NDUFV1|ENST00000647561.1	+	67605652,67606359,67608395,67608551,67609451,67610380,67610994,67611402,67611896,67612119,67612371	67606044,67607076,67608478,67608722,67609635,67610570,67611207,67611569,67611978,67612265,67612554	0.933333
SK_MEL_5_nuclear_fraction	chr21	10326819	10327138	10326819	-	RAMPAGE_only	14	15	190	14.001985	5.867638	chr21	10326479	10327674	LINE|L1|L1PA16	-	chr21	10325559	10342713	MSTRG.36198.1	-	10325559	10342713	1.000000
SK_MEL_5_nuclear_fraction	chr11	58584673	58584678	58584673	+	RAMPAGE_only	8	10	16	1.179114	3.640224	chr11	58584571	58584747	DNA|hAT-Charlie|MER3	-	chr11	58579171	58624566	ZFP91-CNTF|ENST00000389919.8	+	58579171,58584855,58609829,58610297,58610949,58611603,58612277,58612761,58614228,58616715,58617195,58622765,58624033	58579622,58584884,58610039,58610334,58611054,58611738,58612328,58612840,58614343,58616815,58617568,58622866,58624566	0.562500
SK_MEL_5_nuclear_fraction	chr21	33945809	33945810	33945809	-	RAMPAGE_only	95	95	95	7.000992	3.610867	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
SK_MEL_5_nuclear_fraction	chr11	26597182	26597205	26597182	-	High_confidence	289	306	719	52.986458	6.523061	chr11	26597150	26597675	LTR|ERV1|LTR17	-	chr11	26580267	26597446	MSTRG.8809.3	-	26580267,26591270,26597118	26584483,26591959,26597446	0.799722
SK_MEL_5_nuclear_fraction	chr17	8042161	8042184	8042180	+	RAMPAGE_only	6	6	18	1.326504	2.974938	chr17	8041994	8042242	LTR|ERVL-MaLR|MLT1O	-	chr17	8039100	8049134	ALOX15B|ENST00000571240.1	+	8039100,8039385,8039901,8042368,8044828,8045237,8045482,8046667,8046906,8047257,8047563,8047744,8048385	8039302,8039605,8039983,8042884,8045001,8045384,8045686,8046754,8047076,8047379,8047664,8047915,8049134	0.888889
SK_MEL_5_nuclear_fraction	chr12	9674000	9674001	9674000	+	High_confidence	4	4	7	0.515863	2.807355	chr12	9672445	9674544	LINE|L1|L1PA10	-	chr12	9674296	9698472	MSTRG.11559.41	+	9674296,9687901,9692827,9693033,9694759	9681033,9688086,9692931,9693948,9698472	0.857143
SK_MEL_5_nuclear_fraction	chr13	83500752	83500783	83500782	+	RAMPAGE_only	3	3	10	0.736947	2.725481	chr13	83500707	83500858	LINE|L1|L1MEg	+	chr13	83496680	83507003	MSTRG.15490.3	+	83496680,83498677	83496804,83507003	0.800000
SK_MEL_5_nuclear_fraction	chr2	186607473	186607475	186607473	+	RAMPAGE_only	8	12	14	1.031725	3.182006	chr2	186607374	186607648	LTR|ERVL-MaLR|MLT1I	+	chr2	186590064	186680901	MSTRG.33498.1	+	186590064,186602020,186622338,186625472,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186590523,186602151,186622430,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186680901	0.928571
SK_MEL_5_nuclear_fraction	chr13	77907418	77907443	77907442	-	RAMPAGE_only	4	4	13	0.958031	3.418296	chr13	77907101	77907586	LTR|ERVL|MLT2B1	+	chr13	77895525	77919483	MSTRG.15396.5	-	77895525,77899858,77900520,77901057,77903155,77903494,77919396	77898334,77899967,77900654,77901207,77903360,77918624,77919483	0.923077
SK_MEL_5_nuclear_fraction	chr19	45739662	45739663	45739662	+	RAMPAGE_only	5	5	8	0.589557	2.521641	chr19	45739451	45739778	LTR|ERVL-MaLR|MLT1K	-	chr19	45733250	45764534	BHMG1|ENST00000457052.2	+	45733250,45735376,45739625,45745191,45750674,45753650,45754478,45755969,45757176,45758877,45759413,45761678,45761938,45763337,45763970	45733666,45735447,45739730,45745321,45750786,45753788,45754724,45756078,45757277,45759033,45759490,45761867,45762183,45763427,45764534	0.625000
SK_MEL_5_nuclear_fraction	chr8	123251176	123251182	123251179	+	High_confidence	59	60	134	9.875084	5.821452	chr8	123251043	123251381	LTR|ERVL-MaLR|MSTA	+	chr8	123251207	123252639	MSTRG.57300.1	+	123251207	123252639	0.723881
SK_MEL_5_nuclear_fraction	chr5	27475543	27475769	27475679	+	RAMPAGE_only	11	16	190	14.001985	5.018238	chr5	27472714	27477542	LTR|ERV1|MER61-int	+	chr5	27472291	27496280	MSTRG.45475.4	+	27472291,27475534,27484925,27492405	27472519,27478916,27492323,27496280	0.994737
SK_MEL_5_nuclear_fraction	chr8	83408057	83408192	83408123	+	RAMPAGE_only	10	10	72	5.306015	4.492036	chr8	83407839	83408515	LTR|ERV1|MER92-int	+	chr8	83403757	83452973	MSTRG.56635.3	+	83403757,83447126	83416196,83452973	0.958333
SK_MEL_5_nuclear_fraction	chr3	135965718	135965765	135965718	+	High_confidence	23	27	143	10.538336	6.108642	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.965035
SK_MEL_5_nuclear_fraction	chr7	100349831	100349855	100349854	+	RAMPAGE_only	6	6	16	1.179114	3.500000	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336124	100351900	MSTRG.53807.7	+	100336124,100336300,100338178,100338772,100345864,100349716,100351251	100336220,100336337,100338264,100338889,100345968,100349887,100351900	0.687500
SK_MEL_5_nuclear_fraction	chr15	42404759	42404848	42404759	+	High_confidence	600	677	3199	235.749204	8.232895	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404779	42411942	CAPN3|ENST00000569136.5	+	42404779,42405925,42408210,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42405943,42408324,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42411942	0.556424
SK_MEL_5_nuclear_fraction	chr11	78469742	78469774	78469769	-	RAMPAGE_only	3	3	12	0.884336	2.732159	chr11	78469641	78470190	LINE|L2|L2a	-	chr11	78436188	78478778	MSTRG.10224.2	-	78436188,78441090,78443660,78453969,78455782,78465875,78469246,78478437,78478584	78436814,78441117,78443758,78454045,78457406,78466013,78469313,78478475,78478778	0.750000
SK_MEL_5_nuclear_fraction	chr22	47631707	47631788	47631777	+	High_confidence	62	130	761	56.081633	7.333758	chr22	47631336	47631805	LTR|ERVL|MLT2B1	-	chr22	47631701	47798465	MSTRG.38303.5	+	47631701,47635179,47686199,47686548,47686802,47738433,47798113	47631886,47635353,47686312,47686695,47686938,47738576,47798465	0.611038
SK_MEL_5_nuclear_fraction	chr7	30563929	30563960	30563929	-	High_confidence	2	2	11	0.810641	3.121928	chr7	30563654	30564076	LTR|ERVL-MaLR|MLT1C	-	chr7	30533241	30563998	MSTRG.52469.22	-	30533241,30550635,30552099,30561465,30562741	30533413,30550781,30552179,30562128,30563998	0.818182
SK_MEL_5_nuclear_fraction	chr9	83026523	83026540	83026523	-	RAMPAGE_only	4	4	16	1.179114	3.456565	chr9	83026313	83026686	LTR|ERVL-MaLR|THE1D	-	chr9	82979584	83063128	RASEF|NM_152573.3	-	82979584,82990390,82992905,82997011,82998364,83000168,83000432,83000895,83004497,83005415,83007436,83009640,83012433,83015804,83022335,83025774,83062436	82982782,82990467,82993025,82997126,82998446,83000316,83000570,83001130,83004586,83005500,83007505,83009756,83012511,83015900,83022426,83025921,83063128	0.875000
SK_MEL_5_nuclear_fraction	chr7	119700542	119700605	119700560	-	RAMPAGE_only	3	3	15	1.105420	3.182006	chr7	119700517	119700605	LINE|L1|L1M5	-	chr7	119698873	119713774	MSTRG.54298.6	-	119698873,119713665	119704972,119713774	0.933333
SK_MEL_5_nuclear_fraction	chr11	26597423	26597470	26597449	-	High_confidence	9	10	44	3.242565	4.970573	chr11	26597150	26597675	LTR|ERV1|LTR17	-	chr11	26580267	26597446	MSTRG.8809.3	-	26580267,26591270,26597118	26584483,26591959,26597446	0.727273
SK_MEL_5_nuclear_fraction	chr17	17686042	17686071	17686042	+	RAMPAGE_only	3	3	13	0.958031	3.251629	chr17	17685599	17686175	LINE|L2|L2b	+	chr17	17681728	17810689	MSTRG.23628.2	+	17681728,17724027,17792932,17803755,17809969	17681793,17724159,17798513,17809439,17810689	0.615385
SK_MEL_5_nuclear_fraction	chr2	191683285	191683342	191683285	+	High_confidence	4	4	27	1.989756	4.078419	chr2	191683258	191683377	SINE|tRNA-RTE|MamSINE1	+	chr2	191683504	191685076	NABP1|ENST00000462824.1	+	191683504,191684229,191684876	191683804,191684296,191685076	0.592593
SK_MEL_5_nuclear_fraction	chr14	101731384	101731493	101731413	+	High_confidence	31	31	125	9.211832	5.752813	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.584000
SK_MEL_5_nuclear_fraction	chr7	107580452	107580507	107580506	+	High_confidence	6	6	22	1.621282	4.004886	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580467	107621870	MSTRG.54104.13	+	107580467,107583881,107593954,107595866,107600396,107613331,107613653	107580864,107583982,107594105,107596002,107600505,107613432,107621870	0.727273
SK_MEL_5_nuclear_fraction	chr12	9448772	9448773	9448772	-	High_confidence	12	12	12	0.884336	3.022055	chr12	9448691	9448811	SINE|MIR|MIR3	+	chr12	9413665	9448266	MSTRG.11558.10	-	9413665,9414291,9417540,9418774,9419111,9419488,9419980,9420172,9420514,9421817,9424223,9424527,9425470,9425715,9426081,9427632,9427820,9429131,9429559,9430587,9432365,9433307,9434094,9436946,9437402,9438010,9443534,9447981	9413826,9416075,9418699,9418929,9419190,9419573,9420081,9420255,9421491,9421890,9424348,9424640,9425602,9425824,9426120,9427700,9427865,9429211,9429606,9430740,9433056,9433415,9434140,9437104,9437489,9438259,9443682,9448266	1.000000
SK_MEL_5_nuclear_fraction	chr1	235734938	235734958	235734938	-	RAMPAGE_only	2	3	8	0.589557	2.750000	chr1	235734752	235735085	LINE|L1|L1MC5a	+	chr1	235661042	235738007	LYST|ENST00000473037.5	-	235661042,235663983,235664464,235677090,235677479,235686948,235693349,235697082,235702746,235709090,235712056,235715200,235716711,235720660,235724027,235728075,235729595,235730846,235731031,235733502,235733829,235734482	235663078,235664055,235664621,235677188,235677619,235687047,235693486,235697272,235702977,235709308,235712197,235715357,235716778,235720905,235724180,235728131,235729657,235730943,235731177,235733691,235733906,235738007	1.000000
SK_MEL_5_nuclear_fraction	chr18	12119657	12119673	12119672	+	RAMPAGE_only	54	58	121	8.917053	6.017965	chr18	12119376	12119695	LTR|ERVL-MaLR|MLT1A0	-	chr18	12102705	12129749	ANKRD62|ENST00000418274.2	+	12102705,12103157,12107294,12115087,12115392,12122302,12124136,12125459,12127747	12102788,12103228,12107467,12115121,12115534,12122516,12124320,12126383,12129749	0.818182
SK_MEL_5_nuclear_fraction	chr3	58842583	58842616	58842583	-	RAMPAGE_only	3	3	9	0.663252	2.641604	chr3	58842154	58848179	LINE|L1|L1PA2	+	chr3	58725867	58849226	C3orf67|ENST00000484535.5	-	58725867,58734471,58753768,58806394,58831685,58849031	58728137,58734558,58753863,58806456,58831889,58849226	0.777778
SK_MEL_5_nuclear_fraction	chr20	50267467	50267500	50267477	+	High_confidence	22	31	134	9.875084	5.644406	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.850746
SK_MEL_5_nuclear_fraction	chrX	73999901	73999916	73999901	+	RAMPAGE_only	2	2	8	0.589557	2.807355	chrX	73999206	73999999	LINE|L1|L1M3de	+	chrX	73944341	74000491	JPX|ENST00000414209.5	+	73944341,73944583,73946998,73998767,73998953	73944465,73944662,73947374,73998844,74000491	0.625000
SK_MEL_5_nuclear_fraction	chr5	9265489	9265549	9265548	-	High_confidence	10	10	37	2.726702	4.239098	chr5	9265168	9265679	LTR|ERVL|LTR53	+	chr5	9202123	9265545	SEMA5A|ENST00000514923.4	-	9202123,9224673,9226868,9237827,9265433	9202240,9224887,9226967,9237890,9265545	0.567568
SK_MEL_5_nuclear_fraction	chr6	161216787	161216809	161216792	-	RAMPAGE_only	5	5	12	0.884336	3.084963	chr6	161216582	161216931	LTR|ERVL-MaLR|THE1A	-	chr6	161165837	161274032	AGPAT4|ENST00000366905.3	-	161165837,161232035,161273937	161166417,161232302,161274032	0.666667
SK_MEL_5_nuclear_fraction	chr17	59834048	59834049	59834048	+	RAMPAGE_only	290	379	379	27.930275	4.034215	chr17	59833955	59834256	SINE|Alu|AluSq2	-	chr17	59837627	59840223	VMP1|ENST00000591782.1	+	59837627,59838294,59839767	59837797,59838397,59840223	0.693931
SK_MEL_5_nuclear_fraction	chr2	11763051	11763063	11763051	+	RAMPAGE_only	9	9	15	1.105420	2.656565	chr2	11762961	11763163	LINE|L2|L2	-	chr2	11746633	11827409	MSTRG.30138.13	+	11746633,11763022,11765532,11767762,11771371,11773619,11779518,11782200,11783828,11787073,11788386,11791913,11795407,11802906,11804422,11805069,11815087,11819483,11820410,11824631	11746671,11763286,11765733,11767858,11771679,11773745,11779645,11782507,11785076,11787167,11788456,11792006,11795487,11803033,11804571,11805156,11815240,11819598,11820514,11827409	0.800000
SK_MEL_5_nuclear_fraction	chr13	42818428	42818469	42818436	-	RAMPAGE_only	10	11	47	3.463649	4.925523	chr13	42818074	42819653	LTR|ERVL-MaLR|THE1B-int	-	chr13	42810365	42814422	MSTRG.14767.1	-	42810365,42812391	42811842,42814422	0.936170
SK_MEL_5_nuclear_fraction	chr13	45378434	45378476	45378434	+	High_confidence	3	4	13	0.958031	3.180833	chr13	45378076	45378674	LTR|ERV1|HERVE-int	-	chr13	45378529	45390879	TPT1-AS1|ENST00000520585.5	+	45378529,45379194,45379898,45383090,45383759,45389734,45390757	45378671,45379335,45380001,45383235,45383838,45389820,45390879	0.692308
SK_MEL_5_nuclear_fraction	chr3	111984434	111984459	111984434	+	RAMPAGE_only	2	2	7	0.515863	2.584963	chr3	111984421	111984560	LINE|L2|L2b	-	chr3	111979017	111991976	MSTRG.40402.2	+	111979017,111981783,111986913,111991376	111979203,111986375,111987051,111991976	0.857143
SK_MEL_5_nuclear_fraction	chr19	40592457	40592483	40592482	+	High_confidence	6	6	22	1.621282	4.106603	chr19	40592448	40592576	SINE|Alu|AluSx	-	chr19	40592238	40627720	MSTRG.28837.1	+	40592238,40599196,40599420,40600067,40605034,40605404,40606232,40606403,40607364,40608219,40608483,40609745,40610531,40611151,40611858,40612072,40613064,40613403,40613915,40614314,40619346,40622400,40622949,40623603,40623935,40625856,40626974,40627704	40593181,40599255,40599556,40600177,40605226,40605831,40606307,40606526,40607529,40608369,40609661,40609871,40610657,40611394,40611984,40612192,40613196,40613529,40614038,40614446,40619493,40622667,40623021,40623732,40624082,40626009,40627355,40627720	0.954545
SK_MEL_5	chr7	22832139	22832165	22832164	-	RAMPAGE_only	10	10	25	0.994284	3.621176	chr7	22832142	22832425	SINE|Alu|AluJr4	-	chr7	22812631	22822852	TOMM7|NM_019059.3	-	22812631,22817999,22822676	22813185,22818048,22822852	0.920000
SK_MEL_5	chr1	230113860	230113866	230113862	-	High_confidence	4	7	15	0.596571	2.549255	chr1	230113847	230113895	SINE|MIR|MIR3	+	chr1	230113228	230113854	STRG.9819.1	-	230113228	230113854	0.866667
SK_MEL_5	chr3	134485443	134485490	134485470	-	High_confidence	13	14	95	3.778280	5.210925	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.968421
SK_MEL_5	chr13	64075713	64075769	64075713	-	High_confidence	11	11	97	3.857823	4.761745	chr13	64074921	64075752	LTR|ERV1|MER52A	-	chr13	63986370	64076011	LINC00355|ENST00000456627.1	-	63986370,63990095,64002384,64003347,64034346,64075241	63987039,63990200,64002409,64003465,64034537,64076011	0.907216
SK_MEL_5	chr1	196933710	196933725	196933724	-	High_confidence	20	21	87	3.460109	5.298431	chr1	196933509	196934428	LTR|ERV1|LTR12C	+	chr1	196909565	196933713	STRG.8102.1	-	196909565,196922894,196930393,196933456	196910148,196923011,196930496,196933713	0.643678
SK_MEL_5	chr19	35164187	35164212	35164203	+	High_confidence	7	7	22	0.874970	2.657091	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	1.000000
SK_MEL_5	chr5	50799722	50799729	50799728	+	High_confidence	8	8	18	0.715885	3.572431	chr5	50799661	50800035	LTR|ERVL-MaLR|MLT1A0	+	chr5	50799803	50842293	STRG.35440.6	+	50799803,50815431,50821212,50822334,50824907,50826754,50827943,50828311,50829891,50832780,50833978,50834930,50841965	50799958,50815524,50821338,50822400,50824975,50826803,50828056,50828384,50829961,50832854,50834048,50835015,50842293	1.000000
SK_MEL_5	chr9	39810083	39810118	39810117	-	High_confidence	12	14	33	1.312455	3.929229	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39777349	39810097	GLIDR|ENST00000638724.1	-	39777349,39778893,39809485,39809730	39778566,39778944,39809615,39810097	0.727273
SK_MEL_5	chr4	44046402	44046429	44046403	-	RAMPAGE_only	6	8	14	0.556799	3.026987	chr4	44039793	44047197	LINE|L1|L1MA2	+	chr4	43980005	43981620	AC110799.1|ENST00000509098.1	-	43980005,43981597	43980431,43981620	0.500000
SK_MEL_5	chr4	14888179	14888180	14888179	-	High_confidence	159	167	176	6.999761	6.509557	chr4	14888020	14888389	LTR|ERVL-MaLR|THE1A	-	chr4	14470464	14888169	LINC00504|NR_126435.1	-	14470464,14477346,14572146,14614279,14700742,14859542,14888058	14474563,14477458,14572246,14614416,14700781,14859616,14888169	0.511364
SK_MEL_5	chr1	94271071	94271075	94271074	-	High_confidence	8	12	19	0.755656	3.169925	chr1	94270887	94271439	LTR|ERVL-MaLR|MLT1F2	-	chr1	94171948	94271026	STRG.4560.2	-	94171948,94177611,94177851,94179724,94184150,94184871,94185341,94186498,94188836,94189215,94189925,94201719,94202543,94202917,94203099,94203929,94205060,94205634,94208831,94209253,94220257,94231406,94270958	94174749,94177720,94178167,94179957,94184288,94185060,94185481,94186597,94188941,94189352,94190083,94201857,94202732,94202998,94203210,94203994,94205198,94205683,94208904,94209350,94220392,94231643,94271026	0.947368
SK_MEL_5	chr3	185689870	185689884	185689883	-	High_confidence	13	13	28	1.113598	4.162295	chr3	185689686	185689988	SINE|Alu|AluYa5	+	chr3	185649402	185689238	IGF2BP2|ENST00000494906.1	-	185649402,185652093,185657285,185658340,185675295,185675790,185687056,185689107	185649534,185652168,185657402,185658409,185675431,185675913,185687191,185689238	0.642857
SK_MEL_5	chr2	26268570	26268589	26268588	+	RAMPAGE_only	5	5	11	0.437485	2.721928	chr2	26268173	26268864	LINE|L1|L1MD3	+	chr2	26261020	26290464	HADHB|ENST00000545822.2	+	26261020,26263379,26269952,26273650,26277072,26278613,26279134,26279993,26282844,26283003,26284116,26284882,26285406,26289917	26261063,26263479,26269997,26273750,26277160,26278801,26279315,26280115,26282924,26283051,26284204,26284957,26285571,26290464	0.818182
SK_MEL_5	chr8	85839704	85839705	85839704	+	High_confidence	264	269	343	13.641579	6.562825	chr8	85839524	85839864	LTR|ERVL-MaLR|THE1B	+	chr8	85839704	85908613	AC100801.1|ENST00000517368.1	+	85839704,85885934,85889578,85908312	85839785,85885994,85889653,85908613	0.798834
SK_MEL_5	chrX	89264855	89264856	89264855	+	High_confidence	4	6	6	0.238628	2.584963	chrX	89264431	89265111	LTR|ERV1|MER50B	+	chrX	89264867	89367594	STRG.117794.1	+	89264867,89367440	89265056,89367594	0.500000
SK_MEL_5	chrX	135893611	135893722	135893714	+	High_confidence	52	61	257	10.221241	5.549233	chrX	135893573	135893804	LTR|ERVL|LTR41	-	chrX	135893633	135913061	SAGE1|NM_018666.2	+	135893633,135896242,135901558,135904476,135905251,135906023,135906410,135906925,135907312,135907700,135908088,135908476,135908863,135909638,135910029,135910414,135911191,135911578,135912320,135912797	135893800,135896329,135901691,135904569,135905392,135906164,135906551,135907066,135907453,135907841,135908229,135908617,135909004,135909779,135910170,135910555,135911332,135911953,135912414,135913061	0.968872
SK_MEL_5	chr21	44872591	44872599	44872598	-	High_confidence	5	5	11	0.437485	2.845351	chr21	44872536	44872598	LINE|L2|L2	+	chr21	44855237	44873032	PTTG1IP|ENST00000494690.5	-	44855237,44856192,44861162,44865394,44865570,44872853	44855256,44856364,44861271,44865447,44865650,44873032	0.909091
SK_MEL_5	chr13	60410080	60410081	60410080	+	High_confidence	978	1031	1059	42.117878	7.069222	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60410064	60573870	STRG.82991.6	+	60410064,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573612	60410164,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573870	0.927290
SK_MEL_5	chr3	160769140	160769152	160769140	+	RAMPAGE_only	3	3	10	0.397714	2.921928	chr3	160768901	160769260	LTR|ERVL-MaLR|MLT1L	-	chr3	160756207	161078907	PPM1L|ENST00000498165.5	+	160756207,160961735,161065402,161068810	160756707,160961910,161065564,161078907	0.700000
SK_MEL_5	chr8	53945315	53945331	53945319	+	High_confidence	5	5	14	0.556799	3.182006	chr8	53944745	53945626	LINE|L1|L1MB7	+	chr8	53945324	53958697	RGS20|ENST00000517405.1	+	53945324,53946664,53954075,53958269	53945370,53946748,53954310,53958697	0.857143
SK_MEL_5	chr6	2990742	2990743	2990742	-	RAMPAGE_only	8	9	12	0.477256	2.550341	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.916667
SK_MEL_5	chr14	102235451	102235481	102235458	-	High_confidence	224	233	720	28.635384	6.875401	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.812500
SK_MEL_5	chr6	73697839	73697858	73697857	-	High_confidence	3	3	11	0.437485	2.921928	chr6	73697648	73697989	LTR|ERVL-MaLR|MLT1J2	-	chr6	73691299	73697851	STRG.43802.2	-	73691299,73697683	73695575,73697851	0.636364
SK_MEL_5	chr12	28825947	28825962	28825961	-	High_confidence	217	433	702	27.919500	5.536974	chr12	28825676	28826170	LTR|ERVL|MLT2B3	-	chr12	28821974	28825831	AC022081.1|ENST00000537327.1	-	28821974,28825697	28822273,28825831	0.991453
SK_MEL_5	chr7	94022801	94022803	94022801	+	High_confidence	14	20	25	0.994284	4.323856	chr7	94022613	94022990	LTR|ERVL-MaLR|THE1C	+	chr7	94022832	94064723	AC003092.1|ENST00000415536.5	+	94022832,94061455,94061768,94064425	94022907,94061625,94061864,94064723	0.720000
SK_MEL_5	chr4	22339677	22339678	22339677	-	High_confidence	187	190	263	10.459870	6.778541	chr4	22339382	22339971	LTR|ERVL|LTR66	-	chr4	22327353	22339666	LOC100505912|NR_037877.1	-	22327353,22329856,22335040,22339579	22327889,22330004,22335167,22339666	0.752852
SK_MEL_5	chr17	59619888	59619923	59619904	+	High_confidence	1817	1986	10179	404.832746	5.835243	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.959721
SK_MEL_5	chr12	40738943	40738977	40738976	-	High_confidence	10	10	19	0.755656	3.239098	chr12	40738268	40738986	LINE|L1|L1ME3Cz	+	chr12	40737840	40738583	STRG.76954.1	-	40737840	40738583	0.894737
SK_MEL_5	chrX	115647991	115648001	115647991	+	RAMPAGE_only	3	5	8	0.318171	3.000000	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	1.000000
SK_MEL_5	chr7	30563894	30563905	30563894	-	High_confidence	4	5	14	0.556799	3.664498	chr7	30563654	30564076	LTR|ERVL-MaLR|MLT1C	-	chr7	30516974	30563998	STRG.49085.2	-	30516974,30524366,30550635,30552099,30561465	30517498,30524486,30550781,30552179,30563998	0.928571
SK_MEL_5	chr5	136466649	136466709	136466676	+	High_confidence	57	60	109	4.335079	5.608371	chr5	136466574	136466873	SINE|Alu|AluY	-	chr5	136466676	136509028	AC112178.1|ENST00000511165.5	+	136466676,136504599,136508655	136466885,136504693,136509028	0.504587
SK_MEL_5	chr5	75336467	75336527	75336514	+	High_confidence	9	9	51	2.028340	4.519315	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.882353
SK_MEL_5	chr12	64439290	64439315	64439314	+	RAMPAGE_only	5	5	15	0.596571	3.323231	chr12	64439324	64439679	DNA|hAT-Charlie|Charlie4a	+	chr12	64404372	64448684	XPOT|NM_007235.4	+	64404372,64409961,64414906,64416697,64418045,64418875,64420069,64420352,64421234,64423004,64423181,64424598,64425037,64425337,64425814,64428050,64430048,64431537,64433413,64434506,64434793,64435626,64439243,64445074,64448104	64404804,64410095,64414989,64416754,64418115,64419094,64420254,64420521,64421471,64423043,64423244,64424723,64425182,64425457,64425909,64428120,64430287,64431823,64433603,64434623,64434909,64435674,64439315,64445131,64448684	1.000000
SK_MEL_5	chr2	37200802	37200803	37200802	+	RAMPAGE_only	25	30	30	1.193141	3.469577	chr2	37200552	37200890	SINE|Alu|AluJo	+	chr2	37231630	37249160	NDUFAF7|NM_144736.4	+	37231630,37232105,37236095,37237756,37241577,37242634,37243862,37246051,37247455,37248134	37231760,37232266,37236176,37237867,37241791,37242693,37243973,37246195,37247629,37249160	0.966667
SK_MEL_5	chr15	55270756	55270757	55270756	-	High_confidence	12	12	12	0.477256	3.084963	chr15	55270754	55271222	LINE|L2|L2	+	chr15	55223915	55270874	RAB27A|ENST00000567380.5	-	55223915,55228608,55230400,55234781,55270164,55270755	55224012,55228712,55230486,55234956,55270284,55270874	0.666667
SK_MEL_5	chr7	22818346	22818381	22818359	-	High_confidence	885	886	2454	97.598935	5.609457	chr7	22818277	22818576	SINE|Alu|AluSz	-	chr7	22812970	22818335	TOMM7|ENST00000483581.1	-	22812970,22817999	22813185,22818335	0.981255
SK_MEL_5	chr7	6590246	6590263	6590262	+	High_confidence	3	3	11	0.437485	2.921928	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.909091
SK_MEL_5	chr6	63563455	63563459	63563458	+	RAMPAGE_only	19	20	33	1.312455	3.965018	chr6	63563031	63563704	LINE|L2|L2a	+	chr6	63572011	63583587	AL135905.2|ENST00000370651.6	+	63572011,63576435,63578436,63578897,63579256,63580056	63572719,63576985,63578529,63579028,63579331,63583587	0.969697
SK_MEL_5	chr11	38337190	38337217	38337216	-	High_confidence	41	46	242	9.624671	6.205464	chr11	38337000	38337314	SINE|Alu|AluY	+	chr11	38277218	38337124	STRG.71217.1	-	38277218,38325174,38336836	38278075,38325269,38337124	0.830579
SK_MEL_5	chr15	80059915	80059933	80059918	+	High_confidence	298	326	647	25.732075	5.470050	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.975270
SK_MEL_5	chr8	126832334	126832342	126832334	-	High_confidence	10	13	34	1.352226	3.959094	chr8	126832167	126832531	LTR|ERVL-MaLR|THE1B	-	chr8	126831615	126832322	STRG.59168.1	-	126831615	126832322	0.941176
SK_MEL_5	chr20	35307069	35307091	35307090	-	High_confidence	15	16	30	1.193141	3.940760	chr20	35306926	35307046	SINE|MIR|MIR3	-	chr20	35302565	35307082	UQCC1|ENST00000472559.5	-	35302565,35306665	35304069,35307082	0.933333
SK_MEL_5	chrX	126065524	126065555	126065554	-	RAMPAGE_only	9	12	33	1.312455	4.006071	chrX	126065403	126066703	LTR|ERV1|LTR2752	+	chrX	125985298	126059858	STRG.118953.2	-	125985298,125994782,126059788	125985595,125994851,126059858	0.818182
SK_MEL_5	chr2	9114922	9114925	9114922	+	High_confidence	20	22	32	1.272684	4.538910	chr2	9114748	9115100	LTR|ERVL-MaLR|THE1B	+	chr2	9115196	9116884	AC093904.3|ENST00000492300.1	+	9115196,9116572	9115252,9116884	0.843750
SK_MEL_5	chr9	33068829	33068860	33068832	-	RAMPAGE_only	3	4	13	0.517028	3.084963	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.923077
SK_MEL_5	chr22	39021125	39021151	39021125	+	High_confidence	19	19	74	2.943081	5.050075	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.945946
SK_MEL_5	chr1	225473571	225473572	225473571	-	RAMPAGE_only	60	60	63	2.505596	5.131402	chr1	225472522	225473899	LTR|ERV1|LTR12C	+	chr1	225445871	225465283	STRG.9521.2	-	225445871,225452131,225461540,225462393,225465222	225450678,225452277,225461729,225462493,225465283	0.666667
SK_MEL_5	chr2	74917992	74918071	74918040	+	High_confidence	44	44	129	5.130506	6.136081	chr2	74917679	74918502	LINE|L2|L2a	-	chr2	74918147	74942670	STRG.13871.2	+	74918147,74931417,74932660,74938307	74918459,74931536,74932790,74942670	0.860465
SK_MEL_5	chr9	20658321	20658349	20658338	+	High_confidence	68	85	282	11.215526	5.885917	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658325	20674134	STRG.60849.14	+	20658325,20673619	20658826,20674134	0.716312
SK_MEL_5	chrX	115209429	115209457	115209434	+	High_confidence	76	90	235	9.346271	5.700820	chrX	115209252	115209596	LTR|ERVL-MaLR|THE1B	+	chrX	115209442	115307564	STRG.118462.1	+	115209442,115301991,115303299,115306204	115209513,115302123,115303418,115307564	0.834043
SK_MEL_5	chr13	83496721	83496755	83496721	+	High_confidence	600	756	1144	45.498444	7.222002	chr13	83496525	83496860	LTR|ERVL-MaLR|THE1A	+	chr13	83496667	83520809	STRG.83669.2	+	83496667,83497295,83498677,83509459,83516112	83496804,83497492,83501141,83509545,83520809	0.916084
SK_MEL_5	chr8	57978399	57978441	57978399	+	High_confidence	25	26	78	3.102167	4.607959	chr8	57978204	57978556	LTR|ERVL-MaLR|THE1A	+	chr8	57978357	57984126	LINC01602|ENST00000522992.1	+	57978357,57980893,57982265	57978484,57981014,57984126	0.961538
SK_MEL_5	chr4	188660959	188660990	188660959	+	High_confidence	6	6	15	0.596571	3.189898	chr4	188660770	188661102	LTR|ERVL|LTR16A	-	chr4	188660915	188665433	STRG.33355.2	+	188660915,188662493	188661899,188665433	1.000000
SK_MEL_5	chr7	87040214	87040223	87040214	-	High_confidence	13	20	31	1.232912	4.260333	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86877165	87040208	STRG.51393.2	-	86877165,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86880530,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040208	1.000000
SK_MEL_5	chr3	195356183	195356215	195356211	-	High_confidence	29	36	97	3.857823	4.290111	chr3	195355936	195357733	LINE|L1|L1M1	+	chr3	195333081	195356212	ACAP2|ENST00000423531.3	-	195333081,195336931,195342470,195345258,195356067	195333123,195336976,195342654,195345317,195356212	0.896907
SK_MEL_5	chr1	222064772	222064773	222064772	-	High_confidence	95	105	105	4.175994	5.021442	chr1	222064600	222064953	LTR|ERVL-MaLR|THE1B	-	chr1	222041704	222064763	LINC01705|ENST00000438158.1	-	222041704,222058413,222064684	222041922,222058678,222064763	0.847619
SK_MEL_5	chr9	138173037	138173099	138173093	-	High_confidence	12	13	114	4.533936	5.789175	chr9	138172875	138173155	SINE|Alu|AluSx1	+	chr9	138163089	138173189	STRG.65285.1	-	138163089,138167715,138172749	138164048,138167813,138173189	0.780702
SK_MEL_5	chr8	125228832	125228910	125228866	+	RAMPAGE_only	11	11	36	1.431769	4.593429	chr8	125228776	125228977	SINE|MIR|MIRb	-	chr8	125124143	125367118	NSMCE2|ENST00000517315.1	+	125124143,125126965,125151170,125182102,125357218,125357711,125366767	125124217,125127067,125151277,125182256,125357319,125357818,125367118	0.722222
SK_MEL_5	chr13	70249679	70249680	70249679	+	High_confidence	66	74	75	2.982853	5.256414	chr13	70249527	70250006	LTR|ERVL|MER70B	+	chr13	70249714	70258353	STRG.83185.1	+	70249714,70253329,70253964,70254928	70250396,70253386,70254114,70258353	0.960000
SK_MEL_5	chr1	218416887	218416888	218416887	+	RAMPAGE_only	7	8	8	0.318171	2.521641	chr1	218416708	218417044	LTR|ERVL-MaLR|THE1B	+	chr1	218434125	218442141	TGFB2|ENST00000479322.1	+	218434125,218434337,218435969,218437342,218441203	218434252,218434448,218436147,218437496,218442141	0.875000
SK_MEL_5	chr1	1655395	1655445	1655444	-	RAMPAGE_only	3	4	12	0.477256	3.084963	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.500000
SK_MEL_5	chr3	53197287	53197294	53197287	+	RAMPAGE_only	16	21	33	1.312455	3.648090	chr3	53197093	53197442	LTR|ERVL-MaLR|THE1C	+	chr3	53200965	53229215	STRG.22712.3	+	53200965,53227951	53201015,53229215	0.818182
SK_MEL_5	chr10	84279967	84279968	84279967	+	High_confidence	57	59	72	2.863538	4.772230	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279979	84294659	LINC00858|ENST00000415469.5	+	84279979,84288223,84288593,84288974,84291406,84293245	84280065,84288420,84288780,84289044,84292137,84294659	0.597222
SK_MEL_5	chr13	113815608	113815609	113815608	+	High_confidence	11	11	12	0.477256	2.732159	chr13	113815414	113815766	LTR|ERVL-MaLR|THE1A	+	chr13	113815629	113845744	GAS6-AS1|ENST00000458001.2	+	113815629,113833491,113834577,113838076,113839083	113815691,113833579,113834764,113838247,113845744	0.583333
SK_MEL_5	chr11	74070871	74070947	74070873	-	High_confidence	16	23	75	2.982853	5.405160	chr11	74070756	74071175	LINE|L2|L2c	+	chr11	74012717	74070869	STRG.72974.5	-	74012717,74028286,74033350,74037477,74042053,74048204,74049336,74054606,74057405,74070505	74013525,74028398,74034278,74037698,74042218,74048338,74049542,74054671,74057544,74070869	0.973333
SK_MEL_5	chr4	44016697	44016773	44016697	+	High_confidence	168	168	832	33.089777	6.411939	chr4	44016424	44016724	LTR|ERV1|MER51A	-	chr4	44016601	44021893	STRG.29891.3	+	44016601,44019754	44017062,44021893	0.955529
SK_MEL_5	chr20	57601176	57601224	57601190	-	High_confidence	22	22	51	2.028340	4.443536	chr20	57600987	57601427	LINE|L2|L2b	+	chr20	57599694	57601200	AL035541.1|ENST00000424850.1	-	57599694,57600911	57600228,57601200	0.901961
SK_MEL_5	chr4	173844616	173844619	173844616	+	High_confidence	19	20	31	1.232912	3.781147	chr4	173844438	173844792	LTR|ERVL-MaLR|THE1B	+	chr4	173844628	173856469	STRG.32889.1	+	173844628,173856283	173844709,173856469	0.580645
SK_MEL_5	chr1	174413927	174413973	174413927	+	RAMPAGE_only	5	5	20	0.795427	3.884184	chr1	174410275	174413996	LINE|L1|L1PA16	-	chr1	174159516	174958182	RABGAP1L|ENST00000251507.8	+	174159516,174219124,174220971,174231144,174241482,174250474,174252479,174272413,174275832,174278612,174304985,174370978,174393994,174637374,174683521,174699524,174702112,174752312,174811831,174957456,174957890	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145,174637488,174683596,174699650,174702256,174752354,174811960,174957549,174958182	0.750000
SK_MEL_5	chr3	32931451	32931454	32931451	+	High_confidence	25	30	38	1.511312	4.010571	chr3	32931292	32931628	LTR|ERVL-MaLR|THE1B	+	chr3	32931521	32935693	STRG.21504.1	+	32931521,32935384	32931544,32935693	0.815789
SK_MEL_5	chr7	22725921	22726014	22726013	+	High_confidence	14	15	84	3.340795	4.722469	chr7	22725923	22726198	LTR|Gypsy?|LTR88b	+	chr7	22725883	22732002	IL6|ENST00000404625.5	+	22725883,22727178,22727443,22728692,22729513,22731405	22726258,22727281,22727634,22728806,22729660,22732002	0.892857
SK_MEL_5	chr10	17216310	17216311	17216310	-	High_confidence	14	14	14	0.556799	3.182006	chr10	17216274	17216354	LTR|ERV1|HERVIP10FH-int	+	chr10	17214120	17216460	STRG.65871.1	-	17214120,17216166	17215364,17216460	1.000000
SK_MEL_5	chr20	46684480	46684488	46684487	-	High_confidence	11	11	23	0.914741	3.708132	chr20	46684315	46684677	LTR|ERVL-MaLR|THE1C	-	chr20	46557822	46684485	SLC13A3|NM_001193340.1	-	46557822,46563413,46566228,46575572,46583571,46589159,46592403,46596156,46599970,46610445,46613459,46670042,46684395	46560198,46563551,46566390,46575685,46583669,46589255,46592529,46596342,46600037,46610609,46613725,46670139,46684485	0.565217
SK_MEL_5	chr19	39480283	39480291	39480283	+	High_confidence	15	17	29	1.153370	3.624519	chr19	39479461	39480441	LTR|ERVK|LTR5_Hs	+	chr19	39480411	39490888	TIMM50|ENST00000544017.5	+	39480411,39481882,39482884,39483134,39485543,39485687,39486186,39486396,39488060,39488538,39489718	39480961,39482033,39482916,39483156,39485602,39485807,39486291,39486495,39488217,39488645,39490888	0.965517
SK_MEL_5	chr8	83403990	83404007	83403992	+	High_confidence	3	5	14	0.556799	3.026987	chr8	83402757	83404051	LTR|ERV1|LTR12C	+	chr8	83403757	83408900	LINC01419|NR_122034.1	+	83403757,83407691	83404069,83408900	0.571429
SK_MEL_5	chr1	226182458	226182469	226182458	-	RAMPAGE_only	7	8	15	0.596571	3.373557	chr1	226182334	226182625	SINE|Alu|AluSz	+	chr1	226144678	226186722	ACBD3|NM_022735.3	-	226144678,226152334,226154646,226159183,226161530,226164788,226165858,226186389	226146821,226152619,226154833,226159358,226161689,226164929,226166000,226186722	1.000000
SK_MEL_5	chr19	48270914	48270926	48270914	+	High_confidence	6	8	14	0.556799	2.777363	chr19	48270796	48271084	SINE|Alu|AluYc	+	chr19	48271055	48287070	ZNF114|ENST00000600687.5	+	48271055,48271286,48279730,48282370,48285760	48271119,48271449,48279808,48282497,48287070	0.500000
SK_MEL_5	chr8	123251169	123251180	123251179	+	High_confidence	95	96	213	8.471301	5.498603	chr8	123251043	123251381	LTR|ERVL-MaLR|MSTA	+	chr8	123251154	123256204	STRG.58930.1	+	123251154,123255837	123251299,123256204	0.938967
SK_MEL_5	chr6	84105418	84105421	84105420	-	High_confidence	15	29	38	1.511312	4.701746	chr6	84105245	84105601	LTR|ERVL-MaLR|THE1B	-	chr6	84093021	84105403	STRG.44144.1	-	84093021,84101488,84105326	84093483,84101587,84105403	0.710526
SK_MEL_5	chr7	47795275	47795305	47795296	+	High_confidence	4	4	10	0.397714	2.921928	chr7	47795165	47795519	LTR|ERVL-MaLR|THE1A	+	chr7	47795290	47819847	C7orf69|NM_025031.2	+	47795290,47818025,47819506	47795443,47818195,47819847	0.900000
SK_MEL_5	chr13	39588021	39588081	39588080	-	RAMPAGE_only	10	10	50	1.988568	5.150324	chr13	39587600	39588086	LTR|ERVL|LTR33A	-	chr13	39342891	39603171	LHFPL6|ENST00000379589.3	-	39342891,39378427,39600831,39602882	39344054,39378526,39601390,39603171	0.780000
SK_MEL_5	chr1	9451217	9451218	9451217	-	High_confidence	229	242	301	11.971182	4.266525	chr1	9451056	9451440	LTR|ERVL-MaLR|THE1B	-	chr1	9444810	9451208	STRG.547.1	-	9444810,9450065,9450346	9445041,9450250,9451208	0.933555
SK_MEL_5	chr2	145023656	145023680	145023679	+	High_confidence	10	13	42	1.670397	4.735362	chr2	145023667	145023901	SINE|MIR|MIR	+	chr2	145023252	145073025	TEX41|ENST00000628167.2	+	145023252,145044365,145070819,145072523	145023273,145044463,145070941,145073025	0.547619
SK_MEL_5	chr6	125843211	125843232	125843211	+	RAMPAGE_only	8	8	16	0.636342	3.625000	chr6	125843025	125843465	LTR|ERVL-MaLR|MLT1D	+	chr6	125815217	125855590	NCOA7|ENST00000487635.1	+	125815217,125855019	125815404,125855590	0.812500
SK_MEL_5	chr1	95042451	95042545	95042538	-	High_confidence	20	24	110	4.374850	5.308225	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94982795	95042451	STRG.4630.11	-	94982795,95027128,95042331	94983306,95027260,95042451	0.890909
SK_MEL_5	chr8	75324430	75324494	75324493	-	High_confidence	3	3	19	0.755656	3.572431	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.789474
SK_MEL_5	chr7	151468734	151468755	151468734	-	RAMPAGE_only	3	3	9	0.357942	2.725481	chr7	151468185	151468817	LINE|L2|L2a	+	chr7	151466011	151519924	RHEB|ENST00000262187.9	-	151466011,151470570,151471393,151471548,151477332,151484736,151490942,151519459	151467211,151470652,151471441,151471605,151477415,151484804,151491014,151519924	1.000000
SK_MEL_5	chr13	113187420	113187472	113187444	-	High_confidence	13	13	51	2.028340	4.337581	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.901961
SK_MEL_5	chrX	72305913	72305914	72305913	-	High_confidence	110	132	136	5.408906	5.211283	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	0.948529
SK_MEL_5	chr15	42404759	42404873	42404759	+	High_confidence	2020	2196	11041	439.115665	7.848762	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404778	42412317	CAPN3|NM_173090.1	+	42404778,42405925,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42405943,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412317	0.872928
SK_MEL_5	chr14	63101927	63101973	63101936	-	High_confidence	14	16	70	2.783996	5.154074	chr14	63101880	63102189	SINE|Alu|AluY	+	chr14	62699585	63101955	STRG.86659.1	-	62699585,62779727,62802328,62849652,62950132,62980871,62987071,63001330,63006365,63016830,63101799	62708455,62779924,62802581,62849852,62950559,62981264,62987187,63001459,63006472,63016954,63101955	0.714286
SK_MEL_5	chr9	15852047	15852080	15852047	+	RAMPAGE_only	9	11	26	1.034056	3.086049	chr9	15851616	15856154	LINE|L1|L1MB5	-	chr9	15850225	15979906	STRG.60683.3	+	15850225,15920269,15971608	15850311,15920422,15979906	0.692308
SK_MEL_5	chr17	79953146	79953198	79953171	-	RAMPAGE_only	26	26	78	3.102167	4.628987	chr17	79953109	79953222	SINE|MIR|MIRc	+	chr17	79932342	80035848	TBC1D16|ENST00000310924.6	-	79932342,79942059,79944907,79947644,79948871,79949716,79950410,79951449,79952656,80010159,80013366,80035794	79941107,79942206,79945087,79947831,79949006,79949865,79950578,79951597,79952818,80010757,80013609,80035848	0.602564
SK_MEL_5	chr14	24596043	24596080	24596079	+	High_confidence	3	3	11	0.437485	2.845351	chr14	24593738	24596300	LINE|L1|L1PB1	-	chr14	24595774	24657774	STRG.85022.2	+	24595774,24622967,24628357,24634295,24639902,24643264,24657524	24596002,24623470,24628423,24634577,24640628,24654707,24657774	0.818182
SK_MEL_5	chr2	201115959	201116014	201116013	+	High_confidence	5	5	25	0.994284	3.918296	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.800000
SK_MEL_5	chr17	81384544	81384591	81384590	-	High_confidence	4	7	19	0.755656	2.792586	chr17	81384518	81384822	SINE|Alu|AluSx1	-	chr17	81376021	81385174	STRG.101967.8	-	81376021,81379721,81380484,81381876	81376173,81379881,81380584,81385174	1.000000
SK_MEL_5	chr18	14848370	14848405	14848370	+	High_confidence	3	3	15	0.596571	3.235926	chr18	14848312	14848637	LINE|L2|L2a	+	chr18	14847597	14854862	STRG.102677.4	+	14847597,14848715,14850213,14851508,14853808,14854191	14848140,14848929,14850382,14852420,14853943,14854862	0.800000
SK_MEL_5	chr3	169812897	169812904	169812903	-	High_confidence	6	6	10	0.397714	2.641604	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.900000
SK_MEL_5	chr7	18129091	18129117	18129091	+	RAMPAGE_only	2	3	9	0.357942	2.500000	chr7	18129064	18129260	SINE|MIR|MIRc	+	chr7	18086971	18749061	STRG.48341.1	+	18086971,18162228,18496261,18585280,18590335,18591515,18593907,18629349,18634626,18644670,18647784,18648465,18666212,18727579,18749004	18087213,18162349,18496324,18585522,18590486,18591642,18594029,18629481,18634742,18644793,18647998,18648683,18666476,18727757,18749061	0.555556
SK_MEL_5	chr6	137693112	137693132	137693131	+	High_confidence	10	10	36	1.431769	4.197160	chr6	137691890	137693871	LTR|ERVL|ERVL-int	+	chr6	137693077	137700386	STRG.46078.1	+	137693077,137698676	137693227,137700386	0.861111
SK_MEL_5	chr7	27652687	27652750	27652692	-	RAMPAGE_only	13	18	71	2.823767	4.809231	chr7	27652537	27652846	LTR|ERVL-MaLR|MLT1A0	-	chr7	27531253	27647756	HIBADH|ENST00000425715.1	-	27531253,27538340,27542966,27629370,27632335,27647672	27531348,27538417,27543100,27629492,27632441,27647756	0.788732
SK_MEL_5	chr22	39320306	39320364	39320334	-	High_confidence	6	6	19	0.755656	3.826875	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	1.000000
SK_MEL_5	chr15	92678192	92678213	92678212	-	RAMPAGE_only	98	114	471	18.732314	6.161614	chr15	92678051	92678466	LTR|ERVL-MaLR|MSTC	-	chr15	92619182	92668043	FAM174B|ENST00000557480.5	-	92619182,92630213,92667897	92619459,92630345,92668043	0.768577
SK_MEL_5	chr6	31053448	31053449	31053448	+	High_confidence	23	25	26	1.034056	3.269275	chr6	31053266	31053607	LTR|ERVL-MaLR|THE1A	+	chr6	31053449	31059890	HCG22|NR_003948.2	+	31053449,31054099,31055709,31059407	31053531,31054516,31056910,31059890	0.961538
SK_MEL_5	chr8	42542111	42542160	42542159	+	High_confidence	6	6	25	0.994284	3.827910	chr8	42542201	42542309	SINE|MIR|MIRb	+	chr8	42541795	42552997	SMIM19|NM_001135675.1	+	42541795,42546468,42548655,42552543	42542155,42546606,42548780,42552997	0.640000
SK_MEL_5	chr12	18046347	18046379	18046378	-	High_confidence	3	3	13	0.517028	2.653544	chr12	18046188	18046489	SINE|Alu|AluY	+	chr12	18045837	18046281	STRG.75981.1	-	18045837	18046281	0.769231
SK_MEL_5	chr14	58456122	58456162	58456122	+	RAMPAGE_only	3	4	17	0.676113	3.375000	chr14	58455704	58456407	LINE|L1|L1M4	-	chr14	58442705	58537219	KIAA0586|ENST00000538571.6	+	58442705,58443953,58448339,58450578,58453349,58456701,58457758,58458472,58459842,58460985,58465834,58467734,58470612,58472198,58474606,58477122,58482512,58487006,58487886,58488620,58490163,58492143,58498782,58508554,58512521,58537006	58442880,58444175,58448493,58450746,58453473,58456810,58457979,58458545,58460070,58461160,58466029,58467922,58470723,58472279,58474797,58477241,58482712,58487166,58488109,58488874,58490240,58492275,58498960,58508709,58512627,58537219	0.941176
SK_MEL_5	chr6	136993256	136993257	136993256	-	High_confidence	6	8	8	0.318171	2.500000	chr6	136993109	136993451	LTR|ERVL-MaLR|THE1A	-	chr6	136982164	136993234	NHEG1|ENST00000432330.5	-	136982164,136990053,136993173	136983153,136990360,136993234	0.750000
SK_MEL_5	chr10	88545429	88545492	88545491	-	High_confidence	434	452	1913	76.082625	7.253238	chr10	88545305	88545664	LTR|ERVL-MaLR|THE1B	-	chr10	88284958	88545543	STRG.67945.5	-	88284958,88314465,88362551,88545456	88285506,88314641,88362725,88545543	0.906952
SK_MEL_5	chr19	3062922	3062986	3062982	-	High_confidence	25	29	158	6.283876	5.419787	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	1.000000
SK_MEL_5	chr3	9986898	9986916	9986898	+	High_confidence	5	5	14	0.556799	3.392747	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.571429
SK_MEL_5	chr12	126772237	126772251	126772237	-	High_confidence	3	3	11	0.437485	3.027169	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126769944	126772225	STRG.80776.1	-	126769944,126772078	126770254,126772225	0.545455
SK_MEL_5	chr22	32232946	32233217	32233194	-	High_confidence	1454	1527	11245	447.229023	5.205351	chr22	32233138	32233397	LINE|L1|L1MA4	+	chr22	32212459	32233248	STRG.114246.3	-	32212459,32220919,32224266,32225654,32229193,32230967,32232898	32218725,32221022,32224482,32225823,32229344,32231075,32233248	0.983459
SK_MEL_5	chr7	54759973	54759976	54759973	-	High_confidence	8	8	16	0.636342	2.952820	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	1.000000
SK_MEL_5	chr7	99410039	99410057	99410056	+	RAMPAGE_only	10	11	28	1.113598	3.736007	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.964286
SK_MEL_5	chr7	107580458	107580476	107580458	+	High_confidence	4	4	12	0.477256	2.845351	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.833333
SK_MEL_5	chr19	27894276	27894311	27894310	-	RAMPAGE_only	3	3	12	0.477256	2.732159	chr19	27894101	27894479	LINE|L2|L2c	+	chr19	27849729	27889222	AC006504.2|ENST00000589471.1	-	27849729,27889104	27850069,27889222	0.750000
SK_MEL_5	chr8	93794820	93794824	93794823	+	High_confidence	20	27	41	1.630626	4.784143	chr8	93794713	93794824	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	1.000000
SK_MEL_5	chr18	73264433	73264434	73264433	-	High_confidence	8	8	10	0.397714	2.921928	chr18	73264307	73264608	SINE|Alu|AluY	+	chr18	73154415	73264445	STRG.103958.2	-	73154415,73159540,73200652,73255812,73264239	73155935,73161973,73200789,73255918,73264445	0.700000
SK_MEL_5	chr2	108189399	108189419	108189404	-	High_confidence	14	15	53	2.107882	4.926119	chr2	108189389	108189886	LTR|ERVK|LTR3B_	+	chr2	108167174	108189449	STRG.15339.2	-	108167174,108169497,108179153,108184457,108189361	108167769,108169586,108179281,108184682,108189449	0.830189
SK_MEL_5	chr4	49495020	49495075	49495044	-	High_confidence	34	36	128	5.090735	5.888780	chr4	49494957	49495361	LTR|ERV1|MER61C	+	chr4	49486932	49495058	STRG.30028.1	-	49486932,49488433,49494948	49487096,49488647,49495058	0.796875
SK_MEL_5	chr11	89191716	89191736	89191735	+	RAMPAGE_only	7	7	19	0.755656	4.058814	chr11	89191611	89191750	SINE|Alu|AluJo	+	chr11	89177871	89295759	TYR|NM_000372.4	+	89177871,89191201,89227822,89284772,89295142	89178772,89191418,89227970,89284954,89295759	0.894737
SK_MEL_5	chrX	125155015	125155016	125155015	-	High_confidence	84	85	90	3.579423	4.226440	chrX	125154598	125156024	LTR|ERV1|LTR12C	-	chrX	125154559	125154997	STRG.118946.1	-	125154559	125154997	0.855556
SK_MEL_5	chr13	102780934	102780938	102780937	+	High_confidence	16	20	37	1.471541	4.152172	chr13	102780772	102781113	LTR|ERVL-MaLR|THE1C	+	chr13	102780919	102783131	STRG.84284.1	+	102780919	102783131	0.945946
SK_MEL_5	chr1	212421382	212421407	212421406	+	RAMPAGE_only	3	3	9	0.357942	2.725481	chr1	212421055	212421571	LTR|ERV1|MER41D	+	chr1	212432886	212446379	NENF|NR_026598.1	+	212432886,212444338,212445829	212433120,212444442,212446379	0.666667
SK_MEL_5	chr7	95594302	95594303	95594302	-	RAMPAGE_only	5	5	8	0.318171	2.521641	chr7	95594230	95594384	SINE|MIR|MIRb	+	chr7	95583498	95596491	PDK4|ENST00000005178.5	-	95583498,95587009,95587417,95587726,95589639,95591987,95592510,95592759,95593698,95595022,95596163	95585781,95587123,95587528,95587825,95589716,95592065,95592597,95592944,95593770,95595164,95596491	0.625000
SK_MEL_5	chr2	78542027	78542065	78542038	-	High_confidence	132	140	287	11.414382	6.887035	chr2	78541256	78543178	LINE|L1|L1PBa1	+	chr2	78456125	78542065	STRG.14137.3	-	78456125,78485793,78541571	78456731,78485852,78542065	0.693380
SK_MEL_5	chr16	90092076	90092087	90092081	-	RAMPAGE_only	3	3	10	0.397714	2.921928	chr16	90091858	90092142	SINE|Alu|AluSx1	+	chr16	90061451	90075930	PRDM7|ENST00000564210.2	-	90061451,90061920,90062400,90069977,90074915,90075841	90061519,90062192,90062502,90070052,90075023,90075930	0.500000
SK_MEL_5	chr11	72793486	72793537	72793507	-	High_confidence	8	9	33	1.312455	4.195816	chr11	72793261	72793497	SINE|MIR|MIRb	-	chr11	72685068	72793599	ARAP1|ENST00000359373.9	-	72685068,72686041,72687438,72687687,72688454,72693324,72693691,72694979,72695386,72695541,72695717,72696548,72696982,72697322,72697597,72697910,72699004,72699416,72701648,72702904,72704151,72705804,72707174,72709869,72710384,72711020,72711429,72712195,72712437,72713175,72714151,72726619,72732514,72792874	72685681,72686191,72687502,72687738,72688537,72693470,72693805,72695097,72695455,72695628,72695865,72696654,72697195,72697486,72697649,72698106,72699107,72699552,72701783,72703079,72704334,72705890,72707374,72709976,72710587,72711141,72711499,72712339,72712568,72713243,72714321,72727172,72732597,72793599	0.909091
SK_MEL_5	chr19	49086481	49086547	49086546	+	High_confidence	5	6	23	0.914741	4.001823	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.608696
SK_MEL_5	chr7	111392899	111393036	111392899	-	High_confidence	302	308	1265	50.310779	7.660479	chr7	111392522	111393282	LTR|ERVL|MER21C	-	chr7	110663425	111392915	STRG.52819.3	-	110663425,110886592,110963499,111390570,111391837,111392801	110663721,110886695,110963565,111390694,111392019,111392915	0.523320
SK_MEL_5	chr5	160199150	160199156	160199150	+	High_confidence	24	27	61	2.426053	4.051910	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.967213
SK_MEL_5	chr12	22822215	22822219	22822218	+	RAMPAGE_only	17	17	38	1.511312	4.807009	chr12	22821744	22822707	LTR|ERVL|ERVL-B4-int	+	chr12	22861068	22871078	AC084816.1|ENST00000629078.1	+	22861068,22869320,22870425	22861224,22869413,22871078	0.500000
SK_MEL_5	chr6	113873339	113873392	113873391	-	High_confidence	3	3	13	0.517028	3.392747	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873351	LINC01268|ENST00000434296.2	-	113868012,113870668,113872993	113870343,113870734,113873351	0.692308
SK_MEL_5	chr2	159087982	159087987	159087986	+	High_confidence	35	38	74	2.943081	4.884561	chr2	159087724	159088170	LTR|ERVL-MaLR|MLT1C	+	chr2	159087989	159093073	STRG.16858.6	+	159087989,159089583	159088093,159093073	0.864865
SK_MEL_5	chr12	9568962	9568982	9568962	+	RAMPAGE_only	33	35	84	3.340795	4.454909	chr12	9568603	9569205	LTR|ERV1|HERVE-int	-	chr12	9570713	9576264	STRG.75601.4	+	9570713,9571460,9573002,9573313,9574846,9575642,9576117	9570892,9571573,9573093,9573534,9574949,9575717,9576264	1.000000
SK_MEL_5	chr22	45119516	45119517	45119516	-	RAMPAGE_only	9	9	11	0.437485	3.095795	chr22	45119357	45119708	LTR|ERVL-MaLR|THE1B	-	chr22	45112763	45112981	STRG.115232.1	-	45112763	45112981	0.545455
SK_MEL_5	chr7	9621804	9621814	9621813	+	RAMPAGE_only	7	7	16	0.636342	2.973557	chr7	9620612	9622009	LTR|ERV1|LTR12C	-	chr7	9737321	9769513	AC060834.2|ENST00000447999.1	+	9737321,9740953,9743246,9760555,9769232	9737483,9741018,9743302,9760609,9769513	0.562500
SK_MEL_5	chr4	188661028	188661082	188661028	+	High_confidence	101	102	249	9.903070	6.300881	chr4	188660770	188661102	LTR|ERVL|LTR16A	-	chr4	188660915	188665433	STRG.33355.2	+	188660915,188662493	188661899,188665433	0.987952
SK_MEL_5	chr17	60646054	60646059	60646058	+	High_confidence	7	7	15	0.596571	3.773557	chr17	60645871	60646103	SINE|Alu|AluJo	+	chr17	60645957	60664473	STRG.100253.4	+	60645957,60647891,60656598,60662994	60646164,60648082,60656841,60664473	0.866667
SK_MEL_5	chr7	46990959	46990978	46990977	+	RAMPAGE_only	4	4	11	0.437485	2.550341	chr7	46990863	46991217	LINE|L2|L2	-	chr7	46969715	47027481	AC004870.2|ENST00000423781.1	+	46969715,46972276,47026136,47027192	46969913,46972385,47026246,47027481	0.818182
SK_MEL_5	chr7	134212920	134213095	134213072	+	High_confidence	165	265	1549	61.605848	7.632723	chr7	134212936	134213132	LINE|L2|L2b	-	chr7	134212889	134264591	STRG.53613.4	+	134212889,134221778,134247555,134248950,134258256,134263844	134213154,134221918,134247644,134249076,134258405,134264591	0.703680
SK_MEL_5	chr21	38121472	38121492	38121491	+	High_confidence	193	194	573	22.788993	6.393117	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.942408
SK_MEL_5	chr10	130124745	130124765	130124761	-	High_confidence	15	17	40	1.590855	4.446439	chr10	130124761	130125072	LTR|ERVL-MaLR|THE1B	+	chr10	130119965	130124750	STRG.69462.1	-	130119965,130124227,130124689	130120253,130124319,130124750	0.750000
SK_MEL_5	chr13	55054044	55054136	55054135	+	High_confidence	11	12	53	2.107882	5.119153	chr13	55053630	55054427	LTR|ERV1|LTR17	+	chr13	55053828	55161490	STRG.82750.4	+	55053828,55062871,55106769,55160956	55054458,55063002,55106836,55161490	0.528302
SK_MEL_5	chr1	154975518	154975546	154975524	+	High_confidence	8	8	29	1.153370	3.922829	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.827586
SK_MEL_5	chr2	223587793	223587798	223587793	-	RAMPAGE_only	6	6	10	0.397714	2.846439	chr2	223587626	223587987	LTR|ERVL-MaLR|THE1B	-	chr2	223532968	223540048	STRG.19347.1	-	223532968,223535443,223538326,223539491	223535199,223535570,223538481,223540048	0.700000
SK_MEL_5	chr10	28896166	28896167	28896166	-	High_confidence	434	438	457	18.175515	5.251786	chr10	28895749	28897341	LTR|ERV1|LTR12C	-	chr10	28892452	28896150	STRG.66133.2	-	28892452	28896150	0.949672
SK_MEL_5	chr5	151772700	151772708	151772707	-	High_confidence	9	9	16	0.636342	2.606239	chr5	151772569	151772792	SINE|MIR|MIRb	-	chr5	151772426	151772635	STRG.39761.1	-	151772426	151772635	0.750000
SK_MEL_5	chr2	74506480	74506494	74506493	-	High_confidence	25	25	76	3.022624	4.332821	chr2	74506295	74506592	SINE|Alu|AluYh3	+	chr2	74505042	74507151	PCGF1|ENST00000465993.5	-	74505042,74505338,74505551,74505736,74506731,74507041	74505190,74505419,74505612,74505770,74506884,74507151	0.657895
SK_MEL_5	chr17	82076525	82076526	82076525	-	RAMPAGE_only	10	11	11	0.437485	3.121928	chr17	82076254	82076887	LINE|L1|L1MEc	-	chr17	81511345	81523847	ACTG1|ENST00000575994.5	-	81511345,81511902,81512231,81523641	81511626,81512142,81512360,81523847	0.909091
SK_MEL_5	chr16	30623968	30623969	30623968	-	High_confidence	306	310	313	12.448438	6.735282	chr16	30623844	30624281	LTR|ERVK|LTR3B_	-	chr16	30604617	30623948	ZNF689|ENST00000565440.5	-	30604617,30609524,30623739	30605447,30609638,30623948	0.549521
SK_MEL_5	chr2	45192665	45192669	45192665	-	High_confidence	44	51	68	2.704453	4.978121	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45168876	45192645	STRG.12367.1	-	45168876,45189120,45192139,45192580	45168877,45189249,45192285,45192645	0.691176
SK_MEL_5	chr8	75324586	75324659	75324606	-	High_confidence	8	8	29	1.153370	4.035582	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.551724
SK_MEL_5	chr7	118185398	118185434	118185433	+	RAMPAGE_only	18	18	59	2.346511	5.106805	chr7	118185243	118185494	SINE|Alu|AluJo	-	chr7	118184166	118188405	LSM8|ENST00000411938.1	+	118184166,118185646,118188277	118184280,118185694,118188405	0.779661
SK_MEL_5	chr8	47997447	47997454	47997447	+	RAMPAGE_only	15	15	31	1.232912	4.131300	chr8	47995253	47998768	LTR|ERV1|HERVFH21-int	-	chr8	48008399	48064708	UBE2V2|ENST00000523111.6	+	48008399,48043032,48049852,48060681	48008470,48043181,48049978,48064708	1.000000
SK_MEL_5	chr9	2732061	2732103	2732102	-	RAMPAGE_only	23	23	38	1.511312	4.306495	chr9	2731877	2732255	LTR|ERVL-MaLR|MLT1A1	-	chr9	2664967	2844118	STRG.60280.1	-	2664967,2667150,2667937,2720343,2777872,2804238,2807813,2810343,2811360,2812219,2820017,2823780,2824716,2827072,2828674,2829773,2830961,2831250,2833356,2834030,2837179,2838425,2844044	2665075,2667349,2668061,2720532,2777994,2804463,2807904,2810431,2811583,2812362,2820098,2823834,2824815,2827151,2828778,2829948,2831028,2831344,2833432,2834166,2837401,2838517,2844118	0.815789
SK_MEL_5	chr10	65570509	65570522	65570521	+	High_confidence	15	21	35	1.391998	4.300554	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.685714
SK_MEL_5	chr21	45593653	45593654	45593653	+	High_confidence	8	8	11	0.437485	2.913977	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	1.000000
SK_MEL_5	chr17	10291816	10291823	10291822	+	High_confidence	16	16	31	1.232912	4.211261	chr17	10291623	10291998	LTR|ERVL-MaLR|THE1B	+	chr17	10291819	10341458	STRG.97243.1	+	10291819,10303240,10317497,10318415,10320391,10324842,10341063	10291913,10303396,10317867,10318549,10320512,10324967,10341458	0.709677
SK_MEL_5	chr16	30624000	30624019	30624018	-	High_confidence	9	11	26	1.034056	4.056021	chr16	30623844	30624281	LTR|ERVK|LTR3B_	-	chr16	30604617	30624012	ZNF689|ENST00000566673.5	-	30604617,30609524,30610587,30623739	30605447,30609638,30610782,30624012	0.692308
SK_MEL_5	chr3	134494761	134494796	134494765	+	High_confidence	12	12	51	2.028340	4.716566	chr3	134494583	134494832	LINE|L2|L2c	-	chr3	134495293	134565028	CEP63|ENST00000337090.7	+	134495293,134507108,134531844,134532777,134537154,134545585,134546148,134547334,134549061,134550062,134551925,134558141,134559149,134561376	134495364,134507286,134531940,134532900,134537268,134545819,134546288,134547472,134549176,134550260,134552012,134558347,134559429,134565028	0.980392
SK_MEL_5	chr22	50757215	50757248	50757247	+	High_confidence	35	37	71	2.823767	4.995225	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.830986
SK_MEL_5	chr4	149943159	149943160	149943159	+	RAMPAGE_only	7	7	10	0.397714	2.521928	chr4	149942429	149943268	LTR|ERVL|MER21C	+	chr4	149956207	149958572	AC105343.1|ENST00000505586.1	+	149956207,149958280	149956273,149958572	0.800000
SK_MEL_5	chrX	135894271	135894281	135894280	+	High_confidence	7	7	20	0.795427	3.784184	chrX	135894101	135894371	SINE|Alu|AluSp	-	chrX	135893633	135913061	SAGE1|NM_018666.2	+	135893633,135896242,135901558,135904476,135905251,135906023,135906410,135906925,135907312,135907700,135908088,135908476,135908863,135909638,135910029,135910414,135911191,135911578,135912320,135912797	135893800,135896329,135901691,135904569,135905392,135906164,135906551,135907066,135907453,135907841,135908229,135908617,135909004,135909779,135910170,135910555,135911332,135911953,135912414,135913061	1.000000
SK_MEL_5	chr14	93810634	93810635	93810634	+	High_confidence	15	18	21	0.835199	3.368042	chr14	93810467	93810864	LTR|ERVL-MaLR|MLT1A1	+	chr14	93810647	93820094	STRG.87995.1	+	93810647,93818978	93810783,93820094	0.952381
SK_MEL_5	chr2	144924957	144924981	144924980	+	High_confidence	9	10	31	1.232912	4.220168	chr2	144924876	144925277	LTR|ERVL-MaLR|MLT1F2	+	chr2	144924887	145072843	STRG.16372.6	+	144924887,145017531,145070819,145072523	144925192,145017611,145070941,145072843	0.645161
SK_MEL_5	chr19	40772059	40772060	40772059	+	RAMPAGE_only	369	369	369	14.675634	4.594856	chr19	40771932	40772225	SINE|Alu|AluJo	-	chr19	40775176	40777493	MIA|NM_001202553.1	+	40775176,40775536,40775751,40776968,40777396	40775211,40775669,40775885,40777079,40777493	1.000000
SK_MEL_5	chr12	119876797	119876823	119876822	-	High_confidence	5	5	16	0.636342	3.189898	chr12	119876512	119876856	LINE|L2|L2a	-	chr12	119685790	119877288	CIT|ENST00000261833.11	-	119685790,119690150,119697658,119697975,119700744,119701623,119701849,119704362,119708178,119710250,119710539,119712177,119712590,119713202,119713467,119714196,119718244,119718698,119720477,119721308,119728501,119730494,119734163,119735159,119742410,119752049,119757370,119758590,119760938,119767086,119772769,119775785,119776357,119776671,119782517,119783907,119784959,119803205,119822819,119825164,119832770,119834085,119850173,119857522,119869059,119876072,119877248	119688255,119690454,119697838,119698054,119700825,119701752,119701958,119704455,119708318,119710386,119710620,119712347,119712695,119713294,119713648,119714334,119718409,119718861,119720585,119721449,119728606,119730630,119734357,119735357,119742464,119752247,119757545,119758700,119761055,119767182,119772910,119775839,119776408,119776842,119782637,119784051,119785065,119803389,119822973,119825368,119832864,119834228,119850275,119857698,119869201,119876181,119877288	0.562500
SK_MEL_5	chr2	61482956	61482968	61482964	-	RAMPAGE_only	3	3	9	0.357942	2.500000	chr2	61482597	61482921	SINE|Alu|AluSx3	-	chr2	61477934	61485958	STRG.13060.8	-	61477934,61482379,61482956,61483936,61485767	61478966,61482539,61483091,61484105,61485958	0.888889
SK_MEL_5	chr20	50267474	50267500	50267474	+	High_confidence	316	462	1775	70.594177	5.916958	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.983662
SK_MEL_5	chr5	14202779	14202801	14202779	+	High_confidence	18	19	77	3.062395	5.253404	chr5	14202502	14202919	LTR|ERVL-MaLR|THE1B	+	chr5	14202706	14290887	STRG.34113.14	+	14202706,14270824,14280321,14286870,14290715	14203314,14270899,14280436,14287063,14290887	0.922078
SK_MEL_5	chr2	181954491	181954513	181954491	+	High_confidence	7	7	37	1.471541	3.152327	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.864865
SK_MEL_5	chr17	31414994	31415024	31414999	-	High_confidence	4	4	26	1.034056	3.902175	chr17	31414820	31414974	LTR|ERVL-MaLR|MLT1L	-	chr17	31413918	31415027	STRG.98269.1	-	31413918,31414862	31414381,31415027	0.653846
SK_MEL_5	chr3	15756544	15756702	15756557	-	High_confidence	33	34	375	14.914263	6.735441	chr3	15756542	15756684	SINE|MIR|MIRc	+	chr3	15667235	15756551	ANKRD28|NM_001195099.1	-	15667235,15675897,15676973,15677479,15678208,15679300,15679475,15685225,15686001,15686221,15690018,15694738,15695187,15696133,15707923,15709667,15711210,15712139,15713526,15714577,15720914,15724381,15735409,15737032,15751749,15756483	15670556,15675989,15677056,15677562,15678354,15679384,15679563,15685445,15686119,15686309,15690220,15694813,15695214,15696245,15708064,15709736,15711274,15712222,15713641,15714656,15721127,15724524,15735497,15737233,15751820,15756551	0.922667
SK_MEL_5	chrX	18871391	18871392	18871391	+	High_confidence	12	14	17	0.676113	3.149397	chrX	18871222	18871559	LTR|ERVL-MaLR|THE1B	+	chrX	18871396	18891983	STRG.116175.1	+	18871396,18887522,18890117	18871476,18887625,18891983	0.647059
SK_MEL_5	chr14	102235108	102235222	102235221	-	High_confidence	6	7	45	1.789712	4.800311	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102229432	102235063	MOK|ENST00000522537.5	-	102229432,102232534,102233687,102234956	102229657,102232708,102233789,102235063	0.733333
SK_MEL_5	chr15	45441876	45441878	45441877	-	High_confidence	27	31	40	1.590855	4.108695	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45433569	45441869	STRG.89840.1	-	45433569,45441780	45434150,45441869	0.975000
SK_MEL_5	chr1	180558963	180558964	180558963	+	High_confidence	243	246	255	10.141699	6.022420	chr1	180558768	180559133	LTR|ERVL-MaLR|THE1A	+	chr1	180558973	180566518	OVAAL|NR_125716.1	+	180558973,180562203,180565250	180559055,180562344,180566518	0.890196
SK_MEL_5	chr2	76374638	76374639	76374638	-	RAMPAGE_only	12	12	12	0.477256	3.251629	chr2	76374481	76374826	LTR|ERVL-MaLR|THE1A	-	chr2	76355552	76358758	STRG.14086.1	-	76355552,76358492	76357562,76358758	0.833333
SK_MEL_5	chr10	116418664	116418675	116418664	+	High_confidence	55	55	98	3.897594	5.056301	chr10	116418471	116418817	LTR|ERVL-MaLR|THE1D	+	chr10	116418671	116477927	STRG.69013.1	+	116418671,116436710,116437220,116443054,116444381,116455721,116460965,116461167,116466049,116469184,116471767,116476651,116477089	116418753,116436865,116437351,116443174,116444513,116455830,116461085,116461290,116466168,116469317,116471879,116476819,116477927	0.673469
SK_MEL_5	chr8	12796521	12796566	12796521	-	High_confidence	10	10	68	2.704453	4.335152	chr8	12796147	12797467	LTR|ERV1|LTR12C	+	chr8	12770262	12796720	STRG.55200.10	-	12770262,12788331,12796136	12778356,12788444,12796720	0.808824
SK_MEL_5	chr11	62126253	62126265	62126253	+	High_confidence	5	5	14	0.556799	2.653544	chr11	62126200	62126495	SINE|Alu|AluSx3	-	chr11	62125440	62155874	STRG.71945.3	+	62125440,62128150,62128769,62129781,62137831,62138712,62138887,62140233,62140703,62140912,62144981,62145168,62145628,62146657,62148475,62148738,62150056,62151761	62126514,62128301,62128883,62130590,62137883,62138770,62139005,62140285,62140821,62141044,62145091,62145289,62145763,62146902,62148554,62148846,62150207,62155874	0.785714
SK_MEL_5	chr19	3575014	3575016	3575014	+	High_confidence	3	6	9	0.357942	2.641604	chr19	3574715	3575018	SINE|Alu|AluSz	-	chr19	3575541	3579083	STRG.104537.5	+	3575541,3576260,3576552,3576891,3577980,3578508	3575660,3576307,3576625,3577107,3578113,3579083	1.000000
SK_MEL_5	chr12	100592214	100592243	100592214	+	RAMPAGE_only	5	5	12	0.477256	2.688722	chr12	100592089	100592217	LINE|L1|L1ME3C	-	chr12	100593617	100624905	GAS2L3|ENST00000537247.5	+	100593617,100594874,100600381,100601637,100611007,100611999,100617743,100618448,100622274,100623561	100593973,100594922,100600550,100601753,100611263,100612141,100617807,100618587,100622382,100624905	0.833333
SK_MEL_5	chr14	24995170	24995207	24995188	-	High_confidence	26	30	161	6.403190	6.004990	chr14	24995038	24995370	LTR|ERVL-MaLR|MLT1A0	-	chr14	24812491	24995196	STRG.85031.6	-	24812491,24819036,24855935,24857026,24974664,24994863	24812732,24819194,24856101,24857157,24974850,24995196	0.900621
SK_MEL_5	chr8	57746128	57746129	57746128	+	High_confidence	18	18	25	0.994284	3.636842	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.960000
SK_MEL_5	chr15	82546441	82546442	82546441	-	RAMPAGE_only	30	30	30	1.193141	3.973557	chr15	82546117	82546394	SINE|Alu|AluSx1	-	chr15	82536749	82540564	RPS17|ENST00000330244.11	-	82536749,82538305,82538879,82539980,82540425	82536881,82538371,82538985,82540132,82540564	1.000000
SK_MEL_5	chr5	29395978	29396010	29395988	-	High_confidence	8	9	26	1.034056	4.053509	chr5	29394634	29396044	LTR|ERV1|HERVFH21-int	+	chr5	29380069	29395976	LOC101929681|NR_104628.1	-	29380069,29381852,29384319,29389810,29395853	29380325,29381962,29384392,29389939,29395976	0.538462
SK_MEL_5	chr16	4355592	4355593	4355592	-	High_confidence	581	587	589	23.425335	4.867526	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.977929
SK_MEL_5	chr1	185257341	185257362	185257341	+	RAMPAGE_only	5	5	17	0.676113	3.454822	chr1	185251798	185257805	LINE|L1|L1PA2	-	chr1	185194163	185291381	STRG.7873.3	+	185194163,185202653,185204699,185206624,185214506,185221848,185231576,185271322,185276603,185290673	185194187,185202799,185204863,185206763,185214655,185222036,185231708,185271389,185276668,185291381	1.000000
SK_MEL_5	chr1	9375117	9375127	9375126	-	High_confidence	2	3	8	0.318171	2.521641	chr1	9375013	9375423	LTR|ERV1|MER83	+	chr1	9373138	9375118	STRG.524.1	-	9373138,9375012	9373282,9375118	0.500000
SK_MEL_5	chr8	105911837	105911869	105911868	-	RAMPAGE_only	11	20	41	1.630626	5.095238	chr8	105911686	105912062	LTR|ERVL-MaLR|THE1D	-	chr8	105784804	106060461	STRG.58550.2	-	105784804,105787066,105787448,105798324,105927650,106059080,106060380	105785217,105787221,105787596,105798442,105927717,106059136,106060461	0.536585
SK_MEL_5	chr12	56109251	56109290	56109289	+	RAMPAGE_only	4	4	17	0.676113	3.616875	chr12	56109338	56109649	SINE|Alu|AluSq	+	chr12	56104318	56113861	PA2G4|ENST00000303305.10	+	56104318,56106587,56106989,56107186,56107520,56109229,56109856,56110398,56110558,56110963,56111181,56111475,56112822	56104825,56106716,56107095,56107256,56107613,56109293,56109935,56110477,56110692,56111058,56111309,56111529,56113861	1.000000
SK_MEL_5	chr17	15847930	15847935	15847930	-	RAMPAGE_only	3	4	9	0.357942	2.947703	chr17	15847863	15847931	SINE|MIR|MIRc	+	chr17	15831136	15837982	STRG.97416.1	-	15831136,15837815	15831580,15837982	0.888889
SK_MEL_5	chr17	44689902	44689950	44689947	-	High_confidence	3	3	10	0.397714	3.121928	chr17	44689916	44690110	SINE|MIR|MIRb	-	chr17	44677436	44689797	CCDC43|NM_144609.2	-	44677436,44680584,44682002,44683871,44689549	44679043,44680643,44682138,44683959,44689797	1.000000
SK_MEL_5	chr4	62439193	62439214	62439213	-	High_confidence	43	45	71	2.823767	5.503630	chr4	62439054	62439409	LTR|ERVL-MaLR|THE1A	-	chr4	62437535	62439169	STRG.30209.1	-	62437535,62439130	62438472,62439169	0.943662
SK_MEL_5	chr22	24011756	24011757	24011756	+	High_confidence	13	13	13	0.517028	3.026987	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
SK_MEL_5	chr18	77127950	77127984	77127950	-	High_confidence	58	59	180	7.158846	5.946372	chr18	77125932	77128521	LINE|L1|L1MD2	+	chr18	77066311	77127712	MBP|ENST00000583798.1	-	77066311,77105210,77127289	77066385,77105286,77127712	0.583333
SK_MEL_5	chr16	10671789	10671790	10671789	-	High_confidence	16	18	22	0.874970	3.975418	chr16	10671622	10671991	LTR|ERVL-MaLR|THE1B	-	chr16	10627500	10671778	TEKT5|ENST00000574923.1	-	10627500,10635763,10671709	10627799,10635918,10671778	0.909091
SK_MEL_5	chr11	123469402	123469415	123469402	+	RAMPAGE_only	74	85	121	4.812335	3.628207	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123480737	123594838	GRAMD1B|ENST00000633087.1	+	123480737,123577366,123584311,123594081,123594734	123480893,123577577,123584332,123594166,123594838	0.851240
SK_MEL_5	chr3	190515054	190515097	190515076	+	High_confidence	14	15	50	1.988568	4.713270	chr3	190515115	190515348	SINE|MIR|MIRb	+	chr3	190514588	190651512	STRG.27493.1	+	190514588,190520501,190550341,190556129,190564288,190604127,190608994,190620274,190623343,190627322,190629349,190644247,190645698,190648337	190518031,190521571,190550505,190556216,190564353,190604413,190609181,190620440,190623415,190627449,190629498,190644397,190645842,190651512	1.000000
SK_MEL_5	chr1	153119387	153119394	153119387	-	RAMPAGE_only	8	8	16	0.636342	2.555037	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112113	153113515	SPRR2F|ENST00000468739.1	-	153112113,153113473	153112752,153113515	1.000000
SK_MEL_5	chr6	140898421	140898430	140898421	-	High_confidence	106	190	463	18.414143	6.642568	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140898418	STRG.46264.1	-	140845957,140852818,140898187	140846304,140852924,140898418	0.760259
SK_MEL_5	chr2	86510647	86510680	86510647	-	RAMPAGE_only	3	3	11	0.437485	2.913977	chr2	86510571	86510804	DNA|TcMar-Tigger|Tigger19a	-	chr2	86507047	86512535	CHMP3|ENST00000494623.1	-	86507047,86510357	86507593,86512535	0.545455
SK_MEL_5	chr3	6490724	6490748	6490724	+	High_confidence	3	3	11	0.437485	2.732159	chr3	6484911	6490929	LINE|L1|L1PA2	-	chr3	6490802	6557959	AC069277.1|ENST00000414603.1	+	6490802,6557586	6490946,6557959	1.000000
SK_MEL_5	chr7	130794520	130794530	130794529	+	RAMPAGE_only	7	7	21	0.835199	3.363287	chr7	130794500	130794857	LTR|ERV1|MER51B	-	chr7	130807112	130832742	STRG.53509.1	+	130807112,130832581	130807173,130832742	0.571429
SK_MEL_5	chr22	26627215	26627219	26627218	+	High_confidence	4	4	8	0.318171	2.750000	chr22	26627111	26627250	SINE|MIR|MIRb	-	chr22	26627163	26630663	STRG.113666.1	+	26627163,26628287,26630339	26627239,26628430,26630663	0.875000
SK_MEL_5	chr1	148279242	148279274	148279251	+	High_confidence	34	34	164	6.522504	5.822789	chr1	148279033	148279814	LINE|L1|L1MEc	+	chr1	148279254	148292855	STRG.5879.1	+	148279254,148287689,148292179	148279531,148289311,148292855	0.963415
SK_MEL_5	chr3	125497340	125497341	125497340	-	RAMPAGE_only	5	5	8	0.318171	2.750000	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	0.875000
SK_MEL_5	chr15	65244454	65244455	65244454	-	High_confidence	374	403	506	20.124312	6.052287	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234464	65244458	STRG.90794.1	-	65234464,65244370	65234823,65244458	0.958498
SK_MEL_5	chr1	218418820	218418821	218418820	+	RAMPAGE_only	13	13	18	0.715885	3.454822	chr1	218418622	218418996	LTR|ERVL-MaLR|THE1B	+	chr1	218434125	218442141	TGFB2|ENST00000479322.1	+	218434125,218434337,218435969,218437342,218441203	218434252,218434448,218436147,218437496,218442141	0.944444
SK_MEL_5	chr4	915292	915303	915302	-	RAMPAGE_only	4	4	8	0.318171	2.500000	chr4	915293	915450	LINE|L1|L1M5	+	chr4	849277	932220	STRG.28027.2	-	849277,849891,850935,851749,859605,865121,866363,866955,868538,870710,876529,877089,877614,881906,882696,883314,884036,888846,890531,893376,893873,896459,898032,904636,911672,912734,913606,932042	849774,850068,851084,851974,859722,865244,866501,867432,868685,870904,876609,877207,877809,882040,882819,883463,884086,888970,890622,893489,894009,896549,898158,904779,911787,912794,913668,932220	0.625000
SK_MEL_5	chr13	42424879	42424880	42424879	+	RAMPAGE_only	10	10	10	0.397714	3.121928	chr13	42424880	42430912	LINE|L1|L1PA2	+	chr13	42339187	42444144	LINC02341|ENST00000637462.1	+	42339187,42342480,42384256,42394331,42411895,42435199,42437317,42443966	42339294,42342602,42384466,42394603,42412052,42435293,42437472,42444144	0.900000
SK_MEL_5	chr1	17755312	17755335	17755334	+	High_confidence	5	7	16	0.636342	3.323231	chr1	17755152	17755695	LTR|ERVL|LTR41	+	chr1	17755312	17827063	ACTL8|NM_030812.2	+	17755312,17822984,17825766	17755504,17823356,17827063	0.937500
SK_MEL_5	chr2	191323151	191323155	191323152	+	RAMPAGE_only	12	15	30	1.193141	4.253434	chr2	191322769	191323409	LTR|ERV1|MER41B	-	chr2	191276884	191425389	MYO1B|ENST00000392316.5	+	191276884,191296110,191329934,191341460,191346235,191350161,191360630,191362267,191363727,191364157,191369541,191370226,191381461,191383279,191385883,191387223,191390291,191392107,191393072,191396428,191400381,191402631,191408114,191409043,191411065,191414047,191414516,191416114,191423836	191277030,191296226,191330029,191341565,191346282,191350225,191360729,191362371,191363875,191364276,191369628,191370292,191381566,191383342,191386084,191387450,191390492,191392201,191393222,191396497,191400468,191402718,191408189,191409178,191411172,191414180,191414669,191416242,191425389	0.900000
SK_MEL_5	chr9	138172808	138172840	138172808	-	High_confidence	22	22	63	2.505596	5.169180	chr9	138172667	138172875	LTR|ERVL-MaLR|THE1B	-	chr9	138163089	138173189	STRG.65285.1	-	138163089,138167715,138172749	138164048,138167813,138173189	0.888889
SK_MEL_5	chr3	135974317	135974338	135974317	+	RAMPAGE_only	2	2	9	0.357942	2.725481	chr3	135974357	135974696	LINE|L2|L2b	+	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.777778
SK_MEL_5	chr16	66408519	66408564	66408538	+	High_confidence	13	14	108	4.295308	5.953581	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408539	66411911	STRG.94956.1	+	66408539,66409481,66410279	66408814,66409548,66411911	0.870370
SK_MEL_5	chr3	98733145	98733231	98733221	+	High_confidence	26	27	164	6.522504	6.204913	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.890244
SK_MEL_5	chr14	103427992	103427994	103427992	+	RAMPAGE_only	5	7	10	0.397714	2.846439	chr14	103427525	103428035	LTR|ERV1|MER41B	-	chr14	103429192	103465730	MARK3|ENST00000561164.1	+	103429192,103448918,103451917,103457141,103462404,103465556	103429373,103448967,103451983,103457212,103462461,103465730	0.500000
SK_MEL_5	chr7	22819445	22819473	22819450	-	RAMPAGE_only	3	3	14	0.556799	3.039149	chr7	22819372	22819629	SINE|Alu|AluSx	-	chr7	22812970	22818335	TOMM7|ENST00000483581.1	-	22812970,22817999	22813185,22818335	0.857143
SK_MEL_5	chr6	13326405	13326432	13326405	-	High_confidence	3	3	9	0.357942	2.947703	chr6	13326180	13326482	SINE|Alu|AluSz	+	chr6	13266541	13326912	TBC1D7|ENST00000606214.5	-	13266541,13305061,13306397,13307599,13316570,13320907,13325093,13326786	13267835,13305187,13306527,13307745,13316708,13321095,13325174,13326912	0.888889
SK_MEL_5	chr11	38593714	38593737	38593736	-	High_confidence	6	6	17	0.676113	3.616875	chr11	38593474	38593835	LTR|ERVL-MaLR|MLT1A0	-	chr11	38579991	38593660	STRG.71210.1	-	38579991,38581019,38593528	38580266,38581067,38593660	0.588235
SK_MEL_5	chr12	99261361	99261389	99261361	-	High_confidence	3	4	16	0.636342	3.125000	chr12	99261121	99262375	LINE|L2|L2a	+	chr12	99260899	99261111	STRG.79381.1	-	99260899	99261111	0.500000
SK_MEL_5	chr1	150729944	150729967	150729944	-	High_confidence	5	5	27	1.073827	3.902312	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150698553	150729794	STRG.6217.1	-	150698553,150700111,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150714084,150714614,150717137,150719472,150729141,150729573	150698734,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150714121,150714678,150717282,150719538,150729225,150729794	0.851852
SK_MEL_5	chr11	88102044	88102050	88102049	-	RAMPAGE_only	15	17	35	1.391998	4.438334	chr11	88102044	88102206	SINE|MIR|MIR	-	chr11	87818686	88036011	STRG.73468.1	-	87818686,87954832,88035479	87819409,87954906,88036011	0.600000
SK_MEL_5	chr7	6257768	6257798	6257768	-	High_confidence	49	58	294	11.692782	6.341018	chr7	6257761	6258020	LTR|ERVL-MaLR|MLT1L	-	chr7	6165566	6258237	STRG.48016.4	-	6165566,6165733,6170534,6170829,6171201,6173652,6177822,6187049,6187656,6190448,6257735	6165616,6165810,6170646,6170978,6171314,6173733,6177941,6187116,6187721,6190531,6258237	0.897959
SK_MEL_5	chr22	50756908	50756950	50756949	+	High_confidence	5	5	23	0.914741	3.533771	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50799123	STRG.115621.5	+	50756947,50783119,50785172,50798654	50757326,50783294,50785293,50799123	0.826087
SK_MEL_5	chr14	46885946	46885969	46885968	-	High_confidence	5	6	12	0.477256	3.188722	chr14	46885639	46886113	LTR|ERVL|LTR40a	-	chr14	46836770	46885928	STRG.86053.5	-	46836770,46845765,46855023,46873432,46874044,46882043,46885787	46842019,46845871,46855154,46873591,46874200,46882221,46885928	0.833333
SK_MEL_5	chr10	112589316	112589372	112589366	+	High_confidence	37	46	195	7.755417	6.513615	chr10	112589165	112589539	LTR|ERVL-MaLR|THE1B	+	chr10	112589288	112818744	STRG.68935.7	+	112589288,112668217,112668936,112815289	112589456,112668288,112668998,112818744	0.630769
SK_MEL_5	chr17	602163	602185	602163	-	RAMPAGE_only	4	6	10	0.397714	2.646439	chr17	602038	602389	LINE|L2|L2c	+	chr17	518952	676407	VPS53|ENST00000576149.5	-	518952,519825,521600,532841,537027,551871,553379,560425,562502,586269,599944,601794,623532,627173,628087,631549,676179	519298,519930,521738,532911,537176,551950,553462,560573,562745,586364,600094,601896,623674,627316,628231,631628,676407	0.900000
SK_MEL_5	chr1	54413479	54413493	54413492	-	High_confidence	7	7	19	0.755656	3.614369	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54243236	54413479	SSBP3|ENST00000525990.1	-	54243236,54251615,54251793,54257126,54281437,54401860,54404575,54404857,54413355	54243299,54251692,54251860,54257186,54281527,54401945,54404637,54404930,54413479	0.578947
SK_MEL_5	chr5	160436830	160436831	160436830	+	High_confidence	249	300	352	13.999521	6.493580	chr5	160436638	160437010	LTR|ERVL-MaLR|THE1C	+	chr5	160436785	160437941	STRG.40023.1	+	160436785,160437040	160436928,160437941	0.784091
SK_MEL_5	chr6	48111154	48111194	48111177	-	High_confidence	67	67	258	10.261013	6.520487	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47899609	48111196	STRG.43278.1	-	47899609,48008633,48068229,48068952,48102126,48111048	47901935,48009114,48068641,48069926,48102185,48111196	0.755814
SK_MEL_5	chr11	117842250	117842278	117842269	-	High_confidence	6	6	25	0.994284	3.886842	chr11	117842269	117842452	SINE|MIR|MIRb	-	chr11	117837999	117842261	FXYD6|ENST00000583233.5	-	117837999,117839780,117840318,117841147,117841790,117841989,117842106	117838277,117839830,117840368,117841184,117841865,117842028,117842261	0.920000
SK_MEL_5	chr14	46885864	46885868	46885867	-	High_confidence	173	274	458	18.215286	4.327486	chr14	46885639	46886113	LTR|ERVL|LTR40a	-	chr14	46836770	46885928	STRG.86053.5	-	46836770,46845765,46855023,46873432,46874044,46882043,46885787	46842019,46845871,46855154,46873591,46874200,46882221,46885928	0.967249
SK_MEL_5	chr10	101653636	101653657	101653656	-	High_confidence	19	19	48	1.909026	4.670915	chr10	101653453	101653821	LINE|L2|L2c	+	chr10	101610665	101653683	STRG.68450.3	-	101610665,101611627,101612336,101624744,101653476	101611410,101611769,101612477,101624810,101653683	0.937500
SK_MEL_5	chr13	46466794	46466847	46466806	-	High_confidence	5	7	34	1.352226	4.499228	chr13	46466605	46467206	LTR|ERV1|HERVE-int	+	chr13	46455134	46466816	LINC01198|ENST00000648041.1	-	46455134,46457839,46464735,46465903,46466608	46455511,46457913,46464819,46465987,46466816	0.500000
SK_MEL_5	chr9	77822994	77823008	77822994	-	RAMPAGE_only	8	8	30	1.193141	3.646967	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77716273	78031449	GNAQ|NM_002072.4	-	77716273,77728513,77794462,77797519,77815615,77922160,78031099	77721513,77728667,77794592,77797648,77815770,77922345,78031449	0.833333
SK_MEL_5	chr3	69999732	69999733	69999732	+	High_confidence	749	760	804	31.976179	7.579224	chr3	69999500	70000000	LTR|ERV1|LTR1A2	+	chr3	69999732	70014787	SAMMSON|ENST00000641286.1	+	69999732,70012356,70013519	69999867,70012598,70014787	0.531095
SK_MEL_5	chr1	226542738	226542739	226542738	-	High_confidence	306	321	435	17.300545	6.466594	chr1	226542461	226543018	LTR|ERVL|LTR66	-	chr1	226535704	226542757	STRG.9621.1	-	226535704,226541136,226542638	226538699,226541255,226542757	0.873563
SK_MEL_5	chr11	13415179	13415251	13415210	-	RAMPAGE_only	11	12	63	2.505596	4.762675	chr11	13415107	13415246	SINE|Alu|AluSx3	-	chr11	13387995	13440279	BTBD10|NM_001297742.1	-	13387995,13403167,13405658,13413529,13417157,13419459,13421641,13439883	13389141,13403278,13405856,13413650,13417260,13419745,13421838,13440279	0.873016
SK_MEL_5	chr11	16252563	16252592	16252563	-	RAMPAGE_only	4	6	19	0.755656	3.572431	chr11	16252183	16253065	LINE|L1|L1MC1	+	chr11	15986264	16234673	STRG.70524.8	-	15986264,15988996,16014941,16046513,16049712,16055751,16097608,16111802,16183885,16186782,16234581	15986420,15989230,16015050,16046701,16049938,16055901,16097688,16111923,16183954,16186955,16234673	0.842105
SK_MEL_5	chr4	166198270	166198283	166198270	+	High_confidence	27	32	87	3.460109	5.136801	chr4	166198159	166198478	LTR|ERV1|MER61A	+	chr4	166198280	166452550	STRG.32710.1	+	166198280,166198943,166319993,166438485,166450637,166450807	166198511,166199013,166320084,166438568,166450680,166452550	0.839080
SK_MEL_5	chr14	83385772	83385774	83385773	+	High_confidence	8	16	20	0.795427	3.884184	chr14	83385509	83385823	LINE|L1|L1MA9	-	chr14	83385887	83401170	STRG.87585.1	+	83385887,83388479,83396010,83400709	83386233,83388592,83396113,83401170	0.950000
SK_MEL_5	chr5	27472283	27472304	27472283	+	High_confidence	365	387	943	37.504399	7.361180	chr5	27472073	27472487	LTR|ERV1|MER61C	+	chr5	27472291	27493253	STRG.34390.2	+	27472291,27475534,27484925	27472519,27477801,27493253	0.763521
SK_MEL_5	chr14	24994980	24995001	24994998	-	High_confidence	4	4	12	0.477256	2.845351	chr14	24994726	24995030	SINE|Alu|AluSx	+	chr14	24812491	24995196	STRG.85031.6	-	24812491,24819036,24855935,24857026,24974664,24994863	24812732,24819194,24856101,24857157,24974850,24995196	0.916667
SK_MEL_5	chr1	236024970	236024971	236024970	+	High_confidence	8	8	11	0.437485	2.732159	chr1	236024947	236025251	SINE|Alu|AluSx	-	chr1	236025114	236027897	STRG.10100.1	+	236025114,236025904,236027298	236025659,236026058,236027897	0.545455
SK_MEL_5	chr7	26346422	26346423	26346422	+	RAMPAGE_only	4	4	7	0.278400	2.584963	chr7	26346432	26346464	DNA|hAT-Ac|OldhAT1	+	chr7	26354056	26372608	SNX10|ENST00000409367.5	+	26354056,26360974,26364534,26365046,26371820,26372490	26354184,26361061,26364635,26365145,26372033,26372608	0.714286
SK_MEL_5	chr4	95061980	95061982	95061981	+	High_confidence	27	36	43	1.710169	4.469582	chr4	95061793	95062180	LTR|ERVL-MaLR|MSTA	+	chr4	95061988	95158448	STRG.31197.2	+	95061988,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547,95156786	95062095,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95154713,95158448	0.720930
SK_MEL_5	chr11	1598982	1598988	1598987	-	High_confidence	5	9	16	0.636342	3.106891	chr11	1598729	1599080	LTR|ERVL-MaLR|MSTB	-	chr11	1597205	1598953	STRG.69806.1	-	1597205,1598844	1597871,1598953	0.937500
SK_MEL_5	chr9	62897365	62897389	62897380	+	High_confidence	3	3	9	0.357942	2.947703	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897375	62899777	LOC728673|NR_126047.1	+	62897375,62897877	62897734,62899777	0.555556
SK_MEL_5	chr1	235882165	235882198	235882165	-	RAMPAGE_only	2	2	7	0.278400	2.521641	chr1	235882113	235882614	LINE|L2|L2c	-	chr1	235828804	235883616	LYST|ENST00000468107.5	-	235828804,235830225,235833577,235883186	235829036,235830424,235833667,235883616	0.571429
SK_MEL_5	chr1	240339052	240339053	240339052	+	High_confidence	6	6	7	0.278400	2.584963	chr1	240338677	240339204	DNA|hAT-Charlie|MER1A	-	chr1	240339119	240475663	STRG.10256.1	+	240339119,240355815,240392510,240438060,240472371,240474127	240339249,240355908,240392562,240438210,240472453,240475663	0.857143
SK_MEL_5	chr15	84042410	84042412	84042410	+	High_confidence	8	15	16	0.636342	3.189898	chr15	84042408	84043645	LINE|L1|L1P1	+	chr15	84042433	84043448	STRG.91807.1	+	84042433,84043250	84042506,84043448	0.562500
SK_MEL_5	chr6	114998133	114998160	114998133	+	High_confidence	12	14	32	1.272684	4.327820	chr6	114998054	114998374	LTR|ERV1|LTR12F	+	chr6	114998150	115002066	STRG.45181.1	+	114998150,115001589	114998419,115002066	0.812500
SK_MEL_5	chr6	34219370	34219371	34219370	+	High_confidence	23	24	32	1.272684	3.388640	chr6	34219234	34219371	SINE|Alu|AluSx	+	chr6	34219438	34220066	CYCSP55|ENST00000399027.3	+	34219438,34220022	34219705,34220066	0.718750
SK_MEL_5	chr3	33864090	33864128	33864090	+	RAMPAGE_only	3	3	20	0.795427	3.546439	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	1.000000
SK_MEL_5	chr8	93000407	93000408	93000407	-	RAMPAGE_only	7	9	11	0.437485	3.095795	chr8	93000239	93000610	LTR|ERVL-MaLR|THE1B	-	chr8	92885713	93003306	STRG.57961.8	-	92885713,92891988,92916928,92954405,93003203	92886735,92892074,92917010,92954564,93003306	0.909091
SK_MEL_5	chr17	27952600	27952625	27952607	+	RAMPAGE_only	7	7	34	1.352226	3.821227	chr17	27952522	27952949	LINE|L2|L2a	-	chr17	27964357	27964633	STRG.97934.1	+	27964357	27964633	0.882353
SK_MEL_5	chr14	92813470	92813532	92813531	+	RAMPAGE_only	13	14	45	1.789712	4.641527	chr14	92813216	92814485	LINE|L2|L2c	-	chr14	92794230	92839963	GOLGA5|NM_005113.3	+	92794230,92797407,92806735,92809299,92810253,92811550,92816250,92819707,92824545,92833121,92835558,92837385,92839365	92794456,92797981,92806963,92809519,92810377,92811754,92816421,92819836,92824644,92833347,92835664,92837449,92839963	0.888889
SK_MEL_5	chr1	231903929	231903946	231903934	+	High_confidence	3	3	10	0.397714	2.725481	chr1	231903447	231904021	LINE|L2|L2a	-	chr1	231903951	232041127	STRG.9905.7	+	231903951,231958827,232008784,232026434,232036691	231904146,231958888,232009049,232026552,232041127	0.800000
SK_MEL_5	chr12	21214621	21214633	21214622	+	RAMPAGE_only	4	8	14	0.556799	2.896292	chr12	21209060	21215087	LINE|L1|L1PA2	-	chr12	21131201	21239246	SLCO1B1|ENST00000256958.2	+	21131201,21141513,21172649,21174576,21176775,21178575,21178921,21196945,21200507,21202490,21205867,21217118,21222299,21224721,21238978	21131236,21141658,21172791,21174709,21176897,21178722,21179020,21197188,21200672,21202686,21206033,21217303,21222364,21224839,21239246	0.571429
SK_MEL_5	chr14	34169519	34169520	34169519	-	RAMPAGE_only	12	12	13	0.517028	2.918296	chr14	34169255	34169569	LINE|L1|L1ME4b	-	chr14	34096162	34227814	EGLN3|ENST00000546681.5	-	34096162,34127028,34169490,34227758	34096415,34127144,34169646,34227814	0.538462
SK_MEL_5	chr8	86413890	86413895	86413894	+	High_confidence	24	24	59	2.346511	4.883337	chr8	86413781	86413929	LINE|L2|L2c	-	chr8	86413469	86452581	STRG.57618.3	+	86413469,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558	86413971,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452581	0.864407
SK_MEL_5	chr11	78587769	78587822	78587769	+	RAMPAGE_only	4	4	17	0.676113	3.175123	chr11	78587158	78587959	LINE|L2|L2a	-	chr11	78594614	78595463	STRG.73232.1	+	78594614	78595463	0.705882
SK_MEL_5	chr12	28825782	28825798	28825788	-	High_confidence	4	4	11	0.437485	2.913977	chr12	28825676	28826170	LTR|ERVL|MLT2B3	-	chr12	28821974	28825831	AC022081.1|ENST00000537327.1	-	28821974,28825697	28822273,28825831	1.000000
SK_MEL_5	chr16	11782754	11782762	11782754	-	High_confidence	3	3	7	0.278400	2.584963	chr16	11782598	11782913	SINE|Alu|AluSx1	-	chr16	11750585	11782552	ZC3H7A|ENST00000396516.6	-	11750585,11752668,11756236,11758430,11761405,11761909,11762670,11763477,11765052,11765488,11767416,11768314,11769030,11770782,11774235,11774979,11776319,11776451,11776750,11779165,11781424,11782286	11751506,11752832,11756370,11758539,11761511,11762043,11762747,11763659,11765153,11765685,11767578,11768501,11769095,11770987,11774519,11775013,11776358,11776532,11776909,11779363,11781464,11782552	0.857143
SK_MEL_5	chr7	22802151	22802173	22802172	+	High_confidence	19	19	58	2.306739	4.544716	chr7	22801904	22802366	LTR|ERV1|MER61B	+	chr7	22802276	22806348	STRG.48485.1	+	22802276,22805722	22802397,22806348	0.517241
SK_MEL_5	chr17	15847868	15847891	15847890	-	RAMPAGE_only	4	5	10	0.397714	3.169925	chr17	15847863	15847931	SINE|MIR|MIRc	+	chr17	15831136	15837982	STRG.97416.1	-	15831136,15837815	15831580,15837982	0.800000
SK_MEL_5	chr12	49738995	49739039	49739038	+	High_confidence	7	7	17	0.676113	3.572469	chr12	49735987	49739725	LTR|ERV1|Harlequin-int	+	chr12	49738992	49758483	TMBIM6|ENST00000546796.5	+	49738992,49752463,49752972,49755634,49758226,49758382	49739082,49752549,49753081,49755755,49758275,49758483	0.764706
SK_MEL_5	chr13	64880421	64880450	64880449	-	High_confidence	39	55	99	3.937365	5.098165	chr13	64879795	64880504	LTR|ERV1|LTR1	-	chr13	64880223	64880438	STRG.83011.1	-	64880223	64880438	0.696970
SK_MEL_5	chr15	27377546	27377547	27377546	-	High_confidence	16	17	18	0.715885	3.530493	chr15	27377395	27377726	LTR|ERVL-MaLR|THE1B	-	chr15	27375368	27377528	STRG.88773.1	-	27375368,27377465	27375983,27377528	0.888889
SK_MEL_5	chr18	12420026	12420027	12420026	+	High_confidence	8	8	11	0.437485	2.721928	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12420016	12429364	PRELID3A|ENST00000587862.5	+	12420016,12420324,12421539,12427040,12427220,12429349	12420148,12420493,12421629,12427111,12427323,12429364	0.818182
SK_MEL_5	chr3	146684605	146684606	146684605	-	High_confidence	19	21	23	0.914741	4.106603	chr3	146684437	146684800	LTR|ERVL-MaLR|THE1A	-	chr3	146682612	146684595	STRG.25958.1	-	146682612,146684521	146683448,146684595	0.782609
SK_MEL_5	chr20	16864330	16864353	16864352	+	High_confidence	8	8	15	0.596571	3.093069	chr20	16864107	16864582	LTR|ERVL-MaLR|MLT1F1	+	chr20	16864300	16873776	STRG.109483.1	+	16864300,16873385	16864548,16873776	0.733333
SK_MEL_5	chr6	125219559	125219583	125219559	+	High_confidence	8	9	44	1.749940	4.496850	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219736	125263038	STRG.45523.5	+	125219736,125220077,125229117,125248281,125253716,125262833	125219806,125220193,125229266,125248383,125253755,125263038	0.772727
SK_MEL_5	chr5	149905170	149905189	149905188	-	RAMPAGE_only	5	6	11	0.437485	3.095795	chr5	149904974	149905604	LINE|L2|L2c	+	chr5	149857954	149944793	PDE6A|ENST00000617647.4	-	149857954,149859891,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647,149907311,149914942,149921634,149931027,149944199	149858530,149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149903695,149907378,149915007,149921709,149931168,149944793	0.818182
SK_MEL_5	chr1	95451349	95451355	95451352	+	High_confidence	15	15	40	1.590855	4.684184	chr1	95451209	95451428	SINE|MIR|MIRb	+	chr1	95451371	95453991	STRG.4636.1	+	95451371,95452529,95453824	95451407,95452786,95453991	0.500000
SK_MEL_5	chr7	107632772	107632822	107632807	+	High_confidence	5	5	24	0.954513	3.220176	chr7	107632484	107632871	LTR|ERVL-MaLR|MLT1D	-	chr7	107632821	107718105	STRG.52665.1	+	107632821,107658157,107661638,107663295,107672137,107674163,107674944,107683201,107683454,107689052,107690123,107694402,107694620,107695932,107698041,107700082,107701100,107701826,107704330,107710053,107712538,107715422	107632875,107658265,107661805,107663435,107672248,107674348,107675109,107683354,107683537,107689200,107690237,107694480,107694716,107696039,107698111,107700175,107701196,107702057,107704385,107710199,107712622,107718105	0.500000
SK_MEL_5	chr7	12497207	12497211	12497207	+	High_confidence	6	6	10	0.397714	2.921928	chr7	12497211	12500000	LINE|L1|L1HS	+	chr7	12497245	12541135	LOC102725191|NR_136262.1	+	12497245,12528901,12531012,12540919	12497309,12529044,12531092,12541135	0.600000
SK_MEL_5	chr1	76034010	76034018	76034010	+	RAMPAGE_only	9	9	27	1.073827	3.602317	chr1	76033790	76034164	LTR|ERVL-MaLR|MLT1B	+	chr1	76041690	76066228	AC092813.2|ENST00000434540.1	+	76041690,76066037	76041898,76066228	0.925926
SK_MEL_5	chr10	103181328	103181329	103181328	-	RAMPAGE_only	13	13	17	0.676113	3.750000	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.823529
SK_MEL_5	chr12	123272358	123272378	123272377	-	High_confidence	3	3	12	0.477256	2.855389	chr12	123272292	123272359	DNA|hAT-Charlie|Charlie4z	-	chr12	123261275	123272334	CDK2AP1|ENST00000544658.5	-	123261275,123265195,123267184,123272156	123261803,123265322,123267282,123272334	1.000000
SK_MEL_5	chr7	107580506	107580536	107580506	+	High_confidence	5	5	14	0.556799	3.182006	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.785714
SK_MEL_5	chr4	65241805	65241830	65241805	-	High_confidence	4	5	19	0.755656	3.826875	chr4	65241173	65242746	LTR|ERV1|MER52A	-	chr4	65225866	65241814	AC018683.1|ENST00000649562.1	-	65225866,65238383,65241181	65226010,65238464,65241814	0.684211
SK_MEL_5	chr6	88095363	88095370	88095363	-	High_confidence	188	197	275	10.937126	6.791505	chr6	88095045	88095712	LTR|ERVL|LTR66	-	chr6	88072674	88095382	STRG.44281.1	-	88072674,88077284,88095268	88073756,88077417,88095382	0.821818
SK_MEL_5	chr2	206771768	206771773	206771768	+	RAMPAGE_only	9	9	18	0.715885	3.337175	chr2	206771533	206771837	SINE|Alu|AluJo	+	chr2	206765646	206791946	FASTKD2|ENST00000487777.5	+	206765646,206766643,206770090,206771181,206771893,206772180,206774224,206786732,206787936,206788818	206765654,206767470,206770194,206771290,206772017,206772320,206774397,206786899,206788155,206791946	0.944444
SK_MEL_5	chr2	13533002	13533049	13533002	-	RAMPAGE_only	5	5	14	0.556799	3.085055	chr2	13532711	13533096	LTR|ERV1|HERVE_a-int	-	chr2	13519723	13523292	STRG.11006.1	-	13519723,13523276	13520073,13523292	0.571429
SK_MEL_5	chr3	197953577	197953606	197953605	+	High_confidence	4	5	12	0.477256	3.251629	chr3	197953519	197953867	LINE|L2|L2a	+	chr3	197953562	197955851	RPL35A|ENST00000474640.1	+	197953562,197955749	197954147,197955851	1.000000
SK_MEL_5	chr2	55615837	55615857	55615856	-	High_confidence	17	18	49	1.948797	4.308689	chr2	55615580	55615882	SINE|Alu|AluSc	+	chr2	55598697	55616617	PPP4R3B|ENST00000470801.1	-	55598697,55603977,55615450,55616517	55599039,55604076,55615506,55616617	0.673469
SK_MEL_5	chr1	248731089	248731121	248731098	-	High_confidence	18	18	63	2.505596	5.056565	chr1	248730810	248731492	LTR|ERV1|MER50B	-	chr1	248718343	248731109	STRG.10511.1	-	248718343,248721269,248729192,248730804	248718807,248722205,248729301,248731109	0.825397
SK_MEL_5	chr4	69051395	69051441	69051430	+	High_confidence	31	49	274	10.897355	5.802016	chr4	69051337	69051715	LTR|ERV1|Harlequin-int	+	chr4	69051475	69112838	STRG.30394.1	+	69051475,69088553,69089471,69098539,69102806,69107174,69108102,69112456	69051602,69088906,69089603,69098688,69102938,69107262,69108322,69112838	0.587591
SK_MEL_5	chr12	49986574	49986575	49986574	-	High_confidence	35	36	40	1.590855	4.663231	chr12	49986400	49986765	LTR|ERVL-MaLR|THE1C	-	chr12	49964583	49986936	STRG.77405.16	-	49964583,49965682,49986519	49964919,49965805,49986936	0.500000
SK_MEL_5	chrX	152697654	152697655	152697654	-	RAMPAGE_only	8	8	8	0.318171	2.500000	chrX	152697622	152697771	LINE|L1|L1MEh	+	chrX	152574749	152698714	STRG.119568.2	-	152574749,152635881,152697594,152698630	152574980,152635987,152697653,152698714	0.875000
SK_MEL_5	chr7	53811930	53811942	53811941	-	High_confidence	139	141	361	14.357464	6.666989	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.756233
SK_MEL_5	chr7	104804301	104804333	104804301	-	High_confidence	4	4	8	0.318171	2.500000	chr7	104804006	104804386	LTR|ERVL-MaLR|MLT1K	-	chr7	104796515	104804107	LHFPL3-AS1|ENST00000434579.6	-	104796515,104798336,104799817,104802838,104803955	104796949,104798407,104800069,104802963,104804107	0.875000
SK_MEL_5	chr2	29223817	29223823	29223817	-	High_confidence	9	9	23	0.914741	3.849224	chr2	29223782	29224196	LTR|ERVL|LTR16B2	-	chr2	29192773	29223900	ALK|ENST00000642122.1	-	29192773,29196769,29197541,29207170,29209785,29213983,29220705,29222343,29222516,29223341	29193922,29196860,29197676,29207272,29209878,29214081,29220835,29222408,29222607,29223900	0.956522
SK_MEL_5	chr18	42115581	42115587	42115586	-	High_confidence	190	212	300	11.931410	7.219990	chr18	42115418	42115780	LTR|ERVL-MaLR|THE1B	-	chr18	42104818	42115574	STRG.103172.2	-	42104818,42109196,42115502	42105303,42109315,42115574	0.583333
SK_MEL_5	chr18	46087042	46087066	46087042	-	High_confidence	21	22	47	1.869254	4.280926	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.808511
SK_MEL_5	chr9	109002239	109002246	109002243	-	RAMPAGE_only	125	125	319	12.687066	6.788106	chr9	109002078	109002410	LTR|ERVL-MaLR|MLT1A0	-	chr9	108942568	109013522	CTNNAL1|ENST00000374595.8	-	108942568,108942960,108943702,108943961,108948185,108952208,108952443,108955789,108965377,108970401,108972674,108976961,108979280,108983144,108984346,108990725,108992631,108999066,109013301	108942871,108943044,108943816,108944018,108948234,108952363,108952494,108955827,108965528,108970494,108972833,108977048,108979481,108983315,108984436,108990845,108992819,108999256,109013522	0.934169
SK_MEL_5	chr3	62950429	62950430	62950429	+	High_confidence	358	406	471	18.732314	7.080500	chr3	62950233	62950594	LTR|ERVL-MaLR|THE1B	+	chr3	62950457	63124995	STRG.23178.1	+	62950457,62952006,62985035,63106302,63113576,63118698,63122255,63123322,63124082	62950518,62952083,62985119,63106422,63113766,63118942,63122319,63123448,63124995	0.588110
SK_MEL_5	chr2	113915402	113915443	113915417	+	RAMPAGE_only	8	10	54	2.147654	4.849196	chr2	113915130	113915539	LTR|ERVL-MaLR|MLT1B	-	chr2	113927368	113934640	ACTR3|ENST00000489779.1	+	113927368,113931300,113934278	113927455,113931396,113934640	0.611111
SK_MEL_5	chr10	106286413	106286433	106286413	+	High_confidence	2	2	6	0.238628	2.584963	chr10	106286242	106286593	LTR|ERVL-MaLR|THE1B	+	chr10	106286474	106310925	STRG.68670.2	+	106286474,106309932,106310837	106286510,106310056,106310925	0.500000
SK_MEL_5	chr12	40800227	40800230	40800227	+	High_confidence	86	88	156	6.204333	4.920727	chr12	40800036	40800412	LTR|ERVL-MaLR|THE1D	+	chr12	40800241	40918732	STRG.76962.9	+	40800241,40908356,40910072,40918638	40800330,40908493,40910105,40918732	0.705128
SK_MEL_5	chr11	14337098	14337117	14337098	-	High_confidence	8	8	21	0.835199	3.368042	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.523810
SK_MEL_5	chr22	40668791	40668792	40668791	-	High_confidence	5	6	7	0.278400	2.521641	chr22	40668729	40668953	LTR|ERVL-MaLR|MSTA	+	chr22	40668101	40668805	STRG.114811.1	-	40668101	40668805	0.857143
SK_MEL_5	chr12	124366078	124366107	124366106	-	RAMPAGE_only	14	14	37	1.471541	4.009281	chr12	124366015	124366521	LINE|L1|L1MB8	+	chr12	124346592	124389351	STRG.80581.8	-	124346592,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124378236,124385744,124388684	124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362294,124363799,124372610,124378384,124385887,124389351	0.864865
SK_MEL_5	chr2	225770572	225770573	225770572	+	High_confidence	15	16	20	0.795427	3.984184	chr2	225770380	225770752	LTR|ERVL-MaLR|THE1B	+	chr2	225770605	225887282	STRG.19434.1	+	225770605,225884283,225886357	225770670,225884345,225887282	0.650000
SK_MEL_5	chr7	99410112	99410162	99410116	+	High_confidence	6	6	38	1.511312	4.271101	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.921053
SK_MEL_5	chr12	31121337	31121347	31121337	-	High_confidence	89	92	147	5.846391	4.299709	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31112238	31121218	STRG.76641.2	-	31112238,31112980,31114395,31114836,31116356,31117040,31121138	31112288,31113041,31114464,31114927,31116469,31117167,31121218	0.918367
SK_MEL_5	chr15	66354122	66354123	66354122	-	RAMPAGE_only	21	21	21	0.835199	3.784942	chr15	66354028	66355027	LINE|L2|L2a	+	chr15	66336383	66356685	TIPIN|ENST00000566524.5	-	66336383,66341149,66349059,66349314,66352128,66352814,66356638	66337181,66341356,66349123,66349437,66352207,66352955,66356685	1.000000
SK_MEL_5	chr13	105383250	105383260	105383250	-	RAMPAGE_only	9	10	20	0.795427	3.681881	chr13	105382665	105383251	LINE|L1|L1HS	-	chr13	105357435	105357935	STRG.84318.1	-	105357435	105357935	0.750000
SK_MEL_5	chr9	106278141	106278142	106278141	+	High_confidence	9	10	11	0.437485	2.921928	chr9	106277947	106278267	LINE|RTE-X|L4_C_Mam	+	chr9	106278246	106604795	STRG.63519.2	+	106278246,106279094,106500356,106558471,106588379,106603755	106278472,106279190,106500505,106558583,106588464,106604795	0.818182
SK_MEL_5	chr5	111338018	111338036	111338018	+	RAMPAGE_only	2	2	9	0.357942	2.750000	chr5	111337979	111338107	LINE|L1|L1ME1	-	chr5	111224236	111494886	CAMK4|NM_001744.5	+	111224236,111344023,111374849,111376859,111394709,111446685,111449128,111473310,111478380,111482784,111484025	111224644,111344102,111374912,111376942,111394782,111446776,111449203,111473386,111478507,111482937,111494886	0.555556
SK_MEL_5	chr13	77752584	77752615	77752614	+	RAMPAGE_only	3	3	8	0.318171	2.521641	chr13	77752477	77753007	LTR|ERVL|MLT2A2	-	chr13	77743104	77764227	SLAIN1|ENST00000358679.3	+	77743104,77744282,77746513,77753202,77760827,77763144	77743165,77744432,77746855,77753358,77761110,77764227	0.875000
SK_MEL_5	chr2	105079076	105079085	105079078	+	RAMPAGE_only	3	5	9	0.357942	2.947703	chr2	105079115	105079251	LINE|L1|L1M5	+	chr2	105092097	105099900	MRPS9|ENST00000472220.1	+	105092097,105093529,105097154,105099669	105092569,105093638,105097324,105099900	1.000000
SK_MEL_5	chr16	21303186	21303210	21303209	+	High_confidence	4	4	11	0.437485	2.913977	chr16	21302894	21303245	LTR|ERVL-MaLR|THE1B	-	chr16	21303246	21318591	CRYM-AS1|ENST00000444326.1	+	21303246,21315883,21316861	21303457,21315970,21318591	0.727273
SK_MEL_5	chr4	88447452	88447460	88447452	-	RAMPAGE_only	54	59	110	4.374850	4.723840	chr4	88447282	88447570	LTR|ERVL-MaLR|THE1B	-	chr4	88415597	88419832	STRG.31009.1	-	88415597,88419301,88419573	88416079,88419408,88419832	0.936364
SK_MEL_5	chr17	42814894	42814918	42814917	-	High_confidence	5	5	16	0.636342	3.452820	chr17	42814830	42815625	LINE|L2|L2b	+	chr17	42810309	42814673	BECN1|ENST00000588276.5	-	42810309,42814523	42810928,42814673	0.687500
SK_MEL_5	chr6	56839178	56839181	56839178	-	RAMPAGE_only	10	10	19	0.755656	3.836592	chr6	56839131	56839380	LTR|ERVL-MaLR|MLT1J	+	chr6	56670487	56843146	DST|ENST00000521821.1	-	56670487,56699652,56701887,56704279,56735227,56843054	56670807,56699745,56701965,56704369,56735289,56843146	0.736842
SK_MEL_5	chr16	2205756	2205851	2205823	+	High_confidence	68	70	903	35.913545	5.717527	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.965670
SK_MEL_5	chr5	97088999	97089000	97088999	+	High_confidence	9	11	13	0.517028	3.238901	chr5	97088919	97089287	LTR|ERVL-MaLR|THE1B	+	chr5	97089074	97437217	LIX1-AS1|ENST00000504578.2	+	97089074,97101758,97103025,97183007,97183504,97431743,97436552	97089204,97102132,97103094,97183240,97183669,97431900,97437217	0.923077
SK_MEL_5	chr12	100592167	100592168	100592167	+	RAMPAGE_only	65	66	69	2.744224	4.360228	chr12	100592089	100592217	LINE|L1|L1ME3C	-	chr12	100573808	100600511	GAS2L3|ENST00000550295.1	+	100573808,100591735,100592373,100594874,100600381	100574000,100591856,100592449,100594922,100600511	0.826087
SK_MEL_5	chr5	140700445	140700452	140700445	+	High_confidence	1910	2146	3318	131.961396	5.019249	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.988849
SK_MEL_5	chrX	153356655	153356693	153356655	+	RAMPAGE_only	6	8	24	0.954513	4.084963	chrX	153356470	153356818	LTR|ERVL-MaLR|THE1B	+	chrX	153352028	153360110	ZNF275|ENST00000438239.1	+	153352028,153357190,153359698	153352141,153357256,153360110	0.708333
SK_MEL_5	chr2	191323086	191323089	191323088	+	RAMPAGE_only	23	31	35	1.391998	4.498940	chr2	191322769	191323409	LTR|ERV1|MER41B	-	chr2	191276884	191425389	MYO1B|ENST00000392316.5	+	191276884,191296110,191329934,191341460,191346235,191350161,191360630,191362267,191363727,191364157,191369541,191370226,191381461,191383279,191385883,191387223,191390291,191392107,191393072,191396428,191400381,191402631,191408114,191409043,191411065,191414047,191414516,191416114,191423836	191277030,191296226,191330029,191341565,191346282,191350225,191360729,191362371,191363875,191364276,191369628,191370292,191381566,191383342,191386084,191387450,191390492,191392201,191393222,191396497,191400468,191402718,191408189,191409178,191411172,191414180,191414669,191416242,191425389	0.942857
SK_MEL_5	chr2	88613991	88613998	88613997	-	RAMPAGE_only	4	4	8	0.318171	2.521641	chr2	88613982	88615337	LINE|L2|L2a	+	chr2	88556739	88624929	EIF2AK3|NM_001313915.1	-	88556739,88558916,88562288,88570873,88574665,88576553,88579517,88583429,88585840,88587981,88588760,88590442,88590817,88593271,88595468,88613723,88624745	88557936,88558979,88562390,88571041,88575446,88576703,88579640,88583542,88586061,88588104,88588901,88590605,88591052,88593405,88595663,88613853,88624929	0.875000
SK_MEL_5	chr1	40067229	40067250	40067240	+	High_confidence	7	9	47	1.869254	3.855539	chr1	40067175	40067278	LINE|L2|L2	-	chr1	40067269	40071581	CAP1|ENST00000479759.5	+	40067269,40067539,40069689,40070158,40070429,40070835,40071449	40067311,40067717,40069874,40070282,40070512,40070979,40071581	0.978723
SK_MEL_5	chr12	15688530	15688531	15688530	+	High_confidence	255	256	312	12.408667	5.662895	chr12	15688313	15689073	LTR|ERV1|LTR1A2	+	chr12	15688542	15689607	STRG.75909.1	+	15688542	15689607	0.897436
SK_MEL_5	chr22	29545143	29545144	29545143	-	High_confidence	72	78	88	3.499880	4.222541	chr22	29544984	29545330	LTR|ERVL-MaLR|THE1A	-	chr22	29539337	29545144	THOC5|ENST00000455450.5	-	29539337,29542858,29543428,29544459,29545060	29539476,29542956,29543542,29544603,29545144	0.954545
SK_MEL_5	chr4	70050896	70050928	70050909	+	High_confidence	5	5	13	0.517028	3.251629	chr4	70050765	70050920	LINE|L1|L1PA8	-	chr4	70050441	70058841	HTN1|ENST00000610341.1	+	70050441,70053063,70054321,70054420,70055497,70058579	70050495,70053127,70054342,70054450,70055602,70058841	0.923077
SK_MEL_5	chr18	41632197	41632206	41632197	-	High_confidence	4	5	10	0.397714	2.721928	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41521337	41632124	KC6|ENST00000599934.1	-	41521337,41525354,41564798,41631999	41521496,41525526,41564898,41632124	0.600000
SK_MEL_5	chr4	170979961	170979963	170979962	+	High_confidence	9	13	18	0.715885	3.572469	chr4	170979958	170980158	LINE|L1|L1PB1	-	chr4	170979300	170994416	STRG.32817.1	+	170979300,170993736	170979383,170994416	0.944444
SK_MEL_5	chr8	99891976	99892057	99892056	-	RAMPAGE_only	24	24	108	4.295308	5.024867	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.962963
SK_MEL_5	chr12	28826006	28826017	28826006	-	High_confidence	9	10	16	0.636342	3.625000	chr12	28825676	28826170	LTR|ERVL|MLT2B3	-	chr12	28821974	28825831	AC022081.1|ENST00000537327.1	-	28821974,28825697	28822273,28825831	1.000000
SK_MEL_5	chr13	45379794	45379816	45379801	+	High_confidence	15	24	62	2.465825	4.898004	chr13	45379416	45380004	LTR|ERV1|HERVE-int	-	chr13	45379283	45391157	TPT1-AS1|ENST00000519454.5	+	45379283,45379925,45383090,45383759,45389734,45390757,45391031	45379335,45380001,45383235,45383838,45389820,45390902,45391157	0.887097
SK_MEL_5	chr1	42628680	42628682	42628680	+	High_confidence	90	136	141	5.607763	5.417556	chr1	42628486	42628840	LTR|ERVL-MaLR|THE1A	+	chr1	42628691	42654284	STRG.2580.1	+	42628691,42630403,42637236,42642472,42644692,42646134,42653375,42653817	42628764,42630525,42637378,42642609,42644807,42646317,42653443,42654284	0.971631
SK_MEL_5	chr14	102246188	102246236	102246218	-	High_confidence	49	56	221	8.789472	5.727059	chr14	102246199	102246391	LTR|ERV1|HERVFH21-int	+	chr14	102229072	102246247	MOK|ENST00000520266.5	-	102229072,102233687,102246056	102229657,102233789,102246247	0.606335
SK_MEL_5	chr22	35506145	35506150	35506145	-	High_confidence	56	61	96	3.818051	5.539865	chr22	35505918	35506359	LINE|L1|L1ME1	-	chr22	35501860	35506142	STRG.114352.4	-	35501860,35505880	35503739,35506142	0.927083
SK_MEL_5	chr2	138403624	138403625	138403624	-	RAMPAGE_only	9	9	10	0.397714	2.725481	chr2	138403570	138404051	LTR|ERVK|LTR3B_	+	chr2	138348117	138366969	STRG.16184.1	-	138348117,138366862	138348749,138366969	0.600000
SK_MEL_5	chr11	89589602	89589613	89589603	-	High_confidence	3	5	11	0.437485	2.721928	chr11	89589298	89589739	LTR|ERVL-MaLR|MLT1G3	+	chr11	89324352	89589611	NOX4|NM_001143837.1	-	89324352,89335844,89337446,89340062,89342073,89354961,89373431,89400016,89400214,89402325,89421901,89432783,89440687,89444134,89449439,89451784,89490457,89492120,89497996,89546636,89589439	89326876,89335945,89337515,89340171,89342193,89355043,89373492,89400079,89400379,89402542,89421982,89432856,89440715,89444232,89449524,89451895,89490553,89492219,89498187,89546695,89589611	0.545455
SK_MEL_5	chr2	55618850	55618870	55618850	-	High_confidence	5	6	18	0.715885	3.499228	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.833333
SK_MEL_5	chrX	21770648	21770745	21770742	-	High_confidence	31	47	198	7.874731	4.812261	chrX	21770311	21772190	LINE|L1|L1PB1	+	chrX	21705985	21770877	STRG.116257.1	-	21705985,21737548,21743749,21754245,21757941,21759048,21761207,21770498	21706394,21737697,21743836,21754302,21758128,21759168,21761942,21770877	0.954545
SK_MEL_5	chr11	78469999	78470060	78469999	-	RAMPAGE_only	64	76	148	5.886162	3.762648	chr11	78469641	78470190	LINE|L2|L2a	-	chr11	78436188	78443759	NARS2|ENST00000529771.1	-	78436188,78443660	78436814,78443759	0.912162
SK_MEL_5	chr4	47952947	47952948	47952947	-	High_confidence	29	29	40	1.590855	4.515312	chr4	47952778	47953143	LTR|ERVL-MaLR|THE1B	-	chr4	47942916	47952689	CNGA1|ENST00000506118.1	-	47942916,47943370,47949832,47951352,47952582	47943288,47943412,47949895,47951469,47952689	1.000000
SK_MEL_5	chr17	43124971	43124972	43124971	-	High_confidence	38	40	49	1.948797	4.483569	chr17	43124781	43124980	SINE|Alu|AluSx	-	chr17	43094111	43125300	BRCA1|ENST00000492859.5	-	43094111,43095845,43097243,43099774,43104121,43104867,43106455,43110464,43115725,43124016,43125270	43094860,43095922,43097289,43099880,43104261,43104956,43106533,43110580,43115779,43124115,43125300	0.897959
SK_MEL_5	chr13	94444908	94444935	94444934	-	RAMPAGE_only	3	4	13	0.517028	2.815072	chr13	94444775	94444967	LINE|L2|L2c	+	chr13	94439486	94468770	DCT|ENST00000483392.6	-	94439486,94443435,94444362,94445688,94460090,94462009,94465632,94466557,94468745	94440076,94443637,94444436,94445761,94460226,94462189,94465799,94466658,94468770	0.538462
SK_MEL_5	chr5	34918368	34918371	34918370	+	RAMPAGE_only	5	8	11	0.437485	3.095795	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	1.000000
SK_MEL_5	chr19	9140393	9140428	9140427	+	High_confidence	47	51	212	8.431530	6.010580	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.858491
SK_MEL_5	chr11	21752852	21752853	21752852	-	High_confidence	18	18	19	0.755656	3.419382	chr11	21752440	21753682	LTR|ERV1|LTR12C	-	chr11	21734497	21752835	STRG.70706.1	-	21734497,21746514,21752514	21734670,21746641,21752835	0.842105
SK_MEL_5	chr5	73967618	73967619	73967618	+	RAMPAGE_only	11	15	16	0.636342	3.625000	chr5	73967427	73967814	LTR|ERVL-MaLR|MSTA	+	chr5	73976844	73982529	STRG.36360.1	+	73976844,73982364	73976915,73982529	0.562500
SK_MEL_5	chr14	75847802	75847825	75847824	+	High_confidence	151	172	262	10.420098	3.717009	chr14	75847754	75847919	DNA|hAT-Charlie|MER5A	-	chr14	75847833	75954828	STRG.87384.10	+	75847833,75863666,75882684,75902141,75906554,75954423	75847918,75863862,75882902,75902224,75906683,75954828	0.988550
SK_MEL_5	chr7	47992156	47992161	47992160	-	High_confidence	3	3	7	0.278400	2.584963	chr7	47992098	47992580	LINE|L1|HAL1	+	chr7	47987150	47992188	STRG.49791.1	-	47987150,47988787,47992051	47987449,47988880,47992188	0.571429
SK_MEL_5	chr12	94706495	94706498	94706497	-	High_confidence	62	82	97	3.857823	4.946935	chr12	94706338	94706693	LTR|ERVL-MaLR|THE1B	-	chr12	94705388	94706488	STRG.79155.1	-	94705388,94706421	94705863,94706488	0.577320
SK_MEL_5	chr17	18917425	18917435	18917429	+	RAMPAGE_only	14	18	51	2.028340	4.461162	chr17	18917394	18917546	SINE|Alu|AluSz	-	chr17	18928267	18931268	PRPSAP2|ENST00000466106.1	+	18928267,18930539	18928957,18931268	0.941176
SK_MEL_5	chr4	109251535	109251614	109251578	-	High_confidence	24	30	171	6.800904	6.270914	chr4	109250842	109253030	LTR|ERVL|ERVL-B4-int	-	chr4	108824173	109251599	STRG.31474.2	-	108824173,108825195,108827134,108832379,108834354,108838097,108841694,108844518,108845188,108846138,108848758,108852235,108852901,108859655,108860926,108862500,108863318,108869087,108884177,108889220,108889700,108896666,108899153,108901118,108918171,108920577,108937807,108940538,108942208,108974366,108974532,109010357,109048167,109050134,109251496	108824227,108825222,108827188,108832433,108834390,108838178,108841721,108844569,108845251,108846219,108848803,108852280,108852925,108859733,108860971,108862545,108863387,108869150,108884222,108889256,108889733,108896711,108899180,108901172,108918216,108920604,108937843,108940646,108942268,108974393,108974559,109010375,109048175,109050179,109251599	0.660819
SK_MEL_5	chr19	48868613	48868666	48868613	-	High_confidence	131	152	798	31.737551	7.237869	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.993734
SK_MEL_5	chr2	73736756	73736757	73736756	-	High_confidence	10	11	12	0.477256	2.732159	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73730584	73737335	STRG.13686.10	-	73730584,73732162,73734428,73737301	73730736,73732285,73734588,73737335	0.916667
SK_MEL_5	chr11	22318076	22318077	22318076	-	High_confidence	4	5	6	0.238628	2.584963	chr11	22317577	22318319	LTR|ERV1|LTR17	-	chr11	22255724	22317995	STRG.70727.2	-	22255724,22262168,22281541,22283729,22301279,22305656,22307236,22317546	22257257,22262254,22281643,22283824,22301399,22305807,22307374,22317995	1.000000
SK_MEL_5	chr15	69422823	69422875	69422823	+	High_confidence	4	4	22	0.874970	3.884184	chr15	69422804	69423097	SINE|Alu|AluSx	-	chr15	69422899	69447918	KIF23|ENST00000558585.5	+	69422899,69423158,69425281,69426069,69426335,69429110,69435482,69435651,69436137,69436563,69438247,69439903,69440307,69444789,69446008,69446282,69446870,69447791	69423034,69423329,69425323,69426182,69426457,69429213,69435562,69435771,69436261,69436722,69438405,69440077,69440487,69445041,69446091,69446364,69446941,69447918	0.863636
SK_MEL_5	chr12	110172748	110172800	110172788	+	High_confidence	28	43	156	6.204333	5.914877	chr12	110172360	110173979	Retroposon|SVA|SVA_D	+	chr12	110171906	110218560	STRG.79899.5	+	110171906,110180421,110190919,110192616,110203863,110205442,110205594,110209170,110218043	110172086,110180571,110191048,110192706,110203950,110205514,110205680,110209216,110218560	0.987179
SK_MEL_5	chr12	8681676	8681677	8681676	+	High_confidence	8	8	8	0.318171	3.000000	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	1.000000
SK_MEL_5	chr12	1166314	1166317	1166314	+	RAMPAGE_only	4	4	12	0.477256	3.022055	chr12	1166120	1166479	LTR|ERVL-MaLR|THE1B	+	chr12	1083572	1244956	ERC1|ENST00000536573.6	+	1083572,1104749,1110191,1112214,1115865,1141619,1180539,1181924,1183280,1189858,1236768,1244542	1083580,1104824,1110347,1112307,1116033,1141787,1180677,1182065,1183421,1190052,1236904,1244956	0.750000
SK_MEL_5	chr14	45715967	45715968	45715967	-	High_confidence	19	19	20	0.795427	3.536887	chr14	45715770	45716282	LTR|ERVK|LTR3B_	-	chr14	45706271	45715952	LINC02303|ENST00000555442.1	-	45706271,45711898,45715349	45706502,45711953,45715952	0.900000
SK_MEL_5	chr6	10434548	10434590	10434589	-	High_confidence	4	9	16	0.636342	3.323231	chr6	10434400	10434600	SINE|MIR|MIRb	+	chr6	10429708	10434495	LINC00518|ENST00000472178.1	-	10429708,10434247	10430313,10434495	0.875000
SK_MEL_5	chr5	33297999	33298003	33297999	-	High_confidence	12	12	22	0.874970	3.272804	chr5	33297738	33298188	LTR|ERV1|MER48	-	chr5	33023054	33297910	AC010343.3|ENST00000510327.1	-	33023054,33263499,33297731	33023327,33263666,33297910	0.863636
SK_MEL_5	chr6	3195732	3195779	3195772	-	High_confidence	89	92	283	11.255297	5.997991	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.918728
SK_MEL_5	chr13	103464532	103464546	103464532	+	High_confidence	94	99	189	7.516788	5.654216	chr13	103464432	103464730	SINE|Alu|AluY	-	chr13	103464547	103534190	STRG.84348.1	+	103464547,103532670	103464956,103534190	0.597884
SK_MEL_5	chr12	9569117	9569201	9569153	+	RAMPAGE_only	37	38	234	9.306500	3.976428	chr12	9568603	9569205	LTR|ERV1|HERVE-int	-	chr12	9570713	9576264	STRG.75601.4	+	9570713,9571460,9573002,9573313,9574846,9575642,9576117	9570892,9571573,9573093,9573534,9574949,9575717,9576264	0.995726
SK_MEL_5	chr9	15852148	15852155	15852148	+	RAMPAGE_only	3	4	11	0.437485	2.846439	chr9	15851616	15856154	LINE|L1|L1MB5	-	chr9	15850225	15979906	STRG.60683.3	+	15850225,15920269,15971608	15850311,15920422,15979906	0.545455
SK_MEL_5	chr14	67821095	67821160	67821095	+	High_confidence	9	9	29	1.153370	4.142295	chr14	67821104	67821321	LINE|L2|L2c	+	chr14	67820775	68541257	STRG.86966.6	+	67820775,67823541,67825463,67835079,67865002,67885868,67887020,68291883,68411423,68468171,68540199	67821874,67823627,67825577,67835196,67865139,67885988,67887204,68291980,68411527,68468250,68541257	0.965517
SK_MEL_5	chr12	9567425	9567445	9567425	+	RAMPAGE_only	131	159	457	18.175515	4.562241	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9564589	9576264	STRG.75601.3	+	9564589,9567489,9569057,9570765,9571460,9573002,9573465,9574846,9575642,9576117	9565303,9567567,9569202,9570892,9571573,9573093,9573534,9574949,9575717,9576264	0.997812
SK_MEL_5	chr6	28985709	28985710	28985709	+	High_confidence	4	4	7	0.278400	2.521641	chr6	28985713	28985796	SINE|Alu|AluJo	+	chr6	28985822	28986412	STRG.42185.1	+	28985822,28986041,28986312	28985884,28986232,28986412	0.714286
SK_MEL_5	chr8	3183046	3183085	3183077	-	High_confidence	67	75	294	11.692782	5.066381	chr8	3182937	3183057	SINE|Alu|AluY	-	chr8	2935412	3183146	STRG.54913.1	-	2935412,2942471,2949298,2950230,2951113,2954223,2955588,2957695,2961140,2962465,2963221,2965774,2966569,2973116,2974450,2978611,2998010,2999957,3018476,3029318,3052461,3087096,3091515,3096848,3106527,3107717,3108602,3110157,3118398,3142464,3151396,3157896,3162158,3181109,3182990	2938744,2942604,2949386,2950343,2951275,2954268,2955768,2957807,2961214,2962639,2963395,2965954,2966746,2973299,2974624,2978800,2998184,3000131,3018650,3029513,3052647,3087285,3091662,3097037,3106641,3107798,3108748,3110335,3118587,3142674,3151513,3157966,3162277,3181214,3183146	0.959184
SK_MEL_5	chr16	21619646	21619704	21619703	+	RAMPAGE_only	2	2	10	0.397714	2.646439	chr16	21619427	21619734	SINE|Alu|AluSx3	-	chr16	21599793	21657473	METTL9|ENST00000615720.4	+	21599793,21599882,21612644,21617864,21624930,21655226	21599834,21599898,21612835,21618074,21625115,21657473	0.800000
SK_MEL_5	chr3	184908402	184908424	184908406	+	High_confidence	9	9	43	1.710169	4.460921	chr3	184908278	184909120	LTR|ERV1|LTR27B	-	chr3	184908374	184926646	STRG.27177.7	+	184908374,184913518,184914980,184915354,184920126,184924861,184926593	184908746,184913561,184915053,184915474,184920198,184924981,184926646	1.000000
SK_MEL_5	chr7	101217578	101217599	101217578	-	High_confidence	44	52	184	7.317932	5.965231	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.994565
SK_MEL_5	chr11	125874376	125874412	125874376	-	High_confidence	27	29	193	7.675874	4.105574	chr11	125874041	125875038	LTR|ERV1|HUERS-P3-int	+	chr11	125873030	125874398	AP000842.3|ENST00000564354.1	-	125873030,125874245	125873685,125874398	0.839378
SK_MEL_5	chr17	59234289	59234326	59234289	+	RAMPAGE_only	8	8	40	1.590855	4.009135	chr17	59234099	59234367	SINE|Alu|AluY	+	chr17	59220561	59273021	GDPD1|ENST00000581276.5	+	59220561,59234491,59245413,59248739,59257121,59257750,59267040,59270935,59272784	59220751,59234534,59245549,59248785,59257240,59257840,59267174,59270995,59273021	0.950000
SK_MEL_5	chr7	25839075	25839076	25839075	+	RAMPAGE_only	23	23	23	0.914741	3.914866	chr7	25838942	25839178	LTR|ERVL-MaLR|MLT1I	+	chr7	25846726	25848063	STRG.48673.1	+	25846726	25848063	0.739130
SK_MEL_5	chr3	32089325	32089326	32089325	-	High_confidence	260	265	290	11.533696	5.358687	chr3	32089211	32089604	LTR|ERVK|LTR3B	-	chr3	31748013	32089354	STRG.21465.4	-	31748013,31830039,31876432,31879654,32046490,32088987	31748120,31830231,31876512,31879830,32046603,32089354	0.775862
SK_MEL_5	chr12	10363964	10363974	10363964	+	High_confidence	6	6	11	0.437485	2.845351	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.727273
SK_MEL_5	chr5	118502911	118502912	118502911	-	RAMPAGE_only	5	6	8	0.318171	2.750000	chr5	118500000	118502912	LINE|L1|L1P1	-	chr5	118350965	118562117	HRAT56|NR_104610.1	-	118350965,118468301,118469080,118472062,118472848,118474371,118510887,118521171,118523648,118561920	118351507,118468434,118469148,118472189,118472906,118474427,118511064,118522846,118523814,118562117	0.625000
SK_MEL_5	chr11	112147282	112147283	112147282	-	RAMPAGE_only	6	6	6	0.238628	2.584963	chr11	112147229	112147299	DNA|hAT-Tip100|Arthur1A	+	chr11	112084799	112086798	TIMM8B|ENST00000509359.6	-	112084799,112085977,112086639	112085462,112086310,112086798	1.000000
SK_MEL_5	chr2	74918412	74918438	74918412	+	High_confidence	11	12	29	1.153370	3.974890	chr2	74917679	74918502	LINE|L2|L2a	-	chr2	74918147	74942670	STRG.13871.2	+	74918147,74931417,74932660,74938307	74918459,74931536,74932790,74942670	0.827586
SK_MEL_5	chr13	98180421	98180422	98180421	+	RAMPAGE_only	45	47	62	2.465825	4.475970	chr13	98180072	98180468	LTR|ERVL-MaLR|MSTB	-	chr13	98177816	98384844	FARP1|ENST00000598389.5	+	98177816,98213219,98343761,98365394,98368116,98377820,98384729	98177929,98213413,98343866,98365437,98368195,98377918,98384844	0.919355
SK_MEL_5	chr13	43057883	43057912	43057883	+	RAMPAGE_only	7	7	16	0.636342	2.899397	chr13	43056898	43059152	LINE|L1|L1PB1	-	chr13	43023553	43828600	STRG.82066.1	+	43023553,43065685,43068929,43078611,43085767,43107177,43828571	43023734,43065737,43069003,43078688,43085838,43107718,43828600	0.687500
SK_MEL_5	chr2	20596466	20596469	20596468	+	High_confidence	12	20	22	0.874970	3.621928	chr2	20596294	20596659	LTR|ERVL-MaLR|MLT1A0	+	chr2	20597359	20597659	STRG.11317.1	+	20597359	20597659	0.500000
SK_MEL_5	chr1	224660242	224660276	224660244	-	RAMPAGE_only	7	12	35	1.391998	4.550293	chr1	224660104	224660436	LTR|ERVL-MaLR|THE1B	-	chr1	224657322	224657648	STRG.9397.1	-	224657322	224657648	0.771429
SK_MEL_5	chr2	81481842	81481856	81481842	+	High_confidence	2	2	10	0.397714	2.725481	chr2	81481147	81482372	LTR|ERV1|LTR2752	-	chr2	81481740	81570850	STRG.14175.2	+	81481740,81548617,81570321	81482104,81548747,81570850	0.700000
SK_MEL_5	chr8	80761054	80761087	80761071	+	High_confidence	8	8	20	0.795427	3.446439	chr8	80761090	80761332	LTR|ERVL-MaLR|MLT1A1	+	chr8	80761021	80774148	STRG.57420.1	+	80761021,80768273,80774072	80761255,80768457,80774148	0.650000
SK_MEL_5	chr21	36354956	36354973	36354956	-	High_confidence	7	7	27	1.073827	4.208410	chr21	36354600	36355667	DNA|TcMar-Tigger|Tigger2	-	chr21	36354339	36355029	STRG.112335.1	-	36354339	36355029	0.629630
SK_MEL_5	chr1	25003793	25003817	25003810	+	High_confidence	12	12	23	0.914741	3.689704	chr1	25003555	25004064	LTR|ERVL-MaLR|MLT1E1A	+	chr1	25003802	25004355	STRG.1379.1	+	25003802,25004087	25003901,25004355	0.521739
SK_MEL_5	chr21	33968463	33968481	33968463	-	High_confidence	4	4	17	0.676113	3.327820	chr21	33968191	33968612	LTR|ERVL-MaLR|MLT1J	-	chr21	33967100	33968573	AP000569.1|ENST00000607953.1	-	33967100,33968232	33967350,33968573	0.941176
SK_MEL_5	chr1	194347918	194347920	194347919	+	High_confidence	78	92	114	4.533936	5.474080	chr1	194347724	194348076	LTR|ERVL-MaLR|THE1A	+	chr1	194347925	194351934	STRG.8083.2	+	194347925,194350924	194348000,194351934	0.710526
SK_MEL_5	chr9	114562001	114562006	114562005	+	RAMPAGE_only	4	4	8	0.318171	2.521641	chr9	114561989	114562028	LTR|ERVL-MaLR|MLT1M	-	chr9	114587713	114598872	ATP6V1G1|NM_004888.3	+	114587713,114592551,114597569	114587920,114592652,114598872	0.500000
SK_MEL_5	chr9	72874127	72874135	72874134	-	High_confidence	184	252	638	25.374132	6.204077	chr9	72873937	72874322	LTR|ERVL-MaLR|MSTA	-	chr9	72871727	72874109	LINC01474|NR_121120.1	-	72871727,72872108,72873026,72874015	72872020,72872231,72873155,72874109	0.992163
SK_MEL_5	chr1	28506430	28506445	28506444	+	High_confidence	6	6	11	0.437485	2.594907	chr1	28506187	28506484	SINE|Alu|AluSx	-	chr1	28506350	28509633	SNHG3|ENST00000437681.1	+	28506350,28508829	28508160,28509633	0.636364
SK_MEL_5	chr7	2628267	2628315	2628267	-	RAMPAGE_only	20	21	68	2.704453	5.179015	chr7	2628241	2628599	LTR|ERVL-MaLR|MLT1C	-	chr7	2614654	2617803	STRG.47642.2	-	2614654,2617649	2614976,2617803	0.808824
SK_MEL_5	chr4	184768350	184768360	184768350	-	RAMPAGE_only	7	8	13	0.517028	2.625815	chr4	184768056	184768306	SINE|MIR|MIRc	-	chr4	184755600	184766702	ACSL1|ENST00000503407.5	-	184755600,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621	184757265,184757706,184757920,184760500,184762493,184763255,184764925,184765986,184766702	0.692308
SK_MEL_5	chr11	7677296	7677342	7677296	-	High_confidence	3	3	20	0.795427	3.195296	chr11	7677065	7677444	LTR|ERVL-MaLR|THE1C	-	chr11	7669204	7677222	CYB5R2|ENST00000524608.5	-	7669204,7669624,7672450,7672747,7674225,7677147	7669334,7669731,7672523,7672891,7674493,7677222	0.900000
SK_MEL_5	chr13	101959108	101959168	101959108	-	High_confidence	110	134	348	13.840436	6.520866	chr13	101959062	101959301	DNA|hAT-Charlie|MER1B	-	chr13	101722830	101959155	STRG.84270.3	-	101722830,101726611,101868724,101875185,101959031	101722967,101726810,101868828,101875296,101959155	0.813218
SK_MEL_5	chr7	99358558	99358775	99358654	+	High_confidence	28	45	251	9.982613	5.985690	chr7	99358536	99358830	SINE|Alu|AluSp	-	chr7	99358665	99366214	ARPC1A|ENST00000463009.1	+	99358665,99359544,99363542,99365890	99358775,99359738,99363633,99366214	0.940239
SK_MEL_5	chr2	43553065	43553087	43553075	-	High_confidence	7	7	55	2.187425	4.951293	chr2	43552671	43553265	LINE|L1|L1MB8	-	chr2	43231206	43553071	STRG.12338.5	-	43231206,43232712,43279764,43286907,43291695,43292103,43292833,43320445,43344121,43397970,43428099,43430212,43485233,43498832,43505621,43508647,43527878,43541158,43549209,43551788,43552203,43552832	43231343,43232882,43279896,43287061,43291768,43292222,43293213,43320540,43344237,43398139,43428231,43430302,43485325,43498955,43505735,43508780,43527988,43541316,43549368,43551925,43552339,43553071	0.890909
SK_MEL_5	chr3	112302447	112302484	112302483	+	High_confidence	38	43	83	3.301023	5.373759	chr3	112302478	112303209	LTR|ERV1|HERV3-int	+	chr3	112302442	112307699	STRG.24419.1	+	112302442,112306913	112302714,112307699	0.903614
SK_MEL_5	chr1	221998790	221998793	221998792	+	High_confidence	68	98	128	5.090735	5.788747	chr1	221998590	221998960	LTR|ERVL-MaLR|THE1C	+	chr1	221998582	222004201	STRG.9236.1	+	221998582	222004201	0.687500
SK_MEL_5	chr2	178101404	178101440	178101429	-	High_confidence	18	18	45	1.789712	4.719522	chr2	178101069	178101775	LTR|ERVL|MER21C	-	chr2	178100731	178101424	STRG.17638.1	-	178100731	178101424	0.577778
SK_MEL_5	chr5	997305	997334	997313	-	High_confidence	9	10	54	2.147654	4.513488	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.944444
SK_MEL_5	chr13	60409956	60409968	60409956	+	High_confidence	6	6	14	0.556799	3.182006	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60410064	60485899	STRG.82991.8	+	60410064,60439687,60444686,60460379,60467237,60483774,60485798	60410164,60439772,60444748,60460540,60467379,60483846,60485899	1.000000
SK_MEL_5	chr7	134432523	134432534	134432523	-	High_confidence	2	2	7	0.278400	2.521641	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	1.000000
SK_MEL_5	chr4	73806950	73806973	73806956	-	RAMPAGE_only	7	11	30	1.193141	3.281194	chr4	73805101	73807113	LINE|L1|L1PA15	+	chr4	73777647	73782984	STRG.30494.1	-	73777647,73782859	73777730,73782984	0.633333
SK_MEL_5	chr16	8870928	8870945	8870928	-	RAMPAGE_only	3	3	8	0.318171	2.521641	chr16	8870671	8870950	SINE|Alu|AluJb	+	chr16	8852941	8869012	CARHSP1|NM_014316.3	-	8852941,8858349,8859170,8868965	8855326,8858472,8859335,8869012	0.875000
SK_MEL_5	chr5	12574832	12574857	12574842	+	High_confidence	216	216	795	31.618237	6.050696	chr5	12573943	12575033	LTR|ERV1|LTR12C	-	chr5	12574856	12655687	LINC01194|ENST00000505877.5	+	12574856,12595696,12654646	12575052,12595778,12655687	0.749686
SK_MEL_5	chr6	158303374	158303375	158303374	-	RAMPAGE_only	12	12	14	0.556799	3.235926	chr6	158303244	158303618	LTR|ERVK|MER11A	-	chr6	158298377	158298612	STRG.46921.1	-	158298377	158298612	0.642857
SK_MEL_5	chr17	51372736	51372785	51372736	-	High_confidence	12	15	53	2.107882	4.233060	chr17	51372514	51372940	LTR|ERVL-MaLR|MLT1J1	-	chr17	51372127	51372723	STRG.99904.1	-	51372127	51372723	0.867925
SK_MEL_5	chr1	66564317	66564375	66564363	-	RAMPAGE_only	18	23	137	5.448677	6.274747	chr1	66564224	66564322	SINE|MIR|MIRc	-	chr1	66456682	66480893	STRG.3664.3	-	66456682,66476863,66479049,66480225	66457247,66476967,66479124,66480893	0.503650
SK_MEL_5	chr14	102235011	102235037	102235011	-	High_confidence	8	8	45	1.789712	4.550928	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102229432	102235063	MOK|ENST00000522537.5	-	102229432,102232534,102233687,102234956	102229657,102232708,102233789,102235063	0.733333
SK_MEL_5	chr2	55615604	55615666	55615604	-	RAMPAGE_only	4	4	23	0.914741	3.463281	chr2	55615580	55615882	SINE|Alu|AluSc	+	chr2	55598697	55616617	PPP4R3B|ENST00000470801.1	-	55598697,55603977,55615450,55616517	55599039,55604076,55615506,55616617	0.782609
SK_MEL_5	chr6	169654701	169654718	169654701	-	RAMPAGE_only	7	8	14	0.556799	2.873141	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169457211	169649233	WDR27|ENST00000479310.5	-	169457211,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197	169457634,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649233	0.714286
SK_MEL_5	chr2	43552873	43552899	43552883	-	High_confidence	9	9	28	1.113598	4.039149	chr2	43552671	43553265	LINE|L1|L1MB8	-	chr2	43231206	43553071	STRG.12338.5	-	43231206,43232712,43279764,43286907,43291695,43292103,43292833,43320445,43344121,43397970,43428099,43430212,43485233,43498832,43505621,43508647,43527878,43541158,43549209,43551788,43552203,43552832	43231343,43232882,43279896,43287061,43291768,43292222,43293213,43320540,43344237,43398139,43428231,43430302,43485325,43498955,43505735,43508780,43527988,43541316,43549368,43551925,43552339,43553071	0.821429
SK_MEL_5	chr1	67207615	67207616	67207615	+	High_confidence	10	10	10	0.397714	3.121928	chr1	67207421	67207774	LTR|ERVL-MaLR|THE1A	+	chr1	67207615	67259248	IL23R|ENST00000425614.3	+	67207615,67219573,67236712,67240178,67255836,67258477	67207698,67219730,67236802,67240281,67255927,67259248	0.500000
SK_MEL_5	chr11	65499537	65499668	65499637	+	High_confidence	10	12	106	4.215765	5.987565	chr11	65499661	65499925	LINE|L1|L1M4c	+	chr11	65499041	65504463	STRG.72312.14	+	65499041,65503120	65502393,65504463	0.981132
SK_MEL_5	chr1	238486034	238486037	238486036	-	High_confidence	5	9	14	0.556799	3.039149	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.714286
SK_MEL_5	chr14	89944251	89944252	89944251	-	RAMPAGE_only	8	10	10	0.397714	3.321928	chr14	89944085	89944442	LTR|ERVL-MaLR|THE1B	-	chr14	89797156	89952605	EFCAB11|ENST00000553871.5	-	89797156,89931540,89932525,89950096,89952388	89797324,89931631,89932627,89950142,89952605	0.900000
SK_MEL_5	chr7	91455592	91455612	91455592	+	High_confidence	24	27	43	1.710169	4.693479	chr7	91447504	91455959	LTR|ERV1|HERV9-int	-	chr7	91455613	91496560	STRG.51516.1	+	91455613,91466844,91493394,91494637,91496502	91456033,91466878,91493535,91494754,91496560	0.511628
SK_MEL_5	chr3	185689708	185689727	185689709	-	High_confidence	3	5	10	0.397714	2.521928	chr3	185689686	185689988	SINE|Alu|AluYa5	+	chr3	185649402	185689238	IGF2BP2|ENST00000494906.1	-	185649402,185652093,185657285,185658340,185675295,185675790,185687056,185689107	185649534,185652168,185657402,185658409,185675431,185675913,185687191,185689238	0.800000
SK_MEL_5	chr9	120543265	120543273	120543267	-	RAMPAGE_only	10	12	19	0.755656	3.947703	chr9	120543133	120543401	LINE|L2|L2a	+	chr9	120439517	120539120	STRG.64001.6	-	120439517,120443619,120447894,120453455,120458449,120460571,120467859,120470110,120471747,120475031,120475205,120475663,120487293,120491306,120518426,120524985,120527805,120528743,120529977,120536371,120539040	120439972,120443742,120448126,120453873,120458622,120460667,120467997,120470220,120471878,120475106,120475281,120477450,120487437,120491477,120518645,120525078,120527925,120528797,120530140,120536526,120539120	0.947368
SK_MEL_5	chr15	55270861	55270933	55270921	-	High_confidence	383	481	1419	56.435570	6.246800	chr15	55270754	55271222	LINE|L2|L2	+	chr15	55202965	55270909	RAB27A|NM_183236.2	-	55202965,55223888,55228608,55230400,55234781,55270164,55270858	55205705,55224012,55228712,55230486,55234956,55270284,55270909	0.956307
SK_MEL_5	chr11	22317617	22317650	22317649	-	High_confidence	5	5	10	0.397714	2.646439	chr11	22317577	22318319	LTR|ERV1|LTR17	-	chr11	22261257	22317995	STRG.70727.1	-	22261257,22262168,22281541,22283729,22301279,22305656,22307236,22317546	22261636,22262254,22281643,22283824,22301399,22305807,22307374,22317995	0.900000
SK_MEL_5	chr21	22190700	22190719	22190705	-	High_confidence	11	16	40	1.590855	4.512815	chr21	22190554	22190821	SINE|Alu|AluY	+	chr21	22092577	22190732	STRG.111766.1	-	22092577,22096528,22120720,22190494	22092638,22096586,22120892,22190732	0.600000
SK_MEL_5	chr9	83026489	83026490	83026489	-	RAMPAGE_only	9	10	14	0.556799	3.085055	chr9	83026313	83026686	LTR|ERVL-MaLR|THE1D	-	chr9	82979584	83063128	RASEF|NM_152573.3	-	82979584,82990390,82992905,82997011,82998364,83000168,83000432,83000895,83004497,83005415,83007436,83009640,83012433,83015804,83022335,83025774,83062436	82982782,82990467,82993025,82997126,82998446,83000316,83000570,83001130,83004586,83005500,83007505,83009756,83012511,83015900,83022426,83025921,83063128	0.928571
SK_MEL_5	chr11	73827932	73827933	73827932	+	RAMPAGE_only	17	17	17	0.676113	3.616875	chr11	73827872	73827981	SINE|MIR|MIRc	+	chr11	73842112	73864599	MRPL48|ENST00000314282.7	+	73842112,73844806,73859906,73863171,73864295	73843367,73844976,73860009,73863261,73864599	1.000000
SK_MEL_5	chr14	50321253	50321263	50321262	+	High_confidence	3	3	8	0.318171	2.521641	chr14	50321258	50321358	SINE|MIR|MIR3	-	chr14	50321318	50325677	ATP5S|ENST00000554951.5	+	50321318,50321482,50322510,50323944,50325608	50321376,50321594,50322719,50324116,50325677	0.500000
SK_MEL_5	chr6	132511299	132511336	132511306	-	RAMPAGE_only	11	17	60	2.386282	4.360771	chr6	132511239	132511617	LINE|L2|L2a	+	chr6	132445866	132513062	STX7|ENST00000367941.6	-	132445866,132463992,132468402,132469950,132470573,132471462,132472281,132475592,132503445,132513006	132460850,132464075,132468475,132470047,132470626,132471600,132472375,132475662,132503588,132513062	0.883333
SK_MEL_5	chr22	32137791	32137825	32137819	+	RAMPAGE_only	17	18	35	1.391998	4.493150	chr22	32137666	32138166	LTR|ERV1|HERVE_a-int	+	chr22	32190786	32191763	STRG.114237.1	+	32190786	32191763	0.628571
SK_MEL_5	chr6	57961631	57961653	57961647	+	High_confidence	7	7	20	0.795427	3.746439	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961547	57972280	AL445250.1|ENST00000420759.2	+	57961547,57971594,57972093	57961742,57971656,57972280	0.550000
SK_MEL_5	chr12	89461072	89461074	89461072	-	High_confidence	10	20	20	0.795427	3.684184	chr12	89461035	89461240	DNA|hAT-Charlie|MER30	-	chr12	89420786	89461842	POC1B|ENST00000546740.5	-	89420786,89425160,89461621	89421257,89425379,89461842	0.800000
SK_MEL_5	chr14	101722205	101722235	101722234	-	High_confidence	6	6	12	0.477256	2.855389	chr14	101722082	101722338	LINE|L1|L1ME3Cz	+	chr14	101721879	101722218	STRG.88261.2	-	101721879	101722218	0.750000
SK_MEL_5	chr11	88845729	88845730	88845729	-	RAMPAGE_only	6	6	6	0.238628	2.584963	chr11	88845423	88845728	SINE|Alu|AluYh3	-	chr11	88113241	88175467	RAB38|ENST00000243662.10	-	88113241,88149674,88175182	88114140,88149955,88175467	1.000000
SK_MEL_5	chr3	135965673	135965762	135965748	+	High_confidence	7	7	75	2.982853	4.931482	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	1.000000
SK_MEL_5	chr6	52955040	52955041	52955040	+	RAMPAGE_only	10	10	10	0.397714	2.721928	chr6	52955078	52955376	SINE|Alu|AluSz6	+	chr6	52995619	52995950	RF00100|ENST00000365328.1	+	52995619	52995950	1.000000
SK_MEL_5	chr8	91197367	91197453	91197411	+	High_confidence	16	16	119	4.732793	5.003394	chr8	91191844	91197868	LINE|L1|L1PA3	-	chr8	91197418	91219257	STRG.57958.1	+	91197418,91200612,91218889	91197524,91200792,91219257	0.865546
SK_MEL_5	chr2	176235242	176235243	176235242	+	RAMPAGE_only	7	7	11	0.437485	3.277613	chr2	176235174	176235592	DNA|hAT-Tip100|MER45B	-	chr2	176242110	176242993	RPSAP25|ENST00000412645.1	+	176242110	176242993	0.545455
SK_MEL_5	chr11	90489263	90489317	90489263	+	High_confidence	295	303	1132	45.021188	7.122853	chr11	90489082	90489436	LTR|ERVL-MaLR|THE1B	+	chr11	90489309	90866173	STRG.73643.5	+	90489309,90546753,90801765,90844879,90852615,90856660	90489352,90546895,90801862,90844949,90852707,90866173	0.537102
SK_MEL_5	chr1	78677362	78677381	78677362	+	RAMPAGE_only	5	5	22	0.874970	4.277613	chr1	78677242	78677824	LTR|ERVL|MLT2B3	-	chr1	78727907	78728110	STRG.4019.1	+	78727907	78728110	0.590909
SK_MEL_5	chr19	45424377	45424396	45424395	-	High_confidence	4	4	13	0.517028	3.418296	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	0.923077
SK_MEL_5	chr16	72616036	72616068	72616043	-	RAMPAGE_only	3	3	12	0.477256	3.095795	chr16	72615908	72616246	LTR|ERVL-MaLR|THE1B	-	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.583333
SK_MEL_5	chr2	58284210	58284233	58284232	+	RAMPAGE_only	3	3	7	0.278400	2.521641	chr2	58283975	58284281	LTR|ERV1|MER39	-	chr2	58275876	58296548	LINC01795|ENST00000454367.1	+	58275876,58293688,58296397	58276182,58294044,58296548	0.571429
SK_MEL_5	chr17	43124870	43124906	43124905	-	High_confidence	2	2	6	0.238628	2.584963	chr17	43124781	43124980	SINE|Alu|AluSx	-	chr17	43094111	43125300	BRCA1|ENST00000492859.5	-	43094111,43095845,43097243,43099774,43104121,43104867,43106455,43110464,43115725,43124016,43125270	43094860,43095922,43097289,43099880,43104261,43104956,43106533,43110580,43115779,43124115,43125300	1.000000
SK_MEL_5	chr1	226182421	226182422	226182421	-	RAMPAGE_only	7	7	10	0.397714	2.521928	chr1	226182334	226182625	SINE|Alu|AluSz	+	chr1	226144678	226186722	ACBD3|NM_022735.3	-	226144678,226152334,226154646,226159183,226161530,226164788,226165858,226186389	226146821,226152619,226154833,226159358,226161689,226164929,226166000,226186722	1.000000
SK_MEL_5	chr3	9391827	9391828	9391827	-	High_confidence	16	16	17	0.676113	3.875000	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9389698	9391822	STRG.20473.22	-	9389698,9390289	9389796,9391822	0.823529
SK_MEL_5	chr20	18794077	18794086	18794077	+	High_confidence	30	30	57	2.266968	5.030395	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794087	18795878	STRG.109563.1	+	18794087,18794530	18794106,18795878	0.701754
SK_MEL_5	chr20	57601261	57601309	57601261	-	High_confidence	2	2	10	0.397714	2.921928	chr20	57600987	57601427	LINE|L2|L2b	+	chr20	57599694	57601200	AL035541.1|ENST00000424850.1	-	57599694,57600911	57600228,57601200	0.800000
SK_MEL_5	chr3	171666342	171666343	171666342	-	High_confidence	51	52	68	2.704453	5.263943	chr3	171666174	171666536	LTR|ERVL-MaLR|THE1B	-	chr3	171612278	171666305	PLD1|ENST00000465816.6	-	171612278,171620385,171642839,171644909,171659212,171662059,171666257	171612432,171620520,171642889,171645023,171659301,171662170,171666305	0.838235
SK_MEL_5	chr13	27445107	27445130	27445107	-	RAMPAGE_only	3	4	10	0.397714	2.641604	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.900000
SK_MEL_5	chr4	84229649	84229652	84229651	-	RAMPAGE_only	5	9	11	0.437485	3.095795	chr4	84229482	84229845	LTR|ERVL-MaLR|THE1D	-	chr4	84218154	84218946	STRG.30863.1	-	84218154	84218946	0.727273
SK_MEL_5	chr1	6200570	6200658	6200636	-	High_confidence	7	7	68	2.704453	3.637878	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.985294
SK_MEL_5	chr9	3369291	3369307	3369306	-	RAMPAGE_only	3	5	10	0.397714	2.721928	chr9	3369143	3369489	LTR|ERVL-MaLR|MLT1A0	-	chr9	3247036	3395596	RFX3|ENST00000358730.6	-	3247036,3256990,3262934,3266207,3270370,3271002,3275499,3277339,3288130,3293076,3301545,3330258,3346666,3395471	3248185,3257199,3263084,3266305,3270525,3271118,3275612,3277461,3288250,3293258,3301620,3330517,3346764,3395596	0.600000
SK_MEL_5	chr11	61949808	61949821	61949811	+	High_confidence	8	8	24	0.954513	3.435755	chr11	61949804	61949945	SINE|MIR|MIR3	-	chr11	61949820	61964461	BEST1|ENST00000378043.8	+	61949820,61951770,61955106,61955717,61956843,61957386,61958145,61959497,61959891,61962254,61964103	61950427,61951958,61955201,61955951,61956998,61957464,61958298,61959578,61960043,61962893,61964461	0.958333
SK_MEL_5	chrX	16712889	16712933	16712932	-	High_confidence	7	7	26	1.034056	3.886842	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.923077
SK_MEL_5	chr6	167533020	167533057	167533020	-	High_confidence	21	22	99	3.937365	5.556051	chr6	167532881	167533054	LINE|L1|L1MEd	+	chr6	167526697	167533049	STRG.47383.1	-	167526697,167531426,167532662,167532982	167528340,167531542,167532827,167533049	0.515152
SK_MEL_5	chr12	108724460	108724477	108724468	-	RAMPAGE_only	20	22	69	2.744224	5.524826	chr12	108724418	108724519	SINE|MIR|MIRc	+	chr12	108645108	108730843	CORO1C|NM_001276471.1	-	108645108,108648604,108648962,108652271,108654305,108657303,108658737,108662028,108678271,108701123,108730622	108647522,108648850,108649020,108652417,108654410,108657423,108658919,108662158,108678394,108701323,108730843	0.739130
SK_MEL_5	chr7	95407930	95407939	95407930	-	RAMPAGE_only	3	6	12	0.477256	3.095795	chr7	95407677	95408031	LINE|L2|L2c	-	chr7	95404866	95434991	PON2|ENST00000455123.5	-	95404866,95406118,95406986,95409953,95411652,95412311,95416241,95424514,95434877	95405488,95406247,95407068,95410101,95411779,95412477,95416297,95424585,95434991	0.916667
SK_MEL_5	chr16	885587	885591	885590	-	RAMPAGE_only	6	6	12	0.477256	2.663533	chr16	884862	886073	LINE|L1|L1MEc	+	chr16	854499	873860	LMF1|ENST00000569516.5	-	854499,868943,869882,870728,871160	854706,869056,870066,870882,873860	0.666667
SK_MEL_5	chr14	77076158	77076194	77076193	-	High_confidence	31	33	105	4.175994	5.469248	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77073906	77076362	STRG.87424.2	-	77073906,77076104	77074598,77076362	0.904762
SK_MEL_5	chr2	113374993	113374994	113374993	-	High_confidence	45	45	46	1.829483	3.622098	chr2	113374826	113375188	LTR|ERVL-MaLR|THE1A	-	chr2	113370290	113374974	STRG.15577.1	-	113370290,113374910	113370764,113374974	0.978261
SK_MEL_5	chr19	48118285	48118322	48118285	-	High_confidence	7	7	26	1.034056	3.719295	chr19	48118234	48118534	LTR|ERVL-MaLR|THE1B	+	chr19	48115523	48118293	STRG.107657.13	-	48115523,48115872,48117637,48118249	48115732,48115965,48117781,48118293	0.769231
SK_MEL_5	chr8	74621553	74621555	74621553	-	High_confidence	4	8	11	0.437485	2.921928	chr8	74621376	74621737	LTR|ERVL-MaLR|THE1D	-	chr8	74620582	74621465	STRG.57220.1	-	74620582	74621465	0.818182
SK_MEL_5	chr16	726885	726916	726897	-	High_confidence	3	3	12	0.477256	2.855389	chr16	726845	726893	LINE|L2|L2b	-	chr16	722587	726880	CCDC78|ENST00000466708.5	-	722587,722921,723094,723856,724105,724321,724910,725077,725236,725445,725793,725965,726614	722789,723022,723161,723936,724205,724806,724989,725145,725293,725580,725880,726085,726880	1.000000
SK_MEL_5	chr19	55280196	55280288	55280218	-	High_confidence	5	5	23	0.914741	2.907855	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
SK_MEL_5	chr18	73264469	73264502	73264501	-	High_confidence	33	34	198	7.874731	6.444040	chr18	73264307	73264608	SINE|Alu|AluY	+	chr18	73154057	73264498	LOC400655|NR_034133.1	-	73154057,73159540,73161823,73200652,73255812,73264239	73155935,73159664,73161973,73200789,73255918,73264498	0.691919
SK_MEL_5	chr15	74490279	74490290	74490289	-	High_confidence	7	7	14	0.556799	3.467720	chr15	74490025	74490757	LINE|L2|L2a	+	chr15	74478069	74490286	AC012435.1|ENST00000563287.1	-	74478069,74490235	74481403,74490286	1.000000
SK_MEL_5	chr16	35516862	35517167	35516862	+	High_confidence	67	75	584	23.226478	7.035447	chr16	35516603	35517040	LTR|ERVK|LTR3B_	+	chr16	35516884	35525335	STRG.94544.1	+	35516884,35522118	35517144,35525335	0.623288
SK_MEL_5	chr18	3857616	3857646	3857616	-	High_confidence	24	24	84	3.340795	5.542507	chr18	3857472	3857863	LINE|L2|L2c	+	chr18	3726847	3858100	STRG.102316.9	-	3726847,3729134,3742334,3814058,3857478	3727936,3729375,3742512,3814273,3858100	0.642857
SK_MEL_5	chr17	59651214	59651265	59651214	+	RAMPAGE_only	8	8	44	1.749940	3.695689	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.886364
SK_MEL_5	chr7	104759788	104759813	104759788	-	RAMPAGE_only	3	3	9	0.357942	2.641604	chr7	104759749	104759985	SINE|MIR|MIRb	-	chr7	104738596	104757748	LHFPL3-AS1|ENST00000433514.5	-	104738596,104744049,104752714,104757608	104738984,104744180,104752803,104757748	0.777778
SK_MEL_5	chr3	107202966	107203000	107202999	-	RAMPAGE_only	432	755	1093	43.470104	6.917475	chr3	107202830	107203195	LTR|ERVL-MaLR|THE1B	-	chr3	107111484	107240627	LINC00882|ENST00000479612.6	-	107111484,107129887,107240442	107112146,107129992,107240627	0.587374
SK_MEL_5	chr12	54187904	54187905	54187904	-	High_confidence	9	9	11	0.437485	3.027169	chr12	54187852	54187993	LINE|L2|L2c	-	chr12	54181484	54187906	SMUG1|ENST00000505662.1	-	54181484,54183764,54187818	54182623,54183959,54187906	0.545455
SK_MEL_5	chr5	111338690	111338706	111338690	+	RAMPAGE_only	3	3	7	0.278400	2.807355	chr5	111338402	111339049	LINE|L1|L1P4	-	chr5	111224541	111494886	CAMK4|NM_001323377.1	+	111224541,111344023,111374849,111394709,111446685,111449128,111473310,111478380,111482784,111484025	111224644,111344102,111374912,111394782,111446776,111449203,111473386,111478507,111482937,111494886	0.571429
SK_MEL_5	chr9	5893943	5893953	5893943	+	RAMPAGE_only	3	3	11	0.437485	2.921928	chr9	5893923	5894058	SINE|MIR|MIRb	-	chr9	5890921	5908945	MLANA|ENST00000381471.1	+	5890921,5892449,5897556,5906884,5908639	5891302,5892551,5897653,5906998,5908945	0.545455
SK_MEL_5	chr11	32132656	32132657	32132656	+	High_confidence	46	49	56	2.227197	4.061299	chr11	32132461	32132828	LTR|ERVL-MaLR|THE1B	+	chr11	32132698	32143579	AL078612.2|ENST00000525133.1	+	32132698,32137120,32143143	32132786,32137242,32143579	0.910714
SK_MEL_5	chr3	15341578	15341581	15341578	+	High_confidence	299	311	451	17.936887	5.729235	chr3	15341407	15341757	LTR|ERVL-MaLR|THE1D	+	chr3	15341592	15344953	STRG.20846.2	+	15341592,15343496	15341644,15344953	0.820399
SK_MEL_5	chr14	83638916	83638926	83638916	+	High_confidence	5	5	24	0.954513	3.849224	chr14	83638774	83639162	LTR|ERVL-MaLR|THE1D	+	chr14	83638995	83658615	STRG.87654.1	+	83638995,83639304,83646543,83658422	83639086,83639395,83646654,83658615	0.583333
SK_MEL_5	chr4	170979233	170979249	170979242	+	High_confidence	4	6	21	0.835199	3.366091	chr4	170977400	170979316	LINE|L1|L1PB1	-	chr4	170979300	170994416	STRG.32817.1	+	170979300,170993736	170979383,170994416	0.904762
SK_MEL_5	chr2	227805896	227805948	227805896	+	RAMPAGE_only	10	10	34	1.352226	3.525127	chr2	227805690	227806180	LTR|ERV1|LTR2C	-	chr2	227813841	227817564	CCL20|NM_001130046.1	+	227813841,227815456,227816306,227817061	227813987,227815568,227816384,227817564	0.794118
SK_MEL_5	chr5	86604357	86604362	86604361	-	High_confidence	8	11	15	0.596571	2.896292	chr5	86604178	86604552	LTR|ERVL-MaLR|THE1C	-	chr5	86548616	86604464	STRG.36854.1	-	86548616,86553344,86562573,86570416,86604296	86548694,86553438,86562722,86570721,86604464	0.733333
SK_MEL_5	chrX	88963223	88963256	88963227	+	High_confidence	11	21	58	2.306739	4.300147	chrX	88963047	88963389	LTR|ERVL-MaLR|THE1B	+	chrX	88963238	88990405	STRG.117788.1	+	88963238,88988895,88989814	88963306,88989066,88990405	0.758621
SK_MEL_5	chr14	55796687	55796688	55796687	-	High_confidence	1399	1553	1885	74.969027	6.608724	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796688	LINC00520|ENST00000649892.1	-	55781136,55793367,55796602	55782581,55793456,55796688	0.787798
SK_MEL_5	chr5	28078034	28078081	28078046	+	RAMPAGE_only	15	15	60	2.386282	4.510852	chr5	28076635	28078216	LTR|ERV1|LTR12C	-	chr5	28083484	28084734	STRG.34418.1	+	28083484	28084734	0.650000
SK_MEL_5	chr6	127330889	127330903	127330902	-	High_confidence	3	3	9	0.357942	2.503258	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.888889
SK_MEL_5	chr6	120005721	120005722	120005721	+	High_confidence	219	245	308	12.249581	6.605420	chr6	120005532	120005899	LTR|ERVL-MaLR|THE1D	+	chr6	120005698	120706778	STRG.45406.1	+	120005698,120128566,120462510,120706389	120005816,120128641,120462591,120706778	0.532468
SK_MEL_5	chr2	21618022	21618048	21618039	-	RAMPAGE_only	3	3	14	0.556799	3.238901	chr2	21610846	21618479	LINE|L1|L1MA1	-	chr2	21607464	21637197	AC009411.2|ENST00000648747.1	-	21607464,21636042,21636268	21607910,21636144,21637197	0.571429
SK_MEL_5	chr4	3544591	3544617	3544591	+	High_confidence	7	7	21	0.835199	3.584184	chr4	3544561	3544648	SINE|MIR|MIRb	-	chr4	3544554	3549190	STRG.28230.3	+	3544554,3545094,3548460	3544923,3546348,3549190	0.952381
SK_MEL_5	chr8	116804413	116804417	116804413	+	RAMPAGE_only	4	4	11	0.437485	2.663533	chr8	116804230	116804599	LTR|ERVL-MaLR|THE1D	+	chr8	116770189	116849079	UTP23|ENST00000520733.5	+	116770189,116848887	116770366,116849079	0.909091
SK_MEL_5	chr13	52661481	52661507	52661481	+	RAMPAGE_only	2	2	10	0.397714	2.725481	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	0.900000
SK_MEL_5	chr15	66502611	66502721	66502611	-	High_confidence	72	72	852	33.885205	6.670165	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.923709
SK_MEL_5	chr12	9645304	9645307	9645304	+	RAMPAGE_only	38	42	63	2.505596	5.040462	chr12	9645124	9645474	LTR|ERVL-MaLR|THE1B	+	chr12	9642867	9658415	LOC374443|NR_046449.2	+	9642867,9653682,9655872,9656920	9643103,9653808,9655979,9658415	0.793651
SK_MEL_5	chr17	58032851	58032871	58032870	+	RAMPAGE_only	7	7	18	0.715885	3.725481	chr17	58032879	58033257	DNA|hAT-Tip100|Zaphod	+	chr17	58083414	58095536	DYNLL2|ENST00000579991.2	+	58083414,58087081,58089141	58083683,58087222,58095536	0.722222
SK_MEL_5	chr1	168220609	168220613	168220611	-	RAMPAGE_only	9	17	22	0.874970	3.439936	chr1	168220433	168220794	LTR|ERVL-MaLR|THE1D	-	chr1	168207146	168209419	STRG.7249.1	-	168207146,168209385	168208717,168209419	0.681818
SK_MEL_5	chr22	50785231	50785278	50785277	+	RAMPAGE_only	3	3	13	0.517028	3.085055	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.692308
SK_MEL_5	chr5	147257634	147257650	147257649	+	RAMPAGE_only	21	22	41	1.630626	4.696103	chr5	147256811	147259543	LTR|ERV1|HERVIP10FH-int	-	chr5	147235124	147384678	STK32A|ENST00000398523.3	+	147235124,147239538,147278123,147279246,147323897,147343005,147351064,147361516,147370653,147373168,147375089,147383440,147383889,147384374	147235199,147239686,147278179,147279398,147324071,147343043,147351154,147361614,147370770,147373294,147375218,147383505,147383954,147384678	0.585366
SK_MEL_5	chr13	82457774	82457813	82457774	+	High_confidence	11	11	31	1.232912	3.905924	chr13	82457553	82458088	LTR|ERV1|LTR17	+	chr13	82457800	82525550	STRG.83576.1	+	82457800,82523822,82525367	82458119,82524005,82525550	0.709677
SK_MEL_5	chr14	101730404	101730406	101730404	+	High_confidence	18	32	39	1.551083	4.406821	chr14	101730210	101730580	LTR|ERVL-MaLR|THE1B	+	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	1.000000
SK_MEL_5	chr4	58803477	58803478	58803477	-	High_confidence	425	429	464	18.453914	6.731804	chr4	58803319	58803671	LTR|ERVL-MaLR|THE1A	-	chr4	58780314	58803460	STRG.30206.2	-	58780314,58782544,58784035,58793472,58803357	58781126,58782642,58784261,58793592,58803460	0.991379
SK_MEL_5	chr12	53251243	53251270	53251269	+	High_confidence	20	22	82	3.261252	5.530875	chr12	53251157	53251415	LINE|L2|L2a	-	chr12	53251250	53253752	STRG.77663.1	+	53251250,53251704,53252817	53251624,53252035,53253752	0.951220
SK_MEL_5	chr8	144079258	144079263	144079262	+	High_confidence	10	11	16	0.636342	2.789898	chr8	144079154	144079438	LINE|L2|L2a	+	chr8	144079422	144080579	EXOSC4|ENST00000527954.1	+	144079422,144080241	144080149,144080579	0.750000
SK_MEL_5	chr2	40321698	40321746	40321711	-	RAMPAGE_only	9	10	50	1.988568	4.790944	chr2	40321470	40321842	LTR|ERVL-MaLR|THE1C	-	chr2	40114730	40430271	SLC8A1|ENST00000407929.6	-	40114730,40139400,40160764,40164853,40174824,40177751,40178386,40428472	40115629,40139676,40160864,40164984,40174842,40177855,40178493,40430271	0.800000
SK_MEL_5	chr12	15764158	15764162	15764158	-	RAMPAGE_only	40	50	72	2.863538	5.150293	chr12	15763995	15764357	LTR|ERVL-MaLR|THE1B	-	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.500000
SK_MEL_5	chr20	49239243	49239320	49239319	+	RAMPAGE_only	4	4	36	1.431769	3.988555	chr20	49239347	49239425	LINE|L1|L1MB4	+	chr20	49233837	49244077	DDX27|ENST00000471144.1	+	49233837,49238948,49239235,49241892,49242082,49242593,49243628	49236510,49239055,49239338,49241987,49242206,49242681,49244077	0.944444
SK_MEL_5	chrX	138990575	138990601	138990597	-	High_confidence	281	341	575	22.868536	5.266066	chrX	138990423	138990790	LTR|ERVL-MaLR|THE1B	-	chrX	138635485	138990567	FGF13|ENST00000455663.5	-	138635485,138702983,138708817,138857511,138985017,138990507	138635655,138703087,138708928,138857679,138985091,138990567	0.961739
SK_MEL_5	chr4	142487146	142487149	142487146	+	RAMPAGE_only	20	22	30	1.193141	3.789898	chr4	142486954	142487324	LTR|ERVL-MaLR|THE1B	+	chr4	142490148	142490423	STRG.32232.1	+	142490148	142490423	0.633333
SK_MEL_5	chr7	130916026	130916033	130916032	+	RAMPAGE_only	5	5	9	0.357942	2.500000	chr7	130915903	130916038	SINE|MIR|MIRc	+	chr7	130913463	130921946	LOC100506860|NR_109780.1	+	130913463,130914961,130915899,130921535	130913625,130915102,130916132,130921946	0.555556
SK_MEL_5	chr7	46758476	46758521	46758489	-	RAMPAGE_only	11	11	43	1.710169	4.600456	chr7	46758349	46758453	SINE|MIR|MIR1_Amn	-	chr7	46688939	46759844	AC011294.1|ENST00000469937.2	-	46688939,46692810,46759741	46689546,46692969,46759844	0.744186
SK_MEL_5	chr6	10521566	10521579	10521567	-	High_confidence	4	6	15	0.596571	2.789898	chr6	10521558	10521623	LINE|L2|L2a	+	chr6	10508636	10521211	STRG.41251.1	-	10508636,10510342,10521066	10509303,10510640,10521211	0.733333
SK_MEL_5	chr1	185834459	185834505	185834459	-	High_confidence	44	50	147	5.846391	5.863898	chr1	185834183	185834763	LTR|ERVL-MaLR|MLT1F2	-	chr1	185827956	185834610	STRG.7908.1	-	185827956,185834403	185830719,185834610	0.857143
SK_MEL_5	chrX	84876375	84876376	84876375	-	RAMPAGE_only	7	7	11	0.437485	3.121928	chrX	84876178	84876473	SINE|Alu|AluY	+	chrX	84857490	84857822	STRG.117737.1	-	84857490	84857822	0.545455
SK_MEL_5	chr11	5505651	5505652	5505651	-	High_confidence	980	997	1094	43.509876	7.074230	chr11	5505485	5505844	LTR|ERVL-MaLR|THE1B	-	chr11	5268344	5505652	HBE1|ENST00000292896.3	-	5268344,5269453,5269798,5505568	5268597,5269676,5270156,5505652	0.524680
SK_MEL_5	chr8	143281653	143281687	143281686	-	High_confidence	26	35	181	7.198617	5.495585	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.541436
SK_MEL_5	chr7	40547017	40547021	40547018	-	High_confidence	8	12	22	0.874970	4.004886	chr7	40546944	40547406	LTR|ERVL|MLT2B4	-	chr7	40538126	40546928	AC004988.1|ENST00000415237.1	-	40538126,40546713	40539682,40546928	0.500000
SK_MEL_5	chr5	181248085	181248102	181248101	-	High_confidence	15	18	48	1.909026	4.637154	chr5	181248093	181248300	LINE|L2|L2b	+	chr5	181238169	181248096	RACK1|ENST00000507000.5	-	181238169,181239066,181239486,181241491,181242173,181248008	181238239,181239177,181239582,181241639,181242345,181248096	0.791667
SK_MEL_5	chr4	16016652	16016701	16016678	-	High_confidence	4	4	16	0.636342	3.506891	chr4	16016670	16017345	LINE|L1|L1MC4	+	chr4	15968255	16016674	STRG.28771.1	-	15968255,15971042,15979394,15979880,15980421,15984262,15985759,15985956,15987662,15989731,15991221,15992247,15993986,15998384,16000495,16006537,16008948,16013274,16016165,16016635	15969368,15971082,15979463,15979904,15980537,15984355,15985828,15986037,15987716,15989824,15991293,15992391,15994071,15998488,16000619,16006690,16009108,16013338,16016240,16016674	0.750000
SK_MEL_5	chr1	210439390	210439451	210439448	+	High_confidence	56	58	234	9.306500	6.714247	chr1	210438946	210439615	LTR|ERVL|ERVL-B4-int	-	chr1	210439318	210676296	STRG.8761.7	+	210439318,210464504,210513152,210587897,210623525,210674287	210439478,210464655,210513188,210588099,210623670,210676296	0.777778
SK_MEL_5	chr4	184814206	184814207	184814206	-	RAMPAGE_only	16	16	22	0.874970	3.308751	chr4	184814008	184814313	SINE|Alu|AluY	+	chr4	184755594	184812259	ACSL1|NM_001286708.1	-	184755594,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621,184768315,184770398,184773080,184773662,184773842,184776483,184776883,184780331,184783926,184788616,184803319,184812159	184757265,184757706,184757920,184760500,184762523,184763255,184764925,184765986,184766756,184768450,184770476,184773154,184773714,184773875,184776662,184776983,184780433,184783991,184788731,184803546,184812259	0.500000
SK_MEL_5	chr14	81166251	81166254	81166251	-	High_confidence	9	10	20	0.795427	3.681881	chr14	81166191	81166439	LTR|ERVL-MaLR|MLT1J2	+	chr14	81165176	81166137	STRG.87553.2	-	81165176,81166112	81165381,81166137	0.550000
SK_MEL_5	chr12	129109673	129109674	129109673	+	High_confidence	1407	1470	1614	64.190987	5.554338	chr12	129109479	129109833	LTR|ERVL-MaLR|THE1A	+	chr12	129109689	129113298	LOC283352|NR_104172.1	+	129109689,129110992,129111419,129113064	129109757,129111139,129111515,129113298	0.899009
SK_MEL_5	chr5	147839192	147839196	147839194	-	High_confidence	40	71	92	3.658966	4.282071	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824581	147839177	STRG.39521.1	-	147824581,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839177	0.967391
SK_MEL_5	chr16	17403530	17403532	17403530	-	RAMPAGE_only	72	92	109	4.335079	5.520248	chr16	17403361	17403728	LTR|ERVL-MaLR|THE1B	-	chr16	17102332	17369619	STRG.93711.3	-	17102332,17117645,17127665,17134472,17138354,17141152,17158828,17198211,17200481,17258987,17358011,17369593	17109017,17117979,17127861,17134735,17138531,17141369,17158909,17198414,17200654,17259498,17358050,17369619	0.504587
SK_MEL_5	chr7	103225840	103225883	103225882	-	RAMPAGE_only	3	3	14	0.556799	3.182006	chr7	103225820	103226186	LTR|ERVL-MaLR|MLT1A0	+	chr7	103175272	103234729	STRG.52414.4	-	103175272,103184001,103185437,103210266,103212160,103214000,103216462,103225104,103233799,103234648	103175411,103184127,103185537,103210313,103212232,103214102,103216543,103225164,103233886,103234729	0.571429
SK_MEL_5	chr1	70948345	70948346	70948345	+	High_confidence	10	10	11	0.437485	2.646439	chr1	70948171	70948531	LTR|ERVL-MaLR|THE1C	+	chr1	70947378	70951493	STRG.3877.4	+	70947378,70950734	70947475,70951493	0.818182
SK_MEL_5	chr9	115744258	115744269	115744258	-	High_confidence	12	13	21	0.835199	2.855905	chr9	115743858	115744555	LTR|ERV1|MER50B	-	chr9	115739339	115744256	AL691420.1|ENST00000644298.1	-	115739339,115741461,115742952,115744156	115739874,115741562,115743070,115744256	0.952381
SK_MEL_5	chr2	3536480	3536497	3536496	-	High_confidence	4	4	10	0.397714	2.646439	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531884	3536466	STRG.10581.3	-	3531884,3534112,3536447	3532310,3534255,3536466	0.800000
SK_MEL_5	chr7	2242922	2242923	2242922	+	High_confidence	53	53	53	2.107882	5.336319	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.981132
SK_MEL_5	chr2	29114126	29114174	29114126	+	High_confidence	3	3	25	0.994284	3.893661	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.960000
SK_MEL_5	chr3	107248395	107248417	107248395	+	RAMPAGE_only	6	6	16	0.636342	2.872906	chr3	107248330	107248487	LTR|ERVL|LTR16B2	-	chr3	107241021	107256291	STRG.24229.1	+	107241021,107246007,107251542	107241087,107248831,107256291	0.812500
SK_MEL_5	chrX	55164149	55164174	55164173	-	RAMPAGE_only	4	4	17	0.676113	3.625000	chrX	55164086	55164236	LTR|ERVL-MaLR|MSTA	-	chrX	55145244	55161195	FAM104B|ENST00000425133.2	-	55145244,55159125,55161136	55146311,55159228,55161195	0.941176
SK_MEL_5	chr7	56043149	56043150	56043149	-	RAMPAGE_only	51	52	53	2.107882	4.750473	chr7	56042985	56043279	SINE|Alu|AluSx	+	chr7	56011050	56051448	PSPH|ENST00000437355.6	-	56011050,56011543,56015022,56017233,56019599,56021072,56051137	56011233,56011869,56015171,56017379,56019734,56021231,56051448	0.660377
SK_MEL_5	chr5	33441362	33441415	33441414	+	High_confidence	4	4	17	0.676113	3.734522	chr5	33441307	33441471	SINE|MIR|MIR3	-	chr5	33441380	33448730	TARS|ENST00000506040.1	+	33441380,33445323,33448540	33441864,33445404,33448730	0.705882
SK_MEL_5	chr14	105025089	105025090	105025089	-	RAMPAGE_only	8	8	9	0.357942	2.750000	chr14	105024875	105025057	LTR|ERVL-MaLR|MLT1H	-	chr14	105009572	105021148	CDCA4|ENST00000336219.3	-	105009572,105020998	105011935,105021148	0.666667
SK_MEL_5	chr1	39026172	39026199	39026192	+	High_confidence	4	5	12	0.477256	2.663533	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.916667
SK_MEL_5	chr20	20088464	20088469	20088468	-	High_confidence	62	67	109	4.335079	4.749689	chr20	20088284	20088660	LTR|ERVL-MaLR|THE1C	-	chr20	20080628	20088455	STRG.109595.1	-	20080628,20088402	20080997,20088455	0.834862
SK_MEL_5	chr15	87576924	87576929	87576928	+	High_confidence	11	11	21	0.835199	3.721612	chr15	87576719	87577130	LTR|ERVL-MaLR|MSTC	+	chr15	87576928	87579866	LINC00052|ENST00000560153.2	+	87576928,87577709,87578074	87577047,87577764,87579866	0.809524
SK_MEL_5	chr8	80485592	80485619	80485592	+	High_confidence	13	13	29	1.153370	4.307355	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.965517
SK_MEL_5	chr2	75871925	75871936	75871935	+	High_confidence	5	5	11	0.437485	2.732159	chr2	75871689	75872461	LTR|ERV1|LTR17	+	chr2	75871883	75880191	STRG.13948.1	+	75871883,75879069	75872492,75880191	0.909091
SK_MEL_5	chr18	14827416	14827527	14827481	+	High_confidence	52	53	264	10.499641	5.962391	chr18	14827405	14827653	LTR|ERVL|MER21B	+	chr18	14827425	14852738	STRG.102677.2	+	14827425,14828277,14831382,14837210,14837614,14840587,14842896,14843023,14848715,14850213,14851508	14827606,14828308,14831455,14837289,14837676,14840678,14842925,14843096,14848929,14850382,14852738	0.905303
SK_MEL_5	chr8	83403738	83403739	83403738	+	High_confidence	6626	6661	6963	276.928029	6.775910	chr8	83402757	83404051	LTR|ERV1|LTR12C	+	chr8	83403757	83408900	LINC01419|NR_122034.1	+	83403757,83407691	83404069,83408900	0.893724
SK_MEL_5	chr13	91877983	91877984	91877983	+	RAMPAGE_only	8	9	12	0.477256	3.022055	chr13	91877788	91878144	LTR|ERVL-MaLR|THE1A	+	chr13	91907955	92145459	STRG.83790.1	+	91907955,92144829	91908057,92145459	0.750000
SK_MEL_5	chr1	216175910	216175931	216175910	-	RAMPAGE_only	5	5	14	0.556799	2.842371	chr1	216175773	216176037	LTR|ERVL|LTR16A1	+	chr1	215622893	216423396	USH2A|NM_206933.2	-	215622893,215628813,215634458,215639154,215640557,215647521,215648527,215650591,215670971,215674099,215680148,215728029,215741374,215743176,215758594,215759659,215766680,215779842,215782041,215782737,215786669,215790058,215798906,215813735,215816996,215837990,215844293,215845823,215867006,215877757,215878763,215888425,215900074,215900754,215934615,215965316,215970624,215993019,215998886,216000402,216046430,216048533,216070100,216072888,216073096,216078088,216083455,216084697,216086718,216089012,216097082,216175251,216190222,216196552,216198314,216199626,216207272,216217386,216231952,216246584,216250902,216289279,216292174,216321882,216323473,216324167,216325304,216327590,216364952,216418513,216421851,216423213	215625870,215629035,215634703,215639238,215640734,215647730,215648766,215650801,215671293,215675616,215680376,215728384,215741537,215743335,215758752,215759843,215766788,215780041,215782196,215782935,215786874,215790282,215799125,215813904,215817195,215838103,215844496,215846033,215867170,215877880,215879098,215889054,215900217,215900905,215934795,215965479,215970776,215993167,215999058,216000562,216046592,216048647,216070292,216072969,216073300,216078362,216083586,216084877,216086820,216089139,216097213,216175482,216190367,216196722,216198584,216200121,216207431,216217550,216232136,216247226,216251098,216289410,216292370,216321976,216323695,216324352,216325599,216327654,216365085,216418679,216422540,216423396	1.000000
SK_MEL_5	chr16	81181316	81181348	81181330	-	High_confidence	6	6	26	1.034056	3.639080	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.846154
SK_MEL_5	chr9	102652628	102652648	102652628	-	High_confidence	543	546	1885	74.969027	8.029460	chr9	102652585	102653273	LTR|ERV1|MER50	+	chr9	102549563	102652665	STRG.63365.6	-	102549563,102579341,102652565	102553950,102579492,102652665	0.755438
SK_MEL_5	chr4	95062026	95062051	95062045	+	High_confidence	6	6	19	0.755656	3.683542	chr4	95061793	95062180	LTR|ERVL-MaLR|MSTA	+	chr4	95061988	95158448	STRG.31197.2	+	95061988,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547,95156786	95062095,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95154713,95158448	0.947368
SK_MEL_5	chr11	46927311	46927312	46927311	+	High_confidence	36	36	36	1.431769	4.215355	chr11	46927128	46927471	LTR|ERVL-MaLR|THE1A	+	chr11	46927333	47157923	STRG.71403.6	+	46927333,46987207,47052387,47137644,47155175,47157022,47157812	46927395,46987310,47052518,47137729,47155261,47157218,47157923	0.694444
SK_MEL_5	chr2	55654899	55654900	55654899	-	RAMPAGE_only	4	4	7	0.278400	2.521641	chr2	55654742	55654866	SINE|Alu|AluJr	-	chr2	55636369	55647382	PNPT1|ENST00000481066.1	-	55636369,55637551,55640626,55643157,55643318,55644636,55646258,55646414,55647346	55636392,55637599,55640705,55643213,55643425,55645432,55646322,55646486,55647382	1.000000
SK_MEL_5	chr17	59209387	59209413	59209392	+	High_confidence	6	6	22	0.874970	3.516028	chr17	59209373	59209528	SINE|Alu|AluSx3	-	chr17	59209399	59215239	SMG8|ENST00000543872.6	+	59209399,59209899,59212340,59212728,59214804	59209511,59211810,59212486,59213601,59215239	0.636364
SK_MEL_5	chr20	30611624	30611660	30611659	-	High_confidence	35	57	353	14.039293	5.177585	chr20	30611589	30611771	LTR|ERVL|LTR33	+	chr20	30610095	30611742	STRG.109896.1	-	30610095,30610821,30611464	30610395,30611052,30611742	0.997167
SK_MEL_5	chr2	55268579	55268625	55268579	-	High_confidence	2	2	14	0.556799	3.182006	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	0.857143
SK_MEL_5	chr9	100429513	100429550	100429549	+	High_confidence	72	73	278	11.056440	6.024424	chr9	100429405	100429575	LINE|L2|L2b	-	chr9	100429513	100451734	MSANTD3|NM_001198806.1	+	100429513,100441905,100450556	100429662,100442356,100451734	0.971223
SK_MEL_5	chr12	9399216	9399217	9399216	-	RAMPAGE_only	6	6	8	0.318171	2.521641	chr12	9398769	9399468	LINE|L1|L1MA9	+	chr12	9397056	9407542	STRG.75566.1	-	9397056,9397614,9398381,9399794,9400235,9401746,9402426,9406307,9407307	9397214,9397689,9398484,9399863,9400326,9401859,9402556,9406398,9407542	0.500000
SK_MEL_5	chr2	138403513	138403514	138403513	-	High_confidence	73	73	74	2.943081	4.358801	chr2	138403102	138403570	LINE|L1|L1MC1	+	chr2	138402714	138403202	STRG.16230.1	-	138402714	138403202	0.932432
SK_MEL_5	chr6	136225622	136225623	136225622	-	RAMPAGE_only	12	13	18	0.715885	3.725481	chr6	136225478	136225763	LTR|ERVL-MaLR|THE1B	-	chr6	136095959	136191875	AL138828.1|ENST00000585946.5	-	136095959,136162017,136162251,136191604	136096288,136162144,136162348,136191875	0.500000
SK_MEL_5	chrX	49590228	49590252	49590228	+	High_confidence	4	5	15	0.596571	3.240224	chrX	49590248	49590415	SINE|Alu|FRAM	+	chrX	49590479	49596827	STRG.117017.11	+	49590479,49594117,49596710	49591317,49594243,49596827	0.933333
SK_MEL_5	chr13	99496779	99496804	99496802	-	High_confidence	5	9	13	0.517028	3.084963	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.769231
SK_MEL_5	chr3	112302624	112302650	112302624	+	High_confidence	5	5	20	0.795427	3.471354	chr3	112302478	112303209	LTR|ERV1|HERV3-int	+	chr3	112302442	112307699	STRG.24419.1	+	112302442,112306913	112302714,112307699	0.900000
SK_MEL_5	chr12	26919049	26919072	26919071	-	RAMPAGE_only	8	12	27	1.073827	4.003856	chr12	26918889	26919198	SINE|Alu|AluJr	+	chr12	26905178	26938321	ASUN|NM_018164.2	-	26905178,26906301,26911177,26913456,26913973,26914407,26916001,26917351,26917643,26922615,26924354,26925760,26928204,26928702,26934555,26936578,26937795	26905536,26906437,26911317,26913687,26914128,26914578,26916180,26917441,26917733,26922700,26924483,26925851,26928285,26928905,26934630,26936814,26938321	0.555556
SK_MEL_5	chrX	15492635	15492640	15492639	-	High_confidence	11	11	24	0.954513	3.344457	chrX	15492554	15492724	SINE|MIR|MIR	+	chrX	15478415	15493288	PIR|ENST00000471725.1	-	15478415,15479728,15491161,15493189	15478589,15479821,15491309,15493288	0.916667
SK_MEL_5	chr6	73729130	73729156	73729130	+	RAMPAGE_only	2	2	8	0.318171	2.521641	chr6	73728830	73729330	LTR|ERVL-MaLR|MLT1F1	-	chr6	73722940	73810172	CD109|ENST00000649530.1	+	73722940,73723250,73730343,73736382,73756642,73758943,73762383,73762740,73763575,73765929,73766758,73766947,73768054,73771428,73780423,73781258,73782613,73783706,73785363,73787233,73788467,73792625,73803219,73806843,73808082,73809983	73723159,73723279,73730574,73736508,73756682,73759028,73762480,73762882,73763685,73766154,73766860,73767010,73768231,73771581,73780498,73781319,73782755,73783824,73785477,73787452,73788612,73792802,73803301,73807072,73808248,73810172	0.875000
SK_MEL_5	chr16	30623777	30623802	30623777	-	High_confidence	3	3	8	0.318171	2.521641	chr16	30618766	30623834	LTR|ERVK|HERVK3-int	-	chr16	30604617	30623948	ZNF689|ENST00000565440.5	-	30604617,30609524,30623739	30605447,30609638,30623948	0.500000
SK_MEL_5	chr14	50314590	50314591	50314590	+	RAMPAGE_only	7	7	7	0.278400	2.521641	chr14	50314465	50314637	LINE|L1|L1MD2	-	chr14	50312640	50334907	ATP5S|ENST00000311459.11	+	50312640,50321482,50322510,50323944,50325608	50313060,50321594,50322719,50324116,50334907	1.000000
SK_MEL_5	chr1	30815561	30815562	30815561	-	High_confidence	8	8	8	0.318171	2.500000	chr1	30815478	30815706	SINE|MIR|MIRb	+	chr1	30810377	30815553	AL137027.1|ENST00000440358.1	-	30810377,30815446	30810714,30815553	0.750000
SK_MEL_5	chr14	53217610	53217622	53217621	+	High_confidence	7	7	12	0.477256	2.918296	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217711	53687258	AL365295.1|ENST00000456100.5	+	53217711,53318030,53369451,53687198	53218055,53318138,53369501,53687258	0.750000
SK_MEL_5	chr6	68576098	68576099	68576098	-	High_confidence	7	9	11	0.437485	3.459432	chr6	68575863	68576052	LTR|ERVL|LTR16A1	-	chr6	68536378	68576178	STRG.43554.4	-	68536378,68576044	68537627,68576178	0.727273
SK_MEL_5	chr5	116830171	116830187	116830186	-	High_confidence	5	5	10	0.397714	2.947703	chr5	116830073	116830291	LTR|ERVL|LTR33B	-	chr5	116820992	116830187	AC010267.1|ENST00000508636.1	-	116820992,116825528,116830124	116821137,116825873,116830187	0.500000
SK_MEL_5	chr17	67239799	67239821	67239799	-	High_confidence	4	4	10	0.397714	2.921928	chr17	67239792	67240017	SINE|MIR|MIRb	+	chr17	67218607	67239800	HELZ|ENST00000579861.1	-	67218607,67239432	67218822,67239800	0.500000
SK_MEL_5	chr12	14101550	14101571	14101559	-	RAMPAGE_only	4	6	14	0.556799	2.777363	chr12	14101146	14105687	LINE|L1|L1PB1	+	chr12	14049152	14111504	STRG.75812.1	-	14049152,14052063,14111439	14049420,14052166,14111504	0.642857
SK_MEL_5	chr8	123796185	123796210	123796209	+	RAMPAGE_only	10	10	30	1.193141	4.039149	chr8	123795673	123796461	DNA|TcMar-Tigger|Tigger2	+	chr8	123768645	123814773	FAM91A1|ENST00000519721.5	+	123768645,123774079,123775146,123777264,123778024,123778658,123779984,123780479,123784469,123785080,123785628,123786494,123787260,123787663,123789612,123798089,123799519,123799771,123805266,123806079,123808271,123808892,123810281,123812518	123768774,123774164,123775298,123777322,123778092,123778772,123780082,123780542,123784576,123785119,123785741,123786610,123787373,123787750,123789745,123798238,123799654,123799885,123805339,123806229,123808376,123809016,123810351,123814773	0.600000
SK_MEL_5	chr8	144079355	144079380	144079379	+	High_confidence	9	11	25	0.994284	3.855389	chr8	144079154	144079438	LINE|L2|L2a	+	chr8	144078625	144080647	EXOSC4|ENST00000316052.5	+	144078625,144079942,144080241	144078899,144080149,144080647	0.960000
SK_MEL_5	chr6	8652268	8652297	8652268	+	High_confidence	15	15	38	1.511312	4.258200	chr6	8652094	8652454	LTR|ERVL-MaLR|MLT1A	+	chr6	8652261	8653814	AL591485.1|ENST00000646741.1	+	8652261,8653544	8653136,8653814	0.973684
SK_MEL_5	chr19	5680234	5680261	5680240	-	High_confidence	14	14	98	3.897594	5.104250	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.969388
SK_MEL_5	chr3	157381677	157381716	157381703	-	High_confidence	114	123	959	38.140741	6.896817	chr3	157381425	157381750	SINE|Alu|AluSz6	+	chr3	157363691	157381673	VEPH1|ENST00000488772.1	-	157363691,157364302,157381155,157381593	157363761,157364512,157381376,157381673	0.849844
SK_MEL_5	chr17	74584677	74584678	74584677	+	High_confidence	391	400	413	16.425575	7.059823	chr17	74584365	74584792	LTR|ERVK|LTR3B	+	chr17	74584678	74594209	C17orf77|NM_001302809.1	+	74584678,74590518,74591983	74584914,74590745,74594209	0.518160
SK_MEL_5	chr9	5368592	5368593	5368592	+	RAMPAGE_only	7	7	7	0.278400	2.807355	chr9	5367068	5368739	LINE|L1|L1PA16	+	chr9	5890801	5910606	MLANA|ENST00000381477.7	+	5890801,5892449,5897556,5906884,5908639	5890936,5892551,5897653,5906998,5910606	1.000000
SK_MEL_5	chr3	169756807	169756808	169756807	-	RAMPAGE_only	56	73	73	2.903310	4.116051	chr3	169756647	169756989	LTR|ERVL-MaLR|THE1A	-	chr3	169483670	169484080	RPL22P1|ENST00000418623.1	-	169483670	169484080	0.794521
SK_MEL_5	chr8	18083388	18083398	18083388	-	High_confidence	10	10	19	0.755656	3.302723	chr8	18083239	18083389	SINE|MIR|MIR3	+	chr8	18056458	18083408	ASAH1|ENST00000636691.1	-	18056458,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18067219,18069791,18071299,18075540,18083121	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18064531,18067298,18069878,18071390,18075587,18083408	0.789474
SK_MEL_5	chr8	62164779	62164816	62164815	-	High_confidence	214	223	664	26.408188	6.250853	chr8	62164702	62165238	LINE|L1|L1PB1	+	chr8	62127837	62164856	STRG.56780.6	-	62127837,62164568	62135746,62164856	0.817771
SK_MEL_5	chr13	24580596	24580623	24580622	+	High_confidence	10	11	19	0.755656	3.892407	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.947368
SK_MEL_5	chr2	37342758	37342827	37342792	+	High_confidence	45	50	278	11.056440	5.438987	chr2	37342693	37343084	LTR|ERVL|LTR16A	+	chr2	37342826	37367290	QPCT|ENST00000650442.1	+	37342826,37352788,37359579,37367231	37342923,37352935,37359858,37367290	0.892086
SK_MEL_5	chrX	97160141	97160189	97160164	+	RAMPAGE_only	10	13	46	1.829483	4.615809	chrX	97159909	97160444	LTR|ERV1|LTR26	-	chrX	96760744	97469835	STRG.118057.5	+	96760744,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348115,97383908,97429649,97469693	96761985,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247839,97348280,97384044,97429745,97469835	0.804348
SK_MEL_5	chr12	66154182	66154204	66154203	-	RAMPAGE_only	16	17	50	1.988568	4.833798	chr12	66154157	66154447	LINE|L2|L2c	+	chr12	66137828	66138937	TMBIM4|ENST00000538217.1	-	66137828,66138723	66138166,66138937	0.560000
SK_MEL_5	chr11	123060135	123060256	123060183	-	High_confidence	40	46	676	26.885444	5.572379	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.637574
SK_MEL_5	chr5	31538044	31538047	31538044	+	High_confidence	7	7	14	0.556799	3.238901	chr5	31537737	31538167	LTR|ERVL-MaLR|MLT1J	-	chr5	31538172	31545714	C5orf22|ENST00000510530.1	+	31538172,31540948,31541280,31545645	31538689,31541011,31541402,31545714	0.857143
SK_MEL_5	chr9	20658568	20658607	20658585	+	High_confidence	11	18	86	3.420338	4.477418	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658325	20674134	STRG.60849.14	+	20658325,20673619	20658826,20674134	0.825581
SK_MEL_5	chr18	32041845	32041882	32041872	+	High_confidence	15	17	86	3.420338	5.301809	chr18	32041620	32041929	SINE|Alu|AluYa5	-	chr18	32041905	32068550	RNF125|ENST00000583814.5	+	32041905,32045641,32068297	32042273,32045732,32068550	0.906977
SK_MEL_5	chr11	64226142	64226180	64226158	-	High_confidence	91	94	371	14.755177	6.798280	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.954178
SK_MEL_5	chr4	170980076	170980086	170980085	+	High_confidence	11	11	32	1.272684	3.719852	chr4	170979958	170980158	LINE|L1|L1PB1	-	chr4	170979300	170994416	STRG.32817.1	+	170979300,170993736	170979383,170994416	0.968750
SK_MEL_5	chr4	150944039	150944046	150944045	-	High_confidence	7	8	13	0.517028	3.026987	chr4	150943828	150944250	LTR|ERVL-MaLR|MLT1F	+	chr4	150265025	150944044	STRG.32397.4	-	150265025,150277852,150282449,150285932,150302624,150310228,150315560,150321190,150325808,150349991,150415437,150435588,150436723,150467672,150471623,150487731,150490917,150588047,150590712,150599006,150683550,150735257,150761782,150798080,150806270,150808319,150817123,150828179,150831816,150844099,150844657,150848817,150849421,150850723,150851884,150867670,150868181,150870524,150871344,150872662,150893051,150896393,150897738,150900048,150905837,150906296,150908333,150908659,150914194,150915607,150916400,150916616,150921197,150928515,150928833,150943867	150265812,150278004,150282646,150286034,150302792,150310384,150315623,150321368,150325898,150350159,150415590,150435708,150436864,150467785,150471739,150487834,150491035,150588184,150590859,150599131,150683717,150735366,150761847,150798142,150806404,150808398,150817257,150828621,150831976,150844207,150844779,150848998,150849575,150850902,150852943,150867863,150868305,150870606,150871453,150872755,150893149,150896456,150897818,150900217,150905990,150906405,150908467,150908857,150914341,150915727,150916527,150916738,150921293,150928616,150929065,150944044	1.000000
SK_MEL_5	chr14	43949454	43949479	43949454	-	High_confidence	2	2	8	0.318171	2.521641	chr14	43949256	43949741	LTR|Gypsy|LTR81B	-	chr14	43948558	43950056	STRG.85816.3	-	43948558	43950056	0.750000
SK_MEL_5	chr2	144925083	144925140	144925083	+	RAMPAGE_only	120	121	592	23.544649	7.547147	chr2	144924876	144925277	LTR|ERVL-MaLR|MLT1F2	+	chr2	145023227	145182430	TEX41|ENST00000629460.2	+	145023227,145072523,145171997,145182203	145023273,145072823,145172131,145182430	0.528716
SK_MEL_5	chr13	83102345	83102358	83102345	-	High_confidence	50	50	208	8.272444	6.071665	chr13	83102229	83102468	SINE|Alu|AluY	+	chr13	83091177	83102360	STRG.83634.4	-	83091177,83099292,83102137	83091512,83099403,83102360	0.735577
SK_MEL_5	chr15	92724477	92724510	92724478	+	High_confidence	9	18	78	3.102167	5.025930	chr15	92724497	92724811	LINE|L1|L1M6	+	chr15	92724489	92727658	STRG.92237.1	+	92724489,92727208	92724583,92727658	0.948718
SK_MEL_5	chr5	14202692	14202697	14202696	+	High_confidence	116	131	210	8.351987	5.986072	chr5	14202502	14202919	LTR|ERVL-MaLR|THE1B	+	chr5	14202706	14290887	STRG.34113.14	+	14202706,14270824,14280321,14286870,14290715	14203314,14270899,14280436,14287063,14290887	0.895238
SK_MEL_5	chr14	67821184	67821187	67821186	+	High_confidence	5	8	9	0.357942	2.750000	chr14	67821104	67821321	LINE|L2|L2c	+	chr14	67820775	68541257	STRG.86966.6	+	67820775,67823541,67825463,67835079,67865002,67885868,67887020,68291883,68411423,68468171,68540199	67821874,67823627,67825577,67835196,67865139,67885988,67887204,68291980,68411527,68468250,68541257	0.888889
SK_MEL_5	chr2	3536857	3536887	3536862	-	High_confidence	6	6	47	1.869254	4.780875	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.936170
SK_MEL_5	chr4	28402876	28402908	28402894	-	High_confidence	18	21	73	2.903310	5.318755	chr4	28402359	28403146	LTR|ERV1|LTR1A2	-	chr4	28362278	28402701	AC109588.1|ENST00000507759.5	-	28362278,28370699,28393203,28394195,28402651	28362592,28370809,28393350,28394300,28402701	0.602740
SK_MEL_5	chr15	78306575	78306578	78306577	-	RAMPAGE_only	4	8	10	0.397714	3.321928	chr15	78306427	78306552	LINE|CR1|L3	-	chr15	78283234	78299794	WDR61|ENST00000267973.6	-	78283234,78285260,78286040,78288288,78289618,78289950,78292615,78293166,78294945,78295674,78299561	78283521,78285339,78286133,78288382,78289712,78290099,78292788,78293272,78294973,78295725,78299794	0.900000
SK_MEL_5	chr5	151669675	151669719	151669675	-	RAMPAGE_only	10	10	33	1.312455	3.616729	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.969697
SK_MEL_5	chr6	137693037	137693062	137693043	+	High_confidence	4	4	14	0.556799	2.873141	chr6	137691890	137693871	LTR|ERVL|ERVL-int	+	chr6	137693077	137700386	STRG.46078.1	+	137693077,137698676	137693227,137700386	0.857143
SK_MEL_5	chr11	22317830	22317869	22317868	-	High_confidence	13	16	41	1.630626	4.275490	chr11	22317577	22318319	LTR|ERV1|LTR17	-	chr11	22255724	22317995	STRG.70727.2	-	22255724,22262168,22281541,22283729,22301279,22305656,22307236,22317546	22257257,22262254,22281643,22283824,22301399,22305807,22307374,22317995	0.902439
SK_MEL_5	chr9	67613813	67613843	67613813	-	High_confidence	3	3	12	0.477256	2.855389	chr9	67613657	67613994	LTR|ERVL|MER74B	-	chr9	67613221	67613697	STRG.61867.1	-	67613221	67613697	0.583333
SK_MEL_5	chr9	83026523	83026556	83026523	-	RAMPAGE_only	3	3	15	0.596571	3.906891	chr9	83026313	83026686	LTR|ERVL-MaLR|THE1D	-	chr9	82979584	83063128	RASEF|NM_152573.3	-	82979584,82990390,82992905,82997011,82998364,83000168,83000432,83000895,83004497,83005415,83007436,83009640,83012433,83015804,83022335,83025774,83062436	82982782,82990467,82993025,82997126,82998446,83000316,83000570,83001130,83004586,83005500,83007505,83009756,83012511,83015900,83022426,83025921,83063128	0.933333
SK_MEL_5	chr6	89654466	89654492	89654491	-	RAMPAGE_only	33	42	153	6.085019	5.666132	chr6	89654446	89654582	SINE|MIR|MIRc	+	chr6	89642498	89819723	MDN1|ENST00000369393.7	-	89642498,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89706058,89707360,89708495,89710680,89712035,89712574,89713147,89714542,89715652,89716649,89718365,89718766,89719135,89722954,89723511,89725198,89727832,89728930,89730725,89732556,89738325,89740233,89743149,89743575,89745272,89745491,89747328,89749222,89749542,89750353,89751430,89753511,89754082,89756276,89758254,89758815,89761644,89762318,89771560,89772572,89774620,89776599,89780211,89781398,89785011,89787853,89789779,89790158,89793761,89794099,89794576,89803327,89819505	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89706192,89707476,89708628,89710794,89712256,89712786,89713296,89714751,89715769,89716809,89718627,89719030,89719225,89723143,89723619,89725396,89727955,89729139,89730923,89732775,89738455,89740378,89743280,89743714,89745411,89745626,89747470,89749369,89749751,89750532,89751582,89753622,89754230,89756390,89758351,89758960,89761748,89762530,89771621,89772721,89774733,89776695,89780293,89781592,89785126,89787957,89789911,89790401,89793954,89794207,89794801,89803554,89819723	0.993464
SK_MEL_5	chr11	38337039	38337057	38337039	-	High_confidence	2	2	8	0.318171	2.500000	chr11	38337000	38337314	SINE|Alu|AluY	+	chr11	38277218	38337124	STRG.71217.1	-	38277218,38325174,38336836	38278075,38325269,38337124	0.750000
SK_MEL_5	chr14	101731384	101731433	101731413	+	High_confidence	132	133	381	15.152891	6.756667	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.887139
SK_MEL_5	chr7	104804434	104804442	104804441	-	High_confidence	3	3	7	0.278400	2.584963	chr7	104804405	104804953	LTR|ERVL-MaLR|MLT1F2	+	chr7	104796515	104804107	LHFPL3-AS1|ENST00000434579.6	-	104796515,104798336,104799817,104802838,104803955	104796949,104798407,104800069,104802963,104804107	0.714286
SK_MEL_5	chr8	107336500	107336581	107336500	-	High_confidence	132	148	923	36.708972	5.082323	chr8	107336384	107336688	SINE|Alu|AluY	+	chr8	107249481	107336515	ANGPT1|NM_001314051.1	-	107249481,107264220,107284681,107293935,107303239,107321895,107336149,107336383	107252015,107264351,107284848,107294037,107303367,107322128,107336271,107336515	0.990249
SK_MEL_5	chr17	40778033	40778050	40778046	-	High_confidence	38	42	117	4.653250	3.822831	chr17	40777904	40778097	LINE|RTE-BovB|MamRTE1	-	chr17	40776807	40778020	KRT27|ENST00000540723.1	-	40776807,40777252,40777514,40777849	40777138,40777302,40777732,40778020	0.923077
SK_MEL_5	chr4	6673446	6673447	6673446	+	High_confidence	26	26	26	1.034056	3.580462	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	1.000000
SK_MEL_5	chr4	189722269	189722291	189722290	-	High_confidence	9	9	32	1.272684	4.582913	chr4	189721949	189722303	LINE|L1|L1M3b	+	chr4	189705109	189722333	STRG.33390.3	-	189705109,189722176	189708489,189722333	0.593750
SK_MEL_5	chr4	14944915	14944948	14944915	+	High_confidence	233	250	721	28.675156	6.259708	chr4	14944820	14945113	SINE|Alu|AluYa5	-	chr4	14944926	14950008	STRG.28836.1	+	14944926,14949045	14945176,14950008	0.918169
SK_MEL_5	chr17	61245265	61245328	61245309	+	High_confidence	77	105	724	28.794470	6.696085	chr17	61244998	61245371	LTR|ERVL-MaLR|THE1C	-	chr17	61245259	61392273	BCAS3|ENST00000588569.1	+	61245259,61354361,61368326,61380505,61388617,61391976	61245371,61354502,61368494,61380571,61388708,61392273	0.820442
SK_MEL_5	chr16	21612296	21612367	21612296	+	High_confidence	29	34	161	6.403190	5.475682	chr16	21612297	21612508	SINE|MIR|MIRc	+	chr16	21612099	21625115	METTL9|ENST00000562961.1	+	21612099,21612644,21617864,21624930	21612298,21612835,21618074,21625115	0.819876
SK_MEL_5	chr3	155452289	155452321	155452292	-	RAMPAGE_only	17	17	67	2.664682	4.022520	chr3	155452061	155452414	LTR|ERVL-MaLR|THE1A	-	chr3	155375579	155676416	PLCH1|ENST00000494598.5	-	155375579,155485355,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155375789,155485710,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676416	0.850746
SK_MEL_5	chr9	120471823	120471871	120471823	-	RAMPAGE_only	3	3	18	0.715885	3.503258	chr9	120471770	120471851	LINE|L2|L2	+	chr9	120439517	120539120	STRG.64001.6	-	120439517,120443619,120447894,120453455,120458449,120460571,120467859,120470110,120471747,120475031,120475205,120475663,120487293,120491306,120518426,120524985,120527805,120528743,120529977,120536371,120539040	120439972,120443742,120448126,120453873,120458622,120460667,120467997,120470220,120471878,120475106,120475281,120477450,120487437,120491477,120518645,120525078,120527925,120528797,120530140,120536526,120539120	1.000000
SK_MEL_5	chr7	82894474	82894477	82894476	-	High_confidence	5683	10242	12809	509.431442	7.669044	chr7	82894311	82894657	LTR|ERVL-MaLR|THE1B	-	chr7	82822096	82894454	PCLO|ENST00000426442.6	-	82822096,82824235,82826588,82827872,82838217,82841458,82845270,82846566,82847146,82879336,82894396	82822689,82824416,82826660,82827966,82838342,82841509,82845485,82846634,82847247,82879462,82894454	0.751269
SK_MEL_5	chr14	42560279	42560283	42560279	-	High_confidence	8	8	18	0.715885	3.337175	chr14	42560122	42560478	LTR|ERVL-MaLR|THE1A	-	chr14	42535251	42560262	STRG.85773.3	-	42535251,42560198	42535672,42560262	0.500000
SK_MEL_5	chr19	48270045	48270046	48270045	+	High_confidence	8	8	10	0.397714	2.921928	chr19	48269716	48270187	LTR|ERV1|LTR7C	+	chr19	48270098	48287608	ZNF114|NM_153608.2	+	48270098,48271244,48271726,48279730,48282370,48285760	48270219,48271449,48271828,48279808,48282497,48287608	0.900000
SK_MEL_5	chr7	136092891	136092925	136092924	+	High_confidence	299	321	443	17.618716	7.210130	chr7	136092728	136093088	LTR|ERVL-MaLR|THE1A	+	chr7	136092924	136437163	AC078845.1|ENST00000445293.6	+	136092924,136117070,136177251,136242149,136328981,136405269,136437051	136093036,136117188,136177413,136242371,136329097,136405316,136437163	0.634312
SK_MEL_5	chr4	37001803	37001812	37001805	+	High_confidence	166	180	285	11.334840	6.302195	chr4	37001705	37002035	LTR|ERV1|MER48	+	chr4	37001815	37020708	AL136537.2|ENST00000562049.1	+	37001815,37018317	37001895,37020708	0.877193
SK_MEL_5	chr18	1522233	1522240	1522239	-	High_confidence	20	30	45	1.789712	4.638378	chr18	1516189	1522240	LINE|L1|L1PA2	-	chr18	1513906	1522181	STRG.101844.1	-	1513906,1514276,1522143	1514047,1514413,1522181	0.955556
SK_MEL_5	chr3	15341431	15341451	15341450	-	High_confidence	10	10	18	0.715885	3.690117	chr3	15341407	15341757	LTR|ERVL-MaLR|THE1D	+	chr3	15254352	15341394	SH3BP5|NM_001018009.3	-	15254352,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341394	0.944444
SK_MEL_5	chr11	75031362	75031412	75031362	-	High_confidence	12	12	103	4.096451	5.684907	chr11	75031343	75031611	LINE|L2|L2	+	chr11	75029938	75031422	STRG.73035.1	-	75029938	75031422	0.980583
SK_MEL_5	chr5	78597192	78597235	78597192	-	RAMPAGE_only	6	6	33	1.312455	4.051109	chr5	78597048	78597156	DNA|hAT-Charlie|MER5B	-	chr5	78510038	78590192	LHFPL2|ENST00000510949.1	-	78510038,78564812,78590077	78510398,78564871,78590192	0.787879
SK_MEL_5	chr11	78469756	78469776	78469769	-	RAMPAGE_only	15	18	61	2.426053	3.096452	chr11	78469641	78470190	LINE|L2|L2a	-	chr11	78436188	78443759	NARS2|ENST00000529771.1	-	78436188,78443660	78436814,78443759	0.950820
SK_MEL_5	chr7	47401193	47401224	47401193	-	RAMPAGE_only	13	13	63	2.505596	5.098168	chr7	47401190	47401377	LINE|CR1|L3b	-	chr7	47275160	47403425	STRG.49734.1	-	47275160,47280163,47280285,47283696,47291954,47292827,47293732,47297081,47302185,47302949,47304831,47344754,47344923,47346186,47368364,47396799,47400392,47400784,47403267	47278220,47280190,47280354,47283865,47292032,47292905,47293828,47297213,47302272,47303584,47305003,47344838,47345038,47346356,47369621,47396904,47400458,47400914,47403425	0.936508
SK_MEL_5	chr9	72931516	72931544	72931528	-	High_confidence	4	5	13	0.517028	2.855389	chr9	72931287	72931516	SINE|MIR|MIR	-	chr9	72900670	72931494	STRG.62204.2	-	72900670,72905957,72909601,72911957,72916919,72918719,72924018,72925483,72927115,72928891,72930878,72931226	72901280,72906032,72909759,72912122,72917104,72918822,72924132,72925612,72927177,72929021,72931019,72931494	0.923077
SK_MEL_5	chr2	202966037	202966064	202966063	+	RAMPAGE_only	6	6	26	1.034056	3.703465	chr2	202965833	202966297	LTR|ERVL-MaLR|MLT1F2	-	chr2	202912734	202983990	CARF|NM_001322428.1	+	202912734,202917876,202941859,202942739,202952558,202954004,202955673,202961236,202966977,202969918,202971504,202974333,202977268,202981554,202982071,202983505	202913114,202918043,202941980,202942967,202952679,202954134,202955758,202961426,202967098,202970062,202971738,202974496,202977332,202981685,202982441,202983990	0.730769
SK_MEL_5	chr17	47067498	47067518	47067498	-	High_confidence	204	230	870	34.601089	5.890877	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.928736
SK_MEL_5	chr17	4143196	4143215	4143199	+	High_confidence	291	307	564	22.431051	5.822459	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.996454
SK_MEL_5	chrX	15820563	15820604	15820591	+	RAMPAGE_only	12	14	56	2.227197	4.162001	chrX	15820493	15820591	SINE|MIR|MIR3	-	chrX	15790471	15823260	ZRSR2|ENST00000307771.7	+	15790471,15790933,15799871,15803687,15804110,15808232,15809199,15815676,15818586,15820206,15822730	15790536,15791013,15799953,15803796,15804197,15808271,15809318,15815890,15818642,15820316,15823260	0.946429
SK_MEL_5	chr19	44914321	44914322	44914321	+	High_confidence	122	122	144	5.727077	5.427661	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.951389
SK_MEL_5	chr12	110440319	110440320	110440319	-	RAMPAGE_only	7	7	9	0.357942	2.947703	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.888889
SK_MEL_5	chr1	14175204	14175218	14175217	+	RAMPAGE_only	6	7	22	0.874970	3.784942	chr1	14175099	14175402	SINE|Alu|AluY	-	chr1	13892791	14304663	KAZN|ENST00000636564.1	+	13892791,14180434,14304589	13893756,14180592,14304663	0.500000
SK_MEL_5	chr20	46571074	46571075	46571074	-	RAMPAGE_only	28	28	31	1.232912	2.977286	chr20	46570896	46571269	LTR|ERVL-MaLR|THE1C	-	chr20	46558489	46583850	STRG.110759.3	-	46558489,46560288,46563413,46566228,46575572,46583571	46560198,46560468,46563551,46566390,46575685,46583850	1.000000
SK_MEL_5	chr3	107202212	107202221	107202212	-	RAMPAGE_only	6	6	13	0.517028	2.855389	chr3	107202050	107202173	SINE|MIR|MIRc	-	chr3	107111484	107240627	LINC00882|ENST00000479612.6	-	107111484,107129887,107240442	107112146,107129992,107240627	0.538462
SK_MEL_5	chr9	93146866	93146867	93146866	+	RAMPAGE_only	8	8	12	0.477256	3.251629	chr9	93146672	93147033	LTR|ERVL-MaLR|THE1B	+	chr9	93148863	93149265	STRG.62788.1	+	93148863	93149265	0.583333
SK_MEL_5	chr12	110172547	110172665	110172664	+	High_confidence	5	7	51	2.028340	4.918563	chr12	110172360	110173979	Retroposon|SVA|SVA_D	+	chr12	110171906	110218560	STRG.79899.5	+	110171906,110180421,110190919,110192616,110203863,110205442,110205594,110209170,110218043	110172086,110180571,110191048,110192706,110203950,110205514,110205680,110209216,110218560	0.745098
SK_MEL_5	chr3	114625006	114625034	114625006	-	High_confidence	5	6	12	0.477256	3.251629	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.916667
SK_MEL_5	chr15	90762359	90762407	90762400	+	High_confidence	21	21	111	4.414622	5.589600	chr15	90762254	90762815	LINE|L2|L2b	-	chr15	90762395	90811327	BLM|ENST00000560136.5	+	90762395,90762965,90766909,90769132,90769437,90782821,90784920,90790648,90794166,90798189,90803520,90804166,90809136,90811204	90762422,90763157,90767023,90769231,90769586,90782928,90785081,90790844,90794357,90798337,90803720,90804359,90809259,90811327	0.657658
SK_MEL_5	chr8	27779685	27779724	27779723	+	RAMPAGE_only	12	12	54	2.147654	4.168025	chr8	27779678	27779963	SINE|Alu|AluSc	-	chr8	27775496	27780095	ESCO2|ENST00000524293.1	+	27775496,27776361	27775567,27780095	0.666667
SK_MEL_5	chr9	138169029	138169030	138169029	-	RAMPAGE_only	7	7	9	0.357942	2.725481	chr9	138168895	138169223	LTR|ERVL-MaLR|THE1C	+	chr9	138163089	138173189	STRG.65285.1	-	138163089,138167715,138172749	138164048,138167813,138173189	0.777778
SK_MEL_5	chr13	69178589	69178599	69178598	+	RAMPAGE_only	5	5	15	0.596571	2.606239	chr13	69178512	69178705	LINE|L1|HAL1	+	chr13	69183147	69183352	STRG.83089.1	+	69183147	69183352	0.600000
SK_MEL_5	chr9	12699292	12699293	12699292	+	High_confidence	10	10	13	0.517028	2.968919	chr9	12699242	12699384	LINE|L1|L1M5	-	chr9	12698505	12710290	STRG.60514.3	+	12698505,12702270,12704525,12707996,12708976	12701408,12702438,12704705,12708143,12710290	1.000000
SK_MEL_5	chr2	108607144	108607147	108607146	+	High_confidence	253	320	394	15.669919	4.784519	chr2	108606979	108607192	LTR|ERVL-MaLR|MLT1A0	+	chr2	108607160	108684448	LIMS1|ENST00000410093.5	+	108607160,108659604,108670780,108672324,108672879,108675877,108676605,108677978,108680694,108683884	108607255,108659764,108670847,108672445,108673029,108676028,108676698,108678027,108680770,108684448	0.954315
SK_MEL_5	chr3	93879166	93879190	93879189	-	RAMPAGE_only	6	6	16	0.636342	3.240224	chr3	93878990	93879151	SINE|MIR|MIRb	-	chr3	93873108	93958754	PROS1|ENST00000648381.1	-	93873108,93876965,93879162,93884727,93886335,93892932,93896575,93898447,93900803,93905783,93906020,93910618,93924239,93927249,93958510	93874405,93877191,93879314,93884896,93886503,93893122,93896691,93898569,93900929,93905915,93906143,93910705,93924264,93927407,93958754	0.937500
SK_MEL_5	chr22	50756835	50756862	50756835	+	High_confidence	2	2	7	0.278400	2.807355	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50759315	STRG.115621.10	+	50756947,50759133	50757326,50759315	0.857143
SK_MEL_5	chr7	101308299	101308316	101308299	+	High_confidence	7	8	17	0.676113	3.337175	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.882353
SK_MEL_5	chr8	18063197	18063216	18063197	-	High_confidence	22	22	87	3.460109	5.094911	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.988506
SK_MEL_5	chr8	32927967	32927977	32927976	+	High_confidence	1253	1308	2310	91.871858	7.027635	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927974	33049535	STRG.55937.2	+	32927974,32996200,33041634,33044366	32928093,32996316,33041743,33049535	0.961472
SK_MEL_5	chr7	104802861	104803021	104802989	-	High_confidence	14	14	209	8.312216	6.421912	chr7	104802722	104803154	LINE|L2|L2	+	chr7	104799392	104803539	LHFPL3-AS1|ENST00000450896.1	-	104799392,104802838,104803451	104800069,104802963,104803539	0.559809
SK_MEL_5	chr7	145784963	145784982	145784981	+	High_confidence	9	9	15	0.596571	3.106891	chr7	145784929	145785235	LTR|ERV1|MER50B	+	chr7	145785010	145848633	STRG.54150.2	+	145785010,145848295	145785433,145848633	0.800000
SK_MEL_5	chr1	202551726	202551752	202551736	+	High_confidence	35	38	213	8.471301	6.271144	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202551006	202590817	STRG.8352.5	+	202551006,202553076,202558876,202562777,202564442,202567777,202569146,202580473	202552057,202553120,202558893,202562922,202564547,202567831,202569197,202590817	0.948357
SK_MEL_5	chr11	43881142	43881158	43881157	+	High_confidence	4	4	8	0.318171	2.500000	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.750000
SK_MEL_5	chr14	83638965	83638976	83638971	+	High_confidence	6	11	30	1.193141	3.631402	chr14	83638774	83639162	LTR|ERVL-MaLR|THE1D	+	chr14	83638995	83658615	STRG.87654.1	+	83638995,83639304,83646543,83658422	83639086,83639395,83646654,83658615	0.633333
SK_MEL_5	chr19	3539551	3539853	3539653	-	High_confidence	34	37	332	13.204094	5.834274	chr19	3539542	3539854	LTR|ERVL-MaLR|MLT1C	-	chr19	3539353	3540041	MFSD12|ENST00000615613.1	-	3539353	3540041	0.587349
SK_MEL_5	chr7	30562849	30562850	30562849	-	High_confidence	79	95	99	3.937365	5.645978	chr7	30562659	30563014	LTR|ERVL-MaLR|THE1D	-	chr7	30516308	30562825	GARS-DT|ENST00000434399.5	-	30516308,30524366,30550635,30561465,30562741	30516512,30524486,30550781,30562128,30562825	0.676768
SK_MEL_5	chr6	68576168	68576193	68576192	-	High_confidence	143	186	484	19.249342	6.697720	chr6	68576052	68576220	DNA|hAT-Charlie|MER1B	+	chr6	68536378	68576178	STRG.43554.4	-	68536378,68576044	68537627,68576178	0.652893
SK_MEL_5	chr12	91179525	91179562	91179548	-	High_confidence	6	6	26	1.034056	4.008132	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91175117	91179533	DCN|ENST00000551354.1	-	91175117,91178341,91179361	91177625,91178585,91179533	0.576923
SK_MEL_5	chr11	72252788	72252790	72252788	+	RAMPAGE_only	5	8	11	0.437485	2.921928	chr11	72252591	72252896	LTR|ERVL-MaLR|THE1B	+	chr11	72300732	72302390	STRG.72855.1	+	72300732,72302138	72300929,72302390	0.818182
SK_MEL_5	chr2	79229436	79229437	79229436	+	RAMPAGE_only	202	205	238	9.465585	5.700494	chr2	79229241	79229597	LTR|ERVL-MaLR|THE1A	+	chr2	79281463	79340163	CTNNA2|ENST00000496251.5	+	79281463,79312708,79319711,79319809,79339614,79339947	79281535,79312796,79319724,79319905,79339862,79340163	0.621849
SK_MEL_5	chr4	79086260	79086262	79086260	+	RAMPAGE_only	4	8	8	0.318171	2.500000	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.750000
SK_MEL_5	chr9	106450815	106450822	106450821	+	High_confidence	5	6	9	0.357942	2.725481	chr9	106450433	106450967	LTR|ERVL-MaLR|MLT1G1	+	chr9	106450815	106604795	LINC01505|ENST00000425709.1	+	106450815,106558471,106588376,106603755	106450888,106558583,106588464,106604795	1.000000
SK_MEL_5	chr17	42815090	42815091	42815090	-	High_confidence	14	16	19	0.755656	3.614369	chr17	42814830	42815625	LINE|L2|L2b	+	chr17	42810309	42814673	BECN1|ENST00000588276.5	-	42810309,42814523	42810928,42814673	0.684211
SK_MEL_5	chr12	6493605	6493618	6493605	-	High_confidence	2	3	7	0.278400	2.521641	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	1.000000
SK_MEL_5	chr4	132345665	132345666	132345665	-	High_confidence	5	7	8	0.318171	2.500000	chr4	132344948	132345659	LINE|L1|L1PA10	-	chr4	132335585	132345582	STRG.31967.1	-	132335585,132345566	132335822,132345582	0.500000
SK_MEL_5	chr7	141737468	141737480	141737468	+	High_confidence	4	4	11	0.437485	2.663533	chr7	141736645	141737590	DNA|TcMar-Tigger|Tigger3b	+	chr7	141738320	141750461	SSBP1|ENST00000265304.10	+	141738320,141739123,141742168,141743560,141743901,141745495,141750310	141738410,141739190,141742229,141743701,141743989,141745584,141750461	1.000000
SK_MEL_5	chr13	100438676	100438677	100438676	+	RAMPAGE_only	11	14	14	0.556799	3.235926	chr13	100438447	100438841	LTR|ERVL|LTR47B2	+	chr13	100368471	100530432	PCCA|ENST00000458283.5	+	100368471,100425632,100449251,100527674,100530097	100368574,100425731,100449305,100527752,100530432	0.785714
SK_MEL_5	chr20	44887702	44887724	44887723	+	RAMPAGE_only	6	6	16	0.636342	2.905639	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885739	44901833	YWHAB|ENST00000428262.1	+	44885739,44887544,44901530	44885886,44887742,44901833	0.687500
SK_MEL_5	chr11	74929849	74929866	74929865	-	RAMPAGE_only	3	3	9	0.357942	3.000000	chr11	74929615	74929915	LINE|L2|L2c	+	chr11	74842967	74949116	XRRA1|ENST00000527087.5	-	74842967,74844167,74845072,74848114,74851087,74906238,74907144,74921213,74927390,74930299,74933824,74936883,74940784,74945017,74948927	74843453,74844283,74845271,74848462,74851203,74906456,74907273,74921347,74927488,74930372,74933872,74937068,74940882,74945085,74949116	0.666667
SK_MEL_5	chr7	47992191	47992206	47992205	-	High_confidence	6	7	15	0.596571	3.323231	chr7	47992098	47992580	LINE|L1|HAL1	+	chr7	47987150	47992188	STRG.49791.1	-	47987150,47988787,47992051	47987449,47988880,47992188	0.866667
SK_MEL_5	chr4	174154660	174154663	174154662	-	High_confidence	5	7	9	0.357942	2.725481	chr4	174154622	174154667	SINE|tRNA-Deu|AmnSINE2	+	chr4	174135054	174154637	AC012055.1|ENST00000511346.1	-	174135054,174154586	174136147,174154637	0.777778
SK_MEL_5	chr12	64034272	64034328	64034275	+	RAMPAGE_only	187	207	654	26.010474	5.072184	chr12	64034075	64034470	LTR|ERVL-MaLR|MSTA	+	chr12	64042793	64043627	SRGAP1|ENST00000542381.1	+	64042793,64043446	64042972,64043627	0.929664
SK_MEL_5	chr20	5010312	5010313	5010312	-	High_confidence	464	473	568	22.590137	6.712230	chr20	5010113	5010529	LTR|ERVL|MLT2B2	-	chr20	4852355	5010293	SLC23A2|ENST00000379333.5	-	4852355,4859288,4861947,4862777,4867769,4869905,4873935,4874575,4883641,4884752,4885820,4899554,4902441,4912879,4932454,4970792,5010181	4857204,4859384,4862085,4862907,4867875,4870053,4874092,4874696,4883823,4884823,4885909,4899712,4902558,4912978,4932716,4970919,5010293	0.899648
SK_MEL_5	chr14	102234507	102234542	102234507	-	High_confidence	4	5	22	0.874970	3.784184	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102231745	102234153	MOK|ENST00000520046.1	-	102231745,102232534,102233687	102231821,102232671,102234153	0.500000
SK_MEL_5	chr10	58320610	58320614	58320613	+	High_confidence	6	7	16	0.636342	3.323231	chr10	58320259	58320667	LTR|ERVL-MaLR|MSTC	-	chr10	58320590	58370751	STRG.66787.2	+	58320590,58361337,58361494,58363608,58364770,58367922,58368719	58321194,58361401,58361526,58363686,58364876,58368016,58370751	0.812500
SK_MEL_5	chr1	45191284	45191301	45191300	-	High_confidence	4	4	13	0.517028	3.180833	chr1	45191232	45191412	LTR|ERVL|LTR16A	-	chr1	45019472	45191277	STRG.2874.2	-	45019472,45020624,45034311,45035687,45036038,45038935,45040391,45043218,45051073,45058608,45060098,45087880,45190764	45020147,45020788,45034469,45035823,45036299,45039073,45040538,45043395,45051253,45058759,45060247,45088237,45191277	1.000000
SK_MEL_5	chr9	127451087	127451128	127451104	-	High_confidence	18	18	65	2.585139	4.564464	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.984615
SK_MEL_5	chr20	3795750	3795789	3795750	+	High_confidence	69	76	328	13.045008	5.730778	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.987805
SK_MEL_5	chr13	91878694	91878715	91878697	+	RAMPAGE_only	4	4	10	0.397714	3.121928	chr13	91878498	91878864	LTR|ERVL-MaLR|THE1C	+	chr13	91398618	92867237	GPC5|NM_004466.5	+	91398618,91448760,91693186,91728531,91756294,91907936,92144829,92866281	91399209,91448922,91693881,91728665,91756420,91908057,92144989,92867237	0.500000
SK_MEL_5	chr11	56848542	56848568	56848567	+	High_confidence	15	22	47	1.869254	4.314309	chr11	56848566	56849571	DNA|TcMar-Tigger|Tigger12	+	chr11	56848567	56878078	AP001803.2|ENST00000526436.1	+	56848567,56871090,56875596	56848615,56871251,56878078	0.574468
SK_MEL_5	chr9	5909306	5909392	5909306	+	RAMPAGE_only	4	4	44	1.749940	4.572624	chr9	5909266	5909556	SINE|Alu|AluSp	-	chr9	5890908	5909822	MLANA|NM_005511.1	+	5890908,5892449,5897556,5906884,5908639	5890936,5892551,5897653,5906998,5909822	0.727273
SK_MEL_5	chr1	33021429	33021455	33021446	-	High_confidence	9	9	21	0.835199	3.041446	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010518	33021690	STRG.2028.7	-	33010518,33014521,33021366,33021592	33013402,33014594,33021461,33021690	0.952381
SK_MEL_5	chr2	86211329	86211330	86211329	-	High_confidence	27	33	34	1.352226	3.804229	chr2	86211143	86211421	LTR|ERVL-MaLR|MLT1M	-	chr2	86207188	86211321	STRG.14347.2	-	86207188,86210479	86207327,86211321	0.882353
SK_MEL_5	chr5	147839237	147839243	147839237	-	High_confidence	17	19	36	1.431769	4.071582	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.916667
SK_MEL_5	chrX	141494916	141494917	141494916	+	RAMPAGE_only	19	19	19	0.755656	3.721612	chrX	141494718	141495075	LTR|ERVL-MaLR|THE1A	+	chrX	141502848	141649939	SPANXA2-OT1|NR_037183.2	+	141502848,141514711,141520471,141648798	141503239,141514829,141520519,141649939	0.526316
SK_MEL_5	chr4	32010199	32010237	32010220	-	High_confidence	319	409	1613	64.151215	6.773465	chr4	32009763	32010888	LINE|L1|L1PA8A	+	chr4	32003152	32010217	STRG.29641.1	-	32003152,32007666,32009751,32010117	32006022,32007713,32009815,32010217	0.985741
SK_MEL_5	chr3	185299211	185299213	185299212	+	RAMPAGE_only	8	14	17	0.676113	2.771902	chr3	185299045	185299424	LINE|L1|L1MCc	+	chr3	185282976	185482456	MAP3K13|ENST00000424227.5	+	185282976,185285524,185428496,185437446,185443444,185447788,185449899,185451286,185463549,185465746,185466825,185472974,185477325,185480231,185482354	185283027,185285643,185429056,185437630,185443636,185447947,185450058,185451395,185463659,185465863,185466963,185473761,185477396,185480529,185482456	0.941176
SK_MEL_5	chr8	18083282	18083298	18083297	-	High_confidence	10	11	23	0.914741	3.725651	chr8	18083239	18083389	SINE|MIR|MIR3	+	chr8	18056458	18083408	ASAH1|ENST00000636691.1	-	18056458,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18067219,18069791,18071299,18075540,18083121	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18064531,18067298,18069878,18071390,18075587,18083408	0.782609
SK_MEL_5	chr21	33945809	33945810	33945809	-	RAMPAGE_only	15	15	15	0.596571	2.923231	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
SK_MEL_5	chr19	35399508	35399603	35399538	+	High_confidence	556	582	1847	73.457715	7.197056	chr19	35399184	35399804	LTR|ERV1|MER49	+	chr19	35399581	35419370	STRG.106374.11	+	35399581,35406584,35409285,35419159	35399657,35409151,35411282,35419370	0.932323
SK_MEL_5	chr6	2972164	2972191	2972164	-	High_confidence	2	3	11	0.437485	3.321928	chr6	2971942	2972236	SINE|Alu|AluSz	+	chr6	2948158	2972165	SERPINB6|NM_001297699.1	-	2948158,2948913,2953043,2954591,2955523,2959167,2971247	2948699,2949069,2953186,2954709,2955670,2959342,2972165	0.909091
SK_MEL_5	chr3	69237171	69237186	69237171	-	RAMPAGE_only	5	5	24	0.954513	4.168296	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69195248	69200898	FRMD4B|ENST00000462512.1	-	69195248,69196254,69196899,69198697,69200811	69195364,69196396,69197038,69198774,69200898	0.625000
SK_MEL_5	chr11	13425079	13425086	13425085	-	RAMPAGE_only	3	3	8	0.318171	2.521641	chr11	13424680	13425657	LINE|L1|L1ME1	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.750000
SK_MEL_5	chr11	7677244	7677247	7677246	-	High_confidence	21	40	49	1.948797	4.614311	chr11	7677065	7677444	LTR|ERVL-MaLR|THE1C	-	chr11	7669204	7677222	CYB5R2|ENST00000524608.5	-	7669204,7669624,7672450,7672747,7674225,7677147	7669334,7669731,7672523,7672891,7674493,7677222	0.918367
SK_MEL_5	chr7	112452401	112452425	112452416	+	High_confidence	21	34	136	5.408906	4.850664	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112477203	IFRD1|NM_001197079.1	+	112452057,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112452511,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112477203	0.985294
SK_MEL_5	chr13	44508777	44508805	44508804	-	RAMPAGE_only	15	15	23	0.914741	3.823068	chr13	44508497	44508853	LINE|L2|L2c	+	chr13	44432142	44474301	TSC22D1|NM_001243798.1	-	44432142,44436043,44474217	44434883,44436095,44474301	0.956522
SK_MEL_5	chr11	26597182	26597205	26597182	-	High_confidence	42	44	98	3.897594	5.367566	chr11	26597150	26597675	LTR|ERV1|LTR17	-	chr11	26588813	26597569	STRG.70785.1	-	26588813,26597118	26591959,26597569	0.622449
SK_MEL_5	chr3	58526760	58526803	58526765	-	High_confidence	18	18	40	1.590855	4.381687	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	1.000000
SK_MEL_5	chr3	187021850	187021896	187021850	+	High_confidence	88	169	297	11.812096	5.436355	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.962963
SK_MEL_5	chr14	40954675	40954704	40954688	+	High_confidence	11	11	52	2.068111	4.638522	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954467	41106446	STRG.85742.2	+	40954467,40962789,40974339,41106296	40954952,40962842,40974390,41106446	0.615385
SK_MEL_5	chr11	73652676	73652707	73652706	+	High_confidence	4	4	17	0.676113	3.263933	chr11	73652673	73652766	SINE|MIR|MIR3	-	chr11	73652439	73662812	PLEKHB1|ENST00000426191.2	+	73652439,73660752,73661465	73653014,73660852,73662812	1.000000
SK_MEL_5	chr10	34405907	34405966	34405965	-	High_confidence	24	28	96	3.818051	5.548429	chr10	34405665	34405965	LTR|ERVL|LTR40b	-	chr10	34312263	34406202	STRG.66324.13	-	34312263,34317106,34331116,34336198,34337274,34341626,34347964,34359146,34360070,34374873,34377966,34382539,34384128,34399329,34401825,34405659	34312382,34317338,34331344,34336243,34337426,34341816,34348115,34359317,34360259,34375002,34378106,34382922,34384254,34399413,34401917,34406202	0.760417
SK_MEL_5	chr5	29899593	29899603	29899602	+	High_confidence	10	15	23	0.914741	2.658993	chr5	29899414	29899979	LTR|ERVL|MLT2B3	+	chr5	29899628	29899947	STRG.34474.1	+	29899628	29899947	0.565217
SK_MEL_5	chr7	100325807	100325846	100325845	-	RAMPAGE_only	9	9	20	0.795427	3.616349	chr7	100325611	100325998	LTR|ERVL-MaLR|MSTA	-	chr7	100318038	100335953	STRG.52173.3	-	100318038,100328835,100330181,100330462,100332441,100335674	100321084,100329019,100330284,100330549,100332581,100335953	0.650000
SK_MEL_5	chr8	28090280	28090325	28090294	+	High_confidence	4	4	22	0.874970	3.272804	chr8	28089941	28090482	LTR|ERVL|LTR66	+	chr8	28090345	28113173	ELP3|ENST00000521570.5	+	28090345,28097218,28099827,28106712,28107912,28110369,28113018	28090403,28097318,28099966,28106783,28107976,28110438,28113173	0.909091
SK_MEL_5	chr4	154708643	154708655	154708643	+	High_confidence	28	29	46	1.829483	4.539123	chr4	154708547	154708841	SINE|Alu|AluYm1	-	chr4	154708251	154731000	STRG.32522.11	+	154708251,154728702	154708334,154731000	0.543478
SK_MEL_5	chr12	55957039	55957516	55957039	-	RAMPAGE_only	133	134	2218	88.212892	7.397707	chr12	55957026	55957083	LINE|L2|L2	+	chr12	55955325	55958603	PMEL|ENST00000549404.5	-	55955325,55955463,55955778,55956102,55956948,55957185,55957922,55958472	55955382,55955669,55955863,55956219,55957059,55957671,55958084,55958603	0.711001
SK_MEL_5	chr2	42388580	42388611	42388610	-	High_confidence	6	6	13	0.517028	2.688722	chr2	42388448	42388792	LTR|ERVL-MaLR|MLT1B	-	chr2	42350940	42388507	COX7A2L|ENST00000607768.1	-	42350940,42353211,42388444	42351359,42353343,42388507	0.692308
SK_MEL_5	chr11	123061128	123061328	123061327	-	High_confidence	32	36	414	16.465346	6.001930	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.995169
SK_MEL_5	chr12	9407471	9407507	9407506	-	High_confidence	3722	4453	12576	500.164713	6.542915	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9397056	9407542	STRG.75566.1	-	9397056,9397614,9398381,9399794,9400235,9401746,9402426,9406307,9407307	9397214,9397689,9398484,9399863,9400326,9401859,9402556,9406398,9407542	0.980916
SK_MEL_5	chr14	32075821	32075822	32075821	+	High_confidence	18	18	18	0.715885	3.308271	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32075839	32154827	STRG.85313.1	+	32075839,32076457,32090501,32117139,32146262,32149901,32152422,32154620	32076217,32076657,32094386,32117287,32146340,32150033,32152528,32154827	1.000000
SK_MEL_5	chr11	14337230	14337263	14337262	-	High_confidence	5	5	22	0.874970	4.186704	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.727273
SK_MEL_5	chr10	58320856	58320897	58320884	+	High_confidence	22	23	98	3.897594	5.042997	chr10	58320721	58321272	LTR|ERVL|MLT2B3	+	chr10	58320590	58370751	STRG.66787.2	+	58320590,58361337,58361494,58363608,58364770,58367922,58368719	58321194,58361401,58361526,58363686,58364876,58368016,58370751	0.877551
SK_MEL_5	chr6	152717584	152717585	152717584	+	RAMPAGE_only	10	10	13	0.517028	2.873141	chr6	152717403	152717757	LTR|ERVL-MaLR|THE1B	+	chr6	152697960	152724501	MYCT1|ENST00000532295.1	+	152697960,152721741,152722762	152698098,152722253,152724501	1.000000
SK_MEL_5	chr20	30611731	30611744	30611743	-	High_confidence	6	7	13	0.517028	2.931209	chr20	30611589	30611771	LTR|ERVL|LTR33	+	chr20	30610095	30611742	STRG.109896.1	-	30610095,30610821,30611464	30610395,30611052,30611742	1.000000
SK_MEL_5	chr14	24595845	24595872	24595845	+	High_confidence	272	309	1204	47.884726	6.246763	chr14	24593738	24596300	LINE|L1|L1PB1	-	chr14	24595774	24657774	STRG.85022.1	+	24595774,24622967,24628357,24634295,24638594,24639180,24639902,24643264,24657524	24596002,24623470,24628423,24634577,24638692,24639245,24640628,24654707,24657774	0.950166
SK_MEL_5	chr9	1930378	1930382	1930381	-	High_confidence	7	8	18	0.715885	3.725481	chr9	1930210	1930573	LTR|ERVL-MaLR|THE1B	-	chr9	1926644	1930462	STRG.60119.1	-	1926644,1929259,1930114	1927453,1929331,1930462	0.611111
SK_MEL_5	chr1	236163668	236163669	236163668	+	RAMPAGE_only	461	484	592	23.544649	5.641899	chr1	236163473	236163830	LTR|ERVL-MaLR|THE1A	+	chr1	236168700	236208482	GPR137B|ENST00000454895.2	+	236168700,236178413,236179878,236183777,236205125,236208060	236168755,236178636,236180028,236183906,236205250,236208482	0.972973
SK_MEL_5	chrX	153357155	153357207	153357186	+	RAMPAGE_only	9	12	41	1.630626	4.061957	chrX	153356870	153357462	LTR|ERVL|LTR66	+	chrX	153352028	153360110	ZNF275|ENST00000438239.1	+	153352028,153357190,153359698	153352141,153357256,153360110	0.536585
SK_MEL_5	chr5	40883550	40883584	40883583	+	RAMPAGE_only	16	19	36	1.431769	4.233947	chr5	40883389	40883717	LTR|ERVL-MaLR|THE1A	+	chr5	40895095	40896641	STRG.35134.1	+	40895095	40896641	0.888889
SK_MEL_5	chr17	60305228	60305262	60305244	-	RAMPAGE_only	21	21	109	4.335079	5.560740	chr17	60305106	60305535	LTR|ERVL-MaLR|MSTB	-	chr17	60249057	60391975	USP32|ENST00000393003.7	-	60249057,60252380,60255174,60265411,60265975,60269449,60271349,60288522,60294682,60301598,60345480,60391881	60249753,60252442,60255258,60265474,60266091,60269557,60271481,60288682,60294801,60301704,60345608,60391975	0.834862
SK_MEL_5	chrX	97120041	97120073	97120072	+	RAMPAGE_only	5	5	12	0.477256	2.732159	chrX	97118912	97120566	LINE|L1|L1PBa1	-	chrX	96760744	97469835	STRG.118057.5	+	96760744,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348115,97383908,97429649,97469693	96761985,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247839,97348280,97384044,97429745,97469835	0.750000
SK_MEL_5	chr11	71564842	71564853	71564842	+	High_confidence	5	5	12	0.477256	3.022055	chr11	71564702	71565102	LTR|ERVL-MaLR|MSTB	+	chr11	71565562	71566738	KRTAP5-10|ENST00000398531.2	+	71565562	71566738	0.916667
SK_MEL_5	chr5	111338741	111338745	111338744	+	RAMPAGE_only	6	6	12	0.477256	2.845351	chr5	111338402	111339049	LINE|L1|L1P4	-	chr5	111357960	111473324	CAMK4|ENST00000502916.5	+	111357960,111374849,111376859,111394709,111446685,111449128,111473310	111358124,111374912,111376942,111394782,111446776,111449203,111473324	0.750000
SK_MEL_5	chr19	47227103	47227194	47227103	-	High_confidence	18	18	95	3.778280	5.178479	chr19	47227045	47227213	SINE|MIR|MIR1_Amn	-	chr19	47221644	47227189	BBC3|ENST00000598636.1	-	47221644,47226563	47221918,47227189	1.000000
SK_MEL_5	chr9	128684476	128684493	128684476	-	High_confidence	6	6	30	1.193141	3.898069	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128682229	128684463	STRG.64605.1	-	128682229	128684463	0.766667
SK_MEL_5	chr11	74071060	74071073	74071072	-	High_confidence	3	5	9	0.357942	2.503258	chr11	74070756	74071175	LINE|L2|L2c	+	chr11	74049518	74070869	C2CD3|ENST00000542484.1	-	74049518,74054606,74057405,74070505	74049542,74054671,74057544,74070869	0.888889
SK_MEL_5	chr5	114433510	114433511	114433510	+	High_confidence	17	17	17	0.676113	3.616875	chr5	114432499	114433929	LTR|ERV1|LTR12C	+	chr5	114433529	114496500	KCNN2|NR_103458.1	+	114433529,114463048,114473053,114486697,114487049,114493402,114495894	114433929,114463190,114473164,114486803,114487177,114493472,114496500	1.000000
SK_MEL_5	chr11	90491677	90491747	90491746	+	RAMPAGE_only	61	65	326	12.965466	6.651238	chr11	90491537	90491872	LTR|ERVL-MaLR|THE1B	+	chr11	90594282	90915052	STRG.73643.3	+	90594282,90597611,90602804,90801765,90844879,90852615,90914869	90594451,90597752,90602908,90801862,90844949,90852707,90915052	0.509202
SK_MEL_5	chr7	46696914	46696918	46696914	-	High_confidence	8	9	14	0.556799	3.180833	chr7	46695111	46697207	LINE|L1|L1MC2	+	chr7	46687878	46697122	LOC730338|NR_134575.1	-	46687878,46692810,46697002	46689546,46692969,46697122	0.857143
SK_MEL_5	chr9	15298512	15298518	15298517	-	RAMPAGE_only	5	6	10	0.397714	2.921928	chr9	15298349	15298712	LTR|ERVL-MaLR|THE1B	-	chr9	15163621	15307360	TTC39B|ENST00000512701.6	-	15163621,15175018,15177696,15182306,15185279,15186943,15187970,15189573,15189724,15190553,15191189,15192589,15199860,15203822,15210087,15211265,15214138,15225916,15267913,15307083	15172109,15175135,15177814,15182415,15185406,15187035,15188132,15189633,15189792,15190662,15191255,15192695,15199925,15203890,15210164,15211397,15214249,15226012,15267948,15307360	1.000000
SK_MEL_5	chr7	30562991	30563080	30562991	+	High_confidence	11	11	96	3.818051	5.548627	chr7	30563019	30563431	LINE|CR1|L3	+	chr7	30563005	30582379	STRG.49090.1	+	30563005,30568661,30577722	30563498,30568701,30582379	0.645833
SK_MEL_5	chr4	107155492	107155523	107155522	-	High_confidence	41	41	96	3.818051	5.759154	chr4	107155517	107155577	LINE|L2|L2a	+	chr4	106921985	107155674	STRG.31376.1	-	106921985,106924544,106925798,107003866,107127941,107155439	106924204,106924700,106925949,107004042,107128009,107155674	0.718750
SK_MEL_5	chr2	151704888	151704889	151704888	-	RAMPAGE_only	11	11	11	0.437485	2.845351	chr2	151698868	151704889	LINE|L1|L1PA2	-	chr2	151689197	151706931	NEB|ENST00000489048.1	-	151689197,151691863,151692058,151692260,151694322,151694521,151695577,151696636,151697147,151697349,151697543,151706880	151690825,151691968,151692166,151692362,151694436,151694629,151695682,151696735,151697252,151697457,151697648,151706931	0.909091
SK_MEL_5	chrX	88984701	88984723	88984722	+	High_confidence	17	20	31	1.232912	3.493415	chrX	88984584	88985972	LTR|ERV1|MER4-int	+	chrX	88984713	88990405	STRG.117788.2	+	88984713,88988895,88989814	88984762,88989066,88990405	0.870968
SK_MEL_5	chr6	5622627	5622681	5622627	+	RAMPAGE_only	10	11	31	1.232912	3.840224	chr6	5622419	5622836	LTR|ERVL-MaLR|MLT1A1	+	chr6	5261525	5771580	FARS2|ENST00000274680.8	+	5261525,5368549,5404541,5431040,5545179,5613168,5771290	5261660,5369182,5404701,5431172,5545340,5613320,5771580	0.806452
SK_MEL_5	chr3	112302389	112302417	112302414	+	High_confidence	18	18	42	1.670397	4.484184	chr3	112301857	112302478	LTR|ERV1|LTR76	+	chr3	112302442	112307699	STRG.24419.1	+	112302442,112306913	112302714,112307699	0.904762
SK_MEL_5	chr12	14915863	14915878	14915868	-	High_confidence	2	3	9	0.357942	2.750000	chr12	14915830	14916182	LINE|L1|L1PA14	+	chr12	14914094	14915567	STRG.75891.1	-	14914094,14915488	14914782,14915567	0.666667
SK_MEL_5	chr5	81407938	81407939	81407938	-	High_confidence	154	164	188	7.477017	6.571596	chr5	81407775	81408135	LTR|ERVL-MaLR|THE1D	-	chr5	81329996	81408129	STRG.36727.1	-	81329996,81330813,81332476,81335767,81342671,81343817,81344159,81344890,81345884,81347773,81359902,81363787,81371749,81385756,81407857	81330543,81330940,81332605,81335901,81342755,81343881,81344215,81345041,81346004,81347930,81360038,81363889,81371810,81385826,81408129	0.643617
SK_MEL_5	chr6	13323874	13323985	13323962	-	RAMPAGE_only	18	23	99	3.937365	5.151871	chr6	13323838	13324041	SINE|MIR|MIRb	+	chr6	13266541	13326912	TBC1D7|ENST00000606214.5	-	13266541,13305061,13306397,13307599,13316570,13320907,13325093,13326786	13267835,13305187,13306527,13307745,13316708,13321095,13325174,13326912	0.868687
SK_MEL_5	chr18	3857689	3857710	3857692	-	RAMPAGE_only	3	4	12	0.477256	3.277613	chr18	3857472	3857863	LINE|L2|L2c	+	chr18	3496031	3845359	DLGAP1|ENST00000400147.6	-	3496031,3502492,3508569,3534193,3567489,3581874,3729134,3742334,3814058,3845231	3499394,3502645,3508661,3534615,3567581,3582248,3729375,3742512,3814273,3845359	0.500000
SK_MEL_5	chr11	72111496	72111497	72111496	-	High_confidence	6	9	9	0.357942	3.000000	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.888889
SK_MEL_5	chr2	84563065	84563066	84563065	+	High_confidence	207	224	257	10.221241	6.115919	chr2	84562873	84563235	LTR|ERVL-MaLR|THE1B	+	chr2	84563069	84819578	STRG.14320.1	+	84563069,84573466,84577256,84579526,84583998,84588825,84593971,84595645,84604338,84605499,84606975,84611673,84616885,84619684,84621190,84621437,84624264,84624464,84624901,84634503,84637209,84640429,84641946,84653318,84654659,84658291,84659025,84669288,84670327,84672326,84677004,84681356,84685325,84686483,84688438,84694248,84697574,84699593,84701096,84703394,84704066,84705485,84706895,84707519,84709342,84710286,84713094,84715559,84718203,84722624,84727668,84733443,84745079,84762754,84781492,84784721,84785609,84787163,84796305,84797536,84805664,84808414,84812340,84813057,84813970,84815860,84819304	84563151,84573587,84577408,84579679,84584250,84588954,84594085,84595789,84604551,84605592,84607095,84611854,84616982,84619904,84621355,84621551,84624390,84624620,84625063,84634641,84637377,84640578,84642054,84653874,84654782,84658474,84659169,84669510,84670475,84672484,84677136,84681528,84685472,84686557,84688593,84694480,84697727,84699734,84701339,84703562,84704302,84705747,84707019,84707716,84709546,84710412,84713259,84715627,84718384,84722804,84727902,84733579,84745249,84762945,84781653,84784810,84785756,84787302,84796425,84797658,84805794,84808542,84812526,84813130,84814122,84816083,84819578	0.961089
SK_MEL_5	chr17	41871790	41871820	41871819	-	RAMPAGE_only	7	7	18	0.715885	2.698660	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.944444
SK_MEL_5	chr12	70468078	70468092	70468078	+	High_confidence	3	3	11	0.437485	3.095795	chr12	70467961	70468294	LTR|ERV1|MER61A	+	chr12	70468079	70538060	AC025569.1|ENST00000549460.5	+	70468079,70470212,70520198,70522523,70527674,70538049	70468327,70470308,70520267,70522630,70527738,70538060	0.545455
SK_MEL_5	chr15	85330237	85330278	85330277	-	RAMPAGE_only	6	7	27	1.073827	4.310443	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.666667
SK_MEL_5	chr9	5894678	5894709	5894691	+	RAMPAGE_only	81	88	201	7.994045	5.239302	chr9	5894274	5894902	LTR|ERVL|LTR50	-	chr9	5890921	5908945	MLANA|ENST00000381471.1	+	5890921,5892449,5897556,5906884,5908639	5891302,5892551,5897653,5906998,5908945	0.965174
SK_MEL_5	chr8	12796294	12796358	12796294	-	High_confidence	13	13	74	2.943081	5.168998	chr8	12796147	12797467	LTR|ERV1|LTR12C	+	chr8	12770262	12796720	STRG.55200.10	-	12770262,12788331,12796136	12778356,12788444,12796720	0.648649
SK_MEL_5	chr9	98065864	98065865	98065864	+	RAMPAGE_only	16	17	18	0.715885	3.044110	chr9	98065668	98065960	LTR|ERVL-MaLR|THE1A	+	chr9	98074642	98083075	NANS|ENST00000461452.1	+	98074642,98078192,98080815,98082845	98077017,98078347,98081082,98083075	1.000000
SK_MEL_5	chr7	156034536	156034564	156034563	-	High_confidence	73	122	591	23.504878	5.970598	chr7	156034372	156034739	LTR|ERVL-MaLR|MSTA	-	chr7	156030141	156034606	STRG.54688.1	-	156030141,156034453	156030932,156034606	0.934010
SK_MEL_5	chr5	12574616	12574671	12574639	-	High_confidence	19	19	107	4.255536	5.426725	chr5	12573943	12575033	LTR|ERV1|LTR12C	-	chr5	12562339	12574597	STRG.34034.1	-	12562339,12571815,12574503	12567227,12571904,12574597	0.887850
SK_MEL_5	chr3	73808585	73808586	73808585	+	High_confidence	5	5	8	0.318171	2.521641	chr3	73808390	73808744	LTR|ERVL-MaLR|THE1A	+	chr3	73808600	73902866	LINC02005|ENST00000498832.1	+	73808600,73869775,73878805,73902530	73808668,73869961,73878997,73902866	0.875000
SK_MEL_5	chr17	72625206	72625210	72625206	+	RAMPAGE_only	5	5	12	0.477256	3.084963	chr17	72625011	72625398	LTR|ERVL-MaLR|THE1B	+	chr17	72632415	72635647	STRG.100994.1	+	72632415,72634561,72635210	72632575,72634703,72635647	0.750000
SK_MEL_5	chr2	37928719	37928734	37928733	+	High_confidence	7	7	13	0.517028	3.026987	chr2	37928485	37928833	LINE|L2|L2	+	chr2	37928758	38017744	RMDN2|ENST00000406384.5	+	37928758,37929261,37974039,37975211,37981282,37989540,37991219,37997415,38003990,38004135,38017185	37928936,37929729,37974214,37975314,37981343,37989616,37991297,37997514,38004044,38004216,38017744	1.000000
SK_MEL_5	chr3	191425525	191425528	191425527	+	High_confidence	47	68	98	3.897594	5.274396	chr3	191425335	191425687	LTR|ERVL-MaLR|THE1B	+	chr3	191425527	191591097	AC073365.1|ENST00000641055.1	+	191425527,191473550,191557261,191559677,191569599,191573313,191589902	191425604,191473688,191557384,191559750,191569824,191573474,191591097	0.693878
SK_MEL_5	chr18	3852436	3852465	3852464	-	RAMPAGE_only	24	25	64	2.545367	5.288910	chr18	3851672	3852587	LINE|L1|L1M7	+	chr18	3726847	3858100	STRG.102316.9	-	3726847,3729134,3742334,3814058,3857478	3727936,3729375,3742512,3814273,3858100	0.640625
SK_MEL_5	chr18	32041731	32041743	32041731	+	High_confidence	120	129	243	9.664442	5.823582	chr18	32041620	32041929	SINE|Alu|AluYa5	-	chr18	32041822	32068489	RNF125|ENST00000583384.5	+	32041822,32042178,32045641,32065901,32068297	32041983,32042273,32045732,32066009,32068489	0.913580
SK_MEL_5	chrX	98573809	98573850	98573809	+	High_confidence	5	5	46	1.829483	4.682823	chrX	98573437	98574092	LTR|ERV1|LTR49	+	chrX	98573858	98865564	AL157778.1|ENST00000626665.3	+	98573858,98578985,98644527,98731530,98785026,98864610	98573932,98579074,98644574,98731577,98785124,98865564	0.673913
SK_MEL_5	chr9	39810033	39810034	39810033	-	High_confidence	24	24	34	1.352226	4.006071	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.882353
SK_MEL_5	chr7	102822447	102822461	102822458	-	High_confidence	57	81	142	5.647534	5.606939	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102812506	102822446	STRG.52359.1	-	102812506,102822039,102822382	102813531,102822203,102822446	0.866197
SK_MEL_5	chr13	113187298	113187344	113187336	-	High_confidence	26	27	143	5.687306	5.299615	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.923077
SK_MEL_5	chr8	53859800	53859802	53859800	-	RAMPAGE_only	7	10	12	0.477256	3.251629	chr8	53859634	53859997	LTR|ERVL-MaLR|THE1B	-	chr8	53715556	53843558	ATP6V1H|ENST00000355221.7	-	53715556,53743576,53756554,53769617,53771988,53795646,53801798,53814661,53817416,53829443,53832983,53841577,53843033	53716024,53743690,53756656,53769743,53772167,53795839,53801896,53814766,53817530,53829533,53833086,53841725,53843558	1.000000
SK_MEL_5	chr14	61401818	61401861	61401818	+	High_confidence	15	16	75	2.982853	5.360904	chr14	61401421	61402514	DNA|hAT-Charlie|Charlie1a	+	chr14	61401828	61476331	STRG.86644.3	+	61401828,61443110,61445691,61449163,61450841,61453225,61457175,61457505,61476329	61401980,61443261,61445726,61449252,61450971,61453353,61457319,61457679,61476331	0.946667
SK_MEL_5	chr6	10434806	10434867	10434806	-	High_confidence	354	404	1291	51.344835	6.317261	chr6	10434600	10434992	LTR|ERVL-MaLR|MLT1B	-	chr6	10429795	10434817	LINC00518|ENST00000491317.1	-	10429795,10433027,10434247,10434512	10430313,10433253,10434426,10434817	0.946553
SK_MEL_5	chr14	100476541	100476543	100476541	+	High_confidence	5	7	9	0.357942	2.725481	chr14	100476591	100476791	SINE|MIR|MIRb	+	chr14	100476473	100530007	WDR25|ENST00000555865.5	+	100476473,100483993,100525869,100529067,100529819	100476581,100484124,100526040,100529208,100530007	1.000000
SK_MEL_5	chr2	55268695	55268715	55268714	-	High_confidence	4	4	10	0.397714	2.646439	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	1.000000
SK_MEL_5	chr13	77997896	77997897	77997896	-	RAMPAGE_only	9	9	14	0.556799	2.807355	chr13	77997705	77998024	LTR|ERVL-MaLR|MLT1I	+	chr13	77979765	77994773	LINC01069|NR_108076.1	-	77979765,77989371,77994614	77981984,77989608,77994773	1.000000
SK_MEL_5	chr13	46467792	46467872	46467871	-	High_confidence	29	34	224	8.908786	6.069326	chr13	46467669	46468268	LTR|ERV1|HERVE-int	+	chr13	46455134	46467872	LINC01198|ENST00000648986.1	-	46455134,46457839,46460944,46464674,46465842,46466608,46467672	46455511,46457913,46461170,46464819,46465987,46466709,46467872	0.977679
SK_MEL_5	chr16	84329424	84329426	84329424	-	High_confidence	9	15	15	0.596571	3.240224	chr16	84329406	84329534	SINE|MIR|MIR3	+	chr16	84324445	84329713	STRG.96090.1	-	84324445,84326881,84329321	84324460,84326955,84329713	0.600000
SK_MEL_5	chr14	81170402	81170423	81170402	-	High_confidence	11	12	60	2.386282	4.643769	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81106390	81170406	STRG.87553.1	-	81106390,81107032,81165192,81170108	81106507,81107180,81165381,81170406	0.950000
SK_MEL_5	chr16	14649848	14650119	14650050	+	RAMPAGE_only	13	13	209	8.312216	4.127075	chr16	14650040	14650334	SINE|Alu|AluSz	+	chr16	14632931	14650589	BFAR|ENST00000562442.5	+	14632931,14644273,14648387,14649803	14633018,14644609,14648592,14650589	0.923445
SK_MEL_5	chr7	95627665	95627692	95627691	-	RAMPAGE_only	7	7	25	0.994284	4.053509	chr7	95627441	95627752	SINE|Alu|AluSx	+	chr7	95597096	95676898	STRG.51800.5	-	95597096,95601696,95676574	95597236,95601839,95676898	0.520000
SK_MEL_5	chr15	69081245	69081257	69081253	+	High_confidence	3	4	10	0.397714	2.641604	chr15	69081240	69081323	LINE|L2|L2c	-	chr15	69080861	69095679	STRG.90976.2	+	69080861,69086699,69090914,69094700	69081376,69086741,69092242,69095679	0.800000
SK_MEL_5	chr5	81602410	81602421	81602420	-	RAMPAGE_only	10	10	19	0.755656	3.127987	chr5	81601657	81603037	LTR|ERVL-MaLR|MLT1G-int	-	chr5	81442650	81616473	SSBP2|ENST00000509743.6	-	81442650,81446867,81448789,81461054,81466973,81473699,81474495,81489249,81513627,81615472,81616348	81442723,81446922,81448825,81461103,81467041,81473770,81474562,81489309,81513717,81615557,81616473	0.578947
SK_MEL_5	chr6	10434363	10434378	10434363	-	High_confidence	2	2	7	0.278400	2.807355	chr6	10434122	10434400	LINE|L2|L2a	-	chr6	10429708	10434495	LINC00518|ENST00000472178.1	-	10429708,10434247	10430313,10434495	1.000000
SK_MEL_5	chr9	87442571	87442676	87442587	-	RAMPAGE_only	10	11	78	3.102167	3.468293	chr9	87442000	87443900	LTR|ERVL|ERVL-int	-	chr9	87436476	87436713	STRG.62577.1	-	87436476	87436713	0.935897
SK_MEL_5	chr12	127060613	127060614	127060613	+	High_confidence	10	14	14	0.556799	3.235926	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060454	127061193	STRG.80777.1	+	127060454	127061193	0.928571
SK_MEL_5	chr4	150944100	150944101	150944100	-	High_confidence	12	12	15	0.596571	3.093069	chr4	150943828	150944250	LTR|ERVL-MaLR|MLT1F	+	chr4	150265025	150944044	STRG.32397.4	-	150265025,150277852,150282449,150285932,150302624,150310228,150315560,150321190,150325808,150349991,150415437,150435588,150436723,150467672,150471623,150487731,150490917,150588047,150590712,150599006,150683550,150735257,150761782,150798080,150806270,150808319,150817123,150828179,150831816,150844099,150844657,150848817,150849421,150850723,150851884,150867670,150868181,150870524,150871344,150872662,150893051,150896393,150897738,150900048,150905837,150906296,150908333,150908659,150914194,150915607,150916400,150916616,150921197,150928515,150928833,150943867	150265812,150278004,150282646,150286034,150302792,150310384,150315623,150321368,150325898,150350159,150415590,150435708,150436864,150467785,150471739,150487834,150491035,150588184,150590859,150599131,150683717,150735366,150761847,150798142,150806404,150808398,150817257,150828621,150831976,150844207,150844779,150848998,150849575,150850902,150852943,150867863,150868305,150870606,150871453,150872755,150893149,150896456,150897818,150900217,150905990,150906405,150908467,150908857,150914341,150915727,150916527,150916738,150921293,150928616,150929065,150944044	0.933333
SK_MEL_5	chr10	98142471	98142554	98142533	-	High_confidence	24	42	206	8.192902	5.155788	chr10	98142376	98142649	SINE|Alu|AluSz6	+	chr10	98141410	98142525	STRG.68291.1	-	98141410,98142305	98141914,98142525	0.893204
SK_MEL_5	chr8	64762994	64763003	64762994	+	High_confidence	5	5	12	0.477256	2.855389	chr8	64762955	64763460	LTR|ERV1|LTR17	+	chr8	64763007	64789127	STRG.56833.1	+	64763007,64788941	64763493,64789127	0.666667
SK_MEL_5	chr15	98282027	98282041	98282040	+	High_confidence	12	14	20	0.795427	3.405822	chr15	98281848	98282204	LTR|ERVL-MaLR|THE1B	+	chr15	98282054	98284768	STRG.92333.1	+	98282054,98284057	98282120,98284768	0.850000
SK_MEL_5	chr6	13319103	13319141	13319137	-	RAMPAGE_only	7	7	22	0.874970	3.746439	chr6	13318892	13319177	LINE|L1|L1MC4a	+	chr6	13307713	13320981	TBC1D7|ENST00000607208.1	-	13307713,13316570,13318097,13320907	13307745,13316708,13318193,13320981	0.545455
SK_MEL_5	chrX	115211387	115211388	115211387	+	RAMPAGE_only	10	10	12	0.477256	3.251629	chrX	115211178	115211520	LTR|ERVL-MaLR|THE1B	+	chrX	115209442	115307564	STRG.118462.1	+	115209442,115301991,115303299,115306204	115209513,115302123,115303418,115307564	0.916667
SK_MEL_5	chr8	115576607	115576625	115576607	+	RAMPAGE_only	23	25	36	1.431769	3.568495	chr8	115576463	115576630	SINE|MIR|MIRc	-	chr8	115582626	115583125	STRG.58753.1	+	115582626	115583125	0.777778
SK_MEL_5	chr8	86413426	86413450	86413441	+	High_confidence	3	3	12	0.477256	3.084963	chr8	86413309	86413645	LINE|L2|L2c	-	chr8	86413469	86452581	STRG.57618.3	+	86413469,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558	86413971,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452581	1.000000
SK_MEL_5	chr11	62126296	62126313	62126296	+	High_confidence	8	9	22	0.874970	3.584184	chr11	62126200	62126495	SINE|Alu|AluSx3	-	chr11	62125440	62155874	STRG.71945.3	+	62125440,62128150,62128769,62129781,62137831,62138712,62138887,62140233,62140703,62140912,62144981,62145168,62145628,62146657,62148475,62148738,62150056,62151761	62126514,62128301,62128883,62130590,62137883,62138770,62139005,62140285,62140821,62141044,62145091,62145289,62145763,62146902,62148554,62148846,62150207,62155874	0.818182
SK_MEL_5	chr12	119868919	119868921	119868919	-	RAMPAGE_only	5	9	9	0.357942	2.947703	chr12	119868893	119868972	SINE|MIR|MIRb	-	chr12	119685790	119877288	CIT|ENST00000261833.11	-	119685790,119690150,119697658,119697975,119700744,119701623,119701849,119704362,119708178,119710250,119710539,119712177,119712590,119713202,119713467,119714196,119718244,119718698,119720477,119721308,119728501,119730494,119734163,119735159,119742410,119752049,119757370,119758590,119760938,119767086,119772769,119775785,119776357,119776671,119782517,119783907,119784959,119803205,119822819,119825164,119832770,119834085,119850173,119857522,119869059,119876072,119877248	119688255,119690454,119697838,119698054,119700825,119701752,119701958,119704455,119708318,119710386,119710620,119712347,119712695,119713294,119713648,119714334,119718409,119718861,119720585,119721449,119728606,119730630,119734357,119735357,119742464,119752247,119757545,119758700,119761055,119767182,119772910,119775839,119776408,119776842,119782637,119784051,119785065,119803389,119822973,119825368,119832864,119834228,119850275,119857698,119869201,119876181,119877288	1.000000
SK_MEL_5	chr2	176235811	176235867	176235811	+	High_confidence	7	7	21	0.835199	3.916127	chr2	176235610	176235914	DNA|hAT-Tip100|MER45B	-	chr2	176235029	176243036	STRG.17586.2	+	176235029,176235821,176242557	176235272,176235926,176243036	0.619048
SK_MEL_5	chr7	130794571	130794596	130794577	+	RAMPAGE_only	11	11	66	2.624910	4.197571	chr7	130794500	130794857	LTR|ERV1|MER51B	-	chr7	130807112	130832742	STRG.53509.1	+	130807112,130832581	130807173,130832742	0.545455
SK_MEL_5	chr4	52049428	52049445	52049428	-	RAMPAGE_only	2	2	9	0.357942	2.750000	chr4	52049288	52049616	LTR|ERVL-MaLR|THE1B	-	chr4	52020705	52038482	SGCB|ENST00000381431.9	-	52020705,52027967,52028729,52029677,52033430,52038226	52024160,52028099,52028921,52029863,52033640,52038482	0.888889
SK_MEL_5	chr7	47795357	47795358	47795357	+	High_confidence	52	52	54	2.147654	5.248329	chr7	47795165	47795519	LTR|ERVL-MaLR|THE1A	+	chr7	47795423	47819847	C7orf69|ENST00000418326.3	+	47795423,47813425,47818025,47819506	47795443,47813569,47818195,47819847	0.555556
SK_MEL_5	chr18	12608049	12608074	12608073	-	RAMPAGE_only	3	3	9	0.357942	2.750000	chr18	12607874	12608174	SINE|Alu|AluY	+	chr18	12449505	12636340	SPIRE1|ENST00000440472.6	-	12449505,12452254,12453067,12454345,12463350,12464867,12479698,12493071,12496015,12506476,12512453,12535475,12546673,12588375,12635061,12636323	12449896,12452443,12453138,12454483,12463493,12464958,12479871,12493201,12496102,12506641,12512531,12535601,12546904,12588419,12635096,12636340	0.777778
SK_MEL_5	chr3	101949161	101949162	101949161	+	RAMPAGE_only	38	39	45	1.789712	4.569414	chr3	101948967	101949326	LTR|ERVL-MaLR|THE1B	+	chr3	101940788	101960822	STRG.23986.2	+	101940788,101960361	101941025,101960822	0.866667
SK_MEL_5	chr4	142631954	142631957	142631954	-	High_confidence	113	116	166	6.602047	5.267309	chr4	142631849	142632229	LTR|ERVL|LTR47B2	-	chr4	142628465	142631968	STRG.32250.1	-	142628465,142630789,142631908	142630162,142630922,142631968	0.843373
SK_MEL_5	chr1	151166632	151166661	151166660	+	High_confidence	9	9	38	1.511312	4.355139	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	0.973684
SK_MEL_5	chr4	149943055	149943067	149943061	+	RAMPAGE_only	13	23	41	1.630626	4.025071	chr4	149942429	149943268	LTR|ERVL|MER21C	+	chr4	149956207	149958572	AC105343.1|ENST00000505586.1	+	149956207,149958280	149956273,149958572	0.780488
SK_MEL_5	chr2	111985678	111985684	111985678	-	High_confidence	27	27	50	1.988568	4.845176	chr2	111985515	111985854	LTR|ERVL-MaLR|THE1B	-	chr2	111984872	111985570	STRG.15470.1	-	111984872	111985570	0.700000
SK_MEL_5	chr4	142566073	142566090	142566089	+	High_confidence	5	5	18	0.715885	3.392147	chr4	142566070	142566604	LINE|L2|L2c	-	chr4	142566018	142660950	AC139720.1|ENST00000509497.1	+	142566018,142583451,142660782	142566190,142583623,142660950	0.500000
SK_MEL_5	chr14	67820876	67820929	67820890	+	High_confidence	28	29	68	2.704453	4.962817	chr14	67820812	67820909	SINE|MIR|MIR	-	chr14	67820775	68541257	STRG.86966.6	+	67820775,67823541,67825463,67835079,67865002,67885868,67887020,68291883,68411423,68468171,68540199	67821874,67823627,67825577,67835196,67865139,67885988,67887204,68291980,68411527,68468250,68541257	0.955882
SK_MEL_5	chr1	77605181	77605201	77605181	-	RAMPAGE_only	25	27	102	4.056679	5.409623	chr1	77604959	77607065	LINE|L1|L1MA9	+	chr1	77562415	77631921	AC118549.1|ENST00000481346.5	-	77562415,77566080,77568331,77576067,77578773,77579526,77580997,77581775,77581978,77584516,77631849	77565784,77566181,77568466,77576220,77578869,77579628,77581069,77581888,77582126,77584655,77631921	0.882353
SK_MEL_5	chr2	28904506	28904540	28904539	+	High_confidence	2	2	7	0.278400	2.521641	chr2	28904449	28904682	LINE|L1|L1ME4c	-	chr2	28905005	28926485	WDR43|ENST00000296126.6	+	28905005,28906459,28912589,28914068,28917892,28922918,28924981,28926467	28905051,28906581,28912710,28914208,28917995,28922983,28925153,28926485	1.000000
SK_MEL_5	chr19	48118414	48118415	48118414	+	High_confidence	30	30	33	1.312455	4.233640	chr19	48118234	48118534	LTR|ERVL-MaLR|THE1B	+	chr19	48118437	48127384	AC011466.3|ENST00000596839.1	+	48118437,48121152,48122208,48127030	48118500,48121259,48122365,48127384	0.515152
SK_MEL_5	chr8	86413603	86413637	86413634	+	High_confidence	54	72	333	13.243865	6.907832	chr8	86413309	86413645	LINE|L2|L2c	-	chr8	86413469	86452581	STRG.57618.3	+	86413469,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558	86413971,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452581	0.819820
SK_MEL_5	chr19	49014389	49014429	49014389	+	RAMPAGE_only	41	45	170	6.761132	5.243479	chr19	49014137	49014433	LINE|L2|L2b	-	chr19	48999318	49015894	RUVBL2|ENST00000594338.1	+	48999318,49003278,49004276,49007017,49007301,49009775,49009972,49010998,49011191,49014483,49015020,49015571,49015816	48999373,49003334,49004418,49007147,49007368,49009882,49010611,49011093,49011310,49014603,49015150,49015686,49015894	0.747059
SK_MEL_5	chr14	83639297	83639299	83639297	+	High_confidence	31	41	47	1.869254	4.658900	chr14	83639298	83645330	LINE|L1|L1PA3	+	chr14	83638995	83658615	STRG.87654.1	+	83638995,83639304,83646543,83658422	83639086,83639395,83646654,83658615	0.680851
SK_MEL_5	chrX	135893381	135893422	135893381	-	High_confidence	42	47	134	5.329363	5.208855	chrX	135893277	135893550	LTR|ERVL|LTR41	-	chrX	135880751	135893428	CT45A10|NM_001291529.1	-	135880751,135882535,135883007,135885175,135893344	135881315,135882629,135883256,135885350,135893428	0.970149
SK_MEL_5	chr18	7946867	7946888	7946878	+	High_confidence	31	31	96	3.818051	4.918104	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.843750
SK_MEL_5	chr7	92244943	92244950	92244949	-	High_confidence	3	3	7	0.278400	2.521641	chr7	92244870	92245026	DNA|hAT-Charlie|MER20B	+	chr7	92200357	92245795	KRIT1|ENST00000412043.6	-	92200357,92201306,92213194,92213891,92214610,92221901,92222821,92225719,92226525,92234448,92234807,92235402,92236412,92237666,92240992,92242033,92244001,92244901,92245426	92200804,92201423,92213401,92213979,92214777,92222053,92222978,92225827,92226682,92234592,92234923,92235646,92236542,92237759,92241152,92242137,92244149,92245171,92245795	0.714286
SK_MEL_5	chr12	121582273	121582285	121582278	-	RAMPAGE_only	14	15	53	2.107882	4.678912	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121429095	121581015	KDM2B|NM_032590.4	-	121429095,121439856,121440815,121441069,121442156,121442991,121443679,121444011,121444449,121445274,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549459,121574546,121575780,121578801,121580785	121430469,121440075,121440977,121441233,121442836,121443030,121443793,121444272,121444536,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548983,121549638,121574593,121575859,121578946,121581015	0.943396
SK_MEL_5	chr5	122383565	122383571	122383565	-	High_confidence	5	5	11	0.437485	2.663533	chr5	122377544	122383563	LINE|L1|L1PA2	-	chr5	122369761	122383568	AC119150.1|ENST00000507143.1	-	122369761,122371356,122371705,122383469	122370015,122371494,122371777,122383568	0.636364
SK_MEL_5	chr10	86981187	86981211	86981187	+	High_confidence	2	2	10	0.397714	2.921928	chr10	86981077	86981384	LTR|ERVL-MaLR|THE1C	+	chr10	86981188	87009905	STRG.67795.1	+	86981188,86983139,86983853,86992246,86993361,86994823,86999448,87000318,87001635,87004324,87007654,87008354	86981322,86983248,86983941,86992469,86993552,86994903,86999591,87000434,87001736,87004360,87007706,87009905	0.700000
SK_MEL_5	chr3	78666105	78666106	78666105	+	High_confidence	30	32	34	1.352226	4.003928	chr3	78665910	78666285	LTR|ERVL-MaLR|THE1C	+	chr3	78666320	78666686	STRG.23674.1	+	78666320	78666686	0.705882
SK_MEL_5	chr4	4342084	4342132	4342111	+	High_confidence	4	4	34	1.352226	4.793345	chr4	4341935	4342312	LTR|ERVL-MaLR|MSTC	+	chr4	4342093	4343367	STRG.28252.1	+	4342093,4342752	4342233,4343367	0.529412
SK_MEL_5	chr4	142560709	142560823	142560709	-	High_confidence	46	46	147	5.846391	5.893996	chr4	142560371	142560916	LTR|ERVL|MLT2B3	-	chr4	142086178	142560669	INPP4B|ENST00000510812.5	-	142086178,142108092,142112541,142122127,142123291,142124587,142145839,142160357,142173631,142193086,142208424,142208895,142237863,142260491,142270662,142305457,142314711,142402937,142405205,142429172,142431168,142462662,142560456	142086256,142108190,142112682,142122245,142123415,142124760,142145996,142160561,142173809,142193195,142208529,142209026,142238011,142260564,142270774,142305537,142314762,142403054,142405324,142429217,142431385,142462726,142560669	0.877551
SK_MEL_5	chr7	104752744	104752785	104752744	-	RAMPAGE_only	3	3	18	0.715885	3.947703	chr7	104748901	104752819	LTR|ERVK|HERVK-int	-	chr7	104738596	104757748	LHFPL3-AS1|ENST00000433514.5	-	104738596,104744049,104752714,104757608	104738984,104744180,104752803,104757748	0.888889
SK_MEL_5	chr1	70947349	70947396	70947392	+	High_confidence	117	131	324	12.885923	6.575543	chr1	70947197	70947555	LTR|ERVL-MaLR|THE1A	+	chr1	70947378	70965970	STRG.3877.2	+	70947378,70961054,70964845	70947475,70961258,70965970	0.601852
SK_MEL_5	chr8	28090231	28090232	28090231	+	High_confidence	36	36	46	1.829483	4.559116	chr8	28089941	28090482	LTR|ERVL|LTR66	+	chr8	28090230	28191156	ELP3|ENST00000521015.5	+	28090230,28097218,28099827,28106712,28107912,28110369,28113018,28129501,28132277,28137697,28155941,28158567,28160228,28161996,28189648	28090332,28097318,28099966,28106783,28107976,28110438,28113173,28129663,28132404,28137891,28156032,28158633,28160456,28162078,28191156	0.978261
SK_MEL_5	chr14	27612576	27612577	27612576	+	High_confidence	37	38	48	1.909026	4.944236	chr14	27612284	27612881	LTR|ERVL|LTR66	+	chr14	27612587	27639636	LINC00645|ENST00000557359.5	+	27612587,27613420,27634243,27636419	27612677,27613496,27634344,27639636	0.833333
SK_MEL_5	chr9	129488856	129489126	129488904	+	High_confidence	305	311	2457	97.718249	6.398675	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503425	STRG.64676.4	+	129488911,129493418,129502396,129503322	129489299,129493595,129503139,129503425	0.839642
SK_MEL_5	chr14	63974422	63974429	63974426	+	RAMPAGE_only	7	7	18	0.715885	3.454822	chr14	63974232	63974537	LTR|ERVL-MaLR|MSTB1	-	chr14	63909097	64225564	SYNE2|ENST00000554584.5	+	63909097,63940613,63941694,63941884,63942050,63949824,63954718,63961524,63963898,63967708,63976562,63977904,63978851,63980653,63980985,63982629,63983736,63986455,63990410,63990941,63993834,63995043,63996946,63997300,63998218,63998913,64000561,64001933,64002719,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024256,64024911,64025129,64026578,64027483,64029894,64031015,64034493,64047999,64049610,64051556,64055943,64062750,64065431,64070644,64073967,64075944,64078465,64080455,64081442,64087670,64089573,64090865,64093348,64097948,64098746,64101985,64107490,64113340,64119426,64120926,64122011,64125128,64126326,64126597,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64167232,64167494,64168876,64170227,64173898,64174943,64177357,64188549,64188859,64190070,64190601,64190915,64202186,64202800,64208757,64209427,64209950,64211960,64212810,64214193,64216247,64219207,64220436,64221575,64223188,64224460,64224982,64225318	63909227,63940675,63941790,63941962,63942143,63950006,63954915,63961625,63964000,63967846,63976727,63978017,63979014,63980732,63981173,63982794,63983886,63986617,63990569,63991115,63993969,63995202,63997158,63997391,63998328,63999040,64000719,64002081,64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64022863,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64034592,64048155,64049876,64053657,64056266,64062895,64065650,64070910,64074136,64076100,64078606,64080638,64081580,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64125210,64126479,64126807,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64167387,64167639,64168971,64170321,64174009,64175138,64177483,64188708,64189009,64190237,64190614,64191120,64202265,64202963,64208945,64209578,64210124,64212098,64212954,64214470,64216424,64219410,64220637,64221704,64223380,64224547,64225045,64225564	0.944444
SK_MEL_5	chr9	69307100	69307135	69307134	-	High_confidence	17	18	61	2.426053	4.721129	chr9	69306938	69307567	LTR|ERV1|MER41B	-	chr9	69296684	69307135	BANCR|ENST00000624238.2	-	69296684,69304935,69306147,69306853	69296867,69305077,69306290,69307135	0.819672
SK_MEL_5	chr3	139344537	139344548	139344547	+	High_confidence	299	300	615	24.459391	5.693715	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.957724
SK_MEL_5	chr10	98153941	98153960	98153959	+	High_confidence	6	6	17	0.676113	3.375000	chr10	98153910	98154027	LTR|ERVL-MaLR|MLT1J	-	chr10	98153468	98244892	STRG.68293.2	+	98153468,98156092,98162882,98163292,98208100,98231511,98234445,98235424,98236023,98244090	98154033,98156147,98162975,98163397,98209899,98231687,98234516,98235520,98236164,98244892	0.705882
SK_MEL_5	chr22	47631678	47631788	47631777	+	High_confidence	29	59	284	11.295068	6.737591	chr22	47631336	47631805	LTR|ERVL|MLT2B1	-	chr22	47631779	47705599	STRG.115433.1	+	47631779,47635179,47686199,47686574,47686802,47687140,47704588	47631886,47635353,47686312,47686695,47686938,47687206,47705599	0.651408
SK_MEL_5	chr7	151468584	151468585	151468584	-	RAMPAGE_only	16	16	19	0.755656	3.503258	chr7	151468185	151468817	LINE|L2|L2a	+	chr7	151466873	151519183	RHEB|ENST00000472642.5	-	151466873,151470570,151471393,151471548,151477332,151484736,151490942,151519031	151467211,151470652,151471441,151471605,151477415,151484804,151491014,151519183	0.526316
SK_MEL_5	chr5	31538095	31538096	31538095	+	High_confidence	11	11	12	0.477256	2.913977	chr5	31537737	31538167	LTR|ERVL-MaLR|MLT1J	-	chr5	31538172	31545714	C5orf22|ENST00000510530.1	+	31538172,31540948,31541280,31545645	31538689,31541011,31541402,31545714	0.916667
SK_MEL_5	chr7	119713753	119713756	119713755	-	High_confidence	1900	2315	2809	111.717770	6.755246	chr7	119713581	119713935	LTR|ERVL-MaLR|THE1B	-	chr7	119484581	119713746	STRG.53084.4	-	119484581,119499507,119499973,119713665	119486040,119499625,119500109,119713746	0.847989
SK_MEL_5	chr6	147131985	147131986	147131985	-	RAMPAGE_only	6	6	8	0.318171	2.500000	chr6	147131896	147132081	DNA|DNA|UCON78	+	chr6	146861805	147119463	STXBP5-AS1|ENST00000458125.5	-	146861805,146864469,146972044,147001440,147074804,147119416	146862019,146864602,146972070,147001543,147074847,147119463	0.625000
SK_MEL_5	chr4	34335350	34335351	34335350	-	High_confidence	24	24	27	1.073827	3.854286	chr4	34334935	34336205	LTR|ERV1|LTR12C	-	chr4	34332002	34335259	STRG.29647.1	-	34332002,34334928	34332044,34335259	0.777778
SK_MEL_5	chrX	115211353	115211357	115211356	+	RAMPAGE_only	30	34	46	1.829483	4.404741	chrX	115211178	115211520	LTR|ERVL-MaLR|THE1B	+	chrX	115209442	115307564	STRG.118462.1	+	115209442,115301991,115303299,115306204	115209513,115302123,115303418,115307564	0.891304
SK_MEL_5	chr10	86981263	86981264	86981263	+	High_confidence	39	45	49	1.948797	4.665132	chr10	86981077	86981384	LTR|ERVL-MaLR|THE1C	+	chr10	86981188	87009905	STRG.67795.1	+	86981188,86983139,86983853,86992246,86993361,86994823,86999448,87000318,87001635,87004324,87007654,87008354	86981322,86983248,86983941,86992469,86993552,86994903,86999591,87000434,87001736,87004360,87007706,87009905	0.775510
SK_MEL_5	chr8	93003253	93003277	93003269	-	High_confidence	6	7	25	0.994284	4.084963	chr8	93003138	93003309	LTR|ERVL-MaLR|MSTA	-	chr8	92885713	93003306	STRG.57961.8	-	92885713,92891988,92916928,92954405,93003203	92886735,92892074,92917010,92954564,93003306	0.640000
SK_MEL_5	chr5	42759708	42759718	42759712	+	RAMPAGE_only	8	10	20	0.795427	3.684184	chr5	42759476	42759998	DNA|TcMar-Tigger|MER44B	+	chr5	42756817	42802437	CCDC152|NM_001134848.1	+	42756817,42759119,42762442,42769596,42779457,42783473,42796828,42799374,42799658	42756885,42759208,42762548,42769665,42779522,42783576,42796956,42799458,42802437	1.000000
SK_MEL_5	chr12	9869593	9869620	9869619	-	High_confidence	8	8	24	0.954513	4.136842	chr12	9869538	9869722	DNA|hAT-Charlie|MER105	-	chr12	9853132	9869823	STRG.75557.2	-	9853132,9854380,9857473,9862498,9869539	9853408,9854484,9857637,9862573,9869823	0.708333
SK_MEL_5	chr17	2537969	2538002	2538001	-	High_confidence	7	7	13	0.517028	2.792481	chr17	2537776	2538066	SINE|Alu|AluSg	-	chr17	2535233	2538080	STRG.96731.2	-	2535233,2537048,2537572	2536356,2537166,2538080	0.692308
SK_MEL_5	chr6	132134141	132134206	132134141	+	High_confidence	9	9	68	2.704453	4.375029	chr6	132134140	132134291	DNA|hAT-Tip100|MamTip2	+	chr6	132133977	132169374	LINC01013|NR_038981.1	+	132133977,132154655,132169000	132134483,132154777,132169374	0.573529
SK_MEL_5	chr10	98361251	98361273	98361251	+	RAMPAGE_only	20	21	54	2.147654	4.993417	chr10	98361087	98361433	LTR|ERVL-MaLR|MLT1F1	+	chr10	98368192	98368470	STRG.68274.1	+	98368192	98368470	0.537037
SK_MEL_5	chr2	193171146	193171163	193171146	-	RAMPAGE_only	3	5	14	0.556799	3.378783	chr2	193170704	193171720	LINE|L1|L1HS	+	chr2	193159823	193167380	STRG.18201.1	-	193159823,193167259	193160431,193167380	0.571429
SK_MEL_5	chr12	31118999	31119017	31119016	-	High_confidence	26	27	56	2.227197	4.611039	chr12	31118893	31119042	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.767857
SK_MEL_5	chr7	95407872	95407892	95407872	-	RAMPAGE_only	9	10	17	0.676113	3.292770	chr7	95407677	95408031	LINE|L2|L2c	-	chr7	95404866	95434991	PON2|ENST00000455123.5	-	95404866,95406118,95406986,95409953,95411652,95412311,95416241,95424514,95434877	95405488,95406247,95407068,95410101,95411779,95412477,95416297,95424585,95434991	1.000000
SK_MEL_5	chr16	11640240	11640247	11640246	-	RAMPAGE_only	4	4	12	0.477256	2.550341	chr16	11640197	11640395	SINE|MIR|MIR3	-	chr16	11549612	11629210	LITAF|ENST00000576036.5	-	11549612,11553532,11556510,11629122	11549745,11553689,11556735,11629210	0.583333
SK_MEL_5	chr10	95711731	95711756	95711755	+	High_confidence	14	17	63	2.505596	4.754493	chr10	95711747	95711902	LTR|ERV1|MER39B	+	chr10	95711778	95869695	ENTPD1|ENST00000453258.6	+	95711778,95823236,95839690,95842343,95844475,95845356,95847445,95860468,95864723,95866176	95711993,95823364,95839808,95842494,95844635,95845596,95847706,95860582,95864861,95869695	0.936508
SK_MEL_5	chrX	147937519	147937543	147937528	+	RAMPAGE_only	3	3	10	0.397714	2.921928	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.700000
SK_MEL_5	chr9	105184759	105184793	105184759	+	High_confidence	7	7	30	1.193141	4.031402	chr9	105183756	105186825	LINE|L1|L1PA14	-	chr9	105184755	105194331	STRG.63435.1	+	105184755,105194110	105184898,105194331	0.566667
SK_MEL_5	chr2	6918666	6918680	6918679	-	High_confidence	29	29	65	2.585139	5.097432	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.753846
SK_MEL_5	chr8	54162080	54162081	54162080	+	High_confidence	80	82	93	3.698737	5.354552	chr8	54161885	54162241	LTR|ERVL-MaLR|THE1A	+	chr8	54162093	54208171	STRG.56578.1	+	54162093,54191582,54207852	54162165,54191739,54208171	0.817204
SK_MEL_5	chrX	87728664	87728691	87728690	-	High_confidence	76	81	319	12.687066	5.295598	chrX	87728475	87728831	LTR|ERV1|MER61A	-	chrX	87723927	87728686	STRG.117776.1	-	87723927,87728443	87724212,87728686	0.968652
SK_MEL_5	chr9	39809852	39809859	39809852	-	High_confidence	11	11	29	1.153370	3.702472	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.551724
SK_MEL_5	chr9	114626885	114626908	114626885	+	RAMPAGE_only	4	4	18	0.715885	3.350209	chr9	114626723	114626887	LINE|CR1|L3	-	chr9	114611425	114646423	C9orf91|NM_153045.3	+	114611425,114617117,114624349,114626898,114628100,114633767,114636989,114638543,114643133	114611564,114617301,114624459,114627006,114628250,114633878,114637070,114638726,114646423	1.000000
SK_MEL_5	chr8	93003300	93003324	93003317	-	High_confidence	6	6	16	0.636342	3.640224	chr8	93003138	93003309	LTR|ERVL-MaLR|MSTA	-	chr8	92885713	93003306	STRG.57961.8	-	92885713,92891988,92916928,92954405,93003203	92886735,92892074,92917010,92954564,93003306	0.562500
SK_MEL_5	chr16	11587517	11587531	11587529	-	High_confidence	6	8	15	0.596571	2.739572	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587563	LITAF|ENST00000571688.5	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587563	1.000000
SK_MEL_5	chr6	141421627	141421667	141421657	+	High_confidence	21	21	64	2.545367	5.327820	chr6	141421530	141422111	LINE|L1|L1ME3A	-	chr6	141421670	141450172	STRG.46237.1	+	141421670,141446008	141421933,141450172	0.765625
SK_MEL_5	chrX	70592315	70592316	70592315	-	RAMPAGE_only	7	7	7	0.278400	2.521641	chrX	70592084	70592558	LINE|L1|L1MB8	+	chrX	70528940	70724292	TEX11|ENST00000374320.6	-	70528940,70529834,70552125,70553305,70554650,70591750,70605400,70606958,70609090,70610502,70623949,70624838,70629610,70651449,70670376,70678803,70682673,70722617,70724075	70529187,70529999,70552246,70553414,70554800,70591823,70605517,70607029,70609177,70610543,70624006,70624924,70629735,70651552,70670514,70678889,70682825,70722696,70724292	0.857143
SK_MEL_5	chr4	39390617	39390788	39390650	-	High_confidence	35	41	266	10.579184	6.958254	chr4	39389788	39390686	LINE|L2|L2	+	chr4	39320459	39390818	STRG.29762.3	-	39320459,39321286,39323339,39326562,39327523,39342344,39345400,39351347,39374834,39384647,39390592	39320669,39321374,39323417,39326640,39327756,39342467,39345476,39351476,39374965,39384850,39390818	0.736842
SK_MEL_5	chr12	10363694	10363707	10363694	+	High_confidence	4	4	13	0.517028	3.084963	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363718	10379875	STRG.75610.1	+	10363718,10374034,10379701	10364033,10374136,10379875	0.769231
SK_MEL_5	chr12	55479507	55479533	55479532	-	High_confidence	2	2	6	0.238628	2.584963	chr12	55478463	55480124	Retroposon|SVA|SVA_D	-	chr12	55434733	55479472	AC122685.1|ENST00000555146.5	-	55434733,55476548,55479388	55435131,55476601,55479472	1.000000
SK_MEL_5	chr8	28447460	28447463	28447460	+	RAMPAGE_only	3	3	9	0.357942	2.947703	chr8	28447393	28447671	LINE|L1|L1MC5	+	chr8	28448953	28455902	AC025871.1|ENST00000518819.1	+	28448953,28455623	28449106,28455902	0.888889
SK_MEL_5	chr5	104079892	104079919	104079918	+	High_confidence	31	37	71	2.823767	5.115346	chr5	104074362	104080381	LINE|L1|L1PA2	-	chr5	104079910	104105403	LINC02163|ENST00000514769.1	+	104079910,104080907,104081879,104104173,104105359	104080124,104081041,104081947,104104287,104105403	0.619718
SK_MEL_5	chr8	79996522	79996556	79996533	-	RAMPAGE_only	10	10	32	1.272684	3.827820	chr8	79996376	79996682	LTR|ERVL-MaLR|MLT1A0	-	chr8	79918716	80030271	MRPS28|ENST00000276585.8	-	79918716,80002998,80030035	79919148,80003180,80030271	0.937500
SK_MEL_5	chr2	81481734	81481747	81481734	+	High_confidence	129	204	375	14.914263	7.163586	chr2	81481147	81482372	LTR|ERV1|LTR2752	-	chr2	81481740	81570850	STRG.14175.2	+	81481740,81548617,81570321	81482104,81548747,81570850	0.733333
SK_MEL_5	chrX	40781937	40781941	40781940	+	High_confidence	8	8	16	0.636342	3.106891	chrX	40781779	40782110	LTR|ERVL-MaLR|THE1B	+	chrX	40782000	40819950	STRG.116669.1	+	40782000,40819224	40782027,40819950	0.812500
SK_MEL_5	chrX	87728523	87728573	87728523	-	High_confidence	4	4	34	1.352226	4.055631	chrX	87727773	87728475	LTR|ERV1|MER61-int	-	chrX	87723927	87728686	STRG.117776.1	-	87723927,87728443	87724212,87728686	0.970588
SK_MEL_5	chr6	10434953	10434963	10434962	-	High_confidence	6	6	11	0.437485	3.121928	chr6	10434600	10434992	LTR|ERVL-MaLR|MLT1B	-	chr6	10429547	10434874	LINC00518|ENST00000487130.1	-	10429547,10434641	10430313,10434874	0.636364
SK_MEL_5	chr7	154928480	154928504	154928503	+	High_confidence	25	26	40	1.590855	4.534184	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.825000
SK_MEL_5	chr22	39874066	39874067	39874066	-	High_confidence	3702	3889	4831	192.135475	6.829100	chr22	39873891	39874245	LTR|ERVL-MaLR|THE1B	-	chr22	39742913	39874072	STRG.114763.1	-	39742913,39765222,39820992,39835839,39861764,39873974	39744283,39765609,39821113,39835958,39862007,39874072	0.759263
SK_MEL_5	chr1	49257817	49257831	49257817	-	RAMPAGE_only	5	5	9	0.357942	2.947703	chr1	49257178	49257818	LINE|L1|L1PA3	-	chr1	48817506	50023900	AGBL4|ENST00000371836.1	-	48817506,48867190,49045583,49245769,49697312,49851395,50023762	48818222,48867230,49045800,49245864,49697437,49851518,50023900	0.555556
SK_MEL_5	chr10	101730047	101730119	101730060	-	High_confidence	6	6	41	1.630626	4.266599	chr10	101729855	101730163	SINE|Alu|AluY	+	chr10	101702071	101729894	STRG.68451.1	-	101702071,101729716	101702295,101729894	0.804878
SK_MEL_5	chr6	2987966	2987975	2987966	+	High_confidence	9	11	15	0.596571	3.456565	chr6	2987907	2988156	LINE|L2|L2c	-	chr6	2987966	2991173	LINC01011|ENST00000445000.2	+	2987966,2988427	2988031,2991173	0.533333
SK_MEL_5	chr4	122913316	122913320	122913317	-	High_confidence	84	124	169	6.721361	5.658205	chr4	122913129	122913485	LTR|ERVL-MaLR|MLT1A0	-	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	0.887574
SK_MEL_5	chr9	72363478	72363503	72363498	-	High_confidence	5	8	18	0.715885	3.013071	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.944444
SK_MEL_5	chr22	35231054	35231059	35231054	-	High_confidence	45	79	136	5.408906	6.172274	chr22	35230880	35231246	LTR|ERVL-MaLR|THE1D	-	chr22	35188618	35231046	STRG.114036.3	-	35188618,35194856,35215327,35230997	35192547,35195019,35215434,35231046	0.507353
SK_MEL_5	chr4	158173024	158173025	158173024	-	High_confidence	6	6	6	0.238628	2.584963	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158130799	158173023	FAM198B|ENST00000589306.1	-	158130799,158155610,158172867	158131012,158155825,158173023	0.500000
SK_MEL_5	chr1	74266261	74266264	74266261	+	RAMPAGE_only	14	15	29	1.153370	3.438627	chr1	74266004	74266559	LTR|ERVL-MaLR|MLT1G	-	chr1	74235400	74544424	TNNI3K|ENST00000326637.7	+	74235400,74236101,74249458,74250671,74271597,74331449,74336010,74342841,74343074,74353265,74353979,74367255,74367907,74369021,74369206,74369390,74370287,74436079,74436473,74439489,74463440,74489188,74492096,74540233,74543905	74235491,74236210,74249544,74250769,74271708,74331548,74336149,74342986,74343179,74353360,74354129,74367342,74367964,74369114,74369264,74369585,74370392,74436132,74436526,74439622,74463550,74489248,74492266,74540313,74544424	0.965517
SK_MEL_5	chrX	27918204	27918226	27918217	-	High_confidence	76	77	261	10.380327	5.719492	chrX	27918146	27918747	LINE|L2|L2a	+	chrX	27908772	27918284	STRG.116445.5	-	27908772	27918284	0.973180
SK_MEL_5	chr20	6322042	6322043	6322042	+	RAMPAGE_only	18	18	27	1.073827	3.856196	chr20	6321937	6322242	SINE|Alu|AluY	-	chr20	6426731	6528459	CASC20|NR_109953.1	+	6426731,6446722,6473538,6527193	6426810,6446823,6473655,6528459	0.629630
SK_MEL_5	chr3	53197318	53197326	53197318	+	RAMPAGE_only	5	6	9	0.357942	2.500000	chr3	53197093	53197442	LTR|ERVL-MaLR|THE1C	+	chr3	53200965	53229215	STRG.22712.3	+	53200965,53227951	53201015,53229215	0.888889
SK_MEL_5	chrX	115022921	115022938	115022921	-	RAMPAGE_only	3	5	11	0.437485	2.721928	chrX	115022863	115023093	SINE|MIR|MIRb	-	chrX	115014525	115019977	IL13RA2|ENST00000468224.1	-	115014525,115015669,115017175,115017552,115019849	115014574,115015821,115017302,115017695,115019977	0.545455
SK_MEL_5	chr18	14236643	14236647	14236646	+	RAMPAGE_only	24	24	47	1.869254	2.776341	chr18	14236320	14236738	LTR|ERV1|MER61C	-	chr18	14249432	14252832	STRG.102659.1	+	14249432,14250287,14252293	14249485,14250407,14252832	0.978723
SK_MEL_5	chr22	11897364	11897397	11897394	+	High_confidence	6	6	35	1.391998	4.171861	chr22	11897053	11897465	LTR|ERV1|MER61C	-	chr22	11897354	11913701	STRG.112882.1	+	11897354,11903786,11905336,11910165,11913039,11913623	11897467,11904000,11905557,11912886,11913192,11913701	0.542857
SK_MEL_5	chr3	15341379	15341381	15341379	-	High_confidence	56	73	102	4.056679	6.056307	chr3	15341159	15341407	LINE|L2|L2a	+	chr3	15255649	15341368	SH3BP5|ENST00000408919.7	-	15255649,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341368	0.911765
SK_MEL_5	chr7	104803126	104803127	104803126	-	High_confidence	13	13	18	0.715885	3.337175	chr7	104802722	104803154	LINE|L2|L2	+	chr7	104738597	104804084	STRG.52537.2	-	104738597,104744049,104752714,104759702,104779203,104785219,104785730,104802838,104803955	104738955,104744180,104752791,104778828,104782629,104785378,104800069,104802963,104804084	0.944444
SK_MEL_5	chr12	110126329	110126333	110126329	+	RAMPAGE_only	5	5	10	0.397714	3.121928	chr12	110126296	110126646	LINE|L2|L2c	-	chr12	110127472	110218786	IFT81|ENST00000550156.5	+	110127472,110128045,110128949,110132546,110134947,110135326,110136775,110143381,110146952,110162918,110180421,110190919,110192616,110203863,110205442,110205594,110209170,110216536,110216707,110218043	110127524,110128149,110129130,110132636,110135013,110135437,110136860,110143545,110147048,110163065,110180571,110191048,110192706,110203950,110205514,110205680,110209216,110216605,110216833,110218786	1.000000
SK_MEL_5	chr5	128135561	128135599	128135598	+	RAMPAGE_only	5	11	28	1.113598	2.825786	chr5	128135517	128135661	LINE|L2|L2a	-	chr5	128083847	128188442	SLC12A2|ENST00000343225.4	+	128083847,128112813,128114211,128114585,128131066,128134164,128135699,128138596,128138823,128141829,128147621,128148753,128149996,128151240,128152705,128158052,128161659,128167760,128171666,128174540,128178566,128180882,128182854,128184365,128184788,128186495	128084710,128112933,128114287,128114681,128131206,128134275,128135808,128138724,128138908,128141981,128147729,128148877,128150098,128151396,128152805,128158164,128161800,128167867,128171746,128174666,128178689,128180994,128182941,128184501,128184856,128188442	1.000000
SK_MEL_5	chr5	22638953	22638967	22638966	-	High_confidence	97	98	232	9.226957	5.689877	chr5	22638791	22639080	SINE|Alu|AluY	+	chr5	21751736	22638955	STRG.34323.2	-	21751736,21755590,21760557,21764977,21783357,21802166,21816944,21842160,21854670,21975090,22078445,22212497,22405256,22505269,22638697	21752236,21755842,21760675,21765099,21783494,21802420,21817132,21842328,21854790,21975385,22078862,22212643,22405351,22505364,22638955	0.913793
SK_MEL_5	chr6	149755895	149755896	149755895	+	RAMPAGE_only	14	14	14	0.556799	3.521641	chr6	149755692	149755987	LINE|L2|L2a	-	chr6	149749727	149810628	PCMT1|ENST00000649032.1	+	149749727,149771161,149773137,149789953,149793548,149796414,149802199,149810615	149749956,149771266,149773169,149790058,149793669,149796500,149802369,149810628	0.714286
SK_MEL_5	chr18	31353995	31353996	31353995	-	High_confidence	23	25	25	0.994284	3.501398	chr18	31347968	31353996	LINE|L1|L1PA2	-	chr18	31343367	31353936	DSG1-AS1|NR_110789.1	-	31343367,31347719,31353899	31343698,31347820,31353936	0.880000
SK_MEL_5	chr3	177628295	177628296	177628295	-	High_confidence	563	571	651	25.891160	6.304854	chr3	177628122	177628491	LTR|ERVL-MaLR|THE1B	-	chr3	177621381	177628287	AC026355.2|ENST00000456755.1	-	177621381,177622626,177628205	177621945,177622703,177628287	0.546851
SK_MEL_5	chr7	107580245	107580267	107580264	+	High_confidence	2641	2657	12871	511.897266	6.854447	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.954316
SK_MEL_5	chr18	74566975	74567002	74567000	-	High_confidence	9	17	23	0.914741	4.142915	chr18	74566850	74567194	LTR|ERVL-MaLR|THE1A	-	chr18	74566232	74566696	STRG.103982.1	-	74566232	74566696	0.608696
SK_MEL_5	chr11	17866878	17866881	17866880	-	High_confidence	225	427	456	18.135743	6.404232	chr11	17866710	17867056	LTR|ERVL-MaLR|THE1B	-	chr11	17788055	17866864	STRG.70470.9	-	17788055,17846584,17866790	17788413,17846761,17866864	0.868421
SK_MEL_5	chr12	10363662	10363664	10363662	+	High_confidence	4	7	9	0.357942	2.725481	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363718	10379875	STRG.75610.1	+	10363718,10374034,10379701	10364033,10374136,10379875	0.888889
SK_MEL_5	chr2	73640870	73640974	73640870	+	High_confidence	17	17	166	6.602047	5.186686	chr2	73640769	73640932	LTR|ERVL-MaLR|MLT1J2	+	chr2	73640863	73685482	STRG.13695.12	+	73640863,73644880,73671029,73672308,73672807,73673812,73674841,73684960	73641325,73645154,73671150,73672495,73673050,73674021,73674905,73685482	0.939759
SK_MEL_5	chr18	12606763	12606768	12606763	-	RAMPAGE_only	4	5	12	0.477256	3.584963	chr18	12606533	12606830	SINE|Alu|AluSz6	-	chr18	12449505	12636340	SPIRE1|ENST00000440472.6	-	12449505,12452254,12453067,12454345,12463350,12464867,12479698,12493071,12496015,12506476,12512453,12535475,12546673,12588375,12635061,12636323	12449896,12452443,12453138,12454483,12463493,12464958,12479871,12493201,12496102,12506641,12512531,12535601,12546904,12588419,12635096,12636340	1.000000
SK_MEL_5	chr1	100268288	100268294	100268293	+	RAMPAGE_only	4	4	10	0.397714	2.646439	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	1.000000
SK_MEL_5	chr7	104804080	104804110	104804098	-	High_confidence	4966	5547	13384	532.299978	7.985140	chr7	104804006	104804386	LTR|ERVL-MaLR|MLT1K	-	chr7	104798997	104804092	LHFPL3-AS1|NR_034142.1	-	104798997,104802838,104803955	104800069,104802963,104804092	0.830170
SK_MEL_5	chr1	247533826	247533840	247533826	-	High_confidence	3	3	11	0.437485	2.913977	chr1	247533249	247533882	LTR|ERV1|MER39B	+	chr1	247530131	247533839	OR2C3|NM_198074.4	-	247530131,247533506	247532540,247533839	1.000000
SK_MEL_5	chr14	32075864	32075880	32075879	+	High_confidence	73	78	195	7.755417	6.049306	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32075839	32154827	STRG.85313.1	+	32075839,32076457,32090501,32117139,32146262,32149901,32152422,32154620	32076217,32076657,32094386,32117287,32146340,32150033,32152528,32154827	0.974359
SK_MEL_5	chr13	60410005	60410048	60410035	+	High_confidence	4	5	27	1.073827	4.085055	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60410064	60485899	STRG.82991.8	+	60410064,60439687,60444686,60460379,60467237,60483774,60485798	60410164,60439772,60444748,60460540,60467379,60483846,60485899	0.962963
SK_MEL_5	chr19	39485700	39485803	39485802	+	High_confidence	23	25	97	3.857823	5.200709	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	1.000000
SK_MEL_5	chr17	2538091	2538112	2538094	-	High_confidence	9	10	33	1.312455	3.983196	chr17	2537776	2538066	SINE|Alu|AluSg	-	chr17	2535233	2538080	STRG.96731.2	-	2535233,2537048,2537572	2536356,2537166,2538080	0.818182
SK_MEL_5	chr3	53238988	53239017	53239011	-	RAMPAGE_only	3	5	23	0.914741	3.477175	chr3	53238928	53239286	LTR|ERVL-MaLR|THE1B	+	chr3	53225651	53235607	TKT|ENST00000460343.5	-	53225651,53228275,53229006,53229279,53230456,53231356	53228149,53228359,53229137,53229436,53230621,53235607	0.826087
SK_MEL_5	chr22	18149863	18149869	18149868	+	High_confidence	8	8	20	0.795427	3.221097	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18162058	STRG.113109.2	+	18149898,18157557,18160171,18161789	18150222,18157859,18160268,18162058	0.950000
SK_MEL_5	chr3	9973628	9973659	9973628	-	RAMPAGE_only	2	3	12	0.477256	3.277613	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.916667
SK_MEL_5	chrX	71300126	71300465	71300459	+	RAMPAGE_only	27	37	454	18.056201	5.252325	chrX	71300434	71300519	SINE|Alu|AluSx	-	chrX	71291994	71301168	NONO|ENST00000490044.5	+	71291994,71294218,71296564,71296850,71297376,71297835,71298468,71298706,71299941	71293041,71294528,71296660,71297047,71297461,71297938,71298508,71298816,71301168	0.993392
SK_MEL_5	chr6	43013392	43013393	43013392	-	High_confidence	66	66	77	3.062395	5.578221	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
SK_MEL_5	chr14	50756913	50756927	50756926	-	RAMPAGE_only	3	4	10	0.397714	2.521928	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
SK_MEL_5	chr8	89609260	89609351	89609350	+	High_confidence	4	4	23	0.914741	4.142915	chr8	89608971	89609376	LINE|CR1|Plat_L3	-	chr8	89608809	89611281	STRG.57859.1	+	89608809	89611281	0.652174
SK_MEL_5	chr7	4591104	4591115	4591114	-	RAMPAGE_only	21	24	58	2.306739	4.888346	chr7	4590929	4591897	LTR|ERVK|LTR5_Hs	-	chr7	4580307	4600355	STRG.47568.2	-	4580307,4590821,4599324	4585464,4593968,4600355	0.810345
SK_MEL_5	chrX	69576336	69576337	69576336	-	RAMPAGE_only	19	23	28	1.113598	3.532573	chrX	69576194	69576532	LTR|ERVL-MaLR|THE1A	-	chrX	69569668	69570357	AL158069.1|ENST00000454131.1	-	69569668,69570250	69570016,69570357	0.714286
SK_MEL_5	chr1	150729865	150729868	150729865	-	High_confidence	5	7	11	0.437485	3.121928	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150698553	150729794	STRG.6217.1	-	150698553,150700111,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150714084,150714614,150717137,150719472,150729141,150729573	150698734,150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150714121,150714678,150717282,150719538,150729225,150729794	0.818182
SK_MEL_5	chr11	89179242	89179247	89179242	+	RAMPAGE_only	9	9	17	0.676113	3.969816	chr11	89179204	89179304	DNA|hAT-Charlie|MER5A	+	chr11	89177871	89295759	TYR|NM_000372.4	+	89177871,89191201,89227822,89284772,89295142	89178772,89191418,89227970,89284954,89295759	0.882353
SK_MEL_5	chr7	134432378	134432436	134432435	-	High_confidence	22	25	149	5.925934	4.861895	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.953020
SK_MEL_5	chr8	12554469	12554470	12554469	-	RAMPAGE_only	11	12	13	0.517028	2.855389	chr8	12554294	12554652	LTR|ERVL-MaLR|THE1B	-	chr8	12537078	12665588	AC068587.4|ENST00000635775.1	-	12537078,12580827,12581932,12601157,12601786,12607290,12607922,12659129,12665277	12539065,12581044,12582063,12601398,12601854,12607526,12607990,12659829,12665588	0.615385
SK_MEL_5	chrX	97161430	97161444	97161430	+	RAMPAGE_only	6	7	15	0.596571	3.323231	chrX	97161402	97161614	SINE|Alu|AluSx3	-	chrX	96760744	97469835	STRG.118057.5	+	96760744,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348115,97383908,97429649,97469693	96761985,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247839,97348280,97384044,97429745,97469835	1.000000
SK_MEL_5	chr1	90862936	90862937	90862936	-	High_confidence	23	25	26	1.034056	3.843856	chr1	90862780	90863131	LTR|ERVL-MaLR|THE1A	-	chr1	90859612	90862919	STRG.4338.1	-	90859612,90860931,90862856	90860087,90860985,90862919	0.807692
SK_MEL_5	chr9	134872635	134872636	134872635	-	High_confidence	25	25	32	1.272684	4.625000	chr9	134872476	134872826	LTR|ERVL-MaLR|THE1B	-	chr9	134819414	134872618	LOC101448202|NR_103451.2	-	134819414,134872548	134820209,134872618	0.625000
SK_MEL_5	chr11	14681417	14681466	14681465	+	RAMPAGE_only	6	6	22	0.874970	4.186704	chr11	14681274	14681591	LTR|ERVL-MaLR|THE1B	+	chr11	14644259	14844075	STRG.70398.2	+	14644259,14771936,14786436,14789105,14803943,14818182,14819135,14830697,14831639,14832721,14843826	14645053,14771987,14786685,14789242,14804050,14818393,14819209,14830846,14831777,14832833,14844075	0.954545
SK_MEL_5	chr5	85663224	85663238	85663226	+	High_confidence	4	7	15	0.596571	3.378783	chr5	85657593	85663641	LINE|L1|L1PA2	-	chr5	85663231	85664684	AC010595.1|ENST00000507387.1	+	85663231	85664684	0.733333
SK_MEL_5	chr20	8600706	8600749	8600725	+	High_confidence	3	3	13	0.517028	3.584963	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600725	8788523	PLCB1|ENST00000626966.2	+	8600725,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8600781,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788523	0.692308
SK_MEL_5	chr7	16484683	16484684	16484683	-	RAMPAGE_only	13	15	19	0.755656	3.239098	chr7	16484528	16485041	LTR|ERVL|LTR16E2	+	chr7	16461480	16465849	SOSTDC1|NM_015464.2	-	16461480,16465463	16462963,16465849	0.736842
SK_MEL_5	chr7	22726151	22726167	22726166	+	High_confidence	6	6	10	0.397714	2.646439	chr7	22725923	22726198	LTR|Gypsy?|LTR88b	+	chr7	22725883	22732002	IL6|ENST00000404625.5	+	22725883,22727178,22727443,22728692,22729513,22731405	22726258,22727281,22727634,22728806,22729660,22732002	0.800000
SK_MEL_5	chr1	89113014	89113048	89113047	-	High_confidence	34	38	133	5.289592	5.671724	chr1	89112996	89113213	SINE|MIR|MIRb	+	chr1	89108116	89113050	GBP2|ENST00000493802.5	-	89108116,89109676,89110163,89112471,89112941	89108291,89109870,89110266,89112684,89113050	0.932331
SK_MEL_5	chr4	102431228	102431248	102431247	-	High_confidence	6	7	17	0.676113	3.327820	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.941176
SK_MEL_5	chr22	38168076	38168093	38168092	-	High_confidence	7	7	19	0.755656	3.197160	chr22	38167963	38168270	LINE|L2|L2b	+	chr22	38143236	38168090	PLA2G6|ENST00000452972.1	-	38143236,38144895,38145437,38167917	38143288,38144978,38145653,38168090	0.947368
SK_MEL_5	chr8	106060475	106060539	106060475	-	High_confidence	59	61	308	12.249581	7.077307	chr8	106060473	106060807	LTR|ERVL|LTR18A	+	chr8	105784804	106060477	ZFPM2-AS1|ENST00000524045.6	-	105784804,105787066,105787448,105798324,106059080,106060380	105785217,105787221,105787596,105798442,106059136,106060477	0.652597
SK_MEL_5	chr15	69080890	69080892	69080890	+	High_confidence	8	11	17	0.676113	3.500000	chr15	69080204	69081232	LINE|L1|L1M7	-	chr15	69080878	69099987	AC027088.2|ENST00000559870.2	+	69080878,69081229,69090914,69097583,69099595	69080965,69081376,69091114,69097673,69099987	0.529412
SK_MEL_5	chr13	108191619	108191641	108191633	-	RAMPAGE_only	7	7	19	0.755656	3.038562	chr13	108191379	108191718	LTR|ERVL-MaLR|THE1B	-	chr13	108166187	108166391	STRG.84379.1	-	108166187	108166391	0.894737
SK_MEL_5	chrX	115018037	115018042	115018037	-	High_confidence	5	5	11	0.437485	3.095795	chrX	115017783	115018061	SINE|Alu|AluSx1	+	chrX	115003974	115017644	IL13RA2|NM_000640.2	-	115003974,115005196,115007931,115009520,115010643,115013768,115014420,115015669,115017175,115017552	115004106,115005315,115008076,115009666,115010828,115013889,115014574,115015821,115017302,115017644	0.636364
SK_MEL_5	chr19	48270080	48270081	48270080	+	High_confidence	251	265	269	10.698498	5.814159	chr19	48269716	48270187	LTR|ERV1|LTR7C	+	chr19	48270098	48287608	ZNF114|NM_153608.2	+	48270098,48271244,48271726,48279730,48282370,48285760	48270219,48271449,48271828,48279808,48282497,48287608	0.929368
SK_MEL_5	chr6	73774476	73774491	73774490	+	RAMPAGE_only	3	3	11	0.437485	2.845351	chr6	73774396	73774938	LINE|L1|L1MEh	-	chr6	73782916	73810172	STRG.43808.4	+	73782916,73783706,73785363,73787233,73788467,73792625,73803219,73806843,73808082,73809983	73783242,73783824,73785477,73787452,73788612,73792802,73803301,73807072,73808248,73810172	0.818182
SK_MEL_5	chr1	187641233	187641253	187641241	+	High_confidence	11	17	34	1.352226	4.413910	chr1	187641123	187641443	LTR|ERV1|MER61A	+	chr1	187641284	187686622	ERVMER61-1|ENST00000643044.1	+	187641284,187641617,187685703	187641481,187641814,187686622	0.558824
SK_MEL_5	chr1	51297967	51297976	51297975	-	High_confidence	9	15	27	1.073827	3.912114	chr1	51297625	51298239	LINE|L2|L2a	+	chr1	51287257	51297961	TTC39A|NM_001297666.1	-	51287257,51288838,51290004,51290513,51294390,51296078,51297790	51288280,51288955,51290119,51290625,51294511,51296170,51297961	1.000000
SK_MEL_5	chr20	61755072	61755124	61755072	-	High_confidence	229	244	465	18.493686	6.159792	chr20	61754915	61755267	LTR|ERVL-MaLR|THE1A	-	chr20	61749259	61755056	STRG.111264.2	-	61749259,61754991	61754200,61755056	0.924731
SK_MEL_5	chr5	50799818	50799878	50799877	+	High_confidence	114	186	907	36.072630	5.880678	chr5	50799661	50800035	LTR|ERVL-MaLR|MLT1A0	+	chr5	50799803	50842293	STRG.35440.6	+	50799803,50815431,50821212,50822334,50824907,50826754,50827943,50828311,50829891,50832780,50833978,50834930,50841965	50799958,50815524,50821338,50822400,50824975,50826803,50828056,50828384,50829961,50832854,50834048,50835015,50842293	0.982359
SK_MEL_5	chr2	12315322	12315356	12315322	-	High_confidence	16	16	64	2.545367	4.413474	chr2	12315321	12315699	LTR|ERVL-MaLR|MLT1A1	+	chr2	12314606	12315364	STRG.10966.1	-	12314606	12315364	0.968750
SK_MEL_5	chr4	23020564	23020570	23020569	+	High_confidence	4	4	9	0.357942	2.750000	chr4	23020504	23020847	LTR|ERVL-MaLR|THE1B	+	chr4	23020599	23098893	STRG.29226.10	+	23020599,23083696,23095238	23020764,23083788,23098893	0.777778
SK_MEL_5	chr2	29106532	29106551	29106534	+	High_confidence	9	12	18	0.715885	2.816308	chr2	29106513	29106661	SINE|MIR|MIRb	-	chr2	29106541	29107131	STRG.11750.1	+	29106541	29107131	0.833333
SK_MEL_5	chr7	47793472	47793508	47793472	+	High_confidence	84	85	134	5.329363	5.211972	chr7	47793280	47793633	LTR|ERVL-MaLR|THE1A	+	chr7	47793466	47819830	STRG.49745.2	+	47793466,47795005,47818025,47819506	47793557,47795443,47818195,47819830	0.567164
SK_MEL_5	chr11	88102376	88102436	88102426	-	RAMPAGE_only	12	15	76	3.022624	5.248475	chr11	88102224	88102650	LTR|ERVL-MaLR|MLT1J	-	chr11	87818686	88036011	STRG.73468.1	-	87818686,87954832,88035479	87819409,87954906,88036011	0.618421
SK_MEL_5	chr4	128428000	128428020	128428000	+	High_confidence	7	9	22	0.874970	3.447402	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.909091
SK_MEL_5	chr6	5622564	5622596	5622586	+	RAMPAGE_only	17	20	83	3.301023	3.992105	chr6	5622419	5622836	LTR|ERVL-MaLR|MLT1A1	+	chr6	5261525	5771580	FARS2|ENST00000274680.8	+	5261525,5368549,5404541,5431040,5545179,5613168,5771290	5261660,5369182,5404701,5431172,5545340,5613320,5771580	0.722892
SK_MEL_5	chr15	62281925	62281958	62281957	-	High_confidence	130	136	192	7.636102	6.803751	chr15	62281800	62282152	LTR|ERVL-MaLR|THE1A	-	chr15	62271329	62281947	STRG.90536.10	-	62271329,62276052,62281876	62272768,62276130,62281947	0.567708
SK_MEL_5	chr12	122064308	122064376	122064308	+	RAMPAGE_only	152	152	763	30.345553	6.893956	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.833552
SK_MEL_5	chr12	84983526	84983589	84983526	+	High_confidence	5	6	31	1.232912	4.211261	chr12	84983522	84983645	LTR|Gypsy?|LTR85a	+	chr12	84983546	84992763	STRG.78853.2	+	84983546,84988941,84992569	84983709,84989037,84992763	0.774194
SK_MEL_5	chr20	37298760	37298761	37298760	+	RAMPAGE_only	12	12	12	0.477256	3.022055	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
SK_MEL_5	chr12	19447715	19447716	19447715	+	High_confidence	8	8	9	0.357942	3.000000	chr12	19447707	19447850	SINE|MIR|MIRc	+	chr12	19447650	19520224	STRG.76021.2	+	19447650,19462509,19473247,19493799,19500096,19512397,19514670,19518086,19518674	19448024,19462717,19473355,19493986,19500221,19512465,19514784,19518113,19520224	0.777778
SK_MEL_5	chr4_GL000008v2_random	170343	170379	170347	-	RAMPAGE_only	40	44	215	8.550844	5.874743	chr4_GL000008v2_random	170280	170685	LTR|ERV1|MER61C	+	chr4_GL000008v2_random	161986	178171	ANKRD20A12P|NR_046228.1	-	161986,163784,164602,175824,177526	162439,163998,164884,175974,178171	0.897674
SK_MEL_5	chr1	6208681	6208682	6208681	-	High_confidence	55	57	57	2.266968	3.570669	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.947368
SK_MEL_5	chr8	27779763	27779772	27779769	+	High_confidence	2	2	6	0.238628	2.584963	chr8	27779678	27779963	SINE|Alu|AluSc	-	chr8	27780198	27799601	ESCO2|ENST00000518262.5	+	27780198,27783999,27787884,27788846,27791962,27799540	27780267,27784057,27788002,27788978,27792052,27799601	0.500000
SK_MEL_5	chr20	44696091	44696112	44696091	-	High_confidence	5	5	10	0.397714	2.721928	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.800000
SK_MEL_5	chr9	32997349	32997350	32997349	-	High_confidence	8	8	10	0.397714	2.721928	chr9	32997347	32997748	LINE|L2|L2c	-	chr9	32972762	32997360	APTX|ENST00000479656.5	-	32972762,32974457,32984630,32985970,32987543,32988078,32989758,32997242	32973652,32974561,32984857,32986030,32987842,32988124,32989895,32997360	1.000000
SK_MEL_5	chr12	9570650	9570670	9570650	+	High_confidence	48	48	120	4.772564	4.080942	chr12	9570334	9570702	LINE|L1|L1MDa	+	chr12	9570713	9576264	STRG.75601.4	+	9570713,9571460,9573002,9573313,9574846,9575642,9576117	9570892,9571573,9573093,9573534,9574949,9575717,9576264	1.000000
SK_MEL_5	chr19	58306141	58306177	58306141	+	High_confidence	2	4	13	0.517028	2.625815	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.769231
SK_MEL_5	chr6	125219777	125219781	125219777	+	High_confidence	935	970	1751	69.639664	6.527829	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219736	125263038	STRG.45523.5	+	125219736,125220077,125229117,125248281,125253716,125262833	125219806,125220193,125229266,125248383,125253755,125263038	0.745860
SK_MEL_5	chr5	120404867	120404916	120404867	-	High_confidence	195	227	440	17.499402	6.916812	chr5	120404677	120405066	LTR|ERVL-MaLR|MSTD	-	chr5	120345906	120404837	STRG.38239.1	-	120345906,120351751,120381187,120404754	120346340,120351867,120381250,120404837	0.722727
SK_MEL_5	chr19	45450757	45450771	45450770	-	High_confidence	7	7	22	0.874970	3.879664	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.909091
SK_MEL_5	chr2	55267571	55267612	55267611	-	High_confidence	5	5	18	0.715885	3.337175	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.833333
SK_MEL_5	chr1	153967482	153967512	153967486	+	High_confidence	25	37	97	3.857823	5.304382	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153974131	STRG.6469.4	+	153967533,153968521,153968929,153969333,153972743,153972971,153973194,153973379,153973619,153973871	153967884,153968699,153969176,153969455,153972836,153973078,153973263,153973464,153973716,153974131	0.876289
SK_MEL_5	chr15	74738466	74738467	74738466	-	RAMPAGE_only	10	10	10	0.397714	2.646439	chr15	74738305	74738647	LTR|ERVL-MaLR|THE1B	-	chr15	74719541	74725610	CYP1A1|ENST00000379727.7	-	74719541,74720966,74721198,74721413,74721590,74722272,74725440	74720774,74721053,74721322,74721503,74721717,74723126,74725610	1.000000
SK_MEL_5	chr17	601980	602107	602076	-	RAMPAGE_only	90	103	1021	40.606566	6.190899	chr17	602038	602389	LINE|L2|L2c	+	chr17	518952	676407	VPS53|ENST00000576149.5	-	518952,519825,521600,532841,537027,551871,553379,560425,562502,586269,599944,601794,623532,627173,628087,631549,676179	519298,519930,521738,532911,537176,551950,553462,560573,562745,586364,600094,601896,623674,627316,628231,631628,676407	0.952987
SK_MEL_5	chr16	81314782	81314819	81314782	-	High_confidence	3	3	24	0.954513	4.251629	chr16	81314567	81314733	SINE|MIR|MIR	-	chr16	81313819	81314574	STRG.95899.1	-	81313819	81314574	0.958333
SK_MEL_5	chr3	171776107	171776161	171776117	+	RAMPAGE_only	108	115	267	10.618955	6.234837	chr3	171776041	171776135	SINE|MIR|MIRc	-	chr3	171800222	171800473	STRG.26756.2	+	171800222	171800473	0.531835
SK_MEL_5	chr5	30693889	30693919	30693913	-	RAMPAGE_only	5	5	20	0.795427	3.684184	chr5	30693867	30694173	SINE|Alu|AluYf1	+	chr5	30628179	30628430	STRG.34486.1	-	30628179	30628430	0.650000
SK_MEL_5	chr2	188314904	188314914	188314913	+	RAMPAGE_only	3	3	7	0.278400	2.521641	chr2	188314687	188315446	DNA|TcMar-Tigger|MER44C	+	chr2	188293817	188594281	GULP1|ENST00000409609.5	+	188293817,188383762,188477658,188483430,188522755,188529096,188541180,188569238,188570027,188584264,188587854,188593939	188294393,188383889,188477730,188483492,188522827,188529195,188541318,188569355,188570120,188584403,188587949,188594281	0.857143
SK_MEL_5	chr5	8762665	8762670	8762666	+	High_confidence	12	22	32	1.272684	4.750000	chr5	8762574	8762831	LTR|ERVL-MaLR|THE1D	+	chr5	8762685	8779789	STRG.33732.1	+	8762685,8775174,8778610	8762714,8775450,8779789	0.718750
SK_MEL_5	chr16	21611703	21611779	21611703	+	High_confidence	16	20	79	3.141938	5.041893	chr16	21611579	21611827	SINE|MIR|MIRb	-	chr16	21612099	21625115	METTL9|ENST00000562961.1	+	21612099,21612644,21617864,21624930	21612298,21612835,21618074,21625115	0.860759
SK_MEL_5	chr12	14911367	14911395	14911393	-	High_confidence	3	6	10	0.397714	3.169925	chr12	14911152	14911691	LTR|ERVL|MER74A	+	chr12	14881841	14910930	STRG.75884.1	-	14881841,14882971,14884212,14885730,14910436,14910757	14882280,14883047,14884245,14885850,14910575,14910930	0.800000
SK_MEL_5	chr4	39544055	39544056	39544055	-	High_confidence	746	755	877	34.879489	6.584496	chr4	39543948	39544368	LTR|ERVK|LTR3B	-	chr4	39539157	39544098	STRG.29779.1	-	39539157,39543823	39539775,39544098	0.979475
SK_MEL_5	chr2	29223866	29223918	29223866	-	High_confidence	8	10	27	1.073827	3.973661	chr2	29223782	29224196	LTR|ERVL|LTR16B2	-	chr2	29192773	29223900	ALK|ENST00000642122.1	-	29192773,29196769,29197541,29207170,29209785,29213983,29220705,29222343,29222516,29223341	29193922,29196860,29197676,29207272,29209878,29214081,29220835,29222408,29222607,29223900	0.925926
SK_MEL_5	chr8	18083350	18083362	18083351	-	High_confidence	4	6	13	0.517028	3.392747	chr8	18083239	18083389	SINE|MIR|MIR3	+	chr8	18056458	18083408	ASAH1|ENST00000636691.1	-	18056458,18058834,18059340,18059571,18061376,18061685,18062278,18063184,18064456,18067219,18069791,18071299,18075540,18083121	18057623,18058891,18059464,18059703,18061458,18061740,18062423,18063230,18064531,18067298,18069878,18071390,18075587,18083408	0.615385
SK_MEL_5	chr1	226765350	226765366	226765350	+	High_confidence	16	17	72	2.863538	4.897300	chr1	226765159	226765559	LTR|ERVL-MaLR|MSTA	+	chr1	226765375	226769112	STRG.9471.1	+	226765375,226768601	226765477,226769112	0.805556
SK_MEL_5	chr8	29748106	29748124	29748106	-	High_confidence	3	3	11	0.437485	3.095795	chr8	29747934	29748353	LTR|ERVL-MaLR|MSTA	-	chr8	29721253	29748109	LINC00589|ENST00000506121.3	-	29721253,29724876,29726155,29748014	29722151,29725019,29726423,29748109	0.818182
SK_MEL_5	chr6	136402808	136402822	136402821	-	RAMPAGE_only	10	10	16	0.636342	3.373557	chr6	136402625	136402935	SINE|Alu|AluYk3	+	chr6	136342280	136466875	MAP7|NM_001198615.1	-	136342280,136345855,136356691,136359819,136359980,136360696,136361004,136362449,136365734,136366326,136372500,136377754,136383670,136388392,136389353,136411619,136421700,136466760	136344238,136346079,136356794,136359877,136360031,136360798,136361179,136362702,136366018,136366439,136372625,136377868,136383781,136388510,136389517,136411697,136421799,136466875	0.875000
SK_MEL_5	chr12	22477294	22477295	22477294	-	High_confidence	7	7	11	0.437485	2.921928	chr12	22477054	22477335	DNA|hAT-Charlie|MER33	-	chr12	22470896	22477338	C2CD5|ENST00000537643.1	-	22470896,22471398,22471966,22472285,22472743,22474750,22477261	22470911,22471488,22472065,22472347,22472807,22474891,22477338	0.818182
SK_MEL_5	chr13	95273962	95273965	95273962	+	High_confidence	49	52	75	2.982853	4.735490	chr13	95273922	95274128	LTR|ERVL-MaLR|THE1B	+	chr13	95273974	95280758	STRG.84054.1	+	95273974,95277928,95278928	95274046,95278027,95280758	0.893333
SK_MEL_5	chr12	93173479	93173486	93173479	+	High_confidence	36	41	90	3.579423	4.117373	chr12	93173471	93174015	LINE|L2|L2c	-	chr12	93174365	93181832	LOC102724933|NR_120492.1	+	93174365,93175899,93181304	93174976,93176029,93181832	0.822222
SK_MEL_5	chr3	122745547	122745591	122745580	-	High_confidence	14	15	71	2.823767	4.124136	chr3	122745410	122746106	DNA|TcMar-Tigger|MER44C	+	chr3	122740002	122745818	STRG.25064.6	-	122740002,122741002,122745383	122740875,122741113,122745818	1.000000
SK_MEL_5	chr12	9567531	9567545	9567544	+	RAMPAGE_only	71	99	379	15.073348	3.677814	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9564589	9576264	STRG.75601.3	+	9564589,9567489,9569057,9570765,9571460,9573002,9573465,9574846,9575642,9576117	9565303,9567567,9569202,9570892,9571573,9573093,9573534,9574949,9575717,9576264	0.968338
SK_MEL_5	chr11	38593635	38593666	38593665	-	High_confidence	11	20	42	1.670397	4.341446	chr11	38593474	38593835	LTR|ERVL-MaLR|MLT1A0	-	chr11	38579991	38593660	STRG.71210.1	-	38579991,38581019,38593528	38580266,38581067,38593660	0.619048
SK_MEL_5	chr11	123458471	123458475	123458474	-	RAMPAGE_only	7	7	12	0.477256	3.027169	chr11	123458109	123458569	LTR|ERVL|MLT2B2	-	chr11	123453881	123454333	STRG.74706.1	-	123453881	123454333	0.583333
SK_MEL_5	chr7	103353930	103353952	103353930	+	High_confidence	7	8	17	0.676113	3.202820	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.705882
SK_MEL_5	chr17	81362233	81362237	81362236	+	High_confidence	18	19	29	1.153370	4.030395	chr17	81362040	81362404	LTR|ERVL-MaLR|THE1B	+	chr17	81362271	81374214	AC110285.3|ENST00000574472.1	+	81362271,81371516,81373734	81362321,81371651,81374214	0.620690
SK_MEL_5	chr14	56515405	56515421	56515405	+	RAMPAGE_only	11	18	28	1.113598	4.378783	chr14	56515216	56515600	LTR|ERVL-MaLR|THE1C	+	chr14	56514330	56551309	LOC101927690|NR_135241.1	+	56514330,56549270	56514517,56551309	0.500000
SK_MEL_5	chr1	28617958	28617974	28617958	-	RAMPAGE_only	3	3	9	0.357942	2.750000	chr1	28617880	28617910	SINE|MIR|MIR	-	chr1	28603100	28643005	TAF12|ENST00000263974.4	-	28603100,28605371,28613246,28617952,28621913,28642654	28603574,28605460,28613361,28618030,28622165,28643005	0.888889
SK_MEL_5	chr6	13319057	13319064	13319057	-	RAMPAGE_only	6	6	14	0.556799	3.180833	chr6	13318892	13319177	LINE|L1|L1MC4a	+	chr6	13266541	13326912	TBC1D7|ENST00000606214.5	-	13266541,13305061,13306397,13307599,13316570,13320907,13325093,13326786	13267835,13305187,13306527,13307745,13316708,13321095,13325174,13326912	0.857143
SK_MEL_5	chr8	29854562	29854563	29854562	-	High_confidence	80	80	80	3.181709	5.368420	chr8	29854392	29854757	LTR|ERVL-MaLR|THE1C	-	chr8	29815159	29854548	STRG.55701.1	-	29815159,29832277,29834283,29834837,29845313,29854474	29816292,29832405,29834396,29834900,29845451,29854548	0.787500
SK_MEL_5	chr4	123478076	123478079	123478078	+	High_confidence	7	12	15	0.596571	3.378783	chr4	123478093	123478212	SINE|MIR|MIR	+	chr4	123478112	123479080	STRG.31802.3	+	123478112	123479080	0.600000
SK_MEL_5	chr5	70401416	70401505	70401444	+	RAMPAGE_only	21	24	137	5.448677	5.711596	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.927007
SK_MEL_5	chr14	40954490	40954548	40954547	+	High_confidence	6	13	43	1.710169	4.668170	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954467	41106446	STRG.85742.2	+	40954467,40962789,40974339,41106296	40954952,40962842,40974390,41106446	0.674419
SK_MEL_5	chr4	186074252	186074307	186074252	+	RAMPAGE_only	14	14	44	1.749940	3.830989	chr4	186074192	186075298	DNA|TcMar-Tigger|Tigger3b	-	chr4	186069154	186085098	TLR3|NM_003265.2	+	186069154,186076612,186078839,186082319,186084644	186069248,186077060,186079031,186084172,186085098	1.000000
SK_MEL_5	chr19	34075778	34075821	34075820	-	High_confidence	149	167	693	27.561557	6.642344	chr19	34075699	34076456	LTR|ERV1|LTR8B	+	chr19	33996885	34075869	STRG.106317.1	-	33996885,34000340,34003594,34005338,34040286,34045933,34061381,34075598	33998551,34000398,34003707,34005421,34040356,34046029,34061490,34075869	0.897547
SK_MEL_5	chr1	147173173	147173226	147173225	+	High_confidence	10	10	37	1.471541	4.729283	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.918919
SK_MEL_5	chr2	96638013	96638032	96638022	-	High_confidence	5	5	14	0.556799	3.039149	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.571429
SK_MEL_5	chr3	98732885	98732899	98732885	-	High_confidence	3	3	8	0.318171	3.000000	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98714332	98732651	ST3GAL6-AS1|NR_046683.1	-	98714332,98715375,98715649,98718418,98732425	98714498,98715521,98715777,98718521,98732651	0.875000
SK_MEL_5	chr10	30999457	30999550	30999519	-	RAMPAGE_only	31	35	103	4.096451	5.841468	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	31031937	ZNF438|NM_001143766.1	-	30844633,30848530,30876997,30908932,30923286,30941574,30984368,31031832	30845573,30850367,30877065,30909015,30923415,30941651,30984426,31031937	0.504854
SK_MEL_5	chr6	105370451	105370452	105370451	-	RAMPAGE_only	35	35	48	1.909026	4.542705	chr6	105370327	105371212	LINE|L1|L1MC1	+	chr6	105277564	105403084	PREP|ENST00000369110.7	-	105277564,105281745,105282450,105285485,105288757,105323664,105328828,105333313,105352971,105368902,105373368,105376124,105377385,105397852,105402846	105278438,105281902,105282582,105285580,105288894,105323768,105329026,105333505,105353077,105369024,105373578,105376255,105377519,105397927,105403084	0.812500
SK_MEL_5	chr12	93773408	93773412	93773408	+	RAMPAGE_only	41	47	83	3.301023	4.958164	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.746988
SK_MEL_5	chr6	68847579	68847580	68847579	+	RAMPAGE_only	12	12	12	0.477256	3.251629	chr6	68847388	68847738	LTR|ERVL-MaLR|THE1A	+	chr6	68845602	68975752	STRG.43594.1	+	68845602,68930558,68936518,68943829,68956023,68956644,68974762,68975233	68845744,68930669,68936680,68943994,68956188,68956809,68974864,68975752	0.583333
SK_MEL_5	chrX	94600170	94600178	94600177	-	High_confidence	115	115	173	6.880447	6.173939	chrX	94599902	94600549	LTR|ERVL|LTR66	-	chrX	94565680	94600311	STRG.117906.2	-	94565680,94600106	94571148,94600311	0.630058
SK_MEL_5	chr22	32232748	32232756	32232755	-	High_confidence	7	7	15	0.596571	2.549255	chr22	32232728	32232806	LINE|L2|L2c	+	chr22	32212459	32233248	STRG.114246.1	-	32212459,32220919,32224266,32225654,32229193,32230967,32232898,32233148	32218725,32221022,32224482,32225823,32229344,32231075,32233034,32233248	1.000000
SK_MEL_5	chr13	46782904	46782914	46782907	-	RAMPAGE_only	7	7	17	0.676113	3.625000	chr13	46782890	46782999	LTR|ERVL-MaLR|MLT1I	+	chr13	46775385	46781568	ESD|ENST00000471867.2	-	46775385,46779934,46781495	46777623,46780033,46781568	0.705882
SK_MEL_5	chr5	88033393	88033394	88033393	+	High_confidence	31	34	43	1.710169	4.630413	chr5	88033199	88033548	LTR|ERVL-MaLR|THE1B	+	chr5	88033413	88060806	STRG.36901.3	+	88033413,88059331	88033474,88060806	0.790698
SK_MEL_5	chr5	32403108	32403149	32403145	-	RAMPAGE_only	5	5	20	0.795427	3.787144	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.950000
SK_MEL_5	chr11	108224074	108224093	108224074	+	High_confidence	205	214	317	12.607523	6.232795	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.791798
SK_MEL_5	chr22	30777414	30777418	30777414	+	RAMPAGE_only	8	9	15	0.596571	2.950212	chr22	30777233	30777578	LTR|ERVL-MaLR|THE1B	+	chr22	30764252	30907824	OSBP2|NM_001282740.1	+	30764252,30870428,30887425,30888222,30889179,30889489,30890727,30893121,30893462,30893637,30893816,30905836,30906196	30764392,30870682,30887618,30888340,30889234,30889636,30890973,30893242,30893566,30893733,30894001,30906069,30907824	0.600000
SK_MEL_5	chr5	31538144	31538164	31538163	+	High_confidence	187	187	314	12.488209	5.242940	chr5	31537737	31538167	LTR|ERVL-MaLR|MLT1J	-	chr5	31538172	31545714	C5orf22|ENST00000510530.1	+	31538172,31540948,31541280,31545645	31538689,31541011,31541402,31545714	0.974522
SK_MEL_5	chr12	97781718	97781756	97781718	+	High_confidence	8	8	22	0.874970	3.697846	chr12	97781611	97781986	LTR|ERVL-MaLR|THE1B	+	chr12	97781728	97824769	STRG.79291.1	+	97781728,97821902,97824418	97781902,97821977,97824769	0.590909
SK_MEL_5	chr15	92724252	92724332	92724331	-	High_confidence	181	181	542	21.556081	7.083672	chr15	92724218	92724390	LTR|ERVL|LTR33	-	chr15	92619301	92724372	STRG.92242.2	-	92619301,92630213,92699039,92724161	92619459,92630345,92699163,92724372	0.518450
SK_MEL_5	chr3	178860335	178860441	178860405	-	High_confidence	14	19	99	3.937365	5.430901	chr3	178859948	178865979	LINE|L1|L1PA2	+	chr3	178525466	178860405	KCNMB2-AS1|NR_126561.1	-	178525466,178748428,178749045,178801792,178859488,178860293	178526625,178748485,178749236,178801934,178859623,178860405	0.898990
SK_MEL_5	chr1	240339116	240339117	240339116	+	High_confidence	49	50	70	2.783996	5.342916	chr1	240338677	240339204	DNA|hAT-Charlie|MER1A	-	chr1	240339119	240475663	STRG.10256.1	+	240339119,240355815,240392510,240438060,240472371,240474127	240339249,240355908,240392562,240438210,240472453,240475663	0.885714
SK_MEL_5	chr9	103741106	103741111	103741106	-	High_confidence	105	133	260	10.340555	5.349480	chr9	103740939	103741293	LTR|ERVL-MaLR|THE1B	-	chr9	103718662	103741097	STRG.63386.1	-	103718662,103741023	103718980,103741097	0.911538
SK_MEL_5	chr7	30548885	30548905	30548904	-	RAMPAGE_only	3	3	8	0.318171	2.750000	chr7	30548762	30548906	LTR|Gypsy?|LTR88b	-	chr7	30516974	30561516	GARS-DT|ENST00000578293.6	-	30516974,30524366,30550635,30551317,30552099,30561465	30517498,30524486,30550781,30551395,30552179,30561516	0.625000
SK_MEL_5	chr10	102449836	102449845	102449844	+	High_confidence	5	5	9	0.357942	2.947703	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449852	102456293	RPARP-AS1|ENST00000492465.2	+	102449852,102450186,102451398,102452089,102455336	102450022,102450360,102451555,102452187,102456293	1.000000
SK_MEL_5	chr7	113743288	113743317	113743288	-	High_confidence	2	2	10	0.397714	2.921928	chr7	113742900	113748900	LINE|L1|L1PA2	+	chr7	113742751	113743266	STRG.52912.1	-	113742751	113743266	0.500000
SK_MEL_5	chr20	2870663	2870675	2870674	+	RAMPAGE_only	6	8	11	0.437485	2.663533	chr20	2870623	2870697	SINE|MIR|MIR1_Amn	-	chr20	2873419	3005104	PTPRA|ENST00000455631.5	+	2873419,2964271,2964860,2986764,2988031,2988337,3005055	2873760,2964350,2965202,2986849,2988105,2988474,3005104	0.818182
SK_MEL_5	chr13	109453103	109453104	109453103	+	High_confidence	6	6	9	0.357942	2.725481	chr13	109452927	109453264	LTR|ERVL-MaLR|THE1B	+	chr13	109453123	109465126	STRG.84418.1	+	109453123,109464295,109464843	109453189,109464370,109465126	0.555556
SK_MEL_5	chr5	43580715	43580731	43580715	-	RAMPAGE_only	7	7	19	0.755656	3.616349	chr5	43580447	43581389	LTR|ERVK|LTR5_Hs	+	chr5	43571593	43586952	STRG.35331.5	-	43571593,43583466,43586837	43575935,43583566,43586952	0.894737
SK_MEL_5	chr1	225774965	225774970	225774965	+	RAMPAGE_only	3	3	9	0.357942	3.169925	chr1	225774781	225775174	LTR|ERVL-MaLR|MSTA	+	chr1	225777812	225790466	SRP9|NM_001130440.1	+	225777812,225783299,225786861,225789239	225778012,225783368,225786985,225790466	0.888889
SK_MEL_5	chr1	39026127	39026136	39026135	+	High_confidence	3	3	10	0.397714	2.921928	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
SK_MEL_5	chr8	29748295	29748332	29748331	+	High_confidence	12	12	21	0.835199	3.820889	chr8	29748353	29748657	LTR|ERVL-MaLR|MLT1B	+	chr8	29748324	29798490	LINC02099|ENST00000523123.5	+	29748324,29790331,29791094,29796834	29748579,29790447,29791382,29798490	0.761905
SK_MEL_5	chr2	21710602	21710654	21710602	-	RAMPAGE_only	8	10	31	1.232912	4.232760	chr2	21710475	21710819	LTR|ERVL-MaLR|THE1C	-	chr2	21638430	21649563	AC009411.1|ENST00000412424.1	-	21638430,21647537,21649338	21638538,21647752,21649563	0.516129
SK_MEL_5	chr7	95676632	95676674	95676673	-	High_confidence	80	82	530	21.078825	6.777265	chr7	95676446	95676675	LINE|L2|L2c	+	chr7	95653419	95676898	STRG.51800.1	-	95653419,95655461,95675201	95654119,95655639,95676898	0.845283
SK_MEL_5	chr9	129489206	129489253	129489251	+	High_confidence	7	13	27	1.073827	3.950064	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.777778
SK_MEL_5	chr12	19243265	19243300	19243299	+	RAMPAGE_only	6	6	11	0.437485	2.913977	chr12	19243242	19243414	SINE|MIR|MIRb	+	chr12	19236923	19361662	PLEKHA5|ENST00000536974.5	+	19236923,19253939,19255044,19257432,19260948,19265749,19269769,19274515,19283279,19287472,19320561,19322309,19322517,19336514,19343322,19345841,19346993,19348398,19353883,19358227,19359411,19361581	19237034,19254023,19255165,19257537,19261021,19265850,19269885,19274983,19283745,19287556,19320624,19322390,19322667,19336616,19343434,19345888,19347182,19348519,19354002,19358437,19359546,19361662	0.636364
SK_MEL_5	chr22	50757129	50757130	50757129	+	High_confidence	8	8	12	0.477256	3.022055	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.916667
SK_MEL_5	chr1	240406372	240406408	240406407	+	High_confidence	66	67	267	10.618955	6.673884	chr1	240406423	240406583	SINE|MIR|MIR	+	chr1	240405960	240475663	STRG.10256.3	+	240405960,240414332,240438060,240472371,240474127	240407374,240414448,240438210,240472453,240475663	0.955056
SK_MEL_5	chr3	37163366	37163387	37163366	-	RAMPAGE_only	71	79	111	4.414622	6.084429	chr3	37163292	37163695	LTR|ERVL-MaLR|MLT1J2	+	chr3	37052889	37174564	LRRFIP2|ENST00000336686.8	-	37052889,37054410,37055085,37058789,37063741,37065809,37066223,37072789,37075023,37083635,37091466,37094791,37096615,37102923,37105454,37108072,37108636,37109526,37109652,37110990,37112914,37115053,37121491,37121634,37127629,37129062,37148893,37174538	37053961,37054515,37055165,37058910,37063791,37065942,37066325,37072882,37075116,37083806,37091538,37094908,37096660,37103013,37105523,37108129,37108684,37109571,37109703,37111065,37112980,37115095,37121536,37121691,37127680,37129149,37149038,37174564	0.630631
SK_MEL_5	chr2	40321651	40321652	40321651	-	RAMPAGE_only	65	65	65	2.585139	5.279835	chr2	40321470	40321842	LTR|ERVL-MaLR|THE1C	-	chr2	40114730	40430271	SLC8A1|ENST00000407929.6	-	40114730,40139400,40160764,40164853,40174824,40177751,40178386,40428472	40115629,40139676,40160864,40164984,40174842,40177855,40178493,40430271	0.892308
SK_N_DZ_cytosolic_fraction	chr1	112850238	112850265	112850264	+	High_confidence	3	3	7	0.192570	2.521641	chr1	112850184	112850373	SINE|MIR|MIR	+	chr1	112850075	112877867	AL390729.1|ENST00000422022.1	+	112850075,112877729	112850427,112877867	1.000000
SK_N_DZ_cytosolic_fraction	chr11	72111472	72111497	72111496	-	High_confidence	8	12	20	0.550199	4.142664	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.950000
SK_N_DZ_cytosolic_fraction	chr12	53033909	53034028	53034027	+	RAMPAGE_only	9	9	88	2.420876	5.988808	chr12	53034069	53034237	DNA|hAT-Charlie|MER20B	+	chr12	53037725	53040352	EIF4B|ENST00000549592.1	+	53037725,53039629,53040142	53039343,53039702,53040352	0.727273
SK_N_DZ_cytosolic_fraction	chr2	55618850	55618889	55618850	-	High_confidence	21	25	99	2.723486	5.923556	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.969697
SK_N_DZ_cytosolic_fraction	chr8	106060538	106060548	106060538	-	High_confidence	2	2	6	0.165060	2.584963	chr8	106060473	106060807	LTR|ERVL|LTR18A	+	chr8	105784804	106060477	ZFPM2-AS1|ENST00000524045.6	-	105784804,105787066,105787448,105798324,106059080,106060380	105785217,105787221,105787596,105798442,106059136,106060477	0.500000
SK_N_DZ_cytosolic_fraction	chr12	14665635	14665645	14665644	+	High_confidence	5	5	12	0.330119	3.418296	chr12	14665652	14665749	LINE|L2|L2a	+	chr12	14665654	14757963	AC010168.1|ENST00000501178.2	+	14665654,14665858,14672265,14718034,14757594	14665697,14666013,14672314,14718075,14757963	0.750000
SK_N_DZ_cytosolic_fraction	chr11	85752699	85752703	85752699	-	RAMPAGE_only	4	4	11	0.302610	3.459432	chr11	85752649	85752825	SINE|MIR|MIRb	+	chr11	85695194	85757725	SYTL2|ENST00000524452.5	-	85695194,85696182,85697978,85700514,85704857,85707428,85709330,85714412,85717482,85718789,85720857,85727895,85733938,85736500,85737574,85745636,85748271,85757624	85695340,85696388,85698078,85700593,85705028,85707531,85709500,85714507,85717530,85718843,85720959,85727967,85734742,85736612,85737656,85745772,85748423,85757725	1.000000
SK_N_DZ_cytosolic_fraction	chr1	111755119	111755146	111755119	+	High_confidence	3	3	11	0.302610	3.321928	chr1	111755062	111755145	LINE|L2|L2a	-	chr1	111755304	111768016	DDX20|ENST00000369702.4	+	111755304,111756645,111759399,111760473,111760705,111760986,111761225,111762254,111762676,111762905,111765736	111756225,111756740,111759568,111760588,111760848,111761125,111761284,111762337,111762782,111763007,111768016	0.909091
SK_N_DZ_cytosolic_fraction	chr19	10681280	10681329	10681328	+	RAMPAGE_only	7	7	25	0.687749	4.483856	chr19	10681334	10681610	SINE|Alu|AluJb	+	chr19	10670605	10689312	ILF3|ENST00000588657.5	+	10670605,10670973,10671357,10677162,10678612,10679096,10679815,10680345,10681018,10681218,10681992,10682536,10683124,10683365,10683635,10683916,10687345,10688549,10689178	10670608,10671203,10671535,10677310,10678704,10679192,10679927,10680443,10681130,10681329,10682192,10682704,10683262,10683542,10683789,10683970,10687708,10688678,10689312	0.640000
SK_N_DZ_cytosolic_fraction	chr5	33441368	33441390	33441368	+	High_confidence	3	3	15	0.412649	3.506891	chr5	33441307	33441471	SINE|MIR|MIR3	-	chr5	33441380	33448730	TARS|ENST00000506040.1	+	33441380,33445323,33448540	33441864,33445404,33448730	0.666667
SK_N_DZ_cytosolic_fraction	chr8	83911056	83911057	83911056	+	High_confidence	62	63	70	1.925697	5.182672	chr8	83911058	83911187	LTR|ERV1|LTR38A1	+	chr8	83911073	83980159	MSTRG.33863.1	+	83911073,83967327,83978571,83979924	83911505,83976926,83978766,83980159	0.814286
SK_N_DZ_cytosolic_fraction	chr7	101308269	101308317	101308316	+	High_confidence	83	93	563	15.488106	7.045466	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.966252
SK_N_DZ_cytosolic_fraction	chr5	78388844	78388871	78388844	+	RAMPAGE_only	2	2	8	0.220080	2.807355	chr5	78388798	78388903	LINE|CR1|L3	-	chr5	78360627	78416635	SCAMP1|ENST00000511551.2	+	78360627,78370619,78388836,78415519,78416540	78360728,78370805,78388914,78415618,78416635	0.625000
SK_N_DZ_cytosolic_fraction	chr4	6673446	6673447	6673446	+	High_confidence	210	210	212	5.832111	5.992525	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	0.990566
SK_N_DZ_cytosolic_fraction	chr2	15590772	15590803	15590792	+	High_confidence	20	28	108	2.971075	5.384246	chr2	15590742	15590919	SINE|Alu|AluSc8	-	chr2	15591177	15631111	DDX1|ENST00000381341.6	+	15591177,15591653,15595144,15595489,15596733,15597374,15599668,15602547,15603191,15603813,15604436,15605949,15606149,15607174,15613223,15617243,15618180,15620207,15621064,15623435,15627053,15628444,15628637,15628796,15629601,15629989,15630775	15591286,15591949,15595196,15595553,15596763,15597471,15599716,15602631,15603275,15603890,15604509,15606026,15606264,15607313,15613284,15617342,15618270,15620396,15621116,15623582,15627145,15628517,15628710,15628839,15629697,15630110,15631111	0.990741
SK_N_DZ_cytosolic_fraction	chr21	38121347	38121362	38121347	-	High_confidence	86	87	155	4.264043	5.909177	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38006539	38121345	MSTRG.22828.4	-	38006539,38120306,38121127	38006826,38120408,38121345	0.593548
SK_N_DZ_cytosolic_fraction	chr6	82101791	82101800	82101791	-	RAMPAGE_only	7	7	16	0.440159	3.625000	chr6	82101303	82107312	LINE|L1|L1PA2	+	chr6	81845184	81933480	LINC02542|ENST00000418567.1	-	81845184,81928856,81933428	81845909,81928901,81933480	0.750000
SK_N_DZ_cytosolic_fraction	chr10	86981263	86981264	86981263	+	RAMPAGE_only	10	10	11	0.302610	2.921928	chr10	86981077	86981384	LTR|ERVL-MaLR|THE1C	+	chr10	86970740	87010126	AGAP11|ENST00000433214.2	+	86970740,86983139,86983853,86992246,86993361,86994823,86999448,87000318,87001635,87004324,87007654,87008354	86970915,86983240,86983941,86992469,86993552,86994903,86999591,87000434,87001736,87004360,87007706,87010126	0.818182
SK_N_DZ_cytosolic_fraction	chr3	9391827	9391828	9391827	-	RAMPAGE_only	42	47	53	1.458028	4.808009	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9385835	9397496	MSTRG.23926.25	-	9385835,9388086,9390279,9397423	9385923,9388127,9391826,9397496	0.886792
SK_N_DZ_cytosolic_fraction	chr3	194605542	194605543	194605542	-	RAMPAGE_only	9	10	10	0.275100	2.947703	chr3	194605376	194605723	LTR|ERVL-MaLR|THE1B	-	chr3	194587677	194617155	TMEM44|ENST00000432352.5	-	194587677,194593040,194604286,194610915,194615568,194617098	194588639,194593073,194604445,194611020,194615697,194617155	0.500000
SK_N_DZ_cytosolic_fraction	chr7	18821486	18821543	18821521	-	High_confidence	14	17	92	2.530916	5.244757	chr7	18821313	18821549	LINE|L2|L2b	-	chr7	18791170	18821513	MSTRG.31376.4	-	18791170,18800707,18803524,18810122,18820978	18793496,18800805,18805863,18810172,18821513	0.836957
SK_N_DZ_cytosolic_fraction	chr18	7946875	7946883	7946878	+	High_confidence	4	4	12	0.330119	3.277613	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.583333
SK_N_DZ_cytosolic_fraction	chr2	84563065	84563066	84563065	+	RAMPAGE_only	19	20	20	0.550199	3.932138	chr2	84562873	84563235	LTR|ERVL-MaLR|THE1B	+	chr2	84517822	84584791	DNAH6|ENST00000494025.1	+	84517822,84548287,84549888,84552917,84557734,84573466,84577256,84579526,84583998	84518051,84548417,84550057,84553034,84557935,84573587,84577408,84579679,84584791	0.850000
SK_N_DZ_cytosolic_fraction	chrX	147937525	147937560	147937559	+	RAMPAGE_only	2	2	8	0.220080	3.000000	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147943244	147948534	FMR1|ENST00000463120.2	+	147943244,147944868,147945533,147948412	147943326,147945051,147945616,147948534	0.875000
SK_N_DZ_cytosolic_fraction	chr1	113758055	113758085	113758055	-	RAMPAGE_only	7	7	27	0.742769	4.373661	chr1	113758040	113758255	SINE|Alu|AluSq2	+	chr1	113697201	113759155	PHTF1|ENST00000393357.6	-	113697201,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113759155	0.814815
SK_N_DZ_cytosolic_fraction	chr16	13779762	13779789	13779762	-	High_confidence	39	40	65	1.788147	5.632660	chr16	13779489	13780125	LTR|ERV1|LTR9	+	chr16	13730136	13779748	U95743.1|ENST00000573369.5	-	13730136,13767036,13777719,13778900,13779697	13730436,13767366,13777844,13779095,13779748	0.692308
SK_N_DZ_cytosolic_fraction	chr2	105329640	105329671	105329670	-	High_confidence	2	2	7	0.192570	2.807355	chr2	105329666	105329774	LTR|ERV1|LTR2752	-	chr2	105264389	105329714	TGFBRAP1|NM_001142621.2	-	105264389,105269271,105272854,105273543,105275559,105277613,105280381,105284315,105296355,105298510,105307613,105329624	105267559,105269705,105273014,105273690,105275703,105277671,105280723,105284398,105296510,105298705,105308315,105329714	1.000000
SK_N_DZ_cytosolic_fraction	chr7	100102067	100102109	100102098	+	High_confidence	7	12	37	1.017868	4.682162	chr7	100102098	100102390	SINE|Alu|AluSx1	+	chr7	100102085	100103296	AP4M1|ENST00000495154.1	+	100102085,100102674,100102863,100103227	100102393,100102781,100102960,100103296	0.810811
SK_N_DZ_cytosolic_fraction	chr8	139602117	139602130	139602129	-	High_confidence	4	4	10	0.275100	2.947703	chr8	139601912	139602270	LTR|ERVL-MaLR|MLT1I	-	chr8	139601077	139602064	KCNK9|ENST00000523653.1	-	139601077,139602012	139601601,139602064	0.800000
SK_N_DZ_cytosolic_fraction	chr6	79631256	79631329	79631302	+	High_confidence	221	223	822	22.613185	6.525068	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.987835
SK_N_DZ_cytosolic_fraction	chr2	96321273	96321296	96321273	-	High_confidence	31	37	97	2.668466	5.873705	chr2	96321082	96321284	SINE|MIR|MIRb	-	chr2	96274335	96321731	MSTRG.20099.1	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392,96307309,96321135	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305544,96307406,96321731	0.659794
SK_N_DZ_cytosolic_fraction	chr11	96387561	96387574	96387561	-	High_confidence	5	5	11	0.302610	3.095795	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	1.000000
SK_N_DZ_cytosolic_fraction	chr18	36122222	36122234	36122233	-	High_confidence	4	4	15	0.412649	3.664498	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.933333
SK_N_DZ_cytosolic_fraction	chr4	140267727	140267769	140267762	+	High_confidence	72	91	455	12.517030	5.452301	chr4	140267433	140267902	LTR|ERVL|LTR33A_	+	chr4	140267623	140269668	MSTRG.27125.2	+	140267623,140269385	140267981,140269668	0.978022
SK_N_DZ_cytosolic_fraction	chrX	149436201	149436260	149436232	-	High_confidence	42	50	312	8.583107	5.920930	chrX	149435837	149441830	LINE|L1|L1PA3	+	chrX	149364215	149436262	MSTRG.37012.1	-	149364215,149366379,149378932,149379128,149436074	149364593,149366517,149379033,149379280,149436262	0.881410
SK_N_DZ_cytosolic_fraction	chr1	147173173	147173261	147173225	+	High_confidence	39	43	261	7.180099	6.559794	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.812261
SK_N_DZ_cytosolic_fraction	chr12	121582278	121582286	121582278	-	RAMPAGE_only	40	41	68	1.870677	5.597276	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121429095	121581015	KDM2B|NM_032590.4	-	121429095,121439856,121440815,121441069,121442156,121442991,121443679,121444011,121444449,121445274,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549459,121574546,121575780,121578801,121580785	121430469,121440075,121440977,121441233,121442836,121443030,121443793,121444272,121444536,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548983,121549638,121574593,121575859,121578946,121581015	0.911765
SK_N_DZ_cytosolic_fraction	chr3	101466850	101466886	101466874	-	RAMPAGE_only	4	4	15	0.412649	3.521641	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.866667
SK_N_DZ_cytosolic_fraction	chr1	10425643	10425680	10425643	+	RAMPAGE_only	7	7	20	0.550199	4.221928	chr1	10425394	10425655	LTR|ERVK|LTR5_Hs	+	chr1	10430101	10452003	APITD1-CORT|NM_001270517.1	+	10430101,10433841,10434656,10440346,10442264,10451376	10430568,10433965,10434690,10440413,10442441,10452003	0.850000
SK_N_DZ_cytosolic_fraction	chr5	149399006	149399007	149399006	-	RAMPAGE_only	8	8	10	0.275100	2.646439	chr5	149398910	149399196	LTR|ERVL-MaLR|THE1B	-	chr5	149374266	149404202	IL17B|NM_001317987.1	-	149374266,149376735,149404107	149374600,149377025,149404202	0.500000
SK_N_DZ_cytosolic_fraction	chr15	48020481	48020482	48020481	+	High_confidence	440	523	559	15.378066	6.758519	chr15	48020292	48020661	LTR|ERVL-MaLR|THE1D	+	chr15	48020491	48050505	MSTRG.11375.2	+	48020491,48048789	48020578,48050505	0.812165
SK_N_DZ_cytosolic_fraction	chr12	22082502	22082524	22082502	-	RAMPAGE_only	2	2	8	0.220080	2.521641	chr12	22082443	22082846	LTR|ERVL|LTR16A	+	chr12	22063772	22070613	ST8SIA1|ENST00000536535.1	-	22063772,22066344,22068862,22070571	22063927,22066435,22069020,22070613	0.875000
SK_N_DZ_cytosolic_fraction	chr2	3536836	3536882	3536845	-	High_confidence	9	9	80	2.200797	5.772135	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.825000
SK_N_DZ_cytosolic_fraction	chr10	84279967	84279968	84279967	+	High_confidence	36	38	40	1.100398	4.504121	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279979	84294659	LINC00858|ENST00000415469.5	+	84279979,84288223,84288593,84288974,84291406,84293245	84280065,84288420,84288780,84289044,84292137,84294659	0.550000
SK_N_DZ_cytosolic_fraction	chr20	50172404	50172445	50172444	+	High_confidence	3	3	13	0.357629	2.855389	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.846154
SK_N_DZ_cytosolic_fraction	chr9	62897430	62897434	62897430	+	High_confidence	110	110	188	5.171872	6.524542	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.829787
SK_N_DZ_cytosolic_fraction	chr9	15883060	15883077	15883060	+	RAMPAGE_only	8	8	33	0.907829	4.449699	chr9	15883037	15883358	SINE|Alu|AluJr	-	chr9	15845638	15971897	CCDC171|ENST00000470191.5	+	15845638,15846701,15848892,15874531,15920269,15971608	15845701,15846847,15848947,15874663,15920422,15971897	0.636364
SK_N_DZ_cytosolic_fraction	chr8	30812418	30812475	30812453	-	High_confidence	7	7	30	0.825299	4.548394	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	1.000000
SK_N_DZ_cytosolic_fraction	chr12	69592123	69592147	69592146	+	RAMPAGE_only	2	3	9	0.247590	3.000000	chr12	69592196	69592505	SINE|Alu|AluSp	+	chr12	69585681	69601577	CCT2|NM_001198842.1	+	69585681,69586269,69586752,69587504,69587929,69588149,69589484,69592058,69592975,69593509,69597155,69597637,69597967,69598321,69599862,69601294	69586009,69586344,69586818,69587616,69588006,69588262,69589687,69592159,69593103,69593613,69597275,69597766,69598071,69598421,69600004,69601577	0.888889
SK_N_DZ_cytosolic_fraction	chr8	75324596	75324620	75324606	-	High_confidence	29	32	73	2.008227	5.742774	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223702	75324741	CASC9|ENST00000522183.1	-	75223702,75324564	75224358,75324741	0.534247
SK_N_DZ_cytosolic_fraction	chrX	71299969	71300460	71300459	+	RAMPAGE_only	34	53	824	22.668204	6.265816	chrX	71300434	71300519	SINE|Alu|AluSx	-	chrX	71291994	71301168	NONO|ENST00000490044.5	+	71291994,71294218,71296564,71296850,71297376,71297835,71298468,71298706,71299941	71293041,71294528,71296660,71297047,71297461,71297938,71298508,71298816,71301168	0.998786
SK_N_DZ_cytosolic_fraction	chr16	58755976	58755977	58755976	-	RAMPAGE_only	36	37	37	1.017868	4.350209	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	0.972973
SK_N_DZ_cytosolic_fraction	chr15	74156252	74156264	74156252	-	RAMPAGE_only	2	2	8	0.220080	2.521641	chr15	74156094	74156504	LTR|ERV1|MER92A	+	chr15	74152799	74179226	AC010931.3|ENST00000561647.1	-	74152799,74156126,74179155	74153205,74156203,74179226	0.875000
SK_N_DZ_cytosolic_fraction	chr1	166850152	166850178	166850152	+	RAMPAGE_only	2	2	7	0.192570	2.584963	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.857143
SK_N_DZ_cytosolic_fraction	chr2	215383357	215383388	215383357	-	High_confidence	4	4	23	0.632729	3.975418	chr2	215383001	215383307	SINE|Alu|AluSz	-	chr2	215379204	215383483	FN1|ENST00000490833.5	-	215379204,215380810,215382002,215382211,215383327	215379317,215381080,215382048,215382325,215383483	0.521739
SK_N_DZ_cytosolic_fraction	chr2	15561999	15562056	15562044	+	High_confidence	15	15	89	2.448386	5.834209	chr2	15561879	15562107	LTR|ERV1|MER83	-	chr2	15561376	15574960	MSTRG.19151.1	+	15561376,15564101,15565064,15573483	15562183,15564274,15565198,15574960	0.741573
SK_N_DZ_cytosolic_fraction	chr7	102342150	102342151	102342150	+	RAMPAGE_only	10	10	13	0.357629	3.392747	chr7	102341963	102342347	LTR|ERVL-MaLR|MSTA	+	chr7	102363896	102426676	PRKRIP1|ENST00000496391.5	+	102363896,102365954,102375822,102376211,102395976,102397619,102399547,102404597,102407433,102425013	102364411,102366076,102375949,102376322,102396537,102397698,102399648,102404683,102407498,102426676	0.538462
SK_N_DZ_cytosolic_fraction	chr2	15561406	15561461	15561414	+	High_confidence	69	113	596	16.395934	7.613069	chr2	15561455	15561567	SINE|MIR|MIRc	+	chr2	15561376	15574960	MSTRG.19151.1	+	15561376,15564101,15565064,15573483	15562183,15564274,15565198,15574960	0.946309
SK_N_DZ_cytosolic_fraction	chr7	93591519	93591699	93591522	+	High_confidence	11	12	113	3.108625	5.982406	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591206	93811677	MSTRG.32167.1	+	93591206,93807203	93591771,93811677	0.707965
SK_N_DZ_cytosolic_fraction	chr17	51153837	51153859	51153852	+	High_confidence	15	15	52	1.430518	5.188758	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51153664	51161898	NME1|ENST00000013034.3	+	51153664,51154224,51155650,51159979,51161159,51161727	51153724,51154444,51155780,51160081,51161272,51161898	0.673077
SK_N_DZ_cytosolic_fraction	chr8	83911140	83911141	83911140	+	High_confidence	63	63	77	2.118267	5.898754	chr8	83911058	83911187	LTR|ERV1|LTR38A1	+	chr8	83911073	83980159	MSTRG.33863.1	+	83911073,83967327,83978571,83979924	83911505,83976926,83978766,83980159	0.558442
SK_N_DZ_cytosolic_fraction	chr3	128458087	128458145	128458144	+	High_confidence	62	63	295	8.115437	6.172155	chr3	128458121	128458425	LINE|L2|L2	-	chr3	128458109	128464761	MSTRG.25223.1	+	128458109,128464695	128464550,128464761	0.983051
SK_N_DZ_cytosolic_fraction	chr2	6866552	6866553	6866552	-	High_confidence	9	9	13	0.357629	3.418296	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.846154
SK_N_DZ_cytosolic_fraction	chr12	64439297	64439315	64439314	+	RAMPAGE_only	5	6	13	0.357629	3.085055	chr12	64439324	64439679	DNA|hAT-Charlie|Charlie4a	+	chr12	64404372	64448684	XPOT|NM_007235.4	+	64404372,64409961,64414906,64416697,64418045,64418875,64420069,64420352,64421234,64423004,64423181,64424598,64425037,64425337,64425814,64428050,64430048,64431537,64433413,64434506,64434793,64435626,64439243,64445074,64448104	64404804,64410095,64414989,64416754,64418115,64419094,64420254,64420521,64421471,64423043,64423244,64424723,64425182,64425457,64425909,64428120,64430287,64431823,64433603,64434623,64434909,64435674,64439315,64445131,64448684	1.000000
SK_N_DZ_cytosolic_fraction	chr10	104254172	104254185	104254172	+	High_confidence	6	6	11	0.302610	2.921928	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254163	104266190	GSTO1|ENST00000493946.1	+	104254163,104255162,104259575,104262978,104266083	104254499,104255271,104259798,104263077,104266190	0.818182
SK_N_DZ_cytosolic_fraction	chr1	151728057	151728072	151728071	+	High_confidence	3	3	7	0.192570	2.521641	chr1	151728062	151728145	LINE|CR1|L3b	+	chr1	151728428	151729606	RIIAD1|ENST00000427205.1	+	151728428,151728765,151729487	151728475,151728893,151729606	0.571429
SK_N_DZ_cytosolic_fraction	chr2	40453541	40453547	40453546	-	High_confidence	155	155	310	8.528087	6.838992	chr2	40453521	40453703	DNA|hAT-Charlie|MER5B	+	chr2	40430019	40453438	SLC8A1|ENST00000455476.5	-	40430019,40453160	40430304,40453438	0.654839
SK_N_DZ_cytosolic_fraction	chr4	176190885	176190892	176190891	-	RAMPAGE_only	8	10	13	0.357629	3.584963	chr4	176190387	176190980	LTR|ERVL-MaLR|MLT1E2	-	chr4	176184659	176194877	SPATA4|ENST00000515234.1	-	176184659,176188118,176192626,176192957,176193452	176184892,176188235,176192847,176193076,176194877	0.538462
SK_N_DZ_cytosolic_fraction	chr14	88824135	88824139	88824138	+	High_confidence	136	136	215	5.914641	6.463491	chr14	88824007	88824142	SINE|MIR|MIR3	+	chr14	88824152	88853046	TTC8|ENST00000556077.5	+	88824152,88824573,88836907,88839451,88840864,88841036,88841424,88843805,88852970	88824214,88824821,88837066,88839572,88840923,88841196,88841514,88843850,88853046	0.725581
SK_N_DZ_cytosolic_fraction	chr4	61646912	61646926	61646915	+	RAMPAGE_only	15	16	33	0.907829	4.086526	chr4	61641294	61647303	LINE|L1|L1PA3	-	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.939394
SK_N_DZ_cytosolic_fraction	chr16	89958341	89958353	89958341	+	High_confidence	333	338	888	24.428842	7.004195	chr16	89958222	89958381	LTR|ERVL-MaLR|MLT1K	-	chr16	89958350	89959365	DEF8|ENST00000562044.1	+	89958350,89959013	89958533,89959365	0.927928
SK_N_DZ_cytosolic_fraction	chr22	37849302	37849333	37849317	-	High_confidence	113	115	447	12.296951	5.995300	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.995526
SK_N_DZ_cytosolic_fraction	chr4	75401194	75401195	75401194	+	High_confidence	9	10	10	0.275100	2.947703	chr4	75401194	75407226	LINE|L1|L1PA2	+	chr4	75401194	75423022	AC096759.2|ENST00000507739.5	+	75401194,75422053,75422578	75401292,75422192,75423022	0.900000
SK_N_DZ_cytosolic_fraction	chr14	23636363	23636367	23636363	+	High_confidence	6	6	12	0.330119	3.251629	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636363	23645639	DHRS2|NM_182908.4	+	23636363,23638826,23639178,23639793,23643151,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644554,23644882,23645639	1.000000
SK_N_DZ_cytosolic_fraction	chr1	112877752	112877753	112877752	-	RAMPAGE_only	18	19	19	0.522689	3.836592	chr1	112877443	112877705	LTR|ERVL?|LTR55	-	chr1	112820168	112850643	LINC01356|NR_103746.1	-	112820168,112823652,112825512,112828476,112840487,112848953,112849679	112820541,112823754,112825672,112828511,112840580,112849050,112850643	0.947368
SK_N_DZ_cytosolic_fraction	chr15	66582165	66582166	66582165	+	High_confidence	9	9	9	0.247590	2.947703	chr15	66581970	66582322	LTR|ERVL-MaLR|THE1A	+	chr15	66582189	66685794	LINC01169|ENST00000558797.1	+	66582189,66664361,66668340,66683998,66685269	66582248,66664452,66668454,66684042,66685794	0.555556
SK_N_DZ_cytosolic_fraction	chr14	103712932	103712943	103712932	-	High_confidence	6	7	11	0.302610	3.121928	chr14	103712860	103713310	LTR|ERV1|MER31A	+	chr14	103697617	103712104	XRCC3|ENST00000553264.5	-	103697617,103699132,103699363,103703172,103707002,103708521,103711032,103711465	103699017,103699179,103699576,103703327,103707215,103708659,103711245,103712104	0.909091
SK_N_DZ_cytosolic_fraction	chr10	123350802	123350809	123350808	-	High_confidence	4	4	8	0.220080	2.750000	chr10	123350740	123350906	SINE|MIR|MIR	+	chr10	123332840	123351564	MSTRG.4942.1	-	123332840,123350749	123338217,123351564	0.875000
SK_N_DZ_cytosolic_fraction	chr11	123060156	123060256	123060174	-	High_confidence	25	26	259	7.125079	5.539841	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.725869
SK_N_DZ_cytosolic_fraction	chr13	24968465	24968494	24968471	-	RAMPAGE_only	7	8	31	0.852809	4.237291	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24951387	24967454	TPTE2P1|ENST00000435256.1	-	24951387,24953280,24954772,24959733,24961748,24965499,24967391	24951490,24953344,24954869,24959812,24961854,24965580,24967454	0.548387
SK_N_DZ_cytosolic_fraction	chr11	5505651	5505652	5505651	-	High_confidence	23	23	24	0.660239	3.827910	chr11	5505485	5505844	LTR|ERVL-MaLR|THE1B	-	chr11	5268344	5505652	HBE1|ENST00000292896.3	-	5268344,5269453,5269798,5505568	5268597,5269676,5270156,5505652	0.708333
SK_N_DZ_cytosolic_fraction	chrX	15463084	15463109	15463084	+	RAMPAGE_only	7	7	16	0.440159	3.773557	chrX	15462980	15463358	LTR|ERVL|LTR79	+	chrX	15464245	15556529	BMX|ENST00000357607.6	+	15464245,15508344,15509328,15511436,15516111,15517928,15522345,15525287,15526041,15529972,15531327,15534211,15536352,15537133,15541981,15543070,15546802,15549839,15556072	15464424,15508491,15509433,15511518,15516231,15517993,15522587,15525365,15526095,15530027,15531407,15534339,15536427,15537305,15542198,15543135,15546921,15549997,15556529	0.625000
SK_N_DZ_cytosolic_fraction	chr7	103275146	103275164	103275149	-	RAMPAGE_only	3	3	9	0.247590	2.500000	chr7	103274079	103275487	LTR|ERV1|LTR12C	-	chr7	103175132	103280219	DPY19L2P2|ENST00000439473.5	-	103175132,103184001,103185437,103195439,103197186,103198594,103210266,103212160,103214000,103216462,103225104,103233799,103234648,103237755,103238802,103240561,103242988,103254781,103257603,103271731,103274069,103277613,103279832	103175411,103184127,103185537,103195614,103197306,103198619,103210313,103212232,103214102,103216543,103225164,103233886,103234726,103237855,103238871,103240653,103243046,103254875,103257724,103271869,103275627,103277638,103280219	0.777778
SK_N_DZ_cytosolic_fraction	chr5	12574832	12574857	12574842	+	High_confidence	22	23	96	2.640956	5.234695	chr5	12573943	12575033	LTR|ERV1|LTR12C	-	chr5	12574856	12655687	LINC01194|ENST00000505877.5	+	12574856,12595696,12654646	12575052,12595778,12655687	0.625000
SK_N_DZ_cytosolic_fraction	chr7	2242922	2242923	2242922	+	High_confidence	186	186	187	5.144362	6.366297	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.994652
SK_N_DZ_cytosolic_fraction	chr7	99358774	99358775	99358774	+	High_confidence	8	8	8	0.220080	2.750000	chr7	99358536	99358830	SINE|Alu|AluSp	-	chr7	99358665	99366214	ARPC1A|ENST00000463009.1	+	99358665,99359544,99363542,99365890	99358775,99359738,99363633,99366214	1.000000
SK_N_DZ_cytosolic_fraction	chr1	235330459	235330472	235330459	+	RAMPAGE_only	10	12	26	0.715259	4.323856	chr1	235330202	235330492	SINE|Alu|AluYf1	+	chr1	235329028	235342559	GGPS1|ENST00000497327.1	+	235329028,235335241,235341707,235342010	235329183,235335334,235341778,235342559	0.884615
SK_N_DZ_cytosolic_fraction	chr12	122064332	122064376	122064375	+	RAMPAGE_only	378	386	1018	28.005136	7.483319	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063348	122070517	MSTRG.8660.2	+	122063348,122064138,122064549,122068027,122068288	122063531,122064433,122064682,122068191,122070517	0.700393
SK_N_DZ_cytosolic_fraction	chr3	169812897	169813008	169812903	-	High_confidence	30	31	88	2.420876	5.404016	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.909091
SK_N_DZ_cytosolic_fraction	chr4	173369515	173369534	173369526	-	High_confidence	8	8	33	0.907829	4.478232	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363779	173370446	AC097534.2|ENST00000609153.1	-	173363779,173369433,173370291	173364198,173369610,173370446	0.787879
SK_N_DZ_cytosolic_fraction	chr10	82234161	82234218	82234217	-	RAMPAGE_only	5	5	20	0.550199	3.616349	chr10	82233513	82234263	LINE|L2|L2a	+	chr10	82224212	82229179	AC010157.1|ENST00000440589.2	-	82224212,82225398,82228926	82224359,82225525,82229179	0.750000
SK_N_DZ_cytosolic_fraction	chr9	128921946	128921958	128921957	+	High_confidence	3	3	7	0.192570	2.807355	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.857143
SK_N_DZ_cytosolic_fraction	chr11	134298662	134298665	134298662	+	High_confidence	3	7	10	0.275100	2.947703	chr11	134298467	134298821	LTR|ERVL-MaLR|THE1A	+	chr11	134298678	134319564	MSTRG.6914.6	+	134298678,134318630,134318876	134298745,134318747,134319564	0.700000
SK_N_DZ_cytosolic_fraction	chr15	66502611	66502741	66502611	-	High_confidence	59	60	703	19.339500	6.375325	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.940256
SK_N_DZ_cytosolic_fraction	chr19	12800944	12801038	12800944	-	High_confidence	18	18	123	3.383725	4.877952	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.975610
SK_N_DZ_cytosolic_fraction	chr6	35811195	35811196	35811195	+	RAMPAGE_only	4	4	7	0.192570	2.584963	chr6	35810872	35811224	LTR|ERVL-MaLR|MLT1I	-	chr6	35805397	35824075	LHFPL5|ENST00000645222.1	+	35805397,35814545,35819436,35822981	35806082,35814782,35819463,35824075	0.571429
SK_N_DZ_cytosolic_fraction	chr2	117804163	117804174	117804173	-	High_confidence	3	3	8	0.220080	2.521641	chr2	117803780	117809809	LINE|L1|L1PA3	+	chr2	117757562	117804174	AC009312.1|ENST00000457110.1	-	117757562,117760372,117785529,117804131	117757774,117760591,117785647,117804174	0.625000
SK_N_DZ_cytosolic_fraction	chr22	30971699	30971706	30971705	+	High_confidence	6	6	11	0.302610	3.459432	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.909091
SK_N_DZ_cytosolic_fraction	chr11	74747201	74747250	74747249	+	High_confidence	13	13	46	1.265458	5.016028	chr11	74747182	74747456	SINE|Alu|AluJb	-	chr11	74747226	74842413	MSTRG.6232.1	+	74747226,74789625,74810183,74817595,74834675,74835545	74747308,74789699,74810330,74817714,74834775,74842413	0.913043
SK_N_DZ_cytosolic_fraction	chr12	50766938	50766972	50766971	+	RAMPAGE_only	6	6	22	0.605219	3.845351	chr12	50766664	50767224	LTR|ERV1|MER41-int	+	chr12	50764508	50814368	ATF1|ENST00000552487.1	+	50764508,50780139,50795908,50809455,50814009,50814279	50764647,50780238,50796009,50809589,50814192,50814368	0.863636
SK_N_DZ_cytosolic_fraction	chr14	81170392	81170431	81170412	-	High_confidence	4	6	20	0.550199	4.221928	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.750000
SK_N_DZ_cytosolic_fraction	chr2	241235121	241235148	241235121	-	RAMPAGE_only	4	4	17	0.467669	3.500000	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241229438	241230848	HDLBP|ENST00000484412.1	-	241229438,241229832,241230068,241230758	241229687,241229961,241230269,241230848	0.588235
SK_N_DZ_cytosolic_fraction	chr11	94238091	94238147	94238091	+	High_confidence	4	5	19	0.522689	4.037401	chr11	94232524	94238528	LINE|L1|L1PA2	-	chr11	94238149	94279206	AP002784.1|ENST00000515097.2	+	94238149,94278764	94238277,94279206	0.789474
SK_N_DZ_cytosolic_fraction	chr18	2247612	2247633	2247632	-	RAMPAGE_only	3	3	8	0.220080	2.807355	chr18	2247167	2253196	LINE|L1|L1PA2	+	chr18	2034678	2239880	AP005230.1|ENST00000579097.1	-	2034678,2126199,2131496,2239792	2035147,2126377,2131540,2239880	0.500000
SK_N_DZ_cytosolic_fraction	chr3	125123617	125123618	125123617	-	High_confidence	14	17	18	0.495179	3.852169	chr3	125123512	125123811	LTR|ERVL-MaLR|THE1B	-	chr3	125083142	125123599	SLC12A8|ENST00000465475.5	-	125083142,125107480,125110188,125118768,125120598,125123529	125084052,125108126,125110335,125118856,125120686,125123599	0.666667
SK_N_DZ_cytosolic_fraction	chr7	18173581	18173603	18173602	+	RAMPAGE_only	2	3	7	0.192570	2.584963	chr7	18169457	18175596	LINE|L1|L1PA6	-	chr7	18086948	18666923	HDAC9|ENST00000417496.6	+	18086948,18162228,18458841,18496261,18585280,18590344,18591515,18593907,18634626,18644670,18647784,18648465,18666212	18087213,18162349,18458901,18496324,18585522,18590486,18591642,18594029,18634742,18644793,18647998,18648683,18666923	0.571429
SK_N_DZ_cytosolic_fraction	chr6	26956526	26956585	26956544	-	High_confidence	11	11	67	1.843167	5.603111	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.865672
SK_N_DZ_cytosolic_fraction	chr8	139602069	139602080	139602079	-	High_confidence	2	4	8	0.220080	2.521641	chr8	139601912	139602270	LTR|ERVL-MaLR|MLT1I	-	chr8	139601077	139602064	KCNK9|ENST00000523653.1	-	139601077,139602012	139601601,139602064	0.750000
SK_N_DZ_cytosolic_fraction	chr17	41871691	41871820	41871819	-	RAMPAGE_only	12	13	80	2.200797	5.339063	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.525000
SK_N_DZ_cytosolic_fraction	chr16	58862219	58862228	58862227	-	High_confidence	615	668	1179	32.434239	4.856232	chr16	58862059	58862421	LTR|ERVL-MaLR|THE1B	-	chr16	58847806	58862215	MSTRG.13517.1	-	58847806,58862134	58848153,58862215	0.921968
SK_N_DZ_cytosolic_fraction	chr16	56930837	56930845	56930837	+	RAMPAGE_only	3	4	9	0.247590	2.750000	chr16	56930565	56931042	DNA|hAT-Charlie|Charlie3	-	chr16	56932047	56944863	HERPUD1|ENST00000439977.6	+	56932047,56935234,56935400,56936686,56939236,56939894,56942131,56943125	56932391,56935312,56935475,56936817,56939359,56940245,56942237,56944863	0.555556
SK_N_DZ_cytosolic_fraction	chr12	123272358	123272378	123272362	-	High_confidence	3	4	11	0.302610	3.121928	chr12	123272292	123272359	DNA|hAT-Charlie|Charlie4z	-	chr12	123261275	123272334	CDK2AP1|ENST00000544658.5	-	123261275,123265195,123267184,123272156	123261803,123265322,123267282,123272334	0.636364
SK_N_DZ_cytosolic_fraction	chr12	56157286	56157459	56157286	+	High_confidence	22	22	279	7.675278	5.546419	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.892473
SK_N_DZ_cytosolic_fraction	chr2	15561773	15561836	15561816	+	High_confidence	203	218	893	24.566391	7.518083	chr2	15561671	15561852	LINE|L2|L2c	-	chr2	15561376	15574960	MSTRG.19151.1	+	15561376,15564101,15565064,15573483	15562183,15564274,15565198,15574960	0.727884
SK_N_DZ_cytosolic_fraction	chr8	75324280	75324301	75324300	-	High_confidence	4	4	8	0.220080	3.000000	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223702	75324741	CASC9|ENST00000522183.1	-	75223702,75324564	75224358,75324741	0.500000
SK_N_DZ_cytosolic_fraction	chr11	4127067	4127254	4127253	+	RAMPAGE_only	9	12	103	2.833526	5.519697	chr11	4127295	4127736	LTR|ERVL-MaLR|MLT1D	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.990291
SK_N_DZ_cytosolic_fraction	chr7	68434969	68434987	68434969	-	RAMPAGE_only	4	4	14	0.385139	3.521641	chr7	68434677	68435204	DNA|hAT-Charlie|MER1A	-	chr7	68424372	68424578	MSTRG.31897.1	-	68424372	68424578	0.642857
SK_N_DZ_cytosolic_fraction	chr8	69356952	69356973	69356952	+	High_confidence	18	19	53	1.458028	4.527484	chr8	69351385	69357434	LINE|L1|L1PA3	-	chr8	69356993	69357386	MSTRG.33726.1	+	69356993	69357386	0.660377
SK_N_DZ_cytosolic_fraction	chr1	247905543	247905544	247905543	-	High_confidence	85	88	110	3.026095	5.351144	chr1	247905434	247905895	LTR|ERV1|LTR2	-	chr1	247898417	247905575	MSTRG.3477.1	-	247898417,247905190	247902952,247905575	0.609091
SK_N_DZ_cytosolic_fraction	chr7	103353924	103353931	103353930	+	High_confidence	6	7	11	0.302610	2.921928	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.545455
SK_N_DZ_cytosolic_fraction	chrX	16712889	16712959	16712889	-	High_confidence	33	38	182	5.006812	6.326580	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.967033
SK_N_DZ_cytosolic_fraction	chr3	98503808	98503828	98503808	-	RAMPAGE_only	15	15	47	1.292968	4.095431	chr3	98503606	98503968	LTR|ERVL-MaLR|THE1B	-	chr3	98500839	98522922	CLDND1|ENST00000507874.5	-	98500839,98517051,98518884,98521132,98521652,98522848	98501520,98517189,98518995,98521442,98521718,98522922	0.936170
SK_N_DZ_cytosolic_fraction	chr1	42959478	42959486	42959478	+	High_confidence	2	2	7	0.192570	2.807355	chr1	42959490	42959595	LINE|L2|L2c	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.714286
SK_N_DZ_cytosolic_fraction	chr19	32787614	32787629	32787626	+	RAMPAGE_only	6	6	18	0.495179	3.683542	chr19	32781967	32788071	LINE|L1|L1PA7	-	chr19	32720012	32827414	TDRD12|ENST00000647536.1	+	32720012,32731724,32738855,32742780,32748475,32749783,32755991,32757037,32772752,32773455,32777148,32790530,32790963,32794627,32797734,32798307,32800166,32800643,32801755,32802655,32802921,32807533,32810092,32811209,32813683,32815447,32818088,32821032,32826097,32826243,32826444,32826682,32827163	32720096,32731883,32738992,32742900,32748531,32749869,32756181,32757130,32772850,32773532,32777229,32790591,32791068,32794813,32797891,32798435,32800358,32800772,32801873,32802789,32803142,32807648,32810277,32811420,32813776,32815620,32818157,32821139,32826161,32826357,32826598,32826749,32827414	0.722222
SK_N_DZ_cytosolic_fraction	chr7	42960987	42961029	42961004	-	RAMPAGE_only	15	22	83	2.283326	4.691160	chr7	42960777	42961015	LTR|ERV1|HERV35I-int	-	chr7	42954134	42963343	AC005537.1|ENST00000588324.1	-	42954134,42955376,42955954,42959928,42961338,42962967	42954485,42955457,42956132,42959990,42961528,42963343	0.915663
SK_N_DZ_cytosolic_fraction	chr14	88831392	88831393	88831392	+	High_confidence	234	234	237	6.519860	6.395222	chr14	88831031	88831570	LTR|ERV1|MER66C	+	chr14	88830698	88853034	MSTRG.10517.17	+	88830698,88839451,88840864,88841036,88841424,88843805,88852970	88831647,88839572,88840928,88841196,88841514,88843850,88853034	0.949367
SK_N_DZ_cytosolic_fraction	chr1	235109763	235110253	235109898	-	RAMPAGE_only	34	35	603	16.588504	5.767648	chr1	235109784	235110109	DNA|TcMar-Tigger|Tigger10	-	chr1	235109335	235128921	MSTRG.3301.1	-	235109335,235111740,235113767,235119817,235122325,235128594	235111703,235112108,235113910,235119899,235122372,235128921	1.000000
SK_N_DZ_cytosolic_fraction	chr14	57112666	57112677	57112676	-	High_confidence	7	7	14	0.385139	2.507380	chr14	57112210	57118214	LINE|L1|L1PA2	+	chr14	57067007	57112660	AL391152.1|ENST00000551408.2	-	57067007,57112194	57067165,57112660	0.571429
SK_N_DZ_cytosolic_fraction	chr5	147382883	147382900	147382899	+	High_confidence	22	23	93	2.558426	5.677000	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.645161
SK_N_DZ_cytosolic_fraction	chr6	140898419	140898430	140898421	-	High_confidence	82	127	270	7.427688	6.113148	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140898418	MSTRG.30855.2	-	140845957,140852818,140898187,140898380	140846304,140852912,140898290,140898418	0.714815
SK_N_DZ_cytosolic_fraction	chr10	123350854	123350855	123350854	-	High_confidence	12	13	18	0.495179	3.683542	chr10	123350740	123350906	SINE|MIR|MIR	+	chr10	123332840	123351564	MSTRG.4942.1	-	123332840,123350749	123338217,123351564	0.888889
SK_N_DZ_cytosolic_fraction	chr5	140700445	140700457	140700445	+	High_confidence	1575	2367	5100	140.300780	4.918292	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.981765
SK_N_DZ_cytosolic_fraction	chr6	34998724	34998725	34998724	+	RAMPAGE_only	6	6	6	0.165060	2.584963	chr6	34998360	34998835	LTR|ERV1|LTR2B	+	chr6	34889264	35088963	ANKS1A|ENST00000649117.1	+	34889264,34967238,34970009,34972580,34981689,34982751,34983112,34983323,34985081,34989223,34994301,35017472,35054098,35060146,35078557,35079515,35079820,35080993,35082690,35083154,35083416,35084120,35085765,35086269,35086951	34889599,34967319,34970166,34972643,34981986,34982827,34983214,34983425,34985278,34989316,34994422,35018059,35054165,35060253,35078656,35079668,35079928,35081158,35082816,35083226,35083503,35084258,35085936,35086368,35088963	0.833333
SK_N_DZ_cytosolic_fraction	chr22	50330653	50330675	50330653	+	RAMPAGE_only	8	8	43	1.182928	4.318091	chr22	50330424	50330745	SINE|Alu|AluY	+	chr22	50343303	50445090	PPP6R2|ENST00000359139.7	+	50343303,50372019,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439697,50439960,50440821,50443865,50444202	50343550,50372150,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50445090	0.581395
SK_N_DZ_cytosolic_fraction	chr22	42090064	42090087	42090064	-	High_confidence	2	2	9	0.247590	2.750000	chr22	42089931	42090197	SINE|Alu|AluY	+	chr22	42089629	42090028	AL021878.2|ENST00000602718.1	-	42089629	42090028	0.555556
SK_N_DZ_cytosolic_fraction	chr6	63805796	63805797	63805796	+	High_confidence	54	58	63	1.733127	5.446971	chr6	63805602	63805978	LTR|ERVL-MaLR|THE1D	+	chr6	63805760	63823277	MSTRG.30257.1	+	63805760,63821239	63805896,63823277	0.809524
SK_N_DZ_cytosolic_fraction	chrX	75188557	75188584	75188583	+	RAMPAGE_only	31	31	61	1.678107	5.548394	chrX	75183022	75189043	LINE|L1|L1PA5	-	chrX	75274058	75304897	UPRT|NM_001307944.1	+	75274058,75293471,75296341,75297490,75299734,75300866,75303404	75274640,75293514,75296411,75297553,75299896,75301015,75304897	0.704918
SK_N_DZ_cytosolic_fraction	chr2	180692008	180692009	180692008	+	High_confidence	44	45	45	1.237948	4.644107	chr2	180691204	180692425	LTR|ERV1|LTR12C	+	chr2	180692103	180916939	SCHLAP1|NR_104322.1	+	180692103,180724595,180725190,180823932,180827240,180899649,180916272	180692441,180724690,180725291,180824070,180827507,180899718,180916939	0.955556
SK_N_DZ_cytosolic_fraction	chr19	663424	663436	663435	+	High_confidence	3	3	10	0.275100	2.646439	chr19	663474	663667	LINE|L2|L2a	+	chr19	663481	669500	AC004156.1|ENST00000591866.2	+	663481,667211	664511,669500	1.000000
SK_N_DZ_cytosolic_fraction	chr15	99401309	99401330	99401329	-	RAMPAGE_only	6	7	11	0.302610	2.921928	chr15	99401166	99401522	LTR|ERVL-MaLR|THE1B	-	chr15	99395178	99396593	LINC02244|ENST00000561362.1	-	99395178,99396485	99395393,99396593	0.727273
SK_N_DZ_cytosolic_fraction	chr5	34918370	34918407	34918370	+	RAMPAGE_only	8	10	28	0.770279	4.450212	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	0.857143
SK_N_DZ_cytosolic_fraction	chr1	22428847	22428871	22428847	+	High_confidence	3	3	14	0.385139	3.546594	chr1	22428699	22428944	LTR|ERVL-MaLR|MLT1J	+	chr1	22428837	22511763	ZBTB40|ENST00000650433.1	+	22428837,22489879,22491399,22506048,22508000,22508529,22509099,22511178,22511675	22429014,22490645,22491533,22506241,22508137,22508731,22509233,22511347,22511763	0.928571
SK_N_DZ_cytosolic_fraction	chr7	74568817	74568850	74568837	+	RAMPAGE_only	2	2	9	0.247590	3.000000	chr7	74568749	74569022	LINE|L2|L2	-	chr7	74600959	74602583	GTF2IRD1|ENST00000486086.1	+	74600959,74602364	74601180,74602583	0.666667
SK_N_DZ_cytosolic_fraction	chr3	151539250	151539271	151539250	-	RAMPAGE_only	3	5	20	0.550199	3.984184	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.950000
SK_N_DZ_cytosolic_fraction	chr3	13479994	13480053	13480041	-	High_confidence	8	8	24	0.660239	4.186704	chr3	13479881	13479998	SINE|MIR|MIR3	-	chr3	13476981	13480053	HDAC11-AS1|ENST00000424112.2	-	13476981,13479642	13477085,13480053	0.500000
SK_N_DZ_cytosolic_fraction	chr21	42524962	42524976	42524962	+	RAMPAGE_only	2	2	7	0.192570	2.807355	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42513913	42581440	SLC37A1|ENST00000352133.2	+	42513913,42518276,42525775,42534697,42535471,42539511,42542403,42543435,42547102,42554061,42558957,42562077,42563814,42564707,42565826,42566984,42568359,42574817,42579735,42580344	42514717,42518510,42525857,42534830,42535550,42539647,42542480,42543602,42547140,42554142,42559089,42562168,42563877,42564793,42565875,42567058,42568438,42574915,42579800,42581440	0.571429
SK_N_DZ_cytosolic_fraction	chr2	241808879	241808897	241808879	+	High_confidence	2	2	7	0.192570	2.584963	chr2	241808863	241808907	LINE|L1|L1MEj	+	chr2	241808824	241817413	NEU4|ENST00000407683.5	+	241808824,241814481,241814891,241816050	241809274,241814685,241815147,241817413	0.857143
SK_N_DZ_cytosolic_fraction	chr11	93734869	93734879	93734869	-	High_confidence	2	2	8	0.220080	2.807355	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730282	93734661	TAF1D|ENST00000525928.5	-	93730282,93730676,93731149,93731752,93732243,93733086,93733349	93730447,93730712,93731216,93731799,93732291,93733121,93734661	0.750000
SK_N_DZ_cytosolic_fraction	chr1	176055477	176055531	176055530	-	High_confidence	6	7	23	0.632729	4.142915	chr1	176055460	176055760	LINE|L2|L2	+	chr1	175944852	176055504	MSTRG.2693.6	-	175944852,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176055079	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176055504	0.956522
SK_N_DZ_cytosolic_fraction	chr11	93735039	93735085	93735084	-	High_confidence	6	6	15	0.412649	3.664498	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730353	93735238	TAF1D|ENST00000529435.5	-	93730353,93730676,93731149,93731752,93732243,93733086,93733349,93734624	93730447,93730712,93731216,93731799,93732291,93733121,93733419,93735238	0.800000
SK_N_DZ_cytosolic_fraction	chr5	97089019	97089056	97089055	+	High_confidence	2	2	8	0.220080	3.000000	chr5	97088919	97089287	LTR|ERVL-MaLR|THE1B	+	chr5	97089074	97437217	LIX1-AS1|ENST00000504578.2	+	97089074,97101758,97103025,97183007,97183504,97431743,97436552	97089204,97102132,97103094,97183240,97183669,97431900,97437217	1.000000
SK_N_DZ_cytosolic_fraction	chr13	30257896	30257945	30257944	-	RAMPAGE_only	2	2	13	0.357629	3.418296	chr13	30257280	30258056	LINE|RTE-BovB|MamRTE1	-	chr13	30202629	30307021	MSTRG.9010.2	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30306678	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307021	0.692308
SK_N_DZ_cytosolic_fraction	chr7	99410041	99410057	99410056	+	RAMPAGE_only	8	8	21	0.577709	4.037401	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.857143
SK_N_DZ_cytosolic_fraction	chr8	17890777	17890793	17890792	-	RAMPAGE_only	2	3	8	0.220080	2.807355	chr8	17890609	17890983	LTR|ERVL-MaLR|THE1C	-	chr8	17864583	17891809	FGL1|ENST00000518650.5	-	17864583,17868547,17868915,17874018,17874361,17881998,17885491,17891680	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891809	0.875000
SK_N_DZ_cytosolic_fraction	chr19	9561393	9561474	9561430	-	RAMPAGE_only	2	3	14	0.385139	3.807355	chr19	9560895	9561604	LINE|L1|L1MC4a	+	chr19	9560352	9584497	ZNF121|ENST00000586602.5	-	9560352,9567647,9568094,9569001,9584185,9584460	9567109,9567705,9568175,9569082,9584348,9584497	1.000000
SK_N_DZ_cytosolic_fraction	chr17	29643374	29643378	29643377	-	RAMPAGE_only	7	9	14	0.385139	3.521641	chr17	29643278	29643403	LTR|ERVL-MaLR|MLT1L	+	chr17	29630799	29761417	SSH2|ENST00000649863.1	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677738,29684684,29695523,29703062,29761417	0.785714
SK_N_DZ_cytosolic_fraction	chr1	180558963	180558964	180558963	+	High_confidence	7	7	8	0.220080	2.807355	chr1	180558768	180559133	LTR|ERVL-MaLR|THE1A	+	chr1	180558973	180566518	OVAAL|NR_125716.1	+	180558973,180562203,180565250	180559055,180562344,180566518	0.750000
SK_N_DZ_cytosolic_fraction	chr8	15417190	15417191	15417190	+	High_confidence	6	6	8	0.220080	2.807355	chr8	15417004	15417387	LTR|ERVL-MaLR|MSTA	+	chr8	15417214	15673836	TUSC3|ENST00000503191.5	+	15417214,15483385,15623079,15659506,15662155,15673746	15417305,15483483,15623249,15659647,15662296,15673836	0.500000
SK_N_DZ_cytosolic_fraction	chr1	10425607	10425616	10425615	+	RAMPAGE_only	37	37	59	1.623087	5.534621	chr1	10425394	10425655	LTR|ERVK|LTR5_Hs	+	chr1	10430101	10452003	APITD1-CORT|NM_001270517.1	+	10430101,10433841,10434656,10440346,10442264,10451376	10430568,10433965,10434690,10440413,10442441,10452003	0.830508
SK_N_DZ_cytosolic_fraction	chr8	17895492	17895515	17895512	-	High_confidence	2	3	10	0.275100	3.169925	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.900000
SK_N_DZ_cytosolic_fraction	chr15	91022618	91022743	91022722	+	High_confidence	13	15	45	1.237948	4.861530	chr15	91022701	91022863	SINE|Alu|AluSx3	+	chr15	91022765	91023200	AC068831.6|ENST00000620171.1	+	91022765	91023200	0.622222
SK_N_DZ_cytosolic_fraction	chrX	103919492	103919517	103919510	-	High_confidence	3	3	15	0.412649	3.521641	chrX	103919452	103919627	SINE|MIR|MIRb	-	chrX	103917410	103919548	TMSB15B-AS1|ENST00000614615.1	-	103917410,103918408,103918831,103919424	103918225,103918460,103919080,103919548	0.666667
SK_N_DZ_cytosolic_fraction	chr12	85317994	85318073	85318072	+	High_confidence	50	53	375	10.316234	7.801757	chr12	85312419	85318459	LINE|L1|L1PA2	-	chr12	85318059	85713281	MSTRG.8155.2	+	85318059,85342471,85353204,85354991,85399492,85424117,85702880,85713260	85318115,85342719,85353265,85355059,85399610,85424204,85703004,85713281	0.554667
SK_N_DZ_cytosolic_fraction	chr6	43025266	43025308	43025307	+	High_confidence	5	5	13	0.357629	3.700440	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.769231
SK_N_DZ_cytosolic_fraction	chr7	44122886	44122887	44122886	-	High_confidence	8	8	8	0.220080	3.000000	chr7	44122555	44122975	LINE|L2|L2a	+	chr7	44117618	44123029	POLD2|ENST00000456038.5	-	44117618,44117942,44121833,44122886	44117742,44118064,44122109,44123029	0.875000
SK_N_DZ_cytosolic_fraction	chr6	16899767	16899770	16899767	+	High_confidence	106	107	223	6.134720	6.305520	chr6	16899579	16899922	LTR|ERVL-MaLR|THE1D	+	chr6	16899744	16908447	MSTRG.29538.2	+	16899744,16903016,16905092	16899840,16903253,16908447	0.753363
SK_N_DZ_cytosolic_fraction	chr1	116390241	116390281	116390280	+	RAMPAGE_only	4	4	15	0.412649	2.606239	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
SK_N_DZ_cytosolic_fraction	chr14	46063951	46063965	46063960	-	High_confidence	125	141	338	9.298365	4.806765	chr14	46063782	46064404	LTR|ERV1|LTR9	-	chr14	46061699	46063975	MSTRG.9938.1	-	46061699,46063767	46061950,46063975	0.961538
SK_N_DZ_cytosolic_fraction	chr4	75127183	75127207	75127193	-	RAMPAGE_only	8	8	29	0.797789	3.967720	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.965517
SK_N_DZ_cytosolic_fraction	chr2	218287279	218287306	218287279	-	High_confidence	9	9	22	0.605219	4.186704	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.772727
SK_N_DZ_cytosolic_fraction	chr22	41731864	41731874	41731864	+	RAMPAGE_only	4	4	8	0.220080	2.750000	chr22	41731692	41731971	LINE|L2|L2c	-	chr22	41699513	41799455	MEI1|NM_152513.3	+	41699513,41703330,41705503,41714001,41716040,41718070,41723942,41729664,41730520,41732244,41732468,41743079,41744972,41745884,41748106,41752590,41753948,41758364,41763173,41770685,41776101,41778707,41781283,41781684,41784338,41784607,41793828,41794370,41795410,41795734,41799253	41699712,41703454,41705554,41714075,41716146,41718274,41724073,41729779,41730637,41732344,41732603,41743194,41745064,41746026,41748218,41752651,41754046,41758533,41763321,41770961,41776267,41778812,41781394,41781845,41784420,41784783,41793910,41794477,41795542,41795847,41799455	0.750000
SK_N_DZ_cytosolic_fraction	chr8	140087918	140087941	140087940	-	RAMPAGE_only	6	9	24	0.660239	4.061482	chr8	140086947	140088309	LINE|L2|L2b	+	chr8	139732161	140082153	TRAPPC9|ENST00000523777.5	-	139732161,139885878,139910146,139988725,140023936,140081988	139732202,139885969,139910300,139988836,140024079,140082153	0.708333
SK_N_DZ_cytosolic_fraction	chr17	50834727	50834761	50834735	+	High_confidence	3	3	15	0.412649	3.640224	chr17	50834717	50834860	SINE|MIR|MIRc	+	chr17	50834649	50841308	WFIKKN2|ENST00000426127.1	+	50834649,50839498	50835032,50841308	0.866667
SK_N_DZ_cytosolic_fraction	chr5	92199106	92199117	92199106	+	High_confidence	4	4	10	0.275100	3.321928	chr5	92193473	92199495	LINE|L1|L1PA2	-	chr5	92199536	92406644	AC114316.2|ENST00000502934.1	+	92199536,92204604,92305479,92400917,92404159	92199628,92204684,92305635,92401061,92406644	0.600000
SK_N_DZ_cytosolic_fraction	chr14	46064131	46064156	46064150	+	High_confidence	90	92	159	4.374083	6.122619	chr14	46063782	46064404	LTR|ERV1|LTR9	-	chr14	46064158	46501903	LINC00871|NR_102701.1	+	46064158,46210823,46211746,46438180,46449907,46501306	46064216,46210939,46211804,46438250,46449954,46501903	0.635220
SK_N_DZ_cytosolic_fraction	chr16	67571156	67571215	67571156	+	High_confidence	2	2	12	0.330119	3.022055	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	1.000000
SK_N_DZ_cytosolic_fraction	chr9	104116257	104116291	104116290	+	RAMPAGE_only	2	3	13	0.357629	3.418296	chr9	104116275	104116318	DNA|hAT-Charlie|MER5A	+	chr9	104101957	104139652	MSTRG.35363.7	+	104101957,104102423,104111580,104113315,104113963,104114690,104116199,104118170,104120026,104123107,104124911,104126640,104127285,104129644,104132008,104134414,104135867,104138017,104139138	104102193,104102573,104111814,104113475,104114081,104114829,104116319,104118375,104120162,104123232,104125105,104126784,104127480,104129845,104132125,104134575,104136060,104138165,104139652	0.923077
SK_N_DZ_cytosolic_fraction	chr8	74350017	74350051	74350017	-	High_confidence	5	6	15	0.412649	3.773557	chr8	74349865	74349977	LINE|L1|L1MC4	-	chr8	74347756	74350050	AC103952.1|ENST00000521872.1	-	74347756,74349909	74348205,74350050	0.866667
SK_N_DZ_cytosolic_fraction	chr18	46087012	46087065	46087012	-	High_confidence	3	3	20	0.550199	4.142664	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.650000
SK_N_DZ_cytosolic_fraction	chr2	200887970	200888000	200887970	-	High_confidence	2	2	9	0.247590	2.947703	chr2	200887775	200888074	SINE|Alu|AluSx1	+	chr2	200871151	200887687	PPIL3|ENST00000415562.5	-	200871151,200876918,200881420,200882341,200885697,200887612	200871521,200877037,200881488,200882382,200885772,200887687	0.777778
SK_N_DZ_cytosolic_fraction	chr13	30257748	30257783	30257782	-	RAMPAGE_only	2	2	6	0.165060	2.584963	chr13	30257280	30258056	LINE|RTE-BovB|MamRTE1	-	chr13	30202629	30307021	MSTRG.9010.2	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30306678	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307021	0.500000
SK_N_DZ_cytosolic_fraction	chr1	159005961	159005962	159005961	+	High_confidence	18	19	26	0.715259	4.418296	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.884615
SK_N_DZ_cytosolic_fraction	chr1	39026790	39026811	39026790	+	High_confidence	4	4	10	0.275100	2.921928	chr1	39026635	39026832	LINE|L2|L2	+	chr1	39026317	39034636	NDUFS5|ENST00000372967.3	+	39026317,39028722,39034391	39026398,39028940,39034636	1.000000
SK_N_DZ_cytosolic_fraction	chr15	78708146	78708153	78708146	-	RAMPAGE_only	3	3	7	0.192570	2.584963	chr15	78707909	78708325	LTR|ERVL-MaLR|MLT1A1	-	chr15	78692577	78727754	CHRNB4|ENST00000558216.1	-	78692577,78707987,78727611	78692894,78708105,78727754	0.857143
SK_N_DZ_cytosolic_fraction	chr12	132955113	132955114	132955113	-	High_confidence	5	5	8	0.220080	2.521641	chr12	132955037	132955650	LTR|ERV1|MER92B	-	chr12	132941753	132955886	MSTRG.8852.47	-	132941753,132945620,132955761	132943022,132945797,132955886	0.625000
SK_N_DZ_cytosolic_fraction	chr8	17692225	17692259	17692258	-	High_confidence	39	39	188	5.171872	6.820306	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.776596
SK_N_DZ_cytosolic_fraction	chr7	39013317	39013321	39013317	+	High_confidence	3	3	8	0.220080	2.521641	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.875000
SK_N_DZ_cytosolic_fraction	chr7	99471746	99471768	99471746	-	High_confidence	4	4	23	0.632729	3.849224	chr7	99471609	99471877	SINE|Alu|AluSx1	+	chr7	99458196	99471762	MSTRG.32248.15	-	99458196,99459146,99460085,99466128,99470200,99471542	99458355,99459263,99460193,99466324,99470324,99471762	0.869565
SK_N_DZ_cytosolic_fraction	chr11	17282914	17282915	17282914	+	RAMPAGE_only	9	9	11	0.302610	3.321928	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.818182
SK_N_DZ_cytosolic_fraction	chr8	98045621	98045663	98045655	+	High_confidence	8	8	58	1.595577	5.452640	chr8	98045692	98046014	SINE|Alu|AluJb	+	chr8	98045650	98047593	MSTRG.34031.1	+	98045650	98047593	1.000000
SK_N_DZ_cytosolic_fraction	chr12	51418125	51418158	51418144	+	RAMPAGE_only	113	136	396	10.893943	7.026082	chr12	51418065	51418366	LINE|CR1|L3	+	chr12	51420099	51453586	SLC4A8|ENST00000548352.5	+	51420099,51440707,51450875,51452123,51453538	51420208,51440789,51451022,51452259,51453586	0.580808
SK_N_DZ_cytosolic_fraction	chr18	80148048	80148049	80148048	+	High_confidence	60	60	70	1.925697	5.564858	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.585714
SK_N_DZ_cytosolic_fraction	chr19	56313362	56313363	56313362	-	RAMPAGE_only	6	6	7	0.192570	2.584963	chr19	56313201	56313542	LTR|ERVL-MaLR|THE1B	-	chr19	56221302	56314564	ZSCAN5A|NM_001322075.1	-	56221302,56222590,56223630,56224662,56313282,56314249	56222323,56222741,56223834,56225173,56313384,56314564	0.571429
SK_N_DZ_cytosolic_fraction	chr7	18708043	18708078	18708058	+	RAMPAGE_only	7	7	34	0.935339	4.369707	chr7	18707909	18708723	LINE|L2|L2c	-	chr7	18496302	18835649	HDAC9|ENST00000523867.5	+	18496302,18585280,18590344,18591515,18593907,18629349,18634626,18644670,18647784,18648465,18666212,18727579,18749004,18762156,18767105,18793344,18829160,18829460,18835466	18496324,18585522,18590486,18591642,18594029,18629481,18634742,18644793,18647998,18648683,18666476,18727757,18749138,18762277,18767155,18793452,18829216,18829548,18835649	0.705882
SK_N_DZ_cytosolic_fraction	chr17	76048339	76048354	76048349	-	RAMPAGE_only	7	7	22	0.605219	4.186704	chr17	76048343	76048804	LTR|ERVL-MaLR|MLT1D	+	chr17	76044753	76049647	SRP68|ENST00000588736.1	-	76044753,76046037,76047905	76045386,76046194,76049647	0.863636
SK_N_DZ_cytosolic_fraction	chr4	4461960	4462005	4461960	-	High_confidence	34	36	105	2.888545	6.014951	chr4	4461848	4462205	LTR|ERVL|LTR79	+	chr4	4425160	4461954	STX18|ENST00000512195.5	-	4425160,4434769,4438393,4457190,4457422,4459371,4461905	4425222,4434858,4438509,4457257,4457500,4459487,4461954	0.780952
SK_N_DZ_cytosolic_fraction	chr7	39013088	39013109	39013108	+	High_confidence	13	15	30	0.825299	4.240224	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.900000
SK_N_DZ_cytosolic_fraction	chr2	68064135	68064150	68064149	-	RAMPAGE_only	6	6	12	0.330119	3.277613	chr2	68063790	68069896	LINE|L1|L1PA5	+	chr2	68042199	68063027	C1D|NM_173177.2	-	68042199,68045987,68046343,68047172,68062957	68043053,68046043,68046410,68047319,68063027	0.500000
SK_N_DZ_cytosolic_fraction	chr7	10973327	10973336	10973335	+	High_confidence	112	112	204	5.612031	6.008270	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.901961
SK_N_DZ_cytosolic_fraction	chr8	17910367	17910378	17910377	-	High_confidence	25	27	58	1.595577	5.329589	chr8	17908095	17912373	LTR|ERVK|HERVK-int	-	chr8	17903934	17910386	MSTRG.33245.12	-	17903934,17909706	17904003,17910386	0.913793
SK_N_DZ_cytosolic_fraction	chr20	52204275	52204310	52204309	-	High_confidence	2	3	7	0.192570	2.807355	chr20	52204307	52204429	LTR|ERVL-MaLR|MLT1J	-	chr20	52160260	52204308	ZFP64|ENST00000461898.1	-	52160260,52164694,52165863,52186831,52204195	52160374,52164757,52166025,52187071,52204308	0.857143
SK_N_DZ_cytosolic_fraction	chr12	54187904	54187905	54187904	-	High_confidence	16	16	17	0.467669	3.452820	chr12	54187852	54187993	LINE|L2|L2c	-	chr12	54181452	54188607	SMUG1|ENST00000506595.5	-	54181452,54182503,54183655,54188514	54181647,54182623,54183959,54188607	0.588235
SK_N_DZ_cytosolic_fraction	chr12	31119312	31119340	31119317	-	High_confidence	5	8	26	0.715259	4.403856	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	MSTRG.7398.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118048	31112288,31113083,31114464,31114927,31116469,31117653,31119110	0.961538
SK_N_DZ_cytosolic_fraction	chr15	75626304	75626305	75626304	-	High_confidence	6	6	7	0.192570	2.584963	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.857143
SK_N_DZ_cytosolic_fraction	chr20	3795750	3795789	3795788	+	High_confidence	19	19	117	3.218665	5.672393	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.974359
SK_N_DZ_cytosolic_fraction	chr16	396837	396853	396848	+	High_confidence	5	5	12	0.330119	3.251629	chr16	396818	396940	SINE|Alu|AluJb	-	chr16	396754	400754	NME4|NM_001286436.1	+	396754,398989,399378,399626,400218	397079,399123,399480,399739,400754	1.000000
SK_N_DZ_cytosolic_fraction	chr11	7465834	7465835	7465834	-	High_confidence	7	7	7	0.192570	2.521641	chr11	7465676	7466033	LTR|ERVL-MaLR|THE1A	-	chr11	7437626	7465835	LOC100506258|NR_103855.1	-	7437626,7450372,7457795,7461238,7465752	7441719,7450442,7457959,7461336,7465835	0.714286
SK_N_DZ_cytosolic_fraction	chr22	50757212	50757248	50757247	+	High_confidence	11	12	41	1.127908	4.611949	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.853659
SK_N_DZ_cytosolic_fraction	chr16	4355592	4355593	4355592	-	High_confidence	1370	1393	1395	38.376390	5.239944	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.969892
SK_N_DZ_cytosolic_fraction	chr3	128432285	128432313	128432285	+	High_confidence	5	5	26	0.715259	4.623517	chr3	128431714	128432547	LINE|L2|L2a	-	chr3	128432157	128434897	MSTRG.25217.1	+	128432157,128434078	128432367,128434897	0.961538
SK_N_DZ_cytosolic_fraction	chr8	39752805	39752815	39752814	+	High_confidence	3	4	8	0.220080	2.807355	chr8	39752658	39752984	LTR|ERVL-MaLR|THE1B	+	chr8	39753271	39754362	MSTRG.33542.1	+	39753271	39754362	0.625000
SK_N_DZ_cytosolic_fraction	chr20	34546843	34546866	34546858	+	High_confidence	10	11	35	0.962848	4.957854	chr20	34546707	34546884	LTR|ERVL-MaLR|MLT1J	-	chr20	34546853	34560345	MAP1LC3A|ENST00000374837.7	+	34546853,34549904,34559207,34559346,34559735	34546916,34550029,34559263,34559453,34560345	0.657143
SK_N_DZ_cytosolic_fraction	chr6	63817314	63817334	63817329	+	High_confidence	52	84	265	7.290139	6.498987	chr6	63817219	63817643	LTR|ERVL|LTR33A	-	chr6	63817311	63823277	MSTRG.30257.5	+	63817311,63821239	63817446,63823277	0.954717
SK_N_DZ_cytosolic_fraction	chr2	153872174	153872201	153872200	+	High_confidence	5	5	25	0.687749	4.303509	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.960000
SK_N_DZ_cytosolic_fraction	chr19	51354809	51354842	51354841	-	High_confidence	5	5	14	0.385139	3.334679	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.928571
SK_N_DZ_cytosolic_fraction	chr3	130548657	130548663	130548662	+	High_confidence	10	16	27	0.742769	4.250827	chr3	130548092	130549017	LINE|L1|L1MC4	-	chr3	130548680	130678155	MSTRG.25303.1	+	130548680,130560123,130560333,130563067,130564993,130566701,130568046,130570817,130573955,130581560,130581989,130586505,130589089,130591040,130592540,130592695,130593060,130593198,130594280,130598364,130599756,130606930,130608901,130610648,130621820,130626484,130627318,130634589,130635698,130641651,130642831,130642986,130644990,130649068,130658675,130661636,130665002,130675201	130548838,130560202,130560428,130563664,130565614,130567262,130568604,130571393,130574525,130581904,130582068,130586660,130589182,130591094,130592612,130592722,130593105,130593252,130594343,130598430,130599810,130606966,130608964,130610711,130621883,130626547,130627369,130634625,130635761,130641714,130642867,130643023,130645002,130649562,130658772,130662308,130665096,130678155	0.962963
SK_N_DZ_cytosolic_fraction	chr18	12419877	12419942	12419903	+	High_confidence	30	39	150	4.126494	6.573941	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12419891	12432940	MSTRG.16413.6	+	12419891,12420324,12421539,12427040,12427220,12429349,12431149,12432854	12419947,12420493,12421629,12427111,12427323,12429436,12431456,12432940	0.813333
SK_N_DZ_cytosolic_fraction	chrX	283480	283509	283508	+	High_confidence	8	17	26	0.715259	4.546594	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.692308
SK_N_DZ_cytosolic_fraction	chr7	8286469	8286470	8286469	+	RAMPAGE_only	5	5	8	0.220080	2.521641	chr7	8286436	8286724	SINE|Alu|AluSz6	-	chr7	8262263	8344516	AC007128.1|ENST00000424460.1	+	8262263,8262579,8264590,8340382,8341016,8343124,8343706	8262419,8262826,8264680,8340556,8341226,8343290,8344516	0.750000
SK_N_DZ_cytosolic_fraction	chr20	50172544	50172595	50172566	+	High_confidence	22	22	136	3.741354	6.058987	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.801471
SK_N_DZ_cytosolic_fraction	chr11	34692395	34692464	34692422	+	High_confidence	11	11	55	1.513048	5.231093	chr11	34691292	34692830	LINE|L1|L1PA2	-	chr11	34692603	34727136	MSTRG.5531.1	+	34692603,34709270,34714693,34715056,34727063	34692889,34709820,34714753,34715234,34727136	0.600000
SK_N_DZ_cytosolic_fraction	chr13	87811254	87811266	87811254	-	High_confidence	5	6	13	0.357629	3.584963	chr13	87810512	87811351	LTR|ERV1|LTR1A2	-	chr13	87807633	87811232	AL445647.1|ENST00000606221.1	-	87807633	87811232	0.846154
SK_N_DZ_cytosolic_fraction	chr2	153871888	153871947	153871921	+	High_confidence	8	8	29	0.797789	4.651084	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.931034
SK_N_DZ_cytosolic_fraction	chr17	82081601	82081710	82081606	-	High_confidence	7	7	47	1.292968	4.970573	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079006	82080695	FASN|ENST00000578424.2	-	82079006,82079356,82080139,82080369	82079280,82079608,82080238,82080695	0.510638
SK_N_DZ_cytosolic_fraction	chr8	17891442	17891446	17891445	-	High_confidence	9	9	18	0.495179	3.616875	chr8	17891176	17891626	LTR|ERVL-MaLR|MLT1C	-	chr8	17864583	17891809	FGL1|ENST00000518650.5	-	17864583,17868547,17868915,17874018,17874361,17881998,17885491,17891680	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891809	0.888889
SK_N_DZ_cytosolic_fraction	chr1	156368005	156368015	156368009	+	High_confidence	17	20	49	1.347988	5.354406	chr1	156367719	156368094	LINE|L2|L2c	+	chr1	156367984	156385219	MSTRG.2426.1	+	156367984,156369318,156371181,156377300,156377989,156378251,156381346,156381805,156382067,156382747,156384526,156384776	156368071,156369436,156371254,156377487,156378140,156378399,156381513,156381943,156382201,156382869,156384600,156385219	0.673469
SK_N_DZ_cytosolic_fraction	chr11	61498966	61498976	61498974	+	High_confidence	8	10	16	0.440159	3.750000	chr11	61498710	61499086	LTR|ERVL-MaLR|MLT1N2	-	chr11	61499166	61506648	MSTRG.5788.3	+	61499166,61499762,61505761	61499327,61499835,61506648	0.937500
SK_N_DZ_cytosolic_fraction	chr14	100829523	100829556	100829555	+	High_confidence	5	6	14	0.385139	3.521641	chr14	100829596	100829639	LINE|L2|L2b	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.928571
SK_N_DZ_cytosolic_fraction	chr12	113773650	113773686	113773650	-	High_confidence	337	388	825	22.695714	7.222135	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113745703	113773663	LINC01234|ENST00000550223.5	-	113745703,113767074,113773614	113746595,113767208,113773663	0.660606
SK_N_DZ_cytosolic_fraction	chr15	32624296	32624325	32624324	+	RAMPAGE_only	3	3	8	0.220080	2.750000	chr15	32624214	32624326	LINE|RTE-BovB|MamRTE1	-	chr15	32628727	32636342	ARHGAP11A|ENST00000562481.1	+	32628727,32629594,32632978,32633932,32635776,32636256	32628802,32629675,32633108,32634041,32635915,32636342	0.750000
SK_N_DZ_cytosolic_fraction	chr7	25579775	25579805	25579775	-	High_confidence	3	3	12	0.330119	3.459432	chr7	25579571	25579766	LTR|ERVL-MaLR|MLT1L	-	chr7	25577047	25579801	MSTRG.31438.1	-	25577047,25579220	25577105,25579801	0.666667
SK_N_DZ_cytosolic_fraction	chr20	1467846	1467915	1467846	-	High_confidence	20	20	49	1.347988	5.011828	chr20	1467673	1468159	LTR|ERV1|LTR10B	+	chr20	1442161	1467692	NSFL1C|ENST00000216879.8	-	1442161,1445665,1452492,1453030,1454212,1454966,1458199,1464328,1466719	1443911,1445830,1452630,1453140,1454305,1455132,1458274,1464426,1467692	0.877551
SK_N_DZ_cytosolic_fraction	chr22	50757112	50757134	50757112	+	High_confidence	2	2	11	0.302610	3.121928	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.545455
SK_N_DZ_cytosolic_fraction	chr1	196690882	196690883	196690882	+	RAMPAGE_only	9	9	13	0.357629	3.022055	chr1	196690515	196691154	LTR|ERV1|LTR9D	-	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.692308
SK_N_DZ_cytosolic_fraction	chr9	110599436	110599482	110599463	+	High_confidence	8	8	26	0.715259	4.168296	chr9	110598558	110599925	LINE|L1|L1PA12	-	chr9	110599474	110605219	AL592463.1|ENST00000451108.1	+	110599474,110604417,110604709	110599528,110604488,110605219	0.923077
SK_N_DZ_cytosolic_fraction	chr2	200857716	200857746	200857745	-	High_confidence	2	3	8	0.220080	2.807355	chr2	200857615	200857696	LINE|L1|L1MA8	-	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.750000
SK_N_DZ_cytosolic_fraction	chr9	39809997	39810034	39810033	-	High_confidence	168	168	428	11.774262	5.746560	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803486	39810058	MSTRG.34826.4	-	39803486,39809485,39809730	39803859,39809633,39810058	0.897196
SK_N_DZ_cytosolic_fraction	chr12	39369854	39369894	39369893	-	RAMPAGE_only	5	6	16	0.440159	3.875000	chr12	39369860	39369969	LINE|Penelope|Penelope1_Vert	+	chr12	39357250	39367927	KIF21A|ENST00000552908.1	-	39357250,39358177,39363097,39366349,39367029,39367882	39357437,39358373,39363213,39366517,39367188,39367927	1.000000
SK_N_DZ_cytosolic_fraction	chr15	85330250	85330261	85330260	-	RAMPAGE_only	5	8	17	0.467669	3.577820	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.647059
SK_N_DZ_cytosolic_fraction	chr18	58780219	58780220	58780219	-	RAMPAGE_only	11	16	16	0.440159	3.280639	chr18	58780024	58780390	LTR|ERVL-MaLR|MSTA	-	chr18	58672612	58752730	AC104365.1|ENST00000588835.1	-	58672612,58697176,58752674	58672859,58697267,58752730	0.750000
SK_N_DZ_cytosolic_fraction	chr10	97744571	97744637	97744601	+	RAMPAGE_only	5	8	36	0.990358	4.764858	chr10	97744435	97744670	LINE|L2|L2a	-	chr10	97738476	97760907	ZFYVE27|NM_001002261.3	+	97738476,97743093,97744728,97748268,97749473,97750330,97751375,97752856,97753037,97757264,97757641,97759235	97738674,97743164,97744915,97748364,97749586,97750470,97751462,97752877,97753182,97757311,97757723,97760907	0.861111
SK_N_DZ_cytosolic_fraction	chr11	62598052	62598103	62598052	-	RAMPAGE_only	3	3	15	0.412649	3.773557	chr11	62597909	62598004	DNA|hAT-Tip100|MER91C	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.933333
SK_N_DZ_cytosolic_fraction	chr12	31651986	31652008	31652007	-	High_confidence	537	775	1383	38.046270	6.355981	chr12	31651758	31652374	LTR|ERV1|LTR9	+	chr12	31627539	31652047	MSTRG.7436.2	-	31627539,31651735	31627726,31652047	0.781634
SK_N_DZ_cytosolic_fraction	chr8	32927967	32927984	32927976	+	High_confidence	1240	1312	2803	77.110409	7.137448	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927976	33044802	MSTRG.33464.4	+	32927976,32996200,33041634,33044366	32928093,32996355,33041771,33044802	0.914734
SK_N_DZ_cytosolic_fraction	chr18	6928523	6928552	6928548	-	High_confidence	3	3	11	0.302610	2.913977	chr18	6928222	6928872	LTR|ERV1|LTR9	+	chr18	6925477	6928572	LINC00668|ENST00000580197.5	-	6925477,6928119,6928436	6927584,6928219,6928572	0.818182
SK_N_DZ_cytosolic_fraction	chr1	247905313	247905344	247905343	-	High_confidence	5	5	19	0.522689	3.794653	chr1	247905067	247905434	LTR|ERV1|HERVE_a-int	-	chr1	247898417	247905575	MSTRG.3477.1	-	247898417,247905190	247902952,247905575	0.631579
SK_N_DZ_cytosolic_fraction	chr4	87391520	87391614	87391559	-	High_confidence	11	16	93	2.558426	4.115793	chr4	87391535	87391830	SINE|Alu|AluJo	+	chr4	87336609	87391386	HSD17B11|ENST00000358290.8	-	87336609,87340489,87357278,87372708,87374698,87382254,87390860	87337366,87340606,87357416,87372815,87374830,87382362,87391386	1.000000
SK_N_DZ_cytosolic_fraction	chr3	125497340	125497365	125497354	-	RAMPAGE_only	5	5	15	0.412649	3.664498	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	0.866667
SK_N_DZ_cytosolic_fraction	chr12	6886551	6886568	6886551	-	RAMPAGE_only	2	2	7	0.192570	2.521641	chr12	6885859	6886821	LTR|ERVK|LTR5_Hs	-	chr12	6875763	6889358	SPSB2|ENST00000437851.1	-	6875763,6877498,6882189,6889305	6875914,6877600,6882287,6889358	0.714286
SK_N_DZ_cytosolic_fraction	chr7	39013437	39013442	39013440	+	High_confidence	6	7	12	0.330119	3.251629	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.750000
SK_N_DZ_cytosolic_fraction	chr21	18485878	18485884	18485883	-	High_confidence	20	20	30	0.825299	4.706891	chr21	18485714	18486071	LTR|ERVL-MaLR|THE1B	-	chr21	18365139	18485879	TMPRSS15|ENST00000422787.1	-	18365139,18372192,18379282,18380539,18383626,18397878,18398198,18485798	18365248,18372324,18379318,18380584,18383778,18397946,18398329,18485879	0.500000
SK_N_DZ_cytosolic_fraction	chr3	129365473	129365474	129365473	-	High_confidence	195	198	212	5.832111	6.360098	chr3	129365318	129365670	LTR|ERVL-MaLR|THE1A	-	chr3	129361089	129365462	MSTRG.25278.1	-	129361089	129365462	0.966981
SK_N_DZ_cytosolic_fraction	chr6	33271336	33271345	33271336	-	High_confidence	2	4	7	0.192570	2.807355	chr6	33271127	33271345	SINE|MIR|MIR	-	chr6	33267869	33271777	VPS52|ENST00000463486.5	-	33267869,33268107,33268498,33269013,33269489,33269743,33269998,33270198,33271690	33267997,33268208,33268649,33269189,33269557,33269819,33270051,33270283,33271777	0.857143
SK_N_DZ_cytosolic_fraction	chr7	39013153	39013175	39013166	+	High_confidence	21	22	54	1.485538	4.809599	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.833333
SK_N_DZ_cytosolic_fraction	chr15	28832903	28832918	28832917	+	High_confidence	6	6	16	0.440159	3.506891	chr15	28832673	28832970	SINE|Alu|AluYm1	+	chr15	28832379	28848112	MSTRG.10906.10	+	28832379,28833275,28838687,28846738,28847686	28832460,28833378,28838822,28846836,28848112	0.812500
SK_N_DZ_cytosolic_fraction	chr14	47795070	47795072	47795071	-	High_confidence	10	15	18	0.495179	4.058814	chr14	47794965	47800647	LINE|L1|L1PA2	+	chr14	47764952	47795014	LINC00648|NR_039996.1	-	47764952,47789905,47794971	47767757,47789943,47795014	0.555556
SK_N_DZ_cytosolic_fraction	chr16	67161111	67161134	67161133	+	RAMPAGE_only	3	4	11	0.302610	3.321928	chr16	67161158	67161467	SINE|Alu|AluJo	+	chr16	67159931	67162663	FBXL8|ENST00000518148.1	+	67159931,67161734	67160056,67162663	0.545455
SK_N_DZ_cytosolic_fraction	chr4	189722274	189722293	189722290	-	RAMPAGE_only	18	18	41	1.127908	4.839776	chr4	189721949	189722303	LINE|L1|L1M3b	+	chr4	189705740	189716323	MSTRG.27466.1	-	189705740,189716234	189708489,189716323	0.682927
SK_N_DZ_cytosolic_fraction	chr19	12681085	12681091	12681090	-	High_confidence	3	3	7	0.192570	2.584963	chr19	12680833	12681131	SINE|Alu|AluSx3	-	chr19	12679624	12681161	DHPS|ENST00000599481.1	-	12679624,12679800,12680195,12681032	12679719,12679922,12680325,12681161	0.571429
SK_N_DZ_cytosolic_fraction	chr16	58116871	58116924	58116875	-	RAMPAGE_only	3	3	20	0.550199	3.932138	chr16	58116567	58116831	SINE|MIR|MIR	-	chr16	58113959	58115567	CFAP20|ENST00000564150.1	-	58113959,58114809,58115268	58114030,58114920,58115567	0.700000
SK_N_DZ_cytosolic_fraction	chr8	26366326	26366388	26366387	+	RAMPAGE_only	2	2	11	0.302610	2.663533	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	1.000000
SK_N_DZ_cytosolic_fraction	chr9	70129294	70129305	70129294	+	High_confidence	12	13	26	0.715259	3.973661	chr9	70129114	70129476	LTR|ERVL-MaLR|THE1B	+	chr9	70129339	70216940	MSTRG.35017.2	+	70129339,70131518,70140144,70143553,70168701,70170478,70216918	70129393,70131612,70140288,70143819,70168795,70170631,70216940	0.846154
SK_N_DZ_cytosolic_fraction	chr7	143903863	143903878	143903863	-	RAMPAGE_only	3	3	7	0.192570	2.584963	chr7	143903656	143904023	LTR|ERVL-MaLR|THE1B	-	chr7	143876171	143902198	TCAF1|ENST00000478172.1	-	143876171,143902073	143876622,143902198	0.714286
SK_N_DZ_cytosolic_fraction	chr2	15591256	15591277	15591256	+	High_confidence	2	2	8	0.220080	2.750000	chr2	15591149	15591288	SINE|MIR|MIRb	+	chr2	15591177	15631111	DDX1|ENST00000381341.6	+	15591177,15591653,15595144,15595489,15596733,15597374,15599668,15602547,15603191,15603813,15604436,15605949,15606149,15607174,15613223,15617243,15618180,15620207,15621064,15623435,15627053,15628444,15628637,15628796,15629601,15629989,15630775	15591286,15591949,15595196,15595553,15596763,15597471,15599716,15602631,15603275,15603890,15604509,15606026,15606264,15607313,15613284,15617342,15618270,15620396,15621116,15623582,15627145,15628517,15628710,15628839,15629697,15630110,15631111	0.875000
SK_N_DZ_cytosolic_fraction	chr7	29970323	29970359	29970358	-	High_confidence	4	4	19	0.522689	3.683542	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	0.842105
SK_N_DZ_cytosolic_fraction	chr9	33068823	33068830	33068823	-	RAMPAGE_only	4	4	12	0.330119	2.913977	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.916667
SK_N_DZ_cytosolic_fraction	chr5	154482089	154482106	154482105	-	RAMPAGE_only	5	5	9	0.247590	2.641604	chr5	154481930	154482125	SINE|MIR|MIRb	+	chr5	154474971	154478264	HAND1|NM_004821.2	-	154474971,154477465	154475910,154478264	0.666667
SK_N_DZ_cytosolic_fraction	chr3	43417291	43417317	43417291	-	RAMPAGE_only	6	8	31	0.852809	4.349192	chr3	43417045	43417666	LTR|ERV1|LTR9	+	chr3	43366347	43621965	ANO10|ENST00000350459.8	-	43366347,43432610,43549719,43555277,43561219,43565652,43574808,43580352,43598531,43600383,43605713,43621908	43366974,43432727,43549848,43555469,43561402,43565727,43574864,43580472,43598666,43600581,43605863,43621965	0.806452
SK_N_DZ_cytosolic_fraction	chr19	566729	566730	566729	+	RAMPAGE_only	12	12	14	0.385139	3.664498	chr19	566638	566854	LTR|ERV1|LTR4	-	chr19	571276	583493	BSG|NM_198590.2	+	571276,579499,580378,580645,581314,582305,582513,582749	571579,579656,580461,580782,581591,582330,582582,583493	0.642857
SK_N_DZ_cytosolic_fraction	chr15	22758428	22758465	22758438	+	High_confidence	7	7	28	0.770279	4.450212	chr15	22758208	22758505	SINE|Alu|AluYm1	+	chr15	22758492	22764516	AC138649.1|ENST00000618814.1	+	22758492,22758818,22764223	22758525,22758921,22764516	0.642857
SK_N_DZ_cytosolic_fraction	chr11	13419714	13419734	13419714	-	RAMPAGE_only	3	4	9	0.247590	2.725481	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.777778
SK_N_DZ_cytosolic_fraction	chr17	59204599	59204632	59204631	+	RAMPAGE_only	6	6	16	0.440159	3.024397	chr17	59204419	59204735	SINE|Alu|AluSz	+	chr17	59155498	59206709	PRR11|NM_018304.3	+	59155498,59169747,59185053,59185439,59193491,59194756,59195330,59197543,59197692,59201562	59155805,59169880,59185204,59185562,59193734,59194855,59195443,59197603,59197789,59206709	1.000000
SK_N_DZ_cytosolic_fraction	chr11	17352281	17352298	17352281	+	High_confidence	42	45	127	3.493765	5.879631	chr11	17352168	17352474	SINE|Alu|AluY	-	chr11	17352203	17383531	MSTRG.5373.5	+	17352203,17356650,17367008,17368866,17372005,17379762	17354320,17357001,17367347,17368964,17379726,17383531	0.992126
SK_N_DZ_cytosolic_fraction	chr19	58306188	58306198	58306188	+	High_confidence	4	4	11	0.302610	3.121928	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306086	58315203	MSTRG.18927.37	+	58306086,58312027	58306216,58315203	0.727273
SK_N_DZ_cytosolic_fraction	chr3	125937014	125937025	125937014	-	High_confidence	6	6	11	0.302610	3.321928	chr3	125936638	125942696	LINE|L1|L1PA2	+	chr3	125929274	125937039	ALG1L|ENST00000340333.7	-	125929274,125930556,125931637,125932649,125933574,125936897	125929567,125930629,125931752,125932709,125933696,125937039	0.545455
SK_N_DZ_cytosolic_fraction	chr22	35231054	35231059	35231054	-	High_confidence	17	37	54	1.485538	5.606739	chr22	35230880	35231246	LTR|ERVL-MaLR|THE1D	-	chr22	35119823	35231056	LINC01399|ENST00000423311.1	-	35119823,35120012,35171434,35172338,35194856,35230997	35119904,35120067,35171602,35172460,35195019,35231056	0.518519
SK_N_DZ_cytosolic_fraction	chr1	88887267	88887279	88887267	-	RAMPAGE_only	5	5	11	0.302610	2.845351	chr1	88886926	88887218	SINE|Alu|AluSx1	-	chr1	88853223	88891496	GTF2B|ENST00000448623.5	-	88853223,88857372,88859881,88860139,88863980,88887260,88891482	88853346,88857487,88860011,88860286,88864114,88887367,88891496	1.000000
SK_N_DZ_cytosolic_fraction	chr2	15589042	15589046	15589042	+	RAMPAGE_only	2	3	7	0.192570	2.807355	chr2	15588814	15589389	LTR|ERV1|LTR78	-	chr2	15591177	15631111	DDX1|ENST00000381341.6	+	15591177,15591653,15595144,15595489,15596733,15597374,15599668,15602547,15603191,15603813,15604436,15605949,15606149,15607174,15613223,15617243,15618180,15620207,15621064,15623435,15627053,15628444,15628637,15628796,15629601,15629989,15630775	15591286,15591949,15595196,15595553,15596763,15597471,15599716,15602631,15603275,15603890,15604509,15606026,15606264,15607313,15613284,15617342,15618270,15620396,15621116,15623582,15627145,15628517,15628710,15628839,15629697,15630110,15631111	0.714286
SK_N_DZ_cytosolic_fraction	chr8	75324433	75324481	75324454	-	High_confidence	6	6	31	0.852809	4.825164	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223702	75324741	CASC9|ENST00000522183.1	-	75223702,75324564	75224358,75324741	0.645161
SK_N_DZ_cytosolic_fraction	chr10	65017614	65017617	65017614	-	RAMPAGE_only	18	18	33	0.907829	4.551526	chr10	65017343	65017959	LTR|ERV1|LTR9	+	chr10	64901135	64924518	LOC101928887|NR_134456.1	-	64901135,64924236	64903425,64924518	0.545455
SK_N_DZ_cytosolic_fraction	chrX	19789571	19789572	19789571	-	RAMPAGE_only	6	6	7	0.192570	2.584963	chrX	19789383	19789752	LTR|ERVL-MaLR|MLT1B	-	chrX	19535692	19799751	SH3KBP1|ENST00000379698.8	-	19535692,19537716,19541924,19545921,19549973,19569102,19588642,19592066,19594948,19607937,19631863,19645399,19683822,19695611,19706880,19746317,19799633	19536458,19537780,19542193,19546050,19550083,19569188,19588802,19592147,19595000,19608045,19631958,19645475,19684028,19695741,19706984,19746441,19799751	0.857143
SK_N_DZ_cytosolic_fraction	chr10	17386935	17386951	17386935	+	High_confidence	5	5	10	0.275100	3.321928	chr10	17386606	17386994	LTR|ERV1|MER48	-	chr10	17386935	17408286	ST8SIA6-AS1|NR_034129.1	+	17386935,17399104,17407967	17387075,17399202,17408286	0.600000
SK_N_DZ_cytosolic_fraction	chr10	63664649	63664665	63664654	+	High_confidence	10	10	23	0.632729	4.262692	chr10	63664644	63665398	LTR|ERV1|LTR17	-	chr10	63664663	63990568	AC022387.1|ENST00000444770.1	+	63664663,63684921,63990268	63664772,63685306,63990568	0.521739
SK_N_DZ_cytosolic_fraction	chr1	1505136	1505155	1505154	+	RAMPAGE_only	3	3	7	0.192570	2.807355	chr1	1504965	1505957	LTR|ERVK|LTR13	-	chr1	1503249	1509452	AL645728.2|ENST00000641974.1	+	1503249,1509204	1503661,1509452	0.571429
SK_N_DZ_cytosolic_fraction	chr20	18794077	18794086	18794077	+	High_confidence	85	85	193	5.309422	6.495653	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.989637
SK_N_DZ_cytosolic_fraction	chr8	143039246	143039282	143039246	+	High_confidence	24	30	142	3.906414	5.980502	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053938	MSTRG.34335.3	+	143039260,143042957,143043177,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044817,143047814,143049298,143053938	0.929577
SK_N_DZ_cytosolic_fraction	chr6	131070314	131070334	131070333	-	RAMPAGE_only	3	3	8	0.220080	2.521641	chr6	131070281	131070697	LTR|ERVL-MaLR|MLT1J2	+	chr6	130839346	131063322	EPB41L2|ENST00000628542.2	-	130839346,130858130,130863637,130865535,130867458,130869562,130885095,130890293,130894343,130894966,130899490,130900961,130904464,130908820,130926604,130955104,130955993,131063154	130840598,130858243,130863718,130865634,130867581,130870126,130885268,130890466,130894441,130895119,130899578,130901180,130904540,130908863,130926709,130955317,130956499,131063322	0.875000
SK_N_DZ_cytosolic_fraction	chr2	201516425	201516426	201516425	-	RAMPAGE_only	6	6	8	0.220080	3.000000	chr2	201516247	201516602	LTR|ERVL-MaLR|THE1D	-	chr2	201377206	201451596	TRAK2|NM_015049.2	-	201377206,201384110,201386217,201387702,201389299,201389800,201392908,201394797,201395313,201397501,201398144,201399376,201401017,201407402,201420416,201451349	201381218,201384216,201386484,201388001,201389503,201389880,201393046,201394872,201395444,201397580,201398354,201399493,201401094,201407597,201420706,201451596	0.625000
SK_N_DZ_cytosolic_fraction	chr2	43137645	43137660	43137659	-	RAMPAGE_only	8	9	24	0.660239	4.095795	chr2	43137289	43137984	LINE|L2|L2a	+	chr2	43097745	43102691	LINC02580|ENST00000434020.1	-	43097745,43102034	43098040,43102691	0.541667
SK_N_DZ_cytosolic_fraction	chr13	52661537	52661561	52661560	+	RAMPAGE_only	4	4	12	0.330119	3.022055	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
SK_N_DZ_cytosolic_fraction	chr8	2726958	2726968	2726962	+	High_confidence	17	19	56	1.540558	5.374055	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.696429
SK_N_DZ_cytosolic_fraction	chr5	40604013	40604014	40604013	-	RAMPAGE_only	10	11	13	0.357629	3.418296	chr5	40603855	40604209	LTR|ERVL-MaLR|THE1A	-	chr5	40512332	40755908	TTC33|ENST00000636863.1	-	40512332,40603931,40746797,40755823	40513069,40604036,40747019,40755908	0.692308
SK_N_DZ_cytosolic_fraction	chr1	28681084	28681085	28681084	+	RAMPAGE_only	12	12	12	0.330119	3.418296	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	0.916667
SK_N_DZ_cytosolic_fraction	chr15	53684583	53684662	53684641	-	High_confidence	25	28	138	3.796374	5.693493	chr15	53684199	53690229	LINE|L1|L1PA3	+	chr15	53515773	53684627	MSTRG.11511.6	-	53515773,53523217,53597078,53609512,53613665,53615425,53665571,53684145	53517754,53523322,53597274,53609592,53613757,53616243,53665768,53684627	0.978261
SK_N_DZ_cytosolic_fraction	chr2	182928785	182928789	182928788	-	RAMPAGE_only	3	4	7	0.192570	2.584963	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.571429
SK_N_DZ_cytosolic_fraction	chr2	15591120	15591170	15591120	+	High_confidence	63	76	238	6.547370	6.378500	chr2	15591149	15591288	SINE|MIR|MIRb	+	chr2	15591177	15631111	DDX1|ENST00000381341.6	+	15591177,15591653,15595144,15595489,15596733,15597374,15599668,15602547,15603191,15603813,15604436,15605949,15606149,15607174,15613223,15617243,15618180,15620207,15621064,15623435,15627053,15628444,15628637,15628796,15629601,15629989,15630775	15591286,15591949,15595196,15595553,15596763,15597471,15599716,15602631,15603275,15603890,15604509,15606026,15606264,15607313,15613284,15617342,15618270,15620396,15621116,15623582,15627145,15628517,15628710,15628839,15629697,15630110,15631111	0.642857
SK_N_DZ_cytosolic_fraction	chr12	26914549	26914572	26914560	-	RAMPAGE_only	5	5	13	0.357629	3.418296	chr12	26914520	26914587	LINE|RTE-BovB|MamRTE1	+	chr12	26905180	26917734	INTS13|ENST00000538155.5	-	26905180,26906301,26911177,26913456,26913973,26916001,26917351,26917643	26905536,26906437,26911317,26913687,26914128,26916180,26917441,26917734	0.923077
SK_N_DZ_cytosolic_fraction	chr19	34860632	34860654	34860633	-	High_confidence	11	16	46	1.265458	4.729191	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849045	34860699	MSTRG.18010.1	-	34849045,34860173	34849549,34860699	0.739130
SK_N_DZ_cytosolic_fraction	chr9	128921399	128921413	128921399	+	High_confidence	62	67	140	3.851394	5.988820	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.971429
SK_N_DZ_cytosolic_fraction	chr15	78595715	78596062	78595894	-	RAMPAGE_only	10	11	191	5.254402	6.126820	chr15	78595689	78596031	LTR|ERVL-MaLR|MLT1A0	+	chr15	78595304	78621179	CHRNA3|ENST00000326828.5	-	78595304,78601252,78617023,78618616,78618775,78620712	78596732,78602264,78617133,78618661,78618915,78621179	0.958115
SK_N_DZ_cytosolic_fraction	chr20	54208557	54208558	54208557	+	High_confidence	16	16	16	0.440159	3.452820	chr20	54208550	54208675	SINE|MIR|MIR3	-	chr20	54208311	54219203	PFDN4|ENST00000487129.1	+	54208311,54208834,54214350,54215299,54219018	54208558,54208915,54214458,54215440,54219203	1.000000
SK_N_DZ_cytosolic_fraction	chr14	26678854	26678966	26678900	+	High_confidence	47	50	217	5.969661	6.239309	chr14	26673315	26679374	LINE|L1|L1PA2	-	chr14	26678850	26806467	MSTRG.9743.3	+	26678850,26731063,26735238,26779794,26780481,26782137,26797490,26797913,26806235	26679029,26731156,26735372,26779879,26780618,26782208,26797568,26798030,26806467	0.709677
SK_N_DZ_cytosolic_fraction	chr5	75512945	75512946	75512945	+	High_confidence	8	8	9	0.247590	2.750000	chr5	75512845	75513016	SINE|Alu|AluSx1	+	chr5	75512068	75573837	POLK|ENST00000514296.5	+	75512068,75534827,75547009,75552471,75569339,75573737	75512946,75534964,75547157,75552591,75569492,75573837	0.777778
SK_N_DZ_cytosolic_fraction	chr1	112762631	112762680	112762631	+	High_confidence	40	45	310	8.528087	6.057295	chr1	112762625	112762805	SINE|MIR|MIRb	+	chr1	112762569	112797897	MSTRG.1854.1	+	112762569,112797591	112762746,112797897	0.883871
SK_N_DZ_cytosolic_fraction	chr7	6590257	6590300	6590285	+	High_confidence	8	11	45	1.237948	4.986189	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.555556
SK_N_DZ_cytosolic_fraction	chr2	13532983	13533038	13533001	-	High_confidence	11	13	74	2.035737	5.565035	chr2	13532711	13533096	LTR|ERV1|HERVE_a-int	-	chr2	13519496	13533266	MSTRG.19130.3	-	13519496,13523276,13532830	13521117,13523355,13533266	0.581081
SK_N_DZ_cytosolic_fraction	chr14	100929920	100929921	100929920	+	High_confidence	49	56	56	1.540558	5.472446	chr14	100929864	100929989	LINE|L1|L1ME5	+	chr14	100929918	100933756	MSTRG.10698.1	+	100929918,100932452	100932126,100933756	0.982143
SK_N_DZ_cytosolic_fraction	chr11	112860061	112860095	112860094	+	High_confidence	16	16	44	1.210438	4.788755	chr11	112859910	112860137	LINE|L2|L2c	-	chr11	112860373	112860806	MSTRG.6650.1	+	112860373	112860806	0.681818
SK_N_DZ_cytosolic_fraction	chr20	46978231	46978237	46978231	+	High_confidence	5	5	9	0.247590	2.947703	chr20	46978036	46978275	LTR|ERVL-MaLR|MLT1K	-	chr20	46978234	46990070	EYA2|ENST00000497428.1	+	46978234,46990000	46978636,46990070	0.777778
SK_N_DZ_cytosolic_fraction	chr15	78245687	78245688	78245687	-	High_confidence	24	24	24	0.660239	3.970176	chr15	78245271	78246702	LTR|ERV1|LTR12C	-	chr15	78170913	78245688	ACSBG1|ENST00000560817.5	-	78170913,78173592,78174384,78178613,78179549,78180754,78181968,78182465,78182704,78245268	78171529,78173839,78174524,78178831,78179780,78180936,78182145,78182615,78182785,78245688	0.875000
SK_N_DZ_cytosolic_fraction	chr12	124014187	124014251	124014187	+	RAMPAGE_only	6	6	39	1.072888	5.017536	chr12	124013958	124014362	LINE|L2|L2a	-	chr12	123973294	124015422	ZNF664|ENST00000337815.8	+	123973294,123973885,123988042,124011380,124011545	123973352,123974020,123988138,124011441,124015422	0.974359
SK_N_DZ_cytosolic_fraction	chr14	102083051	102083246	102083177	-	RAMPAGE_only	10	10	119	3.273685	5.976098	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.983193
SK_N_DZ_cytosolic_fraction	chr11	93734916	93734924	93734916	-	High_confidence	3	3	7	0.192570	2.521641	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730282	93734661	TAF1D|ENST00000525928.5	-	93730282,93730676,93731149,93731752,93732243,93733086,93733349	93730447,93730712,93731216,93731799,93732291,93733121,93734661	1.000000
SK_N_DZ_cytosolic_fraction	chr7	137254947	137254969	137254968	-	RAMPAGE_only	2	3	7	0.192570	2.584963	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.857143
SK_N_DZ_cytosolic_fraction	chr2	110642789	110642790	110642789	-	High_confidence	38	38	38	1.045378	4.418723	chr2	110642693	110642986	SINE|Alu|AluJr	-	chr2	110641325	110642790	BUB1|ENST00000478175.1	-	110641325,110641641,110642118,110642448	110641464,110641803,110642234,110642790	0.763158
SK_N_DZ_cytosolic_fraction	chr3	128104773	128104911	128104856	-	RAMPAGE_only	6	7	33	0.907829	4.542748	chr3	128104760	128104822	LINE|CR1|L3	-	chr3	128064781	128101619	RUVBL1|ENST00000472125.5	-	128064781,128097299,128098881,128100594,128101558	128065220,128097498,128098945,128100744,128101619	0.515152
SK_N_DZ_cytosolic_fraction	chr19	1380861	1380862	1380861	+	RAMPAGE_only	9	9	9	0.247590	2.641604	chr19	1380788	1380944	LTR|ERVL-MaLR|MLT1F1	-	chr19	1438357	1440494	RPS15|ENST00000233609.8	+	1438357,1438810,1440018,1440348	1438428,1438892,1440253,1440494	1.000000
SK_N_DZ_cytosolic_fraction	chr20	50171632	50171673	50171662	+	High_confidence	2	2	15	0.412649	3.807355	chr20	50171556	50171812	LTR|ERVL-MaLR|MLT1B	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.733333
SK_N_DZ_cytosolic_fraction	chr17	602076	602088	602076	-	RAMPAGE_only	3	3	9	0.247590	2.641604	chr17	602038	602389	LINE|L2|L2c	+	chr17	518952	676407	VPS53|ENST00000576149.5	-	518952,519825,521600,532841,537027,551871,553379,560425,562502,586269,599944,601794,623532,627173,628087,631549,676179	519298,519930,521738,532911,537176,551950,553462,560573,562745,586364,600094,601896,623674,627316,628231,631628,676407	1.000000
SK_N_DZ_cytosolic_fraction	chr5	90073615	90073720	90073615	-	High_confidence	50	51	246	6.767449	6.933377	chr5	90073229	90079236	LINE|L1|L1PA2	+	chr5	89864747	90073710	MSTRG.28248.2	-	89864747,89908951,89920675,89924760,89932005,89943384,90069404,90073209	89865199,89909089,89920743,89924879,89932089,89943425,90069526,90073710	0.585366
SK_N_DZ_cytosolic_fraction	chr1	235110548	235110562	235110548	-	RAMPAGE_only	5	5	18	0.495179	3.852169	chr1	235110540	235110668	SINE|MIR|MIR3	-	chr1	235109335	235128921	MSTRG.3301.1	-	235109335,235111740,235113767,235119817,235122325,235128594	235111703,235112108,235113910,235119899,235122372,235128921	0.944444
SK_N_DZ_cytosolic_fraction	chr15	51603751	51603765	51603751	-	High_confidence	5	5	12	0.330119	3.277613	chr15	51603584	51603891	SINE|Alu|AluY	+	chr15	51457371	51603701	MSTRG.11501.12	-	51457371,51458505,51458708,51463378,51464674,51465565,51466183,51471222,51474343,51476588,51478270,51479947,51480541,51486072,51487953,51488547,51491577,51495023,51498551,51502805,51507133,51514441,51517077,51535662,51536165,51537487,51538212,51542332,51545582,51547229,51563380,51564124,51565087,51568486,51576055,51603606	51457466,51458627,51458795,51463496,51464876,51465651,51466311,51471401,51474592,51476716,51478347,51480139,51481623,51486337,51488119,51488645,51491747,51495134,51500231,51503033,51507253,51514559,51517167,51535784,51536862,51537759,51538452,51542507,51545766,51547408,51563447,51564260,51565166,51568558,51576181,51603701	0.833333
SK_N_DZ_cytosolic_fraction	chr1	100363162	100363163	100363162	+	High_confidence	114	116	156	4.291553	5.246034	chr1	100362798	100363434	LTR|ERV1|LTR9	-	chr1	100363160	100484639	CDC14A|ENST00000646563.1	+	100363160,100377545,100390731,100424221,100439931,100442933,100462650,100467955,100484291	100363225,100377621,100390824,100424301,100439998,100442996,100462881,100468094,100484639	0.653846
SK_N_DZ_cytosolic_fraction	chr10	55899980	55899987	55899980	-	High_confidence	3	3	7	0.192570	2.807355	chr10	55899641	55905708	LINE|L1|L1PA3	+	chr10	55840360	55900079	MSTRG.4060.1	-	55840360,55899633	55840479,55900079	0.571429
SK_N_DZ_cytosolic_fraction	chr16	4894878	4894891	4894882	-	RAMPAGE_only	16	18	55	1.513048	4.774690	chr16	4894801	4895209	LTR|ERVL-MaLR|MLT1K	+	chr16	4882822	4937064	PPL|ENST00000590782.6	-	4882822,4887134,4888101,4888977,4890183,4890727,4891810,4892034,4893212,4893540,4894466,4895260,4895593,4897674,4899012,4899222,4900829,4900963,4902405,4903885,4910849,4936983	4886047,4887227,4888218,4889061,4890334,4890921,4891949,4892213,4893370,4893638,4894618,4895407,4895716,4897770,4899120,4899384,4900865,4901089,4902526,4904040,4910949,4937064	0.927273
SK_N_DZ_cytosolic_fraction	chr15	32624208	32624263	32624262	+	RAMPAGE_only	2	2	10	0.275100	3.121928	chr15	32624214	32624326	LINE|RTE-BovB|MamRTE1	-	chr15	32628727	32636342	ARHGAP11A|ENST00000562481.1	+	32628727,32629594,32632978,32633932,32635776,32636256	32628802,32629675,32633108,32634041,32635915,32636342	0.500000
SK_N_DZ_cytosolic_fraction	chr17	80094991	80094997	80094991	+	RAMPAGE_only	2	2	7	0.192570	2.807355	chr17	80094865	80095065	LINE|L1|L1MD3	-	chr17	80048369	80100604	CCDC40|ENST00000574799.5	+	80048369,80049905,80050063,80058493,80058857,80065484,80081545,80081875,80084742,80086002,80087606,80088010,80089763,80095262,80097244,80099526	80048761,80049989,80050283,80058651,80058980,80065606,80081789,80082058,80084988,80086216,80087776,80088102,80089884,80095451,80097403,80100604	0.571429
SK_N_DZ_cytosolic_fraction	chr10	65570465	65570466	65570465	+	High_confidence	12	12	15	0.412649	3.467720	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570451	65615757	LINC01515|ENST00000601979.5	+	65570451,65572934,65585484,65585664,65615635	65570545,65573056,65585567,65585802,65615757	0.800000
SK_N_DZ_cytosolic_fraction	chr19	39485748	39485803	39485802	+	High_confidence	18	18	36	0.990358	4.072431	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	1.000000
SK_N_DZ_cytosolic_fraction	chr7	95837528	95837539	95837528	+	High_confidence	6	6	13	0.357629	3.180833	chr7	95831968	95837992	LINE|L1|L1PA3	-	chr7	95837617	96028321	DYNC1I1|ENST00000519371.1	+	95837617,95869882,95977511,95984814,95987055,95995947,96028174	95837649,95869998,95977601,95984977,95987155,95996073,96028321	1.000000
SK_N_DZ_cytosolic_fraction	chr9	69874562	69874581	69874568	+	High_confidence	5	5	15	0.412649	3.640224	chr9	69874447	69874593	LTR|ERVL-MaLR|MLT1K	-	chr9	69874965	69907055	MSTRG.35012.8	+	69874965,69886837,69905953	69875261,69886895,69907055	0.866667
SK_N_DZ_cytosolic_fraction	chr2	43447145	43447146	43447145	-	RAMPAGE_only	39	43	51	1.403008	4.062683	chr2	43446976	43447290	LTR|ERVL-MaLR|THE1C	-	chr2	43344156	43463259	THADA|ENST00000485353.5	-	43344156,43397970,43428099,43430212,43463033	43344237,43398139,43428231,43430302,43463259	0.960784
SK_N_DZ_cytosolic_fraction	chr3	9363272	9363286	9363272	+	High_confidence	1	1	7	0.192570	2.584963	chr3	9363317	9363437	SINE|MIR|MIR3	+	chr3	9363097	9384870	THUMPD3|ENST00000515662.6	+	9363097,9365015,9366907,9371059,9374515,9377818,9380502,9383198,9384211,9384523	9363728,9365320,9366985,9371536,9374646,9377888,9380618,9383309,9384335,9384870	0.857143
SK_N_DZ_cytosolic_fraction	chr5	134341746	134341758	134341757	-	RAMPAGE_only	8	8	18	0.495179	3.528064	chr5	134341492	134342129	LTR|ERV1|LTR9	+	chr5	134308000	134319389	CDKL3|ENST00000520592.1	-	134308000,134308573,134319357	134308466,134308727,134319389	0.777778
SK_N_DZ_cytosolic_fraction	chr9	36643053	36643065	36643053	+	RAMPAGE_only	4	5	11	0.302610	3.095795	chr9	36643100	36643405	SINE|Alu|AluSq	+	chr9	36572929	36677417	MELK|ENST00000626154.2	+	36572929,36589535,36594627,36597221,36599393,36607578,36630298,36633101,36642996,36651745,36657240,36665349,36669309,36670997,36674833,36677159	36573007,36589652,36594771,36597290,36599486,36607673,36630367,36633200,36643083,36651877,36657363,36665581,36669406,36671166,36674937,36677417	1.000000
SK_N_DZ_cytosolic_fraction	chr5	80627016	80627274	80627044	-	RAMPAGE_only	25	25	631	17.358783	4.915369	chr5	80626936	80627057	SINE|Alu|FLAM_A	-	chr5	80626225	80654981	DHFR|NR_110936.1	-	80626225,80633876,80649388,80654403	80629165,80633992,80649494,80654981	1.000000
SK_N_DZ_cytosolic_fraction	chr10	101730044	101730119	101730118	-	High_confidence	127	154	533	14.662807	5.655170	chr10	101729855	101730163	SINE|Alu|AluY	+	chr10	101698973	101730132	MSTRG.4680.1	-	101698973,101702119,101729716	101700334,101702295,101730132	0.632270
SK_N_DZ_cytosolic_fraction	chr19	9140390	9140428	9140427	+	High_confidence	40	41	145	3.988944	6.287186	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.917241
SK_N_DZ_cytosolic_fraction	chr15	53684431	53684444	53684443	-	High_confidence	4	5	11	0.302610	3.321928	chr15	53684199	53690229	LINE|L1|L1PA3	+	chr15	53515773	53684627	MSTRG.11511.6	-	53515773,53523217,53597078,53609512,53613665,53615425,53665571,53684145	53517754,53523322,53597274,53609592,53613757,53616243,53665768,53684627	0.909091
SK_N_DZ_cytosolic_fraction	chr9	20658312	20658349	20658338	+	High_confidence	24	27	123	3.383725	5.681319	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.910569
SK_N_DZ_cytosolic_fraction	chr12	54240415	54240447	54240427	-	RAMPAGE_only	2	2	9	0.247590	2.750000	chr12	54240395	54240526	SINE|Alu|AluJr	-	chr12	54230945	54259545	CBX5|NM_001127322.1	-	54230945,54246114,54252040,54257513,54259269	54241905,54246215,54252227,54257692,54259545	0.888889
SK_N_DZ_cytosolic_fraction	chr5	51678351	51678363	51678362	-	RAMPAGE_only	12	16	27	0.742769	4.209867	chr5	51678101	51678371	SINE|MIR|MIR	-	chr5	51480235	51664961	MSTRG.27852.3	-	51480235,51483868,51484753,51664613	51482240,51483975,51484860,51664961	0.555556
SK_N_DZ_cytosolic_fraction	chr1	43120069	43120158	43120147	+	High_confidence	86	92	353	9.711015	6.562706	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43120066	43156396	MSTRG.1003.1	+	43120066,43150760,43152827,43156205	43120272,43150820,43152931,43156396	0.668555
SK_N_DZ_cytosolic_fraction	chr5	116075313	116075323	116075313	+	RAMPAGE_only	2	2	7	0.192570	2.807355	chr5	116075193	116075547	LTR|ERVL-MaLR|THE1B	+	chr5	116084975	116293290	COMMD10|NM_016144.3	+	116084975,116087496,116091078,116092544,116134067,116291516,116292450	116085093,116087587,116091189,116092700,116134178,116291576,116293290	0.714286
SK_N_DZ_cytosolic_fraction	chr21	38121741	38121753	38121741	+	High_confidence	4	5	17	0.467669	3.734522	chr21	38121639	38121787	SINE|Alu|AluSp	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	1.000000
SK_N_DZ_cytosolic_fraction	chr22	50756908	50756950	50756949	+	High_confidence	5	6	19	0.522689	3.503258	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.789474
SK_N_DZ_cytosolic_fraction	chr1	78651475	78651499	78651487	+	RAMPAGE_only	3	4	11	0.302610	3.321928	chr1	78651082	78651592	DNA|hAT-Charlie|MER1A	-	chr1	78649857	78664078	IFI44|ENST00000472152.5	+	78649857,78654242,78655013,78655361,78659311,78663764	78649905,78654279,78655209,78655511,78659483,78664078	0.636364
SK_N_DZ_cytosolic_fraction	chr9	20658589	20658624	20658597	+	High_confidence	5	5	28	0.770279	4.209867	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.785714
SK_N_DZ_cytosolic_fraction	chr4	140267522	140267557	140267522	+	High_confidence	3	3	10	0.275100	2.725481	chr4	140267433	140267902	LTR|ERVL|LTR33A_	+	chr4	140267623	140269668	MSTRG.27125.2	+	140267623,140269385	140267981,140269668	0.800000
SK_N_DZ_cytosolic_fraction	chr15	33194695	33194715	33194708	-	High_confidence	20	20	73	2.008227	5.632073	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.794521
SK_N_DZ_cytosolic_fraction	chr5	34244753	34244812	34244778	-	High_confidence	8	8	42	1.155418	4.594466	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34166760	34244796	MSTRG.27713.3	-	34166760,34175444,34175821,34179012,34182679,34218294,34244615	34169153,34175537,34175957,34179097,34182867,34218450,34244796	0.761905
SK_N_DZ_cytosolic_fraction	chr7	93591304	93591394	93591324	+	High_confidence	79	84	684	18.816811	6.387894	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591206	93811677	MSTRG.32167.1	+	93591206,93807203	93591771,93811677	0.874269
SK_N_DZ_cytosolic_fraction	chr2	237422420	237422458	237422452	-	RAMPAGE_only	15	15	61	1.678107	5.069601	chr2	237422183	237422634	LTR|ERVL-MaLR|MLT1C	-	chr2	237324011	237414375	COL6A3|ENST00000295550.8	-	237324011,237325559,237333449,237334625,237336134,237339014,237340451,237342064,237344349,237344940,237345057,237345180,237346502,237347806,237348348,237348612,237350146,237351129,237352521,237353340,237354898,237357337,237357816,237358520,237359034,237359205,237359361,237360087,237361120,237361738,237363252,237364349,237365697,237366686,237368562,237371731,237374411,237376771,237378635,237380914,237387581,237394586,237396726,237413952	237324814,237325724,237333548,237334889,237336532,237339117,237341150,237342161,237344843,237344952,237345094,237345213,237346565,237347869,237348384,237348663,237350209,237351192,237352584,237353403,237354934,237357391,237357882,237358583,237359088,237359250,237359388,237360159,237361174,237361831,237363398,237364428,237366035,237367286,237369177,237372337,237375020,237377344,237379235,237381499,237388184,237395204,237396847,237414375	0.508197
SK_N_DZ_cytosolic_fraction	chr19	572213	572250	572238	-	High_confidence	14	14	83	2.283326	5.683665	chr19	572109	572238	SINE|Alu|AluJo	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.530120
SK_N_DZ_cytosolic_fraction	chrX	74000350	74000368	74000350	+	RAMPAGE_only	3	3	10	0.275100	2.947703	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.900000
SK_N_DZ_cytosolic_fraction	chr7	107580245	107580265	107580245	+	High_confidence	713	719	2689	73.974274	7.206893	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.915954
SK_N_DZ_cytosolic_fraction	chr3	47706418	47706438	47706418	-	RAMPAGE_only	2	2	9	0.247590	2.750000	chr3	47706169	47706371	SINE|Alu|AluSx	-	chr3	47678195	47701654	SMARCC1|ENST00000462198.5	-	47678195,47680436,47686048,47689386,47693240,47701277	47678311,47680508,47686170,47689424,47693300,47701654	0.888889
SK_N_DZ_cytosolic_fraction	chr18	36122259	36122266	36122265	-	High_confidence	3	5	7	0.192570	2.584963	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.857143
SK_N_DZ_cytosolic_fraction	chr10	55900132	55900190	55900132	-	High_confidence	4	4	18	0.495179	3.419382	chr10	55899641	55905708	LINE|L1|L1PA3	+	chr10	55840360	55900079	MSTRG.4060.1	-	55840360,55899633	55840479,55900079	0.833333
SK_N_DZ_cytosolic_fraction	chr8	75278812	75278833	75278812	-	High_confidence	11	13	23	0.632729	3.936260	chr8	75278367	75284402	LINE|L1|L1PA4	+	chr8	75223768	75278497	CASC9|ENST00000521147.1	-	75223768,75278356	75224358,75278497	0.826087
SK_N_DZ_cytosolic_fraction	chr5	116085461	116085473	116085461	+	High_confidence	5	6	12	0.330119	3.277613	chr5	116085484	116085794	DNA|hAT-Charlie|MER113	+	chr5	116085461	116293290	COMMD10|NM_001308080.1	+	116085461,116087496,116091078,116092544,116134067,116291516,116292450	116085606,116087587,116091189,116092700,116134178,116291576,116293290	0.500000
SK_N_DZ_cytosolic_fraction	chr15	91490669	91490674	91490673	+	RAMPAGE_only	38	38	67	1.843167	4.791700	chr15	91490540	91490900	LTR|ERVL-MaLR|MLT1A1	+	chr15	91463338	91494850	CRAT37|NR_110106.1	+	91463338,91473220,91489386,91493192	91463631,91473316,91489477,91494850	0.970149
SK_N_DZ_cytosolic_fraction	chr2	232551066	232551106	232551105	+	High_confidence	12	13	63	1.733127	5.445974	chr2	232551133	232551224	SINE|MIR|MIRb	+	chr2	232550806	232567205	EIF4E2|ENST00000454501.1	+	232550806,232556415,232557883,232564246,232566828,232567077	232551218,232556530,232558018,232564351,232566981,232567205	0.841270
SK_N_DZ_cytosolic_fraction	chr12	53427241	53427250	53427241	+	RAMPAGE_only	3	3	8	0.220080	2.500000	chr12	53427040	53427257	LINE|L2|L2a	-	chr12	53423934	53431473	AMHR2|ENST00000379791.7	+	53423934,53424287,53424708,53425164,53425454,53425688,53428895,53429452,53431176	53423983,53424470,53424900,53425242,53425573,53425919,53429010,53429625,53431473	1.000000
SK_N_DZ_cytosolic_fraction	chr8	116648883	116648917	116648883	-	RAMPAGE_only	4	4	20	0.550199	3.826875	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.950000
SK_N_DZ_cytosolic_fraction	chr5	23951343	23951372	23951371	+	High_confidence	33	35	210	5.777091	6.926620	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.852381
SK_N_DZ_cytosolic_fraction	chr3	139344535	139344573	139344547	+	High_confidence	214	214	721	19.834679	6.139380	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.958391
SK_N_DZ_cytosolic_fraction	chr14	73888270	73888271	73888270	+	High_confidence	8	8	8	0.220080	3.000000	chr14	73887908	73888375	LINE|L2|L2	-	chr14	73888249	73904035	ZNF410|ENST00000554582.5	+	73888249,73892026,73893796,73896347,73898070,73903959	73888364,73892208,73893932,73896534,73898262,73904035	1.000000
SK_N_DZ_cytosolic_fraction	chr2	74148407	74148449	74148407	+	High_confidence	3	3	22	0.605219	4.277613	chr2	74148357	74148636	LINE|L2|L2	-	chr2	74148044	74149988	BOLA3-AS1|ENST00000533563.1	+	74148044,74148349,74148697	74148223,74148478,74149988	0.954545
SK_N_DZ_cytosolic_fraction	chr21	33968463	33968491	33968463	-	High_confidence	7	9	21	0.577709	4.201841	chr21	33968191	33968612	LTR|ERVL-MaLR|MLT1J	-	chr21	33967100	33968573	AP000569.1|ENST00000607953.1	-	33967100,33968232	33967350,33968573	0.857143
SK_N_DZ_cytosolic_fraction	chr15	66354122	66354123	66354122	-	RAMPAGE_only	18	18	18	0.495179	3.614369	chr15	66354028	66355027	LINE|L2|L2a	+	chr15	66336383	66356685	TIPIN|ENST00000566524.5	-	66336383,66341149,66349059,66349314,66352128,66352814,66356638	66337181,66341356,66349123,66349437,66352207,66352955,66356685	1.000000
SK_N_DZ_cytosolic_fraction	chr10	102449836	102449845	102449844	+	High_confidence	8	8	32	0.880319	4.103728	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449852	102456293	RPARP-AS1|ENST00000492465.2	+	102449852,102450186,102451398,102452089,102455336	102450022,102450360,102451555,102452187,102456293	0.968750
SK_N_DZ_cytosolic_fraction	chr19	571276	571303	571301	+	High_confidence	9	17	29	0.797789	4.423252	chr19	571082	571344	LTR|ERV1|LTR10B	+	chr19	571309	583493	BSG|ENST00000346916.8	+	571309,580378,580645,581314,582305,582513,582749	571579,580461,580782,581591,582330,582582,583493	0.586207
SK_N_DZ_cytosolic_fraction	chr14	30474531	30474541	30474531	-	High_confidence	3	4	8	0.220080	2.750000	chr14	30474044	30480062	LINE|L1|L1PA3	+	chr14	30438005	30474227	G2E3-AS1|ENST00000550680.5	-	30438005,30473521,30474000	30438171,30473599,30474227	0.625000
SK_N_DZ_cytosolic_fraction	chr5	151958866	151958867	151958866	+	High_confidence	16	17	21	0.577709	3.921928	chr5	151958688	151959037	LTR|ERVL-MaLR|THE1B	+	chr5	151958897	152270445	LINC01933|ENST00000524034.5	+	151958897,152267264,152270194	151958954,152267355,152270445	0.857143
SK_N_DZ_cytosolic_fraction	chr4	61646802	61646858	61646857	+	RAMPAGE_only	10	12	53	1.458028	5.005946	chr4	61641294	61647303	LINE|L1|L1PA3	-	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.905660
SK_N_DZ_cytosolic_fraction	chr8	83912693	83912694	83912693	+	High_confidence	3467	3495	3794	104.372776	8.659788	chr8	83912425	83912831	LTR|ERVK|LTR14B	+	chr8	83912712	83980159	MSTRG.33863.7	+	83912712,83967327,83970925,83979924	83912835,83970900,83978766,83980159	0.654718
SK_N_DZ_cytosolic_fraction	chr7	26399417	26399448	26399442	-	High_confidence	13	16	50	1.375498	5.037880	chr7	26399411	26399720	DNA|hAT-Charlie|MER33	+	chr7	26372018	26399418	LOC105375304|NR_136272.1	-	26372018,26399340	26372568,26399418	0.660000
SK_N_DZ_cytosolic_fraction	chr9	99900920	99900921	99900920	-	RAMPAGE_only	7	7	9	0.247590	3.000000	chr9	99900764	99901118	LTR|ERVL-MaLR|THE1A	-	chr9	99886316	99906601	STX17-AS1|NR_038853.1	-	99886316,99894879,99906553	99886695,99895005,99906601	0.666667
SK_N_DZ_cytosolic_fraction	chr15	65576760	65577144	65577143	+	RAMPAGE_only	20	22	234	6.437330	5.511845	chr15	65577153	65577426	SINE|Alu|AluJr	+	chr15	65530488	65578355	HACD3|NM_016395.2	+	65530488,65551675,65554886,65556738,65558679,65562773,65564214,65570090,65571547,65572234,65576302	65530718,65551718,65554960,65556903,65558731,65562884,65564342,65570203,65571654,65572366,65578355	0.995726
SK_N_DZ_cytosolic_fraction	chr5	109383494	109383500	109383494	-	High_confidence	2	3	6	0.165060	2.584963	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
SK_N_DZ_cytosolic_fraction	chr22	26647077	26647092	26647077	+	High_confidence	5	5	10	0.275100	3.169925	chr22	26647119	26647175	SINE|MIR|MIR1_Amn	+	chr22	26647210	26665737	MIAT|ENST00000440347.5	+	26647210,26656031,26663315,26665530	26647340,26656154,26663398,26665737	0.500000
SK_N_DZ_cytosolic_fraction	chrX	15462957	15462974	15462973	-	RAMPAGE_only	6	6	15	0.412649	3.773557	chrX	15462843	15462976	LINE|L2|L2a	-	chrX	15384798	15493341	PIR|ENST00000380420.9	-	15384798,15390184,15397448,15407505,15425905,15455847,15459656,15479728,15491161,15493189	15385116,15390251,15397531,15407550,15425990,15456054,15459740,15479821,15491309,15493341	0.933333
SK_N_DZ_cytosolic_fraction	chr21	38121491	38121539	38121491	+	High_confidence	1025	1032	2314	63.658040	6.768985	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.939499
SK_N_DZ_cytosolic_fraction	chr1	17755324	17755340	17755334	+	High_confidence	8	9	16	0.440159	3.373557	chr1	17755152	17755695	LTR|ERVL|LTR41	+	chr1	17755312	17827063	ACTL8|NM_030812.2	+	17755312,17822984,17825766	17755504,17823356,17827063	0.937500
SK_N_DZ_cytosolic_fraction	chr9	122463980	122464021	122463980	+	High_confidence	9	10	24	0.660239	4.334963	chr9	122461383	122464408	LINE|L1|L1PB1	-	chr9	122464215	122464727	MSTRG.35506.1	+	122464215	122464727	0.708333
SK_N_DZ_cytosolic_fraction	chr3	128432223	128432233	128432232	+	High_confidence	7	8	27	0.742769	4.606739	chr3	128431714	128432547	LINE|L2|L2a	-	chr3	128432157	128434897	MSTRG.25217.1	+	128432157,128434078	128432367,128434897	0.925926
SK_N_DZ_cytosolic_fraction	chr15	51936194	51936203	51936194	-	RAMPAGE_only	6	8	22	0.605219	3.541446	chr15	51935784	51936413	LTR|ERVL|LTR50	-	chr15	51919072	51930627	AC090971.3|ENST00000557871.1	-	51919072,51921783,51922721,51924039,51925745,51926780,51928206,51929333,51930530	51919145,51921873,51922908,51924177,51925881,51926870,51928291,51929478,51930627	0.863636
SK_N_DZ_cytosolic_fraction	chr15	74738466	74738467	74738466	-	RAMPAGE_only	9	9	9	0.247590	2.947703	chr15	74738305	74738647	LTR|ERVL-MaLR|THE1B	-	chr15	74719541	74725610	CYP1A1|ENST00000379727.7	-	74719541,74720966,74721198,74721413,74721590,74722272,74725440	74720774,74721053,74721322,74721503,74721717,74723126,74725610	1.000000
SK_N_DZ_cytosolic_fraction	chr1	156752197	156752236	156752197	-	High_confidence	15	15	51	1.403008	4.946552	chr1	156752098	156752165	LINE|L2|L2c	-	chr1	156742106	156752232	HDGF|NM_001126051.1	-	156742106,156743651,156744162,156745007,156745296,156752037	156743455,156743878,156744348,156745146,156745373,156752232	1.000000
SK_N_DZ_cytosolic_fraction	chrX	74000298	74000315	74000298	+	RAMPAGE_only	4	4	12	0.330119	3.095795	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.916667
SK_N_DZ_cytosolic_fraction	chrX	152697654	152697655	152697654	-	RAMPAGE_only	20	20	20	0.550199	3.721928	chrX	152697622	152697771	LINE|L1|L1MEh	+	chrX	152574692	152639797	MSTRG.37052.1	-	152574692,152635881,152639603	152574980,152635987,152639797	0.900000
SK_N_DZ_cytosolic_fraction	chr1	113759891	113759899	113759898	-	High_confidence	5	6	9	0.247590	3.000000	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.555556
SK_N_DZ_cytosolic_fraction	chr3	49468650	49468676	49468650	+	High_confidence	2	3	7	0.192570	2.521641	chr3	49468531	49468836	SINE|Alu|AluSx1	-	chr3	49468702	49535618	DAG1|NM_001177643.2	+	49468702,49510418,49530796	49469055,49510819,49535618	0.714286
SK_N_DZ_cytosolic_fraction	chr11	65382679	65382702	65382701	-	High_confidence	4	4	9	0.247590	3.169925	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375191	65382674	SLC25A45|NM_001077241.2	-	65375191,65376817,65379375,65379866,65380131,65382485	65376675,65377076,65379561,65379938,65380175,65382674	0.666667
SK_N_DZ_cytosolic_fraction	chr12	86384071	86384110	86384071	+	High_confidence	496	566	1090	29.985853	6.579164	chr12	86383894	86384235	LTR|ERVL-MaLR|THE1B	+	chr12	86384092	86472247	MSTRG.8167.5	+	86384092,86462332,86469467,86470238	86384152,86462705,86469577,86472247	0.856881
SK_N_DZ_cytosolic_fraction	chr17	50834582	50834602	50834583	+	High_confidence	15	18	34	0.935339	4.852169	chr17	50834613	50834722	SINE|MIR|MIRb	+	chr17	50834649	50841308	WFIKKN2|ENST00000426127.1	+	50834649,50839498	50835032,50841308	0.588235
SK_N_DZ_cytosolic_fraction	chr7	87040212	87040223	87040222	-	High_confidence	62	65	180	4.951792	6.454219	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040226	MSTRG.32101.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040226	0.966667
SK_N_DZ_cytosolic_fraction	chr20	37298760	37298761	37298760	+	RAMPAGE_only	23	23	23	0.632729	3.762267	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
SK_N_DZ_cytosolic_fraction	chr2	97917848	97917860	97917857	-	RAMPAGE_only	2	2	8	0.220080	2.807355	chr2	97917810	97917935	LTR|ERVL|MER21C	-	chr2	97841814	97907246	TMEM131|ENST00000438715.1	-	97841814,97844144,97859303,97888051,97907114	97841937,97844261,97859427,97888120,97907246	0.875000
SK_N_DZ_cytosolic_fraction	chr4	173521336	173521337	173521336	+	RAMPAGE_only	5	5	8	0.220080	2.807355	chr4	173521322	173521435	DNA|hAT-Charlie|MER5A	+	chr4	173530461	173585739	HAND2-AS1|ENST00000645869.1	+	173530461,173536847,173582704,173584635	173530539,173536970,173583162,173585739	0.500000
SK_N_DZ_cytosolic_fraction	chr21	36005131	36005145	36005142	+	High_confidence	3	3	10	0.275100	2.947703	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.900000
SK_N_DZ_cytosolic_fraction	chr12	19945448	19945492	19945483	-	High_confidence	10	11	65	1.788147	4.877697	chr12	19945366	19945519	SINE|Alu|AluJb	+	chr12	19939781	19945741	MSTRG.7271.1	-	19939781,19945349,19945618	19941610,19945525,19945741	0.923077
SK_N_DZ_cytosolic_fraction	chr22	30975200	30975394	30975304	+	RAMPAGE_only	9	10	124	3.411235	4.482495	chr22	30975231	30975411	DNA|hAT-Charlie|Charlie15a	-	chr22	30972262	30976063	TUG1|ENST00000602393.1	+	30972262,30975169	30973601,30976063	0.991935
SK_N_DZ_cytosolic_fraction	chr2	13532917	13532923	13532917	-	High_confidence	15	15	37	1.017868	4.918781	chr2	13532711	13533096	LTR|ERV1|HERVE_a-int	-	chr2	13519496	13533266	MSTRG.19130.3	-	13519496,13523276,13532830	13521117,13523355,13533266	0.513514
SK_N_DZ_cytosolic_fraction	chr12	12927723	12927744	12927733	+	High_confidence	122	126	285	7.840338	7.240669	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.722807
SK_N_DZ_cytosolic_fraction	chr6	145736020	145736034	145736022	-	High_confidence	12	20	31	0.852809	4.696132	chr6	145735975	145736071	SINE|MIR|MIR3	+	chr6	145625352	145736023	EPM2A|ENST00000611340.5	-	145625352,145635244,145686121,145735995	145627693,145635486,145686296,145736023	0.677419
SK_N_DZ_cytosolic_fraction	chr3	186893444	186893489	186893444	+	RAMPAGE_only	6	6	33	0.907829	4.741364	chr3	186893219	186894186	LTR|ERVK|LTR5_Hs	+	chr3	186900197	186900557	RPS20P14|ENST00000412545.1	+	186900197	186900557	0.545455
SK_N_DZ_cytosolic_fraction	chr7	18395180	18395181	18395180	+	RAMPAGE_only	8	8	8	0.220080	3.000000	chr7	18395143	18395371	SINE|MIR|MIRc	+	chr7	18495709	18668843	HDAC9|NM_014707.3	+	18495709,18496261,18585280,18590344,18591515,18593907,18629349,18634626,18644670,18647784,18648465,18666212	18495854,18496324,18585522,18590486,18591642,18594029,18629481,18634742,18644793,18647998,18648683,18668843	1.000000
SK_N_DZ_cytosolic_fraction	chr11	89669198	89669212	89669198	+	High_confidence	22	22	76	2.090757	5.575225	chr11	89669149	89669296	SINE|MIR|MIRb	+	chr11	89669216	89676164	MSTRG.6449.3	+	89669216,89669404,89670389,89671886,89674086,89676104	89669255,89669503,89670475,89672006,89674169,89676164	0.644737
SK_N_DZ_cytosolic_fraction	chr6	139027938	139027939	139027938	+	High_confidence	7	7	8	0.220080	2.807355	chr6	139027595	139028041	LTR|ERVL-MaLR|MLT1M	-	chr6	139028681	139043302	ABRACL|ENST00000367660.3	+	139028681,139034154,139042718	139028875,139034221,139043302	0.750000
SK_N_DZ_cytosolic_fraction	chr5	23951650	23951674	23951673	+	High_confidence	7	9	18	0.495179	3.947703	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.777778
SK_N_DZ_cytosolic_fraction	chr1	93181125	93181137	93181125	-	High_confidence	3	3	7	0.192570	2.584963	chr1	93181034	93181174	SINE|Alu|FLAM_C	+	chr1	93149741	93180728	TMED5|ENST00000370282.7	-	93149741,93156299,93160128,93180053	93154888,93156483,93160226,93180728	0.571429
SK_N_DZ_cytosolic_fraction	chr17	50737462	50737479	50737462	+	RAMPAGE_only	2	3	6	0.165060	2.584963	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50744660	50750847	LUC7L3|ENST00000504065.5	+	50744660,50745719,50746541,50749218,50750500	50744813,50746003,50746702,50749344,50750847	0.500000
SK_N_DZ_cytosolic_fraction	chr12	123272479	123272498	123272479	-	High_confidence	2	2	16	0.440159	3.773557	chr12	123272425	123272523	LINE|L2|L2a	-	chr12	123261275	123272334	CDK2AP1|ENST00000544658.5	-	123261275,123265195,123267184,123272156	123261803,123265322,123267282,123272334	0.812500
SK_N_DZ_cytosolic_fraction	chr3	9377885	9377888	9377885	+	RAMPAGE_only	3	3	8	0.220080	2.500000	chr3	9377910	9378251	LINE|CR1|CR1_Mam	+	chr3	9383179	9384870	THUMPD3|ENST00000464045.1	+	9383179,9384211,9384523	9383309,9384335,9384870	1.000000
SK_N_DZ_cytosolic_fraction	chr14	46005710	46005711	46005710	+	RAMPAGE_only	9	9	12	0.330119	3.418296	chr14	46005510	46005879	LTR|ERVL-MaLR|THE1C	+	chr14	46064158	46501903	LINC00871|NR_102701.1	+	46064158,46210823,46211746,46438180,46449907,46501306	46064216,46210939,46211804,46438250,46449954,46501903	0.833333
SK_N_DZ_cytosolic_fraction	chr15	74156188	74156215	74156214	-	RAMPAGE_only	11	11	22	0.605219	4.106603	chr15	74156094	74156504	LTR|ERV1|MER92A	+	chr15	74152799	74179226	AC010931.3|ENST00000561647.1	-	74152799,74156126,74179155	74153205,74156203,74179226	0.863636
SK_N_DZ_cytosolic_fraction	chr11	61811820	61811821	61811820	-	High_confidence	8	8	8	0.220080	2.750000	chr11	61811607	61811887	SINE|Alu|AluSx1	-	chr11	61803425	61810885	FADS1|ENST00000539999.1	-	61803425,61803669,61804684,61806663,61810750	61803459,61803767,61804761,61806724,61810885	0.750000
SK_N_DZ_cytosolic_fraction	chr13	29647246	29647293	29647246	+	High_confidence	20	21	66	1.815657	5.308365	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647420	29655404	MSTRG.9007.2	+	29647420,29655069	29647724,29655404	0.878788
SK_N_DZ_cytosolic_fraction	chr11	10729289	10729338	10729289	-	RAMPAGE_only	10	10	86	2.365856	5.585978	chr11	10729274	10729483	LTR|ERVL|LTR67B	-	chr11	10573090	10693988	MRVI1|NM_001100163.2	-	10573090,10580454,10581866,10591547,10593491,10594145,10600917,10603119,10604404,10606741,10609727,10623777,10625965,10627715,10627972,10628750,10629537,10631990,10633967,10690264,10693535	10576575,10580589,10581986,10591612,10593599,10594195,10601059,10603251,10604545,10606772,10609851,10623856,10626583,10627760,10628025,10628828,10629711,10632061,10634071,10690369,10693988	0.500000
SK_N_DZ_cytosolic_fraction	chr22	50756830	50756882	50756881	+	High_confidence	5	5	17	0.467669	3.702820	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.529412
SK_N_DZ_cytosolic_fraction	chr16	27229197	27229222	27229197	-	RAMPAGE_only	3	3	12	0.330119	3.277613	chr16	27229101	27229466	LINE|L2|L2b	+	chr16	27225143	27230839	NSMCE1|ENST00000565384.1	-	27225143,27225725,27226719,27230590	27225236,27225846,27226836,27230839	0.583333
SK_N_DZ_cytosolic_fraction	chr18	6928498	6928502	6928501	-	High_confidence	4	4	8	0.220080	2.807355	chr18	6928222	6928872	LTR|ERV1|LTR9	+	chr18	6925477	6928572	LINC00668|ENST00000580197.5	-	6925477,6928119,6928436	6927584,6928219,6928572	0.875000
SK_N_DZ_cytosolic_fraction	chr16	24883825	24883880	24883879	+	RAMPAGE_only	5	5	17	0.467669	3.625000	chr16	24883440	24883939	LTR|ERVL-MaLR|MLT1H	-	chr16	24846230	24911628	SLC5A11|NM_052944.4	+	24846230,24858619,24862600,24869900,24872159,24875626,24877257,24884050,24890868,24897973,24906656,24907024,24907962,24908880,24910305,24911327	24846438,24858778,24862672,24870005,24872219,24875731,24877363,24884131,24891074,24898109,24906764,24907175,24908131,24909096,24910477,24911628	0.705882
SK_N_DZ_cytosolic_fraction	chrX	47658606	47658635	47658629	-	High_confidence	5	5	25	0.687749	2.968152	chrX	47658369	47658606	SINE|MIR|MIR	-	chrX	47651800	47659107	UXT|ENST00000485641.5	-	47651800,47652080,47657182,47657781,47658829	47651895,47652144,47657290,47657863,47659107	0.920000
SK_N_DZ_cytosolic_fraction	chr8	6407405	6407425	6407420	-	High_confidence	2	5	10	0.275100	2.947703	chr8	6407245	6407431	SINE|MIR|MIRb	-	chr8	6403550	6406548	AC016065.1|ENST00000500118.2	-	6403550,6405705	6405120,6406548	0.600000
SK_N_DZ_cytosolic_fraction	chr5	51678391	51678409	51678391	-	RAMPAGE_only	4	4	11	0.302610	3.459432	chr5	51678101	51678371	SINE|MIR|MIR	-	chr5	51480235	51664961	MSTRG.27852.3	-	51480235,51483868,51484753,51664613	51482240,51483975,51484860,51664961	0.727273
SK_N_DZ_cytosolic_fraction	chr21	45593653	45593654	45593653	+	High_confidence	122	126	163	4.484123	5.868995	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	0.944785
SK_N_DZ_cytosolic_fraction	chr14	50756826	50756845	50756844	-	RAMPAGE_only	3	4	8	0.220080	2.521641	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.875000
SK_N_DZ_cytosolic_fraction	chr11	64226142	64226180	64226142	-	High_confidence	108	109	591	16.258385	7.202364	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223798	64226150	TRPT1|ENST00000394547.7	-	64223798,64224099,64224284,64224542,64224800,64225498,64226049	64223967,64224210,64224341,64224717,64224970,64225580,64226150	0.893401
SK_N_DZ_cytosolic_fraction	chr2	27350389	27350390	27350389	-	RAMPAGE_only	15	15	18	0.495179	3.530493	chr2	27350219	27350401	DNA|hAT-Charlie|MER5A	+	chr2	27325848	27356492	GTF3C2|ENST00000359541.6	-	27325848,27327176,27328036,27328467,27328843,27329120,27329378,27333654,27333973,27335597,27335916,27336197,27337243,27337480,27337925,27341947,27342825,27343307,27356086	27326893,27327284,27328189,27328596,27328931,27329282,27329523,27333784,27333999,27335706,27336028,27336425,27337342,27337558,27338020,27342233,27343147,27343578,27356492	1.000000
SK_N_DZ_cytosolic_fraction	chr1	15236501	15236521	15236520	+	RAMPAGE_only	15	17	45	1.237948	5.106603	chr1	15236272	15236744	LTR|ERVL-MaLR|MLT1K	+	chr1	15247271	15398126	FHAD1|ENST00000358897.8	+	15247271,15251770,15272322,15289398,15296683,15301204,15308612,15313056,15316377,15317823,15324451,15327058,15328276,15329345,15341735,15345082,15345415,15349041,15352876,15358109,15360477,15362641,15365826,15367462,15369369,15374501,15375602,15380700,15381230,15382027,15397296	15247395,15251877,15272529,15289666,15296793,15301441,15308736,15313187,15316467,15317928,15324559,15327142,15328429,15329541,15341893,15345190,15345523,15349149,15352984,15358283,15360703,15362726,15365933,15367622,15369502,15374631,15375730,15380796,15381451,15382193,15398126	0.622222
SK_N_DZ_cytosolic_fraction	chr4	70993073	70993074	70993073	+	High_confidence	18	18	18	0.495179	3.947703	chr4	70992983	70993102	SINE|MIR|MIR	+	chr4	70992792	71030914	MSTRG.26641.7	+	70992792,70993731,70998066,71022366,71023558,71025815,71026664,71029351	70993078,70993926,70998182,71022560,71023706,71025931,71026755,71030914	1.000000
SK_N_DZ_cytosolic_fraction	chr2	165003993	165003994	165003993	+	RAMPAGE_only	5	5	8	0.220080	3.000000	chr2	165003791	165004055	DNA|hAT-Charlie|MER1B	+	chr2	164992156	165208261	AC019197.1|ENST00000629817.2	+	164992156,164993460,165091119,165130044,165139598,165194895,165208112	164992168,164993640,165091299,165130204,165139709,165195083,165208261	0.625000
SK_N_DZ_cytosolic_fraction	chr6	82101686	82101700	82101686	-	RAMPAGE_only	7	8	13	0.357629	3.084963	chr6	82101303	82107312	LINE|L1|L1PA2	+	chr6	81845184	81933480	LINC02542|ENST00000418567.1	-	81845184,81928856,81933428	81845909,81928901,81933480	0.846154
SK_N_DZ_cytosolic_fraction	chr14	77723182	77723211	77723182	-	RAMPAGE_only	2	3	8	0.220080	2.807355	chr14	77722838	77723146	SINE|Alu|AluY	-	chr14	77717598	77761154	SNW1|NM_012245.2	-	77717598,77718366,77720710,77723180,77730987,77732484,77734946,77735936,77736970,77738777,77738965,77751318,77754966,77761113	77718286,77718530,77720828,77723277,77731129,77732601,77735012,77736006,77737075,77738884,77739061,77751480,77755120,77761154	0.875000
SK_N_DZ_cytosolic_fraction	chr4	164351209	164351241	164351213	-	RAMPAGE_only	10	10	30	0.825299	4.487123	chr4	164350749	164356776	LINE|L1|L1PA2	+	chr4	163526970	164384035	MARCH1|ENST00000514618.5	-	163526970,163545595,163585748,163612270,163613313,163700812,163854020,163988500,164111587,164383869	163529046,163545743,163585929,163613038,163613393,163700863,163854169,163988709,164111662,164384035	0.666667
SK_N_DZ_cytosolic_fraction	chr2	176732049	176732066	176732052	-	High_confidence	84	84	247	6.794959	6.205902	chr2	176731884	176732237	LTR|ERVL-MaLR|MLT1B	-	chr2	176723657	176732038	MSTRG.20815.1	-	176723657,176731953	176724455,176732038	0.708502
SK_N_DZ_cytosolic_fraction	chr1	43361195	43361221	43361195	+	RAMPAGE_only	3	3	13	0.357629	2.855389	chr1	43361240	43361490	LINE|L2|L2	+	chr1	43359012	43363203	CDC20|ENST00000372462.1	+	43359012,43359489,43359724,43359968,43360192,43360498,43360732,43361119,43362194,43362950	43359396,43359638,43359821,43360097,43360389,43360593,43360961,43361245,43362312,43363203	0.923077
SK_N_DZ_cytosolic_fraction	chr8	17910038	17910062	17910038	-	High_confidence	3	3	7	0.192570	2.807355	chr8	17908095	17912373	LTR|ERVK|HERVK-int	-	chr8	17864379	17910365	FGL1|ENST00000398056.6	-	17864379,17868547,17868915,17874018,17874361,17881998,17885491,17895446,17896169,17909884	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17895517,17896416,17910365	0.571429
SK_N_DZ_cytosolic_fraction	chr6	33844003	33844019	33844003	+	High_confidence	612	613	1138	31.306331	5.274463	chr6	33843810	33844169	LTR|ERVL-MaLR|THE1B	+	chr6	33843983	33846832	MSTRG.29935.1	+	33843983,33845608	33844085,33846832	0.978910
SK_N_DZ_cytosolic_fraction	chr1	166850105	166850135	166850134	+	RAMPAGE_only	2	2	7	0.192570	2.807355	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
SK_N_DZ_cytosolic_fraction	chr2	177222715	177222925	177222715	+	RAMPAGE_only	6	7	96	2.640956	5.321418	chr2	177222525	177222789	SINE|Alu|AluJb	+	chr2	177212748	177223958	HNRNPA3|ENST00000411529.6	+	177212748,177215538,177215749,177215977,177216502,177216675,177216859,177217704,177219036,177219246,177219407	177212805,177215661,177215896,177216188,177216592,177216771,177216940,177217845,177219159,177219314,177223958	1.000000
SK_N_DZ_cytosolic_fraction	chr16	30499535	30499558	30499550	-	High_confidence	25	25	82	2.255816	5.242408	chr16	30499510	30499629	SINE|MIR|MIR1_Amn	+	chr16	30498765	30499554	AC116348.2|ENST00000563751.1	-	30498765,30499363	30499151,30499554	0.829268
SK_N_DZ_cytosolic_fraction	chr7	42960816	42960820	42960816	-	RAMPAGE_only	5	5	9	0.247590	2.500000	chr7	42960777	42961015	LTR|ERV1|HERV35I-int	-	chr7	42954134	42963343	AC005537.1|ENST00000588324.1	-	42954134,42955376,42955954,42959928,42961338,42962967	42954485,42955457,42956132,42959990,42961528,42963343	0.666667
SK_N_DZ_cytosolic_fraction	chr14	27673215	27673253	27673239	-	High_confidence	3	3	9	0.247590	2.750000	chr14	27673059	27679095	LINE|L1|L1PA3	+	chr14	27321825	27673221	AL390334.1|ENST00000554904.5	-	27321825,27656442,27673028	27322141,27656502,27673221	0.888889
SK_N_DZ_cytosolic_fraction	chr21	33945809	33945810	33945809	-	RAMPAGE_only	72	72	72	1.980717	4.100627	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
SK_N_DZ_cytosolic_fraction	chr7	101217578	101217595	101217578	-	High_confidence	16	16	50	1.375498	5.175735	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.980000
SK_N_DZ_cytosolic_fraction	chr12	5121976	5121997	5121988	+	High_confidence	12	12	44	1.210438	4.925119	chr12	5116426	5122428	LINE|L1|L1PA2	-	chr12	5122010	5174336	MSTRG.7011.1	+	5122010,5160306,5169806,5171808,5173013	5122437,5160385,5169879,5171889,5174336	0.772727
SK_N_DZ_cytosolic_fraction	chr4	176875692	176875709	176875692	+	High_confidence	2	2	12	0.330119	3.022055	chr4	176875737	176875796	DNA|hAT-Tip100|MER115	+	chr4	176875701	176880605	LINC02509|ENST00000508790.1	+	176875701,176880066	176875853,176880605	0.666667
SK_N_DZ_cytosolic_fraction	chr12	100398895	100398896	100398895	+	RAMPAGE_only	336	342	471	12.957190	5.923549	chr12	100398705	100399070	LTR|ERVL-MaLR|THE1B	+	chr12	100357078	100422059	SLC17A8|ENST00000323346.9	+	100357078,100380700,100391000,100393368,100396329,100401776,100402339,100402595,100404037,100412769,100418028,100419814	100357492,100380953,100391119,100393483,100396417,100401863,100402479,100402745,100404170,100412880,100418156,100422059	0.811040
SK_N_DZ_cytosolic_fraction	chr12	5122064	5122065	5122064	+	High_confidence	10	10	13	0.357629	3.584963	chr12	5116426	5122428	LINE|L1|L1PA2	-	chr12	5122010	5174336	MSTRG.7011.1	+	5122010,5160306,5169806,5171808,5173013	5122437,5160385,5169879,5171889,5174336	0.538462
SK_N_DZ_cytosolic_fraction	chr20	416907	416908	416907	+	RAMPAGE_only	8	8	8	0.220080	2.750000	chr20	416717	416994	SINE|Alu|AluJr	+	chr20	409883	419642	RBCK1|ENST00000414880.1	+	409883,417219,417525,417731,419346,419557	410025,417342,417619,417930,419468,419642	0.625000
SK_N_DZ_cytosolic_fraction	chr2	11681424	11681437	11681436	+	High_confidence	371	399	830	22.833264	6.891622	chr2	11681255	11681626	LTR|ERVL-MaLR|MSTA	+	chr2	11681459	11683323	AC106875.1|ENST00000455754.1	+	11681459,11682297	11681492,11683323	0.898795
SK_N_DZ_cytosolic_fraction	chr7	87039792	87039870	87039797	-	High_confidence	20	26	82	2.255816	5.776947	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040226	MSTRG.32101.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040226	0.975610
SK_N_DZ_cytosolic_fraction	chr19	17336685	17336727	17336685	+	High_confidence	21	22	45	1.237948	4.817053	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.844444
SK_N_DZ_cytosolic_fraction	chr11	62911653	62911673	62911653	+	RAMPAGE_only	5	5	15	0.412649	3.323231	chr11	62911552	62911739	SINE|MIR|MIRb	-	chr11	62909545	62918361	AP000438.1|ENST00000543624.1	+	62909545,62910602,62917925	62909615,62910845,62918361	0.866667
SK_N_DZ_cytosolic_fraction	chr12	92364811	92364832	92364831	-	High_confidence	7	7	14	0.385139	3.664498	chr12	92364804	92364909	DNA|hAT-Charlie|MER5B	-	chr12	92247755	92363832	LINC02391|ENST00000615716.1	-	92247755,92268920,92272535,92357530,92363590	92248029,92268979,92272616,92357674,92363832	0.571429
SK_N_DZ_cytosolic_fraction	chr8	21885847	21885864	21885854	-	High_confidence	150	175	474	13.039720	7.499081	chr8	21885854	21885979	LINE|L2|L2a	+	chr8	21849999	21885850	MSTRG.33283.1	-	21849999,21856455,21857795,21861146,21885698	21850363,21856642,21857925,21861373,21885850	0.641350
SK_N_DZ_cytosolic_fraction	chr1	40456973	40456996	40456995	+	RAMPAGE_only	3	3	9	0.247590	2.947703	chr1	40456917	40457007	DNA|TcMar-Tigger|Tigger19b	-	chr1	40450664	40463718	ZFP69B|NM_023070.2	+	40450664,40454202,40456944,40457343,40462420	40451088,40454288,40457071,40457439,40463718	1.000000
SK_N_DZ_cytosolic_fraction	chr5	85663561	85663603	85663602	+	High_confidence	17	20	45	1.237948	5.044326	chr5	85657593	85663641	LINE|L1|L1PA2	-	chr5	85663581	85667103	MSTRG.28222.3	+	85663581,85664377,85666918	85663902,85664468,85667103	0.533333
SK_N_DZ_cytosolic_fraction	chr1	223935755	223935756	223935755	-	RAMPAGE_only	10	11	11	0.302610	3.321928	chr1	223935575	223935956	LTR|ERVL-MaLR|THE1C	-	chr1	223779892	223845972	TP53BP2|NM_005426.2	-	223779892,223784114,223789007,223792388,223793302,223795814,223798214,223799898,223800699,223802115,223802730,223803270,223804173,223806845,223810430,223814239,223818205,223821219,223845653	223780894,223784314,223789174,223792522,223793440,223796590,223798677,223800047,223800810,223802344,223802895,223803452,223804348,223806947,223810513,223814353,223818337,223821367,223845972	0.818182
SK_N_DZ_cytosolic_fraction	chr4	102431154	102431180	102431179	-	High_confidence	5	5	11	0.302610	3.277613	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	1.000000
SK_N_DZ_cytosolic_fraction	chr7	134432378	134432458	134432378	-	High_confidence	134	147	767	21.100137	6.044736	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.685789
SK_N_DZ_cytosolic_fraction	chr6	63805722	63805745	63805744	+	High_confidence	4	4	12	0.330119	3.584963	chr6	63805602	63805978	LTR|ERVL-MaLR|THE1D	+	chr6	63805760	63823277	MSTRG.30257.1	+	63805760,63821239	63805896,63823277	1.000000
SK_N_DZ_cytosolic_fraction	chr8	11795569	11795571	11795569	+	High_confidence	81	118	159	4.374083	5.118892	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.955975
SK_N_DZ_cytosolic_fraction	chr17	28327149	28327339	28327260	+	RAMPAGE_only	31	31	149	4.098984	5.875912	chr17	28326964	28327270	SINE|Alu|AluSz6	-	chr17	28319454	28328225	TMEM97|ENST00000336687.6	+	28319454,28324689,28325502,28326533	28319697,28324724,28325647,28328225	1.000000
SK_N_DZ_cytosolic_fraction	chr12	15894114	15894139	15894133	+	RAMPAGE_only	2	3	9	0.247590	2.750000	chr12	15894177	15894470	SINE|Alu|AluSz	+	chr12	15897944	15903340	STRAP|ENST00000538718.1	+	15897944,15899903,15902916	15898018,15900053,15903340	0.888889
SK_N_DZ_cytosolic_fraction	chr17	2672709	2672740	2672739	+	High_confidence	2	2	7	0.192570	2.584963	chr17	2672787	2673082	SINE|Alu|AluSq2	+	chr17	2673664	2682348	PAFAH1B1|ENST00000571495.1	+	2673664,2676504,2680163,2681728	2674288,2676606,2680320,2682348	0.857143
SK_N_DZ_cytosolic_fraction	chr12	50763475	50763509	50763491	+	High_confidence	5	5	15	0.412649	3.664498	chr12	50763350	50763657	SINE|Alu|AluJo	+	chr12	50763709	50814192	ATF1|ENST00000552510.5	+	50763709,50780139,50795908,50809455,50814009	50763741,50780238,50796009,50809589,50814192	0.800000
SK_N_DZ_cytosolic_fraction	chr11	3380960	3380961	3380960	+	High_confidence	211	218	222	6.107210	6.809922	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.648649
SK_N_DZ_cytosolic_fraction	chr2	222599985	222600015	222600014	-	RAMPAGE_only	2	2	8	0.220080	2.521641	chr2	222599989	222600062	LINE|RTE-BovB|MamRTE1	-	chr2	222570609	222656085	MSTRG.21364.2	-	222570609,222599927,222613810,222619644,222623649,222624271,222624713,222628836,222630112,222631603,222633198,222634390,222639579,222640861,222642850,222646800,222648739,222656015	222572022,222600083,222613928,222619737,222623730,222624479,222624775,222628888,222630174,222631674,222633307,222634541,222639695,222640931,222643005,222646996,222648795,222656085	0.875000
SK_N_DZ_cytosolic_fraction	chr7	102666113	102666114	102666113	-	RAMPAGE_only	7	7	7	0.192570	2.521641	chr7	102665997	102666381	LTR|ERVL-MaLR|MSTA	-	chr7	102532820	102671601	MSTRG.32376.11	-	102532820,102631908,102638713,102639122,102640203,102640611,102666076,102667089,102668914,102671551	102533400,102637633,102638834,102639199,102640414,102640773,102666163,102667264,102669004,102671601	1.000000
SK_N_DZ_cytosolic_fraction	chr7	18821348	18821376	18821348	-	High_confidence	4	6	17	0.467669	3.852169	chr7	18820899	18821302	LTR|ERVL-MaLR|MLT1A1	-	chr7	18791170	18821513	MSTRG.31376.4	-	18791170,18800707,18803524,18810122,18820978	18793496,18800805,18805863,18810172,18821513	0.529412
SK_N_DZ_cytosolic_fraction	chr21	8864060	8864082	8864081	+	RAMPAGE_only	2	2	6	0.165060	2.584963	chr21	8864120	8864411	SINE|Alu|AluY	+	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	1.000000
SK_N_DZ_cytosolic_fraction	chr17	77390271	77390291	77390271	+	RAMPAGE_only	12	13	36	0.990358	4.113362	chr17	77390212	77390366	SINE|Alu|AluYc	+	chr17	77380122	77402483	SEPT9|ENST00000589140.1	+	77380122,77402058	77380249,77402483	0.805556
SK_N_DZ_cytosolic_fraction	chr12	31117716	31117758	31117716	-	High_confidence	4	5	17	0.467669	3.405639	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.941176
SK_N_DZ_cytosolic_fraction	chr19	5680228	5680249	5680234	-	High_confidence	11	11	52	1.430518	4.983809	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.961538
SK_N_DZ_cytosolic_fraction	chr18	36805392	36805415	36805392	-	RAMPAGE_only	3	3	20	0.550199	3.576618	chr18	36805277	36805349	LINE|L2|L2b	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.900000
SK_N_DZ_cytosolic_fraction	chr16	66933715	66933742	66933741	-	High_confidence	4	5	18	0.495179	2.974938	chr16	66933740	66933879	SINE|MIR|MIRb	+	chr16	66932064	66934250	CIAO2B|ENST00000568572.5	-	66932064,66932271,66932779,66933613,66933986,66934222	66932201,66932300,66932825,66933739,66934066,66934250	0.833333
SK_N_DZ_cytosolic_fraction	chr1	84583328	84583329	84583328	-	High_confidence	211	213	286	7.867848	6.712365	chr1	84583111	84583698	LTR|ERV1|LTR9	+	chr1	84498349	84583349	MSTRG.1525.4	-	84498349,84501825,84554346,84563256,84563734,84565840,84570581,84582277,84582856	84498548,84501970,84555199,84563418,84563832,84566012,84570720,84582358,84583349	0.797203
SK_N_DZ_cytosolic_fraction	chr20	18793970	18793987	18793975	-	High_confidence	6	6	21	0.577709	3.975418	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18787970	18793982	LINC00652|NR_026884.1	-	18787970,18789573,18793664	18788898,18789709,18793982	1.000000
SK_N_DZ_cytosolic_fraction	chr17	41996322	41996415	41996322	-	RAMPAGE_only	7	9	38	1.045378	4.859641	chr17	41996098	41996284	SINE|MIR|MIRc	-	chr17	41981983	41988873	DNAJC7|ENST00000586335.1	-	41981983,41982254,41983562,41987594,41987818,41988731	41982007,41982401,41983636,41987694,41987910,41988873	0.631579
SK_N_DZ_cytosolic_fraction	chrX	143040217	143040271	143040249	+	RAMPAGE_only	10	10	41	1.127908	5.221928	chrX	143040080	143040437	LTR|ERVL-MaLR|MLT1B	+	chrX	143042819	143045102	MSTRG.36999.1	+	143042819	143045102	0.512195
SK_N_DZ_cytosolic_fraction	chr4	41359591	41359607	41359606	+	High_confidence	58	67	96	2.640956	4.555932	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.989583
SK_N_DZ_cytosolic_fraction	chr9	127451050	127451128	127451104	-	High_confidence	25	25	82	2.255816	5.231896	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447679	127451373	MSTRG.35584.4	-	127447679,127447876,127448336,127449280,127449609,127451280	127447726,127447989,127448423,127449362,127450804,127451373	1.000000
SK_N_DZ_cytosolic_fraction	chr6	43013392	43013393	43013392	-	High_confidence	61	61	72	1.980717	5.322080	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.958333
SK_N_DZ_cytosolic_fraction	chr8	57978399	57978422	57978399	+	High_confidence	40	43	98	2.695976	4.620328	chr8	57978204	57978556	LTR|ERVL-MaLR|THE1A	+	chr8	57978357	57984126	LINC01602|ENST00000522992.1	+	57978357,57980893,57982265	57978484,57981014,57984126	0.918367
SK_N_DZ_cytosolic_fraction	chr3	9391714	9391740	9391714	-	RAMPAGE_only	4	4	13	0.357629	3.180833	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9385835	9397496	MSTRG.23926.25	-	9385835,9388086,9390279,9397423	9385923,9388127,9391826,9397496	0.923077
SK_N_DZ_cytosolic_fraction	chr5	65561552	65561560	65561552	-	High_confidence	4	4	8	0.220080	2.807355	chr5	65561451	65561591	LTR|ERVL-MaLR|MLT1A0	+	chr5	65528463	65561535	CENPK|ENST00000505960.5	-	65528463,65528918,65529116,65542801,65551105,65551563,65552492,65554796,65561462	65528578,65529017,65529199,65542848,65551242,65551636,65552549,65554946,65561535	0.500000
SK_N_DZ_cytosolic_fraction	chr4	75127251	75127272	75127251	-	RAMPAGE_only	7	7	17	0.467669	3.577820	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.823529
SK_N_DZ_cytosolic_fraction	chr16	71894419	71894435	71894419	+	High_confidence	4	5	9	0.247590	3.000000	chr16	71894254	71894545	SINE|Alu|AluSp	-	chr16	71894407	71930639	IST1|NM_001270976.1	+	71894407,71894720,71915625,71916461,71917046,71920738,71921342,71922473,71923287,71924768,71927613	71894481,71894858,71915728,71916642,71917134,71920822,71921453,71922680,71923380,71924817,71930639	0.555556
SK_N_DZ_cytosolic_fraction	chr13	110179280	110179289	110179288	-	RAMPAGE_only	4	4	8	0.220080	2.521641	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	0.875000
SK_N_DZ_cytosolic_fraction	chr14	102235451	102235472	102235451	-	High_confidence	2	2	12	0.330119	3.095795	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.833333
SK_N_DZ_cytosolic_fraction	chr6	26474333	26474346	26474345	+	RAMPAGE_only	9	10	28	0.770279	4.606739	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.571429
SK_N_DZ_cytosolic_fraction	chr7	18821042	18821139	18821138	-	High_confidence	200	200	830	22.833264	8.106875	chr7	18820899	18821302	LTR|ERVL-MaLR|MLT1A1	-	chr7	18790918	18821512	MSTRG.31376.3	-	18790918,18800707,18803524,18820978	18793496,18800805,18805863,18821512	0.625301
SK_N_DZ_cytosolic_fraction	chr12	93773407	93773433	93773411	+	RAMPAGE_only	12	13	68	1.870677	3.866794	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.882353
SK_N_DZ_cytosolic_fraction	chr17	8384039	8384054	8384046	-	High_confidence	3	3	8	0.220080	2.807355	chr17	8384033	8384050	SINE|Alu|AluSq	-	chr17	8377515	8383250	RPL26|ENST00000293842.10	-	8377515,8379795,8382142,8383156	8377692,8379936,8382315,8383250	0.750000
SK_N_DZ_cytosolic_fraction	chr7	105600825	105600892	105600891	-	High_confidence	10	10	31	0.852809	4.631616	chr7	105600681	105601093	LTR|ERVL-MaLR|THE1D	-	chr7	105567101	105600875	EFCAB10|ENST00000490493.1	-	105567101,105569202,105569406,105591304,105600763	105567490,105569290,105569571,105591391,105600875	0.806452
SK_N_DZ_cytosolic_fraction	chr8	143039446	143039483	143039459	+	High_confidence	6	6	33	0.907829	4.208409	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039294	143059942	C8orf31|ENST00000519775.2	+	143039294,143047678,143049208,143059652	143039569,143047814,143049298,143059942	0.696970
SK_N_DZ_cytosolic_fraction	chr6	145816720	145816729	145816725	-	High_confidence	34	37	73	2.008227	5.194904	chr6	145816416	145816805	LTR|ERV1|MER57B1	+	chr6	145798142	145816733	MSTRG.30909.2	-	145798142,145804371,145816636	145800309,145806421,145816733	0.958904
SK_N_DZ_cytosolic_fraction	chr16	65053853	65053854	65053853	-	RAMPAGE_only	4	4	7	0.192570	2.584963	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.857143
SK_N_DZ_cytosolic_fraction	chr12	6886592	6886596	6886595	-	RAMPAGE_only	6	6	12	0.330119	3.027169	chr12	6885859	6886821	LTR|ERVK|LTR5_Hs	-	chr12	6875763	6889358	SPSB2|ENST00000437851.1	-	6875763,6877498,6882189,6889305	6875914,6877600,6882287,6889358	0.666667
SK_N_DZ_cytosolic_fraction	chr10	33813364	33813403	33813364	-	RAMPAGE_only	6	6	20	0.550199	3.681881	chr10	33813190	33813552	LTR|ERVL-MaLR|THE1B	-	chr10	33759712	33772680	LINC00838|NR_038932.1	-	33759712,33765749,33772182	33760575,33767346,33772680	0.500000
SK_N_DZ_cytosolic_fraction	chr22	36482011	36482036	36482035	-	High_confidence	3	3	11	0.302610	3.121928	chr22	36481702	36481993	SINE|Alu|AluSc	-	chr22	36467035	36482030	TXN2|ENST00000216185.6	-	36467035,36476732,36480574,36481563	36467917,36476856,36480837,36482030	0.909091
SK_N_DZ_cytosolic_fraction	chr2	216107402	216107462	216107402	+	High_confidence	8	8	43	1.182928	5.211211	chr2	216107336	216107624	SINE|Alu|AluJo	+	chr2	216107463	216206303	XRCC5|ENST00000392133.7	+	216107463,216107652,216109090,216113015,216116658,216117745,216119042,216122061,216125916,216127535,216130874,216132324,216137087,216138088,216141185,216148082,216160067,216161978,216190224,216192638,216194918,216204321,216205187	216107532,216107698,216109457,216113129,216116842,216117794,216119165,216122253,216126031,216127674,216130987,216132387,216137225,216138179,216141319,216148276,216160161,216162048,216190334,216192735,216194986,216204396,216206303	0.930233
SK_N_DZ_cytosolic_fraction	chr2	200888587	200888628	200888587	-	High_confidence	4	5	18	0.495179	4.058814	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.833333
SK_N_DZ_cytosolic_fraction	chr18	46087102	46087132	46087118	-	High_confidence	4	4	16	0.440159	3.500000	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.687500
SK_N_DZ_cytosolic_fraction	chr1	114705716	114705839	114705716	-	RAMPAGE_only	9	10	71	1.953207	4.641387	chr1	114705629	114705788	SINE|Alu|AluSx3	-	chr1	114704463	114716894	NRAS|NM_002524.4	-	114704463,114708153,114708530,114709568,114713799,114716049,114716657	114708050,114708192,114708654,114709728,114713978,114716177,114716894	1.000000
SK_N_DZ_cytosolic_fraction	chr14	95307954	95307957	95307954	-	High_confidence	3	3	8	0.220080	2.750000	chr14	95307871	95307996	SINE|MIR|MIRb	+	chr14	95213319	95307773	CLMN|ENST00000555615.1	-	95213319,95215640,95221690,95223759,95230071,95307513	95213409,95215733,95221774,95223855,95230133,95307773	0.625000
SK_N_DZ_cytosolic_fraction	chr11	72111411	72111425	72111411	-	High_confidence	4	5	15	0.412649	3.128085	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.933333
SK_N_DZ_cytosolic_fraction	chr12	6250455	6250532	6250492	-	High_confidence	38	39	322	8.858206	6.515952	chr12	6250404	6250724	LTR|ERVL|LTR105_Mam	+	chr12	6238309	6250505	MSTRG.7030.1	-	6238309,6242894,6248222,6250376	6239833,6243450,6248365,6250505	0.860248
SK_N_DZ_cytosolic_fraction	chr7	148383844	148383855	148383854	+	RAMPAGE_only	3	3	11	0.302610	3.121928	chr7	148383900	148384003	SINE|MIR|MIR	+	chr7	148381392	148417844	CNTNAP2|ENST00000636399.1	+	148381392,148383648,148409390,148415416	148381592,148383888,148409471,148417844	0.909091
SK_N_DZ_cytosolic_fraction	chr3	135965723	135965773	135965723	+	High_confidence	18	23	161	4.429103	6.013702	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.993789
SK_N_DZ_cytosolic_fraction	chr4	140267872	140267928	140267885	+	High_confidence	10	10	73	2.008227	4.427887	chr4	140267433	140267902	LTR|ERVL|LTR33A_	+	chr4	140267623	140269668	MSTRG.27125.2	+	140267623,140269385	140267981,140269668	0.958904
SK_N_DZ_cytosolic_fraction	chr12	104030726	104030727	104030726	+	High_confidence	99	99	117	3.218665	5.724313	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030728	104031543	MSTRG.8354.1	+	104030728,104030917	104030852,104031543	0.897436
SK_N_DZ_cytosolic_fraction	chr3	44729826	44729827	44729826	+	High_confidence	9	9	11	0.302610	2.913977	chr3	44729868	44730030	SINE|MIR|MIRc	+	chr3	44729605	44737083	ZNF501|NM_145044.3	+	44729605,44731475,44734196	44729722,44731560,44737083	0.818182
SK_N_DZ_cytosolic_fraction	chr10	55900017	55900059	55900027	-	High_confidence	21	22	91	2.503406	5.845546	chr10	55899641	55905708	LINE|L1|L1PA3	+	chr10	55840360	55900079	MSTRG.4060.1	-	55840360,55899633	55840479,55900079	0.648352
SK_N_DZ_cytosolic_fraction	chr1	150340446	150340468	150340467	+	RAMPAGE_only	2	2	6	0.165060	2.584963	chr1	150340511	150340594	DNA|hAT-Charlie|MER3	+	chr1	150343150	150344375	PRPF3|ENST00000493553.1	+	150343150,150344161	150343452,150344375	0.500000
SK_N_DZ_cytosolic_fraction	chr2	26242852	26242853	26242852	+	High_confidence	6	6	7	0.192570	2.584963	chr2	26242755	26243050	SINE|Alu|AluY	-	chr2	26243169	26278620	HADHB|ENST00000448743.5	+	26243169,26254246,26254429,26263379,26269952,26273650,26277072,26278613	26243269,26254318,26254474,26263479,26269997,26273750,26277160,26278620	0.571429
SK_N_DZ_cytosolic_fraction	chr7	8233160	8233161	8233160	-	RAMPAGE_only	10	10	10	0.275100	3.121928	chr7	8233000	8233142	SINE|MIR|MIR1_Amn	-	chr7	8113922	8235926	ICA1|ENST00000422063.6	-	8113922,8127872,8138839,8138984,8141764,8141968,8143874,8157115,8158526,8218304,8221274,8228600,8232589,8235909	8114044,8128142,8138881,8139047,8141817,8142055,8143972,8157214,8158652,8218503,8221398,8228673,8232755,8235926	0.900000
SK_N_DZ_cytosolic_fraction	chr7	74452446	74452465	74452446	+	High_confidence	5	5	17	0.467669	4.000000	chr7	74452254	74452948	LTR|ERV1|LTR8B	-	chr7	74452467	74602583	MSTRG.31971.1	+	74452467,74508074,74512829,74515440,74518138,74519408,74521207,74524070,74529733,74535112,74536166,74538135,74538679,74539878,74544754,74545743,74547102,74555173,74555437,74557638,74558860,74559626,74589850,74590824,74595013,74601043,74602364	74452500,74508203,74512971,74515596,74518322,74519719,74521297,74524154,74529917,74535138,74536275,74538173,74538760,74539968,74544802,74545809,74547286,74555223,74555494,74557722,74559044,74559655,74589928,74591017,74595051,74601180,74602583	0.823529
SK_N_DZ_cytosolic_fraction	chrX	19349934	19349984	19349981	+	RAMPAGE_only	2	3	11	0.302610	3.121928	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19355317	19359025	PDHA1|ENST00000481733.1	+	19355317,19355685,19357651,19358915	19355504,19355757,19357719,19359025	0.636364
SK_N_DZ_cytosolic_fraction	chr18	32637994	32637997	32637994	+	RAMPAGE_only	116	122	237	6.519860	6.015822	chr18	32637813	32638169	LTR|ERVL-MaLR|THE1B	+	chr18	32470287	32745567	AC025887.2|ENST00000646805.1	+	32470287,32517823,32560634,32561412,32737350,32740789,32742851	32470338,32518131,32560964,32561539,32738693,32740926,32745567	0.970464
SK_N_DZ_cytosolic_fraction	chr1	84583019	84583020	84583019	-	High_confidence	6	6	6	0.165060	2.584963	chr1	84582895	84583073	SINE|MIR|MIRb	-	chr1	84554852	84583349	MSTRG.1525.9	-	84554852,84563256,84563734,84565840,84569930,84570581,84582277,84583137	84555199,84563418,84563832,84566012,84570139,84570720,84582358,84583349	0.500000
SK_N_DZ_cytosolic_fraction	chr3	108125046	108125048	108125047	+	High_confidence	6	9	13	0.357629	3.251629	chr3	108124858	108125222	LTR|ERVL-MaLR|THE1C	+	chr3	108125063	108138610	LINC01215|NR_110030.1	+	108125063,108136313	108125142,108138610	0.615385
SK_N_DZ_cytosolic_fraction	chr12	49994136	49994154	49994153	-	RAMPAGE_only	2	2	9	0.247590	2.500000	chr12	49994071	49994113	LINE|L2|L2b	-	chr12	49976922	49992358	RACGAP1|ENST00000548961.5	-	49976922,49991997,49992244	49977059,49992133,49992358	0.777778
SK_N_DZ_cytosolic_fraction	chr11	108142497	108142518	108142517	+	RAMPAGE_only	5	5	16	0.440159	3.272906	chr11	108142554	108142845	SINE|Alu|AluJo	+	chr11	108146120	108147588	ACAT1|ENST00000533597.1	+	108146120,108147269	108146359,108147588	0.937500
SK_N_DZ_cytosolic_fraction	chr11	34089397	34089440	34089439	+	High_confidence	6	9	39	1.072888	4.643875	chr11	34089484	34089623	SINE|Alu|AluJr	+	chr11	34090025	34101151	CAPRIN1|ENST00000533657.5	+	34090025,34090528,34091905,34096478,34097195,34097697,34099302	34090289,34090678,34092056,34096673,34097296,34097761,34101151	1.000000
SK_N_DZ_cytosolic_fraction	chr17	47067498	47067534	47067498	-	High_confidence	275	302	1372	37.743661	6.428892	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.889213
SK_N_DZ_cytosolic_fraction	chr9	62376620	62376642	62376632	+	High_confidence	3	3	10	0.275100	2.947703	chr9	62376600	62376639	SINE|MIR|MIRb	+	chr9	62376516	62434385	FGF7P6|ENST00000452826.2	+	62376516,62432875	62376813,62434385	0.800000
SK_N_DZ_cytosolic_fraction	chr3	183116002	183116042	183116041	-	High_confidence	5	5	24	0.660239	4.418296	chr3	183115868	183116225	LTR|ERV1|MER51E	-	chr3	183072426	183116053	MSTRG.25768.15	-	183072426,183086692,183092408,183094558,183115473	183072487,183086788,183092545,183094605,183116053	1.000000
SK_N_DZ_cytosolic_fraction	chr22	39320317	39320335	39320334	-	High_confidence	9	9	21	0.577709	4.011365	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	1.000000
SK_N_DZ_cytosolic_fraction	chr13	30429288	30429289	30429288	-	RAMPAGE_only	11	13	13	0.357629	3.334679	chr13	30428989	30429302	SINE|Alu|AluSq2	+	chr13	30202629	30307487	KATNAL1|NM_032116.4	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30307330	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307487	0.923077
SK_N_DZ_cytosolic_fraction	chr7	15547689	15547709	15547689	-	RAMPAGE_only	16	17	28	0.770279	4.282484	chr7	15547309	15553333	LINE|L1|L1PA2	+	chr7	15200317	15562015	AGMO|NM_001004320.1	-	15200317,15365513,15366139,15385445,15387405,15390670,15390839,15394112,15418557,15431004,15544771,15560140,15561719	15201359,15365619,15366222,15385562,15387540,15390750,15390905,15394179,15418653,15431108,15544923,15560271,15562015	0.785714
SK_N_DZ_cytosolic_fraction	chr15	80059918	80059933	80059932	+	High_confidence	71	79	239	6.574880	5.470257	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.979079
SK_N_DZ_cytosolic_fraction	chr11	74493051	74493074	74493051	-	High_confidence	10	12	45	1.237948	4.500093	chr11	74492972	74493054	SINE|MIR|MIR3	+	chr11	74491711	74493315	LIPT2|ENST00000527115.1	-	74491711,74493199	74492364,74493315	0.555556
SK_N_DZ_cytosolic_fraction	chr1	147517874	147517875	147517874	-	High_confidence	34	37	39	1.072888	4.682162	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147258884	147517875	LINC00624|ENST00000619867.4	-	147258884,147384667,147408589,147514337,147515520,147517442	147260976,147384863,147408689,147514448,147515676,147517875	0.897436
SK_N_DZ_cytosolic_fraction	chr9	62376790	62376801	62376800	-	High_confidence	18	18	38	1.045378	4.628108	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.842105
SK_N_DZ_cytosolic_fraction	chr16	67183472	67183492	67183472	-	High_confidence	3	3	13	0.357629	3.546594	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183941	MSTRG.13575.2	-	67175603,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178504,67179562,67179958,67180666,67181697,67183941	1.000000
SK_N_DZ_cytosolic_fraction	chr19	17823626	17823627	17823626	-	RAMPAGE_only	15	15	15	0.412649	3.640224	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
SK_N_DZ_cytosolic_fraction	chr10	63594791	63594842	63594834	+	RAMPAGE_only	2	3	11	0.302610	3.277613	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	1.000000
SK_N_DZ_cytosolic_fraction	chr10	65570509	65570536	65570521	+	High_confidence	62	118	366	10.068644	6.714936	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.644809
SK_N_DZ_cytosolic_fraction	chr3	149031301	149031394	149031343	-	RAMPAGE_only	5	5	37	1.017868	4.686147	chr3	149031275	149031328	SINE|MIR|MIR3	-	chr3	149030684	149086504	HLTF|ENST00000392912.6	-	149030684,149032200,149034917,149039048,149039580,149040030,149041489,149042165,149046079,149048027,149048862,149050231,149055302,149059717,149060642,149060778,149063430,149064790,149068239,149071251,149071582,149073224,149074214,149075880,149084681,149086316	149031363,149032372,149034998,149039229,149039693,149040156,149041668,149042290,149046259,149048163,149049001,149050375,149055400,149059807,149060687,149060858,149063524,149064866,149068335,149071443,149071657,149073322,149074348,149076047,149084889,149086504	0.810811
SK_N_DZ_cytosolic_fraction	chr12	56420573	56420601	56420573	-	RAMPAGE_only	2	2	8	0.220080	2.521641	chr12	56420319	56420542	LINE|L2|L2c	-	chr12	56417126	56424789	TIMELESS|ENST00000557589.1	-	56417126,56417906,56418133,56420568,56420812,56420962,56421898,56422105,56422846,56423273,56423624,56423796,56424761	56417786,56418008,56418359,56420687,56420881,56421809,56422016,56422191,56422992,56423475,56423707,56423894,56424789	0.875000
SK_N_DZ_cytosolic_fraction	chr8	15341611	15341613	15341612	+	RAMPAGE_only	6	9	11	0.302610	3.121928	chr8	15341424	15341805	LTR|ERVL-MaLR|MSTA	+	chr8	15417214	15673836	TUSC3|ENST00000503191.5	+	15417214,15483385,15623079,15659506,15662155,15673746	15417305,15483483,15623249,15659647,15662296,15673836	0.636364
SK_N_DZ_cytosolic_fraction	chr20	50130095	50130121	50130095	-	RAMPAGE_only	2	2	9	0.247590	2.750000	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.777778
SK_N_DZ_cytosolic_fraction	chr2	216107562	216107599	216107591	+	High_confidence	4	4	16	0.440159	3.640224	chr2	216107336	216107624	SINE|Alu|AluJo	+	chr2	216107463	216206303	XRCC5|ENST00000392133.7	+	216107463,216107652,216109090,216113015,216116658,216117745,216119042,216122061,216125916,216127535,216130874,216132324,216137087,216138088,216141185,216148082,216160067,216161978,216190224,216192638,216194918,216204321,216205187	216107532,216107698,216109457,216113129,216116842,216117794,216119165,216122253,216126031,216127674,216130987,216132387,216137225,216138179,216141319,216148276,216160161,216162048,216190334,216192735,216194986,216204396,216206303	0.937500
SK_N_DZ_cytosolic_fraction	chr19	49086539	49086547	49086539	+	RAMPAGE_only	2	2	7	0.192570	2.584963	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49085494	49108605	SNRNP70|ENST00000595231.5	+	49085494,49086404,49090290,49090465,49098426,49098641,49101389,49102113,49104633,49107624,49107821	49085636,49086561,49090353,49090520,49098491,49098704,49101471,49102185,49104735,49107712,49108605	0.857143
SK_N_DZ_cytosolic_fraction	chr13	52661476	52661507	52661476	+	RAMPAGE_only	2	3	10	0.275100	2.721928	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
SK_N_DZ_cytosolic_fraction	chr1	22163342	22163364	22163356	+	RAMPAGE_only	11	11	32	0.880319	3.906891	chr1	22163331	22163448	SINE|MIR|MIRb	-	chr1	22172190	22173232	MSTRG.528.1	+	22172190	22173232	0.656250
SK_N_DZ_cytosolic_fraction	chr13	29647331	29647361	29647360	+	High_confidence	24	24	60	1.650597	5.280782	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647420	29655404	MSTRG.9007.2	+	29647420,29655069	29647724,29655404	0.900000
SK_N_DZ_cytosolic_fraction	chr6	2990742	2990761	2990748	-	High_confidence	10	11	39	1.072888	4.451489	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989755	2990760	MSTRG.29398.3	-	2989755,2990670	2990011,2990760	0.512821
SK_N_DZ_cytosolic_fraction	chr19	10577490	10577512	10577501	-	High_confidence	18	18	35	0.962848	4.160705	chr19	10577423	10577734	SINE|Alu|AluY	-	chr19	10572670	10577314	AP1M2|ENST00000587069.5	-	10572670,10574416,10574903,10577197	10572895,10574492,10575029,10577314	0.885714
SK_N_DZ_cytosolic_fraction	chr16	19396016	19396028	19396016	+	RAMPAGE_only	2	2	7	0.192570	2.584963	chr16	19394166	19401565	LTR|ERVK|HERVK14C-int	-	chr16	19410538	19498140	TMC5|ENST00000541464.5	+	19410538,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19410773,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19498140	0.714286
SK_N_DZ_cytosolic_fraction	chr22	29550727	29550779	29550727	-	RAMPAGE_only	6	6	22	0.605219	3.327340	chr22	29550603	29550751	SINE|MIR|MIRb	+	chr22	29508330	29549157	THOC5|ENST00000358079.8	-	29508330,29511105,29512020,29517028,29517262,29519005,29520007,29520997,29525837,29528077,29528425,29528936,29531830,29536623,29539329,29542858,29543414,29544459,29549051	29508520,29511296,29512136,29517116,29517366,29519120,29520104,29521099,29525946,29528177,29528466,29529239,29531963,29536738,29539476,29542956,29543542,29544603,29549157	0.681818
SK_N_DZ_cytosolic_fraction	chr19	44914281	44914322	44914321	+	High_confidence	25	25	68	1.870677	4.895148	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.882353
SK_N_DZ_cytosolic_fraction	chr1	228103441	228103489	228103488	+	High_confidence	34	34	193	5.309422	6.110772	chr1	228103518	228103807	SINE|Alu|AluSz	+	chr1	228103486	228104831	MSTRG.3204.1	+	228103486	228104831	0.994819
SK_N_DZ_cytosolic_fraction	chr6	52955040	52955041	52955040	+	RAMPAGE_only	8	8	8	0.220080	2.500000	chr6	52955078	52955376	SINE|Alu|AluSz6	+	chr6	52995619	52995950	RF00100|ENST00000365328.1	+	52995619	52995950	1.000000
SK_N_DZ_cytosolic_fraction	chr20	37297344	37297345	37297344	+	High_confidence	7	7	7	0.192570	2.521641	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
SK_N_DZ_cytosolic_fraction	chr18	1408387	1408415	1408387	-	RAMPAGE_only	3	3	12	0.330119	3.277613	chr18	1408283	1408408	LTR|ERVL-MaLR|MLT1H	-	chr18	1268310	1407180	LINC00470|ENST00000412816.7	-	1268310,1272441,1275965,1368484,1406986	1269852,1272511,1276077,1368597,1407180	0.500000
SK_N_DZ_cytosolic_fraction	chr20	56367491	56367732	56367620	+	RAMPAGE_only	12	14	103	2.833526	5.115737	chr20	56367356	56367648	SINE|Alu|AluSz6	+	chr20	56358926	56368663	FAM210B|NM_080821.2	+	56358926,56365086,56366070	56359191,56365262,56368663	0.961165
SK_N_DZ_cytosolic_fraction	chr17	4143196	4143244	4143199	+	High_confidence	387	401	978	26.904738	6.315928	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.990798
SK_N_DZ_cytosolic_fraction	chr8	18063186	18063207	18063186	-	High_confidence	2	2	11	0.302610	2.732159	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
SK_N_DZ_cytosolic_fraction	chr12	53464780	53464834	53464833	+	RAMPAGE_only	5	5	24	0.660239	4.418296	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.875000
SK_N_DZ_cytosolic_fraction	chr16	19717864	19717865	19717864	-	High_confidence	4	4	7	0.192570	2.584963	chr16	19717752	19717834	SINE|MIR|MIRb	-	chr16	19706351	19718170	KNOP1|NM_001012991.2	-	19706351,19710508,19711371,19714117,19718157	19707221,19710586,19711440,19715037,19718170	0.714286
SK_N_DZ_cytosolic_fraction	chr6	28335904	28335941	28335915	-	High_confidence	8	13	44	1.210438	5.176151	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.750000
SK_N_DZ_cytosolic_fraction	chr19	3062922	3062983	3062922	-	High_confidence	6	6	53	1.458028	5.147820	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.962264
SK_N_DZ_cytosolic_fraction	chr1	237471099	237471100	237471099	+	RAMPAGE_only	11	12	17	0.467669	3.852169	chr1	237470691	237471420	LTR|ERV1|LTR9A1	-	chr1	237270496	237832644	RYR2|ENST00000360064.7	+	237270496,237330877,237355964,237369518,237374716,237377322,237387280,237388086,237417048,237423091,237441318,237445400,237454390,237456599,237469091,237491805,237492953,237496510,237500710,237503288,237506709,237511687,237530426,237548430,237550543,237566566,237569144,237589792,237590639,237591738,237593475,237595497,237602024,237610761,237614038,237617285,237623764,237625660,237627806,237631426,237633577,237634888,237638356,237639014,237640896,237643326,237648443,237649876,237651410,237654273,237655820,237657943,237659984,237660809,237666511,237667882,237674095,237674730,237678047,237680455,237687454,237698964,237700228,237701977,237705212,237706948,237708857,237709479,237711744,237717197,237718461,237723127,237726272,237727086,237730259,237732045,237733704,237742295,237756287,237757696,237759775,237760954,237770806,237772011,237773519,237778665,237781564,237783674,237784987,237787953,237791428,237792104,237793866,237795288,237798036,237801855,237806136,237808900,237819035,237828380,237830529,237831513,237832551	237270616,237330982,237355985,237369608,237374795,237377435,237387380,237388183,237417123,237423248,237441483,237445522,237454574,237456735,237469187,237491924,237493087,237496752,237500903,237503505,237506814,237511791,237530510,237548590,237550691,237566775,237569319,237590001,237590992,237591853,237593636,237595657,237602111,237610988,237614843,237617486,237623870,237625804,237628080,237631541,237633710,237634992,237638492,237639201,237641002,237643447,237648613,237650097,237651501,237654414,237655984,237658022,237660074,237660947,237666589,237667958,237674219,237674846,237678112,237680577,237687504,237699025,237700467,237702059,237705343,237707269,237709098,237709567,237711837,237717368,237718521,237723262,237726308,237727199,237730356,237732149,237733756,237742349,237756387,237757776,237759852,237761028,237770887,237772100,237773648,237778770,237781646,237784984,237785006,237788135,237791515,237792323,237793997,237795331,237798170,237801916,237806283,237809035,237819192,237828445,237830630,237831565,237832644	0.647059
SK_N_DZ_cytosolic_fraction	chr22	26484015	26484049	26484048	+	High_confidence	3	3	9	0.247590	2.725481	chr22	26484072	26484276	SINE|MIR|MIRb	+	chr22	26483883	26491938	SRRD|NM_001013694.2	+	26483883,26486022,26488028,26488389,26490043,26491024,26491462	26484099,26486063,26488288,26488488,26490198,26491070,26491938	0.888889
SK_N_DZ_cytosolic_fraction	chr5	151158489	151158506	151158505	-	High_confidence	3	3	8	0.220080	2.807355	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.750000
SK_N_DZ_cytosolic_fraction	chr17	28719697	28719712	28719711	+	High_confidence	20	20	32	0.880319	4.226410	chr17	28719632	28719760	SINE|Alu|AluYh3	+	chr17	28719981	28724356	RPL23A|NM_000984.5	+	28719981,28720706,28722722,28723570,28723866	28720030,28720890,28722899,28723640,28724356	1.000000
SK_N_DZ_cytosolic_fraction	chr5	20463533	20463534	20463533	-	RAMPAGE_only	16	16	21	0.577709	4.297079	chr5	20463364	20463722	LTR|ERVL-MaLR|THE1D	-	chr5	19473030	20575873	CDH18|NM_001291956.1	-	19473030,19483300,19502991,19520656,19543868,19571578,19591056,19612433,19721346,19746941,19838758,19981059,19991872,20255443,20575461	19473716,19483552,19503109,19520778,19544005,19571832,19591244,19612601,19721466,19747236,19839242,19981178,19992014,20255505,20575873	0.619048
SK_N_DZ_cytosolic_fraction	chr6	160005081	160005082	160005081	+	RAMPAGE_only	6	6	7	0.192570	2.584963	chr6	160004777	160005217	LTR|ERV1|LTR45B	-	chr6	159969105	160106551	IGF2R|ENST00000647592.1	+	159969105,159991183,160009009,160010686,160024571,160027184,160029549,160032550,160032941,160034418,160040559,160043147,160044513,160045744,160046497,160047158,160047791,160048374,160050472,160056423,160058022,160058905,160060546,160061502,160061752,160062531,160063414,160064400,160064803,160068248,160069867,160071909,160072764,160073212,160073756,160075846,160078200,160079579,160080128,160083949,160084994,160088032,160089106,160089915,160096438,160102518,160103745,160104673	159969395,159991323,160009134,160010785,160024704,160027314,160029655,160032713,160033107,160034522,160040724,160043288,160044657,160045882,160046645,160047336,160047907,160048543,160050652,160056525,160058124,160059098,160060717,160061646,160061928,160062619,160063630,160064531,160064901,160068385,160070058,160072036,160072884,160073469,160073975,160075996,160078362,160079787,160080275,160084184,160085131,160088147,160089253,160090103,160096625,160102671,160103815,160106551	0.571429
SK_N_DZ_cytosolic_fraction	chr9	88077824	88077829	88077824	-	High_confidence	3	3	8	0.220080	2.521641	chr9	88077653	88078060	LTR|ERVL-MaLR|MLT1A	-	chr9	88066434	88077900	LOC102724156|NR_135137.1	-	88066434,88077382,88077722	88066781,88077483,88077900	0.875000
SK_N_DZ_cytosolic_fraction	chr18	80147918	80147930	80147929	+	High_confidence	6	6	17	0.467669	3.852169	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.647059
SK_N_DZ_cytosolic_fraction	chr17	50737406	50737410	50737409	+	RAMPAGE_only	5	5	9	0.247590	2.750000	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50744660	50750847	LUC7L3|ENST00000504065.5	+	50744660,50745719,50746541,50749218,50750500	50744813,50746003,50746702,50749344,50750847	0.666667
SK_N_DZ_cytosolic_fraction	chr6	145828358	145828362	145828358	+	RAMPAGE_only	3	3	7	0.192570	2.584963	chr6	145828161	145828539	LTR|ERVL-MaLR|THE1C	+	chr6	145815297	145871493	AL356599.1|ENST00000592775.5	+	145815297,145870929	145815431,145871493	0.714286
SK_N_DZ_cytosolic_fraction	chr11	47783102	47783156	47783102	-	RAMPAGE_only	2	3	25	0.687749	3.970176	chr11	47782958	47783061	DNA|TcMar-Tigger|MER47A	-	chr11	47778236	47848313	NUP160|ENST00000530326.5	-	47778236,47784921,47786452,47788181,47788500,47791929,47792785,47797778,47797977,47798167,47798367,47801810,47803437,47804548,47806152,47807069,47808395,47812063,47812301,47812881,47813315,47815478,47815945,47818055,47819373,47821723,47822086,47835650,47836886,47837544,47839842,47840377,47847847,47848218	47779164,47785063,47786554,47788305,47788611,47791990,47792946,47797884,47798074,47798262,47798463,47801930,47803536,47804618,47806312,47807140,47808529,47812224,47812429,47813047,47813415,47815649,47816029,47818124,47819458,47821821,47822164,47835809,47837001,47837623,47840065,47840588,47847959,47848313	0.960000
SK_N_DZ_cytosolic_fraction	chr12	54235538	54235588	54235567	-	RAMPAGE_only	3	3	13	0.357629	3.700440	chr12	54235340	54235626	SINE|Alu|AluY	+	chr12	54230945	54259545	CBX5|NM_001127322.1	-	54230945,54246114,54252040,54257513,54259269	54241905,54246215,54252227,54257692,54259545	1.000000
SK_N_DZ_cytosolic_fraction	chr2	43143134	43143155	43143134	-	RAMPAGE_only	5	5	12	0.330119	3.584963	chr2	43142863	43143298	LTR|ERVL-MaLR|MLT1N2	-	chr2	43097745	43102691	LINC02580|ENST00000434020.1	-	43097745,43102034	43098040,43102691	0.666667
SK_N_DZ_cytosolic_fraction	chr13	30257824	30257866	30257836	-	RAMPAGE_only	9	9	57	1.568068	5.338343	chr13	30257280	30258056	LINE|RTE-BovB|MamRTE1	-	chr13	30202629	30307021	MSTRG.9010.2	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30306678	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307021	0.614035
SK_N_DZ_cytosolic_fraction	chr3	134485387	134485450	134485443	-	High_confidence	60	63	351	9.655995	6.525602	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.971510
SK_N_DZ_cytosolic_fraction	chr8	83911189	83911190	83911189	+	High_confidence	7	8	8	0.220080	2.521641	chr8	83911201	83911697	LTR|ERV1|LOR1-int	+	chr8	83911073	83980159	MSTRG.33863.1	+	83911073,83967327,83978571,83979924	83911505,83976926,83978766,83980159	0.500000
SK_N_DZ_cytosolic_fraction	chr17	17670946	17670947	17670946	+	RAMPAGE_only	46	50	61	1.678107	5.516378	chr17	17670988	17671157	LTR|ERVL-MaLR|MLT1D	+	chr17	17681089	17811453	MSTRG.14555.1	+	17681089,17724027,17792932,17803755,17809389,17809969	17681125,17724159,17798513,17803849,17809439,17811453	0.639344
SK_N_DZ_cytosolic_fraction	chr1	237471146	237471158	237471146	+	RAMPAGE_only	8	8	15	0.412649	3.906891	chr1	237470691	237471420	LTR|ERV1|LTR9A1	-	chr1	237270496	237832644	RYR2|ENST00000360064.7	+	237270496,237330877,237355964,237369518,237374716,237377322,237387280,237388086,237417048,237423091,237441318,237445400,237454390,237456599,237469091,237491805,237492953,237496510,237500710,237503288,237506709,237511687,237530426,237548430,237550543,237566566,237569144,237589792,237590639,237591738,237593475,237595497,237602024,237610761,237614038,237617285,237623764,237625660,237627806,237631426,237633577,237634888,237638356,237639014,237640896,237643326,237648443,237649876,237651410,237654273,237655820,237657943,237659984,237660809,237666511,237667882,237674095,237674730,237678047,237680455,237687454,237698964,237700228,237701977,237705212,237706948,237708857,237709479,237711744,237717197,237718461,237723127,237726272,237727086,237730259,237732045,237733704,237742295,237756287,237757696,237759775,237760954,237770806,237772011,237773519,237778665,237781564,237783674,237784987,237787953,237791428,237792104,237793866,237795288,237798036,237801855,237806136,237808900,237819035,237828380,237830529,237831513,237832551	237270616,237330982,237355985,237369608,237374795,237377435,237387380,237388183,237417123,237423248,237441483,237445522,237454574,237456735,237469187,237491924,237493087,237496752,237500903,237503505,237506814,237511791,237530510,237548590,237550691,237566775,237569319,237590001,237590992,237591853,237593636,237595657,237602111,237610988,237614843,237617486,237623870,237625804,237628080,237631541,237633710,237634992,237638492,237639201,237641002,237643447,237648613,237650097,237651501,237654414,237655984,237658022,237660074,237660947,237666589,237667958,237674219,237674846,237678112,237680577,237687504,237699025,237700467,237702059,237705343,237707269,237709098,237709567,237711837,237717368,237718521,237723262,237726308,237727199,237730356,237732149,237733756,237742349,237756387,237757776,237759852,237761028,237770887,237772100,237773648,237778770,237781646,237784984,237785006,237788135,237791515,237792323,237793997,237795331,237798170,237801916,237806283,237809035,237819192,237828445,237830630,237831565,237832644	0.733333
SK_N_DZ_cytosolic_fraction	chrX	74000421	74000441	74000421	+	RAMPAGE_only	4	4	10	0.275100	2.721928	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	1.000000
SK_N_DZ_cytosolic_fraction	chr1	69551866	69551878	69551877	+	High_confidence	531	534	772	21.237687	7.424036	chr1	69551506	69552150	LTR|ERV1|LTR9	-	chr1	69551848	69565194	MSTRG.1397.1	+	69551848,69555417,69556935,69557779,69563606	69551943,69555465,69556993,69559819,69565194	0.670984
SK_N_DZ_cytosolic_fraction	chr8	99892056	99892057	99892056	-	RAMPAGE_only	486	487	634	17.441313	4.850694	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.992114
SK_N_DZ_cytosolic_fraction	chr4	5525270	5525299	5525287	+	High_confidence	19	20	56	1.540558	5.006284	chr4	5525282	5525571	LTR|ERV1|MER31-int	-	chr4	5525389	5527800	LINC01587|ENST00000505296.1	+	5525389,5526194,5527387	5525496,5526333,5527800	0.785714
SK_N_DZ_cytosolic_fraction	chr2	6866504	6866522	6866506	-	High_confidence	4	6	16	0.440159	3.773557	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.750000
SK_N_DZ_cytosolic_fraction	chr1	153967486	153967512	153967486	+	High_confidence	50	55	175	4.814242	6.255200	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.605714
SK_N_DZ_cytosolic_fraction	chr2	216107494	216107502	216107501	+	High_confidence	8	8	17	0.467669	3.875000	chr2	216107336	216107624	SINE|Alu|AluJo	+	chr2	216107463	216206303	XRCC5|ENST00000392133.7	+	216107463,216107652,216109090,216113015,216116658,216117745,216119042,216122061,216125916,216127535,216130874,216132324,216137087,216138088,216141185,216148082,216160067,216161978,216190224,216192638,216194918,216204321,216205187	216107532,216107698,216109457,216113129,216116842,216117794,216119165,216122253,216126031,216127674,216130987,216132387,216137225,216138179,216141319,216148276,216160161,216162048,216190334,216192735,216194986,216204396,216206303	0.941176
SK_N_DZ_cytosolic_fraction	chr5	32403105	32403158	32403105	-	RAMPAGE_only	12	13	40	1.100398	4.346226	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.950000
SK_N_DZ_cytosolic_fraction	chr10	114322098	114322099	114322098	+	High_confidence	235	235	301	8.280497	5.574005	chr10	114321903	114322262	LTR|ERVL-MaLR|THE1B	+	chr10	114322110	114326875	MSTRG.4829.1	+	114322110,114322946,114326605	114322179,114323100,114326875	0.617940
SK_N_DZ_cytosolic_fraction	chr2	189782421	189782457	189782421	-	High_confidence	2	2	9	0.247590	2.947703	chr2	189782212	189782378	LINE|L1|L1MB3	-	chr2	189770323	189783382	ORMDL1|ENST00000325795.7	-	189770323,189775564,189782421	189771902,189775716,189783382	1.000000
SK_N_DZ_cytosolic_fraction	chr3	191425524	191425528	191425527	+	High_confidence	187	294	429	11.801772	7.225539	chr3	191425335	191425687	LTR|ERVL-MaLR|THE1B	+	chr3	191425527	191591097	AC073365.1|ENST00000641055.1	+	191425527,191473550,191557261,191559677,191569599,191573313,191589902	191425604,191473688,191557384,191559750,191569824,191573474,191591097	0.738928
SK_N_DZ_cytosolic_fraction	chr3	80770347	80770413	80770347	-	High_confidence	128	132	534	14.690317	6.780247	chr3	80769735	80770387	LTR|ERV1|LTR1A1	-	chr3	80604396	80770237	MSTRG.24860.1	-	80604396,80631230,80633814,80761457,80769758	80604473,80631287,80633971,80761573,80770237	0.906367
SK_N_DZ_cytosolic_fraction	chr6	57961626	57961648	57961647	+	High_confidence	11	11	34	0.935339	4.969816	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961437	57973690	AL445250.1|ENST00000641671.1	+	57961437,57962180,57965516,57971594,57972093	57961742,57962248,57965743,57971656,57973690	0.911765
SK_N_DZ_cytosolic_fraction	chr8	143281653	143281687	143281669	-	High_confidence	57	58	334	9.188326	6.023647	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280160	143281610	MSTRG.34343.1	-	143280160,143280881,143281481	143280515,143281384,143281610	0.688623
SK_N_DZ_cytosolic_fraction	chr2	26750059	26750086	26750085	+	High_confidence	6	6	16	0.440159	3.773557	chr2	26749864	26750871	LTR|ERVK|LTR5_Hs	+	chr2	26749999	26781849	MSTRG.19273.1	+	26749999,26774250,26775043,26775463,26776371,26778041	26750190,26774323,26775215,26775676,26776482,26781849	0.500000
SK_N_DZ_cytosolic_fraction	chr17	59619888	59619929	59619894	+	High_confidence	916	1046	4046	111.305286	6.311771	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.934009
SK_N_DZ_cytosolic_fraction	chr7	36420729	36420741	36420729	+	High_confidence	3	3	10	0.275100	3.169925	chr7	36420775	36420884	LINE|L2|L2b	+	chr7	36420223	36426034	ANLN|ENST00000446635.5	+	36420223,36420611,36421856,36422632,36423816,36424544,36424685,36425701,36426014	36420314,36420744,36421992,36422809,36423943,36424593,36424742,36425740,36426034	0.700000
SK_N_DZ_cytosolic_fraction	chr17	59892716	59892729	59892716	-	High_confidence	10	10	26	0.715259	4.303509	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.769231
SK_N_DZ_cytosolic_fraction	chr4	99906521	99906557	99906550	-	High_confidence	3	3	13	0.357629	3.418296	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.923077
SK_N_DZ_cytosolic_fraction	chr9	85802736	85802774	85802761	-	RAMPAGE_only	3	4	12	0.330119	3.188722	chr9	85802616	85803032	LTR|ERVL-MaLR|MLT1J2	-	chr9	85785998	85793480	AL353743.2|ENST00000439544.5	-	85785998,85786437,85791486,85792180,85793420	85786175,85786551,85791536,85792252,85793480	0.583333
SK_N_DZ_cytosolic_fraction	chr2	156254904	156254936	156254904	-	High_confidence	3	3	9	0.247590	3.169925	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156021760	156254915	LINC01876|ENST00000637665.1	-	156021760,156022671,156024465,156254777	156021899,156022817,156024607,156254915	0.666667
SK_N_DZ_cytosolic_fraction	chr10	123162638	123162794	123162638	+	RAMPAGE_only	7	8	71	1.953207	5.107006	chr10	123162608	123162659	DNA|hAT-Ac|OldhAT1	-	chr10	123154414	123165365	BUB3|ENST00000368858.9	+	123154414,123154917,123155657,123157728,123160406,123162235,123162611,123165046	123154485,123155112,123155727,123157880,123160565,123162413,123162828,123165365	0.676056
SK_N_DZ_cytosolic_fraction	chr2	73736756	73736757	73736756	-	High_confidence	32	32	32	0.880319	4.491729	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73729889	73737335	MSTRG.19861.5	-	73729889,73730559,73732162,73732583,73734428,73737301	73730029,73730736,73732285,73732704,73734591,73737335	1.000000
SK_N_DZ_cytosolic_fraction	chr3	98503773	98503774	98503773	-	RAMPAGE_only	29	29	36	0.990358	3.700254	chr3	98503606	98503968	LTR|ERVL-MaLR|THE1B	-	chr3	98500839	98522922	CLDND1|ENST00000507874.5	-	98500839,98517051,98518884,98521132,98521652,98522848	98501520,98517189,98518995,98521442,98521718,98522922	0.916667
SK_N_DZ_cytosolic_fraction	chr8	66926443	66926477	66926450	-	High_confidence	42	52	150	4.126494	5.544583	chr8	66926412	66926708	SINE|Alu|AluY	-	chr8	66922017	66926398	SNHG6|ENST00000520619.1	-	66922017,66922323,66922613,66926197	66922114,66922392,66922725,66926398	0.900000
SK_N_DZ_cytosolic_fraction	chr8	2727247	2727272	2727247	+	High_confidence	3	3	10	0.275100	3.169925	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.500000
SK_N_DZ_cytosolic_fraction	chr16	8842392	8842394	8842393	+	High_confidence	4	7	10	0.275100	3.169925	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.800000
SK_N_DZ_cytosolic_fraction	chr5	139364646	139364741	139364719	+	RAMPAGE_only	4	4	22	0.605219	4.277613	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342441	139369720	PAIP2|ENST00000394795.6	+	139342441,139363758,139364563,139368732	139343406,139363922,139364743,139369720	1.000000
SK_N_DZ_cytosolic_fraction	chr11	4129081	4129136	4129116	+	RAMPAGE_only	12	12	69	1.898187	5.414694	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	1.000000
SK_N_DZ_cytosolic_fraction	chr7	116724043	116724122	116724121	+	High_confidence	55	61	252	6.932509	6.515477	chr7	116718497	116724489	LINE|L1|L1PA2	-	chr7	116724145	116755414	MET|ENST00000495962.1	+	116724145,116724771,116731667,116739949,116740851,116755354	116724249,116724847,116731859,116740084,116741025,116755414	0.753968
SK_N_DZ_cytosolic_fraction	chr3	98733155	98733222	98733184	+	High_confidence	11	11	88	2.420876	5.948132	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.875000
SK_N_DZ_cytosolic_fraction	chr6	37423962	37423985	37423984	+	High_confidence	117	118	260	7.152589	6.701114	chr6	37423607	37424237	LTR|ERV1|LTR9	-	chr6	37423960	37462072	MSTRG.30012.1	+	37423960,37432347,37435623,37443998,37446290,37450250,37451805,37453046,37453239,37458611,37459565,37461548,37461969	37424049,37432459,37435762,37444150,37446449,37450343,37451877,37453141,37453312,37458810,37459684,37461645,37462072	0.919231
SK_N_DZ_cytosolic_fraction	chr7	99935241	99935242	99935241	-	High_confidence	8	8	10	0.275100	3.169925	chr7	99935071	99935422	LTR|ERVL-MaLR|THE1B	-	chr7	99923268	99935213	MSTRG.32268.1	-	99923268,99928839,99935154	99923603,99929621,99935213	0.800000
SK_N_DZ_cytosolic_fraction	chr19	9323748	9323772	9323748	+	High_confidence	8	10	23	0.632729	4.349649	chr19	9323408	9324010	LTR|ERV1|MER51A	+	chr19	9323771	9343845	ZNF559|NM_001202411.1	+	9323771,9324694,9333014,9338493,9339192,9341101,9341616	9324228,9324780,9333113,9338582,9339319,9341184,9343845	0.913043
SK_N_DZ_cytosolic_fraction	chr12	102313284	102313303	102313302	+	RAMPAGE_only	10	12	31	0.852809	4.789015	chr12	102307781	102313768	LINE|L1|L1PA2	-	chr12	102304354	102463491	LINC02456|ENST00000635615.1	+	102304354,102304631,102315310,102348882,102423070,102462727	102304448,102304756,102315490,102348932,102423180,102463491	0.548387
SK_N_DZ_cytosolic_fraction	chr13	33818332	33818375	33818364	+	High_confidence	10	10	44	1.210438	5.124093	chr13	33818361	33818761	LINE|L2|L2a	-	chr13	33818068	33837507	RFC3|NM_002915.3	+	33818068,33821131,33823916,33825788,33829835,33830718,33831255,33835147,33836103	33818265,33821269,33823984,33825886,33830017,33830855,33831354,33835217,33837507	0.909091
SK_N_DZ_cytosolic_fraction	chr5	168549842	168549874	168549842	-	RAMPAGE_only	9	9	27	0.742769	4.606739	chr5	168549776	168549944	SINE|Alu|AluSc8	-	chr5	168548494	168579600	PANK3|ENST00000239231.6	-	168548494,168559031,168561392,168563888,168566012,168568645,168579255	168557621,168559157,168561516,168564065,168566266,168568998,168579600	1.000000
SK_N_DZ_cytosolic_fraction	chr15	97295874	97295875	97295874	+	High_confidence	6	6	8	0.220080	3.000000	chr15	97289925	97296313	LINE|L1|L1PA3	-	chr15	97295880	97415824	LINC02253|ENST00000560314.1	+	97295880,97411191,97415789	97296323,97411278,97415824	0.500000
SK_N_DZ_cytosolic_fraction	chr15	45631147	45631148	45631147	+	High_confidence	14	14	14	0.385139	2.753434	chr15	45630952	45631306	LTR|ERVL-MaLR|THE1A	+	chr15	45631147	45691280	SQOR|ENST00000568606.5	+	45631147,45631926,45658906,45661954,45669927,45673606,45676100,45682477,45688336,45689038,45690972	45631230,45632015,45659157,45662125,45669981,45673801,45676310,45682661,45688404,45689217,45691280	1.000000
SK_N_DZ_cytosolic_fraction	chr12	100398817	100398853	100398820	+	RAMPAGE_only	24	25	145	3.988944	5.225135	chr12	100398705	100399070	LTR|ERVL-MaLR|THE1B	+	chr12	100357078	100422059	SLC17A8|ENST00000323346.9	+	100357078,100380700,100391000,100393368,100396329,100401776,100402339,100402595,100404037,100412769,100418028,100419814	100357492,100380953,100391119,100393483,100396417,100401863,100402479,100402745,100404170,100412880,100418156,100422059	0.834483
SK_N_DZ_cytosolic_fraction	chr9	70129258	70129262	70129261	+	High_confidence	6	6	10	0.275100	3.321928	chr9	70129114	70129476	LTR|ERVL-MaLR|THE1B	+	chr9	70129339	70216940	MSTRG.35017.2	+	70129339,70131518,70140144,70143553,70168701,70170478,70216918	70129393,70131612,70140288,70143819,70168795,70170631,70216940	0.800000
SK_N_DZ_cytosolic_fraction	chr15	78747845	78747850	78747849	-	High_confidence	55	58	117	3.218665	6.223794	chr15	78747678	78748038	LTR|ERVL-MaLR|THE1C	-	chr15	78692577	78747833	MSTRG.11985.10	-	78692577,78707987,78727611,78729063,78747797	78692894,78708105,78728399,78729246,78747833	0.905983
SK_N_DZ_cytosolic_fraction	chr12	123617863	123617864	123617863	+	High_confidence	4	6	7	0.192570	2.584963	chr12	123617854	123617910	LINE|RTE-X|L4_A_Mam	-	chr12	123618015	123620422	DDX55|ENST00000421670.3	+	123618015,123619431,123619963	123618837,123619724,123620422	0.857143
SK_N_DZ_cytosolic_fraction	chr19	48868613	48868666	48868613	-	High_confidence	129	142	656	18.046532	7.211178	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.980183
SK_N_DZ_cytosolic_fraction	chr11	44695212	44695261	44695212	-	RAMPAGE_only	19	19	70	1.925697	5.493416	chr11	44695126	44695254	LINE|L1|L1ME3F	-	chr11	44694862	44696301	AC104241.2|ENST00000532748.1	-	44694862,44696220	44695570,44696301	0.742857
SK_N_DZ_cytosolic_fraction	chr11	17282791	17282814	17282810	+	RAMPAGE_only	3	3	9	0.247590	2.947703	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.888889
SK_N_DZ_cytosolic_fraction	chr10	88361105	88361137	88361116	-	RAMPAGE_only	11	11	34	0.935339	4.771143	chr10	88360932	88361313	LTR|ERVL-MaLR|MLT1A	-	chr10	88284958	88583213	RNLS|ENST00000331772.8	-	88284958,88314465,88362551,88572902,88581566,88582201,88583072	88285506,88314641,88362725,88573061,88581709,88582307,88583213	0.529412
SK_N_DZ_cytosolic_fraction	chr2	181954479	181954485	181954479	+	High_confidence	4	4	9	0.247590	3.000000	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.666667
SK_N_DZ_cytosolic_fraction	chr15	97295903	97295933	97295932	+	RAMPAGE_only	4	4	14	0.385139	3.546594	chr15	97289925	97296313	LINE|L1|L1PA3	-	chr15	97411254	97432094	LINC02253|ENST00000559321.1	+	97411254,97429769,97431790	97411278,97429889,97432094	0.642857
SK_N_DZ_cytosolic_fraction	chr11	94237802	94237851	94237848	+	High_confidence	8	9	59	1.623087	5.530865	chr11	94232524	94238528	LINE|L1|L1PA2	-	chr11	94238149	94279206	AP002784.1|ENST00000515097.2	+	94238149,94278764	94238277,94279206	0.779661
SK_N_DZ_cytosolic_fraction	chr1	168354772	168354860	168354823	+	High_confidence	14	14	133	3.658824	6.637916	chr1	168348862	168354879	LINE|L1|L1PA2	-	chr1	168354354	168567900	MSTRG.2612.1	+	168354354,168354771,168379608,168559605	168354541,168354910,168379782,168567900	0.511278
SK_N_DZ_cytosolic_fraction	chr14	47795013	47795027	47795013	-	High_confidence	8	11	39	1.072888	4.626621	chr14	47794965	47800647	LINE|L1|L1PA2	+	chr14	47764952	47795014	LINC00648|NR_039996.1	-	47764952,47789905,47794971	47767757,47789943,47795014	0.794872
SK_N_DZ_cytosolic_fraction	chr11	66438597	66438633	66438597	-	High_confidence	4	4	24	0.660239	4.175736	chr11	66438453	66438566	SINE|MIR|MIR	-	chr11	66435837	66438826	MRPL11|ENST00000534488.5	-	66435837,66437103,66437349,66438163,66438631	66436112,66437263,66437435,66438259,66438826	0.833333
SK_N_DZ_cytosolic_fraction	chr7	42960890	42960918	42960917	-	RAMPAGE_only	9	9	47	1.292968	4.365711	chr7	42960777	42961015	LTR|ERV1|HERV35I-int	-	chr7	42954134	42963343	AC005537.1|ENST00000588324.1	-	42954134,42955376,42955954,42959928,42961338,42962967	42954485,42955457,42956132,42959990,42961528,42963343	0.914894
SK_N_DZ_cytosolic_fraction	chr1	39026139	39026214	39026139	+	High_confidence	4	7	39	1.072888	4.374895	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
SK_N_DZ_cytosolic_fraction	chr12	31117606	31117607	31117606	-	High_confidence	4	7	7	0.192570	2.521641	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	1.000000
SK_N_DZ_cytosolic_fraction	chr7	43926788	43926844	43926843	+	High_confidence	11	14	47	1.292968	4.533862	chr7	43926842	43926982	LINE|L2|L2c	-	chr7	43926517	43953567	UBE2D4|ENST00000440652.5	+	43926517,43938430,43942953,43948631,43950598,43952649	43926556,43938494,43943031,43948737,43950692,43953567	0.787234
SK_N_DZ_cytosolic_fraction	chr2	241808790	241808822	241808809	+	High_confidence	7	8	37	1.017868	5.014997	chr2	241808248	241808863	LTR|ERV1|PABL_A	-	chr2	241808824	241817413	NEU4|ENST00000407683.5	+	241808824,241814481,241814891,241816050	241809274,241814685,241815147,241817413	0.810811
SK_N_DZ_cytosolic_fraction	chr15	82546441	82546442	82546441	-	RAMPAGE_only	10	10	10	0.275100	2.846439	chr15	82546117	82546394	SINE|Alu|AluSx1	-	chr15	82536749	82540564	RPS17|ENST00000330244.11	-	82536749,82538305,82538879,82539980,82540425	82536881,82538371,82538985,82540132,82540564	1.000000
SK_N_DZ_cytosolic_fraction	chr1	241632159	241632269	241632268	-	RAMPAGE_only	7	10	56	1.540558	4.864252	chr1	241632007	241632363	LTR|ERVL-MaLR|THE1B	+	chr1	241628863	241635930	CHML|NM_001821.3	-	241628863	241635930	0.946429
SK_N_DZ_cytosolic_fraction	chr2	205188102	205188107	205188102	+	RAMPAGE_only	12	12	24	0.660239	4.251629	chr2	205187953	205188316	LINE|L2|L2c	-	chr2	204965151	205620162	PARD3B|ENST00000622699.2	+	204965151,205047580,205104425,205113490,205118920,205121590,205124326,205125608,205158721,205172210,205176444,205185763,205193204,205245777,205300529,205301463,205401012,205499895,205553323,205615455	204965323,205047690,205104514,205113577,205119046,205121949,205124466,205125737,205158907,205172381,205176577,205185863,205193320,205245822,205300736,205301701,205401123,205500031,205553403,205620162	1.000000
SK_N_DZ_cytosolic_fraction	chr4	102431244	102431260	102431244	-	High_confidence	14	14	54	1.485538	4.824060	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.962963
SK_N_DZ_cytosolic_fraction	chr7	44828298	44828632	44828579	-	RAMPAGE_only	9	10	197	5.419462	6.062700	chr7	44828400	44828601	SINE|MIR|MIRb	-	chr7	44826790	44848077	H2AFV|ENST00000222690.10	-	44826790,44835528,44840898,44843276,44847968	44830163,44835658,44841012,44843354,44848077	0.984772
SK_N_DZ_cytosolic_fraction	chr19	34860565	34860589	34860575	-	High_confidence	38	41	105	2.888545	5.077135	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849045	34860699	MSTRG.18010.1	-	34849045,34860173	34849549,34860699	0.895238
SK_N_DZ_cytosolic_fraction	chr14	77924721	77924756	77924721	+	RAMPAGE_only	9	11	24	0.660239	4.168296	chr14	77924737	77924859	SINE|MIR|MIRb	+	chr14	77923231	77935012	ADCK1|ENST00000555217.1	+	77923231,77925763,77931517,77933219	77924606,77925961,77931711,77935012	0.875000
SK_N_DZ_cytosolic_fraction	chr13	24968377	24968406	24968405	-	High_confidence	3	5	11	0.302610	3.121928	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24951387	24967454	TPTE2P1|ENST00000435256.1	-	24951387,24953280,24954772,24959733,24961748,24965499,24967391	24951490,24953344,24954869,24959812,24961854,24965580,24967454	0.727273
SK_N_DZ_cytosolic_fraction	chr2	6918666	6918680	6918679	-	High_confidence	28	28	72	1.980717	5.603885	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.875000
SK_N_DZ_cytosolic_fraction	chr5	149509878	149509893	149509889	-	RAMPAGE_only	3	3	12	0.330119	3.095795	chr5	149509722	149509839	SINE|Alu|AluJb	-	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.833333
SK_N_DZ_cytosolic_fraction	chr3	178860335	178860441	178860440	-	High_confidence	6	6	33	0.907829	4.631616	chr3	178859948	178865979	LINE|L1|L1PA2	+	chr3	178525466	178860405	KCNMB2-AS1|NR_126561.1	-	178525466,178748428,178749045,178801792,178859488,178860293	178526625,178748485,178749236,178801934,178859623,178860405	0.606061
SK_N_DZ_cytosolic_fraction	chr1	241848725	241848763	241848762	+	High_confidence	3	3	11	0.302610	3.459432	chr1	241848591	241848771	DNA|hAT-Charlie|MER102b	-	chr1	241848730	241889937	EXO1|ENST00000348581.9	+	241848730,241850408,241852291,241853357,241857344,241858505,241860516,241861405,241866829,241872031,241878748,241881915,241885313,241889464	241849027,241850586,241852411,241853481,241857482,241858718,241860704,241861502,241867055,241872278,241879343,241882017,241885507,241889937	0.909091
SK_N_DZ_cytosolic_fraction	chr19	571725	571755	571725	-	High_confidence	39	41	194	5.336932	5.854224	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567310	571734	AC009005.1|ENST00000590292.5	-	567310,571439,571696	567624,571596,571734	0.907216
SK_N_DZ_cytosolic_fraction	chr2	3100688	3100710	3100690	+	High_confidence	15	28	52	1.430518	4.786790	chr2	3100683	3100783	LINE|L2|L2c	-	chr2	3100877	3105934	MSTRG.19009.1	+	3100877,3105424	3101382,3105934	0.980769
SK_N_DZ_cytosolic_fraction	chr2	15562146	15562164	15562146	+	High_confidence	3	3	8	0.220080	3.000000	chr2	15562146	15562291	LTR|ERV1|MER83	-	chr2	15561376	15574960	MSTRG.19151.1	+	15561376,15564101,15565064,15573483	15562183,15564274,15565198,15574960	0.500000
SK_N_DZ_cytosolic_fraction	chr10	5035337	5035338	5035337	+	High_confidence	7	7	9	0.247590	3.169925	chr10	5035129	5035473	LTR|ERVK|LTR14A	+	chr10	5035356	5097533	AKR1C3|ENST00000470862.6	+	5035356,5077869,5080745,5081681,5096409,5097433	5035616,5077977,5080901,5081885,5096577,5097533	0.555556
SK_N_DZ_cytosolic_fraction	chr21	23477614	23477637	23477614	+	High_confidence	6	6	12	0.330119	2.913977	chr21	23477416	23477798	LTR|ERVL|MLT2A1	+	chr21	23477640	23490724	AP000459.1|ENST00000433101.1	+	23477640,23489994	23477771,23490724	0.666667
SK_N_DZ_cytosolic_fraction	chr19	58306079	58306088	58306086	+	High_confidence	17	18	28	0.770279	4.161978	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306086	58315203	MSTRG.18927.37	+	58306086,58312027	58306216,58315203	0.928571
SK_N_DZ_cytosolic_fraction	chrX	155175662	155175663	155175662	+	RAMPAGE_only	5	6	7	0.192570	2.807355	chrX	155175467	155175829	LTR|ERVL-MaLR|THE1B	+	chrX	155197006	155239841	VBP1|NM_001303544.1	+	155197006,155208873,155220182,155227234,155228383,155236228,155238771	155197139,155208981,155220307,155227301,155228482,155236367,155239841	1.000000
SK_N_DZ_cytosolic_fraction	chr6	3195772	3195779	3195772	-	High_confidence	817	829	1560	42.915533	6.959302	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.970513
SK_N_DZ_cytosolic_fraction	chr12	19945696	19945751	19945703	-	High_confidence	120	140	483	13.287309	5.576770	chr12	19945684	19945964	LINE|L2|L2	+	chr12	19939781	19945741	MSTRG.7271.1	-	19939781,19945349,19945618	19941610,19945525,19945741	0.950311
SK_N_DZ_cytosolic_fraction	chr5	160199150	160199156	160199155	+	High_confidence	1904	2342	3872	106.518553	5.536015	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.922262
SK_N_DZ_cytosolic_fraction	chr16	58421322	58421323	58421322	+	High_confidence	10	10	10	0.275100	2.846439	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421325	58436169	LINC02137|ENST00000562322.1	+	58421325,58435691	58421385,58436169	0.600000
SK_N_DZ_cytosolic_fraction	chr2	9114922	9114923	9114922	+	High_confidence	7	7	8	0.220080	2.807355	chr2	9114748	9115100	LTR|ERVL-MaLR|THE1B	+	chr2	9115196	9116884	AC093904.3|ENST00000492300.1	+	9115196,9116572	9115252,9116884	0.500000
SK_N_DZ_cytosolic_fraction	chr9	122858669	122858691	122858669	-	RAMPAGE_only	4	4	10	0.275100	2.947703	chr9	122858410	122858651	SINE|MIR|MIR	-	chr9	122844555	122898110	RC3H2|ENST00000373670.5	-	122844555,122851080,122851322,122853951,122854184,122854530,122855183,122855731,122857922,122858668,122859916,122865348,122877470,122879754,122879992,122880593,122883203,122890311,122892908,122897278	122849822,122851229,122851436,122854086,122854266,122854615,122855397,122855878,122858093,122859102,122860131,122865657,122877583,122879873,122880125,122880794,122883379,122890545,122893026,122898110	0.500000
SK_N_DZ_cytosolic_fraction	chr3	135439856	135439862	135439861	-	High_confidence	243	314	528	14.525257	7.240157	chr3	135439148	135439860	LINE|L1|L1P1	-	chr3	135355007	135439888	MSTRG.25368.2	-	135355007,135357271,135371722,135379261,135379780,135439755	135356416,135357382,135374321,135379427,135379847,135439888	0.859848
SK_N_DZ_cytosolic_fraction	chr12	15001786	15001830	15001786	+	High_confidence	5	5	51	1.403008	4.958563	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.588235
SK_N_DZ_cytosolic_fraction	chr9	129488782	129488857	129488856	+	High_confidence	6	6	39	1.072888	4.073475	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.974359
SK_N_DZ_cytosolic_fraction	chr15	48796010	48796025	48796010	-	RAMPAGE_only	2	3	8	0.220080	2.521641	chr15	48795639	48795973	LINE|L1|L1MC5	-	chr15	48783982	48789322	CEP152|ENST00000558337.1	-	48783982,48788800,48789237	48784120,48789001,48789322	0.625000
SK_N_DZ_cytosolic_fraction	chr7	39013382	39013417	39013391	+	High_confidence	3	3	19	0.522689	3.614369	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.736842
SK_N_DZ_cytosolic_fraction	chr3	9363405	9363420	9363405	+	High_confidence	4	4	17	0.467669	3.734522	chr3	9363443	9363535	LINE|L2|L2b	+	chr3	9363667	9380888	MSTRG.23935.7	+	9363667,9365015,9366907,9371059,9374515,9377818,9380502	9363767,9365320,9366985,9371536,9374646,9377888,9380888	0.705882
SK_N_DZ_cytosolic_fraction	chr1	6200570	6200658	6200657	-	High_confidence	19	22	164	4.511633	4.133285	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.963415
SK_N_DZ_cytosolic_fraction	chr7	35149521	35149522	35149521	+	RAMPAGE_only	14	14	14	0.385139	3.807355	chr7	35149526	35149670	LINE|L1|L1MB1	+	chr7	35800931	35907105	SEPT7|ENST00000399034.7	+	35800931,35832797,35863551,35872665,35873640,35879822,35882483,35883890,35885827,35890667,35898247,35903075,35904253	35801270,35832900,35863658,35872766,35873775,35879940,35882576,35883987,35885879,35890793,35898383,35903215,35907105	1.000000
SK_N_DZ_cytosolic_fraction	chr2	15591048	15591051	15591048	+	High_confidence	2	2	7	0.192570	2.521641	chr2	15590950	15591074	SINE|Alu|AluSc8	-	chr2	15591177	15631111	DDX1|ENST00000381341.6	+	15591177,15591653,15595144,15595489,15596733,15597374,15599668,15602547,15603191,15603813,15604436,15605949,15606149,15607174,15613223,15617243,15618180,15620207,15621064,15623435,15627053,15628444,15628637,15628796,15629601,15629989,15630775	15591286,15591949,15595196,15595553,15596763,15597471,15599716,15602631,15603275,15603890,15604509,15606026,15606264,15607313,15613284,15617342,15618270,15620396,15621116,15623582,15627145,15628517,15628710,15628839,15629697,15630110,15631111	0.571429
SK_N_DZ_cytosolic_fraction	chr10	55899875	55899888	55899875	-	High_confidence	4	4	10	0.275100	2.641604	chr10	55899641	55905708	LINE|L1|L1PA3	+	chr10	55840360	55900079	MSTRG.4060.1	-	55840360,55899633	55840479,55900079	0.600000
SK_N_DZ_cytosolic_fraction	chr16	77657032	77657070	77657032	-	High_confidence	2	3	13	0.357629	3.418296	chr16	77656914	77657359	LTR|ERVL-MaLR|MLT1K	+	chr16	77656698	77657061	MSTRG.13859.1	-	77656698	77657061	0.615385
SK_N_DZ_cytosolic_fraction	chr8	17910088	17910091	17910088	-	High_confidence	6	6	11	0.302610	2.921928	chr8	17908095	17912373	LTR|ERVK|HERVK-int	-	chr8	17864379	17910365	FGL1|ENST00000398056.6	-	17864379,17868547,17868915,17874018,17874361,17881998,17885491,17895446,17896169,17909884	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17895517,17896416,17910365	0.545455
SK_N_DZ_cytosolic_fraction	chr3	9986887	9986916	9986904	+	High_confidence	89	92	474	13.039720	7.512318	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986910	10007095	MSTRG.23960.2	+	9986910,9988711,10002716	9988007,9988747,10007095	0.951477
SK_N_DZ_cytosolic_fraction	chr16	63618045	63618046	63618045	-	High_confidence	20	25	25	0.687749	4.163856	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.680000
SK_N_DZ_cytosolic_fraction	chr19	45843031	45843053	45843052	-	High_confidence	4	4	15	0.412649	3.664498	chr19	45842924	45843320	LTR|ERVL-MaLR|MLT1K	+	chr19	45838592	45843037	SYMPK|ENST00000596518.1	-	45838592,45842249,45842708	45838615,45842489,45843037	0.800000
SK_N_DZ_cytosolic_fraction	chr14	28318015	28318044	28318036	+	High_confidence	9	10	31	0.852809	4.142295	chr14	28312502	28318523	LINE|L1|L1PA2	-	chr14	28318140	28418612	AL139023.1|ENST00000548280.1	+	28318140,28405425,28418543	28318532,28405472,28418612	0.709677
SK_N_DZ_cytosolic_fraction	chr11	66729276	66729303	66729279	-	High_confidence	13	13	53	1.458028	5.188758	chr11	66729233	66729349	SINE|MIR|MIRb	-	chr11	66715353	66729226	SPTBN2|ENST00000527010.1	-	66715353,66715829,66721083,66728740	66715395,66715981,66721262,66729226	0.943396
SK_N_DZ_cytosolic_fraction	chr5	162036540	162036565	162036564	+	RAMPAGE_only	3	3	10	0.275100	2.921928	chr5	162030925	162036952	LINE|L1|L1PA2	-	chr5	162061578	162155515	GABRG2|ENST00000638660.1	+	162061578,162093827,162095494,162097637,162101234,162103888,162142163,162149107,162151729,162153092	162061909,162093979,162095562,162097858,162101317,162104026,162142316,162149313,162151753,162155515	0.800000
SK_N_DZ_cytosolic_fraction	chr11	90240636	90240695	90240692	+	High_confidence	68	74	503	13.837508	6.881704	chr11	90240087	90241455	LINE|L1|L1P1	+	chr11	90240562	90307897	MSTRG.6456.1	+	90240562,90307880	90241441,90307897	0.974155
SK_N_DZ_cytosolic_fraction	chr14	64453833	64453855	64453854	+	RAMPAGE_only	3	4	14	0.385139	3.521641	chr14	64453898	64454014	SINE|MIR|MIR3	+	chr14	64457996	64460003	MTHFD1|ENST00000554353.1	+	64457996,64459758	64458307,64460003	0.857143
SK_N_DZ_cytosolic_fraction	chr1	156367865	156367913	156367878	-	High_confidence	584	923	2798	76.972859	7.010557	chr1	156367719	156368094	LINE|L2|L2c	+	chr1	156320839	156367873	CCT3|ENST00000446905.5	-	156320839,156324971,156333546,156335826,156367743	156321025,156325089,156333643,156335888,156367873	0.900286
SK_N_DZ_cytosolic_fraction	chr8	120125636	120125648	120125636	+	High_confidence	19	19	44	1.210438	4.868508	chr8	120125674	120125869	DNA|hAT-Tip100?|MamRep1879	+	chr8	120125143	120277865	COL14A1|ENST00000432943.6	+	120125143,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120277484	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120277865	0.954545
SK_N_DZ_cytosolic_fraction	chr12	119303367	119303384	119303383	-	High_confidence	7	8	14	0.385139	3.807355	chr12	119303160	119303524	LTR|ERVL-MaLR|MLT1K	-	chr12	119283824	119303380	LINC00934|NR_024246.2	-	119283824,119284771,119301608,119303334	119284681,119285736,119302031,119303380	0.500000
SK_N_DZ_cytosolic_fraction	chr1	247905578	247905584	247905583	-	High_confidence	6	6	11	0.302610	3.121928	chr1	247905434	247905895	LTR|ERV1|LTR2	-	chr1	247898417	247905575	MSTRG.3477.1	-	247898417,247905190	247902952,247905575	0.727273
SK_N_DZ_cytosolic_fraction	chr1	1655444	1655474	1655448	-	RAMPAGE_only	3	3	13	0.357629	3.584963	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.692308
SK_N_DZ_cytosolic_fraction	chr15	51603692	51603702	51603701	-	High_confidence	40	42	76	2.090757	5.626621	chr15	51603584	51603891	SINE|Alu|AluY	+	chr15	51457371	51603701	MSTRG.11501.12	-	51457371,51458505,51458708,51463378,51464674,51465565,51466183,51471222,51474343,51476588,51478270,51479947,51480541,51486072,51487953,51488547,51491577,51495023,51498551,51502805,51507133,51514441,51517077,51535662,51536165,51537487,51538212,51542332,51545582,51547229,51563380,51564124,51565087,51568486,51576055,51603606	51457466,51458627,51458795,51463496,51464876,51465651,51466311,51471401,51474592,51476716,51478347,51480139,51481623,51486337,51488119,51488645,51491747,51495134,51500231,51503033,51507253,51514559,51517167,51535784,51536862,51537759,51538452,51542507,51545766,51547408,51563447,51564260,51565166,51568558,51576181,51603701	0.960526
SK_N_DZ_cytosolic_fraction	chrX	72305913	72305914	72305913	-	High_confidence	10	11	11	0.302610	2.846439	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	0.909091
SK_N_DZ_cytosolic_fraction	chr6	152717584	152717585	152717584	+	RAMPAGE_only	7	7	7	0.192570	2.521641	chr6	152717403	152717757	LTR|ERVL-MaLR|THE1B	+	chr6	152697960	152724501	MYCT1|ENST00000532295.1	+	152697960,152721741,152722762	152698098,152722253,152724501	0.714286
SK_N_DZ_cytosolic_fraction	chr17	61952964	61952979	61952970	-	RAMPAGE_only	2	2	8	0.220080	2.521641	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.875000
SK_N_DZ_cytosolic_fraction	chr4	103255833	103255846	103255833	+	High_confidence	4	4	14	0.385139	3.664498	chr4	103250265	103256290	LINE|L1|L1PA2	-	chr4	103256158	103453658	LINC02428|ENST00000513793.5	+	103256158,103425054,103436934,103453599	103256294,103425185,103437046,103453658	0.500000
SK_N_DZ_cytosolic_fraction	chr4	174158510	174158511	174158510	-	RAMPAGE_only	7	7	7	0.192570	2.521641	chr4	174158343	174158681	LTR|ERVL-MaLR|MLT1A0	-	chr4	174135054	174154637	AC012055.1|ENST00000511346.1	-	174135054,174154586	174136147,174154637	0.714286
SK_N_DZ_cytosolic_fraction	chrX	53379108	53379155	53379154	-	RAMPAGE_only	4	5	17	0.467669	3.452820	chrX	53379150	53379303	SINE|MIR|MIR	-	chrX	53374148	53422728	SMC1A|ENST00000322213.8	-	53374148,53380619,53381017,53382231,53382505,53383096,53394777,53396226,53396471,53399588,53403565,53403776,53405011,53405244,53405492,53405770,53409061,53409420,53411760,53411994,53412899,53413231,53414757,53414980,53422491	53380186,53380730,53381087,53382383,53382660,53383253,53394888,53396380,53396617,53399730,53403672,53403893,53405149,53405391,53405672,53405956,53409269,53409503,53411901,53412253,53413138,53413435,53414870,53415169,53422728	0.941176
SK_N_DZ_cytosolic_fraction	chr9	128185577	128185578	128185577	-	RAMPAGE_only	18	18	18	0.495179	3.683542	chr9	128185400	128185541	SINE|MIR|MIR3	-	chr9	128166151	128190710	CIZ1|ENST00000415526.5	-	128166151,128166758,128167094,128169051,128169405,128170019,128176350,128177565,128178368,128178708,128180414,128180720,128185546,128190328,128190687	128166406,128166880,128167164,128169201,128169519,128170107,128176475,128177763,128178490,128179415,128180523,128180799,128185776,128190444,128190710	1.000000
SK_N_DZ_cytosolic_fraction	chr4	56147993	56148023	56147993	+	RAMPAGE_only	2	2	9	0.247590	2.947703	chr4	56147833	56148221	LTR|ERVL-MaLR|MLT1B	+	chr4	56170194	56328625	KIAA1211|ENST00000264229.11	+	56170194,56179283,56272320,56298213,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56170250,56179430,56272492,56298349,56307699,56310734,56313379,56316689,56323567,56324266,56328625	0.666667
SK_N_DZ_cytosolic_fraction	chr11	93733796	93733815	93733796	-	High_confidence	3	3	10	0.275100	2.725481	chr11	93733698	93733829	SINE|Alu|AluJo	-	chr11	93730282	93734661	TAF1D|ENST00000525928.5	-	93730282,93730676,93731149,93731752,93732243,93733086,93733349	93730447,93730712,93731216,93731799,93732291,93733121,93734661	0.800000
SK_N_DZ_nuclear_fraction	chr11	93733829	93733849	93733847	-	High_confidence	2	5	8	0.606229	2.750000	chr11	93733698	93733829	SINE|Alu|AluJo	-	chr11	93731160	93733597	MSTRG.7783.15	-	93731160,93731752,93732243,93733349	93731216,93731799,93733121,93733597	1.000000
SK_N_DZ_nuclear_fraction	chr7	10973323	10973336	10973335	+	High_confidence	37	37	89	6.744296	5.606249	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.685393
SK_N_DZ_nuclear_fraction	chr8	2727243	2727272	2727253	+	High_confidence	12	13	50	3.788930	4.566055	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.660000
SK_N_DZ_nuclear_fraction	chr5	97089021	97089048	97089047	+	High_confidence	3	3	13	0.985122	3.251629	chr5	97088919	97089287	LTR|ERVL-MaLR|THE1B	+	chr5	97089074	97437217	LIX1-AS1|ENST00000504578.2	+	97089074,97101758,97103025,97183007,97183504,97431743,97436552	97089204,97102132,97103094,97183240,97183669,97431900,97437217	0.769231
SK_N_DZ_nuclear_fraction	chr8	86822483	86822484	86822483	+	RAMPAGE_only	21	23	24	1.818687	4.175736	chr8	86822298	86822668	LTR|ERVL-MaLR|THE1D	+	chr8	86866444	87382859	CNBD1|ENST00000518476.5	+	86866444,86887541,86905080,86939595,87205992,87236918,87284677,87286538,87351684,87353635,87382619	86866583,86887611,86905194,86939754,87206138,87237112,87284815,87286671,87351794,87353786,87382859	0.750000
SK_N_DZ_nuclear_fraction	chr11	94237966	94237990	94237976	-	High_confidence	13	23	56	4.243602	5.307355	chr11	94232524	94238528	LINE|L1|L1PA2	-	chr11	94237285	94237740	MSTRG.7748.1	-	94237285	94237740	0.500000
SK_N_DZ_nuclear_fraction	chr5	23951347	23951372	23951371	+	High_confidence	36	36	207	15.686171	6.663261	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178760	MSTRG.33806.1	+	23951347,23975996,23977780,24177836	23951803,23976050,23980841,24178760	0.545894
SK_N_DZ_nuclear_fraction	chr2	6918666	6918680	6918679	-	High_confidence	18	18	33	2.500694	4.413910	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.636364
SK_N_DZ_nuclear_fraction	chr2	15981654	15981655	15981654	-	High_confidence	109	112	137	10.381669	4.829567	chr2	15981345	15981655	SINE|Alu|AluSq2	-	chr2	15981278	15981649	MSTRG.23035.1	-	15981278	15981649	0.956204
SK_N_DZ_nuclear_fraction	chr13	29647179	29647198	29647179	+	High_confidence	1	1	7	0.530450	2.584963	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.571429
SK_N_DZ_nuclear_fraction	chr1	168354714	168354856	168354772	+	High_confidence	20	20	215	16.292400	7.031267	chr1	168348862	168354879	LINE|L1|L1PA2	-	chr1	168354416	168582077	MSTRG.3039.5	+	168354416,168379608,168559605,168567929,168580062,168581051	168354910,168379782,168567876,168576698,168580177,168582077	0.655814
SK_N_DZ_nuclear_fraction	chr11	61949785	61949821	61949820	+	High_confidence	6	6	19	1.439793	3.572431	chr11	61949804	61949945	SINE|MIR|MIR3	-	chr11	61949820	61964461	BEST1|ENST00000378043.8	+	61949820,61951770,61955106,61955717,61956843,61957386,61958145,61959497,61959891,61962254,61964103	61950427,61951958,61955201,61955951,61956998,61957464,61958298,61959578,61960043,61962893,61964461	0.736842
SK_N_DZ_nuclear_fraction	chr7	47629309	47629310	47629309	+	RAMPAGE_only	13	13	14	1.060900	3.334679	chr7	47628295	47629715	LTR|ERV1|LTR12C	+	chr7	47621938	47629893	LINC01447|NR_108090.1	+	47621938,47623111,47627260,47628696	47622337,47623734,47627802,47629893	0.857143
SK_N_DZ_nuclear_fraction	chr4	61646811	61646926	61646857	+	RAMPAGE_only	25	33	220	16.671293	6.023096	chr4	61641294	61647303	LINE|L1|L1PA3	-	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.645455
SK_N_DZ_nuclear_fraction	chr2	40453541	40453547	40453546	-	High_confidence	236	243	430	32.584800	6.357232	chr2	40453521	40453703	DNA|hAT-Charlie|MER5B	+	chr2	40097269	40453537	MSTRG.23435.1	-	40097269,40139400,40160764,40164853,40174824,40177751,40428472,40451903,40453160	40115629,40139676,40160864,40164984,40174842,40177855,40430304,40452016,40453537	0.890698
SK_N_DZ_nuclear_fraction	chr7	42960995	42961008	42961000	-	RAMPAGE_only	7	8	34	2.576473	4.690117	chr7	42960777	42961015	LTR|ERV1|HERV35I-int	-	chr7	42954134	42963343	AC005537.1|ENST00000588324.1	-	42954134,42955376,42955954,42959928,42961338,42962967	42954485,42955457,42956132,42959990,42961528,42963343	0.647059
SK_N_DZ_nuclear_fraction	chr13	52570267	52570280	52570279	+	RAMPAGE_only	7	8	16	1.212458	3.139572	chr13	52569964	52570306	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.750000
SK_N_DZ_nuclear_fraction	chr3	169812903	169812922	169812903	-	High_confidence	45	45	69	5.228724	4.203826	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.884058
SK_N_DZ_nuclear_fraction	chr8	66926430	66926456	66926449	-	High_confidence	5	8	25	1.894465	3.849224	chr8	66926412	66926708	SINE|Alu|AluY	-	chr8	66922017	66926398	SNHG6|ENST00000520619.1	-	66922017,66922323,66922613,66926197	66922114,66922392,66922725,66926398	0.760000
SK_N_DZ_nuclear_fraction	chr4	105145844	105145875	105145844	+	High_confidence	2	2	10	0.757786	2.947703	chr4	105145828	105145941	DNA|TcMar-Tigger|Tigger19b	+	chr4	105145874	105242771	TET2|ENST00000305737.6	+	105145874,105190359,105233896	105146086,105190505,105242771	0.700000
SK_N_DZ_nuclear_fraction	chr2	124403797	124403825	124403797	+	RAMPAGE_only	4	4	9	0.682007	2.500000	chr2	124403717	124404080	LTR|ERVL-MaLR|THE1B	-	chr2	124025286	124915377	CNTNAP5|NM_130773.3	+	124025286,124221704,124242199,124417442,124434483,124446752,124474738,124504291,124524302,124527284,124563216,124609800,124647757,124747228,124763671,124763976,124772798,124789901,124798095,124865305,124869674,124902881,124911466,124914091	124025732,124221809,124242393,124417590,124434687,124446937,124474879,124504556,124524452,124527456,124563323,124609920,124647958,124747385,124763799,124764147,124773017,124790141,124798320,124865436,124869762,124903100,124911538,124915377	0.888889
SK_N_DZ_nuclear_fraction	chr17	17670945	17670947	17670946	+	High_confidence	35	39	53	4.016266	5.213661	chr17	17670988	17671157	LTR|ERVL-MaLR|MLT1D	+	chr17	17671001	17810689	MSTRG.17442.1	+	17671001,17680973,17724027,17792932,17803755,17809389,17809969	17671079,17681125,17724159,17798513,17803849,17809439,17810689	0.509434
SK_N_DZ_nuclear_fraction	chrX	73893294	73893313	73893312	-	RAMPAGE_only	5	7	20	1.515572	2.897849	chrX	73892229	73895710	LINE|L1|L1PA7	+	chrX	73820650	73852753	XIST|NR_001564.2	-	73820650,73829067,73831065,73833237,73837439,73841381	73827984,73829231,73831274,73833374,73837503,73852753	0.700000
SK_N_DZ_nuclear_fraction	chr16	67161113	67161134	67161113	+	RAMPAGE_only	2	2	6	0.454672	2.584963	chr16	67161158	67161467	SINE|Alu|AluJo	+	chr16	67159972	67167917	MSTRG.16339.5	+	67159972,67161734,67162847,67164018,67164440,67165718,67165945,67166557,67167119,67167823	67160056,67161937,67163852,67164144,67165630,67165846,67166395,67166622,67167599,67167917	0.500000
SK_N_DZ_nuclear_fraction	chr4	95000465	95000481	95000480	+	RAMPAGE_only	8	8	18	1.364015	3.725481	chr4	95000399	95000534	SINE|Alu|AluSc	+	chr4	94996231	95154673	BMPR1B|ENST00000512312.5	+	94996231,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547	94996384,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95154673	0.555556
SK_N_DZ_nuclear_fraction	chr17	50737451	50737469	50737468	+	RAMPAGE_only	6	7	12	0.909343	3.027169	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50744660	50750847	LUC7L3|ENST00000504065.5	+	50744660,50745719,50746541,50749218,50750500	50744813,50746003,50746702,50749344,50750847	0.750000
SK_N_DZ_nuclear_fraction	chr1	147517874	147517875	147517874	-	High_confidence	51	59	64	4.849831	5.277060	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147258884	147517875	LINC00624|ENST00000619867.4	-	147258884,147384667,147408589,147514337,147515520,147517442	147260976,147384863,147408689,147514448,147515676,147517875	0.578125
SK_N_DZ_nuclear_fraction	chr16	58755976	58755977	58755976	-	RAMPAGE_only	7	7	7	0.530450	2.807355	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
SK_N_DZ_nuclear_fraction	chr5	140700445	140700452	140700445	+	High_confidence	300	372	753	57.061289	4.664114	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.956175
SK_N_DZ_nuclear_fraction	chr5	134341746	134341758	134341757	-	RAMPAGE_only	7	7	14	1.060900	2.873141	chr5	134341492	134342129	LTR|ERV1|LTR9	+	chr5	134308000	134319389	CDKL3|ENST00000520592.1	-	134308000,134308573,134319357	134308466,134308727,134319389	0.571429
SK_N_DZ_nuclear_fraction	chr2	95852418	95852462	95852418	-	RAMPAGE_only	1	1	12	0.909343	2.550341	chr2	95852342	95852526	DNA|hAT-Charlie|MER58A	+	chr2	95836918	95855377	ANKRD36C|ENST00000612359.4	-	95836918,95851165,95851693,95852125,95853708,95855265	95837108,95851195,95851787,95852196,95853861,95855377	0.833333
SK_N_DZ_nuclear_fraction	chr17	64930246	64930291	64930274	+	High_confidence	8	8	18	1.364015	3.572469	chr17	64930021	64930983	LTR|ERVK|LTR5_Hs	+	chr17	64930148	64934203	AC103810.1|ENST00000583052.1	+	64930148,64930717,64931202,64934042	64930350,64930868,64931287,64934203	0.722222
SK_N_DZ_nuclear_fraction	chr15	41365745	41365769	41365745	+	High_confidence	4	4	13	0.985122	2.584963	chr15	41365708	41366019	SINE|Alu|AluSc8	-	chr15	41365746	41377288	NUSAP1|ENST00000560318.1	+	41365746,41371526,41375711,41377195	41365863,41371684,41375828,41377288	0.923077
SK_N_DZ_nuclear_fraction	chr10	123350854	123350855	123350854	-	High_confidence	7	7	8	0.606229	2.521641	chr10	123350740	123350906	SINE|MIR|MIR	+	chr10	123346943	123351544	MSTRG.5879.2	-	123346943	123351544	0.625000
SK_N_DZ_nuclear_fraction	chr15	80059918	80059933	80059918	+	High_confidence	19	19	43	3.258480	4.018606	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.976744
SK_N_DZ_nuclear_fraction	chr10	107643223	107643290	107643223	-	RAMPAGE_only	4	4	28	2.121801	3.950064	chr10	107642604	107643383	LTR|ERVL|ERV3-16A3_I-int	-	chr10	107625748	107648905	MSTRG.5673.7	-	107625748,107639984	107638362,107648905	0.928571
SK_N_DZ_nuclear_fraction	chr22	39320299	39320346	39320334	-	High_confidence	11	11	86	6.516960	5.217751	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.918605
SK_N_DZ_nuclear_fraction	chr3	135965723	135965773	135965723	+	High_confidence	14	16	100	7.577860	5.206628	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	1.000000
SK_N_DZ_nuclear_fraction	chr1	224962407	224962454	224962453	+	RAMPAGE_only	2	3	8	0.606229	2.750000	chr1	224962129	224962686	LTR|ERVL-MaLR|MLT1E1A	+	chr1	224955038	224967924	DNAH14|ENST00000433124.1	+	224955038,224964478,224967430,224967679	224955098,224964609,224967583,224967924	0.625000
SK_N_DZ_nuclear_fraction	chr15	92079689	92079690	92079689	+	RAMPAGE_only	8	8	8	0.606229	2.750000	chr15	92079688	92079854	SINE|MIR|MIRc	-	chr15	92900320	92902402	CHD2|ENST00000627622.1	+	92900320,92901166	92900824,92902402	0.625000
SK_N_DZ_nuclear_fraction	chr18	80148048	80148049	80148048	+	High_confidence	65	66	71	5.380281	5.515669	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.619718
SK_N_DZ_nuclear_fraction	chr16	72627763	72627766	72627765	-	RAMPAGE_only	3	5	8	0.606229	2.521641	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.875000
SK_N_DZ_nuclear_fraction	chr2	15594804	15594826	15594819	+	RAMPAGE_only	7	8	16	1.212458	3.106891	chr2	15594811	15595018	SINE|MIR|MIRb	-	chr2	15591620	15631111	DDX1|NM_004939.2	+	15591620,15595144,15595489,15596733,15597374,15599668,15602547,15603191,15603813,15604436,15605949,15606149,15607174,15613223,15617243,15618180,15620207,15621064,15623435,15627053,15628444,15628637,15628796,15629601,15629989,15630775	15591949,15595196,15595553,15596763,15597471,15599716,15602631,15603275,15603890,15604509,15606026,15606264,15607313,15613284,15617342,15618270,15620396,15621116,15623582,15627145,15628517,15628710,15628839,15629697,15630110,15631111	0.625000
SK_N_DZ_nuclear_fraction	chr7	107580242	107580265	107580245	+	High_confidence	185	185	880	66.685172	7.043075	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.812500
SK_N_DZ_nuclear_fraction	chr8	99892056	99892057	99892056	-	RAMPAGE_only	78	78	97	7.350525	4.176335	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.979381
SK_N_DZ_nuclear_fraction	chr8	140087937	140087961	140087937	-	RAMPAGE_only	3	3	20	1.515572	3.721612	chr8	140086947	140088309	LINE|L2|L2b	+	chr8	139732161	140082153	TRAPPC9|ENST00000523777.5	-	139732161,139885878,139910146,139988725,140023936,140081988	139732202,139885969,139910300,139988836,140024079,140082153	0.700000
SK_N_DZ_nuclear_fraction	chr3	9986887	9986916	9986904	+	High_confidence	33	36	129	9.775440	5.775509	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986910	10007004	MSTRG.29260.3	+	9986910,9998454,9998775	9988747,9998572,10007004	0.968992
SK_N_DZ_nuclear_fraction	chr11	17352281	17352298	17352281	+	High_confidence	37	39	90	6.820074	5.790121	chr11	17352168	17352474	SINE|Alu|AluY	-	chr11	17352299	17383531	MSTRG.6460.3	+	17352299,17356650,17367008,17368866,17372005	17352683,17357001,17367347,17368964,17383531	0.522222
SK_N_DZ_nuclear_fraction	chr1	207768130	207768229	207768130	+	High_confidence	3	3	17	1.288236	3.155639	chr1	207768016	207768181	SINE|MIR|MIRb	+	chr1	207768117	207794780	CD46|ENST00000636114.1	+	207768117,207770320,207783291,207785070,207785618,207793518	207768772,207770362,207783330,207785106,207785682,207794780	0.882353
SK_N_DZ_nuclear_fraction	chr3	101466874	101466892	101466874	-	RAMPAGE_only	6	6	15	1.136679	3.324863	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.933333
SK_N_DZ_nuclear_fraction	chr9	62897430	62897431	62897430	+	High_confidence	76	76	106	8.032532	5.608739	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.773585
SK_N_DZ_nuclear_fraction	chr1	147173173	147173226	147173173	+	High_confidence	16	16	98	7.426303	5.797984	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.663265
SK_N_DZ_nuclear_fraction	chr17	50737315	50737409	50737376	+	RAMPAGE_only	3	3	26	1.970244	4.238901	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50719628	50751004	LUC7L3|ENST00000508482.5	+	50719628,50740305,50741101,50741656,50743705,50744651,50745719,50746541,50750500,50750723	50719831,50740345,50741246,50741731,50743810,50744813,50746003,50746702,50750641,50751004	0.846154
SK_N_DZ_nuclear_fraction	chr7	93591062	93591106	93591104	+	High_confidence	6	12	22	1.667129	2.763865	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591291	93811382	MSTRG.39389.1	+	93591291,93807203	93591771,93811382	0.909091
SK_N_DZ_nuclear_fraction	chr12	93773411	93773427	93773411	+	RAMPAGE_only	4	4	8	0.606229	2.500000	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.625000
SK_N_DZ_nuclear_fraction	chr10	101730060	101730139	101730118	-	High_confidence	31	39	149	11.291012	5.008829	chr10	101729855	101730163	SINE|Alu|AluY	+	chr10	101701507	101730111	MSTRG.5544.2	-	101701507,101729716	101702295,101730111	0.832215
SK_N_DZ_nuclear_fraction	chr11	44695212	44695251	44695212	-	RAMPAGE_only	5	5	22	1.667129	4.061482	chr11	44695126	44695254	LINE|L1|L1ME3F	-	chr11	44694862	44696301	AC104241.2|ENST00000532748.1	-	44694862,44696220	44695570,44696301	0.545455
SK_N_DZ_nuclear_fraction	chr7	93148874	93148907	93148878	+	High_confidence	39	40	171	12.958141	5.845946	chr7	93148692	93148966	LTR|ERVL-MaLR|MLT1B	+	chr7	93148918	93149511	MSTRG.39382.1	+	93148918	93149511	0.807018
SK_N_DZ_nuclear_fraction	chr2	55618850	55618889	55618850	-	High_confidence	9	9	39	2.955366	4.681881	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.974359
SK_N_DZ_nuclear_fraction	chr7	18821770	18821810	18821770	-	High_confidence	7	7	35	2.652251	3.229429	chr7	18821561	18822326	LTR|ERVL|MER21C	-	chr7	18790584	18821513	MSTRG.38416.2	-	18790584,18800707,18803391,18810122,18820978	18793496,18800805,18805863,18810172,18821513	0.885714
SK_N_DZ_nuclear_fraction	chr2	153871921	153871947	153871921	+	High_confidence	37	37	81	6.138067	4.845101	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.876543
SK_N_DZ_nuclear_fraction	chrX	73825450	73825479	73825450	-	RAMPAGE_only	4	4	22	1.667129	3.821928	chrX	73825410	73825452	SINE|MIR|MIRc	-	chrX	73823336	73829691	XIST|ENST00000649757.1	-	73823336,73829067	73827984,73829691	0.863636
SK_N_DZ_nuclear_fraction	chr19	58306086	58306087	58306086	+	High_confidence	8	8	8	0.606229	2.750000	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58315202	MSTRG.22678.36	+	58305376,58306087,58314747	58305445,58312462,58315202	1.000000
SK_N_DZ_nuclear_fraction	chr11	5505651	5505652	5505651	-	High_confidence	15	15	17	1.288236	3.616875	chr11	5505485	5505844	LTR|ERVL-MaLR|THE1B	-	chr11	5268344	5505652	HBE1|ENST00000292896.3	-	5268344,5269453,5269798,5505568	5268597,5269676,5270156,5505652	0.529412
SK_N_DZ_nuclear_fraction	chr19	46413516	46413612	46413611	-	High_confidence	9	9	55	4.167823	4.829625	chr19	46413579	46413731	LTR|Gypsy|LTR104_Mam	-	chr19	46410378	46413564	CCDC8|ENST00000307522.4	-	46410378	46413564	0.963636
SK_N_DZ_nuclear_fraction	chr12	86384071	86384110	86384071	+	High_confidence	106	123	282	21.369566	6.891155	chr12	86383894	86384235	LTR|ERVL-MaLR|THE1B	+	chr12	86384028	86480901	MSTRG.9903.1	+	86384028,86462332	86384152,86480901	0.631206
SK_N_DZ_nuclear_fraction	chr10	102449836	102449845	102449844	+	High_confidence	7	8	15	1.136679	3.378783	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449844	102456292	MSTRG.5580.3	+	102449844,102455336	102451018,102456292	0.933333
SK_N_DZ_nuclear_fraction	chr2	15590772	15590798	15590772	+	High_confidence	10	10	38	2.879587	4.023141	chr2	15590742	15590919	SINE|Alu|AluSc8	-	chr2	15591177	15631111	DDX1|ENST00000381341.6	+	15591177,15591653,15595144,15595489,15596733,15597374,15599668,15602547,15603191,15603813,15604436,15605949,15606149,15607174,15613223,15617243,15618180,15620207,15621064,15623435,15627053,15628444,15628637,15628796,15629601,15629989,15630775	15591286,15591949,15595196,15595553,15596763,15597471,15599716,15602631,15603275,15603890,15604509,15606026,15606264,15607313,15613284,15617342,15618270,15620396,15621116,15623582,15627145,15628517,15628710,15628839,15629697,15630110,15631111	0.815789
SK_N_DZ_nuclear_fraction	chr2	206161379	206161467	206161466	+	High_confidence	7	7	36	2.728030	4.315623	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	1.000000
SK_N_DZ_nuclear_fraction	chr22	30975200	30975380	30975304	+	RAMPAGE_only	8	8	79	5.986510	3.779655	chr22	30975231	30975411	DNA|hAT-Charlie|Charlie15a	-	chr22	30972262	30976063	TUG1|ENST00000602393.1	+	30972262,30975169	30973601,30976063	0.974684
SK_N_DZ_nuclear_fraction	chr9	15883048	15883082	15883076	+	RAMPAGE_only	5	5	20	1.515572	3.508695	chr9	15883037	15883358	SINE|Alu|AluJr	-	chr9	15887794	15973512	MSTRG.42305.8	+	15887794,15888982,15920269,15971608	15888088,15889101,15920422,15973512	0.500000
SK_N_DZ_nuclear_fraction	chr10	107898284	107898522	107898521	-	RAMPAGE_only	8	8	79	5.986510	4.247052	chr10	107898497	107898724	LINE|CR1|L3	+	chr10	107895878	107918373	MSTRG.5673.22	-	107895878,107901008,107918065	107899503,107901087,107918373	0.987342
SK_N_DZ_nuclear_fraction	chr19	571725	571774	571754	-	High_confidence	19	22	86	6.516960	5.625518	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.697674
SK_N_DZ_nuclear_fraction	chr20	18794077	18794086	18794085	+	High_confidence	127	128	271	20.536002	4.961355	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.992620
SK_N_DZ_nuclear_fraction	chr7	65313653	65313680	65313653	+	RAMPAGE_only	2	2	11	0.833565	3.095795	chr7	65313643	65314521	LTR|ERV1|LTR70	+	chr7	65269373	65326652	MSTRG.38955.2	+	65269373,65303528,65313569,65317446	65269538,65303802,65313753,65326652	0.636364
SK_N_DZ_nuclear_fraction	chr2	218287266	218287280	218287279	-	High_confidence	3	3	8	0.606229	2.750000	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.875000
SK_N_DZ_nuclear_fraction	chr7	148437542	148437543	148437542	-	High_confidence	9	9	11	0.833565	2.913977	chr7	148436928	148437780	LTR|ERV1|LTR1A2	-	chr7	148391661	148436757	MSTRG.40190.2	-	148391661,148394590,148436558	148391781,148394692,148436757	0.545455
SK_N_DZ_nuclear_fraction	chr15	33194680	33194709	33194695	-	High_confidence	51	54	217	16.443957	6.464739	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.732719
SK_N_DZ_nuclear_fraction	chr12	15001805	15001826	15001825	+	High_confidence	3	3	8	0.606229	3.000000	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.500000
SK_N_DZ_nuclear_fraction	chr3	169813007	169813015	169813007	-	High_confidence	4	4	10	0.757786	2.947703	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812986	LRRC34|ENST00000522526.6	-	169793472,169795484,169796213,169796744,169804052,169806847,169807425,169807587,169808627,169812409	169793838,169795611,169796369,169796899,169804181,169806931,169807490,169807709,169808745,169812986	0.900000
SK_N_DZ_nuclear_fraction	chr2	180692008	180692009	180692008	+	High_confidence	187	187	197	14.928385	4.940481	chr2	180691204	180692425	LTR|ERV1|LTR12C	+	chr2	180692103	180916939	SCHLAP1|NR_104322.1	+	180692103,180724595,180725190,180823932,180827240,180899649,180916272	180692441,180724690,180725291,180824070,180827507,180899718,180916939	0.903553
SK_N_DZ_nuclear_fraction	chr9	128921399	128921400	128921399	+	High_confidence	64	66	90	6.820074	5.500520	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.811111
SK_N_DZ_nuclear_fraction	chr3	33827636	33827686	33827685	+	RAMPAGE_only	3	3	11	0.833565	2.913977	chr3	33827534	33827758	SINE|5S-Deu-L2|AmnSINE1	-	chr3	33811062	33864117	MSTRG.29632.11	+	33811062,33812071,33813558,33821954,33825186,33826479,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005	33811191,33812126,33813628,33822082,33825340,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864117	1.000000
SK_N_DZ_nuclear_fraction	chr7	18173551	18173559	18173551	+	RAMPAGE_only	4	4	14	1.060900	3.182006	chr7	18169457	18175596	LINE|L1|L1PA6	-	chr7	18086948	18666923	HDAC9|ENST00000417496.6	+	18086948,18162228,18458841,18496261,18585280,18590344,18591515,18593907,18634626,18644670,18647784,18648465,18666212	18087213,18162349,18458901,18496324,18585522,18590486,18591642,18594029,18634742,18644793,18647998,18648683,18666923	0.500000
SK_N_DZ_nuclear_fraction	chr19	48868613	48868666	48868630	-	High_confidence	67	68	289	21.900017	6.459384	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868632	PLEKHA4|ENST00000263265.10	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868632	0.986159
SK_N_DZ_nuclear_fraction	chr21	38121741	38121753	38121741	+	High_confidence	4	4	9	0.682007	2.750000	chr21	38121639	38121787	SINE|Alu|AluSp	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.666667
SK_N_DZ_nuclear_fraction	chr16	4355592	4355593	4355592	-	High_confidence	450	458	458	34.706601	4.435958	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.982533
SK_N_DZ_nuclear_fraction	chr1	168354472	168354509	168354508	+	High_confidence	5	5	18	1.364015	3.734522	chr1	168348862	168354879	LINE|L1|L1PA2	-	chr1	168354416	168582077	MSTRG.3039.5	+	168354416,168379608,168559605,168567929,168580062,168581051	168354910,168379782,168567876,168576698,168580177,168582077	0.611111
SK_N_DZ_nuclear_fraction	chr6	37423962	37423988	37423984	+	RAMPAGE_only	84	84	219	16.595514	6.710442	chr6	37423607	37424237	LTR|ERV1|LTR9	-	chr6	37433130	37481508	CMTR1|NM_015050.2	+	37433130,37435623,37443998,37446290,37450250,37451805,37453046,37453239,37458611,37459565,37461548,37461969,37462828,37471020,37471846,37472418,37473469,37474523,37475320,37476125,37477591,37478408,37479146,37480012	37433377,37435762,37444150,37446449,37450343,37451877,37453141,37453312,37458810,37459684,37461645,37462102,37463008,37471077,37471904,37472487,37473601,37474646,37475412,37476194,37477639,37478521,37479255,37481508	0.557078
SK_N_DZ_nuclear_fraction	chr15	33209941	33209944	33209941	-	RAMPAGE_only	145	168	222	16.822850	6.599584	chr15	33209762	33210129	LTR|ERVL-MaLR|THE1D	-	chr15	32765543	33194733	FMN1|NM_001277313.1	-	32765543,32776834,32798803,32804280,32857014,32888171,32898833,32899978,32901910,32908489,32910473,32926173,32964106,32968713,33008013,33064956,33088798,33153047,33180197,33193908,33194577	32774354,32776919,32798953,32804332,32857107,32888292,32898893,32900125,32902040,32908578,32910535,32926261,32964257,32969477,33008075,33065074,33088974,33155045,33180262,33194060,33194733	0.657658
SK_N_DZ_nuclear_fraction	chr3	183116041	183116042	183116041	-	High_confidence	7	7	7	0.530450	2.521641	chr3	183115868	183116225	LTR|ERV1|MER51E	-	chr3	183015217	183116075	MCCC1|ENST00000492597.5	-	183015217,183017265,183020129,183022416,183025754,183033990,183037217,183039025,183041566,183045412,183052158,183057310,183070998,183071209,183072365,183086692,183094558,183115473	183015566,183017337,183020237,183022554,183025804,183034077,183037434,183039135,183041750,183045540,183052240,183057422,183071120,183071357,183072487,183086788,183094605,183116075	0.857143
SK_N_DZ_nuclear_fraction	chr2	84563065	84563066	84563065	+	RAMPAGE_only	19	23	24	1.818687	4.095795	chr2	84562873	84563235	LTR|ERVL-MaLR|THE1B	+	chr2	84517822	84584791	DNAH6|ENST00000494025.1	+	84517822,84548287,84549888,84552917,84557734,84573466,84577256,84579526,84583998	84518051,84548417,84550057,84553034,84557935,84573587,84577408,84579679,84584791	0.750000
SK_N_DZ_nuclear_fraction	chr3	28059906	28059935	28059906	-	High_confidence	3	3	10	0.757786	2.646439	chr3	28059242	28065270	LINE|L1|L1PA3	+	chr3	27952470	28059695	MSTRG.29536.4	-	27952470,28059241	27952845,28059695	0.700000
SK_N_DZ_nuclear_fraction	chr22	47631678	47631784	47631710	+	High_confidence	20	27	136	10.305890	6.151739	chr22	47631336	47631805	LTR|ERVL|MLT2B1	-	chr22	47631673	47855600	AL117329.1|ENST00000423737.5	+	47631673,47635179,47686199,47686574,47686802,47687140,47704588,47738433,47854910	47631886,47635353,47686312,47686695,47686938,47687206,47704747,47738576,47855600	0.573529
SK_N_DZ_nuclear_fraction	chr3	80770347	80770413	80770347	-	High_confidence	209	221	889	67.367179	7.278900	chr3	80769735	80770387	LTR|ERV1|LTR1A1	-	chr3	80633662	80770371	MSTRG.30380.1	-	80633662,80761437,80769758	80633971,80761573,80770371	0.870641
SK_N_DZ_nuclear_fraction	chr20	36098384	36098385	36098384	-	RAMPAGE_only	7	7	7	0.530450	2.807355	chr20	36098310	36098737	LTR|ERVL-MaLR|MLT1C	-	chr20	35703608	35742336	RBM39|NM_001323423.1	-	35703608,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940,35734185,35738967,35740524,35740823,35741940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732135,35734257,35739017,35740597,35740887,35742336	0.857143
SK_N_DZ_nuclear_fraction	chr5	21341812	21341855	21341837	+	High_confidence	10	11	57	4.319380	4.485370	chr5	21341224	21342284	LTR|ERV1|LTR12E	+	chr5	21341832	21544777	GUSBP1|ENST00000508260.5	+	21341832,21405684,21459677,21461782,21491320,21495097,21497021,21501691,21544718	21341976,21405760,21459743,21461866,21491508,21495182,21497196,21501826,21544777	0.561404
SK_N_DZ_nuclear_fraction	chr16	4894871	4894891	4894890	-	RAMPAGE_only	4	5	15	1.136679	3.324863	chr16	4894801	4895209	LTR|ERVL-MaLR|MLT1K	+	chr16	4882822	4937064	PPL|ENST00000590782.6	-	4882822,4887134,4888101,4888977,4890183,4890727,4891810,4892034,4893212,4893540,4894466,4895260,4895593,4897674,4899012,4899222,4900829,4900963,4902405,4903885,4910849,4936983	4886047,4887227,4888218,4889061,4890334,4890921,4891949,4892213,4893370,4893638,4894618,4895407,4895716,4897770,4899120,4899384,4900865,4901089,4902526,4904040,4910949,4937064	0.866667
SK_N_DZ_nuclear_fraction	chr7	100102081	100102109	100102108	+	High_confidence	10	10	22	1.667129	3.629220	chr7	100102098	100102390	SINE|Alu|AluSx1	+	chr7	100102085	100103296	AP4M1|ENST00000495154.1	+	100102085,100102674,100102863,100103227	100102393,100102781,100102960,100103296	0.727273
SK_N_DZ_nuclear_fraction	chr5	85663395	85663429	85663407	+	High_confidence	4	4	16	1.212458	3.875000	chr5	85657593	85663641	LINE|L1|L1PA2	-	chr5	85663231	85664684	AC010595.1|ENST00000507387.1	+	85663231	85664684	0.750000
SK_N_DZ_nuclear_fraction	chr20	50172305	50172339	50172305	-	High_confidence	17	17	48	3.637373	4.894975	chr20	50172108	50172377	LTR|ERVL|LTR33A	-	chr20	50171463	50172320	MSTRG.27112.1	-	50171463	50172320	0.791667
SK_N_DZ_nuclear_fraction	chr15	66502611	66502741	66502611	-	High_confidence	20	20	183	13.867485	5.863051	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.912568
SK_N_DZ_nuclear_fraction	chr14	102083177	102083222	102083177	-	RAMPAGE_only	5	6	20	1.515572	3.070951	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	1.000000
SK_N_DZ_nuclear_fraction	chr6	79631273	79631329	79631302	+	High_confidence	32	32	159	12.048798	5.647601	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.899371
SK_N_DZ_nuclear_fraction	chr11	90167991	90168030	90168000	+	RAMPAGE_only	2	2	11	0.833565	2.921928	chr11	90167016	90168370	LTR|ERV1|LTR12C	+	chr11	90134737	90192611	MSTRG.7714.13	+	90134737,90135558,90147329,90149005,90150481,90152297,90158144,90159238,90162948,90163309,90163534,90168928,90173823,90175971,90177852,90181619,90182915,90191557	90134840,90135670,90147516,90149107,90150607,90152484,90158238,90159337,90163034,90163429,90168295,90168992,90173915,90176062,90178117,90181701,90183008,90192611	0.909091
SK_N_DZ_nuclear_fraction	chr4	140267727	140267763	140267762	+	RAMPAGE_only	24	25	65	4.925609	4.902518	chr4	140267433	140267902	LTR|ERVL|LTR33A_	+	chr4	140255489	140269674	MSTRG.33174.3	+	140255489,140262233,140263157,140269385	140260543,140262365,140263344,140269674	0.830769
SK_N_DZ_nuclear_fraction	chr8	2726956	2726963	2726962	+	High_confidence	51	54	141	10.684783	5.696153	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.758865
SK_N_DZ_nuclear_fraction	chr8	120125636	120125659	120125636	+	High_confidence	8	8	22	1.667129	3.788755	chr8	120125674	120125869	DNA|hAT-Tip100?|MamRep1879	+	chr8	120125143	120277865	COL14A1|ENST00000432943.6	+	120125143,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120277484	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120277865	0.909091
SK_N_DZ_nuclear_fraction	chr16	58862219	58862228	58862227	-	High_confidence	76	84	150	11.366791	5.356253	chr16	58862059	58862421	LTR|ERVL-MaLR|THE1B	-	chr16	58847805	58862214	MSTRG.16296.1	-	58847805,58862134	58848153,58862214	0.573333
SK_N_DZ_nuclear_fraction	chr1	6208681	6208682	6208681	-	High_confidence	20	20	20	1.515572	2.670951	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
SK_N_DZ_nuclear_fraction	chr15	53684583	53684662	53684661	-	High_confidence	30	32	228	17.277522	5.741911	chr15	53684199	53690229	LINE|L1|L1PA3	+	chr15	53665691	53684627	WDR72|ENST00000567575.1	-	53665691,53684145	53665768,53684627	0.732456
SK_N_DZ_nuclear_fraction	chr10	107758206	107758230	107758206	-	RAMPAGE_only	2	2	8	0.606229	2.521641	chr10	107756725	107758431	LINE|L1|L1ME3	+	chr10	107757832	108041194	LINC01435|ENST00000598903.5	-	107757832,107760822,107901008,108040360,108041048	107758068,107760875,107901087,108040498,108041194	0.625000
SK_N_DZ_nuclear_fraction	chr12	100398817	100398853	100398843	+	RAMPAGE_only	6	8	33	2.500694	3.810180	chr12	100398705	100399070	LTR|ERVL-MaLR|THE1B	+	chr12	100357078	100422059	SLC17A8|ENST00000323346.9	+	100357078,100380700,100391000,100393368,100396329,100401776,100402339,100402595,100404037,100412769,100418028,100419814	100357492,100380953,100391119,100393483,100396417,100401863,100402479,100402745,100404170,100412880,100418156,100422059	0.666667
SK_N_DZ_nuclear_fraction	chr1	15236501	15236521	15236515	+	High_confidence	23	28	95	7.198967	5.200776	chr1	15236272	15236744	LTR|ERVL-MaLR|MLT1K	+	chr1	15236506	15397529	MSTRG.444.1	+	15236506,15251770,15272322,15289398,15296683,15301204,15308612,15313056,15316377,15317823,15324451,15327058,15328276,15329345,15341735,15345082,15345415,15349041,15352876,15358109,15360477,15362641,15365826,15367462,15369369,15374501,15375602,15380700,15381230,15382027,15397296	15236761,15251877,15272529,15289666,15296793,15301441,15308736,15313187,15316467,15317928,15324559,15327142,15328429,15329541,15341893,15345190,15345523,15349149,15352984,15358283,15360703,15362726,15365933,15367622,15369502,15374631,15375730,15380796,15381451,15382193,15397529	0.726316
SK_N_DZ_nuclear_fraction	chr9	39809852	39809865	39809864	-	High_confidence	7	7	23	1.742908	3.594466	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803483	39810063	MSTRG.42672.3	-	39803483,39809485	39803859,39810063	0.652174
SK_N_DZ_nuclear_fraction	chr7	105600846	105600878	105600846	-	High_confidence	2	2	12	0.909343	3.027169	chr7	105600681	105601093	LTR|ERVL-MaLR|THE1D	-	chr7	105567101	105600875	EFCAB10|ENST00000490493.1	-	105567101,105569202,105569406,105591304,105600763	105567490,105569290,105569571,105591391,105600875	0.750000
SK_N_DZ_nuclear_fraction	chr4	176189829	176189862	176189829	-	High_confidence	5	5	13	0.985122	3.188722	chr4	176189808	176190268	LTR|ERV1|LTR2	-	chr4	176184672	176190236	MSTRG.33451.3	-	176184672,176188118,176188893	176184892,176188235,176190236	0.923077
SK_N_DZ_nuclear_fraction	chr3	53197287	53197294	53197287	+	RAMPAGE_only	7	14	24	1.818687	4.105389	chr3	53197093	53197442	LTR|ERVL-MaLR|THE1C	+	chr3	53198492	53228189	MSTRG.30110.1	+	53198492,53227951	53198542,53228189	0.625000
SK_N_DZ_nuclear_fraction	chr14	88658686	88658694	88658686	-	RAMPAGE_only	3	3	7	0.530450	2.521641	chr14	88658578	88658802	LINE|L1|L1ME4c	+	chr14	88612430	88662324	MSTRG.12829.6	-	88612430,88616141,88616725,88618227,88618649,88620753,88621112,88622603,88624969,88627645,88634468,88638812,88642892,88644432,88657364,88658186,88661653	88615854,88616242,88616879,88618331,88618812,88620926,88621301,88622718,88627046,88627819,88634489,88638907,88643022,88644511,88657502,88658388,88662324	0.857143
SK_N_DZ_nuclear_fraction	chr17	77390290	77390295	77390290	+	RAMPAGE_only	8	8	16	1.212458	2.750000	chr17	77390212	77390366	SINE|Alu|AluYc	+	chr17	77380122	77402483	SEPT9|ENST00000589140.1	+	77380122,77402058	77380249,77402483	0.687500
SK_N_DZ_nuclear_fraction	chr4	102431247	102431265	102431264	-	High_confidence	4	4	13	0.985122	2.584963	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.769231
SK_N_DZ_nuclear_fraction	chr4	82894945	82894985	82894972	-	RAMPAGE_only	2	2	8	0.606229	2.521641	chr4	82893708	82894962	DNA|TcMar-Mariner|HSMAR2	-	chr4	82893544	82900508	THAP9-AS1|ENST00000504792.6	-	82893544,82899712,82900076,82900333	82895774,82899737,82900223,82900508	0.875000
SK_N_DZ_nuclear_fraction	chr2	15594892	15594909	15594908	+	RAMPAGE_only	5	7	15	1.136679	3.189898	chr2	15594811	15595018	SINE|MIR|MIRb	-	chr2	15591620	15631111	DDX1|NM_004939.2	+	15591620,15595144,15595489,15596733,15597374,15599668,15602547,15603191,15603813,15604436,15605949,15606149,15607174,15613223,15617243,15618180,15620207,15621064,15623435,15627053,15628444,15628637,15628796,15629601,15629989,15630775	15591949,15595196,15595553,15596763,15597471,15599716,15602631,15603275,15603890,15604509,15606026,15606264,15607313,15613284,15617342,15618270,15620396,15621116,15623582,15627145,15628517,15628710,15628839,15629697,15630110,15631111	0.733333
SK_N_DZ_nuclear_fraction	chr10	97744571	97744637	97744636	+	RAMPAGE_only	5	7	31	2.349137	4.542748	chr10	97744435	97744670	LINE|L2|L2a	-	chr10	97738476	97760907	ZFYVE27|NM_001002261.3	+	97738476,97743093,97744728,97748268,97749473,97750330,97751375,97752856,97753037,97757264,97757641,97759235	97738674,97743164,97744915,97748364,97749586,97750470,97751462,97752877,97753182,97757311,97757723,97760907	0.645161
SK_N_DZ_nuclear_fraction	chr5	85663190	85663264	85663255	+	High_confidence	34	40	125	9.472326	6.008041	chr5	85657593	85663641	LINE|L1|L1PA2	-	chr5	85663231	85664684	AC010595.1|ENST00000507387.1	+	85663231	85664684	0.904000
SK_N_DZ_nuclear_fraction	chr12	31119312	31119327	31119322	-	High_confidence	9	9	26	1.970244	3.605389	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.807692
SK_N_DZ_nuclear_fraction	chr7	95837486	95837533	95837502	+	High_confidence	9	9	34	2.576473	3.899040	chr7	95831968	95837992	LINE|L1|L1PA3	-	chr7	95837617	96028321	DYNC1I1|ENST00000519371.1	+	95837617,95869882,95977511,95984814,95987055,95995947,96028174	95837649,95869998,95977601,95984977,95987155,95996073,96028321	0.529412
SK_N_DZ_nuclear_fraction	chr4	4461946	4462002	4461960	-	High_confidence	26	28	74	5.607617	5.787845	chr4	4461848	4462205	LTR|ERVL|LTR79	+	chr4	4425160	4461954	STX18|ENST00000512195.5	-	4425160,4434769,4438393,4457190,4457422,4459371,4461905	4425222,4434858,4438509,4457257,4457500,4459487,4461954	0.743243
SK_N_DZ_nuclear_fraction	chr11	66438593	66438621	66438593	-	High_confidence	4	5	17	1.288236	3.750000	chr11	66438453	66438566	SINE|MIR|MIR	-	chr11	66435837	66438826	MRPL11|ENST00000534488.5	-	66435837,66437103,66437349,66438163,66438631	66436112,66437263,66437435,66438259,66438826	0.588235
SK_N_DZ_nuclear_fraction	chr4	3746067	3746087	3746067	+	High_confidence	3	3	6	0.454672	2.584963	chr4	3745864	3746117	LINE|L1|L1MC4	+	chr4	3746049	3746483	MSTRG.31973.1	+	3746049	3746483	0.666667
SK_N_DZ_nuclear_fraction	chr8	143281653	143281687	143281669	-	High_confidence	37	39	210	15.913507	5.118951	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143281069	143281665	MINCR|ENST00000524335.1	-	143281069,143281481	143281384,143281665	0.704762
SK_N_DZ_nuclear_fraction	chr8	77940887	77940956	77940955	-	High_confidence	34	37	154	11.669905	5.340795	chr8	77940513	77946526	LINE|L1|L1PA2	+	chr8	77933015	77940860	MSTRG.41384.1	-	77933015,77940490	77933041,77940860	0.532468
SK_N_DZ_nuclear_fraction	chr10	5768363	5768381	5768380	-	RAMPAGE_only	2	2	7	0.530450	2.584963	chr10	5768371	5769005	LINE|L1|L1MB3	+	chr10	5765228	5769389	GDI2|ENST00000479928.1	-	5765228,5766240,5768212	5766152,5766638,5769389	0.857143
SK_N_DZ_nuclear_fraction	chr5	32403131	32403163	32403131	-	RAMPAGE_only	2	2	15	1.136679	3.235926	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.933333
SK_N_DZ_nuclear_fraction	chr15	72473671	72473705	72473671	-	RAMPAGE_only	4	4	9	0.682007	2.947703	chr15	72473555	72473674	SINE|MIR|MIRb	+	chr15	72472843	72475168	TMEM202-AS1|ENST00000565181.1	-	72472843	72475168	0.888889
SK_N_DZ_nuclear_fraction	chr3	134485370	134485463	134485387	-	High_confidence	8	8	59	4.470938	5.198245	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.576271
SK_N_DZ_nuclear_fraction	chr4	84299165	84299271	84299165	-	High_confidence	9	11	67	5.077166	5.414574	chr4	84298780	84304810	LINE|L1|L1PA2	+	chr4	83968081	84299169	LOC101928978|NR_125909.1	-	83968081,84012054,84148046,84149218,84243110,84284205,84286668,84293219,84299123	83970110,84012119,84148130,84149256,84243216,84284326,84286827,84293409,84299169	0.626866
SK_N_DZ_nuclear_fraction	chr22	26647077	26647110	26647077	+	High_confidence	12	12	27	2.046022	4.286790	chr22	26647119	26647175	SINE|MIR|MIR1_Amn	+	chr22	26647210	26665737	MIAT|ENST00000440347.5	+	26647210,26656031,26663315,26665530	26647340,26656154,26663398,26665737	0.777778
SK_N_DZ_nuclear_fraction	chr1	22365685	22365686	22365685	-	High_confidence	6	7	8	0.606229	2.750000	chr1	22365640	22366009	LTR|ERVL-MaLR|THE1C	+	chr1	22364629	22366482	AL591122.1|ENST00000624125.1	-	22364629	22366482	0.750000
SK_N_DZ_nuclear_fraction	chr4_GL000008v2_random	170331	170332	170331	-	RAMPAGE_only	7	7	7	0.530450	2.807355	chr4_GL000008v2_random	170280	170685	LTR|ERV1|MER61C	+	chr4_GL000008v2_random	161986	178171	ANKRD20A12P|NR_046228.1	-	161986,163784,164602,175824,177526	162439,163998,164884,175974,178171	0.714286
SK_N_DZ_nuclear_fraction	chr20	18793970	18793987	18793975	-	High_confidence	4	4	10	0.757786	2.725481	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18787970	18793982	LINC00652|NR_026884.1	-	18787970,18789573,18793664	18788898,18789709,18793982	0.500000
SK_N_DZ_nuclear_fraction	chr3	135965817	135965823	135965822	+	High_confidence	5	5	15	1.136679	3.378783	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.933333
SK_N_DZ_nuclear_fraction	chr1	247905583	247905607	247905589	-	High_confidence	4	5	18	1.364015	3.499228	chr1	247905434	247905895	LTR|ERV1|LTR2	-	chr1	247903896	247905359	MSTRG.4147.1	-	247903896	247905359	0.888889
SK_N_DZ_nuclear_fraction	chr2	170751705	170751707	170751706	+	High_confidence	26	34	40	3.031144	4.484255	chr2	170750015	170751707	LINE|L1|L1MEc	+	chr2	170751804	170752788	EIF2S2P4|ENST00000461070.1	+	170751804	170752788	0.925000
SK_N_DZ_nuclear_fraction	chr12	102313277	102313391	102313302	+	RAMPAGE_only	18	19	112	8.487204	6.122081	chr12	102307781	102313768	LINE|L1|L1PA2	-	chr12	102197584	102402596	HELLPAR|ENST00000626826.1	+	102197584	102402596	0.875000
SK_N_DZ_nuclear_fraction	chr6	2990740	2990749	2990748	-	RAMPAGE_only	8	10	24	1.818687	3.234697	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	1.000000
SK_N_DZ_nuclear_fraction	chr11	90240801	90240841	90240840	+	High_confidence	6	6	14	1.060900	3.700440	chr11	90240087	90241455	LINE|L1|L1P1	+	chr11	90240569	90546865	MSTRG.7705.1	+	90240569,90546753	90241441,90546865	0.642857
SK_N_DZ_nuclear_fraction	chr16	58421251	58421273	58421251	+	High_confidence	3	3	9	0.682007	2.641604	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421325	58436169	LINC02137|ENST00000562322.1	+	58421325,58435691	58421385,58436169	0.888889
SK_N_DZ_nuclear_fraction	chr17	59620042	59620044	59620043	+	High_confidence	5	9	13	0.985122	2.792481	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.846154
SK_N_DZ_nuclear_fraction	chr16	2757786	2757802	2757786	+	High_confidence	2	2	10	0.757786	2.921928	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
SK_N_DZ_nuclear_fraction	chr4	41359564	41359607	41359606	+	High_confidence	38	38	56	4.243602	4.048628	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.607143
SK_N_DZ_nuclear_fraction	chr21	33945809	33945810	33945809	-	RAMPAGE_only	169	170	170	12.882363	3.971651	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	0.994118
SK_N_DZ_nuclear_fraction	chr15	48063677	48063724	48063690	+	High_confidence	143	161	850	64.411814	4.965809	chr15	48063502	48063969	LTR|ERVL-MaLR|MLT1C	+	chr15	48063870	48064220	MSTRG.13843.1	+	48063870	48064220	0.922353
SK_N_DZ_nuclear_fraction	chr6	57961635	57961648	57961647	+	High_confidence	14	14	23	1.742908	3.880180	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961437	57973690	AL445250.1|ENST00000641671.1	+	57961437,57962180,57965516,57971594,57972093	57961742,57962248,57965743,57971656,57973690	0.608696
SK_N_DZ_nuclear_fraction	chr5	116075311	116075344	116075313	+	RAMPAGE_only	8	12	28	2.121801	4.000646	chr5	116075193	116075547	LTR|ERVL-MaLR|THE1B	+	chr5	116084975	116293290	COMMD10|NM_016144.3	+	116084975,116087496,116091078,116092544,116134067,116291516,116292450	116085093,116087587,116091189,116092700,116134178,116291576,116293290	0.714286
SK_N_DZ_nuclear_fraction	chr3	130548660	130548674	130548660	+	RAMPAGE_only	26	26	72	5.456060	5.357287	chr3	130548092	130549017	LINE|L1|L1MC4	-	chr3	130560333	130678155	COL6A6|ENST00000358511.10	+	130560333,130563067,130564993,130566701,130568046,130570817,130573955,130581560,130581989,130586505,130589089,130591040,130592540,130592695,130593060,130593198,130594280,130598364,130599756,130606930,130608901,130610648,130621820,130626484,130627318,130634589,130635698,130641651,130642831,130642986,130644990,130649068,130658675,130661636,130665002,130675201	130560428,130563664,130565614,130567262,130568604,130571393,130574525,130581904,130582068,130586660,130589182,130591094,130592612,130592722,130593105,130593252,130594343,130598430,130599810,130606966,130608964,130610711,130621883,130626547,130627369,130634625,130635761,130641714,130642867,130643023,130645002,130649562,130658772,130662308,130665096,130678155	0.736111
SK_N_DZ_nuclear_fraction	chr9	20658312	20658349	20658338	+	High_confidence	44	47	190	14.397935	5.287809	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658351	20694520	MSTRG.42355.2	+	20658351,20694519	20658826,20694520	0.557895
SK_N_DZ_nuclear_fraction	chr4	86453279	86453319	86453279	-	High_confidence	4	5	14	1.060900	3.521641	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86194393	86453278	MAPK10|ENST00000638867.2	-	86194393,86354529,86392313,86399746,86453029	86194407,86354644,86392432,86399806,86453278	0.500000
SK_N_DZ_nuclear_fraction	chr14	28318036	28318083	28318036	+	High_confidence	11	13	39	2.955366	4.754378	chr14	28312502	28318523	LINE|L1|L1PA2	-	chr14	28318140	28418612	AL139023.1|ENST00000548280.1	+	28318140,28405425,28418543	28318532,28405472,28418612	0.692308
SK_N_DZ_nuclear_fraction	chr12	19945700	19945730	19945703	-	High_confidence	24	27	120	9.093433	5.208370	chr12	19945684	19945964	LINE|L2|L2	+	chr12	19941000	19945762	MSTRG.8765.1	-	19941000,19945349,19945618	19941610,19945478,19945762	0.783333
SK_N_DZ_nuclear_fraction	chr1	113758067	113758085	113758084	-	RAMPAGE_only	2	2	7	0.530450	2.584963	chr1	113758040	113758255	SINE|Alu|AluSq2	+	chr1	113697201	113759155	PHTF1|ENST00000393357.6	-	113697201,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113759155	0.714286
SK_N_DZ_nuclear_fraction	chr12	121582278	121582286	121582278	-	High_confidence	33	42	62	4.698273	5.348610	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121429096	121582277	MSTRG.10474.2	-	121429096,121439856,121440815,121441069,121442156,121444011,121444449,121445274,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549459,121574546,121575780,121578801,121581023,121582235	121430469,121440075,121440977,121441233,121443793,121444272,121444536,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548983,121549638,121574593,121575859,121578946,121581134,121582277	0.596774
SK_N_DZ_nuclear_fraction	chr5	124962995	124962997	124962995	+	High_confidence	7	10	15	1.136679	3.323231	chr5	124962834	124963171	LTR|ERV1|MER61A	+	chr5	124963193	124963679	MSTRG.34870.1	+	124963193	124963679	0.866667
SK_N_DZ_nuclear_fraction	chr3	128432205	128432257	128432256	+	RAMPAGE_only	2	2	10	0.757786	3.169925	chr3	128431714	128432547	LINE|L2|L2a	-	chr3	128434337	128434949	MSTRG.30820.1	+	128434337	128434949	0.500000
SK_N_DZ_nuclear_fraction	chr7	82049664	82049697	82049664	-	RAMPAGE_only	2	2	7	0.530450	2.521641	chr7	82049612	82049763	DNA|hAT-Charlie|MER5A1	-	chr7	82012042	82038235	CACNA2D1|ENST00000492734.1	-	82012042,82013460,82014400,82032796,82038076	82012243,82013510,82014479,82032901,82038235	0.571429
SK_N_DZ_nuclear_fraction	chr2	117623895	117623927	117623926	-	High_confidence	3	3	9	0.682007	2.947703	chr2	117623253	117629278	LINE|L1|L1PA3	+	chr2	117612206	117623730	MSTRG.24577.1	-	117612206,117623234	117612306,117623730	0.666667
SK_N_DZ_nuclear_fraction	chr12	39369820	39369885	39369884	-	RAMPAGE_only	2	2	13	0.985122	3.022055	chr12	39369860	39369969	LINE|Penelope|Penelope1_Vert	+	chr12	39293228	39442943	KIF21A|ENST00000636569.1	-	39293228,39301479,39302964,39304820,39307564,39309585,39311416,39315228,39315931,39318072,39319905,39322667,39325838,39326263,39330241,39330745,39331689,39332213,39332590,39332892,39333211,39337095,39340164,39340905,39341504,39342033,39351776,39356831,39357247,39358177,39363097,39366349,39367029,39367882,39369728,39370038,39442926	39294517,39301679,39303135,39304938,39307729,39309766,39311553,39315243,39315970,39318201,39320013,39322882,39325893,39326324,39330262,39330911,39331791,39332408,39332744,39333107,39333280,39337203,39340364,39341094,39341622,39342124,39351980,39356895,39357437,39358373,39363213,39366517,39367164,39368032,39369911,39370261,39442943	0.538462
SK_N_DZ_nuclear_fraction	chr7	29970323	29970359	29970358	-	High_confidence	3	3	9	0.682007	2.503258	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	0.555556
SK_N_DZ_nuclear_fraction	chr2	25653188	25653199	25653188	-	High_confidence	3	6	16	1.212458	3.189898	chr2	25653137	25653432	LTR|ERVL-MaLR|THE1A	+	chr2	25596123	25653180	DTNB|ENST00000303659.8	-	25596123,25607235,25628170,25639013,25652593,25652924	25596240,25607321,25628384,25639094,25652661,25653180	0.750000
SK_N_DZ_nuclear_fraction	chr3	9854446	9854462	9854446	+	RAMPAGE_only	5	6	17	1.288236	3.734522	chr3	9853634	9854552	LTR|ERVK|LTR5_Hs	-	chr3	9819302	9855138	TTLL3|ENST00000455274.5	+	9819302,9825799,9826996,9828959,9854558	9820741,9825948,9827240,9829395,9855138	0.823529
SK_N_DZ_nuclear_fraction	chr21	38121394	38121402	38121401	-	High_confidence	5	7	10	0.757786	2.725481	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38054010	38121360	DSCR4|ENST00000328264.7	-	38054010,38120306,38121127	38054773,38120408,38121360	0.500000
SK_N_DZ_nuclear_fraction	chr2	15606814	15606871	15606841	+	RAMPAGE_only	7	7	24	1.818687	3.931838	chr2	15606819	15606983	SINE|Alu|AluJr	-	chr2	15599152	15631109	DDX1|ENST00000621973.1	+	15599152,15599668,15602547,15603191,15603813,15604436,15605949,15606149,15607174,15613223,15617243,15618180,15620207,15621064,15623435,15627053,15628444,15628637,15628796,15629601,15629989,15630775	15599168,15599716,15602631,15603275,15603890,15604509,15606026,15606264,15607313,15613284,15617342,15618270,15620396,15621116,15623582,15627145,15628517,15628710,15628839,15629697,15630110,15631109	0.750000
SK_N_DZ_nuclear_fraction	chr5	27472283	27472304	27472283	+	High_confidence	439	476	1136	86.084495	6.950213	chr5	27472073	27472487	LTR|ERV1|MER61C	+	chr5	27472278	27492233	MSTRG.33826.2	+	27472278,27475534,27477638,27484925	27472519,27476158,27477801,27492233	0.611796
SK_N_DZ_nuclear_fraction	chr11	64226142	64226212	64226142	-	High_confidence	52	52	374	28.341198	6.931687	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223841	64226141	MSTRG.7059.9	-	64223841,64224099,64224284,64224542,64224800,64225785,64226049	64223967,64224210,64224341,64224717,64225580,64225869,64226141	0.909091
SK_N_DZ_nuclear_fraction	chr13	89279409	89279520	89279440	-	High_confidence	14	14	85	6.441181	5.224700	chr13	89279203	89279690	LTR|ERVL|LTR53B	+	chr13	89278489	89278846	MSTRG.11401.1	-	89278489	89278846	0.564706
SK_N_DZ_nuclear_fraction	chr7	134432378	134432445	134432378	-	High_confidence	43	49	172	13.033920	5.972739	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.610465
SK_N_DZ_nuclear_fraction	chr12	51418034	51418061	51418034	+	RAMPAGE_only	6	6	13	0.985122	2.918296	chr12	51418065	51418366	LINE|CR1|L3	+	chr12	51440707	51497862	SLC4A8|ENST00000551071.5	+	51440707,51450641,51452123,51453538,51457350,51458558,51459950,51461203,51462309,51463613,51469613,51470391,51471286,51474341,51475044,51485786,51488698,51489699,51493703,51494944,51496986	51440789,51451022,51452259,51453699,51457539,51458650,51460108,51461291,51462456,51463714,51469788,51470525,51471532,51474447,51475206,51485900,51488860,51489951,51493772,51495118,51497862	0.692308
SK_N_DZ_nuclear_fraction	chr3	129365473	129365474	129365473	-	High_confidence	43	43	43	3.258480	4.582901	chr3	129365318	129365670	LTR|ERVL-MaLR|THE1A	-	chr3	129361356	129365454	MSTRG.30883.1	-	129361356	129365454	1.000000
SK_N_DZ_nuclear_fraction	chr3	9854318	9854382	9854381	-	High_confidence	24	29	147	11.139455	6.169321	chr3	9853634	9854552	LTR|ERVK|LTR5_Hs	-	chr3	9847750	9854401	MSTRG.29243.1	-	9847750,9854267	9853603,9854401	0.816327
SK_N_DZ_nuclear_fraction	chr1	247905282	247905344	247905331	-	High_confidence	11	11	50	3.788930	4.897055	chr1	247905067	247905434	LTR|ERV1|HERVE_a-int	-	chr1	247903896	247905359	MSTRG.4147.1	-	247903896	247905359	0.800000
SK_N_DZ_nuclear_fraction	chr7	93591277	93591394	93591277	+	High_confidence	159	165	1394	105.635374	6.412841	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591291	93811382	MSTRG.39389.1	+	93591291,93807203	93591771,93811382	0.639885
SK_N_DZ_nuclear_fraction	chr12	113773650	113773686	113773650	-	High_confidence	46	55	135	10.230112	6.019588	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113745703	113773663	LINC01234|ENST00000550223.5	-	113745703,113767074,113773614	113746595,113767208,113773663	0.555556
SK_N_DZ_nuclear_fraction	chr11	93734841	93734872	93734860	-	High_confidence	3	3	9	0.682007	2.500000	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730282	93734661	TAF1D|ENST00000525928.5	-	93730282,93730676,93731149,93731752,93732243,93733086,93733349	93730447,93730712,93731216,93731799,93732291,93733121,93734661	0.888889
SK_N_DZ_nuclear_fraction	chr7	15547794	15547820	15547819	-	RAMPAGE_only	4	4	14	1.060900	3.392747	chr7	15547309	15553333	LINE|L1|L1PA2	+	chr7	15200317	15562015	AGMO|NM_001004320.1	-	15200317,15365513,15366139,15385445,15387405,15390670,15390839,15394112,15418557,15431004,15544771,15560140,15561719	15201359,15365619,15366222,15385562,15387540,15390750,15390905,15394179,15418653,15431108,15544923,15560271,15562015	0.500000
SK_N_DZ_nuclear_fraction	chr12	78955563	78955564	78955563	+	RAMPAGE_only	9	9	9	0.682007	2.641604	chr12	78955385	78955684	LTR|ERVL-MaLR|MLT1A0	-	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.555556
SK_N_DZ_nuclear_fraction	chr18	32637994	32637997	32637994	+	RAMPAGE_only	32	33	63	4.774052	5.045091	chr18	32637813	32638169	LTR|ERVL-MaLR|THE1B	+	chr18	32470287	32745567	AC025887.2|ENST00000646805.1	+	32470287,32517823,32560634,32561412,32737350,32740789,32742851	32470338,32518131,32560964,32561539,32738693,32740926,32745567	0.539683
SK_N_DZ_nuclear_fraction	chr18	80147918	80147922	80147921	+	High_confidence	3	3	8	0.606229	2.807355	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.500000
SK_N_DZ_nuclear_fraction	chr6	3195772	3195779	3195772	-	High_confidence	227	231	504	38.192417	6.847323	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.795635
SK_N_DZ_nuclear_fraction	chr21	38121491	38121539	38121491	+	High_confidence	264	272	592	44.860934	6.704986	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.778716
SK_N_DZ_nuclear_fraction	chr14	102235448	102235472	102235458	-	High_confidence	3	3	11	0.833565	3.121928	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.636364
SK_N_DZ_nuclear_fraction	chr15	48796010	48796061	48796010	-	RAMPAGE_only	2	2	13	0.985122	2.918296	chr15	48795639	48795973	LINE|L1|L1MC5	-	chr15	48783982	48789322	CEP152|ENST00000558337.1	-	48783982,48788800,48789237	48784120,48789001,48789322	0.846154
SK_N_DZ_nuclear_fraction	chr2	15594937	15594977	15594976	+	RAMPAGE_only	4	5	16	1.212458	3.750000	chr2	15594811	15595018	SINE|MIR|MIRb	-	chr2	15591620	15631111	DDX1|NM_004939.2	+	15591620,15595144,15595489,15596733,15597374,15599668,15602547,15603191,15603813,15604436,15605949,15606149,15607174,15613223,15617243,15618180,15620207,15621064,15623435,15627053,15628444,15628637,15628796,15629601,15629989,15630775	15591949,15595196,15595553,15596763,15597471,15599716,15602631,15603275,15603890,15604509,15606026,15606264,15607313,15613284,15617342,15618270,15620396,15621116,15623582,15627145,15628517,15628710,15628839,15629697,15630110,15631111	0.500000
SK_N_DZ_nuclear_fraction	chr8	17910367	17910378	17910377	-	High_confidence	25	25	49	3.713152	4.797995	chr8	17908095	17912373	LTR|ERVK|HERVK-int	-	chr8	17864379	17910365	FGL1|ENST00000398056.6	-	17864379,17868547,17868915,17874018,17874361,17881998,17885491,17895446,17896169,17909884	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17895517,17896416,17910365	0.632653
SK_N_DZ_nuclear_fraction	chr1	112762631	112762659	112762648	+	High_confidence	22	22	103	7.805196	5.565297	chr1	112762625	112762805	SINE|MIR|MIRb	+	chr1	112762625	112798171	MSTRG.2198.1	+	112762625,112797591	112762746,112798171	0.611650
SK_N_DZ_nuclear_fraction	chr12	51418140	51418158	51418144	+	RAMPAGE_only	91	112	347	26.295176	6.888030	chr12	51418065	51418366	LINE|CR1|L3	+	chr12	51424770	51515763	SLC4A8|ENST00000453097.6	+	51424770,51440707,51450875,51452123,51453538,51457350,51458558,51459950,51461203,51462309,51463613,51469613,51470391,51471286,51474341,51475044,51485786,51488698,51489699,51493703,51494944,51496986,51504028,51505834,51507425	51425035,51440789,51451022,51452259,51453699,51457539,51458650,51460108,51461291,51462456,51463714,51469788,51470525,51471532,51474447,51475206,51485900,51488860,51489951,51493772,51495118,51497124,51504120,51505930,51515763	0.504323
SK_N_DZ_nuclear_fraction	chr19	44914273	44914322	44914321	+	High_confidence	7	7	20	1.515572	3.431624	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.950000
SK_N_DZ_nuclear_fraction	chr14	81170402	81170420	81170419	-	High_confidence	15	15	51	3.864709	4.841748	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.784314
SK_N_DZ_nuclear_fraction	chr12	795519	795530	795519	+	RAMPAGE_only	7	7	20	1.515572	4.021928	chr12	795326	795676	LTR|ERVL-MaLR|THE1B	+	chr12	753055	911451	MSTRG.8320.6	+	753055,813641,827041,830002,857160,859244,861012,862082,871264,878214,880720,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846	754324,813814,827262,830160,857249,859464,861343,862270,871348,878361,880999,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,911451	0.600000
SK_N_DZ_nuclear_fraction	chr9	127451153	127451201	127451200	-	High_confidence	4	4	9	0.682007	2.725481	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	1.000000
SK_N_DZ_nuclear_fraction	chr5	147382877	147382900	147382888	+	High_confidence	13	18	53	4.016266	4.429921	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.830189
SK_N_DZ_nuclear_fraction	chr1	156367865	156367913	156367878	-	High_confidence	126	207	549	41.602454	6.696683	chr1	156367719	156368094	LINE|L2|L2c	+	chr1	156320839	156367873	CCT3|ENST00000446905.5	-	156320839,156324971,156333546,156335826,156367743	156321025,156325089,156333643,156335888,156367873	0.850638
SK_N_DZ_nuclear_fraction	chr3	9391827	9391828	9391827	-	RAMPAGE_only	16	18	23	1.742908	3.363287	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9389698	9397504	MSTRG.29213.30	-	9389698,9390279,9395505,9397423	9389796,9391826,9395579,9397504	0.869565
SK_N_DZ_nuclear_fraction	chr1	153967482	153967512	153967486	+	High_confidence	30	36	144	10.912119	5.567005	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.597222
SK_N_DZ_nuclear_fraction	chrX	73841815	73841853	73841827	-	High_confidence	3	3	21	1.591351	3.321104	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.761905
SK_N_DZ_nuclear_fraction	chrX	73825034	73825115	73825095	-	RAMPAGE_only	11	11	37	2.803808	4.378864	chrX	73825002	73825055	SINE|MIR|MIRc	-	chrX	73823336	73829691	XIST|ENST00000649757.1	-	73823336,73829067	73827984,73829691	0.945946
SK_N_DZ_nuclear_fraction	chr7	106285348	106285384	106285383	+	High_confidence	5	5	23	1.742908	3.879664	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106285479	106286326	AC007032.1|ENST00000609281.1	+	106285479	106286326	0.913043
SK_N_DZ_nuclear_fraction	chr11	93733796	93733806	93733796	-	High_confidence	5	5	18	1.364015	3.614369	chr11	93733698	93733829	SINE|Alu|AluJo	-	chr11	93731160	93733597	MSTRG.7783.15	-	93731160,93731752,93732243,93733349	93731216,93731799,93733121,93733597	0.666667
SK_N_DZ_nuclear_fraction	chr11	94238025	94238100	94238025	-	High_confidence	3	4	20	1.515572	3.826875	chr11	94232524	94238528	LINE|L1|L1PA2	-	chr11	94237285	94237740	MSTRG.7748.1	-	94237285	94237740	0.800000
SK_N_DZ_nuclear_fraction	chr22	50330653	50330680	50330679	+	RAMPAGE_only	6	6	17	1.288236	3.169249	chr22	50330424	50330745	SINE|Alu|AluY	+	chr22	50343303	50445090	PPP6R2|ENST00000359139.7	+	50343303,50372019,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439697,50439960,50440821,50443865,50444202	50343550,50372150,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50445090	0.529412
SK_N_DZ_nuclear_fraction	chr17	47067487	47067534	47067498	-	High_confidence	280	300	1050	79.567535	6.306795	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.858095
SK_N_DZ_nuclear_fraction	chr18	74723568	74723585	74723575	+	RAMPAGE_only	7	8	15	1.136679	3.807355	chr18	74722860	74723923	LINE|L1|L1MEf	-	chr18	74631019	75065669	ZNF407|ENST00000299687.9	+	74631019,74641007,74781427,74877196,74881035,74889917,74920513,75063149	74635706,74641122,74781502,74877363,74881119,74890038,74920692,75065669	0.733333
SK_N_DZ_nuclear_fraction	chr3	9363405	9363420	9363405	+	High_confidence	12	12	26	1.970244	3.403074	chr3	9363443	9363535	LINE|L2|L2b	+	chr3	9363097	9384870	THUMPD3|ENST00000515662.6	+	9363097,9365015,9366907,9371059,9374515,9377818,9380502,9383198,9384211,9384523	9363728,9365320,9366985,9371536,9374646,9377888,9380618,9383309,9384335,9384870	0.884615
SK_N_DZ_nuclear_fraction	chr5	138557169	138557215	138557214	-	High_confidence	3	5	13	0.985122	2.873141	chr5	138557194	138557264	SINE|Alu|AluSx3	-	chr5	138555826	138557891	HSPA9|ENST00000524109.1	-	138555826,138556451,138556773,138557868	138556114,138556592,138557496,138557891	1.000000
SK_N_DZ_nuclear_fraction	chr3	183116004	183116009	183116008	-	High_confidence	4	4	9	0.682007	2.947703	chr3	183115868	183116225	LTR|ERV1|MER51E	-	chr3	183015217	183116075	MCCC1|ENST00000492597.5	-	183015217,183017265,183020129,183022416,183025754,183033990,183037217,183039025,183041566,183045412,183052158,183057310,183070998,183071209,183072365,183086692,183094558,183115473	183015566,183017337,183020237,183022554,183025804,183034077,183037434,183039135,183041750,183045540,183052240,183057422,183071120,183071357,183072487,183086788,183094605,183116075	0.888889
SK_N_DZ_nuclear_fraction	chr17	50834583	50834619	50834601	+	High_confidence	4	4	12	0.909343	2.855389	chr17	50834613	50834722	SINE|MIR|MIRb	+	chr17	50834799	50842340	MSTRG.18637.2	+	50834799	50842340	0.916667
SK_N_DZ_nuclear_fraction	chrX	73837439	73837474	73837466	-	RAMPAGE_only	4	6	29	2.197580	2.922680	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.931034
SK_N_DZ_nuclear_fraction	chr9	129488817	129488857	129488856	+	High_confidence	10	11	29	2.197580	2.991120	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.965517
SK_N_DZ_nuclear_fraction	chr7	42960878	42960918	42960894	-	RAMPAGE_only	8	10	36	2.728030	4.422001	chr7	42960777	42961015	LTR|ERV1|HERV35I-int	-	chr7	42954134	42963343	AC005537.1|ENST00000588324.1	-	42954134,42955376,42955954,42959928,42961338,42962967	42954485,42955457,42956132,42959990,42961528,42963343	0.527778
SK_N_DZ_nuclear_fraction	chr14	88831392	88831393	88831392	+	RAMPAGE_only	120	120	123	9.320768	5.556972	chr14	88831031	88831570	LTR|ERV1|MER66C	+	chr14	88824738	88877956	TTC8|ENST00000554686.5	+	88824738,88839451,88840864,88841036,88843805,88852970,88857189,88861221,88870058,88871548,88872329,88877293	88824821,88839572,88840928,88841196,88843850,88853056,88857277,88861332,88870198,88871723,88872452,88877956	0.715447
SK_N_DZ_nuclear_fraction	chr7	101308269	101308325	101308324	+	High_confidence	24	26	116	8.790318	5.938987	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.706897
SK_N_DZ_nuclear_fraction	chr7	137254922	137254941	137254940	-	RAMPAGE_only	4	4	8	0.606229	2.500000	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	1.000000
SK_N_DZ_nuclear_fraction	chr6	20686423	20686427	20686423	+	RAMPAGE_only	2	2	6	0.454672	2.584963	chr6	20686221	20686704	DNA|hAT-Charlie|MER1A	+	chr6	20546340	21232404	CDKAL1|ENST00000378610.1	+	20546340,20548592,20649292,20739518,20758594,20781144,20846074,20955418,21000226,21065047,21108400,21198020,21201109,21230847	20546523,20548705,20649377,20739615,20758643,20781265,20846178,20955585,21000372,21065228,21108463,21198104,21201274,21232404	1.000000
SK_N_DZ_nuclear_fraction	chr1	247905543	247905544	247905543	-	High_confidence	61	61	78	5.910731	5.753226	chr1	247905434	247905895	LTR|ERV1|LTR2	-	chr1	247903896	247905359	MSTRG.4147.1	-	247903896	247905359	0.846154
SK_N_DZ_nuclear_fraction	chrX	15462957	15462967	15462966	-	RAMPAGE_only	4	4	10	0.757786	2.921928	chrX	15462843	15462976	LINE|L2|L2a	-	chrX	15384798	15493341	PIR|ENST00000380420.9	-	15384798,15390184,15397448,15407505,15425905,15455847,15459656,15479728,15491161,15493189	15385116,15390251,15397531,15407550,15425990,15456054,15459740,15479821,15491309,15493341	0.500000
SK_N_DZ_nuclear_fraction	chrX	16712869	16712959	16712889	-	High_confidence	21	21	92	6.971632	5.827485	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.945652
SK_N_DZ_nuclear_fraction	chr8	143039246	143039267	143039256	+	High_confidence	11	11	36	2.728030	4.704511	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053938	MSTRG.42002.2	+	143039260,143044648,143047678,143049208,143053225	143043262,143044817,143047814,143049298,143053938	1.000000
SK_N_DZ_nuclear_fraction	chr17	58325220	58325221	58325220	-	RAMPAGE_only	40	40	43	3.258480	4.243943	chr17	58325202	58325271	SINE|MIR|MIRb	-	chr17	58302270	58328084	TSPOAP1|ENST00000343736.8	-	58302270,58304337,58305060,58305386,58305539,58305832,58306341,58306799,58307610,58307841,58308540,58309966,58310511,58310835,58311570,58311891,58316022,58316424,58318279,58319089,58320108,58320530,58322307,58322653,58322949,58323297,58323467,58324810,58325533,58326292,58326682,58327587	58302447,58304399,58305171,58305458,58305643,58305865,58306413,58306968,58307762,58307941,58309380,58310158,58310751,58311213,58311722,58312722,58316132,58316540,58318452,58319294,58320129,58320581,58322412,58322776,58323039,58323381,58323545,58325002,58325713,58326421,58326790,58328084	0.720930
SK_N_DZ_nuclear_fraction	chr11	90240632	90240695	90240694	+	High_confidence	72	123	514	38.950203	6.860629	chr11	90240087	90241455	LINE|L1|L1P1	+	chr11	90240569	90546865	MSTRG.7705.1	+	90240569,90546753	90241441,90546865	0.803502
SK_N_DZ_nuclear_fraction	chr15	22758428	22758465	22758464	+	High_confidence	4	4	14	1.060900	3.026987	chr15	22758208	22758505	SINE|Alu|AluYm1	+	chr15	22757856	22778737	LOC283683|NR_040057.1	+	22757856,22758818,22764223,22774215,22777766	22757994,22758921,22764358,22774313,22778737	0.642857
SK_N_DZ_nuclear_fraction	chr3	139344535	139344548	139344547	+	High_confidence	89	89	275	20.839116	5.690295	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.778182
SK_N_DZ_nuclear_fraction	chr15	51603698	51603702	51603701	-	RAMPAGE_only	45	46	79	5.986510	5.914478	chr15	51603584	51603891	SINE|Alu|AluY	+	chr15	51447787	51622635	DMXL2|ENST00000543779.6	-	51447787,51450128,51451644,51453549,51455150,51456065,51456308,51457327,51458505,51458708,51463378,51464674,51465565,51466183,51471222,51474343,51476588,51478270,51479947,51480541,51486072,51487953,51488547,51491577,51495023,51498551,51502805,51507133,51514441,51517077,51535662,51536165,51537487,51538212,51542332,51545582,51547229,51563380,51564124,51565087,51568486,51576055,51622458	51449193,51450346,51451697,51453641,51455228,51456193,51456369,51457466,51458627,51458795,51463496,51464876,51465651,51466311,51471401,51474592,51476719,51478347,51480139,51481623,51486337,51488119,51488645,51491747,51495134,51500231,51503033,51507253,51514559,51517167,51535784,51536862,51537759,51538452,51542507,51545766,51547408,51563447,51564260,51565166,51568558,51576181,51622635	0.582278
SK_N_DZ_nuclear_fraction	chr7	101217558	101217588	101217558	-	High_confidence	3	3	16	1.212458	3.375000	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101212543	101217593	MSTRG.39589.11	-	101212543,101212841,101213106,101215907,101216162,101216409,101216694,101217165	101212655,101212943,101213204,101216020,101216326,101216546,101216786,101217593	1.000000
SK_N_DZ_nuclear_fraction	chr8	2727044	2727045	2727044	+	High_confidence	5	7	8	0.606229	2.521641	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.750000
SK_N_DZ_nuclear_fraction	chr5	33441368	33441415	33441368	+	High_confidence	10	11	63	4.774052	5.477125	chr5	33441307	33441471	SINE|MIR|MIR3	-	chr5	33441380	33448730	TARS|ENST00000506040.1	+	33441380,33445323,33448540	33441864,33445404,33448730	0.587302
SK_N_DZ_nuclear_fraction	chr10	65570509	65570536	65570521	+	High_confidence	133	264	883	66.912508	6.985728	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570874	65615757	LINC01515|ENST00000593568.1	+	65570874,65572934,65585484,65615635	65571579,65573056,65585567,65615757	0.611552
SK_N_DZ_nuclear_fraction	chr8	74350017	74350033	74350017	-	High_confidence	7	7	18	1.364015	3.836592	chr8	74349865	74349977	LINE|L1|L1MC4	-	chr8	74347633	74350315	MSTRG.41351.1	-	74347633	74350315	1.000000
SK_N_DZ_nuclear_fraction	chr22	50756835	50756862	50756835	+	High_confidence	6	6	20	1.515572	3.932138	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.650000
SK_N_DZ_nuclear_fraction	chr4	6673446	6673447	6673446	+	High_confidence	266	266	274	20.763338	5.579615	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	0.970803
SK_N_DZ_nuclear_fraction	chr9	39809997	39810034	39810033	-	High_confidence	48	48	157	11.897241	5.669579	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803483	39810063	MSTRG.42672.3	-	39803483,39809485	39803859,39810063	0.904459
SK_N_DZ_nuclear_fraction	chr17	59619888	59619923	59619894	+	High_confidence	129	152	570	43.193804	6.252678	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.808772
SK_N_DZ_nuclear_fraction	chr4	185127142	185127160	185127142	+	High_confidence	9	9	28	2.121801	3.856196	chr4	185126943	185127298	LINE|L1|L1PA17	-	chr4	185127157	185133086	MSTRG.33530.1	+	185127157	185133086	0.892857
SK_N_DZ_nuclear_fraction	chr17	28719711	28719715	28719711	+	High_confidence	4	4	8	0.606229	2.521641	chr17	28719632	28719760	SINE|Alu|AluYh3	+	chr17	28719981	28724356	RPL23A|NM_000984.5	+	28719981,28720706,28722722,28723570,28723866	28720030,28720890,28722899,28723640,28724356	0.500000
SK_N_DZ_nuclear_fraction	chr14	88627765	88627805	88627765	-	High_confidence	6	7	22	1.667129	3.361294	chr14	88627710	88627772	DNA|hAT-Ac|OldhAT1	-	chr14	88621209	88626941	EML5|ENST00000553320.5	-	88621209,88624969,88626837	88621301,88625127,88626941	0.545455
SK_N_DZ_nuclear_fraction	chr9	120471811	120471834	120471833	-	RAMPAGE_only	3	3	8	0.606229	2.750000	chr9	120471770	120471851	LINE|L2|L2	+	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.625000
SK_N_DZ_nuclear_fraction	chr14	46063946	46063965	46063960	-	High_confidence	17	19	43	3.258480	4.009157	chr14	46063782	46064404	LTR|ERV1|LTR9	-	chr14	46061666	46063956	MSTRG.12130.1	-	46061666,46063767	46061950,46063956	0.697674
SK_N_DZ_nuclear_fraction	chr14	100929920	100929921	100929920	+	RAMPAGE_only	79	90	91	6.895853	5.786189	chr14	100929864	100929989	LINE|L1|L1ME5	+	chr14	100894816	100931016	MSTRG.13029.53	+	100894816,100897592,100898956,100906097,100906935,100910232,100913431,100928098	100895039,100897732,100899085,100906163,100907132,100910304,100913521,100931016	0.912088
SK_N_DZ_nuclear_fraction	chr7	18395180	18395181	18395180	+	RAMPAGE_only	8	8	8	0.606229	2.750000	chr7	18395143	18395371	SINE|MIR|MIRc	+	chr7	18495709	18668843	HDAC9|NM_014707.3	+	18495709,18496261,18585280,18590344,18591515,18593907,18629349,18634626,18644670,18647784,18648465,18666212	18495854,18496324,18585522,18590486,18591642,18594029,18629481,18634742,18644793,18647998,18648683,18668843	0.875000
SK_N_DZ_nuclear_fraction	chr5	140655959	140655989	140655988	+	RAMPAGE_only	8	8	15	1.136679	2.682589	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	1.000000
SK_N_DZ_nuclear_fraction	chr4	152412488	152412498	152412488	-	High_confidence	5	6	9	0.682007	2.500000	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.888889
SK_N_DZ_nuclear_fraction	chr12	6493747	6493748	6493747	-	High_confidence	7	8	8	0.606229	2.807355	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6492151	6493718	MRPL51|ENST00000543959.5	-	6492151,6492861,6493673	6492467,6492972,6493718	0.625000
SK_N_DZ_nuclear_fraction	chr11	10304146	10304171	10304163	-	High_confidence	3	5	17	1.288236	3.577820	chr11	10304024	10304235	SINE|MIR|MIRc	+	chr11	10301578	10304632	MSTRG.6337.3	-	10301578,10304478	10304204,10304632	0.823529
SK_N_DZ_nuclear_fraction	chr9	125407733	125407734	125407733	+	High_confidence	6	6	8	0.606229	2.521641	chr9	125407725	125407879	SINE|MIR|MIRb	+	chr9	125407886	125408622	MSTRG.43626.1	+	125407886	125408622	0.625000
SK_N_DZ_nuclear_fraction	chr7	15547679	15547703	15547689	-	RAMPAGE_only	20	23	55	4.167823	4.671913	chr7	15547309	15553333	LINE|L1|L1PA2	+	chr7	15200317	15562015	AGMO|NM_001004320.1	-	15200317,15365513,15366139,15385445,15387405,15390670,15390839,15394112,15418557,15431004,15544771,15560140,15561719	15201359,15365619,15366222,15385562,15387540,15390750,15390905,15394179,15418653,15431108,15544923,15560271,15562015	0.545455
SK_N_DZ_nuclear_fraction	chr2	11681424	11681437	11681436	+	High_confidence	78	87	149	11.291012	6.380111	chr2	11681255	11681626	LTR|ERVL-MaLR|MSTA	+	chr2	11681459	11683323	MSTRG.23012.1	+	11681459	11683323	0.711409
SK_N_DZ_nuclear_fraction	chr11	123061270	123061309	123061270	-	High_confidence	2	2	15	1.136679	3.378783	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.933333
SK_N_DZ_nuclear_fraction	chr4	174047599	174047602	174047599	+	High_confidence	563	682	1011	76.612169	5.892420	chr4	174047373	174047819	LTR|ERVL-MaLR|MLT1B	+	chr4	174047620	174048381	MSTRG.33418.1	+	174047620	174048381	0.986152
SK_N_DZ_nuclear_fraction	chr3	9391423	9391492	9391437	-	RAMPAGE_only	4	4	24	1.818687	3.621176	chr3	9391256	9391557	SINE|Alu|AluSz	-	chr3	9389698	9397504	MSTRG.29213.30	-	9389698,9390279,9395505,9397423	9389796,9391826,9395579,9397504	0.958333
SK_N_DZ_nuclear_fraction	chr1	168354221	168354240	168354239	+	High_confidence	5	7	16	1.212458	3.373557	chr1	168348862	168354879	LINE|L1|L1PA2	-	chr1	168354375	168582077	MSTRG.3039.1	+	168354375,168379608,168559605,168580062,168581051	168354910,168379782,168576698,168580177,168582077	0.875000
SK_N_DZ_nuclear_fraction	chr21	8864003	8864076	8864075	+	RAMPAGE_only	5	5	34	2.576473	4.616875	chr21	8864120	8864411	SINE|Alu|AluY	+	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	0.970588
SK_N_DZ_nuclear_fraction	chr12	92364811	92364833	92364831	-	High_confidence	6	9	16	1.212458	3.625000	chr12	92364804	92364909	DNA|hAT-Charlie|MER5B	-	chr12	92247755	92363832	LINC02391|ENST00000615716.1	-	92247755,92268920,92272535,92357530,92363590	92248029,92268979,92272616,92357674,92363832	0.562500
SK_N_DZ_nuclear_fraction	chr17	4143196	4143244	4143199	+	High_confidence	166	166	432	32.736357	5.551581	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.972222
SK_N_DZ_nuclear_fraction	chr18	7946878	7946898	7946878	+	High_confidence	16	16	45	3.410037	4.588982	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.688889
SK_N_DZ_nuclear_fraction	chr10	84279967	84279968	84279967	+	High_confidence	40	43	51	3.864709	4.699687	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279990	84288995	LINC00858|ENST00000437892.1	+	84279990,84288223,84288593	84280065,84288420,84288995	0.725490
SK_N_DZ_nuclear_fraction	chr6	145735998	145736034	145736022	-	High_confidence	15	24	61	4.622495	4.769577	chr6	145735975	145736071	SINE|MIR|MIR3	+	chr6	145625303	145735855	EPM2A|NM_005670.3	-	145625303,145635244,145686121,145735197	145627693,145635486,145686296,145735855	0.819672
SK_N_DZ_nuclear_fraction	chr22	50756926	50756950	50756939	+	High_confidence	13	15	35	2.652251	4.500712	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.571429
SK_N_DZ_nuclear_fraction	chr18	12419888	12419955	12419903	+	High_confidence	38	54	188	14.246378	6.623341	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12419891	12427322	PRELID3A|ENST00000589952.5	+	12419891,12420324,12421539,12427040,12427220	12419947,12420493,12421629,12427111,12427322	0.542553
SK_N_DZ_nuclear_fraction	chr19	5680234	5680259	5680234	-	High_confidence	4	4	14	1.060900	3.392747	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.857143
SK_N_DZ_nuclear_fraction	chr17	5619421	5619424	5619423	-	RAMPAGE_only	10	15	18	1.364015	3.725481	chr17	5619250	5619612	LTR|ERVL-MaLR|THE1C	-	chr17	5501384	5584531	NLRP1|ENST00000262467.9	-	5501384,5517745,5520880,5521523,5530480,5532821,5533291,5533896,5536850,5539414,5541856,5553385,5558338,5581858,5582669,5583686	5501872,5517887,5521012,5521786,5530704,5532984,5533384,5533988,5536940,5539585,5542027,5553556,5560043,5582062,5582846,5584531	0.500000
SK_N_DZ_nuclear_fraction	chr19	17336685	17336727	17336685	+	High_confidence	44	44	73	5.531838	4.954289	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.821918
SK_N_DZ_nuclear_fraction	chr9	62376800	62376801	62376800	-	High_confidence	7	7	9	0.682007	2.725481	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	1.000000
SK_N_DZ_nuclear_fraction	chr7	141737957	141737962	141737961	-	High_confidence	5	6	10	0.757786	2.521928	chr7	141737808	141738038	SINE|Alu|AluJb	-	chr7	141723901	141737775	WEE2-AS1|ENST00000486906.1	-	141723901,141727991,141737382	141724024,141728145,141737775	0.800000
SK_N_DZ_nuclear_fraction	chr10	107640957	107641011	107640981	-	RAMPAGE_only	4	4	28	2.121801	4.324863	chr10	107640547	107640959	LTR|ERVL-MaLR|MLT1B	-	chr10	107625748	107648905	MSTRG.5673.7	-	107625748,107639984	107638362,107648905	0.964286
SK_N_DZ_nuclear_fraction	chr16	75434086	75434141	75434086	+	High_confidence	5	5	20	1.515572	3.932138	chr16	75433678	75434907	DNA|TcMar-Tigger|Tigger17	+	chr16	75433835	75436392	AC009163.6|ENST00000621929.1	+	75433835	75436392	0.950000
SK_N_DZ_nuclear_fraction	chr5	85663530	85663614	85663593	+	High_confidence	12	14	87	6.592739	5.860999	chr5	85657593	85663641	LINE|L1|L1PA2	-	chr5	85663231	85664684	AC010595.1|ENST00000507387.1	+	85663231	85664684	0.758621
SK_N_DZ_nuclear_fraction	chr14	100829398	100829605	100829523	+	High_confidence	8	8	72	5.456060	5.414862	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.694444
SK_N_DZ_nuclear_fraction	chr7	2242922	2242923	2242922	+	High_confidence	22	22	22	1.667129	3.936260	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
SK_N_DZ_nuclear_fraction	chr8	93698580	93698595	93698580	+	High_confidence	6	6	10	0.757786	2.947703	chr8	93698481	93698872	LTR|ERVL-MaLR|MLT1H2	+	chr8	93698560	93709779	FAM92A|ENST00000523475.5	+	93698560,93701223,93703619,93704908,93708010,93709770	93698747,93701458,93703688,93705010,93708016,93709779	0.600000
SK_N_DZ_nuclear_fraction	chr9	122463975	122464021	122464020	+	High_confidence	4	4	22	1.667129	3.784942	chr9	122461383	122464408	LINE|L1|L1PB1	-	chr9	122464285	122469401	MSTRG.43564.1	+	122464285,122468560	122464749,122469401	0.636364
SK_N_DZ_nuclear_fraction	chr18	68688722	68688850	68688832	-	RAMPAGE_only	3	3	32	2.424915	4.116729	chr18	68688816	68689060	LINE|L1|L1PA16	+	chr18	68673687	68715057	MSTRG.20218.1	-	68673687,68679462,68680980,68682924,68684189,68684427,68687666,68697225,68697931,68701744,68710020,68711363,68713845,68714935	68677193,68679531,68681110,68682981,68684243,68684485,68691361,68697303,68698031,68701790,68710144,68711403,68713900,68715057	1.000000
SK_N_DZ_nuclear_fraction	chr18	12420002	12420027	12420016	+	High_confidence	5	5	15	1.136679	3.323231	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12420016	12429364	PRELID3A|ENST00000587862.5	+	12420016,12420324,12421539,12427040,12427220,12429349	12420148,12420493,12421629,12427111,12427323,12429364	0.533333
SK_N_DZ_nuclear_fraction	chr10	107643353	107643406	107643373	-	RAMPAGE_only	3	4	21	1.591351	3.984184	chr10	107642604	107643383	LTR|ERVL|ERV3-16A3_I-int	-	chr10	107625748	107648905	MSTRG.5673.7	-	107625748,107639984	107638362,107648905	0.952381
SK_N_DZ_nuclear_fraction	chr5	160199150	160199156	160199155	+	High_confidence	324	378	706	53.499695	4.746286	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.933428
SK_N_DZ_nuclear_fraction	chr17	51153852	51153859	51153858	+	High_confidence	11	11	24	1.818687	4.251629	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51154043	51155759	NME1|ENST00000456492.1	+	51154043,51155650	51154444,51155759	0.666667
SK_N_DZ_nuclear_fraction	chr2	153872174	153872201	153872174	+	High_confidence	12	21	41	3.106923	4.565312	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.731707
SK_N_DZ_nuclear_fraction	chr7	122238908	122238987	122238986	-	High_confidence	28	28	83	6.289624	4.764166	chr7	122238520	122244551	LINE|L1|L1PA2	+	chr7	122238130	122238640	MSTRG.39834.1	-	122238130	122238640	0.771084
SK_N_DZ_nuclear_fraction	chr7	39013088	39013167	39013166	+	High_confidence	129	138	563	42.663354	5.816736	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.619893
SK_N_DZ_nuclear_fraction	chr8	2727079	2727144	2727091	+	High_confidence	4	5	20	1.515572	3.260828	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.850000
SK_N_DZ_nuclear_fraction	chr4	176189915	176189916	176189915	-	High_confidence	82	89	105	7.956753	4.689866	chr4	176189808	176190268	LTR|ERV1|LTR2	-	chr4	176184672	176190236	MSTRG.33451.3	-	176184672,176188118,176188893	176184892,176188235,176190236	0.933333
SK_N_DZ_nuclear_fraction	chr6	99411320	99411338	99411337	-	High_confidence	5	5	12	0.909343	2.751629	chr6	99411279	99411437	SINE|MIR|MIRc	-	chr6	99408152	99410992	PNISR|ENST00000463021.1	-	99408152,99409172	99408271,99410992	0.916667
SK_N_DZ_nuclear_fraction	chr21	45593653	45593676	45593653	+	High_confidence	29	31	48	3.637373	5.095176	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	0.812500
SK_N_DZ_nuclear_fraction	chr6	33844003	33844019	33844003	+	High_confidence	100	101	177	13.412813	5.436397	chr6	33843810	33844169	LTR|ERVL-MaLR|THE1B	+	chr6	33844011	33846870	MSTRG.36529.1	+	33844011,33845608	33844085,33846870	0.937853
SK_N_DZ_nuclear_fraction	chr12	31651986	31652008	31652007	-	High_confidence	188	241	439	33.266807	7.356866	chr12	31651758	31652374	LTR|ERV1|LTR9	+	chr12	31648340	31652047	MSTRG.8968.6	-	31648340,31651735	31651640,31652047	0.621868
SK_N_DZ_nuclear_fraction	chr1	46340161	46340170	46340167	+	High_confidence	3	3	11	0.833565	2.721928	chr1	46340061	46340361	SINE|Alu|AluYf1	-	chr1	46340176	46365152	NSUN4|NR_045789.1	+	46340176,46341322,46344800,46346920,46352867,46360703,46361569	46340919,46341497,46345144,46347075,46353028,46360828,46365152	0.909091
SK_N_DZ_nuclear_fraction	chr19	51354809	51354853	51354852	-	High_confidence	3	3	10	0.757786	2.846439	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
SK_N_DZ_nuclear_fraction	chr6	43013392	43013393	43013392	-	High_confidence	12	12	15	1.136679	3.506891	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
SK_N_DZ_nuclear_fraction	chr16	89958341	89958355	89958341	+	High_confidence	77	77	223	16.898629	6.659787	chr16	89958222	89958381	LTR|ERVL-MaLR|MLT1K	-	chr16	89958350	89959365	DEF8|ENST00000562044.1	+	89958350,89959013	89958533,89959365	0.614350
SK_N_DZ_nuclear_fraction	chr7	8233104	8233143	8233104	-	RAMPAGE_only	2	2	9	0.682007	2.725481	chr7	8233000	8233142	SINE|MIR|MIR1_Amn	-	chr7	8113922	8235926	ICA1|ENST00000422063.6	-	8113922,8127872,8138839,8138984,8141764,8141968,8143874,8157115,8158526,8218304,8221274,8228600,8232589,8235909	8114044,8128142,8138881,8139047,8141817,8142055,8143972,8157214,8158652,8218503,8221398,8228673,8232755,8235926	1.000000
SK_N_DZ_nuclear_fraction	chr20	35732293	35732389	35732367	-	High_confidence	5	7	43	3.258480	3.872116	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.953488
SK_N_DZ_nuclear_fraction	chr7	87039786	87039870	87039797	-	RAMPAGE_only	13	21	64	4.849831	5.264601	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.531250
SK_N_DZ_nuclear_fraction	chr15	82067905	82067919	82067905	+	High_confidence	6	6	15	1.136679	3.189898	chr15	82067835	82068063	SINE|Alu|AluYc	-	chr15	82068034	82069442	MSTRG.14603.1	+	82068034,82069228	82068102,82069442	0.600000
SK_N_DZ_nuclear_fraction	chr6	56906478	56906484	56906483	-	RAMPAGE_only	6	6	18	1.364015	3.690117	chr6	56906231	56906849	LTR|ERV1|LTR9	+	chr6	56640466	56954628	DST|ENST00000449297.6	-	56640466,56641946,56642409,56645865,56646086,56648569,56650925,56651131,56670640,56699652,56701887,56704279,56735227,56851396,56900420,56953784,56954406	56640605,56642101,56642503,56645993,56646182,56648689,56651032,56651244,56670807,56699745,56701965,56704369,56735289,56851604,56900621,56953819,56954628	0.666667
SK_N_DZ_nuclear_fraction	chr20	3795746	3795789	3795782	+	High_confidence	8	8	31	2.349137	4.106949	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
SK_N_DZ_nuclear_fraction	chr7	116724043	116724122	116724121	+	High_confidence	64	68	254	19.247765	6.688656	chr7	116718497	116724489	LINE|L1|L1PA2	-	chr7	116724030	116798175	MSTRG.39788.5	+	116724030,116724692,116731667,116739949,116740851,116755354,116757436,116757637,116758458,116759390,116763049,116769644,116771497,116771848,116774880,116777388,116778775,116781987,116783303,116795654,116795886	116724164,116724847,116731859,116740084,116741025,116755515,116757539,116757774,116758620,116759490,116763268,116769791,116771654,116771989,116775111,116777469,116778957,116782097,116783469,116795791,116798175	0.625984
SK_N_DZ_nuclear_fraction	chr11	74747193	74747250	74747249	+	RAMPAGE_only	11	11	41	3.106923	4.967308	chr11	74747182	74747456	SINE|Alu|AluJb	-	chr11	74748867	74842413	RNF169|NM_001098638.1	+	74748867,74789625,74810183,74817595,74834675,74835545	74749382,74789699,74810330,74817714,74834775,74842413	0.707317
SK_N_DZ_nuclear_fraction	chr8	143039464	143039491	143039464	+	High_confidence	2	2	9	0.682007	2.725481	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039294	143059942	C8orf31|ENST00000519775.2	+	143039294,143047678,143049208,143059652	143039569,143047814,143049298,143059942	0.888889
SK_N_DZ_nuclear_fraction	chr8	11795569	11795571	11795569	+	High_confidence	53	68	91	6.895853	4.358002	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287744.1	+	11795572,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.945055
SK_N_DZ_nuclear_fraction	chr7	6590278	6590300	6590278	+	High_confidence	3	3	10	0.757786	2.921928	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.500000
SK_N_DZ_nuclear_fraction	chr20	44696111	44696112	44696111	-	High_confidence	6	7	8	0.606229	2.500000	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.625000
SK_N_DZ_nuclear_fraction	chr5	4615803	4615892	4615813	-	High_confidence	31	33	239	18.111086	6.338718	chr5	4615428	4621437	LINE|L1|L1PA2	+	chr5	4527806	4616070	MSTRG.33670.1	-	4527806,4615423	4530076,4616070	0.606695
SK_N_DZ_nuclear_fraction	chr1	168354393	168354429	168354420	+	High_confidence	100	104	323	24.476489	7.397330	chr1	168348862	168354879	LINE|L1|L1PA2	-	chr1	168354416	168582077	MSTRG.3039.5	+	168354416,168379608,168559605,168567929,168580062,168581051	168354910,168379782,168567876,168576698,168580177,168582077	0.736842
SK_N_DZ_nuclear_fraction	chr3	98733165	98733288	98733173	+	High_confidence	11	16	123	9.320768	5.348910	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.658537
SK_N_DZ_nuclear_fraction	chr1	22428826	22428871	22428826	+	High_confidence	4	4	21	1.591351	4.201841	chr1	22428699	22428944	LTR|ERVL-MaLR|MLT1J	+	chr1	22428837	22511763	ZBTB40|ENST00000650433.1	+	22428837,22489879,22491399,22506048,22508000,22508529,22509099,22511178,22511675	22429014,22490645,22491533,22506241,22508137,22508731,22509233,22511347,22511763	0.761905
SK_N_DZ_nuclear_fraction	chr18	1408414	1408445	1408426	-	High_confidence	3	4	16	1.212458	3.500000	chr18	1408283	1408408	LTR|ERVL-MaLR|MLT1H	-	chr18	1368088	1408344	LINC00470|ENST00000582570.1	-	1368088,1408246	1368597,1408344	0.562500
SK_N_DZ_nuclear_fraction	chr2	205188085	205188104	205188102	+	RAMPAGE_only	12	16	25	1.894465	3.863465	chr2	205187953	205188316	LINE|L2|L2c	-	chr2	204965151	205620162	PARD3B|ENST00000614500.3	+	204965151,205047580,205104425,205113490,205118920,205121590,205124326,205125608,205158721,205172210,205176444,205185763,205193204,205245777,205301463,205401012,205440369,205499895,205553323,205615455	204965323,205047690,205104514,205113577,205119046,205121949,205124466,205125737,205158907,205172381,205176577,205185863,205193320,205245822,205301701,205401123,205440672,205500031,205553403,205620162	0.920000
SK_N_DZ_nuclear_fraction	chr1	6200576	6200637	6200609	-	High_confidence	4	4	25	1.894465	3.386842	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.960000
SK_N_DZ_nuclear_fraction	chr2	3536839	3536887	3536862	-	RAMPAGE_only	6	6	32	2.424915	4.696132	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531983	3558289	MSTRG.22862.3	-	3531983,3533107,3533710,3536197,3536723,3545700,3547930,3548639,3549057,3550372,3552143,3556788,3558132	3532310,3533190,3534255,3536313,3536911,3545871,3548055,3548724,3549112,3550472,3552308,3556904,3558289	0.656250
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	10425608	10425616	10425615	+	RAMPAGE_only	13	13	20	1.237641	3.300559	chr1	10425394	10425655	LTR|ERVK|LTR5_Hs	+	chr1	10430101	10442815	APITD1|NM_199294.2	+	10430101,10433841,10434656,10440346,10442264	10430568,10433965,10434690,10440413,10442815	0.600000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr11	5505651	5505652	5505651	-	High_confidence	10	10	12	0.742584	3.418296	chr11	5505485	5505844	LTR|ERVL-MaLR|THE1B	-	chr11	5268344	5505652	HBE1|ENST00000292896.3	-	5268344,5269453,5269798,5505568	5268597,5269676,5270156,5505652	0.500000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	70993073	70993074	70993073	+	High_confidence	15	15	18	1.113877	3.149673	chr4	70992983	70993102	SINE|MIR|MIR	+	chr4	70993438	71030914	DCK|ENST00000286648.9	+	70993438,70998066,71022366,71023558,71025815,71026664,71029351	70993926,70998182,71022560,71023706,71025931,71026755,71030914	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	169813007	169813015	169813014	-	High_confidence	7	7	16	0.990112	2.727217	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812986	LRRC34|ENST00000522526.6	-	169793472,169795484,169796213,169796744,169804052,169806847,169807425,169807587,169808627,169812409	169793838,169795611,169796369,169796899,169804181,169806931,169807490,169807709,169808745,169812986	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	39013108	39013167	39013166	+	High_confidence	23	23	107	6.621377	4.452633	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.813084
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr14	81110372	81110436	81110372	+	RAMPAGE_only	17	17	90	5.569383	4.328385	chr14	81110181	81110592	LTR|ERVL-MaLR|MLT1B	+	chr14	81078701	81143746	TSHR|ENST00000636454.1	+	81078701,81087953,81091068,81092530,81096638,81108374,81139678,81142939	81078936,81088028,81091143,81092608,81096707,81108452,81139867,81143746	0.666667
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr10	107033182	107033183	107033182	-	RAMPAGE_only	25	25	26	1.608933	3.813661	chr10	107032984	107033371	LTR|ERVL-MaLR|MSTA	-	chr10	106573670	106956583	SORCS1|ENST00000612154.4	-	106573670,106579090,106579368,106597350,106607165,106611910,106618148,106620427,106629201,106652381,106667688,106671236,106672867,106675048,106677312,106679255,106679631,106688191,106699213,106706544,106709222,106730049,106761587,106776533,106829573,106956512	106577555,106579251,106579474,106597450,106607297,106612023,106618272,106620561,106629388,106652553,106667802,106671367,106672985,106675156,106677404,106679332,106679734,106688338,106699393,106706634,106709341,106730114,106761661,106776692,106829673,106956583	0.615385
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr6	34998724	34998725	34998724	+	High_confidence	154	155	159	9.839243	6.159622	chr6	34998360	34998835	LTR|ERV1|LTR2B	+	chr6	34998090	35091413	MSTRG.26754.4	+	34998090,35017472,35054098,35060146,35078557,35079515,35079820,35080993,35082690,35083154,35083416,35084120,35085765,35086951,35088605	34999101,35018059,35054165,35060253,35078656,35079668,35079928,35081158,35082816,35083226,35083503,35084258,35085936,35087049,35091413	0.792453
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	162874632	162874634	162874632	-	RAMPAGE_only	21	40	40	2.475281	4.634184	chr1	162874383	162874749	LTR|ERVL-MaLR|MLT1C	-	chr1	162851315	162868815	CCDC190|ENST00000367912.6	-	162851315,162855086,162855631,162859459,162868652	162853161,162855359,162855755,162859658,162868815	0.800000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	70401464	70401505	70401504	+	RAMPAGE_only	5	5	28	1.732697	3.600767	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70751183	70795914	AC139272.1|ENST00000505516.2	+	70751183,70785437,70789207,70791131,70795780	70751232,70785625,70789292,70791315,70795914	0.750000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	159005961	159005962	159005961	+	High_confidence	24	25	27	1.670815	3.630275	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.592593
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	84583325	84583329	84583328	-	High_confidence	135	136	204	12.623934	6.525997	chr1	84583111	84583698	LTR|ERV1|LTR9	+	chr1	84498349	84583358	MSTRG.1341.4	-	84498349,84501825,84554346,84563256,84563734,84565840,84570581,84582277,84582856	84498548,84501970,84555199,84563418,84563832,84566012,84570720,84582358,84583358	0.700980
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	113773650	113773686	113773650	-	High_confidence	100	112	226	13.985339	6.159716	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113745703	113773663	LINC01234|ENST00000550223.5	-	113745703,113767074,113773614	113746595,113767208,113773663	0.827434
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr10	88361099	88361117	88361116	-	RAMPAGE_only	6	6	10	0.618820	2.725481	chr10	88360932	88361313	LTR|ERVL-MaLR|MLT1A	-	chr10	88284958	88583213	RNLS|ENST00000331772.8	-	88284958,88314465,88362551,88572902,88581566,88582201,88583072	88285506,88314641,88362725,88573061,88581709,88582307,88583213	0.700000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chrX	87728640	87728691	87728678	-	High_confidence	9	9	47	2.908455	4.038453	chrX	87728475	87728831	LTR|ERV1|MER61A	-	chrX	87723928	87728648	MSTRG.32850.1	-	87723928,87728443	87724212,87728648	0.936170
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr22	29550836	29550844	29550836	-	RAMPAGE_only	5	5	10	0.618820	3.321928	chr22	29550799	29551148	DNA|hAT-Charlie|MER113	+	chr22	29508330	29549157	THOC5|ENST00000358079.8	-	29508330,29511105,29512020,29517028,29517262,29519005,29520007,29520997,29525837,29528077,29528425,29528936,29531830,29536623,29539329,29542858,29543414,29544459,29549051	29508520,29511296,29512136,29517116,29517366,29519120,29520104,29521099,29525946,29528177,29528466,29529239,29531963,29536738,29539476,29542956,29543542,29544603,29549157	0.900000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr22	50330674	50330680	50330679	+	RAMPAGE_only	7	7	16	0.990112	3.375000	chr22	50330424	50330745	SINE|Alu|AluY	+	chr22	50343303	50445090	PPP6R2|ENST00000359139.7	+	50343303,50372019,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439697,50439960,50440821,50443865,50444202	50343550,50372150,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50445090	0.750000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr16	30499535	30499551	30499550	-	High_confidence	33	33	75	4.641152	4.485551	chr16	30499510	30499629	SINE|MIR|MIR1_Amn	+	chr16	30498765	30499554	AC116348.2|ENST00000563751.1	-	30498765,30499363	30499151,30499554	0.946667
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr16	4355592	4355593	4355592	-	High_confidence	770	781	782	48.391748	4.624374	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.982097
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr19	5680240	5680259	5680248	-	High_confidence	13	18	48	2.970337	4.165401	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	83912693	83912694	83912693	+	High_confidence	3230	3251	3504	216.834635	8.406337	chr8	83912425	83912831	LTR|ERVK|LTR14B	+	chr8	83912712	83995256	MSTRG.30374.1	+	83912712,83967327,83979924	83912835,83978766,83995256	0.641267
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	21341833	21341848	21341833	+	High_confidence	4	5	13	0.804466	2.522055	chr5	21341224	21342284	LTR|ERV1|LTR12E	+	chr5	21341832	21544777	GUSBP1|ENST00000508260.5	+	21341832,21405684,21459677,21461782,21491320,21495097,21497021,21501691,21544718	21341976,21405760,21459743,21461866,21491508,21495182,21497196,21501826,21544777	0.923077
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	121582273	121582279	121582278	-	RAMPAGE_only	7	7	15	0.928230	3.093069	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121429095	121581015	KDM2B|NM_032590.4	-	121429095,121439856,121440815,121441069,121442156,121442991,121443679,121444011,121444449,121445274,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549459,121574546,121575780,121578801,121580785	121430469,121440075,121440977,121441233,121442836,121443030,121443793,121444272,121444536,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548983,121549638,121574593,121575859,121578946,121581015	0.533333
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	122383132	122383180	122383179	+	RAMPAGE_only	3	3	14	0.866348	2.692381	chr5	122377544	122383563	LINE|L1|L1PA2	-	chr5	122391088	122464219	SNCAIP|NM_001308108.1	+	122391088,122403792,122425351,122431968,122440628,122444562,122449844,122450532,122463490	122391191,122403865,122425531,122432082,122440754,122444732,122449937,122451601,122464219	0.571429
SK_N_DZ_treated_with_dimethyl_sulfoxide	chrX	155175657	155175663	155175662	+	RAMPAGE_only	10	13	16	0.990112	3.875000	chrX	155175467	155175829	LTR|ERVL-MaLR|THE1B	+	chrX	155197006	155239841	VBP1|NM_001303544.1	+	155197006,155208873,155220182,155227234,155228383,155236228,155238771	155197139,155208981,155220307,155227301,155228482,155236367,155239841	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr13	32532013	32532015	32532014	-	RAMPAGE_only	5	7	9	0.556938	2.500000	chr13	32531749	32532214	LTR|ERVL-MaLR|MLT1D	-	chr13	32432830	32536383	MSTRG.8003.20	-	32432830,32436360,32438651,32442387,32517856,32521372,32527407	32432972,32436405,32438737,32444124,32518003,32526588,32536383	0.555556
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	116830186	116830191	116830186	-	High_confidence	3	4	8	0.495056	2.750000	chr5	116830073	116830291	LTR|ERVL|LTR33B	-	chr5	116820992	116830187	AC010267.1|ENST00000508636.1	-	116820992,116825528,116830124	116821137,116825873,116830187	0.625000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	20658312	20658349	20658338	+	High_confidence	15	23	102	6.311967	4.699094	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.627451
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	101466874	101466875	101466874	-	RAMPAGE_only	5	5	7	0.433174	2.584963	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.571429
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	15001789	15001826	15001825	+	High_confidence	5	5	18	1.113877	3.392147	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.888889
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr14	81170372	81170414	81170413	-	High_confidence	6	11	42	2.599045	4.689704	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.857143
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	107580245	107580267	107580264	+	High_confidence	151	153	805	49.815035	6.389649	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.947826
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr16	58755976	58755977	58755976	-	RAMPAGE_only	13	14	14	0.866348	3.180833	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	0.928571
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr16	13779762	13779763	13779762	-	High_confidence	6	6	8	0.495056	2.750000	chr16	13779489	13780125	LTR|ERV1|LTR9	+	chr16	13730136	13779748	U95743.1|ENST00000573369.5	-	13730136,13767036,13777719,13778900,13779697	13730436,13767366,13777844,13779095,13779748	0.875000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	64056840	64056879	64056854	-	RAMPAGE_only	4	4	11	0.680702	2.721928	chr12	64056581	64057009	LINE|L2|L2a	+	chr12	64038561	64097618	AC020611.2|ENST00000535594.1	-	64038561,64042804,64097485	64038963,64042940,64097618	0.909091
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr15	33194695	33194715	33194695	-	High_confidence	25	26	123	7.611490	5.336398	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.869919
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	6783579	6783580	6783579	+	RAMPAGE_only	5	7	7	0.433174	2.521641	chr12	6783596	6783716	SINE|MIR|MIRc	+	chr12	6867118	6870948	TPI1|ENST00000229270.8	+	6867118,6868863,6869098,6869257,6869687,6870048,6870264	6867681,6868987,6869183,6869390,6869773,6870136,6870948	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr22	24011756	24011757	24011756	+	High_confidence	10	10	10	0.618820	2.846439	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr17	64930271	64930291	64930290	+	High_confidence	5	5	12	0.742584	2.792481	chr17	64930021	64930983	LTR|ERVK|LTR5_Hs	+	chr17	64930148	64934203	AC103810.1|ENST00000583052.1	+	64930148,64930717,64931202,64934042	64930350,64930868,64931287,64934203	0.750000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	151158498	151158509	151158498	-	High_confidence	4	4	11	0.680702	2.663533	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.636364
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	115320499	115320519	115320518	-	High_confidence	13	14	34	2.103989	4.263933	chr12	115320388	115320473	LINE|L2|L2c	-	chr12	115318656	115320405	AC078880.4|ENST00000617627.1	-	115318656	115320405	0.882353
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	15657883	15657884	15657883	+	RAMPAGE_only	14	14	14	0.866348	3.521641	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr17	47067498	47067534	47067498	-	High_confidence	174	192	766	47.401635	6.083431	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47017692	47067488	MSTRG.13782.5	-	47017692,47021581,47033277,47054117,47067413	47018465,47021721,47033381,47056753,47067488	0.964752
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	119404364	119404367	119404364	-	RAMPAGE_only	32	38	71	4.393624	4.089495	chr7	119404153	119404632	LTR|ERVL-MaLR|MLT1H2	+	chr7	119355999	119398268	MSTRG.29149.1	-	119355999,119357957,119391499,119398219	119356443,119358036,119391660,119398268	0.802817
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr14	61463036	61463057	61463036	+	RAMPAGE_only	2	2	9	0.556938	2.503258	chr14	61463043	61463245	SINE|MIR|MIRb	+	chr14	61477166	61549946	PRKCH|ENST00000536400.5	+	61477166,61485501,61529074,61530406,61547742,61549684	61477245,61485656,61529213,61530595,61547886,61549946	0.555556
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr10	120473772	120473775	120473774	+	RAMPAGE_only	7	11	13	0.804466	3.085055	chr10	120473589	120473965	LTR|ERVL-MaLR|MSTA	+	chr10	120456953	120589855	PLPP4|ENST00000398250.5	+	120456953,120503817,120513910,120518832,120520970,120575130,120589302	120457361,120503926,120514001,120518896,120521095,120575301,120589855	0.615385
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	168354393	168354431	168354420	+	High_confidence	33	33	141	8.725366	6.036551	chr1	168348862	168354879	LINE|L1|L1PA2	-	chr1	168354403	168581409	MSTRG.2260.2	+	168354403,168379608,168559605,168567929,168576261,168580062,168581051	168354910,168379782,168567876,168575868,168576698,168580177,168581409	0.836879
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	128921399	128921413	128921399	+	High_confidence	72	74	142	8.787248	5.871987	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.957746
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr19	34860388	34860395	34860394	-	High_confidence	3	3	10	0.618820	2.503258	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34848855	34860663	MSTRG.16082.1	-	34848855,34860173	34849549,34860663	0.800000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr21	38121491	38121539	38121491	+	High_confidence	310	316	696	43.069893	6.415108	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.942529
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr20	3795740	3795783	3795782	+	High_confidence	11	20	52	3.217866	4.300555	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr19	34860565	34860634	34860565	-	High_confidence	29	31	135	8.354074	4.262816	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34848855	34860663	MSTRG.16082.1	-	34848855,34860173	34849549,34860663	0.948148
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr15	40765568	40765607	40765592	+	High_confidence	15	15	38	2.351517	3.430209	chr15	40765434	40765599	SINE|Alu|FRAM	-	chr15	40765619	40767708	GCHFR|ENST00000558467.1	+	40765619,40767225	40765921,40767708	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	160199150	160199156	160199150	+	High_confidence	710	756	1293	80.013466	5.262277	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.966744
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	96637945	96637976	96637958	-	High_confidence	6	6	22	1.361405	3.408549	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.727273
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	82894476	82894477	82894476	-	High_confidence	8	10	12	0.742584	3.459432	chr7	82894311	82894657	LTR|ERVL-MaLR|THE1B	-	chr7	82822096	82894454	PCLO|ENST00000426442.6	-	82822096,82824235,82826588,82827872,82838217,82841458,82845270,82846566,82847146,82879336,82894396	82822689,82824416,82826660,82827966,82838342,82841509,82845485,82846634,82847247,82879462,82894454	0.583333
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	98891329	98891330	98891329	-	High_confidence	4	4	7	0.433174	2.584963	chr4	98891322	98891802	LINE|L1|L1MB2	+	chr4	98881009	98890898	EIF4E|ENST00000505194.5	-	98881009,98884921,98887078,98887888,98890786	98881142,98885061,98887192,98887952,98890898	0.714286
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr21	45593653	45593654	45593653	+	High_confidence	32	34	42	2.599045	3.913357	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	0.928571
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	168354772	168354880	168354772	+	High_confidence	26	26	171	10.581827	6.549995	chr1	168348862	168354879	LINE|L1|L1PA2	-	chr1	168354403	168581409	MSTRG.2260.2	+	168354403,168379608,168559605,168567929,168576261,168580062,168581051	168354910,168379782,168567876,168575868,168576698,168580177,168581409	0.666667
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr17	40987057	40987081	40987057	-	High_confidence	9	9	18	1.113877	4.058814	chr17	40986869	40987070	LINE|L2|L2c	+	chr17	40977715	40987001	KRT40|ENST00000461923.5	-	40977715,40978803,40980784,40980989,40982306,40983045,40983826,40986303,40986921	40978296,40979024,40980910,40981324,40982463,40983128,40984274,40986374,40987001	0.888889
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	20658603	20658624	20658623	+	High_confidence	5	6	18	1.113877	2.771902	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.833333
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	55843648	55843655	55843648	+	High_confidence	23	25	45	2.784691	4.578088	chr8	55843428	55843826	LTR|ERVL-MaLR|MLT1B	+	chr8	55843656	55845430	MSTRG.30141.1	+	55843656	55845430	0.866667
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	69874447	69874448	69874447	+	High_confidence	5	5	8	0.495056	2.521641	chr9	69874447	69874593	LTR|ERVL-MaLR|MLT1K	-	chr9	69873516	69915057	MSTRG.31398.8	+	69873516,69886837,69905953	69875261,69886895,69915057	0.875000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chrX	16712889	16712959	16712889	-	High_confidence	25	26	95	5.878793	5.456440	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.936842
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr19	12800944	12801038	12800953	-	High_confidence	11	11	61	3.774804	4.204575	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.983607
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	205188102	205188103	205188102	+	RAMPAGE_only	7	7	10	0.618820	2.947703	chr2	205187953	205188316	LINE|L2|L2c	-	chr2	204965151	205620162	PARD3B|ENST00000614500.3	+	204965151,205047580,205104425,205113490,205118920,205121590,205124326,205125608,205158721,205172210,205176444,205185763,205193204,205245777,205301463,205401012,205440369,205499895,205553323,205615455	204965323,205047690,205104514,205113577,205119046,205121949,205124466,205125737,205158907,205172381,205176577,205185863,205193320,205245822,205301701,205401123,205440672,205500031,205553403,205620162	0.900000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr19	44914321	44914322	44914321	+	High_confidence	12	12	17	1.051995	3.327820	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.882353
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	95837528	95837539	95837528	+	High_confidence	5	5	9	0.556938	2.500000	chr7	95831968	95837992	LINE|L1|L1PA3	-	chr7	95837617	96028321	DYNC1I1|ENST00000519371.1	+	95837617,95869882,95977511,95984814,95987055,95995947,96028174	95837649,95869998,95977601,95984977,95987155,95996073,96028321	0.555556
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr6	3195772	3195779	3195772	-	High_confidence	511	524	958	59.282985	6.323971	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.933194
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr6	57961647	57961648	57961647	+	High_confidence	11	11	14	0.866348	2.896292	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961437	57973690	AL445250.1|ENST00000641671.1	+	57961437,57962180,57965516,57971594,57972093	57961742,57962248,57965743,57971656,57973690	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	147173173	147173250	147173173	+	High_confidence	15	15	77	4.764916	5.236166	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.883117
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr13	33818355	33818378	33818377	+	High_confidence	3	3	12	0.742584	3.084963	chr13	33818361	33818761	LINE|L2|L2a	-	chr13	33818068	33837507	RFC3|NM_002915.3	+	33818068,33821131,33823916,33825788,33829835,33830718,33831255,33835147,33836103	33818265,33821269,33823984,33825886,33830017,33830855,33831354,33835217,33837507	0.916667
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	41359601	41359607	41359606	+	High_confidence	7	9	15	0.928230	2.950212	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.666667
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr18	12419845	12419905	12419903	+	High_confidence	20	33	102	6.311967	5.616187	chr18	12419938	12420117	SINE|Alu|AluJr	+	chr18	12419891	12427322	PRELID3A|ENST00000589952.5	+	12419891,12420324,12421539,12427040,12427220	12419947,12420493,12421629,12427111,12427322	0.598039
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	2242922	2242923	2242922	+	High_confidence	38	38	38	2.351517	4.165838	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	133703532	133703584	133703572	-	High_confidence	39	39	98	6.064439	3.645280	chr9	133703436	133703570	SINE|MIR|MIR	-	chr9	133663563	133703701	SARDH|ENST00000371868.5	-	133663563,133666734,133670583,133671534,133685192,133690379,133694257,133696222,133702915	133664014,133666936,133670752,133671697,133685286,133690527,133694371,133696361,133703701	0.989796
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	93591534	93591590	93591534	+	High_confidence	14	14	58	3.589158	4.784216	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591103	93816299	MSTRG.28830.1	+	93591103,93807203	93591771,93816299	0.534483
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr11	17352281	17352295	17352281	+	High_confidence	17	17	28	1.732697	4.134336	chr11	17352168	17352474	SINE|Alu|AluY	-	chr11	17352296	17383531	MSTRG.4749.4	+	17352296,17356650,17367008,17368866,17372005	17354320,17357001,17367347,17368964,17383531	0.964286
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	83911208	83911237	83911208	+	RAMPAGE_only	2	2	8	0.495056	2.500000	chr8	83911201	83911697	LTR|ERV1|LOR1-int	+	chr8	83912712	83995256	MSTRG.30374.1	+	83912712,83967327,83979924	83912835,83978766,83995256	0.625000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr22	23536877	23536883	23536877	+	High_confidence	25	25	40	2.475281	4.199132	chr22	23536061	23537026	LTR|ERVK|LTR5_Hs	+	chr22	23536880	23539480	PCAT14|ENST00000629869.1	+	23536880,23538760	23537136,23539480	0.700000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr6	26956509	26956554	26956544	-	High_confidence	19	19	103	6.373849	4.894219	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.815534
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr20	50172544	50172595	50172589	+	High_confidence	15	16	68	4.207978	5.285561	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172589	50176671	LINC01273|ENST00000411453.2	+	50172589,50172922,50176280	50172788,50173017,50176671	0.558824
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr10	60917550	60917579	60917578	-	RAMPAGE_only	3	3	11	0.680702	2.732159	chr10	60917384	60917759	LTR|ERVL-MaLR|MLT1A	-	chr10	60869437	60944247	RHOBTB1|ENST00000337910.9	-	60869437,60872184,60874953,60877907,60886111,60888211,60892809,60910886,60911350,60941803,60943970	60871651,60872290,60875042,60878058,60886230,60889185,60892995,60910990,60911552,60941854,60944247	0.727273
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	4461944	4461961	4461960	-	High_confidence	16	16	25	1.547051	3.621654	chr4	4461848	4462205	LTR|ERVL|LTR79	+	chr4	4425160	4461954	STX18|ENST00000512195.5	-	4425160,4434769,4438393,4457190,4457422,4459371,4461905	4425222,4434858,4438509,4457257,4457500,4459487,4461954	0.840000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	235330459	235330461	235330459	+	RAMPAGE_only	9	14	17	1.051995	2.910992	chr1	235330202	235330492	SINE|Alu|AluYf1	+	chr1	235329028	235342559	GGPS1|ENST00000497327.1	+	235329028,235335241,235341707,235342010	235329183,235335334,235341778,235342559	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	62897430	62897467	62897430	+	High_confidence	143	143	246	15.222980	6.017574	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.939024
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	17692225	17692259	17692258	-	High_confidence	57	57	164	10.148653	5.919752	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.817073
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr18	80148048	80148049	80148048	+	High_confidence	35	35	38	2.351517	4.649115	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148010	80178432	PARD6G-AS1|ENST00000589574.1	+	80148010,80175879,80178085	80148254,80175935,80178432	0.526316
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	17890786	17890792	17890791	-	RAMPAGE_only	5	9	15	0.928230	3.189898	chr8	17890609	17890983	LTR|ERVL-MaLR|THE1C	-	chr8	17864583	17891809	FGL1|ENST00000518650.5	-	17864583,17868547,17868915,17874018,17874361,17881998,17885491,17891680	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891809	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	62376776	62376801	62376800	-	High_confidence	34	34	68	4.207978	4.403588	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.955882
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr21	18485883	18485884	18485883	-	High_confidence	21	22	27	1.670815	4.161978	chr21	18485714	18486071	LTR|ERVL-MaLR|THE1B	-	chr21	18365139	18485879	TMPRSS15|ENST00000422787.1	-	18365139,18372192,18379282,18380539,18383626,18397878,18398198,18485798	18365248,18372324,18379318,18380584,18383778,18397946,18398329,18485879	0.518519
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	186893444	186893473	186893472	+	RAMPAGE_only	5	5	16	0.990112	3.024397	chr3	186893219	186894186	LTR|ERVK|LTR5_Hs	+	chr3	186900197	186900557	RPS20P14|ENST00000412545.1	+	186900197	186900557	0.625000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	135965819	135965823	135965822	+	High_confidence	4	4	8	0.495056	2.521641	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.875000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	31651986	31652008	31652007	-	High_confidence	145	163	301	18.626491	6.441123	chr12	31651758	31652374	LTR|ERV1|LTR9	+	chr12	31624973	31652047	MSTRG.6562.1	-	31624973,31651735	31627726,31652047	0.644518
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	103255845	103255846	103255845	+	High_confidence	7	7	11	0.680702	2.845351	chr4	103250265	103256290	LINE|L1|L1PA2	-	chr4	103256158	103453658	LINC02428|ENST00000513793.5	+	103256158,103425054,103436934,103453599	103256294,103425185,103437046,103453658	0.636364
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr14	88627742	88627766	88627742	-	High_confidence	10	10	26	1.608933	3.840266	chr14	88627710	88627772	DNA|hAT-Ac|OldhAT1	-	chr14	88621209	88626941	EML5|ENST00000553320.5	-	88621209,88624969,88626837	88621301,88625127,88626941	0.846154
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	6918666	6918680	6918679	-	High_confidence	20	20	49	3.032219	4.730389	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.816327
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr22	18938871	18938895	18938894	+	High_confidence	2	3	10	0.618820	2.921928	chr22	18938673	18939641	LTR|ERVK|LTR5_Hs	+	chr22	18939445	18947692	AC007326.5|ENST00000638287.1	+	18939445,18946790	18939757,18947692	0.500000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	127451104	127451128	127451127	-	High_confidence	11	11	22	1.361405	3.118275	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.772727
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	112762631	112762680	112762631	+	High_confidence	20	20	99	6.126321	4.932775	chr1	112762625	112762805	SINE|MIR|MIRb	+	chr1	112762553	112797967	MSTRG.1612.1	+	112762553,112797591	112762746,112797967	0.969697
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	101308293	101308325	101308299	+	High_confidence	45	61	219	13.552165	5.694748	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.972603
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr14	40954490	40954548	40954516	+	High_confidence	37	37	212	13.118990	6.210361	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954458	41149507	MSTRG.8869.1	+	40954458,40962789,40974339,41140833	40954952,40962842,40974390,41149507	0.683962
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	5524722	5524727	5524722	+	High_confidence	78	78	124	7.673372	5.077964	chr4	5524701	5525232	LTR|ERV1|MER66C	-	chr4	5524568	5527801	LINC01587|NR_126519.1	+	5524568,5525406,5526215,5527387	5524728,5525496,5526333,5527801	0.943548
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	87039786	87039841	87039786	-	High_confidence	7	7	35	2.165871	4.597276	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86880076	87040231	MSTRG.28773.4	-	86880076,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040231	0.942857
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr19	571725	571755	571725	-	High_confidence	11	11	43	2.660927	4.320423	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567310	571734	AC009005.1|ENST00000590292.5	-	567310,571439,571696	567624,571596,571734	0.860465
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr15	74156252	74156264	74156252	-	RAMPAGE_only	5	8	13	0.804466	3.022055	chr15	74156094	74156504	LTR|ERV1|MER92A	+	chr15	74152799	74179226	AC010931.3|ENST00000561647.1	-	74152799,74156126,74179155	74153205,74156203,74179226	0.923077
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	26399368	26399448	26399442	-	High_confidence	41	45	149	9.220423	5.551379	chr7	26399411	26399720	DNA|hAT-Charlie|MER33	+	chr7	26397675	26399407	MSTRG.28162.1	-	26397675	26399407	0.583893
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	34244753	34244841	34244813	-	High_confidence	13	21	108	6.683259	4.921054	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.555556
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr14	40954422	40954433	40954432	+	High_confidence	9	11	16	0.990112	2.608459	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954458	41149507	MSTRG.8869.1	+	40954458,40962789,40974339,41140833	40954952,40962842,40974390,41149507	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr18	80147915	80147929	80147915	+	High_confidence	4	4	17	1.051995	3.057476	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.529412
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr19	58306086	58306087	58306086	+	High_confidence	18	18	26	1.608933	3.075085	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.769231
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr11	66438593	66438598	66438593	-	High_confidence	13	13	22	1.361405	3.697846	chr11	66438453	66438566	SINE|MIR|MIR	-	chr11	66435837	66438826	MRPL11|ENST00000534488.5	-	66435837,66437103,66437349,66438163,66438631	66436112,66437263,66437435,66438259,66438826	0.909091
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	110599451	110599482	110599463	+	High_confidence	8	8	24	1.485169	3.882045	chr9	110598558	110599925	LINE|L1|L1PA12	-	chr9	110599474	110605219	AL592463.1|ENST00000451108.1	+	110599474,110604417,110604709	110599528,110604488,110605219	0.708333
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr6	63805744	63805797	63805796	+	High_confidence	34	38	58	3.589158	4.956866	chr6	63805602	63805978	LTR|ERVL-MaLR|THE1D	+	chr6	63805640	63824100	MSTRG.27049.1	+	63805640,63821239	63805896,63824100	0.568966
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	99471765	99471779	99471765	-	RAMPAGE_only	12	12	26	1.608933	3.378727	chr7	99471609	99471877	SINE|Alu|AluSx1	+	chr7	99458194	99466331	ATP5MF|ENST00000292475.7	-	99458194,99459146,99460085,99466110	99458355,99459263,99460193,99466331	0.884615
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	193614819	193614855	193614841	+	High_confidence	3	4	16	0.990112	2.789898	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.875000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	60705151	60705178	60705151	-	RAMPAGE_only	4	5	10	0.618820	2.721928	chr1	60705033	60705200	SINE|MIR|MIRc	-	chr1	60667106	60867976	AC099792.1|ENST00000634701.1	-	60667106,60677195,60704777,60726409,60729574,60732446,60733463,60825335,60826421,60867916	60668335,60677412,60704959,60726476,60729667,60732508,60733522,60825385,60826585,60867976	0.500000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	16062549	16062597	16062549	-	High_confidence	32	35	77	4.764916	4.180821	chr2	16062363	16062737	LTR|ERVL-MaLR|THE1C	-	chr2	15997048	16062885	AC010145.1|ENST00000422415.2	-	15997048,16062480,16062820	15997412,16062567,16062885	0.727273
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	39013346	39013441	39013440	+	High_confidence	7	7	32	1.980225	3.801109	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.593750
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr22	47631766	47631776	47631769	+	High_confidence	12	16	30	1.856461	3.689902	chr22	47631336	47631805	LTR|ERVL|MLT2B1	-	chr22	47631673	47855600	AL117329.1|ENST00000423737.5	+	47631673,47635179,47686199,47686574,47686802,47687140,47704588,47738433,47854910	47631886,47635353,47686312,47686695,47686938,47687206,47704747,47738576,47855600	0.533333
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	140267867	140267912	140267867	+	RAMPAGE_only	8	8	56	3.465394	3.945803	chr4	140267433	140267902	LTR|ERVL|LTR33A_	+	chr4	140262229	140269870	MSTRG.24228.1	+	140262229,140263157,140266960,140267887,140269385	140262365,140263344,140267177,140267981,140269870	0.964286
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	83911056	83911057	83911056	+	RAMPAGE_only	68	78	92	5.693147	5.365979	chr8	83911058	83911187	LTR|ERV1|LTR38A1	+	chr8	83912712	83995256	MSTRG.30374.1	+	83912712,83967327,83979924	83912835,83978766,83995256	0.510870
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr11	90240613	90240695	90240633	+	High_confidence	25	40	169	10.458063	6.193179	chr11	90240087	90241455	LINE|L1|L1P1	+	chr11	90240624	90604509	MSTRG.5684.1	+	90240624,90546753,90602804,90604078	90241441,90546895,90602908,90604509	0.970414
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	55618850	55618904	55618850	-	High_confidence	28	32	106	6.559495	5.291350	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.962264
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	6816926	6816928	6816927	+	RAMPAGE_only	6	9	12	0.742584	3.022055	chr12	6816919	6817009	SINE|MIR|MIRb	-	chr12	6818375	6820809	MSTRG.6203.13	+	6818375,6818846,6819298	6818650,6818914,6820809	0.583333
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr21	33945809	33945810	33945809	-	RAMPAGE_only	51	52	52	3.217866	3.822647	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	0.980769
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	153872167	153872175	153872167	+	High_confidence	3	3	11	0.680702	2.913977	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.909091
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	3746025	3746068	3746025	+	RAMPAGE_only	2	4	14	0.866348	3.521641	chr4	3745864	3746117	LINE|L1|L1MC4	+	chr4	3747380	3747665	MSTRG.23329.1	+	3747380	3747665	0.571429
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	140267619	140267630	140267626	+	RAMPAGE_only	4	4	14	0.866348	3.085055	chr4	140267433	140267902	LTR|ERVL|LTR33A_	+	chr4	140262229	140269870	MSTRG.24228.1	+	140262229,140263157,140266960,140267887,140269385	140262365,140263344,140267177,140267981,140269870	0.928571
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	74506461	74506494	74506480	-	High_confidence	5	5	16	0.990112	2.983459	chr2	74506295	74506592	SINE|Alu|AluYh3	+	chr2	74505042	74507151	PCGF1|ENST00000465993.5	-	74505042,74505338,74505551,74505736,74506731,74507041	74505190,74505419,74505612,74505770,74506884,74507151	0.750000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	11681436	11681447	11681436	+	High_confidence	208	218	341	21.101772	6.487548	chr2	11681255	11681626	LTR|ERVL-MaLR|MSTA	+	chr2	11681459	11683323	AC106875.1|ENST00000455754.1	+	11681459,11682297	11681492,11683323	0.785924
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr13	29647217	29647247	29647246	+	High_confidence	8	9	17	1.051995	2.727497	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.529412
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	156367865	156367898	156367878	-	High_confidence	238	325	740	45.792703	6.870122	chr1	156367719	156368094	LINE|L2|L2c	+	chr1	156320839	156367873	CCT3|ENST00000446905.5	-	156320839,156324971,156333546,156335826,156367743	156321025,156325089,156333643,156335888,156367873	0.827027
SK_N_DZ_treated_with_dimethyl_sulfoxide	chrX	75188557	75188584	75188583	+	RAMPAGE_only	24	26	44	2.722809	4.606937	chrX	75183022	75189043	LINE|L1|L1PA5	-	chrX	75274058	75304897	UPRT|NM_145052.3	+	75274058,75293471,75296341,75297490,75299734,75300866,75303404	75274640,75293514,75296411,75297553,75299896,75300965,75304897	0.522727
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	795519	795520	795519	+	RAMPAGE_only	9	9	14	0.866348	2.873141	chr12	795326	795676	LTR|ERVL-MaLR|THE1B	+	chr12	829924	861135	WNK1|ENST00000540360.5	+	829924,857160,859244,861012	830160,857249,859464,861135	0.500000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	99947915	99947964	99947915	-	RAMPAGE_only	6	6	25	1.547051	3.886842	chr12	99947589	99948193	LTR|ERVL-MaLR|MLT1E2	-	chr12	98735421	99984237	ANKS1B|ENST00000547776.6	-	98735421,98751354,98773041,98781116,98782125,98798933,98800996,98829173,98832028,99053156,99084924,99154288,99244341,99246274,99399630,99443672,99504475,99655066,99772921,99775547,99779870,99782021,99806403,99812154,99825308,99984103	98735634,98751522,98773179,98781203,98782137,98799005,98801125,98829353,98832136,99053309,99085023,99154395,99244414,99246864,99399811,99443809,99504641,99655210,99773088,99775661,99779972,99782097,99806700,99812311,99825389,99984237	0.520000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	9363405	9363420	9363419	+	High_confidence	6	7	24	1.485169	3.418296	chr3	9363443	9363535	LINE|L2|L2b	+	chr3	9363097	9384870	THUMPD3|ENST00000515662.6	+	9363097,9365015,9366907,9371059,9374515,9377818,9380502,9383198,9384211,9384523	9363728,9365320,9366985,9371536,9374646,9377888,9380618,9383309,9384335,9384870	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	153871921	153871922	153871921	+	High_confidence	11	11	13	0.804466	2.855389	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.923077
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr10	65570509	65570540	65570509	+	High_confidence	23	24	108	6.683259	5.769669	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570501	65585801	LINC01515|ENST00000599409.5	+	65570501,65571424,65572934,65585484,65585664	65570759,65571579,65573056,65585567,65585801	0.509259
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr15	82546441	82546442	82546441	-	RAMPAGE_only	16	17	17	1.051995	3.577820	chr15	82546117	82546394	SINE|Alu|AluSx1	-	chr15	82536749	82540564	RPS17|ENST00000330244.11	-	82536749,82538305,82538879,82539980,82540425	82536881,82538371,82538985,82540132,82540564	0.941176
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	147382877	147382900	147382886	+	High_confidence	12	15	61	3.774804	4.602213	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.770492
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	69551877	69551878	69551877	+	High_confidence	127	128	177	10.953119	6.297602	chr1	69551506	69552150	LTR|ERV1|LTR9	-	chr1	69551850	69565717	MSTRG.1237.1	+	69551850,69555417,69556935,69557779,69563606	69551943,69555465,69556993,69559819,69565717	0.615819
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	103416352	103416353	103416352	+	RAMPAGE_only	6	7	7	0.433174	2.521641	chr4	103416312	103416527	LTR|ERVL-MaLR|THE1B	+	chr4	103256158	103453658	LINC02428|ENST00000513793.5	+	103256158,103425054,103436934,103453599	103256294,103425185,103437046,103453658	0.714286
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	151958866	151958869	151958866	+	High_confidence	298	327	438	27.104329	6.968926	chr5	151958688	151959037	LTR|ERVL-MaLR|THE1B	+	chr5	151958897	152270445	LINC01933|ENST00000524034.5	+	151958897,152267264,152270194	151958954,152267355,152270445	0.657534
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	9391827	9391828	9391827	-	High_confidence	32	32	34	2.103989	4.663910	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9389914	9391822	THUMPD3-AS1|ENST00000522221.1	-	9389914,9391426	9390497,9391822	0.529412
SK_N_DZ_treated_with_dimethyl_sulfoxide	chrX	119633392	119633407	119633392	-	High_confidence	3	3	8	0.495056	2.500000	chrX	119632927	119633346	LINE|L1|L1PA10	-	chrX	119619308	119633424	SEPT6|ENST00000467310.1	-	119619308,119625334,119629317,119633359	119620051,119625396,119629508,119633424	0.750000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr14	88824135	88824139	88824138	+	High_confidence	109	111	168	10.396181	6.066816	chr14	88824007	88824142	SINE|MIR|MIR3	+	chr14	88824152	88877995	TTC8|ENST00000536576.5	+	88824152,88824573,88839451,88840864,88841036,88843805,88852970,88857189,88861221,88870058,88871548,88872329,88875025,88877293	88824214,88824821,88839572,88840928,88841196,88843850,88853056,88857277,88861332,88870198,88871723,88872452,88875109,88877995	0.666667
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	119398264	119398341	119398340	-	High_confidence	29	31	121	7.487726	4.579528	chr7	119398188	119398439	SINE|Alu|AluSx1	-	chr7	119355999	119398268	MSTRG.29149.1	-	119355999,119357957,119391499,119398219	119356443,119358036,119391660,119398268	0.851240
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	15547679	15547721	15547720	-	RAMPAGE_only	8	8	26	1.608933	3.459471	chr7	15547309	15553333	LINE|L1|L1PA2	+	chr7	15200317	15562015	AGMO|NM_001004320.1	-	15200317,15365513,15366139,15385445,15387405,15390670,15390839,15394112,15418557,15431004,15544771,15560140,15561719	15201359,15365619,15366222,15385562,15387540,15390750,15390905,15394179,15418653,15431108,15544923,15560271,15562015	0.807692
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	10363706	10363708	10363706	+	High_confidence	6	10	13	0.804466	3.084963	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.615385
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr11	123060115	123060253	123060174	-	High_confidence	30	33	270	16.708148	5.485624	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.655556
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr10	101730060	101730139	101730118	-	High_confidence	50	59	340	21.039890	5.240332	chr10	101729855	101730163	SINE|Alu|AluY	+	chr10	101673564	101730146	MSTRG.4112.6	-	101673564,101676340,101702119,101729716	101673673,101676436,101702295,101730146	0.738235
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr21	33968445	33968470	33968466	-	High_confidence	4	4	16	0.990112	2.923231	chr21	33968191	33968612	LTR|ERVL-MaLR|MLT1J	-	chr21	33967100	33968573	AP000569.1|ENST00000607953.1	-	33967100,33968232	33967350,33968573	0.687500
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr15	53684573	53684642	53684641	-	High_confidence	19	20	74	4.579270	5.222703	chr15	53684199	53690229	LINE|L1|L1PA3	+	chr15	53665691	53684627	WDR72|ENST00000567575.1	-	53665691,53684145	53665768,53684627	0.743243
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr6	118651592	118651602	118651592	-	High_confidence	7	7	28	1.732697	3.986188	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.964286
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	173369520	173369538	173369520	-	High_confidence	2	2	7	0.433174	2.584963	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.571429
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	108125047	108125048	108125047	+	High_confidence	4	4	7	0.433174	2.584963	chr3	108124858	108125222	LTR|ERVL-MaLR|THE1C	+	chr3	108125820	108138610	LINC01215|NR_110028.1	+	108125820,108135143,108136313	108125908,108135350,108138610	0.714286
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	133843378	133843392	133843391	-	High_confidence	414	415	674	41.708489	7.182041	chr5	133843037	133843421	LTR|ERVL-MaLR|MLT1E1A	-	chr5	133755036	133843390	MSTRG.25606.15	-	133755036,133812730	133785268,133843390	0.747774
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr6	2990742	2990761	2990748	-	RAMPAGE_only	17	17	49	3.032219	3.511175	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.918367
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	43120034	43120043	43120042	+	RAMPAGE_only	16	16	31	1.918343	3.831402	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43145152	43156396	FAM183A|ENST00000410048.5	+	43145152,43150760,43152827,43156205	43145297,43150820,43152931,43156396	0.548387
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr16	58862219	58862228	58862227	-	RAMPAGE_only	30	32	55	3.403512	3.875379	chr16	58862059	58862421	LTR|ERVL-MaLR|THE1B	-	chr16	58847806	58880036	AC092378.2|ENST00000562304.1	-	58847806,58879878	58848153,58880036	0.909091
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	129488823	129488857	129488856	+	High_confidence	20	20	50	3.094102	3.726370	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	205983773	205983774	205983773	+	RAMPAGE_only	8	8	8	0.495056	3.000000	chr2	205983451	205984057	LTR|ERV1|LTR71B	-	chr2	206159584	206162928	EEF1B2|ENST00000236957.9	+	206159584,206159958,206160587,206161345,206162037,206162488,206162728	206159684,206160059,206160710,206161472,206162104,206162614,206162928	0.875000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr14	88831392	88831393	88831392	+	RAMPAGE_only	178	180	183	11.324412	5.940906	chr14	88831031	88831570	LTR|ERV1|MER66C	+	chr14	88824738	88877956	TTC8|ENST00000554686.5	+	88824738,88839451,88840864,88841036,88843805,88852970,88857189,88861221,88870058,88871548,88872329,88877293	88824821,88839572,88840928,88841196,88843850,88853056,88857277,88861332,88870198,88871723,88872452,88877956	0.814208
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	129489123	129489126	129489125	+	High_confidence	5	12	17	1.051995	3.155639	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.705882
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr6	32255825	32255844	32255843	+	High_confidence	4	4	8	0.495056	2.807355	chr6	32255571	32255986	LINE|L1|L1PA12	-	chr6	32255720	32390774	HCG23|ENST00000646550.1	+	32255720,32365779,32390213	32255998,32365839,32390774	0.750000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	22082522	22082524	22082522	-	RAMPAGE_only	3	5	8	0.495056	2.500000	chr12	22082443	22082846	LTR|ERVL|LTR16A	+	chr12	22063772	22070613	ST8SIA1|ENST00000536535.1	-	22063772,22066344,22068862,22070571	22063927,22066435,22069020,22070613	0.750000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr10	120453773	120453800	120453773	+	RAMPAGE_only	2	3	9	0.556938	2.725481	chr10	120453802	120454136	LTR|ERVL-MaLR|MLT1K	+	chr10	120456186	120589487	MSTRG.4304.1	+	120456186,120503817,120513910,120518832,120521005,120575130,120589302	120457361,120503926,120514001,120518896,120521095,120575301,120589487	0.666667
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	3536827	3536899	3536845	-	High_confidence	11	11	56	3.465394	4.728339	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.875000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	93591277	93591394	93591277	+	High_confidence	44	45	293	18.131435	5.517253	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591103	93816299	MSTRG.28830.1	+	93591103,93807203	93591771,93816299	0.863481
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	23951339	23951366	23951355	+	High_confidence	19	20	82	5.074327	5.309507	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.817073
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr14	100897920	100897921	100897920	+	High_confidence	18	18	18	1.113877	3.127987	chr14	100897872	100897994	LINE|L1|L1ME5	+	chr14	100897948	100928615	MEG8|ENST00000553465.5	+	100897948,100898956,100906097,100906935,100910232,100913431,100928098	100898053,100899085,100906163,100907132,100910304,100913521,100928615	0.500000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr19	12681156	12681188	12681156	-	High_confidence	4	4	18	1.113877	3.197160	chr19	12680833	12681131	SINE|Alu|AluSx3	-	chr19	12679624	12681161	DHPS|ENST00000599481.1	-	12679624,12679800,12680195,12681032	12679719,12679922,12680325,12681161	0.777778
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr13	30257824	30257871	30257824	-	RAMPAGE_only	7	10	34	2.103989	4.381580	chr13	30257280	30258056	LINE|RTE-BovB|MamRTE1	-	chr13	30208479	30307026	KATNAL1|ENST00000380617.7	-	30208479,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30306939	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307026	0.617647
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr15	22758428	22758439	22758428	+	High_confidence	7	7	20	1.237641	3.181366	chr15	22758208	22758505	SINE|Alu|AluYm1	+	chr15	22758492	22764516	AC138649.1|ENST00000618814.1	+	22758492,22758818,22764223	22758525,22758921,22764516	0.700000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr6	140898419	140898430	140898421	-	RAMPAGE_only	38	71	153	9.467951	5.872987	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140852924	AL035446.1|ENST00000455011.1	-	140845957,140852818	140846304,140852924	0.620915
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	149829044	149829086	149829063	+	High_confidence	88	88	298	18.440845	6.208077	chr2	149828748	149829430	LTR|ERVL-MaLR|MLT1E1A	+	chr2	149829061	149879255	MSTRG.18308.2	+	149829061,149847908,149879078	149829363,149848011,149879255	0.550336
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	12927733	12927756	12927733	+	High_confidence	31	32	133	8.230310	6.008272	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.631579
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	169812897	169812904	169812903	-	High_confidence	62	62	91	5.631265	4.018798	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.901099
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	43120089	43120148	43120147	+	RAMPAGE_only	18	24	99	6.126321	5.611496	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43145152	43156396	FAM183A|ENST00000410048.5	+	43145152,43150760,43152827,43156205	43145297,43150820,43152931,43156396	0.777778
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	140700445	140700452	140700445	+	High_confidence	1440	1619	3246	200.869071	4.988822	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.983364
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	85663581	85663604	85663602	+	High_confidence	6	9	18	1.113877	3.725481	chr5	85657593	85663641	LINE|L1|L1PA2	-	chr5	85663231	85664684	AC010595.1|ENST00000507387.1	+	85663231	85664684	0.777778
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr19	38631941	38632012	38632011	+	High_confidence	13	13	39	2.413399	4.083068	chr19	38631138	38632089	LTR|ERVK|LTR5_Hs	-	chr19	38632025	38636924	EIF3K|ENST00000590134.1	+	38632025,38632600,38634992,38636888	38632496,38632678,38635118,38636924	0.794872
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	123560717	123560718	123560717	-	RAMPAGE_only	19	21	28	1.732697	4.253434	chr7	123560505	123560875	LTR|ERVL-MaLR|MLT1A	-	chr7	123541028	123558255	NDUFA5|ENST00000355749.6	-	123541028,123545610,123550469,123557403,123557774	123542220,123545676,123550586,123557448,123558255	0.964286
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr15	80059908	80059933	80059918	+	High_confidence	30	37	87	5.383737	4.737078	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.919540
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	15883052	15883077	15883076	+	RAMPAGE_only	8	8	14	0.866348	3.182006	chr9	15883037	15883358	SINE|Alu|AluJr	-	chr9	15845638	15971897	CCDC171|ENST00000470191.5	+	15845638,15846701,15848892,15874531,15920269,15971608	15845701,15846847,15848947,15874663,15920422,15971897	0.642857
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr20	46363941	46363984	46363963	-	High_confidence	8	8	20	1.237641	3.270951	chr20	46363820	46363964	LINE|L2|L2a	+	chr20	46352149	46364381	SLC35C2|ENST00000481809.1	-	46352149,46354881,46355072,46355801,46356573,46357622,46358386,46364370	46352226,46354965,46355178,46355874,46356637,46357702,46358763,46364381	0.550000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	75324450	75324467	75324454	-	High_confidence	8	8	16	0.990112	3.323231	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.500000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	95513038	95513039	95513038	+	RAMPAGE_only	13	13	13	0.804466	2.931209	chr7	95512840	95513192	LTR|ERVL-MaLR|MLT1D	+	chr7	95485900	95528801	ASB4|ENST00000428113.5	+	95485900,95495757,95527812	95486158,95496057,95528801	0.538462
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	17891442	17891446	17891442	-	High_confidence	33	38	58	3.589158	4.946411	chr8	17891176	17891626	LTR|ERVL-MaLR|MLT1C	-	chr8	17864583	17891809	FGL1|ENST00000518650.5	-	17864583,17868547,17868915,17874018,17874361,17881998,17885491,17891680	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891809	0.775862
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr20	34546843	34546872	34546871	+	High_confidence	38	43	73	4.517388	5.084272	chr20	34546707	34546884	LTR|ERVL-MaLR|MLT1J	-	chr20	34546883	34560345	MAP1LC3A|NM_181509.2	+	34546883,34549904,34559207,34559346,34559735	34546916,34550029,34559263,34559453,34560345	0.794521
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	96934464	96934479	96934464	+	High_confidence	4	6	13	0.804466	2.623517	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.769231
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	2727243	2727254	2727253	+	High_confidence	7	7	16	0.990112	3.625000	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.687500
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr17	51153837	51153853	51153852	+	High_confidence	23	23	51	3.155984	4.566418	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51153664	51161898	NME1|ENST00000013034.3	+	51153664,51154224,51155650,51159979,51161159,51161727	51153724,51154444,51155780,51160081,51161272,51161898	0.588235
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr14	46064150	46064162	46064150	+	High_confidence	15	15	25	1.547051	3.923856	chr14	46063782	46064404	LTR|ERV1|LTR9	-	chr14	46064158	46501903	LINC00871|NR_102701.1	+	46064158,46210823,46211746,46438180,46449907,46501306	46064216,46210939,46211804,46438250,46449954,46501903	0.520000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	6673446	6673447	6673446	+	High_confidence	94	94	96	5.940675	4.880058	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	0.979167
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	116648864	116648893	116648864	-	RAMPAGE_only	7	8	24	1.485169	2.636842	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr21	38121739	38121742	38121741	+	High_confidence	4	7	9	0.556938	2.725481	chr21	38121639	38121787	SINE|Alu|AluSp	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	22428831	22428871	22428870	+	High_confidence	4	5	16	0.990112	2.973557	chr1	22428699	22428944	LTR|ERVL-MaLR|MLT1J	+	chr1	22428837	22511763	ZBTB40|ENST00000650433.1	+	22428837,22489879,22491399,22506048,22508000,22508529,22509099,22511178,22511675	22429014,22490645,22491533,22506241,22508137,22508731,22509233,22511347,22511763	0.812500
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr6	79631256	79631303	79631278	+	High_confidence	49	50	227	14.047221	5.478456	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.991189
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	73736756	73736757	73736756	-	High_confidence	10	10	10	0.618820	2.721928	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73729889	73737335	MSTRG.17683.5	-	73729889,73730559,73732162,73734428,73737301	73730029,73730736,73732285,73734588,73737335	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr17	41871736	41871748	41871747	-	RAMPAGE_only	4	5	12	0.742584	2.663533	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.750000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	140267727	140267769	140267727	+	RAMPAGE_only	76	94	483	29.889021	5.367897	chr4	140267433	140267902	LTR|ERVL|LTR33A_	+	chr4	140262229	140269870	MSTRG.24228.1	+	140262229,140263157,140266960,140267887,140269385	140262365,140263344,140267177,140267981,140269870	0.979296
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr22	26647077	26647078	26647077	+	High_confidence	8	8	8	0.495056	2.500000	chr22	26647119	26647175	SINE|MIR|MIR1_Amn	+	chr22	26647210	26665737	MIAT|ENST00000440347.5	+	26647210,26656031,26663315,26665530	26647340,26656154,26663398,26665737	0.625000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr15	45631147	45631148	45631147	+	High_confidence	7	7	7	0.433174	2.521641	chr15	45630952	45631306	LTR|ERVL-MaLR|THE1A	+	chr15	45631147	45691280	SQOR|ENST00000568606.5	+	45631147,45631926,45658906,45661954,45669927,45673606,45676100,45682477,45688336,45689038,45690972	45631230,45632015,45659157,45662125,45669981,45673801,45676310,45682661,45688404,45689217,45691280	0.857143
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr11	74747201	74747250	74747249	+	RAMPAGE_only	23	23	65	4.022332	5.068007	chr11	74747182	74747456	SINE|Alu|AluJb	-	chr11	74748867	74842413	RNF169|NM_001098638.1	+	74748867,74789625,74810183,74817595,74834675,74835545	74749382,74789699,74810330,74817714,74834775,74842413	0.707692
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr15	65577003	65577241	65577143	+	RAMPAGE_only	6	6	94	5.816911	4.903580	chr15	65577153	65577426	SINE|Alu|AluJr	+	chr15	65530488	65578355	HACD3|NM_016395.2	+	65530488,65551675,65554886,65556738,65558679,65562773,65564214,65570090,65571547,65572234,65576302	65530718,65551718,65554960,65556903,65558731,65562884,65564342,65570203,65571654,65572366,65578355	0.989362
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr18	32637994	32637995	32637994	+	RAMPAGE_only	6	6	8	0.495056	2.500000	chr18	32637813	32638169	LTR|ERVL-MaLR|THE1B	+	chr18	32470287	32745567	AC025887.2|ENST00000646805.1	+	32470287,32517823,32560634,32561412,32737350,32740789,32742851	32470338,32518131,32560964,32561539,32738693,32740926,32745567	0.625000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	93591619	93591658	93591657	+	High_confidence	6	6	15	0.928230	3.189898	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591103	93816299	MSTRG.28830.1	+	93591103,93807203	93591771,93816299	0.800000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr11	4129116	4129136	4129135	+	RAMPAGE_only	9	9	18	1.113877	3.690117	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.944444
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	143039246	143039298	143039266	+	High_confidence	19	21	91	5.631265	5.183019	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.747253
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	11795569	11795571	11795569	+	High_confidence	69	93	112	6.930787	4.802396	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287744.1	+	11795572,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.973214
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	128458087	128458258	128458257	+	High_confidence	36	36	287	17.760143	5.720791	chr3	128458121	128458425	LINE|L2|L2	-	chr3	128457432	128475768	MSTRG.22531.1	+	128457432,128474481	128463727,128475768	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	116724043	116724122	116724121	+	High_confidence	21	24	190	11.757586	5.832739	chr7	116718497	116724489	LINE|L1|L1PA2	-	chr7	116724145	116755414	MET|ENST00000495962.1	+	116724145,116724771,116731667,116739949,116740851,116755354	116724249,116724847,116731859,116740084,116741025,116755414	0.715789
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	15236507	15236525	15236515	+	RAMPAGE_only	13	14	42	2.599045	3.964361	chr1	15236272	15236744	LTR|ERVL-MaLR|MLT1K	+	chr1	15247271	15398126	FHAD1|ENST00000358897.8	+	15247271,15251770,15272322,15289398,15296683,15301204,15308612,15313056,15316377,15317823,15324451,15327058,15328276,15329345,15341735,15345082,15345415,15349041,15352876,15358109,15360477,15362641,15365826,15367462,15369369,15374501,15375602,15380700,15381230,15382027,15397296	15247395,15251877,15272529,15289666,15296793,15301441,15308736,15313187,15316467,15317928,15324559,15327142,15328429,15329541,15341893,15345190,15345523,15349149,15352984,15358283,15360703,15362726,15365933,15367622,15369502,15374631,15375730,15380796,15381451,15382193,15398126	0.666667
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	75278812	75278825	75278812	-	High_confidence	2	3	7	0.433174	2.521641	chr8	75278367	75284402	LINE|L1|L1PA4	+	chr8	75223768	75278497	CASC9|ENST00000521147.1	-	75223768,75278356	75224358,75278497	0.571429
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	5525287	5525327	5525326	+	High_confidence	403	406	1741	107.736615	6.837767	chr4	5525282	5525571	LTR|ERV1|MER31-int	-	chr4	5525389	5527800	LINC01587|ENST00000505296.1	+	5525389,5526194,5527387	5525496,5526333,5527800	0.893739
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	194486599	194486615	194486599	-	High_confidence	3	3	11	0.680702	2.663533	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402688	194486659	MSTRG.23158.6	-	194402688,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194486659	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	53034027	53034028	53034027	+	RAMPAGE_only	6	6	9	0.556938	2.947703	chr12	53034069	53034237	DNA|hAT-Charlie|MER20B	+	chr12	53037725	53040352	EIF4B|ENST00000549592.1	+	53037725,53039629,53040142	53039343,53039702,53040352	0.666667
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	216107563	216107592	216107591	+	High_confidence	6	6	18	1.113877	3.239098	chr2	216107336	216107624	SINE|Alu|AluJo	+	chr2	216107463	216206303	XRCC5|ENST00000392133.7	+	216107463,216107652,216109090,216113015,216116658,216117745,216119042,216122061,216125916,216127535,216130874,216132324,216137087,216138088,216141185,216148082,216160067,216161978,216190224,216192638,216194918,216204321,216205187	216107532,216107698,216109457,216113129,216116842,216117794,216119165,216122253,216126031,216127674,216130987,216132387,216137225,216138179,216141319,216148276,216160161,216162048,216190334,216192735,216194986,216204396,216206303	0.888889
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr15	51603692	51603702	51603701	-	High_confidence	21	23	36	2.227753	4.436007	chr15	51603584	51603891	SINE|Alu|AluY	+	chr15	51457371	51603701	MSTRG.10319.11	-	51457371,51458505,51458708,51463378,51464674,51465565,51466183,51471222,51474343,51476588,51478270,51479947,51480541,51486072,51487953,51488547,51491577,51495023,51498551,51502805,51507133,51514441,51517077,51535662,51536165,51537487,51538212,51542332,51545582,51547229,51563380,51564124,51565087,51568486,51576055,51603604	51457466,51458627,51458795,51463496,51464876,51465651,51466311,51471401,51474592,51476716,51478347,51480139,51481623,51486337,51488119,51488645,51491747,51495134,51500231,51503033,51507253,51514559,51517167,51535784,51536862,51537759,51538452,51542507,51545766,51547408,51563447,51564260,51565166,51568558,51576181,51603701	0.805556
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	135965723	135965762	135965723	+	High_confidence	9	11	42	2.599045	3.806198	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.952381
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	66926440	66926482	66926450	-	High_confidence	16	17	62	3.836686	3.862829	chr8	66926412	66926708	SINE|Alu|AluY	-	chr8	66922017	66926398	SNHG6|ENST00000520619.1	-	66922017,66922323,66922613,66926197	66922114,66922392,66922725,66926398	0.951613
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	82025602	82025640	82025639	+	RAMPAGE_only	15	15	44	2.722809	4.609534	chr9	82025607	82025870	SINE|Alu|AluSx	-	chr9	82031526	82453803	MSTRG.31457.2	+	82031526,82273406,82277048,82281581,82428198,82451602,82453637	82032490,82273481,82277162,82281650,82428293,82451729,82453803	0.568182
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	6590246	6590279	6590248	+	High_confidence	9	12	26	1.608933	3.430457	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.576923
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr16	4894878	4894883	4894878	-	RAMPAGE_only	9	9	26	1.608933	3.269275	chr16	4894801	4895209	LTR|ERVL-MaLR|MLT1K	+	chr16	4882822	4937064	PPL|ENST00000590782.6	-	4882822,4887134,4888101,4888977,4890183,4890727,4891810,4892034,4893212,4893540,4894466,4895260,4895593,4897674,4899012,4899222,4900829,4900963,4902405,4903885,4910849,4936983	4886047,4887227,4888218,4889061,4890334,4890921,4891949,4892213,4893370,4893638,4894618,4895407,4895716,4897770,4899120,4899384,4900865,4901089,4902526,4904040,4910949,4937064	0.730769
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	98733186	98733222	98733197	+	High_confidence	5	6	32	1.980225	4.413910	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.812500
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr6	33843999	33844019	33844003	+	High_confidence	200	202	425	26.299863	5.324269	chr6	33843810	33844169	LTR|ERVL-MaLR|THE1B	+	chr6	33843985	33849392	MSTRG.26749.3	+	33843985,33845608	33844085,33849392	0.945882
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr6	63817302	63817334	63817329	+	RAMPAGE_only	21	35	69	4.269860	5.063032	chr6	63817219	63817643	LTR|ERVL|LTR33A	-	chr6	63806835	63822642	AL354719.2|ENST00000429530.1	+	63806835,63821239	63806886,63822642	0.898551
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	57978399	57978427	57978399	+	High_confidence	5	6	18	1.113877	3.219528	chr8	57978204	57978556	LTR|ERVL-MaLR|THE1A	+	chr8	57978357	57984126	LINC01602|ENST00000522992.1	+	57978357,57980893,57982265	57978484,57981014,57984126	0.944444
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	11795667	11795668	11795667	+	High_confidence	9	9	9	0.556938	2.503258	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	244087305	244087306	244087305	+	High_confidence	472	483	629	38.923797	6.503670	chr1	244087112	244087564	LTR|ERVL-MaLR|MLT1C	+	chr1	244087095	244093591	MSTRG.2987.2	+	244087095,244093285	244088040,244093591	0.804452
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr10	37856881	37856895	37856881	-	High_confidence	5	5	11	0.680702	2.921928	chr10	37856833	37856954	SINE|MIR|MIR1_Amn	+	chr10	37776525	37857197	ZNF248|ENST00000615949.6	-	37776525,37833024,37837616,37837984,37856295,37856434,37857184	37776575,37833116,37837712,37838111,37856337,37856532,37857197	0.636364
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr21	38121347	38121362	38121347	-	High_confidence	24	28	66	4.084214	4.594768	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	37623558	38121345	KCNJ6|ENST00000645093.1	-	37623558,37714210,37840657,38120306,38121127	37625484,37715131,37840709,38120408,38121345	0.696970
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	151958814	151958834	151958833	+	High_confidence	8	8	16	0.990112	3.625000	chr5	151958688	151959037	LTR|ERVL-MaLR|THE1B	+	chr5	151958897	152270445	LINC01933|ENST00000524034.5	+	151958897,152267264,152270194	151958954,152267355,152270445	0.562500
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr20	37298760	37298761	37298760	+	RAMPAGE_only	10	10	10	0.618820	2.921928	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	102313247	102313350	102313292	+	RAMPAGE_only	12	13	87	5.383737	5.245326	chr12	102307781	102313768	LINE|L1|L1PA2	-	chr12	102304354	102463491	LINC02456|ENST00000635615.1	+	102304354,102304631,102315310,102348882,102423070,102462727	102304448,102304756,102315490,102348932,102423180,102463491	0.574713
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr17	59619874	59619923	59619894	+	High_confidence	478	610	2203	136.326113	6.187193	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.952338
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr19	9140417	9140437	9140427	+	High_confidence	17	20	74	4.579270	4.808071	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.581081
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr20	32537176	32537215	32537178	-	High_confidence	11	19	45	2.784691	3.287430	chr20	32537119	32537267	SINE|MIR|MIRb	-	chr20	32464779	32536397	NOL4L|ENST00000375678.7	-	32464779,32474600,32511346,32520810,32527757,32532316,32533375,32535440	32465134,32474742,32511456,32520922,32527913,32532416,32533485,32536397	0.911111
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	168354463	168354505	168354498	+	High_confidence	3	3	12	0.742584	2.625815	chr1	168348862	168354879	LINE|L1|L1PA2	-	chr1	168354403	168581409	MSTRG.2260.2	+	168354403,168379608,168559605,168567929,168576261,168580062,168581051	168354910,168379782,168567876,168575868,168576698,168580177,168581409	0.583333
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	30807882	30807883	30807882	+	High_confidence	30	30	40	2.475281	4.124024	chr7	30807526	30807994	LTR|ERV1|LTR2	+	chr7	30807890	30892386	MSTRG.28216.9	+	30807890,30828678,30836657,30839199,30840759,30850453,30852215,30853393,30859256,30872242,30875494,30882180,30882920,30891956	30808247,30828737,30836764,30839316,30840848,30850555,30852279,30853459,30859324,30872306,30875656,30882361,30882993,30892386	0.950000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	74568841	74568845	74568841	+	RAMPAGE_only	6	6	14	0.866348	2.719295	chr7	74568749	74569022	LINE|L2|L2	-	chr7	74600959	74602583	GTF2IRD1|ENST00000486086.1	+	74600959,74602364	74601180,74602583	0.500000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr16	30354709	30354710	30354709	-	High_confidence	6	7	8	0.495056	2.807355	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.875000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	12110981	12110983	12110981	+	High_confidence	185	232	277	17.141322	4.877797	chr12	12110866	12110982	SINE|Alu|AluJb	+	chr12	12111162	12111489	AC007537.1|ENST00000539347.1	+	12111162	12111489	0.548736
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	6208681	6208682	6208681	-	High_confidence	43	44	44	2.722809	3.128518	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.954545
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr10	130171600	130171635	130171634	+	RAMPAGE_only	3	3	10	0.618820	2.646439	chr10	130171683	130171980	SINE|Alu|AluJb	+	chr10	130179373	130180382	GLRX3|ENST00000496195.1	+	130179373,130180112	130179420,130180382	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr10	19768125	19768170	19768169	+	RAMPAGE_only	5	6	30	1.856461	4.392127	chr10	19768143	19768495	LTR|ERV1|LTR23	+	chr10	19816238	20289856	PLXDC2|ENST00000377252.4	+	19816238,20001774,20046868,20068169,20143294,20147783,20164467,20176998,20177327,20211668,20217425,20219063,20245344,20279702	19817191,20001986,20047015,20068239,20143417,20147902,20164567,20177094,20177409,20211729,20217576,20219102,20245505,20289856	0.766667
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	39026190	39026199	39026198	+	High_confidence	9	9	19	1.175759	2.905308	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	10973307	10973338	10973335	+	High_confidence	8	9	33	2.042107	4.413910	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.818182
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr10	84279967	84279968	84279967	+	High_confidence	19	19	24	1.485169	3.636842	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279990	84288995	LINC00858|ENST00000437892.1	+	84279990,84288223,84288593	84280065,84288420,84288995	0.541667
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	40453541	40453549	40453546	-	High_confidence	45	45	96	5.940675	5.194643	chr2	40453521	40453703	DNA|hAT-Charlie|MER5B	+	chr2	40430019	40453438	SLC8A1|ENST00000455476.5	-	40430019,40453160	40430304,40453438	0.739583
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr17	28719711	28719712	28719711	+	High_confidence	7	7	9	0.556938	2.725481	chr17	28719632	28719760	SINE|Alu|AluYh3	+	chr17	28719981	28724356	RPL23A|NM_000984.5	+	28719981,28720706,28722722,28723570,28723866	28720030,28720890,28722899,28723640,28724356	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	102431237	102431265	102431247	-	High_confidence	13	14	39	2.413399	3.938496	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.897436
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	27716433	27716434	27716433	+	RAMPAGE_only	4	4	6	0.371292	2.584963	chr12	27716483	27716564	LINE|L2|L2	+	chr12	27710886	27737608	MRPS35|ENST00000542199.1	+	27710886,27714779,27716290,27719807,27724046,27725576,27735446,27737538	27710955,27714820,27716458,27719868,27724186,27725667,27735556,27737608	0.833333
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	164351213	164351241	164351240	-	RAMPAGE_only	14	14	29	1.794579	3.602589	chr4	164350749	164356776	LINE|L1|L1PA2	+	chr4	163526970	164384035	MARCH1|ENST00000514618.5	-	163526970,163545595,163585748,163612270,163613313,163700812,163854020,163988500,164111587,164383869	163529046,163545743,163585929,163613038,163613393,163700863,163854169,163988709,164111662,164384035	0.724138
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	99893444	99893474	99893444	-	High_confidence	8	9	28	1.732697	3.195947	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	133843196	133843202	133843196	-	High_confidence	4	4	10	0.618820	2.721928	chr5	133843037	133843421	LTR|ERVL-MaLR|MLT1E1A	-	chr5	133755036	133843390	MSTRG.25606.15	-	133755036,133812730	133785268,133843390	0.900000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	74423869	74423976	74423975	+	High_confidence	7	8	40	2.475281	3.977567	chr2	74424023	74424113	SINE|MIR|MIR3	+	chr2	74424872	74425755	WDR54|ENST00000482605.1	+	74424872,74425416,74425569	74425237,74425491,74425755	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr22	47631696	47631727	47631707	+	High_confidence	16	16	38	2.351517	4.138830	chr22	47631336	47631805	LTR|ERVL|MLT2B1	-	chr22	47631673	47855600	AL117329.1|ENST00000423737.5	+	47631673,47635179,47686199,47686574,47686802,47687140,47704588,47738433,47854910	47631886,47635353,47686312,47686695,47686938,47687206,47704747,47738576,47855600	0.684211
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr16	89958341	89958355	89958341	+	High_confidence	143	143	293	18.131435	6.557739	chr16	89958222	89958381	LTR|ERVL-MaLR|MLT1K	-	chr16	89958350	89959365	DEF8|ENST00000562044.1	+	89958350,89959013	89958533,89959365	0.815700
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr11	66729235	66729297	66729279	-	High_confidence	12	12	55	3.403512	4.096900	chr11	66729233	66729349	SINE|MIR|MIRb	-	chr11	66715353	66729226	SPTBN2|ENST00000527010.1	-	66715353,66715829,66721083,66728740	66715395,66715981,66721262,66729226	0.945455
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	128104796	128104808	128104807	-	RAMPAGE_only	6	6	13	0.804466	2.688722	chr3	128104760	128104822	LINE|CR1|L3	-	chr3	128081181	128100744	RUVBL1|ENST00000478892.1	-	128081181,128082482,128087705,128097299,128098881,128100594	128081409,128082574,128087844,128097498,128098945,128100744	0.923077
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	100398895	100398898	100398895	+	RAMPAGE_only	40	41	63	3.898568	4.602945	chr12	100398705	100399070	LTR|ERVL-MaLR|THE1B	+	chr12	100357078	100422059	SLC17A8|ENST00000323346.9	+	100357078,100380700,100391000,100393368,100396329,100401776,100402339,100402595,100404037,100412769,100418028,100419814	100357492,100380953,100391119,100393483,100396417,100401863,100402479,100402745,100404170,100412880,100418156,100422059	0.825397
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	216107501	216107502	216107501	+	High_confidence	5	5	8	0.495056	2.521641	chr2	216107336	216107624	SINE|Alu|AluJo	+	chr2	216107463	216206303	XRCC5|ENST00000392133.7	+	216107463,216107652,216109090,216113015,216116658,216117745,216119042,216122061,216125916,216127535,216130874,216132324,216137087,216138088,216141185,216148082,216160067,216161978,216190224,216192638,216194918,216204321,216205187	216107532,216107698,216109457,216113129,216116842,216117794,216119165,216122253,216126031,216127674,216130987,216132387,216137225,216138179,216141319,216148276,216160161,216162048,216190334,216192735,216194986,216204396,216206303	0.875000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr15	66502611	66502741	66502611	-	High_confidence	50	50	452	27.970678	6.383746	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.918142
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	122064308	122064376	122064375	+	RAMPAGE_only	200	204	569	35.210875	6.703824	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.615114
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	39809997	39810034	39810033	-	High_confidence	68	68	226	13.985339	5.945337	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807380	39810058	GLIDR|ENST00000618092.2	-	39807380,39809730	39809633,39810058	0.535398
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	70129294	70129305	70129294	+	RAMPAGE_only	11	12	18	1.113877	3.461320	chr9	70129114	70129476	LTR|ERVL-MaLR|THE1B	+	chr9	70043580	70226970	MAMDC2|ENST00000377182.4	+	70043580,70044583,70108210,70109719,70112994,70126158,70131518,70140144,70143553,70168701,70170478,70218336,70225749,70225967	70044231,70044697,70108482,70109804,70113132,70126415,70131612,70140288,70143819,70168795,70170631,70218596,70225834,70226970	0.833333
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr17	48962377	48962411	48962410	-	RAMPAGE_only	8	8	14	0.866348	2.610577	chr17	48962368	48962666	SINE|Alu|AluSc5	-	chr17	48958555	48968593	GIP|NM_004123.2	-	48958555,48960885,48961726,48964309,48967146,48968516	48958716,48960987,48961819,48964480,48967253,48968593	0.857143
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	53464756	53464804	53464756	+	RAMPAGE_only	2	2	16	0.990112	3.773557	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479821	MSTRG.6825.38	+	53462513,53464759,53467220,53468776,53471637,53479405	53462567,53465973,53467293,53468832,53471807,53479821	0.937500
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	15590772	15590798	15590772	+	High_confidence	6	6	31	1.918343	4.340662	chr2	15590742	15590919	SINE|Alu|AluSc8	-	chr2	15591177	15631111	DDX1|ENST00000381341.6	+	15591177,15591653,15595144,15595489,15596733,15597374,15599668,15602547,15603191,15603813,15604436,15605949,15606149,15607174,15613223,15617243,15618180,15620207,15621064,15623435,15627053,15628444,15628637,15628796,15629601,15629989,15630775	15591286,15591949,15595196,15595553,15596763,15597471,15599716,15602631,15603275,15603890,15604509,15606026,15606264,15607313,15613284,15617342,15618270,15620396,15621116,15623582,15627145,15628517,15628710,15628839,15629697,15630110,15631111	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr17	4143199	4143215	4143199	+	High_confidence	205	213	413	25.557279	5.566533	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.975787
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	4615803	4615872	4615813	-	High_confidence	8	8	45	2.784691	4.880525	chr5	4615428	4621437	LINE|L1|L1PA2	+	chr5	4423676	4615897	MSTRG.24571.1	-	4423676,4481691,4522264,4529961,4615423	4423895,4481755,4522367,4530076,4615897	0.777778
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr10	102449839	102449845	102449839	+	High_confidence	6	6	16	0.990112	3.155639	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr6	37423962	37423997	37423984	+	High_confidence	32	32	111	6.868905	5.472910	chr6	37423607	37424237	LTR|ERV1|LTR9	-	chr6	37423950	37481506	MSTRG.26829.1	+	37423950,37432347,37435623,37443998,37446290,37450250,37451805,37453046,37453239,37458611,37459565,37461548,37461969,37462828,37471020,37471846,37472418,37473469,37474523,37475320,37476125,37477591,37478408,37479146,37480012	37424049,37432459,37435762,37444150,37446449,37450343,37451877,37453141,37453312,37458810,37459684,37461645,37462102,37463008,37471077,37471904,37472487,37473601,37474646,37475412,37476194,37477639,37478521,37479255,37481506	0.738739
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	32669538	32669563	32669562	+	RAMPAGE_only	3	3	10	0.618820	2.725481	chr1	32669609	32669912	SINE|Alu|AluY	+	chr1	32651357	32686211	RBBP4|NM_001135256.1	+	32651357,32651913,32657426,32668224,32668738,32668971,32669230,32669485,32672449,32672641,32672790,32679639	32651432,32652061,32657572,32668398,32668854,32669132,32669357,32669563,32672526,32672699,32672901,32686211	0.900000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr10	120453935	120453943	120453942	+	RAMPAGE_only	8	10	19	1.175759	3.536887	chr10	120453802	120454136	LTR|ERVL-MaLR|MLT1K	+	chr10	120456186	120589487	MSTRG.4304.1	+	120456186,120503817,120513910,120518832,120521005,120575130,120589302	120457361,120503926,120514001,120518896,120521095,120575301,120589487	0.736842
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	139344535	139344548	139344547	+	High_confidence	191	191	573	35.458404	5.540812	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.935428
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr18	7946878	7946898	7946878	+	High_confidence	9	9	19	1.175759	3.503258	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.789474
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr11	123061189	123061328	123061296	-	High_confidence	15	15	151	9.344187	5.472510	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.966887
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr11	72111493	72111497	72111496	-	High_confidence	5	10	14	0.866348	3.026987	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72108817	72111497	ANAPC15|ENST00000538117.5	-	72108817,72109228,72110087,72110543,72111156,72111411	72108875,72109341,72110225,72110603,72111281,72111497	0.500000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr11	44695212	44695251	44695250	-	RAMPAGE_only	8	9	38	2.351517	4.432294	chr11	44695126	44695254	LINE|L1|L1ME3F	-	chr11	44694862	44696301	AC104241.2|ENST00000532748.1	-	44694862,44696220	44695570,44696301	0.684211
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	5526811	5526845	5526842	+	High_confidence	112	158	321	19.864132	5.627831	chr4	5526442	5526894	LTR|ERVL|LTR16A1	+	chr4	5527151	5527801	LINC01587|ENST00000504943.1	+	5527151,5527387	5527261,5527801	0.950156
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr11	72359155	72359217	72359216	-	High_confidence	38	59	285	17.636379	6.624539	chr11	72359191	72359464	LINE|L2|L2c	-	chr11	72294620	72359206	CLPB|ENST00000544382.5	-	72294620,72295491,72301802,72302303,72307198,72308526,72317105,72329706,72358879,72359137	72294693,72295648,72301964,72302348,72307254,72308604,72317220,72329804,72359008,72359206	0.933333
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	87040212	87040223	87040212	-	High_confidence	35	35	85	5.259973	5.217180	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86880076	87040231	MSTRG.28773.4	-	86880076,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040231	0.964706
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	134485387	134485475	134485387	-	High_confidence	12	13	116	7.178316	5.517663	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.922414
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	5525168	5525182	5525171	+	High_confidence	8	8	16	0.990112	3.202820	chr4	5524701	5525232	LTR|ERV1|MER66C	-	chr4	5525155	5527801	LINC01587|ENST00000623565.3	+	5525155,5526215,5527387	5525496,5526333,5527801	0.937500
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	80770324	80770393	80770347	-	High_confidence	48	52	270	16.708148	6.208896	chr3	80769735	80770387	LTR|ERV1|LTR1A1	-	chr3	80520473	80770370	MSTRG.22180.1	-	80520473,80631230,80633814,80761457,80769758	80520543,80631287,80633971,80761573,80770370	0.892593
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	103855756	103855783	103855762	-	RAMPAGE_only	4	4	16	0.990112	3.077820	chr7	103855587	103855993	LTR|ERVL-MaLR|MLT1C	-	chr7	103471783	103989516	RELN|ENST00000428762.5	-	103471783,103478388,103482872,103483652,103486196,103489741,103490667,103491952,103495722,103496525,103497819,103498076,103500744,103503015,103510850,103515184,103519322,103522021,103523390,103535315,103539077,103540196,103542730,103545123,103551066,103553460,103553659,103556976,103557964,103561531,103561812,103565277,103566223,103566600,103572183,103574091,103575547,103589595,103593681,103594320,103596455,103603303,103604345,103610694,103611610,103629939,103635424,103636234,103640542,103650273,103651660,103652550,103654092,103661375,103682115,103697852,103700909,103723139,103728110,103749425,103753181,103776556,103833536,103917074,103989130	103472908,103478394,103482971,103483850,103486416,103489899,103490829,103492026,103495898,103496768,103497926,103498252,103500922,103503230,103511005,103515441,103519516,103522199,103523531,103535484,103539327,103540455,103542878,103545344,103551296,103553563,103553831,103557159,103558049,103561709,103561953,103565551,103566412,103566759,103572260,103574299,103575705,103589828,103593882,103594492,103596661,103603490,103604483,103610807,103611803,103630176,103635586,103636468,103640609,103650383,103651789,103652759,103654205,103661527,103682261,103698093,103701006,103723191,103728207,103749504,103753214,103776627,103833672,103917185,103989516	0.750000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr6	34998796	34998833	34998796	+	High_confidence	5	5	17	1.051995	3.327820	chr6	34998835	34999233	LTR|ERV1|HERVE_a-int	+	chr6	34998090	35091413	MSTRG.26754.4	+	34998090,35017472,35054098,35060146,35078557,35079515,35079820,35080993,35082690,35083154,35083416,35084120,35085765,35086951,35088605	34999101,35018059,35054165,35060253,35078656,35079668,35079928,35081158,35082816,35083226,35083503,35084258,35085936,35087049,35091413	0.705882
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	32927967	32927984	32927976	+	High_confidence	532	591	1120	69.307874	7.059825	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927971	33051929	MSTRG.29982.2	+	32927971,33041634,33044366	32928093,33041771,33051929	0.899107
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	29970323	29970359	29970358	-	High_confidence	26	26	68	4.207978	4.770054	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	0.852941
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	105600891	105600892	105600891	-	High_confidence	4	4	7	0.433174	2.807355	chr7	105600681	105601093	LTR|ERVL-MaLR|THE1D	-	chr7	105567101	105600875	EFCAB10|ENST00000490493.1	-	105567101,105569202,105569406,105591304,105600763	105567490,105569290,105569571,105591391,105600875	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr19	3062922	3062983	3062982	-	High_confidence	12	12	47	2.908455	4.058691	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.978723
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr17	77390271	77390291	77390290	+	RAMPAGE_only	18	18	35	2.165871	3.289833	chr17	77390212	77390366	SINE|Alu|AluYc	+	chr17	77400557	77402579	SEPT9|ENST00000590825.1	+	77400557,77402058	77400590,77402579	0.514286
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	1744890	1744918	1744890	-	High_confidence	3	3	9	0.556938	2.725481	chr2	1744859	1744905	SINE|MIR|MIR	-	chr2	1680252	1744852	PXDN|ENST00000485177.1	-	1680252,1683655,1684079,1687631,1691927,1693062,1744803	1680362,1683727,1684151,1687703,1691999,1693134,1744852	0.888889
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	140087937	140087960	140087953	-	RAMPAGE_only	10	10	34	2.103989	4.476410	chr8	140086947	140088309	LINE|L2|L2b	+	chr8	139732161	140082153	TRAPPC9|ENST00000523777.5	-	139732161,139885878,139910146,139988725,140023936,140081988	139732202,139885969,139910300,139988836,140024079,140082153	0.647059
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	9986881	9986905	9986904	+	High_confidence	45	49	155	9.591715	6.019876	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.548387
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr11	94237802	94237854	94237853	+	High_confidence	5	5	21	1.299523	3.784184	chr11	94232524	94238528	LINE|L1|L1PA2	-	chr11	94238149	94279029	AP002784.1|ENST00000506309.6	+	94238149,94276956,94278764	94238277,94277109,94279029	0.904762
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr3	183115967	183116042	183116041	-	High_confidence	26	26	134	8.292192	5.031055	chr3	183115868	183116225	LTR|ERV1|MER51E	-	chr3	183071045	183116075	MSTRG.23029.12	-	183071045,183072365,183086692,183092408,183094558,183115473	183071357,183072487,183086788,183092545,183094605,183116075	0.985075
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	83911140	83911141	83911140	+	RAMPAGE_only	30	30	35	2.165871	4.513646	chr8	83911058	83911187	LTR|ERV1|LTR38A1	+	chr8	83912712	83995256	MSTRG.30374.1	+	83912712,83967327,83979924	83912835,83978766,83995256	0.657143
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr20	18794077	18794086	18794077	+	High_confidence	45	45	111	6.868905	4.865695	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.981982
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	100398809	100398853	100398817	+	RAMPAGE_only	7	7	45	2.784691	3.992856	chr12	100398705	100399070	LTR|ERVL-MaLR|THE1B	+	chr12	100357078	100422059	SLC17A8|ENST00000323346.9	+	100357078,100380700,100391000,100393368,100396329,100401776,100402339,100402595,100404037,100412769,100418028,100419814	100357492,100380953,100391119,100393483,100396417,100401863,100402479,100402745,100404170,100412880,100418156,100422059	0.755556
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr9	39809858	39809865	39809858	-	High_confidence	26	29	39	2.413399	3.658532	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803190	39810063	MSTRG.31251.3	-	39803190,39809485,39809730	39803859,39809615,39810063	0.923077
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	80627044	80627274	80627117	-	RAMPAGE_only	33	39	472	29.208318	4.173000	chr5	80627115	80627359	LINE|L1|HAL1	-	chr5	80626225	80654981	DHFR|NR_110936.1	-	80626225,80633876,80649388,80654403	80629165,80633992,80649494,80654981	0.995763
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr14	100929920	100929921	100929920	+	RAMPAGE_only	37	46	46	2.846573	4.683797	chr14	100929864	100929989	LINE|L1|L1ME5	+	chr14	100897948	100947076	MSTRG.9562.62	+	100897948,100898956,100906097,100906935,100910232,100913431,100928098,100938879,100940364,100942761,100944808,100947033	100898053,100899085,100906163,100907132,100910304,100913521,100937488,100938956,100940450,100942838,100944925,100947076	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	51418140	51418158	51418157	+	RAMPAGE_only	15	15	49	3.032219	5.001629	chr12	51418065	51418366	LINE|CR1|L3	+	chr12	51420099	51453586	SLC4A8|ENST00000548352.5	+	51420099,51440707,51450875,51452123,51453538	51420208,51440789,51451022,51452259,51453586	0.612245
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr19	48868613	48868666	48868630	-	High_confidence	42	43	271	16.770030	6.479071	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868632	PLEKHA4|ENST00000263265.10	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868632	0.996310
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr15	34588450	34588453	34588450	-	RAMPAGE_only	36	57	91	5.631265	5.247320	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34379067	34583634	MSTRG.9973.2	-	34379067,34381700,34381967,34382150,34382385,34382796,34383440,34383745,34383960,34385047,34385253,34385426,34385739,34386624,34389643,34391122,34391352,34398633,34399154,34400711,34404916,34406673,34407523,34551137,34552894,34553744,34583515	34381613,34381856,34382068,34382251,34382529,34383053,34383528,34383853,34384047,34385157,34385338,34385474,34385778,34387952,34389768,34391265,34391426,34398729,34399203,34400759,34405055,34406870,34407735,34551276,34553091,34553956,34583634	0.824176
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	99892034	99892057	99892056	-	RAMPAGE_only	84	84	128	7.920900	4.762615	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.968750
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	6200576	6200658	6200576	-	High_confidence	18	18	95	5.878793	3.186098	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.989474
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	172450757	172450789	172450759	+	High_confidence	3	5	15	0.928230	3.373557	chr1	172450700	172450766	LINE|L1|L1M4c	+	chr1	172451040	172468827	C1orf105|ENST00000367726.1	+	172451040,172462177,172465298,172468448	172451117,172462245,172465363,172468827	0.800000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr6	43013392	43013393	43013392	-	High_confidence	93	93	106	6.559495	5.530012	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.990566
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	107529485	107529512	107529489	+	High_confidence	20	26	126	7.797136	5.869165	chr2	107529145	107529729	LTR|ERV1|LTR9	-	chr2	107529497	107556326	MSTRG.17994.2	+	107529497,107555132	107531779,107556326	0.587302
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	134432378	134432451	134432378	-	High_confidence	43	51	227	14.047221	5.236974	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.748899
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	99410041	99410068	99410041	+	RAMPAGE_only	5	5	20	1.237641	2.865957	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	1.000000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	16097669	16097672	16097669	-	RAMPAGE_only	5	5	14	0.866348	2.873141	chr2	16097439	16097791	LTR|ERVL-MaLR|THE1B	-	chr2	16096425	16105841	MSTRG.17021.2	-	16096425,16105694	16105543,16105841	0.714286
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr11	66729343	66729350	66729343	-	High_confidence	5	5	15	0.928230	2.896292	chr11	66729233	66729349	SINE|MIR|MIRb	-	chr11	66715353	66729226	SPTBN2|ENST00000527010.1	-	66715353,66715829,66721083,66728740	66715395,66715981,66721262,66729226	0.866667
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr2	241808790	241808828	241808813	+	High_confidence	6	6	24	1.485169	3.788755	chr2	241808863	241808907	LINE|L1|L1MEj	+	chr2	241808824	241817413	NEU4|ENST00000407683.5	+	241808824,241814481,241814891,241816050	241809274,241814685,241815147,241817413	0.875000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	61646912	61646916	61646915	+	RAMPAGE_only	9	9	15	0.928230	3.467720	chr4	61641294	61647303	LINE|L1|L1PA3	-	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.600000
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr5	116085461	116085480	116085479	+	High_confidence	3	4	13	0.804466	3.085055	chr5	116085484	116085794	DNA|hAT-Charlie|MER113	+	chr5	116085473	116292657	COMMD10|ENST00000515539.5	+	116085473,116087496,116091078,116092544,116134067,116291516,116292450	116085606,116087587,116091189,116092700,116134178,116291576,116292657	0.692308
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr7	93148731	93148740	93148739	-	High_confidence	5	7	12	0.742584	3.095795	chr7	93148692	93148966	LTR|ERVL-MaLR|MLT1B	+	chr7	93130053	93148388	SAMD9L|NM_152703.3	-	93130053,93144731,93145384,93146882,93148193	93135991,93144833,93146040,93147146,93148388	0.583333
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr1	153967482	153967501	153967486	+	High_confidence	14	21	64	3.960450	4.604934	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.562500
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr15	48020481	48020482	48020481	+	High_confidence	57	66	68	4.207978	5.187889	chr15	48020292	48020661	LTR|ERVL-MaLR|THE1D	+	chr15	48020502	48050244	MSTRG.10236.2	+	48020502,48048789	48020578,48050244	0.544118
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr19	17336685	17336727	17336685	+	High_confidence	9	9	24	1.485169	3.882045	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.833333
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr8	2726956	2726963	2726962	+	High_confidence	13	13	29	1.794579	3.967720	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.758621
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr12	86384071	86384110	86384071	+	High_confidence	131	154	283	17.512615	6.385081	chr12	86383894	86384235	LTR|ERVL-MaLR|THE1B	+	chr12	86384050	86474919	MSTRG.7220.2	+	86384050,86462332,86469467,86470238,86470894,86472974	86384152,86462804,86469577,86470474,86471068,86474919	0.812721
SK_N_DZ_treated_with_dimethyl_sulfoxide	chr4	61646802	61646821	61646817	+	RAMPAGE_only	6	7	24	1.485169	3.340200	chr4	61641294	61647303	LINE|L1|L1PA3	-	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.833333
smooth_muscle_cell_derived_from_H9	chr11	67620130	67620157	67620130	+	High_confidence	5	5	13	0.454458	2.855389	chr11	67618852	67620425	LTR|ERV1|LTR12C	+	chr11	67619993	67627473	MSTRG.9564.1	+	67619993,67626053	67620536,67627473	0.923077
smooth_muscle_cell_derived_from_H9	chr17	47067498	47067518	47067498	-	High_confidence	220	248	845	29.539789	5.829410	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.862722
smooth_muscle_cell_derived_from_H9	chr3	37058852	37058884	37058883	-	RAMPAGE_only	5	7	30	1.048750	3.553090	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.900000
smooth_muscle_cell_derived_from_H9	chr1	28617958	28617971	28617958	-	RAMPAGE_only	4	4	8	0.279667	2.521641	chr1	28617880	28617910	SINE|MIR|MIR	-	chr1	28603100	28643005	TAF12|ENST00000263974.4	-	28603100,28605371,28613246,28617952,28621913,28642654	28603574,28605460,28613361,28618030,28622165,28643005	0.875000
smooth_muscle_cell_derived_from_H9	chr2	62030101	62030122	62030113	+	RAMPAGE_only	11	11	28	0.978833	3.454168	chr2	62029832	62030441	LTR|ERV1|MER39B	-	chr2	61905646	62136247	COMMD1|ENST00000311832.5	+	61905646,62000700,62135830	61905858,62000982,62136247	0.750000
smooth_muscle_cell_derived_from_H9	chr10	103746799	103746827	103746799	+	High_confidence	6	6	16	0.559333	3.773557	chr10	103746609	103747070	LINE|L2|L2b	+	chr10	103746792	103754466	SH3PXD2A-AS1|ENST00000625265.1	+	103746792,103749781,103753843	103747096,103749920,103754466	0.750000
smooth_muscle_cell_derived_from_H9	chr10	103181328	103181329	103181328	-	High_confidence	16	16	16	0.559333	3.452820	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103169283	103181320	NT5C2|ENST00000467380.1	-	103169283,103174857,103181184	103169449,103174982,103181320	0.562500
smooth_muscle_cell_derived_from_H9	chr15	53540743	53540768	53540743	-	High_confidence	6	6	16	0.559333	3.077820	chr15	53540633	53546677	LINE|L1|L1PA2	+	chr15	53517351	53540691	MSTRG.19364.6	-	53517351,53523217,53540661	53517754,53523322,53540691	0.625000
smooth_muscle_cell_derived_from_H9	chr11	36500430	36500431	36500430	-	RAMPAGE_only	13	13	16	0.559333	2.973557	chr11	36500005	36500736	LINE|L2|L2a	-	chr11	36489172	36510256	TRAF6|ENST00000348124.5	-	36489172,36492550,36494975,36497107,36498489,36501219,36501718,36510047	36490650,36492628,36495047,36497266,36498640,36501537,36501811,36510256	0.500000
smooth_muscle_cell_derived_from_H9	chr3	110833946	110834139	110834041	-	RAMPAGE_only	6	11	161	5.628291	5.482514	chr3	110830864	110836421	LINE|L1|L1PA7	-	chr3	110819784	110893476	MSTRG.39434.5	-	110819784,110889425,110893137	110889209,110892603,110893476	1.000000
smooth_muscle_cell_derived_from_H9	chr6	114010195	114010213	114010195	-	RAMPAGE_only	2	2	9	0.314625	2.750000	chr6	114009574	114011168	LTR|ERV1|MER51-int	-	chr6	113945379	114011308	MSTRG.50718.6	-	113945379,113946007,113948978,113949167,113953276,113956012,113956618,113958648,113959905,113962366,114000000,114009990,114011130	113945470,113946148,113949087,113949260,113953418,113956151,113956693,113958766,113960018,113962394,114000099,114010117,114011308	0.888889
smooth_muscle_cell_derived_from_H9	chr2	241235121	241235256	241235121	-	RAMPAGE_only	27	28	140	4.894166	5.825483	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241229438	241230848	HDLBP|ENST00000484412.1	-	241229438,241229832,241230068,241230758	241229687,241229961,241230269,241230848	0.528571
smooth_muscle_cell_derived_from_H9	chr6	143966119	143966170	143966167	-	RAMPAGE_only	22	27	79	2.761708	4.947344	chr6	143966082	143966184	LINE|L2|L2	+	chr6	143940301	143968838	PLAGL1|ENST00000392307.2	-	143940301,143942506,143964786	143942388,143942663,143968838	0.974684
smooth_muscle_cell_derived_from_H9	chr8	20328297	20328313	20328297	-	RAMPAGE_only	4	4	10	0.349583	2.725481	chr8	20328200	20328461	SINE|MIR|MIRb	+	chr8	20320662	20321049	MSTRG.56144.1	-	20320662	20321049	0.600000
smooth_muscle_cell_derived_from_H9	chr1	222050575	222050576	222050575	+	High_confidence	306	308	326	11.396416	4.608778	chr1	222049564	222050989	LTR|ERV1|LTR12C	+	chr1	222050752	222051329	MSTRG.4740.1	+	222050752	222051329	0.947853
smooth_muscle_cell_derived_from_H9	chr4	177445145	177445194	177445145	+	High_confidence	11	11	34	1.188583	4.040775	chr4	177444910	177445732	LTR|ERV1|LTR1A2	+	chr4	177444978	177677126	AC078881.1|ENST00000507023.1	+	177444978,177451474,177593471,177596460,177623658,177675836	177445443,177451590,177593546,177596531,177623802,177677126	0.500000
smooth_muscle_cell_derived_from_H9	chr11	65439466	65439483	65439482	+	RAMPAGE_only	3	4	7	0.244708	2.521641	chr11	65439400	65439684	SINE|Alu|AluSz6	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
smooth_muscle_cell_derived_from_H9	chr1	26269282	26269283	26269282	+	High_confidence	9	10	10	0.349583	2.503258	chr1	26268831	26269405	LTR|ERV1|LTR10A	+	chr1	26269282	26278810	CEP85|NM_001281518.2	+	26269282,26269459,26271013,26272020,26274963,26276534,26277132	26269364,26269614,26271107,26272071,26275071,26276760,26278810	0.500000
smooth_muscle_cell_derived_from_H9	chr12	15956719	15956720	15956719	+	High_confidence	9	9	14	0.489417	3.324863	chr12	15956683	15956730	DNA|TcMar-Mariner|MADE1	-	chr12	15956587	16037280	DERA|ENST00000526530.1	+	15956587,15956935,15958187,15959828,15962812,15982307,16032541,16036231,16036689	15956746,15957033,15958335,15959924,15962947,15982436,16032654,16036381,16037280	0.928571
smooth_muscle_cell_derived_from_H9	chr4	173521336	173521360	173521336	+	RAMPAGE_only	8	8	17	0.594292	3.130718	chr4	173521322	173521435	DNA|hAT-Charlie|MER5A	+	chr4	173530459	173591324	HAND2-AS1|ENST00000515376.5	+	173530459,173530966,173533912,173536847,173582704,173591072	173530539,173531078,173534122,173536970,173582878,173591324	0.529412
smooth_muscle_cell_derived_from_H9	chr9	98943307	98943308	98943307	+	High_confidence	4	7	7	0.244708	2.807355	chr9	98943193	98943308	LINE|L2|L2a	-	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	1.000000
smooth_muscle_cell_derived_from_H9	chr1	49257817	49257823	49257817	-	RAMPAGE_only	11	11	34	1.188583	4.090018	chr1	49257178	49257818	LINE|L1|L1PA3	-	chr1	48817506	50023900	AGBL4|ENST00000371836.1	-	48817506,48867190,49045583,49245769,49697312,49851395,50023762	48818222,48867230,49045800,49245864,49697437,49851518,50023900	0.852941
smooth_muscle_cell_derived_from_H9	chr19	51069500	51069542	51069500	-	RAMPAGE_only	64	66	95	3.321041	5.252943	chr19	51069174	51069685	LINE|L2|L2-1_AMi	+	chr19	51059642	51065114	KLK13|ENST00000596955.1	-	51059642,51060432,51065015	51060093,51060619,51065114	0.694737
smooth_muscle_cell_derived_from_H9	chr9	129489096	129489141	129489125	+	High_confidence	7	11	40	1.398333	4.670018	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.900000
smooth_muscle_cell_derived_from_H9	chr4	189586850	189586855	189586854	-	High_confidence	223	242	437	15.276790	7.562604	chr4	189586666	189587003	LTR|ERVL-MaLR|MLT1A0	-	chr4	189585117	189586906	MSTRG.44820.1	-	189585117	189586906	0.590389
smooth_muscle_cell_derived_from_H9	chr6	146671190	146671290	146671252	+	High_confidence	51	60	394	13.773582	6.842226	chr6	146670803	146671861	LINE|L2|L2c	-	chr6	146671210	146677224	MSTRG.51378.7	+	146671210,146672219,146676312	146671379,146672467,146677224	0.649746
smooth_muscle_cell_derived_from_H9	chr10	84279967	84279968	84279967	+	High_confidence	16	17	23	0.804042	3.308751	chr10	84279967	84286006	LINE|L1|L1PA2	+	chr10	84279979	84294659	LINC00858|ENST00000415469.5	+	84279979,84288223,84288593,84288974,84291406,84293245	84280065,84288420,84288780,84289044,84292137,84294659	0.521739
smooth_muscle_cell_derived_from_H9	chr2	159428326	159428402	159428354	-	RAMPAGE_only	4	4	26	0.908917	3.829275	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.500000
smooth_muscle_cell_derived_from_H9	chr5	150640314	150640403	150640347	+	High_confidence	70	72	312	10.906999	6.296169	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640320	150656751	MSTRG.47710.8	+	150640320,150647943,150656403	150640425,150650303,150656751	0.977564
smooth_muscle_cell_derived_from_H9	chr7	133308406	133308416	133308415	+	RAMPAGE_only	8	8	15	0.524375	3.773557	chr7	133308226	133308608	LTR|ERVL-MaLR|MLT1B	+	chr7	133356386	133375028	EXOC4|ENST00000480840.1	+	133356386,133374827	133356573,133375028	0.666667
smooth_muscle_cell_derived_from_H9	chr2	187513641	187513653	187513641	-	High_confidence	17	19	50	1.747917	4.535702	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187464229	187513641	TFPI|ENST00000392365.5	-	187464229,187467752,187484123,187484810,187488336,187496880,187503647,187513615	187467042,187467932,187484216,187484987,187488375,187497078,187503770,187513641	0.920000
smooth_muscle_cell_derived_from_H9	chr12	8320264	8320284	8320264	+	High_confidence	4	4	9	0.314625	2.503258	chr12	8318355	8321168	LTR|ERV1|HERVS71-int	-	chr12	8320380	8369555	AC092745.2|ENST00000537764.1	+	8320380,8368981	8320426,8369555	0.666667
smooth_muscle_cell_derived_from_H9	chr5	148310069	148310094	148310093	+	RAMPAGE_only	18	21	31	1.083708	4.256565	chr5	148310047	148310490	DNA|TcMar-Tigger|Tigger2a	+	chr5	148312422	148315922	SPINK7|ENST00000274565.4	+	148312422,148313373,148314099,148315638	148312544,148313399,148314224,148315922	0.903226
smooth_muscle_cell_derived_from_H9	chr6	28335749	28335750	28335749	+	High_confidence	214	226	237	8.285124	6.052450	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28335685	28336445	MSTRG.48797.1	+	28335685	28336445	0.966245
smooth_muscle_cell_derived_from_H9	chr5	103129682	103129688	103129685	+	High_confidence	3	3	10	0.349583	2.725481	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	0.900000
smooth_muscle_cell_derived_from_H9	chr20	3795750	3795789	3795759	+	High_confidence	20	25	168	5.873000	5.693703	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.988095
smooth_muscle_cell_derived_from_H9	chr3	129256120	129256146	129256120	+	RAMPAGE_only	5	5	17	0.594292	3.734522	chr3	129256170	129256401	DNA|hAT|MamRep38	+	chr3	129260226	129265675	COPG1|ENST00000504547.1	+	129260226,129260618,129263903,129265548	129260400,129260807,129263999,129265675	0.882353
smooth_muscle_cell_derived_from_H9	chr11	67619986	67619987	67619986	+	High_confidence	3351	3405	3562	124.521573	4.989616	chr11	67618852	67620425	LTR|ERV1|LTR12C	+	chr11	67619993	67627473	MSTRG.9564.1	+	67619993,67626053	67620536,67627473	0.962942
smooth_muscle_cell_derived_from_H9	chr1	200756355	200756392	200756355	+	RAMPAGE_only	3	3	10	0.349583	2.503258	chr1	200756170	200756482	SINE|Alu|AluSx	+	chr1	200739778	200860701	CAMSAP2|ENST00000236925.8	+	200739778,200760838,200807375,200815560,200828572,200832199,200832705,200841993,200844781,200847209,200847639,200848031,200852540,200853274,200854816,200856009,200857305,200857753	200739966,200761098,200807537,200815644,200828605,200832341,200832845,200842087,200844869,200847292,200847709,200850234,200852677,200853495,200854889,200856125,200857424,200860701	0.500000
smooth_muscle_cell_derived_from_H9	chr7	33351952	33351978	33351952	+	RAMPAGE_only	10	13	50	1.747917	4.886842	chr7	33351872	33352111	LTR|ERV1|LTR27B	-	chr7	33344606	33605626	BBS9|ENST00000434373.3	+	33344606,33349067,33351218,33352858,33357854,33367766,33383665,33387991,33505462,33533953,33604864	33344634,33349170,33351323,33352873,33357995,33367862,33383838,33388144,33505645,33534176,33605626	0.940000
smooth_muscle_cell_derived_from_H9	chr15	45645883	45645896	45645895	+	High_confidence	7	8	13	0.454458	2.565448	chr15	45645871	45646155	DNA|hAT-Tip100|Arthur1C	+	chr15	45645880	45669946	SQOR|ENST00000561493.5	+	45645880,45658906,45661954,45669927	45646008,45659157,45662125,45669946	0.846154
smooth_muscle_cell_derived_from_H9	chr5	147872028	147872029	147872028	+	High_confidence	167	183	228	7.970499	5.154275	chr5	147871298	147874075	LTR|ERV1|HERVH-int	-	chr5	147872017	147882191	SCGB3A2|ENST00000514688.1	+	147872017,147881445,147882026	147872321,147881648,147882191	0.973684
smooth_muscle_cell_derived_from_H9	chr1	246355500	246355598	246355596	-	High_confidence	391	510	1230	42.998747	6.186326	chr1	246355513	246357091	LINE|L1|L1PB1	+	chr1	245929897	246355335	SMYD3|ENST00000453676.5	-	245929897,246327200,246330479,246335366,246355030,246355180	245929937,246327337,246330537,246335474,246355094,246355335	0.833333
smooth_muscle_cell_derived_from_H9	chr11	10044560	10044675	10044634	-	High_confidence	51	54	353	12.340291	5.663424	chr11	10044582	10044610	LTR|ERVL|LTR66	-	chr11	9853706	10044606	MSTRG.8395.11	-	9853706,9856457,9858225,9895942,9961956,9963772,9968340,9989496,9992989,9993920,9998265,10000913,10002556,10028451,10029764,10031047,10042843,10044518	9853712,9856720,9858396,9896011,9962106,9963882,9968545,9989595,9993103,9993998,9998379,10001022,10002689,10028557,10029875,10031170,10042981,10044606	0.838527
smooth_muscle_cell_derived_from_H9	chr21	33945809	33945810	33945809	-	RAMPAGE_only	24	24	24	0.839000	3.084963	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
smooth_muscle_cell_derived_from_H9	chr1	51403432	51403517	51403432	-	RAMPAGE_only	3	3	25	0.873958	3.584963	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.960000
smooth_muscle_cell_derived_from_H9	chr7	123528290	123528316	123528290	-	RAMPAGE_only	2	2	8	0.279667	2.750000	chr7	123527048	123528341	LINE|L1|L1PA3	-	chr7	123452180	123532948	IQUB|NM_001321293.1	-	123452180,123457380,123461356,123464832,123469213,123479794,123496695,123502596,123502943,123503201,123509900,123511943,123532363	123452925,123457566,123461605,123465009,123469384,123479970,123496906,123502752,123503116,123503363,123510035,123512344,123532948	0.750000
smooth_muscle_cell_derived_from_H9	chr2	237422449	237422458	237422457	-	RAMPAGE_only	23	23	77	2.691791	5.095969	chr2	237422183	237422634	LTR|ERVL-MaLR|MLT1C	-	chr2	237324011	237414375	COL6A3|ENST00000295550.8	-	237324011,237325559,237333449,237334625,237336134,237339014,237340451,237342064,237344349,237344940,237345057,237345180,237346502,237347806,237348348,237348612,237350146,237351129,237352521,237353340,237354898,237357337,237357816,237358520,237359034,237359205,237359361,237360087,237361120,237361738,237363252,237364349,237365697,237366686,237368562,237371731,237374411,237376771,237378635,237380914,237387581,237394586,237396726,237413952	237324814,237325724,237333548,237334889,237336532,237339117,237341150,237342161,237344843,237344952,237345094,237345213,237346565,237347869,237348384,237348663,237350209,237351192,237352584,237353403,237354934,237357391,237357882,237358583,237359088,237359250,237359388,237360159,237361174,237361831,237363398,237364428,237366035,237367286,237369177,237372337,237375020,237377344,237379235,237381499,237388184,237395204,237396847,237414375	0.519481
smooth_muscle_cell_derived_from_H9	chr5	34244778	34244816	34244815	-	RAMPAGE_only	7	8	20	0.699167	3.246439	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34218343	AC138409.2|ENST00000507274.1	-	34175821,34179012,34182679,34218294	34175957,34179097,34182867,34218343	0.700000
smooth_muscle_cell_derived_from_H9	chrX	8122479	8122491	8122479	+	High_confidence	4	4	8	0.279667	2.521641	chrX	8121415	8122700	LTR|ERV1|LTR12C	+	chrX	8122403	8229310	MSTRG.61503.2	+	8122403,8228334	8122723,8229310	0.500000
smooth_muscle_cell_derived_from_H9	chr11	943159	943178	943177	+	High_confidence	5	5	15	0.524375	3.378783	chr11	943120	943579	LTR|ERV1|LTR2	-	chr11	943099	972191	AP2A2|ENST00000530801.5	+	943099,959436,970168,972061	943314,959505,970311,972191	0.733333
smooth_muscle_cell_derived_from_H9	chr5	147872284	147872290	147872289	+	High_confidence	14	14	31	1.083708	3.445458	chr5	147871298	147874075	LTR|ERV1|HERVH-int	-	chr5	147872017	147882191	SCGB3A2|ENST00000514688.1	+	147872017,147881445,147882026	147872321,147881648,147882191	1.000000
smooth_muscle_cell_derived_from_H9	chr21	42925626	42925633	42925632	-	High_confidence	155	165	271	9.473708	5.845887	chr21	42925506	42925876	LTR|ERV1|MER48	-	chr21	42916802	42925646	ERVH48-1|ENST00000447535.1	-	42916802,42925345	42919291,42925646	0.963100
smooth_muscle_cell_derived_from_H9	chr4	141332616	141332617	141332616	-	High_confidence	175	175	185	6.467291	4.641603	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.945946
smooth_muscle_cell_derived_from_H9	chr12	51418125	51418158	51418125	+	RAMPAGE_only	3	3	10	0.349583	2.947703	chr12	51418065	51418366	LINE|CR1|L3	+	chr12	51420099	51453586	SLC4A8|ENST00000548352.5	+	51420099,51440707,51450875,51452123,51453538	51420208,51440789,51451022,51452259,51453586	0.700000
smooth_muscle_cell_derived_from_H9	chr17	19386333	19386401	19386333	-	High_confidence	17	20	145	5.068958	5.721612	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.972414
smooth_muscle_cell_derived_from_H9	chr19	13037408	13037416	13037408	+	RAMPAGE_only	3	3	8	0.279667	2.521641	chr19	13037335	13037620	LINE|CR1|L3b	+	chr19	13024938	13094770	NFIX|ENST00000587260.1	+	13024938,13073046,13073421,13073905,13075534,13078612,13081679,13090298,13094634	13025552,13073109,13073496,13074026,13075671,13078735,13081855,13090390,13094770	0.750000
smooth_muscle_cell_derived_from_H9	chr3	33864037	33864119	33864118	+	RAMPAGE_only	7	8	58	2.027583	4.193682	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.965517
smooth_muscle_cell_derived_from_H9	chr7	98329480	98329492	98329491	-	RAMPAGE_only	6	6	20	0.699167	3.346439	chr7	98329147	98330304	LINE|L1|L1MCa	+	chr7	98317236	98355426	BAIAP2L1|ENST00000473569.1	-	98317236,98320057,98320236,98355041	98317356,98320129,98320298,98355426	0.850000
smooth_muscle_cell_derived_from_H9	chr6	149857197	149857203	149857202	-	RAMPAGE_only	8	8	17	0.594292	3.327820	chr6	149857081	149857249	LTR|ERV1|LTR8	+	chr6	149818797	149864026	LRP11|ENST00000239367.6	-	149818797,149826263,149836084,149837337,149842982,149853002,149863407	149820703,149826359,149836297,149837463,149843124,149853160,149864026	0.588235
smooth_muscle_cell_derived_from_H9	chr19	571725	571755	571725	-	High_confidence	15	15	56	1.957667	4.381474	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567310	571734	AC009005.1|ENST00000590292.5	-	567310,571439,571696	567624,571596,571734	0.875000
smooth_muscle_cell_derived_from_H9	chr11	34692605	34692648	34692605	+	High_confidence	13	13	34	1.188583	4.616875	chr11	34691292	34692830	LINE|L1|L1PA2	-	chr11	34692412	34829420	MSTRG.8894.1	+	34692412,34709270,34714693,34732284,34754457,34829232	34692889,34710854,34715234,34732429,34754607,34829420	0.529412
smooth_muscle_cell_derived_from_H9	chr7	5563875	5563902	5563901	-	High_confidence	5	5	14	0.489417	3.521641	chr7	5563835	5564122	SINE|Alu|AluSp	-	chr7	5528591	5563784	ACTB|ENST00000432588.5	-	5528591,5529160,5529534,5563713	5528719,5529400,5529663,5563784	0.857143
smooth_muscle_cell_derived_from_H9	chr12	105332638	105332680	105332638	+	RAMPAGE_only	17	17	83	2.901541	4.942756	chr12	105332447	105332765	SINE|Alu|AluSq2	+	chr12	105330867	105370680	C12orf75|ENST00000549934.2	+	105330867,105348601,105365806,105366616,105367476,105370633	105330937,105348626,105365842,105366696,105367509,105370680	0.759036
smooth_muscle_cell_derived_from_H9	chrX	48036183	48036218	48036217	+	RAMPAGE_only	13	13	27	0.943875	4.134336	chrX	48035853	48036312	LTR|ERV1|MER92A	-	chrX	48107991	48114311	SSX6P|ENST00000412590.6	+	48107991,48109959,48110482,48111259,48113192	48108033,48110048,48110597,48111355,48114311	0.518519
smooth_muscle_cell_derived_from_H9	chr12	123630195	123630216	123630195	-	RAMPAGE_only	8	8	16	0.559333	2.655639	chr12	123629883	123630152	SINE|MIR|MIR	-	chr12	123621737	123632447	EIF2B1|ENST00000539951.5	-	123621737,123622635,123626424,123627043,123630168,123630396,123632344	123621920,123622761,123626493,123627156,123630285,123630533,123632447	0.625000
smooth_muscle_cell_derived_from_H9	chr21	35357581	35357656	35357633	+	High_confidence	63	109	343	11.990707	5.801442	chr21	35357490	35357852	LTR|ERVL-MaLR|MLT1A	+	chr21	35357646	35361936	MSTRG.35814.1	+	35357646	35361936	0.997085
smooth_muscle_cell_derived_from_H9	chr4	99021631	99021632	99021631	-	High_confidence	8387	8398	8932	312.247808	7.017739	chr4	99021524	99021908	LTR|ERV1|LTR10C	-	chr4	99013419	99021645	MSTRG.43179.3	-	99013419,99017293,99021303	99016142,99020149,99021645	0.935849
smooth_muscle_cell_derived_from_H9	chr15	74354435	74354436	74354435	+	High_confidence	22	23	24	0.839000	3.675311	chr15	74354143	74354537	LTR|ERV1|LTR7	+	chr15	74354455	74364620	PPIAP46|ENST00000562009.1	+	74354455,74361513	74354685,74364620	0.500000
smooth_muscle_cell_derived_from_H9	chr12	56157338	56157352	56157341	+	High_confidence	8	8	22	0.769083	2.582031	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.863636
smooth_muscle_cell_derived_from_H9	chr5	102671340	102671464	102671421	-	High_confidence	33	34	225	7.865624	6.624956	chr5	102671229	102677260	LINE|L1|L1PA2	+	chr5	102608491	102671464	LINC00491|NR_103753.1	-	102608491,102636142,102671226	102609766,102636291,102671464	0.546667
smooth_muscle_cell_derived_from_H9	chr12	67718666	67718667	67718666	-	RAMPAGE_only	12	12	12	0.419500	3.251629	chr12	67718353	67719796	LTR|ERV1|LTR12C	-	chr12	67709046	67729475	LINC02421|ENST00000542219.1	-	67709046,67715321,67718342,67722378,67729395	67710685,67716203,67718541,67722713,67729475	1.000000
smooth_muscle_cell_derived_from_H9	chr7	44619050	44619051	44619050	+	RAMPAGE_only	50	50	57	1.992625	4.952457	chr7	44618793	44619481	LTR|ERVL|MER21A	+	chr7	44606638	44709066	OGDH|ENST00000222673.5	+	44606638,44624316,44645326,44647656,44666735,44673786,44674410,44675177,44675969,44681719,44693824,44694423,44696024,44696428,44696913,44697369,44697603,44698191,44700140,44701542,44707224,44707581,44707878	44606653,44624565,44645518,44647759,44666851,44673941,44674557,44675268,44676149,44681848,44694004,44694576,44696127,44696557,44697064,44697497,44697782,44698263,44700269,44701615,44707388,44707736,44709066	0.631579
smooth_muscle_cell_derived_from_H9	chr2	237433088	237433150	237433126	-	RAMPAGE_only	20	20	89	3.111291	5.546016	chr2	237433039	237433227	DNA|hAT-Ac|OldhAT1	+	chr2	237324018	237434822	MSTRG.34026.6	-	237324018,237325559,237333449,237334625,237336134,237339014,237340451,237342064,237344349,237344940,237345057,237345180,237346502,237347806,237348348,237348612,237350146,237351129,237352521,237353340,237354898,237357337,237357816,237358520,237359034,237359205,237359361,237360087,237361120,237361738,237363252,237364349,237365697,237366686,237368562,237371731,237374411,237376771,237378635,237380914,237387581,237396726,237414439,237422124,237425218,237425927,237433060,237434656	237324814,237325724,237333548,237334889,237336532,237339117,237341150,237342161,237344843,237344952,237345094,237345213,237346565,237347869,237348384,237348663,237350209,237351192,237352584,237353403,237354934,237357391,237357882,237358583,237359088,237359250,237359388,237360159,237361174,237361831,237363398,237364428,237366035,237367286,237369177,237372337,237375020,237377344,237379235,237381499,237388184,237396847,237421840,237422233,237425303,237426032,237433156,237434822	0.910112
smooth_muscle_cell_derived_from_H9	chr4	168638702	168638703	168638702	-	RAMPAGE_only	7	8	8	0.279667	2.521641	chr4	168638514	168638858	LTR|ERVL-MaLR|MLT1A0	-	chr4	168476066	168537786	DDX60L|ENST00000505150.5	-	168476066,168490357,168492665,168530560,168537640	168476120,168490450,168492885,168530702,168537786	0.750000
smooth_muscle_cell_derived_from_H9	chr11	86395142	86395161	86395142	+	High_confidence	3	3	14	0.489417	2.931209	chr11	86395046	86395200	DNA|TcMar-Mariner|MARNA	+	chr11	86395151	86409365	CCDC81|ENST00000532215.5	+	86395151,86400677,86407613,86409260	86395413,86400801,86407701,86409365	0.500000
smooth_muscle_cell_derived_from_H9	chr5	142644368	142644374	142644368	-	High_confidence	4	4	10	0.349583	2.646439	chr5	142644345	142644398	LTR|ERVL-MaLR|MLT1N2	+	chr5	142592177	142644301	FGF1|NM_001257210.1	-	142592177,142600701,142613958,142644112	142595484,142600805,142614161,142644301	1.000000
smooth_muscle_cell_derived_from_H9	chr18	22798014	22798095	22798014	+	High_confidence	26	27	85	2.971458	4.555573	chr18	22797898	22798203	SINE|Alu|AluY	-	chr18	22798260	22936883	RBBP8|ENST00000583700.5	+	22798260,22911599,22915419,22929382,22936753	22798487,22911685,22915485,22929437,22936883	0.870588
smooth_muscle_cell_derived_from_H9	chr1	238485982	238486036	238486008	-	High_confidence	4	4	13	0.454458	2.584963	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480383	238486017	LINC01139|NR_015407.1	-	238480383,238485784	238481681,238486017	0.769231
smooth_muscle_cell_derived_from_H9	chr1	245943818	245943841	245943837	-	RAMPAGE_only	18	20	60	2.097500	4.763071	chr1	245941822	245946127	LINE|L1|L1PA10	+	chr1	245749341	245956102	SMYD3|ENST00000366517.5	-	245749341,245764040,245858495,245863798,245915529,245927930,245929869,245953230,245955832	245749664,245764149,245858670,245863886,245915640,245928033,245929937,245953355,245956102	0.983333
smooth_muscle_cell_derived_from_H9	chr11	75979512	75979526	75979512	+	High_confidence	3	3	12	0.419500	3.095795	chr11	75974665	75980018	LINE|L1|L1PA6	-	chr11	75979525	76142651	UVRAG|ENST00000531818.5	+	75979525,75983386,76004004,76007533,76008806,76016814,76065709,76115923,76140710	75980038,75983513,76004089,76007621,76008867,76016980,76065788,76116015,76142651	0.916667
smooth_muscle_cell_derived_from_H9	chr1	168787067	168787124	168787087	+	High_confidence	13	14	50	1.747917	4.912782	chr1	168786791	168787303	LTR|ERVL-MaLR|MLT1L	+	chr1	168786940	168792888	LINC00626|NR_024160.1	+	168786940,168788780,168792330	168787228,168788889,168792888	0.880000
smooth_muscle_cell_derived_from_H9	chr22	50757000	50757034	50757033	+	High_confidence	4	4	16	0.559333	2.827820	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.687500
smooth_muscle_cell_derived_from_H9	chr21	6496505	6496521	6496520	-	High_confidence	2	2	7	0.244708	2.584963	chr21	6496481	6496638	SINE|MIR|MIRb	+	chr21	6484622	6496930	U2AF1L5|ENST00000623375.3	-	6484622,6486137,6486321,6487106,6487362,6492130,6495992	6484916,6486230,6486455,6487205,6487412,6492197,6496930	0.714286
smooth_muscle_cell_derived_from_H9	chr3	110853342	110853674	110853487	-	RAMPAGE_only	37	38	441	15.416624	5.100622	chr3	110853349	110853813	LTR|ERVL-MaLR|MLT1C	+	chr3	110819784	110893476	MSTRG.39434.5	-	110819784,110889425,110893137	110889209,110892603,110893476	1.000000
smooth_muscle_cell_derived_from_H9	chr3	169812903	169812904	169812903	-	High_confidence	12	12	17	0.594292	3.616875	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	1.000000
smooth_muscle_cell_derived_from_H9	chr5	95713494	95713522	95713521	+	RAMPAGE_only	99	116	333	11.641124	5.335478	chr5	95713280	95713670	LTR|ERVL-MaLR|MSTA	+	chr5	95717632	95756093	RHOBTB3|ENST00000504949.1	+	95717632,95731858,95736888,95748332,95752238,95755395	95717765,95732084,95737075,95748487,95752350,95756093	0.897898
smooth_muscle_cell_derived_from_H9	chr11	47214671	47214672	47214671	+	High_confidence	8	8	12	0.419500	3.251629	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214569	47234653	DDB2|ENST00000614825.4	+	47214569,47215072,47216335,47216857,47232813,47234572	47214674,47215263,47216472,47217049,47232959,47234653	0.916667
smooth_muscle_cell_derived_from_H9	chr1	232553342	232553343	232553342	-	RAMPAGE_only	8	8	10	0.349583	2.921928	chr1	232552807	232553528	LTR|ERV1|LTR1F1	-	chr1	232397964	232561558	SIPA1L2|ENST00000366630.5	-	232397964,232402391,232403447,232404124,232415493,232425588,232428410,232432246,232439107,232441290,232441767,232443601,232445528,232460886,232464839,232471370,232479626,232483791,232490873,232493526,232513856,232561468	232399273,232402473,232403571,232404178,232415625,232425808,232428564,232432471,232439496,232441394,232441868,232443685,232445786,232461161,232465416,232471528,232479730,232483966,232491062,232493660,232515608,232561558	0.700000
smooth_muscle_cell_derived_from_H9	chr17	77390294	77390295	77390294	+	RAMPAGE_only	6	6	8	0.279667	2.500000	chr17	77390212	77390366	SINE|Alu|AluYc	+	chr17	77380122	77402483	SEPT9|ENST00000589140.1	+	77380122,77402058	77380249,77402483	0.625000
smooth_muscle_cell_derived_from_H9	chr12	79045254	79045270	79045259	+	High_confidence	10	12	34	1.188583	4.635007	chr12	79039621	79045645	LINE|L1|L1PA2	-	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.852941
smooth_muscle_cell_derived_from_H9	chr4	187995728	187995788	187995770	+	High_confidence	60	69	255	8.914374	5.474116	chr4	187995806	187995869	DNA|hAT-Charlie|MER112	+	chr4	187995770	188005050	ZFP42|NM_174900.4	+	187995770,187999107,187999608,188002712	187995840,187999273,187999685,188005050	0.949020
smooth_muscle_cell_derived_from_H9	chr4	54264926	54265041	54265040	+	RAMPAGE_only	12	14	109	3.810458	4.663927	chr4	54265070	54265216	SINE|MIR|MIR3	+	chr4	54229310	54281978	PDGFRA|ENST00000509490.5	+	54229310,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54278818,54280315,54281580	54229415,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54278971,54280482,54281978	0.990826
smooth_muscle_cell_derived_from_H9	chr6	3720076	3720077	3720076	-	High_confidence	60	61	68	2.377166	4.356164	chr6	3719558	3721329	LTR|ERV1|LTR12C	-	chr6	3719429	3719673	MSTRG.48246.1	-	3719429	3719673	0.720588
smooth_muscle_cell_derived_from_H9	chr2	171433137	171433148	171433147	-	High_confidence	3	3	10	0.349583	3.169925	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.500000
smooth_muscle_cell_derived_from_H9	chr1	19094124	19094131	19094129	-	High_confidence	3	4	8	0.279667	2.521641	chr1	19094127	19094245	LINE|RTE-BovB|MamRTE1	+	chr1	19092732	19093440	UBR4|ENST00000492606.1	-	19092732,19093312	19092918,19093440	0.750000
smooth_muscle_cell_derived_from_H9	chr3	101466874	101466901	101466874	-	High_confidence	22	23	76	2.656833	5.211165	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324272	101467004	MSTRG.39267.2	-	101324272,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101466808	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101467004	0.934211
smooth_muscle_cell_derived_from_H9	chr5	154409565	154409582	154409581	+	RAMPAGE_only	3	3	8	0.279667	2.500000	chr5	154409601	154409687	LINE|L1|L1PREC2	+	chr5	154403776	154419033	GALNT10|ENST00000517958.1	+	154403776,154409540,154412888,154415782,154416813	154404216,154409762,154413005,154415932,154419033	1.000000
smooth_muscle_cell_derived_from_H9	chr9	22216806	22216810	22216806	-	RAMPAGE_only	14	15	28	0.978833	3.767376	chr9	22216506	22217927	LINE|L1|L1M1	+	chr9	22203989	22214672	AL157937.1|ENST00000435092.1	-	22203989,22213277,22213676,22214464	22204059,22213349,22213769,22214672	0.678571
smooth_muscle_cell_derived_from_H9	chr5	9396740	9396766	9396765	-	RAMPAGE_only	5	5	18	0.629250	3.308271	chr5	9396382	9396917	LTR|ERVL|MER74B	+	chr5	9202123	9380201	SEMA5A|ENST00000513968.4	-	9202123,9224673,9226868,9237827,9318371,9337712,9379822,9380106	9202240,9224887,9226967,9237890,9318417,9337812,9380023,9380201	1.000000
smooth_muscle_cell_derived_from_H9	chr3	132312014	132312101	132312031	+	RAMPAGE_only	11	14	54	1.887750	5.171373	chr3	132312013	132312315	LTR|ERVL-MaLR|MLT1E1A	+	chr3	132317366	132358752	ACPP|ENST00000336375.9	+	132317366,132328266,132331646,132332191,132337455,132342551,132344926,132349919,132352719,132356685	132317576,132328362,132331733,132332344,132337554,132342644,132345059,132350002,132352823,132358752	1.000000
smooth_muscle_cell_derived_from_H9	chr6	118576426	118576451	118576426	+	RAMPAGE_only	5	8	31	1.083708	4.131300	chr6	118576268	118576608	LTR|ERV1|HERVIP10B3-int	+	chr6	118574401	118590900	MSTRG.50840.3	+	118574401,118576250,118582402	118574699,118577306,118590900	0.774194
smooth_muscle_cell_derived_from_H9	chr14	20828082	20828133	20828120	-	High_confidence	60	73	357	12.480124	5.433283	chr14	20823192	20828253	LTR|ERV1|HERVIP10FH-int	-	chr14	20824502	20828133	MSTRG.16066.1	-	20824502,20827990	20825472,20828133	0.647059
smooth_muscle_cell_derived_from_H9	chr3	197299286	197299320	197299286	-	High_confidence	4	4	17	0.594292	3.452820	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197042559	197299272	DLG1|NM_001290983.1	-	197042559,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299272	0.823529
smooth_muscle_cell_derived_from_H9	chr2	6918647	6918667	6918666	-	High_confidence	6	6	15	0.524375	3.456565	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6916850	6918663	RNF144A-AS1|ENST00000439208.1	-	6916850,6918280	6917224,6918663	0.733333
smooth_muscle_cell_derived_from_H9	chr22	50756814	50756842	50756841	+	High_confidence	4	4	14	0.489417	3.026987	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.571429
smooth_muscle_cell_derived_from_H9	chr19	46180850	46180863	46180862	-	High_confidence	20	22	38	1.328417	3.829240	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46163892	46180647	AC006262.2|ENST00000599127.1	-	46163892,46164577,46173933,46179485,46180604	46164216,46164651,46174052,46179537,46180647	0.894737
smooth_muscle_cell_derived_from_H9	chr8	83911056	83911057	83911056	+	RAMPAGE_only	23	25	25	0.873958	4.243856	chr8	83911058	83911187	LTR|ERV1|LTR38A1	+	chr8	83912682	83980150	MSTRG.57097.3	+	83912682,83967327,83978571,83979924	83912835,83976926,83978766,83980150	0.720000
smooth_muscle_cell_derived_from_H9	chr6	31836434	31836441	31836434	+	High_confidence	3	4	9	0.314625	2.725481	chr6	31836272	31836535	SINE|Alu|AluJb	-	chr6	31836842	31839764	C6orf48|ENST00000395788.3	+	31836842,31839542	31837435,31839764	0.888889
smooth_muscle_cell_derived_from_H9	chr1	162781435	162781471	162781470	+	RAMPAGE_only	4	5	11	0.384542	2.521928	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.909091
smooth_muscle_cell_derived_from_H9	chr9	106278141	106278185	106278172	+	High_confidence	3	3	13	0.454458	3.022055	chr9	106277947	106278267	LINE|RTE-X|L4_C_Mam	+	chr9	106278391	106604795	LINC01505|ENST00000435485.5	+	106278391,106279100,106499486,106500356,106558471,106588376,106603755	106278472,106279190,106499612,106500505,106558583,106588464,106604795	0.769231
smooth_muscle_cell_derived_from_H9	chr5	75336495	75336516	75336514	+	High_confidence	6	7	13	0.454458	3.022055	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.923077
smooth_muscle_cell_derived_from_H9	chr3	128626784	128626821	128626820	-	RAMPAGE_only	11	11	28	0.978833	4.162295	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.964286
smooth_muscle_cell_derived_from_H9	chr16	65231461	65231486	65231461	+	High_confidence	2	3	11	0.384542	3.277613	chr16	65230856	65231518	LTR|ERV1|HERVH-int	-	chr16	65232062	65393675	MSTRG.21951.2	+	65232062,65371096,65392993	65233403,65371185,65393675	0.545455
smooth_muscle_cell_derived_from_H9	chr8	24192091	24192108	24192091	+	RAMPAGE_only	3	3	8	0.279667	2.500000	chr8	24191849	24192335	LTR|ERVL|LTR108b_Mam	+	chr8	24294039	24336099	ADAM28|NR_130709.1	+	24294039,24299973,24309893,24310162,24311360,24320235,24321217,24323833,24326553,24329984,24331149,24332659,24335445	24294195,24300077,24309970,24310241,24311437,24320307,24321289,24324003,24326635,24330115,24331327,24332749,24336099	0.625000
smooth_muscle_cell_derived_from_H9	chr14	101995248	101995300	101995299	+	RAMPAGE_only	7	7	18	0.629250	3.683542	chr14	101995329	101995627	SINE|Alu|AluY	+	chr14	101964572	102011733	DYNC1H1|ENST00000643684.1	+	101964572,101975711,101979318,101979718,101980363,101983018,101983381,101985686,101987452,101988702,101991526,101994183,101994672,101994985,101995180,101997034,101999988,102000285,102000953,102001144,102001534,102002536,102002791,102004517,102005041,102005887,102007007,102008177,102009842,102010275,102010739	101964947,101975799,101979492,101979974,101980550,101983290,101983609,101986763,101987632,101988852,101991673,101994324,101994849,101995096,101995300,101997274,102000144,102000399,102001064,102001354,102001681,102002703,102002965,102004950,102005236,102006170,102007108,102008337,102010086,102010459,102011733	0.833333
smooth_muscle_cell_derived_from_H9	chr19	35164180	35164229	35164228	+	High_confidence	14	15	111	3.880375	3.615304	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	0.981982
smooth_muscle_cell_derived_from_H9	chr10	93431488	93431509	93431488	-	RAMPAGE_only	2	2	9	0.314625	2.500000	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.888889
smooth_muscle_cell_derived_from_H9	chr22	36481969	36481986	36481985	-	High_confidence	8	8	14	0.489417	3.378783	chr22	36481702	36481993	SINE|Alu|AluSc	-	chr22	36467035	36482030	TXN2|ENST00000216185.6	-	36467035,36476732,36480574,36481563	36467917,36476856,36480837,36482030	0.785714
smooth_muscle_cell_derived_from_H9	chr20	41553300	41553364	41553363	-	RAMPAGE_only	67	68	158	5.523416	5.790180	chr20	41553243	41553781	LTR|ERV1|LTR10E	+	chr20	41496808	41533285	CHD6|ENST00000470470.1	-	41496808,41498167,41499294,41512845,41514804,41533049	41497501,41498226,41499357,41512995,41514952,41533285	0.702532
smooth_muscle_cell_derived_from_H9	chr20	8600707	8600736	8600707	+	High_confidence	4	4	20	0.699167	3.576618	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.750000
smooth_muscle_cell_derived_from_H9	chr1	75376223	75376230	75376223	-	RAMPAGE_only	5	5	10	0.349583	2.646439	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.900000
smooth_muscle_cell_derived_from_H9	chr21	26405942	26405972	26405942	+	RAMPAGE_only	10	12	23	0.804042	3.663533	chr21	26405595	26406023	LTR|ERVL|LTR16	+	chr21	26416508	26471198	AP001596.1|ENST00000444306.1	+	26416508,26470750	26416661,26471198	0.695652
smooth_muscle_cell_derived_from_H9	chr6	35566953	35566954	35566953	-	High_confidence	309	390	421	14.717457	6.511653	chr6	35566829	35567331	LTR|ERV1|LTR10B	-	chr6	35563142	35566994	MSTRG.49125.2	-	35563142,35566613	35563528,35566994	0.907363
smooth_muscle_cell_derived_from_H9	chr18	36807846	36807887	36807856	-	High_confidence	3	3	12	0.419500	3.027169	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.916667
smooth_muscle_cell_derived_from_H9	chr3	110969905	110969910	110969905	-	High_confidence	27	28	59	2.062542	4.908339	chr3	110969731	110970304	LTR|ERV1|LTR10C	-	chr3	110752778	110969827	MSTRG.39434.2	-	110752778,110788562,110893137,110969501	110788541,110892603,110893830,110969827	0.677966
smooth_muscle_cell_derived_from_H9	chr12	116759927	116759935	116759934	+	High_confidence	31	31	85	2.971458	3.804915	chr12	116756444	116760863	LINE|L1|L1PB1	-	chr12	116760024	116760516	MSTRG.14099.1	+	116760024	116760516	0.952941
smooth_muscle_cell_derived_from_H9	chr9	87041968	87042111	87042110	-	High_confidence	19	19	124	4.334833	5.678438	chr9	87041882	87047900	LINE|L1|L1PA3	+	chr9	87008450	87042126	LOC440173|NR_027471.1	-	87008450,87041870	87010210,87042126	0.758065
smooth_muscle_cell_derived_from_H9	chr3	11225985	11226026	11226025	+	High_confidence	42	44	155	5.418541	5.855450	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.677419
smooth_muscle_cell_derived_from_H9	chr3	129488050	129488061	129488060	+	High_confidence	9	12	20	0.699167	3.921928	chr3	129487859	129488081	LINE|L2|L2c	-	chr3	129488190	129502764	IFT122|ENST00000507221.1	+	129488190,129495445,129499901,129502710	129488397,129495607,129500068,129502764	0.600000
smooth_muscle_cell_derived_from_H9	chr11	123060156	123060256	123060250	-	High_confidence	28	29	366	12.794749	5.246092	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.726776
smooth_muscle_cell_derived_from_H9	chr3	110971345	110971392	110971391	-	RAMPAGE_only	31	44	125	4.369791	5.973678	chr3	110971073	110971493	LTR|ERVL|LTR79	-	chr3	110752778	110969827	MSTRG.39434.2	-	110752778,110788562,110893137,110969501	110788541,110892603,110893830,110969827	0.840000
smooth_muscle_cell_derived_from_H9	chr1	6208681	6208682	6208681	-	High_confidence	131	131	134	4.684416	3.678903	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.962687
smooth_muscle_cell_derived_from_H9	chr10	104254172	104254264	104254172	+	High_confidence	17	17	96	3.356000	5.240842	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254163	104266190	GSTO1|ENST00000493946.1	+	104254163,104255162,104259575,104262978,104266083	104254499,104255271,104259798,104263077,104266190	0.927083
smooth_muscle_cell_derived_from_H9	chr7	101308260	101308325	101308299	+	High_confidence	16	17	73	2.551958	5.189911	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.931507
smooth_muscle_cell_derived_from_H9	chr15	97295828	97295902	97295828	+	High_confidence	6	6	44	1.538167	4.702557	chr15	97289925	97296313	LINE|L1|L1PA3	-	chr15	97295880	97415824	LINC02253|ENST00000560314.1	+	97295880,97411191,97415789	97296323,97411278,97415824	0.500000
smooth_muscle_cell_derived_from_H9	chr2	237297900	237297956	237297955	-	RAMPAGE_only	6	6	60	2.097500	5.327642	chr2	237297781	237297905	LINE|CR1|L3	-	chr2	237285669	237313353	MSTRG.34023.1	-	237285669	237313353	1.000000
smooth_muscle_cell_derived_from_H9	chr2	86482548	86482597	86482577	+	RAMPAGE_only	5	5	23	0.804042	3.272804	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.826087
smooth_muscle_cell_derived_from_H9	chr1	179856142	179856152	179856142	-	RAMPAGE_only	4	4	14	0.489417	2.777363	chr1	179855896	179856189	SINE|Alu|AluSz	+	chr1	179839966	179877799	TOR1AIP2|ENST00000367612.7	-	179839966,179847534,179850844,179852631,179877238,179877692	179846828,179847636,179851363,179852811,179877373,179877799	0.928571
smooth_muscle_cell_derived_from_H9	chr20	51862884	51862954	51862895	-	High_confidence	18	19	194	6.781916	4.667549	chr20	51862738	51863120	LTR|ERVL-MaLR|MLT1J	-	chr20	51782330	51862934	MSTRG.35133.1	-	51782330,51788860,51790021,51862766	51784684,51789141,51792352,51862934	0.896907
smooth_muscle_cell_derived_from_H9	chr21	42925554	42925555	42925554	-	High_confidence	7	7	11	0.384542	3.121928	chr21	42925506	42925876	LTR|ERV1|MER48	-	chr21	42917250	42925598	ERVH48-1|NM_001308491.1	-	42917250,42925345	42919291,42925598	0.909091
smooth_muscle_cell_derived_from_H9	chr9	129208607	129208620	129208613	+	RAMPAGE_only	4	4	13	0.454458	2.918296	chr9	129208534	129208778	LINE|L2|L2c	+	chr9	129176770	129210548	AL158151.1|ENST00000372490.3	+	129176770,129208868	129177137,129210548	0.538462
smooth_muscle_cell_derived_from_H9	chrX	129493040	129493060	129493059	-	RAMPAGE_only	4	6	14	0.489417	2.603158	chrX	129492703	129493323	LINE|L1|L1ME4a	+	chrX	129446845	129523246	MSTRG.63203.5	-	129446845,129448332,129465519,129465843,129468772,129471203,129480700,129481074,129487017,129488936,129490059,129491940,129493039,129496749,129497844,129499731,129504733,129506079,129507940,129511803,129515686,129515893,129518360,129523196	129447301,129448443,129465732,129465962,129468905,129471326,129480814,129481185,129487137,129489085,129490192,129492093,129493075,129496871,129498071,129499841,129504802,129506211,129508096,129511983,129515787,129515994,129518447,129523246	0.928571
smooth_muscle_cell_derived_from_H9	chr17	49076616	49076620	49076616	-	High_confidence	20	20	49	1.712958	4.149925	chr17	49076571	49077089	LTR|ERV1|MER41B	-	chr17	49041252	49076448	MSTRG.24372.1	-	49041252,49075314,49076284	49041453,49075395,49076448	0.938776
smooth_muscle_cell_derived_from_H9	chr17	14776817	14776967	14776817	-	High_confidence	24	25	246	8.599749	6.346561	chr17	14776695	14777201	LTR|ERVL-MaLR|MLT1F	+	chr17	14767553	14776983	MSTRG.23148.1	-	14767553,14776732	14770246,14776983	0.752033
smooth_muscle_cell_derived_from_H9	chr7	137268573	137268579	137268578	-	High_confidence	17	21	40	1.398333	4.164736	chr7	137268351	137268846	LTR|ERV1|LTR2B	-	chr7	137227533	137268578	MSTRG.55165.3	-	137227533,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268578	0.875000
smooth_muscle_cell_derived_from_H9	chr16	65230480	65230486	65230480	+	RAMPAGE_only	23	24	47	1.643042	4.894598	chr16	65230256	65230852	LTR|ERV1|HERVH-int	-	chr16	65232062	65393675	MSTRG.21951.2	+	65232062,65371096,65392993	65233403,65371185,65393675	0.553191
smooth_muscle_cell_derived_from_H9	chr12	122064375	122064376	122064375	+	RAMPAGE_only	10	10	10	0.349583	2.921928	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.600000
smooth_muscle_cell_derived_from_H9	chr1	154975505	154975552	154975505	+	High_confidence	9	9	53	1.852792	4.324797	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.867925
smooth_muscle_cell_derived_from_H9	chr11	76669798	76669826	76669798	-	High_confidence	5	5	21	0.734125	3.975418	chr11	76669703	76669860	SINE|MIR|MIRb	-	chr11	76657523	76670000	LRRC32|NM_005512.2	-	76657523,76665870,76669761	76661508,76665958,76670000	0.571429
smooth_muscle_cell_derived_from_H9	chr7	45940448	45940452	45940451	+	High_confidence	153	164	230	8.040416	6.007984	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45940443	45999322	MSTRG.53275.3	+	45940443,45977576,45978349,45979908,45990532,45994289,45998843	45940880,45977678,45978468,45980027,45991077,45994392,45999322	0.930435
smooth_muscle_cell_derived_from_H9	chr14	55796682	55796688	55796687	-	High_confidence	9	12	20	0.699167	3.721928	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55782423	55796688	LINC00520|ENST00000554221.6	-	55782423,55793045,55796602	55782774,55793456,55796688	0.500000
smooth_muscle_cell_derived_from_H9	chr1	212688413	212688487	212688486	-	High_confidence	22	22	79	2.761708	4.094229	chr1	212688077	212688769	LINE|CR1|L3	-	chr1	212686417	212687509	BATF3|ENST00000471382.5	-	212686417,212687466	212686979,212687509	0.822785
smooth_muscle_cell_derived_from_H9	chr12	46266514	46266535	46266514	-	High_confidence	3	6	15	0.524375	3.456565	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.866667
smooth_muscle_cell_derived_from_H9	chr22	50539658	50539697	50539658	-	High_confidence	19	20	99	3.460875	4.676003	chr22	50539605	50539880	LTR|ERV1|MER57F	+	chr22	50539316	50539735	MSTRG.37235.1	-	50539316	50539735	0.757576
smooth_muscle_cell_derived_from_H9	chr5	109383446	109383500	109383446	-	High_confidence	9	12	42	1.468250	4.262984	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.928571
smooth_muscle_cell_derived_from_H9	chr4	11066531	11066563	11066562	+	High_confidence	6	6	23	0.804042	3.588354	chr4	11060915	11066938	LINE|L1|L1PA2	-	chr4	11066459	11066932	MSTRG.41858.1	+	11066459	11066932	0.608696
smooth_muscle_cell_derived_from_H9	chr5	122126880	122126884	122126880	+	High_confidence	58	88	142	4.964083	5.416605	chr5	122126924	122127030	DNA|hAT?|MER121	+	chr5	122126891	122127322	MSTRG.46876.1	+	122126891	122127322	0.725352
smooth_muscle_cell_derived_from_H9	chr18	976392	976484	976418	+	High_confidence	9	9	75	2.621875	4.994107	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976588	1159391	AP005328.1|ENST00000577719.5	+	976588,1133842,1137813,1159178	976895,1133952,1137864,1159391	0.706667
smooth_muscle_cell_derived_from_H9	chr6	7347436	7347482	7347470	-	RAMPAGE_only	2	2	9	0.314625	2.500000	chr6	7347074	7349650	LINE|L1|L1PB1	+	chr6	7326655	7389390	CAGE1|ENST00000458291.6	-	7326655,7329848,7334021,7355040,7356024,7365467,7365803,7368687,7369918,7373072,7378616,7385784,7386978,7389201	7326899,7329888,7334090,7355111,7356129,7365630,7365884,7368798,7370065,7374131,7379020,7385872,7387196,7389390	0.555556
smooth_muscle_cell_derived_from_H9	chr5	171400153	171400204	171400153	+	RAMPAGE_only	8	10	65	2.272291	5.033681	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171407492	171410884	NPM1|ENST00000524204.1	+	171407492,171410526	171407774,171410884	0.569231
smooth_muscle_cell_derived_from_H9	chr5	33441353	33441375	33441368	+	High_confidence	6	7	25	0.873958	4.023465	chr5	33441307	33441471	SINE|MIR|MIR3	-	chr5	33441380	33448730	TARS|ENST00000506040.1	+	33441380,33445323,33448540	33441864,33445404,33448730	0.920000
smooth_muscle_cell_derived_from_H9	chr3	9792262	9792275	9792274	-	High_confidence	5	8	16	0.559333	3.323231	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9783127	9792736	TADA3|ENST00000343450.2	-	9783127,9785315,9787005,9787198,9789508,9789712,9791259,9792215	9784213,9785425,9787109,9787340,9789614,9789963,9791493,9792736	0.500000
smooth_muscle_cell_derived_from_H9	chr16	72627719	72627772	72627765	-	RAMPAGE_only	16	16	54	1.887750	4.987934	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.629630
smooth_muscle_cell_derived_from_H9	chr2	174409993	174410020	174410019	+	High_confidence	43	46	117	4.090125	5.231040	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410036	174428859	SCRN3|ENST00000548921.5	+	174410036,174422884,174424474,174427712	174410225,174423047,174424649,174428859	0.803419
smooth_muscle_cell_derived_from_H9	chr2	218398232	218398233	218398232	+	High_confidence	19	20	25	0.873958	3.783465	chr2	218398216	218398343	SINE|MIR|MIRb	+	chr2	218398255	218404418	CTDSP1|ENST00000491064.5	+	218398255,218401563,218402113,218402348,218403034,218403231,218404296	218398332,218401712,218402215,218402405,218403127,218403417,218404418	0.520000
smooth_muscle_cell_derived_from_H9	chr4	127656516	127656550	127656549	+	RAMPAGE_only	2	2	9	0.314625	3.000000	chr4	127656412	127656592	SINE|MIR|MIR3	+	chr4	127632965	127716479	INTU|ENST00000503952.5	+	127632965,127643520,127656635,127663380,127669035,127674123,127684408,127685441,127687740,127700009,127704227,127705590,127706486,127708570,127710912,127713935,127716324	127633180,127644056,127656721,127663584,127669154,127674213,127684486,127685569,127687867,127700063,127704290,127705812,127706969,127708668,127711102,127714093,127716479	0.888889
smooth_muscle_cell_derived_from_H9	chr3	139344535	139344548	139344547	+	High_confidence	460	461	1181	41.285788	5.903481	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.963590
smooth_muscle_cell_derived_from_H9	chr1	43120089	43120148	43120089	+	RAMPAGE_only	8	8	24	0.839000	3.907268	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43145152	43156396	FAM183A|ENST00000410048.5	+	43145152,43150760,43152827,43156205	43145297,43150820,43152931,43156396	0.500000
smooth_muscle_cell_derived_from_H9	chr19	18788234	18788292	18788234	-	RAMPAGE_only	8	9	35	1.223542	4.422001	chr19	18787917	18788201	SINE|Alu|AluSc	-	chr19	18786117	18787035	COMP|ENST00000612179.1	-	18786117,18786238,18786531	18786146,18786291,18787035	0.800000
smooth_muscle_cell_derived_from_H9	chr16	396832	396853	396852	+	High_confidence	3	3	12	0.419500	2.845351	chr16	396818	396940	SINE|Alu|AluJb	-	chr16	396754	400754	NME4|NM_001286436.1	+	396754,398989,399378,399626,400218	397079,399123,399480,399739,400754	0.916667
smooth_muscle_cell_derived_from_H9	chr3	54982702	54982711	54982702	-	High_confidence	20	21	35	1.223542	3.854635	chr3	54982534	54983085	LTR|ERV1|MER41A	-	chr3	54978467	54982026	MSTRG.38581.1	-	54978467,54978747,54979208,54981991	54978504,54978819,54979370,54982026	0.542857
smooth_muscle_cell_derived_from_H9	chr5	181247582	181247599	181247598	-	High_confidence	4	4	8	0.279667	2.500000	chr5	181247404	181247700	SINE|Alu|AluY	+	chr5	181238119	181247576	RACK1|ENST00000510199.5	-	181238119,181239066,181239486,181241491,181242173,181247123	181238239,181239177,181239582,181241639,181242345,181247576	1.000000
smooth_muscle_cell_derived_from_H9	chr19	45424370	45424383	45424370	-	High_confidence	6	6	25	0.873958	3.893661	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	0.920000
smooth_muscle_cell_derived_from_H9	chr4	188109333	188109388	188109344	-	RAMPAGE_only	15	15	74	2.586916	5.008137	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188091272	188105593	TRIML2|ENST00000512729.5	-	188091272,188097060,188097323,188099034,188101055,188104836,188105179	188091941,188097161,188097346,188099175,188101250,188104932,188105593	0.972973
smooth_muscle_cell_derived_from_H9	chr4	119525216	119525249	119525216	-	RAMPAGE_only	2	2	13	0.454458	3.251629	chr4	119525094	119525324	LINE|L2|L2c	+	chr4	119500822	119519099	PDE5A|ENST00000503412.1	-	119500822,119502580,119504535,119505854,119507603,119511046,119519044	119501253,119502655,119504599,119505932,119507704,119511134,119519099	0.615385
smooth_muscle_cell_derived_from_H9	chr10	103746763	103746772	103746766	+	High_confidence	3	3	10	0.349583	2.646439	chr10	103746609	103747070	LINE|L2|L2b	+	chr10	103746778	103755409	SH3PXD2A-AS1|NR_038940.1	+	103746778,103749781,103753843	103747096,103749920,103755409	0.500000
smooth_muscle_cell_derived_from_H9	chr12	132760736	132760737	132760736	-	RAMPAGE_only	10	10	11	0.384542	2.721928	chr12	132760287	132761044	LTR|ERVL|MER21B	-	chr12	132725667	132761813	ANKLE2|ENST00000539605.5	-	132725667,132728031,132729678,132734384,132735405,132736892,132741418,132743153,132747831,132748137,132750642,132754674	132727443,132728163,132730270,132734575,132735512,132737065,132741485,132743276,132748020,132748331,132750849,132761813	0.727273
smooth_muscle_cell_derived_from_H9	chr7	109647267	109647268	109647267	-	High_confidence	119	122	130	4.544583	4.956563	chr7	109647163	109647640	LTR|ERV1|LTR7	-	chr7	109645322	109647251	MSTRG.54545.1	-	109645322,109647017	109645499,109647251	0.576923
smooth_muscle_cell_derived_from_H9	chr15	85330227	85330259	85330237	-	RAMPAGE_only	12	13	35	1.223542	4.536670	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.685714
smooth_muscle_cell_derived_from_H9	chr10	32992440	32992443	32992440	-	High_confidence	9	10	15	0.524375	3.240224	chr10	32992250	32992639	LTR|ERVL-MaLR|THE1B	-	chr10	32928211	32992463	ITGB1|ENST00000534049.5	-	32928211,32929821,32932514,32935491,32992330	32928264,32930044,32932600,32935558,32992463	1.000000
smooth_muscle_cell_derived_from_H9	chr2	240022172	240022280	240022172	-	RAMPAGE_only	10	10	82	2.866583	3.421276	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.975610
smooth_muscle_cell_derived_from_H9	chr3	27821492	27821597	27821492	+	RAMPAGE_only	18	20	154	5.383583	5.221473	chr3	27815983	27821983	LINE|L1|L1PA7	-	chr3	27802761	27860327	LINC01980|ENST00000425195.6	+	27802761,27824649,27848700,27860086	27802850,27824748,27848764,27860327	0.980519
smooth_muscle_cell_derived_from_H9	chr3	110969944	110969976	110969966	-	High_confidence	18	19	92	3.216166	5.395405	chr3	110969731	110970304	LTR|ERV1|LTR10C	-	chr3	110752778	110969827	MSTRG.39434.2	-	110752778,110788562,110893137,110969501	110788541,110892603,110893830,110969827	0.826087
smooth_muscle_cell_derived_from_H9	chr1	116390239	116390247	116390241	+	RAMPAGE_only	3	5	11	0.384542	2.521928	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116387302	116404774	MSTRG.2782.7	+	116387302,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401553,116403883,116404415	116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401260,116401655,116403975,116404774	0.909091
smooth_muscle_cell_derived_from_H9	chr4	119279739	119279743	119279742	+	RAMPAGE_only	8	8	17	0.594292	2.696199	chr4	119274113	119280127	LINE|L1|L1PA2	-	chr4	119239639	119294638	USP53|ENST00000509769.5	+	119239639,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119266299,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119266333,119267482,119268420,119269837,119272034,119273708,119291261,119294638	1.000000
smooth_muscle_cell_derived_from_H9	chr4	98891320	98891330	98891329	-	High_confidence	6	6	10	0.349583	2.646439	chr4	98891322	98891802	LINE|L1|L1MB2	+	chr4	98881009	98890898	EIF4E|ENST00000505194.5	-	98881009,98884921,98887078,98887888,98890786	98881142,98885061,98887192,98887952,98890898	0.800000
smooth_muscle_cell_derived_from_H9	chr14	73463610	73463632	73463624	-	High_confidence	97	98	211	7.376208	6.513977	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73275672	73462690	MSTRG.17726.10	-	73275672,73282358,73284080,73287109,73292733,73297210,73323129,73355625,73409936,73462528	73277293,73282505,73284374,73287314,73292874,73297285,73323204,73355766,73410068,73462690	0.511848
smooth_muscle_cell_derived_from_H9	chr13	110179297	110179398	110179297	-	RAMPAGE_only	95	98	1208	42.229663	6.623491	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	0.990066
smooth_muscle_cell_derived_from_H9	chr3	29280853	29280899	29280853	-	High_confidence	6	6	24	0.839000	4.220176	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.666667
smooth_muscle_cell_derived_from_H9	chr17	82076525	82076526	82076525	-	RAMPAGE_only	12	12	12	0.419500	2.855389	chr17	82076254	82076887	LINE|L1|L1MEc	-	chr17	81511345	81523847	ACTG1|ENST00000575994.5	-	81511345,81511902,81512231,81523641	81511626,81512142,81512360,81523847	1.000000
smooth_muscle_cell_derived_from_H9	chr14	100907731	100907732	100907731	-	RAMPAGE_only	46	47	56	1.957667	4.700888	chr14	100907475	100907696	SINE|MIR|MIRb	-	chr14	100879752	100903722	RTL1|ENST00000649591.1	-	100879752,100893443,100903290,100903604	100884874,100893505,100903386,100903722	0.982143
smooth_muscle_cell_derived_from_H9	chr5	151687237	151687251	151687244	-	High_confidence	58	64	184	6.432333	5.559324	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687295	MSTRG.47754.1	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687295	0.891304
smooth_muscle_cell_derived_from_H9	chr16	70590296	70590329	70590319	+	RAMPAGE_only	11	11	27	0.943875	3.825252	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.629630
smooth_muscle_cell_derived_from_H9	chr7	158863386	158863401	158863386	+	RAMPAGE_only	6	6	31	1.083708	4.478232	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.806452
smooth_muscle_cell_derived_from_H9	chr2	113625622	113625700	113625640	-	RAMPAGE_only	8	8	38	1.328417	3.759487	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	0.973684
smooth_muscle_cell_derived_from_H9	chr6	112880328	112880361	112880343	+	High_confidence	14	15	51	1.782875	4.685939	chr6	112879825	112880495	LTR|ERV1|MER52C	-	chr6	112880169	112937647	MSTRG.50659.1	+	112880169,112883040,112937593	112880838,112883111,112937647	0.588235
smooth_muscle_cell_derived_from_H9	chr7	45940770	45940815	45940779	+	High_confidence	34	34	179	6.257541	5.673622	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45940443	45999322	MSTRG.53275.3	+	45940443,45977576,45978349,45979908,45990532,45994289,45998843	45940880,45977678,45978468,45980027,45991077,45994392,45999322	0.737430
smooth_muscle_cell_derived_from_H9	chr17	17686056	17686058	17686057	+	RAMPAGE_only	6	10	15	0.524375	2.950212	chr17	17685599	17686175	LINE|L2|L2b	+	chr17	17682494	17793143	RAI1|ENST00000471135.2	+	17682494,17683545,17724027,17792932	17682563,17683703,17724159,17793143	0.866667
smooth_muscle_cell_derived_from_H9	chr4	89681503	89681506	89681504	+	High_confidence	233	307	419	14.647540	6.634459	chr4	89681260	89681677	LTR|ERV1|MER61C	+	chr4	89681522	89726752	MSTRG.43098.7	+	89681522,89691284,89719825,89720272,89726383	89681684,89691405,89720073,89720432,89726752	0.584726
smooth_muscle_cell_derived_from_H9	chr6	114011227	114011230	114011229	-	High_confidence	15	25	25	0.873958	3.643074	chr6	114011169	114011436	LTR|ERV1|MER51B	-	chr6	113945379	114011308	MSTRG.50718.6	-	113945379,113946007,113948978,113949167,113953276,113956012,113956618,113958648,113959905,113962366,114000000,114009990,114011130	113945470,113946148,113949087,113949260,113953418,113956151,113956693,113958766,113960018,113962394,114000099,114010117,114011308	0.960000
smooth_muscle_cell_derived_from_H9	chr5	149404175	149404196	149404195	-	High_confidence	3	3	9	0.314625	2.503258	chr5	149404176	149404312	LINE|CR1|X7C_LINE	+	chr5	149374266	149404202	IL17B|NM_001317987.1	-	149374266,149376735,149404107	149374600,149377025,149404202	1.000000
smooth_muscle_cell_derived_from_H9	chr1	187641241	187641288	187641286	+	High_confidence	66	95	271	9.473708	6.582421	chr1	187641123	187641443	LTR|ERV1|MER61A	+	chr1	187641284	187686622	ERVMER61-1|ENST00000643044.1	+	187641284,187641617,187685703	187641481,187641814,187686622	0.612546
smooth_muscle_cell_derived_from_H9	chr13	77975518	77975553	77975518	-	High_confidence	5	5	21	0.734125	3.005315	chr13	77975208	77975612	LTR|ERV1|HERVE_a-int	-	chr13	77895480	77975529	EDNRB|ENST00000646948.1	-	77895480,77899858,77900520,77901057,77903155,77903494,77918090,77975346	77898334,77899967,77900654,77901207,77903360,77903607,77918624,77975529	0.809524
smooth_muscle_cell_derived_from_H9	chr5	139364682	139364720	139364682	+	RAMPAGE_only	5	6	24	0.839000	3.355389	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342441	139369720	PAIP2|ENST00000394795.6	+	139342441,139363758,139364563,139368732	139343406,139363922,139364743,139369720	0.916667
smooth_muscle_cell_derived_from_H9	chr12	108330159	108330205	108330191	-	RAMPAGE_only	4	4	13	0.454458	2.855389	chr12	108329939	108330453	LTR|ERVL-MaLR|MLT1H	+	chr12	108291670	108339313	MSTRG.13904.4	-	108291670,108292209,108293588,108339026	108292077,108292959,108293664,108339313	0.923077
smooth_muscle_cell_derived_from_H9	chr11	108518621	108518672	108518651	-	RAMPAGE_only	4	5	16	0.559333	3.500000	chr11	108518648	108519199	LTR|ERV1|MER41A	+	chr11	108513406	108538187	EXPH5|ENST00000524840.2	-	108513406,108518234,108528135,108537962	108514875,108518373,108528184,108538187	0.812500
smooth_muscle_cell_derived_from_H9	chr12	119179186	119179257	119179256	+	High_confidence	9	9	41	1.433292	3.118885	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.975610
smooth_muscle_cell_derived_from_H9	chr19	48868595	48868631	48868613	-	High_confidence	499	587	2543	88.899035	7.493286	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.996461
smooth_muscle_cell_derived_from_H9	chr5	150778538	150778567	150778538	+	High_confidence	9	10	29	1.013792	4.254196	chr5	150778483	150778644	SINE|MIR|MIR3	-	chr5	150778804	150796734	SMIM3|ENST00000648745.1	+	150778804,150782473,150795429	150778972,150782590,150796734	0.931034
smooth_muscle_cell_derived_from_H9	chr3	121731451	121731458	121731457	-	RAMPAGE_only	3	4	13	0.454458	2.918296	chr3	121731351	121731515	SINE|Alu|AluSc8	-	chr3	121663202	121730216	MSTRG.39874.2	-	121663202,121664925,121667475,121668060,121669196,121676892,121677284,121681686,121690669,121693740,121699811,121702480,121714860,121716736,121718387,121726912,121729187,121729864	121664614,121665031,121667610,121668158,121669355,121677030,121677450,121681865,121692581,121698929,121699885,121702595,121714976,121717139,121722378,121727041,121729340,121730216	0.769231
smooth_muscle_cell_derived_from_H9	chr2	68679571	68679583	68679582	+	High_confidence	6	6	11	0.384542	2.550341	chr2	68677861	68680074	LINE|L1|L1PA3	-	chr2	68679845	68787922	ARHGAP25|ENST00000481684.5	+	68679845,68710504,68757637,68775220,68782232,68787839	68680095,68710698,68757730,68775420,68782320,68787922	0.727273
smooth_muscle_cell_derived_from_H9	chr2	118854746	118854747	118854746	-	High_confidence	6	6	6	0.209750	2.584963	chr2	118854605	118854713	SINE|MIR|MIR3	-	chr2	118853371	118854090	MSTRG.31259.1	-	118853371,118854012	118853699,118854090	0.666667
smooth_muscle_cell_derived_from_H9	chr13	43055406	43055412	43055406	+	RAMPAGE_only	488	541	936	32.720997	6.369964	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43059514	43113205	MSTRG.14942.3	+	43059514,43065685,43068929,43078611,43085767,43107177	43062295,43065737,43069003,43078688,43085838,43113205	0.853632
smooth_muscle_cell_derived_from_H9	chr10	5551108	5551133	5551132	-	RAMPAGE_only	10	11	32	1.118667	4.304229	chr10	5550935	5551240	LTR|ERVL-MaLR|MLT1B	-	chr10	5514243	5526246	CALML3-AS1|NR_120497.1	-	5514243,5521915,5526132	5517512,5522129,5526246	0.500000
smooth_muscle_cell_derived_from_H9	chr21	44962734	44962791	44962790	+	RAMPAGE_only	5	5	26	0.908917	3.748329	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44958245	44976973	FAM207A|ENST00000479127.5	+	44958245,44960099,44967033,44973196,44976679	44958424,44960168,44967181,44973265,44976973	1.000000
smooth_muscle_cell_derived_from_H9	chrX	19647819	19647820	19647819	-	High_confidence	5	5	7	0.244708	2.521641	chrX	19647773	19647939	DNA|hAT-Charlie|MER5A	+	chrX	19588683	19647768	MSTRG.61722.6	-	19588683,19592066,19594948,19607937,19631863,19645399,19647477	19588802,19592147,19595000,19608045,19631958,19645475,19647768	1.000000
smooth_muscle_cell_derived_from_H9	chrX	131579169	131579170	131579169	-	High_confidence	6	6	8	0.279667	2.521641	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.625000
smooth_muscle_cell_derived_from_H9	chr2	156254917	156254963	156254962	-	High_confidence	18	18	113	3.950291	6.022489	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156020539	156254918	LINC01876|ENST00000638047.1	-	156020539,156022671,156024484,156150484,156205381,156227966,156254777	156021899,156022817,156024607,156150602,156205438,156228004,156254918	0.504425
smooth_muscle_cell_derived_from_H9	chr7	66292496	66292497	66292496	+	RAMPAGE_only	10	10	15	0.524375	3.807355	chr7	66286853	66292884	LINE|L1|L1HS	-	chr7	66996804	67239520	TYW1|NM_018264.3	+	66996804,66998064,66998816,67009582,67014366,67017852,67024899,67049948,67055834,67067284,67083429,67098540,67117482,67183125,67195169,67238307	66996982,66998195,66998954,67009684,67014561,67018143,67025022,67050066,67055887,67067403,67083539,67098718,67117618,67183236,67195337,67239520	0.933333
smooth_muscle_cell_derived_from_H9	chr1	235670243	235670339	235670321	+	High_confidence	142	159	577	20.170957	7.387917	chr1	235670103	235670445	LTR|ERV1|LTR10B2	+	chr1	235670249	235711139	MSTRG.5064.1	+	235670249,235710642	235670650,235711139	0.772964
smooth_muscle_cell_derived_from_H9	chr16	65232691	65232740	65232716	+	High_confidence	4	4	20	0.699167	3.260828	chr16	65232144	65234891	LTR|ERV1|HERVH-int	-	chr16	65232062	65393675	MSTRG.21951.2	+	65232062,65371096,65392993	65233403,65371185,65393675	0.800000
smooth_muscle_cell_derived_from_H9	chr6	111781037	111781051	111781050	-	High_confidence	4	6	14	0.489417	2.896292	chr6	111781009	111781219	SINE|MIR|MIR	+	chr6	111707929	111781080	FYN|ENST00000524310.5	-	111707929,111714346,111719804,111780565,111781055	111708020,111714443,111720062,111780635,111781080	0.571429
smooth_muscle_cell_derived_from_H9	chr8	83912604	83912609	83912608	+	High_confidence	7	8	12	0.419500	2.855389	chr8	83912425	83912831	LTR|ERVK|LTR14B	+	chr8	83912682	83980150	MSTRG.57097.3	+	83912682,83967327,83978571,83979924	83912835,83976926,83978766,83980150	0.583333
smooth_muscle_cell_derived_from_H9	chr14	44428548	44428556	44428548	-	RAMPAGE_only	5	5	10	0.349583	2.721928	chr14	44428519	44429009	LTR|ERV1|LTR19A	+	chr14	44392541	44393716	AL161752.1|ENST00000557506.1	-	44392541,44393617	44392690,44393716	0.900000
smooth_muscle_cell_derived_from_H9	chr2	1053151	1053168	1053163	+	High_confidence	33	37	105	3.670625	4.451043	chr2	1052814	1053206	LINE|L1|L1M5	-	chr2	1053374	1053635	MSTRG.29084.1	+	1053374	1053635	0.761905
smooth_muscle_cell_derived_from_H9	chr11	33696930	33697016	33696930	-	High_confidence	5	5	34	1.188583	4.594672	chr11	33696789	33697100	LINE|L2|L2a	+	chr11	33665219	33696701	AL049629.1|ENST00000534431.1	-	33665219,33669523,33670914,33696585	33665564,33669645,33670979,33696701	0.676471
smooth_muscle_cell_derived_from_H9	chr4	177444974	177444986	177444974	+	High_confidence	5	5	10	0.349583	2.921928	chr4	177444910	177445732	LTR|ERV1|LTR1A2	+	chr4	177444978	177677126	AC078881.1|ENST00000507023.1	+	177444978,177451474,177593471,177596460,177623658,177675836	177445443,177451590,177593546,177596531,177623802,177677126	0.900000
smooth_muscle_cell_derived_from_H9	chr9	22217359	22217402	22217378	+	RAMPAGE_only	3	3	14	0.489417	2.896292	chr9	22216506	22217927	LINE|L1|L1M1	+	chr9	22645142	22824213	MSTRG.59324.1	+	22645142,22674442,22682609,22723308,22767174,22768330,22820737	22646296,22674643,22682713,22723430,22767266,22768403,22824213	0.714286
smooth_muscle_cell_derived_from_H9	chr1	167863578	167863607	167863599	+	RAMPAGE_only	9	12	29	1.013792	4.185230	chr1	167863572	167864915	LTR|ERV1|Harlequin-int	+	chr1	167935782	167987547	DCAF6|ENST00000450548.5	+	167935782,167951799,167966628,167974829,167987494	167936112,167951861,167966721,167975015,167987547	0.758621
smooth_muscle_cell_derived_from_H9	chr1	243269717	243269735	243269734	+	RAMPAGE_only	3	3	10	0.349583	2.947703	chr1	243269606	243269808	LINE|L1|L1MDb	-	chr1	243256055	243500092	SDCCAG8|ENST00000366541.7	+	243256055,243270104,243270977,243274542,243286271,243293090,243304712,243307988,243316754,243330539,243341038,243344214,243378720,243415701,243417967,243426426,243489013,243499755	243256240,243270257,243271063,243274656,243286397,243293219,243304777,243308177,243316893,243330692,243341173,243344331,243378863,243415829,243418076,243426558,243489140,243500092	0.600000
smooth_muscle_cell_derived_from_H9	chr4	99020134	99020150	99020134	-	RAMPAGE_only	4	4	17	0.594292	3.750000	chr4	99013919	99021508	LTR|ERV1|HERVIP10B3-int	-	chr4	99013419	99021645	MSTRG.43179.3	-	99013419,99017293,99021303	99016142,99020149,99021645	0.941176
smooth_muscle_cell_derived_from_H9	chr5	150125473	150125563	150125473	-	RAMPAGE_only	15	19	148	5.173833	6.030942	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.932432
smooth_muscle_cell_derived_from_H9	chr10	56155120	56155164	56155143	-	High_confidence	34	40	193	6.746958	5.108768	chr10	56154938	56156388	LTR|ERV1|LTR12C	+	chr10	56154720	56154990	MSTRG.6358.1	-	56154720	56154990	0.777202
smooth_muscle_cell_derived_from_H9	chr14	68882879	68883044	68882879	-	High_confidence	58	61	492	17.199499	6.366510	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.941057
smooth_muscle_cell_derived_from_H9	chr5	93504673	93504674	93504673	-	High_confidence	155	162	220	7.690833	5.861695	chr5	93504513	93504869	LTR|ERVL-MaLR|THE1A	-	chr5	93411232	93504764	MSTRG.46376.10	-	93411232,93496056,93500956,93504591	93411509,93496103,93501160,93504764	0.654545
smooth_muscle_cell_derived_from_H9	chr2	181954484	181954524	181954491	+	High_confidence	11	11	64	2.237333	4.752908	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.734375
smooth_muscle_cell_derived_from_H9	chr3	50816069	50816090	50816069	+	RAMPAGE_only	10	11	33	1.153625	4.304229	chr3	50815749	50816183	LTR|ERV1|LTR54B	-	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.787879
smooth_muscle_cell_derived_from_H9	chr5	151669675	151669772	151669675	-	RAMPAGE_only	125	136	1048	36.636330	6.417457	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.985687
smooth_muscle_cell_derived_from_H9	chr21	46142707	46142708	46142707	-	High_confidence	135	137	166	5.803083	5.137064	chr21	46142201	46143045	LTR|ERV1|LTR12	-	chr21	46136261	46142741	FTCD|ENST00000460011.5	-	46136261,46136914,46137238,46138507,46142108	46136494,46137073,46137334,46138646,46142741	0.927711
smooth_muscle_cell_derived_from_H9	chr21	38760653	38760706	38760688	+	RAMPAGE_only	93	136	430	15.032082	6.602463	chr21	38760447	38760810	LTR|ERVL-MaLR|MLT1B	+	chr21	38772932	38773404	MSTRG.35916.1	+	38772932	38773404	0.537209
smooth_muscle_cell_derived_from_H9	chr5	70401406	70401479	70401467	+	High_confidence	27	30	180	6.292499	5.615149	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70401428	70447526	MSTRG.45929.1	+	70401428,70420248,70421279,70421736,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70401668,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.994444
smooth_muscle_cell_derived_from_H9	chr19	16081609	16081610	16081609	+	High_confidence	4	4	6	0.209750	2.584963	chr19	16081397	16081692	SINE|Alu|AluSc	-	chr19	16081722	16093581	TPM4|ENST00000592138.5	+	16081722,16086422,16088026,16089044,16093535	16082046,16086540,16088097,16089120,16093581	0.833333
smooth_muscle_cell_derived_from_H9	chr16	30096847	30096904	30096882	-	High_confidence	14	16	111	3.880375	5.420134	chr16	30096875	30097207	LTR|ERV1|LTR10B2	+	chr16	30092348	30096912	MSTRG.21542.5	-	30092348,30094788,30095102,30095251,30096096,30096615	30092799,30094897,30095146,30095434,30096511,30096912	0.684685
smooth_muscle_cell_derived_from_H9	chr4	99810672	99810676	99810675	+	RAMPAGE_only	8	8	15	0.524375	3.324863	chr4	99810513	99810839	LTR|ERVL-MaLR|MLT1A0	+	chr4	99816823	99870190	DAPP1|NM_014395.2	+	99816823,99835622,99840288,99853217,99861577,99863009,99863769,99866033,99868116	99817014,99835745,99840422,99853348,99861625,99863072,99863855,99866121,99870190	0.866667
smooth_muscle_cell_derived_from_H9	chr3	110834676	110834840	110834839	-	RAMPAGE_only	11	12	75	2.621875	5.208428	chr3	110830864	110836421	LINE|L1|L1PA7	-	chr3	110819784	110893476	MSTRG.39434.5	-	110819784,110889425,110893137	110889209,110892603,110893476	1.000000
smooth_muscle_cell_derived_from_H9	chr12	91179044	91179075	91179074	-	High_confidence	9	9	32	1.118667	4.304229	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.937500
smooth_muscle_cell_derived_from_H9	chr10	4678213	4678248	4678247	-	High_confidence	3	3	12	0.419500	2.663533	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.500000
smooth_muscle_cell_derived_from_H9	chr3	194486575	194486632	194486575	-	High_confidence	2	2	10	0.349583	3.121928	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	1.000000
smooth_muscle_cell_derived_from_H9	chr17	28234009	28234035	28234026	-	RAMPAGE_only	3	3	20	0.699167	3.484184	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	1.000000
smooth_muscle_cell_derived_from_H9	chr4	11066429	11066485	11066457	+	High_confidence	9	9	54	1.887750	4.505185	chr4	11060915	11066938	LINE|L1|L1PA2	-	chr4	11066459	11066932	MSTRG.41858.1	+	11066459	11066932	0.555556
smooth_muscle_cell_derived_from_H9	chr9	72363490	72363503	72363490	-	High_confidence	5	6	10	0.349583	2.947703	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.800000
smooth_muscle_cell_derived_from_H9	chr4	99906528	99906573	99906528	-	High_confidence	6	6	28	0.978833	3.796218	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.928571
smooth_muscle_cell_derived_from_H9	chr19	49539126	49539166	49539126	+	RAMPAGE_only	10	12	54	1.887750	4.680089	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49542601	49543633	RCN3|ENST00000593483.1	+	49542601,49543105	49542668,49543633	0.611111
smooth_muscle_cell_derived_from_H9	chr5	58937339	58937340	58937339	+	RAMPAGE_only	13	13	15	0.524375	3.182006	chr5	58937065	58937991	LINE|L1|L1M2	-	chr5	59039760	59063503	AC092343.1|ENST00000500224.2	+	59039760,59063084	59040070,59063503	0.866667
smooth_muscle_cell_derived_from_H9	chr4	99021358	99021465	99021403	-	High_confidence	5	5	26	0.908917	4.132944	chr4	99013919	99021508	LTR|ERV1|HERVIP10B3-int	-	chr4	99013419	99021645	MSTRG.43179.3	-	99013419,99017293,99021303	99016142,99020149,99021645	0.884615
smooth_muscle_cell_derived_from_H9	chr9	22217090	22217202	22217100	+	RAMPAGE_only	117	149	723	25.274873	7.558304	chr9	22216506	22217927	LINE|L1|L1M1	+	chr9	22645142	22824213	MSTRG.59324.1	+	22645142,22674442,22682609,22723308,22767174,22768330,22820737	22646296,22674643,22682713,22723430,22767266,22768403,22824213	0.578147
smooth_muscle_cell_derived_from_H9	chr14	68845412	68845445	68845444	-	RAMPAGE_only	5	5	10	0.349583	2.503258	chr14	68845237	68845533	SINE|Alu|AluSq2	+	chr14	68834143	68836843	MSTRG.17493.1	-	68834143	68836843	0.500000
smooth_muscle_cell_derived_from_H9	chr1	246356997	246357073	246357021	-	High_confidence	9	14	63	2.202375	4.627143	chr1	246355513	246357091	LINE|L1|L1PB1	+	chr1	245863808	246357108	MSTRG.5268.15	-	245863808,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246356419	245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246357108	0.904762
smooth_muscle_cell_derived_from_H9	chr2	55268684	55268696	55268695	-	High_confidence	3	3	8	0.279667	2.521641	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	0.500000
smooth_muscle_cell_derived_from_H9	chr15	79389299	79389302	79389301	+	RAMPAGE_only	5	8	10	0.349583	2.947703	chr15	79388416	79392579	LINE|L1|L1PB1	-	chr15	79311144	79427432	TMED3|ENST00000424155.6	+	79311144,79313756,79411399	79311417,79314005,79427432	0.800000
smooth_muscle_cell_derived_from_H9	chr9	68975842	68975843	68975842	-	RAMPAGE_only	17	20	24	0.839000	4.004886	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68971384	68972416	MSTRG.59637.1	-	68971384	68972416	0.708333
smooth_muscle_cell_derived_from_H9	chr12	26914484	26914559	26914558	-	RAMPAGE_only	7	7	32	1.118667	3.577747	chr12	26914520	26914587	LINE|RTE-BovB|MamRTE1	+	chr12	26905180	26917734	INTS13|ENST00000538155.5	-	26905180,26906301,26911177,26913456,26913973,26916001,26917351,26917643	26905536,26906437,26911317,26913687,26914128,26916180,26917441,26917734	0.937500
smooth_muscle_cell_derived_from_H9	chr3	64462314	64462375	64462371	-	High_confidence	16	16	78	2.726750	5.123821	chr3	64462250	64462410	LINE|CR1|L3	-	chr3	64453537	64462464	MSTRG.38738.1	-	64453537,64459289,64462267	64454765,64459404,64462464	0.910256
smooth_muscle_cell_derived_from_H9	chr3	11225885	11225913	11225909	-	High_confidence	19	21	69	2.412125	4.991443	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.739130
smooth_muscle_cell_derived_from_H9	chr2	215410381	215410409	215410381	-	RAMPAGE_only	2	2	11	0.384542	2.721928	chr2	215410339	215410486	SINE|MIR|MIRc	-	chr2	215360439	215436067	FN1|ENST00000421182.5	-	215360439,215361968,215364878,215365504,215367862,215370293,215371908,215372108,215373321,215375213,215375628,215376497,215378174,215379129,215382211,215383327,215384019,215384859,215386688,215388211,215391631,215394527,215397136,215397679,215399256,215404388,215406237,215407126,215408107,215408297,215409562,215409933,215414836,215419241,215420672,215422090,215423349,215424145,215425093,215428179,215430714,215431832,215433323,215434695,215435654	215361626,215362079,215364985,215365630,215368027,215370432,215372015,215372300,215373411,215375393,215375718,215376674,215378262,215379317,215382325,215383483,215384184,215384976,215386958,215388301,215391814,215394719,215397223,215397848,215399351,215404655,215406510,215407321,215408197,215408426,215409739,215410114,215414958,215419385,215420801,215422243,215423526,215424325,215425285,215428338,215430852,215431964,215433461,215434824,215436067	0.636364
smooth_muscle_cell_derived_from_H9	chr6	109250785	109250807	109250805	+	RAMPAGE_only	12	16	42	1.468250	4.292897	chr6	109245218	109251251	LINE|L1|L1PA2	-	chr6	109236613	109270514	LOC100996634|NM_001277339.1	+	109236613,109239327,109242178,109254447,109255370,109257545,109261888,109264800,109267807,109270038	109236780,109239520,109242306,109254648,109255492,109257774,109262091,109264956,109267901,109270514	0.690476
smooth_muscle_cell_derived_from_H9	chr5	176411449	176411459	176411458	-	RAMPAGE_only	26	31	54	1.887750	4.588337	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.981481
smooth_muscle_cell_derived_from_H9	chr1	209429204	209429273	209429204	+	High_confidence	15	20	112	3.915333	5.084717	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.991071
smooth_muscle_cell_derived_from_H9	chr12	123390725	123390738	123390725	+	High_confidence	4	5	14	0.489417	2.842371	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	1.000000
smooth_muscle_cell_derived_from_H9	chr1	235589049	235589070	235589064	-	High_confidence	12	12	38	1.328417	3.988077	chr1	235589032	235589593	LTR|ERVL|LTR18B	+	chr1	235551753	235588959	GNG4|ENST00000484517.2	-	235551753,235583739,235588868	235552237,235583848,235588959	0.842105
smooth_muscle_cell_derived_from_H9	chr11	65949204	65949213	65949206	+	RAMPAGE_only	5	9	18	0.629250	3.852169	chr11	65949001	65949212	SINE|Alu|AluJo	+	chr11	65945643	65959963	TSGA10IP|NM_152762.2	+	65945643,65946879,65947109,65948000,65953566,65958882,65959189,65959816	65945822,65947016,65947828,65948148,65953737,65958982,65959314,65959963	0.888889
smooth_muscle_cell_derived_from_H9	chr3	110969835	110969836	110969835	-	High_confidence	11876	12293	14353	501.756918	8.032558	chr3	110969731	110970304	LTR|ERV1|LTR10C	-	chr3	110752778	110969827	MSTRG.39434.2	-	110752778,110788562,110893137,110969501	110788541,110892603,110893830,110969827	0.548317
smooth_muscle_cell_derived_from_H9	chr9	72295108	72295109	72295108	+	RAMPAGE_only	6	6	6	0.209750	2.584963	chr9	72295156	72295467	SINE|Alu|AluJb	+	chr9	73151730	73170393	ANXA1|NM_000700.2	+	73151730,73158521,73158694,73159328,73160262,73160802,73162781,73163475,73165115,73166096,73167496,73169031,73170050	73151924,73158601,73158803,73159423,73160376,73160893,73162861,73163532,73165209,73166192,73167555,73169154,73170393	1.000000
smooth_muscle_cell_derived_from_H9	chr9	39810005	39810058	39810033	-	High_confidence	6	6	22	0.769083	2.753919	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.863636
smooth_muscle_cell_derived_from_H9	chr2	71417037	71417058	71417037	+	RAMPAGE_only	5	5	18	0.629250	3.641604	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.944444
smooth_muscle_cell_derived_from_H9	chr8	57746128	57746129	57746128	+	High_confidence	15	16	16	0.559333	3.240224	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.937500
smooth_muscle_cell_derived_from_H9	chr8	85839704	85839705	85839704	+	High_confidence	17	17	19	0.664208	3.681881	chr8	85839524	85839864	LTR|ERVL-MaLR|THE1B	+	chr8	85839704	85908613	AC100801.1|ENST00000517368.1	+	85839704,85885934,85889578,85908312	85839785,85885994,85889653,85908613	0.526316
smooth_muscle_cell_derived_from_H9	chr14	47795117	47795134	47795133	-	RAMPAGE_only	9	10	20	0.699167	2.539354	chr14	47794965	47800647	LINE|L1|L1PA2	+	chr14	47726951	47728138	MSTRG.16994.1	-	47726951	47728138	0.550000
smooth_muscle_cell_derived_from_H9	chr2	130428519	130428524	130428519	-	High_confidence	8	8	17	0.594292	3.572469	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046259.1	-	130416749,130419070,130425090,130425913,130427703	130418298,130419245,130425158,130426038,130428546	1.000000
smooth_muscle_cell_derived_from_H9	chr3	172307460	172307491	172307490	+	RAMPAGE_only	3	3	17	0.594292	3.499228	chr3	172307537	172307684	SINE|Alu|AluJr	+	chr3	172329073	172335814	FNDC3B|ENST00000494000.1	+	172329073,172333088,172334943	172330715,172333175,172335814	0.588235
smooth_muscle_cell_derived_from_H9	chr1	10282503	10282533	10282532	+	RAMPAGE_only	3	3	8	0.279667	2.500000	chr1	10282562	10282741	LINE|CR1|L3	+	chr1	10232328	10381596	KIF1B|ENST00000620295.2	+	10232328,10256246,10258492,10261904,10267379,10268151,10271501,10272240,10273013,10275427,10276320,10277985,10282321,10291081,10292046,10295085,10295659,10296581,10296896,10297173,10320042,10321708,10323883,10324757,10326110,10334519,10336656,10337073,10337370,10339768,10342049,10343231,10345844,10347760,10348648,10352630,10360928,10361691,10363282,10365099,10365408,10368466,10371140,10374315,10374853,10375254,10378338	10232434,10256323,10258672,10261970,10267558,10268263,10271579,10272306,10273031,10275503,10276399,10278128,10282533,10291161,10292122,10295165,10295766,10296665,10297077,10297246,10320136,10321857,10324062,10324895,10326359,10334638,10336742,10337203,10337533,10339859,10342168,10343287,10345953,10347827,10348733,10352736,10361043,10361825,10363344,10365245,10365648,10368538,10371262,10374465,10375046,10375373,10381596	1.000000
smooth_muscle_cell_derived_from_H9	chr7	10973327	10973333	10973327	+	High_confidence	2	3	8	0.279667	2.807355	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973554	11169630	MSTRG.52229.2	+	10973554,10974246,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11111349,11169415	10973634,10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11111467,11169630	0.625000
smooth_muscle_cell_derived_from_H9	chr10	65570509	65570522	65570519	+	High_confidence	25	37	126	4.404750	5.828879	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.761905
smooth_muscle_cell_derived_from_H9	chr17	10117246	10117248	10117247	-	RAMPAGE_only	11	20	24	0.839000	3.788755	chr17	10116966	10117450	LTR|ERVL-MaLR|MLT1D	-	chr17	9910608	10114553	GAS7|ENST00000323816.8	-	9910608,9918000,9919625,9925475,9926640,9934165,9940125,9943120,9946893,9959201,9969676,9981803,10019776,10039741,10114441	9917341,9918099,9919705,9925599,9926769,9934244,9940200,9943236,9946983,9959255,9969762,9981884,10019897,10039795,10114553	0.791667
smooth_muscle_cell_derived_from_H9	chr4	74449053	74449078	74449053	+	RAMPAGE_only	4	5	13	0.454458	2.792481	chr4	74449070	74449168	LINE|L1|L1MEf	+	chr4	74445687	74455005	MSTRG.42817.3	+	74445687,74446533,74449046,74450379,74452543,74454758	74445712,74446782,74449248,74450532,74452655,74455005	0.923077
smooth_muscle_cell_derived_from_H9	chr20	8114426	8114451	8114430	+	High_confidence	5	5	15	0.524375	3.235926	chr20	8108866	8114917	LINE|L1|L1PA3	-	chr20	8114452	8788521	PLCB1|ENST00000625874.2	+	8114452,8150293,8371381,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8114573,8150371,8371450,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788521	0.533333
smooth_muscle_cell_derived_from_H9	chr19	44914321	44914425	44914424	+	High_confidence	13	14	104	3.635666	4.705135	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.913462
smooth_muscle_cell_derived_from_H9	chr12	53464799	53464834	53464799	+	RAMPAGE_only	2	4	14	0.489417	3.324863	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479821	MSTRG.12670.38	+	53462513,53464759,53467220,53468776,53471637,53479405	53462567,53465031,53467293,53468832,53471807,53479821	0.928571
smooth_muscle_cell_derived_from_H9	chrX	2964542	2964562	2964550	-	High_confidence	6	6	20	0.699167	2.746439	chrX	2964489	2964607	SINE|Alu|AluJb	-	chrX	2934631	2964453	ARSE|NM_001282628.1	-	2934631,2936741,2938094,2943064,2945997,2949303,2953142,2955415,2958273,2959602,2960377,2964223	2935190,2936863,2938257,2943199,2946134,2949727,2953265,2955537,2958435,2959888,2960420,2964453	0.950000
smooth_muscle_cell_derived_from_H9	chr1	147760601	147760609	147760601	-	High_confidence	11	11	24	0.839000	3.282416	chr1	147760317	147760652	LINE|L2|L2c	+	chr1	147756198	147760606	GJA5|ENST00000579774.2	-	147756198,147760498	147759271,147760606	0.958333
smooth_muscle_cell_derived_from_H9	chr1	159005961	159005962	159005961	+	High_confidence	43	46	61	2.132458	5.137732	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.672131
smooth_muscle_cell_derived_from_H9	chr3	33838237	33838281	33838237	+	RAMPAGE_only	5	5	26	0.908917	3.886842	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.653846
smooth_muscle_cell_derived_from_H9	chr7	143852452	143852685	143852452	-	RAMPAGE_only	8	8	106	3.705583	5.354370	chr7	143852406	143853075	LINE|L1|L1M6B	-	chr7	143851374	143885331	MSTRG.55360.2	-	143851374,143857099,143858823,143860207,143861094,143862415,143862801,143875988,143881922,143885209	143854142,143857350,143859161,143860447,143861308,143862513,143863796,143876622,143882099,143885331	0.990566
smooth_muscle_cell_derived_from_H9	chr6	118574394	118574397	118574394	+	High_confidence	8206	8564	12007	419.744675	6.862723	chr6	118574043	118574503	LTR|ERV1|LTR10B2	+	chr6	118574401	118590900	MSTRG.50840.3	+	118574401,118576250,118582402	118574699,118577306,118590900	0.939702
smooth_muscle_cell_derived_from_H9	chr5	87720400	87720419	87720400	-	RAMPAGE_only	9	11	31	1.083708	4.098069	chr5	87718642	87721422	LTR|ERV1|HUERS-P1-int	-	chr5	87713134	87733269	LINC02144|ENST00000511417.1	-	87713134,87715471,87733014	87713308,87715634,87733269	0.580645
smooth_muscle_cell_derived_from_H9	chr19	12800915	12801038	12800915	-	High_confidence	10	10	72	2.517000	4.629373	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.972222
smooth_muscle_cell_derived_from_H9	chr6	160225548	160225556	160225548	-	High_confidence	32	33	63	2.202375	5.000657	chr6	160225528	160225656	SINE|MIR|MIR	+	chr6	160217013	160225911	MSTRG.51841.3	-	160217013,160224704,160225346	160217498,160224804,160225911	0.571429
smooth_muscle_cell_derived_from_H9	chr7	137268623	137268637	137268623	-	High_confidence	16	16	42	1.468250	4.496815	chr7	137268351	137268846	LTR|ERV1|LTR2B	-	chr7	137227533	137268578	MSTRG.55165.3	-	137227533,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268578	0.928571
smooth_muscle_cell_derived_from_H9	chr16	81664277	81664288	81664287	+	RAMPAGE_only	4	4	12	0.419500	2.913977	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.916667
smooth_muscle_cell_derived_from_H9	chr3	120596735	120596764	120596735	-	RAMPAGE_only	8	8	20	0.699167	3.303702	chr3	120596706	120596936	SINE|MIR|MIR	+	chr3	120392292	120451253	FSTL1|ENST00000295633.7	-	120392292,120399882,120402807,120403241,120404852,120409531,120410951,120411853,120415922,120450683,120450896	120396996,120399959,120402918,120403354,120404971,120409662,120410984,120411983,120416027,120450746,120451253	0.750000
smooth_muscle_cell_derived_from_H9	chr15	90413581	90413626	90413625	+	RAMPAGE_only	5	5	17	0.594292	3.969816	chr15	90413281	90413747	LTR|ERV1|MER84	-	chr15	90388276	90440528	IQGAP1|ENST00000560418.1	+	90388276,90426109,90429588,90431220,90433718,90439331,90440501	90388396,90426266,90429666,90431252,90433795,90439399,90440528	0.588235
smooth_muscle_cell_derived_from_H9	chrX	47658609	47658630	47658609	-	High_confidence	19	20	77	2.691791	3.041555	chrX	47658369	47658606	SINE|MIR|MIR	-	chrX	47651800	47659107	UXT|ENST00000485641.5	-	47651800,47652080,47657182,47657781,47658829	47651895,47652144,47657290,47657863,47659107	0.961039
smooth_muscle_cell_derived_from_H9	chr2	113117956	113117971	113117970	+	High_confidence	21	28	58	2.027583	4.859034	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.844828
smooth_muscle_cell_derived_from_H9	chr12	10363706	10363707	10363706	+	High_confidence	16	16	23	0.804042	3.261842	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.956522
smooth_muscle_cell_derived_from_H9	chr4	105399961	105399962	105399961	-	High_confidence	12	12	13	0.454458	3.084963	chr4	105399771	105400125	DNA|TcMar-Tigger|Tigger7	+	chr4	105369564	105399636	PPA2|ENST00000513605.5	-	105369564,105370836,105386566,105396248,105399036	105369753,105370873,105386636,105396334,105399636	0.538462
smooth_muscle_cell_derived_from_H9	chr6	122444275	122444491	122444285	-	RAMPAGE_only	14	14	214	7.481083	4.891836	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	1.000000
smooth_muscle_cell_derived_from_H9	chr2	182030832	182030862	182030851	+	High_confidence	4	6	14	0.489417	3.378783	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.857143
smooth_muscle_cell_derived_from_H9	chr12	53033909	53034022	53034021	+	RAMPAGE_only	15	16	70	2.447083	5.543289	chr12	53034069	53034237	DNA|hAT-Charlie|MER20B	+	chr12	53037725	53040352	EIF4B|ENST00000549592.1	+	53037725,53039629,53040142	53039343,53039702,53040352	0.542857
smooth_muscle_cell_derived_from_H9	chr22	30971751	30971763	30971762	+	High_confidence	5	5	11	0.384542	3.095795	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	1.000000
smooth_muscle_cell_derived_from_H9	chr9	134834617	134834686	134834658	+	RAMPAGE_only	2	2	11	0.384542	3.121928	chr9	134834481	134834743	LINE|L2|L2b	-	chr9	134822921	134844840	MSTRG.61250.7	+	134822921,134823415,134824599,134825791,134829975,134834970,134842156,134842587	134823033,134823469,134824855,134825904,134830044,134835204,134842566,134844840	0.636364
smooth_muscle_cell_derived_from_H9	chr7	152082463	152082466	152082465	+	RAMPAGE_only	6	9	13	0.454458	2.661226	chr7	152082186	152082768	LTR|ERV1|LTR10C	-	chr7	152079274	152104891	GALNT11|ENST00000422997.6	+	152079274,152094189,152100797,152103111	152079408,152094522,152100921,152104891	0.923077
smooth_muscle_cell_derived_from_H9	chr3	24687852	24687895	24687894	+	RAMPAGE_only	12	13	47	1.643042	4.985336	chr3	24687700	24687941	LTR|ERVL-MaLR|MLT1F	+	chr3	24829314	25596455	MSTRG.37875.14	+	24829314,24833088,24858673,25060124,25174118,25461192,25501181,25569757,25580545,25593502,25594519,25596419	24829403,24833222,24858752,25060176,25174575,25461341,25501323,25569918,25580722,25593707,25594678,25596455	0.553191
smooth_muscle_cell_derived_from_H9	chr6	56785867	56785868	56785867	-	High_confidence	10	10	14	0.489417	2.931209	chr6	56779724	56785868	LINE|L1|L1PA3	-	chr6	56670674	56785879	DST|ENST00000522538.5	-	56670674,56699652,56701887,56704279,56735227,56785770	56670807,56699745,56701965,56704369,56735289,56785879	0.857143
smooth_muscle_cell_derived_from_H9	chr16	58755976	58755977	58755976	-	RAMPAGE_only	7	7	7	0.244708	2.807355	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	0.857143
smooth_muscle_cell_derived_from_H9	chr7	121479311	121479385	121479314	-	RAMPAGE_only	12	14	60	2.097500	4.037908	chr7	121479119	121479346	LTR|ERVL-MaLR|MLT1N2	-	chr7	121427630	121511209	MSTRG.54851.12	-	121427630,121510775,121511037	121486499,121510953,121511209	1.000000
smooth_muscle_cell_derived_from_H9	chr9	129488730	129488905	129488856	+	High_confidence	139	140	834	29.155248	6.014223	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.960432
smooth_muscle_cell_derived_from_H9	chr17	82081601	82081607	82081601	-	RAMPAGE_only	5	5	10	0.349583	3.121928	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079006	82085987	MSTRG.25297.4	-	82079006,82079356,82080139,82080369,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481	82079280,82079608,82080238,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085987	1.000000
smooth_muscle_cell_derived_from_H9	chr5	140700445	140700455	140700445	+	High_confidence	1071	1385	3458	120.885907	4.723148	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.994505
smooth_muscle_cell_derived_from_H9	chr15	62894572	62894597	62894572	+	RAMPAGE_only	6	6	15	0.524375	3.324863	chr15	62894534	62894826	SINE|Alu|AluSx3	+	chr15	62895811	62899543	AC103740.2|ENST00000557900.1	+	62895811,62898650	62896143,62899543	0.866667
smooth_muscle_cell_derived_from_H9	chr1	25820158	25820193	25820192	+	High_confidence	7	7	26	0.908917	3.688722	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.615385
smooth_muscle_cell_derived_from_H9	chr19	48270080	48270081	48270080	+	High_confidence	17	17	17	0.594292	3.337175	chr19	48269716	48270187	LTR|ERV1|LTR7C	+	chr19	48270098	48287608	ZNF114|NM_153608.2	+	48270098,48271244,48271726,48279730,48282370,48285760	48270219,48271449,48271828,48279808,48282497,48287608	0.764706
smooth_muscle_cell_derived_from_H9	chr1	39026110	39026151	39026110	+	High_confidence	20	20	133	4.649458	5.305636	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.894737
smooth_muscle_cell_derived_from_H9	chr2	47369479	47369492	47369479	+	High_confidence	12	12	43	1.503208	4.737323	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369474	47375254	EPCAM|ENST00000474691.1	+	47369474,47373462,47375233	47369581,47374048,47375254	0.558140
smooth_muscle_cell_derived_from_H9	chr8	75324331	75324455	75324454	-	High_confidence	10	10	69	2.412125	5.171870	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.681159
smooth_muscle_cell_derived_from_H9	chr11	64242395	64242549	64242548	+	High_confidence	9	10	130	4.544583	5.588193	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.992308
smooth_muscle_cell_derived_from_H9	chr2	174410103	174410108	174410107	+	High_confidence	6	6	11	0.384542	3.277613	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410081	174427895	SCRN3|ENST00000549848.5	+	174410081,174422884,174424474,174427712	174410503,174423047,174424649,174427895	0.909091
smooth_muscle_cell_derived_from_H9	chr15	39118702	39118737	39118725	-	High_confidence	3	3	9	0.314625	2.725481	chr15	39113911	39121297	LINE|L1|L1PA16	+	chr15	38865321	39118713	AC013652.1|ENST00000560197.5	-	38865321,38867969,38868311,38885496,38886696,38974154,39071502,39118649	38865722,38868184,38868457,38885628,38886929,38974235,39071608,39118713	0.555556
smooth_muscle_cell_derived_from_H9	chr14	28188817	28188933	28188827	-	High_confidence	17	20	138	4.824250	5.630197	chr14	28188442	28194470	LINE|L1|L1PA2	+	chr14	28185296	28188829	MSTRG.16323.1	-	28185296	28188829	0.797101
smooth_muscle_cell_derived_from_H9	chr5	173454637	173454640	173454637	+	High_confidence	206	223	299	10.452541	5.279789	chr5	173454482	173455036	LTR|ERVL-MaLR|MLT1F1	+	chr5	173454659	173456168	MSTRG.47991.1	+	173454659	173456168	0.993311
smooth_muscle_cell_derived_from_H9	chr1	83182286	83182408	83182286	-	High_confidence	8	12	64	2.237333	4.820762	chr1	83182174	83188201	LINE|L1|L1PA2	+	chr1	83019759	83182263	MSTRG.2080.1	-	83019759,83182169	83021428,83182263	0.718750
smooth_muscle_cell_derived_from_H9	chr15	80059918	80059933	80059918	+	High_confidence	66	77	192	6.711999	4.955283	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.984375
smooth_muscle_cell_derived_from_H9	chr5	81616465	81616466	81616465	-	High_confidence	4	4	6	0.209750	2.584963	chr5	81616090	81622140	LINE|L1|L1HS	+	chr5	81442650	81616473	SSBP2|ENST00000509743.6	-	81442650,81446867,81448789,81461054,81466973,81473699,81474495,81489249,81513627,81615472,81616348	81442723,81446922,81448825,81461103,81467041,81473770,81474562,81489309,81513717,81615557,81616473	1.000000
smooth_muscle_cell_derived_from_H9	chr3	114624940	114625007	114625006	-	High_confidence	20	22	114	3.985250	5.128864	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.719298
smooth_muscle_cell_derived_from_H9	chr6	127330828	127330835	127330828	-	High_confidence	3	3	9	0.314625	2.500000	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127288761	127331030	ECHDC1|ENST00000368295.8	-	127288761,127314815,127326997,127330808	127290277,127314896,127327144,127331030	0.666667
smooth_muscle_cell_derived_from_H9	chr18	41632117	41632232	41632117	-	High_confidence	18	20	119	4.160041	5.927176	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41521197	41632075	KC6|ENST00000600183.5	-	41521197,41525354,41631999	41521496,41525526,41632075	0.512605
smooth_muscle_cell_derived_from_H9	chr11	76621719	76621740	76621739	-	RAMPAGE_only	5	7	14	0.489417	3.093069	chr11	76621682	76621865	SINE|MIR|MIRb	+	chr11	76607852	76630427	AP001189.5|ENST00000637683.1	-	76607852,76626572,76627738,76628403,76630194	76608238,76627225,76627801,76628481,76630427	1.000000
smooth_muscle_cell_derived_from_H9	chr5	27472283	27472304	27472283	+	High_confidence	250	277	811	28.351206	7.466719	chr5	27472073	27472487	LTR|ERV1|MER61C	+	chr5	27472278	27497004	MSTRG.45194.1	+	27472278,27475534,27484925,27489281,27495948	27472519,27477801,27485029,27489386,27497004	0.673243
smooth_muscle_cell_derived_from_H9	chr12	121950291	121950292	121950291	+	RAMPAGE_only	47	47	59	2.062542	5.173252	chr12	121949929	121950482	LINE|L1|L1MB5	+	chr12	121952694	121959739	WDR66|ENST00000535257.1	+	121952694,121957073,121958271,121958942	121954334,121957268,121958522,121959739	0.728814
smooth_muscle_cell_derived_from_H9	chr7	137268353	137268453	137268452	-	High_confidence	300	309	559	19.541707	6.116694	chr7	137268351	137268846	LTR|ERV1|LTR2B	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.966011
smooth_muscle_cell_derived_from_H9	chr5	172954196	172954224	172954196	+	RAMPAGE_only	4	4	18	0.629250	3.725481	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172958728	172969716	RPL26L1|ENST00000519974.5	+	172958728,172959864,172968458,172969412	172958801,172960041,172968599,172969716	0.888889
smooth_muscle_cell_derived_from_H9	chr19	959150	959154	959150	+	RAMPAGE_only	30	40	65	2.272291	5.164300	chr19	959115	959268	LTR|ERVL-MaLR|MLT1D	+	chr19	932508	972055	ARID3A|ENST00000587532.5	+	932508,960091,964247,964832,968404,971877	932742,960164,964431,965080,968503,972055	0.507692
smooth_muscle_cell_derived_from_H9	chr20	34369400	34369454	34369418	+	RAMPAGE_only	4	4	19	0.664208	3.681881	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	1.000000
smooth_muscle_cell_derived_from_H9	chr3	9986881	9986914	9986887	+	High_confidence	7	8	35	1.223542	4.369707	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9987214	10003097	EMC3-AS1|ENST00000440568.1	+	9987214,9987814,9988711,10002716	9987264,9987905,9988747,10003097	0.514286
smooth_muscle_cell_derived_from_H9	chr17	76773307	76773330	76773329	+	High_confidence	3	3	9	0.314625	2.725481	chr17	76773308	76773601	LINE|L1|L1MD	-	chr17	76773096	76778338	MFSD11|ENST00000590070.1	+	76773096,76774996,76776405,76778187	76773351,76775171,76776541,76778338	0.888889
smooth_muscle_cell_derived_from_H9	chr11	73272240	73272248	73272240	+	High_confidence	15	15	24	0.839000	3.368523	chr11	73272218	73272327	SINE|MIR|MIRc	+	chr11	73272201	73298617	P2RY6|ENST00000393590.2	+	73272201,73296484	73272466,73298617	0.625000
smooth_muscle_cell_derived_from_H9	chr13	43057883	43057891	43057890	+	RAMPAGE_only	8	8	27	0.943875	3.912114	chr13	43056898	43059152	LINE|L1|L1PB1	-	chr13	43059514	43113205	MSTRG.14942.3	+	43059514,43065685,43068929,43078611,43085767,43107177	43062295,43065737,43069003,43078688,43085838,43113205	0.888889
smooth_muscle_cell_derived_from_H9	chr4	155522130	155522131	155522130	-	RAMPAGE_only	16	16	23	0.804042	3.914866	chr4	155521923	155522192	LINE|L2|L2b	+	chr4	155518752	155523207	MSTRG.44271.1	-	155518752,155522051	155521805,155523207	1.000000
smooth_muscle_cell_derived_from_H9	chrX	147937574	147937599	147937598	+	RAMPAGE_only	3	3	9	0.314625	2.947703	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147951112	MSTRG.63417.19	+	147940580,147943130,147945533,147948682	147940662,147945051,147945616,147951112	1.000000
smooth_muscle_cell_derived_from_H9	chr3	9973632	9973653	9973632	-	RAMPAGE_only	3	3	8	0.279667	2.750000	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	1.000000
smooth_muscle_cell_derived_from_H9	chr8	39685045	39685046	39685045	+	High_confidence	60	63	79	2.761708	4.389366	chr8	39684703	39685147	LTR|ERV1|LTR2	+	chr8	39685129	39730062	ADAM18|ENST00000523755.5	+	39685129,39692599,39706789,39723747,39729897	39685412,39692680,39706904,39723907,39730062	0.974684
smooth_muscle_cell_derived_from_H9	chr6	112479994	112479995	112479994	+	RAMPAGE_only	23	30	30	1.048750	3.469577	chr6	112479798	112480167	LTR|ERVL-MaLR|THE1D	+	chr6	112482754	112482987	MSTRG.50658.1	+	112482754	112482987	0.600000
smooth_muscle_cell_derived_from_H9	chr3	110835779	110836021	110835873	-	RAMPAGE_only	15	15	160	5.593333	5.709593	chr3	110830864	110836421	LINE|L1|L1PA7	-	chr3	110819784	110893476	MSTRG.39434.5	-	110819784,110889425,110893137	110889209,110892603,110893476	0.993750
smooth_muscle_cell_derived_from_H9	chr4	102431237	102431248	102431244	-	High_confidence	15	18	61	2.132458	4.815342	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.868852
smooth_muscle_cell_derived_from_H9	chr7	2242922	2242923	2242922	+	High_confidence	30	30	30	1.048750	4.389898	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
smooth_muscle_cell_derived_from_H9	chr9	127522793	127522834	127522833	-	RAMPAGE_only	5	5	17	0.594292	3.125000	chr9	127522529	127523072	LINE|L2|L2a	+	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	0.941176
smooth_muscle_cell_derived_from_H9	chr16	30097297	30097305	30097302	+	High_confidence	2	3	8	0.279667	2.750000	chr16	30097208	30099040	LTR|ERV1|HERVIP10B3-int	+	chr16	30096429	30104116	AC012645.1|ENST00000515455.2	+	30096429,30103456	30097419,30104116	0.875000
smooth_muscle_cell_derived_from_H9	chr16	14511324	14511354	14511342	-	RAMPAGE_only	13	14	64	2.237333	5.110150	chr16	14511277	14511448	SINE|tRNA-RTE|MamSINE1	+	chr16	14446956	14501689	PARN|ENST00000564882.5	-	14446956,14482637,14501552	14447081,14482827,14501689	0.578125
smooth_muscle_cell_derived_from_H9	chr6	43013375	43013393	43013392	-	High_confidence	32	32	55	1.922708	5.049275	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
smooth_muscle_cell_derived_from_H9	chr1	106524916	106525011	106524995	+	High_confidence	34	37	220	7.690833	5.249173	chr1	106525034	106525061	LTR|ERVL|LTR16C	+	chr1	106524867	106750541	MSTRG.2545.1	+	106524867,106581396,106750290	106525072,106581514,106750541	0.622727
smooth_muscle_cell_derived_from_H9	chr11	8831565	8831611	8831594	-	RAMPAGE_only	5	6	21	0.734125	3.041626	chr11	8831585	8831716	SINE|Alu|FLAM_C	+	chr11	8730807	8835667	ST5|ENST00000529940.5	-	8730807,8811246,8835623	8731209,8811335,8835667	0.904762
smooth_muscle_cell_derived_from_H9	chr14	21003857	21003858	21003857	+	High_confidence	12	12	15	0.524375	3.235926	chr14	21003287	21003917	LTR|ERV1|PABL_A	+	chr14	21003775	21029406	MSTRG.16095.2	+	21003775,21019723,21028940	21004122,21019810,21029406	0.600000
smooth_muscle_cell_derived_from_H9	chr13	43060774	43060824	43060804	+	RAMPAGE_only	9	10	36	1.258500	4.059531	chr13	43060714	43061388	LTR|ERV1|HERVH-int	-	chr13	43059514	43113205	MSTRG.14942.3	+	43059514,43065685,43068929,43078611,43085767,43107177	43062295,43065737,43069003,43078688,43085838,43113205	1.000000
smooth_muscle_cell_derived_from_H9	chr2	180692008	180692009	180692008	+	High_confidence	268	268	276	9.648499	4.983510	chr2	180691204	180692425	LTR|ERV1|LTR12C	+	chr2	180692103	180916939	SCHLAP1|NR_104322.1	+	180692103,180724595,180725190,180823932,180827240,180899649,180916272	180692441,180724690,180725291,180824070,180827507,180899718,180916939	0.945652
smooth_muscle_cell_derived_from_H9	chr9	72114573	72114611	72114604	+	High_confidence	12	16	46	1.608083	4.969002	chr9	72114564	72114671	SINE|Alu|AluYh9	-	chr9	72114594	72252223	GDA|ENST00000545168.5	+	72114594,72195499,72202570,72210686,72213885,72219478,72223119,72225676,72227942,72231113,72241151,72245147,72247405,72248271	72114833,72195588,72202742,72210774,72213991,72219506,72223227,72225784,72228040,72231181,72241298,72245278,72247433,72252223	0.956522
smooth_muscle_cell_derived_from_H9	chr19	49086520	49086547	49086520	+	High_confidence	2	2	7	0.244708	2.521641	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.571429
smooth_muscle_cell_derived_from_H9	chr4	99020019	99020049	99020019	-	RAMPAGE_only	3	3	13	0.454458	3.238901	chr4	99013919	99021508	LTR|ERV1|HERVIP10B3-int	-	chr4	99013419	99021645	MSTRG.43179.3	-	99013419,99017293,99021303	99016142,99020149,99021645	1.000000
smooth_muscle_cell_derived_from_H9	chr13	43057965	43057975	43057965	+	RAMPAGE_only	14	14	32	1.118667	3.753928	chr13	43056898	43059152	LINE|L1|L1PB1	-	chr13	43059514	43113205	MSTRG.14942.3	+	43059514,43065685,43068929,43078611,43085767,43107177	43062295,43065737,43069003,43078688,43085838,43113205	0.968750
smooth_muscle_cell_derived_from_H9	chr15	98890497	98890533	98890528	+	High_confidence	32	33	65	2.272291	5.036814	chr15	98890160	98890677	LTR|ERV1|MER41A	+	chr15	98890541	98896886	IGF1R|ENST00000560432.1	+	98890541,98891324,98896756	98890755,98891637,98896886	0.569231
smooth_muscle_cell_derived_from_H9	chr10	17617796	17617813	17617812	-	High_confidence	5	8	15	0.524375	2.973557	chr10	17617759	17617913	SINE|Alu|FRAM	-	chr10	17589031	17617377	HACD1|ENST00000361271.7	-	17589031,17594204,17599289,17603559,17603725,17603929,17617082	17590446,17594383,17599411,17603648,17603744,17604047,17617377	0.600000
smooth_muscle_cell_derived_from_H9	chr13	109265415	109265416	109265415	+	High_confidence	117	123	140	4.894166	5.329032	chr13	109265089	109265520	LTR|ERV1|LTR7Y	+	chr13	109265433	109265719	MSTRG.15721.1	+	109265433	109265719	0.771429
smooth_muscle_cell_derived_from_H9	chr11	12249213	12249228	12249214	+	RAMPAGE_only	3	5	19	0.664208	3.683542	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.789474
smooth_muscle_cell_derived_from_H9	chr6	114010087	114010149	114010128	-	RAMPAGE_only	27	27	92	3.216166	5.042603	chr6	114009574	114011168	LTR|ERV1|MER51-int	-	chr6	113945379	114011308	MSTRG.50718.6	-	113945379,113946007,113948978,113949167,113953276,113956012,113956618,113958648,113959905,113962366,114000000,114009990,114011130	113945470,113946148,113949087,113949260,113953418,113956151,113956693,113958766,113960018,113962394,114000099,114010117,114011308	0.913043
smooth_muscle_cell_derived_from_H9	chr14	102240582	102240615	102240614	-	High_confidence	4	4	14	0.489417	2.842371	chr14	102240323	102240748	LTR|ERV1|HERVH-int	+	chr14	102228838	102240611	MOK|ENST00000524370.5	-	102228838,102229456,102232534,102233687,102240451	102229366,102229657,102232708,102233789,102240611	0.642857
smooth_muscle_cell_derived_from_H9	chr7	121506600	121506966	121506828	-	RAMPAGE_only	23	24	326	11.396416	4.854258	chr7	121506144	121507932	LTR|ERV1|HERVIP10B3-int	-	chr7	121427630	121511209	MSTRG.54851.10	-	121427630,121499866	121451193,121511209	1.000000
smooth_muscle_cell_derived_from_H9	chr5	58455287	58455290	58455289	-	RAMPAGE_only	5	10	12	0.419500	2.913977	chr5	58455099	58455251	DNA|hAT-Charlie|MER5A	-	chr5	58453981	58460139	PLK2|NM_006622.3	-	58453981,58454910,58455284,58455538,58456025,58456491,58456944,58457180,58457487,58458083,58458398,58458724,58458984,58459689	58454774,58455021,58455414,58455779,58456155,58456589,58457092,58457379,58457583,58458171,58458528,58458841,58459092,58460139	0.916667
smooth_muscle_cell_derived_from_H9	chr11	12528258	12528308	12528268	+	RAMPAGE_only	4	4	26	0.908917	3.625815	chr11	12528254	12528421	SINE|MIR|MIRb	-	chr11	12377478	12535356	PARVA|ENST00000649199.1	+	12377478,12473744,12473912,12477846,12496457,12504313,12508583,12511513,12513298,12513996,12517609,12518444,12527848	12377783,12473834,12473983,12477949,12496598,12504429,12508642,12511533,12513360,12514065,12517711,12518517,12535356	0.923077
smooth_muscle_cell_derived_from_H9	chr4	189601103	189601204	189601203	+	High_confidence	48	53	251	8.774541	6.346550	chr4	189601055	189601407	LTR|ERVL|HERVL32-int	+	chr4	189601001	189604528	MSTRG.44822.1	+	189601001,189602179,189603125	189601794,189602242,189604528	0.896414
smooth_muscle_cell_derived_from_H9	chr8	118011642	118011733	118011701	+	High_confidence	8	8	62	2.167416	4.498731	chr8	118011483	118011715	SINE|MIR|MIRb	-	chr8	118011809	118012635	MSTRG.58038.1	+	118011809	118012635	0.967742
smooth_muscle_cell_derived_from_H9	chr7	15547794	15547820	15547794	-	RAMPAGE_only	7	7	20	0.699167	3.503702	chr7	15547309	15553333	LINE|L1|L1PA2	+	chr7	15200317	15562015	AGMO|NM_001004320.1	-	15200317,15365513,15366139,15385445,15387405,15390670,15390839,15394112,15418557,15431004,15544771,15560140,15561719	15201359,15365619,15366222,15385562,15387540,15390750,15390905,15394179,15418653,15431108,15544923,15560271,15562015	0.900000
smooth_muscle_cell_derived_from_H9	chr4	94233998	94234041	94234040	+	RAMPAGE_only	5	6	21	0.734125	2.665957	chr4	94234038	94234182	SINE|MIR|MIR3	-	chr4	94208083	94289899	SMARCAD1|ENST00000394961.6	+	94208083,94208345,94213034,94226118,94233953,94236951,94240905,94249653,94250751,94252615,94264706,94270727,94273616,94274737,94274889,94276338,94277021,94278421,94278615,94278922,94280591,94281471,94283120,94284959,94289472	94208242,94208584,94213152,94226296,94234122,94237018,94241006,94249755,94250833,94253007,94264906,94270818,94273716,94274797,94274965,94276474,94277159,94278517,94278733,94279050,94280780,94281590,94283303,94285069,94289899	0.952381
smooth_muscle_cell_derived_from_H9	chr7	40843882	40843947	40843897	+	RAMPAGE_only	8	8	66	2.307250	5.048765	chr7	40843519	40843915	LINE|L2|L2a	-	chr7	40793364	40881721	MSTRG.53077.10	+	40793364,40860315,40881680	40793501,40860631,40881721	0.909091
smooth_muscle_cell_derived_from_H9	chr14	34586239	34586300	34586239	-	RAMPAGE_only	3	4	22	0.769083	3.095795	chr14	34585901	34586200	SINE|Alu|AluSg	-	chr14	34561093	34630109	SNX6|ENST00000396526.7	-	34561093,34567685,34567853,34575755,34581560,34586229,34593044,34597549,34603347,34605595,34608029,34609637,34629906	34563175,34567771,34568013,34575842,34581600,34586305,34593150,34597645,34603471,34605717,34608140,34609742,34630109	1.000000
smooth_muscle_cell_derived_from_H9	chrX	13303406	13303409	13303408	-	High_confidence	5	12	13	0.454458	2.855389	chrX	13303238	13303604	LTR|ERVL-MaLR|THE1B	-	chrX	13266047	13303392	LINC02154|ENST00000412485.1	-	13266047,13287428,13303319	13267335,13287564,13303392	0.692308
smooth_muscle_cell_derived_from_H9	chrX	71300028	71300461	71300459	+	RAMPAGE_only	33	52	617	21.569290	5.797159	chrX	71300434	71300519	SINE|Alu|AluSx	-	chrX	71291994	71301168	NONO|ENST00000490044.5	+	71291994,71294218,71296564,71296850,71297376,71297835,71298468,71298706,71299941	71293041,71294528,71296660,71297047,71297461,71297938,71298508,71298816,71301168	1.000000
smooth_muscle_cell_derived_from_H9	chr18	55721082	55721151	55721140	+	High_confidence	10	11	55	1.922708	5.012911	chr18	55715484	55721529	LINE|L1|L1PA2	-	chr18	55721317	55788761	AC022031.2|ENST00000589662.1	+	55721317,55784898,55786585,55788612	55721534,55784974,55786656,55788761	0.527273
smooth_muscle_cell_derived_from_H9	chr1	153549103	153549106	153549103	-	High_confidence	5	5	11	0.384542	2.921928	chr1	153549066	153549188	SINE|MIR|MIRb	+	chr1	153547512	153549126	S100A3|ENST00000368712.1	-	153547512,153548344,153549027	153547846,153548490,153549126	0.545455
smooth_muscle_cell_derived_from_H9	chr7	87039782	87039797	87039796	-	High_confidence	7	10	17	0.594292	3.077820	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86919165	87040221	MSTRG.53875.13	-	86919165,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755,87040102	86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87039871,87040221	0.941176
smooth_muscle_cell_derived_from_H9	chr1	200411676	200411687	200411683	+	High_confidence	23	26	109	3.810458	5.270270	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411693	200478360	AC104461.1|ENST00000647823.1	+	200411693,200444617,200472040,200473908,200477967	200411962,200444945,200472119,200474186,200478360	0.844037
smooth_muscle_cell_derived_from_H9	chr1	6639916	6639944	6639916	-	RAMPAGE_only	4	4	15	0.524375	3.006239	chr1	6639724	6639885	SINE|MIR|MIR	-	chr1	6634167	6645057	DNAJC11|ENST00000465508.5	-	6634167,6636116,6637197,6637446,6639901,6644557,6645040	6635700,6636246,6637340,6638364,6640057,6644674,6645057	1.000000
smooth_muscle_cell_derived_from_H9	chr7	7566500	7566515	7566500	-	High_confidence	6	6	20	0.699167	3.892407	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.550000
smooth_muscle_cell_derived_from_H9	chr4	69051395	69051431	69051430	+	High_confidence	19	26	58	2.027583	4.011600	chr4	69051337	69051715	LTR|ERV1|Harlequin-int	+	chr4	69051475	69112572	UGT2B7|ENST00000509763.1	+	69051475,69089471,69098539,69102806,69107174,69112456	69051602,69089603,69098688,69102938,69107262,69112572	0.879310
smooth_muscle_cell_derived_from_H9	chr19	45450734	45450766	45450734	-	High_confidence	21	21	76	2.656833	5.158534	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45449930	45450412	MSTRG.28416.1	-	45449930	45450412	0.565789
smooth_muscle_cell_derived_from_H9	chr17	41820707	41820732	41820707	+	High_confidence	2	3	7	0.244708	2.807355	chr17	41820685	41820813	SINE|MIR|MIRb	-	chr17	41820442	41822540	FKBP10|ENST00000464180.1	+	41820442,41821653,41822222	41821089,41821817,41822540	0.857143
smooth_muscle_cell_derived_from_H9	chr1	229296931	229296936	229296931	+	RAMPAGE_only	6	6	14	0.489417	3.180833	chr1	229296919	229297133	SINE|MIR|MIRb	+	chr1	229271193	229303894	RAB4A|ENST00000473894.1	+	229271193,229295847,229297481,229298976,229302861,229303805	229271370,229295910,229297636,229299072,229302989,229303894	0.500000
smooth_muscle_cell_derived_from_H9	chr10	29142762	29142763	29142762	+	High_confidence	309	371	427	14.927207	5.889601	chr10	29142530	29143374	LTR|ERV1|LTR1A2	+	chr10	29142637	29144046	MSTRG.5866.1	+	29142637,29143607	29143087,29144046	0.929742
smooth_muscle_cell_derived_from_H9	chr6	43025307	43025308	43025307	+	High_confidence	14	14	20	0.699167	3.784184	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.750000
smooth_muscle_cell_derived_from_H9	chrX	53211518	53211529	53211518	-	High_confidence	4	4	12	0.419500	2.855389	chrX	53211312	53211478	SINE|MIR|MIRb	-	chrX	53198489	53211658	KDM5C|ENST00000497100.5	-	53198489,53198976,53201549,53201853,53210413,53210675,53211496	53198888,53199158,53201744,53201973,53210576,53210857,53211658	1.000000
smooth_muscle_cell_derived_from_H9	chr7	134711498	134711504	134711503	+	High_confidence	848	876	2149	75.125452	7.666411	chr7	134711275	134711628	LTR|ERVL|MLT2D	+	chr7	134711438	134960056	MSTRG.55101.1	+	134711438,134745507,134843883,134867692,134928753,134932987,134941091,134947507,134950373,134958068,134958208,134959973	134711597,134745572,134843971,134867804,134928900,134933390,134941237,134947769,134950514,134958112,134958290,134960056	0.907399
smooth_muscle_cell_derived_from_H9	chr11	7906253	7906289	7906253	-	High_confidence	19	25	36	1.258500	4.593400	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.805556
smooth_muscle_cell_derived_from_H9	chr1	167863657	167863684	167863657	+	RAMPAGE_only	5	5	15	0.524375	2.606239	chr1	167863572	167864915	LTR|ERV1|Harlequin-int	+	chr1	167935782	167987547	DCAF6|ENST00000450548.5	+	167935782,167951799,167966628,167974829,167987494	167936112,167951861,167966721,167975015,167987547	0.866667
smooth_muscle_cell_derived_from_H9	chr2	182030747	182030774	182030773	+	High_confidence	15	15	57	1.992625	3.740311	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.877193
smooth_muscle_cell_derived_from_H9	chr1	201588620	201588621	201588620	+	RAMPAGE_only	7	7	7	0.244708	2.521641	chr1	201588641	201588848	LINE|L1|L1MB7	+	chr1	201622884	201623610	NAV1|ENST00000593583.1	+	201622884	201623610	0.714286
smooth_muscle_cell_derived_from_H9	chr15	49871106	49871108	49871107	-	RAMPAGE_only	4	7	11	0.384542	2.646439	chr15	49871078	49871263	SINE|MIR|MIRb	+	chr15	49858237	49876695	ATP8B4|ENST00000558498.5	-	49858237,49862244,49866345,49876277,49876642	49860475,49862375,49866484,49876523,49876695	0.909091
smooth_muscle_cell_derived_from_H9	chr7	121505792	121505793	121505792	-	RAMPAGE_only	142	142	179	6.257541	5.824306	chr7	121505668	121506144	LTR|ERV1|LTR10B2	-	chr7	121427630	121511209	MSTRG.54851.10	-	121427630,121499866	121451193,121511209	0.988827
smooth_muscle_cell_derived_from_H9	chr6	118576377	118576391	118576387	+	RAMPAGE_only	3	3	11	0.384542	2.663533	chr6	118576268	118576608	LTR|ERV1|HERVIP10B3-int	+	chr6	118574401	118590900	MSTRG.50840.3	+	118574401,118576250,118582402	118574699,118577306,118590900	0.636364
smooth_muscle_cell_derived_from_H9	chr20	4090915	4090928	4090915	-	High_confidence	12	12	26	0.908917	3.917189	chr20	4090642	4090998	LTR|ERVL-MaLR|MLT1N2	-	chr20	4090060	4090518	MSTRG.34261.1	-	4090060	4090518	0.576923
smooth_muscle_cell_derived_from_H9	chr7	137182048	137182075	137182064	-	High_confidence	3	4	17	0.594292	3.750000	chr7	137181608	137187601	LINE|L1|L1PA3	+	chr7	136784074	137181771	AC009264.1|ENST00000439694.5	-	136784074,137031904,137032793,137181607	136785891,137031963,137032913,137181771	0.529412
smooth_muscle_cell_derived_from_H9	chr6	77369106	77369107	77369106	-	High_confidence	10	10	14	0.489417	3.238901	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77150737	77369151	MSTRG.49937.1	-	77150737,77151818,77271339,77273026,77350621,77368885	77151280,77151974,77271493,77273307,77350734,77369151	0.857143
smooth_muscle_cell_derived_from_H9	chr7	101624893	101624894	101624893	-	High_confidence	16	16	24	0.839000	3.970176	chr7	101624689	101625117	LINE|L2|L2c	+	chr7	101613335	101624787	MSTRG.54354.2	-	101613335,101613661,101616219,101622095,101622996,101624171,101624625	101613573,101613710,101616298,101622200,101623072,101624264,101624787	1.000000
smooth_muscle_cell_derived_from_H9	chr5	91311823	91311852	91311823	-	High_confidence	6	6	14	0.489417	3.521641	chr5	91311782	91311955	SINE|5S-Deu-L2|AmnSINE1	+	chr5	91307678	91312375	LUCAT1|ENST00000650047.1	-	91307678,91310743,91312294	91308388,91311032,91312375	0.571429
smooth_muscle_cell_derived_from_H9	chr16	65232862	65232874	65232862	+	High_confidence	20	20	31	1.083708	4.237291	chr16	65232144	65234891	LTR|ERV1|HERVH-int	-	chr16	65232062	65393675	MSTRG.21951.2	+	65232062,65371096,65392993	65233403,65371185,65393675	0.516129
smooth_muscle_cell_derived_from_H9	chr1	16981569	16981637	16981569	-	High_confidence	420	452	1844	64.463162	5.724121	chr1	16981567	16981905	LTR|ERV1|LTR64	+	chr1	16974501	16981586	MFAP2|NM_001135247.1	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16981513	16975023,16975342,16975730,16976545,16976794,16976923,16977195,16978314,16981586	0.969631
smooth_muscle_cell_derived_from_H9	chr3	33446609	33446610	33446609	+	High_confidence	1781	1885	2531	88.479535	5.737687	chr3	33446461	33447026	LTR|ERV1|LTR12C	+	chr3	33446614	33455623	MSTRG.38033.1	+	33446614,33453035	33447137,33455623	0.979455
smooth_muscle_cell_derived_from_H9	chr7	39013317	39013441	39013317	+	High_confidence	6	6	53	1.852792	4.491585	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.792453
smooth_muscle_cell_derived_from_H9	chr2	227534916	227534939	227534916	+	RAMPAGE_only	5	6	13	0.454458	2.855389	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.846154
smooth_muscle_cell_derived_from_H9	chr6	4734473	4734499	4734473	+	RAMPAGE_only	4	4	12	0.419500	2.550341	chr6	4734244	4734546	LTR|ERV1|LTR78B	-	chr6	4715840	4892112	CDYL|ENST00000491864.1	+	4715840,4733158,4734761,4891712	4715881,4733248,4734844,4892112	0.750000
smooth_muscle_cell_derived_from_H9	chr1	183813048	183813073	183813072	+	High_confidence	7	10	27	0.943875	3.902175	chr1	183812475	183813185	LINE|L2|L2c	-	chr1	183813009	183928531	MSTRG.4018.3	+	183813009,183847565,183865995,183880615,183883785,183884722,183888473,183892076,183897807,183900149,183902567,183904849,183907011,183912081,183916446,183922221,183926104	183813173,183847774,183866073,183880800,183883910,183884938,183888577,183892161,183897897,183900236,183902600,183904971,183907101,183912268,183916701,183922336,183928531	0.814815
smooth_muscle_cell_derived_from_H9	chr12	132782322	132782352	132782322	-	RAMPAGE_only	6	6	18	0.629250	3.794653	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132768914	132822311	GOLGA3|ENST00000450791.6	-	132768914,132774156,132775140,132776633,132776957,132777665,132780797,132782295,132784163,132786338,132786692,132789026,132791215,132795851,132796538,132798339,132801766,132804715,132807176,132807890,132813306,132816539,132821995	132773294,132774320,132775305,132776756,132777090,132777805,132780914,132782493,132784307,132786555,132786787,132789290,132791293,132796220,132796700,132798477,132801969,132805022,132807288,132808549,132813419,132816812,132822311	1.000000
smooth_muscle_cell_derived_from_H9	chr22	18149868	18149883	18149868	+	High_confidence	8	8	24	0.839000	3.438722	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
smooth_muscle_cell_derived_from_H9	chr15	53541084	53541112	53541094	-	High_confidence	16	18	45	1.573125	4.312909	chr15	53540633	53546677	LINE|L1|L1PA2	+	chr15	53513740	53541103	WDR72|ENST00000567224.1	-	53513740,53523217,53540889	53517754,53523322,53541103	0.888889
smooth_muscle_cell_derived_from_H9	chr11	75979577	75979617	75979604	+	High_confidence	12	12	69	2.412125	4.914689	chr11	75974665	75980018	LINE|L1|L1PA6	-	chr11	75979525	76142651	UVRAG|ENST00000531818.5	+	75979525,75983386,76004004,76007533,76008806,76016814,76065709,76115923,76140710	75980038,75983513,76004089,76007621,76008867,76016980,76065788,76116015,76142651	0.971014
smooth_muscle_cell_derived_from_H9	chr22	50756939	50756950	50756939	+	High_confidence	8	8	23	0.804042	3.879664	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.782609
smooth_muscle_cell_derived_from_H9	chr6	34998724	34998863	34998724	+	High_confidence	369	369	689	24.086290	7.614944	chr6	34998360	34998835	LTR|ERV1|LTR2B	+	chr6	34998736	35091413	MSTRG.49101.5	+	34998736,35005700,35017472,35054098,35060146,35078557,35079515,35079820,35080993,35082690,35083154,35083416,35084117,35085765,35086951,35088605	34999101,35005821,35018059,35054165,35060253,35078656,35079668,35079928,35081158,35082816,35083226,35083503,35084258,35085936,35087049,35091413	0.863570
smooth_muscle_cell_derived_from_H9	chr9	88044435	88044436	88044435	-	High_confidence	793	870	1078	37.685080	6.500394	chr9	88044317	88044802	LTR|ERV1|LTR10G	-	chr9	88032013	88044450	MSTRG.60079.2	-	88032013,88044099	88032099,88044450	0.527829
smooth_muscle_cell_derived_from_H9	chr8	38825360	38825367	38825366	+	RAMPAGE_only	5	5	14	0.489417	3.235926	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.642857
smooth_muscle_cell_derived_from_H9	chr15	65300634	65300635	65300634	-	High_confidence	31	31	33	1.153625	3.950344	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65266576	65300618	PARP16|ENST00000558873.1	-	65266576,65270934,65282546,65300196	65266768,65271072,65282632,65300618	0.848485
smooth_muscle_cell_derived_from_H9	chr2	71395778	71395779	71395778	+	High_confidence	5	5	8	0.279667	2.500000	chr2	71395356	71395817	LTR|ERVK|LTR22E	+	chr2	71395718	71435058	ZNF638|ENST00000487638.5	+	71395718,71398700,71399558,71400111,71400477,71401955,71403869,71405600,71406127,71408121,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71396191,71398772,71399645,71400180,71400518,71402087,71403998,71405642,71406262,71408247,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435058	0.875000
smooth_muscle_cell_derived_from_H9	chr8	102261154	102261180	102261154	-	High_confidence	2	2	9	0.314625	2.750000	chr8	102261109	102261291	DNA|hAT-Ac|OldhAT1	+	chr8	102253945	102261986	UBR5|ENST00000517465.1	-	102253945,102257631,102258315,102258984,102261145,102261914	102254514,102257717,102258424,102259129,102261259,102261986	0.888889
smooth_muscle_cell_derived_from_H9	chr15	49396360	49396449	49396360	-	High_confidence	13	14	63	2.202375	4.894124	chr15	49395983	49402014	LINE|L1|L1PA2	+	chr15	49326961	49396442	FAM227B|ENST00000559573.3	-	49326961,49331779,49371301,49395974,49396243	49328675,49331849,49371399,49396097,49396442	0.888889
smooth_muscle_cell_derived_from_H9	chr9	22113544	22113547	22113546	+	High_confidence	366	630	681	23.806623	6.809306	chr9	22113591	22113733	SINE|MIR|MIRc	+	chr9	22113677	22121097	CDKN2B-AS1|ENST00000422420.1	+	22113677,22120199,22120503	22113799,22120410,22121097	0.720999
smooth_muscle_cell_derived_from_H9	chr22	32857046	32857084	32857046	+	RAMPAGE_only	2	2	12	0.419500	3.251629	chr22	32856523	32857200	LINE|L1|L1MA4	-	chr22	32801700	32863043	TIMP3|ENST00000266085.6	+	32801700,32849451,32857248,32858016,32859179	32802122,32849534,32857360,32858138,32863043	0.666667
smooth_muscle_cell_derived_from_H9	chr13	110401882	110401886	110401884	-	High_confidence	13	27	32	1.118667	4.113609	chr13	110401705	110402052	LTR|ERVL-MaLR|MLT1A0	-	chr13	110401179	110401507	MSTRG.15760.1	-	110401179	110401507	0.843750
smooth_muscle_cell_derived_from_H9	chr18	23576944	23576948	23576947	-	High_confidence	17	18	33	1.153625	3.331748	chr18	23576532	23578195	LTR|ERV1|LTR12C	-	chr18	23573451	23576947	NPC1|ENST00000587223.1	-	23573451,23576480	23573574,23576947	0.909091
smooth_muscle_cell_derived_from_H9	chr4	188109504	188109529	188109514	-	High_confidence	6	6	20	0.699167	3.546439	chr4	188109265	188109572	SINE|Alu|AluJb	-	chr4	188105412	188109603	TRIML2|ENST00000394461.2	-	188105412,188109242	188105587,188109603	0.500000
smooth_muscle_cell_derived_from_H9	chr11	65434588	65434887	65434793	+	RAMPAGE_only	11	12	207	7.236374	5.779646	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.995169
smooth_muscle_cell_derived_from_H9	chr7	134432378	134432445	134432435	-	High_confidence	11	14	79	2.761708	4.768662	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.949367
smooth_muscle_cell_derived_from_H9	chr6	118574171	118574191	118574179	+	High_confidence	3	3	10	0.349583	2.641604	chr6	118574043	118574503	LTR|ERV1|LTR10B2	+	chr6	118574352	118591827	MSTRG.50840.1	+	118574352,118576250,118581728,118586544	118574699,118576475,118582503,118591827	0.800000
smooth_muscle_cell_derived_from_H9	chr2	193170703	193170704	193170703	+	High_confidence	18	18	25	0.873958	3.936180	chr2	193170704	193171720	LINE|L1|L1HS	+	chr2	193170729	193172927	MSTRG.32876.1	+	193170729	193172927	0.920000
smooth_muscle_cell_derived_from_H9	chr6	36540204	36540206	36540204	-	RAMPAGE_only	4	7	9	0.314625	2.500000	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36547470	STK38|ENST00000229812.7	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540207,36547470	0.888889
smooth_muscle_cell_derived_from_H9	chr11	12940904	12941003	12941002	+	RAMPAGE_only	6	6	29	1.013792	4.043855	chr11	12940949	12941080	SINE|MIR|MIR3	-	chr11	12879442	12944483	TEAD1|ENST00000526600.1	+	12879442,12881004,12881895,12883000,12901939,12924911,12930173,12937108	12879842,12881051,12881957,12883125,12902113,12925052,12930326,12944483	1.000000
smooth_muscle_cell_derived_from_H9	chr6	122482203	122482237	122482236	+	High_confidence	6	10	16	0.559333	3.189898	chr6	122481961	122482259	SINE|Alu|AluYe5	-	chr6	122482087	122725892	MSTRG.50894.9	+	122482087,122581764,122585920,122633282,122675077,122701439,122717786,122725127	122482266,122581844,122586007,122633367,122675144,122701500,122717963,122725892	0.937500
smooth_muscle_cell_derived_from_H9	chr2	174410340	174410352	174410351	+	High_confidence	13	23	54	1.887750	4.269728	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.907407
smooth_muscle_cell_derived_from_H9	chr2	239578371	239578372	239578371	+	High_confidence	13	13	16	0.559333	3.272906	chr2	239578371	239578718	LTR|ERVL|MLT2B1	-	chr2	239578300	239586094	AC079612.1|ENST00000358775.1	+	239578300,239583018	239578924,239586094	0.937500
smooth_muscle_cell_derived_from_H9	chr5	150776121	150776159	150776158	-	High_confidence	123	202	1169	40.866288	6.655928	chr5	150775761	150776351	DNA|TcMar-Tigger|MER6A	-	chr5	150718275	150776158	MSTRG.47724.6	-	150718275,150719715,150722906,150730630,150731043,150731415,150733367,150742113,150753478,150756416,150776020	150718383,150719770,150722980,150730740,150731156,150731489,150733475,150742157,150753657,150756487,150776158	0.919589
smooth_muscle_cell_derived_from_H9	chr9	135645010	135645011	135645010	+	High_confidence	1869	1976	2110	73.762077	7.056834	chr9	135644566	135645131	LTR|ERV1|LTR10B1	+	chr9	135645016	135666628	MSTRG.61262.3	+	135645016,135650303,135657275,135661832,135664161,135664721,135665244,135665650,135665860,135666413	135648955,135650374,135660682,135663417,135664298,135664795,135665355,135665752,135665908,135666628	0.920853
smooth_muscle_cell_derived_from_H9	chr1	200411799	200411814	200411799	+	High_confidence	56	57	88	3.076333	4.442126	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411799	200475513	AC104461.1|ENST00000634596.1	+	200411799,200473908	200411962,200475513	0.909091
smooth_muscle_cell_derived_from_H9	chr2	71050202	71050227	71050202	+	RAMPAGE_only	6	6	22	0.769083	3.594466	chr2	71048568	71050605	LTR|ERV1|HERVE-int	+	chr2	71055526	71056003	OR7E62P|ENST00000456741.1	+	71055526	71056003	0.727273
smooth_muscle_cell_derived_from_H9	chr11	76621766	76621789	76621788	-	RAMPAGE_only	4	4	8	0.279667	2.521641	chr11	76621682	76621865	SINE|MIR|MIRb	+	chr11	76607852	76630427	AP001189.5|ENST00000637683.1	-	76607852,76626572,76627738,76628403,76630194	76608238,76627225,76627801,76628481,76630427	0.875000
smooth_muscle_cell_derived_from_H9	chr12	52836951	52836981	52836951	-	RAMPAGE_only	8	8	22	0.769083	3.546439	chr12	52836950	52837136	LTR|ERVL|LTR33	+	chr12	52821446	52834295	KRT79|ENST00000330553.5	-	52821446,52822344,52823015,52823886,52824197,52830022,52830231,52831405,52833783	52822077,52822379,52823236,52824012,52824362,52830118,52830292,52831626,52834295	0.909091
smooth_muscle_cell_derived_from_H9	chr15	65244454	65244455	65244454	-	RAMPAGE_only	19	19	23	0.804042	3.653757	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.913043
smooth_muscle_cell_derived_from_H9	chr3	129586587	129586597	129586596	-	High_confidence	7	7	21	0.734125	3.070847	chr3	129586391	129586559	LINE|L2|L2c	-	chr3	129570871	129586685	MSTRG.40132.13	-	129570871,129571039,129571508,129571676,129572608,129572841,129573593,129574335,129575468,129575765,129578328,129583566,129584124,129584384,129585790,129586171,129586587	129570935,129571303,129571599,129571844,129572748,129572941,129573745,129574490,129575562,129575855,129578433,129583669,129584233,129584562,129586081,129586272,129586685	0.904762
smooth_muscle_cell_derived_from_H9	chr9	110114304	110114307	110114304	-	High_confidence	10	12	16	0.559333	3.452820	chr9	110114037	110114481	LTR|ERVL-MaLR|MLT1C	-	chr9	110113695	110114296	MSTRG.60638.1	-	110113695	110114296	0.750000
smooth_muscle_cell_derived_from_H9	chr10	78977915	78977924	78977923	-	RAMPAGE_only	4	4	9	0.314625	2.500000	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78962394	ZMIZ1-AS1|ENST00000428862.5	-	78943327,78945911,78960504,78961253	78944747,78945989,78960716,78962394	0.555556
smooth_muscle_cell_derived_from_H9	chr1	153967486	153967512	153967486	+	High_confidence	13	17	36	1.258500	4.326466	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.694444
smooth_muscle_cell_derived_from_H9	chr4	2936335	2936336	2936335	+	High_confidence	19	20	22	0.769083	3.606937	chr4	2935837	2936474	LTR|ERV1|LTR8	+	chr4	2935545	2951078	NOP14-AS1|NR_015453.2	+	2935545,2938692,2946872,2950152	2938142,2938792,2947120,2951078	1.000000
smooth_muscle_cell_derived_from_H9	chr6	26956544	26956554	26956544	-	High_confidence	3	3	15	0.524375	3.039149	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.933333
smooth_muscle_cell_derived_from_H9	chr9	133711399	133711421	133711399	-	RAMPAGE_only	5	8	37	1.293458	2.879810	chr9	133711323	133711461	SINE|MIR|MIR3	+	chr9	133663563	133703701	SARDH|ENST00000371868.5	-	133663563,133666734,133670583,133671534,133685192,133690379,133694257,133696222,133702915	133664014,133666936,133670752,133671697,133685286,133690527,133694371,133696361,133703701	1.000000
smooth_muscle_cell_derived_from_H9	chrX	19647778	19647786	19647784	-	High_confidence	32	37	90	3.146250	5.301247	chrX	19647773	19647939	DNA|hAT-Charlie|MER5A	+	chrX	19588683	19647768	MSTRG.61722.6	-	19588683,19592066,19594948,19607937,19631863,19645399,19647477	19588802,19592147,19595000,19608045,19631958,19645475,19647768	0.966667
smooth_muscle_cell_derived_from_H9	chr8	143020919	143020978	143020977	+	RAMPAGE_only	5	5	37	1.293458	4.068728	chr8	143021012	143021252	LINE|L2|L2b	+	chr8	143018556	143021892	LY6E|ENST00000522024.1	+	143018556,143018832,143020887,143021313,143021565	143018586,143019119,143020991,143021433,143021892	0.891892
smooth_muscle_cell_derived_from_H9	chr7	45940573	45940593	45940592	+	High_confidence	4	4	8	0.279667	2.500000	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45940443	45994183	MSTRG.53275.2	+	45940443,45978349,45979908,45990532,45993782	45940880,45978468,45980027,45991077,45994183	0.750000
smooth_muscle_cell_derived_from_H9	chr4	182243398	182243427	182243401	+	High_confidence	297	313	637	22.268457	7.499827	chr4	182243111	182243414	SINE|Alu|AluSz	-	chr4	182243428	182803024	TENM3|ENST00000511685.5	+	182243428,182323945,182346650,182600923,182628650,182653770,182673004,182679665,182680247,182680542,182681813,182688165,182714086,182728964,182730199,182730877,182736807,182738400,182743169,182751799,182753449,182754384,182773471,182774917,182789092,182792273,182796636,182799595	182243476,182324252,182346929,182601161,182628889,182653893,182673219,182679876,182680349,182680737,182682014,182688351,182714233,182729181,182730319,182731139,182737075,182738544,182743419,182752032,182753604,182755259,182773647,182775153,182789389,182793885,182796767,182803024	0.660911
smooth_muscle_cell_derived_from_H9	chr5	90929257	90929271	90929270	+	High_confidence	5	5	14	0.489417	3.807355	chr5	90923630	90929658	LINE|L1|L1PA2	-	chr5	90929239	91163939	ADGRV1|ENST00000639821.1	+	90929239,90965414,90985343,91072446,91102218,91163781	90929398,90965531,90985522,91072604,91102340,91163939	0.500000
smooth_muscle_cell_derived_from_H9	chr11	65181205	65181229	65181228	+	High_confidence	3	4	8	0.279667	2.500000	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	1.000000
smooth_muscle_cell_derived_from_H9	chr14	27673224	27673266	27673239	-	High_confidence	43	45	190	6.642083	5.825726	chr14	27673059	27679095	LINE|L1|L1PA3	+	chr14	27321921	27673221	AL390334.1|ENST00000556890.1	-	27321921,27656337,27673028	27322141,27656502,27673221	0.784211
smooth_muscle_cell_derived_from_H9	chr6	83183508	83183517	83183508	-	RAMPAGE_only	7	7	14	0.489417	3.324863	chr6	83183504	83183731	LINE|L1|L1MEd	+	chr6	83166129	83193231	PGM3|ENST00000512866.5	-	83166129,83169241,83170304,83171936,83174373,83175961,83178672,83179809,83181735,83182844,83187007,83188613,83190808,83193178	83166466,83169323,83170478,83172059,83174487,83176060,83178756,83179967,83181931,83182978,83187075,83188798,83191014,83193231	0.500000
smooth_muscle_cell_derived_from_H9	chr17	76773096	76773113	76773096	+	High_confidence	21	22	62	2.167416	4.936141	chr17	76772816	76773304	LINE|L1|L1MEc	-	chr17	76773096	76778338	MFSD11|ENST00000590070.1	+	76773096,76774996,76776405,76778187	76773351,76775171,76776541,76778338	0.887097
smooth_muscle_cell_derived_from_H9	chr19	39485802	39485803	39485802	+	High_confidence	8	8	12	0.419500	2.663533	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	0.916667
smooth_muscle_cell_derived_from_H9	chr11	26965226	26965265	26965264	-	High_confidence	5	6	27	0.943875	4.053661	chr11	26965118	26971134	LINE|L1|L1PA2	+	chr11	26670501	26965319	MSTRG.8728.2	-	26670501,26673401,26678711,26681054,26683756,26686476,26692488,26697163,26698405,26703530,26703792,26709311,26711306,26712640,26965095	26671251,26673529,26678815,26681221,26683843,26686544,26692601,26697252,26698535,26703671,26703947,26709379,26711358,26712706,26965319	0.592593
smooth_muscle_cell_derived_from_H9	chr11	57794012	57794034	57794012	+	RAMPAGE_only	6	6	27	0.943875	3.778424	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.777778
smooth_muscle_cell_derived_from_H9	chr18	77421495	77421558	77421495	+	High_confidence	2	2	12	0.419500	3.418296	chr18	77415976	77422002	LINE|L1|L1PA3	-	chr18	77421801	77450598	MSTRG.26774.2	+	77421801,77449592	77422024,77450598	0.833333
smooth_muscle_cell_derived_from_H9	chr4	79206613	79206616	79206615	+	RAMPAGE_only	8	11	13	0.454458	2.815072	chr4	79206338	79206927	LTR|ERV1|LTR10C	+	chr4	79197540	79308655	LINC01088|ENST00000512130.5	+	79197540,79306690,79308272	79197644,79306728,79308655	0.615385
smooth_muscle_cell_derived_from_H9	chr3	135965670	135965773	135965723	+	High_confidence	42	81	379	13.249207	6.444462	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.968338
smooth_muscle_cell_derived_from_H9	chr2	11201309	11201353	11201309	-	RAMPAGE_only	9	10	28	0.978833	4.363713	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.928571
smooth_muscle_cell_derived_from_H9	chr19	15256215	15256236	15256235	-	RAMPAGE_only	3	3	7	0.244708	2.521641	chr19	15256082	15256220	LINE|L1|L1M5	-	chr19	15235518	15280451	BRD4|ENST00000263377.6	-	15235518,15238742,15239058,15239391,15239658,15239909,15242899,15244230,15244709,15254151,15255296,15256063,15256963,15263419,15264403,15265353,15267415,15268904,15272814,15280263	15238445,15238980,15239264,15239522,15239821,15240022,15243487,15244600,15244762,15254262,15255592,15256263,15257173,15263548,15264766,15265643,15267551,15269042,15273133,15280451	1.000000
smooth_muscle_cell_derived_from_H9	chr7	99410087	99410129	99410128	+	High_confidence	4	4	21	0.734125	3.196155	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.952381
smooth_muscle_cell_derived_from_H9	chr20	45000136	45000153	45000136	+	RAMPAGE_only	5	5	13	0.454458	2.968919	chr20	45000046	45000146	DNA|hAT-Charlie|MER20B	-	chr20	44966521	45075608	STK4|ENST00000372801.5	+	44966521,44972077,44978442,44981828,44987131,44995089,44997168,45000391,45001166,45024972,45053085,45075017	44966603,44972158,44978571,44981943,44987296,44995257,44997306,45000520,45001353,45025130,45053180,45075608	1.000000
smooth_muscle_cell_derived_from_H9	chr16	71894419	71894426	71894419	+	High_confidence	3	3	8	0.279667	2.500000	chr16	71894254	71894545	SINE|Alu|AluSp	-	chr16	71894407	71930639	IST1|NM_001270976.1	+	71894407,71894720,71915625,71916461,71917046,71920738,71921342,71922473,71923287,71924768,71927613	71894481,71894858,71915728,71916642,71917134,71920822,71921453,71922680,71923380,71924817,71930639	1.000000
smooth_muscle_cell_derived_from_H9	chr2	3536822	3536882	3536862	-	High_confidence	7	8	38	1.328417	4.240963	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.894737
smooth_muscle_cell_derived_from_H9	chr13	22040825	22040845	22040825	+	High_confidence	5	5	14	0.489417	3.180833	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.714286
smooth_muscle_cell_derived_from_H9	chr12	108630676	108630696	108630676	-	RAMPAGE_only	4	5	9	0.314625	2.947703	chr12	108630567	108630719	SINE|MIR|MIRc	+	chr12	108621894	108632078	SELPLG|NM_001206609.1	-	108621894,108631858	108624312,108632078	0.888889
smooth_muscle_cell_derived_from_H9	chr7	87039869	87039923	87039869	-	High_confidence	18	19	42	1.468250	4.643943	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86919165	87040221	MSTRG.53875.13	-	86919165,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755,87040102	86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87039871,87040221	0.928571
smooth_muscle_cell_derived_from_H9	chr8	18851534	18851546	18851534	-	RAMPAGE_only	3	5	10	0.349583	2.521928	chr8	18851419	18851578	SINE|tRNA-Deu|AmnSINE2	-	chr8	18765448	18854374	PSD3|ENST00000519851.5	-	18765448,18799294,18801269,18804521,18804703,18854097	18765538,18799353,18801382,18804602,18804898,18854374	0.600000
smooth_muscle_cell_derived_from_H9	chr9	20658568	20658608	20658568	+	High_confidence	11	12	45	1.573125	4.508522	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.622222
smooth_muscle_cell_derived_from_H9	chr5	114433510	114433511	114433510	+	High_confidence	259	261	277	9.683458	5.354195	chr5	114432499	114433929	LTR|ERV1|LTR12C	+	chr5	114433529	114496500	KCNN2|NR_103458.1	+	114433529,114463048,114473053,114486697,114487049,114493402,114495894	114433929,114463190,114473164,114486803,114487177,114493472,114496500	0.931408
smooth_muscle_cell_derived_from_H9	chr8	61578141	61578142	61578141	+	High_confidence	871	877	889	31.077956	5.851173	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.984252
smooth_muscle_cell_derived_from_H9	chr1	19344364	19344429	19344364	-	RAMPAGE_only	10	10	63	2.202375	4.225029	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.968254
smooth_muscle_cell_derived_from_H9	chr9	73158141	73158185	73158184	+	High_confidence	4	4	13	0.454458	2.565448	chr9	73158106	73158195	LINE|L2|L2c	+	chr9	73157653	73170393	ANXA1|ENST00000376911.1	+	73157653,73158694,73159328,73160262,73160802,73162781,73163475,73165115,73166096,73167496,73169031,73170050	73158601,73158803,73159423,73160376,73160893,73162861,73163532,73165209,73166192,73167555,73169154,73170393	0.846154
smooth_muscle_cell_derived_from_H9	chr8	68858118	68858119	68858118	-	RAMPAGE_only	14	17	17	0.594292	3.572469	chr8	68857963	68858314	LTR|ERVL-MaLR|THE1A	-	chr8	68848741	68852763	AC083967.1|ENST00000522354.1	-	68848741,68849950,68852700	68849098,68850045,68852763	0.647059
smooth_muscle_cell_derived_from_H9	chr22	36481305	36481335	36481311	-	High_confidence	7	9	35	1.223542	3.297019	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.800000
smooth_muscle_cell_derived_from_H9	chr14	40954443	40954548	40954443	+	High_confidence	17	18	146	5.103916	5.853912	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954445	41142115	MSTRG.16717.2	+	40954445,40962789,40974339,41140833	40954952,40962842,40974390,41142115	0.630137
smooth_muscle_cell_derived_from_H9	chr3	98733184	98733231	98733230	+	High_confidence	7	7	36	1.258500	4.138502	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.888889
smooth_muscle_cell_derived_from_H9	chr7	134714062	134714077	134714062	+	RAMPAGE_only	11	11	23	0.804042	4.106603	chr7	134713876	134714267	LTR|ERVL-MaLR|MSTA	+	chr7	134711438	134960056	MSTRG.55101.1	+	134711438,134745507,134843883,134867692,134928753,134932987,134941091,134947507,134950373,134958068,134958208,134959973	134711597,134745572,134843971,134867804,134928900,134933390,134941237,134947769,134950514,134958112,134958290,134960056	0.739130
smooth_muscle_cell_derived_from_H9	chr5	82315594	82315599	82315598	+	RAMPAGE_only	4	5	8	0.279667	2.750000	chr5	82315374	82315613	LINE|RTE-X|L4_A_Mam	-	chr5	82310035	82318380	ATP6AP1L|ENST00000514672.1	+	82310035,82312610,82317997	82310207,82312851,82318380	0.500000
smooth_muscle_cell_derived_from_H9	chr19	5680234	5680252	5680240	-	High_confidence	15	16	90	3.146250	5.247821	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.977778
smooth_muscle_cell_derived_from_H9	chr20	8600626	8600661	8600634	+	High_confidence	9	10	36	1.258500	3.607735	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.972222
smooth_muscle_cell_derived_from_H9	chr9	84368693	84368727	84368693	-	High_confidence	2	2	8	0.279667	2.500000	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	1.000000
smooth_muscle_cell_derived_from_H9	chr2	190760500	190760501	190760500	-	High_confidence	454	459	477	16.675124	6.472880	chr2	190760093	190761528	LTR|ERV1|LTR12C	-	chr2	190760091	190760476	MSTRG.32817.1	-	190760091	190760476	0.624738
smooth_muscle_cell_derived_from_H9	chr5	997305	997328	997318	-	High_confidence	2	2	9	0.314625	2.725481	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	1.000000
smooth_muscle_cell_derived_from_H9	chr15	82749701	82749703	82749702	+	RAMPAGE_only	54	73	104	3.635666	5.701468	chr15	82749521	82749958	LTR|ERVL-MaLR|MLT1C	+	chr15	82744222	82750289	AC105339.3|ENST00000558342.1	+	82744222,82749295	82744319,82750289	0.759615
smooth_muscle_cell_derived_from_H9	chr7	137254956	137254971	137254970	-	RAMPAGE_only	4	5	12	0.419500	3.251629	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	1.000000
smooth_muscle_cell_derived_from_H9	chr6	143964788	143964807	143964788	-	High_confidence	2	2	9	0.314625	2.947703	chr6	143964544	143965292	LTR|Gypsy|MamGyp-int	+	chr6	143940337	143964868	PLAGL1|ENST00000367572.3	-	143940337,143960468,143964786	143942663,143960556,143964868	0.777778
smooth_muscle_cell_derived_from_H9	chr1	166850222	166850235	166850222	+	RAMPAGE_only	6	6	18	0.629250	3.337175	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.833333
smooth_muscle_cell_derived_from_H9	chr11	75979761	75979783	75979761	+	High_confidence	5	5	19	0.664208	3.392147	chr11	75974665	75980018	LINE|L1|L1PA6	-	chr11	75979525	76142651	UVRAG|ENST00000531818.5	+	75979525,75983386,76004004,76007533,76008806,76016814,76065709,76115923,76140710	75980038,75983513,76004089,76007621,76008867,76016980,76065788,76116015,76142651	0.947368
smooth_muscle_cell_derived_from_H9	chr15	90414953	90414983	90414953	+	RAMPAGE_only	4	4	21	0.734125	3.689704	chr15	90414364	90414959	LINE|L2|L2	+	chr15	90388276	90440528	IQGAP1|ENST00000560418.1	+	90388276,90426109,90429588,90431220,90433718,90439331,90440501	90388396,90426266,90429666,90431252,90433795,90439399,90440528	0.619048
smooth_muscle_cell_derived_from_H9	chr3	188153206	188153210	188153206	+	High_confidence	4	4	11	0.384542	2.550341	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.818182
smooth_muscle_cell_derived_from_H9	chr9	20658312	20658347	20658312	+	High_confidence	59	63	323	11.291541	5.995404	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20770112	MSTRG.58981.2	+	20658308,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.832817
smooth_muscle_cell_derived_from_H9	chr4	119279625	119279636	119279635	+	RAMPAGE_only	4	4	12	0.419500	3.022055	chr4	119274113	119280127	LINE|L1|L1PA2	-	chr4	119239639	119294638	USP53|ENST00000509769.5	+	119239639,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119266299,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119266333,119267482,119268420,119269837,119272034,119273708,119291261,119294638	0.750000
smooth_muscle_cell_derived_from_H9	chr2	71024055	71024096	71024055	+	High_confidence	7	7	27	0.943875	3.782122	chr2	71020399	71024471	LTR|ERV1|HERVE-int	+	chr2	71024074	71029931	OR7E91P|NR_002185.3	+	71024074,71024305,71028915	71024200,71024394,71029931	0.925926
smooth_muscle_cell_derived_from_H9	chr9	29450770	29450838	29450837	-	High_confidence	13	13	42	1.468250	4.377567	chr9	29450392	29451920	LINE|L1|L1PA3	+	chr9	29450130	29450820	MSTRG.59145.1	-	29450130	29450820	0.547619
smooth_muscle_cell_derived_from_H9	chr7	134320335	134320352	134320351	-	RAMPAGE_only	8	9	22	0.769083	3.140361	chr7	134320061	134320513	LTR|ERVL-MaLR|MLT1F	-	chr7	134289336	134317075	SLC35B4|NM_032826.4	-	134289336,134296390,134299522,134300151,134301760,134302028,134304804,134306671,134309365,134316674	134295079,134296466,134299598,134300261,134301821,134302110,134304854,134306774,134309479,134317075	0.636364
smooth_muscle_cell_derived_from_H9	chr11	64226142	64226180	64226158	-	High_confidence	213	219	869	30.378789	7.420783	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.983890
smooth_muscle_cell_derived_from_H9	chr7	40386397	40386398	40386397	+	RAMPAGE_only	19	20	22	0.769083	3.880180	chr7	40386258	40386473	LTR|Gypsy|MamGypLTR1b	-	chr7	40134976	40860763	SUGCT|ENST00000335693.8	+	40134976,40180946,40181954,40188494,40189543,40194939,40237634,40274512,40316759,40449286,40459100,40496283,40749433,40860315	40135120,40180998,40182028,40188580,40189594,40195060,40237726,40274656,40316855,40449358,40459198,40496386,40749497,40860763	0.727273
smooth_muscle_cell_derived_from_H9	chr3	57197108	57197110	57197109	+	RAMPAGE_only	12	19	28	0.978833	3.664498	chr3	57196989	57197284	SINE|Alu|AluYc	-	chr3	57227725	57278105	APPL1|ENST00000650354.1	+	57227725,57235565,57237491,57238044,57240464,57242100,57242855,57246075,57247394,57248192,57249359,57252268,57253681,57256956,57257245,57259027,57259844,57260116,57260627,57267741,57268397,57269540,57276303,57277792	57227937,57235664,57237551,57238116,57240552,57242142,57242914,57246222,57247477,57248351,57249548,57252311,57253738,57257051,57257428,57259080,57260019,57260153,57260774,57267792,57268487,57269751,57276459,57278105	0.857143
smooth_muscle_cell_derived_from_H9	chr11	76669762	76669763	76669762	-	High_confidence	10	10	12	0.419500	2.913977	chr11	76669703	76669860	SINE|MIR|MIRb	-	chr11	76657523	76670000	LRRC32|NM_005512.2	-	76657523,76665870,76669761	76661508,76665958,76670000	0.750000
smooth_muscle_cell_derived_from_H9	chr20	37344685	37344708	37344695	+	High_confidence	6	8	16	0.559333	3.506891	chr20	37344715	37344779	SINE|MIR|MIRc	+	chr20	37344684	37405432	SRC|NM_005417.4	+	37344684,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.625000
smooth_muscle_cell_derived_from_H9	chr20	35307050	35307070	35307069	-	High_confidence	4	4	8	0.279667	2.750000	chr20	35306926	35307046	SINE|MIR|MIR3	-	chr20	35302565	35307082	UQCC1|ENST00000472559.5	-	35302565,35306665	35304069,35307082	1.000000
smooth_muscle_cell_derived_from_H9	chr22	37849312	37849333	37849317	-	High_confidence	29	29	124	4.334833	4.932497	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.991935
smooth_muscle_cell_derived_from_H9	chr2	200888574	200888598	200888597	-	High_confidence	6	6	16	0.559333	3.250000	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.875000
smooth_muscle_cell_derived_from_H9	chr1	209429016	209429062	209429016	+	High_confidence	3	3	24	0.839000	3.720176	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.875000
smooth_muscle_cell_derived_from_H9	chr7	101217578	101217599	101217587	-	High_confidence	18	18	95	3.321041	5.562478	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.989474
smooth_muscle_cell_derived_from_H9	chr16	15006403	15006445	15006403	+	RAMPAGE_only	3	6	23	0.804042	3.558519	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	14997747	15038323	PDXDC1|ENST00000450288.3	+	14997747,14998339,15006393,15008778,15009680,15016128,15017119,15017320,15018839,15022703,15026642,15028877,15029950,15031734,15032860,15033277,15034285,15034456,15035448,15036015	14997826,14998405,15006583,15008847,15009759,15016213,15017168,15017422,15018965,15022754,15026706,15028966,15030056,15031906,15032979,15033399,15034378,15034553,15035553,15038323	0.695652
smooth_muscle_cell_derived_from_H9	chr5	150640033	150640042	150640038	+	High_confidence	5	5	13	0.454458	3.251629	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150640320	150656751	MSTRG.47710.8	+	150640320,150647943,150656403	150640425,150650303,150656751	0.923077
smooth_muscle_cell_derived_from_H9	chr12	122064297	122064333	122064327	+	RAMPAGE_only	10	14	54	1.887750	4.794297	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.555556
smooth_muscle_cell_derived_from_H9	chr9	33068823	33068851	33068823	-	RAMPAGE_only	4	4	18	0.629250	2.816308	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.944444
smooth_muscle_cell_derived_from_H9	chr4	170259887	170259914	170259912	+	RAMPAGE_only	6	9	21	0.734125	3.681881	chr4	170259715	170259944	LTR|ERVL|LTR33C	-	chr4	170273918	170283079	LINC01612|ENST00000504509.1	+	170273918,170276581,170282750	170273964,170276675,170283079	0.666667
smooth_muscle_cell_derived_from_H9	chr11	26965307	26965326	26965320	-	High_confidence	2	2	11	0.384542	2.721928	chr11	26965118	26971134	LINE|L1|L1PA2	+	chr11	26670501	26965319	MSTRG.8728.2	-	26670501,26673401,26678711,26681054,26683756,26686476,26692488,26697163,26698405,26703530,26703792,26709311,26711306,26712640,26965095	26671251,26673529,26678815,26681221,26683843,26686544,26692601,26697252,26698535,26703671,26703947,26709379,26711358,26712706,26965319	0.818182
smooth_muscle_cell_derived_from_H9	chrX	23883659	23883692	23883659	-	High_confidence	3	4	14	0.489417	2.931209	chrX	23883103	23883918	LTR|ERV1|LTR1A1	+	chrX	23856355	23884019	APOO|ENST00000633372.1	-	23856355,23858641,23868592,23874402,23878914,23880844,23883358	23856382,23858733,23868688,23874457,23879034,23880952,23884019	0.642857
smooth_muscle_cell_derived_from_H9	chr11	17282895	17282940	17282939	+	RAMPAGE_only	11	11	39	1.363375	4.284901	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.923077
smooth_muscle_cell_derived_from_H9	chr6	2990742	2990749	2990748	-	RAMPAGE_only	16	17	34	1.188583	3.669119	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.941176
smooth_muscle_cell_derived_from_H9	chr1	220032396	220032415	220032396	-	RAMPAGE_only	4	8	12	0.419500	2.625815	chr1	220032081	220032353	SINE|Alu|AluY	-	chr1	219987295	220046451	EPRS|ENST00000609181.5	-	219987295,219988589,219996982,220001137,220005247,220006105,220007201,220010945,220018125,220018448,220018994,220019987,220022346,220024263,220025131,220030385,220032386,220033501,220034913,220040184,220046342	219987404,219988823,219997342,220001255,220005360,220006313,220007338,220011056,220018146,220018508,220019079,220020221,220022518,220024456,220025258,220030480,220032526,220033658,220035013,220040269,220046451	1.000000
smooth_muscle_cell_derived_from_H9	chr9	26976676	26976693	26976676	+	RAMPAGE_only	6	6	20	0.699167	3.576618	chr9	26976272	26976760	LTR|ERV1|LTR10B2	-	chr9	26956478	27036800	IFT74|ENST00000429045.6	+	26956478,26961948,26978127,26980570,26984256,26984498,26988668,26990133,27009019,27011905,27016906,27018646,27029024,27036449	26956516,26962087,26978263,26980619,26984355,26984559,26988728,26990195,27009158,27011968,27017050,27018687,27029104,27036800	0.700000
smooth_muscle_cell_derived_from_H9	chr20	46363941	46363984	46363963	-	High_confidence	16	17	68	2.377166	4.952820	chr20	46363820	46363964	LINE|L2|L2a	+	chr20	46363341	46363737	MSTRG.35018.1	-	46363341	46363737	0.779412
smooth_muscle_cell_derived_from_H9	chr3	178860433	178860451	178860440	-	High_confidence	8	8	18	0.629250	2.631293	chr3	178859948	178865979	LINE|L1|L1PA2	+	chr3	178525466	178860405	KCNMB2-AS1|NR_126560.1	-	178525466,178535713,178537260,178748403,178749045,178757079,178859488,178860293	178526625,178535899,178537396,178748485,178749236,178757133,178859623,178860405	0.888889
smooth_muscle_cell_derived_from_H9	chr4	139715576	139715583	139715582	-	High_confidence	3	3	8	0.279667	2.521641	chr4	139715430	139715980	LTR|ERV1|MER41A	-	chr4	139714218	139715405	MSTRG.43984.1	-	139714218	139715405	0.750000
smooth_muscle_cell_derived_from_H9	chr17	75742646	75742749	75742748	+	High_confidence	10	15	89	3.111291	4.705107	chr17	75742779	75742995	SINE|MIR|MIRb	+	chr17	75742423	75749045	ITGB4|ENST00000584025.1	+	75742423,75743712,75746263,75748840	75742761,75743861,75746375,75749045	0.629213
smooth_muscle_cell_derived_from_H9	chr5	150137408	150137421	150137408	-	High_confidence	11	11	30	1.048750	4.159200	chr5	150137246	150137416	SINE|MIR|MIR3	+	chr5	150134856	150137437	PDGFRB|ENST00000517957.1	-	150134856,150135554,150137007,150137399	150135016,150135878,150137053,150137437	0.700000
smooth_muscle_cell_derived_from_H9	chr6	114011310	114011311	114011310	-	High_confidence	2194	2198	2564	89.633160	6.133089	chr6	114011169	114011436	LTR|ERV1|MER51B	-	chr6	113945379	114011308	MSTRG.50718.6	-	113945379,113946007,113948978,113949167,113953276,113956012,113956618,113958648,113959905,113962366,114000000,114009990,114011130	113945470,113946148,113949087,113949260,113953418,113956151,113956693,113958766,113960018,113962394,114000099,114010117,114011308	0.906786
smooth_muscle_cell_derived_from_H9	chr3	149388287	149388288	149388287	+	High_confidence	94	107	121	4.229958	5.990206	chr3	149388131	149388364	SINE|MIR|MIR	-	chr3	149388308	149388717	MSTRG.40571.1	+	149388308	149388717	0.504132
smooth_muscle_cell_derived_from_H9	chr12	108339913	108339949	108339913	-	High_confidence	6	6	21	0.734125	3.616349	chr12	108339641	108339928	LINE|L2|L2b	+	chr12	108291670	108339896	MSTRG.13904.5	-	108291670,108293588,108329994,108339026,108339846	108292959,108293664,108330207,108339153,108339896	0.904762
smooth_muscle_cell_derived_from_H9	chr17	60887013	60887083	60887049	+	High_confidence	3	3	23	0.804042	3.936260	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.913043
smooth_muscle_cell_derived_from_H9	chr5	55982731	55982800	55982799	-	High_confidence	40	41	179	6.257541	5.735408	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.983240
smooth_muscle_cell_derived_from_H9	chr4	74449122	74449136	74449122	+	RAMPAGE_only	12	12	32	1.118667	3.573391	chr4	74449070	74449168	LINE|L1|L1MEf	+	chr4	74445687	74455005	MSTRG.42817.3	+	74445687,74446533,74449046,74450379,74452543,74454758	74445712,74446782,74449248,74450532,74452655,74455005	1.000000
smooth_muscle_cell_derived_from_H9	chr5	82309765	82309773	82309765	+	High_confidence	3	3	12	0.419500	2.688722	chr5	82309631	82310096	LINE|L1|L1ME1	-	chr5	82309774	82318328	MSTRG.46199.6	+	82309774,82310156,82312610,82317997	82309868,82310207,82312851,82318328	0.583333
smooth_muscle_cell_derived_from_H9	chr12	91353190	91353285	91353190	-	RAMPAGE_only	37	38	241	8.424958	6.211616	chr12	91353109	91353281	LTR|ERVL-MaLR|MLT1A0	-	chr12	91143276	91183124	DCN|NM_001920.4	-	91143276,91151653,91153095,91157074,91158295,91164604,91178341,91182654	91146252,91151792,91153189,91157188,91158509,91164717,91178585,91183124	0.887967
smooth_muscle_cell_derived_from_H9	chr8	143281669	143281687	143281686	-	High_confidence	39	42	94	3.286083	4.155973	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.829787
smooth_muscle_cell_derived_from_H9	chr3	134485387	134485450	134485449	-	High_confidence	12	17	85	2.971458	5.293463	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.988235
smooth_muscle_cell_derived_from_H9	chr20	37297342	37297345	37297344	+	High_confidence	12	21	28	0.978833	3.648432	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.964286
smooth_muscle_cell_derived_from_H9	chr10	79399641	79399653	79399652	-	RAMPAGE_only	6	7	12	0.419500	2.918296	chr10	79399514	79399644	SINE|MIR|MIR3	-	chr10	79386036	79444219	ZCCHC24|ENST00000372333.3	-	79386036,79394275,79432557,79444101	79386458,79394440,79432758,79444219	0.500000
smooth_muscle_cell_derived_from_H9	chr14	100771449	100771455	100771454	+	High_confidence	4	4	10	0.349583	2.725481	chr14	100771097	100771609	LTR|ERV1|MER34	-	chr14	100771463	100771834	MSTRG.18147.1	+	100771463	100771834	0.600000
smooth_muscle_cell_derived_from_H9	chr22	32835546	32835555	32835554	+	RAMPAGE_only	12	12	19	0.664208	3.836592	chr22	32835254	32835610	LINE|L2|L2b	-	chr22	32801700	32863043	TIMP3|ENST00000266085.6	+	32801700,32849451,32857248,32858016,32859179	32802122,32849534,32857360,32858138,32863043	0.526316
smooth_muscle_cell_derived_from_H9	chr15	49396144	49396181	49396180	-	High_confidence	10	11	49	1.712958	4.898456	chr15	49395983	49402014	LINE|L1|L1PA2	+	chr15	49326961	49396442	FAM227B|ENST00000559573.3	-	49326961,49331779,49371301,49395974,49396243	49328675,49331849,49371399,49396097,49396442	0.857143
smooth_muscle_cell_derived_from_H9	chr17	51153852	51153859	51153852	+	High_confidence	5	5	11	0.384542	2.921928	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51153664	51161898	NME1|ENST00000013034.3	+	51153664,51154224,51155650,51159979,51161159,51161727	51153724,51154444,51155780,51160081,51161272,51161898	0.727273
smooth_muscle_cell_derived_from_H9	chr11	134037644	134037645	134037644	+	RAMPAGE_only	6	6	9	0.314625	2.725481	chr11	134037531	134037645	SINE|MIR|MIR3	-	chr11	134032651	134038975	AP000911.1|ENST00000529070.1	+	134032651,134037511	134032860,134038975	0.888889
smooth_muscle_cell_derived_from_H9	chr1	45522858	45522859	45522858	-	High_confidence	23	23	30	1.048750	4.211261	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.966667
smooth_muscle_cell_derived_from_H9	chr12	89449220	89449225	89449220	-	High_confidence	68	86	197	6.886791	5.204899	chr12	89449194	89449260	SINE|MIR|MIRc	+	chr12	89419717	89449241	MSTRG.13490.1	-	89419717,89425160,89449071	89421257,89425379,89449241	0.913706
smooth_muscle_cell_derived_from_H9	chr19	51027648	51027684	51027667	-	High_confidence	6	6	20	0.699167	3.181366	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.750000
smooth_muscle_cell_derived_from_H9	chrX	20026419	20026441	20026419	-	High_confidence	11	12	36	1.258500	3.781818	chrX	20026328	20026400	LINE|L1|L1MB3	-	chrX	20021347	20025943	MAP7D2|ENST00000466145.1	-	20021347,20024950,20025680	20021549,20025083,20025943	0.972222
smooth_muscle_cell_derived_from_H9	chr3	110880971	110881161	110881148	-	RAMPAGE_only	14	15	158	5.523416	4.484992	chr3	110881040	110881515	LTR|ERVL-MaLR|MLT1G1	+	chr3	110819784	110893476	MSTRG.39434.5	-	110819784,110889425,110893137	110889209,110892603,110893476	1.000000
smooth_muscle_cell_derived_from_H9	chr11	102746999	102747010	102746999	+	RAMPAGE_only	8	8	13	0.454458	2.931209	chr11	102741437	102747464	LINE|L1|L1PA3	-	chr11	102783675	102836766	WTAPP1|ENST00000525739.6	+	102783675,102793144,102795147,102798023,102830731,102831467,102833451,102836437	102784064,102793261,102795224,102798122,102830810,102832906,102833564,102836766	0.692308
smooth_muscle_cell_derived_from_H9	chr4	75127261	75127307	75127298	-	RAMPAGE_only	37	38	92	3.216166	4.478225	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.945652
smooth_muscle_cell_derived_from_H9	chr5	102671627	102671720	102671672	-	High_confidence	21	25	137	4.789291	5.629761	chr5	102671229	102677260	LINE|L1|L1PA2	+	chr5	102609155	102671559	LINC00491|ENST00000510145.1	-	102609155,102671226	102609766,102671559	0.686131
smooth_muscle_cell_derived_from_H9	chr7	98329369	98329405	98329404	-	RAMPAGE_only	16	17	30	1.048750	3.978334	chr7	98329147	98330304	LINE|L1|L1MCa	+	chr7	98317236	98355426	BAIAP2L1|ENST00000473569.1	-	98317236,98320057,98320236,98355041	98317356,98320129,98320298,98355426	0.600000
smooth_muscle_cell_derived_from_H9	chr1	187631070	187631071	187631070	+	High_confidence	37	45	48	1.678000	5.080873	chr1	187630701	187631191	LTR|ERV1|LTR10B2	+	chr1	187631066	187633459	MSTRG.4118.1	+	187631066,187633102	187631460,187633459	0.729167
smooth_muscle_cell_derived_from_H9	chr7	6590246	6590284	6590246	+	High_confidence	3	3	30	1.048750	3.989898	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.600000
smooth_muscle_cell_derived_from_H9	chrX	47179145	47179159	47179145	+	High_confidence	5	5	17	0.594292	3.101881	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	1.000000
smooth_muscle_cell_derived_from_H9	chr19	9140390	9140428	9140427	+	High_confidence	46	46	192	6.711999	6.227668	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.729167
smooth_muscle_cell_derived_from_H9	chr7	39013053	39013063	39013062	+	High_confidence	5	5	10	0.349583	2.725481	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.700000
smooth_muscle_cell_derived_from_H9	chr1	65218896	65218902	65218901	+	RAMPAGE_only	4	4	8	0.279667	2.500000	chr1	65218928	65219138	LINE|L1|L1M5	+	chr1	65165931	65226429	AK4|ENST00000479060.1	+	65165931,65190709,65218753,65224751,65226062	65166019,65190829,65218926,65224870,65226429	0.500000
smooth_muscle_cell_derived_from_H9	chr10	17660512	17660547	17660546	+	RAMPAGE_only	6	6	13	0.454458	2.873141	chr10	17660583	17660772	SINE|Alu|AluJo	+	chr10	17644207	17700221	STAM|ENST00000377500.1	+	17644207,17688026,17693221,17695048,17696774,17700190	17644379,17688173,17693312,17695241,17696869,17700221	1.000000
smooth_muscle_cell_derived_from_H9	chr5	55851369	55851398	55851369	+	High_confidence	7	7	32	1.118667	4.143893	chr5	55851124	55851720	DNA|TcMar-Tigger|Tigger17a	-	chr5	55851378	55909141	IL31RA|NM_001297570.1	+	55851378,55859508,55868790,55872269,55883043,55889969,55896349,55899915,55906105,55907358,55908264	55851633,55859599,55868908,55872451,55883195,55890135,55896429,55900132,55906288,55907460,55909141	0.750000
smooth_muscle_cell_derived_from_H9	chr10	29142628	29142680	29142660	+	High_confidence	29	37	197	6.886791	4.620559	chr10	29142530	29143374	LTR|ERV1|LTR1A2	+	chr10	29142637	29144046	MSTRG.5866.1	+	29142637,29143607	29143087,29144046	0.969543
smooth_muscle_cell_derived_from_H9	chr5	151158498	151158518	151158498	-	High_confidence	16	16	40	1.398333	4.422574	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.650000
smooth_muscle_cell_derived_from_H9	chr5	38881718	38881741	38881731	+	RAMPAGE_only	3	3	9	0.314625	2.750000	chr5	38881676	38881753	SINE|tRNA-Deu|AmnSINE2	+	chr5	38845998	38886739	OSMR|NM_001323504.1	+	38845998,38869031,38876200,38881592,38883826,38885348,38886038	38846387,38869117,38876373,38881764,38884111,38885484,38886739	0.777778
smooth_muscle_cell_derived_from_H9	chr3	146143979	146143982	146143981	-	RAMPAGE_only	7	10	15	0.524375	2.521641	chr3	146143788	146144234	LINE|L2|L2a	+	chr3	146110299	146160991	PLOD2|ENST00000480704.1	-	146110299,146121111,146123264,146124137,146160880	146110448,146121248,146123325,146124229,146160991	0.733333
smooth_muscle_cell_derived_from_H9	chr22	26512107	26512138	26512107	-	High_confidence	3	3	12	0.419500	2.688722	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	1.000000
smooth_muscle_cell_derived_from_H9	chr11	26965532	26965560	26965532	-	High_confidence	4	4	25	0.873958	2.723216	chr11	26965118	26971134	LINE|L1|L1PA2	+	chr11	26670501	26965319	MSTRG.8728.2	-	26670501,26673401,26678711,26681054,26683756,26686476,26692488,26697163,26698405,26703530,26703792,26709311,26711306,26712640,26965095	26671251,26673529,26678815,26681221,26683843,26686544,26692601,26697252,26698535,26703671,26703947,26709379,26711358,26712706,26965319	0.960000
smooth_muscle_cell_derived_from_H9	chr7	80917401	80917426	80917401	-	RAMPAGE_only	6	6	18	0.629250	3.239098	chr7	80917362	80917475	SINE|tRNA|LFSINE_Vert	-	chr7	80827429	80918429	SEMA3C|ENST00000411788.5	-	80827429,80828584,80905828,80916678,80918300	80827487,80828745,80905916,80916819,80918429	0.944444
smooth_muscle_cell_derived_from_H9	chr2	160195415	160195439	160195438	-	RAMPAGE_only	2	3	7	0.244708	2.584963	chr2	160195366	160195442	LINE|CR1|L3	-	chr2	160101635	160200252	ITGB6|ENST00000428609.6	-	160101635,160107678,160112079,160123790,160126378,160137433,160138064,160141981,160169211,160172568,160173973,160195368,160196215,160200002	160101834,160107845,160112199,160123888,160126601,160137851,160138199,160142071,160169307,160172730,160174139,160195615,160196420,160200252	0.857143
smooth_muscle_cell_derived_from_H9	chr10	133369963	133369977	133369963	-	RAMPAGE_only	3	3	6	0.209750	2.584963	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
smooth_muscle_cell_derived_from_H9	chr13	111337573	111337578	111337577	+	High_confidence	3	3	7	0.244708	2.521641	chr13	111337198	111337649	LTR|ERVL-MaLR|MLT1F	-	chr13	111337461	111344149	MSTRG.15795.3	+	111337461,111339862,111342755,111344082	111337671,111339932,111342931,111344149	0.571429
smooth_muscle_cell_derived_from_H9	chr21	44485565	44485568	44485567	+	High_confidence	29	52	59	2.062542	5.017905	chr21	44485339	44486157	LTR|ERV1|LTR1A2	+	chr21	44485576	44490288	LINC02575|ENST00000449713.1	+	44485576,44490030	44486230,44490288	0.966102
smooth_muscle_cell_derived_from_H9	chr5	77491284	77491285	77491284	-	High_confidence	7	7	7	0.244708	2.521641	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77453865	77491285	WDR41|ENST00000504895.5	-	77453865,77459061,77463094,77464760,77489456,77491192	77453928,77459124,77463226,77464809,77489572,77491285	0.857143
smooth_muscle_cell_derived_from_H9	chr8	83912693	83912694	83912693	+	High_confidence	1528	1540	1635	57.156870	7.813852	chr8	83912425	83912831	LTR|ERVK|LTR14B	+	chr8	83912702	83980586	MSTRG.57097.5	+	83912702,83954322,83967327,83976755,83979924	83912835,83954437,83975302,83978766,83980586	0.820183
smooth_muscle_cell_derived_from_H9	chr5	147382883	147382900	147382899	+	High_confidence	11	11	44	1.538167	3.876806	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.636364
smooth_muscle_cell_derived_from_H9	chr12	42091950	42091967	42091950	-	RAMPAGE_only	5	5	12	0.419500	2.522055	chr12	42091844	42092117	LINE|L2|L2c	+	chr12	42087144	42144712	GXYLT1|ENST00000280876.6	-	42087144,42097441,42097909,42105817,42109565,42118999,42144425	42087947,42097614,42098033,42106069,42109691,42119171,42144712	1.000000
smooth_muscle_cell_derived_from_H9	chr2	234682619	234682652	234682651	+	High_confidence	6	6	37	1.293458	4.499598	chr2	234682602	234682802	LTR|ERVL-MaLR|MLT1H	-	chr2	234682667	234717764	LINC01173|NR_132376.1	+	234682667,234695648,234717634	234682768,234695748,234717764	0.675676
smooth_muscle_cell_derived_from_H9	chr14	100903320	100903379	100903378	-	High_confidence	5	5	26	0.908917	3.559080	chr14	100903254	100903417	LINE|L2|L2b	-	chr14	100879752	100903722	RTL1|ENST00000649591.1	-	100879752,100893443,100903290,100903604	100884874,100893505,100903386,100903722	0.961538
smooth_muscle_cell_derived_from_H9	chr5	133124484	133124485	133124484	-	RAMPAGE_only	61	61	62	2.167416	4.193766	chr5	133124115	133124701	LTR|ERVL|MLT2B3	-	chr5	133111054	133114475	AC113410.2|ENST00000507389.1	-	133111054,133114258	133111515,133114475	0.983871
smooth_muscle_cell_derived_from_H9	chr6	79631254	79631303	79631302	+	High_confidence	133	134	472	16.500332	6.242846	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.993644
smooth_muscle_cell_derived_from_H9	chr9	135644915	135644954	135644953	+	High_confidence	4	5	13	0.454458	2.873141	chr9	135644566	135645131	LTR|ERV1|LTR10B1	+	chr9	135645016	135666628	MSTRG.61262.3	+	135645016,135650303,135657275,135661832,135664161,135664721,135665244,135665650,135665860,135666413	135648955,135650374,135660682,135663417,135664298,135664795,135665355,135665752,135665908,135666628	1.000000
smooth_muscle_cell_derived_from_H9	chr19	20423697	20423704	20423697	-	RAMPAGE_only	14	15	43	1.503208	4.228363	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.767442
smooth_muscle_cell_derived_from_H9	chr8	11795578	11795579	11795578	+	High_confidence	892	905	1020	35.657497	5.207011	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.981373
smooth_muscle_cell_derived_from_H9	chrX	10589766	10589963	10589962	-	High_confidence	1249	1276	1919	67.085036	7.192161	chrX	10589852	10590340	LTR|ERV1|LTR2B	-	chrX	10445555	10589909	MID1|ENST00000380780.5	-	10445555,10454869,10459645,10469696,10474622,10482479,10495583,10523091,10566887,10589586	10449716,10455077,10459807,10469840,10474750,10482628,10495691,10523187,10567603,10589909	0.817092
smooth_muscle_cell_derived_from_H9	chr11	33141728	33141753	33141750	-	RAMPAGE_only	4	6	20	0.699167	3.384184	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33084583	33161465	CSTF3|ENST00000323959.8	-	33084583,33085712,33085894,33086987,33090531,33092270,33096305,33096834,33098689,33099033,33099607,33102176,33103106,33105566,33105882,33105997,33107902,33108385,33141666,33141884,33161298	33085289,33085773,33085989,33087141,33090727,33092340,33096408,33096978,33098764,33099150,33099717,33102339,33103184,33105693,33105917,33106064,33108000,33108418,33141762,33141986,33161465	0.950000
smooth_muscle_cell_derived_from_H9	chr4	69051223	69051230	69051229	+	High_confidence	14	14	23	0.804042	3.015139	chr4	69050859	69051337	LTR|ERV1|LTR2B	+	chr4	69051362	69108227	UGT2B7|ENST00000502942.5	+	69051362,69089471,69098539,69102806,69107174,69108102	69051602,69089603,69098688,69102938,69107262,69108227	0.608696
smooth_muscle_cell_derived_from_H9	chr7	123211355	123211357	123211356	+	RAMPAGE_only	7	15	15	0.524375	2.789898	chr7	123211158	123211525	LTR|ERVL-MaLR|THE1D	+	chr7	123456628	123459856	AC073323.1|ENST00000419832.1	+	123456628,123457398,123459692	123456765,123457548,123459856	0.533333
smooth_muscle_cell_derived_from_H9	chr10	52455292	52455293	52455292	-	High_confidence	10	10	15	0.524375	3.807355	chr10	52454703	52455679	LINE|L2|L2a	+	chr10	52450873	52455272	LNCAROD|ENST00000435813.6	-	52450873,52454585,52455105	52451517,52454749,52455272	0.666667
smooth_muscle_cell_derived_from_H9	chr16	65053813	65053904	65053813	-	RAMPAGE_only	22	23	159	5.558375	5.333130	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.761006
smooth_muscle_cell_derived_from_H9	chr14	21003776	21003777	21003776	+	High_confidence	266	268	276	9.648499	6.889323	chr14	21003287	21003917	LTR|ERV1|PABL_A	+	chr14	21003775	21029406	MSTRG.16095.2	+	21003775,21019723,21028940	21004122,21019810,21029406	0.565217
smooth_muscle_cell_derived_from_H9	chrX	131579054	131579123	131579122	-	High_confidence	21	21	90	3.146250	4.955943	chrX	131578680	131584735	LINE|L1|L1PA2	+	chrX	131273510	131578899	IGSF1|ENST00000370904.6	-	131273510,131274082,131274598,131274998,131275477,131275960,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286604,131289213,131299650,131304084,131364748,131368367,131368951,131389016,131399573,131578667	131273931,131274206,131274877,131275286,131275765,131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286741,131289275,131299770,131304123,131364926,131368449,131369052,131389148,131399704,131578899	0.822222
smooth_muscle_cell_derived_from_H9	chr7	101624653	101624759	101624758	-	High_confidence	70	71	310	10.837082	6.493601	chr7	101624689	101625117	LINE|L2|L2c	+	chr7	101613335	101624787	MSTRG.54354.2	-	101613335,101613661,101616219,101622095,101622996,101624171,101624625	101613573,101613710,101616298,101622200,101623072,101624264,101624787	0.977419
smooth_muscle_cell_derived_from_H9	chr4	189601053	189601056	189601053	+	High_confidence	26	32	62	2.167416	4.647154	chr4	189601055	189601407	LTR|ERVL|HERVL32-int	+	chr4	189601001	189604528	MSTRG.44822.1	+	189601001,189602179,189603125	189601794,189602242,189604528	0.854839
smooth_muscle_cell_derived_from_H9	chr1	147173173	147173261	147173225	+	High_confidence	13	15	69	2.412125	5.280707	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.797101
smooth_muscle_cell_derived_from_H9	chr11	34692349	34692454	34692453	+	High_confidence	22	25	201	7.026624	5.714474	chr11	34691292	34692830	LINE|L1|L1PA2	-	chr11	34692412	34829420	MSTRG.8894.1	+	34692412,34709270,34714693,34732284,34754457,34829232	34692889,34710854,34715234,34732429,34754607,34829420	0.830846
smooth_muscle_cell_derived_from_H9	chr20	292988	292992	292991	-	RAMPAGE_only	6	10	17	0.594292	3.454822	chr20	292838	293316	LTR|ERVL-MaLR|MLT1L	+	chr20	270862	290778	C20orf96|NM_080571.1	-	270862,275967,276792,277043,277225,278329,279171,283962,289558,290258,290586	271267,276086,276879,277145,277383,278429,279330,284081,289676,290307,290778	0.823529
smooth_muscle_cell_derived_from_H9	chr15	33194695	33194715	33194708	-	High_confidence	12	12	55	1.922708	5.003998	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.763636
smooth_muscle_cell_derived_from_H9	chr6	56528574	56528597	56528574	-	RAMPAGE_only	2	2	10	0.349583	2.721928	chr6	56528561	56528656	SINE|tRNA|LFSINE_Vert	-	chr6	56494064	56541572	DST|ENST00000340834.9	-	56494064,56497378,56497855,56501079,56501519,56503996,56506442,56506666,56508528,56509641,56511196,56515449,56517197,56517500,56526360,56527492,56528840,56529447,56529973,56532343,56535121,56536778,56540279	56494180,56497507,56498053,56501235,56501693,56504098,56506544,56506789,56508755,56509873,56511400,56515668,56517305,56517620,56526567,56527734,56528925,56529774,56530133,56532510,56535292,56536940,56541572	0.500000
smooth_muscle_cell_derived_from_H9	chr5	90929202	90929213	90929202	+	High_confidence	4	6	14	0.489417	3.026987	chr5	90923630	90929658	LINE|L1|L1PA2	-	chr5	90929526	91072579	ADGRV1|ENST00000639707.1	+	90929526,90965414,90985343,91072446	90929661,90965531,90985522,91072579	0.500000
smooth_muscle_cell_derived_from_H9	chr4	110411249	110411335	110411334	+	RAMPAGE_only	13	13	104	3.635666	4.915645	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110365732	110506258	ENPEP|ENST00000510961.1	+	110365732,110488540,110491032,110500028,110506182	110365804,110488682,110491164,110500163,110506258	0.701923
smooth_muscle_cell_derived_from_H9	chr5	152347679	152347680	152347679	-	RAMPAGE_only	12	12	12	0.419500	3.418296	chr5	152347584	152347683	DNA|TcMar-Mariner|MADE1	+	chr5	151661095	151687295	MSTRG.47754.1	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687295	1.000000
smooth_muscle_cell_derived_from_H9	chr6	118586622	118586650	118586622	+	RAMPAGE_only	3	3	14	0.489417	2.950212	chr6	118580329	118588950	LTR|ERV1|HUERS-P3-int	+	chr6	118574401	118590900	MSTRG.50840.3	+	118574401,118576250,118582402	118574699,118577306,118590900	1.000000
smooth_muscle_cell_derived_from_H9	chr7	48000206	48000216	48000215	-	High_confidence	5	5	12	0.419500	2.663533	chr7	48000133	48000438	SINE|Alu|AluSx	-	chr7	47987147	48000181	SUN3|ENST00000473723.5	-	47987147,47988787,47991009,47994314,47996030,48000127	47987449,47988880,47991045,47994482,47996146,48000181	0.583333
smooth_muscle_cell_derived_from_H9	chr1	235330459	235330460	235330459	+	RAMPAGE_only	6	9	9	0.314625	2.503258	chr1	235330202	235330492	SINE|Alu|AluYf1	+	chr1	235329028	235342559	GGPS1|ENST00000497327.1	+	235329028,235335241,235341707,235342010	235329183,235335334,235341778,235342559	0.888889
smooth_muscle_cell_derived_from_H9	chr6	77369144	77369167	77369166	-	High_confidence	18	29	72	2.517000	5.433542	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77150737	77369151	MSTRG.49937.1	-	77150737,77151818,77271339,77273026,77350621,77368885	77151280,77151974,77271493,77273307,77350734,77369151	0.916667
smooth_muscle_cell_derived_from_H9	chr3	110889198	110889561	110889198	-	RAMPAGE_only	13	21	311	10.872041	5.712541	chr3	110888814	110890548	LINE|L1|L1HS	+	chr3	110888383	110893212	AC117402.1|ENST00000485473.1	-	110888383,110892365,110893137	110888926,110892603,110893212	0.630225
smooth_muscle_cell_derived_from_H9	chr7	603495	603562	603495	+	High_confidence	40	45	274	9.578583	6.152664	chr7	603435	603558	LINE|L2|L2c	+	chr7	603397	608502	LOC101926963|NR_110055.1	+	603397,607864	603616,608502	0.959854
smooth_muscle_cell_derived_from_H9	chr6	118576257	118576300	118576299	+	RAMPAGE_only	4	6	21	0.734125	3.721612	chr6	118576268	118576608	LTR|ERV1|HERVIP10B3-int	+	chr6	118574401	118590900	MSTRG.50840.3	+	118574401,118576250,118582402	118574699,118577306,118590900	0.714286
smooth_muscle_cell_derived_from_H9	chr1	16981093	16981187	16981186	-	High_confidence	157	196	1468	51.318829	5.467502	chr1	16981145	16981282	SINE|Alu|AluJr	-	chr1	16974501	16980835	MFAP2|ENST00000375535.3	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16980586	16975023,16975342,16975730,16976545,16976794,16976923,16977198,16978314,16980835	0.963896
smooth_muscle_cell_derived_from_H9	chr12	108398846	108398857	108398853	+	RAMPAGE_only	36	37	139	4.859208	5.580485	chr12	108398714	108399041	LTR|ERVL|MLT2C1	+	chr12	108415387	108432437	MSTRG.13909.1	+	108415387,108423454,108432244	108415576,108423564,108432437	0.568345
smooth_muscle_cell_derived_from_H9	chr19	55280201	55280251	55280218	-	High_confidence	11	14	61	2.132458	3.119573	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	1.000000
smooth_muscle_cell_derived_from_H9	chr7	99410041	99410057	99410041	+	High_confidence	2	2	8	0.279667	2.521641	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99409084	99419577	MSTRG.54244.5	+	99409084,99410033,99411063,99416137,99417428,99419161	99409245,99410169,99411186,99416260,99417595,99419577	0.875000
smooth_muscle_cell_derived_from_H9	chr10	52955696	52955697	52955696	-	High_confidence	14	15	16	0.559333	3.250000	chr10	52955588	52956110	LTR|ERV1|LTR6A	-	chr10	52946430	52955585	AC073174.2|ENST00000648218.1	-	52946430,52955381	52952970,52955585	0.750000
smooth_muscle_cell_derived_from_H9	chr3	52534908	52534942	52534908	-	High_confidence	3	3	14	0.489417	3.378783	chr3	52534822	52534878	LINE|L2|L2b	-	chr3	52524469	52535006	NT5DC2|ENST00000492555.5	-	52524469,52524816,52524962,52525208,52527293,52527616,52527828,52528012,52528182,52528636,52528860,52529149,52534350	52524731,52524881,52525103,52525295,52527375,52527718,52527931,52528073,52528311,52528692,52528935,52529334,52535006	0.928571
smooth_muscle_cell_derived_from_H9	chr22	39320334	39320346	39320334	-	High_confidence	6	6	14	0.489417	3.182006	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	1.000000
smooth_muscle_cell_derived_from_H9	chr22	50757129	50757248	50757247	+	High_confidence	24	25	109	3.810458	5.332372	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.954128
smooth_muscle_cell_derived_from_H9	chr1	112825764	112825765	112825764	-	RAMPAGE_only	63	64	66	2.307250	3.860485	chr1	112825660	112826054	LTR|ERV1|LTR7	-	chr1	112820169	112849815	LINC01356|ENST00000433505.5	-	112820169,112823652,112825512,112849679	112820538,112823754,112825672,112849815	0.833333
smooth_muscle_cell_derived_from_H9	chr5	150153226	150153227	150153226	+	RAMPAGE_only	9	9	13	0.454458	2.522055	chr5	150153259	150153413	LINE|CR1|L3b	+	chr5	150166780	150184558	CDX1|NM_001804.2	+	150166780,150182767,150183473	150167321,150182913,150184558	0.923077
smooth_muscle_cell_derived_from_H9	chr17	76773178	76773248	76773178	+	High_confidence	3	3	13	0.454458	2.653544	chr17	76772816	76773304	LINE|L1|L1MEc	-	chr17	76773096	76778338	MFSD11|ENST00000590070.1	+	76773096,76774996,76776405,76778187	76773351,76775171,76776541,76778338	0.923077
smooth_muscle_cell_derived_from_H9	chr3	146152367	146152398	146152367	-	RAMPAGE_only	2	2	12	0.419500	3.095795	chr3	146152136	146152431	SINE|Alu|AluSx	+	chr3	146070180	146160992	PLOD2|ENST00000494950.5	-	146070180,146071041,146071276,146072560,146073286,146076781,146077861,146079115,146081737,146085168,146086786,146088585,146091799,146102754,146104278,146106531,146110284,146121111,146124137,146160788	146070872,146071167,146071423,146072665,146073352,146076895,146077924,146079257,146081863,146085273,146086908,146088711,146091901,146102852,146104342,146106644,146110448,146121248,146124229,146160992	0.750000
smooth_muscle_cell_derived_from_H9	chr19	17336685	17336727	17336685	+	High_confidence	33	35	75	2.621875	4.816640	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.920000
smooth_muscle_cell_derived_from_H9	chr5	170267251	170267270	170267251	-	High_confidence	5	5	22	0.769083	3.516028	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.954545
smooth_muscle_cell_derived_from_H9	chr18	39800271	39800305	39800304	-	High_confidence	9	9	35	1.223542	4.477025	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.542857
smooth_muscle_cell_derived_from_H9	chr19	3575628	3575641	3575628	+	RAMPAGE_only	5	6	14	0.489417	3.521641	chr19	3575668	3575971	SINE|Alu|AluSx1	+	chr19	3572978	3579088	HMG20B|ENST00000488973.6	+	3572978,3573691,3575539,3576260,3576552,3576891,3577980,3578508	3573347,3574586,3575660,3576307,3576625,3577107,3578113,3579088	1.000000
smooth_muscle_cell_derived_from_H9	chr16	2757805	2757926	2757805	+	High_confidence	8	8	109	3.810458	4.976011	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2771410	MSTRG.20958.13	+	2757831,2758469,2758984,2759139,2759351,2759568,2760300,2761560,2768996,2770351,2770603,2770857	2757945,2758547,2759047,2759172,2759402,2760008,2760499,2768261,2769284,2770465,2770717,2771410	0.963303
smooth_muscle_cell_derived_from_H9	chr6	112880122	112880162	112880146	+	High_confidence	29	48	216	7.550999	6.254342	chr6	112879825	112880495	LTR|ERV1|MER52C	-	chr6	112880169	112937647	MSTRG.50659.1	+	112880169,112883040,112937593	112880838,112883111,112937647	0.851852
smooth_muscle_cell_derived_from_H9	chr8	143039246	143039285	143039284	+	High_confidence	6	6	25	0.873958	3.882045	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039294	143059942	C8orf31|ENST00000519775.2	+	143039294,143047678,143049208,143059652	143039569,143047814,143049298,143059942	0.720000
smooth_muscle_cell_derived_from_H9	chr5	147946957	147946984	147946957	+	High_confidence	11	11	25	0.873958	3.364889	chr5	147941118	147947133	LINE|L1|L1PA3	-	chr5	147946708	147963922	MSTRG.47599.2	+	147946708,147948791,147963709	147946793,147948905,147963922	0.880000
smooth_muscle_cell_derived_from_H9	chr19	3062922	3062983	3062922	-	High_confidence	29	33	153	5.348625	5.636486	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.993464
smooth_muscle_cell_derived_from_H9	chr7	45940525	45940544	45940532	+	High_confidence	2	2	10	0.349583	2.503258	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45940443	45994183	MSTRG.53275.2	+	45940443,45978349,45979908,45990532,45993782	45940880,45978468,45980027,45991077,45994183	0.900000
smooth_muscle_cell_derived_from_H9	chr9	70194433	70194435	70194434	+	RAMPAGE_only	6	13	15	0.524375	3.106891	chr9	70194264	70194629	LTR|ERVL-MaLR|MLT1A0	+	chr9	70043580	70226970	MAMDC2|ENST00000377182.4	+	70043580,70044583,70108210,70109719,70112994,70126158,70131518,70140144,70143553,70168701,70170478,70218336,70225749,70225967	70044231,70044697,70108482,70109804,70113132,70126415,70131612,70140288,70143819,70168795,70170631,70218596,70225834,70226970	1.000000
smooth_muscle_cell_derived_from_H9	chr8	30729085	30729107	30729106	+	RAMPAGE_only	5	7	14	0.489417	2.950212	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30732246	30766470	UBXN8|ENST00000620074.4	+	30732246,30744327,30751395,30753034,30754664,30756764,30760887,30763272,30766226	30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763347,30766470	0.928571
smooth_muscle_cell_derived_from_H9	chrX	15602157	15602158	15602157	-	High_confidence	15	15	15	0.524375	3.189898	chrX	15602053	15602111	LINE|CR1|L3	-	chrX	15594886	15602148	ACE2|ENST00000484756.1	-	15594886,15600725,15601955	15595003,15601014,15602148	0.933333
smooth_muscle_cell_derived_from_H9	chr5	83096150	83096177	83096152	+	High_confidence	1348	2729	4263	149.027363	7.141445	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83096157	83353711	MSTRG.46263.6	+	83096157,83104909,83111027,83195769,83203551,83204814,83258529,83353124	83096263,83105058,83111203,83195936,83203707,83204921,83258677,83353711	0.948862
smooth_muscle_cell_derived_from_H9	chr2	227805896	227805899	227805896	+	High_confidence	7	7	14	0.489417	3.026987	chr2	227805690	227806180	LTR|ERV1|LTR2C	-	chr2	227806509	227817463	MSTRG.33806.2	+	227806509,227815453,227816306,227817061	227806569,227815568,227816384,227817463	0.857143
smooth_muscle_cell_derived_from_H9	chr21	42925772	42925811	42925778	-	High_confidence	8	8	28	0.978833	4.208966	chr21	42925506	42925876	LTR|ERV1|MER48	-	chr21	42916802	42925646	ERVH48-1|ENST00000447535.1	-	42916802,42925345	42919291,42925646	1.000000
smooth_muscle_cell_derived_from_H9	chr1	168786773	168786784	168786773	+	High_confidence	119	119	187	6.537208	6.331716	chr1	168786791	168787303	LTR|ERVL-MaLR|MLT1L	+	chr1	168786769	168792886	MSTRG.3671.1	+	168786769,168787036,168788780,168792330	168786869,168787228,168788889,168792886	0.882353
smooth_muscle_cell_derived_from_H9	chr3	157533600	157533641	157533600	-	High_confidence	37	38	84	2.936500	5.206023	chr3	157533516	157534378	LINE|L2|L2b	+	chr3	157460214	157533606	VEPH1|ENST00000487753.5	-	157460214,157470313,157495211,157533512	157460355,157470529,157495506,157533606	0.892857
smooth_muscle_cell_derived_from_H9	chr8	32927967	32927977	32927976	+	High_confidence	353	389	955	33.385206	6.888708	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927969	33044855	MSTRG.56394.2	+	32927969,32996200,33041634,33044366	32928093,32996316,33041743,33044855	0.928796
smooth_muscle_cell_derived_from_H9	chr4	13446782	13446812	13446782	-	RAMPAGE_only	2	2	12	0.419500	3.277613	chr4	13444849	13446816	LINE|L1|L1P3	-	chr4	13367723	13484331	RAB28|ENST00000508274.5	-	13367723,13376544,13381490,13474317,13479429,13484075	13368650,13376622,13381594,13474406,13479526,13484331	0.833333
smooth_muscle_cell_derived_from_H9	chr9	22216864	22216869	22216868	-	RAMPAGE_only	31	31	53	1.852792	4.598486	chr9	22216506	22217927	LINE|L1|L1M1	+	chr9	22203989	22214672	AL157937.1|ENST00000435092.1	-	22203989,22213277,22213676,22214464	22204059,22213349,22213769,22214672	0.641509
smooth_muscle_cell_derived_from_H9	chr7	87040212	87040223	87040222	-	High_confidence	46	46	243	8.494874	6.681099	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86919165	87040221	MSTRG.53875.13	-	86919165,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755,87040102	86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87039871,87040221	0.897119
smooth_muscle_cell_derived_from_H9	chr4	187999636	187999659	187999636	+	High_confidence	4	5	17	0.594292	3.405639	chr4	187999613	187999838	LINE|L2|L2b	-	chr4	187999049	188005045	MSTRG.44783.6	+	187999049,187999608,188002712	187999275,187999685,188005045	0.529412
smooth_muscle_cell_derived_from_H9	chr3	179527740	179527821	179527800	-	RAMPAGE_only	6	6	28	0.978833	4.162295	chr3	179527648	179527777	LTR|ERV1|LTR37B	-	chr3	179396088	179451590	GNB4|ENST00000232564.7	-	179396088,179405189,179413411,179413714,179414884,179416492,179419398,179420888,179426143,179451345	179401319,179405406,179413613,179413781,179415047,179416556,179419505,179420927,179426242,179451590	0.535714
smooth_muscle_cell_derived_from_H9	chr1	54413473	54413493	54413473	-	High_confidence	8	8	18	0.629250	3.263933	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54243236	54413479	SSBP3|ENST00000525990.1	-	54243236,54251615,54251793,54257126,54281437,54401860,54404575,54404857,54413355	54243299,54251692,54251860,54257186,54281527,54401945,54404637,54404930,54413479	0.666667
smooth_muscle_cell_derived_from_H9	chr1	1655445	1655478	1655448	-	RAMPAGE_only	4	4	21	0.734125	3.975418	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.523810
smooth_muscle_cell_derived_from_H9	chr7	40815652	40815662	40815652	+	RAMPAGE_only	3	3	11	0.384542	2.921928	chr7	40810256	40816712	LINE|L1|L1PA16	-	chr7	40793364	40881721	MSTRG.53077.10	+	40793364,40860315,40881680	40793501,40860631,40881721	0.727273
smooth_muscle_cell_derived_from_H9	chr9	129575112	129575135	129575134	+	High_confidence	5	5	20	0.699167	3.621928	chr9	129575093	129575303	LTR|ERVL-MaLR|MLT1A0	+	chr9	129575408	129584556	AL391056.1|ENST00000443993.1	+	129575408,129580050,129580478,129582646	129575598,129580319,129580558,129584556	0.600000
smooth_muscle_cell_derived_from_H9	chr12	2798809	2798822	2798809	+	High_confidence	3	3	7	0.244708	2.521641	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.857143
smooth_muscle_cell_derived_from_H9	chr6	114011153	114011200	114011199	-	High_confidence	5	5	21	0.734125	3.384184	chr6	114009574	114011168	LTR|ERV1|MER51-int	-	chr6	113945379	114011308	MSTRG.50718.6	-	113945379,113946007,113948978,113949167,113953276,113956012,113956618,113958648,113959905,113962366,114000000,114009990,114011130	113945470,113946148,113949087,113949260,113953418,113956151,113956693,113958766,113960018,113962394,114000099,114010117,114011308	0.619048
smooth_muscle_cell_derived_from_H9	chr1	245944132	245944148	245944136	-	RAMPAGE_only	611	626	1144	39.992330	6.924550	chr1	245941822	245946127	LINE|L1|L1PA10	+	chr1	245749341	245956102	SMYD3|ENST00000366517.5	-	245749341,245764040,245858495,245863798,245915529,245927930,245929869,245953230,245955832	245749664,245764149,245858670,245863886,245915640,245928033,245929937,245953355,245956102	0.975524
smooth_muscle_cell_derived_from_H9	chr6	150887978	150887981	150887978	+	RAMPAGE_only	2	3	7	0.244708	2.521641	chr6	150888007	150888522	LINE|L1|L1ME3Cz	+	chr6	150866505	150936915	MTHFD1L|ENST00000441122.5	+	150866505,150876089,150877633,150877772,150882761,150885633,150905649,150918576,150922204,150926121,150936803	150866635,150876174,150877684,150877826,150882886,150885734,150905761,150918668,150922302,150926295,150936915	0.571429
smooth_muscle_cell_derived_from_H9	chr9	97697123	97697156	97697155	-	High_confidence	3	3	9	0.314625	3.169925	chr9	97696883	97697140	LINE|L1|L1M4b	-	chr9	97674908	97697293	XPA|ENST00000462523.5	-	97674908,97682199,97684922,97687095,97689533,97693648,97697120	97675587,97682430,97685040,97687261,97689639,97693759,97697293	0.888889
smooth_muscle_cell_derived_from_H9	chr5	90929166	90929171	90929166	+	High_confidence	5	5	11	0.384542	2.663533	chr5	90923630	90929658	LINE|L1|L1PA2	-	chr5	90929526	91072579	ADGRV1|ENST00000639707.1	+	90929526,90965414,90985343,91072446	90929661,90965531,90985522,91072579	0.818182
smooth_muscle_cell_derived_from_H9	chr13	43062220	43062240	43062226	+	RAMPAGE_only	68	76	233	8.145291	5.179198	chr13	43062071	43062490	LTR|ERVL|LTR33	-	chr13	43059514	43113205	MSTRG.14942.3	+	43059514,43065685,43068929,43078611,43085767,43107177	43062295,43065737,43069003,43078688,43085838,43113205	0.982833
smooth_muscle_cell_derived_from_H9	chr18	976669	976791	976686	+	High_confidence	7	7	82	2.866583	4.445569	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976696	1159311	AP005328.1|ENST00000579835.5	+	976696,1061462,1133842,1137813,1159178	976895,1061535,1133894,1137864,1159311	0.634146
smooth_muscle_cell_derived_from_H9	chr11	47234555	47234601	47234555	+	High_confidence	4	4	29	1.013792	3.935399	chr11	47234450	47234560	LINE|L2|L2c	-	chr11	47234580	47236087	DDB2|ENST00000614394.1	+	47234580,47234756,47235269	47234672,47234934,47236087	0.689655
smooth_muscle_cell_derived_from_H9	chr3	31004493	31004532	31004531	-	RAMPAGE_only	3	3	10	0.349583	2.721928	chr3	31004363	31004856	LTR|ERVL-MaLR|MLT1G1	-	chr3	30726199	30894765	GADL1|ENST00000282538.9	-	30726199,30778178,30786354,30800888,30833852,30834216,30838996,30844209,30844386,30849995,30850834,30854698,30857014,30861592,30894577	30728415,30778268,30786406,30801088,30833934,30834281,30839113,30844264,30844466,30850111,30850941,30854789,30857141,30861765,30894765	0.600000
smooth_muscle_cell_derived_from_H9	chr16	65233205	65233252	65233205	-	RAMPAGE_only	65	71	248	8.669666	6.393356	chr16	65232144	65234891	LTR|ERV1|HERVH-int	-	chr16	65199362	65234974	MSTRG.21946.2	-	65199362,65202477,65203898,65233014,65234885	65201820,65202574,65204092,65233302,65234974	0.576613
smooth_muscle_cell_derived_from_H9	chr9	98943483	98943576	98943575	+	High_confidence	60	62	255	8.914374	6.453913	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.980392
smooth_muscle_cell_derived_from_H9	chr7	121511111	121511194	121511111	-	High_confidence	2944	3072	5728	200.241317	8.504928	chr7	121510991	121511453	LTR|ERV1|LTR10B2	-	chr7	121427630	121511209	MSTRG.54851.11	-	121427630,121510775	121486499,121511209	0.820182
smooth_muscle_cell_derived_from_H9	chr7	107580245	107580267	107580264	+	High_confidence	961	973	4766	166.611403	7.037941	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.933907
smooth_muscle_cell_derived_from_H9	chr1	16017942	16017956	16017955	-	High_confidence	14	15	22	0.769083	3.653757	chr1	16017886	16017984	LINE|CR1|L3	+	chr1	16015498	16018005	HSPB7|ENST00000406363.2	-	16015498,16017073,16017764	16015759,16017219,16018005	0.818182
smooth_muscle_cell_derived_from_H9	chr11	122556711	122556712	122556711	-	High_confidence	15	15	15	0.524375	3.589898	chr11	122556640	122557789	LTR|ERV1|LTR12D	+	chr11	122154754	122556721	MIR100HG|ENST00000533109.6	-	122154754,122180335,122292283,122293306,122539478,122553938,122556403	122155632,122180398,122292403,122293606,122539506,122554025,122556721	0.533333
smooth_muscle_cell_derived_from_H9	chr3	17860945	17861017	17861006	+	High_confidence	7	7	53	1.852792	4.726370	chr3	17858274	17861391	LINE|L1|L1HS	-	chr3	17861243	18064084	MSTRG.37685.1	+	17861243,18041448,18063931	17861402,18041541,18064084	0.528302
smooth_muscle_cell_derived_from_H9	chr15	53541006	53541017	53541016	-	High_confidence	6	6	14	0.489417	3.334679	chr15	53540633	53546677	LINE|L1|L1PA2	+	chr15	53513741	53541080	WDR72|ENST00000614174.4	-	53513741,53523217,53540974	53517754,53523322,53541080	0.857143
smooth_muscle_cell_derived_from_H9	chr10	104254381	104254471	104254381	+	High_confidence	78	80	184	6.432333	4.904467	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254193	104267464	GSTO1|NM_001191003.1	+	104254193,104255162,104259575,104262978,104266083,104267251	104254499,104255271,104259798,104263077,104266190,104267464	0.983696
smooth_muscle_cell_derived_from_H9	chr9	117703908	117703911	117703908	+	High_confidence	7	7	13	0.454458	2.584963	chr9	117703727	117704029	LTR|ERVL-MaLR|MLT1B	+	chr9	117704156	117877064	AL160272.2|ENST00000642985.1	+	117704156,117708562,117848064,117870088,117876814	117704565,117708729,117848155,117870484,117877064	0.538462
smooth_muscle_cell_derived_from_H9	chr5	135978351	135978378	135978377	+	RAMPAGE_only	7	7	19	0.664208	3.405822	chr5	135978355	135978596	SINE|MIR|MIRb	+	chr5	136028894	136063818	TGFBI|NM_000358.2	+	136028894,136033762,136044057,136046334,136046850,136047273,136049438,136052906,136053942,136054715,136055679,136056664,136059089,136060833,136061499,136062662,136063185	136029189,136033861,136044122,136046495,136047015,136047420,136049580,136053119,136054080,136054861,136055816,136056795,136059214,136060936,136061579,136062687,136063818	0.894737
smooth_muscle_cell_derived_from_H9	chr11	12076095	12076104	12076095	-	High_confidence	27	39	111	3.880375	4.983031	chr11	12075818	12076276	LTR|ERVL-MaLR|MLT1C	-	chr11	12074824	12076197	MSTRG.8455.1	-	12074824	12076197	0.981982
smooth_muscle_cell_derived_from_H9	chr7	80917465	80917490	80917465	-	High_confidence	8	10	27	0.943875	3.202438	chr7	80917362	80917475	SINE|tRNA|LFSINE_Vert	-	chr7	80827429	80918429	SEMA3C|ENST00000411788.5	-	80827429,80828584,80905828,80916678,80918300	80827487,80828745,80905916,80916819,80918429	0.888889
smooth_muscle_cell_derived_from_H9	chr3	125110569	125110570	125110569	-	RAMPAGE_only	5	5	7	0.244708	2.807355	chr3	125110543	125110700	DNA|hAT-Charlie|MER5A	-	chr3	125082635	125120854	SLC12A8|ENST00000430155.6	-	125082635,125088309,125091438,125092100,125107480,125110188,125118768,125120598	125084052,125088370,125091556,125092198,125108126,125110335,125118856,125120854	1.000000
smooth_muscle_cell_derived_from_H9	chr17	41757421	41757499	41757421	-	RAMPAGE_only	8	8	82	2.866583	5.074911	chr17	41757254	41757383	DNA|hAT-Tip100|MER91B	-	chr17	41754603	41785155	JUP|ENST00000393930.5	-	41754603,41755729,41756174,41757414,41757633,41758398,41758714,41762982,41764712,41764922,41767378,41768968,41769417,41771646,41784946	41755432,41755895,41756214,41757536,41757784,41758518,41758870,41763321,41764816,41765067,41767580,41769207,41769677,41771862,41785155	0.902439
smooth_muscle_cell_derived_from_H9	chr5	147946645	147946683	147946645	+	High_confidence	18	19	74	2.586916	4.805530	chr5	147941118	147947133	LINE|L1|L1PA3	-	chr5	147946708	147963922	MSTRG.47599.2	+	147946708,147948791,147963709	147946793,147948905,147963922	0.581081
smooth_muscle_cell_derived_from_H9	chr12	643627	643648	643635	-	High_confidence	33	33	125	4.369791	4.567229	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.984000
smooth_muscle_cell_derived_from_H9	chr4	182738405	182738455	182738445	+	RAMPAGE_only	11	17	36	1.258500	4.479143	chr4	182738424	182738481	SINE|tRNA|LFSINE_Vert	+	chr4	182680323	182755353	TENM3|ENST00000502950.1	+	182680323,182680542,182681813,182688165,182714086,182728964,182730199,182730877,182736807,182738400,182743169,182744142,182751799,182753449,182754384	182680349,182680737,182682014,182688351,182714233,182729181,182730319,182731139,182737075,182738544,182743419,182744163,182752032,182753604,182755353	0.944444
smooth_muscle_cell_derived_from_H9	chr7	39013163	39013167	39013166	+	High_confidence	6	6	12	0.419500	2.688722	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.833333
smooth_muscle_cell_derived_from_H9	chr6	130894344	130894377	130894344	-	RAMPAGE_only	2	2	9	0.314625	2.500000	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	0.777778
smooth_muscle_cell_derived_from_H9	chr12	79045149	79045203	79045155	+	High_confidence	12	14	66	2.307250	4.831844	chr12	79039621	79045645	LINE|L1|L1PA2	-	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.712121
smooth_muscle_cell_derived_from_H9	chrX	53546435	53546472	53546444	-	RAMPAGE_only	3	3	14	0.489417	2.931209	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.642857
smooth_muscle_cell_derived_from_H9	chr22	32593151	32593160	32593151	-	RAMPAGE_only	3	3	10	0.349583	3.169925	chr22	32593000	32593238	LINE|CR1|L3	-	chr22	32513691	32541716	SYN3|ENST00000332840.9	-	32513691,32518042,32527917,32528873,32533792,32538035,32541570	32513824,32518334,32528005,32529008,32533895,32538110,32541716	0.500000
smooth_muscle_cell_derived_from_H9	chr4	131379753	131379774	131379759	+	High_confidence	11	11	60	2.097500	4.917156	chr4	131379190	131380342	LTR|ERV1|LTR12D	+	chr4	131380012	131528121	LINC02377|ENST00000500169.6	+	131380012,131527229,131528059	131380341,131527288,131528121	0.783333
smooth_muscle_cell_derived_from_H9	chr5	150778326	150778389	150778388	+	High_confidence	13	13	54	1.887750	4.948143	chr5	150778285	150778464	SINE|MIR|MIRb	-	chr5	150778804	150796734	SMIM3|ENST00000648745.1	+	150778804,150782473,150795429	150778972,150782590,150796734	0.648148
smooth_muscle_cell_derived_from_H9	chr19	49675865	49675886	49675865	+	High_confidence	4	4	12	0.419500	3.084963	chr19	49675732	49676004	SINE|Alu|AluY	-	chr19	49675896	49688447	PRMT1|ENST00000532489.5	+	49675896,49676345,49680486,49681909,49682195,49683926,49684753,49684921,49686092,49686604,49688161	49676260,49676439,49680588,49682065,49682259,49684069,49684841,49685037,49686243,49686726,49688447	1.000000
smooth_muscle_cell_derived_from_H9	chr5	147869763	147869838	147869837	+	High_confidence	22	25	60	2.097500	4.643983	chr5	147869835	147870286	LTR|ERV1|LTR7	-	chr5	147870681	147882190	SCGB3A2|ENST00000504320.5	+	147870681,147881445,147882026	147870754,147881648,147882190	0.966667
smooth_muscle_cell_derived_from_H9	chr16	75248150	75248151	75248150	-	High_confidence	12	12	13	0.454458	3.022055	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.769231
smooth_muscle_cell_derived_from_H9	chr5	32505892	32505982	32505921	+	RAMPAGE_only	13	13	49	1.712958	4.803575	chr5	32505649	32506189	LTR|ERVL-MaLR|MLT1K	+	chr5	32531632	32601323	SUB1|ENST00000506237.5	+	32531632,32588511,32591562,32598960,32601004	32531916,32588584,32591685,32599069,32601323	0.795918
smooth_muscle_cell_derived_from_H9	chr3	189308254	189308277	189308254	+	RAMPAGE_only	16	18	55	1.922708	4.386286	chr3	189308185	189308318	SINE|MIR|MIRc	-	chr3	189171973	189323482	TPRG1|NM_198485.3	+	189171973,189207375,189215291,189238732,189310385,189320625	189172131,189207594,189215383,189238909,189310539,189323482	0.509091
smooth_muscle_cell_derived_from_H9	chrX	3406528	3406530	3406528	+	High_confidence	820	1120	1185	41.425622	7.300662	chrX	3406363	3406717	LTR|ERVL-MaLR|MLT1A0	+	chrX	3406519	3479520	MSTRG.61469.1	+	3406519,3407318,3447532,3455890,3460313,3466660,3467650,3478663	3406639,3407393,3447645,3456079,3460468,3466824,3469286,3479520	0.529958
smooth_muscle_cell_derived_from_H9	chr1	246357118	246357134	246357121	-	High_confidence	10	11	35	1.223542	4.049692	chr1	246357091	246357619	LTR|ERV1|MER41A	+	chr1	245863808	246357108	MSTRG.5268.15	-	245863808,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246356419	245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246357108	0.800000
smooth_muscle_cell_derived_from_H9	chr1	153549128	153549134	153549128	-	High_confidence	5	5	14	0.489417	3.039149	chr1	153549066	153549188	SINE|MIR|MIRb	+	chr1	153547512	153549126	S100A3|ENST00000368712.1	-	153547512,153548344,153549027	153547846,153548490,153549126	0.928571
smooth_muscle_cell_derived_from_H9	chr5	147946719	147946751	147946719	+	High_confidence	6	6	28	0.978833	3.440760	chr5	147941118	147947133	LINE|L1|L1PA3	-	chr5	147946708	147963922	MSTRG.47599.2	+	147946708,147948791,147963709	147946793,147948905,147963922	0.785714
smooth_muscle_cell_derived_from_H9	chr16	65232012	65232052	65232051	+	High_confidence	266	269	822	28.735748	6.835799	chr16	65232015	65232173	LTR|ERV1|HERVH-int	-	chr16	65232062	65393675	MSTRG.21951.2	+	65232062,65371096,65392993	65233403,65371185,65393675	0.980535
smooth_muscle_cell_derived_from_H9	chr18	48621516	48621540	48621524	+	RAMPAGE_only	7	7	24	0.839000	3.823068	chr18	48621468	48621857	LINE|L2|L2a	-	chr18	48539987	48711695	CTIF|ENST00000587752.5	+	48539987,48619537,48636613,48663751,48664446,48670668,48711618	48540058,48619745,48636685,48663825,48664551,48670744,48711695	0.541667
smooth_muscle_cell_derived_from_H9	chr12	69778949	69778976	69778949	+	High_confidence	6	6	18	0.629250	3.725481	chr12	69773410	69779441	LINE|L1|L1HS	-	chr12	69778949	69817181	RAB3IP|ENST00000551641.5	+	69778949,69784719,69794436,69795140,69800208,69801608,69812777,69812963,69815363	69779181,69784815,69794514,69795344,69800337,69801721,69812877,69813033,69817181	0.833333
smooth_muscle_cell_derived_from_H9	chr12	8788252	8788253	8788252	+	High_confidence	391	404	464	16.220665	6.214525	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.915948
smooth_muscle_cell_derived_from_H9	chr18	659659	659714	659713	+	RAMPAGE_only	17	17	63	2.202375	4.047285	chr18	659744	659794	LINE|L2|L2a	+	chr18	657742	673484	TYMS|ENST00000323224.7	+	657742,659640,662145,670691,671379,672859	657947,659714,662320,670867,671451,673484	0.968254
smooth_muscle_cell_derived_from_H9	chrX	53220856	53220900	53220856	-	RAMPAGE_only	5	6	19	0.664208	3.572431	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	0.947368
smooth_muscle_cell_derived_from_H9	chr4	184537566	184537596	184537566	-	High_confidence	8	9	49	1.712958	3.957285	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.857143
smooth_muscle_cell_derived_from_H9	chr10	131777401	131777402	131777401	-	RAMPAGE_only	8	11	11	0.384542	2.732159	chr10	131777280	131777532	LTR|ERV1|LTR10B2	-	chr10	131772397	131790199	LINC01164|NR_038365.1	-	131772397,131773856,131774883,131789656,131790076	131773687,131774205,131776295,131789866,131790199	1.000000
smooth_muscle_cell_derived_from_H9	chr4	152412488	152412498	152412488	-	High_confidence	8	8	16	0.559333	2.606239	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.937500
smooth_muscle_cell_derived_from_H9	chr5	150639525	150639526	150639525	+	High_confidence	14	15	17	0.594292	3.734522	chr5	150639529	150639745	SINE|MIR|MIRb	+	chr5	150640320	150656751	MSTRG.47710.8	+	150640320,150647943,150656403	150640425,150650303,150656751	0.823529
smooth_muscle_cell_derived_from_H9	chr21	33931404	33931497	33931496	+	High_confidence	7	7	31	1.083708	3.953566	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931213	33971186	LINC00649|ENST00000400353.6	+	33931213,33945809,33969236	33931267,33945895,33971186	0.741935
smooth_muscle_cell_derived_from_H9	chr12	105332519	105332545	105332522	+	RAMPAGE_only	3	3	16	0.559333	3.750000	chr12	105332447	105332765	SINE|Alu|AluSq2	+	chr12	105330867	105370680	C12orf75|ENST00000549934.2	+	105330867,105348601,105365806,105366616,105367476,105370633	105330937,105348626,105365842,105366696,105367509,105370680	0.812500
smooth_muscle_cell_derived_from_H9	chr7	37492580	37492581	37492580	+	High_confidence	501	502	540	18.877498	5.877253	chr7	37491930	37492896	LTR|ERV1|LTR12D	+	chr7	37492569	37530728	MSTRG.52986.1	+	37492569,37530572	37493041,37530728	0.888889
smooth_muscle_cell_derived_from_H9	chr12	91179462	91179549	91179462	-	High_confidence	1413	1485	5775	201.884359	7.323917	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.935411
smooth_muscle_cell_derived_from_H9	chr22	24011756	24011757	24011756	+	High_confidence	10	10	10	0.349583	2.846439	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
smooth_muscle_cell_derived_from_H9	chr4	99021705	99021710	99021709	-	High_confidence	8	12	25	0.873958	3.970176	chr4	99021524	99021908	LTR|ERV1|LTR10C	-	chr4	99013419	99021645	MSTRG.43179.3	-	99013419,99017293,99021303	99016142,99020149,99021645	0.960000
smooth_muscle_cell_derived_from_H9	chr11	111097312	111097338	111097312	-	High_confidence	17	17	67	2.342208	4.199303	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	1.000000
smooth_muscle_cell_derived_from_H9	chr17	50271485	50271488	50271485	+	High_confidence	88	88	144	5.034000	4.837537	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
smooth_muscle_cell_derived_from_H9	chr13	111337451	111337478	111337451	+	High_confidence	117	142	330	11.536249	5.855390	chr13	111337198	111337649	LTR|ERVL-MaLR|MLT1F	-	chr13	111337461	111344149	MSTRG.15795.3	+	111337461,111339862,111342755,111344082	111337671,111339932,111342931,111344149	0.633333
smooth_muscle_cell_derived_from_H9	chr18	7946875	7946898	7946878	+	High_confidence	105	107	341	11.920791	5.636114	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.876833
smooth_muscle_cell_derived_from_H9	chrX	19349952	19350000	19349999	+	RAMPAGE_only	4	4	23	0.804042	3.744239	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19352828	19355445	PDHA1|ENST00000479146.1	+	19352828,19354490,19355348	19353173,19354583,19355445	0.521739
smooth_muscle_cell_derived_from_H9	chr6	55040418	55040451	55040418	+	RAMPAGE_only	16	17	50	1.747917	4.441341	chr6	55040323	55040477	LTR|ERV1|MER110	+	chr6	55106459	55282592	HCRTR2|ENST00000615358.4	+	55106459,55174210,55248638,55255135,55263706,55277379,55280322,55282224	55106545,55174810,55248817,55255379,55263822,55277600,55280444,55282592	0.680000
smooth_muscle_cell_derived_from_H9	chr11	65434148	65434328	65434316	+	RAMPAGE_only	25	25	129	4.509625	5.553836	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
smooth_muscle_cell_derived_from_H9	chr18	46087060	46087119	46087060	-	High_confidence	5	5	31	1.083708	4.323231	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.516129
smooth_muscle_cell_derived_from_H9	chr3	110835237	110835677	110835341	-	RAMPAGE_only	15	18	288	10.067999	5.899924	chr3	110830864	110836421	LINE|L1|L1PA7	-	chr3	110819784	110893476	MSTRG.39434.5	-	110819784,110889425,110893137	110889209,110892603,110893476	1.000000
smooth_muscle_cell_derived_from_H9	chr7	102973265	102973272	102973271	-	High_confidence	9	9	24	0.839000	3.855389	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102883571	102973219	FBXL13|ENST00000477915.5	-	102883571,102884213,102913085,102926273,102963532,102968021,102973149	102883685,102884312,102913215,102926374,102963665,102968117,102973219	0.500000
smooth_muscle_cell_derived_from_H9	chr5	82309407	82309408	82309407	+	High_confidence	58	58	60	2.097500	4.808087	chr5	82309227	82309578	LTR|ERVL|LTR40A1	+	chr5	82309426	82318380	MSTRG.46199.5	+	82309426,82310156,82312610,82317997	82309527,82310207,82312851,82318380	0.883333
smooth_muscle_cell_derived_from_H9	chr14	51728863	51729178	51729154	+	RAMPAGE_only	24	24	275	9.613541	5.968263	chr14	51729121	51729296	DNA|hAT-Charlie|MER5B	+	chr14	51717282	51730727	FRMD6|NM_001267047.1	+	51717282,51720054,51721948,51725778,51727744	51717348,51720390,51722080,51725870,51730727	1.000000
smooth_muscle_cell_derived_from_H9	chr18	54973173	54973178	54973177	-	RAMPAGE_only	4	5	11	0.384542	2.913977	chr18	54972709	54974175	LINE|L2|L2a	+	chr18	54901508	54959508	CCDC68|ENST00000591504.5	-	54901508,54907785,54917912,54919270,54928799,54934819,54936832,54937956,54940996,54942674,54945387,54959335	54904415,54907862,54917996,54919376,54928882,54934948,54936958,54938097,54941083,54942803,54945477,54959508	1.000000
smooth_muscle_cell_derived_from_H9	chr15	49876814	49876866	49876814	-	High_confidence	5	6	20	0.699167	3.608695	chr15	49876657	49876846	SINE|MIR|MIRb	-	chr15	49858237	49876695	ATP8B4|ENST00000558498.5	-	49858237,49862244,49866345,49876277,49876642	49860475,49862375,49866484,49876523,49876695	0.850000
smooth_muscle_cell_derived_from_H9	chr18	31093564	31093610	31093564	-	RAMPAGE_only	5	6	34	1.188583	3.804229	chr18	31093142	31093519	LINE|L1|L1PA10	-	chr18	31061384	31091583	MSTRG.25948.2	-	31061384,31068893,31070725,31071604,31074682,31079846,31080095,31082237,31082925,31087668,31089438,31091027	31068344,31069151,31070850,31071841,31074907,31079989,31080352,31082423,31086742,31087813,31089594,31091583	0.941176
smooth_muscle_cell_derived_from_H9	chr8	11911620	11911664	11911660	-	RAMPAGE_only	7	7	24	0.839000	3.675311	chr8	11907116	11911625	LTR|ERV1|HERVE-int	-	chr8	11852609	11869448	CTSB|ENST00000534382.5	-	11852609,11853328,11868921	11852695,11853479,11869448	0.625000
smooth_muscle_cell_derived_from_H9	chr1	245860512	245860594	245860512	-	RAMPAGE_only	17	19	67	2.342208	5.099688	chr1	245860451	245860544	DNA|hAT-Tip100|UCON132b	-	chr1	245749350	245858647	SMYD3|ENST00000483072.5	-	245749350,245858495	245749664,245858647	0.835821
smooth_muscle_cell_derived_from_H9	chr2	111480260	111480263	111480260	-	RAMPAGE_only	829	980	1549	54.150454	6.566302	chr2	111480041	111480456	LTR|ERVL-MaLR|MLT1C	-	chr2	111202592	111481822	MSTRG.31100.6	-	111202592,111206124,111208755,111344060,111365560,111479906	111204219,111208661,111208936,111344237,111367575,111481822	0.510652
smooth_muscle_cell_derived_from_H9	chr2	188496938	188496939	188496938	+	RAMPAGE_only	4	5	7	0.244708	2.521641	chr2	188496694	188497091	LTR|ERVL-MaLR|MSTA	+	chr2	188522737	188584309	GULP1|ENST00000476422.5	+	188522737,188529096,188541180,188569238,188570027,188584264	188522827,188529195,188541318,188569355,188570120,188584309	0.571429
smooth_muscle_cell_derived_from_H9	chr12	8681557	8681603	8681599	+	High_confidence	13	14	33	1.153625	4.354852	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.696970
smooth_muscle_cell_derived_from_H9	chrX	16712879	16712959	16712889	-	High_confidence	26	28	141	4.929125	5.781204	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.950355
smooth_muscle_cell_derived_from_H9	chr19	48637367	48637379	48637367	-	High_confidence	5	5	14	0.489417	3.546594	chr19	48637310	48637367	LINE|L1|X9_LINE	+	chr19	48633085	48637363	DBP|ENST00000601104.1	-	48633085,48635579,48636855	48633655,48635990,48637363	0.928571
smooth_muscle_cell_derived_from_H9	chr5	117454948	117454953	117454948	+	High_confidence	6	12	23	0.804042	4.055958	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.869565
smooth_muscle_cell_derived_from_H9	chr15	82094031	82094067	82094031	+	RAMPAGE_only	23	23	65	2.272291	4.900924	chr15	82093781	82094459	DNA|TcMar-Tigger|Tigger7	+	chr15	82088593	82097694	LINC01583|NR_120367.1	+	82088593,82091726,82093393,82093982,82095481,82097447	82088728,82092604,82093494,82094234,82096436,82097694	0.800000
smooth_muscle_cell_derived_from_H9	chr8	9249411	9249412	9249411	+	RAMPAGE_only	5	5	7	0.244708	2.521641	chr8	9249335	9249524	LTR|ERV1|LTR2C	+	chr8	9326094	9425524	AC022784.1|ENST00000650282.1	+	9326094,9361365,9363261,9425115	9326303,9361423,9363382,9425524	0.571429
smooth_muscle_cell_derived_from_H9	chr9	27009107	27009158	27009157	+	RAMPAGE_only	5	5	19	0.664208	3.326360	chr9	27009197	27009327	DNA|hAT-Charlie|MER5A1	+	chr9	26956478	27036800	IFT74|ENST00000429045.6	+	26956478,26961948,26978127,26980570,26984256,26984498,26988668,26990133,27009019,27011905,27016906,27018646,27029024,27036449	26956516,26962087,26978263,26980619,26984355,26984559,26988728,26990195,27009158,27011968,27017050,27018687,27029104,27036800	0.684211
smooth_muscle_cell_derived_from_H9	chr12	108330047	108330048	108330047	-	RAMPAGE_only	4	4	7	0.244708	2.521641	chr12	108329939	108330453	LTR|ERVL-MaLR|MLT1H	+	chr12	108291569	108339313	CMKLR1|ENST00000552995.5	-	108291569,108329994,108339026	108292959,108330207,108339313	1.000000
smooth_muscle_cell_derived_from_H9	chr3	39154563	39154614	39154565	-	High_confidence	123	170	377	13.179291	4.840679	chr3	39154504	39154649	LINE|L2|L2c	+	chr3	39142337	39154562	CSRNP1|ENST00000514182.1	-	39142337,39144136,39144996,39146477,39154496	39144044,39144451,39145256,39146722,39154562	0.960212
smooth_muscle_cell_derived_from_H9	chr2	185425154	185425179	185425154	+	High_confidence	2	2	7	0.244708	2.807355	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185425113	185766549	MSTRG.32633.1	+	185425113,185434096,185483033,185739345,185743132,185744321,185745428,185746668,185747312,185753721,185760987,185761971,185763182,185764501	185425507,185434191,185483091,185739471,185743294,185744411,185745568,185746810,185747423,185753848,185761103,185762017,185763289,185766549	0.571429
smooth_muscle_cell_derived_from_H9	chr21	44485691	44485718	44485703	+	High_confidence	2	2	8	0.279667	2.750000	chr21	44485339	44486157	LTR|ERV1|LTR1A2	+	chr21	44485576	44490288	LINC02575|ENST00000449713.1	+	44485576,44490030	44486230,44490288	0.875000
smooth_muscle_cell_derived_from_H9	chr18	42048506	42048507	42048506	+	RAMPAGE_only	13	13	15	0.524375	2.606239	chr18	42048457	42048594	SINE|MIR|MIRb	+	chr18	42057834	42081421	PIK3C3|ENST00000588156.5	+	42057834,42064739,42067387,42081122	42058051,42064830,42067513,42081421	1.000000
smooth_muscle_cell_derived_from_H9	chr12	31121336	31121338	31121336	-	RAMPAGE_only	6	14	15	0.524375	2.692381	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.933333
smooth_muscle_cell_derived_from_H9	chr11	65434472	65434480	65434479	+	RAMPAGE_only	2	4	9	0.314625	2.500000	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.888889
smooth_muscle_cell_derived_from_H9	chr13	30429288	30429289	30429288	-	RAMPAGE_only	8	10	10	0.349583	2.641604	chr13	30428989	30429302	SINE|Alu|AluSq2	+	chr13	30202629	30307487	KATNAL1|NM_032116.4	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30307330	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307487	0.900000
smooth_muscle_cell_derived_from_H9	chr5	150153268	150153273	150153268	+	RAMPAGE_only	11	11	21	0.734125	3.499228	chr5	150153259	150153413	LINE|CR1|L3b	+	chr5	150166780	150184558	CDX1|NM_001804.2	+	150166780,150182767,150183473	150167321,150182913,150184558	0.952381
smooth_muscle_cell_derived_from_H9	chr16	4355592	4355593	4355592	-	High_confidence	173	178	178	6.222583	4.982040	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.932584
smooth_muscle_cell_derived_from_H9	chr7	92244927	92244949	92244948	-	High_confidence	3	5	9	0.314625	2.725481	chr7	92244870	92245026	DNA|hAT-Charlie|MER20B	+	chr7	92240848	92244149	KRIT1|ENST00000470309.5	-	92240848,92242033,92244001	92241152,92242161,92244149	0.666667
smooth_muscle_cell_derived_from_H9	chr7	103353924	103353931	103353924	+	High_confidence	6	6	13	0.454458	2.855389	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.769231
smooth_muscle_cell_derived_from_H9	chr6	2881285	2881286	2881285	-	High_confidence	34	36	36	1.258500	4.076741	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.944444
smooth_muscle_cell_derived_from_H9	chr5	172958872	172958922	172958918	+	High_confidence	49	55	193	6.746958	4.727478	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.963731
smooth_muscle_cell_derived_from_H9	chr11	27220078	27220089	27220078	-	High_confidence	6	6	22	0.769083	3.788755	chr11	27219703	27225730	LINE|L1|L1PA2	+	chr11	27063019	27220086	BBOX1-AS1|ENST00000530430.1	-	27063019,27066491,27151049,27217316,27219686	27063060,27066662,27151152,27217480,27220086	0.636364
smooth_muscle_cell_derived_from_H9	chr17	35432451	35432500	35432475	-	High_confidence	9	12	35	1.223542	4.457575	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	1.000000
smooth_muscle_cell_derived_from_H9	chr2	188900897	188900901	188900900	-	RAMPAGE_only	5	7	14	0.489417	2.950212	chr2	188900680	188901002	LINE|L2|L2a	+	chr2	188733737	188790104	DIRC1|NM_052952.2	-	188733737,188789862	188734949,188790104	0.571429
smooth_muscle_cell_derived_from_H9	chr7	87039827	87039841	87039827	-	High_confidence	4	4	10	0.349583	2.646439	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86919165	87040221	MSTRG.53875.13	-	86919165,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755,87040102	86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87039871,87040221	0.900000
smooth_muscle_cell_derived_from_H9	chr2	28165286	28165293	28165292	+	RAMPAGE_only	4	5	10	0.349583	2.721928	chr2	28165020	28165437	LINE|L2|L2b	-	chr2	27890792	28338901	BABAM2|ENST00000361704.6	+	27890792,27894532,27929831,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28310081,28338449	27890842,27894684,27929908,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28310153,28338901	1.000000
smooth_muscle_cell_derived_from_H9	chr5	159180051	159180093	159180063	-	High_confidence	7	7	30	1.048750	4.081728	chr5	159179710	159180477	LTR|ERV1|LTR78	-	chr5	159157410	159180853	MSTRG.47833.4	-	159157410,159161265,159162931,159168872,159169678,159173982	159159035,159161622,159163079,159169055,159169819,159180853	1.000000
smooth_muscle_cell_derived_from_H9	chr14	44240126	44240162	44240155	-	High_confidence	143	160	520	18.178332	5.245243	chr14	44239879	44240579	LINE|L1|L1MC1	+	chr14	44239480	44239933	MSTRG.16849.1	-	44239480	44239933	0.986538
smooth_muscle_cell_derived_from_H9	chr13	52661560	52661561	52661560	+	RAMPAGE_only	10	10	12	0.419500	2.751629	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
smooth_muscle_cell_derived_from_H9	chr1	32221748	32221771	32221748	+	High_confidence	4	4	8	0.279667	2.500000	chr1	32221596	32221823	SINE|MIR|MIRb	-	chr1	32221583	32231604	EIF3I|NM_003757.3	+	32221583,32222357,32222537,32224033,32224409,32226170,32226402,32228498,32228726,32229134,32230926,32231114	32222032,32222444,32222630,32224121,32224475,32226320,32226530,32228609,32228816,32229208,32231019,32231604	0.875000
smooth_muscle_cell_derived_from_H9	chr5	81616579	81616580	81616579	-	High_confidence	9	11	14	0.489417	3.392747	chr5	81616090	81622140	LINE|L1|L1HS	+	chr5	81419917	81616625	MSTRG.46182.4	-	81419917,81428584,81437429,81440557,81442652,81446867,81448789,81461054,81466973,81473699,81474495,81489249,81513627,81615472,81616348	81420533,81428683,81437458,81440636,81442723,81446922,81448825,81461103,81467041,81473770,81474562,81489309,81513717,81615557,81616625	0.642857
smooth_muscle_cell_derived_from_H9	chr18	58359853	58359872	58359871	+	RAMPAGE_only	10	14	48	1.678000	4.724543	chr18	58359696	58359878	DNA|hAT-Charlie|MER5A	+	chr18	58323319	58396333	NEDD4L|ENST00000587881.1	+	58323319,58324995,58328994,58330737,58333817,58349536,58350990,58357193,58364267,58365998,58367745,58370396,58373173,58383245,58385525,58387438,58389084,58390645,58391486,58396166	58323334,58325162,58329127,58330914,58333892,58349614,58351045,58357252,58364333,58366228,58367867,58370467,58373269,58383319,58385586,58387498,58389192,58390742,58391559,58396333	0.687500
smooth_muscle_cell_derived_from_H9	chr1	1655372	1655422	1655421	-	RAMPAGE_only	5	5	18	0.629250	3.419382	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.555556
smooth_muscle_cell_derived_from_H9	chr19	35115816	35115845	35115816	+	High_confidence	11	11	37	1.293458	4.593429	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.918919
smooth_muscle_cell_derived_from_H9	chr5	31530900	31530912	31530900	-	RAMPAGE_only	6	6	12	0.419500	2.663533	chr5	31530667	31530954	LINE|L2|L2c	+	chr5	31400496	31532061	DROSHA|ENST00000511367.6	-	31400496,31405676,31406852,31409055,31409249,31410745,31421271,31422786,31424426,31429474,31431575,31435764,31437238,31448546,31449280,31451532,31464235,31466181,31467938,31472062,31483553,31484880,31486490,31493206,31495285,31504554,31508620,31511034,31514987,31515453,31521122,31526078,31529039,31530797,31531989	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31422944,31424471,31429545,31431678,31435864,31437298,31448607,31449419,31451640,31464343,31466281,31468063,31472232,31483628,31484962,31486562,31493293,31495372,31504635,31508775,31511176,31515219,31515564,31521215,31526912,31529105,31530924,31532061	0.916667
smooth_muscle_cell_derived_from_H9	chr9	22113612	22113613	22113612	+	High_confidence	39	48	52	1.817833	4.257936	chr9	22113591	22113733	SINE|MIR|MIRc	+	chr9	22113677	22121097	CDKN2B-AS1|ENST00000422420.1	+	22113677,22120199,22120503	22113799,22120410,22121097	0.903846
smooth_muscle_cell_derived_from_H9	chr21	33931121	33931225	33931154	+	High_confidence	9	10	61	2.132458	4.456061	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.852459
smooth_muscle_cell_derived_from_H9	chr7	137268141	137268178	137268177	-	High_confidence	15	17	51	1.782875	4.657240	chr7	137267941	137268351	LTR|ERV1|HERVE_a-int	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.980392
smooth_muscle_cell_derived_from_H9	chr12	77382392	77382416	77382415	+	RAMPAGE_only	12	12	33	1.153625	3.544098	chr12	77382299	77382511	DNA|hAT-Charlie|MER20	-	chr12	77324901	77783651	MSTRG.13335.3	+	77324901,77571858,77783262	77325214,77572266,77783651	0.848485
smooth_muscle_cell_derived_from_H9	chr4	75127183	75127207	75127183	-	RAMPAGE_only	10	10	33	1.153625	3.857689	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.939394
smooth_muscle_cell_derived_from_H9	chr5	95717623	95717666	95717623	+	High_confidence	9	9	54	1.887750	3.126052	chr5	95717605	95717747	LTR|ERVL|LTR33	-	chr5	95717632	95756093	RHOBTB3|ENST00000504949.1	+	95717632,95731858,95736888,95748332,95752238,95755395	95717765,95732084,95737075,95748487,95752350,95756093	0.944444
smooth_muscle_cell_derived_from_H9	chr11	76621815	76621845	76621815	-	RAMPAGE_only	10	10	52	1.817833	4.399997	chr11	76621682	76621865	SINE|MIR|MIRb	+	chr11	76607852	76630427	AP001189.5|ENST00000637683.1	-	76607852,76626572,76627738,76628403,76630194	76608238,76627225,76627801,76628481,76630427	0.826923
smooth_muscle_cell_derived_from_H9	chr7	27827788	27827813	27827812	+	RAMPAGE_only	9	9	29	1.013792	3.228287	chr7	27827862	27827982	DNA|hAT-Charlie|MER5A	+	chr7	27793137	27829022	TAX1BP1|ENST00000457186.2	+	27793137,27794322,27796115,27799964,27803108,27816348,27816889,27827737,27828627	27793212,27794446,27796219,27800090,27803180,27816394,27817038,27827820,27829022	0.827586
smooth_muscle_cell_derived_from_H9	chr21	44485430	44485486	44485485	+	High_confidence	8	9	56	1.957667	4.635056	chr21	44485339	44486157	LTR|ERV1|LTR1A2	+	chr21	44485576	44490288	LINC02575|ENST00000449713.1	+	44485576,44490030	44486230,44490288	0.910714
smooth_muscle_cell_derived_from_H9	chr7	45940637	45940690	45940689	+	High_confidence	17	19	86	3.006416	4.430411	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45940443	45999322	MSTRG.53275.3	+	45940443,45977576,45978349,45979908,45990532,45994289,45998843	45940880,45977678,45978468,45980027,45991077,45994392,45999322	0.848837
smooth_muscle_cell_derived_from_H9	chr9	127451050	127451128	127451127	-	High_confidence	4	4	21	0.734125	3.535175	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	1.000000
smooth_muscle_cell_derived_from_H9	chr16	30097080	30097084	30097080	+	High_confidence	2511	2519	4331	151.404530	7.116067	chr16	30096875	30097207	LTR|ERV1|LTR10B2	+	chr16	30096429	30105456	LOC101928595|NR_135192.1	+	30096429,30103456	30097419,30105456	0.962826
smooth_muscle_cell_derived_from_H9	chr2	171433377	171433378	171433377	-	High_confidence	4	4	7	0.244708	2.584963	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.857143
smooth_muscle_cell_derived_from_H9	chr8	51359018	51359030	51359029	-	RAMPAGE_only	26	31	66	2.307250	5.445761	chr8	51358978	51359072	LINE|L1|L1MEj	+	chr8	51319578	51408979	PXDNL|ENST00000522933.5	-	51319578,51320783,51339623,51345832,51371872,51408066	51320022,51320897,51339753,51345947,51372081,51408979	0.939394
smooth_muscle_cell_derived_from_H9	chr7	137268205	137268271	137268265	-	High_confidence	34	34	78	2.726750	4.956625	chr7	137267941	137268351	LTR|ERV1|HERVE_a-int	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.948718
smooth_muscle_cell_derived_from_H9	chr1	112850264	112850313	112850278	+	High_confidence	4	5	15	0.524375	3.189898	chr1	112850184	112850373	SINE|MIR|MIR	+	chr1	112850075	112877867	AL390729.1|ENST00000422022.1	+	112850075,112877729	112850427,112877867	0.933333
smooth_muscle_cell_derived_from_H9	chrX	24077161	24077342	24077297	+	RAMPAGE_only	10	10	130	4.544583	4.580345	chrX	24077071	24077365	SINE|Alu|AluSx	-	chrX	24054970	24078821	MSTRG.61773.3	+	24054970,24055614,24057420,24057632,24060087,24062415,24064200,24065997,24067963,24071557,24073090,24076721	24055042,24055678,24057548,24057754,24060182,24062574,24064335,24066092,24068108,24071727,24073263,24078821	0.984615
smooth_muscle_cell_derived_from_H9	chr6	118574087	118574118	118574096	-	High_confidence	104	127	650	22.722915	7.383367	chr6	118574043	118574503	LTR|ERV1|LTR10B2	+	chr6	118565558	118574068	CEP85L|ENST00000472713.1	-	118565558,118573990	118566316,118574068	0.649231
smooth_muscle_cell_derived_from_H9	chr9	129698737	129698760	129698743	+	High_confidence	221	241	1013	35.412789	5.655184	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129698741	129722674	MSTRG.61103.2	+	129698741,129719230,129720595,129722216	129698809,129719418,129720774,129722674	0.951629
smooth_muscle_cell_derived_from_H9	chr12	95003214	95003278	95003259	-	High_confidence	11	12	49	1.712958	3.894696	chr12	95003195	95003316	SINE|MIR|MIR3	-	chr12	94971332	95003608	NDUFA12|ENST00000551991.5	-	94971332,94994169,94996903,95002738,95003594	94971620,94994257,94996976,95002821,95003608	1.000000
smooth_muscle_cell_derived_from_H9	chr21	38235508	38235519	38235513	+	High_confidence	50	53	100	3.495833	5.413158	chr21	38235271	38235576	SINE|Alu|AluSx	+	chr21	38235506	38301490	MSTRG.35905.16	+	38235506,38296925,38299243	38235670,38297023,38301490	0.670000
smooth_muscle_cell_derived_from_H9	chr8	83911321	83911336	83911321	+	RAMPAGE_only	3	3	9	0.314625	2.725481	chr8	83911201	83911697	LTR|ERV1|LOR1-int	+	chr8	83912682	83980150	MSTRG.57097.3	+	83912682,83967327,83978571,83979924	83912835,83976926,83978766,83980150	0.777778
smooth_muscle_cell_derived_from_H9	chr1	28681084	28681085	28681084	+	RAMPAGE_only	8	8	8	0.279667	2.500000	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	0.875000
smooth_muscle_cell_derived_from_H9	chrX	8122395	8122396	8122395	+	High_confidence	384	387	403	14.088207	6.405121	chrX	8121415	8122700	LTR|ERV1|LTR12C	+	chrX	8122403	8229310	MSTRG.61503.2	+	8122403,8228334	8122723,8229310	0.684864
smooth_muscle_cell_derived_from_H9	chr11	67620234	67620248	67620247	+	High_confidence	7	8	18	0.629250	3.419382	chr11	67618852	67620425	LTR|ERV1|LTR12C	+	chr11	67619993	67627473	MSTRG.9564.1	+	67619993,67626053	67620536,67627473	0.944444
smooth_muscle_cell_derived_from_H9	chr13	30743872	30743918	30743872	+	RAMPAGE_only	5	6	18	0.629250	3.499228	chr13	30743467	30743894	LINE|L2|L2c	+	chr13	30735507	30764426	ALOX5AP|ENST00000380490.4	+	30735507,30744059,30752051,30755943,30763943	30735675,30744159,30752122,30756025,30764426	0.777778
smooth_muscle_cell_derived_from_H9	chr4	110410956	110411071	110410956	+	RAMPAGE_only	17	18	132	4.614500	5.513007	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110365732	110506258	ENPEP|ENST00000510961.1	+	110365732,110488540,110491032,110500028,110506182	110365804,110488682,110491164,110500163,110506258	0.553030
smooth_muscle_cell_derived_from_H9	chr15	74174548	74174572	74174571	+	High_confidence	244	289	850	29.714581	5.500146	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	0.985882
smooth_muscle_cell_derived_from_H9	chr9	120471752	120471794	120471772	-	RAMPAGE_only	6	6	16	0.559333	2.905639	chr9	120471770	120471851	LINE|L2|L2	+	chr9	120389195	120517760	MSTRG.60829.5	-	120389195,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120460571,120467859,120470110,120471747,120477349,120487293,120491306,120517756	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120460667,120467997,120470220,120471878,120477450,120487437,120491477,120517760	0.687500
smooth_muscle_cell_derived_from_H9	chr3	24297736	24297737	24297736	-	RAMPAGE_only	8	8	12	0.419500	2.751629	chr3	24297734	24297875	DNA|hAT-Charlie|MER5B	+	chr3	24119042	24486595	THRB|ENST00000646432.1	-	24119042,24127498,24133315,24143500,24146674,24152389,24190073,24228937,24337299,24483922,24486399	24123125,24127757,24133462,24143706,24146822,24152490,24190334,24229001,24337371,24484095,24486595	0.833333
smooth_muscle_cell_derived_from_H9	chr15	98890315	98890351	98890317	+	High_confidence	18	25	39	1.363375	4.394251	chr15	98890160	98890677	LTR|ERV1|MER41A	+	chr15	98890541	98896886	IGF1R|ENST00000560432.1	+	98890541,98891324,98896756	98890755,98891637,98896886	0.717949
smooth_muscle_cell_derived_from_H9	chr22	42115542	42115543	42115542	-	High_confidence	989	1040	1359	47.508371	7.611172	chr22	42115425	42115918	LTR|ERV1|LTR10G	-	chr22	42104713	42115618	MSTRG.37050.1	-	42104713,42115207	42108021,42115618	0.650478
smooth_muscle_cell_derived_from_H9	chr2	232845848	232845870	232845848	+	RAMPAGE_only	4	4	11	0.384542	2.913977	chr2	232845876	232846546	LINE|CR1|L3	+	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	1.000000
smooth_muscle_cell_derived_from_H9	chr1	151166642	151166686	151166642	+	High_confidence	9	12	55	1.922708	4.629075	chr1	151166599	151166732	SINE|Alu|FLAM_A	-	chr1	151166668	151169111	SCNM1|ENST00000497147.1	+	151166668,151167120,151167325,151168143,151168985	151167022,151167218,151167414,151168338,151169111	0.963636
smooth_muscle_cell_derived_from_H9	chr17	59619874	59619929	59619894	+	High_confidence	639	822	3294	115.152741	5.672657	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.943837
smooth_muscle_cell_derived_from_H9	chr3	17860881	17860902	17860881	+	High_confidence	4	4	14	0.489417	3.378783	chr3	17858274	17861391	LINE|L1|L1HS	-	chr3	17861243	18064084	MSTRG.37685.1	+	17861243,18041448,18063931	17861402,18041541,18064084	0.571429
smooth_muscle_cell_derived_from_H9	chr1	173637712	173637713	173637712	+	High_confidence	1557	1579	1853	64.777786	8.373255	chr1	173637250	173637824	LTR|ERV1|LTR10C	+	chr1	173637719	173734217	MSTRG.3823.4	+	173637719,173671233,173716002,173733712	173638034,173671334,173716066,173734217	0.515380
smooth_muscle_cell_derived_from_H9	chr11	74697509	74697534	74697509	-	High_confidence	3	3	16	0.559333	3.500000	chr11	74697389	74697636	LINE|L2|L2c	+	chr11	74696428	74697694	CHRDL2|ENST00000529912.5	-	74696428,74697204,74697600	74696585,74697297,74697694	0.750000
smooth_muscle_cell_derived_from_H9	chr14	100903653	100903705	100903673	-	High_confidence	37	47	194	6.781916	5.888264	chr14	100903521	100903697	SINE|MIR|MIRb	-	chr14	100879752	100903722	RTL1|ENST00000649591.1	-	100879752,100893443,100903290,100903604	100884874,100893505,100903386,100903722	0.994845
smooth_muscle_cell_derived_from_H9	chr17	59892715	59892745	59892716	-	High_confidence	8	13	36	1.258500	4.537845	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.805556
smooth_muscle_cell_derived_from_H9	chr19	46203082	46203083	46203082	-	High_confidence	31	32	32	1.118667	4.300498	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.531250
smooth_muscle_cell_derived_from_H9	chr1	39883147	39883150	39883149	+	RAMPAGE_only	3	6	8	0.279667	2.500000	chr1	39882992	39883198	SINE|MIR|MIRb	+	chr1	39897744	39899098	AL033527.2|ENST00000418255.1	+	39897744,39898635	39898066,39899098	0.875000
smooth_muscle_cell_derived_from_H9	chr7	137268523	137268529	137268528	-	High_confidence	3	5	7	0.244708	2.521641	chr7	137268351	137268846	LTR|ERV1|LTR2B	-	chr7	137227533	137268578	MSTRG.55165.3	-	137227533,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268578	1.000000
smooth_muscle_cell_derived_from_H9	chr19	18544026	18544036	18544035	-	High_confidence	7	8	15	0.524375	3.039149	chr19	18544020	18544075	SINE|MIR|MIR3	-	chr19	18538215	18544077	FKBP8|ENST00000597611.7	-	18538215,18539370,18539550,18541678,18543908	18538436,18539459,18539720,18541995,18544077	0.933333
smooth_muscle_cell_derived_from_H9	chr1	179877289	179877300	179877289	-	High_confidence	7	7	13	0.454458	3.188722	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179865064	179877790	TOR1AIP2|ENST00000495650.1	-	179865064,179877692	179865854,179877790	0.615385
smooth_muscle_cell_derived_from_H9	chr3	50226714	50226747	50226714	+	High_confidence	16	16	64	2.237333	5.152115	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	1.000000
smooth_muscle_cell_derived_from_H9	chr2	217937135	217937176	217937135	-	High_confidence	2	2	8	0.279667	2.500000	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.750000
smooth_muscle_cell_derived_from_H9	chr14	73366920	73366937	73366920	-	High_confidence	3	3	12	0.419500	2.918296	chr14	73366875	73367023	SINE|MIR|MIRb	+	chr14	73276548	73366920	NUMB|ENST00000560335.5	-	73276548,73282358,73287109,73292733,73297210,73316389,73323129,73355625,73366896	73277293,73282505,73287314,73292874,73297285,73316422,73323204,73355766,73366920	1.000000
smooth_muscle_cell_derived_from_H9	chr1	45522806	45522823	45522822	-	High_confidence	6	6	14	0.489417	2.777363	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.928571
smooth_muscle_cell_derived_from_H9	chrX	97310597	97310613	97310612	+	RAMPAGE_only	98	200	416	14.542666	6.118575	chrX	97310220	97310731	LINE|L2|L2a	-	chrX	96685016	97469765	DIAPH2|ENST00000373054.5	+	96685016,96735757,96738585,96758153,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348117,97383908,97429649,97469693	96685190,96735790,96738762,96758258,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247841,97348280,97384044,97429745,97469765	0.894231
smooth_muscle_cell_derived_from_H9	chr1	6200646	6200658	6200646	-	High_confidence	3	4	12	0.419500	3.022055	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	1.000000
smooth_muscle_cell_derived_from_H9	chr3	130179134	130179148	130179134	+	High_confidence	4	4	8	0.279667	2.500000	chr3	130177549	130180359	LTR|ERV1|HERVS71-int	-	chr3	130179202	130202963	MSTRG.40162.1	+	130179202,130201277	130179615,130202963	0.750000
smooth_muscle_cell_derived_from_H9	chr13	45206624	45206634	45206631	+	High_confidence	5	5	16	0.559333	3.323231	chr13	45206646	45206717	SINE|MIR|MIRb	+	chr13	45206354	45267333	GTF2F2|ENST00000494087.5	+	45206354,45252870,45267232	45207505,45252970,45267333	0.937500
smooth_muscle_cell_derived_from_H9	chr1	204116592	204116601	204116600	+	High_confidence	5	5	9	0.314625	2.503258	chr1	204116612	204116693	LINE|RTE-BovB|MamRTE1	+	chr1	204116506	204122917	SOX13|ENST00000480326.1	+	204116506,204117121,204117592,204121870,204122236,204122853	204116679,204117190,204117707,204121985,204122399,204122917	1.000000
smooth_muscle_cell_derived_from_H9	chr22	39021125	39021156	39021155	+	High_confidence	8	8	30	1.048750	4.098069	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
smooth_muscle_cell_derived_from_H9	chr15	66502611	66502746	66502611	-	High_confidence	55	55	605	21.149790	6.323420	chr15	66502390	66502588	LINE|L1|L1MA4	-	chr15	66500057	66502407	RPL4|ENST00000564647.5	-	66500057,66500292,66500948,66501374,66501787	66500176,66500376,66501105,66501504,66502407	0.945455
smooth_muscle_cell_derived_from_H9	chr4	154343620	154343628	154343627	-	RAMPAGE_only	20	21	30	1.048750	4.389898	chr4	154342020	154344363	DNA|TcMar-Tigger|Tigger1	-	chr4	154332888	154335168	DCHS2|ENST00000624983.1	-	154332888	154335168	1.000000
smooth_muscle_cell_derived_from_H9	chr1	174874426	174874439	174874426	+	High_confidence	4	4	11	0.384542	2.646439	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.636364
smooth_muscle_cell_derived_from_H9	chr10	72355145	72355146	72355145	-	High_confidence	13	13	19	0.664208	3.149673	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.947368
smooth_muscle_cell_derived_from_H9	chr3	188884266	188884287	188884283	+	RAMPAGE_only	4	5	12	0.419500	3.022055	chr3	188884141	188884305	SINE|MIR|MIRc	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
smooth_muscle_cell_derived_from_H9	chr20	37298760	37298761	37298760	+	RAMPAGE_only	11	11	11	0.384542	2.913977	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
smooth_muscle_cell_derived_from_H9	chr14	57274843	57274872	57274843	+	RAMPAGE_only	2	3	8	0.279667	2.500000	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.875000
smooth_muscle_cell_derived_from_H9	chr12	64293377	64293380	64293379	-	High_confidence	6	10	12	0.419500	3.277613	chr12	64287349	64293377	LINE|L1|L1PA2	-	chr12	64266982	64293383	C12orf56|ENST00000536975.5	-	64266982,64270535,64274900,64275297,64277679,64284663,64285953,64293280	64267288,64270714,64274975,64275372,64277803,64284753,64286060,64293383	0.583333
smooth_muscle_cell_derived_from_H9	chr2	128037132	128037140	128037139	+	High_confidence	175	184	298	10.417583	6.648794	chr2	128036817	128037258	LTR|ERV1|LTR10B1	+	chr2	128037143	128037812	MSTRG.31347.1	+	128037143	128037812	0.546980
smooth_muscle_cell_derived_from_H9	chr7	80929492	80929499	80929492	-	RAMPAGE_only	8	8	20	0.699167	3.576618	chr7	80929320	80929704	LTR|ERVL|MLT2A1	-	chr7	80744867	80922359	SEMA3C|ENST00000419255.6	-	80744867,80748897,80751268,80758330,80761615,80765154,80789305,80798091,80800756,80802664,80804105,80805638,80810610,80818298,80827424,80828584,80916678,80922264	80745307,80749028,80751336,80758488,80761657,80765243,80789528,80798236,80800826,80802779,80804248,80805758,80810701,80818418,80827487,80828745,80916819,80922359	0.550000
smooth_muscle_cell_derived_from_H9	chr9	22113500	22113501	22113500	+	High_confidence	57	57	72	2.517000	5.125871	chr9	22113274	22113535	LTR|ERVL-MaLR|MLT1E1	-	chr9	22113677	22121097	CDKN2B-AS1|ENST00000422420.1	+	22113677,22120199,22120503	22113799,22120410,22121097	0.805556
smooth_muscle_cell_derived_from_H9	chr2	174118081	174118085	174118084	-	RAMPAGE_only	11	13	21	0.734125	3.344698	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075408	174124315	OLA1|ENST00000392560.6	-	174075408,174078967,174081151,174081923,174123179,174123594,174124263	174075527,174079090,174081248,174082064,174123277,174123675,174124315	0.809524
smooth_muscle_cell_derived_from_H9	chr8	75324606	75324711	75324684	-	RAMPAGE_only	21	21	157	5.488458	5.950659	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223116	75278889	CASC9|NR_103849.2	-	75223116,75278712	75224358,75278889	0.528662
smooth_muscle_cell_derived_from_H9	chr17	1659361	1659374	1659361	-	RAMPAGE_only	4	4	12	0.419500	2.845351	chr17	1659014	1659325	SINE|Alu|AluSx3	-	chr17	1650630	1684807	MSTRG.22749.3	-	1650630,1651107,1651413,1651647,1653541,1653776,1655349,1656391,1656647,1658252,1658525,1659356,1659840,1660431,1660697,1660992,1661270,1661610,1661905,1673080,1673356,1673745,1674441,1675151,1675619,1675927,1676206,1676504,1676975,1677564,1678517,1678761,1679016,1679290,1679608,1680725,1680928,1681477,1681819,1683532,1684471	1650956,1651310,1651553,1652037,1653683,1654016,1655543,1656565,1656761,1658381,1658763,1659396,1660001,1660578,1660827,1661162,1661406,1661790,1662153,1673197,1673567,1673892,1674680,1675339,1675812,1676054,1676370,1676711,1677172,1677694,1678652,1678881,1679206,1679410,1679799,1680831,1681054,1681690,1682038,1683701,1684807	0.916667
smooth_muscle_cell_derived_from_H9	chr7	39013088	39013106	39013105	+	High_confidence	8	8	25	0.873958	3.733661	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.840000
smooth_muscle_cell_derived_from_H9	chr4	158173024	158173025	158173024	-	High_confidence	15	15	15	0.524375	3.506891	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.933333
smooth_muscle_cell_derived_from_H9	chr4	142474407	142474421	142474407	-	High_confidence	78	89	139	4.859208	5.868934	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.697842
smooth_muscle_cell_derived_from_H9	chr22	50785201	50785251	50785250	+	RAMPAGE_only	4	4	39	1.363375	4.105504	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.897436
smooth_muscle_cell_derived_from_H9	chr1	245984527	245984562	245984527	-	RAMPAGE_only	10	10	38	1.328417	4.313460	chr1	245984505	245984685	DNA|hAT-Charlie|MER5A	-	chr1	245814341	245988538	SMYD3|ENST00000488153.5	-	245814341,245858495,245863798,245927930,245929869,245988393	245814415,245858670,245863886,245928033,245929937,245988538	0.631579
smooth_muscle_cell_derived_from_H9	chr15	34588448	34588451	34588450	-	RAMPAGE_only	41	76	97	3.390958	5.039685	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34379067	34437466	GOLGA8A|NR_027409.1	-	34379067,34381700,34381967,34382150,34382385,34382796,34383440,34383745,34383960,34385047,34385253,34385426,34385739,34386624,34389643,34391122,34398633,34399154,34400711,34404916,34406673,34407523,34435382,34437397	34381613,34381856,34382068,34382251,34382529,34383053,34383528,34383853,34384047,34385157,34385338,34385474,34385778,34387952,34389768,34391426,34398729,34399203,34400759,34405055,34406870,34407735,34435471,34437466	0.752577
smooth_muscle_cell_derived_from_H9	chr1	84583328	84583329	84583328	-	RAMPAGE_only	6	6	9	0.314625	2.503258	chr1	84583111	84583698	LTR|ERV1|LTR9	+	chr1	84553120	84574480	CTBS|NM_004388.2	-	84553120,84563256,84563734,84565840,84569930,84570581,84574238	84555199,84563418,84563832,84566012,84570139,84570720,84574480	0.555556
smooth_muscle_cell_derived_from_H9	chr18	46868643	46868644	46868643	+	High_confidence	564	570	604	21.114832	5.688750	chr18	46868192	46868774	LTR|ERV1|LTR10B1	+	chr18	46868654	46876677	MSTRG.26221.1	+	46868654,46874769	46868990,46876677	0.937086
smooth_muscle_cell_derived_from_H9	chr18	46087015	46087019	46087018	-	High_confidence	5	7	12	0.419500	2.663533	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.750000
smooth_muscle_cell_derived_from_H9	chr1	181044863	181044864	181044863	+	RAMPAGE_only	7	7	10	0.349583	2.646439	chr1	181044850	181045171	DNA|hAT-Tip100|MER115	+	chr1	181034002	181056553	MR1|ENST00000282990.10	+	181034002,181049051,181050010,181053572,181055224	181034074,181049312,181050286,181053677,181056553	0.500000
smooth_muscle_cell_derived_from_H9	chr2	117623623	117623668	117623651	-	High_confidence	2	2	10	0.349583	2.921928	chr2	117623253	117629278	LINE|L1|L1PA3	+	chr2	117623130	117623493	MSTRG.31241.1	-	117623130	117623493	0.600000
smooth_muscle_cell_derived_from_H9	chr3	62255203	62255215	62255203	+	RAMPAGE_only	5	5	17	0.594292	3.454822	chr3	62255186	62255301	LINE|RTE-BovB|MamRTE1	-	chr3	62243575	62267813	PTPRG|ENST00000485215.5	+	62243575,62255123,62262797,62267409,62267684	62243898,62255215,62262894,62267492,62267813	0.705882
smooth_muscle_cell_derived_from_H9	chr4	127655756	127655862	127655756	+	RAMPAGE_only	45	51	274	9.578583	4.869277	chr4	127650220	127656245	LINE|L1|L1PA2	-	chr4	127632965	127716479	INTU|ENST00000503952.5	+	127632965,127643520,127656635,127663380,127669035,127674123,127684408,127685441,127687740,127700009,127704227,127705590,127706486,127708570,127710912,127713935,127716324	127633180,127644056,127656721,127663584,127669154,127674213,127684486,127685569,127687867,127700063,127704290,127705812,127706969,127708668,127711102,127714093,127716479	0.996350
smooth_muscle_cell_derived_from_H9	chr6	132134205	132134229	132134207	+	High_confidence	11	30	51	1.782875	4.391931	chr6	132134140	132134291	DNA|hAT-Tip100|MamTip2	+	chr6	132134410	132169374	LINC01013|ENST00000443303.1	+	132134410,132154655,132169000	132134483,132154777,132169374	0.607843
smooth_muscle_cell_derived_from_H9	chr5	150153304	150153344	150153311	+	RAMPAGE_only	3	3	21	0.734125	3.439936	chr5	150153259	150153413	LINE|CR1|L3b	+	chr5	150166780	150184558	CDX1|NM_001804.2	+	150166780,150182767,150183473	150167321,150182913,150184558	1.000000
smooth_muscle_cell_derived_from_H9	chr14	81192622	81192682	81192644	-	RAMPAGE_only	4	4	21	0.734125	3.880180	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	1.000000
smooth_muscle_cell_derived_from_H9	chr19	16077958	16077964	16077958	+	High_confidence	2	2	9	0.314625	2.503258	chr19	16077755	16078072	SINE|Alu|AluSx3	-	chr19	16077020	16088066	TPM4|ENST00000588410.1	+	16077020,16080914,16081912,16086422,16088026	16077130,16081075,16082046,16086540,16088066	0.666667
smooth_muscle_cell_derived_from_H9	chr14	81170394	81170431	81170412	-	High_confidence	3	3	15	0.524375	3.773557	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.800000
smooth_muscle_cell_derived_from_H9	chr11	321211	321244	321229	-	High_confidence	4	4	18	0.629250	3.130718	chr11	321227	321340	SINE|Alu|AluY	+	chr11	319668	321050	IFITM3|ENST00000399808.4	-	319668,320564	319990,321050	0.944444
smooth_muscle_cell_derived_from_H9	chr2	171231287	171231296	171231295	-	RAMPAGE_only	4	4	9	0.314625	2.500000	chr2	171231092	171231479	LTR|ERVL-MaLR|MLT1C	-	chr2	171053716	171091810	TLK1|ENST00000486857.5	-	171053716,171055082,171056470,171058150,171061080,171082780,171091613	171053853,171055172,171056566,171058197,171061156,171082852,171091810	0.555556
smooth_muscle_cell_derived_from_H9	chr18	63587246	63587247	63587246	+	High_confidence	11	11	16	0.559333	3.375000	chr18	63587176	63587346	DNA|hAT-Charlie|MER5B	-	chr18	63587299	63599198	SERPINB13|ENST00000269489.9	+	63587299,63588650,63589655,63592347,63592853,63594354,63595028,63596958	63587450,63588832,63589742,63592476,63592971,63594497,63595184,63599198	1.000000
smooth_muscle_cell_derived_from_H9	chr11	33141890	33141898	33141890	-	RAMPAGE_only	5	5	14	0.489417	2.521641	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33084583	33161465	CSTF3|ENST00000323959.8	-	33084583,33085712,33085894,33086987,33090531,33092270,33096305,33096834,33098689,33099033,33099607,33102176,33103106,33105566,33105882,33105997,33107902,33108385,33141666,33141884,33161298	33085289,33085773,33085989,33087141,33090727,33092340,33096408,33096978,33098764,33099150,33099717,33102339,33103184,33105693,33105917,33106064,33108000,33108418,33141762,33141986,33161465	1.000000
smooth_muscle_cell_derived_from_H9	chr19	46413560	46413612	46413611	-	High_confidence	79	81	523	18.283207	6.384341	chr19	46413579	46413731	LTR|Gypsy|LTR104_Mam	-	chr19	46410378	46413564	CCDC8|ENST00000307522.4	-	46410378	46413564	0.986616
smooth_muscle_cell_derived_from_H9	chr6	89655997	89655998	89655997	-	RAMPAGE_only	5	5	8	0.279667	2.521641	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642774	89674294	MSTRG.50258.2	-	89642774,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89662239,89662964,89664628,89668151,89671080,89672363,89672702,89673462,89674294	0.875000
smooth_muscle_cell_derived_from_H9	chr13	43053971	43053982	43053971	+	RAMPAGE_only	14	14	27	0.943875	3.838040	chr13	43052716	43054750	LINE|L1|L1PB1	-	chr13	43059514	43113205	MSTRG.14942.3	+	43059514,43065685,43068929,43078611,43085767,43107177	43062295,43065737,43069003,43078688,43085838,43113205	1.000000
smooth_muscle_cell_derived_from_H9	chr17	4143199	4143244	4143199	+	High_confidence	100	106	357	12.480124	5.420879	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.991597
smooth_muscle_cell_derived_from_H9	chr7	94424099	94424129	94424128	+	RAMPAGE_only	3	4	12	0.419500	3.251629	chr7	94424087	94424233	SINE|tRNA-RTE|MamSINE1	+	chr7	94422470	94430688	COL1A2|ENST00000481570.5	+	94422470,94425609,94425749,94425997,94426422,94427187,94428292,94429187	94425224,94425663,94425857,94426051,94427061,94427885,94428477,94430688	1.000000
smooth_muscle_cell_derived_from_H9	chr6	118582195	118582240	118582195	+	RAMPAGE_only	3	3	19	0.664208	3.787144	chr6	118580329	118588950	LTR|ERV1|HUERS-P3-int	+	chr6	118574401	118590900	MSTRG.50840.3	+	118574401,118576250,118582402	118574699,118577306,118590900	1.000000
smooth_muscle_cell_derived_from_H9	chr3	37163357	37163367	37163366	-	RAMPAGE_only	5	6	12	0.419500	2.918296	chr3	37163292	37163695	LTR|ERVL-MaLR|MLT1J2	+	chr3	37052889	37174564	LRRFIP2|ENST00000336686.8	-	37052889,37054410,37055085,37058789,37063741,37065809,37066223,37072789,37075023,37083635,37091466,37094791,37096615,37102923,37105454,37108072,37108636,37109526,37109652,37110990,37112914,37115053,37121491,37121634,37127629,37129062,37148893,37174538	37053961,37054515,37055165,37058910,37063791,37065942,37066325,37072882,37075116,37083806,37091538,37094908,37096660,37103013,37105523,37108129,37108684,37109571,37109703,37111065,37112980,37115095,37121536,37121691,37127680,37129149,37149038,37174564	0.750000
smooth_muscle_cell_derived_from_H9	chr10	53030109	53030112	53030109	-	High_confidence	21	21	41	1.433292	4.462815	chr10	53029943	53030661	LTR|ERV1|LTR30	-	chr10	53025257	53030102	MSTRG.6293.1	-	53025257,53029910	53026127,53030102	0.682927
smooth_muscle_cell_derived_from_H9	chr6	122482061	122482094	122482061	+	High_confidence	431	488	1544	53.975662	7.065566	chr6	122481961	122482259	SINE|Alu|AluYe5	-	chr6	122482078	122726517	MSTRG.50894.7	+	122482078,122581764,122585492,122585920,122633282,122675077,122717786,122725127	122482266,122581844,122585553,122586007,122633367,122675144,122717963,122726517	0.906088
smooth_muscle_cell_derived_from_H9	chr11	18530823	18530850	18530823	-	RAMPAGE_only	2	2	13	0.454458	2.931209	chr11	18530726	18531024	SINE|Alu|AluY	-	chr11	18529608	18588683	UEVLD|ENST00000396197.7	-	18529608,18534329,18536405,18544622,18546879,18558227,18564891,18566346,18570213,18575346,18578723,18588612	18532487,18534453,18536469,18544796,18547050,18558330,18565010,18566482,18570377,18575412,18578808,18588683	1.000000
smooth_muscle_cell_derived_from_H9	chr5	150114399	150115124	150114765	-	RAMPAGE_only	20	23	546	19.087248	7.217470	chr5	150114760	150114896	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.996337
smooth_muscle_cell_derived_from_H9	chr2	113583448	113583509	113583508	+	High_confidence	53	53	129	4.509625	4.390537	chr2	113583263	113583560	LINE|L1|L1MB3	-	chr2	113583652	113599037	WASH2P|NR_024077.2	+	113583652,113588549,113595062,113595368,113595692,113596067,113596380,113596670,113597485,113598397,113598606	113583928,113588703,113595161,113595515,113595829,113596203,113596578,113596829,113597638,113598466,113599037	0.945736
smooth_muscle_cell_derived_from_H9	chr1	168786921	168786936	168786921	+	High_confidence	16	16	33	1.153625	4.331977	chr1	168786791	168787303	LTR|ERVL-MaLR|MLT1L	+	chr1	168786938	168792886	LINC00626|ENST00000420691.1	+	168786938,168788780,168792330	168787228,168788889,168792886	0.939394
smooth_muscle_cell_derived_from_H9	chr1	11058808	11058830	11058808	-	RAMPAGE_only	5	5	19	0.664208	3.431624	chr1	11058682	11058785	SINE|MIR|MIRc	-	chr1	11054588	11060024	SRM|ENST00000376957.6	-	11054588,11054961,11055780,11056010,11056603,11058799,11059224,11059776	11054885,11055084,11055926,11056094,11056757,11058892,11059345,11060024	1.000000
smooth_muscle_cell_derived_from_H9	chr22	42115586	42115627	42115586	-	High_confidence	6	6	26	0.908917	4.132944	chr22	42115425	42115918	LTR|ERV1|LTR10G	-	chr22	42104713	42115618	MSTRG.37050.1	-	42104713,42115207	42108021,42115618	0.653846
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	102285740	102285759	102285758	-	RAMPAGE_only	2	2	6	0.230491	2.584963	chr8	102285712	102285783	DNA|hAT-Ac|OldhAT1	-	chr8	102252272	102412689	UBR5|NM_001282873.1	-	102252272,102257631,102258984,102261145,102261914,102264473,102265099,102266946,102268977,102270038,102271133,102272528,102275520,102275707,102276971,102278825,102279035,102280393,102281288,102285126,102285512,102286359,102287432,102288154,102289452,102293604,102293954,102294981,102295203,102295413,102295635,102296892,102297457,102298391,102298847,102299451,102299999,102304042,102305084,102311298,102311734,102312133,102312341,102313803,102314743,102323310,102326545,102327741,102329089,102329282,102342472,102345395,102346235,102346902,102360070,102360588,102361124,102361581,102412172	102254514,102257717,102259129,102261259,102262070,102264558,102265275,102267007,102269108,102270183,102271245,102272772,102275619,102275828,102277192,102278939,102279208,102280467,102281519,102285338,102285781,102286617,102287564,102288266,102289576,102293844,102294115,102295111,102295330,102295532,102295782,102296984,102297606,102298489,102298971,102299547,102300151,102304169,102305295,102311496,102311889,102312245,102312485,102313916,102314853,102323495,102326663,102327896,102329200,102329399,102342684,102345545,102346395,102347092,102360190,102360665,102361206,102361626,102412689	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	34918370	34918371	34918370	+	RAMPAGE_only	12	12	15	0.576227	2.950212	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	0.933333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	47067487	47067534	47067498	-	High_confidence	229	252	910	34.957748	6.107136	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.924176
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	10378261	10378262	10378261	-	RAMPAGE_only	5	5	8	0.307321	2.521641	chr3	10378137	10378218	SINE|MIR|MIR3	-	chr3	10326270	10401025	ATP2B2|ENST00000644553.1	-	10326270,10338175,10340241,10340492,10342751,10345383,10346030,10350111,10350397,10358690,10359881,10371808,10375429,10378251,10379242,10385267,10388276,10400952	10329125,10338358,10340349,10340704,10342965,10345575,10346137,10350199,10350577,10358925,10360123,10372051,10375644,10378410,10379284,10385327,10388402,10401025	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	21014923	21014959	21014923	+	RAMPAGE_only	2	2	13	0.499396	3.251629	chr21	21014441	21015680	DNA|TcMar-Tigger|Tigger1	+	chr21	20998314	21147705	MSTRG.16985.1	+	20998314,21110635	21110552,21147705	0.692308
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	37298760	37298761	37298760	+	RAMPAGE_only	11	12	13	0.499396	3.251629	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.923077
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	123060137	123060256	123060255	-	High_confidence	80	109	753	28.926576	5.651460	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.596282
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	33624688	33624721	33624688	+	RAMPAGE_only	3	3	8	0.307321	2.500000	chr20	33624662	33624719	LINE|L2|L2b	+	chr20	33619564	33636662	CBFA2T2|ENST00000491618.1	+	33619564,33623114,33623772,33624763,33628349,33629718,33636639	33619606,33623296,33623854,33625017,33628435,33629914,33636662	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	20658568	20658624	20658623	+	High_confidence	6	6	34	1.306114	4.003045	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.735294
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	15657883	15657884	15657883	+	RAMPAGE_only	10	10	10	0.384151	2.921928	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	92536601	92536704	92536601	-	High_confidence	94	100	196	7.529361	6.143625	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.887755
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	86938474	86938479	86938474	-	RAMPAGE_only	9	9	17	0.653057	4.087463	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86892213	86922104	AP001528.2|ENST00000528660.1	-	86892213,86896412,86921235	86892372,86896540,86922104	0.941176
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	127277080	127277081	127277080	-	RAMPAGE_only	9	9	10	0.384151	2.503258	chr2	127276569	127277409	LINE|L1|HAL1	+	chr2	127257289	127290893	ERCC3|ENST00000646042.1	-	127257289,127259295,127261227,127271335,127272864,127279172,127280446,127286702,127288659,127289336	127257727,127259448,127261346,127271453,127272961,127279375,127280631,127287017,127288864,127290893	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	163426319	163426347	163426346	+	RAMPAGE_only	3	3	8	0.307321	2.807355	chr6	163425976	163427403	LINE|L1|L1MC5a	-	chr6	163423133	163563454	QKI|ENST00000537041.5	+	163423133,163455278,163478779,163534981,163561981,163563443	163423213,163455421,163478896,163535125,163562069,163563454	0.625000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	185620079	185620108	185620090	-	RAMPAGE_only	2	2	9	0.345736	2.750000	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.555556
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	54759973	54759974	54759973	-	High_confidence	9	9	10	0.384151	2.947703	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	164879379	164879384	164879379	-	RAMPAGE_only	2	2	8	0.307321	2.521641	chr3	164878885	164879485	LTR|ERV1|LTR27D	+	chr3	164714094	164831480	LINC01324|NR_126405.1	-	164714094,164717571,164730871,164831413	164714482,164717791,164731040,164831480	0.625000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	46006299	46006314	46006299	+	RAMPAGE_only	7	8	23	0.883547	3.827910	chr19	46006105	46006330	DNA|hAT-Charlie|Charlie1a	-	chr19	46003005	46015333	CCDC61|ENST00000599044.1	+	46003005,46003418,46006558,46008139,46015048	46003166,46003501,46006716,46008301,46015333	0.826087
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	65570447	65570466	65570465	+	High_confidence	3	3	9	0.345736	2.750000	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570451	65615757	LINC01515|ENST00000601979.5	+	65570451,65572934,65585484,65585664,65615635	65570545,65573056,65585567,65585802,65615757	0.777778
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	218287279	218287280	218287279	-	High_confidence	7	7	10	0.384151	3.169925	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.800000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	67763144	67763196	67763156	-	RAMPAGE_only	4	4	28	1.075623	4.566109	chr11	67760097	67763209	LTR|ERV1|HERVH-int	+	chr11	67735599	67784229	OR7E11P|ENST00000642027.2	-	67735599,67748475,67751737,67756611,67756875,67762068,67784168	67736561,67749131,67751818,67756699,67756961,67762175,67784229	0.607143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	18706988	18707029	18707028	-	High_confidence	3	3	13	0.499396	3.251629	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18705417	18706129	IGSF22|ENST00000510673.1	-	18705417,18705816	18705617,18706129	0.538462
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrY	4036474	4036532	4036501	+	High_confidence	14	14	83	3.188454	4.958419	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	0.867470
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	122882365	122882395	122882365	+	High_confidence	5	5	21	0.806717	3.421928	chr11	122881733	122882629	LINE|L1|L1ME3D	-	chr11	122882527	122905892	C11orf63|NM_199124.2	+	122882527,122885760,122903924,122905171	122882972,122886193,122904444,122905892	0.952381
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	13419711	13419734	13419729	-	RAMPAGE_only	3	3	15	0.576227	3.324863	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.933333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	85682862	85682891	85682862	-	RAMPAGE_only	25	29	49	1.882340	5.165730	chr11	85682520	85682971	DNA|hAT-Tip100|MER115	+	chr11	85657563	85665138	CREBZF|NR_028027.1	-	85657563,85662388,85663523,85663814	85660597,85662457,85663601,85665138	0.591837
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	26399421	26399448	26399442	-	High_confidence	11	11	32	1.229283	4.066784	chr7	26399411	26399720	DNA|hAT-Charlie|MER33	+	chr7	26372018	26399418	LOC105375304|NR_136272.1	-	26372018,26399340	26372568,26399418	0.718750
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	212792444	212792473	212792444	-	High_confidence	9	11	39	1.498189	4.660671	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.794872
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	123900665	123900686	123900685	+	RAMPAGE_only	3	3	6	0.230491	2.584963	chrX	123900710	123900786	SINE|Alu|AluY	+	chrX	123860271	123913965	XIAP|ENST00000355640.3	+	123860271,123885630,123888618,123891237,123892730,123900492,123906987	123860545,123886539,123888718,123891316,123892773,123900693,123913965	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	12800944	12801045	12800953	-	High_confidence	6	6	79	3.034794	4.986627	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.949367
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	182030861	182030872	182030861	+	High_confidence	4	4	9	0.345736	2.947703	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.555556
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	81170402	81170423	81170413	-	High_confidence	15	26	75	2.881133	5.495225	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.733333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	156254901	156254963	156254935	-	High_confidence	4	4	23	0.883547	4.142915	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156020534	156254931	LOC101929378|NR_110250.2	-	156020534,156022671,156024465,156254777	156021899,156022817,156024607,156254931	0.565217
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	35115816	35115845	35115816	+	High_confidence	6	6	27	1.037208	4.208410	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	10941135	10941145	10941135	+	RAMPAGE_only	4	4	9	0.345736	2.725481	chr7	10941109	10941301	LINE|L2|L2b	-	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	58054206	58054219	58054218	-	RAMPAGE_only	4	5	10	0.384151	3.121928	chr14	58053997	58054183	SINE|MIR|MIR1_Amn	-	chr14	58000760	58152213	ARMH4|ENST00000267485.7	-	58000760,58005047,58012118,58096723,58131511,58133089,58137989,58152074	58004804,58005182,58012150,58096981,58131721,58133341,58139414,58152213	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	10363706	10363707	10363706	+	High_confidence	29	29	30	1.152453	4.418157	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.800000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	54296695	54296713	54296695	+	RAMPAGE_only	2	2	11	0.422566	2.646439	chr4	54296613	54296722	DNA|hAT-Charlie|MER5B	-	chr4	54233093	54298247	MSTRG.19727.24	+	54233093,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54280315,54285370,54285840,54287429,54288798,54289008,54290312,54295124	54233443,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54280482,54285486,54285963,54287541,54288898,54289114,54290554,54298247	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	138880196	138880197	138880196	-	RAMPAGE_only	11	11	11	0.422566	3.277613	chr5	138880161	138880436	SINE|Alu|AluJb	-	chr5	138872631	138875368	LRRTM2|ENST00000518785.1	-	138872631,138874907	138874128,138875368	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	92244943	92244950	92244943	-	High_confidence	5	5	12	0.460981	2.594907	chr7	92244870	92245026	DNA|hAT-Charlie|MER20B	+	chr7	92200357	92245795	KRIT1|ENST00000412043.6	-	92200357,92201306,92213194,92213891,92214610,92221901,92222821,92225719,92226525,92234448,92234807,92235402,92236412,92237666,92240992,92242033,92244001,92244901,92245426	92200804,92201423,92213401,92213979,92214777,92222053,92222978,92225827,92226682,92234592,92234923,92235646,92236542,92237759,92241152,92242137,92244149,92245171,92245795	0.916667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	28354039	28354062	28354039	-	High_confidence	4	4	14	0.537812	3.392747	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329373	28354186	ZSCAN31|ENST00000446222.5	-	28329373,28336789,28353861,28354130	28329778,28336943,28353952,28354186	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	81065424	81065474	81065458	+	RAMPAGE_only	3	3	16	0.614642	3.640224	chr5	81065333	81065960	LINE|L1|HAL1ME	-	chr5	81070023	81088564	RASGRF2|ENST00000502677.1	+	81070023,81073198,81080120,81080595,81085801,81086834,81087127	81070581,81073452,81080200,81080789,81085911,81086953,81088564	0.687500
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	41186121	41186140	41186139	-	RAMPAGE_only	3	3	8	0.307321	2.750000	chr1	41186124	41186319	SINE|MIR|MIR1_Amn	+	chr1	41027198	41163017	SCMH1|NM_001172221.1	-	41027198,41028583,41033982,41037361,41046406,41048689,41070594,41075218,41113282,41116921,41142877,41151613,41160874,41161363,41162778	41028319,41028726,41034048,41037541,41046598,41048890,41070721,41075451,41113526,41117010,41143112,41151684,41160898,41161432,41163017	0.625000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	84368663	84368699	84368670	-	High_confidence	5	5	18	0.691472	3.734522	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.777778
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	67920093	67920100	67920099	+	High_confidence	3	4	8	0.307321	2.521641	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	241372946	241372963	241372962	+	RAMPAGE_only	11	11	31	1.190868	4.415061	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241356296	241466030	FARP2|ENST00000373287.8	+	241356296,241373083,241403827,241404798,241407536,241411032,241413306,241417961,241431678,241434157,241434961,241436480,241441303,241456746,241462522,241463334,241463898,241465459	241356388,241373290,241403932,241404841,241407615,241411130,241413421,241418109,241431774,241434321,241435030,241436538,241441556,241456922,241462612,241463468,241463980,241466030	0.935484
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	44914321	44914322	44914321	+	High_confidence	141	143	171	6.568983	5.074711	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.894737
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	80301327	80301328	80301327	+	RAMPAGE_only	33	34	34	1.306114	4.275415	chr4	80301302	80301442	DNA|TcMar-Tigger|Tigger9b	+	chr4	80335719	80963756	C4orf22|NM_152770.2	+	80335719,80362753,80583092,80869992,80944809,80963516	80335879,80362884,80583183,80870135,80944939,80963756	0.764706
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	66408519	66408533	66408519	+	High_confidence	4	4	9	0.345736	2.750000	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	26505937	26505941	26505938	-	RAMPAGE_only	16	21	33	1.267699	4.327820	chr8	26505710	26505993	SINE|Alu|AluSx1	+	chr8	26504679	26513967	PNMA2|NM_007257.5	-	26504679,26509547,26513815	26509243,26509677,26513967	0.969697
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	124171528	124171529	124171528	-	High_confidence	26	26	26	0.998793	4.161978	chr8	124171344	124171724	LTR|ERVL-MaLR|THE1D	-	chr8	124046070	124171522	FER1L6-AS2|NR_103547.1	-	124046070,124047556,124058787,124060167,124171427	124046776,124047693,124058972,124060792,124171522	0.884615
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	180870516	180870521	180870518	-	High_confidence	8	14	26	0.998793	4.238901	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180707588	180870178	LOC101928882|NR_109986.1	-	180707588,180711192,180711309,180725514,180733478,180734486,180737492,180747879,180748245,180751347,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180733682,180734606,180737814,180748043,180748319,180751410,180782124,180810470,180847624,180870178	0.576923
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	224210526	224210527	224210526	-	High_confidence	7	7	11	0.422566	3.095795	chr1	224210478	224210598	LINE|L2|L2a	+	chr1	224208746	224210412	AC092809.2|ENST00000453760.5	-	224208746,224210240	224209011,224210412	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	67825465	67825509	67825508	+	High_confidence	4	4	14	0.537812	3.235926	chr15	67825556	67825685	SINE|MIR|MIR3	+	chr15	67825515	67834555	SKOR1|ENST00000554054.5	+	67825515,67825935,67829178,67830190,67830817,67832273,67832606,67833191,67833741	67825625,67828144,67829269,67830298,67830889,67832348,67832681,67833257,67834555	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	72693353	72693364	72693353	-	RAMPAGE_only	27	27	52	1.997586	4.549011	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.980769
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	40097688	40097711	40097688	-	High_confidence	3	3	7	0.268906	2.521641	chr1	40097465	40097687	SINE|MIR|MIR	-	chr1	40071460	40097727	PPT1|ENST00000642050.1	-	40071460,40076841,40078559,40080396,40089409,40091328,40092044,40092397,40097114	40074183,40076913,40078658,40080487,40089512,40091399,40092172,40092507,40097727	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	7946875	7946898	7946878	+	High_confidence	177	178	617	23.702122	6.369258	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8296455	MSTRG.12430.5	+	7946869,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8143646,8244057,8247844,8248149,8296367	7946977,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8143779,8244209,8247919,8248176,8296455	0.980551
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	103140136	103140156	103140136	-	High_confidence	2	2	6	0.230491	2.584963	chr10	103139920	103140218	SINE|Alu|AluJo	-	chr10	103099925	103140192	NT5C2|ENST00000487810.5	-	103099925,103101044,103101234,103105705,103106588,103111744,103139405,103140116	103100019,103101102,103101326,103105801,103106706,103111805,103139479,103140192	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	160199150	160199156	160199155	+	High_confidence	59	62	113	4.340907	4.627089	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.955752
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	112850264	112850284	112850264	+	High_confidence	2	2	8	0.307321	2.807355	chr1	112850184	112850373	SINE|MIR|MIR	+	chr1	112850075	112877867	AL390729.1|ENST00000422022.1	+	112850075,112877729	112850427,112877867	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	161750426	161750438	161750426	+	High_confidence	4	4	19	0.729887	3.725481	chr1	161750400	161750488	LINE|L2|L2c	-	chr1	161749779	161757162	MSTRG.1932.3	+	161749779,161751654,161751865,161752367,161753074,161756785	161750145,161751781,161751984,161752464,161753261,161757162	0.894737
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	67792073	67792128	67792127	-	RAMPAGE_only	3	3	8	0.307321	2.750000	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701471	67833436	MSTRG.1047.2	-	67701471,67707593,67777457,67833316	67705576,67707712,67777507,67833436	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	102246226	102246242	102246226	-	High_confidence	4	4	17	0.653057	3.750000	chr14	102246199	102246391	LTR|ERV1|HERVFH21-int	+	chr14	102229119	102246159	MOK|ENST00000519058.5	-	102229119,102232534,102233687,102246056	102229657,102232708,102233789,102246159	0.705882
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	34244698	34244699	34244698	-	RAMPAGE_only	5	5	8	0.307321	2.750000	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34218343	AC138409.2|ENST00000507274.1	-	34175821,34179012,34182679,34218294	34175957,34179097,34182867,34218343	0.625000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	44914395	44914410	44914409	+	High_confidence	7	7	19	0.729887	3.197160	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.842105
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	52570267	52570324	52570323	+	RAMPAGE_only	16	18	41	1.575019	4.686582	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.634146
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	139437381	139437402	139437401	-	High_confidence	2	2	8	0.307321	2.807355	chr5	139437311	139437364	SINE|MIR|MIR	-	chr5	139420201	139437560	DNAJC18|ENST00000507405.5	-	139420201,139425004,139426171,139428537,139437371	139420225,139425114,139426357,139428683,139437560	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	102431228	102431260	102431244	-	High_confidence	27	27	106	4.072001	5.297246	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.924528
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	38825332	38825361	38825356	+	RAMPAGE_only	3	5	16	0.614642	3.640224	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	73787493	73787505	73787493	+	High_confidence	6	6	14	0.537812	3.378783	chr11	73787272	73787558	SINE|Alu|AluSx1	+	chr11	73787315	73864611	MRPL48|ENST00000310614.11	+	73787315,73805026,73808312,73825707,73844806,73859906,73863171,73864295	73787992,73805079,73808350,73825796,73844976,73860009,73863261,73864611	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	134613081	134613120	134613112	-	RAMPAGE_only	11	13	49	1.882340	4.155133	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606429	134614903	SAR1B|ENST00000508363.5	-	134606429,134608371,134609570,134612690	134607066,134608503,134609674,134614903	0.959184
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	135027134	135027156	135027134	-	High_confidence	48	49	114	4.379322	5.453964	chr6	135026909	135027216	SINE|Alu|AluSz6	+	chr6	134987653	135027156	HBS1L|ENST00000529641.5	-	134987653,134993757,134996776,134997396,135002733,135027066	134987791,134993875,134996942,134997656,135002842,135027156	0.807018
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	15928376	15928383	15928382	+	High_confidence	14	16	26	0.998793	4.373661	chr21	15927832	15928523	LTR|ERVL|LTR41C	-	chr21	15928295	16488329	MIR99AHG|ENST00000635845.1	+	15928295,16071113,16181590,16231055,16391613,16487489	15928529,16071398,16181687,16231115,16391685,16488329	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	129904553	129904578	129904553	-	RAMPAGE_only	3	3	10	0.384151	2.947703	chr8	129904249	129904641	LTR|ERVL|LTR16E2	+	chr8	129849291	129903351	FAM49B|ENST00000639004.1	-	129849291,129849326,129850834,129852161,129854265,129855610,129855674,129862228,129862262,129871374,129879388,129903311	129849324,129849369,129850914,129852278,129854343,129855673,129855747,129862260,129862335,129871496,129879471,129903351	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	149217925	149217932	149217931	+	High_confidence	72	74	132	5.070794	6.423335	chr6	149217688	149218082	LTR|ERVL-MaLR|MLT1J	+	chr6	149217935	149245554	AL031056.1|ENST00000635954.1	+	149217935,149218622,149229931,149243728	149218084,149218776,149229995,149245554	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	176162925	176162969	176162937	-	RAMPAGE_only	3	4	14	0.537812	3.238901	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.714286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	32505904	32505922	32505921	+	RAMPAGE_only	3	3	7	0.268906	2.584963	chr5	32505649	32506189	LTR|ERVL-MaLR|MLT1K	+	chr5	32531632	32601323	SUB1|ENST00000506237.5	+	32531632,32588511,32591562,32598960,32601004	32531916,32588584,32591685,32599069,32601323	0.571429
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	6820197	6820198	6820197	+	RAMPAGE_only	4	5	6	0.230491	2.584963	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6785323	7769706	CAMTA1|ENST00000303635.11	+	6785323,6820180,6825091,7091303,7249490,7467829,7640399,7661725,7663352,7670910,7677598,7732447,7736343,7736930,7737254,7737958,7744834,7745844,7747709,7751198,7752458,7755637,7766458	6785575,6820250,6825210,7091371,7249626,7467901,7640553,7661866,7665199,7671037,7677733,7732599,7736540,7737009,7737570,7738482,7745022,7746091,7747781,7751392,7752533,7755668,7769706	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	217524	217535	217524	+	High_confidence	4	4	8	0.307321	2.750000	chr3	217318	217820	LINE|L2|L2a	-	chr3	217534	328223	CHL1|ENST00000449294.6	+	217534,244612,319682,325958,328166	217700,244692,319867,326064,328223	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	102431154	102431167	102431154	-	High_confidence	5	5	12	0.460981	3.095795	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	26474335	26474346	26474345	+	RAMPAGE_only	7	10	15	0.576227	3.773557	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.800000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	55140652	55140655	55140654	-	High_confidence	12	20	20	0.768302	3.546439	chr19	55140496	55140779	SINE|Alu|AluSx4	+	chr19	55132827	55140922	TNNT1|ENST00000589745.5	-	55132827,55133886,55134065,55137102,55137960,55140882	55132960,55133927,55134156,55137212,55138074,55140922	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	48708832	48708873	48708832	+	High_confidence	12	12	47	1.805510	3.882884	chr7	48708556	48708983	LTR|ERVL|MER74A	+	chr7	48708326	48711582	AC091770.2|ENST00000649656.1	+	48708326,48708794,48711156	48708703,48708914,48711582	0.893617
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	81442402	81442516	81442402	-	RAMPAGE_only	5	6	49	1.882340	4.611419	chr8	81442364	81442801	LINE|L1|L1ME2	+	chr8	81440325	81447439	MSTRG.25370.1	-	81440325,81444816,81447313	81444601,81444989,81447439	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	17005385	17005450	17005385	-	High_confidence	6	6	24	0.921963	3.538320	chr1	17005163	17005347	SINE|MIR|MIR3	-	chr1	17000282	17005395	ATP13A2|ENST00000508222.5	-	17000282,17000399,17002033,17002295,17004331,17004706,17005013,17005373	17000312,17000507,17002103,17002373,17004411,17004821,17005072,17005395	0.791667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	37147694	37147696	37147694	-	High_confidence	4	9	11	0.422566	2.921928	chr2	37147318	37147662	LINE|L1|L1PA4	-	chr2	37107272	37147806	EIF2AK2|ENST00000405334.5	-	37107272,37107473,37109193,37114730,37119958,37122505,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687	37107395,37107527,37109295,37114859,37120139,37122664,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147806	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	39407682	39407786	39407682	+	High_confidence	9	10	67	2.573812	5.226318	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.970149
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	89272854	89272891	89272859	-	High_confidence	3	3	23	0.883547	3.936180	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	5466715	5466741	5466715	+	RAMPAGE_only	4	7	29	1.114038	4.137538	chr6	5466680	5466808	DNA|hAT-Charlie|MER5B	-	chr6	5261525	5771580	FARS2|ENST00000274680.8	+	5261525,5368549,5404541,5431040,5545179,5613168,5771290	5261660,5369182,5404701,5431172,5545340,5613320,5771580	0.620690
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	53464773	53464785	53464773	+	RAMPAGE_only	3	4	8	0.307321	2.521641	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	205093975	205093977	205093976	+	RAMPAGE_only	3	5	8	0.307321	2.521641	chr2	205093818	205094099	LINE|RTE-BovB|MamRTE1	-	chr2	205103691	205121688	PARD3B|ENST00000489565.1	+	205103691,205104425,205113490,205118920,205121590	205103769,205104514,205113577,205119046,205121688	0.625000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	59234315	59234326	59234315	+	RAMPAGE_only	10	10	20	0.768302	2.900052	chr17	59234099	59234367	SINE|Alu|AluY	+	chr17	59220561	59273021	GDPD1|ENST00000581276.5	+	59220561,59234491,59245413,59248739,59257121,59257750,59267040,59270935,59272784	59220751,59234534,59245549,59248785,59257240,59257840,59267174,59270995,59273021	0.800000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	23705502	23705514	23705513	-	RAMPAGE_only	8	8	21	0.806717	3.646439	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.904762
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	39627120	39627121	39627120	-	High_confidence	11	11	11	0.422566	3.095795	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	2740046	2740079	2740064	+	High_confidence	4	4	10	0.384151	3.121928	chr12	2740070	2740311	DNA|hAT-Charlie|MER112	+	chr12	2740092	2742855	LINC02371|ENST00000613818.1	+	2740092,2742073,2742504	2740201,2742180,2742855	0.700000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	67183456	67183485	67183484	-	High_confidence	5	6	15	0.576227	3.324863	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.933333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	8376199	8376200	8376199	+	RAMPAGE_only	14	14	19	0.729887	3.576618	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8370932	8379313	PTPRM|ENST00000583153.2	+	8370932,8371759,8376045,8376461,8378264,8379166	8371006,8371810,8376200,8376597,8378414,8379313	0.789474
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	92104175	92104190	92104175	+	RAMPAGE_only	10	10	22	0.845132	3.879664	chr13	92103672	92104445	LINE|L1|L1M4	-	chr13	91398618	92867237	GPC5|NM_004466.5	+	91398618,91448760,91693186,91728531,91756294,91907936,92144829,92866281	91399209,91448922,91693881,91728665,91756420,91908057,92144989,92867237	0.636364
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	95000465	95000481	95000465	+	RAMPAGE_only	6	6	15	0.576227	3.378783	chr4	95000399	95000534	SINE|Alu|AluSc	+	chr4	94996231	95154673	BMPR1B|ENST00000512312.5	+	94996231,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547	94996384,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95154673	0.933333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	27445105	27445120	27445106	-	RAMPAGE_only	9	15	26	0.998793	3.749275	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.961538
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	83179178	83179179	83179178	+	RAMPAGE_only	19	19	20	0.768302	3.616349	chr15	83178896	83179386	LTR|ERVL|LTR53	+	chr15	83180801	83184796	AC103876.1|ENST00000561498.1	+	83180801,83184647	83181021,83184796	0.650000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	18063197	18063216	18063197	-	High_confidence	3	3	11	0.422566	2.921928	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	54330760	54330779	54330778	+	High_confidence	26	26	47	1.805510	5.078639	chr7	54329994	54330847	LTR|ERVL|MER21C	-	chr7	54330696	54349845	LINC01445|NR_120515.1	+	54330696,54347293,54348897	54330818,54347365,54349845	0.702128
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	99023380	99023425	99023424	+	RAMPAGE_only	6	6	23	0.883547	4.011365	chr9	99023460	99023631	LINE|L1|L1MC5	+	chr9	98943712	99070792	COL15A1|NM_001855.4	+	98943712,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.913043
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	143039246	143039277	143039256	+	High_confidence	15	15	72	2.765888	5.181218	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.958333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	155612437	155612457	155612437	+	High_confidence	2	3	6	0.230491	2.584963	chrX	155612307	155612443	SINE|MIR|MIR3	-	chrX	155612564	155782459	SPRY3|NM_001304990.1	+	155612564,155767961,155773765	155612647,155768136,155782459	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	173369526	173369535	173369526	-	High_confidence	3	3	12	0.460981	2.913977	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363779	173370446	AC097534.2|ENST00000609153.1	-	173363779,173369433,173370291	173364198,173369610,173370446	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	81192660	81192712	81192660	-	RAMPAGE_only	2	2	15	0.576227	3.807355	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.866667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	50715096	50715097	50715096	-	High_confidence	4	4	7	0.268906	2.584963	chr13	50714806	50715412	LTR|ERVL-MaLR|MLT1E2	-	chr13	50711007	50715483	DLEU7|ENST00000443723.1	-	50711007,50715425	50713240,50715483	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	92958976	92958992	92958976	-	RAMPAGE_only	4	4	13	0.499396	2.688722	chr14	92958818	92959042	SINE|MIR|MIRb	-	chr14	92946330	93036880	ITPK1|ENST00000556954.5	-	92946330,92951945,92958200,92962354,92962750,93016675,93036846	92946493,92952013,92958366,92962395,92962849,93016801,93036880	0.923077
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	10170533	10170540	10170539	+	High_confidence	9	9	20	0.768302	3.892407	chr12	10170491	10170780	SINE|Alu|AluSg	-	chr12	10170728	10175522	TMEM52B|ENST00000545924.1	+	10170728,10175281	10170851,10175522	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	171091679	171091682	171091681	+	High_confidence	5	11	16	0.614642	3.773557	chr1	171091606	171091752	SINE|Alu|AluJr	-	chr1	171090918	171110878	FMO3|ENST00000479749.1	+	171090918,171092652,171103784,171107674,171108115,171110797	171090981,171092790,171103973,171107820,171108221,171110878	0.625000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	43467548	43467574	43467548	-	RAMPAGE_only	10	13	72	2.765888	5.062152	chr3	43466399	43467761	LINE|L1|L1ME1	+	chr3	43366347	43621965	ANO10|ENST00000350459.8	-	43366347,43432610,43549719,43555277,43561219,43565652,43574808,43580352,43598531,43600383,43605713,43621908	43366974,43432727,43549848,43555469,43561402,43565727,43574864,43580472,43598666,43600581,43605863,43621965	0.958333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	130612010	130612011	130612010	+	RAMPAGE_only	7	8	9	0.345736	2.500000	chr9	130611812	130612045	LINE|CR1|L3b	+	chr9	130579605	130638352	FUBP3|ENST00000319725.9	+	130579605,130595482,130609953,130612455,130612955,130614287,130616354,130617796,130620353,130622707,130623610,130626363,130630627,130631556,130631941,130632201,130634666,130635998,130637013	130579764,130595588,130609987,130612505,130613027,130614345,130616517,130617895,130620458,130622810,130623711,130626505,130630788,130631630,130632022,130632278,130634738,130636126,130638352	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	31117606	31117608	31117606	-	High_confidence	7	10	13	0.499396	3.238901	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	112483261	112483262	112483261	+	RAMPAGE_only	5	6	7	0.268906	2.807355	chr2	112483215	112483511	LTR|ERVL-MaLR|MLT1J	-	chr2	112482198	112483930	TTL|ENST00000485537.1	+	112482198,112483139	112482501,112483930	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	143281669	143281687	143281686	-	High_confidence	77	85	209	8.028758	5.663650	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.622010
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	50799863	50799890	50799882	+	RAMPAGE_only	6	6	27	1.037208	4.053661	chr5	50799661	50800035	LTR|ERVL-MaLR|MLT1A0	+	chr5	50667892	50842342	PARP8|ENST00000503561.7	+	50667892,50750150,50759642,50761820,50763147,50778068,50778559,50788522,50794206,50794852,50796981,50797137,50815431,50822334,50824907,50826754,50827943,50828311,50829891,50832780,50833978,50834841,50841965	50668125,50750188,50759732,50761898,50763242,50778129,50778650,50788589,50794332,50795417,50797032,50797233,50815524,50822400,50824975,50826803,50828056,50828384,50829961,50832854,50834048,50835015,50842342	0.851852
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	55982731	55982800	55982799	-	High_confidence	3	3	17	0.653057	3.750000	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.882353
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	132694330	132694356	132694330	-	RAMPAGE_only	22	22	37	1.421359	3.976011	chr5	132694136	132694396	SINE|Alu|AluSz6	+	chr5	132692626	132737578	KIF3A|NM_007054.6	-	132692626,132699170,132700215,132700646,132702086,132702557,132702884,132703462,132710958,132715756,132716244,132716844,132720608,132726127,132726353,132734204,132737413	132696682,132699295,132700284,132700700,132702212,132702668,132703065,132703619,132711057,132715931,132716442,132716984,132720714,132726212,132726498,132734478,132737578	0.945946
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	9391827	9391828	9391827	-	High_confidence	8	9	11	0.422566	3.277613	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9389914	9391822	THUMPD3-AS1|ENST00000522221.1	-	9389914,9391426	9390497,9391822	0.636364
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	18794054	18794078	18794077	+	High_confidence	14	14	59	2.266491	5.463069	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	24580676	24580703	24580689	+	High_confidence	3	3	11	0.422566	3.121928	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.818182
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	11795569	11795579	11795578	+	High_confidence	33	33	57	2.189661	4.107349	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287744.1	+	11795572,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.982456
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	54807582	54807594	54807582	+	High_confidence	7	7	14	0.537812	3.664498	chrX	54807588	54807638	SINE|MIR|MIRb	+	chrX	54807598	54815694	MAGED2|ENST00000375053.6	+	54807598,54809302,54809721,54810820,54811249,54811573,54812156,54812944,54813117,54813487,54814660,54815247	54807802,54809376,54810213,54811129,54811313,54811653,54812251,54813024,54813160,54813550,54814775,54815694	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	57571323	57571353	57571323	+	RAMPAGE_only	5	5	24	0.921963	3.572624	chr12	57571268	57571350	LINE|Penelope|Penelope1_Vert	-	chr12	57550063	57584771	KIF5A|NM_004984.2	+	57550063,57563438,57563619,57564107,57564459,57564917,57567125,57567493,57568962,57569255,57569534,57569986,57571320,57572060,57572579,57575083,57575639,57576086,57576268,57576760,57577712,57578008,57578237,57580955,57581414,57581869,57582601,57583100,57584217	57550400,57563526,57563693,57564212,57564508,57564973,57567213,57567618,57569067,57569404,57569683,57570162,57571389,57572267,57572726,57575272,57575757,57576151,57576378,57576862,57577773,57578080,57578342,57581172,57581568,57581952,57582629,57583215,57584771	0.916667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	133369912	133369998	133369958	-	RAMPAGE_only	3	3	23	0.883547	4.368523	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.956522
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	52543591	52543603	52543591	-	RAMPAGE_only	2	2	6	0.230491	2.584963	chr14	52543581	52543672	LINE|L2|L2a	+	chr14	52430589	52552506	TXNDC16|ENST00000281741.8	-	52430589,52439203,52440563,52455323,52457089,52470036,52470511,52482229,52482821,52488362,52490390,52490838,52511239,52514879,52519171,52536718,52537598,52542370,52543397,52544263,52552315	52432587,52439394,52440724,52455462,52457174,52470173,52470680,52482289,52482965,52488486,52490451,52491005,52511390,52514970,52519293,52536793,52537672,52542453,52543630,52544371,52552506	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	153674331	153674348	153674337	-	High_confidence	2	2	9	0.345736	2.500000	chrX	153674234	153674570	LINE|L2|L2a	+	chrX	153671498	153674345	PNCK|ENST00000488168.5	-	153671498,153672565,153673008,153674273	153672200,153672697,153673078,153674345	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	56157338	56157459	56157338	+	High_confidence	21	24	285	10.948306	5.075570	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.919298
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	98608953	98608962	98608953	+	High_confidence	3	3	7	0.268906	2.521641	chr2	98608860	98609049	DNA|hAT|MER53	-	chr2	98608578	98618515	UNC50|ENST00000409975.5	+	98608578,98610774,98616206,98616431,98618167	98610039,98610895,98616346,98616533,98618515	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	75306448	75306460	75306448	-	High_confidence	12	21	54	2.074416	4.759065	chr16	75306282	75306398	LINE|CR1|L3	-	chr16	75293697	75306545	CFDP1|ENST00000570103.5	-	75293697,75305023,75306386	75294042,75305182,75306545	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	176246620	176246646	176246645	+	RAMPAGE_only	15	17	33	1.267699	4.620152	chr2	176246370	176246706	LINE|RTE-BovB|MamRTE1	+	chr2	176269394	176338025	MTX2|NM_001006635.2	+	176269394,176270215,176296859,176297848,176323391,176326824,176328292,176328873,176329300,176330583,176337492	176269669,176270419,176296907,176297895,176323464,176326901,176328385,176328912,176329426,176330660,176338025	0.696970
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	10521501	10521526	10521525	+	High_confidence	6	6	28	1.075623	4.253434	chr6	10521558	10521623	LINE|L2|L2a	+	chr6	10521484	10621422	GCNT2|ENST00000474518.1	+	10521484,10527473,10528630,10621350	10521594,10527660,10528841,10621422	0.785714
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	95516107	95516123	95516122	+	High_confidence	8	12	24	0.921963	3.855389	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.958333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	48708379	48708401	48708400	+	High_confidence	42	51	148	5.685436	5.891625	chr7	48708130	48708556	LTR|ERVL|MER70B	-	chr7	48708326	48711582	AC091770.2|ENST00000649656.1	+	48708326,48708794,48711156	48708703,48708914,48711582	0.587838
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	100647744	100647780	100647772	-	RAMPAGE_only	6	6	39	1.498189	4.702565	chr8	100647601	100647728	SINE|MIR|MIRc	-	chr8	100572881	100649665	SNX31|NM_152628.3	-	100572881,100577018,100584110,100588865,100596638,100600348,100608493,100611999,100612994,100617619,100630326,100635896,100649273,100649448	100573960,100577075,100584188,100588979,100596842,100600441,100608563,100612087,100613085,100617730,100630391,100636011,100649348,100649665	0.641026
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	169697625	169697631	169697625	+	RAMPAGE_only	10	11	16	0.614642	3.373557	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169662721	169723183	CLCN3|ENST00000504131.6	+	169662721,169663113,169663526,169680049,169687657,169689042,169690529,169692113,169695611,169697188,169703997,169706867,169713078,169719906	169662738,169663114,169663617,169680207,169687757,169689230,169690652,169692320,169695692,169697734,169704184,169707266,169713295,169723183	0.937500
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	67231053	67231107	67231106	-	RAMPAGE_only	2	2	7	0.268906	2.807355	chr10	67230665	67236674	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	125874500	125874512	125874502	-	High_confidence	2	3	8	0.307321	2.521641	chr11	125874041	125875038	LTR|ERV1|HUERS-P3-int	+	chr11	125873448	125874528	AP000842.3|ENST00000569238.1	-	125873448	125874528	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	103684981	103684988	103684987	+	RAMPAGE_only	6	6	11	0.422566	2.721928	chr14	103684918	103685042	SINE|MIR|MIRc	-	chr14	103675551	103686200	KLC1|ENST00000553325.5	+	103675551,103675688,103677414,103679383,103684985,103685637	103675601,103675756,103677523,103679518,103685036,103686200	0.545455
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	48044786	48044789	48044786	+	RAMPAGE_only	5	6	9	0.345736	2.750000	chr11	48044816	48044902	LINE|L2|L2b	+	chr11	47980726	48121247	PTPRJ|ENST00000534219.5	+	47980726,48110057,48121002	47981008,48110076,48121247	0.555556
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	110179306	110179344	110179306	-	RAMPAGE_only	6	6	45	1.728680	4.632965	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	0.977778
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	31997378	31997379	31997378	+	High_confidence	48	48	49	1.882340	3.420638	chr4	31996206	31997789	LTR|ERV1|LTR12C	+	chr4	31997378	32155406	LOC102723828|NR_125936.1	+	31997378,32146052,32155313	31997822,32146267,32155406	0.959184
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	31959178	31959202	31959201	+	High_confidence	3	3	9	0.345736	2.503258	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959418	31993107	KIAA1551|ENST00000312561.8	+	31959418,31960776,31970188,31980877,31987238,31992377	31959491,31960871,31970356,31985957,31987322,31993107	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	95793883	95793922	95793907	+	RAMPAGE_only	2	2	10	0.384151	3.169925	chr5	95793796	95793956	DNA|hAT-Tip100|MER45A	+	chr5	95731174	95796367	RHOBTB3|ENST00000379982.7	+	95731174,95731858,95736888,95748332,95752238,95755395,95763507,95768045,95780251,95783796,95788761,95793058	95731684,95732084,95737075,95748487,95752350,95755761,95763620,95768166,95780425,95783963,95788858,95796367	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	99410051	99410147	99410146	+	High_confidence	8	10	41	1.575019	4.326360	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.804878
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	130692954	130692996	130692981	+	High_confidence	23	23	130	4.993964	5.822280	chr2	130693010	130693142	SINE|Alu|AluY	+	chr2	130692974	130704747	MSTRG.15320.6	+	130692974,130693307,130695236,130695466,130696341,130702253	130693171,130693796,130695334,130695591,130696409,130704747	0.884615
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	166850123	166850133	166850123	+	RAMPAGE_only	7	12	19	0.729887	3.836592	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.947368
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	74969714	74969717	74969714	+	RAMPAGE_only	2	2	7	0.268906	2.807355	chr10	74969693	74969726	LINE|L2|L2a	-	chr10	74842619	75022125	KAT6B|ENST00000648369.1	+	74842619,74959969,74969659,74970019,74972506,74975398,74977315,74979223,74981786,74985079,75020581,75021125,75021880	74843478,74960078,74969775,74970101,74972639,74976330,74977437,74979339,74981928,74985241,75020813,75021285,75022125	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	58305629	58305670	58305664	+	High_confidence	8	8	58	2.228076	5.242150	chr19	58305670	58306101	LTR|ERVK|LTR3	+	chr19	58305376	58312462	ERVK3-1|ENST00000609864.5	+	58305376,58306087,58312020,58312165	58305445,58306216,58312061,58312462	0.586207
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	49371242	49371273	49371242	+	RAMPAGE_only	5	5	13	0.499396	3.085055	chr12	49371035	49371545	LINE|L1|L1MB3	-	chr12	49367546	49463625	SPATS2|ENST00000547865.5	+	49367546,49371227,49441729,49460769,49462274	49367587,49371290,49441816,49461037,49463625	0.692308
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	237085319	237085333	237085319	+	High_confidence	3	4	12	0.460981	3.022055	chr2	237085222	237085359	LINE|L2|L2	-	chr2	237085311	237100466	COPS8|ENST00000354371.6	+	237085311,237087126,237088604,237089861,237094089,237095821,237096821,237097662	237086042,237087197,237088653,237089994,237094197,237095884,237096869,237100466	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	63618045	63618046	63618045	-	High_confidence	24	29	34	1.306114	4.726410	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.588235
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	73080433	73080467	73080438	-	High_confidence	6	7	26	0.998793	4.392747	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.730769
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	6918647	6918680	6918679	-	High_confidence	7	7	34	1.306114	4.337175	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6912275	6918682	RNF144A-AS1|NR_033997.1	-	6912275,6914192,6915822,6916849,6918401	6913664,6914350,6915967,6917224,6918682	0.852941
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100897920	100897921	100897920	+	RAMPAGE_only	8	9	9	0.345736	2.725481	chr14	100897872	100897994	LINE|L1|L1ME5	+	chr14	100894963	100947076	MSTRG.8371.58	+	100894963,100897592,100898956,100906097,100906935,100916678,100931913,100932464,100935771,100938879,100940364,100942761,100944808,100947033	100895039,100897732,100899085,100906163,100916658,100931545,100932138,100934051,100937488,100938956,100940450,100942838,100944925,100947076	0.555556
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	176652459	176652480	176652472	+	RAMPAGE_only	3	3	10	0.384151	3.121928	chr5	176652030	176652581	LTR|ERVL-MaLR|MLT1K	-	chr5	176647619	176657056	TSPAN17|ENST00000507471.1	+	176647619,176652742,176654894,176656077,176656699,176656894	176647702,176652913,176655020,176656125,176656816,176657056	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	95121535	95121558	95121535	-	High_confidence	3	4	15	0.576227	3.378783	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.866667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	140700445	140700452	140700445	+	High_confidence	767	1019	1963	75.408857	5.047815	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.980132
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	137309813	137309817	137309813	-	RAMPAGE_only	8	13	19	0.729887	3.530493	chr7	137309097	137310388	DNA|TcMar-Tigger|Tigger1	-	chr7	137227363	137343774	PTN|ENST00000393083.2	-	137227363,137236143,137251229,137253463,137254858,137343438	137228075,137236242,137251391,137253637,137254974,137343774	0.894737
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	80115068	80115069	80115068	+	RAMPAGE_only	7	7	7	0.268906	2.807355	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	70257706	70257707	70257706	+	High_confidence	13	13	16	0.614642	3.506891	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.937500
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	39083016	39083066	39083057	+	RAMPAGE_only	2	2	13	0.499396	3.251629	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.846154
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	37157472	37157484	37157472	-	High_confidence	3	3	12	0.460981	3.277613	chr2	37157310	37157469	SINE|MIR|MIRb	-	chr2	37141634	37157065	EIF2AK2|ENST00000390013.3	-	37141634,37146852,37147687,37148856,37156907	37141701,37146973,37147822,37148939,37157065	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	99906515	99906573	99906515	-	High_confidence	4	4	22	0.845132	4.106603	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.636364
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	141333516	141333592	141333591	+	RAMPAGE_only	14	17	55	2.112831	4.468981	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141636595	141733987	IL15|NM_172175.2	+	141636595,141656185,141688821,141719377,141720468,141721058,141721923,141727939,141729846,141732737	141636748,141656307,141689035,141719476,141720566,141721177,141722008,141727984,141729984,141733987	0.545455
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	80148048	80148049	80148048	+	High_confidence	82	84	96	3.687850	5.782550	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.593750
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	68040689	68040690	68040689	+	High_confidence	11	11	16	0.614642	3.250000	chr6	68040221	68040931	LTR|ERV1|LTR30	-	chr6	68040289	68083574	AL646090.2|ENST00000647954.1	+	68040289,68040840,68082551	68040598,68040941,68083574	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	78054835	78054882	78054854	+	High_confidence	113	114	296	11.370872	6.816555	chr13	78054705	78054994	LINE|L1|L1M4b	-	chr13	78054844	78578714	RNF219-AS1|ENST00000605996.5	+	78054844,78189607,78274252,78363571,78578476	78055064,78189696,78274337,78363731,78578714	0.648649
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	2726956	2726963	2726956	+	High_confidence	6	9	20	0.768302	3.884184	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	12681156	12681170	12681159	-	High_confidence	2	2	8	0.307321	2.521641	chr19	12680833	12681131	SINE|Alu|AluSx3	-	chr19	12679624	12681161	DHPS|ENST00000599481.1	-	12679624,12679800,12680195,12681032	12679719,12679922,12680325,12681161	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	126070623	126070624	126070623	-	High_confidence	9	9	13	0.499396	3.238901	chr10	126070617	126070770	LINE|CR1|X7A_LINE	-	chr10	126049602	126070633	ADAM12|ENST00000467145.1	-	126049602,126064805,126066716,126070386	126049669,126065001,126066806,126070633	0.692308
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	123061128	123061322	123061256	-	High_confidence	33	35	374	14.367250	6.515788	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.941176
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	58578132	58578239	58578132	-	High_confidence	13	16	81	3.111624	5.700659	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.580247
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	1389951	1389977	1389956	+	RAMPAGE_only	6	6	13	0.499396	3.238901	chr19	1389891	1390198	SINE|Alu|AluY	-	chr19	1387999	1395584	NDUFS7|ENST00000535382.1	+	1387999,1388524,1388832,1390870,1391118,1393241	1388304,1388593,1388938,1391050,1391165,1395584	0.769231
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	67387074	67387116	67387115	-	RAMPAGE_only	5	5	11	0.422566	2.521928	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.636364
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	210020772	210020791	210020790	+	RAMPAGE_only	5	5	12	0.460981	3.459432	chr2	210020725	210020879	SINE|MIR|MIRc	-	chr2	210002627	210021576	RPE|ENST00000429921.5	+	210002627,210003437,210015972,210016203,210016506,210017472,210019668	210002783,210003468,210016112,210016257,210016641,210017559,210021576	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	74148396	74148433	74148407	+	High_confidence	8	8	44	1.690265	4.708987	chr2	74148357	74148636	LINE|L2|L2	-	chr2	74148044	74149988	BOLA3-AS1|ENST00000533563.1	+	74148044,74148349,74148697	74148223,74148478,74149988	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	135965718	135965764	135965723	+	High_confidence	26	44	257	9.872683	6.099802	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.996109
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	8658876	8658905	8658885	-	High_confidence	15	22	62	2.381737	5.172300	chr11	8658830	8658957	DNA|DNA|MER126	-	chr11	8612036	8658836	TRIM66|ENST00000299550.10	-	8612036,8618749,8619382,8620049,8620445,8621031,8621644,8622815,8624358,8624708,8638653,8640226,8643008,8645740,8646446,8647969,8648415,8649739,8651799,8658736	8618003,8618968,8619535,8620124,8620572,8621321,8621819,8622876,8624454,8625228,8638815,8641152,8643126,8645887,8646561,8648086,8648548,8649887,8651903,8658836	0.903226
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	165370260	165370299	165370298	+	RAMPAGE_only	2	2	7	0.268906	2.521641	chr2	165370314	165370388	LINE|L2|L2a	+	chr2	165295772	165392310	SCN2A|NM_001040143.1	+	165295772,165297016,165307847,165308665,165309164,165310322,165312024,165313619,165313901,165315470,165323155,165326851,165331329,165342295,165344554,165354191,165365142,165367216,165370125,165373224,165374684,165377596,165380591,165381092,165386745,165388628	165296090,165297135,165307937,165308794,165309256,165310595,165312088,165313761,165314108,165315758,165323500,165326984,165331568,165342469,165344911,165354671,165365263,165367371,165370299,165373347,165374966,165377650,165380729,165381197,165387016,165392310	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	56028919	56028926	56028919	-	RAMPAGE_only	3	3	8	0.307321	2.807355	chr18	56028732	56028918	SINE|MIR|MIR3	-	chr18	56003616	56056040	AC006305.1|ENST00000650203.1	-	56003616,56025340,56027796,56037040,56055904	56003904,56025395,56028940,56037222,56056040	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	25081267	25081302	25081267	+	RAMPAGE_only	3	5	12	0.460981	3.095795	chr11	25081029	25081336	SINE|Alu|AluSq2	-	chr11	24729139	25082631	LUZP2|ENST00000620308.1	+	24729139,24732117,24738220,24763245,24905990,24914475,24976590,24983125,25050037,25077328,25078553	24729286,24732188,24738302,24763308,24906053,24914538,24976665,24983293,25050130,25077406,25082631	0.916667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	51354770	51354850	51354770	-	High_confidence	7	7	60	2.304906	4.758347	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	177507764	177507811	177507769	+	RAMPAGE_only	9	9	46	1.767095	4.580430	chr2	177507688	177507814	LINE|L2|L2b	-	chr2	177392767	177538418	MSTRG.15673.2	+	177392767,177420268,177434326,177436763,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177538073	177393124,177420358,177434417,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177538418	0.956522
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	52955040	52955041	52955040	+	RAMPAGE_only	12	12	12	0.460981	2.751629	chr6	52955078	52955376	SINE|Alu|AluSz6	+	chr6	52995619	52995950	RF00100|ENST00000365328.1	+	52995619	52995950	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	74485796	74485866	74485827	-	RAMPAGE_only	4	4	18	0.691472	3.734522	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	52661557	52661561	52661557	+	RAMPAGE_only	10	11	18	0.691472	3.572469	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	0.944444
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	28048446	28048447	28048446	+	High_confidence	23	23	27	1.037208	3.143465	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	79631425	79631442	79631441	+	High_confidence	4	4	12	0.460981	3.277613	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.916667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	45289390	45289392	45289390	+	RAMPAGE_only	2	4	6	0.230491	2.584963	chr21	45289210	45290050	LTR|ERV1|MER4D1	-	chr21	45288061	45297354	LINC00205|ENST00000647108.1	+	45288061,45289350,45290470,45296201	45288165,45289438,45293522,45297354	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	11356872	11356891	11356881	+	High_confidence	3	3	15	0.576227	3.506891	chr19	11356842	11356927	SINE|MIR|MIRc	+	chr19	11357695	11359894	PLPPR2|ENST00000588196.1	+	11357695,11359531	11357739,11359894	0.866667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	4355592	4355593	4355592	-	High_confidence	230	230	230	8.835475	5.115679	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.986957
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	48693209	48693220	48693219	+	High_confidence	37	38	88	3.380529	5.461813	chr22	48693219	48693333	LINE|L1|L1ME4c	+	chr22	48693246	48750408	FAM19A5|ENST00000406880.1	+	48693246,48707716,48749838	48693381,48707844,48750408	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	79254874	79254879	79254878	-	High_confidence	7	9	13	0.499396	3.334679	chr18	79254697	79255104	LINE|L2|L2a	+	chr18	79253576	79254856	AC104423.1|ENST00000591742.1	-	79253576,79254357	79253805,79254856	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	47743725	47743747	47743725	+	High_confidence	13	14	52	1.997586	5.203856	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.576923
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	10380467	10380478	10380467	+	RAMPAGE_only	2	2	8	0.307321	2.500000	chr1	10380425	10380719	SINE|Alu|AluSx	+	chr1	10344774	10381596	MSTRG.214.13	+	10344774,10345844,10347760,10348648,10352630,10360928,10361691,10363282,10365099,10365408,10368466,10371140,10372760,10374853,10375254,10376544	10344917,10345953,10347827,10348733,10352736,10361043,10361825,10363344,10365245,10365648,10368538,10372389,10374465,10375046,10375373,10381596	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	73712542	73712806	73712542	-	RAMPAGE_only	23	26	204	7.836682	6.003782	chr14	73712255	73712562	DNA|hAT-Charlie|Charlie15b	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	0.990196
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	195356099	195356212	195356211	-	High_confidence	28	31	137	5.262870	4.835580	chr3	195355936	195357733	LINE|L1|L1M1	+	chr3	195333081	195356212	ACAP2|ENST00000423531.3	-	195333081,195336931,195342470,195345258,195356067	195333123,195336976,195342654,195345317,195356212	0.759124
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	46243267	46243306	46243305	-	RAMPAGE_only	2	2	13	0.499396	3.418296	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.846154
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	42959478	42959496	42959478	+	High_confidence	6	6	14	0.537812	3.521641	chr1	42959490	42959595	LINE|L2|L2c	+	chr1	42959048	42983358	SLC2A1-AS1|NR_033967.1	+	42959048,42970248,42973973,42983124	42959577,42970394,42974188,42983358	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	20658312	20658349	20658348	+	High_confidence	12	18	49	1.882340	3.793296	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	176003041	176003075	176003074	-	High_confidence	3	3	12	0.460981	2.845351	chr4	176003011	176003179	SINE|MIR|MIR3	+	chr4	175632936	176002691	GPM6A|NM_005277.4	-	175632936,175640128,175640752,175651833,175673679,175701574,175812190,176002308	175635057,175640194,175640829,175651987,175673836,175701767,175812249,176002691	0.916667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	17910367	17910378	17910367	-	High_confidence	4	4	8	0.307321	2.750000	chr8	17908095	17912373	LTR|ERVK|HERVK-int	-	chr8	17864379	17910365	FGL1|ENST00000398056.6	-	17864379,17868547,17868915,17874018,17874361,17881998,17885491,17895446,17896169,17909884	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17895517,17896416,17910365	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	110440319	110440371	110440319	-	RAMPAGE_only	4	7	32	1.229283	4.538910	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.937500
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	55371804	55371806	55371804	-	RAMPAGE_only	3	6	9	0.345736	2.947703	chr15	55371592	55371758	SINE|MIR|MIRb	-	chr15	55358838	55372952	CCPG1|ENST00000568372.5	-	55358838,55365187,55371792	55360944,55365309,55372952	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	5894691	5894692	5894691	+	RAMPAGE_only	7	7	11	0.422566	3.095795	chr9	5894274	5894902	LTR|ERVL|LTR50	-	chr9	5890921	5908945	MLANA|ENST00000381471.1	+	5890921,5892449,5897556,5906884,5908639	5891302,5892551,5897653,5906998,5908945	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	67692441	67692468	67692441	-	High_confidence	2	3	11	0.422566	2.921928	chr14	67691650	67692395	LINE|L1|L1MEd	-	chr14	67678086	67692483	RDH11|ENST00000554035.5	-	67678086,67685014,67690211,67691139,67692437	67678423,67685165,67690421,67691244,67692483	0.727273
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	111036604	111036651	111036650	-	High_confidence	4	4	19	0.729887	3.725481	chr9	111036558	111036748	SINE|MIR|MIR3	-	chr9	110874320	111036207	LPAR1|ENST00000541779.5	-	110874320,110941420,110945373,110972072,110973480,111036121	110875722,110942168,110945401,110972220,110973558,111036207	0.736842
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	31587195	31587252	31587201	+	High_confidence	43	43	214	8.220833	5.357843	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.981308
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	110999531	110999536	110999535	-	High_confidence	6	7	10	0.384151	3.321928	chr9	110999490	110999712	LTR|ERVL-MaLR|MLT1A	-	chr9	110873777	110999466	LPAR1|ENST00000374430.6	-	110873777,110941420,110972072,110973480,110999392	110875722,110942168,110972220,110973558,110999466	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	113873326	113873347	113873346	-	High_confidence	10	11	42	1.613435	4.480641	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.761905
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	45720378	45720471	45720470	+	RAMPAGE_only	16	23	81	3.111624	4.497522	chr7	45720228	45720541	SINE|Alu|AluSx1	+	chr7	45574525	45723116	ADCY1|NM_021116.2	+	45574525,45592758,45610378,45622631,45648669,45657726,45660041,45662058,45677868,45678165,45679708,45684978,45685961,45686546,45703375,45703599,45704517,45708349,45710527,45713692	45575182,45592908,45610497,45622743,45648797,45657885,45660183,45662214,45678063,45678263,45679793,45685068,45686215,45686673,45703492,45703746,45704616,45708464,45710652,45723116	0.987654
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	997302	997328	997318	-	High_confidence	14	15	59	2.266491	4.971212	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.966102
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	101217578	101217595	101217594	-	High_confidence	6	7	27	1.037208	4.180833	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.962963
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	12409844	12409855	12409854	+	RAMPAGE_only	9	10	15	0.576227	3.640224	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.866667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	17026144	17026176	17026166	+	RAMPAGE_only	6	6	20	0.768302	3.546439	chrX	17026085	17026321	SINE|MIR|MIRc	+	chrX	16946861	17153272	REPS2|ENST00000303843.7	+	16946861,17006220,17022122,17025061,17029525,17047346,17052381,17054807,17062437,17068401,17069939,17074113,17077270,17103717,17133823,17135260,17138855,17147412	16947134,17006344,17022271,17025185,17029623,17047482,17052445,17054950,17062532,17068471,17069993,17074159,17077407,17103779,17133907,17135406,17138961,17153272	0.950000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	9986881	9986905	9986898	+	High_confidence	8	8	25	0.960378	4.373661	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.720000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	80147918	80147930	80147929	+	High_confidence	12	12	32	1.229283	4.386143	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	74174548	74174572	74174571	+	High_confidence	212	258	744	28.580840	6.786306	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	0.990591
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	69315803	69315839	69315818	+	High_confidence	6	6	18	0.691472	3.616875	chr10	69315806	69315937	SINE|MIR|MIRc	+	chr10	69315784	69401443	HK1|ENST00000298649.8	+	69315784,69343826,69359896,69364782,69368535,69369236,69369440,69376933,69379861,69382486,69384332,69384795,69386322,69389196,69392124,69394949,69398594,69400990	69316014,69343989,69360045,69364902,69368631,69369336,69369624,69377089,69380095,69382791,69384481,69384915,69386418,69389296,69392308,69395105,69398828,69401443	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	69314822	69314864	69314863	-	High_confidence	3	3	11	0.422566	3.121928	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	102822449	102822459	102822458	-	RAMPAGE_only	5	8	14	0.537812	3.392747	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	85750309	85750340	85750314	-	High_confidence	3	3	13	0.499396	3.418296	chr15	85750035	85750376	SINE|Alu|AluSz	+	chr15	85744108	85750281	AC021739.2|ENST00000558375.1	-	85744108,85748907,85750241	85744814,85749125,85750281	0.692308
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	10363872	10363898	10363872	+	High_confidence	4	4	17	0.653057	3.499228	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.823529
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	36278881	36278882	36278881	-	RAMPAGE_only	16	16	22	0.845132	3.913977	chr11	36278875	36279412	LTR|ERVL?|LTR87	-	chr11	36274324	36289424	COMMD9|ENST00000532705.1	-	36274324,36276136,36278476,36280711,36289361	36274772,36276240,36278616,36280837,36289424	0.727273
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	123179155	123179197	123179196	-	RAMPAGE_only	4	4	15	0.576227	3.506891	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.866667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	231072203	231072255	231072232	+	RAMPAGE_only	3	3	16	0.614642	3.640224	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.812500
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	6590246	6590293	6590292	+	High_confidence	7	7	31	1.190868	3.910179	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	65722895	65722919	65722918	-	High_confidence	3	3	12	0.460981	2.845351	chr5	65722781	65722883	DNA|hAT-Ac|OldhAT1	-	chr5	65680687	65723035	SGTB|ENST00000506816.1	-	65680687,65685367,65704278,65708488,65712960,65720707,65722756	65680794,65685472,65704378,65708558,65713064,65720829,65723035	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	153119468	153119469	153119468	-	RAMPAGE_only	10	10	10	0.384151	2.521928	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112113	153113515	SPRR2F|ENST00000468739.1	-	153112113,153113473	153112752,153113515	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	7913244	7913268	7913248	-	RAMPAGE_only	6	6	19	0.729887	3.405822	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.736842
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	52616758	52616768	52616767	-	RAMPAGE_only	4	4	9	0.345736	2.503258	chr19	52616561	52616863	SINE|Alu|AluSp	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	140898316	140898322	140898321	-	RAMPAGE_only	10	10	16	0.614642	2.905639	chr8	140898046	140898347	DNA|hAT-Charlie|MER5C	-	chr8	140658388	140890768	PTK2|ENST00000519654.5	-	140658388,140664916,140668268,140674297,140675459,140686631,140700890,140706118,140717597,140735250,140739017,140743229,140744651,140746759,140752231,140761164,140764233,140789473,140793353,140800458,140803542,140818276,140818879,140830471,140846259,140846598,140864311,140879470,140890542	140659678,140664997,140668424,140674404,140675499,140686694,140701022,140706205,140717709,140735455,140739107,140743330,140744767,140746860,140752316,140761262,140764290,140789526,140793384,140800576,140803650,140818354,140819020,140830526,140846322,140846678,140864399,140879637,140890768	0.562500
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	163423160	163423165	163423160	+	RAMPAGE_only	4	4	8	0.307321	2.521641	chr6	163423016	163423301	SINE|Alu|AluSx4	+	chr6	163415237	163563461	MSTRG.23298.8	+	163415237,163427025,163478779,163534981,163561981,163563419	163426992,163455421,163478896,163535125,163562069,163563461	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	89944251	89944252	89944251	-	RAMPAGE_only	30	39	42	1.613435	4.682587	chr14	89944085	89944442	LTR|ERVL-MaLR|THE1B	-	chr14	89797156	89952605	EFCAB11|ENST00000553871.5	-	89797156,89931540,89932525,89950096,89952388	89797324,89931631,89932627,89950142,89952605	0.785714
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	158167208	158167224	158167223	-	High_confidence	5	6	9	0.345736	3.000000	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158127544	158167212	FAM198B|ENST00000592586.1	-	158127544,158130785,158155610,158167176	158127614,158131012,158155825,158167212	0.555556
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	20736628	20736630	20736628	-	RAMPAGE_only	29	37	48	1.843925	4.099163	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	0.916667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	70401546	70401558	70401557	+	RAMPAGE_only	3	3	7	0.268906	2.521641	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	51814551	51814619	51814551	+	RAMPAGE_only	4	5	42	1.613435	4.406821	chr15	51814446	51814570	LINE|L2|L2c	+	chr15	51751560	51816368	TMOD2|ENST00000249700.8	+	51751560,51766372,51768261,51773711,51776931,51781043,51782720,51798196,51806376,51808419	51751712,51766567,51768418,51773834,51777018,51781174,51782828,51798340,51806521,51816368	0.928571
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	99892029	99892057	99892056	-	RAMPAGE_only	123	123	258	9.911098	5.096415	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.949612
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	49539126	49539152	49539126	+	RAMPAGE_only	8	8	25	0.960378	3.513270	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49527617	49543638	RCN3|ENST00000270645.7	+	49527617,49528466,49534192,49537032,49539118,49542552,49543105	49528058,49528714,49534395,49537205,49539179,49542752,49543638	0.960000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	1721704	1721708	1721704	-	High_confidence	3	3	8	0.307321	3.000000	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	121974512	121974537	121974512	-	High_confidence	3	3	7	0.268906	2.807355	chr10	121974357	121974506	DNA|hAT-Charlie|MER5A	-	chr10	121959364	121974285	NSMCE4A|ENST00000468209.5	-	121959364,121959500,121960357,121961422,121963237,121965285,121967654,121970938,121974003	121959410,121959595,121960406,121961517,121963328,121965385,121967806,121971069,121974285	0.571429
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	143070964	143070965	143070964	+	RAMPAGE_only	13	13	13	0.499396	3.546594	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143091361	143238352	ARHGAP15|ENST00000409869.5	+	143091361,143092156,143155476,143202133,143216383,143228580,143235945	143091422,143092258,143155655,143202202,143216445,143228668,143238352	0.615385
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	29280838	29280877	29280838	-	High_confidence	10	10	53	2.036001	5.041797	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.509434
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	113759884	113759899	113759894	-	High_confidence	6	6	18	0.691472	3.572431	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.555556
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	134485443	134485490	134485443	-	High_confidence	49	50	362	13.906269	6.491632	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.972376
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	67541763	67541778	67541763	+	High_confidence	4	4	8	0.307321	2.500000	chr15	67541546	67541874	SINE|Alu|AluSg	+	chr15	67542682	67807117	MAP2K5|NM_145160.2	+	67542682,67550033,67563282,67580753,67585889,67586845,67592925,67600684,67630887,67646230,67646387,67658552,67664596,67692478,67693517,67703336,67727915,67748230,67748568,67769601,67772706,67806645	67543470,67550082,67563350,67580823,67585930,67586913,67592974,67600749,67630927,67646299,67646469,67658614,67664645,67692552,67693568,67703408,67727945,67748257,67748601,67769663,67772752,67807117	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	153967482	153967517	153967495	+	High_confidence	5	5	15	0.576227	3.056565	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.866667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	571741	571774	571754	-	High_confidence	8	11	30	1.152453	4.281728	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.766667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	50783214	50783218	50783217	+	High_confidence	4	4	11	0.422566	2.846439	chr22	50783102	50783247	SINE|Alu|AluJr	-	chr22	50783253	50799305	RPL23AP82|ENST00000467796.5	+	50783253,50785172,50798654	50783294,50785293,50799305	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	99691413	99691446	99691445	+	RAMPAGE_only	2	2	7	0.268906	2.584963	chr3	99691450	99691571	DNA|hAT-Charlie|MER5A1	+	chr3	99638621	99794508	COL8A1|ENST00000621757.1	+	99638621,99691398,99744896,99790679,99794229	99638664,99691568,99745021,99791010,99794508	0.571429
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	3081029	3081038	3081032	-	RAMPAGE_only	2	2	8	0.307321	2.807355	chr16	3080480	3081056	LTR|ERVK|HERVK9-int	-	chr16	3076910	3078690	AC108134.3|ENST00000577123.5	-	3076910,3078230	3077443,3078690	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	127653749	127653792	127653785	+	RAMPAGE_only	5	5	27	1.037208	4.078419	chr9	127653827	127654016	LINE|L2|L2b	+	chr9	127651623	127684513	STXBP1|ENST00000647107.1	+	127651623,127653714,127658374,127660029,127661101,127663204,127665246,127666165,127668079,127669897,127672050,127673180,127675803,127676643,127678430,127680156,127682405,127683917,127684367	127651652,127653796,127658451,127660108,127661205,127663353,127665331,127666296,127668187,127669958,127672116,127673261,127675942,127676753,127678532,127680242,127682560,127683970,127684513	0.925926
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	24995212	24995270	24995212	+	RAMPAGE_only	6	6	37	1.421359	3.874536	chr15	24995035	24995326	SINE|Alu|AluSx4	+	chr15	24981993	25002830	MSTRG.8531.21	+	24981993,24998969,25000244,25001357,25002724	24998486,24999078,25000374,25001713,25002830	0.945946
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	12069749	12069786	12069758	+	High_confidence	38	46	141	5.416530	5.938451	chr17	12069730	12069890	LINE|CR1|L3	+	chr17	12069755	12125350	MAP2K4|ENST00000579089.5	+	12069755,12095574,12107789,12110374,12113232,12125293	12069849,12095694,12107909,12110426,12113360,12125350	0.702128
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	138347698	138347732	138347731	+	High_confidence	5	5	28	1.075623	3.643776	chr3	138347598	138347891	SINE|Alu|AluSx	-	chr3	138347696	138405533	MRAS|ENST00000289104.8	+	138347696,138372865,138397323,138398468,138400533,138402169	138348325,138373076,138397477,138398568,138400613,138405533	0.964286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	65053830	65053883	65053830	-	RAMPAGE_only	4	4	19	0.729887	3.905765	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.947368
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	102235451	102235473	102235451	-	High_confidence	4	4	13	0.499396	2.719295	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.846154
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	72305913	72305914	72305913	-	High_confidence	35	40	40	1.536604	4.293943	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	71787971	71787976	71787971	+	RAMPAGE_only	3	3	9	0.345736	2.947703	chr12	71788003	71788137	SINE|Alu|AluJb	+	chr12	71754873	71800285	RAB21|ENST00000261263.4	+	71754873,71769799,71770591,71773958,71782030,71782569,71785530	71755288,71769859,71770699,71774022,71782085,71782658,71800285	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	106682418	106682419	106682418	-	RAMPAGE_only	11	11	15	0.576227	3.664498	chr11	106682331	106682490	DNA|hAT-Charlie|MER5B	+	chr11	106674011	107018151	MSTRG.4980.1	-	106674011,106708511,106776438,106809992,106939459,106978618,106986069,107017752,107017949	106687756,106708666,106776582,106810478,106940178,106978740,106986131,107017860,107018151	0.933333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	69494978	69495008	69494978	+	High_confidence	6	6	37	1.421359	4.557854	chr10	69494989	69495143	SINE|MIR|MIR3	+	chr10	69494970	69507077	TSPAN15|ENST00000486093.5	+	69494970,69495593,69498279,69504437,69506123,69506828	69495036,69495689,69498396,69504485,69506240,69507077	0.864865
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	43508343	43508354	43508343	+	RAMPAGE_only	3	4	9	0.345736	2.750000	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	36265150	36265174	36265150	+	RAMPAGE_only	9	9	47	1.805510	4.624752	chr18	36264892	36265187	LTR|ERV1|MER65D	-	chr18	36187518	36272157	MOCOS|ENST00000261326.5	+	36187518,36195256,36198689,36199682,36203112,36205076,36213365,36215515,36220054,36248921,36251158,36256967,36260036,36266748,36268532	36187681,36195346,36198756,36200324,36203189,36205276,36213482,36215977,36220217,36249000,36251283,36257073,36260175,36266853,36272157	0.595745
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	48656561	48656593	48656561	-	High_confidence	8	8	26	0.998793	4.209867	chr20	48656369	48656903	LINE|L2|L2a	+	chr20	48624251	48657127	PREX1|ENST00000482556.5	-	48624251,48627547,48627860,48629448,48630727,48632276,48634675,48636462,48637710,48639765,48642167,48642406,48644408,48645850,48649299,48649995,48650893,48651395,48652585,48653360,48655289,48657039	48625927,48627615,48627963,48629621,48630794,48632639,48634775,48636683,48637752,48639894,48642258,48642489,48644497,48646057,48649576,48650206,48651055,48651583,48652706,48653497,48655375,48657127	0.923077
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	157394473	157394507	157394501	+	RAMPAGE_only	31	32	77	2.957963	4.723046	chr5	157394544	157394671	DNA|hAT-Charlie|MER5A	+	chr5	157269341	157395598	CYFIP2|NM_014376.3	+	157269341,157285338,157287018,157294782,157296672,157300714,157302793,157304237,157307760,157309742,157311663,157314343,157314968,157319761,157320654,157323920,157325481,157326170,157327972,157330741,157333326,157339056,157341069,157359004,157360281,157361467,157382589,157383264,157389188,157390520,157392832	157269583,157285478,157287108,157294860,157296774,157300896,157302890,157304366,157307865,157309834,157311781,157314463,157315094,157319928,157320802,157324074,157325638,157326267,157328049,157330850,157333446,157339256,157341157,157359148,157360372,157361598,157382662,157383359,157389427,157390668,157395598	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	76774952	76775026	76775025	+	High_confidence	4	4	22	0.845132	3.754442	chr6	76774716	76775166	LTR|ERVL|MER70A	+	chr6	76774982	76775860	AL590426.2|ENST00000607287.1	+	76774982,76775167	76775075,76775860	0.818182
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	38789809	38789824	38789812	-	RAMPAGE_only	5	5	13	0.499396	3.418296	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	0.923077
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	38948236	38948246	38948245	-	High_confidence	40	41	89	3.418945	5.950853	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	0.831461
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	40062368	40062401	40062369	+	High_confidence	6	7	25	0.960378	3.823935	chr17	40062342	40062502	SINE|MIR|MIR3	-	chr17	40062207	40093613	MSTRG.11507.6	+	40062207,40074191,40076870,40077507,40083834,40084609,40086706,40088241,40089205,40093019	40062459,40074541,40076938,40077608,40083982,40084815,40086853,40088500,40089333,40093613	0.960000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	109383412	109383504	109383454	-	High_confidence	10	10	102	3.918341	5.518671	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.990196
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	37088884	37088898	37088897	+	RAMPAGE_only	4	4	13	0.499396	3.026987	chr9	37088869	37089236	DNA|TcMar-Tigger|Tigger20a	-	chr9	37079895	37090401	EBLN3|NR_036592.1	+	37079895,37086667	37080536,37090401	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	52236207	52236239	52236238	-	RAMPAGE_only	9	9	31	1.190868	3.870014	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52167708	52291557	AL158066.1|ENST00000451298.1	-	52167708,52169986,52171157,52175638,52180581,52183975,52186682,52189638,52223238,52227004,52229325,52233063,52235219,52253744,52253936,52258528,52279840,52280651,52280861,52283237,52289821,52291506	52169304,52170099,52171248,52175776,52180654,52184114,52186823,52189914,52223331,52227096,52229431,52233144,52235281,52253833,52254018,52258590,52279905,52280715,52280961,52283357,52289983,52291557	0.580645
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	87531031	87531080	87531031	-	RAMPAGE_only	3	3	14	0.537812	3.546594	chr4	87530812	87530989	SINE|MIR|MIR1_Amn	-	chr4	87473334	87529504	SPARCL1|ENST00000282470.10	-	87473334,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87499585,87529504	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	193614817	193614861	193614817	+	High_confidence	4	4	24	0.921963	3.188722	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	19487898	19487901	19487900	-	High_confidence	18	36	46	1.767095	3.964558	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.760870
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	116496250	116496290	116496289	-	High_confidence	5	6	24	0.921963	3.788755	chr5	116496283	116496331	LINE|L2|L2	+	chr5	116486748	116495445	SEMA6A|ENST00000502996.5	-	116486748,116488107,116488887,116491739,116492326,116495412	116486966,116488196,116489007,116491830,116492485,116495445	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	80200773	80200800	80200773	-	RAMPAGE_only	2	3	9	0.345736	2.503258	chr15	80200660	80200771	SINE|MIR|MIR1_Amn	-	chr15	80195483	80252213	CTXND1|ENST00000560778.2	-	80195483,80203588,80252006	80202014,80203740,80252213	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	108451080	108451086	108451080	+	RAMPAGE_only	2	2	7	0.268906	2.521641	chr2	108451073	108451151	LINE|RTE-BovB|MamRTE1	-	chr2	108449883	108472899	GCC2|ENST00000409896.1	+	108449883,108451027,108452398,108468979,108469650,108472826	108449994,108451112,108452466,108469084,108472116,108472899	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	90405037	90405513	90405429	+	RAMPAGE_only	39	47	966	37.108994	6.991346	chr14	90405466	90405547	SINE|tRNA-RTE|MamSINE1	+	chr14	90396982	90408261	CALM1|ENST00000356978.8	+	90396982,90400064,90401258,90403861,90404378,90404688	90397233,90400095,90401402,90403968,90404514,90408261	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	26506707	26506809	26506773	-	RAMPAGE_only	15	21	92	3.534190	5.511410	chr8	26506707	26506876	LINE|L2|L2c	+	chr8	26504679	26513967	PNMA2|NM_007257.5	-	26504679,26509547,26513815	26509243,26509677,26513967	0.989130
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	30012296	30012341	30012331	-	High_confidence	5	5	19	0.729887	3.683542	chr16	30012328	30012431	LINE|L2|L2b	+	chr16	30007215	30012336	DOC2A|ENST00000563378.5	-	30007215,30008995,30009201,30009477,30009960,30010902,30012204	30007299,30009105,30009276,30009557,30010235,30010989,30012336	0.526316
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	58306153	58306189	58306188	+	High_confidence	4	4	13	0.499396	2.873141	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58312462	ERVK3-1|ENST00000609864.5	+	58305376,58306087,58312020,58312165	58305445,58306216,58312061,58312462	0.692308
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	120125620	120125637	120125627	+	High_confidence	17	18	67	2.573812	5.085479	chr8	120125674	120125869	DNA|hAT-Tip100?|MamRep1879	+	chr8	120125143	120277865	COL14A1|ENST00000432943.6	+	120125143,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120277484	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120277865	0.955224
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	151539248	151539282	151539265	-	RAMPAGE_only	6	6	20	0.768302	3.921928	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.550000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	81166243	81166252	81166251	-	RAMPAGE_only	4	5	9	0.345736	3.169925	chr14	81166191	81166439	LTR|ERVL-MaLR|MLT1J2	+	chr14	81012098	81170224	AC007262.2|ENST00000646052.1	-	81012098,81053682,81087466,81093581,81094214,81099398,81165192,81170108	81014404,81053816,81087652,81093737,81094324,81099526,81165381,81170224	0.777778
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	70590319	70590329	70590328	+	RAMPAGE_only	14	14	27	1.037208	3.143414	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.518519
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	33194695	33194715	33194695	-	High_confidence	5	5	17	0.653057	3.572469	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.941176
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	55618850	55618904	55618850	-	High_confidence	9	9	34	1.306114	4.594672	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.911765
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	54926974	54926981	54926974	+	High_confidence	5	5	12	0.460981	2.845351	chrX	54926860	54926986	LINE|CR1|L3	-	chrX	54927284	54928947	TRO|ENST00000469211.1	+	54927284,54928602	54927781,54928947	0.916667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	9965320	9965321	9965320	+	RAMPAGE_only	20	20	29	1.114038	4.155046	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.586207
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	35773706	35773745	35773744	-	RAMPAGE_only	6	6	24	0.921963	4.053509	chr13	35773606	35773823	DNA|DNA|UCON8	-	chr13	35771338	35855642	DCLK1|ENST00000379893.5	-	35771338,35793365,35805698,35808223,35809017,35810834,35822728,35827634,35828249,35836032,35839091,35854498,35855509	35774699,35793479,35805779,35808320,35809095,35810968,35822875,35827754,35828307,35836141,35839176,35854593,35855642	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	155612297	155612360	155612312	+	High_confidence	4	4	30	1.152453	4.351823	chrX	155612307	155612443	SINE|MIR|MIR3	-	chrX	155612564	155782459	SPRY3|NM_001304990.1	+	155612564,155767961,155773765	155612647,155768136,155782459	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	109532728	109532731	109532728	+	RAMPAGE_only	3	3	6	0.230491	2.584963	chr4	109532709	109532882	LTR|ERVL|LTR41B	-	chr4	109433814	109540896	SEC24B|ENST00000265175.5	+	109433814,109462900,109473003,109481676,109491326,109494614,109506327,109510008,109511956,109513746,109516527,109520365,109521116,109521419,109524817,109525345,109526225,109527321,109530288,109531384,109532638,109533592,109538492,109539560	109434002,109463644,109473186,109481781,109491407,109494856,109506512,109510111,109512083,109513856,109516640,109520484,109521172,109521626,109524941,109525504,109526399,109527432,109530464,109531522,109532743,109533685,109538596,109540896	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	139364707	139364741	139364740	+	RAMPAGE_only	5	5	23	0.883547	4.229871	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.695652
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	155869852	155869882	155869852	+	RAMPAGE_only	11	11	48	1.843925	4.613521	chr1	155869840	155870033	SINE|MIR|MIR	+	chr1	155859508	155885199	SYT11|ENST00000368324.4	+	155859508,155867964,155880499,155881197	155859795,155868791,155880623,155885199	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	23384856	23384873	23384865	-	High_confidence	21	24	60	2.304906	5.411837	chr21	23384605	23385150	LTR|ERVL|MLT2B3	-	chr21	23361103	23384861	D21S2088E|ENST00000262354.4	-	23361103,23364037,23372326,23372947,23384687	23362239,23364193,23372448,23373084,23384861	0.600000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	31119452	31119480	31119479	-	High_confidence	4	5	9	0.345736	2.503258	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	17282923	17282938	17282937	+	RAMPAGE_only	2	3	7	0.268906	2.584963	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.714286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	147383074	147383089	147383088	+	RAMPAGE_only	5	5	13	0.499396	3.392747	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147235015	147384205	STK32A|NM_001112724.1	+	147235015,147239538,147278123,147279246,147323897,147343005,147351064,147361516,147370653,147373168,147375089,147383440,147383889	147235199,147239686,147278179,147279398,147324071,147343043,147351154,147361614,147370770,147373294,147375218,147383505,147384205	0.923077
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	82733246	82733247	82733246	+	RAMPAGE_only	5	5	7	0.268906	2.807355	chr16	82733271	82733332	SINE|MIR|MIRb	+	chr16	82626969	83795077	CDH13|ENST00000428848.7	+	82626969,82858361,83032009,83217344,83344861,83486476,83602453,83670789,83678207,83748107,83779967,83783253,83795022	82627137,82858473,83032218,83217497,83345006,83486655,83602594,83670972,83678461,83748250,83780201,83783472,83795077	0.571429
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	28681084	28681085	28681084	+	RAMPAGE_only	7	7	8	0.307321	2.521641	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	4239748	4239771	4239748	-	High_confidence	5	5	12	0.460981	2.855389	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	1765678	1765710	1765678	-	RAMPAGE_only	11	14	38	1.459774	4.614369	chr6	1765547	1765692	SINE|MIR|MIR1_Amn	-	chr6	1623806	1930999	GMDS|ENST00000380805.6	-	1623806,1624471,1717507,1726415,1742467,1930102	1624231,1624540,1717643,1726512,1742586,1930999	0.868421
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	2757779	2757827	2757801	+	High_confidence	10	10	28	1.075623	3.985228	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.964286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	160142442	160142491	160142490	+	RAMPAGE_only	10	10	72	2.765888	5.687218	chr1	160142525	160142818	SINE|Alu|AluSx3	+	chr1	160127671	160143591	ATP1A2|ENST00000447527.1	+	160127671,160128651,160128979,160129265,160130101,160130421,160134483,160135144,160135433,160135838,160136246,160136620,160136900,160139639,160139892,160141293	160127820,160128850,160129089,160129400,160130291,160130597,160134620,160135295,160135602,160135993,160136370,160136715,160137031,160139741,160139984,160143591	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	112999762	112999785	112999784	-	High_confidence	5	5	9	0.345736	2.947703	chr9	112999325	112999997	LTR|ERVL|MER21C	-	chr9	112957742	112999091	ZNF883|ENST00000639709.1	-	112957742,112959125,112959349,112959792,112966649,112968821,112969339,112998120	112958036,112959171,112959451,112959903,112966740,112968941,112969380,112999091	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	98733221	98733222	98733221	+	High_confidence	4	4	7	0.268906	2.807355	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	34988764	34988785	34988764	-	High_confidence	4	4	16	0.614642	2.923231	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.937500
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100834661	100834738	100834707	+	High_confidence	6	6	29	1.114038	4.306257	chr14	100834648	100834738	LINE|L2|L2b	+	chr14	100833763	100861021	MEG3|ENST00000524035.5	+	100833763,100836166,100845457,100860690	100836075,100836300,100845533,100861021	0.965517
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	80485592	80485619	80485592	+	High_confidence	11	11	37	1.421359	4.650572	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.594595
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	25716028	25716066	25716028	+	RAMPAGE_only	2	2	13	0.499396	3.026987	chr21	25715978	25716294	SINE|Alu|AluSz	-	chr21	25702177	25717552	MSTRG.16988.6	+	25702177,25705978,25709433,25712339,25714639	25702265,25706086,25709449,25712382,25717552	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	19349983	19350020	19350008	+	RAMPAGE_only	6	7	19	0.729887	3.892407	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19352828	19355445	PDHA1|ENST00000479146.1	+	19352828,19354490,19355348	19353173,19354583,19355445	0.684211
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	23403938	23403944	23403938	-	RAMPAGE_only	2	2	7	0.268906	2.521641	chr1	23403928	23404035	LINE|RTE-BovB|MamRTE1	+	chr1	23381060	23424740	TCEA3|ENST00000450454.6	-	23381060,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23381474,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424740	0.714286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	137268452	137268453	137268452	-	High_confidence	25	25	29	1.114038	3.633974	chr7	137268351	137268846	LTR|ERV1|LTR2B	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.931034
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	81664294	81664344	81664294	+	RAMPAGE_only	6	6	39	1.498189	3.483744	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.974359
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	30429288	30429289	30429288	-	RAMPAGE_only	7	11	11	0.422566	3.321928	chr13	30428989	30429302	SINE|Alu|AluSq2	+	chr13	30202629	30307487	KATNAL1|NM_032116.4	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30307330	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307487	0.727273
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	46087042	46087068	46087042	-	High_confidence	6	7	26	0.998793	4.133661	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.730769
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	46243225	46243246	46243236	-	RAMPAGE_only	2	3	8	0.307321	2.500000	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	41995645	41995715	41995683	+	RAMPAGE_only	5	5	27	1.037208	3.852498	chr22	41995604	41995899	LINE|RTE-X|L4_C_Mam	-	chr22	41976933	41998221	SEPT3|ENST00000396425.7	+	41976933,41981644,41985983,41987205,41987621,41989566,41991572,41992663,41994289,41994620	41977074,41981836,41986112,41987287,41987759,41989684,41991668,41992763,41994341,41998221	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	107580245	107580267	107580245	+	High_confidence	1027	1038	4989	191.652973	7.133715	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.938064
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	65601882	65601949	65601882	+	RAMPAGE_only	3	3	18	0.691472	4.087463	chr1	65601809	65601923	SINE|MIR|MIR1_Amn	-	chr1	65565545	65626234	LEPR|ENST00000371058.1	+	65565545,65570472,65572325,65592656,65596447,65598659,65601391,65601842,65605037,65608752,65609946,65610213,65616007,65617963,65619927,65621352,65622905,65626122	65565605,65570802,65572449,65592865,65596593,65598804,65601682,65601960,65605237,65608901,65610106,65610296,65616224,65618146,65620023,65621458,65622981,65626234	0.777778
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	33021455	33021456	33021455	-	RAMPAGE_only	11	13	17	0.653057	2.733459	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.941176
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	89200340	89200354	89200344	+	RAMPAGE_only	3	3	9	0.345736	2.725481	chr15	89200250	89200502	Retroposon|SVA|SVA_F	-	chr15	89088149	89202360	ABHD2|NM_007011.7	+	89088149,89090282,89102499,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89202360	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	72363498	72363524	72363523	-	High_confidence	5	7	14	0.537812	3.546594	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	MSTRG.26328.2	-	72354457,72356930,72359417,72360109,72363930	72356101,72357056,72359521,72363606,72364346	0.928571
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	6200734	6200808	6200807	-	High_confidence	9	9	36	1.382944	3.781754	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	23656534	23656542	23656534	-	High_confidence	9	9	15	0.576227	2.896292	chr20	23656448	23656550	DNA|hAT-Charlie|MER5A1	-	chr20	23655224	23656390	AL121894.1|ENST00000450971.1	-	23655224,23656324	23655594,23656390	0.733333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	8697190	8697216	8697193	+	High_confidence	12	12	42	1.613435	4.784143	chr12	8697043	8697239	SINE|MIR|MIRc	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.761905
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	143853174	143853237	143853174	-	RAMPAGE_only	15	19	61	2.343322	5.369683	chr7	143853075	143853314	SINE|Alu|AluJr	-	chr7	143851367	143885373	TCAF1|NM_001206941.1	-	143851367,143857099,143858823,143860207,143861094,143862415,143862801,143885209	143854142,143857350,143859161,143860447,143861308,143862513,143863796,143885373	0.967213
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	100011499	100011544	100011499	-	RAMPAGE_only	3	3	10	0.384151	3.121928	chr2	100011412	100011657	DNA|hAT-Tip100|MamTip2	+	chr2	100006148	100007951	AFF3|ENST00000498090.1	-	100006148,100007147	100007017,100007951	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	79631260	79631329	79631302	+	High_confidence	125	125	530	20.360007	6.531212	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.973585
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	14963691	14963692	14963691	-	RAMPAGE_only	7	10	11	0.422566	2.846439	chr21	14963616	14963778	DNA|hAT-Charlie|MER5A	-	chr21	14961234	15064805	NRIP1|ENST00000318948.6	-	14961234,15014343,15043494,15064744	14968526,15014466,15043574,15064805	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	61488885	61488905	61488885	+	High_confidence	4	5	11	0.422566	2.913977	chr11	61488729	61489022	LINE|L2|L2b	-	chr11	61488841	61490931	PPP1R32|ENST00000366212.8	+	61488841,61489781,61490500,61490813	61488962,61489946,61490584,61490931	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	44732805	44732834	44732833	+	RAMPAGE_only	2	4	8	0.307321	3.000000	chr15	44732883	44732957	LTR|ERV1|MER49	+	chr15	44729000	44734000	TRIM69|ENST00000560141.2	+	44729000,44731362	44729552,44734000	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	32927967	32927984	32927967	+	RAMPAGE_only	141	141	473	18.170346	6.656938	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.871036
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	107580467	107580499	107580467	+	High_confidence	2	2	12	0.460981	3.095795	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.916667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	61813820	61813823	61813820	+	RAMPAGE_only	3	5	9	0.345736	2.500000	chr4	61813790	61813894	SINE|tRNA|LFSINE_Vert	-	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	73109470	73109478	73109477	+	RAMPAGE_only	3	3	7	0.268906	2.521641	chr14	73109511	73109779	SINE|Alu|AluY	+	chr14	73107301	73121313	RBM25|ENST00000527449.1	+	73107301,73109341,73110830,73112151,73114285,73119712	73107899,73109492,73111802,73112250,73114333,73121313	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	101399038	101399124	101399038	-	High_confidence	5	5	28	1.075623	3.624519	chr13	101399007	101399070	LINE|Penelope|Penelope1_Vert	+	chr13	101368544	101399154	NALCN|ENST00000376200.5	-	101368544,101376699,101376916,101378569,101395182,101399018	101368998,101376828,101377056,101378653,101395365,101399154	0.928571
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	50756933	50756950	50756949	+	High_confidence	4	4	13	0.499396	2.688722	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.692308
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	41871726	41871820	41871726	-	RAMPAGE_only	4	4	37	1.421359	4.550953	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.621622
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	97697123	97697147	97697123	-	High_confidence	2	2	9	0.345736	2.725481	chr9	97696883	97697140	LINE|L1|L1M4b	-	chr9	97674908	97697293	XPA|ENST00000462523.5	-	97674908,97682199,97684922,97687095,97689533,97693648,97697120	97675587,97682430,97685040,97687261,97689639,97693759,97697293	0.777778
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100906104	100906117	100906104	+	RAMPAGE_only	5	5	12	0.460981	3.022055	chr14	100905713	100906123	LINE|L1|L1MC5	-	chr14	100894963	100947076	MSTRG.8371.58	+	100894963,100897592,100898956,100906097,100906935,100916678,100931913,100932464,100935771,100938879,100940364,100942761,100944808,100947033	100895039,100897732,100899085,100906163,100916658,100931545,100932138,100934051,100937488,100938956,100940450,100942838,100944925,100947076	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	18793970	18793976	18793975	-	High_confidence	6	6	11	0.422566	3.321928	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18787970	18793982	LINC00652|NR_026884.1	-	18787970,18789573,18793664	18788898,18789709,18793982	0.727273
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	24318758	24318775	24318774	+	High_confidence	4	5	12	0.460981	3.418296	chr1	24318741	24318936	SINE|MIR|MIRc	+	chr1	24319321	24355318	GRHL3|ENST00000361548.8	+	24319321,24331425,24334644,24336481,24337077,24337635,24337991,24339667,24342114,24342693,24342891,24344896,24346552,24347467,24350057,24354373	24319568,24331612,24334706,24336827,24337151,24337789,24338103,24339762,24342273,24342772,24343025,24344931,24346641,24347553,24350122,24355318	0.916667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	44498985	44499003	44498985	-	RAMPAGE_only	2	2	9	0.345736	3.000000	chr20	44498888	44499217	LINE|L2|L2b	+	chr20	44497430	44522109	SERINC3|ENST00000342374.4	-	44497430,44501072,44503814,44504800,44506826,44509890,44511288,44512800,44513878,44521912	44500434,44501300,44503995,44504891,44506996,44510028,44511368,44512994,44514040,44522109	0.777778
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	39524248	39524316	39524257	+	RAMPAGE_only	13	17	62	2.381737	4.466473	chr3	39524197	39524480	LINE|L1|L1MEd	-	chr3	39502062	39524882	MOBP|ENST00000424090.5	+	39502062,39502534,39513382,39524242,39524443	39502275,39502914,39513606,39524326,39524882	0.919355
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	27331786	27331808	27331786	+	High_confidence	5	5	12	0.460981	3.084963	chr22	27331341	27331854	LTR|ERVL|LTR33	-	chr22	27331786	27379265	AL020994.2|ENST00000413244.1	+	27331786,27335157,27336096,27379185	27331938,27335330,27336262,27379265	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	100102067	100102109	100102067	+	High_confidence	4	4	16	0.614642	3.327820	chr7	100102098	100102390	SINE|Alu|AluSx1	+	chr7	100102060	100107148	AP4M1|ENST00000422582.5	+	100102060,100102674,100102863,100103408,100103611,100104091,100104873,100105044,100105239,100105444,100105958,100106240,100106402,100106657	100102393,100102781,100102960,100103519,100103692,100104154,100104940,100105098,100105346,100105539,100106003,100106291,100106514,100107148	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100829410	100829422	100829421	+	High_confidence	9	12	20	0.768302	3.784184	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829349	100947194	MSTRG.8371.30	+	100829349,100836166,100845457,100889648,100894698,100894871,100897592,100898956,100906097,100906935,100910232,100913431,100935771,100936177,100937402,100938879,100940364,100942761,100944808,100947033	100831534,100836300,100845533,100889756,100894770,100895039,100897732,100899085,100906163,100907132,100910304,100913521,100935881,100936310,100937488,100938956,100940450,100942826,100944925,100947194	0.950000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	202565232	202565299	202565232	+	RAMPAGE_only	17	18	83	3.188454	4.956693	chr2	202565124	202565329	LINE|CR1|L3b	-	chr2	202377433	202567751	BMPR2|ENST00000374574.2	+	202377433,202464808,202467518,202513718,202514887,202518821,202520086,202530793,202532584,202542310,202552715,202559695	202377550,202464979,202467689,202513829,202514979,202519052,202520201,202530954,202532732,202542447,202552888,202567751	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	65962630	65962631	65962630	+	High_confidence	25	25	36	1.382944	4.947703	chr11	65962525	65963442	LINE|L2|L2c	-	chr11	65961728	65965447	SART1|ENST00000530251.1	+	65961728,65964073,65964514,65965050,65965341	65962093,65964131,65964570,65965218,65965447	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	40894509	40894524	40894523	+	High_confidence	4	4	11	0.422566	2.646439	chr15	40894565	40894630	LINE|CR1|X6A_LINE	+	chr15	40894466	40902861	VPS18|ENST00000558474.1	+	40894466,40895937,40898906,40902615	40894859,40896079,40898998,40902861	0.727273
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	48683361	48683363	48683362	+	High_confidence	42	82	82	3.150039	4.984507	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.975610
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	77175229	77175260	77175259	+	High_confidence	8	8	24	0.921963	4.168296	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.958333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	38948299	38948305	38948304	-	High_confidence	3	3	8	0.307321	3.000000	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749338	38948273	LINC00639|ENST00000553932.5	-	38749338,38762101,38762923,38835230,38835541,38890740,38948177	38749654,38762174,38763045,38835398,38839204,38890798,38948273	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	60912725	60912750	60912725	+	RAMPAGE_only	3	3	9	0.345736	2.641604	chr11	60912641	60913600	LTR|ERV1|LTR1D	-	chr11	60913873	60923443	TMEM109|ENST00000227525.7	+	60913873,60919685,60920885,60921773	60914268,60919930,60920988,60923443	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	4736361	4736404	4736361	-	High_confidence	4	4	12	0.460981	2.792481	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.583333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	9567531	9567542	9567531	+	RAMPAGE_only	10	10	39	1.498189	2.946931	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9557313	9576275	AC092821.1|ENST00000520314.2	+	9557313,9558368,9559174,9560109,9560816,9565091,9567489,9570765,9571460,9573002,9573465,9574846	9557580,9558452,9559348,9560191,9564325,9565303,9569202,9570892,9571573,9573093,9573534,9576275	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	65181222	65181297	65181222	+	High_confidence	6	6	31	1.190868	3.702472	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.935484
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	66729219	66729344	66729279	-	High_confidence	18	19	137	5.262870	5.535469	chr11	66729233	66729349	SINE|MIR|MIRb	-	chr11	66715353	66729226	SPTBN2|ENST00000527010.1	-	66715353,66715829,66721083,66728740	66715395,66715981,66721262,66729226	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	8320379	8320401	8320400	+	High_confidence	7	7	19	0.729887	3.572431	chr12	8318355	8321168	LTR|ERV1|HERVS71-int	-	chr12	8320380	8369555	AC092745.2|ENST00000537764.1	+	8320380,8368981	8320426,8369555	0.789474
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100829513	100829732	100829513	+	High_confidence	11	12	137	5.262870	6.341472	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.839416
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	94052407	94052436	94052435	+	RAMPAGE_only	6	7	15	0.576227	3.664498	chr3	94052227	94052509	LINE|L2|L2c	-	chr3	93980269	94055279	MSTRG.18513.9	+	93980269,93995873,93996547,94003658,94035330,94036551,94039879,94043014,94049405,94050823,94053186	93980482,93995944,93996684,94003908,94035436,94036754,94039988,94043240,94049522,94050892,94055279	0.866667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	117168885	117168914	117168885	+	RAMPAGE_only	1	1	8	0.307321	2.521641	chr11	117168787	117169090	SINE|Alu|AluSq2	-	chr11	117144283	117171045	PAFAH1B2|NM_001309431.1	+	117144283,117159933,117161144,117163769,117167420	117144418,117160023,117161261,117163892,117171045	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	59651207	59651256	59651214	+	RAMPAGE_only	5	5	38	1.459774	4.628108	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59647645	59695112	MSTRG.11905.8	+	59647645,59648239,59651202,59655853,59660390,59661442,59663841,59664786,59666102,59666479,59666796,59668776,59673646,59674700,59676953,59679396,59680911,59681294,59681646,59682270,59682628,59682906,59683094,59683386,59683624,59683874,59685055,59685586,59687000,59690635,59693727	59647666,59648401,59651316,59656027,59660588,59661643,59663994,59664909,59666240,59666644,59666977,59668940,59673772,59674843,59677188,59679519,59681057,59681478,59681839,59682428,59682793,59683014,59683262,59683536,59683756,59683985,59685226,59685808,59687021,59690711,59695112	0.921053
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	122074111	122074156	122074155	-	RAMPAGE_only	8	10	21	0.806717	3.787144	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065943	122076083	LOX|ENST00000505593.5	-	122065943,122070052,122070493,122074012,122075403,122076017	122066749,122070168,122070589,122074169,122075541,122076083	0.904762
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	45184517	45184550	45184517	+	RAMPAGE_only	3	3	8	0.307321	3.000000	chr21	45184448	45184750	SINE|Alu|AluJb	-	chr21	45171641	45226560	ADARB1|ENST00000360697.4	+	45171641,45175729,45180329,45182584,45183361,45184473,45184922,45204554,45220835,45222017	45171684,45176664,45180444,45182753,45183510,45184593,45185091,45204736,45221014,45226560	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	157122999	157123007	157123006	-	High_confidence	3	3	8	0.307321	2.807355	chr3	157122796	157123135	LTR|ERVL-MaLR|MLT1A1	-	chr3	157081666	157123004	LINC00880|ENST00000471357.1	-	157081666,157101934,157103357,157122875	157083275,157102092,157103479,157123004	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	156418568	156418589	156418570	-	RAMPAGE_only	5	8	20	0.768302	3.684184	chr1	156418390	156418698	SINE|Alu|AluSc	+	chr1	156404249	156417439	C1orf61|ENST00000608007.1	-	156404249,156414653	156404601,156417439	0.950000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	180684912	180684952	180684951	-	RAMPAGE_only	3	3	16	0.614642	3.640224	chr3	180684657	180685442	LTR|ERVL|LTR41	+	chr3	180614587	180679500	CCDC39|ENST00000442201.6	-	180614587,180616280,180616515,180616825,180619258,180619810,180631468,180641992,180644119,180647078,180648164,180651400,180652162,180654761,180659451,180659676,180660569,180661860,180663866,180679290	180615077,180616363,180616695,180616966,180619365,180619970,180631592,180642201,180644257,180647243,180648359,180651533,180652266,180654953,180659580,180659769,180660728,180662007,180663986,180679500	0.687500
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	86453184	86453232	86453231	-	High_confidence	16	16	112	4.302492	5.525498	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016153	86453225	MAPK10|ENST00000639972.2	-	86016153,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194308,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453225	0.830357
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	73713243	73713309	73713284	-	RAMPAGE_only	5	6	24	0.921963	4.142915	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	0.958333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	50756903	50756908	50756903	-	RAMPAGE_only	2	2	8	0.307321	3.000000	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	26956523	26956545	26956544	-	High_confidence	5	5	14	0.537812	3.392747	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.785714
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	153872174	153872207	153872174	+	High_confidence	5	10	29	1.114038	4.310443	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871952	154450694	MSTRG.15464.2	+	153871952,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872176,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154450694	0.827586
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	51810482	51810488	51810487	+	RAMPAGE_only	5	9	14	0.537812	3.182006	chr15	51810180	51810595	DNA|hAT-Blackjack|MER63B	+	chr15	51751560	51816368	TMOD2|ENST00000249700.8	+	51751560,51766372,51768261,51773711,51776931,51781043,51782720,51798196,51806376,51808419	51751712,51766567,51768418,51773834,51777018,51781174,51782828,51798340,51806521,51816368	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	21324720	21324762	21324735	-	High_confidence	23	23	123	4.725058	6.085176	chr12	21323599	21325951	LTR|ERV1|MER4B-int	-	chr12	21274902	21324736	SLCO1A2|ENST00000463718.5	-	21274902,21292163,21293944,21295596,21297403,21300347,21301170,21304426,21306881,21314548,21318781,21319371,21324593	21275424,21292336,21294110,21295792,21297568,21300569,21301269,21304573,21306988,21314681,21318923,21319579,21324736	0.910569
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	17282797	17282824	17282821	+	RAMPAGE_only	3	3	17	0.653057	3.852169	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.764706
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	16011396	16011402	16011396	+	High_confidence	6	6	11	0.422566	3.277613	chr21	16010777	16011575	LTR|ERVL-MaLR|MLT1I-int	+	chr21	16011389	16607130	MSTRG.16963.2	+	16011389,16071113,16181590,16231055,16391613,16487489,16606993	16011740,16071398,16181687,16231115,16391685,16487538,16607130	0.818182
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	110728253	110728262	110728253	+	High_confidence	3	3	12	0.460981	3.418296	chr9	110728186	110728327	DNA|DNA|UCON78	+	chr9	110728272	110768018	MUSK|ENST00000634612.1	+	110728272,110728690,110734250,110747640,110762201,110767819	110728295,110728717,110734375,110747800,110762208,110768018	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	62897430	62897431	62897430	+	High_confidence	14	15	17	0.653057	3.875000	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.529412
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	76781607	76781638	76781637	+	RAMPAGE_only	3	3	6	0.230491	2.584963	chr12	76781376	76781761	LTR|ERVL-MaLR|MSTD	+	chr12	76797518	76822490	ZDHHC17|ENST00000549944.1	+	76797518,76805316,76809042,76809712,76813312,76815145,76815856,76822405	76797537,76805439,76809120,76809857,76813449,76815210,76816019,76822490	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	149218517	149218641	149218640	+	High_confidence	97	157	646	24.816160	7.446430	chr6	149218600	149218675	SINE|MIR|MIR3	-	chr6	149218697	149244072	AL031056.1|ENST00000445901.1	+	149218697,149243728	149218776,149244072	0.609907
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	73837439	73837450	73837439	-	RAMPAGE_only	6	6	17	0.653057	2.631293	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	130017188	130017194	130017188	-	High_confidence	13	13	24	0.921963	4.418296	chr8	130017097	130017284	LINE|L2|L2a	-	chr8	129862249	130017129	FAM49B|ENST00000523993.5	-	129862249,129871374,129879388,129903311,129904498,129970942,130017017	129862334,129871496,129879471,129903350,129904585,129970995,130017129	0.541667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	8788252	8788253	8788252	+	High_confidence	27	27	28	1.075623	4.106377	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.964286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	67884992	67884996	67884995	+	RAMPAGE_only	5	5	10	0.384151	2.725481	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.600000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	25026852	25026892	25026852	+	RAMPAGE_only	19	23	45	1.728680	4.632965	chr15	25026790	25027276	LINE|L2|L2	-	chr15	25000313	25036490	MSTRG.8531.30	+	25000313,25001357,25002724,25019026,25019827,25020589	25000374,25002030,25002888,25019148,25019869,25036490	0.977778
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	68882874	68882956	68882874	-	High_confidence	5	5	40	1.536604	4.462815	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.950000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	129488726	129488857	129488849	+	High_confidence	15	16	112	4.302492	5.176778	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.964286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	51815113	51815542	51815125	+	RAMPAGE_only	22	24	338	12.984306	6.338277	chr15	51814979	51815278	SINE|Alu|AluSq2	+	chr15	51751560	51816368	TMOD2|ENST00000249700.8	+	51751560,51766372,51768261,51773711,51776931,51781043,51782720,51798196,51806376,51808419	51751712,51766567,51768418,51773834,51777018,51781174,51782828,51798340,51806521,51816368	0.994083
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	45450734	45450766	45450765	-	High_confidence	4	4	15	0.576227	3.506891	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.800000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	18149844	18149869	18149868	+	High_confidence	5	5	22	0.845132	3.663533	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	130428509	130428553	130428523	-	High_confidence	31	31	159	6.108002	5.729096	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046259.1	-	130416749,130419070,130425090,130425913,130427703	130418298,130419245,130425158,130426038,130428546	0.987421
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	102450356	102450360	102450359	-	High_confidence	3	3	7	0.268906	2.521641	chr11	102450237	102450387	LTR|ERVL-MaLR|MLT1K	+	chr11	102398855	102451231	TMEM123|ENST00000528969.5	-	102398855,102401538,102401915,102448811,102451201	102398891,102401692,102402206,102448868,102451231	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	110330091	110330111	110330110	-	RAMPAGE_only	3	3	8	0.307321	2.807355	chr6	110329832	110331376	LINE|L1|L1MD2	+	chr6	110245927	110358272	METTL24|ENST00000338882.4	-	110245927,110298921,110315341,110322773,110357954	110246260,110299150,110315481,110322872,110358272	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	51403418	51403433	51403432	-	RAMPAGE_only	7	7	13	0.499396	2.661226	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	62864750	62864766	62864765	-	High_confidence	3	4	6	0.230491	2.584963	chr9	62864712	62865033	LTR|ERV1|LTR8	+	chr9	62861381	62864957	ADGRF5P1|ENST00000590130.1	-	62861381,62864789	62862193,62864957	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	26832691	26832892	26832797	-	High_confidence	4	6	72	2.765888	4.969875	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26716161	26832786	ITPR2|ENST00000545235.1	-	26716161,26722396,26724655,26725649,26832689	26716242,26722555,26724742,26725765,26832786	0.916667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	201171618	201171634	201171632	-	High_confidence	3	6	10	0.384151	2.725481	chr1	201171602	201171730	SINE|MIR|MIRc	+	chr1	201134770	201171582	TMEM9|NM_001288564.1	-	201134770,201143819,201146739,201151760,201153857,201171489	201135815,201143951,201146848,201151852,201153959,201171582	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	42404759	42404806	42404759	+	High_confidence	245	263	974	37.416315	7.403335	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404778	42412317	CAPN3|ENST00000356316.7	+	42404778,42409293,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404964,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412317	0.849076
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	16712869	16712933	16712889	-	High_confidence	21	22	131	5.032379	6.132857	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.931298
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	48492783	48492791	48492783	-	High_confidence	3	3	8	0.307321	2.500000	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	34588445	34588451	34588450	-	High_confidence	12	18	25	0.960378	4.183465	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.880000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	57451517	57451532	57451517	+	RAMPAGE_only	2	2	9	0.345736	2.503258	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	50757120	50757134	50757120	+	High_confidence	4	4	11	0.422566	3.277613	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.636364
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	24974809	24974824	24974823	+	RAMPAGE_only	3	3	7	0.268906	2.584963	chr15	24974618	24974863	SINE|Alu|AluSx	-	chr15	24955004	24978548	SNRPN|ENST00000577565.1	+	24955004,24962113,24967931,24974287,24975357,24976304,24976876,24977777,24978192,24978406	24955062,24962209,24968082,24974456,24975509,24976416,24977029,24977916,24978318,24978548	0.714286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	123390704	123390732	123390725	+	High_confidence	3	3	9	0.345736	3.000000	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	102449836	102449877	102449836	+	High_confidence	7	7	35	1.344529	4.422001	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.914286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	8436023	8436026	8436025	-	RAMPAGE_only	6	11	11	0.422566	2.663533	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.727273
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	147131952	147131986	147131985	-	RAMPAGE_only	34	35	97	3.726265	6.045537	chr6	147131896	147132081	DNA|DNA|UCON78	+	chr6	146842565	147204540	STXBP5-AS1|ENST00000427394.5	-	146842565,146844318,146850824,146860617,146972044,147001440,147074804,147119416,147173592,147173814,147204412	146842809,146844712,146851331,146860743,146972070,147001543,147074847,147119477,147173647,147173948,147204540	0.639175
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	3062917	3062939	3062922	-	High_confidence	17	20	55	2.112831	4.520861	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.963636
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	30971705	30971758	30971705	+	High_confidence	6	6	20	0.768302	3.932138	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	52236294	52236354	52236325	-	RAMPAGE_only	7	7	26	0.998793	4.083856	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.653846
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	50443311	50443319	50443318	-	High_confidence	10	10	31	1.190868	4.607264	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.580645
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	61517316	61517354	61517316	+	RAMPAGE_only	1	1	6	0.230491	2.584963	chr4	61517137	61518029	DNA|hAT-Charlie|Charlie17b	+	chr4	61497293	62071127	ADGRL3|ENST00000506746.5	+	61497293,61517314,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61517518,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	19386313	19386346	19386334	-	High_confidence	5	7	18	0.691472	3.725481	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	69886283	69886291	69886290	+	High_confidence	6	7	10	0.384151	3.169925	chr9	69885902	69886640	DNA|TcMar-Tigger|MER44C	+	chr9	69886149	69906199	MSTRG.26300.8	+	69886149,69886837,69905953	69886373,69886895,69906199	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	94234040	94234073	94234040	+	RAMPAGE_only	3	3	9	0.345736	3.000000	chr4	94234038	94234182	SINE|MIR|MIR3	-	chr4	94208083	94289899	SMARCAD1|ENST00000394961.6	+	94208083,94208345,94213034,94226118,94233953,94236951,94240905,94249653,94250751,94252615,94264706,94270727,94273616,94274737,94274889,94276338,94277021,94278421,94278615,94278922,94280591,94281471,94283120,94284959,94289472	94208242,94208584,94213152,94226296,94234122,94237018,94241006,94249755,94250833,94253007,94264906,94270818,94273716,94274797,94274965,94276474,94277159,94278517,94278733,94279050,94280780,94281590,94283303,94285069,94289899	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	6200877	6200878	6200877	-	High_confidence	5	5	8	0.307321	2.500000	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	3195772	3195783	3195772	-	High_confidence	16	17	26	0.998793	4.074876	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	119179238	119179297	119179296	+	High_confidence	8	8	22	0.845132	3.663533	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.863636
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	65382641	65382663	65382645	-	High_confidence	5	5	15	0.576227	3.378783	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65379452	65382645	SLC25A45|ENST00000529962.5	-	65379452,65379866,65380131,65380533,65381874,65382485	65379561,65379938,65380175,65380622,65381969,65382645	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	27331593	27331639	27331611	+	High_confidence	4	7	35	1.344529	4.366681	chr22	27331341	27331854	LTR|ERVL|LTR33	-	chr22	27331786	27379265	AL020994.2|ENST00000413244.1	+	27331786,27335157,27336096,27379185	27331938,27335330,27336262,27379265	0.942857
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	27613330	27613358	27613338	+	High_confidence	7	10	30	1.152453	4.415061	chr14	27612881	27613894	LTR|ERV1|MER4B-int	+	chr14	27612610	27639636	LINC00645|ENST00000557399.1	+	27612610,27613420,27619822,27634243,27636419	27612677,27613496,27619873,27634344,27639636	0.733333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	76445409	76445410	76445409	-	High_confidence	24	24	24	0.921963	3.303509	chr2	76445391	76445484	LTR|ERV1|MER66B	+	chr2	76445078	76445410	RN7SKP203|ENST00000363618.1	-	76445078	76445410	0.958333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	119046591	119046605	119046604	-	RAMPAGE_only	5	6	13	0.499396	2.855389	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.923077
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	24211883	24211895	24211883	-	High_confidence	2	2	6	0.230491	2.584963	chr14	24211871	24212083	SINE|MIR|MIR	-	chr14	24210664	24212109	CHMP4A|ENST00000552620.1	-	24210664,24211410,24211679	24210768,24211592,24212109	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	43027196	43027214	43027196	+	RAMPAGE_only	2	2	9	0.345736	2.500000	chr17	43027173	43027300	LINE|CR1|X6A_LINE	-	chr17	43025240	43032041	RND2|NM_005440.4	+	43025240,43025959,43027182,43028060,43028431	43025449,43026047,43027292,43028195,43032041	0.777778
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	85378112	85378113	85378112	-	High_confidence	30	31	34	1.306114	3.884859	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.911765
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	9108366	9108459	9108366	+	RAMPAGE_only	3	3	29	1.114038	3.967720	chr16	9108350	9108485	SINE|Alu|AluJo	-	chr16	9104847	9113181	AC087190.3|ENST00000574616.2	+	9104847	9113181	0.965517
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	147173173	147173250	147173225	+	High_confidence	9	11	70	2.689058	5.255931	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.828571
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	43508400	43508470	43508400	+	RAMPAGE_only	5	5	23	0.883547	4.011365	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	0.913043
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	235128137	235128201	235128137	-	High_confidence	4	4	22	0.845132	3.447402	chr1	235127941	235128184	SINE|Alu|AluSx	+	chr1	235127802	235127937	SNORA14B|NR_002956.1	-	235127802	235127937	0.772727
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	175874979	175875000	175874979	+	RAMPAGE_only	4	4	9	0.345736	2.500000	chr5	175874579	175875409	LINE|L2|L2b	-	chr5	175872809	175879873	CPLX2|ENST00000502265.5	+	175872809,175878651,175878907,175879847	175873020,175878770,175879083,175879873	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	6807005	6807051	6807017	+	RAMPAGE_only	6	7	39	1.498189	4.184693	chr1	6806941	6807209	LINE|L2|L2b	-	chr1	6785551	6887787	CAMTA1|ENST00000461311.1	+	6785551,6820180,6825091,6871756,6887653	6785575,6820250,6825210,6871840,6887787	0.512821
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	40107234	40107235	40107234	-	RAMPAGE_only	16	16	23	0.883547	3.606937	chr2	40107195	40107304	SINE|Alu|AluYa8	+	chr2	40097269	40452069	SLC8A1|ENST00000406785.6	-	40097269,40139400,40160764,40164853,40174824,40177751,40428472,40451903	40115629,40139676,40160864,40164984,40174842,40177855,40430304,40452069	0.956522
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	94070559	94070602	94070559	-	High_confidence	23	35	66	2.535397	5.072124	chr15	94070430	94070669	SINE|5S-Deu-L2|AmnSINE1	-	chr15	94064368	94070820	LINC01579|ENST00000555772.1	-	94064368,94066768,94070523	94065292,94066879,94070820	0.787879
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	238486001	238486035	238486034	-	High_confidence	36	49	192	7.375701	5.803274	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.682292
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	183096439	183096442	183096439	+	RAMPAGE_only	5	6	10	0.384151	2.646439	chr2	183096224	183096535	SINE|Alu|AluSq2	-	chr2	183078758	183100005	DUSP19|ENST00000354221.4	+	183078758,183083507,183087039,183095430	183079159,183083554,183087192,183100005	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	50785201	50785258	50785226	+	RAMPAGE_only	4	4	30	1.152453	3.764735	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.933333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	67387423	67387437	67387423	-	RAMPAGE_only	2	2	8	0.307321	2.521641	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	26366333	26366391	26366390	+	RAMPAGE_only	4	4	30	1.152453	4.142295	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	103129663	103129698	103129663	+	High_confidence	2	2	13	0.499396	3.180833	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	61812161	61812180	61812161	+	High_confidence	5	5	9	0.345736	2.947703	chr14	61812067	61812179	LINE|L2|L2a	-	chr14	61812720	62112550	MSTRG.7919.3	+	61812720,61885076,61970131,61995875,62069602,62075134,62080833,62084195,62100393	61812810,61885249,61970311,61996542,62069815,62075391,62081274,62084385,62112550	0.555556
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	133089611	133089678	133089677	+	RAMPAGE_only	18	24	101	3.879926	5.742335	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.960396
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	6952984	6952985	6952984	-	RAMPAGE_only	5	7	7	0.268906	2.521641	chr8	6952819	6952939	LTR|ERVL|MER54B	-	chr8	6950725	6951599	DEFA8P|ENST00000457582.1	-	6950725,6951427	6950838,6951599	0.714286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	81623082	81623083	81623082	-	High_confidence	12	12	12	0.460981	2.855389	chr14	81622661	81624332	LTR|ERV1|LTR12C	-	chr14	81605346	81623061	LINC01467|NR_110074.1	-	81605346,81607131,81622652	81605554,81607701,81623061	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	152412488	152412498	152412488	-	High_confidence	3	3	10	0.384151	2.725481	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	78245687	78245688	78245687	-	High_confidence	552	552	559	21.474045	5.516620	chr15	78245271	78246702	LTR|ERV1|LTR12C	-	chr15	78194647	78245688	ACSBG1|ENST00000558828.5	-	78194647,78208001,78245268	78194726,78208102,78245688	0.928444
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	48868595	48868614	48868595	-	High_confidence	3714	3850	9924	381.231531	7.876837	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.989621
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	53546437	53546475	53546461	-	RAMPAGE_only	2	2	9	0.345736	2.750000	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	29420495	29420528	29420495	+	RAMPAGE_only	2	2	10	0.384151	3.321928	chr10	29420498	29420628	LINE|L1|L1MA6	+	chr10	29409571	29422372	SVIL-AS1|ENST00000427063.6	+	29409571,29415356,29420490	29409658,29415412,29422372	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	45378510	45378511	45378510	+	High_confidence	5	5	7	0.268906	2.521641	chr13	45378076	45378674	LTR|ERV1|HERVE-int	-	chr13	45378529	45390879	TPT1-AS1|ENST00000520585.5	+	45378529,45379194,45379898,45383090,45383759,45389734,45390757	45378671,45379335,45380001,45383235,45383838,45389820,45390879	0.714286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	16102289	16102654	16102289	+	RAMPAGE_only	42	49	723	27.774123	5.514625	chr19	16102068	16102357	SINE|Alu|AluSz	+	chr19	16088710	16102946	TPM4|ENST00000591645.2	+	16088710,16089044,16093535,16093683,16101263	16088849,16089120,16093598,16093753,16102946	0.984786
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	12635945	12635949	12635948	+	RAMPAGE_only	3	5	9	0.345736	2.641604	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	43557730	43557759	43557758	-	High_confidence	8	9	18	0.691472	3.616875	chr5	43557737	43557841	DNA|hAT-Charlie|MER33	-	chr5	43547727	43557758	PAIP1|ENST00000515338.1	-	43547727,43555829,43557350	43547913,43555961,43557758	0.722222
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	32075879	32075899	32075879	+	High_confidence	3	4	10	0.384151	3.121928	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32075686	32157216	MSTRG.7647.1	+	32075686,32090501,32117142,32146262,32149901,32152422,32154620	32076657,32094386,32117287,32146340,32150033,32152528,32157216	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	86482577	86482578	86482577	+	RAMPAGE_only	13	13	15	0.576227	3.773557	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.800000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	86453261	86453315	86453283	-	High_confidence	2	2	10	0.384151	2.725481	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86194393	86453278	MAPK10|ENST00000638867.2	-	86194393,86354529,86392313,86399746,86453029	86194407,86354644,86392432,86399806,86453278	0.700000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	103274363	103274367	103274363	-	RAMPAGE_only	6	6	11	0.422566	3.277613	chr7	103274079	103275487	LTR|ERV1|LTR12C	-	chr7	103175132	103280219	DPY19L2P2|ENST00000439473.5	-	103175132,103184001,103185437,103195439,103197186,103198594,103210266,103212160,103214000,103216462,103225104,103233799,103234648,103237755,103238802,103240561,103242988,103254781,103257603,103271731,103274069,103277613,103279832	103175411,103184127,103185537,103195614,103197306,103198619,103210313,103212232,103214102,103216543,103225164,103233886,103234726,103237855,103238871,103240653,103243046,103254875,103257724,103271869,103275627,103277638,103280219	0.636364
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	139131921	139131928	139131927	-	RAMPAGE_only	9	9	16	0.614642	3.323231	chr7	139131920	139132647	LTR|ERV1|ERV24B_Prim-int	+	chr7	139043519	139109719	ZC3HAV1|NM_020119.3	-	139043519,139053450,139053964,139055204,139061035,139064878,139073855,139076285,139078551,139079469,139083779,139089623,139109023	139047853,139053581,139054095,139055295,139061138,139064999,139074030,139076409,139078653,139080243,139084032,139089759,139109719	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	97386576	97386593	97386592	+	RAMPAGE_only	6	6	15	0.576227	3.906891	chr12	97386495	97386655	SINE|MIR|MIRc	+	chr12	97431652	97565015	RMST|ENST00000538559.6	+	97431652,97460714,97461971,97462663,97463151,97492460,97493176,97493874,97494694,97530654,97560536,97560796,97564149,97564737	97431934,97460863,97462146,97462872,97463289,97492606,97493285,97494002,97494881,97530859,97560698,97561047,97564328,97565015	0.733333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	23951339	23951361	23951339	+	High_confidence	1	1	10	0.384151	3.169925	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	124605274	124605321	124605274	+	High_confidence	9	13	36	1.382944	4.569008	chr10	124605271	124605664	LINE|L2|L2b	-	chr10	124605199	124613425	LHPP|ENST00000486535.1	+	124605199,124613263	124605515,124613425	0.777778
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	75626304	75626305	75626304	-	High_confidence	14	15	21	0.806717	3.260828	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.904762
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	36481313	36481335	36481328	-	High_confidence	3	3	13	0.499396	3.392747	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.769231
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	3795750	3795789	3795780	+	High_confidence	16	16	137	5.262870	5.625181	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	137345811	137345832	137345811	-	High_confidence	4	4	14	0.537812	3.392747	chr7	137345640	137346278	LTR|ERV1|MER41B	-	chr7	137227340	137345815	MSTRG.24500.1	-	137227340,137251229,137253463,137254858,137343438,137345065,137345646	137228075,137251391,137253637,137254974,137343699,137345130,137345815	0.714286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	92104106	92104107	92104106	+	RAMPAGE_only	13	16	19	0.729887	4.169925	chr13	92103672	92104445	LINE|L1|L1M4	-	chr13	91398618	92867237	GPC5|NM_004466.5	+	91398618,91448760,91693186,91728531,91756294,91907936,92144829,92866281	91399209,91448922,91693881,91728665,91756420,91908057,92144989,92867237	0.789474
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	114433510	114433511	114433510	+	High_confidence	78	78	82	3.150039	5.081384	chr5	114432499	114433929	LTR|ERV1|LTR12C	+	chr5	114433529	114496500	KCNN2|NR_103458.1	+	114433529,114463048,114473053,114486697,114487049,114493402,114495894	114433929,114463190,114473164,114486803,114487177,114493472,114496500	0.890244
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	64439294	64439315	64439294	+	RAMPAGE_only	4	4	8	0.307321	2.750000	chr12	64439324	64439679	DNA|hAT-Charlie|Charlie4a	+	chr12	64404372	64448684	XPOT|NM_007235.4	+	64404372,64409961,64414906,64416697,64418045,64418875,64420069,64420352,64421234,64423004,64423181,64424598,64425037,64425337,64425814,64428050,64430048,64431537,64433413,64434506,64434793,64435626,64439243,64445074,64448104	64404804,64410095,64414989,64416754,64418115,64419094,64420254,64420521,64421471,64423043,64423244,64424723,64425182,64425457,64425909,64428120,64430287,64431823,64433603,64434623,64434909,64435674,64439315,64445131,64448684	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	137268177	137268178	137268177	-	High_confidence	11	12	15	0.576227	3.324863	chr7	137267941	137268351	LTR|ERV1|HERVE_a-int	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.933333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	159428318	159428357	159428356	-	RAMPAGE_only	10	10	28	1.075623	4.450212	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.571429
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	31117747	31117758	31117757	-	High_confidence	9	9	15	0.576227	3.039149	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.933333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	197235236	197235253	197235252	-	RAMPAGE_only	3	3	8	0.307321	2.500000	chr3	197234967	197235950	LINE|L1|L1MEc	+	chr3	197140144	197260461	DLG1|ENST00000453607.5	-	197140144,197142717,197194424,197260258	197140264,197142768,197194589,197260461	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	28090338	28090349	28090338	+	High_confidence	3	5	9	0.345736	2.725481	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	29209023	29209024	29209023	+	RAMPAGE_only	16	16	22	0.845132	3.499228	chr12	29208990	29209077	LINE|L2|L2	-	chr12	29223622	29335616	FAR2|NM_018099.4	+	29223622,29270411,29293299,29297020,29307657,29309185,29311027,29311882,29316840,29321794,29332599,29333631	29223894,29270638,29293475,29297200,29307835,29309230,29311146,29311950,29317012,29321924,29332727,29335616	0.681818
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	39865039	39865072	39865071	+	RAMPAGE_only	3	4	7	0.268906	2.521641	chr6	39865016	39865115	DNA|TcMar-Tigger|Tigger19b	-	chr6	39867312	39868879	DAAM2|ENST00000632657.1	+	39867312	39868879	0.714286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	68413622	68413649	68413622	+	High_confidence	4	4	11	0.422566	3.095795	chr17	68408123	68414142	LINE|L1|L1PA3	-	chr17	68413622	68524949	AC007780.1|ENST00000590353.1	+	68413622,68515393,68522755,68523724,68524015,68524911	68413795,68515576,68522926,68523816,68524077,68524949	0.636364
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	73674678	73674679	73674678	+	RAMPAGE_only	4	4	6	0.230491	2.584963	chr1	73674683	73674796	LINE|L2|L2a	+	chr1	73635215	73709581	LINC02238|ENST00000424953.1	+	73635215,73699750,73709143	73635241,73699843,73709581	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	217842161	217842185	217842179	-	High_confidence	5	5	25	0.960378	4.105389	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.840000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	50226714	50226747	50226725	+	High_confidence	6	9	34	1.306114	4.020855	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	1655395	1655411	1655410	-	RAMPAGE_only	5	8	16	0.614642	3.640224	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	69495121	69495148	69495121	+	High_confidence	4	4	8	0.307321	2.750000	chr10	69494989	69495143	SINE|MIR|MIR3	+	chr10	69495134	69506995	TSPAN15|ENST00000459981.1	+	69495134,69495593,69498279,69504437,69506123,69506828	69495423,69495689,69498396,69504485,69506240,69506995	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	5680196	5680249	5680240	-	High_confidence	13	13	90	3.457360	5.182152	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.944444
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	35164211	35164245	35164235	+	High_confidence	6	7	32	1.229283	3.038409	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	643627	643636	643635	-	High_confidence	37	37	86	3.303699	4.782863	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.965116
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	2838253	2838261	2838260	+	RAMPAGE_only	4	8	14	0.537812	3.085055	chr4	2838108	2838543	LINE|L1|L1ME3B	-	chr4	2843856	2930076	ADD1|NM_176801.2	+	2843856,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763,2907742,2908514,2914883,2926013,2926641,2928170	2844024,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905108,2907844,2908604,2915040,2926112,2926675,2930076	0.928571
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	125497354	125497355	125497354	-	RAMPAGE_only	4	4	6	0.230491	2.584963	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	60277563	60277565	60277563	-	RAMPAGE_only	6	12	15	0.576227	3.182006	chr3	60277246	60277886	LTR|ERV1|LTR9D	+	chr3	59747277	60081127	FHIT|NM_001320901.1	-	59747277,59922345,60011370,60014006,60014205,60070858,60080790	59752321,59922414,60011400,60014075,60014264,60070939,60081127	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100831503	100831531	100831522	+	High_confidence	2	2	8	0.307321	2.750000	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100831480	100861026	MEG3|ENST00000555928.5	+	100831480,100834631,100836166,100845457,100860690	100831534,100834751,100836300,100845533,100861026	0.625000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	163423188	163423230	163423206	+	High_confidence	4	4	22	0.845132	4.121928	chr6	163423016	163423301	SINE|Alu|AluSx4	+	chr6	163423207	163478802	QKI|ENST00000537124.5	+	163423207,163455278,163478779	163423592,163455421,163478802	0.545455
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	49657346	49657356	49657355	-	High_confidence	4	5	10	0.384151	2.725481	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.800000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	44829290	44829349	44829348	-	RAMPAGE_only	10	12	38	1.459774	4.152937	chr7	44829318	44829620	SINE|Alu|AluSq2	+	chr7	44826790	44848077	H2AFV|ENST00000222690.10	-	44826790,44835528,44840898,44843276,44847968	44830163,44835658,44841012,44843354,44848077	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	87524622	87524705	87524700	-	RAMPAGE_only	6	7	37	1.421359	4.627987	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87494416	87528619	SPARCL1|ENST00000535835.5	-	87494416,87494980,87499520,87504821,87528554	87494598,87495127,87499585,87504923,87528619	0.567568
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	3536476	3536516	3536476	-	High_confidence	3	3	11	0.422566	3.095795	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.818182
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	62376790	62376801	62376790	-	High_confidence	7	7	13	0.499396	2.968919	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.923077
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	77710887	77710889	77710888	+	High_confidence	10	17	19	0.729887	2.563717	chr14	77710914	77711213	LINE|L1|L1MA1	+	chr14	77710643	77717584	SLIRP|ENST00000556956.1	+	77710643,77715771,77717495	77710896,77715879,77717584	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	92914960	92914974	92914973	+	High_confidence	6	6	18	0.691472	3.725481	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.944444
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	16011587	16011692	16011674	+	High_confidence	7	7	45	1.728680	4.730416	chr21	16011644	16011787	LTR|ERVL-MaLR|MLT1I-int	+	chr21	16011389	16607130	MSTRG.16963.2	+	16011389,16071113,16181590,16231055,16391613,16487489,16606993	16011740,16071398,16181687,16231115,16391685,16487538,16607130	0.511111
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	97188708	97188715	97188710	-	RAMPAGE_only	10	17	31	1.190868	4.228165	chr9	97188625	97188759	LTR|ERVL-MaLR|MLT1L	+	chr9	97168159	97199511	MSTRG.26505.2	-	97168159,97172947,97178263,97179447,97185441,97188464,97191730,97194702	97170736,97173060,97178413,97180916,97185512,97188599,97191798,97199511	0.935484
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	20479418	20479481	20479418	+	RAMPAGE_only	5	5	32	1.229283	3.211000	chr6	20479290	20479502	LINE|L2|L2c	-	chr6	20403678	20493714	E2F3|ENST00000535432.2	+	20403678,20479845,20481223,20482761,20486688,20488112,20490167	20403832,20479957,20481425,20482920,20486803,20488248,20493714	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	47486756	47486773	47486756	-	High_confidence	3	3	9	0.345736	2.500000	chr11	47486415	47486707	SINE|Alu|AluSz6	-	chr11	47477295	47486799	CELF1|ENST00000422993.2	-	47477295,47478876,47482694,47484388,47486749	47477425,47478952,47482856,47484523,47486799	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	53523963	53523977	53523963	-	High_confidence	9	10	22	0.845132	3.913977	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	93183273	93183294	93183293	-	RAMPAGE_only	3	3	10	0.384151	3.169925	chr14	93183223	93184271	LTR|Gypsy|MamGyp-int	-	chr14	93182195	93184904	MOAP1|NM_022151.4	-	93182195,93184558,93184809	93184362,93184713,93184904	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	57487060	57487078	57487060	+	RAMPAGE_only	12	12	37	1.421359	4.416608	chr17	57486852	57487083	LINE|L2|L2c	-	chr17	57440689	57675059	MSI2|ENST00000579505.5	+	57440689,57529675,57596867,57615969,57627228,57652098,57674917	57440739,57529724,57596950,57616084,57627303,57652161,57675059	0.594595
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	98943575	98943578	98943575	+	High_confidence	7	11	27	1.037208	3.973661	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.925926
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	77169312	77169322	77169312	-	High_confidence	4	4	9	0.345736	2.500000	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77092201	77169319	PIGK|ENST00000487906.5	-	77092201,77122274,77154448,77161294,77161593,77163845,77169259	77092490,77122359,77154621,77161405,77161711,77163942,77169319	0.777778
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	76942658	76942681	76942680	-	RAMPAGE_only	4	4	17	0.653057	3.175123	chr4	76942536	76942791	LTR|ERVL-MaLR|MLT1J	+	chr4	76939433	76949642	MSTRG.19854.1	-	76939433	76949642	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	113873387	113873388	113873387	-	High_confidence	11	11	14	0.537812	3.392747	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873351	LINC01268|ENST00000434296.2	-	113868012,113870668,113872993	113870343,113870734,113873351	0.714286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	47795013	47795118	47795013	-	High_confidence	8	10	55	2.112831	4.958960	chr14	47794965	47800647	LINE|L1|L1PA2	+	chr14	47764952	47795014	LINC00648|NR_039996.1	-	47764952,47789905,47794971	47767757,47789943,47795014	0.581818
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	159005961	159005962	159005961	+	High_confidence	10	10	12	0.460981	3.095795	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	31586978	31586979	31586978	+	High_confidence	15	15	18	0.691472	3.263933	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	33818334	33818395	33818374	+	High_confidence	5	5	30	1.152453	4.349192	chr13	33818361	33818761	LINE|L2|L2a	-	chr13	33818068	33837507	RFC3|NM_002915.3	+	33818068,33821131,33823916,33825788,33829835,33830718,33831255,33835147,33836103	33818265,33821269,33823984,33825886,33830017,33830855,33831354,33835217,33837507	0.933333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	10854170	10854242	10854188	-	RAMPAGE_only	7	8	19	0.729887	3.787144	chr11	10852862	10854628	DNA|hAT-Charlie|Charlie14a	-	chr11	10852863	10858036	ZBED5|ENST00000413761.6	-	10852863,10856143,10857861	10855086,10856257,10858036	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	64990015	64990026	64990025	-	RAMPAGE_only	3	3	9	0.345736	2.750000	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	44305175	44305186	44305175	+	High_confidence	5	5	14	0.537812	3.182006	chr21	44305083	44305240	SINE|MIR|MIRc	+	chr21	44305193	44313954	PFKL|ENST00000491298.1	+	44305193,44306680,44311005,44312104,44312977,44313637,44313912	44305417,44306754,44311083,44312294,44313143,44313682,44313954	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	88611735	88611778	88611735	-	High_confidence	14	15	53	2.036001	5.209867	chr5	88611584	88611790	LINE|L1|L1MDa	+	chr5	88540510	88611776	LINC00461|ENST00000506664.5	-	88540510,88542034,88611663	88541123,88542070,88611776	0.528302
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	217566	217567	217566	+	High_confidence	6	6	9	0.345736	2.947703	chr3	217318	217820	LINE|L2|L2a	-	chr3	217534	328223	CHL1|ENST00000449294.6	+	217534,244612,319682,325958,328166	217700,244692,319867,326064,328223	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	232816731	232816752	232816731	+	RAMPAGE_only	3	4	11	0.422566	3.321928	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	27331684	27331705	27331684	+	High_confidence	3	4	13	0.499396	3.392747	chr22	27331341	27331854	LTR|ERVL|LTR33	-	chr22	27331786	27379265	AL020994.2|ENST00000413244.1	+	27331786,27335157,27336096,27379185	27331938,27335330,27336262,27379265	0.692308
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	23384735	23384776	23384775	-	High_confidence	5	5	16	0.614642	3.875000	chr21	23384605	23385150	LTR|ERVL|MLT2B3	-	chr21	23361103	23384835	D21S2088E|NR_040254.1	-	23361103,23364037,23372326,23372947,23384687	23362239,23364193,23372448,23373084,23384835	0.687500
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	193656715	193656744	193656716	+	High_confidence	17	20	31	1.190868	4.548394	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193656752	193697526	MSTRG.19325.30	+	193656752,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193656903,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193697526	0.967742
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	89889016	89889029	89889028	+	RAMPAGE_only	9	9	17	0.653057	3.499228	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.588235
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	5726324	5726325	5726324	-	High_confidence	87	88	99	3.803096	5.253045	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.676768
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	40772059	40772060	40772059	+	RAMPAGE_only	147	147	147	5.647021	4.224413	chr19	40771932	40772225	SINE|Alu|AluJo	-	chr19	40775176	40777493	MIA|NM_001202553.1	+	40775176,40775536,40775751,40776968,40777396	40775211,40775669,40775885,40777079,40777493	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	9140393	9140428	9140393	+	High_confidence	54	54	197	7.567776	6.178782	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.776650
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	59619868	59619923	59619894	+	High_confidence	1495	1715	6611	253.962278	6.037265	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.956134
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	227142956	227143001	227142956	-	RAMPAGE_only	12	14	30	1.152453	4.521641	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.533333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	31121301	31121338	31121337	-	RAMPAGE_only	7	7	25	0.960378	3.833270	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.920000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	7754076	7754077	7754076	+	High_confidence	21	21	22	0.845132	3.939471	chr4	7753883	7754236	LTR|ERVL-MaLR|THE1A	+	chr4	7754089	7778928	AFAP1-AS1|NR_026892.1	+	7754089,7772203	7754159,7778928	0.863636
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	6866529	6866558	6866552	-	High_confidence	14	15	41	1.575019	4.701944	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.853659
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	116648864	116648917	116648864	-	RAMPAGE_only	5	5	32	1.229283	4.506891	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.937500
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	75133816	75133886	75133853	-	RAMPAGE_only	4	5	20	0.768302	3.932138	chr14	75133229	75134244	LINE|L1|L1ME1	+	chr14	75131469	75176532	MSTRG.8107.2	-	75131469,75134082,75135759,75147663,75152031,75176354	75133914,75135006,75135886,75147737,75152143,75176532	0.950000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	98289287	98289289	98289287	-	RAMPAGE_only	17	29	40	1.536604	4.003702	chr9	98289190	98289411	SINE|MIR|MIRc	-	chr9	98288081	98709197	GABBR2|ENST00000259455.3	-	98288081,98293784,98299223,98303240,98306120,98311094,98362714,98371463,98385639,98388853,98394174,98406080,98453980,98473145,98480931,98496412,98541872,98577934,98708416	98290749,98293902,98299353,98303423,98306345,98311205,98362837,98371571,98385772,98389004,98394255,98406141,98454217,98473346,98480997,98496514,98542043,98578072,98709197	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	166850222	166850243	166850242	+	RAMPAGE_only	3	3	11	0.422566	2.663533	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	52615423	52615438	52615423	-	High_confidence	6	6	21	0.806717	3.384184	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.952381
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	26551813	26551820	26551819	+	High_confidence	4	4	10	0.384151	2.921928	chr7	26551639	26551841	SINE|MIR|MIR	-	chr7	26551821	26557200	AC004947.1|ENST00000420912.1	+	26551821,26554808	26552210,26557200	0.800000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	17617796	17617798	17617796	-	High_confidence	3	5	8	0.307321	2.807355	chr10	17617759	17617913	SINE|Alu|FRAM	-	chr10	17589031	17617377	HACD1|ENST00000361271.7	-	17589031,17594204,17599289,17603559,17603725,17603929,17617082	17590446,17594383,17599411,17603648,17603744,17604047,17617377	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	128473686	128473722	128473686	+	RAMPAGE_only	2	3	7	0.268906	2.521641	chr9	128473736	128473912	SINE|MIR|MIRb	+	chr9	128460558	128500255	ODF2|ENST00000444119.6	+	128460558,128460941,128469182,128471307,128472912,128473609,128481579,128482815,128483937,128484700,128485364,128487889,128492425,128492700,128494509,128496040,128498412,128499000,128500066	128460666,128461010,128469353,128471468,128473042,128473741,128481651,128482887,128484054,128484886,128485474,128488025,128492536,128492805,128494668,128496141,128498575,128499126,128500255	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	14320773	14320798	14320780	+	RAMPAGE_only	4	4	12	0.460981	3.251629	chr18	14320636	14320954	LTR|ERVL-MaLR|MSTA-int	+	chr18	14337422	14342524	CYP4F35P|ENST00000582957.1	+	14337422,14339511,14340381,14341521	14338896,14339640,14340651,14342524	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	75248150	75248151	75248150	-	High_confidence	59	60	65	2.496982	4.741729	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.830769
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	94186131	94186141	94186131	+	RAMPAGE_only	6	6	10	0.384151	2.921928	chr12	94186102	94186206	DNA|hAT-Charlie|MER5A	+	chr12	94148862	94305598	MSTRG.6352.2	+	94148862,94169152,94181445,94186372,94209589,94220015,94224227,94226604,94227148,94237663,94240484,94243937,94247902,94248226,94251425,94254786,94255192,94259336,94259609,94260641,94265078,94279471,94282297,94294485,94297188,94297315,94298631,94300909,94303755,94303976,94304617,94305180	94150033,94169293,94181580,94186473,94209704,94220163,94224315,94226707,94227235,94237803,94240664,94244025,94248106,94248412,94251528,94254888,94255296,94259375,94259734,94260840,94265225,94279649,94282401,94294540,94297220,94297423,94298795,94301057,94303896,94304051,94304688,94305598	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	79455504	79455537	79455536	-	High_confidence	5	5	15	0.576227	3.467720	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.866667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	6827952	6827969	6827952	+	RAMPAGE_only	4	4	8	0.307321	2.750000	chr1	6827740	6828177	DNA|TcMar-Tigger|MamRep137	-	chr1	6825109	6888188	CAMTA1|ENST00000482934.1	+	6825109,6886239,6887653	6825210,6886346,6888188	0.625000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	71728553	71728578	71728558	-	High_confidence	2	2	14	0.537812	3.334679	chr3	71728377	71728554	SINE|MIR|MIR3	-	chr3	71684619	71728637	EIF4E3|ENST00000468147.5	-	71684619,71690009,71693874,71710411,71728475	71684728,71690165,71693941,71710484,71728637	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	10363827	10363828	10363827	+	High_confidence	4	4	6	0.230491	2.584963	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100903676	100903726	100903704	-	High_confidence	10	10	29	1.114038	4.306257	chr14	100903521	100903697	SINE|MIR|MIRb	-	chr14	100879752	100903722	RTL1|ENST00000649591.1	-	100879752,100893443,100903290,100903604	100884874,100893505,100903386,100903722	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	121313981	121314021	121314020	+	RAMPAGE_only	23	23	89	3.418945	4.690634	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	47004182	47004218	47004182	+	High_confidence	21	22	52	1.997586	5.026987	chr1	47003946	47004346	LTR|ERV1|MER51B	+	chr1	47004239	47050754	CYP4X1|NM_001320290.1	+	47004239,47029989,47031435,47033240,47035805,47036016,47038659,47039341,47046466,47048564,47049421,47049999	47004369,47030131,47031480,47033368,47035933,47036171,47038766,47039532,47046600,47048629,47049504,47050754	0.980769
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	40	40	40	1.536604	4.025071	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	68975842	68975855	68975842	-	High_confidence	18	18	63	2.420152	5.057055	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.603175
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	11321325	11321326	11321325	-	High_confidence	8	11	11	0.422566	2.913977	chr19	11321200	11321519	LTR|ERVL-MaLR|THE1D	-	chr19	11300866	11321323	AC011472.2|ENST00000585801.1	-	11300866,11306678,11321293	11301236,11306824,11321323	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	121498521	121498547	121498521	-	RAMPAGE_only	3	3	12	0.460981	3.084963	chr10	121498455	121498527	DNA|hAT-Ac|OldhAT1	+	chr10	121479854	121515179	FGFR2|ENST00000429361.5	-	121479854,121485394,121487353,121487990,121496531,121498494,121500825,121503789,121515116	121480021,121485532,121487424,121488113,121496722,121498605,121500947,121503941,121515179	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	123179220	123179221	123179220	-	RAMPAGE_only	9	9	9	0.345736	3.169925	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	21937753	21937760	21937753	+	RAMPAGE_only	2	2	7	0.268906	2.521641	chr20	21937554	21938148	DNA|TcMar-Tigger|MER6A	+	chr20	21947646	21970783	AL109807.1|ENST00000438222.1	+	21947646,21970270	21947702,21970783	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	176167952	176167974	176167952	-	High_confidence	4	4	9	0.345736	2.500000	chr5	176167895	176168757	LINE|L1|L1MC4	+	chr5	176158610	176168038	AC139491.2|ENST00000503307.2	-	176158610,176167662	176159196,176168038	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	71758019	71758074	71758073	+	RAMPAGE_only	3	3	12	0.460981	2.918296	chr15	71758120	71758240	SINE|MIR|MIR	+	chr15	71547235	71778626	THSD4|ENST00000357769.4	+	71547235,71660529,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71771063,71777231	71547481,71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71771208,71778626	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	1546727	1546772	1546759	+	RAMPAGE_only	15	15	38	1.459774	4.290966	chr10	1546662	1546793	SINE|tRNA|LFSINE_Vert	-	chr10	1526636	1556984	ADARB2-AS1|ENST00000421697.2	+	1526636,1556610	1526899,1556984	0.789474
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	52570180	52570186	52570185	+	RAMPAGE_only	7	8	17	0.653057	3.292770	chr13	52569964	52570306	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.647059
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	97241155	97241170	97241169	+	RAMPAGE_only	2	3	9	0.345736	2.750000	chr2	97241018	97241180	LINE|L2|L2c	+	chr2	97212726	97249050	ANKRD36|ENST00000421946.2	+	97212726,97213541,97215300,97215424,97217176,97217299,97219049,97219173,97224808,97233729,97241265,97243845,97245156,97247475	97213447,97213614,97215329,97215497,97217205,97217372,97219078,97219246,97224879,97233871,97241479,97244029,97246071,97249050	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	44887702	44887705	44887704	+	RAMPAGE_only	6	9	13	0.499396	2.931209	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885713	44906504	YWHAB|ENST00000631616.1	+	44885713,44901530,44904967,44906381	44887742,44904116,44906096,44906504	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	6208681	6208682	6208681	-	High_confidence	100	100	100	3.841511	3.962404	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.970000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	51006088	51006228	51006088	-	RAMPAGE_only	6	8	90	3.457360	5.547191	chr17	51005881	51006041	DNA|hAT-Charlie|Charlie17a	-	chr17	50996228	51001745	SPAG9|ENST00000513827.5	-	50996228,50998443,50999660,51001714	50996694,50998617,50999717,51001745	0.744444
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100929920	100929921	100929920	+	RAMPAGE_only	47	58	58	2.228076	5.327724	chr14	100929864	100929989	LINE|L1|L1ME5	+	chr14	100907042	100947076	MSTRG.8371.66	+	100907042,100910232,100913431,100916678,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100907132,100910304,100916658,100931545,100935881,100937488,100938956,100940450,100942838,100944925,100947076	0.982759
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	105294659	105294666	105294659	+	High_confidence	4	5	10	0.384151	2.641604	chr9	105294276	105294867	LINE|L1|L1MEf	-	chr9	105294665	105335587	SLC44A1|ENST00000607692.1	+	105294665,105299219,105299742,105309723,105335562	105294798,105299309,105299937,105309866,105335587	0.800000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	147382883	147382900	147382883	+	High_confidence	22	23	102	3.918341	4.980517	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.745098
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	24580600	24580613	24580610	+	High_confidence	3	3	14	0.537812	3.521641	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	39800293	39800316	39800293	-	High_confidence	10	10	54	2.074416	5.265467	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.574074
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	74109000	74109027	74109026	+	RAMPAGE_only	4	7	11	0.422566	2.913977	chr7	74109018	74109171	SINE|MIR|MIR3	+	chr7	74115367	74121029	LIMK1|ENST00000476792.1	+	74115367,74120582,74120891	74115958,74120638,74121029	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	43013460	43013473	43013472	-	High_confidence	6	9	13	0.499396	2.931209	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	9422970	9422971	9422970	-	High_confidence	4	4	7	0.268906	2.521641	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9403474	9423229	ITGB1BP1|ENST00000360635.7	-	9403474,9407448,9408112,9412268,9414177,9418625,9419989,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9420100,9423229	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	21075853	21075856	21075853	+	High_confidence	20	20	34	1.306114	3.744772	chr17	21075733	21075870	LINE|L2|L2a	-	chr17	21075555	21090615	LINC01563|ENST00000456235.1	+	21075555,21090267	21075957,21090615	0.794118
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	69886136	69886255	69886225	+	High_confidence	15	18	93	3.572605	5.880505	chr9	69885902	69886640	DNA|TcMar-Tigger|MER44C	+	chr9	69886149	69906199	MSTRG.26300.8	+	69886149,69886837,69905953	69886373,69886895,69906199	0.720430
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	2205804	2205875	2205850	+	High_confidence	44	44	433	16.633742	5.789507	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.974596
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	41302309	41302442	41302309	+	RAMPAGE_only	4	6	53	2.036001	3.691767	chr15	41302213	41302521	SINE|Alu|AluSc	+	chr15	41284004	41306534	OIP5-AS1|ENST00000500949.6	+	41284004,41285224,41286010,41298040	41284110,41285363,41286100,41306534	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	33864076	33864104	33864076	+	RAMPAGE_only	4	4	16	0.614642	3.155639	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	170267210	170267260	170267210	-	High_confidence	6	6	43	1.651850	4.815312	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.906977
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	26957047	26957050	26957047	+	High_confidence	2	2	7	0.268906	2.584963	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26956992	27023924	LINC00240|ENST00000606878.1	+	26956992,26968457,27023253	26957183,26968522,27023924	0.571429
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	98733155	98733177	98733165	+	High_confidence	2	2	12	0.460981	3.188722	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	152577848	152577873	152577870	+	High_confidence	6	7	18	0.691472	3.969816	chr2	152577857	152578203	LINE|L2|L2a	-	chr2	152578620	152607653	FMNL2|ENST00000492942.1	+	152578620,152580955,152607338	152578964,152581049,152607653	0.722222
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	55727317	55727353	55727352	+	RAMPAGE_only	2	2	11	0.422566	2.646439	chrX	55727344	55727437	LINE|L2|L2b	-	chrX	55731400	55751623	RRAGB|ENST00000474757.1	+	55731400,55751100	55731586,55751623	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	153871899	153871922	153871911	+	High_confidence	5	5	20	0.768302	3.721928	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	53523862	53523891	53523890	-	High_confidence	15	16	57	2.189661	5.148316	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.877193
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	8681676	8681677	8681676	+	High_confidence	38	38	45	1.728680	5.141250	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.555556
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	58314773	58314881	58314773	+	RAMPAGE_only	2	2	24	0.921963	3.497056	chr19	58314650	58314839	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.708333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	78054961	78055040	78055024	+	High_confidence	17	18	60	2.304906	5.198245	chr13	78055000	78055239	LTR|ERV1|LTR12C	-	chr13	78054844	78578714	RNF219-AS1|ENST00000605996.5	+	78054844,78189607,78274252,78363571,78578476	78055064,78189696,78274337,78363731,78578714	0.516667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	101653656	101653679	101653678	-	RAMPAGE_only	6	6	11	0.422566	2.845351	chr10	101653453	101653821	LINE|L2|L2c	+	chr10	101610663	101626899	FBXW4|ENST00000470093.5	-	101610663,101611627,101612336,101624744	101611410,101611769,101612477,101626899	0.727273
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	84158990	84159004	84158990	+	High_confidence	2	2	7	0.268906	2.584963	chr16	84158730	84159030	SINE|Alu|AluSz	-	chr16	84159039	84177920	DNAAF1|NM_001318756.1	+	84159039,84159674,84165782,84169858,84172259,84174668,84175932,84177728	84159211,84159796,84165997,84170356,84172375,84174722,84176299,84177920	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	216211798	216211866	216211831	+	High_confidence	6	11	43	1.651850	4.420811	chr2	216211770	216212657	LTR|ERV1|MER49	-	chr2	216211403	216213519	AC012513.3|ENST00000623250.1	+	216211403	216213519	0.953488
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	99897271	99897284	99897271	+	High_confidence	2	3	8	0.307321	2.521641	chr14	99897314	99897417	SINE|Alu|FLAM_A	+	chr14	99897241	99910322	EML1|ENST00000554553.5	+	99897241,99898232,99900928,99907637,99909308,99910241	99897294,99898302,99901039,99907733,99909479,99910322	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	147937510	147937529	147937510	+	RAMPAGE_only	5	5	15	0.576227	3.456565	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.800000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	57451562	57451576	57451564	+	RAMPAGE_only	3	5	15	0.576227	3.039149	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.933333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	80059915	80059933	80059918	+	High_confidence	120	144	338	12.984306	5.399056	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.964497
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	3536836	3536885	3536845	-	High_confidence	6	6	46	1.767095	4.231270	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.847826
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	74199383	74199405	74199404	+	High_confidence	13	13	21	0.806717	3.932138	chr8	74199086	74199513	LINE|L2|L2a	+	chr8	74199395	74208441	AC087627.1|ENST00000522339.2	+	74199395,74207358,74207720	74199532,74207493,74208441	0.904762
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	92847193	92847209	92847195	-	RAMPAGE_only	2	4	9	0.345736	3.000000	chr1	92847043	92847171	LINE|L1|L1ME4c	-	chr1	92842159	92877150	FAM69A|ENST00000613047.4	-	92842159,92847182,92850847,92876295,92876960	92844195,92847359,92850955,92876430,92877150	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	85330227	85330287	85330237	-	RAMPAGE_only	14	15	48	1.843925	5.027889	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.854167
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	200888579	200888588	200888587	-	High_confidence	7	7	13	0.499396	2.855389	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.769231
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	32403116	32403224	32403148	-	RAMPAGE_only	38	42	134	5.147624	5.876749	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.977612
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	184537549	184537596	184537549	-	High_confidence	9	11	40	1.536604	4.565312	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.700000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	19344388	19344429	19344388	-	RAMPAGE_only	13	15	45	1.728680	4.230278	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	166850306	166850323	166850306	+	RAMPAGE_only	3	3	11	0.422566	2.646439	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	4143199	4143218	4143199	+	High_confidence	161	166	421	16.172760	5.954581	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.995249
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	149608338	149608363	149608338	-	RAMPAGE_only	3	3	10	0.384151	2.921928	chr6	149608148	149609381	LINE|L1|L1MA5	+	chr6	149598052	149603373	KATNA1|ENST00000481905.5	-	149598052,149601593,149603267	149598350,149601752,149603373	0.600000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	35432499	35432500	35432499	-	High_confidence	5	5	8	0.307321	2.521641	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	64226142	64226180	64226158	-	High_confidence	94	99	368	14.136760	6.904698	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.961957
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	152347679	152347680	152347679	-	RAMPAGE_only	16	16	16	0.614642	2.905639	chr5	152347584	152347683	DNA|TcMar-Mariner|MADE1	+	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	98045583	98045605	98045583	+	RAMPAGE_only	2	2	6	0.230491	2.584963	chr9	98045312	98045711	LTR|ERV1|MER57B1	+	chr9	98056676	98083083	NANS|NM_018946.3	+	98056676,98060781,98076917,98078192,98080815,98082845	98056940,98060997,98077017,98078347,98081082,98083083	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	180830987	180831010	180831009	+	High_confidence	16	17	71	2.727473	5.229234	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.957746
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	12522656	12522684	12522682	+	RAMPAGE_only	9	12	22	0.845132	3.386266	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	65423957	65423974	65423957	+	High_confidence	7	7	17	0.653057	3.375000	chr18	65423814	65424190	LTR|ERVL-MaLR|THE1C	+	chr18	65424012	65447512	LINC01916|ENST00000582028.1	+	65424012,65441689,65447146	65424071,65441823,65447512	0.941176
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	45593653	45593667	45593653	+	High_confidence	9	10	15	0.576227	3.521641	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	0.866667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	154928492	154928504	154928503	+	High_confidence	13	13	21	0.806717	4.037401	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.761905
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	175316438	175316479	175316472	-	RAMPAGE_only	3	3	10	0.384151	3.121928	chr1	175316451	175316591	DNA|hAT-Charlie|Charlie16a	-	chr1	175315193	175743770	TNR|ENST00000367674.6	-	175315193,175324355,175330073,175335710,175337527,175354390,175355502,175356318,175359611,175362662,175363707,175365009,175365874,175367207,175379551,175386031,175391287,175393779,175396543,175403139,175406215,175528268,175743225	175323476,175324519,175330235,175335807,175337679,175354523,175355633,175356462,175359731,175362809,175363827,175365279,175366138,175367297,175379737,175386301,175391438,175393895,175396807,175403616,175406777,175528369,175743770	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	91179462	91179526	91179462	-	High_confidence	695	718	1963	75.408857	7.349221	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91145735	91179355	MSTRG.6323.7	-	91145735,91151653,91153095,91157074,91158295,91164604,91178341,91179317	91146252,91151792,91153189,91157270,91158509,91164717,91178585,91179355	0.964850
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	49086546	49086547	49086546	+	High_confidence	8	8	9	0.345736	3.000000	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.777778
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	163411529	163411530	163411529	+	RAMPAGE_only	11	11	11	0.422566	3.277613	chr6	163411253	163411820	LINE|L2|L2a	-	chr6	163413999	163573800	QKI|ENST00000361758.8	+	163413999,163455278,163478779,163534981,163561981,163563419,163565945,163570693	163415335,163455421,163478896,163535125,163562069,163563719,163566795,163573800	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	29924788	29924800	29924788	+	High_confidence	3	3	11	0.422566	2.646439	chr3	29924556	29924859	SINE|Alu|AluSp	+	chr3	29924750	29991197	RBMS3|ENST00000473799.1	+	29924750,29936085,29944206,29988142,29991081	29925243,29936196,29944254,29988223,29991197	0.909091
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	28291847	28291848	28291847	+	High_confidence	5	5	7	0.268906	2.521641	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291847	28319770	CMC1|ENST00000495428.5	+	28291847,28316332,28318731,28319508	28291954,28316423,28318879,28319770	0.571429
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	59378349	59378352	59378349	+	RAMPAGE_only	6	6	10	0.384151	2.503258	chr1	59378155	59378491	LTR|ERVL-MaLR|THE1B	+	chr1	59393207	59626023	FGGY|ENST00000475949.5	+	59393207,59456960,59512310,59554123,59607802,59625987	59393294,59457076,59512439,59554227,59607910,59626023	0.700000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	27983009	27983068	27983009	-	High_confidence	10	10	28	1.075623	4.039149	chr10	27982876	27983540	LTR|ERVL|LTR50	+	chr10	27812163	27983106	ARMC4|NM_001312689.1	-	27812163,27860624,27862433,27907662,27935009,27936725,27939896,27940562,27944221,27944815,27961567,27968922,27971107,27981465,27982928	27812625,27860846,27862622,27907777,27935252,27936880,27940007,27940805,27944431,27944962,27961715,27969018,27971313,27981582,27983106	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	23417917	23417950	23417917	-	RAMPAGE_only	4	4	18	0.691472	3.503258	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	70401416	70401505	70401504	+	RAMPAGE_only	11	17	72	2.765888	5.459933	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.680556
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	73713169	73713217	73713194	-	RAMPAGE_only	6	6	29	1.114038	4.060760	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	25261301	25261324	25261323	+	RAMPAGE_only	3	4	13	0.499396	3.251629	chr15	25255613	25261749	LINE|L1|L1PA5	+	chr15	25262478	25419462	MSTRG.8531.80	+	25262478,25266911,25268328,25269604,25271417,25277366,25278846,25391595,25418787	25266614,25267044,25268453,25269733,25271534,25277409,25278884,25391791,25419462	0.615385
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	62897365	62897401	62897365	+	High_confidence	3	3	12	0.460981	3.251629	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	154975524	154975546	154975524	+	High_confidence	3	3	8	0.307321	2.750000	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	85626321	85626352	85626351	+	RAMPAGE_only	8	9	27	1.037208	3.958229	chr14	85626237	85626418	SINE|tRNA-RTE|MamSINE1	-	chr14	85530227	85654407	MSTRG.8182.5	+	85530227,85531166	85530534,85654407	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	39809803	39809865	39809858	-	High_confidence	30	53	138	5.301285	4.970597	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.855072
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	139344535	139344548	139344547	+	High_confidence	46	46	138	5.301285	5.250485	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.927536
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	68413721	68413753	68413721	+	High_confidence	4	4	15	0.576227	3.373557	chr17	68408123	68414142	LINE|L1|L1PA3	-	chr17	68413622	68524949	AC007780.1|ENST00000590353.1	+	68413622,68515393,68522755,68523724,68524015,68524911	68413795,68515576,68522926,68523816,68524077,68524949	0.600000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	44798597	44798602	44798597	-	RAMPAGE_only	3	3	8	0.307321	2.750000	chr14	44798404	44800073	LTR|ERV1|LTR12C	+	chr14	44392541	44393716	AL161752.1|ENST00000557506.1	-	44392541,44393617	44392690,44393716	0.625000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	106278141	106278143	106278141	+	High_confidence	17	23	26	0.998793	3.970176	chr9	106277947	106278267	LINE|RTE-X|L4_C_Mam	+	chr9	106278391	106604795	LINC01505|ENST00000435485.5	+	106278391,106279100,106499486,106500356,106558471,106588376,106603755	106278472,106279190,106499612,106500505,106558583,106588464,106604795	0.653846
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	205012813	205012863	205012813	+	RAMPAGE_only	5	5	17	0.653057	3.292770	chr1	205012785	205012855	LINE|CR1|L3	+	chr1	205008444	205021031	NFASC|ENST00000503221.1	+	205008444,205012796,205016307	205009688,205012866,205021031	0.941176
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	4642169	4642189	4642169	+	RAMPAGE_only	2	2	9	0.345736	2.500000	chr16	4642124	4642285	SINE|Alu|AluSz	-	chr16	4650386	4680067	MGRN1|ENST00000590790.5	+	4650386,4651962,4652677,4657245,4664708,4665098,4668264,4671390,4673497,4677462,4680031	4650483,4652051,4652824,4657363,4664775,4665151,4668312,4671459,4673657,4677572,4680067	0.777778
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	46280215	46280289	46280215	-	RAMPAGE_only	3	3	19	0.729887	2.752855	chr1	46280045	46280180	SINE|MIR|MIRb	-	chr1	46278400	46286112	LRRC41|ENST00000617760.4	-	46278400,46278906,46279181,46279491,46280191,46280395,46281124,46285361	46278905,46279084,46279257,46279614,46280290,46280560,46281385,46286112	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	31376356	31376357	31376356	-	High_confidence	11	14	14	0.537812	3.182006	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	100268208	100268281	100268280	+	RAMPAGE_only	22	24	87	3.342114	3.896381	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	177499694	177499715	177499694	+	RAMPAGE_only	2	4	8	0.307321	2.500000	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	36125403	36125411	36125410	+	RAMPAGE_only	3	4	10	0.384151	2.503258	chr20	36125311	36125539	SINE|MIR|MIR	+	chr20	36154739	36232799	EPB41L1|NM_012156.2	+	36154739,36173763,36175550,36177951,36178629,36182271,36185116,36187675,36188346,36190276,36190621,36194211,36195328,36197858,36209487,36212271,36214356,36218875,36219760,36221863,36222277,36229331	36154896,36173954,36175715,36178056,36178672,36182347,36185335,36187763,36188499,36190374,36190797,36194360,36195364,36198041,36209898,36212376,36214440,36218962,36219844,36221944,36222394,36232799	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	82093996	82094039	82094031	+	RAMPAGE_only	5	5	19	0.729887	3.947703	chr15	82093781	82094459	DNA|TcMar-Tigger|Tigger7	+	chr15	82088632	82095707	LINC01583|ENST00000559788.1	+	82088632,82091726,82095481	82088728,82091935,82095707	0.736842
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	108582406	108582448	108582435	+	High_confidence	10	10	39	1.498189	4.855790	chrX	108582274	108582629	LINE|L1|L1ME1	-	chrX	108582491	108627269	COL4A5|ENST00000483338.1	+	108582491,108584483,108586614,108591057,108591560,108595508,108596997,108597376,108598701,108601392,108601884,108602963,108606741,108614910,108620258,108621802,108622675,108624235,108625704,108626209	108582937,108584525,108586747,108591231,108591644,108595601,108597068,108597568,108598870,108601485,108601989,108603061,108606892,108615024,108620426,108621892,108622825,108624334,108625794,108627269	0.897436
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	95637102	95637141	95637102	-	RAMPAGE_only	3	3	16	0.614642	3.373557	chr10	95636801	95637054	SINE|MIR|MIR	-	chr10	95625429	95628853	ALDH18A1|ENST00000489386.1	-	95625429,95626702,95627441,95628367,95628680	95625455,95626776,95627586,95628492,95628853	0.687500
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	80950194	80950197	80950196	+	RAMPAGE_only	5	9	14	0.537812	2.950212	chr15	80950173	80950275	SINE|MIR|MIR3	-	chr15	80779370	80951776	CEMIP|ENST00000394685.7	+	80779370,80873537,80873863,80878720,80879715,80880899,80884174,80887693,80888700,80889470,80894989,80895868,80906662,80909096,80920093,80921031,80922008,80924620,80925623,80928901,80929018,80931858,80933244,80936673,80937793,80941848,80942250,80942944,80946964,80948796	80779614,80873696,80873973,80878867,80879854,80881136,80884354,80887764,80888796,80889592,80895122,80896060,80906838,80909306,80920299,80921101,80922137,80924706,80925755,80928937,80929174,80932039,80933460,80936885,80937979,80942053,80942337,80943102,80947065,80951776	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	141332616	141332617	141332616	-	High_confidence	63	63	70	2.689058	4.526999	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.928571
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	4669251	4669252	4669251	+	High_confidence	7	7	7	0.268906	2.521641	chr16	4669151	4669448	SINE|Alu|AluSz	+	chr16	4669120	4681580	MGRN1|ENST00000591673.1	+	4669120,4671390,4673497,4677462,4680031,4681549	4669252,4671459,4673657,4677572,4680097,4681580	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	77745444	77745491	77745490	-	High_confidence	2	2	9	0.345736	2.947703	chr1	77744859	77745606	LINE|L1|L1P1	-	chr1	77695990	77745462	USP33|ENST00000357428.5	-	77695990,77697862,77701368,77711746,77713199,77714613,77715741,77717866,77718595,77721171,77721830,77722023,77723330,77725621,77728294,77729859,77730617,77734346,77736055,77739264,77740876,77741375,77741616,77745420	77697474,77697931,77701471,77711855,77713281,77714783,77715868,77718047,77718641,77721205,77721925,77722196,77723443,77725762,77728712,77729938,77730731,77734416,77736158,77739417,77740939,77741429,77741748,77745462	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	182030742	182030784	182030783	+	High_confidence	3	5	13	0.499396	3.251629	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.846154
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	12522764	12522814	12522813	+	RAMPAGE_only	15	15	76	2.919548	4.994378	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	187021850	187021852	187021851	+	High_confidence	32	56	59	2.266491	4.863981	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.898305
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	134432378	134432451	134432378	-	High_confidence	19	21	104	3.995171	4.921871	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.778846
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	113773650	113773692	113773685	-	High_confidence	19	20	44	1.690265	4.802915	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113744576	113773683	LINC01234|ENST00000547963.1	-	113744576,113773614	113746595,113773683	0.545455
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	65383609	65383616	65383614	-	RAMPAGE_only	4	7	12	0.460981	2.918296	chr3	65383574	65383652	DNA|hAT-Ac|OldhAT1	-	chr3	65375764	65380831	MAGI1|ENST00000480729.1	-	65375764,65379260,65380741	65375948,65379554,65380831	0.916667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	69237169	69237188	69237171	-	RAMPAGE_only	3	5	11	0.422566	3.277613	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.636364
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	17282867	17282892	17282885	+	RAMPAGE_only	2	2	9	0.345736	2.750000	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	79254817	79254818	79254817	-	High_confidence	15	15	16	0.614642	3.506891	chr18	79254697	79255104	LINE|L2|L2a	+	chr18	79253576	79254856	AC104423.1|ENST00000591742.1	-	79253576,79254357	79253805,79254856	0.937500
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	111293646	111293664	111293663	+	RAMPAGE_only	3	3	7	0.268906	2.584963	chr13	111293654	111293701	LINE|RTE-BovB|MamRTE1	+	chr13	111241144	111295195	ARHGEF7|NM_001320854.1	+	111241144,111243871,111244198,111267547,111273813,111274730,111275531,111277586,111280271,111280537,111283138,111286146,111288353,111292117	111241336,111243966,111244294,111267670,111273952,111274790,111275678,111277673,111280350,111280677,111283363,111286240,111288443,111295195	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	3380960	3380961	3380960	+	High_confidence	11	11	11	0.422566	3.027169	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.818182
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	69425654	69425692	69425689	+	High_confidence	33	34	154	5.915927	4.815414	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425689	69429621	AP000439.3|ENST00000545202.1	+	69425689,69427362	69425806,69429621	0.974026
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	2242922	2242923	2242922	+	High_confidence	17	17	17	0.653057	3.454822	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	53430375	53430399	53430375	-	RAMPAGE_only	2	2	7	0.268906	2.807355	chr1	53430030	53430736	LTR|ERV1|LTR49-int	+	chr1	53413148	53439975	SLC25A3P1|ENST00000563752.5	-	53413148,53417527,53439774	53413268,53417666,53439975	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	15723980	15723981	15723980	+	RAMPAGE_only	58	58	59	2.266491	3.834563	chr5	15723863	15724297	LINE|L1|L1M4c	-	chr5	15500412	15802467	MSTRG.20588.2	+	15500412,15615982,15642750	15500713,15642572,15802467	0.983051
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	11324805	11324811	11324807	+	RAMPAGE_only	5	7	15	0.576227	3.773557	chr8	11324706	11324870	SINE|Alu|AluJo	+	chr8	11284490	11328146	MTMR9|NM_015458.3	+	11284490,11295193,11300022,11304840,11306189,11309526,11314922,11316672,11319686,11322624	11285070,11295302,11300148,11305014,11306407,11309688,11315064,11316893,11319838,11328146	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	128082243	128082260	128082243	-	High_confidence	2	2	8	0.307321	2.807355	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	128024026	128082960	LINC01184|ENST00000508878.5	-	128024026,128061143,128076946,128081972,128082734	128024298,128061244,128077093,128082194,128082960	0.625000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	100438676	100438677	100438676	+	RAMPAGE_only	13	18	18	0.691472	3.836592	chr13	100438447	100438841	LTR|ERVL|LTR47B2	+	chr13	100368471	100530432	PCCA|ENST00000458283.5	+	100368471,100425632,100449251,100527674,100530097	100368574,100425731,100449305,100527752,100530432	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	89888929	89888964	89888929	+	RAMPAGE_only	21	22	47	1.805510	4.354552	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.765957
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	57746128	57746129	57746128	+	High_confidence	35	35	35	1.344529	4.318868	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	53217927	53217928	53217927	+	High_confidence	6	7	8	0.307321	2.750000	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217954	53786106	AL365295.1|ENST00000648066.1	+	53217954,53313715,53318030,53369451,53687198,53737666,53765657,53769014,53785144,53785727	53218055,53313790,53318138,53369501,53687374,53737766,53765719,53769133,53785250,53786106	0.625000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	57267761	57267787	57267761	+	RAMPAGE_only	3	3	10	0.384151	2.947703	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.800000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	5726383	5726387	5726386	-	High_confidence	8	8	15	0.576227	3.664498	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.866667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	36845166	36845186	36845185	-	RAMPAGE_only	5	5	13	0.499396	3.251629	chr20	36845090	36845208	DNA|hAT-Charlie|MER5A	+	chr20	36828596	36839402	SOGA1|ENST00000463491.1	-	36828596,36839216	36829212,36839402	0.692308
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	10363964	10363974	10363964	+	High_confidence	17	18	26	0.998793	4.323856	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.807692
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	43881909	43881938	43881909	-	High_confidence	3	3	11	0.422566	2.921928	chr7	43881785	43881943	LINE|L2|L2	+	chr7	43878943	43881896	URGCP|ENST00000467410.1	-	43878943,43881658	43879260,43881896	0.545455
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	48111150	48111181	48111171	-	RAMPAGE_only	3	3	9	0.345736	2.750000	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47856417	48069564	MSTRG.22581.2	-	47856417,48008633,48068055,48068952	47879936,48009114,48068641,48069564	0.555556
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	137268353	137268354	137268353	-	High_confidence	9	9	14	0.537812	3.392747	chr7	137267941	137268351	LTR|ERV1|HERVE_a-int	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	155058742	155058785	155058784	+	High_confidence	5	5	12	0.460981	2.584963	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.916667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	104763726	104763746	104763726	+	High_confidence	3	3	17	0.653057	3.852169	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	84994298	84994358	84994298	-	RAMPAGE_only	12	12	32	1.229283	4.304229	chr4	84994200	84994560	LTR|ERVL|LTR67B	-	chr4	84669536	84966391	WDFY3|NM_014991.4	-	84669536,84677198,84678167,84678918,84682373,84683942,84688085,84690505,84691630,84692884,84695969,84696731,84702352,84704337,84705393,84708908,84709292,84713158,84715297,84716895,84718421,84721408,84724425,84726860,84733381,84735042,84736169,84737183,84739009,84740186,84741760,84743699,84751482,84753696,84755265,84756925,84765809,84766251,84772834,84774819,84775064,84778502,84780107,84782962,84785978,84787481,84789725,84794518,84794878,84796520,84797995,84801649,84803289,84808333,84809886,84817391,84820084,84821083,84826814,84829003,84831412,84836928,84841153,84849901,84860411,84896910,84932269,84966208	84672991,84677396,84678279,84679242,84682470,84684125,84688265,84690664,84691785,84693032,84696182,84696823,84702506,84704444,84705511,84709028,84709347,84713239,84715383,84717016,84718570,84721572,84724594,84726911,84733609,84735120,84736327,84737366,84739119,84740416,84741921,84743799,84751716,84753876,84755400,84757161,84766027,84766372,84772929,84774981,84775138,84778655,84780298,84783074,84786139,84787713,84789907,84794737,84794979,84796752,84798108,84801864,84803467,84808417,84810344,84817585,84820186,84821551,84826981,84829190,84831605,84837090,84841263,84850025,84860622,84897010,84932363,84966391	0.687500
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	150081936	150081953	150081952	+	RAMPAGE_only	8	13	21	0.806717	3.208695	chr4	150081714	150082027	SINE|Alu|AluSx1	+	chr4	150079027	150256247	DCLK2|ENST00000506325.5	+	150079027,150102477,150193137,150198001,150203794,150220705,150221676,150224500,150232336,150232681,150239741,150240398,150247602,150248304,150249567,150256019	150079448,150102812,150193240,150198103,150203889,150220778,150221785,150224558,150232456,150232828,150239875,150240476,150247699,150248385,150249684,150256247	0.952381
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	199956046	199956075	199956046	+	High_confidence	3	3	7	0.268906	2.584963	chr2	199955996	199956125	LINE|L1|L1MDb	+	chr2	199955602	199964125	MAIP1|ENST00000392290.5	+	199955602,199959267,199959753,199961780,199963732	199956248,199959339,199959880,199961928,199964125	0.571429
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	158172987	158173025	158173024	-	High_confidence	133	137	209	8.028758	6.044253	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.861244
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	33838256	33838281	33838280	+	RAMPAGE_only	6	6	18	0.691472	3.852169	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	95869924	95869954	95869953	+	RAMPAGE_only	3	4	13	0.499396	3.180833	chr7	95869931	95869979	LINE|L2|L2	-	chr7	95837617	96028321	DYNC1I1|ENST00000519371.1	+	95837617,95869882,95977511,95984814,95987055,95995947,96028174	95837649,95869998,95977601,95984977,95987155,95996073,96028321	0.846154
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	227534913	227534929	227534913	+	RAMPAGE_only	5	5	10	0.384151	2.503258	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	134875053	134875086	134875064	+	High_confidence	2	3	10	0.384151	3.321928	chr5	134874872	134875108	SINE|MIR|MIRb	-	chr5	134875095	134888180	TXNDC15|ENST00000508810.1	+	134875095,134887694	134875188,134888180	0.900000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chrX	147937559	147937584	147937559	+	RAMPAGE_only	3	4	10	0.384151	2.725481	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.600000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	111778285	111778319	111778297	-	RAMPAGE_only	2	2	8	0.307321	2.807355	chr7	111778197	111778307	LINE|RTE-BovB|MamRTE1	+	chr7	111760223	111784426	DOCK4|ENST00000428053.5	-	111760223,111765117,111767031,111769528,111778275,111783856,111784383	111760322,111765222,111767118,111769677,111778369,111783952,111784426	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	67387507	67387512	67387507	-	RAMPAGE_only	2	2	6	0.230491	2.584963	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	3757008	3757035	3757029	-	RAMPAGE_only	12	12	34	1.306114	4.418201	chr6	3756785	3757083	SINE|Alu|AluSc	+	chr6	3722619	3752026	PXDC1|ENST00000380283.4	-	3722619,3727550,3737078,3738056,3751275	3723736,3727662,3737196,3738148,3752026	0.852941
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	111097312	111097352	111097312	-	High_confidence	5	5	30	1.152453	4.573557	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.966667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	26395705	26395706	26395705	+	High_confidence	6	6	6	0.230491	2.584963	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	65570512	65570536	65570521	+	High_confidence	34	53	156	5.992757	6.145264	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.660256
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr5	115850839	115850846	115850839	+	RAMPAGE_only	2	2	6	0.230491	2.584963	chr5	115850763	115851205	LTR|ERV1|LTR56	-	chr5	115842037	115906856	AP3S1|ENST00000640413.1	+	115842037,115866669,115870016,115895086,115902884,115906820	115842106,115866761,115870128,115895158,115902992,115906856	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	15928470	15928471	15928470	+	High_confidence	16	17	19	0.729887	3.997670	chr21	15927832	15928523	LTR|ERVL|LTR41C	-	chr21	15928295	16488329	MIR99AHG|ENST00000635845.1	+	15928295,16071113,16181590,16231055,16391613,16487489	15928529,16071398,16181687,16231115,16391685,16488329	0.526316
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	3195732	3195733	3195732	-	High_confidence	14	14	17	0.653057	3.500000	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182743	3195747	LINC02525|ENST00000425384.6	-	3182743,3190826,3195665	3183726,3191230,3195747	0.823529
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	136489429	136489448	136489429	+	High_confidence	7	9	14	0.537812	3.521641	chr8	136489231	136489726	LTR|ERV1|MER61F	+	chr8	136489447	136529876	LINC02055|ENST00000523232.1	+	136489447,136515965,136519147,136529794	136489502,136516300,136519239,136529876	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100913340	100913354	100913353	+	RAMPAGE_only	4	5	14	0.537812	3.546594	chr14	100913266	100913386	LINE|L1|L1ME5	+	chr14	100907042	100947076	MSTRG.8371.66	+	100907042,100910232,100913431,100916678,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100907132,100910304,100916658,100931545,100935881,100937488,100938956,100940450,100942838,100944925,100947076	0.928571
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	141340539	141340542	141340541	+	High_confidence	3	5	8	0.307321	2.807355	chr8	141340243	141340799	LTR|ERV1|MER4B	-	chr8	141340548	141344621	LINC01300|ENST00000521073.5	+	141340548,141342340,141342957,141344343	141340672,141342476,141343215,141344621	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	32446972	32447021	32446977	+	High_confidence	33	33	109	4.187247	5.460028	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.954128
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	62884018	62884032	62884031	+	High_confidence	3	3	9	0.345736	3.000000	chr11	62883998	62884123	SINE|MIR|MIRb	+	chr11	62884454	62888169	SLC3A2|ENST00000535768.1	+	62884454,62884631,62885176,62888134	62884525,62884690,62885608,62888169	0.777778
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	60825662	60825663	60825662	-	High_confidence	8	8	10	0.384151	2.725481	chr1	60825624	60825834	SINE|MIR|MIRb	-	chr1	60659630	60825584	AC099792.1|ENST00000423403.1	-	60659630,60662984,60729574,60732446,60733463,60825335	60661470,60663025,60729667,60732508,60733522,60825584	0.800000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	174874418	174874446	174874418	+	High_confidence	10	10	55	2.112831	5.370538	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.545455
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	32684301	32684341	32684301	+	High_confidence	18	19	87	3.342114	4.883579	chr15	32683924	32684364	LTR|ERVL-MaLR|MLT1J1	-	chr15	32684415	32692308	SCG5|ENST00000498607.2	+	32684415,32691709	32684669,32692308	0.827586
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr17	47056838	47056839	47056838	-	RAMPAGE_only	40	40	41	1.575019	4.284184	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.829268
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr13	48580933	48580938	48580933	-	High_confidence	7	9	16	0.614642	3.577820	chr13	48580763	48581196	LTR|ERVL-MaLR|THE1B	-	chr13	48576973	48580901	LINC00462|NR_051983.1	-	48576973,48578012,48580840	48577859,48578088,48580901	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr4	87524553	87524573	87524562	-	RAMPAGE_only	10	10	23	0.883547	3.748995	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87473417	87529092	SPARCL1|ENST00000503414.5	-	87473417,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87497130,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87497239,87499585,87529092	0.869565
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	12927701	12927734	12927733	+	High_confidence	24	24	47	1.805510	5.246282	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.680851
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	174874382	174874386	174874382	+	RAMPAGE_only	3	3	7	0.268906	2.521641	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174700730	174990341	RABGAP1L|ENST00000469553.6	+	174700730,174702112,174752312,174811831,174877391,174957456,174957890,174969276,174976077,174978806,174982833,174988640,174989848	174700865,174702256,174752354,174811960,174877605,174957549,174958173,174969387,174976182,174978890,174982905,174988838,174990341	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	78620056	78620058	78620056	+	High_confidence	64	101	101	3.879926	5.536427	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.910891
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr22	39021125	39021156	39021155	+	High_confidence	5	5	14	0.537812	3.392747	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.928571
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	111413972	111413995	111413984	-	RAMPAGE_only	27	27	113	4.340907	5.696092	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	110663049	111562291	IMMP2L|NM_032549.3	-	110663049,110886592,110963499,111487237,111521312,111561850	110663721,110886695,110963565,111487341,111521449,111562291	0.530973
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr10	101653606	101653618	101653606	-	RAMPAGE_only	2	2	7	0.268906	2.521641	chr10	101653453	101653821	LINE|L2|L2c	+	chr10	101610663	101626899	FBXW4|ENST00000470093.5	-	101610663,101611627,101612336,101624744	101611410,101611769,101612477,101626899	0.714286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	7157370	7157382	7157370	+	RAMPAGE_only	2	2	6	0.230491	2.584963	chr7	7157366	7157507	LINE|L1|L1M8	-	chr7	7182614	7248647	C1GALT1|ENST00000436587.6	+	7182614,7234302,7238254,7243523	7182820,7234539,7238922,7248647	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	96895127	96895133	96895132	-	High_confidence	6	6	10	0.384151	3.169925	chr2	96894981	96895398	LINE|L1|L1MC5a	-	chr2	96876025	96895142	FAM178B|ENST00000470789.5	-	96876025,96877889,96878415,96893925,96895060	96876308,96878042,96878493,96894051,96895142	0.700000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	53464815	53464842	53464815	+	RAMPAGE_only	6	6	16	0.614642	3.875000	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	51627601	51627621	51627601	-	RAMPAGE_only	11	11	27	1.037208	3.469670	chr20	51627270	51627593	LINE|L2|L2a	-	chr20	51596513	51768328	ATP9A|ENST00000311637.9	-	51596513,51604816,51607526,51608517,51610100,51613676,51617489,51618661,51618953,51622073,51625191,51627599,51628979,51639342,51656937,51669996,51671114,51674152,51676131,51712965,51725818,51729833,51768301	51601347,51605020,51607584,51608626,51610165,51613832,51617554,51618806,51619043,51622172,51625362,51627683,51629072,51639504,51657150,51670109,51671257,51674313,51676208,51713074,51725932,51729978,51768328	0.888889
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	164821960	164821984	164821960	-	High_confidence	7	7	18	0.691472	3.725481	chr6	164818472	164822156	LINE|L1|L1MA2	+	chr6	164793376	164822063	MEAT6|NR_131926.1	-	164793376,164804955,164805695,164821937	164794152,164805090,164805729,164822063	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr21	29077448	29077501	29077486	+	High_confidence	13	13	49	1.882340	4.849204	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077474	29091576	MAP3K7CL|ENST00000419845.5	+	29077474,29080551,29085812,29091500	29077713,29080708,29085917,29091576	0.673469
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr3	169812887	169812904	169812903	-	High_confidence	6	6	12	0.460981	3.277613	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.916667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	95042538	95042552	95042538	-	RAMPAGE_only	3	4	7	0.268906	2.807355	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.714286
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	31587007	31587021	31587009	+	High_confidence	40	62	100	3.841511	5.122543	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.970000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	179877302	179877344	179877343	-	High_confidence	2	2	6	0.230491	2.584963	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179865064	179877790	TOR1AIP2|ENST00000495650.1	-	179865064,179877692	179865854,179877790	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100831444	100831445	100831444	+	RAMPAGE_only	5	5	8	0.307321	2.521641	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100833277	100847301	MEG3|ENST00000455531.1	+	100833277,100845457	100836300,100847301	0.500000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr18	36807858	36807870	36807869	-	High_confidence	8	8	18	0.691472	3.572469	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.722222
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	59628150	59628259	59628150	-	High_confidence	6	6	55	2.112831	4.522745	chr20	59628033	59628107	LINE|CR1|L3	-	chr20	59626463	59628279	AL121908.1|ENST00000443055.1	-	59626463,59628097	59626949,59628279	0.745455
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr16	75376723	75376772	75376745	-	RAMPAGE_only	11	12	31	1.190868	4.086790	chr16	75376668	75377149	LTR|ERV1|MER66B	+	chr16	75293709	75433485	CFDP1|ENST00000283882.3	-	75293709,75305023,75395089,75411824,75412534,75414577,75433288	75294042,75305182,75395209,75411952,75412754,75414695,75433485	0.838710
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	20423696	20423718	20423703	-	RAMPAGE_only	18	29	73	2.804303	4.800075	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.767123
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	39810033	39810118	39810033	-	High_confidence	49	49	203	7.798267	5.866316	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.866995
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr15	75007499	75007511	75007510	+	RAMPAGE_only	3	3	8	0.307321	2.500000	chr15	75007388	75007556	SINE|Alu|AluJo	-	chr15	75011657	75018467	SCAMP5|ENST00000564779.5	+	75011657,75011791,75012676,75016592,75017869,75018417	75011680,75011846,75012805,75016749,75017971,75018467	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	46266512	46266516	46266514	-	High_confidence	3	5	8	0.307321	2.521641	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.875000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	155343313	155343322	155343321	-	RAMPAGE_only	7	7	13	0.499396	2.855389	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.923077
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	100849287	100849469	100849350	+	RAMPAGE_only	17	18	195	7.490946	6.516309	chr14	100849279	100849392	LINE|L1|L1ME5	+	chr14	100826125	100857624	MEG3|ENST00000522771.8	+	100826125,100828707,100829033,100831420,100836166,100845457,100845875	100826217,100828816,100829749,100831534,100836300,100845533,100857624	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	46064150	46064151	46064150	+	High_confidence	6	6	6	0.230491	2.584963	chr14	46063782	46064404	LTR|ERV1|LTR9	-	chr14	46064158	46501903	LINC00871|NR_102701.1	+	46064158,46210823,46211746,46438180,46449907,46501306	46064216,46210939,46211804,46438250,46449954,46501903	0.833333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr6	21200777	21200826	21200825	+	High_confidence	13	13	30	1.152453	4.323161	chr6	21200835	21201081	LINE|L1|L1MC3	+	chr6	21200811	21231441	CDKAL1|ENST00000476517.1	+	21200811,21201109,21230847	21200892,21201274,21231441	0.966667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr20	37732714	37732747	37732746	+	RAMPAGE_only	10	10	33	1.267699	4.039212	chr20	37732698	37732831	SINE|Alu|AluJb	-	chr20	37694061	37872117	CTNNBL1|ENST00000628103.2	+	37694061,37727301,37732878,37737377,37746467,37757558,37765196,37767952,37777344,37777653,37779186,37802866,37840101,37842338,37859898,37860271,37871924	37694152,37727402,37733067,37737484,37746607,37757656,37765290,37768044,37777417,37777712,37779335,37803048,37840199,37842419,37860036,37860344,37872117	0.939394
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr14	27612576	27612587	27612576	+	High_confidence	60	60	89	3.418945	5.905399	chr14	27612284	27612881	LTR|ERVL|LTR66	+	chr14	27612587	27639636	LINC00645|ENST00000557359.5	+	27612587,27613420,27634243,27636419	27612677,27613496,27634344,27639636	0.831461
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	106278172	106278221	106278172	+	High_confidence	5	5	30	1.152453	4.773557	chr9	106277947	106278267	LINE|RTE-X|L4_C_Mam	+	chr9	106278391	106604795	LINC01505|ENST00000435485.5	+	106278391,106279100,106499486,106500356,106558471,106588376,106603755	106278472,106279190,106499612,106500505,106558583,106588464,106604795	0.766667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr8	58450271	58450327	58450305	+	RAMPAGE_only	3	3	18	0.691472	3.614369	chr8	58449418	58450701	LTR|ERVL-MaLR|MLT1D-int	-	chr8	58411385	58451501	MSTRG.25202.5	+	58411385,58413298,58416849,58430518,58433159,58434394,58439632,58445906,58447388	58411469,58413371,58416953,58430669,58433243,58434504,58439770,58446068,58451501	1.000000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr11	11963588	11963885	11963657	-	RAMPAGE_only	30	51	420	16.134345	6.110107	chr11	11963645	11963694	DNA|hAT-Ac|OldhAT1	-	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.961905
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr9	89479889	89479890	89479889	-	High_confidence	608	610	617	23.702122	5.414735	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89362238	89479890	SEMA4D|ENST00000537934.5	-	89362238,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89418362,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89418437,89455953,89479890	0.949757
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr12	39369871	39369894	39369871	-	RAMPAGE_only	4	4	16	0.614642	3.452820	chr12	39369860	39369969	LINE|Penelope|Penelope1_Vert	+	chr12	39357250	39367927	KIF21A|ENST00000552908.1	-	39357250,39358177,39363097,39366349,39367029,39367882	39357437,39358373,39363213,39366517,39367188,39367927	0.750000
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	201458849	201458853	201458852	+	RAMPAGE_only	3	4	7	0.268906	2.807355	chr2	201458879	201459004	SINE|Alu|FLAM_C	+	chr2	201451795	201480846	STRADB|ENST00000392249.6	+	201451795,201454745,201458783,201469952,201472954,201474646,201475618,201477618,201478086,201478356,201479488,201480007	201451938,201454852,201458864,201470052,201473076,201474755,201475742,201477790,201478191,201478601,201479531,201480846	0.857143
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	44319213	44319304	44319303	-	RAMPAGE_only	6	7	39	1.498189	3.571860	chr2	44319280	44319536	LINE|L1|L1ME4c	+	chr2	44317606	44359749	PREPL|NM_001042386.2	-	44317606,44321826,44322730,44323261,44326711,44328936,44338350,44339146,44342416,44343744,44344519,44346267,44359496	44321445,44321900,44322854,44323411,44326928,44329112,44338536,44339363,44342552,44343951,44344586,44346390,44359749	0.974359
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr19	51354390	51354420	51354390	-	High_confidence	4	4	15	0.576227	3.039149	chr19	51354373	51354482	SINE|MIR|MIR3	-	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.933333
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr1	12572735	12572758	12572757	-	RAMPAGE_only	5	5	16	0.614642	3.506891	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.937500
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr2	45192665	45192666	45192665	-	High_confidence	10	10	12	0.460981	3.277613	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45187169	45192285	LINC01121|ENST00000454673.1	-	45187169,45192139	45189249,45192285	0.666667
spinal_cord_female_fetal_24_weeks_and_male_fetal_22_weeks	chr7	11193340	11193369	11193366	+	High_confidence	11	15	45	1.728680	4.561482	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.711111
spleen_female_adult_51_years	chr14	102083052	102083075	102083074	-	RAMPAGE_only	2	3	8	0.589518	2.521641	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.875000
spleen_female_adult_51_years	chr1	200411799	200411814	200411799	+	High_confidence	11	11	18	1.326415	3.007196	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411799	200475513	AC104461.1|ENST00000634596.1	+	200411799,200473908	200411962,200475513	0.777778
spleen_female_adult_51_years	chr14	101819770	101819782	101819779	+	RAMPAGE_only	6	6	16	1.179036	3.149397	chr14	101819651	101819923	SINE|Alu|AluJb	-	chr14	101761861	101821098	PPP2R5C|ENST00000556068.5	+	101761861,101762904,101786017,101818026	101761920,101762970,101786183,101821098	0.750000
spleen_female_adult_51_years	chr9	121463298	121463299	121463298	-	RAMPAGE_only	5	5	8	0.589518	2.521641	chr9	121463204	121463259	LINE|L2|L2	-	chr9	121444990	121499757	GGTA1P|ENST00000495328.5	-	121444990,121455654,121460103,121461251,121463292,121467842,121479065,121499649	121447597,121455841,121460219,121461317,121463328,121467931,121479334,121499757	0.750000
spleen_female_adult_51_years	chr1	28236218	28236227	28236226	+	High_confidence	4	5	8	0.589518	2.521641	chr1	28236202	28236266	LTR|ERVL|LTR16D1	-	chr1	28236153	28238098	ATP5IF1|ENST00000465645.1	+	28236153,28236360	28236270,28238098	0.875000
spleen_female_adult_51_years	chr19	54616893	54616968	54616967	+	High_confidence	46	49	130	9.579667	6.132762	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54616929	54637556	LILRB1|NM_006669.6	+	54616929,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637556	0.907692
spleen_female_adult_51_years	chr9	89479889	89479890	89479889	-	High_confidence	158	158	165	12.158808	4.832996	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89362238	89479890	SEMA4D|ENST00000537934.5	-	89362238,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89418362,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89418437,89455953,89479890	0.927273
spleen_female_adult_51_years	chr18	46087064	46087100	46087084	-	High_confidence	2	2	8	0.589518	2.521641	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.750000
spleen_female_adult_51_years	chr1	206052882	206052891	206052882	+	High_confidence	10	10	24	1.768554	3.855389	chr1	206052518	206053000	LTR|ERV1|LTR2B	+	chr1	206052844	206062257	BX571818.1|ENST00000582596.5	+	206052844,206060400,206061344,206061661	206053265,206060449,206061397,206062257	0.500000
spleen_female_adult_51_years	chr12	51302234	51302235	51302234	-	RAMPAGE_only	5	5	8	0.589518	2.521641	chr12	51302187	51302333	LINE|L2|L2c	-	chr12	51281037	51324115	BIN2|ENST00000604560.5	-	51281037,51284715,51291590,51295795,51297088,51299202,51299606,51302019,51302685,51303086,51324021	51281528,51284780,51292344,51295878,51297164,51299288,51299714,51302115,51302780,51303141,51324115	0.750000
spleen_female_adult_51_years	chr9	111284810	111284842	111284841	-	High_confidence	10	10	22	1.621174	3.879664	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.954545
spleen_female_adult_51_years	chr12	12927708	12927734	12927733	+	High_confidence	24	24	38	2.800210	4.734512	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.526316
spleen_female_adult_51_years	chr6	2881568	2881569	2881568	-	High_confidence	7	7	8	0.589518	2.521641	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.875000
spleen_female_adult_51_years	chr14	103931726	103931758	103931757	+	RAMPAGE_only	6	6	12	0.884277	3.251629	chr14	103931646	103932201	LTR|ERVL-MaLR|MLT1E2	+	chr14	103928816	103965481	TDRD9|ENST00000496087.5	+	103928816,103945405,103955663,103963078,103965332	103928923,103945525,103955770,103963176,103965481	0.500000
spleen_female_adult_51_years	chr9	123758098	123758126	123758098	-	High_confidence	7	7	21	1.547485	3.272804	chr9	123758093	123758254	SINE|MIR|MIRb	-	chr9	123569544	123757759	DENND1A|ENST00000474676.1	-	123569544,123583168,123609435,123630375,123652012,123667025,123671290,123757702	123569595,123583270,123609481,123630476,123652123,123667079,123671371,123757759	0.761905
spleen_female_adult_51_years	chr9	124505476	124505507	124505506	-	RAMPAGE_only	20	21	53	3.905557	4.647153	chr9	124505450	124505579	SINE|MIR|MIRb	+	chr9	124481358	124507235	STRG.78051.2	-	124481358,124491080,124493029,124500089,124503078,124503293,124504942	124483005,124491228,124493149,124500715,124503220,124503410,124507235	0.981132
spleen_female_adult_51_years	chr2	173282036	173282037	173282036	-	High_confidence	6	6	6	0.442138	2.584963	chr2	173281737	173283149	LTR|ERV1|LTR12C	-	chr2	173197711	173282036	MAP3K20-AS1|ENST00000423106.2	-	173197711,173207546,173209646,173212668,173214279,173215625,173271510,173281681	173198824,173207658,173209945,173212791,173214496,173215836,173271618,173282036	0.666667
spleen_female_adult_51_years	chr19	55255704	55255719	55255704	-	High_confidence	5	5	13	0.957967	3.392747	chr19	55255671	55256025	LINE|L2|L2b	+	chr19	55241476	55255769	STRG.127213.3	-	55241476,55242165,55242375,55245119,55245264,55245491,55246876,55255674	55241639,55242279,55242488,55245185,55245402,55245678,55247109,55255769	0.923077
spleen_female_adult_51_years	chr12	50923951	50923980	50923971	+	High_confidence	14	17	47	3.463418	4.447865	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50924004	50929955	METTL7A|ENST00000550502.1	+	50924004,50925036,50929913	50924080,50925536,50929955	0.595745
spleen_female_adult_51_years	chr14	101731410	101731433	101731413	+	High_confidence	28	28	53	3.905557	5.118427	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.773585
spleen_female_adult_51_years	chr4	152412488	152412529	152412528	-	High_confidence	12	12	29	2.137003	4.418157	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
spleen_female_adult_51_years	chr3	197913291	197913325	197913295	-	High_confidence	34	39	87	6.411008	5.118400	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	1.000000
spleen_female_adult_51_years	chr6	11728399	11728443	11728403	-	High_confidence	9	9	48	3.537108	4.624752	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.645833
spleen_female_adult_51_years	chr8	32927967	32927984	32927967	+	RAMPAGE_only	39	39	119	8.769080	6.100083	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.554622
spleen_female_adult_51_years	chr2	207662375	207662378	207662375	+	High_confidence	131	133	194	14.295811	5.463359	chr2	207662277	207662604	LTR|ERVL-MaLR|MLT1A1	+	chr2	207662374	207667024	LINC01857|ENST00000429730.1	+	207662374,207666680	207662522,207667024	0.902062
spleen_female_adult_51_years	chr17	41108243	41108271	41108243	+	High_confidence	10	10	68	5.010903	4.317201	chr17	41107954	41108546	LTR|ERV1|MER4-int	+	chr17	41108263	41110795	STRG.118555.1	+	41108263,41110003	41108379,41110795	1.000000
spleen_female_adult_51_years	chr17	47067498	47067518	47067498	-	High_confidence	237	254	984	72.510711	5.962361	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.922764
spleen_female_adult_51_years	chr4	184382294	184382309	184382294	-	High_confidence	37	37	56	4.126626	4.530110	chr4	184382179	184382738	LTR|ERVL|LTR67B	+	chr4	184365560	184382306	LOC102723766|NR_125934.1	-	184365560,184365825,184371668,184372338,184376440,184382133	184365646,184365947,184371807,184372480,184376544,184382306	0.571429
spleen_female_adult_51_years	chr4	86453308	86453374	86453341	-	High_confidence	7	7	38	2.800210	3.800919	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453325	MAPK10|ENST00000641313.1	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86354644,86453325	0.894737
spleen_female_adult_51_years	chr14	22086341	22086366	22086365	+	High_confidence	3	3	9	0.663208	2.750000	chr14	22086381	22086487	LINE|CR1|L3b	+	chr14	22086406	22086961	TRAV23DV6|ENST00000390451.2	+	22086406,22086649	22086503,22086961	0.555556
spleen_female_adult_51_years	chr15	90440316	90440340	90440316	+	RAMPAGE_only	2	2	8	0.589518	2.500000	chr15	90440315	90440432	SINE|MIR|MIRb	-	chr15	90388246	90500854	IQGAP1|ENST00000633485.1	+	90388246,90390773,90426109,90429588,90433718,90439331,90440501,90441505,90443393,90448572,90449558,90452774,90453131,90454427,90456151,90466000,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90482701,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390873,90426266,90429666,90433795,90439399,90440615,90441684,90443478,90448736,90449643,90452938,90453292,90454552,90456315,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90482749,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500854	0.625000
spleen_female_adult_51_years	chr22	32580117	32580161	32580160	+	RAMPAGE_only	12	14	33	2.431762	4.513795	chr22	32580186	32580275	DNA|hAT-Charlie|MER58B	+	chr22	32583299	32584204	Z82246.1|ENST00000428201.1	+	32583299,32583876	32583428,32584204	0.787879
spleen_female_adult_51_years	chr21	41426079	41426090	41426089	+	High_confidence	4	5	9	0.663208	2.500000	chr21	41426026	41426113	DNA|hAT-Charlie|MER5A	-	chr21	41426030	41432147	MX1|ENST00000419044.5	+	41426030,41427205,41427754,41430532,41432049	41426161,41427304,41427866,41430608,41432147	0.888889
spleen_female_adult_51_years	chr11	60182437	60182445	60182437	-	High_confidence	2	4	9	0.663208	2.750000	chr11	60182383	60182456	SINE|MIR|MIRb	-	chr11	60173027	60183067	MS4A6A|ENST00000527254.5	-	60173027,60175401,60178259,60178793,60179830,60181580,60182977	60173129,60175611,60178316,60178828,60179965,60181741,60183067	0.555556
spleen_female_adult_51_years	chr11	8776278	8776292	8776278	-	High_confidence	3	3	10	0.736897	2.947703	chr11	8776195	8776350	LINE|L2|L2c	+	chr11	8730980	8776679	ST5|ENST00000533016.1	-	8730980,8750620,8776191	8731209,8750725,8776679	0.600000
spleen_female_adult_51_years	chr8	23243634	23243635	23243634	+	High_confidence	107	107	118	8.695390	6.000633	chr8	23243551	23243732	LTR|ERV1|LTR21A	+	chr8	23243636	23262000	CHMP7|NM_152272.4	+	23243636,23246255,23249209,23255246,23256459,23258032,23258329,23258731,23259065,23260143,23260537	23243844,23246994,23249381,23255432,23256593,23258081,23258449,23258830,23259126,23260323,23262000	0.788136
spleen_female_adult_51_years	chr17	68180906	68180929	68180928	+	High_confidence	4	5	11	0.810587	2.921928	chr17	68179673	68181122	LTR|ERV1|LTR12C	+	chr17	68180586	68181476	STRG.120163.1	+	68180586	68181476	0.727273
spleen_female_adult_51_years	chr4	48805158	48805165	48805164	+	High_confidence	5	5	12	0.884277	2.845351	chr4	48805071	48805471	LTR|ERVL-MaLR|MLT1F	+	chr4	48805211	48850036	OCIAD1|ENST00000504654.5	+	48805211,48830576,48832619,48833400,48842635,48848398,48849946	48805330,48830673,48832682,48833481,48842689,48848446,48850036	0.750000
spleen_female_adult_51_years	chr3	104523272	104523289	104523272	-	High_confidence	21	21	52	3.831867	4.631520	chr3	104522908	104523406	LTR|ERV1|LTR49-int	-	chr3	104521888	104522773	STRG.30222.1	-	104521888	104522773	0.576923
spleen_female_adult_51_years	chr17	78986794	78986820	78986794	+	RAMPAGE_only	10	10	67	4.937213	5.552599	chr17	78986602	78987068	LTR|ERV1|MER4C	-	chr17	78991233	78992184	STRG.120695.1	+	78991233	78992184	0.746269
spleen_female_adult_51_years	chr1	54850845	54851019	54850845	-	RAMPAGE_only	17	17	88	6.484698	5.163088	chr1	54850787	54850913	SINE|MIR|MIR3	-	chr1	54849663	54886890	DHCR24|ENST00000648712.1	-	54849663,54853433,54854036,54865302,54871349,54875092,54875941,54879059,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54879319,54883773,54886890	1.000000
spleen_female_adult_51_years	chr1	60825662	60825686	60825662	-	High_confidence	25	25	49	3.610798	5.028890	chr1	60825624	60825834	SINE|MIR|MIRb	-	chr1	60659630	60825584	AC099792.1|ENST00000423403.1	-	60659630,60662984,60729574,60732446,60733463,60825335	60661470,60663025,60729667,60732508,60733522,60825584	0.551020
spleen_female_adult_51_years	chr1	192173424	192173456	192173424	+	RAMPAGE_only	5	5	13	0.957967	2.968919	chr1	192173286	192175009	LINE|L1|L1M4a2	-	chr1	192158461	192185815	RGS18|NM_130782.2	+	192158461,192159219,192160377,192181291,192184296	192158756,192159321,192160439,192181458,192185815	1.000000
spleen_female_adult_51_years	chr9	20658312	20658347	20658338	+	High_confidence	11	13	48	3.537108	4.444774	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.770833
spleen_female_adult_51_years	chr2	110118141	110118147	110118141	-	RAMPAGE_only	12	12	20	1.473795	3.046439	chr2	110117625	110118184	LINE|L1|L1MD2	-	chr2	110083869	110116566	MALL|NM_005434.4	-	110083869,110087571,110091602,110115687	110085757,110087697,110091770,110116566	0.750000
spleen_female_adult_51_years	chr20	5010312	5010313	5010312	-	High_confidence	53	53	61	4.495075	5.029830	chr20	5010113	5010529	LTR|ERVL|MLT2B2	-	chr20	4852355	5010293	SLC23A2|ENST00000379333.5	-	4852355,4859288,4861947,4862777,4867769,4869905,4873935,4874575,4883641,4884752,4885820,4899554,4902441,4912879,4932454,4970792,5010181	4857204,4859384,4862085,4862907,4867875,4870053,4874092,4874696,4883823,4884823,4885909,4899712,4902558,4912978,4932716,4970919,5010293	0.786885
spleen_female_adult_51_years	chr16	3129668	3129669	3129668	-	RAMPAGE_only	8	8	11	0.810587	2.521928	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3128832	3132042	ZNF213-AS1|ENST00000573447.1	-	3128832,3131746	3129653,3132042	0.727273
spleen_female_adult_51_years	chr12	8567935	8567939	8567938	-	High_confidence	14	27	42	3.094969	4.803056	chr12	8567561	8568746	LTR|ERV1|MER52C	-	chr12	8566480	8567930	STRG.91881.1	-	8566480	8567930	0.761905
spleen_female_adult_51_years	chr16	67183522	67183593	67183522	-	High_confidence	5	5	28	2.063313	4.307355	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.892857
spleen_female_adult_51_years	chr10	100291414	100291459	100291428	-	High_confidence	14	14	107	7.884803	5.699065	chr10	100291357	100291454	SINE|MIR|MIR1_Amn	+	chr10	100288145	100291426	STRG.83220.2	-	100288145,100290014,100291300	100289056,100290138,100291426	0.719626
spleen_female_adult_51_years	chr14	81170372	81170420	81170419	-	High_confidence	27	27	172	12.674636	5.499440	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81165127	81170418	STRG.106856.1	-	81165127,81170108	81165381,81170418	0.941860
spleen_female_adult_51_years	chr2	233357066	233357098	233357066	+	RAMPAGE_only	16	16	45	3.316039	4.446974	chr2	233356905	233357200	LTR|ERVL|LTR33A_	-	chr2	233354571	233392399	DGKD|ENST00000442524.4	+	233354571,233388256,233390402,233392069	233354674,233388367,233390483,233392399	0.511111
spleen_female_adult_51_years	chr14	102370757	102370781	102370760	+	RAMPAGE_only	4	4	11	0.810587	3.277613	chr14	102370462	102370850	LINE|L2|L2b	-	chr14	102363078	102465671	TECPR2|ENST00000558678.1	+	102363078,102376649,102407337,102408487,102414635,102424978,102428249,102431795,102434234,102438021,102440435,102443646,102445805,102449628,102450559,102452393,102465140	102363116,102376940,102407466,102408619,102414793,102425291,102428382,102432128,102435211,102438205,102440609,102443827,102445947,102449869,102450649,102452627,102465671	0.636364
spleen_female_adult_51_years	chr17	56904392	56904426	56904425	-	High_confidence	2	2	6	0.442138	2.584963	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	1.000000
spleen_female_adult_51_years	chr9	114394412	114394413	114394412	-	High_confidence	8	9	12	0.884277	3.251629	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	0.833333
spleen_female_adult_51_years	chr10	19718656	19718657	19718656	-	RAMPAGE_only	10	10	14	1.031656	3.039149	chr10	19718256	19718642	LTR|ERVL-MaLR|MSTB	-	chr10	19710327	19728550	AL157895.1|ENST00000451713.5	-	19710327,19716798,19722113,19722329,19728404	19711288,19716890,19722225,19722422,19728550	0.642857
spleen_female_adult_51_years	chr2	88863320	88863321	88863320	-	RAMPAGE_only	29	34	41	3.021280	4.280694	chr2	88862967	88863276	SINE|Alu|AluY	-	chr2	88857160	88857683	IGKC|ENST00000390237.2	-	88857160	88857683	0.609756
spleen_female_adult_51_years	chr1	110897815	110897876	110897875	+	RAMPAGE_only	15	15	58	4.274005	5.004364	chr1	110897898	110898002	SINE|MIR|MIR	+	chr1	110894308	110899851	CD53|ENST00000497404.1	+	110894308,110894959,110899123	110894401,110895055,110899851	1.000000
spleen_female_adult_51_years	chr12	7575249	7575268	7575249	-	RAMPAGE_only	7	7	22	1.621174	3.584184	chr12	7575005	7575582	LINE|L1|L1MB8	+	chr12	7470812	7503893	CD163|ENST00000359156.8	-	7470812,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7503644	7471397,7479996,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7503893	0.545455
spleen_female_adult_51_years	chr9	121207780	121207803	121207793	+	High_confidence	15	15	50	3.684487	4.954449	chr9	121207755	121207923	SINE|Alu|AluJb	-	chr9	121207793	121265186	GSN|ENST00000434663.5	+	121207793,121209295,121210235,121210783,121231164,121265153	121207897,121209397,121210329,121210867,121231303,121265186	0.580000
spleen_female_adult_51_years	chr10	72355126	72355169	72355145	-	High_confidence	9	9	26	1.915933	4.023465	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.884615
spleen_female_adult_51_years	chr11	77175226	77175303	77175226	+	High_confidence	67	68	266	19.601473	6.159916	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175251	77215238	STRG.88246.2	+	77175251,77177548,77179044,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77194353,77197480,77198494,77199648,77201447,77202299,77203059,77204075,77205461,77206096,77207288,77208429,77208696,77211151,77211820,77212951,77213859,77214606	77175464,77177643,77179129,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77192278,77194524,77197598,77198621,77199818,77201638,77202424,77203217,77204229,77205617,77206202,77207402,77208517,77208803,77211337,77211937,77213035,77213979,77215238	0.879699
spleen_female_adult_51_years	chr16	19487898	19487901	19487898	-	High_confidence	6	6	14	1.031656	2.842371	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.928571
spleen_female_adult_51_years	chr22	39021125	39021161	39021155	+	High_confidence	62	62	242	17.832919	5.947530	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.975207
spleen_female_adult_51_years	chr1	20685262	20685280	20685269	-	High_confidence	10	10	26	1.915933	4.251629	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.807692
spleen_female_adult_51_years	chr7	101990089	101990121	101990120	+	RAMPAGE_only	3	3	9	0.663208	2.641604	chr7	101990076	101990361	SINE|Alu|AluJo	+	chr7	101959389	102104459	CUX1|ENST00000606749.1	+	101959389,102028097,102070338,102097363,102104335	101959601,102028145,102070417,102097501,102104459	1.000000
spleen_female_adult_51_years	chr19	41797149	41797153	41797152	+	High_confidence	11	11	21	1.547485	3.821928	chr19	41797124	41797442	LINE|L2|L2a	-	chr19	41797152	41797941	CEACAM3|ENST00000596544.1	+	41797152,41797588	41797273,41797941	0.714286
spleen_female_adult_51_years	chr1	89272838	89272883	89272859	-	High_confidence	162	172	1750	128.957056	6.252075	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.959429
spleen_female_adult_51_years	chr17	64077481	64077496	64077481	-	RAMPAGE_only	3	7	14	1.031656	3.182006	chr17	64077306	64077742	LINE|L1|L1ME3A	-	chr17	64068236	64080474	ERN1|ENST00000577567.5	-	64068236,64071980,64075174,64079661,64080400	64068291,64072103,64075247,64079734,64080474	0.642857
spleen_female_adult_51_years	chr11	71999605	71999628	71999614	+	High_confidence	17	20	56	4.126626	4.366115	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.946429
spleen_female_adult_51_years	chr6	137218709	137218726	137218725	-	High_confidence	6	6	12	0.884277	3.095795	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.833333
spleen_female_adult_51_years	chr2	189782426	189782429	189782426	-	High_confidence	2	2	6	0.442138	2.584963	chr2	189782212	189782378	LINE|L1|L1MB3	-	chr2	189771311	189783382	STRG.21509.3	-	189771311,189773886,189782421,189783013	189771902,189775716,189782602,189783382	1.000000
spleen_female_adult_51_years	chr22	49657348	49657371	49657355	-	High_confidence	13	13	34	2.505451	4.415458	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.588235
spleen_female_adult_51_years	chr12	110440313	110440374	110440313	-	RAMPAGE_only	4	6	30	2.210692	4.625054	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.900000
spleen_female_adult_51_years	chr7	85106805	85106808	85106805	-	RAMPAGE_only	127	131	231	17.022331	6.208154	chr7	85106637	85107002	LTR|ERVL-MaLR|THE1D	-	chr7	84995552	85108054	STRG.62520.3	-	84995552,85006801,85012781,85015058,85018251,85020232,85022390,85036888,85040672,85042170,85055716,85065423,85068190,85072961,85081516,85097804,85106720	84999865,85006941,85012846,85015216,85018293,85020321,85022613,85037033,85040742,85042285,85055859,85065552,85068284,85073081,85081579,85097965,85108054	0.917749
spleen_female_adult_51_years	chr9	137738510	137738574	137738573	+	High_confidence	7	7	35	2.579141	4.359378	chr9	137738221	137739080	LINE|L1|L1MB3	+	chr9	137738606	137754221	EHMT1|ENST00000495657.5	+	137738606,137743370,137743901,137752330,137754170	137738779,137743528,137744090,137752408,137754221	0.771429
spleen_female_adult_51_years	chr15	32656244	32656245	32656244	+	RAMPAGE_only	4	4	7	0.515828	2.584963	chr15	32656002	32656264	LTR|Gypsy?|LTR88b	-	chr15	32641675	32697098	SCG5|ENST00000300175.8	+	32641675,32643585,32679765,32684556,32691709,32696513	32641778,32643818,32679915,32684669,32691763,32697098	0.571429
spleen_female_adult_51_years	chr7	45940622	45940660	45940646	+	RAMPAGE_only	14	14	55	4.052936	4.337096	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45969656	45980191	AC073115.2|ENST00000416708.1	+	45969656,45978349,45979908	45969809,45978468,45980191	0.636364
spleen_female_adult_51_years	chr22	22336752	22336754	22336752	+	RAMPAGE_only	45	79	79	5.821490	5.575225	chr22	22331689	22336920	LINE|L1|L1PA8	+	chr22	22758699	22895825	STRG.132587.5	+	22758699,22758903,22893776,22895374	22758786,22759206,22893818,22895825	0.708861
spleen_female_adult_51_years	chr12	56642458	56642463	56642458	-	RAMPAGE_only	3	3	8	0.589518	2.521641	chr12	56642329	56642417	SINE|Alu|AluJb	-	chr12	56638174	56645279	ATP5F1B|ENST00000548474.2	-	56638174,56639105,56645170	56638423,56639196,56645279	0.875000
spleen_female_adult_51_years	chr12	643625	643636	643627	-	High_confidence	17	31	59	4.347695	4.661471	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.898305
spleen_female_adult_51_years	chr17	64371089	64371090	64371089	-	High_confidence	16	16	16	1.179036	3.702820	chr17	64371085	64371372	LINE|L1|L1M5	+	chr17	64363347	64370415	PECAM1|ENST00000566422.1	-	64363347,64369749,64370210	64363397,64370025,64370415	0.812500
spleen_female_adult_51_years	chr1	26832019	26832023	26832019	+	High_confidence	12	12	21	1.547485	3.576618	chr1	26831803	26832078	LINE|L2|L2b	+	chr1	26832019	26851174	ZDHHC18|ENST00000534643.5	+	26832019,26832446,26848607,26850300,26850557,26851128	26832072,26832607,26848757,26850438,26850606,26851174	0.571429
spleen_female_adult_51_years	chr17	4143196	4143200	4143199	+	High_confidence	42	44	84	6.189939	5.013669	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.988095
spleen_female_adult_51_years	chr1	89272627	89272665	89272664	-	High_confidence	5	5	14	1.031656	3.085055	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89262697	89272804	GBP5|ENST00000443807.1	-	89262697,89263735,89264685,89266345,89266956,89267416,89268728,89269365	89262785,89263948,89264966,89266588,89267153,89267526,89268856,89272804	0.928571
spleen_female_adult_51_years	chr7	100349884	100349885	100349884	+	RAMPAGE_only	8	8	11	0.810587	3.027169	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336124	100351900	STRG.63448.7	+	100336124,100338178,100338772,100345864,100349716,100351251	100336337,100338264,100338889,100345968,100349887,100351900	0.909091
spleen_female_adult_51_years	chr8	65981105	65981106	65981105	+	RAMPAGE_only	5	5	7	0.515828	2.807355	chr8	65980910	65981286	LTR|ERVL-MaLR|THE1B	+	chr8	66021555	66100520	DNAJC5B|NM_033105.4	+	66021555,66043487,66051530,66076659,66080376,66099936	66021705,66043611,66051666,66076873,66080548,66100520	0.571429
spleen_female_adult_51_years	chr19	7642315	7642328	7642315	+	High_confidence	4	10	23	1.694864	3.153572	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.782609
spleen_female_adult_51_years	chr11	108225493	108225519	108225493	+	High_confidence	3	3	8	0.589518	2.500000	chr11	108225464	108225775	SINE|Alu|AluSg	-	chr11	108224782	108231594	ATM|ENST00000638443.1	+	108224782,108227594,108227775,108229177,108231487	108224871,108227696,108227888,108230912,108231594	1.000000
spleen_female_adult_51_years	chr16	53519545	53519551	53519550	-	RAMPAGE_only	12	12	22	1.621174	3.845351	chr16	53519391	53519715	LINE|L2|L2a	+	chr16	53495077	53504411	AKTIP|ENST00000565408.5	-	53495077,53495261,53498390,53500217,53504328	53495173,53495326,53498596,53500329,53504411	0.500000
spleen_female_adult_51_years	chr12	46266629	46266670	46266638	-	High_confidence	4	4	10	0.736897	2.721928	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.700000
spleen_female_adult_51_years	chr6	119491270	119491311	119491301	-	High_confidence	134	149	479	35.297389	6.466142	chr6	119489191	119492975	LINE|L1|L1PB1	+	chr6	119466385	119491317	STRG.54963.1	-	119466385	119491317	0.974948
spleen_female_adult_51_years	chr14	75025217	75025244	75025217	-	RAMPAGE_only	9	9	63	4.642454	4.792690	chr14	75025064	75026121	LINE|L2|L2c	+	chr14	75015486	75023018	MLH3|ENST00000554697.5	-	75015486,75017007,75018828,75022813,75022994	75015862,75017201,75018980,75022892,75023018	0.841270
spleen_female_adult_51_years	chr1	166850054	166850084	166850083	+	RAMPAGE_only	3	3	7	0.515828	2.807355	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166845685	166856344	STRG.8531.4	+	166845685,166848937	166847592,166856344	1.000000
spleen_female_adult_51_years	chr2	111480260	111480263	111480260	-	High_confidence	5	5	9	0.663208	2.500000	chr2	111480041	111480456	LTR|ERVL-MaLR|MLT1C	-	chr2	111429322	111480261	MIR4435-2HG|ENST00000442293.5	-	111429322,111479906,111480168	111429620,111480061,111480261	0.555556
spleen_female_adult_51_years	chr18	2589112	2589121	2589120	+	RAMPAGE_only	14	20	32	2.358072	4.288910	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	1.000000
spleen_female_adult_51_years	chr5	150640005	150640051	150640050	+	High_confidence	23	24	68	5.010903	5.225269	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150640060	150659220	STRG.47750.4	+	150640060,150647943,150656403	150640134,150650303,150659220	1.000000
spleen_female_adult_51_years	chr8	140344897	140344913	140344907	-	RAMPAGE_only	4	4	11	0.810587	2.721928	chr8	140344556	140344892	LINE|L2|L2a	-	chr8	139730344	140450930	TRAPPC9|ENST00000520857.5	-	139730344,139731978,139885878,139910146,139988725,140023936,140221458,140252776,140275657,140283888,140287607,140290992,140300468,140311247,140360049,140370963,140397619,140405576,140435111,140439051,140450789	139731228,139732202,139885969,139910300,139988836,140024079,140221583,140252929,140275821,140284021,140287734,140291078,140300614,140311374,140360193,140371180,140397745,140405698,140435240,140439197,140450930	0.909091
spleen_female_adult_51_years	chr8	39017063	39017078	39017077	+	High_confidence	15	16	27	1.989623	4.209867	chr8	39016988	39017120	SINE|MIR|MIRb	-	chr8	39017035	39021713	ADAM9|ENST00000481058.1	+	39017035,39018852,39021642	39017414,39018918,39021713	0.740741
spleen_female_adult_51_years	chrX	115647957	115648001	115648000	+	RAMPAGE_only	2	2	10	0.736897	3.169925	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.900000
spleen_female_adult_51_years	chr11	27218830	27218860	27218830	-	RAMPAGE_only	9	9	27	1.989623	3.979098	chr11	27218789	27219203	LTR|ERV1|MER51B	+	chr11	27217151	27220102	BBOX1-AS1|ENST00000531363.1	-	27217151,27219686	27217480,27220102	0.518519
spleen_female_adult_51_years	chr8	144853500	144853556	144853555	-	High_confidence	11	14	74	5.453041	5.582916	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	0.945946
spleen_female_adult_51_years	chr1	25562793	25562794	25562793	+	High_confidence	20	20	29	2.137003	4.253434	chr1	25562741	25562929	SINE|MIR|MIRb	+	chr1	25562815	25567000	LDLRAP1|ENST00000484476.5	+	25562815,25563660,25565172,25566847	25563153,25563791,25565207,25567000	0.724138
spleen_female_adult_51_years	chr8	2726958	2726963	2726962	+	High_confidence	3	3	7	0.515828	2.521641	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.714286
spleen_female_adult_51_years	chr11	9716951	9716980	9716977	+	RAMPAGE_only	6	6	19	1.400105	3.530493	chr11	9716634	9717133	LINE|L2|L2	-	chr11	9720065	9738259	SWAP70|ENST00000534662.1	+	9720065,9724657,9728052,9729342,9732528,9738212	9720483,9724885,9728199,9729451,9732710,9738259	0.842105
spleen_female_adult_51_years	chr16	65053820	65053925	65053820	-	RAMPAGE_only	20	20	59	4.347695	4.723011	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.745763
spleen_female_adult_51_years	chr5	150114755	150114766	150114765	-	RAMPAGE_only	6	6	12	0.884277	3.188722	chr5	150114760	150114896	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.916667
spleen_female_adult_51_years	chr1	152143705	152143728	152143705	-	RAMPAGE_only	4	4	9	0.663208	2.750000	chr1	152143120	152143960	LINE|L1|L1MA10	-	chr1	152106316	152115454	TCHH|ENST00000614923.1	-	152106316,152113942,152115390	152113078,152114111,152115454	0.555556
spleen_female_adult_51_years	chr19	58312242	58312243	58312242	+	RAMPAGE_only	8	8	8	0.589518	2.750000	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58305376	58315202	STRG.127489.3	+	58305376,58306087,58312196	58305445,58306216,58315202	1.000000
spleen_female_adult_51_years	chr13	93455154	93455192	93455184	+	RAMPAGE_only	5	7	23	1.694864	3.675311	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.826087
spleen_female_adult_51_years	chr2	47369479	47369490	47369479	+	High_confidence	3	3	8	0.589518	2.500000	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369474	47375254	EPCAM|ENST00000474691.1	+	47369474,47373462,47375233	47369581,47374048,47375254	0.875000
spleen_female_adult_51_years	chr8	39083065	39083066	39083065	+	RAMPAGE_only	8	8	8	0.589518	3.000000	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.750000
spleen_female_adult_51_years	chr10	35449689	35449725	35449700	+	RAMPAGE_only	32	33	171	12.600947	5.948021	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.666667
spleen_female_adult_51_years	chr2	54788170	54788174	54788170	+	RAMPAGE_only	8	10	18	1.326415	3.461320	chr2	54787817	54788368	LTR|ERVL|MER73	+	chr2	54725011	54972021	EML6|NM_001039753.2	+	54725011,54813231,54816786,54820393,54827565,54829341,54844046,54847485,54849961,54853642,54859533,54863782,54866765,54869180,54871499,54879546,54891053,54892453,54894914,54895272,54899640,54903043,54903370,54910953,54916758,54928312,54928624,54948881,54950649,54952593,54953982,54957789,54959103,54960219,54962522,54963985,54964570,54966999,54968127,54968667,54970070	54725258,54813391,54816885,54820462,54827751,54829477,54844248,54847623,54850218,54853855,54859701,54863889,54866884,54869367,54871605,54879640,54891154,54892656,54895026,54895400,54899782,54903196,54903502,54911042,54916935,54928514,54928751,54948960,54950779,54952692,54954156,54957998,54959261,54960334,54962711,54964158,54964733,54967103,54968281,54968768,54972021	0.888889
spleen_female_adult_51_years	chr13	102846620	102846634	102846620	+	High_confidence	5	5	13	0.957967	3.392747	chr13	102846508	102846823	DNA|TcMar-Tigger|MER2	-	chr13	102846111	102868257	STRG.102840.3	+	102846111,102852117,102853756,102856051,102858274,102861506,102862029,102865666,102866261,102866631,102868112	102846354,102852293,102854374,102856112,102858418,102861714,102863103,102865911,102866381,102866845,102868257	0.538462
spleen_female_adult_51_years	chr2	94622487	94622508	94622487	+	High_confidence	4	4	13	0.957967	2.653544	chr2	94621497	94622739	LTR|ERV1|LTR12C	-	chr2	94622592	94623556	STRG.17430.1	+	94622592	94623556	0.538462
spleen_female_adult_51_years	chr21	38229925	38229934	38229927	+	High_confidence	27	39	60	4.421385	4.768994	chr21	38229909	38234139	LINE|L1|L1MB8	-	chr21	38229926	38299731	STRG.131337.1	+	38229926,38291605,38296925,38299243	38230023,38291747,38297023,38299731	0.550000
spleen_female_adult_51_years	chr5	14572926	14572965	14572964	-	High_confidence	34	34	70	5.158282	5.314718	chr5	14572729	14573102	LTR|ERVL-MaLR|MLT1A0	-	chr5	14572136	14572954	STRG.41611.1	-	14572136	14572954	0.885714
spleen_female_adult_51_years	chr14	77565756	77565757	77565756	-	RAMPAGE_only	8	9	9	0.663208	2.750000	chr14	77565271	77565950	LINE|L1|L1MC4a	+	chr14	77552119	77557321	SPTLC2|ENST00000554365.1	-	77552119,77555299,77557040	77552222,77555519,77557321	0.555556
spleen_female_adult_51_years	chr8	90006002	90006031	90006030	+	RAMPAGE_only	5	5	15	1.105346	3.006239	chr8	90005695	90006172	LTR|ERVL-MaLR|MSTB1	-	chr8	90001475	90044985	STRG.70409.5	+	90001475,90018908,90019085,90020908,90036840,90042727,90044848	90017326,90018966,90019172,90021056,90036940,90042800,90044985	1.000000
spleen_female_adult_51_years	chr4	152100762	152100793	152100789	+	High_confidence	6	6	33	2.431762	4.238609	chr4	152100450	152100876	LTR|ERVL|LTR16	-	chr4	152100817	152104720	LOC100996286|NR_121627.1	+	152100817,152101483,152103626	152101218,152101580,152104720	0.818182
spleen_female_adult_51_years	chr8	143558019	143558020	143558019	+	High_confidence	29	29	29	2.137003	4.116265	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.896552
spleen_female_adult_51_years	chr9	114345863	114345868	114345863	-	High_confidence	4	4	9	0.663208	2.725481	chr9	114345713	114345851	DNA|hAT-Charlie|Charlie17a	-	chr9	114336130	114346774	AKNA|ENST00000492875.1	-	114336130,114341532,114342008,114343707,114346668	114337306,114341725,114342125,114346009,114346774	1.000000
spleen_female_adult_51_years	chr13	37091087	37091122	37091121	+	RAMPAGE_only	67	68	169	12.453567	6.120425	chr13	37090806	37091149	DNA|hAT-Charlie|Charlie17b	+	chr13	37104388	37110918	STRG.100496.1	+	37104388	37110918	0.828402
spleen_female_adult_51_years	chr2	3536820	3536867	3536822	-	High_confidence	2	3	18	1.326415	4.087463	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3533223	3536869	AC108488.1|ENST00000438482.1	-	3533223,3534112,3536723	3533848,3534255,3536869	0.500000
spleen_female_adult_51_years	chr22	32530290	32530291	32530290	-	High_confidence	10	10	10	0.736897	2.846439	chr22	32530255	32530413	SINE|MIR|MIRb	-	chr22	32518051	32530202	SYN3|ENST00000459990.5	-	32518051,32528873,32530046	32518334,32529008,32530202	0.900000
spleen_female_adult_51_years	chr3	72100380	72100417	72100416	-	High_confidence	3	3	14	1.031656	3.521641	chr3	72100285	72100568	DNA|hAT-Charlie|MER102b	-	chr3	72060763	72100303	LINC00877|ENST00000498432.5	-	72060763,72099903,72100168	72061094,72100010,72100303	0.642857
spleen_female_adult_51_years	chr2	73640851	73640884	73640870	+	High_confidence	8	8	23	1.694864	3.754442	chr2	73640769	73640932	LTR|ERVL-MaLR|MLT1J2	+	chr2	73640629	73642175	STRG.16706.7	+	73640629	73642175	0.826087
spleen_female_adult_51_years	chr1	6223864	6223865	6223864	-	RAMPAGE_only	5	5	8	0.589518	2.521641	chr1	6223652	6223847	SINE|MIR|MIRb	-	chr1	6221192	6235940	ICMT|ENST00000343813.9	-	6221192,6231901,6233473,6234885,6235716	6225262,6232119,6233643,6234974,6235940	0.875000
spleen_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	580	723	1291	95.133463	4.879170	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.986832
spleen_female_adult_51_years	chr12	8567589	8567600	8567589	-	RAMPAGE_only	4	4	11	0.810587	2.845351	chr12	8567561	8568746	LTR|ERV1|MER52C	-	chr12	8533304	8540963	CLEC4E|ENST00000299663.7	-	8533304,8536089,8537114,8539216,8539854,8540760	8534809,8536205,8537266,8539306,8539947,8540963	1.000000
spleen_female_adult_51_years	chr8	11864408	11864439	11864408	-	RAMPAGE_only	7	7	19	1.400105	4.247928	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.789474
spleen_female_adult_51_years	chr19	48868595	48868617	48868595	-	High_confidence	183	184	788	58.067520	7.482435	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.996193
spleen_female_adult_51_years	chr6	6587204	6587362	6587361	-	High_confidence	80	89	165	12.158808	6.423659	chr6	6587337	6587525	DNA|hAT-Charlie|MER5A	-	chr6	6560945	6587387	STRG.49449.2	-	6560945,6569417,6587187	6564388,6569489,6587387	0.606061
spleen_female_adult_51_years	chr15	57281628	57281647	57281646	+	High_confidence	12	12	26	1.915933	3.938722	chr15	57281447	57281985	DNA|hAT-Charlie|MER1A	+	chr15	57281646	57286420	TCF12|ENST00000561454.1	+	57281646,57282444,57286156	57281792,57282598,57286420	0.884615
spleen_female_adult_51_years	chr8	85378112	85378113	85378112	-	High_confidence	1578	1654	1685	124.167223	5.010125	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.964985
spleen_female_adult_51_years	chr21	33931121	33931225	33931224	+	High_confidence	20	20	89	6.558387	4.497012	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.820225
spleen_female_adult_51_years	chr12	46243208	46243233	46243208	-	RAMPAGE_only	3	3	8	0.589518	2.521641	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.875000
spleen_female_adult_51_years	chr17	2975660	2975665	2975664	+	RAMPAGE_only	3	3	8	0.589518	2.807355	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.500000
spleen_female_adult_51_years	chr16	12539371	12539372	12539371	+	RAMPAGE_only	6	6	8	0.589518	2.750000	chr16	12539107	12540236	LINE|L1|L1MD3	-	chr16	11976737	12574289	SNX29|ENST00000566228.5	+	11976737,11999296,12002990,12027319,12042896,12046383,12048371,12051846,12061527,12069056,12078832,12126632,12129629,12199600,12277932,12356162,12398445,12403447,12477718,12524701,12568505	11976813,11999358,12003043,12027444,12043077,12046454,12048620,12052222,12061646,12069132,12078915,12126696,12129758,12199683,12278036,12356279,12398501,12403529,12477859,12524841,12574289	0.875000
spleen_female_adult_51_years	chr3	128651525	128651529	128651528	-	High_confidence	6	6	10	0.736897	2.725481	chr3	128651508	128651582	LINE|L1|L1MC4a	+	chr3	128632120	128651529	RPN1|ENST00000495462.5	-	128632120,128637798,128644918,128651372	128632157,128638105,128644983,128651529	0.900000
spleen_female_adult_51_years	chr19	11196105	11196143	11196131	-	High_confidence	7	7	26	1.915933	3.715454	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.961538
spleen_female_adult_51_years	chr17	4126909	4126953	4126914	-	High_confidence	4	4	21	1.547485	3.884184	chr17	4126672	4126993	SINE|Alu|AluSz6	+	chr17	4123337	4127092	STRG.116420.13	-	4123337,4126509	4124051,4127092	0.523810
spleen_female_adult_51_years	chr19	51795132	51795169	51795162	+	High_confidence	6	6	17	1.252726	3.702820	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.882353
spleen_female_adult_51_years	chr11	57005860	57005865	57005860	-	RAMPAGE_only	2	3	6	0.442138	2.584963	chr11	57005052	57006593	LTR|ERV1|MER52A	-	chr11	56964661	57092232	STRG.86838.8	-	56964661,57091973	57005902,57092232	1.000000
spleen_female_adult_51_years	chr1	53368122	53368143	53368142	-	High_confidence	9	11	19	1.400105	3.169925	chr1	53367866	53368194	LINE|L2|L2b	+	chr1	53366667	53368245	AC119428.2|ENST00000449958.1	-	53366667,53368005	53367277,53368245	0.947368
spleen_female_adult_51_years	chr11	41497434	41497482	41497434	-	RAMPAGE_only	7	9	33	2.431762	4.184863	chr11	41497209	41497470	DNA|TcMar-Tigger|Tigger7	+	chr11	40648223	41459636	LRRC4C|ENST00000534577.1	-	40648223,40933634,41222796,41459430	40648278,40933723,41223008,41459636	0.727273
spleen_female_adult_51_years	chr2	28997485	28997507	28997506	+	High_confidence	11	11	19	1.400105	3.787144	chr2	28997313	28997521	LINE|L2|L2b	+	chr2	28997473	29018238	STRG.14348.1	+	28997473,28998142,28999180,29002535,29003491,29011454,29014394,29017153,29017791	28997856,28998253,28999468,29002747,29003682,29011501,29014561,29017304,29018238	1.000000
spleen_female_adult_51_years	chr9	185984	186024	186023	-	RAMPAGE_only	4	4	12	0.884277	2.855389	chr9	185804	186030	LTR|ERVL-MaLR|MLT1A1	-	chr9	121040	179147	CBWD1|ENST00000377400.8	-	121040,121960,123216,123385,134978,146101,152033,154708,156480,162431,163977,172080,173269,175697,178815	121573,122090,123282,123454,135030,146158,152078,154795,156527,162469,164037,172172,173366,175784,179147	0.583333
spleen_female_adult_51_years	chr16	21116430	21116485	21116438	+	High_confidence	6	7	34	2.505451	3.369278	chr16	21116237	21116619	LTR|ERVL-MaLR|THE1C	+	chr16	21116745	21117004	STRG.113969.1	+	21116745	21117004	0.705882
spleen_female_adult_51_years	chr9	37187473	37187484	37187473	+	RAMPAGE_only	3	3	14	1.031656	3.521641	chr9	37187210	37187548	DNA|hAT-Charlie|MER1B	-	chr9	37144931	37356980	ZCCHC7|ENST00000488607.5	+	37144931,37147361,37302187,37304187,37305543,37327798,37349356,37354709,37356834	37144997,37147445,37302231,37304313,37305714,37327834,37349452,37354824,37356980	0.500000
spleen_female_adult_51_years	chr19	55255760	55255769	55255768	-	High_confidence	9	9	30	2.210692	4.306257	chr19	55255671	55256025	LINE|L2|L2b	+	chr19	55241476	55255769	STRG.127213.3	-	55241476,55242165,55242375,55245119,55245264,55245491,55246876,55255674	55241639,55242279,55242488,55245185,55245402,55245678,55247109,55255769	0.866667
spleen_female_adult_51_years	chr8	57746128	57746129	57746128	+	High_confidence	166	169	173	12.748326	3.633535	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.965318
spleen_female_adult_51_years	chr1	222892292	222892330	222892292	+	RAMPAGE_only	3	3	9	0.663208	2.725481	chr1	222892051	222892649	DNA|hAT?|MER99	-	chr1	222872270	222979862	DISP1|ENST00000360254.3	+	222872270,222928429,222942806,222979622	222872432,222928570,222943332,222979862	0.777778
spleen_female_adult_51_years	chr5	170036552	170036553	170036552	+	RAMPAGE_only	6	6	8	0.589518	2.500000	chr5	170036590	170036728	LINE|L2|L2c	+	chr5	169747425	170083377	STRG.48272.3	+	169747425,169759704,169761518,169803057,169840756,169983067,169985827,169996085,170008496,170008687,170018959,170027862,170034398,170036514,170041054,170042012,170045815,170047509,170050255,170055304,170056683,170067509,170069136,170075946,170077709,170078974,170080162,170081841,170082795	169747504,169759775,169761625,169803206,169840852,169983166,169985922,169996164,170008597,170008746,170019108,170027948,170034555,170036555,170041145,170042132,170045905,170047614,170050397,170055386,170057666,170067686,170069220,170076084,170077837,170079146,170080283,170081984,170083377	1.000000
spleen_female_adult_51_years	chr9	31334984	31334987	31334984	-	High_confidence	106	106	173	12.748326	6.067494	chr9	31334699	31335791	LTR|ERV1|MER52A	-	chr9	31118041	31335110	STRG.74134.1	-	31118041,31125437,31128468,31233746,31234444,31235293,31334656	31120012,31125583,31128558,31233840,31234553,31235419,31335110	0.757225
spleen_female_adult_51_years	chr22	41753565	41753613	41753612	+	High_confidence	8	9	28	2.063313	4.039149	chr22	41753560	41753778	SINE|Alu|AluSx	-	chr22	41753582	41758478	MEI1|ENST00000460702.1	+	41753582,41758364	41754046,41758478	0.892857
spleen_female_adult_51_years	chr3	130548662	130548683	130548662	+	High_confidence	10	10	17	1.252726	3.292770	chr3	130548092	130549017	LINE|L1|L1MC4	-	chr3	130548675	130565569	STRG.31585.1	+	130548675,130560123,130560333,130563067,130564993	130548838,130560202,130560428,130563664,130565569	1.000000
spleen_female_adult_51_years	chr8	30812428	30812454	30812453	-	High_confidence	4	4	10	0.736897	2.921928	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	1.000000
spleen_female_adult_51_years	chr11	117185950	117186007	117185994	+	High_confidence	10	10	35	2.579141	4.536286	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.857143
spleen_female_adult_51_years	chr17	68944731	68944838	68944801	+	RAMPAGE_only	36	38	180	13.264154	3.506471	chr17	68944814	68945164	LINE|L1|L1MCc	+	chr17	69004713	69018323	ABCA9-AS1|ENST00000458677.1	+	69004713,69011982,69012251,69018103	69004793,69012103,69012353,69018323	0.911111
spleen_female_adult_51_years	chr14	63480891	63480905	63480902	-	RAMPAGE_only	6	6	16	1.179036	3.006239	chr14	63480748	63480947	DNA|hAT-Charlie|Charlie2a	+	chr14	63384530	63453776	PPP2R5E|ENST00000556150.1	-	63384530,63389611,63393819,63395225,63396585,63415139,63421992,63453688	63384571,63389731,63393928,63395285,63396716,63415232,63422094,63453776	0.812500
spleen_female_adult_51_years	chr19	49867876	49867885	49867876	-	High_confidence	4	5	14	1.031656	3.392747	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49863730	49867880	PNKP|ENST00000636214.1	-	49863730,49863963,49864178,49864323,49865126,49866398,49867053,49867678	49863760,49864071,49864236,49864403,49865242,49866445,49867217,49867880	0.642857
spleen_female_adult_51_years	chr6	2881285	2881286	2881285	-	High_confidence	7	7	7	0.515828	2.521641	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
spleen_female_adult_51_years	chr6	109325708	109325753	109325708	+	RAMPAGE_only	17	17	35	2.579141	4.594672	chr6	109324446	109326053	LINE|L2|L2a	-	chr6	109294308	109355046	CCDC162P|ENST00000638844.1	+	109294308,109295526,109300230,109305958,109307981,109309501,109314062,109315279,109316847,109329002,109336367,109337395,109338447,109340901,109341301,109342398,109343986,109348426,109352786,109354847	109294458,109295692,109300369,109306112,109308077,109309654,109314292,109315418,109316968,109329112,109336517,109337449,109338615,109341054,109341433,109342551,109344196,109348547,109352914,109355046	0.628571
spleen_female_adult_51_years	chr11	287308	287315	287308	+	High_confidence	3	3	8	0.589518	2.500000	chr11	287048	287379	LINE|L2|L2a	-	chr11	287750	288789	STRG.84389.1	+	287750	288789	1.000000
spleen_female_adult_51_years	chr2	143070964	143071000	143070964	+	RAMPAGE_only	55	55	87	6.411008	5.007526	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143091361	143238352	ARHGAP15|ENST00000409869.5	+	143091361,143092156,143155476,143202133,143216383,143228580,143235945	143091422,143092258,143155655,143202202,143216445,143228668,143238352	0.597701
spleen_female_adult_51_years	chr1	169662003	169662004	169662003	+	High_confidence	27	27	32	2.358072	3.652115	chr1	169661033	169662412	LTR|ERV1|LTR12C	+	chr1	169662006	169853085	C1orf112|ENST00000498289.5	+	169662006,169683468,169683755,169783810,169784876,169798856,169800882,169802620,169803168,169804111,169806003,169807790,169821678,169823407,169827050,169827710,169829262,169830258,169830695,169832416,169836926,169842416,169843673,169847689,169849499,169850264,169850453,169851816,169852789	169662523,169683625,169683932,169783928,169784913,169798958,169800971,169802725,169803309,169804240,169806088,169807929,169821759,169823472,169827199,169827840,169829449,169830341,169830747,169832506,169837112,169842539,169843769,169847803,169849604,169850327,169850566,169851936,169853085	0.843750
spleen_female_adult_51_years	chr10	61466019	61466037	61466025	+	RAMPAGE_only	4	4	21	1.547485	3.431624	chr10	61465834	61466229	LTR|ERVL-MaLR|MLT1B	+	chr10	61452638	61493433	TMEM26-AS1|NR_120643.1	+	61452638,61467497,61481839,61482789,61483831,61493295	61453289,61467592,61481950,61482825,61484045,61493433	0.619048
spleen_female_adult_51_years	chr11	114318596	114318639	114318596	+	RAMPAGE_only	6	6	19	1.400105	3.721612	chr11	114318527	114318663	DNA|hAT-Charlie|Charlie30a	+	chr11	114317087	114330124	STRG.90451.1	+	114317087	114330124	0.894737
spleen_female_adult_51_years	chr9	31335106	31335130	31335108	-	High_confidence	37	69	170	12.527257	6.145541	chr9	31334699	31335791	LTR|ERV1|MER52A	-	chr9	31118041	31335110	STRG.74134.1	-	31118041,31125437,31128468,31233746,31234444,31235293,31334656	31120012,31125583,31128558,31233840,31234553,31235419,31335110	0.782353
spleen_female_adult_51_years	chr9	79824527	79824530	79824527	+	RAMPAGE_only	7	7	19	1.400105	3.725481	chr9	79823628	79824933	LINE|L2|L2a	-	chr9	79975022	80034555	LINC01507|NR_121212.1	+	79975022,79975553,79989956,80030583,80034300	79975222,79975831,79990064,80030769,80034555	0.631579
spleen_female_adult_51_years	chr1	148712517	148712534	148712533	-	High_confidence	30	30	83	6.116249	5.544710	chr1	148712528	148712895	LTR|ERVL-MaLR|MLT1M	+	chr1	148708063	148712567	STRG.7409.2	-	148708063	148712567	0.554217
spleen_female_adult_51_years	chr2	227164620	227164621	227164620	+	High_confidence	21	21	27	1.989623	4.384517	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.592593
spleen_female_adult_51_years	chr5	178668010	178668031	178668010	-	High_confidence	7	8	24	1.768554	3.803509	chr5	178667978	178668059	LINE|L2|L2	+	chr5	178667490	178668015	STRG.48618.1	-	178667490	178668015	0.833333
spleen_female_adult_51_years	chr3	157487448	157487449	157487448	-	RAMPAGE_only	12	12	12	0.884277	3.251629	chr3	157486755	157488128	LINE|L1|L1ME3C	+	chr3	157460094	157489356	VEPH1|ENST00000482434.1	-	157460094,157470313,157489054	157460355,157470529,157489356	0.916667
spleen_female_adult_51_years	chr4	88456753	88456780	88456779	-	RAMPAGE_only	6	6	20	1.473795	3.103702	chr4	88456468	88456764	SINE|Alu|AluY	-	chr4	88411788	88455687	STRG.37926.1	-	88411788,88419301,88419573,88420355,88455217	88412122,88419408,88419712,88420428,88455687	0.700000
spleen_female_adult_51_years	chr1	111128023	111128033	111128023	-	High_confidence	16	16	31	2.284382	4.306891	chr1	111127946	111128007	DNA|hAT-Charlie|Charlie7a	-	chr1	111118123	111128027	DRAM2|ENST00000461449.5	-	111118123,111118804,111119876,111120515,111126226,111127982	111118267,111118897,111119959,111120693,111126294,111128027	0.677419
spleen_female_adult_51_years	chr8	143018394	143018434	143018394	-	High_confidence	16	16	73	5.379351	4.829548	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.767123
spleen_female_adult_51_years	chr10	7186614	7186648	7186629	-	RAMPAGE_only	4	5	15	1.105346	3.235926	chr10	7186480	7186609	SINE|Alu|AluJo	-	chr10	7158623	7409341	SFMBT2|ENST00000361972.8	-	7158623,7170927,7171894,7172494,7175989,7188623,7197547,7200413,7202479,7205814,7220410,7227854,7243557,7248547,7276891,7283903,7285865,7367648,7370280,7381798,7409301	7163910,7171056,7172158,7172661,7176165,7188733,7197687,7200484,7202522,7205928,7220537,7227937,7243705,7248649,7276989,7284150,7285954,7367889,7370375,7381949,7409341	0.933333
spleen_female_adult_51_years	chr2	164761350	164761404	164761403	-	High_confidence	16	17	147	10.832393	6.036375	chr2	164761399	164761470	SINE|Alu|AluSp	+	chr2	164729929	164761851	STRG.20182.10	-	164729929,164743686,164761282	164730115,164743875,164761851	0.578231
spleen_female_adult_51_years	chr4	86453161	86453207	86453161	-	High_confidence	22	26	218	16.064365	5.212143	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86159297	86453162	MAPK10|ENST00000642049.1	-	86159297,86194318,86354529,86370713,86453029	86159467,86194407,86354644,86370867,86453162	0.839450
spleen_female_adult_51_years	chr2	6866552	6866553	6866552	-	High_confidence	10	10	12	0.884277	2.732159	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.750000
spleen_female_adult_51_years	chr13	27445105	27445120	27445105	-	RAMPAGE_only	5	6	11	0.810587	3.321928	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.818182
spleen_female_adult_51_years	chr4	70676929	70676951	70676950	-	RAMPAGE_only	13	15	51	3.758177	4.733714	chr4	70676811	70677107	SINE|Alu|AluSz	-	chr4	70656319	70666975	JCHAIN|ENST00000510437.5	-	70656319,70657210,70662091,70666426,70666848	70656539,70657291,70662215,70666514,70666975	0.843137
spleen_female_adult_51_years	chr13	30376944	30376965	30376953	-	High_confidence	11	14	67	4.937213	5.281295	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30367068	30376964	STRG.100194.3	-	30367068,30372284,30375466,30376826	30367717,30372374,30375776,30376964	0.716418
spleen_female_adult_51_years	chr22	44181183	44181184	44181183	+	High_confidence	22	23	30	2.210692	3.748394	chr22	44181132	44181213	LINE|L2|L2a	-	chr22	44181335	44206622	PARVG|ENST00000475485.6	+	44181335,44181741,44183317,44185807,44186576,44189113,44190550,44192048,44196156,44196346,44198620,44205756,44206316	44181370,44181917,44183408,44185872,44187878,44189254,44190666,44192129,44196213,44196415,44198722,44205829,44206622	0.933333
spleen_female_adult_51_years	chr2	217903647	217903687	217903647	-	High_confidence	14	16	30	2.210692	3.922829	chr2	217903613	217903790	LINE|CR1|L3b	-	chr2	217859228	217903813	TNS1|ENST00000310858.10	-	217859228,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217903602	217859701,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217903813	0.900000
spleen_female_adult_51_years	chr17	16981390	16981394	16981393	-	High_confidence	7	7	12	0.884277	3.027169	chr17	16980989	16981426	LINE|L2|L2a	+	chr17	16980830	16981286	STRG.117426.1	-	16980830	16981286	0.500000
spleen_female_adult_51_years	chr3	129559620	129559621	129559620	-	High_confidence	6	6	8	0.589518	2.750000	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	1.000000
spleen_female_adult_51_years	chr5	34244753	34244781	34244753	-	High_confidence	8	9	30	2.210692	4.168326	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34173384	34244858	STRG.41865.4	-	34173384,34175821,34179012,34182679,34218294,34244615	34175537,34175957,34179097,34182867,34218450,34244858	0.600000
spleen_female_adult_51_years	chr3	134595263	134595264	134595263	+	RAMPAGE_only	13	13	13	0.957967	3.180833	chr3	134595069	134595442	LTR|ERVL-MaLR|THE1C	+	chr3	134597823	134628104	EPHB1|ENST00000472904.5	+	134597823,134615183,134627939	134597984,134615438,134628104	0.615385
spleen_female_adult_51_years	chr17	6940403	6940404	6940403	-	High_confidence	6	6	7	0.515828	2.584963	chr17	6940273	6940666	LTR|ERV1|MER51A	-	chr17	6939757	6940398	STRG.116624.1	-	6939757	6940398	0.714286
spleen_female_adult_51_years	chr6	142030417	142030446	142030417	-	High_confidence	4	4	15	1.105346	3.324863	chr6	142030076	142030610	LTR|ERVL|MLT2A2	-	chr6	142030192	142030429	STRG.56295.1	-	142030192	142030429	0.533333
spleen_female_adult_51_years	chr7	37690429	37690430	37690429	+	High_confidence	19	19	19	1.400105	3.536887	chr7	37690241	37690627	LTR|ERVL-MaLR|MSTB	+	chr7	37690127	37694108	STRG.60435.1	+	37690127	37694108	0.526316
spleen_female_adult_51_years	chr2	149006003	149006017	149006016	+	RAMPAGE_only	27	29	80	5.895180	5.427567	chr2	149005870	149006070	SINE|MIR|MIRc	-	chr2	148999934	149026759	KIF5C|ENST00000482151.1	+	148999934,149000721,149005392,149007962,149010134,149011569,149023077	149000524,149000782,149005464,149008067,149010351,149011683,149026759	0.562500
spleen_female_adult_51_years	chr14	106844863	106844885	106844864	+	High_confidence	3	5	14	1.031656	3.700440	chr14	106836775	106845293	LTR|ERV1|HERV3-int	-	chr14	106845165	106845523	STRG.108901.1	+	106845165	106845523	0.571429
spleen_female_adult_51_years	chr9	105500626	105500652	105500651	+	High_confidence	5	5	11	0.810587	2.646439	chr9	105500002	105500744	LINE|L1|L1MCa	-	chr9	105500658	105552433	FSD1L|ENST00000374707.1	+	105500658,105506398,105508616,105512806,105534492,105535066,105539262,105546357	105500763,105506608,105508715,105512936,105534593,105535318,105539351,105552433	0.909091
spleen_female_adult_51_years	chr3	187021850	187021852	187021851	+	High_confidence	69	120	151	11.127152	5.813991	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021854	187042839	ST6GAL1|ENST00000440338.5	+	187021854,187038391,187038741,187042653	187022004,187038491,187038873,187042839	0.635762
spleen_female_adult_51_years	chr2	64015513	64015528	64015513	-	RAMPAGE_only	2	2	12	0.884277	3.095795	chr2	64015505	64015679	DNA|hAT-Charlie|MER20	-	chr2	63892145	64019072	VPS54|ENST00000409558.8	-	63892145,63897495,63899473,63912344,63912539,63913222,63914181,63916899,63919882,63920445,63921205,63933672,63942464,63944599,63947382,63949036,63962057,63965834,63968956,63972165,63981645,63983863,64018937	63893535,63897590,63899581,63912425,63912661,63913310,63914287,63916963,63919995,63920627,63921335,63934013,63942561,63944655,63947490,63949163,63962443,63965966,63968991,63972244,63981851,63984019,64019072	0.833333
spleen_female_adult_51_years	chrX	48683361	48683363	48683362	+	High_confidence	105	210	210	15.474847	5.728365	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
spleen_female_adult_51_years	chr2	73640722	73640723	73640722	+	High_confidence	41	42	51	3.758177	5.028758	chr2	73640769	73640932	LTR|ERVL-MaLR|MLT1J2	+	chr2	73640629	73642175	STRG.16706.7	+	73640629	73642175	0.921569
spleen_female_adult_51_years	chr6	41732671	41732693	41732692	-	RAMPAGE_only	6	8	10	0.736897	2.721928	chr6	41732628	41732733	SINE|MIR|MIR	-	chr6	41686528	41733853	TFEB|ENST00000394283.5	-	41686528,41687752,41687907,41689730,41690662,41691000,41732648	41687169,41687809,41688028,41689811,41690917,41691235,41733853	0.800000
spleen_female_adult_51_years	chr1	111473767	111473779	111473767	+	High_confidence	5	5	10	0.736897	3.321928	chr1	111473535	111473833	SINE|Alu|AluYm1	+	chr1	111473791	111478512	C1orf162|ENST00000343534.9	+	111473791,111476017,111476797,111477333,111477650,111477982	111474030,111476065,111476867,111477428,111477775,111478512	0.800000
spleen_female_adult_51_years	chr11	73272240	73272261	73272240	+	High_confidence	13	13	25	1.842244	4.053509	chr11	73272218	73272327	SINE|MIR|MIRc	+	chr11	73272201	73298617	P2RY6|ENST00000393590.2	+	73272201,73296484	73272466,73298617	0.800000
spleen_female_adult_51_years	chr16	2669512	2669534	2669520	-	RAMPAGE_only	3	4	13	0.957967	3.251629	chr16	2668787	2669524	LTR|ERVK|HERVK13-int	-	chr16	2663081	2671461	ERVK13-1|ENST00000562807.5	-	2663081,2669410,2671344	2663407,2669561,2671461	0.769231
spleen_female_adult_51_years	chr11	17282802	17282822	17282821	+	RAMPAGE_only	3	3	8	0.589518	2.750000	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.625000
spleen_female_adult_51_years	chr20	51439341	51439342	51439341	-	RAMPAGE_only	8	8	10	0.736897	3.321928	chr20	51439212	51439456	SINE|MIR|MIR	-	chr20	51386956	51542719	NFATC2|NM_012340.4	-	51386956,51398642,51432066,51435187,51435705,51454547,51473979,51475457,51516783,51523080,51542369	51391451,51398730,51432756,51435314,51435761,51454688,51474152,51475660,51516955,51524110,51542719	0.500000
spleen_female_adult_51_years	chr7	158863396	158863401	158863400	+	RAMPAGE_only	4	7	9	0.663208	2.503258	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	1.000000
spleen_female_adult_51_years	chr16	2757780	2757814	2757813	+	High_confidence	6	7	26	1.915933	4.257756	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	1.000000
spleen_female_adult_51_years	chr5	173746148	173746220	173746148	-	High_confidence	52	53	228	16.801262	6.290117	chr5	173745880	173746596	LTR|ERV1|MER4A	+	chr5	173719245	173746211	LINC01484|ENST00000518902.1	-	173719245,173746019	173719543,173746211	0.662281
spleen_female_adult_51_years	chr5	151669678	151669691	151669678	-	RAMPAGE_only	7	7	13	0.957967	3.238901	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	1.000000
spleen_female_adult_51_years	chr17	36115943	36115978	36115943	+	High_confidence	8	8	20	1.473795	3.391893	chr17	36115864	36116246	LTR|ERVL|MLT2A1	+	chr17	36116176	36177507	AC243829.2|ENST00000617914.1	+	36116176,36147579,36177194	36116217,36147695,36177507	0.500000
spleen_female_adult_51_years	chr15	92914950	92914974	92914973	+	High_confidence	22	22	64	4.716144	5.552599	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.812500
spleen_female_adult_51_years	chr2	140785902	140785915	140785914	-	RAMPAGE_only	10	10	28	2.063313	3.508622	chr2	140785621	140786177	LINE|L2|L2c	+	chr2	140231422	142131701	LRP1B|ENST00000389484.7	-	140231422,140234785,140238151,140239441,140247085,140270241,140274423,140297807,140314934,140321962,140323892,140325761,140334452,140335614,140350796,140352952,140356341,140357978,140358820,140364660,140370709,140371178,140373007,140378179,140385892,140442503,140444329,140444562,140450567,140456454,140457462,140475137,140485342,140487616,140492607,140495564,140501686,140502962,140506795,140509927,140514652,140516888,140525843,140526236,140534020,140536580,140540972,140541778,140598630,140601449,140700249,140701720,140702140,140702426,140715972,140716681,140769212,140770880,140776097,140813656,140839990,140840917,140850101,140851651,140867589,140868098,140883816,140886137,140902919,140907876,140922964,140950234,140951859,140982159,140989531,140993994,141005334,141013555,141015695,141019921,141048985,141055115,141058882,141062050,141188420,141229182,141247225,141254521,141480395,141810278,142130647	140233326,140234884,140238296,140239532,140247162,140270346,140274598,140297969,140315099,140322088,140324066,140325878,140334559,140335838,140351038,140353072,140356476,140358116,140358946,140364783,140370842,140371285,140373137,140378286,140386009,140442623,140444449,140444679,140450661,140456603,140457651,140475337,140485524,140487739,140492693,140495748,140501874,140503103,140506918,140510056,140514772,140517011,140525993,140526350,140534140,140536709,140541098,140541971,140598835,140601639,140700621,140701845,140702292,140702553,140716102,140716816,140769344,140771006,140776238,140813806,140840085,140841092,140850329,140851783,140867834,140868263,140884021,140886335,140903165,140908077,140923147,140950402,140951940,140982276,140989657,140994135,141005457,141013745,141015915,141020102,141049222,141055259,141059054,141062273,141188583,141229440,141247354,141254641,141480533,141810401,142131701	1.000000
spleen_female_adult_51_years	chr16	67238065	67238066	67238065	-	RAMPAGE_only	4	4	7	0.515828	2.521641	chr16	67237920	67238026	SINE|MIR|MIR3	-	chr16	67229390	67247464	FHOD1|ENST00000567752.5	-	67229390,67229792,67230065,67230313,67230600,67231187,67231429,67231636,67232038,67233656,67234356,67236556,67236965,67237238,67237474,67237656,67238033,67238201,67239347,67247209	67229718,67229990,67230228,67230506,67230791,67231349,67231549,67231819,67232194,67234267,67234472,67236733,67237114,67237382,67237569,67237768,67238128,67238967,67239454,67247464	1.000000
spleen_female_adult_51_years	chr1	212794677	212794710	212794709	+	High_confidence	4	4	10	0.736897	2.641604	chr1	212794607	212794885	LINE|L2|L2c	-	chr1	212794682	212804651	TATDN3|ENST00000530399.2	+	212794682,212795094,212796516,212797111,212802700,212804319,212804595	212794808,212795127,212796590,212797196,212802763,212804429,212804651	0.500000
spleen_female_adult_51_years	chr16	70590319	70590335	70590328	+	RAMPAGE_only	31	31	98	7.221595	5.217834	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.867347
spleen_female_adult_51_years	chr4	38078765	38078788	38078787	+	RAMPAGE_only	16	16	37	2.726521	4.777021	chr4	38078433	38078801	LTR|ERVL-MaLR|MLT1A	+	chr4	38020676	38137743	TBC1D1|ENST00000510573.6	+	38020676,38021585,38027787,38035587,38044361,38045816,38049617,38053105,38054198,38089931,38095928,38102998,38115709,38118032,38124961,38133083,38137134	38020695,38021718,38027879,38035698,38044490,38045903,38049898,38053225,38054338,38090117,38096090,38103157,38115954,38118192,38125131,38133257,38137743	0.972973
spleen_female_adult_51_years	chr4	41048757	41048797	41048789	+	High_confidence	17	17	71	5.231972	5.266933	chr4	41048638	41050114	Retroposon|SVA|SVA_C	+	chr4	41048748	41050102	STRG.36418.1	+	41048748	41050102	0.971831
spleen_female_adult_51_years	chr4	184265767	184265784	184265767	-	High_confidence	10	11	18	1.326415	3.057476	chr4	184265538	184266558	LINE|L1|L1M6	+	chr4	184265288	184266263	STRG.41065.1	-	184265288	184266263	0.777778
spleen_female_adult_51_years	chr10	17816381	17816409	17816408	+	RAMPAGE_only	3	3	11	0.810587	2.913977	chr10	17816252	17816714	LTR|ERVL|LTR16C	-	chr10	17809343	17911170	MRC1|ENST00000569591.2	+	17809343,17823073,17827541,17833674,17840692,17845288,17849578,17852966,17856241,17861386,17863533,17866561,17870245,17870847,17871981,17873783,17875089,17877899,17879720,17880524,17881066,17885268,17894209,17898033,17900787,17901972,17906885,17907533,17909305,17910214	17809526,17823475,17827715,17833839,17840806,17845435,17849764,17853124,17856352,17861502,17863682,17866761,17870373,17870935,17872126,17873825,17875253,17877967,17879821,17880670,17881181,17885435,17894312,17898266,17900953,17902122,17906999,17907698,17909347,17911170	1.000000
spleen_female_adult_51_years	chr14	38881001	38881017	38881001	-	RAMPAGE_only	11	11	22	1.621174	3.880180	chr14	38880649	38881113	LTR|ERVL-MaLR|MLT1F2	-	chr14	38749338	38916882	LINC00639|NR_039982.1	-	38749338,38835230,38835541,38890740,38916781	38749654,38835398,38839204,38890798,38916882	0.772727
spleen_female_adult_51_years	chr22	44187329	44187351	44187347	+	RAMPAGE_only	2	2	8	0.589518	2.521641	chr22	44187327	44187526	LTR|ERVL-MaLR|MLT1C-int	-	chr22	44185525	44207155	PARVG|ENST00000468564.6	+	44185525,44190550,44192048,44196156,44196346,44198620,44205756,44206316	44189254,44190666,44192129,44196213,44196415,44198722,44205829,44207155	0.875000
spleen_female_adult_51_years	chr21	29121989	29121993	29121989	+	High_confidence	12	12	25	1.842244	3.969002	chr21	29121887	29122110	DNA|hAT-Charlie|Charlie29a	+	chr21	29122054	29175029	MAP3K7CL|ENST00000460883.5	+	29122054,29149188,29159940,29174711	29122213,29149250,29160056,29175029	0.680000
spleen_female_adult_51_years	chr3	37058886	37058899	37058886	-	RAMPAGE_only	2	2	7	0.515828	2.584963	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.857143
spleen_female_adult_51_years	chr12	998265	998267	998265	+	RAMPAGE_only	2	4	7	0.515828	2.584963	chr12	998256	998737	LTR|ERVL-MaLR|MLT1F2	-	chr12	991621	1028339	ERC1|ENST00000589132.1	+	991621,1020674,1027747	991795,1020776,1028339	0.857143
spleen_female_adult_51_years	chr6	30830597	30830641	30830597	-	High_confidence	4	4	33	2.431762	4.687500	chr6	30830591	30830730	LTR|Gypsy|MamGypLTR1b	-	chr6	30812865	30830659	LINC00243|NR_130726.1	-	30812865,30830514	30814772,30830659	0.727273
spleen_female_adult_51_years	chr1	155679929	155679930	155679929	-	High_confidence	13	13	13	0.957967	2.777363	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	0.923077
spleen_female_adult_51_years	chr3	135516281	135516307	135516281	-	High_confidence	3	3	11	0.810587	2.921928	chr3	135516138	135516365	LINE|CR1|X7C_LINE	+	chr3	135456414	135516394	STRG.32034.1	-	135456414,135491562,135493257,135496268,135516149	135458718,135491803,135493295,135496495,135516394	0.727273
spleen_female_adult_51_years	chr3	44439852	44439896	44439874	-	RAMPAGE_only	5	5	38	2.800210	4.614859	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431719	44477670	ZNF445|ENST00000396077.7	-	44431719,44449512,44450446,44450867,44451313,44455120,44458243,44477590	44448739,44449623,44450573,44450962,44451482,44455696,44458364,44477670	0.736842
spleen_female_adult_51_years	chr17	68413718	68413753	68413739	+	High_confidence	2	2	10	0.736897	3.169925	chr17	68408123	68414142	LINE|L1|L1PA3	-	chr17	68413739	68428763	AC007780.1|ENST00000592030.1	+	68413739,68413910,68420188,68428636	68413795,68414182,68420506,68428763	0.800000
spleen_female_adult_51_years	chr17	59619894	59619929	59619894	+	High_confidence	390	441	1470	108.323927	6.210341	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.964626
spleen_female_adult_51_years	chr2	201122589	201122621	201122589	+	High_confidence	4	5	10	0.736897	2.646439	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201122476	201130053	CFLAR|ENST00000425030.1	+	201122476,201129728	201122747,201130053	0.600000
spleen_female_adult_51_years	chr5	39134998	39135002	39134998	-	RAMPAGE_only	7	7	12	0.884277	2.732159	chr5	39134954	39135006	SINE|tRNA-RTE|MamSINE1	-	chr5	39107307	39127807	FYB1|ENST00000646444.1	-	39107307,39108230,39110355,39118873,39119534,39122335,39124252,39125971,39127740	39107465,39108262,39110389,39119036,39119634,39122402,39124278,39126135,39127807	0.666667
spleen_female_adult_51_years	chr9	124804318	124804342	124804318	+	RAMPAGE_only	3	3	8	0.589518	3.000000	chr9	124804356	124804442	DNA|hAT-Charlie|MER58B	+	chr9	124800873	124814891	OLFML2A|NM_001282715.1	+	124800873,124801413,124804093,124807780,124809807	124801074,124801663,124804342,124807966,124814891	1.000000
spleen_female_adult_51_years	chr7	107580245	107580267	107580264	+	High_confidence	273	276	1335	98.375812	6.565251	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.957303
spleen_female_adult_51_years	chr10	65570629	65570651	65570650	+	High_confidence	21	21	32	2.358072	4.304229	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570874	65615757	LINC01515|ENST00000593568.1	+	65570874,65572934,65585484,65615635	65571579,65573056,65585567,65615757	0.812500
spleen_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	60	61	61	4.495075	4.829040	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.852459
spleen_female_adult_51_years	chr12	53464784	53464816	53464815	+	RAMPAGE_only	4	4	11	0.810587	3.121928	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.636364
spleen_female_adult_51_years	chrX	155612322	155612404	155612335	+	High_confidence	6	6	18	1.326415	3.794653	chrX	155612307	155612443	SINE|MIR|MIR3	-	chrX	155612564	155782459	SPRY3|NM_001304990.1	+	155612564,155767961,155773765	155612647,155768136,155782459	0.500000
spleen_female_adult_51_years	chrX	152755137	152755153	152755152	+	RAMPAGE_only	8	10	14	1.031656	2.873141	chrX	152755031	152755185	LINE|L1|L1MEh	-	chrX	152753920	152760222	CSAG3|ENST00000617158.4	+	152753920,152755154,152758906,152759475,152759842	152753981,152755214,152759021,152759648,152760222	0.714286
spleen_female_adult_51_years	chr22	32580225	32580247	32580225	+	RAMPAGE_only	2	2	9	0.663208	2.725481	chr22	32580186	32580275	DNA|hAT-Charlie|MER58B	+	chr22	32583299	32584204	Z82246.1|ENST00000428201.1	+	32583299,32583876	32583428,32584204	0.888889
spleen_female_adult_51_years	chr1	147173225	147173264	147173225	+	High_confidence	5	5	17	1.252726	3.616875	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.941176
spleen_female_adult_51_years	chr10	68911161	68911171	68911161	+	RAMPAGE_only	2	3	7	0.515828	2.521641	chr10	68911147	68911199	LINE|CR1|X6B_LINE	+	chr10	68913426	68934883	DDX50|ENST00000460470.1	+	68913426,68914058,68919831,68934798	68913576,68914204,68919981,68934883	0.857143
spleen_female_adult_51_years	chr22	44180908	44180951	44180950	+	High_confidence	7	7	45	3.316039	4.433635	chr22	44180997	44181117	LINE|L2|L2c	+	chr22	44180889	44208469	PARVG|NM_022141.6	+	44180889,44181741,44183317,44185807,44187775,44189113,44190550,44192048,44193800,44196154,44196346,44198620,44205756,44206316	44181185,44181917,44183408,44185872,44187878,44189254,44190666,44192104,44193823,44196213,44196415,44198722,44205829,44208469	0.822222
spleen_female_adult_51_years	chr12	9645304	9645305	9645304	+	RAMPAGE_only	8	8	12	0.884277	3.251629	chr12	9645124	9645474	LTR|ERVL-MaLR|THE1B	+	chr12	9642867	9658415	LOC374443|NR_046449.2	+	9642867,9653682,9655872,9656920	9643103,9653808,9655979,9658415	0.750000
spleen_female_adult_51_years	chrX	53546444	53546454	53546453	-	RAMPAGE_only	5	5	10	0.736897	2.921928	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.800000
spleen_female_adult_51_years	chr19	49448213	49448223	49448222	-	High_confidence	9	9	18	1.326415	3.503258	chr19	49448212	49448629	LINE|L2|L2b	+	chr19	49446298	49448062	PIH1D1|ENST00000594845.5	-	49446298,49446550,49447023,49447826,49448000	49446423,49446694,49447099,49447908,49448062	0.611111
spleen_female_adult_51_years	chr12	109053947	109053957	109053956	-	High_confidence	35	42	106	7.811113	5.362233	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.707547
spleen_female_adult_51_years	chr6	89638823	89638837	89638823	+	High_confidence	3	4	11	0.810587	2.721928	chr6	89638870	89638965	SINE|MIR|MIRb	+	chr6	89638731	89639505	STRG.53551.1	+	89638731	89639505	0.727273
spleen_female_adult_51_years	chr17	59729704	59729739	59729704	+	High_confidence	5	9	35	2.579141	4.786426	chr17	59729673	59729983	SINE|Alu|AluSq2	-	chr17	59729714	59737517	VMP1|ENST00000587259.5	+	59729714,59731420,59735337,59737452	59730017,59731522,59735473,59737517	0.742857
spleen_female_adult_51_years	chr15	77285063	77285081	77285063	-	RAMPAGE_only	2	2	6	0.442138	2.584963	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.666667
spleen_female_adult_51_years	chr5	77088055	77088109	77088108	+	High_confidence	5	8	23	1.694864	4.095795	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.608696
spleen_female_adult_51_years	chr14	95725403	95725422	95725403	+	RAMPAGE_only	2	2	7	0.515828	2.584963	chr14	95725236	95725714	LINE|L1|L1M1	-	chr14	95715479	95757656	AL139020.1|ENST00000556386.1	+	95715479,95717470,95755244	95715707,95717568,95757656	0.571429
spleen_female_adult_51_years	chr4	78600124	78600130	78600129	+	RAMPAGE_only	4	6	11	0.810587	3.095795	chr4	78599930	78600224	LTR|ERV1|MER92A	-	chr4	78597072	78610363	ANXA3|ENST00000505805.1	+	78597072,78601509,78604276,78610055	78597414,78601568,78604399,78610363	1.000000
spleen_female_adult_51_years	chr20	18794077	18794086	18794077	+	High_confidence	31	31	74	5.453041	4.252955	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.972973
spleen_female_adult_51_years	chr19	11321325	11321326	11321325	-	High_confidence	14	16	18	1.326415	3.836592	chr19	11321200	11321519	LTR|ERVL-MaLR|THE1D	-	chr19	11300866	11321323	AC011472.2|ENST00000585801.1	-	11300866,11306678,11321293	11301236,11306824,11321323	0.555556
spleen_female_adult_51_years	chr6	31400605	31400631	31400605	-	High_confidence	6	6	22	1.621174	3.541446	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31394288	31400627	STRG.50589.1	-	31394288,31398058	31395217,31400627	0.909091
spleen_female_adult_51_years	chr21	44485430	44485463	44485462	+	High_confidence	7	8	18	1.326415	3.836592	chr21	44485339	44486157	LTR|ERV1|LTR1A2	+	chr21	44485576	44490288	LINC02575|ENST00000449713.1	+	44485576,44490030	44486230,44490288	0.888889
spleen_female_adult_51_years	chr13	74231426	74231485	74231484	+	High_confidence	11	11	68	5.010903	5.495335	chr13	74231443	74231557	SINE|MIR|MIRc	-	chr13	74231456	74259976	LINC00402|ENST00000419499.1	+	74231456,74256932	74231752,74259976	0.500000
spleen_female_adult_51_years	chr8	24387619	24387624	24387619	-	High_confidence	44	45	66	4.863523	4.935765	chr8	24386908	24387825	LTR|ERVK|HERVK22-int	-	chr8	24295813	24387515	AC120193.1|ENST00000518988.5	-	24295813,24296153,24300884,24387160	24296057,24296250,24300929,24387515	0.893939
spleen_female_adult_51_years	chr22	37232792	37232811	37232810	-	RAMPAGE_only	6	7	11	0.810587	3.121928	chr22	37232591	37232793	LINE|L2|L2c	-	chr22	37225965	37231503	RAC2|ENST00000481215.1	-	37225965,37226670,37231230	37226039,37226803,37231503	0.727273
spleen_female_adult_51_years	chr3	151539216	151539278	151539277	-	RAMPAGE_only	5	5	30	2.210692	4.164735	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.500000
spleen_female_adult_51_years	chr19	48727420	48727421	48727420	-	RAMPAGE_only	6	6	8	0.589518	2.807355	chr19	48727220	48727380	SINE|MIR|MIR3	-	chr19	48720586	48725581	RASIP1|ENST00000601530.1	-	48720586,48721853,48724336,48724716	48720997,48722001,48724509,48725581	0.500000
spleen_female_adult_51_years	chr1	192106266	192106309	192106266	+	High_confidence	8	8	62	4.568764	3.635297	chr1	192106126	192106503	LTR|ERVL-MaLR|THE1C	+	chr1	192106201	192123270	STRG.9615.1	+	192106201,192122518,192123178	192106418,192122589,192123270	0.951613
spleen_female_adult_51_years	chr4	4269605	4269614	4269609	-	High_confidence	111	123	384	28.296863	4.102524	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4269655	STRG.34816.2	-	4267700,4268529,4269428	4268023,4268615,4269655	0.976562
spleen_female_adult_51_years	chr16	11670645	11670646	11670645	+	RAMPAGE_only	6	7	8	0.589518	2.521641	chr16	11670570	11670680	SINE|MIR|MIRc	-	chr16	11668432	11679159	SNN|NM_003498.5	+	11668432,11675974	11668540,11679159	0.875000
spleen_female_adult_51_years	chr11	65428232	65428513	65428512	+	RAMPAGE_only	23	25	246	18.127678	5.508120	chr11	65428531	65428593	DNA|hAT-Tip100|MamRep4096	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
spleen_female_adult_51_years	chr11	78532947	78532951	78532950	+	High_confidence	4	5	9	0.663208	2.947703	chr11	78532498	78533068	LTR|ERV1|LTR24C	+	chr11	78533175	78558565	AP003110.1|ENST00000526976.1	+	78533175,78546508,78555214,78558263	78533303,78546640,78555369,78558565	0.666667
spleen_female_adult_51_years	chr21	34512192	34512233	34512218	-	High_confidence	7	10	42	3.094969	4.993392	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.666667
spleen_female_adult_51_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	21	21	21	1.547485	3.820889	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
spleen_female_adult_51_years	chr3	36925060	36925068	36925067	-	RAMPAGE_only	3	4	9	0.663208	3.169925	chr3	36923610	36925588	LTR|ERV1|MER83A-int	+	chr3	36899106	36908518	TRANK1|ENST00000463764.2	-	36899106,36903148,36908322	36899259,36903275,36908518	0.555556
spleen_female_adult_51_years	chr4	2867814	2867858	2867835	+	High_confidence	9	9	50	3.684487	4.837581	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.960000
spleen_female_adult_51_years	chr18	28159267	28159297	28159296	-	High_confidence	9	9	20	1.473795	3.684184	chr18	28159142	28159517	LTR|ERVL|LTR79	+	chr18	28011917	28159297	CDH2|ENST00000413878.1	-	28011917,28013682,28147672,28159148	28011992,28013909,28147784,28159297	0.650000
spleen_female_adult_51_years	chr10	96737542	96737545	96737542	+	RAMPAGE_only	5	7	14	1.031656	3.392747	chr10	96737353	96737687	LTR|ERVL-MaLR|THE1D	+	chr10	96750265	96750923	RPL13AP5|NR_026712.1	+	96750265	96750923	0.785714
spleen_female_adult_51_years	chr8	125942481	125942482	125942481	+	High_confidence	15	15	18	1.326415	3.683542	chr8	125942190	125942570	LTR|ERV1|MER92C	+	chr8	125942498	125943050	STRG.71749.1	+	125942498	125943050	0.888889
spleen_female_adult_51_years	chr6	169654674	169654702	169654701	-	RAMPAGE_only	3	4	11	0.810587	3.121928	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169652839	169656363	STRG.58415.1	-	169652839	169656363	0.636364
spleen_female_adult_51_years	chr2	11345436	11345456	11345455	-	High_confidence	6	6	10	0.736897	2.646439	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11179758	11345407	ROCK2|NM_001321643.1	-	11179758,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345407	0.900000
spleen_female_adult_51_years	chr3	48479436	48479459	48479458	-	High_confidence	3	3	8	0.589518	2.750000	chr3	48479425	48479570	LINE|L1|L1M4	+	chr3	48469359	48479559	SHISA5|ENST00000486344.5	-	48469359,48469727,48479176	48469573,48469843,48479559	1.000000
spleen_female_adult_51_years	chr9	98087149	98087153	98087149	-	RAMPAGE_only	5	5	10	0.736897	2.725481	chr9	98087066	98087131	LINE|L2|L2b	-	chr9	98084354	98119198	TRIM14|ENST00000341469.6	-	98084354,98091908,98094866,98099930,98109888,98118981	98088005,98092001,98095029,98100164,98109984,98119198	0.800000
spleen_female_adult_51_years	chr5	97355985	97356007	97356006	+	High_confidence	4	4	9	0.663208	2.750000	chr5	97350352	97356372	LINE|L1|L1PA13	-	chr5	97355988	97668610	STRG.45171.2	+	97355988,97431743,97668550	97356162,97431900,97668610	0.777778
spleen_female_adult_51_years	chr12	103707982	103708009	103707982	+	RAMPAGE_only	4	5	12	0.884277	2.663533	chr12	103707956	103708004	DNA|hAT-Charlie|Charlie4z	+	chr12	103587272	103761354	STRG.98363.5	+	103587272,103590896,103594394,103620467,103622041,103631597,103637110,103638015,103640122,103648689,103650495,103652555,103654554,103655250,103655455,103660330,103660682,103662845,103666290,103668642,103669540,103670695,103673906,103675927,103677452,103683204,103684988,103688167,103689845,103690423,103692811,103695549,103699095,103703147,103704557,103705631,103711470,103712366,103713642,103715814,103717769,103724974,103726115,103727266,103728848,103730115,103731575,103733005,103735490,103737633,103740629,103742404,103745172,103746596,103748962,103750578,103753219,103755301,103755611,103758169,103759132,103761299	103587557,103591030,103594510,103620553,103622111,103631693,103637236,103638212,103640256,103648823,103650578,103652705,103654698,103655307,103655581,103660384,103660763,103662998,103666353,103668729,103669627,103670807,103674087,103676021,103677611,103683300,103685084,103688215,103689982,103690538,103692889,103695844,103699227,103703276,103704614,103708536,103711516,103712443,103713768,103715888,103717841,103725094,103726163,103727350,103728995,103730256,103731635,103733182,103735580,103739468,103740756,103742554,103745277,103746704,103749156,103750720,103753353,103755467,103755718,103758289,103759273,103761354	0.916667
spleen_female_adult_51_years	chr19	39335707	39335718	39335717	-	High_confidence	3	4	7	0.515828	2.584963	chr19	39335628	39335746	DNA|hAT-Tip100|MER91A	-	chr19	39328358	39335531	GMFG|ENST00000596583.5	-	39328358,39328999,39329547,39333076,39335434	39328548,39329073,39329626,39333126,39335531	0.714286
spleen_female_adult_51_years	chr6	166957430	166957439	166957430	-	High_confidence	4	5	10	0.736897	2.725481	chr6	166957416	166957859	LINE|L2|L2a	+	chr6	166929539	166957184	RNASET2|ENST00000476238.6	-	166929539,166931043,166934090,166938894,166943018,166946681,166948569,166952487,166956096,166957125	166929791,166931118,166934136,166939008,166943089,166946739,166948625,166952548,166956191,166957184	0.800000
spleen_female_adult_51_years	chr11	121448852	121448867	121448852	+	RAMPAGE_only	4	4	10	0.736897	2.721928	chr11	121448674	121449006	LINE|L2|L2b	-	chr11	121452202	121633762	SORL1|NM_003105.5	+	121452202,121470006,121478117,121488031,121490042,121496868,121513002,121514151,121520656,121522585,121522915,121532463,121543547,121545242,121549959,121550584,121553936,121555186,121557313,121558590,121559518,121566939,121570156,121574240,121577280,121583457,121586221,121588019,121589258,121590039,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121452616,121470123,121478243,121488193,121490110,121497049,121513104,121514321,121520849,121522703,121522989,121532552,121543726,121545429,121550088,121550670,121554109,121555318,121557405,121558837,121559657,121567113,121570270,121574363,121577400,121583583,121586329,121588151,121589390,121590174,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121633762	0.600000
spleen_female_adult_51_years	chr7	85051418	85051419	85051418	-	RAMPAGE_only	38	38	40	2.947590	4.754378	chr7	85051293	85051729	LINE|L2|L2b	+	chr7	84999396	85041939	SEMA3D|ENST00000484038.1	-	84999396,85006801,85012781,85015058,85018251,85020232,85022390,85036888,85040672,85041837	84999865,85006941,85012846,85015216,85018293,85020321,85022613,85037033,85040742,85041939	0.850000
spleen_female_adult_51_years	chr10	65570512	65570563	65570521	+	High_confidence	33	39	97	7.147905	5.440031	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570874	65615757	LINC01515|ENST00000593568.1	+	65570874,65572934,65585484,65615635	65571579,65573056,65585567,65615757	0.711340
spleen_female_adult_51_years	chr1	202471468	202471496	202471468	+	RAMPAGE_only	22	27	62	4.568764	5.000815	chr1	202470938	202471780	LINE|L1|L1ME3Cz	-	chr1	202462742	202581152	PPP1R12B|ENST00000491336.5	+	202462742,202488532,202493113,202495292,202495569,202496780,202558876,202562777,202564442,202567777,202569146,202580473	202463097,202488623,202493317,202495482,202495682,202496822,202558893,202562922,202564547,202567831,202569197,202581152	0.951613
spleen_female_adult_51_years	chr3	108125047	108125048	108125047	+	High_confidence	19	23	27	1.989623	4.293661	chr3	108124858	108125222	LTR|ERVL-MaLR|THE1C	+	chr3	108125820	108138610	LINC01215|NR_110028.1	+	108125820,108135143,108136313	108125908,108135350,108138610	0.592593
spleen_female_adult_51_years	chr19	571754	571774	571754	-	High_confidence	6	6	18	1.326415	3.013071	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.888889
spleen_female_adult_51_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	28	28	28	2.063313	4.378783	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.535714
spleen_female_adult_51_years	chr12	31804982	31804983	31804982	-	High_confidence	155	156	158	11.642980	5.519807	chr12	31804677	31806355	LTR|ERV1|LTR12C	-	chr12	31801995	31805701	STRG.93876.1	-	31801995,31804674	31802163,31805701	0.772152
spleen_female_adult_51_years	chr15	100596932	100596939	100596938	-	High_confidence	6	6	12	0.884277	2.913977	chr15	100596785	100597218	LTR|ERV1|LTR43B	+	chr15	100580319	100596936	LINS1|ENST00000560934.1	-	100580319,100580443,100596909	100580352,100580945,100596936	0.916667
spleen_female_adult_51_years	chr7	90463200	90463212	90463200	+	RAMPAGE_only	2	3	7	0.515828	2.807355	chr7	90463115	90463485	LTR|ERVL-MaLR|THE1C	+	chr7	90466423	90790628	CDK14|ENST00000449528.5	+	90466423,90479227,90494366,90563734,90604217,90726566,90747680,90790572	90466513,90479274,90494430,90563863,90604249,90726812,90747775,90790628	0.714286
spleen_female_adult_51_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	12	12	12	0.884277	3.251629	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
spleen_female_adult_51_years	chr5	176216322	176216358	176216322	-	RAMPAGE_only	2	3	10	0.736897	2.947703	chr5	176216196	176218144	LTR|ERV1|MER83A-int	+	chr5	176204558	176204933	STRG.48532.1	-	176204558	176204933	0.800000
spleen_female_adult_51_years	chr11	73272149	73272154	73272153	+	High_confidence	5	5	9	0.663208	2.750000	chr11	73272030	73272210	SINE|MIR|MIRb	-	chr11	73272141	73298625	P2RY6|NM_001277204.1	+	73272141,73295729,73296484	73272466,73295815,73298625	0.888889
spleen_female_adult_51_years	chr21	36005313	36005320	36005319	+	High_confidence	35	35	68	5.010903	4.883346	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.955882
spleen_female_adult_51_years	chr12	29209023	29209024	29209023	+	RAMPAGE_only	19	19	27	1.989623	3.224881	chr12	29208990	29209077	LINE|L2|L2	-	chr12	29223622	29335616	FAR2|NM_018099.4	+	29223622,29270411,29293299,29297020,29307657,29309185,29311027,29311882,29316840,29321794,29332599,29333631	29223894,29270638,29293475,29297200,29307835,29309230,29311146,29311950,29317012,29321924,29332727,29335616	0.962963
spleen_female_adult_51_years	chr14	24308771	24308816	24308792	-	RAMPAGE_only	4	4	20	1.473795	3.576618	chr14	24308792	24309154	LTR|ERVL|LTR42	+	chr14	24305186	24311370	CIDEB|NM_014430.2	-	24305186,24305946,24306373,24307370,24307817,24308478,24310648	24305765,24306137,24306523,24307515,24307920,24308830,24311370	0.850000
spleen_female_adult_51_years	chr13	55410848	55410859	55410848	+	High_confidence	9	10	21	1.547485	3.880180	chr13	55408945	55411215	LINE|L1|L1PBa	-	chr13	55410870	55412546	STRG.101519.1	+	55410870	55412546	0.571429
spleen_female_adult_51_years	chr16	5058773	5058789	5058788	-	High_confidence	6	9	19	1.400105	3.530493	chr16	5058754	5058790	DNA|hAT|MER53	-	chr16	5047877	5058620	C16orf89|ENST00000592343.1	-	5047877,5055245,5056052,5058492	5047964,5055350,5056188,5058620	0.736842
spleen_female_adult_51_years	chr14	102235458	102235481	102235480	-	High_confidence	7	7	14	1.031656	2.842371	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.857143
spleen_female_adult_51_years	chr4	152666345	152666346	152666345	+	High_confidence	8	8	8	0.589518	2.750000	chr4	152666206	152666370	DNA|hAT-Charlie|MER5B	+	chr4	152666367	152670107	AC106882.1|ENST00000515789.1	+	152666367,152668397	152667028,152670107	1.000000
spleen_female_adult_51_years	chr19	17556545	17556557	17556555	+	High_confidence	7	12	23	1.694864	3.641250	chr19	17556574	17556631	SINE|MIR|MIR	+	chr19	17556560	17568577	COLGALT1|ENST00000600474.1	+	17556560,17559310,17560347,17567405,17568508	17556679,17559421,17560465,17567540,17568577	0.869565
spleen_female_adult_51_years	chr21	41395725	41395736	41395725	+	RAMPAGE_only	3	3	7	0.515828	2.521641	chr21	41395654	41395771	LINE|RTE-BovB|MamRTE1	+	chr21	41397630	41399766	MX2|ENST00000493753.1	+	41397630,41398896,41399195	41397691,41399019,41399766	0.714286
spleen_female_adult_51_years	chr12	79873262	79873267	79873266	-	High_confidence	14	14	23	1.694864	3.499228	chr12	79873243	79873519	DNA|hAT-Charlie|Charlie1a	+	chr12	79828370	79872872	PPP1R12A|ENST00000548318.1	-	79828370,79832331,79845301,79848787,79872807	79828464,79832491,79845420,79848931,79872872	0.913043
spleen_female_adult_51_years	chr10	91796833	91796846	91796845	-	RAMPAGE_only	3	4	10	0.736897	3.321928	chr10	91796573	91797282	DNA|TcMar-Tigger|Tigger1	-	chr10	91782838	91798196	TNKS2-AS1|NR_108070.1	-	91782838,91797812	91783160,91798196	0.600000
spleen_female_adult_51_years	chr1	26306932	26306933	26306932	-	High_confidence	7	7	11	0.810587	3.321928	chr1	26306920	26307081	SINE|MIR|MIRb	+	chr1	26294191	26306989	UBXN11|ENST00000450041.5	-	26294191,26296918,26297426,26297961,26301693,26306591,26306855	26294331,26296995,26297481,26298062,26301722,26306704,26306989	0.636364
spleen_female_adult_51_years	chr15	80059918	80059933	80059918	+	High_confidence	55	57	143	10.537634	4.550531	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.951049
spleen_female_adult_51_years	chr14	53217609	53217615	53217614	+	High_confidence	4	4	11	0.810587	2.921928	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217711	53687258	AL365295.1|ENST00000456100.5	+	53217711,53318030,53369451,53687198	53218055,53318138,53369501,53687258	0.636364
spleen_female_adult_51_years	chr6	2881630	2881636	2881635	-	High_confidence	14	14	23	1.694864	4.095795	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.956522
spleen_female_adult_51_years	chr11	119046588	119046605	119046588	-	RAMPAGE_only	5	5	17	1.252726	2.952820	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119044231	119048825	STRG.90773.6	-	119044231,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713	119045654,119045834,119046467,119046802,119047818,119048080,119048370,119048563,119048825	0.941176
spleen_female_adult_51_years	chr12	119184104	119184128	119184126	-	High_confidence	9	16	25	1.842244	3.621654	chr12	119183922	119184154	SINE|MIR|MIRc	-	chr12	119182047	119183259	AC084880.3|ENST00000535921.1	-	119182047,119182873	119182202,119183259	0.880000
spleen_female_adult_51_years	chr1	20683068	20683092	20683068	-	RAMPAGE_only	3	4	9	0.663208	2.750000	chr1	20682984	20683054	SINE|MIR|MIR3	-	chr1	20664013	20685187	KIF17|ENST00000477167.5	-	20664013,20666213,20670420,20671937,20682652,20684808	20664762,20666331,20670488,20672196,20682884,20685187	0.888889
spleen_female_adult_51_years	chr8	65979196	65979197	65979196	+	RAMPAGE_only	22	22	25	1.842244	3.970176	chr8	65979005	65979377	LTR|ERVL-MaLR|THE1B	+	chr8	66021555	66100520	DNAJC5B|NM_033105.4	+	66021555,66043487,66051530,66076659,66080376,66099936	66021705,66043611,66051666,66076873,66080548,66100520	0.800000
spleen_female_adult_51_years	chr2	96303160	96303182	96303177	-	RAMPAGE_only	5	6	22	1.621174	3.499228	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.954545
spleen_female_adult_51_years	chr13	29647525	29647572	29647530	+	High_confidence	6	6	31	2.284382	4.284684	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647382	29655626	STRG.100119.1	+	29647382,29655072	29647724,29655626	0.741935
spleen_female_adult_51_years	chr2	159428326	159428357	159428356	-	RAMPAGE_only	10	10	20	1.473795	3.892407	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.650000
spleen_female_adult_51_years	chr11	1870255	1870314	1870255	+	High_confidence	6	6	31	2.284382	4.825164	chr11	1870205	1870284	SINE|MIR|MIRb	-	chr11	1870251	1892263	LSP1|NM_001289005.1	+	1870251,1880086,1881431,1883418,1883931,1884279,1884499,1886731,1887236,1887473,1891772	1870661,1880224,1881596,1883560,1884024,1884323,1884581,1886866,1887314,1887576,1892263	0.741935
spleen_female_adult_51_years	chr1	14946100	14946140	14946139	+	High_confidence	8	8	16	1.179036	2.727217	chr1	14945935	14946157	SINE|MIR|MIR	-	chr1	14945918	15068155	KAZN|NM_001017999.2	+	14945918,14960683,15034748,15043988,15056090,15060171,15063571,15065629	14946173,14960875,15034885,15044159,15056280,15060302,15063622,15068155	1.000000
spleen_female_adult_51_years	chr1	174874418	174874439	174874418	+	High_confidence	49	50	179	13.190465	6.280050	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.597765
spleen_female_adult_51_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	13	13	13	0.957967	3.700440	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.923077
spleen_female_adult_51_years	chr1	116390234	116390240	116390234	+	RAMPAGE_only	3	3	11	0.810587	2.594907	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
spleen_female_adult_51_years	chr19	20423696	20423704	20423703	-	RAMPAGE_only	10	11	23	1.694864	3.784942	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.565217
spleen_female_adult_51_years	chr7	55538661	55538664	55538661	-	High_confidence	4	4	10	0.736897	2.725481	chr7	55538614	55538881	LINE|L1|L1ME4b	+	chr7	55471967	55538660	VOPP1|ENST00000625836.2	-	55471967,55492281,55497612,55521071,55538612	55473045,55492418,55497690,55521130,55538660	0.800000
spleen_female_adult_51_years	chr2	203533429	203533449	203533448	-	High_confidence	10	10	37	2.726521	4.707715	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.837838
spleen_female_adult_51_years	chr1	207331274	207331286	207331285	+	RAMPAGE_only	3	3	8	0.589518	2.500000	chr1	207331329	207331468	DNA|hAT-Charlie|Charlie4z	+	chr1	207326831	207373252	CD55|ENST00000635614.2	+	207326831,207331107,207336692,207337328,207339396,207367369,207370708,207372768	207326837,207331296,207336818,207337409,207339417,207367487,207370834,207373252	0.625000
spleen_female_adult_51_years	chr5	89350976	89350977	89350976	+	RAMPAGE_only	5	7	7	0.515828	2.521641	chr5	89350977	89351163	SINE|MIR|MIR	+	chr5	89418806	89466398	MEF2C-AS1|ENST00000508742.1	+	89418806,89465665,89465915	89418892,89465775,89466398	0.571429
spleen_female_adult_51_years	chr7	30568912	30568913	30568912	-	RAMPAGE_only	7	7	10	0.736897	2.921928	chr7	30568321	30569340	LTR|ERV1|MER4-int	+	chr7	30558095	30573088	GARS-DT|ENST00000584621.5	-	30558095,30561465,30563730,30568832,30572999	30559355,30562128,30563998,30568989,30573088	0.800000
spleen_female_adult_51_years	chr3	180870518	180870522	180870518	-	High_confidence	30	33	58	4.274005	5.095314	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180747109	180870508	STRG.33888.1	-	180747109,180748245,180751347,180781983,180847506,180870046	180748043,180748319,180751410,180782124,180847624,180870508	0.896552
spleen_female_adult_51_years	chr5	74103127	74103128	74103127	-	High_confidence	13	13	15	1.105346	3.773557	chr5	74103070	74103603	LTR|ERV1|MER51A	+	chr5	74102587	74103108	STRG.43662.1	-	74102587	74103108	0.800000
spleen_female_adult_51_years	chr12	109179261	109179282	109179281	+	RAMPAGE_only	5	6	10	0.736897	2.646439	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109175976	109246386	STRG.98583.4	+	109175976,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178	109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246386	1.000000
spleen_female_adult_51_years	chr9	128684459	128684493	128684492	-	High_confidence	24	26	101	7.442664	5.941317	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683471	128684482	STRG.78343.1	-	128683471	128684482	0.881188
spleen_female_adult_51_years	chr14	65318729	65318790	65318729	-	High_confidence	4	4	29	2.137003	4.047299	chr14	65318645	65318866	LINE|L2|L2c	-	chr14	65253700	65318790	AL355076.2|ENST00000553754.1	-	65253700,65269444,65318490	65253906,65269512,65318790	0.655172
spleen_female_adult_51_years	chr11	65382641	65382660	65382645	-	High_confidence	20	20	53	3.905557	5.000569	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.962264
spleen_female_adult_51_years	chr19	58306123	58306147	58306141	+	High_confidence	4	4	14	1.031656	3.392747	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58315202	STRG.127489.3	+	58305376,58306087,58312196	58305445,58306216,58315202	0.571429
spleen_female_adult_51_years	chr9	121313983	121314021	121314002	+	RAMPAGE_only	27	27	55	4.052936	4.379658	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
spleen_female_adult_51_years	chr20	35605298	35605332	35605325	-	High_confidence	14	14	54	3.979246	5.495628	chr20	35605067	35605498	LINE|L2|L2c	+	chr20	35600698	35605326	FER1L4|ENST00000325076.9	-	35600698,35601531,35601805,35603009,35603258,35603796,35604303,35604529,35605101	35600924,35601718,35602751,35603141,35603319,35603967,35604345,35604621,35605326	0.796296
spleen_female_adult_51_years	chr5	180909572	180909577	180909572	+	High_confidence	26	31	39	2.873900	4.451489	chr5	180909597	180909731	SINE|Alu|FLAM_C	+	chr5	180909572	180948353	BTNL8|ENST00000514448.5	+	180909572,180911338,180947511	180909697,180911614,180948353	0.743590
spleen_female_adult_51_years	chr5	109383420	109383457	109383420	-	High_confidence	4	4	17	1.252726	2.780639	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.941176
spleen_female_adult_51_years	chr17	75742742	75742753	75742742	+	RAMPAGE_only	3	3	10	0.736897	2.646439	chr17	75742779	75742995	SINE|MIR|MIRb	+	chr17	75724695	75757818	ITGB4|NM_001005619.1	+	75724695,75727194,75727403,75727650,75728376,75729264,75730240,75730874,75731245,75731811,75732162,75733489,75736050,75736287,75736564,75737321,75737537,75739671,75739879,75740357,75740792,75740981,75742340,75742581,75743712,75748840,75750110,75750679,75750973,75752173,75752445,75754575,75755054,75755700,75756428,75756703,75756942,75757199,75757415	75724782,75727277,75727505,75727855,75728473,75729436,75730504,75730964,75731368,75731973,75732239,75733692,75736154,75736386,75736694,75737444,75737644,75739705,75740071,75740461,75740851,75741005,75742489,75742761,75743861,75749045,75750268,75750860,75751111,75752356,75752577,75754815,75755213,75755850,75756617,75756859,75757107,75757310,75757818	1.000000
spleen_female_adult_51_years	chr2	227534932	227534964	227534932	+	RAMPAGE_only	4	4	15	1.105346	3.128085	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.933333
spleen_female_adult_51_years	chr6	107872863	107872889	107872863	-	RAMPAGE_only	2	2	10	0.736897	2.725481	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.900000
spleen_female_adult_51_years	chr1	51403428	51403465	51403432	-	RAMPAGE_only	7	9	26	1.915933	3.403107	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.807692
spleen_female_adult_51_years	chr1	110871187	110871210	110871198	+	High_confidence	80	81	395	29.107450	6.604345	chr1	110870731	110871665	LINE|L2|L2b	-	chr1	110871198	110899936	CD53|NM_001040033.1	+	110871198,110873155,110891391,110892344,110894326,110894959,110896652,110897808,110899123	110871259,110873248,110891471,110892533,110894401,110895055,110896733,110897892,110899936	0.749367
spleen_female_adult_51_years	chr2	232816731	232816766	232816731	+	RAMPAGE_only	7	7	21	1.547485	3.746439	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.857143
spleen_female_adult_51_years	chr15	88635643	88635661	88635654	+	High_confidence	101	103	348	25.644032	6.955355	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303234.1	+	88635636,88636166,88639342,88652109,88655414	88635700,88636292,88639594,88652310,88656344	0.594828
spleen_female_adult_51_years	chr12	127060455	127060505	127060504	+	High_confidence	37	39	115	8.474321	5.609230	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060465	127061334	STRG.99528.1	+	127060465	127061334	0.982609
spleen_female_adult_51_years	chr4	152101055	152101094	152101080	+	High_confidence	6	6	18	1.326415	3.725481	chr4	152100876	152101312	LINE|L2|L2a	-	chr4	152100759	152101935	LINC02273|ENST00000504144.1	+	152100759,152101483	152100817,152101935	0.500000
spleen_female_adult_51_years	chr1	19344364	19344374	19344364	-	RAMPAGE_only	2	2	8	0.589518	2.521641	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.875000
spleen_female_adult_51_years	chr7	53811930	53811942	53811930	-	High_confidence	13	13	43	3.168659	4.525499	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.767442
spleen_female_adult_51_years	chr11	65181222	65181257	65181222	+	High_confidence	2	2	9	0.663208	2.947703	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	1.000000
spleen_female_adult_51_years	chr1	1655395	1655411	1655409	-	RAMPAGE_only	18	31	49	3.610798	5.069236	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.591837
spleen_female_adult_51_years	chr11	60182517	60182557	60182556	-	High_confidence	8	8	58	4.274005	5.280087	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.568966
spleen_female_adult_51_years	chr19	17197856	17197857	17197856	+	High_confidence	8	8	10	0.736897	3.121928	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	1.000000
spleen_female_adult_51_years	chr22	50541372	50541389	50541383	+	RAMPAGE_only	9	9	22	1.621174	3.697846	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	1.000000
spleen_female_adult_51_years	chr12	7502477	7502545	7502503	-	High_confidence	10	15	70	5.158282	5.284529	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.957143
spleen_female_adult_51_years	chr11	93499283	93499345	93499344	-	High_confidence	3	3	18	1.326415	2.774402	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	1.000000
spleen_female_adult_51_years	chr11	12195916	12195939	12195924	+	High_confidence	3	3	13	0.957967	2.625815	chr11	12195751	12196592	LINE|L2|L2	-	chr11	12195944	12197811	MICAL2|ENST00000532166.5	+	12195944,12197486	12196200,12197811	0.692308
spleen_female_adult_51_years	chr2	55228156	55228184	55228158	-	RAMPAGE_only	14	21	48	3.537108	4.440450	chr2	55228053	55228212	LINE|L2|L2c	+	chr2	55222271	55224398	CLHC1|ENST00000403506.1	-	55222271,55224190	55222493,55224398	0.541667
spleen_female_adult_51_years	chr3	143824476	143824564	143824563	-	RAMPAGE_only	6	6	40	2.947590	4.887716	chr3	143824344	143824714	LINE|L2|L2a	+	chr3	143646491	143848469	STRG.32436.2	-	143646491,143655493,143693191,143795000,143796825,143832018,143848147	143652360,143655591,143693307,143795077,143796903,143832221,143848469	0.725000
spleen_female_adult_51_years	chr3	15341378	15341380	15341379	-	High_confidence	5	9	9	0.663208	2.503258	chr3	15341159	15341407	LINE|L2|L2a	+	chr3	15255649	15341368	SH3BP5|ENST00000408919.7	-	15255649,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341368	0.555556
spleen_female_adult_51_years	chr4	141332616	141332617	141332616	-	High_confidence	344	345	359	26.454619	4.339609	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.955432
spleen_female_adult_51_years	chr11	43881075	43881088	43881087	+	High_confidence	12	14	53	3.905557	4.998611	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.886792
spleen_female_adult_51_years	chr11	118700419	118700498	118700497	+	High_confidence	6	6	37	2.726521	4.702565	chr11	118700359	118700777	LTR|ERVL-MaLR|MLT1H	+	chr11	118700426	118708848	AP002954.1|ENST00000646572.1	+	118700426,118704607,118708381	118700643,118704838,118708848	0.621622
spleen_female_adult_51_years	chr4	85514917	85514962	85514917	+	RAMPAGE_only	11	11	36	2.652831	4.086049	chr4	85514854	85515090	LTR|ERVL|LTR16C	-	chr4	85475442	85723732	ARHGAP24|ENST00000506421.5	+	85475442,85570521,85721884,85723280	85475559,85570721,85721972,85723732	0.750000
spleen_female_adult_51_years	chr1	167551551	167551567	167551551	-	RAMPAGE_only	4	4	17	1.252726	3.616875	chr1	167551473	167551609	SINE|MIR|MIRc	+	chr1	167541012	167553767	CREG1|ENST00000370509.4	-	167541012,167546100,167548001,167553387	167542301,167546285,167548121,167553767	0.705882
spleen_female_adult_51_years	chr6	143707921	143707922	143707921	+	High_confidence	19	22	22	1.621174	4.152391	chr6	143707720	143708120	LTR|ERVL-MaLR|MSTA	-	chr6	143707923	143831287	STRG.56494.3	+	143707923,143712015,143748984,143753753,143765260,143772257,143774058,143777327,143783218,143788772,143807056,143823673	143708093,143712183,143749065,143753912,143765798,143772457,143774215,143777383,143783280,143788910,143807133,143831287	0.954545
spleen_female_adult_51_years	chr1	6546436	6546453	6546452	-	RAMPAGE_only	4	5	15	1.105346	3.324863	chr1	6546408	6547472	LINE|L2|L2	+	chr1	6531994	6554521	STRG.320.4	-	6531994,6532462,6533279,6541829,6544825,6550395,6554106	6532079,6532760,6533441,6541927,6549698,6550615,6554521	0.933333
spleen_female_adult_51_years	chr6	149896000	149896011	149896010	-	High_confidence	5	5	10	0.736897	3.121928	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.900000
spleen_female_adult_51_years	chr8	47360804	47360819	47360804	+	High_confidence	13	13	27	1.989623	3.844107	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47440397	SPIDR|ENST00000521918.6	+	47360818,47396375,47407860,47440322	47360949,47396626,47407961,47440397	0.703704
spleen_female_adult_51_years	chr11	14325268	14325278	14325268	-	RAMPAGE_only	6	6	14	1.031656	3.182006	chr11	14325155	14325289	SINE|MIR|MIR	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.785714
spleen_female_adult_51_years	chr13	84086738	84086760	84086745	+	RAMPAGE_only	3	3	8	0.589518	2.807355	chr13	84085604	84086932	LTR|ERV1|LTR12C	-	chr13	84140601	84606768	LINC00333|NR_046871.1	+	84140601,84238539,84242062,84562363,84562608,84562791,84606705	84140643,84238600,84242097,84562463,84562676,84563234,84606768	0.500000
spleen_female_adult_51_years	chr12	9965320	9965325	9965320	+	RAMPAGE_only	52	56	77	5.674110	5.266755	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971504	9995694	CLEC12A|ENST00000449959.6	+	9971504,9978965,9980581,9982019,9995017	9971687,9979524,9980733,9982129,9995694	0.662338
spleen_female_adult_51_years	chr5	177431710	177431727	177431720	+	High_confidence	16	17	54	3.979246	4.614344	chr5	177431745	177431876	SINE|MIR|MIRb	+	chr5	177431710	177442064	GRK6|ENST00000515666.5	+	177431710,177432232,177432705,177433146,177433346,177433535,177433913,177434901,177435031,177436072,177436392,177440699,177440918,177441736	177432107,177432310,177432806,177433239,177433410,177433676,177434104,177434939,177435121,177436281,177436530,177440837,177441053,177442064	0.962963
spleen_female_adult_51_years	chr3	50312627	50312652	50312651	-	High_confidence	3	3	11	0.810587	3.095795	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50302748	50312993	STRG.27392.7	-	50302748,50303465,50303787,50309658	50302980,50303563,50303953,50312993	1.000000
spleen_female_adult_51_years	chr21	34512312	34512316	34512314	-	High_confidence	4	9	13	0.957967	3.418296	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34446687	34512275	KCNE1|NM_000219.5	-	34446687,34458653,34511100,34512026	34449684,34458764,34511315,34512275	0.615385
spleen_female_adult_51_years	chr14	85934665	85934710	85934700	+	High_confidence	16	19	84	6.189939	5.129149	chr14	85934517	85934812	LTR|ERV1|LTR12F	+	chr14	85934637	85935832	STRG.106900.1	+	85934637	85935832	0.678571
spleen_female_adult_51_years	chr5	150103458	150103496	150103458	-	RAMPAGE_only	3	3	14	1.031656	3.378783	chr5	150103287	150103597	LINE|CR1|L3	-	chr5	150053290	150113372	CSF1R|NM_005211.3	-	150053290,150054321,150055236,150056025,150056218,150057286,150057503,150059699,150060861,150061490,150061722,150068214,150069872,150070181,150070455,150073300,150077275,150078111,150080051,150080766,150086378,150113260	150054224,150054430,150055336,150056137,150056341,150057384,150057592,150059862,150060972,150061595,150061849,150068330,150070063,150070302,150070571,150073493,150077435,150078248,150080336,150081024,150086607,150113372	0.500000
spleen_female_adult_51_years	chr6	113649568	113649598	113649568	-	High_confidence	3	3	10	0.736897	2.646439	chr6	113649538	113649782	SINE|MIR|MIRc	-	chr6	113623534	113650074	LINC02541|ENST00000427157.1	-	113623534,113627520,113650014	113623646,113627675,113650074	0.500000
spleen_female_adult_51_years	chr8	24324974	24324976	24324975	+	High_confidence	86	122	144	10.611324	5.594627	chr8	24324695	24325068	LTR|ERVL-MaLR|MLT1H1	-	chr8	24325036	24332725	ADAM28|ENST00000521110.1	+	24325036,24326553,24329984,24331149,24332659	24325089,24326635,24330115,24331327,24332725	0.756944
spleen_female_adult_51_years	chr3	114624964	114625034	114625006	-	High_confidence	28	33	138	10.169185	5.459994	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.804348
spleen_female_adult_51_years	chr6	34485031	34485061	34485031	+	High_confidence	2	2	8	0.589518	2.500000	chr6	34484812	34485093	LINE|L2|L2a	-	chr6	34485069	34527714	PACSIN1|ENST00000493633.5	+	34485069,34526242,34527331	34485144,34526368,34527714	1.000000
spleen_female_adult_51_years	chr1	183590905	183590914	183590910	-	High_confidence	12	12	28	2.063313	4.307355	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.750000
spleen_female_adult_51_years	chr4	158173024	158173025	158173024	-	High_confidence	35	37	42	3.094969	4.580023	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.690476
spleen_female_adult_51_years	chr1	166850285	166850310	166850285	+	RAMPAGE_only	2	2	11	0.810587	3.277613	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166845685	166856344	STRG.8531.4	+	166845685,166848937	166847592,166856344	1.000000
spleen_female_adult_51_years	chr20	44671698	44671727	44671698	-	High_confidence	3	4	14	1.031656	3.324863	chr20	44671177	44675874	LTR|ERV1|HERVH-int	+	chr20	44656450	44671739	LINC01260|NR_034104.1	-	44656450,44658994,44659710,44663353,44671638	44657051,44659181,44659778,44663553,44671739	0.500000
spleen_female_adult_51_years	chr17	336642	336686	336664	-	High_confidence	3	3	13	0.957967	3.238901	chr17	336507	336888	LINE|L2|L2	+	chr17	332032	336679	STRG.116143.12	-	332032,336349	333934,336679	0.923077
spleen_female_adult_51_years	chr9	41007217	41007238	41007237	+	RAMPAGE_only	5	5	9	0.663208	2.500000	chr9	41007186	41007588	LINE|L1|L1HS	+	chr9	40992316	41020563	STRG.74901.3	+	40992316,40994632,41007439,41008880,41011616,41013780	40993434,40994699,41007609,41009006,41011730,41020563	0.555556
spleen_female_adult_51_years	chr9	134373102	134373106	134373105	+	RAMPAGE_only	17	19	46	3.389728	4.774861	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134371970	134440585	RXRA|ENST00000356384.4	+	134371970,134374006,134401395,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134372139,134374130,134401540,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440585	0.847826
spleen_female_adult_51_years	chr17	64342049	64342060	64342049	-	RAMPAGE_only	3	3	11	0.810587	2.550341	chr17	64341867	64342175	SINE|Alu|AluSz	+	chr17	64319414	64390878	PECAM1|NM_000442.4	-	64319414,64329699,64341633,64348259,64350379,64352389,64353490,64354932,64356110,64360139,64363148,64369749,64375050,64377823,64390488,64390601	64323845,64329722,64341690,64348322,64350433,64352463,64353518,64355040,64356398,64360415,64363397,64370025,64375356,64378117,64390515,64390878	1.000000
spleen_female_adult_51_years	chr5	50443293	50443319	50443318	-	High_confidence	19	19	43	3.168659	4.830692	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.744186
spleen_female_adult_51_years	chr1	97904654	97904676	97904654	-	RAMPAGE_only	12	14	34	2.505451	4.657882	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.617647
spleen_female_adult_51_years	chr7	102973491	102973515	102973491	+	High_confidence	9	9	28	2.063313	4.253434	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973521	102988856	NFE4|ENST00000420058.1	+	102973521,102978380,102988032,102988374	102973771,102978520,102988232,102988856	0.714286
spleen_female_adult_51_years	chr7	45027005	45027021	45027005	+	High_confidence	3	4	7	0.515828	2.521641	chr7	45026988	45027096	SINE|MIR|MIR3	-	chr7	45027025	45076451	CCM2|ENST00000475551.5	+	45027025,45038252,45063917,45064462,45068442,45069825,45072725,45073459,45074269,45075776	45027797,45038426,45064001,45064646,45068579,45069961,45072783,45073571,45074408,45076451	1.000000
spleen_female_adult_51_years	chr17	8310249	8310250	8310249	+	High_confidence	4	4	7	0.515828	2.521641	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.571429
spleen_female_adult_51_years	chr3	28291847	28291848	28291847	+	High_confidence	110	118	122	8.990149	5.583551	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28319741	STRG.26130.2	+	28291800,28294433,28298218,28316332,28319508	28292964,28294529,28298350,28316423,28319741	0.909836
spleen_female_adult_51_years	chr2	72693342	72693354	72693353	-	RAMPAGE_only	48	50	82	6.042559	4.892931	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.939024
spleen_female_adult_51_years	chr22	50756826	50756897	50756878	+	High_confidence	2	2	10	0.736897	2.921928	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.700000
spleen_female_adult_51_years	chr2	96638011	96638031	96638011	-	High_confidence	2	2	8	0.589518	2.521641	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.750000
spleen_female_adult_51_years	chr8	144012228	144012278	144012228	+	High_confidence	5	7	19	1.400105	3.614369	chr8	144011998	144012361	LINE|L2|L2b	-	chr8	144012265	144040414	STRG.72813.1	+	144012265,144039908	144012726,144040414	0.947368
spleen_female_adult_51_years	chr11	1883348	1883366	1883348	+	RAMPAGE_only	2	2	8	0.589518	2.500000	chr11	1883278	1883384	SINE|MIR|MIR1_Amn	-	chr11	1880676	1892267	LSP1|ENST00000485341.5	+	1880676,1881431,1883418,1883931,1884279,1884499,1886731,1887236,1887473,1891772	1881363,1881596,1883560,1884024,1884323,1884581,1886866,1887314,1887576,1892267	0.750000
spleen_female_adult_51_years	chr7	101217578	101217599	101217578	-	High_confidence	3	4	21	1.547485	3.984184	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.952381
spleen_female_adult_51_years	chr6	31587201	31587275	31587201	+	High_confidence	141	148	493	36.329045	5.608746	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000376093.6	+	31587199,31587640,31587943,31588496	31587318,31587733,31587966,31588909	0.967546
spleen_female_adult_51_years	chr19	32991439	32991453	32991452	-	High_confidence	6	6	13	0.957967	3.418296	chr19	32991175	32991482	SINE|Alu|AluSc8	+	chr19	32979790	32991417	RHPN2|ENST00000588683.1	-	32979790,32990513,32991333	32980256,32990669,32991417	0.923077
spleen_female_adult_51_years	chr2	85777704	85777713	85777704	+	RAMPAGE_only	6	7	21	1.547485	3.826875	chr2	85777710	85777843	LINE|L2|L2c	+	chr2	85781033	85788039	ATOH8|ENST00000489682.1	+	85781033,85786884	85781166,85788039	0.761905
spleen_female_adult_51_years	chr8	129548490	129548517	129548490	-	High_confidence	3	4	13	0.957967	2.522055	chr8	129548487	129548594	SINE|MIR|MIRc	-	chr8	129547097	129548677	STRG.72154.5	-	129547097	129548677	0.692308
spleen_female_adult_51_years	chr6	143707968	143707973	143707972	+	High_confidence	48	56	147	10.832393	5.780655	chr6	143707720	143708120	LTR|ERVL-MaLR|MSTA	-	chr6	143707923	143831287	STRG.56494.3	+	143707923,143712015,143748984,143753753,143765260,143772257,143774058,143777327,143783218,143788772,143807056,143823673	143708093,143712183,143749065,143753912,143765798,143772457,143774215,143777383,143783280,143788910,143807133,143831287	0.945578
spleen_female_adult_51_years	chr11	287926	287941	287940	+	High_confidence	5	5	15	1.105346	3.378783	chr11	287740	288214	LINE|L2|L2a	-	chr11	288037	288987	AC136475.3|ENST00000534742.1	+	288037,288949	288811,288987	0.933333
spleen_female_adult_51_years	chr2	37599931	37599932	37599931	+	High_confidence	9	9	11	0.810587	3.121928	chr2	37594197	37600327	LINE|L1|L1PA6	-	chr2	37599907	37601126	STRG.14700.1	+	37599907	37601126	0.727273
spleen_female_adult_51_years	chr10	102727667	102727692	102727667	+	RAMPAGE_only	4	4	19	1.400105	3.932138	chr10	102727660	102728003	LINE|L2|L2c	-	chr10	102714635	102739189	SFXN2|ENST00000459894.6	+	102714635,102724935,102726611,102726986,102728430,102729722,102732858,102733553,102735861,102737662	102714681,102724996,102726797,102727157,102728529,102729808,102732908,102733603,102735909,102739189	0.526316
spleen_female_adult_51_years	chr13	24284218	24284268	24284218	+	RAMPAGE_only	5	6	21	1.547485	3.880180	chr13	24284180	24284220	LINE|CR1|L3	+	chr13	24270687	24303904	SPATA13|ENST00000399949.6	+	24270687,24284134,24286213,24286764,24288998,24290651,24294738,24297362,24300400,24302597	24270912,24284271,24286393,24286950,24289178,24290884,24294868,24297735,24300475,24303904	1.000000
spleen_female_adult_51_years	chr2	240022172	240022182	240022181	-	RAMPAGE_only	7	7	16	1.179036	2.875000	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
spleen_female_adult_51_years	chr2	143247289	143247353	143247289	+	RAMPAGE_only	10	10	31	2.284382	4.573557	chr2	143246994	143247508	LTR|ERVL|LTR32	+	chr2	143129329	143768352	ARHGAP15|NM_018460.3	+	143129329,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.677419
spleen_female_adult_51_years	chr3	9109567	9109616	9109598	-	High_confidence	8	8	32	2.358072	3.949699	chr3	9109543	9109955	LINE|L2|L2c	-	chr3	9053027	9109672	STRG.25177.1	-	9053027,9056232,9058250,9060230,9064395,9080024,9104679,9109456	9053224,9056334,9058472,9060359,9064581,9080087,9104842,9109672	0.718750
spleen_female_adult_51_years	chr8	24387516	24387534	24387516	-	High_confidence	13	13	29	2.137003	4.110577	chr8	24386908	24387825	LTR|ERVK|HERVK22-int	-	chr8	24295813	24387515	AC120193.1|ENST00000518988.5	-	24295813,24296153,24300884,24387160	24296057,24296250,24300929,24387515	0.758621
spleen_female_adult_51_years	chr3	189121289	189121313	189121294	+	RAMPAGE_only	7	7	27	1.989623	3.250103	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.703704
spleen_female_adult_51_years	chr12	122889180	122889181	122889180	-	High_confidence	4	5	7	0.515828	2.521641	chr12	122889046	122889227	LINE|L2|L2b	-	chr12	122870058	122888720	AC027290.2|ENST00000623210.1	-	122870058	122888720	0.857143
spleen_female_adult_51_years	chr6	7934996	7935010	7934996	-	RAMPAGE_only	4	4	15	1.105346	3.240224	chr6	7934816	7935175	LTR|ERVL-MaLR|MLT1A0	-	chr6	7881249	7910814	TXNDC5|NM_030810.3	-	7881249,7884358,7885960,7888704,7889494,7891620,7895105,7899575,7904573,7910513	7883266,7884488,7886043,7888848,7889581,7891736,7895202,7899681,7904723,7910814	0.666667
spleen_female_adult_51_years	chr1	222737198	222737222	222737215	+	High_confidence	40	50	113	8.326941	5.625916	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737215	222750805	FAM177B|ENST00000391880.6	+	222737215,222737877,222746530,222747014,222748960,222749920	222737322,222738021,222746719,222747081,222749562,222750805	0.814159
spleen_female_adult_51_years	chr16	15798664	15798670	15798664	-	RAMPAGE_only	10	12	18	1.326415	3.337175	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.833333
spleen_female_adult_51_years	chr11	82971649	82971650	82971649	+	High_confidence	144	145	149	10.979772	5.551451	chr11	82970491	82971932	LTR|ERV1|LTR12C	+	chr11	82971662	82973343	STRG.88405.1	+	82971662	82973343	0.966443
spleen_female_adult_51_years	chr9	129489101	129489126	129489125	+	High_confidence	6	6	12	0.884277	2.845351	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.916667
spleen_female_adult_51_years	chr21	45593675	45593678	45593675	+	High_confidence	3	3	7	0.515828	2.521641	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593677	45597091	LINC01694|ENST00000424569.1	+	45593677,45595572,45596390	45593708,45595661,45597091	1.000000
spleen_female_adult_51_years	chr5	154038408	154038409	154038408	-	High_confidence	9	9	14	1.031656	3.467720	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.642857
spleen_female_adult_51_years	chr6	13261094	13261106	13261105	+	RAMPAGE_only	6	7	13	0.957967	3.392747	chr6	13260907	13261111	DNA|hAT-Charlie|MER20	-	chr6	13272211	13286197	PHACTR1|ENST00000489548.1	+	13272211,13272859,13278267,13283421,13286145	13272468,13272915,13278329,13283562,13286197	0.692308
spleen_female_adult_51_years	chr6	57961641	57961648	57961647	+	High_confidence	5	5	10	0.736897	2.646439	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961437	57973690	AL445250.1|ENST00000641671.1	+	57961437,57962180,57965516,57971594,57972093	57961742,57962248,57965743,57971656,57973690	0.600000
spleen_female_adult_51_years	chr1	40388737	40388738	40388737	+	RAMPAGE_only	275	276	344	25.349273	4.864064	chr1	40387671	40389155	LTR|ERV1|LTR12C	+	chr1	40373696	40399272	STRG.2109.6	+	40373696,40387889	40387834,40399272	0.970930
spleen_female_adult_51_years	chr1	6487896	6487914	6487913	-	RAMPAGE_only	8	8	14	1.031656	3.546594	chr1	6487489	6487914	LINE|L2|L2a	+	chr1	6466091	6485954	PLEKHG5|NM_001042665.1	-	6466091,6467824,6469041,6469334,6469543,6470235,6470505,6470734,6470989,6471487,6471757,6472526,6472985,6473250,6474012,6474450,6475046,6475461,6475930,6477528,6485835	6467572,6468586,6469241,6469450,6469676,6470355,6470643,6470884,6471100,6471637,6471808,6472622,6473174,6473454,6474164,6474587,6475138,6475522,6476036,6477658,6485954	0.785714
spleen_female_adult_51_years	chr11	73269969	73270091	73270090	+	High_confidence	26	26	133	9.800736	5.514757	chr11	73270078	73270271	SINE|MIR|MIRc	-	chr11	73269893	73297805	P2RY6|ENST00000393591.5	+	73269893,73272306,73295729,73296484	73270155,73272466,73295815,73297805	0.969925
spleen_female_adult_51_years	chr8	118282301	118282313	118282301	+	High_confidence	5	5	14	1.031656	3.182006	chr8	118282102	118282313	SINE|MIR|MIRc	-	chr8	118282157	118296462	STRG.71461.1	+	118282157,118284271,118288238,118291212,118295674	118282330,118284421,118288325,118291346,118296462	0.500000
spleen_female_adult_51_years	chr5	150118771	150118789	150118788	-	RAMPAGE_only	4	4	9	0.663208	2.750000	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.888889
spleen_female_adult_51_years	chr11	57092348	57092398	57092397	-	High_confidence	5	5	23	1.694864	4.229871	chr11	57091950	57092364	LINE|L1|L1PA10	-	chr11	56964661	57092232	STRG.86838.8	-	56964661,57091973	57005902,57092232	0.521739
spleen_female_adult_51_years	chr11	123060124	123060229	123060168	-	High_confidence	61	64	311	22.917511	5.403481	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.514469
spleen_female_adult_51_years	chr9	77945016	77945041	77945034	-	RAMPAGE_only	4	4	16	1.179036	3.506891	chr9	77944910	77945186	DNA|TcMar-Tigger|Tigger19b	+	chr9	77716273	78031449	GNAQ|NM_002072.4	-	77716273,77728513,77794462,77797519,77815615,77922160,78031099	77721513,77728667,77794592,77797648,77815770,77922345,78031449	0.500000
spleen_female_adult_51_years	chr16	4239730	4239749	4239748	-	High_confidence	18	19	34	2.505451	4.256515	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.647059
spleen_female_adult_51_years	chr9	76608877	76608904	76608903	+	High_confidence	112	113	270	19.896232	5.145403	chr9	76608739	76609168	LTR|ERVL-MaLR|MLT1F2	+	chr9	76608569	76612290	STRG.75658.6	+	76608569	76612290	0.885185
spleen_female_adult_51_years	chr5	119420314	119420315	119420314	+	RAMPAGE_only	9	9	12	0.884277	3.418296	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.583333
spleen_female_adult_51_years	chr1	235980496	235980517	235980496	-	RAMPAGE_only	4	4	14	1.031656	3.546594	chr1	235980226	235980447	DNA|hAT-Charlie|MER58C	-	chr1	235975829	236065109	NID1|ENST00000366595.7	-	235975829,235978994,235979821,235980495,235981610,235985378,235990885,235993644,236024069,236025895,236029549,236032400,236038103,236041909,236045456,236048689,236064854	235977988,235979107,235979945,235980653,235981782,235985505,235991058,235993872,236024213,236026141,236029750,236032652,236038253,236042292,236045683,236048989,236065109	0.785714
spleen_female_adult_51_years	chr1	160739078	160739094	160739078	+	High_confidence	4	4	9	0.663208	2.641604	chr1	160738592	160739182	LINE|L1|L1MDa	+	chr1	160739056	160754821	SLAMF7|NM_021181.4	+	160739056,160748193,160749820,160750303,160751344,160752185,160753105	160739356,160748514,160750093,160750423,160751448,160752248,160754821	1.000000
spleen_female_adult_51_years	chr3	47715298	47715313	47715312	-	RAMPAGE_only	3	3	7	0.515828	2.521641	chr3	47714857	47715948	LINE|L2|L2a	+	chr3	47678195	47701654	SMARCC1|ENST00000462198.5	-	47678195,47680436,47686048,47689386,47693240,47701277	47678311,47680508,47686170,47689424,47693300,47701654	0.571429
spleen_female_adult_51_years	chr17	75498252	75498258	75498252	+	High_confidence	2	2	9	0.663208	2.947703	chr17	75498201	75498275	LINE|L2|L2-1_Crp	+	chr17	75498216	75498814	TMEM94|ENST00000577194.1	+	75498216,75498443	75498323,75498814	0.777778
spleen_female_adult_51_years	chr2	110780697	110780727	110780697	+	RAMPAGE_only	13	15	34	2.505451	4.718488	chr2	110779462	110780748	LINE|L1|L1ME2	+	chr2	110732854	110793700	ACOXL|ENST00000448863.1	+	110732854,110768367,110784731,110793649	110733108,110768464,110784815,110793700	0.676471
spleen_female_adult_51_years	chr6	11728514	11728555	11728545	-	High_confidence	5	5	28	2.063313	4.014147	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.642857
spleen_female_adult_51_years	chr15	83179178	83179179	83179178	+	RAMPAGE_only	9	9	11	0.810587	2.921928	chr15	83178896	83179386	LTR|ERVL|LTR53	+	chr15	83180801	83184796	AC103876.1|ENST00000561498.1	+	83180801,83184647	83181021,83184796	0.545455
spleen_female_adult_51_years	chr5	112521510	112521521	112521517	+	RAMPAGE_only	6	10	30	2.210692	4.056565	chr5	112518481	112523901	LINE|L1|L1PBa1	-	chr5	112524440	112532457	STRG.45580.2	+	112524440,112529836	112524609,112532457	0.900000
spleen_female_adult_51_years	chr11	64799866	64799885	64799884	-	High_confidence	9	9	24	1.768554	4.251629	chr11	64799729	64799896	SINE|MIR|MIR	-	chr11	64789888	64799659	MAP4K2|ENST00000489952.5	-	64789888,64790187,64790393,64791908,64792171,64796272,64796492,64796633,64796808,64796981,64797103,64797274,64797500,64797625,64798793,64799420,64799604	64789959,64790274,64790462,64792086,64792422,64796390,64796553,64796713,64796893,64797023,64797192,64797380,64797534,64797664,64798837,64799479,64799659	0.791667
spleen_female_adult_51_years	chr7	150567246	150567288	150567272	+	High_confidence	8	8	24	1.768554	4.334963	chr7	150567129	150567290	DNA|hAT-Charlie|MER3	-	chr7	150567276	150573955	GIMAP4|ENST00000255945.3	+	150567276,150569887,150572128	150567437,150569959,150573955	1.000000
spleen_female_adult_51_years	chr9	39809852	39809879	39809858	-	High_confidence	10	13	37	2.726521	4.378240	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807380	39810058	GLIDR|ENST00000618092.2	-	39807380,39809730	39809633,39810058	0.567568
spleen_female_adult_51_years	chr21	41836879	41836888	41836887	-	High_confidence	6	6	10	0.736897	3.169925	chr21	41836880	41837100	LINE|RTE-X|L4_B_Mam	+	chr21	41825976	41836894	PRDM15|ENST00000489661.5	-	41825976,41828165,41835436,41836112,41836467	41826054,41828333,41835524,41836207,41836894	0.800000
spleen_female_adult_51_years	chr7	131522770	131522793	131522792	-	RAMPAGE_only	3	3	9	0.663208	2.725481	chr7	131522684	131523276	LINE|L1|L1MB8	-	chr7	131500261	131556563	PODXL|ENST00000446198.5	-	131500261,131505867,131506259,131506578,131508950,131510827,131556259	131504508,131506035,131506321,131506726,131509585,131511433,131556563	1.000000
spleen_female_adult_51_years	chr5	34244811	34244816	34244811	-	High_confidence	9	9	22	1.621174	3.784942	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34173384	34244858	STRG.41865.4	-	34173384,34175821,34179012,34182679,34218294,34244615	34175537,34175957,34179097,34182867,34218450,34244858	0.772727
spleen_female_adult_51_years	chr19	44914313	44914322	44914321	+	High_confidence	32	34	53	3.905557	4.903420	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914246	44919342	APOC1|ENST00000588750.5	+	44914246,44914671,44914871,44916189,44919172	44914489,44914733,44914949,44916325,44919342	0.886792
spleen_female_adult_51_years	chr11	111097319	111097344	111097337	-	High_confidence	5	6	24	1.768554	3.468577	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.833333
spleen_female_adult_51_years	chr14	23636366	23636367	23636366	+	High_confidence	19	19	19	1.400105	3.721612	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	0.947368
spleen_female_adult_51_years	chr22	22572534	22572535	22572534	+	RAMPAGE_only	8	8	8	0.589518	3.000000	chr22	22572513	22572648	SINE|Alu|AluJr	-	chr22	22758699	22895825	STRG.132587.5	+	22758699,22758903,22893776,22895374	22758786,22759206,22893818,22895825	0.875000
spleen_female_adult_51_years	chrX	5726193	5726242	5726193	-	High_confidence	23	24	67	4.937213	5.241068	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5719307	5726213	STRG.134367.1	-	5719307,5725929	5719872,5726213	0.955224
spleen_female_adult_51_years	chr21	28836766	28836786	28836766	-	High_confidence	7	7	32	2.358072	4.284684	chr21	28834144	28838252	LINE|L1|L1PB1	+	chr21	28821220	28836768	STRG.130741.4	-	28821220,28836736	28821973,28836768	0.718750
spleen_female_adult_51_years	chr6	33301376	33301402	33301376	-	RAMPAGE_only	2	2	8	0.589518	2.807355	chr6	33301291	33301595	SINE|Alu|AluSx	+	chr6	33299693	33314387	TAPBP|ENST00000434618.6	-	33299693,33303954,33304127,33304296,33304988,33313216,33313693,33314004	33301771,33303989,33304217,33304638,33305387,33313477,33313864,33314387	0.875000
spleen_female_adult_51_years	chr7	154928492	154928504	154928503	+	High_confidence	32	32	53	3.905557	5.079965	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.830189
spleen_female_adult_51_years	chr14	101120850	101120864	101120852	+	High_confidence	6	10	28	2.063313	4.521641	chr14	101120596	101120905	LTR|ERVL-MaLR|MLT1J2	-	chr14	101120855	101123542	LINC02285|ENST00000557121.1	+	101120855,101122888	101121144,101123542	0.714286
spleen_female_adult_51_years	chr21	41430585	41430606	41430585	+	RAMPAGE_only	9	9	16	1.179036	3.327820	chr21	41429929	41430715	DNA|hAT-Charlie|Charlie2b	+	chr21	41431713	41459214	MX1|ENST00000288383.10	+	41431713,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41432175,41435960,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	1.000000
spleen_female_adult_51_years	chr14	92750387	92750388	92750387	+	High_confidence	357	361	368	27.117827	5.639580	chr14	92750088	92750739	LTR|ERV1|LTR12	+	chr14	92750400	92750677	STRG.107375.1	+	92750400	92750677	0.665761
spleen_female_adult_51_years	chr15	93863033	93863066	93863065	+	High_confidence	18	18	59	4.347695	5.518071	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863051	93868276	STRG.112562.2	+	93863051,93865373	93863216,93868276	0.745763
spleen_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	43	44	44	3.242349	3.695948	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.954545
spleen_female_adult_51_years	chr6	106098032	106098092	106098090	+	High_confidence	5	8	23	1.694864	3.594466	chr6	106098107	106098187	LINE|L2|L2	+	chr6	106098605	106105038	PRDM1|ENST00000450060.5	+	106098605,106099299,106104824	106098721,106099552,106105038	0.608696
spleen_female_adult_51_years	chr14	50756879	50756943	50756942	-	RAMPAGE_only	5	5	29	2.137003	4.168326	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50739371	50760476	STRG.105185.10	-	50739371,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50759856	50739487,50741728,50743529,50744365,50748105,50752733,50754632,50758630,50760476	1.000000
spleen_female_adult_51_years	chr7	131108707	131108708	131108707	-	High_confidence	58	59	63	4.642454	4.988482	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944174	131109484	STRG.65046.8	-	130944174,130945719,130984052,131052424,131107719	130944889,130945835,130984109,131052555,131109484	0.984127
spleen_female_adult_51_years	chr1	77169312	77169313	77169312	-	High_confidence	6	6	8	0.589518	2.750000	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77092201	77169319	PIGK|ENST00000487906.5	-	77092201,77122274,77154448,77161294,77161593,77163845,77169259	77092490,77122359,77154621,77161405,77161711,77163942,77169319	0.625000
spleen_female_adult_51_years	chr3	48479511	48479546	48479511	-	High_confidence	4	4	17	1.252726	3.452820	chr3	48479425	48479570	LINE|L1|L1M4	+	chr3	48469359	48479559	SHISA5|ENST00000486344.5	-	48469359,48469727,48479176	48469573,48469843,48479559	0.941176
spleen_female_adult_51_years	chr3	122183619	122183658	122183657	+	High_confidence	15	16	50	3.684487	4.878563	chr3	122183547	122183832	LINE|L2|L2c	-	chr3	122183682	122286497	CASR|NM_000388.3	+	122183682,122253947,122257080,122261527,122275811,122282112,122283686	122183812,122254374,122257387,122262412,122276042,122282236,122286497	0.680000
spleen_female_adult_51_years	chr2	37599897	37599900	37599899	+	High_confidence	15	31	32	2.358072	3.561898	chr2	37594197	37600327	LINE|L1|L1PA6	-	chr2	37599907	37601126	STRG.14700.1	+	37599907	37601126	0.937500
spleen_female_adult_51_years	chrX	7147287	7147288	7147287	+	High_confidence	9	9	12	0.884277	3.418296	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.916667
spleen_female_adult_51_years	chr12	4580863	4580864	4580863	+	RAMPAGE_only	8	8	10	0.736897	2.646439	chr12	4580796	4580870	LINE|RTE-X|L4_C_Mam	+	chr12	4590071	4597173	DYRK4|NR_104115.1	+	4590071,4590329,4591159,4593001,4596148,4596588	4590207,4590554,4591298,4593165,4596445,4597173	0.800000
spleen_female_adult_51_years	chr8	11493990	11494028	11493990	+	High_confidence	11	14	83	6.116249	5.768959	chr8	11493862	11494036	SINE|MIR|MIRb	-	chr8	11494000	11564604	BLK|ENST00000259089.8	+	11494000,11543223,11546051,11548031,11549023,11550158,11554742,11555331,11556657,11557961,11561301,11562978,11563902	11494591,11543347,11546103,11548125,11549122,11550262,11554889,11555484,11556837,11558038,11561452,11563110,11564604	0.939759
spleen_female_adult_51_years	chr2	191682564	191682576	191682575	+	RAMPAGE_only	3	3	8	0.589518	2.521641	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191686157	STRG.21741.13	+	191678989,191681945,191684229	191679128,191683804,191686157	0.875000
spleen_female_adult_51_years	chr20	48684689	48684745	48684719	-	RAMPAGE_only	6	6	25	1.842244	3.909275	chr20	48684672	48685218	LINE|L2|L2a	+	chr20	48624251	48827883	PREX1|ENST00000371941.3	-	48624251,48627547,48627860,48629448,48630727,48632276,48632495,48634675,48636462,48637710,48639765,48642167,48642406,48644408,48645850,48649299,48649995,48650893,48651395,48652585,48653360,48655289,48657039,48658135,48659918,48666282,48676192,48679359,48679650,48681234,48688656,48690946,48692671,48700752,48708259,48726289,48734545,48745024,48747808,48827641	48625927,48627615,48627963,48629621,48630794,48632391,48632639,48634775,48636683,48637752,48639894,48642258,48642489,48644497,48646057,48649576,48650206,48651055,48651583,48652706,48653497,48655375,48657188,48658228,48660061,48666355,48676268,48679409,48679754,48681335,48688804,48691096,48692790,48700886,48708421,48726391,48734650,48745147,48747880,48827883	1.000000
spleen_female_adult_51_years	chr5	42837642	42837679	42837678	-	RAMPAGE_only	4	7	15	1.105346	3.378783	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.733333
spleen_female_adult_51_years	chr4	85514998	85514999	85514998	+	RAMPAGE_only	4	4	7	0.515828	2.521641	chr4	85514854	85515090	LTR|ERVL|LTR16C	-	chr4	85475237	85972367	ARHGAP24|ENST00000503995.5	+	85475237,85570521,85721884,85923647,85942065,85972035	85475559,85570721,85721972,85923770,85942273,85972367	0.571429
spleen_female_adult_51_years	chr19	9709659	9709660	9709659	+	High_confidence	94	94	103	7.590044	4.806449	chr19	9709309	9709779	LTR|ERV1|LTR10A	+	chr19	9709605	9722170	STRG.123916.1	+	9709605,9719542	9709992,9722170	0.922330
spleen_female_adult_51_years	chr8	143281650	143281687	143281686	-	High_confidence	10	11	34	2.505451	4.035274	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143281069	143281665	MINCR|ENST00000524335.1	-	143281069,143281481	143281384,143281665	0.500000
spleen_female_adult_51_years	chr19	39335646	39335673	39335672	-	High_confidence	7	8	21	1.547485	3.916127	chr19	39335628	39335746	DNA|hAT-Tip100|MER91A	-	chr19	39328358	39335531	GMFG|ENST00000596583.5	-	39328358,39328999,39329547,39333076,39335434	39328548,39329073,39329626,39333126,39335531	0.619048
spleen_female_adult_51_years	chr1	7913248	7913268	7913267	-	RAMPAGE_only	79	81	228	16.801262	5.947143	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.565789
spleen_female_adult_51_years	chr13	100213862	100213905	100213892	+	RAMPAGE_only	20	20	126	9.284908	5.809665	chr13	100212683	100214433	LINE|L1|L1MA3	-	chr13	100102898	100330672	PCCA|ENST00000636420.1	+	100102898,100111840,100111992,100154978,100157286,100209331,100235841,100257594,100262728,100268688,100273195,100301459,100302923,100307191,100309832,100330560	100102960,100111888,100112061,100155092,100157340,100209463,100235878,100257673,100262831,100268783,100273346,100301603,100302996,100307260,100309908,100330672	0.880952
spleen_female_adult_51_years	chr11	65639861	65639895	65639861	+	High_confidence	8	9	35	2.579141	4.436007	chr11	65639882	65640011	SINE|MIR|MIRc	+	chr11	65639865	65650880	SIPA1|ENST00000527525.5	+	65639865,65640830,65642249,65642462,65644954,65645853,65646220,65646455,65646969,65647383,65649261,65649560,65649756,65649949,65650137,65650400,65650568	65640021,65641600,65642377,65642639,65645129,65645957,65646378,65646663,65647065,65647658,65649480,65649672,65649865,65650051,65650192,65650479,65650880	0.942857
spleen_female_adult_51_years	chr9	111284874	111284875	111284874	-	High_confidence	63	64	74	5.453041	4.889336	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.878378
spleen_female_adult_51_years	chr8	109063444	109063472	109063471	-	High_confidence	3	3	9	0.663208	3.000000	chr8	109063401	109063567	SINE|MIR|MIR	+	chr8	108895028	109063417	AC104248.1|ENST00000522244.1	-	108895028,108918536,109043676,109044055,109063288	108895135,108918646,109043739,109044127,109063417	0.555556
spleen_female_adult_51_years	chr5	157107336	157107337	157107336	-	High_confidence	4	5	7	0.515828	2.807355	chr5	157107099	157107287	DNA|hAT-Charlie|MER5A	-	chr5	157106653	157107302	HAVCR2|ENST00000517358.1	-	157106653,157107045	157106962,157107302	0.571429
spleen_female_adult_51_years	chr2	218549809	218549810	218549809	-	RAMPAGE_only	4	4	7	0.515828	2.521641	chr2	218549464	218549763	SINE|Alu|AluSx	-	chr2	218454814	218568291	USP37|ENST00000418019.5	-	218454814,218455579,218457091,218459789,218463305,218466009,218474629,218476839,218479649,218482069,218485663,218488303,218495759,218497733,218498025,218509978,218529955,218534608,218546220,218546918,218549808,218553552,218558497,218560819,218562717,218568177	218455017,218455718,218457161,218459905,218463366,218466176,218474885,218476981,218479715,218482234,218485743,218488421,218495950,218497857,218498157,218510140,218530040,218534706,218546298,218547091,218549909,218553724,218558677,218560883,218562813,218568291	1.000000
spleen_female_adult_51_years	chr1	235865123	235865150	235865123	-	RAMPAGE_only	7	7	18	1.326415	3.454822	chr1	235864944	235865509	LINE|L2|L2a	+	chr1	235709105	235866876	STRG.12186.2	-	235709105,235712056,235715200,235716711,235720660,235724027,235728075,235729595,235730846,235731031,235733502,235733829,235734482,235741421,235743978,235746335,235751209,235752004,235753043,235755477,235757291,235758971,235762719,235766078,235770159,235773841,235774912,235777062,235780864,235781926,235787199,235788700,235791698,235793502,235800319,235800870,235802907,235804503,235805742,235808454,235812970,235830225,235833577,235866842	235709308,235712197,235715357,235716778,235720905,235724180,235728131,235729657,235730943,235731177,235733691,235733906,235734659,235741628,235744157,235746527,235751362,235752171,235753274,235755647,235757458,235759599,235762851,235766277,235770297,235773991,235775086,235777308,235781055,235782087,235787373,235788845,235792125,235793612,235800386,235801097,235803064,235804665,235806772,235810534,235813061,235830424,235833667,235866876	0.944444
spleen_female_adult_51_years	chr8	38825346	38825361	38825356	+	RAMPAGE_only	4	4	17	1.252726	3.077820	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.764706
spleen_female_adult_51_years	chr2	174493815	174493819	174493815	-	RAMPAGE_only	3	3	7	0.515828	2.584963	chr2	174493788	174493893	LINE|L2|L2a	+	chr2	174434151	174487094	GPR155|ENST00000392551.6	-	174434151,174439897,174442118,174445080,174446610,174453736,174459877,174461401,174461587,174465784,174466543,174468911,174470389,174472964,174481496,174482872,174486872	174436416,174440035,174442183,174445176,174446747,174453841,174460088,174461492,174461672,174465902,174466627,174469067,174470555,174473364,174481987,174482918,174487094	0.571429
spleen_female_adult_51_years	chr14	23699470	23699476	23699470	+	High_confidence	469	518	827	60.941420	7.400364	chr14	23699385	23700234	LTR|ERV1|LTR1D1	-	chr14	23699465	23706566	STRG.103472.1	+	23699465,23701550,23701851,23703659,23706139	23699531,23701714,23701929,23705807,23706566	0.946796
spleen_female_adult_51_years	chr17	59209392	59209406	59209405	+	High_confidence	3	3	7	0.515828	2.584963	chr17	59209373	59209528	SINE|Alu|AluSx3	-	chr17	59209399	59215239	SMG8|ENST00000543872.6	+	59209399,59209899,59212340,59212728,59214804	59209511,59211810,59212486,59213601,59215239	0.714286
spleen_female_adult_51_years	chrX	16712889	16712933	16712889	-	High_confidence	5	5	41	3.021280	4.603056	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.829268
spleen_female_adult_51_years	chr17	77127872	77127873	77127872	+	High_confidence	12	12	16	1.179036	3.625000	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.625000
spleen_female_adult_51_years	chr1	204870075	204870114	204870094	+	High_confidence	7	7	21	1.547485	3.921928	chr1	204870144	204870213	LINE|CR1|Plat_L3	+	chr1	204870830	205018371	NFASC|ENST00000404076.5	+	204870830,204920631,204944225,204952010,204954187,204954828,204957655,204968248,204968797,204970615,204973275,204974178,204974656,204975270,204976670,204978967,204979361,204980369,204981797,204984026,204985909,204987417,204988632,204991291,205009556,205012796,205016307	204871053,204920740,204944406,204952116,204954384,204954951,204957826,204968360,204968982,204970747,204973419,204974290,204974823,204975418,204976795,204979069,204979559,204980440,204982020,204984142,204986114,204987540,204988806,204991306,205009688,205012866,205018371	0.714286
spleen_female_adult_51_years	chr2	96256922	96256923	96256922	-	RAMPAGE_only	43	43	46	3.389728	4.693479	chr2	96256725	96256974	LINE|L1|HAL1	+	chr2	96253799	96260595	TMEM127|ENST00000435268.1	-	96253799,96254832,96260494	96254115,96254997,96260595	0.782609
spleen_female_adult_51_years	chr19	46350849	46350870	46350849	+	RAMPAGE_only	177	207	329	24.243927	5.534895	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.936170
spleen_female_adult_51_years	chr12	127060613	127060614	127060613	+	High_confidence	18	23	24	1.768554	4.055958	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060465	127061334	STRG.99528.1	+	127060465	127061334	0.916667
spleen_female_adult_51_years	chr5	39217699	39217700	39217699	-	RAMPAGE_only	7	7	10	0.736897	2.725481	chr5	39217514	39217714	SINE|MIR|MIR	-	chr5	39202893	39219563	FYB1|ENST00000509072.5	-	39202893,39211057,39212677,39219442	39202987,39211091,39213017,39219563	0.500000
spleen_female_adult_51_years	chr4	39627120	39627121	39627120	-	High_confidence	954	981	1040	76.637336	5.665671	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.932692
spleen_female_adult_51_years	chr1	78620057	78620058	78620057	+	High_confidence	16	21	21	1.547485	3.439936	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.761905
spleen_female_adult_51_years	chr12	9144970	9145003	9145002	+	RAMPAGE_only	3	3	12	0.884277	2.663533	chr12	9144991	9147677	LINE|L1|L1MB1	-	chr12	9139069	9150807	STRG.91954.1	+	9139069	9150807	0.500000
spleen_female_adult_51_years	chr3	129230531	129230543	129230542	+	RAMPAGE_only	10	10	17	1.252726	3.327820	chr3	129230456	129231665	DNA|TcMar-Tigger|Tigger3b	-	chr3	129233006	129233931	STRG.31544.2	+	129233006	129233931	0.529412
spleen_female_adult_51_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	26	26	26	1.915933	3.950064	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.807692
spleen_female_adult_51_years	chr19	9700673	9700674	9700673	-	High_confidence	57	57	60	4.421385	3.695810	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.850000
spleen_female_adult_51_years	chr7	140641459	140641460	140641459	-	High_confidence	6	6	6	0.442138	2.584963	chr7	140641382	140641679	LINE|L2|L2b	-	chr7	140601924	140641485	DENND2A|ENST00000491728.5	-	140601924,140605704,140641405	140602542,140605806,140641485	0.833333
spleen_female_adult_51_years	chr2	24887184	24887185	24887184	-	RAMPAGE_only	50	50	64	4.716144	4.668122	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24841324	24878027	ADCY3|ENST00000433852.1	-	24841324,24841555,24842253,24872569,24877921	24841386,24841667,24842384,24872719,24878027	0.703125
spleen_female_adult_51_years	chr2	195659737	195659738	195659737	+	RAMPAGE_only	13	13	14	1.031656	3.180833	chr2	195659592	195659755	SINE|MIR|MIRb	+	chr2	195657448	195680433	SLC39A10|ENST00000418005.1	+	195657448,195680031	195657609,195680433	0.642857
spleen_female_adult_51_years	chr6	36540276	36540277	36540276	-	RAMPAGE_only	9	10	14	1.031656	2.623517	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36545278	STRG.50962.3	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36521733,36524340,36525590,36540071	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36517840,36521817,36524463,36525642,36545278	0.928571
spleen_female_adult_51_years	chr11	60182620	60182623	60182620	-	High_confidence	4	5	10	0.736897	2.947703	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.800000
spleen_female_adult_51_years	chr10	102449836	102449840	102449836	+	High_confidence	5	5	10	0.736897	3.121928	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	1.000000
spleen_female_adult_51_years	chr7	121138516	121138517	121138516	-	High_confidence	49	50	60	4.421385	4.294459	chr7	121138301	121138528	SINE|5S-Deu-L2|AmnSINE1	+	chr7	121137302	121138490	STRG.64650.1	-	121137302	121138490	0.916667
spleen_female_adult_51_years	chr14	35294421	35294473	35294442	+	RAMPAGE_only	2	2	11	0.810587	3.277613	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	0.909091
spleen_female_adult_51_years	chrX	5726324	5726325	5726324	-	High_confidence	102	105	131	9.653357	5.013285	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.923664
spleen_female_adult_51_years	chr16	11670585	11670589	11670585	+	RAMPAGE_only	5	5	11	0.810587	2.921928	chr16	11670570	11670680	SINE|MIR|MIRc	-	chr16	11668432	11679159	SNN|NM_003498.5	+	11668432,11675974	11668540,11679159	0.909091
spleen_female_adult_51_years	chr4	83285133	83285134	83285133	-	High_confidence	15	15	15	1.105346	3.773557	chr4	83285089	83285530	LTR|ERV1|LTR54	-	chr4	83263823	83284914	COQ2|NM_015697.7	-	83263823,83267585,83269859,83272086,83273495,83278947,83284511	83264363,83267774,83269993,83272172,83273617,83279114,83284914	0.600000
spleen_female_adult_51_years	chr2	230925231	230925265	230925231	-	High_confidence	4	4	26	1.915933	3.970176	chr2	230925193	230925329	SINE|MIR|MIR3	+	chr2	230907317	230925226	GPR55|ENST00000444078.5	-	230907317,230909621,230925167	230908310,230911096,230925226	0.500000
spleen_female_adult_51_years	chr2	36513684	36513736	36513735	+	High_confidence	4	5	13	0.957967	3.251629	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.538462
spleen_female_adult_51_years	chr16	81664342	81664344	81664342	+	RAMPAGE_only	7	14	20	1.473795	2.794789	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.900000
spleen_female_adult_51_years	chr3	24137838	24137853	24137852	+	High_confidence	7	7	16	1.179036	3.373557	chr3	24137269	24137970	LINE|L2|L2a	-	chr3	24137889	24189802	STRG.26046.1	+	24137889,24173783,24177949,24189574	24137948,24173904,24178012,24189802	0.750000
spleen_female_adult_51_years	chrX	73837439	73837497	73837450	-	RAMPAGE_only	19	20	54	3.979246	3.168400	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.981481
spleen_female_adult_51_years	chr19	45524130	45524131	45524130	+	RAMPAGE_only	9	9	12	0.884277	3.251629	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.750000
spleen_female_adult_51_years	chr1	202551736	202551791	202551736	+	RAMPAGE_only	59	66	346	25.496652	6.738220	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.546243
spleen_female_adult_51_years	chr3	28291770	28291795	28291770	+	High_confidence	3	5	19	1.400105	3.721612	chr3	28291648	28291798	LINE|L1|L1M7	-	chr3	28291800	28319741	STRG.26130.2	+	28291800,28294433,28298218,28316332,28319508	28292964,28294529,28298350,28316423,28319741	0.842105
spleen_female_adult_51_years	chr13	30377165	30377198	30377197	-	High_confidence	7	7	14	1.031656	3.546594	chr13	30377180	30377360	DNA|hAT-Charlie|MER5A	+	chr13	30357741	30377145	LINC00426|ENST00000420219.5	-	30357741,30358253,30363160,30372284,30375466,30376826	30357889,30358376,30363226,30372374,30375776,30377145	0.857143
spleen_female_adult_51_years	chr16	11587465	11587475	11587465	-	High_confidence	16	16	49	3.610798	4.369940	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
spleen_female_adult_51_years	chr3	69237176	69237186	69237182	-	RAMPAGE_only	5	5	22	1.621174	3.584184	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69216262	69246002	STRG.28943.12	-	69216262,69218321,69221857,69224606,69242727	69216349,69218379,69221923,69224690,69246002	0.500000
spleen_female_adult_51_years	chr20	3795750	3795789	3795750	+	High_confidence	43	45	224	16.506503	6.383785	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.973214
spleen_female_adult_51_years	chr3	29280832	29280877	29280876	-	High_confidence	7	7	21	1.547485	3.616349	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.571429
spleen_female_adult_51_years	chr7	2242922	2242923	2242922	+	High_confidence	14	14	14	1.031656	3.467720	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
spleen_female_adult_51_years	chr15	85330237	85330261	85330237	-	RAMPAGE_only	8	8	19	1.400105	3.471354	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.736842
spleen_female_adult_51_years	chr2	20593303	20593307	20593306	-	High_confidence	10	10	19	1.400105	3.787144	chr2	20592962	20593463	LINE|L2|L2a	+	chr2	20592869	20593295	STRG.13802.2	-	20592869	20593295	0.894737
spleen_female_adult_51_years	chr18	7946878	7946898	7946878	+	High_confidence	62	63	162	11.937739	5.578659	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.839506
spleen_female_adult_51_years	chr8	87044429	87044472	87044471	+	High_confidence	25	27	79	5.821490	5.449554	chr8	87044391	87044993	LTR|ERV1|MER61F	-	chr8	87044491	87284722	CNBD1|ENST00000522427.1	+	87044491,87205992,87236918,87284677	87044665,87206138,87237112,87284722	0.531646
spleen_female_adult_51_years	chr19	48753676	48753677	48753676	-	High_confidence	14	15	15	1.105346	3.378783	chr19	48753519	48753902	LTR|ERVK|LTR13A	-	chr19	48748010	48753660	FUT1|ENST00000645652.1	-	48748010,48752489,48752891,48753324,48753647	48751283,48752725,48753122,48753563,48753660	0.933333
spleen_female_adult_51_years	chr11	119110890	119110922	119110890	+	High_confidence	9	9	23	1.694864	3.265583	chr11	119110843	119110902	LINE|CR1|L3b	+	chr11	119111056	119117121	C2CD2L|ENST00000528586.2	+	119111056,119111262,119111520,119112327,119112481,119112699,119113610,119113854,119114079,119116024	119111168,119111374,119111629,119112392,119112609,119112874,119113712,119113988,119114365,119117121	0.826087
spleen_female_adult_51_years	chr12	7137085	7137098	7137097	+	RAMPAGE_only	3	3	7	0.515828	2.521641	chr12	7137127	7137213	SINE|MIR|MIR1_Amn	+	chr12	7138681	7143198	CLSTN3|ENST00000544584.1	+	7138681,7141241,7142085,7142868,7143162	7138816,7141404,7142139,7143026,7143198	1.000000
spleen_female_adult_51_years	chr5	997305	997319	997305	-	High_confidence	5	5	21	1.547485	3.787144	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.904762
spleen_female_adult_51_years	chr2	196176330	196176332	196176331	-	High_confidence	150	240	309	22.770132	6.496116	chr2	196176299	196176378	LINE|RTE-BovB|MamRTE1	-	chr2	196156571	196176327	STK17B|ENST00000420683.1	-	196156571,196163261,196174248,196176225	196156651,196163427,196174407,196176327	0.763754
spleen_female_adult_51_years	chr7	150568877	150568884	150568880	+	RAMPAGE_only	3	3	12	0.884277	3.584963	chr7	150568656	150569739	LINE|L2|L2b	-	chr7	150567389	150572938	GIMAP4|ENST00000494750.1	+	150567389,150572128	150567437,150572938	0.500000
spleen_female_adult_51_years	chr3	134485440	134485490	134485440	-	High_confidence	3	3	22	1.621174	3.975418	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.590909
spleen_female_adult_51_years	chr9	31335052	31335065	31335064	-	High_confidence	7	7	12	0.884277	3.084963	chr9	31334699	31335791	LTR|ERV1|MER52A	-	chr9	31118041	31335110	STRG.74134.1	-	31118041,31125437,31128468,31233746,31234444,31235293,31334656	31120012,31125583,31128558,31233840,31234553,31235419,31335110	1.000000
spleen_female_adult_51_years	chr19	49880212	49880213	49880212	+	RAMPAGE_only	5	5	8	0.589518	2.500000	chr19	49880157	49880245	SINE|MIR|MIR1_Amn	+	chr19	49878549	49888748	TBC1D17|ENST00000596243.5	+	49878549,49880278,49881267,49882040,49882241,49882763,49882972,49883650,49884252,49884458,49884658,49887475,49887717,49888230,49888423	49879504,49880402,49881475,49882152,49882400,49882892,49883076,49883745,49884369,49884559,49884758,49887573,49887834,49888317,49888748	0.875000
spleen_female_adult_51_years	chr5	160204808	160204826	160204808	-	High_confidence	6	6	18	1.326415	3.836592	chr5	160204479	160204790	SINE|Alu|AluSq2	-	chr5	160196590	160204826	AC008609.1|ENST00000501818.1	-	160196590,160204721	160199171,160204826	0.500000
spleen_female_adult_51_years	chr4	55948010	55948022	55948010	-	High_confidence	4	8	14	1.031656	3.334679	chr4	55947862	55947994	LTR|ERV1|MER51D	-	chr4	55890377	55948004	STRG.36820.1	-	55890377,55938856,55940516,55947839	55890526,55938955,55940632,55948004	0.500000
spleen_female_adult_51_years	chr12	126772336	126772360	126772336	-	High_confidence	35	35	57	4.200316	4.360577	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126748055	126772356	LINC00944|ENST00000542248.5	-	126748055,126760931,126763414,126772078	126748127,126761045,126763498,126772356	0.859649
spleen_female_adult_51_years	chr7	43762655	43762670	43762659	+	RAMPAGE_only	73	74	292	21.517406	5.970213	chr7	43762606	43762916	SINE|Alu|AluSc	-	chr7	43758686	43807342	BLVRA|ENST00000402924.5	+	43758686,43760016,43771137,43787903,43791248,43792714,43800464,43803675,43806976	43758734,43760110,43771170,43788025,43791368,43792812,43800572,43803847,43807342	0.962329
spleen_female_adult_51_years	chr13	48492783	48492791	48492783	-	High_confidence	3	3	6	0.442138	2.584963	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.833333
spleen_female_adult_51_years	chr22	30973598	30973599	30973598	+	RAMPAGE_only	4	4	7	0.515828	2.521641	chr22	30973598	30973802	SINE|MIR|MIRc	-	chr22	30972262	30976063	TUG1|ENST00000602393.1	+	30972262,30975169	30973601,30976063	0.571429
spleen_female_adult_51_years	chr9	137738712	137738723	137738712	+	High_confidence	4	4	11	0.810587	3.277613	chr9	137738221	137739080	LINE|L1|L1MB3	+	chr9	137738606	137754221	EHMT1|ENST00000495657.5	+	137738606,137743370,137743901,137752330,137754170	137738779,137743528,137744090,137752408,137754221	0.818182
spleen_female_adult_51_years	chr2	113625663	113625681	113625672	-	RAMPAGE_only	6	7	25	1.842244	3.973661	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	1.000000
spleen_female_adult_51_years	chr15	77285030	77285037	77285030	-	RAMPAGE_only	2	3	7	0.515828	2.521641	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.714286
spleen_female_adult_51_years	chr20	37694928	37694934	37694933	+	High_confidence	5	5	11	0.810587	2.846439	chr20	37694952	37695205	DNA|hAT-Charlie|MER33	+	chr20	37694061	37872117	CTNNBL1|ENST00000628103.2	+	37694061,37727301,37732878,37737377,37746467,37757558,37765196,37767952,37777344,37777653,37779186,37802866,37840101,37842338,37859898,37860271,37871924	37694152,37727402,37733067,37737484,37746607,37757656,37765290,37768044,37777417,37777712,37779335,37803048,37840199,37842419,37860036,37860344,37872117	0.909091
spleen_female_adult_51_years	chr5	18746155	18746202	18746155	-	High_confidence	26	26	73	5.379351	5.322918	chr5	18746065	18746356	LTR|ERV1|LTR12F	-	chr5	18742382	18746178	STRG.41703.1	-	18742382	18746178	0.931507
spleen_female_adult_51_years	chr12	1080685	1080696	1080685	+	RAMPAGE_only	5	5	13	0.957967	3.418296	chr12	1080490	1080912	LTR|ERVL-MaLR|THE1A	+	chr12	1083140	1444589	ERC1|ENST00000538971.6	+	1083140,1104749,1110191,1115865,1141619,1180539,1181924,1183280,1189858,1204500,1236768,1289851,1371832,1408148,1410388,1444561	1083580,1104824,1110347,1116033,1141787,1180677,1182065,1183421,1190052,1204512,1236904,1290012,1371977,1408247,1410453,1444589	0.923077
spleen_female_adult_51_years	chr7	87040212	87040223	87040222	-	High_confidence	25	25	53	3.905557	4.890576	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	87039750	87040586	STRG.62496.1	-	87039750	87040586	0.679245
spleen_female_adult_51_years	chr8	116648807	116648848	116648807	-	RAMPAGE_only	2	2	10	0.736897	2.646439	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
spleen_female_adult_51_years	chr12	27579351	27579369	27579351	+	RAMPAGE_only	5	5	9	0.663208	3.169925	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.666667
spleen_female_adult_51_years	chr10	46269605	46269624	46269606	-	High_confidence	42	65	157	11.569290	5.940851	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.878981
spleen_female_adult_51_years	chr11	56996465	56996466	56996465	-	RAMPAGE_only	6	6	9	0.663208	2.725481	chr11	56995893	57000000	LTR|ERV1|MER52-int	-	chr11	56964661	57092232	STRG.86838.8	-	56964661,57091973	57005902,57092232	0.888889
spleen_female_adult_51_years	chr16	2770059	2770077	2770076	+	High_confidence	4	6	11	0.810587	2.921928	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2771410	STRG.113414.14	+	2769894,2770603,2770857,2771120	2770465,2770717,2771049,2771410	0.818182
spleen_female_adult_51_years	chr2	217842161	217842201	217842161	-	High_confidence	14	14	56	4.126626	4.812273	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.892857
spleen_female_adult_51_years	chr19	54572987	54573020	54573001	+	High_confidence	13	13	42	3.094969	4.781707	chr19	54572997	54573273	SINE|Alu|AluJr	-	chr19	54572996	54587560	LILRA2|NM_006866.3	+	54572996,54573697,54574075,54574300,54574730,54575255,54575806,54587200	54573435,54573912,54574111,54574582,54575033,54575552,54576109,54587560	0.809524
spleen_female_adult_51_years	chr13	24272663	24272667	24272666	+	High_confidence	7	8	16	1.179036	3.456565	chr13	24272710	24272887	SINE|MIR|MIRb	+	chr13	24272688	24278769	SPATA13|ENST00000488060.1	+	24272688,24278613	24273137,24278769	0.812500
spleen_female_adult_51_years	chr7	102973265	102973266	102973265	-	High_confidence	28	28	32	2.358072	4.413716	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102883571	102973219	FBXL13|ENST00000477915.5	-	102883571,102884213,102913085,102926273,102963532,102968021,102973149	102883685,102884312,102913215,102926374,102963665,102968117,102973219	0.718750
spleen_female_adult_51_years	chr6	7154678	7154710	7154709	+	RAMPAGE_only	8	8	19	1.400105	3.471354	chr6	7154535	7154760	SINE|MIR|MIR	-	chr6	7139244	7230433	RREB1|ENST00000483150.1	+	7139244,7140647,7176654,7181123,7181869,7187433,7189158,7210803,7211572,7226466,7228996	7139298,7140808,7176773,7181246,7182082,7187523,7189322,7210948,7211709,7226656,7230433	0.789474
spleen_female_adult_51_years	chr19	9140393	9140428	9140427	+	High_confidence	35	35	135	9.948116	5.721718	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.800000
spleen_female_adult_51_years	chr6	118651542	118651605	118651592	-	High_confidence	53	54	262	19.306714	6.438305	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.958015
spleen_female_adult_51_years	chr12	119181285	119181289	119181285	+	RAMPAGE_only	8	8	19	1.400105	3.281373	chr12	119181138	119181588	LTR|ERV1|MER4A1	-	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.947368
spleen_female_adult_51_years	chr22	39066300	39066335	39066334	+	High_confidence	46	47	154	11.348221	6.165670	chr22	39066093	39066470	LTR|ERV1|LTR7	-	chr22	39066317	39066860	STRG.133551.1	+	39066317	39066860	0.519481
spleen_female_adult_51_years	chr1	156157857	156157863	156157857	+	RAMPAGE_only	4	4	8	0.589518	3.000000	chr1	156157787	156157882	SINE|MIR|MIR	-	chr1	156156424	156175232	SEMA4A|ENST00000487358.5	+	156156424,156158069,156158387,156158671,156160442,156160904,156161345,156162943,156172825,156174821,156175085	156156574,156158132,156158486,156158824,156160559,156161029,156161518,156163094,156173006,156174940,156175232	1.000000
spleen_female_adult_51_years	chr19	54617322	54617348	54617347	+	High_confidence	15	20	27	1.989623	3.979098	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.962963
spleen_female_adult_51_years	chr5	150640300	150640403	150640347	+	High_confidence	77	79	256	18.864575	6.491633	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640313	150659220	STRG.47750.3	+	150640313,150647943,150656403	150640425,150650303,150659220	0.992188
spleen_female_adult_51_years	chr2	6918647	6918680	6918679	-	High_confidence	22	23	46	3.389728	4.771598	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6912275	6918682	RNF144A-AS1|NR_033997.1	-	6912275,6914192,6915822,6916849,6918401	6913664,6914350,6915967,6917224,6918682	0.804348
spleen_female_adult_51_years	chr2	217277834	217277846	217277834	+	High_confidence	5	5	9	0.663208	2.725481	chr2	217277834	217277987	SINE|MIR|MIR3	-	chr2	217277911	217296034	STRG.23195.1	+	217277911,217282706,217295903	217278272,217282809,217296034	0.555556
spleen_female_adult_51_years	chr17	77127959	77127965	77127964	+	High_confidence	4	4	9	0.663208	2.947703	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.555556
spleen_female_adult_51_years	chr12	46367675	46367676	46367675	-	High_confidence	7	8	10	0.736897	2.641604	chr12	46367602	46367794	SINE|MIR|MIRc	+	chr12	46364441	46367410	SLC38A2|ENST00000548870.5	-	46364441,46364643,46365106,46366863,46367075,46367266	46364556,46364702,46365189,46366945,46367168,46367410	0.600000
spleen_female_adult_51_years	chr13	48492841	48492857	48492841	-	High_confidence	3	3	9	0.663208	2.503258	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.666667
spleen_female_adult_51_years	chr1	65550466	65550494	65550475	+	RAMPAGE_only	5	5	21	1.547485	3.384184	chr1	65544806	65550970	LINE|L1|L1PA3	-	chr1	65565545	65626234	LEPR|ENST00000371058.1	+	65565545,65570472,65572325,65592656,65596447,65598659,65601391,65601842,65605037,65608752,65609946,65610213,65616007,65617963,65619927,65621352,65622905,65626122	65565605,65570802,65572449,65592865,65596593,65598804,65601682,65601960,65605237,65608901,65610106,65610296,65616224,65618146,65620023,65621458,65622981,65626234	0.714286
spleen_female_adult_51_years	chr1	52632820	52632841	52632840	+	High_confidence	5	5	16	1.179036	3.500000	chr1	52632755	52632933	SINE|MIR|MIRb	+	chr1	52633343	52669120	FAM159A|NR_135157.1	+	52633343,52642862,52659400,52667398,52668486	52633675,52643002,52659580,52667579,52669120	0.562500
spleen_female_adult_51_years	chr19	3062922	3062983	3062922	-	High_confidence	15	17	65	4.789834	4.550094	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.984615
spleen_female_adult_51_years	chr11	123061128	123061257	123061256	-	High_confidence	67	69	222	16.359124	5.831151	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.954955
spleen_female_adult_51_years	chr9	39810023	39810099	39810033	-	High_confidence	33	33	91	6.705767	5.388581	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.736264
spleen_female_adult_51_years	chr14	81192654	81192719	81192681	-	RAMPAGE_only	5	5	34	2.505451	4.351410	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.941176
spleen_female_adult_51_years	chr1	1655448	1655478	1655461	-	RAMPAGE_only	2	2	8	0.589518	2.807355	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.500000
spleen_female_adult_51_years	chr3	50312875	50312934	50312933	-	High_confidence	30	31	104	7.663734	5.181077	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50302748	50312993	STRG.27392.7	-	50302748,50303465,50303787,50309658	50302980,50303563,50303953,50312993	0.990385
spleen_female_adult_51_years	chr11	108224068	108224093	108224074	+	High_confidence	48	48	85	6.263628	5.196936	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.835294
spleen_female_adult_51_years	chr18	50843101	50843104	50843101	-	RAMPAGE_only	7	7	15	1.105346	3.378783	chr18	50842925	50843332	LTR|ERVL|MLT2D	-	chr18	50798376	50825402	MRO|ENST00000428869.6	-	50798376,50800035,50801348,50805153,50806703,50809301,50816123,50819580,50825308	50799390,50800143,50801504,50805336,50806850,50809404,50816162,50819702,50825402	0.933333
spleen_female_adult_51_years	chr9	123179165	123179188	123179165	-	RAMPAGE_only	3	3	11	0.810587	2.913977	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	1.000000
spleen_female_adult_51_years	chr7	6590246	6590279	6590246	+	High_confidence	5	5	19	1.400105	3.794653	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.631579
spleen_female_adult_51_years	chr6	83087035	83087052	83087035	+	RAMPAGE_only	4	5	13	0.957967	3.238901	chr6	83086937	83087482	LINE|L2|L2a	-	chr6	83096728	83168331	DOP1A|ENST00000369739.7	+	83096728,83096924,83100704,83108909,83110124,83113322,83118887,83119774,83120682,83121929,83122862,83124704,83125165,83125499,83128886,83130122,83132175,83134186,83135618,83137172,83139999,83140220,83141920,83145523,83147235,83148758,83151592,83151882,83152287,83153510,83153893,83154179,83155950,83157181,83158566,83159795,83162789,83164659,83167861	83096823,83097115,83100886,83109080,83110314,83113421,83118987,83119857,83120791,83122050,83122982,83124819,83125195,83125733,83129508,83130397,83132328,83134287,83135878,83139162,83140111,83140403,83142046,83145658,83147291,83148863,83151659,83152027,83152367,83153620,83154043,83154241,83156103,83157318,83158622,83159960,83162919,83164719,83168331	0.923077
spleen_female_adult_51_years	chr12	91179523	91179552	91179523	-	High_confidence	5	6	20	1.473795	3.826875	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91146165	91179513	DCN|ENST00000546391.5	-	91146165,91151653,91153095,91178341,91179361	91146252,91151792,91153189,91178585,91179513	0.700000
spleen_female_adult_51_years	chr1	244325151	244325177	244325176	-	High_confidence	6	6	10	0.736897	2.646439	chr1	244325034	244325405	LTR|ERV1|MER57B1	-	chr1	244324587	244325134	STRG.12413.1	-	244324587	244325134	0.700000
spleen_female_adult_51_years	chr2	217277924	217277980	217277979	+	High_confidence	58	59	164	12.085118	5.512299	chr2	217277834	217277987	SINE|MIR|MIR3	-	chr2	217277911	217296034	STRG.23195.1	+	217277911,217282706,217295903	217278272,217282809,217296034	0.500000
spleen_female_adult_51_years	chr8	23243724	23243742	23243741	+	High_confidence	3	3	7	0.515828	2.521641	chr8	23243733	23246250	LINE|L1|L1MC	-	chr8	23243650	23260286	STRG.67306.7	+	23243650,23255246,23256459,23258032,23258329,23258731,23259065,23260143	23249381,23255432,23256593,23258081,23258449,23258830,23259126,23260286	1.000000
spleen_female_adult_51_years	chr3	135965670	135965749	135965748	+	High_confidence	6	6	42	3.094969	4.665734	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.976190
spleen_female_adult_51_years	chr8	24387314	24387340	24387336	-	High_confidence	35	35	88	6.484698	5.451608	chr8	24386908	24387825	LTR|ERVK|HERVK22-int	-	chr8	24295890	24387324	AC120193.1|ENST00000523700.5	-	24295890,24300884,24387160	24296250,24300929,24387324	0.500000
spleen_female_adult_51_years	chr22	43232372	43232395	43232372	+	High_confidence	4	6	13	0.957967	3.026987	chr22	43232272	43232431	SINE|MIR|MIR	+	chr22	43232140	43239010	Z82214.1|ENST00000419643.1	+	43232140,43233427,43238597	43232518,43233624,43239010	0.538462
spleen_female_adult_51_years	chr1	150457305	150457343	150457305	+	RAMPAGE_only	3	3	16	1.179036	3.375000	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150364710	150473556	RPRD2|ENST00000369068.4	+	150364710,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150364919,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	0.937500
spleen_female_adult_51_years	chr21	29077476	29077507	29077486	+	High_confidence	32	34	99	7.295285	5.580121	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.626263
spleen_female_adult_51_years	chr5	170267210	170267290	170267259	-	High_confidence	11	11	65	4.789834	4.692856	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.969231
spleen_female_adult_51_years	chr2	134975814	134975851	134975814	+	High_confidence	8	8	15	1.105346	3.324863	chr2	134974300	134976630	LINE|L1|L1MA4A	-	chr2	134975966	134976334	STRG.18932.1	+	134975966	134976334	0.533333
spleen_female_adult_51_years	chr6	31587007	31587021	31587009	+	High_confidence	43	88	175	12.895706	6.000609	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.885714
spleen_female_adult_51_years	chr14	95664812	95664817	95664812	+	High_confidence	3	3	9	0.663208	2.947703	chr14	95664736	95664975	LTR|ERVL-MaLR|MLT1H	-	chr14	95664861	95670414	TCL6|ENST00000486671.1	+	95664861,95668125	95665076,95670414	0.666667
spleen_female_adult_51_years	chr12	91179462	91179463	91179462	-	High_confidence	9	9	14	1.031656	3.521641	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.500000
spleen_female_adult_51_years	chr11	72135675	72135730	72135724	+	High_confidence	22	29	108	7.958493	5.447741	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	0.842593
spleen_female_adult_51_years	chr12	9065162	9065181	9065173	+	High_confidence	12	12	28	2.063313	4.209867	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.607143
spleen_female_adult_51_years	chr12	26832747	26832780	26832779	-	High_confidence	4	4	17	1.252726	3.875000	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.823529
spleen_female_adult_51_years	chr8	18063191	18063207	18063191	-	High_confidence	2	2	10	0.736897	2.947703	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.900000
spleen_female_adult_51_years	chr22	23705513	23705537	23705513	-	RAMPAGE_only	3	5	9	0.663208	2.503258	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	1.000000
spleen_female_adult_51_years	chr6	137218788	137218822	137218821	-	High_confidence	4	4	9	0.663208	2.750000	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.666667
spleen_female_adult_51_years	chr19	54617130	54617152	54617147	+	High_confidence	31	33	133	9.800736	6.257245	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.751880
spleen_female_adult_51_years	chrX	5726096	5726132	5726116	-	High_confidence	13	15	48	3.537108	4.450880	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719307	5726213	STRG.134367.1	-	5719307,5725929	5719872,5726213	0.812500
spleen_female_adult_51_years	chr1	176162889	176162938	176162936	-	RAMPAGE_only	5	7	18	1.326415	3.410417	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944852	176184664	STRG.9150.5	-	175944852,175947194,175986942,175988287,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176136487,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176136547,176149074,176162988,176163891,176176007,176184664	0.944444
spleen_female_adult_51_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	22	22	22	1.621174	3.390805	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
spleen_female_adult_51_years	chr12	8788252	8788253	8788252	+	High_confidence	11	11	14	1.031656	3.521641	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.857143
spleen_female_adult_51_years	chr8	6952982	6952985	6952984	-	RAMPAGE_only	6	11	13	0.957967	3.546594	chr8	6952819	6952939	LTR|ERVL|MER54B	-	chr8	6950725	6951599	DEFA8P|ENST00000457582.1	-	6950725,6951427	6950838,6951599	0.769231
spleen_female_adult_51_years	chr12	10553364	10553365	10553364	+	High_confidence	43	44	46	3.389728	4.786503	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.521739
spleen_female_adult_51_years	chr20	23386663	23386699	23386663	-	RAMPAGE_only	5	5	15	1.105346	3.506891	chr20	23386573	23386920	LTR|ERVL|MER77	+	chr20	23374521	23421414	STRG.128504.2	-	23374521,23379444,23379866,23381212,23389945,23390208,23394921,23395138,23397071,23402992,23421304	23377486,23379495,23379935,23381317,23390030,23390264,23394999,23395262,23397188,23403072,23421414	0.866667
spleen_female_adult_51_years	chr4	16845676	16845677	16845676	-	RAMPAGE_only	7	7	10	0.736897	2.646439	chr4	16845657	16845827	SINE|MIR|MIRb	-	chr4	16812631	16854641	STRG.35862.17	-	16812631,16849226	16849072,16854641	1.000000
spleen_female_adult_51_years	chr7	137254968	137254969	137254968	-	RAMPAGE_only	6	7	9	0.663208	2.725481	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	1.000000
spleen_female_adult_51_years	chr17	64378871	64378881	64378873	-	High_confidence	23	31	47	3.463418	5.078639	chr17	64378696	64378922	SINE|MIR|MIRb	+	chr17	64377573	64378874	PECAM1|ENST00000569530.1	-	64377573,64378797	64378117,64378874	0.574468
spleen_female_adult_51_years	chrX	153028792	153028793	153028792	+	High_confidence	5	5	8	0.589518	2.750000	chrX	153028782	153029091	LTR|Gypsy|MamGyp-int	+	chrX	153028784	153030148	AC243591.1|ENST00000452967.2	+	153028784	153030148	0.875000
spleen_female_adult_51_years	chr12	126772241	126772256	126772250	-	High_confidence	10	11	33	2.431762	4.218139	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126730700	126772262	LINC00944|NR_033878.1	-	126730700,126732342,126746260,126747930,126772078	126730803,126732407,126746332,126748127,126772262	0.666667
spleen_female_adult_51_years	chr7	104940943	104940944	104940943	+	High_confidence	528	531	541	39.866153	5.129222	chr7	104939974	104941430	LTR|ERV1|LTR12C	+	chr7	104941062	104962060	AC007384.1|ENST00000415513.1	+	104941062,104961983	104941670,104962060	0.974122
spleen_female_adult_51_years	chr2	55618850	55618904	55618850	-	High_confidence	11	11	29	2.137003	4.593069	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.965517
spleen_female_adult_51_years	chr6	128241286	128241324	128241286	-	High_confidence	17	17	113	8.326941	5.221293	chr6	128241276	128241454	DNA|hAT-Charlie|MER5A	+	chr6	128184431	128241299	PTPRK|ENST00000368205.7	-	128184431,128218921,128240034,128241222	128184725,128219096,128240150,128241299	0.761062
spleen_female_adult_51_years	chr12	70468078	70468092	70468091	+	High_confidence	7	7	20	1.473795	3.511085	chr12	70467961	70468294	LTR|ERV1|MER61A	+	chr12	70468084	70543040	AC025569.1|ENST00000548687.5	+	70468084,70510211,70510407,70513184,70520198,70520785,70522523,70527674,70538049	70468327,70510284,70510577,70513227,70520267,70520928,70522630,70527738,70543040	0.750000
spleen_female_adult_51_years	chr14	73463610	73463625	73463624	-	High_confidence	69	69	120	8.842770	6.097650	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73409975	73463642	AC005280.3|ENST00000553415.5	-	73409975,73459033,73462528,73463474	73410068,73459305,73462689,73463642	0.516667
spleen_female_adult_51_years	chr14	77736978	77736979	77736978	-	High_confidence	5	5	7	0.515828	2.807355	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.857143
spleen_female_adult_51_years	chr6	79631273	79631329	79631328	+	High_confidence	44	45	159	11.716670	6.180123	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.993711
spleen_female_adult_51_years	chr9	20658599	20658608	20658607	+	High_confidence	6	9	19	1.400105	3.127987	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.684211
spleen_female_adult_51_years	chr17	59892716	59892753	59892716	-	High_confidence	7	7	35	2.579141	4.650572	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.857143
spleen_female_adult_51_years	chr15	57300338	57300344	57300343	+	High_confidence	32	32	80	5.895180	5.049547	chr15	57300291	57300572	SINE|Alu|AluSg	-	chr15	57300364	57307761	LINC00926|ENST00000501726.1	+	57300364,57305318,57307541	57300924,57307068,57307761	0.962500
spleen_female_adult_51_years	chr9	396909	396927	396926	+	RAMPAGE_only	4	6	10	0.736897	2.947703	chr9	396939	397007	LINE|L1|L1ME4a	+	chr9	366250	465255	DOCK8|ENST00000382329.1	+	366250,368017,370229,371427,372184,376209,376976,379770,382512,386330,390470,396784,399145,404917,406929,414781,418067,420400,420948,422047,426884,428361,429701,432165,433874,434782,439244,441285,441874,443426,446369,449783,452010,463516,464158	366552,368300,370300,371566,372286,376305,377211,379935,382685,386426,390566,396934,399259,405073,407069,414951,418207,420583,421078,422135,426981,428496,429854,432324,433975,434975,439388,441417,442009,443516,446606,449927,452117,463687,465255	0.900000
spleen_female_adult_51_years	chr8	24387453	24387488	24387453	-	High_confidence	3	3	8	0.589518	2.750000	chr8	24386908	24387825	LTR|ERVK|HERVK22-int	-	chr8	24295813	24387515	AC120193.1|ENST00000518988.5	-	24295813,24296153,24300884,24387160	24296057,24296250,24300929,24387515	0.500000
spleen_female_adult_51_years	chr10	32446977	32446988	32446977	+	High_confidence	3	3	8	0.589518	2.807355	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.875000
spleen_female_adult_51_years	chr1	54172716	54172734	54172716	-	RAMPAGE_only	2	2	9	0.663208	2.725481	chr1	54172537	54172738	LINE|L2|L2b	+	chr1	54138994	54153770	CDCP2|ENST00000371330.1	-	54138994,54141097,54144465,54152843	54140106,54141433,54144813,54153770	0.888889
spleen_female_adult_51_years	chr22	18149845	18149874	18149845	+	High_confidence	4	5	15	1.105346	3.039149	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.866667
spleen_female_adult_51_years	chr11	64226142	64226180	64226158	-	High_confidence	59	62	295	21.738475	6.750635	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.969492
spleen_female_adult_51_years	chr14	81427108	81427197	81427147	-	High_confidence	6	8	35	2.579141	3.947613	chr14	81426946	81427161	SINE|MIR|MIR	-	chr14	81260649	81427212	STON2|NM_033104.3	-	81260649,81276900,81370987,81395893,81398294,81427101	81270872,81278739,81371185,81396178,81398580,81427212	0.971429
spleen_female_adult_51_years	chr22	41940217	41940222	41940217	-	High_confidence	4	4	11	0.810587	2.921928	chr22	41939903	41940386	LINE|L2|L2a	+	chr22	41938720	41940219	CENPM|NM_001110215.2	-	41938720,41940138	41939196,41940219	0.545455
spleen_female_adult_51_years	chr8	134572668	134572673	134572672	-	RAMPAGE_only	4	6	10	0.736897	2.921928	chr8	134572592	134572743	DNA|TcMar-Mariner|MARNA	-	chr8	134478024	134565671	ZFAT|ENST00000518408.5	-	134478024,134509618,134512474,134520882,134532833,134565332	134478721,134509749,134512601,134521001,134532972,134565671	0.900000
spleen_female_adult_51_years	chr14	85934606	85934608	85934606	+	High_confidence	4	7	11	0.810587	2.663533	chr14	85934517	85934812	LTR|ERV1|LTR12F	+	chr14	85934637	85935832	STRG.106900.1	+	85934637	85935832	0.818182
spleen_female_adult_51_years	chr19	5680248	5680249	5680248	-	High_confidence	5	5	7	0.515828	2.521641	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
spleen_female_adult_51_years	chr5	126814141	126814163	126814141	+	RAMPAGE_only	3	3	10	0.736897	3.169925	chr5	126813882	126814194	SINE|Alu|AluSp	-	chr5	126777152	126836571	LMNB1|ENST00000504788.5	+	126777152,126804775,126805570,126810179,126811772,126818921,126820909,126822780,126825987,126832693,126836222	126777244,126804932,126805696,126810350,126811898,126819142,126821135,126822885,126826107,126832801,126836571	0.800000
spleen_female_adult_51_years	chr11	58578102	58578133	58578132	-	High_confidence	27	38	129	9.505977	5.719121	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.798450
spleen_female_adult_51_years	chr1	153967486	153967512	153967486	+	High_confidence	8	8	21	1.547485	3.003113	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.904762
spleen_female_adult_51_years	chrX	150879893	150879903	150879902	-	RAMPAGE_only	6	7	14	1.031656	3.324863	chrX	150879626	150879948	SINE|Alu|AluJb	+	chrX	150814899	150898609	CD99L2|ENST00000491877.1	-	150814899,150816006,150816278,150831230,150898521	150814936,150816078,150816455,150831293,150898609	0.642857
spleen_female_adult_51_years	chr1	155637559	155637604	155637559	-	High_confidence	76	78	222	16.359124	5.911266	chr1	155637451	155637661	LTR|ERV1|LTR12F	-	chr1	155626848	155637584	STRG.7940.1	-	155626848,155637393	155634846,155637584	0.927928
spleen_female_adult_51_years	chr3	50312365	50312401	50312381	-	High_confidence	4	6	23	1.694864	4.070656	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50299888	50312381	HYAL1|NM_153281.1	-	50299888,50300987,50302056,50303787,50309658,50312263	50300800,50301077,50302980,50303953,50309777,50312381	0.782609
spleen_female_adult_51_years	chr19	49086520	49086547	49086520	+	High_confidence	17	18	38	2.800210	4.293594	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.921053
spleen_female_adult_51_years	chr2	46256725	46256782	46256725	-	High_confidence	18	22	118	8.695390	5.836880	chr2	46256334	46256785	LINE|L2|L2a	+	chr2	46225409	46256732	STRG.15201.1	-	46225409,46255206,46256636	46225578,46255502,46256732	0.728814
spleen_female_adult_51_years	chr17	42136477	42136479	42136478	-	High_confidence	5	9	9	0.663208	2.750000	chr17	42136440	42136680	SINE|MIR|MIRb	+	chr17	42128329	42136431	RAB5C|ENST00000552162.5	-	42128329,42128648,42130336,42136340	42128383,42128800,42130590,42136431	0.555556
spleen_female_adult_51_years	chr13	27212699	27212700	27212699	+	High_confidence	47	47	61	4.495075	4.463501	chr13	27211990	27213118	LTR|ERV1|LTR12D	+	chr13	27212790	27219517	STRG.100027.1	+	27212790,27219346	27213203,27219517	0.983607
spleen_female_adult_51_years	chr12	110688630	110688658	110688657	-	High_confidence	6	6	14	1.031656	3.521641	chr12	110688571	110688794	SINE|MIR|MIRc	+	chr12	110648796	110688709	HVCN1|ENST00000356742.9	-	110648796,110650167,110651216,110655233,110661163,110683224,110687974	110649475,110650280,110651448,110655338,110661448,110683264,110688709	0.928571
spleen_female_adult_51_years	chr6	7154605	7154652	7154645	+	RAMPAGE_only	5	5	13	0.957967	3.392747	chr6	7154535	7154760	SINE|MIR|MIR	-	chr6	7108631	7219091	RREB1|ENST00000475946.5	+	7108631,7176654,7181123,7187433,7189158,7210803,7211572	7108702,7176773,7182082,7187523,7189322,7210948,7219091	0.615385
spleen_female_adult_51_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	17	20	21	1.547485	4.021928	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.619048
spleen_female_adult_51_years	chr5	138369928	138369956	138369928	+	RAMPAGE_only	3	3	11	0.810587	3.095795	chr5	138369795	138370010	SINE|MIR|MIRc	-	chr5	138372673	138437028	KDM3B|ENST00000510866.5	+	138372673,138375092,138377719,138379583,138381515,138386021,138386288,138391012,138393170,138398177,138399859,138415131,138417482,138418952,138420705,138424074,138425410,138426974,138427188,138427966,138429825,138430248,138431424,138435619	138372841,138375206,138377825,138379708,138381590,138386190,138386621,138392261,138393372,138398392,138400012,138415239,138417610,138419232,138420962,138424341,138425582,138427065,138427319,138428086,138429965,138430425,138431559,138437028	1.000000
spleen_female_adult_51_years	chr11	100715407	100715410	100715407	+	RAMPAGE_only	27	27	40	2.947590	4.599379	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.575000
spleen_female_adult_51_years	chr5	133089620	133089678	133089677	+	RAMPAGE_only	19	20	50	3.684487	5.123856	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.980000
spleen_female_adult_51_years	chr13	29647246	29647293	29647272	+	High_confidence	10	10	43	3.168659	4.518833	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647382	29655626	STRG.100119.1	+	29647382,29655072	29647724,29655626	0.534884
spleen_female_adult_51_years	chr20	1467643	1467700	1467679	-	High_confidence	16	16	52	3.831867	4.671406	chr20	1467673	1468159	LTR|ERV1|LTR10B	+	chr20	1442161	1467692	NSFL1C|ENST00000216879.8	-	1442161,1445665,1452492,1453030,1454212,1454966,1458199,1464328,1466719	1443911,1445830,1452630,1453140,1454305,1455132,1458274,1464426,1467692	1.000000
spleen_female_adult_51_years	chr4	79492406	79492410	79492409	+	High_confidence	5	5	12	0.884277	2.913977	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492415	79576460	LINC00989|ENST00000508174.5	+	79492415,79493151,79513784,79575140	79492623,79493585,79513902,79576460	0.916667
spleen_female_adult_51_years	chr3	33838256	33838281	33838256	+	RAMPAGE_only	5	5	16	1.179036	3.750000	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.750000
spleen_female_adult_51_years	chr19	33395166	33395191	33395190	-	High_confidence	8	9	37	2.726521	4.593400	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	0.972973
spleen_female_adult_51_years	chr8	116652016	116652035	116652016	+	High_confidence	18	22	34	2.505451	4.173034	chr8	116651777	116652029	LINE|L2|L2	-	chr8	116652099	116654625	LOC105375713|NR_136278.1	+	116652099,116654158	116652456,116654625	0.764706
spleen_female_adult_51_years	chr3	134597811	134597824	134597823	+	High_confidence	4	4	10	0.736897	2.641604	chr3	134597473	134597869	LTR|ERVL|ERV3-16A3_LTR	+	chr3	134597823	134628104	EPHB1|ENST00000472904.5	+	134597823,134615183,134627939	134597984,134615438,134628104	0.700000
spleen_female_adult_51_years	chr8	94950163	94950164	94950163	-	High_confidence	10	10	15	1.105346	3.182006	chr8	94950149	94950305	SINE|MIR|MIRc	+	chr8	94925971	94949411	TP53INP1|ENST00000342697.4	-	94925971,94939859,94940829,94949153	94930728,94940220,94941091,94949411	0.600000
spleen_female_adult_51_years	chr12	110669173	110669204	110669203	-	RAMPAGE_only	5	9	28	2.063313	4.494680	chr12	110669108	110669244	LINE|L2|L2b	+	chr12	110648685	110683267	HVCN1|ENST00000620084.4	-	110648685,110650167,110651216,110655233,110661163,110683224	110649475,110650280,110651448,110655338,110661448,110683267	0.714286
spleen_female_adult_51_years	chr3	139344535	139344573	139344547	+	High_confidence	26	26	62	4.568764	4.877642	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.919355
spleen_female_adult_51_years	chr13	99496744	99496756	99496744	-	High_confidence	3	3	9	0.663208	2.947703	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.777778
spleen_female_adult_51_years	chrX	147937542	147937543	147937542	+	RAMPAGE_only	7	7	9	0.663208	2.641604	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.139482.9	+	147940580,147943130,147944868,147945533,147948733	147940662,147943326,147945051,147945616,147950315	0.888889
spleen_female_adult_51_years	chr10	4678130	4678177	4678146	-	High_confidence	19	19	56	4.126626	4.808852	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.535714
spleen_female_adult_51_years	chr2	105329640	105329671	105329670	-	High_confidence	11	11	19	1.400105	3.576618	chr2	105329666	105329774	LTR|ERV1|LTR2752	-	chr2	105264389	105329714	TGFBRAP1|NM_001142621.2	-	105264389,105269271,105272854,105273543,105275559,105277613,105280381,105284315,105296355,105298510,105307613,105329624	105267559,105269705,105273014,105273690,105275703,105277671,105280723,105284398,105296510,105298705,105308315,105329714	1.000000
spleen_female_adult_51_years	chr3	46463626	46463654	46463632	-	High_confidence	33	36	125	9.211218	5.290626	chr3	46463529	46463617	LTR|Gypsy|MamGypsy2-LTR	-	chr3	46436004	46463671	LTF|NM_001199149.1	-	46436004,46437939,46439295,46441415,46443440,46445280,46446439,46447307,46448862,46449853,46450494,46454304,46455294,46455795,46456289,46459655,46463443	46436229,46438129,46439480,46441483,46443582,46445436,46446493,46447398,46449017,46450028,46450673,46454360,46455442,46455978,46456398,46459819,46463671	0.912000
spleen_female_adult_51_years	chr14	95516119	95516123	95516122	+	High_confidence	46	94	163	12.011429	5.433167	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.963190
spleen_female_adult_51_years	chr2	185782489	185782511	185782507	+	RAMPAGE_only	2	2	8	0.589518	2.521641	chr2	185782182	185782614	LINE|L2|L2c	-	chr2	185738894	185833290	FSIP2|ENST00000424728.5	+	185738894,185739345,185743132,185744321,185745428,185746668,185747312,185753721,185756191,185760987,185761971,185763182,185764501,185782704,185786251,185788642,185799696,185813544,185815370,185824433,185828155,185831812,185833089	185738993,185739471,185743294,185744411,185745568,185746810,185747423,185753842,185756278,185761103,185762017,185763289,185764565,185782762,185786288,185797526,185809133,185814042,185815471,185824480,185828199,185831882,185833290	0.750000
spleen_female_adult_51_years	chr12	62381598	62381636	62381635	+	RAMPAGE_only	2	2	6	0.442138	2.584963	chr12	62381676	62381856	DNA|hAT-Charlie|MER106A	+	chr12	62380253	62404643	STRG.95785.6	+	62380253,62383839,62384077,62389604,62390863,62391156,62391815,62392255,62393052,62396294,62401186,62404192	62381663,62383998,62389514,62389988,62390979,62391429,62391886,62392387,62393202,62396398,62401275,62404643	0.666667
spleen_female_adult_51_years	chr7	85051466	85051467	85051466	-	RAMPAGE_only	8	8	9	0.663208	2.750000	chr7	85051293	85051729	LINE|L2|L2b	+	chr7	84999396	85041939	SEMA3D|ENST00000484038.1	-	84999396,85006801,85012781,85015058,85018251,85020232,85022390,85036888,85040672,85041837	84999865,85006941,85012846,85015216,85018293,85020321,85022613,85037033,85040742,85041939	0.777778
spleen_female_adult_51_years	chr2	10120434	10120435	10120434	+	High_confidence	12	12	14	1.031656	3.180833	chr2	10120422	10120535	SINE|Alu|FLAM_C	+	chr2	10120697	10131418	RRM2|ENST00000641198.1	+	10120697,10122754,10122982,10123386,10123735,10124716,10126874,10127086,10128847,10129040,10129233	10120882,10122897,10123057,10123530,10123852,10124850,10126969,10127220,10128952,10129154,10131418	0.857143
spleen_female_adult_51_years	chr2	7023778	7023781	7023778	+	RAMPAGE_only	8	8	22	1.621174	4.095795	chr2	7023743	7023814	SINE|MIR|MIRc	-	chr2	6996939	7068286	RNF144A|ENST00000432850.1	+	6996939,7014453,7014711,7020472,7024368,7030125,7068215	6997061,7014558,7014772,7020680,7024516,7030215,7068286	0.500000
spleen_female_adult_51_years	chr15	80017766	80017793	80017792	-	High_confidence	43	46	136	10.021806	4.697947	chr15	80016339	80017800	LTR|ERV1|LTR12C	+	chr15	79960891	80017789	STRG.111972.2	-	79960891,79967636,80017604	79961174,79967692,80017789	0.647059
spleen_female_adult_51_years	chr16	53445773	53445781	53445780	+	High_confidence	11	12	28	2.063313	4.315824	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.607143
spleen_female_adult_51_years	chr12	55930641	55930642	55930641	+	High_confidence	17	19	19	1.400105	3.471354	chr12	55930357	55930665	SINE|Alu|AluSc8	-	chr12	55930971	55954015	DGKA|ENST00000331886.9	+	55930971,55936422,55937016,55937407,55937977,55938510,55938914,55939185,55939414,55940081,55940313,55940623,55940896,55941251,55941509,55941997,55942173,55951622,55952034,55952340,55952733,55953039,55953349,55953684	55931344,55936567,55937090,55937543,55938052,55938560,55938989,55939305,55939529,55940170,55940433,55940722,55940980,55941325,55941584,55942083,55942263,55951783,55952099,55952431,55952932,55953160,55953410,55954015	0.684211
spleen_female_adult_51_years	chr10	77530005	77530025	77530024	-	RAMPAGE_only	2	2	8	0.589518	2.807355	chr10	77529952	77530020	SINE|MIR|MIR	-	chr10	77183472	77498970	KCNMA1|ENST00000640311.1	-	77183472,77184822,77251194,77403861,77493797,77498583	77183532,77184916,77251256,77404023,77493929,77498970	0.500000
spleen_female_adult_51_years	chr6	43013392	43013393	43013392	-	High_confidence	12	12	12	0.884277	3.584963	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
spleen_female_adult_51_years	chr4	184266275	184266280	184266275	-	High_confidence	15	15	25	1.842244	4.213661	chr4	184265538	184266558	LINE|L1|L1M6	+	chr4	184265288	184266263	STRG.41065.1	-	184265288	184266263	0.840000
spleen_female_adult_51_years	chr12	119704554	119704574	119704554	-	High_confidence	19	19	54	3.979246	5.003042	chr12	119704528	119704734	DNA|hAT-Charlie|MER20	-	chr12	119690400	119704720	STRG.99170.5	-	119690400,119697658,119697975,119700744,119701623,119701849,119704362	119690451,119697838,119698054,119700825,119701752,119701958,119704720	0.796296
spleen_female_adult_51_years	chr8	122671468	122671469	122671468	-	High_confidence	17	22	24	1.768554	2.954004	chr8	122671397	122672209	LINE|L1|HAL1	+	chr8	122670358	122671396	STRG.71572.1	-	122670358,122671268	122670500,122671396	0.541667
spleen_female_adult_51_years	chr1	147172975	147172993	147172975	+	High_confidence	5	5	13	0.957967	3.084963	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.846154
spleen_female_adult_53_years	chr11	1870255	1870314	1870255	+	High_confidence	21	23	76	4.514326	5.869574	chr11	1870205	1870284	SINE|MIR|MIRb	-	chr11	1870251	1892263	LSP1|NM_001289005.1	+	1870251,1880086,1881431,1883418,1883931,1884279,1884499,1886731,1887236,1887473,1891772	1870661,1880224,1881596,1883560,1884024,1884323,1884581,1886866,1887314,1887576,1892263	0.789474
spleen_female_adult_53_years	chr10	74138888	74138913	74138888	-	RAMPAGE_only	2	2	8	0.475192	2.521641	chr10	74138649	74138959	SINE|Alu|AluJo	+	chr10	74120256	74150791	AP3M1|NM_001320264.1	-	74120256,74124379,74126147,74129107,74129906,74134026,74136631,74138106,74150334	74123910,74124524,74126355,74129241,74129992,74134164,74136803,74138382,74150791	0.750000
spleen_female_adult_53_years	chr6	25002007	25002008	25002007	-	RAMPAGE_only	12	12	12	0.712788	3.251629	chr6	25001687	25002007	SINE|Alu|AluSc8	-	chr6	25001673	25003385	STRG.45542.1	-	25001673	25003385	0.916667
spleen_female_adult_53_years	chr2	240022216	240022244	240022243	-	RAMPAGE_only	4	4	13	0.772187	2.815072	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
spleen_female_adult_53_years	chr1	222737198	222737222	222737215	+	High_confidence	83	134	311	18.473099	6.800207	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737215	222750805	FAM177B|ENST00000391880.6	+	222737215,222737877,222746530,222747014,222748960,222749920	222737322,222738021,222746719,222747081,222749562,222750805	0.639871
spleen_female_adult_53_years	chr13	29647246	29647273	29647272	+	High_confidence	3	3	7	0.415793	2.584963	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.571429
spleen_female_adult_53_years	chr4	86453161	86453207	86453161	-	High_confidence	6	6	46	2.732356	4.825186	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86159297	86453162	MAPK10|ENST00000642049.1	-	86159297,86194318,86354529,86370713,86453029	86159467,86194407,86354644,86370867,86453162	0.739130
spleen_female_adult_53_years	chr9	20658606	20658634	20658607	+	High_confidence	12	17	39	2.316562	4.375263	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.538462
spleen_female_adult_53_years	chr9	37532366	37532379	37532366	-	RAMPAGE_only	6	6	16	0.950385	3.000000	chr9	37532291	37532645	SINE|Alu|AluJb	-	chr9	37521717	37536062	FBXO10|ENST00000543968.5	-	37521717,37522824,37525101,37529123,37531908,37535991	37521901,37522977,37525172,37529260,37532058,37536062	0.750000
spleen_female_adult_53_years	chr2	47369479	47369492	47369479	+	High_confidence	3	3	15	0.890985	3.093069	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369474	47375254	EPCAM|ENST00000474691.1	+	47369474,47373462,47375233	47369581,47374048,47375254	0.666667
spleen_female_adult_53_years	chr21	45615962	45615976	45615975	-	High_confidence	3	3	10	0.593990	3.321928	chr21	45615778	45616074	SINE|Alu|AluY	+	chr21	45615480	45616033	STRG.119266.1	-	45615480	45616033	0.700000
spleen_female_adult_53_years	chr19	49560363	49560364	49560363	-	High_confidence	16	16	22	1.306779	3.408695	chr19	49560291	49560459	SINE|MIR|MIR	+	chr19	49557876	49560397	NOSIP|ENST00000598839.1	-	49557876,49558061,49558896,49559933	49557945,49558199,49558978,49560397	0.863636
spleen_female_adult_53_years	chr3	28291847	28291848	28291847	+	High_confidence	98	108	133	7.900071	5.691974	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.661654
spleen_female_adult_53_years	chr14	50756879	50756943	50756903	-	RAMPAGE_only	9	9	44	2.613557	4.606937	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.931818
spleen_female_adult_53_years	chr14	80455231	80455243	80455242	+	RAMPAGE_only	7	7	21	1.247380	3.684184	chr14	80455279	80455449	LTR|ERVL-MaLR|MLT1J	+	chr14	80464897	80475473	STRG.95462.1	+	80464897,80471859,80475320	80464956,80472020,80475473	0.523810
spleen_female_adult_53_years	chr8	48518081	48518082	48518081	-	High_confidence	6	8	8	0.475192	2.750000	chr8	48517923	48518278	LTR|ERVL-MaLR|THE1A	-	chr8	48515851	48517089	AC026904.1|ENST00000521359.1	-	48515851,48517057	48516356,48517089	1.000000
spleen_female_adult_53_years	chr22	42721166	42721167	42721166	-	High_confidence	8	8	8	0.475192	3.000000	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	1.000000
spleen_female_adult_53_years	chr14	91241886	91241894	91241886	+	RAMPAGE_only	2	2	8	0.475192	2.750000	chr14	91241759	91242172	LINE|L2|L2a	-	chr14	91242934	91252211	AL135818.1|ENST00000554096.2	+	91242934,91243912,91244354,91250764	91243013,91243981,91244499,91252211	0.625000
spleen_female_adult_53_years	chr16	53456881	53456904	53456881	+	RAMPAGE_only	4	4	14	0.831586	3.700440	chr16	53456559	53457052	LINE|L2|L2a	+	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.500000
spleen_female_adult_53_years	chr7	2870773	2870786	2870773	-	RAMPAGE_only	2	3	7	0.415793	2.807355	chr7	2870624	2870907	LTR|ERVL|LTR16B1	-	chr7	2844443	2845967	STRG.52560.1	-	2844443	2845967	0.571429
spleen_female_adult_53_years	chr12	50923952	50923980	50923971	+	High_confidence	5	6	24	1.425577	3.823068	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	0.750000
spleen_female_adult_53_years	chrX	16712839	16712890	16712889	-	High_confidence	4	4	18	1.069183	3.690117	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.888889
spleen_female_adult_53_years	chr8	100313456	100313466	100313456	-	RAMPAGE_only	5	5	14	0.831586	2.753434	chr8	100313122	100313809	LINE|L2|L2b	-	chr8	100257341	100310327	RNF19A|ENST00000341084.6	-	100257341,100259853,100261541,100264033,100264670,100268784,100269868,100274952,100287500,100309866	100259246,100259997,100261755,100264195,100264785,100268947,100270013,100275161,100288267,100310327	0.785714
spleen_female_adult_53_years	chr10	4678146	4678177	4678146	-	High_confidence	38	42	146	8.672259	4.877398	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.760274
spleen_female_adult_53_years	chr12	92157079	92157139	92157137	-	High_confidence	22	36	89	5.286514	5.405419	chr12	92156657	92157505	LTR|ERVL|MER21B	+	chr12	92155786	92157118	STRG.87518.1	-	92155786	92157118	0.528090
spleen_female_adult_53_years	chr1	235865114	235865169	235865123	-	RAMPAGE_only	12	14	57	3.385745	4.793477	chr1	235864944	235865509	LINE|L2|L2a	+	chr1	235829408	235866876	LYST|ENST00000468626.2	-	235829408,235833577,235866842	235830424,235833667,235866876	0.701754
spleen_female_adult_53_years	chr6	11350592	11350606	11350592	+	High_confidence	6	10	18	1.069183	3.794653	chr6	11350582	11350693	LINE|CR1|L3	-	chr6	11350715	11351903	STRG.45028.1	+	11350715,11351497	11350780,11351903	0.666667
spleen_female_adult_53_years	chr19	46350849	46350867	46350849	+	RAMPAGE_only	96	108	175	10.394831	5.250805	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.914286
spleen_female_adult_53_years	chr1	110897839	110897876	110897875	+	RAMPAGE_only	8	8	13	0.772187	3.392747	chr1	110897898	110898002	SINE|MIR|MIR	+	chr1	110894308	110899851	CD53|ENST00000497404.1	+	110894308,110894959,110899123	110894401,110895055,110899851	0.769231
spleen_female_adult_53_years	chr2	174410269	174410287	174410286	+	High_confidence	4	6	10	0.593990	2.921928	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.900000
spleen_female_adult_53_years	chr14	75025219	75025244	75025243	-	RAMPAGE_only	10	11	37	2.197764	4.493150	chr14	75025064	75026121	LINE|L2|L2c	+	chr14	75015486	75023018	MLH3|ENST00000554697.5	-	75015486,75017007,75018828,75022813,75022994	75015862,75017201,75018980,75022892,75023018	0.702703
spleen_female_adult_53_years	chr7	37685425	37685467	37685466	+	RAMPAGE_only	2	2	7	0.415793	2.807355	chr7	37685438	37685747	SINE|Alu|AluJb	-	chr7	37683871	37741374	GPR141|ENST00000447769.1	+	37683871,37685178,37729915,37740379	37683903,37685298,37730038,37741374	0.714286
spleen_female_adult_53_years	chr9	77945016	77945044	77945034	-	RAMPAGE_only	4	4	17	1.009784	3.625000	chr9	77944910	77945186	DNA|TcMar-Tigger|Tigger19b	+	chr9	77797527	78030604	GNAQ|ENST00000411677.1	-	77797527,77815615,77922160,78030514	77797648,77815770,77922345,78030604	0.588235
spleen_female_adult_53_years	chr17	7342437	7342450	7342437	+	High_confidence	5	5	18	1.069183	3.725481	chr17	7342483	7342617	SINE|Alu|AluJb	+	chr17	7342194	7344123	ACAP1|ENST00000573893.5	+	7342194,7342415,7343378,7343705,7343860,7344048	7342328,7342474,7343562,7343750,7343956,7344123	0.777778
spleen_female_adult_53_years	chr8	116648847	116648905	116648847	-	RAMPAGE_only	10	10	56	3.326346	4.800011	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.964286
spleen_female_adult_53_years	chr7	37353636	37353674	37353636	-	High_confidence	51	52	234	13.899374	6.015765	chr7	37353223	37353900	LTR|ERV1|LTR12_	-	chr7	36852905	37353668	ELMO1|NM_001206482.1	-	36852905,36861658,36870392,36878009,36887559,36894853,37013298,37096618,37133129,37211385,37213334,37216644,37222614,37224878,37233094,37244355,37259180,37271831,37314849,37315919,37342612,37353031	36855751,36861736,36870475,36878117,36887672,36895017,37013435,37096727,37133234,37211517,37213457,37216695,37222693,37225030,37233194,37244391,37259350,37271882,37314922,37315960,37342763,37353668	0.948718
spleen_female_adult_53_years	chr16	8644375	8644386	8644385	+	RAMPAGE_only	11	12	18	1.069183	3.337175	chr16	8644288	8644447	SINE|MIR|MIRb	+	chr16	8642467	8645044	METTL22|ENST00000562973.1	+	8642467,8644556	8642565,8645044	0.666667
spleen_female_adult_53_years	chr2	144319869	144319870	144319869	-	High_confidence	6	6	6	0.356394	2.584963	chr2	144319780	144319934	LINE|RTE-BovB|MamRTE1	+	chr2	144210834	144319870	GTDC1|ENST00000467352.1	-	144210834,144211514,144235675,144317478,144319718	144211237,144211579,144235737,144317588,144319870	0.500000
spleen_female_adult_53_years	chr2	55228153	55228165	55228158	-	High_confidence	37	43	92	5.464711	5.822156	chr2	55228053	55228212	LINE|L2|L2c	+	chr2	55218344	55229142	STRG.14176.7	-	55218344	55229142	0.989130
spleen_female_adult_53_years	chr19	34860575	34860654	34860575	-	High_confidence	19	19	86	5.108317	5.029300	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.639535
spleen_female_adult_53_years	chr4	79493274	79493298	79493274	+	High_confidence	2	2	11	0.653389	3.459432	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.636364
spleen_female_adult_53_years	chr13	48492746	48492784	48492783	-	High_confidence	5	5	12	0.712788	3.459432	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.666667
spleen_female_adult_53_years	chr14	73109465	73109481	73109480	+	RAMPAGE_only	3	4	7	0.415793	2.521641	chr14	73109511	73109779	SINE|Alu|AluY	+	chr14	73107301	73121313	RBM25|ENST00000527449.1	+	73107301,73109341,73110830,73112151,73114285,73119712	73107899,73109492,73111802,73112250,73114333,73121313	1.000000
spleen_female_adult_53_years	chr11	65429216	65429581	65429580	+	RAMPAGE_only	78	78	461	27.382954	5.245042	chr11	65429519	65429591	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.991323
spleen_female_adult_53_years	chr5	133089677	133089678	133089677	+	RAMPAGE_only	12	13	14	0.831586	3.700440	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.857143
spleen_female_adult_53_years	chr5	170267249	170267260	170267255	-	High_confidence	3	4	12	0.712788	3.188722	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	1.000000
spleen_female_adult_53_years	chr11	10806194	10806195	10806194	-	High_confidence	22	22	26	1.544375	3.748329	chr11	10806178	10806347	DNA|hAT-Charlie|MER5A	-	chr11	10804291	10806263	EIF4G2|ENST00000532152.5	-	10804291,10804912,10805906	10804418,10805015,10806263	0.923077
spleen_female_adult_53_years	chr5	131210087	131210096	131210087	+	RAMPAGE_only	2	2	8	0.475192	2.521641	chr5	131209839	131210243	LTR|ERVL-MaLR|MSTB	+	chr5	131253052	131393106	STRG.42079.3	+	131253052,131315975,131359208,131385542,131390992,131391828	131253129,131316144,131359547,131385644,131391108,131393106	0.500000
spleen_female_adult_53_years	chr2	96638013	96638042	96638022	-	High_confidence	3	3	17	1.009784	3.625000	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.529412
spleen_female_adult_53_years	chr1	207069255	207069292	207069255	+	RAMPAGE_only	3	3	16	0.950385	3.640224	chr1	207069286	207069328	SINE|MIR|MIRb	+	chr1	207053310	207081024	PFKFB2|ENST00000367079.3	+	207053310,207054700,207061952,207062619,207063142,207063346,207063772,207065035,207067498,207068162,207069423,207070279,207071187,207071508,207078953	207053366,207054802,207062078,207062716,207063209,207063421,207063829,207065160,207067706,207068309,207069528,207070409,207071250,207071573,207081024	0.500000
spleen_female_adult_53_years	chr12	79873266	79873267	79873266	-	High_confidence	9	10	12	0.712788	3.277613	chr12	79873243	79873519	DNA|hAT-Charlie|Charlie1a	+	chr12	79828370	79872872	PPP1R12A|ENST00000548318.1	-	79828370,79832331,79845301,79848787,79872807	79828464,79832491,79845420,79848931,79872872	0.833333
spleen_female_adult_53_years	chr19	54238407	54238494	54238407	-	RAMPAGE_only	8	8	53	3.148149	5.052931	chr19	54238335	54238468	LINE|L1|L1ME3B	-	chr19	54235650	54242555	STRG.114767.24	-	54235650,54239900,54240273,54240830,54241575,54242025,54242518	54239262,54239951,54240576,54241127,54241878,54242310,54242555	1.000000
spleen_female_adult_53_years	chr10	102449836	102449845	102449836	+	High_confidence	13	13	43	2.554158	4.603056	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.697674
spleen_female_adult_53_years	chr12	119184126	119184128	119184127	-	High_confidence	10	13	16	0.950385	3.750000	chr12	119183922	119184154	SINE|MIR|MIRc	-	chr12	119182047	119183259	AC084880.3|ENST00000535921.1	-	119182047,119182873	119182202,119183259	0.625000
spleen_female_adult_53_years	chr1	36479634	36479648	36479634	-	High_confidence	5	5	12	0.712788	3.095795	chr1	36479521	36479739	SINE|MIR|MIRb	+	chr1	36466043	36479519	CSF3R|ENST00000361632.8	-	36466043,36467229,36467557,36467821,36468074,36469155,36469651,36471432,36472065,36472237,36472516,36473434,36473763,36475376,36479432	36466827,36467311,36467651,36467962,36468221,36469257,36469840,36471646,36472139,36472391,36472686,36473622,36473887,36475673,36479519	0.583333
spleen_female_adult_53_years	chr14	81170372	81170413	81170402	-	High_confidence	9	9	37	2.197764	4.650572	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.891892
spleen_female_adult_53_years	chr16	66408519	66408564	66408519	+	High_confidence	14	14	51	3.029351	4.998563	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.823529
spleen_female_adult_53_years	chr6	7154709	7154710	7154709	+	RAMPAGE_only	7	7	10	0.593990	2.725481	chr6	7154535	7154760	SINE|MIR|MIR	-	chr6	7139244	7230433	RREB1|ENST00000483150.1	+	7139244,7140647,7176654,7181123,7181869,7187433,7189158,7210803,7211572,7226466,7228996	7139298,7140808,7176773,7181246,7182082,7187523,7189322,7210948,7211709,7226656,7230433	0.500000
spleen_female_adult_53_years	chr12	55930641	55930642	55930641	+	High_confidence	19	22	22	1.306779	3.788755	chr12	55930357	55930665	SINE|Alu|AluSc8	-	chr12	55930971	55954015	DGKA|ENST00000331886.9	+	55930971,55936422,55937016,55937407,55937977,55938510,55938914,55939185,55939414,55940081,55940313,55940623,55940896,55941251,55941509,55941997,55942173,55951622,55952034,55952340,55952733,55953039,55953349,55953684	55931344,55936567,55937090,55937543,55938052,55938560,55938989,55939305,55939529,55940170,55940433,55940722,55940980,55941325,55941584,55942083,55942263,55951783,55952099,55952431,55952932,55953160,55953410,55954015	0.954545
spleen_female_adult_53_years	chr11	12195916	12195942	12195916	+	High_confidence	5	5	25	1.484976	4.088779	chr11	12195751	12196592	LINE|L2|L2	-	chr11	12195944	12197811	MICAL2|ENST00000532166.5	+	12195944,12197486	12196200,12197811	0.640000
spleen_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	16	16	16	0.950385	3.452820	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.687500
spleen_female_adult_53_years	chr10	59578772	59578789	59578772	+	High_confidence	6	7	18	1.069183	3.725481	chr10	59578519	59579195	LINE|L1|L1MDa	-	chr10	59578466	59596363	AC026391.1|ENST00000647375.1	+	59578466,59594951,59596324	59579076,59595051,59596363	0.722222
spleen_female_adult_53_years	chr11	57092348	57092388	57092387	-	High_confidence	7	7	33	1.960168	4.017900	chr11	57091950	57092364	LINE|L1|L1PA10	-	chr11	56782335	57092236	STRG.78294.1	-	56782335,56797403,56798634,56823661,56975082,57005728,57029060,57091973	56785057,56797516,56798722,56823781,57002624,57015348,57045344,57092236	0.939394
spleen_female_adult_53_years	chr19	47751095	47751103	47751102	+	RAMPAGE_only	4	6	8	0.475192	2.500000	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47745564	47756744	NOP53|ENST00000598681.5	+	47745564,47746966,47750177,47750907,47751519,47752511,47754526,47754708,47755347,47756527,47756687	47745783,47747031,47750286,47751107,47751590,47752607,47754631,47754891,47755523,47756604,47756744	1.000000
spleen_female_adult_53_years	chr12	29574669	29574682	29574681	-	RAMPAGE_only	7	8	14	0.831586	3.467720	chr12	29574466	29574865	LTR|ERVL-MaLR|MLT1A	-	chr12	29568720	29604224	TMTC1|ENST00000550354.1	-	29568720,29572104,29583406,29604177	29568984,29572218,29583574,29604224	0.500000
spleen_female_adult_53_years	chr1	20895568	20895569	20895568	-	RAMPAGE_only	6	6	7	0.415793	2.584963	chr1	20895547	20896174	DNA|TcMar-Tigger|Tigger3b	+	chr1	20807003	21176847	EIF4G3|ENST00000400422.6	-	20807003,20810737,20813157,20817391,20825099,20827616,20829146,20840855,20849414,20851257,20853559,20854977,20857402,20860384,20862227,20864475,20865115,20879322,20886200,20892618,20893516,20895367,20899696,20904882,20941490,20950002,20969473,20973001,20980333,20981047,21002712,21050865,21089137,21176174,21176721	20807500,20810884,20813239,20817538,20825198,20827698,20829272,20841028,20849530,20851478,20853677,20855071,20857497,20860517,20862332,20864712,20865262,20879520,20886371,20892729,20893636,20895501,20899943,20904971,20942330,20950108,20969596,20973099,20980448,20981227,21002808,21050994,21089213,21176358,21176847	0.571429
spleen_female_adult_53_years	chr2	218125306	218125315	218125314	+	High_confidence	6	8	15	0.890985	3.506891	chr2	218123953	218125352	LINE|L1|L1PBb	-	chr2	218125289	218137253	CXCR2|NM_001168298.1	+	218125289,218126290,218129313,218134776	218125359,218126353,218129365,218137253	0.733333
spleen_female_adult_53_years	chr9	127451078	127451108	127451087	-	High_confidence	4	4	15	0.890985	3.139572	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.933333
spleen_female_adult_53_years	chr11	87359622	87359647	87359646	+	High_confidence	22	22	54	3.207548	4.156137	chr11	87359683	87359924	LTR|ERVL|LTR18A	+	chr11	87359466	87553871	STRG.80414.1	+	87359466,87362356,87553298	87359950,87362476,87553871	0.833333
spleen_female_adult_53_years	chr2	230925228	230925265	230925264	-	High_confidence	13	13	37	2.197764	4.280682	chr2	230925193	230925329	SINE|MIR|MIR3	+	chr2	230907317	230925226	GPR55|ENST00000444078.5	-	230907317,230909621,230925167	230908310,230911096,230925226	0.783784
spleen_female_adult_53_years	chr9	340308	340311	340308	+	RAMPAGE_only	12	12	21	1.247380	3.721928	chr9	340339	340643	SINE|Alu|AluSz6	+	chr9	366250	465255	DOCK8|ENST00000382329.1	+	366250,368017,370229,371427,372184,376209,376976,379770,382512,386330,390470,396784,399145,404917,406929,414781,418067,420400,420948,422047,426884,428361,429701,432165,433874,434782,439244,441285,441874,443426,446369,449783,452010,463516,464158	366552,368300,370300,371566,372286,376305,377211,379935,382685,386426,390566,396934,399259,405073,407069,414951,418207,420583,421078,422135,426981,428496,429854,432324,433975,434975,439388,441417,442009,443516,446606,449927,452117,463687,465255	0.904762
spleen_female_adult_53_years	chr7	2870685	2870711	2870710	-	RAMPAGE_only	9	13	25	1.484976	4.483856	chr7	2870624	2870907	LTR|ERVL|LTR16B1	-	chr7	2844443	2845967	STRG.52560.1	-	2844443	2845967	0.640000
spleen_female_adult_53_years	chr17	59209389	59209418	59209392	+	High_confidence	14	14	26	1.544375	3.893661	chr17	59209373	59209528	SINE|Alu|AluSx3	-	chr17	59209573	59213597	STRG.107648.1	+	59209573,59212340,59212728	59211810,59212486,59213597	0.615385
spleen_female_adult_53_years	chr11	73272240	73272248	73272240	+	High_confidence	11	11	24	1.425577	4.088779	chr11	73272218	73272327	SINE|MIR|MIRc	+	chr11	73272201	73298617	P2RY6|ENST00000393590.2	+	73272201,73296484	73272466,73298617	0.750000
spleen_female_adult_53_years	chr17	4143196	4143215	4143199	+	High_confidence	38	44	124	7.365480	5.810837	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.951613
spleen_female_adult_53_years	chr11	123061207	123061257	123061256	-	High_confidence	137	139	251	14.909157	5.223822	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.956175
spleen_female_adult_53_years	chr3	153155302	153155303	153155302	-	High_confidence	9	9	9	0.534591	2.947703	chr3	153154903	153156285	LTR|ERV1|LTR12C	-	chr3	153154877	153155212	STRG.28706.1	-	153154877	153155212	0.666667
spleen_female_adult_53_years	chr12	105148987	105149004	105148987	+	RAMPAGE_only	3	3	8	0.475192	2.521641	chr12	105148898	105149098	LINE|L2|L2c	+	chr12	105144717	105160094	STRG.88323.9	+	105144717,105146451,105147041,105152342,105156725,105157235,105160000	105144872,105146526,105149749,105152451,105156792,105157322,105160094	0.875000
spleen_female_adult_53_years	chr16	12539321	12539339	12539321	+	RAMPAGE_only	4	4	14	0.831586	3.546594	chr16	12539107	12540236	LINE|L1|L1MD3	-	chr16	11976737	12574289	SNX29|ENST00000566228.5	+	11976737,11999296,12002990,12027319,12042896,12046383,12048371,12051846,12061527,12069056,12078832,12126632,12129629,12199600,12277932,12356162,12398445,12403447,12477718,12524701,12568505	11976813,11999358,12003043,12027444,12043077,12046454,12048620,12052222,12061646,12069132,12078915,12126696,12129758,12199683,12278036,12356279,12398501,12403529,12477859,12524841,12574289	0.857143
spleen_female_adult_53_years	chr9	128684459	128684485	128684459	-	High_confidence	19	20	103	6.118100	5.800469	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128681907	128684483	STRG.70696.1	-	128681907,128682191	128681942,128684483	0.834951
spleen_female_adult_53_years	chr17	2975647	2975667	2975666	+	RAMPAGE_only	3	4	11	0.653389	2.921928	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.909091
spleen_female_adult_53_years	chr14	106844761	106844800	106844797	-	High_confidence	14	14	48	2.851154	4.662782	chr14	106836775	106845293	LTR|ERV1|HERV3-int	-	chr14	106843710	106844785	STRG.97641.1	-	106843710	106844785	0.916667
spleen_female_adult_53_years	chr3	122713160	122713165	122713160	+	RAMPAGE_only	7	7	13	0.772187	3.022055	chr3	122712966	122713219	LINE|L1|L1PB2	-	chr3	122680860	122730825	STRG.27180.5	+	122680860,122685184,122687079,122692300,122695425,122699389,122703741,122704526,122708189,122713871,122718070,122720254,122728307	122681070,122685318,122687113,122692543,122695662,122701635,122703978,122704748,122713573,122714429,122718958,122727986,122730825	0.923077
spleen_female_adult_53_years	chr17	80289592	80289631	80289592	+	High_confidence	4	9	17	1.009784	3.454822	chr17	80289307	80289613	SINE|Alu|AluSq	+	chr17	80289760	80292007	RNF213|ENST00000573548.1	+	80289760,80290569,80291627	80289837,80290728,80292007	0.705882
spleen_female_adult_53_years	chr1	1655395	1655410	1655409	-	RAMPAGE_only	11	13	22	1.306779	4.106603	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.772727
spleen_female_adult_53_years	chr1	75375985	75376005	75375985	-	RAMPAGE_only	4	4	14	0.831586	2.719295	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75219273	75275026	STRG.4060.1	-	75219273,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957	75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275026	0.928571
spleen_female_adult_53_years	chr20	35605298	35605326	35605325	-	High_confidence	22	24	58	3.445144	5.500138	chr20	35605067	35605498	LINE|L2|L2c	+	chr20	35600698	35605326	FER1L4|ENST00000325076.9	-	35600698,35601531,35601805,35603009,35603258,35603796,35604303,35604529,35605101	35600924,35601718,35602751,35603141,35603319,35603967,35604345,35604621,35605326	0.793103
spleen_female_adult_53_years	chr12	883822	883830	883829	+	RAMPAGE_only	10	10	19	1.128582	3.892407	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	867793	908201	STRG.82777.7	+	867793,881691,881910,882942,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846	878361,881789,882073,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,908201	1.000000
spleen_female_adult_53_years	chr18	7946878	7946898	7946878	+	High_confidence	75	75	232	13.780576	5.599330	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.905172
spleen_female_adult_53_years	chr20	37694928	37694934	37694933	+	High_confidence	7	7	17	1.009784	3.155639	chr20	37694952	37695205	DNA|hAT-Charlie|MER33	+	chr20	37694061	37872117	CTNNBL1|ENST00000628103.2	+	37694061,37727301,37732878,37737377,37746467,37757558,37765196,37767952,37777344,37777653,37779186,37802866,37840101,37842338,37859898,37860271,37871924	37694152,37727402,37733067,37737484,37746607,37757656,37765290,37768044,37777417,37777712,37779335,37803048,37840199,37842419,37860036,37860344,37872117	0.941176
spleen_female_adult_53_years	chr17	47067498	47067518	47067498	-	High_confidence	119	132	659	39.143963	5.878970	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.934750
spleen_female_adult_53_years	chr16	19487898	19487900	19487898	-	High_confidence	12	16	22	1.306779	3.653757	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.727273
spleen_female_adult_53_years	chr4	25861746	25861747	25861746	+	High_confidence	5	6	8	0.475192	3.000000	chr4	25861658	25861751	DNA|hAT?|UCON80	+	chr4	25861829	25929545	SMIM20|ENST00000515764.2	+	25861829,25928312,25929153	25862153,25928369,25929545	0.625000
spleen_female_adult_53_years	chr11	77175226	77175303	77175226	+	High_confidence	44	47	185	10.988821	5.914576	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.962162
spleen_female_adult_53_years	chr5	150640038	150640051	150640050	+	High_confidence	20	23	76	4.514326	5.612866	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150639813	150659220	STRG.43081.5	+	150639813,150647943,150656403	150640134,150650303,150659220	1.000000
spleen_female_adult_53_years	chr2	24887136	24887185	24887184	-	High_confidence	33	33	51	3.029351	5.226251	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24841324	24887169	STRG.12739.7	-	24841324,24841555,24842253,24872569,24887092	24841386,24841667,24842384,24872719,24887169	0.921569
spleen_female_adult_53_years	chr22	50541367	50541389	50541367	+	High_confidence	10	10	48	2.851154	5.283208	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50540780	50542975	STRG.121471.1	+	50540780,50542566	50541456,50542975	0.666667
spleen_female_adult_53_years	chr6	43013392	43013393	43013392	-	High_confidence	5	5	8	0.475192	2.807355	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.875000
spleen_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	36	36	36	2.138365	3.335506	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
spleen_female_adult_53_years	chr10	79446868	79446869	79446868	-	RAMPAGE_only	14	14	17	1.009784	3.030639	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.941176
spleen_female_adult_53_years	chr17	336651	336665	336664	-	High_confidence	3	3	9	0.534591	3.169925	chr17	336507	336888	LINE|L2|L2	+	chr17	213644	336779	STRG.104679.2	-	213644,215653,219622,247110,281767,319419,321271,327466,333758,335774	213923,215802,219736,247285,281854,319549,321415,327579,333934,336779	1.000000
spleen_female_adult_53_years	chr16	3129654	3129669	3129668	-	RAMPAGE_only	3	4	11	0.653389	3.121928	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3128832	3132042	ZNF213-AS1|ENST00000573447.1	-	3128832,3131746	3129653,3132042	0.545455
spleen_female_adult_53_years	chrX	74254130	74254301	74254198	-	RAMPAGE_only	19	24	102	6.058701	4.902861	chrX	74254189	74254325	LTR|ERV1|HUERS-P3b-int	+	chrX	74184117	74292075	STRG.124932.2	-	74184117,74267569,74280376,74280930,74281701,74291757	74267328,74274410,74280494,74281085,74281848,74292075	0.990196
spleen_female_adult_53_years	chr3	108125047	108125048	108125047	+	High_confidence	23	27	34	2.019567	4.513795	chr3	108124858	108125222	LTR|ERVL-MaLR|THE1C	+	chr3	108124610	108140312	STRG.26635.1	+	108124610	108140312	0.911765
spleen_female_adult_53_years	chr19	54572987	54573020	54573001	+	High_confidence	23	23	82	4.870721	5.355757	chr19	54572997	54573273	SINE|Alu|AluJr	-	chr19	54572996	54587560	LILRA2|NM_006866.3	+	54572996,54573697,54574075,54574300,54574730,54575255,54575806,54587200	54573435,54573912,54574111,54574582,54575033,54575552,54576109,54587560	0.853659
spleen_female_adult_53_years	chr12	95749177	95749178	95749177	+	High_confidence	207	212	242	14.374566	5.700423	chr12	95748861	95749284	LTR|ERV1|LTR7Y	+	chr12	95749184	95750280	STRG.87834.1	+	95749184	95750280	0.731405
spleen_female_adult_53_years	chr11	6690861	6690901	6690891	+	High_confidence	11	19	54	3.207548	5.103026	chr11	6690645	6690956	Retroposon|SVA|SVA_D	-	chr11	6690852	6692013	STRG.76866.1	+	6690852	6692013	0.574074
spleen_female_adult_53_years	chr8	16186271	16186273	16186271	-	High_confidence	25	35	41	2.435360	4.701944	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.829268
spleen_female_adult_53_years	chr7	100351300	100351322	100351300	+	RAMPAGE_only	2	2	8	0.475192	2.807355	chr7	100351233	100351301	SINE|Alu|FLAM_A	-	chr7	100336242	100351900	STRG.56292.19	+	100336242,100338178,100338772,100345864,100349716,100351251	100336337,100338264,100338889,100345968,100349887,100351900	0.750000
spleen_female_adult_53_years	chr2	11345395	11345456	11345455	-	High_confidence	4	4	16	0.950385	3.750000	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11179758	11345407	ROCK2|NM_001321643.1	-	11179758,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345407	0.562500
spleen_female_adult_53_years	chr5	109383422	109383449	109383422	-	High_confidence	4	5	17	1.009784	3.500000	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.941176
spleen_female_adult_53_years	chr1	147173219	147173250	147173219	+	High_confidence	4	4	15	0.890985	3.664498	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.733333
spleen_female_adult_53_years	chr6	144533105	144533112	144533105	+	RAMPAGE_only	8	8	16	0.950385	3.506891	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144344200	144678552	STRG.51299.2	+	144344200,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405	144344304,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678552	0.937500
spleen_female_adult_53_years	chr2	64932432	64932454	64932438	-	High_confidence	22	26	66	3.920336	5.549216	chr2	64932285	64932499	LTR|ERVL-MaLR|MLT1K	-	chr2	64925689	64932999	STRG.14777.2	-	64925689	64932999	0.590909
spleen_female_adult_53_years	chr2	201122589	201122590	201122589	+	High_confidence	7	8	10	0.593990	2.725481	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201122476	201130053	CFLAR|ENST00000425030.1	+	201122476,201129728	201122747,201130053	0.500000
spleen_female_adult_53_years	chr3	134485443	134485494	134485443	-	High_confidence	10	10	51	3.029351	5.039785	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.568627
spleen_female_adult_53_years	chr8	39083065	39083067	39083065	+	RAMPAGE_only	3	5	8	0.475192	2.521641	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.750000
spleen_female_adult_53_years	chr1	152143727	152143730	152143727	-	RAMPAGE_only	3	4	8	0.475192	2.521641	chr1	152143120	152143960	LINE|L1|L1MA10	-	chr1	152106316	152115454	TCHH|ENST00000614923.1	-	152106316,152113942,152115390	152113078,152114111,152115454	0.875000
spleen_female_adult_53_years	chr9	121207789	121207803	121207793	+	High_confidence	17	17	52	3.088750	4.527484	chr9	121207755	121207923	SINE|Alu|AluJb	-	chr9	121207793	121265186	GSN|ENST00000434663.5	+	121207793,121209295,121210235,121210783,121231164,121265153	121207897,121209397,121210329,121210867,121231303,121265186	0.846154
spleen_female_adult_53_years	chr5	34244753	34244816	34244778	-	High_confidence	9	9	56	3.326346	5.110577	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34159495	34244796	STRG.37542.3	-	34159495,34175444,34175821,34179012,34182679,34218294,34239374,34244615	34169153,34175537,34175957,34179097,34182867,34218450,34239448,34244796	0.785714
spleen_female_adult_53_years	chr14	95725403	95725431	95725430	+	RAMPAGE_only	3	3	7	0.415793	2.521641	chr14	95725236	95725714	LINE|L1|L1M1	-	chr14	95715479	95757656	AL139020.1|ENST00000556386.1	+	95715479,95717470,95755244	95715707,95717568,95757656	0.857143
spleen_female_adult_53_years	chr3	50312374	50312412	50312374	-	High_confidence	2	2	17	1.009784	3.750000	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50299888	50312381	HYAL1|NM_153281.1	-	50299888,50300987,50302056,50303787,50309658,50312263	50300800,50301077,50302980,50303953,50309777,50312381	0.882353
spleen_female_adult_53_years	chr2	96303159	96303178	96303177	-	RAMPAGE_only	7	8	17	1.009784	3.750000	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.882353
spleen_female_adult_53_years	chr9	123179220	123179221	123179220	-	RAMPAGE_only	28	28	41	2.435360	4.564154	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.951220
spleen_female_adult_53_years	chr17	13931154	13931183	13931154	-	RAMPAGE_only	2	3	8	0.475192	2.750000	chr17	13931030	13931624	LTR|ERVL-MaLR|MLT1L	+	chr17	13776831	13892839	COX10-AS1|ENST00000577798.6	-	13776831,13790268,13865078,13880301,13892724	13777349,13790313,13865266,13880371,13892839	1.000000
spleen_female_adult_53_years	chr2	37617327	37617329	37617328	+	High_confidence	4	7	8	0.475192	2.807355	chr2	37617134	37617513	LTR|ERVL-MaLR|THE1C	+	chr2	37617265	37618633	STRG.13330.1	+	37617265	37618633	0.625000
spleen_female_adult_53_years	chr20	48642627	48642628	48642627	-	High_confidence	12	12	14	0.831586	3.546594	chr20	48642615	48642719	SINE|MIR|MIRc	+	chr20	48642112	48642738	PREX1|ENST00000496915.1	-	48642112,48642406	48642258,48642738	0.571429
spleen_female_adult_53_years	chr16	57039681	57039704	57039691	+	RAMPAGE_only	6	6	20	1.187981	4.037401	chr16	57039438	57039725	SINE|Alu|AluJb	+	chr16	57034171	57083531	NLRC5|ENST00000538453.5	+	57034171,57036099,57037194,57039780,57040649,57041484,57041981,57043514,57045447,57046551,57047544,57051537,57054750,57055031,57055432,57058064,57058971,57059466,57061447,57061617,57065211,57066533,57067386,57067735,57069771,57070534,57074599,57076818,57077295,57077718,57077942,57079049,57079220,57079545,57081097,57081526,57082416	57034251,57036183,57037284,57039849,57040718,57041574,57042065,57043604,57045492,57046641,57047628,57051621,57054840,57055094,57055519,57058148,57059061,57059532,57061531,57061701,57065298,57066614,57067470,57067828,57069919,57070618,57074683,57076902,57077379,57077802,57078020,57079133,57079292,57079629,57081181,57081610,57083531	0.500000
spleen_female_adult_53_years	chr20	16864146	16864155	16864146	-	RAMPAGE_only	2	2	6	0.356394	2.584963	chr20	16864107	16864582	LTR|ERVL-MaLR|MLT1F1	+	chr20	16859109	16859528	STRG.115827.1	-	16859109	16859528	0.500000
spleen_female_adult_53_years	chr13	109732160	109732161	109732160	-	High_confidence	76	76	102	6.058701	5.155881	chr13	109731772	109733218	LTR|ERV1|LTR12C	-	chr13	109728326	109732171	STRG.92405.1	-	109728326	109732171	0.950980
spleen_female_adult_53_years	chr22	24011756	24011757	24011756	+	High_confidence	7	7	7	0.415793	2.807355	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
spleen_female_adult_53_years	chr19	58306115	58306142	58306141	+	High_confidence	8	8	18	1.069183	3.169925	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.555556
spleen_female_adult_53_years	chr2	70085609	70085630	70085609	-	High_confidence	6	6	10	0.593990	2.846439	chr2	70085547	70085755	SINE|MIR|MIR	+	chr2	69963301	70085575	PCBP1-AS1|ENST00000629184.2	-	69963301,69996685,70051202,70055713,70085546	69963500,69996888,70051305,70055910,70085575	0.700000
spleen_female_adult_53_years	chr8	117955738	117955758	117955757	-	RAMPAGE_only	12	13	19	1.128582	2.800045	chr8	117955568	117955856	SINE|Alu|AluSz6	-	chr8	117949687	117997252	STRG.64067.1	-	117949687,117968876,117989409	117968525,117989237,117997252	1.000000
spleen_female_adult_53_years	chr2	164761317	164761318	164761317	-	High_confidence	8	9	10	0.593990	2.947703	chr2	164761126	164761399	SINE|Alu|AluSp	+	chr2	164729929	164761395	STRG.18389.14	-	164729929,164743686,164761282	164730115,164743875,164761395	0.500000
spleen_female_adult_53_years	chr2	140785902	140785969	140785902	-	RAMPAGE_only	4	7	26	1.544375	3.455650	chr2	140785621	140786177	LINE|L2|L2c	+	chr2	140231422	142131701	LRP1B|ENST00000389484.7	-	140231422,140234785,140238151,140239441,140247085,140270241,140274423,140297807,140314934,140321962,140323892,140325761,140334452,140335614,140350796,140352952,140356341,140357978,140358820,140364660,140370709,140371178,140373007,140378179,140385892,140442503,140444329,140444562,140450567,140456454,140457462,140475137,140485342,140487616,140492607,140495564,140501686,140502962,140506795,140509927,140514652,140516888,140525843,140526236,140534020,140536580,140540972,140541778,140598630,140601449,140700249,140701720,140702140,140702426,140715972,140716681,140769212,140770880,140776097,140813656,140839990,140840917,140850101,140851651,140867589,140868098,140883816,140886137,140902919,140907876,140922964,140950234,140951859,140982159,140989531,140993994,141005334,141013555,141015695,141019921,141048985,141055115,141058882,141062050,141188420,141229182,141247225,141254521,141480395,141810278,142130647	140233326,140234884,140238296,140239532,140247162,140270346,140274598,140297969,140315099,140322088,140324066,140325878,140334559,140335838,140351038,140353072,140356476,140358116,140358946,140364783,140370842,140371285,140373137,140378286,140386009,140442623,140444449,140444679,140450661,140456603,140457651,140475337,140485524,140487739,140492693,140495748,140501874,140503103,140506918,140510056,140514772,140517011,140525993,140526350,140534140,140536709,140541098,140541971,140598835,140601639,140700621,140701845,140702292,140702553,140716102,140716816,140769344,140771006,140776238,140813806,140840085,140841092,140850329,140851783,140867834,140868263,140884021,140886335,140903165,140908077,140923147,140950402,140951940,140982276,140989657,140994135,141005457,141013745,141015915,141020102,141049222,141055259,141059054,141062273,141188583,141229440,141247354,141254641,141480533,141810401,142131701	0.961538
spleen_female_adult_53_years	chr9	131676834	131676840	131676834	-	RAMPAGE_only	48	57	104	6.177499	5.694498	chr9	131676817	131677003	DNA|hAT-Charlie|MER5A	+	chr9	131638697	131701649	STRG.70811.7	-	131638697,131643238,131650128,131650809,131676556	131638791,131643417,131650242,131650949,131701649	0.778846
spleen_female_adult_53_years	chr13	100213820	100213835	100213820	+	RAMPAGE_only	4	5	8	0.475192	2.750000	chr13	100212683	100214433	LINE|L1|L1MA3	-	chr13	100212749	100530432	STRG.92131.4	+	100212749,100235841,100257594,100262728,100268688,100273195,100301459,100302923,100307191,100309832,100330560,100340156,100368471,100425632,100449251,100515426,100527674,100530097	100214001,100235878,100257673,100262831,100268783,100273346,100301603,100302998,100307260,100309908,100330671,100340259,100368574,100425731,100449305,100515567,100527752,100530432	1.000000
spleen_female_adult_53_years	chr4	38816533	38816536	38816533	-	High_confidence	10	14	22	1.306779	4.201841	chr4	38816327	38816690	LTR|ERVL-MaLR|MSTA	-	chr4	38807120	38816866	STRG.32088.1	-	38807120	38816866	0.909091
spleen_female_adult_53_years	chr7	38259333	38259363	38259333	-	RAMPAGE_only	2	2	7	0.415793	2.521641	chr7	38259293	38259389	SINE|MIR|MIRb	+	chr7	38257878	38265678	TRGC1|ENST00000443402.6	-	38257878,38262170,38265348	38260230,38262218,38265678	0.857143
spleen_female_adult_53_years	chr19	41797152	41797180	41797152	+	High_confidence	25	25	53	3.148149	5.017559	chr19	41797124	41797442	LINE|L2|L2a	-	chr19	41797152	41797941	CEACAM3|ENST00000596544.1	+	41797152,41797588	41797273,41797941	0.924528
spleen_female_adult_53_years	chr5	175527982	175527983	175527982	+	RAMPAGE_only	11	12	16	0.950385	3.202820	chr5	175527915	175528208	SINE|Alu|AluYc3	-	chr5	175478497	175529742	SFXN1|NM_001322977.1	+	175478497,175492094,175509031,175510108,175511450,175512110,175513462,175516613,175521918,175522374,175526637	175478667,175492267,175509202,175510207,175511526,175512196,175513590,175516663,175521968,175522422,175529742	0.937500
spleen_female_adult_53_years	chr16	81842059	81842079	81842076	+	High_confidence	7	7	16	0.950385	3.323231	chr16	81842021	81842185	SINE|MIR|MIRb	-	chr16	81842719	81869277	PLCG2|ENST00000569523.1	+	81842719,81852049,81854443,81858262,81859115,81869213	81842867,81852126,81854587,81858356,81859163,81869277	0.937500
spleen_female_adult_53_years	chr22	50442852	50442874	50442852	+	High_confidence	3	3	9	0.534591	3.169925	chr22	50442883	50443168	SINE|Alu|AluSx1	+	chr22	50443086	50444378	PPP6R2|ENST00000470046.1	+	50443086,50444198	50444117,50444378	1.000000
spleen_female_adult_53_years	chr14	103931679	103931758	103931742	+	High_confidence	51	51	242	14.374566	6.110086	chr14	103931646	103932201	LTR|ERVL-MaLR|MLT1E2	+	chr14	103931600	103966828	STRG.97097.6	+	103931600,103955663,103963078,103965332,103966708	103931953,103955770,103963176,103965554,103966828	0.776860
spleen_female_adult_53_years	chr17	59729951	59729960	59729951	+	High_confidence	4	4	11	0.653389	2.732159	chr17	59729673	59729983	SINE|Alu|AluSq2	-	chr17	59729714	59737517	VMP1|ENST00000587259.5	+	59729714,59731420,59735337,59737452	59730017,59731522,59735473,59737517	0.545455
spleen_female_adult_53_years	chr16	65302377	65302378	65302377	-	RAMPAGE_only	9	9	10	0.593990	2.725481	chr16	65299948	65302691	LINE|L1|L1MCa	+	chr16	65285023	65571789	LINC00922|ENST00000564041.5	-	65285023,65311413,65354242,65356430,65363210,65363662,65371035,65372232,65375203,65571770	65285439,65311547,65354301,65356489,65363291,65363808,65371204,65372269,65375326,65571789	0.600000
spleen_female_adult_53_years	chr11	64799866	64799885	64799866	-	High_confidence	8	8	30	1.781971	4.280226	chr11	64799729	64799896	SINE|MIR|MIR	-	chr11	64789888	64799659	MAP4K2|ENST00000489952.5	-	64789888,64790187,64790393,64791908,64792171,64796272,64796492,64796633,64796808,64796981,64797103,64797274,64797500,64797625,64798793,64799420,64799604	64789959,64790274,64790462,64792086,64792422,64796390,64796553,64796713,64796893,64797023,64797192,64797380,64797534,64797664,64798837,64799479,64799659	0.833333
spleen_female_adult_53_years	chr15	33194695	33194714	33194708	-	High_confidence	6	6	16	0.950385	3.640224	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.875000
spleen_female_adult_53_years	chr3	31935001	31935030	31935024	-	RAMPAGE_only	5	7	24	1.425577	4.053509	chr3	31934831	31935041	LTR|ERVL-MaLR|MLT1J	-	chr3	31748013	31919500	OSBPL10|ENST00000467955.5	-	31748013,31830039,31876432,31879654,31919386	31748120,31830231,31876512,31879830,31919500	0.750000
spleen_female_adult_53_years	chr12	27579290	27579306	27579302	+	RAMPAGE_only	6	6	17	1.009784	3.734522	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.529412
spleen_female_adult_53_years	chr3	134597829	134597851	134597829	+	High_confidence	3	4	17	1.009784	3.410417	chr3	134597473	134597869	LTR|ERVL|ERV3-16A3_LTR	+	chr3	134597823	134628104	EPHB1|ENST00000472904.5	+	134597823,134615183,134627939	134597984,134615438,134628104	0.882353
spleen_female_adult_53_years	chr12	8567589	8567613	8567589	-	RAMPAGE_only	6	6	15	0.890985	3.807355	chr12	8567561	8568746	LTR|ERV1|MER52C	-	chr12	8533304	8540963	CLEC4E|ENST00000299663.7	-	8533304,8536089,8537114,8539216,8539854,8540760	8534809,8536205,8537266,8539306,8539947,8540963	0.733333
spleen_female_adult_53_years	chr16	20674765	20674775	20674765	+	High_confidence	2	3	6	0.356394	2.584963	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.666667
spleen_female_adult_53_years	chr2	3536827	3536873	3536839	-	High_confidence	8	8	41	2.435360	4.696103	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3533223	3536869	AC108488.1|ENST00000438482.1	-	3533223,3534112,3536723	3533848,3534255,3536869	0.658537
spleen_female_adult_53_years	chr12	108330141	108330148	108330141	-	RAMPAGE_only	4	6	10	0.593990	2.641604	chr12	108329939	108330453	LTR|ERVL-MaLR|MLT1H	+	chr12	108291569	108339313	CMKLR1|ENST00000552995.5	-	108291569,108329994,108339026	108292959,108330207,108339313	0.500000
spleen_female_adult_53_years	chr4	184265767	184265797	184265767	-	High_confidence	4	4	8	0.475192	2.750000	chr4	184265538	184266558	LINE|L1|L1M6	+	chr4	184265126	184266265	STRG.36797.1	-	184265126	184266265	0.500000
spleen_female_adult_53_years	chr9	20658334	20658349	20658338	+	High_confidence	35	35	100	5.939903	4.973666	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658322	20694766	STRG.66463.9	+	20658322,20694519	20658826,20694766	0.680000
spleen_female_adult_53_years	chr4	88456753	88456780	88456753	-	RAMPAGE_only	6	6	14	0.831586	2.815072	chr4	88456468	88456764	SINE|Alu|AluY	-	chr4	88411482	88419714	STRG.33629.1	-	88411482,88419301,88419573	88412122,88419408,88419714	0.500000
spleen_female_adult_53_years	chr22	39021125	39021156	39021155	+	High_confidence	67	69	247	14.671561	5.971276	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.971660
spleen_female_adult_53_years	chr1	222733207	222733220	222733219	+	RAMPAGE_only	4	4	14	0.831586	3.182006	chr1	222733044	222733380	SINE|Alu|AluSx	-	chr1	222713320	222735196	BROX|NM_001288580.1	+	222713320,222715683,222718924,222719262,222724091,222725449,222727167,222728742,222729619,222730026,222731356,222732627	222713416,222715800,222719031,222719359,222724164,222725555,222727257,222728828,222729701,222730177,222731516,222735196	0.928571
spleen_female_adult_53_years	chr1	147172975	147172997	147172975	+	High_confidence	4	6	18	1.069183	3.807764	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.944444
spleen_female_adult_53_years	chr19	9709659	9709660	9709659	+	High_confidence	42	42	52	3.088750	3.691511	chr19	9709309	9709779	LTR|ERV1|LTR10A	+	chr19	9709673	9722410	STRG.111727.1	+	9709673,9719542	9709992,9722410	0.942308
spleen_female_adult_53_years	chr17	64378873	64378881	64378873	-	High_confidence	17	18	31	1.841370	4.284684	chr17	64378696	64378922	SINE|MIR|MIRb	+	chr17	64377573	64378874	PECAM1|ENST00000569530.1	-	64377573,64378797	64378117,64378874	0.645161
spleen_female_adult_53_years	chr1	26284575	26284576	26284575	-	RAMPAGE_only	4	4	7	0.415793	2.807355	chr1	26284514	26284630	SINE|MIR|MIR3	-	chr1	26282304	26298026	UBXN11|ENST00000496466.1	-	26282304,26282648,26282863,26284141,26284361,26285822,26294204,26296918,26297426,26297961	26282569,26282789,26282937,26284281,26285541,26286037,26294331,26296995,26297481,26298026	1.000000
spleen_female_adult_53_years	chr1	26306932	26306948	26306932	-	High_confidence	5	5	10	0.593990	3.169925	chr1	26306920	26307081	SINE|MIR|MIRb	+	chr1	26294191	26306989	UBXN11|ENST00000450041.5	-	26294191,26296918,26297426,26297961,26301693,26306591,26306855	26294331,26296995,26297481,26298062,26301722,26306704,26306989	0.600000
spleen_female_adult_53_years	chr20	18794077	18794086	18794085	+	High_confidence	111	113	230	13.661778	3.769299	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.965217
spleen_female_adult_53_years	chr5	31530807	31530854	31530836	-	RAMPAGE_only	3	3	13	0.772187	2.661226	chr5	31530667	31530954	LINE|L2|L2c	+	chr5	31400496	31532061	DROSHA|ENST00000511367.6	-	31400496,31405676,31406852,31409055,31409249,31410745,31421271,31422786,31424426,31429474,31431575,31435764,31437238,31448546,31449280,31451532,31464235,31466181,31467938,31472062,31483553,31484880,31486490,31493206,31495285,31504554,31508620,31511034,31514987,31515453,31521122,31526078,31529039,31530797,31531989	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31422944,31424471,31429545,31431678,31435864,31437298,31448607,31449419,31451640,31464343,31466281,31468063,31472232,31483628,31484962,31486562,31493293,31495372,31504635,31508775,31511176,31515219,31515564,31521215,31526912,31529105,31530924,31532061	0.923077
spleen_female_adult_53_years	chr7	150433713	150433730	150433729	+	High_confidence	36	36	92	5.464711	5.989655	chr7	150433631	150433743	LINE|CR1|CR1_Mam	-	chr7	150433729	150448466	STRG.59130.2	+	150433729,150442548	150435370,150448466	0.902174
spleen_female_adult_53_years	chr21	36005313	36005320	36005319	+	High_confidence	48	49	82	4.870721	4.909507	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.939024
spleen_female_adult_53_years	chr19	45524139	45524140	45524139	+	RAMPAGE_only	9	9	13	0.772187	3.392747	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.923077
spleen_female_adult_53_years	chr9	101585871	101585892	101585891	-	RAMPAGE_only	4	6	10	0.593990	3.121928	chr9	101584953	101586373	LINE|L2|L2a	+	chr9	101569351	101738580	GRIN3A|NM_133445.2	-	101569351,101577767,101579195,101613375,101623317,101628255,101670059,101686595,101737280	101573513,101577844,101579360,101613527,101623433,101628401,101671107,101687200,101738580	0.800000
spleen_female_adult_53_years	chr17	42136477	42136504	42136477	-	High_confidence	15	19	56	3.326346	5.088343	chr17	42136440	42136680	SINE|MIR|MIRb	+	chr17	42128691	42136484	RAB5C|ENST00000550504.5	-	42128691,42130336,42136264	42128800,42130590,42136484	0.803571
spleen_female_adult_53_years	chr12	10553364	10553365	10553364	+	High_confidence	149	156	161	9.563244	6.382774	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.757764
spleen_female_adult_53_years	chr16	11670585	11670612	11670585	+	RAMPAGE_only	2	2	7	0.415793	2.807355	chr16	11670570	11670680	SINE|MIR|MIRc	-	chr16	11668432	11679159	SNN|NM_003498.5	+	11668432,11675974	11668540,11679159	0.857143
spleen_female_adult_53_years	chr14	101731410	101731433	101731413	+	High_confidence	82	82	150	8.909855	5.841409	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101731429	101732711	STRG.96774.1	+	101731429	101732711	0.980000
spleen_female_adult_53_years	chrX	108018843	108018875	108018874	+	RAMPAGE_only	5	8	16	0.950385	3.077820	chrX	108018632	108020157	LINE|L1|L1M2	-	chrX	108044969	108079184	VSIG1|ENST00000415430.7	+	108044969,108058037,108061427,108066935,108072676,108073249,108076076,108077047	108045179,108058201,108061535,108067134,108072832,108073369,108076218,108079184	0.875000
spleen_female_adult_53_years	chr12	109053951	109053972	109053951	-	High_confidence	21	21	82	4.870721	5.463384	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.768293
spleen_female_adult_53_years	chr19	54617128	54617153	54617147	+	High_confidence	52	54	209	12.414398	6.167890	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637076	STRG.114704.19	+	54617157,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633970,54635103,54635258,54635556,54636496,54636731	54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634763,54635179,54635296,54635609,54636652,54637076	0.904306
spleen_female_adult_53_years	chr1	36479038	36479043	36479038	-	RAMPAGE_only	13	13	25	1.484976	3.605389	chr1	36478957	36479259	LINE|CR1|L3	-	chr1	36466095	36482899	STRG.1717.6	-	36466095,36467229,36467557,36467821,36468074,36469155,36469651,36471432,36472065,36472237,36472516,36473434,36473763,36475376,36481477,36482810	36466827,36467311,36467651,36467962,36468221,36469257,36469840,36471646,36472139,36472391,36472686,36473622,36473887,36479516,36481537,36482899	0.960000
spleen_female_adult_53_years	chr6	29947713	29947755	29947754	+	RAMPAGE_only	15	15	23	1.366178	3.629220	chr6	29946919	29948746	LTR|ERVL|ERV3-16A3_I-int	+	chr6	29942553	29953100	STRG.46011.13	+	29942553,29942756,29943267,29944121,29944499,29945058,29945233,29945450,29947963	29942626,29943026,29943543,29944397,29944616,29945091,29945281,29947825,29953100	0.608696
spleen_female_adult_53_years	chr7	6590257	6590300	6590257	+	High_confidence	7	7	27	1.603774	4.356558	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.962963
spleen_female_adult_53_years	chr2	88784865	88784891	88784865	+	RAMPAGE_only	11	11	21	1.247380	3.787144	chr2	88784858	88784980	DNA|hAT-Charlie|MER5A1	-	chr2	88782711	88805403	ANKRD36BP2|ENST00000575193.1	+	88782711,88782852,88784597,88784720,88786469,88786590,88788317,88788441,88792420,88797281,88801053,88802712,88804379,88804786,88805378	88782762,88782925,88784626,88784793,88786498,88786663,88788346,88788514,88792494,88797423,88801309,88802865,88804450,88804880,88805403	0.904762
spleen_female_adult_53_years	chr12	29751735	29751750	29751737	-	RAMPAGE_only	3	4	10	0.593990	2.641604	chr12	29751618	29751693	LINE|L2|L2b	-	chr12	29532567	29783046	TMTC1|ENST00000553189.5	-	29532567,29556856,29572104,29583406,29604177,29633146,29659879,29660803,29751665,29755708,29758703,29767897,29782809	29536317,29557000,29572218,29583574,29604299,29633336,29659983,29660885,29751872,29755885,29758777,29768075,29783046	0.900000
spleen_female_adult_53_years	chr11	62600186	62600242	62600186	-	High_confidence	8	8	21	1.247380	3.327340	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.571429
spleen_female_adult_53_years	chr11	44604417	44604422	44604417	+	High_confidence	10	11	17	1.009784	3.454822	chr11	44604327	44604536	SINE|MIR|MIRb	+	chr11	44604427	44619275	CD82|ENST00000530931.1	+	44604427,44605057,44605354,44615271,44618161,44618639,44619048	44604501,44605182,44605429,44615373,44618365,44618723,44619275	0.823529
spleen_female_adult_53_years	chr8	38850710	38850748	38850710	+	RAMPAGE_only	3	3	12	0.712788	2.751629	chr8	38850509	38850800	SINE|Alu|AluJb	+	chr8	38839283	38853028	TACC1|ENST00000519093.5	+	38839283,38842286,38843288,38846698,38847954	38840267,38842447,38843395,38846819,38853028	1.000000
spleen_female_adult_53_years	chr9	31334984	31334987	31334984	-	High_confidence	7	7	13	0.772187	3.238901	chr9	31334699	31335791	LTR|ERV1|MER52A	-	chr9	31233674	31335121	STRG.66642.1	-	31233674,31234444,31235293,31334656	31233840,31234553,31235419,31335121	0.692308
spleen_female_adult_53_years	chr9	121313981	121314021	121314002	+	RAMPAGE_only	15	15	57	3.385745	4.390104	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.982456
spleen_female_adult_53_years	chr2	227534916	227534933	227534932	+	RAMPAGE_only	9	9	15	0.890985	3.664498	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.666667
spleen_female_adult_53_years	chr3	37058875	37058887	37058886	-	RAMPAGE_only	8	8	14	0.831586	3.521641	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	1.000000
spleen_female_adult_53_years	chr8	65981113	65981120	65981113	+	RAMPAGE_only	6	7	18	1.069183	3.169249	chr8	65980910	65981286	LTR|ERVL-MaLR|THE1B	+	chr8	66021555	66100520	DNAJC5B|NM_033105.4	+	66021555,66043487,66051530,66076659,66080376,66099936	66021705,66043611,66051666,66076873,66080548,66100520	0.611111
spleen_female_adult_53_years	chr21	33448793	33448797	33448793	-	High_confidence	4	4	8	0.475192	2.500000	chr21	33448743	33448924	SINE|Alu|AluJo	+	chr21	33432484	33448964	TMEM50B|ENST00000484377.5	-	33432484,33436882,33439213,33448781	33432802,33436992,33439297,33448964	1.000000
spleen_female_adult_53_years	chr2	159428313	159428357	159428356	-	RAMPAGE_only	15	16	37	2.197764	4.397579	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.783784
spleen_female_adult_53_years	chr1	173415697	173415698	173415697	+	RAMPAGE_only	20	20	22	1.306779	3.784184	chr1	173415608	173415750	SINE|MIR|MIRb	+	chr1	173417658	173417942	STRG.8082.1	+	173417658	173417942	0.772727
spleen_female_adult_53_years	chr15	44662603	44662623	44662617	-	RAMPAGE_only	18	18	39	2.316562	4.371087	chr15	44662388	44662674	SINE|Alu|AluJb	+	chr15	44563120	44663647	SPG11|ENST00000427534.6	-	44563120,44567423,44569397,44570524,44572682,44573546,44574901,44583813,44585635,44589251,44592330,44595258,44596082,44596783,44598264,44598630,44600466,44606024,44608443,44610839,44613429,44615362,44620189,44621758,44622219,44622727,44626330,44628668,44629232,44633504,44648865,44651490,44652128,44657094,44659078,44660431,44663390	44563301,44567592,44569505,44570658,44572820,44573745,44575041,44584558,44585850,44589414,44592438,44595459,44596355,44596943,44598373,44598836,44600632,44606091,44608605,44610985,44613536,44615566,44620403,44621934,44622347,44622799,44626507,44628844,44629388,44633637,44649011,44651939,44652266,44657296,44659303,44660616,44663647	0.846154
spleen_female_adult_53_years	chr14	38881001	38881017	38881001	-	High_confidence	28	28	51	3.029351	5.243856	chr14	38880649	38881113	LTR|ERVL-MaLR|MLT1F2	-	chr14	38834948	38881067	STRG.93533.1	-	38834948,38835541,38880783	38835398,38839204,38881067	0.843137
spleen_female_adult_53_years	chr16	30187462	30187475	30187474	+	High_confidence	9	9	20	1.187981	3.984184	chr16	30187519	30187611	SINE|MIR|MIR3	+	chr16	30188074	30188572	CORO1A|ENST00000562129.1	+	30188074,30188360	30188249,30188572	0.500000
spleen_female_adult_53_years	chr2	72693353	72693354	72693353	-	RAMPAGE_only	53	55	70	4.157932	5.097675	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.800000
spleen_female_adult_53_years	chr5	55982731	55982758	55982757	-	High_confidence	3	3	7	0.415793	2.521641	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	1.000000
spleen_female_adult_53_years	chr4	153688003	153688004	153688003	+	RAMPAGE_only	6	6	7	0.415793	2.584963	chr4	153687920	153688176	LTR|ERV1|MER57A-int	+	chr4	153684279	153705378	STRG.36014.8	+	153684279,153702891	153702510,153705378	0.857143
spleen_female_adult_53_years	chr2	40453546	40453549	40453546	-	High_confidence	9	9	16	0.950385	3.189898	chr2	40453521	40453703	DNA|hAT-Charlie|MER5B	+	chr2	40430019	40453438	SLC8A1|ENST00000455476.5	-	40430019,40453160	40430304,40453438	0.875000
spleen_female_adult_53_years	chr1	17005390	17005391	17005390	-	High_confidence	4	4	7	0.415793	2.584963	chr1	17005163	17005347	SINE|MIR|MIR3	-	chr1	17000282	17005395	ATP13A2|ENST00000508222.5	-	17000282,17000399,17002033,17002295,17004331,17004706,17005013,17005373	17000312,17000507,17002103,17002373,17004411,17004821,17005072,17005395	0.714286
spleen_female_adult_53_years	chr1	21551266	21551273	21551266	+	High_confidence	5	5	13	0.772187	2.873141	chr1	21551216	21551436	LINE|L2|L2c	-	chr1	21551278	21578012	ALPL|ENST00000374832.5	+	21551278,21553977,21560625,21561096,21563109,21564040,21568103,21570304,21573664,21575732,21576521,21577382	21551428,21554142,21560745,21561212,21563284,21564216,21568247,21570374,21573799,21575924,21576641,21578012	0.923077
spleen_female_adult_53_years	chr2	203533404	203533440	203533429	-	High_confidence	16	19	43	2.554158	4.897081	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.790698
spleen_female_adult_53_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	62	62	68	4.039134	4.950849	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.602941
spleen_female_adult_53_years	chr7	43762629	43762670	43762659	+	RAMPAGE_only	33	33	132	7.840672	5.805622	chr7	43762606	43762916	SINE|Alu|AluSc	-	chr7	43758686	43807342	BLVRA|ENST00000402924.5	+	43758686,43760016,43771137,43787903,43791248,43792714,43800464,43803675,43806976	43758734,43760110,43771170,43788025,43791368,43792812,43800572,43803847,43807342	0.810606
spleen_female_adult_53_years	chr3	134485387	134485409	134485403	-	High_confidence	3	3	11	0.653389	3.095795	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	1.000000
spleen_female_adult_53_years	chr14	100066439	100066468	100066439	+	High_confidence	6	6	12	0.712788	3.418296	chr14	100066222	100066467	SINE|MIR|MIRc	-	chr14	100066436	100128581	EVL|ENST00000557153.5	+	100066436,100084686,100097480,100123538,100126706,100128518	100066487,100084855,100097658,100123602,100126771,100128581	0.666667
spleen_female_adult_53_years	chr12	6787003	6787005	6787003	+	High_confidence	6	9	10	0.593990	3.169925	chr12	6786967	6787079	DNA|hAT-Charlie|MER102c	-	chr12	6786857	6800445	CD4|ENST00000535707.5	+	6786857,6789488,6800071,6800306	6787005,6789662,6800187,6800445	0.700000
spleen_female_adult_53_years	chr17	75742748	75742759	75742748	+	High_confidence	12	12	31	1.841370	3.977917	chr17	75742779	75742995	SINE|MIR|MIRb	+	chr17	75742423	75749045	ITGB4|ENST00000584025.1	+	75742423,75743712,75746263,75748840	75742761,75743861,75746375,75749045	0.612903
spleen_female_adult_53_years	chr7	139719024	139719094	139719024	-	High_confidence	8	8	29	1.722572	4.180451	chr7	139718933	139719132	LINE|L2|L2	+	chr7	139572944	139720010	STRG.58457.3	-	139572944,139575127,139583816,139596716,139600416,139604080,139613201,139614285,139620400,139626600,139628952,139631164,139631601,139715931,139718849	139573397,139575288,139584064,139596998,139600596,139604223,139613323,139614412,139620563,139626785,139629039,139631284,139631725,139717015,139720010	0.931034
spleen_female_adult_53_years	chr5	42837185	42837186	42837185	+	High_confidence	80	80	80	4.751923	4.748426	chr5	42836194	42837646	LTR|ERV1|LTR12C	+	chr5	42837205	42837772	STRG.37888.1	+	42837205	42837772	0.987500
spleen_female_adult_53_years	chr4	152412488	152412529	152412528	-	High_confidence	23	23	47	2.791755	4.953213	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
spleen_female_adult_53_years	chr5	14572964	14572976	14572964	-	High_confidence	117	125	237	14.077571	5.831933	chr5	14572729	14573102	LTR|ERVL-MaLR|MLT1A0	-	chr5	14564472	14572984	STRG.37231.4	-	14564472	14572984	0.907173
spleen_female_adult_53_years	chr1	1721622	1721638	1721636	-	High_confidence	5	7	17	1.009784	3.750000	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.823529
spleen_female_adult_53_years	chr2	85777696	85777707	85777704	+	RAMPAGE_only	3	4	9	0.534591	2.750000	chr2	85777710	85777843	LINE|L2|L2c	+	chr2	85781033	85788039	ATOH8|ENST00000489682.1	+	85781033,85786884	85781166,85788039	0.666667
spleen_female_adult_53_years	chr19	46733415	46733461	46733415	-	High_confidence	3	3	14	0.831586	2.653544	chr19	46733275	46733512	LINE|L1|L1MC	+	chr19	46727906	46733449	STRN4|ENST00000594847.6	-	46727906,46728617,46730731,46733038	46728007,46728777,46730873,46733449	0.928571
spleen_female_adult_53_years	chr12	119181284	119181291	119181288	+	RAMPAGE_only	3	3	10	0.593990	2.947703	chr12	119181138	119181588	LTR|ERV1|MER4A1	-	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.900000
spleen_female_adult_53_years	chr11	102417085	102417086	102417085	-	RAMPAGE_only	7	7	10	0.593990	3.169925	chr11	102416215	102419177	LINE|L1|L1PA15	+	chr11	102398855	102451231	TMEM123|ENST00000528969.5	-	102398855,102401538,102401915,102448811,102451201	102398891,102401692,102402206,102448868,102451231	0.800000
spleen_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	64	65	65	3.860937	5.134624	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.753846
spleen_female_adult_53_years	chr16	70590328	70590335	70590328	+	RAMPAGE_only	29	29	68	4.039134	4.753830	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.911765
spleen_female_adult_53_years	chr11	14325268	14325278	14325277	-	RAMPAGE_only	10	10	29	1.722572	4.349192	chr11	14325155	14325289	SINE|MIR|MIR	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.758621
spleen_female_adult_53_years	chr11	68773414	68773415	68773414	-	RAMPAGE_only	9	9	10	0.593990	2.947703	chr11	68773373	68773449	LINE|CR1|L3	+	chr11	68754888	68808889	STRG.79278.3	-	68754888,68759568,68760224,68761534,68762626,68773264,68775315,68780639,68781770,68784814,68793314,68794803,68796855,68803999,68807466	68757730,68759661,68760338,68761687,68762761,68773429,68775432,68780745,68781959,68785010,68793402,68794911,68799355,68804101,68808889	0.800000
spleen_female_adult_53_years	chr6	169654660	169654723	169654687	-	RAMPAGE_only	3	3	19	1.128582	3.836592	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169558320	169667275	WDR27|ENST00000546525.5	-	169558320,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197,169651929,169658275,169659085,169659450,169660662,169662303,169663562,169664165,169665485,169667135	169559927,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649275,169652008,169658358,169659207,169659518,169660766,169662424,169663649,169664286,169665556,169667275	0.526316
spleen_female_adult_53_years	chr17	64393183	64393184	64393183	-	RAMPAGE_only	7	7	10	0.593990	2.947703	chr17	64392994	64393185	LTR|ERV1|MER51D	+	chr17	64319414	64390878	PECAM1|NM_000442.4	-	64319414,64329699,64341633,64348259,64350379,64352389,64353490,64354932,64356110,64360139,64363148,64369749,64375050,64377823,64390488,64390601	64323845,64329722,64341690,64348322,64350433,64352463,64353518,64355040,64356398,64360415,64363397,64370025,64375356,64378117,64390515,64390878	0.600000
spleen_female_adult_53_years	chr1	198519806	198519811	198519806	-	High_confidence	40	40	77	4.573726	5.526273	chr1	198519227	198519984	LINE|L2|L2	+	chr1	198518756	198519875	STRG.9051.1	-	198518756	198519875	0.909091
spleen_female_adult_53_years	chr6	2881635	2881668	2881635	-	High_confidence	44	44	93	5.524110	5.598890	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2851159	2881640	STRG.44507.1	-	2851159,2854309,2881499	2853196,2855690,2881640	0.602151
spleen_female_adult_53_years	chr1	89272819	89272883	89272859	-	High_confidence	266	277	2036	120.936431	6.644793	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.949902
spleen_female_adult_53_years	chr2	227534963	227535001	227534963	+	RAMPAGE_only	3	3	9	0.534591	2.500000	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.888889
spleen_female_adult_53_years	chrX	48683080	48683138	48683080	+	RAMPAGE_only	10	10	54	3.207548	4.952082	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48676595	48686871	WAS|ENST00000450772.5	+	48676595,48683267,48683819,48684282,48685546,48685733,48685945,48686080,48686780	48676748,48683363,48683985,48684423,48685633,48685836,48685987,48686134,48686871	0.740741
spleen_female_adult_53_years	chr14	85934606	85934616	85934606	+	High_confidence	4	4	8	0.475192	2.521641	chr14	85934517	85934812	LTR|ERV1|LTR12F	+	chr14	85934678	85936083	STRG.95844.1	+	85934678	85936083	0.750000
spleen_female_adult_53_years	chr2	201115966	201116008	201115966	+	High_confidence	4	4	18	1.069183	3.392147	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	1.000000
spleen_female_adult_53_years	chr4	158173013	158173025	158173024	-	High_confidence	90	93	133	7.900071	6.100429	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.857143
spleen_female_adult_53_years	chr7	101241496	101241533	101241513	-	RAMPAGE_only	22	30	118	7.009086	4.531853	chr7	101241231	101241489	SINE|Alu|AluSq2	-	chr7	101239731	101876880	STRG.56369.12	-	101239731,101240141,101240829,101241125,101876844	101239903,101240247,101240906,101241451,101876880	0.974576
spleen_female_adult_53_years	chr21	33931146	33931225	33931224	+	High_confidence	5	5	36	2.138365	3.905320	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.833333
spleen_female_adult_53_years	chr22	49932048	49932068	49932048	-	High_confidence	2	2	7	0.415793	2.521641	chr22	49931719	49932288	LTR|ERVL|ERV3-16A3_I-int	-	chr22	49930129	49931433	STRG.121325.1	-	49930129	49931433	1.000000
spleen_female_adult_53_years	chr7	45940637	45940682	45940659	+	RAMPAGE_only	12	12	75	4.454927	4.919741	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45969656	45980191	AC073115.2|ENST00000416708.1	+	45969656,45978349,45979908	45969809,45978468,45980191	0.586667
spleen_female_adult_53_years	chr7	139718953	139718972	139718971	-	RAMPAGE_only	14	14	25	1.484976	3.834963	chr7	139718933	139719132	LINE|L2|L2	+	chr7	139572944	139720010	STRG.58457.3	-	139572944,139575127,139583816,139596716,139600416,139604080,139613201,139614285,139620400,139626600,139628952,139631164,139631601,139715931,139718849	139573397,139575288,139584064,139596998,139600596,139604223,139613323,139614412,139620563,139626785,139629039,139631284,139631725,139717015,139720010	0.920000
spleen_female_adult_53_years	chr8	65979196	65979229	65979196	+	RAMPAGE_only	23	26	39	2.316562	4.580023	chr8	65979005	65979377	LTR|ERVL-MaLR|THE1B	+	chr8	66021555	66100520	DNAJC5B|NM_033105.4	+	66021555,66043487,66051530,66076659,66080376,66099936	66021705,66043611,66051666,66076873,66080548,66100520	0.846154
spleen_female_adult_53_years	chr5	151687244	151687251	151687244	-	High_confidence	5	5	9	0.534591	2.947703	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151662487	151687242	STRG.43135.1	-	151662487,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687242	0.888889
spleen_female_adult_53_years	chr19	9140393	9140428	9140427	+	High_confidence	45	45	150	8.909855	5.799663	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.700000
spleen_female_adult_53_years	chr11	111097312	111097352	111097312	-	High_confidence	3	4	19	1.128582	3.392147	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.947368
spleen_female_adult_53_years	chr8	87044429	87044446	87044445	+	RAMPAGE_only	5	5	17	1.009784	3.875000	chr8	87044391	87044993	LTR|ERV1|MER61F	-	chr8	87205993	87353876	CNBD1|ENST00000620844.1	+	87205993,87236918,87284677,87286538,87351684,87353635,87353871	87206138,87237112,87284815,87286671,87351794,87353786,87353876	0.588235
spleen_female_adult_53_years	chr3	187021850	187021852	187021850	+	High_confidence	192	354	482	28.630334	6.278794	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.846473
spleen_female_adult_53_years	chr1	12356414	12356415	12356414	+	High_confidence	15	16	18	1.069183	3.101881	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12356350	12510346	VPS13D|ENST00000646411.1	+	12356350,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12356524,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	0.833333
spleen_female_adult_53_years	chr12	26832748	26832801	26832779	-	High_confidence	6	8	28	1.663173	4.286790	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.857143
spleen_female_adult_53_years	chr6	37013410	37013461	37013410	+	High_confidence	24	24	45	2.672956	4.230278	chr6	37013335	37013470	LINE|L2|L2b	-	chr6	37013501	37028546	FGD2|ENST00000493635.1	+	37013501,37014390,37014891,37015799,37020540,37020708,37021511,37022238,37027428,37027947	37014100,37014704,37015038,37015860,37020620,37020739,37021604,37025938,37027575,37028546	0.977778
spleen_female_adult_53_years	chr7	149551783	149551784	149551783	-	RAMPAGE_only	7	7	10	0.593990	3.121928	chr7	149551663	149551773	LTR|ERVL-MaLR|MLT1M	-	chr7	149547153	149559375	STRG.58971.8	-	149547153,149550867	149549374,149559375	1.000000
spleen_female_adult_53_years	chr10	102727663	102727715	102727696	+	RAMPAGE_only	5	5	28	1.663173	4.182006	chr10	102727660	102728003	LINE|L2|L2c	-	chr10	102714540	102739189	SFXN2|NM_178858.4	+	102714540,102726611,102726986,102728430,102729318,102729722,102731722,102732151,102732858,102733553,102735861,102737662	102714681,102726797,102727157,102728529,102729394,102729808,102731783,102732218,102732908,102733603,102735909,102739189	0.535714
spleen_female_adult_53_years	chr19	58312242	58312243	58312242	+	RAMPAGE_only	10	10	10	0.593990	2.646439	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.800000
spleen_female_adult_53_years	chr11	57092284	57092320	57092319	-	High_confidence	4	4	11	0.653389	3.277613	chr11	57091950	57092364	LINE|L1|L1PA10	-	chr11	56782335	57092236	STRG.78294.1	-	56782335,56797403,56798634,56823661,56975082,57005728,57029060,57091973	56785057,56797516,56798722,56823781,57002624,57015348,57045344,57092236	0.727273
spleen_female_adult_53_years	chr6	119491290	119491311	119491301	-	High_confidence	83	96	277	16.453532	6.214752	chr6	119489191	119492975	LINE|L1|L1PB1	+	chr6	119452257	119491304	STRG.49944.2	-	119452257,119456109,119456917	119455193,119456375,119491304	0.978339
spleen_female_adult_53_years	chr11	90251204	90251205	90251204	+	RAMPAGE_only	37	47	51	3.029351	5.280268	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90489309	90863696	DISC1FP1|ENST00000562678.5	+	90489309,90546753,90801765,90844879,90852615,90863352	90489352,90546895,90801862,90844957,90852707,90863696	0.509804
spleen_female_adult_53_years	chr4	48012914	48012945	48012935	-	High_confidence	10	12	57	3.385745	5.495628	chr4	48012591	48013262	LTR|ERV1|MER4-int	-	chr4	47935976	48012944	CNGA1|NM_000087.3	-	47935976,47940762,47942040,47943180,47943370,47949832,47951352,47952582,47981392,48010793,48012888	47937829,47940869,47942148,47943288,47943412,47949895,47951469,47952703,47981500,48010893,48012944	0.719298
spleen_female_adult_53_years	chr3	44439948	44439949	44439948	-	High_confidence	7	7	8	0.475192	2.807355	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421141	44439946	C3orf86|ENST00000637612.1	-	44421141,44428930,44437697,44439796	44421813,44429097,44437767,44439946	0.500000
spleen_female_adult_53_years	chr11	118241594	118241617	118241616	-	RAMPAGE_only	2	2	10	0.593990	3.169925	chr11	118241373	118241624	SINE|MIR|MIR	+	chr11	118229237	118252347	MPZL3|ENST00000527472.1	-	118229237,118233459,118235423,118237049,118240210,118252221	118229920,118233523,118235589,118237260,118240341,118252347	0.500000
spleen_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	609	710	1146	68.071291	5.566078	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.984293
spleen_female_adult_53_years	chr19	19668150	19668174	19668173	+	High_confidence	5	5	17	1.009784	3.750000	chr19	19668164	19668579	LTR|ERV1|LTR21B	-	chr19	19668152	19683506	ZNF101|NM_001300949.1	+	19668152,19677863,19678725,19679180	19668207,19677986,19678786,19683506	0.882353
spleen_female_adult_53_years	chr19	3047811	3047824	3047811	-	High_confidence	2	3	6	0.356394	2.584963	chr19	3047758	3047946	LINE|L2|L2a	+	chr19	2997637	3047635	TLE2|NM_001144761.1	-	2997637,3002352,3005436,3005720,3006419,3008868,3009541,3011021,3013668,3014569,3015652,3017839,3019282,3019698,3025019,3027828,3028318,3028705,3045725,3047562	2997955,3002503,3005584,3005968,3006669,3008945,3009702,3011160,3013818,3014614,3015760,3017859,3019466,3019773,3025082,3027873,3028382,3028803,3045799,3047635	0.500000
spleen_female_adult_53_years	chr1	161517944	161517952	161517951	+	RAMPAGE_only	5	5	10	0.593990	2.725481	chr1	161517820	161518039	LTR|ERV1|MER57-int	+	chr1	161514619	161518603	FCGR2A|ENST00000486608.1	+	161514619,161517974	161514874,161518603	0.800000
spleen_female_adult_53_years	chr20	34369398	34369440	34369398	+	RAMPAGE_only	5	5	17	1.009784	3.125000	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.941176
spleen_female_adult_53_years	chr15	57281628	57281654	57281628	+	High_confidence	8	11	29	1.722572	4.164498	chr15	57281447	57281985	DNA|hAT-Charlie|MER1A	+	chr15	57281646	57286420	TCF12|ENST00000561454.1	+	57281646,57282444,57286156	57281792,57282598,57286420	0.931034
spleen_female_adult_53_years	chr15	57300338	57300344	57300338	+	High_confidence	260	264	692	41.104131	6.150221	chr15	57300291	57300572	SINE|Alu|AluSg	-	chr15	57300364	57307761	STRG.99002.16	+	57300364,57307541	57307068,57307761	0.989884
spleen_female_adult_53_years	chr12	100410606	100410618	100410617	+	High_confidence	4	4	10	0.593990	2.947703	chr12	100410510	100410676	SINE|Alu|AluSx1	+	chr12	100410620	100420089	SLC17A8|ENST00000552697.1	+	100410620,100412769,100418028,100419814	100410699,100412880,100418156,100420089	0.500000
spleen_female_adult_53_years	chr17	64342049	64342060	64342054	-	RAMPAGE_only	8	9	33	1.960168	4.663910	chr17	64341867	64342175	SINE|Alu|AluSz	+	chr17	64319414	64390878	PECAM1|NM_000442.4	-	64319414,64329699,64341633,64348259,64350379,64352389,64353490,64354932,64356110,64360139,64363148,64369749,64375050,64377823,64390488,64390601	64323845,64329722,64341690,64348322,64350433,64352463,64353518,64355040,64356398,64360415,64363397,64370025,64375356,64378117,64390515,64390878	0.818182
spleen_female_adult_53_years	chr1	108939644	108939645	108939644	-	RAMPAGE_only	10	10	12	0.712788	2.845351	chr1	108939309	108939608	SINE|Alu|AluY	-	chr1	108929507	108950448	CLCC1|NM_001278202.1	-	108929507,108934624,108937076,108939635,108940044,108941404,108947610,108949819,108950308	108932501,108934942,108937418,108939782,108940142,108941498,108947718,108949921,108950448	0.916667
spleen_female_adult_53_years	chr1	32901895	32901902	32901895	-	High_confidence	4	5	8	0.475192	2.750000	chr1	32901892	32901988	SINE|MIR|MIRb	+	chr1	32894594	32901358	TMEM54|ENST00000373463.7	-	32894594,32895304,32895554,32895909,32898125,32901222	32894879,32895439,32895743,32895969,32898319,32901358	1.000000
spleen_female_adult_53_years	chr4	152100757	152100800	152100789	+	High_confidence	2	2	13	0.772187	3.418296	chr4	152100450	152100876	LTR|ERVL|LTR16	-	chr4	152100817	152104720	LOC100996286|NR_121627.1	+	152100817,152101483,152103626	152101218,152101580,152104720	0.923077
spleen_female_adult_53_years	chr3	135516281	135516344	135516281	-	High_confidence	3	4	16	0.950385	3.506891	chr3	135516138	135516365	LINE|CR1|X7C_LINE	+	chr3	135456293	135516391	STRG.27826.1	-	135456293,135491239,135491562,135493257,135496268,135516149	135458718,135491332,135491803,135493295,135496495,135516391	0.625000
spleen_female_adult_53_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	44	46	125	7.424879	5.730521	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.728000
spleen_female_adult_53_years	chr9	39809858	39809876	39809864	-	High_confidence	5	5	16	0.950385	3.750000	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807694	39810013	STRG.67194.4	-	39807694	39810013	0.562500
spleen_female_adult_53_years	chr9	39810023	39810034	39810033	-	High_confidence	39	39	66	3.920336	4.898004	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	STRG.67194.4	-	39807694	39810013	0.772727
spleen_female_adult_53_years	chr11	16749609	16749610	16749609	+	High_confidence	11	11	12	0.712788	3.277613	chr11	16749466	16751217	DNA|hAT-Charlie|Charlie3	+	chr11	16749113	16755347	C11orf58|ENST00000531658.1	+	16749113,16754870	16752894,16755347	0.916667
spleen_female_adult_53_years	chr3	72100358	72100422	72100421	-	High_confidence	11	12	21	1.247380	4.037401	chr3	72100285	72100568	DNA|hAT-Charlie|MER102b	-	chr3	72035299	72100427	LINC00877|ENST00000468646.6	-	72035299,72055860,72059686,72060509,72060802,72099903,72100168	72036520,72055962,72060109,72060611,72061094,72100010,72100427	0.666667
spleen_female_adult_53_years	chr16	2759908	2760018	2759989	+	High_confidence	9	9	60	3.563942	4.171052	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	0.950000
spleen_female_adult_53_years	chr10	60728066	60728106	60728098	-	High_confidence	2	3	10	0.593990	2.947703	chr10	60727998	60728149	DNA|hAT-Blackjack|MER63B	+	chr10	60508084	60728824	STRG.73468.15	-	60508084,60615185,60714257	60508625,60615224,60728824	0.500000
spleen_female_adult_53_years	chr5	32403115	32403167	32403115	-	RAMPAGE_only	8	8	25	1.484976	3.938722	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32394542	32417356	STRG.37484.5	-	32394542,32397218,32400006,32403105,32414968	32395304,32397338,32400203,32407021,32417356	0.960000
spleen_female_adult_53_years	chr12	31804982	31804983	31804982	-	High_confidence	407	407	422	25.066392	5.697478	chr12	31804677	31806355	LTR|ERV1|LTR12C	-	chr12	31801018	31805605	STRG.84567.1	-	31801018,31804674	31802163,31805605	0.850711
spleen_female_adult_53_years	chr6	166939085	166939099	166939085	-	RAMPAGE_only	3	3	8	0.475192	2.500000	chr6	166939051	166939339	SINE|Alu|AluSq2	+	chr6	166938574	166956589	RNASET2|ENST00000611959.1	-	166938574,166938611,166938655,166943767,166946681,166948569,166952487,166956096	166938610,166938653,166938991,166943809,166946739,166948625,166952548,166956589	0.625000
spleen_female_adult_53_years	chr6	13261082	13261104	13261103	+	RAMPAGE_only	5	5	11	0.653389	2.721928	chr6	13260907	13261111	DNA|hAT-Charlie|MER20	-	chr6	13272211	13286197	PHACTR1|ENST00000489548.1	+	13272211,13272859,13278267,13283421,13286145	13272468,13272915,13278329,13283562,13286197	0.636364
spleen_female_adult_53_years	chr20	33624688	33624702	33624701	+	RAMPAGE_only	4	4	8	0.475192	2.521641	chr20	33624662	33624719	LINE|L2|L2b	+	chr20	33619564	33636662	CBFA2T2|ENST00000491618.1	+	33619564,33623114,33623772,33624763,33628349,33629718,33636639	33619606,33623296,33623854,33625017,33628435,33629914,33636662	0.750000
spleen_female_adult_53_years	chr2	6918647	6918680	6918679	-	High_confidence	55	55	138	8.197067	5.987104	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.833333
spleen_female_adult_53_years	chr22	32580225	32580236	32580235	+	High_confidence	5	5	11	0.653389	2.921928	chr22	32580275	32580613	DNA|TcMar-Tigger|MER44A	+	chr22	32580168	32584174	STRG.120659.1	+	32580168,32583876	32580350,32584174	0.909091
spleen_female_adult_53_years	chr1	39310301	39310347	39310301	+	RAMPAGE_only	4	4	18	1.069183	3.454822	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.888889
spleen_female_adult_53_years	chr11	65429787	65430193	65429860	+	RAMPAGE_only	65	72	482	28.630334	6.288026	chr11	65429592	65429862	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
spleen_female_adult_53_years	chr2	96256922	96256923	96256922	-	RAMPAGE_only	42	42	52	3.088750	4.913393	chr2	96256725	96256974	LINE|L1|HAL1	+	chr2	96253799	96260595	TMEM127|ENST00000435268.1	-	96253799,96254832,96260494	96254115,96254997,96260595	0.634615
spleen_female_adult_53_years	chr2	196176330	196176332	196176331	-	High_confidence	254	385	485	28.808531	6.337590	chr2	196176299	196176378	LINE|RTE-BovB|MamRTE1	-	chr2	196156571	196176327	STK17B|ENST00000420683.1	-	196156571,196163261,196174248,196176225	196156651,196163427,196174407,196176327	0.802062
spleen_female_adult_53_years	chr19	39335655	39335673	39335672	-	High_confidence	6	6	11	0.653389	2.921928	chr19	39335628	39335746	DNA|hAT-Tip100|MER91A	-	chr19	39328358	39335531	GMFG|ENST00000596583.5	-	39328358,39328999,39329547,39333076,39335434	39328548,39329073,39329626,39333126,39335531	0.818182
spleen_female_adult_53_years	chr8	24387769	24387779	24387778	-	High_confidence	3	3	8	0.475192	3.000000	chr8	24386908	24387825	LTR|ERVK|HERVK22-int	-	chr8	24295813	24387515	AC120193.1|ENST00000518988.5	-	24295813,24296153,24300884,24387160	24296057,24296250,24300929,24387515	0.875000
spleen_female_adult_53_years	chr2	86826129	86826131	86826129	-	High_confidence	35	44	59	3.504543	4.149360	chr2	86826118	86826191	SINE|MIR|MIR1_Amn	+	chr2	86815165	86826195	STRG.15700.1	-	86815165,86825952	86815718,86826195	0.864407
spleen_female_adult_53_years	chr12	51302234	51302235	51302234	-	RAMPAGE_only	18	20	20	1.187981	3.646439	chr12	51302187	51302333	LINE|L2|L2c	-	chr12	51281037	51324115	BIN2|ENST00000604560.5	-	51281037,51284715,51291590,51295795,51297088,51299202,51299606,51302019,51302685,51303086,51324021	51281528,51284780,51292344,51295878,51297164,51299288,51299714,51302115,51302780,51303141,51324115	0.750000
spleen_female_adult_53_years	chr19	51350356	51350369	51350368	-	RAMPAGE_only	3	3	8	0.475192	2.500000	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
spleen_female_adult_53_years	chr22	44181183	44181184	44181183	+	High_confidence	8	9	12	0.712788	3.251629	chr22	44181132	44181213	LINE|L2|L2a	-	chr22	44181335	44206622	PARVG|ENST00000475485.6	+	44181335,44181741,44183317,44185807,44186576,44189113,44190550,44192048,44196156,44196346,44198620,44205756,44206316	44181370,44181917,44183408,44185872,44187878,44189254,44190666,44192129,44196213,44196415,44198722,44205829,44206622	0.833333
spleen_female_adult_53_years	chr12	126772336	126772360	126772336	-	High_confidence	30	32	62	3.682740	4.289002	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126748055	126772356	LINC00944|ENST00000542248.5	-	126748055,126760931,126763414,126772078	126748127,126761045,126763498,126772356	0.903226
spleen_female_adult_53_years	chr17	78632016	78632048	78632016	-	High_confidence	9	9	21	1.247380	4.037401	chr17	78632006	78632221	DNA|hAT-Charlie|MER1A	+	chr17	78617376	78632011	LINC02081|ENST00000590023.6	-	78617376,78621666,78624191,78630031,78631989	78617626,78621733,78624315,78630430,78632011	0.714286
spleen_female_adult_53_years	chr20	24930639	24930692	24930691	+	High_confidence	12	12	42	2.494759	4.521955	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930656	24931815	STRG.116175.1	+	24930656,24931346	24930774,24931815	0.714286
spleen_female_adult_53_years	chr19	571748	571771	571748	-	High_confidence	2	2	10	0.593990	2.947703	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.900000
spleen_female_adult_53_years	chr5	180909572	180909577	180909572	+	High_confidence	68	73	110	6.533894	5.773350	chr5	180909597	180909731	SINE|Alu|FLAM_C	+	chr5	180909572	180948353	BTNL8|ENST00000514448.5	+	180909572,180911338,180947511	180909697,180911614,180948353	0.663636
spleen_female_adult_53_years	chr2	218389627	218389635	218389627	+	RAMPAGE_only	3	4	7	0.415793	2.521641	chr2	218389568	218389639	LINE|L2|L2b	-	chr2	218382272	218392635	SLC11A1|ENST00000494322.5	+	218382272,218382959,218384242,218385146,218386634,218387159,218387564,218387799,218389869,218391197,218391375,218392114	218382375,218383102,218384365,218385266,218386741,218387230,218387632,218387955,218390028,218391287,218391495,218392635	0.857143
spleen_female_adult_53_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	16	16	16	0.950385	3.750000	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
spleen_female_adult_53_years	chr3	46463622	46463654	46463653	-	High_confidence	12	14	46	2.732356	4.897300	chr3	46463529	46463617	LTR|Gypsy|MamGypsy2-LTR	-	chr3	46436004	46463671	LTF|NM_001199149.1	-	46436004,46437939,46439295,46441415,46443440,46445280,46446439,46447307,46448862,46449853,46450494,46454304,46455294,46455795,46456289,46459655,46463443	46436229,46438129,46439480,46441483,46443582,46445436,46446493,46447398,46449017,46450028,46450673,46454360,46455442,46455978,46456398,46459819,46463671	0.934783
spleen_female_adult_53_years	chr1	174874418	174874441	174874418	+	High_confidence	19	21	108	6.415096	6.178363	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.592593
spleen_female_adult_53_years	chr11	100715407	100715410	100715407	+	RAMPAGE_only	8	8	14	0.831586	3.546594	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100738442	100913524	ARHGAP42|ENST00000534060.5	+	100738442,100770342,100795104,100816714,100859553,100913451	100738498,100770438,100795166,100816856,100859625,100913524	0.642857
spleen_female_adult_53_years	chr1	222737874	222737875	222737874	+	High_confidence	9	9	12	0.712788	3.095795	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.750000
spleen_female_adult_53_years	chr19	7642282	7642316	7642315	+	High_confidence	6	11	33	1.960168	4.328950	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.848485
spleen_female_adult_53_years	chr12	47307875	47307919	47307875	-	High_confidence	2	2	8	0.475192	3.000000	chr12	47307510	47309686	LINE|L1|L1M1	+	chr12	47306147	47307715	STRG.85159.1	-	47306147	47307715	1.000000
spleen_female_adult_53_years	chr9	68975842	68975855	68975854	-	RAMPAGE_only	12	12	50	2.969952	4.936641	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68972234	68972545	STRG.67833.1	-	68972234	68972545	0.520000
spleen_female_adult_53_years	chr3	139344518	139344548	139344547	+	High_confidence	17	18	37	2.197764	4.514718	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.756757
spleen_female_adult_53_years	chr1	6487913	6487914	6487913	-	RAMPAGE_only	8	8	11	0.653389	3.121928	chr1	6487489	6487914	LINE|L2|L2a	+	chr1	6466091	6485954	PLEKHG5|NM_001042665.1	-	6466091,6467824,6469041,6469334,6469543,6470235,6470505,6470734,6470989,6471487,6471757,6472526,6472985,6473250,6474012,6474450,6475046,6475461,6475930,6477528,6485835	6467572,6468586,6469241,6469450,6469676,6470355,6470643,6470884,6471100,6471637,6471808,6472622,6473174,6473454,6474164,6474587,6475138,6475522,6476036,6477658,6485954	0.909091
spleen_female_adult_53_years	chr20	44968211	44968226	44968211	+	RAMPAGE_only	4	4	9	0.534591	2.500000	chr20	44968139	44968436	SINE|Alu|AluSc8	-	chr20	44966552	45075488	STRG.117060.13	+	44966552,44972077,44974099,44978442,44981828,44987131,44995089,44997168,45000391,45001166,45024972,45075017	44966603,44973433,44975410,44978571,44981943,44987296,44995257,44997306,45000520,45001353,45025130,45075488	0.888889
spleen_female_adult_53_years	chr2	70019050	70019065	70019059	-	High_confidence	4	5	12	0.712788	3.418296	chr2	70018191	70020062	LINE|L1|L1MA8	+	chr2	69988740	70019188	PCBP1-AS1|ENST00000626769.2	-	69988740,69996685,70015447,70018014,70019137	69988838,69996888,70015580,70018131,70019188	0.500000
spleen_female_adult_53_years	chr18	2589112	2589121	2589120	+	RAMPAGE_only	7	7	13	0.772187	3.418296	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	0.923077
spleen_female_adult_53_years	chr7	131108707	131108708	131108707	-	RAMPAGE_only	86	86	89	5.286514	5.394045	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944159	131109916	LINC-PINT|NR_109854.1	-	130944159,130945719,130984052,131052424,131107719,131109736	130944889,130945791,130984109,131052555,131108803,131109916	0.966292
spleen_female_adult_53_years	chr8	129970956	129970966	129970965	-	High_confidence	5	5	11	0.653389	2.721928	chr8	129970879	129971079	SINE|MIR|MIR	+	chr8	129855582	129970990	FAM49B|ENST00000519142.5	-	129855582,129862228,129871374,129879388,129903311,129904498,129912469,129970942	129855747,129862334,129871496,129879471,129903350,129904585,129912515,129970990	0.545455
spleen_female_adult_53_years	chr13	37091090	37091122	37091121	+	High_confidence	361	373	847	50.310981	7.309274	chr13	37090806	37091149	DNA|hAT-Charlie|Charlie17b	+	chr13	37091076	37164506	STRG.90265.1	+	37091076,37104580,37158523	37091148,37158448,37164506	0.844156
spleen_female_adult_53_years	chr8	101202440	101202449	101202448	-	High_confidence	5	5	9	0.534591	2.725481	chr8	101202158	101202485	SINE|Alu|AluSg7	+	chr8	101198936	101201657	ZNF706|ENST00000519103.1	-	101198936,101199989,101201606	101199239,101200123,101201657	1.000000
spleen_female_adult_53_years	chr5	173787888	173787900	173787888	-	High_confidence	4	4	10	0.593990	2.721928	chr5	173787769	173787960	SINE|MIR|MIRb	+	chr5	173786789	173788413	LINC01485|ENST00000520324.5	-	173786789,173787688,173788362	173787247,173787745,173788413	1.000000
spleen_female_adult_53_years	chr20	48359906	48359925	48359906	+	High_confidence	9	10	46	2.732356	3.333908	chr20	48359855	48360168	LINE|L2|L2b	+	chr20	48359910	48370638	LINC00494|NR_026958.1	+	48359910,48364888,48366473,48366735,48368079	48360150,48365197,48366633,48367059,48370638	0.869565
spleen_female_adult_53_years	chr16	74485827	74485828	74485827	-	RAMPAGE_only	7	7	10	0.593990	2.725481	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	0.900000
spleen_female_adult_53_years	chr14	102083041	102083106	102083090	-	RAMPAGE_only	3	3	10	0.593990	2.846439	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	1.000000
spleen_female_adult_53_years	chr3	48479458	48479459	48479458	-	High_confidence	7	7	8	0.475192	2.807355	chr3	48479425	48479570	LINE|L1|L1M4	+	chr3	48469359	48479559	SHISA5|ENST00000486344.5	-	48469359,48469727,48479176	48469573,48469843,48479559	0.750000
spleen_female_adult_53_years	chr15	65300634	65300635	65300634	-	High_confidence	72	74	76	4.514326	4.888249	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65300183	65300622	STRG.99658.1	-	65300183	65300622	0.828947
spleen_female_adult_53_years	chr12	9674470	9674491	9674490	+	High_confidence	6	6	11	0.653389	2.921928	chr12	9672445	9674544	LINE|L1|L1PA10	-	chr12	9674007	9693336	CLEC2D|ENST00000476198.2	+	9674007,9680922,9687901,9692827,9693033	9674210,9681033,9688161,9692931,9693336	0.727273
spleen_female_adult_53_years	chr9	124505476	124505513	124505506	-	RAMPAGE_only	27	28	71	4.217331	4.706628	chr9	124505450	124505579	SINE|MIR|MIRb	+	chr9	124481250	124507235	STRG.70292.1	-	124481250,124491080,124493029,124500089,124503078,124503293,124504942,124506049	124483005,124491228,124493149,124500715,124503220,124503410,124505952,124507235	0.971831
spleen_female_adult_53_years	chr1	75376268	75376281	75376268	-	RAMPAGE_only	3	3	7	0.415793	2.521641	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.714286
spleen_female_adult_53_years	chr3	112498013	112498050	112498022	-	RAMPAGE_only	9	9	25	1.484976	4.293661	chr3	112498003	112498161	SINE|tRNA-RTE|MamSINE1	+	chr3	112466107	112499358	BTLA|ENST00000383680.4	-	112466107,112469757,112479454,112499270	112466383,112469804,112479769,112499358	0.680000
spleen_female_adult_53_years	chrX	107156231	107156259	107156258	-	RAMPAGE_only	3	3	7	0.415793	2.521641	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.571429
spleen_female_adult_53_years	chr6	88442895	88442928	88442927	-	High_confidence	49	66	134	7.959470	6.150674	chr6	88442599	88443120	LTR|ERVL-MaLR|MLT1F	-	chr6	88320389	88442929	STRG.48530.4	-	88320389,88442083,88442677	88324145,88442326,88442929	0.805970
spleen_female_adult_53_years	chr12	643625	643636	643635	-	High_confidence	14	14	37	2.197764	4.183014	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.513514
spleen_female_adult_53_years	chr21	38229925	38229928	38229927	+	High_confidence	13	17	25	1.484976	4.229871	chr21	38229909	38234139	LINE|L1|L1MB8	-	chr21	38229914	38301826	KCNJ15|NM_001276438.1	+	38229914,38296925,38299243	38230023,38297023,38301826	0.520000
spleen_female_adult_53_years	chr17	76481914	76481948	76481947	-	High_confidence	5	6	24	1.425577	3.823068	chr17	76481672	76481952	SINE|Alu|AluSc8	+	chr17	76479785	76481894	RHBDF2|ENST00000591879.1	-	76479785,76481374	76479854,76481894	0.916667
spleen_female_adult_53_years	chr19	3062922	3062978	3062922	-	High_confidence	17	18	80	4.751923	4.923292	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.987500
spleen_female_adult_53_years	chr2	185425062	185425076	185425075	+	High_confidence	5	6	14	0.831586	3.521641	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185425013	185483108	STRG.19396.1	+	185425013,185434096,185483033	185425507,185434191,185483108	0.857143
spleen_female_adult_53_years	chr19	9700673	9700674	9700673	-	High_confidence	48	51	53	3.148149	3.853155	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.924528
spleen_female_adult_53_years	chr14	22909560	22909561	22909560	-	RAMPAGE_only	7	7	8	0.475192	2.807355	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22905093	22905953	RBM23|ENST00000553738.5	-	22905093,22905335,22905605	22905246,22905453,22905953	0.500000
spleen_female_adult_53_years	chr11	73270048	73270091	73270090	+	High_confidence	14	14	51	3.029351	5.023025	chr11	73270078	73270271	SINE|MIR|MIRc	-	chr11	73269893	73297805	P2RY6|ENST00000393591.5	+	73269893,73272306,73295729,73296484	73270155,73272466,73295815,73297805	0.901961
spleen_female_adult_53_years	chr1	54413473	54413493	54413492	-	RAMPAGE_only	4	4	12	0.712788	2.913977	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54226631	54406419	SSBP3|ENST00000371320.7	-	54226631,54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54257126,54258068,54281437,54401860,54404575,54404857,54405952	54227160,54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257186,54258149,54281527,54401945,54404637,54404930,54406419	0.500000
spleen_female_adult_53_years	chr6	118651542	118651602	118651592	-	High_confidence	55	56	240	14.255768	6.425643	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.975000
spleen_female_adult_53_years	chr13	30376944	30376965	30376953	-	High_confidence	18	20	82	4.870721	4.936097	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30374002	30376964	LINC00426|ENST00000416261.1	-	30374002,30375466,30376826	30374093,30375776,30376964	0.573171
spleen_female_adult_53_years	chr2	11201313	11201337	11201336	-	RAMPAGE_only	2	3	11	0.653389	2.921928	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.909091
spleen_female_adult_53_years	chr5	50443311	50443324	50443318	-	High_confidence	35	35	89	5.286514	5.978378	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.640449
spleen_female_adult_53_years	chrX	53220882	53220905	53220904	-	RAMPAGE_only	4	4	11	0.653389	2.732159	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	0.818182
spleen_female_adult_53_years	chr5	72926306	72926307	72926306	+	High_confidence	15	15	15	0.890985	3.323231	chr5	72925316	72926709	LTR|ERV1|LTR12C	+	chr5	72926544	72926866	STRG.38874.1	+	72926544	72926866	0.933333
spleen_female_adult_53_years	chr7	29134219	29134258	29134219	-	RAMPAGE_only	7	7	42	2.494759	4.851335	chr7	29133633	29134827	LINE|L1|HAL1	+	chr7	28995630	29146497	CPVL|ENST00000396276.7	-	28995630,29030576,29064060,29066022,29071772,29072300,29086483,29092622,29095083,29096102,29112703,29120892,29146340	28995882,29030759,29064234,29066121,29071904,29072423,29086550,29092702,29095142,29096217,29112822,29121071,29146497	0.738095
spleen_female_adult_53_years	chr1	207069320	207069321	207069320	+	RAMPAGE_only	4	4	6	0.356394	2.584963	chr1	207069286	207069328	SINE|MIR|MIRb	+	chr1	207053274	207077817	PFKFB2|NM_006212.2	+	207053274,207054700,207061952,207062619,207063142,207063346,207063772,207065035,207067498,207068162,207069423,207070279,207071187,207071508,207072203	207053366,207054802,207062078,207062716,207063209,207063421,207063829,207065160,207067706,207068309,207069528,207070409,207071250,207071573,207077817	0.500000
spleen_female_adult_53_years	chr1	40041478	40041487	40041478	+	High_confidence	6	6	12	0.712788	3.277613	chr1	40041503	40041638	SINE|MIR|MIRc	+	chr1	40040779	40066295	CAP1|ENST00000424977.1	+	40040779,40041428,40059336,40060066,40061734,40064226,40064473,40066214	40040801,40041493,40059458,40060170,40061812,40064370,40064559,40066295	0.666667
spleen_female_adult_53_years	chr10	77498958	77498961	77498960	-	High_confidence	17	33	47	2.791755	4.838567	chr10	77498859	77499086	SINE|MIR|MIR	+	chr10	77249430	77498970	KCNMA1|ENST00000639282.1	-	77249430,77403861,77493797,77498583	77251256,77404023,77493929,77498970	0.765957
spleen_female_adult_53_years	chrX	20204049	20204079	20204049	-	RAMPAGE_only	7	7	13	0.772187	3.392747	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	1.000000
spleen_female_adult_53_years	chr19	41545191	41545192	41545191	+	RAMPAGE_only	600	605	616	36.589804	7.408905	chr19	41544577	41545607	LTR|ERVK|LTR5A	+	chr19	41549519	41586840	STRG.113641.1	+	41549519,41551179,41555209,41564681,41577199,41579269,41584349,41585442,41585839,41586153,41586463	41549552,41555099,41556085,41565056,41577559,41579628,41584443,41585495,41585871,41586195,41586840	0.503247
spleen_female_adult_53_years	chr2	73640722	73640773	73640722	+	High_confidence	143	147	218	12.948989	5.925169	chr2	73640769	73640932	LTR|ERVL-MaLR|MLT1J2	+	chr2	73640658	73695122	STRG.15201.10	+	73640658,73671029,73672308,73672807,73673812,73674841,73684960,73693803	73641325,73671150,73672495,73673050,73673996,73674905,73685086,73695122	0.967890
spleen_female_adult_53_years	chr19	49516089	49516090	49516089	+	RAMPAGE_only	5	6	8	0.475192	2.521641	chr19	49516011	49516134	LINE|L2|L2a	-	chr19	49513917	49526329	STRG.114385.10	+	49513917,49514210,49524506,49526009	49514133,49514486,49525573,49526329	0.750000
spleen_female_adult_53_years	chr6	16493291	16493292	16493291	-	RAMPAGE_only	8	8	8	0.475192	2.750000	chr6	16493229	16493323	LINE|L2|L2c	+	chr6	16299111	16761456	ATXN1|ENST00000244769.8	-	16299111,16326393,16485971,16522626,16585779,16657775,16753232,16754042,16761297	16306859,16328470,16486109,16522688,16585907,16657901,16753347,16754091,16761456	0.750000
spleen_female_adult_53_years	chr15	85330237	85330323	85330319	-	High_confidence	9	13	44	2.613557	5.078639	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314922	85330329	ADAMTS7P4|ENST00000558365.1	-	85314922,85319857,85330077	85314984,85319995,85330329	0.590909
spleen_female_adult_53_years	chr1	26831997	26832020	26832019	+	High_confidence	28	30	49	2.910553	4.806350	chr1	26831803	26832078	LINE|L2|L2b	+	chr1	26832019	26851174	ZDHHC18|ENST00000534643.5	+	26832019,26832446,26848607,26850300,26850557,26851128	26832072,26832607,26848757,26850438,26850606,26851174	0.653061
spleen_female_adult_53_years	chr10	100291414	100291459	100291439	-	High_confidence	14	14	95	5.642908	5.772230	chr10	100291357	100291454	SINE|MIR|MIR1_Amn	+	chr10	100288180	100291543	STRG.75164.2	-	100288180,100288971,100290014,100290400,100291300	100288478,100289056,100290138,100290519,100291543	0.547368
spleen_female_adult_53_years	chr8	25342488	25342489	25342488	+	RAMPAGE_only	7	7	9	0.534591	2.750000	chr8	25342534	25342606	SINE|Alu|AluSx3	+	chr8	25335571	25415716	STRG.60554.2	+	25335571,25341738,25342400,25345474,25351730,25358962,25363046,25364625,25366869,25368191,25368570,25369555,25372558,25373617,25374563,25377304,25380304,25382673,25389090,25390205,25391895,25392795,25395542,25399910,25400928,25403557,25407982,25408801,25410098,25411193	25340988,25341809,25342507,25345611,25351826,25359061,25363141,25364704,25366970,25368250,25368725,25369641,25372718,25373658,25374654,25377424,25380394,25382778,25389232,25390287,25391980,25392882,25395719,25399994,25401066,25403724,25408154,25408940,25410202,25415716	0.888889
spleen_female_adult_53_years	chr10	69315821	69315824	69315821	+	High_confidence	4	5	9	0.534591	2.947703	chr10	69315806	69315937	SINE|MIR|MIRc	+	chr10	69315853	69401882	HK1|NM_033496.2	+	69315853,69343826,69359896,69364782,69368535,69369236,69369440,69376933,69379861,69382486,69384332,69384795,69386322,69389196,69392124,69394949,69398594,69400990	69316014,69343989,69360045,69364902,69368631,69369336,69369624,69377089,69380095,69382791,69384481,69384915,69386418,69389296,69392308,69395105,69398828,69401882	1.000000
spleen_female_adult_53_years	chr18	2800597	2800614	2800613	+	RAMPAGE_only	3	4	6	0.356394	2.584963	chr18	2800506	2800637	SINE|Alu|AluJr	-	chr18	2796098	2801263	SMCHD1|ENST00000583800.1	+	2796098,2796406,2800522	2796107,2796521,2801263	0.666667
spleen_female_adult_53_years	chr22	36930296	36930310	36930296	+	RAMPAGE_only	17	17	27	1.603774	4.026987	chr22	36930052	36930305	SINE|MIR|MIRb	-	chr22	36922133	36938611	CSF2RB|ENST00000406230.5	+	36922133,36923243,36925986,36929401,36929638,36930374,36930654,36932764,36933831,36935350,36935629,36936548,36937376	36922283,36923367,36926177,36929559,36929807,36930510,36930830,36932904,36933994,36935441,36935687,36936652,36938611	0.925926
spleen_female_adult_53_years	chr11	108224068	108224075	108224074	+	High_confidence	69	69	106	6.296297	5.185719	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.716981
spleen_female_adult_53_years	chr11	75196374	75196375	75196374	+	High_confidence	9	9	9	0.534591	2.725481	chr11	75196317	75196417	LINE|CR1|L3	-	chr11	75196274	75200400	SLCO2B1|ENST00000528108.1	+	75196274,75200223	75196679,75200400	0.777778
spleen_female_adult_53_years	chr2	185425256	185425283	185425282	+	High_confidence	5	5	26	1.544375	4.053509	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185425013	185483108	STRG.19396.1	+	185425013,185434096,185483033	185425507,185434191,185483108	0.769231
spleen_female_adult_53_years	chr5	109952016	109952030	109952026	+	High_confidence	12	20	49	2.910553	5.096934	chr5	109951861	109952212	LTR|ERVL-MaLR|MLT1A0	+	chr5	109952039	109954869	STRG.40860.1	+	109952039	109954869	0.653061
spleen_female_adult_53_years	chr19	16145064	16145108	16145081	+	RAMPAGE_only	4	5	18	1.069183	3.852169	chr19	16145023	16145192	SINE|Alu|AluSc8	-	chr19	16143735	16157329	HSH2D|ENST00000593031.1	+	16143735,16148723,16152551,16153042,16154398,16157209	16143774,16148800,16152641,16153208,16154491,16157329	0.500000
spleen_female_adult_53_years	chr16	4628562	4628563	4628562	+	RAMPAGE_only	8	8	9	0.534591	2.750000	chr16	4628548	4628844	SINE|Alu|AluSx	-	chr16	4624960	4688908	MGRN1|ENST00000588994.5	+	4624960,4650364,4651962,4652677,4657245,4664708,4665101,4668264,4671390,4673497,4677462,4681549,4682822,4683223,4683842,4688795	4625048,4650483,4652051,4652824,4657363,4664775,4665151,4668312,4671459,4673657,4677572,4681776,4682946,4683269,4683932,4688908	0.555556
spleen_female_adult_53_years	chr2	102428838	102428839	102428838	+	RAMPAGE_only	6	6	9	0.534591	2.641604	chr2	102426667	102432316	LINE|L1|L1MA4	-	chr2	102432288	102452384	STRG.16415.16	+	102432288,102443199,102445188,102447069,102450847,102451765	102441377,102443323,102445340,102447207,102451021,102452384	1.000000
spleen_female_adult_53_years	chr9	113582163	113582168	113582167	+	High_confidence	4	4	9	0.534591	2.725481	chr9	113582216	113582304	SINE|MIR|MIRb	+	chr9	113581635	113597737	RGS3|ENST00000487344.1	+	113581635,113591332,113594429,113594918,113595598,113596767	113584427,113591397,113594531,113594980,113595765,113597737	1.000000
spleen_female_adult_53_years	chr8	94950288	94950289	94950288	+	High_confidence	25	25	29	1.722572	4.521641	chr8	94950149	94950305	SINE|MIR|MIRc	+	chr8	94949432	94952040	STRG.63337.1	+	94949432	94952040	0.896552
spleen_female_adult_53_years	chr1	53368122	53368149	53368122	-	High_confidence	3	3	14	0.831586	2.931209	chr1	53367866	53368194	LINE|L2|L2b	+	chr1	53366667	53368245	AC119428.2|ENST00000449958.1	-	53366667,53368005	53367277,53368245	0.642857
spleen_female_adult_53_years	chr6	143707921	143707973	143707968	+	RAMPAGE_only	62	70	180	10.691826	5.251272	chr6	143707720	143708120	LTR|ERVL-MaLR|MSTA	-	chr6	143678172	143712336	PHACTR2|ENST00000545919.1	+	143678172,143712015	143678209,143712336	0.677778
spleen_female_adult_53_years	chr15	44676019	44676036	44676019	-	High_confidence	5	5	9	0.534591	2.750000	chr15	44675900	44676034	SINE|Alu|FLAM_A	+	chr15	44669802	44675619	PATL2|ENST00000558481.5	-	44669802,44669966,44672014,44672387,44673234,44674149,44675485	44669874,44670087,44672239,44672456,44673377,44674230,44675619	0.555556
spleen_female_adult_53_years	chr2	24205453	24205454	24205453	-	High_confidence	12	12	13	0.772187	3.251629	chr2	24205380	24205748	LINE|L2|L2c	+	chr2	24202863	24205693	ITSN2|ENST00000478720.1	-	24202863,24205213	24204418,24205693	0.923077
spleen_female_adult_53_years	chr2	33706869	33706870	33706869	+	High_confidence	16	17	17	1.009784	3.875000	chr2	33706674	33707027	LTR|ERVL-MaLR|THE1A	+	chr2	33706885	34297753	LINC01320|ENST00000366209.6	+	33706885,33855687,33926839,33944427,34286642,34297467	33706953,33855753,33926968,33944553,34286746,34297753	0.764706
spleen_female_adult_53_years	chr8	23243634	23243635	23243634	+	High_confidence	92	92	96	5.702307	5.453798	chr8	23243551	23243732	LTR|ERV1|LTR21A	+	chr8	23243636	23262000	CHMP7|NM_152272.4	+	23243636,23246255,23249209,23255246,23256459,23258032,23258329,23258731,23259065,23260143,23260537	23243844,23246994,23249381,23255432,23256593,23258081,23258449,23258830,23259126,23260323,23262000	0.875000
spleen_female_adult_53_years	chr6	41732665	41732693	41732692	-	RAMPAGE_only	5	7	16	0.950385	3.506891	chr6	41732628	41732733	SINE|MIR|MIR	-	chr6	41683979	41731667	STRG.46900.4	-	41683979,41686089,41687093,41687752,41687907,41689730,41690662,41691000,41723460	41685078,41686237,41687169,41687809,41688028,41689811,41690917,41691235,41731667	0.812500
spleen_female_adult_53_years	chr1	54172696	54172730	54172716	-	RAMPAGE_only	4	4	17	1.009784	3.625000	chr1	54172537	54172738	LINE|L2|L2b	+	chr1	54138994	54153770	CDCP2|ENST00000371330.1	-	54138994,54141097,54144465,54152843	54140106,54141433,54144813,54153770	0.705882
spleen_female_adult_53_years	chr6	169725719	169725763	169725744	-	High_confidence	4	4	19	1.128582	3.794653	chr6	169725736	169726118	LTR|ERV1|MER65A	+	chr6	169724698	169725812	STRG.52387.1	-	169724698	169725812	0.631579
spleen_female_adult_53_years	chr22	26512100	26512130	26512129	-	High_confidence	3	3	7	0.415793	2.584963	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	0.857143
spleen_female_adult_53_years	chr19	49880212	49880213	49880212	+	RAMPAGE_only	14	14	17	1.009784	3.337175	chr19	49880157	49880245	SINE|MIR|MIR1_Amn	+	chr19	49878549	49888748	TBC1D17|ENST00000596243.5	+	49878549,49880278,49881267,49882040,49882241,49882763,49882972,49883650,49884252,49884458,49884658,49887475,49887717,49888230,49888423	49879504,49880402,49881475,49882152,49882400,49882892,49883076,49883745,49884369,49884559,49884758,49887573,49887834,49888317,49888748	0.823529
spleen_female_adult_53_years	chr3	44439852	44439897	44439852	-	High_confidence	48	64	262	15.562547	6.255806	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421126	44439917	C3orf86|ENST00000636468.1	-	44421126,44439796	44421813,44439917	0.503817
spleen_female_adult_53_years	chr13	24272663	24272667	24272666	+	High_confidence	8	8	19	1.128582	3.826875	chr13	24272710	24272887	SINE|MIR|MIRb	+	chr13	24272688	24278769	SPATA13|ENST00000488060.1	+	24272688,24278613	24273137,24278769	0.631579
spleen_female_adult_53_years	chr8	2726956	2726963	2726962	+	High_confidence	21	21	65	3.860937	4.838458	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.753846
spleen_female_adult_53_years	chr14	81427132	81427179	81427145	-	High_confidence	9	9	30	1.781971	3.467720	chr14	81426946	81427161	SINE|MIR|MIR	-	chr14	81260649	81427212	STON2|NM_033104.3	-	81260649,81276900,81370987,81395893,81398294,81427101	81270872,81278739,81371185,81396178,81398580,81427212	0.933333
spleen_female_adult_53_years	chr2	231072226	231072233	231072232	+	RAMPAGE_only	4	4	8	0.475192	2.807355	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.875000
spleen_female_adult_53_years	chr16	4239730	4239749	4239748	-	High_confidence	23	24	45	2.672956	4.561482	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.733333
spleen_female_adult_53_years	chr13	24272874	24272875	24272874	+	High_confidence	11	11	14	0.831586	3.392747	chr13	24272710	24272887	SINE|MIR|MIRb	+	chr13	24272688	24278769	SPATA13|ENST00000488060.1	+	24272688,24278613	24273137,24278769	0.642857
spleen_female_adult_53_years	chr20	5010312	5010313	5010312	-	High_confidence	137	140	155	9.206850	6.085100	chr20	5010113	5010529	LTR|ERVL|MLT2B2	-	chr20	4852357	5010293	STRG.115532.4	-	4852357,4859288,4862777,4869905,4873935,4874575,4883641,4884752,4885820,4899554,4902441,4912879,4932454,4970792,5010154	4857204,4862085,4867875,4870053,4874092,4874696,4883823,4884823,4885909,4899712,4902558,4912978,4932716,4970919,5010293	0.754839
spleen_female_adult_53_years	chr8	24324974	24324976	24324975	+	High_confidence	85	125	139	8.256466	5.445549	chr8	24324695	24325068	LTR|ERVL-MaLR|MLT1H1	-	chr8	24325036	24332725	ADAM28|ENST00000521110.1	+	24325036,24326553,24329984,24331149,24332659	24325089,24326635,24330115,24331327,24332725	0.834532
spleen_female_adult_53_years	chr1	23854362	23854412	23854362	-	RAMPAGE_only	3	4	17	1.009784	3.577820	chr1	23854162	23854315	LINE|L1|L1ME3E	-	chr1	23845076	23868294	FUCA1|ENST00000374479.3	-	23845076,23846073,23848648,23854359,23859797,23863133,23865490,23867897	23845855,23846173,23848839,23854560,23859903,23863271,23865625,23868294	0.941176
spleen_female_adult_53_years	chr20	3869486	3869506	3869486	+	RAMPAGE_only	5	5	12	0.712788	3.095795	chr20	3869472	3869587	SINE|Alu|AluJr4	-	chr20	3854501	3876110	STRG.115487.3	+	3854501,3861331,3862253	3854741,3861504,3876110	0.666667
spleen_female_adult_53_years	chr2	43143091	43143114	43143113	-	High_confidence	35	36	89	5.286514	4.896445	chr2	43142863	43143298	LTR|ERVL-MaLR|MLT1N2	-	chr2	43096401	43143115	STRG.13655.1	-	43096401,43132369,43143025	43098040,43132480,43143115	0.808989
spleen_female_adult_53_years	chr6	166957430	166957439	166957438	-	High_confidence	3	3	8	0.475192	3.000000	chr6	166957416	166957859	LINE|L2|L2a	+	chr6	166929539	166957184	RNASET2|ENST00000476238.6	-	166929539,166931043,166934090,166938894,166943018,166946681,166948569,166952487,166956096,166957125	166929791,166931118,166934136,166939008,166943089,166946739,166948625,166952548,166956191,166957184	0.625000
spleen_female_adult_53_years	chr15	34588450	34588451	34588450	-	High_confidence	6	6	9	0.534591	2.947703	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.777778
spleen_female_adult_53_years	chr3	188947214	188947237	188947236	+	High_confidence	8	8	15	0.890985	3.506891	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947240	189133676	STRG.29900.1	+	188947240,189000773,189004542,189023749,189127056,189132398	188947425,189000911,189004760,189023946,189127210,189133676	0.533333
spleen_female_adult_53_years	chr2	55618850	55618904	55618869	-	High_confidence	8	8	33	1.960168	4.597276	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.939394
spleen_female_adult_53_years	chr19	33395177	33395191	33395177	-	High_confidence	6	8	25	1.484976	3.803509	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	0.960000
spleen_female_adult_53_years	chr8	24387984	24387998	24387997	-	High_confidence	9	9	17	1.009784	3.750000	chr8	24387825	24388275	LTR|ERVK|LTR22A	-	chr8	24297918	24388042	STRG.60525.1	-	24297918,24387160,24387750	24300929,24387341,24388042	0.647059
spleen_female_adult_53_years	chr2	64015513	64015531	64015516	-	RAMPAGE_only	3	3	8	0.475192	2.807355	chr2	64015505	64015679	DNA|hAT-Charlie|MER20	-	chr2	63892145	64019072	VPS54|ENST00000409558.8	-	63892145,63897495,63899473,63912344,63912539,63913222,63914181,63916899,63919882,63920445,63921205,63933672,63942464,63944599,63947382,63949036,63962057,63965834,63968956,63972165,63981645,63983863,64018937	63893535,63897590,63899581,63912425,63912661,63913310,63914287,63916963,63919995,63920627,63921335,63934013,63942561,63944655,63947490,63949163,63962443,63965966,63968991,63972244,63981851,63984019,64019072	0.625000
spleen_female_adult_53_years	chr12	93773408	93773412	93773411	+	RAMPAGE_only	10	12	19	1.128582	4.037401	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.526316
spleen_female_adult_53_years	chr5	18746155	18746208	18746155	-	High_confidence	21	21	67	3.979735	5.197814	chr5	18746065	18746356	LTR|ERV1|LTR12F	-	chr5	18742385	18746195	STRG.37366.1	-	18742385	18746195	0.910448
spleen_female_adult_53_years	chr8	11493990	11494028	11493990	+	High_confidence	26	34	138	8.197067	6.228814	chr8	11493862	11494036	SINE|MIR|MIRb	-	chr8	11494000	11564604	BLK|ENST00000259089.8	+	11494000,11543223,11546051,11548031,11549023,11550158,11554742,11555331,11556657,11557961,11561301,11562978,11563902	11494591,11543347,11546103,11548125,11549122,11550262,11554889,11555484,11556837,11558038,11561452,11563110,11564604	0.884058
spleen_female_adult_53_years	chr9	111284841	111284875	111284874	-	High_confidence	72	76	145	8.612860	5.573215	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111284312	111284864	STRG.69618.1	-	111284312	111284864	0.565517
spleen_female_adult_53_years	chr3	52800635	52800636	52800635	+	RAMPAGE_only	7	7	9	0.534591	2.947703	chr3	52800685	52800758	SINE|MIR|MIR1_Amn	+	chr3	52794797	52809009	ITIH3|ENST00000449956.2	+	52794797,52795602,52796480,52796738,52797104,52797816,52798965,52799371,52799752,52800537,52800964,52802333,52802666,52803854,52804725,52805807,52806102,52806292,52806900,52807746,52808109,52808551	52794896,52795623,52796647,52796843,52797267,52797930,52799091,52799488,52799921,52800663,52801146,52802519,52802806,52804009,52804734,52805840,52806138,52806406,52807105,52807916,52808221,52809009	0.888889
spleen_female_adult_53_years	chr9	35644639	35644640	35644639	-	RAMPAGE_only	13	14	18	1.069183	3.734522	chr9	35644437	35644668	LINE|CR1|L3	+	chr9	35609984	35618413	CD72|ENST00000490239.5	-	35609984,35610601,35611803,35612847,35615942,35617175,35618013,35618271	35610300,35610753,35611919,35612993,35616689,35617247,35618121,35618413	0.777778
spleen_female_adult_53_years	chr13	46374832	46374833	46374832	-	RAMPAGE_only	14	14	14	0.831586	3.664498	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46371940	46378645	RUBCNL|ENST00000439642.1	-	46371940,46377889,46378446	46372597,46378005,46378645	0.714286
spleen_female_adult_53_years	chr14	23636366	23636367	23636366	+	High_confidence	8	8	9	0.534591	2.750000	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	0.777778
spleen_female_adult_53_years	chr2	88863320	88863321	88863320	-	RAMPAGE_only	4	6	6	0.356394	2.584963	chr2	88862967	88863276	SINE|Alu|AluY	-	chr2	88857160	88857683	IGKC|ENST00000390237.2	-	88857160	88857683	0.833333
spleen_female_adult_53_years	chr19	35899320	35899345	35899320	-	High_confidence	2	2	10	0.593990	2.725481	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35887951	35899737	NFKBID|NM_001321831.1	-	35887951,35889889,35890373,35895979,35896217,35896391,35896725,35896912,35897650,35898471,35898718,35899706	35888612,35890054,35890490,35896128,35896269,35896538,35896831,35897103,35897838,35898532,35898822,35899737	0.800000
spleen_female_adult_53_years	chr3	129559620	129559640	129559620	-	High_confidence	9	9	15	0.890985	3.664498	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555217	129560414	STRG.27551.7	-	129555217,129556616,129557082,129558427,129560329	129556428,129556691,129557223,129559783,129560414	0.933333
spleen_female_adult_53_years	chr12	68963244	68963269	68963264	-	High_confidence	16	22	50	2.969952	5.165730	chr12	68963127	68963528	LTR|ERV1|MER39B	+	chr12	68962506	68963326	STRG.86701.2	-	68962506	68963326	0.640000
spleen_female_adult_53_years	chr22	32580258	32580291	32580290	+	High_confidence	3	3	6	0.356394	2.584963	chr22	32580275	32580613	DNA|TcMar-Tigger|MER44A	+	chr22	32580168	32584174	STRG.120659.1	+	32580168,32583876	32580350,32584174	1.000000
spleen_female_adult_53_years	chr1	166850083	166850125	166850124	+	RAMPAGE_only	5	7	18	1.069183	3.734522	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.944444
spleen_female_adult_53_years	chr6	18330710	18330724	18330723	+	High_confidence	7	7	21	1.247380	3.689704	chr6	18330719	18330830	SINE|Alu|AluSq2	+	chr6	18330496	18331274	STRG.45441.1	+	18330496	18331274	0.904762
spleen_female_adult_53_years	chr2	64932619	64932620	64932619	-	High_confidence	13	13	16	0.950385	3.640224	chr2	64932619	64932698	DNA|hAT-Tip100|MER91C	+	chr2	64925689	64932999	STRG.14777.2	-	64925689	64932999	0.562500
spleen_female_adult_53_years	chr16	29154292	29154349	29154315	+	RAMPAGE_only	12	12	53	3.148149	4.234312	chr16	29154014	29154324	LINE|L1|L1MD2	+	chr16	29142865	29331429	STRG.102943.10	+	29142865,29148278,29251478,29302286,29312349,29326346,29331248	29148175,29154885,29251721,29302388,29312589,29328624,29331429	1.000000
spleen_female_adult_53_years	chr12	77833493	77833508	77833507	+	RAMPAGE_only	3	3	7	0.415793	2.584963	chr12	77833402	77834260	LTR|ERV1|LTR1	-	chr12	77830904	77860278	STRG.87104.10	+	77830904,77837290,77843580	77837200,77843390,77860278	0.571429
spleen_female_adult_53_years	chr11	65441567	65441711	65441567	+	RAMPAGE_only	11	11	96	5.702307	5.136674	chr11	65441504	65441864	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.989583
spleen_female_adult_53_years	chr3	24137852	24137866	24137859	+	RAMPAGE_only	6	6	25	1.484976	4.022055	chr3	24137269	24137970	LINE|L2|L2a	-	chr3	24151323	24189956	LOC101927854|NR_121667.1	+	24151323,24173783,24177949,24189574	24151400,24173904,24178012,24189956	0.760000
spleen_female_adult_53_years	chr13	27212696	27212700	27212699	+	High_confidence	15	26	40	2.375961	4.496815	chr13	27211990	27213118	LTR|ERV1|LTR12D	+	chr13	27212718	27219859	STRG.89788.1	+	27212718,27219346	27213203,27219859	0.975000
spleen_female_adult_53_years	chr19	44914313	44914322	44914321	+	High_confidence	19	19	33	1.960168	4.574401	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.515152
spleen_female_adult_53_years	chr13	113187336	113187344	113187336	-	High_confidence	5	5	12	0.712788	3.022055	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	1.000000
spleen_female_adult_53_years	chr2	218287266	218287306	218287266	-	High_confidence	8	8	27	1.603774	3.917189	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.851852
spleen_female_adult_53_years	chr19	54218365	54218392	54218391	-	RAMPAGE_only	6	6	11	0.653389	3.121928	chr19	54218103	54218345	LINE|L2|L2	-	chr19	54216673	54222978	LILRB3|ENST00000414379.5	-	54216673,54217318,54218360,54218644,54218762,54219128,54220154,54220527,54221082,54221617,54221913,54222277,54222746,54222942	54217239,54217474,54218413,54218682,54218838,54219245,54220205,54220830,54221379,54221786,54222130,54222562,54222782,54222978	0.636364
spleen_female_adult_53_years	chr5	173746148	173746220	173746176	-	High_confidence	17	18	64	3.801538	5.399900	chr5	173745880	173746596	LTR|ERV1|MER4A	+	chr5	173719245	173746211	LINC01484|ENST00000518902.1	-	173719245,173746019	173719543,173746211	0.703125
spleen_female_adult_53_years	chr16	29963560	29963561	29963560	+	High_confidence	10	12	12	0.712788	3.251629	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963399	29968594	TMEM219|ENST00000569445.2	+	29963399,29968024	29963589,29968594	0.500000
spleen_female_adult_53_years	chr17	4716897	4716898	4716897	+	RAMPAGE_only	8	8	8	0.475192	2.750000	chr17	4716835	4717132	SINE|Alu|AluSz6	-	chr17	4715588	4721138	ARRB2|ENST00000571206.1	+	4715588,4716146,4716411,4717216,4717684,4717887,4718260,4718611,4719282,4720215,4720392,4720585,4720945	4716033,4716191,4716608,4717276,4717752,4718023,4718345,4718684,4719420,4720299,4720472,4720640,4721138	0.625000
spleen_female_adult_53_years	chr16	27330079	27330102	27330079	+	RAMPAGE_only	5	5	15	0.890985	2.896292	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27340203	27355876	STRG.102597.8	+	27340203,27342120,27344868,27352539,27355807	27340273,27342259,27346618,27352696,27355876	0.600000
spleen_female_adult_53_years	chr9	98045561	98045605	98045604	+	High_confidence	2	2	8	0.475192	3.000000	chr9	98045312	98045711	LTR|ERV1|MER57B1	+	chr9	98045576	98046842	STRG.69276.1	+	98045576	98046842	0.750000
spleen_female_adult_53_years	chr15	77285080	77285081	77285080	-	RAMPAGE_only	9	10	10	0.593990	2.641604	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.800000
spleen_female_adult_53_years	chr7	22725825	22725876	22725875	+	High_confidence	7	7	21	1.247380	3.921928	chr7	22725923	22726198	LTR|Gypsy?|LTR88b	+	chr7	22725883	22732002	IL6|ENST00000404625.5	+	22725883,22727178,22727443,22728692,22729513,22731405	22726258,22727281,22727634,22728806,22729660,22732002	0.904762
spleen_female_adult_53_years	chr4	38078772	38078788	38078772	+	RAMPAGE_only	3	3	8	0.475192	3.000000	chr4	38078433	38078801	LTR|ERVL-MaLR|MLT1A	+	chr4	38020676	38137743	TBC1D1|ENST00000510573.6	+	38020676,38021585,38027787,38035587,38044361,38045816,38049617,38053105,38054198,38089931,38095928,38102998,38115709,38118032,38124961,38133083,38137134	38020695,38021718,38027879,38035698,38044490,38045903,38049898,38053225,38054338,38090117,38096090,38103157,38115954,38118192,38125131,38133257,38137743	0.750000
spleen_female_adult_53_years	chr7	22726013	22726071	22726013	+	High_confidence	3	3	17	1.009784	3.577820	chr7	22725923	22726198	LTR|Gypsy?|LTR88b	+	chr7	22725883	22732002	IL6|ENST00000404625.5	+	22725883,22727178,22727443,22728692,22729513,22731405	22726258,22727281,22727634,22728806,22729660,22732002	0.588235
spleen_female_adult_53_years	chr2	217277924	217277980	217277979	+	High_confidence	45	46	175	10.394831	5.364776	chr2	217277834	217277987	SINE|MIR|MIR3	-	chr2	217277853	217308103	STRG.20784.2	+	217277853,217282714,217296631,217302685	217278272,217282809,217296770,217308103	0.931429
spleen_female_adult_53_years	chr9	137738679	137738713	137738707	+	High_confidence	3	3	11	0.653389	3.095795	chr9	137738221	137739080	LINE|L1|L1MB3	+	chr9	137738606	137754221	EHMT1|ENST00000495657.5	+	137738606,137743370,137743901,137752330,137754170	137738779,137743528,137744090,137752408,137754221	0.636364
spleen_female_adult_53_years	chr2	113625650	113625681	113625680	-	RAMPAGE_only	7	9	19	1.128582	3.787144	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	1.000000
spleen_female_adult_53_years	chr4	39032917	39032926	39032920	-	High_confidence	7	9	21	1.247380	3.892407	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	38993734	39032922	TMEM156|ENST00000344606.6	-	38993734,38998723,39032225,39032641	38993998,38998909,39032443,39032922	0.761905
spleen_female_adult_53_years	chr7	38336802	38336804	38336803	+	RAMPAGE_only	6	9	10	0.593990	2.947703	chr7	38336097	38336809	LTR|ERV1|LTR30	-	chr7	38341576	38342702	TRG-AS1|ENST00000629576.1	+	38341576,38342255	38341799,38342702	0.700000
spleen_female_adult_53_years	chr12	121582266	121582279	121582278	-	RAMPAGE_only	6	7	11	0.653389	3.321928	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121429095	121581015	KDM2B|NM_032590.4	-	121429095,121439856,121440815,121441069,121442156,121442991,121443679,121444011,121444449,121445274,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549459,121574546,121575780,121578801,121580785	121430469,121440075,121440977,121441233,121442836,121443030,121443793,121444272,121444536,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548983,121549638,121574593,121575859,121578946,121581015	0.727273
spleen_female_adult_53_years	chr19	17075190	17075200	17075199	-	High_confidence	4	4	9	0.534591	2.947703	chr19	17075045	17075226	SINE|MIR|MIRb	-	chr19	17049765	17075200	HAUS8|ENST00000593360.1	-	17049765,17052824,17055860,17058548,17058810,17059556,17059996,17062697,17069030,17073273	17050176,17052966,17056002,17058707,17058876,17059651,17060092,17062779,17069086,17075200	0.888889
spleen_female_adult_53_years	chr3	11225885	11225913	11225912	-	High_confidence	6	6	16	0.950385	3.456565	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11225559	11225905	STRG.22493.1	-	11225559	11225905	0.500000
spleen_female_adult_53_years	chr1	212794761	212794794	212794761	+	High_confidence	3	3	15	0.890985	3.139572	chr1	212794607	212794885	LINE|L2|L2c	-	chr1	212794682	212804651	TATDN3|ENST00000530399.2	+	212794682,212795094,212796516,212797111,212802700,212804319,212804595	212794808,212795127,212796590,212797196,212802763,212804429,212804651	0.733333
spleen_female_adult_53_years	chr13	100213868	100213905	100213892	+	RAMPAGE_only	39	39	183	10.870023	6.144078	chr13	100212683	100214433	LINE|L1|L1MA3	-	chr13	100212749	100530432	STRG.92131.4	+	100212749,100235841,100257594,100262728,100268688,100273195,100301459,100302923,100307191,100309832,100330560,100340156,100368471,100425632,100449251,100515426,100527674,100530097	100214001,100235878,100257673,100262831,100268783,100273346,100301603,100302998,100307260,100309908,100330671,100340259,100368574,100425731,100449305,100515567,100527752,100530432	0.901639
spleen_female_adult_53_years	chr15	74614931	74614965	74614940	+	High_confidence	4	6	20	1.187981	3.046439	chr15	74614989	74615037	SINE|MIR|MIRc	+	chr15	74614993	74630201	CLK3|NM_001130028.1	+	74614993,74619196,74620008,74622119,74622493,74624901,74625801,74627351,74627538,74627969,74628603,74628941,74629706	74615898,74619348,74620225,74622216,74622560,74625018,74625968,74627446,74627668,74628052,74628683,74629032,74630201	1.000000
spleen_female_adult_53_years	chr8	143558019	143558020	143558019	+	High_confidence	34	35	35	2.078966	4.432620	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.800000
spleen_female_adult_53_years	chr1	152913109	152913110	152913109	-	RAMPAGE_only	17	18	22	1.306779	3.970573	chr1	152912987	152913194	LINE|L2|L2	+	chr1	152897735	152898749	STRG.6830.1	-	152897735	152898749	0.636364
spleen_female_adult_53_years	chr20	40588874	40588879	40588876	-	RAMPAGE_only	32	49	81	4.811322	5.570345	chr20	40588601	40589093	LTR|ERVL-MaLR|MLT1D	-	chr20	40578862	40580725	STRG.116905.2	-	40578862,40580510	40579345,40580725	0.716049
spleen_female_adult_53_years	chr9	127906579	127906616	127906612	-	RAMPAGE_only	27	28	108	6.415096	5.511346	chr9	127906602	127906670	SINE|MIR|MIRc	-	chr9	127890697	127914762	STRG.70631.9	-	127890697,127894511,127896241,127905206,127909950,127912267,127914655	127891043,127894691,127896332,127908581,127910058,127912680,127914762	0.990741
spleen_female_adult_53_years	chr6	168093100	168093118	168093100	-	High_confidence	2	2	8	0.475192	2.807355	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.750000
spleen_female_adult_53_years	chr3	189121294	189121347	189121294	+	High_confidence	27	27	115	6.830889	4.276471	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189121317	189122157	STRG.29900.4	+	189121317,189121661	189121371,189122157	0.704348
spleen_female_adult_53_years	chr6	6587401	6587402	6587401	-	High_confidence	13	13	13	0.772187	3.392747	chr6	6587337	6587525	DNA|hAT-Charlie|MER5A	-	chr6	6562191	6587390	STRG.44846.1	-	6562191,6569417,6587187	6564388,6569489,6587390	0.538462
spleen_female_adult_53_years	chr1	206052884	206052915	206052890	+	RAMPAGE_only	14	14	42	2.494759	4.772582	chr1	206052518	206053000	LTR|ERV1|LTR2B	+	chr1	206035194	206061913	STRG.9331.3	+	206035194,206051852,206053020,206061661	206035299,206052001,206061397,206061913	0.928571
spleen_female_adult_53_years	chr22	39066255	39066335	39066334	+	High_confidence	33	34	141	8.375264	6.534396	chr22	39066093	39066470	LTR|ERV1|LTR7	-	chr22	39066274	39071289	STRG.120927.1	+	39066274,39068708	39066358,39071289	0.588652
spleen_female_adult_53_years	chr11	108223580	108223581	108223580	+	High_confidence	8	8	10	0.593990	2.721928	chr11	108223533	108223589	SINE|MIR|MIR	+	chr11	108223115	108253996	STRG.81285.7	+	108223115,108227594,108227775,108229177,108235669,108243952,108244787,108246963,108248932,108250700,108251836,108252816,108253813	108224871,108227696,108227888,108229323,108235834,108244118,108245026,108247127,108249102,108251072,108252031,108252912,108253996	1.000000
spleen_female_adult_53_years	chr16	11587444	11587469	11587468	-	High_confidence	9	11	17	1.009784	2.774397	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.941176
spleen_female_adult_53_years	chr16	5058787	5058789	5058787	-	High_confidence	7	11	12	0.712788	3.418296	chr16	5058754	5058790	DNA|hAT|MER53	-	chr16	5047877	5058620	C16orf89|ENST00000592343.1	-	5047877,5055245,5056052,5058492	5047964,5055350,5056188,5058620	0.750000
spleen_female_adult_53_years	chr22	35381325	35381326	35381325	+	High_confidence	12	12	12	0.712788	3.251629	chr22	35381303	35381356	SINE|MIR|MIRb	+	chr22	35381066	35394214	HMOX1|NM_002133.2	+	35381066,35383105,35386684,35389863,35393467	35381196,35383226,35387176,35389963,35394214	1.000000
spleen_female_adult_53_years	chr17	2667195	2667196	2667195	+	High_confidence	10	10	10	0.593990	2.646439	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.800000
spleen_female_adult_53_years	chr10	20002839	20002840	20002839	+	RAMPAGE_only	7	7	8	0.475192	2.521641	chr10	20002558	20002860	LINE|L2|L2c	-	chr10	20043319	20280357	PLXDC2|ENST00000377238.2	+	20043319,20046868,20068169,20143294,20147783,20164467,20176998,20177327,20211668,20217425,20219063,20245344,20279702	20043418,20047015,20068239,20143417,20147902,20164567,20177094,20177409,20211729,20217576,20219102,20245505,20280357	0.875000
spleen_female_adult_53_years	chr7	140390969	140390980	140390979	-	RAMPAGE_only	3	3	7	0.415793	2.521641	chr7	140390212	140391163	LINE|L2|L2a	+	chr7	140333751	140398457	SLC37A3|ENST00000340308.7	-	140333751,140337283,140348625,140351272,140352061,140355667,140358639,140364407,140369589,140380281,140382437,140398415	140335504,140337349,140348767,140351451,140352146,140355764,140358785,140364491,140369682,140380390,140382596,140398457	0.714286
spleen_female_adult_53_years	chr1	153967482	153967504	153967486	+	High_confidence	11	13	26	1.544375	3.863465	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.884615
spleen_female_adult_53_years	chr9	130003866	130003867	130003866	-	RAMPAGE_only	15	17	20	1.187981	4.037401	chr9	130003641	130003934	SINE|Alu|AluY	+	chr9	129887186	130043162	FNBP1|ENST00000446176.6	-	129887186,129895837,129899964,129900425,129902868,129908889,129915965,129923843,129924959,129927194,129929566,129957359,129958490,129978464,129979317,129994842,130042951	129890546,129895996,129900101,129900547,129903001,129908999,129915980,129924026,129925157,129927341,129929695,129957464,129958553,129978612,129979374,129994958,130043162	0.500000
spleen_female_adult_53_years	chr1	169662003	169662004	169662003	+	High_confidence	51	51	57	3.385745	4.538368	chr1	169661033	169662412	LTR|ERV1|LTR12C	+	chr1	169662006	169853085	C1orf112|ENST00000498289.5	+	169662006,169683468,169683755,169783810,169784876,169798856,169800882,169802620,169803168,169804111,169806003,169807790,169821678,169823407,169827050,169827710,169829262,169830258,169830695,169832416,169836926,169842416,169843673,169847689,169849499,169850264,169850453,169851816,169852789	169662523,169683625,169683932,169783928,169784913,169798958,169800971,169802725,169803309,169804240,169806088,169807929,169821759,169823472,169827199,169827840,169829449,169830341,169830747,169832506,169837112,169842539,169843769,169847803,169849604,169850327,169850566,169851936,169853085	0.947368
spleen_female_adult_53_years	chr8	144012228	144012278	144012277	+	High_confidence	12	12	38	2.257163	4.649115	chr8	144011998	144012361	LINE|L2|L2b	-	chr8	144012229	144042096	STRG.65625.1	+	144012229,144039908,144040567,144041231,144041983	144012726,144040463,144041107,144041371,144042096	1.000000
spleen_female_adult_53_years	chr8	81161393	81161408	81161396	+	High_confidence	58	59	108	6.415096	5.423403	chr8	81160843	81161446	LINE|L2|L2a	-	chr8	81161141	81162823	STRG.62598.1	+	81161141	81162823	0.870370
spleen_female_adult_53_years	chr5	126814074	126814142	126814074	+	RAMPAGE_only	7	7	41	2.435360	4.832923	chr5	126813882	126814194	SINE|Alu|AluSp	-	chr5	126811712	126821081	LMNB1|ENST00000494185.1	+	126811712,126818921,126820909	126811898,126819142,126821081	0.853659
spleen_female_adult_53_years	chr12	7502483	7502559	7502504	-	High_confidence	9	13	65	3.860937	4.925870	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.938462
spleen_female_adult_53_years	chr6	31587007	31587014	31587007	+	High_confidence	43	45	165	9.800840	5.860424	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.939394
spleen_female_adult_53_years	chr20	51526030	51526044	51526030	-	RAMPAGE_only	4	5	9	0.534591	2.500000	chr20	51525529	51526222	LINE|L2|L2b	+	chr20	51386956	51542719	NFATC2|NM_012340.4	-	51386956,51398642,51432066,51435187,51435705,51454547,51473979,51475457,51516783,51523080,51542369	51391451,51398730,51432756,51435314,51435761,51454688,51474152,51475660,51516955,51524110,51542719	0.888889
spleen_female_adult_53_years	chr5	150640300	150640348	150640347	+	High_confidence	94	96	212	12.592595	6.454790	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.981132
spleen_female_adult_53_years	chr1	27301432	27301455	27301454	+	RAMPAGE_only	4	5	11	0.653389	3.095795	chr1	27301504	27301735	SINE|MIR|MIRb	+	chr1	27305013	27306890	WDTC1|ENST00000472249.2	+	27305013,27306185,27306707	27305193,27306450,27306890	0.636364
spleen_female_adult_53_years	chr15	85715525	85715526	85715525	+	RAMPAGE_only	5	5	7	0.415793	2.584963	chr15	85715056	85715544	LINE|L1|L1ME4b	-	chr15	85710442	85717391	AKAP13|ENST00000559278.1	+	85710442,85715787,85717289	85710645,85715923,85717391	0.857143
spleen_female_adult_53_years	chr16	30097080	30097081	30097080	+	High_confidence	13	13	13	0.772187	3.392747	chr16	30096875	30097207	LTR|ERV1|LTR10B2	+	chr16	30096429	30104116	AC012645.1|ENST00000515455.2	+	30096429,30103456	30097419,30104116	0.846154
spleen_female_adult_53_years	chr12	1080685	1080686	1080685	+	RAMPAGE_only	5	6	8	0.475192	3.000000	chr12	1080490	1080912	LTR|ERVL-MaLR|THE1A	+	chr12	1083140	1444589	ERC1|ENST00000538971.6	+	1083140,1104749,1110191,1115865,1141619,1180539,1181924,1183280,1189858,1204500,1236768,1289851,1371832,1408148,1410388,1444561	1083580,1104824,1110347,1116033,1141787,1180677,1182065,1183421,1190052,1204512,1236904,1290012,1371977,1408247,1410453,1444589	1.000000
spleen_female_adult_53_years	chr5	170036529	170036553	170036552	+	RAMPAGE_only	3	4	11	0.653389	2.646439	chr5	170036590	170036728	LINE|L2|L2c	+	chr5	170008496	170083377	STRG.43808.4	+	170008496,170008687,170018959,170027862,170034398,170036514,170041054,170042012,170045815,170047509,170050255,170055304,170067509,170069136,170075946,170077709,170078974,170080162,170081841,170082795	170008597,170008746,170019108,170027948,170034555,170036555,170041145,170042132,170045905,170047614,170050397,170057666,170067686,170069220,170076084,170077837,170079146,170080283,170081984,170083377	0.727273
spleen_female_adult_53_years	chr2	185782498	185782511	185782507	+	RAMPAGE_only	3	3	10	0.593990	3.121928	chr2	185782182	185782614	LINE|L2|L2c	-	chr2	185738894	185833290	FSIP2|ENST00000424728.5	+	185738894,185739345,185743132,185744321,185745428,185746668,185747312,185753721,185756191,185760987,185761971,185763182,185764501,185782704,185786251,185788642,185799696,185813544,185815370,185824433,185828155,185831812,185833089	185738993,185739471,185743294,185744411,185745568,185746810,185747423,185753842,185756278,185761103,185762017,185763289,185764565,185782762,185786288,185797526,185809133,185814042,185815471,185824480,185828199,185831882,185833290	0.700000
spleen_female_adult_53_years	chr3	48479494	48479551	48479522	-	High_confidence	6	6	38	2.257163	4.714647	chr3	48479425	48479570	LINE|L1|L1M4	+	chr3	48469359	48479559	SHISA5|ENST00000486344.5	-	48469359,48469727,48479176	48469573,48469843,48479559	0.973684
spleen_female_adult_53_years	chr15	80017766	80017793	80017792	-	High_confidence	76	81	250	14.849758	4.892157	chr15	80016339	80017800	LTR|ERV1|LTR12C	+	chr15	79960891	80017818	STRG.100473.3	-	79960891,80017604	79961174,80017818	0.680000
spleen_female_adult_53_years	chr21	43326077	43326078	43326077	-	High_confidence	34	34	37	2.197764	4.722967	chr21	43326046	43326178	SINE|MIR|MIRb	+	chr21	43325105	43326068	STRG.119114.1	-	43325105	43326068	0.972973
spleen_female_adult_53_years	chr7	128648860	128648861	128648860	+	RAMPAGE_only	7	7	10	0.593990	2.521928	chr7	128648764	128648951	SINE|Alu|AluJb	-	chr7	128651184	128652334	AC018638.4|ENST00000465971.1	+	128651184	128652334	0.500000
spleen_female_adult_53_years	chr15	63497888	63497893	63497888	-	High_confidence	5	7	12	0.712788	3.084963	chr15	63497648	63498105	LINE|L2|L2c	+	chr15	63488989	63497796	STRG.99469.1	-	63488989,63497653	63491172,63497796	0.500000
spleen_female_adult_53_years	chr19	41221024	41221060	41221046	+	High_confidence	5	6	17	1.009784	3.375000	chr19	41220913	41221049	SINE|MIR|MIR	+	chr19	41220399	41221996	AXL|ENST00000594880.1	+	41220399,41220635,41221145,41221879	41220501,41220858,41221246,41221996	0.588235
spleen_female_adult_53_years	chr2	185424997	185424998	185424997	+	High_confidence	5	5	7	0.415793	2.584963	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185425013	185483108	STRG.19396.1	+	185425013,185434096,185483033	185425507,185434191,185483108	0.857143
spleen_female_adult_53_years	chr13	106561950	106561951	106561950	-	High_confidence	14	14	15	0.890985	3.664498	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.933333
spleen_female_adult_53_years	chr7	134432435	134432453	134432435	-	High_confidence	2	2	7	0.415793	2.521641	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	1.000000
spleen_female_adult_53_years	chr11	60327249	60327254	60327249	+	High_confidence	64	64	109	6.474495	5.625129	chr11	60327087	60327483	LTR|ERVL-MaLR|MLT1A1	+	chr11	60327265	60341769	STRG.78515.2	+	60327265,60334881,60337740,60339865,60340775	60332305,60335042,60337947,60339964,60341769	0.954128
spleen_female_adult_53_years	chr17	56904541	56904542	56904541	-	High_confidence	7	7	10	0.593990	2.947703	chr17	56904513	56905129	LINE|L1|L1ME3C	+	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.600000
spleen_female_adult_53_years	chr1	110871198	110871212	110871209	+	High_confidence	99	99	401	23.819012	6.562902	chr1	110870731	110871665	LINE|L2|L2b	-	chr1	110871198	110899936	CD53|NM_001040033.1	+	110871198,110873155,110891391,110892344,110894326,110894959,110896652,110897808,110899123	110871259,110873248,110891471,110892533,110894401,110895055,110896733,110897892,110899936	0.678304
spleen_female_adult_53_years	chr9	97575036	97575069	97575039	+	High_confidence	53	59	96	5.702307	4.687674	chr9	97574036	97575455	LTR|ERV1|LTR12C	+	chr9	97574980	97601830	STRG.69236.1	+	97574980,97591290,97599633	97575486,97591435,97601830	0.979167
spleen_female_adult_53_years	chr6	79631302	79631329	79631328	+	High_confidence	17	24	48	2.851154	4.784830	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
spleen_female_adult_53_years	chr4	38750592	38750593	38750592	+	RAMPAGE_only	8	8	8	0.475192	2.500000	chr4	38750527	38751065	LTR|ERVL-MaLR|MLT1G3	-	chr4	38744132	38755369	STRG.32081.1	+	38744132,38745340,38746789,38748299,38748702,38750593	38744267,38745461,38746876,38748374,38748790,38755369	1.000000
spleen_female_adult_53_years	chr19	54616832	54616894	54616893	+	High_confidence	24	24	60	3.563942	5.008986	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54616929	54637556	LILRB1|NM_006669.6	+	54616929,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637556	0.966667
spleen_female_adult_53_years	chr2	37829161	37829216	37829185	-	High_confidence	6	6	39	2.316562	4.611949	chr2	37828936	37829243	SINE|Alu|AluJr	+	chr2	37825246	37829220	STRG.13322.1	-	37825246,37828932	37827878,37829220	0.974359
spleen_female_adult_53_years	chr16	16007337	16007339	16007337	+	RAMPAGE_only	2	5	7	0.415793	2.521641	chr16	16007245	16007523	SINE|Alu|AluSz	-	chr16	15949576	16143074	ABCC1|NM_004996.3	+	15949576,16007815,16009775,16014490,16016495,16033108,16036471,16044449,16045835,16048141,16052723,16056091,16068155,16071641,16076325,16079351,16083365,16086823,16090404,16102626,16106737,16111374,16114765,16121974,16124788,16125809,16131788,16134349,16136477,16138363,16141172	15949799,16007992,16009901,16014628,16016621,16033170,16036603,16044680,16046013,16048303,16052816,16056295,16068302,16071729,16076401,16079478,16083542,16086991,16090588,16102717,16106873,16111582,16115076,16122174,16124915,16125911,16131935,16134508,16136644,16138558,16143074	0.714286
spleen_female_adult_53_years	chr6	145736020	145736034	145736020	-	High_confidence	6	6	12	0.712788	2.688722	chr6	145735975	145736071	SINE|MIR|MIR3	+	chr6	145625303	145735855	EPM2A|NM_005670.3	-	145625303,145635244,145686121,145735197	145627693,145635486,145686296,145735855	0.916667
spleen_female_adult_53_years	chr2	143070964	143070968	143070964	+	RAMPAGE_only	236	239	363	21.561849	5.724122	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143091361	143238352	ARHGAP15|ENST00000409869.5	+	143091361,143092156,143155476,143202133,143216383,143228580,143235945	143091422,143092258,143155655,143202202,143216445,143228668,143238352	0.630854
spleen_female_adult_53_years	chr7	85106805	85106808	85106805	-	RAMPAGE_only	129	134	231	13.721177	6.304424	chr7	85106637	85107002	LTR|ERVL-MaLR|THE1D	-	chr7	84995552	85109652	STRG.55664.3	-	84995552,85006801,85012781,85015058,85018251,85020232,85022390,85036888,85040672,85042170,85055716,85065423,85068190,85072961,85081516,85097804,85106720	84999865,85006941,85012846,85015216,85018293,85020321,85022613,85037033,85040742,85042285,85055859,85065552,85068284,85073081,85081579,85097965,85109652	0.818182
spleen_female_adult_53_years	chr9	84368670	84368710	84368670	-	High_confidence	4	4	15	0.890985	3.664498	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.800000
spleen_female_adult_53_years	chr15	80059908	80059926	80059918	+	High_confidence	9	9	24	1.425577	4.053509	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	1.000000
spleen_female_adult_53_years	chr1	12171809	12171810	12171809	+	RAMPAGE_only	6	6	9	0.534591	2.500000	chr1	12171838	12171885	LINE|L2|L2a	+	chr1	12167002	12209228	TNFRSF1B|ENST00000376259.6	+	12167002,12188795,12190956,12191773,12192430,12192862,12193954,12194583,12201966,12206739	12167169,12188895,12191085,12191923,12192524,12193098,12194032,12194618,12202171,12209228	0.666667
spleen_female_adult_53_years	chr1	36476283	36476301	36476283	-	High_confidence	4	4	11	0.653389	2.921928	chr1	36476212	36476442	SINE|MIR|MIR	+	chr1	36466043	36476327	CSF3R|ENST00000480825.6	-	36466043,36467557,36467821,36469651,36471432,36472237,36472516,36473718,36475376	36467311,36467651,36469257,36469840,36472139,36472391,36473622,36473887,36476327	0.909091
spleen_female_adult_53_years	chr7	104961990	104962010	104961990	+	RAMPAGE_only	2	2	6	0.356394	2.584963	chr7	104961828	104962120	LTR|ERVL|LTR67B	-	chr7	104983639	104988295	STRG.56725.1	+	104983639	104988295	0.666667
spleen_female_adult_53_years	chr10	72355126	72355146	72355145	-	High_confidence	5	5	15	0.890985	3.272906	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
spleen_female_adult_53_years	chr15	58851957	58851958	58851957	+	RAMPAGE_only	4	4	7	0.415793	2.521641	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	0.857143
spleen_female_adult_53_years	chr6	106098084	106098089	106098088	+	RAMPAGE_only	10	11	16	0.950385	3.077820	chr6	106098107	106098187	LINE|L2|L2	+	chr6	106086319	106109938	STRG.49179.5	+	106086319,106088200,106104824,106106370,106106910	106086595,106099552,106105933,106106499,106109938	1.000000
spleen_female_adult_53_years	chr3	30623257	30623258	30623257	-	RAMPAGE_only	7	7	7	0.415793	2.521641	chr3	30623084	30623241	SINE|MIR|MIRc	-	chr3	30606747	30607216	STRG.23182.1	-	30606747	30607216	1.000000
spleen_female_adult_53_years	chr4	39627120	39627121	39627120	-	High_confidence	601	617	649	38.549972	5.918678	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.902928
spleen_female_adult_53_years	chr10	15035399	15035442	15035429	-	RAMPAGE_only	7	7	22	1.306779	3.484184	chr10	15035279	15035640	LTR|ERVL-MaLR|MSTB	-	chr10	15015369	15021863	DCLRE1CP1|ENST00000454630.1	-	15015369,15016903,15017226,15018050,15021803	15015471,15017044,15017291,15018152,15021863	0.590909
spleen_female_adult_53_years	chr6	127330818	127330861	127330818	-	High_confidence	2	2	10	0.593990	2.921928	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	1.000000
spleen_female_adult_53_years	chr18	54234955	54234998	54234971	-	RAMPAGE_only	11	11	48	2.851154	4.969274	chr18	54234703	54235088	LTR|ERVL|LTR79	-	chr18	54151600	54224788	MBD2|ENST00000256429.7	-	54151600,54159764,54164522,54166075,54188873,54204997,54224017	54155311,54159903,54164700,54166166,54189011,54205157,54224788	0.833333
spleen_female_adult_53_years	chr2	232816731	232816740	232816731	+	RAMPAGE_only	10	10	17	1.009784	3.625000	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.764706
spleen_female_adult_53_years	chr5	128082243	128082276	128082275	-	High_confidence	3	3	10	0.593990	3.121928	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	128024026	128082960	LINC01184|ENST00000508878.5	-	128024026,128061143,128076946,128081972,128082734	128024298,128061244,128077093,128082194,128082960	0.700000
spleen_female_adult_53_years	chr4	184537514	184537567	184537538	-	High_confidence	11	16	44	2.613557	4.358447	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184532093	184537762	STRG.36826.1	-	184532093	184537762	0.863636
spleen_female_adult_53_years	chr8	28779715	28779725	28779724	-	RAMPAGE_only	3	4	9	0.534591	2.750000	chr8	28779292	28779796	LTR|ERV1|MER90a	+	chr8	28771005	28776271	INTS9|ENST00000520005.1	-	28771005,28775758	28771080,28776271	0.666667
spleen_female_adult_53_years	chr15	32613831	32613852	32613832	+	High_confidence	6	10	21	1.247380	3.846439	chr15	32613860	32614055	LINE|CR1|L3	+	chr15	32613732	32615111	AC123768.2|ENST00000500941.2	+	32613732,32614108,32614739	32613998,32614202,32615111	0.666667
spleen_female_adult_53_years	chr19	17197856	17197857	17197856	+	High_confidence	25	27	28	1.663173	3.986188	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	0.964286
spleen_female_adult_53_years	chr1	248817100	248817112	248817100	-	RAMPAGE_only	2	2	7	0.415793	2.521641	chr1	248817066	248817156	SINE|MIR|MIRb	-	chr1	248810445	248825366	SH3BP5L|NM_001322462.1	-	248810445,248812988,248814448,248814710,248816533,248816821,248820402,248821146,248824752	248812370,248813162,248814610,248814877,248816662,248816884,248820912,248821261,248825366	1.000000
spleen_female_adult_53_years	chr19	49867874	49867877	49867876	-	High_confidence	7	11	13	0.772187	3.085055	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49863730	49867880	PNKP|ENST00000636214.1	-	49863730,49863963,49864178,49864323,49865126,49866398,49867053,49867678	49863760,49864071,49864236,49864403,49865242,49866445,49867217,49867880	0.538462
spleen_female_adult_53_years	chr1	31579402	31579407	31579406	-	High_confidence	10	13	25	1.484976	4.293661	chr1	31579314	31579442	SINE|MIR|MIRb	+	chr1	31578012	31579567	STRG.1402.1	-	31578012	31579567	0.920000
spleen_female_adult_53_years	chr19	32991450	32991453	32991452	-	High_confidence	9	15	18	1.069183	3.263933	chr19	32991175	32991482	SINE|Alu|AluSc8	+	chr19	32979790	32991417	RHPN2|ENST00000588683.1	-	32979790,32990513,32991333	32980256,32990669,32991417	0.944444
spleen_female_adult_53_years	chr2	102020883	102020903	102020883	+	RAMPAGE_only	2	2	8	0.475192	3.000000	chr2	102020844	102021022	DNA|hAT-Charlie|MER5A	+	chr2	102009561	102028414	STRG.16407.8	+	102009561,102015870,102019637,102024532,102026110,102028225	102009826,102016051,102022249,102024668,102026253,102028414	1.000000
spleen_female_adult_53_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	7	7	8	0.475192	2.807355	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103125016	103193272	STRG.75445.11	-	103125016,103174857,103176485,103193235	103139479,103174982,103181328,103193272	0.625000
spleen_female_adult_53_years	chr4	102431228	102431250	102431247	-	High_confidence	11	11	25	1.484976	3.969002	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.680000
spleen_female_adult_53_years	chr17	64320554	64320574	64320554	-	RAMPAGE_only	3	3	9	0.534591	2.750000	chr17	64320358	64320776	LINE|L2|L2c	+	chr17	64319414	64390878	PECAM1|NM_000442.4	-	64319414,64329699,64341633,64348259,64350379,64352389,64353490,64354932,64356110,64360139,64363148,64369749,64375050,64377823,64390488,64390601	64323845,64329722,64341690,64348322,64350433,64352463,64353518,64355040,64356398,64360415,64363397,64370025,64375356,64378117,64390515,64390878	0.888889
spleen_female_adult_53_years	chr12	8672518	8672519	8672518	-	RAMPAGE_only	21	22	26	1.544375	4.334963	chr12	8672365	8672715	LTR|ERVL-MaLR|THE1A	-	chr12	8645942	8662888	MFAP5|NM_001297710.1	-	8645942,8649500,8650501,8654436,8655414,8655785,8662046,8662626	8648203,8649574,8650589,8654481,8655447,8655830,8662106,8662888	0.730769
spleen_female_adult_53_years	chr11	64226142	64226180	64226142	-	High_confidence	102	104	506	30.055911	6.636931	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226141	STRG.78776.3	-	64223855,64224099,64224284,64224542,64224800,64225785,64226049	64223967,64224210,64224341,64224717,64225580,64225869,64226141	0.954545
spleen_female_adult_53_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	11	11	11	0.653389	3.277613	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
spleen_female_adult_53_years	chr9	89479889	89479890	89479889	-	High_confidence	724	729	741	44.014683	5.219899	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89362238	89479890	SEMA4D|ENST00000537934.5	-	89362238,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89418362,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89418437,89455953,89479890	0.959514
spleen_female_adult_53_years	chr9	128625577	128625605	128625577	+	RAMPAGE_only	2	2	8	0.475192	2.500000	chr9	128625247	128625624	LINE|L2|L2c	-	chr9	128605326	128633646	STRG.70694.6	+	128605326,128607603,128607851,128608129,128608873,128609121,128611713,128612108,128613380,128615631,128617639,128617986,128618870,128621157,128624327,128625102,128625768,128626390,128627385,128630320,128632126,128632430,128632571,128632807,128633208	128605477,128607703,128608049,128608276,128608977,128609284,128611845,128612246,128613485,128615840,128617760,128618108,128619003,128621256,128624487,128625179,128625978,128626687,128627498,128630375,128632323,128632484,128632718,128632955,128633646	0.875000
spleen_female_adult_53_years	chr19	10555127	10555148	10555127	-	RAMPAGE_only	6	7	12	0.712788	2.845351	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	0.916667
spleen_female_adult_53_years	chr19	54616933	54616968	54616967	+	High_confidence	112	121	252	14.968556	6.097209	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54616929	54637556	LILRB1|NM_006669.6	+	54616929,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637556	0.988095
spleen_female_adult_53_years	chr10	35449700	35449735	35449700	+	RAMPAGE_only	65	66	416	24.709998	6.885347	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.829327
spleen_female_adult_53_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	13	13	13	0.772187	3.546594	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.923077
spleen_female_adult_53_years	chr2	7023741	7023779	7023778	+	RAMPAGE_only	5	7	22	1.306779	3.970573	chr2	7023743	7023814	SINE|MIR|MIRc	-	chr2	6996939	7068286	RNF144A|ENST00000432850.1	+	6996939,7014453,7014711,7020472,7024368,7030125,7068215	6997061,7014558,7014772,7020680,7024516,7030215,7068286	0.681818
spleen_female_adult_53_years	chr1	2594091	2594092	2594091	-	High_confidence	6	6	9	0.534591	2.750000	chr1	2593981	2594096	SINE|MIR|MIRb	-	chr1	2592654	2594073	MMEL1|ENST00000469962.1	-	2592654,2592832,2593813	2592720,2592966,2594073	0.666667
spleen_female_adult_53_years	chrX	283506	283509	283506	+	High_confidence	3	4	8	0.475192	2.750000	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.750000
spleen_female_adult_53_years	chr8	24387516	24387534	24387533	-	High_confidence	9	9	19	1.128582	3.932138	chr8	24386908	24387825	LTR|ERVK|HERVK22-int	-	chr8	24295813	24387515	AC120193.1|ENST00000518988.5	-	24295813,24296153,24300884,24387160	24296057,24296250,24300929,24387515	0.631579
spleen_female_adult_53_years	chr1	20685269	20685298	20685269	-	High_confidence	3	3	10	0.593990	3.121928	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	1.000000
spleen_female_adult_53_years	chr2	73072200	73072234	73072233	-	High_confidence	3	4	11	0.653389	3.121928	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.545455
spleen_female_adult_53_years	chr8	140458293	140458303	140458293	-	High_confidence	2	2	6	0.356394	2.584963	chr8	140458275	140458328	LINE|L2|L2b	+	chr8	139727724	140458579	TRAPPC9|NM_031466.7	-	139727724,139731978,139885878,139910146,139988725,140023936,140221458,140252776,140275657,140283888,140287607,140290992,140300468,140311247,140360049,140370963,140397619,140405576,140426614,140435111,140439051,140450789,140458280	139731228,139732202,139885969,139910300,139988836,140024079,140221583,140252929,140275821,140284021,140287734,140291078,140300614,140311374,140360193,140371180,140397745,140405698,140426641,140435240,140439197,140451383,140458579	1.000000
spleen_female_adult_53_years	chr19	48727420	48727421	48727420	-	RAMPAGE_only	12	13	14	0.831586	3.238901	chr19	48727220	48727380	SINE|MIR|MIR3	-	chr19	48720584	48740713	RASIP1|NM_017805.2	-	48720584,48721853,48724336,48724716,48726784,48727006,48727392,48728936,48735195,48738959,48740145,48740520	48720997,48722001,48724509,48724960,48726888,48727158,48727430,48729590,48735551,48739645,48740286,48740713	0.928571
spleen_female_adult_53_years	chr1	25562793	25562794	25562793	+	High_confidence	34	34	45	2.672956	4.963746	chr1	25562741	25562929	SINE|MIR|MIRb	+	chr1	25562815	25567000	LDLRAP1|ENST00000484476.5	+	25562815,25563660,25565172,25566847	25563153,25563791,25565207,25567000	0.777778
spleen_female_adult_53_years	chr2	240022172	240022182	240022172	-	RAMPAGE_only	10	11	20	1.187981	2.865577	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.900000
spleen_female_adult_53_years	chr9	37187476	37187484	37187483	+	RAMPAGE_only	9	9	29	1.722572	3.988351	chr9	37187210	37187548	DNA|hAT-Charlie|MER1B	-	chr9	37144931	37356980	ZCCHC7|ENST00000488607.5	+	37144931,37147361,37302187,37304187,37305543,37327798,37349356,37354709,37356834	37144997,37147445,37302231,37304313,37305714,37327834,37349452,37354824,37356980	0.827586
spleen_female_adult_53_years	chr14	103931833	103931840	103931833	+	High_confidence	30	31	45	2.672956	4.905975	chr14	103931646	103932201	LTR|ERVL-MaLR|MLT1E2	+	chr14	103931600	103966828	STRG.97097.6	+	103931600,103955663,103963078,103965332,103966708	103931953,103955770,103963176,103965554,103966828	0.777778
spleen_female_adult_53_years	chr1	111473762	111473794	111473767	+	High_confidence	11	11	46	2.732356	4.941934	chr1	111473535	111473833	SINE|Alu|AluYm1	+	chr1	111473791	111478512	C1orf162|ENST00000343534.9	+	111473791,111476017,111476797,111477333,111477650,111477982	111474030,111476065,111476867,111477428,111477775,111478512	0.826087
spleen_female_adult_53_years	chr10	96620372	96620465	96620372	-	High_confidence	15	15	58	3.445144	4.804198	chr10	96620235	96620332	LINE|L2|L2b	-	chr10	96603739	96620411	PIK3AP1|ENST00000489982.1	-	96603739,96609711,96616638,96620351	96604049,96609867,96616711,96620411	0.741379
spleen_female_adult_53_years	chr7	100349884	100349885	100349884	+	RAMPAGE_only	13	13	14	0.831586	3.700440	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336242	100351900	STRG.56292.19	+	100336242,100338178,100338772,100345864,100349716,100351251	100336337,100338264,100338889,100345968,100349887,100351900	0.785714
spleen_female_adult_53_years	chr17	41108243	41108282	41108262	+	High_confidence	16	23	141	8.375264	5.076158	chr17	41107954	41108546	LTR|ERV1|MER4-int	+	chr17	41108263	41110275	STRG.106704.1	+	41108263,41110003	41108379,41110275	0.886525
spleen_female_adult_53_years	chr16	11774370	11774371	11774370	-	High_confidence	8	8	11	0.653389	2.646439	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	0.545455
spleen_female_adult_53_years	chr14	101120839	101120864	101120839	+	High_confidence	5	5	10	0.593990	3.169925	chr14	101120596	101120905	LTR|ERVL-MaLR|MLT1J2	-	chr14	101120855	101123542	LINC02285|ENST00000557121.1	+	101120855,101122888	101121144,101123542	0.500000
spleen_female_adult_53_years	chr1	24666746	24666757	24666746	+	High_confidence	3	3	7	0.415793	2.584963	chr1	24666479	24666789	SINE|Alu|AluSx1	+	chr1	24666554	24669264	SRRM1|ENST00000489130.2	+	24666554,24669122	24666925,24669264	0.571429
spleen_female_adult_53_years	chr10	28335269	28335296	28335269	-	High_confidence	73	93	261	15.503148	4.677783	chr10	28334857	28335233	LTR|ERVL-MaLR|MLT1F	-	chr10	28332655	28335298	STRG.72058.3	-	28332655	28335298	0.954023
spleen_female_adult_53_years	chr6	2968829	2968830	2968829	-	RAMPAGE_only	7	7	9	0.534591	2.503258	chr6	2968783	2968841	LINE|L1|HAL1	-	chr6	2948162	2970743	SERPINB6|ENST00000644178.1	-	2948162,2948913,2953043,2954591,2955523,2959167,2966399	2948699,2949069,2953186,2954709,2955670,2959342,2970743	1.000000
spleen_female_adult_53_years	chr6	33301527	33301560	33301527	-	RAMPAGE_only	6	6	22	1.306779	3.913977	chr6	33301291	33301595	SINE|Alu|AluSx	+	chr6	33299693	33314387	TAPBP|ENST00000434618.6	-	33299693,33303954,33304127,33304296,33304988,33313216,33313693,33314004	33301771,33303989,33304217,33304638,33305387,33313477,33313864,33314387	1.000000
spleen_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	11	11	11	0.653389	3.027169	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
spleen_female_adult_53_years	chr1	36475909	36475915	36475914	-	High_confidence	10	10	16	0.950385	3.640224	chr1	36475856	36476048	DNA|hAT-Blackjack|MER63A	-	chr1	36466043	36476327	CSF3R|ENST00000480825.6	-	36466043,36467557,36467821,36469651,36471432,36472237,36472516,36473718,36475376	36467311,36467651,36469257,36469840,36472139,36472391,36473622,36473887,36476327	0.937500
spleen_female_adult_53_years	chr2	128173725	128173726	128173725	+	RAMPAGE_only	4	4	7	0.415793	2.521641	chr2	128173483	128173742	LINE|L1|L1ME1	-	chr2	128091310	128195677	UGGT1|ENST00000259253.10	+	128091310,128097428,128103931,128107937,128109633,128113083,128115123,128116264,128120355,128121198,128123185,128127360,128129028,128133140,128134875,128138716,128143093,128145802,128152783,128155488,128156391,128157251,128159513,128160459,128161137,128164729,128170287,128171204,128172572,128173780,128174772,128176813,128177831,128178467,128179785,128180889,128182129,128183674,128186682,128187448,128189716	128091415,128097564,128104014,128108068,128109746,128113258,128115220,128116343,128120456,128121298,128123246,128127452,128129179,128133260,128134961,128138852,128143225,128145967,128152904,128155587,128156415,128157346,128159720,128160591,128161268,128164825,128170390,128171284,128172762,128173939,128174858,128176898,128177920,128178569,128179870,128181072,128182290,128183789,128186799,128187614,128195677	0.571429
spleen_female_adult_53_years	chr2	230417604	230417649	230417648	+	High_confidence	5	5	15	0.890985	3.373557	chr2	230417018	230417854	LINE|L1|L1ME3G	-	chr2	230416755	230470530	SP100|ENST00000409897.5	+	230416755,230417590,230440475,230442936,230444177,230446818,230449087,230449560,230450171,230461261,230462434,230464066,230466300,230467119,230469042,230470014	230416881,230417665,230440557,230443099,230444346,230446902,230449150,230449710,230450255,230461414,230462518,230464150,230466354,230467215,230469096,230470530	1.000000
spleen_female_adult_53_years	chr6	31587201	31587275	31587274	+	High_confidence	137	146	552	32.788266	5.723235	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	0.856884
spleen_female_adult_53_years	chrX	5726228	5726242	5726228	-	High_confidence	4	4	14	0.831586	3.334679	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.785714
spleen_female_adult_53_years	chr1	244815758	244815772	244815771	+	High_confidence	11	11	20	1.187981	3.616349	chr1	244815533	244815948	LTR|ERV1|MER41A	+	chr1	244815794	244817539	STRG.11143.1	+	244815794	244817539	0.900000
spleen_female_adult_53_years	chr19	55255760	55255769	55255760	-	High_confidence	16	16	27	1.603774	4.161978	chr19	55255671	55256025	LINE|L2|L2b	+	chr19	55241476	55255769	STRG.114799.3	-	55241476,55242165,55242375,55245119,55245264,55245491,55246876,55255674	55241639,55242279,55242488,55245185,55245402,55245678,55247109,55255769	0.814815
spleen_female_adult_53_years	chr5	119420314	119420348	119420314	+	RAMPAGE_only	4	4	15	0.890985	3.906891	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.533333
spleen_female_adult_53_years	chr15	75007499	75007521	75007504	+	RAMPAGE_only	6	6	20	1.187981	3.616349	chr15	75007388	75007556	SINE|Alu|AluJo	-	chr15	75011657	75018467	SCAMP5|ENST00000564779.5	+	75011657,75011791,75012676,75016592,75017869,75018417	75011680,75011846,75012805,75016749,75017971,75018467	0.700000
spleen_female_adult_53_years	chr11	57092141	57092253	57092141	-	High_confidence	257	300	993	58.983239	8.071607	chr11	57091950	57092364	LINE|L1|L1PA10	-	chr11	56974210	57092236	STRG.78294.3	-	56974210,57029060,57091973	57015348,57045344,57092236	0.552870
spleen_female_adult_53_years	chr1	33021455	33021456	33021455	-	RAMPAGE_only	8	8	10	0.593990	2.725481	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.900000
spleen_female_adult_53_years	chr6	168093055	168093063	168093062	-	High_confidence	3	4	8	0.475192	2.521641	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.875000
spleen_female_adult_53_years	chr9	114394412	114394413	114394412	-	High_confidence	20	22	23	1.366178	3.879664	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	0.956522
spleen_female_adult_53_years	chr11	75479466	75479476	75479466	-	High_confidence	5	6	10	0.593990	2.503258	chr11	75479439	75479500	SINE|MIR|MIR	-	chr11	75434639	75479403	GDPD5|ENST00000527820.5	-	75434639,75436935,75439878,75441162,75441645,75442362,75443135,75444412,75448976,75449516,75449884,75452815,75455203,75456756,75457692,75462785,75477618,75479243	75435655,75437048,75439961,75441310,75441803,75442581,75443286,75444495,75449122,75449610,75449983,75452970,75455354,75456816,75457786,75462889,75477795,75479403	0.700000
spleen_female_adult_53_years	chr4	79492409	79492410	79492409	+	High_confidence	8	8	11	0.653389	3.321928	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492415	79576460	LINC00989|ENST00000508174.5	+	79492415,79493151,79513784,79575140	79492623,79493585,79513902,79576460	0.818182
spleen_female_adult_53_years	chr1	204870055	204870100	204870055	+	High_confidence	9	9	30	1.781971	4.066109	chr1	204869798	204870066	LINE|L1|L1M5	-	chr1	204870830	205018371	NFASC|ENST00000404076.5	+	204870830,204920631,204944225,204952010,204954187,204954828,204957655,204968248,204968797,204970615,204973275,204974178,204974656,204975270,204976670,204978967,204979361,204980369,204981797,204984026,204985909,204987417,204988632,204991291,205009556,205012796,205016307	204871053,204920740,204944406,204952116,204954384,204954951,204957826,204968360,204968982,204970747,204973419,204974290,204974823,204975418,204976795,204979069,204979559,204980440,204982020,204984142,204986114,204987540,204988806,204991306,205009688,205012866,205018371	0.733333
spleen_female_adult_53_years	chr6	41277777	41277778	41277777	-	RAMPAGE_only	4	4	7	0.415793	2.807355	chr6	41277759	41277900	LTR|ERVL|LTR16C	+	chr6	41275985	41281234	TREM1|ENST00000589695.1	-	41275985,41280960	41276230,41281234	0.714286
spleen_female_adult_53_years	chr13	50029407	50029408	50029407	-	RAMPAGE_only	9	9	9	0.534591	2.725481	chr13	50029170	50029500	LINE|L2|L2c	+	chr13	49982422	50048871	STRG.90826.9	-	49982422,49993792,49997073,50027362	49991364,49993961,49997419,50048871	0.888889
spleen_female_adult_53_years	chr4	81154211	81154248	81154221	-	High_confidence	13	14	45	2.672956	4.424831	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.955556
spleen_female_adult_53_years	chr6	109325708	109325743	109325708	+	High_confidence	15	15	36	2.138365	4.627987	chr6	109324446	109326053	LINE|L2|L2a	-	chr6	109325732	109341423	STRG.49430.1	+	109325732,109329002,109336367,109337395,109338447,109340901,109341298	109325795,109329112,109336517,109337449,109338615,109341054,109341423	0.861111
spleen_female_adult_53_years	chr8	99892036	99892057	99892056	-	RAMPAGE_only	33	33	66	3.920336	4.148160	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
spleen_female_adult_53_years	chr12	9645304	9645305	9645304	+	RAMPAGE_only	6	6	8	0.475192	2.500000	chr12	9645124	9645474	LTR|ERVL-MaLR|THE1B	+	chr12	9642871	9657070	AC010186.4|ENST00000573622.1	+	9642871,9653682,9655872,9656920	9643103,9653808,9655979,9657070	0.625000
spleen_female_adult_53_years	chr10	33116806	33116820	33116806	-	High_confidence	6	6	15	0.890985	2.638460	chr10	33116657	33116766	SINE|MIR|MIR1_Amn	-	chr10	33096256	33116672	AL121748.1|ENST00000414308.1	-	33096256,33116470	33096606,33116672	0.666667
spleen_female_adult_53_years	chrX	5726324	5726325	5726324	-	High_confidence	13	18	18	1.069183	3.683542	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.888889
spleen_female_adult_53_years	chr3	134595263	134595264	134595263	+	RAMPAGE_only	6	6	6	0.356394	2.584963	chr3	134595069	134595442	LTR|ERVL-MaLR|THE1C	+	chr3	134597823	134628104	EPHB1|ENST00000472904.5	+	134597823,134615183,134627939	134597984,134615438,134628104	0.500000
spleen_female_adult_53_years	chr17	68413723	68413753	68413752	+	High_confidence	3	3	9	0.534591	2.500000	chr17	68408123	68414142	LINE|L1|L1PA3	-	chr17	68413739	68428763	AC007780.1|ENST00000592030.1	+	68413739,68413910,68420188,68428636	68413795,68414182,68420506,68428763	0.666667
spleen_female_adult_53_years	chr13	48492622	48492656	48492622	-	High_confidence	7	10	27	1.603774	4.363713	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.740741
spleen_female_adult_53_years	chr2	37929500	37929502	37929500	+	High_confidence	2	4	7	0.415793	2.584963	chr2	37929546	37929613	LINE|L1|HAL1M8	+	chr2	37928758	38017744	RMDN2|ENST00000406384.5	+	37928758,37929261,37974039,37975211,37981282,37989540,37991219,37997415,38003990,38004135,38017185	37928936,37929729,37974214,37975314,37981343,37989616,37991297,37997514,38004044,38004216,38017744	0.857143
spleen_female_adult_53_years	chr9	33068824	33068877	33068840	-	RAMPAGE_only	4	5	17	1.009784	2.905639	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.823529
spleen_female_adult_53_years	chr16	28688553	28688604	28688553	+	High_confidence	3	3	24	1.425577	3.105389	chr16	28688394	28688869	LTR|ERVL|LTR41B	+	chr16	28688557	28735730	EIF3C|NM_001199142.1	+	28688557,28711656,28713700,28713908,28714320,28714635,28714818,28715306,28723163,28723447,28724321,28724657,28724918,28726604,28727020,28731828,28734519,28734777,28734931,28735172,28735430	28688828,28711787,28713766,28714098,28714446,28714690,28714928,28715434,28723323,28723551,28724463,28724783,28725012,28726795,28727245,28732192,28734679,28734843,28735019,28735335,28735730	1.000000
spleen_female_adult_53_years	chr2	29114149	29114174	29114149	+	High_confidence	6	6	28	1.663173	4.162295	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.892857
spleen_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	8	8	23	1.366178	4.229871	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.608696
spleen_female_adult_53_years	chr5	77088097	77088143	77088108	+	High_confidence	17	20	39	2.316562	4.436186	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.589744
spleen_female_adult_53_years	chr14	89486685	89486694	89486693	-	RAMPAGE_only	4	4	8	0.475192	2.750000	chr14	89486513	89486649	SINE|5S-Deu-L2|AmnSINE1	-	chr14	89161384	89417112	FOXN3|ENST00000557258.5	-	89161384,89180700,89280949,89350671,89411933,89416870	89162969,89180806,89281014,89350808,89412490,89417112	0.750000
spleen_female_adult_53_years	chr9	114345863	114345868	114345863	-	High_confidence	7	8	15	0.890985	3.324863	chr9	114345713	114345851	DNA|hAT-Charlie|Charlie17a	-	chr9	114336130	114346774	AKNA|ENST00000492875.1	-	114336130,114341532,114342008,114343707,114346668	114337306,114341725,114342125,114346009,114346774	0.933333
spleen_female_adult_53_years	chr5	997302	997308	997302	-	High_confidence	3	3	8	0.475192	2.500000	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.875000
spleen_female_adult_53_years	chr5	177431710	177431721	177431710	+	High_confidence	25	25	53	3.148149	4.600444	chr5	177431745	177431876	SINE|MIR|MIRb	+	chr5	177431710	177442064	GRK6|ENST00000515666.5	+	177431710,177432232,177432705,177433146,177433346,177433535,177433913,177434901,177435031,177436072,177436392,177440699,177440918,177441736	177432107,177432310,177432806,177433239,177433410,177433676,177434104,177434939,177435121,177436281,177436530,177440837,177441053,177442064	0.943396
spleen_female_adult_53_years	chr12	128857589	128857609	128857599	+	RAMPAGE_only	12	12	37	2.197764	4.993237	chr12	128857606	128857812	LTR|Gypsy|MamGypLTR1b	+	chr12	128853535	128984956	STRG.89339.1	+	128853535,128875913,128888638,128899235,128912423,128914932,128926358,128927104,128945325,128947337,128957544,128982928,128984686	128853649,128876062,128888744,128899287,128912460,128914989,128926454,128927154,128945369,128947458,128957643,128984665,128984956	0.513514
spleen_female_adult_53_years	chr16	29745246	29745271	29745246	+	High_confidence	9	9	49	2.910553	4.868107	chr16	29745050	29745346	SINE|Alu|AluJb	+	chr16	29745246	29748299	AC009133.3|ENST00000565600.1	+	29745246,29746782	29745385,29748299	0.591837
spleen_female_adult_53_years	chr5	138369939	138369978	138369977	+	RAMPAGE_only	3	3	13	0.772187	3.392747	chr5	138369795	138370010	SINE|MIR|MIRc	-	chr5	138372673	138437028	KDM3B|ENST00000510866.5	+	138372673,138375092,138377719,138379583,138381515,138386021,138386288,138391012,138393170,138398177,138399859,138415131,138417482,138418952,138420705,138424074,138425410,138426974,138427188,138427966,138429825,138430248,138431424,138435619	138372841,138375206,138377825,138379708,138381590,138386190,138386621,138392261,138393372,138398392,138400012,138415239,138417610,138419232,138420962,138424341,138425582,138427065,138427319,138428086,138429965,138430425,138431559,138437028	1.000000
spleen_female_adult_53_years	chr4	48805141	48805165	48805159	+	High_confidence	9	12	25	1.484976	3.970176	chr4	48805071	48805471	LTR|ERVL-MaLR|MLT1F	+	chr4	48805211	48850036	OCIAD1|ENST00000504654.5	+	48805211,48830576,48832619,48833400,48842635,48848398,48849946	48805330,48830673,48832682,48833481,48842689,48848446,48850036	0.520000
spleen_female_adult_53_years	chr16	31118733	31118790	31118789	+	RAMPAGE_only	4	4	23	1.366178	4.001823	chr16	31118415	31118797	LINE|L2|L2c	+	chr16	31117696	31121118	KAT8|ENST00000539683.2	+	31117696,31120185,31120338	31117892,31120260,31121118	0.608696
spleen_female_adult_53_years	chr5	109383499	109383509	109383499	-	High_confidence	2	2	8	0.475192	2.750000	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
spleen_female_adult_53_years	chr19	49086520	49086547	49086520	+	High_confidence	56	56	88	5.227115	5.331626	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49108479	STRG.114339.6	+	49086523,49090290,49090465,49098426,49098641,49101389,49102113,49103531,49107624,49107794	49086561,49090353,49090520,49098491,49098704,49101471,49103457,49104735,49107712,49108479	0.943182
spleen_female_adult_53_years	chr5	39134993	39135002	39134993	-	RAMPAGE_only	3	4	10	0.593990	2.725481	chr5	39134954	39135006	SINE|tRNA-RTE|MamSINE1	-	chr5	39107283	39203027	FYB1|ENST00000515010.5	-	39107283,39108230,39110355,39118873,39119534,39122335,39124252,39127740,39130589,39134207,39134854,39137599,39138656,39139232,39141094,39153447,39201825	39107465,39108262,39110389,39119036,39119634,39122402,39124278,39127807,39130612,39134349,39135014,39137720,39138691,39139252,39141141,39153604,39203027	0.600000
spleen_female_adult_53_years	chr12	112002550	112002559	112002550	-	RAMPAGE_only	14	14	29	1.722572	4.004364	chr12	112002418	112002584	SINE|Alu|AluSg4	+	chr12	111931298	112013131	TMEM116|ENST00000547878.6	-	111931298,111932585,111933885,111936691,111937159,111938160,111943264,111965594,111978735,111991757,112003799,112005256,112013001	111931827,111932659,111934030,111936830,111937243,111938210,111943369,111965759,111978787,111991889,112003863,112005303,112013131	0.517241
spleen_female_adult_53_years	chr14	50756702	50756771	50756702	-	RAMPAGE_only	4	4	26	1.544375	3.688722	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.846154
spleen_female_adult_53_years	chr13	99496638	99496639	99496638	-	RAMPAGE_only	15	15	15	0.890985	3.506891	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99486961	99499306	LINC01232|NR_110731.1	-	99486961,99496134,99496374,99497248,99498685	99487816,99496217,99496544,99497336,99499306	0.600000
spleen_female_adult_53_years	chr1	60825662	60825686	60825662	-	High_confidence	25	25	67	3.979735	5.327137	chr1	60825624	60825834	SINE|MIR|MIRb	-	chr1	60659630	60825584	AC099792.1|ENST00000423403.1	-	60659630,60662984,60729574,60732446,60733463,60825335	60661470,60663025,60729667,60732508,60733522,60825584	0.761194
spleen_female_adult_53_years	chr14	102235458	102235481	102235458	-	High_confidence	12	12	29	1.722572	3.479561	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	1.000000
spleen_female_adult_53_years	chr4	184266265	184266280	184266275	-	High_confidence	11	11	33	1.960168	4.171465	chr4	184265538	184266558	LINE|L1|L1M6	+	chr4	184265126	184266265	STRG.36797.1	-	184265126	184266265	0.909091
spleen_female_adult_53_years	chr11	940703	940740	940739	+	High_confidence	10	10	26	1.544375	4.209867	chr11	940287	940780	LINE|L1|HAL1	-	chr11	940734	972216	AP2A2|ENST00000527024.1	+	940734,959436,970168,972061	940894,959505,970311,972216	0.769231
spleen_female_adult_53_years	chr8	47360804	47360848	47360804	+	High_confidence	45	45	108	6.415096	5.443244	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47440397	SPIDR|ENST00000521918.6	+	47360818,47396375,47407860,47440322	47360949,47396626,47407961,47440397	0.842593
spleen_female_adult_53_years	chr4	2867795	2867851	2867835	+	High_confidence	10	10	45	2.672956	4.815459	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.955556
spleen_female_adult_53_years	chr7	7157343	7157371	7157370	+	RAMPAGE_only	5	5	16	0.950385	3.640224	chr7	7157366	7157507	LINE|L1|L1M8	-	chr7	7164087	7171239	STRG.52682.2	+	7164087	7171239	0.500000
spleen_female_adult_53_years	chr12	10306126	10306143	10306126	+	RAMPAGE_only	2	2	9	0.534591	2.750000	chr12	10305880	10306192	SINE|Alu|AluY	+	chr12	10304450	10317251	KLRD1|NM_001114396.1	+	10304450,10307977,10309387,10309625,10311463,10313409,10314672	10304547,10308084,10309480,10309688,10311615,10313513,10317251	0.888889
spleen_female_adult_53_years	chr8	24387619	24387642	24387619	-	High_confidence	65	67	104	6.177499	5.093036	chr8	24386908	24387825	LTR|ERVK|HERVK22-int	-	chr8	24295813	24387515	AC120193.1|ENST00000518988.5	-	24295813,24296153,24300884,24387160	24296057,24296250,24300929,24387515	0.865385
spleen_female_adult_53_years	chr5	95509594	95509600	95509599	-	RAMPAGE_only	5	6	9	0.534591	2.500000	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95466412	95499019	STRG.40037.5	-	95466412,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95498369	95467989,95469910,95478442,95482631,95484845,95491036,95494793,95497488,95499019	0.666667
spleen_female_adult_53_years	chr12	8681676	8681677	8681676	+	High_confidence	6	6	8	0.475192	2.521641	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.875000
spleen_female_adult_53_years	chr11	75162686	75162783	75162782	+	RAMPAGE_only	16	16	57	3.385745	4.862992	chr11	75162829	75162989	SINE|MIR|MIRb	+	chr11	75159798	75206400	SLCO2B1|NM_001145211.2	+	75159798,75162654,75163962,75165786,75169172,75169665,75172378,75188135,75193217,75196513,75200223,75202900,75203306,75204399	75159904,75162785,75164100,75165949,75169406,75169764,75172569,75188238,75193575,75196679,75200387,75202965,75203427,75206400	1.000000
spleen_female_adult_53_years	chr1	202471468	202471496	202471468	+	RAMPAGE_only	9	16	31	1.841370	4.548394	chr1	202470938	202471780	LINE|L1|L1ME3Cz	-	chr1	202462742	202581152	PPP1R12B|ENST00000491336.5	+	202462742,202488532,202493113,202495292,202495569,202496780,202558876,202562777,202564442,202567777,202569146,202580473	202463097,202488623,202493317,202495482,202495682,202496822,202558893,202562922,202564547,202567831,202569197,202581152	0.967742
spleen_female_adult_53_years	chr9	62840665	62840667	62840666	+	High_confidence	4	7	8	0.475192	2.500000	chr9	62840283	62843326	LINE|L1|L1PBa	-	chr9	62840644	62847206	PTGER4P2-CDK2AP2P2|NR_135010.1	+	62840644,62843804,62844618	62840802,62844182,62847206	0.875000
spleen_female_adult_53_years	chr11	108225493	108225499	108225493	+	High_confidence	5	5	13	0.772187	3.085055	chr11	108225464	108225775	SINE|Alu|AluSg	-	chr11	108224782	108231594	ATM|ENST00000638443.1	+	108224782,108227594,108227775,108229177,108231487	108224871,108227696,108227888,108230912,108231594	0.769231
spleen_female_adult_53_years	chr1	156252925	156252931	156252930	-	High_confidence	3	5	7	0.415793	2.807355	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.571429
spleen_female_adult_53_years	chr14	102370760	102370793	102370760	+	RAMPAGE_only	17	17	44	2.613557	5.033184	chr14	102370462	102370850	LINE|L2|L2b	-	chr14	102374678	102498224	STRG.96996.2	+	102374678,102407337,102408487,102414635,102424934,102428249,102431795,102434234,102438021,102440435,102443646,102445805,102449628,102450559,102452393,102465140,102496978,102497569,102498102	102376940,102407466,102408619,102414793,102425291,102428382,102432128,102435211,102438205,102440609,102443827,102445947,102449869,102450649,102452627,102465289,102497120,102497719,102498224	0.568182
spleen_female_adult_53_years	chr2	101998973	101998980	101998973	+	RAMPAGE_only	5	5	10	0.593990	3.321928	chr2	101998446	101999045	LTR|ERVL-MaLR|MLT1H1	-	chr2	101991959	102028414	STRG.16407.6	+	101991959,102009561,102015870,102019637,102022186,102024532,102026110,102028225	102008642,102009826,102016051,102019812,102022249,102024668,102026253,102028414	0.800000
spleen_female_adult_53_years	chr16	2759780	2759798	2759780	+	High_confidence	6	6	20	1.187981	3.426367	chr16	2759705	2759830	LINE|L2|L2c	-	chr16	2759746	2761810	SRRM2|ENST00000572278.1	+	2759746,2760300,2761560	2760008,2760499,2761810	0.500000
spleen_female_adult_53_years	chr12	7137085	7137098	7137097	+	RAMPAGE_only	4	4	11	0.653389	3.459432	chr12	7137127	7137213	SINE|MIR|MIR1_Amn	+	chr12	7138681	7143198	CLSTN3|ENST00000544584.1	+	7138681,7141241,7142085,7142868,7143162	7138816,7141404,7142139,7143026,7143198	0.818182
spleen_female_adult_53_years	chr12	14216610	14216636	14216610	+	High_confidence	3	3	10	0.593990	3.121928	chr12	14216543	14216731	LTR|ERV1|LTR12F	+	chr12	14216589	14221297	AC092112.1|ENST00000538329.1	+	14216589,14220861	14216793,14221297	0.900000
spleen_female_adult_53_years	chrX	147937542	147937543	147937542	+	RAMPAGE_only	6	6	9	0.534591	3.169925	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.126822.9	+	147940580,147943130,147945533,147948682	147940662,147945051,147945616,147950315	1.000000
spleen_female_adult_53_years	chr22	22336752	22336753	22336752	+	RAMPAGE_only	103	115	115	6.830889	5.556822	chr22	22331689	22336920	LINE|L1|L1PA8	+	chr22	22664437	22902169	STRG.119995.5	+	22664437,22758903,22899613,22900975	22664518,22759206,22899655,22902169	0.747826
spleen_female_adult_53_years	chr20	37382373	37382374	37382373	+	High_confidence	9	9	14	0.831586	3.238901	chr20	37382266	37382416	SINE|MIR|MIR	-	chr20	37382603	37405432	SRC|ENST00000358208.8	+	37382603,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.571429
spleen_female_adult_53_years	chrX	73837450	73837465	73837450	-	RAMPAGE_only	4	4	12	0.712788	3.188722	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
spleen_female_adult_53_years	chr10	124143741	124143763	124143741	-	High_confidence	10	11	42	2.494759	4.796614	chr10	124143407	124143809	LTR|ERVL-MaLR|MSTC	-	chr10	124132365	124143752	STRG.75995.1	-	124132365,124139295,124140063,124143470	124135346,124139488,124140471,124143752	0.809524
spleen_female_adult_53_years	chr10	46269605	46269610	46269606	-	High_confidence	42	70	145	8.612860	5.803984	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.862069
spleen_female_adult_53_years	chr11	108223501	108223520	108223501	+	High_confidence	2	2	8	0.475192	2.750000	chr11	108223533	108223589	SINE|MIR|MIR	+	chr11	108223115	108253996	STRG.81285.7	+	108223115,108227594,108227775,108229177,108235669,108243952,108244787,108246963,108248932,108250700,108251836,108252816,108253813	108224871,108227696,108227888,108229323,108235834,108244118,108245026,108247127,108249102,108251072,108252031,108252912,108253996	1.000000
spleen_female_adult_53_years	chr11	287314	287315	287314	+	High_confidence	7	7	9	0.534591	2.947703	chr11	287048	287379	LINE|L2|L2a	-	chr11	287507	288978	STRG.76292.2	+	287507,288618,288949	288492,288811,288978	1.000000
spleen_female_adult_53_years	chr10	124143589	124143638	124143589	-	High_confidence	14	14	37	2.197764	4.686147	chr10	124143407	124143809	LTR|ERVL-MaLR|MSTC	-	chr10	124138363	124143752	STRG.75995.2	-	124138363,124140063,124143470	124139488,124140471,124143752	0.621622
spleen_female_adult_53_years	chr22	41753604	41753613	41753604	+	High_confidence	8	8	26	1.544375	4.286790	chr22	41753560	41753778	SINE|Alu|AluSx	-	chr22	41753582	41758478	MEI1|ENST00000460702.1	+	41753582,41758364	41754046,41758478	0.884615
spleen_female_adult_53_years	chr9	129488868	129488931	129488930	+	High_confidence	7	7	37	2.197764	3.817995	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.972973
spleen_female_adult_53_years	chr15	75347037	75347076	75347042	+	High_confidence	9	9	54	3.207548	5.312826	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.740741
spleen_female_adult_53_years	chr8	125942481	125942482	125942481	+	High_confidence	16	17	17	1.009784	2.774397	chr8	125942190	125942570	LTR|ERV1|MER92C	+	chr8	125942490	125943358	STRG.64386.1	+	125942490	125943358	0.823529
spleen_female_adult_53_years	chr11	108225407	108225441	108225407	+	High_confidence	8	8	22	1.306779	3.283327	chr11	108225380	108225464	LINE|CR1|L3	+	chr11	108224782	108231594	ATM|ENST00000638443.1	+	108224782,108227594,108227775,108229177,108231487	108224871,108227696,108227888,108230912,108231594	0.954545
spleen_female_adult_53_years	chr13	59663448	59663449	59663448	-	RAMPAGE_only	20	25	27	1.603774	4.323856	chr13	59663298	59663622	LTR|ERVL-MaLR|THE1B	-	chr13	59660690	59665154	STRG.91121.1	-	59660690,59664674	59663842,59665154	0.925926
spleen_female_adult_53_years	chr7	45027046	45027081	45027046	+	High_confidence	3	3	9	0.534591	2.725481	chr7	45026988	45027096	SINE|MIR|MIR3	-	chr7	45027025	45076451	CCM2|ENST00000475551.5	+	45027025,45038252,45063917,45064462,45068442,45069825,45072725,45073459,45074269,45075776	45027797,45038426,45064001,45064646,45068579,45069961,45072783,45073571,45074408,45076451	1.000000
spleen_female_adult_53_years	chr9	76608877	76608904	76608903	+	RAMPAGE_only	183	183	441	26.194973	5.277425	chr9	76608739	76609168	LTR|ERVL-MaLR|MLT1F2	+	chr9	76605848	76621368	STRG.68185.7	+	76605848,76609248	76609153,76621368	0.922902
spleen_female_adult_53_years	chr2	102428792	102428795	102428792	+	RAMPAGE_only	4	5	9	0.534591	2.947703	chr2	102426667	102432316	LINE|L1|L1MA4	-	chr2	102432288	102452384	STRG.16415.16	+	102432288,102443199,102445188,102447069,102450847,102451765	102441377,102443323,102445340,102447207,102451021,102452384	0.666667
spleen_female_adult_53_years	chr14	95664765	95664851	95664816	+	High_confidence	23	23	57	3.385745	5.350262	chr14	95664736	95664975	LTR|ERVL-MaLR|MLT1H	-	chr14	95664861	95670414	TCL6|ENST00000486671.1	+	95664861,95668125	95665076,95670414	0.736842
spleen_female_adult_53_years	chr3	114624984	114625034	114625006	-	High_confidence	19	23	100	5.939903	5.886112	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.710000
spleen_female_adult_53_years	chr12	6493553	6493570	6493553	-	High_confidence	2	2	8	0.475192	3.000000	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	0.875000
spleen_female_adult_53_years	chr18	50843101	50843104	50843101	-	RAMPAGE_only	8	8	13	0.772187	3.251629	chr18	50842925	50843332	LTR|ERVL|MLT2D	-	chr18	50798376	50825402	MRO|ENST00000428869.6	-	50798376,50800035,50801348,50805153,50806703,50809301,50816123,50819580,50825308	50799390,50800143,50801504,50805336,50806850,50809404,50816162,50819702,50825402	0.923077
spleen_female_adult_53_years	chr10	17216308	17216350	17216310	-	RAMPAGE_only	7	9	17	1.009784	2.780639	chr10	17216274	17216354	LTR|ERV1|HERVIP10FH-int	+	chr10	17214238	17226898	VIM-AS1|ENST00000437232.5	-	17214238,17216166,17217601,17226855	17215364,17216274,17217675,17226898	0.823529
spleen_female_adult_53_years	chr12	123390760	123390761	123390760	+	High_confidence	4	4	7	0.415793	2.584963	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.857143
spleen_female_adult_53_years	chr11	60327369	60327382	60327369	+	High_confidence	2	2	8	0.475192	2.750000	chr11	60327087	60327483	LTR|ERVL-MaLR|MLT1A1	+	chr11	60327265	60341769	STRG.78515.1	+	60327265,60334881,60337740,60339865,60340775	60327408,60335042,60337947,60339964,60341769	1.000000
spleen_female_adult_53_years	chr12	53464773	53464816	53464815	+	RAMPAGE_only	5	5	21	1.247380	3.784184	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479614	STRG.85748.14	+	53462513,53464759,53465931,53467220,53467804,53471637,53479405	53462567,53464852,53465973,53467293,53468832,53471807,53479614	0.952381
spleen_female_adult_53_years	chr1	20686381	20686404	20686403	-	High_confidence	7	7	17	1.009784	3.263933	chr1	20686389	20686457	SINE|MIR|MIR3	-	chr1	20670428	20686375	KIF17|ENST00000498225.1	-	20670428,20671937,20682652,20684808,20686045,20686343	20670488,20672196,20682884,20685020,20686126,20686375	1.000000
spleen_female_adult_53_years	chr12	60119442	60119515	60119442	+	High_confidence	41	45	351	20.849060	7.198371	chr12	60119277	60119646	LINE|L2|L2b	-	chr12	60119380	60178793	STRG.86061.1	+	60119380,60125247,60127181,60175665	60119612,60125347,60127281,60178793	0.575499
spleen_female_adult_53_years	chrX	53546437	53546445	53546444	-	RAMPAGE_only	4	4	8	0.475192	2.521641	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.750000
spleen_female_adult_53_years	chr9	7103839	7103865	7103839	+	High_confidence	6	7	13	0.772187	3.180833	chr9	7103879	7104109	LINE|L2|L2b	+	chr9	7104267	7170212	KDM4C|ENST00000490806.5	+	7104267,7128065,7165237,7169797	7104354,7128236,7165357,7170212	0.923077
spleen_female_adult_53_years	chr20	3795750	3795789	3795788	+	High_confidence	40	40	216	12.830191	6.137950	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.981481
spleen_female_adult_53_years	chr17	51435459	51435460	51435459	+	High_confidence	6	6	9	0.534591	2.725481	chr17	51434884	51435552	LTR|ERV1|LTR8	+	chr17	51435426	51443802	LINC02073|ENST00000592081.1	+	51435426,51440232,51443733	51435696,51440428,51443802	0.555556
spleen_female_adult_53_years	chr11	86938472	86938490	86938474	-	RAMPAGE_only	6	8	13	0.772187	3.251629	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86892213	86922104	AP001528.2|ENST00000528660.1	-	86892213,86896412,86921235	86892372,86896540,86922104	0.769231
spleen_female_adult_53_years	chr1	36476233	36476240	36476239	-	High_confidence	7	7	15	0.890985	3.039149	chr1	36476212	36476442	SINE|MIR|MIR	+	chr1	36466043	36476327	CSF3R|ENST00000480825.6	-	36466043,36467557,36467821,36469651,36471432,36472237,36472516,36473718,36475376	36467311,36467651,36469257,36469840,36472139,36472391,36473622,36473887,36476327	0.933333
spleen_female_adult_53_years	chr3	188397633	188397662	188397633	+	RAMPAGE_only	2	3	10	0.593990	3.169925	chr3	188397610	188397913	SINE|Alu|AluSz	-	chr3	188239863	188406291	LPP|ENST00000457242.1	+	188239863,188406111	188240162,188406291	0.600000
spleen_female_adult_53_years	chr4	4269605	4269614	4269609	-	High_confidence	114	132	371	22.037041	4.252015	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4269596	STRG.30709.2	-	4267700,4268529,4269428	4268023,4268615,4269596	0.967655
spleen_female_adult_53_years	chr11	65639851	65639872	65639861	+	High_confidence	21	23	58	3.445144	5.327724	chr11	65639882	65640011	SINE|MIR|MIRc	+	chr11	65639865	65650880	SIPA1|ENST00000527525.5	+	65639865,65640830,65642249,65642462,65644954,65645853,65646220,65646455,65646969,65647383,65649261,65649560,65649756,65649949,65650137,65650400,65650568	65640021,65641600,65642377,65642639,65645129,65645957,65646378,65646663,65647065,65647658,65649480,65649672,65649865,65650051,65650192,65650479,65650880	0.844828
spleen_female_adult_53_years	chrX	53211519	53211564	53211519	-	High_confidence	2	2	9	0.534591	2.750000	chrX	53211312	53211478	SINE|MIR|MIRb	-	chrX	53198489	53211658	KDM5C|ENST00000497100.5	-	53198489,53198976,53201549,53201853,53210413,53210675,53211496	53198888,53199158,53201744,53201973,53210576,53210857,53211658	0.888889
spleen_female_adult_53_years	chr21	33447116	33447117	33447116	-	RAMPAGE_only	7	7	11	0.653389	2.663533	chr21	33446861	33447175	SINE|Alu|AluSq2	+	chr21	33432484	33448964	TMEM50B|ENST00000484377.5	-	33432484,33436882,33439213,33448781	33432802,33436992,33439297,33448964	0.818182
spleen_female_adult_53_years	chr11	27495853	27495856	27495855	-	RAMPAGE_only	4	7	10	0.593990	2.503258	chr11	27495831	27496012	SINE|Alu|FRAM	+	chr11	27494897	27506769	LIN7C|ENST00000524596.1	-	27494897,27499358,27501801,27506715	27498804,27499568,27501920,27506769	0.800000
spleen_female_adult_53_years	chr14	101819735	101819782	101819779	+	RAMPAGE_only	11	11	63	3.742139	4.387269	chr14	101819651	101819923	SINE|Alu|AluJb	-	chr14	101761861	101821098	PPP2R5C|ENST00000556068.5	+	101761861,101762904,101786017,101818026	101761920,101762970,101786183,101821098	0.793651
spleen_female_adult_53_years	chr15	32586907	32586959	32586958	+	RAMPAGE_only	8	8	43	2.554158	4.497982	chr15	32586884	32587188	SINE|Alu|AluSx1	-	chr15	32536713	32597640	STRG.97697.1	+	32536713,32575570,32575916,32579707,32595267,32596277,32596518,32597450	32537006,32575668,32576000,32587425,32595387,32596337,32596599,32597640	0.813953
spleen_female_adult_53_years	chr14	102008078	102008079	102008078	+	High_confidence	8	8	8	0.475192	2.500000	chr14	102007751	102008142	LTR|ERVL-MaLR|MLT1B	-	chr14	102008226	102037417	DYNC1H1|ENST00000643508.1	+	102008226,102009842,102010275,102010739,102011874,102012313,102015104,102015855,102016348,102016765,102017087,102017382,102018450,102019892,102022750,102026573,102027173,102027382,102027618,102027936,102029538,102029818,102030161,102032271,102033064,102033268,102033975,102034324,102036488	102008337,102010086,102010459,102010952,102012113,102012470,102015332,102016086,102016489,102016999,102017294,102017504,102018616,102020056,102022880,102026707,102027288,102027544,102027833,102028141,102029712,102029938,102030282,102032467,102033182,102033484,102034188,102034452,102037417	1.000000
spleen_female_adult_53_years	chr1	100268226	100268281	100268280	+	RAMPAGE_only	4	4	21	1.247380	3.003702	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266288	100292769	STRG.5261.3	+	100266288,100266523,100268136,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100292769	0.952381
spleen_female_adult_53_years	chr10	96669602	96669628	96669627	-	High_confidence	5	5	10	0.593990	3.321928	chr10	96669508	96669789	SINE|Alu|AluJo	+	chr10	96594494	96669611	PIK3AP1|ENST00000371110.6	-	96594494,96602279,96603978,96609711,96616638,96620351,96623471,96626707,96628397,96645472,96648658,96651247,96651508,96652697,96656797,96669530	96595634,96602398,96604049,96609867,96616711,96620557,96623537,96626905,96628493,96645662,96648855,96651380,96651651,96652842,96656934,96669611	0.600000
spleen_female_adult_53_years	chr12	66193966	66193967	66193966	+	RAMPAGE_only	61	61	67	3.979735	3.987988	chr12	66193918	66194204	SINE|Alu|AluJb	-	chr12	66189256	66254622	STRG.86384.4	+	66189256,66203710,66209455,66210146,66211445,66217170,66226722,66228251,66244947,66245097,66247694	66198136,66203893,66209520,66210201,66211597,66217235,66226837,66244684,66245010,66245262,66254622	0.985075
spleen_female_adult_53_years	chr12	108635848	108635849	108635848	+	High_confidence	678	681	695	41.282328	7.147272	chr12	108635755	108635962	SINE|MIR|MIRb	-	chr12	108635848	108642689	STRG.88406.2	+	108635848,108640873	108636455,108642689	0.666187
spleen_female_adult_53_years	chr2	111480260	111480263	111480260	-	RAMPAGE_only	19	22	29	1.722572	3.967720	chr2	111480041	111480456	LTR|ERVL-MaLR|MLT1C	-	chr2	111473217	111481392	STRG.16679.1	-	111473217	111481392	0.758621
spleen_female_adult_53_years	chr8	143281653	143281687	143281686	-	High_confidence	16	18	50	2.969952	4.598563	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143281069	143281665	MINCR|ENST00000524335.1	-	143281069,143281481	143281384,143281665	0.500000
spleen_female_adult_53_years	chr9	41276300	41276301	41276300	+	High_confidence	6	7	9	0.534591	2.500000	chr9	41275928	41278963	LINE|L1|L1PBa	-	chr9	41276279	41282846	AL845472.1|ENST00000619442.1	+	41276279,41279441,41280258	41276436,41279819,41282846	0.888889
spleen_female_adult_53_years	chr22	37755657	37755658	37755657	+	High_confidence	5	5	8	0.475192	3.000000	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37754881	37784047	STRG.120817.3	+	37754881,37755100,37755549,37757612,37759153,37765669,37768073,37769027,37769261,37771649,37772600,37773782,37783940	37754984,37755190,37755659,37758138,37759264,37765817,37768176,37769187,37769375,37771736,37772764,37779568,37784047	0.750000
spleen_female_adult_53_years	chr9	123179083	123179131	123179130	-	RAMPAGE_only	3	3	15	0.890985	3.521641	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.933333
spleen_female_adult_53_years	chr1	19344373	19344429	19344373	-	RAMPAGE_only	11	11	39	2.316562	4.374895	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.897436
spleen_female_adult_53_years	chr2	224973963	224973987	224973986	+	High_confidence	9	9	19	1.128582	3.947703	chr2	224973948	224974218	LINE|L2|L2c	+	chr2	224974207	224974752	STRG.21175.1	+	224974207	224974752	0.526316
spleen_female_adult_53_years	chr12	10312946	10312952	10312946	+	RAMPAGE_only	4	4	10	0.593990	2.721928	chr12	10312707	10313015	SINE|Alu|AluYm1	+	chr12	10308049	10314818	KLRD1|ENST00000539374.1	+	10308049,10309387,10309625,10311463,10313409,10314672	10308084,10309480,10309688,10311619,10313513,10314818	0.900000
spleen_female_adult_53_years	chr2	164761350	164761404	164761355	-	High_confidence	35	36	272	16.156537	6.863243	chr2	164761126	164761399	SINE|Alu|AluSp	+	chr2	164729929	164761395	STRG.18389.14	-	164729929,164743686,164761282	164730115,164743875,164761395	0.551471
spleen_female_adult_53_years	chr16	65053813	65053854	65053820	-	RAMPAGE_only	11	11	33	1.960168	4.369707	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.727273
spleen_female_adult_53_years	chr6	128241286	128241324	128241323	-	High_confidence	23	26	123	7.306081	4.785373	chr6	128241276	128241454	DNA|hAT-Charlie|MER5A	+	chr6	127968782	128241299	STRG.50390.3	-	127968782,127973021,127973663,127976656,127976922,127981115,127982830,127983241,127985720,127990768,127991293,127992672,127995461,127996900,127998719,128005083,128009129,128064757,128067518,128078812,128082436,128083714,128089689,128184431,128218921,128240034,128241222	127970280,127973157,127973827,127976782,127977054,127981289,127982980,127983377,127985875,127990885,127991391,127992709,127995538,127996988,127998904,128005244,128009268,128064794,128067792,128078918,128082638,128083824,128089992,128184725,128219096,128240150,128241299	0.934959
spleen_female_adult_53_years	chr11	70397734	70397735	70397734	+	High_confidence	4	4	6	0.356394	2.584963	chr11	70397653	70398136	LINE|L2|L2c	+	chr11	70398403	70436584	CTTN|ENST00000346329.7	+	70398403,70405264,70407297,70407517,70409830,70414541,70415662,70417012,70419745,70420399,70422939,70425331,70429050,70431190,70433100,70433646,70435025	70398614,70405361,70407384,70407591,70409960,70414652,70415717,70417123,70419856,70420510,70422995,70425401,70429199,70431280,70433278,70433718,70436584	0.500000
spleen_female_adult_53_years	chr1	6820193	6820198	6820197	+	RAMPAGE_only	6	7	13	0.772187	3.084963	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6853047	6888193	CAMTA1|ENST00000470648.5	+	6853047,6871756,6887653	6853189,6871840,6888193	0.538462
spleen_female_adult_53_years	chr11	73272149	73272150	73272149	+	High_confidence	9	9	14	0.831586	3.378783	chr11	73272030	73272210	SINE|MIR|MIRb	-	chr11	73272141	73298625	P2RY6|NM_001277204.1	+	73272141,73295729,73296484	73272466,73295815,73298625	0.928571
spleen_female_adult_53_years	chr2	233357066	233357098	233357066	+	RAMPAGE_only	21	22	93	5.524110	5.595776	chr2	233356905	233357200	LTR|ERVL|LTR33A_	-	chr2	233354895	233435894	STRG.21477.5	+	233354895,233388256,233390402,233434379,233434768,233435817	233357327,233388367,233390483,233434484,233434901,233435894	0.892473
spleen_female_adult_53_years	chrX	71198169	71198196	71198195	-	High_confidence	30	30	77	4.573726	5.390140	chrX	71198068	71198187	SINE|MIR|MIR3	-	chrX	71183558	71198175	AL590764.1|ENST00000450860.1	-	71183558,71197908	71184017,71198175	0.597403
spleen_female_adult_53_years	chr14	32075876	32075880	32075879	+	High_confidence	7	7	15	0.890985	2.638460	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076113	32090780	ARHGAP5|ENST00000555814.1	+	32076113,32076457,32090501	32076217,32076657,32090780	0.800000
spleen_female_adult_53_years	chr15	92939462	92939477	92939462	+	High_confidence	5	5	10	0.593990	2.921928	chr15	92939359	92939489	DNA|hAT-Charlie|MER5A	+	chr15	92939653	92949228	CHD2|ENST00000637613.1	+	92939653,92941821,92942842,92944414,92945820,92946037,92946247,92948951	92939718,92941955,92943068,92944515,92945865,92946082,92946340,92949228	0.900000
spleen_female_adult_53_years	chr11	121448859	121448879	121448866	+	RAMPAGE_only	8	8	22	1.306779	3.880180	chr11	121448674	121449006	LINE|L2|L2b	-	chr11	121452202	121633762	SORL1|NM_003105.5	+	121452202,121470006,121478117,121488031,121490042,121496868,121513002,121514151,121520656,121522585,121522915,121532463,121543547,121545242,121549959,121550584,121553936,121555186,121557313,121558590,121559518,121566939,121570156,121574240,121577280,121583457,121586221,121588019,121589258,121590039,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121452616,121470123,121478243,121488193,121490110,121497049,121513104,121514321,121520849,121522703,121522989,121532552,121543726,121545429,121550088,121550670,121554109,121555318,121557405,121558837,121559657,121567113,121570270,121574363,121577400,121583583,121586329,121588151,121589390,121590174,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121633762	0.727273
spleen_female_adult_53_years	chr17	59619894	59619929	59619894	+	High_confidence	878	998	3412	202.669499	5.426745	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.976260
spleen_female_adult_53_years	chrX	5726193	5726194	5726193	-	High_confidence	16	16	23	1.366178	3.936260	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.695652
spleen_female_adult_53_years	chr19	54890003	54890004	54890003	+	RAMPAGE_only	4	6	7	0.415793	2.521641	chr19	54889964	54890253	SINE|Alu|AluSx	-	chr19	54874279	54890472	FCAR|ENST00000355524.7	+	54874279,54875329,54885234,54888006,54889648	54874323,54875365,54885525,54888294,54890472	0.857143
spleen_female_adult_53_years	chr2	89245030	89245064	89245040	-	RAMPAGE_only	10	10	25	1.484976	4.023465	chr2	89245031	89245086	SINE|tRNA-RTE|MamSINE1	+	chr2	88857160	89320146	STRG.16021.2	-	88857160,88861524,89319616,89320044	88857683,88861556,89319920,89320146	0.720000
spleen_female_adult_53_years	chr14	23699461	23699471	23699470	+	High_confidence	100	108	173	10.276033	6.385714	chr14	23699385	23700234	LTR|ERV1|LTR1D1	-	chr14	23699460	23705186	STRG.92839.1	+	23699460,23701550,23703659	23699531,23701929,23705186	0.936416
spleen_female_adult_53_years	chr12	58781711	58781730	58781718	-	High_confidence	8	8	16	0.950385	3.773557	chr12	58781360	58781953	LTR|ERVL|MER70B	-	chr12	58781175	58781769	STRG.85994.1	-	58781175	58781769	0.687500
spleen_female_adult_53_years	chr3	143011942	143011943	143011942	+	High_confidence	6	6	9	0.534591	2.750000	chr3	143011380	143012140	DNA|hAT-Charlie|Charlie1a	+	chr3	143011938	143016860	U2SURP|ENST00000485374.5	+	143011938,143012221,143014310,143016256,143016841	143012023,143012373,143014409,143016371,143016860	0.888889
spleen_female_adult_53_years	chr12	126772232	126772259	126772237	-	High_confidence	22	22	86	5.108317	5.359829	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126730700	126772262	LINC00944|NR_033878.1	-	126730700,126732342,126746260,126747930,126772078	126730803,126732407,126746332,126748127,126772262	0.604651
spleen_female_adult_53_years	chr1	202551736	202551798	202551797	+	RAMPAGE_only	37	41	204	12.117403	6.463727	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.534314
spleen_female_adult_53_years	chr7	150567272	150567288	150567287	+	High_confidence	6	6	11	0.653389	3.095795	chr7	150567129	150567290	DNA|hAT-Charlie|MER3	-	chr7	150567276	150573955	GIMAP4|ENST00000255945.3	+	150567276,150569887,150572128	150567437,150569959,150573955	0.909091
spleen_female_adult_53_years	chr10	7186614	7186630	7186629	-	RAMPAGE_only	7	12	22	1.306779	4.201841	chr10	7186480	7186609	SINE|Alu|AluJo	-	chr10	7157218	7178793	STRG.71390.3	-	7157218,7170927,7171894	7163910,7171056,7178793	0.954545
spleen_female_adult_53_years	chr2	138503252	138503260	138503259	-	RAMPAGE_only	5	6	11	0.653389	2.921928	chr2	138503173	138503429	SINE|MIR|MIR	+	chr2	138499862	138501651	STRG.17664.1	-	138499862,138501318	138500880,138501651	0.727273
spleen_female_adult_53_years	chr13	110179281	110179309	110179297	-	RAMPAGE_only	5	5	23	1.366178	3.880180	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110149064	110212436	STRG.92451.2	-	110149064,110149899,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110186480,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416	110149720,110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186408,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212436	0.913043
spleen_female_adult_53_years	chr14	24308739	24308743	24308739	-	RAMPAGE_only	4	4	8	0.475192	3.000000	chr14	24308661	24308745	LTR|ERVL|LTR16E1	+	chr14	24305186	24311370	CIDEB|NM_014430.2	-	24305186,24305946,24306373,24307370,24307817,24308478,24310648	24305765,24306137,24306523,24307515,24307920,24308830,24311370	0.750000
spleen_female_adult_53_years	chr3	197913288	197913313	197913295	-	High_confidence	12	12	43	2.554158	3.925071	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.930233
spleen_female_adult_53_years	chr8	11864387	11864445	11864444	-	RAMPAGE_only	30	30	56	3.326346	5.182006	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.785714
spleen_female_adult_53_years	chr3	152317420	152317445	152317444	+	RAMPAGE_only	2	3	9	0.534591	2.500000	chr3	152317330	152317619	SINE|Alu|AluSz	-	chr3	152300197	152465203	STRG.28771.4	+	152300197,152329742,152414940,152432716,152445281,152447619,152455541,152456266,152459270,152462384	152329647,152338673,152415111,152432920,152445539,152447773,152455577,152456361,152459345,152465203	0.888889
spleen_female_adult_53_years	chr1	198519659	198519680	198519659	-	High_confidence	3	3	7	0.415793	2.521641	chr1	198519227	198519984	LINE|L2|L2	+	chr1	198518756	198519875	STRG.9051.1	-	198518756	198519875	0.714286
spleen_female_adult_53_years	chr8	47601279	47601299	47601279	+	RAMPAGE_only	5	5	24	1.425577	4.418296	chr8	47601256	47601388	SINE|MIR|MIRb	-	chr8	47618674	47713441	STRG.61305.15	+	47618674,47673800,47700402,47701720,47701955,47712661	47633625,47673941,47700490,47701864,47702015,47713441	0.500000
spleen_female_adult_53_years	chr10	124605400	124605401	124605400	+	RAMPAGE_only	7	7	9	0.534591	2.947703	chr10	124605271	124605664	LINE|L2|L2b	-	chr10	124461842	124614141	LHPP|ENST00000368839.1	+	124461842,124484138,124488421,124496960,124498035,124613263	124461987,124484326,124488575,124497024,124498128,124614141	0.666667
spleen_female_adult_53_years	chr22	37232810	37232811	37232810	-	RAMPAGE_only	7	8	10	0.593990	2.947703	chr22	37232591	37232793	LINE|L2|L2c	-	chr22	37225965	37231503	RAC2|ENST00000481215.1	-	37225965,37226670,37231230	37226039,37226803,37231503	0.600000
spleen_female_adult_53_years	chr12	51284935	51284936	51284935	-	RAMPAGE_only	14	14	14	0.831586	3.378783	chr12	51284928	51285013	SINE|MIR|MIR3	-	chr12	51281037	51324115	BIN2|ENST00000604560.5	-	51281037,51284715,51291590,51295795,51297088,51299202,51299606,51302019,51302685,51303086,51324021	51281528,51284780,51292344,51295878,51297164,51299288,51299714,51302115,51302780,51303141,51324115	0.857143
spleen_female_adult_53_years	chr3	168045076	168045104	168045103	-	High_confidence	4	4	10	0.593990	2.921928	chr3	168045102	168045227	SINE|MIR|MIR3	-	chr3	168041117	168044881	GOLIM4|ENST00000479415.1	-	168041117,168043378,168044827	168041474,168043529,168044881	1.000000
spleen_female_adult_53_years	chr21	38224365	38224366	38224365	+	RAMPAGE_only	7	7	7	0.415793	2.521641	chr21	38224042	38224444	LTR|ERV1|LTR76	-	chr21	38229914	38301826	KCNJ15|NM_001276438.1	+	38229914,38296925,38299243	38230023,38297023,38301826	1.000000
spleen_female_adult_53_years	chr2	73640851	73640871	73640870	+	High_confidence	10	10	24	1.425577	4.368523	chr2	73640769	73640932	LTR|ERVL-MaLR|MLT1J2	+	chr2	73640658	73695122	STRG.15201.10	+	73640658,73671029,73672308,73672807,73673812,73674841,73684960,73693803	73641325,73671150,73672495,73673050,73673996,73674905,73685086,73695122	0.875000
spleen_female_adult_53_years	chr11	60182444	60182479	60182444	-	High_confidence	4	4	12	0.712788	3.418296	chr11	60182383	60182456	SINE|MIR|MIRb	-	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.833333
spleen_female_adult_53_years	chr22	31290264	31290273	31290264	-	High_confidence	3	3	9	0.534591	3.000000	chr22	31290108	31290412	SINE|Alu|AluSx	+	chr22	31281678	31290726	PIK3IP1|ENST00000493034.1	-	31281678,31289314,31289498,31289932	31283288,31289393,31289699,31290726	0.888889
spleen_female_adult_53_years	chr11	71480100	71480101	71480100	+	High_confidence	11	11	11	0.653389	2.663533	chr11	71479919	71480150	LINE|L1|L1MB7	-	chr11	71480148	71490876	NADSYN1|ENST00000526039.6	+	71480148,71480754,71481355,71482000,71482848,71484311,71485541,71490844	71480274,71480879,71481404,71482025,71483017,71484447,71485648,71490876	0.727273
spleen_female_adult_53_years	chr10	96737484	96737499	96737498	+	RAMPAGE_only	4	4	8	0.475192	2.750000	chr10	96737353	96737687	LTR|ERVL-MaLR|THE1D	+	chr10	96750265	96750923	RPL13AP5|NR_026712.1	+	96750265	96750923	0.750000
spleen_female_adult_53_years	chr12	110669176	110669204	110669203	-	RAMPAGE_only	6	7	17	1.009784	3.454822	chr12	110669108	110669244	LINE|L2|L2b	+	chr12	110648685	110683267	HVCN1|ENST00000620084.4	-	110648685,110650167,110651216,110655233,110661163,110683224	110649475,110650280,110651448,110655338,110661448,110683267	0.764706
spleen_female_adult_53_years	chr6	2881568	2881569	2881568	-	High_confidence	17	17	23	1.366178	3.663533	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2851159	2881640	STRG.44507.1	-	2851159,2854309,2881499	2853196,2855690,2881640	0.565217
spleen_female_adult_53_years	chr17	77127872	77127873	77127872	+	High_confidence	19	19	25	1.484976	4.136842	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.520000
spleen_female_adult_53_years	chr7	55538647	55538667	55538663	-	High_confidence	11	13	33	1.960168	3.665310	chr7	55538614	55538881	LINE|L1|L1ME4b	+	chr7	55471967	55538660	VOPP1|ENST00000625836.2	-	55471967,55492281,55497612,55521071,55538612	55473045,55492418,55497690,55521130,55538660	0.878788
spleen_female_adult_53_years	chr13	95091926	95091927	95091926	-	RAMPAGE_only	7	7	7	0.415793	2.807355	chr13	95090104	95095286	LINE|L1|L1PB1	+	chr13	95021553	95301319	ABCC4|ENST00000646439.1	-	95021553,95034604,95043681,95044265,95053094,95062703,95071661,95073203,95074213,95075431,95083139,95115921,95161188,95163121,95163609,95166157,95170531,95177706,95177996,95186700,95188452,95194835,95206531,95207799,95209433,95210691,95234609,95246974,95247642,95301240	95021682,95034739,95043787,95044438,95053184,95062859,95071853,95073304,95074324,95075551,95083290,95116001,95161335,95163216,95163647,95166367,95170628,95177793,95178091,95186892,95188542,95194937,95206781,95207925,95209597,95210781,95234834,95247095,95247753,95301319	0.714286
spleen_female_adult_53_years	chr14	77565756	77565757	77565756	-	RAMPAGE_only	11	11	15	0.890985	3.640224	chr14	77565271	77565950	LINE|L1|L1MC4a	+	chr14	77552119	77557321	SPTLC2|ENST00000554365.1	-	77552119,77555299,77557040	77552222,77555519,77557321	0.733333
spleen_female_adult_53_years	chr14	95516120	95516123	95516120	+	High_confidence	19	28	47	2.791755	4.578639	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.893617
spleen_female_adult_53_years	chr1	167438282	167438283	167438282	-	RAMPAGE_only	6	6	8	0.475192	2.521641	chr1	167438225	167438416	DNA|hAT-Tip100|MER115	+	chr1	167431160	167439621	CD247|ENST00000476733.5	-	167431160,167433023,167434019,167435398,167438569,167439343	167431746,167433059,167434076,167435434,167438650,167439621	0.625000
spleen_female_adult_53_years	chr12	7575249	7575284	7575283	-	RAMPAGE_only	28	28	170	10.097836	6.428156	chr12	7575005	7575582	LINE|L1|L1MB8	+	chr12	7470812	7503893	CD163|ENST00000359156.8	-	7470812,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7503644	7471397,7479996,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7503893	0.617647
spleen_female_adult_53_years	chr1	40381294	40381408	40381388	+	RAMPAGE_only	8	18	122	7.246682	5.960879	chr1	40381190	40381531	LINE|L2|L2c	-	chr1	40373696	40415369	STRG.1953.7	+	40373696,40406735,40408652,40409756,40413015,40414158,40415271	40403746,40406869,40408738,40409835,40413102,40414240,40415369	0.983607
spleen_female_adult_53_years	chr22	17105857	17105918	17105917	+	RAMPAGE_only	11	11	46	2.732356	3.973215	chr22	17105952	17106169	SINE|MIR|MIRb	+	chr22	17084958	17115694	IL17RA|ENST00000612619.1	+	17084958,17097061,17097796,17098774,17100354,17101995,17102138,17103493,17104725,17105590,17107726,17108306	17085229,17097086,17097943,17098887,17100481,17102043,17102302,17103577,17104810,17105602,17107768,17115694	0.934783
spleen_female_adult_53_years	chr21	29077437	29077507	29077486	+	High_confidence	15	15	65	3.860937	5.014923	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.753846
spleen_female_adult_53_years	chr1	198694020	198694027	198694026	+	RAMPAGE_only	3	3	7	0.415793	2.584963	chr1	198693910	198694467	LTR|ERVL|MLT2A2	-	chr1	198639096	198695171	PTPRC|ENST00000413409.6	+	198639096,198639225,198692346,198694017	198639137,198639341,198692373,198695171	0.714286
spleen_female_adult_53_years	chr12	119704554	119704565	119704554	-	RAMPAGE_only	3	3	8	0.475192	2.807355	chr12	119704528	119704734	DNA|hAT-Charlie|MER20	-	chr12	119685790	119730722	STRG.88792.1	-	119685790,119690150,119697658,119697975,119700744,119701623,119701849,119704362,119708178,119710250,119710539,119711048,119712590,119713202,119713467,119714196,119718244,119718698,119720477,119721308,119728501,119730494	119688255,119690451,119697838,119698054,119700825,119701752,119701958,119704455,119708318,119710386,119710620,119712347,119712695,119713294,119713648,119714334,119718409,119718816,119720585,119721449,119728606,119730722	0.750000
spleen_female_adult_53_years	chr1	222733132	222733143	222733137	+	RAMPAGE_only	5	5	17	1.009784	3.969816	chr1	222733044	222733380	SINE|Alu|AluSx	-	chr1	222713320	222735196	BROX|NM_001288580.1	+	222713320,222715683,222718924,222719262,222724091,222725449,222727167,222728742,222729619,222730026,222731356,222732627	222713416,222715800,222719031,222719359,222724164,222725555,222727257,222728828,222729701,222730177,222731516,222735196	0.647059
spleen_female_adult_53_years	chr8	57746128	57746129	57746128	+	High_confidence	83	85	88	5.227115	3.486875	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.943182
spleen_female_adult_53_years	chr5	160204808	160204826	160204808	-	RAMPAGE_only	4	4	9	0.534591	2.947703	chr5	160204479	160204790	SINE|Alu|AluSq2	-	chr5	160195743	160199095	AC008609.1|ENST00000524005.1	-	160195743,160198838	160195947,160199095	0.555556
spleen_female_adult_53_years	chr7	85051418	85051419	85051418	-	RAMPAGE_only	37	40	44	2.613557	4.582901	chr7	85051293	85051729	LINE|L2|L2b	+	chr7	84999396	85041939	SEMA3D|ENST00000484038.1	-	84999396,85006801,85012781,85015058,85018251,85020232,85022390,85036888,85040672,85041837	84999865,85006941,85012846,85015216,85018293,85020321,85022613,85037033,85040742,85041939	0.727273
spleen_female_adult_53_years	chr6	77369144	77369167	77369166	-	High_confidence	8	13	39	2.316562	4.875146	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77316646	77369158	STRG.48005.1	-	77316646,77350621,77368885	77316704,77350734,77369158	0.615385
spleen_female_adult_53_years	chr15	42493803	42493848	42493837	-	RAMPAGE_only	4	4	15	0.890985	3.807355	chr15	42493564	42494368	LINE|L2|L2b	+	chr15	42415871	42491141	ZNF106|ENST00000564754.6	-	42415871,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957,42466052,42472235,42490979	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457158,42466114,42472321,42491141	0.866667
spleen_female_adult_53_years	chr8	116652016	116652017	116652016	+	High_confidence	24	25	32	1.900769	4.389365	chr8	116651777	116652029	LINE|L2|L2	-	chr8	116652099	116654625	LOC105375713|NR_136278.1	+	116652099,116654158	116652456,116654625	0.718750
spleen_female_adult_53_years	chr7	102973485	102973503	102973485	+	High_confidence	2	2	9	0.534591	2.503258	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973521	102988856	NFE4|ENST00000420058.1	+	102973521,102978380,102988032,102988374	102973771,102978520,102988232,102988856	1.000000
spleen_female_adult_53_years	chr11	114318596	114318639	114318606	+	RAMPAGE_only	5	7	20	1.187981	3.921928	chr11	114318527	114318663	DNA|hAT-Charlie|Charlie30a	+	chr11	114317043	114319124	STRG.81620.1	+	114317043	114319124	0.800000
spleen_female_adult_53_years	chr7	107580245	107580267	107580264	+	High_confidence	281	282	1228	72.942012	6.356390	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.937296
spleen_female_adult_53_years	chr10	65570509	65570529	65570521	+	High_confidence	12	15	39	2.316562	5.037401	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570528	65616617	STRG.73529.1	+	65570528,65571424,65572934,65585484,65615635	65570759,65571579,65573056,65585802,65616617	0.615385
spleen_female_adult_53_years	chr19	48637367	48637379	48637367	-	High_confidence	16	16	42	2.494759	4.881704	chr19	48637310	48637367	LINE|L1|X9_LINE	+	chr19	48633085	48637363	DBP|ENST00000601104.1	-	48633085,48635579,48636855	48633655,48635990,48637363	0.976190
spleen_female_adult_53_years	chr15	93863033	93863066	93863065	+	High_confidence	104	104	280	16.631729	6.898686	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863044	93883276	STRG.101015.3	+	93863044,93882838	93865648,93883276	0.675000
spleen_female_adult_53_years	chr12	27579351	27579393	27579392	+	RAMPAGE_only	6	6	28	1.663173	4.132944	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.678571
spleen_female_adult_53_years	chr7	87040212	87040219	87040212	-	High_confidence	5	5	19	1.128582	3.426367	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	87038897	87040338	STRG.55631.5	-	87038897	87040338	0.526316
spleen_female_adult_53_years	chr14	34586234	34586285	34586234	-	RAMPAGE_only	2	3	10	0.593990	3.169925	chr14	34585901	34586200	SINE|Alu|AluSg	-	chr14	34561093	34630109	SNX6|ENST00000396526.7	-	34561093,34567685,34567853,34575755,34581560,34586229,34593044,34597549,34603347,34605595,34608029,34609637,34629906	34563175,34567771,34568013,34575842,34581600,34586305,34593150,34597645,34603471,34605717,34608140,34609742,34630109	0.700000
spleen_female_adult_53_years	chr2	28997478	28997507	28997478	+	High_confidence	6	6	20	1.187981	3.932138	chr2	28997313	28997521	LINE|L2|L2b	+	chr2	28997449	29025228	STRG.13017.1	+	28997449,28998142,28999180,29002535,29003491,29011454,29014394,29017153,29017791,29022157,29023085,29024138	28997666,28998253,28999468,29002747,29003682,29011501,29014561,29017304,29017956,29022308,29023191,29025228	0.900000
spleen_female_adult_53_years	chr14	77736978	77736979	77736978	-	High_confidence	12	12	13	0.772187	2.855389	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.846154
spleen_female_adult_53_years	chr2	96342314	96342331	96342321	+	RAMPAGE_only	3	3	10	0.593990	3.169925	chr2	96342343	96342558	SINE|MIR|MIR	+	chr2	96335817	96373815	NCAPH|ENST00000455200.5	+	96335817,96341391,96342049,96342755,96343165,96344104,96351830,96353305,96354182,96359044,96360142,96360587,96364480,96365875,96367256,96368971,96369424,96373291	96335848,96341894,96342140,96342848,96343304,96344229,96352020,96353397,96354388,96359193,96360249,96360710,96364591,96366058,96367373,96369063,96369500,96373815	0.800000
spleen_female_adult_53_years	chr17	59729588	59729629	59729625	+	High_confidence	12	12	48	2.851154	3.854574	chr17	59729497	59729673	LINE|L1|L1MB3	-	chr17	59729714	59737517	VMP1|ENST00000587259.5	+	59729714,59731420,59735337,59737452	59730017,59731522,59735473,59737517	0.979167
spleen_female_adult_53_years	chr14	50159437	50159441	50159440	-	RAMPAGE_only	5	8	13	0.772187	3.251629	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.846154
spleen_female_adult_53_years	chr11	914676	914682	914676	-	High_confidence	5	5	11	0.653389	2.846439	chr11	914587	914736	SINE|Alu|AluJb	+	chr11	904736	914774	CHID1|ENST00000528154.1	-	904736,914303	904859,914774	0.909091
spleen_female_adult_53_years	chr1	36476059	36476110	36476059	-	High_confidence	7	7	32	1.900769	3.852217	chr1	36475856	36476048	DNA|hAT-Blackjack|MER63A	-	chr1	36466043	36476327	CSF3R|ENST00000480825.6	-	36466043,36467557,36467821,36469651,36471432,36472237,36472516,36473718,36475376	36467311,36467651,36469257,36469840,36472139,36472391,36473622,36473887,36476327	1.000000
spleen_female_adult_53_years	chr22	21940680	21940681	21940680	-	High_confidence	26	26	36	2.138365	4.557854	chr22	21940485	21940733	LTR|ERVL-MaLR|MLT1C	+	chr22	21931265	21940657	PPM1F|ENST00000445205.1	-	21931265,21933390,21934023,21939531,21940574	21931291,21933579,21934226,21939680,21940657	0.805556
spleen_female_adult_53_years	chr7	102973265	102973266	102973265	-	High_confidence	22	22	30	1.781971	4.186569	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102883571	102973219	FBXL13|ENST00000477915.5	-	102883571,102884213,102913085,102926273,102963532,102968021,102973149	102883685,102884312,102913215,102926374,102963665,102968117,102973219	0.666667
spleen_female_adult_53_years	chr2	207662375	207662378	207662375	+	High_confidence	192	198	349	20.730262	5.651710	chr2	207662277	207662604	LTR|ERVL-MaLR|MLT1A1	+	chr2	207662374	207667024	LINC01857|ENST00000429730.1	+	207662374,207666680	207662522,207667024	0.905444
spleen_female_adult_53_years	chr10	89889028	89889029	89889028	+	RAMPAGE_only	16	17	24	1.425577	3.464235	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.625000
spleen_female_adult_53_years	chr4	55947926	55947972	55947971	-	RAMPAGE_only	4	4	22	1.306779	3.975418	chr4	55947862	55947994	LTR|ERV1|MER51D	-	chr4	55937813	55941043	STRG.32490.1	-	55937813,55940516	55938955,55941043	0.545455
spleen_female_adult_53_years	chr19	48753676	48753677	48753676	-	High_confidence	26	26	26	1.544375	4.161978	chr19	48753519	48753902	LTR|ERVK|LTR13A	-	chr19	48747375	48753660	STRG.114198.5	-	48747375,48749649,48752489,48753324	48747853,48751283,48753122,48753660	0.923077
spleen_female_adult_53_years	chr16	53445764	53445781	53445780	+	High_confidence	50	51	140	8.315865	4.750218	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.892857
spleen_female_adult_53_years	chr11	118700497	118700498	118700497	+	High_confidence	8	8	8	0.475192	2.750000	chr11	118700359	118700777	LTR|ERVL-MaLR|MLT1H	+	chr11	118700426	118708848	AP002954.1|ENST00000646572.1	+	118700426,118704607,118708381	118700643,118704838,118708848	0.500000
spleen_female_adult_53_years	chr1	97904654	97904676	97904654	-	RAMPAGE_only	73	87	236	14.018172	6.469213	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.584746
spleen_female_adult_53_years	chr8	85378112	85378113	85378112	-	High_confidence	808	834	837	49.716990	4.691741	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.961768
spleen_female_adult_53_years	chr17	81560878	81560901	81560878	-	High_confidence	14	14	35	2.078966	4.264578	chr17	81560717	81560992	LINE|L1|L1M5	-	chr17	81559013	81560889	NPLOC4|ENST00000574964.1	-	81559013,81560720	81559416,81560889	0.742857
spleen_female_adult_53_years	chrX	48683361	48683363	48683362	+	High_confidence	140	285	285	16.928724	5.778318	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.982456
spleen_female_adult_53_years	chr1	155637559	155637604	155637603	-	High_confidence	30	30	101	5.999302	5.266790	chr1	155637451	155637661	LTR|ERV1|LTR12F	-	chr1	155626739	155637623	STRG.7066.1	-	155626739,155637393	155634846,155637623	0.910891
spleen_female_adult_53_years	chr17	6940403	6940410	6940403	-	High_confidence	22	22	35	2.078966	4.370859	chr17	6940273	6940666	LTR|ERV1|MER51A	-	chr17	6938461	6940209	STRG.105177.1	-	6938461	6940209	0.942857
spleen_female_adult_53_years	chr19	45450738	45450745	45450739	-	High_confidence	5	7	14	0.831586	2.950212	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.642857
spleen_female_adult_53_years	chr5	151224458	151224471	151224458	-	High_confidence	4	4	9	0.534591	3.169925	chr5	151224351	151224545	SINE|MIR|MIRb	-	chr5	151181051	151224145	CCDC69|ENST00000355417.6	-	151181051,151184343,151185421,151186022,151187385,151198996,151201581,151205399,151223922	151183614,151184441,151185541,151186124,151187459,151199084,151201688,151205475,151224145	0.555556
spleen_female_adult_53_years	chr2	217842173	217842185	217842173	-	High_confidence	8	8	23	1.366178	4.004886	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.826087
spleen_female_adult_53_years	chr17	44187424	44187425	44187424	+	High_confidence	15	15	15	0.890985	3.506891	chr17	44187463	44187687	SINE|MIR|MIR	+	chr17	44187271	44191711	TMUB2|ENST00000592825.1	+	44187271,44187906,44188934,44190500	44187743,44188009,44189299,44191711	0.666667
spleen_female_adult_53_years	chr19	18848972	18849006	18848972	+	High_confidence	8	8	16	0.950385	3.373557	chr19	18848903	18848975	DNA|TcMar-Tigger|Tigger15a	+	chr19	18849007	18852296	UPF1|ENST00000600868.5	+	18849007,18850074,18850687,18852134	18849076,18850242,18850868,18852296	0.625000
spleen_female_adult_53_years	chr20	48679351	48679411	48679351	-	RAMPAGE_only	2	2	10	0.593990	2.646439	chr20	48679185	48679349	SINE|MIR|MIR	-	chr20	48624251	48827883	PREX1|ENST00000371941.3	-	48624251,48627547,48627860,48629448,48630727,48632276,48632495,48634675,48636462,48637710,48639765,48642167,48642406,48644408,48645850,48649299,48649995,48650893,48651395,48652585,48653360,48655289,48657039,48658135,48659918,48666282,48676192,48679359,48679650,48681234,48688656,48690946,48692671,48700752,48708259,48726289,48734545,48745024,48747808,48827641	48625927,48627615,48627963,48629621,48630794,48632391,48632639,48634775,48636683,48637752,48639894,48642258,48642489,48644497,48646057,48649576,48650206,48651055,48651583,48652706,48653497,48655375,48657188,48658228,48660061,48666355,48676268,48679409,48679754,48681335,48688804,48691096,48692790,48700886,48708421,48726391,48734650,48745147,48747880,48827883	0.700000
spleen_female_adult_53_years	chr9	137738737	137738743	137738737	+	RAMPAGE_only	3	3	9	0.534591	3.000000	chr9	137738221	137739080	LINE|L1|L1MB3	+	chr9	137743173	137776840	EHMT1|ENST00000640639.1	+	137743173,137743391,137743901,137752330,137754170,137757879,137762674,137775108,137776617	137743262,137743528,137744090,137752408,137754291,137758011,137762820,137775252,137776840	0.555556
spleen_female_adult_53_years	chr9	31335108	31335130	31335108	-	High_confidence	4	5	15	0.890985	3.664498	chr9	31334699	31335791	LTR|ERV1|MER52A	-	chr9	31233674	31335121	STRG.66642.1	-	31233674,31234444,31235293,31334656	31233840,31234553,31235419,31335121	0.866667
spleen_female_adult_53_years	chr3	52518331	52518345	52518331	+	High_confidence	3	3	14	0.831586	3.093069	chr3	52518378	52518454	SINE|MIR|MIR3	+	chr3	52518800	52523476	STAB1|ENST00000481626.5	+	52518800,52519263,52519943,52520399,52520641,52521360,52521595,52521843,52522036,52522329,52522554,52522774,52523024,52523221,52523426	52518869,52519564,52520290,52520549,52521005,52521510,52521700,52521951,52522230,52522474,52522688,52522940,52523134,52523341,52523476	0.714286
spleen_female_adult_53_years	chr9	123652014	123652015	123652014	-	RAMPAGE_only	6	6	9	0.534591	2.500000	chr9	123651992	123652144	DNA|hAT-Ac|OldhAT1	-	chr9	123401809	123676791	DENND1A|ENST00000394215.6	-	123401809,123403401,123440359,123450692,123452275,123454738,123457347,123457792,123557569,123583168,123609435,123630375,123652012,123667025,123671290,123676719	123401912,123403490,123440491,123450749,123452347,123454779,123457435,123457897,123557695,123583270,123609481,123630476,123652123,123667079,123671371,123676791	0.777778
spleen_female_adult_53_years	chr3	52482654	52482657	52482654	+	RAMPAGE_only	7	7	13	0.772187	2.931209	chr3	52482568	52482694	DNA|TcMar-Tc2|Kanga1c	+	chr3	52455616	52493071	STRG.24391.2	+	52455616,52457842,52458661,52470858,52471813,52472302,52473733,52476446,52477573,52478096,52478448,52479748,52480183,52480878,52485777,52487195,52489335,52490704,52491351	52455734,52457926,52458844,52470907,52471977,52472398,52473829,52476599,52477642,52478282,52478577,52479862,52480295,52484637,52485827,52488605,52490231,52490833,52493071	1.000000
spleen_female_adult_53_years	chr18	55893231	55893253	55893240	+	High_confidence	5	6	20	1.187981	3.426367	chr18	55887412	55893439	LINE|L1|L1PA3	-	chr18	55893037	56023462	AC009271.1|ENST00000589440.1	+	55893037,56017727,56023401	55893442,56017779,56023462	0.650000
spleen_female_adult_53_years	chr11	58578102	58578133	58578102	-	High_confidence	35	36	146	8.672259	5.891853	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.739726
spleen_female_adult_53_years	chr17	36074607	36074632	36074612	+	High_confidence	12	14	47	2.791755	4.618078	chr17	36074286	36074651	DNA|hAT-Charlie|MER58B	+	chr17	36074500	36077315	STRG.106394.1	+	36074500,36076709	36074848,36077315	0.765957
spleen_female_adult_53_years	chr19	17556487	17556557	17556545	+	High_confidence	31	31	107	6.355696	5.827687	chr19	17556574	17556631	SINE|MIR|MIR	+	chr19	17556560	17568577	COLGALT1|ENST00000600474.1	+	17556560,17559310,17560347,17567405,17568508	17556679,17559421,17560465,17567540,17568577	0.794393
spleen_female_adult_53_years	chr11	64744437	64744471	64744437	-	High_confidence	5	5	11	0.653389	2.732159	chr11	64744414	64744498	SINE|MIR|MIRc	+	chr11	64740867	64744589	RASGRP2|ENST00000394430.5	-	64740867,64741438,64742009,64742793	64741079,64741501,64742112,64744589	0.909091
spleen_female_adult_53_years	chr19	55678426	55678442	55678426	+	RAMPAGE_only	4	4	10	0.593990	2.641604	chr19	55678409	55678486	LINE|L2|L2c	-	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.700000
spleen_female_adult_53_years	chr21	39011218	39011239	39011237	+	High_confidence	4	8	13	0.772187	3.084963	chr21	39011232	39011369	LINE|L2|L2	-	chr21	39011248	39015075	STRG.118818.1	+	39011248,39014621	39011322,39015075	0.615385
spleen_female_adult_53_years	chr2	191682489	191682521	191682489	+	RAMPAGE_only	2	2	7	0.415793	2.521641	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191686157	STRG.19870.8	+	191678989,191681945,191684229,191685598	191679128,191683804,191684296,191686157	1.000000
spleen_female_adult_53_years	chr1	183590910	183590926	183590910	-	High_confidence	16	16	56	3.326346	5.229417	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.839286
spleen_female_adult_53_years	chr1	176162889	176162937	176162936	-	RAMPAGE_only	13	13	20	1.187981	3.746439	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.850000
spleen_female_adult_53_years	chr1	6807002	6807003	6807002	+	RAMPAGE_only	5	5	8	0.475192	2.500000	chr1	6806941	6807209	LINE|L2|L2b	-	chr1	6785551	6887787	CAMTA1|ENST00000461311.1	+	6785551,6820180,6825091,6871756,6887653	6785575,6820250,6825210,6871840,6887787	0.500000
spleen_female_adult_53_years	chr11	65430744	65430845	65430815	+	RAMPAGE_only	93	96	263	15.621946	5.120672	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
spleen_female_adult_53_years	chr19	13149312	13149319	13149318	-	High_confidence	3	4	7	0.415793	2.584963	chr19	13149129	13149441	SINE|Alu|AluSx1	+	chr19	13144270	13149839	STX10|ENST00000593126.5	-	13144270,13144576,13144763,13145287,13149028,13149498,13149727	13144403,13144671,13144870,13145395,13149091,13149593,13149839	0.714286
spleen_female_adult_53_years	chr15	92914950	92914974	92914950	+	High_confidence	27	27	117	6.949687	5.927598	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.871795
spleen_female_adult_53_years	chr16	67183444	67183467	67183444	-	High_confidence	2	2	8	0.475192	2.500000	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67176729	67183941	KIAA0895L|ENST00000563902.1	-	67176729,67178009,67178198,67179429,67179814,67180040,67183261	67176975,67178107,67178504,67179562,67179958,67180666,67183941	0.500000
spleen_female_adult_53_years	chr13	50715096	50715097	50715096	-	High_confidence	9	9	11	0.653389	3.277613	chr13	50714806	50715412	LTR|ERVL-MaLR|MLT1E2	-	chr13	50711007	50715483	DLEU7|ENST00000443723.1	-	50711007,50715425	50713240,50715483	0.636364
spleen_female_adult_53_years	chr20	4800993	4801028	4801027	-	RAMPAGE_only	3	3	7	0.415793	2.521641	chr20	4800953	4801009	DNA|hAT-Ac|OldhAT1	-	chr20	4780022	4795504	RASSF2|ENST00000478553.1	-	4780022,4786230,4787632,4788216,4789595,4790450,4792538,4792993,4795255	4784342,4786328,4787701,4788268,4789697,4790611,4792627,4793054,4795504	0.571429
spleen_female_adult_53_years	chr3	180870516	180870519	180870518	-	High_confidence	15	19	26	1.544375	4.023465	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180742016	180870533	STRG.29520.1	-	180742016,180751347,180781983,180847506,180870046	180748316,180751410,180782124,180847624,180870533	0.884615
spleen_female_adult_53_years	chr9	131121451	131121452	131121451	+	RAMPAGE_only	25	25	35	2.078966	4.764858	chr9	131121449	131121629	SINE|MIR|MIR3	-	chr9	131096550	131123145	AIF1L|ENST00000372300.5	+	131096550,131096801,131111596,131114576,131117755,131120234	131096660,131096863,131111663,131114618,131117847,131123145	0.971429
spleen_female_adult_53_years	chr7	142618826	142618861	142618826	+	High_confidence	5	5	16	0.950385	3.750000	chr7	142618854	142618947	SINE|MIR|MIR3	+	chr7	142618848	142619532	TRBV19|ENST00000390393.3	+	142618848,142619237	142619105,142619532	0.875000
spleen_female_adult_53_years	chr10	124605337	124605371	124605370	+	High_confidence	3	3	7	0.415793	2.807355	chr10	124605271	124605664	LINE|L2|L2b	-	chr10	124605199	124613425	LHPP|ENST00000486535.1	+	124605199,124613263	124605515,124613425	0.571429
spleen_female_adult_53_years	chr6	119491188	119491209	119491208	-	High_confidence	4	5	13	0.772187	3.700440	chr6	119489191	119492975	LINE|L1|L1PB1	+	chr6	119452257	119491304	STRG.49944.2	-	119452257,119456109,119456917	119455193,119456375,119491304	1.000000
spleen_female_adult_53_years	chr21	34512192	34512315	34512209	-	High_confidence	77	79	325	19.304686	6.878825	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.683077
spleen_female_adult_53_years	chr5	88282809	88282810	88282809	+	RAMPAGE_only	5	5	7	0.415793	2.521641	chr5	88282583	88283084	DNA|TcMar-Tigger|Tigger7	-	chr5	88270505	88287657	TMEM161B-AS1|ENST00000507736.1	+	88270505,88282041,88282714,88285740,88287435	88270585,88282106,88282866,88285851,88287657	0.571429
spleen_female_adult_53_years	chr21	29121989	29121993	29121989	+	High_confidence	14	15	24	1.425577	4.142915	chr21	29121887	29122110	DNA|hAT-Charlie|Charlie29a	+	chr21	29122054	29175029	MAP3K7CL|ENST00000460883.5	+	29122054,29149188,29159940,29174711	29122213,29149250,29160056,29175029	0.583333
spleen_female_adult_53_years	chr5	112521517	112521521	112521517	+	High_confidence	13	24	47	2.791755	4.766939	chr5	112518481	112523901	LINE|L1|L1PBa1	-	chr5	112521505	112532630	STRG.41049.1	+	112521505,112529836	112521548,112532630	0.851064
spleen_female_adult_53_years	chr6	30830570	30830639	30830627	-	High_confidence	10	15	93	5.524110	5.874918	chr6	30830591	30830730	LTR|Gypsy|MamGypLTR1b	-	chr6	30812865	30830659	LINC00243|NR_130726.1	-	30812865,30830514	30814772,30830659	0.569892
spleen_female_adult_53_years	chr17	59729704	59729734	59729733	+	High_confidence	50	50	308	18.294902	6.580683	chr17	59729673	59729983	SINE|Alu|AluSq2	-	chr17	59729714	59737517	VMP1|ENST00000587259.5	+	59729714,59731420,59735337,59737452	59730017,59731522,59735473,59737517	0.912338
spleen_female_adult_53_years	chr6	36757385	36757400	36757399	-	High_confidence	58	58	138	8.197067	5.950115	chr6	36757386	36757542	SINE|MIR|MIRc	-	chr6	36740777	36757409	CPNE5|NM_001314019.1	-	36740777,36743688,36744267,36745047,36745387,36746395,36748220,36752579,36753033,36756244,36757284	36742486,36743762,36744325,36745150,36745515,36746577,36748267,36752620,36753095,36756298,36757409	0.826087
spleen_female_adult_53_years	chr11	65382641	65382646	65382645	-	High_confidence	18	19	43	2.554158	4.773270	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65379452	65382645	SLC25A45|ENST00000529962.5	-	65379452,65379866,65380131,65380533,65381874,65382485	65379561,65379938,65380175,65380622,65381969,65382645	0.511628
spleen_female_adult_53_years	chr3	50312875	50312934	50312933	-	High_confidence	74	74	226	13.424181	5.584162	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50302748	50312915	STRG.24445.12	-	50302748,50303787,50309658	50302980,50303953,50312915	0.986726
spleen_female_adult_53_years	chr19	20423697	20423704	20423703	-	RAMPAGE_only	12	15	26	1.544375	3.918296	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.576923
spleen_female_adult_53_years	chr9	134373102	134373106	134373102	+	High_confidence	41	53	88	5.227115	5.484988	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134372437	134442052	STRG.70875.3	+	134372437,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134373180,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134442052	0.818182
spleen_female_adult_53_years	chr10	5768371	5768372	5768371	-	RAMPAGE_only	9	9	13	0.772187	2.777363	chr10	5768371	5769005	LINE|L1|L1MB3	+	chr10	5765228	5769389	GDI2|ENST00000479928.1	-	5765228,5766240,5768212	5766152,5766638,5769389	1.000000
spleen_female_adult_53_years	chr15	88635643	88635661	88635654	+	High_confidence	165	168	519	30.828098	6.854744	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303234.1	+	88635636,88636166,88639342,88652109,88655414	88635700,88636292,88639594,88652310,88656344	0.616570
spleen_female_adult_53_years	chr17	75147988	75148018	75147988	-	RAMPAGE_only	6	6	13	0.772187	3.546594	chr17	75147716	75148024	SINE|Alu|AluSx	+	chr17	75135983	75146780	JPT1|ENST00000481094.1	-	75135983,75146665	75136250,75146780	0.692308
spleen_female_adult_53_years	chr7	150991298	150991300	150991298	+	High_confidence	10	16	16	0.950385	3.202820	chr7	150991259	150991350	LTR|ERVL|ERV3-16A3_LTR	-	chr7	150991103	151014474	NOS3|ENST00000461406.5	+	150991103,150995202,150998356,150998538,150998945,150999189,151000497,151001230,151001543,151001820,151002199,151006426,151006888,151007101,151008929,151009188,151009397,151010114,151010596,151010898,151012350,151013230,151013723,151014007	150991300,150995314,150998448,150998680,150999085,150999364,151000599,151001425,151001617,151001965,151002304,151006494,151007005,151007276,151009062,151009267,151009585,151010287,151010807,151010986,151012472,151013379,151013918,151014474	0.812500
spleen_female_adult_53_years	chr6	113873326	113873347	113873339	-	High_confidence	5	5	13	0.772187	3.084963	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.769231
spleen_female_adult_53_years	chr1	29985729	29985738	29985737	+	High_confidence	4	4	8	0.475192	2.750000	chr1	29985408	29986178	LTR|ERVL|LTR66	+	chr1	29985587	29986150	STRG.1292.1	+	29985587	29986150	0.500000
spleen_female_adult_53_years	chr11	118700419	118700448	118700426	+	High_confidence	10	20	46	2.732356	4.941934	chr11	118700359	118700777	LTR|ERVL-MaLR|MLT1H	+	chr11	118700426	118708848	AP002954.1|ENST00000646572.1	+	118700426,118704607,118708381	118700643,118704838,118708848	0.695652
spleen_female_adult_53_years	chr3	122075165	122075166	122075165	+	RAMPAGE_only	13	14	19	1.128582	3.350209	chr3	122075191	122075670	LINE|CR1|L3	+	chr3	122077848	122121143	CD86|NM_006889.4	+	122077848,122091600,122103511,122106197,122109264,122118047,122119437	122078045,122091650,122103847,122106500,122109408,122118093,122121143	0.631579
spleen_female_adult_53_years	chr5	97073721	97073745	97073723	+	High_confidence	41	91	160	9.503845	5.838936	chr5	97072934	97073730	LTR|ERV1|LTR1F1	+	chr5	97073409	97088049	STRG.40412.1	+	97073409,97082260	97073838,97088049	0.500000
spleen_female_adult_53_years	chr19	54617322	54617323	54617322	+	High_confidence	7	7	7	0.415793	2.807355	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.714286
spleen_female_adult_53_years	chr17	47829857	47829894	47829893	-	High_confidence	6	6	12	0.712788	3.418296	chr17	47829607	47829924	SINE|Alu|AluSz	+	chr17	47823460	47829673	MRPL10|ENST00000290208.11	-	47823460,47826636,47827039,47828500,47829138	47824458,47826781,47827204,47828670,47829673	0.916667
spleen_female_adult_53_years	chr16	726858	726898	726858	-	High_confidence	3	3	14	0.831586	3.238901	chr16	726845	726893	LINE|L2|L2b	-	chr16	725122	726868	CCDC78|ENST00000474647.1	-	725122,725793,725965,726740	725293,725880,726085,726868	0.500000
spleen_female_adult_53_years	chr19	48868595	48868617	48868595	-	High_confidence	136	137	564	33.501054	7.373591	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.994681
spleen_female_adult_53_years	chr17	4736361	4736404	4736361	-	High_confidence	45	55	203	12.058004	4.396047	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.970443
spleen_female_adult_53_years	chr9	122657443	122657452	122657443	-	RAMPAGE_only	7	8	14	0.831586	3.238901	chr9	122657250	122657457	SINE|MIR|MIR	-	chr9	122567116	122583384	OR1L8|ENST00000641027.1	-	122567116,122572779,122576765,122578323,122583320	122568689,122572908,122576901,122578445,122583384	0.785714
spleen_female_adult_53_years	chr19	5680248	5680249	5680248	-	High_confidence	5	5	7	0.415793	2.521641	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
spleen_female_adult_53_years	chr17	30968780	30968802	30968788	+	High_confidence	3	5	12	0.712788	2.688722	chr17	30968749	30968853	LINE|L2|L2	-	chr17	30968784	30970307	RNF135|ENST00000582674.1	+	30968784,30970277	30969335,30970307	0.916667
spleen_female_adult_53_years	chr14	65318782	65318795	65318794	-	High_confidence	6	6	19	1.128582	3.572431	chr14	65318645	65318866	LINE|L2|L2c	-	chr14	65317006	65318797	STRG.94672.2	-	65317006	65318797	0.736842
spleen_female_adult_53_years	chr8	21960290	21960298	21960290	+	RAMPAGE_only	9	12	22	1.306779	3.458525	chr8	21960154	21960311	DNA|hAT-Charlie|MER102c	-	chr8	21966237	22006285	XPO7|ENST00000433566.8	+	21966237,21966856,21969482,21970143,21971875,21974669,21976355,21977769,21980083,21981730,21982639,21984645,21985585,21987140,21987783,21989002,21990343,21990810,21991867,21994362,21995491,21998754,21999090,21999535,22002111,22003218,22003902,22004994	21966313,21967003,21969576,21970310,21971941,21974774,21976521,21977843,21980203,21981877,21982812,21984839,21985691,21987276,21987857,21989083,21990407,21990919,21991974,21994451,21995599,21998837,21999305,21999674,22002272,22003317,22004030,22006285	0.818182
spleen_female_adult_53_years	chr2	191682575	191682594	191682575	+	RAMPAGE_only	11	11	25	1.484976	4.088779	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191686157	STRG.19870.8	+	191678989,191681945,191684229,191685598	191679128,191683804,191684296,191686157	0.920000
spleen_female_adult_53_years	chr6	57961647	57961653	57961649	+	High_confidence	23	35	58	3.445144	4.916742	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961437	57973690	AL445250.1|ENST00000641671.1	+	57961437,57962180,57965516,57971594,57972093	57961742,57962248,57965743,57971656,57973690	0.517241
spleen_female_adult_53_years	chr17	4126914	4126972	4126930	-	High_confidence	13	20	126	7.484278	6.002929	chr17	4126672	4126993	SINE|Alu|AluSz6	+	chr17	4116018	4126957	STRG.105014.12	-	4116018,4123906,4126509	4117166,4124051,4126957	0.880952
spleen_female_adult_53_years	chr1	111128023	111128033	111128023	-	High_confidence	11	11	26	1.544375	4.251629	chr1	111127946	111128007	DNA|hAT-Charlie|Charlie7a	-	chr1	111118123	111128027	DRAM2|ENST00000461449.5	-	111118123,111118804,111119876,111120515,111126226,111127982	111118267,111118897,111119959,111120693,111126294,111128027	0.538462
spleen_female_adult_53_years	chr16	28494126	28494127	28494126	-	High_confidence	5	5	8	0.475192	2.750000	chr16	28493990	28494149	LINE|L2|L2c	-	chr16	28492136	28493986	CLN3|ENST00000566472.1	-	28492136,28493494	28492195,28493986	0.875000
spleen_female_adult_53_years	chr18	46087042	46087066	46087042	-	High_confidence	11	11	19	1.128582	3.683542	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.789474
spleen_female_adult_53_years	chr14	22909531	22909535	22909531	-	RAMPAGE_only	2	2	7	0.415793	2.521641	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22906027	22919110	RBM23|ENST00000554955.5	-	22906027,22908332,22909482,22911327,22918998	22906368,22908380,22909595,22911403,22919110	1.000000
spleen_female_adult_53_years	chr11	117185957	117186013	117186006	+	High_confidence	17	17	65	3.860937	5.352987	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.830769
spleen_female_adult_53_years	chr1	27873246	27873263	27873246	+	High_confidence	2	2	6	0.356394	2.584963	chr1	27873242	27873313	LINE|L2|L2b	+	chr1	27872571	27882604	THEMIS2|ENST00000466068.1	+	27872571,27876587,27879643,27882512	27872640,27876728,27880054,27882604	0.500000
spleen_female_adult_53_years	chr19	17376920	17376921	17376920	-	High_confidence	11	11	17	1.009784	3.625000	chr19	17376820	17376901	SINE|MIR|MIR1_Amn	-	chr19	17351447	17377349	PLVAP|NM_031310.2	-	17351447,17360527,17360771,17365285,17366098,17376919	17352368,17360609,17360832,17365998,17366195,17377349	0.941176
spleen_female_adult_53_years	chr17	16981390	16981394	16981393	-	High_confidence	9	9	17	1.009784	3.410417	chr17	16980989	16981426	LINE|L2|L2a	+	chr17	16975998	16981353	AC104024.1|ENST00000428142.1	-	16975998,16980200,16981300	16977630,16980716,16981353	0.823529
spleen_female_adult_53_years	chr5	14653390	14653391	14653390	-	High_confidence	33	33	33	1.960168	3.836082	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	1.000000
spleen_female_adult_53_years	chr6	3004184	3004200	3004184	+	RAMPAGE_only	2	2	6	0.356394	2.584963	chr6	3003951	3004226	LTR|ERVL-MaLR|MLT1J	-	chr6	3000001	3019755	STRG.44520.2	+	3000001,3002049,3003668,3006467,3010024,3012543,3015529,3016883,3019478	3000085,3002286,3004651,3006559,3010189,3012674,3015643,3016985,3019755	0.666667
spleen_female_adult_53_years	chr1	154322910	154322921	154322920	+	High_confidence	7	7	12	0.712788	3.188722	chr1	154322797	154322954	SINE|MIR|MIRb	+	chr1	154322006	154325324	STRG.6875.1	+	154322006,154322981,154323240,154323588,154324281	154322059,154323119,154323359,154323806,154325324	1.000000
spleen_female_adult_53_years	chr19	51795162	51795172	51795171	+	High_confidence	3	4	9	0.534591	3.000000	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.888889
spleen_female_adult_53_years	chr2	227164620	227164621	227164620	+	High_confidence	23	23	29	1.722572	4.593069	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.655172
spleen_female_adult_53_years	chr7	154928492	154928504	154928503	+	High_confidence	48	50	71	4.217331	5.514718	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.901408
spleen_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	219	222	237	14.077571	4.663559	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.949367
spleen_female_adult_53_years	chr22	19938222	19938232	19938231	-	High_confidence	6	6	12	0.712788	2.913977	chr22	19935775	19938863	LTR|ERVK|HERVK11-int	+	chr22	19875517	19938179	TXNRD2|ENST00000542719.6	-	19875517,19877039,19878089,19878365,19880178,19880621,19883324,19895406,19898038,19899048,19911376,19915213,19915764,19918142,19918859,19919542,19931029,19937982	19875807,19877234,19878187,19878437,19880271,19880717,19883461,19895581,19898130,19899068,19911447,19915276,19915843,19918217,19919004,19919599,19931098,19938179	0.583333
spleen_female_adult_53_years	chr14	91241925	91241963	91241962	+	High_confidence	8	8	14	0.831586	3.546594	chr14	91241759	91242172	LINE|L2|L2a	-	chr14	91242758	91250835	AL135818.1|ENST00000553725.5	+	91242758,91244354,91250764	91243013,91244499,91250835	0.785714
spleen_female_adult_53_years	chr3	152335094	152335095	152335094	+	RAMPAGE_only	9	9	9	0.534591	2.725481	chr3	152335017	152335180	DNA|DNA|UCON8	+	chr3	152300197	152465203	STRG.28771.4	+	152300197,152329742,152414940,152432716,152445281,152447619,152455541,152456266,152459270,152462384	152329647,152338673,152415111,152432920,152445539,152447773,152455577,152456361,152459345,152465203	1.000000
spleen_female_adult_53_years	chr17	68944801	68944838	68944837	+	High_confidence	18	20	57	3.385745	3.726237	chr17	68944814	68945164	LINE|L1|L1MCc	+	chr17	68944739	69018387	STRG.108191.1	+	68944739,69011982,69012251,69018103	68944907,69012103,69012353,69018387	0.859649
spleen_female_adult_53_years	chr3	52615399	52615438	52615423	-	High_confidence	2	2	8	0.475192	2.807355	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.750000
spleen_female_adult_53_years	chr17	74713274	74713284	74713274	-	High_confidence	4	4	9	0.534591	2.503258	chr17	74713024	74713332	SINE|Alu|AluSx4	+	chr17	74694307	74713000	CD300LF|NM_001289086.1	-	74694307,74695724,74698368,74703034,74704477,74705203,74712823	74695251,74695859,74698481,74703143,74704816,74705377,74713000	0.555556
spleen_female_adult_53_years	chr1	35447442	35447446	35447442	-	High_confidence	58	75	128	7.603076	5.508286	chr1	35446426	35447545	LINE|L2|L2b	+	chr1	35442266	35447434	STRG.1642.9	-	35442266,35442905,35444160,35447045	35442336,35443028,35444303,35447434	0.953125
spleen_female_adult_53_years	chr2	37599897	37599904	37599897	+	High_confidence	63	63	155	9.206850	3.831073	chr2	37594197	37600327	LINE|L1|L1PA6	-	chr2	37599911	37600975	STRG.13324.1	+	37599911	37600975	0.954839
spleen_female_adult_53_years	chr5	27472270	27472284	27472283	+	High_confidence	8	10	20	1.187981	3.784184	chr5	27472073	27472487	LTR|ERV1|MER61C	+	chr5	27472291	27486146	PURPL|ENST00000512067.5	+	27472291,27475534,27484925	27472519,27475695,27486146	0.500000
spleen_female_adult_53_years	chr4	54296683	54296727	54296697	+	RAMPAGE_only	8	12	35	2.078966	3.930021	chr4	54296613	54296722	DNA|hAT-Charlie|MER5B	-	chr4	54229096	54298247	PDGFRA|ENST00000257290.9	+	54229096,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54280315,54285370,54285840,54287429,54288798,54289008,54290312,54295124	54229415,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54280482,54285486,54285963,54287541,54288898,54289114,54290554,54298247	1.000000
spleen_female_adult_53_years	chr4	851139	851140	851139	-	High_confidence	10	10	10	0.593990	2.646439	chr4	851102	851393	SINE|Alu|AluJb	-	chr4	849275	851673	GAK|ENST00000502799.1	-	849275,849891	849774,851673	1.000000
spleen_female_adult_53_years	chr19	18938355	18938395	18938394	-	High_confidence	14	14	33	1.960168	4.145864	chr19	18938201	18938361	SINE|MIR|MIR3	-	chr19	18929438	18938982	HOMER3|ENST00000594439.5	-	18929438,18931324,18931508,18931975,18932923,18938352,18938727,18938968	18929634,18931411,18931625,18932132,18933045,18938484,18938884,18938982	0.969697
spleen_female_adult_53_years	chr1	89272596	89272653	89272627	-	High_confidence	6	7	22	1.306779	3.921928	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89262697	89272804	GBP5|ENST00000443807.1	-	89262697,89263735,89264685,89266345,89266956,89267416,89268728,89269365	89262785,89263948,89264966,89266588,89267153,89267526,89268856,89272804	0.909091
spleen_female_adult_53_years	chr5	131316083	131316086	131316083	+	RAMPAGE_only	6	7	13	0.772187	3.084963	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131278760	131393106	STRG.42079.4	+	131278760,131315975,131359208,131385542,131390992,131391828	131287751,131316144,131359547,131385644,131391108,131393106	0.846154
spleen_female_adult_53_years	chr1	22635029	22635050	22635044	+	RAMPAGE_only	6	7	17	1.009784	3.875000	chr1	22634004	22635725	LTR|ERV1|MER52A	-	chr1	22636505	22639608	C1QA|ENST00000374642.7	+	22636505,22637609,22638832	22636702,22637779,22639608	0.823529
spleen_female_adult_53_years	chr1	206053058	206053108	206053058	+	RAMPAGE_only	16	16	34	2.019567	3.351594	chr1	206053000	206053902	LTR|ERV1|Harlequin-int	+	chr1	206037246	206053334	BX571818.1|ENST00000585172.2	+	206037246,206051852,206053020	206037299,206052001,206053334	0.735294
spleen_female_adult_53_years	chr11	93499299	93499304	93499303	-	High_confidence	7	7	17	1.009784	3.101881	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	1.000000
spleen_female_adult_53_years	chr17	56904276	56904333	56904308	-	High_confidence	4	4	15	0.890985	3.378783	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56895769	56904343	TRIM25|ENST00000570473.5	-	56895769,56899114,56901418,56904254	56895952,56899180,56901578,56904343	0.866667
spleen_female_adult_53_years	chr9	129489063	129489126	129489125	+	High_confidence	10	12	48	2.851154	4.871115	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.729167
spleen_female_adult_53_years	chr11	64242546	64242547	64242546	+	High_confidence	8	8	9	0.534591	2.750000	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.888889
spleen_female_adult_53_years	chr11	72135675	72135725	72135708	+	High_confidence	88	103	457	27.145358	6.508906	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	0.912473
spleen_female_adult_53_years	chr2	110780697	110780727	110780697	+	High_confidence	19	23	42	2.494759	4.668170	chr2	110779462	110780748	LINE|L1|L1ME2	+	chr2	110780719	110794137	STRG.16630.1	+	110780719,110784731,110793649,110794075	110781072,110784815,110793736,110794137	0.928571
spleen_female_adult_53_years	chr9	39403406	39403437	39403411	+	High_confidence	15	19	52	3.088750	4.218720	chr9	39403285	39403640	LTR|ERV1|LTR1A2	+	chr9	39403407	39403870	STRG.67115.1	+	39403407	39403870	0.923077
spleen_female_adult_53_years	chr12	8567935	8567938	8567937	-	High_confidence	62	114	133	7.900071	5.532280	chr12	8567561	8568746	LTR|ERV1|MER52C	-	chr12	8534508	8567928	STRG.83457.2	-	8534508,8536089,8537114,8539216,8539854,8567493	8534809,8536205,8537266,8539306,8539947,8567928	0.849624
spleen_female_adult_53_years	chr16	28166792	28166841	28166840	-	RAMPAGE_only	9	10	20	1.187981	3.932138	chr16	28166799	28167174	LINE|L2|L2c	+	chr16	28146171	28169901	STRG.102617.6	-	28146171,28152658,28152929,28155701,28166507,28169749	28146203,28152785,28152964,28156527,28166585,28169901	0.650000
spleen_female_adult_53_years	chr8	118282301	118282310	118282301	+	High_confidence	11	11	20	1.187981	3.826875	chr8	118282102	118282313	SINE|MIR|MIRc	-	chr8	118282260	118288356	AC023590.1|ENST00000449065.5	+	118282260,118284271,118284513,118288238	118282330,118284421,118284586,118288356	0.650000
spleen_female_adult_53_years	chr6	43502209	43502210	43502209	+	High_confidence	12	12	13	0.772187	2.522055	chr6	43502114	43502254	SINE|MIR|MIR3	-	chr6	43501525	43506553	TJAP1|ENST00000454762.1	+	43501525,43502282,43503400,43503622	43501687,43502349,43503508,43506553	0.923077
spleen_female_adult_53_years	chr1	36481486	36481535	36481534	-	RAMPAGE_only	4	4	21	1.247380	3.916127	chr1	36481405	36481665	SINE|MIR|MIR	+	chr1	36466095	36482899	STRG.1717.6	-	36466095,36467229,36467557,36467821,36468074,36469155,36469651,36471432,36472065,36472237,36472516,36473434,36473763,36475376,36481477,36482810	36466827,36467311,36467651,36467962,36468221,36469257,36469840,36471646,36472139,36472391,36472686,36473622,36473887,36479516,36481537,36482899	1.000000
spleen_female_adult_53_years	chr12	7115165	7115173	7115165	+	RAMPAGE_only	6	6	11	0.653389	3.277613	chr12	7114990	7115194	LINE|L2|L2b	+	chr12	7108307	7121851	C1RL-AS1|NR_026947.1	+	7108307,7108672,7110063,7110297,7111024,7112006,7115129,7115385,7118898,7119499,7120505,7121711	7108481,7108947,7110147,7110572,7111606,7112064,7115219,7118677,7119026,7119553,7120625,7121851	0.727273
spleen_female_adult_53_years	chr4	153687951	153687952	153687951	+	RAMPAGE_only	14	14	18	1.069183	3.350209	chr4	153687920	153688176	LTR|ERV1|MER57A-int	+	chr4	153684279	153705378	STRG.36014.8	+	153684279,153702891	153702510,153705378	1.000000
spleen_female_adult_53_years	chr14	81192654	81192712	81192669	-	RAMPAGE_only	10	10	44	2.613557	4.916127	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81180679	81199212	STRG.95807.3	-	81180679,81192518	81185620,81199212	0.840909
spleen_female_adult_53_years	chr12	108537872	108537873	108537872	-	High_confidence	4	4	6	0.356394	2.584963	chr12	108537755	108537902	DNA|hAT-Charlie|MER103C	-	chr12	108531223	108537695	SART3|ENST00000548077.1	-	108531223,108532221,108535358,108536513,108536707,108537487	108531280,108532334,108535468,108536572,108536785,108537695	0.666667
spleen_female_adult_53_years	chr13	24284218	24284220	24284218	+	RAMPAGE_only	6	8	12	0.712788	3.277613	chr13	24284180	24284220	LINE|CR1|L3	+	chr13	24270718	24307069	STRG.89689.4	+	24270718,24284134,24286213,24286764,24288998,24290651,24294738,24297362,24300400,24302597	24278821,24284271,24286393,24286950,24289178,24290884,24294868,24297735,24300475,24307069	0.750000
spleen_female_adult_53_years	chr22	32580127	32580161	32580160	+	High_confidence	28	31	73	4.336129	4.642793	chr22	32580186	32580275	DNA|hAT-Charlie|MER58B	+	chr22	32580168	32584174	STRG.120659.1	+	32580168,32583876	32580350,32584174	0.931507
spleen_female_adult_53_years	chrX	69619208	69619228	69619227	+	High_confidence	7	9	19	1.128582	3.392147	chrX	69619260	69619435	LINE|CR1|CR1_Mam	+	chrX	69619136	69620852	STRG.124470.1	+	69619136	69620852	0.736842
spleen_female_adult_53_years	chr6	165605412	165605423	165605412	-	High_confidence	43	44	158	9.385047	5.585638	chr6	165605372	165605626	LINE|L2|L2b	+	chr6	165605109	165605477	STRG.52000.1	-	165605109	165605477	0.753165
spleen_female_adult_53_years	chr3	135516219	135516237	135516219	-	High_confidence	5	6	17	1.009784	3.625000	chr3	135516138	135516365	LINE|CR1|X7C_LINE	+	chr3	135456293	135516391	STRG.27826.1	-	135456293,135491239,135491562,135493257,135496268,135516149	135458718,135491332,135491803,135493295,135496495,135516391	0.529412
spleen_female_adult_53_years	chr14	85934665	85934710	85934677	+	High_confidence	25	35	116	6.890288	5.819158	chr14	85934517	85934812	LTR|ERV1|LTR12F	+	chr14	85934678	85936083	STRG.95844.1	+	85934678	85936083	0.594828
spleen_female_adult_53_years	chr2	143247289	143247353	143247289	+	RAMPAGE_only	27	27	55	3.266947	5.056372	chr2	143246994	143247508	LTR|ERVL|LTR32	+	chr2	143129329	143768352	ARHGAP15|NM_018460.3	+	143129329,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.709091
spleen_male_adult_37_years	chr20	5010312	5010313	5010312	-	High_confidence	84	84	85	5.935897	5.418812	chr20	5010113	5010529	LTR|ERVL|MLT2B2	-	chr20	4852355	5010293	SLC23A2|ENST00000379333.5	-	4852355,4859288,4861947,4862777,4867769,4869905,4873935,4874575,4883641,4884752,4885820,4899554,4902441,4912879,4932454,4970792,5010181	4857204,4859384,4862085,4862907,4867875,4870053,4874092,4874696,4883823,4884823,4885909,4899712,4902558,4912978,4932716,4970919,5010293	0.941176
spleen_male_adult_37_years	chr11	287408	287468	287467	+	High_confidence	4	4	19	1.326848	3.683542	chr11	287385	287496	LINE|L2|L2a	-	chr11	288037	288987	AC136475.3|ENST00000534742.1	+	288037,288949	288811,288987	0.526316
spleen_male_adult_37_years	chr4	155981047	155981072	155981071	+	High_confidence	8	10	25	1.745852	3.893661	chr4	155980676	155981122	LINE|L1|L1M8	-	chr4	155981059	156010286	STRG.34035.1	+	155981059,156010015	155981225,156010286	0.760000
spleen_male_adult_37_years	chr3	190556207	190556208	190556207	+	RAMPAGE_only	7	7	9	0.628507	2.641604	chr3	190556136	190556235	LINE|L1|L1ME3	-	chr3	190562596	190635461	STRG.28824.11	+	190562596,190604127,190608994,190620274,190623343,190627322	190564353,190604413,190609181,190620440,190623415,190635461	1.000000
spleen_male_adult_37_years	chr19	17336685	17336720	17336685	+	High_confidence	10	10	21	1.466516	3.975418	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.904762
spleen_male_adult_37_years	chr10	95718995	95719037	95719036	+	RAMPAGE_only	3	3	9	0.628507	2.947703	chr10	95718160	95721637	LTR|ERV1|HERV17-int	-	chr10	95711778	95869695	ENTPD1|ENST00000453258.6	+	95711778,95823236,95839690,95842343,95844475,95845356,95847445,95860468,95864723,95866176	95711993,95823364,95839808,95842494,95844635,95845596,95847706,95860582,95864861,95869695	0.888889
spleen_male_adult_37_years	chr7	85051418	85051419	85051418	-	RAMPAGE_only	10	10	11	0.768175	2.921928	chr7	85051293	85051729	LINE|L2|L2b	+	chr7	84999396	85041939	SEMA3D|ENST00000484038.1	-	84999396,85006801,85012781,85015058,85018251,85020232,85022390,85036888,85040672,85041837	84999865,85006941,85012846,85015216,85018293,85020321,85022613,85037033,85040742,85041939	0.727273
spleen_male_adult_37_years	chr7	37690429	37690430	37690429	+	RAMPAGE_only	22	29	29	2.025188	4.282484	chr7	37690241	37690627	LTR|ERVL-MaLR|MSTB	+	chr7	37683796	37692153	STRG.51228.3	+	37683796,37685459	37683903,37692153	0.620690
spleen_male_adult_37_years	chr19	9700673	9700674	9700673	-	High_confidence	38	39	41	2.863197	3.803352	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.878049
spleen_male_adult_37_years	chr11	123060124	123060229	123060168	-	High_confidence	37	38	161	11.243288	5.065561	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.546584
spleen_male_adult_37_years	chr7	140641459	140641460	140641459	-	High_confidence	8	8	8	0.558673	2.750000	chr7	140641382	140641679	LINE|L2|L2b	-	chr7	140601924	140641485	DENND2A|ENST00000491728.5	-	140601924,140605704,140641405	140602542,140605806,140641485	0.750000
spleen_male_adult_37_years	chr4	38750592	38750593	38750592	+	RAMPAGE_only	6	6	6	0.419005	2.584963	chr4	38750527	38751065	LTR|ERVL-MaLR|MLT1G3	-	chr4	38748226	38753775	STRG.30707.2	+	38748226,38750593,38751431	38748790,38750739,38753775	1.000000
spleen_male_adult_37_years	chr11	70397734	70397769	70397768	+	High_confidence	4	6	15	1.047511	3.373557	chr11	70397653	70398136	LINE|L2|L2c	+	chr11	70397733	70419842	STRG.75491.6	+	70397733,70405264,70407297,70407517,70409830,70414541,70415662,70417012,70419745	70398064,70405361,70407384,70407591,70409960,70414652,70415717,70417123,70419842	0.866667
spleen_male_adult_37_years	chr8	144012256	144012278	144012277	+	High_confidence	4	4	10	0.698341	2.503258	chr8	144011998	144012361	LINE|L2|L2b	-	chr8	144012265	144047028	STRG.62311.1	+	144012265,144039908,144040567,144041231,144041983,144046626	144012726,144040463,144041107,144041371,144042095,144047028	0.900000
spleen_male_adult_37_years	chr18	55893202	55893241	55893240	+	High_confidence	8	8	32	2.234691	3.681728	chr18	55887412	55893439	LINE|L1|L1PA3	-	chr18	55893037	56023462	AC009271.1|ENST00000589440.1	+	55893037,56017727,56023401	55893442,56017779,56023462	0.625000
spleen_male_adult_37_years	chr2	159428326	159428357	159428356	-	RAMPAGE_only	7	8	15	1.047511	3.664498	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.600000
spleen_male_adult_37_years	chr2	28997478	28997507	28997478	+	RAMPAGE_only	4	4	18	1.257014	3.852169	chr2	28997313	28997521	LINE|L2|L2b	+	chr2	28981297	29052230	FAM179A|NM_199280.2	+	28981297,28994724,28998142,28999180,29002535,29003491,29011454,29014394,29017153,29017791,29022157,29023085,29024138,29026852,29032933,29033468,29035463,29036540,29045323,29051755	28981538,28994862,28998253,28999468,29002747,29003682,29011501,29014561,29017304,29017956,29022308,29023191,29024374,29027011,29033051,29033563,29035656,29036757,29045410,29052230	0.611111
spleen_male_adult_37_years	chr3	52518330	52518345	52518344	+	High_confidence	6	6	14	0.977677	2.873141	chr3	52518378	52518454	SINE|MIR|MIR3	+	chr3	52518800	52523476	STAB1|ENST00000481626.5	+	52518800,52519263,52519943,52520399,52520641,52521360,52521595,52521843,52522036,52522329,52522554,52522774,52523024,52523221,52523426	52518869,52519564,52520290,52520549,52521005,52521510,52521700,52521951,52522230,52522474,52522688,52522940,52523134,52523341,52523476	0.857143
spleen_male_adult_37_years	chr7	30579249	30579279	30579278	-	RAMPAGE_only	8	8	13	0.907843	2.777363	chr7	30578715	30579253	LTR|ERV1|LOR1-int	-	chr7	30548356	30577779	LOC401320|NR_038889.1	-	30548356,30552099,30561465,30563730,30568832,30576563,30577648	30550781,30552179,30562128,30563998,30568989,30576710,30577779	0.615385
spleen_male_adult_37_years	chr19	16082035	16082046	16082035	+	High_confidence	4	4	8	0.558673	2.500000	chr19	16082077	16082207	SINE|MIR|MIRb	+	chr19	16081722	16093581	TPM4|ENST00000592138.5	+	16081722,16086422,16088026,16089044,16093535	16082046,16086540,16088097,16089120,16093581	0.875000
spleen_male_adult_37_years	chr4	81154221	81154222	81154221	-	High_confidence	5	5	8	0.558673	2.521641	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.875000
spleen_male_adult_37_years	chr3	151539250	151539321	151539281	-	RAMPAGE_only	4	4	22	1.536350	3.916127	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.863636
spleen_male_adult_37_years	chr13	37091101	37091122	37091121	+	High_confidence	365	375	757	52.864402	6.836852	chr13	37090806	37091149	DNA|hAT-Charlie|Charlie17b	+	chr13	37091102	37151974	STRG.86027.1	+	37091102,37104580	37091148,37151974	0.932629
spleen_male_adult_37_years	chr14	75025235	75025248	75025243	-	RAMPAGE_only	9	10	27	1.885520	3.623465	chr14	75025064	75026121	LINE|L2|L2c	+	chr14	75015486	75023018	MLH3|ENST00000554697.5	-	75015486,75017007,75018828,75022813,75022994	75015862,75017201,75018980,75022892,75023018	0.703704
spleen_male_adult_37_years	chr5	56160917	56160930	56160920	-	High_confidence	5	5	27	1.885520	4.088221	chr5	56160851	56161074	SINE|MIR|MIR	+	chr5	56111577	56160929	ANKRD55|ENST00000505970.2	-	56111577,56114202,56116614,56143800,56156945,56159832,56160787	56111782,56114300,56116782,56143929,56156995,56159893,56160929	0.740741
spleen_male_adult_37_years	chr16	27330079	27330102	27330101	+	RAMPAGE_only	5	7	14	0.977677	3.085055	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27340203	27355876	STRG.97963.5	+	27340203,27342120,27344868,27346466,27352539,27355807	27340273,27342259,27345020,27346618,27352696,27355876	0.642857
spleen_male_adult_37_years	chr14	38880954	38881017	38881001	-	High_confidence	12	12	29	2.025188	4.164498	chr14	38880649	38881113	LTR|ERVL-MaLR|MLT1F2	-	chr14	38762580	38880983	STRG.89007.1	-	38762580,38835230,38835541,38880783	38763045,38835398,38839204,38880983	0.965517
spleen_male_adult_37_years	chr16	29745232	29745282	29745246	+	High_confidence	12	12	29	2.025188	3.623024	chr16	29745050	29745346	SINE|Alu|AluJb	+	chr16	29745246	29748299	AC009133.3|ENST00000565600.1	+	29745246,29746782	29745385,29748299	0.827586
spleen_male_adult_37_years	chr9	137738550	137738560	137738559	+	High_confidence	7	7	13	0.907843	3.026987	chr9	137738221	137739080	LINE|L1|L1MB3	+	chr9	137738606	137754221	EHMT1|ENST00000495657.5	+	137738606,137743370,137743901,137752330,137754170	137738779,137743528,137744090,137752408,137754221	0.769231
spleen_male_adult_37_years	chr12	50924078	50924079	50924078	+	High_confidence	13	15	15	1.047511	3.189898	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	1.000000
spleen_male_adult_37_years	chr14	77565756	77565757	77565756	-	RAMPAGE_only	8	8	8	0.558673	2.750000	chr14	77565271	77565950	LINE|L1|L1MC4a	+	chr14	77552119	77557321	SPTLC2|ENST00000554365.1	-	77552119,77555299,77557040	77552222,77555519,77557321	0.625000
spleen_male_adult_37_years	chr1	111473767	111473795	111473767	+	High_confidence	18	18	47	3.282202	4.527681	chr1	111473535	111473833	SINE|Alu|AluYm1	+	chr1	111473791	111478512	C1orf162|ENST00000343534.9	+	111473791,111476017,111476797,111477333,111477650,111477982	111474030,111476065,111476867,111477428,111477775,111478512	0.936170
spleen_male_adult_37_years	chr1	110897839	110897876	110897875	+	RAMPAGE_only	31	31	69	4.818552	4.538021	chr1	110897898	110898002	SINE|MIR|MIR	+	chr1	110894308	110899851	CD53|ENST00000497404.1	+	110894308,110894959,110899123	110894401,110895055,110899851	0.971014
spleen_male_adult_37_years	chr16	27286069	27286081	27286071	+	High_confidence	7	9	16	1.117345	3.250000	chr16	27285896	27286308	LTR|ERVL-MaLR|MLT1G	-	chr16	27286168	27286673	STRG.97956.1	+	27286168	27286673	0.875000
spleen_male_adult_37_years	chr3	189121301	189121340	189121339	+	RAMPAGE_only	5	9	20	1.396682	3.246439	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189127057	189151136	TPRG1|ENST00000488841.6	+	189127057,189132398,189147583,189150655,189150903	189127210,189132697,189147647,189150805,189151136	0.500000
spleen_male_adult_37_years	chr1	22635044	22635057	22635056	+	RAMPAGE_only	11	11	28	1.955354	4.208410	chr1	22634004	22635725	LTR|ERV1|MER52A	-	chr1	22636442	22647887	STRG.1029.2	+	22636442,22637609,22638832,22643634,22644010,22647226	22636702,22637779,22639161,22643714,22644204,22647887	0.928571
spleen_male_adult_37_years	chr14	101823631	101823653	101823652	+	High_confidence	10	10	27	1.885520	4.208410	chr14	101823598	101823757	SINE|MIR|MIRc	-	chr14	101823652	101856757	PPP2R5C|ENST00000556493.1	+	101823652,101824013,101856685	101823881,101824169,101856757	0.518519
spleen_male_adult_37_years	chr11	60182527	60182593	60182553	-	High_confidence	18	18	92	6.424736	5.351927	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.684783
spleen_male_adult_37_years	chr12	91179481	91179524	91179481	-	High_confidence	2	2	11	0.768175	2.921928	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91172527	91179495	DCN|ENST00000550099.5	-	91172527,91178341,91179361	91172868,91178585,91179495	0.818182
spleen_male_adult_37_years	chr13	102846622	102846652	102846651	+	High_confidence	3	3	10	0.698341	2.521928	chr13	102846508	102846823	DNA|TcMar-Tigger|MER2	-	chr13	102845840	102858937	ERCC5|ENST00000535557.5	+	102845840,102852117,102853756,102854287,102856051,102858274,102858910	102846354,102852293,102853872,102854374,102856112,102858418,102858937	0.900000
spleen_male_adult_37_years	chr9	128684466	128684485	128684484	-	High_confidence	16	18	77	5.377225	5.298493	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683092	128684484	STRG.67614.7	-	128683092	128684484	0.636364
spleen_male_adult_37_years	chr8	143039235	143039277	143039276	+	High_confidence	4	4	24	1.676018	3.321324	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.916667
spleen_male_adult_37_years	chr11	58578102	58578133	58578102	-	High_confidence	28	31	146	10.195776	5.511258	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.842466
spleen_male_adult_37_years	chr9	124804320	124804339	124804335	+	RAMPAGE_only	4	4	10	0.698341	2.846439	chr9	124804356	124804442	DNA|hAT-Charlie|MER58B	+	chr9	124800873	124814891	OLFML2A|NM_001282715.1	+	124800873,124801413,124804093,124807780,124809807	124801074,124801663,124804342,124807966,124814891	0.900000
spleen_male_adult_37_years	chr5	151669678	151669697	151669678	-	RAMPAGE_only	3	3	7	0.488839	2.584963	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.857143
spleen_male_adult_37_years	chr7	134432378	134432453	134432378	-	High_confidence	3	3	19	1.326848	3.826875	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.947368
spleen_male_adult_37_years	chr3	46463626	46463654	46463653	-	High_confidence	43	54	185	12.919306	5.701041	chr3	46463529	46463617	LTR|Gypsy|MamGypsy2-LTR	-	chr3	46436004	46463671	LTF|NM_001199149.1	-	46436004,46437939,46439295,46441415,46443440,46445280,46446439,46447307,46448862,46449853,46450494,46454304,46455294,46455795,46456289,46459655,46463443	46436229,46438129,46439480,46441483,46443582,46445436,46446493,46447398,46449017,46450028,46450673,46454360,46455442,46455978,46456398,46459819,46463671	0.940541
spleen_male_adult_37_years	chr8	11493990	11494028	11494027	+	High_confidence	20	21	86	6.005731	5.462383	chr8	11493862	11494036	SINE|MIR|MIRb	-	chr8	11494011	11564599	BLK|NM_001715.2	+	11494011,11543223,11546051,11548031,11549023,11550158,11554742,11555331,11556657,11557961,11561301,11562978,11563902	11494591,11543347,11546103,11548125,11549122,11550262,11554889,11555484,11556837,11558038,11561452,11563110,11564599	0.941860
spleen_male_adult_37_years	chr12	122721155	122721168	122721158	+	RAMPAGE_only	15	15	32	2.234691	4.179229	chr12	122721123	122721174	SINE|MIR|MIR3	+	chr12	122752773	122771064	DENR|ENST00000280557.10	+	122752773,122753692,122762186,122762844,122765303,122767487,122768781,122769033	122752950,122753807,122762206,122762929,122765387,122767604,122768921,122771064	0.562500
spleen_male_adult_37_years	chr1	20685262	20685307	20685269	-	High_confidence	11	11	29	2.025188	4.513153	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.896552
spleen_male_adult_37_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	51	53	102	7.123077	5.222928	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.794118
spleen_male_adult_37_years	chr3	134595263	134595264	134595263	+	RAMPAGE_only	9	11	11	0.768175	2.913977	chr3	134595069	134595442	LTR|ERVL-MaLR|THE1C	+	chr3	134597823	134628104	EPHB1|ENST00000472904.5	+	134597823,134615183,134627939	134597984,134615438,134628104	0.909091
spleen_male_adult_37_years	chr1	84999093	84999105	84999104	+	High_confidence	7	7	12	0.838009	3.084963	chr1	84998858	84999172	DNA|hAT-Charlie|MER1B	-	chr1	84999146	85133138	WDR63|ENST00000370596.5	+	84999146,85071927,85073053,85081233,85082299,85084545,85085830,85093457,85094430,85095930,85097568,85098529,85104523,85108032,85110047,85117728,85121750,85124120,85126510,85128707,85129989,85132854	84999338,85072005,85073092,85081415,85082404,85084695,85086030,85093648,85094555,85096020,85097655,85098658,85104597,85108177,85110135,85117859,85121814,85124251,85126715,85128799,85130112,85133138	0.500000
spleen_male_adult_37_years	chr2	55228156	55228165	55228158	-	RAMPAGE_only	18	24	44	3.072700	4.168887	chr2	55228053	55228212	LINE|L2|L2c	+	chr2	55222271	55224398	CLHC1|ENST00000403506.1	-	55222271,55224190	55222493,55224398	0.568182
spleen_male_adult_37_years	chr5	141968565	141968572	141968571	+	High_confidence	4	4	10	0.698341	2.725481	chr5	141968522	141968686	SINE|MIR|MIR	+	chr5	141968885	141990291	RNF14|NM_004290.4	+	141968885,141970703,141973582,141974803,141978302,141980122,141983379,141984802,141987732	141969167,141970877,141973742,141974955,141978830,141980351,141983552,141984933,141990291	0.700000
spleen_male_adult_37_years	chr11	93499299	93499320	93499303	-	High_confidence	3	3	8	0.558673	2.521641	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	0.875000
spleen_male_adult_37_years	chr6	26474340	26474346	26474345	+	High_confidence	9	9	29	2.025188	3.879894	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26474352	26476469	STRG.43051.1	+	26474352,26476160	26474396,26476469	0.758621
spleen_male_adult_37_years	chr16	53445773	53445794	53445780	+	High_confidence	23	23	78	5.447059	4.765438	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.858974
spleen_male_adult_37_years	chr7	104940943	104940944	104940943	+	High_confidence	536	538	554	38.688083	5.262058	chr7	104939974	104941430	LTR|ERV1|LTR12C	+	chr7	104941062	104962060	AC007384.1|ENST00000415513.1	+	104941062,104961983	104941670,104962060	0.963899
spleen_male_adult_37_years	chr2	112674392	112674418	112674392	+	High_confidence	3	3	10	0.698341	2.646439	chr2	112674308	112674522	LTR|ERVL|LTR50	-	chr2	112674401	112679885	STRG.16002.1	+	112674401,112679721	112674492,112679885	0.600000
spleen_male_adult_37_years	chr1	155637559	155637604	155637603	-	RAMPAGE_only	11	11	32	2.234691	4.453881	chr1	155637451	155637661	LTR|ERV1|LTR12F	-	chr1	155627350	155635222	STRG.6822.1	-	155627350,155634769	155627727,155635222	0.781250
spleen_male_adult_37_years	chr17	4736361	4736404	4736361	-	High_confidence	103	165	422	29.469984	4.363743	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.969194
spleen_male_adult_37_years	chr1	36476432	36476482	36476440	-	High_confidence	4	4	13	0.907843	3.238901	chr1	36476212	36476442	SINE|MIR|MIR	+	chr1	36466043	36476327	CSF3R|ENST00000480825.6	-	36466043,36467557,36467821,36469651,36471432,36472237,36472516,36473718,36475376	36467311,36467651,36469257,36469840,36472139,36472391,36473622,36473887,36476327	1.000000
spleen_male_adult_37_years	chr8	11864410	11864432	11864431	-	RAMPAGE_only	5	5	17	1.187179	3.263933	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.764706
spleen_male_adult_37_years	chr1	175177624	175177625	175177624	-	RAMPAGE_only	10	10	12	0.838009	2.688722	chr1	175177563	175177679	SINE|MIR|MIRc	+	chr1	175156986	175166741	KIAA0040|ENST00000619513.1	-	175156986,175166561	175161146,175166741	0.833333
spleen_male_adult_37_years	chr1	7913221	7913267	7913248	-	RAMPAGE_only	2	2	10	0.698341	2.947703	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7847611	7853491	UTS2|NM_021995.2	-	7847611,7849639,7850811,7852900,7853306	7847882,7849683,7850922,7852923,7853491	0.700000
spleen_male_adult_37_years	chr11	90251203	90251205	90251204	+	High_confidence	11	19	21	1.466516	3.721612	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.523810
spleen_male_adult_37_years	chr9	114394412	114394413	114394412	-	High_confidence	15	15	15	1.047511	2.866248	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	1.000000
spleen_male_adult_37_years	chr1	192986895	192986943	192986920	-	RAMPAGE_only	12	12	65	4.539216	4.295150	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192935795	192957713	AL390957.1|ENST00000647436.1	-	192935795,192957303	192935903,192957713	0.815385
spleen_male_adult_37_years	chr1	110871198	110871212	110871209	+	High_confidence	30	30	123	8.589592	5.336065	chr1	110870731	110871665	LINE|L2|L2b	-	chr1	110871198	110899936	CD53|NM_001040033.1	+	110871198,110873155,110891391,110892344,110894326,110894959,110896652,110897808,110899123	110871259,110873248,110891471,110892533,110894401,110895055,110896733,110897892,110899936	0.723577
spleen_male_adult_37_years	chr1	211366367	211366384	211366383	+	RAMPAGE_only	7	9	17	1.187179	3.327820	chr1	211366365	211366790	LINE|L2|L2c	-	chr1	211326836	211374785	STRG.9242.2	+	211326836,211353238,211354409,211356366,211359911,211360701,211361087,211365375,211371301,211372127	211326889,211353457,211354467,211356468,211360076,211360779,211361162,211369592,211371470,211374785	0.941176
spleen_male_adult_37_years	chr13	100213934	100213957	100213934	+	RAMPAGE_only	4	4	12	0.838009	2.751629	chr13	100212683	100214433	LINE|L1|L1MA3	-	chr13	100102898	100530435	PCCA|ENST00000636366.1	+	100102898,100111840,100111992,100154978,100157286,100209331,100235841,100257594,100262728,100268688,100273195,100425632,100449251,100515426,100527674,100530097	100102960,100111888,100112061,100155092,100157340,100209463,100235878,100257673,100262831,100268783,100273346,100425731,100449305,100515567,100527752,100530435	0.833333
spleen_male_adult_37_years	chr2	86826129	86826142	86826129	-	RAMPAGE_only	16	26	39	2.723529	3.531463	chr2	86826118	86826191	SINE|MIR|MIR1_Amn	+	chr2	86815346	86861915	CD8B|ENST00000393759.6	-	86815346,86822320,86844921,86846683,86852996,86858056,86861822	86815718,86822374,86844958,86846773,86853086,86858416,86861915	0.820513
spleen_male_adult_37_years	chr4	153687951	153687954	153687951	+	RAMPAGE_only	5	5	13	0.907843	3.392747	chr4	153687920	153688176	LTR|ERV1|MER57A-int	+	chr4	153684279	153705259	STRG.34005.6	+	153684279,153687916,153702891	153684360,153702510,153705259	0.923077
spleen_male_adult_37_years	chr6	169654674	169654713	169654704	-	RAMPAGE_only	5	5	18	1.257014	3.381580	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169457211	169649233	WDR27|ENST00000479310.5	-	169457211,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197	169457634,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649233	0.500000
spleen_male_adult_37_years	chr9	41276300	41276301	41276300	+	High_confidence	7	11	11	0.768175	2.913977	chr9	41275928	41278963	LINE|L1|L1PBa	-	chr9	41276279	41282846	AL845472.1|ENST00000619442.1	+	41276279,41279441,41280258	41276436,41279819,41282846	1.000000
spleen_male_adult_37_years	chr16	15798664	15798670	15798664	-	RAMPAGE_only	6	7	14	0.977677	3.238901	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.928571
spleen_male_adult_37_years	chr19	17376920	17376931	17376920	-	High_confidence	4	4	9	0.628507	2.503258	chr19	17376820	17376901	SINE|MIR|MIR1_Amn	-	chr19	17351447	17377349	PLVAP|NM_031310.2	-	17351447,17360527,17360771,17365285,17366098,17376919	17352368,17360609,17360832,17365998,17366195,17377349	1.000000
spleen_male_adult_37_years	chr8	57746128	57746129	57746128	+	High_confidence	11	11	11	0.768175	3.095795	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	1.000000
spleen_male_adult_37_years	chr1	147173186	147173250	147173203	+	High_confidence	3	3	12	0.838009	3.277613	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.916667
spleen_male_adult_37_years	chr6	7154645	7154691	7154678	+	RAMPAGE_only	4	5	18	1.257014	3.263933	chr6	7154535	7154760	SINE|MIR|MIR	-	chr6	7139244	7230433	RREB1|ENST00000483150.1	+	7139244,7140647,7176654,7181123,7181869,7187433,7189158,7210803,7211572,7226466,7228996	7139298,7140808,7176773,7181246,7182082,7187523,7189322,7210948,7211709,7226656,7230433	0.555556
spleen_male_adult_37_years	chr11	119259261	119259277	119259276	+	RAMPAGE_only	5	5	9	0.628507	2.503258	chr11	119258621	119259301	LINE|L1|L1PB3	-	chr11	119270924	119308149	STRG.77825.4	+	119270924,119273867,119275996,119278165,119278509,119284968,119285188,119287851,119296917,119297383,119299494	119271881,119274953,119277844,119278297,119278713,119285100,119285566,119287946,119297034,119298540,119308149	1.000000
spleen_male_adult_37_years	chr9	105500647	105500652	105500651	+	High_confidence	7	8	15	1.047511	2.822580	chr9	105500002	105500744	LINE|L1|L1MCa	-	chr9	105500658	105552433	FSD1L|ENST00000374707.1	+	105500658,105506398,105508616,105512806,105534492,105535066,105539262,105546357	105500763,105506608,105508715,105512936,105534593,105535318,105539351,105552433	1.000000
spleen_male_adult_37_years	chr1	36475968	36475969	36475968	-	High_confidence	18	19	24	1.676018	3.823935	chr1	36475856	36476048	DNA|hAT-Blackjack|MER63A	-	chr1	36466043	36476327	CSF3R|ENST00000480825.6	-	36466043,36467557,36467821,36469651,36471432,36472237,36472516,36473718,36475376	36467311,36467651,36469257,36469840,36472139,36472391,36473622,36473887,36476327	1.000000
spleen_male_adult_37_years	chr19	54572987	54573020	54573001	+	High_confidence	28	28	100	6.983408	5.327414	chr19	54572997	54573273	SINE|Alu|AluJr	-	chr19	54572996	54587560	LILRA2|NM_006866.3	+	54572996,54573697,54574075,54574300,54574730,54575255,54575806,54587200	54573435,54573912,54574111,54574582,54575033,54575552,54576109,54587560	0.960000
spleen_male_adult_37_years	chr1	37893817	37893831	37893830	-	RAMPAGE_only	5	5	9	0.628507	2.750000	chr1	37893462	37893926	LINE|L2|L2c	+	chr1	37885508	37888344	INPP5B|ENST00000467066.1	-	37885508,37886887,37887350,37888242	37885825,37887004,37887465,37888344	0.555556
spleen_male_adult_37_years	chr7	29134245	29134258	29134257	-	RAMPAGE_only	8	8	15	1.047511	3.456565	chr7	29133633	29134827	LINE|L1|HAL1	+	chr7	28995630	29146497	CPVL|ENST00000396276.7	-	28995630,29030576,29064060,29066022,29071772,29072300,29086483,29092622,29095083,29096102,29112703,29120892,29146340	28995882,29030759,29064234,29066121,29071904,29072423,29086550,29092702,29095142,29096217,29112822,29121071,29146497	0.933333
spleen_male_adult_37_years	chr15	89133367	89133402	89133367	+	RAMPAGE_only	2	2	13	0.907843	3.084963	chr15	89133190	89133834	LINE|L1|L1MC5	-	chr15	89116503	89183373	ABHD2|ENST00000562073.1	+	89116503,89151676,89155366,89175811,89183331	89116521,89151852,89155534,89175995,89183373	0.923077
spleen_male_adult_37_years	chrX	48683098	48683138	48683137	+	High_confidence	6	7	20	1.396682	3.221097	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.800000
spleen_male_adult_37_years	chr22	50541383	50541389	50541388	+	RAMPAGE_only	5	6	14	0.977677	3.182006	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	1.000000
spleen_male_adult_37_years	chr6	11728391	11728404	11728403	-	High_confidence	15	15	65	4.539216	4.422164	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.784615
spleen_male_adult_37_years	chr11	75275707	75275737	75275728	-	RAMPAGE_only	3	3	11	0.768175	2.646439	chr11	75275631	75275824	SINE|MIR|MIRb	+	chr11	75266115	75278699	ARRB1|ENST00000532447.5	-	75266115,75268888,75272894,75274073,75276838,75277363,75278608	75266274,75268959,75272978,75274211,75276911,75277448,75278699	0.636364
spleen_male_adult_37_years	chr12	66193966	66193967	66193966	+	RAMPAGE_only	12	12	12	0.838009	2.584963	chr12	66193918	66194204	SINE|Alu|AluJb	-	chr12	66189256	66254622	STRG.82209.2	+	66189256,66203710,66209455,66210146,66211445,66217170,66226722,66228251,66244485,66244947,66245097,66247694	66198136,66203893,66209520,66210201,66211597,66217235,66226837,66228370,66244684,66245010,66245262,66254622	1.000000
spleen_male_adult_37_years	chr9	122406512	122406523	122406512	+	RAMPAGE_only	7	7	16	1.117345	3.240224	chr9	122405232	122406719	LTR|ERV1|LTR12C	-	chr9	122404789	122468643	STRG.67163.1	+	122404789,122415713,122416767,122448929,122468560	122404791,122415782,122416885,122449050,122468643	0.625000
spleen_male_adult_37_years	chr2	24887184	24887185	24887184	-	High_confidence	67	70	89	6.215234	5.427958	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24826046	24887217	STRG.12133.4	-	24826046,24827545,24827901,24830708,24831661,24834484,24834793,24836916,24838444,24839872,24841258,24841555,24842253,24872569,24887092	24826126,24827608,24828161,24830825,24831749,24834646,24834936,24837045,24838622,24840031,24841386,24841667,24842384,24872719,24887217	0.853933
spleen_male_adult_37_years	chr14	85934665	85934710	85934677	+	High_confidence	11	13	48	3.352036	4.655341	chr14	85934517	85934812	LTR|ERV1|LTR12F	+	chr14	85934627	85936194	STRG.91297.1	+	85934627	85936194	0.687500
spleen_male_adult_37_years	chr16	28166792	28166841	28166840	-	RAMPAGE_only	60	64	198	13.827149	5.975176	chr16	28166799	28167174	LINE|L2|L2c	+	chr16	28156132	28165419	XPO6|ENST00000569973.1	-	28156132,28165270	28156527,28165419	0.540404
spleen_male_adult_37_years	chr17	81560878	81560901	81560878	-	High_confidence	7	7	28	1.955354	3.819802	chr17	81560717	81560992	LINE|L1|L1M5	-	chr17	81559013	81560889	NPLOC4|ENST00000574964.1	-	81559013,81560720	81559416,81560889	0.821429
spleen_male_adult_37_years	chr11	14075255	14075273	14075255	+	RAMPAGE_only	2	2	8	0.558673	2.807355	chr11	14075105	14075323	SINE|MIR|MIRb	-	chr11	13962688	14267884	SPON1|ENST00000576479.3	+	13962688,13982846,14041520,14075344,14079898,14135419,14243331,14254527,14255646,14256616,14257715,14259279,14259533,14260587,14262711,14265523	13963142,13982953,14041654,14075418,14080021,14135568,14243396,14254729,14255787,14256692,14257898,14259450,14259701,14260752,14262975,14267884	0.625000
spleen_male_adult_37_years	chr11	64242546	64242547	64242546	+	High_confidence	9	9	14	0.977677	3.039149	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
spleen_male_adult_37_years	chr17	42136462	42136480	42136477	-	High_confidence	5	7	16	1.117345	3.327820	chr17	42136440	42136680	SINE|MIR|MIRb	+	chr17	42128691	42136484	RAB5C|ENST00000550504.5	-	42128691,42130336,42136264	42128800,42130590,42136484	0.750000
spleen_male_adult_37_years	chr3	152243794	152243810	152243809	+	High_confidence	10	15	27	1.885520	3.413661	chr3	152243797	152244104	SINE|Alu|AluSx1	-	chr3	152243827	152300110	MBNL1|ENST00000477171.1	+	152243827,152244320,152299404	152244040,152244440,152300110	0.777778
spleen_male_adult_37_years	chr3	135516221	135516244	135516221	-	High_confidence	3	4	17	1.187179	3.454822	chr3	135516138	135516365	LINE|CR1|X7C_LINE	+	chr3	135454237	135516423	STRG.27031.3	-	135454237,135491562,135493257,135496268,135516149	135458718,135491800,135493295,135496495,135516423	0.588235
spleen_male_adult_37_years	chr16	23869137	23869175	23869174	+	RAMPAGE_only	4	4	9	0.628507	2.503258	chr16	23869145	23869439	LTR|ERVL-MaLR|MLT1I	+	chr16	23865581	23910897	STRG.98140.10	+	23865581,23866978,23899871	23866951,23899565,23910897	0.888889
spleen_male_adult_37_years	chrX	153487611	153487629	153487611	-	RAMPAGE_only	5	5	17	1.187179	3.852169	chrX	153487559	153487609	SINE|MIR|MIR3	-	chrX	153461559	153495516	HAUS7|ENST00000370210.3	-	153461559,153462609,153464987,153469145,153470449,153495373	153462067,153462671,153465055,153469261,153471145,153495516	0.705882
spleen_male_adult_37_years	chr2	232816716	232816732	232816731	+	RAMPAGE_only	8	8	13	0.907843	2.873141	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	1.000000
spleen_male_adult_37_years	chr12	89512643	89512653	89512652	-	RAMPAGE_only	4	4	9	0.628507	3.000000	chr12	89512478	89512739	SINE|Alu|AluJr	+	chr12	89420895	89525563	POC1B|ENST00000549035.1	-	89420895,89425160,89459637,89466769,89467616,89470360,89471613,89472167,89491935,89497170,89525119	89421257,89425379,89459718,89466922,89467685,89470494,89471729,89472275,89492115,89497342,89525563	0.777778
spleen_male_adult_37_years	chr11	65429368	65429389	65429368	+	RAMPAGE_only	18	21	30	2.095023	4.021268	chr11	65428987	65429477	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.966667
spleen_male_adult_37_years	chr3	120719602	120719616	120719615	-	RAMPAGE_only	4	4	8	0.558673	2.521641	chr3	120719120	120721943	LINE|L1|L1PA4	+	chr3	120689546	120742510	RABL3|ENST00000465022.5	-	120689546,120690448,120694152,120705999,120709779,120730695,120742461	120689888,120690487,120694224,120706114,120709909,120730787,120742510	0.500000
spleen_male_adult_37_years	chr18	50843103	50843112	50843111	-	RAMPAGE_only	10	10	25	1.745852	3.638148	chr18	50842925	50843332	LTR|ERVL|MLT2D	-	chr18	50798376	50825402	MRO|ENST00000428869.6	-	50798376,50800035,50801348,50805153,50806703,50809301,50816123,50819580,50825308	50799390,50800143,50801504,50805336,50806850,50809404,50816162,50819702,50825402	0.920000
spleen_male_adult_37_years	chr5	150640300	150640400	150640347	+	High_confidence	89	96	281	19.623378	6.426428	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640313	150656722	STRG.40675.6	+	150640313,150647943,150656403	150640425,150650303,150656722	0.985765
spleen_male_adult_37_years	chr5	177416561	177416583	177416561	-	RAMPAGE_only	7	7	16	1.117345	2.852217	chr5	177416512	177416741	SINE|MIR|MIRb	+	chr5	177402137	177409576	F12|NM_000505.3	-	177402137,177402549,177403253,177403480,177403858,177404195,177404498,177404809,177405053,177405322,177405734,177405961,177409045,177409470	177402459,177402698,177403397,177403617,177404090,177404413,177404664,177404914,177405185,177405433,177405805,177406061,177409103,177409576	0.937500
spleen_male_adult_37_years	chr8	118282301	118282310	118282309	+	High_confidence	12	12	26	1.815686	4.085055	chr8	118282102	118282313	SINE|MIR|MIRc	-	chr8	118282318	118297668	STRG.61185.1	+	118282318,118284271,118288238,118291212,118295674	118282330,118284421,118288316,118291346,118297668	0.730769
spleen_male_adult_37_years	chr1	204870083	204870103	204870094	+	High_confidence	9	9	42	2.933032	4.500981	chr1	204870144	204870213	LINE|CR1|Plat_L3	+	chr1	204870830	205018371	NFASC|ENST00000404076.5	+	204870830,204920631,204944225,204952010,204954187,204954828,204957655,204968248,204968797,204970615,204973275,204974178,204974656,204975270,204976670,204978967,204979361,204980369,204981797,204984026,204985909,204987417,204988632,204991291,205009556,205012796,205016307	204871053,204920740,204944406,204952116,204954384,204954951,204957826,204968360,204968982,204970747,204973419,204974290,204974823,204975418,204976795,204979069,204979559,204980440,204982020,204984142,204986114,204987540,204988806,204991306,205009688,205012866,205018371	0.809524
spleen_male_adult_37_years	chr1	54172719	54172734	54172733	-	RAMPAGE_only	5	5	11	0.768175	2.913977	chr1	54172537	54172738	LINE|L2|L2b	+	chr1	54138994	54153770	CDCP2|ENST00000371330.1	-	54138994,54141097,54144465,54152843	54140106,54141433,54144813,54153770	0.818182
spleen_male_adult_37_years	chr2	233170558	233170597	233170596	+	High_confidence	4	4	17	1.187179	3.327820	chr2	233170621	233170924	SINE|Alu|AluY	+	chr2	233170373	233184483	INPP5D|ENST00000465281.1	+	233170373,233171063,233177264,233182409,233184407	233170604,233171152,233177346,233182499,233184483	0.764706
spleen_male_adult_37_years	chr9	114345863	114345940	114345863	-	High_confidence	17	17	46	3.212368	4.294646	chr9	114345713	114345851	DNA|hAT-Charlie|Charlie17a	-	chr9	114336130	114346774	AKNA|ENST00000492875.1	-	114336130,114341532,114342008,114343707,114346668	114337306,114341725,114342125,114346009,114346774	0.956522
spleen_male_adult_37_years	chr5	18746155	18746188	18746155	-	High_confidence	20	20	42	2.933032	4.363530	chr5	18746065	18746356	LTR|ERV1|LTR12F	-	chr5	18739922	18746155	STRG.35490.1	-	18739922	18746155	0.833333
spleen_male_adult_37_years	chr3	114624974	114625034	114625006	-	High_confidence	20	22	91	6.354902	4.782443	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.901099
spleen_male_adult_37_years	chr15	57281643	57281654	57281653	+	High_confidence	10	10	18	1.257014	3.169249	chr15	57281447	57281985	DNA|hAT-Charlie|MER1A	+	chr15	57281646	57286420	TCF12|ENST00000561454.1	+	57281646,57282444,57286156	57281792,57282598,57286420	0.944444
spleen_male_adult_37_years	chr5	997305	997319	997318	-	High_confidence	7	7	25	1.745852	3.636842	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.920000
spleen_male_adult_37_years	chr7	107580245	107580267	107580245	+	High_confidence	258	261	1304	91.063646	6.375763	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.957822
spleen_male_adult_37_years	chr13	52429514	52429571	52429514	-	High_confidence	4	4	13	0.907843	3.085055	chr13	52429311	52429618	LINE|L2|L2b	+	chr13	52425769	52429367	VPS36|ENST00000492650.1	-	52425769,52426988,52427186,52429235	52426066,52427066,52427219,52429367	0.538462
spleen_male_adult_37_years	chr7	101217578	101217588	101217578	-	High_confidence	2	2	12	0.838009	3.251629	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101212543	101217622	STRG.53671.2	-	101212543,101212841,101213106,101215088,101215907,101216196,101216409,101216694,101217165	101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217622	0.916667
spleen_male_adult_37_years	chr3	108125046	108125048	108125047	+	High_confidence	24	32	43	3.002866	4.635783	chr3	108124858	108125222	LTR|ERVL-MaLR|THE1C	+	chr3	108125063	108138610	LINC01215|NR_110030.1	+	108125063,108136313	108125142,108138610	0.604651
spleen_male_adult_37_years	chr12	113334824	113334832	113334824	-	High_confidence	5	5	11	0.768175	2.913977	chr12	113334758	113334823	LINE|L2|L2b	-	chr12	113307799	113334833	SLC8B1|ENST00000553238.5	-	113307799,113310233,113315334,113316525,113316941,113318963,113320580,113320849,113321055,113321195,113332722,113334442	113307912,113310355,113315476,113316656,113317001,113319071,113320686,113320907,113321108,113321348,113332960,113334833	1.000000
spleen_male_adult_37_years	chr4	158172987	158173025	158173024	-	High_confidence	47	47	71	4.958220	5.136766	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.788732
spleen_male_adult_37_years	chr1	36481487	36481509	36481489	-	RAMPAGE_only	4	7	18	1.257014	2.821888	chr1	36481405	36481665	SINE|MIR|MIR	+	chr1	36466117	36482899	STRG.1830.10	-	36466117,36467229,36467557,36467821,36468074,36469155,36469651,36471432,36472065,36472237,36472516,36473434,36473763,36475376,36481477,36482810	36466827,36467311,36467651,36467962,36468221,36469257,36469840,36471646,36472139,36472391,36472686,36473622,36473887,36479516,36481537,36482899	1.000000
spleen_male_adult_37_years	chr12	7575242	7575284	7575283	-	RAMPAGE_only	10	10	42	2.933032	4.538751	chr12	7575005	7575582	LINE|L1|L1MB8	+	chr12	7470812	7503893	CD163|ENST00000359156.8	-	7470812,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7503644	7471397,7479996,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7503893	0.642857
spleen_male_adult_37_years	chr13	27212699	27212700	27212699	+	High_confidence	58	61	63	4.399547	3.912290	chr13	27211990	27213118	LTR|ERV1|LTR12D	+	chr13	27212717	27219561	STRG.85492.1	+	27212717,27219346	27213203,27219561	0.968254
spleen_male_adult_37_years	chr2	195659737	195659738	195659737	+	RAMPAGE_only	21	21	25	1.745852	3.286577	chr2	195659592	195659755	SINE|MIR|MIRb	+	chr2	195657448	195680433	SLC39A10|ENST00000418005.1	+	195657448,195680031	195657609,195680433	0.800000
spleen_male_adult_37_years	chr17	63691831	63691844	63691839	+	RAMPAGE_only	5	5	15	1.047511	2.985228	chr17	63691879	63692027	SINE|MIR|MIRc	+	chr17	63622709	63693874	MAP3K3|ENST00000577395.5	+	63622709,63632680,63646033,63652556,63657793,63666939,63681765,63685516,63688526,63688788,63689543,63690263,63691101,63691732,63692241,63693548	63622763,63632802,63646074,63652656,63657907,63667060,63681899,63685578,63688594,63688881,63689735,63690412,63691233,63691862,63692419,63693874	0.800000
spleen_male_adult_37_years	chr12	1080685	1080688	1080687	+	RAMPAGE_only	4	7	8	0.558673	2.521641	chr12	1080490	1080912	LTR|ERVL-MaLR|THE1A	+	chr12	1083140	1444589	ERC1|ENST00000538971.6	+	1083140,1104749,1110191,1115865,1141619,1180539,1181924,1183280,1189858,1204500,1236768,1289851,1371832,1408148,1410388,1444561	1083580,1104824,1110347,1116033,1141787,1180677,1182065,1183421,1190052,1204512,1236904,1290012,1371977,1408247,1410453,1444589	0.750000
spleen_male_adult_37_years	chr3	139344535	139344548	139344547	+	High_confidence	21	21	51	3.561538	4.353308	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.941176
spleen_male_adult_37_years	chr11	111097295	111097338	111097337	-	High_confidence	4	4	11	0.768175	2.663533	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	1.000000
spleen_male_adult_37_years	chr9	97575037	97575040	97575039	+	High_confidence	53	62	80	5.586727	4.618576	chr9	97574036	97575455	LTR|ERV1|LTR12C	+	chr9	97575291	97601544	STRG.66233.1	+	97575291,97591290,97599633	97575486,97591435,97601544	0.737500
spleen_male_adult_37_years	chr12	31804982	31804983	31804982	-	High_confidence	292	294	309	21.578732	5.576844	chr12	31804677	31806355	LTR|ERV1|LTR12C	-	chr12	31801974	31805630	STRG.80426.1	-	31801974,31804674	31802163,31805630	0.893204
spleen_male_adult_37_years	chr9	84368670	84368727	84368670	-	High_confidence	12	12	48	3.352036	4.876629	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84310481	84368704	STRG.65512.1	-	84310481,84313358,84340573,84368451	84310587,84313454,84340678,84368704	0.770833
spleen_male_adult_37_years	chr6	143707921	143707922	143707921	+	RAMPAGE_only	12	15	15	1.047511	3.506891	chr6	143707720	143708120	LTR|ERVL-MaLR|MSTA	-	chr6	143706522	143765474	STRG.48087.6	+	143706522,143712015,143748984,143753753,143760400,143765260	143708093,143712183,143749065,143753912,143760640,143765474	1.000000
spleen_male_adult_37_years	chr16	57129029	57129059	57129029	+	High_confidence	2	2	9	0.628507	2.750000	chr16	57128916	57129133	LINE|L2|L2b	-	chr16	57129051	57147966	CPNE2|ENST00000566910.1	+	57129051,57134774,57137148,57146084,57147550	57129150,57134826,57137282,57146321,57147966	0.888889
spleen_male_adult_37_years	chr15	79004557	79004598	79004597	-	RAMPAGE_only	2	3	7	0.488839	2.807355	chr15	79004565	79004625	SINE|MIR|MIR1_Amn	-	chr15	78959946	79005660	RASGRF1|NM_153815.2	-	78959946,78971865,78973302,78980619,78985006,78990188,78991690,78995739,78998095,78998718,78999742,79001661,79003801,79004716	78962236,78971934,78973420,78980699,78985204,78990273,78991794,78995800,78998208,78998825,78999913,79001787,79004175,79005660	1.000000
spleen_male_adult_37_years	chr14	103931833	103931834	103931833	+	RAMPAGE_only	28	28	33	2.304525	4.280639	chr14	103931646	103932201	LTR|ERVL-MaLR|MLT1E2	+	chr14	103928816	103965481	TDRD9|ENST00000496087.5	+	103928816,103945405,103955663,103963078,103965332	103928923,103945525,103955770,103963176,103965481	0.515152
spleen_male_adult_37_years	chr18	28159255	28159297	28159296	-	High_confidence	8	9	18	1.257014	3.734522	chr18	28159142	28159517	LTR|ERVL|LTR79	+	chr18	28011917	28159297	CDH2|ENST00000413878.1	-	28011917,28013682,28147672,28159148	28011992,28013909,28147784,28159297	0.888889
spleen_male_adult_37_years	chr17	4143196	4143215	4143199	+	High_confidence	34	34	80	5.586727	5.335755	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.962500
spleen_male_adult_37_years	chr16	3129638	3129661	3129638	-	RAMPAGE_only	2	4	11	0.768175	2.921928	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3110459	3134869	ZNF213-AS1|ENST00000572691.2	-	3110459,3114794,3114967,3129247,3131746,3132849,3134633	3110954,3114887,3116519,3129653,3132103,3132942,3134869	0.636364
spleen_male_adult_37_years	chr5	160204805	160204818	160204808	-	High_confidence	12	12	38	2.653695	3.945808	chr5	160204479	160204790	SINE|Alu|AluSq2	-	chr5	160196590	160204826	AC008609.1|ENST00000501818.1	-	160196590,160204721	160199171,160204826	0.763158
spleen_male_adult_37_years	chrX	155612337	155612360	155612359	+	High_confidence	11	13	24	1.676018	3.636842	chrX	155612307	155612443	SINE|MIR|MIR3	-	chrX	155612371	155737184	STRG.121566.1	+	155612371,155736907	155612647,155737184	0.708333
spleen_male_adult_37_years	chr9	120475265	120475283	120475282	-	RAMPAGE_only	7	7	18	1.257014	3.614369	chr9	120475028	120475260	SINE|MIR|MIRb	-	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.888889
spleen_male_adult_37_years	chr12	8567935	8567938	8567937	-	High_confidence	64	130	163	11.382956	5.418651	chr12	8567561	8568746	LTR|ERV1|MER52C	-	chr12	8534580	8567932	STRG.78983.1	-	8534580,8536089,8537114,8539216,8539854,8540760,8567493	8534809,8536205,8537266,8539306,8539947,8541055,8567932	0.815951
spleen_male_adult_37_years	chr1	89272554	89272575	89272574	-	High_confidence	2	2	8	0.558673	2.500000	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89262697	89272804	GBP5|ENST00000443807.1	-	89262697,89263735,89264685,89266345,89266956,89267416,89268728,89269365	89262785,89263948,89264966,89266588,89267153,89267526,89268856,89272804	1.000000
spleen_male_adult_37_years	chr12	110669183	110669204	110669183	-	RAMPAGE_only	6	6	17	1.187179	3.734522	chr12	110669108	110669244	LINE|L2|L2b	+	chr12	110648685	110683267	HVCN1|ENST00000620084.4	-	110648685,110650167,110651216,110655233,110661163,110683224	110649475,110650280,110651448,110655338,110661448,110683267	0.882353
spleen_male_adult_37_years	chr21	34512192	34512220	34512209	-	High_confidence	35	36	107	7.472247	5.731267	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.710280
spleen_male_adult_37_years	chr5	94032912	94032915	94032914	-	RAMPAGE_only	4	6	9	0.628507	2.503258	chr5	94032873	94033236	LTR|ERVL-MaLR|THE1C	+	chr5	93881310	94074771	FAM172A|ENST00000506398.6	-	93881310,93958776,93964457,94050730,94053125,94074645	93881688,93958968,93964523,94050831,94053227,94074771	0.666667
spleen_male_adult_37_years	chr1	28236212	28236243	28236212	+	High_confidence	2	2	8	0.558673	2.521641	chr1	28236202	28236266	LTR|ERVL|LTR16D1	-	chr1	28236153	28238098	ATP5IF1|ENST00000465645.1	+	28236153,28236360	28236270,28238098	0.875000
spleen_male_adult_37_years	chr10	20002839	20002840	20002839	+	RAMPAGE_only	12	12	17	1.187179	3.030639	chr10	20002558	20002860	LINE|L2|L2c	-	chr10	20043319	20280357	PLXDC2|ENST00000377238.2	+	20043319,20046868,20068169,20143294,20147783,20164467,20176998,20177327,20211668,20217425,20219063,20245344,20279702	20043418,20047015,20068239,20143417,20147902,20164567,20177094,20177409,20211729,20217576,20219102,20245505,20280357	0.764706
spleen_male_adult_37_years	chr19	55255762	55255769	55255768	-	High_confidence	23	25	51	3.561538	4.245453	chr19	55255671	55256025	LINE|L2|L2b	+	chr19	55245343	55255769	PPP6R1|ENST00000592242.1	-	55245343,55245491,55246876,55255674	55245402,55245678,55247109,55255769	0.764706
spleen_male_adult_37_years	chr6	143707968	143708002	143707968	+	RAMPAGE_only	70	77	192	13.408144	5.292521	chr6	143707720	143708120	LTR|ERVL-MaLR|MSTA	-	chr6	143706522	143765474	STRG.48087.6	+	143706522,143712015,143748984,143753753,143760400,143765260	143708093,143712183,143749065,143753912,143760640,143765474	0.963542
spleen_male_adult_37_years	chr9	20658597	20658624	20658618	+	High_confidence	3	3	16	1.117345	3.640224	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.500000
spleen_male_adult_37_years	chr20	24930659	24930709	24930691	+	High_confidence	32	33	130	9.078431	5.680356	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930665	24932971	STRG.111509.1	+	24930665,24931346	24930774,24932971	0.946154
spleen_male_adult_37_years	chr19	49867874	49867877	49867874	-	High_confidence	6	6	11	0.768175	2.921928	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49861203	49867886	PNKP|ENST00000322344.7	-	49861203,49861448,49861607,49861771,49862043,49862184,49862370,49862537,49862689,49863688,49863963,49864178,49864323,49865126,49866398,49867053,49867468	49861365,49861510,49861695,49861881,49862105,49862281,49862463,49862608,49862738,49863760,49864071,49864236,49864403,49865426,49866445,49867217,49867886	0.909091
spleen_male_adult_37_years	chr9	37187453	37187492	37187475	+	RAMPAGE_only	5	6	30	2.095023	4.513153	chr9	37187210	37187548	DNA|hAT-Charlie|MER1B	-	chr9	37144931	37356980	ZCCHC7|ENST00000488607.5	+	37144931,37147361,37302187,37304187,37305543,37327798,37349356,37354709,37356834	37144997,37147445,37302231,37304313,37305714,37327834,37349452,37354824,37356980	0.500000
spleen_male_adult_37_years	chr4	39627120	39627121	39627120	-	High_confidence	682	693	754	52.654900	5.554854	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39551784	39627099	STRG.30811.2	-	39551784,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627099	0.923077
spleen_male_adult_37_years	chr3	152335094	152335095	152335094	+	RAMPAGE_only	16	16	16	1.117345	3.000000	chr3	152335017	152335180	DNA|DNA|UCON8	+	chr3	152300197	152465203	STRG.27902.4	+	152300197,152300880,152414940,152432716,152445281,152447619,152455541,152456266,152459270,152462384	152300367,152338673,152415111,152432920,152445539,152447773,152455577,152456361,152459345,152465203	1.000000
spleen_male_adult_37_years	chr12	12927733	12927734	12927733	+	High_confidence	17	17	22	1.536350	3.546439	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.636364
spleen_male_adult_37_years	chr14	73463610	73463625	73463624	-	High_confidence	191	193	356	24.860934	6.748066	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73366896	73463625	AC005280.3|ENST00000556700.5	-	73366896,73409936,73462528,73463474	73366981,73410068,73462689,73463625	0.530899
spleen_male_adult_37_years	chr3	53495168	53495207	53495168	+	High_confidence	3	3	12	0.838009	2.663533	chr3	53495032	53495170	LINE|L2|L2a	+	chr3	53495166	53811406	CACNA1D|ENST00000422281.6	+	53495166,53497151,53501614,53650778,53660132,53665659,53666338,53673022,53702640,53718300,53719754,53722313,53723433,53723791,53726878,53730441,53731076,53732015,53732814,53735373,53740279,53743010,53744739,53745623,53745822,53747301,53749267,53751748,53753571,53761997,53770423,53772832,53774586,53775885,53776602,53776859,53780025,53781565,53786821,53800248,53801057,53803422,53804982,53808648,53809977,53811112	53495233,53497461,53501720,53650918,53660275,53665812,53666535,53673126,53702810,53718388,53719781,53722474,53723659,53723999,53726999,53730556,53731146,53732082,53732962,53735503,53740339,53743117,53744827,53745731,53745875,53747448,53749469,53751907,53753682,53762081,53770552,53772898,53774678,53776045,53776730,53776956,53780128,53781667,53786952,53800365,53801425,53803572,53805146,53808770,53810298,53811406	0.916667
spleen_male_adult_37_years	chr19	51795141	51795187	51795183	+	High_confidence	6	7	16	1.117345	3.250000	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	1.000000
spleen_male_adult_37_years	chr15	92914950	92914974	92914973	+	High_confidence	43	47	112	7.821417	5.780273	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.848214
spleen_male_adult_37_years	chr22	22336752	22336753	22336752	+	RAMPAGE_only	69	88	88	6.145399	5.502172	chr22	22331689	22336920	LINE|L1|L1PA8	+	chr22	22664437	22901437	STRG.115226.7	+	22664437,22758903,22893776,22900980	22664518,22759206,22893822,22901437	0.738636
spleen_male_adult_37_years	chr14	102370475	102370488	102370477	+	High_confidence	4	7	21	1.466516	3.370951	chr14	102370462	102370850	LINE|L2|L2b	-	chr14	102369876	102425272	STRG.92247.4	+	102369876,102376649,102407337,102408487,102414635,102424978	102370962,102376940,102407466,102408619,102414793,102425272	0.952381
spleen_male_adult_37_years	chr1	25562793	25562794	25562793	+	High_confidence	57	57	76	5.307390	5.280179	chr1	25562741	25562929	SINE|MIR|MIRb	+	chr1	25562815	25567000	LDLRAP1|ENST00000484476.5	+	25562815,25563660,25565172,25566847	25563153,25563791,25565207,25567000	0.789474
spleen_male_adult_37_years	chr5	77088107	77088109	77088108	+	High_confidence	3	5	8	0.558673	2.521641	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.500000
spleen_male_adult_37_years	chr15	63497779	63497786	63497785	-	High_confidence	22	28	57	3.980543	4.937810	chr15	63497648	63498105	LINE|L2|L2c	+	chr15	63496027	63497848	STRG.94731.2	-	63496027	63497848	0.614035
spleen_male_adult_37_years	chr7	121138516	121138517	121138516	-	High_confidence	31	31	37	2.583861	4.229327	chr7	121138301	121138528	SINE|5S-Deu-L2|AmnSINE1	+	chr7	121138072	121138644	STRG.54741.1	-	121138072	121138644	0.864865
spleen_male_adult_37_years	chr9	33068829	33068852	33068840	-	RAMPAGE_only	3	4	10	0.698341	2.725481	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.900000
spleen_male_adult_37_years	chr11	44604417	44604418	44604417	+	High_confidence	8	8	8	0.558673	2.500000	chr11	44604327	44604536	SINE|MIR|MIRb	+	chr11	44604427	44619275	CD82|ENST00000530931.1	+	44604427,44605057,44605354,44615271,44618161,44618639,44619048	44604501,44605182,44605429,44615373,44618365,44618723,44619275	0.875000
spleen_male_adult_37_years	chr4	86453161	86453207	86453195	-	High_confidence	29	49	227	15.852337	5.562697	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016074	86453196	MAPK10|ENST00000641854.1	-	86016074,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86107352,86159467,86194407,86354644,86453196	0.881057
spleen_male_adult_37_years	chr11	60327249	60327250	60327249	+	RAMPAGE_only	15	15	18	1.257014	3.683542	chr11	60327087	60327483	LTR|ERVL-MaLR|MLT1A1	+	chr11	60334830	60340968	MS4A6E|ENST00000300182.8	+	60334830,60337740,60339865,60340775	60335042,60337947,60339964,60340968	0.888889
spleen_male_adult_37_years	chr15	61857522	61857592	61857523	-	High_confidence	4	6	17	1.187179	3.734522	chr15	61857144	61857545	LINE|L2|L2c	-	chr15	61854412	61856793	VPS13C|ENST00000559119.1	-	61854412,61854870,61856285	61854558,61854954,61856793	0.529412
spleen_male_adult_37_years	chr8	143558019	143558020	143558019	+	High_confidence	22	22	22	1.536350	3.568084	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.818182
spleen_male_adult_37_years	chr9	89479889	89479890	89479889	-	High_confidence	683	689	698	48.744191	5.275092	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89362238	89479890	SEMA4D|ENST00000537934.5	-	89362238,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89418362,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89418437,89455953,89479890	0.929799
spleen_male_adult_37_years	chr1	206910275	206910291	206910290	-	High_confidence	5	5	9	0.628507	2.641604	chr1	206910225	206910298	DNA|hAT-Ac|OldhAT1	+	chr1	206904524	206909945	FCMR|ENST00000474041.5	-	206904524,206909461,206909724	206905147,206909520,206909945	0.888889
spleen_male_adult_37_years	chr1	66841078	66841082	66841078	-	RAMPAGE_only	12	12	20	1.396682	3.787144	chr1	66840708	66841531	LTR|ERVL|ERVL-B4-int	-	chr1	66837606	66862303	WDR78|ENST00000531552.1	-	66837606,66840468,66862146	66837796,66840671,66862303	0.750000
spleen_male_adult_37_years	chr11	12195909	12195942	12195941	+	High_confidence	5	5	16	1.117345	3.577820	chr11	12195751	12196592	LINE|L2|L2	-	chr11	12195944	12197811	MICAL2|ENST00000532166.5	+	12195944,12197486	12196200,12197811	0.750000
spleen_male_adult_37_years	chr1	152913089	152913110	152913109	-	High_confidence	18	18	37	2.583861	4.440351	chr1	152912987	152913194	LINE|L2|L2	+	chr1	152897908	152913052	STRG.6635.1	-	152897908,152913040	152898866,152913052	0.891892
spleen_male_adult_37_years	chr5	150118764	150118789	150118764	-	RAMPAGE_only	4	4	10	0.698341	2.725481	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.900000
spleen_male_adult_37_years	chr2	233357066	233357098	233357066	+	RAMPAGE_only	10	11	35	2.444193	4.343289	chr2	233356905	233357200	LTR|ERVL|LTR33A_	-	chr2	233354571	233392399	DGKD|ENST00000442524.4	+	233354571,233388256,233390402,233392069	233354674,233388367,233390483,233392399	0.571429
spleen_male_adult_37_years	chr4	70993073	70993074	70993073	+	High_confidence	7	7	8	0.558673	2.521641	chr4	70992983	70993102	SINE|MIR|MIR	+	chr4	70993438	71030914	DCK|ENST00000286648.9	+	70993438,70998066,71022366,71023558,71025815,71026664,71029351	70993926,70998182,71022560,71023706,71025931,71026755,71030914	0.875000
spleen_male_adult_37_years	chr6	7266301	7266325	7266324	+	High_confidence	4	4	15	1.047511	2.896292	chr6	7266135	7266589	LTR|ERVL|LTR41	+	chr6	7266380	7266650	STRG.42220.1	+	7266380	7266650	0.600000
spleen_male_adult_37_years	chr21	33931146	33931157	33931146	+	High_confidence	14	14	28	1.955354	3.218543	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.892857
spleen_male_adult_37_years	chr15	80017760	80017802	80017792	-	RAMPAGE_only	26	32	142	9.916440	4.553707	chr15	80016339	80017800	LTR|ERV1|LTR12C	+	chr15	79960888	79971446	BCL2A1|ENST00000267953.3	-	79960888,79970699	79961174,79971446	0.788732
spleen_male_adult_37_years	chr21	34511352	34511364	34511352	-	High_confidence	3	3	9	0.628507	2.641604	chr21	34511313	34511427	LTR|ERVL-MaLR|MSTD	+	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.888889
spleen_male_adult_37_years	chrY	4036474	4036532	4036474	+	High_confidence	13	17	74	5.167722	4.853663	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	0.905405
spleen_male_adult_37_years	chr7	150567272	150567288	150567272	+	High_confidence	7	7	17	1.187179	3.454822	chr7	150567129	150567290	DNA|hAT-Charlie|MER3	-	chr7	150567276	150573955	GIMAP4|ENST00000255945.3	+	150567276,150569887,150572128	150567437,150569959,150573955	1.000000
spleen_male_adult_37_years	chr2	140785914	140785950	140785949	-	RAMPAGE_only	4	4	14	0.977677	2.753434	chr2	140785621	140786177	LINE|L2|L2c	+	chr2	140231422	142131701	LRP1B|ENST00000389484.7	-	140231422,140234785,140238151,140239441,140247085,140270241,140274423,140297807,140314934,140321962,140323892,140325761,140334452,140335614,140350796,140352952,140356341,140357978,140358820,140364660,140370709,140371178,140373007,140378179,140385892,140442503,140444329,140444562,140450567,140456454,140457462,140475137,140485342,140487616,140492607,140495564,140501686,140502962,140506795,140509927,140514652,140516888,140525843,140526236,140534020,140536580,140540972,140541778,140598630,140601449,140700249,140701720,140702140,140702426,140715972,140716681,140769212,140770880,140776097,140813656,140839990,140840917,140850101,140851651,140867589,140868098,140883816,140886137,140902919,140907876,140922964,140950234,140951859,140982159,140989531,140993994,141005334,141013555,141015695,141019921,141048985,141055115,141058882,141062050,141188420,141229182,141247225,141254521,141480395,141810278,142130647	140233326,140234884,140238296,140239532,140247162,140270346,140274598,140297969,140315099,140322088,140324066,140325878,140334559,140335838,140351038,140353072,140356476,140358116,140358946,140364783,140370842,140371285,140373137,140378286,140386009,140442623,140444449,140444679,140450661,140456603,140457651,140475337,140485524,140487739,140492693,140495748,140501874,140503103,140506918,140510056,140514772,140517011,140525993,140526350,140534140,140536709,140541098,140541971,140598835,140601639,140700621,140701845,140702292,140702553,140716102,140716816,140769344,140771006,140776238,140813806,140840085,140841092,140850329,140851783,140867834,140868263,140884021,140886335,140903165,140908077,140923147,140950402,140951940,140982276,140989657,140994135,141005457,141013745,141015915,141020102,141049222,141055259,141059054,141062273,141188583,141229440,141247354,141254641,141480533,141810401,142131701	1.000000
spleen_male_adult_37_years	chr14	95725406	95725425	95725424	+	RAMPAGE_only	6	6	18	1.257014	3.146286	chr14	95725236	95725714	LINE|L1|L1M1	-	chr14	95715479	95757656	AL139020.1|ENST00000556386.1	+	95715479,95717470,95755244	95715707,95717568,95757656	0.833333
spleen_male_adult_37_years	chr4	139873698	139873770	139873769	+	RAMPAGE_only	28	28	176	12.290799	5.740253	chr4	139873437	139873946	LTR|ERVL-MaLR|MLT1F1	+	chr4	139888581	139890475	STRG.33436.2	+	139888581	139890475	0.625000
spleen_male_adult_37_years	chr9	127531649	127531670	127531649	-	RAMPAGE_only	2	2	9	0.628507	2.725481	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.666667
spleen_male_adult_37_years	chr11	64226142	64226180	64226158	-	High_confidence	67	70	307	21.439064	7.034022	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.983713
spleen_male_adult_37_years	chr5	150640041	150640051	150640050	+	High_confidence	22	22	50	3.491704	5.158563	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150639813	150656722	STRG.40675.5	+	150639813,150647943,150656403	150640134,150650303,150656722	1.000000
spleen_male_adult_37_years	chr8	24324974	24324976	24324975	+	High_confidence	47	69	77	5.377225	4.646633	chr8	24324695	24325068	LTR|ERVL-MaLR|MLT1H1	-	chr8	24325036	24332725	ADAM28|ENST00000521110.1	+	24325036,24326553,24329984,24331149,24332659	24325089,24326635,24330115,24331327,24332725	0.844156
spleen_male_adult_37_years	chr20	23386663	23386699	23386698	-	RAMPAGE_only	8	8	17	1.187179	3.969816	chr20	23386573	23386920	LTR|ERVL|MER77	+	chr20	23371865	23403338	STRG.111482.1	-	23371865,23379444,23379866,23381212,23389945,23390208,23394921,23402992	23377486,23379495,23379935,23381317,23390030,23390264,23394999,23403338	0.764706
spleen_male_adult_37_years	chr17	77390290	77390295	77390294	+	RAMPAGE_only	3	3	7	0.488839	2.521641	chr17	77390212	77390366	SINE|Alu|AluYc	+	chr17	77380122	77402483	SEPT9|ENST00000589140.1	+	77380122,77402058	77380249,77402483	1.000000
spleen_male_adult_37_years	chr2	149006003	149006017	149006003	+	High_confidence	39	40	102	7.123077	4.896779	chr2	149005870	149006070	SINE|MIR|MIRc	-	chr2	149006008	149026758	STRG.16997.4	+	149006008,149007962,149010134,149011569,149023077	149006164,149008067,149010351,149011683,149026758	0.901961
spleen_male_adult_37_years	chr19	40586007	40586015	40586007	+	High_confidence	4	4	14	0.977677	2.610577	chr19	40585909	40586166	SINE|Alu|AluJr	-	chr19	40585572	40590355	SHKBP1|ENST00000597649.5	+	40585572,40586773,40588623,40589081,40590243	40585817,40586944,40588779,40589178,40590355	0.857143
spleen_male_adult_37_years	chr11	64799866	64799903	64799866	-	High_confidence	4	4	24	1.676018	3.788755	chr11	64799729	64799896	SINE|MIR|MIR	-	chr11	64789888	64799659	MAP4K2|ENST00000489952.5	-	64789888,64790187,64790393,64791908,64792171,64796272,64796492,64796633,64796808,64796981,64797103,64797274,64797500,64797625,64798793,64799420,64799604	64789959,64790274,64790462,64792086,64792422,64796390,64796553,64796713,64796893,64797023,64797192,64797380,64797534,64797664,64798837,64799479,64799659	0.833333
spleen_male_adult_37_years	chr4	184382288	184382295	184382294	-	High_confidence	18	18	40	2.793363	4.240405	chr4	184382179	184382738	LTR|ERVL|LTR67B	+	chr4	184372406	184382306	LINC02362|ENST00000608785.1	-	184372406,184376440,184378964,184382133	184372480,184376544,184379129,184382306	0.500000
spleen_male_adult_37_years	chr6	118651542	118651602	118651563	-	High_confidence	18	20	99	6.913574	5.696848	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.959596
spleen_male_adult_37_years	chr6	165605412	165605423	165605414	-	High_confidence	19	37	88	6.145399	4.471295	chr6	165605372	165605626	LINE|L2|L2b	+	chr6	165336154	165605382	STRG.49037.1	-	165336154,165339277,165343390,165379193,165388297,165392645,165395180,165396316,165413500,165416188,165418634,165428657,165430286,165431421,165432973,165435236,165448927,165450241,165482314,165543439,165605109	165336211,165339358,165343502,165379366,165388453,165392796,165395264,165396459,165413687,165416281,165418777,165428709,165430345,165431472,165433129,165435377,165448977,165450362,165482343,165543568,165605382	0.965909
spleen_male_adult_37_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	7	7	7	0.488839	2.807355	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.857143
spleen_male_adult_37_years	chr6	88442895	88442929	88442927	-	High_confidence	86	107	184	12.849472	6.225710	chr6	88442599	88443120	LTR|ERVL-MaLR|MLT1F	-	chr6	88440784	88442929	STRG.45906.8	-	88440784,88442841	88442326,88442929	0.603261
spleen_male_adult_37_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	60	61	84	5.866063	5.273481	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100738442	100913524	ARHGAP42|ENST00000534060.5	+	100738442,100770342,100795104,100816714,100859553,100913451	100738498,100770438,100795166,100816856,100859625,100913524	0.583333
spleen_male_adult_37_years	chr10	65570512	65570522	65570521	+	High_confidence	15	22	35	2.444193	4.317121	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570535	65585775	LINC01515|ENST00000608678.5	+	65570535,65571424,65572934,65581611,65585484	65570759,65571579,65573056,65581673,65585775	0.685714
spleen_male_adult_37_years	chr14	95664784	95664817	95664816	+	High_confidence	12	12	30	2.095023	4.073330	chr14	95664736	95664975	LTR|ERVL-MaLR|MLT1H	-	chr14	95664861	95670414	TCL6|ENST00000486671.1	+	95664861,95668125	95665076,95670414	0.900000
spleen_male_adult_37_years	chr7	55538656	55538664	55538663	-	High_confidence	13	21	36	2.514027	3.063559	chr7	55538614	55538881	LINE|L1|L1ME4b	+	chr7	55471967	55538660	VOPP1|ENST00000625836.2	-	55471967,55492281,55497612,55521071,55538612	55473045,55492418,55497690,55521130,55538660	0.861111
spleen_male_adult_37_years	chr4	55948010	55948022	55948010	-	High_confidence	7	11	20	1.396682	3.884184	chr4	55947862	55947994	LTR|ERV1|MER51D	-	chr4	55938297	55948004	STRG.31099.1	-	55938297,55940516,55947839	55938955,55940632,55948004	0.650000
spleen_male_adult_37_years	chr9	121207783	121207810	121207793	+	High_confidence	13	13	49	3.421870	4.357468	chr9	121207755	121207923	SINE|Alu|AluJb	-	chr9	121207793	121265186	GSN|ENST00000434663.5	+	121207793,121209295,121210235,121210783,121231164,121265153	121207897,121209397,121210329,121210867,121231303,121265186	0.836735
spleen_male_adult_37_years	chr20	44671699	44671720	44671719	-	RAMPAGE_only	5	5	11	0.768175	2.521928	chr20	44671177	44675874	LTR|ERV1|HERVH-int	+	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.818182
spleen_male_adult_37_years	chr15	34154869	34154900	34154899	-	High_confidence	3	3	8	0.558673	2.750000	chr15	34154725	34155010	LTR|ERV1|LTR10A	-	chr15	34147202	34154831	KATNBL1|ENST00000560308.5	-	34147202,34147379,34148631,34152789,34154643	34147289,34147430,34148750,34153069,34154831	1.000000
spleen_male_adult_37_years	chr14	102370540	102370564	102370540	+	High_confidence	2	2	8	0.558673	2.521641	chr14	102370462	102370850	LINE|L2|L2b	-	chr14	102369876	102425272	STRG.92247.4	+	102369876,102376649,102407337,102408487,102414635,102424978	102370962,102376940,102407466,102408619,102414793,102425272	0.875000
spleen_male_adult_37_years	chr19	205234	205235	205234	-	High_confidence	8	8	10	0.698341	3.121928	chr19	205087	205507	DNA|hAT-Charlie|MER1A	-	chr19	201454	205327	LINC01002|ENST00000631797.1	-	201454,201755,203874,205169	201662,201813,204065,205327	0.800000
spleen_male_adult_37_years	chr18	2589118	2589121	2589120	+	RAMPAGE_only	4	6	9	0.628507	2.750000	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	0.888889
spleen_male_adult_37_years	chr3	129559620	129559621	129559620	-	High_confidence	23	23	28	1.955354	4.134336	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	0.964286
spleen_male_adult_37_years	chr3	193614860	193614861	193614860	+	High_confidence	9	9	12	0.838009	2.522055	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	1.000000
spleen_male_adult_37_years	chr12	6787003	6787004	6787003	+	High_confidence	14	15	16	1.117345	3.625000	chr12	6786967	6787079	DNA|hAT-Charlie|MER102c	-	chr12	6786857	6800445	CD4|ENST00000535707.5	+	6786857,6789488,6800071,6800306	6787005,6789662,6800187,6800445	0.562500
spleen_male_adult_37_years	chr17	41108243	41108282	41108281	+	High_confidence	23	24	144	10.056108	5.027540	chr17	41107954	41108546	LTR|ERV1|MER4-int	+	chr17	41108284	41112628	STRG.101756.1	+	41108284,41110003	41108379,41112628	0.965278
spleen_male_adult_37_years	chr9	111284841	111284875	111284874	-	High_confidence	35	35	67	4.678884	4.682028	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.761194
spleen_male_adult_37_years	chr19	39341554	39341576	39341554	-	High_confidence	7	7	21	1.466516	3.408695	chr19	39340883	39341633	LINE|L2|L2	+	chr19	39328361	39342372	GMFG|ENST00000600322.5	-	39328361,39328999,39329543,39333076,39335260,39335434,39342291	39328548,39329073,39329626,39333126,39335310,39335531,39342372	0.904762
spleen_male_adult_37_years	chr16	4355592	4355593	4355592	-	High_confidence	64	66	66	4.609050	5.128524	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.787879
spleen_male_adult_37_years	chr13	46374790	46374833	46374832	-	RAMPAGE_only	7	7	15	1.047511	3.378783	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46371940	46378645	RUBCNL|ENST00000439642.1	-	46371940,46377889,46378446	46372597,46378005,46378645	0.800000
spleen_male_adult_37_years	chr2	201115961	201115998	201115961	+	High_confidence	2	2	7	0.488839	2.521641	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.714286
spleen_male_adult_37_years	chr3	130548660	130548663	130548662	+	High_confidence	11	20	28	1.955354	3.661933	chr3	130548092	130549017	LINE|L1|L1MC4	-	chr3	130548680	130565349	STRG.26803.2	+	130548680,130560123,130560333,130563067,130564993	130548838,130560202,130560428,130563664,130565349	0.964286
spleen_male_adult_37_years	chr9	77944995	77945041	77945016	-	RAMPAGE_only	13	14	36	2.514027	4.461320	chr9	77944910	77945186	DNA|TcMar-Tigger|Tigger19b	+	chr9	77797527	78030604	GNAQ|ENST00000411677.1	-	77797527,77815615,77922160,78030514	77797648,77815770,77922345,78030604	0.777778
spleen_male_adult_37_years	chr4	86453326	86453399	86453386	-	High_confidence	7	7	44	3.072700	4.102179	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015268	86453387	MAPK10|ENST00000641657.1	-	86015268,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453387	0.931818
spleen_male_adult_37_years	chr14	89486659	89486694	89486693	-	RAMPAGE_only	5	5	20	1.396682	3.284184	chr14	89486513	89486649	SINE|5S-Deu-L2|AmnSINE1	-	chr14	89161384	89417112	FOXN3|ENST00000557258.5	-	89161384,89180700,89280949,89350671,89411933,89416870	89162969,89180806,89281014,89350808,89412490,89417112	0.750000
spleen_male_adult_37_years	chr12	883795	883830	883829	+	RAMPAGE_only	6	7	24	1.676018	3.767894	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	753055	911300	STRG.78405.2	+	753055,813641,827041,830002,857160,859244,861012,862082,871264,878214,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846,908474	754324,813814,827262,830160,857249,859464,861343,862270,871348,878361,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,908034,911300	0.958333
spleen_male_adult_37_years	chr3	14945679	14945768	14945767	-	RAMPAGE_only	26	26	86	6.005731	4.971935	chr3	14945072	14946290	DNA|TcMar-Mariner|HSMAR1	-	chr3	14942778	14947505	FGD5-AS1|NR_046252.1	-	14942778,14947086	14946154,14947505	0.965116
spleen_male_adult_37_years	chr15	44662617	44662623	44662622	-	RAMPAGE_only	8	8	17	1.187179	3.452820	chr15	44662388	44662674	SINE|Alu|AluJb	+	chr15	44563120	44663647	SPG11|ENST00000427534.6	-	44563120,44567423,44569397,44570524,44572682,44573546,44574901,44583813,44585635,44589251,44592330,44595258,44596082,44596783,44598264,44598630,44600466,44606024,44608443,44610839,44613429,44615362,44620189,44621758,44622219,44622727,44626330,44628668,44629232,44633504,44648865,44651490,44652128,44657094,44659078,44660431,44663390	44563301,44567592,44569505,44570658,44572820,44573745,44575041,44584558,44585850,44589414,44592438,44595459,44596355,44596943,44598373,44598836,44600632,44606091,44608605,44610985,44613536,44615566,44620403,44621934,44622347,44622799,44626507,44628844,44629388,44633637,44649011,44651939,44652266,44657296,44659303,44660616,44663647	0.882353
spleen_male_adult_37_years	chr5	140633670	140633680	140633670	-	High_confidence	2	2	7	0.488839	2.807355	chr5	140633624	140633721	LINE|CR1|L3	+	chr5	140632343	140633651	CD14|ENST00000498971.6	-	140632343,140633068,140633530	140632980,140633192,140633651	0.571429
spleen_male_adult_37_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	21	21	21	1.466516	3.784942	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
spleen_male_adult_37_years	chr19	45524130	45524140	45524130	+	RAMPAGE_only	13	13	22	1.536350	3.077573	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.772727
spleen_male_adult_37_years	chr19	44914321	44914322	44914321	+	High_confidence	28	28	36	2.514027	4.240157	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914246	44919342	APOC1|ENST00000588750.5	+	44914246,44914671,44914871,44916189,44919172	44914489,44914733,44914949,44916325,44919342	0.944444
spleen_male_adult_37_years	chr1	202471468	202471500	202471495	+	RAMPAGE_only	20	20	59	4.120211	4.967720	chr1	202470938	202471780	LINE|L1|L1ME3Cz	-	chr1	202462742	202581152	PPP1R12B|ENST00000491336.5	+	202462742,202488532,202493113,202495292,202495569,202496780,202558876,202562777,202564442,202567777,202569146,202580473	202463097,202488623,202493317,202495482,202495682,202496822,202558893,202562922,202564547,202567831,202569197,202581152	0.949153
spleen_male_adult_37_years	chr2	6918647	6918680	6918679	-	High_confidence	36	37	102	7.123077	5.577830	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.843137
spleen_male_adult_37_years	chr12	127060613	127060614	127060613	+	High_confidence	11	15	15	1.047511	3.240224	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060474	127120143	STRG.84987.1	+	127060474,127119553	127061334,127120143	0.866667
spleen_male_adult_37_years	chr19	33395177	33395191	33395177	-	High_confidence	26	28	46	3.212368	4.815459	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	0.934783
spleen_male_adult_37_years	chr6	6587361	6587362	6587361	-	High_confidence	31	36	40	2.793363	4.833873	chr6	6587337	6587525	DNA|hAT-Charlie|MER5A	-	chr6	6562193	6587383	STRG.42203.1	-	6562193,6569417,6587187	6564388,6569489,6587383	0.650000
spleen_male_adult_37_years	chr12	10411571	10411583	10411580	-	RAMPAGE_only	5	5	20	1.396682	3.787144	chr12	10411404	10411606	SINE|Alu|AluYj4	+	chr12	10410024	10435993	STRG.79148.16	-	10410024,10415703,10416666,10434485,10435311,10435799	10412616,10415794,10418498,10434530,10435410,10435993	0.650000
spleen_male_adult_37_years	chr11	914676	914682	914676	-	High_confidence	5	5	17	1.187179	3.499228	chr11	914587	914736	SINE|Alu|AluJb	+	chr11	904736	914774	CHID1|ENST00000528154.1	-	904736,914303	904859,914774	0.941176
spleen_male_adult_37_years	chr2	64015542	64015547	64015546	-	RAMPAGE_only	4	4	11	0.768175	2.913977	chr2	64015505	64015679	DNA|hAT-Charlie|MER20	-	chr2	63893055	64019072	VPS54|ENST00000272322.8	-	63893055,63897495,63899473,63912344,63912539,63913222,63914181,63916899,63919882,63920445,63921205,63933672,63942464,63944599,63947382,63949036,63962057,63965834,63968956,63972165,63981645,63983863,64018937	63893535,63897590,63899581,63912425,63912661,63913310,63914287,63916963,63919995,63920627,63921335,63934013,63942561,63944655,63947490,63949163,63962443,63965966,63968991,63972244,63981887,63984019,64019072	0.909091
spleen_male_adult_37_years	chr20	48684683	48684734	48684719	-	RAMPAGE_only	3	3	16	1.117345	3.323231	chr20	48684672	48685218	LINE|L2|L2a	+	chr20	48624251	48827883	PREX1|ENST00000371941.3	-	48624251,48627547,48627860,48629448,48630727,48632276,48632495,48634675,48636462,48637710,48639765,48642167,48642406,48644408,48645850,48649299,48649995,48650893,48651395,48652585,48653360,48655289,48657039,48658135,48659918,48666282,48676192,48679359,48679650,48681234,48688656,48690946,48692671,48700752,48708259,48726289,48734545,48745024,48747808,48827641	48625927,48627615,48627963,48629621,48630794,48632391,48632639,48634775,48636683,48637752,48639894,48642258,48642489,48644497,48646057,48649576,48650206,48651055,48651583,48652706,48653497,48655375,48657188,48658228,48660061,48666355,48676268,48679409,48679754,48681335,48688804,48691096,48692790,48700886,48708421,48726391,48734650,48745147,48747880,48827883	0.875000
spleen_male_adult_37_years	chr11	118700427	118700457	118700456	+	High_confidence	5	5	18	1.257014	3.149673	chr11	118700359	118700777	LTR|ERVL-MaLR|MLT1H	+	chr11	118700426	118708848	AP002954.1|ENST00000646572.1	+	118700426,118704607,118708381	118700643,118704838,118708848	0.888889
spleen_male_adult_37_years	chr8	23243692	23243703	23243692	+	High_confidence	3	3	9	0.628507	2.503258	chr8	23243551	23243732	LTR|ERV1|LTR21A	+	chr8	23243636	23262000	CHMP7|NM_152272.4	+	23243636,23246255,23249209,23255246,23256459,23258032,23258329,23258731,23259065,23260143,23260537	23243844,23246994,23249381,23255432,23256593,23258081,23258449,23258830,23259126,23260323,23262000	0.555556
spleen_male_adult_37_years	chr5	139364647	139364670	139364647	+	RAMPAGE_only	4	4	12	0.838009	2.855389	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.666667
spleen_male_adult_37_years	chr17	64077484	64077487	64077486	-	RAMPAGE_only	5	7	9	0.628507	2.503258	chr17	64077306	64077742	LINE|L1|L1ME3A	-	chr17	64068236	64080474	ERN1|ENST00000577567.5	-	64068236,64071980,64075174,64079661,64080400	64068291,64072103,64075247,64079734,64080474	0.777778
spleen_male_adult_37_years	chr1	78620057	78620058	78620057	+	High_confidence	13	19	19	1.326848	2.760314	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.894737
spleen_male_adult_37_years	chr13	99496638	99496639	99496638	-	High_confidence	7	7	7	0.488839	2.521641	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99496249	99496626	STRG.87766.1	-	99496249	99496626	0.714286
spleen_male_adult_37_years	chr5	150103476	150103486	150103485	-	RAMPAGE_only	7	7	12	0.838009	3.095795	chr5	150103287	150103597	LINE|CR1|L3	-	chr5	150053290	150113372	CSF1R|NM_005211.3	-	150053290,150054321,150055236,150056025,150056218,150057286,150057503,150059699,150060861,150061490,150061722,150068214,150069872,150070181,150070455,150073300,150077275,150078111,150080051,150080766,150086378,150113260	150054224,150054430,150055336,150056137,150056341,150057384,150057592,150059862,150060972,150061595,150061849,150068330,150070063,150070302,150070571,150073493,150077435,150078248,150080336,150081024,150086607,150113372	0.666667
spleen_male_adult_37_years	chr12	9645292	9645307	9645304	+	RAMPAGE_only	4	4	15	1.047511	2.789898	chr12	9645124	9645474	LTR|ERVL-MaLR|THE1B	+	chr12	9642871	9657070	AC010186.4|ENST00000573622.1	+	9642871,9653682,9655872,9656920	9643103,9653808,9655979,9657070	0.600000
spleen_male_adult_37_years	chr2	7023737	7023792	7023778	+	RAMPAGE_only	8	8	26	1.815686	4.056021	chr2	7023743	7023814	SINE|MIR|MIRc	-	chr2	6996939	7068286	RNF144A|ENST00000432850.1	+	6996939,7014453,7014711,7020472,7024368,7030125,7068215	6997061,7014558,7014772,7020680,7024516,7030215,7068286	0.653846
spleen_male_adult_37_years	chr12	29209023	29209030	29209023	+	RAMPAGE_only	46	48	83	5.796229	4.238689	chr12	29208990	29209077	LINE|L2|L2	-	chr12	29223622	29335616	FAR2|NM_018099.4	+	29223622,29270411,29293299,29297020,29307657,29309185,29311027,29311882,29316840,29321794,29332599,29333631	29223894,29270638,29293475,29297200,29307835,29309230,29311146,29311950,29317012,29321924,29332727,29335616	0.722892
spleen_male_adult_37_years	chr3	47715312	47715330	47715312	-	RAMPAGE_only	3	3	7	0.488839	2.521641	chr3	47714857	47715948	LINE|L2|L2a	+	chr3	47585887	47781915	SMARCC1|NM_003074.3	-	47585887,47590660,47610065,47622206,47635189,47636021,47638724,47661293,47662333,47670657,47675474,47676628,47678197,47680436,47686048,47689386,47693240,47701277,47706408,47710682,47714414,47720665,47729024,47736033,47738028,47745907,47772816,47781602	47588306,47590837,47610327,47622341,47635344,47636136,47638780,47661455,47662592,47670717,47675588,47676782,47678311,47680508,47686170,47689424,47693300,47701402,47706530,47710808,47714490,47720735,47729094,47736126,47738110,47745993,47772936,47781915	0.571429
spleen_male_adult_37_years	chr12	48918144	48918145	48918144	+	High_confidence	12	15	16	1.117345	3.006239	chr12	48917875	48918167	DNA|hAT-Charlie|MER102b	+	chr12	48918143	48920963	CCDC65|ENST00000552188.1	+	48918143,48918684,48920929	48918472,48918903,48920963	0.812500
spleen_male_adult_37_years	chr12	8672518	8672519	8672518	-	RAMPAGE_only	37	37	42	2.933032	4.918528	chr12	8672365	8672715	LTR|ERVL-MaLR|THE1A	-	chr12	8645942	8662888	MFAP5|NM_003480.3	-	8645942,8649500,8650501,8651661,8654436,8655414,8655785,8660862,8662046,8662626	8648203,8649574,8650589,8651691,8654481,8655447,8655830,8660898,8662106,8662888	0.857143
spleen_male_adult_37_years	chr17	59619894	59619929	59619894	+	High_confidence	1120	1317	4659	325.357001	5.215367	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.978322
spleen_male_adult_37_years	chr2	207662375	207662378	207662375	+	High_confidence	338	346	634	44.274810	5.395603	chr2	207662277	207662604	LTR|ERVL-MaLR|MLT1A1	+	chr2	207662374	207667024	LINC01857|ENST00000429730.1	+	207662374,207666680	207662522,207667024	0.930599
spleen_male_adult_37_years	chr6	111844934	111844935	111844934	-	High_confidence	15	16	16	1.117345	2.739572	chr6	111844923	111845004	SINE|MIR|MIR3	-	chr6	111708016	111844944	FYN|ENST00000523570.5	-	111708016,111714346,111719804,111780565,111844776	111708020,111714443,111720062,111780635,111844944	0.875000
spleen_male_adult_37_years	chr1	89272843	89272887	89272859	-	High_confidence	247	258	1735	121.162137	6.452541	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.961960
spleen_male_adult_37_years	chr3	48479458	48479551	48479542	-	High_confidence	10	18	76	5.307390	5.255225	chr3	48479425	48479570	LINE|L1|L1M4	+	chr3	48469359	48479559	SHISA5|ENST00000486344.5	-	48469359,48469727,48479176	48469573,48469843,48479559	0.947368
spleen_male_adult_37_years	chr10	74969662	74969700	74969699	+	RAMPAGE_only	4	4	10	0.698341	2.641604	chr10	74969693	74969726	LINE|L2|L2a	-	chr10	74842619	75022125	KAT6B|ENST00000648369.1	+	74842619,74959969,74969659,74970019,74972506,74975398,74977315,74979223,74981786,74985079,75020581,75021125,75021880	74843478,74960078,74969775,74970101,74972639,74976330,74977437,74979339,74981928,74985241,75020813,75021285,75022125	0.900000
spleen_male_adult_37_years	chr4	55947926	55947972	55947971	-	High_confidence	8	12	41	2.863197	4.900116	chr4	55947862	55947994	LTR|ERV1|MER51D	-	chr4	55938297	55948004	STRG.31099.1	-	55938297,55940516,55947839	55938955,55940632,55948004	0.585366
spleen_male_adult_37_years	chr10	72355126	72355146	72355145	-	High_confidence	9	9	18	1.257014	3.381580	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.944444
spleen_male_adult_37_years	chr19	50016120	50016153	50016120	-	RAMPAGE_only	3	3	11	0.768175	2.550341	chr19	50016092	50016166	DNA|hAT-Ac|OldhAT1	-	chr19	49994862	50020647	VRK3|ENST00000599342.5	-	49994862,50000789,50007568,50009235,50015731,50016023,50020584	49994919,50000854,50007826,50009385,50015793,50016163,50020647	1.000000
spleen_male_adult_37_years	chr10	100291414	100291440	100291428	-	High_confidence	8	9	33	2.304525	4.250000	chr10	100291357	100291454	SINE|MIR|MIR1_Amn	+	chr10	100290029	100291498	STRG.71617.1	-	100290029,100291300	100290138,100291498	0.545455
spleen_male_adult_37_years	chr3	44439852	44439897	44439852	-	High_confidence	51	73	373	26.048114	6.445864	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421126	44439917	C3orf86|ENST00000636468.1	-	44421126,44439796	44421813,44439917	0.603217
spleen_male_adult_37_years	chr6	31587201	31587275	31587274	+	High_confidence	190	211	769	53.702411	5.673608	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	0.885566
spleen_male_adult_37_years	chr11	307588	307621	307620	+	High_confidence	12	17	37	2.583861	4.084868	chr11	307491	307788	SINE|Alu|AluY	-	chr11	307630	309230	IFITM2|ENST00000533141.1	+	307630,308230,309012	307792,308438,309230	0.864865
spleen_male_adult_37_years	chr12	26832795	26832798	26832797	-	High_confidence	9	11	17	1.187179	2.702820	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26716161	26832786	ITPR2|ENST00000545235.1	-	26716161,26722396,26724655,26725649,26832689	26716242,26722555,26724742,26725765,26832786	0.941176
spleen_male_adult_37_years	chr1	89127431	89127432	89127431	-	High_confidence	161	161	164	11.452790	5.130744	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89126750	89127183	STRG.4622.7	-	89126750	89127183	0.829268
spleen_male_adult_37_years	chr7	102973265	102973291	102973265	-	High_confidence	48	49	75	5.237556	5.036308	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102883571	102973219	FBXL13|ENST00000477915.5	-	102883571,102884213,102913085,102926273,102963532,102968021,102973149	102883685,102884312,102913215,102926374,102963665,102968117,102973219	0.586667
spleen_male_adult_37_years	chr22	21940680	21940681	21940680	-	High_confidence	9	10	13	0.907843	3.188722	chr22	21940485	21940733	LTR|ERVL-MaLR|MLT1C	+	chr22	21931265	21940657	PPM1F|ENST00000445205.1	-	21931265,21933390,21934023,21939531,21940574	21931291,21933579,21934226,21939680,21940657	0.923077
spleen_male_adult_37_years	chr12	8567589	8567631	8567589	-	High_confidence	5	5	19	1.326848	3.681881	chr12	8567561	8568746	LTR|ERV1|MER52C	-	chr12	8534580	8567932	STRG.78983.1	-	8534580,8536089,8537114,8539216,8539854,8540760,8567493	8534809,8536205,8537266,8539306,8539947,8541055,8567932	0.526316
spleen_male_adult_37_years	chr11	75777646	75777654	75777653	+	RAMPAGE_only	3	3	11	0.768175	2.721928	chr11	75777470	75777673	SINE|MIR|MIRc	-	chr11	75784395	75796511	DGAT2|ENST00000605099.1	+	75784395,75784617,75790187,75790660,75796327	75784487,75784746,75790295,75790731,75796511	0.818182
spleen_male_adult_37_years	chr16	5058787	5058789	5058787	-	High_confidence	5	9	12	0.838009	2.845351	chr16	5058754	5058790	DNA|hAT|MER53	-	chr16	5047877	5058620	C16orf89|ENST00000592343.1	-	5047877,5055245,5056052,5058492	5047964,5055350,5056188,5058620	0.583333
spleen_male_adult_37_years	chr1	152143705	152143752	152143705	-	RAMPAGE_only	2	3	10	0.698341	2.721928	chr1	152143120	152143960	LINE|L1|L1MA10	-	chr1	152106316	152115454	TCHH|ENST00000614923.1	-	152106316,152113942,152115390	152113078,152114111,152115454	1.000000
spleen_male_adult_37_years	chr8	85378054	85378055	85378054	-	High_confidence	8	8	9	0.628507	2.500000	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85333526	85378108	CA1|ENST00000521846.5	-	85333526,85336944,85338251,85341598,85342748,85351730,85378045	85333620,85337063,85338449,85341659,85342825,85351784,85378108	0.888889
spleen_male_adult_37_years	chr2	37599931	37599939	37599938	+	High_confidence	6	6	10	0.698341	2.846439	chr2	37594197	37600327	LINE|L1|L1PA6	-	chr2	37599896	37600912	STRG.12614.1	+	37599896	37600912	0.900000
spleen_male_adult_37_years	chr11	41497443	41497486	41497485	-	RAMPAGE_only	14	14	49	3.421870	3.699294	chr11	41497463	41497555	DNA|TcMar-Tigger|Tigger7	+	chr11	40648223	41459636	LRRC4C|ENST00000534577.1	-	40648223,40933634,41222796,41459430	40648278,40933723,41223008,41459636	0.795918
spleen_male_adult_37_years	chr4	2867814	2867851	2867814	+	High_confidence	18	20	62	4.329713	5.105338	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.983871
spleen_male_adult_37_years	chr12	50923951	50923981	50923951	+	High_confidence	11	20	74	5.167722	4.940100	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50924004	50929955	METTL7A|ENST00000550502.1	+	50924004,50925036,50929913	50924080,50925536,50929955	0.621622
spleen_male_adult_37_years	chr2	174493815	174493828	174493815	-	RAMPAGE_only	3	3	7	0.488839	2.521641	chr2	174493788	174493893	LINE|L2|L2a	+	chr2	174434151	174487094	GPR155|ENST00000392551.6	-	174434151,174439897,174442118,174445080,174446610,174453736,174459877,174461401,174461587,174465784,174466543,174468911,174470389,174472964,174481496,174482872,174486872	174436416,174440035,174442183,174445176,174446747,174453841,174460088,174461492,174461672,174465902,174466627,174469067,174470555,174473364,174481987,174482918,174487094	0.714286
spleen_male_adult_37_years	chr7	130314536	130314559	130314536	+	High_confidence	6	6	14	0.977677	3.180833	chr7	130313058	130316655	LTR|ERV1|HERVFH19-int	-	chr7	130314548	130314939	STRG.54907.1	+	130314548	130314939	0.642857
spleen_male_adult_37_years	chr14	95516119	95516123	95516122	+	High_confidence	24	50	81	5.656561	5.124851	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.925926
spleen_male_adult_37_years	chr17	77127869	77127873	77127872	+	High_confidence	13	13	27	1.885520	4.106377	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.666667
spleen_male_adult_37_years	chr4	4269605	4269614	4269609	-	High_confidence	266	291	807	56.356106	4.309969	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4269887	STRG.29460.2	-	4267700,4268529,4269428	4268023,4268615,4269887	0.987608
spleen_male_adult_37_years	chr7	6590262	6590293	6590292	+	High_confidence	8	8	28	1.955354	4.004344	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.500000
spleen_male_adult_37_years	chr7	45027006	45027065	45027064	+	High_confidence	4	7	20	1.396682	3.446439	chr7	45026988	45027096	SINE|MIR|MIR3	-	chr7	45027025	45076451	CCM2|ENST00000475551.5	+	45027025,45038252,45063917,45064462,45068442,45069825,45072725,45073459,45074269,45075776	45027797,45038426,45064001,45064646,45068579,45069961,45072783,45073571,45074408,45076451	1.000000
spleen_male_adult_37_years	chr19	51763492	51763497	51763492	+	High_confidence	5	5	12	0.838009	2.522055	chr19	51762691	51763751	LINE|L2|L2a	-	chr19	51763388	51770526	FPR2|NM_001462.3	+	51763388,51768644	51763517,51770526	1.000000
spleen_male_adult_37_years	chr3	58136120	58136155	58136154	+	RAMPAGE_only	5	5	14	0.977677	2.661226	chr3	58136192	58136456	SINE|MIR|MIRb	+	chr3	58132077	58172251	FLNB|ENST00000481470.5	+	58132077,58134615,58135978,58138281,58142649,58143472,58145920,58146819,58148205,58148648,58149849,58150104,58153374,58154790,58155959,58159553,58163153,58168439,58170574	58132931,58134772,58136168,58138529,58142752,58143613,58146049,58146993,58148364,58148852,58150002,58150227,58153641,58154928,58156075,58159686,58163330,58169793,58172251	0.857143
spleen_male_adult_37_years	chr19	7642301	7642328	7642301	+	High_confidence	6	7	33	2.304525	3.913910	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.727273
spleen_male_adult_37_years	chr1	36475914	36475934	36475914	-	High_confidence	7	7	12	0.838009	2.855389	chr1	36475856	36476048	DNA|hAT-Blackjack|MER63A	-	chr1	36466043	36476327	CSF3R|ENST00000480825.6	-	36466043,36467557,36467821,36469651,36471432,36472237,36472516,36473718,36475376	36467311,36467651,36469257,36469840,36472139,36472391,36473622,36473887,36476327	1.000000
spleen_male_adult_37_years	chr12	119181276	119181289	119181276	+	RAMPAGE_only	3	3	11	0.768175	3.121928	chr12	119181138	119181588	LTR|ERV1|MER4A1	-	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.909091
spleen_male_adult_37_years	chr19	49086520	49086547	49086520	+	High_confidence	33	33	59	4.120211	4.603254	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49108479	STRG.109586.6	+	49086523,49090290,49090465,49098426,49098641,49101389,49102113,49103513,49107624,49107794	49086561,49090353,49090520,49098491,49098704,49101471,49103123,49104735,49107712,49108479	0.966102
spleen_male_adult_37_years	chr8	129786075	129786092	129786075	-	High_confidence	3	3	8	0.558673	2.750000	chr8	129786052	129786345	SINE|Alu|AluSg7	+	chr8	129705337	129786607	STRG.61919.1	-	129705337,129707047,129748445,129749451,129749989,129750430,129751541,129751861,129752105,129752697,129760544,129762625,129765733,129776101,129777367,129786010	129706606,129707182,129748888,129749525,129750119,129750570,129751568,129751891,129752147,129752820,129760589,129762731,129765793,129776285,129777591,129786607	1.000000
spleen_male_adult_37_years	chr3	143824516	143824541	143824521	-	RAMPAGE_only	4	4	17	1.187179	3.452820	chr3	143824344	143824714	LINE|L2|L2a	+	chr3	143265221	143848531	SLC9A9|ENST00000316549.10	-	143265221,143268874,143363483,143382059,143467036,143493652,143495334,143552361,143574087,143578584,143652254,143693191,143795000,143796825,143832018,143848147	143266929,143268980,143363563,143382114,143467190,143493764,143495448,143552450,143574193,143578723,143652360,143693307,143795077,143796903,143832221,143848531	0.529412
spleen_male_adult_37_years	chr10	59578772	59578802	59578801	+	High_confidence	6	6	11	0.768175	2.732159	chr10	59578519	59579195	LINE|L1|L1MDa	-	chr10	59578466	59596363	AC026391.1|ENST00000647375.1	+	59578466,59594951,59596324	59579076,59595051,59596363	0.727273
spleen_male_adult_37_years	chrY	6599076	6599095	6599076	+	RAMPAGE_only	9	9	22	1.536350	3.653757	chrY	6598551	6599231	LTR|ERV1|MER50B	+	chrY	6662611	6663845	STRG.121624.1	+	6662611	6663845	0.863636
spleen_male_adult_37_years	chr1	37893871	37893872	37893871	-	RAMPAGE_only	13	13	14	0.977677	2.719295	chr1	37893462	37893926	LINE|L2|L2c	+	chr1	37885508	37888344	INPP5B|ENST00000467066.1	-	37885508,37886887,37887350,37888242	37885825,37887004,37887465,37888344	0.785714
spleen_male_adult_37_years	chr2	85777704	85777715	85777704	+	RAMPAGE_only	6	7	21	1.466516	3.820889	chr2	85777710	85777843	LINE|L2|L2c	+	chr2	85781033	85788039	ATOH8|ENST00000489682.1	+	85781033,85786884	85781166,85788039	0.714286
spleen_male_adult_37_years	chr21	39011237	39011259	39011237	+	High_confidence	8	17	37	2.583861	4.668913	chr21	39011232	39011369	LINE|L2|L2	-	chr21	39010847	39015232	STRG.114111.1	+	39010847,39014621	39011322,39015232	0.756757
spleen_male_adult_37_years	chr8	8244527	8244555	8244527	-	High_confidence	6	6	21	1.466516	4.011365	chr8	8244455	8244522	LTR|ERV1|MER57A-int	-	chr8	8237673	8244667	ALG1L13P|ENST00000523017.5	-	8237673,8238190,8239494,8240428,8241321,8242786,8244459	8237719,8238301,8239554,8240549,8241400,8242926,8244667	0.809524
spleen_male_adult_37_years	chr1	167551551	167551571	167551551	-	RAMPAGE_only	6	6	13	0.907843	2.661226	chr1	167551473	167551609	SINE|MIR|MIRc	+	chr1	167541012	167553767	CREG1|ENST00000370509.4	-	167541012,167546100,167548001,167553387	167542301,167546285,167548121,167553767	0.923077
spleen_male_adult_37_years	chrX	23953267	23953293	23953267	-	RAMPAGE_only	5	6	21	1.466516	3.511085	chrX	23953034	23953533	LTR|ERVL|LTR16C	+	chrX	23833347	23907940	APOO|NR_026545.2	-	23833347,23840312,23856301,23858641,23868592,23878914,23880844,23907693	23833510,23840377,23856382,23858733,23868688,23879034,23880952,23907940	0.571429
spleen_male_adult_37_years	chr19	40754481	40754504	40754503	+	RAMPAGE_only	7	7	17	1.187179	3.263933	chr19	40754454	40754694	LINE|L2|L2c	-	chr19	40757035	40759640	SNRPA|ENST00000598452.1	+	40757035,40759430	40757504,40759640	0.647059
spleen_male_adult_37_years	chrX	5726193	5726256	5726193	-	High_confidence	15	15	33	2.304525	4.256515	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.939394
spleen_male_adult_37_years	chr3	128651528	128651529	128651528	-	High_confidence	12	12	16	1.117345	2.952820	chr3	128651508	128651582	LINE|L1|L1MC4a	+	chr3	128632120	128651529	RPN1|ENST00000495462.5	-	128632120,128637798,128644918,128651372	128632157,128638105,128644983,128651529	1.000000
spleen_male_adult_37_years	chr5	50443255	50443319	50443318	-	High_confidence	31	31	126	8.799095	6.262684	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.642857
spleen_male_adult_37_years	chr10	96737542	96737554	96737542	+	RAMPAGE_only	10	13	25	1.745852	3.943465	chr10	96737353	96737687	LTR|ERVL-MaLR|THE1D	+	chr10	96750265	96750923	RPL13AP5|NR_026712.1	+	96750265	96750923	0.640000
spleen_male_adult_37_years	chr5	157107308	157107317	157107316	-	High_confidence	5	6	13	0.907843	3.026987	chr5	157107099	157107287	DNA|hAT-Charlie|MER5A	-	chr5	157106653	157107302	HAVCR2|ENST00000517358.1	-	157106653,157107045	157106962,157107302	0.692308
spleen_male_adult_37_years	chr5	171400152	171400201	171400152	+	High_confidence	2	3	15	1.047511	3.456565	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171400785	171405732	NPM1|ENST00000519955.1	+	171400785,171405301	171400925,171405732	0.733333
spleen_male_adult_37_years	chr16	29154279	29154316	29154311	+	RAMPAGE_only	5	5	17	1.187179	3.169249	chr16	29154014	29154324	LINE|L1|L1MD2	+	chr16	29152300	29252930	STRG.98380.9	+	29152300,29251478	29154885,29252930	1.000000
spleen_male_adult_37_years	chr16	65053820	65053883	65053820	-	RAMPAGE_only	3	3	19	1.326848	3.826875	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.736842
spleen_male_adult_37_years	chr15	75347042	75347082	75347042	+	High_confidence	8	8	43	3.002866	4.295353	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.511628
spleen_male_adult_37_years	chr12	119184126	119184128	119184126	-	High_confidence	13	22	29	2.025188	3.978334	chr12	119183922	119184154	SINE|MIR|MIRc	-	chr12	119181370	119184064	STRG.84510.1	-	119181370,119182873,119183926	119182179,119183021,119184064	1.000000
spleen_male_adult_37_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	12	12	12	0.838009	3.022055	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
spleen_male_adult_37_years	chr2	70019009	70019060	70019030	-	High_confidence	4	4	16	1.117345	3.202820	chr2	70018191	70020062	LINE|L1|L1MA8	+	chr2	69988740	70019188	PCBP1-AS1|ENST00000626769.2	-	69988740,69996685,70015447,70018014,70019137	69988838,69996888,70015580,70018131,70019188	0.687500
spleen_male_adult_37_years	chr8	24387320	24387340	24387336	-	High_confidence	15	15	49	3.421870	4.833798	chr8	24386908	24387825	LTR|ERVK|HERVK22-int	-	chr8	24295890	24387324	AC120193.1|ENST00000523700.5	-	24295890,24300884,24387160	24296250,24300929,24387324	0.653061
spleen_male_adult_37_years	chr22	24011756	24011757	24011756	+	High_confidence	8	8	8	0.558673	2.750000	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
spleen_male_adult_37_years	chr19	9709659	9709660	9709659	+	High_confidence	13	13	16	1.117345	3.189898	chr19	9709309	9709779	LTR|ERV1|LTR10A	+	chr19	9709602	9721270	STRG.106768.1	+	9709602,9719542	9709992,9721270	0.937500
spleen_male_adult_37_years	chr11	108225440	108225441	108225440	+	High_confidence	22	22	22	1.536350	3.174674	chr11	108225380	108225464	LINE|CR1|L3	+	chr11	108224782	108231594	ATM|ENST00000638443.1	+	108224782,108227594,108227775,108229177,108231487	108224871,108227696,108227888,108230912,108231594	1.000000
spleen_male_adult_37_years	chr9	76609257	76609302	76609262	+	RAMPAGE_only	4	6	22	1.536350	3.546439	chr9	76609168	76609773	DNA|TcMar-Tigger|Tigger17a	+	chr9	76642137	76664767	STRG.65020.1	+	76642137,76642444,76644717,76649952,76664004	76642286,76642678,76644979,76650026,76664767	0.545455
spleen_male_adult_37_years	chr5	34244811	34244817	34244811	-	High_confidence	3	3	13	0.907843	2.792481	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34174419	34244796	STRG.35714.3	-	34174419,34175821,34179012,34182679,34218294,34239374,34244615	34175537,34175957,34179097,34182867,34218450,34239448,34244796	0.615385
spleen_male_adult_37_years	chr6	170126606	170126637	170126606	-	High_confidence	8	9	26	1.815686	3.783465	chr6	170126572	170126709	LTR|ERVL-MaLR|MLT1F	+	chr6	170107328	170126660	STRG.49275.1	-	170107328,170126282	170107460,170126660	0.961538
spleen_male_adult_37_years	chr8	47601279	47601285	47601279	+	RAMPAGE_only	4	5	12	0.838009	3.022055	chr8	47601256	47601388	SINE|MIR|MIRb	-	chr8	47654087	47735883	SPIDR|ENST00000519141.5	+	47654087,47673800,47700402,47701720,47701955,47712661,47713488,47727199,47728932,47729411,47735306	47654149,47673941,47700490,47701864,47702015,47712872,47713641,47727293,47729047,47729465,47735883	0.583333
spleen_male_adult_37_years	chr11	48044792	48044801	48044800	+	High_confidence	3	3	8	0.558673	2.521641	chr11	48044816	48044902	LINE|L2|L2b	+	chr11	48044803	48121147	PTPRJ|ENST00000526550.1	+	48044803,48046229,48110057,48112746,48121002	48044871,48046331,48110076,48112983,48121147	0.625000
spleen_male_adult_37_years	chr12	643627	643648	643627	-	High_confidence	27	52	131	9.148265	5.589868	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.580153
spleen_male_adult_37_years	chr16	4239733	4239749	4239748	-	High_confidence	14	14	37	2.583861	4.259149	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.837838
spleen_male_adult_37_years	chr12	53464815	53464842	53464841	+	RAMPAGE_only	3	5	12	0.838009	2.688722	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.833333
spleen_male_adult_37_years	chr4	48012914	48012945	48012944	-	High_confidence	11	11	27	1.885520	4.208410	chr4	48012591	48013262	LTR|ERV1|MER4-int	-	chr4	47935976	48012944	CNGA1|NM_000087.3	-	47935976,47940762,47942040,47943180,47943370,47949832,47951352,47952582,47981392,48010793,48012888	47937829,47940869,47942148,47943288,47943412,47949895,47951469,47952703,47981500,48010893,48012944	0.851852
spleen_male_adult_37_years	chr11	72824438	72824457	72824438	+	RAMPAGE_only	11	12	19	1.326848	3.326360	chr11	72824377	72824488	SINE|MIR|MIRc	-	chr11	72821887	72829633	ATG16L2|ENST00000536995.5	+	72821887,72822477,72825301,72826172,72826517,72828358,72828882,72829302	72822295,72824842,72825407,72826243,72827293,72828776,72828984,72829633	1.000000
spleen_male_adult_37_years	chr9	76608877	76608904	76608903	+	RAMPAGE_only	129	132	355	24.791100	5.340896	chr9	76608739	76609168	LTR|ERVL-MaLR|MLT1F2	+	chr9	76459229	76631660	STRG.65012.1	+	76459229,76500915,76502238,76515531,76516513,76527815,76564377,76565688,76605849,76609032,76609248,76631396	76459305,76501061,76503756,76515669,76516776,76527895,76564612,76565815,76605991,76609153,76609342,76631660	0.749296
spleen_male_adult_37_years	chr11	3100388	3100427	3100410	-	RAMPAGE_only	4	4	12	0.838009	3.251629	chr11	3100364	3100432	SINE|MIR|MIRc	+	chr11	3087378	3102266	OSBPL5|ENST00000534454.5	-	3087378,3088177,3089845,3090557,3092431,3092866,3093526,3093745,3094236,3100157,3101602,3102182	3087783,3088343,3089948,3090696,3092558,3093052,3093663,3093835,3094334,3100256,3101699,3102266	1.000000
spleen_male_adult_37_years	chr16	30097080	30097081	30097080	+	High_confidence	62	62	77	5.377225	5.171696	chr16	30096875	30097207	LTR|ERV1|LTR10B2	+	chr16	30096429	30104116	AC012645.1|ENST00000515455.2	+	30096429,30103456	30097419,30104116	0.922078
spleen_male_adult_37_years	chr1	183590841	183590842	183590841	-	High_confidence	7	8	8	0.558673	2.521641	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555562	183590876	NCF2|ENST00000367536.5	-	183555562,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590876	0.875000
spleen_male_adult_37_years	chr21	29121989	29121993	29121989	+	High_confidence	8	8	14	0.977677	2.638460	chr21	29121887	29122110	DNA|hAT-Charlie|Charlie29a	+	chr21	29122054	29175029	MAP3K7CL|ENST00000460883.5	+	29122054,29149188,29159940,29174711	29122213,29149250,29160056,29175029	0.857143
spleen_male_adult_37_years	chr15	80059918	80059933	80059918	+	High_confidence	57	63	138	9.637104	4.768638	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.985507
spleen_male_adult_37_years	chr6	13261100	13261104	13261103	+	RAMPAGE_only	7	7	14	0.977677	3.026987	chr6	13260907	13261111	DNA|hAT-Charlie|MER20	-	chr6	13272211	13286197	PHACTR1|ENST00000489548.1	+	13272211,13272859,13278267,13283421,13286145	13272468,13272915,13278329,13283562,13286197	0.714286
spleen_male_adult_37_years	chr16	4628562	4628581	4628562	+	RAMPAGE_only	6	6	14	0.977677	3.085055	chr16	4628548	4628844	SINE|Alu|AluSx	-	chr16	4624960	4688908	MGRN1|ENST00000588994.5	+	4624960,4650364,4651962,4652677,4657245,4664708,4665101,4668264,4671390,4673497,4677462,4681549,4682822,4683223,4683842,4688795	4625048,4650483,4652051,4652824,4657363,4664775,4665151,4668312,4671459,4673657,4677572,4681776,4682946,4683269,4683932,4688908	0.571429
spleen_male_adult_37_years	chr6	2881285	2881286	2881285	-	High_confidence	10	11	11	0.768175	2.921928	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.909091
spleen_male_adult_37_years	chr6	29793082	29793101	29793100	+	RAMPAGE_only	9	9	18	1.257014	2.705229	chr6	29793127	29793966	LTR|ERVL|ERV3-16A3_I-int	+	chr6	30489405	30494205	HLA-E|NM_005516.5	+	30489405,30489725,30490239,30491136,30491536,30492403,30492540,30492748	30489595,30489995,30490515,30491412,30491653,30492436,30492583,30494205	0.500000
spleen_male_adult_37_years	chr16	57892947	57892960	57892959	+	High_confidence	7	8	14	0.977677	3.521641	chr16	57892560	57893049	LINE|L2|L2a	+	chr16	57893178	57895488	STRG.98759.1	+	57893178	57895488	0.500000
spleen_male_adult_37_years	chr19	35164163	35164236	35164201	+	High_confidence	6	6	33	2.304525	3.752600	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	1.000000
spleen_male_adult_37_years	chr2	70019193	70019206	70019193	-	High_confidence	4	4	13	0.907843	3.022055	chr2	70018191	70020062	LINE|L1|L1MA8	+	chr2	69988740	70019188	PCBP1-AS1|ENST00000626769.2	-	69988740,69996685,70015447,70018014,70019137	69988838,69996888,70015580,70018131,70019188	0.615385
spleen_male_adult_37_years	chr14	23699470	23699476	23699470	+	High_confidence	243	267	442	30.866665	6.749366	chr14	23699385	23700234	LTR|ERV1|LTR1D1	-	chr14	23699466	23705242	STRG.88458.1	+	23699466,23701550,23701851,23703659	23699531,23701714,23701929,23705242	0.970588
spleen_male_adult_37_years	chr2	69798997	69799002	69798997	-	High_confidence	10	11	25	1.745852	4.334963	chr2	69798831	69799610	LTR|ERV1|LTR19C	-	chr2	69789479	69798997	STRG.14325.1	-	69789479,69790264,69794072,69798787	69789926,69790436,69794238,69798997	0.760000
spleen_male_adult_37_years	chr11	287295	287315	287314	+	High_confidence	11	13	32	2.234691	3.863609	chr11	287048	287379	LINE|L2|L2a	-	chr11	288037	288987	AC136475.3|ENST00000534742.1	+	288037,288949	288811,288987	1.000000
spleen_male_adult_37_years	chr7	43762655	43762670	43762664	+	High_confidence	57	58	233	16.271342	5.996722	chr7	43762606	43762916	SINE|Alu|AluSc	-	chr7	43762637	43803835	STRG.51466.3	+	43762637,43771137,43787903,43791248,43792714,43800464,43803675	43762774,43771170,43788025,43791368,43792812,43800572,43803835	0.931330
spleen_male_adult_37_years	chr4	141332616	141332617	141332616	-	High_confidence	183	185	198	13.827149	4.627518	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.959596
spleen_male_adult_37_years	chr5	154038387	154038409	154038408	-	High_confidence	7	8	14	0.977677	3.238901	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.785714
spleen_male_adult_37_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	32	32	32	2.234691	3.988609	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.843750
spleen_male_adult_37_years	chr2	143247289	143247353	143247289	+	RAMPAGE_only	40	40	74	5.167722	5.320610	chr2	143246994	143247508	LTR|ERVL|LTR32	+	chr2	143129329	143768352	ARHGAP15|NM_018460.3	+	143129329,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.554054
spleen_male_adult_37_years	chr19	55678426	55678462	55678461	+	RAMPAGE_only	4	4	15	1.047511	3.039149	chr19	55678409	55678486	LINE|L2|L2c	-	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.800000
spleen_male_adult_37_years	chr3	28291847	28291848	28291847	+	High_confidence	166	173	218	15.223830	5.499908	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.775229
spleen_male_adult_37_years	chr7	154928480	154928504	154928503	+	High_confidence	24	25	42	2.933032	4.802915	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.952381
spleen_male_adult_37_years	chr8	65979196	65979229	65979196	+	RAMPAGE_only	9	9	16	1.117345	3.577820	chr8	65979005	65979377	LTR|ERVL-MaLR|THE1B	+	chr8	66021555	66100520	DNAJC5B|NM_033105.4	+	66021555,66043487,66051530,66076659,66080376,66099936	66021705,66043611,66051666,66076873,66080548,66100520	0.625000
spleen_male_adult_37_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	11	11	15	1.047511	3.323231	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
spleen_male_adult_37_years	chr21	38229924	38229928	38229927	+	High_confidence	18	29	43	3.002866	4.766968	chr21	38229909	38234139	LINE|L1|L1MB8	-	chr21	38229914	38301826	KCNJ15|NM_001276439.1	+	38229914,38257045,38296925,38299243	38230023,38257185,38297023,38301826	0.581395
spleen_male_adult_37_years	chr12	31121301	31121303	31121302	-	RAMPAGE_only	6	11	11	0.768175	3.277613	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	1.000000
spleen_male_adult_37_years	chr4	38078772	38078808	38078772	+	RAMPAGE_only	29	31	74	5.167722	4.970733	chr4	38078433	38078801	LTR|ERVL-MaLR|MLT1A	+	chr4	38020676	38137743	TBC1D1|ENST00000510573.6	+	38020676,38021585,38027787,38035587,38044361,38045816,38049617,38053105,38054198,38089931,38095928,38102998,38115709,38118032,38124961,38133083,38137134	38020695,38021718,38027879,38035698,38044490,38045903,38049898,38053225,38054338,38090117,38096090,38103157,38115954,38118192,38125131,38133257,38137743	0.986486
spleen_male_adult_37_years	chr19	46350849	46350870	46350849	+	RAMPAGE_only	85	97	145	10.125942	5.090635	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.951724
spleen_male_adult_37_years	chr19	34860633	34860658	34860633	-	High_confidence	9	9	35	2.444193	4.272140	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849045	34860637	STRG.108217.1	-	34849045,34860173	34849549,34860637	0.542857
spleen_male_adult_37_years	chr13	31814727	31814737	31814727	-	High_confidence	3	3	10	0.698341	2.721928	chr13	31814066	31816716	LINE|L1|L1M4c	+	chr13	31797221	31814197	STRG.85869.1	-	31797221,31814109	31797492,31814197	0.500000
spleen_male_adult_37_years	chr19	13149325	13149330	13149325	-	High_confidence	3	3	11	0.768175	3.459432	chr19	13149129	13149441	SINE|Alu|AluSx1	+	chr19	13144270	13149839	STX10|ENST00000593126.5	-	13144270,13144576,13144763,13145287,13149028,13149498,13149727	13144403,13144671,13144870,13145395,13149091,13149593,13149839	0.636364
spleen_male_adult_37_years	chr1	26306938	26306959	26306958	-	High_confidence	3	3	8	0.558673	2.500000	chr1	26306920	26307081	SINE|MIR|MIRb	+	chr1	26282281	26306704	UBXN11|NM_183008.2	-	26282281,26282648,26282863,26284141,26284361,26285463,26285822,26294204,26296918,26297426,26297961,26300925,26301693,26302812,26303042,26306591	26282569,26282789,26282937,26284245,26284482,26285541,26286037,26294331,26296995,26297481,26298062,26301024,26301722,26302918,26303167,26306704	0.750000
spleen_male_adult_37_years	chr7	26194624	26194625	26194624	-	RAMPAGE_only	9	9	9	0.628507	2.947703	chr7	26194416	26194704	SINE|Alu|AluJo	+	chr7	26191848	26200746	STRG.50547.8	-	26191848,26193250,26193574,26196400,26196556,26196806,26197314,26197621,26197830	26192577,26193373,26195909,26196481,26196658,26197017,26197461,26197732,26200746	1.000000
spleen_male_adult_37_years	chr4	152412488	152412529	152412528	-	High_confidence	12	12	28	1.955354	3.851823	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
spleen_male_adult_37_years	chr8	87044431	87044472	87044465	+	High_confidence	16	16	64	4.469381	4.961817	chr8	87044391	87044993	LTR|ERV1|MER61F	-	chr8	87044491	87428579	STRG.59953.1	+	87044491,87205992,87236918,87284677,87286538,87351684,87353635,87428545	87044665,87206138,87237112,87284815,87286671,87351794,87353786,87428579	0.890625
spleen_male_adult_37_years	chr11	121448852	121448885	121448852	+	RAMPAGE_only	7	7	18	1.257014	3.281036	chr11	121448674	121449006	LINE|L2|L2b	-	chr11	121452202	121633762	SORL1|NM_003105.5	+	121452202,121470006,121478117,121488031,121490042,121496868,121513002,121514151,121520656,121522585,121522915,121532463,121543547,121545242,121549959,121550584,121553936,121555186,121557313,121558590,121559518,121566939,121570156,121574240,121577280,121583457,121586221,121588019,121589258,121590039,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121452616,121470123,121478243,121488193,121490110,121497049,121513104,121514321,121520849,121522703,121522989,121532552,121543726,121545429,121550088,121550670,121554109,121555318,121557405,121558837,121559657,121567113,121570270,121574363,121577400,121583583,121586329,121588151,121589390,121590174,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121633762	0.555556
spleen_male_adult_37_years	chr17	7313765	7313776	7313765	-	High_confidence	2	3	7	0.488839	2.521641	chr17	7313740	7313844	LINE|L2|L2c	+	chr17	7312658	7313757	GPS2|ENST00000573807.5	-	7312658,7313028,7313211	7312839,7313124,7313757	1.000000
spleen_male_adult_37_years	chr17	77127959	77127975	77127964	+	High_confidence	6	10	24	1.676018	4.053509	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.750000
spleen_male_adult_37_years	chr6	109325708	109325753	109325708	+	RAMPAGE_only	5	5	19	1.326848	3.572431	chr6	109324446	109326053	LINE|L2|L2a	-	chr6	109329096	109343174	STRG.46571.1	+	109329096,109336367,109337395,109338447,109340901,109341298,109342398	109329112,109336517,109337449,109338615,109341054,109341433,109343174	0.684211
spleen_male_adult_37_years	chr16	15740077	15740108	15740077	-	RAMPAGE_only	9	9	19	1.326848	3.725481	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.947368
spleen_male_adult_37_years	chr19	17197828	17197857	17197828	+	High_confidence	5	5	14	0.977677	3.128085	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	1.000000
spleen_male_adult_37_years	chr4	152100757	152100790	152100757	+	High_confidence	2	2	10	0.698341	2.947703	chr4	152100450	152100876	LTR|ERVL|LTR16	-	chr4	152100817	152104720	LOC100996286|NR_121627.1	+	152100817,152101483,152103626	152101218,152101580,152104720	0.700000
spleen_male_adult_37_years	chr4	75980777	75980813	75980783	+	RAMPAGE_only	91	97	303	21.159728	6.707772	chr4	75980506	75980925	LTR|ERVL|LTR16A1	-	chr4	76011179	76112802	ART3|NM_001130017.2	+	76011179,76075880,76081823,76097643,76098954,76100290,76100794,76100989,76103936,76112385	76011320,76075958,76082535,76097676,76098987,76100320,76100824,76101019,76103969,76112802	0.544554
spleen_male_adult_37_years	chr11	18706991	18707010	18706991	-	RAMPAGE_only	13	13	33	2.304525	3.963711	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18704304	18726180	IGSF22|ENST00000513874.5	-	18704304,18705816,18706913,18707803,18708206,18709386,18710326,18710654,18712081,18713851,18714276,18714499,18715431,18716727,18717930,18718614,18719715,18720063,18720185,18721534,18721909,18724127,18726073	18704538,18706146,18707213,18707996,18708295,18709683,18710455,18710828,18712384,18714148,18714418,18714624,18715716,18717000,18718093,18718728,18719893,18720103,18720285,18721671,18722041,18724269,18726180	0.545455
spleen_male_adult_37_years	chr7	66292496	66292507	66292496	+	RAMPAGE_only	5	5	11	0.768175	2.550341	chr7	66286853	66292884	LINE|L1|L1HS	-	chr7	66996804	67239520	TYW1|NM_018264.3	+	66996804,66998064,66998816,67009582,67014366,67017852,67024899,67049948,67055834,67067284,67083429,67098540,67117482,67183125,67195169,67238307	66996982,66998195,66998954,67009684,67014561,67018143,67025022,67050066,67055887,67067403,67083539,67098718,67117618,67183236,67195337,67239520	0.909091
spleen_male_adult_37_years	chr11	2972318	2972355	2972354	-	RAMPAGE_only	4	4	12	0.838009	2.751629	chr11	2972339	2972686	LINE|L1|L1M5	+	chr11	2971449	2989268	NAP1L4|ENST00000530064.5	-	2971449,2972101,2976023,2978283,2979206,2983745,2989128	2971534,2972243,2976123,2978342,2979237,2983813,2989268	0.833333
spleen_male_adult_37_years	chr13	46156456	46156539	46156456	-	RAMPAGE_only	5	5	48	3.352036	5.069236	chr13	46156240	46156407	DNA|TcMar-Tigger|Tigger19a	-	chr13	46146905	46153265	LCP1|ENST00000469227.5	-	46146905,46148351,46150935,46152779,46153138	46147103,46148447,46151078,46152945,46153265	0.833333
spleen_male_adult_37_years	chr19	18938355	18938395	18938355	-	High_confidence	9	9	22	1.536350	3.879664	chr19	18938201	18938361	SINE|MIR|MIR3	-	chr19	18929438	18938982	HOMER3|ENST00000594439.5	-	18929438,18931324,18931508,18931975,18932923,18938352,18938727,18938968	18929634,18931411,18931625,18932132,18933045,18938484,18938884,18938982	0.954545
spleen_male_adult_37_years	chr10	61466025	61466059	61466058	+	RAMPAGE_only	5	5	31	2.164857	4.131300	chr10	61465834	61466229	LTR|ERVL-MaLR|MLT1B	+	chr10	61452638	61493433	TMEM26-AS1|NR_120643.1	+	61452638,61467497,61481839,61482789,61483831,61493295	61453289,61467592,61481950,61482825,61484045,61493433	0.516129
spleen_male_adult_37_years	chr5	151687244	151687252	151687250	-	High_confidence	4	8	16	1.117345	2.872906	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.937500
spleen_male_adult_37_years	chr12	109053951	109053972	109053956	-	High_confidence	17	23	64	4.469381	4.738564	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.718750
spleen_male_adult_37_years	chr5	42837670	42837679	42837678	-	RAMPAGE_only	6	6	12	0.838009	3.022055	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	1.000000
spleen_male_adult_37_years	chr12	108635848	108635849	108635848	+	High_confidence	216	217	228	15.922171	6.458305	chr12	108635755	108635962	SINE|MIR|MIRb	-	chr12	108635857	108636530	STRG.84164.1	+	108635857,108636394	108636237,108636530	0.732456
spleen_male_adult_37_years	chr9	39810033	39810099	39810033	-	High_confidence	19	19	67	4.678884	5.006071	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.611940
spleen_male_adult_37_years	chr14	23636366	23636367	23636366	+	High_confidence	72	72	81	5.656561	4.934830	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	0.950617
spleen_male_adult_37_years	chr7	87040212	87040223	87040222	-	High_confidence	8	8	30	2.095023	4.706891	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86911824	87040226	STRG.52947.4	-	86911824,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040226	0.966667
spleen_male_adult_37_years	chr4	41048731	41048797	41048796	+	High_confidence	19	26	110	7.681749	5.171100	chr4	41048638	41050114	Retroposon|SVA|SVA_C	+	chr4	41048728	41050344	STRG.30841.1	+	41048728	41050344	0.927273
spleen_male_adult_37_years	chr12	8681676	8681677	8681676	+	High_confidence	18	18	20	1.396682	3.484184	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.950000
spleen_male_adult_37_years	chr7	85106805	85106808	85106805	-	High_confidence	219	221	348	24.302261	6.465079	chr7	85106637	85107002	LTR|ERVL-MaLR|THE1D	-	chr7	84995552	85107506	STRG.52950.3	-	84995552,85006801,85012781,85015058,85018251,85020232,85022390,85036888,85040672,85042170,85055716,85065423,85068190,85072961,85081516,85097804,85106720	84999865,85006941,85012846,85015216,85018293,85020321,85022613,85037033,85040742,85042285,85055859,85065552,85068284,85073081,85081579,85097965,85107506	0.887931
spleen_male_adult_37_years	chr15	88635654	88635666	88635654	+	High_confidence	219	224	664	46.369832	6.661525	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.774096
spleen_male_adult_37_years	chr9	129489101	129489126	129489125	+	High_confidence	3	3	10	0.698341	2.725481	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.900000
spleen_male_adult_37_years	chr16	29963560	29963561	29963560	+	High_confidence	11	12	12	0.838009	3.095795	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.500000
spleen_male_adult_37_years	chr6	36757385	36757400	36757399	-	High_confidence	21	22	63	4.399547	5.157679	chr6	36757386	36757542	SINE|MIR|MIRc	-	chr6	36740777	36757409	CPNE5|ENST00000393189.2	-	36740777,36743688,36744267,36745047,36745387,36746395,36748220,36753033,36756244,36757284	36742486,36743762,36744325,36745150,36745515,36746577,36748267,36753095,36756298,36757409	0.841270
spleen_male_adult_37_years	chr4	68576386	68576402	68576401	-	High_confidence	7	8	19	1.326848	3.149673	chr4	68576215	68576696	LTR|ERV1|LTR2B	-	chr4	68575792	68576364	STRG.31364.2	-	68575792	68576364	0.894737
spleen_male_adult_37_years	chr6	41732665	41732693	41732692	-	RAMPAGE_only	9	9	25	1.745852	4.053509	chr6	41732628	41732733	SINE|MIR|MIR	-	chr6	41686528	41733853	TFEB|ENST00000394283.5	-	41686528,41687752,41687907,41689730,41690662,41691000,41732648	41687169,41687809,41688028,41689811,41690917,41691235,41733853	0.840000
spleen_male_adult_37_years	chr12	7502477	7502544	7502543	-	High_confidence	10	10	52	3.631372	4.954206	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.980769
spleen_male_adult_37_years	chr4	128570290	128570310	128570290	-	High_confidence	2	2	7	0.488839	2.521641	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	1.000000
spleen_male_adult_37_years	chr19	41545191	41545192	41545191	+	RAMPAGE_only	699	707	712	49.721868	7.384468	chr19	41544577	41545607	LTR|ERVK|LTR5A	+	chr19	41549519	41565970	STRG.108904.3	+	41549519,41564681,41565567	41556085,41565056,41565970	0.983146
spleen_male_adult_37_years	chr1	60825662	60825686	60825662	-	High_confidence	16	16	27	1.885520	4.282484	chr1	60825624	60825834	SINE|MIR|MIRb	-	chr1	60659630	60825584	AC099792.1|ENST00000423403.1	-	60659630,60662984,60729574,60732446,60733463,60825335	60661470,60663025,60729667,60732508,60733522,60825584	0.629630
spleen_male_adult_37_years	chr2	28620070	28620074	28620070	+	High_confidence	11	11	20	1.396682	3.546439	chr2	28619941	28620136	LINE|L2|L2a	-	chr2	28620671	28630664	PLB1|ENST00000473272.1	+	28620671,28625056,28626427,28628562,28629093,28630585	28620978,28625108,28626508,28628628,28629185,28630664	0.550000
spleen_male_adult_37_years	chr2	73072208	73072223	73072208	-	RAMPAGE_only	3	3	11	0.768175	2.921928	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73112783	STRG.14448.1	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603,73075992,73088049,73088878,73112346	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73075724,73076182,73088749,73089315,73112783	0.818182
spleen_male_adult_37_years	chr1	36476059	36476236	36476059	-	High_confidence	28	28	130	9.078431	5.574721	chr1	36475856	36476048	DNA|hAT-Blackjack|MER63A	-	chr1	36466043	36476327	CSF3R|ENST00000480825.6	-	36466043,36467557,36467821,36469651,36471432,36472237,36472516,36473718,36475376	36467311,36467651,36469257,36469840,36472139,36472391,36473622,36473887,36476327	1.000000
spleen_male_adult_37_years	chr12	95749177	95749178	95749177	+	High_confidence	53	53	59	4.120211	4.080884	chr12	95748861	95749284	LTR|ERV1|LTR7Y	+	chr12	95749185	95749663	STRG.83694.1	+	95749185	95749663	0.915254
spleen_male_adult_37_years	chr2	117804251	117804279	117804278	-	High_confidence	6	6	15	1.047511	2.842371	chr2	117803780	117809809	LINE|L1|L1PA3	+	chr2	117757562	117804174	AC009312.1|ENST00000457110.1	-	117757562,117760372,117785529,117804131	117757774,117760591,117785647,117804174	0.800000
spleen_male_adult_37_years	chr14	102370760	102370793	102370760	+	High_confidence	37	43	117	8.170588	5.694733	chr14	102370462	102370850	LINE|L2|L2b	-	chr14	102369876	102425272	STRG.92247.4	+	102369876,102376649,102407337,102408487,102414635,102424978	102370962,102376940,102407466,102408619,102414793,102425272	0.888889
spleen_male_adult_37_years	chr16	31357667	31357696	31357695	+	RAMPAGE_only	3	3	7	0.488839	2.521641	chr16	31357562	31357712	SINE|MIR|MIRb	+	chr16	31355173	31358455	ITGAX|ENST00000562918.5	+	31355173,31355892,31356624,31357030,31357333	31355291,31355998,31356728,31357101,31358455	0.571429
spleen_male_adult_37_years	chr10	95697656	95697695	95697671	+	High_confidence	17	19	96	6.704072	5.499774	chr10	95697436	95697843	LTR|ERVL-MaLR|MSTC	+	chr10	95697707	95698705	STRG.71292.1	+	95697707	95698705	0.739583
spleen_male_adult_37_years	chr1	100268205	100268281	100268280	+	RAMPAGE_only	9	12	46	3.212368	3.794239	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.956522
spleen_male_adult_37_years	chr16	70590319	70590335	70590328	+	RAMPAGE_only	44	45	159	11.103619	5.337310	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.874214
spleen_male_adult_37_years	chr17	59729702	59729734	59729704	+	High_confidence	38	72	232	16.201508	5.635759	chr17	59729673	59729983	SINE|Alu|AluSq2	-	chr17	59729714	59737517	VMP1|ENST00000587259.5	+	59729714,59731420,59735337,59737452	59730017,59731522,59735473,59737517	0.978448
spleen_male_adult_37_years	chr21	29077460	29077501	29077486	+	High_confidence	16	16	39	2.723529	4.087568	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.666667
spleen_male_adult_37_years	chr22	18149868	18149869	18149868	+	High_confidence	5	5	8	0.558673	2.500000	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
spleen_male_adult_37_years	chr15	57300338	57300344	57300338	+	High_confidence	97	98	241	16.830014	5.972942	chr15	57300291	57300572	SINE|Alu|AluSg	-	chr15	57300364	57307761	STRG.94148.1	+	57300364,57302901,57303099,57307541	57300924,57303013,57307068,57307761	0.966805
spleen_male_adult_37_years	chr20	3795750	3795789	3795788	+	High_confidence	23	24	161	11.243288	6.021601	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.975155
spleen_male_adult_37_years	chr5	34244736	34244779	34244736	-	High_confidence	3	3	18	1.257014	3.454822	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34174419	34244796	STRG.35714.3	-	34174419,34175821,34179012,34182679,34218294,34239374,34244615	34175537,34175957,34179097,34182867,34218450,34239448,34244796	0.777778
spleen_male_adult_37_years	chr2	102419795	102419796	102419795	+	High_confidence	23	26	27	1.885520	3.189508	chr2	102419712	102419900	SINE|MIR|MIRb	+	chr2	102419685	102452384	IL18RAP|ENST00000409369.1	+	102419685,102423177,102424230,102437211,102441311,102443199,102445188,102447069,102450847,102451765	102419797,102423347,102424414,102437362,102441377,102443323,102445340,102447207,102451021,102452384	0.925926
spleen_male_adult_37_years	chr5	100905423	100905439	100905438	+	RAMPAGE_only	3	3	8	0.558673	2.750000	chr5	100905118	100905569	LINE|L2|L2c	-	chr5	100939454	100942345	STRG.38585.1	+	100939454	100942345	0.750000
spleen_male_adult_37_years	chr16	31118733	31118782	31118781	+	RAMPAGE_only	11	11	31	2.164857	4.415061	chr16	31118415	31118797	LINE|L2|L2c	+	chr16	31117663	31131393	KAT8|NM_182958.2	+	31117663,31120185,31120338,31127034,31127188,31128049,31130016,31130266,31130455,31130745	31117892,31120260,31120514,31127088,31127353,31128139,31130157,31130360,31130606,31131393	0.806452
spleen_male_adult_37_years	chr19	19668150	19668170	19668169	+	High_confidence	3	3	9	0.628507	2.500000	chr19	19668164	19668579	LTR|ERV1|LTR21B	-	chr19	19668152	19683506	ZNF101|NM_001300949.1	+	19668152,19677863,19678725,19679180	19668207,19677986,19678786,19683506	0.888889
spleen_male_adult_37_years	chr19	3062919	3062983	3062922	-	High_confidence	16	19	80	5.586727	4.940849	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.950000
spleen_male_adult_37_years	chr11	78532946	78532951	78532950	+	High_confidence	6	7	11	0.768175	3.277613	chr11	78532498	78533068	LTR|ERV1|LTR24C	+	chr11	78533175	78558565	AP003110.1|ENST00000526976.1	+	78533175,78546508,78555214,78558263	78533303,78546640,78555369,78558565	0.545455
spleen_male_adult_37_years	chr18	47920091	47920115	47920114	-	RAMPAGE_only	3	3	9	0.628507	2.503258	chr18	47919993	47920302	LTR|ERVL-MaLR|MLT1A0	-	chr18	47808956	47930559	SMAD2|ENST00000262160.10	-	47808956,47845339,47845662,47848474,47851273,47865058,47868322,47869242,47870474,47896520,47930360	47841950,47845484,47845800,47848687,47851327,47865133,47868457,47869436,47870564,47896809,47930559	0.666667
spleen_male_adult_37_years	chr6	119491270	119491311	119491301	-	High_confidence	72	75	305	21.299396	6.667819	chr6	119489191	119492975	LINE|L1|L1PB1	+	chr6	119473247	119491358	STRG.47002.5	-	119473247	119491358	0.918033
spleen_male_adult_37_years	chr10	35449689	35449735	35449714	+	RAMPAGE_only	98	100	453	31.634840	6.527332	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.931567
spleen_male_adult_37_years	chr16	19487898	19487901	19487900	-	High_confidence	10	17	18	1.257014	3.101881	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.611111
spleen_male_adult_37_years	chr12	55930641	55930642	55930641	+	High_confidence	18	18	18	1.257014	4.058814	chr12	55930357	55930665	SINE|Alu|AluSc8	-	chr12	55930427	55936567	DGKA|ENST00000547015.5	+	55930427,55931163,55936422	55930643,55931344,55936567	0.500000
spleen_male_adult_37_years	chr14	101731413	101731414	101731413	+	High_confidence	50	50	68	4.748718	4.991848	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101731402	101732076	STRG.92228.1	+	101731402,101731787	101731468,101732076	0.514706
spleen_male_adult_37_years	chr10	4678115	4678170	4678146	-	High_confidence	43	43	121	8.449924	3.805562	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.859504
spleen_male_adult_37_years	chr17	64378873	64378881	64378873	-	High_confidence	4	5	11	0.768175	2.921928	chr17	64378696	64378922	SINE|MIR|MIRb	+	chr17	64375187	64378867	PECAM1|ENST00000566616.1	-	64375187,64377823,64378797	64375356,64378117,64378867	0.818182
spleen_male_adult_37_years	chr2	37599897	37599900	37599897	+	High_confidence	38	38	58	4.050377	3.377013	chr2	37594197	37600327	LINE|L1|L1PA6	-	chr2	37599896	37600912	STRG.12614.1	+	37599896	37600912	0.982759
spleen_male_adult_37_years	chr14	81170372	81170413	81170378	-	High_confidence	5	5	32	2.234691	3.991729	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.781250
spleen_male_adult_37_years	chr16	30445873	30445877	30445873	-	High_confidence	27	39	60	4.190045	4.955144	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.966667
spleen_male_adult_37_years	chr13	47705308	47705334	47705327	-	High_confidence	16	16	59	4.120211	4.818935	chr13	47704852	47705335	LTR|ERVL-MaLR|MLT1D	-	chr13	47704854	47705285	STRG.86391.1	-	47704854	47705285	0.762712
spleen_male_adult_37_years	chr11	73269969	73270091	73270090	+	High_confidence	32	32	156	10.894117	5.645930	chr11	73270078	73270271	SINE|MIR|MIRc	-	chr11	73269893	73297805	P2RY6|ENST00000393591.5	+	73269893,73272306,73295729,73296484	73270155,73272466,73295815,73297805	0.891026
spleen_male_adult_37_years	chr19	9140390	9140422	9140393	+	High_confidence	83	83	292	20.391553	5.988756	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	STRG.106819.3	+	9140396,9155924,9156611,9157979,9158825,9160113	9140592,9156041,9157394,9158075,9158908,9163408	0.893836
spleen_male_adult_37_years	chr4	125676815	125676832	125676831	+	High_confidence	6	8	13	0.907843	2.719295	chr4	125676065	125676887	LTR|ERV1|LTR1A1	+	chr4	125676717	125752793	AC105919.1|ENST00000507203.1	+	125676717,125752598	125676915,125752793	0.769231
spleen_male_adult_37_years	chr8	39017063	39017097	39017077	+	High_confidence	19	19	46	3.212368	4.411204	chr8	39016988	39017120	SINE|MIR|MIRb	-	chr8	39017035	39021713	ADAM9|ENST00000481058.1	+	39017035,39018852,39021642	39017414,39018918,39021713	0.695652
spleen_male_adult_37_years	chr5	14572932	14572972	14572964	-	High_confidence	160	174	306	21.369230	5.909900	chr5	14572729	14573102	LTR|ERVL-MaLR|MLT1A0	-	chr5	14569519	14572953	STRG.35308.1	-	14569519	14572953	0.833333
spleen_male_adult_37_years	chr9	124505476	124505526	124505525	-	High_confidence	13	15	54	3.771041	4.255485	chr9	124505450	124505579	SINE|MIR|MIRb	+	chr9	124500426	124504797	STRG.67269.7	-	124500426,124503078,124503293,124504681	124500715,124503220,124503410,124504797	0.851852
spleen_male_adult_37_years	chr1	207069255	207069266	207069255	+	High_confidence	3	3	7	0.488839	2.521641	chr1	207069286	207069328	SINE|MIR|MIRb	+	chr1	207069423	207077823	STRG.9187.5	+	207069423,207070279,207071508,207072203	207069528,207071250,207071573,207077823	0.571429
spleen_male_adult_37_years	chr1	14946118	14946153	14946139	+	High_confidence	5	5	18	1.257014	3.281036	chr1	14945935	14946157	SINE|MIR|MIR	-	chr1	14945918	15068155	KAZN|NM_001017999.2	+	14945918,14960683,15034748,15043988,15056090,15060171,15063571,15065629	14946173,14960875,15034885,15044159,15056280,15060302,15063622,15068155	0.722222
spleen_male_adult_37_years	chr13	31814686	31814697	31814686	-	High_confidence	11	12	18	1.257014	3.392147	chr13	31814066	31816716	LINE|L1|L1M4c	+	chr13	31797221	31814197	STRG.85869.1	-	31797221,31814109	31797492,31814197	0.611111
spleen_male_adult_37_years	chr5	177310952	177310971	177310970	-	High_confidence	4	4	11	0.768175	2.913977	chr5	177310885	177311074	LINE|L2|L2c	-	chr5	177301460	177311870	MXD3|ENST00000503473.5	-	177301460,177301924,177302127,177302396,177302576,177302751,177303008,177303171,177307780,177310425,177311760	177301807,177301987,177302178,177302496,177302644,177302830,177303077,177303320,177307964,177311484,177311870	1.000000
spleen_male_adult_37_years	chr3	129230529	129230543	129230542	+	High_confidence	7	7	12	0.838009	3.418296	chr3	129230456	129231665	DNA|TcMar-Tigger|Tigger3b	-	chr3	129230562	129247892	STRG.26730.1	+	129230562,129233223,129235656,129247817	129230870,129233489,129235761,129247892	0.916667
spleen_male_adult_37_years	chr2	113184979	113184991	113184979	+	High_confidence	7	8	22	1.536350	3.477175	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.772727
spleen_male_adult_37_years	chrX	5726116	5726148	5726128	-	High_confidence	9	9	27	1.885520	3.940073	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719300	5726309	STRG.116951.1	-	5719300,5725929	5719872,5726309	0.629630
spleen_male_adult_37_years	chr13	74231426	74231456	74231455	+	High_confidence	11	16	52	3.631372	5.207947	chr13	74231443	74231557	SINE|MIR|MIRc	-	chr13	74231456	74259976	LINC00402|ENST00000419499.1	+	74231456,74256932	74231752,74259976	0.653846
spleen_male_adult_37_years	chr3	50312891	50312934	50312933	-	High_confidence	54	55	236	16.480844	5.249040	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50300481	50312988	STRG.23571.1	-	50300481,50300987,50302056,50303465,50303787,50309658,50312263	50300800,50301077,50302980,50303563,50303953,50309777,50312988	0.978814
spleen_male_adult_37_years	chr16	69838753	69838808	69838769	+	High_confidence	6	6	28	1.955354	3.967720	chr16	69838688	69838832	LINE|CR1|X7A_LINE	+	chr16	69838736	69941741	WWP2|NM_001270453.1	+	69838736,69840125,69842023,69871803,69888038,69908760,69917708,69925429,69929447,69930129,69931151,69931508,69931801,69933969,69935852,69936311,69937117,69937547,69939026,69939340,69939840	69838889,69840263,69842120,69871931,69888249,69908850,69917883,69925484,69929529,69930258,69931227,69931580,69931890,69934129,69935986,69936452,69937238,69937652,69939123,69939413,69941741	0.964286
spleen_male_adult_37_years	chrX	71198180	71198196	71198195	-	High_confidence	13	14	35	2.444193	4.337175	chrX	71198068	71198187	SINE|MIR|MIR3	-	chrX	71183558	71198175	AL590764.1|ENST00000450860.1	-	71183558,71197908	71184017,71198175	0.600000
spleen_male_adult_37_years	chr2	218287266	218287306	218287266	-	High_confidence	5	5	27	1.885520	3.383793	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.962963
spleen_male_adult_37_years	chr10	89889028	89889048	89889028	+	High_confidence	10	10	16	1.117345	3.250000	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89888956	89914903	STRG.71033.1	+	89888956,89914635	89889149,89914903	0.812500
spleen_male_adult_37_years	chr6	33301040	33301041	33301040	-	RAMPAGE_only	14	14	21	1.466516	2.639354	chr6	33300983	33301112	DNA|hAT-Charlie|Charlie1	+	chr6	33299693	33314387	TAPBP|ENST00000434618.6	-	33299693,33303954,33304127,33304296,33304988,33313216,33313693,33314004	33301771,33303989,33304217,33304638,33305387,33313477,33313864,33314387	0.904762
spleen_male_adult_37_years	chr9	134373102	134373132	134373102	+	RAMPAGE_only	36	42	135	9.427601	5.651761	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134371970	134440585	RXRA|ENST00000356384.4	+	134371970,134374006,134401395,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134372139,134374130,134401540,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440585	0.866667
spleen_male_adult_37_years	chr11	72135683	72135740	72135724	+	High_confidence	57	64	267	18.645701	6.004177	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	0.917603
spleen_male_adult_37_years	chr8	16186271	16186314	16186271	-	High_confidence	10	12	23	1.606184	3.675311	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	1.000000
spleen_male_adult_37_years	chr3	127736002	127736003	127736002	-	High_confidence	17	17	20	1.396682	3.616349	chr3	127735830	127736012	LINE|CR1|L3b	-	chr3	127692116	127736357	MGLL|ENST00000398101.7	-	127692116,127694974,127710575,127721052,127722429,127735704	127692323,127695190,127710665,127721163,127722566,127736357	0.850000
spleen_male_adult_37_years	chr2	196176330	196176332	196176331	-	High_confidence	57	83	97	6.773906	5.497326	chr2	196176299	196176378	LINE|RTE-BovB|MamRTE1	-	chr2	196156571	196176327	STK17B|ENST00000420683.1	-	196156571,196163261,196174248,196176225	196156651,196163427,196174407,196176327	0.824742
spleen_male_adult_37_years	chr6	31053448	31053449	31053448	+	High_confidence	9	9	14	0.977677	3.235926	chr6	31053266	31053607	LTR|ERVL-MaLR|THE1A	+	chr6	31053449	31059890	HCG22|NR_003948.2	+	31053449,31054099,31055709,31059407	31053531,31054516,31056910,31059890	0.928571
spleen_male_adult_37_years	chr1	33021398	33021410	33021403	-	RAMPAGE_only	6	6	15	1.047511	2.549255	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	1.000000
spleen_male_adult_37_years	chr14	81427409	81427467	81427461	-	High_confidence	10	10	73	5.097888	4.534446	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.945205
spleen_male_adult_37_years	chr19	54617322	54617348	54617347	+	High_confidence	21	30	43	3.002866	4.707677	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.953488
spleen_male_adult_37_years	chr1	222737198	222737247	222737215	+	High_confidence	39	57	144	10.056108	5.993176	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737215	222750805	FAM177B|ENST00000391880.6	+	222737215,222737877,222746530,222747014,222748960,222749920	222737322,222738021,222746719,222747081,222749562,222750805	0.736111
spleen_male_adult_37_years	chr11	46375544	46375585	46375584	+	High_confidence	6	6	23	1.606184	3.186393	chr11	46375632	46375749	SINE|MIR|MIRb	+	chr11	46375023	46377350	DGKZ|ENST00000529698.1	+	46375023,46375431,46375850,46376065,46376327,46376523,46377072	46375045,46375631,46375951,46376145,46376397,46376564,46377350	0.913043
spleen_male_adult_37_years	chr11	102832769	102832782	102832781	+	RAMPAGE_only	4	4	8	0.558673	2.750000	chr11	102832592	102832982	DNA|TcMar-Tigger|MER6A	+	chr11	103048271	103048798	STRG.76908.1	+	103048271	103048798	0.500000
spleen_male_adult_37_years	chr1	26831997	26832023	26832019	+	High_confidence	20	20	45	3.142534	5.152391	chr1	26831803	26832078	LINE|L2|L2b	+	chr1	26832019	26857601	STRG.1270.5	+	26832019,26832446,26848607,26850300,26850557,26852752	26832072,26832607,26848757,26850438,26851231,26857601	0.622222
spleen_male_adult_37_years	chr13	30376953	30376965	30376964	-	High_confidence	33	34	98	6.843740	5.169467	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30374002	30376964	LINC00426|ENST00000416261.1	-	30374002,30375466,30376826	30374093,30375776,30376964	0.683673
spleen_male_adult_37_years	chr5	119420337	119420373	119420337	+	RAMPAGE_only	4	5	21	1.466516	3.880180	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.619048
spleen_male_adult_37_years	chr4	38744114	38744139	38744114	+	High_confidence	51	56	157	10.963951	5.946814	chr4	38743635	38744259	LINE|L1|HAL1	+	chr4	38744118	38753775	STRG.30707.1	+	38744118,38745340,38746789,38748299,38750593,38751431	38744267,38745461,38746876,38748790,38750739,38753775	0.789809
spleen_male_adult_37_years	chr12	10291721	10291740	10291721	-	High_confidence	5	5	12	0.838009	2.663533	chr12	10291619	10292089	LINE|L1|L1PA8	-	chr12	10290872	10291334	STRG.79066.1	-	10290872	10291334	0.750000
spleen_male_adult_37_years	chr10	17216276	17216311	17216310	-	RAMPAGE_only	6	6	16	1.117345	2.682589	chr10	17216274	17216354	LTR|ERV1|HERVIP10FH-int	+	chr10	17214238	17226898	VIM-AS1|ENST00000437232.5	-	17214238,17216166,17217601,17226855	17215364,17216274,17217675,17226898	0.812500
spleen_male_adult_37_years	chr12	10306141	10306150	10306149	+	RAMPAGE_only	4	4	10	0.698341	3.169925	chr12	10305880	10306192	SINE|Alu|AluY	+	chr12	10307817	10317251	KLRD1|NM_002262.3	+	10307817,10309387,10309625,10311463,10313409,10314672	10308084,10309480,10309688,10311615,10313513,10317251	0.700000
spleen_male_adult_37_years	chr2	191682575	191682576	191682575	+	RAMPAGE_only	11	11	13	0.907843	3.022055	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191686157	STRG.19009.10	+	191678989,191681945,191684229,191685598	191679128,191683804,191684296,191686157	0.923077
spleen_male_adult_37_years	chr1	235865100	235865152	235865151	-	RAMPAGE_only	3	4	24	1.676018	3.740602	chr1	235864944	235865509	LINE|L2|L2a	+	chr1	235829408	235866876	LYST|ENST00000468626.2	-	235829408,235833577,235866842	235830424,235833667,235866876	0.875000
spleen_male_adult_37_years	chr20	48679342	48679391	48679342	-	RAMPAGE_only	3	3	16	1.117345	3.202820	chr20	48679185	48679349	SINE|MIR|MIR	-	chr20	48624251	48827883	PREX1|ENST00000371941.3	-	48624251,48627547,48627860,48629448,48630727,48632276,48632495,48634675,48636462,48637710,48639765,48642167,48642406,48644408,48645850,48649299,48649995,48650893,48651395,48652585,48653360,48655289,48657039,48658135,48659918,48666282,48676192,48679359,48679650,48681234,48688656,48690946,48692671,48700752,48708259,48726289,48734545,48745024,48747808,48827641	48625927,48627615,48627963,48629621,48630794,48632391,48632639,48634775,48636683,48637752,48639894,48642258,48642489,48644497,48646057,48649576,48650206,48651055,48651583,48652706,48653497,48655375,48657188,48658228,48660061,48666355,48676268,48679409,48679754,48681335,48688804,48691096,48692790,48700886,48708421,48726391,48734650,48745147,48747880,48827883	0.687500
spleen_male_adult_37_years	chr21	33931201	33931235	33931224	+	High_confidence	11	11	30	2.095023	3.780395	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.733333
spleen_male_adult_37_years	chr1	6208681	6208682	6208681	-	High_confidence	51	51	51	3.561538	3.595405	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.921569
spleen_male_adult_37_years	chr8	118282241	118282258	118282257	+	High_confidence	7	7	12	0.838009	2.751629	chr8	118282102	118282313	SINE|MIR|MIRc	-	chr8	118282241	118284963	AC023590.1|ENST00000366457.2	+	118282241,118284271	118282330,118284963	0.750000
spleen_male_adult_37_years	chr11	65439462	65439463	65439462	+	RAMPAGE_only	34	34	44	3.072700	3.901436	chr11	65439400	65439684	SINE|Alu|AluSz6	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.954545
spleen_male_adult_37_years	chr11	123061207	123061257	123061256	-	High_confidence	72	73	163	11.382956	5.480180	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.950920
spleen_male_adult_37_years	chr5	23951347	23951372	23951360	+	High_confidence	4	4	13	0.907843	3.251629	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.846154
spleen_male_adult_37_years	chr11	65639851	65639872	65639861	+	High_confidence	9	9	31	2.164857	4.348394	chr11	65639882	65640011	SINE|MIR|MIRc	+	chr11	65639865	65650880	SIPA1|ENST00000527525.5	+	65639865,65640830,65642249,65642462,65644954,65645853,65646220,65646455,65646969,65647383,65649261,65649560,65649756,65649949,65650137,65650400,65650568	65640021,65641600,65642377,65642639,65645129,65645957,65646378,65646663,65647065,65647658,65649480,65649672,65649865,65650051,65650192,65650479,65650880	0.870968
spleen_male_adult_37_years	chr19	51350358	51350369	51350368	-	RAMPAGE_only	4	4	11	0.768175	2.913977	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
spleen_male_adult_37_years	chr19	20423690	20423704	20423703	-	RAMPAGE_only	4	5	10	0.698341	2.721928	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.600000
spleen_male_adult_37_years	chr13	100213886	100213898	100213892	+	RAMPAGE_only	18	18	74	5.167722	5.266239	chr13	100212683	100214433	LINE|L1|L1MA3	-	chr13	100102898	100330672	PCCA|ENST00000636420.1	+	100102898,100111840,100111992,100154978,100157286,100209331,100235841,100257594,100262728,100268688,100273195,100301459,100302923,100307191,100309832,100330560	100102960,100111888,100112061,100155092,100157340,100209463,100235878,100257673,100262831,100268783,100273346,100301603,100302996,100307260,100309908,100330672	0.891892
spleen_male_adult_37_years	chr11	73272149	73272154	73272149	+	High_confidence	11	11	19	1.326848	3.366091	chr11	73272030	73272210	SINE|MIR|MIRb	-	chr11	73272141	73298625	P2RY6|NM_001277208.1	+	73272141,73296484	73272466,73298625	0.894737
spleen_male_adult_37_years	chr11	73272240	73272241	73272240	+	High_confidence	18	18	24	1.676018	3.629220	chr11	73272218	73272327	SINE|MIR|MIRc	+	chr11	73272201	73298617	P2RY6|ENST00000393590.2	+	73272201,73296484	73272466,73298617	0.791667
spleen_male_adult_37_years	chr3	188947224	188947237	188947236	+	High_confidence	7	7	15	1.047511	3.106891	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.533333
spleen_male_adult_37_years	chr14	101120850	101120882	101120866	+	High_confidence	4	4	18	1.257014	3.175123	chr14	101120596	101120905	LTR|ERVL-MaLR|MLT1J2	-	chr14	101120855	101123542	LINC02285|ENST00000557121.1	+	101120855,101122888	101121144,101123542	0.888889
spleen_male_adult_37_years	chr12	93773408	93773412	93773411	+	RAMPAGE_only	14	16	35	2.444193	4.172186	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.628571
spleen_male_adult_37_years	chr15	57300564	57300574	57300564	+	High_confidence	6	6	12	0.838009	2.584963	chr15	57300572	57300621	SINE|MIR|MIRb	+	chr15	57300364	57307761	LINC00926|ENST00000501726.1	+	57300364,57305318,57307541	57300924,57307068,57307761	1.000000
spleen_male_adult_37_years	chr20	1820811	1820842	1820811	-	RAMPAGE_only	21	22	55	3.840875	4.605582	chr20	1820600	1820822	SINE|MIR|MIRb	-	chr20	1786276	1811295	STRG.110604.1	-	1786276,1802093,1810553,1811114	1788108,1804092,1810674,1811295	0.509091
spleen_male_adult_37_years	chr1	36401262	36401266	36401265	+	RAMPAGE_only	5	5	9	0.628507	2.503258	chr1	36400550	36401780	LTR|ERV1|LTR2752	-	chr1	36405821	36407536	STRG.1726.1	+	36405821,36407379	36405938,36407536	0.555556
spleen_male_adult_37_years	chr20	48359906	48359960	48359906	+	High_confidence	4	4	30	2.095023	3.961406	chr20	48359855	48360168	LINE|L2|L2b	+	chr20	48359910	48370638	LINC00494|NR_026958.1	+	48359910,48364888,48366473,48366735,48368079	48360150,48365197,48366633,48367059,48370638	0.833333
spleen_male_adult_37_years	chr8	24387619	24387620	24387619	-	High_confidence	22	22	31	2.164857	3.897587	chr8	24386908	24387825	LTR|ERVK|HERVK22-int	-	chr8	24295813	24387515	AC120193.1|ENST00000518988.5	-	24295813,24296153,24300884,24387160	24296057,24296250,24300929,24387515	1.000000
spleen_male_adult_37_years	chr8	18063215	18063219	18063215	-	High_confidence	3	3	8	0.558673	2.521641	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.750000
spleen_male_adult_37_years	chr22	41940217	41940222	41940217	-	High_confidence	9	9	15	1.047511	2.842371	chr22	41939903	41940386	LINE|L2|L2a	+	chr22	41938736	41940219	STRG.116263.6	-	41938736,41940147	41940035,41940219	0.800000
spleen_male_adult_37_years	chr1	8926877	8926896	8926877	-	RAMPAGE_only	2	2	7	0.488839	2.521641	chr1	8926496	8927320	LTR|ERV1|HERVFH21-int	+	chr1	8907392	8907744	AL139415.1|ENST00000424862.2	-	8907392	8907744	0.571429
spleen_male_adult_37_years	chr17	78381978	78382009	78382008	+	RAMPAGE_only	8	8	18	1.257014	3.690117	chr17	78381887	78382281	LINE|L2|L2c	-	chr17	78378677	78403918	STRG.103847.8	+	78378677,78392475,78396307,78398251,78399347,78400676,78403567	78382785,78392665,78396385,78398351,78399537,78400855,78403918	0.888889
spleen_male_adult_37_years	chr17	68822874	68822890	68822874	+	RAMPAGE_only	10	16	40	2.793363	4.612815	chr17	68821509	68823230	LTR|ERVL|ERV3-16A3_I-int	+	chr17	68838758	68879150	STRG.103367.2	+	68838758,68869671,68875171,68876368	68840023,68869796,68875351,68879150	0.575000
spleen_male_adult_37_years	chr6	168093055	168093063	168093055	-	High_confidence	9	9	25	1.745852	3.513270	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.920000
spleen_male_adult_37_years	chr1	36479618	36479637	36479636	-	RAMPAGE_only	3	4	11	0.768175	2.921928	chr1	36479521	36479739	SINE|MIR|MIRb	+	chr1	36466117	36482899	STRG.1830.11	-	36466117,36467229,36467557,36467821,36468074,36469155,36469651,36471432,36472065,36472237,36472516,36473434,36473763,36475376,36477604,36482810	36466827,36467311,36467651,36467962,36468221,36469257,36469840,36471646,36472139,36472391,36472686,36473622,36473887,36475967,36481537,36482899	0.909091
spleen_male_adult_37_years	chr8	144012228	144012229	144012228	+	High_confidence	4	4	7	0.488839	2.807355	chr8	144011998	144012361	LINE|L2|L2b	-	chr8	144012265	144047028	STRG.62311.1	+	144012265,144039908,144040567,144041231,144041983,144046626	144012726,144040463,144041107,144041371,144042095,144047028	1.000000
spleen_male_adult_37_years	chr12	119704554	119704574	119704573	-	RAMPAGE_only	9	10	37	2.583861	4.337435	chr12	119704528	119704734	DNA|hAT-Charlie|MER20	-	chr12	119701851	119710732	CIT|ENST00000538073.5	-	119701851,119704362,119708178,119710539	119701958,119704455,119708318,119710732	0.540541
spleen_male_adult_37_years	chr11	123061327	123061328	123061327	-	High_confidence	7	7	7	0.488839	2.521641	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.857143
spleen_male_adult_37_years	chr3	33838256	33838281	33838256	+	RAMPAGE_only	7	7	15	1.047511	3.182006	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.800000
spleen_male_adult_37_years	chr17	10034177	10034213	10034194	-	RAMPAGE_only	3	3	15	1.047511	2.985228	chr17	10034133	10034278	SINE|MIR|MIR3	+	chr17	9943120	10036537	GAS7|ENST00000584146.6	-	9943120,9946893,9959201,9969676,9981803,10019776,10027019,10036433	9943236,9946983,9959255,9969762,9981884,10019897,10027099,10036537	0.600000
spleen_male_adult_37_years	chr4	6927300	6927319	6927318	+	RAMPAGE_only	6	6	12	0.838009	3.277613	chr4	6927305	6927415	SINE|MIR|MIR	+	chr4	6909844	7033111	TBC1D14|ENST00000409757.8	+	6909844,6923372,6967303,6994183,6996324,6999084,7001144,7004843,7006631,7009876,7010652,7014447,7025003,7030326	6909951,6924111,6967424,6994302,6996407,6999202,7001251,7004924,7006726,7009948,7010781,7014557,7025262,7033111	0.750000
spleen_male_adult_37_years	chr5	126814074	126814163	126814162	+	RAMPAGE_only	30	31	112	7.821417	5.513517	chr5	126813882	126814194	SINE|Alu|AluSp	-	chr5	126811712	126821081	LMNB1|ENST00000494185.1	+	126811712,126818921,126820909	126811898,126819142,126821081	0.785714
spleen_male_adult_37_years	chr8	129970956	129970957	129970956	-	High_confidence	5	5	7	0.488839	2.521641	chr8	129970879	129971079	SINE|MIR|MIR	+	chr8	129855582	129970990	FAM49B|ENST00000519142.5	-	129855582,129862228,129871374,129879388,129903311,129904498,129912469,129970942	129855747,129862334,129871496,129879471,129903350,129904585,129912515,129970990	1.000000
spleen_male_adult_37_years	chr1	29985667	29985701	29985700	+	RAMPAGE_only	2	2	6	0.419005	2.584963	chr1	29985408	29986178	LTR|ERVL|LTR66	+	chr1	30026357	30026740	STRG.1463.1	+	30026357	30026740	0.500000
spleen_male_adult_37_years	chr8	24387516	24387534	24387516	-	High_confidence	5	5	12	0.838009	3.418296	chr8	24386908	24387825	LTR|ERVK|HERVK22-int	-	chr8	24295813	24387515	AC120193.1|ENST00000518988.5	-	24295813,24296153,24300884,24387160	24296057,24296250,24300929,24387515	0.833333
spleen_male_adult_37_years	chr7	37694462	37694463	37694462	+	RAMPAGE_only	8	8	9	0.628507	3.000000	chr7	37694434	37694535	LINE|L1|L1M2a	-	chr7	37692235	37702699	STRG.51228.5	+	37692235	37702699	0.555556
spleen_male_adult_37_years	chr2	37829161	37829188	37829161	-	High_confidence	13	14	46	3.212368	4.300417	chr2	37828936	37829243	SINE|Alu|AluJr	+	chr2	37825217	37829094	STRG.12613.1	-	37825217,37828932	37827878,37829094	0.913043
spleen_male_adult_37_years	chr1	21227175	21227193	21227175	-	RAMPAGE_only	3	3	9	0.628507	2.500000	chr1	21227023	21227146	SINE|Alu|AluJr4	-	chr1	21218583	21279549	ECE1|ENST00000357071.8	-	21218583,21221746,21225249,21227158,21227930,21233557,21235849,21236745,21238133,21244988,21247220,21255946,21257524,21258692,21260270,21272698,21279190	21220131,21221842,21225440,21227226,21228041,21233661,21235927,21236844,21238244,21245103,21247363,21256138,21257590,21258839,21260392,21272911,21279549	0.888889
spleen_male_adult_37_years	chr20	18794077	18794086	18794077	+	High_confidence	36	36	81	5.656561	4.676319	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.987654
spleen_male_adult_37_years	chr2	72693353	72693354	72693353	-	RAMPAGE_only	27	27	34	2.374359	3.914689	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.705882
spleen_male_adult_37_years	chr5	109383431	109383447	109383446	-	High_confidence	5	5	13	0.907843	3.392747	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.923077
spleen_male_adult_37_years	chr22	39021125	39021156	39021155	+	High_confidence	73	73	253	17.668023	6.014882	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.992095
spleen_male_adult_37_years	chr2	164761350	164761404	164761355	-	RAMPAGE_only	11	12	67	4.678884	4.979934	chr2	164761126	164761399	SINE|Alu|AluSp	+	chr2	164722305	164773754	COBLL1|ENST00000452626.5	-	164722305,164722424,164727968,164729913,164743686,164773706	164722311,164722522,164728197,164730115,164743875,164773754	0.641791
spleen_male_adult_37_years	chr6	2968829	2968832	2968831	-	RAMPAGE_only	5	8	11	0.768175	3.095795	chr6	2968783	2968841	LINE|L1|HAL1	-	chr6	2948162	2970743	SERPINB6|ENST00000644178.1	-	2948162,2948913,2953043,2954591,2955523,2959167,2966399	2948699,2949069,2953186,2954709,2955670,2959342,2970743	1.000000
spleen_male_adult_37_years	chr5	180909572	180909577	180909572	+	High_confidence	30	33	53	3.701206	4.546238	chr5	180909597	180909731	SINE|Alu|FLAM_C	+	chr5	180909572	180948353	BTNL8|ENST00000514448.5	+	180909572,180911338,180947511	180909697,180911614,180948353	0.754717
spleen_male_adult_37_years	chr6	57961647	57961650	57961649	+	High_confidence	15	20	25	1.745852	3.762267	chr6	57961605	57961763	SINE|Alu|AluSx1	-	chr6	57961653	57973886	STRG.44541.2	+	57961653,57971594,57972093	57962248,57971656,57973886	0.640000
spleen_male_adult_37_years	chr1	174874418	174874446	174874418	+	High_confidence	15	19	92	6.424736	5.604361	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.630435
spleen_male_adult_37_years	chr6	2881568	2881636	2881635	-	High_confidence	46	46	161	11.243288	5.835217	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854121	2881654	STRG.41940.3	-	2854121,2881499	2855690,2881654	0.850932
spleen_male_adult_37_years	chr4	128570480	128570488	128570480	-	High_confidence	3	4	11	0.768175	2.594907	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	1.000000
spleen_male_adult_37_years	chr12	75481390	75481409	75481403	+	High_confidence	4	5	10	0.698341	2.947703	chr12	75481422	75481626	SINE|MIR|MIRb	+	chr12	75481203	75495662	GLIPR1|ENST00000550491.1	+	75481203,75481833,75490405,75495576	75481425,75482079,75490518,75495662	0.900000
spleen_male_adult_37_years	chr8	39083039	39083066	39083065	+	RAMPAGE_only	9	9	20	1.396682	3.281373	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.650000
spleen_male_adult_37_years	chr5	170267210	170267290	170267210	-	High_confidence	18	19	133	9.287933	4.869262	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	STRG.41126.3	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170267296	0.977444
spleen_male_adult_37_years	chr7	102973491	102973564	102973563	+	High_confidence	26	26	128	8.938763	6.074399	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973521	102988856	NFE4|ENST00000420058.1	+	102973521,102978380,102988032,102988374	102973771,102978520,102988232,102988856	0.796875
spleen_male_adult_37_years	chr19	54616967	54617148	54616967	+	High_confidence	344	381	809	56.495775	7.309189	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54616929	54637556	LILRB1|NM_006669.6	+	54616929,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637556	0.846724
spleen_male_adult_37_years	chr7	2242922	2242923	2242922	+	High_confidence	11	11	11	0.768175	3.095795	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
spleen_male_adult_37_years	chr15	93863033	93863066	93863065	+	High_confidence	152	152	421	29.400150	7.134457	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.798100
spleen_male_adult_37_years	chr1	97904654	97904676	97904654	-	RAMPAGE_only	63	81	209	14.595324	6.358579	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.607656
spleen_male_adult_37_years	chr17	68944801	68944838	68944837	+	RAMPAGE_only	17	19	61	4.259879	2.726111	chr17	68944814	68945164	LINE|L1|L1MCc	+	chr17	69004713	69018323	ABCA9-AS1|ENST00000458677.1	+	69004713,69011982,69012251,69018103	69004793,69012103,69012353,69018323	0.868852
spleen_male_adult_37_years	chr10	79446860	79446869	79446860	-	RAMPAGE_only	6	6	12	0.838009	2.855389	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	1.000000
spleen_male_adult_37_years	chr7	45940414	45940438	45940414	+	High_confidence	12	15	33	2.304525	4.331977	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45940460	45940880	STRG.51667.1	+	45940460	45940880	0.969697
spleen_male_adult_37_years	chr6	144533070	144533113	144533112	+	RAMPAGE_only	2	2	7	0.488839	2.584963	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144344200	144678552	STRG.48272.3	+	144344200,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405	144344304,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678552	0.571429
spleen_male_adult_37_years	chr11	9716979	9716981	9716980	+	RAMPAGE_only	3	6	7	0.488839	2.521641	chr11	9716634	9717133	LINE|L2|L2	-	chr11	9720065	9738259	SWAP70|ENST00000534662.1	+	9720065,9724657,9728052,9729342,9732528,9738212	9720483,9724885,9728199,9729451,9732710,9738259	0.857143
spleen_male_adult_37_years	chr19	49560350	49560402	49560363	-	High_confidence	43	46	108	7.542081	3.538205	chr19	49560291	49560459	SINE|MIR|MIR	+	chr19	49557876	49560397	NOSIP|ENST00000598839.1	-	49557876,49558061,49558896,49559933	49557945,49558199,49558978,49560397	0.962963
spleen_male_adult_37_years	chr19	4541649	4541650	4541649	-	RAMPAGE_only	7	7	8	0.558673	2.521641	chr19	4541356	4541622	SINE|Alu|AluSz	-	chr19	4536408	4540474	LRG1|ENST00000306390.6	-	4536408,4539981	4538951,4540474	0.875000
spleen_male_adult_37_years	chr6	30830570	30830641	30830640	-	High_confidence	11	18	84	5.866063	5.492510	chr6	30830591	30830730	LTR|Gypsy|MamGypLTR1b	-	chr6	30798182	30830623	STRG.43422.1	-	30798182,30814402,30830514	30798772,30814772,30830623	0.690476
spleen_male_adult_37_years	chr3	152244038	152244039	152244038	+	High_confidence	11	12	12	0.838009	2.751629	chr3	152243797	152244104	SINE|Alu|AluSx1	-	chr3	152243827	152300110	MBNL1|ENST00000477171.1	+	152243827,152244320,152299404	152244040,152244440,152300110	1.000000
spleen_male_adult_37_years	chr12	7100088	7100106	7100105	-	RAMPAGE_only	4	4	8	0.558673	2.500000	chr12	7100054	7100129	DNA|hAT-Charlie|MER102b	+	chr12	7094553	7108303	STRG.78892.5	-	7094553,7099900,7101897,7108250	7099760,7100026,7102087,7108303	0.625000
spleen_male_adult_37_years	chr19	17556523	17556557	17556555	+	High_confidence	10	18	51	3.561538	4.304806	chr19	17556574	17556631	SINE|MIR|MIR	+	chr19	17556560	17568577	COLGALT1|ENST00000600474.1	+	17556560,17559310,17560347,17567405,17568508	17556679,17559421,17560465,17567540,17568577	0.862745
spleen_male_adult_37_years	chr11	14325268	14325278	14325268	-	RAMPAGE_only	7	7	15	1.047511	2.950212	chr11	14325155	14325289	SINE|MIR|MIR	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.800000
spleen_male_adult_37_years	chr3	197913254	197913296	197913295	-	High_confidence	6	6	21	1.466516	3.326360	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.904762
spleen_male_adult_37_years	chr6	119478632	119478634	119478633	-	RAMPAGE_only	4	8	11	0.768175	2.921928	chr6	119478612	119478930	SINE|Alu|AluSz	-	chr6	119473247	119491358	STRG.47002.5	-	119473247	119491358	0.909091
spleen_male_adult_37_years	chr2	203533404	203533440	203533429	-	High_confidence	39	45	115	8.030920	5.780871	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.852174
spleen_male_adult_37_years	chr15	89815396	89815437	89815415	-	High_confidence	4	4	18	1.257014	3.392147	chr15	89815348	89815654	SINE|Alu|AluSz	-	chr15	89806272	89815401	ANPEP|ENST00000559874.1	-	89806272,89815272	89806806,89815401	1.000000
spleen_male_adult_37_years	chr1	51403428	51403433	51403428	-	RAMPAGE_only	9	9	17	1.187179	3.077820	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.941176
spleen_male_adult_37_years	chr13	24272666	24272674	24272666	+	High_confidence	4	4	10	0.698341	2.725481	chr13	24272710	24272887	SINE|MIR|MIRb	+	chr13	24272688	24278769	SPATA13|ENST00000488060.1	+	24272688,24278613	24273137,24278769	0.800000
spleen_male_adult_37_years	chr13	106561950	106561951	106561950	-	High_confidence	5	6	8	0.558673	2.521641	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.750000
spleen_male_adult_37_years	chr6	137218701	137218726	137218725	-	High_confidence	6	6	11	0.768175	2.921928	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.909091
spleen_male_adult_37_years	chr8	23243634	23243635	23243634	+	High_confidence	116	116	124	8.659427	6.053213	chr8	23243551	23243732	LTR|ERV1|LTR21A	+	chr8	23243636	23262000	CHMP7|NM_152272.4	+	23243636,23246255,23249209,23255246,23256459,23258032,23258329,23258731,23259065,23260143,23260537	23243844,23246994,23249381,23255432,23256593,23258081,23258449,23258830,23259126,23260323,23262000	0.967742
spleen_male_adult_37_years	chr18	55893019	55893039	55893031	+	High_confidence	5	5	16	1.117345	3.000000	chr18	55887412	55893439	LINE|L1|L1PA3	-	chr18	55893037	56023462	AC009271.1|ENST00000589440.1	+	55893037,56017727,56023401	55893442,56017779,56023462	0.687500
spleen_male_adult_37_years	chrX	5726324	5726325	5726324	-	High_confidence	75	81	97	6.773906	4.583133	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5719300	5726309	STRG.116951.1	-	5719300,5725929	5719872,5726309	0.948454
spleen_male_adult_37_years	chr1	169662003	169662004	169662003	+	High_confidence	69	69	78	5.447059	4.411147	chr1	169661033	169662412	LTR|ERV1|LTR12C	+	chr1	169662006	169853085	C1orf112|ENST00000498289.5	+	169662006,169683468,169683755,169783810,169784876,169798856,169800882,169802620,169803168,169804111,169806003,169807790,169821678,169823407,169827050,169827710,169829262,169830258,169830695,169832416,169836926,169842416,169843673,169847689,169849499,169850264,169850453,169851816,169852789	169662523,169683625,169683932,169783928,169784913,169798958,169800971,169802725,169803309,169804240,169806088,169807929,169821759,169823472,169827199,169827840,169829449,169830341,169830747,169832506,169837112,169842539,169843769,169847803,169849604,169850327,169850566,169851936,169853085	0.948718
spleen_male_adult_37_years	chr10	102449836	102449845	102449836	+	High_confidence	16	16	30	2.095023	4.164498	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.700000
spleen_male_adult_37_years	chr6	79631294	79631329	79631328	+	High_confidence	37	38	114	7.961086	5.567392	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.973684
spleen_male_adult_37_years	chr22	26512129	26512141	26512129	-	High_confidence	3	4	8	0.558673	2.500000	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	1.000000
spleen_male_adult_37_years	chr7	131522770	131522795	131522770	-	RAMPAGE_only	7	7	16	1.117345	2.852217	chr7	131522684	131523276	LINE|L1|L1MB8	-	chr7	131500261	131556563	PODXL|ENST00000446198.5	-	131500261,131505867,131506259,131506578,131508950,131510827,131556259	131504508,131506035,131506321,131506726,131509585,131511433,131556563	1.000000
spleen_male_adult_37_years	chr12	126772230	126772251	126772232	-	High_confidence	12	21	69	4.818552	4.878179	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126730700	126772262	LINC00944|NR_033878.1	-	126730700,126732342,126746260,126747930,126772078	126730803,126732407,126746332,126748127,126772262	0.739130
spleen_male_adult_37_years	chr1	146261759	146261771	146261759	-	High_confidence	19	20	45	3.142534	4.507743	chr1	146261751	146262112	LTR|ERVL-MaLR|MLT1M	+	chr1	146255286	146261753	STRG.6291.14	-	146255286	146261753	0.555556
spleen_male_adult_37_years	chr2	29114149	29114174	29114149	+	High_confidence	5	5	21	1.466516	3.689704	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	1.000000
spleen_male_adult_37_years	chr12	121582260	121582286	121582278	-	RAMPAGE_only	6	6	15	1.047511	3.773557	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121429095	121581015	KDM2B|NM_032590.4	-	121429095,121439856,121440815,121441069,121442156,121442991,121443679,121444011,121444449,121445274,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549459,121574546,121575780,121578801,121580785	121430469,121440075,121440977,121441233,121442836,121443030,121443793,121444272,121444536,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548983,121549638,121574593,121575859,121578946,121581015	0.733333
spleen_male_adult_37_years	chr6	43013392	43013393	43013392	-	High_confidence	10	10	11	0.768175	3.321928	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.909091
spleen_male_adult_37_years	chr3	50312388	50312401	50312400	-	High_confidence	10	14	35	2.444193	4.219528	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50299888	50312381	HYAL1|NM_153281.1	-	50299888,50300987,50302056,50303787,50309658,50312263	50300800,50301077,50302980,50303953,50309777,50312381	0.742857
spleen_male_adult_37_years	chr14	81427132	81427158	81427147	-	High_confidence	4	6	17	1.187179	3.292770	chr14	81426946	81427161	SINE|MIR|MIR	-	chr14	81260649	81427212	STON2|NM_033104.3	-	81260649,81276900,81370987,81395893,81398294,81427101	81270872,81278739,81371185,81396178,81398580,81427212	1.000000
spleen_male_adult_37_years	chr11	108224068	108224075	108224074	+	High_confidence	93	95	156	10.894117	4.711068	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108287714	STRG.77109.3	+	108224077,108224783,108227594,108227775,108229177,108235669,108243952,108244787,108246963,108248932,108250700,108251836,108252816,108253813,108256214,108257480,108258985,108267170,108268409,108271063,108271250,108272531,108272721,108279490,108280994,108282709,108284226,108287599	108224136,108224871,108227696,108227888,108229323,108235834,108244118,108245026,108247127,108249102,108251072,108252031,108252912,108254039,108256340,108257606,108259075,108267342,108268609,108271146,108271406,108272607,108272852,108279608,108281168,108282879,108284473,108287714	0.935897
spleen_male_adult_37_years	chr7	102822458	102822459	102822458	-	RAMPAGE_only	7	9	9	0.628507	2.503258	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	1.000000
spleen_male_adult_37_years	chr17	47067498	47067518	47067498	-	High_confidence	115	145	659	46.020662	5.814381	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.930197
spleen_male_adult_37_years	chr1	202551736	202551796	202551736	+	RAMPAGE_only	34	38	192	13.408144	6.270968	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.520833
spleen_male_adult_37_years	chr3	50312756	50312763	50312762	-	High_confidence	6	6	10	0.698341	2.725481	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50300481	50312988	STRG.23571.1	-	50300481,50300987,50302056,50303465,50303787,50309658,50312263	50300800,50301077,50302980,50303563,50303953,50309777,50312988	0.900000
spleen_male_adult_37_years	chr10	28335269	28335296	28335269	-	High_confidence	41	54	151	10.544947	4.237127	chr10	28334857	28335233	LTR|ERVL-MaLR|MLT1F	-	chr10	28333875	28335292	STRG.68982.1	-	28333875	28335292	0.953642
spleen_male_adult_37_years	chr12	104608334	104608335	104608334	+	RAMPAGE_only	11	11	15	1.047511	2.692381	chr12	104608240	104608662	LTR|ERV1|MER83	+	chr12	104457000	104637289	STRG.84080.1	+	104457000,104601905,104606808,104635204	104457514,104606771,104634823,104637289	0.933333
spleen_male_adult_37_years	chr6	113873339	113873392	113873339	-	High_confidence	4	8	25	1.745852	3.973661	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	1.000000
spleen_male_adult_37_years	chr2	96256922	96256923	96256922	-	RAMPAGE_only	25	25	26	1.815686	3.893661	chr2	96256725	96256974	LINE|L1|HAL1	+	chr2	96253799	96260595	TMEM127|ENST00000435268.1	-	96253799,96254832,96260494	96254115,96254997,96260595	0.807692
spleen_male_adult_37_years	chr1	148712517	148712534	148712533	-	High_confidence	38	40	76	5.307390	5.240726	chr1	148712528	148712895	LTR|ERVL-MaLR|MLT1M	+	chr1	148708065	148712536	STRG.6359.3	-	148708065	148712536	0.565789
spleen_male_adult_37_years	chr11	1897046	1897081	1897080	+	High_confidence	2	3	6	0.419005	2.584963	chr11	1896880	1897269	LTR|ERV1|MER57B2	-	chr11	1897014	1908656	LINC01150|ENST00000455671.2	+	1897014,1901715,1902589,1903103,1907831	1897145,1901770,1902724,1903256,1908656	0.833333
spleen_male_adult_37_years	chr8	143281655	143281687	143281686	-	High_confidence	23	23	101	7.053243	4.748240	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.742574
spleen_male_adult_37_years	chr10	60728081	60728092	60728081	-	RAMPAGE_only	4	4	10	0.698341	2.646439	chr10	60727998	60728149	DNA|hAT-Blackjack|MER63B	+	chr10	60507500	60733324	ANK3|ENST00000510382.1	-	60507500,60615185,60733262	60508625,60615224,60733324	0.500000
spleen_male_adult_37_years	chr11	1870255	1870271	1870255	+	High_confidence	14	14	27	1.885520	4.469670	chr11	1870205	1870284	SINE|MIR|MIRb	-	chr11	1870251	1892263	LSP1|NM_001289005.1	+	1870251,1880086,1881431,1883418,1883931,1884279,1884499,1886731,1887236,1887473,1891772	1870661,1880224,1881596,1883560,1884024,1884323,1884581,1886866,1887314,1887576,1892263	0.814815
spleen_male_adult_37_years	chr15	63497823	63497855	63497854	-	RAMPAGE_only	5	6	18	1.257014	3.572431	chr15	63497648	63498105	LINE|L2|L2c	+	chr15	63490033	63491884	STRG.94731.1	-	63490033	63491884	0.611111
spleen_male_adult_37_years	chr19	6469597	6469603	6469597	-	High_confidence	6	6	10	0.698341	2.725481	chr19	6469334	6469583	SINE|Alu|AluJo	-	chr19	6467949	6469651	DENND1C|ENST00000591795.1	-	6467949,6468845,6469595	6468645,6468953,6469651	0.800000
spleen_male_adult_37_years	chr5	133089677	133089678	133089677	+	RAMPAGE_only	16	16	18	1.257014	3.794653	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
spleen_male_adult_37_years	chr13	48492622	48492656	48492655	-	High_confidence	10	10	34	2.374359	4.415458	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.852941
spleen_male_adult_37_years	chr6	154162808	154162817	154162816	-	RAMPAGE_only	8	10	13	0.907843	3.026987	chr6	154161849	154163683	LINE|L2|L2a	+	chr6	154158923	154213330	IPCEF1|ENST00000522590.1	-	154158923,154167919,154199667,154212769	154160040,154168113,154200040,154213330	0.769231
spleen_male_adult_37_years	chr20	46399505	46399507	46399506	-	RAMPAGE_only	14	19	24	1.676018	4.136842	chr20	46399325	46399711	LINE|L2|L2c	+	chr20	46366049	46406559	ELMO2|ENST00000372176.5	-	46366049,46368890,46370442,46371351,46371578,46371805,46373398,46374331,46374535,46375235,46375667,46380252,46383415,46386123,46387337,46389038,46393092,46393528,46393980,46394404,46398696,46406547	46367560,46368968,46370525,46371459,46371691,46371969,46373535,46374440,46374640,46375370,46375790,46380303,46383494,46386275,46387437,46389220,46393143,46393601,46394089,46394532,46398771,46406559	0.583333
spleen_male_adult_37_years	chr2	43143091	43143114	43143113	-	High_confidence	14	15	29	2.025188	4.351823	chr2	43142863	43143298	LTR|ERVL-MaLR|MLT1N2	-	chr2	43097745	43143219	STRG.12889.1	-	43097745,43132369,43143025	43098040,43132480,43143219	0.620690
spleen_male_adult_37_years	chr1	20686381	20686404	20686403	-	High_confidence	13	13	29	2.025188	3.784898	chr1	20686389	20686457	SINE|MIR|MIR3	-	chr1	20670428	20686375	KIF17|ENST00000498225.1	-	20670428,20671937,20682652,20684808,20686045,20686343	20670488,20672196,20682884,20685020,20686126,20686375	1.000000
spleen_male_adult_37_years	chr11	117185994	117186040	117185994	+	High_confidence	21	21	91	6.354902	5.430726	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.879121
spleen_male_adult_37_years	chr5	39217679	39217695	39217693	-	RAMPAGE_only	3	5	9	0.628507	2.725481	chr5	39217514	39217714	SINE|MIR|MIR	-	chr5	39107301	39219573	FYB1|ENST00000505428.5	-	39107301,39108230,39110355,39118873,39119534,39122335,39124252,39125997,39127740,39130589,39134207,39134854,39137599,39138656,39139232,39141094,39153447,39201825,39219442	39107465,39108262,39110389,39119036,39119634,39122402,39124278,39126135,39127807,39130612,39134349,39135014,39137720,39138691,39139252,39141141,39153604,39202987,39219573	0.777778
spleen_male_adult_37_years	chr14	94581614	94581620	94581614	+	High_confidence	3	4	9	0.628507	2.947703	chr14	94581654	94581760	SINE|MIR|MIRb	+	chr14	94581614	94593115	SERPINA5|ENST00000554276.1	+	94581614,94587345,94590040,94590748,94592056	94581710,94587981,94590311,94590896,94593115	1.000000
spleen_male_adult_37_years	chr18	7946875	7946898	7946878	+	High_confidence	53	54	192	13.408144	5.421400	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.947917
spleen_male_adult_37_years	chr16	20674497	20674498	20674497	+	High_confidence	21	21	21	1.466516	3.308751	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.904762
spleen_male_adult_37_years	chr9	80232096	80232099	80232098	+	High_confidence	214	262	311	21.718400	6.676825	chr9	80230845	80232628	LINE|L1|L1PA16	-	chr9	80232113	80235397	STRG.65079.1	+	80232113	80235397	0.691318
spleen_male_adult_37_years	chr8	27431398	27431399	27431398	+	High_confidence	6	8	9	0.628507	2.500000	chr8	27431334	27431403	LINE|RTE-BovB|MamRTE1	+	chr8	27430898	27452559	PTK2B|ENST00000397497.8	+	27430898,27432259,27433434,27434092,27434512,27435742,27436250,27437121,27437395,27437764,27439030,27439308,27440236,27442874,27444205,27450748,27451042,27451484	27431472,27432361,27433552,27434132,27434559,27435793,27436348,27437206,27437496,27437880,27439131,27439398,27440441,27442983,27444271,27450895,27451078,27452559	0.777778
spleen_male_adult_37_years	chr4	54264971	54265041	54265040	+	RAMPAGE_only	5	5	30	2.095023	4.056565	chr4	54265070	54265216	SINE|MIR|MIR3	+	chr4	54229310	54281978	PDGFRA|ENST00000509490.5	+	54229310,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54278818,54280315,54281580	54229415,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54278971,54280482,54281978	1.000000
spleen_male_adult_37_years	chrX	20204049	20204050	20204049	-	RAMPAGE_only	13	13	13	0.907843	2.623517	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	1.000000
spleen_male_adult_37_years	chr11	108225493	108225505	108225493	+	High_confidence	7	7	23	1.606184	3.114589	chr11	108225464	108225775	SINE|Alu|AluSg	-	chr11	108224782	108231594	ATM|ENST00000638443.1	+	108224782,108227594,108227775,108229177,108231487	108224871,108227696,108227888,108230912,108231594	1.000000
spleen_male_adult_37_years	chr1	17348721	17348744	17348743	+	High_confidence	3	3	8	0.558673	2.500000	chr1	17348600	17348756	SINE|MIR|MIRb	-	chr1	17348729	17358849	PADI4|ENST00000467001.1	+	17348729,17354532,17355982,17356356,17358837	17348785,17354687,17356127,17356459,17358849	1.000000
spleen_male_adult_37_years	chr9	121314002	121314021	121314002	+	RAMPAGE_only	45	46	88	6.145399	4.052551	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.988636
spleen_male_adult_37_years	chr12	126772336	126772337	126772336	-	High_confidence	15	16	22	1.536350	3.558519	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126748055	126772356	LINC00944|ENST00000542248.5	-	126748055,126760931,126763414,126772078	126748127,126761045,126763498,126772356	0.772727
spleen_male_adult_37_years	chr6	31587007	31587021	31587009	+	High_confidence	94	145	238	16.620512	6.236714	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.962185
spleen_male_adult_37_years	chr1	206052890	206052915	206052890	+	RAMPAGE_only	25	26	40	2.793363	3.498711	chr1	206052518	206053000	LTR|ERV1|LTR2B	+	chr1	206037246	206053334	BX571818.1|ENST00000585172.2	+	206037246,206051852,206053020	206037299,206052001,206053334	0.625000
spleen_male_adult_37_years	chr7	37353636	37353672	37353636	-	High_confidence	45	46	159	11.103619	5.224283	chr7	37353223	37353900	LTR|ERV1|LTR12_	-	chr7	36852905	37353668	ELMO1|NM_001206482.1	-	36852905,36861658,36870392,36878009,36887559,36894853,37013298,37096618,37133129,37211385,37213334,37216644,37222614,37224878,37233094,37244355,37259180,37271831,37314849,37315919,37342612,37353031	36855751,36861736,36870475,36878117,36887672,36895017,37013435,37096727,37133234,37211517,37213457,37216695,37222693,37225030,37233194,37244391,37259350,37271882,37314922,37315960,37342763,37353668	0.974843
spleen_male_adult_37_years	chr15	32613832	32613863	32613862	+	High_confidence	6	6	13	0.907843	3.392747	chr15	32613860	32614055	LINE|CR1|L3	+	chr15	32613732	32615111	AC123768.2|ENST00000500941.2	+	32613732,32614108,32614739	32613998,32614202,32615111	0.615385
spleen_male_adult_37_years	chr19	54356689	54356690	54356689	-	High_confidence	9	9	9	0.628507	2.725481	chr19	54356653	54356883	SINE|MIR|MIRb	-	chr19	54354674	54357347	LAIR1|ENST00000475389.5	-	54354674,54355953,54356229,54356355,54356490	54355414,54356006,54356267,54356398,54357347	0.888889
spleen_male_adult_37_years	chr11	71999607	71999642	71999607	+	High_confidence	9	15	52	3.631372	4.804491	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999600	72002697	IL18BP|ENST00000534583.5	+	71999600,72000350,72001200,72001404,72001783,72002552	72000012,72000557,72001324,72001552,72001948,72002697	0.980769
spleen_male_adult_37_years	chr3	134485443	134485489	134485443	-	High_confidence	9	9	61	4.259879	5.053528	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.786885
spleen_male_adult_37_years	chr1	54851965	54851966	54851965	+	High_confidence	11	11	13	0.907843	2.777363	chr1	54851851	54852077	SINE|MIR|MIRb	-	chr1	54852237	54852617	STRG.2932.1	+	54852237	54852617	0.538462
spleen_male_adult_37_years	chr19	46731721	46731735	46731721	-	High_confidence	5	5	10	0.698341	2.721928	chr19	46731643	46732623	LINE|L2|L2a	+	chr19	46728684	46731788	STRN4|ENST00000596016.5	-	46728684,46730731,46731467	46728777,46730873,46731788	0.700000
spleen_male_adult_37_years	chr11	77175226	77175303	77175252	+	High_confidence	19	19	155	10.824283	5.856213	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.941935
spleen_male_adult_37_years	chr8	47360804	47360848	47360804	+	High_confidence	11	11	31	2.164857	4.389365	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47440397	SPIDR|ENST00000521918.6	+	47360818,47396375,47407860,47440322	47360949,47396626,47407961,47440397	0.709677
spleen_male_adult_37_years	chr16	58421322	58421323	58421322	+	High_confidence	6	6	7	0.488839	2.584963	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421325	58436169	LINC02137|ENST00000562322.1	+	58421325,58435691	58421385,58436169	0.571429
spleen_male_adult_37_years	chr11	102417085	102417086	102417085	-	RAMPAGE_only	10	10	12	0.838009	2.913977	chr11	102416215	102419177	LINE|L1|L1PA15	+	chr11	102398855	102451231	TMEM123|ENST00000528969.5	-	102398855,102401538,102401915,102448811,102451201	102398891,102401692,102402206,102448868,102451231	0.916667
spleen_male_adult_37_years	chr1	53368110	53368160	53368159	-	High_confidence	5	5	19	1.326848	3.266333	chr1	53367866	53368194	LINE|L2|L2b	+	chr1	53366667	53368245	AC119428.2|ENST00000449958.1	-	53366667,53368005	53367277,53368245	0.842105
spleen_male_adult_37_years	chr20	35605298	35605326	35605298	-	High_confidence	5	6	18	1.257014	3.614369	chr20	35605067	35605498	LINE|L2|L2c	+	chr20	35600698	35605326	FER1L4|ENST00000325076.9	-	35600698,35601531,35601805,35603009,35603258,35603796,35604303,35604529,35605101	35600924,35601718,35602751,35603141,35603319,35603967,35604345,35604621,35605326	0.833333
spleen_male_adult_37_years	chr7	45940622	45940660	45940622	+	High_confidence	4	4	29	2.025188	3.457867	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45940460	45940880	STRG.51667.1	+	45940460	45940880	0.551724
spleen_male_adult_37_years	chr3	69237149	69237186	69237185	-	RAMPAGE_only	3	3	9	0.628507	2.503258	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.666667
spleen_male_adult_37_years	chr11	912727	912760	912727	-	RAMPAGE_only	9	9	24	1.676018	3.663533	chr11	912562	912867	SINE|Alu|AluY	+	chr11	867858	910874	CHID1|NM_001142674.1	-	867858,870120,870418,883147,884067,893426,899339,900003,900935,902197,902961,904705,908541,910774	869956,870163,870499,883303,884169,893519,899401,900110,900980,902330,903111,904859,908645,910874	0.583333
spleen_male_adult_37_years	chr3	134597816	134597837	134597836	+	High_confidence	2	3	6	0.419005	2.584963	chr3	134597473	134597869	LTR|ERVL|ERV3-16A3_LTR	+	chr3	134597823	134628104	EPHB1|ENST00000472904.5	+	134597823,134615183,134627939	134597984,134615438,134628104	0.666667
spleen_male_adult_37_years	chr7	100217791	100217798	100217797	-	RAMPAGE_only	8	9	15	1.047511	3.182006	chr7	100217446	100218453	LTR|ERVK|LTR13	-	chr7	100202289	100223698	CASTOR3|ENST00000437485.5	-	100202289,100223569	100202603,100223698	0.733333
spleen_male_adult_37_years	chr10	7186610	7186630	7186629	-	RAMPAGE_only	8	11	25	1.745852	3.849224	chr10	7186480	7186609	SINE|Alu|AluJo	-	chr10	7158425	7294345	STRG.68345.3	-	7158425,7170927,7171894,7172494,7188623,7197547,7200413,7202479,7205814,7220410,7227854,7243557,7248547,7276891,7283903	7163910,7171056,7172158,7176165,7188733,7197687,7200484,7202522,7205928,7220537,7227937,7243705,7248649,7276989,7294345	0.880000
spleen_male_adult_37_years	chr9	127847120	127847135	127847134	-	High_confidence	8	8	18	1.257014	3.836592	chr9	127847119	127847312	SINE|MIR|MIR	-	chr9	127815011	127847167	ENG|NM_001278138.1	-	127815011,127815942,127817148,127818119,127818715,127819621,127819899,127824303,127824799,127825230,127825694,127826509,127829686,127843093,127846942	127815806,127816053,127817203,127818377,127818832,127819660,127820037,127824446,127824974,127825357,127825860,127826672,127829827,127843245,127847167	1.000000
spleen_male_adult_37_years	chr3	187021850	187021852	187021850	+	High_confidence	140	274	367	25.629109	6.167008	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.923706
spleen_male_adult_37_years	chr5	138369928	138369978	138369928	+	RAMPAGE_only	3	3	20	1.396682	3.721928	chr5	138369795	138370010	SINE|MIR|MIRc	-	chr5	138372673	138437028	KDM3B|ENST00000510866.5	+	138372673,138375092,138377719,138379583,138381515,138386021,138386288,138391012,138393170,138398177,138399859,138415131,138417482,138418952,138420705,138424074,138425410,138426974,138427188,138427966,138429825,138430248,138431424,138435619	138372841,138375206,138377825,138379708,138381590,138386190,138386621,138392261,138393372,138398392,138400012,138415239,138417610,138419232,138420962,138424341,138425582,138427065,138427319,138428086,138429965,138430425,138431559,138437028	1.000000
spleen_male_adult_37_years	chr6	31186117	31186151	31186117	-	High_confidence	10	10	20	1.396682	4.021928	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31177432	31186504	STRG.43433.1	-	31177432,31186025	31177899,31186504	0.500000
spleen_male_adult_37_years	chr10	46269605	46269610	46269609	-	High_confidence	26	28	86	6.005731	5.136058	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.848837
spleen_male_adult_37_years	chr19	40580226	40580249	40580226	+	High_confidence	21	24	39	2.723529	4.611949	chr19	40580061	40580239	DNA|hAT-Charlie|MER113	-	chr19	40580166	40591395	SHKBP1|ENST00000598201.5	+	40580166,40580565,40580745,40582350,40583397,40583600,40586773,40588623,40589081,40590243,40590729,40590975	40580485,40580656,40580936,40582466,40583485,40583717,40586944,40588779,40589178,40590422,40590853,40591395	1.000000
spleen_male_adult_37_years	chr12	9674490	9674491	9674490	+	High_confidence	5	5	7	0.488839	2.521641	chr12	9672445	9674544	LINE|L1|L1PA10	-	chr12	9674007	9693336	CLEC2D|ENST00000476198.2	+	9674007,9680922,9687901,9692827,9693033	9674210,9681033,9688161,9692931,9693336	0.571429
spleen_male_adult_37_years	chr9	20658312	20658347	20658338	+	High_confidence	20	22	62	4.329713	4.190306	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658316	20770112	STRG.63203.4	+	20658316,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.629032
spleen_male_adult_37_years	chr16	11670611	11670619	11670611	+	RAMPAGE_only	5	5	12	0.838009	3.188722	chr16	11670570	11670680	SINE|MIR|MIRc	-	chr16	11668432	11679159	SNN|NM_003498.5	+	11668432,11675974	11668540,11679159	0.916667
spleen_male_adult_37_years	chr22	19525279	19525304	19525279	-	High_confidence	5	5	12	0.838009	2.855389	chr22	19525203	19525280	LINE|L2|L2b	+	chr22	19523023	19525337	CLDN5|NM_001130861.1	-	19523023	19525337	1.000000
spleen_male_adult_37_years	chr4	79492406	79492410	79492406	+	High_confidence	9	9	21	1.466516	3.384184	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492415	79576460	LINC00989|ENST00000508174.5	+	79492415,79493151,79513784,79575140	79492623,79493585,79513902,79576460	0.952381
spleen_male_adult_37_years	chr1	19344364	19344410	19344364	-	RAMPAGE_only	6	7	23	1.606184	3.308751	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.913043
spleen_male_adult_37_years	chr14	101819735	101819780	101819748	+	RAMPAGE_only	4	4	21	1.466516	3.748995	chr14	101819651	101819923	SINE|Alu|AluJb	-	chr14	101761861	101821098	PPP2R5C|ENST00000556068.5	+	101761861,101762904,101786017,101818026	101761920,101762970,101786183,101821098	0.809524
spleen_male_adult_37_years	chr11	65382641	65382663	65382645	-	High_confidence	33	34	69	4.818552	5.247529	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65379452	65382645	SLC25A45|ENST00000529962.5	-	65379452,65379866,65380131,65380533,65381874,65382485	65379561,65379938,65380175,65380622,65381969,65382645	0.768116
spleen_male_adult_37_years	chr10	17816381	17816409	17816381	+	RAMPAGE_only	3	3	7	0.488839	2.521641	chr10	17816252	17816714	LTR|ERVL|LTR16C	-	chr10	17809343	17911170	MRC1|ENST00000569591.2	+	17809343,17823073,17827541,17833674,17840692,17845288,17849578,17852966,17856241,17861386,17863533,17866561,17870245,17870847,17871981,17873783,17875089,17877899,17879720,17880524,17881066,17885268,17894209,17898033,17900787,17901972,17906885,17907533,17909305,17910214	17809526,17823475,17827715,17833839,17840806,17845435,17849764,17853124,17856352,17861502,17863682,17866761,17870373,17870935,17872126,17873825,17875253,17877967,17879821,17880670,17881181,17885435,17894312,17898266,17900953,17902122,17906999,17907698,17909347,17911170	1.000000
spleen_male_adult_37_years	chr22	32580127	32580161	32580160	+	RAMPAGE_only	24	28	97	6.773906	4.196195	chr22	32580186	32580275	DNA|hAT-Charlie|MER58B	+	chr22	32583299	32584204	Z82246.1|ENST00000428201.1	+	32583299,32583876	32583428,32584204	0.948454
spleen_male_adult_37_years	chr1	111128023	111128033	111128023	-	High_confidence	8	8	18	1.257014	3.690117	chr1	111127946	111128007	DNA|hAT-Charlie|Charlie7a	-	chr1	111118123	111128027	DRAM2|ENST00000461449.5	-	111118123,111118804,111119876,111120515,111126226,111127982	111118267,111118897,111119959,111120693,111126294,111128027	0.666667
spleen_male_adult_37_years	chr6	128241293	128241324	128241323	-	High_confidence	8	9	67	4.678884	4.012688	chr6	128241276	128241454	DNA|hAT-Charlie|MER5A	+	chr6	128184431	128241299	PTPRK|ENST00000368205.7	-	128184431,128218921,128240034,128241222	128184725,128219096,128240150,128241299	0.880597
spleen_male_adult_37_years	chr4	41934669	41934684	41934674	-	RAMPAGE_only	17	17	33	2.304525	3.566428	chr4	41934560	41934828	LINE|L2|L2c	+	chr4	41910833	41911486	STRG.30849.1	-	41910833	41911486	0.939394
spleen_male_adult_37_years	chr1	183590892	183590926	183590913	-	High_confidence	14	23	72	5.028054	5.286589	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.888889
spleen_male_adult_37_years	chr10	89888929	89888962	89888929	+	High_confidence	6	8	16	1.117345	3.750000	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89888956	89914903	STRG.71033.1	+	89888956,89914635	89889149,89914903	0.687500
spleen_male_adult_37_years	chr2	217842167	217842201	217842167	-	High_confidence	5	5	16	1.117345	3.250000	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.750000
spleen_male_adult_37_years	chr8	85378112	85378113	85378112	-	High_confidence	1760	1842	1857	129.681895	4.597283	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.977383
spleen_male_adult_37_years	chr11	60182437	60182445	60182437	-	High_confidence	4	4	16	1.117345	2.840224	chr11	60182383	60182456	SINE|MIR|MIRb	-	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.812500
spleen_male_adult_37_years	chr19	11321325	11321326	11321325	-	High_confidence	89	105	111	7.751583	5.299789	chr19	11321200	11321519	LTR|ERVL-MaLR|THE1D	-	chr19	11300866	11321323	AC011472.2|ENST00000585801.1	-	11300866,11306678,11321293	11301236,11306824,11321323	0.702703
spleen_male_adult_37_years	chr5	177431710	177431732	177431710	+	High_confidence	19	19	70	4.888386	4.212783	chr5	177431745	177431876	SINE|MIR|MIRb	+	chr5	177431710	177442064	GRK6|ENST00000515666.5	+	177431710,177432232,177432705,177433146,177433346,177433535,177433913,177434901,177435031,177436072,177436392,177440699,177440918,177441736	177432107,177432310,177432806,177433239,177433410,177433676,177434104,177434939,177435121,177436281,177436530,177440837,177441053,177442064	0.957143
spleen_male_adult_37_years	chr9	39809843	39809865	39809852	-	High_confidence	5	5	26	1.815686	3.457797	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807380	39810058	GLIDR|ENST00000618092.2	-	39807380,39809730	39809633,39810058	0.538462
spleen_male_adult_37_years	chr2	96895132	96895133	96895132	-	High_confidence	19	19	25	1.745852	3.762267	chr2	96894981	96895398	LINE|L1|L1MC5a	-	chr2	96876025	96895142	FAM178B|ENST00000470789.5	-	96876025,96877889,96878415,96893925,96895060	96876308,96878042,96878493,96894051,96895142	0.840000
spleen_male_adult_37_years	chr1	23627338	23627387	23627373	+	High_confidence	2	2	9	0.628507	3.169925	chr1	23627331	23627755	LINE|L2|L2a	+	chr1	23627333	23640566	MDS2|NR_027042.1	+	23627333,23627780,23628506,23629480,23639108,23639679,23640388	23627537,23627998,23628597,23629557,23639251,23639795,23640566	0.666667
spleen_male_adult_37_years	chr9	121281850	121281892	121281891	+	RAMPAGE_only	48	48	115	8.030920	5.842226	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.747826
spleen_male_adult_37_years	chr6	11728513	11728546	11728513	-	High_confidence	8	8	20	1.396682	3.721612	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.900000
spleen_male_adult_37_years	chr6	11728439	11728453	11728439	-	High_confidence	2	2	10	0.698341	2.947703	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.500000
spleen_male_adult_37_years	chr7	143279936	143279972	143279971	+	High_confidence	4	4	14	0.977677	3.093069	chr7	143279918	143280020	SINE|MIR|MIRc	+	chr7	143279956	143287296	TMEM139|ENST00000409102.5	+	143279956,143285940,143286423	143280047,143286202,143287296	0.642857
spleen_male_adult_37_years	chr19	48868595	48868617	48868595	-	High_confidence	172	175	640	44.693814	7.216467	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.998437
spleen_male_adult_37_years	chr22	39066300	39066335	39066326	+	High_confidence	26	38	114	7.961086	5.747744	chr22	39066093	39066470	LTR|ERV1|LTR7	-	chr22	39066285	39071204	STRG.116073.1	+	39066285,39068509	39066358,39071204	0.903509
spleen_male_adult_37_years	chr3	112498018	112498023	112498022	-	RAMPAGE_only	19	19	29	2.025188	4.137538	chr3	112498003	112498161	SINE|tRNA-RTE|MamSINE1	+	chr3	112466107	112499358	BTLA|ENST00000383680.4	-	112466107,112469757,112479454,112499270	112466383,112469804,112479769,112499358	0.827586
spleen_male_adult_37_years	chr19	10555127	10555128	10555127	-	RAMPAGE_only	10	10	12	0.838009	2.625815	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	1.000000
spleen_male_adult_37_years	chrX	48683361	48683363	48683362	+	High_confidence	231	479	480	33.520361	5.578148	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.943750
spleen_male_adult_37_years	chr2	218125279	218125315	218125306	+	High_confidence	16	16	136	9.497436	5.343604	chr2	218123953	218125352	LINE|L1|L1PBb	-	chr2	218125289	218137253	CXCR2|NM_001168298.1	+	218125289,218126290,218129313,218134776	218125359,218126353,218129365,218137253	0.889706
spleen_male_adult_37_years	chr17	43389200	43389203	43389200	-	High_confidence	3	3	8	0.558673	2.750000	chr17	43388856	43389213	LINE|L2|L2c	+	chr17	43385862	43389199	LINC00910|ENST00000586231.1	-	43385862,43388504	43388057,43389199	0.750000
spleen_male_adult_37_years	chr2	3536822	3536887	3536886	-	High_confidence	5	5	26	1.815686	4.315824	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.615385
spleen_male_adult_37_years	chr12	10553364	10553365	10553364	+	High_confidence	90	92	98	6.843740	5.273242	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.561224
spleen_male_adult_37_years	chr19	39335671	39335678	39335672	-	High_confidence	10	13	24	1.676018	3.855389	chr19	39335628	39335746	DNA|hAT-Tip100|MER91A	-	chr19	39328358	39335531	GMFG|ENST00000596583.5	-	39328358,39328999,39329547,39333076,39335434	39328548,39329073,39329626,39333126,39335531	0.958333
spleen_male_adult_37_years	chr2	217277924	217277980	217277924	+	High_confidence	21	23	111	7.751583	4.644883	chr2	217277834	217277987	SINE|MIR|MIR3	-	chr2	217277944	217336095	STRG.19907.1	+	217277944,217282714,217296631,217302685,217335957	217278272,217282809,217296770,217302785,217336095	0.972973
spleen_male_adult_37_years	chr3	180870516	180870521	180870518	-	High_confidence	23	28	43	3.002866	4.364602	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180749237	180870507	STRG.28530.1	-	180749237,180781983,180847506,180870046	180751410,180782124,180847624,180870507	0.976744
spleen_male_adult_37_years	chr5	140700445	140700452	140700445	+	High_confidence	512	626	1056	73.744793	4.886170	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.988636
spleen_male_adult_37_years	chr2	230925215	230925245	230925215	-	High_confidence	3	3	15	1.047511	3.235926	chr2	230925193	230925329	SINE|MIR|MIR3	+	chr2	230907317	230925226	GPR55|ENST00000444078.5	-	230907317,230909621,230925167	230908310,230911096,230925226	0.866667
spleen_male_adult_54_years	chr3	50312875	50312934	50312933	-	High_confidence	22	23	105	7.068381	5.055128	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50310882	50312914	STRG.28331.10	-	50310882,50311279	50311242,50312914	0.961905
spleen_male_adult_54_years	chr1	222737198	222737222	222737215	+	High_confidence	21	40	86	5.789341	5.556105	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737215	222750805	FAM177B|ENST00000391880.6	+	222737215,222737877,222746530,222747014,222748960,222749920	222737322,222738021,222746719,222747081,222749562,222750805	0.744186
spleen_male_adult_54_years	chr3	28291794	28291848	28291847	+	High_confidence	60	64	91	6.125930	5.449765	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.703297
spleen_male_adult_54_years	chr5	140655854	140655987	140655986	+	RAMPAGE_only	25	27	101	6.799109	4.988484	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.960396
spleen_male_adult_54_years	chr1	32637312	32637313	32637312	-	RAMPAGE_only	4	4	7	0.471225	2.584963	chr1	32637281	32637581	SINE|Alu|AluSx3	+	chr1	32621829	32634061	ZBTB8OS|ENST00000498691.5	-	32621829,32627507,32631826,32632207,32633644,32633950	32621948,32627544,32631879,32632345,32633727,32634061	0.714286
spleen_male_adult_54_years	chr14	81427421	81427467	81427441	-	High_confidence	16	18	112	7.539606	5.380331	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.919643
spleen_male_adult_54_years	chr12	21818159	21818180	21818159	-	RAMPAGE_only	3	3	8	0.538543	2.521641	chr12	21817882	21818136	LINE|L1|L1PA8A	-	chr12	21797388	21852687	STRG.97859.1	-	21797388,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367	21801181,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852687	0.875000
spleen_male_adult_54_years	chr9	121313996	121314021	121314002	+	RAMPAGE_only	30	30	70	4.712254	4.380711	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.971429
spleen_male_adult_54_years	chr1	22635044	22635063	22635044	+	RAMPAGE_only	3	3	8	0.538543	2.750000	chr1	22634004	22635725	LTR|ERV1|MER52A	-	chr1	22636431	22639608	STRG.1119.1	+	22636431,22637609,22638832,22639311	22636702,22637779,22639215,22639608	1.000000
spleen_male_adult_54_years	chr1	156252925	156252926	156252925	-	High_confidence	7	7	11	0.740497	3.095795	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.545455
spleen_male_adult_54_years	chr6	6587361	6587362	6587361	-	RAMPAGE_only	70	76	87	5.856658	5.930950	chr6	6587337	6587525	DNA|hAT-Charlie|MER5A	-	chr6	6562097	6569662	STRG.52411.1	-	6562097,6569417	6564388,6569662	0.505747
spleen_male_adult_54_years	chr19	7642243	7642316	7642315	+	High_confidence	11	15	34	2.288809	4.312036	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.823529
spleen_male_adult_54_years	chr10	17213047	17213055	17213053	-	High_confidence	2	3	8	0.538543	2.807355	chr10	17212633	17213334	LTR|ERV1|LTR78	+	chr10	17152723	17213368	STRG.83865.1	-	17152723,17154676,17157440,17159145,17160304,17161482,17162165,17168840,17169309,17174550,17201570,17212969	17153636,17154734,17157784,17159229,17160374,17161548,17162237,17168917,17169539,17174660,17201808,17213368	0.500000
spleen_male_adult_54_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	6	6	7	0.471225	2.584963	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.714286
spleen_male_adult_54_years	chr1	204870075	204870100	204870099	+	High_confidence	11	14	38	2.558081	4.540402	chr1	204870144	204870213	LINE|CR1|Plat_L3	+	chr1	204870603	204945032	NFASC|ENST00000493914.5	+	204870603,204920631,204944225,204944736	204870700,204920740,204944406,204945032	0.684211
spleen_male_adult_54_years	chr16	85981693	85981704	85981703	+	High_confidence	4	6	11	0.740497	2.921928	chr16	85981548	85981870	SINE|Alu|AluJo	+	chr16	85981749	85984881	AC092723.1|ENST00000599411.2	+	85981749,85984371	85981871,85984881	0.909091
spleen_male_adult_54_years	chr3	50312762	50312801	50312800	-	High_confidence	3	3	10	0.673179	3.121928	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50310882	50312914	STRG.28331.10	-	50310882,50311279	50311242,50312914	0.900000
spleen_male_adult_54_years	chr3	129559620	129559621	129559620	-	High_confidence	16	16	20	1.346358	3.684184	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	0.900000
spleen_male_adult_54_years	chr19	48727420	48727421	48727420	-	RAMPAGE_only	6	6	8	0.538543	2.521641	chr19	48727220	48727380	SINE|MIR|MIR3	-	chr19	48720584	48740713	RASIP1|NM_017805.2	-	48720584,48721853,48724336,48724716,48726784,48727006,48727392,48728936,48735195,48738959,48740145,48740520	48720997,48722001,48724509,48724960,48726888,48727158,48727430,48729590,48735551,48739645,48740286,48740713	0.875000
spleen_male_adult_54_years	chr19	54617322	54617348	54617347	+	High_confidence	15	19	36	2.423445	4.571861	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.833333
spleen_male_adult_54_years	chr19	41797152	41797174	41797152	+	High_confidence	53	54	100	6.731791	5.072641	chr19	41797124	41797442	LINE|L2|L2a	-	chr19	41797152	41797941	CEACAM3|ENST00000596544.1	+	41797152,41797588	41797273,41797941	0.950000
spleen_male_adult_54_years	chr13	99496757	99496795	99496779	-	High_confidence	3	3	15	1.009769	3.235926	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.533333
spleen_male_adult_54_years	chr1	147173232	147173256	147173232	+	High_confidence	1	1	7	0.471225	2.584963	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.857143
spleen_male_adult_54_years	chr19	46731721	46731725	46731721	-	High_confidence	9	9	18	1.211722	3.263933	chr19	46731643	46732623	LINE|L2|L2a	+	chr19	46728684	46731788	STRN4|ENST00000596016.5	-	46728684,46730731,46731467	46728777,46730873,46731788	0.888889
spleen_male_adult_54_years	chr17	64077464	64077487	64077486	-	RAMPAGE_only	14	16	41	2.760034	4.839776	chr17	64077306	64077742	LINE|L1|L1ME3A	-	chr17	64068236	64080474	ERN1|ENST00000577567.5	-	64068236,64071980,64075174,64079661,64080400	64068291,64072103,64075247,64079734,64080474	0.682927
spleen_male_adult_54_years	chr7	43762654	43762670	43762664	+	RAMPAGE_only	30	31	140	9.424508	5.774358	chr7	43762606	43762916	SINE|Alu|AluSc	-	chr7	43758686	43807342	BLVRA|ENST00000402924.5	+	43758686,43760016,43771137,43787903,43791248,43792714,43800464,43803675,43806976	43758734,43760110,43771170,43788025,43791368,43792812,43800572,43803847,43807342	0.928571
spleen_male_adult_54_years	chr19	12800944	12800954	12800944	-	High_confidence	3	3	8	0.538543	2.521641	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.875000
spleen_male_adult_54_years	chr17	81560867	81560904	81560903	-	High_confidence	4	4	11	0.740497	2.913977	chr17	81560717	81560992	LINE|L1|L1M5	-	chr17	81559013	81560889	NPLOC4|ENST00000574964.1	-	81559013,81560720	81559416,81560889	0.545455
spleen_male_adult_54_years	chr10	35449689	35449725	35449689	+	RAMPAGE_only	29	29	125	8.414739	5.855824	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.512000
spleen_male_adult_54_years	chr12	50923951	50923980	50923971	+	High_confidence	21	22	85	5.722023	5.275622	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50924004	50929955	METTL7A|ENST00000550502.1	+	50924004,50925036,50929913	50924080,50925536,50929955	0.623529
spleen_male_adult_54_years	chr19	38640552	38640562	38640561	+	RAMPAGE_only	5	5	9	0.605861	2.750000	chr19	38640592	38640739	SINE|MIR|MIR	+	chr19	38647615	38730532	ACTN4|NM_004924.5	+	38647615,38700599,38701001,38704933,38706043,38708116,38709394,38710256,38714468,38717085,38717926,38721537,38723613,38723936,38724156,38724430,38725723,38726956,38727945,38728995,38729273	38647907,38700714,38701121,38705020,38706131,38708195,38709476,38710342,38714561,38717316,38718074,38721688,38723722,38724077,38724339,38724565,38725903,38727103,38728026,38729154,38730532	0.888889
spleen_male_adult_54_years	chr8	143039233	143039267	143039266	+	High_confidence	7	7	16	1.077087	3.240224	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.875000
spleen_male_adult_54_years	chr19	48242542	48242543	48242542	-	RAMPAGE_only	7	7	9	0.605861	2.725481	chr19	48242449	48242810	LINE|L1|L1MB8	-	chr19	48208085	48241063	CARD8|NR_033679.1	-	48208085,48215339,48218870,48221729,48230437,48230776,48231659,48234402,48238382,48240961	48211975,48215384,48219012,48221855,48230700,48231006,48231810,48234543,48238532,48241063	0.777778
spleen_male_adult_54_years	chr16	15798664	15798670	15798664	-	RAMPAGE_only	9	11	17	1.144405	3.452820	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.823529
spleen_male_adult_54_years	chr5	150532863	150532884	150532863	+	RAMPAGE_only	3	4	9	0.605861	3.169925	chr5	150532821	150532874	DNA|hAT-Tip100|MER45A	+	chr5	150508111	150558211	NDST1|ENST00000261797.6	+	150508111,150520867,150527803,150532944,150534866,150535699,150539227,150540081,150541569,150542847,150545311,150548217,150549677,150551752,150553212	150508226,150521767,150528298,150533032,150535021,150535885,150539356,150540264,150541666,150542971,150545486,150548388,150549787,150551855,150558211	0.888889
spleen_male_adult_54_years	chr21	33931121	33931167	33931121	+	High_confidence	5	5	27	1.817584	3.403074	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931121	33938372	LINC00649|NR_134559.1	+	33931121,33938224	33931742,33938372	0.888889
spleen_male_adult_54_years	chr5	70401416	70401505	70401502	+	RAMPAGE_only	10	10	80	5.385433	5.077130	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.900000
spleen_male_adult_54_years	chr9	123179220	123179221	123179220	-	RAMPAGE_only	9	9	9	0.605861	2.947703	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	1.000000
spleen_male_adult_54_years	chr3	9792205	9792226	9792225	-	High_confidence	5	5	10	0.673179	2.921928	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.500000
spleen_male_adult_54_years	chr14	50756867	50757082	50756973	-	RAMPAGE_only	12	12	89	5.991294	4.912202	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.921348
spleen_male_adult_54_years	chr14	95516119	95516123	95516122	+	High_confidence	19	42	71	4.779572	5.338678	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.943662
spleen_male_adult_54_years	chr17	64342092	64342114	64342092	-	RAMPAGE_only	6	6	10	0.673179	2.725481	chr17	64341867	64342175	SINE|Alu|AluSz	+	chr17	64319414	64390878	PECAM1|NM_000442.4	-	64319414,64329699,64341633,64348259,64350379,64352389,64353490,64354932,64356110,64360139,64363148,64369749,64375050,64377823,64390488,64390601	64323845,64329722,64341690,64348322,64350433,64352463,64353518,64355040,64356398,64360415,64363397,64370025,64375356,64378117,64390515,64390878	0.500000
spleen_male_adult_54_years	chr11	65639829	65639862	65639861	+	High_confidence	8	8	16	1.077087	3.773557	chr11	65639882	65640011	SINE|MIR|MIRc	+	chr11	65639865	65650880	SIPA1|ENST00000527525.5	+	65639865,65640830,65642249,65642462,65644954,65645853,65646220,65646455,65646969,65647383,65649261,65649560,65649756,65649949,65650137,65650400,65650568	65640021,65641600,65642377,65642639,65645129,65645957,65646378,65646663,65647065,65647658,65649480,65649672,65649865,65650051,65650192,65650479,65650880	0.812500
spleen_male_adult_54_years	chr5	170267210	170267296	170267210	-	High_confidence	12	14	137	9.222554	5.659296	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	STRG.51019.4	-	170248299,170250729,170252433,170253118,170256525,170258036,170262841,170262966,170266807	170248819,170250885,170252511,170253213,170256575,170262742,170262861,170262992,170267296	1.000000
spleen_male_adult_54_years	chr3	134597796	134597837	134597825	+	High_confidence	6	10	63	4.241029	5.374105	chr3	134597473	134597869	LTR|ERVL|ERV3-16A3_LTR	+	chr3	134597823	134628104	EPHB1|ENST00000472904.5	+	134597823,134615183,134627939	134597984,134615438,134628104	0.698413
spleen_male_adult_54_years	chr21	41426068	41426090	41426089	+	High_confidence	3	5	11	0.740497	2.721928	chr21	41426026	41426113	DNA|hAT-Charlie|MER5A	-	chr21	41426030	41432147	MX1|ENST00000419044.5	+	41426030,41427205,41427754,41430532,41432049	41426161,41427304,41427866,41430608,41432147	0.818182
spleen_male_adult_54_years	chr14	85934677	85934716	85934700	+	High_confidence	18	20	95	6.395202	5.431382	chr14	85934517	85934812	LTR|ERV1|LTR12F	+	chr14	85934656	85937306	STRG.112122.1	+	85934656	85937306	0.610526
spleen_male_adult_54_years	chr1	1721622	1721637	1721636	-	High_confidence	26	28	44	2.961988	5.033184	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.840909
spleen_male_adult_54_years	chr7	107041394	107041431	107041430	+	RAMPAGE_only	2	2	7	0.471225	2.584963	chr7	107041280	107041502	LTR|ERVL-MaLR|MLT1J	+	chr7	107044648	107161811	PRKAR2B|ENST00000265717.4	+	107044648,107070280,107121951,107128211,107140846,107146307,107150921,107153176,107156983,107157185,107159448	107045214,107070316,107122004,107128295,107140953,107146461,107151023,107153251,107157049,107157324,107161811	0.571429
spleen_male_adult_54_years	chr19	1177786	1177808	1177786	-	RAMPAGE_only	2	2	7	0.471225	2.521641	chr19	1177653	1177788	SINE|MIR|MIR	-	chr19	1107633	1174283	SBNO2|NM_014963.2	-	1107633,1108778,1109134,1109291,1109505,1109682,1110744,1111018,1111505,1111995,1112188,1112401,1112817,1113534,1114230,1116020,1116828,1117322,1119010,1119515,1119905,1122138,1122467,1122657,1122893,1123533,1123941,1127603,1147308,1149368,1154183,1174171	1108704,1108969,1109211,1109423,1109598,1109777,1110888,1111093,1111614,1112067,1112301,1112537,1112949,1113704,1114422,1116103,1116926,1117499,1119164,1119621,1120023,1122282,1122558,1122791,1123045,1123639,1124022,1127765,1147420,1149442,1154402,1174283	0.857143
spleen_male_adult_54_years	chr8	143558019	143558020	143558019	+	High_confidence	34	35	35	2.356127	4.616875	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.742857
spleen_male_adult_54_years	chr15	93863033	93863066	93863065	+	High_confidence	165	168	500	33.658957	7.475131	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.658000
spleen_male_adult_54_years	chr5	56160917	56160940	56160917	-	RAMPAGE_only	2	2	12	0.807815	3.584963	chr5	56160851	56161074	SINE|MIR|MIR	+	chr5	56099677	56233359	ANKRD55|ENST00000341048.8	-	56099677,56102493,56111117,56116614,56126921,56143800,56159832,56170693,56176151,56183511,56232855,56233240	56100304,56102586,56111782,56116782,56127106,56143929,56159893,56170803,56176282,56183634,56232946,56233359	0.750000
spleen_male_adult_54_years	chr6	113873326	113873347	113873326	-	High_confidence	3	3	12	0.807815	3.277613	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.916667
spleen_male_adult_54_years	chr1	89127431	89127432	89127431	-	High_confidence	380	382	389	26.186668	5.835407	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89126248	89127413	STRG.5309.5	-	89126248	89127413	0.966581
spleen_male_adult_54_years	chr14	103931833	103931840	103931833	+	RAMPAGE_only	6	7	14	0.942451	3.378783	chr14	103931646	103932201	LTR|ERVL-MaLR|MLT1E2	+	chr14	103928816	103965481	TDRD9|ENST00000496087.5	+	103928816,103945405,103955663,103963078,103965332	103928923,103945525,103955770,103963176,103965481	0.571429
spleen_male_adult_54_years	chr11	64744437	64744438	64744437	-	High_confidence	7	7	8	0.538543	2.807355	chr11	64744414	64744498	SINE|MIR|MIRc	+	chr11	64740867	64744589	RASGRP2|ENST00000394430.5	-	64740867,64741438,64742009,64742793	64741079,64741501,64742112,64744589	0.875000
spleen_male_adult_54_years	chr1	78635141	78635148	78635147	+	RAMPAGE_only	3	5	10	0.673179	2.503258	chr1	78635082	78635237	DNA|hAT-Charlie|Charlie1a	+	chr1	78629634	78635983	IFI44L|ENST00000474002.1	+	78629634,78635336	78629915,78635983	0.800000
spleen_male_adult_54_years	chr11	73270123	73270124	73270123	+	High_confidence	4	4	7	0.471225	2.584963	chr11	73270078	73270271	SINE|MIR|MIRc	-	chr11	73269893	73297805	P2RY6|ENST00000393591.5	+	73269893,73272306,73295729,73296484	73270155,73272466,73295815,73297805	0.857143
spleen_male_adult_54_years	chr9	127906577	127906616	127906615	-	High_confidence	17	17	81	5.452751	5.406821	chr9	127906602	127906670	SINE|MIR|MIRc	-	chr9	127885325	127906775	STRG.82667.6	-	127885325,127887483,127890655,127894511,127896241,127905206,127905934	127886788,127887591,127891043,127894691,127896332,127905302,127906775	0.962963
spleen_male_adult_54_years	chr11	287872	287932	287872	+	High_confidence	13	19	77	5.183479	5.789450	chr11	287740	288214	LINE|L2|L2a	-	chr11	288037	288987	AC136475.3|ENST00000534742.1	+	288037,288949	288811,288987	0.987013
spleen_male_adult_54_years	chr19	571725	571755	571754	-	High_confidence	6	7	14	0.942451	3.392747	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.857143
spleen_male_adult_54_years	chr9	101585871	101585892	101585871	-	RAMPAGE_only	7	7	17	1.144405	3.875000	chr9	101584953	101586373	LINE|L2|L2a	+	chr9	101569351	101738580	GRIN3A|NM_133445.2	-	101569351,101577767,101579195,101613375,101623317,101628255,101670059,101686595,101737280	101573513,101577844,101579360,101613527,101623433,101628401,101671107,101687200,101738580	0.588235
spleen_male_adult_54_years	chr14	101120839	101120886	101120885	+	High_confidence	3	4	17	1.144405	3.577820	chr14	101120596	101120905	LTR|ERVL-MaLR|MLT1J2	-	chr14	101120855	101123542	LINC02285|ENST00000557121.1	+	101120855,101122888	101121144,101123542	0.882353
spleen_male_adult_54_years	chr21	29121989	29121993	29121989	+	High_confidence	12	12	24	1.615630	3.882045	chr21	29121887	29122110	DNA|hAT-Charlie|Charlie29a	+	chr21	29122054	29175029	MAP3K7CL|ENST00000460883.5	+	29122054,29149188,29159940,29174711	29122213,29149250,29160056,29175029	0.708333
spleen_male_adult_54_years	chr1	3831056	3831057	3831056	-	High_confidence	5	5	7	0.471225	2.521641	chr1	3830948	3831012	LINE|L2|L2a	-	chr1	3829691	3831224	CEP104|ENST00000495701.1	-	3829691,3831045	3829997,3831224	0.571429
spleen_male_adult_54_years	chr10	133559136	133559137	133559136	-	RAMPAGE_only	8	8	8	0.538543	2.750000	chr10	133559108	133559272	DNA|hAT-Tip100|MER45A	+	chr10	133553900	133565583	SYCE1|ENST00000479535.2	-	133553900,133555350,133555596,133555779,133555980,133556758,133557066,133557863,133558166,133558876,133565456	133554328,133555438,133555707,133555903,133556047,133556822,133557156,133557918,133558214,133560153,133565583	0.750000
spleen_male_adult_54_years	chr20	48930325	48930326	48930325	+	RAMPAGE_only	8	8	9	0.605861	2.750000	chr20	48930056	48930374	LTR|ERVL-MaLR|MSTD	-	chr20	48921889	49036693	ARFGEF2|ENST00000371917.4	+	48921889,48941198,48941863,48951322,48952704,48953555,48963829,48965871,48969146,48971119,48972325,48973144,48974765,48976015,48984728,48985407,48988303,48988490,48989284,48989555,48991039,48994450,48995782,48998192,48998335,49005069,49010231,49011923,49013563,49013830,49016279,49017248,49017495,49018883,49023050,49025312,49028529,49032048,49033022	48922010,48941229,48941987,48951469,48952884,48953790,48963898,48966023,48969277,48971354,48972425,48973284,48974874,48976199,48984840,48985613,48988388,48988662,48989436,48989684,48991198,48994598,48995882,48998233,48998505,49005221,49010404,49012084,49013694,49013960,49016415,49017387,49017550,49018998,49023181,49025481,49028668,49032166,49036693	0.555556
spleen_male_adult_54_years	chr7	85106871	85106876	85106871	-	High_confidence	6	7	11	0.740497	2.921928	chr7	85106637	85107002	LTR|ERVL-MaLR|THE1D	-	chr7	84995552	85106856	STRG.65231.4	-	84995552,85006801,85012781,85015058,85018251,85020232,85022390,85036888,85040672,85042170,85055716,85065423,85068190,85072961,85081516,85097804,85106720	84999865,85006941,85012846,85015216,85018293,85020321,85022613,85037033,85040742,85042285,85055859,85065552,85068284,85073081,85081579,85097965,85106856	0.727273
spleen_male_adult_54_years	chr9	128137392	128137423	128137392	+	RAMPAGE_only	2	5	16	1.077087	3.577820	chr9	128137414	128137471	LINE|L2|L2b	+	chr9	128149429	128153455	LCN2|NM_005564.4	+	128149429,128150237,128151637,128151905,128152182,128153099,128153310	128149663,128150374,128151717,128152025,128152284,128153126,128153455	0.687500
spleen_male_adult_54_years	chr5	77088087	77088108	77088097	+	High_confidence	3	3	15	1.009769	3.324863	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.866667
spleen_male_adult_54_years	chr2	24887184	24887185	24887184	-	High_confidence	75	77	92	6.193248	5.416059	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24840953	24887169	STRG.14146.5	-	24840953,24841555,24842253,24872569,24887092	24841386,24841667,24842384,24872719,24887169	0.869565
spleen_male_adult_54_years	chr1	89058459	89058492	89058459	-	RAMPAGE_only	3	3	9	0.605861	2.725481	chr1	89058278	89058493	DNA|hAT-Charlie|MER58A	-	chr1	89052303	89065360	GBP1|NM_002053.2	-	89052303,89054681,89055112,89056015,89056853,89057991,89058840,89059316,89060196,89063044,89065159	89053468,89054875,89055215,89056228,89057134,89058234,89059043,89059426,89060324,89063253,89065360	1.000000
spleen_male_adult_54_years	chr11	110247948	110247949	110247948	-	RAMPAGE_only	6	6	6	0.403907	2.584963	chr11	110247890	110248238	LINE|L1|L1PB2	+	chr11	110195589	110296504	RDX|ENST00000646663.1	-	110195589,110199580,110200277,110231872,110233236,110236098,110237491,110247702,110253945,110255288,110257766,110258105,110263959,110264778,110272535,110279680,110296466	110196165,110199678,110200386,110232033,110233479,110236191,110237652,110247833,110254109,110255385,110257913,110258189,110264234,110264874,110272619,110279756,110296504	1.000000
spleen_male_adult_54_years	chr5	34244753	34244779	34244753	-	High_confidence	5	5	17	1.144405	3.454822	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.764706
spleen_male_adult_54_years	chr10	20002839	20002843	20002839	+	RAMPAGE_only	12	12	20	1.346358	3.826875	chr10	20002558	20002860	LINE|L2|L2c	-	chr10	20043319	20280357	PLXDC2|ENST00000377238.2	+	20043319,20046868,20068169,20143294,20147783,20164467,20176998,20177327,20211668,20217425,20219063,20245344,20279702	20043418,20047015,20068239,20143417,20147902,20164567,20177094,20177409,20211729,20217576,20219102,20245505,20280357	0.850000
spleen_male_adult_54_years	chr11	111097329	111097352	111097351	-	High_confidence	6	6	23	1.548312	3.553763	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.826087
spleen_male_adult_54_years	chr6	53621268	53621291	53621268	+	RAMPAGE_only	4	4	16	1.077087	3.189898	chr6	53621183	53621472	LINE|L1|L1M6	+	chr6	53628379	53631394	LINC01564|NR_125841.1	+	53628379,53628574,53631012	53628446,53628691,53631394	0.625000
spleen_male_adult_54_years	chr16	81664269	81664298	81664292	+	RAMPAGE_only	4	4	16	1.077087	3.625000	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	1.000000
spleen_male_adult_54_years	chr6	53621338	53621355	53621338	+	RAMPAGE_only	2	2	6	0.403907	2.584963	chr6	53621183	53621472	LINE|L1|L1M6	+	chr6	53628379	53631394	LINC01564|NR_125841.1	+	53628379,53628574,53631012	53628446,53628691,53631394	0.666667
spleen_male_adult_54_years	chr10	102449836	102449845	102449836	+	High_confidence	4	4	13	0.875133	3.251629	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.769231
spleen_male_adult_54_years	chr2	64932603	64932620	64932619	-	High_confidence	7	7	13	0.875133	2.918296	chr2	64932619	64932698	DNA|hAT-Tip100|MER91C	+	chr2	64901839	64932447	LOC400958|NR_036586.1	-	64901839,64904990,64932344	64904620,64905135,64932447	0.692308
spleen_male_adult_54_years	chr2	233357066	233357098	233357066	+	RAMPAGE_only	31	33	129	8.684011	5.866712	chr2	233356905	233357200	LTR|ERVL|LTR33A_	-	chr2	233354571	233392399	DGKD|ENST00000442524.4	+	233354571,233388256,233390402,233392069	233354674,233388367,233390483,233392399	0.534884
spleen_male_adult_54_years	chr19	17197828	17197857	17197856	+	High_confidence	18	18	32	2.154173	4.262199	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	1.000000
spleen_male_adult_54_years	chr1	6487896	6487914	6487913	-	RAMPAGE_only	8	8	18	1.211722	3.852169	chr1	6487489	6487914	LINE|L2|L2a	+	chr1	6466091	6485954	PLEKHG5|NM_001042665.1	-	6466091,6467824,6469041,6469334,6469543,6470235,6470505,6470734,6470989,6471487,6471757,6472526,6472985,6473250,6474012,6474450,6475046,6475461,6475930,6477528,6485835	6467572,6468586,6469241,6469450,6469676,6470355,6470643,6470884,6471100,6471637,6471808,6472622,6473174,6473454,6474164,6474587,6475138,6475522,6476036,6477658,6485954	0.666667
spleen_male_adult_54_years	chr9	68975832	68975855	68975854	-	High_confidence	20	23	78	5.250797	5.105414	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.602564
spleen_male_adult_54_years	chr6	88442834	88442928	88442927	-	High_confidence	32	34	101	6.799109	5.825152	chr6	88442599	88443120	LTR|ERVL-MaLR|MLT1F	-	chr6	88441727	88442920	STRG.56158.5	-	88441727,88442841	88442326,88442920	0.673267
spleen_male_adult_54_years	chr3	37987993	37987994	37987993	+	High_confidence	10	10	13	0.875133	3.418296	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.846154
spleen_male_adult_54_years	chr9	340308	340309	340308	+	RAMPAGE_only	8	8	12	0.807815	3.084963	chr9	340339	340643	SINE|Alu|AluSz6	+	chr9	360226	465241	STRG.77076.8	+	360226,370229,371427,372184,376209,376976,379770,382512,386330,390470,396784,399145,404917,406929,414781,418067,420400,420948,422047,426884,428361,429701,432165,434782,439244,441285,441874,443426,446369,449783,452010,463516,464158	368300,370300,371566,372286,376305,377211,379935,382685,386426,390566,396934,399259,405073,407069,414951,418207,420583,421078,422135,426981,428496,429854,433975,434975,439388,441417,442009,443516,446606,449927,452117,463687,465241	1.000000
spleen_male_adult_54_years	chr3	69237169	69237185	69237171	-	RAMPAGE_only	5	8	21	1.413676	3.681881	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.523810
spleen_male_adult_54_years	chr11	10450119	10450176	10450156	+	High_confidence	5	5	29	1.952219	3.961429	chr11	10449604	10450192	LINE|L2|L2	-	chr11	10450320	10482168	AMPD3|ENST00000529835.6	+	10450320,10461514,10482062	10450515,10461740,10482168	0.586207
spleen_male_adult_54_years	chr11	108224064	108224075	108224074	+	High_confidence	41	42	69	4.644936	4.513372	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.855072
spleen_male_adult_54_years	chr12	8681676	8681677	8681676	+	High_confidence	19	19	22	1.480994	4.186704	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.636364
spleen_male_adult_54_years	chr9	63779358	63779359	63779358	-	RAMPAGE_only	10	10	11	0.740497	2.646439	chr9	63776735	63779781	LINE|L1|L1PBa	+	chr9	63775891	63776143	PTGER4P3|ENST00000458150.2	-	63775891	63776143	0.909091
spleen_male_adult_54_years	chr19	54218386	54218392	54218391	-	High_confidence	6	6	11	0.740497	3.121928	chr19	54218103	54218345	LINE|L2|L2	-	chr19	54217095	54217698	LILRB3|ENST00000460208.1	-	54217095,54217318	54217239,54217698	0.545455
spleen_male_adult_54_years	chr8	24324975	24324976	24324975	+	High_confidence	52	68	69	4.644936	5.265782	chr8	24324695	24325068	LTR|ERVL-MaLR|MLT1H1	-	chr8	24325036	24332725	ADAM28|ENST00000521110.1	+	24325036,24326553,24329984,24331149,24332659	24325089,24326635,24330115,24331327,24332725	0.739130
spleen_male_adult_54_years	chr2	207662375	207662378	207662375	+	High_confidence	329	334	480	32.312599	5.789118	chr2	207662277	207662604	LTR|ERVL-MaLR|MLT1A1	+	chr2	207662374	207667024	LINC01857|ENST00000429730.1	+	207662374,207666680	207662522,207667024	0.918750
spleen_male_adult_54_years	chr13	30376953	30376971	30376953	-	High_confidence	25	26	82	5.520069	5.252318	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30374002	30376964	LINC00426|ENST00000416261.1	-	30374002,30375466,30376826	30374093,30375776,30376964	0.560976
spleen_male_adult_54_years	chr2	111480260	111480263	111480260	-	High_confidence	8	9	17	1.144405	2.983459	chr2	111480041	111480456	LTR|ERVL-MaLR|MLT1C	-	chr2	111429322	111480261	MIR4435-2HG|ENST00000442293.5	-	111429322,111479906,111480168	111429620,111480061,111480261	0.647059
spleen_male_adult_54_years	chr17	64764475	64764501	64764475	-	RAMPAGE_only	3	3	12	0.807815	2.918296	chr17	64764423	64764603	SINE|Alu|AluSx1	+	chr17	64749662	64762710	STRG.126387.7	-	64749662,64750593,64751806,64754004,64754420,64758241,64758528,64761915,64762354	64750008,64751601,64751956,64754164,64754654,64758379,64758626,64762047,64762710	1.000000
spleen_male_adult_54_years	chr7	45027006	45027076	45027020	+	High_confidence	11	11	44	2.961988	5.078639	chr7	45026988	45027096	SINE|MIR|MIR3	-	chr7	45027025	45076451	CCM2|ENST00000475551.5	+	45027025,45038252,45063917,45064462,45068442,45069825,45072725,45073459,45074269,45075776	45027797,45038426,45064001,45064646,45068579,45069961,45072783,45073571,45074408,45076451	0.931818
spleen_male_adult_54_years	chr1	20683044	20683070	20683069	-	RAMPAGE_only	6	7	14	0.942451	3.392747	chr1	20682984	20683054	SINE|MIR|MIR3	-	chr1	20664013	20685187	KIF17|ENST00000477167.5	-	20664013,20666213,20670420,20671937,20682652,20684808	20664762,20666331,20670488,20672196,20682884,20685187	0.785714
spleen_male_adult_54_years	chr1	175177616	175177625	175177624	-	RAMPAGE_only	8	8	15	1.009769	2.699514	chr1	175177563	175177679	SINE|MIR|MIRc	+	chr1	175156986	175166741	KIAA0040|ENST00000619513.1	-	175156986,175166561	175161146,175166741	0.666667
spleen_male_adult_54_years	chr13	51080845	51080846	51080845	-	High_confidence	9	9	9	0.605861	2.725481	chr13	51078923	51080846	LINE|L1|L1PA6	-	chr13	51016107	51080862	GUCY1B2|ENST00000532104.1	-	51016107,51016915,51020397,51024099,51025333,51026701,51029593,51034002,51048219,51062820,51065950,51080706	51016327,51017064,51020718,51024316,51025437,51026813,51029693,51034159,51048314,51062894,51066157,51080862	0.777778
spleen_male_adult_54_years	chr6	89656045	89656046	89656045	-	RAMPAGE_only	9	9	9	0.605861	3.169925	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642498	89819723	MDN1|ENST00000369393.7	-	89642498,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89706058,89707360,89708495,89710680,89712035,89712574,89713147,89714542,89715652,89716649,89718365,89718766,89719135,89722954,89723511,89725198,89727832,89728930,89730725,89732556,89738325,89740233,89743149,89743575,89745272,89745491,89747328,89749222,89749542,89750353,89751430,89753511,89754082,89756276,89758254,89758815,89761644,89762318,89771560,89772572,89774620,89776599,89780211,89781398,89785011,89787853,89789779,89790158,89793761,89794099,89794576,89803327,89819505	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89706192,89707476,89708628,89710794,89712256,89712786,89713296,89714751,89715769,89716809,89718627,89719030,89719225,89723143,89723619,89725396,89727955,89729139,89730923,89732775,89738455,89740378,89743280,89743714,89745411,89745626,89747470,89749369,89749751,89750532,89751582,89753622,89754230,89756390,89758351,89758960,89761748,89762530,89771621,89772721,89774733,89776695,89780293,89781592,89785126,89787957,89789911,89790401,89793954,89794207,89794801,89803554,89819723	1.000000
spleen_male_adult_54_years	chr9	124505470	124505507	124505506	-	High_confidence	16	16	48	3.231260	4.447865	chr9	124505450	124505579	SINE|MIR|MIRb	+	chr9	124481353	124505161	STRG.82435.4	-	124481353,124491080,124493029,124500089,124503078,124503293,124504942	124483005,124491228,124493149,124500715,124503220,124503410,124505161	0.958333
spleen_male_adult_54_years	chr3	108125043	108125048	108125047	+	High_confidence	19	23	36	2.423445	4.440351	chr3	108124858	108125222	LTR|ERVL-MaLR|THE1C	+	chr3	108125820	108138610	LINC01215|NR_110028.1	+	108125820,108135143,108136313	108125908,108135350,108138610	0.527778
spleen_male_adult_54_years	chr2	71417096	71417119	71417096	+	RAMPAGE_only	2	2	9	0.605861	2.947703	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.666667
spleen_male_adult_54_years	chr19	53123534	53123553	53123534	-	High_confidence	2	2	8	0.538543	2.500000	chr19	53123361	53123676	LINE|L2|L2a	-	chr19	53107897	53123649	ZNF415|ENST00000597748.5	-	53107897,53115209,53116312,53122661,53123500	53109908,53115307,53116433,53122743,53123649	0.875000
spleen_male_adult_54_years	chr16	4239742	4239749	4239748	-	High_confidence	22	22	34	2.288809	4.366729	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.558824
spleen_male_adult_54_years	chr16	67183466	67183467	67183466	-	High_confidence	9	9	12	0.807815	2.845351	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175682	67183941	STRG.121068.2	-	67175682,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178107,67178504,67179562,67179958,67180666,67181697,67183941	0.916667
spleen_male_adult_54_years	chr12	8567589	8567624	8567589	-	High_confidence	23	23	70	4.712254	5.393429	chr12	8567561	8568746	LTR|ERV1|MER52C	-	chr12	8534580	8567928	STRG.97129.1	-	8534580,8536089,8537114,8539216,8539854,8540760,8567493	8534809,8536205,8537266,8539306,8539947,8541055,8567928	0.628571
spleen_male_adult_54_years	chr5	178668695	178668714	178668695	-	High_confidence	3	3	9	0.605861	2.725481	chr5	178668515	178668981	LTR|ERVL-MaLR|MLT1C	-	chr5	178667084	178668321	STRG.51608.1	-	178667084	178668321	0.555556
spleen_male_adult_54_years	chr17	47067487	47067513	47067498	-	High_confidence	205	222	760	51.161614	5.871190	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.957895
spleen_male_adult_54_years	chr12	29209020	29209024	29209023	+	RAMPAGE_only	25	25	54	3.635167	4.414019	chr12	29208990	29209077	LINE|L2|L2	-	chr12	29223622	29335616	FAR2|NM_018099.4	+	29223622,29270411,29293299,29297020,29307657,29309185,29311027,29311882,29316840,29321794,29332599,29333631	29223894,29270638,29293475,29297200,29307835,29309230,29311146,29311950,29317012,29321924,29332727,29335616	0.814815
spleen_male_adult_54_years	chr9	39809856	39809865	39809858	-	High_confidence	4	7	12	0.807815	2.845351	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.500000
spleen_male_adult_54_years	chr11	57426754	57426755	57426754	-	High_confidence	10	10	13	0.875133	3.418296	chr11	57426722	57426811	SINE|MIR|MIRb	-	chr11	57407405	57426752	SLC43A3|ENST00000529554.5	-	57407405,57409174,57409934,57414614,57414932,57416572,57417747,57420971,57421296,57423981,57425540,57425988,57426587	57407896,57409298,57410121,57414731,57415106,57416670,57417887,57421064,57421373,57424028,57425670,57426352,57426752	0.923077
spleen_male_adult_54_years	chr5	157107316	157107317	157107316	-	High_confidence	7	7	10	0.673179	2.646439	chr5	157107099	157107287	DNA|hAT-Charlie|MER5A	-	chr5	157106653	157107302	HAVCR2|ENST00000517358.1	-	157106653,157107045	157106962,157107302	0.800000
spleen_male_adult_54_years	chr1	248817089	248817101	248817089	-	RAMPAGE_only	4	4	11	0.740497	2.646439	chr1	248817066	248817156	SINE|MIR|MIRb	-	chr1	248810445	248825366	SH3BP5L|NM_001322462.1	-	248810445,248812988,248814448,248814710,248816533,248816821,248820402,248821146,248824752	248812370,248813162,248814610,248814877,248816662,248816884,248820912,248821261,248825366	0.545455
spleen_male_adult_54_years	chr16	27330079	27330082	27330079	+	RAMPAGE_only	3	3	7	0.471225	2.584963	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27313933	27363903	IL4R|ENST00000568746.5	+	27313933,27340185,27341069,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27314020,27340273,27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27363903	0.714286
spleen_male_adult_54_years	chr11	118241621	118241650	118241621	-	RAMPAGE_only	3	3	17	1.144405	3.750000	chr11	118241373	118241624	SINE|MIR|MIR	+	chr11	118229453	118252320	MPZL3|ENST00000446386.2	-	118229453,118233459,118235423,118240210,118252221	118229920,118233523,118235589,118240377,118252320	0.588235
spleen_male_adult_54_years	chr5	139364647	139364670	139364647	+	RAMPAGE_only	3	3	6	0.403907	2.584963	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	1.000000
spleen_male_adult_54_years	chr19	11321325	11321326	11321325	-	High_confidence	70	78	83	5.587387	4.877349	chr19	11321200	11321519	LTR|ERVL-MaLR|THE1D	-	chr19	11300866	11321323	AC011472.2|ENST00000585801.1	-	11300866,11306678,11321293	11301236,11306824,11321323	0.759036
spleen_male_adult_54_years	chr7	101217580	101217595	101217580	-	High_confidence	4	5	13	0.875133	3.546594	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
spleen_male_adult_54_years	chr12	127060613	127060614	127060613	+	High_confidence	51	54	60	4.039075	4.735546	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060993	127145786	STRG.103718.1	+	127060993,127119553,127145711	127061334,127119678,127145786	0.666667
spleen_male_adult_54_years	chr2	127387020	127387044	127387020	-	High_confidence	4	5	15	1.009769	3.182006	chr2	127386861	127387048	SINE|MIR|MIRb	+	chr2	127298436	127387932	STRG.19765.1	-	127298436,127308584,127314753,127317628,127318168,127322045,127323901,127324173,127325727,127326686,127329920,127330391,127332320,127335869,127337737,127338931,127343125,127387451	127307804,127308762,127314883,127317760,127318317,127322252,127323994,127324241,127325807,127326817,127330008,127330505,127332370,127335969,127337778,127339050,127343194,127387932	0.600000
spleen_male_adult_54_years	chr13	93455162	93455185	93455184	+	RAMPAGE_only	9	11	18	1.211722	3.051602	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226970	93830616	STRG.106984.1	+	93226970,93545262,93830153	93227616,93545421,93830616	0.944444
spleen_male_adult_54_years	chr15	77284958	77284975	77284958	-	RAMPAGE_only	3	3	10	0.673179	3.169925	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.800000
spleen_male_adult_54_years	chr5	32403115	32403116	32403115	-	RAMPAGE_only	6	6	8	0.538543	2.750000	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
spleen_male_adult_54_years	chr17	4736360	4736404	4736361	-	High_confidence	39	56	162	10.905502	3.916703	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.956790
spleen_male_adult_54_years	chr11	58770401	58770419	58770418	+	High_confidence	3	4	9	0.605861	2.947703	chr11	58770116	58770603	LTR|ERV1|HERV1_LTRc	+	chr11	58770635	58785377	STRG.92338.1	+	58770635,58785293	58770835,58785377	0.888889
spleen_male_adult_54_years	chr7	121138516	121138517	121138516	-	High_confidence	63	63	71	4.779572	4.804319	chr7	121138301	121138528	SINE|5S-Deu-L2|AmnSINE1	+	chr7	121137414	121138840	STRG.67876.1	-	121137414	121138840	0.957746
spleen_male_adult_54_years	chrX	16712861	16712959	16712958	-	High_confidence	4	4	19	1.279040	3.511085	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16608822	16712947	STRG.142718.1	-	16608822,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712334	16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712947	0.947368
spleen_male_adult_54_years	chr13	100213868	100213905	100213892	+	RAMPAGE_only	16	16	60	4.039075	5.234148	chr13	100212683	100214433	LINE|L1|L1MA3	-	chr13	100102898	100530435	PCCA|ENST00000636366.1	+	100102898,100111840,100111992,100154978,100157286,100209331,100235841,100257594,100262728,100268688,100273195,100425632,100449251,100515426,100527674,100530097	100102960,100111888,100112061,100155092,100157340,100209463,100235878,100257673,100262831,100268783,100273346,100425731,100449305,100515567,100527752,100530435	0.883333
spleen_male_adult_54_years	chr19	48232679	48232680	48232679	-	RAMPAGE_only	13	13	15	1.009769	3.182006	chr19	48232582	48232775	DNA|hAT-Charlie|MER3	-	chr19	48211151	48249826	CARD8|ENST00000519646.5	-	48211151,48215339,48218870,48221729,48230437,48230776,48231659,48232452,48234402,48238382,48240961,48249750	48211975,48215384,48219012,48221855,48230700,48231006,48231810,48232789,48234543,48238532,48241063,48249826	0.533333
spleen_male_adult_54_years	chr17	59729928	59730008	59729951	+	RAMPAGE_only	5	5	33	2.221491	4.536670	chr17	59729673	59729983	SINE|Alu|AluSq2	-	chr17	59707695	59765138	VMP1|ENST00000589823.6	+	59707695,59731420,59735337,59737452,59738836,59765051	59707748,59731522,59735473,59737543,59738947,59765138	0.575758
spleen_male_adult_54_years	chr7	6590269	6590301	6590300	+	High_confidence	2	2	8	0.538543	2.521641	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.625000
spleen_male_adult_54_years	chr2	101283247	101283248	101283247	-	RAMPAGE_only	11	11	17	1.144405	3.625000	chr2	101283134	101283407	LINE|L2|L2c	+	chr2	101276090	101308696	STRG.18929.5	-	101276090,101281858,101288972,101294013	101281097,101286177,101289055,101308696	0.941176
spleen_male_adult_54_years	chr19	20423690	20423704	20423703	-	RAMPAGE_only	5	7	13	0.875133	3.026987	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.615385
spleen_male_adult_54_years	chr7	140641459	140641460	140641459	-	High_confidence	11	11	13	0.875133	3.418296	chr7	140641382	140641679	LINE|L2|L2b	-	chr7	140601924	140641485	DENND2A|ENST00000491728.5	-	140601924,140605704,140641405	140602542,140605806,140641485	0.692308
spleen_male_adult_54_years	chr20	50267474	50267502	50267474	+	High_confidence	3	4	15	1.009769	3.467720	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.866667
spleen_male_adult_54_years	chr3	188153195	188153262	188153261	+	High_confidence	4	4	12	0.807815	2.855389	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	1.000000
spleen_male_adult_54_years	chr15	94234472	94234497	94234496	+	RAMPAGE_only	4	4	9	0.605861	3.169925	chr15	94234213	94234529	DNA|hAT-Tip100|Arthur1C	-	chr15	94231721	94480403	MCTP2|ENST00000456504.5	+	94231721,94298200,94314281,94314726,94315528,94339289,94340198,94340812,94345128,94356136,94358481,94367604,94370086,94384021,94385422,94398960,94399920,94401899,94440175,94442918,94458136,94470332,94476695,94478965	94232005,94298730,94314344,94314864,94315637,94339432,94340275,94340924,94345164,94356301,94358612,94367791,94370180,94384124,94385525,94399062,94399995,94402019,94440298,94442960,94458246,94470442,94476793,94480403	0.666667
spleen_male_adult_54_years	chr13	37091087	37091122	37091121	+	High_confidence	259	278	649	43.689326	7.139241	chr13	37090806	37091149	DNA|hAT-Charlie|Charlie17b	+	chr13	37091108	37107474	STRG.105012.1	+	37091108,37104580	37091148,37107474	0.822804
spleen_male_adult_54_years	chr8	42320595	42320623	42320595	+	High_confidence	3	3	12	0.807815	2.855389	chr8	42320403	42320611	SINE|MIR|MIRb	-	chr8	42320705	42331609	IKBKB|ENST00000519938.5	+	42320705,42322053,42322346,42325969,42329123,42330913	42321945,42322153,42322494,42326097,42329214,42331609	0.916667
spleen_male_adult_54_years	chr2	55228123	55228165	55228158	-	RAMPAGE_only	6	8	25	1.682948	4.084963	chr2	55228053	55228212	LINE|L2|L2c	+	chr2	55175648	55232158	CLHC1|ENST00000407122.5	-	55175648,55177601,55180509,55181569,55206269,55208625,55209403,55209629,55212672,55217810,55222234,55232003	55175986,55177781,55180712,55181744,55206376,55208710,55209516,55209831,55212806,55217998,55222493,55232158	0.560000
spleen_male_adult_54_years	chr4	4269594	4269614	4269609	-	High_confidence	80	86	285	19.185605	4.359382	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.957895
spleen_male_adult_54_years	chr15	69769604	69769605	69769604	+	High_confidence	26	28	32	2.154173	4.548394	chr15	69769433	69775195	LINE|L1|L1PA6	+	chr15	69769876	69770104	STRG.117035.1	+	69769876	69770104	0.562500
spleen_male_adult_54_years	chr11	71999605	71999642	71999614	+	High_confidence	36	69	166	11.174774	5.729171	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.909639
spleen_male_adult_54_years	chr14	22909560	22909561	22909560	-	RAMPAGE_only	7	7	11	0.740497	3.459432	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22905093	22905953	RBM23|ENST00000553738.5	-	22905093,22905335,22905605	22905246,22905453,22905953	0.545455
spleen_male_adult_54_years	chr12	79873262	79873267	79873262	-	High_confidence	7	8	18	1.211722	3.641604	chr12	79873243	79873519	DNA|hAT-Charlie|Charlie1a	+	chr12	79828370	79872872	PPP1R12A|ENST00000548318.1	-	79828370,79832331,79845301,79848787,79872807	79828464,79832491,79845420,79848931,79872872	0.888889
spleen_male_adult_54_years	chr1	26831997	26832023	26832019	+	High_confidence	65	67	159	10.703548	6.044371	chr1	26831803	26832078	LINE|L2|L2b	+	chr1	26832019	26851174	ZDHHC18|ENST00000534643.5	+	26832019,26832446,26848607,26850300,26850557,26851128	26832072,26832607,26848757,26850438,26850606,26851174	0.786164
spleen_male_adult_54_years	chr4	39627120	39627121	39627120	-	High_confidence	638	656	712	47.930355	5.799516	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547052	39627107	STRG.37432.2	-	39547052,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627107	0.915730
spleen_male_adult_54_years	chr16	15740077	15740078	15740077	-	RAMPAGE_only	26	26	33	2.221491	4.476410	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.969697
spleen_male_adult_54_years	chr1	26284558	26284576	26284558	-	RAMPAGE_only	5	5	14	0.942451	3.378783	chr1	26284514	26284630	SINE|MIR|MIR3	-	chr1	26282304	26298026	UBXN11|ENST00000496466.1	-	26282304,26282648,26282863,26284141,26284361,26285822,26294204,26296918,26297426,26297961	26282569,26282789,26282937,26284281,26285541,26286037,26294331,26296995,26297481,26298026	1.000000
spleen_male_adult_54_years	chr7	139719014	139719025	139719024	-	RAMPAGE_only	3	3	9	0.605861	2.750000	chr7	139718933	139719132	LINE|L2|L2	+	chr7	139583523	139717013	HIPK2|ENST00000342645.7	-	139583523,139600434,139604080,139613201,139614285,139620400,139626600,139628952,139631164,139631601,139715931	139584064,139600596,139604223,139613323,139614493,139620563,139626785,139629039,139631284,139631725,139717013	0.666667
spleen_male_adult_54_years	chr15	34154820	34154884	34154833	-	High_confidence	10	10	48	3.231260	5.009762	chr15	34154725	34155010	LTR|ERV1|LTR10A	-	chr15	34147202	34154831	KATNBL1|ENST00000560308.5	-	34147202,34147379,34148631,34152789,34154643	34147289,34147430,34148750,34153069,34154831	0.750000
spleen_male_adult_54_years	chr15	42493815	42493838	42493837	-	RAMPAGE_only	5	5	14	0.942451	3.093069	chr15	42493564	42494368	LINE|L2|L2b	+	chr15	42415871	42491141	ZNF106|ENST00000564754.6	-	42415871,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957,42466052,42472235,42490979	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457158,42466114,42472321,42491141	0.785714
spleen_male_adult_54_years	chr19	58306127	58306147	58306141	+	High_confidence	9	9	19	1.279040	3.076103	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.631579
spleen_male_adult_54_years	chr9	128684459	128684493	128684492	-	High_confidence	18	18	78	5.250797	5.602271	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683837	128684485	STRG.82719.1	-	128683837	128684485	0.730769
spleen_male_adult_54_years	chr3	128651525	128651529	128651528	-	High_confidence	10	10	19	1.279040	3.149673	chr3	128651508	128651582	LINE|L1|L1MC4a	+	chr3	128632120	128651529	RPN1|ENST00000495462.5	-	128632120,128637798,128644918,128651372	128632157,128638105,128644983,128651529	0.842105
spleen_male_adult_54_years	chr1	116806390	116806402	116806401	-	High_confidence	3	3	7	0.471225	2.584963	chr1	116805996	116806462	LTR|ERVL|LTR16D1	-	chr1	116805823	116806398	STRG.6750.1	-	116805823	116806398	0.714286
spleen_male_adult_54_years	chr1	36479576	36479635	36479634	-	RAMPAGE_only	6	6	21	1.413676	4.070656	chr1	36479521	36479739	SINE|MIR|MIRb	+	chr1	36466117	36482899	STRG.1950.6	-	36466117,36467229,36467557,36467821,36468074,36469155,36469651,36471432,36472065,36472237,36472516,36473434,36473763,36475376,36481477,36482810	36466827,36467311,36467651,36467962,36468221,36469257,36469840,36471646,36472139,36472391,36472686,36473622,36473887,36479516,36481537,36482899	1.000000
spleen_male_adult_54_years	chr6	130894344	130894379	130894344	-	RAMPAGE_only	4	4	17	1.144405	3.616875	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	0.882353
spleen_male_adult_54_years	chr5	78549225	78549228	78549225	-	High_confidence	2	3	7	0.471225	2.584963	chr5	78548966	78549452	LTR|ERVL-MaLR|MLT1H	-	chr5	78485214	78549151	LHFPL2|ENST00000515007.6	-	78485214,78509783,78549025	78489153,78510398,78549151	0.857143
spleen_male_adult_54_years	chr12	72075638	72075657	72075642	+	RAMPAGE_only	7	7	25	1.682948	4.133661	chr12	72075692	72075791	LINE|L1|L1ME3A	+	chr12	72087256	72621328	STRG.101218.2	+	72087256,72105647,72162975,72286680,72377994,72469757,72473066,72499497,72542290,72562164,72562852,72568567,72575254,72575486,72618890,72621107	72087439,72105752,72163108,72286954,72378121,72469912,72473180,72499635,72542356,72562230,72563040,72568656,72575388,72575542,72619038,72621328	0.800000
spleen_male_adult_54_years	chr8	129970956	129970966	129970965	-	High_confidence	5	5	10	0.673179	3.169925	chr8	129970879	129971079	SINE|MIR|MIR	+	chr8	129855582	129970990	FAM49B|ENST00000519142.5	-	129855582,129862228,129871374,129879388,129903311,129904498,129912469,129970942	129855747,129862334,129871496,129879471,129903350,129904585,129912515,129970990	0.600000
spleen_male_adult_54_years	chr5	160204808	160204826	160204808	-	High_confidence	6	6	19	1.279040	3.947703	chr5	160204479	160204790	SINE|Alu|AluSq2	-	chr5	160196590	160204826	AC008609.1|ENST00000501818.1	-	160196590,160204721	160199171,160204826	0.736842
spleen_male_adult_54_years	chr11	121448859	121448885	121448884	+	RAMPAGE_only	14	17	42	2.827352	4.834184	chr11	121448674	121449006	LINE|L2|L2b	-	chr11	121452202	121633762	SORL1|NM_003105.5	+	121452202,121470006,121478117,121488031,121490042,121496868,121513002,121514151,121520656,121522585,121522915,121532463,121543547,121545242,121549959,121550584,121553936,121555186,121557313,121558590,121559518,121566939,121570156,121574240,121577280,121583457,121586221,121588019,121589258,121590039,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121452616,121470123,121478243,121488193,121490110,121497049,121513104,121514321,121520849,121522703,121522989,121532552,121543726,121545429,121550088,121550670,121554109,121555318,121557405,121558837,121559657,121567113,121570270,121574363,121577400,121583583,121586329,121588151,121589390,121590174,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121633762	0.690476
spleen_male_adult_54_years	chr18	1407205	1407231	1407230	-	High_confidence	2	2	6	0.403907	2.584963	chr18	1407047	1407340	SINE|Alu|AluY	+	chr18	1268310	1407180	LINC00470|ENST00000412816.7	-	1268310,1272441,1275965,1368484,1406986	1269852,1272511,1276077,1368597,1407180	0.833333
spleen_male_adult_54_years	chrX	48535958	48535959	48535958	+	RAMPAGE_only	14	14	17	1.144405	3.327820	chrX	48535717	48536090	LTR|ERVL-MaLR|MSTC	+	chrX	48539456	48562609	TBC1D25|ENST00000376771.8	+	48539456,48541332,48544868,48558896,48559157,48559613	48539920,48541442,48545023,48559024,48559346,48562609	0.647059
spleen_male_adult_54_years	chr5	14653390	14653391	14653390	-	High_confidence	26	26	26	1.750266	3.657385	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.923077
spleen_male_adult_54_years	chr1	110897839	110897876	110897875	+	RAMPAGE_only	41	44	87	5.856658	5.040492	chr1	110897898	110898002	SINE|MIR|MIR	+	chr1	110894308	110899851	CD53|ENST00000497404.1	+	110894308,110894959,110899123	110894401,110895055,110899851	1.000000
spleen_male_adult_54_years	chr11	67276899	67276958	67276899	+	High_confidence	3	3	14	0.942451	3.664498	chr11	67276580	67276964	LINE|L1|L1MB8	-	chr11	67276536	67286555	GRK2|ENST00000416281.6	+	67276536,67279199,67279417,67279625,67279838,67280731,67281458,67281649,67281821,67282751,67283127,67283706,67283853,67284210,67284846,67285074,67285285	67277348,67279273,67279519,67279700,67279900,67281184,67281558,67281728,67282542,67282818,67283228,67283773,67283949,67284373,67284983,67285188,67286555	0.785714
spleen_male_adult_54_years	chr4	78600124	78600130	78600124	+	RAMPAGE_only	13	16	25	1.682948	3.621654	chr4	78599930	78600224	LTR|ERV1|MER92A	-	chr4	78601863	78610451	ANXA3|ENST00000503776.2	+	78601863,78610055	78604399,78610451	0.520000
spleen_male_adult_54_years	chr12	62305770	62305777	62305770	+	RAMPAGE_only	6	6	13	0.875133	2.815072	chr12	62305734	62306281	LTR|ERVL-MaLR|MLT1F	+	chr12	62260407	62321569	STRG.100413.18	+	62260407,62294178,62302789,62321463	62260503,62294306,62314916,62321569	1.000000
spleen_male_adult_54_years	chr12	10553364	10553365	10553364	+	High_confidence	52	53	57	3.837121	5.096048	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.842105
spleen_male_adult_54_years	chr4	2867795	2867851	2867835	+	High_confidence	23	23	139	9.357190	5.506034	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.949640
spleen_male_adult_54_years	chr19	33395177	33395191	33395177	-	High_confidence	23	25	49	3.298578	4.507713	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	0.897959
spleen_male_adult_54_years	chr22	32580154	32580161	32580160	+	RAMPAGE_only	18	18	32	2.154173	4.168244	chr22	32580186	32580275	DNA|hAT-Charlie|MER58B	+	chr22	32583299	32584204	Z82246.1|ENST00000428201.1	+	32583299,32583876	32583428,32584204	0.906250
spleen_male_adult_54_years	chr6	169654674	169654696	169654674	-	High_confidence	4	5	11	0.740497	3.121928	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169653363	169654891	STRG.60676.1	-	169653363	169654891	0.545455
spleen_male_adult_54_years	chr17	59729704	59729734	59729733	+	High_confidence	25	25	128	8.616693	5.919342	chr17	59729673	59729983	SINE|Alu|AluSq2	-	chr17	59729714	59737517	VMP1|ENST00000587259.5	+	59729714,59731420,59735337,59737452	59730017,59731522,59735473,59737517	0.867188
spleen_male_adult_54_years	chr1	89272574	89272575	89272574	-	High_confidence	6	6	8	0.538543	2.750000	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89262697	89272804	GBP5|ENST00000443807.1	-	89262697,89263735,89264685,89266345,89266956,89267416,89268728,89269365	89262785,89263948,89264966,89266588,89267153,89267526,89268856,89272804	1.000000
spleen_male_adult_54_years	chr1	206910275	206910291	206910275	-	High_confidence	4	4	9	0.605861	2.750000	chr1	206910225	206910298	DNA|hAT-Ac|OldhAT1	+	chr1	206904524	206909945	FCMR|ENST00000474041.5	-	206904524,206909461,206909724	206905147,206909520,206909945	0.777778
spleen_male_adult_54_years	chr17	2975660	2975690	2975664	+	RAMPAGE_only	3	5	17	1.144405	3.572469	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2892017	3037738	STRG.122645.2	+	2892017,2905283,2957758,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005150,3005954,3008010,3018060,3020476,3026007,3026943,3030921,3032410,3033391	2892147,2905368,2957794,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026464,3027070,3030998,3032449,3037738	0.941176
spleen_male_adult_54_years	chr11	9716939	9716974	9716939	+	RAMPAGE_only	2	2	14	0.942451	3.378783	chr11	9716634	9717133	LINE|L2|L2	-	chr11	9720065	9738259	SWAP70|ENST00000534662.1	+	9720065,9724657,9728052,9729342,9732528,9738212	9720483,9724885,9728199,9729451,9732710,9738259	1.000000
spleen_male_adult_54_years	chr11	57794056	57794070	57794069	+	RAMPAGE_only	6	7	10	0.673179	2.725481	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.800000
spleen_male_adult_54_years	chr13	50185864	50185885	50185864	+	High_confidence	4	4	10	0.673179	2.921928	chr13	50180295	50186330	LINE|L1|L1PA2	-	chr13	50185879	50528064	DLEU1|ENST00000485007.5	+	50185879,50390197,50415088,50433412,50527865	50186070,50390291,50415202,50433550,50528064	0.600000
spleen_male_adult_54_years	chr1	155954904	155954917	155954904	-	RAMPAGE_only	4	4	8	0.538543	2.521641	chr1	155954717	155954897	LINE|L1|L1ME4b	-	chr1	155947366	155952721	ARHGEF2|ENST00000368315.8	-	155947366,155950298,155950828,155950873,155951482,155951740,155951918,155952115,155952627	155948015,155950482,155950872,155951272,155951533,155951776,155951986,155952235,155952721	0.750000
spleen_male_adult_54_years	chr4	38078765	38078788	38078772	+	RAMPAGE_only	4	4	19	1.279040	4.058814	chr4	38078433	38078801	LTR|ERVL-MaLR|MLT1A	+	chr4	38020676	38137743	TBC1D1|ENST00000510573.6	+	38020676,38021585,38027787,38035587,38044361,38045816,38049617,38053105,38054198,38089931,38095928,38102998,38115709,38118032,38124961,38133083,38137134	38020695,38021718,38027879,38035698,38044490,38045903,38049898,38053225,38054338,38090117,38096090,38103157,38115954,38118192,38125131,38133257,38137743	0.947368
spleen_male_adult_54_years	chr9	114394410	114394413	114394412	-	High_confidence	17	22	26	1.750266	4.026987	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	1.000000
spleen_male_adult_54_years	chr16	57892947	57892960	57892959	+	High_confidence	11	11	27	1.817584	3.997953	chr16	57892560	57893049	LINE|L2|L2a	+	chr16	57893318	57894720	STRG.120888.1	+	57893318	57894720	0.518519
spleen_male_adult_54_years	chr12	132782334	132782358	132782357	-	RAMPAGE_only	3	3	7	0.471225	2.521641	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132768914	132822311	GOLGA3|ENST00000450791.6	-	132768914,132774156,132775140,132776633,132776957,132777665,132780797,132782295,132784163,132786338,132786692,132789026,132791215,132795851,132796538,132798339,132801766,132804715,132807176,132807890,132813306,132816539,132821995	132773294,132774320,132775305,132776756,132777090,132777805,132780914,132782493,132784307,132786555,132786787,132789290,132791293,132796220,132796700,132798477,132801969,132805022,132807288,132808549,132813419,132816812,132822311	1.000000
spleen_male_adult_54_years	chr11	48044786	48044789	48044786	+	High_confidence	3	3	7	0.471225	2.584963	chr11	48044816	48044902	LINE|L2|L2b	+	chr11	48044803	48121147	PTPRJ|ENST00000526550.1	+	48044803,48046229,48110057,48112746,48121002	48044871,48046331,48110076,48112983,48121147	0.571429
spleen_male_adult_54_years	chr14	63761595	63761628	63761626	+	High_confidence	39	60	153	10.299641	5.868691	chr14	63761283	63761770	LTR|ERV1|MER39	-	chr14	63761610	63852702	STRG.110526.1	+	63761610,63852500	63761986,63852702	0.764706
spleen_male_adult_54_years	chr11	914676	914696	914676	-	High_confidence	5	5	27	1.817584	4.133661	chr11	914587	914736	SINE|Alu|AluJb	+	chr11	870121	914774	STRG.89856.5	-	870121,870418,883147,884067,893426,899339,900003,900935,902197,902961,904705,914303	870163,870499,883303,884169,893519,899401,900110,900980,902330,903111,904859,914774	0.851852
spleen_male_adult_54_years	chr1	51403424	51403429	51403428	-	RAMPAGE_only	8	8	16	1.077087	3.006239	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.937500
spleen_male_adult_54_years	chr11	57793743	57793744	57793743	+	RAMPAGE_only	4	4	7	0.471225	2.521641	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57781602	57796584	CTNND1|ENST00000530068.5	+	57781602,57791491,57794009,57795576,57796456	57781646,57791673,57794081,57795729,57796584	0.714286
spleen_male_adult_54_years	chr2	217911720	217911743	217911720	-	RAMPAGE_only	4	4	16	1.077087	3.030639	chr2	217911550	217911776	SINE|MIR|MIRb	-	chr2	217848883	217905461	TNS1|ENST00000413554.5	-	217848883,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217905295	217849087,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217905461	0.937500
spleen_male_adult_54_years	chr6	43502209	43502210	43502209	+	High_confidence	9	11	11	0.740497	2.913977	chr6	43502114	43502254	SINE|MIR|MIR3	-	chr6	43501525	43506553	TJAP1|ENST00000454762.1	+	43501525,43502282,43503400,43503622	43501687,43502349,43503508,43506553	1.000000
spleen_male_adult_54_years	chr9	137738553	137738574	137738553	+	High_confidence	3	4	19	1.279040	4.037401	chr9	137738221	137739080	LINE|L1|L1MB3	+	chr9	137738606	137754221	EHMT1|ENST00000495657.5	+	137738606,137743370,137743901,137752330,137754170	137738779,137743528,137744090,137752408,137754221	0.578947
spleen_male_adult_54_years	chr11	72135670	72135728	72135708	+	High_confidence	333	389	1413	95.120212	6.640695	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	0.961783
spleen_male_adult_54_years	chr21	34512192	34512220	34512209	-	High_confidence	49	49	170	11.444045	5.921176	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.811765
spleen_male_adult_54_years	chr4	79492406	79492410	79492409	+	High_confidence	10	10	18	1.211722	3.410417	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492415	79576460	LINC00989|ENST00000508174.5	+	79492415,79493151,79513784,79575140	79492623,79493585,79513902,79576460	0.944444
spleen_male_adult_54_years	chr19	49086520	49086547	49086520	+	High_confidence	59	62	102	6.866427	5.419027	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.872549
spleen_male_adult_54_years	chr8	65979196	65979205	65979196	+	RAMPAGE_only	15	15	24	1.615630	4.088779	chr8	65979005	65979377	LTR|ERVL-MaLR|THE1B	+	chr8	66021555	66100520	DNAJC5B|NM_033105.4	+	66021555,66043487,66051530,66076659,66080376,66099936	66021705,66043611,66051666,66076873,66080548,66100520	0.500000
spleen_male_adult_54_years	chr9	127847120	127847139	127847134	-	High_confidence	4	5	11	0.740497	3.459432	chr9	127847119	127847312	SINE|MIR|MIR	-	chr9	127815011	127847167	ENG|NM_001278138.1	-	127815011,127815942,127817148,127818119,127818715,127819621,127819899,127824303,127824799,127825230,127825694,127826509,127829686,127843093,127846942	127815806,127816053,127817203,127818377,127818832,127819660,127820037,127824446,127824974,127825357,127825860,127826672,127829827,127843245,127847167	0.909091
spleen_male_adult_54_years	chr17	4143196	4143215	4143199	+	High_confidence	40	40	87	5.856658	5.176187	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.954023
spleen_male_adult_54_years	chr11	72217309	72217310	72217309	+	High_confidence	4	4	7	0.471225	2.584963	chr11	72217038	72217322	SINE|Alu|AluSx1	-	chr11	72216830	72221586	FOLR2|ENST00000321324.11	+	72216830,72218572,72220869,72221175,72221469	72216925,72218734,72221058,72221311,72221586	0.714286
spleen_male_adult_54_years	chr19	3062922	3062978	3062922	-	High_confidence	5	6	29	1.952219	3.782122	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.931034
spleen_male_adult_54_years	chr5	18746155	18746173	18746155	-	High_confidence	38	39	102	6.866427	5.576851	chr5	18746065	18746356	LTR|ERV1|LTR12F	-	chr5	18745038	18746150	STRG.43798.1	-	18745038	18746150	0.911765
spleen_male_adult_54_years	chr9	131121784	131122053	131122023	+	RAMPAGE_only	72	86	447	30.091107	6.167835	chr9	131121938	131122086	LINE|L2|L2c	-	chr9	131096550	131123145	AIF1L|ENST00000372300.5	+	131096550,131096801,131111596,131114576,131117755,131120234	131096660,131096863,131111663,131114618,131117847,131123145	0.995526
spleen_male_adult_54_years	chr17	68944801	68944838	68944837	+	RAMPAGE_only	8	8	24	1.615630	2.587504	chr17	68944814	68945164	LINE|L1|L1MCc	+	chr17	69004713	69018323	ABCA9-AS1|ENST00000458677.1	+	69004713,69011982,69012251,69018103	69004793,69012103,69012353,69018323	0.916667
spleen_male_adult_54_years	chr1	183590910	183590926	183590910	-	High_confidence	17	17	42	2.827352	4.930484	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.833333
spleen_male_adult_54_years	chr6	30493509	30493936	30493788	+	RAMPAGE_only	142	149	1124	75.665335	6.992450	chr6	30493706	30494073	LTR|ERVL-MaLR|MST-int	+	chr6	30489466	30494205	HLA-E|ENST00000376630.4	+	30489466,30489725,30490239,30491136,30491536,30492403,30492540,30492748	30489595,30489995,30490515,30491412,30491653,30492436,30492583,30494205	0.994662
spleen_male_adult_54_years	chr19	54276967	54276986	54276985	-	RAMPAGE_only	4	4	8	0.538543	2.750000	chr19	54276972	54277190	SINE|MIR|MIRb	-	chr19	54274465	54278544	LILRB2|ENST00000455108.5	-	54274465,54275950,54276246,54276380,54276806,54277549,54277888,54278259	54274829,54276003,54276301,54276456,54276929,54277600,54277939,54278544	0.750000
spleen_male_adult_54_years	chr2	218392665	218392683	218392682	+	High_confidence	5	5	18	1.211722	3.169925	chr2	218392657	218392750	SINE|MIR|MIRc	-	chr2	218392589	218394635	SLC11A1|ENST00000490536.1	+	218392589,218394119	218393130,218394635	0.888889
spleen_male_adult_54_years	chr14	92633499	92633503	92633499	+	RAMPAGE_only	6	6	11	0.740497	2.845351	chr14	92633507	92633718	LTR|ERVL|MER21C	+	chr14	92576233	92688994	RIN3|NM_001319987.1	+	92576233,92577359,92615406,92641237,92651581,92659160,92676474,92684986,92687925	92576381,92577477,92615479,92641329,92653075,92659469,92676606,92685150,92688994	0.545455
spleen_male_adult_54_years	chr5	140700445	140700452	140700445	+	High_confidence	380	523	1082	72.837983	4.854888	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.986137
spleen_male_adult_54_years	chr6	83086989	83087043	83087023	+	RAMPAGE_only	18	18	99	6.664473	5.363392	chr6	83086937	83087482	LINE|L2|L2a	-	chr6	83096728	83168331	DOP1A|ENST00000369739.7	+	83096728,83096924,83100704,83108909,83110124,83113322,83118887,83119774,83120682,83121929,83122862,83124704,83125165,83125499,83128886,83130122,83132175,83134186,83135618,83137172,83139999,83140220,83141920,83145523,83147235,83148758,83151592,83151882,83152287,83153510,83153893,83154179,83155950,83157181,83158566,83159795,83162789,83164659,83167861	83096823,83097115,83100886,83109080,83110314,83113421,83118987,83119857,83120791,83122050,83122982,83124819,83125195,83125733,83129508,83130397,83132328,83134287,83135878,83139162,83140111,83140403,83142046,83145658,83147291,83148863,83151659,83152027,83152367,83153620,83154043,83154241,83156103,83157318,83158622,83159960,83162919,83164719,83168331	0.646465
spleen_male_adult_54_years	chr4	158173024	158173025	158173024	-	High_confidence	51	51	74	4.981526	5.454395	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.837838
spleen_male_adult_54_years	chr8	8244522	8244567	8244546	-	High_confidence	6	6	23	1.548312	3.880180	chr8	8244455	8244522	LTR|ERV1|MER57A-int	-	chr8	8237673	8244667	ALG1L13P|ENST00000523017.5	-	8237673,8238190,8239494,8240428,8241321,8242786,8244459	8237719,8238301,8239554,8240549,8241400,8242926,8244667	0.565217
spleen_male_adult_54_years	chr3	33838256	33838257	33838256	+	RAMPAGE_only	13	13	16	1.077087	3.452820	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.562500
spleen_male_adult_54_years	chrX	48683361	48683363	48683362	+	High_confidence	131	232	233	15.685074	5.889702	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.982833
spleen_male_adult_54_years	chr16	3854368	3854388	3854387	-	RAMPAGE_only	3	3	7	0.471225	2.521641	chr16	3854348	3854525	LTR|ERVL-MaLR|MLT1L	+	chr16	3725053	3880120	CREBBP|NM_004380.2	-	3725053,3731191,3731775,3736035,3736649,3738558,3739577,3740398,3744893,3745276,3749626,3751725,3757287,3757808,3758853,3767719,3769173,3770569,3773750,3774568,3777612,3778010,3778699,3780731,3781203,3782683,3791980,3793385,3810602,3850296,3879831	3729874,3731473,3731937,3736203,3736815,3738672,3739724,3740549,3744961,3745354,3749683,3751806,3757376,3758048,3758972,3767909,3769353,3770986,3773930,3774693,3777657,3778182,3778817,3780878,3781306,3782926,3792094,3793626,3810779,3851009,3880120	1.000000
spleen_male_adult_54_years	chr3	189121294	189121332	189121294	+	High_confidence	8	8	38	2.558081	4.520000	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189121298	189121904	STRG.35021.1	+	189121298	189121904	0.657895
spleen_male_adult_54_years	chr7	85051418	85051419	85051418	-	RAMPAGE_only	23	27	30	2.019537	4.423252	chr7	85051293	85051729	LINE|L2|L2b	+	chr7	84999396	85041939	SEMA3D|ENST00000484038.1	-	84999396,85006801,85012781,85015058,85018251,85020232,85022390,85036888,85040672,85041837	84999865,85006941,85012846,85015216,85018293,85020321,85022613,85037033,85040742,85041939	0.566667
spleen_male_adult_54_years	chr12	126772230	126772259	126772250	-	High_confidence	14	15	60	4.039075	5.159828	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126771383	126772251	STRG.103698.1	-	126771383	126772251	0.616667
spleen_male_adult_54_years	chr2	240022172	240022173	240022172	-	RAMPAGE_only	4	4	7	0.471225	2.521641	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
spleen_male_adult_54_years	chr10	7186614	7186630	7186614	-	RAMPAGE_only	4	4	14	0.942451	3.392747	chr10	7186480	7186609	SINE|Alu|AluJo	-	chr10	7158623	7409341	SFMBT2|ENST00000361972.8	-	7158623,7170927,7171894,7172494,7175989,7188623,7197547,7200413,7202479,7205814,7220410,7227854,7243557,7248547,7276891,7283903,7285865,7367648,7370280,7381798,7409301	7163910,7171056,7172158,7172661,7176165,7188733,7197687,7200484,7202522,7205928,7220537,7227937,7243705,7248649,7276989,7284150,7285954,7367889,7370375,7381949,7409341	0.928571
spleen_male_adult_54_years	chr20	48642627	48642628	48642627	-	High_confidence	12	12	16	1.077087	3.625000	chr20	48642615	48642719	SINE|MIR|MIRc	+	chr20	48642112	48642738	PREX1|ENST00000496915.1	-	48642112,48642406	48642258,48642738	0.500000
spleen_male_adult_54_years	chr9	123179187	123179188	123179187	-	RAMPAGE_only	7	7	8	0.538543	2.807355	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.875000
spleen_male_adult_54_years	chr3	135516281	135516344	135516281	-	High_confidence	6	6	19	1.279040	3.794653	chr3	135516138	135516365	LINE|CR1|X7C_LINE	+	chr3	135495166	135516365	STRG.32523.3	-	135495166,135516149	135496495,135516365	0.736842
spleen_male_adult_54_years	chr7	107580245	107580267	107580245	+	High_confidence	277	278	1358	91.417727	6.536735	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.942563
spleen_male_adult_54_years	chr12	8567935	8567939	8567937	-	High_confidence	70	151	196	13.194311	5.476875	chr12	8567561	8568746	LTR|ERV1|MER52C	-	chr12	8534580	8567928	STRG.97129.1	-	8534580,8536089,8537114,8539216,8539854,8540760,8567493	8534809,8536205,8537266,8539306,8539947,8541055,8567928	0.846939
spleen_male_adult_54_years	chr1	6208681	6208682	6208681	-	High_confidence	44	44	44	2.961988	3.715002	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.977273
spleen_male_adult_54_years	chr19	46350849	46350870	46350849	+	High_confidence	126	138	244	16.425571	5.544874	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46350866	46387164	STRG.133660.16	+	46350866,46353747,46375603,46376452,46383410,46383779,46384803,46387092	46350950,46353989,46375751,46376574,46383476,46383878,46384909,46387164	0.918033
spleen_male_adult_54_years	chr12	119704554	119704570	119704554	-	RAMPAGE_only	18	21	58	3.904439	4.938977	chr12	119704528	119704734	DNA|hAT-Charlie|MER20	-	chr12	119701851	119710732	CIT|ENST00000538073.5	-	119701851,119704362,119708178,119710539	119701958,119704455,119708318,119710732	0.637931
spleen_male_adult_54_years	chr22	37755657	37755658	37755657	+	RAMPAGE_only	20	20	25	1.682948	3.372879	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	1.000000
spleen_male_adult_54_years	chr5	180909572	180909577	180909572	+	High_confidence	50	54	98	6.597156	5.250192	chr5	180909597	180909731	SINE|Alu|FLAM_C	+	chr5	180909572	180948353	BTNL8|ENST00000514448.5	+	180909572,180911338,180947511	180909697,180911614,180948353	0.693878
spleen_male_adult_54_years	chr3	48479447	48479459	48479458	-	High_confidence	7	7	12	0.807815	3.277613	chr3	48479425	48479570	LINE|L1|L1M4	+	chr3	48469359	48479559	SHISA5|ENST00000486344.5	-	48469359,48469727,48479176	48469573,48469843,48479559	0.750000
spleen_male_adult_54_years	chr3	172289773	172289787	172289773	+	RAMPAGE_only	2	3	10	0.673179	2.846439	chr3	172289773	172289960	SINE|MIR|MIRb	+	chr3	172281476	172354214	STRG.34420.5	+	172281476,172295362,172298727,172307362,172310827,172328951,172330540,172333088,172334943,172337329,172341112,172344085,172346326,172347211,172352802	172285984,172295514,172298787,172307501,172310881,172329076,172330715,172333175,172335082,172337401,172341231,172344258,172346440,172347361,172354214	1.000000
spleen_male_adult_54_years	chr1	147172975	147172997	147172975	+	High_confidence	6	8	26	1.750266	4.238901	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.923077
spleen_male_adult_54_years	chr11	62600171	62600187	62600186	-	High_confidence	4	4	8	0.538543	2.521641	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.500000
spleen_male_adult_54_years	chr18	2589097	2589121	2589120	+	RAMPAGE_only	12	13	24	1.615630	4.334963	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	1.000000
spleen_male_adult_54_years	chr1	235865105	235865165	235865105	-	High_confidence	3	3	27	1.817584	4.213661	chr1	235864944	235865509	LINE|L2|L2a	+	chr1	235759174	235865312	STRG.12113.3	-	235759174,235762719,235766078,235770159,235773841,235774912,235777062,235780864,235781926,235787199,235788700,235791698,235793502,235800319,235800870,235802907,235804503,235805742,235808454,235812970,235830225,235833577,235865055	235759599,235762851,235766277,235770297,235773991,235775086,235777308,235781055,235782087,235787373,235788845,235792125,235793612,235800386,235801097,235803064,235804665,235806772,235810534,235813061,235830424,235833667,235865312	0.925926
spleen_male_adult_54_years	chr7	21851161	21851196	21851184	+	High_confidence	8	8	36	2.423445	4.239098	chr7	21851065	21851438	LTR|ERVL-MaLR|THE1C	+	chr7	21851161	21861970	DNAH11|ENST00000607413.5	+	21851161,21852466,21854314,21861852	21851320,21852631,21854455,21861970	1.000000
spleen_male_adult_54_years	chr8	39017063	39017127	39017077	+	High_confidence	18	19	61	4.106393	4.929737	chr8	39016988	39017120	SINE|MIR|MIRb	-	chr8	39017035	39021713	ADAM9|ENST00000481058.1	+	39017035,39018852,39021642	39017414,39018918,39021713	0.737705
spleen_male_adult_54_years	chr14	81170378	81170420	81170413	-	High_confidence	10	16	71	4.779572	5.218220	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.985915
spleen_male_adult_54_years	chr13	30377191	30377198	30377191	-	High_confidence	4	4	10	0.673179	2.646439	chr13	30377180	30377360	DNA|hAT-Charlie|MER5A	+	chr13	30357741	30377145	LINC00426|ENST00000420219.5	-	30357741,30358253,30363160,30372284,30375466,30376826	30357889,30358376,30363226,30372374,30375776,30377145	0.900000
spleen_male_adult_54_years	chr20	4801020	4801021	4801020	-	RAMPAGE_only	6	6	9	0.605861	2.750000	chr20	4800953	4801009	DNA|hAT-Ac|OldhAT1	-	chr20	4780022	4815123	RASSF2|NM_170774.1	-	4780022,4786230,4787632,4788216,4789595,4790450,4792538,4795814,4798009,4800971,4815101	4784342,4786328,4787754,4788268,4789697,4790611,4792627,4795966,4798085,4801062,4815123	0.888889
spleen_male_adult_54_years	chr1	78620056	78620058	78620057	+	High_confidence	59	95	95	6.395202	5.848494	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.789474
spleen_male_adult_54_years	chr19	45524130	45524140	45524139	+	RAMPAGE_only	14	16	25	1.682948	4.055958	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.760000
spleen_male_adult_54_years	chr2	191682575	191682594	191682593	+	RAMPAGE_only	7	10	24	1.615630	3.970573	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191686157	STRG.23012.9	+	191678989,191681945,191684229,191685598	191679128,191683804,191684296,191686157	0.916667
spleen_male_adult_54_years	chr2	226843279	226843298	226843297	+	RAMPAGE_only	3	3	8	0.538543	2.521641	chr2	226841304	226844068	LINE|L1|L1PA11	-	chr2	226837547	226864856	RHBDD1|ENST00000436481.1	+	226837547,226838072,226839408,226864603	226837770,226838154,226839627,226864856	0.875000
spleen_male_adult_54_years	chr3	53168712	53168746	53168745	+	RAMPAGE_only	13	13	28	1.884902	4.180451	chr3	53168641	53169049	LINE|L2|L2b	-	chr3	53165128	53184973	PRKCD|ENST00000464818.1	+	53165128,53178403,53179576,53181206,53181443,53181700,53184873	53165215,53178537,53179776,53181267,53181606,53181732,53184973	0.857143
spleen_male_adult_54_years	chr2	185782484	185782508	185782507	+	RAMPAGE_only	2	2	7	0.471225	2.584963	chr2	185782182	185782614	LINE|L2|L2c	-	chr2	185738894	185833290	FSIP2|ENST00000424728.5	+	185738894,185739345,185743132,185744321,185745428,185746668,185747312,185753721,185756191,185760987,185761971,185763182,185764501,185782704,185786251,185788642,185799696,185813544,185815370,185824433,185828155,185831812,185833089	185738993,185739471,185743294,185744411,185745568,185746810,185747423,185753842,185756278,185761103,185762017,185763289,185764565,185782762,185786288,185797526,185809133,185814042,185815471,185824480,185828199,185831882,185833290	0.571429
spleen_male_adult_54_years	chr5	170036535	170036553	170036552	+	RAMPAGE_only	6	6	10	0.673179	2.721928	chr5	170036590	170036728	LINE|L2|L2c	+	chr5	170008496	170083377	STRG.51031.4	+	170008496,170008687,170018959,170027862,170034398,170036514,170041054,170042012,170045815,170047509,170050255,170055304,170067509,170069136,170075946,170077709,170078974,170080162,170081841,170082795	170008597,170008746,170019108,170027948,170034555,170036555,170041145,170042132,170045905,170047614,170050397,170057666,170067686,170069220,170076084,170077837,170079146,170080283,170081984,170083377	0.700000
spleen_male_adult_54_years	chr18	7946875	7946898	7946878	+	High_confidence	70	72	182	12.251860	5.472983	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.873626
spleen_male_adult_54_years	chr21	34512314	34512316	34512314	-	High_confidence	15	23	30	2.019537	4.506891	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34446687	34512275	KCNE1|NM_000219.5	-	34446687,34458653,34511100,34512026	34449684,34458764,34511315,34512275	0.733333
spleen_male_adult_54_years	chrX	71198186	71198196	71198195	-	High_confidence	17	17	35	2.356127	4.879143	chrX	71198068	71198187	SINE|MIR|MIR3	-	chrX	71183558	71198175	AL590764.1|ENST00000450860.1	-	71183558,71197908	71184017,71198175	0.571429
spleen_male_adult_54_years	chr11	41497434	41497437	41497434	-	RAMPAGE_only	3	3	8	0.538543	2.521641	chr11	41497209	41497470	DNA|TcMar-Tigger|Tigger7	+	chr11	40648223	41459636	LRRC4C|ENST00000534577.1	-	40648223,40933634,41222796,41459430	40648278,40933723,41223008,41459636	0.500000
spleen_male_adult_54_years	chr20	44671698	44671727	44671726	-	High_confidence	8	8	18	1.211722	3.947703	chr20	44671177	44675874	LTR|ERV1|HERVH-int	+	chr20	44656450	44671739	LINC01260|NR_034104.1	-	44656450,44658994,44659710,44663353,44671638	44657051,44659181,44659778,44663553,44671739	0.722222
spleen_male_adult_54_years	chr2	28620070	28620071	28620070	+	High_confidence	8	8	12	0.807815	3.251629	chr2	28619941	28620136	LINE|L2|L2a	-	chr2	28620671	28630664	PLB1|ENST00000473272.1	+	28620671,28625056,28626427,28628562,28629093,28630585	28620978,28625108,28626508,28628628,28629185,28630664	0.750000
spleen_male_adult_54_years	chr9	61553482	61553507	61553506	-	RAMPAGE_only	8	8	13	0.875133	3.392747	chr9	61553370	61553505	SINE|Alu|FLAM_C	-	chr9	61549099	61555176	STRG.79517.1	-	61549099,61550815,61551099,61553328,61554751	61549986,61551008,61551221,61554492,61555176	1.000000
spleen_male_adult_54_years	chr1	1655395	1655410	1655409	-	RAMPAGE_only	13	14	28	1.884902	4.238901	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635586	1658972	STRG.239.5	-	1635586,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640392,1641047,1641661,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1642508,1645262,1649637,1652566,1655484,1657498,1658972	0.821429
spleen_male_adult_54_years	chr16	4355592	4355593	4355592	-	High_confidence	58	58	58	3.904439	5.405142	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.620690
spleen_male_adult_54_years	chr9	77945005	77945041	77945016	-	RAMPAGE_only	14	14	41	2.760034	5.144018	chr9	77944910	77945186	DNA|TcMar-Tigger|Tigger19b	+	chr9	77797527	78030604	GNAQ|ENST00000411677.1	-	77797527,77815615,77922160,78030514	77797648,77815770,77922345,78030604	0.780488
spleen_male_adult_54_years	chr2	71395996	71395997	71395996	+	RAMPAGE_only	5	5	8	0.538543	2.750000	chr2	71395870	71396046	LINE|L1|L1MC5a	+	chr2	71373466	71411443	STRG.17204.5	+	71373466,71380512,71398700,71400111,71400477,71401955,71403869,71405600,71406127	71380280,71396191,71399645,71400180,71400518,71402087,71403998,71405642,71411443	1.000000
spleen_male_adult_54_years	chr2	217277834	217277835	217277834	+	High_confidence	8	8	10	0.673179	3.121928	chr2	217277834	217277987	SINE|MIR|MIR3	-	chr2	217277658	217311372	STRG.24128.1	+	217277658,217282714,217296631,217302685,217309711	217278272,217282809,217296770,217302785,217311372	0.900000
spleen_male_adult_54_years	chr7	29191205	29191222	29191221	+	High_confidence	5	5	10	0.673179	2.646439	chr7	29190936	29191231	SINE|Alu|AluJr	-	chr7	29190752	29192677	STRG.62465.1	+	29190752	29192677	0.700000
spleen_male_adult_54_years	chr17	35026388	35026419	35026388	-	RAMPAGE_only	2	2	7	0.471225	2.584963	chr17	35026200	35026382	SINE|MIR|MIRc	-	chr17	35011908	35042297	RFFL|ENST00000413582.6	-	35011908,35016369,35017522,35021370,35026373,35042215	35012149,35016580,35017606,35021781,35026561,35042297	0.571429
spleen_male_adult_54_years	chr13	24272663	24272672	24272663	+	High_confidence	5	5	22	1.480994	3.916127	chr13	24272710	24272887	SINE|MIR|MIRb	+	chr13	24272688	24278769	SPATA13|ENST00000488060.1	+	24272688,24278613	24273137,24278769	0.772727
spleen_male_adult_54_years	chr10	19718640	19718657	19718653	-	RAMPAGE_only	3	3	13	0.875133	2.855389	chr10	19718256	19718642	LTR|ERVL-MaLR|MSTB	-	chr10	19710327	19728550	AL157895.1|ENST00000451713.5	-	19710327,19716798,19722113,19722329,19728404	19711288,19716890,19722225,19722422,19728550	0.692308
spleen_male_adult_54_years	chr14	77076182	77076268	77076188	-	High_confidence	224	225	554	37.294124	6.074149	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77040198	77076198	STRG.111816.3	-	77040198,77076104	77041246,77076198	0.610108
spleen_male_adult_54_years	chr1	1721675	1721705	1721704	-	High_confidence	4	4	10	0.673179	2.725481	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.700000
spleen_male_adult_54_years	chr14	73463610	73463630	73463624	-	High_confidence	293	296	563	37.899985	7.514949	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73323129	73463625	STRG.111412.18	-	73323129,73355625,73366896,73409936,73462528,73463474	73323204,73355766,73366981,73410068,73462689,73463625	0.547069
spleen_male_adult_54_years	chr15	92939462	92939477	92939476	+	High_confidence	6	6	11	0.740497	2.846439	chr15	92939359	92939489	DNA|hAT-Charlie|MER5A	+	chr15	92939653	92949228	CHD2|ENST00000637613.1	+	92939653,92941821,92942842,92944414,92945820,92946037,92946247,92948951	92939718,92941955,92943068,92944515,92945865,92946082,92946340,92949228	0.636364
spleen_male_adult_54_years	chr22	35381325	35381326	35381325	+	High_confidence	6	6	6	0.403907	2.584963	chr22	35381303	35381356	SINE|MIR|MIRb	+	chr22	35381092	35386908	HMOX1|ENST00000481190.1	+	35381092,35383105,35386684	35381329,35383226,35386908	0.666667
spleen_male_adult_54_years	chr7	85051466	85051487	85051466	-	RAMPAGE_only	4	4	14	0.942451	3.238901	chr7	85051293	85051729	LINE|L2|L2b	+	chr7	84999396	85041939	SEMA3D|ENST00000484038.1	-	84999396,85006801,85012781,85015058,85018251,85020232,85022390,85036888,85040672,85041837	84999865,85006941,85012846,85015216,85018293,85020321,85022613,85037033,85040742,85041939	0.500000
spleen_male_adult_54_years	chr4	85514917	85514942	85514917	+	RAMPAGE_only	20	20	46	3.096624	3.857434	chr4	85514854	85515090	LTR|ERVL|LTR16C	-	chr4	85475442	85723732	ARHGAP24|ENST00000506421.5	+	85475442,85570521,85721884,85723280	85475559,85570721,85721972,85723732	0.804348
spleen_male_adult_54_years	chr12	66193805	66193806	66193805	+	RAMPAGE_only	11	11	13	0.875133	3.546594	chr12	66193312	66193908	LINE|L1|L1MC3	-	chr12	66189256	66254622	STRG.100600.2	+	66189256,66203710,66209455,66210146,66211445,66217170,66226722,66228251,66244485,66244947,66245097,66247694	66194204,66203893,66209520,66210201,66211597,66217235,66226837,66228370,66244684,66245010,66245262,66254622	1.000000
spleen_male_adult_54_years	chr1	9239843	9239876	9239843	+	High_confidence	2	2	9	0.605861	2.725481	chr1	9239801	9239853	LINE|Penelope|Penelope1_Vert	+	chr1	9239843	9271337	H6PD|NM_001282587.1	+	9239843,9244924,9246965,9262058,9263508	9240018,9245561,9247083,9262328,9271337	0.888889
spleen_male_adult_54_years	chr1	207069249	207069263	207069249	+	RAMPAGE_only	3	3	9	0.605861	2.947703	chr1	207069286	207069328	SINE|MIR|MIRb	+	chr1	207053274	207077817	PFKFB2|NM_006212.2	+	207053274,207054700,207061952,207062619,207063142,207063346,207063772,207065035,207067498,207068162,207069423,207070279,207071187,207071508,207072203	207053366,207054802,207062078,207062716,207063209,207063421,207063829,207065160,207067706,207068309,207069528,207070409,207071250,207071573,207077817	0.666667
spleen_male_adult_54_years	chr22	36930296	36930345	36930296	+	RAMPAGE_only	6	6	20	1.346358	3.684184	chr22	36930052	36930305	SINE|MIR|MIRb	-	chr22	36922133	36938611	CSF2RB|ENST00000406230.5	+	36922133,36923243,36925986,36929401,36929638,36930374,36930654,36932764,36933831,36935350,36935629,36936548,36937376	36922283,36923367,36926177,36929559,36929807,36930510,36930830,36932904,36933994,36935441,36935687,36936652,36938611	0.950000
spleen_male_adult_54_years	chr1	192986899	192986921	192986920	-	RAMPAGE_only	7	7	21	1.413676	3.642150	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192935795	192957713	AL390957.1|ENST00000647436.1	-	192935795,192957303	192935903,192957713	0.809524
spleen_male_adult_54_years	chr13	74231484	74231485	74231484	+	High_confidence	4	4	6	0.403907	2.584963	chr13	74231443	74231557	SINE|MIR|MIRc	-	chr13	74231456	74259976	LINC00402|ENST00000419499.1	+	74231456,74256932	74231752,74259976	0.833333
spleen_male_adult_54_years	chr11	118700419	118700427	118700426	+	High_confidence	3	3	6	0.403907	2.584963	chr11	118700359	118700777	LTR|ERVL-MaLR|MLT1H	+	chr11	118700426	118708848	AP002954.1|ENST00000646572.1	+	118700426,118704607,118708381	118700643,118704838,118708848	0.833333
spleen_male_adult_54_years	chr12	40223752	40223762	40223752	-	RAMPAGE_only	13	13	32	2.154173	4.304229	chr12	40223632	40223865	SINE|MIR|MIRc	+	chr12	40223075	40224915	AC079630.1|ENST00000618127.1	-	40223075	40224915	0.625000
spleen_male_adult_54_years	chr12	93847558	93847588	93847587	+	RAMPAGE_only	9	11	20	1.346358	3.546439	chr12	93847114	93848198	LINE|L1|HAL1b	+	chr12	93848659	93850756	CRADD|ENST00000548330.1	+	93848659,93849969	93849342,93850756	0.800000
spleen_male_adult_54_years	chr12	60119442	60119515	60119478	+	High_confidence	54	54	374	25.176900	7.111004	chr12	60119277	60119646	LINE|L2|L2b	-	chr12	60119463	60214409	STRG.100325.1	+	60119463,60125247,60127181,60175665,60208204	60119612,60125347,60127281,60175757,60214409	0.649733
spleen_male_adult_54_years	chr11	65181222	65181271	65181222	+	High_confidence	2	2	13	0.875133	3.546594	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	1.000000
spleen_male_adult_54_years	chr16	30097080	30097081	30097080	+	High_confidence	79	79	96	6.462520	5.717018	chr16	30096875	30097207	LTR|ERV1|LTR10B2	+	chr16	30096429	30104116	AC012645.1|ENST00000515455.2	+	30096429,30103456	30097419,30104116	0.937500
spleen_male_adult_54_years	chr2	218734379	218734380	218734379	+	RAMPAGE_only	31	33	41	2.760034	4.826875	chr2	218734335	218734655	LINE|L2|L2b	-	chr2	218737573	218755416	TTLL4|ENST00000258398.8	+	218737573,218740057,218740520,218745108,218745690,218746154,218747002,218747289,218747596,218748104,218748835,218749252,218750008,218751703,218752762,218753114,218753583,218754133	218739163,218740167,218740584,218745233,218745801,218746231,218747194,218747372,218747725,218748227,218748934,218749387,218750146,218751806,218752973,218753185,218753669,218755416	0.609756
spleen_male_adult_54_years	chr2	113184979	113184989	113184988	+	High_confidence	9	9	24	1.615630	3.803509	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.958333
spleen_male_adult_54_years	chr6	79631273	79631329	79631328	+	High_confidence	39	41	116	7.808878	5.850676	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.948276
spleen_male_adult_54_years	chr14	38880996	38881002	38881001	-	RAMPAGE_only	27	28	49	3.298578	4.970176	chr14	38880649	38881113	LTR|ERVL-MaLR|MLT1F2	-	chr14	38749338	38916882	LINC00639|NR_039982.1	-	38749338,38835230,38835541,38890740,38916781	38749654,38835398,38839204,38890798,38916882	0.653061
spleen_male_adult_54_years	chr12	53113498	53113499	53113498	-	RAMPAGE_only	4	4	7	0.471225	2.521641	chr12	53113072	53113540	LTR|ERV1|PABL_A-int	-	chr12	53106638	53108082	STRG.99826.1	-	53106638	53108082	0.571429
spleen_male_adult_54_years	chr5	173746219	173746225	173746219	-	High_confidence	9	9	15	1.009769	3.056565	chr5	173745880	173746596	LTR|ERV1|MER4A	+	chr5	173719245	173746211	LINC01484|ENST00000518902.1	-	173719245,173746019	173719543,173746211	1.000000
spleen_male_adult_54_years	chr4	85514988	85515025	85515024	+	RAMPAGE_only	10	10	24	1.615630	4.084963	chr4	85514854	85515090	LTR|ERVL|LTR16C	-	chr4	85475237	85972367	ARHGAP24|ENST00000503995.5	+	85475237,85570521,85721884,85923647,85942065,85972035	85475559,85570721,85721972,85923770,85942273,85972367	0.666667
spleen_male_adult_54_years	chrX	153487611	153487630	153487628	-	RAMPAGE_only	4	6	13	0.875133	3.238901	chrX	153487559	153487609	SINE|MIR|MIR3	-	chrX	153461559	153495516	HAUS7|ENST00000370210.3	-	153461559,153462609,153464987,153469145,153470449,153495373	153462067,153462671,153465055,153469261,153471145,153495516	1.000000
spleen_male_adult_54_years	chr3	9109558	9109599	9109598	-	RAMPAGE_only	5	5	20	1.346358	3.511085	chr3	9109543	9109955	LINE|L2|L2c	-	chr3	9006978	9124977	SRGAP3|ENST00000618999.4	-	9006978,9010307,9013307,9013736,9014741,9015596,9025260,9026934,9028099,9032649,9038062,9047390,9049260,9053026,9056232,9058250,9060230,9064395,9080024,9104679,9124724	9008347,9010387,9013535,9013842,9014841,9015731,9025338,9026995,9028130,9032752,9038090,9047475,9049469,9053224,9056334,9058472,9060359,9064581,9080087,9104842,9124977	0.850000
spleen_male_adult_54_years	chr12	643625	643636	643627	-	High_confidence	13	22	42	2.827352	4.997677	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.595238
spleen_male_adult_54_years	chr5	109952014	109952030	109952014	+	High_confidence	5	5	26	1.750266	4.418296	chr5	109951861	109952212	LTR|ERVL-MaLR|MLT1A0	+	chr5	109952041	109952866	STRG.48076.1	+	109952041	109952866	0.653846
spleen_male_adult_54_years	chr14	73463474	73463480	73463479	-	High_confidence	3	3	6	0.403907	2.584963	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73323129	73463625	STRG.111412.18	-	73323129,73355625,73366896,73409936,73462528,73463474	73323204,73355766,73366981,73410068,73462689,73463625	0.666667
spleen_male_adult_54_years	chrY	21175076	21175113	21175112	+	High_confidence	3	3	14	0.942451	3.664498	chrY	21174815	21175167	LTR|ERVK|HERVK22-int	+	chrY	21174718	21175937	STRG.148409.1	+	21174718	21175937	0.642857
spleen_male_adult_54_years	chr12	110688657	110688658	110688657	-	High_confidence	7	7	7	0.471225	2.521641	chr12	110688571	110688794	SINE|MIR|MIRc	+	chr12	110648796	110688709	HVCN1|ENST00000356742.9	-	110648796,110650167,110651216,110655233,110661163,110683224,110687974	110649475,110650280,110651448,110655338,110661448,110683264,110688709	1.000000
spleen_male_adult_54_years	chr10	65570629	65570651	65570650	+	High_confidence	11	11	21	1.413676	4.121928	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570535	65585775	LINC01515|ENST00000608678.5	+	65570535,65571424,65572934,65581611,65585484	65570759,65571579,65573056,65581673,65585775	0.666667
spleen_male_adult_54_years	chr1	49257817	49257823	49257817	-	RAMPAGE_only	7	7	23	1.548312	3.477175	chr1	49257178	49257818	LINE|L1|L1PA3	-	chr1	48817506	50023900	AGBL4|ENST00000371836.1	-	48817506,48867190,49045583,49245769,49697312,49851395,50023762	48818222,48867230,49045800,49245864,49697437,49851518,50023900	0.695652
spleen_male_adult_54_years	chr13	84086738	84086760	84086738	+	RAMPAGE_only	5	6	23	1.548312	3.729446	chr13	84085604	84086932	LTR|ERV1|LTR12C	-	chr13	84140601	84606768	LINC00333|NR_046871.1	+	84140601,84238539,84242062,84562363,84562608,84562791,84606705	84140643,84238600,84242097,84562463,84562676,84563234,84606768	0.608696
spleen_male_adult_54_years	chr7	102973265	102973291	102973265	-	High_confidence	125	127	187	12.588450	6.097349	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102883571	102973219	FBXL13|ENST00000477915.5	-	102883571,102884213,102913085,102926273,102963532,102968021,102973149	102883685,102884312,102913215,102926374,102963665,102968117,102973219	0.561497
spleen_male_adult_54_years	chr17	64393177	64393184	64393183	-	RAMPAGE_only	5	5	9	0.605861	3.000000	chr17	64392994	64393185	LTR|ERV1|MER51D	+	chr17	64319414	64390878	PECAM1|NM_000442.4	-	64319414,64329699,64341633,64348259,64350379,64352389,64353490,64354932,64356110,64360139,64363148,64369749,64375050,64377823,64390488,64390601	64323845,64329722,64341690,64348322,64350433,64352463,64353518,64355040,64356398,64360415,64363397,64370025,64375356,64378117,64390515,64390878	0.888889
spleen_male_adult_54_years	chr16	81664337	81664344	81664343	+	RAMPAGE_only	10	10	23	1.548312	3.249460	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.913043
spleen_male_adult_54_years	chr14	24308739	24308743	24308742	-	RAMPAGE_only	4	4	8	0.538543	2.500000	chr14	24308661	24308745	LTR|ERVL|LTR16E1	+	chr14	24305186	24311370	CIDEB|NM_014430.2	-	24305186,24305946,24306373,24307370,24307817,24308478,24310648	24305765,24306137,24306523,24307515,24307920,24308830,24311370	1.000000
spleen_male_adult_54_years	chr5	133089637	133089678	133089677	+	RAMPAGE_only	27	27	48	3.231260	5.256717	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.958333
spleen_male_adult_54_years	chr17	2667165	2667196	2667195	+	High_confidence	5	6	16	1.077087	3.875000	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.937500
spleen_male_adult_54_years	chr12	8567805	8567815	8567814	-	High_confidence	4	4	10	0.673179	3.121928	chr12	8567561	8568746	LTR|ERV1|MER52C	-	chr12	8534580	8567928	STRG.97129.1	-	8534580,8536089,8537114,8539216,8539854,8540760,8567493	8534809,8536205,8537266,8539306,8539947,8541055,8567928	0.900000
spleen_male_adult_54_years	chr13	50715096	50715097	50715096	-	High_confidence	10	10	12	0.807815	3.084963	chr13	50714806	50715412	LTR|ERVL-MaLR|MLT1E2	-	chr13	50711007	50715483	DLEU7|ENST00000443723.1	-	50711007,50715425	50713240,50715483	0.583333
spleen_male_adult_54_years	chr12	8788252	8788253	8788252	+	High_confidence	56	58	64	4.308346	5.147682	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.953125
spleen_male_adult_54_years	chr10	46269603	46269634	46269606	-	High_confidence	24	48	112	7.539606	5.841726	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.866071
spleen_male_adult_54_years	chr19	6469597	6469598	6469597	-	High_confidence	7	8	9	0.605861	2.750000	chr19	6469334	6469583	SINE|Alu|AluJo	-	chr19	6467949	6469651	DENND1C|ENST00000591795.1	-	6467949,6468845,6469595	6468645,6468953,6469651	0.888889
spleen_male_adult_54_years	chr1	111128023	111128033	111128032	-	High_confidence	15	15	36	2.423445	4.159799	chr1	111127946	111128007	DNA|hAT-Charlie|Charlie7a	-	chr1	111118123	111128027	DRAM2|ENST00000461449.5	-	111118123,111118804,111119876,111120515,111126226,111127982	111118267,111118897,111119959,111120693,111126294,111128027	0.527778
spleen_male_adult_54_years	chr13	106561950	106561951	106561950	-	High_confidence	9	9	9	0.605861	2.725481	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	1.000000
spleen_male_adult_54_years	chr19	46733430	46733461	46733460	-	High_confidence	15	15	42	2.827352	4.521829	chr19	46733275	46733512	LINE|L1|L1MC	+	chr19	46727906	46733449	STRN4|ENST00000594847.6	-	46727906,46728617,46730731,46733038	46728007,46728777,46730873,46733449	0.976190
spleen_male_adult_54_years	chr1	8826199	8826202	8826199	-	RAMPAGE_only	4	4	8	0.538543	2.521641	chr1	8825826	8826275	LTR|ERVL-MaLR|MLT1M	-	chr1	8354625	8817643	RERE|ENST00000400908.6	-	8354625,8355418,8356099,8358195,8359763,8360111,8361762,8362682,8364055,8364745,8365811,8422726,8465924,8495062,8497404,8508626,8541213,8556474,8557417,8614560,8624309,8655972,8817159	8355120,8355599,8356246,8358916,8359986,8361490,8361876,8362844,8364255,8364838,8365974,8422807,8466023,8495162,8497529,8508675,8541318,8556571,8557523,8614686,8624380,8656441,8817643	0.625000
spleen_male_adult_54_years	chr11	64226142	64226186	64226158	-	High_confidence	42	43	263	17.704611	6.581996	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.988593
spleen_male_adult_54_years	chr8	16186271	16186272	16186271	-	High_confidence	7	7	10	0.673179	3.169925	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.800000
spleen_male_adult_54_years	chr5	34244811	34244833	34244813	-	High_confidence	5	9	19	1.279040	3.511085	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.842105
spleen_male_adult_54_years	chr11	10806194	10806195	10806194	-	High_confidence	7	7	8	0.538543	2.807355	chr11	10806178	10806347	DNA|hAT-Charlie|MER5A	-	chr11	10804291	10806263	EIF4G2|ENST00000532152.5	-	10804291,10804912,10805906	10804418,10805015,10806263	0.750000
spleen_male_adult_54_years	chr9	123652014	123652015	123652014	-	RAMPAGE_only	7	7	7	0.471225	2.521641	chr9	123651992	123652144	DNA|hAT-Ac|OldhAT1	-	chr9	123401809	123676791	DENND1A|ENST00000394215.6	-	123401809,123403401,123440359,123450692,123452275,123454738,123457347,123457792,123557569,123583168,123609435,123630375,123652012,123667025,123671290,123676719	123401912,123403490,123440491,123450749,123452347,123454779,123457435,123457897,123557695,123583270,123609481,123630476,123652123,123667079,123671371,123676791	1.000000
spleen_male_adult_54_years	chr22	24011756	24011757	24011756	+	High_confidence	11	11	11	0.740497	2.550341	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
spleen_male_adult_54_years	chr14	75025221	75025258	75025243	-	RAMPAGE_only	5	5	27	1.817584	3.940073	chr14	75025064	75026121	LINE|L2|L2c	+	chr14	75015486	75023018	MLH3|ENST00000554697.5	-	75015486,75017007,75018828,75022813,75022994	75015862,75017201,75018980,75022892,75023018	0.851852
spleen_male_adult_54_years	chr12	31959178	31959234	31959178	+	High_confidence	26	26	90	6.058612	5.229825	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959369	31992834	KIAA1551|ENST00000541981.5	+	31959369,31960776,31992377	31959491,31960871,31992834	0.722222
spleen_male_adult_54_years	chr17	7342423	7342470	7342469	+	High_confidence	3	3	10	0.673179	3.169925	chr17	7342483	7342617	SINE|Alu|AluJb	+	chr17	7342194	7344123	ACAP1|ENST00000573893.5	+	7342194,7342415,7343378,7343705,7343860,7344048	7342328,7342474,7343562,7343750,7343956,7344123	0.800000
spleen_male_adult_54_years	chr2	6866532	6866553	6866552	-	High_confidence	10	10	19	1.279040	3.794653	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.684211
spleen_male_adult_54_years	chr12	77382350	77382411	77382392	+	RAMPAGE_only	8	13	39	2.625399	4.406821	chr12	77382299	77382511	DNA|hAT-Charlie|MER20	-	chr12	77324872	77572421	STRG.101323.1	+	77324872,77571858	77325214,77572421	0.564103
spleen_male_adult_54_years	chr7	93145851	93145852	93145851	-	RAMPAGE_only	13	13	13	0.875133	3.546594	chr7	93145828	93146581	LINE|L2|L2a	+	chr7	93131032	93148345	STRG.65554.5	-	93131032,93144731,93145384,93146882	93135991,93144833,93146040,93148345	1.000000
spleen_male_adult_54_years	chrX	136639661	136639692	136639661	+	High_confidence	5	5	27	1.817584	3.708048	chrX	136639709	136639834	SINE|MIR|MIR3	+	chrX	136639666	136642426	LINC00892|ENST00000429841.1	+	136639666,136640773,136642102	136639804,136640840,136642426	0.925926
spleen_male_adult_54_years	chr8	85378112	85378113	85378112	-	High_confidence	678	711	717	48.266944	5.194158	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.969317
spleen_male_adult_54_years	chr15	34588448	34588453	34588448	-	High_confidence	6	6	16	1.077087	3.577820	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.562500
spleen_male_adult_54_years	chr14	23699470	23699476	23699470	+	High_confidence	184	201	349	23.493952	6.955220	chr14	23699385	23700234	LTR|ERV1|LTR1D1	-	chr14	23699463	23705162	STRG.108342.1	+	23699463,23701550,23703659	23699531,23701714,23705162	0.905444
spleen_male_adult_54_years	chr5	91311823	91311852	91311823	-	RAMPAGE_only	3	3	11	0.740497	3.277613	chr5	91311782	91311955	SINE|5S-Deu-L2|AmnSINE1	+	chr5	91310626	91313675	LUCAT1|ENST00000649539.1	-	91310626,91313077,91313637	91312495,91313229,91313675	1.000000
spleen_male_adult_54_years	chr3	81986175	81986176	81986175	+	High_confidence	7	8	10	0.673179	2.725481	chr3	81986020	81986349	LTR|ERV1|MER61A	+	chr3	81986151	82202454	LINC02008|ENST00000494340.1	+	81986151,82042724,82185351,82202328	81986381,82042790,82185453,82202454	0.500000
spleen_male_adult_54_years	chrX	155612337	155612371	155612359	+	High_confidence	9	11	29	1.952219	4.254196	chrX	155612307	155612443	SINE|MIR|MIR3	-	chrX	155612374	155782211	STRG.147752.1	+	155612374,155767961,155773765	155612647,155768136,155782211	0.896552
spleen_male_adult_54_years	chr3	151539250	151539271	151539265	-	RAMPAGE_only	7	9	21	1.413676	3.326360	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.809524
spleen_male_adult_54_years	chr2	28997506	28997514	28997506	+	High_confidence	6	6	11	0.740497	2.721928	chr2	28997313	28997521	LINE|L2|L2b	+	chr2	28997381	29017253	STRG.14442.1	+	28997381,28998090,28999180,29002535,29003491,29011454,29014394,29015600,29017153	28997666,28998253,28999468,29002747,29003682,29011501,29014561,29015677,29017253	0.909091
spleen_male_adult_54_years	chr19	18938355	18938356	18938355	-	High_confidence	11	11	11	0.740497	3.095795	chr19	18938201	18938361	SINE|MIR|MIR3	-	chr19	18929438	18938982	HOMER3|ENST00000594439.5	-	18929438,18931324,18931508,18931975,18932923,18938352,18938727,18938968	18929634,18931411,18931625,18932132,18933045,18938484,18938884,18938982	1.000000
spleen_male_adult_54_years	chr10	93431448	93431476	93431452	-	RAMPAGE_only	4	4	12	0.807815	2.855389	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	1.000000
spleen_male_adult_54_years	chr19	39335658	39335673	39335658	-	High_confidence	3	3	11	0.740497	3.321928	chr19	39335628	39335746	DNA|hAT-Tip100|MER91A	-	chr19	39328358	39335531	GMFG|ENST00000596583.5	-	39328358,39328999,39329547,39333076,39335434	39328548,39329073,39329626,39333126,39335531	0.636364
spleen_male_adult_54_years	chr6	132756565	132756614	132756594	-	RAMPAGE_only	2	2	8	0.538543	2.750000	chr6	132756221	132756891	LINE|L2|L2a	+	chr6	132743869	132757883	VNN2|ENST00000418593.6	-	132743869,132749694,132751144,132752672,132755842,132757415,132757670	132744491,132749865,132751518,132752749,132756035,132757546,132757883	0.500000
spleen_male_adult_54_years	chr3	151539315	151539328	151539315	-	RAMPAGE_only	2	2	7	0.471225	2.584963	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.571429
spleen_male_adult_54_years	chr2	29114136	29114162	29114161	+	High_confidence	3	3	9	0.605861	2.750000	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.888889
spleen_male_adult_54_years	chr2	218734438	218734444	218734438	+	RAMPAGE_only	8	8	20	1.346358	3.932138	chr2	218734335	218734655	LINE|L2|L2b	-	chr2	218737573	218755416	TTLL4|ENST00000258398.8	+	218737573,218740057,218740520,218745108,218745690,218746154,218747002,218747289,218747596,218748104,218748835,218749252,218750008,218751703,218752762,218753114,218753583,218754133	218739163,218740167,218740584,218745233,218745801,218746231,218747194,218747372,218747725,218748227,218748934,218749387,218750146,218751806,218752973,218753185,218753669,218755416	0.700000
spleen_male_adult_54_years	chr6	2881635	2881668	2881635	-	High_confidence	12	12	26	1.750266	4.623517	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.769231
spleen_male_adult_54_years	chr19	9140393	9140428	9140427	+	High_confidence	37	37	130	8.751329	5.762091	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.815385
spleen_male_adult_54_years	chr10	17216310	17216311	17216310	-	RAMPAGE_only	11	11	14	0.942451	3.180833	chr10	17216274	17216354	LTR|ERV1|HERVIP10FH-int	+	chr10	17214238	17226898	VIM-AS1|ENST00000437232.5	-	17214238,17216166,17217601,17226855	17215364,17216274,17217675,17226898	0.857143
spleen_male_adult_54_years	chr11	64799884	64799914	64799896	-	High_confidence	5	5	22	1.480994	3.880180	chr11	64799729	64799896	SINE|MIR|MIR	-	chr11	64789888	64799659	MAP4K2|ENST00000489952.5	-	64789888,64790187,64790393,64791908,64792171,64796272,64796492,64796633,64796808,64796981,64797103,64797274,64797500,64797625,64798793,64799420,64799604	64789959,64790274,64790462,64792086,64792422,64796390,64796553,64796713,64796893,64797023,64797192,64797380,64797534,64797664,64798837,64799479,64799659	0.818182
spleen_male_adult_54_years	chr9	452093	452110	452109	+	RAMPAGE_only	6	6	14	0.942451	2.931209	chr9	452151	452338	DNA|hAT-Charlie|MER5A	+	chr9	463554	465247	DOCK8|ENST00000462618.1	+	463554,464158,465072	463687,464278,465247	0.785714
spleen_male_adult_54_years	chrX	7147265	7147288	7147287	+	High_confidence	9	9	18	1.211722	3.969816	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.888889
spleen_male_adult_54_years	chr7	128648830	128648861	128648852	+	RAMPAGE_only	3	3	11	0.740497	3.095795	chr7	128648764	128648951	SINE|Alu|AluJb	-	chr7	128641240	128660998	LINC01000|NR_024368.1	+	128641240,128642216,128648791,128651037,128651188	128641379,128642281,128648982,128651095,128660998	0.909091
spleen_male_adult_54_years	chr17	59723348	59723352	59723351	+	RAMPAGE_only	4	4	9	0.605861	2.725481	chr17	59723262	59723941	LINE|L2|L2	-	chr17	59729714	59737517	VMP1|ENST00000587259.5	+	59729714,59731420,59735337,59737452	59730017,59731522,59735473,59737517	0.555556
spleen_male_adult_54_years	chr20	5010312	5010313	5010312	-	High_confidence	111	112	116	7.808878	6.028474	chr20	5010113	5010529	LTR|ERVL|MLT2B2	-	chr20	4852355	5010293	SLC23A2|ENST00000379333.5	-	4852355,4859288,4861947,4862777,4867769,4869905,4873935,4874575,4883641,4884752,4885820,4899554,4902441,4912879,4932454,4970792,5010181	4857204,4859384,4862085,4862907,4867875,4870053,4874092,4874696,4883823,4884823,4885909,4899712,4902558,4912978,4932716,4970919,5010293	0.758621
spleen_male_adult_54_years	chr7	45940637	45940660	45940659	+	RAMPAGE_only	8	8	33	2.221491	3.952820	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45969656	45980191	AC073115.2|ENST00000416708.1	+	45969656,45978349,45979908	45969809,45978468,45980191	0.545455
spleen_male_adult_54_years	chr2	218392712	218392773	218392712	+	High_confidence	4	4	24	1.615630	3.970573	chr2	218392657	218392750	SINE|MIR|MIRc	-	chr2	218392589	218394635	SLC11A1|ENST00000490536.1	+	218392589,218394119	218393130,218394635	0.666667
spleen_male_adult_54_years	chr16	75306556	75306557	75306556	-	High_confidence	7	7	9	0.605861	2.503258	chr16	75306534	75306719	SINE|MIR|MIRc	-	chr16	75293697	75306545	CFDP1|ENST00000570103.5	-	75293697,75305023,75306386	75294042,75305182,75306545	1.000000
spleen_male_adult_54_years	chr12	106249062	106249063	106249062	-	High_confidence	8	8	11	0.740497	3.095795	chr12	106249007	106249196	SINE|MIR|MIRb	-	chr12	106248540	106249050	STRG.102672.1	-	106248540	106249050	0.727273
spleen_male_adult_54_years	chr2	87829615	87829616	87829615	-	RAMPAGE_only	7	8	8	0.538543	2.521641	chr2	87829441	87829814	LTR|ERVL-MaLR|THE1B	-	chr2	87755954	87825952	RGPD2|ENST00000398146.3	-	87755954,87772168,87774943,87782123,87785074,87788721,87791989,87792161,87793221,87793630,87794034,87795116,87795407,87795666,87797964,87800604,87806695,87811484,87811975,87816268,87816865,87818558,87825657	87757426,87772364,87775083,87784347,87785169,87788839,87792073,87792341,87793368,87793768,87794193,87795240,87795583,87795848,87798174,87800692,87806891,87811630,87812206,87816421,87816977,87818623,87825952	0.875000
spleen_male_adult_54_years	chr22	49657348	49657484	49657483	-	High_confidence	13	13	116	7.808878	6.208979	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49648968	49657498	STRG.141997.4	-	49648968	49657498	0.698276
spleen_male_adult_54_years	chr19	9700673	9700674	9700673	-	High_confidence	34	34	34	2.288809	3.473617	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.882353
spleen_male_adult_54_years	chr7	30579238	30579279	30579278	-	RAMPAGE_only	5	5	12	0.807815	2.625815	chr7	30578715	30579253	LTR|ERV1|LOR1-int	-	chr7	30548356	30577779	LOC401320|NR_038889.1	-	30548356,30552099,30561465,30563730,30568832,30576563,30577648	30550781,30552179,30562128,30563998,30568989,30576710,30577779	0.500000
spleen_male_adult_54_years	chr2	28997439	28997472	28997439	+	High_confidence	2	2	10	0.673179	2.921928	chr2	28997313	28997521	LINE|L2|L2b	+	chr2	28997381	29017253	STRG.14442.1	+	28997381,28998090,28999180,29002535,29003491,29011454,29014394,29015600,29017153	28997666,28998253,28999468,29002747,29003682,29011501,29014561,29015677,29017253	0.600000
spleen_male_adult_54_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	19	19	19	1.279040	3.511085	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
spleen_male_adult_54_years	chr1	176162936	176162963	176162936	-	RAMPAGE_only	13	14	25	1.682948	3.914866	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.800000
spleen_male_adult_54_years	chr5	78549152	78549173	78549152	-	High_confidence	3	3	8	0.538543	2.521641	chr5	78548966	78549452	LTR|ERVL-MaLR|MLT1H	-	chr5	78485214	78549151	LHFPL2|ENST00000515007.6	-	78485214,78509783,78549025	78489153,78510398,78549151	0.500000
spleen_male_adult_54_years	chr2	164761355	164761404	164761355	-	RAMPAGE_only	21	22	129	8.684011	5.889900	chr2	164761126	164761399	SINE|Alu|AluSp	+	chr2	164722305	164773754	COBLL1|ENST00000452626.5	-	164722305,164722424,164727968,164729913,164743686,164773706	164722311,164722522,164728197,164730115,164743875,164773754	0.736434
spleen_male_adult_54_years	chr11	1870255	1870314	1870255	+	High_confidence	11	11	49	3.298578	5.240655	chr11	1870205	1870284	SINE|MIR|MIRb	-	chr11	1870251	1892263	LSP1|NM_001289005.1	+	1870251,1880086,1881431,1883418,1883931,1884279,1884499,1886731,1887236,1887473,1891772	1870661,1880224,1881596,1883560,1884024,1884323,1884581,1886866,1887314,1887576,1892263	0.816327
spleen_male_adult_54_years	chr16	66408519	66408542	66408538	+	High_confidence	8	8	36	2.423445	4.514718	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.750000
spleen_male_adult_54_years	chr13	24284178	24284225	24284203	+	RAMPAGE_only	5	5	24	1.615630	4.061482	chr13	24284180	24284220	LINE|CR1|L3	+	chr13	24270718	24303904	STRG.104194.6	+	24270718,24278613,24284134,24286213,24286764,24288998,24294738,24297362,24300400	24273137,24278821,24284271,24286393,24286950,24290884,24294868,24297735,24303904	0.916667
spleen_male_adult_54_years	chr6	118651542	118651602	118651592	-	High_confidence	54	54	265	17.839247	6.765425	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.977358
spleen_male_adult_54_years	chr1	27617479	27617480	27617479	-	RAMPAGE_only	7	7	8	0.538543	2.807355	chr1	27617360	27617508	SINE|MIR|MIRb	+	chr1	27612299	27624062	FGR|ENST00000374004.5	-	27612299,27613218,27614429,27614849,27615433,27615688,27616856,27617192,27621558,27623041,27623690	27613122,27613350,27614583,27614926,27615613,27615844,27617006,27617296,27621657,27623144,27624062	0.625000
spleen_male_adult_54_years	chr4	142566073	142566076	142566075	+	High_confidence	5	8	9	0.605861	2.500000	chr4	142566070	142566604	LINE|L2|L2c	-	chr4	142566018	142660950	AC139720.1|ENST00000509497.1	+	142566018,142583451,142660782	142566190,142583623,142660950	0.666667
spleen_male_adult_54_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	20	20	20	1.346358	3.103702	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
spleen_male_adult_54_years	chr6	109325708	109325743	109325708	+	RAMPAGE_only	24	24	75	5.048844	5.429771	chr6	109324446	109326053	LINE|L2|L2a	-	chr6	109294308	109355046	CCDC162P|ENST00000638844.1	+	109294308,109295526,109300230,109305958,109307981,109309501,109314062,109315279,109316847,109329002,109336367,109337395,109338447,109340901,109341301,109342398,109343986,109348426,109352786,109354847	109294458,109295692,109300369,109306112,109308077,109309654,109314292,109315418,109316968,109329112,109336517,109337449,109338615,109341054,109341433,109342551,109344196,109348547,109352914,109355046	0.640000
spleen_male_adult_54_years	chr4	15682497	15682498	15682497	-	RAMPAGE_only	31	32	40	2.692717	4.859641	chr4	15682367	15682517	LINE|L1|L1ME3C	-	chr4	15681236	15700263	STRG.36750.1	-	15681236,15700217	15682114,15700263	0.725000
spleen_male_adult_54_years	chr20	50274855	50274897	50274885	-	High_confidence	5	5	18	1.211722	3.308271	chr20	50274842	50274932	SINE|MIR|MIR3	-	chr20	50274463	50274902	STRG.136934.1	-	50274463	50274902	0.833333
spleen_male_adult_54_years	chr8	11864387	11864409	11864387	-	RAMPAGE_only	7	7	17	1.144405	3.750000	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.647059
spleen_male_adult_54_years	chr2	86542789	86542826	86542825	-	High_confidence	2	3	9	0.605861	3.169925	chr2	86542589	86542892	DNA|hAT-Charlie|Charlie2a	+	chr2	86505928	86542847	CHMP3|ENST00000409810.6	-	86505928,86507478,86510357,86529217,86542251,86542787	86505949,86507593,86510479,86529397,86542312,86542847	0.666667
spleen_male_adult_54_years	chr1	157898282	157898283	157898282	-	RAMPAGE_only	20	20	23	1.548312	3.879664	chr1	157898124	157898479	LTR|ERVL-MaLR|THE1A	-	chr1	157830913	157841844	CD5L|NM_005894.2	-	157830913,157833191,157834406,157835834,157839383,157841673	157831968,157833512,157834748,157836155,157839410,157841844	0.608696
spleen_male_adult_54_years	chr8	23243634	23243635	23243634	+	High_confidence	60	60	66	4.442982	5.584345	chr8	23243551	23243732	LTR|ERV1|LTR21A	+	chr8	23243636	23262000	CHMP7|NM_152272.4	+	23243636,23246255,23249209,23255246,23256459,23258032,23258329,23258731,23259065,23260143,23260537	23243844,23246994,23249381,23255432,23256593,23258081,23258449,23258830,23259126,23260323,23262000	0.818182
spleen_male_adult_54_years	chr19	48637367	48637379	48637367	-	High_confidence	10	10	19	1.279040	3.794653	chr19	48637310	48637367	LINE|L1|X9_LINE	+	chr19	48633085	48637363	DBP|ENST00000601104.1	-	48633085,48635579,48636855	48633655,48635990,48637363	0.894737
spleen_male_adult_54_years	chr10	30999446	30999520	30999519	-	High_confidence	118	136	424	28.542795	7.570683	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30995842	31000024	STRG.84384.3	-	30995842	31000024	0.500000
spleen_male_adult_54_years	chr9	137738690	137738720	137738712	+	High_confidence	6	6	18	1.211722	3.969816	chr9	137738221	137739080	LINE|L1|L1MB3	+	chr9	137738606	137754221	EHMT1|ENST00000495657.5	+	137738606,137743370,137743901,137752330,137754170	137738779,137743528,137744090,137752408,137754221	0.944444
spleen_male_adult_54_years	chr1	153967486	153967501	153967486	+	High_confidence	9	9	24	1.615630	2.938722	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.958333
spleen_male_adult_54_years	chr2	191682483	191682501	191682483	+	RAMPAGE_only	2	2	8	0.538543	2.750000	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191686157	STRG.23012.9	+	191678989,191681945,191684229,191685598	191679128,191683804,191684296,191686157	1.000000
spleen_male_adult_54_years	chr2	217277924	217277980	217277979	+	High_confidence	168	169	533	35.880448	6.000269	chr2	217277834	217277987	SINE|MIR|MIR3	-	chr2	217277658	217311372	STRG.24128.1	+	217277658,217282714,217296631,217302685,217309711	217278272,217282809,217296770,217302785,217311372	0.945591
spleen_male_adult_54_years	chr3	157487448	157487449	157487448	-	RAMPAGE_only	10	12	12	0.807815	3.084963	chr3	157486755	157488128	LINE|L1|L1ME3C	+	chr3	157460094	157489356	VEPH1|ENST00000482434.1	-	157460094,157470313,157489054	157460355,157470529,157489356	0.750000
spleen_male_adult_54_years	chr4	75980756	75980792	75980783	+	RAMPAGE_only	130	146	415	27.936934	7.079283	chr4	75980506	75980925	LTR|ERVL|LTR16A1	-	chr4	76011179	76112802	ART3|NM_001130017.2	+	76011179,76075880,76081823,76097643,76098954,76100290,76100794,76100989,76103936,76112385	76011320,76075958,76082535,76097676,76098987,76100320,76100824,76101019,76103969,76112802	0.506024
spleen_male_adult_54_years	chr18	46087042	46087066	46087042	-	High_confidence	6	6	12	0.807815	3.277613	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.750000
spleen_male_adult_54_years	chr9	20658312	20658349	20658312	+	High_confidence	13	13	64	4.308346	4.371672	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.843750
spleen_male_adult_54_years	chr16	28166758	28166841	28166840	-	RAMPAGE_only	14	15	64	4.308346	5.345714	chr16	28166799	28167174	LINE|L2|L2c	+	chr16	28156132	28165419	XPO6|ENST00000569973.1	-	28156132,28165270	28156527,28165419	0.531250
spleen_male_adult_54_years	chr2	36513728	36513758	36513735	+	High_confidence	5	6	22	1.480994	3.879664	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.818182
spleen_male_adult_54_years	chr15	89133449	89133457	89133456	+	RAMPAGE_only	8	8	21	1.413676	3.921928	chr15	89133190	89133834	LINE|L1|L1MC5	-	chr15	89116503	89183373	ABHD2|ENST00000562073.1	+	89116503,89151676,89155366,89175811,89183331	89116521,89151852,89155534,89175995,89183373	0.809524
spleen_male_adult_54_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	24	24	24	1.615630	4.053509	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
spleen_male_adult_54_years	chr12	14216627	14216636	14216635	+	High_confidence	3	4	8	0.538543	2.521641	chr12	14216543	14216731	LTR|ERV1|LTR12F	+	chr12	14216589	14221297	AC092112.1|ENST00000538329.1	+	14216589,14220861	14216793,14221297	0.875000
spleen_male_adult_54_years	chr1	6820167	6820198	6820197	+	RAMPAGE_only	4	5	13	0.875133	2.918296	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.615385
spleen_male_adult_54_years	chr9	434954	434957	434956	+	RAMPAGE_only	5	8	11	0.740497	3.027169	chr9	435004	435223	DNA|hAT-Charlie|MER20	+	chr9	425439	455671	STRG.77076.17	+	425439,428361,429701,432165,433874,434782,441874,443426,446369,449783,452010	426981,428496,429854,432324,433975,441417,442009,443516,446606,449927,455671	1.000000
spleen_male_adult_54_years	chr2	227534932	227534951	227534932	+	RAMPAGE_only	9	10	18	1.211722	3.614369	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.888889
spleen_male_adult_54_years	chr6	106098056	106098089	106098075	+	High_confidence	6	8	32	2.154173	4.348394	chr6	106098107	106098187	LINE|L2|L2	+	chr6	106098605	106105038	PRDM1|ENST00000450060.5	+	106098605,106099299,106104824	106098721,106099552,106105038	0.562500
spleen_male_adult_54_years	chr8	141143960	141143996	141143995	+	High_confidence	8	9	20	1.346358	3.784184	chr8	141143796	141144020	LINE|L1|L1ME3A	-	chr8	141143913	141150889	DENND3|ENST00000523015.1	+	141143913,141150833	141144259,141150889	0.950000
spleen_male_adult_54_years	chr12	31887192	31887220	31887216	-	High_confidence	26	35	93	6.260566	5.374164	chr12	31887197	31887704	LTR|ERV1|LOR1a	+	chr12	31876968	31887203	LOC105369723|NR_135029.1	-	31876968,31887166	31877893,31887203	0.548387
spleen_male_adult_54_years	chr3	12994717	12994748	12994747	-	High_confidence	3	3	7	0.471225	2.521641	chr3	12994635	12994703	SINE|MIR|MIRc	-	chr3	12908348	12994384	IQSEC1|ENST00000648386.1	-	12908348,12909272,12911628,12913427,12915103,12915593,12920429,12922119,12924580,12935447,12941570,12994080	12908525,12909434,12911728,12913553,12915133,12915733,12920596,12922242,12924742,12936697,12941865,12994384	0.571429
spleen_male_adult_54_years	chr1	155679929	155679930	155679929	-	High_confidence	8	9	9	0.605861	2.500000	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	0.888889
spleen_male_adult_54_years	chr19	54572987	54573002	54573001	+	High_confidence	19	19	37	2.490763	4.574054	chr19	54572997	54573273	SINE|Alu|AluJr	-	chr19	54572996	54587560	LILRA2|NM_006866.3	+	54572996,54573697,54574075,54574300,54574730,54575255,54575806,54587200	54573435,54573912,54574111,54574582,54575033,54575552,54576109,54587560	0.675676
spleen_male_adult_54_years	chr12	27579347	27579392	27579347	+	RAMPAGE_only	4	4	18	1.211722	3.392147	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.833333
spleen_male_adult_54_years	chr16	12539371	12539372	12539371	+	High_confidence	7	7	8	0.538543	2.521641	chr16	12539107	12540236	LINE|L1|L1MD3	-	chr16	12539245	12574276	STRG.119576.5	+	12539245,12568505	12539416,12574276	0.875000
spleen_male_adult_54_years	chr5	151687244	151687251	151687244	-	High_confidence	7	7	12	0.807815	3.277613	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.916667
spleen_male_adult_54_years	chr8	144012228	144012282	144012228	+	High_confidence	13	13	46	3.096624	4.897081	chr8	144011998	144012361	LINE|L2|L2b	-	chr8	144012261	144041107	STRG.76866.1	+	144012261,144039908,144040567	144012726,144040463,144041107	0.934783
spleen_male_adult_54_years	chr12	70468078	70468123	70468122	+	High_confidence	7	7	24	1.615630	3.886842	chr12	70467961	70468294	LTR|ERV1|MER61A	+	chr12	70468122	70527749	AC025569.1|ENST00000549359.5	+	70468122,70507894,70510211,70513184,70520198,70527674	70468327,70508001,70510284,70513227,70520267,70527749	0.583333
spleen_male_adult_54_years	chr16	57039691	57039772	57039716	+	High_confidence	5	5	45	3.029306	5.058303	chr16	57039438	57039725	SINE|Alu|AluJb	+	chr16	57040687	57083524	NLRC5|ENST00000540182.5	+	57040687,57041484,57041981,57043514,57045447,57046551,57047544,57051537,57054750,57055031,57058064,57058971,57059466,57061447,57061617,57062158,57065211,57066533,57067386,57067735,57069835,57070534,57074599,57076818,57077295,57077718,57077942,57079049,57079220,57079545,57081097,57081526,57082416	57040718,57041574,57042065,57043604,57045492,57046641,57047628,57051621,57054840,57055094,57058148,57059061,57059532,57061531,57061701,57062173,57065298,57066614,57067470,57067828,57069919,57070618,57074683,57076902,57077379,57077802,57078020,57079133,57079292,57079629,57081181,57081610,57083524	0.511111
spleen_male_adult_54_years	chr8	27431398	27431399	27431398	+	High_confidence	9	11	11	0.740497	2.913977	chr8	27431334	27431403	LINE|RTE-BovB|MamRTE1	+	chr8	27430898	27452559	PTK2B|ENST00000397497.8	+	27430898,27432259,27433434,27434092,27434512,27435742,27436250,27437121,27437395,27437764,27439030,27439308,27440236,27442874,27444205,27450748,27451042,27451484	27431472,27432361,27433552,27434132,27434559,27435793,27436348,27437206,27437496,27437880,27439131,27439398,27440441,27442983,27444271,27450895,27451078,27452559	0.909091
spleen_male_adult_54_years	chr11	68180141	68180142	68180141	-	High_confidence	10	10	10	0.673179	2.721928	chr11	68180123	68180214	SINE|MIR|MIRc	+	chr11	68171118	68180165	KMT5B|ENST00000323599.10	-	68171118,68171231,68171542,68173803,68174087,68175017,68180131	68171151,68171251,68171709,68173913,68174210,68175183,68180165	1.000000
spleen_male_adult_54_years	chr16	3263796	3263843	3263842	+	High_confidence	17	18	147	9.895733	4.675565	chr16	3263871	3263932	SINE|MIR|MIRc	+	chr16	3263767	3267567	LINC00921|NR_033904.1	+	3263767,3267125	3265768,3267567	0.986395
spleen_male_adult_54_years	chr18	9588120	9588130	9588120	-	RAMPAGE_only	5	5	11	0.740497	3.095795	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9562922	9595061	STRG.128060.4	-	9562922,9563377,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9593767,9595017	9563046,9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9593874,9595061	1.000000
spleen_male_adult_54_years	chr7	131522774	131522790	131522774	-	RAMPAGE_only	4	5	12	0.807815	2.751629	chr7	131522684	131523276	LINE|L1|L1MB8	-	chr7	131500261	131556563	PODXL|ENST00000446198.5	-	131500261,131505867,131506259,131506578,131508950,131510827,131556259	131504508,131506035,131506321,131506726,131509585,131511433,131556563	1.000000
spleen_male_adult_54_years	chr5	50443278	50443319	50443318	-	High_confidence	30	32	89	5.991294	5.826582	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.640449
spleen_male_adult_54_years	chr5	119420316	119420348	119420337	+	RAMPAGE_only	3	3	14	0.942451	3.180833	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.500000
spleen_male_adult_54_years	chr9	117761120	117761165	117761120	+	High_confidence	2	2	9	0.605861	2.947703	chr9	117761091	117761612	LTR|ERVL-MaLR|MLT1H1	+	chr9	117761213	117877443	AL160272.1|ENST00000644180.1	+	117761213,117802980,117870088	117761449,117803142,117877443	0.555556
spleen_male_adult_54_years	chr16	70590319	70590335	70590328	+	RAMPAGE_only	87	87	249	16.762160	5.879431	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.883534
spleen_male_adult_54_years	chr3	197913268	197913296	197913295	-	High_confidence	11	11	25	1.682948	3.882045	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.920000
spleen_male_adult_54_years	chr2	127093742	127093743	127093742	-	RAMPAGE_only	8	8	11	0.740497	3.459432	chr2	127093177	127093806	LTR|ERV1|MER39	+	chr2	127048022	127084550	BIN1|NM_001320642.1	-	127048022,127050420,127050801,127051153,127052254,127053421,127053904,127057472,127059010,127062114,127063570,127063932,127068162,127068923,127069994,127070552,127070761,127076625,127083588	127048633,127050522,127050912,127051243,127052362,127053445,127054012,127057601,127059155,127062197,127063646,127064018,127068255,127069031,127070090,127070647,127070816,127076706,127084550	0.727273
spleen_male_adult_54_years	chr1	110871198	110871212	110871200	+	High_confidence	59	109	277	18.647062	6.516380	chr1	110870731	110871665	LINE|L2|L2b	-	chr1	110871198	110899936	CD53|NM_001040033.1	+	110871198,110873155,110891391,110892344,110894326,110894959,110896652,110897808,110899123	110871259,110873248,110891471,110892533,110894401,110895055,110896733,110897892,110899936	0.783394
spleen_male_adult_54_years	chr22	39021146	39021182	39021155	+	High_confidence	49	50	170	11.444045	5.550383	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
spleen_male_adult_54_years	chr3	36925056	36925084	36925056	-	RAMPAGE_only	5	5	13	0.875133	3.238901	chr3	36923610	36925588	LTR|ERV1|MER83A-int	+	chr3	36823150	36908518	STRG.27375.1	-	36823150,36829563,36830872,36834761,36838371,36838612,36842621,36846247,36847199,36851718,36852145,36855172,36858717,36860905,36864318,36874125,36889828,36892201,36892900,36895639,36899108,36903148,36908322	36828375,36829662,36833919,36834907,36838504,36838716,36842710,36846404,36847346,36851856,36852345,36858049,36858894,36861160,36864480,36874296,36889960,36892340,36892984,36895758,36899259,36903275,36908518	0.923077
spleen_male_adult_54_years	chr10	32446972	32446988	32446977	+	High_confidence	6	7	20	1.346358	3.241446	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	1.000000
spleen_male_adult_54_years	chr5	160412454	160412478	160412477	-	RAMPAGE_only	5	5	9	0.605861	2.641604	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160406348	160408421	SLU7|ENST00000520841.1	-	160406348,160407475,160407745,160407970,160408328	160406629,160407615,160407813,160408068,160408421	0.777778
spleen_male_adult_54_years	chr2	37617327	37617369	37617328	+	High_confidence	9	17	31	2.086855	4.215061	chr2	37617134	37617513	LTR|ERVL-MaLR|THE1C	+	chr2	37617349	37618123	STRG.14831.1	+	37617349	37618123	0.645161
spleen_male_adult_54_years	chr11	65440658	65440912	65440781	+	RAMPAGE_only	37	37	386	25.984715	5.814748	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.997409
spleen_male_adult_54_years	chr19	49867862	49867885	49867884	-	High_confidence	5	5	16	1.077087	3.773557	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49861203	49867886	PNKP|ENST00000322344.7	-	49861203,49861448,49861607,49861771,49862043,49862184,49862370,49862537,49862689,49863688,49863963,49864178,49864323,49865126,49866398,49867053,49867468	49861365,49861510,49861695,49861881,49862105,49862281,49862463,49862608,49862738,49863760,49864071,49864236,49864403,49865426,49866445,49867217,49867886	0.875000
spleen_male_adult_54_years	chr9	121281850	121281892	121281891	+	RAMPAGE_only	43	43	122	8.212785	5.728541	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121268167	121332589	STRG.82238.3	+	121268167,121281469,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121268219,121282550,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332589	0.926230
spleen_male_adult_54_years	chr17	75742748	75742759	75742748	+	High_confidence	4	4	12	0.807815	3.251629	chr17	75742779	75742995	SINE|MIR|MIRb	+	chr17	75742423	75749045	ITGB4|ENST00000584025.1	+	75742423,75743712,75746263,75748840	75742761,75743861,75746375,75749045	0.833333
spleen_male_adult_54_years	chr7	85106805	85106808	85106805	-	High_confidence	258	262	441	29.687200	6.777978	chr7	85106637	85107002	LTR|ERVL-MaLR|THE1D	-	chr7	84995552	85106856	STRG.65231.4	-	84995552,85006801,85012781,85015058,85018251,85020232,85022390,85036888,85040672,85042170,85055716,85065423,85068190,85072961,85081516,85097804,85106720	84999865,85006941,85012846,85015216,85018293,85020321,85022613,85037033,85040742,85042285,85055859,85065552,85068284,85073081,85081579,85097965,85106856	0.843537
spleen_male_adult_54_years	chr3	52518344	52518345	52518344	+	High_confidence	8	9	12	0.807815	3.251629	chr3	52518378	52518454	SINE|MIR|MIR3	+	chr3	52518800	52523476	STAB1|ENST00000481626.5	+	52518800,52519263,52519943,52520399,52520641,52521360,52521595,52521843,52522036,52522329,52522554,52522774,52523024,52523221,52523426	52518869,52519564,52520290,52520549,52521005,52521510,52521700,52521951,52522230,52522474,52522688,52522940,52523134,52523341,52523476	1.000000
spleen_male_adult_54_years	chr2	96256922	96256923	96256922	-	RAMPAGE_only	17	17	21	1.413676	3.821928	chr2	96256725	96256974	LINE|L1|HAL1	+	chr2	96253799	96260595	TMEM127|ENST00000435268.1	-	96253799,96254832,96260494	96254115,96254997,96260595	0.904762
spleen_male_adult_54_years	chr4	79493274	79493298	79493274	+	High_confidence	2	2	8	0.538543	3.000000	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492766	79513978	STRG.38405.2	+	79492766,79493151,79513784	79492774,79493585,79513978	0.500000
spleen_male_adult_54_years	chr2	143070964	143071000	143070964	+	RAMPAGE_only	323	327	483	32.514552	6.002501	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143091361	143238352	ARHGAP15|ENST00000409869.5	+	143091361,143092156,143155476,143202133,143216383,143228580,143235945	143091422,143092258,143155655,143202202,143216445,143228668,143238352	0.679089
spleen_male_adult_54_years	chr8	134572668	134572673	134572672	-	RAMPAGE_only	4	4	8	0.538543	2.521641	chr8	134572592	134572743	DNA|TcMar-Mariner|MARNA	-	chr8	134478024	134565671	ZFAT|ENST00000518408.5	-	134478024,134509618,134512474,134520882,134532833,134565332	134478721,134509749,134512601,134521001,134532972,134565671	0.500000
spleen_male_adult_54_years	chr15	88635654	88635661	88635654	+	High_confidence	120	121	316	21.272461	6.407738	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303234.1	+	88635636,88636166,88639342,88652109,88655414	88635700,88636292,88639594,88652310,88656344	0.731013
spleen_male_adult_54_years	chr1	20686354	20686404	20686403	-	High_confidence	20	20	61	4.106393	4.889331	chr1	20686389	20686457	SINE|MIR|MIR3	-	chr1	20670428	20686375	KIF17|ENST00000498225.1	-	20670428,20671937,20682652,20684808,20686045,20686343	20670488,20672196,20682884,20685020,20686126,20686375	0.934426
spleen_male_adult_54_years	chr1	36481508	36481535	36481534	-	RAMPAGE_only	12	13	23	1.548312	3.970573	chr1	36481405	36481665	SINE|MIR|MIR	+	chr1	36466117	36482899	STRG.1950.6	-	36466117,36467229,36467557,36467821,36468074,36469155,36469651,36471432,36472065,36472237,36472516,36473434,36473763,36475376,36481477,36482810	36466827,36467311,36467651,36467962,36468221,36469257,36469840,36471646,36472139,36472391,36472686,36473622,36473887,36479516,36481537,36482899	0.956522
spleen_male_adult_54_years	chr17	77127959	77127965	77127964	+	High_confidence	21	24	52	3.500532	5.286790	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.615385
spleen_male_adult_54_years	chr14	102235458	102235481	102235458	-	High_confidence	19	19	37	2.490763	3.638130	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.918919
spleen_male_adult_54_years	chr1	212138600	212138655	212138654	-	High_confidence	8	8	30	2.019537	3.676441	chr1	212138299	212139170	LTR|ERVL|ERV3-16A3_I-int	+	chr1	212137974	212138490	STRG.10769.1	-	212137974	212138490	0.666667
spleen_male_adult_54_years	chr9	131676834	131676841	131676834	-	High_confidence	10	15	36	2.423445	4.793345	chr9	131676817	131677003	DNA|hAT-Charlie|MER5A	+	chr9	131576808	131677046	STRG.82852.3	-	131576808,131580262,131582604,131584310,131584517,131587735,131587941,131588800,131589885,131592098,131596297,131598198,131602060,131621795,131625921,131627912,131628548,131629101,131630235,131638634,131643238,131650128,131650809,131676556	131579647,131580391,131582702,131584412,131584596,131587830,131588026,131588986,131589978,131592183,131596373,131598310,131602149,131621998,131626422,131628096,131628672,131629254,131630324,131638791,131643417,131650242,131650949,131677046	0.666667
spleen_male_adult_54_years	chr6	39819945	39819965	39819945	+	RAMPAGE_only	6	7	14	0.942451	3.085055	chr6	39819646	39819981	LTR|ERVL-MaLR|MLT1A0	-	chr6	39818750	39823227	AL592158.1|ENST00000632210.1	+	39818750	39823227	0.500000
spleen_male_adult_54_years	chr2	86826129	86826134	86826129	-	RAMPAGE_only	3	3	7	0.471225	2.584963	chr2	86826118	86826191	SINE|MIR|MIR1_Amn	+	chr2	86815346	86861915	CD8B|ENST00000393759.6	-	86815346,86822320,86844921,86846683,86852996,86858056,86861822	86815718,86822374,86844958,86846773,86853086,86858416,86861915	0.571429
spleen_male_adult_54_years	chr15	79004595	79004598	79004595	-	RAMPAGE_only	3	3	8	0.538543	2.750000	chr15	79004565	79004625	SINE|MIR|MIR1_Amn	-	chr15	78959946	79005660	RASGRF1|NM_153815.2	-	78959946,78971865,78973302,78980619,78985006,78990188,78991690,78995739,78998095,78998718,78999742,79001661,79003801,79004716	78962236,78971934,78973420,78980699,78985204,78990273,78991794,78995800,78998208,78998825,78999913,79001787,79004175,79005660	0.875000
spleen_male_adult_54_years	chr19	39341554	39341568	39341567	-	High_confidence	5	5	11	0.740497	3.121928	chr19	39340883	39341633	LINE|L2|L2	+	chr19	39328361	39342372	GMFG|ENST00000600322.5	-	39328361,39328999,39329543,39333076,39335260,39335434,39342291	39328548,39329073,39329626,39333126,39335310,39335531,39342372	0.909091
spleen_male_adult_54_years	chr11	108223501	108223517	108223516	+	High_confidence	5	5	9	0.605861	2.750000	chr11	108223533	108223589	SINE|MIR|MIR	+	chr11	108223102	108236534	ATM|ENST00000530958.5	+	108223102,108227775,108229177,108235669	108227696,108227888,108229323,108236534	0.888889
spleen_male_adult_54_years	chr6	119491270	119491311	119491301	-	High_confidence	67	71	342	23.022726	6.469177	chr6	119489191	119492975	LINE|L1|L1PB1	+	chr6	119474537	119491294	STRG.57702.2	-	119474537	119491294	0.967836
spleen_male_adult_54_years	chr4	152412528	152412529	152412528	-	High_confidence	8	9	10	0.673179	2.503258	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.900000
spleen_male_adult_54_years	chr7	128622497	128622518	128622497	+	RAMPAGE_only	10	11	24	1.615630	4.022055	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128577754	128652334	STRG.68158.2	+	128577754,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294,128629393,128631679,128638773,128642216,128648791,128651037,128651188	128578033,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626530,128629458,128631869,128641379,128642281,128648982,128651095,128652334	0.708333
spleen_male_adult_54_years	chr5	151669678	151669697	151669678	-	RAMPAGE_only	8	8	18	1.211722	3.616875	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.944444
spleen_male_adult_54_years	chr2	64932413	64932456	64932438	-	High_confidence	16	17	61	4.106393	5.635655	chr2	64932285	64932499	LTR|ERVL-MaLR|MLT1K	-	chr2	64931038	64932259	STRG.16630.1	-	64931038	64932259	0.508197
spleen_male_adult_54_years	chr12	66193966	66193967	66193966	+	RAMPAGE_only	8	8	9	0.605861	2.750000	chr12	66193918	66194204	SINE|Alu|AluJb	-	chr12	66189256	66254622	STRG.100600.2	+	66189256,66203710,66209455,66210146,66211445,66217170,66226722,66228251,66244485,66244947,66245097,66247694	66194204,66203893,66209520,66210201,66211597,66217235,66226837,66228370,66244684,66245010,66245262,66254622	0.555556
spleen_male_adult_54_years	chr11	126440880	126440884	126440880	-	High_confidence	10	11	16	1.077087	3.875000	chr11	126440637	126440955	LINE|L2|L2c	-	chr11	126429178	126440882	KIRREL3|ENST00000532647.1	-	126429178,126431418,126436810,126440448,126440850	126429288,126431526,126437009,126440549,126440882	0.562500
spleen_male_adult_54_years	chr1	17005393	17005394	17005393	-	High_confidence	5	5	8	0.538543	2.750000	chr1	17005163	17005347	SINE|MIR|MIR3	-	chr1	17000282	17005395	ATP13A2|ENST00000508222.5	-	17000282,17000399,17002033,17002295,17004331,17004706,17005013,17005373	17000312,17000507,17002103,17002373,17004411,17004821,17005072,17005395	0.625000
spleen_male_adult_54_years	chr4	185620092	185620126	185620125	-	RAMPAGE_only	4	4	10	0.673179	2.921928	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.900000
spleen_male_adult_54_years	chr1	53368122	53368160	53368142	-	High_confidence	4	6	15	1.009769	3.182006	chr1	53367866	53368194	LINE|L2|L2b	+	chr1	53366667	53368245	AC119428.2|ENST00000449958.1	-	53366667,53368005	53367277,53368245	0.800000
spleen_male_adult_54_years	chr16	65053820	65053840	65053820	-	RAMPAGE_only	15	15	25	1.682948	3.588354	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.720000
spleen_male_adult_54_years	chr4	86453324	86453342	86453341	-	High_confidence	3	3	10	0.673179	2.947703	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453325	MAPK10|ENST00000641313.1	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86354644,86453325	0.900000
spleen_male_adult_54_years	chr12	69353390	69353618	69353531	+	RAMPAGE_only	27	30	225	15.146531	5.094379	chr12	69353494	69353787	SINE|Alu|AluY	-	chr12	69348353	69354233	LYZ|NM_000239.2	+	69348353,69350107,69352219,69353152	69348544,69350272,69352298,69354233	0.991111
spleen_male_adult_54_years	chr2	70019163	70019243	70019163	-	High_confidence	8	8	49	3.298578	4.645460	chr2	70018191	70020062	LINE|L1|L1MA8	+	chr2	70018203	70019248	STRG.17108.1	-	70018203	70019248	0.591837
spleen_male_adult_54_years	chr1	14946139	14946150	14946139	+	High_confidence	6	6	13	0.875133	3.026987	chr1	14945935	14946157	SINE|MIR|MIR	-	chr1	14945918	15068155	KAZN|NM_001017999.2	+	14945918,14960683,15034748,15043988,15056090,15060171,15063571,15065629	14946173,14960875,15034885,15044159,15056280,15060302,15063622,15068155	0.923077
spleen_male_adult_54_years	chr18	9185110	9185144	9185110	+	RAMPAGE_only	6	6	11	0.740497	3.027169	chr18	9184924	9185907	LINE|L2|L2c	-	chr18	9136804	9235820	ANKRD12|ENST00000540578.6	+	9136804,9182381,9195550,9204475,9208656,9211583,9216757,9221851,9235637	9136965,9182519,9195698,9204544,9208803,9211784,9216900,9221999,9235820	0.545455
spleen_male_adult_54_years	chr22	21940680	21940701	21940680	-	High_confidence	16	16	26	1.750266	4.161978	chr22	21940485	21940733	LTR|ERVL-MaLR|MLT1C	+	chr22	21931265	21940657	PPM1F|ENST00000445205.1	-	21931265,21933390,21934023,21939531,21940574	21931291,21933579,21934226,21939680,21940657	1.000000
spleen_male_adult_54_years	chr4	128428005	128428006	128428005	+	High_confidence	5	5	8	0.538543	3.000000	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.875000
spleen_male_adult_54_years	chr8	57746128	57746129	57746128	+	High_confidence	60	61	66	4.442982	3.811752	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.954545
spleen_male_adult_54_years	chr3	130548657	130548663	130548660	+	RAMPAGE_only	13	13	38	2.558081	3.870733	chr3	130548092	130549017	LINE|L1|L1MC4	-	chr3	130560325	130567206	STRG.32085.1	+	130560325,130563067,130564993,130566701	130560428,130563664,130565614,130567206	0.894737
spleen_male_adult_54_years	chr2	159428345	159428375	159428356	-	RAMPAGE_only	11	12	25	1.682948	4.243856	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.880000
spleen_male_adult_54_years	chr10	95791799	95791840	95791839	+	RAMPAGE_only	3	4	13	0.875133	3.085055	chr10	95791823	95791874	LINE|CR1|L3	+	chr10	95789433	95797808	STRG.88120.1	+	95789433	95797808	1.000000
spleen_male_adult_54_years	chr19	54277071	54277072	54277071	-	RAMPAGE_only	5	5	7	0.471225	2.584963	chr19	54276972	54277190	SINE|MIR|MIRb	-	chr19	54274465	54278544	LILRB2|ENST00000455108.5	-	54274465,54275950,54276246,54276380,54276806,54277549,54277888,54278259	54274829,54276003,54276301,54276456,54276929,54277600,54277939,54278544	0.714286
spleen_male_adult_54_years	chr20	18794063	18794086	18794085	+	High_confidence	28	28	77	5.183479	4.474549	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.987013
spleen_male_adult_54_years	chr15	89133380	89133389	89133388	+	RAMPAGE_only	6	11	19	1.279040	3.681881	chr15	89133190	89133834	LINE|L1|L1MC5	-	chr15	89116503	89183373	ABHD2|ENST00000562073.1	+	89116503,89151676,89155366,89175811,89183331	89116521,89151852,89155534,89175995,89183373	1.000000
spleen_male_adult_54_years	chr8	141143813	141143832	141143831	+	High_confidence	5	5	13	0.875133	3.026987	chr8	141143796	141144020	LINE|L1|L1ME3A	-	chr8	141143913	141150889	DENND3|ENST00000523015.1	+	141143913,141150833	141144259,141150889	0.846154
spleen_male_adult_54_years	chr3	129230542	129230578	129230542	+	High_confidence	18	18	49	3.298578	4.971653	chr3	129230456	129231665	DNA|TcMar-Tigger|Tigger3b	-	chr3	129230561	129231115	STRG.32199.1	+	129230561	129231115	0.632653
spleen_male_adult_54_years	chr2	232816731	232816732	232816731	+	RAMPAGE_only	9	9	11	0.740497	3.277613	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	1.000000
spleen_male_adult_54_years	chr19	40580225	40580227	40580226	+	High_confidence	33	40	58	3.904439	4.760620	chr19	40580061	40580239	DNA|hAT-Charlie|MER113	-	chr19	40580166	40591395	SHKBP1|ENST00000598201.5	+	40580166,40580565,40580745,40582350,40583397,40583600,40586773,40588623,40589081,40590243,40590729,40590975	40580485,40580656,40580936,40582466,40583485,40583717,40586944,40588779,40589178,40590422,40590853,40591395	0.965517
spleen_male_adult_54_years	chrX	35890888	35890902	35890901	+	RAMPAGE_only	5	5	9	0.605861	3.000000	chrX	35890725	35891088	LTR|ERVL|LTR41	+	chrX	35919733	35990147	CFAP47|ENST00000297866.9	+	35919733,35926016,35941282,35948313,35951130,35951802,35953591,35955960,35966564,35967618,35970767,35971585,35971868,35975146,35975671,35989318	35920048,35926168,35941398,35948452,35951359,35951963,35953719,35956196,35966754,35967832,35970923,35971772,35971965,35975363,35975913,35990147	0.888889
spleen_male_adult_54_years	chr11	90251204	90251205	90251204	+	High_confidence	28	35	35	2.356127	4.843569	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.685714
spleen_male_adult_54_years	chr17	80289590	80289594	80289590	+	RAMPAGE_only	17	21	51	3.433214	4.704449	chr17	80289307	80289613	SINE|Alu|AluSq	+	chr17	80287958	80336900	RNF213|ENST00000559070.5	+	80287958,80288632,80289658,80290569,80291627,80294719,80295556,80298320,80306251,80307127,80309017,80313011,80317187,80319189,80325029,80327815,80328327,80332005,80334104,80336160	80288363,80288755,80289837,80290728,80291827,80295003,80295813,80298518,80306468,80307201,80309171,80313167,80317277,80319312,80325198,80327989,80328477,80332631,80334270,80336900	0.941176
spleen_male_adult_54_years	chr3	11225885	11225906	11225885	-	High_confidence	3	3	10	0.673179	2.947703	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.600000
spleen_male_adult_54_years	chr10	61466025	61466030	61466025	+	RAMPAGE_only	4	4	10	0.673179	3.121928	chr10	61465834	61466229	LTR|ERVL-MaLR|MLT1B	+	chr10	61480040	61483191	TMEM26-AS1|NR_120644.1	+	61480040,61481839,61482789,61482921	61480204,61481950,61482825,61483191	0.500000
spleen_male_adult_54_years	chr11	277517	277524	277523	-	RAMPAGE_only	9	9	15	1.009769	2.606239	chr11	277457	277952	LTR|ERV1|MER41B	-	chr11	275919	281564	STRG.89694.2	-	275919,279816	277423,281564	0.933333
spleen_male_adult_54_years	chr16	75248150	75248151	75248150	-	High_confidence	30	30	41	2.760034	4.918528	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.975610
spleen_male_adult_54_years	chrX	131818405	131818406	131818405	-	High_confidence	5	8	8	0.538543	2.750000	chrX	131818226	131818582	LTR|ERVL-MaLR|MLT1A	-	chrX	131691557	131818406	FIRRE|ENST00000647966.1	-	131691557,131711650,131749305,131755597,131756610,131768548,131777622,131783886,131794296,131804971,131818294	131692636,131711744,131749458,131755746,131756709,131768696,131777744,131784039,131794466,131805037,131818406	0.625000
spleen_male_adult_54_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	67	67	74	4.981526	5.008627	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.635135
spleen_male_adult_54_years	chr20	15923313	15923314	15923313	-	High_confidence	20	20	22	1.480994	4.121928	chr20	15923155	15923507	LTR|ERVL-MaLR|THE1A	-	chr20	15892332	15923314	LOC613266|NR_130925.1	-	15892332,15923231	15894277,15923314	0.500000
spleen_male_adult_54_years	chr8	118282301	118282302	118282301	+	High_confidence	7	7	9	0.605861	2.500000	chr8	118282102	118282313	SINE|MIR|MIRc	-	chr8	118282260	118288356	AC023590.1|ENST00000449065.5	+	118282260,118284271,118284513,118288238	118282330,118284421,118284586,118288356	0.666667
spleen_male_adult_54_years	chr12	127060455	127060505	127060504	+	High_confidence	16	17	60	4.039075	5.083823	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060469	127060867	STRG.103712.1	+	127060469	127060867	0.516667
spleen_male_adult_54_years	chr14	64025418	64025419	64025418	+	RAMPAGE_only	9	9	9	0.605861	2.947703	chr14	64025468	64025746	LINE|CR1|L3b	+	chr14	64003023	64049279	SYNE2|ENST00000557005.1	+	64003023,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024911,64025129,64026578,64027483,64029894,64031015,64047999	64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64049279	1.000000
spleen_male_adult_54_years	chr14	35294421	35294446	35294442	+	RAMPAGE_only	19	21	69	4.644936	5.403208	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	0.797101
spleen_male_adult_54_years	chr14	102370760	102370793	102370760	+	RAMPAGE_only	65	74	185	12.453814	6.310867	chr14	102370462	102370850	LINE|L2|L2b	-	chr14	102369515	102471500	STRG.113213.3	+	102369515,102370185,102376649,102407337,102408487,102414635,102425010,102428249,102431795,102434234,102438021,102440435,102443646,102445805,102449628,102450559,102452393,102465140,102471466	102369538,102370962,102376940,102407466,102408619,102414793,102425291,102428382,102432128,102435211,102438205,102440609,102443827,102445947,102449869,102450649,102452627,102465289,102471500	0.805405
spleen_male_adult_54_years	chr15	57300338	57300344	57300343	+	High_confidence	53	53	119	8.010832	5.382890	chr15	57300291	57300572	SINE|Alu|AluSg	-	chr15	57300364	57307769	STRG.115776.2	+	57300364,57307541	57307068,57307769	0.991597
spleen_male_adult_54_years	chr4	88456743	88456797	88456779	-	High_confidence	4	4	18	1.211722	3.175123	chr4	88456468	88456764	SINE|Alu|AluY	-	chr4	88419246	88455842	STRG.38843.1	-	88419246,88419573,88420355,88455217	88419408,88419699,88420428,88455842	0.611111
spleen_male_adult_54_years	chr15	89312965	89312966	89312965	+	RAMPAGE_only	13	13	13	0.875133	3.180833	chr15	89313009	89313328	LINE|L1|L1MB8	+	chr15	89307858	89316426	FANCI|ENST00000566615.1	+	89307858,89312903,89314611,89315281,89316396	89308092,89312972,89314707,89315389,89316426	0.692308
spleen_male_adult_54_years	chr7	154928474	154928504	154928503	+	High_confidence	31	32	48	3.231260	4.970176	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.937500
spleen_male_adult_54_years	chr5	138369928	138369978	138369977	+	High_confidence	6	6	25	1.682948	4.175736	chr5	138369795	138370010	SINE|MIR|MIRc	-	chr5	138369125	138384050	STRG.49836.3	+	138369125,138372673,138375092,138377719,138379583,138381515	138370042,138372841,138375206,138377825,138379708,138384050	0.560000
spleen_male_adult_54_years	chr6	33301449	33301528	33301473	-	RAMPAGE_only	30	30	118	7.943514	4.892102	chr6	33301291	33301595	SINE|Alu|AluSx	+	chr6	33299693	33314387	TAPBP|ENST00000434618.6	-	33299693,33303954,33304127,33304296,33304988,33313216,33313693,33314004	33301771,33303989,33304217,33304638,33305387,33313477,33313864,33314387	0.991525
spleen_male_adult_54_years	chr17	628448	628476	628475	-	High_confidence	3	3	8	0.538543	2.750000	chr17	628397	628455	DNA|hAT-Ac|OldhAT1	-	chr17	600879	628231	VPS53|ENST00000570650.1	-	600879,601794,623532,627173,628087	601077,601896,623674,627316,628231	0.750000
spleen_male_adult_54_years	chr2	143247289	143247353	143247289	+	RAMPAGE_only	32	32	77	5.183479	5.485110	chr2	143246994	143247508	LTR|ERVL|LTR32	+	chr2	143129329	143768352	ARHGAP15|NM_018460.3	+	143129329,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.649351
spleen_male_adult_54_years	chr5	147382883	147382895	147382883	+	High_confidence	3	3	9	0.605861	2.750000	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.777778
spleen_male_adult_54_years	chr2	85319378	85319379	85319378	-	RAMPAGE_only	8	10	10	0.673179	2.646439	chr2	85319170	85319474	SINE|Alu|AluSc	-	chr2	85318026	85328251	TGOLN2|ENST00000398263.6	-	85318026,85324914,85326507,85326978,85327916	85322741,85324998,85326804,85327685,85328251	1.000000
spleen_male_adult_54_years	chr9	123758085	123758099	123758098	-	High_confidence	4	4	10	0.673179	2.725481	chr9	123758093	123758254	SINE|MIR|MIRb	-	chr9	123569544	123757759	DENND1A|ENST00000474676.1	-	123569544,123583168,123609435,123630375,123652012,123667025,123671290,123757702	123569595,123583270,123609481,123630476,123652123,123667079,123671371,123757759	0.800000
spleen_male_adult_54_years	chr15	100596921	100596937	100596932	-	High_confidence	9	9	21	1.413676	3.932138	chr15	100596785	100597218	LTR|ERV1|LTR43B	+	chr15	100580319	100596936	LINS1|ENST00000560934.1	-	100580319,100580443,100596909	100580352,100580945,100596936	0.619048
spleen_male_adult_54_years	chr10	96737484	96737499	96737498	+	High_confidence	5	6	10	0.673179	2.721928	chr10	96737353	96737687	LTR|ERVL-MaLR|THE1D	+	chr10	96737536	96737946	STRG.88269.1	+	96737536	96737946	0.700000
spleen_male_adult_54_years	chr8	32927967	32927984	32927967	+	RAMPAGE_only	47	47	139	9.357190	5.898884	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.640288
spleen_male_adult_54_years	chr1	212688413	212688487	212688413	-	High_confidence	7	7	39	2.625399	4.426177	chr1	212688077	212688769	LINE|CR1|L3	-	chr1	212686417	212687509	BATF3|ENST00000471382.5	-	212686417,212687466	212686979,212687509	0.512821
spleen_male_adult_54_years	chr20	48684689	48684733	48684719	-	RAMPAGE_only	18	18	55	3.702485	4.844494	chr20	48684672	48685218	LINE|L2|L2a	+	chr20	48624251	48827883	PREX1|ENST00000371941.3	-	48624251,48627547,48627860,48629448,48630727,48632276,48632495,48634675,48636462,48637710,48639765,48642167,48642406,48644408,48645850,48649299,48649995,48650893,48651395,48652585,48653360,48655289,48657039,48658135,48659918,48666282,48676192,48679359,48679650,48681234,48688656,48690946,48692671,48700752,48708259,48726289,48734545,48745024,48747808,48827641	48625927,48627615,48627963,48629621,48630794,48632391,48632639,48634775,48636683,48637752,48639894,48642258,48642489,48644497,48646057,48649576,48650206,48651055,48651583,48652706,48653497,48655375,48657188,48658228,48660061,48666355,48676268,48679409,48679754,48681335,48688804,48691096,48692790,48700886,48708421,48726391,48734650,48745147,48747880,48827883	0.927273
spleen_male_adult_54_years	chr21	38809137	38809168	38809167	+	RAMPAGE_only	4	6	13	0.875133	3.418296	chr21	38809076	38809317	DNA|hAT-Charlie|MER33	-	chr21	38805950	38824955	STRG.139214.3	+	38805950,38814272,38814780,38817007,38818424,38819502,38821585,38822673	38813114,38814392,38814981,38817091,38818646,38819766,38821704,38824955	0.923077
spleen_male_adult_54_years	chr3	134595320	134595321	134595320	+	RAMPAGE_only	9	9	11	0.740497	2.845351	chr3	134595069	134595442	LTR|ERVL-MaLR|THE1C	+	chr3	134597823	134628104	EPHB1|ENST00000472904.5	+	134597823,134615183,134627939	134597984,134615438,134628104	0.818182
spleen_male_adult_54_years	chr15	75347042	75347073	75347042	+	High_confidence	7	7	25	1.682948	4.243856	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.560000
spleen_male_adult_54_years	chr17	77127872	77127873	77127872	+	High_confidence	48	49	69	4.644936	5.584527	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.710145
spleen_male_adult_54_years	chr22	42932235	42932284	42932283	-	RAMPAGE_only	4	4	17	1.144405	3.125000	chr22	42931987	42932447	LINE|L2|L2a	+	chr22	42890943	42945873	PACSIN2|ENST00000418133.5	-	42890943,42893456,42912020,42945784	42891182,42893613,42912157,42945873	0.647059
spleen_male_adult_54_years	chr16	19487898	19487901	19487900	-	High_confidence	11	19	24	1.615630	4.168296	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.583333
spleen_male_adult_54_years	chr14	50756600	50756601	50756600	-	RAMPAGE_only	9	9	11	0.740497	3.027169	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.909091
spleen_male_adult_54_years	chr8	116652016	116652035	116652016	+	High_confidence	78	84	151	10.165005	5.495443	chr8	116651777	116652029	LINE|L2|L2	-	chr8	116652099	116654625	LOC105375713|NR_136278.1	+	116652099,116654158	116652456,116654625	0.781457
spleen_male_adult_54_years	chr5	14572964	14572972	14572964	-	High_confidence	128	134	197	13.261629	6.044319	chr5	14572729	14573102	LTR|ERVL-MaLR|MLT1A0	-	chr5	14572730	14572953	STRG.43564.1	-	14572730	14572953	0.573604
spleen_male_adult_54_years	chr2	48362679	48362680	48362679	+	RAMPAGE_only	5	5	7	0.471225	2.521641	chr2	48362726	48363918	DNA|TcMar-Tigger|Tigger3b	+	chr2	48346216	48375565	FOXN2|ENST00000616844.1	+	48346216,48346532,48359046,48362642,48373291,48374919	48346530,48346751,48359147,48362707,48373360,48375565	0.714286
spleen_male_adult_54_years	chr1	171251849	171251857	171251849	-	High_confidence	2	2	7	0.471225	2.584963	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171247579	171251794	AL445673.1|ENST00000455124.2	-	171247579,171251522	171247723,171251794	0.857143
spleen_male_adult_54_years	chr2	47369479	47369492	47369479	+	High_confidence	5	5	15	1.009769	3.521641	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369474	47375254	EPCAM|ENST00000474691.1	+	47369474,47373462,47375233	47369581,47374048,47375254	0.733333
spleen_male_adult_54_years	chr5	177431710	177431721	177431710	+	High_confidence	33	34	78	5.250797	4.967872	chr5	177431745	177431876	SINE|MIR|MIRb	+	chr5	177431710	177442064	GRK6|ENST00000515666.5	+	177431710,177432232,177432705,177433146,177433346,177433535,177433913,177434901,177435031,177436072,177436392,177440699,177440918,177441736	177432107,177432310,177432806,177433239,177433410,177433676,177434104,177434939,177435121,177436281,177436530,177440837,177441053,177442064	0.871795
spleen_male_adult_54_years	chr1	60825662	60825686	60825662	-	High_confidence	25	26	76	5.116161	5.401631	chr1	60825624	60825834	SINE|MIR|MIRb	-	chr1	60659630	60825584	AC099792.1|ENST00000423403.1	-	60659630,60662984,60729574,60732446,60733463,60825335	60661470,60663025,60729667,60732508,60733522,60825584	0.671053
spleen_male_adult_54_years	chr6	143707921	143707973	143707968	+	RAMPAGE_only	23	23	68	4.577618	4.912136	chr6	143707720	143708120	LTR|ERVL-MaLR|MSTA	-	chr6	143678172	143712336	PHACTR2|ENST00000545919.1	+	143678172,143712015	143678209,143712336	0.588235
spleen_male_adult_54_years	chr14	81427145	81427179	81427145	-	High_confidence	12	12	24	1.615630	3.720176	chr14	81426946	81427161	SINE|MIR|MIR	-	chr14	81260649	81427212	STON2|NM_033104.3	-	81260649,81276900,81370987,81395893,81398294,81427101	81270872,81278739,81371185,81396178,81398580,81427212	0.958333
spleen_male_adult_54_years	chr12	123390760	123390774	123390773	+	High_confidence	6	6	11	0.740497	2.721928	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.909091
spleen_male_adult_54_years	chr17	30958757	30958758	30958757	+	RAMPAGE_only	7	7	9	0.605861	2.500000	chr17	30958611	30958901	SINE|Alu|AluJb	+	chr17	30921735	30959193	ADAP2|NM_018404.2	+	30921735,30922939,30926826,30931888,30934184,30944906,30949286,30953287,30954477,30956240,30957834	30922108,30923070,30926918,30931968,30934297,30945053,30949370,30953350,30954555,30956469,30959193	0.666667
spleen_male_adult_54_years	chr16	69838727	69838808	69838807	+	High_confidence	6	6	32	2.154173	4.304229	chr16	69838688	69838832	LINE|CR1|X7A_LINE	+	chr16	69838736	69941741	WWP2|NM_001270453.1	+	69838736,69840125,69842023,69871803,69888038,69908760,69917708,69925429,69929447,69930129,69931151,69931508,69931801,69933969,69935852,69936311,69937117,69937547,69939026,69939340,69939840	69838889,69840263,69842120,69871931,69888249,69908850,69917883,69925484,69929529,69930258,69931227,69931580,69931890,69934129,69935986,69936452,69937238,69937652,69939123,69939413,69941741	1.000000
spleen_male_adult_54_years	chr2	130428519	130428553	130428552	-	High_confidence	4	4	16	1.077087	3.750000	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046259.1	-	130416749,130419070,130425090,130425913,130427703	130418298,130419245,130425158,130426038,130428546	0.937500
spleen_male_adult_54_years	chr12	109053951	109053972	109053956	-	High_confidence	52	64	132	8.885965	5.912736	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.704545
spleen_male_adult_54_years	chr2	196176330	196176332	196176331	-	High_confidence	65	101	133	8.953283	5.708794	chr2	196176299	196176378	LINE|RTE-BovB|MamRTE1	-	chr2	196156571	196176327	STK17B|ENST00000420683.1	-	196156571,196163261,196174248,196176225	196156651,196163427,196174407,196176327	0.766917
spleen_male_adult_54_years	chr10	71762103	71762165	71762126	-	High_confidence	7	7	25	1.682948	4.584963	chr10	71762097	71762177	SINE|MIR|MIRb	+	chr10	71760481	71761944	VSIR|ENST00000481568.2	-	71760481,71761597	71760924,71761944	0.880000
spleen_male_adult_54_years	chr1	113759894	113759899	113759898	-	High_confidence	7	7	14	0.942451	3.324863	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759540	PHTF1|NR_136565.1	-	113697204,113698261,113699703,113700192,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113724758,113726417,113738109,113738729,113757698,113758658,113759022	113697725,113698387,113699799,113700243,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113724893,113726574,113738268,113738799,113757755,113758733,113759540	0.642857
spleen_male_adult_54_years	chr12	636781	636797	636796	-	RAMPAGE_only	4	7	11	0.740497	2.663533	chr12	636425	637068	LINE|L1|L1MB4	+	chr12	565359	643636	NINJ2|ENST00000433832.2	-	565359,643510	566178,643636	0.545455
spleen_male_adult_54_years	chr1	161043269	161043281	161043269	-	High_confidence	4	5	10	0.673179	2.921928	chr1	161043002	161043224	SINE|MIR|MIRb	-	chr1	161040208	161043342	USF1|ENST00000531842.1	-	161040208,161040575,161040813,161041323,161041833,161042115,161042554,161042832,161043267	161040330,161040670,161040872,161041411,161041846,161042217,161042670,161042882,161043342	0.600000
spleen_male_adult_54_years	chr11	64242546	64242547	64242546	+	High_confidence	10	10	14	0.942451	3.664498	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
spleen_male_adult_54_years	chr8	47360804	47360819	47360804	+	High_confidence	58	58	113	7.606924	5.409423	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47440397	SPIDR|ENST00000521918.6	+	47360818,47396375,47407860,47440322	47360949,47396626,47407961,47440397	0.849558
spleen_male_adult_54_years	chr3	50093542	50093555	50093542	+	High_confidence	5	5	17	1.144405	3.219528	chr3	50093477	50093585	SINE|Alu|FLAM_C	+	chr3	50093717	50108305	RBM5|ENST00000395174.6	+	50093717,50099981,50103082,50104247,50105076,50105548,50106766,50107481,50108069,50108231	50093875,50100051,50103166,50104308,50105142,50105709,50106864,50107569,50108147,50108305	0.823529
spleen_male_adult_54_years	chr9	39810023	39810064	39810033	-	High_confidence	30	30	74	4.981526	5.098279	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.675676
spleen_male_adult_54_years	chr11	78532950	78532951	78532950	+	High_confidence	23	24	34	2.288809	4.712319	chr11	78532498	78533068	LTR|ERV1|LTR24C	+	chr11	78532958	78546577	STRG.93775.1	+	78532958,78546508	78533303,78546577	0.500000
spleen_male_adult_54_years	chr9	84368670	84368711	84368670	-	High_confidence	9	9	29	1.952219	4.017825	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.689655
spleen_male_adult_54_years	chr21	33931219	33931235	33931224	+	High_confidence	11	13	30	2.019537	3.736243	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.766667
spleen_male_adult_54_years	chr15	44662617	44662618	44662617	-	RAMPAGE_only	12	12	17	1.144405	3.454822	chr15	44662388	44662674	SINE|Alu|AluJb	+	chr15	44563120	44663647	SPG11|ENST00000427534.6	-	44563120,44567423,44569397,44570524,44572682,44573546,44574901,44583813,44585635,44589251,44592330,44595258,44596082,44596783,44598264,44598630,44600466,44606024,44608443,44610839,44613429,44615362,44620189,44621758,44622219,44622727,44626330,44628668,44629232,44633504,44648865,44651490,44652128,44657094,44659078,44660431,44663390	44563301,44567592,44569505,44570658,44572820,44573745,44575041,44584558,44585850,44589414,44592438,44595459,44596355,44596943,44598373,44598836,44600632,44606091,44608605,44610985,44613536,44615566,44620403,44621934,44622347,44622799,44626507,44628844,44629388,44633637,44649011,44651939,44652266,44657296,44659303,44660616,44663647	0.764706
spleen_male_adult_54_years	chr11	57005830	57005878	57005864	-	RAMPAGE_only	3	3	13	0.875133	3.418296	chr11	57005052	57006593	LTR|ERV1|MER52A	-	chr11	56970101	57092410	STRG.92231.6	-	56970101,57005728,57091973	57002507,57005899,57092410	0.538462
spleen_male_adult_54_years	chr10	65570512	65570522	65570519	+	High_confidence	18	28	71	4.779572	5.475461	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570522	65585801	STRG.85741.2	+	65570522,65571424,65572934,65585484	65570759,65571579,65573056,65585801	0.816901
spleen_male_adult_54_years	chr2	218125289	218125315	218125314	+	High_confidence	5	7	24	1.615630	3.803509	chr2	218123953	218125352	LINE|L1|L1PBb	-	chr2	218125289	218137253	CXCR2|NM_001168298.1	+	218125289,218126290,218129313,218134776	218125359,218126353,218129365,218137253	0.833333
spleen_male_adult_54_years	chr3	129586596	129586624	129586596	-	High_confidence	2	2	7	0.471225	2.807355	chr3	129586391	129586559	LINE|L2|L2c	-	chr3	129583630	129586685	PLXND1|ENST00000505665.5	-	129583630,129584124,129585951,129586171,129586587	129583669,129584233,129586081,129586272,129586685	0.714286
spleen_male_adult_54_years	chr10	100291407	100291429	100291418	-	RAMPAGE_only	5	6	23	1.548312	3.653757	chr10	100291357	100291454	SINE|MIR|MIR1_Amn	+	chr10	100288395	100329940	PKD2L1|ENST00000528248.1	-	100288395,100288971,100290014,100290400,100291300,100292947,100293280,100294534,100294941,100296121,100296979,100297381,100298561,100299590,100329210,100329868	100288478,100289056,100290138,100290519,100291427,100293069,100293379,100294655,100295123,100296292,100297208,100297606,100298815,100299718,100329346,100329940	0.652174
spleen_male_adult_54_years	chr19	39335707	39335718	39335707	-	High_confidence	2	2	6	0.403907	2.584963	chr19	39335628	39335746	DNA|hAT-Tip100|MER91A	-	chr19	39328358	39335531	GMFG|ENST00000596583.5	-	39328358,39328999,39329547,39333076,39335434	39328548,39329073,39329626,39333126,39335531	0.833333
spleen_male_adult_54_years	chr17	30968780	30968792	30968780	+	High_confidence	3	4	9	0.605861	3.169925	chr17	30968749	30968853	LINE|L2|L2	-	chr17	30968784	30970307	RNF135|ENST00000582674.1	+	30968784,30970277	30969335,30970307	0.555556
spleen_male_adult_54_years	chr21	41430585	41430586	41430585	+	RAMPAGE_only	15	15	19	1.279040	3.947703	chr21	41429929	41430715	DNA|hAT-Charlie|Charlie2b	+	chr21	41431713	41459214	MX1|ENST00000288383.10	+	41431713,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41432175,41435960,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	0.947368
spleen_male_adult_54_years	chr8	141175453	141175474	141175455	+	RAMPAGE_only	3	5	10	0.673179	2.921928	chr8	141175497	141175698	SINE|MIR|MIR	+	chr8	141155893	141185223	STRG.76680.5	+	141155893,141160631,141163332,141165185,141166189,141168003,141173326,141175199,141176590,141180746,141185138	141155970,141160787,141163429,141165289,141166389,141168525,141173741,141175459,141178196,141180854,141185223	0.600000
spleen_male_adult_54_years	chr5	126814074	126814163	126814074	+	RAMPAGE_only	25	26	133	8.953283	5.799108	chr5	126813882	126814194	SINE|Alu|AluSp	-	chr5	126811712	126821081	LMNB1|ENST00000494185.1	+	126811712,126818921,126820909	126811898,126819142,126821081	0.759398
spleen_male_adult_54_years	chr3	50312381	50312405	50312396	-	High_confidence	4	5	22	1.480994	3.884184	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50299888	50312381	HYAL1|NM_153281.1	-	50299888,50300987,50302056,50303787,50309658,50312263	50300800,50301077,50302980,50303953,50309777,50312381	0.681818
spleen_male_adult_54_years	chr5	150640005	150640051	150640050	+	High_confidence	19	22	84	5.654705	5.517010	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150640310	150659211	STRG.50492.4	+	150640310,150647943,150656403	150640425,150650303,150659211	0.952381
spleen_male_adult_54_years	chr1	157275094	157275095	157275094	+	RAMPAGE_only	12	13	14	0.942451	3.521641	chr1	157274375	157275504	LTR|ERV1|HERVFH21-int	-	chr1	157280715	157283068	AL138900.3|ENST00000607010.1	+	157280715,157282577	157280853,157283068	0.571429
spleen_male_adult_54_years	chr14	22086365	22086396	22086365	+	High_confidence	5	5	13	0.875133	3.584963	chr14	22086381	22086487	LINE|CR1|L3b	+	chr14	22086406	22086961	TRAV23DV6|ENST00000390451.2	+	22086406,22086649	22086503,22086961	0.538462
spleen_male_adult_54_years	chr14	81192669	81192682	81192669	-	RAMPAGE_only	15	15	44	2.961988	4.850534	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.931818
spleen_male_adult_54_years	chr4	152850652	152850668	152850667	+	High_confidence	3	3	8	0.538543	2.521641	chr4	152850580	152850736	DNA|hAT-Charlie|MER5A1	+	chr4	152850647	152881111	ARFIP1|ENST00000513361.1	+	152850647,152863605,152870752,152872451,152880962	152850727,152863714,152870848,152872564,152881111	0.750000
spleen_male_adult_54_years	chr10	71764142	71764270	71764220	-	RAMPAGE_only	34	35	112	7.539606	4.374314	chr10	71764219	71764386	SINE|MIR|MIR	-	chr10	71747558	71773498	STRG.86241.6	-	71747558,71751667,71752974,71755358,71760867,71761597,71772655	71751290,71751861,71753002,71755466,71760924,71772260,71773498	1.000000
spleen_male_adult_54_years	chr22	50541367	50541389	50541388	+	RAMPAGE_only	8	9	19	1.279040	3.350209	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	0.789474
spleen_male_adult_54_years	chr5	997289	997314	997313	-	High_confidence	10	10	27	1.817584	4.323856	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.925926
spleen_male_adult_54_years	chr3	152243808	152243816	152243808	+	High_confidence	4	4	9	0.605861	2.947703	chr3	152243797	152244104	SINE|Alu|AluSx1	-	chr3	152243827	152300110	MBNL1|ENST00000477171.1	+	152243827,152244320,152299404	152244040,152244440,152300110	0.555556
spleen_male_adult_54_years	chr3	134485443	134485509	134485443	-	High_confidence	8	8	25	1.682948	4.563856	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.760000
spleen_male_adult_54_years	chr1	206052882	206052893	206052890	+	RAMPAGE_only	8	8	15	1.009769	3.521641	chr1	206052518	206053000	LTR|ERV1|LTR2B	+	chr1	206035211	206058870	STRG.10469.1	+	206035211,206051741,206053020	206035299,206052001,206058870	0.666667
spleen_male_adult_54_years	chr5	94032902	94032922	94032921	-	RAMPAGE_only	8	8	20	1.346358	3.721612	chr5	94032873	94033236	LTR|ERVL-MaLR|THE1C	+	chr5	93881310	94074771	FAM172A|ENST00000506398.6	-	93881310,93958776,93964457,94050730,94053125,94074645	93881688,93958968,93964523,94050831,94053227,94074771	0.700000
spleen_male_adult_54_years	chr2	71070341	71070346	71070345	+	High_confidence	3	3	8	0.538543	2.750000	chr2	71070022	71070368	LINE|L2|L2b	-	chr2	71070299	71075630	NAGK|ENST00000464638.5	+	71070299,71073481,71075554	71070839,71073594,71075630	0.750000
spleen_male_adult_54_years	chr12	51284935	51284936	51284935	-	RAMPAGE_only	10	10	10	0.673179	3.121928	chr12	51284928	51285013	SINE|MIR|MIR3	-	chr12	51281037	51324115	BIN2|ENST00000604560.5	-	51281037,51284715,51291590,51295795,51297088,51299202,51299606,51302019,51302685,51303086,51324021	51281528,51284780,51292344,51295878,51297164,51299288,51299714,51302115,51302780,51303141,51324115	1.000000
spleen_male_adult_54_years	chr16	31118721	31118790	31118781	+	RAMPAGE_only	11	11	48	3.231260	5.214163	chr16	31118415	31118797	LINE|L2|L2c	+	chr16	31117696	31123061	STRG.120193.9	+	31117696,31120338	31120260,31123061	0.750000
spleen_male_adult_54_years	chr13	24272874	24272875	24272874	+	RAMPAGE_only	9	9	13	0.875133	3.418296	chr13	24272710	24272887	SINE|MIR|MIRb	+	chr13	24270840	24286393	SPATA13|ENST00000454083.1	+	24270840,24278613,24284134,24286213	24270912,24278821,24284271,24286393	0.538462
spleen_male_adult_54_years	chr2	201122589	201122606	201122589	+	RAMPAGE_only	5	5	14	0.942451	3.026987	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201118663	201163973	STRG.23457.5	+	201118663,201119027,201133028,201135971,201140356,201145377,201149002,201149753,201160431,201163834	201118901,201130146,201133134,201136107,201140439,201145432,201149052,201149835,201160942,201163973	0.928571
spleen_male_adult_54_years	chr4	141332616	141332617	141332616	-	High_confidence	822	826	847	57.018273	4.815565	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.957497
spleen_male_adult_54_years	chr19	48868595	48868617	48868613	-	High_confidence	162	195	749	50.421117	7.288620	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.989319
spleen_male_adult_54_years	chr22	31290280	31290308	31290280	-	High_confidence	4	4	12	0.807815	2.792481	chr22	31290108	31290412	SINE|Alu|AluSx	+	chr22	31281678	31290726	PIK3IP1|ENST00000493034.1	-	31281678,31289314,31289498,31289932	31283288,31289393,31289699,31290726	1.000000
spleen_male_adult_54_years	chr1	202471468	202471496	202471495	+	RAMPAGE_only	88	88	247	16.627525	5.926848	chr1	202470938	202471780	LINE|L1|L1ME3Cz	-	chr1	202462742	202581152	PPP1R12B|ENST00000491336.5	+	202462742,202488532,202493113,202495292,202495569,202496780,202558876,202562777,202564442,202567777,202569146,202580473	202463097,202488623,202493317,202495482,202495682,202496822,202558893,202562922,202564547,202567831,202569197,202581152	0.983806
spleen_male_adult_54_years	chr11	123061128	123061257	123061256	-	High_confidence	162	166	353	23.763224	5.565562	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.943343
spleen_male_adult_54_years	chr6	148867648	148867685	148867648	+	RAMPAGE_only	4	4	14	0.942451	3.085055	chr6	148867480	148867818	LTR|ERVL-MaLR|THE1B	+	chr6	148747327	149076990	UST|ENST00000367463.4	+	148747327,148886985,148941278,148953871,148964409,149019138,149021323,149073832	148747677,148887029,148941434,148953951,148964563,149019236,149021481,149076990	0.785714
spleen_male_adult_54_years	chr7	150567272	150567273	150567272	+	High_confidence	6	6	6	0.403907	2.584963	chr7	150567129	150567290	DNA|hAT-Charlie|MER3	-	chr7	150567276	150573955	GIMAP4|ENST00000255945.3	+	150567276,150569887,150572128	150567437,150569959,150573955	1.000000
spleen_male_adult_54_years	chr2	201124467	201124476	201124473	+	RAMPAGE_only	8	8	24	1.615630	4.055958	chr2	201124350	201124634	SINE|Alu|AluSz6	-	chr2	201118663	201163973	STRG.23457.5	+	201118663,201119027,201133028,201135971,201140356,201145377,201149002,201149753,201160431,201163834	201118901,201130146,201133134,201136107,201140439,201145432,201149052,201149835,201160942,201163973	0.958333
spleen_male_adult_54_years	chr9	62840666	62840667	62840666	+	High_confidence	13	15	15	1.009769	3.373557	chr9	62840283	62843326	LINE|L1|L1PBa	-	chr9	62840644	62847206	PTGER4P2-CDK2AP2P2|NR_135010.1	+	62840644,62843804,62844618	62840802,62844182,62847206	0.800000
spleen_male_adult_54_years	chr8	90006123	90006163	90006154	+	RAMPAGE_only	8	8	31	2.086855	3.922829	chr8	90005695	90006172	LTR|ERVL-MaLR|MSTB1	-	chr8	90001475	90051920	STRG.74405.3	+	90001475,90018908,90019085,90020908,90036840,90042727,90044848,90051676,90051837	90017326,90018966,90019172,90021056,90036940,90042800,90044995,90051739,90051920	0.935484
spleen_male_adult_54_years	chr13	24272699	24272700	24272699	+	High_confidence	12	12	12	0.807815	3.084963	chr13	24272710	24272887	SINE|MIR|MIRb	+	chr13	24272688	24278769	SPATA13|ENST00000488060.1	+	24272688,24278613	24273137,24278769	0.916667
spleen_male_adult_54_years	chr22	37284600	37284638	37284600	+	RAMPAGE_only	2	2	11	0.740497	3.027169	chr22	37284608	37284769	SINE|MIR|MIR3	+	chr22	37282530	37302019	CYTH4|ENST00000439667.1	+	37282530,37292620,37294659,37295998,37297563,37299225,37300906,37301880	37282588,37292703,37294724,37296065,37297682,37299306,37301019,37302019	0.818182
spleen_male_adult_54_years	chr6	166969771	166969800	166969771	-	RAMPAGE_only	10	10	27	1.817584	4.293661	chr6	166969729	166969991	LTR|ERV1|LTR10B1	-	chr6	166967903	166973331	STRG.60455.1	-	166967903,166972738	166968187,166973331	0.518519
spleen_male_adult_54_years	chr9	76608877	76608904	76608903	+	High_confidence	166	168	405	27.263755	5.359777	chr9	76608739	76609168	LTR|ERVL-MaLR|MLT1F2	+	chr9	76608868	76645162	STRG.80259.1	+	76608868,76642193,76644717	76609342,76642286,76645162	0.854321
spleen_male_adult_54_years	chr17	64342049	64342060	64342049	-	RAMPAGE_only	19	19	42	2.827352	4.900116	chr17	64341867	64342175	SINE|Alu|AluSz	+	chr17	64319414	64390878	PECAM1|NM_000442.4	-	64319414,64329699,64341633,64348259,64350379,64352389,64353490,64354932,64356110,64360139,64363148,64369749,64375050,64377823,64390488,64390601	64323845,64329722,64341690,64348322,64350433,64352463,64353518,64355040,64356398,64360415,64363397,64370025,64375356,64378117,64390515,64390878	0.833333
spleen_male_adult_54_years	chrX	5726324	5726325	5726324	-	High_confidence	29	30	34	2.288809	4.438334	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.882353
spleen_male_adult_54_years	chr21	36005313	36005320	36005319	+	High_confidence	18	19	38	2.558081	3.980158	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.973684
spleen_male_adult_54_years	chr4	55382649	55382666	55382649	-	High_confidence	16	16	28	1.884902	4.664498	chr4	55381509	55382969	DNA|hAT-Tip100|MER45R	+	chr4	55366953	55381893	SRD5A3-AS1|ENST00000596312.5	-	55366953,55374870,55377606,55380795,55381724	55367163,55375033,55377770,55380879,55381893	0.714286
spleen_male_adult_54_years	chr18	14983305	14983306	14983305	-	High_confidence	7	8	10	0.673179	3.169925	chr18	14981407	14983582	LINE|L1|L1PB	+	chr18	14982331	14983040	STRG.128209.1	-	14982331	14983040	0.600000
spleen_male_adult_54_years	chr2	233195309	233195310	233195309	+	High_confidence	7	7	7	0.471225	2.521641	chr2	233195192	233195341	DNA|hAT-Charlie|MER117	-	chr2	233195436	233206952	INPP5D|ENST00000417661.1	+	233195436,233198094,233206705	233195495,233198376,233206952	0.857143
spleen_male_adult_54_years	chr1	21111368	21111374	21111373	-	High_confidence	4	4	8	0.538543	2.807355	chr1	21111257	21111427	SINE|MIR|MIRb	+	chr1	20806291	21111383	EIF4G3|NM_003760.4	-	20806291,20810737,20813157,20817391,20825099,20827616,20829146,20840855,20849414,20851257,20853559,20854977,20857402,20860384,20862227,20864475,20865115,20879322,20886200,20893516,20895367,20899696,20904882,20941490,20950002,20969473,20973001,20980333,20981047,21002712,21050865,21111322	20807500,20810884,20813239,20817538,20825198,20827698,20829272,20841028,20849530,20851478,20853677,20855071,20857497,20860517,20862332,20864712,20865262,20879520,20886371,20893636,20895501,20899943,20904971,20942330,20950111,20969596,20973099,20980448,20981227,21002808,21050994,21111383	0.875000
spleen_male_adult_54_years	chr1	89055450	89055465	89055464	-	High_confidence	3	3	7	0.471225	2.521641	chr1	89055429	89055551	LTR|ERVL-MaLR|MLT1K	+	chr1	89053299	89055341	GBP1|ENST00000484970.1	-	89053299,89054681	89053468,89055341	1.000000
spleen_male_adult_54_years	chr3	187021850	187021896	187021850	+	High_confidence	60	114	172	11.578681	6.463098	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.598837
spleen_male_adult_54_years	chr9	129489028	129489029	129489028	+	High_confidence	4	4	7	0.471225	2.521641	chr9	129488969	129489031	SINE|MIR|MIR3	-	chr9	129489099	129512679	LINC00963|ENST00000419300.3	+	129489099,129503322	129489299,129512679	0.857143
spleen_male_adult_54_years	chrX	70453652	70453689	70453688	+	RAMPAGE_only	15	16	29	1.952219	4.142295	chrX	70453648	70453712	DNA|hAT-Ac|OldhAT1	+	chrX	70452304	70505487	DLG3|ENST00000374355.7	+	70452304,70453636,70454213,70479149,70492106,70492520,70493375,70497179,70498519,70499175,70499876,70500470,70500897,70502162	70452755,70453793,70454316,70479264,70492283,70492596,70493475,70497221,70498570,70499277,70500049,70500580,70500989,70505487	0.965517
spleen_male_adult_54_years	chr9	111284841	111284875	111284874	-	High_confidence	40	40	90	6.058612	5.015255	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111272699	111284862	STRG.81713.1	-	111272699,111284619	111272965,111284862	0.822222
spleen_male_adult_54_years	chr4	48546139	48546140	48546139	-	High_confidence	6	7	8	0.538543	2.750000	chr4	48546053	48546089	LINE|CR1|X7C_LINE	-	chr4	48521093	48546759	FRYL|ENST00000513401.5	-	48521093,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066	48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546759	1.000000
spleen_male_adult_54_years	chr1	160560273	160560296	160560273	-	RAMPAGE_only	2	3	9	0.605861	2.750000	chr1	160557755	160561017	LINE|L1|L1PA11	+	chr1	160541097	160579473	CD84|ENST00000368054.7	-	160541097,160549916,160550937,160553377,160553894,160565403,160579391	160548321,160549979,160551035,160553497,160554146,160565745,160579473	0.777778
spleen_male_adult_54_years	chr9	114345863	114345864	114345863	-	High_confidence	23	23	27	1.817584	3.377797	chr9	114345713	114345851	DNA|hAT-Charlie|Charlie17a	-	chr9	114336130	114346774	AKNA|ENST00000492875.1	-	114336130,114341532,114342008,114343707,114346668	114337306,114341725,114342125,114346009,114346774	0.925926
spleen_male_adult_54_years	chr18	28159255	28159256	28159255	-	High_confidence	6	6	9	0.605861	2.947703	chr18	28159142	28159517	LTR|ERVL|LTR79	+	chr18	28011917	28159297	CDH2|ENST00000413878.1	-	28011917,28013682,28147672,28159148	28011992,28013909,28147784,28159297	1.000000
spleen_male_adult_54_years	chr1	166850042	166850083	166850042	+	RAMPAGE_only	2	2	10	0.673179	2.921928	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
spleen_male_adult_54_years	chrX	70613339	70613367	70613339	-	RAMPAGE_only	5	5	16	1.077087	3.240224	chrX	70613122	70616531	LINE|L1|L1M1	+	chrX	70528940	70724292	TEX11|ENST00000374320.6	-	70528940,70529834,70552125,70553305,70554650,70591750,70605400,70606958,70609090,70610502,70623949,70624838,70629610,70651449,70670376,70678803,70682673,70722617,70724075	70529187,70529999,70552246,70553414,70554800,70591823,70605517,70607029,70609177,70610543,70624006,70624924,70629735,70651552,70670514,70678889,70682825,70722696,70724292	0.937500
spleen_male_adult_54_years	chr1	1655448	1655478	1655448	-	RAMPAGE_only	3	3	9	0.605861	2.750000	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.777778
spleen_male_adult_54_years	chr16	2759957	2759990	2759957	+	High_confidence	4	4	18	1.211722	2.641604	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.888889
spleen_male_adult_54_years	chr17	28902298	28902330	28902329	-	High_confidence	5	5	14	0.942451	3.546594	chr17	28901942	28902451	LINE|L2|L2b	+	chr17	28901111	28902126	DHRS13|ENST00000581759.1	-	28901111,28901492	28901301,28902126	0.642857
spleen_male_adult_54_years	chr13	48492622	48492656	48492655	-	High_confidence	15	15	59	3.971757	5.219602	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.694915
spleen_male_adult_54_years	chr14	91462209	91462216	91462209	-	High_confidence	7	7	14	0.942451	2.777363	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.571429
spleen_male_adult_54_years	chr2	6918647	6918680	6918679	-	High_confidence	13	13	52	3.500532	5.378230	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6912275	6918682	RNF144A-AS1|NR_033997.1	-	6912275,6914192,6915822,6916849,6918401	6913664,6914350,6915967,6917224,6918682	0.846154
spleen_male_adult_54_years	chr14	101731384	101731414	101731413	+	High_confidence	45	45	81	5.452751	5.416499	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101731433	101732843	STRG.113056.1	+	101731433,101731787,101732235	101731468,101731976,101732843	0.716049
spleen_male_adult_54_years	chr2	37829161	37829186	37829161	-	High_confidence	7	7	25	1.682948	4.003856	chr2	37828936	37829243	SINE|Alu|AluJr	+	chr2	37826246	37829432	LINC00211|ENST00000413792.5	-	37826246,37828932,37829247	37827878,37829038,37829432	0.960000
spleen_male_adult_54_years	chr2	89245030	89245041	89245040	-	RAMPAGE_only	4	4	8	0.538543	2.807355	chr2	89245031	89245086	SINE|tRNA-RTE|MamSINE1	+	chr2	88857160	89143160	STRG.18380.1	-	88857160,88861220,89142575,89143059	88857683,88861262,89142872,89143160	0.625000
spleen_male_adult_54_years	chr8	129786064	129786092	129786075	-	High_confidence	6	6	20	1.346358	3.747413	chr8	129786052	129786345	SINE|Alu|AluSg7	+	chr8	129751707	129786614	STRG.76405.7	-	129751707,129752105,129752697,129765627,129776101,129777367,129786010	129751891,129752147,129762731,129765793,129776285,129777591,129786614	0.850000
spleen_male_adult_54_years	chrX	147937542	147937575	147937574	+	RAMPAGE_only	5	5	18	1.211722	3.197160	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.147302.6	+	147940580,147943130,147945533,147948682	147940662,147945051,147945616,147950315	1.000000
spleen_male_adult_54_years	chr11	77175226	77175303	77175226	+	High_confidence	93	93	330	22.214911	6.487252	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.963636
spleen_male_adult_54_years	chr22	44181183	44181184	44181183	+	High_confidence	44	44	46	3.096624	4.251221	chr22	44181132	44181213	LINE|L2|L2a	-	chr22	44181335	44206622	PARVG|ENST00000475485.6	+	44181335,44181741,44183317,44185807,44186576,44189113,44190550,44192048,44196156,44196346,44198620,44205756,44206316	44181370,44181917,44183408,44185872,44187878,44189254,44190666,44192129,44196213,44196415,44198722,44205829,44206622	0.934783
spleen_male_adult_54_years	chr2	144319869	144319870	144319869	-	High_confidence	7	7	7	0.471225	2.807355	chr2	144319780	144319934	LINE|RTE-BovB|MamRTE1	+	chr2	144210834	144319870	GTDC1|ENST00000467352.1	-	144210834,144211514,144235675,144317478,144319718	144211237,144211579,144235737,144317588,144319870	0.571429
spleen_male_adult_54_years	chr14	77736978	77736979	77736978	-	High_confidence	10	10	11	0.740497	3.321928	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.818182
spleen_male_adult_54_years	chr16	53445780	53445794	53445780	+	High_confidence	6	6	18	1.211722	3.690117	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.666667
spleen_male_adult_54_years	chr11	73272149	73272150	73272149	+	High_confidence	28	28	36	2.423445	4.558051	chr11	73272030	73272210	SINE|MIR|MIRb	-	chr11	73272141	73298625	P2RY6|NM_001277204.1	+	73272141,73295729,73296484	73272466,73295815,73298625	0.861111
spleen_male_adult_54_years	chr1	89272783	89272860	89272859	-	High_confidence	493	509	4066	273.714637	6.667796	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.951303
spleen_male_adult_54_years	chr5	74103127	74103128	74103127	-	High_confidence	27	28	30	2.019537	4.373557	chr5	74103070	74103603	LTR|ERV1|MER51A	+	chr5	74084067	74103216	LINC02122|ENST00000511395.1	-	74084067,74102739	74084167,74103216	0.733333
spleen_male_adult_54_years	chr9	121207780	121207803	121207793	+	High_confidence	8	10	30	2.019537	4.440224	chr9	121207755	121207923	SINE|Alu|AluJb	-	chr9	121207793	121265186	GSN|ENST00000434663.5	+	121207793,121209295,121210235,121210783,121231164,121265153	121207897,121209397,121210329,121210867,121231303,121265186	0.866667
spleen_male_adult_54_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	13	13	13	0.875133	2.719295	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
spleen_male_adult_54_years	chr12	126772336	126772360	126772336	-	High_confidence	14	14	31	2.086855	3.656565	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126748055	126772356	LINC00944|ENST00000542248.5	-	126748055,126760931,126763414,126772078	126748127,126761045,126763498,126772356	0.838710
spleen_male_adult_54_years	chr19	54616967	54617148	54616967	+	High_confidence	184	199	484	32.581870	7.138305	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54616929	54637556	LILRB1|NM_006669.6	+	54616929,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637556	0.886364
spleen_male_adult_54_years	chr5	140633646	140633680	140633672	-	High_confidence	7	9	19	1.279040	4.037401	chr5	140633624	140633721	LINE|CR1|L3	+	chr5	140631727	140633701	CD14|ENST00000302014.10	-	140631727,140633068	140632980,140633701	1.000000
spleen_male_adult_54_years	chr16	3048617	3048644	3048643	+	RAMPAGE_only	2	2	8	0.538543	2.521641	chr16	3048311	3048805	LINE|L2|L2a	-	chr16	3047530	3056162	MMP25|ENST00000570755.1	+	3047530,3050008,3050253,3055829	3047547,3050144,3050546,3056162	0.750000
spleen_male_adult_54_years	chr11	93499303	93499304	93499303	-	High_confidence	8	8	12	0.807815	2.688722	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	1.000000
spleen_male_adult_54_years	chr5	131316079	131316084	131316083	+	RAMPAGE_only	6	6	13	0.875133	3.392747	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131279638	131393106	STRG.49332.4	+	131279638,131315975,131359208,131385542,131390992,131391828	131281472,131316144,131359547,131385644,131391108,131393106	0.923077
spleen_male_adult_54_years	chr2	217814067	217814068	217814067	-	High_confidence	4	4	6	0.403907	2.584963	chr2	217814000	217814314	SINE|Alu|AluJr	-	chr2	217803797	217814016	TNS1|ENST00000490566.1	-	217803797,217808074,217808602,217809822,217810247,217812367,217813214,217813684	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217814016	1.000000
spleen_male_adult_54_years	chr2	7023758	7023779	7023758	+	RAMPAGE_only	4	4	11	0.740497	3.095795	chr2	7023743	7023814	SINE|MIR|MIRc	-	chr2	6917391	7044179	RNF144A|NM_014746.4	+	6917391,6940947,6996915,7014453,7014711,7020472,7024368,7030125,7039628	6917622,6941147,6997061,7014558,7014772,7020680,7024516,7030215,7044179	0.545455
spleen_male_adult_54_years	chr14	24308782	24308793	24308792	-	RAMPAGE_only	9	10	18	1.211722	3.572431	chr14	24308792	24309154	LTR|ERVL|LTR42	+	chr14	24305186	24311370	CIDEB|NM_014430.2	-	24305186,24305946,24306373,24307370,24307817,24308478,24310648	24305765,24306137,24306523,24307515,24307920,24308830,24311370	0.833333
spleen_male_adult_54_years	chr5	173746148	173746177	173746176	-	High_confidence	7	9	25	1.682948	4.418296	chr5	173745880	173746596	LTR|ERV1|MER4A	+	chr5	173719245	173746211	LINC01484|ENST00000518902.1	-	173719245,173746019	173719543,173746211	0.920000
spleen_male_adult_54_years	chr12	8453160	8453161	8453160	-	High_confidence	9	9	12	0.807815	2.913977	chr12	8453073	8453158	DNA|hAT-Ac|OldhAT1	-	chr12	8415630	8453136	STRG.97116.1	-	8415630,8450431,8453010	8415761,8450569,8453136	0.666667
spleen_male_adult_54_years	chr4	119410617	119410654	119410617	-	High_confidence	18	18	55	3.702485	5.172091	chr4	119410149	119410569	DNA|hAT-Charlie|MER1A	-	chr4	119405522	119410660	LINC01061|NR_037596.1	-	119405522,119410231,119410516	119410138,119410289,119410660	0.963636
spleen_male_adult_54_years	chr11	73269971	73270091	73270090	+	High_confidence	31	31	117	7.876196	5.755446	chr11	73270078	73270271	SINE|MIR|MIRc	-	chr11	73269893	73297805	P2RY6|ENST00000393591.5	+	73269893,73272306,73295729,73296484	73270155,73272466,73295815,73297805	0.897436
spleen_male_adult_54_years	chr17	45237221	45237222	45237221	+	RAMPAGE_only	4	4	7	0.471225	2.521641	chr17	45237157	45237260	LINE|CR1|L3b	+	chr17	45234079	45246475	STRG.125148.2	+	45234079,45236135,45237280,45237545,45238563,45238954,45240475,45241381,45241846,45242340,45243117,45243790,45244818,45244978,45245252,45245631,45245877,45246209	45234200,45236244,45237357,45237639,45238638,45239065,45241230,45241634,45242146,45242465,45243320,45244244,45244899,45245108,45245416,45245733,45245973,45246475	0.714286
spleen_male_adult_54_years	chr4	153687951	153688004	153688003	+	RAMPAGE_only	11	11	38	2.558081	4.662015	chr4	153687920	153688176	LTR|ERV1|MER57A-int	+	chr4	153684289	153713399	STRG.41503.6	+	153684289,153712469	153705232,153713399	1.000000
spleen_male_adult_54_years	chr15	57281628	57281654	57281653	+	High_confidence	7	7	27	1.817584	3.884155	chr15	57281447	57281985	DNA|hAT-Charlie|MER1A	+	chr15	57281646	57286420	TCF12|ENST00000561454.1	+	57281646,57282444,57286156	57281792,57282598,57286420	0.925926
spleen_male_adult_54_years	chr11	117185990	117186013	117186006	+	High_confidence	17	17	67	4.510300	5.304603	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.880597
spleen_male_adult_54_years	chr20	63864225	63864309	63864273	-	High_confidence	3	5	28	1.884902	3.985228	chr20	63864154	63864284	SINE|MIR|MIR	+	chr20	63861211	63864293	AL118506.1|ENST00000601296.2	-	63861211	63864293	1.000000
spleen_male_adult_54_years	chr1	30741966	30741967	30741966	-	RAMPAGE_only	6	6	6	0.403907	2.584963	chr1	30741805	30742192	LINE|L2|L2b	-	chr1	30741688	30757757	LAPTM5|ENST00000476492.1	-	30741688,30757658	30742549,30757757	0.500000
spleen_male_adult_54_years	chr15	92914950	92914974	92914973	+	High_confidence	71	72	167	11.242092	6.550213	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.802395
spleen_male_adult_54_years	chr2	3536839	3536868	3536845	-	High_confidence	6	6	22	1.480994	3.984184	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3533223	3536869	AC108488.1|ENST00000438482.1	-	3533223,3534112,3536723	3533848,3534255,3536869	0.500000
spleen_male_adult_54_years	chr16	11587396	11587475	11587465	-	High_confidence	22	22	74	4.981526	4.795119	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.959459
spleen_male_adult_54_years	chr11	65434402	65434977	65434799	+	RAMPAGE_only	71	71	650	43.756644	6.985499	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.990769
spleen_male_adult_54_years	chr1	166850123	166850125	166850124	+	RAMPAGE_only	6	8	11	0.740497	2.921928	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.909091
spleen_male_adult_54_years	chr14	77565756	77565799	77565756	-	RAMPAGE_only	38	40	57	3.837121	5.258544	chr14	77565271	77565950	LINE|L1|L1MC4a	+	chr14	77552119	77557321	SPTLC2|ENST00000554365.1	-	77552119,77555299,77557040	77552222,77555519,77557321	0.701754
spleen_male_adult_54_years	chr15	80059918	80059933	80059918	+	High_confidence	61	66	158	10.636230	4.628370	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.974684
spleen_male_adult_54_years	chrX	152755152	152755171	152755170	+	High_confidence	16	17	28	1.884902	3.347480	chrX	152755031	152755185	LINE|L1|L1MEh	-	chrX	152755213	152759694	STRG.147538.1	+	152755213,152758906,152759475	152755214,152759021,152759694	0.642857
spleen_male_adult_54_years	chr17	56904314	56904402	56904364	-	High_confidence	4	4	16	1.077087	3.149397	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.875000
spleen_male_adult_54_years	chrY	3002893	3002905	3002893	+	High_confidence	152	154	352	23.695906	6.397393	chrY	3002436	3002992	LTR|ERV1|LTR4	+	chrY	3002997	3098522	STRG.147911.4	+	3002997,3096997	3015086,3098522	0.792614
spleen_male_adult_54_years	chr9	125650395	125650410	125650395	-	High_confidence	4	6	13	0.875133	3.251629	chr9	125649959	125650542	LINE|L2|L2b	+	chr9	125444500	125650417	MAPKAP1|ENST00000420643.5	-	125444500,125467971,125484442,125543058,125559632,125585554,125599834,125650363	125444598,125468109,125484583,125543168,125559809,125585727,125599927,125650417	0.615385
spleen_male_adult_54_years	chr6	26474345	26474346	26474345	+	RAMPAGE_only	17	17	24	1.615630	4.175736	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.500000
spleen_male_adult_54_years	chr16	29963560	29963561	29963560	+	High_confidence	11	13	14	0.942451	3.521641	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.714286
spleen_male_adult_54_years	chr13	74231426	74231454	74231453	+	High_confidence	7	7	19	1.279040	4.142664	chr13	74231443	74231557	SINE|MIR|MIRc	-	chr13	74231456	74259976	LINC00402|ENST00000419499.1	+	74231456,74256932	74231752,74259976	0.526316
spleen_male_adult_54_years	chr4	185933654	185933655	185933654	-	High_confidence	12	12	12	0.807815	3.084963	chr4	185933361	185933839	LTR|ERVL-MaLR|MLT1C	-	chr4	185775280	185933370	SORBS2|ENST00000488562.1	-	185775280,185894296,185932935	185775366,185894373,185933370	0.583333
spleen_male_adult_54_years	chr14	91125532	91125533	91125532	+	High_confidence	5	5	8	0.538543	2.750000	chr14	91125427	91125670	LTR|ERVL-MaLR|MLT1K	-	chr14	91125538	91170122	DGLUCY|ENST00000521064.5	+	91125538,91157638,91160265,91167224,91170002	91125624,91157690,91160397,91167378,91170122	0.625000
spleen_male_adult_54_years	chr7	131108707	131108708	131108707	-	RAMPAGE_only	56	56	61	4.106393	4.994742	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130941759	131109916	LINC-PINT|NR_109855.1	-	130941759,130945719,130984052,131107719,131109736	130941858,130945835,130984109,131108803,131109916	0.934426
spleen_male_adult_54_years	chr7	102973485	102973526	102973491	+	High_confidence	47	47	206	13.867490	6.916375	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973521	102988856	NFE4|ENST00000420058.1	+	102973521,102978380,102988032,102988374	102973771,102978520,102988232,102988856	0.674757
spleen_male_adult_54_years	chr8	87044429	87044466	87044465	+	RAMPAGE_only	16	16	69	4.644936	5.144001	chr8	87044391	87044993	LTR|ERV1|MER61F	-	chr8	87205993	87353876	CNBD1|ENST00000620844.1	+	87205993,87236918,87284677,87286538,87351684,87353635,87353871	87206138,87237112,87284815,87286671,87351794,87353786,87353876	0.739130
spleen_male_adult_54_years	chr12	8453065	8453093	8453089	-	High_confidence	6	6	20	1.346358	3.405822	chr12	8453073	8453158	DNA|hAT-Ac|OldhAT1	-	chr12	8415630	8453136	STRG.97116.1	-	8415630,8450431,8453010	8415761,8450569,8453136	0.750000
spleen_male_adult_54_years	chr20	1467679	1467700	1467679	-	High_confidence	20	20	69	4.644936	4.594355	chr20	1467673	1468159	LTR|ERV1|LTR10B	+	chr20	1442161	1467692	NSFL1C|ENST00000216879.8	-	1442161,1445665,1452492,1453030,1454212,1454966,1458199,1464328,1466719	1443911,1445830,1452630,1453140,1454305,1455132,1458274,1464426,1467692	1.000000
spleen_male_adult_54_years	chr3	11274445	11274446	11274445	+	RAMPAGE_only	5	5	8	0.538543	2.750000	chr3	11274206	11274592	LINE|L2|L2b	-	chr3	11272402	11307008	ATG7|ENST00000444619.5	+	11272402,11282192,11298685,11299361,11306942	11272430,11282438,11298855,11299416,11307008	0.750000
spleen_male_adult_54_years	chr8	47601263	47601285	47601279	+	RAMPAGE_only	5	6	15	1.009769	3.272906	chr8	47601256	47601388	SINE|MIR|MIRb	-	chr8	47654087	47735883	SPIDR|ENST00000519141.5	+	47654087,47673800,47700402,47701720,47701955,47712661,47713488,47727199,47728932,47729411,47735306	47654149,47673941,47700490,47701864,47702015,47712872,47713641,47727293,47729047,47729465,47735883	0.800000
spleen_male_adult_54_years	chr3	188947212	188947237	188947236	+	High_confidence	2	2	6	0.403907	2.584963	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.500000
spleen_male_adult_54_years	chrY	21175029	21175041	21175040	+	High_confidence	8	9	14	0.942451	3.378783	chrY	21174815	21175167	LTR|ERVK|HERVK22-int	+	chrY	21174718	21175937	STRG.148409.1	+	21174718	21175937	0.571429
spleen_male_adult_54_years	chr1	148712509	148712543	148712533	-	High_confidence	23	29	89	5.991294	5.643833	chr1	148712528	148712895	LTR|ERVL-MaLR|MLT1M	+	chr1	148710660	148712560	STRG.7513.12	-	148710660	148712560	0.505618
spleen_male_adult_54_years	chr12	51302234	51302235	51302234	-	RAMPAGE_only	11	11	13	0.875133	3.546594	chr12	51302187	51302333	LINE|L2|L2c	-	chr12	51281037	51324115	BIN2|ENST00000604560.5	-	51281037,51284715,51291590,51295795,51297088,51299202,51299606,51302019,51302685,51303086,51324021	51281528,51284780,51292344,51295878,51297164,51299288,51299714,51302115,51302780,51303141,51324115	0.769231
spleen_male_adult_54_years	chr14	23636366	23636367	23636366	+	High_confidence	9	9	11	0.740497	3.095795	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	1.000000
spleen_male_adult_54_years	chr2	1549315	1549319	1549315	+	RAMPAGE_only	5	5	11	0.740497	3.321928	chr2	1549079	1549368	LTR|ERV1|MER39	+	chr2	1552444	1554701	AC141930.2|ENST00000640435.1	+	1552444,1552737,1554169	1552554,1552857,1554701	0.545455
spleen_male_adult_54_years	chr17	62520827	62520841	62520840	+	RAMPAGE_only	3	3	6	0.403907	2.584963	chr17	62520890	62521168	SINE|Alu|AluJr	+	chr17	62552304	62576744	TLK2|ENST00000578697.1	+	62552304,62560015,62565000,62573214,62576708	62552397,62560126,62565137,62573367,62576744	0.500000
spleen_male_adult_54_years	chr19	5680240	5680268	5680240	-	High_confidence	4	4	12	0.807815	2.845351	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.916667
spleen_male_adult_54_years	chr6	31587007	31587021	31587009	+	High_confidence	70	112	241	16.223617	6.341766	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.875519
spleen_male_adult_54_years	chr6	11728392	11728404	11728398	-	High_confidence	3	4	9	0.605861	3.169925	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.555556
spleen_male_adult_54_years	chr15	80017766	80017793	80017792	-	RAMPAGE_only	40	49	155	10.434277	4.421818	chr15	80016339	80017800	LTR|ERV1|LTR12C	+	chr15	79960888	79971446	BCL2A1|ENST00000267953.3	-	79960888,79970699	79961174,79971446	0.877419
spleen_male_adult_54_years	chr7	6044569	6044616	6044569	-	RAMPAGE_only	3	4	15	1.009769	2.753434	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6041152	6046437	EIF2AK1|ENST00000470168.1	-	6041152,6042932,6044561,6046070	6041219,6042993,6044661,6046437	0.933333
spleen_male_adult_54_years	chr22	39066255	39066335	39066326	+	High_confidence	15	22	74	4.981526	5.703389	chr22	39066093	39066470	LTR|ERV1|LTR7	-	chr22	39066274	39069213	STRG.141453.1	+	39066274,39068708	39066358,39069213	0.567568
spleen_male_adult_54_years	chr14	100569593	100569641	100569593	-	High_confidence	9	10	40	2.692717	4.721612	chr14	100569527	100569624	LINE|L2|L2b	+	chr14	100538887	100569558	BEGAIN|ENST00000556188.5	-	100538887,100540495,100543857,100544999,100546500,100567910,100569426	100539315,100540579,100543965,100545066,100546662,100567939,100569558	0.800000
spleen_male_adult_54_years	chr1	39026177	39026199	39026198	+	High_confidence	4	4	14	0.942451	3.238901	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.857143
spleen_male_adult_54_years	chr16	5058773	5058788	5058779	-	RAMPAGE_only	6	6	19	1.279040	4.037401	chr16	5058754	5058790	DNA|hAT|MER53	-	chr16	5044121	5065971	C16orf89|ENST00000474471.7	-	5044121,5047877,5055245,5055686,5056052,5058492,5060285,5062424,5065700	5044836,5047964,5055350,5055782,5056188,5058610,5060436,5062574,5065971	0.631579
spleen_male_adult_54_years	chr2	110118141	110118147	110118146	-	RAMPAGE_only	8	8	19	1.279040	2.755058	chr2	110117625	110118184	LINE|L1|L1MD2	-	chr2	110083869	110116566	MALL|NM_005434.4	-	110083869,110087571,110091602,110115687	110085757,110087697,110091770,110116566	0.842105
spleen_male_adult_54_years	chr1	222892285	222892330	222892285	+	RAMPAGE_only	2	3	12	0.807815	3.251629	chr1	222892051	222892649	DNA|hAT?|MER99	-	chr1	222872270	222979862	DISP1|ENST00000360254.3	+	222872270,222928429,222942806,222979622	222872432,222928570,222943332,222979862	0.500000
spleen_male_adult_54_years	chr19	55255762	55255782	55255768	-	High_confidence	13	14	29	1.952219	3.730758	chr19	55255671	55256025	LINE|L2|L2b	+	chr19	55245343	55255769	PPP6R1|ENST00000592242.1	-	55245343,55245491,55246876,55255674	55245402,55245678,55247109,55255769	0.793103
spleen_male_adult_54_years	chr15	45631862	45631867	45631862	+	High_confidence	3	3	8	0.538543	2.521641	chr15	45631881	45632005	LINE|L2|L2b	+	chr15	45631147	45691280	SQOR|ENST00000568606.5	+	45631147,45631926,45658906,45661954,45669927,45673606,45676100,45682477,45688336,45689038,45690972	45631230,45632015,45659157,45662125,45669981,45673801,45676310,45682661,45688404,45689217,45691280	0.875000
spleen_male_adult_54_years	chr12	55930641	55930642	55930641	+	High_confidence	10	10	10	0.673179	2.846439	chr12	55930357	55930665	SINE|Alu|AluSc8	-	chr12	55930971	55954015	DGKA|ENST00000331886.9	+	55930971,55936422,55937016,55937407,55937977,55938510,55938914,55939185,55939414,55940081,55940313,55940623,55940896,55941251,55941509,55941997,55942173,55951622,55952034,55952340,55952733,55953039,55953349,55953684	55931344,55936567,55937090,55937543,55938052,55938560,55938989,55939305,55939529,55940170,55940433,55940722,55940980,55941325,55941584,55942083,55942263,55951783,55952099,55952431,55952932,55953160,55953410,55954015	0.500000
spleen_male_adult_54_years	chr7	30561553	30561570	30561569	-	RAMPAGE_only	5	5	14	0.942451	3.235926	chr7	30561212	30561820	DNA|hAT?|MER99	+	chr7	30548356	30564617	GARS-DT|ENST00000355837.4	-	30548356,30563722	30562128,30564617	0.571429
spleen_male_adult_54_years	chr5	178668010	178668031	178668010	-	High_confidence	34	34	102	6.866427	5.268459	chr5	178667978	178668059	LINE|L2|L2	+	chr5	178667084	178668321	STRG.51608.1	-	178667084	178668321	0.950980
spleen_male_adult_54_years	chr9	131121451	131121701	131121451	+	RAMPAGE_only	59	59	228	15.348484	5.999993	chr9	131121449	131121629	SINE|MIR|MIR3	-	chr9	131096550	131123145	AIF1L|ENST00000372300.5	+	131096550,131096801,131111596,131114576,131117755,131120234	131096660,131096863,131111663,131114618,131117847,131123145	0.995614
spleen_male_adult_54_years	chr15	45631147	45631148	45631147	+	High_confidence	9	9	11	0.740497	2.921928	chr15	45630952	45631306	LTR|ERVL-MaLR|THE1A	+	chr15	45631147	45691280	SQOR|ENST00000568606.5	+	45631147,45631926,45658906,45661954,45669927,45673606,45676100,45682477,45688336,45689038,45690972	45631230,45632015,45659157,45662125,45669981,45673801,45676310,45682661,45688404,45689217,45691280	0.909091
spleen_male_adult_54_years	chr6	137218709	137218760	137218725	-	High_confidence	4	4	16	1.077087	3.625000	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.875000
spleen_male_adult_54_years	chr12	9065161	9065181	9065180	+	High_confidence	5	5	14	0.942451	3.378783	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.500000
spleen_male_adult_54_years	chr16	11670611	11670646	11670611	+	RAMPAGE_only	9	9	31	2.086855	4.254196	chr16	11670570	11670680	SINE|MIR|MIRc	-	chr16	11668432	11679159	SNN|NM_003498.5	+	11668432,11675974	11668540,11679159	0.741935
spleen_male_adult_54_years	chr9	124804275	124804336	124804335	+	RAMPAGE_only	4	4	18	1.211722	3.734522	chr9	124804356	124804442	DNA|hAT-Charlie|MER58B	+	chr9	124800873	124814891	OLFML2A|NM_001282715.1	+	124800873,124801413,124804093,124807780,124809807	124801074,124801663,124804342,124807966,124814891	0.944444
spleen_male_adult_54_years	chr11	73272240	73272248	73272240	+	High_confidence	12	12	19	1.279040	3.826875	chr11	73272218	73272327	SINE|MIR|MIRc	+	chr11	73272201	73298617	P2RY6|ENST00000393590.2	+	73272201,73296484	73272466,73298617	0.842105
spleen_male_adult_54_years	chr20	35605288	35605326	35605298	-	High_confidence	8	9	29	1.952219	4.513153	chr20	35605067	35605498	LINE|L2|L2c	+	chr20	35602521	35605309	STRG.136403.2	-	35602521,35602688,35603009,35603258,35603796,35604303,35604529,35605101	35602607,35602751,35603141,35603319,35603967,35604345,35604621,35605309	0.758621
spleen_male_adult_54_years	chr1	54172723	54172734	54172733	-	RAMPAGE_only	6	6	11	0.740497	3.121928	chr1	54172537	54172738	LINE|L2|L2b	+	chr1	54138994	54153770	CDCP2|ENST00000371330.1	-	54138994,54141097,54144465,54152843	54140106,54141433,54144813,54153770	0.636364
spleen_male_adult_54_years	chr1	89272627	89272665	89272627	-	High_confidence	8	8	58	3.904439	5.038430	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89262697	89272804	GBP5|ENST00000443807.1	-	89262697,89263735,89264685,89266345,89266956,89267416,89268728,89269365	89262785,89263948,89264966,89266588,89267153,89267526,89268856,89272804	0.982759
spleen_male_adult_54_years	chr16	20674497	20674498	20674497	+	High_confidence	9	9	11	0.740497	2.594907	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.909091
spleen_male_adult_54_years	chr19	2072288	2072289	2072288	-	RAMPAGE_only	12	12	15	1.009769	3.378783	chr19	2072158	2072453	SINE|Alu|AluSx	+	chr19	2071035	2096270	MOB3A|NM_130807.2	-	2071035,2076810,2078139,2085174,2096225	2073424,2077013,2078679,2085328,2096270	0.933333
spleen_male_adult_54_years	chr6	2881285	2881286	2881285	-	High_confidence	50	51	51	3.433214	4.893661	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.960784
spleen_male_adult_54_years	chr1	7913248	7913268	7913267	-	RAMPAGE_only	3	3	7	0.471225	2.584963	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7847611	7853491	UTS2|NM_021995.2	-	7847611,7849639,7850811,7852900,7853306	7847882,7849683,7850922,7852923,7853491	0.571429
spleen_male_adult_54_years	chr17	36074607	36074613	36074607	+	High_confidence	8	8	20	1.346358	3.984184	chr17	36074286	36074651	DNA|hAT-Charlie|MER58B	+	chr17	36074517	36077362	STRG.124537.1	+	36074517,36076709	36074848,36077362	0.750000
spleen_male_adult_54_years	chr1	26301693	26301700	26301699	-	RAMPAGE_only	3	3	7	0.471225	2.584963	chr1	26301608	26301669	LINE|L2|L2	-	chr1	26285942	26303016	UBXN11|ENST00000442942.6	-	26285942,26294204,26296918,26297426,26297961,26301693,26302812	26286037,26294331,26296995,26297481,26298062,26301722,26303016	0.857143
spleen_male_adult_54_years	chr12	108635848	108635849	108635848	+	High_confidence	237	238	248	16.694843	6.548958	chr12	108635755	108635962	SINE|MIR|MIRb	-	chr12	108636079	108636549	STRG.102799.1	+	108636079	108636549	0.762097
spleen_male_adult_54_years	chr1	155058715	155058785	155058784	+	High_confidence	6	6	22	1.480994	3.516028	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.772727
spleen_male_adult_54_years	chrY	4036428	4036532	4036531	+	High_confidence	17	17	88	5.923976	5.113460	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	0.943182
spleen_male_adult_54_years	chr6	149896005	149896011	149896010	-	High_confidence	5	7	10	0.673179	2.503258	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.800000
spleen_male_adult_54_years	chr6	11728442	11728453	11728452	-	High_confidence	3	3	8	0.538543	2.521641	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.625000
spleen_male_adult_54_years	chr9	89479889	89479890	89479889	-	High_confidence	453	455	483	32.514552	5.039763	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89381055	89479890	STRG.80663.2	-	89381055,89381173,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89418362,89455887,89474538,89479571	89381098,89386105,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89418437,89455953,89475550,89479890	0.946170
spleen_male_adult_54_years	chr8	11493990	11494028	11493990	+	High_confidence	12	13	57	3.837121	5.266843	chr8	11493862	11494036	SINE|MIR|MIRb	-	chr8	11494000	11564604	BLK|ENST00000259089.8	+	11494000,11543223,11546051,11548031,11549023,11550158,11554742,11555331,11556657,11557961,11561301,11562978,11563902	11494591,11543347,11546103,11548125,11549122,11550262,11554889,11555484,11556837,11558038,11561452,11563110,11564604	0.894737
spleen_male_adult_54_years	chr11	58578102	58578156	58578132	-	High_confidence	25	29	112	7.539606	5.575247	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.732143
spleen_male_adult_54_years	chr19	44914313	44914322	44914321	+	High_confidence	28	29	44	2.961988	4.615809	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.636364
spleen_male_adult_54_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	32	32	41	2.760034	5.028992	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100738442	100913524	ARHGAP42|ENST00000534060.5	+	100738442,100770342,100795104,100816714,100859553,100913451	100738498,100770438,100795166,100816856,100859625,100913524	0.512195
spleen_male_adult_54_years	chr6	31582626	31582650	31582649	+	RAMPAGE_only	3	3	7	0.471225	2.807355	chr6	31582632	31582783	SINE|MIR|MIR3	-	chr6	31586123	31588909	LST1|ENST00000418507.6	+	31586123,31587199,31587943,31588517	31586315,31587318,31587966,31588909	0.571429
spleen_male_adult_54_years	chr6	128241286	128241338	128241286	-	High_confidence	10	10	55	3.702485	4.180649	chr6	128241276	128241454	DNA|hAT-Charlie|MER5A	+	chr6	128184431	128241299	PTPRK|ENST00000368205.7	-	128184431,128218921,128240034,128241222	128184725,128219096,128240150,128241299	0.945455
spleen_male_adult_54_years	chr19	40754503	40754504	40754503	+	RAMPAGE_only	8	9	11	0.740497	2.646439	chr19	40754454	40754694	LINE|L2|L2c	-	chr19	40757035	40759640	SNRPA|ENST00000598452.1	+	40757035,40759430	40757504,40759640	0.636364
spleen_male_adult_54_years	chr2	11345436	11345456	11345455	-	High_confidence	6	6	12	0.807815	3.251629	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11179758	11345407	ROCK2|NM_001321643.1	-	11179758,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345407	0.583333
spleen_male_adult_54_years	chr2	72693353	72693367	72693353	-	RAMPAGE_only	26	33	46	3.096624	4.070205	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.826087
spleen_male_adult_54_years	chr14	50756715	50756753	50756741	-	RAMPAGE_only	6	7	27	1.817584	4.310443	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.925926
spleen_male_adult_54_years	chr22	44180918	44180951	44180950	+	High_confidence	5	8	26	1.750266	3.946223	chr22	44180997	44181117	LINE|L2|L2c	+	chr22	44180889	44208469	PARVG|NM_022141.6	+	44180889,44181741,44183317,44185807,44187775,44189113,44190550,44192048,44193800,44196154,44196346,44198620,44205756,44206316	44181185,44181917,44183408,44185872,44187878,44189254,44190666,44192104,44193823,44196213,44196415,44198722,44205829,44208469	0.846154
spleen_male_adult_54_years	chrY	13888933	13888934	13888933	+	High_confidence	15	15	15	1.009769	3.323231	chrY	13887678	13889346	LTR|ERV1|LTR12C	+	chrY	13887995	13889629	STRG.148152.1	+	13887995	13889629	0.933333
spleen_male_adult_54_years	chr9	105065044	105065076	105065062	-	High_confidence	4	5	20	1.346358	3.747413	chr9	105065019	105065092	SINE|MIR|MIR	+	chr9	105064262	105064776	STRG.81514.1	-	105064262	105064776	0.650000
spleen_male_adult_54_years	chr16	50293075	50293076	50293075	+	RAMPAGE_only	10	10	10	0.673179	2.721928	chr16	50292992	50293145	LTR|ERVL-MaLR|MLT1K	-	chr16	50288076	50310529	ADCY7|ENST00000567277.6	+	50288076,50290456,50291735,50292675,50293353,50294639,50298903,50300714,50301081,50304359,50304924,50305502,50305776,50307049,50308326,50308666,50309547,50310453	50288350,50290660,50291897,50292825,50293502,50294751,50299031,50300873,50301214,50304516,50304959,50305586,50305849,50307147,50308411,50308792,50309646,50310529	0.700000
spleen_male_adult_54_years	chr3	139344535	139344548	139344547	+	High_confidence	43	43	101	6.799109	5.155658	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.861386
spleen_male_adult_54_years	chr20	3795750	3795823	3795750	+	High_confidence	18	18	118	7.943514	5.812272	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
spleen_male_adult_54_years	chr7	100349884	100349885	100349884	+	RAMPAGE_only	21	21	22	1.480994	4.011365	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336242	100351900	STRG.66161.12	+	100336242,100338178,100338772,100345864,100349716,100351257	100336337,100338264,100338889,100345968,100349887,100351900	0.954545
spleen_male_adult_54_years	chr4	26762821	26762842	26762821	+	RAMPAGE_only	5	5	11	0.740497	3.321928	chr4	26762573	26763019	LTR|ERVL-MaLR|MLT1D	+	chr4	26764089	26770688	STRG.37181.6	+	26764089,26769732,26770542	26764737,26770390,26770688	0.727273
spleen_male_adult_54_years	chr3	65987813	65987868	65987813	-	RAMPAGE_only	2	2	13	0.875133	2.815072	chr3	65987592	65987867	SINE|Alu|AluJb	-	chr3	65987096	65989669	STRG.29499.1	-	65987096	65989669	0.846154
spleen_male_adult_54_years	chr8	12522253	12522264	12522253	+	RAMPAGE_only	2	2	7	0.471225	2.521641	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12565132	12566774	STRG.70698.1	+	12565132	12566774	0.714286
spleen_male_adult_54_years	chr1	246417412	246417423	246417412	-	High_confidence	6	6	11	0.740497	2.913977	chr1	246417275	246418033	LTR|ERV1|LTR8B	-	chr1	245749339	246417412	SMYD3|NM_022743.2	-	245749339,245764040,245858495,245863798,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246417295	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246417412	0.545455
spleen_male_adult_54_years	chr5	176943347	176943393	176943347	-	RAMPAGE_only	2	2	10	0.673179	3.121928	chr5	176943235	176943320	DNA|hAT-Charlie|Charlie10	-	chr5	176905065	176970793	UIMC1|ENST00000510698.2	-	176905065,176906010,176907113,176908522,176911310,176943334,176951473,176955958,176958092,176969600,176970741	176905492,176906047,176907177,176908694,176911389,176943488,176951577,176956035,176958154,176969706,176970793	0.700000
spleen_male_adult_54_years	chr11	65431680	65432065	65432064	+	RAMPAGE_only	32	32	259	17.435340	6.149886	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.988417
spleen_male_adult_54_years	chr11	65382641	65382692	65382645	-	High_confidence	10	10	33	2.221491	4.657882	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65379452	65382645	SLC25A45|ENST00000529962.5	-	65379452,65379866,65380131,65380533,65381874,65382485	65379561,65379938,65380175,65380622,65381969,65382645	0.636364
spleen_male_adult_54_years	chr1	97904654	97904676	97904654	-	RAMPAGE_only	97	111	254	17.098750	6.997816	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.622047
spleen_male_adult_54_years	chr3	44439852	44439897	44439874	-	RAMPAGE_only	30	34	197	13.261629	5.880502	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431719	44477670	ZNF445|ENST00000396077.7	-	44431719,44449512,44450446,44450867,44451313,44455120,44458243,44477590	44448739,44449623,44450573,44450962,44451482,44455696,44458364,44477670	0.614213
spleen_male_adult_54_years	chr2	217842161	217842182	217842179	-	High_confidence	15	15	72	4.846890	5.564858	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.777778
spleen_male_adult_54_years	chr11	65429860	65430816	65430815	+	RAMPAGE_only	127	129	1491	100.371009	7.430951	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
spleen_male_adult_54_years	chr13	27445119	27445120	27445119	-	RAMPAGE_only	6	6	8	0.538543	2.750000	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.875000
spleen_male_adult_54_years	chr19	18848972	18849013	18848972	+	High_confidence	16	16	40	2.692717	4.879506	chr19	18848903	18848975	DNA|TcMar-Tigger|Tigger15a	+	chr19	18849165	18852254	UPF1|ENST00000600310.5	+	18849165,18850074,18850687,18852134	18849446,18850242,18850868,18852254	0.750000
spleen_male_adult_54_years	chr3	72100400	72100422	72100421	-	High_confidence	6	7	18	1.211722	3.852169	chr3	72100285	72100568	DNA|hAT-Charlie|MER102b	-	chr3	72035299	72100427	LINC00877|ENST00000468646.6	-	72035299,72055860,72059686,72060509,72060802,72099903,72100168	72036520,72055962,72060109,72060611,72061094,72100010,72100427	0.666667
spleen_male_adult_54_years	chr4	26858144	26858145	26858144	+	High_confidence	9	10	10	0.673179	2.641604	chr4	26858025	26858225	SINE|MIR|MIRb	-	chr4	26858247	26858919	STIM2|ENST00000478425.1	+	26858247,26858612	26858347,26858919	0.500000
spleen_male_adult_54_years	chr22	50756934	50756950	50756949	+	High_confidence	3	3	7	0.471225	2.521641	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.571429
spleen_male_adult_54_years	chr17	59619888	59619929	59619894	+	High_confidence	314	358	1305	87.849877	6.287651	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.936398
spleen_male_adult_54_years	chr5	150640300	150640359	150640347	+	High_confidence	77	80	237	15.954346	6.315799	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640310	150659211	STRG.50492.4	+	150640310,150647943,150656403	150640425,150650303,150659211	0.987342
spleen_male_adult_54_years	chr7	2242922	2242923	2242922	+	High_confidence	9	9	9	0.605861	3.169925	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.888889
spleen_male_adult_54_years	chr11	12195914	12195968	12195940	+	High_confidence	3	6	15	1.009769	3.664498	chr11	12195751	12196592	LINE|L2|L2	-	chr11	12195944	12197811	MICAL2|ENST00000532166.5	+	12195944,12197486	12196200,12197811	0.733333
spleen_male_adult_54_years	chr21	29077486	29077517	29077486	+	High_confidence	22	22	54	3.635167	4.769548	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.648148
spleen_male_adult_54_years	chr3	46463614	46463654	46463653	-	High_confidence	30	34	92	6.193248	5.122316	chr3	46463529	46463617	LTR|Gypsy|MamGypsy2-LTR	-	chr3	46436004	46463671	LTF|NM_001199149.1	-	46436004,46437939,46439295,46441415,46443440,46445280,46446439,46447307,46448862,46449853,46450494,46454304,46455294,46455795,46456289,46459655,46463443	46436229,46438129,46439480,46441483,46443582,46445436,46446493,46447398,46449017,46450028,46450673,46454360,46455442,46455978,46456398,46459819,46463671	0.923913
spleen_male_adult_54_years	chr10	103181328	103181329	103181328	-	High_confidence	19	19	24	1.615630	4.053509	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103169283	103181320	NT5C2|ENST00000467380.1	-	103169283,103174857,103181184	103169449,103174982,103181320	0.500000
spleen_male_adult_54_years	chr9	134373102	134373130	134373102	+	High_confidence	29	31	91	6.125930	5.766213	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134373015	134440689	STRG.82967.2	+	134373015,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134373180,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440689	0.582418
spleen_male_adult_54_years	chr9	62897412	62897441	62897430	+	High_confidence	4	4	12	0.807815	3.251629	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.750000
spleen_male_adult_54_years	chr1	78620899	78620918	78620899	+	High_confidence	6	6	16	1.077087	3.456565	chr1	78620580	78620966	LINE|L1|L1MA4	-	chr1	78620468	78637161	STRG.4790.6	+	78620468,78627905,78629719,78635336	78620571,78628999,78629915,78637161	0.937500
spleen_male_adult_54_years	chr8	23095900	23095903	23095902	+	RAMPAGE_only	10	18	18	1.211722	3.530493	chr8	23095732	23096086	LTR|ERVL-MaLR|THE1D	+	chr8	23102589	23117437	TNFRSF10C|ENST00000356864.3	+	23102589,23111719,23114656,23115507,23116640	23103181,23111825,23114770,23115616,23117437	0.777778
spleen_male_adult_54_years	chr6	137218805	137218822	137218821	-	High_confidence	6	6	10	0.673179	2.725481	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.700000
spleen_male_adult_54_years	chr14	76864137	76864208	76864170	-	High_confidence	16	20	108	7.270335	5.415484	chr14	76863961	76864121	LTR|ERVL|LTR67B	-	chr14	76837865	76864126	STRG.111799.1	-	76837865,76863961	76838001,76864126	0.629630
spleen_male_adult_54_years	chr12	60119346	60119374	60119373	+	High_confidence	4	4	12	0.807815	3.027169	chr12	60119277	60119646	LINE|L2|L2b	-	chr12	60119463	60214409	STRG.100325.1	+	60119463,60125247,60127181,60175665,60208204	60119612,60125347,60127281,60175757,60214409	0.916667
spleen_male_adult_54_years	chr21	41395710	41395715	41395714	+	RAMPAGE_only	5	7	11	0.740497	3.121928	chr21	41395654	41395771	LINE|RTE-BovB|MamRTE1	+	chr21	41397630	41399766	MX2|ENST00000493753.1	+	41397630,41398896,41399195	41397691,41399019,41399766	0.727273
spleen_male_adult_54_years	chr16	11774363	11774393	11774370	-	High_confidence	3	3	9	0.605861	2.503258	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	0.888889
spleen_male_adult_54_years	chr5	109383446	109383463	109383446	-	High_confidence	13	13	34	2.288809	4.062500	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.911765
spleen_male_adult_54_years	chr6	6587401	6587402	6587401	-	RAMPAGE_only	21	22	22	1.480994	4.297079	chr6	6587337	6587525	DNA|hAT-Charlie|MER5A	-	chr6	6562097	6569662	STRG.52411.1	-	6562097,6569417	6564388,6569662	0.681818
spleen_male_adult_54_years	chr4	86453161	86453203	86453161	-	High_confidence	34	37	210	14.136762	5.138212	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86159297	86453162	MAPK10|ENST00000642049.1	-	86159297,86194318,86354529,86370713,86453029	86159467,86194407,86354644,86370867,86453162	0.880952
spleen_male_adult_54_years	chr8	102096528	102096536	102096528	-	High_confidence	3	3	7	0.471225	2.807355	chr8	102096380	102096920	LTR|ERV1|MER51A	+	chr8	102096077	102096787	STRG.74954.1	-	102096077	102096787	0.571429
spleen_male_adult_54_years	chr14	73366897	73366904	73366897	-	High_confidence	4	4	12	0.807815	2.845351	chr14	73366875	73367023	SINE|MIR|MIRb	+	chr14	73276548	73366920	NUMB|ENST00000560335.5	-	73276548,73282358,73287109,73292733,73297210,73316389,73323129,73355625,73366896	73277293,73282505,73287314,73292874,73297285,73316422,73323204,73355766,73366920	0.916667
spleen_male_adult_54_years	chr1	174874418	174874439	174874418	+	High_confidence	35	36	103	6.933745	5.821543	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.776699
spleen_male_adult_54_years	chr2	55618850	55618873	55618869	-	High_confidence	6	6	23	1.548312	3.880180	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.739130
spleen_male_adult_54_years	chr20	48660170	48660186	48660170	-	RAMPAGE_only	2	2	8	0.538543	3.000000	chr20	48660120	48660273	DNA|hAT-Charlie|MER102b	+	chr20	48624251	48827883	PREX1|ENST00000371941.3	-	48624251,48627547,48627860,48629448,48630727,48632276,48632495,48634675,48636462,48637710,48639765,48642167,48642406,48644408,48645850,48649299,48649995,48650893,48651395,48652585,48653360,48655289,48657039,48658135,48659918,48666282,48676192,48679359,48679650,48681234,48688656,48690946,48692671,48700752,48708259,48726289,48734545,48745024,48747808,48827641	48625927,48627615,48627963,48629621,48630794,48632391,48632639,48634775,48636683,48637752,48639894,48642258,48642489,48644497,48646057,48649576,48650206,48651055,48651583,48652706,48653497,48655375,48657188,48658228,48660061,48666355,48676268,48679409,48679754,48681335,48688804,48691096,48692790,48700886,48708421,48726391,48734650,48745147,48747880,48827883	0.750000
spleen_male_adult_54_years	chr1	21551244	21551267	21551244	+	High_confidence	3	4	12	0.807815	3.277613	chr1	21551216	21551436	LINE|L2|L2c	-	chr1	21551278	21578012	ALPL|ENST00000374832.5	+	21551278,21553977,21560625,21561096,21563109,21564040,21568103,21570304,21573664,21575732,21576521,21577382	21551428,21554142,21560745,21561212,21563284,21564216,21568247,21570374,21573799,21575924,21576641,21578012	0.833333
spleen_male_adult_54_years	chr12	7502504	7502544	7502522	-	High_confidence	13	13	56	3.769803	5.097299	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.946429
spleen_male_adult_54_years	chr14	101819779	101819799	101819779	+	RAMPAGE_only	5	5	12	0.807815	3.251629	chr14	101819651	101819923	SINE|Alu|AluJb	-	chr14	101761861	101821098	PPP2R5C|ENST00000556068.5	+	101761861,101762904,101786017,101818026	101761920,101762970,101786183,101821098	0.583333
spleen_male_adult_54_years	chr15	63497726	63497786	63497779	-	High_confidence	71	72	324	21.811004	6.483853	chr15	63497648	63498105	LINE|L2|L2c	+	chr15	63489383	63497751	STRG.116590.1	-	63489383,63497653	63491172,63497751	0.592593
spleen_male_adult_54_years	chr1	10282518	10282530	10282518	+	High_confidence	4	4	9	0.605861	3.000000	chr1	10282562	10282741	LINE|CR1|L3	+	chr1	10282449	10381631	STRG.511.2	+	10282449,10291081,10292046,10295085,10295659,10296581,10296896,10297173,10320042,10321708,10323883,10324757,10334519,10336656,10337073,10337370,10339768,10342049,10343231,10345844,10347760,10348648,10352630,10360928,10361691,10363282,10365099,10365408,10368466,10371140,10374315,10374853,10375254,10376544	10282533,10291161,10292122,10295165,10295766,10296665,10297077,10297246,10320136,10321857,10324062,10324895,10334638,10336742,10337203,10337533,10339859,10342168,10343287,10345953,10347827,10348733,10352736,10361043,10361825,10363344,10365245,10365648,10368538,10371262,10374465,10375046,10375373,10381631	0.888889
spleen_male_adult_54_years	chr3	134595263	134595264	134595263	+	RAMPAGE_only	57	62	66	4.442982	5.324849	chr3	134595069	134595442	LTR|ERVL-MaLR|THE1C	+	chr3	134597823	134628104	EPHB1|ENST00000472904.5	+	134597823,134615183,134627939	134597984,134615438,134628104	0.560606
spleen_male_adult_54_years	chr2	113625658	113625681	113625680	-	RAMPAGE_only	6	8	15	1.009769	3.323231	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	1.000000
spleen_male_adult_54_years	chr12	119181285	119181289	119181285	+	RAMPAGE_only	6	6	15	1.009769	3.773557	chr12	119181138	119181588	LTR|ERV1|MER4A1	-	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.800000
spleen_male_adult_54_years	chr11	60327249	60327250	60327249	+	High_confidence	11	11	14	0.942451	3.026987	chr11	60327087	60327483	LTR|ERVL-MaLR|MLT1A1	+	chr11	60327271	60341341	STRG.92437.1	+	60327271,60334881,60337740,60339865,60340775	60327408,60335042,60337947,60339964,60341341	0.928571
spleen_male_adult_54_years	chr1	157274898	157274899	157274898	+	RAMPAGE_only	5	5	7	0.471225	2.807355	chr1	157274375	157275504	LTR|ERV1|HERVFH21-int	-	chr1	157280715	157283068	AL138900.3|ENST00000607010.1	+	157280715,157282577	157280853,157283068	0.714286
spleen_male_adult_54_years	chr2	203533404	203533440	203533429	-	High_confidence	15	16	43	2.894670	4.640813	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.860465
spleen_male_adult_54_years	chr8	143281663	143281687	143281686	-	High_confidence	14	14	32	2.154173	4.601410	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143281069	143281665	MINCR|ENST00000524335.1	-	143281069,143281481	143281384,143281665	0.562500
spleen_male_adult_54_years	chr12	53464773	53464775	53464774	+	RAMPAGE_only	3	5	8	0.538543	2.521641	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.625000
spleen_male_adult_54_years	chr11	123060124	123060229	123060168	-	High_confidence	68	72	270	18.175837	5.239573	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	0.992593
spleen_male_adult_54_years	chr19	17556522	17556550	17556545	+	High_confidence	4	4	16	1.077087	3.640224	chr19	17556574	17556631	SINE|MIR|MIR	+	chr19	17556560	17568577	COLGALT1|ENST00000600474.1	+	17556560,17559310,17560347,17567405,17568508	17556679,17559421,17560465,17567540,17568577	0.750000
spleen_male_adult_54_years	chr6	31587201	31587275	31587201	+	High_confidence	173	176	700	47.122540	5.663126	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.967143
spleen_male_adult_54_years	chr20	48679342	48679382	48679381	-	RAMPAGE_only	7	7	18	1.211722	3.616875	chr20	48679185	48679349	SINE|MIR|MIR	-	chr20	48624251	48827883	PREX1|ENST00000371941.3	-	48624251,48627547,48627860,48629448,48630727,48632276,48632495,48634675,48636462,48637710,48639765,48642167,48642406,48644408,48645850,48649299,48649995,48650893,48651395,48652585,48653360,48655289,48657039,48658135,48659918,48666282,48676192,48679359,48679650,48681234,48688656,48690946,48692671,48700752,48708259,48726289,48734545,48745024,48747808,48827641	48625927,48627615,48627963,48629621,48630794,48632391,48632639,48634775,48636683,48637752,48639894,48642258,48642489,48644497,48646057,48649576,48650206,48651055,48651583,48652706,48653497,48655375,48657188,48658228,48660061,48666355,48676268,48679409,48679754,48681335,48688804,48691096,48692790,48700886,48708421,48726391,48734650,48745147,48747880,48827883	0.777778
spleen_male_adult_54_years	chr20	47412176	47412184	47412176	-	High_confidence	6	6	13	0.875133	3.418296	chr20	47412027	47412149	LTR|ERVL|LTR16E1	-	chr20	47391928	47412327	LINC01754|ENST00000437920.1	-	47391928,47397148,47411267,47412069	47392097,47397345,47411393,47412327	0.692308
spleen_male_adult_54_years	chr3	37058791	37058907	37058906	-	RAMPAGE_only	9	9	33	2.221491	4.163910	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.939394
spleen_male_adult_54_years	chr12	128857599	128857609	128857599	+	RAMPAGE_only	17	17	30	2.019537	4.093069	chr12	128857606	128857812	LTR|Gypsy|MamGypLTR1b	+	chr12	128853602	128984300	GLT1D1|ENST00000413816.6	+	128853602,128875913,128888638,128899235,128914899,128926358,128927104,128947296,128957544,128982928	128853649,128876062,128888744,128899293,128914989,128926454,128927158,128947458,128957643,128984300	0.566667
spleen_male_adult_54_years	chr14	90722777	90722778	90722777	-	RAMPAGE_only	9	9	12	0.807815	3.251629	chr14	90722613	90723298	LINE|L2|L2c	+	chr14	90540587	90689712	TTC7B|ENST00000555005.5	-	90540587,90578105,90593485,90602005,90610741,90617928,90644047,90646950,90652840,90654992,90657173,90658303,90676522,90680471,90689539	90541589,90578308,90593626,90602200,90610839,90618045,90644208,90647023,90652898,90655110,90657278,90658387,90676660,90680535,90689712	0.583333
spleen_male_adult_54_years	chr1	26306932	26306959	26306932	-	High_confidence	4	6	17	1.144405	3.500000	chr1	26306920	26307081	SINE|MIR|MIRb	+	chr1	26294191	26306989	UBXN11|ENST00000450041.5	-	26294191,26296918,26297426,26297961,26301693,26306591,26306855	26294331,26296995,26297481,26298062,26301722,26306704,26306989	0.588235
spleen_male_adult_54_years	chr9	92119699	92119710	92119702	-	High_confidence	6	6	19	1.279040	3.321104	chr9	92118871	92120370	LTR|ERVL-MaLR|MLT1C-int	-	chr9	92119045	92119361	STRG.80718.1	-	92119045	92119361	0.578947
spleen_male_adult_54_years	chr9	20658568	20658608	20658607	+	High_confidence	10	17	35	2.356127	3.732751	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.657143
spleen_male_adult_54_years	chr3	114624940	114625034	114625006	-	High_confidence	34	36	197	13.261629	5.835919	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.751269
stomach_female_adult_51_years	chr9	92536674	92536704	92536674	-	High_confidence	5	6	11	1.021657	2.913977	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.909091
stomach_female_adult_51_years	chr7	100349884	100349885	100349884	+	RAMPAGE_only	5	5	7	0.650145	2.807355	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336078	100351900	STAG3L5P|ENST00000473757.5	+	100336078,100338178,100338772,100345864,100349730,100351251	100336220,100338264,100338889,100345968,100349887,100351900	0.714286
stomach_female_adult_51_years	chr9	125337375	125337392	125337375	+	RAMPAGE_only	2	3	8	0.743023	2.750000	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125302306	125342234	GAPVD1|ENST00000436712.2	+	125302306,125305062,125307412,125307690,125309928,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176,125342218	125302826,125305149,125307547,125307880,125310009,125312612,125321499,125323923,125326589,125330218,125332060,125332629,125337095,125337591,125341264,125342234	0.500000
stomach_female_adult_51_years	chr17	2667195	2667196	2667195	+	High_confidence	8	10	10	0.928779	2.721928	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.900000
stomach_female_adult_51_years	chr15	80059915	80059926	80059918	+	High_confidence	18	18	36	3.343603	4.514718	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.888889
stomach_female_adult_51_years	chr7	6590262	6590286	6590285	+	High_confidence	4	5	17	1.578924	2.952820	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.941176
stomach_female_adult_51_years	chr17	2975660	2975661	2975660	+	RAMPAGE_only	7	7	9	0.835901	2.725481	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.888889
stomach_female_adult_51_years	chr17	42403521	42403860	42403661	-	RAMPAGE_only	12	12	120	11.145345	6.106175	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	0.991667
stomach_female_adult_51_years	chr19	49086488	49086559	49086520	+	High_confidence	35	37	121	11.238223	5.189825	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.958678
stomach_female_adult_51_years	chr3	155664978	155664981	155664980	-	RAMPAGE_only	4	6	8	0.743023	2.500000	chr3	155664915	155665290	LTR|ERVL-MaLR|MLT1J2	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	1.000000
stomach_female_adult_51_years	chr5	134613031	134613097	134613096	-	High_confidence	9	9	54	5.015405	4.787023	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.962963
stomach_female_adult_51_years	chr4	158173024	158173025	158173024	-	High_confidence	53	57	76	7.058718	5.432643	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.894737
stomach_female_adult_51_years	chr1	239684601	239684670	239684669	+	High_confidence	7	7	49	4.551016	4.596840	chr1	239684411	239684669	SINE|Alu|AluSx1	+	chr1	239684394	239684883	STRG.8275.1	+	239684394	239684883	0.673469
stomach_female_adult_51_years	chr11	93499283	93499310	93499303	-	High_confidence	6	6	25	2.321947	3.729446	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	0.920000
stomach_female_adult_51_years	chr6	2990736	2990750	2990748	-	RAMPAGE_only	4	7	14	1.300290	2.777363	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.928571
stomach_female_adult_51_years	chr1	155478111	155478112	155478111	-	RAMPAGE_only	7	7	9	0.835901	2.947703	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.777778
stomach_female_adult_51_years	chr10	93431428	93431429	93431428	-	RAMPAGE_only	4	5	6	0.557267	2.584963	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	1.000000
stomach_female_adult_51_years	chr1	33021416	33021456	33021454	-	RAMPAGE_only	13	20	45	4.179504	4.546757	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	1.000000
stomach_female_adult_51_years	chrX	2917810	2917854	2917810	-	RAMPAGE_only	3	4	10	0.928779	3.121928	chrX	2917473	2917770	SINE|Alu|AluJo	-	chrX	2906898	2910836	STRG.86339.1	-	2906898,2908720,2909816,2910658	2907632,2908842,2909979,2910836	1.000000
stomach_female_adult_51_years	chr21	29077437	29077454	29077437	+	High_confidence	2	2	8	0.743023	2.521641	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077470	29109791	MAP3K7CL|NM_001286623.1	+	29077470,29080551,29085812,29091500,29091667,29092438,29109039	29077713,29080708,29085917,29091576,29091761,29092581,29109791	0.875000
stomach_female_adult_51_years	chr7	80524846	80524847	80524846	+	RAMPAGE_only	9	9	13	1.207412	2.918296	chr7	80524761	80524908	LTR|ERV1|LTR38B	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.538462
stomach_female_adult_51_years	chr19	47751039	47751103	47751102	+	High_confidence	7	11	27	2.507703	3.865999	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47750177	47757005	NOP53|ENST00000595143.5	+	47750177,47750907,47751519,47752511,47754526,47754708,47755783,47756527,47756687,47756998	47750286,47751107,47751590,47752607,47754631,47754757,47755822,47756604,47756744,47757005	0.814815
stomach_female_adult_51_years	chr14	81192669	81192702	81192675	-	RAMPAGE_only	4	4	21	1.950435	3.300559	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.904762
stomach_female_adult_51_years	chrX	48683361	48683362	48683361	+	High_confidence	8	12	12	1.114534	3.095795	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.916667
stomach_female_adult_51_years	chr11	105842371	105842400	105842371	+	High_confidence	7	7	19	1.764680	3.905765	chr11	105842025	105842553	LINE|L2|L2a	-	chr11	105842782	105903983	GRIA4|ENST00000527687.1	+	105842782,105862023,105887518,105898268,105903813	105842912,105862208,105887572,105898427,105903983	0.684211
stomach_female_adult_51_years	chr22	49925453	49925454	49925453	+	RAMPAGE_only	7	9	10	0.928779	2.725481	chr22	49925493	49925572	LINE|CR1|L3b	+	chr22	49923209	49927528	CRELD2|ENST00000487969.1	+	49923209,49927254	49925557,49927528	0.900000
stomach_female_adult_51_years	chr12	7502483	7502530	7502519	-	High_confidence	3	5	16	1.486046	3.589898	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.937500
stomach_female_adult_51_years	chr11	8776387	8776435	8776425	-	High_confidence	21	21	61	5.665550	4.740518	chr11	8776369	8776474	LINE|L2|L2b	-	chr11	8730980	8776679	ST5|ENST00000533016.1	-	8730980,8750620,8776191	8731209,8750725,8776679	0.950820
stomach_female_adult_51_years	chr2	227534916	227534933	227534932	+	RAMPAGE_only	3	3	7	0.650145	2.584963	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.714286
stomach_female_adult_51_years	chr8	53523878	53523902	53523878	-	High_confidence	3	3	11	1.021657	2.913977	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.909091
stomach_female_adult_51_years	chr7	11193359	11193360	11193359	+	High_confidence	4	4	7	0.650145	2.584963	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.857143
stomach_female_adult_51_years	chr19	58312204	58312243	58312242	+	RAMPAGE_only	4	4	10	0.928779	2.947703	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.800000
stomach_female_adult_51_years	chr5	126600248	126600249	126600248	+	High_confidence	10	11	11	1.021657	2.921928	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	0.909091
stomach_female_adult_51_years	chr8	116648828	116648893	116648847	-	RAMPAGE_only	8	10	34	3.157848	4.536670	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.970588
stomach_female_adult_51_years	chr20	3795750	3795789	3795750	+	High_confidence	16	16	86	7.987497	5.614934	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.988372
stomach_female_adult_51_years	chr5	151687233	151687251	151687250	-	High_confidence	7	9	16	1.486046	3.625000	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
stomach_female_adult_51_years	chr9	112471425	112471471	112471425	+	RAMPAGE_only	6	8	16	1.486046	2.682589	chr9	112471252	112471587	LTR|ERVL-MaLR|MLT1B	+	chr9	112441713	112471670	STRG.45362.1	+	112441713,112454012,112459448,112470431	112441770,112454162,112459577,112471670	0.750000
stomach_female_adult_51_years	chr8	11864410	11864440	11864410	-	RAMPAGE_only	1	1	7	0.650145	2.584963	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.857143
stomach_female_adult_51_years	chr3	129559620	129559621	129559620	-	High_confidence	6	6	6	0.557267	2.584963	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	1.000000
stomach_female_adult_51_years	chr4	5813692	5813723	5813692	+	RAMPAGE_only	3	3	10	0.928779	2.947703	chr4	5813642	5813697	LINE|CR1|L3	+	chr4	5711196	5814305	EVC|ENST00000264956.10	+	5711196,5719247,5729306,5731424,5733350,5741715,5745203,5748147,5752835,5753784,5756263,5783551,5793607,5797021,5798585,5801949,5804729,5808200,5809517,5810338,5810952	5711554,5719373,5729390,5731657,5733435,5741814,5745341,5748306,5753052,5753933,5756362,5783764,5793717,5797232,5798792,5802094,5804841,5808327,5809611,5810450,5814305	0.800000
stomach_female_adult_51_years	chr19	55677172	55677175	55677173	+	High_confidence	6	12	17	1.578924	3.202820	chr19	55677165	55677362	SINE|MIR|MIR	+	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.764706
stomach_female_adult_51_years	chr14	102947726	102947738	102947726	-	RAMPAGE_only	5	5	12	1.114534	2.663533	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102944042	102968532	CDC42BPB|ENST00000559043.1	-	102944042,102945661,102946467,102947720,102949764,102950465,102952497,102954601,102959630,102963060,102964501,102966281,102967045,102968252,102968471	102944487,102945724,102946684,102947802,102949904,102950602,102952603,102954688,102959710,102963155,102964650,102966387,102967170,102968358,102968532	0.666667
stomach_female_adult_51_years	chr5	150125450	150125461	150125450	-	RAMPAGE_only	7	8	13	1.207412	3.084963	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.692308
stomach_female_adult_51_years	chr7	134527711	134527772	134527711	+	High_confidence	4	5	35	3.250726	4.359378	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527619	134537087	AKR1B10|ENST00000475559.1	+	134527619,134530642,134531907,134533003,134535616,134536708,134537050	134527977,134530810,134532024,134533081,134535663,134536772,134537087	0.942857
stomach_female_adult_51_years	chr13	101583340	101583351	101583350	+	RAMPAGE_only	3	5	9	0.835901	2.500000	chr13	101583386	101583681	LINE|L1|L1MA1	+	chr13	101598144	101718344	ITGBL1|ENST00000490242.2	+	101598144,101692584,101706755,101714437,101715562,101717498	101598299,101692701,101706902,101714551,101715670,101718344	0.888889
stomach_female_adult_51_years	chr16	87950477	87950488	87950487	+	High_confidence	6	6	15	1.393168	2.807355	chr16	87950440	87950735	SINE|Alu|AluSx1	-	chr16	87950435	87981049	BANP|ENST00000423252.5	+	87950435,87975047,87981035	87950927,87975185,87981049	0.866667
stomach_female_adult_51_years	chr19	51350348	51350373	51350355	-	RAMPAGE_only	3	5	13	1.207412	2.751629	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.923077
stomach_female_adult_51_years	chr12	10553362	10553365	10553364	+	High_confidence	6	10	12	1.114534	3.084963	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.916667
stomach_female_adult_51_years	chr17	47067498	47067518	47067498	-	High_confidence	79	81	300	27.863362	5.734527	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.956667
stomach_female_adult_51_years	chr11	62600249	62600258	62600249	-	High_confidence	6	6	12	1.114534	3.251629	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.916667
stomach_female_adult_51_years	chr1	242001562	242001589	242001562	-	RAMPAGE_only	9	9	25	2.321947	3.969002	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	241999083	MAP1LC3C|NM_001004343.2	-	241995489,241998513,241998775,241998950	241996385,241998620,241998831,241999083	0.800000
stomach_female_adult_51_years	chr9	121313981	121314021	121314002	+	RAMPAGE_only	88	90	237	22.012056	5.481546	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
stomach_female_adult_51_years	chr4	170226587	170226588	170226587	+	High_confidence	7	7	9	0.835901	2.947703	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.777778
stomach_female_adult_51_years	chr16	20676161	20676162	20676161	-	High_confidence	5	5	8	0.743023	2.521641	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.750000
stomach_female_adult_51_years	chr17	4143196	4143200	4143199	+	High_confidence	50	52	102	9.473543	5.106950	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.960784
stomach_female_adult_51_years	chr11	72758550	72758582	72758550	-	High_confidence	12	12	41	3.807993	4.662815	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754862	72757939	STARD10|ENST00000543089.1	-	72754862,72755700,72757766	72755142,72755753,72757939	0.536585
stomach_female_adult_51_years	chr11	59840987	59841023	59841022	-	High_confidence	9	10	21	1.950435	4.106603	chr11	59840939	59841100	SINE|MIR|MIR1_Amn	-	chr11	59835787	59841321	GIF|ENST00000533847.1	-	59835787,59837173,59840976	59836009,59837351,59841321	0.952381
stomach_female_adult_51_years	chr16	15798664	15798684	15798664	-	RAMPAGE_only	13	16	44	4.086626	4.433990	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.931818
stomach_female_adult_51_years	chr1	153967486	153967512	153967486	+	High_confidence	6	6	22	2.043313	2.889917	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.863636
stomach_female_adult_51_years	chr16	75248150	75248151	75248150	-	High_confidence	7	7	7	0.650145	2.807355	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.571429
stomach_female_adult_51_years	chr11	123060124	123060253	123060168	-	High_confidence	26	27	195	18.111185	5.360578	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	1.000000
stomach_female_adult_51_years	chr1	202551787	202551798	202551787	+	RAMPAGE_only	3	3	14	1.300290	3.180833	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.500000
stomach_female_adult_51_years	chr15	94099309	94099373	94099349	-	RAMPAGE_only	4	5	23	2.136191	4.186704	chr15	94099050	94099714	LINE|L1|L1M4a2	+	chr15	94064368	94070820	LINC01579|ENST00000555772.1	-	94064368,94066768,94070523	94065292,94066879,94070820	0.869565
stomach_female_adult_51_years	chr3	28347646	28347659	28347646	-	High_confidence	5	5	10	0.928779	2.725481	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.600000
stomach_female_adult_51_years	chr8	11795578	11795579	11795578	+	High_confidence	30	30	31	2.879214	3.714409	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.967742
stomach_female_adult_51_years	chr1	239730464	239730465	239730464	-	High_confidence	35	36	46	4.272382	4.641527	chr1	239730338	239730702	LINE|L2|L2c	-	chr1	239707342	239730465	CHRM3-AS2|ENST00000628573.2	-	239707342,239714176,239720138,239727653,239730400	239707760,239714264,239720178,239727808,239730465	0.739130
stomach_female_adult_51_years	chr17	59620043	59620134	59620099	+	High_confidence	5	7	39	3.622237	4.452697	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.846154
stomach_female_adult_51_years	chr9	73160313	73160373	73160372	+	High_confidence	11	11	50	4.643894	4.267278	chr9	73160421	73160511	SINE|MIR|MIR	+	chr9	73160284	73165544	ANXA1|ENST00000489109.1	+	73160284,73160802,73162781,73163475,73165115	73160376,73160893,73162861,73163532,73165544	0.940000
stomach_female_adult_51_years	chr20	50130092	50130102	50130092	-	RAMPAGE_only	4	4	11	1.021657	2.646439	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.909091
stomach_female_adult_51_years	chr17	59619894	59619923	59619894	+	High_confidence	441	485	1233	114.518418	5.477710	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619902	59620132	STRG.75097.1	+	59619902	59620132	0.716139
stomach_female_adult_51_years	chr3	52615423	52615447	52615423	-	High_confidence	3	3	9	0.835901	3.169925	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	1.000000
stomach_female_adult_51_years	chr3	134485415	134485471	134485462	-	High_confidence	7	7	30	2.786336	4.423252	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.500000
stomach_female_adult_51_years	chr1	88887263	88887291	88887263	-	RAMPAGE_only	3	3	10	0.928779	2.725481	chr1	88886926	88887218	SINE|Alu|AluSx1	-	chr1	88853223	88891496	GTF2B|ENST00000448623.5	-	88853223,88857372,88859881,88860139,88863980,88887260,88891482	88853346,88857487,88860011,88860286,88864114,88887367,88891496	0.900000
stomach_female_adult_51_years	chr12	2798775	2798822	2798821	+	High_confidence	4	4	18	1.671802	3.149673	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	1.000000
stomach_female_adult_51_years	chr16	2205845	2205853	2205845	+	High_confidence	2	2	7	0.650145	2.521641	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	1.000000
stomach_female_adult_51_years	chr17	40648571	40648614	40648613	-	High_confidence	2	2	7	0.650145	2.521641	chr17	40648546	40648925	LINE|L2|L2b	+	chr17	40625002	40648654	SMARCE1|ENST00000643318.1	-	40625002,40630713,40631591,40632194,40635930,40636394,40637491,40645795,40647772	40628993,40630924,40631693,40632367,40636102,40636526,40637572,40645847,40648654	1.000000
stomach_female_adult_51_years	chr12	123390725	123390774	123390725	+	High_confidence	10	10	20	1.857557	3.681881	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123390536	123409321	STRG.59551.4	+	123390536,123395046,123396344,123403572,123404883,123407492	123390786,123395266,123396432,123403632,123405074,123409321	0.950000
stomach_female_adult_51_years	chr19	38101165	38101166	38101165	+	RAMPAGE_only	4	4	6	0.557267	2.584963	chr19	38101212	38101377	LINE|L1|L1M5	+	chr19	38099981	38110315	SIPA1L3|ENST00000595384.1	+	38099981,38101051,38106288,38110226	38100150,38101226,38106640,38110315	0.500000
stomach_female_adult_51_years	chr7	87040212	87040215	87040214	-	RAMPAGE_only	4	7	8	0.743023	2.521641	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.500000
stomach_female_adult_51_years	chr14	77736987	77737051	77736987	-	High_confidence	3	3	17	1.578924	3.280639	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.882353
stomach_female_adult_51_years	chr19	3062920	3062925	3062922	-	High_confidence	5	8	14	1.300290	3.093069	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	1.000000
stomach_female_adult_51_years	chr16	53445775	53445781	53445775	+	High_confidence	2	3	8	0.743023	2.500000	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	1.000000
stomach_female_adult_51_years	chr6	36505073	36505091	36505090	-	RAMPAGE_only	10	11	23	2.136191	4.186704	chr6	36505057	36505226	DNA|hAT-Charlie|MER5B	+	chr6	36494694	36507532	STRG.30974.1	-	36494694,36496710,36497779,36498362,36499872,36506582,36507499	36495914,36496805,36497875,36498486,36499990,36506644,36507532	0.869565
stomach_female_adult_51_years	chr6	79631425	79631442	79631425	+	High_confidence	3	3	12	1.114534	3.277613	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.916667
stomach_female_adult_51_years	chr5	66690212	66690251	66690222	+	RAMPAGE_only	6	6	21	1.950435	3.446439	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66596379	66986523	MAST4|ENST00000406374.5	+	66596379,66759708,66788669,66899950,66916982,66986443	66597018,66759862,66788794,66899982,66917018,66986523	0.523810
stomach_female_adult_51_years	chr5	180830987	180831010	180831009	+	High_confidence	3	3	11	1.021657	2.921928	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.818182
stomach_female_adult_51_years	chr15	93863033	93863066	93863065	+	High_confidence	13	13	22	2.043313	3.684184	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.772727
stomach_female_adult_51_years	chr17	28234014	28234048	28234030	-	High_confidence	11	12	68	6.315695	5.442253	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232806	28233964	STRG.73198.1	-	28232806,28233917	28233342,28233964	0.720588
stomach_female_adult_51_years	chr2	86482577	86482578	86482577	+	High_confidence	15	15	19	1.764680	4.037401	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86482556	86489632	STRG.10976.1	+	86482556,86483986,86484941,86485728,86489317,86489519	86482694,86484158,86485029,86485859,86489437,86489632	0.947368
stomach_female_adult_51_years	chr2	113184962	113184998	113184962	+	High_confidence	4	4	19	1.764680	3.576618	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.842105
stomach_female_adult_51_years	chr19	51027667	51027674	51027667	-	High_confidence	6	6	13	1.207412	2.855389	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.769231
stomach_female_adult_51_years	chr2	188606037	188606038	188606037	-	RAMPAGE_only	9	9	9	0.835901	2.725481	chr2	188605610	188606957	LTR|ERV1|LTR12C	-	chr2	188598790	188839445	AC092598.1|ENST00000431708.1	-	188598790,188599299,188600544,188603659,188647203,188656383,188746423,188839285	188598857,188599401,188600609,188603757,188647277,188656556,188746481,188839445	0.777778
stomach_female_adult_51_years	chr7	102822447	102822459	102822458	-	RAMPAGE_only	4	6	13	1.207412	3.084963	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.615385
stomach_female_adult_51_years	chr13	50185874	50185885	50185874	+	High_confidence	2	3	8	0.743023	2.750000	chr13	50180295	50186330	LINE|L1|L1PA2	-	chr13	50185879	50528064	DLEU1|ENST00000485007.5	+	50185879,50390197,50415088,50433412,50527865	50186070,50390291,50415202,50433550,50528064	0.500000
stomach_female_adult_51_years	chr3	156540569	156540575	156540569	-	High_confidence	28	29	83	7.708864	2.947384	chr3	156540323	156540630	SINE|Alu|AluY	+	chr3	156540159	156540559	STRG.19676.1	-	156540159	156540559	0.987952
stomach_female_adult_51_years	chr1	32768074	32768097	32768074	+	RAMPAGE_only	7	7	14	1.300290	3.238901	chr1	32768079	32768253	SINE|MIR|MIR3	+	chr1	32765666	32774970	KIAA1522|ENST00000373480.1	+	32765666,32767786,32768061,32768651,32769672,32769879,32772864	32765827,32767957,32768117,32768775,32769786,32772441,32774970	0.857143
stomach_female_adult_51_years	chr11	77175226	77175267	77175226	+	High_confidence	7	7	15	1.393168	3.182006	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.933333
stomach_female_adult_51_years	chr3	33838256	33838289	33838256	+	RAMPAGE_only	6	6	18	1.671802	3.281036	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33841852	33854006	STRG.16192.2	+	33841852,33844111,33845418,33852487,33853878	33842074,33844223,33845588,33852736,33854006	1.000000
stomach_female_adult_51_years	chr17	49646471	49646499	49646498	-	High_confidence	12	12	61	5.665550	4.266830	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.819672
stomach_female_adult_51_years	chr10	75771460	75771492	75771491	+	RAMPAGE_only	3	4	9	0.835901	2.500000	chr10	75771358	75771666	LINE|L2|L2a	-	chr10	75782760	76557375	C10orf11|NM_032024.4	+	75782760,76036007,76047163,76058665,76324400,76557208	75783022,76036134,76047303,76058783,76324485,76557375	0.666667
stomach_female_adult_51_years	chr17	59729702	59729729	59729702	+	High_confidence	5	5	14	1.300290	3.238901	chr17	59729673	59729983	SINE|Alu|AluSq2	-	chr17	59729714	59737517	VMP1|ENST00000587259.5	+	59729714,59731420,59735337,59737452	59730017,59731522,59735473,59737517	0.928571
stomach_female_adult_51_years	chr6	46489117	46489150	46489117	-	RAMPAGE_only	2	2	14	1.300290	3.378783	chr6	46489069	46489441	LINE|L2|L2c	+	chr6	46220729	46491323	RCAN2|NM_001251974.1	-	46220729,46246747,46248722,46456751,46491172	46223301,46246919,46248896,46456978,46491323	0.928571
stomach_female_adult_51_years	chr1	16951007	16951023	16951022	+	RAMPAGE_only	4	4	11	1.021657	2.921928	chr1	16950976	16951061	DNA|hAT-Ac|OldhAT1	+	chr1	16953156	16954781	CROCC|ENST00000497654.2	+	16953156,16954222,16954733	16953481,16954357,16954781	0.727273
stomach_female_adult_51_years	chr20	45833293	45833313	45833293	-	High_confidence	5	5	27	2.507703	3.902175	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.962963
stomach_female_adult_51_years	chr10	88667589	88667676	88667634	+	RAMPAGE_only	4061	4593	17973	1669.294027	5.863071	chr10	88667660	88667752	DNA|hAT-Ac|OldhAT1	+	chr10	88664457	88678814	LIPF|ENST00000355843.2	+	88664457,88665478,88667286,88667568,88668656,88669836,88671828,88673587,88675585,88676208,88678444	88664491,88665559,88667402,88667686,88668756,88669946,88671965,88673734,88675657,88676280,88678814	0.971791
stomach_female_adult_51_years	chr9	73080369	73080370	73080369	-	High_confidence	8	8	8	0.743023	2.500000	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	1.000000
stomach_female_adult_51_years	chr2	179043807	179043808	179043807	-	RAMPAGE_only	14	14	16	1.486046	3.625000	chr2	179042647	179044414	LINE|L1|L1PA10	+	chr2	178829756	179050059	CCDC141|NM_173648.3	-	178829756,178836893,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900,178886751,178888526,178905328,178918712,178944534,178961229,178975056,178978483,179047283,179049839	178834440,178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178885092,178886871,178888668,178905501,178918907,178944651,178961483,178975165,178978675,179047406,179050059	0.937500
stomach_female_adult_51_years	chr14	21360441	21360466	21360441	-	High_confidence	3	3	11	1.021657	2.846439	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21357214	21360516	STRG.62034.1	-	21357214,21357926,21358314,21359483,21360414	21357366,21358002,21358427,21359609,21360516	0.909091
stomach_female_adult_51_years	chr8	144106357	144106394	144106357	+	High_confidence	4	4	17	1.578924	3.750000	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.764706
stomach_female_adult_51_years	chr20	35713368	35713424	35713423	-	High_confidence	5	5	21	1.950435	3.463281	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.904762
stomach_female_adult_51_years	chr18	7946875	7946888	7946887	+	High_confidence	7	7	20	1.857557	3.642150	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.850000
stomach_female_adult_51_years	chr19	9140393	9140422	9140393	+	High_confidence	19	19	43	3.993749	4.639707	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.790698
stomach_female_adult_51_years	chr15	75626304	75626305	75626304	-	High_confidence	4	4	6	0.557267	2.584963	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.833333
stomach_female_adult_51_years	chr2	201790489	201790507	201790506	+	High_confidence	8	8	27	2.507703	4.286790	chr2	201790433	201790802	LINE|L2|L2-3_Crp	-	chr2	201790460	201876583	CDK15|ENST00000451080.5	+	201790460,201800783,201806428,201807493,201807852,201812482,201822808,201823664,201833847,201835642,201847380,201854873,201872277,201876523	201790660,201800901,201806547,201807643,201807952,201812562,201822903,201823727,201833971,201835763,201847474,201854937,201872326,201876583	0.555556
stomach_female_adult_51_years	chr1	116390216	116390290	116390289	+	RAMPAGE_only	5	5	27	2.507703	4.133661	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.925926
stomach_female_adult_51_years	chr20	18794065	18794086	18794085	+	High_confidence	12	12	37	3.436481	4.056182	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
stomach_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	317	348	549	50.989953	5.571410	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.981785
stomach_female_adult_51_years	chr6	79631273	79631329	79631302	+	High_confidence	44	44	184	17.089529	6.068092	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.989130
stomach_female_adult_51_years	chr10	102449836	102449839	102449836	+	High_confidence	9	9	21	1.950435	4.021928	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.714286
stomach_female_adult_51_years	chr1	182390098	182390141	182390098	-	High_confidence	2	2	10	0.928779	3.169925	chr1	182389985	182390241	SINE|Alu|AluSx	+	chr1	182382893	182390304	GLUL|ENST00000491322.1	-	182382893,182388571	182387292,182390304	0.900000
stomach_female_adult_51_years	chr21	36005313	36005320	36005313	+	High_confidence	7	8	15	1.393168	3.640224	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.933333
stomach_female_adult_51_years	chr9	129698722	129698738	129698737	+	RAMPAGE_only	7	7	14	1.300290	3.392747	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	0.928571
stomach_female_adult_51_years	chrX	5726311	5726325	5726324	-	High_confidence	13	14	21	1.950435	3.431624	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.857143
stomach_female_adult_51_years	chr19	20423697	20423704	20423697	-	RAMPAGE_only	6	8	23	2.136191	4.055958	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.565217
stomach_female_adult_51_years	chr12	643625	643636	643635	-	High_confidence	4	4	11	1.021657	3.121928	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.545455
stomach_female_adult_51_years	chr2	200889293	200889318	200889293	-	High_confidence	8	8	24	2.229069	4.349649	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.625000
stomach_female_adult_51_years	chr20	9333276	9333284	9333276	+	High_confidence	3	4	8	0.743023	2.500000	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9333305	9338998	STRG.81763.3	+	9333305,9337125,9338007,9338893	9333570,9337206,9338067,9338998	1.000000
stomach_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	49	49	49	4.551016	4.629717	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.897959
stomach_female_adult_51_years	chr19	3062977	3062983	3062982	-	High_confidence	5	5	14	1.300290	3.546594	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.928571
stomach_female_adult_51_years	chr9	127944637	127944679	127944637	-	RAMPAGE_only	5	5	19	1.764680	3.576618	chr9	127944423	127944587	SINE|MIR|MIRb	-	chr9	127940880	127948159	FAM102A|ENST00000465821.5	-	127940880,127944776,127945366,127945648,127948070	127944684,127944898,127945562,127945753,127948159	1.000000
stomach_female_adult_51_years	chr13	59708596	59708640	59708596	-	RAMPAGE_only	12	12	41	3.807993	5.016089	chr13	59708300	59708705	LINE|L2|L2-3_Crp	+	chr13	59665691	59751021	DIAPH3|ENST00000649952.1	-	59665691,59750838	59666846,59751021	0.560976
stomach_female_adult_51_years	chr14	81170402	81170423	81170402	-	High_confidence	7	7	20	1.857557	3.646439	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.950000
stomach_female_adult_51_years	chr10	94683483	94683515	94683483	+	High_confidence	4	4	15	1.393168	3.589898	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_001128925.1	+	94683493,94687769,94688124,94694916,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94720537,94724533,94733438,94736190	1.000000
stomach_female_adult_51_years	chr20	50131101	50131162	50131139	-	High_confidence	15	15	41	3.807993	4.548097	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.902439
stomach_female_adult_51_years	chr19	58306086	58306162	58306133	+	High_confidence	3	3	16	1.486046	3.373557	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.750000
stomach_female_adult_51_years	chr1	155679929	155679930	155679929	-	High_confidence	13	14	14	1.300290	3.026987	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	0.928571
stomach_female_adult_51_years	chr7	101217578	101217595	101217578	-	High_confidence	3	4	9	0.835901	2.947703	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
stomach_female_adult_51_years	chr1	1721622	1721637	1721636	-	RAMPAGE_only	7	7	14	1.300290	3.521641	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702729	1722831	CDK11A|ENST00000356200.7	-	1702729,1703079,1703475,1703823,1704038,1704222,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719327,1721595,1722587	1702999,1703269,1703624,1703940,1704146,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712400,1716478,1719455,1721711,1722831	0.857143
stomach_female_adult_51_years	chr1	21841544	21841570	21841544	-	RAMPAGE_only	3	4	10	0.928779	2.947703	chr1	21841366	21841498	SINE|MIR|MIRb	-	chr1	21822231	21937297	HSPG2|NM_005529.6	-	21822231,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174,21937154	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896310,21937297	0.900000
stomach_female_adult_51_years	chr9	72363564	72363574	72363573	-	High_confidence	6	6	10	0.928779	3.169925	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.600000
stomach_female_adult_51_years	chr10	110881140	110881172	110881140	+	High_confidence	2	2	7	0.650145	2.521641	chr10	110881075	110881155	DNA|TcMar-Mariner|MADE2	+	chr10	110880318	110887798	PDCD4|ENST00000492932.5	+	110880318,110881232,110883002,110885252,110887664	110880485,110881535,110883097,110885366,110887798	1.000000
stomach_female_adult_51_years	chr1	19344359	19344389	19344388	-	RAMPAGE_only	13	13	33	3.064970	4.513795	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
stomach_female_adult_51_years	chr19	55676626	55676654	55676653	+	High_confidence	2	2	6	0.557267	2.584963	chr19	55676523	55676713	SINE|MIR|MIRb	-	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.833333
stomach_female_adult_51_years	chrX	53585017	53585113	53585017	-	High_confidence	8	9	42	3.900871	4.823864	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53576967	53584338	STRG.87193.1	-	53576967,53580830,53583557,53584185	53577067,53581026,53583916,53584338	0.904762
stomach_female_adult_51_years	chr14	32402135	32402136	32402135	+	RAMPAGE_only	27	27	27	2.507703	3.482127	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32433163	32439032	AKAP6|ENST00000554449.1	+	32433163,32438673	32433817,32439032	0.888889
stomach_female_adult_51_years	chr2	227164620	227164621	227164620	+	High_confidence	8	8	9	0.835901	3.000000	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.888889
stomach_female_adult_51_years	chr5	128082249	128082276	128082275	-	High_confidence	7	10	23	2.136191	4.061482	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	128024026	128082960	LINC01184|ENST00000508878.5	-	128024026,128061143,128076946,128081972,128082734	128024298,128061244,128077093,128082194,128082960	0.608696
stomach_female_adult_51_years	chr10	132848642	132848701	132848642	+	High_confidence	8	9	52	4.829649	4.946552	chr10	132848295	132848877	LTR|ERV1|MER61F	+	chr10	132848750	132849053	STRG.51085.1	+	132848750	132849053	0.923077
stomach_female_adult_51_years	chr1	21227165	21227193	21227185	-	RAMPAGE_only	3	3	9	0.835901	2.750000	chr1	21227023	21227146	SINE|Alu|AluJr4	-	chr1	21218583	21279549	ECE1|ENST00000357071.8	-	21218583,21221746,21225249,21227158,21227930,21233557,21235849,21236745,21238133,21244988,21247220,21255946,21257524,21258692,21260270,21272698,21279190	21220131,21221842,21225440,21227226,21228041,21233661,21235927,21236844,21238244,21245103,21247363,21256138,21257590,21258839,21260392,21272911,21279549	0.888889
stomach_female_adult_51_years	chr2	229232042	229232054	229232053	-	High_confidence	82	82	160	14.860460	6.477455	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.856250
stomach_female_adult_51_years	chr17	42403958	42404011	42403958	-	RAMPAGE_only	5	5	24	2.229069	3.740953	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	0.958333
stomach_female_adult_51_years	chr1	77129077	77129078	77129077	+	High_confidence	206	237	238	22.104934	5.919400	chr1	77128993	77129084	DNA|hAT-Charlie|MER58B	+	chr1	77129113	77129668	AC113935.1|ENST00000471722.1	+	77129113	77129668	0.878151
stomach_female_adult_51_years	chr14	102235448	102235462	102235458	-	High_confidence	8	8	19	1.764680	3.392147	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.947368
stomach_female_adult_51_years	chr2	86482613	86482619	86482613	+	High_confidence	3	3	9	0.835901	2.500000	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86482556	86489632	STRG.10976.1	+	86482556,86483986,86484941,86485728,86489317,86489519	86482694,86484158,86485029,86485859,86489437,86489632	0.777778
stomach_female_adult_51_years	chr19	3667321	3667349	3667348	-	RAMPAGE_only	4	4	9	0.835901	2.947703	chr19	3667202	3667314	SINE|MIR|MIR3	-	chr19	3636600	3700390	PIP5K1C|ENST00000537021.1	-	3636600,3638883,3641704,3642906,3643242,3644086,3645973,3647337,3648624,3651825,3653289,3656404,3660965,3661870,3664821,3667321,3700296	3638006,3639016,3641809,3642939,3643381,3644251,3646058,3647386,3648708,3652031,3653589,3656557,3661083,3662001,3664914,3667353,3700390	1.000000
stomach_female_adult_51_years	chr19	7642297	7642314	7642297	+	High_confidence	1	1	7	0.650145	2.584963	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7647493	STRG.78806.2	+	7642245,7642428,7642765,7642982,7643164,7644613,7645196,7646248,7647161	7642333,7642536,7642823,7643048,7643245,7644752,7645306,7646344,7647493	0.857143
stomach_female_adult_51_years	chr9	113375494	113375507	113375494	-	High_confidence	2	3	9	0.835901	2.500000	chr9	113375358	113375529	SINE|MIR|MIR3	-	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	0.888889
stomach_female_adult_51_years	chr12	9965320	9965321	9965320	+	RAMPAGE_only	11	11	16	1.486046	3.323231	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.750000
stomach_female_adult_51_years	chr17	19739525	19739549	19739525	-	High_confidence	4	4	11	1.021657	2.846439	chr17	19739343	19739476	SINE|MIR|MIRb	-	chr17	19738167	19739508	STRG.73061.1	-	19738167,19738322,19738995,19739507	19738235,19738453,19739095,19739508	0.818182
stomach_female_adult_51_years	chr3	29280853	29280866	29280853	-	High_confidence	2	2	6	0.557267	2.584963	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.833333
stomach_female_adult_51_years	chr12	12635904	12635914	12635913	+	RAMPAGE_only	3	3	7	0.650145	2.521641	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	1.000000
stomach_female_adult_51_years	chr1	220032391	220032432	220032391	-	RAMPAGE_only	2	2	8	0.743023	2.750000	chr1	220032081	220032353	SINE|Alu|AluY	-	chr1	220022443	220030476	STRG.7645.1	-	220022443,220024263,220025131,220030385	220022518,220024456,220025258,220030476	1.000000
stomach_female_adult_51_years	chr16	27333283	27333288	27333283	+	RAMPAGE_only	9	12	22	2.043313	4.061482	chr16	27333168	27333399	LINE|CR1|L3	-	chr16	27341288	27364777	IL4R|ENST00000170630.6	+	27341288,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27364777	0.590909
stomach_female_adult_51_years	chr7	107580245	107580267	107580245	+	High_confidence	191	192	929	86.283545	6.788543	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.949408
stomach_female_adult_51_years	chr4	102431241	102431248	102431244	-	High_confidence	4	4	14	1.300290	3.238901	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.857143
stomach_female_adult_51_years	chr5	169776770	169776771	169776770	+	RAMPAGE_only	10	10	12	1.114534	2.855389	chr5	169776604	169776958	LTR|ERVL-MaLR|THE1D	+	chr5	169703948	170083379	DOCK2|ENST00000523351.6	+	169703948,169708168,169711934,169714027,169714359,169716212,169717383,169718656,169747395,169759704,169761518,169803057,169840756,169983067,169985827,169996085,170008496,170008687,170018959,170027862,170034398,170036514,170041054,170042012,170045815,170047509,170050255,170055304,170056683,170057579,170067509,170069136,170075946,170077709,170078974,170080162,170081841,170082795	169704075,169708267,169712007,169714211,169714457,169716302,169717484,169718791,169747504,169759775,169761625,169803206,169840852,169983166,169985922,169996164,170008597,170008746,170019108,170027948,170034555,170036555,170041145,170042132,170045905,170047614,170050397,170055386,170056768,170057666,170067686,170069220,170076084,170077837,170079146,170080283,170081984,170083379	0.583333
stomach_female_adult_51_years	chr5	109383459	109383498	109383459	-	High_confidence	6	6	19	1.764680	3.787144	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
stomach_female_adult_51_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	46	47	47	4.365260	3.819637	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.978723
stomach_female_adult_51_years	chr11	63479003	63479004	63479003	-	RAMPAGE_only	9	9	9	0.835901	2.947703	chr11	63478801	63478955	SINE|MIR|MIR3	-	chr11	62533983	62556235	AHNAK|ENST00000530285.5	-	62533983,62535002,62535944,62536468,62556187	62534074,62535190,62536098,62536567,62556235	0.888889
stomach_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	120	120	120	11.145345	4.580456	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.958333
stomach_female_adult_51_years	chr6	130894344	130894364	130894363	-	High_confidence	3	3	6	0.557267	2.584963	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869823	130894441	STRG.32936.1	-	130869823,130885095,130890293,130894343	130870126,130885268,130890466,130894441	0.833333
stomach_female_adult_51_years	chr4	87524562	87524573	87524562	-	RAMPAGE_only	7	7	16	1.486046	3.323231	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87494416	87528619	SPARCL1|ENST00000535835.5	-	87494416,87494980,87499520,87504821,87528554	87494598,87495127,87499585,87504923,87528619	0.625000
stomach_female_adult_51_years	chr16	29963558	29963561	29963560	+	High_confidence	8	13	16	1.486046	3.750000	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.500000
stomach_female_adult_51_years	chr7	154928492	154928504	154928503	+	High_confidence	13	13	24	2.229069	4.243300	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.833333
stomach_female_adult_51_years	chr17	42136477	42136481	42136477	-	High_confidence	5	6	14	1.300290	3.238901	chr17	42136440	42136680	SINE|MIR|MIRb	+	chr17	42128691	42136484	RAB5C|ENST00000550504.5	-	42128691,42130336,42136264	42128800,42130590,42136484	0.714286
stomach_female_adult_51_years	chr11	64242546	64242547	64242546	+	High_confidence	8	8	10	0.928779	3.121928	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
stomach_female_adult_51_years	chr1	23417904	23417997	23417917	-	RAMPAGE_only	11	11	106	9.845055	5.789877	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.971698
stomach_female_adult_51_years	chr12	91179462	91179526	91179462	-	High_confidence	3930	4072	11381	1057.043082	7.245736	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.653458
stomach_female_adult_51_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	9	9	10	0.928779	2.725481	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.500000
stomach_female_adult_51_years	chr6	168093050	168093101	168093055	-	High_confidence	45	47	116	10.773833	5.159158	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.767241
stomach_female_adult_51_years	chr9	128921399	128921411	128921399	+	High_confidence	7	7	13	1.207412	2.815072	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	1.000000
stomach_female_adult_51_years	chr16	12016664	12016682	12016681	+	RAMPAGE_only	5	5	10	0.928779	2.725481	chr16	12016451	12016798	LINE|L1|L1ME3Cz	-	chr16	12038709	12051868	SNX29|ENST00000568359.1	+	12038709,12042896,12046383,12048371,12051846	12038787,12043077,12046454,12048620,12051868	0.700000
stomach_female_adult_51_years	chr19	48868595	48868614	48868595	-	High_confidence	122	124	547	50.804197	7.219948	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.987203
stomach_female_adult_51_years	chr19	12800944	12801023	12800944	-	High_confidence	5	5	30	2.786336	4.373557	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12799861	12800461	PRDX2|ENST00000478908.1	-	12799861,12800176	12799989,12800461	0.566667
stomach_female_adult_51_years	chr14	81427441	81427467	81427441	-	High_confidence	2	2	10	0.928779	3.321928	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.900000
stomach_female_adult_51_years	chr1	162781388	162781426	162781388	+	High_confidence	4	4	15	1.393168	3.807355	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162781139	162786446	STRG.6094.2	+	162781139	162786446	0.933333
stomach_female_adult_51_years	chr6	35684471	35684485	35684484	-	High_confidence	4	5	15	1.393168	3.039149	chr6	35684181	35684477	SINE|Alu|AluJb	-	chr6	35683556	35684343	STRG.30904.1	-	35683556,35684110	35684082,35684343	0.666667
stomach_female_adult_51_years	chr8	30812418	30812454	30812453	-	High_confidence	18	18	38	3.529359	4.551462	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.947368
stomach_female_adult_51_years	chr18	57761903	57761942	57761903	-	RAMPAGE_only	4	4	11	1.021657	2.732159	chr18	57761672	57761967	SINE|Alu|AluSc	+	chr18	57669422	57731754	ATP8B1|ENST00000648467.1	-	57669422,57671467,57674833,57684035,57685071,57688298,57691806,57694581,57695170,57695449,57697617,57697794,57701038,57701214,57706489,57731626	57669482,57671580,57675054,57684192,57685115,57688507,57691997,57694670,57695329,57695532,57697688,57697867,57701100,57701313,57706587,57731754	0.636364
stomach_female_adult_51_years	chr7	134527596	134527597	134527596	+	High_confidence	178	183	187	17.368162	6.310447	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.946524
stomach_female_adult_51_years	chr11	117836274	117836329	117836328	+	RAMPAGE_only	2	2	8	0.743023	2.750000	chr11	117836254	117836523	SINE|Alu|AluJb	-	chr11	117833892	117837655	AP000757.1|ENST00000525260.5	+	117833892,117836268,117837167	117834061,117836502,117837655	0.500000
stomach_female_adult_51_years	chr11	123061128	123061322	123061256	-	High_confidence	100	102	329	30.556821	5.638896	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.948328
stomach_female_adult_51_years	chr7	73683420	73683453	73683420	-	High_confidence	9	9	33	3.064970	4.366681	chr7	73683365	73683430	LINE|RTE-BovB|MamRTE1	+	chr7	73680917	73683451	DNAJC30|NM_032317.2	-	73680917	73683451	1.000000
stomach_female_adult_51_years	chr14	65285131	65285134	65285131	+	RAMPAGE_only	60	72	125	11.609734	6.256558	chr14	65284944	65285417	LTR|ERVL-MaLR|MLT1C	+	chr14	65410591	65744121	FUT8|ENST00000360689.9	+	65410591,65455620,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65411993,65455718,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65744121	0.560000
stomach_female_adult_51_years	chr12	10363964	10363974	10363973	+	High_confidence	6	6	10	0.928779	3.121928	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.900000
stomach_female_adult_51_years	chr8	133499177	133499178	133499177	-	High_confidence	5	5	7	0.650145	2.521641	chr8	133499058	133499257	SINE|MIR|MIRb	+	chr8	133475883	133499361	ST3GAL1|ENST00000523855.1	-	133475883,133476277,133499134	133476074,133476600,133499361	0.857143
stomach_female_adult_51_years	chr11	61249500	61249513	61249500	+	High_confidence	3	4	8	0.743023	3.000000	chr11	61249400	61249513	LINE|L2|L2a	+	chr11	61249332	61251418	PGA5|ENST00000541528.1	+	61249332,61249915,61251131	61249813,61250014,61251418	0.875000
stomach_female_adult_51_years	chr20	34546854	34546865	34546854	+	High_confidence	2	3	7	0.650145	2.521641	chr20	34546707	34546884	LTR|ERVL-MaLR|MLT1J	-	chr20	34546853	34560345	MAP1LC3A|ENST00000374837.7	+	34546853,34549904,34559207,34559346,34559735	34546916,34550029,34559263,34559453,34560345	0.714286
stomach_female_adult_51_years	chr16	20399750	20399767	20399758	-	RAMPAGE_only	12	20	38	3.529359	4.790270	chr16	20399655	20399818	LINE|CR1|L3	-	chr16	20384644	20404556	PDILT|ENST00000575561.1	-	20384644,20388786,20399098,20404495	20384851,20388909,20399307,20404556	0.736842
stomach_female_adult_51_years	chr11	119046432	119046464	119046432	-	High_confidence	2	3	12	1.114534	2.855389	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119044461	119046596	STRG.55174.1	-	119044461,119045780,119046416,119046561	119045654,119045831,119046467,119046596	1.000000
stomach_female_adult_51_years	chr1	177970230	177970293	177970274	-	High_confidence	6	6	29	2.693458	3.661933	chr1	177970262	177970423	SINE|MIR|MIRb	+	chr1	177945331	177970213	SEC16B|ENST00000464631.6	-	177945331,177947824,177951913,177954278,177958131,177958839,177960341,177960790,177961589,177964170,177965046,177965892,177967682,177970189	177946531,177947942,177951995,177954376,177958362,177958975,177960403,177960942,177961734,177964279,177965167,177966005,177968039,177970213	0.896552
stomach_female_adult_51_years	chr19	10555125	10555126	10555125	-	High_confidence	7	7	9	0.835901	2.500000	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10554133	10555149	STRG.78972.1	-	10554133,10555086	10554281,10555149	0.777778
stomach_female_adult_51_years	chr21	28048446	28048447	28048446	+	High_confidence	307	310	345	32.042866	4.717761	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.982609
stomach_female_adult_51_years	chr1	159976797	159976827	159976816	+	High_confidence	3	3	14	1.300290	3.085055	chr1	159976818	159976895	SINE|Alu|FLAM_A	+	chr1	159976668	159977100	STRG.5718.1	+	159976668	159977100	0.642857
stomach_female_adult_51_years	chr3	50230995	50230996	50230995	+	High_confidence	11	11	11	1.021657	3.277613	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	1.000000
stomach_female_adult_51_years	chr8	53523963	53523967	53523966	-	High_confidence	4	6	10	0.928779	2.947703	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.900000
stomach_female_adult_51_years	chr13	110179288	110179316	110179288	-	RAMPAGE_only	2	2	12	1.114534	3.277613	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110174425	110192351	STRG.61717.1	-	110174425,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213	110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192351	0.916667
stomach_female_adult_51_years	chr11	77175302	77175303	77175302	+	High_confidence	9	9	13	1.207412	3.392747	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
stomach_female_adult_51_years	chr16	81181319	81181331	81181330	-	High_confidence	15	17	26	2.414825	4.251629	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.923077
stomach_female_adult_51_years	chr2	240022172	240022232	240022172	-	High_confidence	5	5	20	1.857557	2.839354	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	240011631	240021357	STRG.15038.1	-	240011631,240014738,240018552,240021196	240011696,240014860,240018639,240021357	1.000000
stomach_female_adult_51_years	chr14	68882878	68882906	68882879	-	High_confidence	4	7	17	1.578924	3.007196	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	1.000000
stomach_female_adult_51_years	chr15	57451523	57451576	57451559	+	RAMPAGE_only	9	9	28	2.600580	3.838040	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.964286
stomach_female_adult_51_years	chr12	53464773	53464834	53464773	+	RAMPAGE_only	3	3	23	2.136191	3.849224	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.826087
stomach_female_adult_51_years	chr1	176162915	176162963	176162936	-	RAMPAGE_only	6	7	15	1.393168	3.640224	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	176116645	176206440	COP1|ENST00000491600.5	-	176116645,176135009,176136487,176149005,176162868,176163814,176168664,176175909,176184632,176206348	176116681,176135086,176136547,176149074,176162988,176163891,176168748,176176007,176184692,176206440	0.733333
stomach_female_adult_51_years	chr8	32927967	32927968	32927967	+	RAMPAGE_only	7	7	10	0.928779	2.947703	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.800000
stomach_female_adult_51_years	chr1	12356414	12356456	12356414	+	High_confidence	3	4	11	1.021657	2.845351	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12356350	12510346	VPS13D|ENST00000646411.1	+	12356350,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12356524,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	0.818182
stomach_female_adult_51_years	chr21	33909085	33909095	33909085	-	High_confidence	3	3	10	0.928779	2.947703	chr21	33908880	33909038	DNA|hAT-Charlie|MER5A1	-	chr21	33903455	33909095	ATP5PO|ENST00000418933.1	-	33903455,33903934,33907340,33909081	33903656,33904021,33907453,33909095	0.900000
stomach_female_adult_51_years	chr8	38825356	38825367	38825360	+	RAMPAGE_only	7	9	19	1.764680	3.932138	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.947368
stomach_female_adult_51_years	chr11	64807612	64807636	64807612	-	RAMPAGE_only	6	6	11	1.021657	3.277613	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64804333	64810132	MEN1|ENST00000377313.5	-	64804333,64805033,64805634,64806231,64807010,64807178,64807551,64807890,64809649	64804816,64805198,64805770,64806368,64807098,64807219,64807680,64808099,64810132	1.000000
stomach_female_adult_51_years	chr9	20658338	20658349	20658348	+	High_confidence	6	12	17	1.578924	3.375000	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.647059
stomach_female_adult_51_years	chr5	134612933	134612938	134612933	-	High_confidence	6	6	13	1.207412	3.392747	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	1.000000
stomach_female_adult_51_years	chr1	52916439	52916490	52916439	-	High_confidence	4	4	20	1.857557	3.921928	chr1	52916375	52916563	SINE|MIR|MIRb	+	chr1	52916275	52916484	STRG.2993.1	-	52916275	52916484	0.800000
stomach_female_adult_51_years	chr9	122164574	122164596	122164595	+	High_confidence	73	95	174	16.160750	5.831634	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122164614	122174568	MORN5|ENST00000418632.1	+	122164614,122166767,122169644,122174495	122164647,122166915,122169756,122174568	0.522989
stomach_female_adult_51_years	chr4	86453184	86453232	86453202	-	High_confidence	16	16	120	11.145345	5.396189	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.800000
stomach_female_adult_51_years	chr3	135965673	135965762	135965723	+	High_confidence	23	30	158	14.674704	6.035951	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.974684
stomach_female_adult_51_years	chr7	6044569	6044570	6044569	-	RAMPAGE_only	4	5	7	0.650145	2.521641	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6041152	6046437	EIF2AK1|ENST00000470168.1	-	6041152,6042932,6044561,6046070	6041219,6042993,6044661,6046437	1.000000
stomach_female_adult_51_years	chr6	43013392	43013393	43013392	-	High_confidence	10	10	13	1.207412	3.392747	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
stomach_female_adult_51_years	chr7	7566514	7566534	7566514	-	High_confidence	55	60	206	19.132842	6.641431	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7552461	7566996	AC004982.2|ENST00000609497.5	-	7552461,7555155,7565913	7552922,7555189,7566996	0.820388
stomach_female_adult_51_years	chr17	19386333	19386414	19386333	-	High_confidence	8	11	43	3.993749	4.815459	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	1.000000
stomach_female_adult_51_years	chr1	147225865	147225866	147225865	-	High_confidence	11	12	14	1.300290	2.950212	chr1	147225754	147226210	LTR|ERV1|LTR2C	-	chr1	147213358	147225873	FMO5|ENST00000533848.2	-	147213358,147215753,147224894,147225728	147213470,147215942,147225066,147225873	0.928571
stomach_female_adult_51_years	chr3	195688686	195688768	195688724	+	High_confidence	2	2	14	1.300290	3.392747	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688755	195708806	MUC20-OT1|ENST00000628547.2	+	195688755,195689338,195696360,195699029,195708133,195708746	195688797,195689438,195696589,195699178,195708435,195708806	0.857143
stomach_female_adult_51_years	chr17	82081606	82081626	82081606	-	High_confidence	9	9	24	2.229069	3.882045	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82080217	82081349	STRG.76446.1	-	82080217,82080369,82080691,82081163	82080238,82080590,82080922,82081349	0.958333
stomach_female_adult_51_years	chr22	42644615	42644626	42644621	-	High_confidence	3	3	12	1.114534	3.277613	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	0.916667
stomach_female_adult_51_years	chr9	98943559	98943578	98943559	+	High_confidence	4	4	15	1.393168	3.521641	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.933333
stomach_female_adult_51_years	chr5	133089676	133089678	133089677	+	RAMPAGE_only	12	15	19	1.764680	3.616349	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.947368
stomach_female_adult_51_years	chr6	144533141	144533156	144533141	+	RAMPAGE_only	3	3	8	0.743023	2.521641	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144530947	144542844	STRG.33293.1	+	144530947,144533084,144537581,144539293,144542794	144531202,144533260,144537717,144539443,144542844	0.875000
stomach_female_adult_51_years	chr20	24930628	24930651	24930639	+	High_confidence	16	16	76	7.058718	5.616557	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930683	24931569	STRG.82133.1	+	24930683,24931346	24930774,24931569	0.526316
stomach_female_adult_51_years	chrX	7147267	7147288	7147287	+	High_confidence	7	7	12	1.114534	3.418296	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.833333
stomach_female_adult_51_years	chr7	53811930	53811942	53811941	-	High_confidence	4	4	9	0.835901	3.169925	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.777778
stomach_female_adult_51_years	chr1	166850301	166850330	166850301	+	RAMPAGE_only	2	2	9	0.835901	2.750000	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.888889
stomach_female_adult_51_years	chr17	50271485	50271488	50271487	+	High_confidence	8	13	13	1.207412	3.392747	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
stomach_female_adult_51_years	chr8	56559496	56559497	56559496	-	High_confidence	25	26	28	2.600580	4.430632	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.500000
stomach_female_adult_51_years	chr9	111284874	111284875	111284874	-	High_confidence	19	19	21	1.950435	3.826875	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.904762
stomach_female_adult_51_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	10	10	10	0.928779	2.921928	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
stomach_female_adult_51_years	chr2	238300045	238300109	238300045	-	High_confidence	2	2	19	1.764680	3.681881	chr2	238299957	238300152	LTR|ERVL|ERV3-16A3_I-int	+	chr2	238295391	238300620	AC012485.2|ENST00000437372.2	-	238295391,238298639,238299801,238300511	238295740,238298776,238300188,238300620	0.736842
stomach_female_adult_51_years	chr1	1655378	1655411	1655409	-	RAMPAGE_only	30	43	74	6.872963	5.398394	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.743243
stomach_female_adult_51_years	chr11	3380960	3380961	3380960	+	High_confidence	19	21	22	2.043313	3.689704	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.681818
stomach_female_adult_51_years	chr17	41871726	41871748	41871726	-	RAMPAGE_only	2	2	12	1.114534	3.084963	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.916667
stomach_female_adult_51_years	chr13	106561950	106561951	106561950	-	RAMPAGE_only	5	5	7	0.650145	2.521641	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543326	106568137	ARGLU1|ENST00000472226.2	-	106543326,106557047,106567572	106544160,106559657,106568137	0.571429
stomach_female_adult_51_years	chr8	27977120	27977126	27977125	-	High_confidence	61	68	119	11.052467	5.444722	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27871856	27977112	STRG.39847.3	-	27871856,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977112	0.924370
stomach_female_adult_51_years	chr2	48529385	48529386	48529385	+	High_confidence	4	4	7	0.650145	2.584963	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	0.571429
stomach_female_adult_51_years	chr18	46087007	46087032	46087007	-	High_confidence	2	2	8	0.743023	2.750000	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	1.000000
stomach_female_adult_51_years	chr1	27105889	27105908	27105889	-	High_confidence	1	2	7	0.650145	2.584963	chr1	27105645	27105840	SINE|MIR|MIR3	-	chr1	27102088	27106000	STRG.1760.1	-	27102088,27102384,27102672,27103222,27105884	27102130,27102558,27102743,27103312,27106000	0.857143
stomach_female_adult_51_years	chr2	3533917	3533935	3533934	-	High_confidence	32	34	63	5.851306	4.956224	chr2	3533849	3534784	LTR|ERV1|LTR27E	+	chr2	3531983	3533782	AC108488.1|ENST00000439547.5	-	3531983,3533107,3533710	3532310,3533190,3533782	0.809524
stomach_female_adult_51_years	chr7	7566038	7566039	7566038	-	High_confidence	8	9	10	0.928779	2.641604	chr7	7565778	7566082	SINE|Alu|AluSc	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.900000
stomach_female_adult_51_years	chrX	136167003	136167005	136167003	+	High_confidence	15	28	40	3.715115	4.733870	chrX	136166859	136167051	SINE|MIR|MIR	-	chrX	136167003	136208575	FHL1|ENST00000452016.5	+	136167003,136169906,136206406,136207015,136207791,136208454	136167077,136169980,136206588,136207190,136207961,136208575	0.800000
stomach_female_adult_51_years	chr12	119179219	119179244	119179224	+	High_confidence	4	5	18	1.671802	3.308271	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178959	119179594	STRG.59242.1	+	119178959	119179594	0.777778
stomach_female_adult_51_years	chr10	95437804	95437816	95437815	-	RAMPAGE_only	6	6	14	1.300290	3.392747	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.785714
stomach_female_adult_51_years	chr11	57794021	57794024	57794023	+	High_confidence	4	7	9	0.835901	2.500000	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57793715	57808535	STRG.52860.2	+	57793715,57795576,57796456,57801732,57803620,57804662,57805881,57806914,57808164	57794081,57795729,57796992,57802196,57803804,57804780,57806035,57806983,57808535	0.888889
stomach_female_adult_51_years	chr17	50358199	50358231	50358199	+	High_confidence	4	4	22	2.043313	3.535175	chr17	50358011	50358216	SINE|MIR|MIR3	-	chr17	50358225	50360243	STRG.74800.1	+	50358225,50359968	50358540,50360243	0.909091
stomach_female_adult_51_years	chr1	174874418	174874441	174874433	+	High_confidence	2	2	9	0.835901	2.947703	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.777778
stomach_female_adult_51_years	chr6	118651542	118651602	118651592	-	High_confidence	28	28	167	15.510605	5.972714	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.988024
stomach_female_adult_51_years	chr1	222737289	222737290	222737289	+	High_confidence	8	8	9	0.835901	2.750000	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.888889
stomach_female_adult_51_years	chr2	232816713	232816732	232816731	+	RAMPAGE_only	5	5	13	1.207412	3.418296	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232815632	232820124	STRG.14624.1	+	232815632,232816870,232819826	232815737,232817032,232820124	0.923077
stomach_female_adult_51_years	chr21	46256859	46256905	46256859	-	High_confidence	3	3	16	1.486046	3.202820	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.812500
stomach_female_adult_51_years	chr5	150092616	150092617	150092616	-	RAMPAGE_only	17	17	18	1.671802	3.381580	chr5	150092452	150092809	LTR|ERVL-MaLR|THE1B	-	chr5	150053290	150086640	CSF1R|NM_001288705.1	-	150053290,150054321,150055236,150056025,150056218,150057286,150057503,150059699,150060861,150061490,150061722,150068214,150069872,150070181,150070455,150073300,150077275,150078111,150080051,150080766,150086378	150054224,150054430,150055336,150056137,150056341,150057384,150057592,150059862,150060972,150061595,150061849,150068330,150070063,150070302,150070571,150073493,150077435,150078248,150080336,150081024,150086640	0.833333
stomach_female_adult_51_years	chr14	96858908	96858911	96858910	+	High_confidence	4	7	9	0.835901	2.750000	chr14	96858528	96859534	LINE|L1|L1ME3A	-	chr14	96858908	96881391	VRK1|ENST00000555067.1	+	96858908,96860556,96876029,96881176	96859027,96860735,96876120,96881391	0.666667
stomach_female_adult_51_years	chr5	32403115	32403169	32403115	-	RAMPAGE_only	5	7	17	1.578924	3.852169	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32387558	32397285	STRG.25764.1	-	32387558,32388468,32390274,32395158,32397218	32387699,32388674,32390437,32395304,32397285	0.882353
stomach_female_adult_51_years	chr7	134527627	134527655	134527627	+	High_confidence	2	2	9	0.835901	2.500000	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527619	134537087	AKR1B10|ENST00000475559.1	+	134527619,134530642,134531907,134533003,134535616,134536708,134537050	134527977,134530810,134532024,134533081,134535663,134536772,134537087	0.888889
stomach_female_adult_51_years	chr19	55069522	55069540	55069539	-	High_confidence	3	3	6	0.557267	2.584963	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55044323	55069546	RDH13|NM_138412.3	-	55044323,55047386,55048328,55048658,55056652,55059156,55064295,55069321	55045309,55047488,55048541,55048763,55056808,55059275,55064412,55069546	0.500000
stomach_female_adult_51_years	chr11	134467264	134467293	134467264	+	High_confidence	14	14	27	2.507703	4.106377	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134467398	134469543	STRG.55586.1	+	134467398,134467864,134469486	134467615,134467987,134469543	0.740741
stomach_female_adult_51_years	chr21	29077486	29077487	29077486	+	High_confidence	7	7	9	0.835901	2.725481	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.555556
stomach_female_adult_51_years	chr22	39021125	39021156	39021146	+	High_confidence	3	4	13	1.207412	2.931209	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
stomach_female_adult_51_years	chr3	132285545	132285558	132285557	-	High_confidence	5	11	21	1.950435	4.106603	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.761905
stomach_female_adult_51_years	chr4	141332616	141332617	141332616	-	High_confidence	68	70	75	6.965841	3.982764	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.973333
stomach_female_adult_51_years	chr11	64226142	64226180	64226158	-	High_confidence	39	40	194	18.018308	6.503170	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.989691
stomach_female_adult_51_years	chr6	76774935	76774976	76774935	+	High_confidence	3	3	17	1.578924	3.500000	chr6	76774716	76775166	LTR|ERVL|MER70A	+	chr6	76774982	76775860	AL590426.2|ENST00000607287.1	+	76774982,76775167	76775075,76775860	0.705882
stomach_female_adult_51_years	chr12	122064375	122064376	122064375	+	RAMPAGE_only	7	7	10	0.928779	2.503258	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.700000
stomach_female_adult_51_years	chr9	123179187	123179221	123179187	-	RAMPAGE_only	3	3	8	0.743023	3.000000	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.875000
stomach_female_adult_51_years	chr10	5699514	5699523	5699522	+	High_confidence	2	2	7	0.650145	2.521641	chr10	5699528	5699730	LINE|L1|L1M7	+	chr10	5699492	5714207	FAM208B|ENST00000463468.5	+	5699492,5712393,5712822,5714134	5699737,5712539,5712918,5714207	0.857143
stomach_female_adult_51_years	chr4	152412488	152412529	152412528	-	High_confidence	12	16	44	4.086626	4.771598	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.977273
stomach_female_adult_51_years	chr1	107754776	107754823	107754822	-	RAMPAGE_only	4	6	15	1.393168	3.640224	chr1	107754420	107755105	LINE|L2|L2a	+	chr1	107573168	107785624	VAV3|ENST00000343258.8	-	107573168,107574046,107596211,107602396,107603046,107609930,107617566,107642618,107683487,107688380,107704549,107704959,107748967,107749461,107751116,107755426,107757260,107760783,107765075,107766446,107768440,107770635,107772734,107777230,107779433,107785457	107573372,107574198,107596341,107602484,107603163,107609965,107617632,107642755,107683533,107688406,107704650,107705061,107749077,107749594,107751202,107755513,107757329,107760879,107765175,107766550,107768509,107770728,107772843,107777296,107779492,107785624	0.933333
stomach_female_adult_51_years	chr2	229586806	229586903	229586902	-	High_confidence	7	7	38	3.529359	4.702565	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229580153	229587177	DNER|ENST00000482831.1	-	229580153,229585857,229586693	229580344,229586024,229587177	0.578947
stomach_female_adult_51_years	chr1	166850123	166850131	166850123	+	RAMPAGE_only	6	11	20	1.857557	3.787144	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166846383	166852762	STRG.6221.1	+	166846383,166847493,166848937,166852584	166846738,166847592,166850423,166852762	0.950000
stomach_female_adult_51_years	chr20	34369398	34369419	34369418	+	RAMPAGE_only	4	4	9	0.835901	2.750000	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.888889
stomach_female_adult_51_years	chrX	16712899	16712909	16712899	-	High_confidence	2	2	6	0.557267	2.584963	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.833333
stomach_female_adult_51_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	6	6	6	0.557267	2.584963	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
stomach_female_adult_51_years	chr3	151539250	151539278	151539277	-	RAMPAGE_only	3	3	10	0.928779	2.503258	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.600000
stomach_female_adult_51_years	chr4	2867798	2867815	2867798	+	High_confidence	3	3	9	0.835901	2.725481	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
stomach_female_adult_51_years	chr9	95831779	95831801	95831800	-	RAMPAGE_only	22	25	103	9.566421	5.373902	chr9	95831563	95831844	LTR|ERVL|LTR16D	+	chr9	95806087	95875977	LINC00476|NR_023390.1	-	95806087,95850226,95875864	95813922,95850292,95875977	0.543689
stomach_female_adult_51_years	chr2	164839323	164839361	164839323	+	RAMPAGE_only	2	2	12	1.114534	3.418296	chr2	164839310	164839440	SINE|Alu|AluJr	+	chr2	164840671	165094117	AC019197.1|ENST00000638199.1	+	164840671,164848841,164945583,164949934,164959254,164960898,165091119,165091829	164840822,164849402,164945671,164950133,164959329,164960967,165091299,165094117	0.583333
stomach_female_adult_51_years	chr6	127330872	127330929	127330917	-	High_confidence	4	4	13	1.207412	3.392747	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.923077
stomach_female_adult_51_years	chr19	16082010	16082030	16082029	+	High_confidence	2	2	7	0.650145	2.584963	chr19	16082077	16082207	SINE|MIR|MIRb	+	chr19	16081722	16093581	TPM4|ENST00000592138.5	+	16081722,16086422,16088026,16089044,16093535	16082046,16086540,16088097,16089120,16093581	0.857143
stomach_female_adult_51_years	chr22	37755619	37755658	37755657	+	High_confidence	4	4	13	1.207412	3.085055	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37754881	37758292	STRG.85491.4	+	37754881,37755100,37755549,37757612	37754984,37755190,37755659,37758292	1.000000
stomach_female_adult_51_years	chr10	119402019	119402037	119402036	+	RAMPAGE_only	4	4	8	0.743023	2.750000	chr10	119401840	119402131	LTR|ERVL-MaLR|MLT1I	-	chr10	119207684	119455619	GRK5|NM_005308.2	+	119207684,119326515,119380814,119396694,119423165,119424992,119430374,119431386,119436650,119439730,119441998,119443543,119448122,119452670,119453144,119454968	119207969,119326611,119380927,119396772,119423266,119425085,119430438,119431527,119436841,119439768,119442088,119443752,119448260,119452808,119453276,119455619	0.625000
stomach_female_adult_51_years	chr12	9065162	9065174	9065162	+	High_confidence	3	3	7	0.650145	2.521641	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	1.000000
stomach_female_adult_51_years	chr14	91462209	91462224	91462209	-	High_confidence	8	9	19	1.764680	3.836592	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.684211
stomach_female_adult_51_years	chr2	159428314	159428357	159428356	-	RAMPAGE_only	7	8	14	1.300290	3.392747	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159412431	159432950	BAZ2B|ENST00000441143.1	-	159412431,159427940,159428310,159429199,159432756	159412545,159428042,159428419,159429260,159432950	0.500000
stomach_female_adult_51_years	chr7	30568893	30568913	30568912	-	RAMPAGE_only	5	5	11	1.021657	3.121928	chr7	30568321	30569340	LTR|ERV1|MER4-int	+	chr7	30558095	30573088	GARS-DT|ENST00000584621.5	-	30558095,30561465,30563730,30568832,30572999	30559355,30562128,30563998,30568989,30573088	0.727273
stomach_female_adult_51_years	chr3	71135227	71135255	71135227	-	RAMPAGE_only	11	11	22	2.043313	3.879664	chr3	71134976	71135278	SINE|Alu|AluSc	+	chr3	70959246	71132211	FOXP1|ENST00000649592.1	-	70959246,70965889,70970735,70972554,70976940,70977642,70977827,70987993,71000971,71015548,71041327,71046941,71052536,71053635,71112535,71132090	70959391,70966056,70970805,70972676,70977042,70977722,70978029,70988077,71001059,71015653,71041532,71047095,71052626,71053773,71112637,71132211	0.500000
stomach_female_adult_53_years	chr11	57793995	57794024	57793995	+	RAMPAGE_only	56	62	116	10.764013	5.864437	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.974138
stomach_female_adult_53_years	chr19	10555125	10555126	10555125	-	High_confidence	15	15	20	1.855864	3.521928	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553981	10555159	STRG.60743.1	-	10553981,10555086	10554281,10555159	0.900000
stomach_female_adult_53_years	chr2	96303166	96303280	96303166	-	RAMPAGE_only	23	23	58	5.382006	5.271774	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.982759
stomach_female_adult_53_years	chr6	168093050	168093063	168093055	-	High_confidence	128	132	300	27.837964	6.362893	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.720000
stomach_female_adult_53_years	chr21	43067980	43067986	43067980	-	High_confidence	4	4	10	0.927932	3.169925	chr21	43067853	43068123	LTR|ERV1|MER92B	+	chr21	43065667	43067877	STRG.64824.1	-	43065667,43066242,43067777	43065695,43066377,43067877	0.700000
stomach_female_adult_53_years	chr8	12565883	12565884	12565883	+	RAMPAGE_only	11	11	14	1.299105	3.180833	chr8	12565799	12565977	LTR|ERVK|HERVK-int	+	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.571429
stomach_female_adult_53_years	chr2	48529375	48529386	48529385	+	High_confidence	13	13	32	2.969383	4.452820	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	0.687500
stomach_female_adult_53_years	chr9	4626578	4626596	4626582	-	RAMPAGE_only	9	9	46	4.268488	4.269770	chr9	4625982	4626718	LTR|ERVL|LTR50	+	chr9	4625637	4666399	SPATA6L|ENST00000451763.6	-	4625637,4635274,4646486,4656040,4661898,4666211	4629168,4635399,4646528,4656089,4662036,4666399	0.913043
stomach_female_adult_53_years	chr7	134527596	134527597	134527596	+	High_confidence	711	723	757	70.244464	7.162967	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.944518
stomach_female_adult_53_years	chr1	220090402	220090421	220090402	-	High_confidence	2	2	8	0.742346	2.521641	chr1	220090323	220090490	SINE|Alu|AluJr	-	chr1	220057483	220090462	BPNT1|ENST00000469520.6	-	220057483,220059685,220062756,220067301,220069383,220072849,220073966,220079726,220089685,220090286	220058992,220059791,220062954,220067393,220069432,220072957,220074071,220079854,220089951,220090462	0.875000
stomach_female_adult_53_years	chr10	94923106	94923110	94923106	+	High_confidence	5	5	9	0.835139	2.641604	chr10	94922422	94923572	DNA|TcMar-Tigger|Tigger1	+	chr10	94923195	94938785	STRG.38873.2	+	94923195,94938436	94923333,94938785	1.000000
stomach_female_adult_53_years	chr9	20658334	20658349	20658342	+	High_confidence	4	4	20	1.855864	3.115834	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.850000
stomach_female_adult_53_years	chr20	3795750	3795789	3795788	+	High_confidence	6	6	29	2.691003	3.952303	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	1.000000
stomach_female_adult_53_years	chr8	144160987	144160992	144160991	+	High_confidence	4	7	12	1.113519	3.095795	chr8	144160811	144161348	LTR|ERVL-MaLR|MLT1E2	-	chr8	144161024	144261927	MROH1|ENST00000528919.5	+	144161024,144163770,144168294,144179454,144180177,144180424,144190783,144191714,144192308,144199121,144200427,144220599,144223107,144238755,144239034,144239322,144239613,144240100,144240569,144240991,144241394,144242368,144242601,144243493,144243862,144244221,144244443,144245155,144247300,144247566,144248876,144250211,144254812,144255508,144258776,144259239,144259910,144260185,144260676,144260906,144261113,144261283,144261654	144161089,144163848,144168440,144179586,144180340,144180523,144190935,144191855,144192401,144199200,144200541,144220673,144223230,144238863,144239179,144239363,144239755,144240153,144240677,144241111,144241517,144242515,144242628,144243616,144243942,144244336,144244539,144245260,144247436,144247679,144249029,144250366,144254978,144255705,144258914,144259354,144260057,144260374,144260832,144261041,144261216,144261349,144261927	0.916667
stomach_female_adult_53_years	chr2	204544974	204544986	204544985	+	High_confidence	6	8	10	0.927932	2.646439	chr2	204544936	204545029	SINE|MIR|MIR3	+	chr2	204545792	205048595	PARD3B|ENST00000415947.1	+	204545792,204686180,204965151,205047580	204546171,204686282,204965323,205048595	1.000000
stomach_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	16	17	17	1.577485	3.750000	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.705882
stomach_female_adult_53_years	chr15	57451531	57451535	57451531	+	RAMPAGE_only	10	10	22	2.041451	3.422578	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.909091
stomach_female_adult_53_years	chr19	19599303	19599317	19599303	-	RAMPAGE_only	7	8	14	1.299105	3.182006	chr19	19599003	19599266	SINE|Alu|AluSp	-	chr19	19570225	19579954	PBX4|ENST00000559735.1	-	19570225,19579831	19570871,19579954	0.785714
stomach_female_adult_53_years	chr18	39800293	39800305	39800297	-	High_confidence	4	4	14	1.299105	3.546594	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.714286
stomach_female_adult_53_years	chr21	33448819	33448835	33448834	-	High_confidence	6	6	15	1.391898	3.378783	chr21	33448743	33448924	SINE|Alu|AluJo	+	chr21	33432484	33448964	TMEM50B|ENST00000484377.5	-	33432484,33436882,33439213,33448781	33432802,33436992,33439297,33448964	0.933333
stomach_female_adult_53_years	chr17	28234009	28234043	28234014	-	RAMPAGE_only	12	12	55	5.103627	5.113089	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	1.000000
stomach_female_adult_53_years	chr22	23705467	23705514	23705513	-	RAMPAGE_only	19	19	72	6.681111	4.969293	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23695190	23697926	STRG.65211.4	-	23695190,23697882	23695512,23697926	0.972222
stomach_female_adult_53_years	chr11	65440710	65440882	65440781	+	RAMPAGE_only	59	60	490	45.468675	5.770514	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
stomach_female_adult_53_years	chrX	20102072	20102094	20102093	-	RAMPAGE_only	3	5	9	0.835139	2.641604	chrX	20101956	20102177	LINE|L1|L1ME3	+	chrX	20008338	20116632	MAP7D2|ENST00000452324.3	-	20008338,20010776,20012348,20013053,20013568,20015222,20016093,20024950,20025680,20042501,20044363,20052877,20056679,20063413,20064727,20116530	20008398,20011052,20012535,20013132,20013625,20015327,20016325,20025083,20025952,20042629,20044500,20052988,20056791,20063577,20064805,20116632	1.000000
stomach_female_adult_53_years	chr10	44971686	44971687	44971686	+	High_confidence	8	10	11	1.020725	2.646439	chr10	44971649	44971712	SINE|MIR|MIRb	-	chr10	44971793	44993430	RASSF4|ENST00000472561.5	+	44971793,44982520,44984812,44989273,44989669,44990947,44991904,44993268	44971848,44982663,44984970,44989375,44989721,44991069,44992002,44993430	0.818182
stomach_female_adult_53_years	chr3	101466856	101466875	101466874	-	RAMPAGE_only	7	7	15	1.391898	3.324863	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.933333
stomach_female_adult_53_years	chr11	64841884	64841885	64841884	-	RAMPAGE_only	6	6	8	0.742346	2.500000	chr11	64841855	64841904	SINE|MIR|MIR3	+	chr11	64823386	64844569	CDC42BPG|ENST00000342711.5	-	64823386,64826469,64826670,64827049,64827277,64827526,64827685,64829470,64830193,64831504,64832427,64832603,64832825,64833230,64833599,64833737,64833924,64834265,64834428,64834848,64835046,64835346,64835499,64835761,64836116,64836426,64836738,64836921,64838082,64838653,64839032,64839477,64840119,64840552,64841649,64841812,64844409	64824529,64826555,64826794,64827167,64827398,64827611,64827783,64830070,64830256,64831721,64832509,64832743,64832959,64833336,64833659,64833836,64833977,64834354,64834577,64834963,64835153,64835419,64835621,64835851,64836296,64836530,64836819,64837019,64838162,64838902,64839233,64839571,64840268,64840648,64841733,64841904,64844569	1.000000
stomach_female_adult_53_years	chr11	43881075	43881089	43881087	+	High_confidence	9	13	33	3.062176	4.567100	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.696970
stomach_female_adult_53_years	chrX	7147287	7147288	7147287	+	High_confidence	45	45	55	5.103627	5.085055	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147298	7147603	STRG.66431.1	+	7147298	7147603	0.709091
stomach_female_adult_53_years	chr7	30585448	30585469	30585448	-	High_confidence	3	3	8	0.742346	2.500000	chr7	30585198	30585502	SINE|Alu|AluSx	+	chr7	30577511	30585972	GARS-DT|ENST00000454922.6	-	30577511,30579230,30584710,30585329	30578091,30579314,30584808,30585972	0.875000
stomach_female_adult_53_years	chr3	48979425	48979471	48979470	+	High_confidence	8	8	25	2.319830	3.849224	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48979566	48985419	STRG.12933.1	+	48979566,48980352,48981659,48982895,48983198	48979633,48980496,48981728,48982979,48985419	0.880000
stomach_female_adult_53_years	chr1	100233671	100233672	100233671	-	RAMPAGE_only	6	7	7	0.649553	2.584963	chr1	100233544	100234128	LTR|ERV1|LTR10C	-	chr1	100210542	100249820	DBT|ENST00000370131.3	-	100210542,100214816,100215982,100218625,100230732,100235435,100240760,100249769	100211124,100214983,100216199,100218747,100230914,100235511,100240884,100249820	0.857143
stomach_female_adult_53_years	chr13	48492622	48492663	48492655	-	High_confidence	5	5	26	2.412624	4.103910	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.961538
stomach_female_adult_53_years	chr16	69996463	69996464	69996463	-	RAMPAGE_only	6	6	8	0.742346	3.000000	chr16	69996297	69996477	SINE|MIR|MIRb	+	chr16	69993019	70021930	PDXDC2P-NPIPB14P|ENST00000525331.5	-	69993019,69996068,69996389,70010750,70011840,70014103,70018046,70021823	69993248,69996226,69996468,70010856,70011929,70014167,70018097,70021930	1.000000
stomach_female_adult_53_years	chr7	7566514	7566534	7566514	-	High_confidence	10	13	45	4.175695	5.036616	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7552461	7566996	AC004982.2|ENST00000609497.5	-	7552461,7555155,7565913	7552922,7555189,7566996	0.911111
stomach_female_adult_53_years	chr4	851139	851140	851139	-	High_confidence	34	34	39	3.618935	4.178738	chr4	851102	851393	SINE|Alu|AluJb	-	chr4	849275	851673	GAK|ENST00000502799.1	-	849275,849891	849774,851673	0.974359
stomach_female_adult_53_years	chr19	51027520	51027684	51027667	-	High_confidence	18	18	121	11.227979	6.119126	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.545455
stomach_female_adult_53_years	chr6	28354041	28354062	28354041	-	High_confidence	5	6	11	1.020725	2.921928	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329610	28354065	ZSCAN31|ENST00000444081.5	-	28329610,28336789,28337798,28353861	28329714,28336943,28337893,28354065	0.727273
stomach_female_adult_53_years	chr14	91462174	91462224	91462223	-	High_confidence	5	5	22	2.041451	3.384184	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.818182
stomach_female_adult_53_years	chr2	3536845	3536868	3536845	-	High_confidence	3	3	9	0.835139	2.725481	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3533223	3536869	AC108488.1|ENST00000438482.1	-	3533223,3534112,3536723	3533848,3534255,3536869	0.555556
stomach_female_adult_53_years	chr13	29827205	29827266	29827265	-	High_confidence	9	9	23	2.134244	4.349649	chr13	29823715	29829837	LINE|L1|L1PA5	-	chr13	29826422	29828063	STRG.47234.1	-	29826422	29828063	0.956522
stomach_female_adult_53_years	chr15	94099309	94099384	94099383	-	RAMPAGE_only	6	6	37	3.433349	4.725481	chr15	94099050	94099714	LINE|L1|L1M4a2	+	chr15	94064368	94070820	LINC01579|ENST00000555772.1	-	94064368,94066768,94070523	94065292,94066879,94070820	0.621622
stomach_female_adult_53_years	chr16	10428898	10428899	10428898	+	High_confidence	13	13	15	1.391898	3.324863	chr16	10428876	10429027	SINE|Alu|AluJo	-	chr16	10428899	10431126	STRG.53570.1	+	10428899,10430610	10429016,10431126	0.933333
stomach_female_adult_53_years	chr2	181954491	181954520	181954491	+	High_confidence	3	3	21	1.948658	3.576618	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.809524
stomach_female_adult_53_years	chr9	122164574	122164596	122164595	+	High_confidence	26	32	58	5.382006	5.107812	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122164614	122174568	MORN5|ENST00000418632.1	+	122164614,122166767,122169644,122174495	122164647,122166915,122169756,122174568	0.586207
stomach_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	20	20	22	2.041451	4.021928	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.772727
stomach_female_adult_53_years	chr10	103898878	103898923	103898878	-	RAMPAGE_only	4	4	10	0.927932	3.321928	chr10	103898660	103898839	SINE|MIR|MIR	-	chr10	103889134	103897627	STRG.39321.1	-	103889134,103892129,103897547	103889144,103892252,103897627	0.600000
stomach_female_adult_53_years	chr19	9140390	9140428	9140427	+	High_confidence	14	14	57	5.289213	5.016915	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.807018
stomach_female_adult_53_years	chr1	107754773	107754823	107754792	-	RAMPAGE_only	4	5	15	1.391898	3.521641	chr1	107754420	107755105	LINE|L2|L2a	+	chr1	107573168	107785624	VAV3|ENST00000343258.8	-	107573168,107574046,107596211,107602396,107603046,107609930,107617566,107642618,107683487,107688380,107704549,107704959,107748967,107749461,107751116,107755426,107757260,107760783,107765075,107766446,107768440,107770635,107772734,107777230,107779433,107785457	107573372,107574198,107596341,107602484,107603163,107609965,107617632,107642755,107683533,107688406,107704650,107705061,107749077,107749594,107751202,107755513,107757329,107760879,107765175,107766550,107768509,107770728,107772843,107777296,107779492,107785624	0.800000
stomach_female_adult_53_years	chr16	67183423	67183467	67183453	-	High_confidence	4	4	21	1.948658	3.884184	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.904762
stomach_female_adult_53_years	chr1	184811020	184811045	184811020	-	RAMPAGE_only	4	4	14	1.299105	3.180833	chr1	184810857	184811494	LTR|ERV1|MER57-int	+	chr1	184794117	184868041	FAM129A|ENST00000487074.5	-	184794117,184798078,184803584,184805945,184808073,184818637,184823166,184831846,184867863	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184831962,184868041	0.642857
stomach_female_adult_53_years	chr1	179517545	179517569	179517545	+	RAMPAGE_only	44	45	103	9.557701	5.741024	chr1	179516075	179517979	LINE|L1|L1PB1	-	chr1	179491702	179554735	AXDND1|ENST00000484883.1	+	179491702,179492854,179509295,179525333,179528326,179532969,179533794,179534729,179554511	179491737,179492951,179509403,179525447,179528431,179533104,179533877,179534962,179554735	0.932039
stomach_female_adult_53_years	chr17	47679961	47679973	47679961	+	High_confidence	10	10	20	1.855864	3.646439	chr17	47679684	47679996	SINE|Alu|AluY	-	chr17	47679879	47682589	KPNB1|ENST00000580158.1	+	47679879,47680507,47682403	47680134,47680669,47682589	1.000000
stomach_female_adult_53_years	chr10	116929848	116929849	116929848	-	RAMPAGE_only	9	9	10	0.927932	2.725481	chr10	116929745	116929837	LINE|L2|L2b	-	chr10	116884796	116974170	SHTN1|ENST00000497044.5	-	116884796,116901764,116906626,116911789,116915374,116921433,116927791,116929848,116940465,116944923,116948915,116951908,116954041,116960135,116968651,116973855	116886566,116901957,116906747,116911843,116915484,116921516,116927891,116930002,116940612,116945018,116948997,116952006,116954210,116960230,116968712,116974170	0.900000
stomach_female_adult_53_years	chr7	64990069	64990089	64990069	-	High_confidence	4	4	14	1.299105	3.664498	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.785714
stomach_female_adult_53_years	chr1	222737198	222737290	222737289	+	High_confidence	180	189	810	75.162504	7.115176	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.760494
stomach_female_adult_53_years	chr10	69416547	69416600	69416599	-	High_confidence	6	6	10	0.927932	2.921928	chr10	69416596	69416765	SINE|MIR|MIR3	-	chr10	69404483	69416867	TACR2|ENST00000373306.4	-	69404483,69407083,69408921,69414944,69415931	69405084,69407280,69409075,69415139,69416867	0.900000
stomach_female_adult_53_years	chr19	10825211	10825212	10825211	+	RAMPAGE_only	8	8	8	0.742346	2.750000	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	1.000000
stomach_female_adult_53_years	chr17	56904425	56904438	56904425	-	High_confidence	13	13	34	3.154969	4.248495	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.882353
stomach_female_adult_53_years	chr16	27330147	27330186	27330147	+	RAMPAGE_only	9	9	21	1.948658	3.916127	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27341288	27364777	IL4R|ENST00000170630.6	+	27341288,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27364777	0.619048
stomach_female_adult_53_years	chr4	81154211	81154222	81154211	-	High_confidence	5	6	20	1.855864	3.260828	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.950000
stomach_female_adult_53_years	chr2	240022172	240022173	240022172	-	RAMPAGE_only	11	11	12	1.113519	2.732159	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.916667
stomach_female_adult_53_years	chr10	45594343	45594355	45594354	-	High_confidence	3	3	9	0.835139	2.725481	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45461386	45594491	MARCH8|ENST00000453980.3	-	45461386,45464238,45489366,45533109,45553111,45594234	45461411,45464327,45489417,45533289,45553204,45594491	1.000000
stomach_female_adult_53_years	chr3	135965718	135965765	135965748	+	High_confidence	16	17	116	10.764013	5.621055	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965716	136040905	STRG.14915.2	+	135965716,136001058,136040858	135965849,136003493,136040905	0.939655
stomach_female_adult_53_years	chrX	73837493	73837504	73837503	-	RAMPAGE_only	6	7	12	1.113519	2.855389	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
stomach_female_adult_53_years	chr6	36540276	36540277	36540276	-	RAMPAGE_only	9	10	11	1.020725	3.277613	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36524349	36547207	STRG.24316.1	-	36524349,36525590,36540071,36547189	36524463,36525642,36540204,36547207	1.000000
stomach_female_adult_53_years	chr12	13376261	13376262	13376261	-	High_confidence	7	9	10	0.927932	2.947703	chr12	13376083	13376246	DNA|hAT-Charlie|Charlie15a	-	chr12	13373013	13376430	LINC01559|ENST00000527705.2	-	13373013,13376223	13373438,13376430	0.900000
stomach_female_adult_53_years	chr3	155664978	155664995	155664980	-	RAMPAGE_only	4	6	13	1.206312	3.180833	chr3	155664915	155665290	LTR|ERVL-MaLR|MLT1J2	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	1.000000
stomach_female_adult_53_years	chr4	8436010	8436026	8436023	-	RAMPAGE_only	5	5	15	1.391898	3.139572	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.733333
stomach_female_adult_53_years	chr22	38738347	38738373	38738372	-	RAMPAGE_only	6	6	17	1.577485	3.572469	chr22	38738364	38738415	SINE|MIR|MIR1_Amn	+	chr22	38737759	38739423	SUN2|ENST00000455125.1	-	38737759,38738586,38738872,38739341	38738265,38738754,38738988,38739423	0.823529
stomach_female_adult_53_years	chr16	27243356	27243371	27243370	-	RAMPAGE_only	8	8	13	1.206312	3.022055	chr16	27243362	27243410	LINE|L2|L2c	+	chr16	27226736	27268740	NSMCE1|ENST00000563273.5	-	27226736,27233000,27234187,27235177,27257434,27268705	27226833,27233147,27234265,27235299,27257581,27268740	0.692308
stomach_female_adult_53_years	chr9	38604189	38604190	38604189	-	RAMPAGE_only	10	10	10	0.927932	2.921928	chr9	38604017	38604311	SINE|Alu|AluSc	+	chr9	38571363	38620363	ANKRD18A|NM_147195.2	-	38571363,38575475,38577052,38577866,38586182,38588550,38593759,38595485,38601130,38603158,38607425,38610272,38611214,38615593,38615929,38620079	38572059,38575698,38577264,38578148,38586312,38588663,38593909,38596403,38601204,38603212,38607493,38610410,38611321,38615767,38616044,38620363	1.000000
stomach_female_adult_53_years	chr19	48474947	48474948	48474947	+	RAMPAGE_only	15	15	17	1.577485	3.146286	chr19	48474982	48475109	SINE|MIR|MIRc	+	chr19	48472351	48479317	STRG.62178.1	+	48472351,48473297,48473904,48474181,48474837,48478066,48478274,48478437,48479122	48472443,48473378,48474017,48474330,48474950,48478145,48478346,48478592,48479317	1.000000
stomach_female_adult_53_years	chr12	12184018	12184019	12184018	-	RAMPAGE_only	12	12	14	1.299105	3.378783	chr12	12183981	12184016	LINE|RTE-BovB|MamRTE1	-	chr12	12116028	12244304	LRP6|ENST00000538239.5	-	12116028,12120369,12121085,12124564,12125295,12126690,12130782,12131820,12135174,12138324,12147365,12148941,12150835,12158828,12159779,12162192,12164272,12165078,12179809,12181042,12183979,12186922,12203202,12244261	12119330,12120403,12121420,12124662,12125432,12126921,12130893,12132057,12135300,12138534,12147556,12149153,12151038,12159155,12159964,12162419,12164562,12165295,12179981,12181439,12184111,12187119,12203400,12244304	1.000000
stomach_female_adult_53_years	chr2	3533905	3533935	3533934	-	High_confidence	12	12	21	1.948658	3.916127	chr2	3533849	3534784	LTR|ERV1|LTR27E	+	chr2	3531983	3533782	AC108488.1|ENST00000439547.5	-	3531983,3533107,3533710	3532310,3533190,3533782	0.714286
stomach_female_adult_53_years	chr3	183911928	183911996	183911948	-	High_confidence	4209	4256	17803	1651.997606	6.203358	chr3	183911930	183912093	SINE|Alu|AluJr4	-	chr3	183911696	183912036	STRG.15901.1	-	183911696	183912036	0.977757
stomach_female_adult_53_years	chr5	176204562	176204574	176204573	-	High_confidence	15	16	31	2.876590	4.014860	chr5	176204116	176204755	LINE|L1|L1M2	-	chr5	176204326	176204532	STRG.22952.1	-	176204326	176204532	0.967742
stomach_female_adult_53_years	chr10	5017902	5017903	5017902	-	High_confidence	8	8	8	0.742346	2.750000	chr10	5017765	5018153	LTR|ERVL-MaLR|MSTA	-	chr10	5006461	5017934	AKR1C2|ENST00000604711.1	-	5006461,5007406,5010343,5017899	5006592,5007506,5010653,5017934	1.000000
stomach_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	79	79	79	7.330664	4.685888	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.987342
stomach_female_adult_53_years	chr1	223785857	223785909	223785857	-	RAMPAGE_only	3	3	13	1.206312	3.392747	chr1	223785784	223785859	LINE|L1|L1ME3Cz	+	chr1	223780644	223800726	TP53BP2|ENST00000483398.5	-	223780644,223784114,223789007,223792388,223793302,223795814,223799898,223800699	223780894,223784314,223789174,223792522,223793440,223796590,223800047,223800726	1.000000
stomach_female_adult_53_years	chr6	169689303	169689304	169689303	-	RAMPAGE_only	7	7	10	0.927932	2.846439	chr6	169689217	169689326	SINE|MIR|MIRb	+	chr6	169457354	169701586	WDR27|ENST00000423258.5	-	169457354,169582835,169602218,169613558,169632946,169634427,169636370,169638538,169643696,169647772,169649197,169651929,169658275,169659085,169659450,169660662,169662303,169664165,169665485,169672254,169688816,169701550	169457634,169582934,169602321,169613656,169633068,169634525,169636504,169638660,169643786,169647870,169649275,169652008,169658358,169659207,169659518,169660766,169662424,169664286,169665556,169672396,169689012,169701586	0.800000
stomach_female_adult_53_years	chr19	10379686	10379687	10379686	-	High_confidence	9	9	9	0.835139	2.725481	chr19	10379599	10379809	SINE|MIR|MIRb	+	chr19	10365798	10379756	STRG.60731.2	-	10365798,10366416,10368054,10368294,10378213,10379614	10365898,10366580,10368202,10368418,10378426,10379756	0.888889
stomach_female_adult_53_years	chr20	50131130	50131140	50131139	-	High_confidence	16	16	37	3.433349	4.729283	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.945946
stomach_female_adult_53_years	chr19	50272692	50272726	50272725	+	High_confidence	6	6	15	1.391898	3.240224	chr19	50272761	50272979	SINE|MIR|MIR	+	chr19	50271966	50278255	STRG.62337.1	+	50271966,50272559,50275990,50276756,50278082	50271972,50272731,50276203,50276901,50278255	0.866667
stomach_female_adult_53_years	chr10	132848642	132848698	132848651	+	High_confidence	24	28	105	9.743288	5.863559	chr10	132848295	132848877	LTR|ERV1|MER61F	+	chr10	132848643	132849033	STRG.39949.1	+	132848643	132849033	0.809524
stomach_female_adult_53_years	chr17	36510968	36510969	36510968	-	High_confidence	11	11	12	1.113519	3.277613	chr17	36510964	36511121	SINE|MIR|MIRc	-	chr17	36507422	36510853	MYO19|ENST00000615902.1	-	36507422,36507802,36508896,36510745	36507512,36507924,36509135,36510853	0.833333
stomach_female_adult_53_years	chr1	21111362	21111369	21111362	-	High_confidence	2	2	7	0.649553	2.584963	chr1	21111257	21111427	SINE|MIR|MIRb	+	chr1	20806291	21111383	EIF4G3|NM_003760.4	-	20806291,20810737,20813157,20817391,20825099,20827616,20829146,20840855,20849414,20851257,20853559,20854977,20857402,20860384,20862227,20864475,20865115,20879322,20886200,20893516,20895367,20899696,20904882,20941490,20950002,20969473,20973001,20980333,20981047,21002712,21050865,21111322	20807500,20810884,20813239,20817538,20825198,20827698,20829272,20841028,20849530,20851478,20853677,20855071,20857497,20860517,20862332,20864712,20865262,20879520,20886371,20893636,20895501,20899943,20904971,20942330,20950111,20969596,20973099,20980448,20981227,21002808,21050994,21111383	0.857143
stomach_female_adult_53_years	chr3	37987981	37987994	37987993	+	High_confidence	162	206	715	66.347149	6.234146	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988007	37999419	STRG.12515.1	+	37988007,37993586,37993897,37995738,37997076,37997482,37998089,37998265,37998911,37999338	37988238,37993732,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999419	0.795804
stomach_female_adult_53_years	chr1	19270960	19270987	19270986	-	High_confidence	5	5	11	1.020725	3.121928	chr1	19270963	19271168	SINE|Alu|AluSx	+	chr1	19270532	19271269	AKR7L|ENST00000493176.1	-	19270532,19270747	19270555,19271269	0.545455
stomach_female_adult_53_years	chr7	44074265	44074282	44074276	-	High_confidence	3	3	11	1.020725	2.913977	chr7	44074193	44074290	SINE|tRNA-RTE|MamSINE1	+	chr7	44073217	44074118	POLM|ENST00000467607.1	-	44073217,44073624,44073782	44073377,44073708,44074118	0.636364
stomach_female_adult_53_years	chr3	45034833	45034841	45034840	+	RAMPAGE_only	4	4	9	0.835139	2.725481	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	0.777778
stomach_female_adult_53_years	chr1	15565208	15565209	15565208	+	RAMPAGE_only	12	12	12	1.113519	3.251629	chr1	15565213	15565311	LINE|L2|L2b	+	chr1	15559607	15592379	DNAJC16|ENST00000483270.1	+	15559607,15560130,15562141,15563928,15564282,15565181,15565918,15566081,15567098,15567777,15568776,15574759,15575334,15592258	15559656,15560329,15562325,15564111,15564359,15565453,15565999,15566410,15567269,15568235,15568971,15575149,15575472,15592379	0.833333
stomach_female_adult_53_years	chr1	33021454	33021455	33021454	-	High_confidence	6	6	8	0.742346	2.521641	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33014364	33021690	AK2|ENST00000469238.1	-	33014364,33021366,33021592	33014594,33021461,33021690	0.625000
stomach_female_adult_53_years	chr16	2759797	2759816	2759815	+	High_confidence	12	12	28	2.598210	3.507380	chr16	2759705	2759830	LINE|L2|L2c	-	chr16	2759846	2769248	STRG.53353.6	+	2759846,2760300,2761560,2768504,2768996	2760008,2760499,2768261,2768599,2769248	0.642857
stomach_female_adult_53_years	chr19	16081438	16081454	16081453	+	High_confidence	10	11	18	1.670278	2.974938	chr19	16081397	16081692	SINE|Alu|AluSc	-	chr19	16081722	16093581	TPM4|ENST00000592138.5	+	16081722,16086422,16088026,16089044,16093535	16082046,16086540,16088097,16089120,16093581	1.000000
stomach_female_adult_53_years	chr7	107580245	107580267	107580245	+	High_confidence	183	186	754	69.966084	7.067975	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.911141
stomach_female_adult_53_years	chr9	98943543	98943576	98943575	+	High_confidence	4	4	9	0.835139	2.750000	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.888889
stomach_female_adult_53_years	chr5	147839235	147839238	147839235	-	High_confidence	5	5	15	1.391898	3.521641	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.933333
stomach_female_adult_53_years	chr17	39917430	39917431	39917430	-	High_confidence	9	9	14	1.299105	2.507380	chr17	39917413	39917823	LTR|ERV1|LTR7B	+	chr17	39904594	39917540	GSDMB|NM_018530.2	-	39904594,39905425,39905846,39906110,39908957,39909755,39912325,39917081	39904964,39905496,39905985,39906271,39909042,39909924,39912497,39917540	0.928571
stomach_female_adult_53_years	chr1	222737795	222737796	222737795	+	High_confidence	6	6	8	0.742346	2.807355	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.750000
stomach_female_adult_53_years	chr1	204116631	204116632	204116631	+	High_confidence	12	12	13	1.206312	2.792481	chr1	204116612	204116693	LINE|RTE-BovB|MamRTE1	+	chr1	204116506	204122917	SOX13|ENST00000480326.1	+	204116506,204117121,204117592,204121870,204122236,204122853	204116679,204117190,204117707,204121985,204122399,204122917	0.923077
stomach_female_adult_53_years	chr4	86453182	86453232	86453202	-	High_confidence	18	20	126	11.691945	4.993096	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.880952
stomach_female_adult_53_years	chr19	43661520	43661561	43661520	-	High_confidence	57	60	83	7.701837	5.557277	chr19	43661385	43661696	SINE|Alu|AluSz	-	chr19	43656565	43661548	PLAUR|ENST00000593396.1	-	43656565,43660973	43656640,43661548	0.975904
stomach_female_adult_53_years	chr16	20676161	20676202	20676161	-	High_confidence	4	5	14	1.299105	3.546594	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.714286
stomach_female_adult_53_years	chr3	129439736	129439764	129439763	-	High_confidence	6	6	10	0.927932	2.947703	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129437719	129439930	STRG.14784.1	-	129437719,129439729	129437950,129439930	0.800000
stomach_female_adult_53_years	chr16	15798662	15798675	15798664	-	RAMPAGE_only	32	46	79	7.330664	5.591570	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.911392
stomach_female_adult_53_years	chr20	50130095	50130102	50130098	-	RAMPAGE_only	3	4	12	1.113519	3.095795	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.916667
stomach_female_adult_53_years	chr4	119217555	119217570	119217569	+	RAMPAGE_only	6	6	10	0.927932	2.725481	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119213178	119239312	USP53|ENST00000510737.1	+	119213178,119214069,119217549,119235289,119239217	119213218,119214222,119217673,119235411,119239312	0.500000
stomach_female_adult_53_years	chr19	40205804	40205820	40205806	+	High_confidence	3	5	14	1.299105	3.521641	chr19	40205700	40205847	DNA|hAT-Tip100|MER91A	-	chr19	40206064	40209224	STRG.61767.1	+	40206064,40209102	40206157,40209224	0.500000
stomach_female_adult_53_years	chr1	39310304	39310367	39310304	+	High_confidence	10	10	36	3.340556	4.229004	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39309596	39315578	STRG.1512.1	+	39309596,39310244,39310830,39315512	39309696,39310428,39311000,39315578	0.944444
stomach_female_adult_53_years	chr12	26832726	26832798	26832797	-	High_confidence	4	4	18	1.670278	3.572431	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26716161	26832786	ITPR2|ENST00000545235.1	-	26716161,26722396,26724655,26725649,26832689	26716242,26722555,26724742,26725765,26832786	1.000000
stomach_female_adult_53_years	chr10	5023230	5023240	5023239	-	RAMPAGE_only	10	10	18	1.670278	3.454822	chr10	5023105	5023345	LTR|ERVL-MaLR|MLT1F2	-	chr10	5005994	5018031	AKR1C2|ENST00000604428.5	-	5005994,5007406,5010343,5017899	5006052,5007506,5010653,5018031	0.555556
stomach_female_adult_53_years	chr17	28695274	28695275	28695274	+	High_confidence	4	4	7	0.649553	2.521641	chr17	28695199	28695350	SINE|MIR|MIR3	+	chr17	28695352	28700227	STRG.56671.1	+	28695352,28696843,28697619,28697905,28699780,28700172	28695547,28697082,28697733,28698030,28699893,28700227	1.000000
stomach_female_adult_53_years	chr1	147172973	147172997	147172996	+	High_confidence	5	5	14	1.299105	3.324863	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.857143
stomach_female_adult_53_years	chr8	2727243	2727264	2727263	+	High_confidence	8	9	38	3.526142	4.558814	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.947368
stomach_female_adult_53_years	chr17	50737268	50737313	50737268	+	RAMPAGE_only	7	7	22	2.041451	4.152391	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50719612	50738196	STRG.57740.5	+	50719612,50736959,50737286,50738136	50719831,50737026,50737479,50738196	0.545455
stomach_female_adult_53_years	chr1	23417917	23417997	23417917	-	RAMPAGE_only	29	29	127	11.784738	5.733566	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23408559	23419236	TCEA3|ENST00000374602.2	-	23408559,23417248,23417903,23419076	23408726,23417390,23418009,23419236	0.582677
stomach_female_adult_53_years	chr9	111284841	111284875	111284874	-	High_confidence	73	74	125	11.599152	5.074610	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.936000
stomach_female_adult_53_years	chr12	46266486	46266515	46266486	-	High_confidence	4	4	15	1.391898	2.699514	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.933333
stomach_female_adult_53_years	chr3	185675967	185675975	185675967	-	High_confidence	17	17	32	2.969383	3.964735	chr3	185675957	185676235	LTR|ERVL-MaLR|MLT1L	+	chr3	185675015	185675846	IGF2BP2|ENST00000496495.1	-	185675015,185675790	185675431,185675846	0.718750
stomach_female_adult_53_years	chr20	47224579	47224607	47224606	-	RAMPAGE_only	3	3	9	0.835139	2.750000	chr20	47224599	47224686	LINE|L1|L1PA14	-	chr20	47221365	47227283	STRG.63795.1	-	47221365,47224316,47227202	47221474,47224556,47227283	0.777778
stomach_female_adult_53_years	chr6	30830624	30830641	30830627	-	High_confidence	8	13	35	3.247763	4.343289	chr6	30830591	30830730	LTR|Gypsy|MamGypLTR1b	-	chr6	30812865	30830659	LINC00243|NR_130726.1	-	30812865,30830514	30814772,30830659	0.514286
stomach_female_adult_53_years	chr11	58578102	58578133	58578102	-	High_confidence	35	35	75	6.959491	4.828471	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.773333
stomach_female_adult_53_years	chr1	89272819	89272860	89272856	-	High_confidence	10	16	55	5.103627	4.990273	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.927273
stomach_female_adult_53_years	chr17	56904481	56904542	56904518	-	High_confidence	12	12	47	4.361281	4.969274	chr17	56904513	56905129	LINE|L1|L1ME3C	+	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.872340
stomach_female_adult_53_years	chr6	37446440	37446441	37446440	+	RAMPAGE_only	6	6	8	0.742346	2.750000	chr6	37446485	37446803	LINE|CR1|L3	+	chr6	37433219	37481506	CMTR1|ENST00000373451.8	+	37433219,37435623,37443998,37446290,37450250,37451805,37453046,37453239,37458611,37459565,37461548,37461969,37462828,37471020,37471846,37472418,37473469,37474523,37475320,37476125,37477591,37478408,37479146,37480012	37433377,37435762,37444150,37446449,37450343,37451877,37453141,37453312,37458810,37459684,37461645,37462102,37463008,37471077,37471904,37472487,37473601,37474646,37475412,37476194,37477639,37478521,37479255,37481506	1.000000
stomach_female_adult_53_years	chr2	238300064	238300098	238300085	-	High_confidence	17	18	43	3.990108	4.321386	chr2	238299957	238300152	LTR|ERVL|ERV3-16A3_I-int	+	chr2	238298739	238300013	STRG.11432.1	-	238298739,238299801	238298776,238300013	0.883721
stomach_female_adult_53_years	chr9	83053771	83053808	83053771	-	High_confidence	22	22	48	4.454074	4.474643	chr9	83049539	83055571	LINE|L1|L1HS	-	chr9	83053238	83053870	STRG.34892.1	-	83053238	83053870	0.916667
stomach_female_adult_53_years	chr16	16131670	16131681	16131673	+	RAMPAGE_only	3	3	12	1.113519	2.855389	chr16	16131369	16131679	LINE|L2|L2a	-	chr16	16124809	16134507	STRG.53808.1	+	16124809,16125809,16131788,16134349	16124915,16125911,16131935,16134507	0.916667
stomach_female_adult_53_years	chr9	72363498	72363550	72363549	-	High_confidence	6	6	15	1.391898	3.521641	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.600000
stomach_female_adult_53_years	chr14	56230539	56230551	56230550	+	High_confidence	5	5	9	0.835139	3.169925	chr14	56228633	56234747	LINE|L1|L1PA5	+	chr14	56230464	56231936	STRG.49217.1	+	56230464	56231936	0.888889
stomach_female_adult_53_years	chr17	42646978	42646991	42646978	+	RAMPAGE_only	5	6	14	1.299105	3.546594	chr17	42646846	42646989	LTR|ERVL-MaLR|MLT1L	+	chr17	42648177	42648738	HMGB3P27|ENST00000589177.1	+	42648177	42648738	0.500000
stomach_female_adult_53_years	chr8	29735252	29735275	29735252	-	High_confidence	8	9	37	3.433349	4.682162	chr8	29735013	29735262	SINE|MIR|MIR	-	chr8	29673921	29735223	LINC00589|ENST00000518623.5	-	29673921,29677909,29726155,29735170	29674443,29678004,29726423,29735223	0.891892
stomach_female_adult_53_years	chr7	101217580	101217589	101217580	-	High_confidence	3	3	7	0.649553	2.584963	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.857143
stomach_female_adult_53_years	chr3	114624922	114624985	114624958	-	High_confidence	5	6	27	2.505417	4.315824	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.555556
stomach_female_adult_53_years	chr15	93863065	93863066	93863065	+	High_confidence	5	5	8	0.742346	2.521641	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.875000
stomach_female_adult_53_years	chr16	74319043	74319133	74319126	-	High_confidence	10	10	74	6.866698	5.540402	chr16	74318901	74319522	LINE|L2|L2a	+	chr16	74318626	74318967	STRG.55175.1	-	74318626	74318967	0.837838
stomach_female_adult_53_years	chr22	50204870	50204910	50204870	+	RAMPAGE_only	3	3	16	1.484691	3.323231	chr22	50204643	50205302	LINE|L1|L1MB1	+	chr22	50200978	50217615	SELENOO|ENST00000611222.1	+	50200978,50206316,50208535,50210180,50210630,50215716,50216690,50216971,50217204,50217360	50201590,50206520,50208716,50210311,50210911,50215867,50216876,50217128,50217357,50217615	0.500000
stomach_female_adult_53_years	chr15	75347037	75347040	75347037	+	High_confidence	4	4	12	1.113519	3.277613	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75346989	75355251	NEIL1|NM_024608.3	+	75346989,75348883,75352110,75352323,75352601,75353738,75354249,75354430,75354652,75354963	75347473,75349339,75352230,75352387,75352701,75353866,75354277,75354492,75354818,75355251	0.916667
stomach_female_adult_53_years	chr21	46256892	46256905	46256892	-	High_confidence	8	8	14	1.299105	3.546594	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.642857
stomach_female_adult_53_years	chr11	64807557	64807558	64807557	-	High_confidence	6	6	9	0.835139	2.500000	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64806128	64807679	STRG.41527.1	-	64806128,64807010,64807178,64807551	64806368,64807098,64807219,64807679	0.666667
stomach_female_adult_53_years	chr5	66690173	66690254	66690214	+	RAMPAGE_only	7	11	39	3.618935	3.949205	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66738030	66788705	MAST4|ENST00000478569.1	+	66738030,66759708,66783334,66788669	66738257,66759862,66783384,66788705	0.794872
stomach_female_adult_53_years	chr17	39708209	39708233	39708232	+	High_confidence	6	6	12	1.113519	3.251629	chr17	39708092	39708239	SINE|MIR|MIRc	-	chr17	39707403	39726351	ERBB2|ENST00000583038.5	+	39707403,39709317,39709812,39710085,39710339,39711927,39712321,39715285,39715445,39715739,39717319,39719786,39723318,39723537,39723911,39724725,39725048	39708534,39709452,39709881,39710201,39710481,39712047,39712448,39715359,39715536,39716605,39717480,39719834,39723457,39723660,39724010,39724911,39726351	1.000000
stomach_female_adult_53_years	chr12	91179462	91179549	91179462	-	High_confidence	700	731	2663	247.108331	7.363038	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.613218
stomach_female_adult_53_years	chr1	166850124	166850125	166850124	+	RAMPAGE_only	35	36	47	4.361281	4.910660	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
stomach_female_adult_53_years	chr8	27977120	27977126	27977125	-	RAMPAGE_only	29	39	53	4.918040	4.982453	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.735849
stomach_female_adult_53_years	chr6	133767419	133767444	133767443	-	High_confidence	4	4	10	0.927932	2.641604	chr6	133766911	133767729	LINE|L2|L2c	+	chr6	133537173	133767608	TARID|ENST00000606292.5	-	133537173,133538071,133568189,133767396	133537358,133538192,133568248,133767608	0.600000
stomach_female_adult_53_years	chr9	91342410	91342485	91342439	-	High_confidence	3	3	20	1.855864	3.892407	chr9	91342055	91342469	LTR|ERVL-MaLR|MLT1D	-	chr9	91342182	91342460	STRG.35031.1	-	91342182	91342460	0.900000
stomach_female_adult_53_years	chr1	174874382	174874439	174874418	+	High_confidence	11	11	43	3.990108	4.804058	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.906977
stomach_female_adult_53_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	6	6	15	1.391898	3.773557	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.800000
stomach_female_adult_53_years	chr19	18220642	18220643	18220642	-	High_confidence	11	11	17	1.577485	3.616875	chr19	18220627	18220753	SINE|MIR|MIR3	+	chr19	18210830	18221161	PDE4C|ENST00000539010.5	-	18210830,18211758,18213367,18216740,18218148,18218333,18218939,18219233,18220225,18220402,18221104	18211276,18211941,18213490,18216895,18218248,18218498,18219038,18219397,18220319,18220515,18221161	0.882353
stomach_female_adult_53_years	chr10	35449700	35449732	35449724	+	RAMPAGE_only	2	3	8	0.742346	2.500000	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.875000
stomach_female_adult_53_years	chr21	29077464	29077517	29077486	+	High_confidence	3	3	17	1.577485	3.500000	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.823529
stomach_female_adult_53_years	chr1	26301699	26301700	26301699	-	RAMPAGE_only	6	6	6	0.556759	2.584963	chr1	26301608	26301669	LINE|L2|L2	-	chr1	26285942	26303016	UBXN11|ENST00000442942.6	-	26285942,26294204,26296918,26297426,26297961,26301693,26302812	26286037,26294331,26296995,26297481,26298062,26301722,26303016	1.000000
stomach_female_adult_53_years	chr6	144533090	144533102	144533090	+	RAMPAGE_only	7	7	17	1.577485	3.499228	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144458813	144537711	STRG.26398.1	+	144458813,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581	144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537711	0.823529
stomach_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	100	101	106	9.836081	5.099992	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.924528
stomach_female_adult_53_years	chr22	36930296	36930297	36930296	+	RAMPAGE_only	9	9	10	0.927932	2.725481	chr22	36930052	36930305	SINE|MIR|MIRb	-	chr22	36922133	36938611	CSF2RB|ENST00000406230.5	+	36922133,36923243,36925986,36929401,36929638,36930374,36930654,36932764,36933831,36935350,36935629,36936548,36937376	36922283,36923367,36926177,36929559,36929807,36930510,36930830,36932904,36933994,36935441,36935687,36936652,36938611	0.800000
stomach_female_adult_53_years	chr7	92579322	92579323	92579322	-	RAMPAGE_only	8	8	10	0.927932	2.641604	chr7	92579142	92579278	SINE|Alu|FLAM_C	-	chr7	92565507	92577717	FAM133B|ENST00000494079.1	-	92565507,92569822,92575770,92577102,92577654	92566061,92569915,92575821,92577195,92577717	0.700000
stomach_female_adult_53_years	chr8	99891952	99892057	99892056	-	RAMPAGE_only	31	31	66	6.124352	3.924664	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
stomach_female_adult_53_years	chr5	154287469	154287470	154287469	+	High_confidence	7	7	8	0.742346	2.521641	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	0.875000
stomach_female_adult_53_years	chr2	159428356	159428357	159428356	-	RAMPAGE_only	37	42	52	4.825247	5.298184	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159405024	159431157	STRG.9703.2	-	159405024,159412334,159427940,159428310,159429199,159430862	159405114,159412545,159428042,159428419,159429260,159431157	0.538462
stomach_female_adult_53_years	chr14	81192644	81192670	81192644	-	RAMPAGE_only	11	11	27	2.505417	4.403856	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175822	81196112	STRG.49878.1	-	81175822,81185530,81192518,81196107	81180330,81185620,81192839,81196112	0.925926
stomach_female_adult_53_years	chr2	233457432	233457575	233457519	+	RAMPAGE_only	29	29	209	19.393782	5.878538	chr2	233457431	233457811	LINE|L2|L2c	-	chr2	233419240	233457817	DGKD|ENST00000490764.5	+	233419240,233434379,233434768,233435817,233436315,233437376,233438216,233441886,233445622,233446711,233448086,233448275,233449102,233449981,233450921,233451963,233454762,233456898,233457220	233419421,233434484,233434901,233435924,233436441,233437479,233438379,233441995,233445762,233446796,233448181,233448375,233449376,233450131,233451050,233452060,233454873,233456995,233457817	0.947368
stomach_female_adult_53_years	chr7	134527711	134527816	134527815	+	High_confidence	44	44	210	19.486575	6.201746	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527715	134535676	STRG.30183.3	+	134527715,134530642,134531907,134533003,134535622	134527977,134530810,134532024,134533081,134535676	0.942857
stomach_female_adult_53_years	chr1	26284525	26284576	26284538	-	RAMPAGE_only	7	7	20	1.855864	3.584184	chr1	26284514	26284630	SINE|MIR|MIR3	-	chr1	26282304	26298026	UBXN11|ENST00000496466.1	-	26282304,26282648,26282863,26284141,26284361,26285822,26294204,26296918,26297426,26297961	26282569,26282789,26282937,26284281,26285541,26286037,26294331,26296995,26297481,26298026	1.000000
stomach_female_adult_53_years	chr6	28354137	28354206	28354205	-	High_confidence	18	21	72	6.681111	5.520552	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.819444
stomach_female_adult_53_years	chr4	1241410	1241458	1241410	-	High_confidence	3	3	12	1.113519	3.084963	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1235752	1241463	CTBP1|ENST00000515690.1	-	1235752,1238182,1241324	1236316,1238337,1241463	0.500000
stomach_female_adult_53_years	chr3	132285409	132285410	132285409	-	High_confidence	16	16	18	1.670278	2.910992	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.888889
stomach_female_adult_53_years	chr18	7946878	7946898	7946878	+	High_confidence	4	4	10	0.927932	2.921928	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.900000
stomach_female_adult_53_years	chr7	100351407	100351421	100351420	+	RAMPAGE_only	4	4	9	0.835139	2.725481	chr7	100351420	100351962	LINE|L2|L2	-	chr7	100336124	100353753	STRG.29318.3	+	100336124,100338178,100338772,100345864,100349798,100351251,100352563,100353209,100353372	100336337,100338264,100338889,100345968,100349887,100352478,100353123,100353270,100353753	1.000000
stomach_female_adult_53_years	chr2	227164620	227164621	227164620	+	High_confidence	7	7	8	0.742346	2.521641	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.625000
stomach_female_adult_53_years	chr4	174297907	174297908	174297907	+	RAMPAGE_only	8	9	9	0.835139	2.500000	chr4	174297685	174298170	LINE|L1|HAL1	-	chr4	174299069	174320331	CEP44|ENST00000296519.6	+	174299069,174302038,174303702,174304246,174308688,174309849,174310782,174316165,174316529,174317334	174299210,174302186,174303849,174304369,174308859,174310056,174310858,174316290,174316567,174320331	0.888889
stomach_female_adult_53_years	chr9	94640251	94640284	94640283	-	High_confidence	6	8	16	1.484691	3.240224	chr9	94640267	94640989	LINE|L2|L2a	-	chr9	94603132	94640249	FBP1|NM_001127628.1	-	94603132,94605456,94606814,94609920,94617767,94620328,94639140,94640043	94603572,94605576,94606952,94610061,94617860,94620491,94639334,94640249	0.687500
stomach_female_adult_53_years	chr11	71480100	71480115	71480100	+	High_confidence	4	5	10	0.927932	2.921928	chr11	71479919	71480150	LINE|L1|L1MB7	-	chr11	71480148	71490876	NADSYN1|ENST00000526039.6	+	71480148,71480754,71481355,71482000,71482848,71484311,71485541,71490844	71480274,71480879,71481404,71482025,71483017,71484447,71485648,71490876	1.000000
stomach_female_adult_53_years	chr9	114394398	114394412	114394411	-	High_confidence	5	8	12	1.113519	2.751629	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	1.000000
stomach_female_adult_53_years	chr16	15740077	15740182	15740077	-	RAMPAGE_only	55	56	185	17.166745	6.772443	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.972973
stomach_female_adult_53_years	chr11	124749936	124749949	124749936	-	RAMPAGE_only	12	12	20	1.855864	3.221097	chr11	124749897	124750295	LINE|CR1|L3	-	chr11	124748105	124752193	VSIG2|ENST00000403470.1	-	124748105,124748643,124749707,124750713,124751422,124752076	124748534,124748763,124749866,124750921,124751580,124752193	0.850000
stomach_female_adult_53_years	chr7	131002295	131002296	131002295	-	RAMPAGE_only	4	4	7	0.649553	2.584963	chr7	131002039	131002345	SINE|Alu|AluSx	+	chr7	130944167	130984109	LINC-PINT|ENST00000443623.5	-	130944167,130945719,130984052	130944447,130945835,130984109	0.571429
stomach_female_adult_53_years	chr5	140655943	140655989	140655988	+	High_confidence	20	21	34	3.154969	4.418201	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140655835	140659317	STRG.22248.1	+	140655835,140657553,140658736,140658938,140659314	140655992,140657662,140658776,140659164,140659317	0.941176
stomach_female_adult_53_years	chr11	107441577	107441590	107441577	-	RAMPAGE_only	4	4	10	0.927932	2.725481	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107336565	107443026	STRG.42751.1	-	107336565,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107336713,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443026	0.900000
stomach_female_adult_53_years	chr14	81427421	81427451	81427421	-	High_confidence	3	3	12	1.113519	2.913977	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.916667
stomach_female_adult_53_years	chr6	31869609	31869713	31869712	-	High_confidence	9	9	52	4.825247	4.039908	chr6	31869703	31869997	SINE|Alu|AluY	+	chr6	31863570	31869250	STRG.24049.1	-	31863570,31864651,31864815,31865009,31865314,31865497,31865689,31865872,31869154	31863748,31864736,31864910,31865080,31865388,31865601,31865784,31866126,31869250	0.884615
stomach_female_adult_53_years	chr19	7456400	7456403	7456400	+	RAMPAGE_only	4	4	8	0.742346	2.500000	chr19	7456434	7456770	SINE|Alu|AluSz	+	chr19	7447062	7472477	ARHGEF18|ENST00000594665.1	+	7447062,7451148,7453466,7456326,7458511,7459902,7462151,7463817,7464559,7466917,7467070,7467231,7468824,7469903,7470125	7447168,7451266,7453715,7456403,7458690,7459994,7462334,7463955,7464690,7466974,7467118,7467684,7469131,7470029,7472477	1.000000
stomach_female_adult_53_years	chr1	17624220	17624221	17624220	+	RAMPAGE_only	12	12	12	1.113519	3.251629	chr1	17624115	17624252	SINE|MIR|MIR3	+	chr1	17618402	17627540	STRG.725.2	+	17618402,17619338,17621863,17622995,17624386,17625955,17627329	17618522,17619445,17621941,17623175,17624503,17626048,17627540	0.500000
stomach_female_adult_53_years	chr1	177970235	177970275	177970274	-	High_confidence	12	12	65	6.031559	4.191094	chr1	177970262	177970423	SINE|MIR|MIRb	+	chr1	177945331	177970213	SEC16B|ENST00000464631.6	-	177945331,177947824,177951913,177954278,177958131,177958839,177960341,177960790,177961589,177964170,177965046,177965892,177967682,177970189	177946531,177947942,177951995,177954376,177958362,177958975,177960403,177960942,177961734,177964279,177965167,177966005,177968039,177970213	0.969231
stomach_female_adult_53_years	chr2	164839323	164839361	164839360	+	RAMPAGE_only	9	10	35	3.247763	4.243010	chr2	164839310	164839440	SINE|Alu|AluJr	+	chr2	164840671	165094117	AC019197.1|ENST00000638199.1	+	164840671,164848841,164945583,164949934,164959254,164960898,165091119,165091829	164840822,164849402,164945671,164950133,164959329,164960967,165091299,165094117	0.514286
stomach_female_adult_53_years	chr15	37921860	37921869	37921868	+	High_confidence	5	6	9	0.835139	3.000000	chr15	37919314	37922492	LINE|L1|L1PB1	-	chr15	37921938	37936918	TMCO5A|ENST00000560841.5	+	37921938,37935256,37936313,37936846	37922203,37935348,37936463,37936918	0.777778
stomach_female_adult_53_years	chr3	132285531	132285551	132285531	-	High_confidence	6	6	12	1.113519	3.584963	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.583333
stomach_female_adult_53_years	chr16	10898595	10898596	10898595	+	High_confidence	10	10	10	0.927932	3.321928	chr16	10898556	10898648	LINE|L2|L2c	+	chr16	10898646	10908045	STRG.53585.3	+	10898646,10898921,10901513,10902657,10903730,10904743,10906498	10898732,10899002,10901558,10902801,10903895,10904812,10908045	0.500000
stomach_female_adult_53_years	chr12	7111504	7111505	7111504	+	RAMPAGE_only	30	30	32	2.969383	4.573557	chr12	7111409	7111556	SINE|Alu|AluJb	+	chr12	7108570	7121027	C1RL-AS1|ENST00000382215.3	+	7108570,7110297,7111024,7112006,7115129,7118898,7119499,7120505	7108947,7110572,7111606,7112064,7115219,7119026,7119553,7121027	0.781250
stomach_female_adult_53_years	chr2	38515502	38515503	38515502	-	High_confidence	7	7	10	0.927932	2.725481	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.700000
stomach_female_adult_53_years	chr3	69999732	69999733	69999732	+	High_confidence	4	5	7	0.649553	2.807355	chr3	69999500	70000000	LTR|ERV1|LTR1A2	+	chr3	69999732	70075385	SAMMSON|ENST00000641457.1	+	69999732,70012356,70013519,70071475,70074895	69999867,70012598,70013672,70071565,70075385	0.857143
stomach_female_adult_53_years	chr2	232816731	232816752	232816731	+	RAMPAGE_only	32	32	115	10.671220	5.466111	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.973913
stomach_female_adult_53_years	chr1	202551709	202551798	202551717	+	RAMPAGE_only	5	5	49	4.546868	5.110902	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.510204
stomach_female_adult_53_years	chr21	42347960	42347983	42347960	-	RAMPAGE_only	2	2	9	0.835139	2.500000	chr21	42347929	42347985	SINE|MIR|MIR3	+	chr21	42346421	42350994	TFF2|ENST00000475297.1	-	42346421,42347485,42349880,42350266,42350878	42346546,42347632,42350030,42350359,42350994	0.555556
stomach_female_adult_53_years	chr9	121313983	121314021	121314020	+	RAMPAGE_only	17	17	45	4.175695	4.615809	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.977778
stomach_female_adult_53_years	chr1	21875639	21875662	21875661	-	High_confidence	5	5	16	1.484691	3.452820	chr1	21875470	21875616	SINE|MIR|MIRb	-	chr1	21874477	21875208	HSPG2|ENST00000498495.1	-	21874477,21874615,21874890	21874533,21874729,21875208	0.875000
stomach_female_adult_53_years	chr19	20423697	20423704	20423697	-	RAMPAGE_only	5	5	16	1.484691	3.323231	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.875000
stomach_female_adult_53_years	chr1	172165645	172165674	172165645	+	RAMPAGE_only	3	3	7	0.649553	2.807355	chr1	172165409	172165862	LINE|L2|L2c	+	chr1	171841528	172311284	DNM3|ENST00000520906.5	+	171841528,171921747,171987655,171988944,172032401,172033104,172038318,172042008,172044384,172048611,172068818,172081831,172092823,172131174,172253572,172308727	171841817,171921821,171987805,171989148,172032500,172033265,172038461,172042144,172044452,172048750,172068905,172081902,172092875,172131288,172253682,172311284	0.571429
stomach_female_adult_53_years	chr5	1579413	1579414	1579413	-	High_confidence	7	8	8	0.742346	2.521641	chr5	1578346	1579846	LTR|ERVK|HERVK9-int	-	chr5	1574210	1579376	STRG.19674.1	-	1574210,1576178,1579276	1574295,1576309,1579376	0.750000
stomach_female_adult_53_years	chr3	69237174	69237189	69237174	-	RAMPAGE_only	2	2	8	0.742346	3.000000	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.625000
stomach_female_adult_53_years	chr8	133250622	133250623	133250622	-	RAMPAGE_only	12	12	16	1.484691	3.625000	chr8	133250581	133250664	SINE|MIR|MIRb	+	chr8	133246626	133254882	NDRG1|ENST00000521664.1	-	133246626,133247874,133248714,133250439,133254538	133246663,133247926,133248771,133250543,133254882	0.875000
stomach_female_adult_53_years	chr6	140898419	140898422	140898421	-	High_confidence	7	10	13	1.206312	3.251629	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140575787	140898381	AL035446.2|ENST00000650553.1	-	140575787,140620907,140651477,140816131,140898187	140576557,140620995,140651561,140816230,140898381	0.615385
stomach_female_adult_53_years	chr8	47360804	47360836	47360804	+	High_confidence	4	4	16	1.484691	3.139572	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47440397	SPIDR|ENST00000521918.6	+	47360818,47396375,47407860,47440322	47360949,47396626,47407961,47440397	0.812500
stomach_female_adult_53_years	chr3	37988098	37988099	37988098	+	High_confidence	56	56	81	7.516250	5.140836	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.604938
stomach_female_adult_53_years	chr22	23700730	23700737	23700730	-	RAMPAGE_only	22	22	55	5.103627	4.906981	chr22	23700074	23701270	LINE|L1|L1MA6	+	chr22	23695190	23697926	STRG.65211.4	-	23695190,23697882	23695512,23697926	0.890909
stomach_female_adult_53_years	chr1	36481534	36481535	36481534	-	RAMPAGE_only	12	12	12	1.113519	3.418296	chr1	36481405	36481665	SINE|MIR|MIR	+	chr1	36476982	36482899	CSF3R|ENST00000526980.5	-	36476982,36479432,36481477,36482810	36477677,36479516,36481537,36482899	1.000000
stomach_female_adult_53_years	chr12	106985221	106985247	106985221	-	High_confidence	10	10	16	1.484691	3.577820	chr12	106985200	106985407	LINE|L2|L2c	+	chr12	106978455	106985286	MTERF2|ENST00000550736.1	-	106978455,106980620,106985114	106978771,106980713,106985286	0.562500
stomach_female_adult_53_years	chr10	5018007	5018015	5018014	-	High_confidence	8	8	14	1.299105	2.565448	chr10	5017765	5018153	LTR|ERVL-MaLR|MSTA	-	chr10	5005994	5018031	AKR1C2|ENST00000604428.5	-	5005994,5007406,5010343,5017899	5006052,5007506,5010653,5018031	0.642857
stomach_female_adult_53_years	chr9	128114292	128114415	128114414	-	RAMPAGE_only	14	14	121	11.227979	5.189910	chr9	128114394	128114572	SINE|MIR|MIRb	+	chr9	128113377	128118432	STRG.36156.1	-	128113377,128115073,128117709,128117922	128114686,128115289,128117835,128118432	0.983471
stomach_female_adult_53_years	chr10	94923237	94923261	94923252	+	High_confidence	3	3	9	0.835139	2.750000	chr10	94922422	94923572	DNA|TcMar-Tigger|Tigger1	+	chr10	94923195	94938785	STRG.38873.2	+	94923195,94938436	94923333,94938785	0.888889
stomach_female_adult_53_years	chr10	94683469	94683508	94683483	+	High_confidence	107	107	267	24.775788	5.583792	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_001128925.1	+	94683493,94687769,94688124,94694916,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94720537,94724533,94733438,94736190	0.973783
stomach_female_adult_53_years	chr14	53217890	53217893	53217890	+	High_confidence	4	4	8	0.742346	2.500000	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217890	53369501	AL365295.1|ENST00000435322.1	+	53217890,53304807,53318030,53369454	53218055,53305053,53318138,53369501	0.875000
stomach_female_adult_53_years	chr8	143281669	143281687	143281678	-	High_confidence	4	4	17	1.577485	3.577820	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281690	MINCR|ENST00000518073.1	-	143280827,143281481	143280997,143281690	0.529412
stomach_female_adult_53_years	chr7	149264396	149264397	149264396	+	RAMPAGE_only	7	7	7	0.649553	2.521641	chr7	149264377	149264584	LINE|L2|L2	-	chr7	149262244	149267219	STRG.30492.1	+	149262244,149266334,149266818,149267096	149262357,149266730,149266945,149267219	0.714286
stomach_female_adult_53_years	chr16	30966675	30966676	30966675	+	RAMPAGE_only	4	6	7	0.649553	2.584963	chr16	30966532	30966739	SINE|MIR|MIRb	+	chr16	30957293	30984664	SETD1A|ENST00000262519.13	+	30957293,30958716,30959090,30961266,30963432,30964093,30964611,30965600,30966883,30967500,30969304,30969601,30971377,30979144,30980484,30980738,30981060,30983634,30983849	30957964,30958881,30959186,30961537,30963554,30964323,30965461,30966386,30967060,30967588,30969462,30969689,30971719,30980194,30980657,30980849,30981180,30983772,30984664	0.857143
stomach_female_adult_53_years	chr3	12662744	12662796	12662795	-	RAMPAGE_only	20	22	49	4.546868	4.912782	chr3	12662589	12662820	LINE|L2|L2c	+	chr3	12600198	12664122	STRG.11933.1	-	12600198,12604135,12606200,12608765,12609232,12611949,12618514,12663812	12600415,12604289,12606299,12608923,12609335,12612062,12618747,12664122	0.510204
stomach_female_adult_53_years	chr6	27367605	27367613	27367605	-	RAMPAGE_only	5	6	12	1.113519	3.027169	chr6	27367435	27367797	LTR|ERVL-MaLR|MSTA	-	chr6	27357822	27371525	ZNF204P|NR_002722.2	-	27357822,27363178,27367516,27370135	27360221,27363302,27367612,27371525	0.916667
stomach_female_adult_53_years	chr3	143043267	143043274	143043273	+	RAMPAGE_only	9	9	17	1.577485	3.625000	chr3	143043314	143043694	LINE|L2|L2b	+	chr3	143001622	143057653	U2SURP|ENST00000463563.6	+	143001622,143010814,143012221,143014310,143016256,143016841,143019968,143020598,143021349,143021472,143022496,143022852,143023974,143024483,143027148,143028339,143028482,143032783,143033270,143034887,143035981,143037178,143038107,143038893,143043116,143050938,143053675,143054942,143056311	143001673,143010859,143012353,143014409,143016371,143016975,143020036,143020693,143021385,143021555,143022662,143023064,143024018,143024548,143027253,143028406,143028646,143032946,143033350,143034975,143036104,143037335,143038203,143038960,143043276,143051049,143053794,143055119,143057653	0.941176
stomach_female_adult_53_years	chr19	48868595	48868617	48868595	-	High_confidence	319	333	1637	151.902493	7.083668	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.988393
stomach_female_adult_53_years	chr11	8776391	8776462	8776425	-	High_confidence	4	4	28	2.598210	4.253434	chr11	8776369	8776474	LINE|L2|L2b	-	chr11	8730980	8776679	ST5|ENST00000533016.1	-	8730980,8750620,8776191	8731209,8750725,8776679	0.964286
stomach_female_adult_53_years	chr10	73536338	73536355	73536354	-	High_confidence	4	4	8	0.742346	3.000000	chr10	73536351	73536426	LINE|L1|L1PBa	+	chr10	73529817	73536330	STRG.38285.1	-	73529817,73530142,73530703,73536268	73529911,73530523,73530835,73536330	0.875000
stomach_female_adult_53_years	chr12	91179392	91179423	91179392	-	High_confidence	3	3	13	1.206312	3.546594	chr12	91179305	91179397	SINE|MIR|MIRb	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.769231
stomach_female_adult_53_years	chr12	123390684	123390726	123390725	+	High_confidence	6	6	20	1.855864	4.037401	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123390634	123396363	STRG.46749.1	+	123390634,123395046,123396344	123390786,123395266,123396363	0.650000
stomach_female_adult_53_years	chr1	176162874	176162953	176162936	-	RAMPAGE_only	16	16	43	3.990108	4.900116	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	176116645	176206440	COP1|ENST00000491600.5	-	176116645,176135009,176136487,176149005,176162868,176163814,176168664,176175909,176184632,176206348	176116681,176135086,176136547,176149074,176162988,176163891,176168748,176176007,176184692,176206440	0.813953
stomach_female_adult_53_years	chr1	205099775	205099811	205099775	-	RAMPAGE_only	3	3	11	1.020725	2.845351	chr1	205099767	205099820	LINE|RTE-BovB|MamRTE1	-	chr1	205094875	205097380	STRG.5390.1	-	205094875,205096681,205097325	205095064,205096911,205097380	0.818182
stomach_female_adult_53_years	chr19	49086520	49086559	49086558	+	High_confidence	80	82	246	22.827131	5.625877	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.987805
stomach_female_adult_53_years	chr5	176270372	176270373	176270372	+	High_confidence	4	5	6	0.556759	2.584963	chr5	176270405	176271083	LINE|L1|L1M1	+	chr5	176270229	176290209	SIMC1|ENST00000503595.1	+	176270229,176289653	176270520,176290209	0.833333
stomach_female_adult_53_years	chr1	153967486	153967528	153967511	+	High_confidence	10	10	33	3.062176	4.248495	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.909091
stomach_female_adult_53_years	chr1	33021398	33021413	33021412	-	RAMPAGE_only	11	13	25	2.319830	3.753270	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33013214	33031546	STRG.1300.2	-	33013214,33014521,33021366,33021592,33024441,33031543	33013402,33014594,33021461,33021703,33024567,33031546	1.000000
stomach_female_adult_53_years	chr19	46350849	46350851	46350849	+	RAMPAGE_only	4	6	9	0.835139	2.750000	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.888889
stomach_female_adult_53_years	chr10	110817762	110817786	110817762	+	RAMPAGE_only	9	9	15	1.391898	3.240224	chr10	110817495	110817997	LINE|L2|L2c	-	chr10	110644396	110839469	RBM20|ENST00000369519.3	+	110644396,110780800,110783365,110784340,110784791,110797507,110799786,110810382,110812277,110820071,110821274,110823479,110831060,110835867	110644645,110781884,110783427,110784432,110784889,110797648,110799918,110810462,110812947,110820176,110821935,110823614,110831182,110839469	1.000000
stomach_female_adult_53_years	chr4	168128013	168128029	168128013	+	High_confidence	2	2	7	0.649553	2.807355	chr4	168127844	168128023	SINE|Alu|AluSx1	-	chr4	168128075	168179225	STRG.19314.1	+	168128075,168139485,168162527,168164197,168165246,168177739,168177889,168179216	168128165,168139580,168162641,168164288,168165326,168177793,168177983,168179225	1.000000
stomach_female_adult_53_years	chr1	222737760	222737761	222737760	+	High_confidence	18	18	23	2.134244	3.913977	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.782609
stomach_female_adult_53_years	chr1	2594091	2594099	2594098	-	High_confidence	4	5	12	1.113519	2.845351	chr1	2593981	2594096	SINE|MIR|MIRb	-	chr1	2592654	2594073	MMEL1|ENST00000469962.1	-	2592654,2592832,2593813	2592720,2592966,2594073	0.916667
stomach_female_adult_53_years	chr5	134613031	134613097	134613031	-	High_confidence	26	27	108	10.021667	5.434058	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.861111
stomach_female_adult_53_years	chr14	68882879	68882880	68882879	-	High_confidence	11	11	14	1.299105	2.873141	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.857143
stomach_female_adult_53_years	chr19	55069619	55069645	55069619	-	High_confidence	4	4	12	1.113519	2.918296	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55044323	55069546	RDH13|NM_138412.3	-	55044323,55047386,55048328,55048658,55056652,55059156,55064295,55069321	55045309,55047488,55048541,55048763,55056808,55059275,55064412,55069546	0.833333
stomach_female_adult_53_years	chr12	56171925	56171926	56171925	-	High_confidence	7	7	10	0.927932	2.725481	chr12	56171922	56171983	DNA|hAT-Ac|OldhAT1	+	chr12	56169780	56171940	STRG.45151.2	-	56169780,56170143,56171270,56171678	56169911,56170208,56171432,56171940	0.600000
stomach_female_adult_53_years	chr9	113582213	113582222	113582214	+	High_confidence	3	5	10	0.927932	2.646439	chr9	113582216	113582304	SINE|MIR|MIRb	+	chr9	113581635	113597737	RGS3|ENST00000487344.1	+	113581635,113591332,113594429,113594918,113595598,113596767	113584427,113591397,113594531,113594980,113595765,113597737	1.000000
stomach_female_adult_53_years	chr19	55069740	55069781	55069780	-	High_confidence	6	6	37	3.433349	4.682162	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55044323	55069546	RDH13|NM_138412.3	-	55044323,55047386,55048328,55048658,55056652,55059156,55064295,55069321	55045309,55047488,55048541,55048763,55056808,55059275,55064412,55069546	0.702703
stomach_female_adult_53_years	chr14	73463608	73463625	73463624	-	High_confidence	5	5	10	0.927932	3.169925	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73458849	73463635	AC005280.2|ENST00000647202.1	-	73458849,73462528,73463474	73459305,73462689,73463635	0.700000
stomach_female_adult_53_years	chr1	159976720	159976827	159976826	+	High_confidence	49	49	243	22.548751	4.616099	chr1	159976818	159976895	SINE|Alu|FLAM_A	+	chr1	159976830	159977102	STRG.4391.1	+	159976830	159977102	0.707819
stomach_female_adult_53_years	chr11	119046603	119046643	119046630	-	RAMPAGE_only	5	5	22	2.041451	4.152391	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	1.000000
stomach_female_adult_53_years	chrX	48683362	48683363	48683362	+	High_confidence	19	25	25	2.319830	4.213661	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.960000
stomach_female_adult_53_years	chr1	222737989	222737993	222737992	+	High_confidence	10	11	18	1.670278	3.614369	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	1.000000
stomach_female_adult_53_years	chr1	1655450	1655481	1655477	-	RAMPAGE_only	8	8	25	2.319830	3.783465	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1652391	1652601	STRG.137.1	-	1652391	1652601	0.520000
stomach_female_adult_53_years	chr19	4529205	4529301	4529300	-	RAMPAGE_only	28	28	86	7.980216	5.232902	chr19	4529288	4529435	SINE|MIR|MIRb	+	chr19	4529017	4531912	STRG.60406.3	-	4529017,4529783,4531626	4529253,4529866,4531912	0.662791
stomach_female_adult_53_years	chr6	11728452	11728453	11728452	-	High_confidence	4	4	6	0.556759	2.584963	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.666667
stomach_female_adult_53_years	chrX	5726324	5726325	5726324	-	High_confidence	13	16	18	1.670278	3.616875	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.833333
stomach_female_adult_53_years	chr11	85811011	85811012	85811011	-	High_confidence	21	21	29	2.691003	3.892725	chr11	85810837	85810962	SINE|MIR|MIR3	-	chr11	85745611	85811128	STRG.42363.1	-	85745611,85748271,85757624,85810953	85745772,85748423,85758114,85811128	0.896552
stomach_female_adult_53_years	chr22	40400702	40400703	40400702	+	RAMPAGE_only	8	8	12	1.113519	3.459432	chr22	40400675	40400747	SINE|MIR|MIR3	+	chr22	40370638	40410108	SGSM3|ENST00000485962.5	+	40370638,40400695,40401592,40402138,40404246,40404556,40405140,40405648,40406077,40406437,40407016,40407788,40408070,40408276,40408626,40408793,40408932,40409249,40409464,40409681	40370688,40400813,40401675,40402205,40404455,40404664,40405284,40405844,40406223,40406662,40407568,40407843,40408120,40408429,40408697,40408842,40409018,40409372,40409525,40410108	0.750000
stomach_female_adult_53_years	chr9	113375494	113375495	113375494	-	High_confidence	13	13	14	1.299105	3.238901	chr9	113375358	113375529	SINE|MIR|MIR3	-	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	0.928571
stomach_female_adult_53_years	chr15	57524334	57524357	57524356	+	High_confidence	3	3	9	0.835139	2.947703	chr15	57524225	57524411	SINE|MIR|MIRb	-	chr15	57524585	57543761	STRG.51713.1	+	57524585,57528653,57531689,57543695	57524751,57528815,57531779,57543761	0.666667
stomach_female_adult_53_years	chr16	4840382	4840390	4840382	-	High_confidence	3	3	9	0.835139	2.750000	chr16	4840223	4840422	LINE|CR1|X6A_LINE	-	chr16	4839243	4840334	AC020663.3|ENST00000614098.1	-	4839243	4840334	0.666667
stomach_female_adult_53_years	chr11	12195941	12195956	12195941	+	High_confidence	7	7	17	1.577485	3.572469	chr11	12195751	12196592	LINE|L2|L2	-	chr11	12195944	12208146	MICAL2|ENST00000527195.1	+	12195944,12204249,12208022	12196200,12204457,12208146	0.882353
stomach_female_adult_53_years	chr19	7642274	7642302	7642301	+	High_confidence	26	27	75	6.959491	4.898882	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.880000
stomach_female_adult_53_years	chr15	34291867	34291868	34291867	-	High_confidence	7	8	11	1.020725	3.321928	chr15	34286996	34293148	LINE|L1|L1PA7	-	chr15	34291489	34291763	STRG.50938.1	-	34291489	34291763	0.545455
stomach_female_adult_53_years	chr11	77175226	77175303	77175226	+	High_confidence	12	12	43	3.990108	4.671730	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.976744
stomach_female_adult_53_years	chr6	76774949	76774953	76774949	+	High_confidence	14	14	22	2.041451	4.011365	chr6	76774716	76775166	LTR|ERVL|MER70A	+	chr6	76774982	76775860	AL590426.2|ENST00000607287.1	+	76774982,76775167	76775075,76775860	0.772727
stomach_female_adult_53_years	chr1	212792472	212792473	212792472	-	High_confidence	5	6	8	0.742346	2.500000	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.750000
stomach_female_adult_53_years	chr7	152460665	152460677	152460665	-	RAMPAGE_only	27	27	50	4.639661	5.173661	chr7	152460557	152460804	LINE|L2|L2a	-	chr7	152265078	152436545	STRG.30667.1	-	152265078,152273704,152309965,152311797,152315137,152330600,152358586,152435625,152436511	152265209,152273867,152310075,152311946,152315338,152330739,152358675,152435787,152436545	0.800000
stomach_female_adult_53_years	chr1	1721636	1721705	1721636	-	High_confidence	38	39	110	10.207254	5.807401	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.727273
stomach_female_adult_53_years	chr19	46733283	46733305	46733304	-	High_confidence	4	4	14	1.299105	3.700440	chr19	46733275	46733512	LINE|L1|L1MC	+	chr19	46727906	46733449	STRN4|ENST00000594847.6	-	46727906,46728617,46730731,46733038	46728007,46728777,46730873,46733449	0.928571
stomach_female_adult_53_years	chr2	156254904	156254939	156254904	-	High_confidence	9	9	53	4.918040	5.232361	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156022685	156254905	LINC01876|ENST00000637476.1	-	156022685,156024469,156205381,156252035,156254777	156022817,156024607,156205438,156252131,156254905	0.679245
stomach_female_adult_53_years	chr7	99358774	99358775	99358774	+	High_confidence	14	14	15	1.391898	3.664498	chr7	99358536	99358830	SINE|Alu|AluSp	-	chr7	99358665	99366214	ARPC1A|ENST00000463009.1	+	99358665,99359544,99363542,99365890	99358775,99359738,99363633,99366214	0.866667
stomach_female_adult_53_years	chr12	132862333	132862342	132862333	-	High_confidence	3	3	6	0.556759	2.584963	chr12	132862311	132862594	SINE|Alu|AluJo	+	chr12	132859078	132861904	CHFR|ENST00000535897.1	-	132859078,132861466	132859227,132861904	1.000000
stomach_female_adult_53_years	chr6	41032708	41032715	41032714	-	High_confidence	7	7	13	1.206312	2.855389	chr6	41032476	41032772	SINE|Alu|AluSx1	+	chr6	41028372	41032987	UNC5CL|ENST00000470102.1	-	41028372,41030387,41030654,41032035,41032883	41028595,41030501,41030755,41032137,41032987	0.692308
stomach_female_adult_53_years	chr11	93499289	93499304	93499289	-	High_confidence	4	4	11	1.020725	2.663533	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	1.000000
stomach_female_adult_53_years	chr4	4269613	4269614	4269613	-	High_confidence	6	6	9	0.835139	2.947703	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	1.000000
stomach_female_adult_53_years	chr21	34512179	34512220	34512219	-	High_confidence	3	3	9	0.835139	2.725481	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	1.000000
stomach_female_adult_53_years	chr11	105842364	105842377	105842376	+	High_confidence	4	4	13	1.206312	3.084963	chr11	105842025	105842553	LINE|L2|L2a	-	chr11	105842782	105903983	GRIA4|ENST00000527687.1	+	105842782,105862023,105887518,105898268,105903813	105842912,105862208,105887572,105898427,105903983	0.769231
stomach_female_adult_53_years	chr19	43734595	43734624	43734601	-	High_confidence	5	5	21	1.948658	2.825846	chr19	43734554	43734683	DNA|hAT-Charlie|Charlie4z	-	chr19	43733423	43734825	SMG9|ENST00000598860.1	-	43733423,43733625,43734388	43733452,43733733,43734825	0.809524
stomach_female_adult_53_years	chr12	62305908	62305965	62305908	+	High_confidence	4	4	13	1.206312	3.180833	chr12	62305734	62306281	LTR|ERVL-MaLR|MLT1F	+	chr12	62305854	62355425	STRG.45319.2	+	62305854,62314789,62321463,62325871,62355330	62306058,62314916,62321609,62325933,62355425	0.615385
stomach_female_adult_53_years	chr7	100355174	100355188	100355174	+	RAMPAGE_only	3	3	8	0.742346	3.000000	chr7	100355125	100355232	LINE|L1|L1MD	-	chr7	100353735	100359014	PILRB|ENST00000431140.5	+	100353735,100355142,100356749,100358219,100358898	100354012,100355240,100356883,100358366,100359014	0.750000
stomach_female_adult_53_years	chr3	183901896	183901897	183901896	-	RAMPAGE_only	4	4	7	0.649553	2.807355	chr3	183901858	183902099	SINE|Alu|AluJb	+	chr3	183896048	183904298	CYP2AB1P|ENST00000439115.1	-	183896048,183896214,183898120,183899414,183904194	183896117,183896356,183898435,183899474,183904298	0.571429
stomach_female_adult_53_years	chr19	20321287	20321308	20321287	-	High_confidence	2	3	10	0.927932	2.921928	chr19	20320046	20321730	LTR|ERVK|HERVK14-int	-	chr19	20125418	20321305	AC011447.3|ENST00000593655.5	-	20125418,20132460,20240499,20301308,20321185	20125509,20132587,20240637,20301387,20321305	0.600000
stomach_female_adult_53_years	chr17	81845344	81845357	81845356	-	High_confidence	5	5	14	1.299105	2.753434	chr17	81845321	81845418	SINE|Alu|AluJo	+	chr17	81843491	81845456	P4HB|ENST00000473021.1	-	81843491,81845143	81844092,81845456	1.000000
stomach_female_adult_53_years	chr1	29166059	29166072	29166071	-	RAMPAGE_only	15	15	25	2.319830	3.703465	chr1	29165912	29166153	SINE|tRNA-RTE|MamSINE1	-	chr1	29154696	29160563	SRSF4|ENST00000497015.5	-	29154696,29159373,29160374	29154910,29159486,29160563	0.680000
stomach_female_adult_53_years	chr1	3831048	3831052	3831048	-	High_confidence	4	4	10	0.927932	3.121928	chr1	3830948	3831012	LINE|L2|L2a	-	chr1	3829691	3831224	CEP104|ENST00000495701.1	-	3829691,3831045	3829997,3831224	0.600000
stomach_female_adult_53_years	chr7	64990025	64990026	64990025	-	RAMPAGE_only	15	15	16	1.484691	3.506891	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.812500
stomach_female_adult_53_years	chrX	73837439	73837451	73837439	-	RAMPAGE_only	10	10	19	1.763071	3.246899	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
stomach_female_adult_53_years	chr1	159937218	159937229	159937218	-	RAMPAGE_only	4	4	8	0.742346	2.521641	chr1	159937165	159937358	SINE|MIR|MIRc	+	chr1	159927038	159945593	IGSF9|ENST00000476102.1	-	159927038,159927759,159928157,159929350,159929637,159929890,159930188,159930691,159931452,159931811,159932511,159934189,159934424,159934680,159936398,159936753,159937685,159942962,159943396,159945572	159927526,159927887,159929018,159929393,159929785,159929975,159930439,159930867,159931603,159931928,159932652,159934332,159934570,159934822,159936516,159936908,159937838,159943151,159943628,159945593	0.750000
stomach_female_adult_53_years	chr12	7115158	7115173	7115172	+	RAMPAGE_only	14	14	24	2.227037	4.053509	chr12	7114990	7115194	LINE|L2|L2b	+	chr12	7108307	7121851	C1RL-AS1|NR_026947.1	+	7108307,7108672,7110063,7110297,7111024,7112006,7115129,7115385,7118898,7119499,7120505,7121711	7108481,7108947,7110147,7110572,7111606,7112064,7115219,7118677,7119026,7119553,7120625,7121851	0.791667
stomach_female_adult_53_years	chr3	155646948	155646984	155646974	-	RAMPAGE_only	17	23	41	3.804522	3.556865	chr3	155646900	155647041	LTR|ERVL-MaLR|MLT1F1	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	1.000000
stomach_female_adult_53_years	chr3	52615423	52615438	52615423	-	High_confidence	3	3	8	0.742346	2.521641	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.875000
stomach_female_adult_53_years	chr19	58306086	58306116	58306115	+	High_confidence	7	9	14	1.299105	3.235926	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58306634	ERVK3-1|ENST00000434052.5	+	58305376,58306087	58305445,58306634	0.714286
stomach_female_adult_53_years	chr11	3380960	3380961	3380960	+	High_confidence	28	29	29	2.691003	3.583617	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3409148	TSSC2|NR_024248.1	+	3380960,3383461,3384166,3401758,3402612,3402914,3403592,3404853,3406498,3407621,3408685	3381044,3383546,3384284,3401867,3402729,3402952,3403652,3404963,3406715,3407697,3409148	0.620690
stomach_female_adult_53_years	chr9	98110116	98110123	98110116	-	High_confidence	4	5	14	1.299105	2.753434	chr9	98110049	98110173	SINE|MIR|MIR3	-	chr9	98099961	98110212	STRG.35339.1	-	98099961,98109888,98110068	98100164,98109984,98110212	0.642857
stomach_female_adult_53_years	chr16	71739395	71739396	71739395	-	RAMPAGE_only	8	8	10	0.927932	2.646439	chr16	71739374	71739546	LINE|L1|L1ME3C	+	chr16	71731882	71747396	AP1G1|ENST00000564155.5	-	71731882,71734608,71738941,71739233,71745143,71745472,71746587	71733159,71734707,71739102,71739341,71745270,71745614,71747396	0.700000
stomach_female_adult_53_years	chr3	183898160	183898189	183898188	-	RAMPAGE_only	5	5	12	1.113519	3.022055	chr3	183897856	183898592	LINE|RTE-X|L4_C_Mam	+	chr3	183896048	183904298	CYP2AB1P|ENST00000439115.1	-	183896048,183896214,183898120,183899414,183904194	183896117,183896356,183898435,183899474,183904298	0.750000
stomach_female_adult_53_years	chr11	96387582	96387605	96387583	-	High_confidence	2	3	8	0.742346	2.521641	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	0.875000
stomach_female_adult_53_years	chr1	155954937	155954938	155954937	-	RAMPAGE_only	6	6	6	0.556759	2.584963	chr1	155954717	155954897	LINE|L1|L1ME4b	-	chr1	155952731	155962623	ARHGEF2|ENST00000474428.6	-	155952731,155957712,155958319,155961660,155962104,155962592	155952828,155957882,155958396,155961909,155962222,155962623	0.666667
stomach_female_adult_53_years	chr1	42480540	42480554	42480540	+	RAMPAGE_only	4	4	8	0.742346	2.750000	chr1	42480468	42480584	SINE|Alu|AluJb	-	chr1	42482655	42654181	CCDC30|ENST00000428554.6	+	42482655,42490157,42497097,42498817,42534888,42536475,42539172,42545409,42556155,42566295,42577019,42581359,42589320,42610977,42637236,42642472,42644692,42646134,42653375,42653817	42482816,42490229,42497213,42498916,42534989,42536601,42539310,42545579,42556405,42566475,42577229,42581514,42589483,42611090,42637378,42642609,42644807,42646317,42653443,42654181	1.000000
stomach_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	184	208	533	49.458784	6.036198	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.954972
stomach_female_adult_53_years	chrX	53634365	53634402	53634365	-	RAMPAGE_only	4	5	17	1.577485	2.780639	chrX	53634324	53634391	SINE|Alu|AluJb	+	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.941176
stomach_female_adult_53_years	chr12	7111558	7111559	7111558	+	RAMPAGE_only	7	7	7	0.649553	2.521641	chr12	7111556	7111739	LINE|L1|L1MEf	+	chr12	7108307	7121851	C1RL-AS1|NR_026947.1	+	7108307,7108672,7110063,7110297,7111024,7112006,7115129,7115385,7118898,7119499,7120505,7121711	7108481,7108947,7110147,7110572,7111606,7112064,7115219,7118677,7119026,7119553,7120625,7121851	1.000000
stomach_female_adult_53_years	chr2	240022210	240022216	240022215	-	RAMPAGE_only	8	8	14	1.299105	3.392747	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.928571
stomach_female_adult_53_years	chr2	229232040	229232054	229232040	-	High_confidence	10	10	31	2.876590	4.349192	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.741935
stomach_female_adult_53_years	chr7	30568912	30568913	30568912	-	High_confidence	16	16	23	2.134244	3.969002	chr7	30568321	30569340	LTR|ERV1|MER4-int	+	chr7	30563779	30568894	STRG.27776.1	-	30563779,30568832	30563998,30568894	0.652174
stomach_female_adult_53_years	chr13	77288430	77288431	77288430	-	RAMPAGE_only	13	13	15	1.391898	2.739572	chr13	77288428	77288556	SINE|MIR|MIRc	-	chr13	77273513	77326659	STRG.47999.1	-	77273513,77278757,77288160,77296598,77326473	77273668,77278911,77288376,77296674,77326659	1.000000
stomach_female_adult_53_years	chr19	5680226	5680249	5680226	-	High_confidence	3	3	10	0.927932	2.725481	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.800000
stomach_female_adult_53_years	chr6	11728589	11728590	11728589	-	High_confidence	8	8	12	1.113519	3.418296	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.666667
stomach_female_adult_53_years	chr6	56785842	56785868	56785867	-	High_confidence	7	7	12	1.113519	2.913977	chr6	56779724	56785868	LINE|L1|L1PA3	-	chr6	56670674	56785879	DST|ENST00000522538.5	-	56670674,56699652,56701887,56704279,56735227,56785770	56670807,56699745,56701965,56704369,56735289,56785879	0.666667
stomach_female_adult_53_years	chr6	83976634	83976659	83976652	+	RAMPAGE_only	4	4	13	1.206312	3.251629	chr6	83976445	83976821	LTR|ERV1|MER4-int	-	chr6	83977660	83983598	STRG.25266.1	+	83977660,83983266	83977851,83983598	0.692308
stomach_female_adult_53_years	chr16	11774361	11774393	11774361	-	High_confidence	4	4	14	1.299105	3.664498	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	1.000000
stomach_female_adult_53_years	chr1	1655378	1655410	1655409	-	RAMPAGE_only	19	21	60	5.567593	5.348394	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.600000
stomach_female_adult_53_years	chr1	183130868	183130882	183130868	+	RAMPAGE_only	2	2	7	0.649553	2.584963	chr1	183130892	183131190	SINE|Alu|AluSp	+	chr1	183128595	183133538	LAMC1|ENST00000478064.1	+	183128595,183130343,183131298,183132399,183133405	183128820,183130549,183131378,183132537,183133538	0.571429
stomach_female_adult_53_years	chr17	50737432	50737469	50737468	+	High_confidence	5	5	9	0.835139	2.750000	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50736634	50741673	LUC7L3|ENST00000513025.2	+	50736634,50740305,50741101,50741656	50737026,50740345,50741246,50741673	0.555556
stomach_female_adult_53_years	chr2	38083051	38083078	38083053	+	High_confidence	4	6	16	1.484691	3.640224	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.812500
stomach_female_adult_53_years	chr11	64807610	64807620	64807612	-	High_confidence	3	4	8	0.742346	2.807355	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64806128	64807679	STRG.41527.1	-	64806128,64807010,64807178,64807551	64806368,64807098,64807219,64807679	0.750000
stomach_female_adult_53_years	chr16	8842153	8842179	8842153	+	High_confidence	6	6	13	1.206312	2.968919	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.923077
stomach_female_adult_53_years	chr3	46606947	46606950	46606947	-	RAMPAGE_only	6	6	12	1.113519	3.027169	chr3	46606755	46606914	LTR|ERVL-MaLR|MLT1L	-	chr3	46518348	46580099	LRRC2|ENST00000296144.3	-	46518348,46521521,46527425,46529904,46532772,46539044,46545045,46551466,46579936	46519063,46521658,46527581,46530050,46532909,46539201,46545253,46551610,46580099	0.750000
stomach_female_adult_53_years	chr8	30812418	30812454	30812453	-	High_confidence	11	11	25	2.319830	4.220176	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.840000
stomach_female_adult_53_years	chr14	73366897	73366926	73366925	-	High_confidence	4	4	11	1.020725	3.277613	chr14	73366875	73367023	SINE|MIR|MIRb	+	chr14	73276548	73366920	NUMB|ENST00000560335.5	-	73276548,73282358,73287109,73292733,73297210,73316389,73323129,73355625,73366896	73277293,73282505,73287314,73292874,73297285,73316422,73323204,73355766,73366920	0.818182
stomach_female_adult_53_years	chr5	82279590	82279591	82279590	+	High_confidence	9	9	10	0.927932	2.725481	chr5	82279305	82279599	LINE|L2|L2a	-	chr5	82279461	82318803	ATP6AP1L|ENST00000380167.8	+	82279461,82280959,82295492,82303486,82303773,82304614,82304933,82310156,82312610,82317997	82279878,82281011,82295544,82303527,82303832,82304850,82305481,82310207,82312851,82318803	0.700000
stomach_female_adult_53_years	chr1	97904654	97904655	97904654	-	RAMPAGE_only	4	4	7	0.649553	2.521641	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.571429
stomach_female_adult_53_years	chr2	69763020	69763023	69763020	+	High_confidence	5	5	10	0.927932	2.947703	chr2	69762904	69763071	LINE|L1|L1M6	-	chr2	69763035	69820821	STRG.8069.1	+	69763035,69781519,69788053,69804532,69806384,69807905,69812652,69816100,69818598,69819279,69820698	69763076,69781574,69788141,69804627,69806498,69810673,69812709,69816194,69818694,69819338,69820821	0.500000
stomach_female_adult_53_years	chr7	128903367	128903390	128903389	-	High_confidence	3	3	11	1.020725	2.845351	chr7	128903088	128903463	LINE|L2|L2b	+	chr7	128889946	128903352	KCP|ENST00000616669.4	-	128889946,128890904,128891184,128891450,128891645,128892513,128892687,128892868,128893237,128893390,128893805,128894199,128902776,128903163	128890513,128891096,128891278,128891533,128891819,128892607,128892794,128893021,128893319,128893476,128894055,128894293,128902859,128903352	0.818182
stomach_female_adult_53_years	chr12	12927733	12927741	12927733	+	High_confidence	20	20	35	3.247763	4.734522	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.542857
stomach_female_adult_53_years	chr18	47895426	47895435	47895434	-	High_confidence	9	9	19	1.763071	3.308271	chr18	47894885	47895593	LINE|L2|L2a	+	chr18	47869421	47895725	SMAD2|ENST00000586487.2	-	47869421,47870474,47895266	47869436,47870564,47895725	0.842105
stomach_female_adult_53_years	chr7	158863386	158863402	158863386	+	RAMPAGE_only	4	4	13	1.206312	3.022055	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.846154
stomach_female_adult_53_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	7	7	7	0.649553	2.807355	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
stomach_female_adult_53_years	chr20	37744603	37744621	37744608	+	High_confidence	6	6	28	2.598210	4.356558	chr20	37744532	37744694	DNA|hAT-Charlie|MER117	+	chr20	37744644	37872129	CTNNBL1|ENST00000373473.5	+	37744644,37746467,37765196,37767952,37777344,37777653,37779186,37802866,37840101,37842338,37859898,37860271,37871924	37744713,37746647,37765290,37768044,37777417,37777712,37779335,37803048,37840199,37842419,37860036,37860344,37872129	0.892857
stomach_female_adult_53_years	chr22	41254629	41254674	41254673	-	RAMPAGE_only	8	8	29	2.691003	4.116265	chr22	41254664	41254690	LINE|L2|L2c	-	chr22	41251074	41256104	STRG.65938.1	-	41251074,41252871,41254307,41256020	41251109,41252991,41254494,41256104	0.965517
stomach_female_adult_53_years	chr7	100349884	100349885	100349884	+	RAMPAGE_only	47	47	53	4.918040	4.269548	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100351255	100358292	STAG3L5P-PVRIG2P-PILRB|ENST00000472646.1	+	100351255,100353919,100355142,100356749,100358219	100351410,100354012,100355240,100356883,100358292	0.528302
stomach_female_adult_53_years	chr2	39453867	39453882	39453881	+	High_confidence	8	9	18	1.670278	3.969816	chr2	39453626	39453953	SINE|Alu|AluJo	-	chr2	39453921	39624356	AC007388.1|ENST00000446698.5	+	39453921,39454296,39516413,39518582,39624098	39453931,39454365,39516541,39518710,39624356	0.611111
stomach_female_adult_53_years	chr13	30376944	30376954	30376953	-	High_confidence	3	3	7	0.649553	2.584963	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30374002	30376964	LINC00426|ENST00000416261.1	-	30374002,30375466,30376826	30374093,30375776,30376964	0.571429
stomach_female_adult_53_years	chrX	53585017	53585018	53585017	-	RAMPAGE_only	10	11	14	1.299105	3.238901	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53583746	53594593	STRG.67184.2	-	53583746,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498	53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594593	0.857143
stomach_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	306	350	555	51.500234	5.692694	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.969369
stomach_female_adult_53_years	chr3	100291299	100291300	100291299	+	High_confidence	13	13	13	1.206312	3.392747	chr3	100291300	100291598	SINE|Alu|AluSz	+	chr3	100291305	100291515	STRG.13990.1	+	100291305	100291515	0.923077
stomach_female_adult_53_years	chr12	109053947	109053957	109053951	-	High_confidence	6	6	25	2.319830	4.229871	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.520000
stomach_female_adult_53_years	chr7	130959983	130960016	130959983	-	RAMPAGE_only	2	2	11	1.020725	2.921928	chr7	130959691	130959991	SINE|Alu|AluSx	+	chr7	130944165	131106356	LINC-PINT|ENST00000646429.1	-	130944165,130945719,130959868,130984052,131052424,131106270	130944889,130945835,130959970,130984109,131052555,131106356	0.545455
stomach_female_adult_53_years	chr21	37084061	37084187	37084067	+	High_confidence	7	7	43	3.990108	4.945772	chr21	37083879	37084118	DNA|hAT-Charlie|MER113B	+	chr21	37083625	37093402	TTC3|ENST00000484047.5	+	37083625,37087246,37087832,37088798,37090232,37091292,37093308	37084331,37087401,37088346,37088886,37090286,37091626,37093402	0.953488
stomach_female_adult_53_years	chr11	3477051	3477073	3477072	-	High_confidence	6	7	19	1.763071	3.721612	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3476049	3476387	STRG.40097.1	-	3476049	3476387	0.789474
stomach_female_adult_53_years	chr1	16951007	16951023	16951007	+	RAMPAGE_only	3	3	8	0.742346	2.807355	chr1	16950976	16951061	DNA|hAT-Ac|OldhAT1	+	chr1	16953156	16954781	CROCC|ENST00000497654.2	+	16953156,16954222,16954733	16953481,16954357,16954781	0.750000
stomach_female_adult_53_years	chr7	139575338	139575346	139575345	-	RAMPAGE_only	4	4	11	1.020725	2.732159	chr7	139575341	139575388	LINE|RTE-BovB|MamRTE1	+	chr7	139573291	139614486	STRG.30288.2	-	139573291,139575127,139583816,139596716,139600416,139604080,139613201,139614285	139573397,139575288,139584064,139596998,139600596,139604223,139613323,139614486	0.909091
stomach_female_adult_53_years	chr1	109725827	109725828	109725827	+	High_confidence	87	87	100	9.279321	5.469624	chr1	109725516	109725947	LTR|ERVK|LTR3	+	chr1	109725819	109775252	AL158847.1|ENST00000431955.1	+	109725819,109732174,109736939,109775071	109726068,109732350,109737141,109775252	0.780000
stomach_female_adult_53_years	chr7	99208117	99208119	99208118	-	High_confidence	4	7	10	0.927932	2.947703	chr7	99208098	99208244	SINE|Alu|AluSx3	-	chr7	99173573	99207506	KPNA7|ENST00000327442.6	-	99173573,99177919,99181882,99184928,99188299,99193018,99195069,99196083,99203105,99207400	99173794,99178066,99182065,99185162,99188563,99193101,99195338,99196166,99203240,99207506	0.900000
stomach_female_adult_53_years	chr2	55618850	55618852	55618850	-	High_confidence	4	5	8	0.742346	2.521641	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.750000
stomach_female_adult_53_years	chr3	129559620	129559621	129559620	-	High_confidence	7	7	7	0.649553	2.807355	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	1.000000
stomach_female_adult_53_years	chr6	36757385	36757400	36757399	-	High_confidence	16	17	40	3.711729	4.616349	chr6	36757386	36757542	SINE|MIR|MIRc	-	chr6	36754232	36757400	CPNE5|ENST00000634222.1	-	36754232,36757284	36756298,36757400	0.825000
stomach_female_adult_53_years	chr6	79631273	79631442	79631302	+	High_confidence	98	98	436	40.457842	6.454433	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.986239
stomach_female_adult_53_years	chr16	63618045	63618046	63618045	-	High_confidence	9	11	11	1.020725	3.277613	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.909091
stomach_female_adult_53_years	chr1	204434328	204434452	204434328	-	High_confidence	22	22	93	8.629769	5.700029	chr1	204434159	204434282	LINE|CR1|L3b	-	chr1	204433268	204434263	STRG.5365.1	-	204433268,204433792	204433425,204434263	0.741935
stomach_female_adult_53_years	chr7	99660195	99660207	99660195	-	RAMPAGE_only	7	7	15	1.391898	3.323231	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99658832	99663582	CYP3A5|ENST00000473347.1	-	99658832,99662815	99660659,99663582	0.933333
stomach_female_adult_53_years	chr9	68975832	68975848	68975845	-	High_confidence	3	3	12	1.113519	3.277613	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.750000
stomach_female_adult_53_years	chr16	67183295	67183313	67183295	-	High_confidence	5	6	9	0.835139	2.947703	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67176729	67183941	KIAA0895L|ENST00000563902.1	-	67176729,67178009,67178198,67179429,67179814,67180040,67183261	67176975,67178107,67178504,67179562,67179958,67180666,67183941	0.555556
stomach_female_adult_53_years	chr4	1241509	1241534	1241509	-	High_confidence	2	2	8	0.742346	2.500000	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1235752	1241463	CTBP1|ENST00000515690.1	-	1235752,1238182,1241324	1236316,1238337,1241463	0.875000
stomach_female_adult_53_years	chr17	79919418	79919431	79919430	+	High_confidence	4	4	9	0.835139	3.000000	chr17	79919404	79919492	SINE|MIR|MIR3	-	chr17	79919373	79925462	LINC01978|ENST00000572353.1	+	79919373,79925125	79919576,79925462	0.555556
stomach_female_adult_53_years	chr19	54617130	54617148	54617130	+	High_confidence	7	10	21	1.948658	4.021928	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.952381
stomach_female_adult_53_years	chr13	59708596	59708640	59708599	-	RAMPAGE_only	12	13	54	5.010834	5.171373	chr13	59708300	59708705	LINE|L2|L2-3_Crp	+	chr13	59665691	59751021	DIAPH3|ENST00000649952.1	-	59665691,59750838	59666846,59751021	0.555556
stomach_female_adult_53_years	chr3	40761507	40761508	40761507	+	High_confidence	5	6	6	0.556759	2.584963	chr3	40760007	40761508	LINE|L1|L1MA2	+	chr3	40761544	40761799	AC099560.2|ENST00000457554.1	+	40761544	40761799	0.833333
stomach_female_adult_53_years	chr16	67183549	67183575	67183549	-	High_confidence	24	24	45	4.175695	4.723874	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67176729	67183941	KIAA0895L|ENST00000563902.1	-	67176729,67178009,67178198,67179429,67179814,67180040,67183261	67176975,67178107,67178504,67179562,67179958,67180666,67183941	0.533333
stomach_female_adult_53_years	chr12	13376665	13376714	13376665	-	High_confidence	5	5	27	2.505417	4.458591	chr12	13376413	13376888	LTR|ERVL|MLT2B1	-	chr12	13374797	13376675	LINC01559|ENST00000539026.1	-	13374797,13376223,13376513	13375006,13376425,13376675	0.555556
stomach_female_adult_53_years	chr17	49646471	49646501	49646500	-	High_confidence	9	13	44	4.082901	4.454766	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.863636
stomach_female_adult_53_years	chr15	22566296	22566302	22566296	+	RAMPAGE_only	4	4	8	0.742346	2.521641	chr15	22566189	22566330	DNA|TcMar-Tigger|MER2	-	chr15	22547895	22573463	STRG.50634.1	+	22547895,22554384,22556011,22556909,22559788,22560787,22561558,22562948,22564388,22566304,22569148,22572909,22573278	22548072,22554572,22556204,22557092,22559970,22561454,22561789,22563087,22564532,22566362,22569291,22573181,22573463	0.875000
stomach_female_adult_53_years	chr19	45524103	45524131	45524130	+	RAMPAGE_only	7	8	18	1.670278	3.337175	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.777778
stomach_female_adult_53_years	chr16	69996417	69996421	69996417	-	RAMPAGE_only	10	10	19	1.763071	3.576618	chr16	69996297	69996477	SINE|MIR|MIRb	+	chr16	69993019	70021930	PDXDC2P-NPIPB14P|ENST00000525331.5	-	69993019,69996068,69996389,70010750,70011840,70014103,70018046,70021823	69993248,69996226,69996468,70010856,70011929,70014167,70018097,70021930	1.000000
stomach_female_adult_53_years	chr20	35605279	35605326	35605325	-	High_confidence	15	16	52	4.825247	5.003042	chr20	35605067	35605498	LINE|L2|L2c	+	chr20	35600698	35605326	FER1L4|ENST00000325076.9	-	35600698,35601531,35601805,35603009,35603258,35603796,35604303,35604529,35605101	35600924,35601718,35602751,35603141,35603319,35603967,35604345,35604621,35605326	0.769231
stomach_female_adult_53_years	chr16	2759925	2760062	2760017	+	High_confidence	18	20	87	8.073010	5.151880	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	0.965517
stomach_female_adult_53_years	chr17	31233211	31233212	31233211	+	High_confidence	8	8	9	0.835139	2.500000	chr17	31233237	31233291	LINE|L2|L2a	+	chr17	31233029	31261794	NF1|ENST00000479614.1	+	31233029,31235610,31235917,31248983,31257686,31258343,31259031,31260368,31261710	31233213,31235772,31236021,31249119,31257726,31258502,31259129,31260515,31261794	0.888889
stomach_female_adult_53_years	chr3	56613488	56613528	56613488	+	RAMPAGE_only	6	6	13	1.206312	3.022055	chr3	56612103	56613539	LINE|L1|L1MA4A	-	chr3	56593711	56615417	CCDC66|ENST00000468108.1	+	56593711,56593943,56613588,56615127	56593741,56594028,56613750,56615417	0.923077
stomach_female_adult_53_years	chr19	45823822	45823823	45823822	-	RAMPAGE_only	10	10	13	1.206312	3.251629	chr19	45823777	45823871	LINE|RTE-BovB|MamRTE1	-	chr19	45819123	45821467	STRG.62060.1	-	45819123	45821467	0.615385
stomach_female_adult_53_years	chr15	34400724	34400751	34400747	-	RAMPAGE_only	3	3	10	0.927932	2.721928	chr15	34400639	34400739	LINE|CR1|L3	-	chr15	34379067	34407687	GOLGA8A|ENST00000473125.5	-	34379067,34381700,34381967,34382150,34382385,34382796,34383440,34383745,34383960,34385047,34385253,34385426,34385739,34386624,34389643,34391122,34391352,34398633,34399154,34400711,34404916,34406673,34407523	34381613,34381856,34382068,34382251,34382529,34383053,34383528,34383853,34384047,34385157,34385338,34385474,34385778,34387952,34389768,34391265,34391426,34398729,34399203,34400759,34405055,34406870,34407687	1.000000
stomach_female_adult_53_years	chr2	229586860	229586916	229586860	-	High_confidence	6	8	38	3.526142	4.337435	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229580153	229587177	DNER|ENST00000482831.1	-	229580153,229585857,229586693	229580344,229586024,229587177	0.657895
stomach_female_adult_53_years	chr11	123060124	123060175	123060156	-	High_confidence	5	5	16	1.484691	3.506891	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	0.937500
stomach_female_adult_53_years	chr15	92914930	92914960	92914950	+	High_confidence	8	8	31	2.876590	4.281728	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.903226
stomach_female_adult_53_years	chr18	54945458	54945459	54945458	-	High_confidence	7	7	10	0.927932	2.725481	chr18	54945305	54945474	SINE|MIR|MIRc	-	chr18	54917912	54945419	STRG.59771.1	-	54917912,54919270,54928799,54934819,54936832,54937956,54940996,54942674,54945387	54917996,54919376,54928882,54934948,54936958,54938097,54941083,54942803,54945419	0.900000
stomach_female_adult_53_years	chr1	108939644	108939645	108939644	-	RAMPAGE_only	6	6	6	0.556759	2.584963	chr1	108939309	108939608	SINE|Alu|AluY	-	chr1	108929507	108950448	CLCC1|NM_001278202.1	-	108929507,108934624,108937076,108939635,108940044,108941404,108947610,108949819,108950308	108932501,108934942,108937418,108939782,108940142,108941498,108947718,108949921,108950448	1.000000
stomach_female_adult_53_years	chr17	16071714	16071715	16071714	-	RAMPAGE_only	9	9	9	0.835139	2.947703	chr17	16071667	16071790	LINE|L1|L1MB3	+	chr17	16046899	16080513	NCOR1|ENST00000458113.6	-	16046899,16048844,16057513,16057906,16058470,16061400,16062104,16064067,16064869,16065484,16067893,16070164,16071408,16072144,16073428,16075533,16079963,16080350	16047093,16048988,16057737,16058064,16058599,16061894,16062270,16064187,16065019,16065691,16068121,16070525,16071665,16072228,16073569,16075702,16080064,16080513	1.000000
stomach_female_adult_53_years	chr10	5023306	5023322	5023306	-	RAMPAGE_only	2	2	7	0.649553	2.584963	chr10	5023105	5023345	LTR|ERVL-MaLR|MLT1F2	-	chr10	5006461	5017934	AKR1C2|ENST00000604711.1	-	5006461,5007406,5010343,5017899	5006592,5007506,5010653,5017934	0.571429
stomach_female_adult_53_years	chr6	43502209	43502212	43502209	+	High_confidence	4	4	8	0.742346	2.750000	chr6	43502114	43502254	SINE|MIR|MIR3	-	chr6	43501525	43506553	TJAP1|ENST00000454762.1	+	43501525,43502282,43503400,43503622	43501687,43502349,43503508,43506553	1.000000
stomach_female_adult_53_years	chr14	22909619	22909659	22909619	-	RAMPAGE_only	5	5	17	1.577485	3.454822	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22906027	22919110	RBM23|ENST00000554955.5	-	22906027,22908332,22909482,22911327,22918998	22906368,22908380,22909595,22911403,22919110	0.647059
stomach_female_adult_53_years	chr14	102235458	102235481	102235458	-	High_confidence	14	14	30	2.783796	3.797468	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.933333
stomach_female_adult_53_years	chr1	222737833	222737950	222737907	+	High_confidence	11	11	66	6.124352	5.138721	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.878788
stomach_female_adult_53_years	chr19	58312155	58312184	58312155	+	RAMPAGE_only	3	3	12	1.113519	3.188722	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	1.000000
stomach_female_adult_53_years	chr20	38985964	38985988	38985964	+	RAMPAGE_only	4	4	11	1.020725	3.095795	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.818182
stomach_female_adult_53_years	chr17	50737339	50737391	50737390	+	RAMPAGE_only	2	2	8	0.742346	3.000000	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50719598	50743792	LUC7L3|ENST00000504563.6	+	50719598,50736959,50737286,50740305,50741101,50741656,50743705	50719831,50737026,50737479,50740345,50741246,50741731,50743792	0.500000
stomach_female_adult_53_years	chr2	128173737	128173738	128173737	+	High_confidence	4	4	7	0.649553	2.584963	chr2	128173483	128173742	LINE|L1|L1ME1	-	chr2	128173785	128174831	STRG.9241.1	+	128173785,128174772	128173939,128174831	0.857143
stomach_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	19	19	19	1.763071	3.405822	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
stomach_female_adult_53_years	chr2	206161433	206161466	206161454	+	High_confidence	3	3	15	1.391898	3.506891	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	1.000000
stomach_female_adult_53_years	chr16	89549592	89549619	89549592	+	RAMPAGE_only	5	5	14	1.299105	3.546594	chr16	89549377	89549680	SINE|Alu|AluJr	+	chr16	89548158	89557762	SPG7|ENST00000561702.6	+	89548158,89552978,89553793,89554485,89556886	89550609,89553135,89553960,89554563,89557762	0.928571
stomach_female_adult_53_years	chr3	14511628	14511661	14511628	-	RAMPAGE_only	3	3	7	0.649553	2.807355	chr3	14511529	14511742	SINE|MIR|MIR	+	chr3	14491169	14513678	GRIP2|ENST00000430219.2	-	14491169,14494842,14496416,14503565,14505614,14506800,14507560,14509819,14511164,14511412,14512776,14513664	14493826,14494989,14496560,14503953,14505789,14506980,14507700,14509964,14511310,14511479,14512857,14513678	1.000000
stomach_female_adult_53_years	chr3	136625270	136625271	136625270	-	RAMPAGE_only	21	21	26	2.412624	3.736441	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.923077
stomach_female_adult_53_years	chr11	90251203	90251205	90251203	+	High_confidence	5	10	10	0.927932	3.121928	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.600000
stomach_female_adult_53_years	chr18	53745389	53745390	53745389	-	RAMPAGE_only	9	9	13	1.206312	2.661226	chr18	53745349	53745473	LTR|ERVL-MaLR|MLT1K	+	chr18	53480834	53581091	LINC01917|ENST00000650275.1	-	53480834,53505222,53533349,53535296,53580411,53581023	53481073,53505320,53533392,53535443,53580513,53581091	0.538462
stomach_female_adult_53_years	chr7	128622482	128622529	128622497	+	RAMPAGE_only	4	4	18	1.670278	3.947703	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128577968	128638790	STRG.29999.1	+	128577968,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128625796,128626294,128629393,128638773	128578033,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128625855,128626530,128629458,128638790	0.833333
stomach_female_adult_53_years	chr11	72135708	72135725	72135724	+	High_confidence	4	5	13	1.206312	3.392747	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	1.000000
stomach_female_adult_53_years	chr10	88667593	88667662	88667634	+	RAMPAGE_only	44	48	272	25.239754	5.708970	chr10	88667660	88667752	DNA|hAT-Ac|OldhAT1	+	chr10	88665542	88678811	STRG.38702.3	+	88665542,88667286,88667568,88668557,88669836,88671828,88673587,88675585,88676208,88678444	88665559,88667402,88667686,88668756,88669946,88671965,88673734,88675657,88676280,88678811	0.977941
stomach_female_adult_53_years	chr8	2726956	2726963	2726962	+	High_confidence	17	18	41	3.804522	4.765731	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.682927
stomach_female_adult_53_years	chr17	59892716	59892753	59892716	-	High_confidence	4	4	20	1.855864	3.784184	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.950000
stomach_female_adult_53_years	chr3	195688569	195688602	195688569	+	High_confidence	3	3	11	1.020725	2.663533	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688520	195708807	MUC20-OT1|ENST00000630417.2	+	195688520,195689338,195699029,195708133,195708746	195688797,195689438,195699207,195708435,195708807	0.727273
stomach_female_adult_53_years	chr15	42675612	42675613	42675612	+	High_confidence	6	6	8	0.742346	2.500000	chr15	42675586	42675640	LINE|L2|L2a	+	chr15	42675495	42682213	STARD9|ENST00000562139.1	+	42675495,42675871,42681421,42682103	42675746,42675975,42681612,42682213	0.750000
stomach_female_adult_53_years	chr7	101091432	101091455	101091441	+	RAMPAGE_only	10	11	26	2.412624	4.180833	chr7	101091445	101091756	SINE|Alu|AluSq2	+	chr7	101085438	101097967	TRIM56|ENST00000306085.10	+	101085438,101087005,101087311	101085571,101087168,101097967	0.961538
stomach_female_adult_53_years	chr12	24368633	24368634	24368633	-	RAMPAGE_only	11	14	16	1.484691	2.955913	chr12	24368549	24368674	LINE|L2|L2b	+	chr12	23845998	24357430	SOX5|ENST00000536729.2	-	23845998,23895897,24213342,24277215,24357337	23846193,23896024,24213417,24277312,24357430	0.937500
stomach_female_adult_53_years	chr12	75984006	75984018	75984012	-	High_confidence	3	3	9	0.835139	2.750000	chr12	75983502	75984058	LINE|L2|L2a	+	chr12	75563201	75984015	AC078923.1|ENST00000552856.1	-	75563201,75631166,75692104,75777499,75983720	75563400,75631314,75692179,75777530,75984015	0.666667
stomach_female_adult_53_years	chr17	64764534	64764554	64764534	-	High_confidence	6	6	17	1.577485	3.500000	chr17	64764423	64764603	SINE|Alu|AluSx1	+	chr17	64762383	64764453	STRG.58174.1	-	64762383,64764450	64762710,64764453	0.941176
stomach_female_adult_53_years	chr7	6590246	6590286	6590246	+	High_confidence	2	2	14	1.299105	3.235926	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590309	6594572	STRG.27246.1	+	6590309,6591645,6594434	6590475,6591867,6594572	0.857143
stomach_female_adult_53_years	chr20	45833293	45833313	45833293	-	High_confidence	9	9	32	2.969383	4.215061	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.937500
stomach_female_adult_53_years	chr9	123179135	123179188	123179187	-	RAMPAGE_only	7	12	26	2.412624	3.855389	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.846154
stomach_female_adult_53_years	chr4	142913001	142913029	142913001	-	RAMPAGE_only	9	9	40	3.711729	4.807009	chr4	142912769	142913127	LTR|ERVL-MaLR|THE1D	-	chr4	142405208	142847432	INPP4B|ENST00000506788.5	-	142405208,142429172,142431168,142462662,142725838,142847374	142405324,142429217,142431385,142462726,142725901,142847432	0.525000
stomach_female_adult_53_years	chr6	11728508	11728555	11728538	-	High_confidence	5	5	21	1.948658	4.021928	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.666667
stomach_female_adult_53_years	chr6	70783551	70783584	70783583	+	High_confidence	18	19	76	7.052284	5.371178	chr6	70782891	70788469	LINE|L1|L1PA4	+	chr6	70783432	70783822	STRG.24971.1	+	70783432	70783822	0.539474
stomach_female_adult_53_years	chrX	101499217	101499218	101499217	+	RAMPAGE_only	8	8	9	0.835139	2.500000	chrX	101498232	101500000	LTR|ERVL|HERV16-int	+	chrX	101485474	101533459	ARMCX4|ENST00000354842.4	+	101485474,101486022,101487192,101487607,101488043,101488443,101498144,101504936,101509363,101509589,101511024,101531643,101533083	101485530,101486092,101487272,101487691,101488099,101489315,101499366,101505355,101509427,101509678,101511055,101532012,101533459	0.888889
stomach_female_adult_53_years	chr6	118651542	118651593	118651563	-	High_confidence	28	28	152	14.104569	5.648752	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118565939	118651453	STRG.25891.1	-	118565939,118632452,118651196	118566316,118632611,118651453	0.980263
stomach_female_adult_53_years	chr16	81181330	81181331	81181330	-	High_confidence	5	5	8	0.742346	2.521641	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.750000
stomach_female_adult_53_years	chr3	190124256	190124278	190124277	-	RAMPAGE_only	9	9	24	2.227037	4.262692	chr3	190124217	190124287	LTR|ERVL|LTR40c	+	chr3	189956727	190122437	P3H2|NM_001134418.1	-	189956727,189963957,189970815,189971889,189972873,189973908,189974557,189983045,189984549,189986787,189987526,189988906,189994093,189995289,190122202	189958004,189964098,189970891,189972007,189973024,189974004,189974685,189983140,189984590,189986877,189987669,189989038,189994283,189995442,190122437	0.958333
stomach_female_adult_53_years	chr17	2975656	2975666	2975664	+	RAMPAGE_only	4	5	10	0.927932	3.169925	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2980293	2985066	STRG.55926.1	+	2980293,2981194,2984982	2980365,2981248,2985066	0.500000
stomach_female_adult_53_years	chr11	123061256	123061322	123061256	-	High_confidence	23	24	44	4.082901	3.975700	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.954545
stomach_female_adult_53_years	chr9	129489125	129489126	129489125	+	High_confidence	7	7	10	0.927932	2.521928	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.900000
stomach_female_adult_53_years	chr8	53523895	53523920	53523911	-	High_confidence	2	2	9	0.835139	2.500000	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.888889
stomach_female_adult_53_years	chr9	20658592	20658608	20658607	+	High_confidence	3	5	10	0.927932	2.725481	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.700000
stomach_female_adult_53_years	chr22	49657443	49657462	49657461	-	High_confidence	3	3	10	0.927932	2.503258	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49436223	49657457	C22orf34|ENST00000416411.1	-	49436223,49440875,49657404	49436375,49441212,49657457	0.500000
stomach_female_adult_53_years	chr6	16493280	16493292	16493291	-	RAMPAGE_only	25	25	48	4.454074	4.746115	chr6	16493229	16493323	LINE|L2|L2c	+	chr6	16432563	16750092	ATXN1|ENST00000483591.6	-	16432563,16432945,16485971,16522626,16585779,16657775,16749975	16432733,16433096,16486109,16522688,16585907,16657901,16750092	0.729167
stomach_female_adult_53_years	chr17	2667195	2667196	2667195	+	High_confidence	7	7	7	0.649553	2.521641	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.857143
stomach_female_adult_53_years	chrX	5726193	5726194	5726193	-	High_confidence	18	19	22	2.041451	3.784184	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.681818
stomach_female_adult_53_years	chr19	51886826	51886827	51886826	-	RAMPAGE_only	5	6	7	0.649553	2.584963	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51878400	51887889	ZNF577|ENST00000638538.1	-	51878400,51880322,51880678,51886115,51886820,51887831	51878515,51880401,51880877,51886145,51886912,51887889	0.714286
stomach_female_adult_53_years	chr10	93431475	93431497	93431475	-	RAMPAGE_only	3	3	6	0.556759	2.584963	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93404180	93409696	STRG.38818.1	-	93404180,93408786,93409572	93404219,93408915,93409696	0.833333
stomach_female_adult_53_years	chr8	38825356	38825361	38825360	+	RAMPAGE_only	6	6	10	0.927932	3.169925	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.900000
stomach_female_adult_53_years	chr16	89904130	89904135	89904130	+	RAMPAGE_only	5	5	11	1.020725	2.721928	chr16	89904174	89904222	LINE|CR1|L3	+	chr16	89895989	89907366	STRG.55689.4	+	89895989,89898556,89898766,89900634,89904117,89904937,89906193,89907242	89896083,89898649,89898872,89900794,89904205,89905096,89906284,89907366	0.727273
stomach_female_adult_53_years	chr12	46243269	46243297	46243269	-	RAMPAGE_only	2	3	13	1.206312	3.238901	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.923077
stomach_female_adult_53_years	chr4	152412488	152412498	152412497	-	High_confidence	7	7	15	1.391898	3.182006	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.933333
stomach_female_adult_53_years	chr19	35899320	35899345	35899320	-	High_confidence	2	2	9	0.835139	2.725481	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35887951	35899737	NFKBID|NM_001321831.1	-	35887951,35889889,35890373,35895979,35896217,35896391,35896725,35896912,35897650,35898471,35898718,35899706	35888612,35890054,35890490,35896128,35896269,35896538,35896831,35897103,35897838,35898532,35898822,35899737	0.666667
stomach_female_adult_53_years	chr6	33652523	33652524	33652523	+	RAMPAGE_only	4	4	7	0.649553	2.521641	chr6	33652459	33652763	SINE|Alu|AluSg	-	chr6	33621378	33696574	ITPR3|NM_002224.3	+	33621378,33640483,33655765,33657931,33658669,33659020,33659465,33662527,33662910,33663499,33663737,33664869,33665052,33665834,33667128,33667791,33668514,33668973,33670324,33670670,33671164,33672028,33673590,33674207,33675690,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33683206,33684019,33684356,33684597,33684773,33685358,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33621691,33640554,33655887,33658018,33658828,33659119,33659549,33662674,33663006,33663550,33663880,33664969,33665213,33665976,33667290,33667964,33668634,33669156,33670576,33670815,33671306,33672228,33673720,33674265,33675856,33676932,33677089,33677629,33678543,33678839,33680133,33680454,33680680,33682644,33683397,33684168,33684465,33684688,33684943,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696574	1.000000
stomach_female_adult_53_years	chr6	38612975	38612976	38612975	-	RAMPAGE_only	7	7	7	0.649553	2.807355	chr6	38612953	38613271	DNA|hAT-Charlie|MER33	+	chr6	38577598	38598094	BTBD9|ENST00000403056.2	-	38577598,38580217,38592575,38593963,38597909	38577719,38580437,38592840,38594327,38598094	0.571429
stomach_female_adult_53_years	chr5	108768097	108768098	108768097	+	High_confidence	4	5	7	0.649553	2.584963	chr5	108768042	108768250	LINE|CR1|L3b	-	chr5	108768108	108832914	STRG.21506.1	+	108768108,108782662,108798123,108832769	108768238,108782755,108798389,108832914	0.571429
stomach_female_adult_53_years	chr16	30729565	30729566	30729565	+	High_confidence	8	8	9	0.835139	2.500000	chr16	30729600	30729733	LINE|CR1|L3	+	chr16	30729536	30736263	STRG.54386.1	+	30729536,30733279,30733601,30733893,30734495,30736199	30729572,30733449,30733798,30734008,30734615,30736263	0.888889
stomach_female_adult_53_years	chr20	37344680	37344725	37344712	+	High_confidence	62	76	225	20.878473	6.813137	chr20	37344715	37344779	SINE|MIR|MIRc	+	chr20	37344684	37405432	SRC|NM_005417.4	+	37344684,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.506667
stomach_female_adult_53_years	chr17	47067487	47067518	47067498	-	High_confidence	135	147	459	42.592086	5.974950	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.958606
stomach_female_adult_53_years	chr6	80453180	80453187	80453180	+	High_confidence	5	5	13	1.206312	3.546594	chr6	80453039	80453457	LTR|ERVL-MaLR|MLT1I	-	chr6	80453198	80463207	AL359715.1|ENST00000443221.2	+	80453198,80454109,80462871	80453261,80454227,80463207	1.000000
stomach_female_adult_53_years	chr1	46181643	46181644	46181643	+	RAMPAGE_only	5	5	8	0.742346	2.500000	chr1	46181615	46181833	LINE|L2|L2b	-	chr1	46183432	46184882	TSPAN1|ENST00000482143.5	+	46183432,46184190,46184784	46183683,46184668,46184882	0.750000
stomach_female_adult_53_years	chr5	16704848	16704856	16704848	-	RAMPAGE_only	9	9	16	1.484691	3.125000	chr5	16704828	16705003	DNA|hAT-Charlie|MER5C	-	chr5	16666379	16738414	MYO10|ENST00000515803.5	-	16666379,16668276,16670525,16671421,16672688,16673681,16674852,16676030,16679946,16681308,16681870,16683879,16685737,16689823,16694370,16699449,16700962,16702542,16702924,16704578,16710907,16711120,16738135	16666793,16668468,16670978,16671542,16672825,16673889,16675150,16676154,16680104,16681503,16682013,16683935,16685831,16689919,16694614,16699573,16701838,16702588,16703158,16704685,16711022,16711245,16738414	1.000000
stomach_female_adult_53_years	chr1	109725878	109725927	109725878	+	High_confidence	3	3	10	0.927932	3.121928	chr1	109725516	109725947	LTR|ERVK|LTR3	+	chr1	109725819	109775252	AL158847.1|ENST00000431955.1	+	109725819,109732174,109736939,109775071	109726068,109732350,109737141,109775252	0.700000
stomach_female_adult_53_years	chr12	51406535	51406539	51406538	+	RAMPAGE_only	4	5	11	1.020725	3.277613	chr12	51406372	51406645	LINE|L2|L2b	-	chr12	51391735	51462892	SLC4A8|ENST00000547697.6	+	51391735,51407802,51440707,51450641,51452123,51453538,51457350,51458558,51459950,51461203	51392132,51407897,51440789,51451022,51452259,51453699,51457539,51458650,51460108,51462892	0.636364
stomach_female_adult_53_years	chr2	159228730	159228754	159228730	+	RAMPAGE_only	4	4	10	0.927932	2.646439	chr2	159228445	159228758	LINE|L2|L2	+	chr2	159224392	159232659	TANC1|ENST00000496406.1	+	159224392,159229577	159228896,159232659	1.000000
stomach_female_adult_53_years	chr1	166850222	166850266	166850222	+	RAMPAGE_only	11	11	40	3.711729	4.146439	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
stomach_female_adult_53_years	chr19	41194683	41194700	41194699	+	RAMPAGE_only	3	3	8	0.742346	2.750000	chr19	41194732	41194834	SINE|MIR|MIR	+	chr19	41193246	41201299	CYP2S1|ENST00000600561.1	+	41193246,41194543,41197778,41201230	41193441,41194709,41197928,41201299	0.625000
stomach_female_adult_53_years	chr21	28048446	28048447	28048446	+	High_confidence	52	52	57	5.289213	4.092832	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.982456
stomach_female_adult_53_years	chr7	99679851	99679887	99679875	-	High_confidence	6	6	17	1.577485	3.337175	chr7	99679672	99679870	SINE|MIR|MIRc	-	chr7	99666715	99679953	CYP3A5|ENST00000480723.5	-	99666715,99666951,99672579,99674532,99676114,99679825	99666810,99667065,99672679,99674585,99676208,99679953	0.764706
stomach_female_adult_53_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	9	9	11	1.020725	2.913977	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54228254	54325439	SSBP3|ENST00000426150.5	-	54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54257126,54281437,54325368	54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257186,54281527,54325439	0.545455
stomach_female_adult_53_years	chr12	13376226	13376227	13376226	-	High_confidence	10	10	11	1.020725	2.921928	chr12	13376083	13376246	DNA|hAT-Charlie|Charlie15a	-	chr12	13373013	13376430	LINC01559|ENST00000527705.2	-	13373013,13376223	13373438,13376430	0.909091
stomach_female_adult_53_years	chr5	78121803	78121804	78121803	-	RAMPAGE_only	10	10	11	1.020725	2.646439	chr5	78118215	78124355	LINE|L1|L1PA4	+	chr5	78088980	78116187	AP3B1|ENST00000517940.1	-	78088980,78100952,78110206,78113751,78116125	78089499,78101025,78110354,78113923,78116187	0.909091
stomach_female_adult_53_years	chr1	151369263	151369331	151369263	-	RAMPAGE_only	7	7	40	3.711729	4.516171	chr1	151369225	151369333	DNA|hAT-Tip100|MER91A	-	chr1	151369067	151370285	SELENBP1|ENST00000427867.2	-	151369067,151369441,151369712,151370200	151369189,151369554,151369769,151370285	0.550000
stomach_female_adult_53_years	chr9	76516712	76516722	76516712	+	RAMPAGE_only	3	3	7	0.649553	2.584963	chr9	76516620	76517014	LTR|ERV1|MER110A	-	chr9	76527872	76564463	STRG.34800.1	+	76527872,76553098,76564377	76527895,76553232,76564463	0.571429
stomach_female_adult_53_years	chr13	52429437	52429457	52429437	-	High_confidence	5	5	13	1.206312	3.546594	chr13	52429311	52429618	LINE|L2|L2b	+	chr13	52425769	52429367	VPS36|ENST00000492650.1	-	52425769,52426988,52427186,52429235	52426066,52427066,52427219,52429367	1.000000
stomach_female_adult_53_years	chr15	80059915	80059926	80059918	+	High_confidence	49	57	105	9.743288	4.894871	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.980952
stomach_female_adult_53_years	chr17	4143196	4143209	4143199	+	High_confidence	19	19	49	4.546868	4.740447	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.918367
stomach_female_adult_53_years	chr11	64242546	64242549	64242546	+	High_confidence	6	6	11	1.020725	3.121928	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.909091
stomach_female_adult_53_years	chr3	142159985	142160012	142160011	-	RAMPAGE_only	22	24	92	8.536976	3.905790	chr3	142159854	142160147	SINE|Alu|AluSx	-	chr3	142157526	142225607	GK5|NM_001039547.2	-	142157526,142170324,142171418,142172352,142177481,142181460,142182922,142185928,142186193,142186451,142187703,142198801,142204694,142213525,142215598,142225308	142165770,142170458,142171478,142172456,142177576,142181565,142183049,142185989,142186267,142186513,142187779,142198933,142204788,142213601,142215692,142225607	0.956522
stomach_female_adult_53_years	chr22	23705439	23705440	23705439	-	RAMPAGE_only	5	6	7	0.649553	2.807355	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23695190	23697926	STRG.65211.4	-	23695190,23697882	23695512,23697926	1.000000
stomach_female_adult_53_years	chr11	64226142	64226180	64226158	-	High_confidence	35	38	179	16.609985	6.635155	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.988827
stomach_female_adult_53_years	chr20	34369406	34369435	34369418	+	High_confidence	4	4	13	1.206312	3.546594	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34369414	34438629	STRG.63335.1	+	34369414,34393790,34408650,34412514,34413741,34424479,34438473	34369470,34393881,34408792,34412639,34413879,34424525,34438629	1.000000
stomach_female_adult_53_years	chr16	16017915	16017916	16017915	+	RAMPAGE_only	18	18	22	2.041451	4.221928	chr16	16017761	16018060	LINE|L2|L2a	-	chr16	16014539	16056561	ABCC1|ENST00000574224.1	+	16014539,16016495,16033108,16036471,16044449,16045835,16048141,16052723,16056091	16014628,16016621,16033170,16036603,16044680,16046013,16048303,16052816,16056561	0.545455
stomach_female_adult_53_years	chr4	184382288	184382295	184382294	-	High_confidence	24	26	49	4.546868	4.997064	chr4	184382179	184382738	LTR|ERVL|LTR67B	+	chr4	184372406	184382306	LINC02362|ENST00000608785.1	-	184372406,184376440,184378964,184382133	184372480,184376544,184379129,184382306	0.530612
stomach_female_adult_53_years	chr3	134485443	134485471	134485455	-	High_confidence	5	5	18	1.670278	3.690117	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.500000
stomach_female_adult_53_years	chr12	32473323	32473410	32473409	+	High_confidence	28	28	121	11.227979	4.684382	chr12	32472106	32473651	LTR|ERV1|LTR12C	+	chr12	32473311	32473754	STRG.44484.1	+	32473311	32473754	0.975207
stomach_female_adult_53_years	chr17	50271485	50271486	50271485	+	High_confidence	5	5	8	0.742346	2.500000	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
stomach_female_adult_53_years	chr5	151687233	151687261	151687233	-	High_confidence	2	2	7	0.649553	2.807355	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
stomach_female_adult_53_years	chr17	44208665	44208692	44208691	-	High_confidence	4	4	8	0.742346	2.750000	chr17	44208647	44208747	SINE|MIR|MIRc	-	chr17	44207171	44209160	STRG.57423.1	-	44207171,44207453,44207698,44207863,44208618	44207367,44207597,44207770,44207911,44209160	1.000000
stomach_female_adult_53_years	chr3	195688674	195688701	195688700	+	High_confidence	2	2	7	0.649553	2.807355	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688755	195708806	MUC20-OT1|ENST00000628547.2	+	195688755,195689338,195696360,195699029,195708133,195708746	195688797,195689438,195696589,195699178,195708435,195708806	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	150092616	150092624	150092616	-	RAMPAGE_only	18	19	45	1.021401	5.078639	chr5	150092452	150092809	LTR|ERVL-MaLR|THE1B	-	chr5	150053290	150086640	CSF1R|NM_001288705.1	-	150053290,150054321,150055236,150056025,150056218,150057286,150057503,150059699,150060861,150061490,150061722,150068214,150069872,150070181,150070455,150073300,150077275,150078111,150080051,150080766,150086378	150054224,150054430,150055336,150056137,150056341,150057384,150057592,150059862,150060972,150061595,150061849,150068330,150070063,150070302,150070571,150073493,150077435,150078248,150080336,150081024,150086640	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	17282810	17282825	17282810	+	RAMPAGE_only	10	11	46	1.044099	4.851366	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.586957
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	27367612	27367613	27367612	-	RAMPAGE_only	7	7	9	0.204280	2.947703	chr6	27367435	27367797	LTR|ERVL-MaLR|MSTA	-	chr6	27357822	27371525	ZNF204P|NR_002722.2	-	27357822,27363178,27367516,27370135	27360221,27363302,27367612,27371525	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	10363964	10363974	10363964	+	High_confidence	8	10	18	0.408560	3.836592	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.722222
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	241504042	241504082	241504047	-	RAMPAGE_only	3	5	19	0.431258	4.142664	chr1	241503964	241504054	SINE|MIR|MIRc	+	chr1	241497602	241519761	FH|ENST00000366560.3	-	241497602,241500436,241502442,241504041,241506002,241508602,241511966,241513602,241517181,241519590	241497970,241500590,241502570,241504245,241506168,241508785,241512143,241513713,241517316,241519761	0.842105
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	35432451	35432452	35432451	-	High_confidence	5	6	7	0.158885	2.584963	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	10363706	10363707	10363706	+	High_confidence	6	6	7	0.158885	2.584963	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	35834094	35834107	35834106	+	RAMPAGE_only	3	5	7	0.158885	2.807355	chr9	35834126	35834304	SINE|MIR|MIR3	+	chr9	35829497	35854847	TMEM8B|NM_001042590.2	+	35829497,35834460,35835010,35841133,35841525,35842391,35845974,35846257,35846468,35846816,35852826,35853140,35853504	35829955,35834650,35835218,35841267,35841794,35842717,35846068,35846381,35846611,35846995,35852973,35853257,35854847	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	59844251	59844302	59844301	-	RAMPAGE_only	4	4	12	0.272374	3.418296	chr11	59844132	59844437	SINE|Alu|AluSq2	-	chr11	59842466	59845499	GIF|ENST00000532070.1	-	59842466,59843878,59845374	59843141,59844055,59845499	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	161518139	161518169	161518168	+	RAMPAGE_only	3	3	11	0.249676	3.027169	chr1	161518213	161518545	LTR|ERV1|MER57F	+	chr1	161514619	161518603	FCGR2A|ENST00000486608.1	+	161514619,161517974	161514874,161518603	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	15798664	15798675	15798664	-	RAMPAGE_only	177	211	466	10.577177	6.483655	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.920601
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	113742067	113742089	113742088	-	RAMPAGE_only	2	2	10	0.226978	3.169925	chr4	113741593	113742168	LINE|L2|L2c	+	chr4	113735372	113749131	MSTRG.18806.1	-	113735372	113749131	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	57550351	57550373	57550354	+	RAMPAGE_only	3	3	11	0.249676	2.521928	chr15	57550184	57550365	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	132588435	132588450	132588435	+	RAMPAGE_only	2	2	6	0.136187	2.584963	chr5	132588152	132588636	LINE|L1|L1MD2	+	chr5	132579744	132588807	RAD50|ENST00000487596.1	+	132579744,132587561,132587923,132588686	132580066,132587690,132588089,132588807	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	41408311	41408312	41408311	+	RAMPAGE_only	4	4	7	0.158885	2.521641	chr15	41408185	41408660	LTR|ERVL-MaLR|MLT1K	+	chr15	41417103	41483563	RTF1|ENST00000389629.8	+	41417103,41438320,41452900,41457671,41464770,41466140,41470256,41471171,41474619,41475524,41475711,41476445,41477164,41477457,41478547,41479102,41480213,41480580	41417313,41438431,41453048,41457876,41464885,41466252,41470392,41471349,41474702,41475612,41475819,41476523,41477286,41477515,41478625,41479198,41480325,41483563	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	30569645	30569776	30569754	-	RAMPAGE_only	21	21	163	3.699742	5.600740	chr7	30569370	30570047	LTR|ERV1|MER4-int	+	chr7	30568832	30594809	MSTRG.22170.35	-	30568832,30576563,30579005,30579230,30585329,30594710	30574881,30578091,30579128,30579314,30585479,30594809	0.987730
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	32403108	32403236	32403115	-	RAMPAGE_only	16	18	106	2.405967	5.769879	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.933962
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	12552818	12552843	12552828	+	RAMPAGE_only	2	2	10	0.226978	3.321928	chr8	12552811	12553874	LINE|L1|L1M2	+	chr8	12437035	12559824	MSTRG.23344.1	+	12437035,12438163,12440968,12444755,12530942	12437710,12438511,12441061,12444894,12559824	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	170232584	170232618	170232614	+	RAMPAGE_only	13	13	47	1.066797	5.038319	chr3	170232572	170232840	SINE|Alu|AluJo	-	chr3	170222431	170305982	PRKCI|NM_002740.5	+	170222431,170235229,170259968,170263378,170267914,170270420,170273285,170275228,170280226,170281165,170281881,170284460,170291853,170293382,170295910,170297303,170298994,170303039	170222770,170235351,170260058,170263429,170268000,170270561,170273340,170275287,170280403,170281263,170281968,170284596,170291941,170293508,170295990,170297393,170299110,170305982	0.808511
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	107690066	107690091	107690077	-	RAMPAGE_only	3	3	13	0.295071	3.022055	chr4	107689628	107690653	LINE|L2|L2c	+	chr4	107659959	107720023	PAPSS1|ENST00000502431.5	-	107659959,107682014,107687038,107693770,107701170,107719842	107660072,107682133,107687177,107694006,107701285,107720023	0.769231
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	129584087	129584106	129584105	-	RAMPAGE_only	3	3	8	0.181582	2.521641	chr6	129583973	129584076	LINE|RTE-BovB|MamRTE1	-	chr6	129576131	129710225	ARHGAP18|ENST00000368149.2	-	129576131,129580069,129583987,129599215,129600641,129605876,129607892,129611532,129616211,129618686,129629352,129634041,129638393,129641815,129710023	129578604,129580131,129584112,129599356,129600848,129605959,129608052,129611610,129616303,129618852,129629522,129634105,129638629,129642018,129710225	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	131316069	131316084	131316083	+	RAMPAGE_only	2	2	7	0.158885	2.807355	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131264099	131394667	CDC42SE2|ENST00000505065.1	+	131264099,131315975,131359208,131385542,131390992	131264166,131316144,131359547,131385644,131394667	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	111387776	111387818	111387800	-	RAMPAGE_only	13	14	30	0.680934	4.186569	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	54448937	54448953	54448937	-	High_confidence	1	1	7	0.158885	2.584963	chr19	54448651	54448966	SINE|Alu|AluSg	+	chr19	54444812	54449014	LENG8-AS1|ENST00000429922.5	-	54444812,54448164,54448561	54445179,54448215,54449014	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	63563627	63563682	63563627	-	High_confidence	11	11	30	0.680934	4.593069	chr11	63563436	63563737	SINE|Alu|AluY	+	chr11	63552769	63563383	HRASLS2|ENST00000255695.1	-	63552769,63558391,63560084,63563315	63553065,63558660,63560193,63563383	0.866667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	65722895	65722916	65722915	-	High_confidence	4	4	9	0.204280	3.169925	chr5	65722781	65722883	DNA|hAT-Ac|OldhAT1	-	chr5	65680687	65723035	SGTB|ENST00000506816.1	-	65680687,65685367,65704278,65708488,65712960,65720707,65722756	65680794,65685472,65704378,65708558,65713064,65720829,65723035	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	12572746	12572809	12572746	-	RAMPAGE_only	2	2	18	0.408560	3.794653	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	88669499	88669500	88669499	+	RAMPAGE_only	4	4	7	0.158885	2.584963	chr10	88669260	88669512	LINE|L2|L2c	-	chr10	88664457	88678814	LIPF|ENST00000355843.2	+	88664457,88665478,88667286,88667568,88668656,88669836,88671828,88673587,88675585,88676208,88678444	88664491,88665559,88667402,88667686,88668756,88669946,88671965,88673734,88675657,88676280,88678814	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	73837439	73837486	73837450	-	RAMPAGE_only	17	18	68	1.543451	4.388215	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.985294
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	11192963	11192978	11192977	+	High_confidence	53	54	79	1.793126	5.111110	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.784810
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	151539216	151539217	151539216	-	RAMPAGE_only	5	5	8	0.181582	2.521641	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	122406522	122406553	122406522	+	RAMPAGE_only	23	23	70	1.588846	4.886147	chr9	122405232	122406719	LTR|ERV1|LTR12C	-	chr9	122403406	122448977	AL359636.1|ENST00000433572.2	+	122403406,122404671,122415713,122416767,122447428,122448929	122403456,122404791,122415782,122416885,122447545,122448977	0.700000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	80115068	80115069	80115068	+	RAMPAGE_only	16	16	16	0.363165	2.852217	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.812500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	132295322	132295323	132295322	+	RAMPAGE_only	9	9	9	0.204280	2.725481	chr3	132294972	132295434	LTR|ERV1|LTR2	+	chr3	132317366	132358752	ACPP|ENST00000336375.9	+	132317366,132328266,132331646,132332191,132337455,132342551,132344926,132349919,132352719,132356685	132317576,132328362,132331733,132332344,132337554,132342644,132345059,132350002,132352823,132358752	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	67571188	67571205	67571188	+	High_confidence	3	3	13	0.295071	3.546594	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	46711774	46711821	46711812	+	RAMPAGE_only	3	3	17	0.385863	3.454822	chr13	46711708	46711858	LINE|L1|X9_LINE	-	chr13	46553169	46753040	MSTRG.6668.2	+	46553169,46650200,46669029,46681740,46685904,46687851,46689132,46692535,46694892,46699335,46701120,46705067,46705267,46723220,46728846,46733920,46750539	46553703,46650345,46669156,46681846,46686041,46687979,46689196,46692641,46695017,46699403,46701207,46705157,46712597,46723330,46728984,46733998,46753040	0.941176
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	184590745	184590799	184590798	+	RAMPAGE_only	5	5	29	0.658236	2.950108	chr1	184590844	184591183	DNA|TcMar-Tigger|MER2B	+	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.896552
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	174975917	174975938	174975917	+	High_confidence	3	4	9	0.204280	2.503258	chr1	174975736	174975926	SINE|MIR|MIRb	+	chr1	174976028	174988807	RABGAP1L|ENST00000461613.1	+	174976028,174978806,174982833,174988640	174976182,174978890,174982905,174988807	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	97904654	97904676	97904675	-	RAMPAGE_only	4	4	10	0.226978	3.169925	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97370788	97920997	MSTRG.1248.2	-	97370788,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97720824,97740391,97828113,97883263,97920883	97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97920997	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	132285409	132285410	132285409	-	High_confidence	21	22	29	0.658236	4.664498	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.620690
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	24211894	24211904	24211894	-	High_confidence	2	2	7	0.158885	2.521641	chr14	24211871	24212083	SINE|MIR|MIR	-	chr14	24210664	24212109	CHMP4A|ENST00000552620.1	-	24210664,24211410,24211679	24210768,24211592,24212109	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	101505071	101505078	101505077	+	RAMPAGE_only	4	4	10	0.226978	2.947703	chrX	101505009	101505434	LTR|ERVL-MaLR|MSTB2	+	chrX	101485474	101533459	ARMCX4|ENST00000354842.4	+	101485474,101486022,101487192,101487607,101488043,101488443,101498144,101504936,101509363,101509589,101511024,101531643,101533083	101485530,101486092,101487272,101487691,101488099,101489315,101499366,101505355,101509427,101509678,101511055,101532012,101533459	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	222737198	222737290	222737289	+	High_confidence	411	431	1510	34.273684	7.583539	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.758278
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	122183647	122183719	122183718	+	High_confidence	10	10	55	1.248379	5.119153	chr3	122183547	122183832	LINE|L2|L2c	-	chr3	122183682	122286497	CASR|NM_000388.3	+	122183682,122253947,122257080,122261527,122275811,122282112,122283686	122183812,122254374,122257387,122262412,122276042,122282236,122286497	0.527273
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	76578480	76578506	76578480	-	RAMPAGE_only	2	2	8	0.181582	2.521641	chr17	76578366	76578512	DNA|hAT-Charlie|Charlie16a	+	chr17	76570578	76585856	ST6GALNAC2|ENST00000588120.5	-	76570578,76572636,76573194,76574364,76585683	76570668,76572775,76573363,76574539,76585856	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	48134294	48134313	48134294	-	RAMPAGE_only	4	4	9	0.204280	3.000000	chr16	48134080	48134247	DNA|hAT-Charlie|MER102a	-	chr16	48083695	48146430	ABCC12|ENST00000529504.5	-	48083695,48083908,48085592,48086740,48087939,48088544,48091119,48096745,48100871,48105138,48107321,48108439,48111435,48111586,48111775,48115414,48117260,48121715,48124212,48128458,48130787,48133686,48138227,48139162,48140686,48141205,48143909,48146305	48083801,48084073,48085706,48086819,48088085,48088734,48091209,48096932,48101009,48105336,48107425,48108529,48111507,48111662,48111910,48115618,48117333,48121840,48124284,48128737,48130895,48133835,48138375,48139336,48140920,48141353,48144065,48146430	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	123061207	123061328	123061256	-	High_confidence	59	61	357	8.103116	6.166163	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.971989
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	112332572	112332573	112332572	+	High_confidence	6	6	9	0.204280	2.750000	chr3	112332311	112332606	SINE|Alu|AluY	+	chr3	112332946	112362812	CD200|NM_001318828.1	+	112332946,112344961,112347557,112349711,112361542	112333224,112345288,112347830,112349819,112362812	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	55618850	55618904	55618850	-	High_confidence	11	12	27	0.612841	4.546594	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55548378	55618880	MSTRG.13621.3	-	55548378,55558774,55564312,55564901,55568193,55573618,55577314,55579678,55581566,55585050,55586617,55588878,55598415,55603977,55615382,55617143,55618065	55550006,55558968,55564497,55565041,55568363,55573777,55577356,55579781,55581698,55585167,55586734,55588956,55599039,55604076,55615506,55617978,55618880	0.962963
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	5680234	5680252	5680234	-	High_confidence	4	4	19	0.431258	3.461320	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.947368
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	128167352	128167373	128167354	-	High_confidence	5	7	13	0.295071	3.251629	chr9	128167300	128167414	LINE|L2|L2c	+	chr9	128166064	128167473	CIZ1|ENST00000485862.5	-	128166064,128166758,128167094	128166406,128166880,128167473	0.846154
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	29647530	29647557	29647556	+	High_confidence	4	4	11	0.249676	3.027169	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	203711074	203711090	203711089	+	RAMPAGE_only	3	5	9	0.204280	2.641604	chr1	203711131	203711274	SINE|MIR|MIRc	+	chr1	203682808	203740319	ATP2B4|ENST00000341360.6	+	203682808,203698156,203699459,203700205,203700797,203702043,203703651,203707008,203707861,203709300,203710876,203711959,203713164,203714170,203720548,203721196,203722477,203723880,203727394,203733222,203739545	203683398,203698354,203699717,203700331,203700923,203702079,203703813,203707223,203708104,203709542,203711108,203712139,203713252,203714277,203720740,203721410,203722689,203723988,203727571,203733400,203740319	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	87930831	87930866	87930855	+	RAMPAGE_only	5	5	20	0.453956	3.441446	chr10	87930827	87930981	SINE|MIR|MIR	+	chr10	87925522	87971930	MSTRG.3205.7	+	87925522,87933012,87952117,87957852,87960893,87965286	87931089,87933251,87952259,87958019,87961118,87971930	0.850000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	42805393	42805394	42805393	+	High_confidence	46	47	47	1.066797	5.132258	chr17	42805186	42805689	LINE|L2|L2c	-	chr17	42805403	42811587	CNTD1|ENST00000315066.5	+	42805403,42805721,42806673,42807767,42809364	42805432,42805884,42806818,42807864,42811587	0.531915
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	196715591	196715645	196715644	+	RAMPAGE_only	5	5	28	0.635539	4.254525	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	92244943	92244954	92244943	-	High_confidence	3	3	17	0.385863	3.202820	chr7	92244870	92245026	DNA|hAT-Charlie|MER20B	+	chr7	92200357	92245795	KRIT1|ENST00000412043.6	-	92200357,92201306,92213194,92213891,92214610,92221901,92222821,92225719,92226525,92234448,92234807,92235402,92236412,92237666,92240992,92242033,92244001,92244901,92245426	92200804,92201423,92213401,92213979,92214777,92222053,92222978,92225827,92226682,92234592,92234923,92235646,92236542,92237759,92241152,92242137,92244149,92245171,92245795	0.764706
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	140700445	140700452	140700445	+	High_confidence	1043	1427	2607	59.173174	4.786825	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.983506
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	63746917	63746948	63746947	-	RAMPAGE_only	2	2	11	0.249676	3.321928	chr15	63746812	63746905	LINE|L2|L2c	-	chr15	63622837	63833885	MSTRG.8484.4	-	63622837,63623724,63624157,63625984,63628676,63630465,63632708,63633847,63634732,63635960,63637504,63638410,63638710,63640151,63641469,63642956,63643403,63644991,63645482,63648068,63649724,63651252,63652413,63654118,63655741,63656087,63658543,63659735,63660972,63661752,63663004,63664469,63665918,63666355,63669537,63672495,63674341,63680076,63680536,63686358,63689588,63690540,63692410,63693963,63694311,63694773,63696123,63698727,63706779,63712774,63713352,63716301,63718573,63718782,63723181,63725291,63727646,63729235,63729496,63732923,63734723,63746917,63747723,63749366,63749646,63754504,63755228,63756436,63764095,63774693,63833821	63622891,63623890,63624327,63626154,63628815,63630635,63632811,63633970,63634888,63636142,63637643,63638536,63638776,63640445,63641643,63643058,63643550,63645097,63645682,63648199,63649925,63651380,63652541,63654324,63655955,63656358,63658718,63659936,63661025,63662021,63663204,63664594,63666150,63666472,63669698,63672694,63678365,63680160,63680776,63686535,63689699,63690647,63692566,63694157,63694549,63694894,63696339,63698996,63706831,63712895,63713665,63716473,63718694,63718897,63723355,63725513,63727838,63729368,63729649,63733145,63734849,63747083,63747858,63749538,63753085,63754648,63755325,63758369,63764191,63775649,63833885	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	79919478	79919479	79919478	+	High_confidence	5	5	8	0.181582	3.000000	chr17	79919488	79919611	SINE|MIR|MIR3	+	chr17	79919373	79925462	LINC01978|ENST00000572353.1	+	79919373,79925125	79919576,79925462	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	9869589	9869590	9869589	-	High_confidence	4	5	7	0.158885	2.584963	chr12	9869538	9869722	DNA|hAT-Charlie|MER105	-	chr12	9856900	9869386	CLEC2B|ENST00000540743.1	-	9856900,9862498,9869204	9857637,9862573,9869386	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	93499303	93499304	93499303	-	High_confidence	7	7	11	0.249676	3.277613	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	147382877	147382900	147382877	+	High_confidence	5	5	17	0.385863	3.101881	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.882353
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	2608296	2608311	2608310	+	High_confidence	7	7	13	0.295071	2.584963	chr12	2608211	2608425	SINE|MIR|MIRc	-	chr12	2607879	2610699	CACNA1C|ENST00000496818.2	+	2607879,2608510,2610540	2608063,2608712,2610699	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	237546421	237546439	237546438	+	High_confidence	4	4	9	0.204280	2.750000	chr2	237546379	237546439	DNA|hAT|MER53	-	chr2	237546404	237553843	MLPH|ENST00000477457.1	+	237546404,237549220,237552336,237553565	237546683,237549278,237552437,237553843	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	101998960	101998978	101998968	+	High_confidence	10	10	43	0.976006	4.693479	chr2	101998446	101999045	LTR|ERVL-MaLR|MLT1H1	-	chr2	101998961	102028423	IL1R2|NR_048564.1	+	101998961,102008514,102009561,102015870,102019637,102022186,102024532,102026110,102028225	101999116,102008642,102009826,102016051,102019812,102022249,102024668,102026253,102028423	0.953488
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	88675344	88675367	88675349	+	High_confidence	3	3	13	0.295071	3.418296	chr10	88675227	88675451	SINE|MIR|MIRc	+	chr10	88675492	88678514	LIPF|ENST00000496797.1	+	88675492,88676208,88678444	88675657,88676280,88678514	0.538462
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	3076866	3076896	3076895	+	High_confidence	3	3	8	0.181582	2.521641	chr6	3076851	3076944	SINE|tRNA|LFSINE_Vert	-	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	9391827	9391828	9391827	-	High_confidence	12	13	15	0.340467	3.378783	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9389914	9391822	THUMPD3-AS1|ENST00000522221.1	-	9389914,9391426	9390497,9391822	0.533333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	95493263	95493264	95493263	-	RAMPAGE_only	4	4	6	0.136187	2.584963	chr10	95493013	95493319	SINE|Alu|AluSg	+	chr10	95314736	95561355	SORBS1|ENST00000607232.5	-	95314736,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95355626,95357630,95367649,95371325,95375972,95381684,95383984,95384237,95397219,95399016,95410632,95421960,95422189,95432447,95437489,95441125,95491034,95561319	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357105,95357803,95367699,95371427,95376056,95381799,95384114,95384285,95397283,95399189,95410777,95422073,95422216,95432576,95437555,95441180,95491120,95561355	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	20969509	20969520	20969519	-	High_confidence	4	4	11	0.249676	3.121928	chr18	20969436	20969622	SINE|MIR|MIRc	+	chr18	20968484	20969354	ROCK1|ENST00000584875.1	-	20968484,20969114	20968860,20969354	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	100274561	100274577	100274576	+	RAMPAGE_only	3	3	10	0.226978	2.947703	chr1	100274459	100274651	DNA|hAT-Charlie|MER3	+	chr1	100266288	100292769	MSTRG.1287.5	+	100266288,100266523,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100292769	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	23314110	23314137	23314110	-	High_confidence	3	3	11	0.249676	3.027169	chr1	23313981	23314167	LINE|L1|L1ME4b	+	chr1	23303962	23313601	HNRNPR|ENST00000641107.1	-	23303962,23306411,23310827,23311200,23313552	23304106,23306503,23311066,23311322,23313601	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	47486749	47486784	47486749	-	High_confidence	4	4	17	0.385863	3.734522	chr11	47486415	47486707	SINE|Alu|AluSz6	-	chr11	47477295	47486799	CELF1|ENST00000422993.2	-	47477295,47478876,47482694,47484388,47486749	47477425,47478952,47482856,47484523,47486799	0.764706
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	110874045	110874328	110874191	+	RAMPAGE_only	19	19	373	8.466281	4.361283	chr10	110874056	110874276	SINE|MIR|MIRb	+	chr10	110871954	110894179	MSTRG.3434.5	+	110871954,110883002,110885252,110887664,110889532,110890555,110894090	110881535,110883097,110885366,110887886,110889630,110890670,110894179	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	9965320	9965321	9965320	+	RAMPAGE_only	12	12	13	0.295071	3.418296	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971504	9995694	CLEC12A|ENST00000449959.6	+	9971504,9978965,9980581,9982019,9995017	9971687,9979524,9980733,9982129,9995694	0.615385
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	75590514	75590515	75590514	+	RAMPAGE_only	14	15	20	0.453956	3.681881	chr17	75590498	75590621	SINE|MIR|MIRc	-	chr17	75588057	75591712	MYO15B|ENST00000645453.1	+	75588057,75590625,75590906,75591171,75591615	75590243,75590689,75591016,75591246,75591712	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	101466926	101466943	101466942	-	RAMPAGE_only	7	8	12	0.272374	2.845351	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	31186117	31186399	31186398	-	High_confidence	3991	4221	6135	139.251026	7.637849	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31164600	31186457	MSTRG.20866.8	-	31164600,31165127,31165570,31165926,31177351	31164867,31165286,31165701,31176688,31186457	0.998207
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	53075641	53075715	53075641	-	High_confidence	2	2	13	0.295071	3.251629	chr19	53075307	53076101	LTR|ERVL|MER21B	+	chr19	53066614	53075967	ZNF160|ENST00000601421.5	-	53066614,53074139,53075056	53070262,53074268,53075967	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	77175289	77175303	77175302	+	High_confidence	8	10	15	0.340467	3.589898	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.933333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	40955424	40955428	40955427	+	RAMPAGE_only	3	3	7	0.158885	2.521641	chr22	40955400	40955665	DNA|hAT-Charlie|MER33	-	chr22	40951358	40961059	MSTRG.16289.2	+	40951358,40953554,40956922	40951476,40956469,40961059	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	71291136	71291167	71291161	+	High_confidence	2	3	12	0.272374	3.095795	chr6	71290785	71291650	LINE|L2|L2	-	chr6	71291361	71293612	OGFRL1|ENST00000467503.1	+	71291361,71293292,71293532	71292020,71293379,71293612	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	233457366	233457566	233457454	+	RAMPAGE_only	12	15	164	3.722440	5.348656	chr2	233457431	233457811	LINE|L2|L2c	-	chr2	233419240	233457817	DGKD|ENST00000490764.5	+	233419240,233434379,233434768,233435817,233436315,233437376,233438216,233441886,233445622,233446711,233448086,233448275,233449102,233449981,233450921,233451963,233454762,233456898,233457220	233419421,233434484,233434901,233435924,233436441,233437479,233438379,233441995,233445762,233446796,233448181,233448375,233449376,233450131,233451050,233452060,233454873,233456995,233457817	0.920732
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	111841668	111841707	111841706	-	High_confidence	3	4	11	0.249676	3.321928	chr12	111841557	111841731	SINE|MIR|MIRb	+	chr12	111839806	111841706	MAPKAPK5-AS1|ENST00000609228.1	-	111839806,111841326	111840031,111841706	0.545455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	42027538	42027539	42027538	+	RAMPAGE_only	6	6	8	0.181582	2.500000	chr18	42027565	42027649	DNA|hAT-Charlie|MER58B	+	chr18	42025781	42037817	PIK3C3|ENST00000590013.2	+	42025781,42027442,42029324,42033825,42037691	42025939,42027548,42029441,42033957,42037817	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	70162775	70162811	70162810	-	High_confidence	3	3	12	0.272374	3.084963	chr10	70162681	70163236	DNA|TcMar-Tigger|Tigger1	+	chr10	70150203	70163031	SAR1A|ENST00000373238.5	-	70150203,70153837,70157763,70161003,70161618,70161857,70162689	70152592,70153969,70157867,70161069,70161738,70161931,70163031	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	42878211	42878237	42878211	-	RAMPAGE_only	30	31	160	3.631649	5.293275	chr17	42878058	42878260	SINE|Alu|AluSx	+	chr17	42874669	42898704	LINC00671|ENST00000301683.7	-	42874669,42877974,42878526,42894565,42897686,42898632	42874863,42878073,42879818,42894634,42897918,42898704	0.506250
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	8649441	8649442	8649441	+	RAMPAGE_only	4	4	7	0.158885	2.807355	chr20	8649465	8649857	LTR|ERVL-MaLR|MSTC	+	chr20	8658620	8968360	PLCB1|ENST00000487210.5	+	8658620,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448,8788632,8789517,8790174,8802055,8962195,8965089,8967219	8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788525,8788722,8789575,8790261,8802173,8963010,8965151,8968360	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	31178645	31179102	31179008	-	RAMPAGE_only	27	29	472	10.713363	6.344389	chr6	31178820	31179212	LINE|L2|L2	+	chr6	31164600	31186457	MSTRG.20866.8	-	31164600,31165127,31165570,31165926,31177351	31164867,31165286,31165701,31176688,31186457	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	69563148	69563151	69563148	+	RAMPAGE_only	9	9	15	0.340467	3.664498	chr15	69563010	69563181	SINE|MIR|MIRb	+	chr15	69561956	69680396	DRAIC|ENST00000644274.1	+	69561956,69563115,69563589,69565193,69570739,69578325,69671725,69677545,69680210	69562017,69563302,69563804,69565527,69570904,69578461,69671907,69677640,69680396	0.933333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	182928788	182928798	182928788	-	RAMPAGE_only	20	22	32	0.726330	4.164735	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.531250
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	95399340	95399364	95399363	-	RAMPAGE_only	2	2	8	0.181582	2.807355	chr10	95399346	95399491	DNA|hAT-Charlie|MER58A	+	chr10	95384050	95413764	SORBS1|ENST00000465489.1	-	95384050,95384237,95397219,95399016,95406117,95410632,95413552	95384114,95384285,95397283,95399189,95406147,95410777,95413764	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	174874395	174874439	174874418	+	High_confidence	45	52	225	5.107006	6.894740	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.648889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	172854698	172854707	172854698	+	RAMPAGE_only	6	7	14	0.317769	3.085055	chr5	172854401	172854991	DNA|TcMar-Tigger|MER6A	+	chr5	172834410	172920571	ERGIC1|ENST00000523291.5	+	172834410,172888698,172897001,172909666,172914713,172920363	172834433,172888760,172897074,172909761,172914838,172920571	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	8788252	8788253	8788252	+	High_confidence	7	8	8	0.181582	2.807355	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	38499842	38499853	38499852	-	RAMPAGE_only	6	6	10	0.226978	2.921928	chr22	38499594	38499814	SINE|MIR|MIRc	-	chr22	38498552	38505901	DDX17|ENST00000467279.1	-	38498552,38499399,38501129,38505461	38498573,38499499,38501280,38505901	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	86368952	86368973	86368952	+	RAMPAGE_only	8	10	21	0.476654	4.297079	chr8	86368776	86369052	LINE|L2|L2c	+	chr8	86374040	86467476	WWP1|ENST00000265428.4	+	86374040,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	0.904762
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	27579368	27579393	27579392	+	RAMPAGE_only	4	4	8	0.181582	2.500000	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	123179220	123179221	123179220	-	RAMPAGE_only	16	16	18	0.408560	3.683542	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	31121301	31121338	31121337	-	RAMPAGE_only	17	25	42	0.953308	4.139241	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.928571
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	65382641	65382680	65382641	-	High_confidence	3	3	20	0.453956	4.037401	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.950000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	73567606	73567641	73567616	+	High_confidence	145	151	341	7.739951	6.030393	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.958944
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	20658568	20658624	20658607	+	High_confidence	11	16	51	1.157588	4.577799	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.647059
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	34174921	34174936	34174921	+	High_confidence	2	3	6	0.136187	2.584963	chr8	34174849	34181329	LINE|L1|L1PB1	+	chr8	34174885	34184895	AC087855.2|ENST00000518217.1	+	34174885,34184486	34175013,34184895	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	31182795	31183164	31183120	-	RAMPAGE_only	18	19	272	6.173803	5.667614	chr6	31182432	31184449	LTR|ERV1|Harlequin-int	-	chr6	31164600	31186457	MSTRG.20866.8	-	31164600,31165127,31165570,31165926,31177351	31164867,31165286,31165701,31176688,31186457	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	11507459	11507466	11507465	-	High_confidence	3	4	6	0.136187	2.584963	chr19	11507282	11507445	SINE|Alu|FRAM	-	chr19	11506074	11507709	ECSIT|ENST00000585898.1	-	11506074,11507456	11506428,11507709	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	68882755	68882772	68882771	-	High_confidence	5	5	10	0.226978	2.725481	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.700000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	81427132	81427146	81427132	-	High_confidence	2	2	7	0.158885	2.584963	chr14	81426946	81427161	SINE|MIR|MIR	-	chr14	81260649	81427212	STON2|NM_033104.3	-	81260649,81276900,81370987,81395893,81398294,81427101	81270872,81278739,81371185,81396178,81398580,81427212	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	21874180	21874204	21874180	-	RAMPAGE_only	1	1	8	0.181582	2.807355	chr1	21874115	21874327	SINE|MIR|MIRb	-	chr1	21822244	21896271	MSTRG.395.1	-	21822244,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21888667,21889980,21890426,21890584,21895921,21896174	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21888718,21890141,21890485,21890694,21895966,21896271	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	26484067	26484086	26484067	+	High_confidence	2	2	8	0.181582	2.500000	chr22	26484072	26484276	SINE|MIR|MIRb	+	chr22	26483883	26491938	SRRD|NM_001013694.2	+	26483883,26486022,26488028,26488389,26490043,26491024,26491462	26484099,26486063,26488288,26488488,26490198,26491070,26491938	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	92905569	92905603	92905569	-	RAMPAGE_only	2	2	9	0.204280	2.947703	chr12	92905317	92905616	SINE|Alu|AluSz	+	chr12	92802664	92929327	EEA1|ENST00000418984.7	-	92802664,92809016,92811278,92812979,92816199,92819307,92826165,92827911,92832511,92842464,92851110,92852174,92852911,92853914,92857274,92857430,92891628,92929042	92802734,92809156,92811434,92813093,92816400,92819511,92826285,92828061,92832850,92842581,92851266,92852296,92853025,92853954,92857340,92857485,92891721,92929327	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	116786550	116786573	116786572	-	High_confidence	7	7	16	0.363165	3.452820	chr11	116786570	116786754	SINE|MIR|MIR3	+	chr11	116782157	116785843	ZPR1|ENST00000449430.1	-	116782157,116782918,116783529,116784377,116784858,116785098,116785513,116785795	116782244,116783029,116783619,116784498,116784921,116785146,116785636,116785843	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	29165983	29166038	29166018	-	RAMPAGE_only	3	4	15	0.340467	3.664498	chr1	29165912	29166153	SINE|tRNA-RTE|MamSINE1	-	chr1	29154696	29181882	MSTRG.528.6	-	29154696,29159373,29160374,29168502	29154910,29159486,29166912,29181882	0.933333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	31466501	31466530	31466527	-	High_confidence	4	4	12	0.272374	3.459432	chr5	31466363	31466531	DNA|TcMar-Mariner|MARNA	-	chr5	31449368	31466486	DROSHA|ENST00000507174.1	-	31449368,31451532,31464235,31466181	31449419,31451640,31464343,31466486	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	130079507	130079532	130079507	+	RAMPAGE_only	4	4	10	0.226978	2.725481	chr9	130079384	130079578	SINE|MIR|MIRb	+	chr9	130053924	130136123	GPR107|ENST00000610997.1	+	130053924,130075635,130076411,130077298,130079629,130083564,130086419,130090875,130092247,130099456,130100628,130101105,130104419,130107495,130110369,130114572,130124914,130127482,130128639,130135024	130054073,130075749,130076462,130077378,130079769,130083602,130086476,130090983,130092381,130099532,130100702,130101223,130104550,130107539,130110422,130114663,130124964,130127566,130128761,130136123	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	77127872	77127877	77127872	+	High_confidence	21	21	36	0.817121	4.969816	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	773047	773099	773098	-	RAMPAGE_only	3	3	13	0.295071	2.815072	chr1	773082	773132	LINE|L2|L2c	+	chr1	725884	778626	AL669831.1|ENST00000506640.2	-	725884,733306,735422,743179,744194,744727,746694,756076,758966,764722,766328,768547,769496,772975,774170,778283	729804,733364,735613,743350,744391,744825,746818,756141,759123,765247,766387,768613,769712,773107,774280,778626	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	43881166	43881167	43881166	+	High_confidence	4	5	7	0.158885	2.807355	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	55676628	55676645	55676628	+	High_confidence	5	5	14	0.317769	3.392747	chr19	55676523	55676713	SINE|MIR|MIRb	-	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.928571
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	85710391	85710407	85710406	+	High_confidence	3	4	6	0.136187	2.584963	chr15	85710130	85710495	LINE|L2|L2c	-	chr15	85710442	85717391	AKAP13|ENST00000559278.1	+	85710442,85715787,85717289	85710645,85715923,85717391	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	28354137	28354156	28354137	-	High_confidence	5	5	16	0.363165	3.640224	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329373	28354186	ZSCAN31|ENST00000446222.5	-	28329373,28336789,28353861,28354130	28329778,28336943,28353952,28354186	0.687500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	55416746	55416774	55416757	+	High_confidence	2	2	9	0.204280	3.000000	chr4	55416684	55416807	LINE|CR1|L3	-	chr4	55416922	55425537	TMEM165|ENST00000508561.5	+	55416922,55417802,55418047,55424537,55425375	55417247,55417848,55418164,55424643,55425537	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	70442889	70442906	70442905	+	RAMPAGE_only	6	6	10	0.226978	2.503258	chr6	70441982	70443208	LINE|L1|L1MC5a	-	chr6	70439626	70450707	MSTRG.21219.1	+	70439626	70450707	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	29963558	29963561	29963560	+	High_confidence	12	17	20	0.453956	4.221928	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.650000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	169812903	169812922	169812903	-	High_confidence	7	7	16	0.363165	3.024397	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	47751575	47751595	47751594	-	RAMPAGE_only	3	3	6	0.136187	2.584963	chr11	47751373	47751591	DNA|hAT-Charlie|MER20	-	chr11	47731839	47767286	FNBP4|ENST00000534003.5	-	47731839,47734024,47736615,47743952,47746055,47750915,47751142,47752915,47754527,47765269,47767068	47732670,47734129,47736740,47744163,47746394,47751036,47751290,47753102,47754664,47765362,47767286	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	101217578	101217599	101217578	-	High_confidence	7	9	24	0.544747	4.418296	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	39021125	39021156	39021155	+	High_confidence	11	11	64	1.452659	5.248394	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.921875
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	13376708	13376711	13376708	-	High_confidence	18	18	45	1.021401	4.860238	chr12	13376413	13376888	LTR|ERVL|MLT2B1	-	chr12	13371088	13376711	LINC01559|ENST00000318426.6	-	13371088,13376223,13376513	13373438,13376425,13376711	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	94823784	94823797	94823796	+	RAMPAGE_only	3	3	6	0.136187	2.584963	chr10	94823737	94823864	LINE|L1|HAL1	+	chr10	94773836	94853164	CYP2C19|ENST00000645461.1	+	94773836,94775389,94780498,94781820,94842836,94849916,94852732	94775220,94775539,94780659,94781997,94843024,94850058,94853164	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	137254859	137254969	137254968	-	RAMPAGE_only	24	29	176	3.994813	5.523660	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.982955
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	44439852	44439917	44439896	-	RAMPAGE_only	8	11	61	1.384566	5.143983	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431719	44477670	ZNF445|ENST00000396077.7	-	44431719,44449512,44450446,44450867,44451313,44455120,44458243,44477590	44448739,44449623,44450573,44450962,44451482,44455696,44458364,44477670	0.508197
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	20204028	20204057	20204056	-	RAMPAGE_only	3	3	8	0.181582	2.807355	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	93455156	93455183	93455182	+	RAMPAGE_only	3	3	9	0.204280	2.750000	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	89656021	89656046	89656045	-	RAMPAGE_only	4	4	8	0.181582	2.807355	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642784	89819718	MSTRG.21352.3	-	89642784,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89706058,89707360,89708495,89710680,89712035,89712574,89713147,89714542,89715652,89716649,89718365,89718766,89719135,89722954,89723511,89725198,89728930,89730725,89732556,89738325,89740233,89743149,89743575,89745272,89745491,89747328,89749222,89749542,89750353,89751430,89753511,89754082,89756276,89758254,89758815,89761644,89762318,89771560,89772572,89774620,89776599,89780211,89781398,89785011,89787853,89789779,89790158,89793761,89794099,89794576,89803327,89819505	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89706192,89707476,89708628,89710794,89712256,89712786,89713296,89714751,89715769,89716809,89718627,89719030,89719225,89723143,89723619,89727955,89729139,89730923,89732775,89738455,89740378,89743280,89743714,89745411,89745626,89747470,89749369,89749751,89750532,89751582,89753622,89754230,89756390,89758351,89758960,89761748,89762530,89771621,89772721,89774733,89776695,89780293,89781592,89785126,89787957,89789911,89790401,89793954,89794207,89794801,89803554,89819718	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	111813153	111813154	111813153	-	RAMPAGE_only	6	9	9	0.204280	2.947703	chr9	111813057	111813233	SINE|MIR|MIRb	+	chr9	111686518	111795008	C9orf84|NR_109816.1	-	111686518,111691550,111693798,111694230,111699953,111702104,111705246,111706567,111707854,111713099,111714444,111718183,111722408,111723791,111727632,111738279,111741475,111746233,111748091,111756324,111758083,111758694,111775790,111780929,111785911,111791373,111794899	111686870,111692511,111693948,111694362,111700047,111702226,111705364,111706746,111707924,111713172,111714623,111718288,111722585,111723911,111728049,111738522,111741570,111746342,111748199,111756478,111758195,111758848,111775975,111781017,111786035,111791454,111795008	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	4606230	4606231	4606230	-	RAMPAGE_only	4	4	7	0.158885	2.584963	chr9	4605799	4611811	LINE|L1|L1PA3	+	chr9	4588820	4666423	SPATA6L|ENST00000461761.5	-	4588820,4596434,4600652,4604178,4605346,4617922,4618863,4622407,4625326,4629090,4635274,4656040,4661898,4666211	4588961,4596530,4600809,4604269,4605440,4618110,4618898,4622510,4625566,4629168,4635399,4656089,4662036,4666423	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	70699146	70699168	70699146	-	High_confidence	3	3	12	0.272374	3.251629	chr15	70699102	70699197	SINE|MIR|MIR	+	chr15	70671877	70699666	UACA|ENST00000560523.5	-	70671877,70676492,70677107,70678098,70679607,70682757,70684264,70687539,70687749,70690453,70691298,70695016,70699526	70672001,70676591,70677140,70678206,70679676,70682795,70684446,70687646,70687820,70690511,70691363,70695105,70699666	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	108768129	108768195	108768129	+	RAMPAGE_only	4	5	30	0.680934	3.807355	chr5	108768042	108768250	LINE|CR1|L3b	-	chr5	108748966	108843001	FER|ENST00000502752.1	+	108748966,108768092,108782662,108798123,108832769,108835707,108841830,108842261	108748993,108768238,108782755,108798389,108832943,108835807,108841868,108843001	0.700000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	58306086	58306166	58306086	+	High_confidence	7	7	46	1.044099	4.831940	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58315203	MSTRG.13180.29	+	58305376,58306087,58314747	58305445,58312462,58315203	0.934783
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	102261172	102261189	102261172	-	High_confidence	3	3	10	0.226978	2.846439	chr8	102261109	102261291	DNA|hAT-Ac|OldhAT1	+	chr8	102253945	102261986	UBR5|ENST00000517465.1	-	102253945,102257631,102258315,102258984,102261145,102261914	102254514,102257717,102258424,102259129,102261259,102261986	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	150118753	150118768	150118753	-	RAMPAGE_only	1	1	9	0.204280	3.000000	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	52569721	52569722	52569721	-	High_confidence	6	6	6	0.136187	2.584963	chr15	52569688	52569809	LINE|L2|L2	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	40400708	40400735	40400734	+	RAMPAGE_only	3	3	10	0.226978	3.169925	chr22	40400675	40400747	SINE|MIR|MIR3	+	chr22	40404112	40410103	SGSM3|ENST00000478085.5	+	40404112,40404556,40405140,40405648,40406077,40406437,40408626,40408793,40409464	40404455,40404664,40405284,40405844,40406223,40408429,40408697,40409372,40410103	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	156254999	156255009	156254999	-	High_confidence	2	2	7	0.158885	2.584963	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156021750	156254950	LINC01876|ENST00000636956.1	-	156021750,156022671,156024465,156205381,156227966,156254777	156021899,156022817,156024607,156205438,156228004,156254950	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	99892036	99892057	99892056	-	RAMPAGE_only	165	165	427	9.691962	5.005820	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.981265
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	68736450	68736505	68736459	-	RAMPAGE_only	45	49	160	3.631649	6.149518	chr4	68735466	68736444	LTR|ERV1|MER61-int	-	chr4	68704599	68712498	AC147055.1|ENST00000509261.1	-	68704599,68708647,68710039,68712312	68704874,68708855,68710120,68712498	0.700000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	168093050	168093063	168093055	-	High_confidence	192	202	395	8.965632	5.113976	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.951899
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	27441039	27441059	27441039	-	High_confidence	4	4	10	0.226978	3.169925	chr13	27440765	27441196	DNA|TcMar-Tigger|Tigger2a	-	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	97516102	97516140	97516139	-	RAMPAGE_only	3	3	10	0.226978	3.321928	chr2	97516030	97516368	LINE|L2|L2c	-	chr2	97492662	97589721	ANKRD36B|ENST00000359901.8	-	97492662,97507035,97507563,97507994,97509580,97511137,97513179,97515731,97523325,97532310,97536299,97536467,97538167,97538334,97540033,97540200,97541910,97542078,97543789,97543956,97545665,97545832,97547535,97547702,97549418,97549585,97551288,97551451,97553167,97553342,97555059,97555225,97556936,97557103,97558798,97558965,97560664,97560831,97576378,97578905,97580461,97584943,97585283,97589524	97492855,97507065,97507657,97508065,97509733,97512052,97513363,97515945,97523467,97532384,97536372,97536496,97538240,97538363,97540106,97540229,97541983,97542107,97543862,97543985,97545738,97545861,97547608,97547731,97549491,97549614,97551361,97551480,97553240,97553371,97555132,97555254,97557009,97557132,97558871,97558994,97560737,97560860,97576446,97579043,97580568,97585117,97585398,97589721	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	89272854	89272887	89272859	-	High_confidence	11	12	104	2.360572	5.468583	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.980769
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	24011756	24011757	24011756	+	High_confidence	12	12	12	0.272374	3.584963	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	152388044	152388116	152388115	+	RAMPAGE_only	7	8	38	0.862517	3.935446	chr3	152388069	152388242	DNA|TcMar-Tigger|Tigger12A	+	chr3	152268905	152432917	MSTRG.17666.5	+	152268905,152299404,152301918,152329734,152375943,152414940,152432716	152269092,152300367,152329658,152375877,152396224,152415111,152432917	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	28952183	28952192	28952191	+	RAMPAGE_only	3	3	8	0.181582	2.521641	chr16	28952153	28952214	DNA|hAT-Ac|OldhAT1	+	chr16	28950996	28966465	NFATC2IP|NM_032815.3	+	28950996,28952131,28954564,28955977,28956150,28958716,28958990,28963704	28951398,28952204,28954682,28956058,28956337,28958861,28959100,28966465	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	120424301	120424323	120424301	-	RAMPAGE_only	3	4	9	0.204280	2.641604	chr3	120424156	120424320	SINE|Alu|FRAM	+	chr3	120423526	120450960	FSTL1|ENST00000485968.5	-	120423526,120450683,120450896	120424076,120450746,120450960	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	44951131	44951148	44951147	+	RAMPAGE_only	3	3	6	0.136187	2.584963	chrX	44950752	44951268	LTR|ERV1|LTR10D	+	chrX	44873551	45111411	KDM6A|ENST00000621147.4	+	44873551,44873923,44961283,44974665,45010960,45020609,45034930,45037654,45053828,45059005,45059246,45061323,45063421,45069578,45076696,45078399,45107456,45110078,45111381	44873712,44873987,44961392,44974715,45011019,45020730,45034985,45037689,45053955,45059104,45059466,45061419,45063817,45070357,45076826,45078493,45107536,45110249,45111411	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	244825	244847	244846	-	High_confidence	2	2	7	0.158885	2.584963	chr18	243923	245900	LINE|L1|L1MEi	-	chr18	214520	245734	THOC1|ENST00000583228.5	-	214520,215428,216485,218885,223439,224083,224923,225088,226800,244301	214921,215504,216633,218969,223505,224179,224994,225403,226901,245734	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	86350849	86350883	86350849	-	RAMPAGE_only	2	2	10	0.226978	2.641604	chr1	86350104	86351866	LINE|L1|L1PA7	-	chr1	86346823	86396262	ODF2L|ENST00000359242.7	-	86346823,86352858,86354529,86354773,86356443,86358786,86360425,86368635,86371017,86372430,86376232,86382241,86382930,86383133,86384675,86385457,86386914,86396032	86352208,86352984,86354692,86354859,86356602,86358891,86360536,86368722,86371153,86372540,86376418,86382358,86383002,86383196,86384801,86385590,86387079,86396262	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	48479384	48479385	48479384	+	RAMPAGE_only	23	24	29	0.658236	4.651084	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48440796	48515386	PPP1R21|ENST00000294952.12	+	48440796,48451007,48454594,48458125,48459753,48460094,48461137,48464936,48465492,48471086,48471278,48474682,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48441010,48451076,48454741,48458227,48459918,48460153,48461232,48464989,48465642,48471188,48471367,48474819,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515386	0.655172
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	62376790	62376801	62376800	-	High_confidence	5	6	11	0.249676	2.921928	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	3062922	3062983	3062982	-	High_confidence	15	17	91	2.065500	5.486983	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	8817798	8817799	8817798	+	RAMPAGE_only	9	9	9	0.204280	2.947703	chr21	8817416	8819072	LINE|L1|L1PB	-	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	179376606	179376630	179376606	+	High_confidence	3	4	11	0.249676	3.277613	chr3	179376513	179376739	DNA|hAT-Charlie|MER58A	-	chr3	179376921	179377432	MFN1|ENST00000466287.1	+	179376921,179377343	179377168,179377432	0.545455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	13376665	13376679	13376665	-	High_confidence	14	15	29	0.658236	4.664498	chr12	13376413	13376888	LTR|ERVL|MLT2B1	-	chr12	13371088	13376711	LINC01559|ENST00000318426.6	-	13371088,13376223,13376513	13373438,13376425,13376711	0.862069
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	116648828	116648917	116648828	-	RAMPAGE_only	11	11	81	1.838522	5.269121	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.987654
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	11193340	11193367	11193340	+	High_confidence	24	26	85	1.929313	4.908944	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.764706
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	122279513	122279548	122279538	+	RAMPAGE_only	8	8	29	0.658236	3.550528	chr4	122278929	122279676	DNA|TcMar-Mariner|HSMAR2	-	chr4	122254858	122325784	KIAA1109|ENST00000419325.5	+	122254858,122255130,122257254,122258700,122262763,122263441,122264251,122266782,122271017,122272159,122274342,122275971,122279774,122281535,122286540,122289086,122301299,122304797,122305876,122307948,122309265,122313627,122315461,122316731,122318146,122324426,122325229,122325684	122254955,122255283,122257495,122258843,122262983,122263600,122264427,122266958,122271724,122272405,122274436,122276022,122279981,122281774,122286785,122289192,122301397,122304983,122306045,122308160,122309464,122313687,122315688,122316862,122318270,122324536,122325320,122325784	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	95637100	95637110	95637100	-	RAMPAGE_only	2	2	8	0.181582	2.500000	chr10	95636801	95637054	SINE|MIR|MIR	-	chr10	95625429	95628853	ALDH18A1|ENST00000489386.1	-	95625429,95626702,95627441,95628367,95628680	95625455,95626776,95627586,95628492,95628853	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	99657631	99657794	99657782	-	RAMPAGE_only	8	8	72	1.634242	4.469614	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648199	99679966	MSTRG.22658.6	-	99648199,99650072,99652552,99662815,99663967,99665165,99666712,99666951,99671770,99672579,99672783,99674532,99676114,99679825	99648400,99650232,99660659,99662882,99664095,99665314,99666810,99667065,99671878,99672679,99672915,99674585,99676208,99679966	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	2727374	2727394	2727374	-	RAMPAGE_only	4	5	12	0.272374	3.251629	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2530091	2728451	LOC101927815|NR_125425.1	-	2530091,2595564,2596624,2604780,2674729,2728329	2530166,2595703,2596704,2604930,2674845,2728451	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	217842150	217842174	217842161	-	RAMPAGE_only	3	3	11	0.249676	3.121928	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217841097	217903813	MSTRG.14841.12	-	217841097,217859653,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217903602	217850211,217859701,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217903813	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	28613628	28613646	28613645	-	High_confidence	5	6	12	0.272374	3.251629	chr14	28613407	28613767	LTR|ERVL-MaLR|MLT1I	-	chr14	28592222	28613623	LINC02300|ENST00000549742.1	-	28592222,28612321,28613458	28592565,28612478,28613623	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	4720051	4720083	4720051	+	RAMPAGE_only	7	8	37	0.839819	4.028445	chr17	4719939	4720058	LINE|L2|L2a	-	chr17	4715588	4721138	ARRB2|ENST00000571206.1	+	4715588,4716146,4716411,4717216,4717684,4717887,4718260,4718611,4719282,4720215,4720392,4720585,4720945	4716033,4716191,4716608,4717276,4717752,4718023,4718345,4718684,4719420,4720299,4720472,4720640,4721138	0.864865
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	103890256	103890286	103890285	-	RAMPAGE_only	30	30	67	1.520753	4.922755	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103917669	STN1|ENST00000369764.1	-	103882554,103889071,103892129,103897547,103898876,103900061,103905090,103910526,103917461	103882841,103889144,103892252,103897719,103899000,103900223,103905156,103910622,103917669	0.970149
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	154287420	154287470	154287469	+	High_confidence	42	42	82	1.861220	5.043945	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	0.878049
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	136503082	136503120	136503119	-	RAMPAGE_only	7	7	25	0.567445	4.022055	chr3	136503102	136503268	LINE|L2|L2	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.840000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	74000327	74000351	74000350	+	RAMPAGE_only	6	7	15	0.340467	2.978095	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.933333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	85377104	85377114	85377104	+	High_confidence	3	3	11	0.249676	3.027169	chr2	85377052	85377138	LINE|L2|L2	-	chr2	85376881	85390995	ELMOD3|ENST00000496957.1	+	85376881,85377343,85389750,85390137,85390759	85376916,85377474,85389827,85390265,85390995	0.545455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	883829	883830	883829	+	RAMPAGE_only	7	7	11	0.249676	3.277613	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	753055	911300	MSTRG.5008.6	+	753055,813641,827041,830002,857160,859244,861012,862082,871264,878211,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846,908474	754324,813814,827262,830160,857249,859464,861343,862270,871348,878361,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,908034,911300	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	18706991	18707033	18706996	-	High_confidence	12	12	82	1.861220	5.513540	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18705417	18706129	IGSF22|ENST00000510673.1	-	18705417,18705816	18705617,18706129	0.536585
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	71300084	71300634	71300459	+	RAMPAGE_only	34	41	593	13.459798	6.212203	chrX	71300434	71300519	SINE|Alu|AluSx	-	chrX	71291994	71301168	NONO|ENST00000490044.5	+	71291994,71294218,71296564,71296850,71297376,71297835,71298468,71298706,71299941	71293041,71294528,71296660,71297047,71297461,71297938,71298508,71298816,71301168	0.998314
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	71745881	71745936	71745881	+	High_confidence	29	29	248	5.629055	6.125248	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.895161
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	33021381	33021417	33021416	-	RAMPAGE_only	9	9	36	0.817121	4.329283	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.861111
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	47638936	47638951	47638950	-	RAMPAGE_only	3	4	7	0.158885	2.584963	chr3	47638835	47639155	LINE|L1|L1ME3A	+	chr3	47585271	47701402	MSTRG.16833.2	-	47585271,47590660,47610065,47622206,47635189,47638724,47661293,47662333,47670657,47675474,47676628,47678197,47686048,47689386,47693240,47701277	47588306,47590837,47610327,47622341,47636136,47638780,47661455,47662592,47670717,47675588,47676782,47680508,47686170,47689424,47693300,47701402	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	119504539	119504544	119504539	-	RAMPAGE_only	7	7	12	0.272374	3.459432	chr4	119503954	119504512	LINE|L1|L1PA17	-	chr4	119494394	119627287	PDE5A|NM_033430.2	-	119494394,119501169,119502580,119504535,119505854,119507603,119511046,119519044,119520934,119525548,119538959,119542458,119552549,119553637,119560295,119562832,119565320,119567072,119596522,119606708,119627149	119498738,119501253,119502655,119504599,119505932,119507704,119511134,119519139,119521060,119525695,119539019,119542634,119552637,119553746,119560363,119562970,119565410,119567144,119596612,119607297,119627287	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	123270196	123270219	123270207	-	High_confidence	2	2	10	0.226978	2.947703	chr12	123270153	123270246	DNA|hAT-Ac|OldhAT1	+	chr12	123260969	123270234	CDK2AP1|NM_001270433.1	-	123260969,123265195,123267184,123270176	123261803,123265322,123267282,123270234	0.700000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	240022172	240022236	240022172	-	RAMPAGE_only	34	34	107	2.428665	3.838597	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.990654
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	16835019	16835047	16835019	-	RAMPAGE_only	2	3	9	0.204280	2.750000	chr4	16834941	16835049	SINE|MIR|MIRc	-	chr4	16588709	16898562	MSTRG.18228.14	-	16588709,16595702,16759157,16826429,16897951	16588832,16595875,16759260,16897895,16898562	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	110884878	110884887	110884886	+	High_confidence	3	3	7	0.158885	2.807355	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110884770	110894179	PDCD4|ENST00000481353.5	+	110884770,110887664,110889532,110890555,110894090	110885366,110887886,110889630,110890670,110894179	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	28048446	28048447	28048446	+	High_confidence	88	90	101	2.292478	4.486570	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.960396
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	152347679	152347680	152347679	-	RAMPAGE_only	10	10	10	0.226978	2.846439	chr5	152347584	152347683	DNA|TcMar-Mariner|MADE1	+	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	47080108	47080126	47080125	+	RAMPAGE_only	3	5	11	0.249676	3.095795	chr20	47079987	47080389	LINE|L1|L1ME1	+	chr20	47089238	47096080	EYA2|ENST00000475856.1	+	47089238,47095813	47089381,47096080	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	77159463	77159499	77159498	+	RAMPAGE_only	3	3	18	0.408560	3.419382	chr4	77159547	77159588	LINE|L2|L2a	+	chr4	77158425	77165010	CCNG2|ENST00000509972.1	+	77158425,77159366,77160720,77161479,77161648,77164273	77158670,77159504,77160971,77161558,77161747,77165010	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	154975505	154975546	154975505	+	High_confidence	6	6	33	0.749028	4.184863	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	224523716	224523717	224523716	-	RAMPAGE_only	7	7	10	0.226978	2.721928	chr2	224523355	224524093	LINE|L1|L1MB3	+	chr2	224511437	224557820	MSTRG.14912.13	-	224511437,224513523,224514611,224532823,224557658	224511582,224513638,224532789,224535641,224557820	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	35115804	35115845	35115844	+	High_confidence	7	7	30	0.680934	4.375222	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	22178135	22178153	22178146	+	RAMPAGE_only	6	8	15	0.340467	2.739572	chr18	22177944	22178264	SINE|Alu|AluSp	-	chr18	22172131	22202528	MSTRG.11753.3	+	22172131,22182756,22182939,22200655	22181578,22182844,22183043,22202528	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	52570278	52570307	52570292	+	RAMPAGE_only	2	2	9	0.204280	3.000000	chr13	52569964	52570306	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	121281833	121281851	121281833	+	RAMPAGE_only	2	2	8	0.181582	2.750000	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	52282169	52282210	52282169	+	RAMPAGE_only	3	4	18	0.408560	3.683542	chr10	52282132	52282197	LINE|CR1|L3	+	chr10	52046866	52294176	PRKG1|ENST00000373975.3	+	52046866,52054483,52062536,52081596,52133839,52161888,52251569,52271349,52272391,52280788,52282152,52288725,52288930,52290223,52293801	52046926,52054561,52062631,52081657,52133905,52161963,52251666,52271489,52272481,52280930,52282316,52288848,52288993,52290290,52294176	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	75248185	75248199	75248185	-	High_confidence	7	8	18	0.408560	3.947703	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	63645170	63645171	63645170	+	RAMPAGE_only	15	15	16	0.363165	3.640224	chr3	63645170	63651333	LINE|L1|L1PA4	+	chr3	63652667	63664721	SNTN|ENST00000343837.7	+	63652667,63654761,63659724,63663936	63652797,63654796,63659864,63664721	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	128492000	128492330	128492303	-	High_confidence	39	40	293	6.650457	4.744595	chr6	128492117	128492389	LINE|L2|L2c	+	chr6	128219069	128491857	PTPRK|ENST00000495748.5	-	128219069,128240034,128242520,128322038,128397565,128491731	128219096,128240150,128242602,128322310,128397688,128491857	0.808874
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	79492585	79492596	79492585	+	High_confidence	5	5	19	0.431258	3.683542	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.842105
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	99893444	99893594	99893444	-	High_confidence	9	10	69	1.566148	4.709317	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.985507
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	29420564	29420570	29420569	+	RAMPAGE_only	4	4	9	0.204280	3.000000	chr10	29420498	29420628	LINE|L1|L1MA6	+	chr10	29409571	29422372	SVIL-AS1|ENST00000427063.6	+	29409571,29415356,29420490	29409658,29415412,29422372	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	31183473	31183700	31183527	-	RAMPAGE_only	42	44	303	6.877435	5.718322	chr6	31182432	31184449	LTR|ERV1|Harlequin-int	-	chr6	31164600	31186457	MSTRG.20866.8	-	31164600,31165127,31165570,31165926,31177351	31164867,31165286,31165701,31176688,31186457	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	761096	761120	761114	+	High_confidence	11	12	44	0.998703	4.434888	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.977273
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	31531107	31531108	31531107	-	RAMPAGE_only	4	4	6	0.136187	2.584963	chr21	31531021	31531216	LINE|CR1|CR1-16_AMi	-	chr21	31118415	31558977	TIAM1|ENST00000286827.7	-	31118415,31124521,31127064,31130212,31130889,31135932,31141117,31141324,31146894,31152635,31153065,31154246,31164961,31182420,31187000,31195223,31202907,31210044,31213397,31217552,31223405,31225725,31245487,31251741,31266009,31276731,31339242,31463982,31558926	31120837,31124694,31127152,31130315,31130948,31136041,31141236,31141504,31147003,31152761,31153134,31154426,31165065,31182645,31187087,31195305,31203012,31210215,31213472,31217699,31223591,31225950,31245660,31252189,31266983,31276908,31339422,31464035,31558977	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	53875774	53875810	53875793	+	RAMPAGE_only	6	6	17	0.385863	3.263933	chr19	53875567	53875864	SINE|Alu|AluSx1	+	chr19	53869405	53876435	MYADM|ENST00000391769.2	+	53869405,53869753,53873527	53869598,53869838,53876435	0.941176
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	2672739	2672740	2672739	+	High_confidence	7	7	11	0.249676	3.459432	chr17	2672787	2673082	SINE|Alu|AluSq2	+	chr17	2673664	2682348	PAFAH1B1|ENST00000571495.1	+	2673664,2676504,2680163,2681728	2674288,2676606,2680320,2682348	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	77633922	77633954	77633922	-	High_confidence	6	6	20	0.453956	3.984184	chrX	77633858	77633928	SINE|MIR|MIR3	+	chrX	77620427	77633865	ATRX|ENST00000624403.1	-	77620427,77633206,77633565	77620532,77633384,77633865	0.950000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	52947415	52947457	52947456	+	RAMPAGE_only	6	10	21	0.476654	3.558519	chr5	52947497	52947571	LINE|L1|L1M5	+	chr5	52934240	52956491	MSTRG.19464.16	+	52934240,52936274,52939589,52947344,52952406	52935941,52937514,52945035,52947461,52956491	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	24456011	24456013	24456011	-	RAMPAGE_only	4	8	9	0.204280	3.000000	chr12	24455738	24456072	LTR|ERVL|LTR16A	+	chr12	23532296	24562449	SOX5|NM_001261414.1	-	23532296,23536452,23543210,23546315,23604386,23640811,23665443,23734683,23740866,23755637,23845982,23895792,24213342,24277215,24368562,24407484,24562332	23534522,23536669,23543384,23546424,23604533,23640897,23665564,23734752,23741039,23755724,23846193,23896024,24213417,24277312,24368639,24407566,24562449	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	86453386	86453387	86453386	-	High_confidence	8	8	9	0.204280	2.750000	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015268	86453387	MAPK10|ENST00000641657.1	-	86015268,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453387	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	203799237	203799279	203799237	+	High_confidence	7	7	31	0.703632	4.573557	chr1	203799077	203799888	DNA|hAT-Ac|OldhAT1	+	chr1	203799334	203854118	ZBED6|ENST00000545588.5	+	203799334,203816925,203818569,203828298,203829450,203829779,203830122,203831660,203833790,203837965,203840305,203847183,203848330,203849710,203850514,203851056,203852140	203803016,203817124,203818689,203828422,203829654,203829896,203830203,203831771,203833853,203838064,203840374,203847687,203848407,203850026,203850681,203851124,203854118	0.967742
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	108330408	108330418	108330417	+	RAMPAGE_only	3	3	8	0.181582	2.750000	chr11	108330466	108330549	LINE|L2|L2c	+	chr11	108332761	108336408	ATM|ENST00000533979.5	+	108332761,108333885,108334968,108335844,108336183	108332900,108333968,108335109,108335961,108336408	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	175528111	175528216	175528215	+	RAMPAGE_only	5	5	27	0.612841	3.782122	chr5	175528208	175528480	DNA|TcMar-Tigger|MER2	+	chr5	175478497	175529742	SFXN1|NM_001322977.1	+	175478497,175492094,175509031,175510108,175511450,175512110,175513462,175516613,175521918,175522374,175526637	175478667,175492267,175509202,175510207,175511526,175512196,175513590,175516663,175521968,175522422,175529742	0.962963
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	62520829	62520841	62520840	+	RAMPAGE_only	4	4	9	0.204280	3.000000	chr17	62520890	62521168	SINE|Alu|AluJr	+	chr17	62479024	62615481	TLK2|NM_006852.3	+	62479024,62481120,62520772,62522203,62523133,62524235,62536169,62552301,62553662,62560015,62565000,62573214,62576708,62578476,62580110,62586134,62596584,62600650,62602041,62606129,62608040,62612391	62479290,62481206,62520844,62522273,62523177,62524331,62536337,62552397,62553755,62560126,62565137,62573367,62576775,62578574,62580192,62586226,62596674,62600820,62602180,62606241,62608148,62615481	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	4726205	4726213	4726212	-	High_confidence	3	3	7	0.158885	2.807355	chr9	4725911	4728263	DNA|TcMar-Tigger|Tigger1	-	chr9	4709555	4726227	AK3|NM_001199856.1	-	4709555,4718418,4719134,4722505,4726082	4713096,4718537,4719307,4722625,4726227	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	14586317	14586339	14586318	-	RAMPAGE_only	2	3	9	0.204280	2.500000	chr16	14585980	14586276	SINE|Alu|AluJb	-	chr16	14576071	14584791	PARN|ENST00000562715.1	-	14576071,14580873,14582180,14584346,14584748	14576276,14580943,14582291,14584422,14584791	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	23705502	23705531	23705502	-	RAMPAGE_only	2	2	9	0.204280	3.000000	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	159231694	159231748	159231694	+	RAMPAGE_only	5	5	27	0.612841	3.077694	chr2	159231677	159231761	DNA|TcMar-Mariner|MARNA	-	chr2	159224392	159232659	TANC1|ENST00000496406.1	+	159224392,159229577	159228896,159232659	0.962963
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	200857126	200857149	200857148	-	RAMPAGE_only	2	2	8	0.181582	2.521641	chr2	200857055	200857331	SINE|Alu|AluSx	+	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	28393373	28393402	28393401	-	RAMPAGE_only	4	4	16	0.363165	3.280639	chr21	28393336	28393715	LTR|ERVL|LTR18A	+	chr21	28116093	28228667	LOC101927973|NR_126012.1	-	28116093,28163601,28170077,28212239,28225883,28228361	28119874,28163717,28170143,28212348,28225991,28228667	0.687500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	70394883	70394884	70394883	+	High_confidence	19	19	19	0.431258	3.787144	chr6	70394625	70395013	LTR|ERV1|MER48	+	chr6	70394886	70399417	AL365226.2|ENST00000418403.1	+	70394886,70395229,70399214	70395043,70395266,70399417	0.736842
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	28674853	28674856	28674853	-	High_confidence	7	8	17	0.385863	3.852169	chr21	28674675	28675025	LTR|ERVL-MaLR|MLT1A0	-	chr21	28439345	28674848	AF165147.1|ENST00000433310.6	-	28439345,28446289,28577218,28626584,28674646	28444809,28446472,28577380,28626676,28674848	0.588235
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	113375453	113375495	113375494	-	High_confidence	3	3	9	0.204280	2.725481	chr9	113375358	113375529	SINE|MIR|MIR3	-	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	41871712	41871755	41871754	-	RAMPAGE_only	5	5	26	0.590143	3.700440	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.807692
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	54196391	54196394	54196391	-	High_confidence	2	2	7	0.158885	2.584963	chr1	54196181	54196491	SINE|Alu|AluJb	-	chr1	54190550	54196404	CYB5RL|ENST00000497820.1	-	54190550,54195418,54196368	54190896,54195715,54196404	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	150125450	150125484	150125450	-	RAMPAGE_only	4	4	18	0.408560	3.836592	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	169124611	169124630	169124629	+	RAMPAGE_only	3	3	13	0.295071	3.584963	chr1	169124508	169124714	SINE|MIR|MIRb	+	chr1	169107906	169127399	ATP1B1|ENST00000494797.1	+	169107906,169111369,169124883,169127223	169108163,169111498,169125039,169127399	0.769231
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	155679929	155679930	155679929	-	High_confidence	12	12	12	0.272374	2.855389	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	149277374	149277401	149277394	-	High_confidence	5	6	13	0.295071	3.418296	chr3	149277201	149277437	SINE|MIR|MIR	+	chr3	149229430	149276664	CPHL1P|ENST00000461341.2	-	149229430,149230738,149241361,149244253,149245662,149247367,149249021,149249958,149252845,149254117,149255929,149256396,149257457,149266865,149269084,149269819,149270749,149273502,149275462,149276509	149229687,149230901,149241501,149244455,149245769,149247496,149249161,149250169,149253058,149254268,149256141,149256537,149257589,149267035,149269101,149270062,149270920,149273715,149275702,149276664	0.846154
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	79393560	79393661	79393643	-	RAMPAGE_only	19	22	124	2.814528	5.889365	chr13	79393527	79394632	LTR|ERV1|MER50-int	+	chr13	79319953	79405788	RBM26|ENST00000267229.11	-	79319953,79322348,79334343,79337101,79341122,79342663,79344247,79344668,79354438,79355219,79358273,79359574,79365577,79366054,79366632,79368729,79370944,79371841,79377378,79378788,79405703	79320710,79322462,79334430,79337302,79341227,79342831,79344322,79344794,79354561,79355384,79358433,79359686,79365718,79366195,79366872,79368990,79371162,79371930,79377515,79378907,79405788	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	11345415	11345442	11345441	-	High_confidence	6	6	16	0.363165	3.625000	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11179758	11345407	ROCK2|NM_001321643.1	-	11179758,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345407	0.812500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	132579733	132579745	132579733	+	High_confidence	5	5	10	0.226978	2.947703	chr5	132579709	132579830	LINE|L1|L1ME4a	-	chr5	132579744	132588807	RAD50|ENST00000487596.1	+	132579744,132587561,132587923,132588686	132580066,132587690,132588089,132588807	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	101731413	101731433	101731413	+	High_confidence	9	9	20	0.453956	3.721612	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.850000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	52548858	52548886	52548881	-	RAMPAGE_only	4	4	20	0.453956	3.721612	chr15	52548772	52548988	DNA|TcMar-Tigger|MamRep434	-	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	0.950000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	12249181	12249215	12249181	+	RAMPAGE_only	2	2	9	0.204280	2.750000	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	106278172	106278185	106278184	+	High_confidence	9	9	18	0.408560	4.058814	chr9	106277947	106278267	LINE|RTE-X|L4_C_Mam	+	chr9	106278391	106604795	LINC01505|ENST00000435485.5	+	106278391,106279100,106499486,106500356,106558471,106588376,106603755	106278472,106279190,106499612,106500505,106558583,106588464,106604795	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	94683463	94683502	94683483	+	High_confidence	96	96	201	4.562259	6.004127	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_000772.2	+	94683493,94687769,94688124,94694916,94706783,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94706960,94720537,94724533,94733438,94736190	0.980100
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	12662795	12662796	12662795	-	RAMPAGE_only	9	9	11	0.249676	3.095795	chr3	12662589	12662820	LINE|L2|L2c	+	chr3	12600198	12664125	MSTRG.16525.10	-	12600198,12600387,12606200,12608765,12609232,12611949,12618514,12663812	12600279,12604289,12606299,12608923,12609335,12612062,12618747,12664125	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	4780689	4780732	4780731	+	RAMPAGE_only	4	4	22	0.499352	4.201841	chr17	4780509	4780749	LINE|L2|L2c	-	chr17	4771891	4783211	TM4SF5|ENST00000270560.3	+	4771891,4780788,4782502,4782853,4783113	4772099,4780869,4782639,4783037,4783211	0.954545
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	17282914	17282940	17282939	+	RAMPAGE_only	5	5	16	0.363165	3.640224	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	24244665	24244666	24244665	+	RAMPAGE_only	20	20	24	0.544747	4.152391	chr8	24244484	24244842	LTR|ERVL-MaLR|THE1B	+	chr8	24294039	24336099	ADAM28|NR_130709.1	+	24294039,24299973,24309893,24310162,24311360,24320235,24321217,24323833,24326553,24329984,24331149,24332659,24335445	24294195,24300077,24309970,24310241,24311437,24320307,24321289,24324003,24326635,24330115,24331327,24332749,24336099	0.583333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	1581095	1581116	1581096	-	RAMPAGE_only	5	8	16	0.363165	3.640224	chr16	1580906	1581055	SINE|MIR|MIR	-	chr16	1510429	1584263	IFT140|ENST00000565298.5	-	1510429,1518215,1519880,1520130,1520601,1523517,1523827,1524783,1525230,1525886,1557934,1561984,1563996,1566160,1568216,1571406,1580758,1583313,1584216	1511150,1518357,1520047,1520343,1520808,1523700,1524695,1524916,1525326,1526796,1558134,1562116,1564162,1566291,1568334,1571534,1580850,1583386,1584263	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	19980433	19980440	19980433	-	High_confidence	5	5	11	0.249676	2.921928	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975430	19980439	PLA2G2A|NM_001161728.1	-	19975430,19978014,19978379,19978733,19980361	19975843,19978121,19978524,19978879,19980439	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	146481723	146481747	146481746	+	High_confidence	4	4	11	0.249676	3.027169	chr5	146481542	146481807	DNA|TcMar-Tigger|Tigger19a	+	chr5	146481175	146511508	TCERG1|ENST00000506524.5	+	146481175,146483539,146492919,146498535,146503374,146503823,146507027,146507872,146509144,146510066,146510440	146482727,146483629,146493038,146498686,146503539,146504006,146507207,146507956,146509245,146510160,146511508	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	30579233	30579279	30579278	-	RAMPAGE_only	3	4	17	0.385863	3.616875	chr7	30578715	30579253	LTR|ERV1|LOR1-int	-	chr7	30577511	30585972	GARS-DT|ENST00000454922.6	-	30577511,30579230,30584710,30585329	30578091,30579314,30584808,30585972	0.529412
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	50131130	50131151	50131139	-	High_confidence	110	110	362	8.216605	6.365886	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.983425
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	73536354	73536401	73536354	-	RAMPAGE_only	4	4	18	0.408560	3.734522	chr10	73536351	73536426	LINE|L1|L1PBa	+	chr10	73497537	73534770	USP54|ENST00000466048.6	-	73497537,73500654,73504849,73505307,73516374,73520907,73523582,73526646,73529679,73530142,73534599	73499188,73500838,73504990,73505426,73517747,73521027,73523750,73526780,73529911,73530523,73534770	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	238300061	238300109	238300085	-	High_confidence	5	6	34	0.771725	4.657882	chr2	238299957	238300152	LTR|ERVL|ERV3-16A3_I-int	+	chr2	238295391	238300620	AC012485.2|ENST00000437372.2	-	238295391,238298639,238299801,238300511	238295740,238298776,238300188,238300620	0.558824
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	20595816	20595831	20595816	+	RAMPAGE_only	3	3	10	0.226978	2.921928	chr4	20595845	20596093	LINE|L1|L1MA2	+	chr4	20253815	20619183	SLIT2|ENST00000503837.5	+	20253815,20256671,20257867,20268809,20467751,20480715,20486199,20488818,20490802,20491760,20510494,20511065,20519381,20523759,20524013,20528948,20531983,20533571,20539440,20541452,20542493,20546030,20548487,20549056,20550826,20553804,20567261,20567517,20568864,20589643,20595696,20596414,20598264,20610012,20616909,20617438,20618767	20253994,20256743,20257939,20268881,20467823,20480787,20486271,20488982,20490814,20491899,20510566,20511137,20519453,20523903,20524177,20529099,20532058,20533715,20539584,20541619,20542626,20546099,20548559,20549128,20550898,20553968,20567386,20567615,20569004,20589737,20595834,20596655,20598395,20610167,20617198,20617650,20619183	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	13386132	13386133	13386132	+	RAMPAGE_only	36	37	42	0.953308	4.850534	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.785714
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	27121399	27121426	27121399	-	RAMPAGE_only	3	3	18	0.408560	3.572469	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	0.944444
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	98733157	98733274	98733186	+	High_confidence	6	8	63	1.429962	4.629374	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.841270
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	26395705	26395706	26395705	+	High_confidence	13	13	13	0.295071	2.565448	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	159428333	159428417	159428356	-	RAMPAGE_only	27	30	123	2.791830	6.082984	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.699187
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	29735222	29735275	29735252	-	High_confidence	14	14	44	0.998703	4.726144	chr8	29735013	29735262	SINE|MIR|MIR	-	chr8	29673921	29735223	LINC00589|ENST00000518623.5	-	29673921,29677909,29726155,29735170	29674443,29678004,29726423,29735223	0.727273
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	232816632	232816649	232816648	+	RAMPAGE_only	5	5	13	0.295071	3.251629	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.846154
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	47743720	47743728	47743725	+	High_confidence	14	14	34	0.771725	4.393062	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.735294
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	95541307	95541324	95541307	-	RAMPAGE_only	5	7	14	0.317769	3.521641	chr5	95540961	95541265	SINE|Alu|AluSp	-	chr5	95528834	95537107	TTC37|ENST00000503279.1	-	95528834,95530088,95536816,95537042	95529102,95530229,95536925,95537107	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	58312332	58312350	58312344	+	RAMPAGE_only	6	6	16	0.363165	3.323231	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	77285007	77285008	77285007	-	RAMPAGE_only	4	6	7	0.158885	2.584963	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	10710671	10710687	10710686	-	RAMPAGE_only	2	3	8	0.181582	2.521641	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10699226	10722911	YBX3|ENST00000540447.5	-	10699226,10701253,10701959,10709907,10715693,10718087,10719079,10722849	10699654,10701353,10704148,10713333,10715783,10718121,10719143,10722911	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	111284831	111284843	111284841	-	High_confidence	5	9	15	0.340467	3.664498	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.733333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	169776770	169776771	169776770	+	RAMPAGE_only	9	9	9	0.204280	3.169925	chr5	169776604	169776958	LTR|ERVL-MaLR|THE1D	+	chr5	169703948	170083379	DOCK2|ENST00000523351.6	+	169703948,169708168,169711934,169714027,169714359,169716212,169717383,169718656,169747395,169759704,169761518,169803057,169840756,169983067,169985827,169996085,170008496,170008687,170018959,170027862,170034398,170036514,170041054,170042012,170045815,170047509,170050255,170055304,170056683,170057579,170067509,170069136,170075946,170077709,170078974,170080162,170081841,170082795	169704075,169708267,169712007,169714211,169714457,169716302,169717484,169718791,169747504,169759775,169761625,169803206,169840852,169983166,169985922,169996164,170008597,170008746,170019108,170027948,170034555,170036555,170041145,170042132,170045905,170047614,170050397,170055386,170056768,170057666,170067686,170069220,170076084,170077837,170079146,170080283,170081984,170083379	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	101823629	101823653	101823652	+	High_confidence	5	5	15	0.340467	3.521641	chr14	101823598	101823757	SINE|MIR|MIRc	-	chr14	101824161	101824478	PPP2R5C|ENST00000607042.1	+	101824161	101824478	0.600000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	111622043	111622070	111622043	+	RAMPAGE_only	5	5	13	0.295071	2.918296	chr11	111621928	111622237	LINE|L1|L1MEc	-	chr11	111602442	111635389	MSTRG.4746.2	+	111602442,111616242	111602698,111635389	0.769231
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	30508157	30508212	30508157	+	RAMPAGE_only	5	5	20	0.453956	3.076103	chr8	30507969	30508353	LTR|ERVL-MaLR|MLT1B	+	chr8	30387207	30547483	MSTRG.23508.8	+	30387207,30477798,30479314,30504285,30535064	30474856,30477837,30479377,30534760,30547483	0.950000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	42404759	42404770	42404769	+	High_confidence	5	5	14	0.317769	3.521641	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404779	42411942	CAPN3|ENST00000569136.5	+	42404779,42405925,42408210,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42405943,42408324,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42411942	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	2759787	2759824	2759797	+	High_confidence	6	6	17	0.385863	3.381580	chr16	2759705	2759830	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.882353
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	16712868	16712933	16712889	-	High_confidence	20	22	77	1.747731	5.627575	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.935065
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	151369291	151369341	151369320	-	High_confidence	3	3	18	0.408560	3.852169	chr1	151369225	151369333	DNA|hAT-Tip100|MER91A	-	chr1	151365572	151369841	SELENBP1|ENST00000424475.5	-	151365572,151365767,151366274,151366721,151368198,151369441,151369712	151365684,151365846,151366453,151366904,151368319,151369554,151369841	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	39657322	39657337	39657336	+	High_confidence	29	29	117	2.655643	5.950290	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657326	39662889	B3GALT5|ENST00000380618.5	+	39657326,39659752,39660559	39657599,39659912,39662889	0.598291
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	132848651	132848701	132848700	+	High_confidence	30	47	225	5.107006	6.506251	chr10	132848295	132848877	LTR|ERV1|MER61F	+	chr10	132848709	132849304	MSTRG.3593.1	+	132848709	132849304	0.973333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	201115965	201116014	201116013	+	High_confidence	4	4	23	0.522049	3.447262	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.956522
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	45292685	45292745	45292685	+	High_confidence	4	5	28	0.635539	3.892725	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.964286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	31184063	31184345	31184184	-	RAMPAGE_only	33	45	841	19.088853	4.422395	chr6	31182432	31184449	LTR|ERV1|Harlequin-int	-	chr6	31164600	31186457	MSTRG.20866.8	-	31164600,31165127,31165570,31165926,31177351	31164867,31165286,31165701,31176688,31186457	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	50185872	50185885	50185884	+	High_confidence	7	7	14	0.317769	3.182006	chr13	50180295	50186330	LINE|L1|L1PA2	-	chr13	50185879	50528064	DLEU1|ENST00000485007.5	+	50185879,50390197,50415088,50433412,50527865	50186070,50390291,50415202,50433550,50528064	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	50737456	50737472	50737471	+	RAMPAGE_only	3	3	12	0.272374	3.188722	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50719628	50751004	LUC7L3|ENST00000508482.5	+	50719628,50740305,50741101,50741656,50743705,50744651,50745719,50746541,50750500,50750723	50719831,50740345,50741246,50741731,50743810,50744813,50746003,50746702,50750641,50751004	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	218549809	218549818	218549809	-	RAMPAGE_only	6	6	12	0.272374	3.418296	chr2	218549464	218549763	SINE|Alu|AluSx	-	chr2	218454814	218568291	USP37|ENST00000418019.5	-	218454814,218455579,218457091,218459789,218463305,218466009,218474629,218476839,218479649,218482069,218485663,218488303,218495759,218497733,218498025,218509978,218529955,218534608,218546220,218546918,218549808,218553552,218558497,218560819,218562717,218568177	218455017,218455718,218457161,218459905,218463366,218466176,218474885,218476981,218479715,218482234,218485743,218488421,218495950,218497857,218498157,218510140,218530040,218534706,218546298,218547091,218549909,218553724,218558677,218560883,218562813,218568291	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	11930318	11930332	11930331	+	RAMPAGE_only	4	4	9	0.204280	2.500000	chr11	11930205	11930423	DNA|hAT-Charlie|MER58A	+	chr11	11880185	11956945	MSTRG.3825.5	+	11880185,11884466,11891967,11897596,11902714,11903262,11920341,11929433,11930043,11930695,11933003,11933830,11936302,11938256,11940428,11942334,11947944,11948477,11949888,11950363,11952740,11954896,11955033,11956000	11880380,11884580,11892106,11897693,11902860,11920251,11922891,11929565,11930120,11930751,11933116,11933935,11936510,11938372,11940548,11943112,11948120,11948558,11950004,11950482,11952871,11954944,11955164,11956945	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	143965102	143965121	143965120	-	High_confidence	10	10	19	0.431258	3.419382	chr6	143964544	143965292	LTR|Gypsy|MamGyp-int	+	chr6	143940299	143965478	PLAGL1|NM_001317158.1	-	143940299,143960468,143964786	143942663,143960556,143965478	0.789474
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	32402135	32402136	32402135	+	RAMPAGE_only	11	11	11	0.249676	3.277613	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32428121	32774001	MSTRG.7163.6	+	32428121,32433459,32535553,32545229,32577119,32599409,32600628,32678310,32695989,32732453,32735657,32773677	32428565,32433817,32535805,32546999,32577242,32599506,32600792,32678459,32696110,32732600,32735882,32774001	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	108066621	108066641	108066635	+	RAMPAGE_only	2	2	8	0.181582	2.807355	chrX	108066662	108066752	SINE|MIR|MIRc	+	chrX	108064738	108073264	VSIG1|ENST00000485533.1	+	108064738,108066935,108072676,108073249	108064787,108067134,108072832,108073264	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	50579900	50579906	50579900	-	RAMPAGE_only	33	34	56	1.271077	5.481649	chr10	50578916	50580156	LINE|L1|HAL1	+	chr10	50341331	50623977	SGMS1|ENST00000619438.4	-	50341331,50343491,50433475,50460672,50466889,50519830,50590152,50623706	50341434,50344345,50433556,50460814,50466932,50519921,50590247,50623977	0.839286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	96133604	96133626	96133625	+	RAMPAGE_only	5	5	16	0.363165	3.750000	chr10	96133568	96133657	DNA|TcMar-Tigger|Tigger12A	-	chr10	96155342	96163761	ZNF518A|ENST00000534948.2	+	96155342,96156196	96156047,96163761	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	74888847	74888870	74888853	+	RAMPAGE_only	5	5	13	0.295071	2.931209	chr14	74888849	74889003	DNA|hAT-Charlie|MER5A	+	chr14	74885585	74894409	DLST|ENST00000555988.1	+	74885585,74889094,74889274,74889877,74891055,74892833,74893347,74894311	74885634,74889147,74889349,74889952,74891193,74892986,74893424,74894409	0.538462
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	25244078	25244401	25244109	-	High_confidence	22	23	452	10.259407	5.300764	chr1	25244059	25244116	SINE|Alu|Alu	-	chr1	25242248	25244105	RSRP1|ENST00000569495.5	-	25242248,25242538,25243549	25242426,25242705,25244105	0.867257
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	144533092	144533193	144533112	+	RAMPAGE_only	10	11	42	0.953308	4.916127	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.785714
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	176411447	176411459	176411458	-	RAMPAGE_only	11	15	25	0.567445	4.175736	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.840000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	133161720	133161721	133161720	+	RAMPAGE_only	5	5	7	0.158885	2.807355	chr5	133161528	133161832	LTR|ERVL-MaLR|MLT1D	+	chr5	133160437	133224303	AC010307.2|ENST00000509051.1	+	133160437,133207835,133208264,133224083	133160512,133207928,133208342,133224303	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	166850060	166850125	166850124	+	RAMPAGE_only	6	9	37	0.839819	4.815623	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.972973
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	48753676	48753677	48753676	-	High_confidence	34	34	36	0.817121	4.829966	chr19	48753519	48753902	LTR|ERVK|LTR13A	-	chr19	48752611	48753660	FUT1|ENST00000601931.5	-	48752611,48753324	48753122,48753660	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	166850329	166850353	166850329	+	RAMPAGE_only	4	4	8	0.181582	3.000000	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	88126327	88126328	88126327	-	RAMPAGE_only	6	6	9	0.204280	2.750000	chr12	88126179	88126283	LINE|L2|L2a	-	chr12	88093596	88129711	CEP290|ENST00000604024.5	-	88093596,88096887,88102837,88106674,88106995,88109065,88111201,88111693,88114419,88115097,88115477,88117032,88118482,88118642,88120113,88120996,88125245,88126315,88128945,88129693	88093975,88096999,88103011,88106905,88107098,88109181,88111351,88111858,88114562,88115182,88115570,88117145,88118570,88118743,88120276,88121166,88125369,88126438,88129035,88129711	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	50130092	50130121	50130092	-	RAMPAGE_only	7	7	36	0.817121	4.650572	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.972222
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	38354271	38354297	38354271	+	RAMPAGE_only	12	12	19	0.431258	3.836592	chr13	38354306	38354393	LINE|L1|L1M5	+	chr13	38349880	38363619	UFM1|ENST00000239878.8	+	38349880,38349998,38354238,38358092,38359300,38360710	38349921,38350055,38354296,38358132,38359333,38363619	0.578947
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	147397969	147397993	147397992	-	RAMPAGE_only	3	3	6	0.136187	2.584963	chr5	147397984	147398206	LINE|CR1|L3	+	chr5	147393824	147401602	DPYSL3|ENST00000520473.1	-	147393824,147395558,147399081,147400691,147401539	147394123,147395721,147399252,147400833,147401602	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	170743955	170743956	170743955	-	RAMPAGE_only	8	8	9	0.204280	2.500000	chr2	170743777	170744187	LTR|ERVL|LTR52	-	chr2	170723085	170770766	AC007405.1|ENST00000442456.4	-	170723085,170727284,170727658,170730367,170733878,170740631,170770701	170723593,170727328,170727788,170730997,170733994,170741287,170770766	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	95939967	95939990	95939967	-	RAMPAGE_only	2	2	10	0.226978	3.169925	chr13	95939547	95939948	LINE|L1|L1MA8	-	chr13	95801579	95999307	MSTRG.6863.1	-	95801579,95832926,95837085,95853542,95854314,95856157,95859590,95860787,95877278,95877697,95884490,95887891,95890861,95894561,95895179,95902853,95925679,95927027,95927212,95936923,95939956,95947036,95947995,95949334,95970111,95972579,95983803,95986332,95989972,95996062,95999210	95801812,95833053,95837202,95853657,95854475,95856340,95859675,95867423,95877364,95877856,95884680,95887971,95890964,95894657,95900938,95903060,95925774,95927126,95927336,95937088,95940091,95947172,95948081,95949454,95970262,95972671,95983864,95986432,95990073,95996135,95999307	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	45585833	45585839	45585833	-	RAMPAGE_only	3	3	9	0.204280	2.725481	chr17	45585678	45585861	SINE|Alu|AluSp	+	chr17	45508108	45550335	LRRC37A4P|ENST00000581296.2	-	45508108,45508266,45508484,45510243,45513184,45513867,45517860,45519227,45521306,45539162,45539891,45542763,45545604,45547726	45508160,45508406,45508539,45510293,45513289,45515379,45518148,45519372,45521425,45539243,45539963,45542835,45545676,45550335	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	74000281	74000299	74000298	+	RAMPAGE_only	5	5	13	0.295071	3.251629	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	147839194	147839240	147839237	-	High_confidence	368	402	969	21.994172	6.689358	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.753354
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	106985346	106985397	106985396	-	High_confidence	4	4	21	0.476654	3.503702	chr12	106985200	106985407	LINE|L2|L2c	+	chr12	106978455	106985286	MTERF2|ENST00000550736.1	-	106978455,106980620,106985114	106978771,106980713,106985286	0.523810
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	129586596	129586624	129586596	-	RAMPAGE_only	4	4	15	0.340467	3.039149	chr3	129586391	129586559	LINE|L2|L2c	-	chr3	129570871	129606597	MSTRG.17441.13	-	129570871,129571039,129571508,129571676,129572608,129572841,129573593,129574335,129575468,129575765,129578328,129583566,129584124,129584384,129585951,129586171,129586587,129589350,129605328,129605607	129570935,129571303,129571599,129571844,129572748,129572941,129573745,129574490,129575562,129575855,129578433,129583669,129584233,129584562,129586081,129586272,129586719,129589527,129605496,129606597	0.866667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	143964791	143964808	143964791	-	High_confidence	5	5	17	0.385863	3.750000	chr6	143964544	143965292	LTR|Gypsy|MamGyp-int	+	chr6	143940337	143964868	PLAGL1|ENST00000367572.3	-	143940337,143960468,143964786	143942663,143960556,143964868	0.529412
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	88282787	88282815	88282809	+	RAMPAGE_only	5	5	16	0.363165	3.875000	chr5	88282583	88283084	DNA|TcMar-Tigger|Tigger7	-	chr5	88268896	88298852	MSTRG.19768.2	+	88268896,88269467	88269027,88298852	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	89904128	89904165	89904160	+	RAMPAGE_only	3	3	14	0.317769	3.182006	chr16	89904174	89904222	LINE|CR1|L3	+	chr16	89895989	89911350	TCF25|ENST00000570116.6	+	89895989,89898556,89898766,89900634,89904117,89906193,89907242,89910590,89911079	89896083,89898649,89898872,89900794,89905096,89906284,89907322,89910663,89911350	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	45379229	45379234	45379233	+	RAMPAGE_only	3	4	7	0.158885	2.521641	chr13	45378752	45379338	LTR|ERV1|HERVE-int	-	chr13	45341512	45391737	TPT1-AS1|ENST00000524062.5	+	45341512,45344304,45377060,45378529,45379194,45383090,45389734,45391031	45341614,45344446,45377215,45378671,45380001,45383235,45389820,45391737	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	3380960	3380961	3380960	+	High_confidence	94	95	100	2.269780	5.924564	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.520000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	68553782	68553825	68553782	+	RAMPAGE_only	3	3	22	0.499352	3.146439	chr11	68553666	68553867	DNA|TcMar-Tigger|Tigger4a	-	chr11	68537815	68613354	MSTRG.4343.21	+	68537815,68544837,68548066,68551120,68556097,68564302,68566998,68569747,68571039,68574108,68575957,68587926,68590659,68591575,68596096,68600340,68601862,68603341,68609903,68613065	68537891,68545024,68548204,68556032,68558679,68564432,68567166,68569897,68571104,68574224,68576043,68588024,68590714,68591706,68596218,68600494,68601969,68603492,68610023,68613354	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	117454948	117454966	117454949	+	High_confidence	40	57	104	2.360572	5.748604	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.855769
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	200857033	200857079	200857078	-	RAMPAGE_only	5	6	14	0.317769	3.392747	chr2	200857055	200857331	SINE|Alu|AluSx	+	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	32601284	32601334	32601284	+	RAMPAGE_only	7	7	36	0.817121	4.614369	chr12	32601190	32601318	SINE|MIR|MIRb	-	chr12	32582378	32644751	FGD4|ENST00000494977.1	+	32582378,32598496,32600409,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624658,32624975,32625653,32633548,32637649,32638654,32640275,32642760,32644593	32582467,32598586,32600509,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32624751,32625068,32625779,32633689,32637855,32638795,32640453,32642842,32644751	0.972222
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	188225403	188225446	188225403	+	High_confidence	7	8	21	0.476654	4.142664	chr3	188225342	188225427	SINE|MIR|MIR3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	17374741	17374746	17374743	+	High_confidence	11	15	28	0.635539	4.423252	chr7	17374638	17374768	DNA|hAT-Charlie|MER5B	+	chr7	17374866	17466664	KCCAT333|ENST00000419463.1	+	17374866,17448880,17450994,17466151	17375055,17448948,17451061,17466664	0.785714
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	64990589	64990616	64990589	-	High_confidence	3	3	9	0.204280	2.750000	chr7	64990323	64990915	LTR|ERV1|LTR4	-	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	37031633	37031634	37031633	+	RAMPAGE_only	8	8	10	0.226978	2.947703	chr3	37031587	37031713	SINE|MIR|MIRc	+	chr3	37025830	37047740	MLH1|ENST00000616768.4	+	37025830,37028783,37040185,37042267,37047518	37026007,37028932,37040294,37042331,37047740	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	24930628	24930660	24930639	+	High_confidence	94	96	536	12.166023	6.559387	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930642	24932983	MSTRG.15224.1	+	24930642,24931346	24930774,24932983	0.934701
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	57532054	57532081	57532054	-	RAMPAGE_only	2	2	10	0.226978	3.121928	chr12	57531960	57532134	LINE|RTE-BovB|MamRTE1	+	chr12	57530310	57547141	DCTN2|ENST00000434715.7	-	57530310,57532014,57532212,57532571,57532732,57532983,57533237,57533952,57534291,57535055,57535483,57535748,57538518,57541363,57546027,57547027	57530775,57532106,57532315,57532643,57532810,57533022,57533303,57534097,57534452,57535154,57535545,57535845,57538524,57541372,57546096,57547141	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	24346923	24346977	24346962	+	RAMPAGE_only	96	146	765	17.363820	7.007300	chr8	24346931	24347022	LINE|L1|L1MC1	-	chr8	24341651	24359018	MSTRG.23437.14	+	24341651,24343100,24343505,24349863,24351231	24341757,24343181,24343588,24349972,24359018	0.971242
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	108018836	108018849	108018843	+	RAMPAGE_only	2	2	9	0.204280	2.500000	chrX	108018632	108020157	LINE|L1|L1M2	-	chrX	108044969	108079184	VSIG1|ENST00000415430.7	+	108044969,108058037,108061427,108066935,108072676,108073249,108076076,108077047	108045179,108058201,108061535,108067134,108072832,108073369,108076218,108079184	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	68736374	68736375	68736374	-	RAMPAGE_only	7	7	7	0.158885	2.521641	chr4	68735466	68736444	LTR|ERV1|MER61-int	-	chr4	68704599	68712498	AC147055.1|ENST00000509261.1	-	68704599,68708647,68710039,68712312	68704874,68708855,68710120,68712498	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	37187475	37187484	37187475	+	RAMPAGE_only	4	4	8	0.181582	3.000000	chr9	37187210	37187548	DNA|hAT-Charlie|MER1B	-	chr9	37144931	37356980	ZCCHC7|ENST00000488607.5	+	37144931,37147361,37302187,37304187,37305543,37327798,37349356,37354709,37356834	37144997,37147445,37302231,37304313,37305714,37327834,37349452,37354824,37356980	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	99208106	99208119	99208118	-	High_confidence	14	19	37	0.839819	4.329283	chr7	99208098	99208244	SINE|Alu|AluSx3	-	chr7	99173573	99207506	KPNA7|ENST00000327442.6	-	99173573,99177919,99181882,99184928,99188299,99193018,99195069,99196083,99203105,99207400	99173794,99178066,99182065,99185162,99188563,99193101,99195338,99196166,99203240,99207506	0.891892
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	76516663	76516713	76516688	+	RAMPAGE_only	3	4	23	0.522049	4.106603	chr9	76516620	76517014	LTR|ERV1|MER110A	-	chr9	76459282	76651203	GCNT1|ENST00000648797.1	+	76459282,76460059,76515527,76516513,76527815,76564377,76565688,76605849,76609248,76631396,76642193,76644717,76649952	76459305,76460177,76515669,76516776,76527895,76564612,76565815,76605991,76609342,76631495,76642286,76644979,76651203	0.782609
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	95208482	95208500	95208482	+	RAMPAGE_only	37	37	78	1.770429	5.515355	chr1	95208181	95208611	LINE|L1|L1ME3A	+	chr1	95234154	95247225	RWDD3|NM_001278248.1	+	95234154,95239776,95244210,95246541,95246755	95234315,95239909,95244698,95246657,95247225	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	78245687	78245688	78245687	-	High_confidence	12	12	12	0.272374	2.792481	chr15	78245271	78246702	LTR|ERV1|LTR12C	-	chr15	78170913	78245688	ACSBG1|ENST00000560817.5	-	78170913,78173592,78174384,78178613,78179549,78180754,78181968,78182465,78182704,78245268	78171529,78173839,78174524,78178831,78179780,78180936,78182145,78182615,78182785,78245688	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	39810023	39810099	39810033	-	High_confidence	60	60	207	4.698445	6.325548	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.526570
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	96155884	96155942	96155923	+	High_confidence	6	6	29	0.658236	3.865765	chr10	96155915	96156029	SINE|MIR|MIR3	-	chr10	96155342	96163761	ZNF518A|ENST00000534948.2	+	96155342,96156196	96156047,96163761	0.931034
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	85715507	85715526	85715525	+	RAMPAGE_only	5	5	11	0.249676	2.913977	chr15	85715056	85715544	LINE|L1|L1ME4b	-	chr15	85710442	85717391	AKAP13|ENST00000559278.1	+	85710442,85715787,85717289	85710645,85715923,85717391	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	47997432	47997454	47997453	+	RAMPAGE_only	14	14	32	0.726330	4.256565	chr8	47995253	47998768	LTR|ERV1|HERVFH21-int	-	chr8	48008399	48064708	UBE2V2|ENST00000523111.6	+	48008399,48043032,48049852,48060681	48008470,48043181,48049978,48064708	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	41871799	41871820	41871819	-	RAMPAGE_only	6	6	16	0.363165	3.875000	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.812500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	49050030	49050048	49050043	-	RAMPAGE_only	5	5	14	0.317769	3.378783	chr15	49049973	49050165	LTR|ERV1|LTR78	-	chr15	48988637	49046563	SECISBP2L|NM_001193489.1	-	48988637,48996366,48999832,49000876,49009215,49011730,49012647,49016559,49016847,49017547,49019417,49027364,49028143,49028452,49032964,49035333,49037590,49046275	48992926,48996586,48999987,49001097,49009378,49011863,49012817,49016701,49017015,49017628,49019552,49027480,49028168,49028682,49033100,49035658,49037769,49046563	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	5023239	5023307	5023239	-	RAMPAGE_only	21	21	69	1.566148	5.418530	chr10	5023105	5023345	LTR|ERVL-MaLR|MLT1F2	-	chr10	5006461	5017934	AKR1C2|ENST00000604711.1	-	5006461,5007406,5010343,5017899	5006592,5007506,5010653,5017934	0.608696
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	101795876	101795955	101795922	-	RAMPAGE_only	6	7	32	0.726330	4.548394	chr10	101795715	101795873	DNA|hAT-Charlie|MER30	-	chr10	101786133	101799332	MSTRG.3358.6	-	101786133,101787363,101790895,101791353,101792838,101793912,101798841	101786587,101787523,101791088,101791439,101792943,101798154,101799332	0.937500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	95824772	95824847	95824846	-	RAMPAGE_only	4	4	25	0.567445	4.220176	chr2	95824349	95826979	LINE|L1|L1PA10	-	chr2	95807051	95826981	LINC00342|NR_103734.1	-	95807051,95814049,95824200	95807302,95814145,95826981	0.960000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	102449836	102449870	102449836	+	High_confidence	10	10	31	0.703632	4.506891	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.838710
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	122218272	122218277	122218272	-	High_confidence	9	9	17	0.385863	3.875000	chr12	122218031	122218232	DNA|hAT-Charlie|MER58A	-	chr12	122208315	122218289	DIABLO|ENST00000439489.6	-	122208315,122209696,122216487,122216758,122218265	122208577,122209858,122216584,122216869,122218289	0.764706
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	45441877	45441889	45441877	-	High_confidence	11	11	18	0.408560	3.690117	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45430651	45441808	AC025580.1|ENST00000559553.1	-	45430651,45433612,45441780	45430814,45434150,45441808	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	37987981	37987994	37987993	+	High_confidence	139	164	530	12.029836	7.069510	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.739623
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	188153246	188153259	188153250	+	High_confidence	2	2	8	0.181582	2.521641	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	162597807	162597850	162597849	+	High_confidence	10	14	24	0.544747	3.918296	chr1	162597899	162598081	LINE|L1|L1MA7	+	chr1	162597240	162599799	UAP1|ENST00000486089.1	+	162597240,162599270	162597858,162599799	0.791667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	53523890	53523907	53523906	-	High_confidence	4	4	16	0.363165	3.750000	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	97013458	97013507	97013458	+	RAMPAGE_only	2	3	17	0.385863	3.030639	chr5	97013035	97013482	LINE|L2|L2b	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	0.941176
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	32477554	32477583	32477567	+	RAMPAGE_only	5	5	15	0.340467	3.807355	chr2	32477616	32477749	SINE|Alu|AluJb	+	chr2	32436074	32611581	MSTRG.13418.8	+	32436074,32439507,32441328,32442064,32442323,32443490,32445520,32448794,32453807,32463193,32464508,32465064,32467524,32467902,32468436,32469394,32470167,32471013,32473111,32476212,32477367,32478634,32479461,32481319,32482428,32485642,32487646,32488587,32490040,32491424,32493539,32499546,32501712,32502794,32503041,32505004,32507979,32509737,32510525,32512932,32514989,32518253,32518816,32524887,32525463,32529650,32531354,32543240,32545642,32547849,32549312,32575155,32593914,32595033,32597750,32599738,32603005,32607454,32611447	32436184,32439686,32441462,32442226,32442455,32443588,32445668,32448928,32453954,32463381,32464823,32465164,32467739,32468111,32468783,32469614,32470301,32471151,32473239,32476344,32477583,32478818,32479617,32481453,32482582,32485759,32487801,32488714,32490151,32491558,32493667,32500109,32501888,32502891,32503236,32505205,32508259,32509994,32510634,32513154,32515770,32518397,32518946,32525019,32525628,32529824,32531551,32543541,32545860,32548014,32549481,32575366,32594060,32595144,32597968,32599900,32603083,32607643,32611581	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	51196857	51196858	51196857	+	RAMPAGE_only	6	6	6	0.136187	2.584963	chr10	51196355	51196926	DNA|TcMar-Tigger|Tigger9b	-	chr10	51186196	51218446	MSTRG.2907.10	+	51186196	51218446	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	123617785	123617864	123617863	+	High_confidence	7	7	26	0.590143	3.997953	chr12	123617854	123617910	LINE|RTE-X|L4_A_Mam	-	chr12	123618015	123620422	DDX55|ENST00000421670.3	+	123618015,123619431,123619963	123618837,123619724,123620422	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	185620090	185620098	185620092	-	RAMPAGE_only	4	8	14	0.317769	3.026987	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.642857
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	65570509	65570536	65570521	+	High_confidence	68	108	337	7.649160	6.818771	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570521	65615757	MSTRG.2954.5	+	65570521,65571424,65572934,65585484,65615635	65570759,65571579,65573056,65585567,65615757	0.614243
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	172307496	172307501	172307496	+	RAMPAGE_only	5	5	9	0.204280	3.000000	chr3	172307537	172307684	SINE|Alu|AluJr	+	chr3	172329073	172335814	FNDC3B|ENST00000494000.1	+	172329073,172333088,172334943	172330715,172333175,172335814	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	215381479	215381509	215381508	-	High_confidence	3	3	7	0.158885	2.807355	chr2	215381472	215381758	SINE|Alu|AluSg	-	chr2	215375632	215381329	FN1|ENST00000474036.1	-	215375632,215376497,215378174,215379129,215380810	215375718,215376674,215378262,215379317,215381329	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	202014670	202014677	202014670	+	RAMPAGE_only	3	3	7	0.158885	2.807355	chr1	202014595	202014906	SINE|Alu|AluSx1	-	chr1	202011369	202015657	AL691482.3|ENST00000504773.1	+	202011369,202014885	202011584,202015657	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	40772059	40772060	40772059	+	RAMPAGE_only	19	19	19	0.431258	3.536887	chr19	40771932	40772225	SINE|Alu|AluJo	-	chr19	40775176	40777493	MIA|NM_001202553.1	+	40775176,40775536,40775751,40776968,40777396	40775211,40775669,40775885,40777079,40777493	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	110884976	110885016	110884978	+	High_confidence	6	11	39	0.885214	4.972835	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110884770	110894179	PDCD4|ENST00000481353.5	+	110884770,110887664,110889532,110890555,110894090	110885366,110887886,110889630,110890670,110894179	0.871795
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	112039521	112039537	112039531	-	RAMPAGE_only	7	7	13	0.295071	3.251629	chr12	112039466	112039729	LINE|L2|L2c	+	chr12	112027787	112108785	NAA25|ENST00000552527.5	-	112027787,112033232,112039228,112042038,112043087,112043624,112047664,112048291,112053557,112054387,112060269,112061180,112068879,112071894,112074674,112075677,112078187,112078633,112081059,112087682,112090725,112093050,112108715	112029653,112033379,112040578,112042104,112043211,112043868,112047790,112048443,112053657,112054568,112060359,112061388,112068992,112072064,112074764,112075789,112078266,112078741,112081134,112087801,112090864,112093136,112108785	0.769231
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	70590308	70590329	70590328	+	RAMPAGE_only	8	8	31	0.703632	4.309035	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.903226
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	20676155	20676162	20676161	-	High_confidence	35	35	59	1.339170	5.679253	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.847458
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	84515097	84515131	84515130	-	RAMPAGE_only	6	6	17	0.385863	2.939829	chr7	84514894	84515339	LTR|ERVL-MaLR|MLT1G3	-	chr7	84194528	84492724	SEMA3A|ENST00000424555.5	-	84194528,84307206,84371823,84492459	84194668,84307292,84371900,84492724	0.705882
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	8681676	8681677	8681676	+	High_confidence	12	12	13	0.295071	3.251629	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.769231
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	26956577	26956614	26956577	-	High_confidence	2	2	13	0.295071	3.392747	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.692308
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	20658416	20658427	20658416	+	High_confidence	5	6	11	0.249676	3.277613	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658378	20995955	MSTRG.24411.2	+	20658378,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.727273
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	203082994	203082995	203082994	+	High_confidence	5	5	7	0.158885	2.807355	chr2	203082717	203083034	LTR|ERVL-MaLR|MLT1J	-	chr2	203083236	203097599	NBEAL1|ENST00000483147.1	+	203083236,203084462,203097546	203083525,203084569,203097599	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	143965032	143965063	143965047	-	High_confidence	2	2	9	0.204280	2.750000	chr6	143964544	143965292	LTR|Gypsy|MamGyp-int	+	chr6	143940299	143965478	PLAGL1|NM_001317156.1	-	143940299,143947984,143960468,143964786	143942663,143948460,143960542,143965478	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	194462333	194462369	194462339	-	High_confidence	2	2	10	0.226978	2.725481	chr3	194462324	194462634	DNA|hAT-Charlie|MER1B	+	chr3	194402676	194462212	ATP13A3|ENST00000642744.1	-	194402676,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194459470,194459788,194460657,194462139	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194459541,194459971,194460831,194462212	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	86369000	86369029	86369028	+	RAMPAGE_only	7	7	19	0.431258	3.787144	chr8	86368776	86369052	LINE|L2|L2c	+	chr8	86374040	86467476	WWP1|ENST00000265428.4	+	86374040,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	0.842105
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	76920089	76920128	76920127	+	RAMPAGE_only	11	11	25	0.567445	4.418296	chr11	76919910	76920629	LTR|ERVL|LTR41	+	chr11	76860934	77021346	ACER3|ENST00000525861.5	+	76860934,76926556,76957464,76958978,76976288,76985642,76990538,76994155,76998762,77015015,77016674,77019730,77020273	76861079,76926667,76957586,76959031,76976341,76985724,76990574,76994226,76998821,77015117,77016779,77019776,77021346	0.520000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	73999827	73999837	73999827	+	RAMPAGE_only	2	3	8	0.181582	2.750000	chrX	73999206	73999999	LINE|L1|L1M3de	+	chrX	73944341	74000491	JPX|ENST00000414209.5	+	73944341,73944583,73946998,73998767,73998953	73944465,73944662,73947374,73998844,74000491	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	160537040	160537068	160537052	+	High_confidence	15	16	62	1.407264	5.199111	chr1	160536842	160537065	LTR|ERVL|LTR33A_	+	chr1	160537072	160571458	AL138930.1|ENST00000446952.1	+	160537072,160570938	160537187,160571458	0.532258
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	643625	643636	643635	-	High_confidence	23	24	71	1.611544	4.944490	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.535211
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	2798793	2798810	2798807	+	High_confidence	4	4	12	0.272374	3.251629	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	3795750	3795789	3795750	+	High_confidence	28	30	146	3.313879	5.957645	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.993151
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	70162714	70162749	70162714	-	High_confidence	2	2	11	0.249676	2.846439	chr10	70162681	70163236	DNA|TcMar-Tigger|Tigger1	+	chr10	70150203	70163031	SAR1A|ENST00000373238.5	-	70150203,70153837,70157763,70161003,70161618,70161857,70162689	70152592,70153969,70157867,70161069,70161738,70161931,70163031	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	67886471	67886518	67886517	+	High_confidence	15	15	49	1.112192	3.961250	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.979592
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	96934454	96934465	96934454	+	RAMPAGE_only	7	7	22	0.499352	3.820889	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.863636
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	23284549	23284588	23284549	-	High_confidence	7	7	16	0.363165	3.452820	chr1	23284355	23284528	SINE|Alu|FAM	-	chr1	23281308	23285518	LINC01355|NR_110616.1	-	23281308,23285109	23284410,23285518	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	12790305	12790609	12790469	+	RAMPAGE_only	54	55	590	13.391704	5.345670	chr12	12790469	12790527	DNA|DNA|MER135	+	chr12	12785606	12791466	APOLD1|NM_030817.2	+	12785606,12786908	12785694,12791466	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	48484161	48484162	48484161	+	RAMPAGE_only	6	7	8	0.181582	2.521641	chr2	48483987	48484326	LTR|ERVL|LTR47B4	+	chr2	48440796	48515386	PPP1R21|ENST00000294952.12	+	48440796,48451007,48454594,48458125,48459753,48460094,48461137,48464936,48465492,48471086,48471278,48474682,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48441010,48451076,48454741,48458227,48459918,48460153,48461232,48464989,48465642,48471188,48471367,48474819,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515386	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	11775137	11775174	11775173	-	RAMPAGE_only	2	2	7	0.158885	2.807355	chr16	11775090	11775400	SINE|Alu|AluSg	+	chr16	11767436	11776520	ZC3H7A|ENST00000576009.1	-	11767436,11768314,11769030,11770782,11774235,11774979,11776451	11767578,11768501,11769095,11770987,11774519,11775013,11776520	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	4239742	4239749	4239748	-	High_confidence	5	6	14	0.317769	3.392747	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.642857
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	111284874	111284875	111284874	-	High_confidence	20	21	29	0.658236	4.280226	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.896552
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	19430479	19430494	19430479	+	RAMPAGE_only	3	3	7	0.158885	2.807355	chr16	19430397	19430533	LINE|RTE-X|L4_B_Mam	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	37147690	37147697	37147696	-	High_confidence	3	4	7	0.158885	2.584963	chr2	37147318	37147662	LINE|L1|L1PA4	-	chr2	37107272	37147806	EIF2AK2|ENST00000405334.5	-	37107272,37107473,37109193,37114730,37119958,37122505,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687	37107395,37107527,37109295,37114859,37120139,37122664,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147806	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	36911669	36911701	36911700	-	RAMPAGE_only	3	3	7	0.158885	2.584963	chr20	36911497	36911692	SINE|MIR|MIRb	-	chr20	36903952	36946780	SAMHD1|ENST00000645444.1	-	36903952,36911217,36916721,36916948,36919363,36927181,36930759,36935028,36941038,36946737	36905503,36912552,36916830,36917096,36919519,36927252,36930875,36935189,36941111,36946780	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	4782306	4782359	4782358	+	High_confidence	10	10	36	0.817121	4.815623	chr3	4782402	4782508	DNA|hAT-Charlie|MER117	+	chr3	4782339	4788458	ITPR1|ENST00000481415.2	+	4782339,4783815,4787946	4782741,4783920,4788458	0.944444
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	22658854	22658875	22658874	+	RAMPAGE_only	3	3	9	0.204280	2.500000	chr12	22658494	22658954	LTR|ERV1|MER31A	-	chr12	22643888	22684551	MSTRG.5315.7	+	22643888,22659013,22661062,22673499,22684482	22644022,22659154,22671355,22673660,22684551	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	68736340	68736344	68736343	-	RAMPAGE_only	8	9	13	0.295071	3.418296	chr4	68735466	68736444	LTR|ERV1|MER61-int	-	chr4	68704599	68712498	AC147055.1|ENST00000509261.1	-	68704599,68708647,68710039,68712312	68704874,68708855,68710120,68712498	0.769231
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	22658774	22658829	22658792	+	RAMPAGE_only	5	6	26	0.590143	3.893661	chr12	22658494	22658954	LTR|ERV1|MER31A	-	chr12	22643888	22684551	MSTRG.5315.6	+	22643888,22661062,22671271,22673499,22684482	22659154,22661205,22671355,22673660,22684551	0.846154
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	92536651	92536718	92536703	-	High_confidence	26	31	83	1.883918	5.348151	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.939759
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	13419689	13419730	13419689	-	RAMPAGE_only	7	7	21	0.476654	3.321104	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	37288915	37288936	37288935	+	RAMPAGE_only	2	2	7	0.158885	2.584963	chr3	37288931	37289044	LINE|L1|L1ME1	-	chr3	37282182	37366750	GOLGA4|ENST00000437131.1	+	37282182,37286013,37289234,37294978,37296086,37298832,37299287,37302184,37315419,37319062,37321730,37323587,37328415,37328962,37335052,37337142,37337665,37340123,37347192,37355100,37366079	37282272,37286061,37289291,37295077,37296219,37299020,37299371,37302332,37315598,37319194,37321886,37327825,37328537,37329093,37335166,37337163,37337734,37340199,37347296,37355187,37366750	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	57267756	57267782	57267781	+	RAMPAGE_only	6	6	17	0.385863	3.734522	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.823529
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	98891750	98891781	98891780	-	High_confidence	3	3	8	0.181582	3.000000	chr4	98891322	98891802	LINE|L1|L1MB2	+	chr4	98887162	98891571	EIF4E|ENST00000505829.1	-	98887162,98887888,98891236	98887192,98887952,98891571	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	154038408	154038409	154038408	-	High_confidence	7	7	11	0.249676	3.121928	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	153991702	154038866	FAM114A2|ENST00000522858.5	-	153991702,153994918,153997802,154002250,154002846,154011240,154026398,154027175,154028148,154029488,154033790,154034277,154034743,154038292	153993110,153994972,153997875,154002390,154002969,154011320,154026522,154027334,154028283,154029580,154033883,154034377,154034967,154038866	0.545455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	76774918	76774953	76774952	+	High_confidence	5	5	19	0.431258	3.905765	chr6	76774716	76775166	LTR|ERVL|MER70A	+	chr6	76774982	76775860	AL590426.2|ENST00000607287.1	+	76774982,76775167	76775075,76775860	0.578947
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	69847585	69847609	69847608	+	RAMPAGE_only	2	3	6	0.136187	2.584963	chr2	69847652	69847734	LINE|L1|L1M5	+	chr2	69829641	69881396	GMCL1|ENST00000282570.3	+	69829641,69837546,69839456,69840941,69843148,69844130,69847542,69849651,69854822,69861277,69864899,69869718,69871744,69878908	69830152,69837670,69839553,69841039,69843261,69844196,69847627,69849742,69854960,69861347,69864975,69869864,69871832,69881396	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	2726956	2727244	2726962	+	High_confidence	100	100	442	10.032429	6.630716	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.769231
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	36122225	36122265	36122242	-	High_confidence	5	5	18	0.408560	3.969816	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	27030090	27030155	27030154	+	High_confidence	11	11	39	0.885214	4.540402	chr12	27030124	27030371	SINE|Alu|AluJr	-	chr12	27030259	27030673	MED21|ENST00000621885.1	+	27030259	27030673	0.871795
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrY	4036474	4036497	4036474	+	High_confidence	2	3	12	0.272374	3.418296	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	37921841	37921861	37921860	+	High_confidence	7	7	12	0.272374	3.459432	chr15	37919314	37922492	LINE|L1|L1PB1	-	chr15	37921938	37936918	TMCO5A|ENST00000560841.5	+	37921938,37935256,37936313,37936846	37922203,37935348,37936463,37936918	0.583333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	100834589	100834708	100834707	+	High_confidence	13	14	73	1.656940	4.910669	chr14	100834648	100834738	LINE|L2|L2b	+	chr14	100833763	100861021	MEG3|ENST00000524035.5	+	100833763,100836166,100845457,100860690	100836075,100836300,100845533,100861021	0.958904
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	232785307	232785332	232785331	+	RAMPAGE_only	3	4	7	0.158885	2.807355	chr2	232785239	232785670	LTR|ERVL-MaLR|MLT1F2	-	chr2	232768101	232790915	GIGYF2|ENST00000455139.5	+	232768101,232787149,232790697	232768259,232787329,232790915	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	2867795	2867851	2867850	+	High_confidence	8	8	29	0.658236	4.606739	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.896552
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	17809738	17809793	17809772	-	High_confidence	8	8	33	0.749028	3.340032	chr4	17809627	17810145	LTR|ERV1|MER34C2	-	chr4	17793497	17810711	MSTRG.18234.1	-	17793497	17810711	0.939394
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	51366183	51366212	51366211	-	RAMPAGE_only	6	6	13	0.295071	3.022055	chr1	51366072	51366367	SINE|Alu|AluJb	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.846154
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	80059918	80059933	80059918	+	High_confidence	242	273	531	12.052534	5.363082	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.971751
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	6866552	6866553	6866552	-	High_confidence	6	6	9	0.204280	2.750000	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	2073100	2073120	2073100	+	High_confidence	2	2	7	0.158885	2.521641	chr9	2072786	2073156	LTR|ERVL-MaLR|MLT1N2	-	chr9	2073096	2081860	SMARCA2|ENST00000635129.1	+	2073096,2073565,2076228,2077628,2081831	2073342,2073623,2076329,2077776,2081860	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	225786846	225786860	225786859	+	RAMPAGE_only	4	5	10	0.226978	2.641604	chr1	225786845	225787132	SINE|Alu|AluJo	-	chr1	225777812	225790466	MSTRG.2322.1	+	225777812,225783299,225786861,225788605	225778012,225783368,225788203,225790466	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	138212993	138213004	138212993	-	High_confidence	2	3	6	0.136187	2.584963	chr5	138212862	138212945	LINE|CR1|L3	-	chr5	138200926	138213215	CDC23|ENST00000482948.5	-	138200926,138201342,138202112,138206546,138212990,138213151	138201239,138201448,138202155,138206684,138213063,138213215	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	110	110	110	2.496758	4.233465	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	128428040	128428064	128428063	+	High_confidence	3	3	9	0.204280	3.000000	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428069	128519394	AC108062.1|ENST00000511497.5	+	128428069,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519394	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	11225897	11225915	11225905	-	High_confidence	3	4	13	0.295071	3.418296	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.615385
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	195519398	195519413	195519412	-	High_confidence	5	5	9	0.204280	3.169925	chr3	195519409	195519644	LINE|L1|L1ME4a	+	chr3	195516675	195519639	PPP1R2|ENST00000460437.1	-	195516675,195519017	195516942,195519639	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	86695073	86695120	86695073	-	RAMPAGE_only	5	5	20	0.453956	3.984184	chr2	86695006	86695595	LTR|ERV1|LTR10A	+	chr2	86603392	86623877	RNF103|NM_005667.3	-	86603392,86612158,86620329,86622660	86605418,86612274,86620469,86623877	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	282754	282778	282765	-	RAMPAGE_only	3	4	13	0.295071	3.084963	chr19	282643	282733	SINE|MIR|MIR1_Amn	-	chr19	281045	288537	PLPP2|ENST00000621795.1	-	281045,282133,282751	281537,282310,288537	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	38255214	38255246	38255241	+	RAMPAGE_only	5	5	26	0.590143	4.293661	chr21	38254981	38255285	LINE|L2|L2c	-	chr21	38256697	38301826	KCNJ15|NM_001276436.1	+	38256697,38257045,38291605,38296925,38299243	38256787,38257185,38291747,38297023,38301826	0.653846
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	51973605	51973621	51973605	+	RAMPAGE_only	4	4	8	0.181582	2.750000	chr8	51973413	51973909	LINE|L1|L1M4	-	chr8	51961457	52022974	AC064807.2|ENST00000521188.1	+	51961457,52022415	51961570,52022974	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	4580863	4580877	4580863	+	RAMPAGE_only	4	4	16	0.363165	3.375000	chr12	4580796	4580870	LINE|RTE-X|L4_C_Mam	+	chr12	4590071	4597173	DYRK4|NR_104115.1	+	4590071,4590329,4591159,4593001,4596148,4596588	4590207,4590554,4591298,4593165,4596445,4597173	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	45600416	45600431	45600416	+	RAMPAGE_only	1	1	7	0.158885	2.584963	chr1	45600220	45601560	LINE|L1|L1ME1	-	chr1	45584064	45618247	NASP|ENST00000351223.7	+	45584064,45591222,45602254,45604935,45606481,45613168,45614095,45614292,45615012,45615304,45616336,45616625,45617462,45618060	45584205,45591270,45602365,45605016,45606591,45613248,45614181,45614366,45615201,45615471,45616393,45616703,45617591,45618247	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	109250832	109250864	109250832	+	RAMPAGE_only	3	3	12	0.272374	2.732159	chr6	109245218	109251251	LINE|L1|L1PA2	-	chr6	109236613	109270514	LOC100996634|NM_001277339.1	+	109236613,109239327,109242178,109254447,109255370,109257545,109261888,109264800,109267807,109270038	109236780,109239520,109242306,109254648,109255492,109257774,109262091,109264956,109267901,109270514	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	30576657	30576728	30576673	-	High_confidence	4	4	21	0.476654	4.106603	chr7	30576480	30576831	LTR|ERVL-MaLR|THE1B	-	chr7	30574422	30576742	GARS-DT|ENST00000584023.1	-	30574422,30576563	30574881,30576742	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	1467679	1467736	1467699	-	High_confidence	39	42	85	1.929313	5.187152	chr20	1467673	1468159	LTR|ERV1|LTR10B	+	chr20	1442161	1467692	NSFL1C|ENST00000216879.8	-	1442161,1445665,1452492,1453030,1454212,1454966,1458199,1464328,1466719	1443911,1445830,1452630,1453140,1454305,1455132,1458274,1464426,1467692	0.988235
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	65430347	65431245	65430452	+	RAMPAGE_only	112	114	2711	61.533746	7.320135	chr11	65430444	65430516	DNA|hAT-Charlie|Charlie4z	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998525
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	52345928	52345951	52345928	+	RAMPAGE_only	4	4	17	0.385863	3.690117	chr12	52345903	52346014	SINE|MIR|MIRc	-	chr12	52344218	52348178	KRT89P|ENST00000621314.1	+	52344218,52346171,52347262,52348000	52344429,52346232,52347357,52348178	0.705882
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	7913248	7913268	7913248	-	RAMPAGE_only	61	64	146	3.313879	6.113684	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7847611	7853491	UTS2|NM_021995.2	-	7847611,7849639,7850811,7852900,7853306	7847882,7849683,7850922,7852923,7853491	0.561644
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	24284171	24284182	24284181	+	RAMPAGE_only	2	2	7	0.158885	2.584963	chr13	24284180	24284220	LINE|CR1|L3	+	chr13	24270687	24303904	SPATA13|ENST00000399949.6	+	24270687,24284134,24286213,24286764,24288998,24290651,24294738,24297362,24300400,24302597	24270912,24284271,24286393,24286950,24289178,24290884,24294868,24297735,24300475,24303904	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	67999545	67999575	67999545	-	High_confidence	3	3	12	0.272374	2.913977	chr11	67999398	67999517	SINE|MIR|MIR3	-	chr11	67991103	67999194	UNC93B1|ENST00000610659.4	-	67991103,67996771,67997674,67998358,67999172	67991362,67996784,67997799,67998452,67999194	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	96205290	96205333	96205306	+	RAMPAGE_only	4	4	26	0.590143	4.501629	chr6	96205317	96205369	LINE|L2|L2a	+	chr6	96102006	96215612	MSTRG.21369.5	+	96102006,96110686,96114038,96121004,96203147	96107950,96110798,96114127,96121121,96215612	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	41480789	41480795	41480789	-	RAMPAGE_only	4	4	9	0.204280	2.750000	chr21	41480630	41480937	SINE|Alu|AluSx1	-	chr21	41466008	41507982	TMPRSS2|ENST00000458356.5	-	41466008,41467733,41468395,41470647,41471805,41473324,41476576,41479171,41480475,41488393,41489506,41494355,41498118,41507949	41466153,41467886,41468538,41470743,41471981,41473496,41476620,41479282,41480602,41488513,41489593,41494578,41498189,41507982	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	107398374	107398421	107398374	-	RAMPAGE_only	4	4	20	0.453956	4.021928	chr7	107398304	107398642	DNA|hAT-Charlie|MER1B	+	chr7	107201554	107564040	COG5|ENST00000347053.7	-	107201554,107210525,107211098,107230614,107236449,107248395,107258272,107281299,107283570,107298141,107324439,107362032,107362307,107372594,107412501,107527236,107548110,107548277,107554284,107557975,107563802	107203630,107210605,107211225,107230691,107236687,107248499,107258383,107281399,107283732,107298346,107324521,107362110,107362420,107372760,107412632,107527357,107548180,107548332,107554342,107558115,107564040	0.950000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	99408485	99408519	99408485	-	RAMPAGE_only	3	4	11	0.249676	3.321928	chr6	99408390	99408561	SINE|MIR|MIRb	-	chr6	99401459	99425258	MSTRG.21383.5	-	99401459,99402539,99406030,99408080,99409172,99410740,99412550,99414571,99416348,99425214	99401630,99404702,99406168,99408271,99409344,99410964,99412739,99414690,99416428,99425258	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	73230652	73230653	73230652	+	High_confidence	5	5	8	0.181582	3.000000	chr10	73230593	73230965	LINE|L2|L2c	-	chr10	73230472	73231306	FAM149B1|ENST00000607940.1	+	73230472	73231306	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	28055066	28055077	28055076	-	RAMPAGE_only	3	4	8	0.181582	2.521641	chr21	28054935	28055104	LTR|ERV1|LTR78	-	chr21	27925902	28082955	MSTRG.15729.1	-	27925902	28082955	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	59651208	59651265	59651214	+	RAMPAGE_only	8	8	62	1.407264	5.143983	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.854839
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	120472037	120472092	120472037	-	RAMPAGE_only	3	3	13	0.295071	3.084963	chr9	120471976	120472122	LINE|L1|L1ME4a	-	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.846154
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	86482561	86482578	86482577	+	RAMPAGE_only	18	18	31	0.703632	4.456565	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.709677
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	102431237	102431260	102431237	-	High_confidence	4	4	28	0.635539	4.363713	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	91179462	91179526	91179462	-	High_confidence	1697	1743	7439	168.848962	7.513739	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.937492
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	24387472	24387473	24387472	-	High_confidence	6	6	9	0.204280	2.947703	chr8	24386908	24387825	LTR|ERVK|HERVK22-int	-	chr8	24295813	24387515	AC120193.1|ENST00000518988.5	-	24295813,24296153,24300884,24387160	24296057,24296250,24300929,24387515	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	12195916	12195925	12195916	+	High_confidence	4	4	9	0.204280	2.750000	chr11	12195751	12196592	LINE|L2|L2	-	chr11	12195944	12208146	MICAL2|ENST00000527195.1	+	12195944,12204249,12208022	12196200,12204457,12208146	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	70503086	70503112	70503098	+	RAMPAGE_only	3	4	11	0.249676	2.846439	chr6	70503057	70503130	LINE|CR1|X6A_LINE	+	chr6	70482132	70504960	FAM135A|ENST00000425415.2	+	70482132,70486166,70491033,70502635	70482154,70486244,70491083,70504960	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	62600241	62600242	62600241	-	High_confidence	7	7	11	0.249676	2.921928	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	32910509	32910533	32910509	-	RAMPAGE_only	2	2	8	0.181582	3.000000	chr15	32910419	32910514	LINE|CR1|L3	-	chr15	32899806	32902040	FMN1|ENST00000558711.1	-	32899806,32901910	32900252,32902040	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	12356414	12356415	12356414	+	High_confidence	8	8	9	0.204280	2.500000	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12356350	12510346	VPS13D|ENST00000646411.1	+	12356350,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12356524,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	143964980	143964994	143964992	-	RAMPAGE_only	3	5	10	0.226978	3.169925	chr6	143964544	143965292	LTR|Gypsy|MamGyp-int	+	chr6	143941283	143968950	MSTRG.21709.13	-	143941283,143947984,143960468,143966157,143968906	143942663,143948460,143964818,143966198,143968950	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	127218869	127218931	127218878	-	High_confidence	27	27	116	2.632945	6.339961	chr8	127218788	127218864	SINE|MIR|MIR	-	chr8	127185606	127218925	CASC19|ENST00000641523.1	-	127185606,127187784,127188044,127202041,127203162,127208605,127208856,127218809	127185770,127187884,127188115,127202152,127203220,127208682,127209717,127218925	0.612069
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	38494455	38494475	38494455	-	High_confidence	2	3	7	0.158885	2.521641	chr22	38494251	38494474	SINE|MIR|MIR	-	chr22	38493360	38495046	DDX17|ENST00000497196.5	-	38493360,38494020,38494629,38494885	38493771,38494131,38494802,38495046	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	52955040	52955041	52955040	+	RAMPAGE_only	18	18	18	0.408560	2.621353	chr6	52955078	52955376	SINE|Alu|AluSz6	+	chr6	52995619	52995950	RF00100|ENST00000365328.1	+	52995619	52995950	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	9950248	9950249	9950248	+	RAMPAGE_only	4	4	7	0.158885	2.807355	chr18	9950041	9950258	LINE|L2|L2c	-	chr18	9947593	9951353	VAPA|ENST00000577539.1	+	9947593	9951353	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	48362679	48362680	48362679	+	RAMPAGE_only	4	5	7	0.158885	2.807355	chr2	48362726	48363918	DNA|TcMar-Tigger|Tigger3b	+	chr2	48346216	48375565	FOXN2|ENST00000616844.1	+	48346216,48346532,48359046,48362642,48373291,48374919	48346530,48346751,48359147,48362707,48373360,48375565	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	81154211	81154248	81154213	-	High_confidence	8	12	35	0.794423	4.138502	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.971429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	92579322	92579374	92579322	-	RAMPAGE_only	7	7	25	0.567445	4.418296	chr7	92579142	92579278	SINE|Alu|FLAM_C	-	chr7	92565507	92577717	FAM133B|ENST00000494079.1	-	92565507,92569822,92575770,92577102,92577654	92566061,92569915,92575821,92577195,92577717	0.760000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	99937889	99937911	99937910	+	RAMPAGE_only	22	28	97	2.201687	5.713181	chr10	99937898	99938057	SINE|MIR|MIRc	+	chr10	99927208	99958998	DNMBP-AS1|NR_024130.2	+	99927208,99928159,99955673,99956481,99956788	99927299,99928240,99955832,99956591,99958998	0.536082
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	52891327	52891328	52891327	-	High_confidence	7	7	11	0.249676	3.095795	chr19	52891172	52891371	SINE|Alu|AluSz	+	chr19	52876171	52891346	ZNF320|NM_207333.2	-	52876171,52888126,52890240,52891228	52881983,52888253,52890328,52891346	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	65570465	65570468	65570465	+	High_confidence	6	6	11	0.249676	2.721928	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570451	65615757	LINC01515|ENST00000601979.5	+	65570451,65572934,65585484,65585664,65615635	65570545,65573056,65585567,65585802,65615757	0.545455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	233012637	233012684	233012637	+	High_confidence	28	33	111	2.519456	4.877649	chr2	233012609	233012781	DNA|hAT-Tip100|MER45A	+	chr2	233012613	233015885	AC106876.1|ENST00000409905.1	+	233012613,233013139,233015706	233012969,233013247,233015885	0.963964
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	102368772	102368806	102368787	+	RAMPAGE_only	2	2	13	0.295071	3.584963	chr10	102368824	102368910	SINE|MIR|MIRc	+	chr10	102245531	102382899	GBF1|ENST00000369983.3	+	102245531,102258928,102260049,102344050,102351255,102351842,102352457,102353599,102358038,102358505,102359269,102360183,102361021,102361717,102362474,102363255,102363709,102365396,102366382,102367084,102367477,102368217,102368738,102369210,102369710,102369860,102370173,102370383,102370706,102375358,102376271,102376559,102376934,102379283,102379520,102379852,102380248,102380505,102381126,102382055	102245781,102259034,102260116,102344182,102351374,102351951,102352518,102353654,102358186,102358729,102359435,102360395,102361120,102361912,102362664,102363396,102363798,102365599,102366506,102367210,102367560,102368454,102368832,102369387,102369775,102369984,102370245,102370478,102370860,102375584,102376432,102376800,102377140,102379434,102379651,102379954,102380362,102380686,102381255,102382899	0.846154
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	184339459	184339460	184339459	-	High_confidence	62	64	80	1.815824	4.960296	chr4	184339404	184339941	LTR|ERV1|MER41B	-	chr4	184334762	184339565	MSTRG.19163.1	-	184334762	184339565	0.675000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	85717905	85717956	85717955	-	RAMPAGE_only	4	4	22	0.499352	3.913977	chr11	85717779	85717976	SINE|MIR|MIRc	+	chr11	85694290	85726468	SYTL2|ENST00000389959.8	-	85694290,85696182,85697978,85700514,85704857,85707428,85709330,85711112,85714412,85717482,85718789,85720857,85724031	85695340,85696388,85698078,85700593,85705028,85707531,85709500,85711232,85714507,85717726,85718843,85720959,85726468	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	15782803	15782814	15782803	-	High_confidence	3	3	8	0.181582	3.000000	chr16	15782761	15782860	DNA|hAT-Tip100|MER91C	+	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	195696423	195696424	195696423	+	High_confidence	6	6	6	0.136187	2.584963	chr3	195696374	195696623	LINE|L1|L1PA7	+	chr3	195696436	195708504	MUC20-OT1|ENST00000620737.3	+	195696436,195699029,195708133	195696589,195699207,195708504	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	47581686	47581702	47581686	+	RAMPAGE_only	1	1	6	0.136187	2.584963	chr6	47581585	47581703	DNA|hAT-Charlie|MER3	-	chr6	47579393	47627263	MSTRG.21155.6	+	47579393,47582002,47595860,47599300,47606164,47607926,47609122,47612472,47624185	47580900,47582065,47596026,47599443,47606277,47608028,47609304,47612536,47627263	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	102822160	102822200	102822199	-	RAMPAGE_only	3	3	14	0.317769	3.180833	chr7	102822109	102822217	SINE|5S-Deu-L2|AmnSINE1	+	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	69838807	69838808	69838807	+	High_confidence	5	5	7	0.158885	2.521641	chr16	69838688	69838832	LINE|CR1|X7A_LINE	+	chr16	69838736	69941741	WWP2|NM_001270453.1	+	69838736,69840125,69842023,69871803,69888038,69908760,69917708,69925429,69929447,69930129,69931151,69931508,69931801,69933969,69935852,69936311,69937117,69937547,69939026,69939340,69939840	69838889,69840263,69842120,69871931,69888249,69908850,69917883,69925484,69929529,69930258,69931227,69931580,69931890,69934129,69935986,69936452,69937238,69937652,69939123,69939413,69941741	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	43167230	43167241	43167230	-	RAMPAGE_only	7	7	24	0.544747	3.675311	chr17	43166028	43167245	LTR|ERV1|Harlequin-int	-	chr17	43148367	43170316	AC060780.1|ENST00000635600.1	-	43148367,43159422,43166979,43170125	43148783,43159727,43167849,43170316	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	109112927	109112933	109112927	+	RAMPAGE_only	3	3	8	0.181582	2.807355	chr12	109112836	109113146	DNA|hAT-Charlie|MER58B	-	chr12	109111217	109125594	AC007637.1|ENST00000541704.2	+	109111217,109113094,109125260	109111472,109113415,109125594	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	28090339	28090372	28090339	+	High_confidence	6	6	17	0.385863	3.250000	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.941176
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	85378112	85378113	85378112	-	High_confidence	209	220	222	5.038912	4.283583	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.977477
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	53953933	53953973	53953933	-	RAMPAGE_only	3	5	19	0.431258	3.721612	chr20	53953927	53954294	LTR|ERVL-MaLR|MLT1K	+	chr20	53944782	53995929	BCAS1|ENST00000422805.1	-	53944782,53953431,53957431,53975388,53985286,53995011,53995891	53944996,53953695,53957497,53975430,53985499,53995056,53995929	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	64990064	64990101	64990064	-	High_confidence	2	2	9	0.204280	2.947703	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	120124439	120124463	120124462	+	High_confidence	3	3	11	0.249676	3.121928	chr8	120124361	120124487	DNA|hAT-Charlie|MER5A	+	chr8	120125107	120373575	COL14A1|NM_021110.3	+	120125107,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120278110,120278434,120279934,120280710,120280920,120283635,120285860,120289607,120297510,120300731,120310008,120313931,120315532,120315943,120332140,120332663,120341324,120342379,120345374,120367170,120369329,120371151	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120278234,120278578,120280099,120280749,120281059,120283778,120285970,120289766,120297588,120300818,120310062,120314027,120315586,120315997,120332194,120332735,120341360,120342446,120345563,120367248,120369485,120373575	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	24244622	24244633	24244622	+	RAMPAGE_only	17	23	48	1.089495	4.969274	chr8	24244484	24244842	LTR|ERVL-MaLR|THE1B	+	chr8	24294039	24359018	ADAM28|ENST00000265769.8	+	24294039,24299973,24309893,24310162,24311360,24313387,24320235,24321217,24323833,24326553,24329984,24331149,24332659,24335445,24339465,24341597,24343100,24343505,24349863,24351231,24351986,24353769,24354383	24294195,24300077,24309970,24310241,24311437,24313580,24320307,24321289,24324003,24326635,24330115,24331327,24332749,24335641,24339568,24341757,24343181,24343584,24349972,24351310,24352052,24353832,24359018	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	67884427	67884428	67884427	+	RAMPAGE_only	6	7	7	0.158885	2.584963	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	241090009	241090032	241090009	-	RAMPAGE_only	2	2	8	0.181582	2.521641	chr2	241089704	241090027	DNA|TcMar-Tigger|Tigger3b	-	chr2	241087203	241096070	MTERF4|ENST00000488567.5	-	241087203,241089979,241094276,241094596	241089365,241090044,241094429,241096070	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	220140275	220140288	220140277	+	High_confidence	4	7	13	0.295071	3.546594	chr1	220140323	220140598	SINE|Alu|AluSz6	+	chr1	220140180	220143344	IARS2|ENST00000467924.1	+	220140180,220141802,220142943	220140289,220141948,220143344	0.615385
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	57451514	57451576	57451531	+	RAMPAGE_only	9	10	67	1.520753	4.705234	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.970149
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	79867898	79867904	79867901	-	RAMPAGE_only	3	3	9	0.204280	2.947703	chr12	79867652	79868026	LTR|ERVL-MaLR|THE1C	+	chr12	79828370	79872872	PPP1R12A|ENST00000548318.1	-	79828370,79832331,79845301,79848787,79872807	79828464,79832491,79845420,79848931,79872872	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	89888929	89888962	89888929	+	RAMPAGE_only	12	15	38	0.862517	4.520000	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.842105
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	100831431	100831485	100831484	+	RAMPAGE_only	5	7	28	0.635539	4.469670	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100826132	100947194	MSTRG.7833.23	+	100826132,100828707,100829033,100836166,100845457,100889648,100894698,100894871,100897592,100898956,100906097,100906935,100910232,100913431,100935771,100936177,100937402,100938879,100940364,100942761,100944808,100947033	100826217,100828816,100835879,100836300,100845533,100889756,100894770,100895039,100897732,100899085,100906163,100907132,100910304,100913521,100935881,100936310,100937488,100938956,100940450,100942826,100944925,100947194	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	111616101	111616113	111616101	+	RAMPAGE_only	7	7	14	0.317769	2.950212	chr11	111616060	111616108	LINE|L2|L2a	+	chr11	111602442	111635389	MSTRG.4746.2	+	111602442,111616242	111602698,111635389	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	161206444	161206511	161206444	+	High_confidence	7	7	43	0.976006	5.071928	chr1	161206361	161206444	SINE|tRNA|LFSINE_Vert	+	chr1	161206408	161209727	NDUFS2|ENST00000473321.1	+	161206408,161209192,161209482	161206597,161209313,161209727	0.627907
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	87864658	87864659	87864658	-	RAMPAGE_only	13	15	15	0.340467	3.506891	chr16	87864599	87865066	LTR|ERVK|LTR22B	-	chr16	87830022	87863639	SLC7A5|ENST00000565644.5	-	87830022,87834413,87836497,87837844,87838713,87839701,87840428,87841049,87851723,87863589	87833025,87834591,87836647,87837941,87838817,87839825,87840473,87841155,87851849,87863639	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	34588450	34588453	34588452	-	High_confidence	11	19	19	0.431258	3.576618	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.947368
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	28425345	28425373	28425365	+	RAMPAGE_only	3	3	12	0.272374	3.095795	chr12	28425013	28425710	LTR|ERVL|MER76	+	chr12	28450397	28484229	CCDC91|ENST00000535212.1	+	28450397,28452477,28484051	28450418,28452654,28484229	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	61647122	61647169	61647162	-	High_confidence	2	2	10	0.226978	2.921928	chr8	61646951	61647212	LINE|L2|L2a	+	chr8	61626140	61646872	ASPH|ENST00000519678.5	-	61626140,61633682,61637946,61642887,61643385,61643944,61644599,61646749	61626280,61633727,61638003,61642920,61643433,61644001,61644632,61646872	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	68668634	68668635	68668634	-	RAMPAGE_only	34	34	41	0.930610	3.557605	chr4	68668491	68668867	LTR|ERVL-MaLR|THE1D	+	chr4	68646629	68670628	UGT2B15|ENST00000338206.5	-	68646629,68654036,68655094,68663007,68668039,68669894	68647383,68654256,68655182,68663139,68668188,68670628	0.951220
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	89889003	89889048	89889028	+	RAMPAGE_only	14	15	40	0.907912	4.431687	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.525000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	172958908	172958925	172958908	+	High_confidence	2	2	9	0.204280	2.947703	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	123060124	123060229	123060168	-	High_confidence	97	99	491	11.144622	5.596625	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.574338
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	96848185	96848190	96848185	+	RAMPAGE_only	3	3	8	0.181582	2.807355	chr14	96848099	96848394	LTR|ERVL-MaLR|MLT1L	-	chr14	96852887	96931722	VRK1|ENST00000557222.5	+	96852887,96853073,96855223,96856129,96856527,96860556,96931330	96852939,96853166,96855356,96856250,96856586,96860735,96931722	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	134612933	134612979	134612933	-	High_confidence	10	10	27	0.612841	4.282484	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.740741
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	99410086	99410113	99410112	+	High_confidence	3	3	11	0.249676	2.845351	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	37297344	37297357	37297356	+	High_confidence	4	4	8	0.181582	3.000000	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	20372696	20372720	20372717	-	High_confidence	6	6	22	0.499352	3.327340	chr22	20372309	20373771	LINE|L1|L1M3de	+	chr22	20350577	20372696	USP41|ENST00000486536.6	-	20350577,20363624,20364185,20366566,20367547,20369428,20370119,20372535	20350931,20363674,20364317,20366734,20367643,20369575,20370199,20372696	0.863636
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	93126975	93127007	93126975	+	RAMPAGE_only	12	12	42	0.953308	3.489672	chr1	93126918	93127162	SINE|MIR|MIRc	-	chr1	93120798	93134459	MTF2|ENST00000487263.5	+	93120798,93127231,93129277,93133702,93133927,93134090	93120894,93127299,93129448,93133808,93133980,93134459	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	37855566	37855592	37855588	+	RAMPAGE_only	4	4	15	0.340467	3.182006	chr22	37855622	37855711	SINE|tRNA|LFSINE_Vert	+	chr22	37858564	37871290	EIF3L|ENST00000464790.1	+	37858564,37862968,37863271,37870175,37871199	37858740,37863038,37863345,37870347,37871290	0.733333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	7576374	7576375	7576374	+	High_confidence	6	6	8	0.181582	2.750000	chr17	7576304	7576490	SINE|MIR|MIR	+	chr17	7576531	7578631	EIF4A1|ENST00000583389.5	+	7576531,7577055,7577343,7577568,7577826,7578226,7578341	7576692,7577165,7577487,7577706,7577916,7578244,7578631	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	74849998	74850216	74849998	+	RAMPAGE_only	43	43	303	6.877435	4.557480	chr8	74849937	74850052	LINE|L2|L2c	-	chr8	74824536	74855044	PI15|NM_015886.4	+	74824536,74825209,74843980,74845127,74845381,74849117	74824675,74825522,74844099,74845260,74845497,74855044	0.996700
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	12552923	12552945	12552923	+	RAMPAGE_only	2	2	8	0.181582	3.000000	chr8	12552811	12553874	LINE|L1|L1M2	+	chr8	12437035	12559824	MSTRG.23344.1	+	12437035,12438163,12440968,12444755,12530942	12437710,12438511,12441061,12444894,12559824	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	39627120	39627121	39627120	-	High_confidence	31	31	38	0.862517	4.057313	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.947368
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	54187904	54187905	54187904	-	High_confidence	8	8	9	0.204280	3.000000	chr12	54187852	54187993	LINE|L2|L2c	-	chr12	54181452	54188607	SMUG1|ENST00000506595.5	-	54181452,54182503,54183655,54188514	54181647,54182623,54183959,54188607	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	16630890	16630909	16630890	+	RAMPAGE_only	4	4	11	0.249676	2.845351	chr21	16630604	16631044	LTR|ERVL?|LTR89	-	chr21	16070487	16631727	MIR99AHG|NR_136541.1	+	16070487,16071113,16181590,16231055,16391613,16487489,16606993,16627715,16627883,16630795	16070567,16071398,16181687,16231115,16391685,16487538,16607087,16627785,16628021,16631727	0.545455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	74199380	74199405	74199404	+	High_confidence	8	8	15	0.340467	3.093069	chr8	74199086	74199513	LINE|L2|L2a	+	chr8	74199395	74208441	AC087627.1|ENST00000522339.2	+	74199395,74207358,74207720	74199532,74207493,74208441	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	6853905	6853943	6853928	+	High_confidence	8	8	29	0.658236	4.423252	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6895102	ALOX12P2|ENST00000576636.6	+	6853929,6854213,6892002,6894883,6895095	6854060,6854453,6892075,6895006,6895102	0.620690
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	60949433	60949446	60949443	-	RAMPAGE_only	12	14	47	1.066797	5.078748	chr1	60949259	60949438	SINE|MIR|MIRb	-	chr1	60940238	60970776	NFIA-AS2|ENST00000438559.5	-	60940238,60941179,60952510,60954321,60954484,60963565,60970547	60940631,60941252,60952684,60954370,60954602,60963804,60970776	0.553191
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	86453161	86453232	86453202	-	High_confidence	133	145	1194	27.101178	6.105131	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.829146
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	75324619	75324626	75324619	-	High_confidence	3	4	10	0.226978	3.121928	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223702	75324741	CASC9|ENST00000522183.1	-	75223702,75324564	75224358,75324741	0.700000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	119046561	119046604	119046597	-	RAMPAGE_only	3	3	17	0.385863	3.202820	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.941176
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	18794054	18794086	18794085	+	High_confidence	79	79	281	6.378083	6.182834	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.978648
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	233655694	233655708	233655694	+	RAMPAGE_only	41	43	61	1.384566	5.475863	chr1	233655516	233655871	LTR|ERVL-MaLR|MLT1A0	+	chr1	233614113	233667646	MSTRG.2397.2	+	233614113,233665605	233665569,233667646	0.950820
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	109053951	109053983	109053951	-	High_confidence	4	4	15	0.340467	3.807355	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.866667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	12530940	12530951	12530940	+	RAMPAGE_only	3	4	7	0.158885	2.521641	chr8	12530906	12531004	LINE|L2|L2b	+	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	179877281	179877295	179877281	-	High_confidence	4	4	15	0.340467	3.039149	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179843930	179877803	TOR1AIP2|ENST00000609928.5	-	179843930,179847534,179850844,179852631,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179865854,179877373,179877803	0.866667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	30337232	30337253	30337232	-	RAMPAGE_only	2	2	10	0.226978	3.121928	chr10	30337143	30337433	SINE|Alu|AluSp	+	chr10	30326563	30348977	MTPAP|ENST00000417581.1	-	30326563,30336802,30340225,30341467,30348856	30326635,30337027,30340450,30341640,30348977	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	58903660	58903680	58903660	-	High_confidence	2	3	9	0.204280	2.947703	chr1	58903524	58903639	SINE|MIR|MIRb	-	chr1	58882871	58903679	AC105277.1|ENST00000635492.1	-	58882871,58889148,58895844,58896997,58903567	58883734,58889208,58896009,58897090,58903679	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	61164695	61164752	61164751	+	RAMPAGE_only	3	3	15	0.340467	3.906891	chr1	61164449	61164759	SINE|Alu|AluY	-	chr1	61138927	61216960	MSTRG.958.15	+	61138927,61181248	61172999,61216960	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	2667103	2667196	2667195	+	High_confidence	11	12	68	1.543451	5.488126	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.720588
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	113873326	113873388	113873387	-	High_confidence	16	17	70	1.588846	5.188467	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873351	LINC01268|ENST00000434296.2	-	113868012,113870668,113872993	113870343,113870734,113873351	0.885714
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	53445773	53445781	53445773	+	High_confidence	4	4	13	0.295071	3.188722	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.615385
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	15779187	15779214	15779207	-	High_confidence	3	5	14	0.317769	3.546594	chr16	15779132	15779441	SINE|Alu|AluJr4	-	chr16	15775841	15779423	MYH11|ENST00000571910.1	-	15775841,15778779	15776176,15779423	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	2990740	2990749	2990748	-	RAMPAGE_only	6	6	13	0.295071	3.085055	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	46090497	46090548	46090497	-	RAMPAGE_only	5	5	23	0.522049	4.175736	chr11	46090495	46090712	DNA|hAT-Charlie|MER103C	-	chr11	45971347	46092205	PHF21A|ENST00000531959.5	-	45971347,45979759,46076753,46079133,46084165,46092182	45971367,45979966,46076840,46079166,46084302,46092205	0.869565
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	77088100	77088109	77088107	+	High_confidence	5	10	18	0.408560	3.101881	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	202585185	202585301	202585247	+	RAMPAGE_only	13	13	101	2.292478	4.262196	chr1	202585028	202585296	SINE|Alu|AluJb	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.960396
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	82139688	82139709	82139708	-	High_confidence	13	14	32	0.726330	4.625000	chr16	82139255	82145258	LINE|L1|L1PA2	+	chr16	82044370	82139631	AC092142.1|ENST00000567021.1	-	82044370,82063092,82070802,82139588	82044608,82063253,82071189,82139631	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	36914686	36914693	36914686	+	RAMPAGE_only	3	3	6	0.136187	2.584963	chr6	36914707	36914996	SINE|Alu|AluSz6	+	chr6	36885863	36928964	C6orf89|NM_152734.3	+	36885863,36899425,36902220,36914283,36914553,36916444,36919577,36923346	36886028,36899633,36902434,36914435,36914693,36916574,36919701,36928964	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	49086416	49086547	49086546	+	High_confidence	20	22	125	2.837225	5.990092	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.832000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	5726324	5726325	5726324	-	High_confidence	110	116	124	2.814528	5.522167	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.758065
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	86490864	86490911	86490910	-	RAMPAGE_only	3	3	17	0.385863	3.750000	chr16	86490702	86490896	LINE|L1|L1MC5a	-	chr16	86490267	86508877	FENDRR|ENST00000593604.1	-	86490267,86508654	86491004,86508877	0.588235
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	151539315	151539328	151539315	-	RAMPAGE_only	5	6	13	0.295071	3.392747	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.538462
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	1655443	1655475	1655448	-	RAMPAGE_only	3	3	19	0.431258	3.947703	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.526316
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	79493261	79493298	79493297	+	High_confidence	5	5	12	0.272374	3.277613	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.583333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	149420222	149420315	149420308	+	RAMPAGE_only	5	5	43	0.976006	4.320423	chr5	149420257	149420473	SINE|MIR|MIRb	-	chr5	149406963	149420937	CARMN|ENST00000505340.5	+	149406963,149420480	149407078,149420937	0.930233
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	30561513	30561570	30561538	-	High_confidence	4	5	17	0.385863	3.969816	chr7	30561212	30561820	DNA|hAT?|MER99	+	chr7	30516974	30561516	GARS-DT|ENST00000578293.6	-	30516974,30524366,30550635,30551317,30552099,30561465	30517498,30524486,30550781,30551395,30552179,30561516	0.588235
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	44209316	44209324	44209323	+	RAMPAGE_only	3	3	7	0.158885	2.521641	chr2	44209358	44209398	SINE|Alu|Alu	+	chr2	44201945	44232721	PPM1B|ENST00000459690.5	+	44201945,44217966,44218479,44232315	44202045,44218078,44218537,44232721	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	125497340	125497355	125497340	-	RAMPAGE_only	4	5	18	0.408560	3.734522	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	49371238	49371243	49371242	+	RAMPAGE_only	8	8	14	0.317769	3.546594	chr12	49371035	49371545	LINE|L1|L1MB3	-	chr12	49367546	49461229	SPATS2|ENST00000548388.6	+	49367546,49371227,49460769	49367587,49371290,49461229	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	3129660	3129669	3129668	-	RAMPAGE_only	5	5	15	0.340467	3.093069	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3128832	3132042	ZNF213-AS1|ENST00000573447.1	-	3128832,3131746	3129653,3132042	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	124631214	124631243	124631214	+	RAMPAGE_only	10	10	42	0.953308	4.784143	chr3	124631189	124632228	LINE|L2|L2a	+	chr3	124584681	124650915	KALRN|ENST00000454902.1	+	124584681,124632419,124633848,124650807	124584906,124632703,124633953,124650915	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	72571925	72571949	72571925	+	High_confidence	2	2	6	0.136187	2.584963	chr15	72571773	72571940	LINE|CR1|L3	+	chr15	72572125	72582133	ARIH1|ENST00000561770.1	+	72572125,72572262,72580730,72582074	72572165,72572380,72580991,72582133	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	29166092	29166104	29166092	-	RAMPAGE_only	1	2	7	0.158885	2.584963	chr1	29165912	29166153	SINE|tRNA-RTE|MamSINE1	-	chr1	29154696	29181882	MSTRG.528.6	-	29154696,29159373,29160374,29168502	29154910,29159486,29166912,29181882	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	63581519	63581920	63581713	+	RAMPAGE_only	54	57	592	13.437100	5.697458	chr6	63581722	63581820	SINE|MIR|MIRb	+	chr6	63572011	63583587	AL135905.2|ENST00000370651.6	+	63572011,63576435,63578436,63578897,63579256,63580056	63572719,63576985,63578529,63579028,63579331,63583587	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	94683599	94683627	94683626	+	High_confidence	3	3	8	0.181582	2.521641	chr10	94683574	94683628	DNA|hAT-Charlie|MER5B	+	chr10	94683620	94736190	CYP2C18|ENST00000285979.10	+	94683620,94687769,94688124,94694916,94706783,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94706960,94720537,94724533,94733438,94736190	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	159005961	159005962	159005961	+	High_confidence	5	5	8	0.181582	2.521641	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	68307080	68307123	68307107	-	High_confidence	5	5	18	0.408560	2.705229	chr10	68307029	68307329	SINE|Alu|AluSx1	-	chr10	68287026	68306879	PBLD|ENST00000277795.8	-	68287026,68292009,68292128,68296885,68306760	68289019,68292039,68292238,68296985,68306879	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	43881909	43881928	43881909	-	High_confidence	4	4	10	0.226978	2.725481	chr7	43881785	43881943	LINE|L2|L2	+	chr7	43878943	43881896	URGCP|ENST00000467410.1	-	43878943,43881658	43879260,43881896	0.600000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	121788316	121788333	121788316	-	RAMPAGE_only	6	7	20	0.453956	4.121928	chr3	121788145	121788280	SINE|MIR|MIRc	-	chr3	121769993	121835034	IQCB1|ENST00000349820.10	-	121769993,121772556,121781742,121788283,121790072,121807343,121808915,121826050,121828469,121828860,121834390,121834965	121770574,121772713,121781874,121788432,121790215,121807443,121809009,121826180,121828632,121828972,121834479,121835034	0.850000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	46373071	46373084	46373083	+	RAMPAGE_only	4	4	8	0.181582	2.521641	chr11	46373115	46373259	SINE|MIR|MIR	+	chr11	46374428	46375868	DGKZ|ENST00000524869.1	+	46374428,46374603,46374933,46375431,46375850	46374454,46374839,46375045,46375631,46375868	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	214398307	214398323	214398307	-	RAMPAGE_only	4	5	11	0.249676	2.921928	chr1	214398016	214398444	LINE|L1|L1MA8	+	chr1	214348695	214551223	PTPN14|ENST00000366956.9	-	214348695,214364511,214369456,214372710,214376218,214377958,214383310,214386843,214390987,214393694,214394898,214397912,214401684,214402882,214411683,214414628,214451804,214464629,214551182	214358050,214364675,214369691,214372839,214376437,214378102,214384788,214386922,214391045,214393777,214394986,214398001,214401772,214402953,214411751,214414726,214451974,214464957,214551223	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	101202415	101202449	101202448	-	High_confidence	3	3	9	0.204280	2.750000	chr8	101202158	101202485	SINE|Alu|AluSg7	+	chr8	101198936	101201657	ZNF706|ENST00000519103.1	-	101198936,101199989,101201606	101199239,101200123,101201657	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	131428839	131428873	131428839	+	RAMPAGE_only	7	7	19	0.431258	3.461320	chr7	131428688	131428844	DNA|hAT-Charlie|MER5A	+	chr7	131327896	131487962	MKLN1|ENST00000458153.5	+	131327896,131375423,131387119,131388883,131397266,131399237,131411305,131414644,131429032,131437784,131443480,131445773,131463216,131464293,131466275,131470841,131478622,131487606	131327997,131375493,131387262,131388972,131397376,131399433,131411383,131414710,131429145,131437997,131443702,131445903,131463364,131464408,131466415,131470944,131478677,131487962	0.684211
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	172093403	172093430	172093420	-	RAMPAGE_only	2	2	10	0.226978	2.947703	chr5	172093338	172093392	DNA|hAT-Ac|OldhAT1	-	chr5	172042069	172188342	STK10|NM_005990.3	-	172042069,172052928,172054568,172055587,172057348,172061138,172064719,172082325,172082960,172090231,172093411,172096425,172105655,172106619,172107779,172117480,172127372,172156623,172187886	172045022,172053042,172054694,172055776,172057473,172061268,172064812,172082505,172083084,172090362,172093960,172096560,172105737,172106814,172107852,172117630,172127421,172156788,172188342	0.700000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	67181635	67181673	67181672	-	RAMPAGE_only	4	4	13	0.295071	3.084963	chr16	67181600	67181913	LINE|L2|L2a	+	chr16	67176729	67183941	KIAA0895L|ENST00000563902.1	-	67176729,67178009,67178198,67179429,67179814,67180040,67183261	67176975,67178107,67178504,67179562,67179958,67180666,67183941	0.846154
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	77175252	77175255	77175252	+	High_confidence	7	7	19	0.431258	3.836592	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.842105
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	97516225	97516266	97516249	-	RAMPAGE_only	4	5	14	0.317769	3.807355	chr2	97516030	97516368	LINE|L2|L2c	-	chr2	97492662	97589721	ANKRD36B|ENST00000359901.8	-	97492662,97507035,97507563,97507994,97509580,97511137,97513179,97515731,97523325,97532310,97536299,97536467,97538167,97538334,97540033,97540200,97541910,97542078,97543789,97543956,97545665,97545832,97547535,97547702,97549418,97549585,97551288,97551451,97553167,97553342,97555059,97555225,97556936,97557103,97558798,97558965,97560664,97560831,97576378,97578905,97580461,97584943,97585283,97589524	97492855,97507065,97507657,97508065,97509733,97512052,97513363,97515945,97523467,97532384,97536372,97536496,97538240,97538363,97540106,97540229,97541983,97542107,97543862,97543985,97545738,97545861,97547608,97547731,97549491,97549614,97551361,97551480,97553240,97553371,97555132,97555254,97557009,97557132,97558871,97558994,97560737,97560860,97576446,97579043,97580568,97585117,97585398,97589721	0.928571
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	73951810	73951863	73951842	+	RAMPAGE_only	2	2	11	0.249676	3.277613	chrX	73951735	73952134	LINE|L1|L1MD1	+	chrX	73944326	73980159	MSTRG.25682.6	+	73944326,73946998,73969022	73944662,73968664,73980159	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	149420412	149420435	149420434	+	RAMPAGE_only	4	4	9	0.204280	3.169925	chr5	149420257	149420473	SINE|MIR|MIRb	-	chr5	149406963	149420937	CARMN|ENST00000505340.5	+	149406963,149420480	149407078,149420937	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	42959069	42959078	42959069	+	High_confidence	4	4	9	0.204280	2.947703	chr1	42959103	42959181	SINE|MIR|MIR3	+	chr1	42959048	42983358	SLC2A1-AS1|NR_033967.1	+	42959048,42970248,42973973,42983124	42959577,42970394,42974188,42983358	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	144485819	144485820	144485819	-	RAMPAGE_only	5	5	8	0.181582	2.750000	chr2	144485610	144485918	SINE|Alu|AluSx1	-	chr2	144429825	144496878	MSTRG.14261.34	-	144429825,144430537,144450174	144430026,144450054,144496878	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	46243232	46243287	46243267	-	RAMPAGE_only	8	8	44	0.998703	4.997677	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.681818
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	74605254	74605255	74605254	+	RAMPAGE_only	6	7	9	0.204280	3.000000	chr18	74605264	74605406	SINE|MIR|MIR3	+	chr18	74597869	74804627	ZNF407|ENST00000582337.5	+	74597869,74630966,74641007,74781427,74803963	74597937,74635706,74641122,74781502,74804627	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	113184981	113184989	113184981	+	High_confidence	4	4	9	0.204280	2.750000	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	48955689	48955700	48955689	+	RAMPAGE_only	4	4	11	0.249676	2.921928	chr13	48955450	48955793	LTR|ERVL|LTR16	-	chr13	48975911	49209779	FNDC3A|ENST00000492622.6	+	48975911,49006151,49075288,49114654,49131136,49136331,49138746,49145777,49167243,49168612,49172042,49174434,49175366,49178567,49185963,49187121,49188514,49191014,49191208,49196876,49197724,49197981,49198361,49201799,49203156,49207080	48976177,49006289,49075364,49114731,49131374,49136601,49138805,49145935,49167303,49168751,49172096,49174559,49175541,49178654,49186102,49187190,49188633,49191120,49191384,49196990,49197874,49198265,49198574,49201966,49203284,49209779	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	185693185	185693192	185693188	-	RAMPAGE_only	2	2	7	0.158885	2.584963	chr3	185692948	185693345	LINE|L1|L1ME4c	-	chr3	185689454	185824892	MSTRG.17917.8	-	185689454,185692698,185698298,185823152,185824782	185689627,185696663,185698347,185823213,185824892	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	2972437	2972505	2972504	-	RAMPAGE_only	7	7	18	0.408560	3.146286	chr11	2972339	2972686	LINE|L1|L1M5	+	chr11	2971449	2989268	NAP1L4|ENST00000530064.5	-	2971449,2972101,2976023,2978283,2979206,2983745,2989128	2971534,2972243,2976123,2978342,2979237,2983813,2989268	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	51403428	51403490	51403432	-	RAMPAGE_only	23	25	89	2.020105	4.821079	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.741573
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	58851957	58851958	58851957	+	RAMPAGE_only	7	7	7	0.158885	2.807355	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	73825672	73825711	73825674	-	RAMPAGE_only	7	10	27	0.612841	4.282484	chrX	73825563	73825735	DNA|hAT-Charlie|MER58C	+	chrX	73823336	73829691	XIST|ENST00000649757.1	-	73823336,73829067	73827984,73829691	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	129493040	129493058	129493040	-	RAMPAGE_only	5	6	17	0.385863	3.875000	chrX	129492703	129493323	LINE|L1|L1ME4a	+	chrX	129446845	129523405	SMARCA1|ENST00000371121.4	-	129446845,129448332,129465519,129465843,129468772,129471203,129480700,129481074,129487017,129488936,129490059,129491940,129493039,129496749,129497844,129499731,129504733,129506079,129507940,129511803,129515686,129515893,129516330,129518360,129523196	129447233,129448443,129465732,129465962,129468905,129471326,129480814,129481185,129487137,129489085,129490192,129492093,129493075,129496871,129498071,129499841,129504802,129506211,129508096,129511983,129515787,129515994,129516497,129518447,129523405	0.882353
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	116574068	116574094	116574068	+	RAMPAGE_only	1	1	8	0.181582	2.521641	chr6	116574038	116574376	LINE|RTE-BovB|MamRTE1	-	chr6	116571562	116590361	RWDD1|ENST00000518117.5	+	116571562,116572421,116580294,116584726,116588841,116590271	116571655,116572478,116580360,116584857,116588985,116590361	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	52616863	52616909	52616863	-	RAMPAGE_only	5	5	26	0.590143	3.783465	chr19	52616863	52617165	LINE|L1|L1PA8	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	0.961538
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	159397477	159397519	159397518	-	RAMPAGE_only	3	3	12	0.272374	2.855389	chr2	159397487	159397571	DNA|TcMar-Mariner|MADE2	+	chr2	159386373	159419867	MSTRG.14348.12	-	159386373,159389344,159395768,159400598,159404848,159405021,159412334,159419779	159386607,159389485,159398894,159400664,159404910,159405114,159412545,159419867	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	23636366	23636367	23636366	+	High_confidence	11	11	12	0.272374	3.277613	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	45524130	45524142	45524130	+	RAMPAGE_only	15	15	35	0.794423	4.672140	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.542857
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	66690222	66690249	66690222	+	RAMPAGE_only	3	3	11	0.249676	2.921928	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66738030	66788705	MAST4|ENST00000478569.1	+	66738030,66759708,66783334,66788669	66738257,66759862,66783384,66788705	0.545455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	15006394	15006405	15006395	+	RAMPAGE_only	4	6	13	0.295071	3.251629	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	14997747	15038323	PDXDC1|ENST00000450288.3	+	14997747,14998339,15006393,15008778,15009680,15016128,15017119,15017320,15018839,15022703,15026642,15028877,15029950,15031734,15032860,15033277,15034285,15034456,15035448,15036015	14997826,14998405,15006583,15008847,15009759,15016213,15017168,15017422,15018965,15022754,15026706,15028966,15030056,15031906,15032979,15033399,15034378,15034553,15035553,15038323	0.769231
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	229792401	229792429	229792401	-	High_confidence	3	3	11	0.249676	3.121928	chr2	229792328	229792672	DNA|TcMar-Tigger|Tigger4b	-	chr2	229791787	229793107	TRIP12|ENST00000470302.5	-	229791787,229792152,229792972	229792065,229792226,229793107	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	128622648	128622667	128622666	+	RAMPAGE_only	3	3	6	0.136187	2.584963	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128653243	MSTRG.22907.3	+	128574750,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294,128629393,128631679,128638773,128642216,128648791,128651037,128651188	128574791,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626530,128629458,128631869,128641379,128642281,128648982,128651095,128653243	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	71547308	71547414	71547308	+	RAMPAGE_only	5	5	38	0.862517	4.736216	chrX	71547285	71547497	DNA|hAT-Charlie|MER103C	-	chrX	71533299	71557047	MSTRG.25667.5	+	71533299,71536177,71537828,71544566,71554512,71555189,71555953,71556679,71556951	71533336,71536358,71538072,71548023,71554592,71555385,71556094,71556780,71557047	0.973684
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	100713688	100713706	100713705	-	RAMPAGE_only	8	8	15	0.340467	3.521641	chr8	100713489	100713780	SINE|Alu|AluJr4	-	chr8	100703258	100715601	MSTRG.23969.7	-	100703258,100704296,100704925,100705588,100709132,100709458,100712361,100712651,100713086	100703359,100704390,100705056,100705673,100709223,100709731,100712457,100712789,100715601	0.866667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	81192654	81192708	81192669	-	RAMPAGE_only	9	10	40	0.907912	4.903056	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.975000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	37083990	37084016	37083990	+	High_confidence	5	5	16	0.363165	3.750000	chr21	37083879	37084118	DNA|hAT-Charlie|MER113B	+	chr21	37083625	37093402	TTC3|ENST00000484047.5	+	37083625,37087246,37087832,37088798,37090232,37091292,37093308	37084331,37087401,37088346,37088886,37090286,37091626,37093402	0.937500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	197299315	197299321	197299316	-	High_confidence	5	10	24	0.544747	3.795089	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	6820183	6820205	6820197	+	RAMPAGE_only	5	7	17	0.385863	3.452820	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.529412
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	44180929	44180951	44180950	+	High_confidence	4	4	8	0.181582	2.500000	chr22	44180997	44181117	LINE|L2|L2c	+	chr22	44180889	44208469	PARVG|NM_022141.6	+	44180889,44181741,44183317,44185807,44187775,44189113,44190550,44192048,44193800,44196154,44196346,44198620,44205756,44206316	44181185,44181917,44183408,44185872,44187878,44189254,44190666,44192104,44193823,44196213,44196415,44198722,44205829,44208469	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	32571172	32571173	32571172	+	RAMPAGE_only	10	10	10	0.226978	2.921928	chr5	32571161	32571263	LTR|ERVL-MaLR|MLT1J1	-	chr5	32585498	32604079	SUB1|ENST00000265073.8	+	32585498,32588511,32591562,32598960,32601004	32585625,32588584,32591685,32599069,32604079	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	184568398	184568409	184568408	+	High_confidence	3	3	6	0.136187	2.584963	chr1	184568204	184568449	LINE|L1|L1MB3	-	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	9951298	9951299	9951298	+	RAMPAGE_only	4	7	7	0.158885	2.807355	chr12	9951147	9951552	LTR|ERV1|LOR1-int	+	chr12	9971504	9995694	CLEC12A|ENST00000449959.6	+	9971504,9978965,9980581,9982019,9995017	9971687,9979524,9980733,9982129,9995694	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	41940217	41940222	41940217	-	High_confidence	3	3	6	0.136187	2.584963	chr22	41939903	41940386	LINE|L2|L2a	+	chr22	41938720	41940219	CENPM|NM_001110215.2	-	41938720,41940138	41939196,41940219	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	105842371	105842400	105842371	+	High_confidence	12	12	21	0.476654	4.247928	chr11	105842025	105842553	LINE|L2|L2a	-	chr11	105842782	105903983	GRIA4|ENST00000527687.1	+	105842782,105862023,105887518,105898268,105903813	105842912,105862208,105887572,105898427,105903983	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	204544974	204544986	204544985	+	High_confidence	6	6	10	0.226978	2.947703	chr2	204544936	204545029	SINE|MIR|MIR3	+	chr2	204545792	205620162	PARD3B|NM_205863.3	+	204545792,204686180,204965151,205047580,205104425,205113490,205118920,205121590,205124326,205125608,205158721,205172210,205176444,205185763,205193204,205245777,205300529,205301463,205401012,205499895,205553323,205615455	204546119,204686282,204965323,205047690,205104514,205113577,205119046,205121949,205124466,205125737,205158907,205172381,205176577,205185863,205193320,205245822,205300736,205301701,205401123,205500031,205553403,205620162	0.700000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	88418867	88418897	88418867	+	RAMPAGE_only	3	3	14	0.317769	3.664498	chr9	88418784	88418941	SINE|MIR|MIR	+	chr9	88389370	88468477	SPIN1|ENST00000483785.1	+	88389370,88426381,88448940,88462495,88468371	88389410,88426591,88448989,88462749,88468477	0.785714
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	172854459	172854466	172854459	+	RAMPAGE_only	2	2	8	0.181582	3.000000	chr5	172854401	172854991	DNA|TcMar-Tigger|MER6A	+	chr5	172834410	172920571	ERGIC1|ENST00000523291.5	+	172834410,172888698,172897001,172909666,172914713,172920363	172834433,172888760,172897074,172909761,172914838,172920571	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	77285030	77285081	77285030	-	RAMPAGE_only	2	2	16	0.363165	3.875000	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.562500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	33141750	33141753	33141750	-	RAMPAGE_only	6	6	15	0.340467	3.664498	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33084583	33161465	CSTF3|ENST00000323959.8	-	33084583,33085712,33085894,33086987,33090531,33092270,33096305,33096834,33098689,33099033,33099607,33102176,33103106,33105566,33105882,33105997,33107902,33108385,33141666,33141884,33161298	33085289,33085773,33085989,33087141,33090727,33092340,33096408,33096978,33098764,33099150,33099717,33102339,33103184,33105693,33105917,33106064,33108000,33108418,33141762,33141986,33161465	0.600000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	28347619	28347654	28347653	-	RAMPAGE_only	11	11	26	0.590143	4.053509	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28324186	28348871	MSTRG.16663.4	-	28324186,28326831,28348600	28324454,28340622,28348871	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	28637853	28637969	28637853	-	RAMPAGE_only	5	6	44	0.998703	4.379664	chr17	28637660	28637803	SINE|Alu|AluSx3	-	chr17	28614439	28645131	KIAA0100|ENST00000528896.6	-	28614439,28615663,28616095,28616378,28616617,28616888,28617231,28618790,28619653,28619859,28620508,28620987,28621398,28623759,28624232,28628264,28631478,28631819,28632048,28632941,28633282,28633548,28633894,28634516,28636964,28637835,28638251,28638523,28639314,28639574,28639900,28640559,28641888,28642274,28642868,28643163,28643609,28644057,28644988	28615246,28615798,28616197,28616509,28616753,28616999,28617318,28618971,28619775,28620015,28620630,28621170,28621498,28623966,28624390,28628559,28631681,28631919,28632239,28633162,28633401,28633751,28634086,28635609,28637170,28638094,28638415,28638642,28639460,28639642,28640025,28640683,28642078,28642335,28642987,28643311,28643659,28644187,28645131	0.977273
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	64226142	64226180	64226158	-	High_confidence	75	77	406	9.215308	7.415131	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.972906
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	20658312	20658349	20658338	+	High_confidence	33	35	111	2.519456	4.708693	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.783784
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	79446868	79446869	79446868	-	RAMPAGE_only	5	5	8	0.181582	2.500000	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	75248150	75248151	75248150	-	High_confidence	111	112	129	2.928017	5.781744	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.883721
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	212792444	212792449	212792444	-	High_confidence	6	6	12	0.272374	3.418296	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	65434095	65434800	65434095	+	RAMPAGE_only	44	51	1390	31.549947	7.598835	chr11	65433870	65434194	LINE|L1|L1ME3F	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	40807850	40807859	40807850	+	High_confidence	2	3	7	0.158885	2.584963	chr15	40807894	40808104	SINE|MIR|MIRc	+	chr15	40807767	40814521	ZFYVE19|ENST00000561768.5	+	40807767,40809118,40809407,40809851,40810070,40810648,40812698,40813337,40813712,40813942,40814147	40807821,40809240,40809458,40809970,40810216,40810757,40812902,40813417,40813811,40814070,40814521	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	69425689	69425692	69425689	+	High_confidence	4	4	8	0.181582	2.521641	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425689	69429621	AP000439.3|ENST00000545202.1	+	69425689,69427362	69425806,69429621	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	36643846	36643858	36643846	-	High_confidence	2	2	6	0.136187	2.584963	chr19	36643461	36643909	DNA|hAT-Charlie|Charlie1	+	chr19	36638630	36643607	ZNF461|ENST00000540605.2	-	36638630,36643273	36640043,36643607	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	77088046	77088062	77088061	+	High_confidence	3	4	10	0.226978	3.169925	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088058	77148523	ZBED3-AS1|ENST00000513591.5	+	77088058,77098654,77100235,77118319,77147651	77088472,77098747,77100391,77118521,77148523	0.600000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	11252611	11252635	11252611	-	RAMPAGE_only	2	2	6	0.136187	2.584963	chr19	11252588	11252717	SINE|MIR|MIRb	-	chr19	11199294	11262452	DOCK6|ENST00000294618.11	-	11199294,11200307,11200715,11200908,11201888,11202393,11202583,11204080,11204199,11208685,11208910,11211775,11211992,11213175,11214274,11214552,11215386,11215800,11216913,11217230,11221850,11222108,11222734,11222992,11227336,11228939,11233202,11235597,11236345,11236792,11237455,11237640,11238044,11238186,11242044,11243058,11243257,11243556,11243801,11245562,11245811,11248065,11250873,11252118,11252481,11252782,11253638,11262396	11199539,11200469,11200822,11201052,11202125,11202483,11202709,11204095,11204331,11208829,11209103,11211876,11212151,11213328,11214409,11214649,11215471,11215927,11217096,11217391,11222020,11222248,11222905,11223106,11227477,11229035,11233366,11235759,11236577,11236879,11237557,11237779,11238115,11238304,11242207,11243152,11243385,11243710,11243882,11245712,11245878,11248151,11251086,11252248,11252550,11252958,11253726,11262452	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	101333305	101333306	101333305	-	High_confidence	9	9	10	0.226978	2.947703	chr3	101333261	101333534	SINE|Alu|AluJr	+	chr3	101325539	101333269	SENP7|ENST00000394085.7	-	101325539,101327665,101328477,101328645,101330333,101331984,101332769	101326080,101327816,101328546,101328689,101330386,101332109,101333269	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	35467080	35467083	35467080	-	High_confidence	14	15	26	0.590143	4.220176	chr18	35467057	35467118	DNA|hAT-Charlie|MER5A	-	chr18	35445742	35467081	AC007998.3|ENST00000591141.1	-	35445742,35446874,35466623	35445900,35446955,35467081	0.538462
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	66372479	66372480	66372479	-	High_confidence	4	5	7	0.158885	2.521641	chr11	66372296	66372448	DNA|hAT-Tip100|ORSL-2b	-	chr11	66362520	66372476	SLC29A2|NM_001300868.1	-	66362520,66364224,66365935,66366125,66366430,66367463,66367771,66368536,66369059,66369368,66371243,66371562,66372009,66372357	66363547,66364424,66366021,66366231,66366564,66367548,66367869,66368671,66369199,66369532,66371325,66371646,66372265,66372476	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	89058484	89058521	89058520	-	RAMPAGE_only	3	3	9	0.204280	3.000000	chr1	89058278	89058493	DNA|hAT-Charlie|MER58A	-	chr1	89052303	89065360	GBP1|NM_002053.2	-	89052303,89054681,89055112,89056015,89056853,89057991,89058840,89059316,89060196,89063044,89065159	89053468,89054875,89055215,89056228,89057134,89058234,89059043,89059426,89060324,89063253,89065360	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	63056555	63056560	63056559	+	High_confidence	10	11	22	0.499352	4.011365	chr15	63056384	63056694	SINE|Alu|AluY	+	chr15	63056860	63059962	TPM1|ENST00000558400.1	+	63056860,63059562	63057118,63059962	0.545455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	77736978	77737051	77736987	-	High_confidence	8	8	50	1.134890	5.188758	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.960000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	129488730	129488857	129488856	+	High_confidence	96	99	567	12.869655	5.896264	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.968254
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	52093922	52093953	52093922	-	High_confidence	1	1	9	0.204280	2.750000	chr19	52093852	52094032	SINE|Alu|AluJb	+	chr19	52064465	52094105	ZNF841|ENST00000594295.5	-	52064465,52076043,52076957,52084786,52088936,52093845	52067610,52076172,52077084,52084878,52089002,52094105	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	70249873	70249920	70249919	-	RAMPAGE_only	3	3	17	0.385863	2.983459	chr16	70249703	70249976	SINE|Alu|AluSx3	+	chr16	70246777	70251930	EXOSC6|ENST00000435634.2	-	70246777	70251930	0.941176
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	91178974	91178996	91178974	-	High_confidence	7	7	13	0.295071	3.546594	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91143276	91178646	DCN|NM_133506.3	-	91143276,91164604,91178341	91146252,91164717,91178646	0.846154
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	4269594	4269610	4269609	-	High_confidence	7	7	20	0.453956	2.970840	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.950000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	42644605	42644626	42644605	-	High_confidence	2	2	11	0.249676	3.321928	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	48492783	48492791	48492783	-	High_confidence	9	9	21	0.476654	4.106603	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.761905
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	8600707	8600739	8600738	+	High_confidence	7	8	38	0.862517	4.113206	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600725	8788523	PLCB1|ENST00000626966.2	+	8600725,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8600781,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788523	0.973684
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	4736355	4736362	4736355	-	High_confidence	3	3	14	0.317769	3.392747	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	112776698	112776755	112776732	-	RAMPAGE_only	3	3	16	0.363165	3.125000	chr7	112776598	112776801	LINE|L1|L1ME4a	-	chr7	112767174	112790393	MSTRG.22831.5	-	112767174,112772780,112775175,112790159	112767744,112773055,112784953,112790393	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	128619044	128619062	128619061	+	RAMPAGE_only	5	5	11	0.249676	2.521928	chr7	128619037	128619073	LINE|L2|L2c	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	34860633	34860646	34860633	-	High_confidence	6	6	16	0.363165	3.640224	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.562500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	147832362	147832367	147832362	-	High_confidence	16	16	32	0.726330	3.202820	chr5	147832317	147832344	LINE|L2|L2a	-	chr5	147824571	147832495	MSTRG.20279.4	-	147824571,147828021,147829598,147831522,147831916	147824706,147828128,147829630,147831768,147832495	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	30573001	30573046	30573025	-	RAMPAGE_only	7	7	34	0.771725	3.932045	chr7	30572870	30573848	LTR|ERV1|LOR1-int	-	chr7	30568832	30594809	MSTRG.22170.35	-	30568832,30576563,30579005,30579230,30585329,30594710	30574881,30578091,30579128,30579314,30585479,30594809	0.941176
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	46266488	46266516	46266488	-	High_confidence	15	20	47	1.066797	5.033184	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.765957
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	159228679	159228713	159228709	+	RAMPAGE_only	2	2	11	0.249676	3.121928	chr2	159228445	159228758	LINE|L2|L2	+	chr2	159224392	159232659	TANC1|ENST00000496406.1	+	159224392,159229577	159228896,159232659	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	35564202	35564221	35564220	-	High_confidence	4	4	8	0.181582	2.521641	chr20	35564181	35564251	SINE|MIR|MIRc	-	chr20	35558736	35564540	FER1L4|ENST00000616283.4	-	35558736,35559155,35559340,35560122,35560539,35561851,35563853	35559052,35559256,35559627,35560364,35560638,35561937,35564540	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	44564426	44564440	44564426	+	High_confidence	5	5	21	0.476654	3.921928	chr11	44564373	44564477	SINE|MIR|MIRc	+	chr11	44564426	44615295	CD82|ENST00000526958.5	+	44564426,44587474,44594642,44600157,44605057,44605354,44615271	44564502,44587556,44594725,44600230,44605182,44605429,44615295	0.809524
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	63838593	63838598	63838593	+	RAMPAGE_only	2	2	6	0.136187	2.584963	chr1	63837892	63839122	DNA|TcMar-Tigger|Tigger3b	+	chr1	63786492	63957882	MSTRG.995.1	+	63786492	63957882	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	95549134	95549155	95549134	-	RAMPAGE_only	2	2	9	0.204280	2.500000	chr10	95549116	95549316	DNA|hAT-Charlie|MER3	+	chr10	95399016	95561373	MSTRG.3274.25	-	95399016,95406117,95410632,95421960,95422189,95432447,95437489,95441125,95491034,95493164,95508208,95554668,95561299	95399189,95406147,95410777,95422073,95422216,95432576,95437555,95441180,95491120,95507813,95554097,95561251,95561373	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	68505175	68505210	68505186	+	RAMPAGE_only	2	2	11	0.249676	3.121928	chr11	68505079	68505198	SINE|MIR|MIR3	-	chr11	68519505	68615310	PPP6R3|ENST00000527403.6	+	68519505,68537658,68544837,68548066,68551120,68554144,68558565,68564302,68567013,68569747,68571039,68574108,68575957,68587944,68590659,68591575,68596096,68600340,68601862,68603341,68609903,68613065	68519651,68537891,68545024,68548204,68551186,68554257,68558679,68564432,68567166,68569897,68571104,68574224,68576043,68588024,68590714,68591706,68596218,68600494,68601969,68603492,68610023,68615310	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	48159996	48160011	48159996	-	RAMPAGE_only	3	3	8	0.181582	2.521641	chr15	48159968	48160045	SINE|tRNA|LFSINE_Vert	+	chr15	48142651	48178144	MYEF2|ENST00000616409.4	-	48142651,48149031,48149162,48151099,48151472,48151873,48152233,48153791,48157992,48158174,48158768,48159612,48165932,48167341,48168630,48178076	48143071,48149083,48149371,48151171,48151571,48151942,48152284,48153893,48158056,48158224,48158922,48159804,48166027,48167401,48168839,48178144	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	147909477	147909484	147909483	+	RAMPAGE_only	3	4	9	0.204280	2.750000	chr4	147908966	147909613	LTR|ERVL|MER21C	-	chr4	147881866	148072775	ARHGAP10|ENST00000507661.1	+	147881866,147906637,147909731,147913073,147939824,147946616,147955315,147965023,147966679,148023262,148046891,148064415,148071992	147881932,147906719,147909777,147913139,147939899,147946704,147955374,147965129,147966839,148023413,148047051,148064507,148072775	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	77369106	77369167	77369166	-	High_confidence	71	107	293	6.650457	6.719384	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77115256	77369158	MSTRG.21285.1	-	77115256,77151200,77151818,77271339,77273026,77350621,77368885	77123774,77151280,77151974,77271493,77273307,77350734,77369158	0.924915
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	19487898	19487901	19487900	-	High_confidence	16	29	35	0.794423	3.533671	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.828571
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	123097596	123097606	123097596	+	RAMPAGE_only	3	3	10	0.226978	2.725481	chr9	123097604	123097718	SINE|MIR|MIR3	+	chr9	122941008	123104866	RABGAP1|ENST00000373647.8	+	122941008,122957010,122984484,122986214,122989296,122990055,122996040,122996538,122997258,122998596,123010353,123015542,123020308,123065347,123070349,123073551,123074284,123076244,123076633,123089757,123090274,123097740,123098714,123099477,123101565,123103090	122941093,122957209,122984719,122986419,122989471,122990213,122996151,122996605,122997361,122998766,123010528,123015636,123020459,123065461,123070424,123073677,123074428,123076286,123076762,123089850,123090385,123097845,123098798,123099549,123101763,123104866	0.600000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	35164191	35164236	35164235	+	High_confidence	3	5	16	0.363165	2.999581	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	0.937500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	27220081	27220094	27220088	-	High_confidence	3	3	8	0.181582	2.521641	chr11	27219703	27225730	LINE|L1|L1PA2	+	chr11	27217151	27220102	BBOX1-AS1|ENST00000531363.1	-	27217151,27219686	27217480,27220102	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	73144770	73144826	73144770	-	RAMPAGE_only	5	7	23	0.522049	3.732159	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.913043
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	107580245	107580267	107580245	+	High_confidence	1549	1557	5883	133.531179	7.079220	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.915519
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	58912591	58912604	58912603	-	RAMPAGE_only	3	3	8	0.181582	2.750000	chr15	58912585	58912641	SINE|MIR|MIRc	+	chr15	58887291	58933558	MSTRG.8410.9	-	58887291,58888384,58889429,58890280,58892896,58893278,58893820,58894089,58894432,58897114,58898802,58899468,58912562,58913498,58916934,58932355,58933403	58887540,58888555,58889554,58890461,58893060,58893364,58893987,58894193,58894582,58897233,58898852,58901287,58912610,58913696,58916999,58932443,58933558	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	109250805	109250806	109250805	+	RAMPAGE_only	8	8	11	0.249676	2.845351	chr6	109245218	109251251	LINE|L1|L1PA2	-	chr6	109236613	109270514	LOC100996634|NM_001277339.1	+	109236613,109239327,109242178,109254447,109255370,109257545,109261888,109264800,109267807,109270038	109236780,109239520,109242306,109254648,109255492,109257774,109262091,109264956,109267901,109270514	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	51406531	51406560	51406538	+	RAMPAGE_only	11	12	29	0.658236	4.566109	chr12	51406372	51406645	LINE|L2|L2b	-	chr12	51391735	51462892	SLC4A8|ENST00000547697.6	+	51391735,51407802,51440707,51450641,51452123,51453538,51457350,51458558,51459950,51461203	51392132,51407897,51440789,51451022,51452259,51453699,51457539,51458650,51460108,51462892	0.758621
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	28090409	28090410	28090409	+	High_confidence	5	5	8	0.181582	2.750000	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	65433902	65434011	65433906	+	RAMPAGE_only	14	16	131	2.973412	5.531585	chr11	65433870	65434194	LINE|L1|L1ME3F	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	13707039	13707065	13707039	+	RAMPAGE_only	10	10	35	0.794423	4.672140	chr11	13707026	13707268	LINE|L1|L1ME4c	-	chr11	13694899	13732346	MSTRG.3851.9	+	13694899,13710692,13712965,13727555,13728611	13708079,13712046,13721859,13727683,13732346	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	72758533	72758595	72758552	-	High_confidence	12	16	49	1.112192	4.838567	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754862	72757939	STARD10|ENST00000543089.1	-	72754862,72755700,72757766	72755142,72755753,72757939	0.612245
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	30561805	30561823	30561805	-	High_confidence	4	4	13	0.295071	3.084963	chr7	30561212	30561820	DNA|hAT?|MER99	+	chr7	30550458	30561703	GARS-DT|ENST00000578572.1	-	30550458,30550635,30561465	30550519,30550781,30561703	0.769231
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	30563938	30563970	30563938	-	High_confidence	2	2	11	0.249676	3.095795	chr7	30563654	30564076	LTR|ERVL-MaLR|MLT1C	-	chr7	30548356	30564617	GARS-DT|ENST00000355837.4	-	30548356,30563722	30562128,30564617	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	50541367	50541384	50541367	+	RAMPAGE_only	2	2	7	0.158885	2.807355	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	38687765	38687853	38687805	+	RAMPAGE_only	3	3	28	0.635539	4.060262	chr4	38687695	38687851	LINE|CR1|L3	-	chr4	38664196	38701042	MSTRG.18292.2	+	38664196,38689728,38694745,38697081	38689071,38689879,38694906,38701042	0.964286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	131315969	131316006	131315993	+	RAMPAGE_only	2	2	13	0.295071	3.418296	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131264099	131394667	CDC42SE2|ENST00000505065.1	+	131264099,131315975,131359208,131385542,131390992	131264166,131316144,131359547,131385644,131394667	0.846154
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	70763630	70763637	70763630	+	RAMPAGE_only	2	2	7	0.158885	2.807355	chr4	70763601	70763658	LINE|L2|L2a	-	chr4	70734433	70807102	RUFY3|ENST00000502653.5	+	70734433,70741626,70762518,70763551,70764474,70768537,70773510,70775167,70778368,70783090,70784795,70788805,70789494,70793784,70794794,70800140,70802955,70804347,70806515	70734593,70741680,70762692,70763669,70764576,70768661,70773572,70775233,70778438,70783183,70784879,70788973,70789592,70793904,70794894,70800205,70802983,70804416,70807102	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	191682566	191682594	191682593	+	RAMPAGE_only	3	3	6	0.136187	2.584963	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191686177	NABP1|ENST00000435931.1	+	191678989,191681945,191683728,191684229,191685598	191679128,191682017,191683804,191684278,191686177	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	19681960	19681973	19681972	+	RAMPAGE_only	2	2	8	0.181582	2.750000	chr20	19682003	19682281	SINE|Alu|AluSz6	+	chr20	19212842	19722899	SLC24A3|ENST00000613834.1	+	19212842,19280958,19355137,19515487,19579999,19584970,19585440,19654061,19665863,19673600,19681857,19684175,19685099,19693258,19696796,19698567,19717527,19720990	19212984,19281083,19355141,19515564,19580074,19585055,19585544,19654136,19665889,19673654,19681991,19684336,19685361,19693425,19696911,19698680,19717593,19722899	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	123162638	123162646	123162638	+	RAMPAGE_only	2	2	7	0.158885	2.584963	chr10	123162608	123162659	DNA|hAT-Ac|OldhAT1	-	chr10	123154276	123170467	BUB3|ENST00000368865.8	+	123154276,123154917,123155657,123157728,123160406,123162235,123162611,123163819	123154485,123155112,123155727,123157880,123160565,123162413,123162828,123170467	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	18491537	18491556	18491537	+	RAMPAGE_only	5	6	10	0.226978	3.321928	chr12	18491467	18491583	DNA|hAT-Ac|OldhAT1	-	chr12	18282043	18648095	PIK3C2G|ENST00000546003.5	+	18282043,18286853,18290854,18293900,18313961,18320961,18325034,18338425,18343326,18346640,18362763,18371179,18381765,18391121,18399658,18420940,18423944,18488448,18491450,18496061,18497618,18503280,18505291,18538155,18546322,18562702,18563376,18566948,18594493,18609534,18640428,18647875	18282759,18286929,18291012,18294015,18314064,18321032,18325098,18338548,18343360,18346836,18362886,18371311,18381880,18391252,18399847,18421034,18424039,18488629,18491558,18496154,18497748,18503417,18505461,18538312,18546432,18562892,18563498,18567057,18594569,18609629,18640554,18648095	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	33989311	33989342	33989311	-	High_confidence	3	3	16	0.363165	3.640224	chr9	33989199	33989499	SINE|Alu|AluY	-	chr9	33948373	33989043	UBAP2|ENST00000421278.2	-	33948373,33953284,33956078,33960825,33971650,33973182,33986759,33988972	33948587,33953474,33956146,33960878,33971754,33973237,33986837,33989043	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	117643088	117643110	117643109	+	RAMPAGE_only	4	4	10	0.226978	2.947703	chr9	117641898	117643291	LTR|ERV1|LTR12C	-	chr9	117648605	117657027	LOC101928797|NR_109806.1	+	117648605,117650851,117652287,117653630,117655607,117656395	117648695,117650977,117652447,117653741,117655787,117657027	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	127330859	127330952	127330928	-	High_confidence	8	8	49	1.112192	5.092064	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	110642789	110642790	110642789	-	High_confidence	11	12	13	0.295071	3.392747	chr2	110642693	110642986	SINE|Alu|AluJr	-	chr2	110641325	110642790	BUB1|ENST00000478175.1	-	110641325,110641641,110642118,110642448	110641464,110641803,110642234,110642790	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	111718142	111718152	111718151	+	RAMPAGE_only	3	4	8	0.181582	2.807355	chrX	111718150	111718232	LINE|L2|L2	-	chrX	111681656	111760649	ALG13|ENST00000436609.5	+	111681656,111682235,111684964,111708026,111708964,111711674,111712483,111713224,111717845,111718111,111720094,111721602,111722792,111723797,111724933,111726808,111727331,111727613,111728184,111730394,111730524,111735050,111736713,111752789,111757587,111759733	111681826,111682294,111685103,111708393,111709048,111711725,111712530,111713297,111717927,111718274,111720170,111721711,111722857,111723898,111725061,111727055,111727445,111727770,111728305,111730427,111730580,111735122,111736879,111752830,111757762,111760649	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	50230995	50230996	50230995	+	High_confidence	6	6	6	0.136187	2.584963	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	138557286	138557287	138557286	-	High_confidence	4	4	6	0.136187	2.584963	chr5	138557194	138557264	SINE|Alu|AluSx3	-	chr5	138555826	138557891	HSPA9|ENST00000524109.1	-	138555826,138556451,138556773,138557868	138556114,138556592,138557496,138557891	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	130978732	130978739	130978738	-	High_confidence	4	4	9	0.204280	2.947703	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	98943525	98943578	98943575	+	High_confidence	43	47	166	3.767835	6.218968	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.993976
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	128640952	128641007	128641006	+	RAMPAGE_only	6	6	16	0.363165	3.625000	chr7	128640990	128641042	LTR|ERVL|LTR41	+	chr7	128574750	128653243	MSTRG.22907.3	+	128574750,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294,128629393,128631679,128638773,128642216,128648791,128651037,128651188	128574791,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626530,128629458,128631869,128641379,128642281,128648982,128651095,128653243	0.812500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	35230950	35230951	35230950	+	RAMPAGE_only	10	10	12	0.272374	3.418296	chr13	35230787	35230973	DNA|hAT-Charlie|MER5A	+	chr13	34942659	35672736	NBEA|ENST00000379939.6	+	34942659,35040932,35044946,35045305,35048562,35050268,35056009,35058716,35069907,35070718,35098296,35109289,35110809,35117413,35118227,35118376,35123481,35142268,35155773,35156082,35157077,35159015,35161749,35164355,35171271,35173463,35176995,35182359,35183975,35195863,35208699,35211052,35232491,35290388,35309527,35349107,35352156,35432268,35452091,35472399,35550476,35550929,35554986,35566904,35583897,35593327,35606425,35628080,35646258,35649654,35651804,35654854,35655578,35665084,35667373,35668367,35670900	34943114,35041164,35045047,35045401,35048684,35050395,35056129,35058863,35070105,35070852,35098405,35109442,35110978,35117493,35118290,35118474,35123574,35142377,35155855,35156206,35157270,35160032,35161967,35164509,35171452,35173594,35177103,35182528,35184071,35196302,35208854,35211179,35232619,35290450,35309592,35349216,35352323,35432393,35452235,35472536,35550594,35551032,35555102,35567017,35584038,35593447,35606578,35628248,35646348,35649847,35651876,35655010,35655749,35665186,35667570,35668519,35672736	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	27920133	27920139	27920133	-	High_confidence	5	6	13	0.295071	3.180833	chr22	27919974	27920411	LINE|L2|L2b	-	chr22	27860195	27920134	PITPNB|ENST00000415296.5	-	27860195,27873737,27894554,27896551,27897129,27897800,27910963,27914316,27919810	27860241,27873815,27894638,27896626,27897137,27897892,27911109,27914347,27920134	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	100831509	100831523	100831509	+	RAMPAGE_only	1	2	9	0.204280	3.169925	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100826132	100947194	MSTRG.7833.23	+	100826132,100828707,100829033,100836166,100845457,100889648,100894698,100894871,100897592,100898956,100906097,100906935,100910232,100913431,100935771,100936177,100937402,100938879,100940364,100942761,100944808,100947033	100826217,100828816,100835879,100836300,100845533,100889756,100894770,100895039,100897732,100899085,100906163,100907132,100910304,100913521,100935881,100936310,100937488,100938956,100940450,100942826,100944925,100947194	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	144106344	144106383	144106373	+	High_confidence	3	3	13	0.295071	3.418296	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.769231
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	28114991	28114992	28114991	-	RAMPAGE_only	471	518	584	13.255517	6.536211	chr21	28114721	28115202	LTR|ERVL|MLT2A2	-	chr21	28104354	28228480	MSTRG.15734.1	-	28104354,28163601,28212239,28217177,28225883,28228361	28119874,28163717,28212351,28217347,28225991,28228480	0.613014
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	169124700	169124701	169124700	+	RAMPAGE_only	8	8	10	0.226978	3.169925	chr1	169124508	169124714	SINE|MIR|MIRb	+	chr1	169107906	169127399	ATP1B1|ENST00000494797.1	+	169107906,169111369,169124883,169127223	169108163,169111498,169125039,169127399	0.700000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	101995256	101995300	101995299	+	RAMPAGE_only	5	5	18	0.408560	4.058814	chr14	101995329	101995627	SINE|Alu|AluY	+	chr14	101964572	102011733	DYNC1H1|ENST00000643684.1	+	101964572,101975711,101979318,101979718,101980363,101983018,101983381,101985686,101987452,101988702,101991526,101994183,101994672,101994985,101995180,101997034,101999988,102000285,102000953,102001144,102001534,102002536,102002791,102004517,102005041,102005887,102007007,102008177,102009842,102010275,102010739	101964947,101975799,101979492,101979974,101980550,101983290,101983609,101986763,101987632,101988852,101991673,101994324,101994849,101995096,101995300,101997274,102000144,102000399,102001064,102001354,102001681,102002703,102002965,102004950,102005236,102006170,102007108,102008337,102010086,102010459,102011733	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	32075879	32075899	32075879	+	High_confidence	2	2	6	0.136187	2.584963	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076113	32090780	ARHGAP5|ENST00000555814.1	+	32076113,32076457,32090501	32076217,32076657,32090780	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	17895504	17895513	17895511	-	High_confidence	9	12	25	0.567445	4.349649	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.840000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	65439264	65439467	65439360	+	RAMPAGE_only	25	26	180	4.085605	6.193033	chr11	65439400	65439684	SINE|Alu|AluSz6	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	36540276	36540277	36540276	-	RAMPAGE_only	6	6	8	0.181582	2.807355	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36547470	STK38|ENST00000229812.7	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540207,36547470	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	32927967	32927984	32927967	+	RAMPAGE_only	43	43	132	2.996110	5.775463	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.840909
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	52661530	52661531	52661530	+	RAMPAGE_only	6	6	9	0.204280	2.503258	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	3905218	3905232	3905231	+	High_confidence	7	7	20	0.453956	4.037401	chr12	3904972	3905441	LTR|ERVL-MaLR|MLT1H2	+	chr12	3905219	3910270	AC005842.1|ENST00000545163.1	+	3905219,3909883	3905381,3910270	0.850000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	39082976	39083066	39083065	+	RAMPAGE_only	12	12	74	1.679637	5.224401	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.756757
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	147173260	147173261	147173260	+	High_confidence	6	7	9	0.204280	2.500000	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	30758091	30758100	30758099	+	RAMPAGE_only	8	8	25	0.567445	3.749275	chr15	30758003	30758266	LINE|L2|L2a	-	chr15	30658739	30768126	AC091057.1|ENST00000562954.1	+	30658739,30716219,30750401,30767857	30658844,30716342,30750556,30768126	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	113920621	113920639	113920621	-	RAMPAGE_only	2	4	9	0.204280	2.500000	chr12	113920441	113920600	DNA|hAT-Charlie|Charlie4z	-	chr12	113816741	113966306	RBM19|ENST00000545145.6	-	113816741,113823208,113844667,113858790,113914968,113918391,113920610,113924696,113927053,113937006,113939959,113942323,113945827,113946353,113947333,113948832,113950082,113952511,113955130,113957781,113959211,113959864,113960058,113962231,113966191	113818186,113823321,113844788,113858896,113915085,113918447,113920690,113924757,113927229,113937136,113940160,113942434,113945924,113946475,113947464,113949036,113950154,113952590,113955211,113958050,113959404,113959903,113960178,113962414,113966306	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	63663438	63663513	63663438	-	RAMPAGE_only	3	3	24	0.544747	2.770283	chr15	63663338	63663455	SINE|MIR|MIR	+	chr15	63622837	63726513	MSTRG.8484.5	-	63622837,63623724,63624157,63625941,63628676,63630465,63632708,63633847,63634732,63635960,63637504,63638410,63638710,63640151,63641469,63642956,63643403,63644991,63645482,63648068,63649724,63651252,63652413,63654118,63655741,63656087,63658543,63659735,63660972,63661752,63662983,63664469,63665918,63666355,63669537,63672495,63674341,63677211,63680076,63680536,63686358,63689588,63690540,63692410,63693963,63694311,63694773,63696123,63698727,63706779,63712774,63713352,63716301,63718573,63718782,63723181,63725291	63622891,63623890,63624327,63626154,63628815,63630635,63632811,63633970,63634888,63636142,63637643,63638536,63638776,63640445,63641643,63643058,63643550,63645097,63645682,63648199,63649925,63651380,63652541,63654324,63655955,63656358,63658718,63659936,63661025,63662021,63663204,63664594,63666150,63666472,63669698,63672694,63677055,63678365,63680160,63680776,63686535,63689699,63690647,63692566,63694157,63694549,63694894,63696339,63698996,63706831,63712895,63713665,63716473,63718694,63718897,63723355,63726513	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	107441565	107441604	107441577	-	RAMPAGE_only	2	3	11	0.249676	3.277613	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	86490238	86490293	86490238	-	High_confidence	3	5	20	0.453956	3.784184	chr16	86489865	86490262	LINE|L1|L1ME3A	+	chr16	86487705	86490879	FENDRR|ENST00000598996.2	-	86487705,86490852	86490513,86490879	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	81995611	81995632	81995611	-	High_confidence	7	9	17	0.385863	3.248365	chr15	81995166	82000000	LINE|L1|L1HS	+	chr15	81953302	81995666	AC025219.1|ENST00000559299.1	-	81953302,81954388,81995426	81953507,81954469,81995666	0.647059
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	41186128	41186140	41186139	-	RAMPAGE_only	6	6	15	0.340467	3.807355	chr1	41186124	41186319	SINE|MIR|MIR1_Amn	+	chr1	41027198	41163017	SCMH1|NM_001172221.1	-	41027198,41028583,41033982,41037361,41046406,41048689,41070594,41075218,41113282,41116921,41142877,41151613,41160874,41161363,41162778	41028319,41028726,41034048,41037541,41046598,41048890,41070721,41075451,41113526,41117010,41143112,41151684,41160898,41161432,41163017	0.600000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	9422797	9422818	9422817	-	High_confidence	3	4	8	0.181582	2.750000	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NM_001319068.1	-	9405680,9407448,9408112,9412268,9414177,9418625,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9422660	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	16981055	16981068	16981067	-	High_confidence	5	5	12	0.272374	3.084963	chr1	16980879	16981020	SINE|MIR|MIRc	-	chr1	16974501	16980835	MFAP2|ENST00000375535.3	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16980586	16975023,16975342,16975730,16976545,16976794,16976923,16977198,16978314,16980835	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	9140390	9140428	9140393	+	High_confidence	59	59	229	5.197797	6.515622	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.694323
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	109953888	109953907	109953888	-	RAMPAGE_only	3	3	9	0.204280	2.947703	chr10	109953667	109954091	LTR|ERVL-MaLR|MLT1J2	-	chr10	109946118	109957911	ADD3-AS1|ENST00000631276.2	-	109946118,109947195,109951843	109946295,109947276,109957911	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	51027559	51027684	51027667	-	High_confidence	35	37	220	4.993517	6.584413	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.763636
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	102346493	102346502	102346493	-	High_confidence	6	6	14	0.317769	3.026987	chr8	102346474	102346770	SINE|Alu|AluSx	+	chr8	102254197	102347000	MSTRG.23985.4	-	102254197,102257631,102258984,102261145,102261914,102264473,102265099,102266946,102268977,102270038,102271133,102272528,102275520,102275707,102276971,102278825,102279035,102280393,102281288,102285126,102285512,102286359,102287432,102288154,102289452,102293604,102293954,102294981,102295203,102295413,102295635,102296892,102297457,102298391,102298847,102299451,102299999,102305084,102311298,102311734,102312133,102312341,102313803,102314743,102323310,102326545,102327741,102329089,102329282,102342472,102345395,102346235,102346902	102254514,102257717,102259129,102261259,102262070,102264558,102265275,102267007,102269108,102270183,102271245,102272772,102275619,102275828,102277192,102278939,102279208,102280467,102281519,102285338,102285781,102286617,102287564,102288266,102289576,102293844,102294115,102295111,102295330,102295532,102295782,102296984,102297606,102298489,102298971,102299547,102304169,102305295,102311496,102311889,102312245,102312485,102313916,102314853,102323495,102326663,102327896,102329200,102329399,102342684,102345545,102346395,102347000	0.785714
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	20734740	20734788	20734740	-	RAMPAGE_only	6	6	42	0.953308	3.606565	chr16	20734689	20734805	DNA|hAT-Charlie|Charlie6	-	chr16	20733664	20741796	MSTRG.9321.4	-	20733664,20737707,20741508	20737286,20739071,20741796	0.976190
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	42638585	42638595	42638585	+	RAMPAGE_only	2	2	8	0.181582	2.807355	chr15	42638526	42638654	SINE|MIR|MIR3	-	chr15	42629841	42670050	STARD9|ENST00000568493.1	+	42629841,42634855,42637906,42638025,42638699,42651015,42652519,42661157,42662793,42663280,42669157	42630146,42634972,42637939,42638087,42638812,42651085,42652592,42661225,42662891,42663917,42670050	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	62366998	62366999	62366998	-	High_confidence	5	5	8	0.181582	2.750000	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	105329640	105329671	105329670	-	High_confidence	6	6	21	0.476654	3.784184	chr2	105329666	105329774	LTR|ERV1|LTR2752	-	chr2	105264413	105329688	MSTRG.14006.2	-	105264413,105267216,105269271,105272854,105273543,105275559,105277613,105280381,105284315,105296355,105298510,105307613,105329624	105267188,105267559,105269705,105273014,105273690,105275703,105277671,105280723,105284398,105296510,105298705,105308315,105329688	0.904762
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	40715065	40715090	40715089	-	High_confidence	3	3	8	0.181582	2.521641	chrX	40715051	40715237	SINE|MIR|MIR	+	chrX	40713877	40715051	MED14|ENST00000492219.1	-	40713877,40714536	40713907,40715051	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	135965718	135965764	135965723	+	High_confidence	96	137	720	16.342419	6.406593	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.977778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	134432434	134432463	134432435	-	High_confidence	9	13	45	1.021401	4.743300	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	59708596	59708640	59708596	-	RAMPAGE_only	33	33	139	3.154995	6.201513	chr13	59708300	59708705	LINE|L2|L2-3_Crp	+	chr13	59665691	59751021	DIAPH3|ENST00000649952.1	-	59665691,59750838	59666846,59751021	0.683453
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	155228139	155228150	155228142	-	High_confidence	2	2	7	0.158885	2.584963	chr1	155228116	155228267	LINE|L2|L2a	-	chr1	155213824	155227534	GBAP1|NR_002188.3	-	155213824,155214567,155215053,155215562,155215761,155216383,155216856,155217239,155217518,155217963,155218387,155218847,155227381	155214473,155214684,155215162,155215651,155215787,155216621,155217029,155217373,155217593,155218049,155218479,155218942,155227534	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	59892716	59892746	59892716	-	High_confidence	8	8	39	0.885214	4.681881	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.641026
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	132285316	132285320	132285316	-	High_confidence	3	3	7	0.158885	2.807355	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	30196526	30196535	30196526	-	RAMPAGE_only	2	2	7	0.158885	2.521641	chr6	30196338	30196501	SINE|MIR|MIRc	-	chr6	30184454	30190394	TRIM26|ENST00000480999.1	-	30184454,30189166,30189417	30186558,30189199,30190394	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	129489073	129489126	129489125	+	High_confidence	14	14	51	1.157588	5.206547	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.784314
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	53887716	53887727	53887716	-	High_confidence	3	3	11	0.249676	3.095795	chr2	53887554	53887673	LTR|LTR|LTR107_Mam	-	chr2	53887416	53888320	PSME4|ENST00000478731.1	-	53887416,53887857	53887467,53888320	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	4726692	4726771	4726733	-	RAMPAGE_only	5	5	24	0.544747	3.936260	chr9	4725911	4728263	DNA|TcMar-Tigger|Tigger1	-	chr9	4712974	4741227	MSTRG.24301.4	-	4712974,4718418,4719134,4722505,4726082,4740936	4713096,4718537,4719307,4722625,4727924,4741227	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	2975621	2975682	2975660	+	RAMPAGE_only	16	20	69	1.566148	5.373796	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2853896	3037738	MSTRG.10188.6	+	2853896,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2854102,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037738	0.797101
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	124081887	124081890	124081887	+	RAMPAGE_only	6	6	11	0.249676	3.321928	chr8	124081789	124082038	SINE|MIR|MIRb	-	chr8	123914563	124122206	MSTRG.24106.3	+	123914563,123955991,123963277,123966006,123966158,123970034,123973433,123975149,123975897,123977416,123980464,123986067,124003166,124010593,124013430,124017627,124021549,124023443,124035276,124039881,124045766,124049606,124060547,124061851,124064346,124066427,124067766,124069359,124070466,124071505,124076197,124091422,124094895,124097270,124097784,124101096,124103145,124118843,124119606	123914690,123956074,123963398,123966061,123966290,123970097,123973512,123975306,123976084,123977609,123980811,123986176,124003347,124010714,124013531,124017718,124021669,124023596,124035454,124040006,124045901,124060290,124060709,124062032,124064573,124066550,124067806,124069475,124070598,124071631,124082458,124091583,124095038,124097359,124097883,124101338,124103309,124118944,124122206	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	37755641	37755658	37755657	+	RAMPAGE_only	7	9	23	0.522049	3.936180	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	0.913043
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	99210280	99210303	99210294	-	RAMPAGE_only	6	6	16	0.363165	3.456565	chr7	99210034	99210321	LINE|L2|L2b	+	chr7	99173573	99207506	KPNA7|ENST00000327442.6	-	99173573,99177919,99181882,99184928,99188299,99193018,99195069,99196083,99203105,99207400	99173794,99178066,99182065,99185162,99188563,99193101,99195338,99196166,99203240,99207506	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	33194695	33194709	33194708	-	High_confidence	7	7	17	0.385863	3.375000	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.823529
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	52615380	52615444	52615423	-	High_confidence	7	7	33	0.749028	4.241729	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	58314809	58314854	58314809	+	RAMPAGE_only	8	8	20	0.453956	4.037401	chr19	58314839	58315267	LTR|ERVK|LTR3	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.850000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	193614814	193614855	193614823	+	High_confidence	13	14	46	1.044099	3.622872	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.891304
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	70100709	70100711	70100710	+	RAMPAGE_only	4	6	8	0.181582	2.750000	chr17	70100541	70100738	SINE|MIR|MIR	-	chr17	70096639	70133604	KCNJ16|ENST00000586462.1	+	70096639,70131994	70096926,70133604	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	2971751	2971781	2971751	-	RAMPAGE_only	5	5	14	0.317769	3.085055	chr11	2971741	2972075	DNA|TcMar-Tigger|MER47A	+	chr11	2971449	2989268	NAP1L4|ENST00000530064.5	-	2971449,2972101,2976023,2978283,2979206,2983745,2989128	2971534,2972243,2976123,2978342,2979237,2983813,2989268	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	10843565	10843585	10843565	+	RAMPAGE_only	55	61	109	2.474061	5.399150	chr17	10843349	10843935	LTR|ERV1|LTR36	+	chr17	10844673	10880895	AC015908.2|ENST00000645807.1	+	10844673,10847891,10878369,10880471	10844964,10848045,10878524,10880895	0.596330
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	124047002	124047020	124047002	+	RAMPAGE_only	3	3	11	0.249676	3.121928	chrX	124046997	124047190	SINE|MIR|MIR	+	chrX	123961738	124100902	STAG2|ENST00000371144.7	+	123961738,124021366,124022530,124025839,124030960,124037526,124042568,124045163,124047353,124049004,124050185,124051120,124051314,124056127,124057865,124061223,124061770,124062901,124063115,124063847,124065875,124066174,124066355,124068563,124071148,124076331,124077956,124081379,124083420,124086546,124090574,124094017,124095371,124100573	123961856,124021431,124022671,124025918,124031125,124037623,124042645,124045368,124047505,124049078,124050309,124051219,124051394,124056235,124057977,124061341,124061874,124062994,124063205,124064051,124065946,124066262,124066436,124068656,124071323,124076471,124078058,124081528,124083549,124086770,124090764,124094144,124095449,124100902	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	65244454	65244455	65244454	-	RAMPAGE_only	35	36	45	1.021401	4.680689	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.955556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	114405737	114405796	114405785	+	RAMPAGE_only	5	6	33	0.749028	4.437500	chr11	114405747	114405830	LINE|CR1|X6B_LINE	-	chr11	114400673	114408123	RBM7|ENST00000545678.1	+	114400673,114405705,114407444	114400767,114405799,114408123	0.848485
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	86490319	86490408	86490319	-	High_confidence	3	3	22	0.499352	3.788755	chr16	86490288	86490466	LTR|ERVL-MaLR|MLT1F1	-	chr16	86487705	86490879	FENDRR|ENST00000598996.2	-	86487705,86490852	86490513,86490879	0.727273
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	58424069	58424076	58424069	-	RAMPAGE_only	4	4	10	0.226978	2.725481	chr14	58423952	58424081	LINE|CR1|L3	-	chr14	58408663	58427114	TIMM9|ENST00000556007.6	-	58408663,58410842,58411906,58424007,58427053	58409099,58410938,58411971,58424095,58427114	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	122074104	122074156	122074155	-	RAMPAGE_only	6	7	20	0.453956	3.221097	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065943	122076083	LOX|ENST00000505593.5	-	122065943,122070052,122070493,122074012,122075403,122076017	122066749,122070168,122070589,122074169,122075541,122076083	0.850000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	64242406	64242547	64242546	+	High_confidence	19	19	149	3.381973	5.899402	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.986577
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	51350355	51350369	51350368	-	RAMPAGE_only	6	6	18	0.408560	3.572469	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.944444
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	9588099	9588131	9588117	-	RAMPAGE_only	2	2	9	0.204280	3.000000	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9547712	9614505	PPP4R1|ENST00000285124.12	-	9547712,9549196,9550051,9550277,9553321,9557220,9559418,9561979,9562921,9563377,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9595017,9614225,9614477	9547952,9549338,9550186,9550398,9553422,9557382,9559604,9562075,9563046,9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9595102,9614270,9614505	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	38810332	38810339	38810332	-	High_confidence	6	6	10	0.226978	2.947703	chr17	38810300	38810417	LINE|L2|L2b	+	chr17	38802839	38810595	CWC25|ENST00000619462.4	-	38802839,38806296,38806764,38809701,38810275,38810467	38802861,38806395,38806976,38809765,38810400,38810595	0.700000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	11808240	11808258	11808240	+	High_confidence	2	3	8	0.181582	3.000000	chr8	11807810	11808255	LTR|ERV1|MER31B	-	chr8	11808416	11838967	FDFT1|ENST00000525954.5	+	11808416,11809666,11821749,11826023,11830243,11831517,11838387	11808891,11809850,11821878,11826215,11830420,11831670,11838967	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	114714016	114714017	114714016	-	RAMPAGE_only	4	4	6	0.136187	2.584963	chr3	114713852	114714012	DNA?|DNA?|MER131	-	chr3	114338683	114758940	ZBTB20|ENST00000464560.5	-	114338683,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114758940	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	89479889	89479890	89479889	-	High_confidence	78	78	82	1.861220	4.268876	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89402924	89479890	SEMA4D|ENST00000540475.5	-	89402924,89405350,89455887,89479571	89403016,89405699,89455953,89479890	0.914634
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	7946875	7946888	7946878	+	High_confidence	45	45	100	2.269780	5.389013	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.870000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	28354199	28354206	28354205	-	High_confidence	4	4	11	0.249676	3.277613	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28326774	28354204	ZSCAN31|ENST00000426434.1	-	28326774,28327382,28353861	28326854,28327533,28354204	0.545455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	4355592	4355593	4355592	-	High_confidence	144	146	146	3.313879	5.634752	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.863014
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	53523953	53523977	53523963	-	High_confidence	7	8	23	0.522049	4.055958	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	76050748	76050763	76050748	-	RAMPAGE_only	2	2	9	0.204280	3.000000	chr12	76050731	76051020	SINE|Alu|AluJo	+	chr12	76049433	76053158	NAP1L1|ENST00000547969.5	-	76049433,76050530,76053090	76049785,76050653,76053158	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	12556980	12556982	12556981	+	RAMPAGE_only	3	5	8	0.181582	2.750000	chr8	12556598	12558761	LINE|L1|L1M2	+	chr8	12437035	12559824	MSTRG.23344.1	+	12437035,12438163,12440968,12444755,12530942	12437710,12438511,12441061,12444894,12559824	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	115209375	115209426	115209405	-	RAMPAGE_only	3	3	21	0.476654	3.636894	chr5	115208861	115209680	LINE|L1|L1M8	-	chr5	115204011	115262872	PGGT1B|ENST00000419445.5	-	115204011,115216864,115221823,115230975,115236389,115237857,115241538,115253136,115262711	115212583,115216973,115222008,115231021,115236522,115238009,115241606,115253255,115262872	0.904762
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	103085384	103085398	103085384	-	RAMPAGE_only	2	3	7	0.158885	2.584963	chr4	103085151	103085336	DNA|hAT-Charlie|MER58A	-	chr4	103079478	103099808	BDH2|ENST00000464039.5	-	103079478,103082080,103082870,103085348,103091176,103092599,103095202,103096182,103098643,103099782	103079755,103082173,103082929,103086540,103091285,103092696,103095281,103096274,103099400,103099808	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	96735373	96735407	96735406	+	RAMPAGE_only	4	4	21	0.476654	3.177566	chr1	96735400	96735503	SINE|MIR|MIRb	+	chr1	96725605	96746852	MSTRG.1245.1	+	96725605	96746852	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	48979485	48979509	48979485	+	RAMPAGE_only	3	3	10	0.226978	2.921928	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	85773489	85773493	85773489	-	RAMPAGE_only	3	3	7	0.158885	2.521641	chr11	85773277	85773644	LINE|L2|L2c	+	chr11	85694220	85758069	SYTL2|NM_001162951.2	-	85694220,85696182,85697978,85700514,85704857,85707428,85709330,85711112,85714412,85718789,85720857,85727895,85733938,85736500,85737574,85745636,85748271,85757624	85695340,85696388,85698078,85700593,85705028,85707531,85709500,85711232,85714507,85718843,85720959,85727967,85734742,85736612,85737656,85745772,85748423,85758069	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	1455723	1455759	1455758	-	RAMPAGE_only	2	2	11	0.249676	3.277613	chr7	1455719	1455815	LINE|CR1|L3b	+	chr7	1445070	1459461	MSTRG.21923.14	-	1445070,1446712,1447574,1448619,1459183	1445428,1446828,1447765,1450288,1459461	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	238485982	238486035	238486034	-	High_confidence	6	6	23	0.522049	3.970573	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.782609
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	9330516	9330517	9330516	+	RAMPAGE_only	6	6	7	0.158885	2.584963	chr20	9330518	9330631	SINE|MIR|MIRb	+	chr20	9307799	9480816	PLCB4|NM_000933.3	+	9307799,9337125,9338007,9338893,9362895,9365460,9371213,9372302,9373046,9380053,9384200,9387462,9389878,9390530,9393587,9395522,9401489,9407916,9408632,9409056,9411036,9419806,9421296,9423747,9435559,9437001,9443980,9444177,9453346,9457413,9459634,9468570,9472789,9473278,9476716,9478920	9307898,9337206,9338067,9339037,9362975,9365514,9371295,9372403,9373104,9380162,9384411,9387556,9389958,9390615,9393678,9395618,9401590,9408058,9408717,9409181,9411088,9419909,9421461,9423952,9435648,9437152,9444030,9444243,9453462,9457489,9459810,9468672,9472847,9473365,9476753,9480816	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	2725951	2726074	2725951	+	RAMPAGE_only	4	4	42	0.953308	4.431257	chr18	2725825	2726062	LINE|L1|L1MD3	-	chr18	2724901	2769807	MSTRG.11616.10	+	2724901,2728456,2729274,2732264,2738396,2739431,2740702,2743760,2747521,2750042,2750349,2751277,2752487,2760651,2762104,2763636,2769693	2726524,2728596,2729409,2732492,2738545,2739520,2740821,2743928,2747647,2750122,2750507,2751393,2752552,2760739,2762236,2763789,2769807	0.952381
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	149277622	149277682	149277622	-	RAMPAGE_only	100	108	303	6.877435	6.806905	chr3	149277531	149277647	LINE|L2|L2c	+	chr3	149249404	149291800	MSTRG.17614.4	-	149249404,149252845,149254117,149255929,149256396,149257457,149266865,149269819,149270749,149273502,149273999,149275462,149276509,149276711,149277335,149288484,149291726	149250169,149253058,149254268,149256141,149256537,149257589,149267037,149270062,149270920,149273715,149274268,149275702,149276623,149276901,149277402,149288605,149291800	0.570957
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	15657883	15657884	15657883	+	RAMPAGE_only	26	28	28	0.635539	3.921030	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.928571
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	147864712	147864726	147864712	+	RAMPAGE_only	2	2	8	0.181582	2.750000	chr4	147864565	147864786	DNA|hAT-Charlie|MER58A	-	chr4	147860982	148072776	ARHGAP10|ENST00000506054.5	+	147860982,147875020,147879231,147881837,147906637,147909731,147913073,147939824,147946616,147955315,147965023,147966679,148023262,148046891,148063147,148064415,148071992	147866816,147875150,147879338,147881932,147906719,147909777,147913139,147939899,147946704,147955374,147965129,147966839,148023413,148047051,148063300,148064507,148072776	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	44962753	44962767	44962766	+	RAMPAGE_only	3	3	8	0.181582	2.807355	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44958245	44976973	FAM207A|ENST00000479127.5	+	44958245,44960099,44967033,44973196,44976679	44958424,44960168,44967181,44973265,44976973	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	52616720	52616768	52616767	-	RAMPAGE_only	8	9	24	0.544747	3.516028	chr19	52616561	52616863	SINE|Alu|AluSp	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	761048	761061	761049	+	High_confidence	5	7	14	0.317769	3.324863	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	127944630	127944638	127944637	-	RAMPAGE_only	4	4	9	0.204280	2.725481	chr9	127944423	127944587	SINE|MIR|MIRb	-	chr9	127940880	127948159	FAM102A|ENST00000465821.5	-	127940880,127944776,127945366,127945648,127948070	127944684,127944898,127945562,127945753,127948159	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	2242922	2242923	2242922	+	High_confidence	17	17	17	0.385863	3.690117	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	28090309	28090332	28090309	+	High_confidence	4	4	9	0.204280	3.169925	chr8	28089941	28090482	LTR|ERVL|LTR66	+	chr8	28090345	28113173	ELP3|ENST00000521570.5	+	28090345,28097218,28099827,28106712,28107912,28110369,28113018	28090403,28097318,28099966,28106783,28107976,28110438,28113173	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	77088137	77088175	77088174	+	High_confidence	4	4	14	0.317769	3.085055	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088274	77131207	ZBED3-AS1|ENST00000504506.5	+	77088274,77089345,77098654,77105655,77118319,77131090	77088472,77089403,77098747,77105689,77118521,77131207	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	46113594	46113608	46113594	+	High_confidence	9	9	15	0.340467	3.773557	chr21	46113375	46113722	SINE|Alu|AluJr	-	chr21	46113616	46117521	COL6A2|ENST00000485591.1	+	46113616,46115871,46116008,46116376,46116650,46116769,46117399	46114073,46115925,46116053,46116403,46116677,46116814,46117521	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	83076110	83076137	83076110	-	RAMPAGE_only	16	16	36	0.817121	4.852169	chr9	83075887	83076181	SINE|Alu|AluSc5	+	chr9	82979584	83063128	RASEF|NM_152573.3	-	82979584,82990390,82992905,82997011,82998364,83000168,83000432,83000895,83004497,83005415,83007436,83009640,83012433,83015804,83022335,83025774,83062436	82982782,82990467,82993025,82997126,82998446,83000316,83000570,83001130,83004586,83005500,83007505,83009756,83012511,83015900,83022426,83025921,83063128	0.694444
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	82381386	82381405	82381386	+	RAMPAGE_only	2	3	11	0.249676	2.846439	chr15	82381366	82381826	LTR|ERV1|LTR9B	+	chr15	82370738	82439153	MSTRG.8744.3	+	82370738,82400659,82404611,82408287,82414600,82415527,82419367,82431829,82432816,82433561,82434033,82434868,82435966,82436278	82382298,82400716,82404751,82408367,82414804,82419247,82420075,82432631,82432897,82433649,82434602,82434929,82436069,82439153	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	47679956	47679965	47679956	+	High_confidence	3	3	10	0.226978	3.121928	chr17	47679684	47679996	SINE|Alu|AluY	-	chr17	47679879	47682589	KPNB1|ENST00000580158.1	+	47679879,47680507,47682403	47680134,47680669,47682589	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	196404216	196404229	196404228	-	RAMPAGE_only	5	5	10	0.226978	2.725481	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225782	196465387	KCNT2|ENST00000498426.5	-	196225782,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196317173,196331155,196333846,196340340,196342078,196373139,196398562,196423049,196425851,196428104,196429576,196465292	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196317269,196331261,196334060,196340570,196342228,196373248,196398671,196423113,196425988,196428269,196429757,196465387	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	146223344	146223345	146223344	+	RAMPAGE_only	4	4	7	0.158885	2.807355	chr5	146223046	146223364	LINE|L1|L1ME4b	-	chr5	146203599	146289223	RBM27|NM_018989.1	+	146203599,146218984,146223402,146228945,146229716,146230656,146233449,146237297,146251710,146254942,146258448,146260744,146261509,146263490,146267648,146269206,146269419,146270953,146271482,146284621,146285946	146203824,146219103,146223527,146229037,146229910,146230917,146233743,146237432,146251875,146255092,146258593,146260898,146261806,146263631,146267768,146269281,146269584,146271058,146271674,146284732,146289223	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	99274028	99274031	99274028	+	RAMPAGE_only	9	9	22	0.499352	4.011365	chr4	99273774	99274067	LTR|ERVL-MaLR|MLT1E1A	+	chr4	99267670	99275051	AP002026.1|ENST00000510764.1	+	99267670,99274124,99274961	99267836,99274255,99275051	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	231072232	231072255	231072232	+	RAMPAGE_only	5	5	20	0.453956	4.021928	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231066903	231075566	PSMD1|ENST00000444007.1	+	231066903,231070024,231072332,231075510	231067111,231070168,231072415,231075566	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	46808897	46808908	46808897	+	RAMPAGE_only	6	6	10	0.226978	3.121928	chr10	46808727	46809110	LINE|L2|L2	-	chr10	46786732	46811989	BMS1P5|NR_003611.2	+	46786732,46788391,46789496,46790961,46794726,46795805,46796671,46798028,46808995	46786895,46788600,46789686,46791041,46794915,46795953,46796793,46798168,46811989	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	94191859	94191868	94191867	-	RAMPAGE_only	4	4	8	0.181582	2.807355	chr1	94191676	94191839	DNA|hAT-Charlie|MER5A1	-	chr1	94176612	94195940	ARHGAP29|ENST00000482481.1	-	94176612,94177851,94179724,94184150,94184871,94185341,94186498,94188836,94189215,94189925	94177720,94178167,94179957,94184288,94185060,94185481,94186597,94188941,94189352,94195940	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	93464029	93464036	93464035	+	RAMPAGE_only	3	3	7	0.158885	2.584963	chr9	93463900	93464049	SINE|MIR|MIR	-	chr9	93452383	93532589	FAM120A|ENST00000446420.2	+	93452383,93471140,93476255,93497470,93498789,93515666,93515982,93527154,93529352,93532154	93452389,93471387,93476338,93497599,93498886,93515767,93516269,93527242,93529580,93532589	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	19386313	19386334	19386313	-	High_confidence	8	8	25	0.567445	4.142915	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.920000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	30624357	30624382	30624357	+	High_confidence	5	5	17	0.385863	3.155639	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.941176
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	71066293	71066294	71066293	-	RAMPAGE_only	15	15	18	0.408560	3.614369	chr1	71066049	71066307	LINE|CR1|L3b	+	chr1	71063296	71067513	ZRANB2|ENST00000477096.1	-	71063296,71065677	71065137,71067513	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	159397535	159397550	159397549	-	RAMPAGE_only	2	2	7	0.158885	2.584963	chr2	159397487	159397571	DNA|TcMar-Mariner|MADE2	+	chr2	159386373	159419867	MSTRG.14348.12	-	159386373,159389344,159395768,159400598,159404848,159405021,159412334,159419779	159386607,159389485,159398894,159400664,159404910,159405114,159412545,159419867	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	71379926	71379975	71379926	+	High_confidence	8	8	29	0.658236	4.323161	chr2	71379856	71379996	DNA|TcMar-Tigger|MER44D	+	chr2	71380175	71398757	ZNF638|ENST00000491843.2	+	71380175,71380512,71380837,71396140,71398700	71380280,71380565,71380903,71396191,71398757	0.586207
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	213923806	213923824	213923823	+	RAMPAGE_only	3	4	8	0.181582	2.521641	chr2	213921220	213924593	LINE|L1|L1PA14	-	chr2	213284454	214241376	SPAG16|ENST00000452556.5	+	213284454,213296063,213297261,213340162,213350527,213364075,213375009,213489962,213862484,213929959,214013950,214108195,214149139,214238135	213284619,213296128,213297357,213340270,213350645,213364145,213375119,213490090,213862628,213930145,214014077,214108261,214149266,214241376	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	96638022	96638042	96638022	-	High_confidence	3	3	7	0.158885	2.521641	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	27688764	27688765	27688764	+	RAMPAGE_only	5	5	8	0.181582	2.521641	chr12	27688757	27688967	SINE|MIR|MIRc	+	chr12	27682623	27693127	PPFIBP1|ENST00000539326.1	+	27682623,27688297,27689014,27691748,27692590,27692795	27682703,27688423,27689203,27691928,27692656,27693127	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	188334317	188334337	188334327	+	RAMPAGE_only	2	2	8	0.181582	2.807355	chr2	188334250	188334352	SINE|MIR|MIRb	-	chr2	188293817	188594281	GULP1|ENST00000409609.5	+	188293817,188383762,188477658,188483430,188522755,188529096,188541180,188569238,188570027,188584264,188587854,188593939	188294393,188383889,188477730,188483492,188522827,188529195,188541318,188569355,188570120,188584403,188587949,188594281	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	147173176	147173226	147173203	+	High_confidence	4	6	19	0.431258	3.787144	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.894737
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	80226777	80226839	80226817	+	RAMPAGE_only	31	31	195	4.426072	6.678942	chr6	80226857	80226986	SINE|MIR|MIR1_Amn	+	chr6	80106646	80346270	BCKDHB|ENST00000320393.8	+	80106646,80127546,80129160,80167677,80168874,80171281,80200933,80203101,80273134,80343663	80106889,80127624,80129229,80167811,80169030,80171390,80201031,80203212,80273221,80346270	0.528205
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	43508342	43508362	43508342	+	RAMPAGE_only	3	6	12	0.272374	2.751629	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	101466869	101466892	101466874	-	RAMPAGE_only	12	12	66	1.498055	5.464615	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.878788
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	110170695	110170716	110170695	+	RAMPAGE_only	16	17	37	0.839819	4.661760	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	93687762	93687773	93687762	-	High_confidence	8	8	13	0.295071	3.418296	chr10	93687750	93687993	SINE|MIR|MIRb	+	chr10	93685252	93687941	FRA10AC1|ENST00000482719.1	-	93685252,93687403	93685359,93687941	0.846154
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	124943305	124943306	124943305	+	RAMPAGE_only	7	8	8	0.181582	2.521641	chr10	124943355	124943507	SINE|Alu|AluJr	+	chr10	124942122	124987436	ZRANB1|NM_017580.2	+	124942122,124966593,124971964,124973644,124974199,124981708,124983174,124983458,124984773	124943307,124966781,124972118,124973716,124974398,124981829,124983304,124983688,124987436	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	73982163	73982169	73982163	-	High_confidence	17	19	34	0.771725	3.217351	chr2	73982060	73982404	LINE|L2|L2c	-	chr2	73957966	73981439	DGUOK-AS1|NR_104030.1	-	73957966,73981134	73958207,73981439	0.970588
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	2233662	2233665	2233662	-	RAMPAGE_only	3	3	8	0.181582	2.807355	chr19	2233590	2233758	SINE|Alu|AluJb	+	chr19	2233153	2236263	PLEKHJ1|ENST00000588450.1	-	2233153,2234149,2236154	2234061,2235990,2236263	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	80369531	80369575	80369568	+	High_confidence	13	13	40	0.907912	4.781687	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.775000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	10723291	10723297	10723291	-	RAMPAGE_only	2	2	7	0.158885	2.584963	chr17	10722980	10723244	SINE|Alu|AluSc8	-	chr17	10714675	10730023	TMEM220|ENST00000455996.6	-	10714675,10723269,10725010,10726203,10729779	10715588,10723329,10725134,10726264,10730023	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	22919977	22919989	22919982	+	RAMPAGE_only	7	8	18	0.408560	3.836592	chr11	22919517	22920231	LTR|ERV1|LTR30	-	chr11	22829421	22945393	AC006299.1|ENST00000499625.1	+	22829421,22834906,22838228,22920517,22943980	22829611,22835064,22838364,22920649,22945393	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	53811930	53811942	53811930	-	High_confidence	13	13	40	0.907912	4.660671	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.850000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	168669784	168669804	168669803	-	RAMPAGE_only	4	5	11	0.249676	2.846439	chr5	168669607	168669760	SINE|MIR|MIRc	-	chr5	168661732	168883338	SLIT3|ENST00000404867.7	-	168661732,168669782,168671197,168673176,168683965,168685686,168686978,168692606,168696291,168700581,168707975,168710894,168712282,168722255,168722932,168724415,168748301,168749471,168752954,168753863,168760861,168762538,168772780,168774234,168785906,168789559,168795506,168806445,168817299,168823259,168844583,168883264	168666689,168669991,168671483,168673331,168684096,168685927,168687116,168692700,168696431,168700679,168708121,168711058,168712354,168722327,168723004,168724484,168748434,168749635,168753098,168754007,168760936,168762689,168772944,168774378,168785978,168789631,168795578,168806587,168817463,168823331,168844655,168883338	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	50785180	50785258	50785222	+	RAMPAGE_only	7	7	34	0.771725	4.413910	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.882353
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	78388881	78388896	78388895	+	RAMPAGE_only	4	5	16	0.363165	3.640224	chr5	78388798	78388903	LINE|CR1|L3	-	chr5	78360610	78476026	SCAMP1|ENST00000618166.4	+	78360610,78415519,78416540,78418774,78421800,78449932,78459244,78475503	78360728,78415618,78416649,78418903,78421960,78450034,78459362,78476026	0.812500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	70676492	70676510	70676509	-	RAMPAGE_only	5	5	10	0.226978	2.947703	chr15	70676255	70676461	SINE|MIR|MIRb	-	chr15	70669093	70671973	UACA|ENST00000559290.1	-	70669093,70671038	70669462,70671973	0.600000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	106278226	106278236	106278226	+	High_confidence	2	2	7	0.158885	2.584963	chr9	106277947	106278267	LINE|RTE-X|L4_C_Mam	+	chr9	106278391	106604795	LINC01505|ENST00000435485.5	+	106278391,106279100,106499486,106500356,106558471,106588376,106603755	106278472,106279190,106499612,106500505,106558583,106588464,106604795	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	223759086	223759087	223759086	+	High_confidence	10	10	12	0.272374	3.251629	chr1	223759082	223759137	SINE|Alu|AluJr	-	chr1	223758225	223776018	CAPN2|ENST00000487223.5	+	223758225,223761580,223762185,223764149,223766366,223769840,223770446,223771808,223772180,223774833	223759481,223761617,223762251,223764207,223766431,223769909,223770525,223771925,223772239,223776018	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	208542671	208542700	208542699	+	High_confidence	15	15	31	0.703632	4.681728	chr2	208542564	208543130	LTR|ERVL|MLT2B3	-	chr2	208542641	208825587	LOC101927960|NR_136588.1	+	208542641,208572012,208656825,208819551,208824194,208825398	208542991,208572167,208656989,208819655,208824350,208825587	0.774194
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	130720030	130720049	130720030	-	RAMPAGE_only	3	3	12	0.272374	2.732159	chr7	130719055	130720081	LINE|L2|L2a	+	chr7	130668645	130687432	TSGA13|NM_001304968.1	-	130668645,130671660,130672733,130679154,130680945,130683593,130685187,130686443,130686830	130669183,130671788,130672876,130679367,130681017,130683672,130685360,130686543,130687432	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	133254781	133254851	133254781	-	High_confidence	12	12	33	0.749028	4.635007	chr8	133254749	133254865	LINE|L2|L2b	+	chr8	133246626	133254882	NDRG1|ENST00000521664.1	-	133246626,133247874,133248714,133250439,133254538	133246663,133247926,133248771,133250543,133254882	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	132285531	132285558	132285557	-	High_confidence	21	35	125	2.837225	6.413628	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.776000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	34369406	34369458	34369434	+	RAMPAGE_only	3	3	23	0.522049	3.975418	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.869565
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	1021534	1021535	1021534	-	RAMPAGE_only	7	7	9	0.204280	2.725481	chr11	1021368	1021648	SINE|Alu|AluSx	-	chr11	1012820	1036706	MUC6|ENST00000421673.6	-	1012820,1013898,1015761,1019274,1020089,1020683,1021214,1023508,1023946,1024843,1025181,1025804,1025999,1026326,1026940,1027140,1027267,1027684,1027964,1028225,1028645,1028888,1029045,1029227,1029494,1030212,1030572,1030946,1031168,1031606,1031812,1033012,1036603	1013633,1014001,1018770,1019496,1020257,1020734,1021277,1023652,1024103,1025083,1025367,1025915,1026141,1026478,1027050,1027193,1027517,1027817,1028059,1028387,1028783,1028961,1029150,1029366,1029615,1030335,1030780,1031056,1031259,1031733,1032053,1033075,1036706	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	66937436	66937448	66937447	+	RAMPAGE_only	4	4	11	0.249676	2.913977	chr1	66937303	66937607	SINE|Alu|AluSz	+	chr1	66925041	66985684	MSTRG.1027.8	+	66925041,66926141,66946149,66958058,66958850,66959678,66963087,66970807,66971654,66972896,66976594,66981778,66984571	66925095,66940052,66946295,66958220,66958983,66959743,66963160,66970959,66971736,66972991,66976722,66981918,66985684	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	153119468	153119469	153119468	-	RAMPAGE_only	6	6	8	0.181582	2.750000	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112113	153113515	SPRR2F|ENST00000468739.1	-	153112113,153113473	153112752,153113515	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	88667593	88667676	88667634	+	RAMPAGE_only	4667	4871	21530	488.683715	6.415355	chr10	88667660	88667752	DNA|hAT-Ac|OldhAT1	+	chr10	88664457	88678814	LIPF|ENST00000355843.2	+	88664457,88665478,88667286,88667568,88668656,88669836,88671828,88673587,88675585,88676208,88678444	88664491,88665559,88667402,88667686,88668756,88669946,88671965,88673734,88675657,88676280,88678814	0.983744
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	47067498	47067518	47067498	-	High_confidence	483	516	1575	35.749041	5.884391	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.954286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	2768846	2768863	2768846	+	High_confidence	4	4	8	0.181582	2.500000	chr6	2768884	2768965	SINE|MIR|MIRc	+	chr6	2768772	2785745	WRNIP1|ENST00000380764.1	+	2768772,2770119,2779262,2783405,2784323,2785006	2768882,2770361,2779492,2783561,2784403,2785745	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	39185769	39185770	39185769	+	RAMPAGE_only	7	7	7	0.158885	2.521641	chr4	39185702	39185800	DNA|hAT-Ac|OldhAT1	+	chr4	39182547	39219133	WDR19|ENST00000506503.1	+	39182547,39185725,39186538,39189655,39194543,39199477,39203641,39205153,39205562,39214600,39215840,39216095,39217133,39217986	39182563,39185817,39186604,39189781,39194659,39199593,39203722,39205266,39205736,39214671,39216013,39216210,39217240,39219133	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	50387647	50387655	50387647	+	RAMPAGE_only	10	14	24	0.544747	4.251629	chr22	50387583	50387737	DNA|hAT-Blackjack|MER63B	-	chr22	50372071	50444391	PPP6R2|ENST00000216061.9	+	50372071,50388985,50391866,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50436987,50437505,50437842,50438173,50438598,50439700,50439960,50440800,50443865,50444198	50372150,50389111,50392015,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437068,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50444391	0.791667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	79919512	79919527	79919526	+	High_confidence	3	3	9	0.204280	2.947703	chr17	79919488	79919611	SINE|MIR|MIR3	+	chr17	79919356	79924010	LOC101928738|NR_110851.1	+	79919356,79922690	79919576,79924010	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	28090231	28090232	28090231	+	High_confidence	13	13	15	0.340467	3.378783	chr8	28089941	28090482	LTR|ERVL|LTR66	+	chr8	28090230	28191156	ELP3|ENST00000521015.5	+	28090230,28097218,28099827,28106712,28107912,28110369,28113018,28129501,28132277,28137697,28155941,28158567,28160228,28161996,28189648	28090332,28097318,28099966,28106783,28107976,28110438,28113173,28129663,28132404,28137891,28156032,28158633,28160456,28162078,28191156	0.933333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	127765174	127765246	127765174	-	RAMPAGE_only	7	7	44	0.998703	4.907962	chr2	127765110	127765160	LINE|CR1|L3	-	chr2	127701021	127811147	WDR33|ENST00000322313.8	-	127701021,127708676,127709489,127709692,127713582,127717154,127719264,127721835,127722590,127722957,127723252,127724332,127724886,127725060,127726650,127763061,127764827,127765173,127768188,127768932,127770777,127811011	127706552,127708892,127709582,127709856,127714021,127717263,127720353,127721988,127722730,127723044,127723347,127724443,127724965,127725215,127726777,127763159,127764979,127765269,127768293,127769001,127771004,127811147	0.681818
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	77701658	77701659	77701658	-	High_confidence	7	7	11	0.249676	2.550341	chr1	77701559	77701660	SINE|Alu|AluJb	+	chr1	77697608	77701651	USP33|ENST00000533928.1	-	77697608,77701368	77697931,77701651	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	31530853	31530878	31530877	-	RAMPAGE_only	6	7	19	0.431258	3.614369	chr5	31530667	31530954	LINE|L2|L2c	+	chr5	31400496	31532061	DROSHA|ENST00000511367.6	-	31400496,31405676,31406852,31409055,31409249,31410745,31421271,31422786,31424426,31429474,31431575,31435764,31437238,31448546,31449280,31451532,31464235,31466181,31467938,31472062,31483553,31484880,31486490,31493206,31495285,31504554,31508620,31511034,31514987,31515453,31521122,31526078,31529039,31530797,31531989	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31422944,31424471,31429545,31431678,31435864,31437298,31448607,31449419,31451640,31464343,31466281,31468063,31472232,31483628,31484962,31486562,31493293,31495372,31504635,31508775,31511176,31515219,31515564,31521215,31526912,31529105,31530924,31532061	0.842105
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	44718605	44718608	44718605	-	High_confidence	2	2	7	0.158885	2.584963	chr19	44718492	44718563	SINE|MIR|MIR3	-	chr19	44715563	44718685	AC243964.2|ENST00000591312.1	-	44715563,44718453	44716083,44718685	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	6208681	6208682	6208681	-	High_confidence	270	270	270	6.128407	3.962279	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.981481
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	16055580	16055620	16055580	-	RAMPAGE_only	3	3	9	0.204280	2.641604	chr17	16054947	16055692	LINE|L1|L1PA13	+	chr17	16021717	16057935	MSTRG.10394.1	-	16021717,16039432,16040440,16046950,16048844,16052155,16057906	16034944,16039654,16040494,16047093,16051809,16057737,16057935	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	203015483	203015519	203015483	+	High_confidence	22	22	101	2.292478	5.280633	chr2	203015479	203015763	SINE|Alu|AluSx1	-	chr2	203015790	203041857	NBEAL1|ENST00000492870.1	+	203015790,203016155,203041764	203015864,203016427,203041857	0.881188
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	154928480	154928504	154928503	+	High_confidence	54	54	99	2.247083	5.919097	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.919192
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	32446970	32447003	32446977	+	High_confidence	42	46	131	2.973412	5.677224	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.992366
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	95437783	95437816	95437815	-	RAMPAGE_only	4	4	14	0.317769	3.521641	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.642857
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	33068841	33068912	33068841	-	RAMPAGE_only	6	8	55	1.248379	4.072028	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.963636
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	1021494	1021506	1021505	-	High_confidence	3	4	6	0.136187	2.584963	chr11	1021368	1021648	SINE|Alu|AluSx	-	chr11	1019904	1020734	MUC6|ENST00000527242.2	-	1019904,1020683	1020257,1020734	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	87864705	87864723	87864705	-	RAMPAGE_only	2	2	8	0.181582	3.000000	chr16	87864599	87865066	LTR|ERVK|LTR22B	-	chr16	87830022	87863639	SLC7A5|ENST00000565644.5	-	87830022,87834413,87836497,87837844,87838713,87839701,87840428,87841049,87851723,87863589	87833025,87834591,87836647,87837941,87838817,87839825,87840473,87841155,87851849,87863639	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	8776387	8776429	8776425	-	High_confidence	30	30	118	2.678341	5.474389	chr11	8776369	8776474	LINE|L2|L2b	-	chr11	8730980	8776679	ST5|ENST00000533016.1	-	8730980,8750620,8776191	8731209,8750725,8776679	0.686441
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	37988092	37988137	37988134	+	High_confidence	2	2	11	0.249676	3.095795	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.545455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	95516119	95516123	95516120	+	High_confidence	6	9	15	0.340467	3.039149	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.933333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	4610520	4610521	4610520	+	High_confidence	5	5	7	0.158885	2.584963	chr17	4610403	4610704	SINE|Alu|AluJb	+	chr17	4610448	4617650	LINC01996|ENST00000573270.1	+	4610448,4616762	4610833,4617650	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	15703573	15704088	15703753	-	RAMPAGE_only	151	154	2667	60.535043	7.421517	chr16	15703608	15703803	SINE|Alu|AluJo	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.989126
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	57761923	57761941	57761923	-	High_confidence	4	4	12	0.272374	3.418296	chr18	57761672	57761967	SINE|Alu|AluSc	+	chr18	57684117	57761104	MSTRG.11928.10	-	57684117,57685071,57688298,57691806,57694581,57695170,57695449,57697617,57697794,57701038,57701214,57704554,57706489,57731626,57748833	57684192,57685115,57688507,57691997,57694670,57695329,57695532,57697688,57697867,57701100,57701313,57704668,57706587,57731832,57761104	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	133255357	133255391	133255357	-	High_confidence	1	1	10	0.226978	2.947703	chr8	133255180	133255391	SINE|MIR|MIRb	+	chr8	133237175	133256228	NDRG1|ENST00000519278.5	-	133237175,133242022,133244354,133246615,133247874,133248714,133250439,133254538	133239119,133242074,133244390,133246663,133247926,133248771,133250543,133256228	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	37298760	37298761	37298760	+	RAMPAGE_only	7	7	7	0.158885	2.807355	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	20423688	20423704	20423697	-	RAMPAGE_only	38	57	166	3.767835	5.532010	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.722892
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	95503018	95503082	95503052	-	RAMPAGE_only	24	24	142	3.223088	6.051654	chr10	95503034	95503135	LTR|ERV1?|LTR103b_Mam	-	chr10	95399016	95561373	MSTRG.3274.25	-	95399016,95406117,95410632,95421960,95422189,95432447,95437489,95441125,95491034,95493164,95508208,95554668,95561299	95399189,95406147,95410777,95422073,95422216,95432576,95437555,95441180,95491120,95507813,95554097,95561251,95561373	0.985915
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	73080369	73080370	73080369	-	High_confidence	65	65	65	1.475357	5.193532	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.953846
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	48430180	48430190	48430182	-	High_confidence	3	5	13	0.295071	3.418296	chr3	48430133	48430258	SINE|MIR|MIRb	+	chr3	48403853	48430051	PLXNB1|ENST00000296440.10	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48430007	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48430051	0.846154
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	152412488	152412529	152412528	-	High_confidence	17	18	45	1.021401	4.970573	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.977778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	100837584	100837641	100837584	-	High_confidence	3	3	15	0.340467	3.373557	chr3	100837471	100837784	SINE|Alu|AluSx1	+	chr3	100830577	100837323	ABI3BP|ENST00000487249.1	-	100830577,100832263,100833124,100834683,100835600,100837123	100830634,100832350,100833157,100834773,100835660,100837323	0.933333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	168137436	168137459	168137436	-	High_confidence	4	4	15	0.340467	3.324863	chr1	168137391	168137473	LINE|L2|L2b	-	chr1	168085277	168137583	GPR161|ENST00000367835.1	-	168085277,168087584,168090563,168096507,168104476,168114455,168137164	168085796,168087704,168090668,168097232,168104894,168114549,168137583	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	43167346	43167347	43167346	-	RAMPAGE_only	180	185	202	4.584956	6.250005	chr17	43167246	43167698	LTR|ERV1|LTR2	-	chr17	43148367	43170316	AC060780.1|ENST00000635600.1	-	43148367,43159422,43166979,43170125	43148783,43159727,43167849,43170316	0.866337
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	69996417	69996438	69996420	-	RAMPAGE_only	10	10	27	0.612841	4.328600	chr16	69996297	69996477	SINE|MIR|MIRb	+	chr16	69976544	70021930	MSTRG.9832.4	-	69976544,69976810,69978076,69978221,69982349,69982657,69986380,69990596,69996389,70010750,70011840,70014103,70018046,70021823	69976732,69978003,69978112,69978282,69982494,69982757,69986509,69996226,69996468,70010856,70011929,70014167,70018097,70021930	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	65642891	65642945	65642932	+	High_confidence	13	17	61	1.384566	5.280782	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	0.967213
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	237510067	237510070	237510069	+	High_confidence	25	35	41	0.930610	4.804508	chr2	237509843	237510275	LINE|RTE-X|L4_B_Mam	+	chr2	237510086	237553993	MLPH|ENST00000495439.5	+	237510086,237510988,237518538,237519909,237525600,237527376,237540347,237542566,237546605,237549220,237552336,237553565	237510795,237511101,237518648,237520029,237525805,237527516,237540533,237542659,237546683,237549278,237552437,237553993	0.951220
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	217937095	217937162	217937115	-	High_confidence	12	12	71	1.611544	5.570011	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.605634
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	109546077	109546108	109546077	-	RAMPAGE_only	6	6	16	0.363165	3.625000	chr2	109545815	109546035	LINE|L2|L2a	-	chr2	109542796	109613657	SEPT10|NM_001321515.1	-	109542796,109546049,109553086,109564365,109565762,109567814,109574580,109585125,109585720,109613111	109544324,109546237,109553219,109564534,109565859,109567976,109574767,109585321,109585838,109613657	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	90467511	90467523	90467511	+	RAMPAGE_only	3	3	8	0.181582	2.521641	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	48683361	48683363	48683362	+	High_confidence	44	75	76	1.725033	4.826295	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.947368
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	132579777	132579810	132579777	+	High_confidence	2	2	10	0.226978	2.947703	chr5	132579709	132579830	LINE|L1|L1ME4a	-	chr5	132579744	132588807	RAD50|ENST00000487596.1	+	132579744,132587561,132587923,132588686	132580066,132587690,132588089,132588807	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	96387545	96387562	96387545	-	High_confidence	2	2	7	0.158885	2.584963	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	75640359	75640404	75640359	+	RAMPAGE_only	5	5	27	0.612841	3.884155	chr6	75640318	75640402	DNA|TcMar-Tigger|Tigger7	+	chr6	75602223	75663505	MSTRG.21274.4	+	75602223,75621531,75622750,75623899,75633580,75634706,75637712,75659261,75663220	75602576,75621625,75622858,75623960,75633726,75637633,75647801,75659407,75663505	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	109532697	109532729	109532728	+	RAMPAGE_only	5	5	15	0.340467	3.589898	chr4	109532709	109532882	LTR|ERVL|LTR41B	-	chr4	109433814	109540896	SEC24B|ENST00000265175.5	+	109433814,109462900,109473003,109481676,109491326,109494614,109506327,109510008,109511956,109513746,109516527,109520365,109521116,109521419,109524817,109525345,109526225,109527321,109530288,109531384,109532638,109533592,109538492,109539560	109434002,109463644,109473186,109481781,109491407,109494856,109506512,109510111,109512083,109513856,109516640,109520484,109521172,109521626,109524941,109525504,109526399,109527432,109530464,109531522,109532743,109533685,109538596,109540896	0.933333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	33141895	33141923	33141895	-	RAMPAGE_only	5	5	12	0.272374	3.459432	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33084583	33161465	CSTF3|ENST00000323959.8	-	33084583,33085712,33085894,33086987,33090531,33092270,33096305,33096834,33098689,33099033,33099607,33102176,33103106,33105566,33105882,33105997,33107902,33108385,33141666,33141884,33161298	33085289,33085773,33085989,33087141,33090727,33092340,33096408,33096978,33098764,33099150,33099717,33102339,33103184,33105693,33105917,33106064,33108000,33108418,33141762,33141986,33161465	0.583333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	82821289	82821298	82821289	-	High_confidence	2	2	7	0.158885	2.807355	chr4	82821266	82821574	SINE|Alu|AluSx3	+	chr4	82819037	82821451	SEC31A|ENST00000505479.1	-	82819037,82821036	82819253,82821451	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	30537610	30537694	30537693	+	RAMPAGE_only	9	9	32	0.726330	4.413716	chr8	30537606	30537733	SINE|MIR|MIR	+	chr8	30387207	30547483	MSTRG.23508.8	+	30387207,30477798,30479314,30504285,30535064	30474856,30477837,30479377,30534760,30547483	0.968750
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	77753043	77753054	77753043	-	RAMPAGE_only	2	2	7	0.158885	2.521641	chr5	77752992	77753785	LTR|ERV1|MER4B-int	-	chr5	77740678	77754345	MSTRG.19678.1	-	77740678,77752876	77752540,77754345	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	82195243	82195294	82195264	-	RAMPAGE_only	2	2	13	0.295071	3.418296	chr17	82195126	82195215	SINE|Alu|AluJb	-	chr17	82188223	82194255	CCDC57|ENST00000578187.1	-	82188223,82193755	82188419,82194255	0.538462
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	1407819	1407834	1407833	-	High_confidence	3	4	8	0.181582	2.521641	chr1	1407717	1407798	SINE|Alu|AluYh9	-	chr1	1401895	1407313	MRPL20|NM_017971.3	-	1401895,1405808,1406908,1407130	1402256,1405886,1407019,1407313	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	64007058	64007169	64007079	+	RAMPAGE_only	27	27	111	2.519456	6.052824	chr1	64007065	64007141	SINE|MIR|MIRc	+	chr1	64009302	64181492	ROR1|ENST00000545203.2	+	64009302,64049690,64050685,64137368,64140108,64142404,64158980,64177427	64009376,64049978,64050716,64137496,64140426,64142650,64159192,64181492	0.657658
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	28090301	28090314	28090313	+	High_confidence	5	5	15	0.340467	2.732915	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.933333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	149428516	149428627	149428516	+	RAMPAGE_only	15	16	68	1.543451	4.811774	chr5	149428460	149428678	LINE|L1|L1MB5	+	chr5	149406963	149436724	MSTRG.20299.11	+	149406963,149421480,149423185,149424089,149427079,149428128	149407078,149421601,149423309,149424397,149428095,149436724	0.985294
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	77109562	77109595	77109594	+	RAMPAGE_only	3	4	9	0.204280	2.725481	chr7	77109386	77109689	SINE|Alu|AluJb	+	chr7	77008475	77237617	MSTRG.22498.8	+	77008475,77072559,77167657,77236946	77011240,77117201,77167824,77237617	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	159180640	159180662	159180661	-	RAMPAGE_only	3	4	6	0.136187	2.584963	chr5	159180580	159180882	DNA|hAT-Charlie|MER33	-	chr5	159158520	159207634	MSTRG.20379.9	-	159158520,159161265,159162931,159168872,159169678	159159035,159161622,159163079,159169055,159207634	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	32912180	32912230	32912190	-	High_confidence	2	2	15	0.340467	3.664498	chr10	32912176	32918355	LINE|L1|L1PA5	+	chr10	32901563	32912064	ITGB1|ENST00000494395.1	-	32901563,32908367,32911526,32911885	32901635,32908534,32911670,32912064	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	37580223	37580224	37580223	-	High_confidence	6	6	8	0.181582	2.521641	chr22	37580197	37580334	SINE|MIR|MIR3	+	chr22	37570245	37580080	LGALS2|ENST00000215886.5	-	37570245,37570575,37571848,37579899	37570412,37570735,37571931,37580080	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	23243634	23243635	23243634	+	High_confidence	26	26	28	0.635539	4.392747	chr8	23243551	23243732	LTR|ERV1|LTR21A	+	chr8	23243636	23262000	CHMP7|NM_152272.4	+	23243636,23246255,23249209,23255246,23256459,23258032,23258329,23258731,23259065,23260143,23260537	23243844,23246994,23249381,23255432,23256593,23258081,23258449,23258830,23259126,23260323,23262000	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	149407206	149407258	149407206	+	High_confidence	3	3	16	0.363165	3.640224	chr5	149407160	149407292	SINE|MIR|MIR3	+	chr5	149407244	149412768	CARMN|ENST00000614517.1	+	149407244	149412768	0.937500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	87469949	87469950	87469949	+	High_confidence	10	14	14	0.317769	2.950212	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87469949	87521413	CYTOR|ENST00000437561.1	+	87469949,87470149,87521206	87470042,87470304,87521413	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	79998981	79998983	79998981	+	RAMPAGE_only	8	12	14	0.317769	3.521641	chr6	79997894	79999302	LINE|L1|L1MEc	-	chr6	80003886	80042527	TTK|ENST00000509894.5	+	80003886,80005841,80007808,80008385,80010813,80011433,80011728,80011885,80013278,80014462,80022323,80026380,80027884,80031466,80034984,80035265,80036474,80037966,80039695,80040195,80040605,80042118	80004713,80005982,80008031,80008492,80010957,80011548,80011801,80011980,80013366,80014586,80022472,80026514,80028011,80031559,80035142,80035417,80036599,80038047,80039872,80040280,80040703,80042527	0.785714
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	17336685	17336727	17336685	+	High_confidence	15	16	41	0.930610	5.259991	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.975610
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	9792250	9792255	9792250	-	High_confidence	3	4	10	0.226978	3.321928	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	54945388	54945415	54945388	-	RAMPAGE_only	2	3	9	0.204280	2.500000	chr18	54945305	54945474	SINE|MIR|MIRc	-	chr18	54901510	54942950	CCDC68|ENST00000432185.5	-	54901510,54907785,54917912,54919270,54928799,54934819,54936832,54937956,54940996,54942674	54904415,54907862,54917996,54919376,54928882,54934948,54936958,54938097,54941083,54942950	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	195689360	195689407	195689360	+	High_confidence	8	8	22	0.499352	3.845351	chr3	195689376	195689522	LINE|L1|L1MC5a	+	chr3	195689377	195708807	MUC20-OT1|ENST00000451216.6	+	195689377,195689545,195708133,195708428,195708746	195689438,195689608,195708268,195708513,195708807	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	42721249	42721263	42721262	-	High_confidence	4	4	8	0.181582	2.807355	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	12566445	12566484	12566445	+	RAMPAGE_only	2	3	17	0.385863	3.000000	chr8	12565979	12567003	LTR|ERVK|LTR5A	+	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.823529
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	143039256	143039267	143039256	+	High_confidence	9	9	25	0.567445	4.053509	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.920000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	32684260	32684272	32684271	-	High_confidence	6	7	11	0.249676	3.121928	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32653863	32684284	MYO1D|ENST00000582217.1	-	32653863,32654476,32659114,32684174	32653947,32654621,32659338,32684284	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	50093525	50093574	50093573	+	High_confidence	6	6	38	0.862517	4.266764	chr3	50093477	50093585	SINE|Alu|FLAM_C	+	chr3	50093717	50108305	RBM5|ENST00000395174.6	+	50093717,50099981,50103082,50104247,50105076,50105548,50106766,50107481,50108069,50108231	50093875,50100051,50103166,50104308,50105142,50105709,50106864,50107569,50108147,50108305	0.842105
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	194649182	194649212	194649189	-	High_confidence	3	3	14	0.317769	3.085055	chr3	194649170	194649366	LINE|L2|L2c	+	chr3	194642172	194649019	LSG1|ENST00000460584.1	-	194642172,194644572,194646163,194648680	194642247,194644746,194646243,194649019	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	37924224	37924248	37924224	+	RAMPAGE_only	10	10	33	0.749028	4.389365	chr22	37924127	37924386	LINE|L2|L2c	-	chr22	37906296	37942822	MICALL1|ENST00000215957.10	+	37906296,37911951,37912350,37917706,37919035,37921971,37924659,37925660,37927410,37931798,37932552,37932797,37933038,37937079,37937745,37940708	37906568,37912000,37912492,37917795,37919178,37922426,37924717,37926043,37927826,37931933,37932679,37932888,37933112,37937194,37937792,37942822	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	151687233	151687245	151687233	-	High_confidence	12	13	47	1.066797	4.708324	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.978723
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	236541468	236541469	236541468	+	RAMPAGE_only	6	6	6	0.136187	2.584963	chr1	236541361	236541498	LINE|L1|L1ME4b	-	chr1	236523988	236543609	LGALS8|ENST00000366583.6	+	236523988,236525967,236537496,236538878,236540563,236541653,236542760	236524061,236526115,236537585,236539089,236540683,236541710,236543609	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	155646948	155646984	155646974	-	RAMPAGE_only	8	12	39	0.885214	4.701944	chr3	155646900	155647041	LTR|ERVL-MaLR|MLT1F1	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	0.897436
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	103353922	103353957	103353956	+	High_confidence	11	11	18	0.408560	3.503258	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.944444
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	50172544	50172595	50172544	+	High_confidence	11	12	36	0.817121	4.503258	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172549	50173370	LINC01273|ENST00000427333.5	+	50172549,50172922,50173201	50172788,50173017,50173370	0.527778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	105970445	105970484	105970451	+	RAMPAGE_only	3	3	18	0.408560	3.454822	chr4	105970389	105970602	LINE|CR1|Plat_L3	+	chr4	105959058	105971670	NPNT|ENST00000504787.1	+	105959058,105970384	105959126,105971670	0.944444
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	30971586	30971763	30971762	+	High_confidence	13	17	100	2.269780	5.833661	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30976063	MSTRG.16157.21	+	30971438,30972923,30975169	30972172,30973601,30976063	0.970000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	57746128	57746129	57746128	+	High_confidence	25	25	26	0.590143	3.623465	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.961538
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	29647272	29647293	29647292	+	High_confidence	2	2	6	0.136187	2.584963	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	78620056	78620058	78620056	+	High_confidence	13	24	24	0.544747	4.220176	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.791667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	55416039	55416040	55416039	+	RAMPAGE_only	6	7	7	0.158885	2.584963	chr4	55415845	55416154	SINE|Alu|AluJb	-	chr4	55395956	55453397	MSTRG.18424.2	+	55395956,55411613,55417802,55424537,55452238	55396396,55417247,55417985,55424643,55453397	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	39448700	39448723	39448700	-	RAMPAGE_only	7	7	12	0.272374	2.845351	chr5	39448488	39449045	LTR|ERVL|MLT2B3	-	chr5	39393257	39462300	DAB2|ENST00000511792.5	-	39393257,39394229,39462077	39393393,39394421,39462300	0.583333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	134612613	134612619	134612613	-	RAMPAGE_only	3	3	11	0.249676	3.459432	chr5	134612457	134612672	SINE|Alu|AluSz6	+	chr5	134606429	134614903	SAR1B|ENST00000508363.5	-	134606429,134608371,134609570,134612690	134607066,134608503,134609674,134614903	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	226837555	226837580	226837555	+	High_confidence	3	3	8	0.181582	2.750000	chr2	226837548	226837792	SINE|Alu|AluSx1	-	chr2	226837547	226864856	RHBDD1|ENST00000436481.1	+	226837547,226838072,226839408,226864603	226837770,226838154,226839627,226864856	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	66401878	66401899	66401878	+	RAMPAGE_only	5	6	11	0.249676	3.321928	chr15	66401474	66401958	LINE|L2|L2c	-	chr15	66386872	66491544	MAP2K1|NM_002755.3	+	66386872,66435026,66436745,66443279,66444655,66481754,66484989,66487227,66489214,66489717,66490501	66387427,66435237,66436892,66443357,66444707,66481879,66485191,66487292,66489276,66489763,66491544	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	99410046	99410052	99410046	+	High_confidence	3	3	7	0.158885	2.584963	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	128648809	128648853	128648837	+	RAMPAGE_only	2	2	11	0.249676	2.921928	chr7	128648764	128648951	SINE|Alu|AluJb	-	chr7	128641240	128660998	LINC01000|NR_024368.1	+	128641240,128642216,128648791,128651037,128651188	128641379,128642281,128648982,128651095,128660998	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	72111411	72111494	72111432	-	High_confidence	3	4	24	0.544747	4.349649	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72107158	72111443	ANAPC15|ENST00000543050.5	-	72107158,72110087,72110543,72111156,72111411	72107605,72110225,72110603,72111286,72111443	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	128113455	128113471	128113464	-	RAMPAGE_only	5	5	13	0.295071	3.251629	chr9	128113305	128113520	LINE|L2|L2a	+	chr9	128107447	128118586	MSTRG.25090.1	-	128107447,128117709,128117922	128115289,128117835,128118586	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	29077437	29077507	29077486	+	High_confidence	27	27	106	2.405967	5.446405	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.622642
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	133255119	133255132	133255119	-	RAMPAGE_only	3	3	8	0.181582	2.807355	chr8	133255118	133255161	LINE|L2|L2b	+	chr8	133237175	133256228	NDRG1|ENST00000519278.5	-	133237175,133242022,133244354,133246615,133247874,133248714,133250439,133254538	133239119,133242074,133244390,133246663,133247926,133248771,133250543,133256228	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	9221409	9221430	9221424	+	RAMPAGE_only	2	2	9	0.204280	2.750000	chr18	9221463	9221567	LINE|L2|L2a	+	chr18	9102735	9229470	MSTRG.11658.4	+	9102735,9117837,9119325,9119473,9122512,9124873,9126830,9134185,9182381,9195550,9208656,9211583,9216757,9225457	9102797,9117903,9119388,9119590,9122681,9124983,9126907,9134292,9182519,9204544,9208803,9211784,9225122,9229470	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	143849991	143849992	143849991	+	RAMPAGE_only	6	6	7	0.158885	2.584963	chr6	143849659	143850038	LTR|ERVL-MaLR|MLT1C	-	chr6	143843370	143863806	LTV1|NM_032860.3	+	143843370,143844485,143846050,143850130,143857302,143857751,143860425,143862103,143862843,143863085,143863416	143843480,143844617,143846224,143850218,143857444,143858007,143860553,143862243,143862896,143863286,143863806	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	170303782	170303813	170303794	+	RAMPAGE_only	4	6	13	0.295071	3.584963	chr3	170303713	170303992	SINE|Alu|AluSz	+	chr3	170291641	170305977	PRKCI|ENST00000476635.5	+	170291641,170293382,170295910,170297303,170298994,170303039	170291941,170293508,170295990,170297393,170299110,170305977	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	53090970	53090987	53090986	-	High_confidence	6	6	12	0.272374	2.845351	chr1	53090959	53091136	SINE|MIR|MIRb	-	chr1	53087183	53090982	SLC1A7|ENST00000488036.5	-	53087183,53088876,53089799	53088227,53088979,53090982	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	20106855	20106873	20106872	-	High_confidence	3	3	10	0.226978	2.641604	chr2	20105981	20107080	LTR|ERV1|LTR12D	-	chr2	20063855	20106829	AC098828.3|ENST00000430429.1	-	20063855,20106739	20064511,20106829	0.600000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	39809803	39809865	39809858	-	High_confidence	16	30	86	1.952011	5.110562	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.779070
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	135428880	135428916	135428880	-	RAMPAGE_only	4	4	12	0.272374	3.277613	chr6	135428847	135429113	LINE|L2|L2c	-	chr6	135284895	135442685	AHI1|ENST00000475846.6	-	135284895,135286398,135290422,135300499,135301407,135302711,135318518,135323161,135358131,135394775,135404950,135411347,135427166,135428628,135429881,135431207,135433026,135438374,135442581	135285647,135286548,135290525,135300558,135301539,135302817,135318616,135323324,135358187,135394896,135404977,135411544,135427307,135428759,135430000,135431314,135433256,135438498,135442685	0.583333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	130894344	130894423	130894344	-	RAMPAGE_only	11	11	55	1.248379	5.222390	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	0.836364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	37426630	37426649	37426648	+	RAMPAGE_only	3	3	8	0.181582	3.000000	chr9	37426667	37426970	SINE|Alu|AluSx3	+	chr9	37427705	37436989	GRHPR|ENST00000497693.1	+	37427705,37436660	37432138,37436989	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	36079784	36079813	36079812	+	RAMPAGE_only	6	6	10	0.226978	2.646439	chr6	36079718	36079835	DNA|hAT-Charlie|MER3	+	chr6	36029088	36110755	MSTRG.21002.9	+	36029088,36052698,36059288,36072872,36073690,36074048,36075847,36076536,36089680,36090942,36102570,36107454,36108379	36029160,36052828,36059347,36072984,36073720,36074096,36075962,36083113,36089784,36096066,36102649,36107628,36110755	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	8114450	8114502	8114450	+	RAMPAGE_only	3	3	23	0.522049	3.827910	chr20	8108866	8114917	LINE|L1|L1PA3	-	chr20	8150299	8372166	PLCB1|ENST00000630757.1	+	8150299,8371381	8150371,8372166	0.565217
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	128622596	128622621	128622620	+	RAMPAGE_only	2	3	7	0.158885	2.584963	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128653243	MSTRG.22907.3	+	128574750,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294,128629393,128631679,128638773,128642216,128648791,128651037,128651188	128574791,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626530,128629458,128631869,128641379,128642281,128648982,128651095,128653243	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	119217598	119217625	119217624	+	RAMPAGE_only	4	4	11	0.249676	3.121928	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212742	119294638	MSTRG.18838.6	+	119212742,119214069,119217549,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119266299,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119212873,119214222,119217673,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119266333,119267482,119268420,119269837,119272034,119273708,119291261,119294638	0.727273
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	42136462	42136478	42136462	-	High_confidence	2	2	11	0.249676	3.459432	chr17	42136440	42136680	SINE|MIR|MIRb	+	chr17	42128691	42136484	RAB5C|ENST00000550504.5	-	42128691,42130336,42136264	42128800,42130590,42136484	0.727273
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	107091604	107091629	107091628	-	RAMPAGE_only	4	4	12	0.272374	3.277613	chr12	107091327	107092108	LINE|L2|L2a	+	chr12	106991363	107093829	CRY1|ENST00000008527.9	-	106991363,106992786,106992964,106997293,106997487,106997914,106999550,106999941,107001279,107001763,107005105,107022083,107092803	106992001,106992890,106993036,106997386,106997690,106998066,106999862,107000082,107001368,107001948,107005248,107022192,107093829	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	42633304	42633310	42633309	+	High_confidence	4	4	8	0.181582	2.807355	chr3	42633048	42633341	SINE|Alu|AluJr4	-	chr3	42633208	42637000	NKTR|ENST00000460807.2	+	42633208,42634612,42635220,42636867	42633735,42634700,42635366,42637000	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	57814105	57814131	57814130	+	High_confidence	7	7	18	0.408560	3.969816	chr11	57814032	57814187	SINE|Alu|AluJr4	+	chr11	57813916	57815481	CTNND1|ENST00000525821.1	+	57813916,57815393	57814373,57815481	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	80369623	80369635	80369634	+	High_confidence	3	4	11	0.249676	3.121928	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.545455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	23838619	23838662	23838643	-	High_confidence	8	9	40	0.907912	4.668980	chr1	23837780	23838651	LTR|ERV1|LTR1A2	+	chr1	23801886	23838620	HMGCL|ENST00000374487.6	-	23801886,23804399,23808134,23810735,23814189,23816674,23817475,23820509,23826083,23838063	23802564,23804525,23808323,23810799,23814338,23816770,23817583,23820593,23826183,23838620	0.950000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	69237171	69237186	69237185	-	RAMPAGE_only	13	14	55	1.248379	5.258544	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.600000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	160195415	160195439	160195427	-	RAMPAGE_only	3	3	11	0.249676	3.321928	chr2	160195366	160195442	LINE|CR1|L3	-	chr2	160101635	160200252	ITGB6|ENST00000428609.6	-	160101635,160107678,160112079,160123790,160126378,160137433,160138064,160141981,160169211,160172568,160173973,160195368,160196215,160200002	160101834,160107845,160112199,160123888,160126601,160137851,160138199,160142071,160169307,160172730,160174139,160195615,160196420,160200252	0.545455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	128113622	128113668	128113622	-	RAMPAGE_only	2	3	16	0.363165	3.240224	chr9	128113521	128113996	LTR|ERVL-MaLR|MLT1D	+	chr9	128107447	128118586	MSTRG.25090.1	-	128107447,128117709,128117922	128115289,128117835,128118586	0.937500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	134527596	134527597	134527596	+	High_confidence	3487	3550	3630	82.393028	7.181628	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	MSTRG.22989.1	+	134527591,134530642,134537579,134538193,134538934,134541046	134527977,134537157,134537661,134538277,134539017,134541408	0.975758
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	27525738	27525751	27525745	+	High_confidence	4	4	12	0.272374	3.084963	chr1	27525728	27525810	LINE|L2|L2b	+	chr1	27525804	27530561	BX293535.1|ENST00000443579.1	+	27525804,27530359	27525885,27530561	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	125885540	125885566	125885540	-	RAMPAGE_only	4	4	10	0.226978	3.321928	chr10	125885254	125885744	LTR|ERVL-MaLR|MLT1D	+	chr10	125836339	125881315	DHX32|NM_018180.2	-	125836339,125838205,125839000,125840846,125841742,125852292,125852542,125853960,125859602,125866989,125880542	125836855,125838387,125839188,125840996,125841934,125852451,125852642,125854203,125859975,125867183,125881315	0.700000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	47998234	47998280	47998234	+	RAMPAGE_only	45	45	192	4.357978	6.444561	chr8	47995253	47998768	LTR|ERV1|HERVFH21-int	-	chr8	48008399	48064708	UBE2V2|ENST00000523111.6	+	48008399,48043032,48049852,48060681	48008470,48043181,48049978,48064708	0.703125
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	107754779	107754855	107754779	-	RAMPAGE_only	31	43	211	4.789237	6.912046	chr1	107754420	107755105	LINE|L2|L2a	+	chr1	107617583	107749508	VAV3|ENST00000529809.5	-	107617583,107642618,107704549,107704959,107748967,107749461	107617632,107642755,107704650,107705061,107749077,107749508	0.729858
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	51387552	51387560	51387556	+	High_confidence	3	4	9	0.204280	2.750000	chr3	51387476	51387632	SINE|Alu|AluJb	+	chr3	51387687	51389149	MANF|ENST00000482262.1	+	51387687,51388904	51387878,51389149	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	222928575	222928584	222928575	+	RAMPAGE_only	2	2	8	0.181582	2.807355	chr2	222928419	222928591	DNA|hAT-Charlie|MER102c	-	chr2	222909084	222941824	MSTRG.14902.6	+	222909084,222918045,222919063,222921279,222922707,222923077,222924455,222927016,222928861,222930620,222933165,222934529,222941496	222916496,222918155,222919202,222921430,222922831,222923149,222924595,222927189,222928936,222930812,222933280,222934687,222941824	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	6057745	6057746	6057745	-	RAMPAGE_only	8	8	12	0.272374	3.277613	chr7	6057659	6057924	SINE|Alu|AluSx1	-	chr7	6046722	6059056	EIF2AK1|ENST00000463213.5	-	6046722,6048806,6049911,6054545,6058965	6047091,6048844,6050045,6054704,6059056	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	72305913	72305914	72305913	-	High_confidence	7	11	11	0.249676	3.027169	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	13707920	13708077	13708076	+	RAMPAGE_only	22	22	186	4.221791	6.465399	chr11	13708123	13708382	SINE|Alu|AluSx3	+	chr11	13710723	13732346	MSTRG.3851.11	+	13710723,13711927,13714508,13721729	13711808,13713033,13714680,13732346	0.548387
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	35449700	35449725	35449714	+	RAMPAGE_only	4	4	17	0.385863	3.875000	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.764706
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	65429392	65429549	65429548	+	RAMPAGE_only	17	21	140	3.177693	3.682229	chr11	65429519	65429591	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.992857
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	67791731	67791746	67791731	-	RAMPAGE_only	5	5	10	0.226978	2.947703	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701465	67833117	MSTRG.1031.1	-	67701465,67707593,67777457,67831818	67705576,67707712,67777507,67833117	0.600000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	6251215	6251257	6251232	+	RAMPAGE_only	19	20	79	1.793126	4.563310	chr9	6251008	6251757	DNA|hAT-Charlie|Charlie17b	+	chr9	6247910	6257982	MSTRG.24329.8	+	6247910,6250473,6251139,6252865,6253551,6254461,6255967	6248555,6250599,6251265,6252991,6253602,6254553,6257982	0.949367
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	128684466	128684493	128684476	-	RAMPAGE_only	32	32	169	3.835929	5.654705	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.609467
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	143558019	143558020	143558019	+	High_confidence	6	7	7	0.158885	2.584963	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	110179288	110179356	110179297	-	RAMPAGE_only	15	15	158	3.586253	5.880565	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	0.968354
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	61488885	61488894	61488885	+	High_confidence	5	5	9	0.204280	2.503258	chr11	61488729	61489022	LINE|L2|L2b	-	chr11	61488841	61490931	PPP1R32|ENST00000366212.8	+	61488841,61489781,61490500,61490813	61488962,61489946,61490584,61490931	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	131167333	131167341	131167333	-	High_confidence	5	5	12	0.272374	2.845351	chr9	131167152	131167669	LINE|L1|L1ME3B	-	chr9	131133103	131167314	AL157938.2|ENST00000587408.5	-	131133103,131133626,131141677,131159361,131167077	131133215,131133715,131141766,131159463,131167314	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	34536100	34536122	34536100	-	High_confidence	4	4	18	0.408560	3.852169	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	75626279	75626305	75626304	-	High_confidence	5	5	10	0.226978	2.921928	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	45292812	45292832	45292825	+	High_confidence	7	7	21	0.476654	4.121928	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	63984389	63984394	63984389	-	RAMPAGE_only	5	6	9	0.204280	3.169925	chr2	63984330	63984563	SINE|MIR|MIR	+	chr2	63893055	64019072	VPS54|ENST00000272322.8	-	63893055,63897495,63899473,63912344,63912539,63913222,63914181,63916899,63919882,63920445,63921205,63933672,63942464,63944599,63947382,63949036,63962057,63965834,63968956,63972165,63981645,63983863,64018937	63893535,63897590,63899581,63912425,63912661,63913310,63914287,63916963,63919995,63920627,63921335,63934013,63942561,63944655,63947490,63949163,63962443,63965966,63968991,63972244,63981887,63984019,64019072	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	19093580	19093581	19093580	-	High_confidence	6	6	9	0.204280	2.750000	chr1	19093526	19093673	LINE|L2|L2	+	chr1	19092732	19093440	UBR4|ENST00000492606.1	-	19092732,19093312	19092918,19093440	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	33021446	33021455	33021454	-	RAMPAGE_only	9	11	18	0.408560	3.419382	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.944444
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	222599955	222600009	222600008	-	RAMPAGE_only	4	4	20	0.453956	4.037401	chr2	222599989	222600062	LINE|RTE-BovB|MamRTE1	-	chr2	222570535	222656337	FARSB|ENST00000281828.6	-	222570535,222599927,222613810,222619644,222623649,222624271,222624713,222628836,222630112,222631603,222633198,222634390,222639579,222640861,222642850,222648739,222656015	222572022,222600083,222613928,222619737,222623730,222624479,222624775,222628888,222630174,222631674,222633307,222634541,222639695,222640931,222643005,222648795,222656337	0.850000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	140697952	140697994	140697952	+	High_confidence	3	3	11	0.249676	2.913977	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140698679	140704502	ZMAT2|ENST00000519913.6	+	140698679,140700818,140702005,140703917,140704425	140698831,140700912,140702129,140703991,140704502	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	134527024	134527073	134527024	+	High_confidence	8	9	54	1.225681	4.601838	chr9	134526943	134527053	LINE|L2|L2b	-	chr9	134527181	134545244	AL669970.3|ENST00000435284.2	+	134527181,134544919	134527284,134545244	0.907407
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	241372946	241372965	241372949	+	RAMPAGE_only	92	92	268	6.083011	5.942886	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241356296	241466030	FARP2|ENST00000373287.8	+	241356296,241373083,241403827,241404798,241407536,241411032,241413306,241417961,241431678,241434157,241434961,241436480,241441303,241456746,241462522,241463334,241463898,241465459	241356388,241373290,241403932,241404841,241407615,241411130,241413421,241418109,241431774,241434321,241435030,241436538,241441556,241456922,241462612,241463468,241463980,241466030	0.932836
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	38485273	38485318	38485307	-	RAMPAGE_only	3	4	19	0.431258	3.266333	chr5	38485069	38485288	DNA|hAT-Charlie|MER20	-	chr5	38474962	38502675	MSTRG.19386.1	-	38474962,38482588,38484774,38489077,38490189,38493605,38496381,38499512,38502636	38482218,38482667,38485980,38489245,38490291,38493785,38496534,38499583,38502675	0.947368
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	89486607	89486627	89486616	-	RAMPAGE_only	2	3	11	0.249676	2.846439	chr14	89486513	89486649	SINE|5S-Deu-L2|AmnSINE1	-	chr14	89161384	89417112	FOXN3|ENST00000557258.5	-	89161384,89180700,89280949,89350671,89411933,89416870	89162969,89180806,89281014,89350808,89412490,89417112	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	8436023	8436026	8436023	-	RAMPAGE_only	6	8	12	0.272374	3.084963	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.583333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	95860352	95860388	95860387	-	RAMPAGE_only	2	2	7	0.158885	2.807355	chr2	95860155	95860490	LINE|L2|L2c	-	chr2	95856007	95907499	ANKRD36C|ENST00000531153.5	-	95856007,95857308,95859860,95867439,95876438,95880426,95880594,95882301,95882468,95884172,95884339,95886047,95886215,95887924,95888091,95889798,95889965,95891664,95891831,95893532,95893695,95894212,95895398,95895561,95902885,95903052,95904760,95904923,95905440,95906630,95906793	95856180,95857492,95860074,95867581,95876509,95880499,95880623,95882374,95882497,95884245,95884368,95886120,95886244,95887997,95888120,95889871,95889994,95891737,95891860,95893605,95893724,95894275,95895471,95895590,95902958,95903081,95904833,95904952,95905503,95906703,95907499	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	65437264	65438782	65437584	+	RAMPAGE_only	93	94	3201	72.655670	7.744033	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.999063
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	59148429	59148442	59148441	+	High_confidence	5	5	11	0.249676	2.921928	chr11	59148443	59148662	SINE|MIR|MIRb	+	chr11	59148244	59155036	FAM111A|ENST00000531147.1	+	59148244,59151749	59148953,59155036	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	32397470	32397471	32397470	-	RAMPAGE_only	12	12	15	0.340467	2.973557	chr5	32397457	32397754	SINE|Alu|AluSx3	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	128921939	128921961	128921960	+	High_confidence	7	7	19	0.431258	3.892407	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.842105
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	147831939	147831949	147831948	-	High_confidence	6	6	18	0.408560	3.734522	chr5	147831826	147831957	SINE|MIR|MIR3	+	chr5	147824567	147831786	SPINK1|ENST00000296695.9	-	147824567,147828021,147829598,147831522	147824706,147828128,147829630,147831786	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	96285489	96285553	96285489	-	RAMPAGE_only	3	3	18	0.408560	4.058814	chr15	96285441	96285601	LINE|RTE-BovB|MamRTE1	+	chr15	96285067	96289265	AC016251.1|ENST00000624299.1	-	96285067	96289265	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	155478035	155478066	155478061	-	RAMPAGE_only	4	4	19	0.431258	3.503258	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.631579
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	39320326	39320361	39320360	-	High_confidence	3	3	10	0.226978	2.921928	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	111097312	111097352	111097351	-	High_confidence	10	10	101	2.292478	4.618472	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.990099
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	62600168	62600196	62600186	-	High_confidence	5	5	16	0.363165	3.773557	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	50756576	50756623	50756576	-	RAMPAGE_only	3	3	17	0.385863	3.625000	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.882353
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	31703836	31703873	31703843	-	High_confidence	3	4	19	0.431258	3.932138	chr1	31703656	31703803	SINE|MIR|MIR3	-	chr1	31698489	31704060	COL16A1|ENST00000532877.1	-	31698489,31699812,31700040,31703836	31698606,31699930,31700115,31704060	0.842105
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	95967330	95967362	95967361	+	RAMPAGE_only	8	8	13	0.295071	3.334679	chr9	95967328	95967398	SINE|MIR|MIR3	-	chr9	95922401	96004855	ERCC6L2|ENST00000479391.6	+	95922401,95923259,95928150,95928718,95941453,95954727,95955913,95966561,95967458,95970575,95971932,95978060,96004519	95922418,95923379,95928277,95928864,95941549,95954922,95956013,95966714,95967625,95970656,95973088,95978215,96004855	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	129439763	129439791	129439763	-	High_confidence	3	3	8	0.181582	2.500000	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129437046	129439937	MBD4|ENST00000505883.1	-	129437046,129437807,129439729	129437308,129437950,129439937	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	244859941	244859991	244859951	-	High_confidence	13	13	37	0.839819	3.168216	chr1	244859899	244860018	SINE|Alu|FLAM_C	+	chr1	244854189	244860018	HNRNPU|ENST00000468690.2	-	244854189,244856727,244858728	244856625,244858274,244860018	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	46313995	46314008	46314007	+	RAMPAGE_only	11	11	18	0.408560	3.734522	chr19	46313961	46314229	LINE|L1|L1ME1	-	chr19	46302363	46321918	MSTRG.12871.12	+	46302363,46302613,46303897,46305244,46308220,46308662,46309150,46312160,46312505,46321775	46302428,46303687,46304088,46305390,46308305,46308775,46309359,46312267,46320561,46321918	0.944444
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	89888015	89888047	89888037	+	RAMPAGE_only	10	10	32	0.726330	3.531520	chr10	89888002	89888814	LTR|ERV1|LTR8B	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.781250
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	28661313	28661327	28661326	+	RAMPAGE_only	3	3	8	0.181582	2.500000	chr11	28661030	28661355	LTR|ERVL|LTR33	-	chr11	28702614	29044871	AC090833.1|ENST00000513853.5	+	28702614,28741824,29037741,29044444	28702834,28741908,29037816,29044871	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	74138866	74138904	74138898	-	RAMPAGE_only	2	2	12	0.272374	2.913977	chr10	74138649	74138959	SINE|Alu|AluJo	+	chr10	74120256	74150791	AP3M1|NM_001320264.1	-	74120256,74124379,74126147,74129107,74129906,74134026,74136631,74138106,74150334	74123910,74124524,74126355,74129241,74129992,74134164,74136803,74138382,74150791	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	1210114	1210133	1210114	+	High_confidence	2	2	7	0.158885	2.807355	chr4	1210160	1210359	LINE|L2|L2	+	chr4	1210119	1218591	CTBP1-AS|NR_104331.1	+	1210119,1210889,1212033,1212674,1215545,1215958	1210558,1210956,1212539,1212770,1215690,1218591	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	19344364	19344410	19344373	-	RAMPAGE_only	7	8	45	1.021401	4.908194	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	74000232	74000255	74000254	+	RAMPAGE_only	5	5	10	0.226978	2.921928	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	147172975	147172997	147172975	+	High_confidence	7	11	24	0.544747	4.088779	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.958333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	139364647	139364720	139364647	+	RAMPAGE_only	6	7	36	0.817121	4.530493	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	42284223	42284241	42284238	+	RAMPAGE_only	4	5	14	0.317769	3.182006	chr2	42284226	42284378	LINE|L1|L1ME4c	+	chr2	42282908	42289913	EML4|ENST00000480320.1	+	42282908,42284633,42286268,42288226	42282972,42284703,42286379,42289913	0.928571
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	106278141	106278146	106278141	+	High_confidence	6	7	11	0.249676	3.121928	chr9	106277947	106278267	LINE|RTE-X|L4_C_Mam	+	chr9	106278391	106604795	LINC01505|ENST00000435485.5	+	106278391,106279100,106499486,106500356,106558471,106588376,106603755	106278472,106279190,106499612,106500505,106558583,106588464,106604795	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	57813874	57813887	57813874	+	High_confidence	3	3	12	0.272374	3.418296	chr11	57813330	57813992	DNA|hAT-Charlie|Charlie1	+	chr11	57813916	57815481	CTNND1|ENST00000525821.1	+	57813916,57815393	57814373,57815481	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	113185028	113185066	113185065	+	High_confidence	4	4	9	0.204280	2.947703	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	31119035	31119048	31119035	-	High_confidence	4	4	8	0.181582	2.521641	chr12	31118893	31119042	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	16040739	16040757	16040742	-	High_confidence	3	4	9	0.204280	2.725481	chr17	16040648	16040699	SINE|Alu|AluJb	-	chr17	16032432	16040659	NCOR1|ENST00000582565.1	-	16032432,16034764,16039432,16040440	16032483,16034944,16039654,16040659	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	141332616	141332617	141332616	-	High_confidence	584	586	617	14.004545	4.669286	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.956240
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	138095146	138095202	138095170	-	RAMPAGE_only	4	4	22	0.499352	3.921928	chr3	138095060	138095271	SINE|MIR|MIR	+	chr3	138092351	138103778	DZIP1L|ENST00000490472.1	-	138092351,138094861,138097762,138103470	138092544,138094983,138097847,138103778	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	96299214	96299275	96299249	-	RAMPAGE_only	3	4	14	0.317769	3.182006	chr12	96299190	96299368	DNA|TcMar|DNA1_Mam	-	chr12	96289257	96303125	CDK17|ENST00000553042.1	-	96289257,96294998,96297269,96297626,96298868,96300303,96303040	96289287,96295122,96297332,96297721,96298983,96300360,96303125	0.642857
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	11795569	11795579	11795578	+	High_confidence	59	59	107	2.428665	4.259189	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.953271
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	95664812	95664817	95664816	+	High_confidence	5	6	10	0.226978	2.921928	chr14	95664736	95664975	LTR|ERVL-MaLR|MLT1H	-	chr14	95664861	95670414	TCL6|ENST00000486671.1	+	95664861,95668125	95665076,95670414	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	101308299	101308325	101308316	+	High_confidence	8	10	40	0.907912	4.971928	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	55352836	55352841	55352836	+	RAMPAGE_only	3	3	8	0.181582	2.750000	chr14	55352765	55352941	DNA|TcMar-Mariner|MARNA	+	chr14	55271302	55353609	FBXO34|ENST00000313833.4	+	55271302,55350380	55271537,55353609	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	28225820	28225837	28225820	+	RAMPAGE_only	3	3	8	0.181582	2.807355	chr12	28225761	28225932	LTR|ERVL-MaLR|MLT1L	+	chr12	28221162	28550165	MSTRG.5380.12	+	28221162,28255580,28257201,28259363,28305648,28306741,28307644,28362437,28391303,28450160,28450349,28452477,28484051,28549062	28225861,28255662,28257245,28259442,28305806,28306945,28307749,28362515,28391411,28450253,28450418,28452654,28484165,28550165	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	2838260	2838262	2838260	+	RAMPAGE_only	3	5	7	0.158885	2.807355	chr4	2838108	2838543	LINE|L1|L1ME3B	-	chr4	2843856	2930076	ADD1|NM_176801.2	+	2843856,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763,2907742,2908514,2914883,2926013,2926641,2928170	2844024,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905108,2907844,2908604,2915040,2926112,2926675,2930076	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	106985290	106985291	106985290	-	High_confidence	6	6	9	0.204280	2.500000	chr12	106985200	106985407	LINE|L2|L2c	+	chr12	106978455	106985286	MTERF2|ENST00000550736.1	-	106978455,106980620,106985114	106978771,106980713,106985286	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	27612576	27612577	27612576	+	High_confidence	11	11	16	0.363165	3.452820	chr14	27612284	27612881	LTR|ERVL|LTR66	+	chr14	27612587	27639636	LINC00645|ENST00000557359.5	+	27612587,27613420,27634243,27636419	27612677,27613496,27634344,27639636	0.937500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	158173024	158173025	158173024	-	High_confidence	410	426	518	11.757462	6.524498	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.928571
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	181954484	181954513	181954484	+	High_confidence	5	5	24	0.544747	3.740953	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.791667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	56785867	56785868	56785867	-	High_confidence	6	6	7	0.158885	2.584963	chr6	56779724	56785868	LINE|L1|L1PA3	-	chr6	56670674	56785879	DST|ENST00000522538.5	-	56670674,56699652,56701887,56704279,56735227,56785770	56670807,56699745,56701965,56704369,56735289,56785879	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	55982724	55982800	55982799	-	High_confidence	15	15	48	1.089495	4.922750	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.854167
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	103129595	103129629	103129616	+	High_confidence	2	2	8	0.181582	3.000000	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	73590670	73590682	73590674	-	RAMPAGE_only	10	11	24	0.544747	4.186704	chr4	73590575	73590742	LTR|ERVL|LTR86A2	+	chr4	73574570	73620412	RASSF6|ENST00000395777.6	-	73574570,73576409,73576612,73581816,73585179,73587839,73593450,73598639,73611730,73620287	73576310,73576507,73576731,73581868,73585364,73587934,73593593,73598718,73611829,73620412	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	43013345	43013393	43013392	-	High_confidence	10	10	22	0.499352	4.221928	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.863636
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	212697250	212697251	212697250	-	RAMPAGE_only	5	6	7	0.158885	2.521641	chr1	212697248	212697403	SINE|MIR|MIRb	-	chr1	212686417	212698755	BATF3|ENST00000478275.1	-	212686417,212696960	212686979,212698755	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	19647778	19647785	19647784	-	RAMPAGE_only	5	5	10	0.226978	3.321928	chrX	19647773	19647939	DNA|hAT-Charlie|MER5A	+	chrX	19592067	19664715	SH3KBP1|ENST00000477102.1	-	19592067,19594948,19601499,19607937,19631863,19645399,19664688	19592147,19595000,19601650,19608045,19631958,19645475,19664715	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	82859967	82859995	82859967	-	RAMPAGE_only	1	1	7	0.158885	2.584963	chr11	82859762	82859921	LINE|L1|L1M5	-	chr11	82824367	82900430	PRCP|ENST00000393399.6	-	82824367,82838386,82839260,82849048,82849913,82850323,82853176,82859976,82884822,82900234	82825122,82838574,82839425,82849218,82850071,82850505,82853278,82860117,82884885,82900430	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	53614536	53614553	53614536	-	RAMPAGE_only	2	2	8	0.181582	2.807355	chrX	53614388	53614509	SINE|MIR|MIR3	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	7147287	7147288	7147287	+	High_confidence	114	114	162	3.677044	5.900592	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.827160
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	79973436	79973448	79973447	-	RAMPAGE_only	3	3	9	0.204280	2.641604	chr4	79973432	79973728	SINE|Alu|AluSz	-	chr4	79906761	80072563	MSTRG.18559.4	-	79906761,79964664,79972937,79978006,79983877,79984818,80008520,80018897,80031622,80033471,80035971,80054271,80055149,80055359,80055931,80069435,80071582,80072408	79907467,79966892,79977701,79978174,79983970,79984863,80008616,80018976,80031692,80033570,80036032,80054352,80055218,80055467,80056013,80069507,80071654,80072563	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	71979120	71979137	71979136	+	RAMPAGE_only	3	4	7	0.158885	2.584963	chr10	71979150	71979318	SINE|MIR|MIRb	+	chr10	71964364	72013564	CHST3|ENST00000373115.4	+	71964364,72005735,72007171	71964694,72005982,72013564	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	24423164	24423283	24423184	+	High_confidence	41	41	293	6.650457	6.182024	chr14	24422287	24423820	LINE|L2|L2b	-	chr14	24423144	24438408	MSTRG.7094.1	+	24423144,24430713,24431462,24432721,24436071,24436387,24437035	24423476,24430931,24432610,24433032,24436179,24436489,24438408	0.938567
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	97241159	97241170	97241169	+	RAMPAGE_only	7	8	14	0.317769	3.334679	chr2	97241018	97241180	LINE|L2|L2c	+	chr2	97212726	97249050	ANKRD36|ENST00000421946.2	+	97212726,97213541,97215300,97215424,97217176,97217299,97219049,97219173,97224808,97233729,97241265,97243845,97245156,97247475	97213447,97213614,97215329,97215497,97217205,97217372,97219078,97219246,97224879,97233871,97241479,97244029,97246071,97249050	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	212239006	212239007	212239006	-	High_confidence	6	7	7	0.158885	2.584963	chr1	212238941	212239019	LINE|L2|L2a	-	chr1	212225279	212238977	AL451060.1|ENST00000431307.1	-	212225279,212230202,212238906	212225513,212230259,212238977	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	113117907	113117971	113117970	+	High_confidence	99	126	601	13.641380	6.420898	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.841930
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	72627719	72627766	72627765	-	High_confidence	4	4	20	0.453956	3.932138	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72523331	72627686	LINC01572|ENST00000563823.6	-	72523331,72540577,72555264,72561972,72570450,72617182,72627534	72523415,72540611,72555326,72562086,72570515,72617234,72627686	0.550000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	27662237	27662258	27662257	-	RAMPAGE_only	3	3	9	0.204280	2.750000	chr2	27662206	27662384	LINE|L2|L2c	-	chr2	27653069	27663639	SUPT7L|ENST00000464789.2	-	27653069,27655364,27657344,27660983,27663514	27653747,27655602,27657669,27662281,27663639	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	129256112	129256146	129256129	+	RAMPAGE_only	2	2	10	0.226978	2.947703	chr3	129256170	129256401	DNA|hAT|MamRep38	+	chr3	129249631	129277771	COPG1|ENST00000515725.5	+	129249631,129250681,129252280,129252622,129254667,129254984,129256067,129257469,129257726,129260332,129260618,129263903,129265548,129267023,129267936,129268494,129268931,129271766,129272243,129272806,129274837,129275193,129277293	129249746,129250734,129252361,129252955,129254743,129255077,129256154,129257627,129257860,129260400,129260807,129263999,129265792,129267099,129268040,129268620,129269000,129271909,129272415,129272904,129274976,129275292,129277771	0.600000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	44912624	44912638	44912628	-	High_confidence	7	8	16	0.363165	3.875000	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.687500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	17026158	17026179	17026178	+	RAMPAGE_only	7	7	23	0.522049	3.638148	chrX	17026085	17026321	SINE|MIR|MIRc	+	chrX	16947069	17153272	MSTRG.25369.3	+	16947069,17006220,17022122,17025061,17029525,17047346,17052381,17054807,17062437,17068401,17069939,17103717,17133823,17135260,17138855,17147412	16947134,17006344,17022271,17025185,17029623,17047482,17052445,17054950,17062532,17068471,17069993,17103779,17133907,17135406,17138961,17153272	0.782609
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	38694426	38694472	38694426	+	RAMPAGE_only	4	4	22	0.499352	3.594466	chr4	38694475	38694562	LINE|L2|L2-3_Crp	+	chr4	38664196	38701042	MSTRG.18292.3	+	38664196,38680586,38688584,38694473	38664461,38680682,38689879,38701042	0.954545
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	35713413	35713482	35713481	-	High_confidence	10	13	54	1.225681	4.303695	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.962963
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	41632117	41632141	41632127	-	High_confidence	5	5	21	0.476654	4.201841	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41521197	41632075	KC6|ENST00000600183.5	-	41521197,41525354,41631999	41521496,41525526,41632075	0.523810
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	98017769	98017790	98017773	-	High_confidence	169	172	659	14.957853	7.291169	chr15	98016264	98017842	LINE|L2|L2a	+	chr15	97961124	98017782	MSTRG.8914.1	-	97961124,98016428	97997823,98017782	0.946889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	75347039	75347066	75347042	+	High_confidence	12	14	35	0.794423	4.764858	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.771429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	92536601	92536602	92536601	-	High_confidence	41	44	44	0.998703	4.656213	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	2608244	2608253	2608246	+	High_confidence	5	12	27	0.612841	4.134336	chr12	2608211	2608425	SINE|MIR|MIRc	-	chr12	2607879	2610699	CACNA1C|ENST00000496818.2	+	2607879,2608510,2610540	2608063,2608712,2610699	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	88635643	88635655	88635654	+	High_confidence	30	30	54	1.225681	5.097299	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.796296
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	84086745	84086760	84086745	+	RAMPAGE_only	8	8	22	0.499352	3.658993	chr13	84085604	84086932	LTR|ERV1|LTR12C	-	chr13	84140601	84606768	LINC00333|NR_046871.1	+	84140601,84238539,84242062,84562363,84562608,84562791,84606705	84140643,84238600,84242097,84562463,84562676,84563234,84606768	0.545455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	102346555	102346587	102346555	-	High_confidence	2	2	7	0.158885	2.584963	chr8	102346474	102346770	SINE|Alu|AluSx	+	chr8	102254197	102347000	MSTRG.23985.4	-	102254197,102257631,102258984,102261145,102261914,102264473,102265099,102266946,102268977,102270038,102271133,102272528,102275520,102275707,102276971,102278825,102279035,102280393,102281288,102285126,102285512,102286359,102287432,102288154,102289452,102293604,102293954,102294981,102295203,102295413,102295635,102296892,102297457,102298391,102298847,102299451,102299999,102305084,102311298,102311734,102312133,102312341,102313803,102314743,102323310,102326545,102327741,102329089,102329282,102342472,102345395,102346235,102346902	102254514,102257717,102259129,102261259,102262070,102264558,102265275,102267007,102269108,102270183,102271245,102272772,102275619,102275828,102277192,102278939,102279208,102280467,102281519,102285338,102285781,102286617,102287564,102288266,102289576,102293844,102294115,102295111,102295330,102295532,102295782,102296984,102297606,102298489,102298971,102299547,102304169,102305295,102311496,102311889,102312245,102312485,102313916,102314853,102323495,102326663,102327896,102329200,102329399,102342684,102345545,102346395,102347000	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	123630182	123630191	123630182	-	RAMPAGE_only	3	6	10	0.226978	2.725481	chr12	123629883	123630152	SINE|MIR|MIR	-	chr12	123625966	123633766	EIF2B1|ENST00000537073.1	-	123625966,123630168,123630396,123632344,123633544	123627156,123630285,123630533,123632446,123633766	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	100829513	100830098	100829513	+	High_confidence	22	22	783	17.772380	6.813306	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.951469
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	168160250	168160270	168160269	+	RAMPAGE_only	3	4	14	0.317769	3.180833	chr4	168160046	168161887	LINE|L1|L1PA11	-	chr4	168165183	168187690	ANXA10|ENST00000507278.5	+	168165183,168177739,168177889,168179216,168181682,168184558,168187365	168165326,168177793,168177983,168179312,168181741,168184681,168187690	0.642857
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	61647007	61647039	61647019	-	High_confidence	5	5	17	0.385863	4.087463	chr8	61646951	61647212	LINE|L2|L2a	+	chr8	61626140	61646872	ASPH|ENST00000519678.5	-	61626140,61633682,61637946,61642887,61643385,61643944,61644599,61646749	61626280,61633727,61638003,61642920,61643433,61644001,61644632,61646872	0.705882
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	101819735	101819743	101819735	+	RAMPAGE_only	3	3	7	0.158885	2.521641	chr14	101819651	101819923	SINE|Alu|AluJb	-	chr14	101761861	101821098	PPP2R5C|ENST00000556068.5	+	101761861,101762904,101786017,101818026	101761920,101762970,101786183,101821098	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	227142956	227142988	227142956	-	RAMPAGE_only	31	31	60	1.361868	5.293577	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.700000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	127543805	127543810	127543805	-	RAMPAGE_only	36	38	70	1.588846	5.291647	chr9	127543678	127543822	LINE|L2|L2c	+	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	39277035	39277058	39277035	+	High_confidence	2	2	9	0.204280	2.725481	chr4	39277076	39277148	LINE|CR1|L3	+	chr4	39276963	39285808	WDR19|ENST00000503733.1	+	39276963,39278130,39278538,39285486	39277158,39278207,39278663,39285808	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	29647360	29647361	29647360	+	High_confidence	5	5	8	0.181582	3.000000	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	4143196	4143215	4143199	+	High_confidence	75	76	187	4.244489	6.125746	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.989305
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	28277082	28277113	28277082	+	RAMPAGE_only	2	2	9	0.204280	3.000000	chr13	28276957	28277123	DNA|hAT-Charlie|MER5A	+	chr13	28139032	28295335	PAN3|ENST00000399613.1	+	28139032,28174271,28176492,28177864,28220230,28256291,28260446,28261400,28266714,28267094,28267299,28270700,28271980,28277236,28280411,28281314,28287983,28292381	28139087,28174393,28176559,28177935,28220378,28256539,28260551,28261458,28266876,28267211,28267401,28270866,28272071,28277376,28280541,28281379,28288122,28295335	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	74969666	74969755	74969714	+	RAMPAGE_only	11	11	51	1.157588	4.824988	chr10	74969693	74969726	LINE|L2|L2a	-	chr10	74842619	75022125	KAT6B|ENST00000648369.1	+	74842619,74959969,74969659,74970019,74972506,74975398,74977315,74979223,74981786,74985079,75020581,75021125,75021880	74843478,74960078,74969775,74970101,74972639,74976330,74977437,74979339,74981928,74985241,75020813,75021285,75022125	0.921569
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	49539151	49539163	49539151	+	RAMPAGE_only	2	2	8	0.181582	2.807355	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49542601	49543633	RCN3|ENST00000593483.1	+	49542601,49543105	49542668,49543633	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	28114926	28114940	28114926	-	RAMPAGE_only	5	5	12	0.272374	3.459432	chr21	28114721	28115202	LTR|ERVL|MLT2A2	-	chr21	28104354	28228480	MSTRG.15734.1	-	28104354,28163601,28212239,28217177,28225883,28228361	28119874,28163717,28212351,28217347,28225991,28228480	0.583333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	71383124	71383147	71383146	+	RAMPAGE_only	3	3	11	0.249676	3.277613	chrX	71383170	71383464	LINE|L1|L1MC5a	+	chrX	71366304	71464046	TAF1|ENST00000276072.7	+	71366304,71367498,71368053,71375166,71376949,71377602,71378234,71378823,71381742,71382535,71382760,71382990,71383961,71384944,71387260,71388236,71388737,71389584,71392568,71392874,71393300,71394066,71397252,71398571,71401527,71406637,71407573,71407973,71421308,71423116,71423973,71424153,71454169,71454740,71458240,71459551,71460625,71463823	71366494,71367613,71368170,71375286,71377191,71377821,71378453,71379031,71381919,71382663,71382868,71383164,71384135,71385049,71387461,71388378,71388868,71389665,71392718,71392994,71393476,71394245,71397466,71398737,71401739,71406746,71407672,71408151,71421376,71423239,71424066,71424238,71454237,71454857,71458366,71459708,71460803,71464046	0.727273
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	10532170	10532200	10532180	-	RAMPAGE_only	3	3	14	0.317769	3.180833	chr16	10532094	10532204	DNA|hAT-Charlie|MER5A	-	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.928571
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	182942559	182942570	182942559	-	High_confidence	2	3	9	0.204280	3.000000	chr2	182942484	182942617	LINE|CR1|L3	+	chr2	182930724	182942119	NCKAP1|ENST00000471640.1	-	182930724,182934751,182935264,182942069	182930788,182934832,182935375,182942119	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	151766780	151766781	151766780	+	RAMPAGE_only	20	25	25	0.567445	4.133661	chr3	151766184	151766973	LINE|L1|L1MC3	-	chr3	151770455	151784894	AADACP1|NR_026915.1	+	151770455,151775694,151783831	151770611,151775764,151784894	0.760000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	9993951	9993968	9993966	-	High_confidence	2	4	8	0.181582	2.521641	chr11	9993915	9994007	DNA|hAT-Ac|OldhAT1	+	chr11	9853706	9993104	SBF2|ENST00000420722.2	-	9853706,9856457,9858225,9895942,9961956,9963772,9968340,9989496,9992989	9853712,9856720,9858396,9896011,9962106,9963882,9968545,9989595,9993104	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	42638402	42638422	42638402	+	RAMPAGE_only	3	3	7	0.158885	2.584963	chr15	42638423	42638526	SINE|Alu|AluSz6	+	chr15	42629841	42670050	STARD9|ENST00000568493.1	+	42629841,42634855,42637906,42638025,42638699,42651015,42652519,42661157,42662793,42663280,42669157	42630146,42634972,42637939,42638087,42638812,42651085,42652592,42661225,42662891,42663917,42670050	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	33931470	33931497	33931474	+	High_confidence	3	3	13	0.295071	3.418296	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931213	33971186	LINC00649|ENST00000400353.6	+	33931213,33945809,33969236	33931267,33945895,33971186	0.538462
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	192986888	192986931	192986930	-	RAMPAGE_only	4	4	28	0.635539	3.979098	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192935795	192957713	AL390957.1|ENST00000647436.1	-	192935795,192957303	192935903,192957713	0.642857
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	202582335	202582366	202582335	+	RAMPAGE_only	3	3	15	0.340467	3.378783	chr1	202581884	202582432	LINE|CR1|L3	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.933333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	97697123	97697146	97697145	-	High_confidence	2	2	7	0.158885	2.584963	chr9	97696883	97697140	LINE|L1|L1M4b	-	chr9	97674908	97697293	XPA|ENST00000462523.5	-	97674908,97682199,97684922,97687095,97689533,97693648,97697120	97675587,97682430,97685040,97687261,97689639,97693759,97697293	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	68133142	68133183	68133161	+	RAMPAGE_only	4	5	18	0.408560	3.683542	chr15	68132898	68133209	LINE|L1|L1MC4a	-	chr15	68121281	68149605	MSTRG.8567.6	+	68121281,68136589,68142289,68146565	68133664,68142030,68145906,68149605	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	110884916	110884934	110884916	+	High_confidence	2	2	8	0.181582	2.807355	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110884770	110894179	PDCD4|ENST00000481353.5	+	110884770,110887664,110889532,110890555,110894090	110885366,110887886,110889630,110890670,110894179	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	20685266	20685307	20685306	-	High_confidence	2	2	8	0.181582	3.000000	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	133370016	133370020	133370016	-	RAMPAGE_only	6	8	15	0.340467	3.521641	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.933333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	65285119	65285132	65285131	+	RAMPAGE_only	42	46	83	1.883918	5.867447	chr14	65284944	65285417	LTR|ERVL-MaLR|MLT1C	+	chr14	65410591	65744121	FUT8|ENST00000360689.9	+	65410591,65455620,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65411993,65455718,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65744121	0.686747
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	57861350	57861405	57861404	+	High_confidence	3	3	28	0.635539	3.721413	chr19	57861335	57861627	SINE|Alu|AluJb	-	chr19	57861284	57862158	ZNF587|ENST00000596433.1	+	57861284,57861793	57861473,57862158	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	47369308	47369311	47369310	+	High_confidence	22	29	33	0.749028	3.778502	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369147	47387028	EPCAM|NM_002354.2	+	47369147,47373462,47373807,47375233,47377013,47378952,47379768,47385165,47386571	47369581,47373570,47374048,47375299,47377077,47379054,47379969,47385210,47387028	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	2594091	2594103	2594095	-	High_confidence	5	5	13	0.295071	3.418296	chr1	2593981	2594096	SINE|MIR|MIRb	-	chr1	2592654	2594073	MMEL1|ENST00000469962.1	-	2592654,2592832,2593813	2592720,2592966,2594073	0.769231
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	108300299	108300343	108300299	+	RAMPAGE_only	1	1	12	0.272374	2.550341	chr2	108300096	108300386	SINE|Alu|AluSc	+	chr2	108298972	108308713	SULT1C2|ENST00000495441.1	+	108298972,108305171,108305414,108308351	108304700,108305266,108305595,108308713	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	3083275	3083306	3083275	+	RAMPAGE_only	5	6	22	0.499352	3.913977	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	83806317	83806324	83806323	-	RAMPAGE_only	5	5	9	0.204280	2.947703	chr9	83806166	83806294	LINE|L2|L2c	-	chr9	83739424	83817632	GKAP1|ENST00000376365.7	-	83739424,83741951,83742529,83748308,83753257,83780381,83784714,83788600,83799184,83806301,83816995,83817516	83739744,83742029,83742600,83748372,83753359,83780404,83784838,83788678,83799328,83806560,83817127,83817632	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	139344535	139344548	139344547	+	High_confidence	77	78	198	4.494165	5.432036	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.924242
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	41430558	41430586	41430585	+	RAMPAGE_only	15	15	28	0.635539	4.161978	chr21	41429929	41430715	DNA|hAT-Charlie|Charlie2b	+	chr21	41431713	41459214	MX1|ENST00000288383.10	+	41431713,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41432175,41435960,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	0.892857
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	223547788	223548130	223547851	-	RAMPAGE_only	17	18	226	5.129704	5.824839	chr1	223547765	223547919	LINE|RTE-BovB|MamRTE1	+	chr1	223541647	223654399	MSTRG.2296.11	-	223541647,223543107,223544066,223544771,223550959,223553831,223558130,223609152,223612245,223615969,223619292,223622814,223625804,223626988,223628008,223628661,223654329	223541859,223543166,223544183,223549382,223551017,223553900,223558167,223609364,223612257,223616145,223620266,223622900,223625888,223627157,223628142,223628780,223654399	0.995575
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	64773463	64773479	64773463	-	RAMPAGE_only	1	2	7	0.158885	2.584963	chr11	64773369	64773442	LINE|RTE-BovB|MamRTE1	-	chr11	64773022	64778504	SF1|ENST00000482693.1	-	64773022,64776497,64778361	64773505,64776626,64778504	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	27286215	27286234	27286227	+	High_confidence	2	3	8	0.181582	2.750000	chr16	27285896	27286308	LTR|ERVL-MaLR|MLT1G	-	chr16	27286656	27290492	FLJ21408|ENST00000566535.1	+	27286656,27290244	27286744,27290492	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	22909560	22909561	22909560	-	RAMPAGE_only	5	5	8	0.181582	3.000000	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22906027	22919110	RBM23|ENST00000554955.5	-	22906027,22908332,22909482,22911327,22918998	22906368,22908380,22909595,22911403,22919110	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	102822458	102822461	102822458	-	RAMPAGE_only	13	14	25	0.567445	4.168296	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.680000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	102235451	102235481	102235480	-	High_confidence	10	12	35	0.794423	4.043058	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.942857
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	149425559	149425999	149425684	+	RAMPAGE_only	64	68	848	19.247738	6.275652	chr5	149425592	149425831	DNA|hAT-Charlie|MER113	-	chr5	149406878	149428678	CARMN|ENST00000602964.1	+	149406878,149420480	149407078,149428678	0.998821
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	109383446	109383509	109383497	-	High_confidence	10	10	85	1.929313	5.498990	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.894118
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	69248812	69248880	69248812	-	High_confidence	3	3	20	0.453956	3.892407	chr17	69248697	69249025	SINE|Alu|AluJb	-	chr17	69247375	69249141	ABCA5|ENST00000586601.1	-	69247375,69248261	69247644,69249141	0.950000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	50754752	50754774	50754773	-	RAMPAGE_only	5	6	13	0.295071	3.251629	chr14	50754738	50754803	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	147937528	147937596	147937542	+	RAMPAGE_only	6	6	35	0.794423	4.373796	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.628571
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	50756903	50756989	50756942	-	RAMPAGE_only	7	8	34	0.771725	4.314973	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.970588
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	11351617	11351637	11351636	-	RAMPAGE_only	7	7	20	0.453956	3.892407	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.700000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	237546077	237546107	237546077	+	High_confidence	3	3	14	0.317769	3.546594	chr2	237545882	237546379	LTR|ERV1|MER4A	-	chr2	237546404	237553843	MLPH|ENST00000477457.1	+	237546404,237549220,237552336,237553565	237546683,237549278,237552437,237553843	0.785714
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	17197834	17197857	17197856	+	High_confidence	4	4	9	0.204280	2.947703	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	40650117	40650152	40650151	+	High_confidence	5	5	16	0.363165	3.773557	chr15	40650091	40650181	LINE|L2|L2c	+	chr15	40650126	40654977	KNL1|ENST00000532347.1	+	40650126,40650543,40651470,40652004,40654908	40650378,40650583,40651572,40652105,40654977	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	997305	997328	997318	-	High_confidence	4	5	20	0.453956	4.037401	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrY	12686572	12686590	12686572	+	RAMPAGE_only	4	5	9	0.204280	2.947703	chrY	12685409	12686624	LTR|ERV1|MER4-int	+	chrY	12701230	12860839	USP9Y|ENST00000338981.7	+	12701230,12708633,12709387,12720588,12722107,12725112,12726574,12735611,12735997,12736410,12738156,12739524,12757191,12758505,12760483,12771067,12773582,12775470,12776648,12778018,12778605,12779525,12786202,12786521,12790406,12791498,12793031,12810178,12810671,12811634,12812829,12816123,12818419,12833687,12837910,12839863,12841009,12842239,12843063,12846332,12846932,12847238,12856339,12856632,12857565,12859278	12702055,12708693,12709543,12720737,12722187,12725225,12726793,12735727,12736249,12736549,12738309,12739629,12757398,12758642,12760617,12771155,12773925,12775566,12776860,12778259,12778755,12779646,12786333,12786800,12790532,12791624,12793201,12810287,12810818,12811781,12813052,12816344,12818610,12833861,12838052,12840614,12841133,12842465,12843193,12846518,12847153,12847327,12856496,12856845,12857661,12860839	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	13577898	13577920	13577919	-	High_confidence	5	7	9	0.204280	2.725481	chr4	13577906	13578204	SINE|Alu|AluSx1	-	chr4	13569785	13578201	BOD1L1|ENST00000505343.1	-	13569785,13576837,13577402,13577581	13570128,13576991,13577487,13578201	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	68773389	68773415	68773414	-	RAMPAGE_only	4	4	8	0.181582	3.000000	chr11	68773373	68773449	LINE|CR1|L3	+	chr11	68757612	68815503	CPT1A|ENST00000539743.5	-	68757612,68759568,68760224,68761534,68762626,68773264,68775315,68780639,68781770,68784814,68793314,68794803,68796855,68799217,68803999,68807466,68812436,68815333	68757730,68759661,68760338,68761687,68762761,68773429,68775432,68780745,68781959,68785010,68793402,68794911,68796933,68799355,68804101,68807638,68812576,68815503	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	33931146	33931157	33931146	+	High_confidence	11	11	35	0.794423	3.600432	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.971429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	12043056	12043070	12043069	+	RAMPAGE_only	4	6	10	0.226978	2.721928	chr16	12043111	12043170	SINE|MIR|MIR	+	chr16	12038709	12051868	SNX29|ENST00000568359.1	+	12038709,12042896,12046383,12048371,12051846	12038787,12043077,12046454,12048620,12051868	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	106561950	106561951	106561950	-	High_confidence	58	58	59	1.339170	5.418157	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.762712
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	202565118	202565291	202565232	+	RAMPAGE_only	21	22	198	4.494165	5.291179	chr2	202565124	202565329	LINE|CR1|L3b	-	chr2	202377433	202567751	BMPR2|ENST00000374574.2	+	202377433,202464808,202467518,202513718,202514887,202518821,202520086,202530793,202532584,202542310,202552715,202559695	202377550,202464979,202467689,202513829,202514979,202519052,202520201,202530954,202532732,202542447,202552888,202567751	0.984848
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	108224068	108224075	108224074	+	High_confidence	42	42	65	1.475357	4.993650	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	31178190	31178421	31178373	-	RAMPAGE_only	12	14	159	3.608951	6.072499	chr6	31178332	31178586	LTR|ERVL|LTR102_Mam	-	chr6	31164600	31186457	MSTRG.20866.8	-	31164600,31165127,31165570,31165926,31177351	31164867,31165286,31165701,31176688,31186457	0.993711
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	128631677	128631707	128631677	+	RAMPAGE_only	7	7	15	0.340467	3.664498	chr7	128631488	128631793	SINE|Alu|AluJo	-	chr7	128574750	128653243	MSTRG.22907.3	+	128574750,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294,128629393,128631679,128638773,128642216,128648791,128651037,128651188	128574791,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626530,128629458,128631869,128641379,128642281,128648982,128651095,128653243	0.866667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	110885060	110885061	110885060	+	High_confidence	6	7	8	0.181582	2.807355	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110885252	110898122	PDCD4|ENST00000462577.5	+	110885252,110887664,110890599,110894090,110894411,110895947,110898027	110885366,110887814,110890670,110894198,110894522,110896087,110898122	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	55267587	55267612	55267611	-	High_confidence	2	3	7	0.158885	2.584963	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	27558503	27558504	27558503	-	High_confidence	6	6	9	0.204280	3.000000	chr1	27558497	27558557	SINE|MIR|MIR3	+	chr1	27551667	27558361	AHDC1|ENST00000487743.3	-	27551667,27552038,27552891,27553073,27558304	27551850,27552189,27552929,27553185,27558361	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	98943307	98943309	98943307	+	High_confidence	6	10	10	0.226978	2.921928	chr9	98943193	98943308	LINE|L2|L2a	-	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	77657083	77657103	77657102	-	RAMPAGE_only	5	5	15	0.340467	3.039149	chrX	77657054	77657294	LINE|L1|L1MEf	+	chrX	77634421	77682141	MSTRG.25730.16	-	77634421,77635914,77652113,77654097,77656559,77663381,77664644,77681519	77634703,77636056,77652353,77654200,77656653,77663558,77676298,77682141	0.733333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	52543532	52543592	52543591	-	RAMPAGE_only	4	5	20	0.453956	4.037401	chr14	52543581	52543672	LINE|L2|L2a	+	chr14	52430589	52552506	TXNDC16|ENST00000281741.8	-	52430589,52439203,52440563,52455323,52457089,52470036,52470511,52482229,52482821,52488362,52490390,52490838,52511239,52514879,52519171,52536718,52537598,52542370,52543397,52544263,52552315	52432587,52439394,52440724,52455462,52457174,52470173,52470680,52482289,52482965,52488486,52490451,52491005,52511390,52514970,52519293,52536793,52537672,52542453,52543630,52544371,52552506	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	244560	244594	244593	-	RAMPAGE_only	3	3	14	0.317769	3.378783	chr18	243923	245900	LINE|L1|L1MEi	-	chr18	214520	245734	THOC1|ENST00000583228.5	-	214520,215428,216485,218885,223439,224083,224923,225088,226800,244301	214921,215504,216633,218969,223505,224179,224994,225403,226901,245734	0.785714
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	179856091	179856098	179856096	-	RAMPAGE_only	2	4	8	0.181582	2.521641	chr1	179855896	179856189	SINE|Alu|AluSz	+	chr1	179839966	179877799	TOR1AIP2|ENST00000367612.7	-	179839966,179847534,179850844,179852631,179877238,179877692	179846828,179847636,179851363,179852811,179877373,179877799	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	210020744	210020874	210020744	+	RAMPAGE_only	6	6	50	1.134890	4.665132	chr2	210020725	210020879	SINE|MIR|MIRc	-	chr2	210002627	210021576	RPE|ENST00000429921.5	+	210002627,210003437,210015972,210016203,210016506,210017472,210019668	210002783,210003468,210016112,210016257,210016641,210017559,210021576	0.960000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	1655395	1655410	1655409	-	RAMPAGE_only	9	10	27	0.612841	4.563856	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.592593
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	91179053	91179089	91179053	-	High_confidence	2	2	9	0.204280	2.947703	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91143276	91178646	DCN|NM_133506.3	-	91143276,91164604,91178341	91146252,91164717,91178646	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	111914055	111914081	111914078	+	RAMPAGE_only	4	4	11	0.249676	3.121928	chr3	111914076	111914676	LINE|L1|L1ME3G	-	chr3	111859759	111917663	PHLDB2|ENST00000477695.5	+	111859759,111884063,111913318	111859878,111885412,111917663	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	176162915	176162963	176162936	-	RAMPAGE_only	9	9	25	0.567445	4.323856	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	176043215	176147120	MSTRG.1957.11	-	176043215,176043709,176046180,176081151,176085775,176116623,176133846,176135009,176136487,176144004	176043267,176043818,176046324,176081287,176085890,176116681,176133900,176135086,176136547,176147120	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	47780088	47780108	47780107	+	High_confidence	8	10	13	0.295071	2.653544	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	34659787	34659882	34659881	+	RAMPAGE_only	18	19	89	2.020105	4.434496	chr11	34659791	34660003	DNA|hAT-Charlie|MER20	-	chr11	34632463	34663288	EHF|NM_001206616.1	+	34632463,34642627,34646438,34649018,34651541,34651736,34656907,34658532,34658831	34632652,34642727,34646684,34649081,34651610,34651805,34656970,34658728,34663288	0.977528
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	41186202	41186203	41186202	-	RAMPAGE_only	6	6	9	0.204280	3.000000	chr1	41186124	41186319	SINE|MIR|MIR1_Amn	+	chr1	41027199	41161481	SCMH1|ENST00000361705.7	-	41027199,41028583,41037361,41046406,41048689,41070594,41075218,41113282,41116921,41142877,41159724,41160874,41161363	41028319,41028726,41037541,41046598,41048890,41070721,41075451,41113526,41117010,41143112,41159933,41160898,41161481	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	2589093	2589125	2589120	+	RAMPAGE_only	3	4	14	0.317769	3.026987	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	0.928571
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	75127193	75127272	75127193	-	RAMPAGE_only	11	11	76	1.725033	4.775383	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.934211
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	10564937	10564938	10564937	-	RAMPAGE_only	4	4	6	0.136187	2.584963	chr19	10564755	10564893	SINE|MIR|MIRb	-	chr19	10553575	10565971	KRI1|ENST00000478863.5	-	10553575,10555086,10555284,10557551,10557971,10558163,10559358,10559612,10559809,10560311,10561002,10561168,10561666,10561790,10562728,10564928,10565716,10565905	10554281,10555185,10555349,10557895,10558060,10558239,10559529,10559708,10559936,10560448,10561080,10561265,10561716,10561845,10562837,10565034,10565790,10565971	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	8701808	8701824	8701808	+	RAMPAGE_only	6	9	17	0.385863	3.499228	chr18	8701808	8702158	LTR|ERVL|LTR33A	-	chr18	8705660	8828946	MTCL1|ENST00000306329.15	+	8705660,8718423,8720337,8777832,8783529,8785935,8796231,8798096,8806892,8812978,8818962,8821466,8824698,8828907	8706713,8718648,8720496,8777892,8784843,8786091,8796462,8798291,8807060,8813233,8819259,8821498,8826232,8828946	0.882353
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	9333276	9333289	9333276	+	RAMPAGE_only	25	25	47	1.066797	4.958520	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9307799	9480816	PLCB4|NM_000933.3	+	9307799,9337125,9338007,9338893,9362895,9365460,9371213,9372302,9373046,9380053,9384200,9387462,9389878,9390530,9393587,9395522,9401489,9407916,9408632,9409056,9411036,9419806,9421296,9423747,9435559,9437001,9443980,9444177,9453346,9457413,9459634,9468570,9472789,9473278,9476716,9478920	9307898,9337206,9338067,9339037,9362975,9365514,9371295,9372403,9373104,9380162,9384411,9387556,9389958,9390615,9393678,9395618,9401590,9408058,9408717,9409181,9411088,9419909,9421461,9423952,9435648,9437152,9444030,9444243,9453462,9457489,9459810,9468672,9472847,9473365,9476753,9480816	0.553191
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	8310227	8310241	8310240	+	High_confidence	5	6	14	0.317769	3.546594	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.928571
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	200889279	200889318	200889293	-	High_confidence	38	38	177	4.017511	6.464467	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.638418
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	58578102	58578138	58578132	-	High_confidence	35	44	196	4.448770	6.439082	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.596939
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	46374808	46374833	46374832	-	RAMPAGE_only	12	14	21	0.476654	4.021928	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46342963	46387235	RUBCNL|ENST00000441284.5	-	46342963,46344740,46345446,46349285,46350112,46356431,46359485,46361440,46362537,46363114,46368037,46368732,46371940,46377889,46387133	46343497,46344831,46345600,46349347,46350351,46356496,46359631,46361573,46362598,46363213,46368249,46368815,46372597,46378005,46387235	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	59619894	59619923	59619894	+	High_confidence	1559	1731	5119	116.190057	5.746036	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.962297
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	110897712	110897838	110897791	-	RAMPAGE_only	16	16	173	3.926720	4.251450	chr13	110897412	110897924	LINE|L1|L1MA5	-	chr13	110894638	110910394	MSTRG.6961.10	-	110894638,110907305	110907067,110910394	0.994220
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	218560831	218560848	218560831	-	RAMPAGE_only	2	2	6	0.136187	2.584963	chr2	218560567	218560864	DNA|hAT-Charlie|MER102a	-	chr2	218454814	218568291	USP37|ENST00000418019.5	-	218454814,218455579,218457091,218459789,218463305,218466009,218474629,218476839,218479649,218482069,218485663,218488303,218495759,218497733,218498025,218509978,218529955,218534608,218546220,218546918,218549808,218553552,218558497,218560819,218562717,218568177	218455017,218455718,218457161,218459905,218463366,218466176,218474885,218476981,218479715,218482234,218485743,218488421,218495950,218497857,218498157,218510140,218530040,218534706,218546298,218547091,218549909,218553724,218558677,218560883,218562813,218568291	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	48492662	48492679	48492662	-	High_confidence	2	2	6	0.136187	2.584963	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	188153195	188153225	188153224	+	High_confidence	4	4	13	0.295071	3.584963	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.538462
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	108451038	108451104	108451086	+	RAMPAGE_only	10	10	58	1.316473	5.336176	chr2	108451073	108451151	LINE|RTE-BovB|MamRTE1	-	chr2	108449883	108472899	GCC2|ENST00000409896.1	+	108449883,108451027,108452398,108468979,108469650,108472826	108449994,108451112,108452466,108469084,108472116,108472899	0.758621
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	207340393	207340405	207340393	+	RAMPAGE_only	3	3	7	0.158885	2.584963	chr1	207340353	207340666	SINE|Alu|AluJr	-	chr1	207321531	207340766	CD55|ENST00000367063.6	+	207321531,207322381,207324558,207325621,207326751,207331107,207336692,207337328,207339396,207340390	207321865,207322567,207324750,207325721,207326837,207331296,207336818,207337409,207339417,207340766	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	33931396	33931415	33931396	+	High_confidence	1	1	11	0.249676	3.459432	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.545455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	118492129	118492130	118492129	-	RAMPAGE_only	6	6	8	0.181582	2.750000	chr6	118491930	118492179	SINE|MIR|MIRb	+	chr6	118460771	118651857	CEP85L|NM_001042475.2	-	118460771,118469071,118470536,118479870,118480395,118481778,118483705,118491685,118511297,118523801,118565528,118632452,118651196	118465568,118469303,118470644,118479921,118480513,118481933,118483858,118491865,118511415,118523920,118566316,118632611,118651857	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	121313981	121314021	121314002	+	RAMPAGE_only	71	73	343	7.785347	5.654067	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.982507
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	185922547	185922569	185922568	-	High_confidence	3	3	10	0.226978	3.169925	chr3	185922388	185922657	DNA|hAT-Charlie|MER58B	+	chr3	185917327	185922107	TRA2B|ENST00000414862.5	-	185917327,185918364,185919436,185921103,185922010	185917725,185918435,185919496,185921187,185922107	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	7566514	7566538	7566514	-	High_confidence	40	46	254	5.765242	6.621226	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.625984
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	34957957	34957966	34957965	+	RAMPAGE_only	4	5	10	0.226978	3.121928	chr5	34957948	34958128	SINE|MIR|MIR3	-	chr5	34929592	34958964	DNAJC21|NM_001012339.2	+	34929592,34933814,34935709,34936143,34937325,34938857,34941095,34944866,34945760,34950169,34953925,34954552	34929916,34933908,34935833,34936266,34937630,34939009,34941183,34945025,34945803,34950342,34954001,34958964	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	7137085	7137106	7137085	+	RAMPAGE_only	2	2	10	0.226978	2.921928	chr12	7137127	7137213	SINE|MIR|MIR1_Amn	+	chr12	7138681	7143198	CLSTN3|ENST00000544584.1	+	7138681,7141241,7142085,7142868,7143162	7138816,7141404,7142139,7143026,7143198	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	15782831	15782848	15782840	-	High_confidence	3	3	14	0.317769	3.546594	chr16	15782761	15782860	DNA|hAT-Tip100|MER91C	+	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.928571
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	195688701	195688725	195688701	+	High_confidence	2	2	10	0.226978	3.321928	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688681	195708807	MUC20-OT1|ENST00000627562.2	+	195688681,195689338,195699029,195701379,195708133	195688797,195689438,195699207,195701495,195708807	0.600000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	82081601	82081607	82081606	-	RAMPAGE_only	6	6	15	0.340467	3.640224	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	0.933333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	45652685	45652708	45652685	+	RAMPAGE_only	2	2	8	0.181582	3.000000	chr14	45652504	45652950	LTR|ERVL|MLT2A1	+	chr14	46064158	46501903	LINC00871|NR_102701.1	+	46064158,46210823,46211746,46438180,46449907,46501306	46064216,46210939,46211804,46438250,46449954,46501903	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	74000381	74000414	74000381	+	RAMPAGE_only	1	1	9	0.204280	3.000000	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	3782625	3782661	3782660	-	RAMPAGE_only	3	3	11	0.249676	2.921928	chr3	3782417	3783018	LTR|ERVL|MLT2A2	-	chr3	3700813	3800875	SUMF1|ENST00000470751.5	-	3700813,3777724,3779240,3782502,3788913,3800700	3702461,3777803,3779322,3782701,3789074,3800875	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	92244902	92244914	92244902	-	High_confidence	3	3	7	0.158885	2.584963	chr7	92244870	92245026	DNA|hAT-Charlie|MER20B	+	chr7	92240848	92244149	KRIT1|ENST00000470309.5	-	92240848,92242033,92244001	92241152,92242161,92244149	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	177970300	177970320	177970300	-	High_confidence	3	3	8	0.181582	3.000000	chr1	177970262	177970423	SINE|MIR|MIRb	+	chr1	177945331	177970213	SEC16B|ENST00000464631.6	-	177945331,177947824,177951913,177954278,177958131,177958839,177960341,177960790,177961589,177964170,177965046,177965892,177967682,177970189	177946531,177947942,177951995,177954376,177958362,177958975,177960403,177960942,177961734,177964279,177965167,177966005,177968039,177970213	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	235865241	235865255	235865241	-	RAMPAGE_only	3	4	10	0.226978	2.947703	chr1	235864944	235865509	LINE|L2|L2a	+	chr1	235829408	235866876	LYST|ENST00000468626.2	-	235829408,235833577,235866842	235830424,235833667,235866876	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	158863388	158863410	158863388	+	RAMPAGE_only	3	4	9	0.204280	3.169925	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	142130624	142130629	142130624	+	RAMPAGE_only	7	8	13	0.295071	3.085055	chr7	142130468	142130781	LINE|L2|L2c	+	chr7	142111753	142222324	MGAM2|ENST00000477922.3	+	142111753,142116873,142120301,142130947,142131517,142131930,142133980,142136540,142137432,142138541,142140801,142141020,142143768,142144860,142147455,142154017,142154728,142157936,142158247,142159286,142160133,142161124,142161954,142164855,142166097,142167267,142170074,142171271,142172097,142172651,142173228,142175651,142183265,142185076,142185988,142187749,142189366,142196153,142196564,142196699,142197399,142197643,142198138,142198614,142199879,142208572,142218360,142219869	142111807,142116979,142120381,142131071,142131627,142132085,142134152,142136640,142137545,142138667,142140933,142141119,142143882,142144945,142147573,142154189,142154845,142158091,142158332,142159343,142160258,142161213,142162004,142165023,142166253,142167486,142170229,142171440,142172194,142172764,142173354,142175780,142183373,142185139,142186123,142187834,142189505,142196287,142196599,142196816,142197548,142197728,142198195,142198739,142199968,142208622,142218531,142222324	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	125484689	125484705	125484689	-	RAMPAGE_only	5	5	11	0.249676	3.321928	chr9	125484657	125484735	LINE|CR1|Plat_L3	+	chr9	125438812	125506366	MAPKAP1|ENST00000496063.1	-	125438812,125444500,125467971,125471082,125478079,125484442,125506309	125439012,125444598,125468109,125471237,125478182,125484583,125506366	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	95831779	95831823	95831822	-	RAMPAGE_only	6	6	36	0.817121	4.572469	chr9	95831563	95831844	LTR|ERVL|LTR16D	+	chr9	95806087	95875977	LINC00476|NR_023390.1	-	95806087,95850226,95875864	95813922,95850292,95875977	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	80176110	80176132	80176131	-	RAMPAGE_only	4	5	13	0.295071	3.188722	chr10	80176083	80176485	LINE|L1|L1ME4b	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	0.846154
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	157513690	157513728	157513727	-	RAMPAGE_only	6	6	15	0.340467	3.456565	chr5	157513609	157513745	LINE|L2|L2c	+	chr5	157481226	157575741	ADAM19|ENST00000517905.1	-	157481226,157488264,157489101,157490309,157491614,157491834,157492972,157494686,157496893,157499572,157502802,157505668,157507055,157509300,157513433,157518822,157519838,157530806,157537912,157564372,157570894,157575602	157481943,157488489,157489186,157490454,157491723,157491912,157493177,157494795,157497089,157499662,157502980,157505808,157507140,157509467,157513505,157518888,157520031,157530883,157537991,157564443,157570980,157575741	0.866667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	174410313	174410341	174410340	+	High_confidence	3	3	14	0.317769	3.392747	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.785714
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	233691673	233691710	233691673	+	RAMPAGE_only	35	35	93	2.110896	6.092817	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233682367	233692347	UGT1A7|ENST00000485022.1	+	233682367,233689898,233690519	233682792,233689904,233692347	0.634409
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	80147915	80147930	80147920	+	High_confidence	5	7	16	0.363165	3.500000	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80147923	80178432	PARD6G-AS1|NR_028340.1	+	80147923,80175879,80178085	80148254,80175935,80178432	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	39026130	39026140	39026135	+	High_confidence	4	4	14	0.317769	3.238901	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.928571
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	41004227	41004253	41004227	-	RAMPAGE_only	9	10	27	0.612841	2.972879	chr13	41004048	41004286	LINE|L2|L2c	-	chr13	40987456	41016900	MSTRG.6614.1	-	40987456,41003533	41003395,41016900	0.925926
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	164839323	164839351	164839323	+	RAMPAGE_only	22	22	66	1.498055	5.585839	chr2	164839310	164839440	SINE|Alu|AluJr	+	chr2	164840671	165094117	AC019197.1|ENST00000638199.1	+	164840671,164848841,164945583,164949934,164959254,164960898,165091119,165091829	164840822,164849402,164945671,164950133,164959329,164960967,165091299,165094117	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	60887070	60887084	60887070	+	High_confidence	5	5	20	0.453956	4.121928	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	50737390	50737419	50737390	+	RAMPAGE_only	2	2	8	0.181582	2.750000	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50740266	50744808	LUC7L3|ENST00000507503.1	+	50740266,50741101,50741656,50743705,50744651	50740345,50741246,50741731,50743810,50744808	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	32641950	32641961	32641960	-	High_confidence	3	3	8	0.181582	2.521641	chr21	32641733	32641912	SINE|MIR|MIR3	-	chr21	32631777	32641945	SYNJ1|ENST00000418301.3	-	32631777,32634860,32638907,32639670,32641895	32631801,32634881,32639125,32639779,32641945	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	48379638	48379639	48379638	+	RAMPAGE_only	6	6	9	0.204280	3.000000	chr13	48379680	48379983	SINE|Alu|AluSc	+	chr13	48444827	48456307	RB1|ENST00000480491.1	+	48444827,48452992,48456203	48445221,48453111,48456307	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	102397443	102397770	102397769	-	RAMPAGE_only	29	29	297	6.741248	6.469433	chr11	102397661	102397799	DNA|hAT-Charlie|Charlie16a	-	chr11	102396331	102452839	TMEM123|ENST00000361236.7	-	102396331,102401538,102401915,102452523	102398891,102401692,102402206,102452839	0.989899
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	16203425	16203426	16203425	-	RAMPAGE_only	16	16	19	0.431258	3.787144	chr17	16203099	16203668	LINE|L2|L2a	+	chr17	16030093	16194639	NCOR1|NM_001190440.1	-	16030093,16034764,16039432,16040440,16046950,16048844,16057513,16057906,16058470,16061757,16062104,16064067,16064869,16065484,16067893,16070164,16071408,16072144,16073428,16075533,16079963,16080407,16080606,16086281,16091862,16098366,16101249,16108785,16117887,16119422,16121051,16126081,16137310,16138157,16139007,16143605,16146375,16149450,16151945,16153338,16158759,16164978,16171802,16186553,16194461	16032483,16034944,16039654,16040494,16047093,16048988,16057737,16058064,16058599,16061894,16062270,16064187,16065019,16065694,16068121,16070525,16071665,16072228,16073569,16075702,16080064,16080509,16080727,16086442,16092058,16098496,16101805,16108912,16118027,16119485,16121269,16126206,16137412,16138212,16139186,16143696,16146548,16149517,16151998,16153395,16158873,16165161,16171995,16186687,16194639	0.894737
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	61108432	61108448	61108432	+	RAMPAGE_only	2	2	8	0.181582	2.750000	chr1	61106758	61108657	LINE|L1|L1ME3F	-	chr1	61107063	61183880	MSTRG.958.13	+	61107063,61127132,61139150	61126727,61138515,61183880	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	52906769	52906943	52906942	+	RAMPAGE_only	8	12	102	2.315176	5.225952	chr5	52906842	52907236	LTR|ERVL?|LTR87	+	chr5	52864970	52956491	MSTRG.19464.11	+	52864970,52865689,52881872,52887814,52893674,52897454,52898238,52905762,52910161,52915463,52918731,52920331,52922776,52925277,52927583,52929624,52932046,52937400,52939589,52939839,52944942,52947344,52952406	52865082,52865817,52882021,52887965,52893840,52897528,52898383,52909041,52910419,52915594,52918898,52920472,52922887,52925487,52927664,52929701,52933996,52937514,52939691,52939944,52945035,52947461,52956491	0.980392
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	73859945	73860003	73860002	+	RAMPAGE_only	4	4	19	0.431258	3.471354	chr11	73860044	73860326	LINE|L2|L2c	+	chr11	73842112	73864599	MRPL48|ENST00000314282.7	+	73842112,73844806,73859906,73863171,73864295	73843367,73844976,73860009,73863261,73864599	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	46269580	46269610	46269606	-	High_confidence	13	19	49	1.112192	5.150324	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	169182813	169182839	169182832	-	High_confidence	7	8	23	0.522049	3.849224	chr6	169182607	169182961	LTR|ERVL-MaLR|THE1A	-	chr6	169175303	169182740	LINC02544|ENST00000564830.2	-	169175303,169179275,169182683	169175671,169179394,169182740	0.739130
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	93324812	93324830	93324812	-	High_confidence	2	2	7	0.158885	2.521641	chr1	93324761	93324840	LINE|CR1|L3b	-	chr1	93264646	93324691	CCDC18-AS1|ENST00000415150.5	-	93264646,93305387,93315148,93318167,93324634	93264772,93305470,93315269,93318228,93324691	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	3536827	3536868	3536845	-	High_confidence	9	9	44	0.998703	5.095795	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.681818
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	45397310	45397334	45397310	-	High_confidence	7	7	16	0.363165	3.189898	chr15	45397083	45398013	LTR|ERVL|MER21C	+	chr15	45380499	45397346	GATM|ENST00000527933.2	-	45380499,45396166,45396921	45380559,45396253,45397346	0.812500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	33931221	33931235	33931224	+	High_confidence	3	4	9	0.204280	3.169925	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	74230145	74230181	74230176	-	RAMPAGE_only	3	3	17	0.385863	3.750000	chrX	74228865	74230951	LINE|L1|L1MB7	+	chrX	74226279	74293472	MSTRG.25683.13	-	74226279,74244042,74276618,74280930,74281701,74293351	74243396,74275989,74280494,74281085,74281848,74293472	0.941176
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	132789854	132789856	132789855	-	RAMPAGE_only	88	95	132	2.996110	4.682994	chr9	132789646	132790007	LTR|ERVL-MaLR|MLT1E2	-	chr9	132725582	132727598	AK8|ENST00000467161.1	-	132725582,132727453	132725925,132727598	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	171224402	171224403	171224402	-	High_confidence	7	7	8	0.181582	2.807355	chr1	171224222	171224819	LTR|ERV1|LTR10C	+	chr1	171199243	171224284	AL021026.1|ENST00000422841.5	-	171199243,171203890,171223996	171199515,171203988,171224284	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	229232040	229232054	229232053	-	High_confidence	41	42	85	1.929313	5.686854	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.705882
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	92939366	92939368	92939367	+	RAMPAGE_only	5	7	9	0.204280	2.750000	chr15	92939359	92939489	DNA|hAT-Charlie|MER5A	+	chr15	92924277	92997069	CHD2|ENST00000637572.1	+	92924277,92927243,92929029,92937517,92939577,92941821,92942842,92944414,92945820,92946037,92948951,92953356,92955422,92956458,92967324,92971764,92972264,92974878,92978233,92979134,92980814,92981364,92984329,92985497,92991475,92992858,92996956	92924552,92927330,92929091,92937625,92939718,92941955,92943068,92944515,92945865,92946216,92949076,92954336,92955512,92956649,92967513,92971927,92972417,92974950,92978383,92979283,92980911,92981457,92984500,92985673,92991517,92992998,92997069	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	46274422	46274429	46274422	-	High_confidence	9	9	29	0.658236	4.000646	chr11	46274366	46274400	SINE|MIR|MIR1_Amn	-	chr11	46256354	46274547	LINC02489|ENST00000527239.1	-	46256354,46274380	46256541,46274547	0.620690
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	174894645	174894716	174894715	+	RAMPAGE_only	8	8	35	0.794423	4.511865	chr3	174894624	174897831	LINE|L1|L1MA1	+	chr3	174882838	175097142	MSTRG.17800.12	+	174882838,175096789	174911495,175097142	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	108165465	108165477	108165465	-	RAMPAGE_only	4	4	12	0.272374	3.277613	chr3	108165378	108165542	DNA|hAT-Ac|OldhAT1	+	chr3	108160811	108222570	IFT57|NM_018010.3	-	108160811,108163662,108165430,108166853,108167792,108191520,108206627,108213930,108218534,108219409,108222110	108162655,108163729,108165493,108166985,108167864,108191643,108206696,108214021,108218653,108219572,108222570	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	24580622	24580623	24580622	+	High_confidence	12	12	14	0.317769	3.182006	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	99411260	99411289	99411288	-	High_confidence	6	7	11	0.249676	2.845351	chr6	99411279	99411437	SINE|MIR|MIRc	-	chr6	99408152	99410992	PNISR|ENST00000463021.1	-	99408152,99409172	99408271,99410992	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	2759957	2760018	2760017	+	High_confidence	4	5	27	0.612841	3.653544	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	0.962963
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	68736206	68736211	68736210	-	RAMPAGE_only	9	9	17	0.385863	3.750000	chr4	68735466	68736444	LTR|ERV1|MER61-int	-	chr4	68704599	68712498	AC147055.1|ENST00000509261.1	-	68704599,68708647,68710039,68712312	68704874,68708855,68710120,68712498	0.647059
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	55516318	55516319	55516318	+	RAMPAGE_only	6	6	6	0.136187	2.584963	chr12	55515725	55517184	LINE|L1|L1M1	+	chr12	56158160	56161574	MYL6|ENST00000550697.5	+	56158160,56158683,56159586,56159974,56160242,56160625,56161386	56158404,56158711,56159730,56160148,56160320,56160670,56161574	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	96436658	96436666	96436665	+	RAMPAGE_only	4	7	14	0.317769	3.521641	chr12	96436185	96436703	LTR|ERVL-MaLR|MLT1L	-	chr12	96489570	96875555	CFAP54|NM_001306084.1	+	96489570,96500833,96503885,96506927,96512985,96518927,96521856,96522087,96527245,96533791,96534061,96535514,96538383,96540836,96547901,96554181,96554675,96564467,96564643,96576584,96580596,96580919,96589426,96592489,96594290,96598644,96621589,96623766,96625717,96626812,96630092,96630550,96644177,96647874,96649890,96651587,96657881,96658210,96663829,96679599,96684647,96685028,96688915,96691127,96693721,96699970,96704742,96708607,96718442,96720404,96739955,96742438,96743401,96743730,96744019,96753742,96756457,96757494,96764150,96765076,96784716,96786674,96792328,96811735,96817774,96829013,96860818,96875117	96489926,96500939,96504029,96507099,96513044,96519071,96521970,96522189,96527444,96533973,96534227,96535600,96538518,96540987,96547978,96554310,96554802,96564554,96564765,96576761,96580689,96581105,96589563,96592637,96594446,96598767,96621721,96623881,96625807,96626939,96630204,96630651,96644408,96648017,96650072,96651815,96658105,96658346,96663932,96679752,96684735,96685238,96688982,96691310,96693808,96700093,96704796,96708803,96718522,96720565,96740061,96742586,96743559,96743910,96744146,96753898,96756563,96757588,96764249,96765218,96784890,96786898,96792499,96811842,96817913,96829088,96860952,96875555	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	112178683	112178734	112178721	-	High_confidence	7	8	30	0.680934	4.211261	chr6	112178427	112178704	LINE|L1|L1PB1	-	chr6	112171629	112179502	LAMA4|ENST00000521187.1	-	112171629,112175312,112178120	112172804,112175480,112179502	0.966667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	116239250	116239251	116239250	-	RAMPAGE_only	12	12	18	0.408560	3.852169	chr7	116238900	116239327	LTR|ERVL-MaLR|MLT1E2	-	chr7	116238003	116327896	AC073130.2|ENST00000444244.1	-	116238003,116239014,116243841,116255117,116327831	116238332,116239249,116243936,116255235,116327896	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	118143019	118143020	118143019	-	RAMPAGE_only	8	8	10	0.226978	2.921928	chr2	118137000	118143020	LINE|L1|L1PA2	-	chr2	118132127	118186386	THORLNC|ENST00000414886.5	-	118132127,118176764,118183086,118186230	118132372,118176905,118183322,118186386	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	71546887	71546888	71546887	+	High_confidence	9	11	11	0.249676	3.277613	chr15	71546806	71547005	SINE|MIR|MIR3	-	chr15	71547201	71783383	THSD4|NM_001286429.1	+	71547201,71660529,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71771063,71777231	71547481,71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71771208,71783383	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	227534916	227534933	227534916	+	RAMPAGE_only	9	9	29	0.658236	4.080050	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.862069
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	159976684	159976847	159976846	+	RAMPAGE_only	12	14	91	2.065500	4.187508	chr1	159976818	159976895	SINE|Alu|FLAM_A	+	chr1	159961223	159979061	LINC01133|ENST00000423943.1	+	159961223,159976643,159978599	159961405,159977112,159979061	0.769231
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	68834436	68834469	68834444	+	RAMPAGE_only	3	4	17	0.385863	3.750000	chr16	68834273	68834516	SINE|Alu|AluJr	-	chr16	68737308	68835534	CDH1|ENST00000621016.4	+	68737308,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68819279,68822000,68834202	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68819425,68822154,68835534	0.941176
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	32479863	32479883	32479863	+	High_confidence	2	2	10	0.226978	2.921928	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.700000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	75133201	75133505	75133263	-	RAMPAGE_only	39	40	325	7.376786	6.561265	chr14	75133229	75134244	LINE|L1|L1ME1	+	chr14	75131469	75176631	TMED10|ENST00000303575.8	-	75131469,75135759,75147663,75152031,75176354	75135006,75135886,75147737,75152143,75176631	0.993846
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	79631104	79631329	79631302	+	High_confidence	1229	1232	5046	114.533118	7.068087	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.980579
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	79355220	79355228	79355220	-	RAMPAGE_only	3	4	7	0.158885	2.521641	chr13	79354957	79355171	SINE|MIR|MIR	-	chr13	79319953	79405788	RBM26|ENST00000267229.11	-	79319953,79322348,79334343,79337101,79341122,79342663,79344247,79344668,79354438,79355219,79358273,79359574,79365577,79366054,79366632,79368729,79370944,79371841,79377378,79378788,79405703	79320710,79322462,79334430,79337302,79341227,79342831,79344322,79344794,79354561,79355384,79358433,79359686,79365718,79366195,79366872,79368990,79371162,79371930,79377515,79378907,79405788	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	29193399	29193422	29193399	+	High_confidence	12	13	22	0.499352	3.970573	chr21	29193019	29193674	LTR|ERV1|MER50B	+	chr21	29193493	29288205	LINC00189|NR_027072.2	+	29193493,29287983	29194260,29288205	0.954545
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	241235121	241235214	241235121	-	RAMPAGE_only	6	7	76	1.725033	5.711320	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241230774	241236664	HDLBP|ENST00000470482.5	-	241230774,241233819,241235120,241235489,241236614	241230944,241233963,241235275,241235594,241236664	0.631579
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	110046413	110046459	110046413	+	RAMPAGE_only	2	2	10	0.226978	3.121928	chrX	110046353	110046415	DNA|TcMar-Tigger|Tigger19b	-	chrX	110065100	110171511	TMEM164|ENST00000461715.1	+	110065100,110067346,110109079,110144797,110171419	110065523,110067396,110109146,110144876,110171511	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	128427986	128428006	128428005	+	High_confidence	13	13	32	0.726330	4.456565	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.781250
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	128622482	128622518	128622497	+	RAMPAGE_only	6	7	24	0.544747	4.277613	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128653243	MSTRG.22907.3	+	128574750,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294,128629393,128631679,128638773,128642216,128648791,128651037,128651188	128574791,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626530,128629458,128631869,128641379,128642281,128648982,128651095,128653243	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	27306482	27306489	27306488	+	RAMPAGE_only	4	6	10	0.226978	2.503258	chr17	27306202	27306514	SINE|Alu|AluSz	-	chr17	27302434	27308207	WSB1|ENST00000487603.5	+	27302434,27304779,27306781,27307743	27303635,27304911,27306882,27308207	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	48546068	48546084	48546068	-	High_confidence	2	3	6	0.136187	2.584963	chr4	48546053	48546089	LINE|CR1|X7C_LINE	-	chr4	48521093	48546759	FRYL|ENST00000513401.5	-	48521093,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066	48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546759	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	84554074	84554075	84554074	-	High_confidence	10	11	11	0.249676	3.121928	chr16	84553795	84554203	LTR|ERVL|LTR67B	-	chr16	84489362	84554033	TLDC1|ENST00000565079.5	-	84489362,84495682,84497933,84553945	84489422,84495913,84498111,84554033	0.545455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	166850210	166850268	166850210	+	RAMPAGE_only	2	3	23	0.522049	4.095795	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.956522
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	11587465	11587469	11587465	-	High_confidence	4	4	11	0.249676	2.732159	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	111413972	111414053	111413972	-	RAMPAGE_only	7	7	45	1.021401	5.002964	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	111411164	111451513	MSTRG.22818.1	-	111411164	111451513	0.622222
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	32594790	32594791	32594790	+	High_confidence	4	4	7	0.158885	2.807355	chr5	32594609	32594886	DNA|hAT-Charlie|MER1B	+	chr5	32594922	32601130	SUB1|ENST00000502453.1	+	32594922,32601004	32599069,32601130	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	179528379	179528391	179528390	+	RAMPAGE_only	3	3	7	0.158885	2.807355	chr1	179528412	179528446	LINE|CR1|L3	+	chr1	179534492	179554713	AXDND1|ENST00000484455.1	+	179534492,179554511	179534962,179554713	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	23705433	23705444	23705433	-	RAMPAGE_only	3	3	10	0.226978	2.725481	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	23709192	23709193	23709192	-	RAMPAGE_only	7	7	8	0.181582	2.521641	chr16	23709150	23709323	SINE|Alu|FRAM	+	chr16	23706219	23706854	ERN2|ENST00000566565.1	-	23706219,23706753	23706431,23706854	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	50271485	50271488	50271485	+	High_confidence	70	70	142	3.223088	5.269548	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	46256866	46256872	46256866	-	High_confidence	2	2	7	0.158885	2.584963	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	8776302	8776323	8776316	-	High_confidence	2	2	8	0.181582	2.807355	chr11	8776195	8776350	LINE|L2|L2c	+	chr11	8730980	8776679	ST5|ENST00000533016.1	-	8730980,8750620,8776191	8731209,8750725,8776679	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	15771933	15771954	15771953	-	RAMPAGE_only	3	3	8	0.181582	2.807355	chr16	15771884	15772032	DNA|hAT-Tip100|MER91A	+	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	153967486	153967517	153967486	+	High_confidence	4	4	11	0.249676	2.845351	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	58116873	58116892	58116873	-	RAMPAGE_only	7	7	12	0.272374	3.418296	chr16	58116567	58116831	SINE|MIR|MIR	-	chr16	58113959	58115567	CFAP20|ENST00000564150.1	-	58113959,58114809,58115268	58114030,58114920,58115567	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	134947192	134947221	134947220	+	RAMPAGE_only	4	5	14	0.317769	3.392747	chr7	134946986	134947284	LINE|L1|L1MB2	-	chr7	134941181	134948102	CALD1|ENST00000472096.1	+	134941181,134947507	134941237,134948102	0.642857
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	189782426	189782443	189782426	-	High_confidence	4	4	16	0.363165	3.750000	chr2	189782212	189782378	LINE|L1|L1MB3	-	chr2	189770323	189783382	ORMDL1|ENST00000325795.7	-	189770323,189775564,189782421	189771902,189775716,189783382	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	220032388	220032415	220032388	-	RAMPAGE_only	2	3	8	0.181582	2.807355	chr1	220032081	220032353	SINE|Alu|AluY	-	chr1	219987295	220046451	EPRS|ENST00000609181.5	-	219987295,219988589,219996982,220001137,220005247,220006105,220007201,220010945,220018125,220018448,220018994,220019987,220022346,220024263,220025131,220030385,220032386,220033501,220034913,220040184,220046342	219987404,219988823,219997342,220001255,220005360,220006313,220007338,220011056,220018146,220018508,220019079,220020221,220022518,220024456,220025258,220030480,220032526,220033658,220035013,220040269,220046451	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	102235405	102235417	102235416	-	High_confidence	4	5	9	0.204280	2.750000	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102226139	102235424	MOK|ENST00000561150.5	-	102226139,102232534,102233687,102235364	102226408,102232671,102233789,102235424	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	36198012	36198045	36198012	-	RAMPAGE_only	3	3	12	0.272374	3.418296	chr5	36197737	36197974	DNA|TcMar-Tigger|Tigger16a	-	chr5	36194987	36207263	NADK2|ENST00000502355.5	-	36194987,36197540,36201105,36207169	36195282,36197664,36201161,36207263	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	169697635	169697654	169697644	+	RAMPAGE_only	2	2	8	0.181582	2.521641	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169662721	169723183	CLCN3|ENST00000504131.6	+	169662721,169663113,169663526,169680049,169687657,169689042,169690529,169692113,169695611,169697188,169703997,169706867,169713078,169719906	169662738,169663114,169663617,169680207,169687757,169689230,169690652,169692320,169695692,169697734,169704184,169707266,169713295,169723183	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	75891233	75891305	75891300	+	RAMPAGE_only	6	7	27	0.612841	4.458591	chr6	75891350	75891661	SINE|Alu|AluY	+	chr6	75867059	75919536	MSTRG.21277.9	+	75867059,75867430,75870646,75873206,75879819,75880042,75881688,75886003,75886843,75890056,75891227,75892529,75894813,75895230,75898372,75907604,75908495,75914062,75914812	75867105,75867523,75870685,75873300,75879950,75880120,75881818,75886094,75886994,75890265,75891306,75892690,75894840,75895260,75898411,75907708,75908627,75914281,75919536	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	65440072	65440961	65440159	+	RAMPAGE_only	32	32	1496	33.955914	7.533736	chr11	65440124	65440202	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	49239319	49239339	49239319	+	RAMPAGE_only	2	2	7	0.158885	2.807355	chr20	49239347	49239425	LINE|L1|L1MB4	+	chr20	49233837	49244077	DDX27|ENST00000471144.1	+	49233837,49238948,49239235,49241892,49242082,49242593,49243628	49236510,49239055,49239338,49241987,49242206,49242681,49244077	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	45833293	45833321	45833307	-	High_confidence	8	14	56	1.271077	4.429189	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	150457305	150457323	150457322	+	RAMPAGE_only	7	7	18	0.408560	3.614369	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150364710	150473556	RPRD2|ENST00000369068.4	+	150364710,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150364919,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	37104532	37104549	37104548	-	RAMPAGE_only	3	3	9	0.204280	3.000000	chr2	37104314	37104619	SINE|Alu|AluJo	-	chr2	37099209	37157047	EIF2AK2|ENST00000233057.8	-	37099209,37107473,37109193,37114730,37119958,37122505,37126288,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687,37148856,37156907	37107395,37107527,37109295,37114859,37120139,37122664,37126411,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147822,37149023,37157047	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	45594315	45594350	45594315	-	High_confidence	2	2	17	0.385863	3.625000	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45454592	45594491	MSTRG.2853.2	-	45454592,45459119,45461230,45464238,45489366,45533109,45553111,45594234	45458543,45459267,45461411,45464327,45489417,45533289,45553204,45594491	0.588235
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	74605038	74605061	74605038	+	RAMPAGE_only	8	8	17	0.385863	3.734522	chr18	74604824	74605092	LTR|ERVL?|LTR87	+	chr18	74597869	74804627	ZNF407|ENST00000582337.5	+	74597869,74630966,74641007,74781427,74803963	74597937,74635706,74641122,74781502,74804627	0.764706
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	154409551	154409582	154409581	+	RAMPAGE_only	6	6	11	0.249676	3.095795	chr5	154409601	154409687	LINE|L1|L1PREC2	+	chr5	154403776	154419033	GALNT10|ENST00000517958.1	+	154403776,154409540,154412888,154415782,154416813	154404216,154409762,154413005,154415932,154419033	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	128640882	128640883	128640882	+	RAMPAGE_only	4	6	6	0.136187	2.584963	chr7	128640704	128640990	SINE|Alu|AluJb	-	chr7	128574750	128653243	MSTRG.22907.3	+	128574750,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294,128629393,128631679,128638773,128642216,128648791,128651037,128651188	128574791,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626530,128629458,128631869,128641379,128642281,128648982,128651095,128653243	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	2961958	2962023	2961958	-	High_confidence	6	7	23	0.522049	3.969002	chr6	2961899	2962022	SINE|Alu|AluJr	-	chr6	2948158	2962108	SERPINB6|ENST00000380524.5	-	2948158,2948913,2953043,2954591,2955523,2959167,2961893	2948699,2949069,2953186,2954709,2955670,2959342,2962108	0.913043
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	180830869	180830891	180830869	-	High_confidence	3	4	12	0.272374	3.095795	chr5	180830726	180830835	LTR|ERV1|MER67A	-	chr5	180829953	180831605	HEIH|ENST00000623091.1	-	180829953	180831605	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	47172292	47172313	47172292	-	High_confidence	3	3	9	0.204280	2.750000	chr11	47172030	47172274	SINE|MIR|MIRb	-	chr11	47166267	47171557	ARFGAP2|ENST00000527776.5	-	47166267,47166505,47166759,47167908,47168122,47171452	47166386,47166599,47166886,47168043,47168251,47171557	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	73078286	73078303	73078286	+	RAMPAGE_only	7	7	18	0.408560	3.852169	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	32953929	32953968	32953939	+	RAMPAGE_only	4	4	14	0.317769	3.546594	chr11	32953932	32953995	LINE|CR1|L3	-	chr11	32934583	32975630	QSER1|ENST00000524678.1	+	32934583,32953856,32955295,32955987,32957868,32966299,32969045,32973396,32975247	32935435,32954179,32955412,32956121,32958086,32966437,32969143,32973549,32975630	0.928571
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	56286269	56286270	56286269	-	High_confidence	7	7	9	0.204280	2.500000	chr12	56286180	56286361	LINE|L1|L1MB3	+	chr12	56273195	56286091	CS|ENST00000546621.5	-	56273195,56274776,56275001,56275995,56282419,56282859,56283791,56285915	56273796,56274878,56275048,56276195,56282608,56282991,56283857,56286091	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	95509593	95509600	95509599	-	RAMPAGE_only	7	8	19	0.431258	3.947703	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95502902	95516674	TTC37|ENST00000508181.5	-	95502902,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524	95503003,95503938,95506992,95509687,95512618,95513645,95514923,95516409,95516674	0.526316
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	70700057	70700068	70700057	-	High_confidence	2	2	7	0.158885	2.584963	chr15	70699992	70700076	SINE|MIR|MIRb	-	chr15	70671877	70699666	UACA|ENST00000560523.5	-	70671877,70676492,70677107,70678098,70679607,70682757,70684264,70687539,70687749,70690453,70691298,70695016,70699526	70672001,70676591,70677140,70678206,70679676,70682795,70684446,70687646,70687820,70690511,70691363,70695105,70699666	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	155478137	155478146	155478144	-	RAMPAGE_only	2	3	7	0.158885	2.584963	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	27424833	27424836	27424835	-	High_confidence	5	7	10	0.226978	2.725481	chr3	27424753	27424871	SINE|MIR|MIRb	+	chr3	27421671	27424502	SLC4A7|ENST00000491211.1	-	27421671,27424036	27421779,27424502	0.700000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	96979809	96979837	96979809	+	RAMPAGE_only	7	7	25	0.567445	4.163856	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	0.920000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	142474407	142474454	142474407	-	High_confidence	24	27	60	1.361868	5.102480	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.933333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	145681365	145681390	145681365	-	High_confidence	10	10	28	0.635539	4.546594	chr7	145681186	145681435	LINE|L1|L1MB5	-	chr7	145675881	145681369	AC006007.1|ENST00000422084.1	-	145675881,145681108	145676292,145681369	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	179399196	179399215	179399214	-	RAMPAGE_only	17	17	26	0.590143	3.943465	chr3	179399201	179399502	SINE|Alu|AluSz	-	chr3	179396087	179451583	GNB4|NM_021629.3	-	179396087,179405189,179413411,179413714,179414884,179416492,179419398,179420888,179426143,179451345	179401319,179405406,179413613,179413781,179415047,179416556,179419505,179420927,179426242,179451583	0.961538
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	90251204	90251205	90251204	+	High_confidence	10	13	14	0.317769	3.546594	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	99671854	99671886	99671885	-	RAMPAGE_only	4	4	14	0.317769	3.546594	chr7	99671798	99672025	LINE|L1|L1MD2	+	chr7	99670909	99679996	CYP3A5|ENST00000463907.5	-	99670909,99672579,99674532,99676114,99679825	99671878,99672915,99674585,99676208,99679996	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	175988629	175988646	175988629	-	RAMPAGE_only	2	2	7	0.158885	2.521641	chr1	175988550	175988843	SINE|Alu|AluSx	+	chr1	175954836	176206440	MSTRG.1957.8	-	175954836,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176136487,176149005,176162868,176163814,176168664,176175909,176184632,176206348	175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176136547,176149074,176162988,176163891,176168748,176176007,176184692,176206440	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	19393734	19393735	19393734	-	High_confidence	178	178	196	4.448770	5.627486	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19392212	19393468	AC130456.7|ENST00000623838.1	-	19392212	19393468	0.744898
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	40954534	40954548	40954534	+	High_confidence	2	2	7	0.158885	2.521641	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954710	41141048	LOC644919|NR_109758.1	+	40954710,40962789,40974339,41140833	40954952,40962842,40974390,41141048	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	78532950	78532951	78532950	+	High_confidence	11	11	13	0.295071	3.392747	chr11	78532498	78533068	LTR|ERV1|LTR24C	+	chr11	78533175	78558565	AP003110.1|ENST00000526976.1	+	78533175,78546508,78555214,78558263	78533303,78546640,78555369,78558565	0.615385
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	57793995	57794073	57794056	+	RAMPAGE_only	10	10	53	1.202984	4.834679	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.660377
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	93735052	93735092	93735091	-	High_confidence	2	3	9	0.204280	3.000000	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730353	93735238	TAF1D|ENST00000529435.5	-	93730353,93730676,93731149,93731752,93732243,93733086,93733349,93734624	93730447,93730712,93731216,93731799,93732291,93733121,93733419,93735238	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	27558863	27558864	27558863	-	RAMPAGE_only	5	5	8	0.181582	3.000000	chr9	27558744	27558927	DNA|hAT-Charlie|MER103C	+	chr9	27546554	27573448	C9orf72|ENST00000488117.5	-	27546554,27548556,27550649,27556560,27558490,27561584,27562380,27565530,27566676,27573430	27548422,27548666,27550707,27556796,27560299,27561649,27562476,27565590,27567164,27573448	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	160199150	160199156	160199150	+	High_confidence	14	14	27	0.612841	4.060262	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.962963
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	159937218	159937239	159937218	-	RAMPAGE_only	7	7	15	0.340467	3.456565	chr1	159937165	159937358	SINE|MIR|MIRc	+	chr1	159927038	159945593	IGSF9|ENST00000476102.1	-	159927038,159927759,159928157,159929350,159929637,159929890,159930188,159930691,159931452,159931811,159932511,159934189,159934424,159934680,159936398,159936753,159937685,159942962,159943396,159945572	159927526,159927887,159929018,159929393,159929785,159929975,159930439,159930867,159931603,159931928,159932652,159934332,159934570,159934822,159936516,159936908,159937838,159943151,159943628,159945593	0.933333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	36009261	36009262	36009261	+	RAMPAGE_only	5	5	8	0.181582	2.521641	chr1	36009208	36009278	LINE|L1|L1ME4a	-	chr1	35931257	36056462	AGO3|ENST00000246314.10	+	35931257,35945691,35972023,36004340,36008689,36008896,36009474,36013629,36013914,36027113,36034173,36036176,36039789,36040306,36043446,36054945,36055636	35931445,35945863,35972232,36004475,36008777,36009044,36009594,36013752,36014048,36027298,36034333,36036267,36039984,36040441,36043548,36055145,36056462	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	210020639	210020677	210020676	+	RAMPAGE_only	6	7	17	0.385863	3.875000	chr2	210020462	210020693	SINE|MIR|MIRb	+	chr2	210002627	210021576	RPE|ENST00000429921.5	+	210002627,210003437,210015972,210016203,210016506,210017472,210019668	210002783,210003468,210016112,210016257,210016641,210017559,210021576	0.882353
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	43871492	43871498	43871492	-	RAMPAGE_only	2	2	7	0.158885	2.521641	chrX	43871388	43871689	LINE|L2|L2c	+	chrX	43766610	43882447	MAOB|ENST00000378069.4	-	43766610,43768653,43769306,43775174,43778681,43780341,43781447,43793418,43795738,43797124,43802171,43803299,43838867,43843669,43882253	43767618,43768716,43769418,43775272,43778739,43780395,43781544,43793578,43795888,43797266,43802263,43803404,43839005,43843764,43882447	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	160412459	160412478	160412477	-	RAMPAGE_only	5	5	17	0.385863	3.852169	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160406348	160408421	SLU7|ENST00000520841.1	-	160406348,160407475,160407745,160407970,160408328	160406629,160407615,160407813,160408068,160408421	0.882353
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	26474335	26474346	26474345	+	RAMPAGE_only	31	35	61	1.384566	5.110650	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.622951
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	136167003	136167013	136167003	+	High_confidence	2	4	8	0.181582	2.521641	chrX	136166859	136167051	SINE|MIR|MIR	-	chrX	136167003	136207093	FHL1|ENST00000630278.2	+	136167003,136168129,136169906,136206406,136207015	136167077,136168288,136169980,136206588,136207093	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	33638763	33638778	33638768	+	RAMPAGE_only	14	17	65	1.475357	5.225499	chr6	33638702	33639082	LINE|L2|L2c	-	chr6	33621378	33696574	ITPR3|NM_002224.3	+	33621378,33640483,33655765,33657931,33658669,33659020,33659465,33662527,33662910,33663499,33663737,33664869,33665052,33665834,33667128,33667791,33668514,33668973,33670324,33670670,33671164,33672028,33673590,33674207,33675690,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33683206,33684019,33684356,33684597,33684773,33685358,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33621691,33640554,33655887,33658018,33658828,33659119,33659549,33662674,33663006,33663550,33663880,33664969,33665213,33665976,33667290,33667964,33668634,33669156,33670576,33670815,33671306,33672228,33673720,33674265,33675856,33676932,33677089,33677629,33678543,33678839,33680133,33680454,33680680,33682644,33683397,33684168,33684465,33684688,33684943,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696574	0.892308
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	179333001	179333039	179333002	+	RAMPAGE_only	4	7	26	0.590143	3.719080	chr3	179332959	179333116	SINE|MIR|MIR1_Amn	-	chr3	179329633	179333730	ZNF639|ENST00000466663.1	+	179329633,179329933,179332988,179333268	179329728,179330055,179333123,179333730	0.884615
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	571748	571774	571754	-	High_confidence	7	8	30	0.680934	4.185230	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.866667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	14098219	14098222	14098219	+	RAMPAGE_only	2	4	6	0.136187	2.584963	chr16	14097559	14099382	LINE|L1|L1ME1	-	chr16	14079287	14266772	MRTFB|ENST00000318282.9	+	14079287,14140543,14210242,14212353,14213544,14217125,14218819,14234145,14240236,14245527,14246472,14248925,14251861,14252364,14258100,14260908	14079354,14140760,14210308,14212409,14213620,14217287,14218998,14234283,14240484,14245660,14247357,14249081,14252023,14252502,14258161,14266772	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	117835447	117835467	117835447	-	RAMPAGE_only	2	3	8	0.181582	2.521641	chr8	117835396	117835447	LTR|Gypsy|MamGypsy2-LTR	+	chr8	117799819	118111342	EXT1|ENST00000437196.1	-	117799819,117804721,117807216,117812871,117818434,117819675,117822464,117830229,117835443,118110973	117799897,117804893,117807377,117812961,117818530,117819794,117822597,117830349,117835551,118111342	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	65053813	65053913	65053820	-	RAMPAGE_only	10	10	57	1.293775	5.266915	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	9117541	9117554	9117541	+	High_confidence	2	2	9	0.204280	3.169925	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9117525	9119566	NDUFV2|ENST00000483511.1	+	9117525,9117837,9119325,9119473	9117638,9117903,9119388,9119566	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	232845833	232845839	232845838	+	RAMPAGE_only	5	6	12	0.272374	2.855389	chr2	232845876	232846546	LINE|CR1|L3	+	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	100349866	100349885	100349884	+	RAMPAGE_only	3	3	9	0.204280	2.947703	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336124	100358259	MSTRG.22727.5	+	100336124,100338178,100338772,100345864,100349716,100351251,100352563,100352760,100353209,100353372,100355142,100356749,100358219	100336337,100338264,100338889,100345968,100349887,100352478,100352667,100353123,100353270,100354012,100355240,100356883,100358259	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	26956526	26956534	26956526	-	High_confidence	3	3	9	0.204280	2.750000	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	23474844	23474845	23474844	+	RAMPAGE_only	4	4	7	0.158885	2.584963	chr18	23474513	23474894	LINE|L2|L2c	+	chr18	23466168	23481365	RIOK3|ENST00000581339.1	+	23466168,23473428,23474947,23477005,23479316,23481171	23466276,23473483,23475107,23477268,23479424,23481365	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	48534561	48534583	48534582	-	RAMPAGE_only	5	5	17	0.385863	3.852169	chr4	48534426	48534540	LINE|L1|L1M5	-	chr4	48521093	48546759	FRYL|ENST00000513401.5	-	48521093,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066	48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546759	0.882353
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	57688603	57688641	57688640	-	High_confidence	3	3	13	0.295071	3.084963	chr18	57688610	57688918	LTR|ERVL-MaLR|MLT1A0	+	chr18	57684117	57688668	ATP8B1|ENST00000588255.1	-	57684117,57685071,57688298	57684192,57685115,57688668	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	26841373	26841389	26841373	-	RAMPAGE_only	3	4	8	0.181582	2.750000	chr21	26841205	26841502	SINE|Alu|AluSz	+	chr21	26836286	26845409	MSTRG.15718.2	-	26836286,26838438,26839586,26839874,26840275,26841857,26842338,26844224	26838278,26838614,26839762,26840061,26841165,26841990,26842685,26845409	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	32027789	32027815	32027802	+	High_confidence	2	2	11	0.249676	2.921928	chr17	32027840	32027958	SINE|MIR|MIR3	+	chr17	32027789	32048021	LRRC37B|ENST00000583758.5	+	32027789,32030655,32031377,32034909,32035564,32045699,32047760	32027840,32030727,32031458,32034981,32035639,32045818,32048021	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	50756702	50756780	50756741	-	RAMPAGE_only	4	4	32	0.726330	4.538910	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.812500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	172165645	172165646	172165645	+	RAMPAGE_only	130	132	183	4.153698	6.384232	chr1	172165409	172165862	LINE|L2|L2c	+	chr1	172379017	172418466	DNM3|ENST00000485254.2	+	172379017,172387132,172388572,172418280	172379182,172387359,172388809,172418466	0.644809
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	20736862	20736883	20736882	-	RAMPAGE_only	18	18	32	0.726330	4.506891	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20733664	20741796	MSTRG.9321.4	-	20733664,20737707,20741508	20737286,20739071,20741796	0.906250
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	85330237	85330287	85330237	-	RAMPAGE_only	18	18	72	1.634242	5.569076	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.527778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	67183456	67183502	67183501	-	High_confidence	14	14	33	0.749028	4.390320	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.969697
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	28233986	28234048	28233986	-	RAMPAGE_only	16	16	127	2.882621	5.710255	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	48529375	48529382	48529375	+	High_confidence	4	4	9	0.204280	3.000000	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	164812699	164812718	164812704	-	RAMPAGE_only	3	3	9	0.204280	2.750000	chr2	164812594	164812756	SINE|MIR|MIR	+	chr2	164810585	164818125	MSTRG.14399.1	-	164810585	164818125	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	138031891	138033119	138032631	+	RAMPAGE_only	94	112	4633	105.158925	8.116618	chr3	138032613	138032735	SINE|Alu|FLAM_A	-	chr3	138010163	138033652	CLDN18|NM_016369.3	+	138010163,138023657,138024606,138029796,138030969	138010445,138023822,138024724,138029907,138033652	0.997842
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	6248470	6248471	6248470	+	High_confidence	989	1000	1021	23.174458	7.320718	chr9	6248331	6248575	LTR|ERVL-MaLR|MSTD	+	chr9	6247910	6257982	MSTRG.24329.8	+	6247910,6250473,6251139,6252865,6253551,6254461,6255967	6248555,6250599,6251265,6252991,6253602,6254553,6257982	0.867777
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	7905958	7905971	7905961	-	High_confidence	2	2	10	0.226978	2.947703	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	55796682	55796688	55796687	-	High_confidence	61	77	102	2.315176	5.522802	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781138	55796686	LINC00520|ENST00000650527.1	-	55781138,55793045,55793367,55794283,55796602	55781352,55793110,55793456,55794345,55796686	0.529412
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	104131816	104131831	104131830	-	RAMPAGE_only	3	3	7	0.158885	2.584963	chr12	104131717	104131821	LINE|L2|L2c	-	chr12	104121253	104128612	NFYB|ENST00000550189.1	-	104121253,104123225,104126113,104128423	104121321,104123423,104126244,104128612	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	5419977	5420006	5419977	+	High_confidence	2	2	10	0.226978	2.947703	chr17	5419928	5419992	LINE|L2|L2	+	chr17	5419887	5432608	RPAIN|ENST00000327154.10	+	5419887,5421295,5422768,5425970,5432541	5420291,5421466,5422829,5426082,5432608	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	108649131	108649161	108649160	-	RAMPAGE_only	3	3	8	0.181582	3.000000	chr12	108649117	108649212	SINE|MIR|MIRc	-	chr12	108647379	108696402	CORO1C|ENST00000421578.6	-	108647379,108648604,108648962,108652271,108654305,108657303,108658737,108662028,108678271,108696359	108647522,108648850,108649020,108652417,108654410,108657423,108658919,108662158,108678394,108696402	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	92061934	92061941	92061934	-	RAMPAGE_only	4	5	12	0.272374	3.277613	chr12	92061775	92062118	LTR|ERVL-MaLR|THE1B	-	chr12	91993084	92028257	LINC01619|ENST00000551306.1	-	91993084,92028169	91993529,92028257	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	52548770	52548829	52548828	-	RAMPAGE_only	26	27	119	2.701039	4.482587	chr15	52548772	52548988	DNA|TcMar-Tigger|MamRep434	-	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	0.983193
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	20928338	20928339	20928338	-	RAMPAGE_only	11	14	14	0.317769	3.664498	chr14	20928214	20928534	LTR|ERVL|MER21C	-	chr14	20801227	20803278	RNASE1|ENST00000397967.4	-	20801227,20802796	20802093,20803278	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	74198768	74198876	74198768	-	RAMPAGE_only	16	17	71	1.611544	4.378320	chrX	74198660	74199941	DNA|TcMar-Mariner|HSMAR2	+	chrX	74196350	74293574	FTX|ENST00000603037.2	-	74196350,74247331,74274341,74280393,74280930,74281701,74293351	74203909,74247424,74274410,74280494,74281085,74281848,74293574	0.971831
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	32575149	32575197	32575196	+	RAMPAGE_only	5	5	27	0.612841	4.161978	chr12	32575183	32575608	LTR|ERVL-MaLR|MSTB1	-	chr12	32569646	32646050	MSTRG.5427.18	+	32569646,32570696,32579596,32598496,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624975,32625653,32633548,32638654,32640275	32569988,32576449,32582467,32598586,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32625068,32625779,32633689,32638795,32646050	0.962963
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	37744608	37744613	37744608	+	High_confidence	4	4	9	0.204280	2.750000	chr20	37744532	37744694	DNA|hAT-Charlie|MER117	+	chr20	37744644	37872129	CTNNBL1|ENST00000373473.5	+	37744644,37746467,37765196,37767952,37777344,37777653,37779186,37802866,37840101,37842338,37859898,37860271,37871924	37744713,37746647,37765290,37768044,37777417,37777712,37779335,37803048,37840199,37842419,37860036,37860344,37872129	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	60402874	60402893	60402892	-	High_confidence	3	3	6	0.136187	2.584963	chr15	60402666	60403161	LINE|L2|L2c	+	chr15	60364428	60402883	ANXA2|ENST00000557904.5	-	60364428,60382341,60386027,60402768	60364523,60382441,60386086,60402883	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	93324861	93324897	93324878	-	High_confidence	23	26	133	3.018808	6.185743	chr1	93324761	93324840	LINE|CR1|L3b	-	chr1	93264646	93324691	CCDC18-AS1|ENST00000415150.5	-	93264646,93305387,93315148,93318167,93324634	93264772,93305470,93315269,93318228,93324691	0.518797
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	121281891	121281892	121281891	+	RAMPAGE_only	6	6	8	0.181582	2.750000	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	109581048	109581082	109581048	-	High_confidence	40	45	155	3.518160	3.861921	chr8	109580602	109581257	LINE|L2|L2c	+	chr8	109575974	109581058	SYBU|ENST00000527707.5	-	109575974,109577867,109579798,109580878	109576013,109578017,109580002,109581058	0.980645
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	86285668	86285669	86285668	-	RAMPAGE_only	4	4	7	0.158885	2.584963	chr2	86285416	86285647	SINE|MIR|MIR	-	chr2	86251351	86282210	REEP1|ENST00000489855.2	-	86251351,86254693,86263964,86282169	86252070,86254814,86264041,86282210	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	9390316	9390339	9390338	-	RAMPAGE_only	5	6	13	0.295071	3.180833	chr3	9389817	9390441	DNA|hAT-Charlie|Charlie1	-	chr3	9389914	9391822	THUMPD3-AS1|ENST00000522221.1	-	9389914,9391426	9390497,9391822	0.615385
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	233454549	233454571	233454570	+	RAMPAGE_only	8	8	13	0.295071	3.251629	chr2	233454032	233454641	LINE|L1|L1MB8	+	chr2	233438312	233472104	DGKD|ENST00000430834.1	+	233438312,233441886,233445622,233446711,233448086,233448275,233449102,233449981,233450921,233451963,233454356,233454762,233456898,233457220,233458283,233459756,233460193,233462347,233462642,233464163,233467085,233468422,233469370	233438379,233441995,233445762,233446796,233448181,233448375,233449376,233450131,233451050,233452060,233454464,233454873,233456995,233457328,233458397,233459891,233460345,233462459,233462735,233464283,233467203,233468553,233472104	0.615385
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	119579139	119579238	119579182	-	High_confidence	8	9	33	0.749028	3.781147	chr10	119579075	119579340	SINE|Alu|AluSz	+	chr10	119577474	119578940	TIAL1|ENST00000495821.1	-	119577474,119577640,119578725	119577535,119577736,119578940	0.848485
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	188883758	188884347	188884149	+	RAMPAGE_only	27	33	721	16.365117	6.903690	chr3	188884141	188884305	SINE|MIR|MIRc	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	213309864	213309890	213309864	+	RAMPAGE_only	1	1	8	0.181582	2.521641	chr2	213309538	213309970	LINE|L2|L2a	+	chr2	213296063	213364145	SPAG16|ENST00000414961.2	+	213296063,213297261,213310058,213317218,213340162,213364075	213296110,213297357,213310177,213317356,213340270,213364145	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	23854364	23854399	23854364	-	RAMPAGE_only	3	5	18	0.408560	3.616875	chr1	23854162	23854315	LINE|L1|L1ME3E	-	chr1	23845076	23868294	FUCA1|ENST00000374479.3	-	23845076,23846073,23848648,23854359,23859797,23863133,23865490,23867897	23845855,23846173,23848839,23854560,23859903,23863271,23865625,23868294	0.944444
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	222737949	222737977	222737949	+	High_confidence	3	3	13	0.295071	3.022055	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.692308
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	1407211	1407218	1407217	-	High_confidence	5	6	10	0.226978	2.725481	chr18	1407047	1407340	SINE|Alu|AluY	+	chr18	1268310	1407180	LINC00470|ENST00000412816.7	-	1268310,1272441,1275965,1368484,1406986	1269852,1272511,1276077,1368597,1407180	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	147225865	147225866	147225865	-	High_confidence	10	10	12	0.272374	3.095795	chr1	147225754	147226210	LTR|ERV1|LTR2C	-	chr1	147213358	147225873	FMO5|ENST00000533848.2	-	147213358,147215753,147224894,147225728	147213470,147215942,147225066,147225873	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	67138960	67138987	67138986	+	High_confidence	3	3	8	0.181582	2.807355	chr1	67139035	67139205	LTR|ERVL-MaLR|MLT1K	+	chr1	67138906	67259167	IL23R|ENST00000637002.1	+	67138906,67168091,67169341,67182835,67200741,67206909,67219573,67236712,67240178,67255836,67258477	67139161,67168190,67169638,67182959,67200897,67207055,67219730,67236802,67240281,67255927,67259167	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	134527714	134527914	134527815	+	High_confidence	25	27	385	8.738654	6.560297	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527619	134537087	AKR1B10|ENST00000475559.1	+	134527619,134530642,134531907,134533003,134535616,134536708,134537050	134527977,134530810,134532024,134533081,134535663,134536772,134537087	0.862338
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	42350329	42350370	42350369	-	High_confidence	9	9	37	0.839819	4.065875	chr21	42350245	42350552	SINE|Alu|AluJb	+	chr21	42346421	42350994	TFF2|ENST00000475297.1	-	42346421,42347485,42349880,42350266,42350878	42346546,42347632,42350030,42350359,42350994	0.783784
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	98943483	98943484	98943483	+	High_confidence	35	36	44	0.998703	5.169548	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.954545
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	81664294	81664347	81664343	+	RAMPAGE_only	12	12	51	1.157588	4.709300	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.647059
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	70100660	70100676	70100660	+	RAMPAGE_only	3	3	10	0.226978	3.121928	chr17	70100541	70100738	SINE|MIR|MIR	-	chr17	70096639	70133604	KCNJ16|ENST00000586462.1	+	70096639,70131994	70096926,70133604	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	94849395	94849449	94849448	+	RAMPAGE_only	28	28	75	1.702335	5.610625	chr4	94848411	94849793	LINE|L2|L2	-	chr4	94757976	95158450	BMPR1B|NM_001203.2	+	94757976,94875830,94996039,95104407,95114719,95115684,95123809,95124982,95129861,95131214,95148747,95152642,95154547	94758068,94875900,94996134,95104567,95114822,95115787,95123906,95125121,95130054,95131512,95148923,95152773,95158450	0.680000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	80485592	80485655	80485592	+	High_confidence	12	14	55	1.248379	5.222180	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.709091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	164717727	164717758	164717757	-	RAMPAGE_only	3	3	6	0.136187	2.584963	chr2	164717564	164717862	SINE|Alu|AluJr	-	chr2	164684824	164722491	MSTRG.14394.6	-	164684824,164692220,164694268,164699404,164700521,164704443,164704951,164722424	164686032,164692397,164695836,164699499,164700756,164704518,164722311,164722491	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	68689037	68689044	68689037	-	RAMPAGE_only	3	3	7	0.158885	2.521641	chr18	68688816	68689060	LINE|L1|L1PA16	+	chr18	68688416	68691353	TMX3|ENST00000566887.1	-	68688416,68691294	68689054,68691353	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	88585842	88585876	88585875	-	RAMPAGE_only	6	6	20	0.453956	4.037401	chr2	88585579	88585828	LINE|L2|L2-3_Crp	-	chr2	88575382	88579969	EIF2AK3|ENST00000478003.1	-	88575382,88576553,88579517	88575446,88576703,88579969	0.650000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	16863360	16863376	16863375	+	High_confidence	3	5	8	0.181582	2.500000	chr19	16863194	16863496	DNA|TcMar-Tigger|MER2	+	chr19	16863273	16878961	SIN3B|ENST00000595541.1	+	16863273,16865409,16866372,16869459,16871228,16876054,16876485,16877544,16878182,16878496	16863796,16865648,16866556,16870075,16871398,16876228,16876578,16877639,16878390,16878961	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	41729225	41729301	41729300	+	RAMPAGE_only	7	7	51	1.157588	4.543834	chr19	41729276	41729501	SINE|Alu|AluSc	+	chr19	41708617	41729798	CEACAM5|ENST00000221992.10	+	41708617,41709679,41714970,41715649,41717454,41718127,41719929,41720921,41727233,41729183	41708795,41710039,41715249,41715904,41717733,41718382,41720208,41721176,41727352,41729798	0.901961
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	7215101	7215119	7215101	+	RAMPAGE_only	4	4	8	0.181582	2.500000	chr7	7215067	7216893	LTR|ERV1|HUERS-P3b-int	-	chr7	7219792	7241642	MSTRG.21992.8	+	7219792,7237538	7234539,7241642	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	102947726	102947755	102947726	-	RAMPAGE_only	5	5	18	0.408560	4.058814	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.944444
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	5068707	5068724	5068707	+	RAMPAGE_only	10	11	18	0.408560	2.974938	chr9	5068306	5068768	LINE|L2|L2c	-	chr9	5041692	5128183	JAK2|NM_001322204.1	+	5041692,5044402,5050685,5054562,5055668,5064882,5066677,5069021,5069924,5072491,5073697,5077452,5078305,5080228,5080532,5081724,5089673,5090445,5090738,5123003,5126332,5126683	5041907,5044520,5050831,5054884,5055788,5065040,5066789,5069208,5070052,5072626,5073785,5077580,5078444,5080380,5080683,5081861,5089863,5090570,5090911,5123121,5126446,5128183	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	26512100	26512111	26512100	-	High_confidence	3	5	12	0.272374	3.277613	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	30758013	30758048	30758028	+	RAMPAGE_only	67	68	161	3.654346	4.813693	chr15	30758003	30758266	LINE|L2|L2a	-	chr15	30658739	30768126	AC091057.1|ENST00000562954.1	+	30658739,30716219,30750401,30767857	30658844,30716342,30750556,30768126	0.869565
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	64242609	64242620	64242619	+	High_confidence	12	13	25	0.567445	4.136842	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.960000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	2643778	2643796	2643778	-	RAMPAGE_only	8	8	13	0.295071	3.251629	chr11	2642482	2646252	LINE|L1|L1MA4A	-	chr11	2606982	2699847	MSTRG.3664.2	-	2606982,2699514	2699487,2699847	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	2800700	2800701	2800700	+	RAMPAGE_only	6	6	9	0.204280	2.947703	chr18	2800715	2800880	LINE|L1|HAL1ME	+	chr18	2796098	2801263	SMCHD1|ENST00000583800.1	+	2796098,2796406,2800522	2796107,2796521,2801263	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	88826706	88826721	88826706	-	RAMPAGE_only	2	2	6	0.136187	2.584963	chr10	88826415	88826965	LINE|L2|L2b	+	chr10	88819288	88851818	MSTRG.3209.1	-	88819288,88823279,88826037,88851586	88823018,88823378,88832026,88851818	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	61178333	61178366	61178333	+	High_confidence	3	3	10	0.226978	3.121928	chr2	61178267	61178502	SINE|Alu|AluSx3	-	chr2	61178377	61186769	AHSA2P|ENST00000642505.1	+	61178377,61181319,61183546,61184711,61185501,61185979,61186445,61186616	61179171,61181405,61183662,61184800,61185618,61186081,61186497,61186769	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	134708869	134708883	134708882	+	RAMPAGE_only	3	3	10	0.226978	3.169925	chr5	134708923	134709232	SINE|Alu|AluJb	+	chr5	134672192	134727823	MSTRG.20074.3	+	134672192,134676022,134679601,134682372,134686789,134688180,134692601,134693726,134697125,134697898,134703758,134705326,134708712,134715023,134718068,134720997,134723566,134724979	134675217,134676125,134679728,134682482,134686902,134688299,134692657,134693933,134697246,134698057,134703932,134705437,134708888,134715161,134718173,134721090,134723670,134727823	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	194486575	194486632	194486575	-	High_confidence	9	10	36	0.817121	4.461320	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402688	194486659	MSTRG.17960.6	-	194402688,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194486659	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	74744164	74744178	74744164	+	High_confidence	3	3	8	0.181582	2.521641	chr7	74744109	74744261	DNA|hAT-Charlie|MER117	+	chr7	74744343	74749452	GTF2I|ENST00000438130.6	+	74744343,74744757,74745882,74746336,74748014,74749024,74749267	74744508,74744941,74745941,74746411,74748116,74749090,74749452	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	122251851	122251864	122251851	-	RAMPAGE_only	4	5	8	0.181582	2.750000	chr9	122251686	122251830	LINE|L2|L2c	-	chr9	122241669	122247546	RBM18|ENST00000491850.5	-	122241669,122243743,122245255,122247517	122242043,122243868,122245341,122247546	0.875000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	48868595	48868617	48868613	-	High_confidence	837	981	4136	93.878116	7.749004	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.986460
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	103129672	103129688	103129672	+	High_confidence	2	2	8	0.181582	2.521641	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	0.625000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	103181328	103181329	103181328	-	RAMPAGE_only	55	55	56	1.271077	5.315730	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.660714
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	53464773	53464834	53464833	+	RAMPAGE_only	5	5	44	0.998703	4.927799	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.795455
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	232786881	232786887	232786886	+	RAMPAGE_only	3	3	7	0.158885	2.521641	chr2	232786672	232786916	LINE|L1|L1ME4b	+	chr2	232776751	232791337	GIGYF2|ENST00000427649.5	+	232776751,232787149,232790715,232791007,232791257	232776805,232787329,232790915,232791170,232791337	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	11192800	11192819	11192800	+	High_confidence	7	8	13	0.295071	3.418296	chr7	11192822	11192883	LINE|L1|L1MA1	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.538462
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	127496414	127496454	127496430	-	RAMPAGE_only	3	3	11	0.249676	3.459432	chr2	127496281	127496550	DNA|TcMar-Tigger|Tigger3b	+	chr2	127480805	127526468	IWS1|ENST00000295321.8	-	127480805,127486552,127489178,127489831,127491970,127493280,127494871,127495997,127498139,127502814,127503386,127504683,127523675,127526174	127481175,127486664,127489235,127489943,127492088,127493410,127494954,127496148,127498237,127502872,127503576,127505752,127523791,127526468	0.727273
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	28291847	28291848	28291847	+	High_confidence	86	89	97	2.201687	5.183911	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.762887
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	76050911	76050926	76050925	-	RAMPAGE_only	3	3	9	0.204280	2.947703	chr12	76050731	76051020	SINE|Alu|AluJo	+	chr12	76049433	76053158	NAP1L1|ENST00000547969.5	-	76049433,76050530,76053090	76049785,76050653,76053158	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	122164574	122164597	122164595	+	RAMPAGE_only	210	283	534	12.120627	6.466647	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122166767	122200083	MORN5|ENST00000486801.1	+	122166767,122174495,122199884	122166915,122174627,122200083	0.882022
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	76824348	76824360	76824348	+	High_confidence	2	2	11	0.249676	3.277613	chr18	76824188	76824534	LINE|CR1|L3	+	chr18	76824159	76970727	ZNF236|NM_007345.3	+	76824159,76849525,76851774,76868684,76871700,76875491,76878008,76880112,76881283,76895012,76899018,76904379,76905154,76908319,76910067,76910659,76912243,76913746,76915646,76919775,76923070,76925188,76927036,76927276,76927926,76937155,76947520,76955984,76959686,76960678,76968214	76824406,76849668,76851939,76868863,76871825,76875664,76878152,76880316,76881512,76895285,76899222,76904521,76905415,76908573,76910169,76910811,76912347,76913898,76915859,76920058,76923174,76925554,76927182,76927517,76928106,76937343,76947652,76956182,76959816,76960855,76970727	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	75590575	75590579	75590575	+	High_confidence	5	5	11	0.249676	2.921928	chr17	75590498	75590621	SINE|MIR|MIRc	-	chr17	75590776	75592491	MYO15B|ENST00000582561.2	+	75590776,75591171,75591615,75591976,75592237,75592463	75591016,75591246,75591712,75592080,75592301,75592491	0.636364
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	134485387	134485471	134485443	-	High_confidence	26	28	190	4.312583	6.346459	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.957895
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	6590246	6590293	6590269	+	High_confidence	6	6	38	0.862517	4.465946	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.973684
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	19430536	19430573	19430572	+	RAMPAGE_only	6	6	18	0.408560	3.530493	chr16	19430590	19430808	DNA|hAT-Charlie|Charlie18a	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	63610121	63610142	63610121	+	RAMPAGE_only	2	2	7	0.158885	2.521641	chr10	63609919	63610126	LINE|L1|L1ME2z	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	93431409	93431456	93431448	-	RAMPAGE_only	12	12	35	0.794423	4.741364	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.742857
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	108223508	108223554	108223516	+	High_confidence	4	4	20	0.453956	3.721928	chr11	108223533	108223589	SINE|MIR|MIR	+	chr11	108223102	108236534	ATM|ENST00000530958.5	+	108223102,108227775,108229177,108235669	108227696,108227888,108229323,108236534	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	105074422	105074436	105074422	+	RAMPAGE_only	8	8	14	0.317769	3.334679	chr7	105074131	105074480	LINE|L1|L1MC5a	-	chr7	105063349	105101478	KMT2E|ENST00000622386.1	+	105063349,105063376,105063389,105066726,105073618,105074642,105076042,105076962,105077302,105078845,105081687,105090008,105090127,105091215,105101424	105063375,105063388,105063580,105066807,105073677,105074815,105076081,105077193,105077433,105078963,105081797,105090126,105090273,105091314,105101478	0.785714
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	13697243	13697355	13697243	+	RAMPAGE_only	5	6	56	1.271077	4.536618	chr11	13697177	13697479	SINE|Alu|AluSz	+	chr11	13694899	13732346	MSTRG.3851.9	+	13694899,13710692,13712965,13727555,13728611	13708079,13712046,13721859,13727683,13732346	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	205720899	205720909	205720899	-	RAMPAGE_only	3	3	7	0.158885	2.584963	chr1	205720837	205721286	LINE|L1|L1PA10	+	chr1	205713193	205750056	MSTRG.2184.2	-	205713193,205719526,205720500,205723925,205727699,205729571,205749956	205718479,205719673,205720653,205723981,205727805,205729621,205750056	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	10553364	10553365	10553364	+	High_confidence	46	48	48	1.089495	5.072369	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.604167
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	75280707	75280724	75280717	+	RAMPAGE_only	5	5	15	0.340467	3.235926	chr18	75280540	75280747	SINE|MIR|MIRb	+	chr18	75282863	75289943	TSHZ1|ENST00000584217.1	+	75282863	75289943	0.866667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	65988640	65988674	65988673	+	High_confidence	8	13	33	0.749028	4.389365	chr5	65988722	65989005	SINE|Alu|AluJb	+	chr5	65988632	66078936	ERBIN|ENST00000508515.1	+	65988632,65992709,65994746,66012048,66013548,66014668,66021321,66023289,66024305,66025479,66025847,66026301,66028273,66038382,66043076,66044136,66046352,66048666,66050782,66053405,66076315,66076874,66078422	65988682,65992907,65994864,66012127,66013638,66014725,66021385,66023364,66024450,66025552,66025977,66026417,66028343,66038482,66043198,66044310,66046538,66048781,66050966,66054951,66076408,66076949,66078936	0.818182
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	12409849	12409864	12409854	+	RAMPAGE_only	3	3	11	0.249676	3.095795	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.727273
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	100663221	100663232	100663231	-	High_confidence	5	6	12	0.272374	3.277613	chr8	100662939	100663274	LINE|L1|L1PA17	+	chr8	100617643	100663219	SNX31|ENST00000520661.5	-	100617643,100630326,100635896,100657723,100663141	100617730,100630391,100636011,100657867,100663219	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr18	46087042	46087222	46087042	-	High_confidence	19	20	146	3.313879	6.178017	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.719178
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	6054548	6054656	6054548	-	RAMPAGE_only	12	15	103	2.337874	5.079666	chr7	6054207	6054503	SINE|Alu|AluSx1	-	chr7	6046722	6059056	EIF2AK1|ENST00000463213.5	-	6046722,6048806,6049911,6054545,6058965	6047091,6048844,6050045,6054704,6059056	0.621359
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	31587007	31587021	31587009	+	High_confidence	45	57	86	1.952011	5.305601	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.965116
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	75847184	75847217	75847204	-	RAMPAGE_only	3	4	13	0.295071	3.392747	chr17	75847119	75847351	SINE|MIR|MIR	-	chr17	75845836	75848662	WBP2|ENST00000586257.5	-	75845836,75846737,75846907,75847486,75847795,75848569	75846034,75846787,75846984,75847609,75847930,75848662	0.923077
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	33130037	33130048	33130037	+	RAMPAGE_only	3	4	12	0.272374	3.277613	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	3111674	3111679	3111674	+	RAMPAGE_only	4	5	8	0.181582	2.521641	chr4	3111496	3112202	LINE|L1|HAL1	-	chr4	3115328	3121712	HTT|ENST00000506137.1	+	3115328,3116084,3121227	3115445,3116263,3121712	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	56216106	56216142	56216141	+	High_confidence	7	7	20	0.453956	3.646439	chr4	56216025	56216165	SINE|MIR|MIR3	+	chr4	56216101	56328625	KIAA1211|ENST00000504228.6	+	56216101,56272320,56298213,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56216273,56272492,56298349,56307699,56310734,56313379,56316689,56323567,56324266,56328625	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	45192665	45192666	45192665	-	High_confidence	12	12	14	0.317769	3.664498	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45187169	45192285	LINC01121|ENST00000454673.1	-	45187169,45192139	45189249,45192285	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	53452748	53452791	53452748	+	RAMPAGE_only	3	3	15	0.340467	3.506891	chr4	53452618	53452755	LINE|L1|L1MEd	-	chr4	53442252	53453131	FIP1L1|ENST00000511055.1	+	53442252,53444047,53452919	53442707,53444103,53453131	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	34244753	34244839	34244815	-	High_confidence	14	26	108	2.451363	5.320370	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.648148
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	149284778	149284779	149284778	+	High_confidence	10	10	11	0.249676	2.646439	chr3	149283837	149285090	LTR|ERV1|LTR12C	+	chr3	149284781	149333653	AC093001.1|ENST00000489011.1	+	149284781,149333503	149285182,149333653	0.727273
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	99208174	99208179	99208174	-	High_confidence	3	3	8	0.181582	2.807355	chr7	99208098	99208244	SINE|Alu|AluSx3	-	chr7	99173573	99207506	KPNA7|ENST00000327442.6	-	99173573,99177919,99181882,99184928,99188299,99193018,99195069,99196083,99203105,99207400	99173794,99178066,99182065,99185162,99188563,99193101,99195338,99196166,99203240,99207506	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	107005109	107005156	107005139	-	RAMPAGE_only	2	2	8	0.181582	2.521641	chr12	107005092	107005130	SINE|MIR|MIRb	-	chr12	106999788	107001851	CRY1|ENST00000546722.1	-	106999788,107001279,107001763	107000082,107001368,107001851	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	127451076	127451108	127451104	-	High_confidence	6	6	22	0.499352	3.754442	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr6	31587201	31587275	31587201	+	High_confidence	27	27	96	2.178989	5.101591	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	113759894	113759899	113759894	-	High_confidence	7	7	16	0.363165	3.456565	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.687500
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	8410219	8410220	8410219	-	RAMPAGE_only	9	9	9	0.204280	2.725481	chr4	8410043	8410198	DNA|hAT-Charlie|MER20	-	chr4	8374467	8415855	ACOX3|ENST00000510365.5	-	8374467,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765	8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415855	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	20735278	20735375	20735305	-	RAMPAGE_only	7	9	37	0.839819	4.540402	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20733664	20741796	MSTRG.9321.4	-	20733664,20737707,20741508	20737286,20739071,20741796	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	20674497	20674498	20674497	+	High_confidence	24	24	24	0.544747	3.334963	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	21874241	21874280	21874279	-	RAMPAGE_only	2	2	10	0.226978	2.641604	chr1	21874115	21874327	SINE|MIR|MIRb	-	chr1	21822244	21896271	MSTRG.395.1	-	21822244,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21888667,21889980,21890426,21890584,21895921,21896174	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21888718,21890141,21890485,21890694,21895966,21896271	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	54240560	54240573	54240572	-	RAMPAGE_only	6	6	14	0.317769	3.324863	chr12	54240395	54240526	SINE|Alu|AluJr	-	chr12	54230945	54259545	CBX5|NM_001127322.1	-	54230945,54246114,54252040,54257513,54259269	54241905,54246215,54252227,54257692,54259545	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	153292908	153292920	153292908	+	RAMPAGE_only	2	2	7	0.158885	2.521641	chr4	153292828	153292946	SINE|MIR|MIRb	+	chr4	153257409	153294370	TRIM2|ENST00000433687.1	+	153257409,153275892,153292981,153294304	153257607,153276130,153293133,153294370	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr21	42607606	42607607	42607606	-	RAMPAGE_only	8	10	10	0.226978	3.121928	chr21	42607449	42607803	LTR|ERVL|LTR47A	-	chr21	42599279	42615058	LINC01671|ENST00000419628.1	-	42599279,42614852	42600848,42615058	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	103083799	103083829	103083828	+	RAMPAGE_only	3	5	9	0.204280	3.169925	chr7	103083874	103083961	SINE|MIR|MIRb	+	chr7	103086638	103098683	ARMC10|ENST00000431642.1	+	103086638,103092476,103098298	103086764,103092653,103098683	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	241324487	241324508	241324507	+	RAMPAGE_only	2	2	8	0.181582	2.750000	chr2	241324388	241324684	SINE|Alu|AluSc8	-	chr2	241315893	241325244	SEPT2|ENST00000461048.5	+	241315893,241316429,241317498,241324215,241324408	241315982,241316540,241317599,241324241,241325244	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	68569521	68569543	68569521	+	RAMPAGE_only	4	4	10	0.226978	2.947703	chr11	68569280	68569604	DNA|TcMar-Tigger|MER44A	-	chr11	68564423	68571216	PPP6R3|ENST00000526574.1	+	68564423,68567013,68569747,68571039	68564432,68567166,68569897,68571216	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	18063185	18063216	18063215	-	High_confidence	4	4	19	0.431258	3.947703	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.947368
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	88784868	88784891	88784868	+	RAMPAGE_only	3	3	9	0.204280	2.750000	chr2	88784858	88784980	DNA|hAT-Charlie|MER5A1	-	chr2	88782711	88805403	ANKRD36BP2|ENST00000575193.1	+	88782711,88782852,88784597,88784720,88786469,88786590,88788317,88788441,88792420,88797281,88801053,88802712,88804379,88804786,88805378	88782762,88782925,88784626,88784793,88786498,88786663,88788346,88788514,88792494,88797423,88801309,88802865,88804450,88804880,88805403	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	57274833	57274861	57274842	+	RAMPAGE_only	6	6	28	0.635539	4.132944	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	23951347	23951388	23951347	+	High_confidence	6	7	35	0.794423	4.574401	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	10941130	10941145	10941144	+	RAMPAGE_only	4	4	10	0.226978	3.169925	chr7	10941109	10941301	LINE|L2|L2b	-	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.600000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	128626758	128626823	128626822	-	RAMPAGE_only	4	4	17	0.385863	4.087463	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	123390725	123390761	123390760	+	High_confidence	10	10	27	0.612841	3.750465	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	71024045	71024064	71024055	+	High_confidence	6	6	17	0.385863	3.852169	chr2	71020399	71024471	LTR|ERV1|HERVE-int	+	chr2	71024074	71029931	OR7E91P|NR_002185.3	+	71024074,71024305,71028915	71024200,71024394,71029931	0.823529
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr10	103605823	103605824	103605823	-	RAMPAGE_only	10	11	14	0.317769	3.546594	chr10	103605815	103605885	LINE|CR1|L3	+	chr10	103599519	103693623	SH3PXD2A|ENST00000315994.6	-	103599519,103605797,103611580,103612852,103617196,103627088,103660982,103668607,103673437,103693027,103693333,103693599	103603789,103605917,103611630,103613190,103617314,103627202,103661114,103668652,103673556,103693056,103693478,103693623	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr11	134467260	134467265	134467264	+	RAMPAGE_only	15	15	31	0.703632	4.284684	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134466184	134487915	AP004608.1|ENST00000528482.6	+	134466184,134467864,134480844,134482626,134485961	134467615,134467987,134480911,134482730,134487915	0.903226
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	208542641	208542642	208542641	+	High_confidence	12	13	18	0.408560	3.947703	chr2	208542564	208543130	LTR|ERVL|MLT2B3	-	chr2	208542641	208825587	LOC101927960|NR_136588.1	+	208542641,208572012,208656825,208819551,208824194,208825398	208542991,208572167,208656989,208819655,208824350,208825587	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	2917803	2917811	2917810	-	RAMPAGE_only	5	7	10	0.226978	2.725481	chrX	2917473	2917770	SINE|Alu|AluJo	-	chrX	2903969	2929351	ARSD|ENST00000381154.5	-	2903969,2908720,2909816,2910658,2915555,2917803,2920600,2921902,2925615,2929231	2907632,2908842,2909979,2910793,2915692,2918227,2920723,2922024,2925765,2929351	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	156252925	156252931	156252930	-	High_confidence	5	5	10	0.226978	3.169925	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.600000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	38948236	38948246	38948245	-	High_confidence	8	8	13	0.295071	3.085055	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	45450739	45450766	45450739	-	High_confidence	6	7	29	0.658236	4.458591	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.758621
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	99671795	99671805	99671798	-	RAMPAGE_only	5	5	17	0.385863	3.750000	chr7	99671798	99672025	LINE|L1|L1MD2	+	chr7	99670909	99679996	CYP3A5|ENST00000463907.5	-	99670909,99672579,99674532,99676114,99679825	99671878,99672915,99674585,99676208,99679996	0.764706
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	20775862	20775936	20775862	-	RAMPAGE_only	9	9	77	1.747731	4.813366	chr1	20775005	20775936	DNA|TcMar-Tigger|Tigger3b	+	chr1	20775449	20780541	HP1BP3|ENST00000487117.1	-	20775449,20779811,20780344	20776750,20779911,20780541	0.909091
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	50766316	50766340	50766316	-	High_confidence	4	4	12	0.272374	3.277613	chr14	50766057	50766321	SINE|MIR|MIR	-	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.916667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	90405148	90405548	90405509	+	RAMPAGE_only	18	22	422	9.578473	6.515005	chr14	90405466	90405547	SINE|tRNA-RTE|MamSINE1	+	chr14	90396982	90408261	CALM1|ENST00000356978.8	+	90396982,90400064,90401258,90403861,90404378,90404688	90397233,90400095,90401402,90403968,90404514,90408261	0.995261
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	57050719	57050720	57050719	-	High_confidence	9	10	10	0.226978	2.947703	chr12	57050705	57050920	SINE|MIR|MIRc	-	chr12	57028516	57050765	MYO1A|NM_001256041.1	-	57028516,57029131,57029434,57029739,57030209,57031039,57036306,57036771,57036941,57037547,57037868,57038411,57038808,57039211,57041183,57041431,57043071,57043239,57043855,57044105,57046551,57046862,57047060,57047302,57047626,57047988,57048209,57049886,57050717	57028881,57029259,57029587,57029872,57030316,57031174,57036381,57036840,57037091,57037641,57038069,57038638,57039009,57039274,57041288,57041497,57043158,57043358,57044003,57044209,57046650,57046926,57047107,57047407,57047721,57048104,57048343,57050106,57050765	0.800000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	17376920	17376930	17376920	-	High_confidence	2	2	7	0.158885	2.584963	chr19	17376820	17376901	SINE|MIR|MIR1_Amn	-	chr19	17351447	17377349	PLVAP|NM_031310.2	-	17351447,17360527,17360771,17365285,17366098,17376919	17352368,17360609,17360832,17365998,17366195,17377349	0.714286
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	201163955	201163966	201163955	+	RAMPAGE_only	6	6	11	0.249676	2.663533	chr2	201163983	201164293	SINE|Alu|AluSx1	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	74245455	74245581	74245546	-	RAMPAGE_only	10	10	86	1.952011	4.610754	chrX	74245328	74245575	LINE|L1|L1MB4	+	chrX	74200228	74293472	MSTRG.25683.11	-	74200228,74241932,74276618,74280930,74281701,74293351	74203909,74275989,74280494,74281085,74281848,74293472	0.965116
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	70085589	70085630	70085589	-	High_confidence	3	3	12	0.272374	3.251629	chr2	70085547	70085755	SINE|MIR|MIR	+	chr2	69964409	70085595	PCBP1-AS1|ENST00000628322.2	-	69964409,69996685,70018014,70032132,70051202,70077300,70085546	69964427,69996888,70018131,70032255,70051305,70077381,70085595	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	97516040	97516051	97516050	-	RAMPAGE_only	5	5	10	0.226978	3.169925	chr2	97516030	97516368	LINE|L2|L2c	-	chr2	97492662	97589721	ANKRD36B|ENST00000359901.8	-	97492662,97507035,97507563,97507994,97509580,97511137,97513179,97515731,97523325,97532310,97536299,97536467,97538167,97538334,97540033,97540200,97541910,97542078,97543789,97543956,97545665,97545832,97547535,97547702,97549418,97549585,97551288,97551451,97553167,97553342,97555059,97555225,97556936,97557103,97558798,97558965,97560664,97560831,97576378,97578905,97580461,97584943,97585283,97589524	97492855,97507065,97507657,97508065,97509733,97512052,97513363,97515945,97523467,97532384,97536372,97536496,97538240,97538363,97540106,97540229,97541983,97542107,97543862,97543985,97545738,97545861,97547608,97547731,97549491,97549614,97551361,97551480,97553240,97553371,97555132,97555254,97557009,97557132,97558871,97558994,97560737,97560860,97576446,97579043,97580568,97585117,97585398,97589721	0.900000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	143608347	143608392	143608377	+	RAMPAGE_only	2	2	9	0.204280	3.169925	chr7	143608309	143608616	LINE|L1|HAL1ME	+	chr7	143598086	143609329	MSTRG.23080.3	+	143598086,143599321,143600526,143601387,143602773,143604584,143607792	143599033,143599419,143600740,143601627,143603111,143604835,143609329	0.888889
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	55069713	55069774	55069773	-	High_confidence	6	7	25	0.567445	3.969002	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55063219	55069540	RDH13|ENST00000588306.1	-	55063219,55064295,55068758,55069367	55063371,55064342,55068828,55069540	0.560000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr15	92939390	92939424	92939406	+	High_confidence	3	3	22	0.499352	3.246439	chr15	92939359	92939489	DNA|hAT-Charlie|MER5A	+	chr15	92939653	92949228	CHD2|ENST00000637613.1	+	92939653,92941821,92942842,92944414,92945820,92946037,92946247,92948951	92939718,92941955,92943068,92944515,92945865,92946082,92946340,92949228	0.772727
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	170226587	170226588	170226587	+	High_confidence	463	495	650	14.753572	6.980001	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.604615
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	72627651	72627675	72627661	-	High_confidence	3	3	13	0.295071	3.546594	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72479750	72627686	LINC01572|ENST00000563770.5	-	72479750,72491903,72523331,72540577,72555264,72570434,72617182,72627534	72479790,72491966,72523415,72540611,72555326,72570515,72617234,72627686	0.615385
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	30376935	30376965	30376964	-	High_confidence	5	5	19	0.431258	3.892407	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30374002	30376964	LINC00426|ENST00000416261.1	-	30374002,30375466,30376826	30374093,30375776,30376964	0.684211
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	46181625	46181644	46181643	+	RAMPAGE_only	18	19	50	1.134890	4.941468	chr1	46181615	46181833	LINE|L2|L2b	-	chr1	46183432	46185308	TSPAN1|ENST00000464786.5	+	46183432,46184190,46184593,46184784,46184959,46185224	46183683,46184397,46184668,46184883,46185115,46185308	0.520000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr9	19352178	19352179	19352178	+	RAMPAGE_only	4	4	6	0.136187	2.584963	chr9	19352180	19352291	LINE|CR1|L3b	+	chr9	19346727	19372594	MSTRG.24392.11	+	19346727,19350701,19352072,19352489,19356971,19357964,19360243,19361845,19369836	19347086,19350879,19352182,19352665,19357154,19358160,19360489,19361963,19372594	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr19	39335672	39335678	39335672	-	High_confidence	6	6	12	0.272374	2.855389	chr19	39335628	39335746	DNA|hAT-Tip100|MER91A	-	chr19	39328358	39335531	GMFG|ENST00000596583.5	-	39328358,39328999,39329547,39333076,39335434	39328548,39329073,39329626,39333126,39335531	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	38083053	38083054	38083053	+	High_confidence	4	4	7	0.158885	2.807355	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	128984179	128984196	128984179	-	RAMPAGE_only	3	3	8	0.181582	2.807355	chr7	128983986	128984151	LINE|L1|L1M5	-	chr7	128957222	129054883	TNPO3|ENST00000471166.1	-	128957222,128967279,128970147,128972425,128974867,128975818,128978982,128979970,128982247,128984167,128986728,128989960,128991998,128993806,128997388,129000428,129001058,129005015,129014978,129016982,129017956,129054650	128957315,128967392,128970315,128972582,128974962,128975935,128979123,128980031,128982324,128984259,128986920,128990202,128992090,128993914,128997535,129000567,129001234,129005159,129015135,129017056,129018157,129054883	0.500000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	134613031	134613113	134613031	-	High_confidence	65	65	385	8.738654	5.671911	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.659740
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr13	27445105	27445120	27445105	-	RAMPAGE_only	6	6	12	0.272374	3.459432	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.833333
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr16	63618044	63618046	63618045	-	High_confidence	87	116	126	2.859923	5.798370	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	28681346	28681398	28681397	+	RAMPAGE_only	7	7	20	0.453956	3.784184	chr17	28681439	28681743	SINE|Alu|AluSz6	+	chr17	28662197	28701735	SUPT6H|ENST00000347486.8	+	28662197,28672756,28673370,28674282,28674536,28674969,28675400,28676156,28677714,28678075,28678544,28678820,28681255,28681881,28682726,28682941,28683267,28683620,28684585,28684843,28686338,28686653,28687087,28687303,28688090,28689353,28690081,28690920,28693695,28695351,28696843,28697619,28697905,28699780,28700172,28700345,28700940,28701438	28662342,28672858,28673510,28674441,28674613,28675162,28675485,28676430,28677816,28678192,28678634,28678963,28681404,28681980,28682856,28683092,28683422,28683816,28684725,28684961,28686415,28686789,28687225,28687471,28688218,28689561,28690229,28691063,28693836,28695547,28697082,28697733,28698030,28699893,28700250,28700512,28701128,28701735	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr3	33864004	33864093	33864078	+	RAMPAGE_only	5	6	64	1.452659	4.961407	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.968750
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr5	128147315	128147316	128147315	+	RAMPAGE_only	5	5	7	0.158885	2.584963	chr5	128146813	128147429	LINE|L1|L1MC5	+	chr5	128083847	128188442	SLC12A2|ENST00000343225.4	+	128083847,128112813,128114211,128114585,128131066,128134164,128135699,128138596,128138823,128141829,128147621,128148753,128149996,128151240,128152705,128158052,128161659,128167760,128171666,128174540,128178566,128180882,128182854,128184365,128184788,128186495	128084710,128112933,128114287,128114681,128131206,128134275,128135808,128138724,128138908,128141981,128147729,128148877,128150098,128151396,128152805,128158164,128161800,128167867,128171746,128174666,128178689,128180994,128182941,128184501,128184856,128188442	0.571429
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	232816727	232816766	232816731	+	RAMPAGE_only	9	9	40	0.907912	4.774243	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.825000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chrX	48516606	48516641	48516606	+	RAMPAGE_only	5	5	12	0.272374	3.084963	chrX	48516343	48516815	LINE|L2|L2a	-	chrX	48509783	48520814	PORCN|NM_203474.1	+	48509783,48511294,48511891,48512325,48512588,48514126,48514239,48514524,48515716,48515889,48516060,48517182,48520374	48509956,48511487,48511935,48512507,48512719,48514141,48514365,48514625,48515793,48515953,48516146,48517293,48520814	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr7	64989994	64990031	64990030	-	RAMPAGE_only	4	4	19	0.431258	3.725481	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.947368
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	158167223	158167224	158167223	-	RAMPAGE_only	4	4	7	0.158885	2.521641	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158124579	158172566	FAM198B|NM_016613.6	-	158124579,158130785,158155610,158170465,158172338	158127614,158131012,158155825,158171599,158172566	0.857143
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	143247289	143247290	143247289	+	High_confidence	8	8	9	0.204280	2.750000	chr2	143246994	143247508	LTR|ERVL|LTR32	+	chr2	143247289	143437042	ARHGAP15|ENST00000469117.5	+	143247289,143250510,143435600,143436912	143247404,143250600,143435699,143437042	0.555556
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr20	44887697	44887710	44887697	+	RAMPAGE_only	2	2	9	0.204280	2.725481	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885739	44901833	YWHAB|ENST00000428262.1	+	44885739,44887544,44901530	44885886,44887742,44901833	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr8	29528668	29528702	29528701	+	RAMPAGE_only	14	14	40	0.907912	4.435114	chr8	29528587	29528733	DNA|hAT-Charlie|MER5A	-	chr8	29527311	29530323	AC084026.2|ENST00000521101.1	+	29527311,29529790	29527420,29530323	0.600000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	122279579	122279628	122279627	+	RAMPAGE_only	4	4	18	0.408560	3.350209	chr4	122278929	122279676	DNA|TcMar-Mariner|HSMAR2	-	chr4	122254858	122325784	KIAA1109|ENST00000419325.5	+	122254858,122255130,122257254,122258700,122262763,122263441,122264251,122266782,122271017,122272159,122274342,122275971,122279774,122281535,122286540,122289086,122301299,122304797,122305876,122307948,122309265,122313627,122315461,122316731,122318146,122324426,122325229,122325684	122254955,122255283,122257495,122258843,122262983,122263600,122264427,122266958,122271724,122272405,122274436,122276022,122279981,122281774,122286785,122289192,122301397,122304983,122306045,122308160,122309464,122313687,122315688,122316862,122318270,122324536,122325320,122325784	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	118020938	118020939	118020938	+	RAMPAGE_only	5	5	8	0.181582	3.000000	chr12	118020805	118020941	LINE|CR1|L3	+	chr12	118024915	118027392	RFC5|ENST00000472603.1	+	118024915,118025746,118026888	118025010,118025828,118027392	0.750000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr4	6673446	6673447	6673446	+	High_confidence	108	108	109	2.474061	4.921670	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	0.990826
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr17	41996322	41996324	41996323	-	RAMPAGE_only	4	6	9	0.204280	2.750000	chr17	41996098	41996284	SINE|MIR|MIRc	-	chr17	41976478	42017151	DNAJC7|ENST00000426588.7	-	41976478,41977260,41981854,41982254,41983562,41987818,41988731,41989403,41990263,41994869,41996310,41997114,42000481,42017039	41976770,41977323,41982007,41982401,41983636,41987910,41988896,41989557,41990382,41994944,41996424,41997239,42000570,42017151	0.666667
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	12183982	12184019	12184018	-	RAMPAGE_only	6	7	27	0.612841	4.356558	chr12	12183981	12184016	LINE|RTE-BovB|MamRTE1	-	chr12	12116028	12244304	LRP6|ENST00000538239.5	-	12116028,12120369,12121085,12124564,12125295,12126690,12130782,12131820,12135174,12138324,12147365,12148941,12150835,12158828,12159779,12162192,12164272,12165078,12179809,12181042,12183979,12186922,12203202,12244261	12119330,12120403,12121420,12124662,12125432,12126921,12130893,12132057,12135300,12138534,12147556,12149153,12151038,12159155,12159964,12162419,12164562,12165295,12179981,12181439,12184111,12187119,12203400,12244304	1.000000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr14	81170402	81170431	81170413	-	High_confidence	22	37	100	2.269780	5.648626	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.950000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	155343321	155343322	155343321	-	RAMPAGE_only	33	33	40	0.907912	4.182337	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.850000
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr1	179517522	179517558	179517545	+	High_confidence	277	300	985	22.357337	7.778269	chr1	179516075	179517979	LINE|L1|L1PB1	-	chr1	179517529	179555875	MSTRG.1993.13	+	179517529,179525333,179528326,179533794,179554511	179517681,179525447,179528431,179534962,179555875	0.946193
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr22	49657348	49657357	49657348	-	High_confidence	3	4	9	0.204280	3.000000	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.777778
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr12	122064332	122064376	122064375	+	RAMPAGE_only	48	50	102	2.315176	5.859488	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.607843
stomach_female_fetal_40_weeks_and_male_fetal_36_weeks	chr2	182030757	182030774	182030773	+	High_confidence	4	4	9	0.204280	2.750000	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.666667
stomach_male_adult_37_years	chr2	20331789	20331790	20331789	-	RAMPAGE_only	8	8	8	0.415675	2.750000	chr2	20331715	20331792	DNA|TcMar-Tigger|Tigger15a	-	chr2	20248691	20327386	PUM2|NM_001282791.1	-	20248691,20253821,20254862,20255215,20256032,20258242,20260336,20263192,20282946,20283342,20290651,20294375,20297552,20307977,20308313,20311493,20312235,20318536,20326260,20327309	20251716,20254014,20254984,20255341,20256170,20258371,20260466,20263460,20283231,20283486,20290790,20294518,20297678,20308071,20308584,20311663,20312423,20318645,20326385,20327386	0.875000
stomach_male_adult_37_years	chr20	35564185	35564222	35564185	-	High_confidence	3	3	13	0.675472	3.418296	chr20	35564181	35564251	SINE|MIR|MIRc	-	chr20	35558736	35564540	STRG.126819.14	-	35558736,35559155,35559340,35561851,35563853	35559052,35559256,35560638,35561937,35564540	0.923077
stomach_male_adult_37_years	chr1	31666510	31666589	31666510	-	High_confidence	3	3	22	1.143106	4.277613	chr1	31666238	31666608	LINE|L2|L2a	+	chr1	31660584	31666385	COL16A1|ENST00000470799.5	-	31660584,31661065,31661413,31661659,31662333,31662586,31665171,31665582,31665881,31666036	31660638,31661119,31661458,31661704,31662387,31662658,31665234,31665618,31665935,31666385	0.863636
stomach_male_adult_37_years	chr9	128114234	128114465	128114410	-	RAMPAGE_only	12	16	123	6.391004	4.862492	chr9	128114394	128114572	SINE|MIR|MIRb	+	chr9	128108580	128118693	SLC25A25-AS1|ENST00000418747.2	-	128108580,128113477,128115073,128117709,128117922	128112649,128114686,128115289,128117835,128118693	0.951220
stomach_male_adult_37_years	chr4	81154213	81154248	81154221	-	High_confidence	8	8	19	0.987228	3.642150	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	1.000000
stomach_male_adult_37_years	chr7	134527596	134527816	134527596	+	High_confidence	2708	2756	4016	208.668883	7.525296	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.972610
stomach_male_adult_37_years	chr20	51627610	51627615	51627610	-	RAMPAGE_only	3	3	8	0.415675	2.807355	chr20	51627270	51627593	LINE|L2|L2a	-	chr20	51597897	51625423	STRG.127500.2	-	51597897,51599180,51604816,51607526,51608517,51610100,51613676,51617489,51618661,51618953,51622073,51625191	51599141,51601347,51605020,51607584,51608626,51610165,51613832,51617554,51618806,51619043,51622172,51625423	0.625000
stomach_male_adult_37_years	chr20	63982761	63982771	63982761	+	RAMPAGE_only	2	2	8	0.415675	2.750000	chr20	63982478	63982815	LINE|L2|L2	-	chr20	63981134	64033100	PRPF6|ENST00000266079.4	+	63981134,63983046,63984906,63993406,63994915,63995326,63999044,63999602,64001076,64010199,64011284,64016722,64022756,64024554,64025938,64026981,64027602,64028477,64029376,64031917,64032840	63981316,63983215,63985025,63993485,63995092,63995482,63999139,63999759,64001239,64010318,64011503,64016845,64022878,64024693,64026058,64027158,64027736,64028569,64029491,64032044,64033100	0.500000
stomach_male_adult_37_years	chr3	50230995	50230996	50230995	+	High_confidence	11	11	11	0.571553	2.732159	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	1.000000
stomach_male_adult_37_years	chr4	142474407	142474421	142474407	-	High_confidence	24	25	44	2.286213	4.987730	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.704545
stomach_male_adult_37_years	chr2	222599990	222600053	222599990	-	RAMPAGE_only	5	5	21	1.091147	4.037401	chr2	222599989	222600062	LINE|RTE-BovB|MamRTE1	-	chr2	222571453	222625187	STRG.22697.3	-	222571453,222599927,222613810,222619644,222623649,222624271	222572022,222600083,222613928,222619737,222623730,222625187	0.714286
stomach_male_adult_37_years	chr4	128428005	128428006	128428005	+	High_confidence	9	9	13	0.675472	3.418296	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.769231
stomach_male_adult_37_years	chr3	44439852	44439913	44439895	-	RAMPAGE_only	10	12	54	2.805807	4.972209	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44437675	44449655	STRG.26232.2	-	44437675,44449512	44448739,44449655	0.722222
stomach_male_adult_37_years	chr7	104926626	104926641	104926626	-	High_confidence	9	9	16	0.831350	3.906891	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104911915	104926630	LHFPL3-AS2|ENST00000453666.2	-	104911915,104915705,104917559,104920384,104926452	104912076,104915827,104917980,104920425,104926630	0.687500
stomach_male_adult_37_years	chr4	152412488	152412529	152412528	-	High_confidence	14	15	46	2.390132	5.269631	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.978261
stomach_male_adult_37_years	chr1	1847986	1847994	1847992	-	RAMPAGE_only	3	4	10	0.519594	3.169925	chr1	1846859	1848097	DNA|TcMar-Tigger|Tigger2	+	chr1	1793244	1890401	GNB1|ENST00000434686.6	-	1793244,1804418,1806474,1815755,1817836,1825396,1839189,1839628,1890363	1793311,1804581,1806538,1815862,1817875,1825499,1839238,1839682,1890401	0.500000
stomach_male_adult_37_years	chr13	59708639	59708640	59708639	-	RAMPAGE_only	11	11	14	0.727431	3.546594	chr13	59708300	59708705	LINE|L2|L2-3_Crp	+	chr13	59665691	59751021	DIAPH3|ENST00000649952.1	-	59665691,59750838	59666846,59751021	0.642857
stomach_male_adult_37_years	chr8	37331981	37331991	37331987	-	High_confidence	3	4	11	0.571553	3.321928	chr8	37331719	37332166	LTR|ERVL-MaLR|MLT1C	-	chr8	37330671	37331984	AC091182.1|ENST00000518765.1	-	37330671,37331766	37331166,37331984	0.545455
stomach_male_adult_37_years	chr11	123060124	123060229	123060168	-	High_confidence	50	51	345	17.925987	5.530706	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	0.991304
stomach_male_adult_37_years	chr17	42662964	42662965	42662964	+	RAMPAGE_only	4	4	6	0.311756	2.584963	chr17	42662805	42662965	LTR|ERVL|MER21A	+	chr17	42660657	42666948	STRG.116583.1	+	42660657,42662972,42665475,42665677,42666086,42666322,42666602	42660707,42663503,42665562,42665827,42666239,42666484,42666948	1.000000
stomach_male_adult_37_years	chr3	134485414	134485490	134485443	-	High_confidence	7	7	50	2.597969	4.882043	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.580000
stomach_male_adult_37_years	chr11	93499286	93499313	93499286	-	High_confidence	5	5	33	1.714660	3.945465	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	1.000000
stomach_male_adult_37_years	chr1	222737760	222737761	222737760	+	High_confidence	5	5	7	0.363716	2.807355	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.714286
stomach_male_adult_37_years	chr16	72073244	72073245	72073244	+	RAMPAGE_only	8	8	8	0.415675	3.000000	chr16	72072861	72073376	LTR|ERV1|LTR10B	+	chr16	72063228	72077246	HPR|ENST00000561690.1	+	72063228,72073891,72074283,72075144,72076302,72076955	72063260,72073977,72074385,72075219,72076350,72077246	0.875000
stomach_male_adult_37_years	chr19	51350335	51350373	51350372	-	RAMPAGE_only	7	7	25	1.298985	4.053509	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.960000
stomach_male_adult_37_years	chr6	31587007	31587010	31587007	+	High_confidence	3	3	9	0.467634	3.000000	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.888889
stomach_male_adult_37_years	chr10	95437804	95437816	95437815	-	RAMPAGE_only	6	6	10	0.519594	2.947703	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000371241.5	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95354881,95357630,95367649,95381684,95383984,95384237,95397219,95399016,95406117,95410632,95421960,95432447,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95354967,95357803,95367699,95381799,95384114,95384285,95397283,95399189,95406147,95410777,95422073,95432576,95437555,95441135	0.700000
stomach_male_adult_37_years	chr16	63618045	63618046	63618045	-	High_confidence	9	14	14	0.727431	3.807355	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.714286
stomach_male_adult_37_years	chr20	50131135	50131140	50131139	-	High_confidence	4	4	8	0.415675	2.807355	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.875000
stomach_male_adult_37_years	chr14	100138763	100138813	100138812	+	RAMPAGE_only	4	4	13	0.675472	3.251629	chr14	100138741	100139027	LINE|L2|L2b	-	chr14	100019381	100140117	EVL|ENST00000544450.6	+	100019381,100084686,100097480,100123538,100126706,100128518,100129562,100132718,100135904,100137577,100137739	100019687,100084855,100097658,100123602,100126771,100128748,100129684,100132779,100135968,100137644,100140117	0.692308
stomach_male_adult_37_years	chr2	32477567	32477581	32477580	+	RAMPAGE_only	6	6	12	0.623513	3.418296	chr2	32477616	32477749	SINE|Alu|AluJb	+	chr2	32388810	32595648	STRG.13947.1	+	32388810,32392038,32395510,32401162,32401462,32406498,32414768,32429145,32430864,32433649,32435453,32436052,32439507,32441328,32442064,32442323,32443490,32445520,32448794,32453807,32463193,32464508,32465064,32467524,32467902,32468436,32469394,32470167,32471013,32473111,32476212,32477367,32478634,32479461,32481319,32482428,32485642,32487646,32488587,32490040,32491424,32493539,32499546,32501712,32502794,32503041,32505004,32507979,32509737,32510525,32512932,32514989,32518253,32518816,32524887,32525463,32529650,32531354,32543240,32545642,32547849,32549312,32575155,32590805,32593914,32595033	32388943,32392150,32395593,32401385,32401623,32406557,32416163,32429295,32431090,32433804,32435585,32436184,32439686,32441462,32442226,32442455,32443588,32445668,32448928,32453942,32463381,32464823,32465164,32467739,32468111,32468783,32469614,32470301,32471151,32473239,32476344,32477583,32478818,32479617,32481453,32482582,32485759,32487801,32488714,32490151,32491558,32493667,32500109,32501888,32502891,32503236,32505205,32508259,32509994,32510634,32513154,32515770,32518397,32518946,32525019,32525628,32529824,32531551,32543541,32545860,32548014,32549481,32575366,32590978,32594060,32595648	1.000000
stomach_male_adult_37_years	chr14	103675530	103675568	103675530	+	High_confidence	1	1	11	0.571553	3.277613	chr14	103675417	103675531	DNA|TcMar-Tigger|Tigger4a	+	chr14	103675551	103686200	KLC1|ENST00000553325.5	+	103675551,103675688,103677414,103679383,103684985,103685637	103675601,103675756,103677523,103679518,103685036,103686200	0.727273
stomach_male_adult_37_years	chr4	119217537	119217570	119217537	+	RAMPAGE_only	2	2	9	0.467634	2.947703	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119213178	119239312	USP53|ENST00000510737.1	+	119213178,119214069,119217549,119235289,119239217	119213218,119214222,119217673,119235411,119239312	0.666667
stomach_male_adult_37_years	chr8	99893444	99893445	99893444	-	High_confidence	25	26	26	1.350944	3.509275	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.961538
stomach_male_adult_37_years	chr1	176162936	176162964	176162936	-	RAMPAGE_only	19	22	36	1.870538	4.739098	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	176116645	176206440	COP1|ENST00000491600.5	-	176116645,176135009,176136487,176149005,176162868,176163814,176168664,176175909,176184632,176206348	176116681,176135086,176136547,176149074,176162988,176163891,176168748,176176007,176184692,176206440	0.805556
stomach_male_adult_37_years	chr9	114394411	114394413	114394412	-	High_confidence	15	25	32	1.662700	3.753928	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	1.000000
stomach_male_adult_37_years	chr12	31959160	31959186	31959178	+	High_confidence	4	4	14	0.727431	3.392747	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959418	31993107	KIAA1551|ENST00000312561.8	+	31959418,31960776,31970188,31980877,31987238,31992377	31959491,31960871,31970356,31985957,31987322,31993107	0.785714
stomach_male_adult_37_years	chr12	13376226	13376262	13376261	-	High_confidence	6	7	11	0.571553	2.921928	chr12	13376083	13376246	DNA|hAT-Charlie|Charlie15a	-	chr12	13373013	13376430	LINC01559|ENST00000527705.2	-	13373013,13376223	13373438,13376430	0.909091
stomach_male_adult_37_years	chr1	166850234	166850243	166850242	+	RAMPAGE_only	6	9	16	0.831350	2.815922	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.937500
stomach_male_adult_37_years	chr4	48546113	48546140	48546139	-	High_confidence	4	5	10	0.519594	2.725481	chr4	48546053	48546089	LINE|CR1|X7C_LINE	-	chr4	48521093	48546759	FRYL|ENST00000513401.5	-	48521093,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066	48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546759	0.900000
stomach_male_adult_37_years	chrX	111718118	111718152	111718151	+	High_confidence	3	3	13	0.675472	3.700440	chrX	111718150	111718232	LINE|L2|L2	-	chrX	111717878	111728270	ALG13|ENST00000623622.1	+	111717878,111718111,111720094,111723797,111724933,111726808,111727331,111727613,111728184	111717927,111718274,111720170,111723898,111725061,111727055,111727445,111727770,111728270	0.615385
stomach_male_adult_37_years	chr21	34512203	34512210	34512203	-	High_confidence	3	3	8	0.415675	2.521641	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.750000
stomach_male_adult_37_years	chr6	147252360	147252362	147252361	+	High_confidence	6	10	11	0.571553	2.921928	chr6	147251005	147252786	LINE|L1|L1PA7	+	chr6	147251934	147252868	STRG.56355.1	+	147251934	147252868	0.818182
stomach_male_adult_37_years	chr7	99660078	99660162	99660078	-	RAMPAGE_only	20	21	95	4.936141	4.019666	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99658832	99663582	CYP3A5|ENST00000473347.1	-	99658832,99662815	99660659,99663582	0.978947
stomach_male_adult_37_years	chr11	8776387	8776435	8776425	-	High_confidence	12	12	89	4.624385	5.640938	chr11	8776369	8776474	LINE|L2|L2b	-	chr11	8730980	8776679	ST5|ENST00000533016.1	-	8730980,8750620,8776191	8731209,8750725,8776679	0.584270
stomach_male_adult_37_years	chr3	101466869	101466895	101466869	-	RAMPAGE_only	2	2	11	0.571553	3.321928	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.909091
stomach_male_adult_37_years	chr2	95826567	95826646	95826567	-	High_confidence	4	9	30	1.558781	4.521641	chr2	95824349	95826979	LINE|L1|L1PA10	-	chr2	95807051	95826981	LINC00342|NR_103734.1	-	95807051,95814049,95824200	95807302,95814145,95826981	0.933333
stomach_male_adult_37_years	chr3	114693540	114693561	114693541	-	RAMPAGE_only	2	3	7	0.363716	2.584963	chr3	114693457	114693551	SINE|MIR|MIR	+	chr3	114338683	114758940	ZBTB20|ENST00000464560.5	-	114338683,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114758940	0.571429
stomach_male_adult_37_years	chr14	58424095	58424096	58424095	-	High_confidence	7	7	8	0.415675	2.807355	chr14	58423952	58424081	LINE|CR1|L3	-	chr14	58408523	58424159	STRG.103243.1	-	58408523,58410842,58411906,58424007	58409081,58410938,58411971,58424159	0.750000
stomach_male_adult_37_years	chr4	128428086	128428129	128428128	+	High_confidence	2	2	7	0.363716	2.584963	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428069	128519394	AC108062.1|ENST00000511497.5	+	128428069,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519394	0.857143
stomach_male_adult_37_years	chr8	144160987	144160992	144160991	+	High_confidence	5	5	12	0.623513	3.418296	chr8	144160811	144161348	LTR|ERVL-MaLR|MLT1E2	-	chr8	144161024	144261927	MROH1|ENST00000528919.5	+	144161024,144163770,144168294,144179454,144180177,144180424,144190783,144191714,144192308,144199121,144200427,144220599,144223107,144238755,144239034,144239322,144239613,144240100,144240569,144240991,144241394,144242368,144242601,144243493,144243862,144244221,144244443,144245155,144247300,144247566,144248876,144250211,144254812,144255508,144258776,144259239,144259910,144260185,144260676,144260906,144261113,144261283,144261654	144161089,144163848,144168440,144179586,144180340,144180523,144190935,144191855,144192401,144199200,144200541,144220673,144223230,144238863,144239179,144239363,144239755,144240153,144240677,144241111,144241517,144242515,144242628,144243616,144243942,144244336,144244539,144245260,144247436,144247679,144249029,144250366,144254978,144255705,144258914,144259354,144260057,144260374,144260832,144261041,144261216,144261349,144261927	1.000000
stomach_male_adult_37_years	chr3	188153250	188153251	188153250	+	High_confidence	5	6	7	0.363716	2.584963	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153874	188406278	LPP|ENST00000430340.5	+	188153874,188225404,188312834,188406111	188154021,188225527,188312918,188406278	0.571429
stomach_male_adult_37_years	chr3	52615423	52615438	52615423	-	High_confidence	7	7	19	0.987228	3.836592	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.947368
stomach_male_adult_37_years	chr8	102261172	102261189	102261172	-	High_confidence	5	5	10	0.519594	3.121928	chr8	102261109	102261291	DNA|hAT-Ac|OldhAT1	+	chr8	102253945	102261986	UBR5|ENST00000517465.1	-	102253945,102257631,102258315,102258984,102261145,102261914	102254514,102257717,102258424,102259129,102261259,102261986	1.000000
stomach_male_adult_37_years	chr14	102947722	102947727	102947726	-	RAMPAGE_only	5	5	15	0.779391	3.324863	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.866667
stomach_male_adult_37_years	chr22	38168076	38168090	38168076	-	High_confidence	3	3	7	0.363716	2.584963	chr22	38167963	38168270	LINE|L2|L2b	+	chr22	38140133	38168077	PLA2G6|ENST00000479641.5	-	38140133,38143104,38145437,38167942	38140169,38143288,38145653,38168077	0.571429
stomach_male_adult_37_years	chr19	50259239	50259259	50259258	+	RAMPAGE_only	3	3	7	0.363716	2.807355	chr19	50259302	50259451	SINE|MIR|MIRb	+	chr19	50210365	50309790	MYH14|ENST00000596571.5	+	50210365,50217614,50223082,50223246,50225584,50226902,50230524,50231929,50244241,50247003,50248986,50249649,50250514,50252638,50257298,50259143,50260645,50261474,50263311,50266876,50268160,50271408,50271848,50272559,50275990,50276756,50278082,50280036,50280230,50281593,50286481,50289435,50290886,50292260,50293232,50293563,50301660,50307048,50309004,50309639	50210770,50217771,50223110,50223349,50225677,50226966,50230623,50232070,50244337,50247122,50249139,50249823,50250688,50252753,50257486,50259265,50260715,50261635,50263420,50267008,50268367,50271546,50271972,50272731,50276203,50276901,50278289,50280141,50280383,50281842,50286694,50289648,50291048,50292389,50293321,50293687,50301869,50307157,50309177,50309790	0.714286
stomach_male_adult_37_years	chr16	3129668	3129669	3129668	-	RAMPAGE_only	6	6	9	0.467634	3.169925	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3128832	3132042	ZNF213-AS1|ENST00000573447.1	-	3128832,3131746	3129653,3132042	0.555556
stomach_male_adult_37_years	chr22	18149844	18149869	18149868	+	High_confidence	6	6	22	1.143106	3.697846	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
stomach_male_adult_37_years	chr2	233448872	233448873	233448872	+	RAMPAGE_only	9	9	9	0.467634	3.169925	chr2	233448452	233449071	LTR|ERV1|MER51A	-	chr2	233438312	233472104	DGKD|ENST00000430834.1	+	233438312,233441886,233445622,233446711,233448086,233448275,233449102,233449981,233450921,233451963,233454356,233454762,233456898,233457220,233458283,233459756,233460193,233462347,233462642,233464163,233467085,233468422,233469370	233438379,233441995,233445762,233446796,233448181,233448375,233449376,233450131,233451050,233452060,233454464,233454873,233456995,233457328,233458397,233459891,233460345,233462459,233462735,233464283,233467203,233468553,233472104	0.888889
stomach_male_adult_37_years	chr8	18063204	18063218	18063204	-	High_confidence	2	3	12	0.623513	3.277613	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.833333
stomach_male_adult_37_years	chr12	123617863	123617864	123617863	+	High_confidence	4	4	7	0.363716	2.807355	chr12	123617854	123617910	LINE|RTE-X|L4_A_Mam	-	chr12	123618015	123620422	DDX55|ENST00000421670.3	+	123618015,123619431,123619963	123618837,123619724,123620422	1.000000
stomach_male_adult_37_years	chr5	77088100	77088175	77088108	+	High_confidence	9	11	53	2.753847	5.095661	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.528302
stomach_male_adult_37_years	chr19	56106474	56106486	56106482	-	RAMPAGE_only	9	11	25	1.298985	4.323856	chr19	56106098	56106444	LINE|L1|L1MB8	-	chr19	56087365	56121280	ZNF787|ENST00000610935.1	-	56087365,56103138,56121171	56089092,56103227,56121280	0.560000
stomach_male_adult_37_years	chr15	75879161	75879162	75879161	+	High_confidence	6	6	8	0.415675	2.521641	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75879105	75901054	STRG.109172.1	+	75879105,75883365,75890434,75890918,75896994,75899426	75879188,75883424,75890483,75891014,75897061,75901054	0.750000
stomach_male_adult_37_years	chr16	12039343	12039363	12039362	+	High_confidence	2	2	8	0.415675	2.807355	chr16	12039199	12039367	SINE|MIR|MIRb	-	chr16	12038709	12051868	SNX29|ENST00000568359.1	+	12038709,12042896,12046383,12048371,12051846	12038787,12043077,12046454,12048620,12051868	0.625000
stomach_male_adult_37_years	chr3	194486575	194486578	194486575	-	High_confidence	4	4	8	0.415675	2.807355	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.875000
stomach_male_adult_37_years	chr2	86826129	86826134	86826129	-	RAMPAGE_only	3	5	9	0.467634	3.000000	chr2	86826118	86826191	SINE|MIR|MIR1_Amn	+	chr2	86815346	86861915	CD8B|ENST00000393759.6	-	86815346,86822320,86844921,86846683,86852996,86858056,86861822	86815718,86822374,86844958,86846773,86853086,86858416,86861915	0.777778
stomach_male_adult_37_years	chr1	155378330	155378333	155378332	-	RAMPAGE_only	3	6	9	0.467634	2.750000	chr1	155378311	155378369	LINE|CR1|L3	+	chr1	155335492	155440596	STRG.7768.2	-	155335492,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155440502	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155440596	0.777778
stomach_male_adult_37_years	chr1	166850120	166850144	166850123	+	RAMPAGE_only	15	19	43	2.234253	4.203838	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.976744
stomach_male_adult_37_years	chr2	29114149	29114171	29114158	+	High_confidence	3	3	14	0.727431	3.521641	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	1.000000
stomach_male_adult_37_years	chr10	60871910	60872045	60871910	-	High_confidence	3	4	35	1.818578	4.079679	chr10	60871677	60871885	SINE|MIR|MIRb	-	chr10	60871173	60871667	RHOBTB1|ENST00000496237.1	-	60871173,60871443	60871325,60871667	0.885714
stomach_male_adult_37_years	chr3	195688782	195688797	195688782	+	High_confidence	2	2	7	0.363716	2.521641	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688779	195708807	MUC20-OT1|ENST00000631105.2	+	195688779,195689338,195696360,195699029,195701379,195708746	195688797,195689438,195696589,195699207,195701495,195708807	1.000000
stomach_male_adult_37_years	chr2	108295806	108295893	108295810	+	RAMPAGE_only	20	21	62	3.221482	4.363145	chr2	108295796	108296089	SINE|Alu|AluJr	-	chr2	108293686	108309915	STRG.17360.3	+	108293686,108294228,108304573,108305171,108305414,108308351	108293818,108300935,108304700,108305266,108305595,108309915	1.000000
stomach_male_adult_37_years	chr14	95516120	95516123	95516120	+	High_confidence	3	5	8	0.415675	2.750000	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	1.000000
stomach_male_adult_37_years	chr17	47679934	47679989	47679934	+	High_confidence	2	2	12	0.623513	3.251629	chr17	47679684	47679996	SINE|Alu|AluY	-	chr17	47679879	47682589	KPNB1|ENST00000580158.1	+	47679879,47680507,47682403	47680134,47680669,47682589	0.833333
stomach_male_adult_37_years	chr22	40400701	40400718	40400717	+	RAMPAGE_only	3	3	9	0.467634	2.725481	chr22	40400675	40400747	SINE|MIR|MIR3	+	chr22	40370638	40410108	SGSM3|ENST00000485962.5	+	40370638,40400695,40401592,40402138,40404246,40404556,40405140,40405648,40406077,40406437,40407016,40407788,40408070,40408276,40408626,40408793,40408932,40409249,40409464,40409681	40370688,40400813,40401675,40402205,40404455,40404664,40405284,40405844,40406223,40406662,40407568,40407843,40408120,40408429,40408697,40408842,40409018,40409372,40409525,40410108	0.777778
stomach_male_adult_37_years	chr2	233417753	233417754	233417753	+	High_confidence	40	53	57	2.961685	4.858252	chr2	233417774	233417992	DNA|hAT-Charlie|MER20	+	chr2	233417768	233472096	STRG.23223.2	+	233417768,233434379,233434768,233435817,233436315,233437376,233438216,233441886,233445622,233446711,233448086,233448275,233449102,233449981,233450921,233451963,233454762,233456898,233457220,233458283,233459756,233460193,233462347,233462642,233467085,233468422,233469370	233419421,233434484,233434901,233435924,233436441,233437479,233438379,233441995,233445762,233447905,233448181,233448375,233449376,233450131,233451050,233452060,233454873,233456995,233457328,233458397,233459891,233460345,233462459,233464283,233467203,233468553,233472096	0.964912
stomach_male_adult_37_years	chr9	68742534	68742551	68742550	+	High_confidence	3	3	8	0.415675	2.521641	chr9	68742382	68742567	SINE|MIR|MIRb	-	chr9	68742254	68889133	PIP5K1B|ENST00000440050.5	+	68742254,68742500,68818460,68822614,68863836,68876676,68888980	68742354,68742657,68818545,68822683,68863967,68876794,68889133	0.750000
stomach_male_adult_37_years	chrX	53546444	53546454	53546444	-	RAMPAGE_only	9	9	16	0.831350	3.875000	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.875000
stomach_male_adult_37_years	chr10	45000495	45000514	45000503	+	High_confidence	6	6	12	0.623513	3.459432	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.916667
stomach_male_adult_37_years	chr5	154409563	154409582	154409581	+	RAMPAGE_only	8	8	14	0.727431	2.968919	chr5	154409601	154409687	LINE|L1|L1PREC2	+	chr5	154403776	154419033	GALNT10|ENST00000517958.1	+	154403776,154409540,154412888,154415782,154416813	154404216,154409762,154413005,154415932,154419033	0.928571
stomach_male_adult_37_years	chr10	121974531	121974553	121974546	-	High_confidence	4	4	15	0.779391	3.807355	chr10	121974357	121974506	DNA|hAT-Charlie|MER5A	-	chr10	121967645	121974754	NSMCE4A|ENST00000472431.1	-	121967645,121970938,121974003,121974305	121967806,121971069,121974081,121974754	0.533333
stomach_male_adult_37_years	chr12	10553364	10553365	10553364	+	High_confidence	96	101	119	6.183167	5.922543	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.638655
stomach_male_adult_37_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	17	17	17	0.883310	3.130718	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
stomach_male_adult_37_years	chr2	38082980	38083015	38083014	+	High_confidence	2	2	6	0.311756	2.584963	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.833333
stomach_male_adult_37_years	chr8	61647025	61647123	61647064	-	High_confidence	11	14	55	2.857766	4.845753	chr8	61646951	61647212	LINE|L2|L2a	+	chr8	61626140	61646872	ASPH|ENST00000519678.5	-	61626140,61633682,61637946,61642887,61643385,61643944,61644599,61646749	61626280,61633727,61638003,61642920,61643433,61644001,61644632,61646872	0.818182
stomach_male_adult_37_years	chr16	19430544	19430589	19430572	+	RAMPAGE_only	5	5	27	1.402903	4.088221	chr16	19430590	19430808	DNA|hAT-Charlie|Charlie18a	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	1.000000
stomach_male_adult_37_years	chr9	128921944	128921947	128921946	+	High_confidence	3	5	8	0.415675	2.521641	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.875000
stomach_male_adult_37_years	chr11	71745875	71745936	71745881	+	High_confidence	11	11	67	3.481279	5.045692	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.895522
stomach_male_adult_37_years	chr6	28354205	28354206	28354205	-	High_confidence	18	19	26	1.350944	4.323856	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.538462
stomach_male_adult_37_years	chr4	8436023	8436026	8436023	-	RAMPAGE_only	13	14	23	1.195066	4.392317	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.695652
stomach_male_adult_37_years	chr10	72355145	72355169	72355145	-	High_confidence	4	4	10	0.519594	2.521928	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
stomach_male_adult_37_years	chr3	51387526	51387565	51387564	+	High_confidence	5	5	18	0.935269	3.794653	chr3	51387476	51387632	SINE|Alu|AluJb	+	chr3	51387687	51389149	MANF|ENST00000482262.1	+	51387687,51388904	51387878,51389149	0.833333
stomach_male_adult_37_years	chr16	75248150	75248151	75248150	-	High_confidence	90	92	111	5.767492	6.023913	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.801802
stomach_male_adult_37_years	chr2	218287261	218287280	218287279	-	High_confidence	4	4	8	0.415675	2.750000	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.875000
stomach_male_adult_37_years	chr2	227164620	227164621	227164620	+	High_confidence	6	6	8	0.415675	3.000000	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.500000
stomach_male_adult_37_years	chr6	30546704	30546819	30546704	-	RAMPAGE_only	13	13	104	5.403776	5.185030	chr6	30546442	30546659	SINE|MIR|MIRb	-	chr6	30541376	30557174	GNL1|ENST00000376621.7	-	30541376,30546695,30547111,30547351,30552466,30553083,30553349,30554574,30554763,30555054,30555554,30556130	30546313,30546836,30547274,30547530,30552661,30553179,30553557,30554646,30554915,30555191,30555720,30557174	0.980769
stomach_male_adult_37_years	chr2	95826818	95827033	95826970	-	High_confidence	21	21	192	9.976202	5.586635	chr2	95824349	95826979	LINE|L1|L1PA10	-	chr2	95807051	95826981	LINC00342|NR_103734.1	-	95807051,95814049,95824200	95807302,95814145,95826981	0.916667
stomach_male_adult_37_years	chr17	75742146	75742192	75742191	+	RAMPAGE_only	3	3	9	0.467634	2.500000	chr17	75742080	75742255	SINE|MIR|MIRb	-	chr17	75724695	75757818	ITGB4|NM_001005619.1	+	75724695,75727194,75727403,75727650,75728376,75729264,75730240,75730874,75731245,75731811,75732162,75733489,75736050,75736287,75736564,75737321,75737537,75739671,75739879,75740357,75740792,75740981,75742340,75742581,75743712,75748840,75750110,75750679,75750973,75752173,75752445,75754575,75755054,75755700,75756428,75756703,75756942,75757199,75757415	75724782,75727277,75727505,75727855,75728473,75729436,75730504,75730964,75731368,75731973,75732239,75733692,75736154,75736386,75736694,75737444,75737644,75739705,75740071,75740461,75740851,75741005,75742489,75742761,75743861,75749045,75750268,75750860,75751111,75752356,75752577,75754815,75755213,75755850,75756617,75756859,75757107,75757310,75757818	0.777778
stomach_male_adult_37_years	chr1	52911575	52911608	52911575	-	High_confidence	8	8	14	0.727431	3.324863	chr1	52911549	52911601	LINE|RTE-BovB|MamRTE1	+	chr1	52896238	52912225	STRG.3196.4	-	52896238,52897436,52898579,52904645,52905033,52906518,52907867,52911565,52911722	52896597,52897484,52899224,52904833,52905090,52906611,52907954,52911653,52912225	0.714286
stomach_male_adult_37_years	chr11	287308	287315	287308	+	High_confidence	2	2	7	0.363716	2.521641	chr11	287048	287379	LINE|L2|L2a	-	chr11	287304	288298	AC136475.3|ENST00000533924.1	+	287304,288019	287334,288298	0.714286
stomach_male_adult_37_years	chr2	231072254	231072273	231072254	+	RAMPAGE_only	2	2	8	0.415675	2.750000	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.875000
stomach_male_adult_37_years	chr11	12195941	12195956	12195941	+	High_confidence	6	8	13	0.675472	3.251629	chr11	12195751	12196592	LINE|L2|L2	-	chr11	12195944	12197811	MICAL2|ENST00000532166.5	+	12195944,12197486	12196200,12197811	0.692308
stomach_male_adult_37_years	chr1	169124629	169124634	169124629	+	RAMPAGE_only	4	5	11	0.571553	3.321928	chr1	169124508	169124714	SINE|MIR|MIRb	+	chr1	169107906	169127399	ATP1B1|ENST00000494797.1	+	169107906,169111369,169124883,169127223	169108163,169111498,169125039,169127399	0.727273
stomach_male_adult_37_years	chr20	24930618	24930666	24930639	+	High_confidence	37	40	192	9.976202	6.300242	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930659	24931609	STRG.126299.1	+	24930659,24931346	24930774,24931609	0.708333
stomach_male_adult_37_years	chr3	170232584	170232615	170232614	+	RAMPAGE_only	11	11	29	1.506822	4.566109	chr3	170232572	170232840	SINE|Alu|AluJo	-	chr3	170222431	170305982	PRKCI|NM_002740.5	+	170222431,170235229,170259968,170263378,170267914,170270420,170273285,170275228,170280226,170281165,170281881,170284460,170291853,170293382,170295910,170297303,170298994,170303039	170222770,170235351,170260058,170263429,170268000,170270561,170273340,170275287,170280403,170281263,170281968,170284596,170291941,170293508,170295990,170297393,170299110,170305982	0.689655
stomach_male_adult_37_years	chr16	2669650	2669685	2669684	-	RAMPAGE_only	2	3	8	0.415675	2.521641	chr16	2669524	2670537	LTR|ERVK|LTR13	-	chr16	2663227	2671145	STRG.110858.3	-	2663227,2667962,2668547,2671023	2663407,2668497,2669561,2671145	0.750000
stomach_male_adult_37_years	chr6	78998255	78998285	78998255	-	RAMPAGE_only	2	2	11	0.571553	3.321928	chr6	78998067	78998230	LINE|L1|L1ME4a	-	chr6	78935866	79078236	PHIP|ENST00000275034.4	-	78935866,78945299,78946000,78946710,78947622,78954813,78955231,78955612,78958474,78961689,78963096,78965702,78965944,78969834,78970048,78970780,78978591,78982885,78985351,78988208,78990867,78997413,78998253,79001898,79003729,79015081,79015629,79016543,79017345,79017482,79019088,79025518,79025942,79042842,79060477,79060667,79077447,79077699,79077854,79078028	78941330,78945497,78946260,78946874,78947775,78954963,78955282,78955682,78958600,78961810,78963252,78965764,78966056,78969917,78970173,78970888,78978711,78983117,78985428,78988349,78990985,78997597,78998391,79002124,79003858,79015216,79015783,79016642,79017386,79017583,79019159,79025619,79026164,79043003,79060576,79060818,79077507,79077729,79077913,79078236	0.727273
stomach_male_adult_37_years	chr7	47401161	47401219	47401196	-	RAMPAGE_only	9	9	85	4.416548	4.988097	chr7	47401190	47401377	LINE|CR1|L3b	-	chr7	47369496	47403425	TNS3|ENST00000469470.1	-	47369496,47396799,47400392,47400784,47403267	47369621,47396904,47400458,47400914,47403425	0.682353
stomach_male_adult_37_years	chr1	29165956	29166006	29165956	-	RAMPAGE_only	3	3	16	0.831350	3.589898	chr1	29165912	29166153	SINE|tRNA-RTE|MamSINE1	-	chr1	29154696	29167151	STRG.1658.5	-	29154696,29159373,29160374,29165206	29154910,29159486,29160517,29167151	0.875000
stomach_male_adult_37_years	chr1	41186121	41186140	41186139	-	RAMPAGE_only	4	4	8	0.415675	3.000000	chr1	41186124	41186319	SINE|MIR|MIR1_Amn	+	chr1	41027198	41163017	SCMH1|NM_001172221.1	-	41027198,41028583,41033982,41037361,41046406,41048689,41070594,41075218,41113282,41116921,41142877,41151613,41160874,41161363,41162778	41028319,41028726,41034048,41037541,41046598,41048890,41070721,41075451,41113526,41117010,41143112,41151684,41160898,41161432,41163017	0.750000
stomach_male_adult_37_years	chr10	102449836	102449839	102449836	+	High_confidence	13	13	21	1.091147	3.880180	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.666667
stomach_male_adult_37_years	chr19	9140390	9140428	9140393	+	High_confidence	26	26	154	8.001745	6.357338	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.720779
stomach_male_adult_37_years	chr2	55618850	55618884	55618869	-	High_confidence	4	4	14	0.727431	3.085055	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.928571
stomach_male_adult_37_years	chr17	16776775	16776827	16776775	+	RAMPAGE_only	5	5	20	1.039188	3.846439	chr17	16776807	16778368	LINE|L1|L1PB1	+	chr17	16734734	16778421	STRG.115165.1	+	16734734,16761424,16762312,16763964,16771976,16773496	16735643,16761718,16762533,16764175,16772019,16778421	1.000000
stomach_male_adult_37_years	chr1	64007168	64007169	64007168	+	RAMPAGE_only	8	8	8	0.415675	3.000000	chr1	64007141	64007310	DNA|hAT-Charlie|MER117	+	chr1	64009302	64181492	ROR1|ENST00000545203.2	+	64009302,64049690,64050685,64137368,64140108,64142404,64158980,64177427	64009376,64049978,64050716,64137496,64140426,64142650,64159192,64181492	0.625000
stomach_male_adult_37_years	chr17	77127872	77127877	77127872	+	High_confidence	5	5	9	0.467634	3.169925	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.777778
stomach_male_adult_37_years	chr11	62600171	62600242	62600171	-	High_confidence	2	2	17	0.883310	4.087463	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.529412
stomach_male_adult_37_years	chr1	21875639	21875718	21875639	-	High_confidence	7	8	59	3.065604	5.280226	chr1	21875470	21875616	SINE|MIR|MIRb	-	chr1	21874477	21875208	HSPG2|ENST00000498495.1	-	21874477,21874615,21874890	21874533,21874729,21875208	0.627119
stomach_male_adult_37_years	chr3	111814320	111814329	111814320	+	RAMPAGE_only	5	5	9	0.467634	3.169925	chr3	111814117	111814498	LTR|ERVL|MLT2A1	+	chr3	111859179	111976515	PHLDB2|ENST00000412622.5	+	111859179,111884063,111913318,111919071,111920281,111939474,111940534,111945267,111948931,111952571,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111859576,111885412,111913702,111919215,111920419,111939630,111940645,111945357,111949075,111952712,111954029,111962312,111966703,111967824,111969909,111973817,111976515	0.555556
stomach_male_adult_37_years	chr12	10454493	10454505	10454493	-	High_confidence	5	6	11	0.571553	3.321928	chr12	10454129	10454577	LINE|L1|L1M3a	+	chr12	10446027	10454616	KLRC1|NM_213658.2	-	10446027,10447531,10449236,10449913,10450483,10450969,10453197,10454331	10446662,10447632,10449388,10449967,10450579,10451187,10453269,10454616	0.545455
stomach_male_adult_37_years	chr9	98943562	98943576	98943575	+	High_confidence	6	7	13	0.675472	3.584963	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.923077
stomach_male_adult_37_years	chr5	134612587	134612614	134612613	-	High_confidence	16	16	47	2.442091	4.926721	chr5	134612457	134612672	SINE|Alu|AluSz6	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.829787
stomach_male_adult_37_years	chr2	3533882	3533935	3533934	-	High_confidence	16	18	35	1.818578	4.741364	chr2	3533849	3534784	LTR|ERV1|LTR27E	+	chr2	3531983	3533782	AC108488.1|ENST00000439547.5	-	3531983,3533107,3533710	3532310,3533190,3533782	0.914286
stomach_male_adult_37_years	chr6	127330899	127330971	127330902	-	High_confidence	7	8	36	1.870538	4.440404	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.888889
stomach_male_adult_37_years	chrX	48683361	48683363	48683361	+	High_confidence	14	31	31	1.610741	4.502583	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
stomach_male_adult_37_years	chr6	107872863	107872888	107872863	-	RAMPAGE_only	5	7	19	0.987228	3.614369	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.947368
stomach_male_adult_37_years	chr2	159428333	159428359	159428356	-	High_confidence	17	17	43	2.234253	5.176151	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159385123	159428500	STRG.19621.2	-	159385123,159386352,159389344,159395768,159397344,159398828,159400598,159404848,159405021,159412334,159427940,159428310	159385369,159386607,159389485,159395834,159397389,159398894,159400664,159404910,159405114,159412545,159428042,159428500	0.860465
stomach_male_adult_37_years	chr20	35713388	35713399	35713388	-	High_confidence	4	4	11	0.571553	2.721928	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.909091
stomach_male_adult_37_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	9	9	11	0.571553	3.277613	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86441460	86492716	KDM3A|ENST00000409064.5	+	86441460,86442017,86449806,86451102,86455084,86456441,86456804,86456982,86464052,86466371,86470203,86474775,86477876,86478169,86478607,86480166,86481929,86482457,86483986,86484941,86485728,86489317,86489519,86490880,86491140,86492038	86441488,86442233,86449962,86451213,86455187,86456566,86456877,86457071,86464216,86466883,86470408,86474990,86478029,86478265,86478735,86480362,86482102,86482694,86484158,86485029,86485859,86489437,86489659,86491057,86491275,86492716	0.545455
stomach_male_adult_37_years	chr11	10806194	10806195	10806194	-	High_confidence	6	6	6	0.311756	2.584963	chr11	10806178	10806347	DNA|hAT-Charlie|MER5A	-	chr11	10804291	10806263	EIF4G2|ENST00000532152.5	-	10804291,10804912,10805906	10804418,10805015,10806263	0.666667
stomach_male_adult_37_years	chr5	52745586	52745609	52745599	-	RAMPAGE_only	3	3	11	0.571553	3.121928	chr5	52745284	52745728	LTR|ERVL|MLT2A1	-	chr5	52675192	52788026	AC022126.1|ENST00000502995.1	-	52675192,52685604,52785534,52787917	52675532,52685690,52785592,52788026	0.636364
stomach_male_adult_37_years	chr13	32527407	32527453	32527426	-	RAMPAGE_only	3	5	16	0.831350	3.456565	chr13	32527156	32527383	SINE|MIR|MIRc	-	chr13	32516893	32525579	N4BP2L2|ENST00000503814.1	-	32516893,32521372	32518003,32525579	0.500000
stomach_male_adult_37_years	chr19	58312275	58312288	58312275	+	RAMPAGE_only	2	3	6	0.311756	2.584963	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.833333
stomach_male_adult_37_years	chr12	132828165	132828183	132828165	-	High_confidence	2	2	7	0.363716	2.584963	chr12	132828028	132828217	LINE|L2|L2b	+	chr12	132827647	132828148	STRG.98387.1	-	132827647	132828148	0.714286
stomach_male_adult_37_years	chr3	155664980	155664995	155664994	-	RAMPAGE_only	5	5	11	0.571553	2.921928	chr3	155664915	155665290	LTR|ERVL-MaLR|MLT1J2	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	0.909091
stomach_male_adult_37_years	chr1	30738957	30738984	30738957	-	RAMPAGE_only	1	1	8	0.415675	2.521641	chr1	30738862	30738914	SINE|MIR|MIR	-	chr1	30732468	30757820	LAPTM5|ENST00000294507.3	-	30732468,30735172,30737603,30738939,30739808,30741639,30742455,30757658	30733917,30735265,30737699,30739062,30739937,30741716,30742549,30757820	0.750000
stomach_male_adult_37_years	chr16	20676161	20676162	20676161	-	High_confidence	20	21	26	1.350944	4.563856	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.807692
stomach_male_adult_37_years	chr16	10532158	10532182	10532180	-	RAMPAGE_only	3	4	11	0.571553	3.321928	chr16	10532094	10532204	DNA|hAT-Charlie|MER5A	-	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.909091
stomach_male_adult_37_years	chr16	16017915	16017916	16017915	+	RAMPAGE_only	18	18	22	1.143106	4.121928	chr16	16017761	16018060	LINE|L2|L2a	-	chr16	16016184	16122103	STRG.111378.4	+	16016184,16033108,16036471,16044449,16045835,16048141,16052723,16056091,16068155,16071641,16076325,16079351,16083365,16086823,16090404,16102626,16106737,16111374,16114765,16121974	16016621,16033170,16036603,16044680,16046013,16048257,16052816,16056295,16068302,16071729,16076401,16079478,16083542,16086991,16090588,16102717,16106873,16111582,16115076,16122103	0.681818
stomach_male_adult_37_years	chr3	129439736	129439767	129439763	-	High_confidence	7	7	20	1.039188	3.747413	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129433858	129439940	MBD4|ENST00000509587.1	-	129433858,129434061,129437719,129439729	129433984,129434136,129437950,129439940	0.800000
stomach_male_adult_37_years	chr13	48492758	48492791	48492783	-	High_confidence	5	5	25	1.298985	4.175736	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.760000
stomach_male_adult_37_years	chr10	94923234	94923253	94923234	+	RAMPAGE_only	3	3	8	0.415675	2.750000	chr10	94922422	94923572	DNA|TcMar-Tigger|Tigger1	+	chr10	94688153	94938895	STRG.83817.1	+	94688153,94694916,94706783,94720395,94724345,94733296,94775057,94775389,94780498,94781820,94820495,94842836,94849916,94905748,94921364,94938436	94688274,94695077,94706960,94720537,94724533,94733438,94775220,94775539,94780659,94781997,94820637,94843024,94850058,94906065,94923333,94938895	1.000000
stomach_male_adult_37_years	chr2	204544939	204544975	204544958	+	High_confidence	2	2	9	0.467634	3.169925	chr2	204544936	204545029	SINE|MIR|MIR3	+	chr2	204545216	205193348	STRG.21900.1	+	204545216,204545424,204686180,204965151,205047580,205104425,205113490,205118920,205121590,205124326,205125608,205158721,205172210,205176444,205185763,205193204	204545342,204546119,204686282,204965323,205047690,205104514,205113577,205119046,205121949,205124466,205125737,205158907,205172381,205176577,205185863,205193348	0.777778
stomach_male_adult_37_years	chr3	138132212	138132239	138132229	-	High_confidence	4	4	11	0.571553	3.121928	chr3	138132082	138132226	SINE|MIR|MIRb	-	chr3	138123717	138132387	A4GNT|ENST00000236709.3	-	138123717,138130848,138132211	138124878,138131282,138132387	0.727273
stomach_male_adult_37_years	chr13	79393643	79393661	79393643	-	RAMPAGE_only	15	17	31	1.610741	4.444188	chr13	79393527	79394632	LTR|ERV1|MER50-int	+	chr13	79319953	79405788	RBM26|ENST00000267229.11	-	79319953,79322348,79334343,79337101,79341122,79342663,79344247,79344668,79354438,79355219,79358273,79359574,79365577,79366054,79366632,79368729,79370944,79371841,79377378,79378788,79405703	79320710,79322462,79334430,79337302,79341227,79342831,79344322,79344794,79354561,79355384,79358433,79359686,79365718,79366195,79366872,79368990,79371162,79371930,79377515,79378907,79405788	0.774194
stomach_male_adult_37_years	chr19	38289184	38289188	38289187	+	High_confidence	3	5	9	0.467634	2.947703	chr19	38289206	38289513	SINE|Alu|AluSc8	+	chr19	38288405	38292468	SPINT2|ENST00000585357.1	+	38288405,38290536	38290280,38292468	1.000000
stomach_male_adult_37_years	chr4	1241382	1241444	1241443	-	RAMPAGE_only	6	6	22	1.143106	3.039354	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1248740	CTBP1|ENST00000513420.1	-	1225437,1228198,1238182,1241324,1248660	1225566,1228343,1238337,1241519,1248740	0.909091
stomach_male_adult_37_years	chr11	65181205	65181223	65181215	+	High_confidence	9	9	25	1.298985	4.418296	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.960000
stomach_male_adult_37_years	chr6	111387800	111387874	111387800	-	RAMPAGE_only	4	5	27	1.402903	4.053661	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.851852
stomach_male_adult_37_years	chr2	71422955	71423309	71423200	+	RAMPAGE_only	19	24	257	13.353561	5.911826	chr2	71423244	71423287	DNA|hAT-Ac|OldhAT1	+	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.996109
stomach_male_adult_37_years	chrX	71383124	71383147	71383124	+	RAMPAGE_only	2	2	8	0.415675	2.807355	chrX	71383170	71383464	LINE|L1|L1MC5a	+	chrX	71387085	71388301	TAF1|ENST00000472567.1	+	71387085,71388236	71387461,71388301	0.625000
stomach_male_adult_37_years	chr1	51403425	51403433	51403432	-	RAMPAGE_only	5	5	10	0.519594	3.321928	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	1.000000
stomach_male_adult_37_years	chr16	4355592	4355593	4355592	-	High_confidence	80	81	82	4.260669	5.768620	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.743902
stomach_male_adult_37_years	chr7	150323671	150323751	150323750	-	High_confidence	14	14	53	2.753847	4.815382	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	0.981132
stomach_male_adult_37_years	chr22	29801224	29801258	29801257	-	RAMPAGE_only	3	4	9	0.467634	2.947703	chr22	29801224	29801380	LINE|L2|L2	+	chr22	29788610	29804824	ASCC2|ENST00000487486.5	-	29788610,29790468,29792432,29793359,29800990,29801993,29804637	29789184,29790548,29792535,29793676,29801110,29802208,29804824	1.000000
stomach_male_adult_37_years	chr21	28048446	28048447	28048446	+	High_confidence	15	15	16	0.831350	2.872906	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.937500
stomach_male_adult_37_years	chr16	19430357	19430378	19430357	+	RAMPAGE_only	4	5	10	0.519594	2.947703	chr16	19430397	19430533	LINE|RTE-X|L4_B_Mam	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	0.900000
stomach_male_adult_37_years	chr9	121313981	121314021	121314020	+	RAMPAGE_only	75	75	232	12.054577	5.697741	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.969828
stomach_male_adult_37_years	chr4	71602747	71602814	71602757	+	High_confidence	12	12	60	3.117563	4.846244	chr4	71602665	71603204	LTR|ERVL|MLT2B3	-	chr4	71602997	71753277	STRG.36830.1	+	71602997,71753176	71603208,71753277	0.516667
stomach_male_adult_37_years	chr19	11507459	11507466	11507462	-	High_confidence	8	9	20	1.039188	3.932138	chr19	11507282	11507445	SINE|Alu|FRAM	-	chr19	11506074	11507709	ECSIT|ENST00000585898.1	-	11506074,11507456	11506428,11507709	0.850000
stomach_male_adult_37_years	chr4	2839432	2839442	2839441	+	RAMPAGE_only	4	5	9	0.467634	2.641604	chr4	2839159	2839457	SINE|Alu|AluJb	-	chr4	2818813	2841098	SH3BP2|ENST00000356331.9	+	2818813,2820613,2822934,2824612,2825125,2827229,2827605,2829492,2831570,2831922,2832330,2832989,2833696	2819070,2820753,2823037,2824730,2825196,2827318,2827674,2830147,2831679,2831978,2832412,2833049,2841098	1.000000
stomach_male_adult_37_years	chr1	51297997	51297998	51297997	-	RAMPAGE_only	5	5	8	0.415675	2.521641	chr1	51297625	51298239	LINE|L2|L2a	+	chr1	51297217	51331346	TTC39A|ENST00000262676.9	-	51297217,51302505,51303083,51305080,51305976,51309260,51311253,51312118,51312811,51321720,51331153	51302416,51302573,51303192,51305146,51306076,51309430,51311321,51312195,51312943,51321825,51331346	0.750000
stomach_male_adult_37_years	chr21	14763031	14763048	14763047	-	High_confidence	2	2	7	0.363716	2.584963	chr21	14763006	14763105	LINE|L2|L2a	-	chr21	14761709	14763090	AF127936.1|ENST00000435315.2	-	14761709,14762837	14762151,14763090	0.714286
stomach_male_adult_37_years	chr11	123061198	123061322	123061256	-	High_confidence	92	97	413	21.459225	5.813612	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.951574
stomach_male_adult_37_years	chr2	95831232	95831565	95831344	-	RAMPAGE_only	175	176	638	33.150086	4.425741	chr2	95831049	95831758	LINE|L1|L1PA12	+	chr2	95831049	95944694	STRG.16807.4	-	95831049,95835216,95851165,95851693,95852125,95853708,95855265,95857308,95859860,95867439,95876438,95880426,95880594,95882301,95882468,95884172,95884339,95886047,95886215,95887924,95888091,95889798,95889965,95891664,95891831,95893532,95893695,95895398,95895561,95897269,95897436,95899144,95899307,95901014,95901177,95902885,95903052,95904760,95904923,95905440,95906630,95906793,95908501,95908668,95910372,95910539,95912243,95912406,95914107,95914274,95915979,95916142,95917854,95918013,95919732,95919891,95921606,95921781,95923494,95923660,95925351,95925518,95927213,95927380,95929071,95929238,95935453,95935615,95938986,95941159,95944626	95831429,95837108,95851195,95851787,95852196,95853861,95856180,95857492,95860074,95867581,95876512,95880499,95880623,95882374,95882497,95884245,95884368,95886120,95886244,95887997,95888120,95889871,95889994,95891737,95891860,95893605,95893724,95895471,95895590,95897342,95897465,95899217,95899336,95901087,95901206,95902958,95903081,95904833,95904952,95905503,95906703,95906822,95908574,95908697,95910445,95910568,95912316,95912435,95914180,95914303,95916052,95916171,95917927,95918042,95919805,95919920,95921679,95921810,95923567,95923689,95925424,95925547,95927286,95927409,95929144,95929267,95935526,95935644,95939015,95941199,95944694	0.981191
stomach_male_adult_37_years	chr10	71979129	71979137	71979136	+	RAMPAGE_only	4	7	12	0.623513	3.277613	chr10	71979150	71979318	SINE|MIR|MIRb	+	chr10	71964364	72013564	CHST3|ENST00000373115.4	+	71964364,72005735,72007171	71964694,72005982,72013564	0.750000
stomach_male_adult_37_years	chr19	16066963	16066964	16066963	+	High_confidence	4	4	7	0.363716	2.584963	chr19	16066937	16067003	LINE|L2|L2c	-	chr19	16067020	16076141	TPM4|ENST00000589897.1	+	16067020,16067533,16076046	16067306,16067738,16076141	0.857143
stomach_male_adult_37_years	chr2	181954491	181954526	181954491	+	High_confidence	8	8	33	1.714660	4.327820	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.818182
stomach_male_adult_37_years	chr3	134485387	134485388	134485387	-	High_confidence	5	6	8	0.415675	3.000000	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.750000
stomach_male_adult_37_years	chr5	176411455	176411459	176411458	-	RAMPAGE_only	18	19	29	1.506822	4.556088	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392792	176406669	STRG.48885.3	-	176392792,176397606,176397929,176406156	176392945,176397718,176398047,176406669	0.620690
stomach_male_adult_37_years	chr13	59708596	59708607	59708596	-	RAMPAGE_only	12	12	43	2.234253	4.556141	chr13	59708300	59708705	LINE|L2|L2-3_Crp	+	chr13	59665691	59751021	DIAPH3|ENST00000649952.1	-	59665691,59750838	59666846,59751021	0.651163
stomach_male_adult_37_years	chr5	151687244	151687245	151687244	-	High_confidence	6	6	8	0.415675	2.807355	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.875000
stomach_male_adult_37_years	chr16	29841993	29842079	29842078	+	RAMPAGE_only	7	7	26	1.350944	4.132944	chr16	29842127	29842270	SINE|Alu|AluJb	+	chr16	29830514	29848039	MVP|NM_001293205.1	+	29830514,29830877,29833732,29833934,29835703,29836721,29840177,29841595,29844492,29845862,29846157,29847196,29847761	29830674,29831073,29833856,29834066,29835798,29836958,29840459,29841840,29844879,29845979,29846284,29847385,29848039	1.000000
stomach_male_adult_37_years	chr5	31530870	31530904	31530877	-	RAMPAGE_only	3	3	12	0.623513	2.855389	chr5	31530667	31530954	LINE|L2|L2c	+	chr5	31400496	31532061	DROSHA|ENST00000511367.6	-	31400496,31405676,31406852,31409055,31409249,31410745,31421271,31422786,31424426,31429474,31431575,31435764,31437238,31448546,31449280,31451532,31464235,31466181,31467938,31472062,31483553,31484880,31486490,31493206,31495285,31504554,31508620,31511034,31514987,31515453,31521122,31526078,31529039,31530797,31531989	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31422944,31424471,31429545,31431678,31435864,31437298,31448607,31449419,31451640,31464343,31466281,31468063,31472232,31483628,31484962,31486562,31493293,31495372,31504635,31508775,31511176,31515219,31515564,31521215,31526912,31529105,31530924,31532061	0.916667
stomach_male_adult_37_years	chr19	3575617	3575625	3575624	+	High_confidence	3	5	13	0.675472	3.546594	chr19	3575668	3575971	SINE|Alu|AluSx1	+	chr19	3575650	3578671	HMG20B|ENST00000487894.5	+	3575650,3576552,3576891,3577980,3578508	3576307,3576625,3577107,3578113,3578671	1.000000
stomach_male_adult_37_years	chr19	55280199	55280219	55280218	-	High_confidence	4	6	12	0.623513	2.845351	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.916667
stomach_male_adult_37_years	chr11	75261565	75261585	75261565	-	High_confidence	5	5	12	0.623513	3.584963	chr11	75261362	75261565	DNA|hAT-Charlie|Charlie15a	-	chr11	75260128	75262466	AP001972.5|ENST00000624624.1	-	75260128	75262466	1.000000
stomach_male_adult_37_years	chr17	47067498	47067518	47067498	-	High_confidence	148	157	483	25.096382	5.868335	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.935818
stomach_male_adult_37_years	chr5	150640347	150640352	150640347	+	High_confidence	4	4	8	0.415675	2.807355	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.875000
stomach_male_adult_37_years	chr17	2667103	2667196	2667195	+	High_confidence	13	13	41	2.130335	4.832923	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.853659
stomach_male_adult_37_years	chr15	93863033	93863066	93863065	+	High_confidence	22	22	56	2.909725	5.426034	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863051	93875085	STRG.110095.1	+	93863051,93865373,93869690,93874933	93863216,93865648,93869833,93875085	0.607143
stomach_male_adult_37_years	chr6	11728515	11728555	11728554	-	High_confidence	16	16	48	2.494050	5.155549	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.604167
stomach_male_adult_37_years	chr17	19386313	19386460	19386313	-	High_confidence	7	7	45	2.338172	5.004886	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.977778
stomach_male_adult_37_years	chr12	92061934	92061939	92061934	-	RAMPAGE_only	8	9	15	0.779391	3.324863	chr12	92061775	92062118	LTR|ERVL-MaLR|THE1B	-	chr12	91993084	92028257	LINC01619|ENST00000551306.1	-	91993084,92028169	91993529,92028257	0.800000
stomach_male_adult_37_years	chr19	52215776	52215832	52215807	+	RAMPAGE_only	3	3	18	0.935269	3.690117	chr19	52215807	52215838	LINE|L2|L2b	-	chr19	52201092	52226417	PPP2R1A|ENST00000462990.5	+	52201092,52201943,52205962,52211259,52212685,52212954,52215778,52216003,52216528,52219690,52220188,52220978,52222098,52225716,52225964	52201694,52202034,52206063,52211492,52212833,52213110,52215893,52216074,52216663,52219864,52220249,52221133,52222241,52225808,52226417	0.833333
stomach_male_adult_37_years	chr1	192986920	192986946	192986933	-	RAMPAGE_only	4	4	18	0.935269	3.058814	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192935795	192957713	AL390957.1|ENST00000647436.1	-	192935795,192957303	192935903,192957713	0.722222
stomach_male_adult_37_years	chr1	222737881	222737915	222737881	+	High_confidence	2	2	7	0.363716	2.807355	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.714286
stomach_male_adult_37_years	chr2	87469947	87469950	87469949	+	High_confidence	12	22	25	1.298985	3.173533	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87469829	87470704	STRG.16415.1	+	87469829	87470704	0.800000
stomach_male_adult_37_years	chr17	19281958	19281968	19281958	+	High_confidence	2	2	7	0.363716	2.584963	chr17	19281937	19282036	LINE|L2|L2a	-	chr17	19281954	19335194	EPN2|ENST00000395620.6	+	19281954,19309884,19312051,19313104,19328710,19329560,19331852,19333955	19283714,19309997,19312144,19313279,19328887,19329647,19332068,19335194	0.857143
stomach_male_adult_37_years	chr12	123390725	123390761	123390725	+	High_confidence	9	11	31	1.610741	4.696132	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	1.000000
stomach_male_adult_37_years	chr1	147225865	147225866	147225865	-	High_confidence	8	8	9	0.467634	3.000000	chr1	147225754	147226210	LTR|ERV1|LTR2C	-	chr1	147213358	147225873	FMO5|ENST00000533848.2	-	147213358,147215753,147224894,147225728	147213470,147215942,147225066,147225873	0.777778
stomach_male_adult_37_years	chr7	11192786	11192803	11192800	+	High_confidence	9	11	31	1.610741	4.323231	chr7	11192822	11192883	LINE|L1|L1MA1	+	chr7	11192759	11197417	AC004160.1|ENST00000611449.1	+	11192759,11197309	11193050,11197417	0.612903
stomach_male_adult_37_years	chr2	55268641	55268673	55268641	-	High_confidence	2	2	8	0.415675	3.000000	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	1.000000
stomach_male_adult_37_years	chr12	96172056	96172073	96172056	-	High_confidence	4	5	10	0.519594	2.725481	chr12	96171948	96172107	SINE|Alu|AluJb	-	chr12	96160691	96172126	LINC02452|ENST00000637833.1	-	96160691,96165306,96171826	96163248,96165431,96172126	0.600000
stomach_male_adult_37_years	chr6	79631242	79631329	79631302	+	High_confidence	484	490	1633	84.849673	7.183901	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.962033
stomach_male_adult_37_years	chr5	78388866	78388896	78388895	+	RAMPAGE_only	4	4	10	0.519594	3.169925	chr5	78388798	78388903	LINE|CR1|L3	-	chr5	78360804	78416588	SCAMP1|ENST00000510030.2	+	78360804,78388836,78415519,78416540	78361056,78388914,78415618,78416588	0.500000
stomach_male_adult_37_years	chr14	21360437	21360490	21360437	-	RAMPAGE_only	4	4	25	1.298985	4.418296	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351471	21384266	SUPT16H|ENST00000216297.6	-	21351471,21353487,21353702,21354410,21357196,21357926,21358314,21359483,21360414,21360845,21361077,21362196,21362793,21363033,21363232,21363437,21364826,21365069,21366438,21368268,21369203,21369749,21370335,21371873,21373337,21383861	21352818,21353565,21353832,21354540,21357366,21358002,21358427,21359609,21360533,21360972,21361213,21362324,21362947,21363149,21363328,21363503,21364939,21365143,21366529,21368441,21369355,21369896,21370488,21372044,21373430,21384266	0.920000
stomach_male_adult_37_years	chr3	189121331	189121347	189121346	+	RAMPAGE_only	5	6	16	0.831350	3.375000	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.750000
stomach_male_adult_37_years	chr7	10941130	10941142	10941130	+	RAMPAGE_only	3	3	7	0.363716	2.584963	chr7	10941109	10941301	LINE|L2|L2b	-	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.857143
stomach_male_adult_37_years	chr4	158172987	158173025	158173024	-	High_confidence	22	24	42	2.182294	4.898153	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158125099	158173043	STRG.40605.3	-	158125099,158155610,158170465,158172867	158127614,158155825,158171599,158173043	0.952381
stomach_male_adult_37_years	chr2	69810073	69810074	69810073	+	RAMPAGE_only	5	5	8	0.415675	3.000000	chr2	69810076	69810388	SINE|Alu|AluSx	+	chr2	69720790	69825774	ANXA4|ENST00000477632.5	+	69720790,69781519,69788053,69804532,69806384,69807905,69812652,69816100,69818598,69819279,69820698,69825455	69720871,69781574,69788141,69804627,69806498,69810673,69812709,69816194,69818694,69819338,69820821,69825774	0.750000
stomach_male_adult_37_years	chr1	176162895	176162896	176162895	-	RAMPAGE_only	4	5	6	0.311756	2.584963	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.500000
stomach_male_adult_37_years	chr1	89272843	89272883	89272859	-	High_confidence	23	26	181	9.404648	6.004896	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.955801
stomach_male_adult_37_years	chr5	154287420	154287470	154287469	+	High_confidence	25	26	49	2.546010	4.628376	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	0.857143
stomach_male_adult_37_years	chr3	46606947	46606950	46606947	-	RAMPAGE_only	8	8	16	0.831350	3.327820	chr3	46606755	46606914	LTR|ERVL-MaLR|MLT1L	-	chr3	46518348	46580099	LRRC2|ENST00000296144.3	-	46518348,46521521,46527425,46529904,46532772,46539044,46545045,46551466,46579936	46519063,46521658,46527581,46530050,46532909,46539201,46545253,46551610,46580099	0.500000
stomach_male_adult_37_years	chr11	59841022	59841023	59841022	-	RAMPAGE_only	5	6	8	0.415675	2.750000	chr11	59840939	59841100	SINE|MIR|MIR1_Amn	-	chr11	59829274	59845499	GIF|ENST00000525058.5	-	59829274,59831677,59835807,59837173,59841142,59842442,59843027,59843878,59845260	59829545,59831796,59836009,59837351,59841324,59842583,59843141,59844055,59845499	0.500000
stomach_male_adult_37_years	chr14	91462209	91462247	91462209	-	High_confidence	10	14	33	1.714660	3.876839	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.757576
stomach_male_adult_37_years	chr1	23417904	23418002	23417904	-	RAMPAGE_only	12	12	105	5.455735	5.905733	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	1.000000
stomach_male_adult_37_years	chr1	19344373	19344410	19344388	-	RAMPAGE_only	12	12	43	2.234253	4.545467	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.906977
stomach_male_adult_37_years	chr8	2727243	2727272	2727271	+	High_confidence	6	6	10	0.519594	3.121928	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	1.000000
stomach_male_adult_37_years	chr21	29077476	29077501	29077486	+	High_confidence	30	32	70	3.637157	5.572009	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.500000
stomach_male_adult_37_years	chr2	68946005	68946328	68946097	-	RAMPAGE_only	56	57	486	25.252260	6.466181	chr2	68946067	68946151	LINE|L2|L2c	+	chr2	68945296	68952880	GKN2|ENST00000481498.1	-	68945296,68947146,68950125,68950701,68952849	68946460,68947257,68950263,68950755,68952880	0.965021
stomach_male_adult_37_years	chr3	9986887	9986905	9986904	+	High_confidence	4	4	13	0.675472	3.180833	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986910	10005244	EMC3-AS1|ENST00000326237.3	+	9986910,10002716	9987264,10005244	0.692308
stomach_male_adult_37_years	chr2	149146175	149146217	149146175	+	High_confidence	15	18	27	1.402903	4.310443	chr2	149146103	149146596	LINE|L2|L2b	-	chr2	149145691	149146582	STRG.19004.1	+	149145691	149146582	0.925926
stomach_male_adult_37_years	chr1	223759069	223759087	223759086	+	High_confidence	5	7	10	0.519594	3.169925	chr1	223759082	223759137	SINE|Alu|AluJr	-	chr1	223758225	223776018	CAPN2|ENST00000487223.5	+	223758225,223761580,223762185,223764149,223766366,223769840,223770446,223771808,223772180,223774833	223759481,223761617,223762251,223764207,223766431,223769909,223770525,223771925,223772239,223776018	0.800000
stomach_male_adult_37_years	chr11	65434041	65434631	65434552	+	RAMPAGE_only	52	53	971	50.452561	7.322239	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998970
stomach_male_adult_37_years	chr19	282763	282778	282777	-	RAMPAGE_only	4	4	10	0.519594	2.725481	chr19	282643	282733	SINE|MIR|MIR1_Amn	-	chr19	281045	288537	PLPP2|ENST00000621795.1	-	281045,282133,282751	281537,282310,288537	0.900000
stomach_male_adult_37_years	chr7	128622497	128622517	128622497	+	RAMPAGE_only	3	3	11	0.571553	3.321928	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128607796	128639195	STRG.64616.5	+	128607796,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294,128629393,128631679,128638773	128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626530,128629458,128631869,128639195	0.545455
stomach_male_adult_37_years	chr6	143849991	143850013	143849991	+	RAMPAGE_only	2	2	8	0.415675	2.750000	chr6	143849659	143850038	LTR|ERVL-MaLR|MLT1C	-	chr6	143843370	143863806	LTV1|NM_032860.3	+	143843370,143844485,143846050,143850130,143857302,143857751,143860425,143862103,143862843,143863085,143863416	143843480,143844617,143846224,143850218,143857444,143858007,143860553,143862243,143862896,143863286,143863806	0.750000
stomach_male_adult_37_years	chr1	235865164	235865186	235865164	-	RAMPAGE_only	2	2	9	0.467634	3.000000	chr1	235864944	235865509	LINE|L2|L2a	+	chr1	235829408	235866876	LYST|ENST00000468626.2	-	235829408,235833577,235866842	235830424,235833667,235866876	0.666667
stomach_male_adult_37_years	chr10	94683450	94683484	94683483	+	High_confidence	170	170	383	19.900444	6.161777	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_000772.2	+	94683493,94687769,94688124,94694916,94706783,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94706960,94720537,94724533,94733438,94736190	0.984334
stomach_male_adult_37_years	chr1	169124663	169124703	169124700	+	RAMPAGE_only	3	3	14	0.727431	3.392747	chr1	169124508	169124714	SINE|MIR|MIRb	+	chr1	169107906	169127399	ATP1B1|ENST00000494797.1	+	169107906,169111369,169124883,169127223	169108163,169111498,169125039,169127399	0.857143
stomach_male_adult_37_years	chr9	129488726	129488857	129488856	+	High_confidence	91	91	698	36.267649	6.138147	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.919771
stomach_male_adult_37_years	chr1	223628669	223628684	223628669	-	High_confidence	4	5	12	0.623513	3.459432	chr1	223628502	223628621	DNA|hAT-Charlie|MER5A	-	chr1	223622621	223628705	CAPN8|ENST00000465098.1	-	223622621,223625804,223626988,223628008,223628661	223622900,223625888,223627157,223628142,223628705	0.583333
stomach_male_adult_37_years	chr10	88667589	88667676	88667634	+	RAMPAGE_only	3078	3449	14764	767.128333	6.202398	chr10	88667660	88667752	DNA|hAT-Ac|OldhAT1	+	chr10	88664457	88678814	LIPF|ENST00000355843.2	+	88664457,88665478,88667286,88667568,88668656,88669836,88671828,88673587,88675585,88676208,88678444	88664491,88665559,88667402,88667686,88668756,88669946,88671965,88673734,88675657,88676280,88678814	0.970536
stomach_male_adult_37_years	chr19	11196212	11196223	11196218	-	High_confidence	4	4	14	0.727431	3.392747	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.857143
stomach_male_adult_37_years	chr2	128173731	128173738	128173731	+	RAMPAGE_only	2	3	7	0.363716	2.584963	chr2	128173483	128173742	LINE|L1|L1ME1	-	chr2	128172266	128176894	STRG.18098.4	+	128172266,128173780,128174772,128176813	128172762,128173939,128174858,128176894	0.714286
stomach_male_adult_37_years	chr17	62520811	62520841	62520840	+	RAMPAGE_only	5	5	16	0.831350	3.750000	chr17	62520890	62521168	SINE|Alu|AluJr	+	chr17	62481120	62606241	TLK2|ENST00000581041.5	+	62481120,62520772,62522203,62523133,62536169,62553662,62560015,62565000,62573214,62576708,62578476,62580110,62586134,62596584,62600650,62602041,62606129	62481206,62520844,62522273,62523177,62536337,62553755,62560126,62565137,62573367,62576775,62578574,62580192,62586226,62596674,62600820,62602180,62606241	0.625000
stomach_male_adult_37_years	chr17	4143196	4143215	4143199	+	High_confidence	54	54	133	6.910598	5.889808	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.954887
stomach_male_adult_37_years	chr4	153292924	153292925	153292924	+	RAMPAGE_only	6	6	8	0.415675	2.807355	chr4	153292828	153292946	SINE|MIR|MIRb	+	chr4	153257409	153294370	TRIM2|ENST00000433687.1	+	153257409,153275892,153292981,153294304	153257607,153276130,153293133,153294370	0.500000
stomach_male_adult_37_years	chr12	132782313	132782347	132782328	-	RAMPAGE_only	3	3	16	0.831350	3.875000	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132772609	132788508	STRG.98380.5	-	132772609,132774156,132775140,132776633,132776957,132777665,132780797,132782295,132784163,132786338,132786692,132788393	132773294,132774320,132775305,132776756,132777090,132777805,132780914,132782493,132784307,132786555,132786787,132788508	1.000000
stomach_male_adult_37_years	chr17	19747944	19747956	19747944	-	High_confidence	2	2	7	0.363716	2.584963	chr17	19747778	19747988	SINE|MIR|MIRb	-	chr17	19747335	19748799	STRG.115464.17	-	19747335,19748798	19748216,19748799	0.714286
stomach_male_adult_37_years	chr17	31993982	31993994	31993993	+	High_confidence	8	8	13	0.675472	3.546594	chr17	31994036	31994094	LINE|L1|L1MA2	+	chr17	31994352	31999376	SUZ12|ENST00000578106.1	+	31994352,31995563,31996797,31998657	31994721,31995762,31996877,31999376	1.000000
stomach_male_adult_37_years	chr3	135965670	135965749	135965723	+	High_confidence	25	37	237	12.314374	6.246260	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.978903
stomach_male_adult_37_years	chr11	107441577	107441601	107441590	-	RAMPAGE_only	6	6	24	1.247025	4.262692	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	0.958333
stomach_male_adult_37_years	chrX	16712889	16712923	16712889	-	High_confidence	6	6	28	1.454863	4.623517	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.714286
stomach_male_adult_37_years	chr19	9658018	9658046	9658018	-	RAMPAGE_only	1	1	7	0.363716	2.584963	chr19	9657864	9657989	SINE|Alu|FLAM_C	-	chr19	9652278	9675044	ZNF562|ENST00000453372.6	-	9652278,9656546,9658008,9659378,9660719,9675014	9653881,9656653,9658135,9659467,9660874,9675044	0.857143
stomach_male_adult_37_years	chr5	66690209	66690223	66690222	+	RAMPAGE_only	7	7	17	0.883310	3.452820	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66736801	66900006	STRG.43720.1	+	66736801,66759708,66788669,66899950	66736821,66759862,66788794,66900006	0.588235
stomach_male_adult_37_years	chr16	67571188	67571206	67571205	+	High_confidence	8	8	24	1.247025	3.970176	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.916667
stomach_male_adult_37_years	chr9	113375504	113375535	113375504	-	High_confidence	7	7	14	0.727431	3.546594	chr9	113375358	113375529	SINE|MIR|MIR3	-	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	0.857143
stomach_male_adult_37_years	chr19	46350849	46350851	46350849	+	RAMPAGE_only	13	15	20	1.039188	3.326360	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.900000
stomach_male_adult_37_years	chr16	8842153	8842175	8842153	+	High_confidence	5	5	13	0.675472	3.546594	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	1.000000
stomach_male_adult_37_years	chr20	50267458	50267488	50267477	+	High_confidence	2	3	9	0.467634	3.000000	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.888889
stomach_male_adult_37_years	chr17	4610469	4610521	4610520	+	High_confidence	5	5	14	0.727431	3.039149	chr17	4610403	4610704	SINE|Alu|AluJb	+	chr17	4610448	4617650	LINC01996|ENST00000573270.1	+	4610448,4616762	4610833,4617650	0.857143
stomach_male_adult_37_years	chr5	160412454	160412478	160412454	-	RAMPAGE_only	4	4	12	0.623513	3.459432	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160406348	160408421	SLU7|ENST00000520841.1	-	160406348,160407475,160407745,160407970,160408328	160406629,160407615,160407813,160408068,160408421	0.666667
stomach_male_adult_37_years	chr9	20658342	20658349	20658346	+	High_confidence	7	9	29	1.506822	3.878783	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.758621
stomach_male_adult_37_years	chr17	56904401	56904426	56904401	-	High_confidence	3	4	15	0.779391	3.467720	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.666667
stomach_male_adult_37_years	chr6	47143220	47143262	47143221	-	High_confidence	206	290	679	35.280421	6.481309	chr6	47143213	47143498	SINE|Alu|AluSx	-	chr6	47143028	47143335	STRG.51957.1	-	47143028	47143335	0.936672
stomach_male_adult_37_years	chr4	119217796	119217822	119217796	+	RAMPAGE_only	2	2	11	0.571553	3.095795	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212586	119221495	USP53|ENST00000514665.1	+	119212586,119217549	119212873,119221495	1.000000
stomach_male_adult_37_years	chr5	133089677	133089678	133089677	+	RAMPAGE_only	27	28	34	1.766619	4.734522	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
stomach_male_adult_37_years	chr12	66249594	66249605	66249597	+	RAMPAGE_only	3	3	10	0.519594	3.169925	chr12	66249493	66249977	LTR|ERVL-MaLR|MLT1D	-	chr12	66244880	66254727	STRG.95591.2	+	66244880,66247694	66245262,66254727	0.900000
stomach_male_adult_37_years	chr5	134612956	134613113	134613031	-	High_confidence	58	59	413	21.459225	6.112137	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.917676
stomach_male_adult_37_years	chr22	37755641	37755658	37755653	+	RAMPAGE_only	6	6	29	1.506822	4.375222	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	0.758621
stomach_male_adult_37_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	21	23	26	1.350944	3.918296	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.807692
stomach_male_adult_37_years	chr17	20227582	20227589	20227588	+	High_confidence	4	4	8	0.415675	2.500000	chr17	20227633	20227880	SINE|Alu|AluSx1	+	chr17	20227439	20238935	STRG.115523.2	+	20227439,20231757,20232199,20236859	20227620,20231831,20232405,20238935	0.750000
stomach_male_adult_37_years	chr10	99937889	99937915	99937889	+	RAMPAGE_only	2	4	13	0.675472	3.418296	chr10	99937898	99938057	SINE|MIR|MIRc	+	chr10	99927208	99958998	DNMBP-AS1|NR_024130.2	+	99927208,99928159,99955673,99956481,99956788	99927299,99928240,99955832,99956591,99958998	0.538462
stomach_male_adult_37_years	chr8	47997453	47997454	47997453	+	RAMPAGE_only	6	6	9	0.467634	2.947703	chr8	47995253	47998768	LTR|ERV1|HERVFH21-int	-	chr8	48008399	48064708	UBE2V2|ENST00000523111.6	+	48008399,48043032,48049852,48060681	48008470,48043181,48049978,48064708	0.888889
stomach_male_adult_37_years	chr11	60182497	60182548	60182497	-	High_confidence	2	3	13	0.675472	3.584963	chr11	60182383	60182456	SINE|MIR|MIRb	-	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.846154
stomach_male_adult_37_years	chr1	155478036	155478044	155478043	-	RAMPAGE_only	4	5	8	0.415675	2.750000	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155407797	155459962	STRG.7768.6	-	155407797,155415743,155438326,155459796	155408402,155415923,155439068,155459962	1.000000
stomach_male_adult_37_years	chr4	86453176	86453207	86453202	-	High_confidence	22	26	119	6.183167	5.225313	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.882353
stomach_male_adult_37_years	chr3	129256112	129256143	129256142	+	RAMPAGE_only	3	3	12	0.623513	3.459432	chr3	129256170	129256401	DNA|hAT|MamRep38	+	chr3	129257376	129267197	STRG.30948.3	+	129257376,129260332,129263903,129265548,129267023	129257860,129260807,129263999,129265792,129267197	0.916667
stomach_male_adult_37_years	chr21	46256868	46256893	46256892	-	High_confidence	6	7	12	0.623513	3.277613	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.833333
stomach_male_adult_37_years	chr12	88419264	88419279	88419278	-	High_confidence	15	18	42	2.182294	4.753774	chr12	88418975	88419670	LINE|L2|L2a	+	chr12	88418957	88419187	STRG.96320.1	-	88418957	88419187	0.761905
stomach_male_adult_37_years	chr16	19430417	19430494	19430448	+	RAMPAGE_only	12	12	43	2.234253	4.766968	chr16	19430397	19430533	LINE|RTE-X|L4_B_Mam	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	0.976744
stomach_male_adult_37_years	chr11	76978581	76978584	76978581	-	High_confidence	2	3	6	0.311756	2.584963	chr11	76977630	76979181	LTR|ERV1|MER52A	+	chr11	76955416	76978619	AP002498.1|ENST00000530190.1	-	76955416,76958833,76978400	76955585,76959013,76978619	0.500000
stomach_male_adult_37_years	chr22	22336752	22336753	22336752	+	RAMPAGE_only	5	8	8	0.415675	2.750000	chr22	22331689	22336920	LINE|L1|L1PA8	+	chr22	22664437	22759211	STRG.129611.4	+	22664437,22758903	22664518,22759211	0.875000
stomach_male_adult_37_years	chr4	146376776	146376779	146376776	-	RAMPAGE_only	3	3	8	0.415675	2.807355	chr4	146376648	146377238	LTR|ERV1|LTR10C	-	chr4	146256490	146521717	SLC10A7|ENST00000507030.5	-	146256490,146256825,146258691,146283191,146292928,146293929,146305925,146325960,146442782,146503848,146509912,146517037,146521617	146256520,146256936,146258837,146283265,146292980,146294095,146306009,146325996,146442821,146503924,146510049,146517120,146521717	0.500000
stomach_male_adult_37_years	chr1	12572735	12572799	12572735	-	RAMPAGE_only	4	4	20	1.039188	3.932138	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.950000
stomach_male_adult_37_years	chr10	65570517	65570540	65570519	+	High_confidence	6	11	34	1.766619	4.771143	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570535	65585775	LINC01515|ENST00000608678.5	+	65570535,65571424,65572934,65581611,65585484	65570759,65571579,65573056,65581673,65585775	0.500000
stomach_male_adult_37_years	chr2	227534916	227534933	227534916	+	RAMPAGE_only	3	3	13	0.675472	3.418296	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.769231
stomach_male_adult_37_years	chr4	107694271	107694298	107694297	-	High_confidence	6	7	11	0.571553	3.121928	chr4	107694070	107694298	SINE|Alu|AluJo	-	chr4	107687128	107694298	PAPSS1|ENST00000506544.1	-	107687128,107693770	107687177,107694298	0.818182
stomach_male_adult_37_years	chr19	58306086	58306117	58306104	+	High_confidence	7	7	20	1.039188	3.932138	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.600000
stomach_male_adult_37_years	chr7	2242922	2242923	2242922	+	High_confidence	19	19	21	1.091147	4.037401	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.857143
stomach_male_adult_37_years	chr15	57451514	57451576	57451531	+	RAMPAGE_only	11	11	67	3.481279	4.586111	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57437800	57461521	STRG.107645.2	+	57437800,57440376,57442372,57451499,57452140,57453682,57461466	57439601,57440471,57442478,57451601,57452289,57453818,57461521	0.940299
stomach_male_adult_37_years	chr20	18137132	18137176	18137132	+	High_confidence	4	4	16	0.831350	3.773557	chr20	18137136	18137292	SINE|Alu|AluSz	+	chr20	18137854	18143169	PET117|NM_001164811.1	+	18137854,18142207	18138051,18143169	0.937500
stomach_male_adult_37_years	chr4	851139	851140	851139	-	High_confidence	11	11	15	0.779391	3.378783	chr4	851102	851393	SINE|Alu|AluJb	-	chr4	849275	851673	GAK|ENST00000502799.1	-	849275,849891	849774,851673	0.933333
stomach_male_adult_37_years	chr15	57402037	57402038	57402037	+	RAMPAGE_only	7	7	7	0.363716	2.807355	chr15	57402062	57402472	LTR|ERVL-MaLR|MSTB	+	chr15	57421065	57440729	STRG.107645.3	+	57421065,57437984,57440376	57421250,57439601,57440729	0.714286
stomach_male_adult_37_years	chr8	53523874	53523908	53523890	-	High_confidence	2	2	10	0.519594	3.169925	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.900000
stomach_male_adult_37_years	chr20	37297344	37297345	37297344	+	High_confidence	5	6	8	0.415675	2.750000	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
stomach_male_adult_37_years	chr20	37382673	37382700	37382699	+	High_confidence	13	14	20	1.039188	3.984184	chr20	37382563	37382753	SINE|MIR|MIRb	-	chr20	37382603	37405432	SRC|ENST00000358208.8	+	37382603,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.750000
stomach_male_adult_37_years	chr7	7566514	7566534	7566514	-	High_confidence	89	98	376	19.536728	7.360959	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7552461	7566996	AC004982.2|ENST00000609497.5	-	7552461,7555155,7565913	7552922,7555189,7566996	0.882979
stomach_male_adult_37_years	chr7	99659194	99659402	99659357	-	RAMPAGE_only	46	46	328	17.042678	6.864803	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99658832	99663582	CYP3A5|ENST00000473347.1	-	99658832,99662815	99660659,99663582	0.652439
stomach_male_adult_37_years	chr15	45107584	45107596	45107595	-	RAMPAGE_only	8	8	16	0.831350	3.506891	chr15	45107561	45107878	SINE|Alu|AluSz	+	chr15	45092812	45108615	STRG.107132.8	-	45092812,45094562,45094935,45095436,45097237,45097613,45098008,45099382,45099661,45100049,45100754,45101204,45103959,45104139,45105642,45106124,45106527,45106831,45107344,45108046	45094272,45094691,45095091,45096060,45097391,45097741,45098058,45099538,45099892,45100228,45100838,45101989,45104053,45104365,45105828,45106327,45106641,45106969,45107463,45108615	0.812500
stomach_male_adult_37_years	chr5	147839192	147839240	147839194	-	High_confidence	24	46	116	6.027288	6.116180	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824571	147839227	STRG.47999.1	-	147824571,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839227	0.637931
stomach_male_adult_37_years	chr10	103890256	103890286	103890285	-	RAMPAGE_only	11	11	37	1.922497	4.343289	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103917669	STN1|ENST00000369764.1	-	103882554,103889071,103892129,103897547,103898876,103900061,103905090,103910526,103917461	103882841,103889144,103892252,103897719,103899000,103900223,103905156,103910622,103917669	0.864865
stomach_male_adult_37_years	chr9	39809843	39809865	39809858	-	High_confidence	9	12	32	1.662700	4.386569	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.687500
stomach_male_adult_37_years	chr2	233012637	233012663	233012637	+	High_confidence	8	8	23	1.195066	3.844233	chr2	233012609	233012781	DNA|hAT-Tip100|MER45A	+	chr2	233012613	233015885	AC106876.1|ENST00000409905.1	+	233012613,233013139,233015706	233012969,233013247,233015885	0.913043
stomach_male_adult_37_years	chr17	42805393	42805394	42805393	+	High_confidence	32	32	32	1.662700	4.812500	chr17	42805186	42805689	LINE|L2|L2c	-	chr17	42805403	42811587	CNTD1|ENST00000315066.5	+	42805403,42805721,42806673,42807767,42809364	42805432,42805884,42806818,42807864,42811587	0.812500
stomach_male_adult_37_years	chr11	46274411	46274428	46274422	-	High_confidence	11	11	32	1.662700	4.348394	chr11	46274366	46274400	SINE|MIR|MIR1_Amn	-	chr11	46256354	46274547	LINC02489|ENST00000527239.1	-	46256354,46274380	46256541,46274547	0.718750
stomach_male_adult_37_years	chr17	42136477	42136504	42136477	-	High_confidence	5	6	21	1.091147	4.121928	chr17	42136440	42136680	SINE|MIR|MIRb	+	chr17	42128691	42136484	RAB5C|ENST00000550504.5	-	42128691,42130336,42136264	42128800,42130590,42136484	0.809524
stomach_male_adult_37_years	chr11	3477038	3477068	3477038	-	High_confidence	19	24	139	7.222354	5.902585	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3476062	3476733	STRG.85728.1	-	3476062	3476733	0.870504
stomach_male_adult_37_years	chr9	94640260	94640285	94640284	-	High_confidence	5	6	15	0.779391	3.640224	chr9	94640267	94640989	LINE|L2|L2a	-	chr9	94603132	94640249	FBP1|NM_001127628.1	-	94603132,94605456,94606814,94609920,94617767,94620328,94639140,94640043	94603572,94605576,94606952,94610061,94617860,94620491,94639334,94640249	0.733333
stomach_male_adult_37_years	chr19	55676628	55676642	55676628	+	High_confidence	11	14	44	2.286213	4.469999	chr19	55676523	55676713	SINE|MIR|MIRb	-	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.954545
stomach_male_adult_37_years	chr1	162759975	162759979	162759975	+	RAMPAGE_only	3	3	7	0.363716	2.521641	chr1	162760014	162760180	SINE|MIR|MIR3	+	chr1	162632469	162780421	DDR2|ENST00000367921.7	+	162632469,162655210,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162780421	1.000000
stomach_male_adult_37_years	chr13	30376944	30376965	30376953	-	High_confidence	14	15	57	2.961685	5.071913	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30363168	30376923	STRG.98899.1	-	30363168,30372284,30375466,30376826	30363226,30372374,30375776,30376923	0.701754
stomach_male_adult_37_years	chr1	246410203	246410204	246410203	-	RAMPAGE_only	5	5	8	0.415675	2.500000	chr1	246408995	246411180	LINE|L1|L1PA4	-	chr1	246239785	246241049	STRG.12288.1	-	246239785	246241049	0.750000
stomach_male_adult_37_years	chr1	97904636	97904676	97904675	-	RAMPAGE_only	3	3	11	0.571553	3.277613	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97515737	97921009	STRG.5653.1	-	97515737,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921009	0.727273
stomach_male_adult_37_years	chr2	143247332	143247353	143247332	+	RAMPAGE_only	3	3	7	0.363716	2.584963	chr2	143246994	143247508	LTR|ERVL|LTR32	+	chr2	143129329	143768352	ARHGAP15|NM_018460.3	+	143129329,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.571429
stomach_male_adult_37_years	chr4	2867798	2867851	2867814	+	High_confidence	13	15	73	3.793035	5.562777	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.945205
stomach_male_adult_37_years	chr5	140697946	140697994	140697966	+	High_confidence	6	6	18	0.935269	3.734522	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140698679	140704502	ZMAT2|ENST00000519913.6	+	140698679,140700818,140702005,140703917,140704425	140698831,140700912,140702129,140703991,140704502	0.611111
stomach_male_adult_37_years	chr1	45005805	45005860	45005805	-	High_confidence	7	7	41	2.130335	4.753226	chr1	45004848	45005768	LINE|L2|L2c	-	chr1	45002539	45005588	HECTD3|ENST00000486132.5	-	45002539,45003668,45003854,45004059,45004247,45004599	45003576,45003740,45003936,45004134,45004377,45005588	0.926829
stomach_male_adult_37_years	chr6	113873326	113873347	113873326	-	High_confidence	14	14	61	3.169522	4.643716	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.967213
stomach_male_adult_37_years	chr2	232816727	232816766	232816731	+	RAMPAGE_only	12	17	48	2.494050	4.941934	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.895833
stomach_male_adult_37_years	chr11	12249213	12249224	12249213	+	RAMPAGE_only	4	4	10	0.519594	2.725481	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.500000
stomach_male_adult_37_years	chr20	19757040	19757064	19757042	+	High_confidence	8	10	18	0.935269	4.058814	chr20	19756795	19757048	LINE|L2|L2a	+	chr20	19757178	19890392	STRG.126206.3	+	19757178,19799621,19889565	19757214,19799747,19890392	0.555556
stomach_male_adult_37_years	chrX	111718188	111718228	111718227	+	High_confidence	3	3	8	0.415675	2.750000	chrX	111718150	111718232	LINE|L2|L2	-	chrX	111717878	111728270	ALG13|ENST00000623622.1	+	111717878,111718111,111720094,111723797,111724933,111726808,111727331,111727613,111728184	111717927,111718274,111720170,111723898,111725061,111727055,111727445,111727770,111728270	0.750000
stomach_male_adult_37_years	chr4	185620084	185620126	185620125	-	RAMPAGE_only	8	9	26	1.350944	3.261028	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.923077
stomach_male_adult_37_years	chr1	1655395	1655410	1655409	-	RAMPAGE_only	42	49	89	4.624385	5.856270	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.629213
stomach_male_adult_37_years	chr1	151369315	151369331	151369320	-	RAMPAGE_only	3	3	13	0.675472	3.418296	chr1	151369225	151369333	DNA|hAT-Tip100|MER91A	-	chr1	151365671	151372683	SELENBP1|ENST00000458566.5	-	151365671,151365767,151366274,151366721,151368198,151369003,151369441,151369712,151372637	151365684,151365846,151366453,151366904,151368319,151369189,151369506,151369769,151372683	0.923077
stomach_male_adult_37_years	chr19	15682212	15682303	15682212	+	High_confidence	6	6	28	1.454863	4.623517	chr19	15682110	15682226	SINE|MIR|MIR3	-	chr19	15681500	15697143	CYP4F12|ENST00000546608.1	+	15681500,15683492,15685067,15695935,15696160,15696907	15682514,15684882,15685197,15696069,15696512,15697143	0.750000
stomach_male_adult_37_years	chr12	119179290	119179309	119179290	+	High_confidence	2	2	11	0.571553	2.663533	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	1.000000
stomach_male_adult_37_years	chr3	160383507	160383532	160383531	-	High_confidence	4	4	8	0.415675	2.521641	chr3	160383467	160383661	DNA|hAT-Charlie|MER5C1	-	chr3	160256991	160383656	IFT80|ENST00000483465.5	-	160256991,160268412,160277305,160277580,160279192,160280666,160282477,160285803,160300882,160303914,160307662,160319759,160356012,160357488,160366042,160375811,160377429,160381502,160383436	160258635,160268536,160277478,160277670,160279364,160280814,160282613,160285868,160301046,160303989,160307781,160319939,160356150,160357578,160366152,160375880,160377540,160381718,160383656	0.625000
stomach_male_adult_37_years	chr7	101217550	101217595	101217580	-	High_confidence	3	5	16	0.831350	3.773557	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.937500
stomach_male_adult_37_years	chr16	2759931	2760066	2760017	+	High_confidence	12	12	114	5.923370	5.443446	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	0.982456
stomach_male_adult_37_years	chr18	57761873	57761928	57761898	-	RAMPAGE_only	3	3	20	1.039188	3.984184	chr18	57761672	57761967	SINE|Alu|AluSc	+	chr18	57669422	57731754	ATP8B1|ENST00000648467.1	-	57669422,57671467,57674833,57684035,57685071,57688298,57691806,57694581,57695170,57695449,57697617,57697794,57701038,57701214,57706489,57731626	57669482,57671580,57675054,57684192,57685115,57688507,57691997,57694670,57695329,57695532,57697688,57697867,57701100,57701313,57706587,57731754	0.850000
stomach_male_adult_37_years	chr8	53523965	53523997	53523965	-	High_confidence	3	4	13	0.675472	3.392747	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.923077
stomach_male_adult_37_years	chr5	140700445	140700452	140700445	+	High_confidence	569	676	1064	55.284784	5.872429	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.980263
stomach_male_adult_37_years	chr1	222737198	222737290	222737289	+	High_confidence	177	192	704	36.579406	7.710433	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.571023
stomach_male_adult_37_years	chr17	10802394	10802395	10802394	+	RAMPAGE_only	6	6	8	0.415675	2.807355	chr17	10802319	10802484	SINE|MIR|MIRb	-	chr17	10844673	10880895	AC015908.2|ENST00000645807.1	+	10844673,10847891,10878369,10880471	10844964,10848045,10878524,10880895	0.625000
stomach_male_adult_37_years	chr17	64764526	64764551	64764526	-	RAMPAGE_only	3	3	8	0.415675	2.750000	chr17	64764423	64764603	SINE|Alu|AluSx1	+	chr17	64761911	64762710	BPTFP1|ENST00000579209.1	-	64761911,64762354	64762047,64762710	1.000000
stomach_male_adult_37_years	chr6	56785867	56785876	56785867	-	High_confidence	3	3	6	0.311756	2.584963	chr6	56779724	56785868	LINE|L1|L1PA3	-	chr6	56670674	56785879	DST|ENST00000522538.5	-	56670674,56699652,56701887,56704279,56735227,56785770	56670807,56699745,56701965,56704369,56735289,56785879	0.666667
stomach_male_adult_37_years	chr1	209651122	209651143	209651135	-	High_confidence	3	3	11	0.571553	3.277613	chr1	209651125	209651277	SINE|MIR|MIR3	+	chr1	209614869	209651334	LAMB3|NM_001017402.1	-	209614869,209616470,209617409,209617906,209618451,209622535,209622981,209623504,209623839,209625647,209626866,209627382,209628034,209629736,209630614,209632582,209633069,209634446,209637907,209638533,209649963,209650916	209615407,209616624,209617586,209618048,209618659,209622680,209623179,209623725,209624000,209626026,209626978,209627579,209628190,209629925,209630735,209632776,209633133,209634638,209637981,209638648,209650118,209651334	0.909091
stomach_male_adult_37_years	chr10	80176114	80176149	80176123	-	RAMPAGE_only	4	4	18	0.935269	3.683542	chr10	80176083	80176485	LINE|L1|L1ME4b	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	1.000000
stomach_male_adult_37_years	chr11	65430775	65430816	65430775	+	RAMPAGE_only	82	86	215	11.171267	5.033529	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
stomach_male_adult_37_years	chr11	66351949	66351955	66351954	+	RAMPAGE_only	6	6	12	0.623513	3.277613	chr11	66351897	66352201	SINE|Alu|AluSz	-	chr11	66360162	66364190	AP001107.9|ENST00000649789.1	+	66360162,66363268	66360744,66364190	0.500000
stomach_male_adult_37_years	chr3	194486602	194486615	194486602	-	High_confidence	2	2	10	0.519594	3.121928	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194459888	194486659	ATP13A3|ENST00000457986.5	-	194459888,194460657,194462139,194485793,194486565	194459971,194460831,194462236,194485835,194486659	0.700000
stomach_male_adult_37_years	chr11	72758533	72758599	72758552	-	High_confidence	20	31	73	3.793035	5.242228	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754862	72757939	STARD10|ENST00000543089.1	-	72754862,72755700,72757766	72755142,72755753,72757939	0.534247
stomach_male_adult_37_years	chr19	55677104	55677171	55677121	+	High_confidence	7	10	33	1.714660	4.559546	chr19	55677165	55677362	SINE|MIR|MIR	+	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.969697
stomach_male_adult_37_years	chr2	233691669	233691710	233691709	+	RAMPAGE_only	21	21	83	4.312629	5.949350	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233682367	233692347	UGT1A7|ENST00000485022.1	+	233682367,233689898,233690519	233682792,233689904,233692347	0.554217
stomach_male_adult_37_years	chr9	89479889	89479890	89479889	-	High_confidence	106	106	115	5.975329	5.057167	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	0.886957
stomach_male_adult_37_years	chr12	123260904	123260910	123260904	-	High_confidence	5	5	10	0.519594	2.725481	chr12	123260632	123260962	SINE|Alu|AluJb	+	chr12	123258976	123261219	AC068768.1|ENST00000544890.1	-	123258976,123260273,123260825	123259148,123260503,123261219	0.800000
stomach_male_adult_37_years	chr21	37084048	37084049	37084048	+	High_confidence	4	4	6	0.311756	2.584963	chr21	37083879	37084118	DNA|hAT-Charlie|MER113B	+	chr21	37083625	37093402	TTC3|ENST00000484047.5	+	37083625,37087246,37087832,37088798,37090232,37091292,37093308	37084331,37087401,37088346,37088886,37090286,37091626,37093402	1.000000
stomach_male_adult_37_years	chr8	102299080	102299098	102299080	-	RAMPAGE_only	3	3	7	0.363716	2.584963	chr8	102299077	102299124	LTR|ERV1|MER66B	+	chr8	102272501	102305257	STRG.70340.4	-	102272501,102275520,102275707,102276971,102278825,102279035,102280393,102281288,102285126,102285512,102286359,102287432,102288154,102289452,102293604,102293954,102294981,102295203,102295413,102295635,102296892,102297457,102298391,102298847,102299451,102299999,102302270,102304042,102305084	102272772,102275619,102275828,102277192,102278939,102279208,102280467,102281519,102285338,102285781,102286617,102287564,102288266,102289576,102293844,102294115,102295111,102295330,102295532,102295782,102296984,102297606,102298489,102298971,102299547,102300151,102302481,102304169,102305257	0.857143
stomach_male_adult_37_years	chr2	196176327	196176331	196176330	-	High_confidence	5	7	10	0.519594	2.921928	chr2	196176299	196176378	LINE|RTE-BovB|MamRTE1	-	chr2	196156571	196176327	STK17B|ENST00000420683.1	-	196156571,196163261,196174248,196176225	196156651,196163427,196174407,196176327	0.800000
stomach_male_adult_37_years	chr13	79393564	79393594	79393587	-	RAMPAGE_only	7	7	25	1.298985	4.168296	chr13	79393527	79394632	LTR|ERV1|MER50-int	+	chr13	79319953	79405788	RBM26|ENST00000267229.11	-	79319953,79322348,79334343,79337101,79341122,79342663,79344247,79344668,79354438,79355219,79358273,79359574,79365577,79366054,79366632,79368729,79370944,79371841,79377378,79378788,79405703	79320710,79322462,79334430,79337302,79341227,79342831,79344322,79344794,79354561,79355384,79358433,79359686,79365718,79366195,79366872,79368990,79371162,79371930,79377515,79378907,79405788	0.840000
stomach_male_adult_37_years	chr1	1858770	1858772	1858770	-	RAMPAGE_only	3	4	7	0.363716	2.584963	chr1	1858666	1859016	DNA|hAT-Charlie|MER119	+	chr1	1804525	1832285	GNB1|ENST00000437146.1	-	1804525,1806474,1815755,1817836,1825396,1832231	1804581,1806538,1815862,1817875,1825499,1832285	0.857143
stomach_male_adult_37_years	chr1	172165645	172165646	172165645	+	RAMPAGE_only	90	90	121	6.287085	5.858692	chr1	172165409	172165862	LINE|L2|L2c	+	chr1	172379017	172418466	DNM3|ENST00000485254.2	+	172379017,172387132,172388572,172418280	172379182,172387359,172388809,172418466	0.611570
stomach_male_adult_37_years	chr14	91215721	91215722	91215721	+	High_confidence	4	4	7	0.363716	2.807355	chr14	91215747	91215868	SINE|MIR|MIRb	+	chr14	91215856	91224822	DGLUCY|ENST00000523576.1	+	91215856,91223678,91224683	91216460,91223795,91224822	0.714286
stomach_male_adult_37_years	chr4	39544055	39544109	39544055	-	High_confidence	36	36	84	4.364588	5.220846	chr4	39543948	39544368	LTR|ERVK|LTR3B	-	chr4	39539745	39544084	STRG.35688.1	-	39539745,39543823	39539775,39544084	0.595238
stomach_male_adult_37_years	chr19	20423690	20423704	20423703	-	High_confidence	32	41	121	6.287085	5.425845	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20406029	20423712	STRG.123058.2	-	20406029,20408949,20423480	20406132,20409028,20423712	0.611570
stomach_male_adult_37_years	chr3	188884244	188884297	188884244	+	RAMPAGE_only	2	3	17	0.883310	3.969816	chr3	188884141	188884305	SINE|MIR|MIRc	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
stomach_male_adult_37_years	chr14	101823619	101823653	101823652	+	High_confidence	5	5	24	1.247025	4.061482	chr14	101823598	101823757	SINE|MIR|MIRc	-	chr14	101823546	101883562	STRG.105422.6	+	101823546,101856685,101882160,101883256,101883431	101824169,101856885,101882485,101883349,101883562	0.666667
stomach_male_adult_37_years	chr1	239730464	239730473	239730464	-	High_confidence	39	40	58	3.013644	4.907085	chr1	239730338	239730702	LINE|L2|L2c	-	chr1	239707342	239730465	CHRM3-AS2|ENST00000628573.2	-	239707342,239714176,239720138,239727653,239730400	239707760,239714264,239720178,239727808,239730465	0.810345
stomach_male_adult_37_years	chr13	48492655	48492656	48492655	-	High_confidence	5	5	7	0.363716	2.584963	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.571429
stomach_male_adult_37_years	chr4	73144752	73144817	73144770	-	RAMPAGE_only	7	8	24	1.247025	3.767894	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.916667
stomach_male_adult_37_years	chr9	68975832	68975846	68975842	-	High_confidence	9	9	23	1.195066	3.914866	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.695652
stomach_male_adult_37_years	chr1	17005373	17005394	17005393	-	High_confidence	3	3	7	0.363716	2.807355	chr1	17005163	17005347	SINE|MIR|MIR3	-	chr1	17000282	17005395	ATP13A2|ENST00000508222.5	-	17000282,17000399,17002033,17002295,17004331,17004706,17005013,17005373	17000312,17000507,17002103,17002373,17004411,17004821,17005072,17005395	1.000000
stomach_male_adult_37_years	chr22	37582669	37582670	37582669	-	High_confidence	8	10	10	0.519594	3.321928	chr22	37582638	37582732	LINE|RTE-X|L4_A_Mam	+	chr22	37571848	37582616	LGALS2|ENST00000416480.1	-	37571848,37579899,37580223,37582437	37571931,37579985,37580281,37582616	0.600000
stomach_male_adult_37_years	chr19	45524101	45524140	45524130	+	RAMPAGE_only	8	8	27	1.402903	4.578781	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.666667
stomach_male_adult_37_years	chr2	17720951	17720969	17720951	-	RAMPAGE_only	3	3	9	0.467634	2.947703	chr2	17720840	17720910	DNA|TcMar-Mariner|MADE2	-	chr2	17716749	17746412	SMC6|ENST00000381272.5	-	17716749,17717087,17718076,17720939,17721141,17725256,17726388,17731077,17731740,17738220,17741611,17745826	17716905,17717176,17718223,17721038,17721261,17725358,17726469,17731139,17731877,17738326,17741729,17746412	1.000000
stomach_male_adult_37_years	chr15	45108630	45108656	45108630	-	High_confidence	2	3	8	0.415675	2.750000	chr15	45108564	45108772	SINE|MIR|MIR	+	chr15	45092812	45108615	STRG.107132.8	-	45092812,45094562,45094935,45095436,45097237,45097613,45098008,45099382,45099661,45100049,45100754,45101204,45103959,45104139,45105642,45106124,45106527,45106831,45107344,45108046	45094272,45094691,45095091,45096060,45097391,45097741,45098058,45099538,45099892,45100228,45100838,45101989,45104053,45104365,45105828,45106327,45106641,45106969,45107463,45108615	1.000000
stomach_male_adult_37_years	chr11	134467260	134467283	134467264	+	High_confidence	17	17	47	2.442091	4.951147	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134466832	134467958	STRG.91798.1	+	134466832,134467864	134467615,134467958	0.723404
stomach_male_adult_37_years	chr3	37988080	37988135	37988134	+	High_confidence	8	8	39	2.026416	4.714647	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.615385
stomach_male_adult_37_years	chr10	46269605	46269610	46269606	-	High_confidence	5	7	16	0.831350	3.750000	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.812500
stomach_male_adult_37_years	chr11	65433817	65433836	65433817	+	RAMPAGE_only	4	4	10	0.519594	3.169925	chr11	65433746	65433848	LINE|L1|L1PB3	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.900000
stomach_male_adult_37_years	chr1	52913883	52913922	52913883	-	RAMPAGE_only	2	2	11	0.571553	2.921928	chr1	52913587	52913858	LINE|L1|L1MC1	-	chr1	52913419	52921785	ECHDC2|ENST00000542552.1	-	52913419,52917543,52921552	52914095,52917615,52921785	0.636364
stomach_male_adult_37_years	chr12	126772232	126772251	126772237	-	High_confidence	4	4	15	0.779391	3.521641	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126730700	126772262	LINC00944|NR_033878.1	-	126730700,126732342,126746260,126747930,126772078	126730803,126732407,126746332,126748127,126772262	0.800000
stomach_male_adult_37_years	chr8	32927976	32927977	32927976	+	RAMPAGE_only	9	10	13	0.675472	3.251629	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.923077
stomach_male_adult_37_years	chr1	107754761	107754823	107754797	-	RAMPAGE_only	7	7	31	1.610741	4.696132	chr1	107754420	107755105	LINE|L2|L2a	+	chr1	107573168	107785624	VAV3|ENST00000343258.8	-	107573168,107574046,107596211,107602396,107603046,107609930,107617566,107642618,107683487,107688380,107704549,107704959,107748967,107749461,107751116,107755426,107757260,107760783,107765075,107766446,107768440,107770635,107772734,107777230,107779433,107785457	107573372,107574198,107596341,107602484,107603163,107609965,107617632,107642755,107683533,107688406,107704650,107705061,107749077,107749594,107751202,107755513,107757329,107760879,107765175,107766550,107768509,107770728,107772843,107777296,107779492,107785624	0.645161
stomach_male_adult_37_years	chr20	44746222	44746254	44746253	-	High_confidence	6	6	18	0.935269	3.616875	chr20	44746252	44746334	SINE|MIR|MIR3	+	chr20	44711861	44746227	KCNK15-AS1|NR_132377.1	-	44711861,44716624,44737510,44738819,44745964	44711988,44716793,44737570,44738934,44746227	0.611111
stomach_male_adult_37_years	chr17	10843547	10843566	10843547	+	RAMPAGE_only	3	3	11	0.571553	3.121928	chr17	10843349	10843935	LTR|ERV1|LTR36	+	chr17	10844673	10880895	AC015908.2|ENST00000645807.1	+	10844673,10847891,10878369,10880471	10844964,10848045,10878524,10880895	0.545455
stomach_male_adult_37_years	chr4	23762920	23762927	23762926	+	High_confidence	33	41	74	3.844994	5.047202	chr4	23762717	23763262	LTR|ERVL|MLT2A2	+	chr4	23762926	23768625	AC093607.1|ENST00000499715.2	+	23762926,23768318	23763178,23768625	0.864865
stomach_male_adult_37_years	chr15	80059918	80059933	80059918	+	High_confidence	47	50	110	5.715532	5.231833	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.963636
stomach_male_adult_37_years	chr11	2669617	2669665	2669617	-	RAMPAGE_only	4	4	20	1.039188	4.121928	chr11	2669547	2669744	SINE|MIR|MIRb	+	chr11	2608327	2699994	KCNQ1OT1|ENST00000597346.1	-	2608327	2699994	1.000000
stomach_male_adult_37_years	chr9	6251194	6251233	6251194	+	RAMPAGE_only	4	4	13	0.675472	3.188722	chr9	6251008	6251757	DNA|hAT-Charlie|Charlie17b	+	chr9	6241694	6257982	IL33|ENST00000456383.3	+	6241694,6250473,6251139,6253551,6254461,6255967	6241785,6250599,6251265,6253602,6254553,6257982	0.923077
stomach_male_adult_37_years	chr19	58312170	58312184	58312183	+	RAMPAGE_only	3	4	8	0.415675	2.750000	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	1.000000
stomach_male_adult_37_years	chr16	81664306	81664347	81664343	+	RAMPAGE_only	17	18	47	2.442091	5.086504	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.957447
stomach_male_adult_37_years	chr13	60410080	60410081	60410080	+	RAMPAGE_only	11	11	12	0.623513	3.459432	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60397830	60573864	TDRD3|ENST00000648252.1	+	60397830,60400255,60402717,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573615	60398631,60400292,60402815,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573864	0.833333
stomach_male_adult_37_years	chr6	11728645	11728646	11728645	-	High_confidence	5	5	8	0.415675	2.807355	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.625000
stomach_male_adult_37_years	chr13	41047712	41047713	41047712	-	High_confidence	6	7	9	0.467634	3.169925	chr13	41042308	41048414	LINE|L1|L1PA5	-	chr13	41045299	41047952	STRG.99535.1	-	41045299	41047952	1.000000
stomach_male_adult_37_years	chr2	68943707	68944168	68943707	-	RAMPAGE_only	119	127	1270	65.988417	7.121176	chr2	68941107	68944555	LINE|L1|L1PA16	-	chr2	68938799	68949357	STRG.15728.4	-	68938799,68946303,68947146	68944543,68946460,68949357	0.997638
stomach_male_adult_37_years	chr6	3076926	3076952	3076926	+	High_confidence	2	2	10	0.519594	2.947703	chr6	3076851	3076944	SINE|tRNA|LFSINE_Vert	-	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.900000
stomach_male_adult_37_years	chr7	99659509	99659655	99659654	-	RAMPAGE_only	15	15	87	4.520466	5.882603	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99658832	99663582	CYP3A5|ENST00000473347.1	-	99658832,99662815	99660659,99663582	0.873563
stomach_male_adult_37_years	chr14	24423184	24423283	24423282	+	High_confidence	78	81	405	21.043550	6.476411	chr14	24422287	24423820	LINE|L2|L2b	-	chr14	24423385	24439710	STRG.101996.3	+	24423385,24430713,24431462,24432721,24432935,24436071,24436387,24437035	24423476,24430931,24432610,24432852,24433032,24436179,24436489,24439710	0.849383
stomach_male_adult_37_years	chr2	237510067	237510070	237510069	+	High_confidence	26	37	43	2.234253	4.763295	chr2	237509843	237510275	LINE|RTE-X|L4_B_Mam	+	chr2	237510086	237553993	MLPH|ENST00000495439.5	+	237510086,237510988,237518538,237519909,237525600,237527376,237540347,237542566,237546605,237549220,237552336,237553565	237510795,237511101,237518648,237520029,237525805,237527516,237540533,237542659,237546683,237549278,237552437,237553993	0.930233
stomach_male_adult_37_years	chr12	51406531	51406539	51406538	+	RAMPAGE_only	3	3	6	0.311756	2.584963	chr12	51406372	51406645	LINE|L2|L2b	-	chr12	51403162	51497864	SLC4A8|ENST00000604314.5	+	51403162,51440707,51450875,51452123,51453538,51457350,51458558,51459950,51461203,51462309,51463613,51469613,51470391,51471286,51474341,51475044,51485786,51488698,51489699,51493703,51494944,51496986	51403289,51440789,51451022,51452259,51453699,51457539,51458650,51460108,51461291,51462456,51463714,51469788,51470525,51471532,51474447,51475206,51485900,51488860,51489951,51493772,51495118,51497864	0.833333
stomach_male_adult_37_years	chr10	5017999	5018015	5018014	-	High_confidence	26	28	72	3.741076	5.116514	chr10	5017765	5018153	LTR|ERVL-MaLR|MSTA	-	chr10	5006461	5017934	AKR1C2|ENST00000604711.1	-	5006461,5007406,5010343,5017899	5006592,5007506,5010653,5017934	0.763889
stomach_male_adult_37_years	chr1	175177611	175177669	175177611	-	RAMPAGE_only	2	2	9	0.467634	2.725481	chr1	175177563	175177679	SINE|MIR|MIRc	+	chr1	175156986	175166741	KIAA0040|ENST00000619513.1	-	175156986,175166561	175161146,175166741	1.000000
stomach_male_adult_37_years	chr21	41480789	41480803	41480802	-	RAMPAGE_only	6	6	12	0.623513	3.459432	chr21	41480630	41480937	SINE|Alu|AluSx1	-	chr21	41466008	41507982	TMPRSS2|ENST00000458356.5	-	41466008,41467733,41468395,41470647,41471805,41473324,41476576,41479171,41480475,41488393,41489506,41494355,41498118,41507949	41466153,41467886,41468538,41470743,41471981,41473496,41476620,41479282,41480602,41488513,41489593,41494578,41498189,41507982	0.583333
stomach_male_adult_37_years	chr17	60305261	60305262	60305261	-	High_confidence	5	5	8	0.415675	2.521641	chr17	60305106	60305535	LTR|ERVL-MaLR|MSTB	-	chr17	60255144	60304945	STRG.117691.2	-	60255144,60265411,60265975,60269449,60271349,60288522,60294682,60301598,60304906	60255258,60265474,60266091,60269557,60271481,60288682,60294801,60301704,60304945	0.500000
stomach_male_adult_37_years	chr1	153967486	153967512	153967503	+	High_confidence	7	7	35	1.818578	4.256515	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.828571
stomach_male_adult_37_years	chr17	28233986	28234054	28234014	-	RAMPAGE_only	8	8	92	4.780263	5.732747	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.989130
stomach_male_adult_37_years	chr16	53445773	53445789	53445780	+	High_confidence	10	13	37	1.922497	4.650572	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.702703
stomach_male_adult_37_years	chr18	7946878	7946898	7946878	+	High_confidence	32	32	69	3.585197	5.723420	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.681159
stomach_male_adult_37_years	chr1	160537052	160537059	160537055	+	High_confidence	3	4	14	0.727431	3.521641	chr1	160536842	160537065	LTR|ERVL|LTR33A_	+	chr1	160537072	160571458	AL138930.1|ENST00000446952.1	+	160537072,160570938	160537187,160571458	0.642857
stomach_male_adult_37_years	chr1	231422748	231422749	231422748	-	RAMPAGE_only	6	6	7	0.363716	2.584963	chr1	231422714	231422871	SINE|MIR|MIRb	-	chr1	231363750	231425044	EGLN1|ENST00000366641.3	-	231363750,231367568,231370561,231373979,231420997	231366475,231367636,231370698,231374099,231425044	0.857143
stomach_male_adult_37_years	chr3	128626787	128626823	128626810	-	RAMPAGE_only	4	4	18	0.935269	3.947703	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.944444
stomach_male_adult_37_years	chr3	155665115	155665140	155665115	-	RAMPAGE_only	1	1	7	0.363716	2.584963	chr3	155664915	155665290	LTR|ERVL-MaLR|MLT1J2	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	0.857143
stomach_male_adult_37_years	chr6	140898419	140898430	140898429	-	RAMPAGE_only	4	4	11	0.571553	3.459432	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140852924	AL035446.1|ENST00000455011.1	-	140845957,140852818	140846304,140852924	0.545455
stomach_male_adult_37_years	chr8	144106344	144106365	144106356	+	High_confidence	2	4	10	0.519594	2.947703	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.500000
stomach_male_adult_37_years	chr17	56904519	56904560	56904541	-	High_confidence	4	4	12	0.623513	3.251629	chr17	56904513	56905129	LINE|L1|L1ME3C	+	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.583333
stomach_male_adult_37_years	chr5	34244784	34244816	34244815	-	High_confidence	8	9	20	1.039188	3.787144	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.550000
stomach_male_adult_37_years	chr10	32912199	32912221	32912210	-	High_confidence	5	5	12	0.623513	3.188722	chr10	32912176	32918355	LINE|L1|L1PA5	+	chr10	32901563	32912064	ITGB1|ENST00000494395.1	-	32901563,32908367,32911526,32911885	32901635,32908534,32911670,32912064	0.916667
stomach_male_adult_37_years	chr11	71480120	71480132	71480131	+	High_confidence	3	3	6	0.311756	2.584963	chr11	71479919	71480150	LINE|L1|L1MB7	-	chr11	71480148	71490876	NADSYN1|ENST00000526039.6	+	71480148,71480754,71481355,71482000,71482848,71484311,71485541,71490844	71480274,71480879,71481404,71482025,71483017,71484447,71485648,71490876	1.000000
stomach_male_adult_37_years	chr14	101731410	101731414	101731413	+	High_confidence	17	17	28	1.454863	4.351823	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.928571
stomach_male_adult_37_years	chr8	47360804	47360860	47360804	+	High_confidence	4	4	15	0.779391	3.640224	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47440397	SPIDR|ENST00000521918.6	+	47360818,47396375,47407860,47440322	47360949,47396626,47407961,47440397	0.733333
stomach_male_adult_37_years	chr7	134432406	134432458	134432406	-	High_confidence	2	2	18	0.935269	4.087463	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.722222
stomach_male_adult_37_years	chr1	227142956	227143000	227142956	-	RAMPAGE_only	19	20	41	2.130335	5.021928	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.756098
stomach_male_adult_37_years	chr6	33638761	33638778	33638768	+	RAMPAGE_only	4	6	20	1.039188	3.892407	chr6	33638702	33639082	LINE|L2|L2c	-	chr6	33621378	33696574	ITPR3|NM_002224.3	+	33621378,33640483,33655765,33657931,33658669,33659020,33659465,33662527,33662910,33663499,33663737,33664869,33665052,33665834,33667128,33667791,33668514,33668973,33670324,33670670,33671164,33672028,33673590,33674207,33675690,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33683206,33684019,33684356,33684597,33684773,33685358,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33621691,33640554,33655887,33658018,33658828,33659119,33659549,33662674,33663006,33663550,33663880,33664969,33665213,33665976,33667290,33667964,33668634,33669156,33670576,33670815,33671306,33672228,33673720,33674265,33675856,33676932,33677089,33677629,33678543,33678839,33680133,33680454,33680680,33682644,33683397,33684168,33684465,33684688,33684943,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696574	0.700000
stomach_male_adult_37_years	chr19	44725180	44725192	44725180	-	RAMPAGE_only	3	3	10	0.519594	3.121928	chr19	44725104	44725160	SINE|MIR|MIR1_Amn	-	chr19	44632198	44718631	AC243964.2|ENST00000590796.1	-	44632198,44699083,44715949,44718449	44632619,44699177,44716081,44718631	0.700000
stomach_male_adult_37_years	chr16	15006394	15006404	15006394	+	RAMPAGE_only	9	9	17	0.883310	3.969816	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.588235
stomach_male_adult_37_years	chr5	109383422	109383463	109383462	-	High_confidence	4	4	16	0.831350	3.500000	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
stomach_male_adult_37_years	chr2	232551066	232551106	232551105	+	High_confidence	9	10	37	1.922497	4.810673	chr2	232551133	232551224	SINE|MIR|MIRb	+	chr2	232550806	232567205	EIF4E2|ENST00000454501.1	+	232550806,232556415,232557883,232564246,232566828,232567077	232551218,232556530,232558018,232564351,232566981,232567205	0.918919
stomach_male_adult_37_years	chr5	140177007	140177008	140177007	+	RAMPAGE_only	6	6	7	0.363716	2.584963	chr5	140176787	140177087	SINE|Alu|AluY	+	chr5	140175216	140228915	CYSTM1|ENST00000644078.1	+	140175216,140194445,140228729	140175285,140194652,140228915	0.714286
stomach_male_adult_37_years	chr20	3795750	3795789	3795750	+	High_confidence	12	12	68	3.533238	5.330346	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
stomach_male_adult_37_years	chr7	106012326	106012403	106012343	+	High_confidence	22	22	81	4.208710	5.611949	chr7	106012114	106012744	LINE|L2|L2a	-	chr7	106012132	106012714	STRG.63491.1	+	106012132	106012714	0.777778
stomach_male_adult_37_years	chr3	46463605	46463633	46463605	-	High_confidence	5	5	13	0.675472	3.392747	chr3	46463529	46463617	LTR|Gypsy|MamGypsy2-LTR	-	chr3	46436004	46463671	LTF|NM_001199149.1	-	46436004,46437939,46439295,46441415,46443440,46445280,46446439,46447307,46448862,46449853,46450494,46454304,46455294,46455795,46456289,46459655,46463443	46436229,46438129,46439480,46441483,46443582,46445436,46446493,46447398,46449017,46450028,46450673,46454360,46455442,46455978,46456398,46459819,46463671	0.692308
stomach_male_adult_37_years	chrX	47179145	47179153	47179145	+	High_confidence	2	2	8	0.415675	2.807355	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	0.875000
stomach_male_adult_37_years	chr5	150092616	150092624	150092623	-	RAMPAGE_only	9	13	20	1.039188	3.921928	chr5	150092452	150092809	LTR|ERVL-MaLR|THE1B	-	chr5	150053290	150086640	CSF1R|NM_001288705.1	-	150053290,150054321,150055236,150056025,150056218,150057286,150057503,150059699,150060861,150061490,150061722,150068214,150069872,150070181,150070455,150073300,150077275,150078111,150080051,150080766,150086378	150054224,150054430,150055336,150056137,150056341,150057384,150057592,150059862,150060972,150061595,150061849,150068330,150070063,150070302,150070571,150073493,150077435,150078248,150080336,150081024,150086640	0.600000
stomach_male_adult_37_years	chr5	34244736	34244758	34244757	-	High_confidence	7	7	12	0.623513	3.277613	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.583333
stomach_male_adult_37_years	chr7	150780825	150780838	150780825	-	High_confidence	2	3	6	0.311756	2.584963	chr7	150780561	150781085	LTR|ERVL-MaLR|MLT1K	-	chr7	150777878	150780756	STRG.65874.1	-	150777878,150778894,150780682	150778343,150779085,150780756	1.000000
stomach_male_adult_37_years	chr3	17562091	17562092	17562091	-	RAMPAGE_only	4	4	6	0.311756	2.584963	chr3	17561992	17562152	SINE|Alu|AluJr	+	chr3	17157161	17700020	TBC1D5|NM_001134381.1	-	17157161,17166766,17167748,17185108,17214206,17233684,17238162,17258505,17291894,17307991,17372074,17374470,17374628,17376524,17383912,17403180,17404693,17404871,17406417,17428449,17508473,17623848,17662989,17699977	17161256,17166928,17167828,17185208,17214370,17233750,17238419,17258591,17292001,17308134,17372247,17374540,17374679,17376613,17384015,17403248,17404768,17404961,17406526,17428519,17508605,17623913,17663110,17700020	0.500000
stomach_male_adult_37_years	chr19	45450734	45450758	45450734	-	High_confidence	4	4	16	0.831350	3.875000	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.812500
stomach_male_adult_37_years	chr3	197299316	197299320	197299316	-	High_confidence	6	6	18	0.935269	3.852169	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.888889
stomach_male_adult_37_years	chr2	9307279	9307292	9307279	+	RAMPAGE_only	2	3	6	0.311756	2.584963	chr2	9307128	9307302	DNA|hAT-Charlie|MER5A	-	chr2	9323120	9358838	ASAP2|ENST00000641030.1	+	9323120,9327825,9334737,9335092,9336035,9344531,9344730,9350807,9356046,9356178,9358755	9323250,9327911,9334813,9335179,9336044,9344635,9344800,9350895,9356095,9356345,9358838	0.500000
stomach_male_adult_37_years	chr6	168093050	168093056	168093055	-	High_confidence	35	37	71	3.689116	4.689906	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.957746
stomach_male_adult_37_years	chr21	41430564	41430586	41430585	+	RAMPAGE_only	3	3	8	0.415675	3.000000	chr21	41429929	41430715	DNA|hAT-Charlie|Charlie2b	+	chr21	41431713	41459214	MX1|ENST00000288383.10	+	41431713,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41432175,41435960,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	1.000000
stomach_male_adult_37_years	chr11	108224068	108224075	108224074	+	High_confidence	6	6	10	0.519594	2.947703	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.700000
stomach_male_adult_37_years	chr1	222737946	222738018	222737946	+	High_confidence	7	7	34	1.766619	4.079679	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.970588
stomach_male_adult_37_years	chr3	185544723	185544759	185544758	-	RAMPAGE_only	3	3	9	0.467634	2.750000	chr3	185544652	185544728	LINE|L1|HAL1b	-	chr3	185533675	185552510	LIPH|ENST00000429510.1	-	185533675,185534764,185546876,185552422	185533679,185535132,185546972,185552510	0.555556
stomach_male_adult_37_years	chr21	33931205	33931225	33931205	+	High_confidence	2	2	8	0.415675	2.807355	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.500000
stomach_male_adult_37_years	chr17	56904317	56904348	56904347	-	High_confidence	3	5	12	0.623513	3.277613	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56895769	56904343	TRIM25|ENST00000570473.5	-	56895769,56899114,56901418,56904254	56895952,56899180,56901578,56904343	0.833333
stomach_male_adult_37_years	chr1	2594091	2594096	2594095	-	High_confidence	4	4	8	0.415675	2.807355	chr1	2593981	2594096	SINE|MIR|MIRb	-	chr1	2592654	2594073	MMEL1|ENST00000469962.1	-	2592654,2592832,2593813	2592720,2592966,2594073	0.500000
stomach_male_adult_37_years	chr5	73078287	73078289	73078287	+	RAMPAGE_only	3	6	8	0.415675	2.750000	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	73058196	73089180	STRG.44014.2	+	73058196,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588	73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73089180	1.000000
stomach_male_adult_37_years	chr4	1241325	1241354	1241325	-	RAMPAGE_only	4	4	14	0.727431	3.093069	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1248740	CTBP1|ENST00000513420.1	-	1225437,1228198,1238182,1241324,1248660	1225566,1228343,1238337,1241519,1248740	0.857143
stomach_male_adult_37_years	chr2	55228113	55228159	55228158	-	RAMPAGE_only	4	7	17	0.883310	3.452820	chr2	55228053	55228212	LINE|L2|L2c	+	chr2	55222271	55224398	CLHC1|ENST00000403506.1	-	55222271,55224190	55222493,55224398	0.588235
stomach_male_adult_37_years	chr1	27301454	27301458	27301454	+	High_confidence	4	4	8	0.415675	3.000000	chr1	27301504	27301735	SINE|MIR|MIRb	+	chr1	27302038	27308244	STRG.1527.4	+	27302038,27303620,27305000,27306185	27302079,27303795,27305193,27308244	0.875000
stomach_male_adult_37_years	chr5	95509599	95509601	95509599	-	RAMPAGE_only	2	4	6	0.311756	2.584963	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95502902	95516674	TTC37|ENST00000508181.5	-	95502902,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524	95503003,95503938,95506992,95509687,95512618,95513645,95514923,95516409,95516674	0.833333
stomach_male_adult_37_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	75	76	76	3.948913	4.425603	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	0.986842
stomach_male_adult_37_years	chr22	39021125	39021156	39021155	+	High_confidence	9	9	34	1.766619	4.116300	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021129	39021498	STRG.130408.1	+	39021129	39021498	0.735294
stomach_male_adult_37_years	chr3	188225403	188225404	188225403	+	High_confidence	5	5	7	0.363716	2.584963	chr3	188225342	188225427	SINE|MIR|MIR3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.714286
stomach_male_adult_37_years	chr1	174874382	174874446	174874418	+	RAMPAGE_only	16	17	89	4.624385	5.995341	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174700730	174990341	RABGAP1L|ENST00000469553.6	+	174700730,174702112,174752312,174811831,174877391,174957456,174957890,174969276,174976077,174978806,174982833,174988640,174989848	174700865,174702256,174752354,174811960,174877605,174957549,174958173,174969387,174976182,174978890,174982905,174988838,174990341	0.606742
stomach_male_adult_37_years	chr6	36540276	36540277	36540276	-	High_confidence	33	34	38	1.974457	4.939183	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36540828	STRG.51165.2	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071	36494637,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540828	0.921053
stomach_male_adult_37_years	chr11	7906253	7906289	7906253	-	High_confidence	4	4	11	0.571553	3.321928	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.818182
stomach_male_adult_37_years	chr11	119046452	119046464	119046463	-	RAMPAGE_only	5	5	13	0.675472	3.026987	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	1.000000
stomach_male_adult_37_years	chr9	76516685	76516723	76516722	+	RAMPAGE_only	3	3	13	0.675472	3.700440	chr9	76516620	76517014	LTR|ERV1|MER110A	-	chr9	76553190	76564726	STRG.75659.8	+	76553190,76564377	76553232,76564726	0.615385
stomach_male_adult_37_years	chr4	73574778	73574779	73574778	-	RAMPAGE_only	14	15	18	0.935269	3.969816	chr4	73574705	73574781	LINE|L1|L1ME3G	-	chr4	73573144	73611929	STRG.36896.5	-	73573144,73576409,73581816,73582188,73585179,73587839,73593450,73598639,73611730	73576310,73576731,73581868,73582290,73585364,73587934,73593593,73598718,73611929	0.944444
stomach_male_adult_37_years	chr8	144490166	144490185	144490184	+	High_confidence	5	5	9	0.467634	2.750000	chr8	144490224	144490523	SINE|Alu|AluSx1	+	chr8	144490093	144496762	PPP1R16A|ENST00000533829.1	+	144490093,144495619,144496460	144490212,144495756,144496762	0.555556
stomach_male_adult_37_years	chr1	235865253	235865256	235865255	-	RAMPAGE_only	3	5	7	0.363716	2.521641	chr1	235864944	235865509	LINE|L2|L2a	+	chr1	235829408	235866876	LYST|ENST00000468626.2	-	235829408,235833577,235866842	235830424,235833667,235866876	0.714286
stomach_male_adult_37_years	chr8	25342488	25342502	25342497	+	RAMPAGE_only	3	3	9	0.467634	3.169925	chr8	25342534	25342606	SINE|Alu|AluSx3	+	chr8	25351392	25364777	DOCK5|ENST00000481728.2	+	25351392,25358962,25363046,25364625	25351826,25359061,25363141,25364777	0.888889
stomach_male_adult_37_years	chr18	7946928	7946946	7946945	+	High_confidence	7	7	20	1.039188	3.584184	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.650000
stomach_male_adult_37_years	chr4	38694436	38694509	38694471	+	RAMPAGE_only	4	4	26	1.350944	4.100069	chr4	38694475	38694562	LINE|L2|L2-3_Crp	+	chr4	38664195	38701042	KLF3|ENST00000261438.9	+	38664195,38680586,38688584,38689728,38694745,38697081	38664461,38680682,38689071,38689879,38694906,38701042	0.500000
stomach_male_adult_37_years	chr12	56097531	56097547	56097533	+	RAMPAGE_only	2	3	8	0.415675	2.807355	chr12	56097319	56097693	DNA|hAT-Charlie|MER1B	+	chr12	56080204	56102092	STRG.95081.3	+	56080204,56083750,56084994,56086530,56087576,56087794,56088020,56088542,56088747,56092746,56092985,56093344,56093763,56094098,56094401,56095256,56095664,56096502,56096747,56097044,56098499,56098758,56099647,56099837,56100173,56101060,56101528	56080382,56083902,56085181,56086656,56087642,56087913,56088162,56088656,56088868,56092820,56093076,56093550,56093896,56094189,56094556,56095310,56095806,56096622,56096846,56097940,56098575,56098905,56099745,56100029,56100245,56101361,56102092	0.625000
stomach_male_adult_37_years	chr19	17336685	17336727	17336685	+	High_confidence	33	43	128	6.650801	5.712478	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.953125
stomach_male_adult_37_years	chr1	108939644	108939645	108939644	-	RAMPAGE_only	8	8	8	0.415675	3.000000	chr1	108939309	108939608	SINE|Alu|AluY	-	chr1	108928039	108938594	STRG.5969.3	-	108928039,108934624,108937076,108938165	108932501,108934942,108937418,108938594	1.000000
stomach_male_adult_37_years	chr9	84368698	84368727	84368726	-	High_confidence	2	2	6	0.311756	2.584963	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.833333
stomach_male_adult_37_years	chr20	43561110	43561165	43561139	+	High_confidence	9	9	38	1.974457	4.486348	chr20	43561105	43561386	LINE|L2|L2a	-	chr20	43561250	43561488	STRG.127105.1	+	43561250	43561488	0.947368
stomach_male_adult_37_years	chr1	179877315	179877355	179877343	-	High_confidence	3	3	10	0.519594	2.641604	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179865064	179877790	TOR1AIP2|ENST00000495650.1	-	179865064,179877692	179865854,179877790	0.600000
stomach_male_adult_37_years	chr1	166850042	166850053	166850052	+	RAMPAGE_only	5	5	10	0.519594	2.947703	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.900000
stomach_male_adult_37_years	chrX	19349983	19350016	19350008	+	RAMPAGE_only	3	3	17	0.883310	3.969816	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19343932	19361685	PDHA1|ENST00000422285.6	+	19343932,19349311,19349936,19351280,19353081,19354490,19355348,19355685,19357651,19358915,19359488	19344094,19349371,19350110,19351407,19353173,19354583,19355504,19355757,19357719,19359024,19361685	0.764706
stomach_male_adult_37_years	chr4	76596496	76596509	76596496	+	RAMPAGE_only	6	11	20	1.039188	3.921928	chr4	76596437	76596544	DNA|TcMar-Tigger|Tigger3c	+	chr4	76595091	76597052	STRG.37001.1	+	76595091	76597052	0.950000
stomach_male_adult_37_years	chr6	144533072	144533113	144533090	+	RAMPAGE_only	6	6	21	1.091147	3.921928	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.714286
stomach_male_adult_37_years	chrX	102901034	102901035	102901034	+	RAMPAGE_only	4	6	6	0.311756	2.584963	chrX	102901013	102901196	DNA|hAT-Charlie|MER3	+	chrX	102897580	102905691	Z68871.1|ENST00000429932.1	+	102897580,102900749,102901630,102905660	102897764,102900832,102901771,102905691	0.833333
stomach_male_adult_37_years	chr6	28335913	28335921	28335915	-	High_confidence	2	3	7	0.363716	2.584963	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.571429
stomach_male_adult_37_years	chr18	36122242	36122267	36122242	-	High_confidence	5	5	18	0.935269	3.572469	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.944444
stomach_male_adult_37_years	chr11	64226142	64226180	64226158	-	High_confidence	86	88	493	25.615976	7.469588	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.975659
stomach_male_adult_37_years	chr6	83976553	83976579	83976553	+	High_confidence	3	3	9	0.467634	2.725481	chr6	83976445	83976821	LTR|ERV1|MER4-int	-	chr6	83976614	83978401	STRG.53058.1	+	83976614,83977453	83976718,83978401	0.888889
stomach_male_adult_37_years	chr2	159382558	159382588	159382566	-	RAMPAGE_only	5	5	19	0.987228	3.826875	chr2	159382314	159382523	SINE|MIR|MIRb	-	chr2	159349032	159431833	STRG.19621.1	-	159349032,159349707,159373044,159374690,159382558,159383605,159385154,159386352,159389344,159395768,159397344,159398828,159400598,159404848,159405021,159411906,159412334,159427940,159428310,159429199,159430862	159349280,159350357,159373189,159374753,159382802,159383680,159385369,159386607,159389485,159395834,159397389,159398894,159400664,159404910,159405114,159411995,159412545,159428042,159428419,159429260,159431833	1.000000
stomach_male_adult_37_years	chr19	39354042	39354057	39354056	+	High_confidence	4	4	12	0.623513	3.027169	chr19	39353999	39354088	DNA|hAT-Charlie|MER117	-	chr19	39354003	39370115	SAMD4B|ENST00000599712.1	+	39354003,39356688,39369654	39354066,39357089,39370115	0.916667
stomach_male_adult_37_years	chr2	71378634	71378775	71378666	+	High_confidence	8	8	48	2.494050	4.926721	chr2	71378470	71379172	LINE|L2|L2a	-	chr2	71378020	71419449	STRG.15922.4	+	71378020,71380512,71396140,71398700,71400111,71400477,71401955,71403869,71405600,71406127,71408121,71418601	71380280,71380565,71396191,71399645,71400180,71400518,71402087,71403998,71405642,71406262,71408247,71419449	0.979167
stomach_male_adult_37_years	chrX	71198195	71198196	71198195	-	High_confidence	9	9	12	0.623513	3.251629	chrX	71198068	71198187	SINE|MIR|MIR3	-	chrX	71183558	71198175	AL590764.1|ENST00000450860.1	-	71183558,71197908	71184017,71198175	0.750000
stomach_male_adult_37_years	chr3	139344535	139344548	139344547	+	High_confidence	19	19	52	2.701888	4.951741	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.807692
stomach_male_adult_37_years	chr6	83976634	83976659	83976652	+	High_confidence	19	19	83	4.312629	6.022067	chr6	83976445	83976821	LTR|ERV1|MER4-int	-	chr6	83976614	83978401	STRG.53058.1	+	83976614,83977453	83976718,83978401	0.530120
stomach_male_adult_37_years	chr8	133254781	133254838	133254781	-	High_confidence	5	5	14	0.727431	3.807355	chr8	133254749	133254865	LINE|L2|L2b	+	chr8	133246626	133254882	NDRG1|ENST00000521664.1	-	133246626,133247874,133248714,133250439,133254538	133246663,133247926,133248771,133250543,133254882	0.714286
stomach_male_adult_37_years	chrX	7147344	7147392	7147391	+	High_confidence	2	2	7	0.363716	2.521641	chrX	7147334	7147545	DNA|hAT-Charlie|MER20	-	chrX	7147298	7351990	STRG.131247.1	+	7147298,7190883,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147606,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7351990	0.857143
stomach_male_adult_37_years	chr21	37083992	37084007	37083992	+	High_confidence	6	7	11	0.571553	3.277613	chr21	37083879	37084118	DNA|hAT-Charlie|MER113B	+	chr21	37083625	37093402	TTC3|ENST00000484047.5	+	37083625,37087246,37087832,37088798,37090232,37091292,37093308	37084331,37087401,37088346,37088886,37090286,37091626,37093402	1.000000
stomach_male_adult_37_years	chr11	71999607	71999635	71999607	+	High_confidence	2	3	10	0.519594	3.321928	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999600	72002697	IL18BP|ENST00000534583.5	+	71999600,72000350,72001200,72001404,72001783,72002552	72000012,72000557,72001324,72001552,72001948,72002697	1.000000
stomach_male_adult_37_years	chr19	55069739	55069781	55069739	-	High_confidence	12	19	52	2.701888	5.265467	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55044323	55069546	RDH13|NM_138412.3	-	55044323,55047386,55048328,55048658,55056652,55059156,55064295,55069321	55045309,55047488,55048541,55048763,55056808,55059275,55064412,55069546	0.615385
stomach_male_adult_37_years	chr17	59619894	59619923	59619894	+	High_confidence	426	514	1545	80.277247	6.336534	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.950162
stomach_male_adult_37_years	chr5	40775584	40775589	40775584	-	RAMPAGE_only	5	6	10	0.519594	2.721928	chr5	40775545	40776521	LINE|L2|L2a	-	chr5	40764769	40771855	PRKAA1|ENST00000505783.5	-	40764769,40767465,40769415,40771718	40765238,40767690,40769503,40771855	0.900000
stomach_male_adult_37_years	chr3	190124272	190124278	190124277	-	RAMPAGE_only	15	17	31	1.610741	4.478232	chr3	190124217	190124287	LTR|ERVL|LTR40c	+	chr3	189956727	190122437	P3H2|NM_001134418.1	-	189956727,189963957,189970815,189971889,189972873,189973908,189974557,189983045,189984549,189986787,189987526,189988906,189994093,189995289,190122202	189958004,189964098,189970891,189972007,189973024,189974004,189974685,189983140,189984590,189986877,189987669,189989038,189994283,189995442,190122437	0.870968
stomach_male_adult_37_years	chr9	41007237	41007238	41007237	+	RAMPAGE_only	5	5	7	0.363716	2.807355	chr9	41007186	41007588	LINE|L1|L1HS	+	chr9	40992316	41008946	STRG.75020.2	+	40992316,40993252,40994632,41007439,41008880	40992775,40993434,40994699,41007609,41008946	0.714286
stomach_male_adult_37_years	chr7	103353922	103353957	103353956	+	High_confidence	5	6	14	0.727431	3.378783	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.928571
stomach_male_adult_37_years	chr3	15341379	15341381	15341379	-	High_confidence	6	9	10	0.519594	2.725481	chr3	15341159	15341407	LINE|L2|L2a	+	chr3	15255649	15341368	SH3BP5|ENST00000408919.7	-	15255649,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341368	0.500000
stomach_male_adult_37_years	chr11	64242383	64242547	64242546	+	High_confidence	14	15	121	6.287085	5.825657	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.975207
stomach_male_adult_37_years	chr5	147831873	147831883	147831882	-	High_confidence	3	3	7	0.363716	2.807355	chr5	147831826	147831957	SINE|MIR|MIR3	+	chr5	147824567	147831786	SPINK1|ENST00000296695.9	-	147824567,147828021,147829598,147831522	147824706,147828128,147829630,147831786	1.000000
stomach_male_adult_37_years	chr7	74046747	74046758	74046757	+	RAMPAGE_only	5	5	9	0.467634	2.725481	chr7	74046801	74047110	SINE|Alu|AluSz6	+	chr7	74028187	74068700	ELN|ENST00000320399.10	+	74028187,74035363,74036554,74037706,74041215,74042613,74042983,74043117,74043878,74045221,74046187,74046695,74047674,74048141,74048502,74051749,74051923,74053162,74054715,74056270,74056671,74057639,74059885,74060139,74060375,74061100,74063152,74063309,74063620,74065693,74065943,74066731,74068656	74028269,74035414,74036584,74037739,74041251,74042706,74043034,74043168,74043920,74045293,74046217,74046767,74047716,74048201,74048556,74051839,74051983,74053309,74054769,74056435,74056713,74057696,74060047,74060184,74060600,74061139,74063224,74063369,74063695,74065732,74065997,74066776,74068700	0.888889
stomach_male_adult_37_years	chr3	37058886	37058907	37058886	-	RAMPAGE_only	8	9	29	1.506822	4.280226	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	1.000000
stomach_male_adult_37_years	chr16	27286225	27286234	27286233	+	High_confidence	7	7	23	1.195066	4.349649	chr16	27285896	27286308	LTR|ERVL-MaLR|MLT1G	-	chr16	27286656	27290492	FLJ21408|ENST00000566535.1	+	27286656,27290244	27286744,27290492	0.521739
stomach_male_adult_37_years	chr1	45552521	45552522	45552521	+	RAMPAGE_only	4	4	7	0.363716	2.521641	chr1	45552514	45552580	LINE|L2|L2b	-	chr1	45551066	45570049	AKR1A1|ENST00000351829.8	+	45551066,45561788,45566568,45566868,45567981,45568484,45568926,45569142,45569890	45551155,45561878,45566688,45567020,45568177,45568684,45568999,45569229,45570049	0.571429
stomach_male_adult_37_years	chr7	11192962	11192981	11192977	+	High_confidence	3	4	9	0.467634	3.000000	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.666667
stomach_male_adult_37_years	chr12	8681676	8681677	8681676	+	High_confidence	18	18	24	1.247025	4.243300	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.875000
stomach_male_adult_37_years	chr6	31587247	31587275	31587274	+	High_confidence	4	4	12	0.623513	3.584963	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	0.833333
stomach_male_adult_37_years	chr12	18491537	18491538	18491537	+	RAMPAGE_only	8	9	12	0.623513	3.459432	chr12	18491467	18491583	DNA|hAT-Ac|OldhAT1	-	chr12	18282043	18648095	PIK3C2G|ENST00000546003.5	+	18282043,18286853,18290854,18293900,18313961,18320961,18325034,18338425,18343326,18346640,18362763,18371179,18381765,18391121,18399658,18420940,18423944,18488448,18491450,18496061,18497618,18503280,18505291,18538155,18546322,18562702,18563376,18566948,18594493,18609534,18640428,18647875	18282759,18286929,18291012,18294015,18314064,18321032,18325098,18338548,18343360,18346836,18362886,18371311,18381880,18391252,18399847,18421034,18424039,18488629,18491558,18496154,18497748,18503417,18505461,18538312,18546432,18562892,18563498,18567057,18594569,18609629,18640554,18648095	0.666667
stomach_male_adult_37_years	chr3	189121294	189121299	189121294	+	RAMPAGE_only	11	11	20	1.039188	3.932138	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.550000
stomach_male_adult_37_years	chr6	26474333	26474342	26474333	+	RAMPAGE_only	2	2	8	0.415675	2.521641	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.500000
stomach_male_adult_37_years	chr11	118647743	118647769	118647768	+	RAMPAGE_only	4	5	9	0.467634	2.947703	chr11	118647666	118647768	SINE|MIR|MIRb	-	chr11	118646333	118657152	PHLDB1|ENST00000526537.2	+	118646333,118650076,118650444,118655604,118656682	118648076,118650193,118650547,118655690,118657152	1.000000
stomach_male_adult_37_years	chr5	139364647	139364666	139364647	+	RAMPAGE_only	3	3	7	0.363716	2.584963	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.714286
stomach_male_adult_37_years	chr1	40403691	40403719	40403691	+	RAMPAGE_only	3	3	9	0.467634	2.725481	chr1	40403687	40403808	SINE|MIR|MIRb	-	chr1	40396799	40423326	SMAP2|NM_001198980.1	+	40396799,40406735,40408652,40409756,40413015,40414158,40415271,40416175,40416779,40421975	40396890,40406869,40408738,40409835,40413102,40414240,40415381,40416341,40417096,40423326	0.666667
stomach_male_adult_37_years	chr22	50582180	50582181	50582180	-	High_confidence	7	7	9	0.467634	2.750000	chr22	50582144	50582195	SINE|MIR|MIRb	+	chr22	50578965	50582820	CHKB|ENST00000479003.5	-	50578965,50579425,50579726,50579973,50580189,50580564,50581419,50581748	50579255,50579507,50579830,50580082,50580416,50580660,50581553,50582820	0.888889
stomach_male_adult_37_years	chr14	102235451	102235481	102235458	-	High_confidence	23	23	64	3.325401	4.683884	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.968750
stomach_male_adult_37_years	chr1	222737564	222737590	222737564	+	High_confidence	2	2	6	0.311756	2.584963	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.500000
stomach_male_adult_37_years	chr1	52913956	52913991	52913990	-	RAMPAGE_only	2	2	11	0.571553	3.121928	chr1	52913984	52914299	LINE|L2|L2b	-	chr1	52913719	52921721	ECHDC2|ENST00000474789.1	-	52913719,52921552	52914095,52921721	0.636364
stomach_male_adult_37_years	chr17	50737288	50737319	50737312	+	RAMPAGE_only	2	2	10	0.519594	2.725481	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50719569	50744813	LUC7L3|ENST00000508045.5	+	50719569,50736959,50737286,50738136,50740305,50741101,50741656,50743705,50744651	50719831,50737026,50737479,50738199,50740345,50741246,50741731,50743810,50744813	0.500000
stomach_male_adult_37_years	chr20	37744605	37744621	37744608	+	High_confidence	11	11	47	2.442091	5.283208	chr20	37744532	37744694	DNA|hAT-Charlie|MER117	+	chr20	37744644	37872129	CTNNBL1|ENST00000373473.5	+	37744644,37746467,37765196,37767952,37777344,37777653,37779186,37802866,37840101,37842338,37859898,37860271,37871924	37744713,37746647,37765290,37768044,37777417,37777712,37779335,37803048,37840199,37842419,37860036,37860344,37872129	0.702128
stomach_male_adult_37_years	chr1	92847193	92847209	92847193	-	RAMPAGE_only	10	10	17	0.883310	3.410417	chr1	92847043	92847171	LINE|L1|L1ME4c	-	chr1	92842159	92877150	FAM69A|ENST00000613047.4	-	92842159,92847182,92850847,92876295,92876960	92844195,92847359,92850955,92876430,92877150	1.000000
stomach_male_adult_37_years	chr1	155478111	155478112	155478111	-	RAMPAGE_only	13	16	16	0.831350	3.625000	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155407797	155459962	STRG.7768.6	-	155407797,155415743,155438326,155459796	155408402,155415923,155439068,155459962	0.625000
stomach_male_adult_37_years	chr11	119314501	119314562	119314501	-	RAMPAGE_only	4	4	20	1.039188	4.142664	chr11	119314166	119314455	SINE|Alu|AluJr	-	chr11	119308528	119317116	MCAM|ENST00000264036.5	-	119308528,119310348,119310755,119311089,119311279,119311529,119311807,119312051,119312265,119312526,119312769,119314488,119314678,119314832,119315138,119317034	119309915,119310466,119310903,119311185,119311421,119311651,119311949,119312170,119312428,119312648,119312949,119314576,119314749,119315040,119315263,119317116	0.950000
stomach_male_adult_37_years	chr12	109179242	109179282	109179281	+	RAMPAGE_only	5	9	13	0.675472	3.418296	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109139396	109260147	ACACB|ENST00000377854.9	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260147	0.923077
stomach_male_adult_37_years	chr9	123179187	123179221	123179220	-	RAMPAGE_only	11	13	32	1.662700	4.812500	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.906250
stomach_male_adult_37_years	chr7	130915919	130915922	130915921	+	High_confidence	4	8	8	0.415675	3.000000	chr7	130915903	130916038	SINE|MIR|MIRc	+	chr7	130915902	130939320	STRG.64768.1	+	130915902,130939239	130916132,130939320	0.500000
stomach_male_adult_37_years	chr15	92939462	92939463	92939462	+	High_confidence	4	5	7	0.363716	2.584963	chr15	92939359	92939489	DNA|hAT-Charlie|MER5A	+	chr15	92939653	92949228	CHD2|ENST00000637613.1	+	92939653,92941821,92942842,92944414,92945820,92946037,92946247,92948951	92939718,92941955,92943068,92944515,92945865,92946082,92946340,92949228	0.571429
stomach_male_adult_37_years	chr15	45102071	45102076	45102071	-	RAMPAGE_only	7	7	17	0.883310	3.875000	chr15	45102071	45102229	LINE|CR1|Plat_L3	+	chr15	45092812	45108615	STRG.107132.8	-	45092812,45094562,45094935,45095436,45097237,45097613,45098008,45099382,45099661,45100049,45100754,45101204,45103959,45104139,45105642,45106124,45106527,45106831,45107344,45108046	45094272,45094691,45095091,45096060,45097391,45097741,45098058,45099538,45099892,45100228,45100838,45101989,45104053,45104365,45105828,45106327,45106641,45106969,45107463,45108615	0.882353
stomach_male_adult_37_years	chr3	9973632	9973639	9973638	-	RAMPAGE_only	5	5	14	0.727431	3.378783	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	1.000000
stomach_male_adult_37_years	chr11	65437264	65437933	65437556	+	RAMPAGE_only	100	103	1994	103.607010	6.936981	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
stomach_male_adult_37_years	chr11	65430093	65430195	65430112	+	RAMPAGE_only	64	64	459	23.849357	5.707844	chr11	65430027	65430148	SINE|MIR|MIRb	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.997821
stomach_male_adult_37_years	chr9	117643145	117643152	117643151	+	RAMPAGE_only	5	5	10	0.519594	2.725481	chr9	117641898	117643291	LTR|ERV1|LTR12C	-	chr9	117648605	117657027	LOC101928797|NR_109806.1	+	117648605,117650851,117652287,117653630,117655607,117656395	117648695,117650977,117652447,117653741,117655787,117657027	0.500000
stomach_male_adult_37_years	chr11	65431421	65431494	65431421	+	RAMPAGE_only	27	31	84	4.364588	5.890910	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.976190
stomach_male_adult_37_years	chr16	15798662	15798670	15798664	-	RAMPAGE_only	44	55	94	4.884182	5.619340	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.936170
stomach_male_adult_37_years	chr11	57793995	57794070	57793995	+	RAMPAGE_only	10	15	54	2.805807	5.162295	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.925926
stomach_male_adult_37_years	chr2	38083053	38083084	38083053	+	High_confidence	7	9	24	1.247025	4.142915	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.666667
stomach_male_adult_37_years	chr12	7502490	7502547	7502517	-	High_confidence	16	16	78	4.052832	5.630025	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	1.000000
stomach_male_adult_37_years	chr11	57793718	57793786	57793743	+	RAMPAGE_only	12	13	54	2.805807	5.133396	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57786290	57808535	STRG.88061.11	+	57786290,57791384,57795576,57796456,57801732,57803620,57804662,57805881,57806914,57808164,57808389	57789155,57794081,57795729,57796992,57802196,57803804,57804780,57806035,57806983,57808292,57808535	0.851852
stomach_male_adult_37_years	chr2	68944476	68944558	68944476	-	RAMPAGE_only	40	40	137	7.118435	4.878777	chr2	68941107	68944555	LINE|L1|L1PA16	-	chr2	68938799	68949357	STRG.15728.4	-	68938799,68946303,68947146	68944543,68946460,68949357	0.992701
stomach_male_adult_37_years	chr2	170743955	170743956	170743955	-	RAMPAGE_only	7	7	7	0.363716	2.807355	chr2	170743777	170744187	LTR|ERVL|LTR52	-	chr2	170723085	170770766	AC007405.1|ENST00000442456.4	-	170723085,170727284,170727658,170730367,170733878,170740631,170770701	170723593,170727328,170727788,170730997,170733994,170741287,170770766	1.000000
stomach_male_adult_37_years	chr18	42027515	42027545	42027538	+	RAMPAGE_only	3	3	9	0.467634	3.000000	chr18	42027565	42027649	DNA|hAT-Charlie|MER58B	+	chr18	42025781	42037817	PIK3C3|ENST00000590013.2	+	42025781,42027442,42029324,42033825,42037691	42025939,42027548,42029441,42033957,42037817	0.888889
stomach_male_adult_37_years	chr19	7642267	7642322	7642301	+	High_confidence	9	14	72	3.741076	4.747071	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7647455	STRG.122133.3	+	7642245,7642428,7642765,7642982,7643164,7644613,7645196,7646248,7647161,7647353	7642333,7642536,7642823,7643048,7643245,7644752,7645306,7646344,7647247,7647455	0.972222
stomach_male_adult_37_years	chr7	107580245	107580267	107580245	+	High_confidence	253	257	1197	62.195382	7.020501	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.906433
stomach_male_adult_37_years	chr2	95824778	95825082	95824937	-	RAMPAGE_only	46	57	477	24.784626	6.895382	chr2	95824349	95826979	LINE|L1|L1PA10	-	chr2	95807051	95826981	LINC00342|NR_103734.1	-	95807051,95814049,95824200	95807302,95814145,95826981	0.987421
stomach_male_adult_37_years	chr2	95862266	95862291	95862266	-	RAMPAGE_only	2	2	8	0.415675	2.500000	chr2	95861464	95862675	LINE|L1|L1MEc	+	chr2	95852289	95859929	ANKRD36C|ENST00000488721.5	-	95852289,95855265,95857308,95859860	95853861,95856180,95857492,95859929	0.625000
stomach_male_adult_37_years	chr6	129584040	129584098	129584087	-	RAMPAGE_only	6	6	29	1.506822	4.014147	chr6	129583973	129584076	LINE|RTE-BovB|MamRTE1	-	chr6	129578418	129596875	ARHGAP18|ENST00000483367.5	-	129578418,129580069,129583987,129596788	129578604,129580131,129584112,129596875	0.724138
stomach_male_adult_37_years	chrX	283488	283507	283488	+	High_confidence	1	1	7	0.363716	2.584963	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.857143
stomach_male_adult_37_years	chr1	93324861	93324882	93324861	-	High_confidence	5	5	22	1.143106	3.689704	chr1	93324761	93324840	LINE|CR1|L3b	-	chr1	93264646	93324691	CCDC18-AS1|ENST00000415150.5	-	93264646,93305387,93315148,93318167,93324634	93264772,93305470,93315269,93318228,93324691	0.681818
stomach_male_adult_37_years	chrY	3002962	3002990	3002989	+	High_confidence	6	7	16	0.831350	3.506891	chrY	3002992	3005218	LTR|ERV1|HERV3-int	+	chrY	3002922	3003436	STRG.136761.1	+	3002922	3003436	0.750000
stomach_male_adult_37_years	chr10	50579900	50579901	50579900	-	RAMPAGE_only	5	5	8	0.415675	2.521641	chr10	50578916	50580156	LINE|L1|HAL1	+	chr10	50343588	50623952	STRG.81344.1	-	50343588,50433475,50460672,50466889,50519830,50590152,50623706	50344345,50433556,50460814,50466932,50519921,50590247,50623952	0.500000
stomach_male_adult_37_years	chr10	93431427	93431449	93431448	-	RAMPAGE_only	4	4	12	0.623513	3.188722	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	1.000000
stomach_male_adult_37_years	chr3	9792205	9792227	9792205	-	High_confidence	3	3	9	0.467634	2.750000	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.555556
stomach_male_adult_37_years	chr11	65016272	65016273	65016272	+	RAMPAGE_only	33	41	42	2.182294	4.686582	chr11	65016219	65016460	LINE|L2|L2a	-	chr11	65497687	65506431	MALAT1|ENST00000619449.2	+	65497687,65498681,65498968,65506259	65497865,65498734,65503905,65506431	0.976190
stomach_male_adult_37_years	chr2	88784865	88784866	88784865	+	RAMPAGE_only	4	7	7	0.363716	2.521641	chr2	88784858	88784980	DNA|hAT-Charlie|MER5A1	-	chr2	88782711	88805403	ANKRD36BP2|ENST00000575193.1	+	88782711,88782852,88784597,88784720,88786469,88786590,88788317,88788441,88792420,88797281,88801053,88802712,88804379,88804786,88805378	88782762,88782925,88784626,88784793,88786498,88786663,88788346,88788514,88792494,88797423,88801309,88802865,88804450,88804880,88805403	1.000000
stomach_male_adult_37_years	chr3	193614823	193614873	193614823	+	High_confidence	3	3	13	0.675472	2.565448	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	1.000000
stomach_male_adult_37_years	chr2	164843677	164843679	164843677	-	High_confidence	7	14	15	0.779391	3.664498	chr2	164843644	164843831	LTR|ERVL-MaLR|MLT1I	+	chr2	164728158	164843679	COBLL1|ENST00000448708.5	-	164728158,164729913,164743686,164841155,164843651	164728197,164730115,164743875,164841246,164843679	0.533333
stomach_male_adult_37_years	chr19	35164213	35164236	35164235	+	High_confidence	5	6	15	0.779391	3.373557	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	1.000000
stomach_male_adult_37_years	chr3	33864056	33864091	33864090	+	RAMPAGE_only	3	5	14	0.727431	3.546594	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.928571
stomach_male_adult_37_years	chr2	149153616	149153756	149153755	+	High_confidence	29	30	173	8.988973	5.527052	chr2	149153494	149153796	SINE|Alu|AluSc	+	chr2	149153276	149154660	STRG.18998.1	+	149153276	149154660	0.988439
stomach_male_adult_37_years	chr15	69563148	69563149	69563148	+	RAMPAGE_only	4	4	6	0.311756	2.584963	chr15	69563010	69563181	SINE|MIR|MIRb	+	chr15	69561956	69680396	DRAIC|ENST00000644274.1	+	69561956,69563115,69563589,69565193,69570739,69578325,69671725,69677545,69680210	69562017,69563302,69563804,69565527,69570904,69578461,69671907,69677640,69680396	1.000000
stomach_male_adult_37_years	chr1	151223877	151223878	151223877	+	High_confidence	4	4	7	0.363716	2.807355	chr1	151223705	151223982	SINE|Alu|AluSx1	+	chr1	151223879	151232345	PIP5K1A|ENST00000468772.5	+	151223879,151227319,151231670,151232247	151224279,151227400,151231801,151232345	1.000000
stomach_male_adult_37_years	chr11	96387582	96387624	96387604	-	High_confidence	3	3	9	0.467634	2.500000	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	0.777778
stomach_male_adult_37_years	chr8	116648828	116648905	116648864	-	RAMPAGE_only	11	18	53	2.753847	5.133396	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
stomach_male_adult_37_years	chr2	113625658	113625679	113625678	-	RAMPAGE_only	3	3	6	0.311756	2.584963	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	1.000000
stomach_male_adult_37_years	chr4	1241488	1241491	1241488	-	High_confidence	6	6	14	0.727431	3.700440	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1235752	1241463	CTBP1|ENST00000515690.1	-	1235752,1238182,1241324	1236316,1238337,1241463	0.642857
stomach_male_adult_37_years	chr10	133369963	133370029	133370028	-	RAMPAGE_only	3	3	20	1.039188	4.021928	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
stomach_male_adult_37_years	chr18	46087015	46087066	46087018	-	High_confidence	5	7	25	1.298985	4.220176	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.880000
stomach_male_adult_37_years	chr1	33021416	33021456	33021454	-	RAMPAGE_only	17	22	57	2.961685	4.637252	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.929825
stomach_male_adult_37_years	chr10	93431475	93431504	93431475	-	RAMPAGE_only	3	3	11	0.571553	3.095795	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	1.000000
stomach_male_adult_37_years	chr21	25606449	25606479	25606462	-	High_confidence	2	2	10	0.519594	2.947703	chr21	25606381	25606463	LINE|RTE-BovB|MamRTE1	+	chr21	25597325	25606649	STRG.128242.1	-	25597325,25599798,25601367,25603795,25606448	25597414,25599866,25601467,25603935,25606649	0.800000
stomach_male_adult_37_years	chr16	2768771	2768786	2768771	+	High_confidence	3	4	9	0.467634	2.947703	chr16	2768682	2768858	LINE|CR1|L3b	-	chr16	2768745	2770229	SRRM2|ENST00000576878.1	+	2768745,2769627	2769284,2770229	1.000000
stomach_male_adult_37_years	chrX	147937548	147937584	147937583	+	RAMPAGE_only	4	4	21	1.091147	3.616349	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.857143
stomach_male_adult_37_years	chr8	29528668	29528678	29528668	+	RAMPAGE_only	9	12	27	1.402903	4.356558	chr8	29528587	29528733	DNA|hAT-Charlie|MER5A	-	chr8	29527311	29530323	AC084026.2|ENST00000521101.1	+	29527311,29529790	29527420,29530323	0.518519
stomach_male_adult_37_years	chr16	67183412	67183473	67183412	-	High_confidence	4	4	19	0.987228	3.503258	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67180348	67183946	STRG.113023.1	-	67180348,67181557,67183261	67180666,67181697,67183946	0.789474
stomach_male_adult_37_years	chr8	73123885	73123915	73123894	-	High_confidence	4	4	16	0.831350	3.280639	chr8	73123782	73124267	LTR|ERVK|MER9B	-	chr8	73066531	73124088	SBSPON|ENST00000519697.1	-	73066531,73069804,73071779,73081018,73123506	73067458,73069981,73071870,73081213,73124088	0.687500
stomach_male_adult_37_years	chr10	5023239	5023263	5023239	-	RAMPAGE_only	11	11	25	1.298985	4.386842	chr10	5023105	5023345	LTR|ERVL-MaLR|MLT1F2	-	chr10	5006461	5017934	AKR1C2|ENST00000604711.1	-	5006461,5007406,5010343,5017899	5006592,5007506,5010653,5017934	0.520000
stomach_male_adult_37_years	chr22	37924224	37924243	37924242	+	RAMPAGE_only	3	4	9	0.467634	3.000000	chr22	37924127	37924386	LINE|L2|L2c	-	chr22	37906296	37942822	MICALL1|ENST00000215957.10	+	37906296,37911951,37912350,37917706,37919035,37921971,37924659,37925660,37927410,37931798,37932552,37932797,37933038,37937079,37937745,37940708	37906568,37912000,37912492,37917795,37919178,37922426,37924717,37926043,37927826,37931933,37932679,37932888,37933112,37937194,37937792,37942822	0.888889
stomach_male_adult_37_years	chr19	10825128	10825212	10825211	+	RAMPAGE_only	9	10	97	5.040060	5.250758	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	0.948454
stomach_male_adult_37_years	chr1	159976616	159976861	159976803	+	RAMPAGE_only	25	27	290	15.068221	4.820937	chr1	159976818	159976895	SINE|Alu|FLAM_A	+	chr1	159964953	159977175	STRG.7870.1	+	159964953,159976643	159965645,159977175	0.748276
stomach_male_adult_37_years	chr5	140228614	140228649	140228619	+	RAMPAGE_only	8	11	23	1.195066	4.186704	chr5	140228522	140228621	LINE|L2|L2b	-	chr5	140175216	140228915	CYSTM1|ENST00000644078.1	+	140175216,140194445,140228729	140175285,140194652,140228915	0.565217
stomach_male_adult_37_years	chr20	3208675	3208676	3208675	+	High_confidence	8	8	8	0.415675	3.000000	chr20	3208670	3208727	DNA|hAT-Charlie|MER5A	-	chr20	3208867	3223870	ITPA|NM_001324237.1	+	3208867,3213168,3213318,3213984,3215280,3218516,3221840,3223365	3209033,3213226,3213383,3214058,3215312,3218632,3221917,3223870	0.625000
stomach_male_adult_37_years	chr9	73080369	73080370	73080369	-	High_confidence	41	41	41	2.130335	4.812076	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.878049
stomach_male_adult_37_years	chr1	206929295	206929862	206929357	-	RAMPAGE_only	607	636	4311	223.996901	6.907236	chr1	206929265	206929570	SINE|Alu|AluY	+	chr1	206928517	206946466	PIGR|ENST00000356495.4	-	206928517,206931496,206931670,206932455,206932985,206934419,206935485,206937094,206939118,206940488,206946335	206930413,206931555,206931802,206932577,206933166,206934746,206935818,206937751,206939463,206940584,206946466	0.997680
stomach_male_adult_37_years	chr16	2769732	2769880	2769820	+	High_confidence	27	27	134	6.962557	5.475452	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2771410	STRG.110876.13	+	2769894,2770603,2770857,2771120	2770465,2770717,2771049,2771410	0.947761
stomach_male_adult_37_years	chr1	41000634	41000635	41000634	+	RAMPAGE_only	9	9	9	0.467634	3.169925	chr1	41000551	41000643	LINE|L1|L1ME2	+	chr1	40979717	41012554	CTPS1|ENST00000648020.1	+	40979717,40983277,40984820,40987371,40988593,40991164,40991764,40995916,40997393,40999829,41002159,41003113,41006050,41007448,41008658,41008793,41009444,41010160,41011657	40979829,40983456,40984991,40987472,40988710,40991248,40991845,40996068,40997526,41001117,41002254,41003176,41006094,41007545,41008714,41008890,41009589,41010254,41012554	1.000000
stomach_male_adult_37_years	chr11	65887614	65887615	65887614	-	High_confidence	7	7	11	0.571553	3.459432	chr11	65887463	65887575	LINE|L2|L2	-	chr11	65884934	65888436	FIBP|ENST00000532229.1	-	65884934,65885077,65885508,65887599,65887933,65888333	65884998,65885186,65885663,65887726,65888132,65888436	0.727273
stomach_male_adult_37_years	chr11	72111412	72111435	72111434	-	High_confidence	3	3	7	0.363716	2.584963	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72107158	72111443	ANAPC15|ENST00000543050.5	-	72107158,72110087,72110543,72111156,72111411	72107605,72110225,72110603,72111286,72111443	0.857143
stomach_male_adult_37_years	chr9	111284874	111284875	111284874	-	High_confidence	10	11	12	0.623513	3.095795	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.750000
stomach_male_adult_37_years	chr2	101998960	101998978	101998977	+	High_confidence	4	4	12	0.623513	3.084963	chr2	101998446	101999045	LTR|ERVL-MaLR|MLT1H1	-	chr2	101998961	102028423	IL1R2|NR_048564.1	+	101998961,102008514,102009561,102015870,102019637,102022186,102024532,102026110,102028225	101999116,102008642,102009826,102016051,102019812,102022249,102024668,102026253,102028423	0.916667
stomach_male_adult_37_years	chr11	1178143	1178144	1178143	+	RAMPAGE_only	58	63	66	3.429319	4.988952	chr11	1177873	1178163	LTR|ERVL-MaLR|MLT1C	-	chr11	1157952	1201138	MUC5AC|ENST00000621226.2	+	1157952,1160611,1161526,1161906,1162531,1162954,1163881,1164105,1164406,1165301,1165621,1167876,1168482,1168641,1168861,1172428,1174495,1174881,1175217,1176150,1176513,1176927,1177230,1177453,1178443,1179091,1180021,1180353,1181138,1181270,1182154,1192782,1193484,1194109,1194486,1195011,1195875,1196387,1196616,1196876,1197467,1197902,1198267,1198873,1199086,1199370,1199694,1199854,1200437	1158072,1160689,1161586,1162168,1162646,1163045,1163991,1164319,1164532,1165419,1165760,1167987,1168552,1168779,1169026,1172523,1174622,1175137,1175270,1176251,1176665,1177066,1177344,1177633,1178683,1179248,1180150,1180516,1181182,1181459,1192525,1192982,1193659,1194360,1194670,1195279,1196054,1196475,1196720,1196908,1197639,1198004,1198305,1198996,1199185,1199490,1199764,1199969,1201138	0.590909
stomach_male_adult_37_years	chr9	137738515	137738602	137738589	+	High_confidence	4	4	20	1.039188	4.142664	chr9	137738221	137739080	LINE|L1|L1MB3	+	chr9	137738606	137754221	EHMT1|ENST00000495657.5	+	137738606,137743370,137743901,137752330,137754170	137738779,137743528,137744090,137752408,137754221	0.600000
stomach_male_adult_37_years	chr8	11795578	11795579	11795578	+	High_confidence	13	13	13	0.675472	3.238901	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	1.000000
stomach_male_adult_37_years	chr20	1467685	1467723	1467699	-	High_confidence	42	45	144	7.482151	5.643969	chr20	1467673	1468159	LTR|ERV1|LTR10B	+	chr20	1442161	1467692	NSFL1C|ENST00000216879.8	-	1442161,1445665,1452492,1453030,1454212,1454966,1458199,1464328,1466719	1443911,1445830,1452630,1453140,1454305,1455132,1458274,1464426,1467692	0.993056
stomach_male_adult_37_years	chr2	95857617	95857637	95857636	-	RAMPAGE_only	8	9	18	0.935269	3.852169	chr2	95857528	95858276	LTR|ERV1|MER4E	+	chr2	95852289	95859929	ANKRD36C|ENST00000488721.5	-	95852289,95855265,95857308,95859860	95853861,95856180,95857492,95859929	0.888889
stomach_male_adult_37_years	chr4	107694161	107694205	107694204	-	High_confidence	16	16	56	2.909725	5.033734	chr4	107694070	107694298	SINE|Alu|AluJo	-	chr4	107687128	107694298	PAPSS1|ENST00000506544.1	-	107687128,107693770	107687177,107694298	0.767857
stomach_male_adult_37_years	chr14	89486639	89486674	89486639	-	RAMPAGE_only	3	3	10	0.519594	2.947703	chr14	89486513	89486649	SINE|5S-Deu-L2|AmnSINE1	-	chr14	89161384	89417112	FOXN3|ENST00000557258.5	-	89161384,89180700,89280949,89350671,89411933,89416870	89162969,89180806,89281014,89350808,89412490,89417112	0.900000
stomach_male_adult_37_years	chr17	2975659	2975682	2975660	+	RAMPAGE_only	8	14	37	1.922497	4.550953	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2853886	3031038	STRG.114596.1	+	2853886,2905283,2957758,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921	2854102,2905368,2957794,2963462,2964068,2965643,2980365,2981248,2985197,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3031038	0.621622
stomach_male_adult_37_years	chr17	32684271	32684272	32684271	-	High_confidence	9	9	14	0.727431	3.180833	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32653863	32684284	MYO1D|ENST00000582217.1	-	32653863,32654476,32659114,32684174	32653947,32654621,32659338,32684284	0.714286
stomach_male_adult_37_years	chr10	132848651	132848701	132848700	+	High_confidence	50	58	233	12.106536	6.638989	chr10	132848295	132848877	LTR|ERV1|MER61F	+	chr10	132848628	132853123	STRG.85480.1	+	132848628,132850190,132851771,132852252	132849300,132850268,132851997,132853123	0.952790
stomach_male_adult_37_years	chr19	47751039	47751103	47751102	+	High_confidence	8	8	23	1.195066	3.551191	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47750177	47757005	NOP53|ENST00000595143.5	+	47750177,47750907,47751519,47752511,47754526,47754708,47755783,47756527,47756687,47756998	47750286,47751107,47751590,47752607,47754631,47754757,47755822,47756604,47756744,47757005	0.826087
stomach_male_adult_37_years	chr18	74480134	74480137	74480134	-	High_confidence	5	5	10	0.519594	2.947703	chr18	74479929	74480269	LTR|ERVL-MaLR|THE1B	-	chr18	74479773	74480070	STRG.121441.1	-	74479773	74480070	0.500000
stomach_male_adult_37_years	chr11	117202752	117202753	117202752	+	High_confidence	5	5	7	0.363716	2.807355	chr11	117202579	117202783	DNA|hAT-Charlie|MER58A	+	chr11	117201872	117204778	TAGLN|ENST00000532870.5	+	117201872,117203306,117203781,117204214	117203193,117203484,117203884,117204778	1.000000
stomach_male_adult_37_years	chr5	96979762	96979784	96979762	+	RAMPAGE_only	2	2	11	0.571553	3.121928	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	0.909091
stomach_male_adult_37_years	chr16	69996417	69996421	69996420	-	RAMPAGE_only	6	6	10	0.519594	2.641604	chr16	69996297	69996477	SINE|MIR|MIRb	+	chr16	69993019	70021930	PDXDC2P-NPIPB14P|ENST00000525331.5	-	69993019,69996068,69996389,70010750,70011840,70014103,70018046,70021823	69993248,69996226,69996468,70010856,70011929,70014167,70018097,70021930	0.800000
stomach_male_adult_37_years	chr17	43508342	43508362	43508343	+	RAMPAGE_only	5	7	12	0.623513	3.277613	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43493355	43520241	STRG.116668.2	+	43493355,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520129	43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43517322,43520241	0.916667
stomach_male_adult_37_years	chr6	39864990	39865036	39865020	+	High_confidence	3	3	13	0.675472	3.251629	chr6	39865016	39865115	DNA|TcMar-Tigger|Tigger19b	-	chr6	39864981	39868933	STRG.51461.6	+	39864981,39867509,39868822	39865074,39867843,39868933	0.923077
stomach_male_adult_37_years	chr18	39800295	39800314	39800313	-	High_confidence	5	5	10	0.519594	2.947703	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.500000
stomach_male_adult_37_years	chr8	24387778	24387800	24387778	-	High_confidence	2	2	7	0.363716	2.521641	chr8	24386908	24387825	LTR|ERVK|HERVK22-int	-	chr8	24295813	24387515	AC120193.1|ENST00000518988.5	-	24295813,24296153,24300884,24387160	24296057,24296250,24300929,24387515	0.571429
stomach_male_adult_37_years	chr10	4972479	4972519	4972479	+	RAMPAGE_only	2	3	13	0.675472	3.546594	chr10	4972406	4972485	DNA|hAT-Charlie|MER5A	-	chr10	4965618	4972747	STRG.79029.4	+	4965618,4966926,4968308,4968821,4972200	4966081,4967043,4968386,4968944,4972747	0.538462
stomach_male_adult_37_years	chr2	39453839	39453856	39453855	+	High_confidence	2	2	7	0.363716	2.584963	chr2	39453626	39453953	SINE|Alu|AluJo	-	chr2	39453921	39624356	AC007388.1|ENST00000446698.5	+	39453921,39454296,39516413,39518582,39624098	39453931,39454365,39516541,39518710,39624356	0.571429
stomach_male_adult_37_years	chr2	55268722	55268723	55268722	-	High_confidence	8	8	12	0.623513	3.277613	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55263827	55269038	MTIF2|ENST00000417363.5	-	55263827,55267568,55268577	55263865,55267635,55269038	0.500000
stomach_male_adult_37_years	chr1	179877240	179877282	179877280	-	High_confidence	3	5	13	0.675472	3.022055	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179865064	179877790	TOR1AIP2|ENST00000495650.1	-	179865064,179877692	179865854,179877790	0.538462
stomach_male_adult_37_years	chr1	1721622	1721678	1721636	-	High_confidence	22	27	70	3.637157	5.401700	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.657143
stomach_male_adult_37_years	chr2	229586868	229586903	229586868	-	RAMPAGE_only	4	4	11	0.571553	3.321928	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229407225	229714158	STRG.22892.1	-	229407225,229418107,229447315,229477139,229512782,229546946,229585857,229588393,229591579,229714147	229407345,229418230,229447540,229477253,229512936,229547092,229586024,229588488,229591888,229714158	0.727273
stomach_male_adult_37_years	chr10	94921369	94921443	94921369	+	RAMPAGE_only	2	2	19	0.987228	3.826875	chr10	94921320	94922405	LINE|L1|L1PA15-16	+	chr10	94688153	94938895	STRG.83817.1	+	94688153,94694916,94706783,94720395,94724345,94733296,94775057,94775389,94780498,94781820,94820495,94842836,94849916,94905748,94921364,94938436	94688274,94695077,94706960,94720537,94724533,94733438,94775220,94775539,94780659,94781997,94820637,94843024,94850058,94906065,94923333,94938895	0.947368
stomach_male_adult_37_years	chr4	185820783	185820863	185820828	+	High_confidence	5	5	34	1.766619	4.910992	chr4	185820741	185820911	LINE|L2|L2b	+	chr4	185820885	185826007	STRG.41382.1	+	185820885,185825817	185821366,185826007	0.705882
stomach_male_adult_37_years	chr7	30568912	30568913	30568912	-	RAMPAGE_only	10	10	11	0.571553	2.921928	chr7	30568321	30569340	LTR|ERV1|MER4-int	+	chr7	30544846	30570282	STRG.59738.3	-	30544846,30550635,30552099,30561465,30563730,30568832	30545088,30550781,30552179,30562128,30563998,30570282	0.636364
stomach_male_adult_37_years	chr11	77175226	77175303	77175226	+	High_confidence	16	17	81	4.208710	5.224561	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.938272
stomach_male_adult_37_years	chr12	62305944	62305987	62305977	+	High_confidence	2	2	8	0.415675	2.750000	chr12	62305734	62306281	LTR|ERVL-MaLR|MLT1F	+	chr12	62305594	62325933	USP15|ENST00000546694.1	+	62305594,62314789,62321463,62325871	62306058,62314916,62321609,62325933	0.875000
stomach_male_adult_37_years	chr20	35732389	35732390	35732389	-	High_confidence	20	20	22	1.143106	4.021928	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.909091
stomach_male_adult_37_years	chr8	61578141	61578142	61578141	+	High_confidence	300	303	304	15.795652	5.758308	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.993421
stomach_male_adult_37_years	chr9	72363470	72363565	72363523	-	RAMPAGE_only	4	4	26	1.350944	4.163856	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72365197	STRG.75530.6	-	72354457,72359417,72360109,72364695	72357056,72359521,72363606,72365197	0.961538
stomach_male_adult_37_years	chr2	213923806	213923828	213923806	+	RAMPAGE_only	6	6	13	0.675472	3.251629	chr2	213921220	213924593	LINE|L1|L1PA14	-	chr2	213284454	214241376	SPAG16|ENST00000452556.5	+	213284454,213296063,213297261,213340162,213350527,213364075,213375009,213489962,213862484,213929959,214013950,214108195,214149139,214238135	213284619,213296128,213297357,213340270,213350645,213364145,213375119,213490090,213862628,213930145,214014077,214108261,214149266,214241376	0.692308
stomach_male_adult_37_years	chr6	2968829	2968841	2968829	-	RAMPAGE_only	3	3	11	0.571553	3.121928	chr6	2968783	2968841	LINE|L1|HAL1	-	chr6	2948162	2970743	SERPINB6|ENST00000644178.1	-	2948162,2948913,2953043,2954591,2955523,2959167,2966399	2948699,2949069,2953186,2954709,2955670,2959342,2970743	0.909091
stomach_male_adult_37_years	chr13	108828696	108828706	108828697	+	RAMPAGE_only	4	7	15	0.779391	3.467720	chr13	108828500	108829198	LTR|ERVL|MER21C	+	chr13	108793579	109056057	MYO16|ENST00000375857.6	+	108793579,108806678,108820336,108823124,108844342,108855442,108866176,108883058,108888371,108898015,108910002,108957687,108961538,108962423,108964760,108992375,109008896,109019710,109046915,109052299,109055045,109055389	108793640,108806804,108820412,108823278,108844493,108855553,108866242,108883186,108888477,108898133,108910150,108957799,108961656,108962495,108964902,108992448,109009049,109019911,109046991,109052475,109055126,109056057	0.933333
stomach_male_adult_37_years	chr11	65431719	65431925	65431889	+	RAMPAGE_only	27	29	339	17.614231	6.758586	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
stomach_male_adult_37_years	chr14	77736978	77737020	77736978	-	High_confidence	3	3	9	0.467634	2.750000	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.777778
stomach_male_adult_37_years	chr7	101308299	101308325	101308316	+	High_confidence	16	21	94	4.884182	5.705998	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.925532
stomach_male_adult_37_years	chr17	32479860	32479866	32479860	+	High_confidence	2	2	7	0.363716	2.521641	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.857143
stomach_male_adult_37_years	chr12	75983911	75983931	75983911	-	High_confidence	2	2	8	0.415675	2.807355	chr12	75983502	75984058	LINE|L2|L2a	+	chr12	75563201	75984015	AC078923.1|ENST00000552856.1	-	75563201,75631166,75692104,75777499,75983720	75563400,75631314,75692179,75777530,75984015	0.500000
stomach_male_adult_37_years	chr3	155646932	155646975	155646974	-	RAMPAGE_only	10	15	34	1.766619	4.351410	chr3	155646900	155647041	LTR|ERVL-MaLR|MLT1F1	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	0.764706
stomach_male_adult_37_years	chr11	69672210	69672229	69672210	-	High_confidence	4	4	13	0.675472	2.855389	chr11	69671992	69672444	LTR|ERVL-MaLR|MLT1F	+	chr11	69667041	69671922	LTO1|ENST00000542470.5	-	69667041,69667894,69671748	69667587,69668012,69671922	0.769231
stomach_male_adult_37_years	chr5	177682244	177682248	177682247	+	High_confidence	3	3	7	0.363716	2.521641	chr5	177681956	177682437	LTR|ERV1|MER90a	+	chr5	177682293	177713969	AC138819.1|ENST00000509363.1	+	177682293,177706705,177713796	177682371,177706885,177713969	0.571429
stomach_male_adult_37_years	chr7	6590246	6590293	6590246	+	High_confidence	10	11	38	1.974457	4.411892	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.578947
stomach_male_adult_37_years	chr3	134200383	134200424	134200383	-	High_confidence	3	3	11	0.571553	2.845351	chr3	134199772	134200560	LTR|ERV1|LTR12	+	chr3	134199511	134200494	STRG.31241.1	-	134199511	134200494	0.909091
stomach_male_adult_37_years	chr8	27977125	27977126	27977125	-	High_confidence	35	38	47	2.442091	5.078639	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27871226	27977114	STRG.67615.3	-	27871226,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977114	0.787234
stomach_male_adult_37_years	chr1	166850306	166850330	166850329	+	RAMPAGE_only	4	4	10	0.519594	3.321928	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
stomach_male_adult_37_years	chrX	7147267	7147288	7147287	+	High_confidence	63	64	109	5.663573	5.949390	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147298	7351990	STRG.131247.1	+	7147298,7190883,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147606,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7351990	0.908257
stomach_male_adult_37_years	chr2	241372949	241372965	241372964	+	High_confidence	3	4	9	0.467634	2.725481	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241372848	241403923	FARP2|ENST00000445489.1	+	241372848,241403827	241373290,241403923	0.777778
stomach_male_adult_37_years	chr8	89708552	89708568	89708566	-	High_confidence	2	4	8	0.415675	2.807355	chr8	89708196	89714343	LINE|L1|L1PA4	+	chr8	89707987	89708578	STRG.69745.1	-	89707987	89708578	0.750000
stomach_male_adult_37_years	chr12	53467737	53467757	53467737	+	High_confidence	11	13	25	1.298985	4.053509	chr12	53467721	53467786	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.960000
stomach_male_adult_37_years	chr4	170226586	170226588	170226587	+	High_confidence	24	27	36	1.870538	4.900712	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.611111
stomach_male_adult_37_years	chr3	188153195	188153225	188153195	+	High_confidence	3	3	8	0.415675	2.807355	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153874	188406278	LPP|ENST00000430340.5	+	188153874,188225404,188312834,188406111	188154021,188225527,188312918,188406278	0.500000
stomach_male_adult_37_years	chr9	95967361	95967362	95967361	+	RAMPAGE_only	9	9	12	0.623513	2.584963	chr9	95967328	95967398	SINE|MIR|MIR3	-	chr9	95922401	96004855	ERCC6L2|ENST00000479391.6	+	95922401,95923259,95928150,95928718,95941453,95954727,95955913,95966561,95967458,95970575,95971932,95978060,96004519	95922418,95923379,95928277,95928864,95941549,95954922,95956013,95966714,95967625,95970656,95973088,95978215,96004855	1.000000
stomach_male_adult_37_years	chr8	39032689	39032749	39032698	+	RAMPAGE_only	32	34	158	8.209583	6.428664	chr8	39031444	39032803	LINE|L1|L1P2	-	chr8	38998077	39083236	STRG.68014.2	+	38998077,39007885,39011657,39013964,39016117,39017218,39018852,39021642,39023155,39025802,39026676,39041945,39054480,39055576,39071297,39077227,39082640,39082967	38998356,39007983,39011716,39014043,39016194,39017414,39018918,39021714,39023325,39025884,39026810,39042117,39054573,39055772,39071403,39077411,39082721,39083236	0.721519
stomach_male_adult_37_years	chr16	65053820	65053880	65053820	-	RAMPAGE_only	3	3	16	0.831350	3.640224	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64998465	65046667	STRG.112922.2	-	64998465,65004641,65046328	64998856,65005041,65046667	0.750000
stomach_male_adult_37_years	chr22	44181183	44181184	44181183	+	High_confidence	6	6	8	0.415675	2.750000	chr22	44181132	44181213	LINE|L2|L2a	-	chr22	44181335	44206622	PARVG|ENST00000475485.6	+	44181335,44181741,44183317,44185807,44186576,44189113,44190550,44192048,44196156,44196346,44198620,44205756,44206316	44181370,44181917,44183408,44185872,44187878,44189254,44190666,44192129,44196213,44196415,44198722,44205829,44206622	1.000000
stomach_male_adult_37_years	chr14	81170392	81170414	81170413	-	High_confidence	4	7	21	1.091147	4.201841	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	1.000000
stomach_male_adult_37_years	chr2	95826043	95826316	95826043	-	High_confidence	73	73	304	15.795652	6.497010	chr2	95824349	95826979	LINE|L1|L1PA10	-	chr2	95807051	95826981	LINC00342|NR_103734.1	-	95807051,95814049,95824200	95807302,95814145,95826981	1.000000
stomach_male_adult_37_years	chr15	65300634	65300635	65300634	-	High_confidence	15	15	15	0.779391	3.506891	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65266576	65300618	PARP16|ENST00000558873.1	-	65266576,65270934,65282546,65300196	65266768,65271072,65282632,65300618	0.800000
stomach_male_adult_37_years	chr12	13376665	13376711	13376708	-	High_confidence	13	13	54	2.805807	4.908877	chr12	13376413	13376888	LTR|ERVL|MLT2B1	-	chr12	13371088	13376711	LINC01559|ENST00000318426.6	-	13371088,13376223,13376513	13373438,13376425,13376711	0.907407
stomach_male_adult_37_years	chr10	4981578	4981653	4981599	+	RAMPAGE_only	6	6	22	1.143106	4.106603	chr10	4981470	4981746	LINE|L1|L1PBa	+	chr10	4963252	4983283	AKR1C1|ENST00000380872.8	+	4963252,4965913,4966926,4968308,4968821,4972200,4972583,4975850,4977699	4963528,4966081,4967043,4968386,4968944,4972310,4972749,4975933,4983283	0.909091
stomach_male_adult_37_years	chr8	109581048	109581082	109581048	-	High_confidence	13	14	57	2.961685	4.379616	chr8	109580602	109581257	LINE|L2|L2c	+	chr8	109575974	109581058	SYBU|ENST00000527707.5	-	109575974,109577867,109579798,109580878	109576013,109578017,109580002,109581058	0.859649
stomach_male_adult_37_years	chr17	4736360	4736362	4736361	-	High_confidence	3	6	8	0.415675	3.000000	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	1.000000
stomach_male_adult_37_years	chr2	229232053	229232054	229232053	-	High_confidence	5	5	8	0.415675	3.000000	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.625000
stomach_male_adult_37_years	chr9	111813153	111813154	111813153	-	RAMPAGE_only	8	8	8	0.415675	2.750000	chr9	111813057	111813233	SINE|MIR|MIRb	+	chr9	111686518	111795008	C9orf84|NR_109816.1	-	111686518,111691550,111693798,111694230,111699953,111702104,111705246,111706567,111707854,111713099,111714444,111718183,111722408,111723791,111727632,111738279,111741475,111746233,111748091,111756324,111758083,111758694,111775790,111780929,111785911,111791373,111794899	111686870,111692511,111693948,111694362,111700047,111702226,111705364,111706746,111707924,111713172,111714623,111718288,111722585,111723911,111728049,111738522,111741570,111746342,111748199,111756478,111758195,111758848,111775975,111781017,111786035,111791454,111795008	0.625000
stomach_male_adult_37_years	chr3	69237176	69237186	69237182	-	RAMPAGE_only	7	7	26	1.350944	4.363713	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69169989	69386073	FRMD4B|ENST00000398540.7	-	69169989,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69195230,69196254,69196899,69198697,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69385827	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195141,69195364,69196396,69197038,69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69386073	0.538462
stomach_male_adult_37_years	chr2	230417599	230417624	230417623	+	High_confidence	3	3	6	0.311756	2.584963	chr2	230417018	230417854	LINE|L1|L1ME3G	-	chr2	230416755	230470530	SP100|ENST00000409897.5	+	230416755,230417590,230440475,230442936,230444177,230446818,230449087,230449560,230450171,230461261,230462434,230464066,230466300,230467119,230469042,230470014	230416881,230417665,230440557,230443099,230444346,230446902,230449150,230449710,230450255,230461414,230462518,230464150,230466354,230467215,230469096,230470530	1.000000
stomach_male_adult_37_years	chr5	109383494	109383498	109383497	-	High_confidence	6	6	11	0.571553	3.121928	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.909091
stomach_male_adult_37_years	chr9	133365986	133366016	133365986	-	RAMPAGE_only	2	4	15	0.779391	3.589898	chr9	133365731	133365944	DNA|TcMar-Tigger|Tigger4a	-	chr9	133363554	133375991	SURF4|ENST00000467910.5	-	133363554,133364839,133365984,133367258,133375921	133363759,133365026,133366028,133367445,133375991	0.800000
stomach_male_adult_37_years	chr3	136625270	136625271	136625270	-	RAMPAGE_only	27	27	35	1.818578	4.597276	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.828571
stomach_male_adult_37_years	chr12	118139096	118139097	118139096	+	High_confidence	7	7	7	0.363716	2.521641	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	1.000000
stomach_male_adult_37_years	chr3	98733157	98733255	98733157	+	High_confidence	4	6	45	2.338172	4.730416	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.666667
stomach_male_adult_37_years	chr7	154928503	154928506	154928503	+	High_confidence	5	5	10	0.519594	2.947703	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.800000
stomach_male_adult_37_years	chr17	59651208	59651235	59651208	+	RAMPAGE_only	3	4	18	0.935269	3.572431	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59648239	59656231	CLTC|ENST00000472129.3	+	59648239,59651202,59655853	59648401,59651316,59656231	0.666667
stomach_male_adult_37_years	chr2	240022172	240022216	240022172	-	RAMPAGE_only	20	20	68	3.533238	4.422330	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.911765
stomach_male_adult_37_years	chr4	68668631	68668635	68668634	-	RAMPAGE_only	3	3	7	0.363716	2.807355	chr4	68668491	68668867	LTR|ERVL-MaLR|THE1D	+	chr4	68646629	68670628	UGT2B15|ENST00000338206.5	-	68646629,68654036,68655094,68663007,68668039,68669894	68647383,68654256,68655182,68663139,68668188,68670628	1.000000
stomach_male_adult_37_years	chr16	19393626	19393653	19393626	-	High_confidence	3	3	14	0.727431	3.546594	chr16	19393474	19393581	LINE|L2|L2a	-	chr16	19392212	19393468	AC130456.7|ENST00000623838.1	-	19392212	19393468	0.785714
stomach_male_adult_37_years	chr14	50159440	50159441	50159440	-	RAMPAGE_only	7	8	11	0.571553	2.846439	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.909091
stomach_male_adult_37_years	chr22	24011756	24011757	24011756	+	High_confidence	8	8	8	0.415675	3.000000	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.875000
stomach_male_adult_37_years	chr16	82139688	82139709	82139688	-	High_confidence	2	3	9	0.467634	3.169925	chr16	82139255	82145258	LINE|L1|L1PA2	+	chr16	82044370	82139631	AC092142.1|ENST00000567021.1	-	82044370,82063092,82070802,82139588	82044608,82063253,82071189,82139631	0.777778
stomach_male_adult_37_years	chr2	168866637	168866638	168866637	+	High_confidence	7	7	8	0.415675	2.807355	chr2	168865486	168867268	LINE|L1|L1P1	+	chr2	168866831	168867378	STRG.20177.1	+	168866831	168867378	0.750000
stomach_male_adult_37_years	chr19	35899344	35899363	35899344	-	High_confidence	3	3	7	0.363716	2.521641	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35887951	35899737	NFKBID|NM_001321831.1	-	35887951,35889889,35890373,35895979,35896217,35896391,35896725,35896912,35897650,35898471,35898718,35899706	35888612,35890054,35890490,35896128,35896269,35896538,35896831,35897103,35897838,35898532,35898822,35899737	0.857143
stomach_male_adult_37_years	chr18	8301656	8301679	8301678	+	RAMPAGE_only	4	4	16	0.831350	3.906891	chr18	8301614	8301981	LINE|L2|L2a	-	chr18	8296375	8406856	STRG.119306.1	+	8296375,8314780,8319177,8343422,8370889,8376045,8376461,8378264,8379166,8380295,8384560,8387071,8394475,8406108	8296455,8314857,8319214,8343520,8371006,8376200,8376597,8378414,8379340,8380427,8384686,8387235,8394611,8406856	0.500000
stomach_male_adult_37_years	chr2	118143019	118143020	118143019	-	RAMPAGE_only	4	4	6	0.311756	2.584963	chr2	118137000	118143020	LINE|L1|L1PA2	-	chr2	118132127	118186386	THORLNC|ENST00000414886.5	-	118132127,118176764,118183086,118186230	118132372,118176905,118183322,118186386	0.666667
stomach_male_adult_37_years	chr19	51795157	51795177	51795157	+	High_confidence	3	3	13	0.675472	3.026987	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.846154
stomach_male_adult_37_years	chr3	132285531	132285558	132285557	-	High_confidence	7	12	39	2.026416	5.009636	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	132284113	132285670	STRG.31140.1	-	132284113,132285239	132284170,132285670	0.512821
stomach_male_adult_37_years	chr12	643627	643648	643635	-	High_confidence	8	8	28	1.454863	4.180451	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.642857
stomach_male_adult_37_years	chr2	173182199	173182220	173182199	+	RAMPAGE_only	2	2	6	0.311756	2.584963	chr2	173182099	173182382	LINE|L1|L1MB7	+	chr2	173075841	173227146	MAP3K20|ENST00000338983.7	+	173075841,173090997,173169804,173182853,173187557,173190894,173191039,173198025,173203795,173209728,173217114,173221149	173076002,173091190,173169892,173182955,173187623,173190923,173191177,173198112,173203870,173209835,173217250,173227146	1.000000
stomach_male_adult_37_years	chr19	39390094	39390115	39390094	-	High_confidence	2	2	8	0.415675	3.000000	chr19	39389937	39390046	LINE|L2|L2a	-	chr19	39389293	39391082	PAF1|ENST00000595797.5	-	39389293,39389479,39390068,39390259,39390817	39389383,39389761,39390161,39390289,39391082	0.625000
stomach_male_adult_37_years	chr5	23951359	23951388	23951359	+	High_confidence	3	3	9	0.467634	2.725481	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.888889
stomach_male_adult_37_years	chr16	28952140	28952153	28952152	+	RAMPAGE_only	6	6	10	0.519594	3.321928	chr16	28952153	28952214	DNA|hAT-Ac|OldhAT1	+	chr16	28950996	28966465	NFATC2IP|NM_032815.3	+	28950996,28952131,28954564,28955977,28956150,28958716,28958990,28963704	28951398,28952204,28954682,28956058,28956337,28958861,28959100,28966465	0.500000
stomach_male_adult_37_years	chr11	13707918	13708077	13708076	+	RAMPAGE_only	8	9	61	3.169522	5.266322	chr11	13708123	13708382	SINE|Alu|AluSx3	+	chr11	13710417	13716358	STRG.86538.6	+	13710417,13711927,13712965,13714508	13711808,13712046,13713033,13716358	0.967213
stomach_male_adult_37_years	chr19	10916761	10916764	10916761	+	RAMPAGE_only	2	2	6	0.311756	2.584963	chr19	10916771	10916976	SINE|MIR|MIR	+	chr19	10918985	10920870	CARM1|ENST00000586508.1	+	10918985,10919876,10920435,10920658,10920833	10919680,10919966,10920573,10920748,10920870	0.833333
stomach_male_adult_37_years	chr12	109053951	109053983	109053956	-	High_confidence	11	14	38	1.974457	4.426734	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.578947
stomach_male_adult_37_years	chr20	322461	322505	322504	-	High_confidence	2	3	9	0.467634	2.947703	chr20	322321	322511	LINE|L2|L2a	+	chr20	320397	322501	STRG.125186.1	-	320397,322377	320781,322501	1.000000
stomach_male_adult_37_years	chr1	32139753	32139761	32139760	+	RAMPAGE_only	4	5	8	0.415675	2.807355	chr1	32139701	32139948	LINE|L1|L1MC5	+	chr1	32142922	32162394	KPNA6|ENST00000469790.1	+	32142922,32154587,32156852,32157345,32158266,32159399,32160614,32161946,32162360	32143024,32154721,32156945,32157445,32158361,32159531,32160703,32162046,32162394	0.625000
stomach_male_adult_37_years	chr18	49872154	49872175	49872174	-	RAMPAGE_only	10	10	18	0.935269	4.087463	chr18	49871998	49872125	SINE|MIR|MIR3	-	chr18	49863261	49876283	MYO5B|ENST00000587895.1	-	49863261,49864140,49872166,49875686,49876235	49863327,49864380,49872232,49875827,49876283	0.722222
stomach_male_adult_37_years	chr3	56633832	56633858	56633832	-	High_confidence	4	5	8	0.415675	2.500000	chr3	56633796	56633877	DNA|hAT-Ac|OldhAT1	-	chr3	56620132	56633972	FAM208A|ENST00000459993.5	-	56620132,56624478,56624827,56627036,56627581,56628491,56633043	56623566,56624643,56625006,56627145,56627741,56628614,56633972	1.000000
stomach_male_adult_37_years	chr7	104940943	104940944	104940943	+	High_confidence	77	77	78	4.052832	4.938466	chr7	104939974	104941430	LTR|ERV1|LTR12C	+	chr7	104941062	104962060	AC007384.1|ENST00000415513.1	+	104941062,104961983	104941670,104962060	0.974359
stomach_male_adult_37_years	chr19	49539148	49539152	49539151	+	RAMPAGE_only	4	6	9	0.467634	2.500000	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49542652	49543566	STRG.124500.2	+	49542652,49543165	49542752,49543566	0.666667
stomach_male_adult_37_years	chr8	42320580	42320618	42320597	+	High_confidence	6	9	20	1.039188	3.884184	chr8	42320403	42320611	SINE|MIR|MIRb	-	chr8	42320705	42331609	IKBKB|ENST00000519938.5	+	42320705,42322053,42322346,42325969,42329123,42330913	42321945,42322153,42322494,42326097,42329214,42331609	0.900000
stomach_male_adult_37_years	chr7	99208118	99208134	99208118	-	High_confidence	10	13	21	1.091147	3.684184	chr7	99208098	99208244	SINE|Alu|AluSx3	-	chr7	99173573	99207506	KPNA7|ENST00000327442.6	-	99173573,99177919,99181882,99184928,99188299,99193018,99195069,99196083,99203105,99207400	99173794,99178066,99182065,99185162,99188563,99193101,99195338,99196166,99203240,99207506	0.952381
stomach_male_adult_37_years	chr15	92914930	92914974	92914973	+	High_confidence	8	9	26	1.350944	4.469670	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.807692
stomach_male_adult_37_years	chr3	57267742	57267782	57267772	+	RAMPAGE_only	6	7	27	1.402903	4.026987	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.851852
stomach_male_adult_37_years	chr7	152460665	152460677	152460665	-	RAMPAGE_only	20	20	37	1.922497	5.047291	chr7	152460557	152460804	LINE|L2|L2a	-	chr7	152286230	152436581	STRG.66128.7	-	152286230,152309965,152311797,152315137,152330600,152358586,152435625,152436511	152286376,152310075,152311946,152315338,152330739,152358675,152435787,152436581	0.675676
stomach_male_adult_37_years	chr9	129698737	129698746	129698737	+	RAMPAGE_only	4	5	11	0.571553	3.459432	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	1.000000
stomach_male_adult_37_years	chr11	64841864	64841885	64841864	-	RAMPAGE_only	2	2	8	0.415675	2.807355	chr11	64841855	64841904	SINE|MIR|MIR3	+	chr11	64823386	64844569	CDC42BPG|ENST00000342711.5	-	64823386,64826469,64826670,64827049,64827277,64827526,64827685,64829470,64830193,64831504,64832427,64832603,64832825,64833230,64833599,64833737,64833924,64834265,64834428,64834848,64835046,64835346,64835499,64835761,64836116,64836426,64836738,64836921,64838082,64838653,64839032,64839477,64840119,64840552,64841649,64841812,64844409	64824529,64826555,64826794,64827167,64827398,64827611,64827783,64830070,64830256,64831721,64832509,64832743,64832959,64833336,64833659,64833836,64833977,64834354,64834577,64834963,64835153,64835419,64835621,64835851,64836296,64836530,64836819,64837019,64838162,64838902,64839233,64839571,64840268,64840648,64841733,64841904,64844569	0.750000
stomach_male_adult_37_years	chr11	44564423	44564440	44564439	+	High_confidence	5	5	22	1.143106	3.721928	chr11	44564373	44564477	SINE|MIR|MIRc	+	chr11	44564426	44615295	CD82|ENST00000526958.5	+	44564426,44587474,44594642,44600157,44605057,44605354,44615271	44564502,44587556,44594725,44600230,44605182,44605429,44615295	0.909091
stomach_male_adult_37_years	chr17	82900641	82900677	82900641	+	High_confidence	4	4	19	0.987228	3.642150	chr17	82900147	82900642	LINE|L1|L1ME1	-	chr17	82900541	82926439	TBCD|ENST00000574422.1	+	82900541,82903404,82905935,82907760,82909284,82911757,82920555,82921500,82923651,82924938,82926399	82900731,82903478,82906053,82907821,82909307,82911789,82920618,82921577,82923733,82925057,82926439	0.947368
stomach_male_adult_37_years	chr20	18794063	18794086	18794085	+	High_confidence	31	31	88	4.572426	4.689761	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.977273
stomach_male_adult_37_years	chr16	19393734	19393735	19393734	-	High_confidence	38	38	41	2.130335	4.616349	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19392212	19393468	AC130456.7|ENST00000623838.1	-	19392212	19393468	0.609756
stomach_male_adult_37_years	chr12	74593433	74593436	74593435	+	RAMPAGE_only	6	9	12	0.623513	3.277613	chr12	74593393	74593844	LINE|L1|L1M4	+	chr12	74581767	74601593	STRG.96008.1	+	74581767,74593393,74601372	74581860,74593490,74601593	0.833333
stomach_male_adult_37_years	chr19	39168230	39168290	39168265	+	High_confidence	2	2	12	0.623513	3.251629	chr19	39168210	39168339	SINE|MIR|MIR3	-	chr19	39168610	39179406	PAK4|ENST00000360442.7	+	39168610,39169531,39172917,39173575,39174930,39175311,39176589,39177674,39178423	39168840,39169757,39173376,39174010,39175064,39175438,39176715,39177809,39179406	1.000000
stomach_male_adult_37_years	chr9	114345868	114345890	114345868	-	High_confidence	5	5	12	0.623513	3.251629	chr9	114345713	114345851	DNA|hAT-Charlie|Charlie17a	-	chr9	114336130	114346774	AKNA|ENST00000492875.1	-	114336130,114341532,114342008,114343707,114346668	114337306,114341725,114342125,114346009,114346774	1.000000
stomach_male_adult_37_years	chr5	126600248	126600249	126600248	+	High_confidence	16	16	16	0.831350	3.750000	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	1.000000
stomach_male_adult_37_years	chr3	37987981	37987994	37987989	+	High_confidence	255	276	1043	54.193637	6.636295	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.752637
stomach_male_adult_37_years	chr16	27330079	27330102	27330101	+	RAMPAGE_only	4	6	11	0.571553	3.321928	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27341288	27364777	IL4R|ENST00000170630.6	+	27341288,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27364777	0.727273
stomach_male_adult_37_years	chr7	11194703	11194724	11194708	+	RAMPAGE_only	6	12	23	1.195066	4.349649	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.608696
stomach_male_adult_37_years	chr5	134612487	134612488	134612487	-	High_confidence	8	8	9	0.467634	2.750000	chr5	134612457	134612672	SINE|Alu|AluSz6	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.888889
stomach_male_adult_37_years	chr1	23798605	23798648	23798605	-	High_confidence	2	2	9	0.467634	2.750000	chr1	23798311	23798605	SINE|Alu|AluJb	-	chr1	23797695	23799436	GALE|ENST00000467493.5	-	23797695,23798116,23798886,23799365	23797871,23798730,23799012,23799436	0.666667
stomach_male_adult_37_years	chr2	39453905	39453931	39453905	+	RAMPAGE_only	3	3	12	0.623513	2.855389	chr2	39453626	39453953	SINE|Alu|AluJo	-	chr2	39437430	39474758	AC007388.1|ENST00000445520.5	+	39437430,39453838,39454296,39474526	39437535,39453931,39454365,39474758	1.000000
stomach_male_adult_37_years	chr9	122406515	122406543	122406522	+	RAMPAGE_only	22	22	67	3.481279	5.412739	chr9	122405232	122406719	LTR|ERV1|LTR12C	-	chr9	122403406	122448977	AL359636.1|ENST00000433572.2	+	122403406,122404671,122415713,122416767,122447428,122448929	122403456,122404791,122415782,122416885,122447545,122448977	0.641791
stomach_male_adult_37_years	chr7	99208174	99208175	99208174	-	High_confidence	4	4	7	0.363716	2.584963	chr7	99208098	99208244	SINE|Alu|AluSx3	-	chr7	99173573	99207506	KPNA7|ENST00000327442.6	-	99173573,99177919,99181882,99184928,99188299,99193018,99195069,99196083,99203105,99207400	99173794,99178066,99182065,99185162,99188563,99193101,99195338,99196166,99203240,99207506	0.857143
stomach_male_adult_37_years	chr13	27445105	27445108	27445107	-	RAMPAGE_only	4	8	10	0.519594	3.169925	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.900000
stomach_male_adult_37_years	chr9	105500626	105500689	105500651	+	High_confidence	8	8	30	1.558781	3.645524	chr9	105500002	105500744	LINE|L1|L1MCa	-	chr9	105500658	105552433	FSD1L|ENST00000374707.1	+	105500658,105506398,105508616,105512806,105534492,105535066,105539262,105546357	105500763,105506608,105508715,105512936,105534593,105535318,105539351,105552433	0.966667
stomach_male_adult_37_years	chr21	44769544	44769545	44769544	-	RAMPAGE_only	5	5	8	0.415675	2.750000	chr21	44769378	44769677	SINE|Alu|AluY	-	chr21	44769039	44775436	UBE2G2|ENST00000481546.1	-	44769039,44773546	44771489,44775436	0.875000
stomach_male_adult_37_years	chr11	65434799	65434977	65434799	+	RAMPAGE_only	25	25	325	16.886800	6.008886	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.993846
stomach_male_adult_37_years	chr15	63061575	63061597	63061596	+	RAMPAGE_only	3	4	8	0.415675	2.807355	chr15	63061546	63061609	SINE|tRNA-Deu|AmnSINE2	-	chr15	63042683	63071323	TPM1|ENST00000560975.5	+	63042683,63056984,63059562,63060868,63061197,63062575,63071089	63043831,63057118,63059680,63060939,63062277,63062645,63071323	0.625000
stomach_male_adult_37_years	chr15	88635643	88635661	88635654	+	High_confidence	10	10	40	2.078375	4.977710	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303234.1	+	88635636,88636166,88639342,88652109,88655414	88635700,88636292,88639594,88652310,88656344	0.650000
stomach_male_adult_37_years	chr21	41480702	41480764	41480702	-	RAMPAGE_only	5	11	31	1.610741	4.280226	chr21	41480630	41480937	SINE|Alu|AluSx1	-	chr21	41466008	41507982	TMPRSS2|ENST00000458356.5	-	41466008,41467733,41468395,41470647,41471805,41473324,41476576,41479171,41480475,41488393,41489506,41494355,41498118,41507949	41466153,41467886,41468538,41470743,41471981,41473496,41476620,41479282,41480602,41488513,41489593,41494578,41498189,41507982	0.677419
stomach_male_adult_37_years	chr12	57532047	57532095	57532047	-	RAMPAGE_only	4	5	21	1.091147	3.684184	chr12	57531960	57532134	LINE|RTE-BovB|MamRTE1	+	chr12	57530616	57547120	DCTN2|ENST00000549394.5	-	57530616,57532014,57532212,57532571,57532732,57532983,57533237,57533952,57534291,57535055,57535483,57535748,57538252,57541363,57546027,57547027	57530775,57532106,57532315,57532643,57532810,57533022,57533303,57534097,57534452,57535154,57535545,57535845,57538347,57541372,57546096,57547120	0.666667
stomach_male_adult_37_years	chr12	91179462	91179526	91179462	-	High_confidence	1370	1417	4577	237.818097	6.977817	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.765785
stomach_male_adult_37_years	chr11	65441842	65442201	65441842	+	RAMPAGE_only	217	222	2215	115.090034	7.162409	chr11	65441504	65441864	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.995485
stomach_male_adult_37_years	chr7	11193340	11193367	11193340	+	High_confidence	7	7	17	0.883310	3.852169	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.705882
stomach_male_adult_37_years	chr10	45594289	45594316	45594315	-	High_confidence	2	2	6	0.311756	2.584963	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45461386	45594491	MARCH8|ENST00000453980.3	-	45461386,45464238,45489366,45533109,45553111,45594234	45461411,45464327,45489417,45533289,45553204,45594491	0.666667
stomach_male_adult_37_years	chr10	70425177	70425278	70425277	+	RAMPAGE_only	19	19	67	3.481279	4.294014	chr10	70424911	70425430	LTR|ERVL-MaLR|MLT1F1	-	chr10	70404378	70428618	EIF4EBP2|ENST00000373218.4	+	70404378,70419913,70421715	70404546,70420099,70428618	1.000000
stomach_male_adult_37_years	chr6	28354141	28354164	28354141	-	High_confidence	2	2	10	0.519594	2.921928	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329373	28354186	ZSCAN31|ENST00000446222.5	-	28329373,28336789,28353861,28354130	28329778,28336943,28353952,28354186	0.600000
stomach_male_adult_37_years	chr15	37921860	37921869	37921868	+	High_confidence	11	12	19	0.987228	3.572431	chr15	37919314	37922492	LINE|L1|L1PB1	-	chr15	37921938	37936918	TMCO5A|ENST00000560841.5	+	37921938,37935256,37936313,37936846	37922203,37935348,37936463,37936918	0.842105
stomach_male_adult_37_years	chr7	1440936	1440981	1440975	-	High_confidence	5	7	31	1.610741	4.306257	chr7	1440820	1440976	SINE|MIR|MIR3	+	chr7	1438924	1440727	MICALL2|ENST00000487156.1	-	1438924,1439924	1438995,1440727	0.870968
stomach_male_adult_37_years	chr15	75347039	75347082	75347042	+	High_confidence	14	14	40	2.078375	4.771928	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.575000
stomach_male_adult_37_years	chr1	6208681	6208682	6208681	-	High_confidence	158	158	159	8.261542	4.515543	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.955975
stomach_male_adult_37_years	chr1	110871186	110871201	110871198	+	High_confidence	2	2	8	0.415675	2.807355	chr1	110870731	110871665	LINE|L2|L2b	-	chr1	110871198	110899936	CD53|NM_001040033.1	+	110871198,110873155,110891391,110892344,110894326,110894959,110896652,110897808,110899123	110871259,110873248,110891471,110892533,110894401,110895055,110896733,110897892,110899936	0.625000
stomach_male_adult_37_years	chr21	33447096	33447117	33447096	-	RAMPAGE_only	4	4	11	0.571553	2.846439	chr21	33446861	33447175	SINE|Alu|AluSq2	+	chr21	33432484	33448964	TMEM50B|ENST00000484377.5	-	33432484,33436882,33439213,33448781	33432802,33436992,33439297,33448964	0.909091
stomach_male_adult_37_years	chr19	51027512	51027668	51027667	-	High_confidence	77	83	474	24.628748	7.519843	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.639241
stomach_male_adult_37_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	24	25	30	1.558781	4.375222	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155335492	155440596	STRG.7768.2	-	155335492,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155440502	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155440596	0.966667
stomach_male_adult_37_years	chr2	160195450	160195451	160195450	-	RAMPAGE_only	7	7	7	0.363716	2.807355	chr2	160195366	160195442	LINE|CR1|L3	-	chr2	160169200	160197491	STRG.19675.4	-	160169200,160172568,160173973,160195368,160196215,160197033	160169307,160172730,160174139,160195615,160196855,160197491	0.571429
stomach_male_adult_37_years	chr11	118700426	118700446	118700426	+	High_confidence	3	3	7	0.363716	2.521641	chr11	118700359	118700777	LTR|ERVL-MaLR|MLT1H	+	chr11	118700426	118708848	AP002954.1|ENST00000646572.1	+	118700426,118704607,118708381	118700643,118704838,118708848	0.571429
stomach_male_adult_37_years	chr9	39810033	39810034	39810033	-	High_confidence	9	9	12	0.623513	3.459432	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807380	39810058	GLIDR|ENST00000618092.2	-	39807380,39809730	39809633,39810058	0.500000
stomach_male_adult_37_years	chr17	50271485	50271488	50271485	+	High_confidence	105	105	191	9.924242	5.992600	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	0.989529
stomach_male_adult_37_years	chr16	20399757	20399760	20399758	-	RAMPAGE_only	43	59	85	4.416548	5.727155	chr16	20399655	20399818	LINE|CR1|L3	-	chr16	20384644	20404556	PDILT|ENST00000575561.1	-	20384644,20388786,20399098,20404495	20384851,20388909,20399307,20404556	0.752941
stomach_male_adult_37_years	chr16	761110	761115	761114	+	High_confidence	4	4	10	0.519594	2.641604	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.900000
stomach_male_adult_37_years	chr7	139566758	139566776	139566758	-	RAMPAGE_only	4	4	13	0.675472	3.546594	chr7	139566613	139566765	SINE|MIR|MIRb	+	chr7	139561646	139572728	STRG.65252.3	-	139561646,139565660	139565629,139572728	1.000000
stomach_male_adult_37_years	chr12	2608247	2608253	2608247	+	High_confidence	7	9	18	0.935269	3.260785	chr12	2608211	2608425	SINE|MIR|MIRc	-	chr12	2608549	2610680	STRG.92033.1	+	2608549,2610540	2608712,2610680	0.555556
stomach_male_adult_37_years	chr7	99410146	99410162	99410146	+	High_confidence	11	11	21	1.091147	3.721928	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.571429
stomach_male_adult_37_years	chr19	571754	571774	571754	-	High_confidence	3	3	7	0.363716	2.807355	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	1.000000
stomach_male_adult_37_years	chr9	6248470	6248471	6248470	+	RAMPAGE_only	43	43	43	2.234253	4.833014	chr9	6248331	6248575	LTR|ERVL-MaLR|MSTD	+	chr9	6241694	6257982	IL33|ENST00000456383.3	+	6241694,6250473,6251139,6253551,6254461,6255967	6241785,6250599,6251265,6253602,6254553,6257982	0.511628
stomach_male_adult_37_years	chr16	8842206	8842213	8842212	+	High_confidence	3	3	7	0.363716	2.584963	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.857143
stomach_male_adult_37_years	chr16	30729565	30729570	30729565	+	RAMPAGE_only	3	4	8	0.415675	3.000000	chr16	30729600	30729733	LINE|CR1|L3	+	chr16	30728180	30744281	STRG.112282.3	+	30728180,30733279,30733601,30733893,30734495,30736199,30736540,30737048,30741740,30743781	30729572,30733449,30733798,30734008,30734615,30736394,30736624,30740707,30741908,30744281	1.000000
stomach_male_adult_37_years	chr2	164839323	164839351	164839350	+	High_confidence	5	5	17	0.883310	3.875000	chr2	164839310	164839440	SINE|Alu|AluJr	+	chr2	164839490	164849496	STRG.20013.1	+	164839490,164848841	164839596,164849496	0.705882
stomach_male_adult_37_years	chr12	46266488	46266495	46266488	-	High_confidence	8	8	19	0.987228	3.725481	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.894737
stomach_male_adult_37_years	chr9	127451107	127451108	127451107	-	High_confidence	15	15	22	1.143106	3.916127	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.818182
stomach_male_adult_37_years	chr16	2759764	2759811	2759797	+	High_confidence	5	5	19	0.987228	3.683542	chr16	2759705	2759830	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.736842
stomach_male_adult_37_years	chr1	156252925	156252931	156252925	-	High_confidence	4	5	9	0.467634	3.000000	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.777778
stomach_male_adult_37_years	chr10	5102360	5102384	5102360	+	RAMPAGE_only	3	3	9	0.467634	3.169925	chr10	5102321	5102388	DNA|hAT-Charlie|MER5A	-	chr10	5094417	5107686	STRG.79047.3	+	5094417,5096409,5097433,5098801,5099326,5102100,5105594,5107460	5094528,5096577,5097550,5098879,5099449,5102650,5105677,5107686	0.888889
stomach_male_adult_37_years	chr5	148440515	148440518	148440515	+	RAMPAGE_only	4	4	8	0.415675	2.521641	chr5	148440564	148440673	SINE|Alu|AluJo	+	chr5	148401653	148442754	STRG.48033.1	+	148401653,148402347,148404684,148406256,148409123,148410634,148414135,148415927,148416993,148423997,148425521,148427212,148433423,148433634,148438331,148439646,148440423,148441123,148441968	148402145,148402513,148404822,148406394,148409217,148410765,148414306,148416070,148417204,148424117,148425701,148427722,148433524,148433737,148438498,148439792,148440527,148441237,148442754	0.875000
stomach_male_adult_37_years	chr20	13851425	13851434	13851425	-	High_confidence	3	3	7	0.363716	2.584963	chr20	13851304	13851476	LINE|L2|L2a	+	chr20	13849246	13851419	SEL1L2|ENST00000482196.5	-	13849246,13850190,13851323	13849604,13850319,13851419	0.857143
stomach_male_adult_37_years	chr2	112864234	112864235	112864234	-	RAMPAGE_only	68	71	86	4.468507	5.765520	chr2	112863967	112864465	LTR|ERVL|MLT2A2	-	chr2	112829750	112836903	IL1B|ENST00000263341.6	-	112829750,112831291,112832661,112833373,112835565,112836182,112836707	112830573,112831422,112832826,112833575,112835617,112836244,112836903	0.511628
stomach_male_adult_37_years	chr2	108451037	108451104	108451085	+	RAMPAGE_only	4	7	19	0.987228	4.058814	chr2	108451073	108451151	LINE|RTE-BovB|MamRTE1	-	chr2	108449883	108472899	GCC2|ENST00000409896.1	+	108449883,108451027,108452398,108468979,108469650,108472826	108449994,108451112,108452466,108469084,108472116,108472899	0.947368
stomach_male_adult_37_years	chr19	55056748	55056806	55056805	-	RAMPAGE_only	4	4	15	0.779391	3.664498	chr19	55056791	55057338	LINE|L1|L1MB7	+	chr19	55048656	55059174	RDH13|ENST00000589605.5	-	55048656,55050699,55056652,55059156	55048763,55051002,55056808,55059174	0.666667
stomach_male_adult_37_years	chr19	5680240	5680252	5680240	-	High_confidence	4	4	13	0.675472	3.584963	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.846154
stomach_male_adult_37_years	chr12	53464795	53464834	53464795	+	RAMPAGE_only	3	3	26	1.350944	4.392747	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.884615
stomach_male_adult_37_years	chr3	48979494	48979509	48979494	+	RAMPAGE_only	2	2	6	0.311756	2.584963	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	1.000000
stomach_male_adult_37_years	chr14	24423392	24423409	24423399	+	High_confidence	4	4	10	0.519594	2.725481	chr14	24422287	24423820	LINE|L2|L2b	-	chr14	24423385	24439710	STRG.101996.3	+	24423385,24430713,24431462,24432721,24432935,24436071,24436387,24437035	24423476,24430931,24432610,24432852,24433032,24436179,24436489,24439710	0.700000
stomach_male_adult_37_years	chr2	200889279	200889318	200889293	-	High_confidence	18	18	49	2.546010	4.849920	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.571429
stomach_male_adult_37_years	chr1	155954904	155954919	155954904	-	RAMPAGE_only	4	4	10	0.519594	3.169925	chr1	155954717	155954897	LINE|L1|L1ME4b	-	chr1	155947366	155952721	ARHGEF2|ENST00000368315.8	-	155947366,155950298,155950828,155950873,155951482,155951740,155951918,155952115,155952627	155948015,155950482,155950872,155951272,155951533,155951776,155951986,155952235,155952721	0.900000
stomach_male_adult_37_years	chr1	113759857	113759899	113759894	-	High_confidence	6	6	25	1.298985	4.303509	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.640000
stomach_male_adult_37_years	chr20	34369392	34369421	34369392	+	RAMPAGE_only	2	2	16	0.831350	3.875000	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.875000
stomach_male_adult_37_years	chr5	32403115	32403167	32403115	-	RAMPAGE_only	7	9	32	1.662700	4.615061	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.937500
stomach_male_adult_37_years	chr1	186357097	186357109	186357107	-	RAMPAGE_only	2	3	7	0.363716	2.584963	chr1	186357051	186357345	SINE|Alu|AluJo	-	chr1	186356119	186362381	STRG.9380.3	-	186356119,186358542,186359798,186360272,186360764,186361621,186361788,186362287	186357623,186358650,186359996,186360364,186360905,186361709,186361869,186362381	0.714286
stomach_male_adult_37_years	chr17	82081606	82081652	82081606	-	High_confidence	21	21	57	2.961685	5.195486	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079006	82081365	STRG.118889.3	-	82079006,82079356,82080139,82080369,82081163	82079280,82079608,82080238,82080922,82081365	0.982456
stomach_male_adult_37_years	chr19	49086416	49086547	49086520	+	High_confidence	37	44	145	7.534111	5.455030	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.931034
stomach_male_adult_37_years	chr19	51886854	51886881	51886880	-	High_confidence	5	5	9	0.467634	3.169925	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51880697	51886465	ZNF577|ENST00000639183.1	-	51880697,51886115	51880877,51886465	0.555556
stomach_male_adult_37_years	chr8	80485592	80485619	80485618	+	High_confidence	12	14	26	1.350944	4.220176	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.846154
stomach_male_adult_37_years	chr14	55796682	55796688	55796687	-	High_confidence	55	74	110	5.715532	6.164011	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796691	LINC00520|ENST00000649691.1	-	55781136,55793367,55794283,55796602	55782980,55793456,55794345,55796691	0.527273
stomach_male_adult_37_years	chr6	3076865	3076899	3076898	+	High_confidence	3	4	15	0.779391	3.664498	chr6	3076851	3076944	SINE|tRNA|LFSINE_Vert	-	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.733333
stomach_male_adult_37_years	chr6	2962022	2962067	2962066	-	High_confidence	6	6	20	1.039188	4.121928	chr6	2961899	2962022	SINE|Alu|AluJr	-	chr6	2948158	2962108	SERPINB6|ENST00000380524.5	-	2948158,2948913,2953043,2954591,2955523,2959167,2961893	2948699,2949069,2953186,2954709,2955670,2959342,2962108	0.600000
stomach_male_adult_37_years	chr17	8310220	8310257	8310256	+	High_confidence	2	2	6	0.311756	2.584963	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.833333
stomach_male_adult_37_years	chr1	179517545	179517569	179517545	+	RAMPAGE_only	31	33	122	6.339045	6.115492	chr1	179516075	179517979	LINE|L1|L1PB1	-	chr1	179491702	179554735	AXDND1|ENST00000484883.1	+	179491702,179492854,179509295,179525333,179528326,179532969,179533794,179534729,179554511	179491737,179492951,179509403,179525447,179528431,179533104,179533877,179534962,179554735	0.778689
stomach_male_adult_37_years	chr20	48679381	48679409	48679381	-	RAMPAGE_only	2	2	10	0.519594	3.121928	chr20	48679185	48679349	SINE|MIR|MIR	-	chr20	48632321	48660089	STRG.127333.1	-	48632321,48632495,48634675,48636462,48637695,48639765,48642167,48642406,48644408,48645850,48649299,48649995,48650893,48651395,48652585,48653360,48655289,48657039,48658135,48659918	48632391,48632639,48634775,48636683,48637752,48639894,48642258,48642489,48644497,48646057,48649576,48650206,48651055,48651583,48652706,48653497,48655375,48657188,48658228,48660089	0.900000
stomach_male_adult_37_years	chr19	10564937	10564939	10564937	-	RAMPAGE_only	6	9	10	0.519594	2.947703	chr19	10564755	10564893	SINE|MIR|MIRb	-	chr19	10553575	10565971	KRI1|ENST00000478863.5	-	10553575,10555086,10555284,10557551,10557971,10558163,10559358,10559612,10559809,10560311,10561002,10561168,10561666,10561790,10562728,10564928,10565716,10565905	10554281,10555185,10555349,10557895,10558060,10558239,10559529,10559708,10559936,10560448,10561080,10561265,10561716,10561845,10562837,10565034,10565790,10565971	0.900000
stomach_male_adult_37_years	chr19	3062924	3062983	3062924	-	High_confidence	7	10	32	1.662700	4.281728	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.937500
stomach_male_adult_37_years	chr11	71995289	71995290	71995289	+	High_confidence	5	5	7	0.363716	2.584963	chr11	71995237	71995396	SINE|MIR|MIRb	-	chr11	71995245	71996522	RNF121|ENST00000532379.1	+	71995245,71996194	71995551,71996522	0.714286
stomach_male_adult_37_years	chr15	84778197	84778199	84778198	+	High_confidence	5	6	9	0.467634	3.000000	chr15	84778174	84778672	LTR|ERV1|LTR9B	-	chr15	84778259	84802438	ZNF592|ENST00000559607.1	+	84778259,84782656,84790704,84797868,84798314,84798587,84799097,84799841,84801862	84778312,84784895,84790872,84798045,84798474,84798875,84799210,84799977,84802438	0.888889
stomach_male_adult_37_years	chr12	124355437	124355438	124355437	-	High_confidence	4	4	7	0.363716	2.584963	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124325419	124355369	STRG.98165.5	-	124325419,124326190,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836	124325583,124326370,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124355369	0.857143
stomach_male_adult_37_years	chr19	9434179	9434192	9434179	-	RAMPAGE_only	4	4	8	0.415675	2.750000	chr19	9434157	9434368	LINE|L2|L2c	+	chr19	9412603	9435193	ZNF266|ENST00000590306.5	-	9412603,9415653,9417827,9418504,9418761,9419050,9420064,9433667,9434074,9435107	9414720,9415742,9417908,9418631,9418895,9419299,9420218,9433786,9434235,9435193	0.750000
stomach_male_adult_37_years	chr1	41159746	41159788	41159787	-	High_confidence	2	2	8	0.415675	2.807355	chr1	41159678	41159745	SINE|MIR|MIRb	-	chr1	41028191	41159871	SCMH1|ENST00000456518.3	-	41028191,41028583,41037361,41046406,41048689,41070594,41075218,41142877,41159724	41028319,41028726,41037541,41046598,41048890,41070721,41075451,41143112,41159871	0.500000
stomach_male_adult_37_years	chr20	35605325	35605354	35605325	-	High_confidence	3	3	9	0.467634	2.947703	chr20	35605067	35605498	LINE|L2|L2c	+	chr20	35600698	35605326	FER1L4|ENST00000325076.9	-	35600698,35601531,35601805,35603009,35603258,35603796,35604303,35604529,35605101	35600924,35601718,35602751,35603141,35603319,35603967,35604345,35604621,35605326	0.888889
stomach_male_adult_37_years	chr1	147173203	147173250	147173249	+	High_confidence	3	3	15	0.779391	3.235926	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.800000
stomach_male_adult_37_years	chr7	92244943	92244950	92244949	-	High_confidence	4	4	8	0.415675	2.521641	chr7	92244870	92245026	DNA|hAT-Charlie|MER20B	+	chr7	92200453	92244487	STRG.62341.2	-	92200453,92201306,92213194,92213891,92214610,92221901,92222821,92225719,92226525,92234448,92234807,92235402,92236412,92240992,92242033,92244001	92200804,92201423,92213401,92213979,92214777,92222053,92222978,92225827,92226682,92234592,92234923,92235646,92237759,92241152,92242137,92244487	0.500000
stomach_male_adult_37_years	chr7	150433729	150433730	150433729	+	High_confidence	5	5	8	0.415675	3.000000	chr7	150433631	150433743	LINE|CR1|CR1_Mam	-	chr7	150433729	150442892	LINC00996|ENST00000486954.1	+	150433729,150435029,150442548	150433829,150435157,150442892	0.500000
stomach_male_adult_37_years	chr12	883791	883830	883829	+	RAMPAGE_only	5	6	15	0.779391	3.640224	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	753055	911430	STRG.91848.1	+	753055,813641,827041,830002,857160,859244,861012,862082,878211,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846,908474	754324,813814,827262,830160,857249,859464,861343,862270,878361,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,908034,911430	1.000000
stomach_male_adult_37_years	chr1	17624220	17624221	17624220	+	High_confidence	7	7	7	0.363716	2.521641	chr1	17624115	17624252	SINE|MIR|MIR3	+	chr1	17623868	17640349	STRG.1041.2	+	17623868,17625955,17627329,17632320,17634547,17634834,17637887,17638561,17640201	17624503,17626048,17627503,17632466,17634562,17635016,17638003,17638689,17640349	0.857143
stomach_male_adult_37_years	chr11	100715407	100715410	100715407	+	RAMPAGE_only	10	10	19	0.987228	3.836592	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.736842
stomach_male_adult_37_years	chr14	93287960	93287965	93287963	-	RAMPAGE_only	4	8	13	0.675472	3.251629	chr14	93287420	93288167	LINE|L1|HAL1	-	chr14	93287671	93296158	BTBD7|ENST00000555525.1	-	93287671,93293857,93295969	93288730,93294937,93296158	0.846154
stomach_male_adult_37_years	chr12	6356255	6356278	6356277	-	High_confidence	7	8	17	0.883310	3.248365	chr12	6356219	6356436	LINE|L2|L2b	+	chr12	6355391	6356293	SCNN1A|ENST00000536087.1	-	6355391,6355776	6355435,6356293	0.882353
stomach_male_adult_37_years	chr1	16017941	16017956	16017955	-	High_confidence	5	7	10	0.519594	2.646439	chr1	16017886	16017984	LINE|CR1|L3	+	chr1	16015498	16018005	HSPB7|ENST00000406363.2	-	16015498,16017073,16017764	16015759,16017219,16018005	0.800000
stomach_male_adult_37_years	chr7	7566038	7566039	7566038	-	High_confidence	5	6	7	0.363716	2.584963	chr7	7565778	7566082	SINE|Alu|AluSc	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.714286
stomach_male_adult_37_years	chr2	238300015	238300086	238300064	-	High_confidence	49	50	159	8.261542	6.226851	chr2	238299957	238300152	LTR|ERVL|ERV3-16A3_I-int	+	chr2	238298366	238300004	STRG.23448.1	-	238298366,238299801	238298776,238300004	0.685535
stomach_male_adult_37_years	chrX	53576941	53576960	53576959	-	RAMPAGE_only	3	4	9	0.467634	2.750000	chrX	53576946	53576998	LTR|ERV1|LTR43-int	+	chrX	53561730	53604880	STRG.132976.3	-	53561730,53562110,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602563,53603367,53604588	53561924,53562244,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604880	0.888889
stomach_male_adult_37_years	chr21	39657326	39657337	39657326	+	High_confidence	10	10	29	1.506822	4.017825	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657326	39662889	B3GALT5|ENST00000380618.5	+	39657326,39659752,39660559	39657599,39659912,39662889	0.793103
stomach_male_adult_37_years	chr2	9422801	9422818	9422817	-	High_confidence	5	5	12	0.623513	3.584963	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NM_001319068.1	-	9405680,9407448,9408112,9412268,9414177,9418625,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9422660	0.583333
stomach_male_adult_37_years	chr1	48373868	48373880	48373868	-	RAMPAGE_only	4	4	9	0.467634	3.000000	chr1	48373603	48373950	LTR|ERVL-MaLR|THE1A	-	chr1	48297836	48472010	SPATA6|ENST00000371843.7	-	48297836,48305786,48355717,48359585,48385308,48395266,48399350,48403801,48411463,48413109,48451551,48452993,48471957	48298893,48305878,48355769,48359770,48385349,48395354,48399644,48403882,48411588,48413151,48451600,48453131,48472010	0.555556
stomach_male_adult_37_years	chr17	41871736	41871763	41871745	-	RAMPAGE_only	4	4	17	0.883310	3.702820	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.882353
stomach_male_adult_37_years	chr9	33068829	33068852	33068829	-	RAMPAGE_only	2	2	9	0.467634	3.000000	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.777778
stomach_male_adult_37_years	chr19	48868595	48868617	48868613	-	High_confidence	344	389	1601	83.186972	7.577301	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.991255
stomach_male_adult_37_years	chr11	65429787	65429854	65429831	+	RAMPAGE_only	135	157	880	45.724257	6.554225	chr11	65429592	65429862	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998864
stomach_male_adult_37_years	chr2	171231287	171231296	171231295	-	High_confidence	9	9	24	1.247025	4.095795	chr2	171231092	171231479	LTR|ERVL-MaLR|MLT1C	-	chr2	170990822	171231314	TLK1|NM_001136554.1	-	170990822,170996652,170997711,171006146,171006473,171006799,171006971,171011372,171014850,171028338,171046173,171049813,171050063,171053760,171055082,171056470,171058150,171061080,171082780,171117738,171231144	170993956,170996760,170997823,171006282,171006643,171006889,171007063,171011454,171014948,171028405,171046362,171049950,171050174,171053853,171055172,171056566,171058197,171061156,171082852,171117857,171231314	0.791667
stomach_male_adult_37_years	chr9	39810075	39810099	39810098	-	High_confidence	3	3	8	0.415675	2.750000	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39777349	39810097	GLIDR|ENST00000638724.1	-	39777349,39778893,39809485,39809730	39778566,39778944,39809615,39810097	0.625000
stomach_male_adult_37_years	chr16	67183531	67183572	67183549	-	High_confidence	4	4	13	0.675472	3.251629	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67176729	67183941	KIAA0895L|ENST00000563902.1	-	67176729,67178009,67178198,67179429,67179814,67180040,67183261	67176975,67178107,67178504,67179562,67179958,67180666,67183941	0.692308
stomach_male_adult_37_years	chr5	154409619	154409639	154409619	+	RAMPAGE_only	2	4	8	0.415675	3.000000	chr5	154409601	154409687	LINE|L1|L1PREC2	+	chr5	154403776	154419033	GALNT10|ENST00000517958.1	+	154403776,154409540,154412888,154415782,154416813	154404216,154409762,154413005,154415932,154419033	0.875000
stomach_male_adult_37_years	chr12	101743830	101743853	101743852	+	RAMPAGE_only	2	2	8	0.415675	2.750000	chr12	101743709	101744011	SINE|Alu|AluJb	+	chr12	101739577	101744010	CHPT1|ENST00000552213.1	+	101739577,101742396,101743714	101739769,101742506,101744010	0.500000
stomach_male_adult_37_years	chr18	80148048	80148049	80148048	+	High_confidence	16	16	16	0.831350	3.875000	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.500000
stomach_male_adult_37_years	chr2	86695073	86695101	86695073	-	RAMPAGE_only	3	3	10	0.519594	3.121928	chr2	86695006	86695595	LTR|ERV1|LTR10A	+	chr2	86620229	86621061	STRG.16371.4	-	86620229,86620764	86620469,86621061	0.600000
stomach_male_adult_37_years	chr2	203082962	203082993	203082962	+	High_confidence	5	5	11	0.571553	3.321928	chr2	203082717	203083034	LTR|ERVL-MaLR|MLT1J	-	chr2	203083236	203219874	STRG.21843.2	+	203083236,203084462,203097546,203099628,203107419,203107607,203110149,203111978,203113014,203115984,203122253,203125351,203125959,203126556,203126823,203127780,203130317,203131972,203133057,203135676,203136598,203138161,203138619,203144599,203145010,203148990,203151464,203157698,203166148,203167226,203169746,203171927,203172728,203175146,203180381,203183278,203188471,203190291,203193794,203197301,203199337,203201542,203202686,203208636,203209160,203210957,203213517,203217252	203083525,203084569,203097633,203099712,203107518,203108188,203110282,203112098,203113318,203116070,203122343,203125520,203126093,203126716,203126926,203127937,203130476,203132132,203133146,203136252,203136774,203138315,203138748,203144905,203145160,203149148,203151589,203157825,203166297,203167360,203169851,203172023,203172853,203175287,203180512,203183388,203188589,203190389,203193911,203197391,203199447,203201715,203202781,203208753,203209322,203211106,203213653,203219874	0.818182
stomach_male_adult_37_years	chr1	64007079	64007080	64007079	+	RAMPAGE_only	7	7	11	0.571553	3.277613	chr1	64007065	64007141	SINE|MIR|MIRc	+	chr1	64009302	64181492	ROR1|ENST00000545203.2	+	64009302,64049690,64050685,64137368,64140108,64142404,64158980,64177427	64009376,64049978,64050716,64137496,64140426,64142650,64159192,64181492	0.545455
stomach_male_adult_37_years	chr1	26284538	26284539	26284538	-	RAMPAGE_only	5	5	7	0.363716	2.521641	chr1	26284514	26284630	SINE|MIR|MIR3	-	chr1	26282304	26298026	UBXN11|ENST00000496466.1	-	26282304,26282648,26282863,26284141,26284361,26285822,26294204,26296918,26297426,26297961	26282569,26282789,26282937,26284281,26285541,26286037,26294331,26296995,26297481,26298026	0.571429
stomach_male_adult_37_years	chr6	30830607	30830641	30830627	-	High_confidence	4	5	19	0.987228	4.037401	chr6	30830591	30830730	LTR|Gypsy|MamGypLTR1b	-	chr6	30812865	30830659	LINC00243|NR_130726.1	-	30812865,30830514	30814772,30830659	0.526316
stomach_male_adult_37_years	chr12	10710653	10710654	10710653	-	High_confidence	8	8	9	0.467634	2.750000	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.888889
stomach_male_adult_37_years	chr7	37353636	37353674	37353636	-	High_confidence	21	21	51	2.649929	4.701468	chr7	37353223	37353900	LTR|ERV1|LTR12_	-	chr7	36852905	37353668	ELMO1|NM_001206482.1	-	36852905,36861658,36870392,36878009,36887559,36894853,37013298,37096618,37133129,37211385,37213334,37216644,37222614,37224878,37233094,37244355,37259180,37271831,37314849,37315919,37342612,37353031	36855751,36861736,36870475,36878117,36887672,36895017,37013435,37096727,37133234,37211517,37213457,37216695,37222693,37225030,37233194,37244391,37259350,37271882,37314922,37315960,37342763,37353668	0.980392
stomach_male_adult_37_years	chr22	23705483	23705505	23705502	-	RAMPAGE_only	2	2	8	0.415675	2.521641	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23694001	23709306	STRG.129632.4	-	23694001,23697882,23700725,23705428,23709129	23695517,23697999,23700845,23705541,23709306	0.750000
stomach_male_adult_37_years	chr14	102235405	102235426	102235405	-	High_confidence	2	2	8	0.415675	2.750000	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.625000
stomach_male_adult_37_years	chr1	171251836	171251857	171251836	-	High_confidence	3	3	9	0.467634	3.169925	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171247579	171251794	AL445673.1|ENST00000455124.2	-	171247579,171251522	171247723,171251794	0.888889
stomach_male_adult_37_years	chr12	12826029	12826068	12826054	+	RAMPAGE_only	2	2	8	0.415675	2.807355	chr12	12826088	12826293	SINE|MIR|MIRb	+	chr12	12813357	12829981	DDX47|ENST00000542123.5	+	12813357,12814130,12821654,12821964,12822660,12823202,12825999,12827245,12829422	12813454,12814224,12821726,12822083,12822732,12824677,12826070,12827375,12829981	0.750000
stomach_male_adult_37_years	chr16	27330147	27330172	27330171	+	RAMPAGE_only	5	5	13	0.675472	2.873141	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27341288	27364777	IL4R|ENST00000170630.6	+	27341288,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27364777	0.769231
stomach_male_adult_37_years	chr5	66690248	66690257	66690253	+	RAMPAGE_only	3	4	12	0.623513	2.845351	chr5	66690063	66690260	SINE|MIR|MIRc	+	chr5	66596360	67169595	MAST4|ENST00000403625.6	+	66596360,66759708,66788669,66899950,67054403,67090161,67095596,67100434,67102535,67104365,67110097,67114086,67118681,67121016,67130209,67131812,67133513,67134522,67136562,67142114,67142420,67144668,67145143,67149388,67152636,67153457,67160455,67162606,67163146	66597018,66759862,66788794,66899982,67054492,67090231,67095675,67100592,67102611,67104575,67110199,67114219,67118749,67121102,67130418,67131951,67133646,67134688,67136664,67142237,67142533,67144796,67145379,67149589,67152866,67153580,67160592,67162788,67169595	0.583333
stomach_male_adult_37_years	chr14	53217918	53217926	53217918	+	High_confidence	3	3	11	0.571553	3.277613	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217890	53369501	AL365295.1|ENST00000435322.1	+	53217890,53304807,53318030,53369454	53218055,53305053,53318138,53369501	0.727273
stomach_male_adult_37_years	chr19	48637361	48637368	48637367	-	High_confidence	9	9	16	0.831350	3.750000	chr19	48637310	48637367	LINE|L1|X9_LINE	+	chr19	48633085	48637363	DBP|ENST00000601104.1	-	48633085,48635579,48636855	48633655,48635990,48637363	0.937500
stomach_male_adult_37_years	chr1	32768074	32768096	32768074	+	High_confidence	4	4	14	0.727431	3.546594	chr1	32768079	32768253	SINE|MIR|MIR3	+	chr1	32767663	32771362	STRG.1767.5	+	32767663,32768041,32768651,32769672,32769879	32767957,32768117,32768775,32769786,32771362	0.928571
stomach_male_adult_37_years	chr14	81192654	81192702	81192654	-	High_confidence	8	8	50	2.597969	4.838563	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81177581	81192754	STRG.104666.2	-	81177581,81185530,81192518	81180330,81185620,81192754	0.980000
stomach_male_adult_37_years	chr3	33838228	33838281	33838256	+	RAMPAGE_only	16	16	49	2.546010	4.860902	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.714286
stomach_male_adult_37_years	chr4	4269605	4269614	4269609	-	High_confidence	22	24	79	4.104791	3.720652	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.936709
stomach_male_adult_37_years	chr11	4129116	4129136	4129116	+	High_confidence	3	3	7	0.363716	2.584963	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4129077	4138815	STRG.85778.1	+	4129077,4132285,4133562,4135081,4138194	4129150,4132421,4133658,4135270,4138815	0.857143
stomach_male_adult_37_years	chr2	113184962	113185066	113185065	+	High_confidence	6	6	45	2.338172	4.922750	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.911111
stomach_male_adult_37_years	chrX	5726193	5726194	5726193	-	High_confidence	12	12	13	0.675472	3.188722	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5725855	5726177	STRG.131210.1	-	5725855	5726177	0.769231
stomach_male_adult_37_years	chr6	34720153	34720174	34720157	-	RAMPAGE_only	3	4	13	0.675472	3.700440	chr6	34719459	34720428	LTR|ERVK|LTR5_Hs	-	chr6	34587279	34696850	C6orf106|NM_024294.3	-	34587279,34606554,34646600,34654624,34696445	34590600,34606904,34646798,34654779,34696850	0.538462
stomach_male_adult_37_years	chr1	220090402	220090421	220090412	-	High_confidence	5	5	18	0.935269	3.683542	chr1	220090323	220090490	SINE|Alu|AluJr	-	chr1	220057483	220090462	BPNT1|ENST00000469520.6	-	220057483,220059685,220062756,220067301,220069383,220072849,220073966,220079726,220089685,220090286	220058992,220059791,220062954,220067393,220069432,220072957,220074071,220079854,220089951,220090462	0.944444
stomach_male_adult_37_years	chr14	73366903	73366931	73366930	-	High_confidence	2	2	7	0.363716	2.584963	chr14	73366875	73367023	SINE|MIR|MIRb	+	chr14	73276548	73366920	NUMB|ENST00000560335.5	-	73276548,73282358,73287109,73292733,73297210,73316389,73323129,73355625,73366896	73277293,73282505,73287314,73292874,73297285,73316422,73323204,73355766,73366920	0.857143
stomach_male_adult_37_years	chr11	58578102	58578133	58578102	-	High_confidence	24	28	123	6.391004	6.136876	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.593496
stomach_male_adult_37_years	chr6	11728395	11728446	11728439	-	High_confidence	2	2	10	0.519594	2.947703	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.500000
stomach_male_adult_37_years	chr12	46243291	46243308	46243307	-	RAMPAGE_only	4	6	10	0.519594	3.121928	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	1.000000
stomach_male_adult_37_years	chr21	42524975	42524978	42524975	+	RAMPAGE_only	2	2	7	0.363716	2.584963	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42514413	42581231	STRG.129066.2	+	42514413,42518276,42525775,42534356,42535471,42539511,42542403,42543435,42547102,42554061,42558957,42562077,42563814,42564707,42565826,42566984,42568359,42574817,42579735,42580344	42514717,42518510,42525857,42534830,42535550,42539647,42542480,42543602,42547140,42554142,42559089,42562168,42563877,42564793,42565875,42567058,42568438,42574915,42579800,42581231	0.571429
stomach_male_adult_37_years	chr11	67999518	67999575	67999556	-	High_confidence	3	4	13	0.675472	3.546594	chr11	67999398	67999517	SINE|MIR|MIR3	-	chr11	67991103	67999194	UNC93B1|ENST00000610659.4	-	67991103,67996771,67997674,67998358,67999172	67991362,67996784,67997799,67998452,67999194	0.923077
subcutaneous_adipose_tissue_female_adult_51_years	chr1	21875639	21875718	21875640	-	High_confidence	12	21	48	3.952346	4.980389	chr1	21875470	21875616	SINE|MIR|MIRb	-	chr1	21874477	21875208	HSPG2|ENST00000498495.1	-	21874477,21874615,21874890	21874533,21874729,21875208	0.645833
subcutaneous_adipose_tissue_female_adult_51_years	chr7	11253112	11253113	11253112	+	High_confidence	18	18	18	1.482130	3.947703	chr7	11252764	11253207	LTR|ERVL|LTR40b	-	chr7	11253112	11385678	AC004160.1|ENST00000421121.5	+	11253112,11379286,11383796	11253225,11379369,11385678	0.666667
subcutaneous_adipose_tissue_female_adult_51_years	chr9	111284874	111284875	111284874	-	High_confidence	104	105	137	11.280654	5.658866	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.912409
subcutaneous_adipose_tissue_female_adult_51_years	chr11	62600209	62600242	62600209	-	High_confidence	2	2	8	0.658724	2.500000	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr9	20658312	20658339	20658338	+	High_confidence	4	4	13	1.070427	3.392747	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.769231
subcutaneous_adipose_tissue_female_adult_51_years	chr7	134549109	134549129	134549109	+	High_confidence	6	6	13	1.070427	3.392747	chr7	134549070	134551552	LTR|ERV1|HERVS71-int	+	chr7	134549096	134579840	AKR1B15|NM_001080538.2	+	134549096,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579840	0.538462
subcutaneous_adipose_tissue_female_adult_51_years	chr15	65244454	65244455	65244454	-	RAMPAGE_only	12	12	14	1.152768	3.546594	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.857143
subcutaneous_adipose_tissue_female_adult_51_years	chr5	180815366	180815414	180815413	-	High_confidence	7	7	18	1.482130	3.381580	chr5	180815320	180815494	LINE|L2|L2	+	chr5	180814894	180815641	STRG.41012.9	-	180814894,180815413	180815282,180815641	0.888889
subcutaneous_adipose_tissue_female_adult_51_years	chr11	65429787	65430094	65429787	+	RAMPAGE_only	12	14	219	18.032578	6.380945	chr11	65429592	65429862	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr9	39810033	39810034	39810033	-	High_confidence	6	6	8	0.658724	2.750000	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr14	77076188	77076194	77076193	-	High_confidence	23	23	57	4.693411	5.331271	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77073973	77076353	STRG.88800.1	-	77073973,77076104	77074598,77076353	0.614035
subcutaneous_adipose_tissue_female_adult_51_years	chr1	56547865	56547898	56547865	-	RAMPAGE_only	7	7	16	1.317449	3.456565	chr1	56547797	56547973	SINE|MIR|MIRb	+	chr1	56494746	56554284	STRG.2793.3	-	56494746,56511975,56523822,56524276	56496676,56512152,56523880,56554284	0.937500
subcutaneous_adipose_tissue_female_adult_51_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	22	22	29	2.387876	4.004364	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155441073	STRG.6249.4	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155440502	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155441073	0.655172
subcutaneous_adipose_tissue_female_adult_51_years	chr16	87381469	87381509	87381469	-	RAMPAGE_only	4	4	17	1.399789	3.616875	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87327023	87383751	STRG.96310.1	-	87327023,87333885,87335303,87336154,87342876,87343597,87347173,87360294,87367372,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87360366,87367945,87383751	0.764706
subcutaneous_adipose_tissue_female_adult_51_years	chr12	47753900	47753962	47753961	+	High_confidence	5	5	30	2.470216	4.440224	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47753929	47756485	SLC48A1|ENST00000552003.1	+	47753929,47755701	47754027,47756485	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	8681676	8681677	8681676	+	High_confidence	170	172	229	18.855984	6.870588	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.733624
subcutaneous_adipose_tissue_female_adult_51_years	chr2	227534915	227534941	227534932	+	RAMPAGE_only	10	12	30	2.470216	4.494680	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.800000
subcutaneous_adipose_tissue_female_adult_51_years	chr7	2242922	2242923	2242922	+	High_confidence	9	9	9	0.741065	2.725481	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.888889
subcutaneous_adipose_tissue_female_adult_51_years	chr12	32601284	32601314	32601284	+	RAMPAGE_only	3	3	9	0.741065	2.500000	chr12	32601190	32601318	SINE|MIR|MIRb	-	chr12	32598246	32611291	STRG.79466.4	+	32598246,32600409,32601277,32602160,32607956,32610775,32611136	32598586,32600509,32601423,32602317,32608095,32610834,32611291	0.888889
subcutaneous_adipose_tissue_female_adult_51_years	chr17	4736361	4736391	4736361	-	High_confidence	5	6	17	1.399789	3.499228	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr16	89672746	89672772	89672758	+	High_confidence	3	4	13	1.070427	3.392747	chr16	89672500	89673437	LTR|ERV1|MER4-int	+	chr16	89673254	89685702	STRG.96480.1	+	89673254,89682313,89685668	89673293,89682496,89685702	0.615385
subcutaneous_adipose_tissue_female_adult_51_years	chr9	104906070	104906119	104906070	-	RAMPAGE_only	5	5	15	1.235108	3.324863	chr9	104905864	104906087	SINE|MIR|MIRb	+	chr9	104861437	104928139	ABCA1|ENST00000374733.1	-	104861437,104883038,104884426,104889101,104927934	104861800,104883157,104884568,104889195,104928139	0.866667
subcutaneous_adipose_tissue_female_adult_51_years	chr6	35672735	35672758	35672757	-	RAMPAGE_only	6	6	13	1.070427	3.180833	chr6	35672643	35672949	SINE|Alu|AluY	+	chr6	35573589	35656789	STRG.42724.3	-	35573589,35576993,35580035,35586931,35591129,35597247,35619095,35620131,35637013,35642719,35646162	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35643348,35656789	0.846154
subcutaneous_adipose_tissue_female_adult_51_years	chr7	99679899	99679926	99679912	-	High_confidence	7	7	21	1.729151	3.681881	chr7	99679672	99679870	SINE|MIR|MIRc	-	chr7	99648197	99679988	CYP3A5|ENST00000461920.5	-	99648197,99650072,99652552,99660498,99662815,99663967,99665165,99666600,99666951,99672579,99672783,99674532,99676114,99679825	99648400,99650232,99652779,99660659,99662882,99664095,99665314,99666689,99667065,99672679,99672915,99674585,99676576,99679988	0.619048
subcutaneous_adipose_tissue_female_adult_51_years	chr22	50785220	50785223	50785220	+	RAMPAGE_only	3	3	8	0.658724	2.750000	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr19	9709659	9709660	9709659	+	High_confidence	29	29	31	2.552557	4.418157	chr19	9709309	9709779	LTR|ERV1|LTR10A	+	chr19	9709673	9721050	STRG.103584.1	+	9709673,9719542	9709992,9721050	0.870968
subcutaneous_adipose_tissue_female_adult_51_years	chr5	77088090	77088101	77088090	+	High_confidence	3	3	10	0.823405	3.169925	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	161599631	161599651	161599635	+	High_confidence	4	4	11	0.905746	2.845351	chr1	161599475	161599694	LTR|ERV1|MER57-int	+	chr1	161599570	161605137	FCGR2C|ENST00000508651.1	+	161599570,161601239,161604942	161599792,161601364,161605137	0.818182
subcutaneous_adipose_tissue_female_adult_51_years	chrX	48683362	48683363	48683362	+	High_confidence	11	17	17	1.399789	3.130718	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	45292796	45292838	45292825	+	High_confidence	2	2	8	0.658724	2.807355	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	161517978	161518032	161518031	+	RAMPAGE_only	4	4	16	1.317449	3.773557	chr1	161517820	161518039	LTR|ERV1|MER57-int	+	chr1	161514619	161518603	FCGR2A|ENST00000486608.1	+	161514619,161517974	161514874,161518603	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr11	64242419	64242547	64242546	+	High_confidence	11	11	58	4.775751	5.267211	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr9	110170594	110170696	110170695	+	RAMPAGE_only	60	60	171	14.080232	5.824094	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr9	98943562	98943578	98943575	+	High_confidence	13	14	30	2.470216	4.521641	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.933333
subcutaneous_adipose_tissue_female_adult_51_years	chr2	240022172	240022216	240022172	-	RAMPAGE_only	2	2	11	0.905746	3.121928	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.909091
subcutaneous_adipose_tissue_female_adult_51_years	chr9	33393986	33394067	33394066	-	High_confidence	9	10	28	2.305535	4.402674	chr9	33394009	33394115	LINE|L2|L2b	+	chr9	33385505	33394176	AQP7|ENST00000447660.3	-	33385505,33386076,33386403,33393796	33385866,33386195,33386541,33394176	0.892857
subcutaneous_adipose_tissue_female_adult_51_years	chr18	46087042	46087119	46087065	-	High_confidence	5	7	27	2.223195	4.310443	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.962963
subcutaneous_adipose_tissue_female_adult_51_years	chrX	53585017	53585060	53585017	-	RAMPAGE_only	4	4	19	1.564470	3.794653	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.947368
subcutaneous_adipose_tissue_female_adult_51_years	chr7	80594659	80594672	80594671	+	High_confidence	2	2	7	0.576384	2.584963	chr7	80594543	80594710	LINE|RTE-X|L4_C_Mam	+	chr7	80594494	80597918	STRG.53461.1	+	80594494	80597918	0.571429
subcutaneous_adipose_tissue_female_adult_51_years	chr2	201790552	201790590	201790589	+	High_confidence	4	4	9	0.741065	2.947703	chr2	201790433	201790802	LINE|L2|L2-3_Crp	-	chr2	201790460	201876583	CDK15|ENST00000451080.5	+	201790460,201800783,201806428,201807493,201807852,201812482,201822808,201823664,201833847,201835642,201847380,201854873,201872277,201876523	201790660,201800901,201806547,201807643,201807952,201812562,201822903,201823727,201833971,201835763,201847474,201854937,201872326,201876583	0.666667
subcutaneous_adipose_tissue_female_adult_51_years	chr1	46952248	46952277	46952276	+	RAMPAGE_only	5	5	11	0.905746	3.095795	chr1	46951890	46952393	LTR|ERV1|LTR17	+	chr1	46950629	46967609	STRG.2211.1	+	46950629	46967609	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	70947322	70947396	70947349	+	RAMPAGE_only	18	20	62	5.105113	5.175734	chr1	70947197	70947555	LTR|ERVL-MaLR|THE1A	+	chr1	70961054	70965992	STRG.3409.1	+	70961054,70964845	70961258,70965992	0.903226
subcutaneous_adipose_tissue_female_adult_51_years	chr12	55710309	55710359	55710309	+	RAMPAGE_only	3	3	18	1.482130	2.822182	chr12	55710078	55710380	SINE|Alu|AluSx1	+	chr12	55716033	55719707	BLOC1S1|NR_037655.1	+	55716033,55719090,55719498	55716196,55719223,55719707	0.833333
subcutaneous_adipose_tissue_female_adult_51_years	chr7	131108707	131108708	131108707	-	RAMPAGE_only	10	10	11	0.905746	3.321928	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944159	131109916	LINC-PINT|NR_109854.1	-	130944159,130945719,130984052,131052424,131107719,131109736	130944889,130945791,130984109,131052555,131108803,131109916	0.909091
subcutaneous_adipose_tissue_female_adult_51_years	chr20	44738992	44738993	44738992	-	High_confidence	6	7	9	0.741065	2.503258	chr20	44738735	44739078	LTR|ERVL-MaLR|MLT1J2	-	chr20	44694891	44738896	KCNK15-AS1|ENST00000427598.5	-	44694891,44716624,44738819	44695507,44716793,44738896	0.777778
subcutaneous_adipose_tissue_female_adult_51_years	chr14	102947726	102947738	102947726	-	RAMPAGE_only	3	3	9	0.741065	2.750000	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.666667
subcutaneous_adipose_tissue_female_adult_51_years	chr12	8663176	8663181	8663176	-	High_confidence	6	6	15	1.235108	2.599581	chr12	8663102	8663238	SINE|Alu|AluSq2	-	chr12	8651728	8662888	MFAP5|ENST00000538107.5	-	8651728,8654436,8655414,8655785,8660862,8662046,8662626	8651773,8654481,8655447,8655830,8660898,8662106,8662888	0.666667
subcutaneous_adipose_tissue_female_adult_51_years	chr21	28048446	28048447	28048446	+	High_confidence	15	16	19	1.564470	3.576618	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.947368
subcutaneous_adipose_tissue_female_adult_51_years	chr22	44181165	44181184	44181183	+	High_confidence	7	7	13	1.070427	3.085055	chr22	44181132	44181213	LINE|L2|L2a	-	chr22	44181335	44206622	PARVG|ENST00000475485.6	+	44181335,44181741,44183317,44185807,44186576,44189113,44190550,44192048,44196156,44196346,44198620,44205756,44206316	44181370,44181917,44183408,44185872,44187878,44189254,44190666,44192129,44196213,44196415,44198722,44205829,44206622	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr16	55636702	55636703	55636702	+	RAMPAGE_only	10	10	10	0.823405	3.121928	chr16	55636498	55636760	SINE|Alu|AluSz	+	chr16	56632232	56633986	MT1M|ENST00000379818.3	+	56632232,56633339,56633750	56632759,56633405,56633986	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr4	128570452	128570488	128570487	-	High_confidence	3	3	10	0.823405	2.947703	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.900000
subcutaneous_adipose_tissue_female_adult_51_years	chr2	72693353	72693354	72693353	-	RAMPAGE_only	28	29	32	2.634897	3.714409	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.812500
subcutaneous_adipose_tissue_female_adult_51_years	chr19	3062922	3062988	3062922	-	High_confidence	8	9	32	2.634897	4.038910	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr11	123061128	123061281	123061256	-	High_confidence	186	190	489	40.264524	6.238368	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.973415
subcutaneous_adipose_tissue_female_adult_51_years	chr1	70974343	70974379	70974343	-	RAMPAGE_only	4	4	12	0.988086	3.418296	chr1	70974290	70974411	SINE|tRNA|LFSINE_Vert	+	chr1	70852572	71047633	PTGER3|ENST00000460330.5	-	70852572,70953762,71012304,71046680	70852859,70953789,71012484,71047633	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr2	43486690	43486717	43486716	-	High_confidence	9	9	16	1.317449	3.250000	chr2	43486640	43486924	DNA|hAT-Charlie|MER102b	-	chr2	43397720	43486831	STRG.11544.9	-	43397720,43428099,43430212,43485233,43486436	43398139,43428231,43430302,43485325,43486831	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr11	119007887	119007914	119007909	+	High_confidence	8	11	23	1.893832	3.061482	chr11	119007813	119008101	LTR|ERVL|LTR75	-	chr11	119007416	119009463	STRG.76940.1	+	119007416	119009463	0.956522
subcutaneous_adipose_tissue_female_adult_51_years	chr15	89665492	89665718	89665531	-	RAMPAGE_only	33	33	223	18.361940	6.467799	chr15	89665137	89665552	DNA|TcMar-Mariner|MARNA	-	chr15	89664364	89679402	PLIN1|ENST00000300055.9	-	89664364,89666935,89667601,89669499,89669979,89671481,89673209,89677444,89679250	89665942,89667181,89667793,89669672,89670244,89671564,89673414,89677503,89679402	0.991031
subcutaneous_adipose_tissue_female_adult_51_years	chr5	67798680	67798683	67798682	-	High_confidence	77	114	120	9.880865	5.787836	chr5	67798510	67798862	LTR|ERVL-MaLR|THE1B	-	chr5	67722702	67798660	STRG.36383.2	-	67722702,67798592	67724088,67798660	0.741667
subcutaneous_adipose_tissue_female_adult_51_years	chr5	170267323	170267408	170267407	-	High_confidence	10	10	59	4.858092	5.223155	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170256556	170267327	LCP2|ENST00000520344.1	-	170256556,170258036,170258865,170261106,170262634,170262841,170262966,170267008	170256575,170258166,170258878,170261137,170262742,170262861,170262992,170267327	0.762712
subcutaneous_adipose_tissue_female_adult_51_years	chr3	134485443	134485490	134485470	-	High_confidence	7	7	38	3.128941	4.145972	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.815789
subcutaneous_adipose_tissue_female_adult_51_years	chrX	16712889	16712933	16712889	-	High_confidence	3	3	7	0.576384	2.807355	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr5	109383446	109383465	109383462	-	High_confidence	8	9	27	2.223195	3.986188	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr20	35732358	35732390	35732358	-	High_confidence	5	5	25	2.058513	3.703465	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr9	127642428	127642441	127642428	+	High_confidence	8	8	17	1.399789	3.452820	chr9	127642433	127642559	LINE|CR1|L3	+	chr9	127642342	127663258	STXBP1|ENST00000626333.1	+	127642342,127651602,127653714,127658374,127660029,127661101,127663204	127642563,127651652,127653796,127658451,127660108,127661205,127663258	0.941176
subcutaneous_adipose_tissue_female_adult_51_years	chr12	109173776	109173798	109173776	+	RAMPAGE_only	8	8	14	1.152768	3.026987	chr12	109173584	109173796	DNA|hAT-Charlie|MER58A	+	chr12	109139396	109260147	ACACB|ENST00000377854.9	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260147	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr7	6054548	6054563	6054548	-	RAMPAGE_only	3	3	10	0.823405	2.947703	chr7	6054207	6054503	SINE|Alu|AluSx1	-	chr7	6046722	6059056	EIF2AK1|ENST00000463213.5	-	6046722,6048806,6049911,6054545,6058965	6047091,6048844,6050045,6054704,6059056	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr10	103181328	103181329	103181328	-	High_confidence	17	17	20	1.646811	3.921928	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103169283	103181320	NT5C2|ENST00000467380.1	-	103169283,103174857,103181184	103169449,103174982,103181320	0.550000
subcutaneous_adipose_tissue_female_adult_51_years	chr2	85376881	85376882	85376881	+	RAMPAGE_only	61	64	74	6.093200	5.509799	chr2	85376136	85377036	LINE|L1|L1MDa	-	chr2	85357190	85391094	ELMOD3|ENST00000444108.7	+	85357190,85362185,85363096,85368685,85369738,85371085,85371439,85377343,85387097,85389750,85390137,85390759	85357252,85362260,85363166,85368754,85369830,85371209,85371562,85377474,85387225,85389827,85390265,85391094	0.540541
subcutaneous_adipose_tissue_female_adult_51_years	chr17	31993993	31993994	31993993	+	High_confidence	4	4	6	0.494043	2.584963	chr17	31994036	31994094	LINE|L1|L1MA2	+	chr17	31994352	31999376	SUZ12|ENST00000578106.1	+	31994352,31995563,31996797,31998657	31994721,31995762,31996877,31999376	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	94679724	94679731	94679730	-	RAMPAGE_only	4	8	12	0.988086	3.459432	chr1	94679690	94679798	SINE|MIR|MIR3	+	chr1	94679280	94742398	STRG.4301.2	-	94679280,94732257,94742268	94679607,94732437,94742398	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr22	18149848	18149869	18149868	+	High_confidence	77	78	216	17.785557	5.616592	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.986111
subcutaneous_adipose_tissue_female_adult_51_years	chr5	151005779	151005780	151005779	+	RAMPAGE_only	6	6	7	0.576384	2.584963	chr5	151005650	151005821	SINE|MIR|MIRb	-	chr5	151020437	151028993	GPX3|NM_002084.3	+	151020437,151025339,151026899,151027431,151027908	151020741,151025493,151027017,151027531,151028993	0.857143
subcutaneous_adipose_tissue_female_adult_51_years	chr16	75248150	75248151	75248150	-	High_confidence	10	10	10	0.823405	3.121928	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.800000
subcutaneous_adipose_tissue_female_adult_51_years	chr22	49657343	49657356	49657355	-	High_confidence	5	6	10	0.823405	2.947703	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.700000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	227142956	227143010	227142956	-	RAMPAGE_only	8	8	19	1.564470	3.681881	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.578947
subcutaneous_adipose_tissue_female_adult_51_years	chr1	155679929	155679930	155679929	-	High_confidence	8	9	9	0.741065	2.750000	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	0.888889
subcutaneous_adipose_tissue_female_adult_51_years	chr8	38825317	38825361	38825360	+	RAMPAGE_only	40	47	194	15.974065	5.839318	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.943299
subcutaneous_adipose_tissue_female_adult_51_years	chr1	182390033	182390057	182390056	-	High_confidence	6	6	37	3.046600	4.682162	chr1	182389985	182390241	SINE|Alu|AluSx	+	chr1	182382893	182390304	GLUL|ENST00000491322.1	-	182382893,182388571	182387292,182390304	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	196741536	196741537	196741536	+	RAMPAGE_only	4	4	7	0.576384	2.584963	chr1	196741215	196741581	LTR|ERVL-MaLR|THE1D	-	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.857143
subcutaneous_adipose_tissue_female_adult_51_years	chr2	63827822	63827824	63827822	-	High_confidence	10	13	16	1.317449	3.589898	chr2	63827753	63828092	LTR|ERVL?|LTR55	-	chr2	63484603	63827843	WDPCP|ENST00000490935.5	-	63484603,63484916,63487446,63492855,63650658,63711496,63813621,63827621	63484663,63484987,63487494,63492940,63650838,63711591,63813707,63827843	0.562500
subcutaneous_adipose_tissue_female_adult_51_years	chr10	79435730	79435766	79435765	-	RAMPAGE_only	3	3	10	0.823405	3.169925	chr10	79435626	79435755	SINE|MIR|MIR3	-	chr10	79386036	79444219	ZCCHC24|ENST00000372333.3	-	79386036,79394275,79432557,79444101	79386458,79394440,79432758,79444219	0.800000
subcutaneous_adipose_tissue_female_adult_51_years	chr8	27977120	27977126	27977125	-	High_confidence	22	25	33	2.717238	4.437500	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977231	STRG.57689.3	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977231	0.818182
subcutaneous_adipose_tissue_female_adult_51_years	chr22	39021125	39021136	39021125	+	High_confidence	2	2	7	0.576384	2.521641	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr22	32857836	32857837	32857836	+	RAMPAGE_only	8	8	8	0.658724	3.000000	chr22	32857740	32857927	SINE|MIR|MIRb	+	chr22	32801700	32863043	TIMP3|ENST00000266085.6	+	32801700,32849451,32857248,32858016,32859179	32802122,32849534,32857360,32858138,32863043	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	8681595	8681603	8681599	+	High_confidence	18	21	41	3.375962	4.753226	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.634146
subcutaneous_adipose_tissue_female_adult_51_years	chr6	52579438	52579439	52579438	+	RAMPAGE_only	9	9	10	0.823405	2.725481	chr6	52579191	52579722	LTR|ERVL-MaLR|MLT1F1	+	chr6	52578365	52583559	TRAM2-AS1|ENST00000605910.1	+	52578365,52578501,52579374,52582862	52578393,52578594,52579609,52583559	0.700000
subcutaneous_adipose_tissue_female_adult_51_years	chr6	39819945	39819961	39819960	+	RAMPAGE_only	5	5	12	0.988086	2.845351	chr6	39819646	39819981	LTR|ERVL-MaLR|MLT1A0	-	chr6	39818750	39869045	STRG.43038.5	+	39818750,39856246,39860927,39864432,39864979,39867509,39868822	39821473,39856470,39861017,39864507,39865074,39867843,39869045	0.833333
subcutaneous_adipose_tissue_female_adult_51_years	chr12	88419255	88419279	88419278	-	High_confidence	2	3	8	0.658724	2.807355	chr12	88418975	88419670	LINE|L2|L2a	+	chr12	88382182	88419072	STRG.81496.1	-	88382182,88419049	88382574,88419072	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr19	11223351	11223352	11223351	-	RAMPAGE_only	26	26	28	2.305535	4.209867	chr19	11223304	11223458	LTR|ERVL-MaLR|MLT1J2	+	chr19	11199496	11236497	DOCK6|ENST00000587656.5	-	11199496,11200307,11200715,11200908,11201888,11202393,11202583,11204080,11204199,11208685,11208910,11211775,11211992,11213175,11214274,11214552,11215386,11215800,11216913,11217230,11221850,11222108,11222734,11222992,11227336,11228939,11232184,11233202,11235597,11236345	11199539,11200469,11200822,11201052,11202125,11202483,11202709,11204095,11204331,11208829,11209103,11211876,11212151,11213328,11214409,11214649,11215471,11215927,11217096,11217391,11222020,11222248,11222905,11223106,11227477,11229035,11232289,11233366,11235759,11236497	0.892857
subcutaneous_adipose_tissue_female_adult_51_years	chr10	45000453	45000515	45000453	+	High_confidence	110	111	650	53.521351	6.659937	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.929231
subcutaneous_adipose_tissue_female_adult_51_years	chr7	6044570	6044644	6044570	-	RAMPAGE_only	3	4	18	1.482130	2.855954	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6041152	6046437	EIF2AK1|ENST00000470168.1	-	6041152,6042932,6044561,6046070	6041219,6042993,6044661,6046437	0.888889
subcutaneous_adipose_tissue_female_adult_51_years	chr11	107441577	107441612	107441577	-	RAMPAGE_only	2	2	9	0.741065	3.169925	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr16	3263799	3263829	3263822	+	High_confidence	8	10	61	5.022773	4.496404	chr16	3263871	3263932	SINE|MIR|MIRc	+	chr16	3263821	3265780	STRG.94208.1	+	3263821	3265780	0.950820
subcutaneous_adipose_tissue_female_adult_51_years	chr18	39800293	39800314	39800313	-	High_confidence	4	4	12	0.988086	3.277613	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.583333
subcutaneous_adipose_tissue_female_adult_51_years	chr12	9065163	9065174	9065173	+	High_confidence	4	4	10	0.823405	2.947703	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.600000
subcutaneous_adipose_tissue_female_adult_51_years	chr5	96797192	96797232	96797192	-	RAMPAGE_only	2	2	10	0.823405	2.947703	chr5	96797097	96797154	DNA|hAT-Blackjack|MER81	-	chr5	96790584	96793671	ERAP1|ENST00000503311.1	-	96790584,96792060,96793399	96790643,96792192,96793671	0.600000
subcutaneous_adipose_tissue_female_adult_51_years	chr3	14047155	14047156	14047155	-	High_confidence	27	27	33	2.717238	4.718488	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14041207	14047187	STRG.20272.1	-	14041207,14046812	14041628,14047187	0.696970
subcutaneous_adipose_tissue_female_adult_51_years	chr14	50342487	50342518	50342517	-	High_confidence	3	3	7	0.576384	2.521641	chr14	50342457	50342639	DNA|hAT|MER53	+	chr14	50338945	50342490	CDKL1|ENST00000542671.5	-	50338945,50341031,50342131,50342379	50339029,50341232,50342222,50342490	0.857143
subcutaneous_adipose_tissue_female_adult_51_years	chr3	188225425	188225446	188225425	+	High_confidence	2	2	7	0.576384	2.521641	chr3	188225342	188225427	SINE|MIR|MIR3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.714286
subcutaneous_adipose_tissue_female_adult_51_years	chr19	53865343	53865346	53865343	+	High_confidence	7	7	12	0.988086	2.855389	chr19	53865313	53865624	SINE|Alu|AluSx	-	chr19	53865583	53876435	MYADM|NM_001290193.1	+	53865583,53869753,53873527	53865728,53869838,53876435	0.916667
subcutaneous_adipose_tissue_female_adult_51_years	chr9	129488843	129488931	129488856	+	High_confidence	16	16	70	5.763838	4.780621	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.957143
subcutaneous_adipose_tissue_female_adult_51_years	chr6	43013319	43013393	43013392	-	High_confidence	10	10	31	2.552557	4.438067	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr4	87524545	87524585	87524562	-	RAMPAGE_only	3	3	9	0.741065	2.725481	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87473417	87529092	SPARCL1|ENST00000503414.5	-	87473417,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87497130,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87497239,87499585,87529092	0.777778
subcutaneous_adipose_tissue_female_adult_51_years	chr6	79631294	79631329	79631328	+	High_confidence	104	118	313	25.772589	6.446006	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.948882
subcutaneous_adipose_tissue_female_adult_51_years	chr3	151531369	151531372	151531371	-	RAMPAGE_only	7	10	12	0.988086	3.095795	chr3	151528406	151534796	LINE|L1|L1PA7	+	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr3	157487448	157487449	157487448	-	High_confidence	11	12	13	1.070427	3.334679	chr3	157486755	157488128	LINE|L1|L1ME3C	+	chr3	157459681	157487427	STRG.26500.2	-	157459681,157460180,157470313,157487374	157459926,157460355,157470529,157487427	0.846154
subcutaneous_adipose_tissue_female_adult_51_years	chr3	8514942	8514956	8514955	+	RAMPAGE_only	4	4	9	0.741065	3.169925	chr3	8514139	8515002	LINE|L1|L1ME3	+	chr3	8501887	8574667	STRG.19886.1	+	8501887,8514924,8532736,8537184,8548567,8565431,8567439	8501980,8514995,8532825,8537440,8548903,8565647,8574667	0.777778
subcutaneous_adipose_tissue_female_adult_51_years	chr19	7642301	7642316	7642301	+	High_confidence	2	2	11	0.905746	2.921928	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7647414	STRG.103465.2	+	7642245,7642428,7642765,7642982,7643164,7644613,7645196,7646248,7647161,7647353	7642333,7642536,7642823,7643048,7643245,7644752,7645306,7646344,7647247,7647414	0.909091
subcutaneous_adipose_tissue_female_adult_51_years	chr5	115956823	115956848	115956828	+	High_confidence	2	2	10	0.823405	3.121928	chr5	115956262	115957250	LINE|L2|L2b	-	chr5	115956553	115958528	STRG.38521.5	+	115956553,115958428	115956920,115958528	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	166850211	166850241	166850216	+	RAMPAGE_only	2	2	10	0.823405	3.321928	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr5	115956570	115956676	115956675	+	High_confidence	123	130	1262	103.913761	7.319370	chr5	115956262	115957250	LINE|L2|L2b	-	chr5	115956553	115958528	STRG.38521.5	+	115956553,115958428	115956920,115958528	0.588748
subcutaneous_adipose_tissue_female_adult_51_years	chr2	208336896	208336914	208336896	+	RAMPAGE_only	2	2	7	0.576384	2.521641	chr2	208336812	208336898	LINE|CR1|L3	-	chr2	208266362	208358751	STRG.18064.2	+	208266362,208271510,208273583,208276711,208277536,208285725,208288728,208298640,208300936,208302241,208304170,208312235,208314293,208315192,208317866,208320251,208324141,208324910,208325269,208328179,208329841,208330522,208333314,208335305,208335792,208336045,208336837,208338507,208339417,208340010,208342553,208345110,208346049,208347858,208350023,208350770,208351351,208352653,208353897,208354570,208355189	208266415,208271691,208273733,208276830,208277708,208285933,208288818,208298779,208301094,208302353,208304318,208312295,208314423,208315373,208317941,208320359,208324282,208325037,208326429,208328280,208329913,208330694,208333493,208335419,208335901,208336200,208336928,208338568,208339555,208340131,208342649,208345194,208346147,208348023,208350083,208350947,208351455,208352782,208354159,208354645,208358751	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr4	79493255	79493284	79493282	+	High_confidence	5	7	20	1.646811	3.784184	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492595	79514489	STRG.30326.2	+	79492595,79493151,79513784	79492623,79493585,79514489	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr2	55228158	55228159	55228158	-	RAMPAGE_only	6	7	8	0.658724	2.500000	chr2	55228053	55228212	LINE|L2|L2c	+	chr2	55222271	55224398	CLHC1|ENST00000403506.1	-	55222271,55224190	55222493,55224398	0.625000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	91179462	91179526	91179462	-	High_confidence	1157	1206	5001	411.785039	7.596654	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.524895
subcutaneous_adipose_tissue_female_adult_51_years	chr1	156252930	156252931	156252930	-	High_confidence	4	4	6	0.494043	2.584963	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.666667
subcutaneous_adipose_tissue_female_adult_51_years	chr15	78306553	78306576	78306575	-	RAMPAGE_only	3	3	7	0.576384	2.807355	chr15	78306427	78306552	LINE|CR1|L3	-	chr15	78283234	78299794	WDR61|ENST00000267973.6	-	78283234,78285260,78286040,78288288,78289618,78289950,78292615,78293166,78294945,78295674,78299561	78283521,78285339,78286133,78288382,78289712,78290099,78292788,78293272,78294973,78295725,78299794	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr5	181047463	181047464	181047463	+	RAMPAGE_only	7	8	10	0.823405	2.846439	chr5	181047423	181047600	LINE|L1|L1ME4a	-	chr5	181040271	181054001	STRG.41046.3	+	181040271,181045466,181047398,181050087,181053199,181053468	181040432,181045598,181048271,181050369,181053316,181054001	0.900000
subcutaneous_adipose_tissue_female_adult_51_years	chr2	201115902	201115967	201115940	+	High_confidence	4	4	17	1.399789	3.250000	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.823529
subcutaneous_adipose_tissue_female_adult_51_years	chr14	81192669	81192719	81192669	-	RAMPAGE_only	7	7	62	5.105113	4.990092	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr11	77175226	77175303	77175302	+	High_confidence	56	57	155	12.762784	6.071687	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175274	77191187	STRG.75138.1	+	77175274,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77191187	0.987097
subcutaneous_adipose_tissue_female_adult_51_years	chr11	64226142	64226180	64226158	-	High_confidence	39	40	204	16.797470	6.799733	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.985294
subcutaneous_adipose_tissue_female_adult_51_years	chr11	36297562	36297563	36297562	+	RAMPAGE_only	7	7	7	0.576384	2.521641	chr11	36297506	36298145	LTR|ERV1|LTR78	-	chr11	36300960	36401264	PRR5L|ENST00000527172.5	+	36300960,36393845,36400996	36301070,36394011,36401264	0.714286
subcutaneous_adipose_tissue_female_adult_51_years	chr16	68267936	68267937	68267936	+	RAMPAGE_only	20	20	21	1.729151	3.721928	chr16	68267617	68268452	LTR|ERVL|MER21B	+	chr16	68266601	68275001	SLC7A6|ENST00000563146.1	+	68266601,68273821,68274690	68266721,68273904,68275001	0.714286
subcutaneous_adipose_tissue_female_adult_51_years	chr1	153686714	153686728	153686727	+	RAMPAGE_only	4	4	8	0.658724	2.807355	chr1	153686764	153686881	SINE|MIR|MIR3	+	chr1	153678700	153693968	STRG.6131.1	+	153678700,153679205,153680500,153681179,153681703,153682497,153683375,153683739,153684963,153685805,153686122,153686645,153687015,153687199,153687633,153688052,153688952,153689187,153689452,153689805,153690283,153693105,153693351	153679090,153679829,153680700,153681293,153681839,153682589,153683511,153683824,153685084,153685880,153686200,153686750,153687087,153687356,153687789,153688221,153689099,153689311,153689521,153689980,153690382,153693197,153693968	0.875000
subcutaneous_adipose_tissue_female_adult_51_years	chr14	91462223	91462243	91462235	-	RAMPAGE_only	3	3	9	0.741065	2.725481	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458858	91466355	PPP4R3A|ENST00000555718.5	-	91458858,91461380,91462048,91462734,91465249,91466260	91458869,91461607,91462221,91462877,91465419,91466355	0.555556
subcutaneous_adipose_tissue_female_adult_51_years	chr9	104906000	104906006	104906000	-	RAMPAGE_only	16	16	37	3.046600	4.551462	chr9	104905864	104906087	SINE|MIR|MIRb	+	chr9	104855565	104928139	ABCA1|ENST00000423487.6	-	104855565,104858521,104861678,104883038,104884426,104889101,104903613,104927934	104856088,104858698,104861800,104883157,104884568,104889195,104903771,104928139	0.945946
subcutaneous_adipose_tissue_female_adult_51_years	chr2	9422677	9422897	9422817	-	High_confidence	17	17	86	7.081286	5.925633	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NM_001319068.1	-	9405680,9407448,9408112,9412268,9414177,9418625,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9422660	0.697674
subcutaneous_adipose_tissue_female_adult_51_years	chr3	151531411	151531434	151531411	-	RAMPAGE_only	8	8	13	1.070427	3.546594	chr3	151528406	151534796	LINE|L1|L1PA7	+	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.846154
subcutaneous_adipose_tissue_female_adult_51_years	chr6	106541113	106541146	106541113	+	High_confidence	7	8	32	2.634897	4.250000	chr6	106541083	106541354	DNA|hAT-Charlie|MER102c	-	chr6	106541133	106555897	CRYBG1|ENST00000457437.1	+	106541133,106541585,106543439,106544570,106544787,106551851,106552183,106553454,106555767	106541295,106541621,106543597,106544697,106544933,106551978,106552216,106553567,106555897	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	212792444	212792473	212792472	-	High_confidence	4	4	11	0.905746	3.277613	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.818182
subcutaneous_adipose_tissue_female_adult_51_years	chr11	47420632	47420633	47420632	-	RAMPAGE_only	7	7	10	0.823405	2.641604	chr11	47420478	47420646	SINE|MIR|MIRb	+	chr11	47418768	47426266	PSMC3|ENST00000602866.5	-	47418768,47419115,47420263,47420630,47422573,47422829,47424045,47424428,47424606,47425120,47425866,47426204	47418945,47419197,47420409,47420727,47422722,47422973,47424183,47424491,47424711,47425246,47425950,47426266	0.700000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	109248481	109249026	109248481	+	High_confidence	17	17	222	18.279600	6.517518	chr12	109248273	109248822	LTR|ERVL|MLT2B3	-	chr12	109248957	109253061	ACACB|ENST00000396233.4	+	109248957,109252045,109253014	109250104,109252156,109253061	0.594595
subcutaneous_adipose_tissue_female_adult_51_years	chr12	56157286	56157349	56157286	+	High_confidence	14	14	71	5.846178	4.775327	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.830986
subcutaneous_adipose_tissue_female_adult_51_years	chr9	19126400	19126437	19126436	-	RAMPAGE_only	32	40	97	7.987032	5.994192	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19125505	19127475	PLIN2|ENST00000475923.1	-	19125505,19127418	19126448,19127475	0.587629
subcutaneous_adipose_tissue_female_adult_51_years	chr19	36850349	36850377	36850376	+	High_confidence	3	3	8	0.658724	2.500000	chr19	36850362	36850429	LTR|ERV1|MER67D	-	chr19	36850360	36879572	ZNF345|ENST00000589046.1	+	36850360,36851727,36876784	36850515,36851904,36879572	0.625000
subcutaneous_adipose_tissue_female_adult_51_years	chr6	132687374	132687375	132687374	-	High_confidence	11	11	13	1.070427	3.022055	chr6	132687157	132687546	LINE|L1|HAL1	+	chr6	132681589	132687385	STRG.46677.2	-	132681589,132684334,132685254,132686598	132683322,132684505,132685403,132687385	0.923077
subcutaneous_adipose_tissue_female_adult_51_years	chr3	114624940	114625007	114624984	-	High_confidence	18	19	157	12.927465	5.880220	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.764331
subcutaneous_adipose_tissue_female_adult_51_years	chr22	38192077	38192103	38192085	-	High_confidence	4	4	15	1.235108	3.521641	chr22	38191851	38192921	LINE|L2|L2c	-	chr22	38113537	38192124	STRG.111483.2	-	38113537,38115526,38116074,38120758,38123094,38126370,38126761,38128268,38129453,38132830,38134987,38139981,38143104,38144895,38145437,38169217,38192032	38113654,38115681,38116211,38120909,38123258,38126449,38127458,38128430,38129562,38133013,38135084,38140169,38143288,38144978,38145653,38169471,38192124	0.800000
subcutaneous_adipose_tissue_female_adult_51_years	chr6	158631135	158631166	158631165	+	RAMPAGE_only	5	6	14	1.152768	3.235926	chr6	158631108	158631267	SINE|MIR|MIRc	-	chr6	158560089	158635435	STRG.47894.1	+	158560089,158573419,158580939,158583953,158585303,158589671,158605266,158607243,158608332,158608658,158623549,158625103,158625702,158628407,158629729,158631322,158631809	158560232,158573523,158580995,158584044,158585425,158589782,158605347,158607343,158608463,158608750,158623607,158625206,158625754,158628490,158629819,158631389,158635435	0.857143
subcutaneous_adipose_tissue_female_adult_51_years	chr16	2759938	2760066	2760017	+	High_confidence	7	10	37	3.046600	3.582112	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	0.972973
subcutaneous_adipose_tissue_female_adult_51_years	chr19	44914321	44914322	44914321	+	High_confidence	97	102	108	8.892778	5.327489	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.907407
subcutaneous_adipose_tissue_female_adult_51_years	chr17	47067498	47067534	47067498	-	High_confidence	95	104	388	31.948129	5.740861	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.930412
subcutaneous_adipose_tissue_female_adult_51_years	chr21	14882004	14882005	14882004	-	High_confidence	27	27	27	2.223195	4.606739	chr21	14881808	14882178	LTR|ERVL-MaLR|MLT1A0	-	chr21	14852970	14881975	LINC02246|ENST00000418954.2	-	14852970,14857541,14881886	14853431,14857708,14881975	0.777778
subcutaneous_adipose_tissue_female_adult_51_years	chr3	16228492	16228642	16228594	+	RAMPAGE_only	27	28	132	10.868951	5.002496	chr3	16228359	16228663	SINE|Alu|AluSx	+	chr3	16219399	16229745	GALNT15|ENST00000617544.3	+	16219399,16219909,16222614,16227353,16227444	16219534,16220014,16222758,16227443,16229745	0.984848
subcutaneous_adipose_tissue_female_adult_51_years	chr9	110489658	110489677	110489658	-	RAMPAGE_only	6	8	11	0.905746	2.913977	chr9	110489280	110489644	LTR|ERVL-MaLR|THE1B	-	chr9	110442478	110550054	SVEP1|ENST00000467821.1	-	110442478,110445836,110446899,110450058,110451288,110455589,110457255,110458470,110458951,110465864,110468939,110471363,110472158,110476203,110479634,110481241,110482360,110483585,110489649,110496814,110499040,110503037,110512925,110513947,110546114,110549848	110443720,110446038,110447057,110450260,110451402,110455703,110457352,110458562,110459113,110466026,110469101,110471597,110472323,110476315,110479756,110481436,110482492,110483693,110489779,110496933,110499238,110503217,110513105,110514106,110546291,110550054	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr3	9973632	9973639	9973632	-	RAMPAGE_only	5	5	15	1.235108	3.324863	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.933333
subcutaneous_adipose_tissue_female_adult_51_years	chr11	46338777	46338798	46338792	+	RAMPAGE_only	4	4	14	1.152768	3.521641	chr11	46338709	46338886	SINE|MIR|MIRb	+	chr11	46332904	46380554	DGKZ|NM_201532.2	+	46332904,46367290,46367651,46368004,46369493,46369940,46371312,46371486,46371703,46372074,46372427,46372616,46372770,46372960,46374156,46374398,46374603,46374765,46374933,46375431,46375850,46376065,46376327,46376523,46377072,46378197,46378456,46378990,46379202,46379468,46379830	46333487,46367399,46367747,46368079,46369550,46370009,46371384,46371603,46371775,46372170,46372510,46372677,46372884,46373101,46374235,46374454,46374666,46374839,46375045,46375631,46375951,46376145,46376397,46376564,46377212,46378229,46378500,46379111,46379236,46379568,46380554	0.571429
subcutaneous_adipose_tissue_female_adult_51_years	chr19	58312183	58312184	58312183	+	RAMPAGE_only	5	5	7	0.576384	2.807355	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr14	34536102	34536110	34536102	-	High_confidence	4	5	11	0.905746	3.121928	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.636364
subcutaneous_adipose_tissue_female_adult_51_years	chr19	38376013	38376033	38376013	+	RAMPAGE_only	12	12	41	3.375962	4.653056	chr19	38375972	38376110	SINE|MIR|MIR	-	chr19	38375008	38382753	PSMD8|ENST00000592035.5	+	38375008,38376159,38376351,38379239,38380898,38382116	38375509,38376232,38376454,38379405,38380999,38382753	0.536585
subcutaneous_adipose_tissue_female_adult_51_years	chr11	117836274	117836324	117836274	+	High_confidence	12	12	39	3.211281	4.875146	chr11	117836254	117836523	SINE|Alu|AluJb	-	chr11	117836319	117838379	STRG.76878.1	+	117836319,117837167	117836502,117838379	0.897436
subcutaneous_adipose_tissue_female_adult_51_years	chr14	73463624	73463625	73463624	-	High_confidence	7	7	9	0.741065	2.500000	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73366896	73463625	AC005280.3|ENST00000556700.5	-	73366896,73409936,73462528,73463474	73366981,73410068,73462689,73463625	0.555556
subcutaneous_adipose_tissue_female_adult_51_years	chr5	150125450	150125538	150125450	-	RAMPAGE_only	7	7	32	2.634897	4.481728	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr7	82214035	82214042	82214041	-	RAMPAGE_only	168	246	341	28.078124	6.479541	chr7	82213847	82214213	LTR|ERVL-MaLR|MLT1A0	-	chr7	82004513	82215335	STRG.53335.3	-	82004513,82005764,82007678,82012153,82013460,82014400,82032796,82038076,82060427,82064303,82066454,82084768,82117043,82136634,82170549,82215157	82005497,82005839,82007756,82012243,82013510,82014479,82032901,82038235,82060527,82064354,82066524,82084900,82117173,82136676,82170609,82215335	0.914956
subcutaneous_adipose_tissue_female_adult_51_years	chr8	116648828	116648865	116648828	-	RAMPAGE_only	7	7	25	2.058513	4.055958	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.920000
subcutaneous_adipose_tissue_female_adult_51_years	chr7	64999443	64999444	64999443	-	RAMPAGE_only	7	8	9	0.741065	2.947703	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64990808	65006653	ERV3-1|ENST00000394323.2	-	64990808,65006540	64993414,65006653	0.555556
subcutaneous_adipose_tissue_female_adult_51_years	chr3	155085060	155085078	155085060	+	High_confidence	5	5	11	0.905746	2.845351	chr3	155085055	155085093	LINE|L2|L2	-	chr3	155084167	155183729	MME|ENST00000615825.1	+	155084167,155085058,155114993,155116478,155116663,155116867,155118745,155138101,155140190,155141990,155142236,155143442,155144358,155147143,155148549,155160389,155166901,155168491,155168731,155172116,155172535,155180359	155084327,155085094,155115155,155116559,155116759,155116986,155118811,155138236,155140292,155142127,155142330,155143571,155144457,155147224,155148653,155160448,155167021,155168625,155168797,155172212,155172612,155183729	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr13	40377923	40377933	40377923	-	High_confidence	4	4	9	0.741065	2.947703	chr13	40377863	40377935	SINE|MIR|MIRc	+	chr13	40216483	40377697	STRG.83916.8	-	40216483,40337247,40350108,40377050	40217750,40344205,40350302,40377697	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr17	15475732	15475733	15475732	-	High_confidence	12	12	15	1.235108	3.640224	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15437858	15475728	CDRT4|ENST00000520956.2	-	15437858,15475600	15438200,15475728	0.666667
subcutaneous_adipose_tissue_female_adult_51_years	chr12	1059448	1059476	1059448	+	RAMPAGE_only	22	22	67	5.516816	5.238205	chr12	1058934	1060038	LINE|L1|L1P4	-	chr12	1083140	1444589	ERC1|ENST00000538971.6	+	1083140,1104749,1110191,1115865,1141619,1180539,1181924,1183280,1189858,1204500,1236768,1289851,1371832,1408148,1410388,1444561	1083580,1104824,1110347,1116033,1141787,1180677,1182065,1183421,1190052,1204512,1236904,1290012,1371977,1408247,1410453,1444589	0.850746
subcutaneous_adipose_tissue_female_adult_51_years	chr7	128256423	128257385	128256775	+	RAMPAGE_only	940	971	4004	329.691521	7.413010	chr7	128256660	128256798	SINE|MIR|MIR3	-	chr7	128241283	128257628	LEP|ENST00000308868.4	+	128241283,128251990,128254403	128241306,128252162,128257628	0.999251
subcutaneous_adipose_tissue_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	160	160	160	13.174486	4.522545	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.981250
subcutaneous_adipose_tissue_female_adult_51_years	chr16	29963560	29963561	29963560	+	High_confidence	4	7	7	0.576384	2.807355	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.857143
subcutaneous_adipose_tissue_female_adult_51_years	chr16	68265982	68265989	68265988	+	High_confidence	3	3	7	0.576384	2.584963	chr16	68265978	68266277	SINE|Alu|AluYm1	+	chr16	68265515	68274798	SLC7A6|ENST00000562727.1	+	68265515,68266594,68274690	68265773,68266721,68274798	0.714286
subcutaneous_adipose_tissue_female_adult_51_years	chr20	35732433	35732456	35732433	-	High_confidence	5	5	15	1.235108	3.189898	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	29	29	40	3.293622	4.712019	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.700000
subcutaneous_adipose_tissue_female_adult_51_years	chr4	141332616	141332617	141332616	-	High_confidence	71	71	75	6.175540	4.426402	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.853333
subcutaneous_adipose_tissue_female_adult_51_years	chr22	17726688	17726841	17726688	+	RAMPAGE_only	12	12	95	7.822351	5.615864	chr22	17726672	17726726	SINE|5S-Deu-L2|AmnSINE1	-	chr22	17706709	17727670	BCL2L13|ENST00000485631.1	+	17706709,17726676	17706825,17727670	0.989474
subcutaneous_adipose_tissue_female_adult_51_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	23	23	27	2.223195	4.209867	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.629630
subcutaneous_adipose_tissue_female_adult_51_years	chr12	50924078	50924079	50924078	+	High_confidence	6	7	7	0.576384	2.521641	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50924004	50929955	METTL7A|ENST00000550502.1	+	50924004,50925036,50929913	50924080,50925536,50929955	0.571429
subcutaneous_adipose_tissue_female_adult_51_years	chrX	120143500	120143501	120143500	+	High_confidence	84	84	84	6.916605	5.291085	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120143694	120146624	STRG.115801.1	+	120143694,120145637	120143900,120146624	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr19	46350849	46350851	46350849	+	RAMPAGE_only	6	10	15	1.235108	3.235926	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.933333
subcutaneous_adipose_tissue_female_adult_51_years	chr10	44971669	44971687	44971686	+	High_confidence	4	4	8	0.658724	2.807355	chr10	44971649	44971712	SINE|MIR|MIRb	-	chr10	44971793	44993430	RASSF4|ENST00000472561.5	+	44971793,44982520,44984812,44989273,44989669,44990947,44991904,44993268	44971848,44982663,44984970,44989375,44989721,44991069,44992002,44993430	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr10	62056930	62056947	62056930	+	RAMPAGE_only	4	4	10	0.823405	2.947703	chr10	62056749	62056941	DNA|hAT-Charlie|MER58A	+	chr10	62049210	62096948	ARID5B|NM_001244638.1	+	62049210,62050887,62057116,62059242,62069699,62085701,62090861	62049483,62051000,62057318,62059295,62069797,62085900,62096948	0.800000
subcutaneous_adipose_tissue_female_adult_51_years	chr7	102822456	102822461	102822458	-	RAMPAGE_only	12	17	31	2.552557	4.418157	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.645161
subcutaneous_adipose_tissue_female_adult_51_years	chr13	47991641	47991698	47991649	-	RAMPAGE_only	32	42	96	7.904692	5.919598	chr13	47990978	47991673	LINE|L2|L2a	+	chr13	47942780	48001020	SUCLA2|ENST00000642944.1	-	47942780,47948939,47949482,47954139,47954395,47968594,47973263,47988540,47988881,47996842,48000906	47943445,47949028,47949603,47954282,47954557,47968733,47973392,47988703,47988981,47997023,48001020	0.906250
subcutaneous_adipose_tissue_female_adult_51_years	chr5	77088055	77088062	77088061	+	High_confidence	20	22	33	2.717238	4.390320	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088058	77148523	ZBED3-AS1|ENST00000513591.5	+	77088058,77098654,77100235,77118319,77147651	77088472,77098747,77100391,77118521,77148523	0.909091
subcutaneous_adipose_tissue_female_adult_51_years	chr7	88283855	88283857	88283855	-	RAMPAGE_only	8	10	15	1.235108	2.985228	chr7	88283844	88283877	LINE|RTE-BovB|MamRTE1	-	chr7	88270901	88306880	STRG.53546.1	-	88270901,88280914,88282640,88283813,88290915,88306791	88279628,88281079,88283168,88284271,88291014,88306880	0.933333
subcutaneous_adipose_tissue_female_adult_51_years	chr3	14047196	14047206	14047205	-	High_confidence	26	34	51	4.199368	4.726755	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14041207	14047187	STRG.20272.1	-	14041207,14046812	14041628,14047187	0.823529
subcutaneous_adipose_tissue_female_adult_51_years	chr5	54310435	54310458	54310457	-	High_confidence	7	8	16	1.317449	3.139572	chr5	54310446	54310538	DNA|TcMar-Tigger|Tigger15a	+	chr5	53886444	54310415	ARL15|ENST00000510591.6	-	53886444,54113201,54154579,54171783,54310294	53886713,54113410,54154639,54171928,54310415	0.812500
subcutaneous_adipose_tissue_female_adult_51_years	chr1	176162936	176162963	176162936	-	RAMPAGE_only	13	14	23	1.893832	4.229871	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.782609
subcutaneous_adipose_tissue_female_adult_51_years	chr19	52169761	52169762	52169761	-	High_confidence	6	6	7	0.576384	2.584963	chr19	52169654	52169811	SINE|Alu|AluJb	+	chr19	52157365	52170386	ZNF836|ENST00000596428.5	-	52157365,52160464,52168057,52169647,52170359	52157540,52160591,52168152,52169781,52170386	0.571429
subcutaneous_adipose_tissue_female_adult_51_years	chr17	35367029	35367030	35367029	-	High_confidence	5	5	8	0.658724	2.500000	chr17	35366789	35367087	SINE|Alu|AluJb	+	chr17	35363621	35367294	SLFN11|ENST00000589562.1	-	35363621,35366946	35363826,35367294	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	643625	643636	643625	-	High_confidence	84	87	317	26.101951	6.389965	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.599369
subcutaneous_adipose_tissue_female_adult_51_years	chr4	119217569	119217625	119217569	+	RAMPAGE_only	5	5	23	1.893832	3.970573	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212742	119294638	STRG.31989.2	+	119212742,119214069,119217549,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119212873,119214222,119217673,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119294638	0.739130
subcutaneous_adipose_tissue_female_adult_51_years	chr15	93863033	93863066	93863065	+	High_confidence	7	7	35	2.881919	4.741364	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.628571
subcutaneous_adipose_tissue_female_adult_51_years	chr16	8842153	8842215	8842153	+	High_confidence	12	13	34	2.799578	4.208807	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.882353
subcutaneous_adipose_tissue_female_adult_51_years	chr1	196404216	196404229	196404228	-	RAMPAGE_only	5	5	9	0.741065	2.500000	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225782	196465387	KCNT2|ENST00000498426.5	-	196225782,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196317173,196331155,196333846,196340340,196342078,196373139,196398562,196423049,196425851,196428104,196429576,196465292	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196317269,196331261,196334060,196340570,196342228,196373248,196398671,196423113,196425988,196428269,196429757,196465387	0.777778
subcutaneous_adipose_tissue_female_adult_51_years	chr5	151005667	151005698	151005697	+	RAMPAGE_only	3	3	8	0.658724	2.521641	chr5	151005650	151005821	SINE|MIR|MIRb	-	chr5	151020437	151028993	GPX3|NM_002084.3	+	151020437,151025339,151026899,151027431,151027908	151020741,151025493,151027017,151027531,151028993	0.875000
subcutaneous_adipose_tissue_female_adult_51_years	chr7	107580245	107580267	107580245	+	High_confidence	262	265	1410	116.100161	7.169792	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.938298
subcutaneous_adipose_tissue_female_adult_51_years	chr11	123060124	123060229	123060168	-	High_confidence	44	46	241	19.844070	5.463882	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.556017
subcutaneous_adipose_tissue_female_adult_51_years	chr21	28090339	28090410	28090339	+	High_confidence	150	170	547	45.040275	4.829710	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.987203
subcutaneous_adipose_tissue_female_adult_51_years	chr19	51350329	51350369	51350368	-	RAMPAGE_only	6	6	28	2.305535	4.008622	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr17	39927951	39927961	39927951	-	High_confidence	5	5	9	0.741065	3.000000	chr17	39927855	39928002	SINE|MIR|MIRc	-	chr17	39921040	39927804	ORMDL3|NM_139280.3	-	39921040,39923111,39924029,39927483	39922685,39923263,39924225,39927804	0.777778
subcutaneous_adipose_tissue_female_adult_51_years	chr12	9965312	9965321	9965320	+	RAMPAGE_only	42	44	67	5.516816	5.477125	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.597015
subcutaneous_adipose_tissue_female_adult_51_years	chr3	28347646	28347664	28347653	-	High_confidence	9	9	28	2.305535	4.209867	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.821429
subcutaneous_adipose_tissue_female_adult_51_years	chr13	52661481	52661526	52661481	+	RAMPAGE_only	2	2	9	0.741065	2.503258	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr20	35153271	35153324	35153271	+	High_confidence	2	3	14	1.152768	3.392747	chr20	35152901	35155074	Retroposon|SVA|SVA_F	+	chr20	35153138	35177362	STRG.107646.1	+	35153138,35170925,35172088,35174701,35176167,35176697	35153567,35171219,35172224,35174953,35176446,35177362	0.928571
subcutaneous_adipose_tissue_female_adult_51_years	chr19	48868595	48868631	48868613	-	High_confidence	67	72	289	23.796416	6.693734	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.989619
subcutaneous_adipose_tissue_female_adult_51_years	chr2	201116007	201116034	201116033	+	High_confidence	7	7	17	1.399789	3.030639	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.941176
subcutaneous_adipose_tissue_female_adult_51_years	chr12	16353884	16353940	16353884	+	High_confidence	202	204	298	24.537481	5.510756	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.661074
subcutaneous_adipose_tissue_female_adult_51_years	chr19	5680233	5680249	5680240	-	High_confidence	4	4	15	1.235108	3.506891	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	15764153	15764159	15764153	-	RAMPAGE_only	394	419	1144	94.197577	7.023715	chr12	15763995	15764357	LTR|ERVL-MaLR|THE1B	-	chr12	15647149	15766415	STRG.78675.6	-	15647149,15650822,15654144,15658078,15658496,15660613,15662025,15665755,15666439,15669386,15669663,15670855,15681225,15682892,15764073	15647260,15651006,15654293,15658153,15658585,15660740,15662099,15665892,15666522,15669536,15669825,15670923,15681302,15682972,15766415	0.942308
subcutaneous_adipose_tissue_female_adult_51_years	chr15	75626289	75626305	75626304	-	High_confidence	5	5	11	0.905746	2.845351	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr5	176411434	176411459	176411458	-	RAMPAGE_only	4	5	8	0.658724	2.750000	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	105233175	105233220	105233219	-	High_confidence	8	11	36	2.964259	5.058814	chr12	105233175	105233274	LINE|L2|L2c	+	chr12	105177109	105233154	APPL2|ENST00000547809.5	-	105177109,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105233090	105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105233154	0.861111
subcutaneous_adipose_tissue_female_adult_51_years	chr20	45833289	45833310	45833293	-	High_confidence	2	2	10	0.823405	2.947703	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.900000
subcutaneous_adipose_tissue_female_adult_51_years	chr6	138415237	138415299	138415237	+	RAMPAGE_only	8	8	34	2.799578	4.498940	chr6	138415062	138415240	LTR|ERVL|ERV3-16A3_LTR	+	chr6	138405970	138422197	STRG.46923.5	+	138405970,138412879,138415197	138406151,138413154,138422197	0.970588
subcutaneous_adipose_tissue_female_adult_51_years	chr12	8788252	8788253	8788252	+	High_confidence	13	13	14	1.152768	3.238901	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.785714
subcutaneous_adipose_tissue_female_adult_51_years	chr4	2867814	2867851	2867835	+	High_confidence	4	4	15	1.235108	3.378783	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.866667
subcutaneous_adipose_tissue_female_adult_51_years	chr1	21876230	21876277	21876230	-	RAMPAGE_only	3	3	19	1.564470	3.392147	chr1	21876092	21876241	LINE|L2|L2c	+	chr1	21822244	21896271	STRG.886.2	-	21822244,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884677,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896271	0.947368
subcutaneous_adipose_tissue_female_adult_51_years	chr2	177499695	177499714	177499695	+	RAMPAGE_only	5	5	14	1.152768	3.235926	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.857143
subcutaneous_adipose_tissue_female_adult_51_years	chr12	58781708	58781719	58781708	-	High_confidence	8	8	19	1.564470	3.826875	chr12	58781360	58781953	LTR|ERVL|MER70B	-	chr12	58781064	58781501	STRG.80366.1	-	58781064	58781501	0.631579
subcutaneous_adipose_tissue_female_adult_51_years	chrX	19349980	19350037	19349980	+	RAMPAGE_only	4	4	14	1.152768	2.931209	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19352828	19355445	PDHA1|ENST00000479146.1	+	19352828,19354490,19355348	19353173,19354583,19355445	0.571429
subcutaneous_adipose_tissue_female_adult_51_years	chr5	173790908	173790942	173790930	-	High_confidence	3	3	9	0.741065	3.000000	chr5	173790732	173790899	DNA|hAT-Tip100|MER115	-	chr5	173786927	173790925	LINC01485|ENST00000523617.5	-	173786927,173787688,173790635,173790808	173787247,173787745,173790727,173790925	0.555556
subcutaneous_adipose_tissue_female_adult_51_years	chr17	2667103	2667196	2667195	+	High_confidence	12	12	30	2.470216	4.706891	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.866667
subcutaneous_adipose_tissue_female_adult_51_years	chr1	166850112	166850125	166850124	+	RAMPAGE_only	13	13	22	1.811492	4.297079	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.954545
subcutaneous_adipose_tissue_female_adult_51_years	chr7	95589968	95589969	95589968	-	High_confidence	5	5	7	0.576384	2.521641	chr7	95589942	95590063	SINE|Alu|AluJr	-	chr7	95587483	95589717	PDK4|ENST00000498190.1	-	95587483,95589639	95587825,95589717	0.571429
subcutaneous_adipose_tissue_female_adult_51_years	chr5	149151893	149151894	149151893	+	RAMPAGE_only	9	9	11	0.905746	2.550341	chr5	149151849	149151960	LINE|L2|L2a	-	chr5	149149710	149157373	STRG.40109.11	+	149149710	149157373	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr3	42770599	42770600	42770599	+	High_confidence	9	9	9	0.741065	2.725481	chr3	42769529	42771022	LTR|ERV1|LTR12C	+	chr3	42770611	42773635	LOC729083|NR_122070.1	+	42770611,42773204	42771077,42773635	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr4	122917902	122917917	122917902	-	RAMPAGE_only	3	3	10	0.823405	2.646439	chr4	122917758	122918008	LINE|L2|L2b	+	chr4	122892649	122922442	NUDT6|ENST00000510735.1	-	122892649,122897623,122922334	122893225,122897678,122922442	0.800000
subcutaneous_adipose_tissue_female_adult_51_years	chr6	108960936	108960953	108960936	+	RAMPAGE_only	3	3	11	0.905746	3.277613	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108953032	108974621	STRG.45329.1	+	108953032,108961571,108962013,108964179,108964979,108973356	108953351,108961694,108962127,108964312,108965140,108974621	0.545455
subcutaneous_adipose_tissue_female_adult_51_years	chr6	125828167	125828228	125828183	+	RAMPAGE_only	9	9	36	2.964259	4.631293	chr6	125827884	125828197	LINE|L2|L2a	-	chr6	125815217	125874968	NCOA7|ENST00000419660.1	+	125815217,125855019,125874888	125815404,125855240,125874968	0.805556
subcutaneous_adipose_tissue_female_adult_51_years	chrX	53546444	53546454	53546444	-	RAMPAGE_only	7	7	15	1.235108	3.467720	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.733333
subcutaneous_adipose_tissue_female_adult_51_years	chr9	92536601	92536704	92536601	-	High_confidence	40	42	152	12.515762	5.930356	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.894737
subcutaneous_adipose_tissue_female_adult_51_years	chr13	101529703	101529716	101529703	+	RAMPAGE_only	2	2	10	0.823405	2.721928	chr13	101529576	101529918	LTR|ERVL-MaLR|THE1C	+	chr13	101489951	101716446	ITGBL1|NM_001271756.1	+	101489951,101567698,101575423,101579286,101583215,101598152,101692584,101706755,101714437,101715562	101490000,101567845,101575546,101579427,101583356,101598299,101692701,101706902,101714551,101716446	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr19	53874819	53874883	53874819	+	RAMPAGE_only	5	5	19	1.564470	3.176110	chr19	53874763	53874953	SINE|Alu|AluSx	-	chr19	53869405	53876435	MYADM|ENST00000391769.2	+	53869405,53869753,53873527	53869598,53869838,53876435	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr14	95516107	95516121	95516119	+	High_confidence	6	11	19	1.564470	3.725481	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.947368
subcutaneous_adipose_tissue_female_adult_51_years	chr14	50756681	50756716	50756715	-	RAMPAGE_only	6	7	10	0.823405	3.121928	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.900000
subcutaneous_adipose_tissue_female_adult_51_years	chrX	74000350	74000382	74000381	+	RAMPAGE_only	3	3	7	0.576384	2.521641	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	6016516	6016562	6016516	-	RAMPAGE_only	4	4	25	2.058513	4.334963	chr12	6016356	6016502	SINE|MIR|MIR3	-	chr12	5948873	6124665	STRG.77741.3	-	5948873,5949785,5951843,5952390,5953495,5967485,5968126,5969210,5971598,5976110,5981785,5983149,5985044,5985562,5991818,5993861,5994414,5996001,6011616,6012086,6013480,6016088,6016515,6016753,6018364,6021899,6022739,6023630,6025579,6025905,6029341,6031443,6034687,6036387,6044290,6046722,6052542,6056856,6057848,6062953,6064245,6065136,6071296,6072330,6073618,6075334,6095459,6110373,6110865,6121173,6122724,6124420	5949203,5949883,5951883,5952519,5953594,5967602,5968167,5969391,5971709,5976260,5981991,5983254,5985119,5985665,5992018,5994203,5994607,5996222,6011794,6012130,6013645,6016232,6016656,6016870,6019743,6022035,6022898,6023787,6025693,6026046,6029488,6031578,6034826,6036491,6044451,6046817,6052783,6057072,6058044,6063054,6064384,6065273,6071343,6072442,6073741,6075551,6095584,6110582,6110968,6121338,6123196,6124665	0.840000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	53175822	53175857	53175838	-	High_confidence	7	8	25	2.058513	4.003856	chr12	53175804	53176005	SINE|MIR|MIRc	-	chr12	53157662	53176710	STRG.80183.11	-	53157662,53174777	53158197,53176710	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr20	34369396	34369458	34369457	+	RAMPAGE_only	3	3	14	1.152768	3.392747	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.928571
subcutaneous_adipose_tissue_female_adult_51_years	chr13	110314084	110314146	110314140	-	High_confidence	12	18	95	7.822351	5.287911	chr13	110314011	110314270	LINE|L1|L1MD3	+	chr13	110312312	110314131	STRG.85864.1	-	110312312,110313872	110313393,110314131	0.968421
subcutaneous_adipose_tissue_female_adult_51_years	chr4	52159263	52159323	52159268	-	High_confidence	49	53	164	13.503849	3.718235	chr4	52159205	52159466	SINE|Alu|AluJb	-	chr4	52158125	52159254	STRG.29694.1	-	52158125	52159254	0.969512
subcutaneous_adipose_tissue_female_adult_51_years	chr17	59619894	59619929	59619894	+	High_confidence	156	177	522	42.981762	6.487086	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.896552
subcutaneous_adipose_tissue_female_adult_51_years	chr8	18063185	18063198	18063197	-	High_confidence	10	10	20	1.646811	3.826875	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.950000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	19980361	19980363	19980362	-	High_confidence	6	11	11	0.905746	3.277613	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	0.818182
subcutaneous_adipose_tissue_female_adult_51_years	chr12	107864789	107864816	107864796	-	High_confidence	9	11	22	1.811492	4.106603	chr12	107864193	107865394	LTR|ERV1|LTR12D	+	chr12	107864010	107864697	STRG.82393.1	-	107864010	107864697	0.636364
subcutaneous_adipose_tissue_female_adult_51_years	chr10	68749204	68749258	68749245	+	RAMPAGE_only	3	3	13	1.070427	3.180833	chr10	68749287	68749410	LINE|L1|L1MB3	+	chr10	68752783	68771301	STRG.69292.9	+	68752783,68754713,68755369,68757293,68761006,68765887,68771205	68754077,68754827,68756483,68757377,68761192,68766079,68771301	0.692308
subcutaneous_adipose_tissue_female_adult_51_years	chr20	18794077	18794086	18794085	+	High_confidence	9	9	21	1.729151	3.921928	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.952381
subcutaneous_adipose_tissue_female_adult_51_years	chr20	44532569	44532570	44532569	+	High_confidence	7	9	9	0.741065	3.169925	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.888889
subcutaneous_adipose_tissue_female_adult_51_years	chr2	11345340	11345442	11345436	-	High_confidence	98	115	373	30.713021	6.732624	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11215359	11345429	STRG.10311.4	-	11215359,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345429	0.890080
subcutaneous_adipose_tissue_female_adult_51_years	chr1	175177611	175177631	175177611	-	RAMPAGE_only	3	3	9	0.741065	2.725481	chr1	175177563	175177679	SINE|MIR|MIRc	+	chr1	175156986	175166741	KIAA0040|ENST00000619513.1	-	175156986,175166561	175161146,175166741	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	123390760	123390774	123390760	+	High_confidence	4	4	9	0.741065	2.947703	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123390474	123409350	STRG.82888.1	+	123390474,123395046,123396344,123403572,123404883,123407492	123390786,123395266,123396432,123403632,123405074,123409350	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr14	95481676	95481687	95481680	-	RAMPAGE_only	3	5	15	1.235108	3.139572	chr14	95481614	95481737	LTR|ERVL|LTR33A_	-	chr14	95443660	95475836	SYNE3|ENST00000553340.1	-	95443660,95445908,95449930,95452246,95455376,95457176,95465930,95467794,95475677	95444628,95446091,95450105,95452383,95455724,95457338,95466240,95467967,95475836	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	79873262	79873267	79873266	-	High_confidence	7	8	13	1.070427	3.085055	chr12	79873243	79873519	DNA|hAT-Charlie|Charlie1a	+	chr12	79828370	79872872	PPP1R12A|ENST00000548318.1	-	79828370,79832331,79845301,79848787,79872807	79828464,79832491,79845420,79848931,79872872	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr5	140633665	140633673	140633665	-	High_confidence	3	3	11	0.905746	3.121928	chr5	140633624	140633721	LINE|CR1|L3	+	chr5	140632343	140633651	CD14|ENST00000498971.6	-	140632343,140633068,140633530	140632980,140633192,140633651	0.636364
subcutaneous_adipose_tissue_female_adult_51_years	chr1	19344388	19344429	19344388	-	RAMPAGE_only	12	12	24	1.976173	4.001629	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr7	80524841	80524850	80524846	+	RAMPAGE_only	19	22	39	3.211281	4.787144	chr7	80524761	80524908	LTR|ERV1|LTR38B	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.641026
subcutaneous_adipose_tissue_female_adult_51_years	chr1	51297967	51297975	51297974	-	High_confidence	4	4	11	0.905746	3.121928	chr1	51297625	51298239	LINE|L2|L2a	+	chr1	51287257	51297961	TTC39A|NM_001297666.1	-	51287257,51288838,51290004,51290513,51294390,51296078,51297790	51288280,51288955,51290119,51290625,51294511,51296170,51297961	0.909091
subcutaneous_adipose_tissue_female_adult_51_years	chr15	78306517	78306525	78306517	-	RAMPAGE_only	9	9	17	1.399789	3.625000	chr15	78306427	78306552	LINE|CR1|L3	-	chr15	78283234	78299794	WDR61|ENST00000267973.6	-	78283234,78285260,78286040,78288288,78289618,78289950,78292615,78293166,78294945,78295674,78299561	78283521,78285339,78286133,78288382,78289712,78290099,78292788,78293272,78294973,78295725,78299794	0.705882
subcutaneous_adipose_tissue_female_adult_51_years	chr1	7913248	7913268	7913267	-	RAMPAGE_only	14	14	38	3.128941	3.832811	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.789474
subcutaneous_adipose_tissue_female_adult_51_years	chr8	124673341	124673384	124673346	-	High_confidence	23	26	63	5.187454	4.548370	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.841270
subcutaneous_adipose_tissue_female_adult_51_years	chr9	92559106	92559134	92559122	-	RAMPAGE_only	8	15	29	2.387876	3.794336	chr9	92557942	92559647	LINE|L1|L1PB1	-	chr9	92517687	92536688	STRG.64711.5	-	92517687,92522574,92536600	92517875,92522893,92536688	0.793103
subcutaneous_adipose_tissue_female_adult_51_years	chr15	52548942	52548974	52548973	-	RAMPAGE_only	6	7	13	1.070427	3.251629	chr15	52548772	52548988	DNA|TcMar-Tigger|MamRep434	-	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	0.923077
subcutaneous_adipose_tissue_female_adult_51_years	chr4	99315559	99315580	99315579	-	RAMPAGE_only	5	7	15	1.235108	3.378783	chr4	99315497	99315616	LINE|L2|L2a	+	chr4	99313504	99318867	ADH1B|ENST00000632775.1	-	99313504	99318867	0.866667
subcutaneous_adipose_tissue_female_adult_51_years	chr2	159428398	159428428	159428427	-	RAMPAGE_only	2	2	7	0.576384	2.521641	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	19	22	26	2.140854	4.403856	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.576923
subcutaneous_adipose_tissue_female_adult_51_years	chr12	132782351	132782395	132782351	-	RAMPAGE_only	7	7	41	3.375962	4.509385	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132768914	132822311	GOLGA3|ENST00000450791.6	-	132768914,132774156,132775140,132776633,132776957,132777665,132780797,132782295,132784163,132786338,132786692,132789026,132791215,132795851,132796538,132798339,132801766,132804715,132807176,132807890,132813306,132816539,132821995	132773294,132774320,132775305,132776756,132777090,132777805,132780914,132782493,132784307,132786555,132786787,132789290,132791293,132796220,132796700,132798477,132801969,132805022,132807288,132808549,132813419,132816812,132822311	0.926829
subcutaneous_adipose_tissue_female_adult_51_years	chr8	11864408	11864423	11864408	-	RAMPAGE_only	4	4	16	1.317449	3.875000	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr7	80594405	80594426	80594424	+	RAMPAGE_only	6	9	16	1.317449	3.506891	chr7	80594254	80594543	SINE|Alu|AluJo	-	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	1655395	1655478	1655409	-	RAMPAGE_only	34	34	75	6.175540	5.660429	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1645139	1658972	STRG.123.3	-	1645139,1649498,1652438,1655368,1657374,1658913	1645262,1649637,1652566,1655484,1657498,1658972	0.946667
subcutaneous_adipose_tissue_female_adult_51_years	chr9	129698737	129698746	129698737	+	RAMPAGE_only	4	7	16	1.317449	3.327820	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	162781349	162781418	162781388	+	RAMPAGE_only	5	5	29	2.387876	4.090234	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr4	73144770	73144797	73144770	-	RAMPAGE_only	3	3	6	0.494043	2.584963	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr14	68882879	68882971	68882879	-	High_confidence	6	7	38	3.128941	4.471354	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.921053
subcutaneous_adipose_tissue_female_adult_51_years	chr1	162597849	162597850	162597849	+	High_confidence	17	21	23	1.893832	3.916127	chr1	162597899	162598081	LINE|L1|L1MA7	+	chr1	162597240	162599799	UAP1|ENST00000486089.1	+	162597240,162599270	162597858,162599799	0.695652
subcutaneous_adipose_tissue_female_adult_51_years	chr11	117185994	117186007	117185994	+	High_confidence	3	3	7	0.576384	2.584963	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.857143
subcutaneous_adipose_tissue_female_adult_51_years	chr13	40350367	40350446	40350410	-	RAMPAGE_only	21	24	50	4.117027	4.849204	chr13	40350403	40350604	SINE|MIR|MIR3	+	chr13	40202034	40344743	STRG.83916.10	-	40202034,40217577,40337247	40207052,40217750,40344743	0.680000
subcutaneous_adipose_tissue_female_adult_51_years	chr10	93431479	93431495	93431479	-	RAMPAGE_only	4	4	10	0.823405	3.121928	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.900000
subcutaneous_adipose_tissue_female_adult_51_years	chr14	81170364	81170414	81170412	-	High_confidence	8	14	50	4.117027	4.109109	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.940000
subcutaneous_adipose_tissue_female_adult_51_years	chr6	107872865	107872888	107872865	-	RAMPAGE_only	3	3	11	0.905746	2.521928	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.909091
subcutaneous_adipose_tissue_female_adult_51_years	chr12	109247310	109247327	109247310	+	RAMPAGE_only	7	9	16	1.317449	3.452820	chr12	109247211	109247410	DNA|hAT-Charlie|MER106A	+	chr12	109232668	109266555	ACACB|ENST00000538526.5	+	109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064,109260479,109262356,109264231,109265109,109265388,109266235	109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260149,109260657,109262469,109264386,109265280,109265525,109266555	0.812500
subcutaneous_adipose_tissue_female_adult_51_years	chr17	632119	632120	632119	+	RAMPAGE_only	6	6	6	0.494043	2.584963	chr17	631967	632257	SINE|Alu|AluJr	+	chr17	1279662	1300987	TRARG1|ENST00000333813.3	+	1279662,1295490,1298250	1280388,1295623,1300987	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr8	39083065	39083066	39083065	+	RAMPAGE_only	9	9	12	0.988086	2.913977	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr10	102727663	102727697	102727679	+	RAMPAGE_only	3	3	16	1.317449	3.625000	chr10	102727660	102728003	LINE|L2|L2c	-	chr10	102714540	102739189	SFXN2|NM_178858.4	+	102714540,102726611,102726986,102728430,102729318,102729722,102731722,102732151,102732858,102733553,102735861,102737662	102714681,102726797,102727157,102728529,102729394,102729808,102731783,102732218,102732908,102733603,102735909,102739189	0.562500
subcutaneous_adipose_tissue_female_adult_51_years	chr4	4269605	4269610	4269609	-	High_confidence	5	6	14	1.152768	2.661226	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.928571
subcutaneous_adipose_tissue_female_adult_51_years	chr12	69832324	69832350	69832328	+	RAMPAGE_only	3	3	14	1.152768	3.664498	chr12	69832308	69832944	LINE|L2|L2a	-	chr12	69825322	69958726	MYRFL|NM_182530.2	+	69825322,69855279,69879027,69879194,69880200,69886819,69890970,69893763,69895370,69897155,69903643,69909968,69910820,69926570,69927684,69932512,69936112,69936282,69936452,69952112,69952798,69955362,69957821,69958248,69958444	69825563,69855370,69879095,69879453,69880292,69886970,69891166,69893840,69895481,69897246,69903844,69910077,69910930,69926734,69927748,69932598,69936187,69936335,69936632,69952175,69952886,69955437,69957942,69958323,69958726	0.642857
subcutaneous_adipose_tissue_female_adult_51_years	chr8	144106356	144106394	144106356	+	High_confidence	4	5	10	0.823405	2.846439	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.700000
subcutaneous_adipose_tissue_female_adult_51_years	chr19	51795157	51795210	51795162	+	High_confidence	4	4	15	1.235108	3.106891	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr15	89680954	89681016	89680976	-	RAMPAGE_only	14	15	29	2.387876	4.208410	chr15	89680899	89680988	LINE|L2|L2b	+	chr15	89664366	89679417	PLIN1|NM_002666.4	-	89664366,89666935,89667601,89669499,89669979,89671481,89673209,89677444,89679250	89665942,89667181,89667793,89669672,89670244,89671564,89673414,89677503,89679417	0.586207
subcutaneous_adipose_tissue_female_adult_51_years	chr8	32927976	32927984	32927976	+	RAMPAGE_only	13	15	25	2.058513	4.323856	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.800000
subcutaneous_adipose_tissue_female_adult_51_years	chr2	201168755	201168813	201168812	+	RAMPAGE_only	4	4	19	1.564470	3.836592	chr2	201168284	201170266	LINE|L1|L1P3	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	0.947368
subcutaneous_adipose_tissue_female_adult_51_years	chr15	45369702	45369707	45369702	-	High_confidence	9	9	20	1.646811	3.646439	chr15	45369640	45369710	LINE|L2|L2b	+	chr15	45364823	45369707	GATM|ENST00000558916.1	-	45364823,45366045,45366370,45368069,45369325	45364860,45366210,45366508,45368260,45369707	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr7	101217578	101217595	101217594	-	High_confidence	5	5	17	1.399789	3.202820	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.941176
subcutaneous_adipose_tissue_female_adult_51_years	chr20	35153044	35153074	35153044	+	High_confidence	3	3	20	1.646811	3.511085	chr20	35152901	35155074	Retroposon|SVA|SVA_F	+	chr20	35153138	35177362	STRG.107646.1	+	35153138,35170925,35172088,35174701,35176167,35176697	35153567,35171219,35172224,35174953,35176446,35177362	0.950000
subcutaneous_adipose_tissue_female_adult_51_years	chr9	114394380	114394413	114394412	-	High_confidence	4	6	10	0.823405	3.121928	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114359086	114394412	STRG.65787.2	-	114359086,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394412	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	109236990	109237018	109237017	+	RAMPAGE_only	5	5	14	1.152768	3.392747	chr12	109236619	109237053	DNA|TcMar-Tigger|Tigger12c	-	chr12	109232668	109266555	ACACB|ENST00000538526.5	+	109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064,109260479,109262356,109264231,109265109,109265388,109266235	109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260149,109260657,109262469,109264386,109265280,109265525,109266555	0.928571
subcutaneous_adipose_tissue_female_adult_51_years	chr2	215383357	215383373	215383357	-	High_confidence	4	4	11	0.905746	2.845351	chr2	215383001	215383307	SINE|Alu|AluSz	-	chr2	215379204	215383483	FN1|ENST00000490833.5	-	215379204,215380810,215382002,215382211,215383327	215379317,215381080,215382048,215382325,215383483	0.636364
subcutaneous_adipose_tissue_female_adult_51_years	chr17	41871754	41871820	41871819	-	RAMPAGE_only	4	4	18	1.482130	3.616875	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.888889
subcutaneous_adipose_tissue_female_adult_51_years	chr12	109260265	109260309	109260265	+	RAMPAGE_only	3	3	9	0.741065	2.641604	chr12	109260223	109260398	SINE|MIR|MIR3	-	chr12	109232668	109266555	ACACB|ENST00000538526.5	+	109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064,109260479,109262356,109264231,109265109,109265388,109266235	109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260149,109260657,109262469,109264386,109265280,109265525,109266555	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	27579337	27579357	27579356	+	RAMPAGE_only	5	5	10	0.823405	2.921928	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr17	70947790	70947828	70947790	-	High_confidence	4	5	26	2.140854	3.970176	chr17	70947384	70948869	LINE|L1|L1PB1	+	chr17	70778603	70947792	STRG.99829.1	-	70778603,70947679	70779229,70947792	0.538462
subcutaneous_adipose_tissue_female_adult_51_years	chr5	32403105	32403261	32403115	-	RAMPAGE_only	13	14	61	5.022773	5.135813	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354628	32415844	STRG.34874.2	-	32354628,32363947,32364163,32379114,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968	32355939,32364045,32364275,32379210,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415844	0.967213
subcutaneous_adipose_tissue_female_adult_51_years	chr18	7946867	7946888	7946887	+	High_confidence	8	8	34	2.799578	4.263933	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.911765
subcutaneous_adipose_tissue_female_adult_51_years	chr14	34586234	34586266	34586234	-	RAMPAGE_only	3	3	11	0.905746	3.095795	chr14	34585901	34586200	SINE|Alu|AluSg	-	chr14	34561093	34630109	SNX6|ENST00000396526.7	-	34561093,34567685,34567853,34575755,34581560,34586229,34593044,34597549,34603347,34605595,34608029,34609637,34629906	34563175,34567771,34568013,34575842,34581600,34586305,34593150,34597645,34603471,34605717,34608140,34609742,34630109	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr10	118322354	118322402	118322378	-	RAMPAGE_only	8	8	19	1.564470	3.947703	chr10	118322113	118322801	LINE|L1|L1MC4	+	chr10	118310635	118326349	FAM204A|ENST00000491416.5	-	118310635,118311206,118326153	118310908,118311313,118326349	0.578947
subcutaneous_adipose_tissue_female_adult_51_years	chr1	51403428	51403433	51403432	-	RAMPAGE_only	6	6	10	0.823405	2.921928	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chrX	136175618	136175629	136175628	+	RAMPAGE_only	7	7	12	0.988086	3.095795	chrX	136175160	136175815	LINE|L1|L1ME4c	+	chrX	136169925	136211359	FHL1|ENST00000345434.7	+	136169925,136206406,136207015,136207791,136208454,136209242,136209870	136169980,136206588,136207190,136207961,136208641,136209442,136211359	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr3	197913271	197913296	197913295	-	High_confidence	5	5	12	0.988086	3.277613	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.916667
subcutaneous_adipose_tissue_female_adult_51_years	chr1	12572757	12572846	12572757	-	RAMPAGE_only	8	8	52	4.281708	4.787731	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.980769
subcutaneous_adipose_tissue_female_adult_51_years	chr11	86921286	86921330	86921286	-	RAMPAGE_only	3	3	23	1.893832	4.201841	chr11	86921261	86921392	LINE|L2|L2a	+	chr11	86908989	86955886	STRG.75733.1	-	86908989,86954800,86955813	86922098,86955007,86955886	0.869565
subcutaneous_adipose_tissue_female_adult_51_years	chr9	33068832	33068884	33068846	-	RAMPAGE_only	3	3	13	1.070427	3.084963	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.923077
subcutaneous_adipose_tissue_female_adult_51_years	chr5	38468316	38468485	38468436	-	High_confidence	38	38	351	28.901529	6.935402	chr5	38468426	38468568	SINE|MIR|MIRc	-	chr5	38466162	38468452	STRG.35200.2	-	38466162,38468238	38466483,38468452	0.857550
subcutaneous_adipose_tissue_female_adult_51_years	chrX	111718118	111718167	111718166	+	High_confidence	2	2	8	0.658724	2.500000	chrX	111718150	111718232	LINE|L2|L2	-	chrX	111718218	111723881	ALG13|ENST00000490774.2	+	111718218,111720094,111721602,111723797	111718274,111720170,111721711,111723881	0.625000
subcutaneous_adipose_tissue_female_adult_51_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	16	16	16	1.317449	3.250000	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	116390280	116390332	116390289	+	RAMPAGE_only	3	3	22	1.811492	3.442862	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	112332681	112332716	112332715	-	RAMPAGE_only	8	15	23	1.893832	3.390805	chr1	112332676	112332755	DNA|hAT-Charlie|MER5A	+	chr1	112233194	112234847	STRG.4903.3	-	112233194	112234847	0.739130
subcutaneous_adipose_tissue_female_adult_51_years	chr15	81210011	81210033	81210032	+	RAMPAGE_only	8	8	17	1.399789	3.734522	chr15	81209880	81211048	LINE|L1|L1P4a	-	chr15	81196878	81314058	IL16|ENST00000394660.6	+	81196878,81225298,81259771,81265658,81269537,81273089,81278816,81279557,81282638,81285697,81290452,81292555,81296927,81299379,81301343,81303548,81305907,81306422,81308604	81197137,81225711,81259880,81265801,81269648,81273204,81278890,81279774,81282756,81285830,81290540,81293037,81297078,81300475,81301512,81303650,81306166,81306545,81314058	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr4	119263219	119263261	119263232	+	RAMPAGE_only	3	3	23	1.893832	3.827910	chr4	119263143	119263789	LINE|L1|L1ME1	+	chr4	119261792	119294638	STRG.31989.5	+	119261792,119268267,119269690,119271295,119273631,119291164,119292337	119267482,119268420,119269837,119272034,119273708,119291261,119294638	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr9	121313949	121314021	121314002	+	RAMPAGE_only	218	224	979	80.611388	6.223658	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.994893
subcutaneous_adipose_tissue_female_adult_51_years	chr10	70426448	70426491	70426490	+	RAMPAGE_only	3	3	14	1.152768	2.931209	chr10	70426249	70426576	SINE|Alu|AluSz	-	chr10	70404378	70428618	EIF4EBP2|ENST00000373218.4	+	70404378,70419913,70421715	70404546,70420099,70428618	0.928571
subcutaneous_adipose_tissue_female_adult_51_years	chr5	133089611	133089678	133089677	+	RAMPAGE_only	26	26	57	4.693411	5.238604	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr16	761085	761115	761100	+	High_confidence	4	4	18	1.482130	3.337175	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.944444
subcutaneous_adipose_tissue_female_adult_51_years	chr6	39865049	39865072	39865071	+	RAMPAGE_only	7	7	12	0.988086	3.095795	chr6	39865016	39865115	DNA|TcMar-Tigger|Tigger19b	-	chr6	39818750	39884643	STRG.43038.3	+	39818750,39856246,39860927,39864432,39864979,39867509,39868822,39870339,39871505,39873237,39875329,39878202,39878403,39883961	39822224,39856470,39861017,39864507,39865074,39867843,39868933,39870443,39871572,39873355,39875468,39878261,39879477,39884643	0.916667
subcutaneous_adipose_tissue_female_adult_51_years	chrX	100593611	100593640	100593611	+	High_confidence	2	2	8	0.658724	2.750000	chrX	100593595	100593649	LINE|CR1|L3	+	chrX	100593623	100599925	STRG.115117.2	+	100593623,100594260,100597503,100599015,100599507	100594035,100594362,100597657,100599182,100599925	0.875000
subcutaneous_adipose_tissue_female_adult_51_years	chr18	73691288	73691305	73691288	-	RAMPAGE_only	51	53	110	9.057459	5.938538	chr18	73691250	73691410	LTR|ERV1|MER41C	+	chr18	73645669	73655280	STRG.102933.1	-	73645669,73653601,73655244	73648396,73653732,73655280	0.600000
subcutaneous_adipose_tissue_female_adult_51_years	chr4	86453149	86453203	86453195	-	High_confidence	22	30	142	11.692357	4.831295	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016220	86453196	MAPK10|ENST00000641385.1	-	86016220,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107325,86159467,86194407,86354644,86453196	0.915493
subcutaneous_adipose_tissue_female_adult_51_years	chr11	90251204	90251205	90251204	+	High_confidence	13	15	15	1.235108	3.506891	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.666667
subcutaneous_adipose_tissue_female_adult_51_years	chr8	119988362	119988363	119988362	+	High_confidence	7	7	11	0.905746	3.121928	chr8	119985863	119988467	LINE|L1|L1P3	-	chr8	119989017	120050913	STRG.60091.2	+	119989017,120001524,120002976,120006804,120009028,120049575	119989114,120001710,120003111,120006875,120009133,120050913	0.909091
subcutaneous_adipose_tissue_female_adult_51_years	chr5	150779647	150779654	150779647	-	RAMPAGE_only	14	14	28	2.305535	4.324863	chr5	150779612	150779818	LINE|L2|L2a	+	chr5	150708439	150759109	DCTN4|ENST00000447998.6	-	150708439,150715564,150718275,150719715,150722906,150730630,150731043,150731415,150733367,150742113,150753478,150756416,150758858	150711362,150715662,150718383,150719770,150722980,150730740,150731156,150731489,150733475,150742157,150753657,150756487,150759109	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr17	4143199	4143215	4143199	+	High_confidence	52	53	117	9.633843	5.383991	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.974359
subcutaneous_adipose_tissue_female_adult_51_years	chr1	29166037	29166060	29166059	-	RAMPAGE_only	3	3	6	0.494043	2.584963	chr1	29165912	29166153	SINE|tRNA-RTE|MamSINE1	-	chr1	29154696	29160563	SRSF4|ENST00000497015.5	-	29154696,29159373,29160374	29154910,29159486,29160563	0.666667
subcutaneous_adipose_tissue_female_adult_51_years	chr14	64087849	64087850	64087849	+	RAMPAGE_only	10	11	11	0.905746	2.663533	chr14	64087899	64088180	SINE|Alu|AluSz	+	chr14	64075614	64226430	SYNE2|ENST00000394768.6	+	64075614,64078465,64080455,64081442,64087418,64087670,64089573,64090865,64093348,64097948,64098746,64101931,64107490,64113340,64119426,64120926,64122011,64122285,64125078,64126326,64126597,64128451,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64165284,64167232,64167494,64168876,64170227,64174943,64177357,64186423,64188549,64190070,64202800,64208757,64209427,64209941,64211960,64212810,64214193,64216247,64218397,64219207,64220436,64221575,64223188,64224460,64224995,64225318	64076100,64078606,64080638,64081580,64087487,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64122427,64125210,64126479,64126807,64128553,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64165410,64167387,64167639,64168971,64170462,64175138,64177483,64186579,64188708,64190237,64202963,64208945,64209578,64210124,64212098,64213005,64214470,64216387,64218512,64219410,64220637,64221704,64223380,64224547,64225045,64226430	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr2	200889279	200889318	200889293	-	High_confidence	14	14	32	2.634897	4.309035	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.781250
subcutaneous_adipose_tissue_female_adult_51_years	chr1	242001562	242001589	242001562	-	High_confidence	19	20	44	3.622984	4.957445	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	242001590	STRG.9355.1	-	241995489,241998513,241998775,241998950,242001308	241996385,241998620,241998831,241999026,242001590	0.909091
subcutaneous_adipose_tissue_female_adult_51_years	chr1	153967486	153967508	153967486	+	High_confidence	9	10	20	1.646811	3.576618	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.850000
subcutaneous_adipose_tissue_female_adult_51_years	chr19	49086519	49086547	49086520	+	High_confidence	30	36	85	6.998946	5.083792	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.964706
subcutaneous_adipose_tissue_female_adult_51_years	chr12	53464795	53464842	53464841	+	RAMPAGE_only	4	5	30	2.470216	3.647743	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479614	STRG.80209.12	+	53462513,53464759,53465931,53467220,53468776,53471637,53479405	53462567,53464852,53465973,53467293,53468832,53471807,53479614	0.866667
subcutaneous_adipose_tissue_female_adult_51_years	chrX	73837439	73837451	73837450	-	RAMPAGE_only	11	12	18	1.482130	3.461320	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.944444
subcutaneous_adipose_tissue_female_adult_51_years	chr7	130497232	130497233	130497232	+	High_confidence	10	10	12	0.988086	2.688722	chr7	130497281	130497565	SINE|Alu|AluSx	+	chr7	130498225	130505298	MEST|ENST00000463263.1	+	130498225,130498418,130499874,130500461,130500834,130502643,130503932,130504938	130498275,130498477,130499915,130500518,130500890,130502720,130503996,130505298	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr9	121463298	121463308	121463299	-	RAMPAGE_only	3	5	9	0.741065	2.750000	chr9	121463204	121463259	LINE|L2|L2	-	chr9	121446910	121467922	GGTA1P|ENST00000488429.5	-	121446910,121452145,121460103,121461253,121463292,121467846	121447595,121452275,121460219,121461314,121463328,121467922	0.666667
subcutaneous_adipose_tissue_female_adult_51_years	chr11	65441842	65442117	65441842	+	RAMPAGE_only	31	32	268	22.067265	5.793702	chr11	65441504	65441864	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.996269
subcutaneous_adipose_tissue_female_adult_51_years	chr1	46804345	46804370	46804345	+	RAMPAGE_only	22	22	56	4.611070	4.653724	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.607143
subcutaneous_adipose_tissue_female_adult_51_years	chr21	46256892	46256893	46256892	-	High_confidence	6	6	9	0.741065	2.947703	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.888889
subcutaneous_adipose_tissue_female_adult_51_years	chr14	27529239	27529240	27529239	+	RAMPAGE_only	9	12	13	1.070427	3.418296	chr14	27529044	27529416	LTR|ERVL-MaLR|THE1B	+	chr14	27612587	27639636	LINC00645|ENST00000557359.5	+	27612587,27613420,27634243,27636419	27612677,27613496,27634344,27639636	0.615385
subcutaneous_adipose_tissue_female_adult_51_years	chrX	19808757	19808818	19808800	-	RAMPAGE_only	5	6	18	1.482130	3.616875	chrX	19808523	19808908	LINE|L1|L1MCb	-	chrX	19533964	19799799	SH3KBP1|NM_001024666.2	-	19533964,19537716,19541924,19545921,19549973,19569102,19588642,19592066,19594948,19607937,19631863,19645399,19683822,19695611,19706880,19746317,19799633	19536458,19537780,19542193,19546050,19550083,19569188,19588802,19592147,19595000,19608045,19631958,19645475,19684028,19695741,19706984,19746441,19799799	0.888889
subcutaneous_adipose_tissue_female_adult_51_years	chr12	109179091	109179282	109179281	+	RAMPAGE_only	173	177	579	47.675172	6.019009	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109139396	109260147	ACACB|ENST00000377854.9	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260147	0.968912
subcutaneous_adipose_tissue_female_adult_51_years	chr14	50756903	50757042	50756942	-	RAMPAGE_only	7	9	38	3.128941	4.681881	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.973684
subcutaneous_adipose_tissue_female_adult_51_years	chr11	94873574	94873600	94873599	+	RAMPAGE_only	5	5	13	1.070427	3.392747	chr11	94873471	94873673	SINE|MIR|MIRb	-	chr11	94768370	94876753	AMOTL1|ENST00000433060.2	+	94768370,94795010,94799389,94821529,94830049,94831451,94850113,94853932,94859524,94864734,94865941,94869197,94870688	94768560,94795160,94800311,94821821,94830194,94831541,94850259,94854082,94859715,94864860,94866168,94869473,94876753	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr14	95481748	95481766	95481761	-	RAMPAGE_only	75	85	141	11.610016	5.928196	chr14	95481614	95481737	LTR|ERVL|LTR33A_	-	chr14	95443660	95475836	SYNE3|ENST00000553340.1	-	95443660,95445908,95449930,95452246,95455376,95457176,95465930,95467794,95475677	95444628,95446091,95450105,95452383,95455724,95457338,95466240,95467967,95475836	0.921986
subcutaneous_adipose_tissue_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	408	490	898	73.941805	5.760012	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.983296
subcutaneous_adipose_tissue_female_adult_51_years	chr9	68975832	68975855	68975854	-	High_confidence	14	14	55	4.528730	5.012911	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.581818
subcutaneous_adipose_tissue_female_adult_51_years	chr20	62367056	62367057	62367056	-	High_confidence	8	8	11	0.905746	2.721928	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.909091
subcutaneous_adipose_tissue_female_adult_51_years	chr3	52969125	52969141	52969125	-	RAMPAGE_only	4	4	9	0.741065	2.750000	chr3	52968909	52969093	LINE|L2|L2c	-	chr3	52943322	52954730	STRG.21995.1	-	52943322,52954316	52943593,52954730	0.666667
subcutaneous_adipose_tissue_female_adult_51_years	chr13	27445105	27445120	27445105	-	RAMPAGE_only	9	9	18	1.482130	4.087463	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.944444
subcutaneous_adipose_tissue_female_adult_51_years	chr6	79631425	79631460	79631425	+	High_confidence	2	2	11	0.905746	2.721928	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.909091
subcutaneous_adipose_tissue_female_adult_51_years	chr1	221976518	221976542	221976541	-	High_confidence	4	4	15	1.235108	3.640224	chr1	221975431	221978506	LTR|ERV1|HERVH-int	-	chr1	221913761	221976397	STRG.8586.1	-	221913761,221914422,221918591,221976286	221913858,221914531,221918712,221976397	0.733333
subcutaneous_adipose_tissue_female_adult_51_years	chr21	34512187	34512220	34512209	-	High_confidence	7	7	21	1.729151	4.011365	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.666667
subcutaneous_adipose_tissue_female_adult_51_years	chr14	95417383	95417440	95417383	-	RAMPAGE_only	11	11	36	2.964259	4.712319	chr14	95416933	95417361	DNA|TcMar-Tigger|Tigger15a	-	chr14	95407265	95475836	SYNE3|ENST00000557275.5	-	95407265,95432078,95433259,95436819,95439032,95439611,95439913,95443154,95444484,95445908,95449930,95452246,95455376,95457176,95465930,95467794,95475677	95418026,95432117,95433409,95436966,95439162,95439784,95440075,95443289,95444628,95446091,95450105,95452383,95455724,95457338,95466240,95467967,95475836	0.944444
subcutaneous_adipose_tissue_female_adult_51_years	chr17	39969536	39969542	39969536	+	RAMPAGE_only	3	3	8	0.658724	2.500000	chr17	39969366	39969704	LINE|L2|L2c	-	chr17	39962972	39977766	GSDMA|NM_178171.4	+	39962972,39965682,39966259,39970481,39971523,39972128,39972586,39973809,39974272,39974899,39975923,39976815	39963085,39965901,39966437,39970647,39971620,39972176,39972613,39973830,39974427,39975014,39975997,39977766	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr3	52518344	52518345	52518344	+	High_confidence	7	7	11	0.905746	2.721928	chr3	52518378	52518454	SINE|MIR|MIR3	+	chr3	52518800	52523476	STAB1|ENST00000481626.5	+	52518800,52519263,52519943,52520399,52520641,52521360,52521595,52521843,52522036,52522329,52522554,52522774,52523024,52523221,52523426	52518869,52519564,52520290,52520549,52521005,52521510,52521700,52521951,52522230,52522474,52522688,52522940,52523134,52523341,52523476	0.727273
subcutaneous_adipose_tissue_female_adult_51_years	chr11	119046623	119046641	119046623	-	RAMPAGE_only	2	3	11	0.905746	2.663533	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr14	101120846	101120853	101120846	+	High_confidence	2	2	7	0.576384	2.521641	chr14	101120596	101120905	LTR|ERVL-MaLR|MLT1J2	-	chr14	101120855	101123542	LINC02285|ENST00000557121.1	+	101120855,101122888	101121144,101123542	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	46979559	46979581	46979559	+	RAMPAGE_only	5	6	12	0.988086	2.663533	chr1	46975973	46982143	LINE|L1|L1PA6	+	chr1	46967662	46983767	STRG.2212.1	+	46967662	46983767	0.916667
subcutaneous_adipose_tissue_female_adult_51_years	chr10	45000263	45000273	45000266	+	High_confidence	12	17	56	4.611070	4.905363	chr10	45000000	45000445	LINE|L2|L2	-	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr17	8310227	8310257	8310254	+	High_confidence	2	2	8	0.658724	2.750000	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr5	151687139	151687251	151687250	-	High_confidence	13	19	126	10.374908	6.258458	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151662487	151687231	STRG.40250.1	-	151662487,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687231	0.579365
subcutaneous_adipose_tissue_female_adult_51_years	chr3	29924782	29924790	29924789	+	High_confidence	16	18	25	2.058513	2.886842	chr3	29924556	29924859	SINE|Alu|AluSp	+	chr3	29924750	29991197	RBMS3|ENST00000473799.1	+	29924750,29936085,29944206,29988142,29991081	29925243,29936196,29944254,29988223,29991197	0.960000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	110897833	110897876	110897875	+	RAMPAGE_only	4	4	15	1.235108	3.182006	chr1	110897898	110898002	SINE|MIR|MIR	+	chr1	110894308	110899851	CD53|ENST00000497404.1	+	110894308,110894959,110899123	110894401,110895055,110899851	0.933333
subcutaneous_adipose_tissue_female_adult_51_years	chr1	161206444	161206445	161206444	+	High_confidence	4	5	7	0.576384	2.807355	chr1	161206361	161206444	SINE|tRNA|LFSINE_Vert	+	chr1	161206408	161214296	STRG.6479.3	+	161206408,161209192,161209482,161209856,161210110,161210303,161210590,161212350,161213379,161213648,161213863,161214155	161206597,161209313,161209595,161209931,161210188,161210389,161210710,161212480,161213475,161213732,161213921,161214296	0.857143
subcutaneous_adipose_tissue_female_adult_51_years	chr5	34244778	34244812	34244780	-	RAMPAGE_only	5	7	13	1.070427	2.931209	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34218343	AC138409.2|ENST00000507274.1	-	34175821,34179012,34182679,34218294	34175957,34179097,34182867,34218343	0.923077
subcutaneous_adipose_tissue_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	97	99	99	8.151713	5.213114	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.939394
subcutaneous_adipose_tissue_female_adult_51_years	chr2	45192665	45192666	45192665	-	High_confidence	5	7	8	0.658724	2.807355	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45187169	45192285	LINC01121|ENST00000454673.1	-	45187169,45192139	45189249,45192285	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr3	135965673	135965749	135965723	+	High_confidence	14	17	92	7.575330	5.574821	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.989130
subcutaneous_adipose_tissue_female_adult_51_years	chr3	151539200	151539282	151539265	-	RAMPAGE_only	5	7	50	4.117027	4.669275	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.640000
subcutaneous_adipose_tissue_female_adult_51_years	chr13	40377261	40377262	40377261	-	High_confidence	4	5	7	0.576384	2.521641	chr13	40376963	40377218	LINE|L2|L2a	-	chr13	40335182	40377697	STRG.83916.7	-	40335182,40343956,40350108,40377050	40337410,40344205,40350302,40377697	0.714286
subcutaneous_adipose_tissue_female_adult_51_years	chr2	100192419	100192420	100192419	-	RAMPAGE_only	4	5	7	0.576384	2.584963	chr2	100192079	100192499	LTR|ERVL-MaLR|MLT1L	-	chr2	100007336	100142583	AFF3|ENST00000416492.5	-	100007336,100008811,100104401,100129223,100142483	100007460,100008932,100104518,100129306,100142583	0.571429
subcutaneous_adipose_tissue_female_adult_51_years	chr3	52501517	52501518	52501517	+	RAMPAGE_only	4	4	7	0.576384	2.584963	chr3	52501481	52501543	LINE|L2|L2b	-	chr3	52495358	52508543	STAB1|ENST00000481607.1	+	52495358,52501165,52501637,52502005,52502158,52502631,52502998,52503343,52503771,52504027,52504460,52504738,52505002,52505318,52505667,52505882,52506169,52506691,52507612,52507930,52508272	52495491,52501302,52501753,52502091,52502228,52502727,52503109,52503540,52503902,52504155,52504549,52504876,52505143,52505381,52505781,52505936,52506250,52506850,52507675,52508026,52508543	0.857143
subcutaneous_adipose_tissue_female_adult_51_years	chr15	90467526	90467554	90467553	+	RAMPAGE_only	4	4	11	0.905746	3.277613	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.636364
subcutaneous_adipose_tissue_female_adult_51_years	chr10	62056853	62056873	62056853	+	RAMPAGE_only	5	6	14	1.152768	2.931209	chr10	62056749	62056941	DNA|hAT-Charlie|MER58A	+	chr10	62049210	62064801	STRG.69195.3	+	62049210,62050887,62057116	62049483,62051000,62064801	0.928571
subcutaneous_adipose_tissue_female_adult_51_years	chr1	77169285	77169313	77169312	-	RAMPAGE_only	5	5	13	1.070427	2.855389	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77088989	77219426	PIGK|ENST00000370812.7	-	77088989,77122274,77154448,77161294,77161593,77163845,77166718,77169259,77206639,77210435,77219309	77092490,77122359,77154621,77161405,77161711,77163942,77166830,77169395,77206731,77210489,77219426	0.923077
subcutaneous_adipose_tissue_female_adult_51_years	chr14	22909560	22909561	22909560	-	RAMPAGE_only	8	9	9	0.741065	2.750000	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22905093	22905953	RBM23|ENST00000553738.5	-	22905093,22905335,22905605	22905246,22905453,22905953	0.555556
subcutaneous_adipose_tissue_female_adult_51_years	chr17	79030180	79030205	79030180	+	RAMPAGE_only	10	10	62	5.105113	5.019547	chr17	79030152	79030319	LINE|L1|L1ME4a	-	chr17	79034184	79048247	C1QTNF1|ENST00000581774.5	+	79034184,79043954,79046554,79047537	79034533,79044123,79046694,79048247	0.870968
subcutaneous_adipose_tissue_female_adult_51_years	chr4	79492539	79492596	79492595	+	High_confidence	14	14	52	4.281708	4.129589	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492595	79514489	STRG.30326.2	+	79492595,79493151,79513784	79492623,79493585,79514489	0.846154
subcutaneous_adipose_tissue_female_adult_51_years	chr5	181060347	181060402	181060385	+	RAMPAGE_only	14	20	35	2.881919	4.454822	chr5	181060059	181060589	LINE|L1|L1MC4	+	chr5	181040224	181061523	BTNL9|ENST00000327705.13	+	181040224,181045466,181047926,181050087,181053199,181053468,181054238,181055432,181055988,181058351,181059236	181040432,181045598,181048271,181050369,181053316,181053501,181054259,181055453,181056015,181058378,181061523	0.971429
subcutaneous_adipose_tissue_female_adult_51_years	chr7	131075992	131075993	131075992	-	RAMPAGE_only	7	9	11	0.905746	3.277613	chr7	131075705	131076129	LTR|ERVL-MaLR|MSTC	-	chr7	131073682	131093595	STRG.55413.10	-	131073682,131086218	131086198,131093595	0.909091
subcutaneous_adipose_tissue_female_adult_51_years	chr9	77822994	77822998	77822994	-	RAMPAGE_only	8	8	22	1.811492	3.177566	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77797527	78030604	GNAQ|ENST00000411677.1	-	77797527,77815615,77922160,78030514	77797648,77815770,77922345,78030604	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	26284538	26284551	26284538	-	RAMPAGE_only	5	5	11	0.905746	2.845351	chr1	26284514	26284630	SINE|MIR|MIR3	-	chr1	26282304	26298026	UBXN11|ENST00000496466.1	-	26282304,26282648,26282863,26284141,26284361,26285822,26294204,26296918,26297426,26297961	26282569,26282789,26282937,26284281,26285541,26286037,26294331,26296995,26297481,26298026	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr17	59892710	59892741	59892716	-	High_confidence	3	3	13	1.070427	3.251629	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.846154
subcutaneous_adipose_tissue_female_adult_51_years	chr3	186855304	186855989	186855459	+	RAMPAGE_only	25	28	777	63.978599	7.376820	chr3	186855459	186855753	SINE|Alu|AluSz6	-	chr3	186842703	186858463	ADIPOQ|ENST00000444204.2	+	186842703,186845556,186853050,186854183	186842749,186845607,186853272,186858463	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr5	55982737	55982800	55982799	-	High_confidence	6	6	22	1.811492	3.624680	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.954545
subcutaneous_adipose_tissue_female_adult_51_years	chr2	191682554	191682576	191682554	+	RAMPAGE_only	2	2	9	0.741065	3.000000	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191686157	STRG.17556.10	+	191678989,191681945,191682491,191684229,191685598	191679128,191682017,191683804,191684296,191686157	0.888889
subcutaneous_adipose_tissue_female_adult_51_years	chr1	33021370	33021399	33021393	-	High_confidence	3	3	10	0.823405	3.169925	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010518	33021690	STRG.1336.5	-	33010518,33014521,33021366,33021592	33013402,33014594,33021461,33021690	0.800000
subcutaneous_adipose_tissue_female_adult_51_years	chr6	144533090	144533142	144533101	+	RAMPAGE_only	4	4	23	1.893832	4.055958	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	109262366	109262468	109262447	+	High_confidence	15	17	149	12.268740	5.858201	chr12	109262492	109262615	DNA|hAT-Tip100|MamRep4096	+	chr12	109263021	109266941	ACACB|ENST00000537279.1	+	109263021,109265109,109265388,109266235	109264386,109265280,109265525,109266941	0.973154
subcutaneous_adipose_tissue_female_adult_51_years	chr15	51910391	51910429	51910391	+	RAMPAGE_only	4	4	13	1.070427	2.777363	chr15	51910292	51910597	SINE|Alu|AluSz	+	chr15	51849082	51912845	STRG.91415.2	+	51849082,51862810,51869216,51887588,51889055,51893814,51896418,51900154,51901891,51908775	51849137,51863010,51869373,51887711,51889145,51893945,51896526,51900298,51902036,51912845	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr6	31587247	31587275	31587258	+	High_confidence	6	6	15	1.235108	3.139572	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	0.733333
subcutaneous_adipose_tissue_female_adult_51_years	chr11	83117394	83117421	83117394	-	High_confidence	2	2	10	0.823405	2.725481	chr11	83117252	83117471	SINE|Alu|AluSz6	+	chr11	83111521	83117351	STRG.75368.1	-	83111521,83117124	83111700,83117351	0.900000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	16017942	16017956	16017955	-	High_confidence	11	14	19	1.564470	3.642150	chr1	16017886	16017984	LINE|CR1|L3	+	chr1	16015498	16018005	HSPB7|ENST00000406363.2	-	16015498,16017073,16017764	16015759,16017219,16018005	0.736842
subcutaneous_adipose_tissue_female_adult_51_years	chr5	150118788	150118815	150118788	-	RAMPAGE_only	3	3	15	1.235108	3.039149	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.933333
subcutaneous_adipose_tissue_female_adult_51_years	chr1	89272843	89272887	89272867	-	High_confidence	5	5	34	2.799578	4.210765	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.941176
subcutaneous_adipose_tissue_female_adult_51_years	chr22	42644558	42644626	42644615	-	High_confidence	20	23	148	12.186400	5.908051	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr11	65434497	65434667	65434588	+	RAMPAGE_only	16	18	127	10.457249	5.817282	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.968504
subcutaneous_adipose_tissue_female_adult_51_years	chr20	35153140	35153161	35153140	+	High_confidence	6	9	26	2.140854	3.909275	chr20	35152901	35155074	Retroposon|SVA|SVA_F	+	chr20	35153138	35177362	STRG.107646.1	+	35153138,35170925,35172088,35174701,35176167,35176697	35153567,35171219,35172224,35174953,35176446,35177362	0.961538
subcutaneous_adipose_tissue_female_adult_51_years	chr21	28674847	28674856	28674853	-	High_confidence	4	4	12	0.988086	3.251629	chr21	28674675	28675025	LTR|ERVL-MaLR|MLT1A0	-	chr21	28439345	28674848	AF165147.1|ENST00000433310.6	-	28439345,28446289,28577218,28626584,28674646	28444809,28446472,28577380,28626676,28674848	0.666667
subcutaneous_adipose_tissue_female_adult_51_years	chr12	123390707	123390726	123390725	+	High_confidence	6	6	10	0.823405	2.725481	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123390474	123409350	STRG.82888.1	+	123390474,123395046,123396344,123403572,123404883,123407492	123390786,123395266,123396432,123403632,123405074,123409350	0.900000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	246609303	246609304	246609303	+	RAMPAGE_only	10	10	10	0.823405	3.321928	chr1	246609293	246609589	SINE|Alu|AluSq2	+	chr1	246569766	246668469	STRG.9486.2	+	246569766,246591511,246621428,246631893,246633923,246634472,246641748,246641940,246647138,246660198,246665699	246569990,246591941,246621634,246631924,246634010,246634587,246641770,246642037,246648037,246660334,246668469	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr7	80594497	80594587	80594497	+	RAMPAGE_only	14	16	87	7.163627	5.493699	chr7	80594543	80594710	LINE|RTE-X|L4_C_Mam	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.770115
subcutaneous_adipose_tissue_female_adult_51_years	chr2	87469947	87469950	87469947	+	High_confidence	5	5	9	0.741065	2.725481	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87469577	87470812	STRG.13323.1	+	87469577	87470812	0.777778
subcutaneous_adipose_tissue_female_adult_51_years	chr14	102235458	102235481	102235458	-	High_confidence	6	6	20	1.646811	3.642150	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.950000
subcutaneous_adipose_tissue_female_adult_51_years	chr9	110170751	110170878	110170775	+	RAMPAGE_only	13	13	99	8.151713	5.476266	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	0.979798
subcutaneous_adipose_tissue_female_adult_51_years	chr3	54637852	54637886	54637852	-	RAMPAGE_only	5	7	16	1.317449	3.625000	chr3	54636818	54639750	LTR|ERV1|HERVH-int	-	chr3	54632121	54639857	ESRG|ENST00000583516.1	-	54632121,54633558,54634460,54637690	54632807,54633740,54634565,54639857	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr5	151182122	151182183	151182135	-	RAMPAGE_only	3	3	19	1.564470	3.836592	chr5	151182086	151182249	SINE|MIR|MIRc	+	chr5	151181234	151185215	CCDC69|ENST00000519448.1	-	151181234,151184343	151183614,151185215	0.789474
subcutaneous_adipose_tissue_female_adult_51_years	chr22	35666942	35666976	35666975	+	RAMPAGE_only	4	4	8	0.658724	2.750000	chr22	35666573	35667325	LTR|ERV1|MER4-int	+	chr22	35648394	35668409	APOL6|ENST00000409652.4	+	35648394,35656378,35658614	35648623,35656475,35668409	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr14	50756741	50756766	50756741	-	RAMPAGE_only	2	3	11	0.905746	3.121928	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.818182
subcutaneous_adipose_tissue_female_adult_51_years	chr2	179043807	179043808	179043807	-	RAMPAGE_only	48	48	51	4.199368	5.079449	chr2	179042647	179044414	LINE|L1|L1PA10	+	chr2	178669624	179050052	STRG.16822.2	-	178669624,178670217,178671089,178671970,178672406,178672634,178673632,178674313,178675038,178675920,178677200,178677620,178678124,178678413,178678746,178679338,178679598,178679893,178680253,178681078,178681375,178681660,178682696,178683210,178683998,178684329,178684665,178684905,178685252,178685517,178688110,178688676,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453,178704146,178704509,178704876,178705173,178706453,178706861,178707525,178709565,178710634,178711061,178711943,178712314,178712696,178713084,178713896,178714291,178714985,178715492,178717094,178717522,178717942,178718321,178718694,178719163,178719553,178719982,178720384,178720920,178721846,178722258,178722658,178723045,178723417,178723855,178724259,178725367,178725767,178727089,178727584,178728109,178728499,178728890,178729287,178729663,178730092,178730504,178730924,178731304,178731692,178732065,178732439,178732833,178733238,178733613,178734327,178734706,178735510,178738081,178753123,178758983,178764176,178764526,178766380,178767758,178768013,178768672,178769678,178770059,178770411,178771210,178773108,178773461,178773837,178774206,178774920,178775355,178777148,178777419,178777703,178778873,178779228,178779999,178781120,178782211,178782538,178782805,178783719,178784069,178785619,178785847,178792071,178793403,178794398,178794921,178799486,178799824,178800394,178802137,178804551,178817525,178825312,178830664,178834355,178836893,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900,178886751,178888526,178905328,178915596,178918712,178944534,178961229,178975056,178978483,179047283,179049839	178669675,178670295,178671170,178672267,178672481,178672703,178673710,178674409,178675113,178675995,178677287,178677917,178678208,178678497,178678830,178679416,178679682,178680055,178680331,178681171,178681450,178681738,178682903,178683291,178684082,178684413,178684749,178684989,178685330,178685598,178688224,178688778,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702663,178704407,178704777,178704966,178705357,178706739,178706954,178707813,178709856,178710922,178711349,178712222,178712593,178712975,178713372,178714175,178714573,178715264,178715774,178717382,178717810,178718221,178718600,178718973,178719451,178719832,178720264,178720663,178721202,178722134,178722546,178722937,178723324,178723696,178724143,178724538,178725649,178726046,178727371,178727863,178728397,178728778,178729169,178729566,178729945,178730371,178730792,178731203,178731583,178731971,178732347,178732718,178733121,178733517,178733892,178734606,178734988,178736074,178738360,178753180,178759172,178764302,178764811,178766612,178767924,178768155,178768933,178769939,178770320,178770675,178771471,178773369,178773725,178774110,178774473,178775202,178777049,178777317,178777584,178777975,178779118,178779462,178780205,178781263,178782427,178782602,178783064,178783785,178784351,178785742,178786141,178792197,178793541,178794551,178795252,178799731,178799910,178800682,178802341,178804655,178817680,178825495,178830795,178834440,178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178885092,178886871,178888668,178905501,178915807,178918907,178944651,178961483,178975165,178978675,179047406,179050052	0.745098
subcutaneous_adipose_tissue_female_adult_51_years	chr14	57274833	57274834	57274833	+	RAMPAGE_only	5	5	7	0.576384	2.584963	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.857143
subcutaneous_adipose_tissue_female_adult_51_years	chr16	81181290	81181331	81181330	-	High_confidence	32	32	54	4.446389	5.218118	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.870370
subcutaneous_adipose_tissue_female_adult_51_years	chr5	42175250	42175291	42175290	-	High_confidence	54	55	130	10.704270	5.181039	chr5	42175074	42175255	LTR|ERVL-MaLR|MSTC	-	chr5	42155832	42175345	LOC101926960|NR_104636.1	-	42155832,42159026,42159336,42175152	42157411,42159053,42159446,42175345	0.746154
subcutaneous_adipose_tissue_female_adult_51_years	chr3	195689341	195689361	195689360	+	High_confidence	3	3	7	0.576384	2.584963	chr3	195689376	195689522	LINE|L1|L1MC5a	+	chr3	195689424	195696554	MUC20-OT1|ENST00000626677.1	+	195689424,195696360	195689608,195696554	0.714286
subcutaneous_adipose_tissue_female_adult_51_years	chr1	221969430	221969444	221969443	-	RAMPAGE_only	4	4	9	0.741065	2.750000	chr1	221969336	221969484	LTR|ERV1|HERVH-int	+	chr1	221913761	221976397	STRG.8586.1	-	221913761,221914422,221918591,221976286	221913858,221914531,221918712,221976397	0.555556
subcutaneous_adipose_tissue_female_adult_51_years	chrX	118727191	118727209	118727191	+	High_confidence	2	2	10	0.823405	3.121928	chrX	118727146	118727201	SINE|MIR|MIRc	-	chrX	118727571	118794539	IL13RA1|ENST00000371666.7	+	118727571,118741016,118746953,118749657,118758054,118761137,118766529,118766843,118773878,118776426,118791761	118727726,118741156,118747092,118749778,118758242,118761289,118766577,118766976,118773975,118776511,118794539	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr7	128622497	128622529	128622497	+	RAMPAGE_only	4	4	13	1.070427	3.334679	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128577666	128626473	STRG.55243.8	+	128577666,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128578033,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.846154
subcutaneous_adipose_tissue_female_adult_51_years	chr6	127330831	127330860	127330831	-	High_confidence	3	3	10	0.823405	3.169925	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.700000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	12788657	12788683	12788682	+	RAMPAGE_only	5	5	19	1.564470	3.350209	chr12	12788575	12788762	DNA|hAT-Charlie|MER5A	+	chr12	12785606	12791466	APOLD1|NM_030817.2	+	12785606,12786908	12785694,12791466	0.947368
subcutaneous_adipose_tissue_female_adult_51_years	chrX	54998786	54998789	54998788	-	High_confidence	10	14	16	1.317449	3.640224	chrX	54998783	54998927	LINE|L1|L1ME4c	+	chrX	54955040	54998797	STRG.113537.2	-	54955040,54958305,54958850,54959826,54960823,54963256,54998405	54956274,54958362,54958925,54959893,54960917,54963382,54998797	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr7	154928480	154928504	154928503	+	High_confidence	11	12	22	1.811492	3.921928	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.863636
subcutaneous_adipose_tissue_female_adult_51_years	chr7	111413972	111413989	111413972	-	High_confidence	6	6	20	1.646811	3.932138	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	111404801	111414620	STRG.54635.1	-	111404801	111414620	0.650000
subcutaneous_adipose_tissue_female_adult_51_years	chr4	158173024	158173025	158173024	-	High_confidence	23	25	27	2.223195	4.293661	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.592593
subcutaneous_adipose_tissue_female_adult_51_years	chr5	150115565	150115606	150115565	-	RAMPAGE_only	2	3	9	0.741065	2.725481	chr5	150115432	150115598	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr13	30429288	30429289	30429288	-	RAMPAGE_only	4	6	6	0.494043	2.584963	chr13	30428989	30429302	SINE|Alu|AluSq2	+	chr13	30202629	30307487	KATNAL1|NM_032116.4	-	30202629,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30307330	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307487	0.833333
subcutaneous_adipose_tissue_female_adult_51_years	chr8	85378112	85378113	85378112	-	High_confidence	15	16	16	1.317449	3.323231	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.937500
subcutaneous_adipose_tissue_female_adult_51_years	chr1	171268995	171268996	171268995	+	RAMPAGE_only	9	9	12	0.988086	2.732159	chr1	171268815	171269160	LTR|ERVL-MaLR|THE1B	+	chr1	171275345	171283196	FMO1|ENST00000472893.1	+	171275345,171278728,171280785,171281977,171283143	171275508,171278871,171280985,171282065,171283196	0.833333
subcutaneous_adipose_tissue_female_adult_51_years	chr8	102275539	102275610	102275539	-	RAMPAGE_only	3	3	18	1.482130	3.454822	chr8	102275368	102275493	LINE|L1|L1ME3E	-	chr8	102271193	102276820	UBR5|ENST00000521566.1	-	102271193,102272528,102275520,102275707,102276773	102271245,102272772,102275619,102275828,102276820	0.944444
subcutaneous_adipose_tissue_female_adult_51_years	chr5	40981752	40981772	40981752	+	RAMPAGE_only	2	2	9	0.741065	2.750000	chr5	40981792	40981922	SINE|MIR|MIR3	+	chr5	40909496	40982939	C7|NM_000587.2	+	40909496,40928579,40931063,40934324,40936337,40937551,40945197,40947601,40949903,40955386,40958032,40959448,40962084,40964740,40972402,40976749,40979724,40981391	40909616,40928635,40931139,40934466,40936485,40937690,40945368,40947845,40950014,40955553,40958261,40959620,40962172,40964873,40972594,40976840,40979909,40982939	0.888889
subcutaneous_adipose_tissue_female_adult_51_years	chr10	35449700	35449732	35449714	+	RAMPAGE_only	3	3	18	1.482130	3.461320	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.722222
subcutaneous_adipose_tissue_female_adult_51_years	chr1	39310282	39310305	39310282	+	RAMPAGE_only	6	6	20	1.646811	3.892407	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39302688	39357775	STRG.1538.9	+	39302688,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39331202,39337181,39340501,39340803,39346976,39350784,39353006,39357374	39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39336653,39337331,39340717,39340953,39349627,39351018,39353231,39357775	0.950000
subcutaneous_adipose_tissue_female_adult_51_years	chr7	74052535	74052560	74052535	+	High_confidence	4	4	10	0.823405	2.721928	chr7	74052324	74052610	SINE|Alu|AluJr	+	chr7	74052850	74056347	ELN|ENST00000492210.1	+	74052850,74054715,74056270	74053309,74054769,74056347	0.500000
subcutaneous_adipose_tissue_female_adult_51_years	chr20	3795750	3795789	3795750	+	High_confidence	22	22	84	6.916605	5.575303	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795747	3796678	STRG.106566.1	+	3795747	3796678	0.654762
subcutaneous_adipose_tissue_female_adult_51_years	chr15	80059918	80059933	80059918	+	High_confidence	119	137	256	21.079178	5.721306	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.980469
subcutaneous_adipose_tissue_female_adult_51_years	chr19	9700673	9700674	9700673	-	High_confidence	10	11	11	0.905746	2.921928	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.818182
subcutaneous_adipose_tissue_female_adult_51_years	chr11	10367827	10367837	10367836	+	RAMPAGE_only	6	7	13	1.070427	2.968919	chr11	10367639	10368001	LTR|ERVL-MaLR|THE1B	+	chr11	10450676	10507579	AMPD3|NM_000480.2	+	10450676,10461514,10478525,10482062,10484819,10487234,10493348,10494898,10495569,10496811,10500085,10501469,10502720,10504548,10505707	10451043,10461740,10478730,10482225,10485039,10487364,10493543,10495030,10495733,10496938,10500249,10501590,10502894,10504659,10507579	0.846154
subcutaneous_adipose_tissue_female_adult_51_years	chr12	69353531	69353571	69353556	+	RAMPAGE_only	4	6	18	1.482130	3.286896	chr12	69353494	69353787	SINE|Alu|AluY	-	chr12	69348353	69354233	LYZ|NM_000239.2	+	69348353,69350107,69352219,69353152	69348544,69350272,69352298,69354233	0.888889
subcutaneous_adipose_tissue_female_adult_51_years	chr16	30499550	30499565	30499550	-	High_confidence	4	4	12	0.988086	3.251629	chr16	30499510	30499629	SINE|MIR|MIR1_Amn	+	chr16	30498765	30499554	AC116348.2|ENST00000563751.1	-	30498765,30499363	30499151,30499554	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	15	15	16	1.317449	3.056565	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	0.937500
subcutaneous_adipose_tissue_female_adult_51_years	chr13	40325698	40325769	40325768	-	RAMPAGE_only	4	4	14	1.152768	3.378783	chr13	40324227	40325846	LINE|L1|L1MEc	-	chr13	40321115	40332487	STRG.83957.1	-	40321115	40332487	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr20	35153403	35153487	35153486	+	High_confidence	4	7	33	2.717238	4.562500	chr20	35152901	35155074	Retroposon|SVA|SVA_F	+	chr20	35153138	35177362	STRG.107646.1	+	35153138,35170925,35172088,35174701,35176167,35176697	35153567,35171219,35172224,35174953,35176446,35177362	0.909091
subcutaneous_adipose_tissue_female_adult_51_years	chr3	33838256	33838284	33838256	+	RAMPAGE_only	13	13	27	2.223195	4.403856	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.814815
subcutaneous_adipose_tissue_female_adult_51_years	chr10	118311667	118311697	118311667	-	High_confidence	2	2	8	0.658724	2.750000	chr10	118311545	118311893	DNA|hAT-Charlie|Charlie19a	+	chr10	118310413	118311486	FAM204A|ENST00000467890.1	-	118310413,118311206	118310908,118311486	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr6	36540276	36540277	36540276	-	RAMPAGE_only	16	16	16	1.317449	3.875000	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36499411	36547452	STRG.42707.2	-	36499411,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540204,36547452	0.875000
subcutaneous_adipose_tissue_female_adult_51_years	chr19	9140393	9140428	9140393	+	High_confidence	22	22	61	5.022773	5.104403	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.688525
subcutaneous_adipose_tissue_female_adult_51_years	chr11	118635518	118635536	118635535	+	RAMPAGE_only	7	7	17	1.399789	3.750000	chr11	118635581	118635763	SINE|MIR|MIR	+	chr11	118631975	118658025	PHLDB1|ENST00000534140.2	+	118631975,118632158,118634922,118635392,118638890,118639161,118643799,118644071,118645355,118645734,118647929,118650076,118650444,118655604,118656682	118632053,118632296,118635051,118635548,118639001,118639251,118643940,118644174,118645650,118645825,118648076,118650193,118650547,118655690,118658025	0.588235
subcutaneous_adipose_tissue_female_adult_51_years	chr1	242001514	242001525	242001524	-	High_confidence	5	5	20	1.646811	3.784184	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	242001590	STRG.9355.1	-	241995489,241998513,241998775,241998950,242001308	241996385,241998620,241998831,241999026,242001590	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr3	129586596	129586603	129586602	-	High_confidence	5	6	13	1.070427	2.565448	chr3	129586391	129586559	LINE|L2|L2c	-	chr3	129583630	129586685	PLXND1|ENST00000505665.5	-	129583630,129584124,129585951,129586171,129586587	129583669,129584233,129586081,129586272,129586685	0.615385
subcutaneous_adipose_tissue_female_adult_51_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	14	14	16	1.317449	3.640224	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.625000
subcutaneous_adipose_tissue_female_adult_51_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	10	10	10	0.823405	3.121928	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr20	44696111	44696112	44696111	-	High_confidence	34	36	41	3.375962	4.487468	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.878049
subcutaneous_adipose_tissue_female_adult_51_years	chr5	142875135	142875151	142875150	+	High_confidence	2	2	9	0.741065	3.000000	chr5	142875200	142875313	SINE|MIR|MIR3	+	chr5	142874892	142919443	ARHGAP26|ENST00000475287.2	+	142874892,142879373,142885297,142894237,142901934,142903539,142907703,142913198,142919210	142875171,142879445,142885399,142894348,142902039,142903669,142907804,142913293,142919443	0.888889
subcutaneous_adipose_tissue_female_adult_51_years	chr1	20685251	20685307	20685306	-	High_confidence	7	7	20	1.646811	3.921928	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.650000
subcutaneous_adipose_tissue_female_adult_51_years	chr3	179740089	179740130	179740089	+	RAMPAGE_only	5	5	17	1.399789	3.500000	chr3	179740114	179740200	SINE|MIR|MIRc	+	chr3	179721563	179761151	USP13|ENST00000497155.1	+	179721563,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179761111	179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179761151	0.764706
subcutaneous_adipose_tissue_female_adult_51_years	chr12	50473533	50473534	50473533	+	RAMPAGE_only	7	8	8	0.658724	3.000000	chr12	50473583	50473802	SINE|Alu|AluSx	+	chr12	50466492	50479996	STRG.80095.13	+	50466492,50473998,50475525	50467120,50474167,50479996	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr11	58578102	58578168	58578132	-	High_confidence	10	14	46	3.787665	4.354552	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.739130
subcutaneous_adipose_tissue_female_adult_51_years	chr2	159428313	159428357	159428356	-	RAMPAGE_only	11	13	28	2.305535	4.286790	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.714286
subcutaneous_adipose_tissue_female_adult_51_years	chr3	64550871	64550928	64550871	-	RAMPAGE_only	2	2	14	1.152768	3.546594	chr3	64550650	64550841	SINE|MIR|MIR3	-	chr3	64550148	64686610	ADAMTS9|ENST00000482490.5	-	64550148,64561577,64568367,64594257,64596829,64601943,64603921,64604226,64606959,64613344,64615320,64615959,64621113,64622197,64622419,64631454,64631807,64633471,64633697,64641847,64647939,64649636,64651016,64654352,64654571,64655575,64655791,64658501,64681200,64686567	64551062,64561751,64568535,64594434,64596991,64602213,64604089,64604331,64607079,64613509,64615485,64616170,64621240,64622327,64622586,64631550,64631925,64633608,64633879,64641993,64648044,64649778,64651163,64654458,64654612,64655691,64655875,64658791,64681363,64686610	0.571429
subcutaneous_adipose_tissue_female_adult_51_years	chr19	58306110	58306128	58306127	+	High_confidence	2	2	8	0.658724	2.807355	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305387	58315202	STRG.106332.3	+	58305387,58306090,58312165,58314747	58305445,58306216,58312462,58315202	0.750000
subcutaneous_adipose_tissue_female_adult_51_years	chr3	52615423	52615444	52615423	-	High_confidence	6	6	14	1.152768	3.664498	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.714286
subcutaneous_adipose_tissue_female_adult_51_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	11	11	11	0.905746	3.027169	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr16	2757786	2757815	2757810	+	High_confidence	7	7	18	1.482130	3.969816	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.944444
subcutaneous_adipose_tissue_female_adult_51_years	chr2	36513647	36513757	36513756	+	High_confidence	12	15	81	6.669584	4.808058	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.802469
subcutaneous_adipose_tissue_female_adult_51_years	chr11	65433986	65434071	65433986	+	RAMPAGE_only	5	6	47	3.870005	4.371405	chr11	65433870	65434194	LINE|L1|L1ME3F	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	86703102	86703115	86703102	+	RAMPAGE_only	4	4	12	0.988086	2.732159	chr1	86702882	86703173	SINE|Alu|AluSz	+	chr1	86704569	86748184	SH3GLB1|NM_016009.4	+	86704569,86715723,86719506,86722539,86724312,86734601,86735078,86742207,86743127	86704971,86715865,86719635,86722673,86724405,86734691,86735179,86742436,86748184	0.916667
subcutaneous_adipose_tissue_female_adult_51_years	chr19	20423678	20423704	20423703	-	RAMPAGE_only	7	9	19	1.564470	3.836592	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.842105
subcutaneous_adipose_tissue_female_adult_51_years	chrX	5726116	5726325	5726324	-	High_confidence	101	107	258	21.243859	6.195896	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.705426
subcutaneous_adipose_tissue_female_adult_51_years	chr2	120544106	120544125	120544124	+	High_confidence	28	29	64	5.269795	4.368214	chr2	120543487	120544523	DNA|hAT-Tip100|MER45B	-	chr2	120544077	120544564	STRG.14626.1	+	120544077	120544564	0.828125
subcutaneous_adipose_tissue_female_adult_51_years	chr8	11795578	11795579	11795578	+	High_confidence	18	18	20	1.646811	4.142664	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287744.1	+	11795572,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.950000
subcutaneous_adipose_tissue_female_adult_51_years	chr1	158097954	158097955	158097954	+	RAMPAGE_only	12	12	14	1.152768	3.182006	chr1	158097988	158098249	DNA|TcMar-Tigger|Tigger19b	+	chr1	158086679	158100262	KIRREL1|ENST00000368172.1	+	158086679,158087754,158088005,158088326,158089453,158089717,158091357,158093338,158093622,158094312,158094643	158086746,158087860,158088154,158088454,158089628,158089818,158091556,158093446,158093762,158094390,158100262	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr17	82081601	82081646	82081606	-	RAMPAGE_only	41	42	166	13.668530	5.731393	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	0.987952
subcutaneous_adipose_tissue_female_adult_51_years	chr20	35152990	35152991	35152990	+	High_confidence	9	11	11	0.905746	2.845351	chr20	35152901	35155074	Retroposon|SVA|SVA_F	+	chr20	35153138	35177362	STRG.107646.1	+	35153138,35170925,35172088,35174701,35176167,35176697	35153567,35171219,35172224,35174953,35176446,35177362	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	53251611	53251618	53251617	+	High_confidence	5	6	11	0.905746	3.095795	chr12	53251547	53251701	SINE|MIR|MIRc	-	chr12	53251585	53254405	MFSD5|ENST00000534842.1	+	53251585,53252817	53252035,53254405	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr9	128921921	128921947	128921946	+	High_confidence	3	3	8	0.658724	2.521641	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921940	128941996	STRG.66347.1	+	128921940,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368,128940598,128941444,128941667	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940497,128940715,128941571,128941996	0.875000
subcutaneous_adipose_tissue_female_adult_51_years	chr6	130978732	130978739	130978738	-	High_confidence	12	12	23	1.893832	4.175736	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.695652
subcutaneous_adipose_tissue_female_adult_51_years	chr12	2798762	2798808	2798793	+	High_confidence	7	8	35	2.881919	4.418201	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.600000
subcutaneous_adipose_tissue_female_adult_51_years	chr6	31587009	31587021	31587009	+	High_confidence	2	4	7	0.576384	2.521641	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr12	109252844	109252904	109252874	+	RAMPAGE_only	3	3	20	1.646811	3.826875	chr12	109252772	109252943	DNA|hAT-Charlie|MER5B	-	chr12	109232668	109266555	ACACB|ENST00000538526.5	+	109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064,109260479,109262356,109264231,109265109,109265388,109266235	109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260149,109260657,109262469,109264386,109265280,109265525,109266555	0.700000
subcutaneous_adipose_tissue_female_adult_51_years	chr2	231072232	231072255	231072254	+	RAMPAGE_only	5	5	13	1.070427	3.026987	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr7	74723897	74723920	74723913	+	RAMPAGE_only	3	3	12	0.988086	3.095795	chr7	74723901	74724035	LINE|L2|L2c	-	chr7	74732536	74744941	GTF2I|ENST00000620631.4	+	74732536,74733922,74735460,74736499,74738044,74743448,74744138,74744757	74732662,74733981,74735532,74736683,74738103,74743520,74744250,74744941	0.666667
subcutaneous_adipose_tissue_female_adult_51_years	chr10	133369966	133370029	133370028	-	RAMPAGE_only	5	5	39	3.211281	4.662015	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.974359
subcutaneous_adipose_tissue_female_adult_51_years	chr7	99410146	99410147	99410146	+	High_confidence	6	6	9	0.741065	3.169925	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.777778
subcutaneous_adipose_tissue_female_adult_51_years	chr22	37755617	37755658	37755657	+	RAMPAGE_only	8	8	16	1.317449	3.500000	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	0.812500
subcutaneous_adipose_tissue_female_adult_51_years	chr19	57560347	57560358	57560357	-	High_confidence	5	5	10	0.823405	2.947703	chr19	57560032	57560365	LTR|ERVL|MER88	+	chr19	57541835	57559863	ZNF550|NM_001277091.1	-	57541835,57544236,57546456,57552626,57556230,57559655	57543243,57544583,57547993,57552722,57556357,57559863	0.900000
subcutaneous_adipose_tissue_female_adult_51_years	chr2	102177081	102177221	102177081	+	RAMPAGE_only	12	13	85	6.998946	5.381343	chr2	102176983	102177271	SINE|Alu|AluSx	+	chr2	102153940	102179874	IL1R1|NM_001320985.1	+	102153940,102157718,102164773,102165114,102168597,102171800,102172686,102174586,102175477,102176352	102154017,102157785,102165008,102165304,102168663,102171918,102172838,102174730,102175645,102179874	1.000000
subcutaneous_adipose_tissue_female_adult_51_years	chr14	77736978	77737045	77736978	-	High_confidence	6	8	25	2.058513	4.251629	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.920000
subcutaneous_adipose_tissue_female_adult_51_years	chr8	80485592	80485617	80485592	+	High_confidence	3	4	11	0.905746	3.321928	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.636364
subcutaneous_adipose_tissue_female_adult_51_years	chr20	50267467	50267500	50267477	+	High_confidence	23	24	65	5.352135	5.329759	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.953846
subcutaneous_adipose_tissue_female_adult_51_years	chr17	42403442	42404428	42403692	-	RAMPAGE_only	76	77	1171	96.420772	8.164231	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	0.997438
subcutaneous_adipose_tissue_female_adult_53_years	chr12	88419264	88419296	88419278	-	High_confidence	17	21	51	3.459046	5.053661	chr12	88418975	88419670	LINE|L2|L2a	+	chr12	88382393	88419296	STRG.64384.1	-	88382393,88419049	88382574,88419296	0.588235
subcutaneous_adipose_tissue_female_adult_53_years	chr4	184855551	184855555	184855551	-	High_confidence	3	3	7	0.474771	2.521641	chr4	184855538	184855766	LTR|ERVL-MaLR|MLT1J1	-	chr4	184843295	184855652	MIR3945HG|NR_132989.1	-	184843295,184850494,184855468	184844925,184850599,184855652	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr14	91462147	91462184	91462177	-	High_confidence	2	2	11	0.746069	3.121928	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.818182
subcutaneous_adipose_tissue_female_adult_53_years	chr7	30568912	30568913	30568912	-	RAMPAGE_only	5	5	8	0.542595	2.807355	chr7	30568321	30569340	LTR|ERV1|MER4-int	+	chr7	30558095	30573088	GARS-DT|ENST00000584621.5	-	30558095,30561465,30563730,30568832,30572999	30559355,30562128,30563998,30568989,30573088	0.750000
subcutaneous_adipose_tissue_female_adult_53_years	chr9	92536601	92536602	92536601	-	High_confidence	33	35	35	2.373855	4.453189	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr22	18149858	18149869	18149868	+	High_confidence	24	26	53	3.594695	4.381468	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.924528
subcutaneous_adipose_tissue_female_adult_53_years	chr7	6590246	6590286	6590269	+	High_confidence	6	6	42	2.848626	4.802555	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.523810
subcutaneous_adipose_tissue_female_adult_53_years	chr13	99313356	99313360	99313356	+	High_confidence	4	4	10	0.678244	2.947703	chr13	99313288	99313401	LINE|L2|L2a	-	chr13	99312782	99386434	UBAC2|ENST00000460562.5	+	99312782,99314096,99318021,99340319,99367786,99385227	99313387,99314220,99318069,99340565,99367906,99386434	0.600000
subcutaneous_adipose_tissue_female_adult_53_years	chr4	102861123	102861155	102861123	+	RAMPAGE_only	9	9	37	2.509504	4.188523	chr4	102860440	102861387	LINE|L1|L1M3c	-	chr4	102868973	102887681	CISD2|ENST00000646632.1	+	102868973,102882791,102885215,102887340	102869187,102882873,102885430,102887681	0.837838
subcutaneous_adipose_tissue_female_adult_53_years	chr10	133369948	133369983	133369958	-	RAMPAGE_only	4	4	13	0.881718	3.392747	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr5	133089677	133089678	133089677	+	RAMPAGE_only	10	10	15	1.017367	3.640224	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr22	50541372	50541389	50541372	+	RAMPAGE_only	3	5	13	0.881718	3.084963	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	0.923077
subcutaneous_adipose_tissue_female_adult_53_years	chr12	93773408	93773412	93773411	+	High_confidence	72	73	127	8.613703	5.954186	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93772954	93850667	STRG.64665.6	+	93772954,93849969	93773486,93850667	0.622047
subcutaneous_adipose_tissue_female_adult_53_years	chr10	80176128	80176149	80176148	-	RAMPAGE_only	3	3	8	0.542595	2.500000	chr10	80176083	80176485	LINE|L1|L1ME4b	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr2	43486716	43486717	43486716	-	RAMPAGE_only	18	19	21	1.424313	3.784184	chr2	43486640	43486924	DNA|hAT-Charlie|MER102b	-	chr2	43344156	43463259	THADA|ENST00000485353.5	-	43344156,43397970,43428099,43430212,43463033	43344237,43398139,43428231,43430302,43463259	0.571429
subcutaneous_adipose_tissue_female_adult_53_years	chr10	3435704	3435742	3435704	-	High_confidence	8	8	26	1.763435	3.403074	chr10	3435309	3436154	LINE|L1|L1MB8	+	chr10	3432897	3435700	STRG.53223.1	-	3432897,3434806,3435673	3434362,3434978,3435700	0.961538
subcutaneous_adipose_tissue_female_adult_53_years	chr2	200888597	200888598	200888597	-	High_confidence	10	10	15	1.017367	2.638460	chr2	200888516	200888797	SINE|Alu|AluSx	-	chr2	200881420	200888579	PPIL3|ENST00000457063.1	-	200881420,200882341,200885697,200887612,200888293	200881488,200882435,200885772,200887685,200888579	0.800000
subcutaneous_adipose_tissue_female_adult_53_years	chr10	4678168	4678195	4678168	-	High_confidence	3	3	10	0.678244	2.725481	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.600000
subcutaneous_adipose_tissue_female_adult_53_years	chr7	103353924	103353957	103353956	+	High_confidence	5	5	11	0.746069	2.594907	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.727273
subcutaneous_adipose_tissue_female_adult_53_years	chr19	53865343	53865360	53865343	+	High_confidence	27	28	90	6.104199	5.036880	chr19	53865313	53865624	SINE|Alu|AluSx	-	chr19	53865366	53874094	STRG.83940.6	+	53865366,53869753,53873527	53865728,53869838,53874094	0.977778
subcutaneous_adipose_tissue_female_adult_53_years	chr1	12572732	12572758	12572757	-	RAMPAGE_only	2	2	8	0.542595	2.807355	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.875000
subcutaneous_adipose_tissue_female_adult_53_years	chr14	73463608	73463630	73463624	-	RAMPAGE_only	105	107	197	13.361414	6.191252	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73275106	73458617	NUMB|ENST00000554546.5	-	73275106,73282358,73284080,73287109,73292733,73297210,73323129,73355625,73366896,73409936,73458492	73277293,73282505,73284374,73287314,73292874,73297285,73323204,73355766,73366981,73410068,73458617	0.720812
subcutaneous_adipose_tissue_female_adult_53_years	chr4	128428000	128428006	128428000	+	High_confidence	6	6	11	0.746069	3.277613	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr1	203372992	203373067	203372992	+	High_confidence	11	19	65	4.408588	4.982509	chr1	203372836	203373024	LTR|ERVL-MaLR|MLT1J2	+	chr1	203372982	203381516	STRG.6476.1	+	203372982,203374577,203375209,203378646,203379902	203373112,203374729,203375413,203378785,203381516	0.646154
subcutaneous_adipose_tissue_female_adult_53_years	chrX	120143845	120143853	120143845	+	High_confidence	2	2	7	0.474771	2.521641	chrX	120143635	120144308	LTR|ERV1|HERVIP10FH-int	+	chrX	120143517	120146792	STRG.91903.1	+	120143517,120145637	120143900,120146792	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr1	43250390	43250391	43250390	-	High_confidence	4	4	7	0.474771	2.584963	chr1	43249744	43250419	LTR|ERV1|LOR1-int	-	chr1	43194683	43250391	EBNA1BP2|ENST00000474566.1	-	43194683,43206345,43211449,43215265,43250218	43194949,43206392,43211567,43215393,43250391	0.571429
subcutaneous_adipose_tissue_female_adult_53_years	chr5	150125450	150125474	150125450	-	RAMPAGE_only	12	12	22	1.492138	3.821928	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.818182
subcutaneous_adipose_tissue_female_adult_53_years	chr10	118790195	118790196	118790195	-	High_confidence	9	10	13	0.881718	3.418296	chr10	118788028	118790917	LINE|L1|L1PB2	+	chr10	118784488	118790190	STRG.56626.1	-	118784488,118786764	118784682,118790190	0.923077
subcutaneous_adipose_tissue_female_adult_53_years	chr3	186856910	186857124	186857123	+	RAMPAGE_only	12	12	210	14.243131	6.013681	chr3	186856773	186857269	LTR|ERVL-MaLR|MLT1K	-	chr3	186842703	186858463	ADIPOQ|ENST00000444204.2	+	186842703,186845556,186853050,186854183	186842749,186845607,186853272,186858463	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr15	90467511	90467514	90467511	+	RAMPAGE_only	2	3	7	0.474771	2.584963	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90388260	90500371	IQGAP1|ENST00000560738.1	+	90388260,90390773,90466046,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390824,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500371	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr6	143905098	143905120	143905111	+	RAMPAGE_only	8	8	29	1.966909	2.571521	chr6	143904587	143906427	LINE|L1|L1M4c	-	chr6	143937586	143964176	STRG.38458.2	+	143937586,143938141,143962942,143963936	143937733,143938268,143963093,143964176	0.931034
subcutaneous_adipose_tissue_female_adult_53_years	chr14	102083125	102083142	102083125	-	RAMPAGE_only	3	3	14	0.949542	3.182006	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr17	59729702	59729725	59729704	+	High_confidence	2	3	11	0.746069	3.121928	chr17	59729673	59729983	SINE|Alu|AluSq2	-	chr17	59729714	59737517	VMP1|ENST00000587259.5	+	59729714,59731420,59735337,59737452	59730017,59731522,59735473,59737517	0.818182
subcutaneous_adipose_tissue_female_adult_53_years	chr1	46804295	46804355	46804345	+	RAMPAGE_only	11	11	32	2.170382	4.140320	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr6	85684396	85684426	85684400	+	High_confidence	8	8	42	2.848626	4.850534	chr6	85684245	85684930	LINE|L2|L2	-	chr6	85684428	85685555	STRG.36179.1	+	85684428	85685555	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr11	60282699	60282700	60282699	+	RAMPAGE_only	7	7	9	0.610420	2.750000	chr11	60282605	60283032	LINE|L2|L2	-	chr11	60280655	60308968	MS4A4A|ENST00000343968.8	+	60280655,60282593,60292224,60297196,60301000,60302558,60306099,60308106	60280716,60282739,60292384,60297325,60301057,60302717,60306201,60308968	0.888889
subcutaneous_adipose_tissue_female_adult_53_years	chr3	169812903	169812904	169812903	-	High_confidence	7	8	11	0.746069	2.663533	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr10	133370017	133370029	133370017	-	RAMPAGE_only	2	3	7	0.474771	2.807355	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr9	84368670	84368718	84368670	-	High_confidence	10	10	90	6.104199	5.770622	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.800000
subcutaneous_adipose_tissue_female_adult_53_years	chr11	123071497	123071559	123071551	-	RAMPAGE_only	12	12	46	3.119924	4.512055	chr11	123071468	123071735	SINE|Alu|AluSx1	+	chr11	123069864	123195281	CLMP|ENST00000448775.3	-	123069864,123074701,123083084,123083679,123084511,123097794,123194912	123073774,123074843,123083207,123083847,123084713,123097952,123195281	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr15	30624445	30624477	30624476	+	High_confidence	3	3	11	0.746069	2.921928	chr15	30624495	30624669	LINE|CR1|L3	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.636364
subcutaneous_adipose_tissue_female_adult_53_years	chr8	47270644	47270648	47270647	+	RAMPAGE_only	8	8	22	1.492138	3.606937	chr8	47269593	47271030	LINE|L1|L1MB7	-	chr8	47269358	47595984	STRG.46028.10	+	47269358,47279861,47284027,47291032,47293866,47396375,47407860,47440322,47595810	47270718,47280017,47284094,47291137,47294030,47396626,47407961,47440542,47595984	0.954545
subcutaneous_adipose_tissue_female_adult_53_years	chr12	92454354	92454355	92454354	-	RAMPAGE_only	7	7	10	0.678244	2.947703	chr12	92454286	92454485	SINE|MIR|MIRb	-	chr12	92420093	92428148	CLLU1OS|NM_001025232.1	-	92420093,92420998,92422546,92428094	92420460,92421173,92422636,92428148	0.800000
subcutaneous_adipose_tissue_female_adult_53_years	chr14	50932266	50932282	50932266	-	RAMPAGE_only	5	5	16	1.085191	3.189898	chr14	50932253	50932483	LTR|ERVL-MaLR|MLT1L	+	chr14	50857890	50944456	PYGL|ENST00000532462.5	-	50857890,50908270,50908820,50909894,50911729,50911977,50912155,50913028,50914700,50915335,50915824,50916641,50916961,50920540,50920955,50923968,50931672,50935106,50937735,50944160	50858169,50908337,50908955,50910102,50911871,50912036,50912303,50913130,50914815,50915499,50915971,50916734,50917105,50920623,50921067,50924100,50931776,50935185,50937837,50944456	0.875000
subcutaneous_adipose_tissue_female_adult_53_years	chr3	151539221	151539292	151539287	-	RAMPAGE_only	3	3	21	1.424313	3.892407	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151436540	151481589	STRG.20895.1	-	151436540,151442983,151444918,151453383,151457025,151458515,151460260,151460945	151438597,151443884,151449265,151453774,151457155,151458710,151460347,151481589	0.571429
subcutaneous_adipose_tissue_female_adult_53_years	chr11	65434445	65434623	65434588	+	RAMPAGE_only	16	16	139	9.427596	5.806018	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.956835
subcutaneous_adipose_tissue_female_adult_53_years	chr11	114318638	114318642	114318638	+	High_confidence	6	6	10	0.678244	2.503258	chr11	114318663	114318966	SINE|Alu|AluSz	+	chr11	114318258	114319032	STRG.60544.1	+	114318258	114319032	0.800000
subcutaneous_adipose_tissue_female_adult_53_years	chr19	11223351	11223352	11223351	-	RAMPAGE_only	24	24	29	1.966909	4.418157	chr19	11223304	11223458	LTR|ERVL-MaLR|MLT1J2	+	chr19	11199294	11235754	STRG.81888.3	-	11199294,11200307,11200715,11200908,11201888,11202393,11202583,11204080,11204199,11208685,11208910,11211775,11211992,11213175,11214274,11214552,11215386,11215800,11216913,11217230,11221850,11222108,11222734,11222992,11227336,11228939,11229297,11232184,11233202,11235597	11199539,11200469,11200822,11201052,11202125,11202483,11202709,11204095,11204331,11208829,11209103,11211876,11212151,11213328,11214409,11214649,11215471,11215927,11217096,11217391,11222020,11222248,11222905,11223122,11227477,11229035,11229390,11232289,11233366,11235754	0.896552
subcutaneous_adipose_tissue_female_adult_53_years	chr3	53168745	53168746	53168745	+	RAMPAGE_only	7	7	10	0.678244	2.947703	chr3	53168641	53169049	LINE|L2|L2b	-	chr3	53165128	53184973	PRKCD|ENST00000464818.1	+	53165128,53178403,53179576,53181206,53181443,53181700,53184873	53165215,53178537,53179776,53181267,53181606,53181732,53184973	0.600000
subcutaneous_adipose_tissue_female_adult_53_years	chr3	14047155	14047156	14047155	-	High_confidence	17	17	18	1.220840	3.852169	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14038574	14047210	STRG.16782.1	-	14038574,14046812	14041628,14047210	0.777778
subcutaneous_adipose_tissue_female_adult_53_years	chr9	20658312	20658349	20658348	+	High_confidence	12	19	57	3.865993	4.750977	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658338	20912908	STRG.49542.4	+	20658338,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912908	0.771930
subcutaneous_adipose_tissue_female_adult_53_years	chr22	50757212	50757261	50757247	+	High_confidence	14	14	44	2.984275	4.784180	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.818182
subcutaneous_adipose_tissue_female_adult_53_years	chr10	118322341	118322382	118322378	-	RAMPAGE_only	45	46	137	9.291947	5.402238	chr10	118322113	118322801	LINE|L1|L1MC4	+	chr10	118310635	118326349	FAM204A|ENST00000491416.5	-	118310635,118311206,118326153	118310908,118311313,118326349	0.744526
subcutaneous_adipose_tissue_female_adult_53_years	chr1	40042747	40042770	40042747	+	RAMPAGE_only	9	9	28	1.899084	3.838040	chr1	40042259	40043053	LINE|L2|L2c	-	chr1	40040779	40066295	CAP1|ENST00000424977.1	+	40040779,40041428,40059336,40060066,40061734,40064226,40064473,40066214	40040801,40041493,40059458,40060170,40061812,40064370,40064559,40066295	0.785714
subcutaneous_adipose_tissue_female_adult_53_years	chr19	5680234	5680261	5680240	-	High_confidence	3	3	13	0.881718	3.418296	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.923077
subcutaneous_adipose_tissue_female_adult_53_years	chr1	166850222	166850235	166850222	+	RAMPAGE_only	5	5	11	0.746069	3.277613	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr15	93863018	93863066	93863065	+	High_confidence	28	28	101	6.850268	5.934918	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863032	93867715	STRG.74193.3	+	93863032,93865373	93863216,93867715	0.762376
subcutaneous_adipose_tissue_female_adult_53_years	chr20	18794077	18794086	18794085	+	High_confidence	27	27	60	4.069466	4.092550	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.983333
subcutaneous_adipose_tissue_female_adult_53_years	chr2	9554953	9554966	9554953	-	High_confidence	6	6	18	1.220840	3.852169	chr2	9554869	9555063	DNA|hAT-Tip100?|MamRep1879	-	chr2	9488636	9554729	ADAM17|ENST00000648548.1	-	9488636,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152,9551474,9554708	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526264,9527954,9535922,9536828,9543285,9551757,9554729	0.777778
subcutaneous_adipose_tissue_female_adult_53_years	chr2	43459520	43459529	43459528	-	RAMPAGE_only	6	6	10	0.678244	2.725481	chr2	43459407	43459565	LINE|L2|L2a	-	chr2	43344156	43463259	THADA|ENST00000485353.5	-	43344156,43397970,43428099,43430212,43463033	43344237,43398139,43428231,43430302,43463259	0.600000
subcutaneous_adipose_tissue_female_adult_53_years	chr8	102925026	102925046	102925045	+	RAMPAGE_only	5	5	11	0.746069	2.721928	chr8	102925075	102925163	DNA|hAT-Charlie|MER5B	+	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.545455
subcutaneous_adipose_tissue_female_adult_53_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	10	10	10	0.678244	2.646439	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr21	28090339	28090410	28090339	+	High_confidence	58	67	246	16.684811	4.800715	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.967480
subcutaneous_adipose_tissue_female_adult_53_years	chr2	227534913	227534933	227534932	+	RAMPAGE_only	9	9	17	1.153015	3.875000	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.823529
subcutaneous_adipose_tissue_female_adult_53_years	chr11	65440697	65440844	65440781	+	RAMPAGE_only	27	28	271	18.380422	5.748325	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.981550
subcutaneous_adipose_tissue_female_adult_53_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	15	15	15	1.017367	3.773557	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr6	166957411	166957439	166957430	-	High_confidence	8	8	22	1.492138	4.201841	chr6	166957416	166957859	LINE|L2|L2a	+	chr6	166929539	166957184	RNASET2|ENST00000476238.6	-	166929539,166931043,166934090,166938894,166943018,166946681,166948569,166952487,166956096,166957125	166929791,166931118,166934136,166939008,166943089,166946739,166948625,166952548,166956191,166957184	0.909091
subcutaneous_adipose_tissue_female_adult_53_years	chr12	111873	111884	111875	-	High_confidence	16	23	54	3.662519	4.716954	chr12	110820	111833	LTR|ERV1|HERVP71A-int	-	chr12	106523	111850	AC026369.3|ENST00000540226.1	-	106523,111618	106877,111850	0.907407
subcutaneous_adipose_tissue_female_adult_53_years	chrX	11351636	11351676	11351675	-	RAMPAGE_only	118	118	230	15.599620	6.609162	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11137543	11354203	STRG.89496.4	-	11137543,11142232,11143979,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11351385	11139530,11142313,11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11354203	0.543478
subcutaneous_adipose_tissue_female_adult_53_years	chrX	119552613	119552625	119552613	-	RAMPAGE_only	6	6	11	0.746069	3.277613	chrX	119552336	119552767	LTR|ERVL|MER21A	-	chrX	119539569	119542767	CXorf56|ENST00000469448.1	-	119539569,119541327,119542504	119539789,119541420,119542767	0.545455
subcutaneous_adipose_tissue_female_adult_53_years	chr17	79030185	79030217	79030197	+	RAMPAGE_only	4	6	17	1.153015	3.625000	chr17	79030152	79030319	LINE|L1|L1ME4a	-	chr17	79034184	79048247	C1QTNF1|ENST00000581774.5	+	79034184,79043954,79046554,79047537	79034533,79044123,79046694,79048247	0.882353
subcutaneous_adipose_tissue_female_adult_53_years	chr1	12409836	12409855	12409854	+	RAMPAGE_only	3	3	6	0.406947	2.584963	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	12635948	12635951	12635950	+	RAMPAGE_only	4	6	8	0.542595	2.807355	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	0.875000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	32601297	32601312	32601311	+	RAMPAGE_only	3	3	7	0.474771	2.521641	chr12	32601190	32601318	SINE|MIR|MIRb	-	chr12	32582378	32644751	FGD4|ENST00000494977.1	+	32582378,32598496,32600409,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624658,32624975,32625653,32633548,32637649,32638654,32640275,32642760,32644593	32582467,32598586,32600509,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32624751,32625068,32625779,32633689,32637855,32638795,32640453,32642842,32644751	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr16	21756960	21756966	21756965	+	High_confidence	5	6	9	0.610420	2.500000	chr16	21756601	21757033	DNA|hAT-Charlie|MER113	+	chr16	21756747	21760814	STRG.75366.1	+	21756747,21760469	21757277,21760814	0.888889
subcutaneous_adipose_tissue_female_adult_53_years	chr21	29077486	29077511	29077486	+	High_confidence	8	8	24	1.627786	4.262692	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.750000
subcutaneous_adipose_tissue_female_adult_53_years	chr5	122621090	122621118	122621090	+	High_confidence	7	7	21	1.424313	3.784184	chr5	122621054	122621204	LTR|ERV1|HERVH-int	-	chr5	122621350	122621626	STRG.31293.1	+	122621350	122621626	0.523810
subcutaneous_adipose_tissue_female_adult_53_years	chr10	17216310	17216311	17216310	-	RAMPAGE_only	18	18	20	1.356489	3.787144	chr10	17216274	17216354	LTR|ERV1|HERVIP10FH-int	+	chr10	17214238	17226898	VIM-AS1|ENST00000437232.5	-	17214238,17216166,17217601,17226855	17215364,17216274,17217675,17226898	0.900000
subcutaneous_adipose_tissue_female_adult_53_years	chr17	47067498	47067534	47067498	-	High_confidence	97	105	463	31.402713	6.020560	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.941685
subcutaneous_adipose_tissue_female_adult_53_years	chr11	123061128	123061257	123061256	-	High_confidence	38	39	132	8.952825	5.503384	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.977273
subcutaneous_adipose_tissue_female_adult_53_years	chr8	99892036	99892057	99892056	-	RAMPAGE_only	107	107	182	12.344047	4.893827	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.983516
subcutaneous_adipose_tissue_female_adult_53_years	chr19	9709659	9709660	9709659	+	High_confidence	26	26	31	2.102557	4.257111	chr19	9709309	9709779	LTR|ERV1|LTR10A	+	chr19	9709675	9722087	STRG.81785.1	+	9709675,9719542	9709992,9722087	0.935484
subcutaneous_adipose_tissue_female_adult_53_years	chr11	94449577	94449578	94449577	-	RAMPAGE_only	4	5	6	0.406947	2.584963	chr11	94449371	94449602	DNA|TcMar-Tigger|Tigger17a	+	chr11	94445738	94447300	MRE11|ENST00000535120.1	-	94445738,94447218	94445890,94447300	0.666667
subcutaneous_adipose_tissue_female_adult_53_years	chr21	28776826	28776828	28776826	-	RAMPAGE_only	7	12	18	1.220840	4.058814	chr21	28776487	28777037	LTR|ERVL|MLT2A2	-	chr21	28439345	28805144	STRG.87121.7	-	28439345,28577218,28626584,28771993,28803936	28446472,28577380,28626676,28772138,28805144	0.555556
subcutaneous_adipose_tissue_female_adult_53_years	chr3	138601911	138601912	138601911	+	RAMPAGE_only	49	49	49	3.323397	5.005030	chr3	138601717	138602070	LTR|ERVL-MaLR|THE1A	+	chr3	138608605	138631139	FAIM|ENST00000470889.5	+	138608605,138610603,138621406,138622187,138629106	138608937,138611037,138621539,138622416,138631139	0.551020
subcutaneous_adipose_tissue_female_adult_53_years	chr13	49551076	49551093	49551076	-	RAMPAGE_only	2	2	10	0.678244	2.921928	chr13	49550817	49551102	SINE|Alu|AluSz6	+	chr13	49531945	49567323	RCBTB1|ENST00000258646.3	-	49531945,49540875,49541675,49544736,49549457,49551325,49552177,49555514,49559917,49566617,49567153	49534262,49541006,49541827,49544863,49549648,49551468,49552285,49555673,49560084,49566768,49567323	0.700000
subcutaneous_adipose_tissue_female_adult_53_years	chr7	139719008	139719025	139719024	-	RAMPAGE_only	8	8	18	1.220840	3.947703	chr7	139718933	139719132	LINE|L2|L2	+	chr7	139583523	139717013	HIPK2|ENST00000342645.7	-	139583523,139600434,139604080,139613201,139614285,139620400,139626600,139628952,139631164,139631601,139715931	139584064,139600596,139604223,139613323,139614493,139620563,139626785,139629039,139631284,139631725,139717013	0.777778
subcutaneous_adipose_tissue_female_adult_53_years	chr20	36890511	36890711	36890526	-	RAMPAGE_only	65	117	613	41.576378	5.635818	chr20	36890464	36890776	SINE|Alu|AluSq2	-	chr20	36890268	36951707	SAMHD1|ENST00000646904.1	-	36890268,36897821,36898439,36904156,36905363,36911217,36912460,36916721,36916948,36917151,36919363,36927181,36930759,36935028,36941038,36946737,36951435	36893066,36897959,36898544,36904249,36905503,36911333,36912552,36916830,36917049,36917215,36919519,36927252,36930875,36935189,36941111,36946804,36951707	0.985318
subcutaneous_adipose_tissue_female_adult_53_years	chr17	13931149	13931183	13931149	-	RAMPAGE_only	5	5	21	1.424313	3.821928	chr17	13931030	13931624	LTR|ERVL-MaLR|MLT1L	+	chr17	13776831	13892839	COX10-AS1|ENST00000577798.6	-	13776831,13790268,13865078,13880301,13892724	13777349,13790313,13865266,13880371,13892839	0.666667
subcutaneous_adipose_tissue_female_adult_53_years	chr5	157113136	157113205	157113204	-	High_confidence	6	10	27	1.831260	4.356558	chr5	157112815	157113303	LINE|L1|L1MC5a	-	chr5	157085831	157113182	STRG.32755.1	-	157085831,157088940,157095305,157098857,157104665,157106626,157108925,157113095	157087294,157088977,157095459,157098901,157104749,157106962,157108987,157113182	0.740741
subcutaneous_adipose_tissue_female_adult_53_years	chr3	196060526	196060540	196060539	-	High_confidence	4	5	9	0.610420	3.000000	chr3	196060516	196060826	SINE|Alu|AluY	+	chr3	196055110	196060604	TFRC|ENST00000483983.5	-	196055110,196058283,196058573,196060179	196055301,196058365,196058632,196060604	0.777778
subcutaneous_adipose_tissue_female_adult_53_years	chr7	102822456	102822459	102822458	-	RAMPAGE_only	12	16	20	1.356489	3.721612	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.650000
subcutaneous_adipose_tissue_female_adult_53_years	chr10	110496244	110496268	110496267	-	High_confidence	3	3	10	0.678244	2.947703	chr10	110496171	110496447	LINE|L2|L2b	+	chr10	110475103	110496204	AL355512.1|ENST00000607952.1	-	110475103,110496118	110475226,110496204	0.700000
subcutaneous_adipose_tissue_female_adult_53_years	chr14	81192669	81192719	81192669	-	RAMPAGE_only	8	9	36	2.441680	4.477025	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.916667
subcutaneous_adipose_tissue_female_adult_53_years	chr9	121340583	121340626	121340625	-	RAMPAGE_only	9	9	37	2.509504	4.871178	chr9	121340456	121340767	SINE|Alu|AluSq2	+	chr9	121339076	121370205	STOM|ENST00000286713.6	-	121339076,121348014,121349119,121353219,121354600,121356052,121370126	121341408,121348149,121349323,121353302,121354673,121356156,121370205	0.972973
subcutaneous_adipose_tissue_female_adult_53_years	chr4	39472423	39472424	39472423	-	RAMPAGE_only	6	6	6	0.406947	2.584963	chr4	39472147	39472408	DNA|TcMar-Tigger|Tigger2	-	chr4	39452520	39458949	RPL9|ENST00000645496.1	-	39452520,39454532,39454863,39456405,39457585,39458193,39458393,39458890	39454225,39454649,39454944,39456538,39457681,39458309,39458440,39458949	0.833333
subcutaneous_adipose_tissue_female_adult_53_years	chr12	24909664	24909702	24909664	-	RAMPAGE_only	8	8	38	2.577329	4.228742	chr12	24909448	24909699	LTR|ERVL-MaLR|MLT1C	-	chr12	24810023	24903075	BCAT1|NM_001178093.1	-	24810023,24829822,24832722,24836510,24842081,24849785,24878529,24881300,24894274,24901813,24902946	24818049,24829897,24832863,24836596,24842224,24849949,24878649,24881411,24894475,24901885,24903075	0.973684
subcutaneous_adipose_tissue_female_adult_53_years	chr11	21912411	21912416	21912415	+	High_confidence	4	5	11	0.746069	2.845351	chr11	21912260	21912515	LTR|ERVL-MaLR|MLT1J	+	chr11	21912382	22283357	STRG.57837.2	+	21912382,21982965,22079540,22203803,22211263,22221096,22225983,22227301,22236162,22239568,22250236,22250740,22250950,22255370,22257679,22259518,22262128,22262945,22270311,22272783,22274568,22276093,22279543	21912656,21983078,22079702,22203850,22211314,22221210,22226052,22227586,22236276,22239684,22250371,22250846,22251011,22255522,22257754,22259741,22262298,22263043,22270442,22272989,22274747,22276199,22283357	0.636364
subcutaneous_adipose_tissue_female_adult_53_years	chr10	93431455	93431497	93431496	-	RAMPAGE_only	3	4	18	1.220840	3.852169	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.833333
subcutaneous_adipose_tissue_female_adult_53_years	chr11	65431125	65431166	65431125	+	RAMPAGE_only	2	2	14	0.949542	3.521641	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr3	139344547	139344548	139344547	+	High_confidence	20	20	27	1.831260	4.315824	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.888889
subcutaneous_adipose_tissue_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	102	102	102	6.918092	4.117809	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.980392
subcutaneous_adipose_tissue_female_adult_53_years	chr2	9422671	9422745	9422744	-	High_confidence	3	3	19	1.288664	3.932138	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NR_134951.1	-	9405680,9407448,9408112,9412268,9414177,9419989,9422478	9406905,9407598,9408205,9412405,9414256,9420100,9422660	0.894737
subcutaneous_adipose_tissue_female_adult_53_years	chr2	206161418	206161467	206161465	+	High_confidence	3	7	15	1.017367	3.235926	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	0.933333
subcutaneous_adipose_tissue_female_adult_53_years	chr12	53464763	53464775	53464774	+	RAMPAGE_only	4	6	9	0.610420	2.947703	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.555556
subcutaneous_adipose_tissue_female_adult_53_years	chr1	111290845	111290867	111290851	+	High_confidence	4	4	15	1.017367	3.235926	chr1	111290559	111291160	LTR|ERVL|LTR66	+	chr1	111290851	111320566	CHIA|NM_001258004.1	+	111290851,111310399,111311688,111314539,111315269,111315733,111317680,111317985,111318492,111319119,111319326,111320212	111290950,111310492,111311718,111314596,111315435,111315872,111317805,111318109,111318678,111319239,111319468,111320566	0.933333
subcutaneous_adipose_tissue_female_adult_53_years	chr10	118322596	118322651	118322596	-	RAMPAGE_only	3	3	16	1.085191	3.452820	chr10	118322113	118322801	LINE|L1|L1MC4	+	chr10	118310635	118326349	FAM204A|ENST00000491416.5	-	118310635,118311206,118326153	118310908,118311313,118326349	0.687500
subcutaneous_adipose_tissue_female_adult_53_years	chr19	51795150	51795187	51795150	+	High_confidence	19	19	106	7.189390	5.328895	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795145	51826190	FPR3|NM_002030.4	+	51795145,51823738	51795331,51826190	0.952830
subcutaneous_adipose_tissue_female_adult_53_years	chr6	53431493	53431494	53431493	+	RAMPAGE_only	5	6	6	0.406947	2.584963	chr6	53431366	53431721	LTR|ERVL-MaLR|MLT1A1	+	chr6	53503184	53506919	AL033397.2|ENST00000508884.1	+	53503184,53506153,53506797	53503328,53506434,53506919	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	113334531	113334553	113334552	-	High_confidence	4	4	12	0.813893	3.418296	chr12	113334544	113334646	SINE|MIR|MIRb	+	chr12	113320849	113334613	SLC8B1|ENST00000552613.1	-	113320849,113321055,113321195,113332748,113334442	113320907,113321108,113321348,113332960,113334613	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr20	50267474	50267502	50267477	+	High_confidence	25	37	152	10.309314	5.735065	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.960526
subcutaneous_adipose_tissue_female_adult_53_years	chr8	18063185	18063207	18063197	-	High_confidence	5	5	21	1.424313	3.932138	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.904762
subcutaneous_adipose_tissue_female_adult_53_years	chr2	182030832	182030852	182030851	+	High_confidence	4	4	8	0.542595	2.807355	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.875000
subcutaneous_adipose_tissue_female_adult_53_years	chr2	127084214	127084222	127084221	-	High_confidence	8	13	21	1.424313	3.787144	chr2	127084080	127084233	DNA|hAT-Charlie|MER5A1	+	chr2	127048022	127084550	BIN1|NM_001320642.1	-	127048022,127050420,127050801,127051153,127052254,127053421,127053904,127057472,127059010,127062114,127063570,127063932,127068162,127068923,127069994,127070552,127070761,127076625,127083588	127048633,127050522,127050912,127051243,127052362,127053445,127054012,127057601,127059155,127062197,127063646,127064018,127068255,127069031,127070090,127070647,127070816,127076706,127084550	0.904762
subcutaneous_adipose_tissue_female_adult_53_years	chr19	11196126	11196132	11196126	-	High_confidence	5	5	14	0.949542	3.026987	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr4	102431237	102431260	102431247	-	High_confidence	10	13	38	2.577329	4.649115	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.868421
subcutaneous_adipose_tissue_female_adult_53_years	chr15	72376470	72376497	72376485	-	High_confidence	6	6	18	1.220840	3.572431	chr15	72376327	72376445	LINE|L2|L2c	-	chr15	72340918	72376476	HEXA|ENST00000268097.9	-	72340918,72345445,72346234,72346526,72347685,72348047,72349078,72350517,72351132,72353067,72353690,72355558,72356524,72375719	72344140,72345550,72346325,72346710,72347758,72348134,72349259,72350650,72351234,72353178,72353737,72355624,72356617,72376476	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr2	204544958	204544986	204544985	+	High_confidence	5	5	14	0.949542	3.521641	chr2	204544936	204545029	SINE|MIR|MIR3	+	chr2	204545792	205048595	PARD3B|ENST00000415947.1	+	204545792,204686180,204965151,205047580	204546171,204686282,204965323,205048595	0.571429
subcutaneous_adipose_tissue_female_adult_53_years	chr10	89888015	89888038	89888037	+	High_confidence	28	29	54	3.662519	4.975575	chr10	89888002	89888814	LTR|ERV1|LTR8B	+	chr10	89888868	89918360	STRG.55520.1	+	89888868,89914635	89889166,89918360	0.611111
subcutaneous_adipose_tissue_female_adult_53_years	chr13	109732160	109732161	109732160	-	High_confidence	38	38	48	3.255573	4.942783	chr13	109731772	109733218	LTR|ERV1|LTR12C	-	chr13	109730352	109732144	STRG.68019.1	-	109730352	109732144	0.979167
subcutaneous_adipose_tissue_female_adult_53_years	chr17	59619874	59619923	59619894	+	High_confidence	437	518	1588	107.705202	5.672751	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.948363
subcutaneous_adipose_tissue_female_adult_53_years	chr10	100291398	100291440	100291439	-	RAMPAGE_only	5	5	20	1.356489	3.826875	chr10	100291357	100291454	SINE|MIR|MIR1_Amn	+	chr10	100288395	100329940	PKD2L1|ENST00000528248.1	-	100288395,100288971,100290014,100290400,100291300,100292947,100293280,100294534,100294941,100296121,100296979,100297381,100298561,100299590,100329210,100329868	100288478,100289056,100290138,100290519,100291427,100293069,100293379,100294655,100295123,100296292,100297208,100297606,100298815,100299718,100329346,100329940	0.750000
subcutaneous_adipose_tissue_female_adult_53_years	chr5	72926306	72926307	72926306	+	High_confidence	33	33	35	2.373855	4.354852	chr5	72925316	72926709	LTR|ERV1|LTR12C	+	chr5	72926314	72932867	STRG.29593.1	+	72926314,72932839	72926749,72932867	0.685714
subcutaneous_adipose_tissue_female_adult_53_years	chr1	15781041	15781049	15781041	+	High_confidence	8	8	14	0.949542	3.235926	chr1	15781086	15781364	SINE|Alu|AluSc	+	chr1	15780964	15786589	STRG.433.4	+	15780964,15784547	15781176,15786589	0.785714
subcutaneous_adipose_tissue_female_adult_53_years	chr1	202751394	202751419	202751394	-	High_confidence	3	3	9	0.610420	3.169925	chr1	202751337	202751494	DNA|hAT-Charlie|MER5A	+	chr1	202728697	202750702	KDM5B|ENST00000649089.1	-	202728697,202730908,202731827,202733400,202735428,202736212,202740673,202741545,202742390,202742654,202745857,202746141,202748944,202750658	202730027,202731063,202731939,202733886,202735587,202736392,202740812,202741722,202742505,202742805,202745982,202746323,202749139,202750702	0.777778
subcutaneous_adipose_tissue_female_adult_53_years	chr11	117185957	117186022	117185994	+	High_confidence	18	18	73	4.951184	5.336289	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.835616
subcutaneous_adipose_tissue_female_adult_53_years	chr11	58578102	58578145	58578102	-	High_confidence	18	18	89	6.036375	5.618816	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.561798
subcutaneous_adipose_tissue_female_adult_53_years	chr7	11252993	11252997	11252993	+	High_confidence	21	21	52	3.526871	5.109000	chr7	11252764	11253207	LTR|ERVL|LTR40b	-	chr7	11252979	11520175	AC004160.1|ENST00000445839.5	+	11252979,11379286,11383796,11520051	11253225,11379369,11383908,11520175	0.788462
subcutaneous_adipose_tissue_female_adult_53_years	chr4	48012935	48012980	48012935	-	High_confidence	4	4	20	1.356489	3.721928	chr4	48012591	48013262	LTR|ERV1|MER4-int	-	chr4	47935976	48012944	CNGA1|NM_000087.3	-	47935976,47940762,47942040,47943180,47943370,47949832,47951352,47952582,47981392,48010793,48012888	47937829,47940869,47942148,47943288,47943412,47949895,47951469,47952703,47981500,48010893,48012944	0.700000
subcutaneous_adipose_tissue_female_adult_53_years	chr8	47360804	47360848	47360804	+	High_confidence	24	24	57	3.865993	5.067491	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47595984	STRG.46028.18	+	47360818,47396375,47407860,47440322,47595810	47360949,47396626,47407961,47440542,47595984	0.736842
subcutaneous_adipose_tissue_female_adult_53_years	chr15	32613831	32613863	32613862	+	High_confidence	7	7	26	1.763435	4.163856	chr15	32613860	32614055	LINE|CR1|L3	+	chr15	32613732	32615111	AC123768.2|ENST00000500941.2	+	32613732,32614108,32614739	32613998,32614202,32615111	0.769231
subcutaneous_adipose_tissue_female_adult_53_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	7	7	9	0.610420	2.947703	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100738442	100913524	ARHGAP42|ENST00000534060.5	+	100738442,100770342,100795104,100816714,100859553,100913451	100738498,100770438,100795166,100816856,100859625,100913524	0.777778
subcutaneous_adipose_tissue_female_adult_53_years	chr12	50924017	50924051	50924050	+	High_confidence	2	2	6	0.406947	2.584963	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50924004	50929955	METTL7A|ENST00000550502.1	+	50924004,50925036,50929913	50924080,50925536,50929955	0.666667
subcutaneous_adipose_tissue_female_adult_53_years	chr6	166642833	166642858	166642840	-	RAMPAGE_only	10	10	33	2.238206	3.925993	chr6	166642771	166643221	LTR|ERVL|LTR40c	+	chr6	166510279	166627972	RPS6KA2|ENST00000511034.1	-	166510279,166531231,166538667,166627635	166510357,166531313,166538784,166627972	0.666667
subcutaneous_adipose_tissue_female_adult_53_years	chr1	16017942	16017988	16017942	-	High_confidence	3	5	14	0.949542	2.653544	chr1	16017886	16017984	LINE|CR1|L3	+	chr1	16015498	16018005	HSPB7|ENST00000406363.2	-	16015498,16017073,16017764	16015759,16017219,16018005	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr13	47991641	47991650	47991649	-	RAMPAGE_only	13	16	40	2.712977	4.731309	chr13	47990978	47991673	LINE|L2|L2a	+	chr13	47942780	48001020	SUCLA2|ENST00000642944.1	-	47942780,47948939,47949482,47954139,47954395,47968594,47973263,47988540,47988881,47996842,48000906	47943445,47949028,47949603,47954282,47954557,47968733,47973392,47988703,47988981,47997023,48001020	0.850000
subcutaneous_adipose_tissue_female_adult_53_years	chr8	16186271	16186273	16186271	-	High_confidence	104	148	208	14.107482	6.384290	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.923077
subcutaneous_adipose_tissue_female_adult_53_years	chr6	35585756	35585796	35585756	-	RAMPAGE_only	5	5	15	1.017367	3.467720	chr6	35585678	35585742	DNA|hAT-Charlie|Charlie9	-	chr6	35573584	35688915	FKBP5|ENST00000539068.5	-	35573584,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35688731	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35642843,35688915	0.733333
subcutaneous_adipose_tissue_female_adult_53_years	chr3	194486631	194486632	194486631	-	High_confidence	5	5	8	0.542595	2.750000	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr1	78620056	78620058	78620056	+	High_confidence	8	16	16	1.085191	3.702820	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78641968	IFI44L|ENST00000476521.5	+	78620381,78628950,78629719,78635336,78637099,78641020,78641434,78641774	78620571,78628999,78629915,78635489,78637203,78641121,78641609,78641968	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	80	82	105	7.121566	5.887636	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.933333
subcutaneous_adipose_tissue_female_adult_53_years	chr6	108841936	108841937	108841936	+	High_confidence	25	25	26	1.763435	4.243856	chr6	108841964	108842055	LTR|ERVL|LTR16D2	+	chr6	108841822	108842355	STRG.36876.1	+	108841822	108842355	0.730769
subcutaneous_adipose_tissue_female_adult_53_years	chr3	33838228	33838281	33838256	+	RAMPAGE_only	4	4	18	1.220840	3.614369	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.833333
subcutaneous_adipose_tissue_female_adult_53_years	chr5	42175235	42175291	42175290	-	High_confidence	93	96	236	16.006566	6.086891	chr5	42175074	42175255	LTR|ERVL-MaLR|MSTC	-	chr5	42152961	42175279	STRG.28585.1	-	42152961,42156941,42159026,42159336,42175152	42153674,42157411,42159053,42159446,42175279	0.546610
subcutaneous_adipose_tissue_female_adult_53_years	chr2	207662375	207662376	207662375	+	High_confidence	11	11	17	1.153015	3.690117	chr2	207662277	207662604	LTR|ERVL-MaLR|MLT1A1	+	chr2	207662374	207667024	LINC01857|ENST00000429730.1	+	207662374,207666680	207662522,207667024	0.941176
subcutaneous_adipose_tissue_female_adult_53_years	chr5	38468517	38468533	38468532	-	High_confidence	2	2	7	0.474771	2.584963	chr5	38468426	38468568	SINE|MIR|MIRc	-	chr5	38466162	38468339	AC010457.1|ENST00000510137.1	-	38466162,38468238	38466398,38468339	0.571429
subcutaneous_adipose_tissue_female_adult_53_years	chrX	71198169	71198207	71198195	-	High_confidence	6	6	21	1.424313	3.784184	chrX	71198068	71198187	SINE|MIR|MIR3	-	chrX	71183558	71198175	AL590764.1|ENST00000450860.1	-	71183558,71197908	71184017,71198175	0.523810
subcutaneous_adipose_tissue_female_adult_53_years	chr17	64238619	64238620	64238619	-	RAMPAGE_only	10	10	10	0.678244	3.121928	chr17	64238450	64238811	LTR|ERVL-MaLR|THE1C	-	chr17	64147432	64230756	TEX2|NM_001288733.1	-	64147432,64150840,64152944,64154841,64160800,64171099,64177324,64188167,64193558,64194894,64212573,64230608	64149091,64150961,64153154,64154967,64160933,64171199,64177471,64188415,64193889,64195095,64214242,64230756	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr3	129559620	129559624	129559620	-	High_confidence	4	4	9	0.610420	2.500000	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555217	129560414	STRG.20275.4	-	129555217,129556616,129557082,129558427,129560329	129556428,129556691,129557223,129559783,129560414	0.888889
subcutaneous_adipose_tissue_female_adult_53_years	chr1	12356407	12356415	12356414	+	High_confidence	8	8	13	0.881718	2.625815	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12356350	12510346	VPS13D|ENST00000646411.1	+	12356350,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12356524,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	0.846154
subcutaneous_adipose_tissue_female_adult_53_years	chr6	79631294	79631329	79631328	+	High_confidence	29	31	87	5.900726	5.628251	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.931034
subcutaneous_adipose_tissue_female_adult_53_years	chr1	77169312	77169325	77169312	-	RAMPAGE_only	6	6	12	0.813893	3.277613	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77088989	77219426	PIGK|ENST00000370812.7	-	77088989,77122274,77154448,77161294,77161593,77163845,77166718,77169259,77206639,77210435,77219309	77092490,77122359,77154621,77161405,77161711,77163942,77166830,77169395,77206731,77210489,77219426	0.916667
subcutaneous_adipose_tissue_female_adult_53_years	chr5	14202692	14202697	14202696	+	High_confidence	16	17	28	1.899084	3.810081	chr5	14202502	14202919	LTR|ERVL-MaLR|THE1B	+	chr5	14202376	14290887	STRG.28110.11	+	14202376,14270824,14280321,14286870,14290715	14202836,14270899,14280436,14287063,14290887	0.821429
subcutaneous_adipose_tissue_female_adult_53_years	chr8	56559496	56559497	56559496	-	High_confidence	817	837	1121	76.031191	8.184971	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56496245	56559586	LINC00968|ENST00000519144.5	-	56496245,56520120,56559557	56496333,56520567,56559586	0.513827
subcutaneous_adipose_tissue_female_adult_53_years	chr11	3380960	3380961	3380960	+	High_confidence	28	29	30	2.034733	4.513153	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.566667
subcutaneous_adipose_tissue_female_adult_53_years	chr4	99319957	99319977	99319976	-	RAMPAGE_only	4	4	15	1.017367	3.378783	chr4	99319959	99320025	SINE|MIR|MIRb	-	chr4	99307242	99321398	ADH1B|ENST00000515694.4	-	99307242,99310764,99311520,99313820,99315897,99316214,99318045,99318784,99321313	99307864,99310903,99311656,99314081,99316117,99316302,99318184,99320914,99321398	0.933333
subcutaneous_adipose_tissue_female_adult_53_years	chr20	20267688	20267711	20267688	-	High_confidence	3	3	13	0.881718	3.084963	chr20	20267631	20267948	LTR|ERV1|MER61A	-	chr20	20258406	20267809	AL121721.1|ENST00000460400.1	-	20258406,20259697,20267493	20258559,20259796,20267809	0.538462
subcutaneous_adipose_tissue_female_adult_53_years	chr12	110440313	110440339	110440313	-	RAMPAGE_only	2	3	9	0.610420	3.169925	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr15	30624362	30624368	30624367	+	High_confidence	17	17	35	2.373855	3.483659	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.942857
subcutaneous_adipose_tissue_female_adult_53_years	chr2	96303166	96303232	96303177	-	RAMPAGE_only	4	6	19	1.288664	4.058814	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.947368
subcutaneous_adipose_tissue_female_adult_53_years	chr19	20423697	20423704	20423703	-	RAMPAGE_only	15	20	37	2.509504	4.291233	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.702703
subcutaneous_adipose_tissue_female_adult_53_years	chr9	134373102	134373106	134373105	+	High_confidence	7	8	13	0.881718	2.931209	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134373439	134440644	STRG.53110.1	+	134373439,134374006,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134373599,134374130,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440644	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr5	151687139	151687252	151687244	-	High_confidence	70	79	364	24.688094	6.848623	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151667473	151687295	STRG.32618.2	-	151667473,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687295	0.774725
subcutaneous_adipose_tissue_female_adult_53_years	chr20	45833282	45833308	45833293	-	High_confidence	10	12	22	1.492138	3.221928	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823237	45833278	STRG.85815.1	-	45823237,45823990,45824291,45824494,45824782,45833250	45823379,45824127,45824406,45824638,45824834,45833278	0.909091
subcutaneous_adipose_tissue_female_adult_53_years	chr21	42534417	42534440	42534417	-	High_confidence	6	6	13	0.881718	3.180833	chr21	42533957	42534487	LINE|L1|L1ME3	-	chr21	42527783	42534772	STRG.87679.1	-	42527783,42534142	42528825,42534772	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr2	11345395	11345442	11345436	-	High_confidence	35	38	84	5.697252	5.168546	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11179758	11345407	ROCK2|NM_001321643.1	-	11179758,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345407	0.952381
subcutaneous_adipose_tissue_female_adult_53_years	chr12	8681676	8681677	8681676	+	High_confidence	35	35	42	2.848626	4.765795	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.738095
subcutaneous_adipose_tissue_female_adult_53_years	chr3	43457461	43457465	43457461	-	RAMPAGE_only	2	4	8	0.542595	2.750000	chr3	43457279	43457666	LTR|ERVL-MaLR|THE1D	-	chr3	43366347	43621965	ANO10|ENST00000350459.8	-	43366347,43432610,43549719,43555277,43561219,43565652,43574808,43580352,43598531,43600383,43605713,43621908	43366974,43432727,43549848,43555469,43561402,43565727,43574864,43580472,43598666,43600581,43605863,43621965	0.875000
subcutaneous_adipose_tissue_female_adult_53_years	chr8	138608095	138608130	138608095	-	High_confidence	8	8	40	2.712977	5.021928	chr8	138608030	138608272	SINE|MIR|MIRb	+	chr8	138588234	138608314	STRG.48426.1	-	138588234,138591423,138594016,138596903,138598718,138602114,138604733,138606380,138607935	138589440,138591501,138594199,138596970,138598898,138602159,138604769,138606452,138608314	0.650000
subcutaneous_adipose_tissue_female_adult_53_years	chr9	114394480	114394502	114394480	-	High_confidence	37	37	58	3.933817	4.665286	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	0.913793
subcutaneous_adipose_tissue_female_adult_53_years	chr5	14202750	14202782	14202750	+	High_confidence	3	3	15	1.017367	3.128085	chr5	14202502	14202919	LTR|ERVL-MaLR|THE1B	+	chr5	14202376	14290887	STRG.28110.12	+	14202376,14270824,14280321,14286870,14290715	14203314,14270899,14280436,14287063,14290887	0.866667
subcutaneous_adipose_tissue_female_adult_53_years	chr9	22821392	22821393	22821392	+	RAMPAGE_only	12	12	12	0.813893	3.084963	chr9	22820568	22821847	DNA|TcMar-Mariner|HSMAR1	+	chr9	22808327	22821881	STRG.49635.5	+	22808327	22821881	0.916667
subcutaneous_adipose_tissue_female_adult_53_years	chr14	68882874	68882898	68882874	-	High_confidence	2	3	15	1.017367	2.599581	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr5	77088321	77088374	77088373	+	High_confidence	7	7	33	2.238206	4.567100	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088404	77148110	STRG.29681.13	+	77088404,77089345,77098654,77105655,77118319,77147651	77088472,77089403,77098747,77105689,77118521,77148110	0.575758
subcutaneous_adipose_tissue_female_adult_53_years	chr2	96638022	96638060	96638022	-	High_confidence	5	5	16	1.085191	3.625000	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.687500
subcutaneous_adipose_tissue_female_adult_53_years	chr15	92914950	92914960	92914950	+	High_confidence	6	6	14	0.949542	3.392747	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr13	37484779	37484788	37484779	-	High_confidence	2	4	6	0.406947	2.584963	chr13	37484620	37484966	LTR|ERVL-MaLR|THE1B	-	chr13	37481463	37484784	LINC01048|NR_125762.1	-	37481463,37484284,37484469,37484704	37481727,37484393,37484545,37484784	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr5	32403148	32403167	32403148	-	RAMPAGE_only	7	8	16	1.085191	3.323231	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354851	32415864	STRG.28277.2	-	32354851,32363947,32364163,32379114,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968	32355939,32364045,32364275,32379210,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415864	0.937500
subcutaneous_adipose_tissue_female_adult_53_years	chr7	80524839	80524856	80524846	+	RAMPAGE_only	9	12	26	1.763435	4.085055	chr7	80524761	80524908	LTR|ERV1|LTR38B	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.730769
subcutaneous_adipose_tissue_female_adult_53_years	chr4	99361501	99361502	99361501	-	RAMPAGE_only	34	36	45	3.052100	4.491419	chr4	99361269	99361501	SINE|MIR|MIR	-	chr4	99336491	99353045	ADH1C|NM_000669.4	-	99336491,99339576,99340574,99342794,99344861,99345178,99347005,99347744,99352657	99336776,99339715,99340710,99343055,99345081,99345266,99347144,99347846,99353045	0.644444
subcutaneous_adipose_tissue_female_adult_53_years	chr7	74664451	74664477	74664472	+	RAMPAGE_only	6	6	23	1.559962	3.594466	chr7	74664429	74664732	SINE|Alu|AluSz	-	chr7	74658030	74717066	GTF2I|ENST00000443166.5	+	74658030,74689123,74690972,74698960,74700246,74700605,74705163,74706389,74711031,74716893	74658068,74689227,74691111,74699095,74700430,74700634,74705218,74706433,74711109,74717066	0.652174
subcutaneous_adipose_tissue_female_adult_53_years	chr2	113117959	113117971	113117970	+	High_confidence	11	12	20	1.356489	4.037401	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.600000
subcutaneous_adipose_tissue_female_adult_53_years	chr2	189782426	189782433	189782426	-	High_confidence	3	3	10	0.678244	2.725481	chr2	189782212	189782378	LINE|L1|L1MB3	-	chr2	189770323	189783382	ORMDL1|ENST00000325795.7	-	189770323,189775564,189782421	189771902,189775716,189783382	0.600000
subcutaneous_adipose_tissue_female_adult_53_years	chr13	48492783	48492784	48492783	-	High_confidence	4	4	7	0.474771	2.584963	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.571429
subcutaneous_adipose_tissue_female_adult_53_years	chr14	53217882	53217893	53217892	+	High_confidence	3	5	12	0.813893	2.732159	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217890	53369501	AL365295.1|ENST00000435322.1	+	53217890,53304807,53318030,53369454	53218055,53305053,53318138,53369501	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr6	118651542	118651596	118651592	-	High_confidence	52	52	265	17.973475	6.435013	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.966038
subcutaneous_adipose_tissue_female_adult_53_years	chr12	7575242	7575278	7575277	-	RAMPAGE_only	5	7	22	1.492138	3.684184	chr12	7575005	7575582	LINE|L1|L1MB8	+	chr12	7470812	7503893	CD163|ENST00000359156.8	-	7470812,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7503644	7471397,7479996,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7503893	0.772727
subcutaneous_adipose_tissue_female_adult_53_years	chr10	109893145	109893166	109893145	-	High_confidence	3	5	13	0.881718	3.085055	chr10	109893130	109893242	LINE|L2|L2c	-	chr10	109884105	109892584	XPNPEP1|ENST00000505255.5	-	109884105,109886245,109888048,109888502,109891721,109892488	109884148,109886341,109888192,109888595,109891826,109892584	0.615385
subcutaneous_adipose_tissue_female_adult_53_years	chr1	51403420	51403433	51403432	-	RAMPAGE_only	5	6	11	0.746069	2.846439	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.818182
subcutaneous_adipose_tissue_female_adult_53_years	chr11	65430578	65430839	65430790	+	RAMPAGE_only	24	24	248	16.820460	5.645276	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.995968
subcutaneous_adipose_tissue_female_adult_53_years	chr6	137218725	137218756	137218725	-	High_confidence	13	13	20	1.356489	3.826875	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.850000
subcutaneous_adipose_tissue_female_adult_53_years	chr1	19257380	19257381	19257380	+	High_confidence	4	4	7	0.474771	2.807355	chr1	19257319	19257414	DNA|hAT-Charlie|MER20	-	chr1	19257711	19258739	MRTO4|ENST00000479559.1	+	19257711,19258476,19258680	19257984,19258553,19258739	0.714286
subcutaneous_adipose_tissue_female_adult_53_years	chr15	44662607	44662623	44662622	-	RAMPAGE_only	4	4	14	0.949542	3.392747	chr15	44662388	44662674	SINE|Alu|AluJb	+	chr15	44563120	44663647	SPG11|ENST00000427534.6	-	44563120,44567423,44569397,44570524,44572682,44573546,44574901,44583813,44585635,44589251,44592330,44595258,44596082,44596783,44598264,44598630,44600466,44606024,44608443,44610839,44613429,44615362,44620189,44621758,44622219,44622727,44626330,44628668,44629232,44633504,44648865,44651490,44652128,44657094,44659078,44660431,44663390	44563301,44567592,44569505,44570658,44572820,44573745,44575041,44584558,44585850,44589414,44592438,44595459,44596355,44596943,44598373,44598836,44600632,44606091,44608605,44610985,44613536,44615566,44620403,44621934,44622347,44622799,44626507,44628844,44629388,44633637,44649011,44651939,44652266,44657296,44659303,44660616,44663647	0.785714
subcutaneous_adipose_tissue_female_adult_53_years	chrX	13303406	13303409	13303406	-	High_confidence	83	98	139	9.427596	5.736679	chrX	13303238	13303604	LTR|ERVL-MaLR|THE1B	-	chrX	13266047	13303392	LINC02154|ENST00000412485.1	-	13266047,13287428,13303319	13267335,13287564,13303392	0.812950
subcutaneous_adipose_tissue_female_adult_53_years	chr17	59651214	59651229	59651214	+	RAMPAGE_only	2	2	9	0.610420	2.503258	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr11	77175226	77175303	77175302	+	High_confidence	45	46	191	12.954467	6.072485	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175243	77213918	STRG.59300.1	+	77175243,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353,77197480,77198494,77199648,77201447,77202299,77203059,77204075,77205461,77206096,77207288,77208429,77208696,77211151,77211820,77212951,77213859	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194524,77197598,77198621,77199818,77201638,77202424,77203217,77204229,77205617,77206202,77207402,77208517,77208803,77211337,77211937,77213035,77213918	0.979058
subcutaneous_adipose_tissue_female_adult_53_years	chr19	44893566	44893593	44893592	+	High_confidence	4	4	14	0.949542	3.238901	chr19	44893456	44893677	LINE|L2|L2b	-	chr19	44893828	44903132	TOMM40|ENST00000592041.1	+	44893828,44893960,44900729,44901027,44901207,44903029	44893881,44894066,44900852,44901104,44901452,44903132	0.714286
subcutaneous_adipose_tissue_female_adult_53_years	chr1	212792343	212792367	212792366	-	High_confidence	3	3	10	0.678244	2.721928	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.800000
subcutaneous_adipose_tissue_female_adult_53_years	chr14	27529239	27529240	27529239	+	High_confidence	77	85	100	6.782443	5.747427	chr14	27529044	27529416	LTR|ERVL-MaLR|THE1B	+	chr14	27529255	27639386	STRG.68457.1	+	27529255,27566793,27636419	27529333,27566853,27639386	0.550000
subcutaneous_adipose_tissue_female_adult_53_years	chr2	191682530	191682583	191682575	+	RAMPAGE_only	8	8	26	1.763435	4.053661	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191685894	STRG.14267.15	+	191678989,191681945,191682491,191684229	191679128,191682017,191683804,191685894	0.961538
subcutaneous_adipose_tissue_female_adult_53_years	chr2	24887163	24887185	24887184	-	RAMPAGE_only	20	21	39	2.645153	4.926428	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24841324	24878027	ADCY3|ENST00000433852.1	-	24841324,24841555,24842253,24872569,24877921	24841386,24841667,24842384,24872719,24878027	0.846154
subcutaneous_adipose_tissue_female_adult_53_years	chr8	144106344	144106369	144106344	+	High_confidence	3	3	14	0.949542	3.026987	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.642857
subcutaneous_adipose_tissue_female_adult_53_years	chr19	17197806	17197857	17197856	+	High_confidence	4	4	11	0.746069	3.277613	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr7	82214035	82214042	82214041	-	High_confidence	145	214	285	19.329964	6.168436	chr7	82213847	82214213	LTR|ERVL-MaLR|MLT1A0	-	chr7	82002047	82214029	STRG.42152.4	-	82002047,82005764,82007678,82012153,82013460,82014400,82032796,82038076,82060427,82064303,82066454,82084768,82117043,82136634,82170549,82213925	82005497,82005839,82007756,82012243,82013510,82014479,82032901,82038235,82060527,82064354,82066524,82084900,82117173,82136676,82170609,82214029	0.880702
subcutaneous_adipose_tissue_female_adult_53_years	chr10	109894097	109894098	109894097	-	High_confidence	11	13	13	0.881718	2.873141	chr10	109893960	109894097	SINE|MIR|MIRb	-	chr10	109888097	109893493	XPNPEP1|ENST00000502595.5	-	109888097,109888502,109891721,109893011,109893369	109888192,109888595,109891826,109893075,109893493	0.538462
subcutaneous_adipose_tissue_female_adult_53_years	chr10	77498936	77498961	77498960	-	High_confidence	54	86	138	9.359772	6.124818	chr10	77498859	77499086	SINE|MIR|MIR	+	chr10	77183472	77498970	STRG.55284.13	-	77183472,77184822,77251194,77403861,77493797	77183532,77184916,77251256,77404023,77498970	0.818841
subcutaneous_adipose_tissue_female_adult_53_years	chr12	8672518	8672519	8672518	-	RAMPAGE_only	19	19	23	1.559962	4.201841	chr12	8672365	8672715	LTR|ERVL-MaLR|THE1A	-	chr12	8645942	8662888	MFAP5|NM_001297710.1	-	8645942,8649500,8650501,8654436,8655414,8655785,8662046,8662626	8648203,8649574,8650589,8654481,8655447,8655830,8662106,8662888	0.521739
subcutaneous_adipose_tissue_female_adult_53_years	chr4	99306361	99306457	99306456	-	RAMPAGE_only	4	4	23	1.559962	3.762267	chr4	99306343	99306512	SINE|MIR|MIRc	-	chr4	99304963	99321399	ADH1B|ENST00000305046.12	-	99304963,99310764,99311520,99313820,99315897,99316214,99318045,99318784,99321313	99307864,99310903,99311656,99314081,99316117,99316302,99318184,99318886,99321399	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr1	39310282	39310305	39310304	+	RAMPAGE_only	4	4	12	0.813893	3.095795	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.916667
subcutaneous_adipose_tissue_female_adult_53_years	chr9	72295108	72295109	72295108	+	RAMPAGE_only	7	7	7	0.474771	2.807355	chr9	72295156	72295467	SINE|Alu|AluJb	+	chr9	73151730	73170393	ANXA1|NM_000700.2	+	73151730,73158521,73158694,73159328,73160262,73160802,73162781,73163475,73165115,73166096,73167496,73169031,73170050	73151924,73158601,73158803,73159423,73160376,73160893,73162861,73163532,73165209,73166192,73167555,73169154,73170393	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr3	37058846	37058887	37058886	-	RAMPAGE_only	4	4	12	0.813893	3.418296	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.916667
subcutaneous_adipose_tissue_female_adult_53_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	76	85	104	7.053741	5.515176	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.653846
subcutaneous_adipose_tissue_female_adult_53_years	chr14	50756678	50756716	50756715	-	RAMPAGE_only	3	3	7	0.474771	2.521641	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50739371	50755530	STRG.69681.9	-	50739371,50741581,50743415,50747991,50752517,50754562,50754741	50739487,50741728,50744365,50748105,50752733,50754632,50755530	0.714286
subcutaneous_adipose_tissue_female_adult_53_years	chr13	60410080	60410081	60410080	+	High_confidence	256	265	328	22.246414	7.015325	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60410064	60573870	STRG.66757.6	+	60410064,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573612	60410164,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573870	0.908537
subcutaneous_adipose_tissue_female_adult_53_years	chr1	179877352	179877369	179877352	-	High_confidence	2	2	10	0.678244	2.921928	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179843930	179877772	STRG.5940.1	-	179843930,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877772	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	92213450	92213451	92213450	+	High_confidence	33	34	36	2.441680	4.786426	chr12	92213036	92213590	LINE|L2|L2a	-	chr12	92213699	92244158	STRG.64510.1	+	92213699,92244144	92214100,92244158	0.750000
subcutaneous_adipose_tissue_female_adult_53_years	chr6	169654674	169654702	169654674	-	RAMPAGE_only	5	5	17	1.153015	3.625000	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169457252	169663461	STRG.39557.1	-	169457252,169572418,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197,169651929,169658275,169659085,169659450,169660662,169662303,169662963	169457634,169572540,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649275,169652008,169658358,169659207,169659518,169660766,169662897,169663461	0.705882
subcutaneous_adipose_tissue_female_adult_53_years	chr6	30546704	30546708	30546704	-	RAMPAGE_only	5	5	10	0.678244	2.921928	chr6	30546442	30546659	SINE|MIR|MIRb	-	chr6	30541376	30557174	GNL1|ENST00000376621.7	-	30541376,30546695,30547111,30547351,30552466,30553083,30553349,30554574,30554763,30555054,30555554,30556130	30546313,30546836,30547274,30547530,30552661,30553179,30553557,30554646,30554915,30555191,30555720,30557174	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr9	452108	452115	452108	+	RAMPAGE_only	3	3	7	0.474771	2.521641	chr9	452151	452338	DNA|hAT-Charlie|MER5A	+	chr9	386102	465241	STRG.48771.5	+	386102,390470,396784,399145,404917,406929,414781,418067,420400,420948,422047,426884,428361,429701,432165,433874,434782,439244,441285,441874,443426,446369,449783,452010,463516	386426,390566,396934,399259,405073,407069,414951,418207,420583,421078,422135,426981,428496,429854,432324,433975,434975,439388,441417,442009,443516,446606,449927,452117,465241	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr17	55882299	55882303	55882302	+	High_confidence	22	36	53	3.594695	5.336319	chr17	55882106	55882477	LTR|ERVL-MaLR|THE1C	+	chr17	55882300	56449186	ANKFN1|ENST00000635860.1	+	55882300,55938658,55965578,56046071,56227916,56326220,56350765,56353835,56372645,56374600,56440326,56442842,56449078	55882395,55938786,55965676,56046325,56227957,56326355,56350967,56354046,56372840,56374714,56440424,56442933,56449186	0.698113
subcutaneous_adipose_tissue_female_adult_53_years	chr2	96346410	96346413	96346412	+	High_confidence	16	29	34	2.306031	4.390320	chr2	96345873	96347263	LINE|L2|L2	-	chr2	96346354	96373583	STRG.11310.2	+	96346354,96351830,96353305,96354182,96359044,96360142,96360587,96364480,96365875,96367256,96368971,96369424,96373291	96346534,96352020,96353397,96354388,96359193,96360249,96360710,96364591,96366058,96367373,96369063,96369500,96373583	0.941176
subcutaneous_adipose_tissue_female_adult_53_years	chr2	48568986	48568988	48568987	+	High_confidence	5	9	9	0.610420	2.725481	chr2	48569019	48569241	SINE|MIR|MIRb	+	chr2	48569019	48679609	STON1-GTF2A1L|NM_172311.2	+	48569019,48580586,48591652,48620850,48621166,48642401,48645032,48646452,48669721,48671590,48679334	48569086,48582563,48591855,48620952,48621290,48642457,48645117,48647042,48669982,48671680,48679609	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr6	43013392	43013393	43013392	-	High_confidence	11	11	11	0.746069	3.459432	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr9	92559106	92559145	92559122	-	RAMPAGE_only	9	10	19	1.288664	3.350209	chr9	92557942	92559647	LINE|L1|L1PB1	-	chr9	92517687	92536705	STRG.51266.5	-	92517687,92522574,92536600	92517875,92522893,92536705	0.789474
subcutaneous_adipose_tissue_female_adult_53_years	chr12	92557311	92557368	92557348	+	High_confidence	9	9	56	3.798168	5.338343	chr12	92557054	92557684	LINE|L2|L2	-	chr12	92557282	92583442	STRG.64456.1	+	92557282,92582998	92557598,92583442	0.589286
subcutaneous_adipose_tissue_female_adult_53_years	chr17	72992966	72992968	72992967	-	High_confidence	21	27	32	2.170382	4.215061	chr17	72992805	72993163	LTR|ERVL-MaLR|THE1B	-	chr17	72648922	72992933	SLC39A11|ENST00000582769.5	-	72648922,72649169,72736649,72849633,72947730,72992890	72648961,72649268,72736719,72849804,72947875,72992933	0.593750
subcutaneous_adipose_tissue_female_adult_53_years	chr12	8567935	8567938	8567937	-	High_confidence	10	16	16	1.085191	3.452820	chr12	8567561	8568746	LTR|ERV1|MER52C	-	chr12	8566951	8567931	STRG.61632.1	-	8566951	8567931	0.625000
subcutaneous_adipose_tissue_female_adult_53_years	chr21	34511333	34511364	34511333	-	High_confidence	4	4	12	0.813893	3.188722	chr21	34511313	34511427	LTR|ERVL-MaLR|MSTD	+	chr21	34482200	34512207	STRG.87489.7	-	34482200,34493062	34492943,34512207	0.916667
subcutaneous_adipose_tissue_female_adult_53_years	chr3	194575246	194575247	194575246	-	High_confidence	66	67	68	4.612062	4.205040	chr3	194575117	194575783	LTR|ERV1|LTR8	-	chr3	194574648	194575256	STRG.22509.1	-	194574648	194575256	0.941176
subcutaneous_adipose_tissue_female_adult_53_years	chr6	31587007	31587014	31587009	+	High_confidence	29	50	78	5.290306	5.363937	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.987179
subcutaneous_adipose_tissue_female_adult_53_years	chr1	1655392	1655411	1655409	-	RAMPAGE_only	7	9	15	1.017367	3.521641	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.733333
subcutaneous_adipose_tissue_female_adult_53_years	chr6	106450964	106450991	106450990	+	RAMPAGE_only	7	7	20	1.356489	3.787144	chr6	106450935	106451084	LTR|ERVL-MaLR|MLT1L	-	chr6	106360807	106571978	CRYBG1|ENST00000633556.1	+	106360807,106451693,106511429,106519130,106525132,106525267,106527304,106530175,106539402,106541585,106543439,106544570,106544787,106551851,106552183,106553454,106555767,106558485,106560802,106561341,106563763,106568471	106361081,106451832,106513039,106521453,106525180,106525386,106527470,106530315,106539529,106541621,106543597,106544697,106544933,106551978,106552216,106553567,106555897,106558625,106560926,106561500,106563926,106571978	0.600000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	109236891	109236892	109236891	+	RAMPAGE_only	4	5	6	0.406947	2.584963	chr12	109236619	109237053	DNA|TcMar-Tigger|Tigger12c	-	chr12	109232668	109266555	ACACB|ENST00000538526.5	+	109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064,109260479,109262356,109264231,109265109,109265388,109266235	109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260149,109260657,109262469,109264386,109265280,109265525,109266555	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr5	78549216	78549272	78549271	-	High_confidence	3	5	14	0.949542	3.467720	chr5	78548966	78549452	LTR|ERVL-MaLR|MLT1H	-	chr5	78485214	78549151	LHFPL2|ENST00000515007.6	-	78485214,78509783,78549025	78489153,78510398,78549151	0.714286
subcutaneous_adipose_tissue_female_adult_53_years	chr7	25839075	25839076	25839075	+	RAMPAGE_only	30	30	31	2.102557	4.573557	chr7	25838942	25839178	LTR|ERVL-MaLR|MLT1I	+	chr7	25846668	25847312	STRG.40498.1	+	25846668	25847312	0.548387
subcutaneous_adipose_tissue_female_adult_53_years	chr1	244815771	244815772	244815771	+	High_confidence	7	7	9	0.610420	3.169925	chr1	244815533	244815948	LTR|ERV1|MER41A	+	chr1	244815821	244829701	STRG.7722.1	+	244815821,244829683	244816318,244829701	0.666667
subcutaneous_adipose_tissue_female_adult_53_years	chr1	114901925	114901926	114901925	-	High_confidence	10	10	14	0.949542	3.521641	chr1	114901450	114902331	LTR|ERV1|MER61-int	-	chr1	114898280	114901906	STRG.3946.1	-	114898280,114901842	114899924,114901906	0.928571
subcutaneous_adipose_tissue_female_adult_53_years	chr18	46087118	46087119	46087118	-	High_confidence	11	11	17	1.153015	3.734522	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.823529
subcutaneous_adipose_tissue_female_adult_53_years	chr1	161599635	161599647	161599646	+	High_confidence	4	4	8	0.542595	2.521641	chr1	161599475	161599694	LTR|ERV1|MER57-int	+	chr1	161599570	161605137	FCGR2C|ENST00000508651.1	+	161599570,161601239,161604942	161599792,161601364,161605137	0.625000
subcutaneous_adipose_tissue_female_adult_53_years	chr1	32637304	32637320	32637312	-	RAMPAGE_only	16	17	36	2.441680	4.675698	chr1	32637281	32637581	SINE|Alu|AluSx3	+	chr1	32631826	32634522	ZBTB8OS|ENST00000473383.1	-	32631826,32633644,32633950	32631879,32633727,32634522	0.694444
subcutaneous_adipose_tissue_female_adult_53_years	chr8	80485592	80485593	80485592	+	High_confidence	5	5	8	0.542595	3.000000	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr1	19980361	19980363	19980361	-	High_confidence	12	20	20	1.356489	3.408695	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	0.950000
subcutaneous_adipose_tissue_female_adult_53_years	chr7	11194708	11194730	11194708	+	High_confidence	65	73	145	9.834543	6.110558	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11194715	11421830	STRG.39999.1	+	11194715,11197309,11240536,11244257,11248292,11322248,11379286,11383796,11400379	11194784,11197444,11240731,11244479,11253225,11322424,11379369,11383908,11421830	0.855172
subcutaneous_adipose_tissue_female_adult_53_years	chr4	79493219	79493298	79493219	+	High_confidence	5	5	29	1.966909	4.116265	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.793103
subcutaneous_adipose_tissue_female_adult_53_years	chr19	44914313	44914322	44914321	+	High_confidence	29	30	45	3.052100	5.124093	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.800000
subcutaneous_adipose_tissue_female_adult_53_years	chr16	28538613	28538696	28538668	-	High_confidence	3	3	22	1.492138	3.684184	chr16	28538407	28538698	SINE|Alu|AluJo	+	chr16	28537506	28538951	NUPR1|ENST00000567646.1	-	28537506,28538005,28538525,28538795	28537669,28538155,28538654,28538951	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chrX	54998780	54998805	54998788	-	High_confidence	65	83	166	11.258856	6.142945	chrX	54998783	54998927	LINE|L1|L1ME4c	+	chrX	54932029	54998904	STRG.90113.1	-	54932029,54933820,54934946,54937594,54945438,54949074,54951904,54958305,54958850,54959826,54960823,54963256,54990638,54998405	54933462,54933885,54935009,54937724,54945543,54949221,54956274,54958362,54958925,54959893,54960917,54963382,54990720,54998904	0.789157
subcutaneous_adipose_tissue_female_adult_53_years	chr12	79873266	79873267	79873266	-	High_confidence	97	97	139	9.427596	4.740364	chr12	79873243	79873519	DNA|hAT-Charlie|Charlie1a	+	chr12	79828370	79872872	PPP1R12A|ENST00000548318.1	-	79828370,79832331,79845301,79848787,79872807	79828464,79832491,79845420,79848931,79872872	0.985612
subcutaneous_adipose_tissue_female_adult_53_years	chr3	11308479	11308501	11308479	+	High_confidence	4	5	15	1.017367	3.323231	chr3	11308511	11308695	LINE|L2|L2c	+	chr3	11308474	11313396	ATG7|ENST00000464282.1	+	11308474,11308983,11313303	11308861,11309061,11313396	0.533333
subcutaneous_adipose_tissue_female_adult_53_years	chr10	35449689	35449725	35449724	+	RAMPAGE_only	13	17	72	4.883359	5.221805	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.541667
subcutaneous_adipose_tissue_female_adult_53_years	chr1	116390239	116390261	116390239	+	RAMPAGE_only	2	2	9	0.610420	2.500000	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.888889
subcutaneous_adipose_tissue_female_adult_53_years	chr5	173790860	173790861	173790860	-	High_confidence	4	6	7	0.474771	2.584963	chr5	173790732	173790899	DNA|hAT-Tip100|MER115	-	chr5	173786789	173790942	LINC01485|NR_108028.1	-	173786789,173787688,173790635,173790808	173787247,173787745,173790727,173790942	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr5	39134902	39134960	39134959	-	RAMPAGE_only	4	4	18	1.220840	3.734522	chr5	39134954	39135006	SINE|tRNA-RTE|MamSINE1	-	chr5	39107307	39127807	FYB1|ENST00000646444.1	-	39107307,39108230,39110355,39118873,39119534,39122335,39124252,39125971,39127740	39107465,39108262,39110389,39119036,39119634,39122402,39124278,39126135,39127807	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr3	188947173	188947237	188947236	+	High_confidence	40	40	146	9.902367	6.189447	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189226625	STRG.22426.2	+	188947213,189000773,189004542,189023749,189099996,189127056,189132398,189147583,189207375,189215291	188947425,189000911,189004760,189023946,189100204,189127210,189132697,189150872,189207594,189226625	0.698630
subcutaneous_adipose_tissue_female_adult_53_years	chr8	129970965	129970966	129970965	-	High_confidence	7	8	9	0.610420	3.000000	chr8	129970879	129971079	SINE|MIR|MIR	+	chr8	129855582	129970990	FAM49B|ENST00000519142.5	-	129855582,129862228,129871374,129879388,129903311,129904498,129912469,129970942	129855747,129862334,129871496,129879471,129903350,129904585,129912515,129970990	0.777778
subcutaneous_adipose_tissue_female_adult_53_years	chr9	92536651	92536704	92536674	-	High_confidence	12	12	62	4.205115	5.433799	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.983871
subcutaneous_adipose_tissue_female_adult_53_years	chr13	27445105	27445120	27445105	-	RAMPAGE_only	6	7	12	0.813893	3.277613	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.750000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	47753934	47753945	47753934	+	High_confidence	2	2	8	0.542595	2.807355	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47753929	47756485	SLC48A1|ENST00000552003.1	+	47753929,47755701	47754027,47756485	0.750000
subcutaneous_adipose_tissue_female_adult_53_years	chr3	42770599	42770600	42770599	+	High_confidence	100	101	104	7.053741	5.100211	chr3	42769529	42771022	LTR|ERV1|LTR12C	+	chr3	42770611	42773635	LOC729083|NR_122070.1	+	42770611,42773204	42771077,42773635	0.971154
subcutaneous_adipose_tissue_female_adult_53_years	chr16	66408519	66408553	66408519	+	High_confidence	9	9	28	1.899084	4.310443	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.714286
subcutaneous_adipose_tissue_female_adult_53_years	chr1	162781344	162781504	162781398	+	RAMPAGE_only	5	6	46	3.119924	4.739991	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.934783
subcutaneous_adipose_tissue_female_adult_53_years	chr20	16864352	16864353	16864352	+	RAMPAGE_only	6	6	9	0.610420	3.169925	chr20	16864107	16864582	LTR|ERVL-MaLR|MLT1F1	+	chr20	16873449	16874535	STRG.84908.1	+	16873449	16874535	0.666667
subcutaneous_adipose_tissue_female_adult_53_years	chr20	46363941	46363984	46363963	-	High_confidence	16	17	48	3.255573	5.095176	chr20	46363820	46363964	LINE|L2|L2a	+	chr20	46349527	46364401	SLC35C2|ENST00000243896.6	-	46349527,46350760,46352050,46354881,46355072,46355801,46356573,46357622,46358386,46364370	46350524,46350890,46352226,46354965,46355241,46355874,46356637,46357773,46358958,46364401	0.520833
subcutaneous_adipose_tissue_female_adult_53_years	chr14	77076158	77076194	77076188	-	High_confidence	46	48	162	10.987558	6.250840	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77073707	77076297	STRG.70683.2	-	77073707,77076104	77074598,77076297	0.759259
subcutaneous_adipose_tissue_female_adult_53_years	chr11	123060124	123060256	123060124	-	High_confidence	13	14	132	8.952825	4.989638	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.545455
subcutaneous_adipose_tissue_female_adult_53_years	chr4	128570309	128570407	128570309	-	High_confidence	36	37	138	9.359772	6.098076	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.884058
subcutaneous_adipose_tissue_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	5282	5486	20643	1400.099797	7.538557	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.521484
subcutaneous_adipose_tissue_female_adult_53_years	chr14	105024990	105025023	105025018	-	High_confidence	4	4	11	0.746069	2.913977	chr14	105024875	105025057	LTR|ERVL-MaLR|MLT1H	-	chr14	105009697	105025109	STRG.71487.2	-	105009697,105024872	105011935,105025109	0.818182
subcutaneous_adipose_tissue_female_adult_53_years	chr18	54234971	54234998	54234971	-	RAMPAGE_only	42	43	96	6.511146	5.638152	chr18	54234703	54235088	LTR|ERVL|LTR79	-	chr18	54151600	54224788	MBD2|ENST00000256429.7	-	54151600,54159764,54164522,54166075,54188873,54204997,54224017	54155311,54159903,54164700,54166166,54189011,54205157,54224788	0.947917
subcutaneous_adipose_tissue_female_adult_53_years	chr1	203372920	203372945	203372944	+	High_confidence	8	10	15	1.017367	3.773557	chr1	203372836	203373024	LTR|ERVL-MaLR|MLT1J2	+	chr1	203372982	203381516	STRG.6476.1	+	203372982,203374577,203375209,203378646,203379902	203373112,203374729,203375413,203378785,203381516	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr3	189121294	189121345	189121344	+	RAMPAGE_only	6	6	29	1.966909	3.676441	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.689655
subcutaneous_adipose_tissue_female_adult_53_years	chr5	115956529	115956676	115956675	+	High_confidence	234	242	2031	137.751426	7.591564	chr5	115956262	115957250	LINE|L2|L2b	-	chr5	115956547	116026230	STRG.31039.4	+	115956547,115958428,115983286,115984569,115987812,115992122,115993740,115999761,116000432,116000592,116001066,116002834,116003240,116005911,116010514,116012373,116014419,116015251,116015627,116025977	115956920,115963399,115983429,115984709,115987939,115992277,115993854,115999902,116000498,116000658,116001239,116002911,116003380,116005967,116010894,116012468,116014527,116015419,116022466,116026230	0.776465
subcutaneous_adipose_tissue_female_adult_53_years	chr3	11225866	11225906	11225885	-	High_confidence	9	9	38	2.577329	4.807009	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.763158
subcutaneous_adipose_tissue_female_adult_53_years	chr1	1721636	1721637	1721636	-	High_confidence	5	5	8	0.542595	2.521641	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.875000
subcutaneous_adipose_tissue_female_adult_53_years	chr14	101823607	101823653	101823652	+	High_confidence	13	13	25	1.695611	4.163856	chr14	101823598	101823757	SINE|MIR|MIRc	-	chr14	101824161	101824478	PPP2R5C|ENST00000607042.1	+	101824161	101824478	0.520000
subcutaneous_adipose_tissue_female_adult_53_years	chr20	20267836	20267837	20267836	-	High_confidence	7	7	8	0.542595	2.521641	chr20	20267631	20267948	LTR|ERV1|MER61A	-	chr20	20258406	20267809	AL121721.1|ENST00000460400.1	-	20258406,20259697,20267493	20258559,20259796,20267809	0.875000
subcutaneous_adipose_tissue_female_adult_53_years	chr5	122074155	122074161	122074155	-	RAMPAGE_only	8	9	16	1.085191	3.250000	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065943	122076083	LOX|ENST00000505593.5	-	122065943,122070052,122070493,122074012,122075403,122076017	122066749,122070168,122070589,122074169,122075541,122076083	0.937500
subcutaneous_adipose_tissue_female_adult_53_years	chr19	40268642	40268670	40268657	-	High_confidence	13	13	66	4.476413	3.730130	chr19	40268469	40268613	SINE|MIR|MIRb	-	chr19	40255243	40269589	AKT2|ENST00000427375.1	-	40255243,40256925,40265221,40268583,40269422	40255269,40257054,40265351,40268685,40269589	0.878788
subcutaneous_adipose_tissue_female_adult_53_years	chr17	20095868	20095889	20095888	+	RAMPAGE_only	6	6	12	0.813893	3.584963	chr17	20095831	20095918	SINE|MIR|MIR3	-	chr17	20087021	20314755	SPECC1|ENST00000261503.9	+	20087021,20096630,20110426,20204332,20227412,20231757,20232199,20245925,20247218,20253504,20257450,20260191,20296960,20306022,20313975	20087051,20096798,20110562,20205912,20227620,20231831,20232405,20246071,20247319,20253586,20257607,20260294,20297077,20306082,20314755	0.666667
subcutaneous_adipose_tissue_female_adult_53_years	chr7	107580245	107580267	107580245	+	High_confidence	346	353	1691	114.691118	6.850382	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.962153
subcutaneous_adipose_tissue_female_adult_53_years	chr16	8842153	8842179	8842153	+	High_confidence	46	46	78	5.290306	4.397573	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.974359
subcutaneous_adipose_tissue_female_adult_53_years	chr2	3536839	3536873	3536857	-	High_confidence	6	6	40	2.712977	4.641315	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3533223	3536869	AC108488.1|ENST00000438482.1	-	3533223,3534112,3536723	3533848,3534255,3536869	0.600000
subcutaneous_adipose_tissue_female_adult_53_years	chr15	33194695	33194709	33194708	-	High_confidence	3	3	8	0.542595	2.500000	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.875000
subcutaneous_adipose_tissue_female_adult_53_years	chr2	96346311	96346359	96346311	+	High_confidence	5	5	23	1.559962	4.095795	chr2	96345873	96347263	LINE|L2|L2	-	chr2	96346354	96373583	STRG.11310.2	+	96346354,96351830,96353305,96354182,96359044,96360142,96360587,96364480,96365875,96367256,96368971,96369424,96373291	96346534,96352020,96353397,96354388,96359193,96360249,96360710,96364591,96366058,96367373,96369063,96369500,96373583	0.956522
subcutaneous_adipose_tissue_female_adult_53_years	chr5	41150834	41150846	41150845	-	RAMPAGE_only	12	15	26	1.763435	4.133661	chr5	41150606	41150900	SINE|Alu|AluSx4	+	chr5	41142233	41213510	C6|ENST00000337836.9	-	41142233,41149240,41149934,41153809,41154971,41158673,41159081,41160141,41161692,41172224,41176474,41181358,41186069,41195791,41199767,41201557,41203087,41213375	41143006,41149482,41150025,41153998,41155104,41158785,41159253,41160367,41161859,41172347,41176715,41181559,41186208,41195933,41199912,41201714,41203250,41213510	0.576923
subcutaneous_adipose_tissue_female_adult_53_years	chr14	88143203	88143263	88143262	+	High_confidence	6	8	29	1.966909	4.323161	chr14	88143271	88143395	LTR|ERV1|HUERS-P2-int	+	chr14	88143059	88180141	STRG.70885.1	+	88143059,88179897	88143298,88180141	0.517241
subcutaneous_adipose_tissue_female_adult_53_years	chr9	132789820	132789856	132789820	-	RAMPAGE_only	3	3	7	0.474771	2.521641	chr9	132789646	132790007	LTR|ERVL-MaLR|MLT1E2	-	chr9	132725582	132727598	AK8|ENST00000467161.1	-	132725582,132727453	132725925,132727598	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr11	46338794	46338809	46338794	+	RAMPAGE_only	4	5	10	0.678244	3.169925	chr11	46338709	46338886	SINE|MIR|MIRb	+	chr11	46332904	46380554	DGKZ|NM_201532.2	+	46332904,46367290,46367651,46368004,46369493,46369940,46371312,46371486,46371703,46372074,46372427,46372616,46372770,46372960,46374156,46374398,46374603,46374765,46374933,46375431,46375850,46376065,46376327,46376523,46377072,46378197,46378456,46378990,46379202,46379468,46379830	46333487,46367399,46367747,46368079,46369550,46370009,46371384,46371603,46371775,46372170,46372510,46372677,46372884,46373101,46374235,46374454,46374666,46374839,46375045,46375631,46375951,46376145,46376397,46376564,46377212,46378229,46378500,46379111,46379236,46379568,46380554	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr19	54617128	54617152	54617128	+	High_confidence	5	5	23	1.559962	4.095795	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.652174
subcutaneous_adipose_tissue_female_adult_53_years	chr9	5013680	5013697	5013680	+	RAMPAGE_only	2	4	9	0.610420	2.750000	chr9	5013537	5013683	LINE|L2|L2b	+	chr9	4985244	5128183	JAK2|ENST00000381652.3	+	4985244,4985939,5021962,5029782,5044402,5050685,5054562,5055668,5064882,5066677,5069021,5069924,5072491,5073697,5077452,5078305,5080228,5080532,5081724,5089673,5090445,5090738,5123003,5126332,5126683	4985630,4986022,5022213,5029906,5044520,5050831,5054884,5055788,5065040,5066789,5069208,5070052,5072626,5073785,5077580,5078444,5080380,5080683,5081861,5089863,5090570,5090911,5123121,5126446,5128183	0.555556
subcutaneous_adipose_tissue_female_adult_53_years	chr9	33394018	33394103	33394066	-	High_confidence	48	54	183	12.411871	6.353310	chr9	33394009	33394115	LINE|L2|L2b	+	chr9	33385505	33394176	AQP7|ENST00000447660.3	-	33385505,33386076,33386403,33393796	33385866,33386195,33386541,33394176	0.923497
subcutaneous_adipose_tissue_female_adult_53_years	chr3	134485443	134485494	134485443	-	High_confidence	8	8	77	5.222481	5.230385	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.545455
subcutaneous_adipose_tissue_female_adult_53_years	chr16	2760017	2760038	2760017	+	High_confidence	4	4	8	0.542595	3.000000	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr13	50715096	50715097	50715096	-	High_confidence	7	7	7	0.474771	2.807355	chr13	50714806	50715412	LTR|ERVL-MaLR|MLT1E2	-	chr13	50711007	50715478	STRG.66613.2	-	50711007,50714877	50713240,50715478	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr15	80059915	80059933	80059918	+	High_confidence	45	59	119	8.071108	5.546198	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.941176
subcutaneous_adipose_tissue_female_adult_53_years	chr19	49086520	49086521	49086520	+	High_confidence	9	11	14	0.949542	3.378783	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.928571
subcutaneous_adipose_tissue_female_adult_53_years	chr7	104940943	104940944	104940943	+	High_confidence	169	171	171	11.597978	5.051123	chr7	104939974	104941430	LTR|ERV1|LTR12C	+	chr7	104941062	104962060	AC007384.1|ENST00000415513.1	+	104941062,104961983	104941670,104962060	0.994152
subcutaneous_adipose_tissue_female_adult_53_years	chr5	180830955	180831032	180831031	+	High_confidence	16	16	130	8.817176	6.194499	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831026	180834779	LINC00847|ENST00000508309.1	+	180831026,180834311	180831229,180834779	0.700000
subcutaneous_adipose_tissue_female_adult_53_years	chr8	17895504	17895513	17895511	-	High_confidence	5	7	15	1.017367	3.807355	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.866667
subcutaneous_adipose_tissue_female_adult_53_years	chr5	173790917	173790931	173790930	-	High_confidence	5	5	17	1.153015	3.852169	chr5	173790732	173790899	DNA|hAT-Tip100|MER115	-	chr5	173786927	173790925	LINC01485|ENST00000523617.5	-	173786927,173787688,173790635,173790808	173787247,173787745,173790727,173790925	0.529412
subcutaneous_adipose_tissue_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	593	656	1012	68.638327	5.430467	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.987154
subcutaneous_adipose_tissue_female_adult_53_years	chr14	95481761	95481781	95481761	-	RAMPAGE_only	17	18	34	2.306031	4.741364	chr14	95481614	95481737	LTR|ERVL|LTR33A_	-	chr14	95443660	95475836	SYNE3|ENST00000553340.1	-	95443660,95445908,95449930,95452246,95455376,95457176,95465930,95467794,95475677	95444628,95446091,95450105,95452383,95455724,95457338,95466240,95467967,95475836	0.941176
subcutaneous_adipose_tissue_female_adult_53_years	chr9	35644639	35644677	35644639	-	RAMPAGE_only	8	9	23	1.559962	4.349649	chr9	35644437	35644668	LINE|CR1|L3	+	chr9	35609532	35619542	CD72|ENST00000396757.5	-	35609532,35610601,35611803,35612847,35615942,35616599,35617175,35618013,35618221,35619511	35610300,35610753,35611919,35612993,35616278,35616689,35617247,35618121,35618437,35619542	0.521739
subcutaneous_adipose_tissue_female_adult_53_years	chr6	109687612	109687658	109687657	+	RAMPAGE_only	5	5	26	1.763435	3.943465	chr6	109687332	109687853	LTR|ERVL-MaLR|MLT1E1A	+	chr6	109691220	109825431	FIG4|NM_014845.5	+	109691220,109715077,109716444,109727108,109732636,109735149,109738324,109741443,109743109,109743674,109760249,109762090,109763936,109765012,109766728,109776921,109784969,109786301,109789593,109791375,109792581,109796764,109825087	109691501,109715176,109716568,109727265,109732687,109735298,109738453,109741544,109743272,109743772,109760383,109762207,109763982,109765161,109766895,109777060,109785028,109786449,109789677,109791571,109792664,109796851,109825431	0.884615
subcutaneous_adipose_tissue_female_adult_53_years	chr2	201115931	201116034	201116007	+	High_confidence	11	11	66	4.476413	4.960670	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.924242
subcutaneous_adipose_tissue_female_adult_53_years	chr1	203797179	203797206	203797179	+	High_confidence	2	2	7	0.474771	2.584963	chr1	203797152	203797273	SINE|MIR|MIR3	+	chr1	203797522	203800462	ZBED6|NM_001174108.1	+	203797522	203800462	0.571429
subcutaneous_adipose_tissue_female_adult_53_years	chr10	86981263	86981264	86981263	+	RAMPAGE_only	14	16	16	1.085191	4.000000	chr10	86981077	86981384	LTR|ERVL-MaLR|THE1C	+	chr10	86982598	87009905	STRG.55391.2	+	86982598,86992246,86993361,86994823,86999448,87000318,87001635,87004324,87007654,87008354	86983941,86992469,86993552,86994903,86999591,87000434,87001736,87004360,87007706,87009905	0.937500
subcutaneous_adipose_tissue_female_adult_53_years	chr12	50924078	50924079	50924078	+	High_confidence	12	15	15	1.017367	3.182006	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	0.933333
subcutaneous_adipose_tissue_female_adult_53_years	chr5	96979767	96979857	96979767	+	RAMPAGE_only	3	3	18	1.220840	3.852169	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	0.944444
subcutaneous_adipose_tissue_female_adult_53_years	chr2	241843101	241843143	241843115	+	High_confidence	3	3	22	1.492138	4.021928	chr2	241842855	241843211	LINE|L1|L1MB3	-	chr2	241843148	241854143	STRG.15908.1	+	241843148,241853982	241843663,241854143	0.772727
subcutaneous_adipose_tissue_female_adult_53_years	chr9	13386132	13386133	13386132	+	RAMPAGE_only	18	18	26	1.763435	4.213661	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.884615
subcutaneous_adipose_tissue_female_adult_53_years	chr16	21756722	21756733	21756732	+	High_confidence	3	4	10	0.678244	2.725481	chr16	21756601	21757033	DNA|hAT-Charlie|MER113	+	chr16	21756747	21760814	STRG.75366.1	+	21756747,21760469	21757277,21760814	0.900000
subcutaneous_adipose_tissue_female_adult_53_years	chr1	54277516	54277604	54277603	-	High_confidence	6	6	21	1.424313	4.106603	chr1	54277464	54277668	SINE|MIR|MIR1_Amn	+	chr1	54226638	54277831	STRG.1848.4	-	54226638,54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54277188	54227160,54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54251860,54277831	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr3	44439853	44439876	44439857	-	RAMPAGE_only	3	3	15	1.017367	2.950212	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431719	44477670	ZNF445|ENST00000396077.7	-	44431719,44449512,44450446,44450867,44451313,44455120,44458243,44477590	44448739,44449623,44450573,44450962,44451482,44455696,44458364,44477670	0.600000
subcutaneous_adipose_tissue_female_adult_53_years	chr1	97904654	97904676	97904654	-	RAMPAGE_only	23	25	64	4.340764	5.195357	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.750000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	12927712	12927751	12927733	+	High_confidence	5	5	21	1.424313	4.106603	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.714286
subcutaneous_adipose_tissue_female_adult_53_years	chr22	38192091	38192117	38192097	-	High_confidence	6	6	15	1.017367	3.521641	chr22	38191851	38192921	LINE|L2|L2c	-	chr22	38111871	38192100	STRG.88762.1	-	38111871,38112503,38113486,38115526,38116074,38120758,38122199,38123094,38126370,38129453,38132830,38134987,38139981,38143104,38144895,38145437,38169217,38192032	38112305,38112577,38113654,38115681,38116211,38120909,38122285,38123258,38126449,38129562,38133013,38135084,38140169,38143288,38144978,38145653,38169471,38192100	0.866667
subcutaneous_adipose_tissue_female_adult_53_years	chr10	118322502	118322503	118322502	-	RAMPAGE_only	5	5	8	0.542595	2.500000	chr10	118322113	118322801	LINE|L1|L1MC4	+	chr10	118310635	118326349	FAM204A|ENST00000491416.5	-	118310635,118311206,118326153	118310908,118311313,118326349	0.625000
subcutaneous_adipose_tissue_female_adult_53_years	chr10	28335265	28335270	28335269	-	High_confidence	9	13	20	1.356489	3.484184	chr10	28334857	28335233	LTR|ERVL-MaLR|MLT1F	-	chr10	28334869	28335245	STRG.53891.1	-	28334869	28335245	0.900000
subcutaneous_adipose_tissue_female_adult_53_years	chr7	101217580	101217599	101217580	-	High_confidence	3	5	13	0.881718	3.546594	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	16259104	16259105	16259104	+	High_confidence	6	6	8	0.542595	3.000000	chr12	16259051	16259251	SINE|Alu|AluJb	-	chr12	16259145	16266703	STRG.62363.1	+	16259145,16262093	16259195,16266703	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr3	188951169	188951170	188951169	+	RAMPAGE_only	11	11	11	0.746069	3.027169	chr3	188950993	188951176	SINE|MIR|MIRc	+	chr3	188948756	188969354	STRG.22434.1	+	188948756	188969354	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr14	50756877	50756883	50756882	-	RAMPAGE_only	4	5	10	0.678244	2.921928	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr1	153967486	153967512	153967486	+	High_confidence	5	6	16	1.085191	3.077820	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.750000
subcutaneous_adipose_tissue_female_adult_53_years	chr6	109325608	109325648	109325608	+	High_confidence	7	7	26	1.763435	4.183465	chr6	109324446	109326053	LINE|L2|L2a	-	chr6	109325629	109355046	STRG.36855.3	+	109325629,109329002,109336367,109337395,109338447,109340901,109341301,109342398,109343986,109348426,109354847	109325795,109329112,109336517,109337939,109338615,109341054,109341433,109342551,109344196,109348547,109355046	0.923077
subcutaneous_adipose_tissue_female_adult_53_years	chr14	95516099	95516122	95516119	+	High_confidence	6	7	16	1.085191	3.456565	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.937500
subcutaneous_adipose_tissue_female_adult_53_years	chr16	71565253	71565270	71565269	-	High_confidence	5	5	10	0.678244	2.725481	chr16	71565157	71565453	SINE|Alu|AluSg	-	chr16	71478969	71565089	ZNF19|ENST00000566202.5	-	71478969,71482081,71484588,71546201,71564892	71479005,71482143,71484748,71546333,71565089	0.700000
subcutaneous_adipose_tissue_female_adult_53_years	chr11	108224074	108224075	108224074	+	High_confidence	9	10	14	0.949542	3.546594	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108223528	108253996	STRG.60250.8	+	108223528,108227594,108227775,108229177,108235669,108243952,108244787,108246963,108248932,108250700,108251836,108252816,108253813	108225574,108227696,108227888,108229323,108235834,108244118,108245026,108247127,108249102,108251072,108252031,108252912,108253996	0.928571
subcutaneous_adipose_tissue_female_adult_53_years	chr9	68975832	68975855	68975854	-	High_confidence	33	35	168	11.394505	5.490452	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.583333
subcutaneous_adipose_tissue_female_adult_53_years	chr5	168669803	168669900	168669803	-	RAMPAGE_only	6	7	47	3.187748	4.472159	chr5	168669607	168669760	SINE|MIR|MIRc	-	chr5	168661732	168883338	SLIT3|ENST00000404867.7	-	168661732,168669782,168671197,168673176,168683965,168685686,168686978,168692606,168696291,168700581,168707975,168710894,168712282,168722255,168722932,168724415,168748301,168749471,168752954,168753863,168760861,168762538,168772780,168774234,168785906,168789559,168795506,168806445,168817299,168823259,168844583,168883264	168666689,168669991,168671483,168673331,168684096,168685927,168687116,168692700,168696431,168700679,168708121,168711058,168712354,168722327,168723004,168724484,168748434,168749635,168753098,168754007,168760936,168762689,168772944,168774378,168785978,168789631,168795578,168806587,168817463,168823331,168844655,168883338	0.978723
subcutaneous_adipose_tissue_female_adult_53_years	chr2	218287266	218287280	218287279	-	High_confidence	8	8	19	1.288664	3.932138	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.842105
subcutaneous_adipose_tissue_female_adult_53_years	chr12	102108244	102108245	102108244	+	High_confidence	6	6	9	0.610420	2.725481	chr12	102108033	102108604	LTR|ERVL|MLT2B3	+	chr12	102108264	102108696	STRG.64881.1	+	102108264	102108696	0.555556
subcutaneous_adipose_tissue_female_adult_53_years	chr4	79492572	79492596	79492595	+	High_confidence	6	6	23	1.559962	3.975418	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.869565
subcutaneous_adipose_tissue_female_adult_53_years	chr7	7157370	7157382	7157381	+	RAMPAGE_only	4	4	8	0.542595	2.750000	chr7	7157366	7157507	LINE|L1|L1M8	-	chr7	7182614	7248647	C1GALT1|ENST00000436587.6	+	7182614,7234302,7238254,7243523	7182820,7234539,7238922,7248647	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr7	137308	137323	137314	+	High_confidence	14	15	34	2.306031	4.812500	chr7	137253	137433	LINE|L1|L1ME2	+	chr7	137326	145965	STRG.39666.1	+	137326,145075	137542,145965	0.588235
subcutaneous_adipose_tissue_female_adult_53_years	chr8	38825317	38825361	38825360	+	RAMPAGE_only	7	7	29	1.966909	4.392127	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.896552
subcutaneous_adipose_tissue_female_adult_53_years	chr11	93499283	93499330	93499283	-	High_confidence	2	2	12	0.813893	3.277613	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	0.916667
subcutaneous_adipose_tissue_female_adult_53_years	chr13	49495740	49495744	49495740	+	High_confidence	5	5	13	0.881718	3.392747	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495664	49518060	PHF11|ENST00000481509.5	+	49495664,49513058,49518017	49496095,49513166,49518060	0.923077
subcutaneous_adipose_tissue_female_adult_53_years	chr2	143070964	143070967	143070964	+	RAMPAGE_only	20	21	37	2.509504	4.443569	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143129313	143768352	ARHGAP15|ENST00000295095.10	+	143129313,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.648649
subcutaneous_adipose_tissue_female_adult_53_years	chr19	9140390	9140428	9140393	+	High_confidence	10	10	49	3.323397	4.981658	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.571429
subcutaneous_adipose_tissue_female_adult_53_years	chr12	53464815	53464842	53464815	+	RAMPAGE_only	3	4	13	0.881718	3.418296	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.923077
subcutaneous_adipose_tissue_female_adult_53_years	chr1	89272843	89272883	89272859	-	High_confidence	21	23	186	12.615345	5.991715	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.946237
subcutaneous_adipose_tissue_female_adult_53_years	chr1	113759887	113759899	113759887	-	High_confidence	3	3	10	0.678244	2.725481	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.600000
subcutaneous_adipose_tissue_female_adult_53_years	chr20	44696111	44696112	44696111	-	High_confidence	35	37	42	2.848626	4.703056	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.738095
subcutaneous_adipose_tissue_female_adult_53_years	chr3	98733157	98733187	98733186	+	High_confidence	3	4	13	0.881718	3.026987	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.769231
subcutaneous_adipose_tissue_female_adult_53_years	chr12	69353531	69353557	69353531	+	RAMPAGE_only	14	17	55	3.730344	4.725667	chr12	69353494	69353787	SINE|Alu|AluY	-	chr12	69348385	69354234	STRG.64151.1	+	69348385,69350107,69352219,69353152,69353518,69353823	69348544,69350272,69352298,69353492,69353800,69354234	0.818182
subcutaneous_adipose_tissue_female_adult_53_years	chr6	159681226	159681274	159681226	-	RAMPAGE_only	4	4	18	1.220840	3.503258	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr19	7642274	7642302	7642301	+	High_confidence	6	6	18	1.220840	3.734522	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.555556
subcutaneous_adipose_tissue_female_adult_53_years	chr14	91462209	91462210	91462209	-	High_confidence	6	6	9	0.610420	2.750000	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.777778
subcutaneous_adipose_tissue_female_adult_53_years	chr14	103931833	103931834	103931833	+	RAMPAGE_only	33	36	48	3.255573	4.900230	chr14	103931646	103932201	LTR|ERVL-MaLR|MLT1E2	+	chr14	103928816	103965481	TDRD9|ENST00000496087.5	+	103928816,103945405,103955663,103963078,103965332	103928923,103945525,103955770,103963176,103965481	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr6	109325708	109325743	109325708	+	High_confidence	27	27	85	5.765077	5.745121	chr6	109324446	109326053	LINE|L2|L2a	-	chr6	109325629	109355046	STRG.36855.3	+	109325629,109329002,109336367,109337395,109338447,109340901,109341301,109342398,109343986,109348426,109354847	109325795,109329112,109336517,109337939,109338615,109341054,109341433,109342551,109344196,109348547,109355046	0.964706
subcutaneous_adipose_tissue_female_adult_53_years	chr7	11253112	11253113	11253112	+	High_confidence	614	621	642	43.543287	7.144581	chr7	11252764	11253207	LTR|ERVL|LTR40b	-	chr7	11253112	11385678	AC004160.1|ENST00000421121.5	+	11253112,11379286,11383796	11253225,11379369,11385678	0.607477
subcutaneous_adipose_tissue_female_adult_53_years	chr8	143281669	143281687	143281686	-	High_confidence	15	16	50	3.391222	4.565533	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.700000
subcutaneous_adipose_tissue_female_adult_53_years	chr6	26957017	26957044	26957017	+	High_confidence	2	3	9	0.610420	2.947703	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26956992	27023924	LINC00240|ENST00000606878.1	+	26956992,26968457,27023253	26957183,26968522,27023924	0.666667
subcutaneous_adipose_tissue_female_adult_53_years	chr9	111284874	111284875	111284874	-	High_confidence	131	134	187	12.683169	5.356187	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111271808	111284865	STRG.52173.1	-	111271808,111284619	111272965,111284865	0.850267
subcutaneous_adipose_tissue_female_adult_53_years	chr7	143237587	143237601	143237600	+	RAMPAGE_only	6	6	17	1.153015	3.734522	chr7	143236245	143238685	LINE|L1|L1MA5	-	chr7	143244092	143265092	GSTK1|ENST00000436038.5	+	143244092,143263147,143264085,143264547,143264991	143244276,143263207,143264167,143264676,143265092	0.647059
subcutaneous_adipose_tissue_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	7	7	8	0.542595	2.807355	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.750000
subcutaneous_adipose_tissue_female_adult_53_years	chrX	120143500	120143501	120143500	+	High_confidence	66	66	70	4.747710	5.093954	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120143517	120146792	STRG.91903.1	+	120143517,120145637	120143900,120146792	0.942857
subcutaneous_adipose_tissue_female_adult_53_years	chr8	143039242	143039267	143039266	+	High_confidence	3	3	8	0.542595	2.521641	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.625000
subcutaneous_adipose_tissue_female_adult_53_years	chr2	182030747	182030774	182030747	+	High_confidence	6	6	20	1.356489	4.037401	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.850000
subcutaneous_adipose_tissue_female_adult_53_years	chr8	65981105	65981120	65981119	+	RAMPAGE_only	24	24	41	2.780802	4.342897	chr8	65980910	65981286	LTR|ERVL-MaLR|THE1B	+	chr8	65979195	66101177	STRG.46453.1	+	65979195,66043487,66051530,66076659,66080376,66099936	65979293,66043611,66051666,66076873,66080548,66101177	0.878049
subcutaneous_adipose_tissue_female_adult_53_years	chr5	151685669	151685698	151685669	-	RAMPAGE_only	2	2	8	0.542595	2.750000	chr5	151685561	151685650	SINE|MIR|MIR3	-	chr5	151666372	151686963	SPARC|ENST00000538026.5	-	151666372,151667466,151669663,151671572,151686901	151666509,151667600,151669784,151671694,151686963	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr13	40350395	40350411	40350410	-	RAMPAGE_only	4	5	14	0.949542	3.392747	chr13	40350403	40350604	SINE|MIR|MIR3	+	chr13	40341524	40344949	STRG.66057.4	-	40341524	40344949	0.642857
subcutaneous_adipose_tissue_female_adult_53_years	chr19	44914362	44914389	44914362	+	High_confidence	3	3	9	0.610420	2.947703	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr5	109952014	109952017	109952016	+	High_confidence	6	11	14	0.949542	3.238901	chr5	109951861	109952212	LTR|ERVL-MaLR|MLT1A0	+	chr5	109952231	109952836	STRG.30868.1	+	109952231	109952836	0.571429
subcutaneous_adipose_tissue_female_adult_53_years	chr7	91311354	91311355	91311354	+	High_confidence	5	6	7	0.474771	2.521641	chr7	91311058	91311602	LTR|ERVL-MaLR|MLT1D	+	chr7	91311367	91335741	AC079760.2|ENST00000449361.5	+	91311367,91312439,91315972,91320801,91333853,91335554	91311386,91312562,91316030,91320987,91333961,91335741	0.571429
subcutaneous_adipose_tissue_female_adult_53_years	chr17	77127872	77127873	77127872	+	High_confidence	11	11	16	1.085191	4.000000	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.687500
subcutaneous_adipose_tissue_female_adult_53_years	chr9	72577235	72577254	72577242	-	High_confidence	56	58	124	8.410230	4.114512	chr9	72577072	72577216	DNA|hAT-Tip100?|MamRep1879	-	chr9	72568626	72577310	STRG.50757.1	-	72568626,72577105	72568822,72577310	0.895161
subcutaneous_adipose_tissue_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	11	11	11	0.746069	2.663533	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr14	38881001	38881017	38881001	-	High_confidence	13	14	24	1.627786	4.084963	chr14	38880649	38881113	LTR|ERVL-MaLR|MLT1F2	-	chr14	38835646	38881065	STRG.68859.1	-	38835646,38880783	38839204,38881065	0.875000
subcutaneous_adipose_tissue_female_adult_53_years	chr17	19386333	19386349	19386333	-	High_confidence	6	10	25	1.695611	3.886842	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.960000
subcutaneous_adipose_tissue_female_adult_53_years	chr9	129698732	129698760	129698737	+	High_confidence	13	14	30	2.034733	4.253236	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129697916	129722674	STRG.53003.2	+	129697916,129719230,129720595,129722216	129698009,129719418,129720774,129722674	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr4	4269605	4269614	4269609	-	High_confidence	17	18	51	3.459046	4.134428	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.823529
subcutaneous_adipose_tissue_female_adult_53_years	chr20	16864154	16864179	16864178	-	High_confidence	8	8	13	0.881718	3.392747	chr20	16864107	16864582	LTR|ERVL-MaLR|MLT1F1	+	chr20	16857961	16864148	AL121892.1|ENST00000422574.1	-	16857961,16859303,16863981	16858494,16859436,16864148	0.846154
subcutaneous_adipose_tissue_female_adult_53_years	chr15	65244454	65244457	65244454	-	High_confidence	28	29	45	3.052100	4.719522	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234299	65244431	STRG.73267.1	-	65234299,65244370	65234823,65244431	0.933333
subcutaneous_adipose_tissue_female_adult_53_years	chrX	5726116	5726325	5726324	-	High_confidence	212	229	569	38.592103	6.432127	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.641476
subcutaneous_adipose_tissue_female_adult_53_years	chr7	106598792	106598811	106598810	-	High_confidence	4	5	11	0.746069	2.921928	chr7	106598614	106598802	LTR|ERVL-MaLR|MLT1J	-	chr7	106569875	106598808	AC005050.1|ENST00000650160.1	-	106569875,106572947,106591549,106598753	106571144,106573160,106591682,106598808	0.545455
subcutaneous_adipose_tissue_female_adult_53_years	chr12	108330113	108330141	108330113	-	RAMPAGE_only	2	2	8	0.542595	2.521641	chr12	108329939	108330453	LTR|ERVL-MaLR|MLT1H	+	chr12	108288043	108339317	CMKLR1|ENST00000312143.11	-	108288043,108293588,108339026	108292959,108293664,108339317	0.625000
subcutaneous_adipose_tissue_female_adult_53_years	chr5	38468481	38468485	38468484	-	High_confidence	4	4	8	0.542595	2.521641	chr5	38468426	38468568	SINE|MIR|MIRc	-	chr5	38466162	38468339	AC010457.1|ENST00000510137.1	-	38466162,38468238	38466398,38468339	0.625000
subcutaneous_adipose_tissue_female_adult_53_years	chr7	134432378	134432424	134432378	-	High_confidence	4	4	22	1.492138	3.921928	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.590909
subcutaneous_adipose_tissue_female_adult_53_years	chr4	170226587	170226588	170226587	+	High_confidence	9	9	9	0.610420	2.725481	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.666667
subcutaneous_adipose_tissue_female_adult_53_years	chr9	113176877	113176902	113176901	-	RAMPAGE_only	6	6	12	0.813893	3.095795	chr9	113176746	113176912	SINE|Alu|AluJr4	-	chr9	113165519	113221279	STRG.52325.1	-	113165519,113165964,113168459,113169223,113170521,113171580,113173452,113174427,113176536,113178629,113182765,113183750,113184291,113184694,113186248,113187792,113188388,113190470,113193491,113194026,113196931,113198854,113199813,113202530,113202960,113206508,113207211,113211476,113221190	113165922,113166155,113168556,113169942,113170629,113171706,113173605,113174583,113176673,113178801,113182868,113183845,113184399,113184804,113186363,113187899,113188491,113190578,113193549,113194169,113197078,113198923,113199963,113202629,113203035,113206578,113207296,113211592,113221279	0.916667
subcutaneous_adipose_tissue_female_adult_53_years	chr8	65979196	65979229	65979196	+	High_confidence	100	104	175	11.869276	5.177922	chr8	65979005	65979377	LTR|ERVL-MaLR|THE1B	+	chr8	65979195	66101177	STRG.46453.1	+	65979195,66043487,66051530,66076659,66080376,66099936	65979293,66043611,66051666,66076873,66080548,66101177	0.931429
subcutaneous_adipose_tissue_female_adult_53_years	chr2	201163926	201163956	201163955	+	RAMPAGE_only	6	8	11	0.746069	2.663533	chr2	201163983	201164293	SINE|Alu|AluSx1	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr4	173369520	173369553	173369533	-	High_confidence	4	5	13	0.881718	3.084963	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.846154
subcutaneous_adipose_tissue_female_adult_53_years	chr3	46606947	46606950	46606949	-	RAMPAGE_only	3	5	8	0.542595	3.000000	chr3	46606755	46606914	LTR|ERVL-MaLR|MLT1L	-	chr3	46518348	46580099	LRRC2|ENST00000296144.3	-	46518348,46521521,46527425,46529904,46532772,46539044,46545045,46551466,46579936	46519063,46521658,46527581,46530050,46532909,46539201,46545253,46551610,46580099	0.750000
subcutaneous_adipose_tissue_female_adult_53_years	chr17	42403553	42403803	42403692	-	RAMPAGE_only	20	20	179	12.140574	6.158300	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr7	11192922	11192978	11192977	+	High_confidence	13	14	25	1.695611	4.142915	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.760000
subcutaneous_adipose_tissue_female_adult_53_years	chr9	72363506	72363574	72363573	-	High_confidence	5	5	33	2.238206	4.542748	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.515152
subcutaneous_adipose_tissue_female_adult_53_years	chr21	36005313	36005320	36005319	+	High_confidence	14	14	24	1.627786	4.088779	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.958333
subcutaneous_adipose_tissue_female_adult_53_years	chr2	159428316	159428357	159428356	-	RAMPAGE_only	11	12	21	1.424313	3.826875	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.761905
subcutaneous_adipose_tissue_female_adult_53_years	chr19	9700673	9700674	9700673	-	High_confidence	101	104	110	7.460688	4.297609	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9689923	9700672	STRG.81818.25	-	9689923,9694778,9696093,9700387	9691269,9694867,9696248,9700672	0.918182
subcutaneous_adipose_tissue_female_adult_53_years	chr8	97150584	97150590	97150584	+	RAMPAGE_only	17	18	38	2.577329	3.782082	chr8	97150395	97150750	LTR|ERVL-MaLR|THE1B	+	chr8	97147408	97158902	STRG.47471.2	+	97147408	97158902	0.789474
subcutaneous_adipose_tissue_female_adult_53_years	chr10	89888929	89888962	89888929	+	High_confidence	51	62	121	8.206757	5.807283	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89888868	89918360	STRG.55520.1	+	89888868,89914635	89889166,89918360	0.661157
subcutaneous_adipose_tissue_female_adult_53_years	chr12	8663177	8663229	8663177	-	High_confidence	10	12	33	2.238206	3.714870	chr12	8663102	8663238	SINE|Alu|AluSq2	-	chr12	8648139	8663301	STRG.61661.2	-	8648139,8649500,8650501,8651661,8654436,8655414,8655785,8660862,8662046,8662626,8663027	8648203,8649574,8650589,8651691,8654481,8655447,8655830,8660898,8662106,8662764,8663301	0.909091
subcutaneous_adipose_tissue_female_adult_53_years	chr12	1059448	1059473	1059448	+	RAMPAGE_only	17	17	34	2.306031	4.653496	chr12	1058934	1060038	LINE|L1|L1P4	-	chr12	1083140	1444589	ERC1|ENST00000538971.6	+	1083140,1104749,1110191,1115865,1141619,1180539,1181924,1183280,1189858,1204500,1236768,1289851,1371832,1408148,1410388,1444561	1083580,1104824,1110347,1116033,1141787,1180677,1182065,1183421,1190052,1204512,1236904,1290012,1371977,1408247,1410453,1444589	0.970588
subcutaneous_adipose_tissue_female_adult_53_years	chr1	176162936	176162937	176162936	-	RAMPAGE_only	7	7	7	0.474771	2.521641	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.714286
subcutaneous_adipose_tissue_female_adult_53_years	chr14	50756973	50756987	50756973	-	RAMPAGE_only	3	3	8	0.542595	2.807355	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.875000
subcutaneous_adipose_tissue_female_adult_53_years	chr10	5651911	5651966	5651965	-	High_confidence	3	3	11	0.746069	2.646439	chr10	5651721	5652025	SINE|Alu|AluJb	+	chr10	5648971	5651568	ASB13|ENST00000482921.1	-	5648971,5651212	5649104,5651568	0.727273
subcutaneous_adipose_tissue_female_adult_53_years	chr1	196404228	196404273	196404272	-	High_confidence	25	34	75	5.086833	5.286458	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225983	196404264	STRG.6199.3	-	196225983,196235985,196258193,196273467,196280859,196282272,196285656,196305233,196315891,196317147,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196228335,196236070,196258494,196273488,196280988,196282356,196285758,196305345,196316026,196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404264	0.813333
subcutaneous_adipose_tissue_female_adult_53_years	chr9	129489073	129489126	129489125	+	High_confidence	6	10	37	2.509504	4.270910	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.918919
subcutaneous_adipose_tissue_female_adult_53_years	chr5	77088061	77088175	77088108	+	High_confidence	106	128	456	30.927942	6.760260	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77148110	STRG.29681.8	+	77088079,77089345,77098654,77100235,77104524,77118319,77147651	77088472,77089403,77098747,77100391,77105689,77118521,77148110	0.890351
subcutaneous_adipose_tissue_female_adult_53_years	chr8	27977125	27977126	27977125	-	High_confidence	64	70	91	6.172024	5.324021	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977114	STRG.45731.3	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977114	0.868132
subcutaneous_adipose_tissue_female_adult_53_years	chrX	16712889	16712959	16712958	-	High_confidence	4	4	23	1.559962	4.095795	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16587998	16712979	CTPS2|NM_019857.4	-	16587998,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712979	0.956522
subcutaneous_adipose_tissue_female_adult_53_years	chr17	70947782	70947811	70947808	-	RAMPAGE_only	11	13	44	2.984275	4.786485	chr17	70947384	70948869	LINE|L1|L1PB1	+	chr17	70778603	70779230	AC007423.1|ENST00000605009.1	-	70778603	70779230	0.772727
subcutaneous_adipose_tissue_female_adult_53_years	chr14	101120839	101120864	101120863	+	High_confidence	2	2	8	0.542595	2.521641	chr14	101120596	101120905	LTR|ERVL-MaLR|MLT1J2	-	chr14	101120855	101123542	LINC02285|ENST00000557121.1	+	101120855,101122888	101121144,101123542	0.875000
subcutaneous_adipose_tissue_female_adult_53_years	chr3	9879101	9879102	9879101	-	High_confidence	5	5	8	0.542595	2.500000	chr3	9879038	9879161	DNA|hAT-Charlie|MER3	+	chr3	9866709	9879056	CIDEC|NM_022094.3	-	9866709,9869881,9870163,9877065,9878433,9878941	9867296,9870069,9870322,9877219,9878511,9879056	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr3	143633971	143634002	143633976	+	High_confidence	5	5	27	1.831260	4.236369	chr3	143633964	143634590	LINE|L1|L1M7	-	chr3	143633987	143657820	STRG.20728.1	+	143633987,143654695,143657586	143634102,143654790,143657820	0.814815
subcutaneous_adipose_tissue_female_adult_53_years	chr16	8644353	8644386	8644385	+	High_confidence	3	3	6	0.406947	2.584963	chr16	8644288	8644447	SINE|MIR|MIRb	+	chr16	8644436	8646222	METTL22|ENST00000569597.1	+	8644436,8646107	8644725,8646222	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr5	135730392	135730393	135730392	+	RAMPAGE_only	12	12	12	0.813893	3.022055	chr5	135730211	135730571	LTR|ERVL-MaLR|THE1B	+	chr5	135812666	135826582	AC114296.1|ENST00000506592.1	+	135812666,135826465	135812926,135826582	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr9	89479889	89479890	89479889	-	High_confidence	29	29	32	2.170382	4.155639	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr1	243730544	243730561	243730544	-	RAMPAGE_only	2	2	8	0.542595	3.000000	chr1	243729964	243731137	LTR|ERV1|LTR2752	+	chr1	243664771	243814682	AKT3|ENST00000463991.5	-	243664771,243695590,243814498	243664883,243695716,243814682	0.625000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	9065161	9065174	9065173	+	High_confidence	6	7	10	0.678244	3.169925	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.600000
subcutaneous_adipose_tissue_female_adult_53_years	chr1	174874418	174874439	174874418	+	RAMPAGE_only	7	7	27	1.831260	4.392747	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174700730	174990341	RABGAP1L|ENST00000469553.6	+	174700730,174702112,174752312,174811831,174877391,174957456,174957890,174969276,174976077,174978806,174982833,174988640,174989848	174700865,174702256,174752354,174811960,174877605,174957549,174958173,174969387,174976182,174978890,174982905,174988838,174990341	0.740741
subcutaneous_adipose_tissue_female_adult_53_years	chr22	17726688	17726755	17726713	+	RAMPAGE_only	5	6	25	1.695611	3.969002	chr22	17726672	17726726	SINE|5S-Deu-L2|AmnSINE1	-	chr22	17706709	17727670	BCL2L13|ENST00000485631.1	+	17706709,17726676	17706825,17727670	0.840000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	8788252	8788253	8788252	+	High_confidence	7	7	10	0.678244	2.725481	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.900000
subcutaneous_adipose_tissue_female_adult_53_years	chr2	200889261	200889318	200889293	-	High_confidence	10	10	31	2.102557	4.235981	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.709677
subcutaneous_adipose_tissue_female_adult_53_years	chr10	102727679	102727697	102727679	+	RAMPAGE_only	2	2	10	0.678244	2.947703	chr10	102727660	102728003	LINE|L2|L2c	-	chr10	102714635	102739189	SFXN2|ENST00000459894.6	+	102714635,102724935,102726611,102726986,102728430,102729722,102732858,102733553,102735861,102737662	102714681,102724996,102726797,102727157,102728529,102729808,102732908,102733603,102735909,102739189	0.600000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	26832788	26832801	26832797	-	High_confidence	2	2	7	0.474771	2.584963	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26716161	26832786	ITPR2|ENST00000545235.1	-	26716161,26722396,26724655,26725649,26832689	26716242,26722555,26724742,26725765,26832786	0.714286
subcutaneous_adipose_tissue_female_adult_53_years	chr14	102235398	102235417	102235416	-	High_confidence	3	3	9	0.610420	2.750000	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102226139	102235424	MOK|ENST00000561150.5	-	102226139,102232534,102233687,102235364	102226408,102232671,102233789,102235424	0.777778
subcutaneous_adipose_tissue_female_adult_53_years	chr17	15475693	15475733	15475732	-	High_confidence	5	5	11	0.746069	2.921928	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15437858	15475728	CDRT4|ENST00000520956.2	-	15437858,15475600	15438200,15475728	0.727273
subcutaneous_adipose_tissue_female_adult_53_years	chr7	40547009	40547019	40547018	-	High_confidence	12	13	22	1.492138	4.277613	chr7	40546944	40547406	LTR|ERVL|MLT2B4	-	chr7	40538126	40546928	AC004988.1|ENST00000415237.1	-	40538126,40546713	40539682,40546928	0.772727
subcutaneous_adipose_tissue_female_adult_53_years	chr14	102235458	102235481	102235458	-	High_confidence	14	14	48	3.255573	4.436257	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.916667
subcutaneous_adipose_tissue_female_adult_53_years	chr9	20658585	20658624	20658607	+	High_confidence	6	7	20	1.356489	2.801609	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.700000
subcutaneous_adipose_tissue_female_adult_53_years	chr7	603495	603543	603542	+	High_confidence	18	20	125	8.478054	6.132673	chr7	603435	603558	LINE|L2|L2c	+	chr7	603397	608502	LOC101926963|NR_110055.1	+	603397,607864	603616,608502	0.984000
subcutaneous_adipose_tissue_female_adult_53_years	chr6	144533105	144533148	144533105	+	RAMPAGE_only	3	3	12	0.813893	2.792481	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr5	157107316	157107337	157107316	-	High_confidence	17	18	34	2.306031	4.499228	chr5	157107099	157107287	DNA|hAT-Charlie|MER5A	-	chr5	157106653	157107302	HAVCR2|ENST00000517358.1	-	157106653,157107045	157106962,157107302	0.529412
subcutaneous_adipose_tissue_female_adult_53_years	chr17	2667148	2667196	2667195	+	High_confidence	19	19	30	2.034733	4.017825	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.866667
subcutaneous_adipose_tissue_female_adult_53_years	chr18	50843101	50843104	50843101	-	RAMPAGE_only	7	7	12	0.813893	3.584963	chr18	50842925	50843332	LTR|ERVL|MLT2D	-	chr18	50798376	50825402	MRO|ENST00000428869.6	-	50798376,50800035,50801348,50805153,50806703,50809301,50816123,50819580,50825308	50799390,50800143,50801504,50805336,50806850,50809404,50816162,50819702,50825402	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	7502477	7502523	7502503	-	High_confidence	31	43	184	12.479696	6.334885	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.983696
subcutaneous_adipose_tissue_female_adult_53_years	chr5	42837876	42837882	42837881	+	High_confidence	7	8	19	1.288664	3.932138	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42837203	42839950	STRG.28635.1	+	42837203,42839045	42838037,42839950	0.526316
subcutaneous_adipose_tissue_female_adult_53_years	chr11	90251203	90251205	90251204	+	High_confidence	8	14	14	0.949542	3.521641	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.642857
subcutaneous_adipose_tissue_female_adult_53_years	chr21	28799285	28799286	28799285	-	RAMPAGE_only	8	9	9	0.610420	2.750000	chr21	28799122	28799481	LTR|ERVL-MaLR|THE1B	-	chr21	28439345	28805144	STRG.87121.7	-	28439345,28577218,28626584,28771993,28803936	28446472,28577380,28626676,28772138,28805144	0.666667
subcutaneous_adipose_tissue_female_adult_53_years	chr13	101529738	101529796	101529738	+	RAMPAGE_only	10	10	36	2.441680	4.551462	chr13	101529576	101529918	LTR|ERVL-MaLR|THE1C	+	chr13	101489951	101716446	ITGBL1|NM_001271756.1	+	101489951,101567698,101575423,101579286,101583215,101598152,101692584,101706755,101714437,101715562	101490000,101567845,101575546,101579427,101583356,101598299,101692701,101706902,101714551,101716446	0.805556
subcutaneous_adipose_tissue_female_adult_53_years	chr6	161189868	161189872	161189868	-	High_confidence	6	6	12	0.813893	3.251629	chr6	161189857	161190030	DNA|TcMar-Tc2|MER104	+	chr6	161187801	161190216	STRG.39181.8	-	161187801	161190216	0.583333
subcutaneous_adipose_tissue_female_adult_53_years	chr5	150118788	150118853	150118788	-	RAMPAGE_only	3	3	20	1.356489	3.787144	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.950000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	16259148	16259149	16259148	+	High_confidence	10	10	12	0.813893	3.277613	chr12	16259051	16259251	SINE|Alu|AluJb	-	chr12	16259145	16266703	STRG.62363.1	+	16259145,16262093	16259195,16266703	0.583333
subcutaneous_adipose_tissue_female_adult_53_years	chr10	78977917	78977973	78977923	-	RAMPAGE_only	21	22	67	4.544237	5.578411	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78962394	ZMIZ1-AS1|ENST00000428862.5	-	78943327,78945911,78960504,78961253	78944747,78945989,78960716,78962394	0.567164
subcutaneous_adipose_tissue_female_adult_53_years	chr1	166850316	166850330	166850329	+	RAMPAGE_only	3	3	7	0.474771	2.521641	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr8	2726956	2726963	2726962	+	High_confidence	13	13	21	1.424313	3.826875	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2726981	2804720	STRG.44776.1	+	2726981,2804585	2727493,2804720	0.904762
subcutaneous_adipose_tissue_female_adult_53_years	chr19	17556545	17556556	17556555	+	High_confidence	4	6	10	0.678244	2.947703	chr19	17556574	17556631	SINE|MIR|MIR	+	chr19	17556560	17568577	COLGALT1|ENST00000600474.1	+	17556560,17559310,17560347,17567405,17568508	17556679,17559421,17560465,17567540,17568577	0.800000
subcutaneous_adipose_tissue_female_adult_53_years	chr11	86955969	86955989	86955969	-	High_confidence	6	6	21	1.424313	4.121928	chr11	86955862	86955972	SINE|MIR|MIRb	+	chr11	86945674	86955398	FZD4|NM_012193.3	-	86945674,86954800	86952470,86955398	0.523810
subcutaneous_adipose_tissue_female_adult_53_years	chr1	94679730	94679731	94679730	-	RAMPAGE_only	8	10	12	0.813893	3.022055	chr1	94679690	94679798	SINE|MIR|MIR3	+	chr1	94672896	94732345	SLC44A3-AS1|ENST00000432162.5	-	94672896,94679424,94732257	94673271,94679607,94732345	0.583333
subcutaneous_adipose_tissue_female_adult_53_years	chr1	33021381	33021417	33021381	-	RAMPAGE_only	3	3	14	0.949542	2.842371	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr16	68267936	68267937	68267936	+	RAMPAGE_only	12	12	12	0.813893	2.751629	chr16	68267617	68268452	LTR|ERVL|MER21B	+	chr16	68266601	68297433	STRG.76089.4	+	68266601,68273817,68274690,68287745,68290395,68291208,68291557,68294704,68296363,68296626,68297233	68266721,68273904,68275249,68287871,68290540,68291332,68291661,68294801,68296513,68296810,68297433	0.833333
subcutaneous_adipose_tissue_female_adult_53_years	chr3	28347630	28347654	28347653	-	High_confidence	22	22	48	3.255573	5.240655	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.541667
subcutaneous_adipose_tissue_female_adult_53_years	chr3	45034830	45034841	45034840	+	RAMPAGE_only	21	22	50	3.391222	4.970176	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	0.960000
subcutaneous_adipose_tissue_female_adult_53_years	chr9	125337360	125337369	125337368	+	RAMPAGE_only	4	4	8	0.542595	2.521641	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125302209	125363025	STRG.52800.6	+	125302209,125305062,125307412,125307690,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176,125342218,125346818,125349389,125350294,125350712,125354653,125355643,125359419,125360527,125362605	125302826,125305149,125307547,125307880,125312612,125321562,125323923,125326589,125330218,125332060,125332629,125337095,125337591,125341264,125342299,125346941,125349519,125350404,125350872,125354841,125355857,125359492,125360725,125363025	0.875000
subcutaneous_adipose_tissue_female_adult_53_years	chr16	75222419	75222423	75222422	+	RAMPAGE_only	3	3	7	0.474771	2.807355	chr16	75222363	75222517	SINE|MIR|MIR	-	chr16	75218999	75224924	CTRB1|ENST00000361017.8	+	75218999,75222767,75222968,75223140,75223447,75224054,75224704	75219059,75222871,75223048,75223219,75223628,75224188,75224924	0.714286
subcutaneous_adipose_tissue_female_adult_53_years	chr1	182792245	182792286	182792285	+	High_confidence	4	4	16	1.085191	3.506891	chr1	182792127	182792348	SINE|MIR|MIR	-	chr1	182792258	182830132	NPL|ENST00000367553.5	+	182792258,182794355,182803697,182806144,182812155,182814782,182816713,182818540,182818812,182822114,182825780,182828723	182792286,182794439,182803771,182806232,182812213,182814858,182816806,182818689,182818859,182822199,182825820,182830132	0.750000
subcutaneous_adipose_tissue_female_adult_53_years	chr1	242001524	242001589	242001562	-	High_confidence	16	16	80	5.425955	5.339576	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	242001581	STRG.7546.1	-	241995489,241998513,241998775,241998950,242001308	241996385,241998620,241998831,241999026,242001581	0.900000
subcutaneous_adipose_tissue_female_adult_53_years	chr6	82095298	82095312	82095311	-	RAMPAGE_only	11	11	28	1.899084	3.986188	chr6	82095126	82095506	LTR|ERVL-MaLR|THE1C	-	chr6	81845184	81933480	LINC02542|ENST00000418567.1	-	81845184,81928856,81933428	81845909,81928901,81933480	0.571429
subcutaneous_adipose_tissue_female_adult_53_years	chr9	94639793	94639794	94639793	-	High_confidence	10	10	14	0.949542	3.392747	chr9	94639786	94639936	SINE|MIR|MIR	-	chr9	94603132	94639641	FBP1|NM_000507.3	-	94603132,94605456,94606814,94609920,94617767,94620328,94639140	94603572,94605576,94606952,94610061,94617860,94620491,94639641	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr9	18702070	18702071	18702070	-	High_confidence	17	18	22	1.492138	4.004886	chr9	18701896	18702263	LTR|ERVL-MaLR|THE1B	-	chr9	18657180	18702058	STRG.49479.1	-	18657180,18694347,18701979	18657739,18694419,18702058	0.636364
subcutaneous_adipose_tissue_female_adult_53_years	chr9	77822994	77823013	77822994	-	RAMPAGE_only	8	8	19	1.288664	2.584262	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77797527	78030604	GNAQ|ENST00000411677.1	-	77797527,77815615,77922160,78030514	77797648,77815770,77922345,78030604	0.842105
subcutaneous_adipose_tissue_female_adult_53_years	chr9	114394398	114394413	114394398	-	High_confidence	9	9	15	1.017367	3.093069	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	0.933333
subcutaneous_adipose_tissue_female_adult_53_years	chr19	17336685	17336727	17336685	+	High_confidence	13	15	41	2.780802	4.491460	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.682927
subcutaneous_adipose_tissue_female_adult_53_years	chr12	51404113	51404140	51404113	+	High_confidence	6	6	23	1.559962	4.142915	chr12	51404013	51404316	LTR|Gypsy|MamGyp-int	+	chr12	51403162	51497864	SLC4A8|ENST00000604314.5	+	51403162,51440707,51450875,51452123,51453538,51457350,51458558,51459950,51461203,51462309,51463613,51469613,51470391,51471286,51474341,51475044,51485786,51488698,51489699,51493703,51494944,51496986	51403289,51440789,51451022,51452259,51453699,51457539,51458650,51460108,51461291,51462456,51463714,51469788,51470525,51471532,51474447,51475206,51485900,51488860,51489951,51493772,51495118,51497864	0.782609
subcutaneous_adipose_tissue_female_adult_53_years	chr1	166850123	166850125	166850124	+	RAMPAGE_only	8	11	13	0.881718	3.546594	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr19	18938355	18938383	18938382	-	High_confidence	4	4	8	0.542595	2.521641	chr19	18938201	18938361	SINE|MIR|MIR3	-	chr19	18929438	18938982	HOMER3|ENST00000594439.5	-	18929438,18931324,18931508,18931975,18932923,18938352,18938727,18938968	18929634,18931411,18931625,18932132,18933045,18938484,18938884,18938982	0.875000
subcutaneous_adipose_tissue_female_adult_53_years	chr1	161189513	161189520	161189516	+	High_confidence	21	41	95	6.443321	5.861601	chr1	161189498	161189600	LINE|L2|L2b	+	chr1	161189463	161193864	STRG.5045.1	+	161189463,161192016	161189704,161193864	0.515789
subcutaneous_adipose_tissue_female_adult_53_years	chr16	53445780	53445794	53445780	+	High_confidence	6	6	13	0.881718	3.180833	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.769231
subcutaneous_adipose_tissue_female_adult_53_years	chr5	173714962	173714964	173714962	-	High_confidence	22	35	44	2.984275	4.881704	chr5	173714669	173715152	LINE|L2|L2	+	chr5	173707968	173714952	STRG.33062.1	-	173707968,173714825	173711948,173714952	0.590909
subcutaneous_adipose_tissue_female_adult_53_years	chr2	62665915	62665934	62665915	+	RAMPAGE_only	4	5	13	0.881718	3.188722	chr2	62665798	62665964	SINE|MIR|MIRb	-	chr2	62673850	63046487	EHBP1|NM_001142615.2	+	62673850,62706896,62747394,62764265,62771338,62826086,62831018,62859168,62864730,62874345,62942717,62943801,62948259,62955516,62979187,62990715,62993529,62993870,62996642,63037534,63038742,63045065,63045409	62674083,62707295,62747452,62764361,62771392,62826268,62831158,62859291,62864971,62874532,62942896,62943850,62949162,62955660,62979335,62990840,62993668,62993977,62996766,63037634,63038816,63045180,63046487	0.615385
subcutaneous_adipose_tissue_female_adult_53_years	chr17	59620042	59620052	59620043	+	High_confidence	13	25	54	3.662519	4.935172	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.925926
subcutaneous_adipose_tissue_female_adult_53_years	chr13	48446737	48446738	48446737	+	RAMPAGE_only	10	10	12	0.813893	3.095795	chr13	48446345	48447306	LINE|L2|L2a	-	chr13	48303746	48481890	RB1|NM_000321.2	+	48303746,48307279,48342598,48345079,48347824,48348955,48360016,48362814,48364893,48367493,48368526,48373404,48376917,48379593,48380052,48380164,48381246,48452992,48456203,48459687,48463730,48464997,48465204,48473359,48476700,48477354,48479997	48304049,48307406,48342714,48345199,48347863,48349023,48360127,48362957,48364971,48367603,48368604,48373492,48377034,48379650,48380084,48380241,48381443,48453111,48456349,48459833,48463835,48465111,48465368,48473390,48476843,48477404,48481890	0.666667
subcutaneous_adipose_tissue_female_adult_53_years	chr10	79435765	79435782	79435781	-	RAMPAGE_only	5	5	15	1.017367	3.506891	chr10	79435626	79435755	SINE|MIR|MIR3	-	chr10	79386036	79444219	ZCCHC24|ENST00000372333.3	-	79386036,79394275,79432557,79444101	79386458,79394440,79432758,79444219	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr2	207662411	207662425	207662411	+	High_confidence	2	2	11	0.746069	3.277613	chr2	207662277	207662604	LTR|ERVL-MaLR|MLT1A1	+	chr2	207662429	207667024	LOC102724714|NR_135567.1	+	207662429,207666680	207662522,207667024	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr3	138601953	138601964	138601953	+	RAMPAGE_only	4	4	9	0.610420	3.169925	chr3	138601717	138602070	LTR|ERVL-MaLR|THE1A	+	chr3	138608605	138631139	FAIM|ENST00000470889.5	+	138608605,138610603,138621406,138622187,138629106	138608937,138611037,138621539,138622416,138631139	0.555556
subcutaneous_adipose_tissue_female_adult_53_years	chr1	183590905	183590926	183590910	-	High_confidence	35	35	99	6.714619	5.902726	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.929293
subcutaneous_adipose_tissue_female_adult_53_years	chr6	36540276	36540277	36540276	-	RAMPAGE_only	7	7	9	0.610420	2.947703	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36541359	STRG.34607.4	-	36493891,36496710,36497779,36498362,36506582,36507499,36515337,36521733,36524340,36525590,36540071	36495914,36496805,36497875,36499990,36506644,36507602,36517840,36521817,36524463,36525642,36541359	0.666667
subcutaneous_adipose_tissue_female_adult_53_years	chr14	81170372	81170414	81170392	-	High_confidence	11	14	53	3.594695	4.928590	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.905660
subcutaneous_adipose_tissue_female_adult_53_years	chr6	73729136	73729150	73729149	+	RAMPAGE_only	3	3	11	0.746069	3.321928	chr6	73728830	73729330	LTR|ERVL-MaLR|MLT1F1	-	chr6	73722940	73810172	CD109|ENST00000649530.1	+	73722940,73723250,73730343,73736382,73756642,73758943,73762383,73762740,73763575,73765929,73766758,73766947,73768054,73771428,73780423,73781258,73782613,73783706,73785363,73787233,73788467,73792625,73803219,73806843,73808082,73809983	73723159,73723279,73730574,73736508,73756682,73759028,73762480,73762882,73763685,73766154,73766860,73767010,73768231,73771581,73780498,73781319,73782755,73783824,73785477,73787452,73788612,73792802,73803301,73807072,73808248,73810172	0.818182
subcutaneous_adipose_tissue_female_adult_53_years	chr18	7946878	7946898	7946878	+	High_confidence	20	20	70	4.747710	5.084720	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr2	240022172	240022219	240022172	-	RAMPAGE_only	6	6	31	2.102557	3.186648	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr7	128903324	128903362	128903338	-	High_confidence	13	14	46	3.119924	4.865635	chr7	128903088	128903463	LINE|L2|L2b	+	chr7	128889946	128903352	KCP|ENST00000616669.4	-	128889946,128890904,128891184,128891450,128891645,128892513,128892687,128892868,128893237,128893390,128893805,128894199,128902776,128903163	128890513,128891096,128891278,128891533,128891819,128892607,128892794,128893021,128893319,128893476,128894055,128894293,128902859,128903352	0.978261
subcutaneous_adipose_tissue_female_adult_53_years	chr6	137218787	137218822	137218821	-	High_confidence	5	5	16	1.085191	3.506891	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.937500
subcutaneous_adipose_tissue_female_adult_53_years	chr14	101731413	101731422	101731413	+	High_confidence	11	11	22	1.492138	3.684184	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.863636
subcutaneous_adipose_tissue_female_adult_53_years	chr5	180831568	180831621	180831568	-	High_confidence	20	20	155	10.512787	5.520909	chr5	180831415	180831530	SINE|Alu|AluSq2	-	chr5	180829953	180831605	HEIH|ENST00000623091.1	-	180829953	180831605	0.993548
subcutaneous_adipose_tissue_female_adult_53_years	chr9	125650422	125650430	125650426	-	High_confidence	3	3	9	0.610420	2.750000	chr9	125649959	125650542	LINE|L2|L2b	+	chr9	125444500	125650417	MAPKAP1|ENST00000420643.5	-	125444500,125467971,125484442,125543058,125559632,125585554,125599834,125650363	125444598,125468109,125484583,125543168,125559809,125585727,125599927,125650417	0.555556
subcutaneous_adipose_tissue_female_adult_53_years	chr4	119217548	119217599	119217598	+	RAMPAGE_only	4	4	14	0.949542	3.238901	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212742	119294638	STRG.25948.4	+	119212742,119214069,119217549,119235289,119239217,119248747,119256245,119256440,119259819,119260506,119268267,119271295,119273631,119291164,119292337	119212873,119214222,119217673,119235411,119245429,119248882,119256359,119256523,119259925,119267482,119269837,119272034,119273708,119291261,119294638	0.714286
subcutaneous_adipose_tissue_female_adult_53_years	chr19	40280802	40280811	40280810	-	High_confidence	5	6	12	0.813893	3.022055	chr19	40280545	40281038	LINE|L2|L2a	+	chr19	40242039	40280832	AKT2|ENST00000486368.6	-	40242039,40242533,40255157,40256925,40265221,40280781	40242069,40242687,40255269,40257054,40265351,40280832	0.833333
subcutaneous_adipose_tissue_female_adult_53_years	chr6	125828183	125828228	125828227	+	RAMPAGE_only	26	28	75	5.086833	5.383059	chr6	125828208	125828418	LINE|L2|L2-3_Crp	-	chr6	125815217	125874968	NCOA7|ENST00000419660.1	+	125815217,125855019,125874888	125815404,125855240,125874968	0.893333
subcutaneous_adipose_tissue_female_adult_53_years	chr13	110463286	110463287	110463286	-	High_confidence	111	122	127	8.613703	5.930286	chr13	110463036	110463464	LTR|ERVL-MaLR|MLT1C	-	chr13	110459572	110463271	STRG.68108.2	-	110459572	110463271	0.913386
subcutaneous_adipose_tissue_female_adult_53_years	chr20	3795750	3795789	3795750	+	High_confidence	17	19	66	4.476413	5.145144	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.984848
subcutaneous_adipose_tissue_female_adult_53_years	chr2	171231287	171231296	171231295	-	High_confidence	20	21	45	3.052100	4.609534	chr2	171231092	171231479	LTR|ERVL-MaLR|MLT1C	-	chr2	170990822	171231314	TLK1|NM_001136554.1	-	170990822,170996652,170997711,171006146,171006473,171006799,171006971,171011372,171014850,171028338,171046173,171049813,171050063,171053760,171055082,171056470,171058150,171061080,171082780,171117738,171231144	170993956,170996760,170997823,171006282,171006643,171006889,171007063,171011454,171014948,171028405,171046362,171049950,171050174,171053853,171055172,171056566,171058197,171061156,171082852,171117857,171231314	0.866667
subcutaneous_adipose_tissue_female_adult_53_years	chr5	73078286	73078289	73078288	+	RAMPAGE_only	4	9	12	0.813893	3.277613	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.916667
subcutaneous_adipose_tissue_female_adult_53_years	chrX	100593594	100593640	100593611	+	High_confidence	4	5	15	1.017367	3.235926	chrX	100593595	100593649	LINE|CR1|L3	+	chrX	100593623	100597531	TNMD|ENST00000485971.1	+	100593623,100594260,100597503	100594035,100594362,100597531	0.800000
subcutaneous_adipose_tissue_female_adult_53_years	chr4	48805159	48805165	48805159	+	High_confidence	7	7	18	1.220840	3.499228	chr4	48805071	48805471	LTR|ERVL-MaLR|MLT1F	+	chr4	48805211	48850036	OCIAD1|ENST00000504654.5	+	48805211,48830576,48832619,48833400,48842635,48848398,48849946	48805330,48830673,48832682,48833481,48842689,48848446,48850036	0.777778
subcutaneous_adipose_tissue_female_adult_53_years	chr3	129486648	129486649	129486648	+	High_confidence	5	7	8	0.542595	2.521641	chr3	129486534	129486712	LINE|L2|L2c	-	chr3	129487505	129520355	IFT122|ENST00000511425.5	+	129487505,129488256,129492140,129499901,129502710,129504318,129506408,129507667,129512311,129514388,129515487,129517468,129519106,129519567,129520175	129487927,129488397,129492194,129500068,129502882,129504421,129506549,129507762,129512412,129514554,129515599,129517594,129519186,129519732,129520355	0.750000
subcutaneous_adipose_tissue_female_adult_53_years	chr16	22573100	22573123	22573105	+	High_confidence	4	4	12	0.813893	2.913977	chr16	22572742	22573173	DNA|hAT-Charlie|MER113	+	chr16	22572887	22576871	STRG.75392.1	+	22572887,22576611	22573417,22576871	0.916667
subcutaneous_adipose_tissue_female_adult_53_years	chr17	82081606	82081706	82081613	-	High_confidence	8	8	57	3.865993	4.874483	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.543860
subcutaneous_adipose_tissue_female_adult_53_years	chr11	65440281	65440405	65440332	+	RAMPAGE_only	18	23	130	8.817176	5.661275	chr11	65440323	65440484	SINE|Alu|AluJo	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr19	54572987	54573002	54573001	+	High_confidence	14	14	23	1.559962	4.186704	chr19	54572997	54573273	SINE|Alu|AluJr	-	chr19	54572996	54587560	LILRA2|NM_006866.3	+	54572996,54573697,54574075,54574300,54574730,54575255,54575806,54587200	54573435,54573912,54574111,54574582,54575033,54575552,54576109,54587560	0.956522
subcutaneous_adipose_tissue_female_adult_53_years	chr5	109383448	109383495	109383459	-	High_confidence	4	4	15	1.017367	3.235926	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.933333
subcutaneous_adipose_tissue_female_adult_53_years	chr2	191683298	191683319	191683298	+	RAMPAGE_only	2	2	7	0.474771	2.584963	chr2	191683258	191683377	SINE|tRNA-RTE|MamSINE1	+	chr2	191678989	191685894	STRG.14267.15	+	191678989,191681945,191682491,191684229	191679128,191682017,191683804,191685894	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr11	64226142	64226180	64226142	-	High_confidence	54	54	257	17.430880	6.658118	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64224758	64226141	TRPT1|ENST00000542040.1	-	64224758,64226049	64225580,64226141	0.525292
subcutaneous_adipose_tissue_female_adult_53_years	chr13	110314105	110314109	110314108	-	High_confidence	4	5	11	0.746069	2.732159	chr13	110314011	110314270	LINE|L1|L1MD3	+	chr13	110312625	110314094	STRG.68106.1	-	110312625,110313872	110313338,110314094	0.909091
subcutaneous_adipose_tissue_female_adult_53_years	chr17	64431593	64431594	64431593	-	RAMPAGE_only	7	7	9	0.610420	2.947703	chr17	64431443	64432048	LTR|ERV1|MER41B	-	chr17	64375050	64413776	PECAM1|ENST00000564866.5	-	64375050,64377823,64390488,64390601,64413713	64375356,64378117,64390515,64390763,64413776	0.555556
subcutaneous_adipose_tissue_female_adult_53_years	chr5	151157941	151157996	151157986	-	High_confidence	3	3	17	1.153015	3.454822	chr5	151157893	151158048	SINE|MIR|MIR3	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr7	155243663	155243684	155243683	-	RAMPAGE_only	10	10	19	1.288664	4.058814	chr7	155240897	155243674	LTR|ERVK|HERVK9-int	-	chr7	155238268	155252525	STRG.44619.3	-	155238268,155239490,155252292	155238833,155243716,155252525	0.947368
subcutaneous_adipose_tissue_female_adult_53_years	chr15	88635617	88635661	88635654	+	High_confidence	7	7	24	1.627786	4.220176	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.750000
subcutaneous_adipose_tissue_female_adult_53_years	chr22	31290200	31290226	31290200	-	High_confidence	3	3	10	0.678244	3.321928	chr22	31290108	31290412	SINE|Alu|AluSx	+	chr22	31281678	31290726	PIK3IP1|ENST00000493034.1	-	31281678,31289314,31289498,31289932	31283288,31289393,31289699,31290726	0.900000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	15764158	15764159	15764158	-	RAMPAGE_only	27	28	38	2.577329	4.734512	chr12	15763995	15764357	LTR|ERVL-MaLR|THE1B	-	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.684211
subcutaneous_adipose_tissue_female_adult_53_years	chr12	70468079	70468084	70468079	+	High_confidence	7	9	13	0.881718	3.085055	chr12	70467961	70468294	LTR|ERV1|MER61A	+	chr12	70468122	70520839	AC025569.1|ENST00000549616.5	+	70468122,70507894,70510211,70513184,70520198,70520785	70468327,70508001,70510284,70513227,70520267,70520839	0.538462
subcutaneous_adipose_tissue_female_adult_53_years	chr15	45631147	45631148	45631147	+	High_confidence	11	12	14	0.949542	3.334679	chr15	45630952	45631306	LTR|ERVL-MaLR|THE1A	+	chr15	45631147	45691280	SQOR|ENST00000568606.5	+	45631147,45631926,45658906,45661954,45669927,45673606,45676100,45682477,45688336,45689038,45690972	45631230,45632015,45659157,45662125,45669981,45673801,45676310,45682661,45688404,45689217,45691280	0.928571
subcutaneous_adipose_tissue_female_adult_53_years	chr9	19126407	19126436	19126423	-	RAMPAGE_only	10	12	57	3.865993	5.117892	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19115769	19127475	STRG.49504.5	-	19115769,19118320,19119649,19120879,19123564,19126396,19127418	19116649,19118455,19119831,19121165,19126309,19126448,19127475	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr9	35644579	35644588	35644587	-	RAMPAGE_only	4	4	9	0.610420	3.000000	chr9	35644437	35644668	LINE|CR1|L3	+	chr9	35609532	35619542	CD72|ENST00000396757.5	-	35609532,35610601,35611803,35612847,35615942,35616599,35617175,35618013,35618221,35619511	35610300,35610753,35611919,35612993,35616278,35616689,35617247,35618121,35618437,35619542	0.777778
subcutaneous_adipose_tissue_female_adult_53_years	chr3	14047185	14047226	14047205	-	High_confidence	11	13	37	2.509504	4.286147	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14038574	14047210	STRG.16782.1	-	14038574,14046812	14041628,14047210	0.837838
subcutaneous_adipose_tissue_female_adult_53_years	chr14	50756925	50756943	50756942	-	RAMPAGE_only	3	4	7	0.474771	2.584963	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr3	58526765	58526766	58526765	-	High_confidence	11	11	12	0.813893	2.913977	chr3	58526754	58526856	SINE|MIR|MIRb	-	chr3	58505135	58526749	ACOX2|ENST00000467738.1	-	58505135,58508892,58517205,58522495,58524425,58526465	58505286,58509025,58517423,58522601,58524605,58526749	0.916667
subcutaneous_adipose_tissue_female_adult_53_years	chr8	57746128	57746129	57746128	+	High_confidence	9	9	9	0.610420	2.947703	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.888889
subcutaneous_adipose_tissue_female_adult_53_years	chr8	53523963	53523987	53523963	-	High_confidence	2	2	9	0.610420	2.947703	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr18	23149808	23149809	23149808	+	RAMPAGE_only	19	19	26	1.763435	3.603856	chr18	23149657	23149836	DNA|hAT-Charlie|MER5A	+	chr18	23155824	23260470	CABLES1|NM_138375.2	+	23155824,23188837,23194447,23213976,23234607,23235894,23237141,23252959,23253728,23257226	23155952,23188909,23194540,23214054,23234704,23236051,23237245,23253066,23253936,23260470	0.730769
subcutaneous_adipose_tissue_female_adult_53_years	chr12	8681599	8681600	8681599	+	High_confidence	7	7	11	0.746069	3.277613	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.909091
subcutaneous_adipose_tissue_female_adult_53_years	chr7	154928480	154928504	154928503	+	High_confidence	25	25	45	3.052100	4.880525	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr9	39810033	39810099	39810033	-	High_confidence	6	6	26	1.763435	4.315824	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803465	39810013	STRG.50046.4	-	39803465,39809485	39803859,39810013	0.884615
subcutaneous_adipose_tissue_female_adult_53_years	chr7	11193340	11193367	11193340	+	High_confidence	15	20	48	3.255573	4.871115	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.708333
subcutaneous_adipose_tissue_female_adult_53_years	chr2	232816731	232816752	232816751	+	RAMPAGE_only	3	3	9	0.610420	3.000000	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.777778
subcutaneous_adipose_tissue_female_adult_53_years	chr7	158863388	158863402	158863401	+	RAMPAGE_only	4	6	11	0.746069	3.321928	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.818182
subcutaneous_adipose_tissue_female_adult_53_years	chr15	97521615	97521631	97521630	-	High_confidence	30	31	46	3.119924	4.863749	chr15	97521399	97521640	SINE|tRNA|LFSINE_Vert	+	chr15	97370370	97521811	LINC02254|ENST00000558621.2	-	97370370,97397656,97427650,97515286,97521580	97371341,97397740,97427952,97515424,97521811	0.739130
subcutaneous_adipose_tissue_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	38	38	40	2.712977	3.967111	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.925000
subcutaneous_adipose_tissue_female_adult_53_years	chr8	124673341	124673384	124673383	-	High_confidence	15	22	52	3.526871	3.975002	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.942308
subcutaneous_adipose_tissue_female_adult_53_years	chr4	86453177	86453207	86453195	-	High_confidence	6	9	38	2.577329	4.537845	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016074	86453196	MAPK10|ENST00000641854.1	-	86016074,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86107352,86159467,86194407,86354644,86453196	0.789474
subcutaneous_adipose_tissue_female_adult_53_years	chr1	205512316	205512317	205512316	+	RAMPAGE_only	10	11	15	1.017367	3.664498	chr1	205512088	205512401	LINE|L2|L2	-	chr1	205504801	205527825	CDK18|ENST00000419301.1	+	205504801,205523146,205523482,205524231,205525138,205526064,205526366,205526774,205527793	205504878,205523297,205523715,205524357,205525195,205526179,205526461,205526837,205527825	0.733333
subcutaneous_adipose_tissue_female_adult_53_years	chr1	154975524	154975546	154975524	+	High_confidence	8	8	14	0.949542	2.931209	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr4	38117808	38117839	38117828	+	RAMPAGE_only	5	5	25	1.695611	4.251629	chr4	38117825	38117884	LINE|L2|L2b	+	chr4	38119953	38139175	TBC1D1|NM_001253915.1	+	38119953,38124961,38133083,38137134	38120108,38125131,38133257,38139175	0.800000
subcutaneous_adipose_tissue_female_adult_53_years	chr7	11192759	11192801	11192786	+	High_confidence	8	8	40	2.712977	4.072987	chr7	11192822	11192883	LINE|L1|L1MA1	+	chr7	11192759	11197417	AC004160.1|ENST00000611449.1	+	11192759,11197309	11193050,11197417	0.550000
subcutaneous_adipose_tissue_female_adult_53_years	chr15	89665478	89665634	89665531	-	RAMPAGE_only	18	18	111	7.528512	5.479736	chr15	89665137	89665552	DNA|TcMar-Mariner|MARNA	-	chr15	89664364	89679402	PLIN1|ENST00000300055.9	-	89664364,89666935,89667601,89669499,89669979,89671481,89673209,89677444,89679250	89665942,89667181,89667793,89669672,89670244,89671564,89673414,89677503,89679402	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr4	53716731	53716778	53716744	+	RAMPAGE_only	4	4	19	1.288664	3.572431	chr4	53716454	53716815	LTR|ERVL-MaLR|MLT1J	-	chr4	53695900	53734358	LOC100506444|NR_125918.1	+	53695900,53716831,53733186	53696168,53717007,53734358	0.526316
subcutaneous_adipose_tissue_female_adult_53_years	chr7	80544700	80544703	80544700	+	RAMPAGE_only	21	23	35	2.373855	4.436007	chr7	80544505	80544872	LTR|ERVL-MaLR|THE1B	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.914286
subcutaneous_adipose_tissue_female_adult_53_years	chr1	242203570	242203571	242203570	+	High_confidence	12	12	18	1.220840	3.572431	chr1	242203418	242203822	LTR|ERVL-MaLR|MSTB	+	chr1	242203554	242210827	AL591686.1|ENST00000421878.2	+	242203554,242209217,242210368	242203743,242209335,242210827	0.722222
subcutaneous_adipose_tissue_female_adult_53_years	chr1	147173219	147173233	147173232	+	High_confidence	4	4	14	0.949542	3.182006	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr2	29114149	29114171	29114149	+	High_confidence	11	11	51	3.459046	5.206547	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.686275
subcutaneous_adipose_tissue_female_adult_53_years	chr4	137700880	137700981	137700880	-	High_confidence	46	46	174	11.801452	6.537424	chr4	137700532	137701143	LTR|ERV1|LTR27D	+	chr4	137645701	137700996	STRG.26465.3	-	137645701,137692240,137700819	137648459,137692333,137700996	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr17	632119	632120	632119	+	RAMPAGE_only	8	8	8	0.542595	2.750000	chr17	631967	632257	SINE|Alu|AluJr	+	chr17	1279662	1300987	TRARG1|ENST00000333813.3	+	1279662,1295490,1298250	1280388,1295623,1300987	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr10	118311640	118311686	118311685	-	High_confidence	11	11	34	2.306031	4.231009	chr10	118311545	118311893	DNA|hAT-Charlie|Charlie19a	+	chr10	118310745	118311705	STRG.56618.9	-	118310745,118311206,118311513	118310908,118311313,118311705	0.794118
subcutaneous_adipose_tissue_female_adult_53_years	chr9	5012211	5012242	5012241	+	RAMPAGE_only	4	4	12	0.813893	3.418296	chr9	5012078	5012447	LINE|L1|L1MEf	-	chr9	4985244	5128183	JAK2|ENST00000381652.3	+	4985244,4985939,5021962,5029782,5044402,5050685,5054562,5055668,5064882,5066677,5069021,5069924,5072491,5073697,5077452,5078305,5080228,5080532,5081724,5089673,5090445,5090738,5123003,5126332,5126683	4985630,4986022,5022213,5029906,5044520,5050831,5054884,5055788,5065040,5066789,5069208,5070052,5072626,5073785,5077580,5078444,5080380,5080683,5081861,5089863,5090570,5090911,5123121,5126446,5128183	0.833333
subcutaneous_adipose_tissue_female_adult_53_years	chr10	118784282	118784320	118784282	-	RAMPAGE_only	3	3	11	0.746069	3.095795	chr10	118784224	118784400	LTR|ERVL-MaLR|MLT1H2	-	chr10	118684555	118755249	CACUL1|ENST00000493518.5	-	118684555,118686597,118691264,118693701,118695140,118701305,118707491,118729294,118730283,118754395	118686168,118686641,118691403,118693749,118695230,118701408,118707587,118729397,118730410,118755249	0.636364
subcutaneous_adipose_tissue_female_adult_53_years	chr17	4143196	4143218	4143199	+	High_confidence	56	56	138	9.359772	5.834875	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.971014
subcutaneous_adipose_tissue_female_adult_53_years	chr5	140633630	140633680	140633679	-	High_confidence	18	18	56	3.798168	5.122274	chr5	140633624	140633721	LINE|CR1|L3	+	chr5	140631727	140633701	CD14|ENST00000302014.10	-	140631727,140633068	140632980,140633701	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr2	72693342	72693354	72693353	-	RAMPAGE_only	47	51	71	4.815535	4.672011	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.859155
subcutaneous_adipose_tissue_female_adult_53_years	chr15	38004724	38004745	38004724	+	High_confidence	31	51	128	8.681528	5.596809	chr15	38003252	38004953	LINE|L1|L1M1	-	chr15	38004745	38025018	LINC02345|ENST00000557883.2	+	38004745,38020191,38024680	38004832,38020532,38025018	0.953125
subcutaneous_adipose_tissue_female_adult_53_years	chr2	153871925	153871947	153871925	+	High_confidence	8	9	25	1.695611	4.403856	chr2	153871944	153872268	LTR|ERV1|LTR12D	+	chr2	153871912	154453849	GALNT13|ENST00000392825.7	+	153871912,153900935,153944393,154140336,154242029,154242697,154245811,154259020,154301408,154395990,154408983,154438591,154450410	153872303,153901007,153944639,154140505,154242196,154242905,154245982,154259138,154301589,154396130,154409082,154438726,154453849	0.960000
subcutaneous_adipose_tissue_female_adult_53_years	chr3	135965679	135965749	135965723	+	High_confidence	16	29	153	10.377138	6.030660	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.954248
subcutaneous_adipose_tissue_female_adult_53_years	chr15	52100537	52100544	52100538	-	High_confidence	8	12	28	1.899084	4.521641	chr15	52100279	52100861	LTR|ERVL|MER73	-	chr15	52056674	52100523	AC023906.5|ENST00000558607.1	-	52056674,52100469	52057255,52100523	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	51	52	52	3.526871	4.897724	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.865385
subcutaneous_adipose_tissue_female_adult_53_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	21	21	26	1.763435	3.772055	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.730769
subcutaneous_adipose_tissue_female_adult_53_years	chr10	45000453	45000515	45000503	+	High_confidence	69	71	308	20.889926	6.067533	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.987013
subcutaneous_adipose_tissue_female_adult_53_years	chr5	67798680	67798683	67798682	-	High_confidence	57	92	101	6.850268	5.858190	chr5	67798510	67798862	LTR|ERVL-MaLR|THE1B	-	chr5	67723805	67798671	STRG.29408.1	-	67723805,67798592	67724088,67798671	0.524752
subcutaneous_adipose_tissue_female_adult_53_years	chr21	14744604	14744608	14744604	-	High_confidence	11	21	31	2.102557	4.502583	chr21	14744450	14744793	LTR|ERVL-MaLR|MSTA	-	chr21	14742223	14744588	STRG.86416.1	-	14742223	14744588	0.677419
subcutaneous_adipose_tissue_female_adult_53_years	chrX	48683361	48683363	48683362	+	High_confidence	38	74	75	5.086833	5.161186	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.946667
subcutaneous_adipose_tissue_female_adult_53_years	chr14	100066439	100066440	100066439	+	High_confidence	11	12	13	0.881718	3.180833	chr14	100066222	100066467	SINE|MIR|MIRc	-	chr14	100066436	100128581	EVL|ENST00000557153.5	+	100066436,100084686,100097480,100123538,100126706,100128518	100066487,100084855,100097658,100123602,100126771,100128581	0.769231
subcutaneous_adipose_tissue_female_adult_53_years	chr1	212792444	212792471	212792444	-	High_confidence	3	3	10	0.678244	2.921928	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr6	31587201	31587275	31587201	+	High_confidence	18	18	110	7.460688	5.215592	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.972727
subcutaneous_adipose_tissue_female_adult_53_years	chr6	111387799	111387808	111387800	-	RAMPAGE_only	4	5	9	0.610420	2.750000	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.777778
subcutaneous_adipose_tissue_female_adult_53_years	chr1	171268995	171268996	171268995	+	High_confidence	41	42	53	3.594695	3.886362	chr1	171268815	171269160	LTR|ERVL-MaLR|THE1B	+	chr1	171269007	171285521	STRG.5358.1	+	171269007,171275345,171278728,171280785,171281977,171283143,171285201	171269086,171275508,171278871,171280985,171282333,171283216,171285521	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr4	128570477	128570500	128570487	-	High_confidence	28	28	138	9.359772	5.783278	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.978261
subcutaneous_adipose_tissue_female_adult_53_years	chr16	30445873	30445875	30445873	-	High_confidence	64	93	125	8.478054	5.926610	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.976000
subcutaneous_adipose_tissue_female_adult_53_years	chr8	32927967	32927977	32927976	+	High_confidence	81	89	150	10.173665	5.816294	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927984	33044802	STRG.45844.1	+	32927984,32996200,33041634,33044366	32928093,32996316,33041771,33044802	0.900000
subcutaneous_adipose_tissue_female_adult_53_years	chr15	42404757	42404760	42404759	+	High_confidence	5	7	10	0.678244	2.947703	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404778	42412315	CAPN3|ENST00000337571.8	+	42404778,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412315	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr15	75347042	75347074	75347042	+	High_confidence	4	4	18	1.220840	3.499228	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347052	75349170	NEIL1|ENST00000568059.1	+	75347052,75347246,75348883	75347110,75347473,75349170	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr8	116648841	116648905	116648864	-	RAMPAGE_only	6	6	39	2.645153	4.556752	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.974359
subcutaneous_adipose_tissue_female_adult_53_years	chr9	22660785	22660804	22660803	+	RAMPAGE_only	9	9	22	1.492138	4.004886	chr9	22660757	22660906	LTR|ERV1|HERVH-int	-	chr9	22646199	22824213	LINC01239|NR_038977.1	+	22646199,22674442,22682609,22723308,22820737,22823251	22646296,22674643,22682713,22723430,22821598,22824213	0.636364
subcutaneous_adipose_tissue_female_adult_53_years	chr2	55228156	55228167	55228158	-	RAMPAGE_only	16	20	41	2.780802	4.523986	chr2	55228053	55228212	LINE|L2|L2c	+	chr2	55222271	55224398	CLHC1|ENST00000403506.1	-	55222271,55224190	55222493,55224398	0.560976
subcutaneous_adipose_tissue_female_adult_53_years	chr3	158261904	158261959	158261958	+	RAMPAGE_only	3	3	12	0.813893	3.084963	chr3	158261534	158262067	DNA|hAT-Charlie|MER1A	+	chr3	158203071	158543687	RSRC1|ENST00000482822.2	+	158203071,158298038,158354856,158460934,158537091,158543334	158203245,158298075,158354908,158461003,158537198,158543687	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr13	99313299	99313327	99313326	+	High_confidence	6	6	16	1.085191	3.773557	chr13	99313288	99313401	LINE|L2|L2a	-	chr13	99312782	99386434	UBAC2|ENST00000460562.5	+	99312782,99314096,99318021,99340319,99367786,99385227	99313387,99314220,99318069,99340565,99367906,99386434	0.625000
subcutaneous_adipose_tissue_female_adult_53_years	chr19	49717736	49717777	49717736	+	High_confidence	5	5	15	1.017367	3.506891	chr19	49717515	49717903	LTR|ERVL|LTR50	+	chr19	49717756	49718150	STRG.83658.1	+	49717756	49718150	0.933333
subcutaneous_adipose_tissue_female_adult_53_years	chr3	153763125	153763127	153763126	+	High_confidence	5	8	12	0.813893	3.084963	chr3	153763112	153763203	LTR|ERVL-MaLR|MLT1O	+	chr3	153763236	153764271	STRG.21043.1	+	153763236,153764060	153763467,153764271	0.833333
subcutaneous_adipose_tissue_female_adult_53_years	chr3	40828459	40828465	40828459	+	High_confidence	14	14	31	2.102557	4.456565	chr3	40828292	40828738	LTR|ERVL-MaLR|MLT1H	-	chr3	40828482	40871967	STRG.17591.1	+	40828482,40833580,40871464	40829011,40833724,40871967	0.870968
subcutaneous_adipose_tissue_female_adult_53_years	chr2	55618850	55618889	55618852	-	High_confidence	3	5	11	0.746069	2.646439	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.818182
subcutaneous_adipose_tissue_female_adult_53_years	chr17	35367000	35367032	35367029	-	High_confidence	2	2	8	0.542595	2.521641	chr17	35366789	35367087	SINE|Alu|AluJb	+	chr17	35363621	35367294	SLFN11|ENST00000589562.1	-	35363621,35366946	35363826,35367294	0.875000
subcutaneous_adipose_tissue_female_adult_53_years	chr21	34512192	34512320	34512209	-	High_confidence	36	37	136	9.224123	6.260041	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34482200	34512207	STRG.87489.7	-	34482200,34493062	34492943,34512207	0.933824
subcutaneous_adipose_tissue_female_adult_53_years	chr14	60985978	60985981	60985978	+	RAMPAGE_only	8	8	13	0.881718	3.418296	chr14	60985667	60986111	LTR|ERVL-MaLR|MSTB1	-	chr14	60982364	61037118	SLC38A6|ENST00000526105.5	+	60982364,60984729,61015903,61019540,61030444,61037058	60982638,60984803,61015956,61019580,61030523,61037118	0.538462
subcutaneous_adipose_tissue_female_adult_53_years	chr2	45192665	45192666	45192665	-	High_confidence	11	12	13	0.881718	3.084963	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45187169	45192285	LINC01121|ENST00000454673.1	-	45187169,45192139	45189249,45192285	0.615385
subcutaneous_adipose_tissue_female_adult_53_years	chr9	121286591	121286634	121286591	+	High_confidence	2	2	13	0.881718	3.418296	chr9	121286415	121286709	LINE|L2|L2b	+	chr9	121286591	121332656	GSN|ENST00000545652.6	+	121286591,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286761,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332656	0.923077
subcutaneous_adipose_tissue_female_adult_53_years	chr6	106541107	106541126	106541113	+	High_confidence	6	6	17	1.153015	3.454822	chr6	106541083	106541354	DNA|hAT-Charlie|MER102c	-	chr6	106541133	106555897	CRYBG1|ENST00000457437.1	+	106541133,106541585,106543439,106544570,106544787,106551851,106552183,106553454,106555767	106541295,106541621,106543597,106544697,106544933,106551978,106552216,106553567,106555897	0.941176
subcutaneous_adipose_tissue_female_adult_53_years	chr19	40269423	40269424	40269423	-	High_confidence	12	13	13	0.881718	3.084963	chr19	40269336	40269825	LINE|L1|L1ME3	+	chr19	40255243	40269589	AKT2|ENST00000427375.1	-	40255243,40256925,40265221,40268583,40269422	40255269,40257054,40265351,40268685,40269589	0.846154
subcutaneous_adipose_tissue_female_adult_53_years	chr1	219459168	219459179	219459173	-	High_confidence	47	55	185	12.547520	6.635212	chr1	219458918	219459231	SINE|Alu|AluSc8	+	chr1	219409343	219459179	STRG.6932.2	-	219409343,219411717,219458857	219410267,219411939,219459179	0.637838
subcutaneous_adipose_tissue_female_adult_53_years	chr19	48868595	48868617	48868595	-	High_confidence	113	120	434	29.435804	7.085150	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.974654
subcutaneous_adipose_tissue_female_adult_53_years	chr5	43658695	43658765	43658695	+	High_confidence	12	12	71	4.815535	5.023125	chr5	43658390	43659054	LINE|L1|L1MEb	-	chr5	43658712	43704744	STRG.28722.4	+	43658712,43659170,43675510,43677724,43700118,43702620,43704254	43658953,43659350,43675670,43677806,43700237,43702736,43704744	0.957746
subcutaneous_adipose_tissue_female_adult_53_years	chr11	118700419	118700451	118700419	+	High_confidence	9	9	40	2.712977	4.684184	chr11	118700359	118700777	LTR|ERVL-MaLR|MLT1H	+	chr11	118700415	118700738	STRG.60724.1	+	118700415	118700738	0.550000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	56157322	56157352	56157338	+	High_confidence	12	12	36	2.441680	3.571302	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.888889
subcutaneous_adipose_tissue_female_adult_53_years	chr15	90762400	90762407	90762400	+	High_confidence	7	7	22	1.492138	4.152391	chr15	90762254	90762815	LINE|L2|L2b	-	chr15	90762395	90811327	BLM|ENST00000560136.5	+	90762395,90762965,90766909,90769132,90769437,90782821,90784920,90790648,90794166,90798189,90803520,90804166,90809136,90811204	90762422,90763157,90767023,90769231,90769586,90782928,90785081,90790844,90794357,90798337,90803720,90804359,90809259,90811327	0.590909
subcutaneous_adipose_tissue_female_adult_53_years	chr5	66440355	66440400	66440355	-	High_confidence	9	9	41	2.780802	4.007943	chr5	66440146	66440632	LTR|ERVL-MaLR|MLT1F1	+	chr5	66439615	66440407	STRG.29239.1	-	66439615	66440407	0.756098
subcutaneous_adipose_tissue_female_adult_53_years	chr20	44532569	44532609	44532569	+	High_confidence	16	19	33	2.238206	4.687500	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.727273
subcutaneous_adipose_tissue_female_adult_53_years	chr5	42837185	42837186	42837185	+	High_confidence	184	185	187	12.683169	5.639662	chr5	42836194	42837646	LTR|ERV1|LTR12C	+	chr5	42837203	42839950	STRG.28635.1	+	42837203,42839045	42838037,42839950	0.973262
subcutaneous_adipose_tissue_female_adult_53_years	chr4	153687953	153687954	153687953	+	RAMPAGE_only	9	11	12	0.813893	2.913977	chr4	153687920	153688176	LTR|ERV1|MER57A-int	+	chr4	153684251	153706260	TLR2|NM_001318787.1	+	153684251,153687916,153702226,153702891	153684360,153687988,153702510,153706260	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr2	227688698	227688728	227688727	-	RAMPAGE_only	2	2	6	0.406947	2.584963	chr2	227688379	227690425	LINE|L1|L1M1	+	chr2	227687434	227701252	SLC19A3|ENST00000642268.1	-	227687434,227688165,227695888,227698735,227700912	227687573,227688307,227696081,227699564,227701252	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr3	125123617	125123618	125123617	-	High_confidence	7	9	9	0.610420	2.947703	chr3	125123512	125123811	LTR|ERVL-MaLR|THE1B	-	chr3	125083142	125123599	SLC12A8|ENST00000465475.5	-	125083142,125107480,125110188,125118768,125120598,125123529	125084052,125108126,125110335,125118856,125120686,125123599	0.666667
subcutaneous_adipose_tissue_female_adult_53_years	chr12	16353884	16353885	16353884	+	High_confidence	1157	1199	1608	109.061690	5.601770	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.690299
subcutaneous_adipose_tissue_female_adult_53_years	chr12	48918144	48918145	48918144	+	High_confidence	5	7	7	0.474771	2.521641	chr12	48917875	48918167	DNA|hAT-Charlie|MER102b	+	chr12	48918143	48920963	CCDC65|ENST00000552188.1	+	48918143,48918684,48920929	48918472,48918903,48920963	0.714286
subcutaneous_adipose_tissue_female_adult_53_years	chr16	80998345	80998356	80998355	-	High_confidence	4	5	15	1.017367	3.235926	chr16	80998326	80998792	LINE|L1|L1MB2	+	chr16	80975852	80998659	CMC2|ENST00000564249.5	-	80975852,80981805,80997313,80998284	80976179,80981877,80997429,80998659	0.733333
subcutaneous_adipose_tissue_female_adult_53_years	chr12	79455504	79455539	79455538	-	High_confidence	3	4	8	0.542595	2.521641	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr12	105233207	105233220	105233219	-	High_confidence	20	22	31	2.102557	4.789015	chr12	105233175	105233274	LINE|L2|L2c	+	chr12	105177109	105233154	APPL2|ENST00000547809.5	-	105177109,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105233090	105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105233154	0.870968
subcutaneous_adipose_tissue_female_adult_53_years	chr4	152412488	152412498	152412497	-	High_confidence	7	7	15	1.017367	3.373557	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	9	9	11	0.746069	3.277613	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.545455
subcutaneous_adipose_tissue_female_adult_53_years	chr16	81181330	81181341	81181330	-	High_confidence	6	6	14	0.949542	3.026987	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.785714
subcutaneous_adipose_tissue_female_adult_53_years	chr4	14888179	14888180	14888179	-	High_confidence	15	15	15	1.017367	3.773557	chr4	14888020	14888389	LTR|ERVL-MaLR|THE1A	-	chr4	14470464	14888169	LINC00504|NR_126435.1	-	14470464,14477346,14572146,14614279,14700742,14859542,14888058	14474563,14477458,14572246,14614416,14700781,14859616,14888169	0.600000
subcutaneous_adipose_tissue_female_adult_53_years	chr17	64431522	64431541	64431522	-	RAMPAGE_only	8	8	20	1.356489	4.037401	chr17	64431443	64432048	LTR|ERV1|MER41B	-	chr17	64319414	64413776	STRG.79199.1	-	64319414,64319530,64329699,64341633,64348259,64350379,64352389,64353490,64354932,64356110,64360139,64363148,64369749,64375050,64377823,64390488,64390601,64413713	64319478,64323845,64329722,64341690,64348322,64350433,64352463,64353518,64355040,64356398,64360415,64363397,64370025,64375356,64378117,64390515,64390763,64413776	0.850000
subcutaneous_adipose_tissue_female_adult_53_years	chr1	97904708	97904714	97904708	-	RAMPAGE_only	3	3	7	0.474771	2.584963	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.714286
subcutaneous_adipose_tissue_female_adult_53_years	chr10	70425277	70425278	70425277	+	RAMPAGE_only	43	43	52	3.526871	4.663591	chr10	70424911	70425430	LTR|ERVL-MaLR|MLT1F1	-	chr10	70404378	70428618	EIF4EBP2|ENST00000373218.4	+	70404378,70419913,70421715	70404546,70420099,70428618	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr9	121299286	121299287	121299286	+	High_confidence	9	9	11	0.746069	2.921928	chr9	121299335	121299426	SINE|MIR|MIR	+	chr9	121299792	121332842	GSN|ENST00000373818.8	+	121299792,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121300005,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.636364
subcutaneous_adipose_tissue_female_adult_53_years	chr3	15623784	15623786	15623784	+	RAMPAGE_only	6	9	13	0.881718	3.251629	chr3	15623605	15623980	LTR|ERVL-MaLR|MSTA	+	chr3	15630001	15642240	BTD|ENST00000482824.2	+	15630001,15635423,15641907	15630120,15635688,15642240	0.692308
subcutaneous_adipose_tissue_female_adult_53_years	chr12	109262435	109262459	109262458	+	High_confidence	2	2	7	0.474771	2.584963	chr12	109262492	109262615	DNA|hAT-Tip100|MamRep4096	+	chr12	109263021	109266941	ACACB|ENST00000537279.1	+	109263021,109265109,109265388,109266235	109264386,109265280,109265525,109266941	0.857143
subcutaneous_adipose_tissue_female_adult_53_years	chr8	16192954	16193013	16193012	-	High_confidence	9	9	27	1.831260	4.132944	chr8	16192904	16193159	SINE|Alu|AluSc8	-	chr8	16139316	16192791	MSR1|NM_002445.3	-	16139316,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16192597	16141045,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16192791	0.592593
subcutaneous_adipose_tissue_female_adult_53_years	chr2	9422804	9422818	9422817	-	High_confidence	6	6	12	0.813893	3.084963	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NM_001319068.1	-	9405680,9407448,9408112,9412268,9414177,9418625,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9422660	0.833333
subcutaneous_adipose_tissue_female_adult_53_years	chr15	34588450	34588453	34588452	-	High_confidence	8	15	18	1.220840	3.947703	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.611111
subcutaneous_adipose_tissue_female_adult_53_years	chr4	38816533	38816536	38816533	-	High_confidence	28	29	42	2.848626	4.884184	chr4	38816327	38816690	LTR|ERVL-MaLR|MSTA	-	chr4	38814565	38817023	STRG.24076.8	-	38814565	38817023	0.595238
subcutaneous_adipose_tissue_female_adult_53_years	chr3	180870516	180870552	180870518	-	High_confidence	24	31	46	3.119924	4.882045	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180704303	180870526	STRG.22184.1	-	180704303,180706905,180711192,180711309,180725514,180734486,180737492,180781983,180810409,180847506,180870046	180706740,180708904,180711219,180711382,180725573,180734606,180751410,180782124,180810470,180847624,180870526	0.978261
subcutaneous_adipose_tissue_female_adult_53_years	chr10	70424943	70425070	70425052	+	RAMPAGE_only	12	12	73	4.951184	5.266755	chr10	70424911	70425430	LTR|ERVL-MaLR|MLT1F1	-	chr10	70404378	70428618	EIF4EBP2|ENST00000373218.4	+	70404378,70419913,70421715	70404546,70420099,70428618	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr7	1571036	1571037	1571036	-	High_confidence	5	5	7	0.474771	2.807355	chr7	1570731	1571033	SINE|Alu|AluSx	-	chr7	1567612	1571005	PSMG3|ENST00000252329.3	-	1567612,1569123,1570473	1567850,1569360,1571005	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr8	11864387	11864423	11864408	-	RAMPAGE_only	5	5	29	1.966909	4.430632	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.793103
subcutaneous_adipose_tissue_female_adult_53_years	chr12	643627	643636	643635	-	High_confidence	36	37	112	7.596337	5.404333	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.544643
subcutaneous_adipose_tissue_female_adult_53_years	chr6	164340967	164340981	164340967	+	High_confidence	14	14	24	1.627786	4.027169	chr6	164340927	164341075	LTR|ERV1|HERVH-int	-	chr6	164340969	164341284	STRG.39222.1	+	164340969	164341284	0.708333
subcutaneous_adipose_tissue_female_adult_53_years	chr1	19344364	19344410	19344388	-	RAMPAGE_only	9	9	30	2.034733	4.582119	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.933333
subcutaneous_adipose_tissue_female_adult_53_years	chr14	81427414	81427467	81427461	-	High_confidence	21	21	87	5.900726	5.343295	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.965517
subcutaneous_adipose_tissue_female_adult_53_years	chr2	38239249	38239295	38239294	-	High_confidence	7	8	34	2.306031	4.663910	chr2	38239272	38239326	LINE|L2|L2c	+	chr2	38195868	38239574	STRG.9165.1	-	38195868,38202501,38203262,38239057	38200084,38202689,38203451,38239574	0.735294
subcutaneous_adipose_tissue_female_adult_53_years	chr16	11774341	11774379	11774378	-	High_confidence	3	3	9	0.610420	2.503258	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	1.000000
subcutaneous_adipose_tissue_female_adult_53_years	chr19	3062922	3062983	3062922	-	High_confidence	20	23	73	4.951184	5.125213	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.986301
subcutaneous_adipose_tissue_female_adult_53_years	chr11	60327249	60327250	60327249	+	High_confidence	109	109	140	9.495421	5.788328	chr11	60327087	60327483	LTR|ERVL-MaLR|MLT1A1	+	chr11	60327254	60341331	STRG.58521.1	+	60327254,60334881,60337740,60339865,60340775	60327408,60335042,60337947,60339964,60341331	0.892857
subcutaneous_adipose_tissue_female_adult_53_years	chr3	113625940	113625941	113625940	+	RAMPAGE_only	6	6	8	0.542595	2.750000	chr3	113625438	113625948	LINE|L1|L1MA3	-	chr3	113627416	113629643	STRG.19890.1	+	113627416	113629643	0.500000
subcutaneous_adipose_tissue_female_adult_53_years	chr9	121313938	121314021	121314002	+	RAMPAGE_only	142	147	582	39.473821	5.934308	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.984536
subcutaneous_adipose_tissue_female_adult_53_years	chr1	70947340	70947393	70947349	+	RAMPAGE_only	26	29	88	5.968550	5.535747	chr1	70947197	70947555	LTR|ERVL-MaLR|THE1A	+	chr1	70959833	70966064	STRG.2523.2	+	70959833,70964845	70961562,70966064	0.852273
subcutaneous_adipose_tissue_female_adult_53_years	chr1	1721677	1721708	1721707	-	High_confidence	2	2	7	0.474771	2.584963	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.714286
suprapubic_skin_female_adult_53_years	chr19	35503774	35503775	35503774	-	RAMPAGE_only	50	52	59	3.291586	4.655419	chr19	35503464	35503775	SINE|Alu|AluSz	-	chr19	35503303	35508557	DMKN|ENST00000489395.6	-	35503303,35505717,35505938	35503447,35505765,35508557	0.711864
suprapubic_skin_female_adult_53_years	chr5	148094022	148094026	148094022	+	RAMPAGE_only	3	3	8	0.446317	3.000000	chr5	148094012	148094305	SINE|Alu|AluJo	+	chr5	148090927	148101428	SPINK5|ENST00000476608.1	+	148090927,148091164,148094353,148095817,148097866,148099233,148100453,148101354	148091045,148091228,148094481,148095905,148097994,148099315,148100581,148101428	0.500000
suprapubic_skin_female_adult_53_years	chr4	86956786	86956795	86956792	+	RAMPAGE_only	6	6	12	0.669475	3.277613	chr4	86956448	86956942	LINE|L1|L1MB8	-	chr4	86949413	86962480	STRG.43505.1	+	86949413	86962480	0.833333
suprapubic_skin_female_adult_53_years	chr22	37855584	37855613	37855584	+	RAMPAGE_only	7	8	20	1.115792	3.721928	chr22	37855622	37855711	SINE|tRNA|LFSINE_Vert	+	chr22	37858564	37871290	EIF3L|ENST00000464790.1	+	37858564,37862968,37863271,37870175,37871199	37858740,37863038,37863345,37870347,37871290	0.900000
suprapubic_skin_female_adult_53_years	chr5	119420424	119420441	119420440	+	High_confidence	12	16	39	2.175794	4.701944	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119420455	119473980	STRG.52995.24	+	119420455,119456314,119473907	119420813,119456368,119473980	0.820513
suprapubic_skin_female_adult_53_years	chr11	64807612	64807651	64807612	-	RAMPAGE_only	3	4	13	0.725265	3.251629	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64804374	64806368	MEN1|ENST00000478548.1	-	64804374,64805033,64805634	64804816,64805198,64806368	0.538462
suprapubic_skin_female_adult_53_years	chr11	70341094	70341095	70341094	+	High_confidence	11	11	14	0.781054	3.392747	chr11	70340877	70341163	LTR|ERVL-MaLR|MLT1F1	-	chr11	70340995	70356254	PPFIA1|ENST00000530294.5	+	70340995,70343668,70348188,70354300,70355638,70356160	70341097,70343892,70348420,70354452,70355811,70356254	0.500000
suprapubic_skin_female_adult_53_years	chr1	1721688	1721705	1721704	-	High_confidence	4	4	15	0.836844	3.640224	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.600000
suprapubic_skin_female_adult_53_years	chr9	129489063	129489126	129489125	+	High_confidence	6	7	32	1.785267	4.500000	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.843750
suprapubic_skin_female_adult_53_years	chr9	108604500	108604502	108604501	-	RAMPAGE_only	10	12	18	1.004213	3.852169	chr9	108603963	108604554	LINE|L2|L2c	+	chr9	108597307	108615120	STRG.85986.1	-	108597307	108615120	0.888889
suprapubic_skin_female_adult_53_years	chr3	189872707	189872794	189872793	+	RAMPAGE_only	12	13	52	2.901059	4.958563	chr3	189872433	189872796	DNA|TcMar-Tigger|Tigger17a	-	chr3	189789694	189873575	TP63|ENST00000460036.1	+	189789694,189808271,189864231,189866681,189867832,189868579,189869323,189872858	189789842,189808526,189864418,189866797,189867942,189868716,189869406,189873575	0.884615
suprapubic_skin_female_adult_53_years	chr16	22279946	22279951	22279946	+	RAMPAGE_only	3	4	9	0.502106	2.947703	chr16	22279712	22280000	SINE|Alu|AluSz	+	chr16	22257643	22288732	STRG.126338.2	+	22257643,22258493,22260461,22263109,22264817,22266389,22273625,22280197,22283886	22257770,22258695,22260529,22263187,22264880,22266876,22273750,22280376,22288732	0.555556
suprapubic_skin_female_adult_53_years	chr14	77736976	77737045	77736978	-	High_confidence	10	14	55	3.068428	5.079011	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.909091
suprapubic_skin_female_adult_53_years	chr7	142862042	142862132	142862042	+	High_confidence	9	13	65	3.626324	5.168769	chr7	142861936	142862309	LTR|ERVL-MaLR|MLT1A0	-	chr7	142862034	142871087	EPHB6|ENST00000611578.4	+	142862034,142862755,142863126,142863630,142863965,142864533,142865474,142865959,142866480,142866940,142867607,142867996,142868240,142868491,142868973,142869816,142870213,142870529,142870795	142862133,142862833,142863327,142863695,142864262,142864749,142865630,142866316,142866605,142867068,142867722,142868049,142868360,142868739,142869147,142869966,142870407,142870685,142871087	0.738462
suprapubic_skin_female_adult_53_years	chr17	40188625	40188631	40188630	+	High_confidence	3	4	8	0.446317	3.000000	chr17	40188437	40188679	LINE|L2|L2b	-	chr17	40188537	40193831	RAPGEFL1|ENST00000545893.5	+	40188537,40189207,40190433,40190639,40191315,40191581,40192212,40192605,40192925,40193362,40193663	40188978,40189375,40190531,40190762,40191494,40191672,40192263,40192693,40192990,40193417,40193831	0.875000
suprapubic_skin_female_adult_53_years	chr6	107044180	107044207	107044200	+	RAMPAGE_only	4	4	10	0.557896	2.725481	chr6	107044140	107044239	LINE|L1|L1PB4	-	chr6	107028568	107051335	C6orf203|ENST00000625458.1	+	107028568,107030024,107039748,107044259,107051056	107028797,107030107,107040230,107044332,107051335	0.900000
suprapubic_skin_female_adult_53_years	chr6	149896010	149896011	149896010	-	High_confidence	10	10	14	0.781054	3.546594	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.642857
suprapubic_skin_female_adult_53_years	chr12	108563922	108563925	108563922	+	RAMPAGE_only	6	6	13	0.725265	3.418296	chr12	108563913	108564050	DNA|TcMar-Mariner|MARNA	-	chr12	108562616	108567444	ISCU|ENST00000535405.1	+	108562616,108564059,108565320,108567189	108562736,108564392,108565431,108567444	0.923077
suprapubic_skin_female_adult_53_years	chr13	52429434	52429571	52429543	-	High_confidence	19	23	183	10.209496	6.269110	chr13	52429311	52429618	LINE|L2|L2b	+	chr13	52425769	52429367	VPS36|ENST00000492650.1	-	52425769,52426988,52427186,52429235	52426066,52427066,52427219,52429367	0.502732
suprapubic_skin_female_adult_53_years	chr6	137004319	137004330	137004329	-	RAMPAGE_only	3	3	9	0.502106	2.750000	chr6	137004197	137004475	SINE|Alu|AluSz	-	chr6	136999970	137044964	STRG.64181.6	-	136999970,137008598,137009316,137011273,137044640	137004760,137008743,137009492,137017103,137044964	0.888889
suprapubic_skin_female_adult_53_years	chr8	143725530	143725565	143725544	-	RAMPAGE_only	5	5	13	0.725265	3.418296	chr8	143725326	143725569	SINE|Alu|AluSz	+	chr8	143723932	143733744	FAM83H|NM_198488.3	-	143723932,143728966,143729158,143730135,143733690	143728723,143729091,143729323,143730597,143733744	0.846154
suprapubic_skin_female_adult_53_years	chr14	45232597	45232598	45232597	-	RAMPAGE_only	9	10	10	0.557896	2.947703	chr14	45232512	45232669	SINE|Alu|AluSz6	+	chr14	45227686	45231441	MIS18BP1|ENST00000555653.1	-	45227686,45231140	45227814,45231441	0.800000
suprapubic_skin_female_adult_53_years	chr2	149185839	149185878	149185849	+	RAMPAGE_only	6	6	24	1.338950	4.251629	chr2	149185638	149186596	DNA|TcMar-Tigger|Tigger1	+	chr2	149127184	149215256	STRG.22671.10	+	149127184,149212991,149214545	149208412,149213122,149215256	1.000000
suprapubic_skin_female_adult_53_years	chr15	75347042	75347074	75347042	+	High_confidence	9	9	20	1.115792	3.584184	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.650000
suprapubic_skin_female_adult_53_years	chr7	144255837	144255838	144255837	-	High_confidence	4	4	7	0.390527	2.584963	chr7	144255821	144256073	LINE|L1|L1PA2	+	chr7	144251661	144256244	OR2A20P|ENST00000498397.1	-	144251661,144253532,144254603,144255508,144256180	144252492,144253588,144254696,144255732,144256244	0.714286
suprapubic_skin_female_adult_53_years	chr15	99620961	99620986	99620961	+	RAMPAGE_only	6	6	34	1.896846	3.740771	chr15	99620843	99621144	SINE|Alu|AluSx1	-	chr15	99632977	99716488	MEF2A|NM_001130928.2	+	99632977,99671322,99674392,99675398,99690240,99706728,99710633,99712389	99633173,99671454,99674612,99675458,99690428,99706855,99710760,99716488	0.852941
suprapubic_skin_female_adult_53_years	chr1	201328158	201328253	201328195	+	High_confidence	62	63	212	11.827394	5.591531	chr1	201328155	201328286	LINE|L2|L2c	-	chr1	201328334	201330170	PKP1|ENST00000477817.1	+	201328334,201330073	201328868,201330170	0.877358
suprapubic_skin_female_adult_53_years	chr8	18076288	18076313	18076296	-	High_confidence	4	4	14	0.781054	3.392747	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18075857	18076682	ASAH1|ENST00000637840.1	-	18075857	18076682	0.785714
suprapubic_skin_female_adult_53_years	chr6	118651548	118651626	118651563	-	High_confidence	15	15	62	3.458955	5.245910	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.983871
suprapubic_skin_female_adult_53_years	chr15	42147977	42147994	42147993	-	High_confidence	4	4	15	0.836844	3.664498	chr15	42147909	42148206	SINE|Alu|AluYc	+	chr15	42141208	42147733	STRG.120304.10	-	42141208,42142527,42143977,42144449,42145574,42145765,42147625	42142204,42142714,42144144,42144644,42145682,42147346,42147733	0.533333
suprapubic_skin_female_adult_53_years	chr16	14245406	14245426	14245406	+	RAMPAGE_only	3	3	11	0.613686	2.921928	chr16	14244144	14245439	LINE|L1|L1ME3A	-	chr16	14231335	14266771	STRG.125793.5	+	14231335,14240236,14246472,14248925,14251861,14252364,14258100,14260908	14234283,14245660,14247507,14249081,14252023,14252502,14258161,14266771	0.727273
suprapubic_skin_female_adult_53_years	chr10	45000503	45000515	45000503	+	High_confidence	4	4	10	0.557896	2.846439	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
suprapubic_skin_female_adult_53_years	chr5	133089611	133089678	133089677	+	RAMPAGE_only	6	7	31	1.729477	4.773557	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.903226
suprapubic_skin_female_adult_53_years	chr20	41348921	41348922	41348921	+	High_confidence	9	10	12	0.669475	3.277613	chr20	41348889	41349006	SINE|MIR|MIRc	+	chr20	41348521	41358829	STRG.145166.7	+	41348521,41349088,41349773,41350054,41351820,41352059,41352605,41352797,41354644,41354824,41355895,41357039,41358438,41358721	41348887,41349172,41349894,41350397,41351920,41352220,41352699,41352867,41354737,41354863,41356034,41358351,41358542,41358829	0.500000
suprapubic_skin_female_adult_53_years	chr20	63533084	63533136	63533084	-	RAMPAGE_only	3	3	10	0.557896	2.846439	chr20	63533055	63533365	SINE|Alu|AluSg	-	chr20	63528424	63537354	STRG.146480.5	-	63528424,63530077,63530745,63532525,63534151,63537084	63529723,63530231,63530927,63533704,63535059,63537354	0.900000
suprapubic_skin_female_adult_53_years	chr15	43233953	43233973	43233970	-	RAMPAGE_only	21	21	42	2.343163	3.448536	chr15	43233762	43234175	LTR|ERV1|MER34A1	+	chr15	43233176	43267014	STRG.120404.5	-	43233176,43233553,43235468,43238816,43239162,43240851,43252758,43253505,43256567,43260051,43260399,43266839	43233344,43234889,43236350,43239056,43239266,43240990,43252936,43253634,43256686,43260297,43260579,43267014	0.880952
suprapubic_skin_female_adult_53_years	chr10	119823511	119823561	119823556	+	RAMPAGE_only	4	5	12	0.669475	3.095795	chr10	119823468	119823569	LINE|L2|L2b	+	chr10	119809295	119828360	STRG.94075.6	+	119809295,119811756,119820845,119822430,119823070	119810217,119811955,119820917,119822504,119828360	0.916667
suprapubic_skin_female_adult_53_years	chr12	27649608	27649633	27649608	+	RAMPAGE_only	4	4	8	0.446317	3.000000	chr12	27649538	27649851	SINE|Alu|AluSx1	-	chr12	27524255	27676557	STRG.103952.4	+	27524255,27578151,27633361,27634909,27646061,27647728,27654721,27656615,27660883,27664361,27667165,27671430,27672426,27673766,27674191,27676427	27524365,27578239,27633460,27635115,27646148,27654313,27654814,27656730,27660945,27664446,27667320,27671546,27672483,27673827,27674221,27676557	1.000000
suprapubic_skin_female_adult_53_years	chr19	39198980	39199009	39199008	+	RAMPAGE_only	4	4	14	0.781054	3.392747	chr19	39198854	39199049	SINE|MIR|MIRb	+	chr19	39196960	39201884	STRG.140741.1	+	39196960,39198052,39198201,39199169,39199697,39199877,39200615	39197319,39198115,39198253,39199607,39199790,39200484,39201884	0.857143
suprapubic_skin_female_adult_53_years	chr12	109852067	109852151	109852107	-	RAMPAGE_only	23	25	84	4.686326	4.905793	chr12	109851848	109852148	SINE|Alu|AluSq2	-	chr12	109850942	109880488	GLTP|NM_016433.3	-	109850942,109855618,109857525,109858682,109880271	109852737,109855769,109857659,109858741,109880488	0.988095
suprapubic_skin_female_adult_53_years	chr17	69314938	69314939	69314938	-	High_confidence	6	6	9	0.502106	3.000000	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	0.888889
suprapubic_skin_female_adult_53_years	chr3	156703646	156703687	156703686	+	RAMPAGE_only	7	7	13	0.725265	3.188722	chr3	156703731	156704030	SINE|Alu|AluYm1	+	chr3	156681165	156706750	TIPARP|ENST00000495891.1	+	156681165,156694019,156695864,156703423,156704683	156681189,156694188,156696025,156703702,156706750	0.769231
suprapubic_skin_female_adult_53_years	chr19	52093957	52093973	52093972	-	High_confidence	5	9	20	1.115792	3.826875	chr19	52093852	52094032	SINE|Alu|AluJb	+	chr19	52076907	52093899	ZNF841|ENST00000599430.1	-	52076907,52084786,52088936,52093845	52077084,52084878,52089002,52093899	0.750000
suprapubic_skin_female_adult_53_years	chr12	109591279	109591298	109591297	+	RAMPAGE_only	3	3	9	0.502106	2.750000	chr12	109591205	109591326	DNA|hAT-Ac|OldhAT1	+	chr12	109587860	109597262	MVK|ENST00000540353.1	+	109587860,109591240,109595027,109596425	109590861,109591357,109595181,109597262	0.888889
suprapubic_skin_female_adult_53_years	chr14	21360422	21360455	21360437	-	RAMPAGE_only	3	3	14	0.781054	3.180833	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351471	21384266	SUPT16H|ENST00000216297.6	-	21351471,21353487,21353702,21354410,21357196,21357926,21358314,21359483,21360414,21360845,21361077,21362196,21362793,21363033,21363232,21363437,21364826,21365069,21366438,21368268,21369203,21369749,21370335,21371873,21373337,21383861	21352818,21353565,21353832,21354540,21357366,21358002,21358427,21359609,21360533,21360972,21361213,21362324,21362947,21363149,21363328,21363503,21364939,21365143,21366529,21368441,21369355,21369896,21370488,21372044,21373430,21384266	0.857143
suprapubic_skin_female_adult_53_years	chr3	112119198	112119228	112119200	+	RAMPAGE_only	3	5	14	0.781054	3.378783	chr3	112119102	112119372	SINE|Alu|AluSq2	+	chr3	112086437	112121052	STRG.34217.3	+	112086437,112093359,112102837,112109542,112112963,112116641	112088616,112093489,112102965,112109613,112113145,112121052	0.928571
suprapubic_skin_female_adult_53_years	chr12	113334806	113334832	113334806	-	High_confidence	7	8	14	0.781054	3.392747	chr12	113334758	113334823	LINE|L2|L2b	-	chr12	113307799	113334833	SLC8B1|ENST00000553238.5	-	113307799,113310233,113315334,113316525,113316941,113318963,113320580,113320849,113321055,113321195,113332722,113334442	113307912,113310355,113315476,113316656,113317001,113319071,113320686,113320907,113321108,113321348,113332960,113334833	0.928571
suprapubic_skin_female_adult_53_years	chr4	99906547	99906560	99906547	-	High_confidence	3	3	9	0.502106	2.750000	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.888889
suprapubic_skin_female_adult_53_years	chr3	52615424	52615444	52615443	-	High_confidence	5	5	12	0.669475	3.277613	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.916667
suprapubic_skin_female_adult_53_years	chr3	134485443	134485467	134485443	-	High_confidence	2	3	9	0.502106	3.000000	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.777778
suprapubic_skin_female_adult_53_years	chr7	100355147	100355175	100355147	+	RAMPAGE_only	2	2	9	0.502106	2.725481	chr7	100355125	100355232	LINE|L1|L1MD	-	chr7	100353735	100359014	PILRB|ENST00000431140.5	+	100353735,100355142,100356749,100358219,100358898	100354012,100355240,100356883,100358366,100359014	0.555556
suprapubic_skin_female_adult_53_years	chr11	67432302	67432391	67432302	+	High_confidence	5	5	32	1.785267	4.562500	chr11	67432311	67432468	LINE|L2|L2b	+	chr11	67432239	67432815	RPS6KB2|ENST00000525726.1	+	67432239,67432736	67432657,67432815	0.656250
suprapubic_skin_female_adult_53_years	chr1	151038266	151038284	151038266	+	High_confidence	7	8	15	0.836844	3.521641	chr1	151038092	151038395	SINE|Alu|AluJb	+	chr1	151038398	151043068	BNIPL|ENST00000392802.3	+	151038398,151038795,151042955	151038564,151039026,151043068	0.800000
suprapubic_skin_female_adult_53_years	chr2	200857048	200857109	200857108	-	RAMPAGE_only	13	13	33	1.841057	4.680758	chr2	200857055	200857331	SINE|Alu|AluSx	+	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.909091
suprapubic_skin_female_adult_53_years	chr1	116407187	116407223	116407187	-	RAMPAGE_only	2	2	10	0.557896	2.947703	chr1	116407130	116407204	LINE|L2|L2c	+	chr1	116405511	116418564	ATP1A1-AS1|ENST00000369492.4	-	116405511,116406927,116418458	116406148,116407195,116418564	0.800000
suprapubic_skin_female_adult_53_years	chr1	21876237	21876372	21876237	-	RAMPAGE_only	6	6	47	2.622111	4.750877	chr1	21876092	21876241	LINE|L2|L2c	+	chr1	21822231	21937297	HSPG2|NM_005529.6	-	21822231,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174,21937154	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896310,21937297	0.978723
suprapubic_skin_female_adult_53_years	chr3	48691745	48691747	48691746	-	RAMPAGE_only	32	59	70	3.905272	5.468359	chr3	48691533	48691793	SINE|Alu|AluSz	+	chr3	48689609	48693335	IP6K2|ENST00000491686.1	-	48689609,48691306,48692953	48689713,48691482,48693335	0.585714
suprapubic_skin_female_adult_53_years	chr11	90251204	90251205	90251204	+	High_confidence	7	8	10	0.557896	3.121928	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	1.000000
suprapubic_skin_female_adult_53_years	chr5	75336495	75336527	75336526	+	High_confidence	4	4	13	0.725265	3.418296	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.615385
suprapubic_skin_female_adult_53_years	chr2	109553411	109553434	109553411	-	RAMPAGE_only	3	3	9	0.502106	2.641604	chr2	109553262	109553559	SINE|Alu|AluSx1	+	chr2	109542796	109613657	SEPT10|NM_001321515.1	-	109542796,109546049,109553086,109564365,109565762,109567814,109574580,109585125,109585720,109613111	109544324,109546237,109553219,109564534,109565859,109567976,109574767,109585321,109585838,109613657	1.000000
suprapubic_skin_female_adult_53_years	chr19	11821881	11821884	11821883	+	RAMPAGE_only	5	8	10	0.557896	2.947703	chr19	11821832	11822388	LTR|ERVL|MER54A	-	chr19	11814286	11831678	STRG.138611.4	+	11814286,11831367	11830677,11831678	0.800000
suprapubic_skin_female_adult_53_years	chr2	180222865	180222902	180222894	+	High_confidence	28	48	108	6.025276	5.975823	chr2	180222690	180223269	LTR|ERVL|LTR33C	-	chr2	180222894	180409141	STRG.24337.2	+	180222894,180223124,180224182,180406311	180223032,180223355,180224276,180409141	0.824074
suprapubic_skin_female_adult_53_years	chr2	201163859	201163956	201163955	+	RAMPAGE_only	9	9	46	2.566321	4.525385	chr2	201163983	201164293	SINE|Alu|AluSx1	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	0.978261
suprapubic_skin_female_adult_53_years	chr2	9422801	9422803	9422801	-	High_confidence	3	4	7	0.390527	2.584963	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NM_001319068.1	-	9405680,9407448,9408112,9412268,9414177,9418625,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9422660	0.714286
suprapubic_skin_female_adult_53_years	chr1	51366183	51366196	51366190	-	RAMPAGE_only	3	3	8	0.446317	2.807355	chr1	51366072	51366367	SINE|Alu|AluJb	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.500000
suprapubic_skin_female_adult_53_years	chr14	22909560	22909577	22909560	-	RAMPAGE_only	5	5	10	0.557896	3.121928	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22906027	22919110	RBM23|ENST00000554955.5	-	22906027,22908332,22909482,22911327,22918998	22906368,22908380,22909595,22911403,22919110	0.900000
suprapubic_skin_female_adult_53_years	chr3	75604450	75604473	75604464	-	RAMPAGE_only	4	4	13	0.725265	3.392747	chr3	75604057	75608125	LTR|ERV1|HERVE-int	-	chr3	75580434	75580681	STRG.33342.1	-	75580434	75580681	0.769231
suprapubic_skin_female_adult_53_years	chr2	39453873	39453882	39453881	+	High_confidence	7	7	15	0.836844	3.324863	chr2	39453626	39453953	SINE|Alu|AluJo	-	chr2	39453921	39624356	AC007388.1|ENST00000446698.5	+	39453921,39454296,39516413,39518582,39624098	39453931,39454365,39516541,39518710,39624356	0.733333
suprapubic_skin_female_adult_53_years	chr11	72007951	72008000	72007999	-	High_confidence	54	60	86	4.797905	5.432265	chr11	72007942	72008176	SINE|MIR|MIR	+	chr11	72002863	72007916	NUMA1|ENST00000540626.5	-	72002863,72003886,72004224,72004639,72005232,72006034,72007188	72003538,72004099,72004341,72004816,72005369,72006263,72007916	1.000000
suprapubic_skin_female_adult_53_years	chr6	32120251	32120317	32120251	-	High_confidence	4	4	17	0.948423	3.327820	chr6	32120093	32120397	SINE|Alu|AluY	-	chr6	32118830	32120420	ATF6B|ENST00000492342.1	-	32118830,32118955,32119823	32118866,32119141,32120420	0.941176
suprapubic_skin_female_adult_53_years	chr10	97460302	97460307	97460302	-	High_confidence	4	4	11	0.613686	3.121928	chr10	97460299	97460601	SINE|Alu|AluJb	+	chr10	97458325	97460319	MMS19|ENST00000485400.1	-	97458325,97458799,97459222,97459361	97458719,97458900,97459282,97460319	0.909091
suprapubic_skin_female_adult_53_years	chr20	2325858	2325863	2325858	+	RAMPAGE_only	3	3	9	0.502106	2.750000	chr20	2325789	2325878	SINE|MIR|MIR3	+	chr20	2296000	2341078	TGM3|ENST00000381458.5	+	2296000,2309656,2310177,2311010,2312897,2317067,2317349,2325848,2328119,2332001,2335115,2339853,2340433	2296070,2309830,2310417,2311129,2313026,2317245,2317485,2325952,2328365,2332310,2335273,2339987,2341078	0.666667
suprapubic_skin_female_adult_53_years	chr10	104053276	104053286	104053276	-	RAMPAGE_only	2	3	7	0.390527	2.521641	chr10	104053217	104053878	LINE|L2|L2a	+	chr10	104031349	104055969	STRG.93666.3	-	104031349,104032673,104032905,104033237,104033944,104034620,104035262,104035473,104036491,104037044,104037635,104038405,104039070,104039444,104039607,104039972,104040350,104041064,104041302,104041484,104042419,104043500,104043824,104045757,104046746,104047738,104048068,104049408,104050088,104050620,104050847,104051480,104052154,104053030,104053919,104054091,104054980,104055371,104055781	104032290,104032754,104032968,104033375,104034334,104034767,104035373,104035563,104036632,104037113,104037773,104038528,104039170,104039519,104039640,104039999,104040410,104041118,104041344,104041538,104042455,104043581,104043860,104045793,104046773,104047810,104048104,104049471,104050124,104050656,104050901,104051516,104052217,104053135,104053982,104054118,104055007,104055401,104055969	1.000000
suprapubic_skin_female_adult_53_years	chr19	51027559	51027668	51027667	-	High_confidence	50	53	350	19.526359	7.182064	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.511429
suprapubic_skin_female_adult_53_years	chr16	11775062	11775108	11775107	-	High_confidence	3	3	17	0.948423	3.625000	chr16	11775090	11775400	SINE|Alu|AluSg	+	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	0.764706
suprapubic_skin_female_adult_53_years	chr1	176162907	176162963	176162962	-	RAMPAGE_only	5	6	29	1.617898	4.487123	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	176116645	176206440	COP1|ENST00000491600.5	-	176116645,176135009,176136487,176149005,176162868,176163814,176168664,176175909,176184632,176206348	176116681,176135086,176136547,176149074,176162988,176163891,176168748,176176007,176184692,176206440	0.827586
suprapubic_skin_female_adult_53_years	chr14	91462126	91462224	91462223	-	High_confidence	13	14	69	3.849482	5.096521	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.884058
suprapubic_skin_female_adult_53_years	chr19	53865343	53865393	53865343	+	High_confidence	12	12	39	2.175794	4.611949	chr19	53865313	53865624	SINE|Alu|AluSx	-	chr19	53865350	53865762	STRG.142306.1	+	53865350	53865762	0.871795
suprapubic_skin_female_adult_53_years	chr18	31026048	31026111	31026101	-	RAMPAGE_only	14	17	53	2.956849	3.301807	chr18	31026092	31026664	LINE|L2|L2a	-	chr18	30990007	31042741	DSC3|ENST00000360428.8	-	30990007,30996790,31001617,31004141,31006906,31008015,31008268,31018070,31018665,31022335,31024348,31025759,31029508,31030972,31032191,31042591	30994372,30997048,31001739,31004366,31007131,31008158,31008525,31018256,31018800,31022502,31024493,31025915,31029628,31031172,31032276,31042741	0.962264
suprapubic_skin_female_adult_53_years	chr9	128261462	128261485	128261462	-	High_confidence	4	6	13	0.725265	2.918296	chr9	128261376	128261424	SINE|MIR|MIR3	-	chr9	128260125	128260991	GOLGA2|ENST00000486411.1	-	128260125,128260464	128260189,128260991	0.846154
suprapubic_skin_female_adult_53_years	chr3	142159985	142160012	142160011	-	RAMPAGE_only	12	15	40	2.231584	3.934184	chr3	142159854	142160147	SINE|Alu|AluSx	-	chr3	142157526	142225607	GK5|NM_001039547.2	-	142157526,142170324,142171418,142172352,142177481,142181460,142182922,142185928,142186193,142186451,142187703,142198801,142204694,142213525,142215598,142225308	142165770,142170458,142171478,142172456,142177576,142181565,142183049,142185989,142186267,142186513,142187779,142198933,142204788,142213601,142215692,142225607	0.975000
suprapubic_skin_female_adult_53_years	chr5	176411455	176411459	176411458	-	RAMPAGE_only	180	218	316	17.629512	6.552121	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.604430
suprapubic_skin_female_adult_53_years	chr12	112039555	112039622	112039621	-	RAMPAGE_only	3	4	12	0.669475	3.277613	chr12	112039466	112039729	LINE|L2|L2c	+	chr12	112027787	112108785	NAA25|ENST00000552527.5	-	112027787,112033232,112039228,112042038,112043087,112043624,112047664,112048291,112053557,112054387,112060269,112061180,112068879,112071894,112074674,112075677,112078187,112078633,112081059,112087682,112090725,112093050,112108715	112029653,112033379,112040578,112042104,112043211,112043868,112047790,112048443,112053657,112054568,112060359,112061388,112068992,112072064,112074764,112075789,112078266,112078741,112081134,112087801,112090864,112093136,112108785	0.833333
suprapubic_skin_female_adult_53_years	chr11	10498015	10498114	10498088	+	RAMPAGE_only	8	8	52	2.901059	4.464413	chr11	10497907	10498117	SINE|MIR|MIR	-	chr11	10494278	10505891	STRG.95816.5	+	10494278,10495569,10501469,10502720,10504548,10505707	10495030,10500249,10501590,10502894,10504659,10505891	0.942308
suprapubic_skin_female_adult_53_years	chr19	55069587	55069613	55069611	-	High_confidence	7	9	19	1.060002	3.576618	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55044323	55069546	RDH13|NM_138412.3	-	55044323,55047386,55048328,55048658,55056652,55059156,55064295,55069321	55045309,55047488,55048541,55048763,55056808,55059275,55064412,55069546	0.894737
suprapubic_skin_female_adult_53_years	chr2	149145387	149145500	149145387	+	RAMPAGE_only	4	4	20	1.115792	3.281373	chr2	149145350	149145872	LTR|ERVL|LTR16D2	-	chr2	149127184	149215256	STRG.22671.10	+	149127184,149212991,149214545	149208412,149213122,149215256	0.950000
suprapubic_skin_female_adult_53_years	chr3	46679954	46680081	46680074	-	RAMPAGE_only	11	16	79	4.407378	4.825270	chr3	46679923	46680138	SINE|MIR|MIRb	+	chr3	46670598	46693676	ALS2CL|ENST00000431015.5	-	46670598,46671487,46671883,46672139,46673338,46674565,46676641,46676848,46678258,46679209,46681499,46682028,46683129,46683781,46683988,46685524,46686307,46686982,46687618,46688097,46689337,46693642	46671064,46671584,46672033,46672201,46673381,46676402,46676738,46677022,46678389,46681407,46681573,46682094,46683326,46683848,46684047,46685644,46686439,46687148,46687684,46688296,46689465,46693676	0.987342
suprapubic_skin_female_adult_53_years	chr5	148089136	148089164	148089153	+	RAMPAGE_only	2	3	8	0.446317	2.807355	chr5	148089083	148089302	LINE|L2|L2c	+	chr5	148090652	148098003	SPINK5|ENST00000481286.5	+	148090652,148091164,148094353,148095817,148097866	148090700,148091228,148094481,148095905,148098003	0.750000
suprapubic_skin_female_adult_53_years	chr1	212610784	212610830	212610829	+	RAMPAGE_only	5	5	16	0.892634	3.189898	chr1	212610830	212610980	SINE|MIR|MIR3	+	chr1	212608669	212619247	STRG.12196.5	+	212608669,212614982,212618126	212614914,212615261,212619247	0.937500
suprapubic_skin_female_adult_53_years	chr10	5524401	5524437	5524401	-	RAMPAGE_only	3	3	11	0.613686	2.921928	chr10	5524160	5524444	LINE|L2|L2a	+	chr10	5514243	5523177	CALML3-AS1|ENST00000543008.1	-	5514243,5521915	5517512,5523177	0.818182
suprapubic_skin_female_adult_53_years	chr15	80059745	80059746	80059745	+	High_confidence	7	7	9	0.502106	2.725481	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059713	80138360	ZFAND6|ENST00000558494.5	+	80059713,80120327,80121711,80122699,80131179,80137479	80059809,80120498,80121820,80122800,80131293,80138360	1.000000
suprapubic_skin_female_adult_53_years	chr15	72242756	72242765	72242756	-	RAMPAGE_only	2	2	8	0.446317	3.000000	chr15	72242722	72243260	LINE|L2|L2c	-	chr15	72241217	72245787	PARP6|ENST00000566991.5	-	72241217,72241900,72242156,72242619	72241557,72241985,72242220,72245787	0.500000
suprapubic_skin_female_adult_53_years	chr9	120821128	120821129	120821128	-	RAMPAGE_only	8	8	8	0.446317	2.750000	chr9	120821013	120821215	SINE|MIR|MIR3	+	chr9	120816052	120826894	STRG.86850.2	-	120816052,120820838,120821354,120826764	120818163,120820979,120824685,120826894	0.875000
suprapubic_skin_female_adult_53_years	chr12	9407452	9407507	9407506	-	RAMPAGE_only	16	17	51	2.845269	4.905426	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9401578	9408976	STRG.102912.1	-	9401578,9402426,9406307,9407307,9408855	9401859,9402556,9406398,9407452,9408976	0.901961
suprapubic_skin_female_adult_53_years	chr6	167271170	167271176	167271175	+	High_confidence	31	31	54	3.012638	4.619995	chr6	167271035	167271181	DNA|hAT-Charlie|MER5A	+	chr6	167271168	167296196	UNC93A|ENST00000503433.5	+	167271168,167291438,167294516,167296031	167271458,167291576,167294698,167296196	0.944444
suprapubic_skin_female_adult_53_years	chr17	56904518	56904550	56904518	-	High_confidence	6	6	20	1.115792	3.826875	chr17	56904513	56905129	LINE|L1|L1ME3C	+	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.850000
suprapubic_skin_female_adult_53_years	chr1	93324663	93324666	93324665	-	RAMPAGE_only	24	28	39	2.175794	4.714647	chr1	93324562	93324774	LINE|L2|L2a	+	chr1	93305110	93339374	CCDC18-AS1|ENST00000450843.5	-	93305110,93324634,93325768,93339356	93305470,93324729,93325895,93339374	0.717949
suprapubic_skin_female_adult_53_years	chr2	159228488	159228489	159228488	+	RAMPAGE_only	5	5	7	0.390527	2.521641	chr2	159228445	159228758	LINE|L2|L2	+	chr2	159224392	159232659	TANC1|ENST00000496406.1	+	159224392,159229577	159228896,159232659	1.000000
suprapubic_skin_female_adult_53_years	chr11	119011120	119011121	119011120	+	High_confidence	6	6	8	0.446317	2.807355	chr11	119010842	119011146	DNA|hAT-Charlie|MER1B	-	chr11	119011206	119015092	CCDC84|ENST00000583842.1	+	119011206,119011938,119013231,119014993	119011311,119012254,119013262,119015092	0.750000
suprapubic_skin_female_adult_53_years	chr17	82081601	82081668	82081606	-	High_confidence	9	9	41	2.287373	4.684146	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.609756
suprapubic_skin_female_adult_53_years	chr18	79695163	79695164	79695163	+	RAMPAGE_only	11	11	11	0.613686	3.277613	chr18	79695045	79695184	SINE|MIR|MIR3	-	chr18	79681429	79754510	CTDP1|ENST00000299543.8	+	79681429,79695224,79695976,79697859,79704766,79710345,79712971,79714490,79717534,79717809,79728906,79736354,79753651	79681517,79695308,79696070,79697988,79704917,79710436,79713138,79715528,79717676,79718016,79729069,79736521,79754510	0.909091
suprapubic_skin_female_adult_53_years	chr3	5135898	5135928	5135927	+	High_confidence	4	4	9	0.502106	2.725481	chr3	5135802	5136087	SINE|Alu|AluSx	-	chr3	5135786	5155668	STRG.29226.1	+	5135786	5155668	1.000000
suprapubic_skin_female_adult_53_years	chr8	94649560	94649598	94649597	+	RAMPAGE_only	7	8	41	2.287373	4.421832	chr8	94649501	94649812	SINE|Alu|AluSx1	-	chr8	94648214	94649984	STRG.77674.15	+	94648214	94649984	0.951220
suprapubic_skin_female_adult_53_years	chr15	42190807	42190841	42190833	-	RAMPAGE_only	2	2	12	0.669475	3.459432	chr15	42190521	42190917	LINE|L2|L2c	+	chr15	42182099	42208307	STRG.120325.6	-	42182099,42187270,42187757,42192065,42199895,42208080	42184700,42187363,42191560,42192098,42199961,42208307	0.916667
suprapubic_skin_female_adult_53_years	chr14	67761673	67761683	67761682	-	High_confidence	5	5	11	0.613686	2.913977	chr14	67761676	67761768	LINE|L1|L1PA5	+	chr14	67750472	67761491	ZFYVE26|ENST00000557306.1	-	67750472,67752343,67753706,67754070,67755050,67755947,67761365	67751096,67752526,67753766,67754212,67755250,67756145,67761491	1.000000
suprapubic_skin_female_adult_53_years	chr17	50737440	50737462	50737440	+	RAMPAGE_only	1	2	7	0.390527	2.584963	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50719628	50751004	LUC7L3|ENST00000508482.5	+	50719628,50740305,50741101,50741656,50743705,50744651,50745719,50746541,50750500,50750723	50719831,50740345,50741246,50741731,50743810,50744813,50746003,50746702,50750641,50751004	0.571429
suprapubic_skin_female_adult_53_years	chr7	6044569	6044594	6044569	-	RAMPAGE_only	5	8	14	0.781054	3.039149	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6041152	6046437	EIF2AK1|ENST00000470168.1	-	6041152,6042932,6044561,6046070	6041219,6042993,6044661,6046437	0.785714
suprapubic_skin_female_adult_53_years	chr10	72220058	72220088	72220087	+	RAMPAGE_only	2	3	8	0.446317	2.521641	chr10	72220047	72220353	SINE|Alu|AluSp	+	chr10	72215999	72235860	ANAPC16|NM_001242546.1	+	72215999,72220053,72223887,72230365,72233000	72216138,72220379,72224056,72230440,72235860	0.875000
suprapubic_skin_female_adult_53_years	chr1	175988779	175988780	175988779	-	RAMPAGE_only	8	8	9	0.502106	2.500000	chr1	175988550	175988843	SINE|Alu|AluSx	+	chr1	175944830	176081256	COP1|ENST00000461830.6	-	175944830,175947194,175986942,175988287,176027571,176043185,176043809,176046180,176081151	175945170,175947239,175987103,175989479,176027688,176043203,176043818,176046324,176081256	0.666667
suprapubic_skin_female_adult_53_years	chr1	75375882	75375937	75375885	-	High_confidence	36	36	81	4.518957	4.977384	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75202034	75376227	STRG.5702.1	-	75202034,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75211552,75213793,75213989,75214678,75215857,75217960,75218595,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75376227	0.901235
suprapubic_skin_female_adult_53_years	chr12	6678796	6678797	6678796	-	RAMPAGE_only	4	4	6	0.334738	2.584963	chr12	6678728	6678843	LINE|L2|L2a	+	chr12	6666729	6689292	ZNF384|ENST00000361959.7	-	6666729,6669030,6670759,6672349,6673215,6678126,6678662,6678945,6679454,6688166,6689097	6668115,6669189,6670838,6672532,6673440,6678460,6678710,6679183,6679525,6688226,6689292	0.500000
suprapubic_skin_female_adult_53_years	chr14	63998684	63998692	63998688	+	RAMPAGE_only	3	3	10	0.557896	2.641604	chr14	63998561	63998862	SINE|Alu|AluSx1	-	chr14	63909097	64225564	SYNE2|ENST00000554584.5	+	63909097,63940613,63941694,63941884,63942050,63949824,63954718,63961524,63963898,63967708,63976562,63977904,63978851,63980653,63980985,63982629,63983736,63986455,63990410,63990941,63993834,63995043,63996946,63997300,63998218,63998913,64000561,64001933,64002719,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024256,64024911,64025129,64026578,64027483,64029894,64031015,64034493,64047999,64049610,64051556,64055943,64062750,64065431,64070644,64073967,64075944,64078465,64080455,64081442,64087670,64089573,64090865,64093348,64097948,64098746,64101985,64107490,64113340,64119426,64120926,64122011,64125128,64126326,64126597,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64167232,64167494,64168876,64170227,64173898,64174943,64177357,64188549,64188859,64190070,64190601,64190915,64202186,64202800,64208757,64209427,64209950,64211960,64212810,64214193,64216247,64219207,64220436,64221575,64223188,64224460,64224982,64225318	63909227,63940675,63941790,63941962,63942143,63950006,63954915,63961625,63964000,63967846,63976727,63978017,63979014,63980732,63981173,63982794,63983886,63986617,63990569,63991115,63993969,63995202,63997158,63997391,63998328,63999040,64000719,64002081,64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64022863,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64034592,64048155,64049876,64053657,64056266,64062895,64065650,64070910,64074136,64076100,64078606,64080638,64081580,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64125210,64126479,64126807,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64167387,64167639,64168971,64170321,64174009,64175138,64177483,64188708,64189009,64190237,64190614,64191120,64202265,64202963,64208945,64209578,64210124,64212098,64212954,64214470,64216424,64219410,64220637,64221704,64223380,64224547,64225045,64225564	0.500000
suprapubic_skin_female_adult_53_years	chr6	89656019	89656087	89656019	-	RAMPAGE_only	5	5	39	2.175794	4.831075	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642774	89674745	STRG.61811.6	-	89642774,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674745	0.948718
suprapubic_skin_female_adult_53_years	chr3	189309857	189309867	189309857	+	High_confidence	2	3	7	0.390527	2.521641	chr3	189309787	189309871	LINE|RTE-BovB|MamRTE1	+	chr3	189309893	189315595	TPRG1|ENST00000481307.1	+	189309893,189310385,189315492	189310177,189310539,189315595	0.857143
suprapubic_skin_female_adult_53_years	chr15	42148105	42148129	42148128	-	RAMPAGE_only	7	7	17	0.948423	3.852169	chr15	42147909	42148206	SINE|Alu|AluYc	+	chr15	42146674	42156609	STRG.120304.5	-	42146674,42147625,42150103,42150372,42150607,42153619,42154091,42154321,42155516,42156438	42147346,42149848,42150141,42150486,42153342,42153660,42154220,42154458,42155589,42156609	1.000000
suprapubic_skin_female_adult_53_years	chr7	111413970	111413995	111413970	-	RAMPAGE_only	4	4	15	0.836844	2.682589	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	111402182	111415811	STRG.71587.1	-	111402182	111415811	0.933333
suprapubic_skin_female_adult_53_years	chr6	158785794	158785800	158785794	-	RAMPAGE_only	5	5	9	0.502106	2.750000	chr6	158785763	158786085	SINE|Alu|AluJo	+	chr6	158765741	158789474	EZR|ENST00000392177.8	-	158765741,158767260,158769325,158769783,158770763,158771243,158776407,158783519,158784643,158785308,158787107,158789287,158789462	158767078,158767512,158769418,158769944,158770894,158771407,158776504,158783666,158784727,158785583,158787203,158789371,158789474	0.666667
suprapubic_skin_female_adult_53_years	chr16	28535778	28535801	28535778	-	RAMPAGE_only	4	4	10	0.557896	3.121928	chr16	28535736	28535981	SINE|Alu|AluJr4	-	chr16	28532707	28539174	NUPR1|ENST00000324873.7	-	28532707,28538005,28538795	28537669,28538155,28539174	0.900000
suprapubic_skin_female_adult_53_years	chr2	189782421	189782450	189782421	-	High_confidence	7	8	19	1.060002	3.614369	chr2	189782212	189782378	LINE|L1|L1MB3	-	chr2	189770323	189783382	ORMDL1|ENST00000325795.7	-	189770323,189775564,189782421	189771902,189775716,189783382	0.631579
suprapubic_skin_female_adult_53_years	chr11	62598052	62598072	62598052	-	RAMPAGE_only	2	2	10	0.557896	3.169925	chr11	62597909	62598004	DNA|hAT-Tip100|MER91C	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.900000
suprapubic_skin_female_adult_53_years	chr1	40388737	40388841	40388737	+	RAMPAGE_only	17	18	61	3.403165	4.778167	chr1	40387671	40389155	LTR|ERV1|LTR12C	+	chr1	40385588	40389928	STRG.2712.1	+	40385588,40387889	40387834,40389928	0.934426
suprapubic_skin_female_adult_53_years	chr3	37411064	37411083	37411064	+	High_confidence	12	12	29	1.617898	4.236369	chr3	37410319	37412626	LINE|L1|L1MA3	-	chr3	37411137	37418374	C3orf35|NM_001302832.1	+	37411137,37412364,37416553,37417018,37417252	37411309,37412488,37416724,37417142,37418374	0.551724
suprapubic_skin_female_adult_53_years	chr8	101558329	101558413	101558329	+	RAMPAGE_only	5	5	34	1.896846	4.653496	chr8	101558164	101558394	LINE|L1|L1MC5a	-	chr8	101492757	101666893	GRHL2|ENST00000395927.1	+	101492757,101543240,101552714,101558418,101570338,101573667,101577407,101599056,101619538,101631636,101632225,101636896,101644130,101649413,101664453,101666588	101492849,101543436,101552782,101558812,101570394,101573824,101577519,101599151,101619697,101631724,101632365,101636928,101644225,101649499,101664518,101666893	0.676471
suprapubic_skin_female_adult_53_years	chr20	37503994	37504197	37504099	-	High_confidence	30	33	213	11.883184	4.994019	chr20	37503129	37504179	LINE|L2|L2b	+	chr20	37499892	37503975	BLCAP|ENST00000613961.1	-	37499892	37503975	0.990610
suprapubic_skin_female_adult_53_years	chr3	180847515	180847551	180847550	-	RAMPAGE_only	5	5	15	0.836844	3.664498	chr3	180847349	180847643	SINE|Alu|AluSz6	+	chr3	180707588	180870178	LOC101928882|NR_109986.1	-	180707588,180711192,180711309,180725514,180733478,180734486,180737492,180747879,180748245,180751347,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180733682,180734606,180737814,180748043,180748319,180751410,180782124,180810470,180847624,180870178	0.866667
suprapubic_skin_female_adult_53_years	chr14	24435997	24436010	24436009	+	High_confidence	3	3	7	0.390527	2.584963	chr14	24435906	24436044	LINE|L1|L1PB4	-	chr14	24435456	24438408	KHNYN|ENST00000556255.1	+	24435456,24436387,24437035	24436179,24436489,24438408	0.571429
suprapubic_skin_female_adult_53_years	chr17	56412600	56412603	56412601	+	High_confidence	4	6	9	0.502106	3.000000	chr17	56412352	56412894	LTR|ERVL|MLT2A2	+	chr17	56412588	56443167	STRG.132783.1	+	56412588,56440326,56442842	56412815,56440424,56443167	0.666667
suprapubic_skin_female_adult_53_years	chr3	46670753	46670775	46670753	-	RAMPAGE_only	2	4	8	0.446317	2.750000	chr3	46670602	46670732	SINE|MIR|MIR3	-	chr3	46668996	46677455	ALS2CL|ENST00000486301.5	-	46668996,46671487,46671883,46672139,46673338,46674565,46676244,46676641,46677394	46671064,46671584,46672033,46672201,46673381,46675976,46676402,46677022,46677455	1.000000
suprapubic_skin_female_adult_53_years	chr7	23267813	23267815	23267813	+	RAMPAGE_only	5	9	10	0.557896	3.169925	chr7	23267446	23267814	LTR|ERVL-MaLR|MLT1A0	-	chr7	23246745	23275096	GPNMB|ENST00000647578.1	+	23246745,23253306,23254168,23256891,23259979,23260455,23261481,23266516,23267885,23269966,23273520,23274064	23246927,23253459,23254312,23257065,23260138,23260773,23261565,23266615,23267988,23270175,23273614,23275096	0.600000
suprapubic_skin_female_adult_53_years	chr20	62286388	62286405	62286388	+	RAMPAGE_only	6	6	18	1.004213	2.641604	chr20	62286166	62286468	SINE|Alu|AluSx1	+	chr20	62273308	62294865	STRG.146393.9	+	62273308,62279156,62281057,62281789,62284045,62285535,62286582,62289206,62291702,62293784	62273406,62279339,62281165,62281879,62284169,62286488,62286711,62289330,62291793,62294865	0.944444
suprapubic_skin_female_adult_53_years	chr3	79332086	79332121	79332120	-	RAMPAGE_only	16	19	27	1.506319	3.408053	chr3	79331860	79332169	SINE|Alu|AluYj4	+	chr3	79330339	79333891	STRG.33465.1	-	79330339	79333891	0.962963
suprapubic_skin_female_adult_53_years	chr1	32768078	32768097	32768096	+	RAMPAGE_only	4	5	9	0.502106	3.169925	chr1	32768079	32768253	SINE|MIR|MIR3	+	chr1	32765666	32774970	KIAA1522|ENST00000373480.1	+	32765666,32767786,32768061,32768651,32769672,32769879,32772864	32765827,32767957,32768117,32768775,32769786,32772441,32774970	1.000000
suprapubic_skin_female_adult_53_years	chr3	65383674	65383694	65383693	-	RAMPAGE_only	3	4	10	0.557896	2.721928	chr3	65383574	65383652	DNA|hAT-Ac|OldhAT1	-	chr3	65379343	65401704	MAGI1|ENST00000468159.1	-	65379343,65381876,65383531,65387142,65391141,65401529	65379554,65382069,65383623,65387226,65391358,65401704	0.500000
suprapubic_skin_female_adult_53_years	chr21	38818092	38818197	38818092	+	RAMPAGE_only	8	10	59	3.291586	5.484172	chr21	38817983	38818117	SINE|MIR|MIRb	+	chr21	38816083	38824955	STRG.148399.6	+	38816083,38819502,38821585,38822673	38818646,38819766,38821704,38824955	0.864407
suprapubic_skin_female_adult_53_years	chr17	40499155	40499185	40499184	-	RAMPAGE_only	15	15	32	1.785267	4.253236	chr17	40498996	40499458	LTR|ERV1|LTR2	+	chr17	40457806	40501597	STRG.131651.2	-	40457806,40460633,40469655,40478306,40478579,40479673,40480699,40482128,40482323,40484483,40484920,40487035,40488545,40495986	40458694,40460724,40477729,40478333,40478648,40479842,40480768,40482206,40482416,40484609,40485007,40487460,40488969,40501597	0.937500
suprapubic_skin_female_adult_53_years	chr20	33606805	33606807	33606805	+	RAMPAGE_only	4	7	10	0.557896	2.646439	chr20	33606362	33606851	LTR|ERVL-MaLR|MLT1C	-	chr20	33600335	33650036	CBFA2T2|ENST00000359606.3	+	33600335,33606955,33611093,33619516,33623114,33624763,33628349,33629718,33636639,33640340,33644346	33600465,33607099,33611335,33619606,33623296,33625017,33628435,33629914,33636708,33640531,33650036	1.000000
suprapubic_skin_female_adult_53_years	chr3	57907996	57907997	57907996	+	RAMPAGE_only	8	8	11	0.613686	3.277613	chr3	57908044	57908279	SINE|MIR|MIRc	+	chr3	57912294	57916971	SLMAP|ENST00000476471.1	+	57912294,57913157,57916905	57912701,57913275,57916971	0.909091
suprapubic_skin_female_adult_53_years	chr3	188880096	188880125	188880124	+	RAMPAGE_only	5	6	10	0.557896	2.947703	chr3	188880018	188880329	SINE|Alu|AluY	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.800000
suprapubic_skin_female_adult_53_years	chr15	92939390	92939436	92939397	+	High_confidence	3	4	16	0.892634	3.327820	chr15	92939359	92939489	DNA|hAT-Charlie|MER5A	+	chr15	92939653	92949228	CHD2|ENST00000637613.1	+	92939653,92941821,92942842,92944414,92945820,92946037,92946247,92948951	92939718,92941955,92943068,92944515,92945865,92946082,92946340,92949228	0.750000
suprapubic_skin_female_adult_53_years	chr19	45823800	45823823	45823822	-	High_confidence	4	6	13	0.725265	3.546594	chr19	45823777	45823871	LINE|RTE-BovB|MamRTE1	-	chr19	45816482	45824012	SYMPK|ENST00000598329.2	-	45816482,45816797,45817958,45821383,45822755,45823371,45823766	45816577,45816974,45818146,45821485,45822846,45823472,45824012	0.538462
suprapubic_skin_female_adult_53_years	chr11	47237650	47237651	47237650	+	High_confidence	9	9	9	0.502106	3.169925	chr11	47237434	47237734	SINE|Alu|AluSc8	-	chr11	47237805	47239217	DDB2|ENST00000614884.1	+	47237805,47238137,47238799	47238001,47238183,47239217	0.888889
suprapubic_skin_female_adult_53_years	chr10	126954551	126954552	126954551	+	RAMPAGE_only	6	6	9	0.502106	2.750000	chr10	126954407	126955097	LINE|L1|L1MB3	-	chr10	126948444	127452516	STRG.94585.3	+	126948444,126970701,126977947,126981917,126987520,126990454,126996747,126998091,126999353,127000171,127008731,127012294,127018709,127023199,127024684,127026351,127031649,127032136,127037718,127042624,127043063,127052680,127061667,127106230,127110247,127125473,127127668,127248007,127257334,127339005,127343645,127354668,127362063,127373780,127374057,127380081,127381277,127384789,127403054,127404324,127409036,127409312,127410839,127415151,127418364,127419665,127425873,127433282,127439026,127444125,127447393,127451331	126949455,126970785,126977988,126981973,126987617,126990603,126996883,126998249,126999435,127000307,127008804,127012374,127018835,127023324,127024783,127026424,127031753,127032320,127037816,127042714,127043164,127052815,127061776,127106301,127110354,127125601,127127764,127248109,127257429,127339084,127343746,127354727,127362212,127373866,127374214,127380122,127381368,127384909,127403144,127404429,127409178,127409391,127410924,127415238,127418541,127419749,127426011,127433428,127439225,127444279,127447545,127452516	0.666667
suprapubic_skin_female_adult_53_years	chr12	3764887	3764911	3764887	-	High_confidence	4	4	8	0.446317	2.750000	chr12	3764482	3765028	LTR|ERVL|MLT2A2	-	chr12	3612904	3764819	STRG.102461.2	-	3612904,3616953,3619270,3627435,3627624,3633603,3638123,3641731,3644594,3648541,3654211,3656310,3659563,3673445,3678914,3680237,3696771,3713236,3732941,3764564	3615439,3617030,3619372,3627550,3627706,3633736,3638457,3641838,3644640,3648613,3654399,3656406,3659654,3673592,3679098,3680349,3697035,3713317,3733210,3764819	0.875000
suprapubic_skin_female_adult_53_years	chr12	56639574	56639575	56639574	-	High_confidence	12	12	15	0.836844	3.521641	chr12	56639492	56639794	SINE|Alu|AluSg	+	chr12	56638279	56639418	ATP5F1B|ENST00000551182.1	-	56638279,56639105	56638423,56639418	0.866667
suprapubic_skin_female_adult_53_years	chr3	197527012	197527063	197527036	-	High_confidence	3	4	17	0.948423	3.280639	chr3	197526011	197526990	LTR|ERV1|LTR78	-	chr3	197524620	197527134	STRG.39061.1	-	197524620	197527134	0.941176
suprapubic_skin_female_adult_53_years	chr8	129752852	129752922	129752921	-	RAMPAGE_only	7	7	33	1.841057	4.562500	chr8	129752564	129757710	LINE|L1|L1MA2	+	chr8	129704215	129777587	STRG.79743.5	-	129704215,129707047,129748445,129749451,129749989,129750430,129751541,129752697,129760544,129765733,129776101,129777367	129706606,129707182,129748740,129749525,129750119,129750570,129752147,129752820,129762731,129765793,129776285,129777587	0.939394
suprapubic_skin_female_adult_53_years	chr19	55048590	55048594	55048590	-	RAMPAGE_only	3	3	9	0.502106	2.725481	chr19	55048571	55048632	SINE|Alu|AluJo	+	chr19	55027592	55053928	AC011476.2|ENST00000585492.1	-	55027592,55044904,55047386,55048328,55048658,55053752	55027862,55045309,55047488,55048541,55048763,55053928	0.777778
suprapubic_skin_female_adult_53_years	chr10	25772224	25772253	25772252	+	RAMPAGE_only	10	10	36	2.008425	4.781036	chr10	25770441	25774433	LTR|ERV1|HERVH-int	-	chr10	25808647	25912616	STRG.89320.1	+	25808647,25813038,25852532,25890180,25901269,25907157	25808690,25813223,25852690,25890309,25906206,25912616	0.527778
suprapubic_skin_female_adult_53_years	chr8	29167637	29167670	29167637	-	RAMPAGE_only	4	4	19	1.060002	3.826875	chr8	29167637	29167761	SINE|MIR|MIR3	-	chr8	29067278	29198154	STRG.75070.2	-	29067278,29069726,29071619,29075280,29092744,29099132,29108138,29109433,29109917,29113462,29116830,29118867,29122590,29123365,29124023,29126481,29127121,29130532,29132307,29134039,29140062,29140467,29142156,29146377,29147391,29148576,29150296,29155725,29160732,29165661,29167372,29176067,29177465,29180103,29181918,29186291,29188514,29190996,29196186	29069571,29070766,29072316,29075343,29092878,29099241,29108192,29109511,29110070,29113555,29117007,29118992,29122646,29123492,29124123,29126511,29127268,29130665,29132465,29134210,29140191,29140617,29142303,29146540,29147602,29148767,29150383,29155856,29160867,29165772,29167585,29176179,29177578,29180238,29182006,29186472,29188607,29191057,29198154	0.736842
suprapubic_skin_female_adult_53_years	chr8	100336304	100336313	100336308	+	High_confidence	5	5	12	0.669475	3.095795	chr8	100336300	100336359	DNA|hAT-Charlie|MER102b	-	chr8	100336311	100336733	STRG.77984.1	+	100336311	100336733	0.833333
suprapubic_skin_female_adult_53_years	chr6	79631294	79631329	79631302	+	High_confidence	58	58	153	8.535808	5.924137	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.993464
suprapubic_skin_female_adult_53_years	chr1	95092485	95092486	95092485	+	High_confidence	36	36	37	2.064215	4.239098	chr1	95091207	95092800	LTR|ERV1|LTR12C	+	chr1	95092499	95092904	STRG.7227.1	+	95092499	95092904	0.891892
suprapubic_skin_female_adult_53_years	chr10	91950900	91950901	91950900	+	RAMPAGE_only	8	8	9	0.502106	3.000000	chr10	91950832	91951125	SINE|Alu|AluJo	-	chr10	91923768	91989395	STRG.92625.2	+	91923768,91935656,91939951,91942421,91951402,91953736,91956527,91957224,91959064,91959784,91959977,91962537,91964076,91966636,91980453,91981642,91982082,91982586,91984200,91989153	91924090,91935780,91940066,91942568,91951566,91953873,91956657,91957293,91959282,91959880,91960154,91962678,91964201,91966757,91980558,91981792,91982225,91982761,91984404,91989395	0.555556
suprapubic_skin_female_adult_53_years	chr10	100002974	100002998	100002997	-	RAMPAGE_only	4	4	10	0.557896	2.921928	chr10	100002786	100003067	LINE|L1|L1M5	+	chr10	99875576	100009919	DNMBP|ENST00000324109.8	-	99875576,99879810,99884010,99885686,99886299,99888824,99894945,99896266,99898085,99898742,99899918,99907994,99908952,99955213,99969114,99971979,100009837	99877336,99880361,99884209,99885866,99886632,99888953,99895050,99896397,99898285,99898760,99900066,99908094,99909146,99957205,99969237,99972134,100009919	0.900000
suprapubic_skin_female_adult_53_years	chr15	41998425	41998594	41998593	-	RAMPAGE_only	6	8	71	3.961061	5.329118	chr15	41998341	41998549	SINE|MIR|MIRb	-	chr15	41987040	42021049	STRG.120303.4	-	41987040,41988048,41989414,41990142,41992736,41993555,41995359,41997123,41999916,42000103,42001156,42002653,42004937,42005989,42007728,42013684,42020934	41987375,41988156,41989552,41990235,41992959,41993649,41995496,41999561,42000000,42000282,42001220,42002696,42004978,42006121,42007865,42013757,42021049	1.000000
suprapubic_skin_female_adult_53_years	chr1	52913986	52914081	52914036	-	RAMPAGE_only	15	15	80	4.463168	5.141876	chr1	52913984	52914299	LINE|L2|L2b	-	chr1	52913719	52921721	ECHDC2|ENST00000474789.1	-	52913719,52921552	52914095,52921721	0.850000
suprapubic_skin_female_adult_53_years	chr17	67920083	67920114	67920113	+	High_confidence	5	5	22	1.227371	3.975418	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	0.954545
suprapubic_skin_female_adult_53_years	chr7	128631811	128631825	128631811	+	RAMPAGE_only	3	3	9	0.502106	3.000000	chr7	128631793	128632103	LTR|ERVL|MER21C	-	chr7	128625515	128652334	STRG.72208.4	+	128625515,128626294,128629393,128631679,128638773,128641596,128648791,128651037,128651188	128625855,128626530,128629458,128631869,128641379,128642281,128648982,128651095,128652334	0.666667
suprapubic_skin_female_adult_53_years	chr1	93324812	93324830	93324812	-	High_confidence	2	2	8	0.446317	2.521641	chr1	93324761	93324840	LINE|CR1|L3b	-	chr1	93264646	93324691	CCDC18-AS1|ENST00000415150.5	-	93264646,93305387,93315148,93318167,93324634	93264772,93305470,93315269,93318228,93324691	0.750000
suprapubic_skin_female_adult_53_years	chr3	134485414	134485417	134485414	-	High_confidence	3	3	7	0.390527	2.584963	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.857143
suprapubic_skin_female_adult_53_years	chr6	3083218	3083281	3083280	+	RAMPAGE_only	3	4	22	1.227371	4.004886	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3081870	3115185	STRG.56654.4	+	3081870,3089580,3104224,3105481,3110802,3113052	3085408,3089657,3104315,3106051,3110955,3115185	1.000000
suprapubic_skin_female_adult_53_years	chr18	63587309	63587346	63587309	+	High_confidence	5	5	16	0.892634	3.625000	chr18	63587176	63587346	DNA|hAT-Charlie|MER5B	-	chr18	63587299	63599198	SERPINB13|ENST00000269489.9	+	63587299,63588650,63589655,63592347,63592853,63594354,63595028,63596958	63587450,63588832,63589742,63592476,63592971,63594497,63595184,63599198	0.812500
suprapubic_skin_female_adult_53_years	chr3	37411266	37411293	37411292	+	High_confidence	3	3	8	0.446317	2.500000	chr3	37410319	37412626	LINE|L1|L1MA3	-	chr3	37411208	37418101	C3orf35|ENST00000425564.2	+	37411208,37412369,37416553,37417018,37417252	37411309,37412488,37416724,37417142,37418101	0.750000
suprapubic_skin_female_adult_53_years	chr7	134075647	134075648	134075647	+	High_confidence	6	6	7	0.390527	2.584963	chr7	134075339	134075700	LTR|ERVL-MaLR|THE1B	-	chr7	134074763	134076607	STRG.72358.1	+	134074763	134076607	0.714286
suprapubic_skin_female_adult_53_years	chr1	62050655	62050683	62050669	+	RAMPAGE_only	4	6	14	0.781054	3.128085	chr1	62050264	62050838	LTR|ERVL-MaLR|MLT1L	-	chr1	61952311	62117393	PATJ|ENST00000307297.8	+	61952311,61990167,62017855,62037976,62050965,62079449,62084514,62100318,62108436,62114052,62116531,62117131	61952411,61990364,62017947,62038049,62051058,62079567,62084648,62100408,62108520,62114246,62116679,62117393	0.571429
suprapubic_skin_female_adult_53_years	chr12	9908900	9908934	9908933	-	RAMPAGE_only	5	5	12	0.669475	3.095795	chr12	9903201	9910908	LTR|ERV1|HERVI-int	-	chr12	9884733	9932347	STRG.102959.3	-	9884733,9901428,9916699,9922065,9932274	9901351,9913680,9916803,9922232,9932347	0.916667
suprapubic_skin_female_adult_53_years	chr11	33696930	33696979	33696955	-	High_confidence	11	17	77	4.295799	5.518324	chr11	33696789	33697100	LINE|L2|L2a	+	chr11	33669370	33696848	STRG.97245.1	-	33669370,33670914,33696585	33669645,33670979,33696848	0.701299
suprapubic_skin_female_adult_53_years	chr19	15681597	15681598	15681597	+	High_confidence	9	9	11	0.613686	3.121928	chr19	15681355	15681801	LTR|ERVL|LTR40c	-	chr19	15681500	15697143	CYP4F12|ENST00000546608.1	+	15681500,15683492,15685067,15695935,15696160,15696907	15682514,15684882,15685197,15696069,15696512,15697143	0.909091
suprapubic_skin_female_adult_53_years	chr2	108753640	108753660	108753659	+	RAMPAGE_only	3	3	9	0.502106	2.750000	chr2	108753592	108753767	SINE|Alu|AluSz6	-	chr2	108751550	108778414	STRG.21138.4	+	108751550,108751870,108752997,108758412,108762100,108763236,108771700,108772488,108772867,108775731,108777129	108751703,108751994,108755259,108758548,108762195,108768388,108771871,108772581,108773046,108775936,108778414	0.888889
suprapubic_skin_female_adult_53_years	chr8	101202405	101202438	101202429	-	High_confidence	2	3	13	0.725265	3.418296	chr8	101202158	101202485	SINE|Alu|AluSg7	+	chr8	101198936	101201657	ZNF706|ENST00000519103.1	-	101198936,101199989,101201606	101199239,101200123,101201657	0.846154
suprapubic_skin_female_adult_53_years	chr5	32403145	32403158	32403148	-	RAMPAGE_only	7	7	19	1.060002	4.169925	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.789474
suprapubic_skin_female_adult_53_years	chr19	282754	282778	282777	-	RAMPAGE_only	9	9	24	1.338950	3.425119	chr19	282643	282733	SINE|MIR|MIR1_Amn	-	chr19	281045	288537	PLPP2|ENST00000621795.1	-	281045,282133,282751	281537,282310,288537	0.833333
suprapubic_skin_female_adult_53_years	chrX	53546435	53546454	53546435	-	RAMPAGE_only	2	2	6	0.334738	2.584963	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53542442	53547809	HUWE1|ENST00000468322.2	-	53542442,53543885,53545028,53546435,53546703,53547672	53542539,53543968,53545161,53546592,53546825,53547809	0.500000
suprapubic_skin_female_adult_53_years	chr7	99410041	99410074	99410041	+	High_confidence	9	9	27	1.506319	4.403856	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.740741
suprapubic_skin_female_adult_53_years	chr15	32613831	32613833	32613832	+	High_confidence	3	5	7	0.390527	2.584963	chr15	32613860	32614055	LINE|CR1|L3	+	chr15	32613732	32615111	AC123768.2|ENST00000500941.2	+	32613732,32614108,32614739	32613998,32614202,32615111	0.857143
suprapubic_skin_female_adult_53_years	chr10	86974613	86974616	86974613	-	High_confidence	4	5	11	0.613686	2.845351	chr10	86974596	86974877	LINE|L1|L1M7	-	chr10	86965738	86974801	STRG.92171.10	-	86965738,86969041	86966237,86974801	1.000000
suprapubic_skin_female_adult_53_years	chr11	65431195	65431484	65431374	+	RAMPAGE_only	41	41	347	19.358990	6.437156	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65423637	65444557	STRG.99047.6	+	65423637,65437100	65437047,65444557	0.994236
suprapubic_skin_female_adult_53_years	chr15	90467511	90467517	90467511	+	RAMPAGE_only	5	5	9	0.502106	2.725481	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.555556
suprapubic_skin_female_adult_53_years	chr3	190319102	190319336	190319168	-	RAMPAGE_only	30	38	196	10.934761	6.127346	chr3	190318957	190319138	LINE|CR1|L3b	-	chr3	190305700	190322475	STRG.38883.2	-	190305700,190310168,190312871	190308439,190310253,190322475	0.989796
suprapubic_skin_female_adult_53_years	chr22	26839786	26839811	26839810	+	RAMPAGE_only	10	10	22	1.227371	3.261044	chr22	26839722	26839858	SINE|Alu|AluJo	+	chr22	26838664	26840810	STRG.149891.1	+	26838664	26840810	0.954545
suprapubic_skin_female_adult_53_years	chr21	37084076	37084125	37084096	+	High_confidence	4	5	18	1.004213	3.794653	chr21	37083879	37084118	DNA|hAT-Charlie|MER113B	+	chr21	37083625	37093402	TTC3|ENST00000484047.5	+	37083625,37087246,37087832,37088798,37090232,37091292,37093308	37084331,37087401,37088346,37088886,37090286,37091626,37093402	1.000000
suprapubic_skin_female_adult_53_years	chr10	116929848	116929895	116929848	-	RAMPAGE_only	3	3	13	0.725265	3.546594	chr10	116929745	116929837	LINE|L2|L2b	-	chr10	116884796	116974170	SHTN1|ENST00000497044.5	-	116884796,116901764,116906626,116911789,116915374,116921433,116927791,116929848,116940465,116944923,116948915,116951908,116954041,116960135,116968651,116973855	116886566,116901957,116906747,116911843,116915484,116921516,116927891,116930002,116940612,116945018,116948997,116952006,116954210,116960230,116968712,116974170	1.000000
suprapubic_skin_female_adult_53_years	chrX	53220846	53220898	53220877	-	RAMPAGE_only	6	6	26	1.450529	4.163856	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	0.923077
suprapubic_skin_female_adult_53_years	chr7	64893454	64893455	64893454	+	RAMPAGE_only	7	11	11	0.613686	3.277613	chr7	64893495	64893615	LINE|L2|L2c	+	chr7	64882512	64929257	STRG.68419.2	+	64882512,64893411,64893549,64893747,64897347,64917029,64917580,64918196,64927653	64882785,64893456,64893638,64893897,64898054,64917118,64917707,64918292,64929257	1.000000
suprapubic_skin_female_adult_53_years	chr10	60871821	60871879	60871851	-	High_confidence	2	2	16	0.892634	3.506891	chr10	60871677	60871885	SINE|MIR|MIRb	-	chr10	60871173	60871667	RHOBTB1|ENST00000496237.1	-	60871173,60871443	60871325,60871667	0.812500
suprapubic_skin_female_adult_53_years	chr2	112908505	112908506	112908505	-	RAMPAGE_only	9	10	13	0.725265	3.546594	chr2	112908457	112908922	LTR|ERV1|LTR12F	-	chr2	112885587	112898652	STRG.21376.1	-	112885587,112889607,112890981,112898443	112885968,112889718,112891082,112898652	0.692308
suprapubic_skin_female_adult_53_years	chr2	234888569	234888583	234888582	-	High_confidence	5	5	9	0.502106	2.947703	chr2	234888389	234894419	LINE|L1|L1PA2	+	chr2	234887368	234888526	AC010148.1|ENST00000434572.1	-	234887368,234888279	234887817,234888526	0.888889
suprapubic_skin_female_adult_53_years	chr1	33021454	33021458	33021457	-	RAMPAGE_only	8	10	18	1.004213	3.725481	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.944444
suprapubic_skin_female_adult_53_years	chr9	37603212	37603297	37603230	+	High_confidence	31	34	135	7.531595	6.046598	chr9	37603152	37603302	SINE|MIR|MIR3	+	chr9	37603055	37711464	STRG.82595.3	+	37603055,37623239,37692637,37707415,37708398,37711349	37603339,37623320,37692742,37707573,37708501,37711464	0.777778
suprapubic_skin_female_adult_53_years	chr17	69314704	69314705	69314704	-	High_confidence	18	18	25	1.394740	4.053509	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	0.920000
suprapubic_skin_female_adult_53_years	chr11	65430479	65430791	65430775	+	RAMPAGE_only	128	181	1595	88.984406	6.120574	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65423637	65444557	STRG.99047.6	+	65423637,65437100	65437047,65444557	0.996238
suprapubic_skin_female_adult_53_years	chr2	127225997	127226043	127226042	-	High_confidence	10	15	32	1.785267	4.298069	chr2	127225836	127226042	SINE|MIR|MIR	-	chr2	127224681	127226073	STRG.21817.2	-	127224681	127226073	0.843750
suprapubic_skin_female_adult_53_years	chr19	51886826	51886827	51886826	-	RAMPAGE_only	10	10	15	0.836844	3.456565	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51878400	51887889	ZNF577|ENST00000638538.1	-	51878400,51880322,51880678,51886115,51886820,51887831	51878515,51880401,51880877,51886145,51886912,51887889	0.666667
suprapubic_skin_female_adult_53_years	chr17	43508427	43508443	43508427	+	RAMPAGE_only	6	6	15	0.836844	3.521641	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	0.933333
suprapubic_skin_female_adult_53_years	chr11	77175226	77175260	77175226	+	High_confidence	4	4	11	0.613686	3.277613	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
suprapubic_skin_female_adult_53_years	chr2	54830701	54830705	54830704	-	High_confidence	5	6	9	0.502106	2.947703	chr2	54830230	54831249	LINE|RTE-X|L4_A_Mam	-	chr2	54814866	54830688	STRG.18017.1	-	54814866,54820589,54829499,54830394	54815363,54820686,54829796,54830688	0.888889
suprapubic_skin_female_adult_53_years	chr12	124355445	124355448	124355447	-	RAMPAGE_only	6	9	11	0.613686	3.121928	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124324415	124422554	NCOR2|ENST00000356219.7	-	124324415,124326190,124327408,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124398118,124400500,124402403,124419956,124422500	124325583,124326370,124327633,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362297,124363799,124372610,124374463,124378384,124385887,124398181,124400673,124402561,124420055,124422554	0.909091
suprapubic_skin_female_adult_53_years	chr16	89904102	89904147	89904146	+	RAMPAGE_only	3	3	13	0.725265	3.238901	chr16	89904174	89904222	LINE|CR1|L3	+	chr16	89895989	89911350	TCF25|ENST00000570116.6	+	89895989,89898556,89898766,89900634,89904117,89906193,89907242,89910590,89911079	89896083,89898649,89898872,89900794,89905096,89906284,89907322,89910663,89911350	0.846154
suprapubic_skin_female_adult_53_years	chr3	136991823	136991824	136991823	+	RAMPAGE_only	10	10	15	0.836844	3.807355	chr3	136991603	136991909	SINE|Alu|AluSx1	-	chr3	136980473	137011079	IL20RB|ENST00000475972.1	+	136980473,136982159,136986693,136989440,136991937,136995413,137010112	136980592,136982350,136986784,136989565,136992088,136995556,137011079	0.800000
suprapubic_skin_female_adult_53_years	chr17	31993976	31993994	31993993	+	High_confidence	2	2	6	0.334738	2.584963	chr17	31994036	31994094	LINE|L1|L1MA2	+	chr17	31994352	31999376	SUZ12|ENST00000578106.1	+	31994352,31995563,31996797,31998657	31994721,31995762,31996877,31999376	1.000000
suprapubic_skin_female_adult_53_years	chr12	5121949	5121986	5121976	+	High_confidence	4	7	22	1.227371	4.004886	chr12	5116426	5122428	LINE|L1|L1PA2	-	chr12	5121979	5172085	STRG.102530.1	+	5121979,5160306,5169806,5171808	5122484,5160385,5169879,5172085	0.863636
suprapubic_skin_female_adult_53_years	chr6	56636796	56636822	56636821	-	RAMPAGE_only	4	5	9	0.502106	2.750000	chr6	56636799	56637113	SINE|Alu|AluSq2	+	chr6	56603836	56642788	DST|ENST00000439203.5	-	56603836,56610426,56611507,56614355,56624529,56625156,56627203,56627998,56629249,56630244,56631210,56631882,56632853,56634131,56634461,56634800,56635588,56636556,56639258,56639449,56639695,56639928,56640142,56641946,56642409,56642621	56609344,56610562,56611596,56614484,56624628,56625264,56627287,56628161,56629443,56630383,56631389,56632040,56633037,56634258,56634616,56634953,56635714,56636652,56639363,56639611,56639773,56640057,56640605,56642101,56642503,56642788	0.888889
suprapubic_skin_female_adult_53_years	chr16	67434897	67434923	67434897	+	RAMPAGE_only	3	3	10	0.557896	2.646439	chr16	67434746	67435054	SINE|Alu|AluSg	+	chr16	67431365	67436134	STRG.127637.3	+	67431365,67435956	67435840,67436134	0.900000
suprapubic_skin_female_adult_53_years	chrX	73841834	73841877	73841862	-	High_confidence	8	8	31	1.729477	3.557931	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	1.000000
suprapubic_skin_female_adult_53_years	chr5	34244667	34244682	34244681	-	High_confidence	3	3	7	0.390527	2.521641	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34164697	34245209	STRG.48547.5	-	34164697,34175821,34179012,34182679,34218294,34244615	34175537,34175957,34179097,34182867,34218450,34245209	1.000000
suprapubic_skin_female_adult_53_years	chr17	2975599	2975618	2975617	+	RAMPAGE_only	3	3	7	0.390527	2.521641	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2991344	3008090	RAP1GAP2|ENST00000574515.1	+	2991344,2995336,2998220,3005340,3005954,3008010	2991397,2995466,2998376,3005440,3006041,3008090	0.714286
suprapubic_skin_female_adult_53_years	chr15	75396567	75396588	75396567	-	RAMPAGE_only	3	3	8	0.446317	2.750000	chr15	75396541	75396779	SINE|MIR|MIR	+	chr15	75369378	75451585	SIN3A|NM_015477.2	-	75369378,75375664,75380628,75381612,75384263,75389651,75392241,75394679,75396257,75400039,75400729,75401851,75407054,75409835,75410133,75411491,75412762,75414204,75422646,75430186,75451359	75372209,75375872,75380723,75381705,75384437,75389821,75392815,75394863,75396496,75400156,75400940,75401970,75407144,75409991,75410286,75411743,75413045,75414311,75422823,75430408,75451585	1.000000
suprapubic_skin_female_adult_53_years	chr1	7777052	7777054	7777052	+	High_confidence	3	5	7	0.390527	2.521641	chr1	7776816	7777110	SINE|Alu|AluSx1	-	chr1	7777096	7778169	VAMP3|ENST00000487194.1	+	7777096,7778117	7777318,7778169	0.714286
suprapubic_skin_female_adult_53_years	chr2	201166513	201166723	201166598	+	RAMPAGE_only	14	14	169	9.428442	4.887410	chr2	201165587	201166984	Retroposon|SVA|SVA_A	-	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	1.000000
suprapubic_skin_female_adult_53_years	chr9	72363506	72363515	72363506	-	RAMPAGE_only	5	5	9	0.502106	2.750000	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72360437	72364976	STRG.83803.11	-	72360437,72364695	72363606,72364976	0.888889
suprapubic_skin_female_adult_53_years	chr17	16040742	16040779	16040742	-	High_confidence	6	6	13	0.725265	3.084963	chr17	16040648	16040699	SINE|Alu|AluJb	-	chr17	16032432	16040659	NCOR1|ENST00000582565.1	-	16032432,16034764,16039432,16040440	16032483,16034944,16039654,16040659	0.923077
suprapubic_skin_female_adult_53_years	chr3	188947214	188947237	188947236	+	High_confidence	9	10	32	1.785267	4.241729	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.656250
suprapubic_skin_female_adult_53_years	chr16	71922241	71922268	71922267	+	High_confidence	6	6	19	1.060002	3.787144	chr16	71922240	71922438	LTR|ERVL|LTR16A	+	chr16	71922626	71928049	IST1|ENST00000536027.1	+	71922626,71923287,71924090,71924768,71927613	71922680,71923380,71924281,71924817,71928049	0.578947
suprapubic_skin_female_adult_53_years	chr8	61647007	61647015	61647007	-	High_confidence	5	5	11	0.613686	2.846439	chr8	61646951	61647212	LINE|L2|L2a	+	chr8	61626140	61646872	ASPH|ENST00000519678.5	-	61626140,61633682,61637946,61642887,61643385,61643944,61644599,61646749	61626280,61633727,61638003,61642920,61643433,61644001,61644632,61646872	0.818182
suprapubic_skin_female_adult_53_years	chr11	120303046	120303291	120303046	+	RAMPAGE_only	18	18	303	16.904248	6.260347	chr11	120302881	120303075	DNA|hAT-Tip100|MER91A	-	chr11	120300902	120304330	POU2F3|ENST00000606153.1	+	120300902	120304330	1.000000
suprapubic_skin_female_adult_53_years	chr9	86326424	86326425	86326424	-	High_confidence	6	6	8	0.446317	2.750000	chr9	86326208	86326466	SINE|MIR|MIR	+	chr9	86294971	86325606	STRG.84495.6	-	86294971,86301275,86303085,86304855,86305191,86308428,86309211,86309462,86309927,86310705,86317218,86318957,86319583,86322324,86322872	86299272,86301601,86303201,86304947,86305239,86308606,86309289,86309576,86310017,86310809,86317276,86319058,86319670,86322475,86325606	0.875000
suprapubic_skin_female_adult_53_years	chr9	133276665	133276693	133276692	-	RAMPAGE_only	4	4	11	0.613686	2.921928	chr9	133276496	133276806	LINE|L1|L1MB3	+	chr9	133257922	133275214	STRG.87702.5	-	133257922,133259818,133275161	133258132,133259866,133275214	0.636364
suprapubic_skin_female_adult_53_years	chr19	46733253	46733284	46733283	-	High_confidence	3	3	6	0.334738	2.584963	chr19	46733275	46733512	LINE|L1|L1MC	+	chr19	46727906	46733449	STRN4|ENST00000594847.6	-	46727906,46728617,46730731,46733038	46728007,46728777,46730873,46733449	1.000000
suprapubic_skin_female_adult_53_years	chr17	47067498	47067518	47067498	-	High_confidence	41	44	160	8.926335	5.608071	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.950000
suprapubic_skin_female_adult_53_years	chr19	9621528	9621608	9621591	+	High_confidence	9	9	56	3.124217	4.897193	chr19	9621594	9621665	SINE|Alu|FLAM_C	+	chr19	9621518	9632651	ZNF561-AS1|ENST00000591056.1	+	9621518,9632227	9621645,9632651	0.714286
suprapubic_skin_female_adult_53_years	chrX	107155899	107155965	107155947	-	RAMPAGE_only	4	4	23	1.283161	4.175736	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.913043
suprapubic_skin_female_adult_53_years	chr7	112788233	112788307	112788268	-	RAMPAGE_only	9	9	42	2.343163	4.487468	chr7	112788031	112788293	LINE|L2|L2b	+	chr7	112762381	112790379	STRG.71641.4	-	112762381,112772780,112775175,112777922	112767744,112773055,112777886,112790379	0.928571
suprapubic_skin_female_adult_53_years	chr13	102667847	102667863	102667847	+	High_confidence	6	6	11	0.613686	3.121928	chr13	102667823	102668345	LTR|ERVK|LTR22E	-	chr13	102667436	102668891	STRG.112282.10	+	102667436	102668891	0.818182
suprapubic_skin_female_adult_53_years	chr17	32684271	32684272	32684271	-	High_confidence	15	15	20	1.115792	3.511085	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32653863	32684284	MYO1D|ENST00000582217.1	-	32653863,32654476,32659114,32684174	32653947,32654621,32659338,32684284	0.750000
suprapubic_skin_female_adult_53_years	chr14	92049752	92049775	92049758	-	High_confidence	3	3	8	0.446317	2.521641	chr14	92049241	92049745	LTR|ERV1|HERVH-int	-	chr14	92044797	92049762	ATXN3|ENST00000642896.1	-	92044797,92047895,92049602	92044958,92047997,92049762	0.875000
suprapubic_skin_female_adult_53_years	chr6	6745262	6745263	6745262	-	High_confidence	16	16	17	0.948423	3.625000	chr6	6744950	6746228	LTR|ERV1|LTR12E	-	chr6	6710880	6745253	STRG.56822.1	-	6710880,6711696,6744936	6710981,6711858,6745253	0.705882
suprapubic_skin_female_adult_53_years	chr16	4483680	4483681	4483680	+	RAMPAGE_only	5	6	7	0.390527	2.521641	chr16	4483607	4483911	SINE|Alu|AluSz	-	chr16	4476458	4508197	HMOX2|ENST00000570445.5	+	4476458,4483636,4505483,4506894,4507712	4476487,4483754,4505610,4507012,4508197	1.000000
suprapubic_skin_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	397	474	1184	66.054882	5.391772	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.926520
suprapubic_skin_female_adult_53_years	chr1	28893526	28893546	28893526	+	High_confidence	1	1	6	0.334738	2.584963	chr1	28893412	28893548	LINE|L2|L2b	+	chr1	28893370	29065163	EPB41|ENST00000646260.1	+	28893370,28987430,28993329,28997214,29011864,29015691,29018223,29030399,29033092,29035825,29039253,29053103,29064981	28893837,28987905,28993542,28997319,29011907,29015767,29018442,29030487,29033245,29035923,29039426,29053312,29065163	1.000000
suprapubic_skin_female_adult_53_years	chr12	7111446	7111505	7111504	+	RAMPAGE_only	7	7	25	1.394740	4.183465	chr12	7111409	7111556	SINE|Alu|AluJb	+	chr12	7108570	7135518	STRG.102730.3	+	7108570,7110297,7111024,7112006,7115129,7115385,7118898,7119499,7120505,7127587,7129094,7133023,7133572,7135326	7108947,7110572,7111606,7112064,7115219,7118677,7118944,7119553,7120625,7129064,7130712,7133146,7133768,7135518	0.880000
suprapubic_skin_female_adult_53_years	chr1	52911953	52911960	52911959	-	High_confidence	8	12	19	1.060002	4.037401	chr1	52911855	52912001	SINE|MIR|MIRc	+	chr1	52907838	52911888	ECHDC2|ENST00000492992.1	-	52907838,52911565,52911722	52907954,52911653,52911888	0.526316
suprapubic_skin_female_adult_53_years	chr5	126594191	126594207	126594191	-	High_confidence	2	2	9	0.502106	2.725481	chr5	126594110	126594228	LINE|L2|L2b	-	chr5	126568039	126594318	ALDH7A1|ENST00000511266.6	-	126568039,126570781,126575419,126577078,126582850,126583931,126592663,126593350	126568356,126570859,126575464,126577211,126582974,126584012,126592729,126594318	1.000000
suprapubic_skin_female_adult_53_years	chr2	159217327	159217347	159217346	+	RAMPAGE_only	9	9	25	1.394740	3.431413	chr2	159216979	159217432	LTR|ERVL-MaLR|MLT1G1	-	chr2	159199017	159232655	TANC1|ENST00000470074.1	+	159199017,159217496,159219237,159224231,159225687,159227818,159228795,159229577	159199053,159217630,159219867,159224364,159225779,159227965,159228896,159232655	0.880000
suprapubic_skin_female_adult_53_years	chr12	51985113	51985128	51985127	+	RAMPAGE_only	3	3	7	0.390527	2.584963	chr12	51984966	51985156	SINE|MIR|MIR	-	chr12	51984034	51991992	STRG.105170.5	+	51984034,51985191,51991862	51984166,51986942,51991992	0.714286
suprapubic_skin_female_adult_53_years	chr10	88813033	88813041	88813040	+	High_confidence	4	5	8	0.446317	2.807355	chr10	88812908	88813047	SINE|MIR|MIRb	-	chr10	88812662	88822863	STRG.92438.4	+	88812662,88815087,88815431,88816815,88817824,88820231	88814639,88815224,88815503,88816887,88817896,88822863	0.750000
suprapubic_skin_female_adult_53_years	chr14	39158819	39158824	39158819	-	RAMPAGE_only	5	7	10	0.557896	2.646439	chr14	39158511	39158819	SINE|Alu|AluJb	-	chr14	39147810	39170532	TRAPPC6B|ENST00000469361.5	-	39147810,39151745,39154210,39158284,39170014	39150381,39151839,39154294,39159550,39170532	1.000000
suprapubic_skin_female_adult_53_years	chr9	37603103	37603108	37603107	+	High_confidence	3	3	8	0.446317	3.000000	chr9	37603152	37603302	SINE|MIR|MIR3	+	chr9	37603055	37711464	STRG.82595.3	+	37603055,37623239,37692637,37707415,37708398,37711349	37603339,37623320,37692742,37707573,37708501,37711464	0.750000
suprapubic_skin_female_adult_53_years	chr17	13940701	13940702	13940701	-	RAMPAGE_only	4	4	6	0.334738	2.584963	chr17	13940368	13940765	LTR|ERVL-MaLR|MLT1J	-	chr17	13776831	13892839	COX10-AS1|ENST00000577798.6	-	13776831,13790268,13865078,13880301,13892724	13777349,13790313,13865266,13880371,13892839	0.500000
suprapubic_skin_female_adult_53_years	chr10	27121389	27121417	27121389	-	RAMPAGE_only	2	2	8	0.446317	2.521641	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	0.625000
suprapubic_skin_female_adult_53_years	chr11	62600186	62600242	62600241	-	High_confidence	8	8	36	2.008425	4.957854	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.500000
suprapubic_skin_female_adult_53_years	chr15	99621022	99621047	99621022	+	RAMPAGE_only	4	4	18	1.004213	3.836592	chr15	99620843	99621144	SINE|Alu|AluSx1	-	chr15	99632977	99716488	MEF2A|NM_001130928.2	+	99632977,99671322,99674392,99675398,99690240,99706728,99710633,99712389	99633173,99671454,99674612,99675458,99690428,99706855,99710760,99716488	0.722222
suprapubic_skin_female_adult_53_years	chr15	57451562	57451569	57451562	+	RAMPAGE_only	3	3	14	0.781054	3.238901	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.928571
suprapubic_skin_female_adult_53_years	chr5	141646116	141646255	141646254	-	High_confidence	11	11	162	9.037915	4.884859	chr5	141646242	141646475	SINE|MIR|MIR	-	chr5	141644629	141646364	FCHSD1|ENST00000518499.1	-	141644629,141644858,141645019,141645770,141646086	141644690,141644942,141645148,141645932,141646364	0.975309
suprapubic_skin_female_adult_53_years	chr19	55677173	55677174	55677173	+	High_confidence	12	12	14	0.781054	3.521641	chr19	55677165	55677362	SINE|MIR|MIR	+	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	1.000000
suprapubic_skin_female_adult_53_years	chr15	42148548	42148616	42148615	-	RAMPAGE_only	31	31	62	3.458955	5.267211	chr15	42148393	42148630	DNA|hAT-Charlie|MER20	-	chr15	42146674	42156609	STRG.120304.5	-	42146674,42147625,42150103,42150372,42150607,42153619,42154091,42154321,42155516,42156438	42147346,42149848,42150141,42150486,42153342,42153660,42154220,42154458,42155589,42156609	0.935484
suprapubic_skin_female_adult_53_years	chr9	121313947	121314021	121314002	+	RAMPAGE_only	20	20	138	7.698964	5.645476	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.985507
suprapubic_skin_female_adult_53_years	chr13	18990725	18990737	18990736	-	High_confidence	7	8	12	0.669475	3.277613	chr13	18990528	18990902	LTR|ERVL|MLT2C1	-	chr13	18943116	18991124	STRG.109410.2	-	18943116,18946716,18951669,18952520,18952714,18954927,18955536,18958025,18962126,18963948,18965187,18980130,18983353,18989896,18990568	18945245,18946994,18951829,18952591,18952893,18955043,18955656,18958417,18962274,18964136,18965366,18980283,18983421,18989994,18991124	0.833333
suprapubic_skin_female_adult_53_years	chr10	26765494	26765516	26765494	-	RAMPAGE_only	4	4	16	0.892634	3.189898	chr10	26765419	26765586	DNA|TcMar-Tigger|MER8	-	chr10	26746595	26823290	STRG.89390.8	-	26746595,26751597,26759061,26765217,26768851,26770244,26777064,26823137	26748745,26751783,26759238,26765318,26768992,26770345,26777241,26823290	0.750000
suprapubic_skin_female_adult_53_years	chr20	3866862	3866863	3866862	+	RAMPAGE_only	16	18	20	1.115792	3.821928	chr20	3866894	3867070	SINE|MIR|MIRb	+	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.900000
suprapubic_skin_female_adult_53_years	chr6	35577391	35577428	35577427	-	RAMPAGE_only	3	3	12	0.669475	3.095795	chr6	35577381	35577773	LINE|L1|L1M5	+	chr6	35573584	35688915	FKBP5|ENST00000539068.5	-	35573584,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35688731	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35642843,35688915	0.750000
suprapubic_skin_female_adult_53_years	chr2	72088483	72088488	72088483	-	High_confidence	100	107	201	11.213709	4.692409	chr2	72088481	72089105	LTR|ERV1|MER41B	+	chr2	72087808	72088471	STRG.19765.2	-	72087808	72088471	0.955224
suprapubic_skin_female_adult_53_years	chr17	56904425	56904438	56904425	-	High_confidence	15	15	31	1.729477	4.556088	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56891582	56904488	STRG.132817.5	-	56891582,56895342,56895520,56901418,56904254	56892229,56895441,56899180,56901578,56904488	0.935484
suprapubic_skin_female_adult_53_years	chr16	3679431	3679473	3679472	-	RAMPAGE_only	4	4	17	0.948423	3.452820	chr16	3679242	3679543	DNA|TcMar-Tigger|MER2	+	chr16	3658037	3717526	STRG.125377.2	-	3658037,3658792,3661986,3662881,3663423,3664273,3665970,3671721,3672699,3674338,3675323,3676035,3677497,3685995,3689054,3690826,3717420	3658230,3658865,3662132,3662967,3663562,3664459,3666118,3671791,3672820,3674494,3675397,3676145,3679790,3686136,3689137,3690985,3717526	0.941176
suprapubic_skin_female_adult_53_years	chr8	17895504	17895515	17895504	-	High_confidence	5	5	22	1.227371	4.201841	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.909091
suprapubic_skin_female_adult_53_years	chr19	46173431	46173451	46173431	+	High_confidence	2	2	7	0.390527	2.807355	chr19	46173379	46173779	LTR|ERVL-MaLR|MSTB	-	chr19	46172842	46174618	STRG.141682.10	+	46172842	46174618	0.857143
suprapubic_skin_female_adult_53_years	chr12	50473533	50473534	50473533	+	RAMPAGE_only	5	6	7	0.390527	2.807355	chr12	50473583	50473802	SINE|Alu|AluSx	+	chr12	50440438	50476456	LARP4|ENST00000520064.2	+	50440438,50441589,50453459,50454313,50461134,50462581,50466958,50473414,50473998,50475525	50440549,50441643,50453672,50454417,50461347,50462630,50467120,50473536,50474107,50476456	1.000000
suprapubic_skin_female_adult_53_years	chr6	71291296	71291336	71291296	+	High_confidence	3	3	15	0.836844	3.664498	chr6	71290785	71291650	LINE|L2|L2	-	chr6	71291361	71293612	OGFRL1|ENST00000467503.1	+	71291361,71293292,71293532	71292020,71293379,71293612	0.866667
suprapubic_skin_female_adult_53_years	chr5	69311575	69311576	69311575	-	High_confidence	6	6	8	0.446317	2.750000	chr5	69311369	69311667	SINE|Alu|AluSx	+	chr5	69307153	69311677	STRG.50342.1	-	69307153	69311677	1.000000
suprapubic_skin_female_adult_53_years	chr12	120070779	120070801	120070800	+	RAMPAGE_only	5	8	15	0.836844	3.807355	chr12	120070731	120071029	SINE|Alu|AluSq2	-	chr12	119989868	120090027	STRG.108736.1	+	119989868,119998520,119999598,120061709,120064732,120070912,120071621,120072510,120080886,120089950	119990297,119998736,119999912,120061826,120064879,120071031,120071801,120072729,120081017,120090027	0.933333
suprapubic_skin_female_adult_53_years	chr19	39453053	39453054	39453053	+	RAMPAGE_only	6	6	6	0.334738	2.584963	chr19	39453042	39453062	LINE|L2|L2	-	chr19	39445683	39476670	SUPT5H|ENST00000598725.5	+	39445683,39453355,39457674,39458293,39458817,39459004,39459183,39459558,39459891,39464797,39466479,39466674,39468755,39469078,39469261,39470118,39470376,39471356,39471604,39472408,39472809,39473011,39473202,39473415,39473962,39474233,39474514,39476080,39476255	39445965,39453521,39457740,39458305,39458887,39459073,39459249,39459589,39459960,39465049,39466569,39466745,39468861,39469172,39469398,39470274,39470523,39471503,39471730,39472493,39472929,39473114,39473330,39473521,39474121,39474402,39474718,39476176,39476670	0.500000
suprapubic_skin_female_adult_53_years	chr4	184537517	184537582	184537538	-	High_confidence	6	7	22	1.227371	4.186704	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184536817	184537295	STRG.47202.1	-	184536817	184537295	0.590909
suprapubic_skin_female_adult_53_years	chr1	45522855	45522859	45522858	-	High_confidence	25	25	39	2.175794	4.030436	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.974359
suprapubic_skin_female_adult_53_years	chr21	32610053	32610092	32610091	-	RAMPAGE_only	10	11	22	1.227371	3.484184	chr21	32610050	32610111	LINE|L2|L2a	+	chr21	32578821	32612146	AP000275.2|ENST00000431216.5	-	32578821,32582199,32602271,32603160,32604124,32607648,32609837,32612104	32578831,32582415,32602367,32603292,32604283,32607716,32610005,32612146	0.863636
suprapubic_skin_female_adult_53_years	chr14	21020085	21020100	21020090	-	High_confidence	5	6	16	0.892634	3.452820	chr14	21020013	21020322	SINE|Alu|AluSg4	+	chr14	21017994	21020109	NDRG2|ENST00000557416.5	-	21017994,21018203,21018456,21018626,21018762,21019115,21019638,21019919	21018038,21018239,21018504,21018663,21018814,21019160,21019742,21020109	1.000000
suprapubic_skin_female_adult_53_years	chr15	52100532	52100539	52100538	-	High_confidence	4	6	14	0.781054	3.180833	chr15	52100279	52100861	LTR|ERVL|MER73	-	chr15	52056674	52100523	AC023906.5|ENST00000558607.1	-	52056674,52100469	52057255,52100523	0.928571
suprapubic_skin_female_adult_53_years	chr12	118139096	118139097	118139096	+	High_confidence	6	6	6	0.334738	2.584963	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.833333
suprapubic_skin_female_adult_53_years	chr19	17935189	17935191	17935189	+	High_confidence	4	6	8	0.446317	2.521641	chr19	17935211	17935424	LINE|L1|L1MB5	+	chr19	17935095	17943985	CCDC124|NM_138442.3	+	17935095,17936409,17942655,17943260,17943507	17935191,17936579,17942845,17943375,17943985	0.750000
suprapubic_skin_female_adult_53_years	chr15	81323019	81323023	81323019	-	RAMPAGE_only	4	4	9	0.502106	2.947703	chr15	81322962	81323017	LINE|CR1|Plat_L3	-	chr15	81309052	81324125	STARD5|ENST00000302824.6	-	81309052,81318408,81319338,81322407,81322898,81324000	81313403,81318502,81319456,81322540,81322948,81324125	1.000000
suprapubic_skin_female_adult_53_years	chr14	81192622	81192692	81192622	-	RAMPAGE_only	43	43	152	8.480019	5.685499	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.980263
suprapubic_skin_female_adult_53_years	chr5	148094286	148094317	148094286	+	RAMPAGE_only	6	10	25	1.394740	3.463465	chr5	148094012	148094305	SINE|Alu|AluJo	+	chr5	148064002	148095900	STRG.54770.11	+	148064002,148065346,148070322,148072147,148086404,148088541,148089493,148091164,148094353	148064099,148065372,148070450,148072220,148086532,148088605,148089621,148091228,148095900	1.000000
suprapubic_skin_female_adult_53_years	chr14	68882879	68882887	68882879	-	High_confidence	5	5	10	0.557896	2.846439	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	1.000000
suprapubic_skin_female_adult_53_years	chr17	39708216	39708233	39708232	+	High_confidence	6	6	20	1.115792	3.787144	chr17	39708092	39708239	SINE|MIR|MIRc	-	chr17	39707403	39726351	ERBB2|ENST00000583038.5	+	39707403,39709317,39709812,39710085,39710339,39711927,39712321,39715285,39715445,39715739,39717319,39719786,39723318,39723537,39723911,39724725,39725048	39708534,39709452,39709881,39710201,39710481,39712047,39712448,39715359,39715536,39716605,39717480,39719834,39723457,39723660,39724010,39724911,39726351	0.900000
suprapubic_skin_female_adult_53_years	chrX	101499064	101499086	101499064	+	RAMPAGE_only	2	2	7	0.390527	2.521641	chrX	101498232	101500000	LTR|ERVL|HERV16-int	+	chrX	101485474	101533459	ARMCX4|ENST00000354842.4	+	101485474,101486022,101487192,101487607,101488043,101488443,101498144,101504936,101509363,101509589,101511024,101531643,101533083	101485530,101486092,101487272,101487691,101488099,101489315,101499366,101505355,101509427,101509678,101511055,101532012,101533459	1.000000
suprapubic_skin_female_adult_53_years	chr15	41839838	41839869	41839868	+	RAMPAGE_only	5	6	13	0.725265	2.751629	chr15	41839779	41839980	SINE|MIR|MIR	+	chr15	41838812	41844530	PLA2G4B|ENST00000461382.5	+	41838812,41840157,41840523,41840773,41841054,41841230,41842192,41842553,41843675,41844470	41838922,41840230,41840660,41840905,41841095,41841949,41842276,41842591,41843811,41844530	0.769231
suprapubic_skin_female_adult_53_years	chr17	80181350	80181371	80181370	+	RAMPAGE_only	3	3	6	0.334738	2.584963	chr17	80181259	80181390	LTR|ERV1|MER41D	-	chr17	80178507	80209309	CARD14|ENST00000344227.6	+	80178507,80181418,80182652,80183912,80188376,80189752,80190773,80191322,80192502,80195190,80195557,80198098,80198398,80201743,80202179,80203821,80204226,80205034,80205530,80206969,80208137	80178655,80181649,80182790,80184238,80188544,80189872,80190899,80191472,80192619,80195333,80195652,80198162,80198591,80201870,80202420,80203885,80204341,80205205,80205652,80207085,80209309	1.000000
suprapubic_skin_female_adult_53_years	chr5	95509593	95509600	95509593	-	RAMPAGE_only	3	4	8	0.446317	2.807355	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95502902	95516674	TTC37|ENST00000508181.5	-	95502902,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524	95503003,95503938,95506992,95509687,95512618,95513645,95514923,95516409,95516674	0.625000
suprapubic_skin_female_adult_53_years	chr4	69853650	69853825	69853651	-	RAMPAGE_only	13	24	148	8.256860	6.067171	chr4	69853524	69853748	LINE|L2|L2b	+	chr4	69849125	69860145	STRG.42359.10	-	69849125,69857499	69855426,69860145	0.993243
suprapubic_skin_female_adult_53_years	chr1	29165908	29165934	29165933	-	RAMPAGE_only	2	2	7	0.390527	2.584963	chr1	29165912	29166153	SINE|tRNA-RTE|MamSINE1	-	chr1	29154696	29160563	SRSF4|ENST00000497015.5	-	29154696,29159373,29160374	29154910,29159486,29160563	0.571429
suprapubic_skin_female_adult_53_years	chr9	120844779	120844795	120844779	+	High_confidence	4	4	9	0.502106	2.947703	chr9	120844709	120844922	DNA|TcMar-Tigger|Tigger7	+	chr9	120844712	120851524	CUTALP|ENST00000639139.1	+	120844712,120844992,120847293,120850362,120851237	120844899,120845196,120847353,120850657,120851524	0.666667
suprapubic_skin_female_adult_53_years	chr17	81845330	81845357	81845330	-	High_confidence	5	5	24	1.338950	4.220176	chr17	81845321	81845418	SINE|Alu|AluJo	+	chr17	81843491	81845456	P4HB|ENST00000473021.1	-	81843491,81845143	81844092,81845456	0.833333
suprapubic_skin_female_adult_53_years	chr8	27977125	27977126	27977125	-	High_confidence	14	16	16	0.892634	3.875000	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27869920	27977114	STRG.74969.2	-	27869920,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977114	0.750000
suprapubic_skin_female_adult_53_years	chr6	47711332	47711356	47711355	+	RAMPAGE_only	9	9	15	0.836844	3.506891	chr6	47711268	47711560	SINE|Alu|AluSc	-	chr6	47698552	47722017	STRG.59638.3	+	47698552,47707229,47708223,47710734,47713797,47716805,47717291,47718388,47721208	47698794,47707338,47708278,47712608,47715177,47716847,47717351,47718445,47722017	0.933333
suprapubic_skin_female_adult_53_years	chr4	147864738	147864764	147864763	+	RAMPAGE_only	3	4	9	0.502106	2.947703	chr4	147864565	147864786	DNA|hAT-Charlie|MER58A	-	chr4	147860982	148072776	ARHGAP10|ENST00000506054.5	+	147860982,147875020,147879231,147881837,147906637,147909731,147913073,147939824,147946616,147955315,147965023,147966679,148023262,148046891,148063147,148064415,148071992	147866816,147875150,147879338,147881932,147906719,147909777,147913139,147939899,147946704,147955374,147965129,147966839,148023413,148047051,148063300,148064507,148072776	1.000000
suprapubic_skin_female_adult_53_years	chr19	15055072	15055080	15055072	+	High_confidence	8	9	21	1.171582	3.536887	chr19	15054946	15055103	SINE|Alu|AluJb	-	chr19	15054901	15056278	CASP14|ENST00000598738.1	+	15054901,15055429,15055984	15055274,15055533,15056278	0.523810
suprapubic_skin_female_adult_53_years	chr8	27283160	27283161	27283160	-	RAMPAGE_only	7	7	11	0.613686	2.663533	chr8	27283039	27283187	SINE|MIR|MIRc	-	chr8	27277403	27311238	STRG.75003.3	-	27277403,27289161,27290155,27298463,27310800	27288127,27289280,27294310,27298559,27311238	1.000000
suprapubic_skin_female_adult_53_years	chr16	84454680	84454703	84454680	+	RAMPAGE_only	5	5	19	1.060002	3.787144	chr16	84454520	84454746	SINE|MIR|MIRb	-	chr16	84453235	84463730	ATP2C2|ENST00000567892.5	+	84453235,84454817,84459119,84460653,84461713,84461987,84463613	84453371,84454984,84459188,84460801,84461812,84462129,84463730	0.894737
suprapubic_skin_female_adult_53_years	chr11	72821126	72821223	72821176	+	RAMPAGE_only	6	9	54	3.012638	4.826516	chr11	72821118	72821264	SINE|MIR|MIRb	+	chr11	72816744	72823286	STRG.98707.14	+	72816744,72817755,72821198,72822477	72816827,72817855,72822295,72823286	0.981481
suprapubic_skin_female_adult_53_years	chr3	14944971	14944978	14944971	-	RAMPAGE_only	13	13	30	1.673688	3.655046	chr3	14944679	14944972	SINE|Alu|AluSq2	-	chr3	14942778	14947505	FGD5-AS1|NR_046252.1	-	14942778,14947086	14946154,14947505	0.900000
suprapubic_skin_female_adult_53_years	chr11	107441577	107441591	107441577	-	RAMPAGE_only	6	6	17	0.948423	3.454822	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	1.000000
suprapubic_skin_female_adult_53_years	chr7	108060617	108060644	108060630	-	RAMPAGE_only	4	5	13	0.725265	3.700440	chr7	108060454	108061443	LINE|L1|L1MC3	+	chr7	108005815	108063899	STRG.71473.26	-	108005815,108017786,108020599,108029042,108030805,108034207,108037387,108043751,108047907,108049325,108052096,108055631,108063760	108012678,108017872,108020682,108029196,108030979,108034346,108037595,108043896,108048111,108049531,108052257,108062994,108063899	1.000000
suprapubic_skin_female_adult_53_years	chr8	8143575	8143608	8143575	-	RAMPAGE_only	2	3	8	0.446317	2.500000	chr8	8142069	8144889	LTR|ERV1|HERVS71-int	+	chr8	8141364	8146797	STRG.74134.2	-	8141364	8146797	0.625000
suprapubic_skin_female_adult_53_years	chr1	29166821	29166849	29166828	-	RAMPAGE_only	5	5	14	0.781054	3.664498	chr1	29166709	29166813	SINE|MIR|MIRc	-	chr1	29147852	29173494	SRSF4|ENST00000634348.1	-	29147852,29150102,29154695,29159373,29165889,29166728,29168502	29149226,29150192,29154910,29160517,29166064,29166866,29173494	0.785714
suprapubic_skin_female_adult_53_years	chr22	32461639	32461640	32461639	-	RAMPAGE_only	4	4	6	0.334738	2.584963	chr22	32461578	32461771	DNA|hAT|MamRep38	+	chr22	32453333	32464449	BPIFC|ENST00000397450.2	-	32453333,32457262,32461573,32464373	32453503,32457386,32461661,32464449	1.000000
suprapubic_skin_female_adult_53_years	chr9	92670350	92670375	92670374	+	High_confidence	3	3	9	0.502106	2.947703	chr9	92670392	92670512	SINE|MIR|MIRc	+	chr9	92670162	92671101	STRG.84746.1	+	92670162	92671101	0.555556
suprapubic_skin_female_adult_53_years	chr3	14132403	14132404	14132403	+	RAMPAGE_only	4	4	6	0.334738	2.584963	chr3	14132226	14132423	LINE|CR1|L3	+	chr3	14125014	14143679	STRG.30010.5	+	14125014,14129411,14130886,14131579,14132545,14132865,14133738,14135157,14141592	14129085,14129561,14130956,14131674,14132595,14132935,14134891,14139297,14143679	0.833333
suprapubic_skin_female_adult_53_years	chr10	5768451	5768456	5768451	-	High_confidence	2	2	6	0.334738	2.584963	chr10	5768371	5769005	LINE|L1|L1MB3	+	chr10	5765228	5769389	GDI2|ENST00000479928.1	-	5765228,5766240,5768212	5766152,5766638,5769389	0.833333
suprapubic_skin_female_adult_53_years	chr19	58312242	58312243	58312242	+	RAMPAGE_only	4	5	6	0.334738	2.584963	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.666667
suprapubic_skin_female_adult_53_years	chr17	59620063	59620092	59620063	+	High_confidence	21	21	57	3.180007	4.749128	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.894737
suprapubic_skin_female_adult_53_years	chr12	3764818	3764819	3764818	-	High_confidence	16	19	19	1.060002	3.947703	chr12	3764482	3765028	LTR|ERVL|MLT2A2	-	chr12	3612904	3764819	STRG.102461.2	-	3612904,3616953,3619270,3627435,3627624,3633603,3638123,3641731,3644594,3648541,3654211,3656310,3659563,3673445,3678914,3680237,3696771,3713236,3732941,3764564	3615439,3617030,3619372,3627550,3627706,3633736,3638457,3641838,3644640,3648613,3654399,3656406,3659654,3673592,3679098,3680349,3697035,3713317,3733210,3764819	0.894737
suprapubic_skin_female_adult_53_years	chr16	74485822	74485872	74485833	-	RAMPAGE_only	6	6	19	1.060002	3.725481	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	0.894737
suprapubic_skin_female_adult_53_years	chr3	52482487	52482667	52482666	+	RAMPAGE_only	7	7	82	4.574747	5.291261	chr3	52482568	52482694	DNA|TcMar-Tc2|Kanga1c	+	chr3	52455616	52493071	STRG.32331.2	+	52455616,52457842,52458661,52470858,52471813,52472302,52473733,52476446,52477573,52478096,52478374,52479748,52480183,52480878,52485777,52487195,52489335,52490074,52490704,52491351,52491871	52455734,52457926,52458844,52470907,52471977,52472398,52473829,52476599,52477642,52478282,52478577,52479862,52480295,52484637,52485827,52488605,52489678,52490231,52490833,52491513,52493071	0.987805
suprapubic_skin_female_adult_53_years	chr16	71924408	71924482	71924408	+	High_confidence	7	7	32	1.785267	4.030639	chr16	71924327	71924591	SINE|Alu|AluJb	+	chr16	71924407	71927838	IST1|ENST00000541180.1	+	71924407,71927613	71924817,71927838	0.968750
suprapubic_skin_female_adult_53_years	chr6	77369106	77369167	77369106	-	High_confidence	16	16	94	5.244222	5.578609	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77150538	77369159	STRG.60921.1	-	77150538,77151818,77271339,77273026,77350621,77368885	77151280,77151974,77271493,77273307,77350734,77369159	0.882979
suprapubic_skin_female_adult_53_years	chr2	233691709	233691710	233691709	+	High_confidence	8	8	10	0.557896	3.169925	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233691160	233696346	STRG.27928.1	+	233691160	233696346	0.800000
suprapubic_skin_female_adult_53_years	chr9	33262159	33262230	33262225	-	RAMPAGE_only	4	4	34	1.896846	4.572469	chr9	33262201	33262256	LINE|L2|L2a	+	chr9	33257719	33261119	BAG1|ENST00000473464.2	-	33257719,33258919,33261086	33258123,33259033,33261119	0.794118
suprapubic_skin_female_adult_53_years	chr8	142344379	142344380	142344379	-	RAMPAGE_only	11	11	13	0.725265	3.700440	chr8	142344146	142344350	DNA|DNA|UCON8	-	chr8	142212166	142354763	TSNARE1|ENST00000520166.5	-	142212166,142229472,142274780,142284412,142300485,142314383,142315002,142318543,142330900,142331753,142343965,142345742,142354636	142212313,142229579,142274863,142284485,142300647,142314440,142315092,142318634,142330970,142331831,142344472,142345892,142354763	0.923077
suprapubic_skin_female_adult_53_years	chr7	140460028	140460046	140460028	-	RAMPAGE_only	5	5	12	0.669475	3.095795	chr7	140459964	140460267	SINE|Alu|AluSx	+	chr7	140459177	140478503	MKRN1|ENST00000494939.1	-	140459177,140459706,140471882,140478134	140459233,140459936,140472011,140478503	0.500000
suprapubic_skin_female_adult_53_years	chr1	109669867	109669868	109669867	+	High_confidence	7	7	7	0.390527	2.807355	chr1	109669639	109670357	LTR|ERV1|LTR12_	-	chr1	109669546	109674864	GSTM2|ENST00000472225.6	+	109669546,109670174,109671286,109671472,109674746	109670063,109670234,109671382,109671583,109674864	0.714286
suprapubic_skin_female_adult_53_years	chr12	46266514	46266535	46266514	-	High_confidence	2	3	8	0.446317	2.750000	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.625000
suprapubic_skin_female_adult_53_years	chr22	23705439	23705466	23705439	-	RAMPAGE_only	5	5	15	0.836844	3.664498	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.800000
suprapubic_skin_female_adult_53_years	chr1	17624206	17624221	17624220	+	RAMPAGE_only	5	5	12	0.669475	3.095795	chr1	17624115	17624252	SINE|MIR|MIR3	+	chr1	17618315	17697868	ARHGEF10L|ENST00000375408.7	+	17618315,17619338,17621863,17622995,17624386,17625955,17627329,17632320,17634834,17637887,17638561,17640201,17648553,17654635,17655878,17656553,17664446,17687572,17695157,17696847	17618522,17619445,17621941,17623175,17624503,17626048,17627503,17632466,17635016,17638003,17638689,17640302,17648675,17654722,17656102,17656708,17664595,17687747,17695280,17697868	0.500000
suprapubic_skin_female_adult_53_years	chr11	4127225	4127248	4127247	+	RAMPAGE_only	3	5	10	0.557896	3.121928	chr11	4127295	4127736	LTR|ERVL-MaLR|MLT1D	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.800000
suprapubic_skin_female_adult_53_years	chr17	7576341	7576375	7576374	+	High_confidence	4	4	22	1.227371	3.606937	chr17	7576304	7576490	SINE|MIR|MIR	+	chr17	7576531	7578631	EIF4A1|ENST00000583389.5	+	7576531,7577055,7577343,7577568,7577826,7578226,7578341	7576692,7577165,7577487,7577706,7577916,7578244,7578631	0.590909
suprapubic_skin_female_adult_53_years	chr10	104059558	104059580	104059579	-	RAMPAGE_only	5	5	15	0.836844	3.640224	chr10	104059418	104059566	DNA|hAT-Charlie|MER5A1	-	chr10	104031285	104080673	COL17A1|ENST00000369733.8	-	104031285,104032673,104032905,104033237,104033944,104034620,104035473,104036491,104037044,104037635,104038405,104039070,104040350,104041064,104041302,104041484,104042419,104043500,104043824,104045757,104046746,104047738,104048068,104049408,104050088,104050620,104050847,104051480,104052154,104053030,104053919,104054091,104054980,104055371,104055781,104056974,104058145,104059637,104060118,104061404,104062257,104063746,104064437,104070425,104072031,104073209,104074183,104076300,104077421,104078541,104080621	104032290,104032754,104032968,104033375,104034334,104034767,104035563,104036632,104037113,104037773,104038528,104039121,104040410,104041118,104041344,104041538,104042455,104043581,104043860,104045793,104046773,104047810,104048104,104049471,104050124,104050656,104050901,104051516,104052217,104053135,104053982,104054118,104055007,104055401,104056003,104057172,104058190,104059718,104060280,104061473,104062329,104063818,104064596,104070569,104072079,104073245,104074231,104076429,104077526,104078586,104080673	0.666667
suprapubic_skin_female_adult_53_years	chr20	34369409	34369419	34369418	+	RAMPAGE_only	4	5	11	0.613686	3.321928	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.818182
suprapubic_skin_female_adult_53_years	chr7	2454947	2454952	2454947	+	High_confidence	3	3	7	0.390527	2.584963	chr7	2454918	2455214	SINE|Alu|AluY	-	chr7	2454471	2457182	STRG.65846.2	+	2454471	2457182	0.714286
suprapubic_skin_female_adult_53_years	chr20	44498499	44498545	44498499	-	RAMPAGE_only	9	16	69	3.849482	4.604071	chr20	44498292	44498606	SINE|Alu|AluY	+	chr20	44497430	44504891	STRG.145307.8	-	44497430,44501072,44503814	44500434,44501300,44504891	0.956522
suprapubic_skin_female_adult_53_years	chr1	35177450	35177491	35177475	-	High_confidence	7	7	22	1.227371	3.916127	chr1	35177421	35177635	SINE|Alu|AluJb	-	chr1	35177208	35178136	SFPQ|ENST00000485454.1	-	35177208,35177988	35177399,35178136	0.636364
suprapubic_skin_female_adult_53_years	chr1	6463437	6463479	6463466	-	High_confidence	2	3	10	0.557896	3.169925	chr1	6463444	6463755	SINE|Alu|AluSc8	+	chr1	6461479	6463347	TNFRSF25|ENST00000453260.6	-	6461479,6461993,6462628,6462862	6461762,6462174,6462663,6463347	0.800000
suprapubic_skin_female_adult_53_years	chr9	32989963	32989975	32989974	-	High_confidence	11	13	23	1.283161	4.297079	chr9	32989961	32990147	SINE|MIR|MIRb	+	chr9	32972617	32990088	APTX|ENST00000379817.6	-	32972617,32974457,32984630,32985970,32987543,32988078,32989758	32973652,32974561,32984857,32986030,32987842,32988129,32990088	0.826087
suprapubic_skin_female_adult_53_years	chr4	152412488	152412529	152412488	-	High_confidence	3	5	17	0.948423	3.616875	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
suprapubic_skin_female_adult_53_years	chr8	133254781	133254835	133254781	-	High_confidence	17	17	63	3.514745	5.014079	chr8	133254749	133254865	LINE|L2|L2b	+	chr8	133246626	133254882	NDRG1|ENST00000521664.1	-	133246626,133247874,133248714,133250439,133254538	133246663,133247926,133248771,133250543,133254882	0.793651
suprapubic_skin_female_adult_53_years	chr8	12522764	12522818	12522813	+	RAMPAGE_only	4	4	20	1.115792	4.037401	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12479614	12571403	STRG.74446.3	+	12479614,12530942,12565885	12480935,12531031,12571403	0.650000
suprapubic_skin_female_adult_53_years	chr4	8381675	8381721	8381720	-	RAMPAGE_only	11	15	31	1.729477	4.444188	chr4	8381683	8381862	SINE|MIR|MIR1_Amn	-	chr4	8366711	8397831	STRG.40237.8	-	8366711,8370907,8374977,8381491,8389611,8392332,8394619,8396936	8367080,8370994,8375152,8389286,8389734,8392453,8394742,8397831	0.709677
suprapubic_skin_female_adult_53_years	chr15	63327614	63327691	63327614	-	RAMPAGE_only	22	22	46	2.566321	4.854977	chr15	63327449	63327640	DNA|hAT-Charlie|MER5A	-	chr15	63324706	63381835	STRG.122155.3	-	63324706,63327148,63338818,63340287,63340719,63342001,63345476,63346529,63375657,63381635	63326357,63328130,63338945,63340445,63340783,63342097,63345619,63346709,63375678,63381835	0.978261
suprapubic_skin_female_adult_53_years	chr6	26957016	26957028	26957017	+	High_confidence	5	7	16	0.892634	3.240224	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26956992	27023924	LINC00240|ENST00000606878.1	+	26956992,26968457,27023253	26957183,26968522,27023924	0.750000
suprapubic_skin_female_adult_53_years	chr7	140109576	140109577	140109576	-	High_confidence	4	4	7	0.390527	2.584963	chr7	140109387	140109602	LINE|L1|L1MB3	-	chr7	140104002	140110086	STRG.72757.1	-	140104002	140110086	0.714286
suprapubic_skin_female_adult_53_years	chr18	30992143	30993316	30992143	-	RAMPAGE_only	174	178	3401	189.740416	8.001350	chr18	30991883	30992175	SINE|Alu|AluY	+	chr18	30990007	31042741	DSC3|ENST00000360428.8	-	30990007,30996790,31001617,31004141,31006906,31008015,31008268,31018070,31018665,31022335,31024348,31025759,31029508,31030972,31032191,31042591	30994372,30997048,31001739,31004366,31007131,31008158,31008525,31018256,31018800,31022502,31024493,31025915,31029628,31031172,31032276,31042741	1.000000
suprapubic_skin_female_adult_53_years	chr3	50312747	50312812	50312756	-	High_confidence	24	24	122	6.806331	5.756488	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50302646	50312955	STRG.32202.9	-	50302646,50303787,50309658	50302980,50303953,50312955	1.000000
suprapubic_skin_female_adult_53_years	chr15	63327464	63327489	63327464	-	RAMPAGE_only	4	6	10	0.557896	2.921928	chr15	63327449	63327640	DNA|hAT-Charlie|MER5A	-	chr15	63325979	63331813	CA12|ENST00000560666.1	-	63325979,63327148,63331696	63326357,63327233,63331813	0.700000
suprapubic_skin_female_adult_53_years	chr2	26063890	26063891	26063890	+	RAMPAGE_only	9	9	9	0.502106	2.947703	chr2	26063803	26064055	SINE|Alu|AluSx	-	chr2	26034109	26137454	RAB10|ENST00000264710.4	+	26034109,26098661,26109767,26127143,26127849,26134937	26034735,26098722,26109906,26127233,26127951,26137454	0.666667
suprapubic_skin_female_adult_53_years	chr11	12989541	12989544	12989543	-	High_confidence	9	15	19	1.060002	3.531631	chr11	12989406	12989730	LTR|ERVL-MaLR|THE1D	-	chr11	12961841	12989547	LINC00958|ENST00000527945.2	-	12961841,12965107,12989455	12962763,12965214,12989547	0.526316
suprapubic_skin_female_adult_53_years	chr19	49879172	49879173	49879172	+	High_confidence	9	9	12	0.669475	3.095795	chr19	49879146	49879251	LINE|L2|L2b	-	chr19	49878549	49888748	TBC1D17|ENST00000596243.5	+	49878549,49880278,49881267,49882040,49882241,49882763,49882972,49883650,49884252,49884458,49884658,49887475,49887717,49888230,49888423	49879504,49880402,49881475,49882152,49882400,49882892,49883076,49883745,49884369,49884559,49884758,49887573,49887834,49888317,49888748	0.500000
suprapubic_skin_female_adult_53_years	chr15	89333695	89333773	89333772	-	High_confidence	20	20	38	2.120005	4.388790	chr15	89333757	89333941	SINE|MIR|MIRc	+	chr15	89330207	89333809	POLG|ENST00000650303.1	-	89330207,89333095	89330276,89333809	0.947368
suprapubic_skin_female_adult_53_years	chr3	50184392	50184416	50184392	+	High_confidence	9	9	15	0.836844	3.373557	chr3	50184323	50184529	LINE|L2|L2	-	chr3	50184271	50185465	SEMA3F|ENST00000470737.1	+	50184271,50185442	50184814,50185465	0.866667
suprapubic_skin_female_adult_53_years	chr19	33374471	33374488	33374471	+	High_confidence	6	6	32	1.785267	3.667838	chr19	33374489	33374531	LINE|L2|L2	+	chr19	33373694	33382686	STRG.139907.3	+	33373694,33381244	33380108,33382686	1.000000
suprapubic_skin_female_adult_53_years	chr1	9743885	9743970	9743885	-	RAMPAGE_only	11	11	40	2.231584	4.932138	chr1	9743549	9743856	SINE|Alu|AluJo	-	chr1	9729027	9751581	STRG.620.4	-	9729027,9731205,9731760,9733400,9733971,9734947,9735466,9735884,9743883,9744394,9749460,9749763,9751472	9730705,9731390,9731896,9733546,9734142,9735174,9735615,9741256,9744005,9744643,9749646,9749913,9751581	0.950000
suprapubic_skin_female_adult_53_years	chr2	201115951	201116019	201116013	+	High_confidence	5	5	31	1.729477	4.131300	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.935484
suprapubic_skin_female_adult_53_years	chr14	103778746	103778770	103778746	-	RAMPAGE_only	5	6	12	0.669475	3.418296	chr14	103778558	103778705	SINE|Alu|AluJr	-	chr14	103733194	103797488	PPP1R13B|ENST00000647748.1	-	103733194,103736002,103737693,103738678,103738885,103739823,103741789,103742653,103746372,103749793,103752999,103754069,103757649,103778744,103784794,103797370	103735195,103736202,103737860,103738812,103739023,103740593,103742291,103742823,103746553,103749934,103753196,103754238,103757751,103778821,103784914,103797488	0.666667
suprapubic_skin_female_adult_53_years	chr16	18827349	18827350	18827349	-	High_confidence	24	25	27	1.506319	3.559900	chr16	18827144	18827430	SINE|Alu|AluSx	+	chr16	18812010	18827425	STRG.125969.14	-	18812010,18815174,18815439,18816301,18817290,18819501,18827054	18812127,18815281,18815651,18816529,18817470,18821202,18827425	0.814815
suprapubic_skin_female_adult_53_years	chr22	40032610	40032662	40032661	+	High_confidence	16	17	45	2.510532	4.534066	chr22	40032556	40032862	SINE|Alu|AluYj4	-	chr22	40032331	40036577	LOC100130899|NR_039988.1	+	40032331	40036577	0.822222
suprapubic_skin_female_adult_53_years	chr1	31686487	31686512	31686511	-	RAMPAGE_only	4	4	10	0.557896	3.121928	chr1	31686389	31686479	SINE|MIR|MIR3	-	chr1	31683707	31689501	COL16A1|ENST00000474000.5	-	31683707,31683949,31684522,31684820,31685638,31686090,31686243,31688466,31688860,31689049,31689460	31683748,31684003,31684630,31684856,31685770,31686135,31686279,31688502,31688971,31689085,31689501	0.700000
suprapubic_skin_female_adult_53_years	chr14	64024001	64024019	64024001	+	RAMPAGE_only	3	3	10	0.557896	2.725481	chr14	64023944	64024082	DNA|TcMar-Tigger|Tigger19b	+	chr14	64003023	64049279	SYNE2|ENST00000557005.1	+	64003023,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024911,64025129,64026578,64027483,64029894,64031015,64047999	64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64049279	0.900000
suprapubic_skin_female_adult_53_years	chr1	26284530	26284545	26284538	-	RAMPAGE_only	6	6	14	0.781054	2.873141	chr1	26284514	26284630	SINE|MIR|MIR3	-	chr1	26282304	26298026	UBXN11|ENST00000496466.1	-	26282304,26282648,26282863,26284141,26284361,26285822,26294204,26296918,26297426,26297961	26282569,26282789,26282937,26284281,26285541,26286037,26294331,26296995,26297481,26298026	0.928571
suprapubic_skin_female_adult_53_years	chr1	1655450	1655478	1655477	-	RAMPAGE_only	6	6	28	1.562109	4.378783	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635586	1657563	STRG.169.5	-	1635586,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657255	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657563	0.964286
suprapubic_skin_female_adult_53_years	chr19	11033835	11033838	11033835	+	High_confidence	4	4	8	0.446317	2.500000	chr19	11033706	11034051	SINE|tRNA|LFSINE_Vert	-	chr19	11034122	11066122	SMARCA4|ENST00000586985.2	+	11034122,11034913,11041306,11058254,11058787,11059752,11060044,11065192	11034200,11035132,11041560,11058363,11058889,11059885,11060187,11066122	1.000000
suprapubic_skin_female_adult_53_years	chr5	113105918	113105924	113105923	-	RAMPAGE_only	6	7	17	0.948423	3.750000	chr5	113105908	113106075	DNA|hAT-Charlie|MER5B	+	chr5	113101542	113104625	MCC|ENST00000505604.1	-	113101542,113104191	113101945,113104625	0.764706
suprapubic_skin_female_adult_53_years	chr9	127451200	127451201	127451200	-	High_confidence	4	4	6	0.334738	2.584963	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.833333
suprapubic_skin_female_adult_53_years	chr20	62366953	62366997	62366996	-	High_confidence	3	3	15	0.836844	3.324863	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.933333
suprapubic_skin_female_adult_53_years	chr14	105016039	105016045	105016039	-	RAMPAGE_only	2	2	10	0.557896	2.947703	chr14	105015959	105016174	LTR|ERV1|MER89	+	chr14	105009935	105021060	CDCA4|ENST00000392590.3	-	105009935,105011159,105020998	105010633,105011935,105021060	0.800000
suprapubic_skin_female_adult_53_years	chr5	146228877	146228881	146228880	+	RAMPAGE_only	20	20	32	1.785267	3.941428	chr5	146228592	146228912	SINE|Alu|AluJr	-	chr5	146203599	146289223	RBM27|NM_018989.1	+	146203599,146218984,146223402,146228945,146229716,146230656,146233449,146237297,146251710,146254942,146258448,146260744,146261509,146263490,146267648,146269206,146269419,146270953,146271482,146284621,146285946	146203824,146219103,146223527,146229037,146229910,146230917,146233743,146237432,146251875,146255092,146258593,146260898,146261806,146263631,146267768,146269281,146269584,146271058,146271674,146284732,146289223	1.000000
suprapubic_skin_female_adult_53_years	chr12	119179243	119179256	119179243	+	High_confidence	2	2	6	0.334738	2.584963	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	1.000000
suprapubic_skin_female_adult_53_years	chr1	209789841	209789876	209789875	-	RAMPAGE_only	7	7	19	1.060002	3.836592	chr1	209789857	209790040	DNA|hAT-Charlie|MER3	-	chr1	209785690	209802041	STRG.12060.6	-	209785690,209790494,209792268,209795289,209796347,209801239,209801971	209789785,209791022,209792427,209795418,209796552,209801416,209802041	0.947368
suprapubic_skin_female_adult_53_years	chr19	35497826	35498204	35498177	-	High_confidence	407	414	2238	124.857116	7.799064	chr19	35498132	35498355	SINE|Alu|AluJb	-	chr19	35497219	35497933	DMKN|ENST00000472365.6	-	35497219,35497646	35497538,35497933	0.668007
suprapubic_skin_female_adult_53_years	chr2	222926941	222926942	222926941	+	RAMPAGE_only	9	9	14	0.781054	3.238901	chr2	222926864	222927005	SINE|MIR|MIR3	+	chr2	222918695	222941824	STRG.27488.4	+	222918695,222921279,222922707,222923077,222924455,222927016,222930620,222933165,222934529,222941496	222919202,222921430,222922831,222923149,222924595,222928936,222930812,222933280,222934687,222941824	0.928571
suprapubic_skin_female_adult_53_years	chr19	45393586	45393676	45393675	-	RAMPAGE_only	86	86	128	7.141068	4.566966	chr19	45393592	45393878	SINE|Alu|AluY	+	chr19	45379637	45405038	STRG.141588.10	-	45379637,45382526,45385561,45385823,45386048,45391879,45396167,45396337,45396544,45398004,45398263,45404998	45380228,45382726,45385728,45385957,45386180,45395886,45396259,45396436,45397058,45398147,45398339,45405038	0.984375
suprapubic_skin_female_adult_53_years	chr20	41345546	41345548	41345546	+	RAMPAGE_only	16	25	31	1.729477	4.415061	chr20	41345479	41345635	SINE|MIR|MIR1_Amn	-	chr20	41341092	41358829	STRG.145166.5	+	41341092,41345795,41347551,41348618,41349088,41349773,41350054,41351820,41352059,41352605,41352797,41354644,41354819,41355895,41357039,41357881,41358438,41358721	41341309,41345995,41347647,41348887,41349172,41349894,41350397,41351920,41352220,41352699,41352867,41354737,41354863,41356034,41357447,41358351,41358542,41358829	0.548387
suprapubic_skin_female_adult_53_years	chr7	66703044	66703055	66703054	+	RAMPAGE_only	4	4	8	0.446317	2.750000	chr7	66702967	66703271	SINE|Alu|AluY	-	chr7	66682134	66729334	STRG.68686.10	+	66682134,66700768	66682258,66729334	0.875000
suprapubic_skin_female_adult_53_years	chr18	23576834	23576900	23576863	-	High_confidence	24	27	92	5.132643	5.114413	chr18	23576532	23578195	LTR|ERV1|LTR12C	-	chr18	23573451	23576947	NPC1|ENST00000587223.1	-	23573451,23576480	23573574,23576947	0.989130
suprapubic_skin_female_adult_53_years	chr17	1369710	1369723	1369722	-	RAMPAGE_only	2	2	7	0.390527	2.584963	chr17	1369508	1369695	LINE|L1|L1MB8	-	chr17	1344538	1365058	YWHAE|ENST00000466227.6	-	1344538,1354210,1361929,1364858	1345499,1354347,1362008,1365058	0.714286
suprapubic_skin_female_adult_53_years	chr4	86772446	86772447	86772446	+	RAMPAGE_only	12	13	18	1.004213	4.058814	chr4	86772272	86772573	SINE|Alu|AluSx	+	chr4	86763008	86815149	STRG.43436.10	+	86763008,86764592,86765394,86771170,86774372,86775170,86775441,86780401,86782200,86784464,86785230,86785847,86796873,86799100,86803708,86805278,86807559,86809768,86811045,86814455	86763190,86764724,86770199,86772958,86774531,86775342,86775652,86780472,86782262,86784558,86785368,86785936,86796929,86799204,86803857,86805369,86807897,86809984,86811108,86815149	1.000000
suprapubic_skin_female_adult_53_years	chr17	19281897	19282058	19281970	+	High_confidence	20	21	121	6.750541	5.909050	chr17	19281937	19282036	LINE|L2|L2a	-	chr17	19281954	19335194	EPN2|ENST00000395620.6	+	19281954,19309884,19312051,19313104,19328710,19329560,19331852,19333955	19283714,19309997,19312144,19313279,19328887,19329647,19332068,19335194	0.950413
suprapubic_skin_female_adult_53_years	chr19	48868595	48868617	48868613	-	High_confidence	64	78	266	14.840033	6.671517	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	1.000000
suprapubic_skin_female_adult_53_years	chr21	15824829	15824830	15824829	+	RAMPAGE_only	6	6	9	0.502106	2.725481	chr21	15824607	15824886	SINE|Alu|AluSx1	-	chr21	15730024	15880072	USP25|NM_013396.4	+	15730024,15762890,15765996,15777903,15791501,15799756,15805120,15808808,15811136,15818697,15824038,15824965,15826203,15826976,15830530,15831400,15833347,15842397,15864267,15866265,15870067,15874402,15877795,15878302	15730438,15762968,15766141,15778027,15791664,15799843,15805258,15808885,15811210,15818846,15824166,15825061,15826365,15827203,15830601,15831629,15833548,15842540,15864446,15866344,15870147,15874526,15877991,15880072	1.000000
suprapubic_skin_female_adult_53_years	chr1	1655369	1655422	1655421	-	RAMPAGE_only	18	20	56	3.124217	5.307355	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635586	1657563	STRG.169.5	-	1635586,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657255	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657563	1.000000
suprapubic_skin_female_adult_53_years	chr17	41773080	41773103	41773102	-	RAMPAGE_only	5	5	12	0.669475	3.459432	chr17	41773058	41773139	SINE|MIR|MIRb	-	chr17	41768968	41786712	JUP|ENST00000424457.5	-	41768968,41769417,41771646,41772817,41786587	41769207,41769677,41771862,41772926,41786712	0.500000
suprapubic_skin_female_adult_53_years	chr8	38825311	38825361	38825360	+	RAMPAGE_only	15	15	46	2.566321	4.780742	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38826553	38848132	STRG.75401.7	+	38826553,38836161,38838469,38840223,38842286,38843288,38846698,38847954	38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848132	0.913043
suprapubic_skin_female_adult_53_years	chr19	12773311	12773405	12773392	-	High_confidence	15	16	96	5.355801	4.772005	chr19	12773232	12773546	SINE|Alu|AluJo	-	chr19	12771394	12773253	HOOK2|ENST00000588052.5	-	12771394,12772189,12772612,12772779,12772993	12771477,12772252,12772680,12772912,12773253	1.000000
suprapubic_skin_female_adult_53_years	chr2	71050189	71050221	71050202	+	RAMPAGE_only	10	19	49	2.733690	4.636842	chr2	71048568	71050605	LTR|ERV1|HERVE-int	+	chr2	71055168	71059094	STRG.19697.1	+	71055168,71058913	71056826,71059094	0.836735
suprapubic_skin_female_adult_53_years	chr14	100291506	100291507	100291506	-	RAMPAGE_only	14	15	20	1.115792	3.932138	chr14	100291489	100291554	SINE|MIR|MIR1_Amn	-	chr14	100291115	100296545	SLC25A29|ENST00000554912.1	-	100291115,100293293	100293032,100296545	0.500000
suprapubic_skin_female_adult_53_years	chr11	68180140	68180160	68180140	-	High_confidence	2	3	6	0.334738	2.584963	chr11	68180123	68180214	SINE|MIR|MIRc	+	chr11	68171118	68180165	KMT5B|ENST00000323599.10	-	68171118,68171231,68171542,68173803,68174087,68175017,68180131	68171151,68171251,68171709,68173913,68174210,68175183,68180165	1.000000
suprapubic_skin_female_adult_53_years	chr14	77732706	77732743	77732742	-	RAMPAGE_only	4	4	11	0.613686	2.913977	chr14	77732669	77732959	SINE|Alu|AluSz	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.909091
suprapubic_skin_female_adult_53_years	chr10	84215267	84215635	84215585	+	RAMPAGE_only	13	13	206	11.492657	6.559523	chr10	84215445	84215698	SINE|MIR|MIRc	+	chr10	84212876	84217366	CDHR1|ENST00000459673.1	+	84212876,84214081	84213348,84217366	0.970874
suprapubic_skin_female_adult_53_years	chr9	128921399	128921411	128921399	+	High_confidence	22	25	41	2.287373	4.188331	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.780488
suprapubic_skin_female_adult_53_years	chr9	114394398	114394413	114394412	-	High_confidence	3	3	8	0.446317	2.521641	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	0.875000
suprapubic_skin_female_adult_53_years	chr2	241250226	241250228	241250226	-	High_confidence	13	16	24	1.338950	4.168296	chr2	241250192	241250357	DNA|hAT-Charlie|MER5B	-	chr2	241229223	241250937	HDLBP|ENST00000487169.5	-	241229223,241230758,241233819,241235120,241236614,241238648,241239601,241239900,241242459,241246751,241247055,241248002,241248243,241249840	241230269,241230944,241233963,241235594,241236769,241238787,241239820,241240122,241242678,241246883,241247142,241248116,241248348,241250937	1.000000
suprapubic_skin_female_adult_53_years	chr4	86896653	86896681	86896677	-	RAMPAGE_only	5	5	25	1.394740	3.795089	chr4	86896647	86896934	LINE|L2|L2	+	chr4	86876204	86892422	C4orf36|NM_144645.3	-	86876204,86887757,86888120,86891455,86892182	86876443,86887893,86888275,86891593,86892422	0.680000
suprapubic_skin_female_adult_53_years	chr21	33931146	33931152	33931146	+	High_confidence	4	5	9	0.502106	2.750000	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.888889
suprapubic_skin_female_adult_53_years	chr6	32172646	32172649	32172648	-	High_confidence	6	7	10	0.557896	3.169925	chr6	32172466	32172653	SINE|MIR|MIR	-	chr6	32168211	32173115	AGPAT1|ENST00000395496.5	-	32168211,32169965,32170164,32170424,32170936,32171296,32172937	32169448,32170038,32170260,32170600,32171070,32171505,32173115	0.900000
suprapubic_skin_female_adult_53_years	chr6	129072106	129072107	129072106	+	RAMPAGE_only	10	10	10	0.557896	2.921928	chr6	129071994	129072173	SINE|Alu|AluJb	+	chr6	128883196	129516569	LAMA2|ENST00000421865.2	+	128883196,129049917,129059783,129098172,129143900,129146958,129148978,129154504,129165575,129177705,129190204,129192679,129250111,129252083,129260710,129267105,129270623,129280060,129287846,129291613,129297684,129300735,129312860,129314654,129315475,129315761,129316037,129320537,129328277,129342342,129349297,129353163,129366218,129369891,129383121,129391490,129393044,129401223,129402323,129403820,129427751,129438645,129440815,129443062,129445666,129452987,129454154,129456334,129460199,129464289,129465144,129473213,129475389,129478692,129481262,129486473,129491900,129492314,129502658,129503090,129505199,129507488,129512362,129514372,129516189	128883357,129050088,129059896,129098415,129144080,129147048,129149096,129154683,129165675,129177866,129190345,129192853,129250213,129252295,129260822,129267219,129270751,129280147,129288058,129291720,129297865,129300872,129313097,129314798,129315655,129315950,129316171,129320655,129328412,129342467,129349384,129353357,129366361,129369990,129383233,129391653,129393255,129401340,129402487,129403959,129427854,129438762,129440998,129443068,129445821,129453131,129454288,129456494,129460324,129464452,129465289,129473352,129475401,129478813,129481439,129486622,129492077,129492483,129502771,129503280,129505355,129507642,129512493,129514595,129516569	1.000000
suprapubic_skin_female_adult_53_years	chr11	64900883	64900885	64900883	-	RAMPAGE_only	3	5	8	0.446317	2.807355	chr11	64900759	64900881	SINE|MIR|MIRc	-	chr11	64894545	64913395	ATG2A|ENST00000418259.5	-	64894545,64895289,64896461,64896747,64897411,64897670,64897838,64898085,64898260,64898635,64900493,64900883,64901961,64902259,64902509,64903287,64903589,64905562,64905741,64906112,64906333,64906664,64907254,64907524,64907747,64908990,64909270,64909680,64910039,64910615,64910806,64911037,64911841,64912084,64912326,64913037,64913265	64895209,64895442,64896616,64896869,64897494,64897743,64897974,64898170,64898362,64898842,64900629,64901092,64902176,64902386,64902680,64903364,64903660,64905655,64905848,64906193,64906533,64906815,64907439,64907664,64907890,64909150,64909367,64909924,64910195,64910708,64910954,64911275,64911982,64912249,64912423,64913136,64913395	0.750000
suprapubic_skin_female_adult_53_years	chr15	52051088	52051128	52051127	+	RAMPAGE_only	23	27	50	2.789480	4.301468	chr15	52051063	52051356	SINE|Alu|AluYf1	-	chr15	52019222	52061816	STRG.121129.2	+	52019222,52043783,52061298	52019376,52058797,52061816	0.980000
suprapubic_skin_female_adult_53_years	chr2	130912841	130912846	130912845	+	RAMPAGE_only	5	6	12	0.669475	3.095795	chr2	130912814	130913132	DNA|TcMar-Tigger|MER44A	+	chr2	130837454	130947230	ARHGEF4|ENST00000526381.2	+	130837454,130913985,130930951,130946508	130837701,130917498,130931257,130947230	0.916667
suprapubic_skin_female_adult_53_years	chr3	197546719	197546736	197546732	-	RAMPAGE_only	6	11	27	1.506319	4.106377	chr3	197546665	197546787	SINE|MIR|MIR3	+	chr3	197536188	197555956	STRG.39060.7	-	197536188,197546360,197554561,197555780	197538952,197546486,197554713,197555956	0.518519
suprapubic_skin_female_adult_53_years	chr1	45616379	45616393	45616392	+	High_confidence	4	4	15	0.836844	3.373557	chr1	45616440	45616559	SINE|Alu|FLAM_C	+	chr1	45617236	45618246	NASP|ENST00000472408.1	+	45617236,45618060	45617591,45618246	1.000000
suprapubic_skin_female_adult_53_years	chr2	171414675	171414676	171414675	-	RAMPAGE_only	14	15	19	1.060002	3.683542	chr2	171414444	171414743	SINE|Alu|AluJb	+	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.578947
suprapubic_skin_female_adult_53_years	chr17	36510968	36511004	36510968	-	High_confidence	4	4	15	0.836844	3.182006	chr17	36510964	36511121	SINE|MIR|MIRc	-	chr17	36507422	36510853	MYO19|ENST00000615902.1	-	36507422,36507802,36508896,36510745	36507512,36507924,36509135,36510853	0.933333
suprapubic_skin_female_adult_53_years	chr9	108639958	108639986	108639958	-	High_confidence	53	54	182	10.153706	6.381510	chr9	108639757	108640012	LTR|ERVL-MaLR|MLT1L	-	chr9	108627668	108640042	STRG.85993.1	-	108627668	108640042	0.719780
suprapubic_skin_female_adult_53_years	chr21	46256890	46256925	46256890	-	High_confidence	6	6	35	1.952636	4.786426	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.800000
suprapubic_skin_female_adult_53_years	chr19	23350461	23350462	23350461	-	RAMPAGE_only	4	4	7	0.390527	2.584963	chr19	23349442	23350610	LTR|ERV1|HERVH48-int	+	chr19	23337856	23358848	STRG.139754.9	-	23337856,23358429	23356301,23358848	0.857143
suprapubic_skin_female_adult_53_years	chr3	196065792	196065793	196065792	-	High_confidence	10	10	14	0.781054	3.807355	chr3	196065710	196066018	SINE|Alu|AluSg	+	chr3	196062390	196065550	TFRC|ENST00000464368.1	-	196062390,196062853,196064308,196065442	196062645,196062939,196064428,196065550	0.500000
suprapubic_skin_female_adult_53_years	chr8	39021403	39021414	39021403	+	RAMPAGE_only	2	3	8	0.446317	2.521641	chr8	39021275	39021583	SINE|Alu|AluSq2	-	chr8	38997025	39105144	ADAM9|ENST00000468065.5	+	38997025,39007885,39011657,39013964,39016117,39017218,39018852,39021642,39023155,39025802,39026676,39041945,39054480,39055576,39071297,39077227,39090046,39091258,39101862,39103606	38997160,39007983,39011716,39014043,39016194,39017414,39018918,39021714,39023325,39025884,39026810,39042117,39054573,39055772,39071403,39077411,39090188,39091346,39101930,39105144	0.625000
suprapubic_skin_female_adult_53_years	chr1	155038159	155038164	155038163	+	High_confidence	6	6	11	0.613686	3.321928	chr1	155038092	155038557	LINE|L2|L2a	-	chr1	155037508	155042429	STRG.9512.2	+	155037508,155040484,155041396,155041713	155039531,155040624,155041613,155042429	0.909091
suprapubic_skin_female_adult_53_years	chr12	120168643	120168653	120168650	-	High_confidence	3	3	9	0.502106	3.169925	chr12	120168618	120168722	LINE|L2|L2b	+	chr12	120164670	120168414	GCN1|ENST00000551549.1	-	120164670,120168207	120164721,120168414	0.666667
suprapubic_skin_female_adult_53_years	chr17	41628660	41628696	41628695	-	High_confidence	14	14	36	2.008425	4.672140	chr17	41628668	41628794	LINE|L2|L2c	+	chr17	41627949	41628749	STRG.131750.2	-	41627949	41628749	0.750000
suprapubic_skin_female_adult_53_years	chr21	17604388	17604393	17604392	-	RAMPAGE_only	4	4	9	0.502106	2.503258	chr21	17604161	17604454	SINE|Alu|AluSq4	+	chr21	17593652	17612844	BTG3|ENST00000339775.10	-	17593652,17598616,17604144,17604859,17608971,17612698	17594332,17598824,17604276,17604997,17609152,17612844	0.888889
suprapubic_skin_female_adult_53_years	chr2	240012385	240012390	240012385	-	RAMPAGE_only	9	9	21	1.171582	4.165894	chr2	240012260	240012484	LINE|L2|L2a	+	chr2	239960740	240025323	NDUFA10|ENST00000485344.6	-	239960740,239990073,240005209,240007315,240011616,240018552,240021196,240022171,240025226	239961186,239990182,240005295,240007370,240014860,240018639,240021412,240022340,240025323	1.000000
suprapubic_skin_female_adult_53_years	chr19	10356876	10356883	10356876	-	High_confidence	2	2	7	0.390527	2.521641	chr19	10356823	10356915	SINE|MIR|MIRc	-	chr19	10354537	10357084	TYK2|ENST00000534228.1	-	10354537,10356567	10354609,10357084	0.857143
suprapubic_skin_female_adult_53_years	chr17	4187093	4187109	4187093	-	High_confidence	3	3	6	0.334738	2.584963	chr17	4187012	4187196	LINE|L1|L1PB2	-	chr17	4183525	4187109	ANKFY1|ENST00000574736.1	-	4183525,4183811,4184817,4186893	4183551,4183910,4185046,4187109	0.833333
suprapubic_skin_female_adult_53_years	chr2	109553268	109553297	109553284	-	RAMPAGE_only	5	10	22	1.227371	4.201841	chr2	109553262	109553559	SINE|Alu|AluSx1	+	chr2	109542796	109613657	SEPT10|NM_001321515.1	-	109542796,109546049,109553086,109564365,109565762,109567814,109574580,109585125,109585720,109613111	109544324,109546237,109553219,109564534,109565859,109567976,109574767,109585321,109585838,109613657	0.772727
suprapubic_skin_female_adult_53_years	chrX	151960012	151960054	151960053	-	High_confidence	3	4	11	0.613686	3.121928	chrX	151960042	151960104	SINE|MIR|MIRb	+	chrX	151953124	151959723	GABRE|ENST00000486255.1	-	151953124,151955367,151955707	151955084,151955567,151959723	0.909091
suprapubic_skin_female_adult_53_years	chr2	222600011	222600027	222600014	-	RAMPAGE_only	4	4	15	0.836844	2.950212	chr2	222599989	222600062	LINE|RTE-BovB|MamRTE1	-	chr2	222571802	222656085	STRG.27453.4	-	222571802,222599927,222613810,222619644,222623649,222624271,222630112,222631603,222633198,222634390,222639579,222640861,222642850,222648739,222656015	222572022,222600083,222613928,222619737,222623730,222628888,222630174,222631674,222633307,222634541,222639695,222640931,222643005,222648795,222656085	0.666667
suprapubic_skin_female_adult_53_years	chr6	169222535	169222544	169222535	-	High_confidence	4	4	10	0.557896	2.921928	chr6	169222512	169222824	SINE|Alu|AluSx1	+	chr6	169216191	169223440	STRG.65564.10	-	169216191,169220197	169217829,169223440	1.000000
suprapubic_skin_female_adult_53_years	chr19	18559120	18559128	18559120	+	High_confidence	3	3	7	0.390527	2.584963	chr19	18559003	18559274	SINE|Alu|AluSx1	-	chr19	18559111	18569378	KXD1|ENST00000602094.5	+	18559111,18562035,18564868,18567131,18568401	18560550,18562157,18565021,18567178,18569378	0.857143
suprapubic_skin_female_adult_53_years	chr6	79631387	79631442	79631434	+	High_confidence	2	2	9	0.502106	3.169925	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.888889
suprapubic_skin_female_adult_53_years	chr21	33447080	33447097	33447089	-	RAMPAGE_only	6	6	12	0.669475	2.845351	chr21	33446861	33447175	SINE|Alu|AluSq2	+	chr21	33432484	33448964	TMEM50B|ENST00000484377.5	-	33432484,33436882,33439213,33448781	33432802,33436992,33439297,33448964	0.916667
suprapubic_skin_female_adult_53_years	chr10	121974327	121974361	121974360	-	High_confidence	2	2	6	0.334738	2.584963	chr10	121974357	121974506	DNA|hAT-Charlie|MER5A	-	chr10	121959364	121974285	NSMCE4A|ENST00000468209.5	-	121959364,121959500,121960357,121961422,121963237,121965285,121967654,121970938,121974003	121959410,121959595,121960406,121961517,121963328,121965385,121967806,121971069,121974285	1.000000
suprapubic_skin_female_adult_53_years	chr5	177431720	177431727	177431720	+	High_confidence	2	2	7	0.390527	2.521641	chr5	177431745	177431876	SINE|MIR|MIRb	+	chr5	177431710	177442064	GRK6|ENST00000515666.5	+	177431710,177432232,177432705,177433146,177433346,177433535,177433913,177434901,177435031,177436072,177436392,177440699,177440918,177441736	177432107,177432310,177432806,177433239,177433410,177433676,177434104,177434939,177435121,177436281,177436530,177440837,177441053,177442064	1.000000
suprapubic_skin_female_adult_53_years	chr1	33021393	33021417	33021412	-	RAMPAGE_only	4	4	16	0.892634	3.456565	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.875000
suprapubic_skin_female_adult_53_years	chr16	63617757	63617758	63617757	-	High_confidence	15	15	16	0.892634	3.773557	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63305342	63618033	STRG.127446.1	-	63305342,63334599,63531224,63617692	63305420,63334667,63531304,63618033	0.562500
suprapubic_skin_female_adult_53_years	chr17	40496721	40496730	40496721	-	RAMPAGE_only	6	12	25	1.394740	4.168296	chr17	40496611	40496803	SINE|MIR|MIR	+	chr17	40457806	40501597	STRG.131651.2	-	40457806,40460633,40469655,40478306,40478579,40479673,40480699,40482128,40482323,40484483,40484920,40487035,40488545,40495986	40458694,40460724,40477729,40478333,40478648,40479842,40480768,40482206,40482416,40484609,40485007,40487460,40488969,40501597	0.840000
suprapubic_skin_female_adult_53_years	chr11	65432994	65433318	65433226	+	RAMPAGE_only	53	56	560	31.242174	6.480339	chr11	65432693	65433229	LINE|L1|L1PB3	-	chr11	65423637	65444557	STRG.99047.6	+	65423637,65437100	65437047,65444557	0.996429
suprapubic_skin_female_adult_53_years	chr17	21006852	21006940	21006852	-	RAMPAGE_only	3	3	18	1.004213	3.947703	chr17	21006507	21006802	SINE|Alu|AluSc	-	chr17	20999592	21043039	USP22|ENST00000261497.8	-	20999592,21004201,21004927,21006895,21007869,21011150,21012829,21015751,21017941,21019083,21021112,21028541,21042664	21003073,21004351,21004990,21006987,21007996,21011309,21012935,21015899,21018111,21019185,21021226,21028674,21043039	0.611111
suprapubic_skin_female_adult_53_years	chr20	24930628	24930666	24930639	+	High_confidence	14	14	78	4.351588	5.492142	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930641	24932867	STRG.144431.1	+	24930641,24931346	24930774,24932867	0.897436
suprapubic_skin_female_adult_53_years	chr20	62286444	62286495	62286444	+	RAMPAGE_only	3	3	12	0.669475	3.251629	chr20	62286166	62286468	SINE|Alu|AluSx1	+	chr20	62291561	62294114	OSBPL2|ENST00000471817.2	+	62291561,62293784	62291793,62294114	0.666667
suprapubic_skin_female_adult_53_years	chr10	59806932	59806967	59806966	-	RAMPAGE_only	4	5	12	0.669475	3.277613	chr10	59806852	59806982	LINE|Penelope|Penelope1_Vert	+	chr10	59791751	59805576	CCDC6|ENST00000491922.1	-	59791751,59794472,59804419	59793111,59794597,59805576	0.916667
suprapubic_skin_female_adult_53_years	chr3	143012121	143012138	143012121	+	High_confidence	5	5	10	0.557896	2.725481	chr3	143011380	143012140	DNA|hAT-Charlie|Charlie1a	+	chr3	143012252	143017350	U2SURP|ENST00000491827.1	+	143012252,143014310,143016256,143016841	143012353,143014409,143016371,143017350	0.700000
suprapubic_skin_female_adult_53_years	chr9	2073107	2073123	2073122	+	High_confidence	2	2	7	0.390527	2.584963	chr9	2072786	2073156	LTR|ERVL-MaLR|MLT1N2	-	chr9	2073096	2081860	SMARCA2|ENST00000635129.1	+	2073096,2073565,2076228,2077628,2081831	2073342,2073623,2076329,2077776,2081860	0.857143
suprapubic_skin_female_adult_53_years	chr9	122286041	122286063	122286054	+	RAMPAGE_only	2	2	6	0.334738	2.584963	chr9	122286027	122286167	SINE|MIR|MIR3	+	chr9	122270847	122323088	MRRF|ENST00000489572.5	+	122270847,122280442,122285168,122285779,122286038,122291748,122313226,122322539	122271075,122280598,122285287,122285946,122286166,122291840,122313386,122323088	1.000000
suprapubic_skin_female_adult_53_years	chr12	27030063	27030091	27030074	+	High_confidence	4	4	10	0.557896	2.725481	chr12	27029851	27030119	LINE|L1|L1MDa	+	chr12	27030259	27030673	MED21|ENST00000621885.1	+	27030259	27030673	0.800000
suprapubic_skin_female_adult_53_years	chr1	144459416	144459451	144459450	-	RAMPAGE_only	5	5	13	0.725265	3.418296	chr1	144459208	144459506	SINE|Alu|AluJb	+	chr1	144421385	144456761	STRG.8624.4	-	144421385,144423869,144424689,144425516,144426277,144427046,144427817,144428605,144429699,144433772,144435110,144435780,144436894,144437944,144439828,144440140,144448774,144450771,144456536	144423256,144423975,144424862,144425568,144426450,144427098,144427990,144428657,144429863,144433824,144435316,144435853,144437109,144438047,144440038,144440295,144448916,144450870,144456761	0.615385
suprapubic_skin_female_adult_53_years	chr12	53464768	53464818	53464769	+	RAMPAGE_only	3	5	35	1.952636	4.741364	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479614	STRG.105456.14	+	53462513,53464759,53465931,53467220,53468776,53471637,53479405	53462567,53464852,53465973,53467843,53468832,53471807,53479614	0.885714
suprapubic_skin_female_adult_53_years	chr7	64897761	64897795	64897783	+	RAMPAGE_only	23	24	85	4.742116	4.906982	chr7	64897708	64898026	SINE|Alu|AluY	-	chr7	64882512	64929257	STRG.68419.2	+	64882512,64893411,64893549,64893747,64897347,64917029,64917580,64918196,64927653	64882785,64893456,64893638,64893897,64898054,64917118,64917707,64918292,64929257	0.988235
suprapubic_skin_female_adult_53_years	chr17	28695274	28695275	28695274	+	High_confidence	9	9	14	0.781054	3.521641	chr17	28695199	28695350	SINE|MIR|MIR3	+	chr17	28695009	28696883	SUPT6H|ENST00000580471.1	+	28695009,28696843	28695547,28696883	0.642857
suprapubic_skin_female_adult_53_years	chr22	41284909	41284910	41284909	-	RAMPAGE_only	4	4	6	0.334738	2.584963	chr22	41284879	41285182	SINE|Alu|AluJr	+	chr22	41245614	41286207	STRG.151238.3	-	41245614,41249329,41249728,41251006,41252871,41254307,41256020,41256710,41257947,41261445,41264663,41268096,41274599,41280932,41281456	41246672,41249451,41249928,41251109,41252991,41254494,41256290,41256824,41258106,41261580,41264843,41268156,41274727,41281082,41286207	1.000000
suprapubic_skin_female_adult_53_years	chr6	1050959	1050976	1050959	+	RAMPAGE_only	5	5	10	0.557896	2.641604	chr6	1050276	1050967	LTR|ERVL|MER21B	-	chr6	1035490	1056263	STRG.56375.1	+	1035490,1050825,1055344	1035597,1051296,1056263	0.900000
suprapubic_skin_female_adult_53_years	chr5	80160234	80160280	80160279	-	RAMPAGE_only	2	3	7	0.390527	2.584963	chr5	80159462	80160289	LTR|ERVL|MER21B	+	chr5	80138726	80256079	STRG.50798.2	-	80138726,80146089,80147244,80150881,80158835,80169334,80174953,80177314,80177885,80202885,80255895	80143810,80146234,80147284,80150948,80166478,80169546,80175047,80177397,80178064,80203053,80256079	0.857143
suprapubic_skin_female_adult_53_years	chr11	58577988	58578024	58578011	-	High_confidence	3	3	9	0.502106	2.750000	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58550393	58578135	STRG.97668.3	-	58550393,58554840,58564154,58570555,58577985	58551232,58554940,58564201,58570713,58578135	0.555556
suprapubic_skin_female_adult_53_years	chr19	49880213	49880214	49880213	+	RAMPAGE_only	29	32	35	1.952636	4.373796	chr19	49880157	49880245	SINE|MIR|MIR1_Amn	+	chr19	49878549	49888748	TBC1D17|ENST00000596243.5	+	49878549,49880278,49881267,49882040,49882241,49882763,49882972,49883650,49884252,49884458,49884658,49887475,49887717,49888230,49888423	49879504,49880402,49881475,49882152,49882400,49882892,49883076,49883745,49884369,49884559,49884758,49887573,49887834,49888317,49888748	0.657143
suprapubic_skin_female_adult_53_years	chr3	112119358	112119359	112119358	+	RAMPAGE_only	6	6	8	0.446317	3.000000	chr3	112119102	112119372	SINE|Alu|AluSq2	+	chr3	112111453	112131004	C3orf52|ENST00000467942.2	+	112111453,112112338,112112963,112116641,112119468,112128232	112111780,112112459,112113145,112116867,112119562,112131004	0.750000
suprapubic_skin_female_adult_53_years	chr7	92457392	92457403	92457392	+	RAMPAGE_only	11	11	20	1.115792	3.921928	chr7	92457181	92457482	SINE|Alu|AluSx	+	chr7	92447447	92459432	GATAD1|ENST00000287957.4	+	92447447,92448751,92450700,92454501,92456371	92447978,92448877,92450760,92454685,92459432	0.850000
suprapubic_skin_female_adult_53_years	chr10	14877055	14877063	14877062	+	RAMPAGE_only	6	8	14	0.781054	3.378783	chr10	14876839	14877141	LINE|L2|L2	-	chr10	14878782	14904315	SUV39H2|NM_001193424.1	+	14878782,14881499,14896845,14899538,14901132,14902405	14878919,14881645,14897517,14899685,14901262,14904315	1.000000
suprapubic_skin_female_adult_53_years	chr5	108768104	108768124	108768104	+	RAMPAGE_only	3	4	8	0.446317	2.521641	chr5	108768042	108768250	LINE|CR1|L3b	-	chr5	108748966	108843001	FER|ENST00000502752.1	+	108748966,108768092,108782662,108798123,108832769,108835707,108841830,108842261	108748993,108768238,108782755,108798389,108832943,108835807,108841868,108843001	0.875000
suprapubic_skin_female_adult_53_years	chr11	9585175	9585205	9585185	+	RAMPAGE_only	4	4	18	1.004213	3.947703	chr11	9585097	9585190	DNA|hAT-Charlie|MER5B	-	chr11	9583828	9589207	STRG.95781.10	+	9583828,9586710,9588448	9586619,9586856,9589207	1.000000
suprapubic_skin_female_adult_53_years	chr1	51366115	51366141	51366121	-	RAMPAGE_only	7	7	27	1.506319	3.031579	chr1	51366072	51366367	SINE|Alu|AluJb	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.925926
suprapubic_skin_female_adult_53_years	chr14	105079766	105079790	105079778	-	High_confidence	3	3	13	0.725265	3.251629	chr14	105078600	105080045	Retroposon|SVA|SVA_D	-	chr14	105078823	105080768	STRG.118571.2	-	105078823	105080768	0.846154
suprapubic_skin_female_adult_53_years	chr7	21618200	21618201	21618200	+	High_confidence	4	4	7	0.390527	2.521641	chr7	21618177	21618299	DNA|hAT-Blackjack|MER81	+	chr7	21618193	21636078	DNAH11|ENST00000465593.1	+	21618193,21619099,21619955,21635870	21618473,21619222,21620078,21636078	0.714286
suprapubic_skin_female_adult_53_years	chrX	53145801	53145888	53145886	+	RAMPAGE_only	4	6	23	1.283161	4.436605	chrX	53145018	53148476	LINE|L1|L1PA4	+	chrX	53094156	53170727	STRG.153706.4	+	53094156,53141847	53094474,53170727	1.000000
suprapubic_skin_female_adult_53_years	chr10	119585070	119585082	119585081	-	RAMPAGE_only	6	6	12	0.669475	2.918296	chr10	119584838	119585146	SINE|Alu|AluSc8	+	chr10	119584410	119586353	STRG.94063.1	-	119584410	119586353	0.916667
suprapubic_skin_female_adult_53_years	chr7	1097259	1097263	1097259	-	RAMPAGE_only	12	14	25	1.394740	4.403856	chr7	1097189	1098106	LINE|L1|L1MC4	+	chr7	997493	1127388	C7orf50|ENST00000488073.1	-	997493,1000469,1009949,1109327,1127256	997804,1000551,1010143,1109461,1127388	0.880000
suprapubic_skin_female_adult_53_years	chr19	51069382	51069384	51069383	-	High_confidence	14	27	36	2.008425	4.648956	chr19	51069174	51069685	LINE|L2|L2-1_AMi	+	chr19	51067880	51069514	STRG.141863.3	-	51067880	51069514	0.972222
suprapubic_skin_female_adult_53_years	chr8	94671366	94671391	94671387	+	RAMPAGE_only	5	6	19	1.060002	3.576618	chr8	94671260	94671400	DNA|hAT-Charlie|MER5A1	-	chr8	94665156	94706515	STRG.77674.10	+	94665156,94667948,94674307,94678202,94692676,94696851,94705924	94665196,94671671,94674506,94678371,94692827,94696961,94706515	1.000000
suprapubic_skin_female_adult_53_years	chr15	89837965	89837969	89837965	-	High_confidence	2	3	8	0.446317	3.000000	chr15	89837927	89838155	SINE|MIR|MIRb	+	chr15	89835423	89837954	AP3S2|ENST00000558926.1	-	89835423,89837614	89835643,89837954	0.875000
suprapubic_skin_female_adult_53_years	chr12	108563961	108563974	108563973	+	RAMPAGE_only	14	15	22	1.227371	3.746439	chr12	108563913	108564050	DNA|TcMar-Mariner|MARNA	-	chr12	108562616	108567444	ISCU|ENST00000535405.1	+	108562616,108564059,108565320,108567189	108562736,108564392,108565431,108567444	0.909091
suprapubic_skin_female_adult_53_years	chr5	126594271	126594272	126594271	-	High_confidence	5	5	7	0.390527	2.521641	chr5	126594110	126594228	LINE|L2|L2b	-	chr5	126568039	126594318	ALDH7A1|ENST00000511266.6	-	126568039,126570781,126575419,126577078,126582850,126583931,126592663,126593350	126568356,126570859,126575464,126577211,126582974,126584012,126592729,126594318	1.000000
suprapubic_skin_female_adult_53_years	chr6	124865681	124865682	124865681	+	High_confidence	15	15	17	0.948423	3.702820	chr6	124865520	124865913	LTR|ERVL-MaLR|MLT1A1	+	chr6	124865699	124882898	STRG.63571.1	+	124865699,124882352	124865834,124882898	0.882353
suprapubic_skin_female_adult_53_years	chr22	37942391	37942399	37942398	+	RAMPAGE_only	6	6	13	0.725265	3.546594	chr22	37942378	37942494	DNA|hAT-Charlie|MER102a	-	chr22	37906296	37942822	MICALL1|ENST00000215957.10	+	37906296,37911951,37912350,37917706,37919035,37921971,37924659,37925660,37927410,37931798,37932552,37932797,37933038,37937079,37937745,37940708	37906568,37912000,37912492,37917795,37919178,37922426,37924717,37926043,37927826,37931933,37932679,37932888,37933112,37937194,37937792,37942822	0.846154
suprapubic_skin_female_adult_53_years	chr16	10526080	10526108	10526107	-	RAMPAGE_only	5	5	13	0.725265	3.584963	chr16	10526024	10526340	SINE|Alu|AluYe5	+	chr16	10514841	10528202	LINC01290|ENST00000566787.1	-	10514841,10528091	10515232,10528202	0.692308
suprapubic_skin_female_adult_53_years	chr2	28906372	28906380	28906379	+	RAMPAGE_only	11	18	30	1.673688	3.352584	chr2	28906339	28906430	SINE|Alu|AluJb	+	chr2	28905005	28926485	WDR43|ENST00000296126.6	+	28905005,28906459,28912589,28914068,28917892,28922918,28924981,28926467	28905051,28906581,28912710,28914208,28917995,28922983,28925153,28926485	0.700000
suprapubic_skin_female_adult_53_years	chr5	148089215	148089223	148089222	+	RAMPAGE_only	5	5	9	0.502106	2.750000	chr5	148089083	148089302	LINE|L2|L2c	+	chr5	148090652	148098003	SPINK5|ENST00000481286.5	+	148090652,148091164,148094353,148095817,148097866	148090700,148091228,148094481,148095905,148098003	0.888889
suprapubic_skin_female_adult_53_years	chr11	34108017	34108036	34108035	+	High_confidence	3	5	12	0.669475	3.277613	chr11	34108006	34108159	SINE|MIR|MIRb	+	chr11	34108208	34146908	NAT10|ENST00000527971.5	+	34108208,34108741,34112051,34113715,34115822,34118179,34118395,34146105	34108333,34108833,34112223,34113838,34115884,34118294,34118503,34146908	0.666667
suprapubic_skin_female_adult_53_years	chr2	74073473	74073474	74073473	+	RAMPAGE_only	13	13	17	0.948423	3.690117	chr2	74073191	74073493	LINE|L1|L1ME1	-	chr2	74047159	74073904	TET3|ENST00000475405.2	+	74047159,74073548	74048411,74073904	0.941176
suprapubic_skin_female_adult_53_years	chr8	129786191	129786208	129786207	-	High_confidence	4	4	9	0.502106	3.000000	chr8	129786052	129786345	SINE|Alu|AluSg7	+	chr8	129748195	129786888	GSDMC|ENST00000276708.8	-	129748195,129749451,129749989,129750430,129751541,129751861,129752105,129752697,129760544,129762625,129765627,129776101,129777367,129786010	129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752820,129760589,129762731,129765793,129776285,129777591,129786888	0.888889
suprapubic_skin_female_adult_53_years	chr3	112088521	112088522	112088521	+	RAMPAGE_only	5	5	8	0.446317	2.500000	chr3	112088443	112088655	SINE|MIR|MIRb	-	chr3	112086437	112118210	STRG.34217.4	+	112086437,112093359,112102837,112112963,112116641	112086545,112093489,112109613,112113145,112118210	1.000000
suprapubic_skin_female_adult_53_years	chr13	52417392	52417414	52417392	-	RAMPAGE_only	3	3	9	0.502106	3.000000	chr13	52417368	52417659	SINE|Alu|AluSp	-	chr13	52416153	52418448	VPS36|ENST00000649498.1	-	52416153,52417991	52417679,52418448	0.777778
suprapubic_skin_female_adult_53_years	chr1	12348912	12348956	12348955	+	RAMPAGE_only	5	8	29	1.617898	4.307355	chr1	12348985	12349026	LINE|L2|L2a	+	chr1	12333028	12373848	STRG.762.12	+	12333028,12335704,12341779,12345373,12346604,12348822,12353973,12355898,12356397,12358458,12362719,12363071,12368467,12369466,12373749	12333366,12335827,12343051,12345509,12346652,12349374,12354221,12356090,12356524,12358601,12362850,12363247,12368591,12369702,12373848	0.965517
suprapubic_skin_female_adult_53_years	chr10	47986075	47986104	47986075	-	RAMPAGE_only	4	4	10	0.557896	2.921928	chr10	47985815	47986226	LINE|L1|L1ME2	-	chr10	47985518	47991850	AC245041.2|ENST00000610809.1	-	47985518,47991679	47987309,47991850	0.900000
suprapubic_skin_female_adult_53_years	chr5	43065997	43066041	43066035	+	High_confidence	10	10	59	3.291586	5.334092	chr5	43065879	43066122	SINE|Alu|AluSx3	+	chr5	43066030	43122147	STRG.49015.8	+	43066030,43112487,43116446,43119922,43122038	43068217,43112674,43116630,43120051,43122147	1.000000
suprapubic_skin_female_adult_53_years	chr3	195688757	195688758	195688757	+	High_confidence	11	11	15	0.836844	3.456565	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688755	195708806	MUC20-OT1|ENST00000628547.2	+	195688755,195689338,195696360,195699029,195708133,195708746	195688797,195689438,195696589,195699178,195708435,195708806	0.866667
suprapubic_skin_female_adult_53_years	chr3	186787020	186787047	186787020	+	RAMPAGE_only	2	2	9	0.502106	2.725481	chr3	186786926	186787056	SINE|Alu|AluJb	-	chr3	186785961	186788368	EIF4A2|ENST00000468362.5	+	186785961,186786163,186786501,186787126,186787494	186786051,186786273,186786645,186787264,186788368	0.777778
suprapubic_skin_female_adult_53_years	chr3	46671765	46671791	46671765	-	RAMPAGE_only	23	24	37	2.064215	4.574054	chr3	46671642	46671807	SINE|MIR|MIR3	+	chr3	46671487	46674593	ALS2CL|ENST00000473484.1	-	46671487,46671883,46672139,46673338,46674565	46671768,46672033,46672201,46673381,46674593	0.540541
suprapubic_skin_female_adult_53_years	chr19	7642207	7642328	7642316	+	High_confidence	5	6	43	2.398953	4.702557	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.930233
suprapubic_skin_female_adult_53_years	chr4	70763610	70763617	70763616	+	RAMPAGE_only	6	6	11	0.613686	3.277613	chr4	70763601	70763658	LINE|L2|L2a	-	chr4	70734433	70807102	RUFY3|ENST00000502653.5	+	70734433,70741626,70762518,70763551,70764474,70768537,70773510,70775167,70778368,70783090,70784795,70788805,70789494,70793784,70794794,70800140,70802955,70804347,70806515	70734593,70741680,70762692,70763669,70764576,70768661,70773572,70775233,70778438,70783183,70784879,70788973,70789592,70793904,70794894,70800205,70802983,70804416,70807102	1.000000
suprapubic_skin_female_adult_53_years	chr17	15530794	15530796	15530794	-	RAMPAGE_only	7	11	13	0.725265	2.873141	chr17	15530098	15530758	LINE|L1|L1M4	-	chr17	15435885	15563536	STRG.130364.1	-	15435885,15440207,15503097,15545784,15547058,15553684,15555281,15563436	15438200,15440285,15540561,15545916,15547148,15553829,15555364,15563536	0.846154
suprapubic_skin_female_adult_53_years	chr4	73144765	73144771	73144765	-	RAMPAGE_only	4	4	13	0.725265	3.392747	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.846154
suprapubic_skin_female_adult_53_years	chr11	57814072	57814119	57814072	+	High_confidence	9	10	43	2.398953	4.784143	chr11	57814032	57814187	SINE|Alu|AluJr4	+	chr11	57813916	57815481	CTNND1|ENST00000525821.1	+	57813916,57815393	57814373,57815481	0.953488
suprapubic_skin_female_adult_53_years	chr9	84290389	84290408	84290401	-	RAMPAGE_only	5	5	14	0.781054	3.546594	chr9	84290379	84290546	DNA|hAT-Charlie|MER5A	+	chr9	84276342	84291542	STRG.84286.1	-	84276342,84279264,84279974,84280800,84285344,84285942,84288047,84290153	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84291542	0.928571
suprapubic_skin_female_adult_53_years	chr17	43492593	43492704	43492610	+	RAMPAGE_only	34	37	96	5.355801	5.663113	chr17	43492561	43492635	LINE|L2|L2c	-	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	0.958333
suprapubic_skin_female_adult_53_years	chr11	65431682	65432065	65432016	+	RAMPAGE_only	81	86	1085	60.531712	7.189088	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65423637	65444557	STRG.99047.6	+	65423637,65437100	65437047,65444557	1.000000
suprapubic_skin_female_adult_53_years	chr16	56941914	56941969	56941968	+	High_confidence	2	2	8	0.446317	2.521641	chr16	56941864	56941990	LINE|L2|L2c	-	chr16	56942010	56943407	HERPUD1|ENST00000568814.1	+	56942010,56943125	56942237,56943407	0.625000
suprapubic_skin_female_adult_53_years	chr12	112219641	112219642	112219641	-	High_confidence	10	10	15	0.836844	3.006239	chr12	112219602	112219899	SINE|Alu|AluSx	-	chr12	112216820	112219580	HECTD4|ENST00000552437.1	-	112216820,112217033,112219385	112216921,112217195,112219580	0.800000
suprapubic_skin_female_adult_53_years	chr3	126773382	126773395	126773394	+	RAMPAGE_only	7	8	26	1.450529	3.715454	chr3	126773219	126773597	LINE|L1|L1MB4	-	chr3	126730563	126960391	CHCHD6|ENST00000513253.1	+	126730563,126733077,126852646,126914679,126957424,126960195	126730630,126733222,126852730,126914750,126957551,126960391	0.769231
suprapubic_skin_female_adult_53_years	chr12	355417	355442	355417	-	RAMPAGE_only	2	2	8	0.446317	2.750000	chr12	355275	355492	SINE|MIR|MIR	-	chr12	280128	389454	KDM5A|ENST00000399788.6	-	280128,292758,295572,297040,306945,307453,309802,310884,313055,318105,320994,322416,323081,323599,328834,331818,333486,334240,350620,352204,354075,355157,356431,362962,365933,384030,385896,388926	285662,293169,295793,297200,307089,308005,309964,311064,313194,318461,321109,322567,323206,323781,329029,331938,333649,334422,350779,352324,354234,355249,356537,363097,366104,384153,385974,389454	0.875000
suprapubic_skin_female_adult_53_years	chr9	33259285	33259337	33259312	-	RAMPAGE_only	3	3	19	1.060002	3.281036	chr9	33259078	33259386	SINE|Alu|AluSz	+	chr9	33255218	33260441	STRG.82122.7	-	33255218,33255864,33256800	33255308,33255927,33260441	0.947368
suprapubic_skin_female_adult_53_years	chr11	7905875	7905936	7905902	-	High_confidence	17	17	92	5.132643	6.011394	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.826087
suprapubic_skin_female_adult_53_years	chr1	6223420	6223456	6223420	-	RAMPAGE_only	4	4	19	1.060002	4.037401	chr1	6223098	6223406	SINE|Alu|AluSx3	-	chr1	6221192	6235940	ICMT|ENST00000343813.9	-	6221192,6231901,6233473,6234885,6235716	6225262,6232119,6233643,6234974,6235940	1.000000
suprapubic_skin_female_adult_53_years	chr18	42027530	42027548	42027538	+	RAMPAGE_only	3	3	9	0.502106	2.641604	chr18	42027565	42027649	DNA|hAT-Charlie|MER58B	+	chr18	42025781	42037817	PIK3C3|ENST00000590013.2	+	42025781,42027442,42029324,42033825,42037691	42025939,42027548,42029441,42033957,42037817	0.777778
suprapubic_skin_female_adult_53_years	chr13	32523313	32523340	32523313	-	RAMPAGE_only	25	27	59	3.291586	4.935844	chr13	32523108	32523404	SINE|Alu|AluSz6	+	chr13	32516893	32525579	N4BP2L2|ENST00000503814.1	-	32516893,32521372	32518003,32525579	0.983051
suprapubic_skin_female_adult_53_years	chr2	241372946	241372950	241372949	+	High_confidence	14	14	28	1.562109	3.128364	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241372848	241403923	FARP2|ENST00000445489.1	+	241372848,241403827	241373290,241403923	0.892857
suprapubic_skin_female_adult_53_years	chrX	107156150	107156167	107156166	-	RAMPAGE_only	5	6	12	0.669475	3.095795	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.500000
suprapubic_skin_female_adult_53_years	chr7	128641013	128641062	128641013	+	High_confidence	4	4	19	1.060002	3.683542	chr7	128640990	128641042	LTR|ERVL|LTR41	+	chr7	128641240	128660998	LINC01000|NR_024368.1	+	128641240,128642216,128648791,128651037,128651188	128641379,128642281,128648982,128651095,128660998	0.684211
suprapubic_skin_female_adult_53_years	chr9	128926969	128926974	128926973	+	High_confidence	5	5	12	0.669475	3.459432	chr9	128926857	128926990	LINE|L2|L2b	-	chr9	128927045	128940709	PHYHD1|ENST00000424503.1	+	128927045,128933726,128934010,128936447,128936582,128937756,128940368,128940598	128927196,128933857,128934058,128936503,128936645,128937778,128940497,128940709	0.666667
suprapubic_skin_female_adult_53_years	chr6	137045307	137045308	137045307	-	High_confidence	11	12	13	0.725265	3.188722	chr6	137045242	137045773	DNA|TcMar-Tigger|Tigger3b	-	chr6	136999970	137045180	IL20RA|NM_001278724.1	-	136999970,137004620,137008598,137009316,137016967,137044640	137002355,137004760,137008743,137009426,137017103,137045180	0.923077
suprapubic_skin_female_adult_53_years	chr7	44619050	44619051	44619050	+	RAMPAGE_only	7	7	8	0.446317	2.521641	chr7	44618793	44619481	LTR|ERVL|MER21A	+	chr7	44606638	44709066	OGDH|ENST00000222673.5	+	44606638,44624316,44645326,44647656,44666735,44673786,44674410,44675177,44675969,44681719,44693824,44694423,44696024,44696428,44696913,44697369,44697603,44698191,44700140,44701542,44707224,44707581,44707878	44606653,44624565,44645518,44647759,44666851,44673941,44674557,44675268,44676149,44681848,44694004,44694576,44696127,44696557,44697064,44697497,44697782,44698263,44700269,44701615,44707388,44707736,44709066	0.500000
suprapubic_skin_female_adult_53_years	chrX	53145666	53145667	53145666	+	RAMPAGE_only	7	7	11	0.613686	3.095795	chrX	53145018	53148476	LINE|L1|L1PA4	+	chrX	53094156	53170727	STRG.153706.4	+	53094156,53141847	53094474,53170727	0.909091
suprapubic_skin_female_adult_53_years	chr2	156254935	156254963	156254935	-	High_confidence	14	17	73	4.072641	5.775240	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156020539	156254918	LINC01876|ENST00000638047.1	-	156020539,156022671,156024484,156150484,156205381,156227966,156254777	156021899,156022817,156024607,156150602,156205438,156228004,156254918	0.506849
suprapubic_skin_female_adult_53_years	chr4	88778860	88779135	88778990	-	RAMPAGE_only	30	30	227	12.664238	6.104415	chr4	88778566	88779217	LINE|L2|L2a	+	chr4	88758789	88823201	STRG.43710.12	-	88758789,88767552,88767982,88787752,88790585,88805010,88822975	88758901,88767595,88781351,88787932,88790627,88805052,88823201	0.982379
suprapubic_skin_female_adult_53_years	chr18	39800293	39800314	39800293	-	High_confidence	9	9	51	2.845269	5.092064	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.607843
suprapubic_skin_female_adult_53_years	chr15	42147911	42147940	42147939	-	High_confidence	3	3	12	0.669475	3.251629	chr15	42147814	42147909	SINE|MIR|MIR	-	chr15	42146674	42147733	PLA2G4F|ENST00000561893.1	-	42146674,42147625	42147346,42147733	0.666667
suprapubic_skin_female_adult_53_years	chr11	47172282	47172314	47172312	-	High_confidence	9	16	33	1.841057	4.476410	chr11	47172030	47172274	SINE|MIR|MIRb	-	chr11	47166267	47171557	ARFGAP2|ENST00000527776.5	-	47166267,47166505,47166759,47167908,47168122,47171452	47166386,47166599,47166886,47168043,47168251,47171557	0.878788
suprapubic_skin_female_adult_53_years	chr11	119006947	119006967	119006966	+	RAMPAGE_only	5	7	16	0.892634	3.500000	chr11	119006713	119007066	LTR|ERVL-MaLR|THE1B	+	chr11	118998174	119015428	STRG.101503.3	+	118998174,118998429,118999010,119001612,119011220,119011938,119012148,119013231,119014993,119015306	118998317,118998593,118999109,119010830,119011311,119012003,119012254,119013262,119015083,119015428	0.937500
suprapubic_skin_female_adult_53_years	chr15	72563267	72563268	72563267	+	RAMPAGE_only	5	5	7	0.390527	2.807355	chr15	72563062	72563358	SINE|Alu|AluJr	-	chr15	72474644	72563500	ARIH1|ENST00000564062.1	+	72474644,72518066,72561482,72563393	72475014,72518134,72561549,72563500	0.571429
suprapubic_skin_female_adult_53_years	chr1	1721622	1721649	1721648	-	High_confidence	13	13	45	2.510532	5.091853	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.800000
suprapubic_skin_female_adult_53_years	chr12	112039657	112039691	112039690	-	RAMPAGE_only	10	10	31	1.729477	4.349200	chr12	112039466	112039729	LINE|L2|L2c	+	chr12	112039261	112061792	STRG.108567.4	-	112039261,112042038,112043087,112043624,112047664,112048291,112049482,112053557,112054387,112060269,112061180	112040578,112042104,112043211,112043868,112047790,112048443,112049611,112053657,112054568,112060359,112061792	0.838710
suprapubic_skin_female_adult_53_years	chr16	84982066	84982084	84982066	-	High_confidence	4	4	12	0.669475	3.418296	chr16	84982049	84982360	SINE|Alu|AluSg4	+	chr16	84976495	84982117	ZDHHC7|ENST00000566909.1	-	84976495,84977094,84977923,84979188,84981869	84976519,84977225,84978005,84979285,84982117	0.916667
suprapubic_skin_female_adult_53_years	chr11	10806102	10806192	10806191	-	High_confidence	22	23	86	4.797905	5.727155	chr11	10806178	10806347	DNA|hAT-Charlie|MER5A	-	chr11	10804291	10806263	EIF4G2|ENST00000532152.5	-	10804291,10804912,10805906	10804418,10805015,10806263	0.779070
suprapubic_skin_female_adult_53_years	chr11	70165364	70165365	70165364	+	RAMPAGE_only	7	7	7	0.390527	2.807355	chr11	70164951	70165389	LTR|ERVL-MaLR|MLT1C	-	chr11	70108184	70189252	ANO1|ENST00000531349.5	+	70108184,70111706,70116457,70124349,70126060,70131918,70149709,70152449,70153056,70156946,70161160,70161621,70163282,70165469,70167241,70170886,70180003,70182501,70185589,70187737	70108404,70111762,70116499,70124414,70126195,70132079,70149792,70152461,70153128,70157021,70161362,70161733,70163340,70165570,70167387,70171039,70180056,70182686,70185695,70189252	0.571429
suprapubic_skin_female_adult_53_years	chr13	96994726	96994737	96994736	-	High_confidence	4	6	9	0.502106	2.503258	chr13	96994693	96994749	SINE|Alu|Alu	-	chr13	96987552	96994730	OXGR1|ENST00000541518.5	-	96987552,96989757,96992421,96994568	96987775,96989809,96992572,96994730	0.888889
suprapubic_skin_female_adult_53_years	chr12	27030171	27030247	27030246	+	High_confidence	11	11	54	3.012638	3.820919	chr12	27030124	27030371	SINE|Alu|AluJr	-	chr12	27030259	27030673	MED21|ENST00000621885.1	+	27030259	27030673	0.981481
suprapubic_skin_female_adult_53_years	chr12	52056876	52056877	52056876	+	High_confidence	17	17	24	1.338950	4.251629	chr12	52056859	52057005	DNA|hAT-Tip100|MER91A	-	chr12	52056603	52058703	NR4A1|ENST00000550582.2	+	52056603,52056889,52057351,52058687	52056645,52057259,52057530,52058703	0.541667
suprapubic_skin_female_adult_53_years	chr10	27119525	27119552	27119543	-	RAMPAGE_only	6	6	13	0.725265	3.022055	chr10	27119528	27119833	SINE|Alu|AluSq	+	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	0.846154
suprapubic_skin_female_adult_53_years	chr4	88747977	88747978	88747977	-	RAMPAGE_only	11	11	16	0.892634	3.625000	chr4	88747887	88748191	SINE|Alu|AluY	-	chr4	88731832	88749867	FAM13A|ENST00000508360.5	-	88731832,88737471,88739029,88746931,88747630,88748951,88749770	88732198,88737555,88739125,88747015,88747851,88749033,88749867	0.812500
suprapubic_skin_female_adult_53_years	chr18	23474782	23474810	23474782	+	RAMPAGE_only	3	4	9	0.502106	2.947703	chr18	23474513	23474894	LINE|L2|L2c	+	chr18	23466168	23481365	RIOK3|ENST00000581339.1	+	23466168,23473428,23474947,23477005,23479316,23481171	23466276,23473483,23475107,23477268,23479424,23481365	1.000000
suprapubic_skin_female_adult_53_years	chr5	34244753	34244816	34244753	-	High_confidence	13	13	86	4.797905	5.479938	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.686047
suprapubic_skin_female_adult_53_years	chr14	53043565	53043572	53043565	-	RAMPAGE_only	4	4	13	0.725265	2.751629	chr14	53043432	53043727	SINE|Alu|AluJb	-	chr14	53036744	53153098	DDHD1|ENST00000612692.4	-	53036744,53051843,53054437,53055659,53058476,53061125,53062942,53072596,53073740,53091784,53093315,53103682,53152260,53152705	53046949,53051927,53054629,53055912,53058626,53061201,53063205,53072703,53073847,53091932,53093444,53103856,53152318,53153098	0.846154
suprapubic_skin_female_adult_53_years	chr10	3780741	3780949	3780930	-	RAMPAGE_only	7	9	100	5.578960	5.480291	chr10	3780909	3781012	LINE|CR1|L3b	+	chr10	3780326	3785193	KLF6|ENST00000469435.1	-	3780326,3784912	3782214,3785193	0.910000
suprapubic_skin_female_adult_53_years	chr13	19239618	19239643	19239636	-	RAMPAGE_only	5	5	21	1.171582	3.517816	chr13	19239586	19239800	LTR|ERVL-MaLR|MLT1F	-	chr13	19201636	19227432	PSPC1P1|ENST00000442352.1	-	19201636,19204339,19208482,19219709,19227247	19201822,19204509,19208540,19219775,19227432	0.809524
suprapubic_skin_female_adult_53_years	chr5	151563324	151563341	151563324	-	RAMPAGE_only	2	2	8	0.446317	2.807355	chr5	151563125	151563282	DNA|hAT-Charlie|MER5A	-	chr5	151504091	151568944	FAT2|NM_001447.2	-	151504091,151507153,151510020,151512164,151517619,151521275,151525767,151527233,151527995,151529177,151531586,151534408,151537792,151540566,151542284,151549294,151550589,151551466,151553176,151554361,151556343,151563324,151565672	151506097,151507611,151510174,151512606,151517765,151522086,151525965,151527377,151528133,151529392,151531970,151534642,151537946,151540763,151546337,151549505,151550871,151551606,151553387,151554673,151556402,151563639,151568944	0.750000
suprapubic_skin_female_adult_53_years	chr14	50159435	50159484	50159437	-	RAMPAGE_only	7	9	23	1.283161	3.725651	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.826087
suprapubic_skin_female_adult_53_years	chr17	60887271	60887274	60887272	+	High_confidence	4	7	10	0.557896	2.503258	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887278	60989988	BCAS3|ENST00000586484.1	+	60887278,60889694,60902619,60910531,60924406,60947218,60989970	60887447,60889771,60902703,60910702,60924500,60947352,60989988	0.700000
suprapubic_skin_female_adult_53_years	chr12	132782341	132782349	132782346	-	RAMPAGE_only	4	4	10	0.557896	2.947703	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132768914	132822311	GOLGA3|ENST00000450791.6	-	132768914,132774156,132775140,132776633,132776957,132777665,132780797,132782295,132784163,132786338,132786692,132789026,132791215,132795851,132796538,132798339,132801766,132804715,132807176,132807890,132813306,132816539,132821995	132773294,132774320,132775305,132776756,132777090,132777805,132780914,132782493,132784307,132786555,132786787,132789290,132791293,132796220,132796700,132798477,132801969,132805022,132807288,132808549,132813419,132816812,132822311	0.800000
suprapubic_skin_female_adult_53_years	chr14	92083317	92083345	92083344	-	RAMPAGE_only	4	4	10	0.557896	2.503258	chr14	92083332	92083554	SINE|MIR|MIRb	+	chr14	92082342	92106535	ATXN3|ENST00000526872.3	-	92082342,92083125,92093251,92093745,92096092,92096673,92106528	92082466,92083235,92093318,92093831,92096137,92096838,92106535	0.500000
suprapubic_skin_female_adult_53_years	chr12	643625	643636	643625	-	High_confidence	10	10	36	2.008425	4.786426	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	565359	643636	NINJ2|ENST00000433832.2	-	565359,643510	566178,643636	0.527778
suprapubic_skin_female_adult_53_years	chr9	20658338	20658349	20658348	+	High_confidence	12	16	44	2.454742	3.951014	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658336	20715448	STRG.81776.8	+	20658336,20694519,20715321	20658826,20694564,20715448	0.840909
suprapubic_skin_female_adult_53_years	chr17	38810316	38810354	38810332	-	High_confidence	12	13	34	1.896846	3.446544	chr17	38810300	38810417	LINE|L2|L2b	+	chr17	38800433	38810595	STRG.131475.7	-	38800433,38802699,38806296,38806764,38809701	38802206,38802861,38806395,38806976,38810595	0.970588
suprapubic_skin_female_adult_53_years	chr11	72824482	72824502	72824482	+	RAMPAGE_only	3	3	10	0.557896	2.646439	chr11	72824377	72824488	SINE|MIR|MIRc	-	chr11	72822233	72829595	STRG.98707.4	+	72822233,72822477,72824059,72825301,72826172,72826517,72826702,72827187,72828358,72828728,72828882,72829302	72822295,72822961,72824842,72825407,72826243,72826589,72826823,72827293,72828508,72828776,72828984,72829595	1.000000
suprapubic_skin_female_adult_53_years	chr5	172093420	172093501	172093420	-	RAMPAGE_only	4	4	27	1.506319	4.363713	chr5	172093338	172093392	DNA|hAT-Ac|OldhAT1	-	chr5	172064419	172106798	STRG.55719.2	-	172064419,172082325,172082960,172090231,172093696,172096425,172105655,172106619	172064812,172082505,172083084,172090362,172093960,172096560,172105737,172106798	0.962963
suprapubic_skin_female_adult_53_years	chr17	4143196	4143215	4143199	+	High_confidence	30	32	94	5.244222	5.426435	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.904255
suprapubic_skin_female_adult_53_years	chr6	36505073	36505091	36505073	-	RAMPAGE_only	5	5	13	0.725265	3.251629	chr6	36505057	36505226	DNA|hAT-Charlie|MER5B	+	chr6	36493891	36506728	STRG.58955.4	-	36493891,36497779,36498362,36499872,36504976	36496805,36497875,36498486,36499990,36506728	0.769231
suprapubic_skin_female_adult_53_years	chr16	63618044	63618046	63618045	-	High_confidence	13	25	26	1.450529	4.213661	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.653846
suprapubic_skin_female_adult_53_years	chr10	30337173	30337190	30337176	-	RAMPAGE_only	9	9	23	1.283161	3.820889	chr10	30337143	30337433	SINE|Alu|AluSp	+	chr10	30326563	30348977	MTPAP|ENST00000417581.1	-	30326563,30336802,30340225,30341467,30348856	30326635,30337027,30340450,30341640,30348977	0.695652
suprapubic_skin_female_adult_53_years	chr17	8310238	8310247	8310240	+	High_confidence	2	4	8	0.446317	2.807355	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.625000
suprapubic_skin_female_adult_53_years	chr7	154928503	154928506	154928503	+	High_confidence	7	7	12	0.669475	3.459432	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.916667
suprapubic_skin_female_adult_53_years	chr12	18325783	18325790	18325783	+	RAMPAGE_only	2	3	7	0.390527	2.521641	chr12	18325724	18325973	LINE|L2|L2a	-	chr12	18282043	18394322	STRG.103518.7	+	18282043,18286846,18290854,18293900,18313961,18320961,18325034,18343326,18346640,18362763,18371179,18381765,18391121	18282759,18286929,18291012,18294015,18314064,18321032,18338548,18343360,18346836,18362886,18371311,18381880,18394322	1.000000
suprapubic_skin_female_adult_53_years	chr1	174238848	174238894	174238887	+	RAMPAGE_only	7	7	27	1.506319	4.023465	chr1	174233266	174239293	LINE|L1|L1PA2	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.851852
suprapubic_skin_female_adult_53_years	chr12	95084962	95084963	95084962	-	RAMPAGE_only	6	6	6	0.334738	2.584963	chr12	95084834	95084983	SINE|MIR|MIRb	-	chr12	95076748	95217379	STRG.107440.2	-	95076748,95084497,95089568,95091706,95092698,95094591,95105006,95106953,95107562,95108347,95108502,95113650,95134738,95137521,95141387,95152810,95152925,95172599,95208842,95217224	95081556,95085908,95089696,95091809,95092845,95094694,95105086,95107037,95107631,95108419,95108561,95113701,95134826,95137678,95141539,95152841,95152993,95172744,95211267,95217379	1.000000
suprapubic_skin_female_adult_53_years	chr15	33194708	33194749	33194708	-	High_confidence	21	24	113	6.304224	5.395314	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.893805
suprapubic_skin_female_adult_53_years	chr2	55570032	55570039	55570038	-	RAMPAGE_only	8	8	18	1.004213	3.947703	chr2	55570014	55570259	SINE|Alu|AluSx3	+	chr2	55548378	55573718	STRG.18111.4	-	55548378,55558774,55564312,55564901,55568193	55550006,55558968,55564497,55565041,55573718	1.000000
suprapubic_skin_female_adult_53_years	chr5	134211772	134211806	134211805	-	RAMPAGE_only	10	10	29	1.617898	4.039149	chr5	134211476	134211773	SINE|Alu|AluSq2	-	chr5	134201858	134226142	STRG.53694.6	-	134201858,134205921	134202021,134226142	0.931034
suprapubic_skin_female_adult_53_years	chr3	14132307	14132329	14132307	+	RAMPAGE_only	2	2	8	0.446317	2.807355	chr3	14132226	14132423	LINE|CR1|L3	+	chr3	14125014	14143679	STRG.30010.5	+	14125014,14129411,14130886,14131579,14132545,14132865,14133738,14135157,14141592	14129085,14129561,14130956,14131674,14132595,14132935,14134891,14139297,14143679	0.750000
suprapubic_skin_female_adult_53_years	chr4	81154213	81154222	81154221	-	High_confidence	9	9	16	0.892634	3.500000	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	1.000000
suprapubic_skin_female_adult_53_years	chr7	6590230	6590281	6590246	+	High_confidence	6	6	45	2.510532	4.812210	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.533333
suprapubic_skin_female_adult_53_years	chr3	39407629	39407775	39407682	+	High_confidence	9	10	91	5.076853	5.401420	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.934066
suprapubic_skin_female_adult_53_years	chr3	135965673	135965749	135965723	+	High_confidence	36	55	286	15.955824	6.266517	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965743	136145384	STRG.35658.4	+	135965743,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136102182,136103376,136106322,136145384	0.951049
suprapubic_skin_female_adult_53_years	chr6	33652523	33652531	33652523	+	RAMPAGE_only	3	3	7	0.390527	2.584963	chr6	33652459	33652763	SINE|Alu|AluSg	-	chr6	33653715	33696569	STRG.58738.3	+	33653715,33657931,33658669,33659020,33659465,33662527,33662910,33663499,33663737,33664869,33665052,33665834,33667128,33667791,33668514,33668973,33670324,33670670,33671164,33672028,33673590,33674207,33675690,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33683206,33684019,33684356,33684597,33684773,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33655887,33658018,33658828,33659119,33659549,33662674,33663006,33663550,33663880,33664969,33665213,33665976,33667290,33667964,33668634,33669156,33670576,33670815,33671306,33672228,33673720,33674265,33675856,33676932,33677089,33677629,33678543,33678839,33680133,33680454,33680680,33682644,33683397,33684168,33684465,33684688,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696569	0.857143
suprapubic_skin_female_adult_53_years	chr1	29166018	29166060	29166037	-	RAMPAGE_only	5	5	24	1.338950	4.334963	chr1	29165912	29166153	SINE|tRNA-RTE|MamSINE1	-	chr1	29154696	29160563	SRSF4|ENST00000497015.5	-	29154696,29159373,29160374	29154910,29159486,29160563	0.750000
suprapubic_skin_female_adult_53_years	chr18	691380	691409	691408	-	RAMPAGE_only	10	10	18	1.004213	3.969816	chr18	691330	691629	SINE|Alu|AluJr	-	chr18	670323	693277	ENOSF1|ENST00000584259.6	-	670323,674160,675320,677344,677742,678695,683245,685920,688573,690548	673076,674406,675402,677444,677872,678737,683380,686008,688608,693277	0.888889
suprapubic_skin_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	9	9	9	0.502106	3.169925	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	1.000000
suprapubic_skin_female_adult_53_years	chr4	152638009	152638053	152638012	-	RAMPAGE_only	7	8	30	1.673688	2.981076	chr4	152637978	152638292	SINE|Alu|AluJo	+	chr4	152628634	152680012	STRG.46130.7	-	152628634,152643087,152652537,152652666,152679869	152640985,152644442,152652576,152652927,152680012	1.000000
suprapubic_skin_female_adult_53_years	chr14	23562559	23562644	23562627	-	High_confidence	4	4	31	1.729477	4.375222	chr14	23562620	23562761	SINE|Alu|FLAM_C	+	chr14	23561408	23563000	AP1G2|ENST00000556966.1	-	23561408,23561511,23561961,23562503	23561431,23561635,23562415,23563000	0.806452
suprapubic_skin_female_adult_53_years	chr6	25971764	25971803	25971764	+	RAMPAGE_only	7	7	19	1.060002	3.326360	chr6	25971431	25971852	LINE|L1|L1MB3	-	chr6	25962801	25991226	TRIM38|ENST00000357085.4	+	25962801,25963048,25966334,25969324,25971868,25973053,25973172,25983163	25962855,25963282,25966933,25969420,25972099,25973076,25973285,25991226	0.578947
suprapubic_skin_female_adult_53_years	chr14	100138787	100138811	100138794	+	RAMPAGE_only	4	4	14	0.781054	3.521641	chr14	100138741	100139027	LINE|L2|L2b	-	chr14	100019381	100140117	EVL|ENST00000544450.6	+	100019381,100084686,100097480,100123538,100126706,100128518,100129562,100132718,100135904,100137577,100137739	100019687,100084855,100097658,100123602,100126771,100128748,100129684,100132779,100135968,100137644,100140117	0.785714
suprapubic_skin_female_adult_53_years	chr15	41843128	41843150	41843128	+	RAMPAGE_only	3	3	8	0.446317	2.750000	chr15	41843081	41843340	SINE|Alu|AluSx1	-	chr15	41841828	41848140	PLA2G4B|ENST00000483748.5	+	41841828,41842192,41843675,41844470,41844847,41845202,41845637,41845942,41846202,41846668,41847336,41847648	41841949,41843223,41843811,41844607,41845070,41845320,41845775,41846047,41846382,41846835,41847523,41848140	0.750000
suprapubic_skin_female_adult_53_years	chr19	10555125	10555165	10555125	-	RAMPAGE_only	6	6	22	1.227371	3.913977	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	1.000000
suprapubic_skin_female_adult_53_years	chr16	29842050	29842085	29842084	+	RAMPAGE_only	3	4	14	0.781054	3.026987	chr16	29842127	29842270	SINE|Alu|AluJb	+	chr16	29830514	29848039	MVP|NM_001293204.1	+	29830514,29830877,29833732,29833934,29835703,29836721,29840177,29841595,29841914,29844492,29845862,29846157,29847345,29847761	29830674,29831073,29833856,29834066,29835798,29836958,29840459,29841840,29842112,29844879,29845979,29846253,29847385,29848039	0.928571
suprapubic_skin_female_adult_53_years	chr11	1883320	1883349	1883320	+	RAMPAGE_only	4	4	14	0.781054	3.039149	chr11	1883278	1883384	SINE|MIR|MIR1_Amn	-	chr11	1880676	1892267	LSP1|ENST00000485341.5	+	1880676,1881431,1883418,1883931,1884279,1884499,1886731,1887236,1887473,1891772	1881363,1881596,1883560,1884024,1884323,1884581,1886866,1887314,1887576,1892267	0.571429
suprapubic_skin_female_adult_53_years	chr3	11225963	11226026	11226025	+	High_confidence	6	6	35	1.952636	4.457575	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.628571
suprapubic_skin_female_adult_53_years	chr11	8138593	8138594	8138593	-	High_confidence	55	56	64	3.570534	5.127032	chr11	8138547	8139126	LTR|ERV1|LTR10C	+	chr11	8110243	8138559	RIC3|ENST00000524799.5	-	8110243,8110658,8126658,8137377,8138271	8110407,8111137,8126804,8137471,8138559	0.843750
suprapubic_skin_female_adult_53_years	chr20	62367056	62367116	62367056	-	High_confidence	11	16	92	5.132643	5.663749	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.978261
suprapubic_skin_female_adult_53_years	chr10	47743693	47743728	47743694	+	High_confidence	17	30	79	4.407378	5.506825	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.822785
suprapubic_skin_female_adult_53_years	chr11	7905671	7905781	7905748	-	High_confidence	12	15	110	6.136856	6.109703	chr11	7901509	7905722	LTR|ERVK|HERVK3-int	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.618182
suprapubic_skin_female_adult_53_years	chrX	41341198	41341305	41341204	+	High_confidence	8	8	37	2.064215	4.260280	chrX	41340986	41341284	SINE|Alu|AluSp	-	chrX	41341319	41347782	DDX3X|ENST00000642763.1	+	41341319,41342736,41343215,41343736,41344029,41344238,41345179,41345403,41346228,41346504,41346858,41347314,41347639	41342653,41342836,41343351,41343822,41344128,41344399,41345324,41345548,41346410,41346622,41347012,41347451,41347782	1.000000
suprapubic_skin_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	168	207	335	18.689515	6.179156	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.979104
suprapubic_skin_female_adult_53_years	chr19	52169746	52169766	52169746	-	High_confidence	2	2	10	0.557896	3.121928	chr19	52169654	52169811	SINE|Alu|AluJb	+	chr19	52165183	52169734	ZNF836|ENST00000602187.1	-	52165183,52168057,52169647	52165385,52168152,52169734	0.500000
suprapubic_skin_female_adult_53_years	chr16	56501084	56501112	56501111	-	High_confidence	3	3	13	0.725265	2.623517	chr16	56501063	56501298	SINE|Alu|AluYh3a3	+	chr16	56499785	56501176	BBS2|ENST00000566210.1	-	56499785,56500853	56499907,56501176	0.615385
suprapubic_skin_female_adult_53_years	chr17	28695341	28695399	28695341	+	RAMPAGE_only	1	1	12	0.669475	3.084963	chr17	28695199	28695350	SINE|MIR|MIR3	+	chr17	28662197	28701735	SUPT6H|ENST00000347486.8	+	28662197,28672756,28673370,28674282,28674536,28674969,28675400,28676156,28677714,28678075,28678544,28678820,28681255,28681881,28682726,28682941,28683267,28683620,28684585,28684843,28686338,28686653,28687087,28687303,28688090,28689353,28690081,28690920,28693695,28695351,28696843,28697619,28697905,28699780,28700172,28700345,28700940,28701438	28662342,28672858,28673510,28674441,28674613,28675162,28675485,28676430,28677816,28678192,28678634,28678963,28681404,28681980,28682856,28683092,28683422,28683816,28684725,28684961,28686415,28686789,28687225,28687471,28688218,28689561,28690229,28691063,28693836,28695547,28697082,28697733,28698030,28699893,28700250,28700512,28701128,28701735	1.000000
suprapubic_skin_female_adult_53_years	chr5	170267210	170267245	170267210	-	High_confidence	7	7	17	0.948423	3.500000	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.941176
suprapubic_skin_female_adult_53_years	chr12	120071457	120071496	120071457	+	High_confidence	2	3	8	0.446317	2.521641	chr12	120071441	120071576	LINE|L1|L1MC5	-	chr12	120071702	120093394	BICDL1|ENST00000548673.5	+	120071702,120072510,120074442,120080886,120089950,120092999	120071801,120072729,120074586,120081017,120090071,120093394	0.625000
suprapubic_skin_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	199	212	985	54.952752	7.037588	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.670051
suprapubic_skin_female_adult_53_years	chr11	32953965	32953984	32953983	+	RAMPAGE_only	4	4	10	0.557896	3.121928	chr11	32953932	32953995	LINE|CR1|L3	-	chr11	32934583	32975630	QSER1|ENST00000524678.1	+	32934583,32953856,32955295,32955987,32957868,32966299,32969045,32973396,32975247	32935435,32954179,32955412,32956121,32958086,32966437,32969143,32973549,32975630	0.800000
suprapubic_skin_female_adult_53_years	chr10	65570512	65570522	65570521	+	High_confidence	19	29	79	4.407378	5.586308	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570535	65585775	LINC01515|ENST00000608678.5	+	65570535,65571424,65572934,65581611,65585484	65570759,65571579,65573056,65581673,65585775	0.759494
suprapubic_skin_female_adult_53_years	chr11	67848695	67848710	67848701	-	High_confidence	15	15	41	2.287373	4.634184	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67846163	67848682	STRG.98303.1	-	67846163,67848565	67847989,67848682	0.512195
suprapubic_skin_female_adult_53_years	chr3	129399279	129399280	129399279	-	High_confidence	13	13	17	0.948423	3.852169	chr3	129399072	129399375	SINE|Alu|AluSx1	+	chr3	129382921	129399405	RPL32P3|ENST00000510078.5	-	129382921,129393634,129396216,129397039,129399007	129384218,129393795,129396420,129397140,129399405	0.647059
suprapubic_skin_female_adult_53_years	chr17	45629913	45629944	45629943	+	RAMPAGE_only	3	3	7	0.390527	2.521641	chr17	45629831	45630451	LINE|CR1|L3	-	chr17	45621907	45636344	LINC02210|ENST00000580220.2	+	45621907,45627375,45629903,45636282	45622041,45627682,45630158,45636344	0.857143
suprapubic_skin_female_adult_53_years	chr1	39556692	39556726	39556725	-	High_confidence	3	3	10	0.557896	3.121928	chr1	39556616	39556755	SINE|Alu|FLAM_C	+	chr1	39522471	39556723	PPIEL|ENST00000644305.1	-	39522471,39523561,39523806,39529054,39537190,39541719,39545732,39547578,39553117,39554348,39556598	39522505,39523697,39523896,39529164,39537343,39541841,39545857,39548951,39553144,39554392,39556723	1.000000
suprapubic_skin_female_adult_53_years	chr6	167271323	167271337	167271330	+	High_confidence	23	26	80	4.463168	5.105943	chr6	167271259	167271341	DNA|hAT-Charlie|MER5A	+	chr6	167271198	167291632	STRG.65498.5	+	167271198,167281012,167291438	167271458,167281161,167291632	0.787500
suprapubic_skin_female_adult_53_years	chr6	169689278	169689306	169689303	-	High_confidence	3	3	10	0.557896	3.169925	chr6	169689217	169689326	SINE|MIR|MIRb	+	chr6	169664176	169690015	STRG.65605.3	-	169664176,169664769,169672254,169688816,169689126	169664632,169670693,169672396,169689012,169690015	0.700000
suprapubic_skin_female_adult_53_years	chr22	37618014	37618023	37618022	+	RAMPAGE_only	6	6	11	0.613686	2.646439	chr22	37617840	37618146	SINE|Alu|AluSq	+	chr22	37608844	37632677	STRG.150594.3	+	37608844,37614189,37616921,37620237,37620812,37621615,37623326,37623551,37624968,37625796,37629461,37629997,37630902,37631995,37632404,37632600	37608903,37614274,37618546,37620361,37620913,37621696,37623467,37623633,37625076,37625949,37629526,37630170,37631099,37632165,37632515,37632677	0.909091
suprapubic_skin_female_adult_53_years	chr9	128330906	128330931	128330906	+	High_confidence	3	4	7	0.390527	2.807355	chr9	128330833	128331136	SINE|Alu|AluY	-	chr9	128330411	128334068	COQ4|ENST00000461102.1	+	128330411,128333473	128332943,128334068	0.857143
suprapubic_skin_female_adult_53_years	chr19	46203082	46203083	46203082	-	High_confidence	14	14	14	0.781054	3.093069	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.714286
suprapubic_skin_female_adult_53_years	chr19	38101126	38101177	38101176	+	RAMPAGE_only	3	3	14	0.781054	3.093069	chr19	38101212	38101377	LINE|L1|L1M5	+	chr19	38099981	38110315	SIPA1L3|ENST00000595384.1	+	38099981,38101051,38106288,38110226	38100150,38101226,38106640,38110315	0.928571
suprapubic_skin_female_adult_53_years	chr1	12256119	12256145	12256119	+	RAMPAGE_only	6	6	11	0.613686	3.459432	chr1	12256052	12256181	SINE|Alu|FLAM_C	+	chr1	12253733	12348973	STRG.762.4	+	12253733,12256332,12256986,12257934,12260692,12260947,12261900,12266880,12267844,12268705,12270993,12273002,12275824,12279498,12282704,12288222,12290997,12293523,12299201,12304505,12308430,12311453,12311812,12314114,12318071,12319496,12321808,12322535,12323705,12327647,12329828,12333225,12335704,12341782,12342898,12345373,12346604,12348822	12253826,12256503,12257087,12258103,12260794,12261149,12262080,12267011,12267920,12268876,12271124,12273135,12278038,12279650,12283736,12288313,12291124,12293704,12299384,12304728,12308641,12311625,12311925,12314327,12318337,12319630,12321964,12322746,12323780,12327854,12329918,12333366,12335827,12341885,12343051,12345509,12346652,12348973	0.727273
suprapubic_skin_female_adult_53_years	chr1	11655745	11655746	11655745	+	High_confidence	5	5	7	0.390527	2.521641	chr1	11655669	11655778	SINE|MIR|MIRb	-	chr1	11654909	11661349	FBXO44|ENST00000376760.5	+	11654909,11655669,11655805,11658266,11658735,11661129	11654952,11655699,11656100,11658364,11658871,11661349	0.571429
suprapubic_skin_female_adult_53_years	chr2	197590958	197590959	197590958	-	High_confidence	19	19	19	1.060002	3.681881	chr2	197590542	197592121	LTR|ERV1|LTR12C	-	chr2	197590555	197590968	STRG.25586.1	-	197590555	197590968	0.894737
suprapubic_skin_female_adult_53_years	chr9	92720813	92720814	92720813	-	RAMPAGE_only	52	53	69	3.849482	4.900064	chr9	92720689	92720791	DNA|TcMar-Tigger|Tigger19b	-	chr9	92711362	92764801	BICD2|NM_001003800.1	-	92711362,92717796,92718538,92720299,92722655,92729023,92764504	92715463,92717948,92719582,92720755,92722808,92729236,92764801	0.927536
suprapubic_skin_female_adult_53_years	chr21	36005313	36005320	36005313	+	High_confidence	4	5	8	0.446317	3.000000	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	1.000000
suprapubic_skin_female_adult_53_years	chr20	35004162	35004190	35004189	-	RAMPAGE_only	5	6	14	0.781054	3.700440	chr20	35004058	35004182	SINE|MIR|MIRb	-	chr20	34998810	35092807	STRG.144832.5	-	34998810,34999768,35005694,35006434,35007549,35008663,35010186,35013007,35016007,35021189,35035122,35044504,35049865,35054975,35057513,35069295,35078045,35092613	34999647,35004570,35005803,35006575,35007640,35008747,35010288,35013066,35016139,35021356,35035308,35044712,35049994,35055031,35057571,35069412,35078174,35092807	0.928571
suprapubic_skin_female_adult_53_years	chr16	21048703	21048704	21048703	-	High_confidence	27	28	29	1.617898	4.384517	chr16	21042672	21048703	LINE|L1|L1PA2	-	chr16	21037764	21048694	STRG.126250.1	-	21037764,21039851,21042026,21048605	21037980,21039943,21042203,21048694	0.517241
suprapubic_skin_female_adult_53_years	chr6	161101762	161101763	161101762	+	High_confidence	8	8	9	0.502106	2.750000	chr6	161101708	161101814	DNA|hAT-Charlie|MER20	-	chr6	161101032	161117384	MAP3K4|ENST00000536852.1	+	161101032,161102698,161106513,161107898,161108742,161109754,161111835,161112667,161115122,161116849	161101992,161102779,161106705,161107969,161108859,161109914,161111958,161112774,161115302,161117384	0.555556
suprapubic_skin_female_adult_53_years	chr2	241749347	241749399	241749347	+	RAMPAGE_only	3	3	20	1.115792	3.642150	chr2	241749253	241749384	LINE|L2|L2a	+	chr2	241734629	241756014	STRG.28543.6	+	241734629,241735132,241741032,241742434,241743621,241744708,241748864,241750150,241751245,241754630,241755044	241734695,241735516,241741090,241742574,241743815,241747703,241749929,241750294,241751388,241754746,241756014	0.950000
suprapubic_skin_female_adult_53_years	chr5	78388895	78388902	78388901	+	RAMPAGE_only	6	6	13	0.725265	3.392747	chr5	78388798	78388903	LINE|CR1|L3	-	chr5	78360627	78416635	SCAMP1|ENST00000511551.2	+	78360627,78370619,78388836,78415519,78416540	78360728,78370805,78388914,78415618,78416635	0.846154
suprapubic_skin_female_adult_53_years	chr21	31531105	31531110	31531105	-	RAMPAGE_only	5	5	21	1.171582	4.165894	chr21	31531021	31531216	LINE|CR1|CR1-16_AMi	-	chr21	31118415	31558977	TIAM1|ENST00000286827.7	-	31118415,31124521,31127064,31130212,31130889,31135932,31141117,31141324,31146894,31152635,31153065,31154246,31164961,31182420,31187000,31195223,31202907,31210044,31213397,31217552,31223405,31225725,31245487,31251741,31266009,31276731,31339242,31463982,31558926	31120837,31124694,31127152,31130315,31130948,31136041,31141236,31141504,31147003,31152761,31153134,31154426,31165065,31182645,31187087,31195305,31203012,31210215,31213472,31217699,31223591,31225950,31245660,31252189,31266983,31276908,31339422,31464035,31558977	0.714286
suprapubic_skin_female_adult_53_years	chr15	77285006	77285031	77285006	-	RAMPAGE_only	8	10	17	0.948423	3.625000	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.882353
suprapubic_skin_female_adult_53_years	chr2	196853278	196853376	196853321	-	High_confidence	4	4	34	1.896846	3.358069	chr2	196852387	196853938	LTR|ERV1|MER101-int	+	chr2	196842665	196853721	STRG.25396.7	-	196842665,196843887,196844523,196845881,196847002	196842825,196844075,196844574,196846017,196853721	0.970588
suprapubic_skin_female_adult_53_years	chr19	13006122	13006134	13006133	+	RAMPAGE_only	4	4	8	0.446317	2.750000	chr19	13005981	13006192	LINE|L2|L2a	-	chr19	13010278	13099377	STRG.138830.8	+	13010278,13025020,13073046,13073421,13073905,13075534,13081679,13090298,13094634	13012266,13025552,13073109,13073496,13074026,13075671,13081855,13090390,13099377	0.875000
suprapubic_skin_female_adult_53_years	chr21	38817963	38817974	38817973	+	RAMPAGE_only	13	13	24	1.338950	4.501629	chr21	38817983	38818117	SINE|MIR|MIRb	+	chr21	38816083	38824955	STRG.148399.6	+	38816083,38819502,38821585,38822673	38818646,38819766,38821704,38824955	0.875000
suprapubic_skin_female_adult_53_years	chr11	46873665	46873746	46873678	-	High_confidence	5	5	48	2.677901	5.070442	chr11	46873675	46873783	LINE|L2|L2c	+	chr11	46871524	46873754	LRP4|ENST00000527656.1	-	46871524,46873099,46873374	46871633,46873234,46873754	0.916667
suprapubic_skin_female_adult_53_years	chr10	46398693	46398710	46398709	+	High_confidence	3	3	7	0.390527	2.521641	chr10	46398649	46398833	LINE|L1|L1ME2	+	chr10	46398361	46454582	STRG.90320.14	+	46398361,46450047	46398793,46454582	0.714286
suprapubic_skin_female_adult_53_years	chr1	107586245	107586333	107586269	-	RAMPAGE_only	12	14	80	4.463168	2.996794	chr1	107586071	107586344	LINE|L2|L2a	+	chr1	107572974	107688504	STRG.7620.7	-	107572974,107609930,107617566,107642618,107688380	107603163,107609965,107617632,107642755,107688504	0.987500
suprapubic_skin_female_adult_53_years	chr17	2975656	2975667	2975666	+	RAMPAGE_only	2	3	8	0.446317	2.521641	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.750000
suprapubic_skin_female_adult_53_years	chr5	33297923	33298000	33297923	-	High_confidence	5	5	29	1.617898	4.582119	chr5	33297738	33298188	LTR|ERV1|MER48	-	chr5	33023054	33297910	AC010343.3|ENST00000510327.1	-	33023054,33263499,33297731	33023327,33263666,33297910	0.724138
suprapubic_skin_female_adult_53_years	chr14	41911248	41911265	41911264	+	High_confidence	6	6	11	0.613686	3.095795	chr14	41908983	41911704	LINE|L1|L1PA3	-	chr14	41911277	41912087	STRG.114329.1	+	41911277	41912087	0.909091
suprapubic_skin_female_adult_53_years	chr10	47985972	47985973	47985972	-	RAMPAGE_only	10	10	12	0.669475	3.084963	chr10	47985815	47986226	LINE|L1|L1ME2	-	chr10	47985518	47991850	AC245041.2|ENST00000610809.1	-	47985518,47991679	47987309,47991850	0.833333
suprapubic_skin_female_adult_53_years	chr13	45206633	45206634	45206633	+	High_confidence	7	7	10	0.557896	2.725481	chr13	45206646	45206717	SINE|MIR|MIRb	+	chr13	45206354	45267333	GTF2F2|ENST00000494087.5	+	45206354,45252870,45267232	45207505,45252970,45267333	0.900000
suprapubic_skin_female_adult_53_years	chr2	206145231	206145237	206145236	-	RAMPAGE_only	3	3	7	0.390527	2.521641	chr2	206145187	206145423	SINE|Alu|AluJr	-	chr2	206123955	206146724	STRG.26300.4	-	206123955,206126538,206126709,206130087,206132944,206138484,206141940,206142685,206144017,206144891	206124276,206126611,206127972,206130242,206133105,206138614,206142069,206142831,206144132,206146724	0.857143
suprapubic_skin_female_adult_53_years	chr1	16951011	16951059	16951011	+	RAMPAGE_only	5	5	31	1.729477	4.280226	chr1	16950976	16951061	DNA|hAT-Ac|OldhAT1	+	chr1	16953156	16970742	STRG.796.4	+	16953156,16954733,16955311,16955996,16958582,16960757,16965722,16965998,16966407,16968202,16969115,16969784,16970252,16970635	16954357,16954877,16955550,16957090,16958750,16961130,16965892,16966119,16966571,16968418,16969340,16969934,16970453,16970742	0.838710
suprapubic_skin_female_adult_53_years	chr1	24666734	24666740	24666739	+	High_confidence	3	3	7	0.390527	2.584963	chr1	24666479	24666789	SINE|Alu|AluSx1	+	chr1	24666554	24669264	SRRM1|ENST00000489130.2	+	24666554,24669122	24666925,24669264	0.857143
suprapubic_skin_female_adult_53_years	chr2	201163768	201163779	201163778	+	RAMPAGE_only	4	4	8	0.446317	2.750000	chr2	201163729	201163784	SINE|MIR|MIRc	-	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	1.000000
suprapubic_skin_female_adult_53_years	chr3	180711376	180711377	180711376	-	RAMPAGE_only	9	9	9	0.502106	2.947703	chr3	180711314	180711531	DNA|hAT?|MER99	-	chr3	180614007	180737874	CCDC39|ENST00000476379.5	-	180614007,180616280,180616515,180616825,180619258,180631468,180641992,180644119,180647078,180648164,180651400,180652162,180654761,180659451,180659676,180660569,180661860,180663866,180679290,180679607,180708767,180711192,180711309,180725514,180737492	180615077,180616363,180616695,180616966,180619365,180631592,180642201,180644257,180647243,180648359,180651533,180652266,180654953,180659580,180659769,180660728,180662007,180663986,180679382,180679799,180708904,180711219,180711382,180725573,180737874	0.888889
suprapubic_skin_female_adult_53_years	chr14	30598278	30598287	30598278	+	High_confidence	6	6	12	0.669475	2.617492	chr14	30598098	30598399	SINE|Alu|AluSx1	+	chr14	30598557	30615515	G2E3|ENST00000548934.1	+	30598557,30601769,30601998,30612206,30615348	30598599,30601894,30602131,30612379,30615515	0.833333
suprapubic_skin_female_adult_53_years	chr1	39956844	39956870	39956854	+	RAMPAGE_only	16	17	51	2.845269	4.324373	chr1	39956705	39956945	SINE|Alu|AluY	+	chr1	39955157	39968614	STRG.3069.12	+	39955157,39957086,39965210,39965470,39965856,39968333	39955385,39958825,39965334,39965549,39967916,39968614	0.764706
suprapubic_skin_female_adult_53_years	chr19	52616811	52616830	52616829	-	RAMPAGE_only	6	6	17	0.948423	3.875000	chr19	52616561	52616863	SINE|Alu|AluSp	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	0.941176
suprapubic_skin_female_adult_53_years	chr16	11895411	11895412	11895411	-	High_confidence	7	7	9	0.502106	2.947703	chr16	11895148	11895448	SINE|Alu|AluSq2	+	chr16	11890792	11895284	GSPT1|ENST00000567631.1	-	11890792,11894953	11891139,11895284	0.888889
suprapubic_skin_female_adult_53_years	chr12	105229826	105229866	105229856	-	High_confidence	5	5	20	1.115792	4.021928	chr12	105229766	105230079	SINE|Alu|AluSq2	-	chr12	105211288	105229860	APPL2|ENST00000549056.1	-	105211288,105217068,105217665,105229124,105229627	105211317,105217140,105217725,105229223,105229860	0.800000
suprapubic_skin_female_adult_53_years	chr1	178309931	178309957	178309956	+	RAMPAGE_only	8	8	16	0.892634	3.773557	chr1	178309765	178310059	DNA|TcMar-Tigger|Tigger9b	-	chr1	178308763	178439589	STRG.10895.6	+	178308763,178390099,178420510,178439421	178310012,178390206,178420620,178439589	0.625000
suprapubic_skin_female_adult_53_years	chr14	21020044	21020050	21020047	-	High_confidence	11	11	26	1.450529	4.183465	chr14	21020013	21020322	SINE|Alu|AluSg4	+	chr14	21017994	21020109	NDRG2|ENST00000557416.5	-	21017994,21018203,21018456,21018626,21018762,21019115,21019638,21019919	21018038,21018239,21018504,21018663,21018814,21019160,21019742,21020109	0.884615
suprapubic_skin_female_adult_53_years	chr1	156252923	156252931	156252923	-	High_confidence	3	3	8	0.446317	2.807355	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.500000
suprapubic_skin_female_adult_53_years	chr17	76015708	76015709	76015708	-	RAMPAGE_only	19	20	26	1.450529	4.501629	chr17	76015708	76015861	SINE|MIR|MIRb	+	chr17	76007080	76027231	EVPL|ENST00000586740.1	-	76007080,76011575,76011771,76012005,76014425,76014915,76015226,76015449,76017738,76018094,76018445,76018913,76019527,76021467,76021673,76021866,76022188,76022412,76023291,76023499,76024020,76027100	76010543,76011668,76011882,76012089,76014576,76015109,76015365,76015628,76017911,76018258,76018600,76019060,76019653,76021563,76021781,76022028,76022227,76022538,76023418,76023654,76024120,76027231	0.653846
suprapubic_skin_female_adult_53_years	chr2	219217734	219217735	219217734	-	RAMPAGE_only	5	5	8	0.446317	2.750000	chr2	219217658	219217684	DNA|hAT-Ac|OldhAT1	-	chr2	219209765	219218990	ABCB6|NM_005689.2	-	219209765,219210229,219210380,219210710,219210933,219212386,219213007,219213240,219213438,219213589,219213825,219214120,219214388,219214960,219215996,219216363,219216651,219217669,219218124	219210046,219210298,219210475,219210823,219211108,219212491,219213065,219213326,219213502,219213666,219213951,219214186,219214498,219215082,219216180,219216465,219216832,219217807,219218990	0.750000
suprapubic_skin_female_adult_53_years	chr2	96303166	96303280	96303166	-	RAMPAGE_only	35	36	197	10.990550	6.201104	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
suprapubic_skin_female_adult_53_years	chr12	46367595	46367624	46367606	-	High_confidence	12	19	52	2.901059	4.931663	chr12	46367602	46367794	SINE|MIR|MIRc	+	chr12	46364441	46367410	SLC38A2|ENST00000548870.5	-	46364441,46364643,46365106,46366863,46367075,46367266	46364556,46364702,46365189,46366945,46367168,46367410	0.557692
suprapubic_skin_female_adult_53_years	chr17	60887052	60887084	60887083	+	High_confidence	4	5	12	0.669475	3.277613	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.750000
suprapubic_skin_female_adult_53_years	chr5	127770523	127770531	127770523	+	RAMPAGE_only	3	3	10	0.557896	3.121928	chr5	127770400	127770772	LTR|ERVL-MaLR|MLT1K-int	+	chr5	127703388	127941517	CCDC192|NM_001317938.1	+	127703388,127707708,127754267,127797102,127798105,127875537,127941181	127703507,127707760,127754375,127797234,127798162,127875661,127941517	0.600000
suprapubic_skin_female_adult_53_years	chrX	73837439	73837504	73837439	-	RAMPAGE_only	23	23	91	5.076853	4.041318	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
suprapubic_skin_female_adult_53_years	chr21	33448853	33448876	33448853	-	High_confidence	11	12	24	1.338950	3.732159	chr21	33448743	33448924	SINE|Alu|AluJo	+	chr21	33432484	33448964	TMEM50B|ENST00000484377.5	-	33432484,33436882,33439213,33448781	33432802,33436992,33439297,33448964	0.916667
suprapubic_skin_female_adult_53_years	chr7	47959114	47959172	47959171	-	RAMPAGE_only	4	4	16	0.892634	3.500000	chr7	47958782	47960388	Retroposon|SVA|SVA_D	+	chr7	47957874	47960356	STRG.68150.1	-	47957874	47960356	0.937500
suprapubic_skin_female_adult_53_years	chr17	28673019	28673024	28673019	+	High_confidence	2	2	7	0.390527	2.807355	chr17	28672868	28673167	SINE|Alu|AluSx	+	chr17	28673401	28674999	SUPT6H|ENST00000584312.1	+	28673401,28674282,28674536,28674969	28673618,28674441,28674613,28674999	0.571429
suprapubic_skin_female_adult_53_years	chr11	61322596	61322607	61322606	-	RAMPAGE_only	5	5	9	0.502106	2.947703	chr11	61322606	61322747	DNA|hAT-Charlie|Charlie4z	+	chr11	61321254	61326897	DDB1|ENST00000539712.5	-	61321254,61322295,61323010,61323978,61325610,61326778	61321697,61322412,61323094,61324137,61325708,61326897	1.000000
suprapubic_skin_female_adult_53_years	chr20	63982711	63982740	63982737	+	RAMPAGE_only	4	4	12	0.669475	3.459432	chr20	63982478	63982815	LINE|L2|L2	-	chr20	63981134	64033100	PRPF6|ENST00000266079.4	+	63981134,63983046,63984906,63993406,63994915,63995326,63999044,63999602,64001076,64010199,64011284,64016722,64022756,64024554,64025938,64026981,64027602,64028477,64029376,64031917,64032840	63981316,63983215,63985025,63993485,63995092,63995482,63999139,63999759,64001239,64010318,64011503,64016845,64022878,64024693,64026058,64027158,64027736,64028569,64029491,64032044,64033100	0.500000
suprapubic_skin_female_adult_53_years	chr17	28527126	28527147	28527126	+	RAMPAGE_only	3	3	15	0.836844	3.640224	chr17	28527042	28527134	SINE|MIR|MIR1_Amn	+	chr17	28524465	28538896	STRG.130961.6	+	28524465,28529093,28530748,28534330,28534706,28537116	28527361,28529224,28530845,28534538,28535198,28538896	0.800000
suprapubic_skin_female_adult_53_years	chr16	53466713	53466714	53466713	+	High_confidence	28	28	36	2.008425	3.897300	chr16	53466281	53466801	DNA|hAT-Charlie|MER1A	-	chr16	53466773	53470257	RBL2|ENST00000562837.1	+	53466773,53469915	53467169,53470257	0.972222
suprapubic_skin_female_adult_53_years	chr1	179877322	179877344	179877343	-	High_confidence	5	5	13	0.725265	3.418296	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179843930	179877772	STRG.11021.1	-	179843930,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877772	0.692308
suprapubic_skin_female_adult_53_years	chr19	24042383	24042384	24042383	+	RAMPAGE_only	28	28	31	1.729477	4.139572	chr19	24041131	24042696	LTR|ERV1|LTR12C	+	chr19	24040868	24129638	STRG.139776.1	+	24040868,24046183,24049404,24105939,24106547,24126253	24042722,24046279,24049548,24106066,24106643,24129638	0.967742
suprapubic_skin_female_adult_53_years	chr5	732064	732089	732067	-	High_confidence	3	3	10	0.557896	2.921928	chr5	731380	732042	LINE|L1|L1M4	-	chr5	710359	732671	ZDHHC11B|ENST00000522356.1	-	710359,716800,730433,731961	712282,716865,730468,732671	0.900000
suprapubic_skin_female_adult_53_years	chr11	72818645	72818646	72818645	+	RAMPAGE_only	185	195	198	11.046340	4.714984	chr11	72818574	72818683	SINE|MIR|MIRb	-	chr11	72816744	72823286	STRG.98707.13	+	72816744,72817755,72822043,72822477	72816827,72821741,72822295,72823286	0.984848
suprapubic_skin_female_adult_53_years	chr22	49657461	49657484	49657461	-	High_confidence	4	4	12	0.669475	3.251629	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49414523	49657504	C22orf34|ENST00000414287.5	-	49414523,49416601,49416814,49440875,49657404	49416035,49416735,49416928,49441212,49657504	0.583333
suprapubic_skin_female_adult_53_years	chr5	181238725	181238748	181238746	-	High_confidence	5	7	12	0.669475	3.084963	chr5	181238522	181238828	SINE|Alu|AluSx1	+	chr5	181236927	181238663	RACK1|ENST00000514455.5	-	181236927,181237608,181238098	181237042,181237719,181238663	1.000000
suprapubic_skin_female_adult_53_years	chr12	105233192	105233220	105233219	-	High_confidence	5	5	10	0.557896	2.641604	chr12	105233175	105233274	LINE|L2|L2c	+	chr12	105177109	105233154	APPL2|ENST00000547809.5	-	105177109,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105233090	105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105233154	0.500000
suprapubic_skin_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	11	11	11	0.613686	3.095795	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.818182
suprapubic_skin_female_adult_53_years	chr11	119046586	119046632	119046603	-	RAMPAGE_only	5	7	22	1.227371	3.621928	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.863636
suprapubic_skin_female_adult_53_years	chr22	25032338	25032379	25032378	+	RAMPAGE_only	6	7	20	1.115792	4.021928	chr22	25032214	25032434	SINE|MIR|MIRc	-	chr22	25027973	25197448	KIAA1671|NM_001145206.1	+	25027973,25032608,25038759,25049229,25170819,25174239,25177347,25181698,25184976,25190701,25192405	25029540,25032696,25041525,25049364,25170938,25174489,25177522,25181823,25185119,25190784,25197448	0.950000
suprapubic_skin_female_adult_53_years	chr1	151038226	151038240	151038226	+	High_confidence	3	6	10	0.557896	2.921928	chr1	151038092	151038395	SINE|Alu|AluJb	+	chr1	151038398	151043068	BNIPL|ENST00000392802.3	+	151038398,151038795,151042955	151038564,151039026,151043068	0.500000
suprapubic_skin_female_adult_53_years	chr20	34519418	34519419	34519418	+	RAMPAGE_only	7	9	9	0.502106	2.641604	chr20	34519417	34519502	SINE|Alu|AluJb	+	chr20	34516454	34540958	DYNLRB1|ENST00000374846.3	+	34516454,34526267,34534627,34540580	34516876,34526343,34534795,34540958	1.000000
suprapubic_skin_female_adult_53_years	chr18	30991809	30991967	30991966	-	RAMPAGE_only	287	287	950	53.000116	6.318379	chr18	30991883	30992175	SINE|Alu|AluY	+	chr18	30990007	31042741	DSC3|ENST00000360428.8	-	30990007,30996790,31001617,31004141,31006906,31008015,31008268,31018070,31018665,31022335,31024348,31025759,31029508,31030972,31032191,31042591	30994372,30997048,31001739,31004366,31007131,31008158,31008525,31018256,31018800,31022502,31024493,31025915,31029628,31031172,31032276,31042741	0.990526
suprapubic_skin_female_adult_53_years	chr8	142344158	142344182	142344158	-	RAMPAGE_only	4	4	12	0.669475	2.913977	chr8	142344146	142344350	DNA|DNA|UCON8	-	chr8	142212166	142354763	TSNARE1|ENST00000520166.5	-	142212166,142229472,142274780,142284412,142300485,142314383,142315002,142318543,142330900,142331753,142343965,142345742,142354636	142212313,142229579,142274863,142284485,142300647,142314440,142315092,142318634,142330970,142331831,142344472,142345892,142354763	0.916667
suprapubic_skin_female_adult_53_years	chr17	64486088	64486110	64486088	-	RAMPAGE_only	2	2	9	0.502106	2.500000	chr17	64485909	64486046	SINE|Alu|AluSx3	-	chr17	64477647	64487474	STRG.133358.2	-	64477647,64480288,64485727	64477988,64482999,64487474	0.888889
suprapubic_skin_female_adult_53_years	chr7	107580245	107580265	107580245	+	High_confidence	118	118	505	28.173746	6.619650	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.922772
suprapubic_skin_female_adult_53_years	chr2	241687922	241687940	241687922	+	High_confidence	3	3	7	0.390527	2.807355	chr2	241687876	241688028	SINE|MIR|MIR	+	chr2	241687084	241721805	ING5|ENST00000636051.1	+	241687084,241689837,241704652,241709215,241711376,241711977,241719482,241719975	241688062,241690653,241704724,241709382,241711488,241712071,241719612,241721805	1.000000
suprapubic_skin_female_adult_53_years	chr2	200889254	200889318	200889293	-	High_confidence	4	4	24	1.338950	4.334963	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889276	PPIL3|ENST00000465823.5	-	200870955,200876918,200881420,200885697,200887612,200888955	200871521,200877037,200881488,200885772,200887685,200889276	0.791667
suprapubic_skin_female_adult_53_years	chr11	64807557	64807559	64807557	-	RAMPAGE_only	3	4	7	0.390527	2.584963	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64804333	64810132	MEN1|ENST00000377313.5	-	64804333,64805033,64805634,64806231,64807010,64807178,64807551,64807890,64809649	64804816,64805198,64805770,64806368,64807098,64807219,64807680,64808099,64810132	0.714286
suprapubic_skin_female_adult_53_years	chr16	10532113	10532150	10532117	-	RAMPAGE_only	4	7	24	1.338950	4.303509	chr16	10532094	10532204	DNA|hAT-Charlie|MER5A	-	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.958333
suprapubic_skin_female_adult_53_years	chr19	51023462	51023470	51023462	-	High_confidence	9	10	19	1.060002	3.461320	chr19	51023384	51023684	SINE|Alu|AluSx	-	chr19	51022235	51024211	KLK11|ENST00000593681.5	-	51022235,51023091,51024044	51022664,51023228,51024211	0.842105
suprapubic_skin_female_adult_53_years	chr17	56998309	56998329	56998309	+	High_confidence	2	4	10	0.557896	2.725481	chr17	56998031	56998325	SINE|Alu|AluSc	+	chr17	56998290	57006586	SCPEP1|ENST00000570479.1	+	56998290,57000854,57002017,57006172	56998498,57000992,57002181,57006586	0.900000
suprapubic_skin_female_adult_53_years	chr16	29515828	29515829	29515828	-	RAMPAGE_only	18	19	24	1.338950	3.795089	chr16	29515801	29515907	DNA|hAT-Charlie|Charlie19a	+	chr16	29491502	29537415	STRG.126768.5	-	29491502,29491774,29495478,29505472,29528416,29528950,29530070,29533044,29533394,29536027,29537278	29491662,29491874,29495607,29527687,29528576,29529098,29530180,29533246,29533537,29536182,29537415	0.916667
suprapubic_skin_female_adult_53_years	chr11	120472948	120472982	120472959	+	High_confidence	2	2	9	0.502106	2.750000	chr11	120472954	120473011	LINE|L2|L2b	-	chr11	120473863	120489034	STRG.101572.11	+	120473863,120476660,120477218,120477446,120478155,120479959,120481259,120484437,120485066	120475507,120476748,120477305,120477526,120478389,120480430,120481576,120484507,120489034	0.555556
suprapubic_skin_female_adult_53_years	chr9	33259095	33259126	33259095	-	RAMPAGE_only	3	4	13	0.725265	3.418296	chr9	33259078	33259386	SINE|Alu|AluSz	+	chr9	33255218	33260441	STRG.82122.7	-	33255218,33255864,33256800	33255308,33255927,33260441	0.769231
suprapubic_skin_female_adult_53_years	chr1	109670226	109670227	109670226	+	RAMPAGE_only	33	33	38	2.120005	4.042933	chr1	109669639	109670357	LTR|ERV1|LTR12_	-	chr1	109668112	109674836	STRG.7795.11	+	109668112,109668424,109668924,109669289,109669470,109671472,109674746	109668151,109668500,109668989,109669371,109671382,109671583,109674836	0.947368
suprapubic_skin_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	105	106	106	5.913697	4.152592	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.981132
suprapubic_skin_female_adult_53_years	chr15	45153825	45153862	45153861	+	RAMPAGE_only	7	7	19	1.060002	3.572431	chr15	45153736	45153910	SINE|Alu|AluSx	+	chr15	45151828	45160990	DUOX1|ENST00000559716.6	+	45151828,45152285,45153379,45153950,45155801,45160836	45152052,45152516,45153479,45154000,45155929,45160990	0.526316
suprapubic_skin_female_adult_53_years	chr9	15177947	15177973	15177947	-	RAMPAGE_only	24	24	53	2.956849	4.574724	chr9	15177869	15178168	SINE|Alu|AluY	-	chr9	15171563	15188065	TTC39B|ENST00000380853.1	-	15171563,15175018,15177696,15182306,15185279,15186943,15187970	15172109,15175135,15177814,15182415,15185528,15187035,15188065	0.754717
suprapubic_skin_female_adult_53_years	chr20	3873734	3873812	3873811	+	RAMPAGE_only	7	12	51	2.845269	5.011842	chr20	3873828	3874352	LINE|L1|L1ME3A	+	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.921569
suprapubic_skin_female_adult_53_years	chr7	100349584	100349655	100349584	+	RAMPAGE_only	6	6	19	1.060002	3.683542	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100338176	100350158	STAG3L5P|ENST00000493499.1	+	100338176,100338772,100345864,100349716	100338264,100338889,100345968,100350158	0.842105
suprapubic_skin_female_adult_53_years	chr6	159231176	159231177	159231176	-	RAMPAGE_only	10	10	11	0.613686	3.121928	chr6	159231093	159231395	SINE|Alu|AluYb8	+	chr6	158765747	158819407	STRG.65236.4	-	158765747,158767260,158769325,158769783,158770763,158771243,158784643,158785308,158787107,158789287,158818081,158819316	158767078,158767512,158769418,158769944,158770894,158783666,158784727,158785583,158787203,158789371,158818166,158819407	0.909091
suprapubic_skin_female_adult_53_years	chr13	32404336	32404386	32404336	-	RAMPAGE_only	4	4	11	0.613686	2.845351	chr13	32404193	32404301	DNA?|DNA?|MER131	-	chr13	32401676	32405920	STRG.109990.22	-	32401676	32405920	1.000000
suprapubic_skin_female_adult_53_years	chr15	101075982	101076010	101076009	-	High_confidence	6	8	21	1.171582	3.621928	chr15	101075936	101076086	LTR|ERV1|HERVH-int	+	chr15	101075703	101075962	STRG.124766.1	-	101075703	101075962	0.523810
suprapubic_skin_female_adult_53_years	chr9	128684476	128684493	128684476	-	High_confidence	7	7	22	1.227371	4.061482	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683729	128684709	STRG.87420.1	-	128683729	128684709	0.909091
suprapubic_skin_female_adult_53_years	chr1	10098598	10098619	10098598	+	RAMPAGE_only	5	5	9	0.502106	2.500000	chr1	10098450	10098763	LTR|ERVL-MaLR|MLT1I	+	chr1	10100860	10103185	UBE4B|ENST00000462658.1	+	10100860,10102947	10101195,10103185	0.555556
suprapubic_skin_female_adult_53_years	chr9	84290471	84290522	84290471	-	RAMPAGE_only	7	7	16	0.892634	3.155639	chr9	84290379	84290546	DNA|hAT-Charlie|MER5A	+	chr9	84276342	84291542	STRG.84286.1	-	84276342,84279264,84279974,84280800,84285344,84285942,84288047,84290153	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84291542	1.000000
suprapubic_skin_female_adult_53_years	chr11	46869306	46869434	46869369	-	RAMPAGE_only	19	19	70	3.905272	5.311140	chr11	46869247	46869503	LINE|L2|L2c	+	chr11	46856998	46884638	STRG.97751.4	-	46856998,46862605,46864447,46865118,46867978,46868599,46868987,46873099,46873374,46875455,46875803,46876465,46876743,46877198,46878906,46879125,46881701,46883870	46859315,46862747,46864535,46865186,46868114,46868713,46871633,46873234,46875103,46875681,46875966,46876637,46876830,46877339,46879038,46879315,46881903,46884638	0.971429
suprapubic_skin_female_adult_53_years	chr17	771440	771444	771440	-	High_confidence	3	3	11	0.613686	3.121928	chr17	771436	771586	LINE|L1|L1ME4a	+	chr17	760072	771404	GLOD4|ENST00000573137.1	-	760072,769868,770043,771324	760238,769955,770157,771404	0.636364
suprapubic_skin_female_adult_53_years	chr17	40489033	40489118	40489117	-	RAMPAGE_only	11	11	106	5.913697	5.612676	chr17	40489005	40489105	SINE|MIR|MIR3	-	chr17	40475827	40501597	TNS4|ENST00000254051.10	-	40475827,40478306,40478579,40479673,40480699,40482128,40482323,40484483,40484920,40487035,40488545,40495986,40501533	40477729,40478333,40478648,40479842,40480768,40482206,40482416,40484609,40485007,40487460,40488969,40496520,40501597	0.820755
suprapubic_skin_female_adult_53_years	chr9	33259163	33259179	33259163	-	RAMPAGE_only	4	4	13	0.725265	3.026987	chr9	33259078	33259386	SINE|Alu|AluSz	+	chr9	33255218	33260441	STRG.82122.7	-	33255218,33255864,33256800	33255308,33255927,33260441	1.000000
suprapubic_skin_female_adult_53_years	chr3	180782120	180782124	180782120	-	RAMPAGE_only	7	7	13	0.725265	3.251629	chr3	180780604	180782114	LINE|L1|L1PA15	-	chr3	180707588	180870178	LOC101928882|NR_109986.1	-	180707588,180711192,180711309,180725514,180733478,180734486,180737492,180747879,180748245,180751347,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180733682,180734606,180737814,180748043,180748319,180751410,180782124,180810470,180847624,180870178	0.923077
suprapubic_skin_female_adult_53_years	chr20	45833293	45833310	45833307	-	High_confidence	3	5	12	0.669475	2.845351	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.916667
suprapubic_skin_female_adult_53_years	chr7	64917032	64917086	64917085	+	RAMPAGE_only	6	6	17	0.948423	3.625000	chr7	64917079	64917228	DNA|hAT-Charlie|MER5A1	+	chr7	64903287	64930966	ZNF273|ENST00000395375.3	+	64903287,64917029,64917580,64918196,64927653	64903419,64917118,64917707,64918292,64930966	0.882353
suprapubic_skin_female_adult_53_years	chr17	69314780	69314792	69314780	-	High_confidence	2	2	7	0.390527	2.584963	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	0.857143
suprapubic_skin_female_adult_53_years	chr16	22349923	22349930	22349923	-	RAMPAGE_only	2	2	7	0.390527	2.584963	chr16	22349906	22350203	SINE|Alu|AluSq2	+	chr16	22347633	22374437	CDR2|ENST00000561630.1	-	22347633,22349278,22349700,22374230	22347823,22349443,22349849,22374437	0.571429
suprapubic_skin_female_adult_53_years	chr19	58306086	58306116	58306086	+	High_confidence	7	7	21	1.171582	3.921928	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.714286
suprapubic_skin_female_adult_53_years	chr7	143853164	143853175	143853174	-	RAMPAGE_only	6	7	14	0.781054	3.334679	chr7	143853075	143853314	SINE|Alu|AluJr	-	chr7	143851367	143885373	TCAF1|NM_001206941.1	-	143851367,143857099,143858823,143860207,143861094,143862415,143862801,143885209	143854142,143857350,143859161,143860447,143861308,143862513,143863796,143885373	0.928571
suprapubic_skin_female_adult_53_years	chr1	39567913	39567926	39567913	-	High_confidence	6	6	12	0.669475	2.625815	chr1	39567903	39567975	DNA|hAT-Charlie|MER5A	+	chr1	39564384	39568856	PABPC4|ENST00000525669.5	-	39564384,39565105,39567750,39568801	39564542,39565378,39567846,39568856	0.916667
suprapubic_skin_female_adult_53_years	chr2	72032808	72032825	72032814	-	High_confidence	19	20	55	3.068428	5.085639	chr2	72032754	72032857	SINE|MIR|MIRc	+	chr2	72031506	72032274	STRG.19728.4	-	72031506	72032274	0.836364
suprapubic_skin_female_adult_53_years	chr1	75375985	75376031	75375985	-	High_confidence	5	5	13	0.725265	3.188722	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75202034	75376227	STRG.5702.1	-	75202034,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75211552,75213793,75213989,75214678,75215857,75217960,75218595,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75376227	0.769231
suprapubic_skin_female_adult_53_years	chr17	2039668	2039693	2039668	+	High_confidence	1	1	6	0.334738	2.584963	chr17	2039371	2039676	SINE|Alu|AluY	-	chr17	2039552	2040481	DPH1|ENST00000575998.1	+	2039552,2040217	2039823,2040481	0.666667
suprapubic_skin_female_adult_53_years	chr2	224529684	224529685	224529684	-	RAMPAGE_only	9	9	14	0.781054	3.085055	chr2	224529658	224529709	DNA|hAT-Charlie|MER102c	-	chr2	224517986	224549326	STRG.27509.11	-	224517986,224547920	224535641,224549326	0.857143
suprapubic_skin_female_adult_53_years	chr21	46568221	46568249	46568221	+	RAMPAGE_only	2	2	7	0.390527	2.584963	chr21	46568238	46568533	SINE|Alu|AluY	+	chr21	46563659	46569708	DIP2A|ENST00000479654.1	+	46563659,46565712,46566559,46567369	46563932,46565887,46566683,46569708	0.714286
suprapubic_skin_female_adult_53_years	chr9	101385007	101385008	101385007	-	High_confidence	12	12	12	0.669475	2.855389	chr9	101384858	101386000	LTR|ERVK|MER11A	-	chr9	101360416	101385005	BAAT|NM_001701.3	-	101360416,101368119,101370938,101384854	101363015,101368322,101371463,101385005	0.833333
suprapubic_skin_female_adult_53_years	chr19	49879213	49879229	49879213	+	High_confidence	2	4	8	0.446317	2.521641	chr19	49879146	49879251	LINE|L2|L2b	-	chr19	49878549	49888748	TBC1D17|ENST00000596243.5	+	49878549,49880278,49881267,49882040,49882241,49882763,49882972,49883650,49884252,49884458,49884658,49887475,49887717,49888230,49888423	49879504,49880402,49881475,49882152,49882400,49882892,49883076,49883745,49884369,49884559,49884758,49887573,49887834,49888317,49888748	0.750000
suprapubic_skin_female_adult_53_years	chr4	851139	851194	851139	-	High_confidence	7	8	24	1.338950	3.638148	chr4	851102	851393	SINE|Alu|AluJb	-	chr4	849275	851673	GAK|ENST00000502799.1	-	849275,849891	849774,851673	0.958333
suprapubic_skin_female_adult_53_years	chr6	169654701	169654713	169654701	-	RAMPAGE_only	6	6	10	0.557896	2.947703	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169457211	169649233	WDR27|ENST00000479310.5	-	169457211,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197	169457634,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649233	0.600000
suprapubic_skin_female_adult_53_years	chr1	179118710	179118720	179118710	-	RAMPAGE_only	2	2	7	0.390527	2.584963	chr1	179118593	179118709	LINE|RTE-BovB|MamRTE1	-	chr1	179107717	179143044	ABL2|ENST00000504405.5	-	179107717,179109207,179110281,179112308,179114877,179117331,179118586,179120189,179121594,179126376,179131310,179142932	179108898,179109441,179110455,179112398,179115030,179117516,179118764,179120274,179121867,179126672,179131481,179143044	0.714286
suprapubic_skin_female_adult_53_years	chr19	55069756	55069815	55069773	-	High_confidence	16	27	84	4.686326	4.702331	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55064039	55069892	RDH13|ENST00000587046.1	-	55064039,55069693	55064412,55069892	0.654762
suprapubic_skin_female_adult_53_years	chr1	219988589	219988618	219988589	-	RAMPAGE_only	2	2	9	0.502106	2.750000	chr1	219988297	219988546	LINE|L2|L2c	-	chr1	219983136	220046656	STRG.12682.2	-	219983136,219984205,219987141,219988589,219996982,220001137,220005247,220006105,220007201,220010945,220018448,220018994,220022346,220024263,220025131,220030385,220032386,220033501,220034913,220040184,220046342	219983398,219984257,219987404,219988823,219997342,220001255,220005360,220006313,220007338,220011056,220018508,220020221,220022518,220024456,220025258,220030480,220032526,220033658,220035013,220040269,220046656	0.888889
suprapubic_skin_female_adult_53_years	chr10	86974669	86974722	86974721	-	High_confidence	14	15	39	2.175794	4.753226	chr10	86974596	86974877	LINE|L1|L1M7	-	chr10	86965738	86974801	STRG.92171.10	-	86965738,86969041	86966237,86974801	1.000000
suprapubic_skin_female_adult_53_years	chr5	1598000	1598024	1598000	-	RAMPAGE_only	4	4	10	0.557896	2.646439	chr5	1597818	1597994	SINE|Alu|AluSc	-	chr5	1597556	1634005	LOC728613|NR_003713.1	-	1597556,1602690,1632844,1633807	1599827,1602735,1632906,1634005	0.900000
suprapubic_skin_female_adult_53_years	chr11	67186346	67186378	67186364	+	High_confidence	4	5	12	0.669475	3.277613	chr11	67185987	67186789	LINE|L1|L1M4c	+	chr11	67185521	67187202	STRG.99281.18	+	67185521	67187202	0.750000
suprapubic_skin_female_adult_53_years	chr5	176943338	176943366	176943338	-	RAMPAGE_only	2	3	12	0.669475	3.251629	chr5	176943235	176943320	DNA|hAT-Charlie|Charlie10	-	chr5	176905192	176966170	STRG.55842.5	-	176905192,176906010,176908522,176911310,176943334,176951473,176955958,176958092,176963179	176905492,176907177,176908694,176911389,176943488,176951577,176956035,176960578,176966170	1.000000
suprapubic_skin_female_adult_53_years	chr11	7697102	7697175	7697174	-	High_confidence	34	34	120	6.694752	5.878064	chr11	7697028	7697331	SINE|Alu|AluJo	-	chr11	7696504	7696965	OVCH2|ENST00000534817.1	-	7696504,7696708	7696589,7696965	0.750000
suprapubic_skin_female_adult_53_years	chr1	153967486	153967498	153967497	+	High_confidence	14	15	34	1.896846	4.207738	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.882353
suprapubic_skin_female_adult_53_years	chr6	169338298	169338324	169338323	-	RAMPAGE_only	3	3	9	0.502106	2.725481	chr6	169337543	169338318	LTR|ERV1|PABL_A-int	-	chr6	169330954	169340091	STRG.65554.1	-	169330954,169338120,169339914	169331015,169338384,169340091	0.666667
suprapubic_skin_female_adult_53_years	chr4	139647322	139647335	139647334	-	RAMPAGE_only	3	3	8	0.446317	2.750000	chr4	139647213	139647611	LINE|L2|L2b	+	chr4	139506035	139556774	SETD7|ENST00000274031.7	-	139506035,139517884,139520276,139523353,139529030,139533164,139546919,139556097	139511843,139518042,139520394,139523435,139529220,139533366,139547049,139556774	0.500000
suprapubic_skin_female_adult_53_years	chr1	19093534	19093573	19093572	-	High_confidence	3	4	10	0.557896	2.947703	chr1	19093526	19093673	LINE|L2|L2	+	chr1	19092732	19093440	UBR4|ENST00000492606.1	-	19092732,19093312	19092918,19093440	0.700000
suprapubic_skin_female_adult_53_years	chr7	140099256	140099261	140099256	-	RAMPAGE_only	3	3	9	0.502106	2.500000	chr7	140099193	140099494	SINE|Alu|AluJr4	-	chr7	140084745	140102491	STRG.72756.4	-	140084745,140091803,140094055,140096898,140097544,140098878,140099898,140101950	140091188,140092077,140096763,140097047,140097642,140099033,140100023,140102491	0.777778
suprapubic_skin_female_adult_53_years	chr12	133048566	133048567	133048566	+	High_confidence	8	8	12	0.669475	2.913977	chr12	133048350	133048601	SINE|MIR|MIR	-	chr12	133047620	133057332	ZNF84|ENST00000543124.1	+	133047620,133056953	133048848,133057332	0.583333
suprapubic_skin_female_adult_53_years	chr1	39966366	39966440	39966432	+	RAMPAGE_only	5	5	23	1.283161	4.175736	chr1	39966425	39966544	SINE|MIR|MIR1_Amn	-	chr1	39955157	39968614	STRG.3069.12	+	39955157,39957086,39965210,39965470,39965856,39968333	39955385,39958825,39965334,39965549,39967916,39968614	1.000000
suprapubic_skin_female_adult_53_years	chr1	211299509	211299510	211299509	+	RAMPAGE_only	7	7	9	0.502106	2.641604	chr1	211299438	211299600	LINE|CR1|L3	+	chr1	211301460	211314587	RCOR3|ENST00000486666.5	+	211301460,211312719,211313423	211304140,211312961,211314587	0.555556
suprapubic_skin_female_adult_53_years	chr15	99434596	99434613	99434596	-	High_confidence	5	6	16	0.892634	3.625000	chr15	99434339	99434607	LINE|L2|L2a	+	chr15	99420589	99435220	STRG.124551.2	-	99420589,99434895	99434593,99435220	1.000000
suprapubic_skin_female_adult_53_years	chr9	39810005	39810034	39810033	-	High_confidence	3	3	8	0.446317	2.807355	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.875000
suprapubic_skin_female_adult_53_years	chr11	62797448	62797449	62797448	-	High_confidence	11	11	17	0.948423	3.077820	chr11	62797417	62797731	SINE|Alu|AluJb	+	chr11	62792352	62797058	NXF1|ENST00000533048.5	-	62792352,62792640,62794257,62794934,62795900,62796065,62796286,62796459,62796941	62792514,62792701,62794440,62795007,62795943,62796181,62796345,62796567,62797058	0.705882
suprapubic_skin_female_adult_53_years	chr19	55064368	55064369	55064368	-	RAMPAGE_only	8	12	12	0.669475	3.418296	chr19	55064140	55064430	SINE|Alu|AluSc	+	chr19	55063751	55069491	RDH13|ENST00000590349.1	-	55063751,55064295,55069321	55063999,55064412,55069491	0.583333
suprapubic_skin_female_adult_53_years	chr10	46383293	46383298	46383297	+	RAMPAGE_only	7	8	20	1.115792	3.984184	chr10	46383092	46383297	SINE|MIR|MIRb	-	chr10	46375775	46391781	STRG.90320.3	+	46375775,46379884,46381145,46382578,46383455,46384205,46384773,46385379,46385711,46388392,46390870	46375872,46379975,46381240,46382692,46383546,46384285,46384833,46385473,46387644,46388515,46391781	0.500000
suprapubic_skin_female_adult_53_years	chr3	46674989	46675048	46674989	-	RAMPAGE_only	8	9	45	2.510532	4.747191	chr3	46674914	46675083	SINE|MIR|MIRc	-	chr3	46668996	46677455	ALS2CL|ENST00000486301.5	-	46668996,46671487,46671883,46672139,46673338,46674565,46676244,46676641,46677394	46671064,46671584,46672033,46672201,46673381,46675976,46676402,46677022,46677455	0.888889
suprapubic_skin_female_adult_53_years	chr4	1351579	1351605	1351604	+	RAMPAGE_only	12	12	21	1.171582	4.037401	chr4	1351373	1351688	SINE|Alu|AluYf1	-	chr4	1347705	1386244	UVSSA|ENST00000507531.5	+	1347705,1348089,1349523,1351714,1353029,1354734,1355116,1366319,1375363,1376033,1380046,1380879,1383765,1385867	1347887,1348189,1349854,1351835,1353413,1354847,1355245,1366431,1375508,1376168,1380230,1380988,1383940,1386244	0.857143
suprapubic_skin_female_adult_53_years	chr2	159228725	159228807	159228734	+	RAMPAGE_only	31	31	100	5.578960	5.402306	chr2	159228445	159228758	LINE|L2|L2	+	chr2	159224392	159232659	TANC1|ENST00000496406.1	+	159224392,159229577	159228896,159232659	0.970000
suprapubic_skin_female_adult_53_years	chr11	75771025	75771053	75771027	+	RAMPAGE_only	3	4	11	0.613686	2.921928	chr11	75771043	75771145	LINE|CR1|L3	+	chr11	75768732	75801536	DGAT2|NM_032564.4	+	75768732,75784617,75790187,75790660,75796327,75797157,75798226,75800353	75769112,75784746,75790295,75790731,75796532,75797332,75798429,75801536	0.545455
suprapubic_skin_female_adult_53_years	chr18	46087022	46087043	46087042	-	High_confidence	3	3	8	0.446317	2.521641	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.750000
suprapubic_skin_female_adult_53_years	chr18	9117532	9117557	9117556	+	High_confidence	3	4	9	0.502106	2.750000	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9117525	9119566	NDUFV2|ENST00000483511.1	+	9117525,9117837,9119325,9119473	9117638,9117903,9119388,9119566	0.888889
suprapubic_skin_female_adult_53_years	chr17	69314522	69314581	69314522	-	High_confidence	2	3	10	0.557896	3.121928	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	0.900000
suprapubic_skin_female_adult_53_years	chr3	46675100	46675101	46675100	-	RAMPAGE_only	4	4	6	0.334738	2.584963	chr3	46674914	46675083	SINE|MIR|MIRc	-	chr3	46668996	46677455	ALS2CL|ENST00000486301.5	-	46668996,46671487,46671883,46672139,46673338,46674565,46676244,46676641,46677394	46671064,46671584,46672033,46672201,46673381,46675976,46676402,46677022,46677455	1.000000
suprapubic_skin_female_adult_53_years	chr1	201373271	201373374	201373338	-	High_confidence	21	21	54	3.012638	5.148316	chr1	201373323	201373460	SINE|MIR|MIRb	+	chr1	201363328	201373315	TNNT2|ENST00000466570.5	-	201363328,201364297,201365190,201365609,201366837,201367770,201368161,201372026,201373118	201363406,201364375,201365307,201365670,201366871,201367803,201368227,201372155,201373315	0.851852
suprapubic_skin_female_adult_53_years	chr4	158681874	158681888	158681874	+	High_confidence	5	5	9	0.502106	2.500000	chr4	158680730	158681921	DNA|TcMar-Tigger|Tigger3b	+	chr4	158681941	158684775	ETFDH|ENST00000514148.1	+	158681941,158684591	158682424,158684775	0.888889
suprapubic_skin_female_adult_53_years	chr1	6471186	6471207	6471186	-	High_confidence	4	4	9	0.502106	3.169925	chr1	6471127	6471358	SINE|MIR|MIRb	-	chr1	6467121	6471583	PLEKHG5|ENST00000487949.4	-	6467121,6467824,6469041,6469334,6469543,6470235,6470505,6470734,6470989	6467572,6468586,6469241,6469450,6469676,6470355,6470643,6470884,6471583	0.888889
suprapubic_skin_female_adult_53_years	chr19	7638540	7638557	7638540	+	RAMPAGE_only	4	4	13	0.725265	2.661226	chr19	7638325	7638624	SINE|Alu|AluJr	+	chr19	7637104	7639464	STXBP2|ENST00000597467.1	+	7637104,7638725	7637186,7639464	0.769231
suprapubic_skin_female_adult_53_years	chr19	53075363	53075364	53075363	-	High_confidence	12	12	12	0.669475	3.584963	chr19	53075307	53076101	LTR|ERVL|MER21B	+	chr19	53066614	53075967	ZNF160|ENST00000601421.5	-	53066614,53074139,53075056	53070262,53074268,53075967	1.000000
suprapubic_skin_female_adult_53_years	chrX	149533789	149533810	149533795	-	High_confidence	3	3	8	0.446317	2.521641	chrX	149533761	149534222	LTR|ERVL|HERV16-int	+	chrX	149482542	149533935	AC244197.3|ENST00000422081.6	-	149482542,149486924,149490313,149496345,149498106,149500948,149529366,149529512,149532881	149483218,149487098,149490440,149496516,149498307,149501037,149529428,149529593,149533935	0.750000
suprapubic_skin_female_adult_53_years	chr4	119217569	119217599	119217569	+	RAMPAGE_only	2	2	7	0.390527	2.807355	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212742	119294746	STRG.44929.2	+	119212742,119214069,119217549,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119212873,119214222,119217673,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119294746	0.857143
suprapubic_skin_female_adult_53_years	chr16	2610673	2610694	2610680	+	RAMPAGE_only	5	5	10	0.557896	2.641604	chr16	2610448	2610737	SINE|Alu|AluSq2	-	chr16	2603383	2630494	LOC652276|NR_015441.1	+	2603383,2610461,2613959,2628824	2603727,2611052,2614068,2630494	0.900000
suprapubic_skin_female_adult_53_years	chr12	24368564	24368605	24368564	-	RAMPAGE_only	6	6	25	1.394740	4.349649	chr12	24368549	24368674	LINE|L2|L2b	+	chr12	23845998	24357430	SOX5|ENST00000536729.2	-	23845998,23895897,24213342,24277215,24357337	23846193,23896024,24213417,24277312,24357430	0.800000
suprapubic_skin_female_adult_53_years	chr19	50279959	50279971	50279959	+	RAMPAGE_only	3	4	10	0.557896	3.169925	chr19	50279653	50279970	LINE|L1|L1MB7	-	chr19	50268345	50310539	MYH14|ENST00000262269.12	+	50268345,50271408,50271848,50272559,50275990,50276756,50278082,50280036,50280230,50281593,50286481,50286536,50289435,50290886,50292260,50293232,50293563,50301660,50307048,50309004,50309639	50268367,50271546,50271972,50272731,50276203,50276901,50278289,50280141,50280383,50281842,50286535,50286694,50289648,50291048,50292389,50293321,50293687,50301869,50307157,50309177,50310539	0.600000
suprapubic_skin_female_adult_53_years	chr2	186422395	186422405	186422404	-	RAMPAGE_only	7	7	16	0.892634	3.640224	chr2	186422293	186422427	LTR|ERVL-MaLR|MLT1J2	-	chr2	186033530	186086317	LINC01473|NR_110218.1	-	186033530,186038330,186039499,186081329,186083153,186086300	186033802,186038435,186039555,186081416,186083221,186086317	0.500000
suprapubic_skin_female_adult_53_years	chr2	60920446	60920469	60920468	+	RAMPAGE_only	3	3	10	0.557896	2.725481	chr2	60920192	60920500	SINE|Alu|AluSx	-	chr2	60881655	60922984	REL|ENST00000394479.3	+	60881655,60891682,60894396,60900991,60916876,60918190,60918393,60920040,60920573,60921762	60881850,60891825,60894545,60901083,60917017,60918295,60918606,60920109,60920642,60922984	0.500000
suprapubic_skin_female_adult_53_years	chr8	27322373	27322439	27322373	+	High_confidence	3	3	17	0.948423	3.572469	chr8	27322321	27322488	SINE|MIR|MIRb	+	chr8	27322401	27459391	PTK2B|NM_004103.4	+	27322401,27325563,27397547,27419894,27420656,27422303,27430092,27430363,27430875,27431397,27432259,27433434,27434092,27434512,27435742,27436250,27437121,27437395,27437764,27439030,27439308,27440236,27442874,27444205,27445793,27450748,27451042,27451484,27453113,27454153,27454530,27458293	27322499,27325681,27397788,27420073,27420744,27422383,27430155,27430418,27431016,27431472,27432361,27433552,27434132,27434559,27435793,27436348,27437206,27437496,27437880,27439131,27439398,27440441,27442983,27444271,27445919,27450895,27451078,27451509,27453160,27454291,27454611,27459391	0.647059
suprapubic_skin_female_adult_53_years	chr7	2230687	2230713	2230687	-	High_confidence	2	2	8	0.446317	3.000000	chr7	2230469	2230994	DNA|MULE-MuDR|Ricksha_c	-	chr7	2219352	2230661	MAD1L1|ENST00000455998.5	-	2219352,2222574,2229983,2230548	2219456,2222754,2230143,2230661	0.750000
suprapubic_skin_female_adult_53_years	chr13	49496902	49496927	49496926	+	High_confidence	4	4	8	0.446317	2.750000	chr13	49496830	49497035	SINE|Alu|AluSp	-	chr13	49497055	49528992	PHF11|NM_001040444.2	+	49497055,49506634,49513058,49518017,49520893,49522042,49523174,49524084,49526386,49528510	49497217,49506756,49513166,49518151,49520940,49522107,49523241,49524216,49526458,49528992	1.000000
suprapubic_skin_female_adult_53_years	chr19	11251165	11251170	11251165	-	RAMPAGE_only	2	2	7	0.390527	2.521641	chr19	11251129	11251228	SINE|MIR|MIR1_Amn	-	chr19	11199294	11262452	DOCK6|ENST00000294618.11	-	11199294,11200307,11200715,11200908,11201888,11202393,11202583,11204080,11204199,11208685,11208910,11211775,11211992,11213175,11214274,11214552,11215386,11215800,11216913,11217230,11221850,11222108,11222734,11222992,11227336,11228939,11233202,11235597,11236345,11236792,11237455,11237640,11238044,11238186,11242044,11243058,11243257,11243556,11243801,11245562,11245811,11248065,11250873,11252118,11252481,11252782,11253638,11262396	11199539,11200469,11200822,11201052,11202125,11202483,11202709,11204095,11204331,11208829,11209103,11211876,11212151,11213328,11214409,11214649,11215471,11215927,11217096,11217391,11222020,11222248,11222905,11223106,11227477,11229035,11233366,11235759,11236577,11236879,11237557,11237779,11238115,11238304,11242207,11243152,11243385,11243710,11243882,11245712,11245878,11248151,11251086,11252248,11252550,11252958,11253726,11262452	0.571429
suprapubic_skin_female_adult_53_years	chr10	46554695	46554712	46554695	-	High_confidence	4	4	11	0.613686	2.732159	chr10	46554368	46554805	LTR|LTR|MamRep1527	+	chr10	46549043	46555530	GPRIN2|ENST00000374317.1	-	46549043,46554584,46555374	46550742,46554695,46555530	1.000000
suprapubic_skin_female_adult_53_years	chrX	152920361	152920369	152920368	+	High_confidence	13	13	24	1.338950	3.879664	chrX	152920417	152920551	SINE|MIR|MIR3	+	chrX	152920348	152973473	ZNF185|ENST00000426821.6	+	152920348,152920706,152922172,152931671,152932872,152938073,152945266,152959698,152963838,152965446,152967166,152969381,152970442,152971273	152920411,152920748,152922256,152931776,152932971,152938163,152945464,152959896,152963949,152965527,152967238,152969484,152970541,152973473	0.666667
suprapubic_skin_female_adult_53_years	chr11	70414290	70414299	70414290	+	RAMPAGE_only	2	2	8	0.446317	2.500000	chr11	70414063	70414356	SINE|Alu|AluY	+	chr11	70407352	70420253	CTTN|ENST00000415461.2	+	70407352,70407517,70409830,70414541,70415662,70417012,70419745	70407384,70407591,70409960,70414652,70415717,70417123,70420253	0.500000
suprapubic_skin_female_adult_53_years	chr10	34579965	34580008	34579965	-	RAMPAGE_only	17	17	74	4.128430	4.926539	chr10	34579924	34580214	SINE|Alu|AluSx	-	chr10	34574059	34605501	STRG.90019.1	-	34574059,34601682,34605043	34601619,34603063,34605501	0.972973
suprapubic_skin_female_adult_53_years	chr11	65967187	65967192	65967187	+	RAMPAGE_only	4	4	9	0.502106	2.500000	chr11	65966982	65967187	SINE|MIR|MIR	+	chr11	65961688	65979828	SART1|ENST00000312397.9	+	65961688,65964073,65964514,65965091,65965341,65965701,65965886,65966075,65966349,65967258,65967470,65967678,65976394,65976655,65977013,65977562,65977763,65978599,65978792,65979011	65962093,65964131,65964570,65965218,65965447,65965779,65965986,65966218,65966556,65967383,65967586,65967821,65976568,65976766,65977101,65977653,65977899,65978689,65978914,65979828	0.888889
suprapubic_skin_female_adult_53_years	chr5	32403108	32403116	32403108	-	RAMPAGE_only	4	4	9	0.502106	2.725481	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.888889
suprapubic_skin_female_adult_53_years	chr18	63486649	63486672	63486671	+	High_confidence	4	4	9	0.502106	2.725481	chr18	63486608	63486820	DNA|hAT-Charlie|MER20	+	chr18	63486676	63489463	SERPINB5|ENST00000588986.1	+	63486676,63489346	63487083,63489463	0.888889
suprapubic_skin_female_adult_53_years	chr8	124673383	124673384	124673383	-	High_confidence	5	7	7	0.390527	2.584963	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.714286
suprapubic_skin_female_adult_53_years	chr4	75127173	75127264	75127224	-	RAMPAGE_only	15	15	85	4.742116	5.529181	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.788235
suprapubic_skin_female_adult_53_years	chr12	16353884	16353885	16353884	+	High_confidence	9	9	11	0.613686	3.121928	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.636364
suprapubic_skin_female_adult_53_years	chr15	41997466	41997484	41997477	-	High_confidence	4	4	10	0.557896	2.947703	chr15	41997306	41997526	SINE|MIR|MIRb	+	chr15	41981583	41997522	PLA2G4E|ENST00000547930.5	-	41981583,41984435,41985838,41987171,41988048,41989414,41990120,41992736,41995359,41997123	41983974,41984619,41986005,41987375,41988156,41989552,41990235,41992959,41995496,41997522	0.900000
suprapubic_skin_female_adult_53_years	chr10	46382398	46382403	46382398	+	RAMPAGE_only	3	5	9	0.502106	2.725481	chr10	46382292	46382527	SINE|MIR|MIR	-	chr10	46375775	46391781	STRG.90320.3	+	46375775,46379884,46381145,46382578,46383455,46384205,46384773,46385379,46385711,46388392,46390870	46375872,46379975,46381240,46382692,46383546,46384285,46384833,46385473,46387644,46388515,46391781	0.555556
suprapubic_skin_female_adult_53_years	chr9	104786462	104786485	104786462	-	RAMPAGE_only	3	3	10	0.557896	2.921928	chr9	104786455	104786735	LINE|L1|L1ME4b	+	chr9	104781001	104810113	STRG.85675.4	-	104781001,104785395,104787919,104788425,104790921,104791935,104792785,104793170,104794386,104796052,104796308,104798420,104799818,104800509,104802053,104803283,104804625,104806240,104809465	104784455,104786976,104788054,104788567,104791028,104791998,104792906,104793300,104794510,104796197,104796424,104798598,104799988,104800584,104802159,104803316,104804720,104806430,104810113	1.000000
suprapubic_skin_female_adult_53_years	chr5	60737487	60737488	60737487	-	High_confidence	14	16	21	1.171582	3.787144	chr5	60737456	60737757	SINE|Alu|AluSx1	+	chr5	60735991	60737603	STRG.49519.1	-	60735991	60737603	0.904762
suprapubic_skin_female_adult_53_years	chr7	151375736	151375753	151375743	+	RAMPAGE_only	3	3	12	0.669475	3.418296	chr7	151375629	151375743	LINE|L2|L2c	+	chr7	151368829	151379249	STRG.73462.7	+	151368829,151374096,151375847,151376633,151377046,151378540	151368887,151374201,151375943,151376811,151378429,151379249	0.916667
suprapubic_skin_female_adult_53_years	chr19	51069500	51069542	51069541	-	High_confidence	27	27	120	6.694752	6.165092	chr19	51069174	51069685	LINE|L2|L2-1_AMi	+	chr19	51067880	51069514	STRG.141863.3	-	51067880	51069514	0.908333
suprapubic_skin_female_adult_53_years	chr20	40619804	40619814	40619809	-	High_confidence	3	3	11	0.613686	3.321928	chr20	40619322	40625356	LINE|L1|L1PA3	+	chr20	40597846	40619295	STRG.145126.1	-	40597846,40619158	40597938,40619295	0.545455
suprapubic_skin_female_adult_53_years	chr10	84205662	84205700	84205670	+	RAMPAGE_only	2	2	10	0.557896	2.947703	chr10	84205583	84205713	SINE|MIR|MIRb	+	chr10	84204552	84208862	CDHR1|ENST00000624091.1	+	84204552,84205731,84208173,84208728	84204605,84205927,84208377,84208862	0.700000
suprapubic_skin_female_adult_53_years	chr19	51023583	51023584	51023583	-	RAMPAGE_only	41	41	52	2.901059	4.858508	chr19	51023384	51023684	SINE|Alu|AluSx	-	chr19	51022689	51026616	KLK11|ENST00000594827.5	-	51022689,51023091,51024633,51025591,51026537	51022697,51024310,51024794,51025666,51026616	0.961538
suprapubic_skin_female_adult_53_years	chr22	17101901	17101923	17101922	+	RAMPAGE_only	4	4	12	0.669475	3.095795	chr22	17101933	17101968	LINE|Penelope|Penelope1_Vert	+	chr22	17084958	17115694	IL17RA|ENST00000612619.1	+	17084958,17097061,17097796,17098774,17100354,17101995,17102138,17103493,17104725,17105590,17107726,17108306	17085229,17097086,17097943,17098887,17100481,17102043,17102302,17103577,17104810,17105602,17107768,17115694	0.583333
suprapubic_skin_female_adult_53_years	chr2	97158244	97158297	97158244	+	RAMPAGE_only	2	2	17	0.948423	3.030639	chr2	97158212	97158524	SINE|Alu|AluSx	-	chr2	97113551	97162187	STRG.20515.3	+	97113551,97118063,97118343,97127066,97142639,97144517,97144639,97146485,97149294,97151878,97152503,97154674,97158106,97162098	97113936,97118178,97118517,97127134,97142668,97144546,97144712,97146516,97149361,97151939,97152534,97154741,97158655,97162187	0.764706
suprapubic_skin_female_adult_53_years	chrX	53099540	53099567	53099540	+	RAMPAGE_only	2	2	10	0.557896	2.947703	chrX	53099383	53100198	DNA|TcMar-Tigger|Tigger1	-	chrX	53094188	53143451	KANTR|ENST00000604849.1	+	53094188,53141847,53142598	53094284,53142094,53143451	0.800000
suprapubic_skin_female_adult_53_years	chr17	57998133	57998158	57998133	-	RAMPAGE_only	27	28	59	3.291586	4.903415	chr17	57997933	57998229	SINE|Alu|AluSx1	+	chr17	57989049	58007232	STRG.132939.2	-	57989049,57989648,57990881,58004922,58006342,58006943	57989269,57989796,58004001,58005973,58006527,58007232	1.000000
suprapubic_skin_female_adult_53_years	chr17	40476605	40477666	40476667	-	RAMPAGE_only	428	433	3920	218.695216	8.165073	chr17	40476583	40476881	SINE|Alu|AluSx	+	chr17	40475827	40480875	TNS4|ENST00000394072.7	-	40475827,40478306,40478579,40480699	40477729,40478333,40478648,40480875	0.965561
suprapubic_skin_female_adult_53_years	chr2	159428326	159428373	159428356	-	RAMPAGE_only	13	19	39	2.175794	4.701746	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.820513
suprapubic_skin_female_adult_53_years	chr3	33864067	33864079	33864078	+	RAMPAGE_only	3	4	8	0.446317	2.500000	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	1.000000
suprapubic_skin_female_adult_53_years	chr16	89687594	89687630	89687629	+	High_confidence	3	3	16	0.892634	3.640224	chr16	89687559	89687726	SINE|Alu|AluJb	-	chr16	89686727	89691512	CDK10|ENST00000514965.5	+	89686727,89687588,89689251,89690552,89691442	89686759,89687815,89689324,89690624,89691512	0.812500
suprapubic_skin_female_adult_53_years	chr1	65218896	65218921	65218920	+	RAMPAGE_only	3	3	7	0.390527	2.807355	chr1	65218928	65219138	LINE|L1|L1M5	+	chr1	65165931	65226429	AK4|ENST00000479060.1	+	65165931,65190709,65218753,65224751,65226062	65166019,65190829,65218926,65224870,65226429	1.000000
suprapubic_skin_female_adult_53_years	chr2	113625672	113625695	113625672	-	RAMPAGE_only	2	2	7	0.390527	2.807355	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	1.000000
suprapubic_skin_female_adult_53_years	chr9	127487606	127487622	127487606	+	RAMPAGE_only	2	3	10	0.557896	3.169925	chr9	127487587	127487657	LINE|L2|L2b	+	chr9	127479948	127501054	LRSAM1|ENST00000472068.1	+	127479948,127481182,127482949,127485735,127487675,127489443,127491214,127492801,127495963,127497252,127501009	127479978,127481227,127483020,127485840,127487763,127489518,127491295,127492897,127496095,127497334,127501054	0.600000
suprapubic_skin_female_adult_53_years	chr1	109669914	109669919	109669918	+	High_confidence	5	5	9	0.502106	2.725481	chr1	109669639	109670357	LTR|ERV1|LTR12_	-	chr1	109669546	109674864	GSTM2|ENST00000472225.6	+	109669546,109670174,109671286,109671472,109674746	109670063,109670234,109671382,109671583,109674864	0.555556
suprapubic_skin_female_adult_53_years	chr12	50718554	50718564	50718554	+	RAMPAGE_only	3	3	7	0.390527	2.807355	chr12	50718365	50718622	LINE|L2|L2a	+	chr12	50697589	50748667	STRG.105188.4	+	50697589,50704139,50706537,50708447,50714394,50718708,50718954,50721272,50723201,50724774,50727702,50728547,50732365,50734134,50735072,50737035,50739408,50741415,50744586	50699202,50704220,50706665,50708562,50714596,50718818,50719035,50721396,50723323,50724886,50727812,50731537,50732536,50734196,50735130,50737110,50739586,50741539,50748667	1.000000
suprapubic_skin_female_adult_53_years	chr11	112151764	112152452	112152000	-	RAMPAGE_only	22	22	579	32.302176	7.467731	chr11	112151537	112152480	LINE|L2|L2c	+	chr11	112143595	112164074	STRG.100985.4	-	112143595,112148602,112150071,112154974,112163905	112143817,112148736,112153603,112155061,112164074	1.000000
suprapubic_skin_female_adult_53_years	chr6	144533090	144533127	144533105	+	RAMPAGE_only	8	8	23	1.283161	4.004886	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144330819	144678552	STRG.64553.2	+	144330819,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405	144331018,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678552	0.869565
suprapubic_skin_female_adult_53_years	chr15	41837656	41837659	41837656	+	High_confidence	3	3	8	0.446317	2.521641	chr15	41837592	41837887	SINE|Alu|AluY	-	chr15	41837774	41848147	PLA2G4B|ENST00000452633.5	+	41837774,41838746,41840157,41840523,41840773,41841054,41841230,41841516,41841818,41842192,41842553,41843675,41844470,41844847,41845202,41845637,41845942,41846202,41846668,41847336,41847648	41837959,41838922,41840230,41840660,41840905,41841095,41841273,41841571,41841949,41842276,41842591,41843811,41844607,41845070,41845320,41845775,41846047,41846382,41846835,41847523,41848147	0.625000
suprapubic_skin_female_adult_53_years	chr12	123390725	123390774	123390744	+	High_confidence	11	11	49	2.733690	4.838567	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.857143
suprapubic_skin_female_adult_53_years	chr1	29174132	29174143	29174132	-	RAMPAGE_only	4	4	21	1.171582	3.725651	chr1	29173910	29174223	SINE|Alu|AluSx1	+	chr1	29159383	29181882	STRG.2116.4	-	29159383,29160374,29165889,29168502	29159486,29160517,29166866,29181882	0.952381
suprapubic_skin_female_adult_53_years	chr19	3062917	3062923	3062922	-	High_confidence	8	8	19	1.060002	3.932138	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	1.000000
suprapubic_skin_female_adult_53_years	chr6	38612999	38613020	38612999	-	RAMPAGE_only	3	3	8	0.446317	2.807355	chr6	38612953	38613271	DNA|hAT-Charlie|MER33	+	chr6	38594235	38639868	BTBD9|ENST00000498633.1	-	38594235,38597909,38612833,38639799	38594327,38598121,38613033,38639868	0.500000
suprapubic_skin_female_adult_53_years	chr10	133369992	133370017	133370016	-	RAMPAGE_only	3	4	9	0.502106	2.750000	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.777778
suprapubic_skin_female_adult_53_years	chr15	37984725	37984740	37984739	+	High_confidence	6	6	23	1.283161	3.969002	chr15	37984710	37984905	LTR|ERVL-MaLR|MLT1A0	+	chr15	37984932	37985317	STRG.119911.1	+	37984932	37985317	0.739130
suprapubic_skin_female_adult_53_years	chr11	125090446	125090447	125090446	+	RAMPAGE_only	22	22	26	1.450529	4.105389	chr11	125089312	125090854	LTR|ERV1|LTR12C	+	chr11	125079324	125090963	STRG.101699.4	+	125079324,125080613,125081420,125081753,125082243,125083814,125084824,125085065,125085394,125085576,125085953,125086203	125079760,125080780,125081458,125081906,125082334,125083877,125084873,125085139,125085473,125085674,125086018,125090963	0.846154
suprapubic_skin_female_adult_53_years	chr1	19344364	19344405	19344364	-	RAMPAGE_only	6	6	22	1.227371	4.061482	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.954545
suprapubic_skin_female_adult_53_years	chr12	109878996	109878999	109878998	+	RAMPAGE_only	60	89	111	6.192645	6.131886	chr12	109878962	109879076	SINE|MIR|MIRb	-	chr12	109900263	109905027	TCHP|ENST00000537218.1	+	109900263,109903026,109903936,109904736	109900426,109903214,109904147,109905027	0.702703
suprapubic_skin_female_adult_53_years	chr17	81686144	81686145	81686144	+	High_confidence	12	12	17	0.948423	3.149397	chr17	81685938	81686229	SINE|Alu|AluJb	-	chr17	81686266	81690830	HGS|ENST00000576087.1	+	81686266,81687002,81688703,81690181,81690673	81686387,81687095,81688827,81690234,81690830	0.647059
suprapubic_skin_female_adult_53_years	chr15	63328824	63328829	63328828	-	RAMPAGE_only	4	4	9	0.502106	3.000000	chr15	63328688	63329000	SINE|Alu|AluSz6	-	chr15	63324706	63381835	STRG.122155.6	-	63324706,63327148,63340287,63340719,63342001,63345476,63346529,63375657,63381635	63326357,63338945,63340445,63340783,63342097,63345619,63346709,63375678,63381835	0.888889
suprapubic_skin_female_adult_53_years	chr10	122241612	122241633	122241612	+	High_confidence	2	2	8	0.446317	2.750000	chr10	122241592	122241725	SINE|Alu|FLAM_A	-	chr10	122241633	122249128	TACC2|ENST00000503769.1	+	122241633,122248642,122249049	122242001,122248803,122249128	1.000000
suprapubic_skin_female_adult_53_years	chr15	82935315	82935337	82935315	-	RAMPAGE_only	3	3	13	0.725265	3.392747	chr15	82934248	82936442	LINE|L2|L2a	+	chr15	82848982	82952721	HOMER2|ENST00000450735.6	-	82848982,82851150,82852141,82854643,82859028,82864166,82875272,82892684,82952530	82849903,82851231,82852252,82854800,82859135,82864259,82875404,82892841,82952721	0.769231
suprapubic_skin_female_adult_53_years	chr12	118137951	118137963	118137962	+	RAMPAGE_only	4	4	8	0.446317	2.521641	chr12	118137693	118137986	SINE|Alu|AluSx1	-	chr12	118136067	118145109	STRG.108696.3	+	118136067,118139450,118144585	118138148,118139551,118145109	0.500000
suprapubic_skin_female_adult_53_years	chr4	2835723	2835758	2835723	+	RAMPAGE_only	4	5	20	1.115792	3.826875	chr4	2835616	2835925	SINE|Alu|AluSx1	-	chr4	2818813	2841098	SH3BP2|ENST00000356331.9	+	2818813,2820613,2822934,2824612,2825125,2827229,2827605,2829492,2831570,2831922,2832330,2832989,2833696	2819070,2820753,2823037,2824730,2825196,2827318,2827674,2830147,2831679,2831978,2832412,2833049,2841098	0.900000
suprapubic_skin_female_adult_53_years	chr2	127765210	127765246	127765210	-	RAMPAGE_only	5	5	32	1.785267	4.106949	chr2	127765110	127765160	LINE|CR1|L3	-	chr2	127701091	127811147	STRG.21916.2	-	127701091,127708676,127709489,127713582,127717154,127719264,127721835,127722590,127722957,127723252,127724332,127724886,127725060,127726650,127763061,127765173,127768188,127768932,127770777,127811011	127706552,127708892,127709856,127714021,127717263,127720353,127721988,127722730,127723044,127723347,127724443,127724965,127725215,127726777,127764979,127765269,127768293,127769001,127771004,127811147	0.968750
suprapubic_skin_female_adult_53_years	chr17	64764522	64764554	64764522	-	RAMPAGE_only	5	5	28	1.562109	4.253434	chr17	64764423	64764603	SINE|Alu|AluSx1	+	chr17	64761911	64762710	BPTFP1|ENST00000579209.1	-	64761911,64762354	64762047,64762710	1.000000
suprapubic_skin_female_adult_53_years	chr12	122513979	122513983	122513979	-	High_confidence	7	7	17	0.948423	3.852169	chr12	122513839	122514036	SINE|Alu|AluJo	+	chr12	122505329	122513917	RSRC2|ENST00000392442.6	-	122505329,122506833,122508217,122511108,122513766	122505706,122506923,122508447,122511188,122513917	0.882353
suprapubic_skin_female_adult_53_years	chr1	29166092	29166128	29166121	-	RAMPAGE_only	6	6	30	1.673688	4.323231	chr1	29165912	29166153	SINE|tRNA-RTE|MamSINE1	-	chr1	29154696	29160563	SRSF4|ENST00000497015.5	-	29154696,29159373,29160374	29154910,29159486,29160563	0.566667
suprapubic_skin_female_adult_53_years	chr10	47485342	47485364	47485342	-	RAMPAGE_only	2	2	8	0.446317	2.521641	chr10	47485196	47485329	LINE|L1|L1MC5a	-	chr10	47467992	47484158	ANXA8|NM_001040084.2	-	47467992,47471261,47472132,47473969,47474304,47474944,47475492,47476231,47477080,47478532,47479797,47483912	47468906,47471384,47472191,47474065,47474398,47475004,47475572,47476322,47477194,47478627,47479888,47484158	0.875000
suprapubic_skin_female_adult_53_years	chr19	17336684	17336727	17336685	+	High_confidence	18	25	51	2.845269	4.694498	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.901961
suprapubic_skin_female_adult_53_years	chr11	123061207	123061322	123061256	-	High_confidence	12	21	96	5.355801	5.073392	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.916667
suprapubic_skin_female_adult_53_years	chr7	23267751	23267779	23267751	+	RAMPAGE_only	3	3	10	0.557896	2.646439	chr7	23267446	23267814	LTR|ERVL-MaLR|MLT1A0	-	chr7	23266139	23270175	GPNMB|ENST00000479625.1	+	23266139,23267885,23269966	23266615,23267988,23270175	0.900000
suprapubic_skin_female_adult_53_years	chr1	23435727	23435746	23435727	-	High_confidence	2	2	8	0.446317	2.807355	chr1	23435510	23435729	SINE|MIR|MIRb	-	chr1	23428562	23436677	ASAP3|ENST00000495646.5	-	23428562,23431034,23431695,23433076,23433424,23433625,23434253,23434532,23435850,23436559	23429930,23431125,23431918,23433272,23433532,23433693,23434369,23434618,23436028,23436677	0.500000
suprapubic_skin_female_adult_53_years	chr20	3869435	3869517	3869462	+	RAMPAGE_only	3	3	36	2.008425	4.418201	chr20	3869168	3869472	SINE|Alu|AluY	-	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.861111
suprapubic_skin_female_adult_53_years	chr1	155378334	155378388	155378337	-	RAMPAGE_only	14	15	45	2.510532	4.878306	chr1	155378311	155378369	LINE|CR1|L3	+	chr1	155370146	155370868	ASH1L|ENST00000477427.1	-	155370146,155370776	155370650,155370868	0.822222
suprapubic_skin_female_adult_53_years	chr1	43120089	43120148	43120134	+	High_confidence	13	13	85	4.742116	5.847384	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43120120	43140408	STRG.3166.1	+	43120120,43135782,43137321	43120597,43135873,43140408	0.647059
suprapubic_skin_female_adult_53_years	chr1	52912330	52912372	52912371	-	High_confidence	5	5	13	0.725265	2.968919	chr1	52912201	52912503	SINE|Alu|AluJb	-	chr1	52911599	52912225	ECHDC2|ENST00000487040.1	-	52911599,52911722	52911653,52912225	0.923077
suprapubic_skin_female_adult_53_years	chr17	7139215	7139223	7139222	-	RAMPAGE_only	9	9	17	0.948423	3.690117	chr17	7139009	7139390	LTR|ERVL-MaLR|MLT1A	-	chr17	7107679	7115015	ASGR2|ENST00000450034.7	-	7107679,7108461,7108771,7114173,7114614,7114946	7107907,7108557,7108888,7114398,7114811,7115015	0.647059
suprapubic_skin_female_adult_53_years	chr5	77775469	77775524	77775482	-	High_confidence	4	4	22	1.227371	3.921928	chr5	77774856	77775573	LTR|ERV1|MER4A	+	chr5	77765105	77776287	STRG.50617.5	-	77765105,77766794	77766484,77776287	0.863636
suprapubic_skin_female_adult_53_years	chr11	64242522	64242549	64242548	+	High_confidence	8	11	24	1.338950	4.229871	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.958333
suprapubic_skin_female_adult_53_years	chr10	110885060	110885092	110885091	+	High_confidence	46	54	114	6.360014	5.679155	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110885252	110898122	PDCD4|ENST00000462577.5	+	110885252,110887664,110890599,110894090,110894411,110895947,110898027	110885366,110887814,110890670,110894198,110894522,110896087,110898122	0.631579
suprapubic_skin_female_adult_53_years	chr20	62289117	62289137	62289136	+	RAMPAGE_only	14	14	28	1.562109	4.593069	chr20	62288931	62289157	DNA|TcMar-Tigger|MER44C	+	chr20	62291561	62294114	OSBPL2|ENST00000471817.2	+	62291561,62293784	62291793,62294114	0.678571
suprapubic_skin_female_adult_53_years	chr1	155058772	155058785	155058784	+	High_confidence	9	9	15	0.836844	3.664498	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.533333
suprapubic_skin_female_adult_53_years	chr6	42887300	42887305	42887304	+	RAMPAGE_only	3	3	7	0.390527	2.584963	chr6	42887300	42887595	SINE|Alu|AluSp	+	chr6	42879681	42889925	RPL7L1|ENST00000304734.9	+	42879681,42880860,42883450,42884612,42885973,42886255,42887159	42879951,42880966,42883614,42884750,42886083,42886470,42889925	0.714286
suprapubic_skin_female_adult_53_years	chr12	52118139	52118183	52118182	-	High_confidence	7	7	42	2.343163	4.928049	chr12	52116006	52118404	LTR|ERV1|HERVE-int	-	chr12	52082042	52118193	STRG.105235.2	-	52082042,52104158,52108068,52116026	52082130,52106001,52108209,52118193	0.976190
suprapubic_skin_female_adult_53_years	chr4	94234072	94234105	94234072	+	RAMPAGE_only	2	2	11	0.613686	2.646439	chr4	94234038	94234182	SINE|MIR|MIR3	-	chr4	94208083	94289899	SMARCAD1|ENST00000394961.6	+	94208083,94208345,94213034,94226118,94233953,94236951,94240905,94249653,94250751,94252615,94264706,94270727,94273616,94274737,94274889,94276338,94277021,94278421,94278615,94278922,94280591,94281471,94283120,94284959,94289472	94208242,94208584,94213152,94226296,94234122,94237018,94241006,94249755,94250833,94253007,94264906,94270818,94273716,94274797,94274965,94276474,94277159,94278517,94278733,94279050,94280780,94281590,94283303,94285069,94289899	0.909091
suprapubic_skin_female_adult_53_years	chr5	176398212	176398245	176398244	-	RAMPAGE_only	4	4	14	0.781054	3.180833	chr5	176398188	176398259	LINE|L2|L2b	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.785714
suprapubic_skin_female_adult_53_years	chr5	34652520	34652523	34652522	-	High_confidence	4	6	8	0.446317	2.500000	chr5	34652238	34652537	DNA|hAT-Charlie|MER33	-	chr5	34651456	34651888	AC025754.2|ENST00000606491.1	-	34651456	34651888	0.875000
suprapubic_skin_female_adult_53_years	chr2	29114149	29114174	29114173	+	High_confidence	6	6	20	1.115792	4.142664	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.700000
suprapubic_skin_female_adult_53_years	chr12	123617863	123617864	123617863	+	High_confidence	7	7	9	0.502106	2.503258	chr12	123617854	123617910	LINE|RTE-X|L4_A_Mam	-	chr12	123618015	123620422	DDX55|ENST00000421670.3	+	123618015,123619431,123619963	123618837,123619724,123620422	1.000000
suprapubic_skin_female_adult_53_years	chr7	87040212	87040223	87040222	-	RAMPAGE_only	7	7	18	1.004213	4.169925	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.500000
suprapubic_skin_female_adult_53_years	chr11	72758550	72758576	72758550	-	High_confidence	2	2	8	0.446317	2.521641	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754862	72757939	STARD10|ENST00000543089.1	-	72754862,72755700,72757766	72755142,72755753,72757939	0.750000
suprapubic_skin_female_adult_53_years	chr2	218236449	218236511	218236487	+	RAMPAGE_only	4	7	19	1.060002	4.247928	chr2	218236511	218236805	SINE|Alu|AluSp	+	chr2	218235340	218254108	ARPC2|ENST00000477992.1	+	218235340,218238663,218239390,218245419,218249363,218249820,218253890	218236733,218238850,218239484,218245546,218249464,218249921,218254108	0.789474
suprapubic_skin_female_adult_53_years	chr22	23705502	23705531	23705502	-	RAMPAGE_only	8	8	24	1.338950	4.053509	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	1.000000
suprapubic_skin_female_adult_53_years	chr12	10702241	10702261	10702260	-	High_confidence	3	3	12	0.669475	2.913977	chr12	10702238	10702535	SINE|Alu|AluSz	+	chr12	10699316	10702475	YBX3|ENST00000540975.5	-	10699316,10701253,10701959,10702411	10699654,10701353,10702134,10702475	0.833333
suprapubic_skin_female_adult_53_years	chr2	109615032	109615033	109615032	+	High_confidence	16	17	18	1.004213	3.690117	chr2	109614998	109615140	LTR|ERV1|MER52D	+	chr2	109614333	109618987	SOWAHC|NM_023016.3	+	109614333	109618987	0.944444
suprapubic_skin_female_adult_53_years	chr3	185609175	185609187	185609186	+	High_confidence	3	3	7	0.390527	2.521641	chr3	185609111	185609190	DNA|hAT-Charlie|MER102b	-	chr3	185609002	185613374	SENP2|ENST00000459883.5	+	185609002,185611650,185612606,185613344	185609350,185611745,185612658,185613374	0.714286
suprapubic_skin_female_adult_53_years	chr4	76234500	76234536	76234535	-	High_confidence	7	11	35	1.952636	4.680758	chr4	76234334	76234657	LTR|ERV1|MER61A	-	chr4	76158759	76234536	SCARB2|ENST00000638295.1	-	76158759,76163224,76166249,76168402,76169866,76174143,76175790,76176436,76179516,76180953,76195706,76234302	76161751,76163383,76166301,76168476,76169985,76174313,76175910,76176528,76179705,76181101,76195864,76234536	0.742857
suprapubic_skin_female_adult_53_years	chr9	92720662	92720756	92720745	-	RAMPAGE_only	17	23	96	5.355801	5.398789	chr9	92720689	92720791	DNA|TcMar-Tigger|Tigger19b	-	chr9	92711362	92764801	BICD2|NM_001003800.1	-	92711362,92717796,92718538,92720299,92722655,92729023,92764504	92715463,92717948,92719582,92720755,92722808,92729236,92764801	0.979167
suprapubic_skin_female_adult_53_years	chr18	61652303	61652316	61652303	+	High_confidence	167	192	316	17.629512	6.721271	chr18	61652260	61652563	SINE|Alu|AluJr	-	chr18	61652292	61663739	STRG.137009.2	+	61652292,61662224	61652403,61663739	0.537975
suprapubic_skin_female_adult_53_years	chr16	14984545	14984567	14984545	+	RAMPAGE_only	4	4	14	0.781054	3.238901	chr16	14984495	14984791	SINE|Alu|AluSx3	-	chr16	14976762	15017387	PDXDC1|ENST00000567306.5	+	14976762,14997752,14998339,15001775,15004186,15006393,15009680,15016128,15017119,15017320	14976904,14997826,14998405,15001856,15004333,15006583,15009759,15016213,15017168,15017387	0.500000
suprapubic_skin_female_adult_53_years	chr15	99620903	99620915	99620908	+	RAMPAGE_only	5	5	12	0.669475	3.418296	chr15	99620843	99621144	SINE|Alu|AluSx1	-	chr15	99632977	99716488	MEF2A|NM_001130928.2	+	99632977,99671322,99674392,99675398,99690240,99706728,99710633,99712389	99633173,99671454,99674612,99675458,99690428,99706855,99710760,99716488	0.583333
suprapubic_skin_female_adult_53_years	chr9	72363564	72363576	72363564	-	RAMPAGE_only	4	4	15	0.836844	3.324863	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72360437	72364976	STRG.83803.11	-	72360437,72364695	72363606,72364976	0.933333
suprapubic_skin_female_adult_53_years	chr11	71745875	71745903	71745875	+	High_confidence	5	5	16	0.892634	3.506891	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.687500
suprapubic_skin_female_adult_53_years	chr7	6416300	6416323	6416308	-	High_confidence	4	4	10	0.557896	2.725481	chr7	6416262	6416563	SINE|Alu|AluSx1	+	chr7	6409599	6416711	STRG.66136.8	-	6409599,6410129,6412810,6412965,6416258	6410035,6410380,6412883,6413034,6416711	0.900000
suprapubic_skin_female_adult_53_years	chr17	15503190	15503200	15503190	-	RAMPAGE_only	6	6	10	0.557896	2.947703	chr17	15503120	15503414	SINE|Alu|AluJo	+	chr17	15502263	15563544	TVP23C|ENST00000225576.7	-	15502263,15545784,15547058,15553684,15555281,15563436	15503232,15545916,15547148,15553829,15555364,15563544	0.600000
suprapubic_skin_female_adult_53_years	chr7	64999443	64999444	64999443	-	RAMPAGE_only	23	23	27	1.506319	4.402674	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64990808	65006653	ERV3-1|ENST00000394323.2	-	64990808,65006540	64993414,65006653	0.851852
suprapubic_skin_female_adult_53_years	chr7	128622497	128622518	128622517	+	RAMPAGE_only	4	5	15	0.836844	3.373557	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.800000
suprapubic_skin_female_adult_53_years	chr2	23395308	23395341	23395324	+	RAMPAGE_only	2	2	8	0.446317	2.807355	chr2	23395363	23395464	DNA|hAT-Charlie|Charlie10	+	chr2	23390499	23402665	STRG.15946.1	+	23390499	23402665	0.875000
suprapubic_skin_female_adult_53_years	chr14	63873488	63873489	63873488	+	RAMPAGE_only	4	4	7	0.390527	2.807355	chr14	63873391	63873689	SINE|Alu|AluSc8	-	chr14	63864387	63874006	SYNE2|ENST00000556725.1	+	63864387,63873416	63864469,63874006	0.857143
suprapubic_skin_female_adult_53_years	chr17	40846970	40846978	40846970	+	RAMPAGE_only	2	2	8	0.446317	2.807355	chr17	40846907	40847068	LTR?|LTR?|MamRep605	+	chr17	40850797	40981856	STRG.131681.1	+	40850797,40918228,40921407,40928258,40975496,40980448	40850860,40918365,40921489,40928682,40975604,40981856	0.750000
suprapubic_skin_female_adult_53_years	chr15	41837836	41837871	41837853	+	RAMPAGE_only	7	8	27	1.506319	3.893661	chr15	41837592	41837887	SINE|Alu|AluY	-	chr15	41828115	41848143	JMJD7-PLA2G4B|ENST00000491746.5	+	41828115,41834739,41835587,41836147,41836474,41836780,41837067,41840523,41840773,41841054,41841230,41841516,41841818,41842192,41842553,41843125,41843675,41844470,41844847,41845202,41845942,41846668,41847336,41847648	41828188,41835223,41835644,41836243,41836551,41836940,41840230,41840660,41840905,41841095,41841273,41841571,41841949,41842276,41842591,41843223,41843811,41844607,41845070,41845775,41846382,41846835,41847523,41848143	0.925926
suprapubic_skin_female_adult_53_years	chr14	101731413	101731433	101731432	+	High_confidence	5	5	10	0.557896	3.121928	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.700000
suprapubic_skin_female_adult_53_years	chr11	46862823	46862902	46862901	-	High_confidence	4	4	28	1.562109	4.430632	chr11	46862823	46863368	LTR|ERVL-MaLR|MLT1F2	+	chr11	46856869	46862933	LRP4|ENST00000529604.1	-	46856869,46862605	46859315,46862933	0.928571
suprapubic_skin_female_adult_53_years	chr13	21374368	21374400	21374399	-	RAMPAGE_only	3	3	9	0.502106	2.725481	chr13	21374238	21374533	SINE|Alu|AluSx	-	chr13	21372576	21381455	ZDHHC20|ENST00000626464.2	-	21372576,21375106,21378660,21381433	21374270,21376655,21378738,21381455	1.000000
suprapubic_skin_female_adult_53_years	chr17	17686042	17686061	17686057	+	RAMPAGE_only	3	5	10	0.557896	3.169925	chr17	17685599	17686175	LINE|L2|L2b	+	chr17	17682494	17793143	RAI1|ENST00000471135.2	+	17682494,17683545,17724027,17792932	17682563,17683703,17724159,17793143	0.700000
suprapubic_skin_female_adult_53_years	chr13	32521749	32521784	32521764	-	High_confidence	2	2	10	0.557896	2.641604	chr13	32521693	32521992	SINE|Alu|AluSx1	+	chr13	32432830	32522275	N4BP2L2|ENST00000509076.1	-	32432830,32436360,32438651,32442387,32517856,32521372	32432972,32436405,32438737,32444124,32518003,32522275	0.900000
suprapubic_skin_female_adult_53_years	chr17	41653381	41653450	41653449	-	High_confidence	3	3	14	0.781054	3.807355	chr17	41653332	41653498	SINE|Alu|AluJr	+	chr17	41652630	41654406	STRG.131764.1	-	41652630	41654406	0.857143
suprapubic_skin_female_adult_53_years	chr9	125337291	125337330	125337297	+	RAMPAGE_only	6	6	28	1.562109	4.430632	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125331354	125363025	STRG.87198.9	+	125331354,125337017,125337220,125341176,125342218,125346818,125350294,125350712,125354653,125355643,125359419,125360527,125362605	125335252,125337095,125337591,125341264,125342299,125349519,125350404,125350872,125354841,125355857,125359492,125360725,125363025	0.892857
suprapubic_skin_female_adult_53_years	chr7	99358774	99358775	99358774	+	High_confidence	10	10	10	0.557896	3.121928	chr7	99358536	99358830	SINE|Alu|AluSp	-	chr7	99358665	99366214	ARPC1A|ENST00000463009.1	+	99358665,99359544,99363542,99365890	99358775,99359738,99363633,99366214	0.900000
suprapubic_skin_female_adult_53_years	chr13	114242770	114242918	114242917	+	RAMPAGE_only	10	12	100	5.578960	4.196197	chr13	114242779	114243005	DNA|hAT-Charlie|MER20	+	chr13	114236501	114262979	STRG.112975.9	+	114236501,114236798,114238989,114239349,114242120,114243855,114245999,114246930,114250548,114257077,114259334,114261886,114262878	114236699,114236896,114239028,114239490,114243348,114244969,114246049,114247004,114250674,114257230,114259398,114261948,114262979	0.940000
suprapubic_skin_female_adult_53_years	chr9	133104513	133104547	133104513	-	High_confidence	4	5	19	1.060002	3.836592	chr9	133104414	133104534	SINE|MIR|MIRc	+	chr9	133102517	133104602	RALGDS|ENST00000471109.1	-	133102517,133102778,133103229,133103746,133104262	133102571,133102900,133103262,133103833,133104602	0.789474
suprapubic_skin_female_adult_53_years	chr20	37509343	37509373	37509372	-	RAMPAGE_only	2	2	6	0.334738	2.584963	chr20	37509297	37509419	SINE|MIR|MIR3	-	chr20	37502413	37527862	BLCAP|ENST00000467603.1	-	37502413,37509103,37519231,37527792	37502554,37509212,37519350,37527862	0.500000
suprapubic_skin_female_adult_53_years	chr11	2979277	2979332	2979331	-	RAMPAGE_only	3	3	13	0.725265	3.180833	chr11	2979304	2979484	LINE|L1|L1ME2	+	chr11	2971449	2989268	NAP1L4|ENST00000530064.5	-	2971449,2972101,2976023,2978283,2979206,2983745,2989128	2971534,2972243,2976123,2978342,2979237,2983813,2989268	0.615385
suprapubic_skin_female_adult_53_years	chr3	24019004	24019044	24019043	+	High_confidence	13	14	34	1.896846	4.852169	chr3	24018754	24020004	LTR|ERV1|LTR2752	-	chr3	24018910	24088975	STRG.30469.1	+	24018910,24087924	24019269,24088975	0.529412
suprapubic_skin_female_adult_53_years	chr17	28695216	28695227	28695216	+	High_confidence	5	5	10	0.557896	2.947703	chr17	28695199	28695350	SINE|MIR|MIR3	+	chr17	28695009	28696883	SUPT6H|ENST00000580471.1	+	28695009,28696843	28695547,28696883	0.700000
suprapubic_skin_female_adult_53_years	chr17	80288857	80288881	80288857	+	High_confidence	5	5	10	0.557896	3.121928	chr17	80288813	80288929	LINE|L2|L2c	-	chr17	80288576	80299253	STRG.134161.12	+	80288576,80289658,80290569,80291627,80294120,80298320	80288755,80289837,80290728,80291827,80295813,80299253	0.800000
suprapubic_skin_female_adult_53_years	chr6	31463907	31463940	31463907	+	High_confidence	2	2	12	0.669475	2.584963	chr6	31463715	31464933	LTR|ERVL|ERV3-16A3_I-int	-	chr6	31463181	31465704	HCP5|ENST00000541196.2	+	31463181,31463370	31463279,31465704	0.916667
suprapubic_skin_female_adult_53_years	chr19	49086416	49086547	49086546	+	High_confidence	51	52	264	14.728453	5.969943	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.924242
suprapubic_skin_female_adult_53_years	chr3	196060546	196060594	196060593	-	High_confidence	5	5	21	1.171582	3.784184	chr3	196060516	196060826	SINE|Alu|AluY	+	chr3	196055110	196060604	TFRC|ENST00000483983.5	-	196055110,196058283,196058573,196060179	196055301,196058365,196058632,196060604	0.952381
suprapubic_skin_female_adult_53_years	chr7	66890325	66890363	66890325	+	RAMPAGE_only	2	2	8	0.446317	2.750000	chr7	66890322	66890467	DNA|hAT-Charlie|Charlie29a	+	chr7	66881285	66899511	STRG.68705.3	+	66881285,66884252,66885058,66886351,66890250,66893386,66893916,66896554,66899079	66882967,66884401,66885246,66886455,66890411,66893451,66894018,66898294,66899511	0.875000
suprapubic_skin_female_adult_53_years	chr9	127531659	127531756	127531680	-	RAMPAGE_only	4	4	26	1.450529	4.243856	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.576923
suprapubic_skin_female_adult_53_years	chr13	18990779	18990817	18990801	-	High_confidence	5	5	15	0.836844	3.521641	chr13	18990528	18990902	LTR|ERVL|MLT2C1	-	chr13	18943116	18991124	STRG.109410.2	-	18943116,18946716,18951669,18952520,18952714,18954927,18955536,18958025,18962126,18963948,18965187,18980130,18983353,18989896,18990568	18945245,18946994,18951829,18952591,18952893,18955043,18955656,18958417,18962274,18964136,18965366,18980283,18983421,18989994,18991124	0.933333
suprapubic_skin_female_adult_53_years	chr17	15503382	15503383	15503382	-	RAMPAGE_only	16	18	19	1.060002	3.725481	chr17	15503120	15503414	SINE|Alu|AluJo	+	chr17	15435885	15563536	STRG.130364.1	-	15435885,15440207,15503097,15545784,15547058,15553684,15555281,15563436	15438200,15440285,15540561,15545916,15547148,15553829,15555364,15563536	0.631579
suprapubic_skin_female_adult_53_years	chr18	263657	263751	263750	-	RAMPAGE_only	21	24	83	4.630536	5.319031	chr18	263424	263801	LINE|L2|L2a	+	chr18	214521	268019	STRG.134325.3	-	214521,215428,216485,218885,223439,224083,224923,225088,226800,246323,247848,252538,254272,259179,259681,260185,265302,265456,267965	214921,215504,216633,218969,223505,224179,224994,225403,226901,246455,247957,252612,254355,259275,259730,264092,265363,265530,268019	1.000000
suprapubic_skin_female_adult_53_years	chr14	81170402	81170420	81170412	-	High_confidence	7	11	24	1.338950	4.186704	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.875000
suprapubic_skin_female_adult_53_years	chr7	108127606	108127698	108127679	-	RAMPAGE_only	4	8	37	2.064215	3.940351	chr7	108127597	108127747	DNA|hAT-Charlie|MER5A	+	chr7	108062469	108130355	STRG.71473.23	-	108062469,108063760,108065761,108066368,108068015,108069707,108076943,108078200,108091625,108092336,108095227,108098402,108103043,108104498,108105816,108106508,108107630,108109170,108116003,108123130,108123838	108062994,108063985,108065919,108066600,108068159,108069885,108077064,108079786,108091776,108092416,108095337,108098582,108103232,108104619,108106031,108106572,108107819,108111946,108116161,108123194,108130355	0.972973
suprapubic_skin_female_adult_53_years	chr11	58578066	58578113	58578102	-	High_confidence	6	7	37	2.064215	4.493150	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58550393	58578135	STRG.97668.3	-	58550393,58554840,58564154,58570555,58577985	58551232,58554940,58564201,58570713,58578135	0.594595
suprapubic_skin_female_adult_53_years	chr8	56559496	56559497	56559496	-	High_confidence	18	18	20	1.115792	4.247928	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.500000
suprapubic_skin_female_adult_53_years	chr9	2072964	2072977	2072964	+	High_confidence	9	9	21	1.171582	4.021928	chr9	2072786	2073156	LTR|ERVL-MaLR|MLT1N2	-	chr9	2073096	2081860	SMARCA2|ENST00000635129.1	+	2073096,2073565,2076228,2077628,2081831	2073342,2073623,2076329,2077776,2081860	0.809524
suprapubic_skin_female_adult_53_years	chr12	547795	547801	547795	+	High_confidence	3	3	8	0.446317	2.807355	chr12	547713	547900	SINE|MIR|MIR	-	chr12	547638	563478	B4GALNT3|ENST00000647602.1	+	547638,548230,549768,550921,552062,552466,556546,557607,557890,558507,559294,561342	548102,548297,549912,551031,552163,553983,556866,557761,558088,558661,559421,563478	0.750000
suprapubic_skin_female_adult_53_years	chr7	55202365	55202384	55202383	+	RAMPAGE_only	5	6	9	0.502106	2.750000	chr7	55202334	55202483	DNA|hAT-Charlie|MER5A1	+	chr7	55019020	55203076	EGFR|ENST00000455089.5	+	55019020,55142285,55143304,55151293,55152545,55154010,55155829,55156532,55156758,55157662,55160138,55161498,55163732,55165279,55171174,55172982,55173920,55174721,55181292,55191718,55192765,55198716,55200315,55201187,55201734,55202516	55019365,55142437,55143488,55151362,55152664,55154152,55155946,55156659,55156832,55157753,55160338,55161631,55163823,55165437,55171213,55173124,55174043,55174820,55181478,55191874,55192841,55198863,55200413,55201355,55201782,55203076	0.555556
suprapubic_skin_female_adult_53_years	chr9	131454989	131455004	131454989	+	RAMPAGE_only	7	10	27	1.506319	4.315824	chr9	131454923	131455021	SINE|Alu|AluSx3	-	chr9	131430089	131500171	PRRC2B|ENST00000357304.8	+	131430089,131432616,131436619,131438988,131444184,131446400,131447084,131447661,131455075,131459163,131464762,131467562,131470787,131473507,131474453,131477743,131478473,131479251,131481725,131482370,131482709,131483358,131484685,131484947,131486084,131487166,131487855,131491424,131492168,131494404,131495739	131430259,131432794,131436722,131439061,131444328,131446642,131447206,131447804,131455166,131459356,131465078,131467753,131470983,131473724,131476535,131477949,131478619,131479393,131481808,131482562,131482907,131483445,131484790,131485140,131486182,131487294,131488096,131491580,131492260,131494486,131500171	0.814815
suprapubic_skin_female_adult_53_years	chr11	117223649	117223664	117223649	-	RAMPAGE_only	29	29	51	2.845269	4.236633	chr11	117223598	117223805	LINE|L2|L2b	-	chr11	117205073	117226876	PCSK7|ENST00000534529.5	-	117205073,117206680,117207066,117207653,117207969,117208896,117218465,117219056,117219590,117223207,117224700	117206356,117206798,117207160,117207735,117208064,117209053,117218568,117219164,117219758,117224216,117226876	0.941176
suprapubic_skin_female_adult_53_years	chr9	128115123	128115124	128115123	-	RAMPAGE_only	5	5	7	0.390527	2.521641	chr9	128115112	128115246	SINE|MIR|MIRb	+	chr9	128108651	128118540	STRG.87354.1	-	128108651,128113372,128115073,128117709,128117922	128111799,128114686,128115289,128117835,128118540	1.000000
suprapubic_skin_female_adult_53_years	chr3	48924764	48924767	48924764	+	High_confidence	4	4	9	0.502106	2.750000	chr3	48924715	48924993	SINE|Alu|AluSc8	-	chr3	48924715	48945181	ARIH2|ENST00000463204.5	+	48924715,48927461,48945135	48924839,48927813,48945181	0.555556
suprapubic_skin_female_adult_53_years	chr20	18794077	18794086	18794085	+	High_confidence	23	23	65	3.626324	4.380723	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.969231
suprapubic_skin_female_adult_53_years	chr3	9818583	9818606	9818583	+	High_confidence	16	16	37	2.064215	4.777021	chr3	9818371	9818667	SINE|Alu|AluY	-	chr3	9818560	9835404	TTLL3|ENST00000473661.5	+	9818560,9825799,9826996,9827214,9828959,9833103,9834426,9834680	9820741,9825948,9827072,9827240,9829395,9833245,9834503,9835404	1.000000
suprapubic_skin_female_adult_53_years	chr14	49789498	49789508	49789498	-	RAMPAGE_only	4	5	12	0.669475	3.418296	chr14	49789398	49789451	LINE|L2|L2a	-	chr14	49784904	49787174	NEMF|ENST00000554275.1	-	49784904,49786717	49785320,49787174	0.500000
suprapubic_skin_female_adult_53_years	chr17	69196699	69196733	69196718	-	RAMPAGE_only	2	2	8	0.446317	2.521641	chr17	69195559	69197005	Retroposon|SVA|SVA_B	-	chr17	69148591	69225442	ABCA10|ENST00000518929.5	-	69148591,69149032,69149983,69152042,69152361,69153304,69154234,69155018,69155804,69156831,69164073,69164963,69174280,69174606,69175405,69182152,69182674,69185476,69187680,69190357,69191175,69192562,69193109,69193492,69193813,69194384,69196245,69197063,69214703,69215814,69216216,69219544,69221791,69222532,69225324	69148925,69149088,69150063,69152183,69152481,69154009,69154326,69155136,69155925,69156923,69164154,69165083,69174394,69174777,69175513,69182290,69182808,69185643,69187879,69190477,69191315,69192653,69193248,69193612,69193989,69194495,69196483,69197122,69214851,69216000,69216358,69219771,69221895,69222697,69225442	0.500000
suprapubic_skin_female_adult_53_years	chr1	224311970	224311971	224311970	-	High_confidence	9	9	11	0.613686	3.121928	chr1	224311954	224312176	SINE|MIR|MIR	+	chr1	224308007	224312124	NVL|ENST00000498767.1	-	224308007,224311799	224308263,224312124	0.636364
suprapubic_skin_female_adult_53_years	chr7	44082293	44082300	44082293	-	High_confidence	3	4	8	0.446317	2.750000	chr7	44082075	44082246	SINE|MIR|MIRc	-	chr7	44072246	44082464	POLM|ENST00000335195.10	-	44072246,44073624,44073782,44074397,44076508,44078739,44079570,44079860,44080732,44082250	44073377,44073708,44074025,44074522,44076629,44078811,44079741,44079959,44080916,44082464	0.875000
suprapubic_skin_female_adult_53_years	chr1	20895621	20895622	20895621	-	RAMPAGE_only	13	14	14	0.781054	3.546594	chr1	20895547	20896174	DNA|TcMar-Tigger|Tigger3b	+	chr1	20806469	21050994	EIF4G3|ENST00000264211.12	-	20806469,20810737,20813157,20817391,20825099,20827616,20829146,20840855,20849414,20851257,20853559,20854977,20857402,20860384,20862227,20864475,20865115,20879322,20886200,20893516,20895367,20899696,20904882,20941490,20950002,20969473,20973001,20980333,20981047,21002712,21050865	20807500,20810884,20813239,20817538,20825198,20827698,20829272,20841028,20849530,20851478,20853677,20855071,20857497,20860517,20862332,20864712,20865262,20879520,20886371,20893636,20895501,20899943,20904971,20942330,20950111,20969596,20973099,20980448,20981227,21002808,21050994	0.785714
suprapubic_skin_female_adult_53_years	chr5	148094158	148094190	148094177	+	RAMPAGE_only	4	5	22	1.227371	3.970573	chr5	148094012	148094305	SINE|Alu|AluJo	+	chr5	148090927	148101428	SPINK5|ENST00000476608.1	+	148090927,148091164,148094353,148095817,148097866,148099233,148100453,148101354	148091045,148091228,148094481,148095905,148097994,148099315,148100581,148101428	0.818182
suprapubic_skin_female_adult_53_years	chr15	34588448	34588449	34588448	-	RAMPAGE_only	5	5	8	0.446317	2.521641	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34406676	34583634	STRG.119368.14	-	34406676,34407523,34437397,34583543	34406870,34407735,34437442,34583634	0.500000
suprapubic_skin_female_adult_53_years	chr9	123179187	123179217	123179216	-	RAMPAGE_only	4	4	12	0.669475	3.584963	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.916667
suprapubic_skin_female_adult_53_years	chr10	122306547	122306572	122306562	+	RAMPAGE_only	2	2	8	0.446317	2.807355	chr10	122306534	122306621	SINE|MIR|MIR3	+	chr10	122303570	122338302	STRG.94130.2	+	122303570,122329479,122331175,122334880,122336493,122338016	122307308,122329571,122332513,122334979,122336682,122338302	0.875000
suprapubic_skin_female_adult_53_years	chr6	31587009	31587010	31587009	+	High_confidence	6	7	8	0.446317	2.807355	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.750000
suprapubic_skin_female_adult_53_years	chr3	53640802	53640822	53640821	+	RAMPAGE_only	6	7	11	0.613686	2.845351	chr3	53640733	53640899	DNA|hAT-Charlie|MER117	+	chr3	53501636	53662495	STRG.32423.1	+	53501636,53650778,53660132	53501720,53650918,53662495	0.545455
suprapubic_skin_female_adult_53_years	chr10	121974531	121974540	121974536	-	High_confidence	4	4	9	0.502106	2.500000	chr10	121974357	121974506	DNA|hAT-Charlie|MER5A	-	chr10	121959364	121974285	NSMCE4A|ENST00000468209.5	-	121959364,121959500,121960357,121961422,121963237,121965285,121967654,121970938,121974003	121959410,121959595,121960406,121961517,121963328,121965385,121967806,121971069,121974285	0.666667
suprapubic_skin_female_adult_53_years	chr12	1371754	1371755	1371754	+	RAMPAGE_only	11	11	13	0.725265	3.180833	chr12	1371731	1371803	SINE|MIR|MIR	+	chr12	1408191	1445055	ERC1|ENST00000539802.2	+	1408191,1444561	1408247,1445055	0.769231
suprapubic_skin_female_adult_53_years	chr7	150323750	150323751	150323750	-	High_confidence	7	8	10	0.557896	3.121928	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	1.000000
suprapubic_skin_female_adult_53_years	chr8	102285735	102285755	102285754	-	RAMPAGE_only	6	6	11	0.613686	3.027169	chr8	102285712	102285783	DNA|hAT-Ac|OldhAT1	-	chr8	102252272	102412689	UBR5|NM_001282873.1	-	102252272,102257631,102258984,102261145,102261914,102264473,102265099,102266946,102268977,102270038,102271133,102272528,102275520,102275707,102276971,102278825,102279035,102280393,102281288,102285126,102285512,102286359,102287432,102288154,102289452,102293604,102293954,102294981,102295203,102295413,102295635,102296892,102297457,102298391,102298847,102299451,102299999,102304042,102305084,102311298,102311734,102312133,102312341,102313803,102314743,102323310,102326545,102327741,102329089,102329282,102342472,102345395,102346235,102346902,102360070,102360588,102361124,102361581,102412172	102254514,102257717,102259129,102261259,102262070,102264558,102265275,102267007,102269108,102270183,102271245,102272772,102275619,102275828,102277192,102278939,102279208,102280467,102281519,102285338,102285781,102286617,102287564,102288266,102289576,102293844,102294115,102295111,102295330,102295532,102295782,102296984,102297606,102298489,102298971,102299547,102300151,102304169,102305295,102311496,102311889,102312245,102312485,102313916,102314853,102323495,102326663,102327896,102329200,102329399,102342684,102345545,102346395,102347092,102360190,102360665,102361206,102361626,102412689	1.000000
suprapubic_skin_female_adult_53_years	chrX	19647762	19647785	19647784	-	RAMPAGE_only	36	43	100	5.578960	5.619122	chrX	19647773	19647939	DNA|hAT-Charlie|MER5A	+	chrX	19592067	19664715	SH3KBP1|ENST00000477102.1	-	19592067,19594948,19601499,19607937,19631863,19645399,19664688	19592147,19595000,19601650,19608045,19631958,19645475,19664715	0.700000
suprapubic_skin_female_adult_53_years	chr17	40918317	40918318	40918317	+	High_confidence	12	14	18	1.004213	3.292770	chr17	40918206	40918503	SINE|Alu|AluJr	-	chr17	40918127	40939236	STRG.131681.4	+	40918127,40921407,40928258	40918481,40921489,40939236	0.944444
suprapubic_skin_female_adult_53_years	chr16	11895195	11895205	11895195	-	High_confidence	3	3	8	0.446317	3.000000	chr16	11895148	11895448	SINE|Alu|AluSq2	+	chr16	11890792	11895284	GSPT1|ENST00000567631.1	-	11890792,11894953	11891139,11895284	0.750000
suprapubic_skin_female_adult_53_years	chr6	52987490	52987521	52987496	-	RAMPAGE_only	7	7	32	1.785267	4.875000	chr6	52987421	52987928	LINE|L1|L1MA4	+	chr6	52977952	52995304	STRG.59711.4	-	52977952,52982573,52984463,52987356,52994156,52995248	52978592,52982705,52985583,52987408,52994261,52995304	0.562500
suprapubic_skin_female_adult_53_years	chr8	144106344	144106394	144106357	+	High_confidence	3	3	15	0.836844	3.521641	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.866667
suprapubic_skin_female_adult_53_years	chr12	57103049	57103058	57103049	-	High_confidence	13	13	23	1.283161	3.236186	chr12	57102943	57103162	SINE|Alu|AluJo	-	chr12	57099418	57102990	STAT6|ENST00000555375.5	-	57099418,57099766,57099995,57102289,57102828	57099440,57099903,57100090,57102496,57102990	0.826087
suprapubic_skin_female_adult_53_years	chr10	25813036	25813057	25813036	+	RAMPAGE_only	4	4	15	0.836844	3.773557	chr10	25812863	25813152	SINE|Alu|AluJo	-	chr10	25808647	25912616	STRG.89320.1	+	25808647,25813038,25852532,25890180,25901269,25907157	25808690,25813223,25852690,25890309,25906206,25912616	0.600000
suprapubic_skin_female_adult_53_years	chr2	159217412	159217413	159217412	+	RAMPAGE_only	16	16	21	1.171582	3.471354	chr2	159216979	159217432	LTR|ERVL-MaLR|MLT1G1	-	chr2	159199017	159232655	TANC1|ENST00000470074.1	+	159199017,159217496,159219237,159224231,159225687,159227818,159228795,159229577	159199053,159217630,159219867,159224364,159225779,159227965,159228896,159232655	0.619048
suprapubic_skin_female_adult_53_years	chr15	80059908	80059919	80059918	+	High_confidence	14	14	23	1.283161	4.277613	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.956522
suprapubic_skin_female_adult_53_years	chr4	152645033	152645133	152645132	-	RAMPAGE_only	6	6	43	2.398953	4.765731	chr4	152644906	152645271	LINE|L2|L2a	+	chr4	152622748	152680012	STRG.46130.3	-	152622748,152640927,152643087,152644414,152652537,152652666,152679869	152628561,152640985,152643173,152646992,152652576,152652927,152680012	0.953488
suprapubic_skin_female_adult_53_years	chr1	161206418	161206445	161206418	+	High_confidence	4	4	9	0.502106	2.503258	chr1	161206361	161206444	SINE|tRNA|LFSINE_Vert	+	chr1	161206408	161209727	NDUFS2|ENST00000473321.1	+	161206408,161209192,161209482	161206597,161209313,161209727	1.000000
suprapubic_skin_female_adult_53_years	chr3	45004909	45004942	45004941	+	High_confidence	2	2	9	0.502106	2.725481	chr3	45004554	45005133	LINE|L1|L1ME3A	-	chr3	45004159	45011470	EXOSC7|ENST00000486727.1	+	45004159,45007419,45011234	45005414,45007575,45011470	0.888889
suprapubic_skin_female_adult_53_years	chr4	16247524	16247538	16247537	+	RAMPAGE_only	3	3	6	0.334738	2.584963	chr4	16247331	16247692	LTR|ERVL|LTR16A1	-	chr4	16244886	16248221	STRG.40840.1	+	16244886	16248221	0.833333
suprapubic_skin_female_adult_53_years	chr15	42147837	42147846	42147837	-	High_confidence	23	24	39	2.175794	4.631305	chr15	42147814	42147909	SINE|MIR|MIR	-	chr15	42141208	42147733	STRG.120304.10	-	42141208,42142527,42143977,42144449,42145574,42145765,42147625	42142204,42142714,42144144,42144644,42145682,42147346,42147733	0.974359
suprapubic_skin_female_adult_53_years	chr3	33838246	33838279	33838246	+	RAMPAGE_only	6	6	31	1.729477	4.615061	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.709677
suprapubic_skin_female_adult_53_years	chr6	53474676	53474695	53474676	+	RAMPAGE_only	4	4	10	0.557896	2.947703	chr6	53469147	53474826	LINE|L1|L1MA3	-	chr6	53503184	53506919	AL033397.2|ENST00000508884.1	+	53503184,53506153,53506797	53503328,53506434,53506919	0.800000
suprapubic_skin_female_adult_53_years	chr5	60779277	60779278	60779277	-	High_confidence	6	6	7	0.390527	2.584963	chr5	60778708	60780114	LTR|ERVL-MaLR|THE1D-int	-	chr5	60777618	60779571	STRG.49524.1	-	60777618	60779571	0.714286
suprapubic_skin_female_adult_53_years	chr4	2935478	2935491	2935490	+	High_confidence	3	3	7	0.390527	2.521641	chr4	2935271	2935512	LTR|ERVL|MLT2F	-	chr4	2935545	2942051	NOP14-AS1|ENST00000512712.2	+	2935545,2937751,2940301	2936890,2937844,2942051	1.000000
suprapubic_skin_female_adult_53_years	chr15	81309395	81309416	81309415	-	RAMPAGE_only	3	4	7	0.390527	2.807355	chr15	81309157	81309594	LTR|ERVL-MaLR|MLT1G1	-	chr15	81309052	81324125	STARD5|ENST00000302824.6	-	81309052,81318408,81319338,81322407,81322898,81324000	81313403,81318502,81319456,81322540,81322948,81324125	0.857143
suprapubic_skin_female_adult_53_years	chr7	64949168	64949178	64949168	+	High_confidence	2	2	6	0.334738	2.584963	chr7	64948006	64950297	LTR|ERVK|HERVK9-int	+	chr7	64948469	64949382	STRG.68441.1	+	64948469	64949382	0.666667
suprapubic_skin_female_adult_53_years	chr7	100351400	100351493	100351492	+	RAMPAGE_only	4	5	24	1.338950	4.136842	chr7	100351420	100351962	LINE|L2|L2	-	chr7	100336242	100351900	STRG.70815.16	+	100336242,100338178,100338772,100345864,100349716,100351251	100336337,100338264,100338889,100345968,100349887,100351900	0.916667
suprapubic_skin_female_adult_53_years	chr7	7566527	7566533	7566527	-	High_confidence	4	4	8	0.446317	2.750000	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7552461	7566996	AC004982.2|ENST00000609497.5	-	7552461,7555155,7565913	7552922,7555189,7566996	0.875000
suprapubic_skin_female_adult_53_years	chr5	178206443	178206469	178206443	+	RAMPAGE_only	26	28	52	2.901059	4.533661	chr5	178206313	178206462	SINE|MIR|MIRb	-	chr5	178204570	178206866	STRG.56045.6	+	178204570,178204814,178205841	178204740,178205046,178206866	0.903846
suprapubic_skin_female_adult_53_years	chr10	119682528	119682553	119682552	-	High_confidence	12	15	37	2.064215	4.822001	chr10	119682381	119682650	LTR|ERVL|MLT2C1	+	chr10	119676655	119682547	STRG.94069.1	-	119676655,119682310	119677033,119682547	0.513514
suprapubic_skin_female_adult_53_years	chr11	65437264	65437645	65437508	+	RAMPAGE_only	22	25	573	31.967439	6.853846	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65423637	65444557	STRG.99047.6	+	65423637,65437100	65437047,65444557	0.998255
suprapubic_skin_female_adult_53_years	chr8	124673330	124673352	124673346	-	High_confidence	9	9	20	1.115792	3.921928	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.750000
suprapubic_skin_female_adult_53_years	chr10	102449838	102449845	102449838	+	High_confidence	5	14	19	1.060002	4.142664	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.789474
suprapubic_skin_female_adult_53_years	chr4	86780431	86780466	86780431	+	RAMPAGE_only	5	5	21	1.171582	4.201841	chr4	86780459	86780984	LINE|L1|L1ME1	+	chr4	86763008	86815149	STRG.43436.5	+	86763008,86764592,86765394,86766431,86767816,86770100,86771170,86772777,86774372,86775170,86775441,86780401,86782200,86784464,86785230,86785847,86796873,86799100,86803708,86805278,86807559,86809768,86811045,86814455	86763190,86764724,86765488,86766517,86769983,86770199,86771535,86772958,86774531,86775342,86775652,86780472,86782262,86784558,86785368,86785936,86796929,86799204,86803857,86805369,86807897,86809984,86811108,86815149	0.952381
suprapubic_skin_female_adult_53_years	chr17	36511103	36511104	36511103	-	High_confidence	11	11	15	0.836844	3.456565	chr17	36510964	36511121	SINE|MIR|MIRc	-	chr17	36509066	36511258	MYO19|ENST00000611063.1	-	36509066,36510745	36509135,36511258	0.866667
suprapubic_skin_female_adult_53_years	chr12	8837295	8837342	8837295	+	RAMPAGE_only	4	5	29	1.617898	4.356558	chr12	8837025	8837318	SINE|Alu|AluSz6	-	chr12	8822523	8888911	STRG.102906.2	+	8822523,8823181,8823719,8829726,8834661,8835506,8836254,8837439,8838335,8839112,8841368,8843133,8845441,8846076,8847548,8848719,8849668,8850159,8851783,8852209,8854127,8854779,8855508,8857163,8857945,8860880,8861134,8863793,8867841,8868229,8868536,8869134,8874424,8874970,8880523,8886506	8822713,8823365,8823882,8829779,8834682,8835666,8836339,8837566,8838450,8839222,8841536,8843361,8845502,8846222,8847698,8848914,8849759,8850274,8852012,8852336,8854249,8854831,8855592,8857588,8858102,8860955,8861297,8864008,8868057,8868357,8868627,8869203,8874527,8875012,8880616,8888911	0.827586
suprapubic_skin_female_adult_53_years	chr9	20658606	20658624	20658607	+	High_confidence	8	10	16	0.892634	3.240224	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658336	20715448	STRG.81776.8	+	20658336,20694519,20715321	20658826,20694564,20715448	0.625000
suprapubic_skin_female_adult_53_years	chr11	71480195	71480232	71480231	+	High_confidence	3	3	10	0.557896	2.921928	chr11	71480150	71480472	SINE|Alu|AluSq2	-	chr11	71480148	71490876	NADSYN1|ENST00000526039.6	+	71480148,71480754,71481355,71482000,71482848,71484311,71485541,71490844	71480274,71480879,71481404,71482025,71483017,71484447,71485648,71490876	1.000000
suprapubic_skin_female_adult_53_years	chr16	67183501	67183568	67183531	-	High_confidence	5	5	30	1.673688	4.351823	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.900000
suprapubic_skin_female_adult_53_years	chr1	166850329	166850330	166850329	+	RAMPAGE_only	11	11	11	0.613686	3.027169	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166846031	166856344	STRG.10249.4	+	166846031,166848937	166847592,166856344	0.909091
suprapubic_skin_female_adult_53_years	chr1	51403428	51403429	51403428	-	RAMPAGE_only	7	7	10	0.557896	2.503258	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.800000
suprapubic_skin_female_adult_53_years	chr6	17994506	17994522	17994506	-	RAMPAGE_only	7	7	14	0.781054	3.700440	chr6	17994273	17994502	SINE|MIR|MIR	-	chr6	17759182	17987623	KIF13A|NM_001105568.2	-	17759182,17764154,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571,17796668,17799265,17799951,17804360,17805474,17808767,17817019,17825767,17826037,17828239,17831100,17833960,17836877,17837471,17849376,17850322,17851954,17855436,17856029,17873376,17898167,17987053,17987408	17760877,17764946,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794704,17796820,17799439,17800113,17804510,17805615,17808930,17817233,17825934,17826124,17828370,17831235,17834071,17837090,17837583,17849489,17850457,17852042,17855617,17856122,17873437,17898180,17987144,17987623	0.642857
suprapubic_skin_female_adult_53_years	chr10	45594256	45594367	45594366	-	High_confidence	4	4	24	1.338950	4.088779	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45454592	45594491	STRG.90209.1	-	45454592,45459119,45461230,45463150,45464238,45489366,45533109,45553111,45594234	45458543,45459267,45461411,45463996,45464327,45489417,45533289,45553204,45594491	0.750000
suprapubic_skin_female_adult_53_years	chr2	71379985	71379986	71379985	+	High_confidence	11	11	12	0.669475	3.277613	chr2	71379856	71379996	DNA|TcMar-Tigger|MER44D	+	chr2	71380175	71398757	ZNF638|ENST00000491843.2	+	71380175,71380512,71380837,71396140,71398700	71380280,71380565,71380903,71396191,71398757	0.666667
suprapubic_skin_female_adult_53_years	chr4	102431244	102431260	102431244	-	High_confidence	5	5	16	0.892634	3.500000	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.812500
suprapubic_skin_female_adult_53_years	chr19	51886854	51886878	51886854	-	High_confidence	3	3	12	0.669475	3.095795	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51880697	51886465	ZNF577|ENST00000639183.1	-	51880697,51886115	51880877,51886465	0.583333
suprapubic_skin_female_adult_53_years	chr8	129786255	129786310	129786285	-	High_confidence	17	17	63	3.514745	4.969598	chr8	129786052	129786345	SINE|Alu|AluSg7	+	chr8	129748195	129786888	GSDMC|ENST00000276708.8	-	129748195,129749451,129749989,129750430,129751541,129751861,129752105,129752697,129760544,129762625,129765627,129776101,129777367,129786010	129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752820,129760589,129762731,129765793,129776285,129777591,129786888	0.968254
suprapubic_skin_female_adult_53_years	chr10	109873487	109873504	109873503	-	RAMPAGE_only	5	6	15	0.836844	3.324863	chr10	109873489	109874160	LINE|L1|L1MB7	+	chr10	109865053	109875668	XPNPEP1|ENST00000369658.5	-	109865053,109868613,109869952,109870730,109871791,109873366,109875527	109865312,109868712,109870029,109870904,109871861,109873427,109875668	0.666667
suprapubic_skin_female_adult_53_years	chr15	22566296	22566310	22566301	+	High_confidence	4	4	14	0.781054	3.334679	chr15	22566189	22566330	DNA|TcMar-Tigger|MER2	-	chr15	22566288	22590815	STRG.118723.7	+	22566288,22569148,22572928,22573278,22573974,22577429,22579583,22587343,22587495	22566362,22569291,22573181,22573415,22577332,22577555,22579723,22587391,22590815	0.928571
suprapubic_skin_female_adult_53_years	chr9	98011045	98011078	98011045	+	RAMPAGE_only	2	2	9	0.502106	2.725481	chr9	98010844	98011068	LINE|L1|L1MC5	-	chr9	97983360	98015943	ANP32B|ENST00000339399.4	+	97983360,97994630,97998555,98004963,98011270,98012420,98015363	97983609,97994780,97998678,98005153,98011389,98012472,98015943	1.000000
suprapubic_skin_female_adult_53_years	chr10	84205561	84205638	84205637	+	RAMPAGE_only	5	5	32	1.785267	4.300498	chr10	84205583	84205713	SINE|MIR|MIRb	+	chr10	84204552	84208862	CDHR1|ENST00000624091.1	+	84204552,84205731,84208173,84208728	84204605,84205927,84208377,84208862	0.687500
suprapubic_skin_female_adult_53_years	chr16	21160995	21161008	21160995	+	RAMPAGE_only	3	3	9	0.502106	2.725481	chr16	21160737	21161019	LINE|L1|L1MC	-	chr16	21158709	21166882	TMEM159|ENST00000577162.1	+	21158709,21160977,21161084,21166839	21158746,21161008,21161278,21166882	0.888889
suprapubic_skin_female_adult_53_years	chr10	73536338	73536384	73536383	-	RAMPAGE_only	10	10	26	1.450529	4.334963	chr10	73536351	73536426	LINE|L1|L1PBa	+	chr10	73497537	73534770	USP54|ENST00000466048.6	-	73497537,73500654,73504849,73505307,73516374,73520907,73523582,73526646,73529679,73530142,73534599	73499188,73500838,73504990,73505426,73517747,73521027,73523750,73526780,73529911,73530523,73534770	0.615385
suprapubic_skin_female_adult_53_years	chr14	103848782	103848814	103848813	-	High_confidence	9	12	29	1.617898	4.504706	chr14	103848808	103849048	SINE|MIR|MIRb	+	chr14	103778315	103848809	STRG.118434.10	-	103778315,103784794,103797370,103848271	103778821,103784914,103797518,103848809	0.931034
suprapubic_skin_female_adult_53_years	chr12	46640095	46640108	46640097	+	RAMPAGE_only	2	3	8	0.446317	2.807355	chr12	46636907	46643375	LINE|L1|L1PA14	+	chr12	46383678	46652550	STRG.104836.1	+	46383678,46387746,46455011,46470152,46537501,46571255,46578836,46598036	46384161,46387972,46455141,46470262,46537631,46578800,46597988,46652550	0.875000
suprapubic_skin_female_adult_53_years	chr8	29177614	29177667	29177645	-	RAMPAGE_only	2	2	9	0.502106	2.725481	chr8	29177619	29177927	SINE|Alu|AluJr	+	chr8	29067278	29198154	STRG.75070.2	-	29067278,29069726,29071619,29075280,29092744,29099132,29108138,29109433,29109917,29113462,29116830,29118867,29122590,29123365,29124023,29126481,29127121,29130532,29132307,29134039,29140062,29140467,29142156,29146377,29147391,29148576,29150296,29155725,29160732,29165661,29167372,29176067,29177465,29180103,29181918,29186291,29188514,29190996,29196186	29069571,29070766,29072316,29075343,29092878,29099241,29108192,29109511,29110070,29113555,29117007,29118992,29122646,29123492,29124123,29126511,29127268,29130665,29132465,29134210,29140191,29140617,29142303,29146540,29147602,29148767,29150383,29155856,29160867,29165772,29167585,29176179,29177578,29180238,29182006,29186472,29188607,29191057,29198154	0.555556
suprapubic_skin_female_adult_53_years	chr12	53173861	53173881	53173861	-	High_confidence	3	3	9	0.502106	2.947703	chr12	53173811	53174022	LINE|L1|L1MB7	-	chr12	53171945	53173919	CSAD|ENST00000498635.1	-	53171945,53172345,53172521,53173344,53173727	53171988,53172436,53172648,53173476,53173919	0.888889
suprapubic_skin_female_adult_53_years	chr8	116648864	116648917	116648864	-	RAMPAGE_only	18	19	101	5.634749	5.391346	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.950495
suprapubic_skin_female_adult_53_years	chr3	24018910	24018947	24018910	+	High_confidence	5	6	16	0.892634	3.373557	chr3	24018754	24020004	LTR|ERV1|LTR2752	-	chr3	24018910	24088975	STRG.30469.1	+	24018910,24087924	24019269,24088975	0.812500
suprapubic_skin_female_adult_53_years	chr13	46711787	46711842	46711841	+	RAMPAGE_only	6	7	16	0.892634	4.000000	chr13	46711708	46711858	LINE|L1|X9_LINE	-	chr13	46704998	46753040	STRG.110831.7	+	46704998,46723220,46728846,46733920,46750539	46712597,46723330,46728984,46733998,46753040	1.000000
suprapubic_skin_female_adult_53_years	chr19	35115804	35115835	35115822	+	High_confidence	2	2	9	0.502106	3.000000	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.555556
suprapubic_skin_female_adult_53_years	chr1	6472170	6472187	6472186	-	High_confidence	4	4	8	0.446317	2.500000	chr1	6472075	6472210	LINE|L2|L2b	+	chr1	6467121	6471583	PLEKHG5|ENST00000487949.4	-	6467121,6467824,6469041,6469334,6469543,6470235,6470505,6470734,6470989	6467572,6468586,6469241,6469450,6469676,6470355,6470643,6470884,6471583	0.875000
suprapubic_skin_female_adult_53_years	chr4	88773686	88774277	88774276	-	RAMPAGE_only	18	23	419	23.375841	7.144358	chr4	88773840	88774411	LINE|L2|L2a	+	chr4	88758789	88823201	STRG.43710.12	-	88758789,88767552,88767982,88787752,88790585,88805010,88822975	88758901,88767595,88781351,88787932,88790627,88805052,88823201	0.992840
suprapubic_skin_female_adult_53_years	chr2	186456802	186456832	186456802	-	RAMPAGE_only	2	3	10	0.557896	3.121928	chr2	186456735	186457043	SINE|Alu|AluJb	+	chr2	186213012	186486184	STRG.24937.1	-	186213012,186456714,186485799	186215090,186456851,186486184	0.600000
suprapubic_skin_female_adult_53_years	chr22	47860631	47860632	47860631	+	High_confidence	5	5	8	0.446317	2.807355	chr22	47860426	47860717	SINE|Alu|AluSp	-	chr22	47860670	47862062	AL121580.1|ENST00000449941.1	+	47860670,47861991	47860818,47862062	0.625000
suprapubic_skin_female_adult_53_years	chr11	14891192	14891223	14891192	-	High_confidence	4	5	13	0.725265	3.026987	chr11	14891179	14891312	SINE|MIR|MIR	+	chr11	14878037	14891651	CYP2R1|ENST00000532378.5	-	14878037,14879113,14880135,14885775,14890431,14890899	14878297,14879443,14880359,14885917,14890469,14891651	0.846154
suprapubic_skin_female_adult_53_years	chr5	150498202	150498217	150498216	+	High_confidence	3	3	7	0.390527	2.584963	chr5	150498149	150498389	SINE|MIR|MIR	+	chr5	150497777	150558211	NDST1|NM_001301063.1	+	150497777,150520867,150527803,150532944,150534866,150535699,150539227,150540081,150541569,150542847,150545311,150549677,150551752,150553212	150497979,150521767,150528298,150533032,150535021,150535885,150539356,150540264,150541666,150542971,150545486,150549787,150551855,150558211	0.714286
suprapubic_skin_female_adult_53_years	chr2	26260867	26260889	26260867	+	High_confidence	4	6	14	0.781054	3.392747	chr2	26260732	26261182	LTR|ERVL-MaLR|MLT1M	-	chr2	26260537	26290464	HADHB|ENST00000494615.1	+	26260537,26263379,26269952,26273650,26277072,26278613,26279134,26279993,26282844,26283003,26284116,26284882,26285406,26289917	26261593,26263479,26269997,26273750,26277160,26278801,26279315,26280115,26282924,26283051,26284204,26284957,26285571,26290464	0.928571
suprapubic_skin_female_adult_53_years	chr2	54709664	54709710	54709664	+	High_confidence	11	13	52	2.901059	5.037880	chr2	54708539	54710604	LTR|ERV1|MER52D	+	chr2	54709545	54717423	STRG.17868.1	+	54709545,54711498,54717406	54710612,54711541,54717423	0.923077
suprapubic_skin_female_adult_53_years	chr19	52783913	52783914	52783913	-	High_confidence	13	13	18	1.004213	3.947703	chr19	52783777	52783914	SINE|Alu|AluSp	-	chr19	52782794	52784041	STRG.142182.5	-	52782794	52784041	0.944444
suprapubic_skin_female_adult_53_years	chr12	123608320	123608321	123608320	+	RAMPAGE_only	10	10	13	0.725265	2.855389	chr12	123608252	123608470	DNA|hAT-Charlie|MER58A	-	chr12	123602076	123619716	DDX55|ENST00000542286.5	+	123602076,123605930,123606072,123607431,123609938,123613169,123615184,123616510,123617757,123618668,123619447	123602256,123605981,123606159,123608829,123610128,123613252,123615316,123616603,123617872,123618837,123619716	0.923077
suprapubic_skin_female_adult_53_years	chr19	35668451	35668475	35668451	+	RAMPAGE_only	3	3	10	0.557896	2.947703	chr19	35668318	35668452	SINE|MIR|MIRc	-	chr19	35666812	35678160	UPK1A|ENST00000379013.6	+	35666812,35668453,35673231,35673437,35675839,35676235,35677811,35677974	35666896,35668654,35673306,35673545,35676019,35676333,35677895,35678160	0.800000
suprapubic_skin_female_adult_53_years	chr19	39198248	39198251	39198248	+	RAMPAGE_only	3	3	8	0.446317	3.000000	chr19	39198261	39198457	SINE|MIR|MIRb	+	chr19	39196963	39201882	NCCRP1|NM_001001414.1	+	39196963,39198052,39198201,39199169,39200345,39200615	39197319,39198115,39198253,39199265,39200484,39201882	0.500000
suprapubic_skin_female_adult_53_years	chr8	12746882	12746884	12746883	-	RAMPAGE_only	6	9	12	0.669475	3.027169	chr8	12746638	12746845	SINE|MIR|MIR	-	chr8	12722980	12755490	STRG.74542.3	-	12722980,12725726,12728900,12729173,12731735,12735285,12736700,12736899,12740873,12743163,12752217	12723254,12725879,12729063,12729332,12731857,12735400,12736797,12738144,12740996,12752155,12755490	0.916667
suprapubic_skin_female_adult_53_years	chrX	147937502	147937543	147937542	+	RAMPAGE_only	3	3	12	0.669475	3.095795	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.157513.14	+	147940580,147943130,147945533	147940662,147945051,147950315	0.750000
suprapubic_skin_female_adult_53_years	chr3	22105678	22105680	22105678	-	RAMPAGE_only	3	6	8	0.446317	2.807355	chr3	22105437	22105885	LTR|ERVL|MLT2B1	-	chr3	21510860	22373193	ZNF385D|ENST00000494108.2	-	21510860,21564573,21664885,22168816,22372449,22373054	21511023,21564684,21665028,22169035,22372837,22373193	0.625000
suprapubic_skin_female_adult_53_years	chr5	109383497	109383509	109383499	-	High_confidence	3	5	12	0.669475	3.277613	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.916667
suprapubic_skin_female_adult_53_years	chr17	64787478	64787524	64787523	-	RAMPAGE_only	4	4	11	0.613686	3.277613	chr17	64787450	64787626	SINE|MIR|MIRb	+	chr17	64785258	64829208	PLEKHM1P1|ENST00000582201.5	-	64785258,64786566,64787247,64792348,64797263,64799999,64804829,64814862,64821766,64824624,64829160	64785367,64786724,64787311,64792542,64797409,64800917,64805100,64815245,64822393,64824872,64829208	0.727273
suprapubic_skin_female_adult_53_years	chr3	50484122	50484146	50484145	-	RAMPAGE_only	5	6	16	0.892634	3.773557	chr3	50483973	50484750	LINE|L2|L2a	+	chr3	50362798	50503423	CACNA2D2|ENST00000423994.6	-	50362798,50364887,50365074,50365355,50365632,50365809,50366010,50366266,50366577,50366830,50367010,50367393,50367641,50367811,50368137,50370319,50373064,50374736,50375643,50375808,50375962,50376113,50377466,50377731,50378007,50378283,50378914,50379091,50379431,50379724,50379967,50380747,50380994,50384195,50387567,50394108,50434312,50476117,50503217	50364806,50364976,50365184,50365482,50365688,50365862,50366163,50366338,50366628,50366919,50367109,50367497,50367704,50367902,50368235,50370380,50373085,50374813,50375705,50375880,50376034,50376188,50377541,50377803,50378097,50378333,50378993,50379199,50379590,50379824,50380018,50380805,50381126,50384337,50387612,50394168,50434429,50476199,50503423	0.625000
suprapubic_skin_female_adult_53_years	chr1	238486033	238486037	238486036	-	High_confidence	3	6	11	0.613686	3.277613	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.818182
suprapubic_skin_female_adult_53_years	chr10	25772112	25772183	25772112	-	High_confidence	10	10	26	1.450529	4.209867	chr10	25770441	25774433	LTR|ERV1|HERVH-int	-	chr10	25771935	25772154	STRG.89312.1	-	25771935	25772154	0.500000
suprapubic_skin_female_adult_53_years	chr2	71139665	71139666	71139665	+	RAMPAGE_only	18	18	22	1.227371	3.921928	chr2	71139578	71139748	DNA|hAT-Charlie|MER5A	-	chr2	71134623	71150101	STRG.19663.2	+	71134623,71138489,71141231,71144427,71147998,71149222,71149865	71134797,71139862,71141369,71144538,71148106,71149453,71150101	0.818182
suprapubic_skin_female_adult_53_years	chr8	29148784	29148854	29148853	-	RAMPAGE_only	4	4	28	1.562109	4.469670	chr8	29148814	29149121	LINE|L2|L2c	-	chr8	29067278	29198154	STRG.75070.2	-	29067278,29069726,29071619,29075280,29092744,29099132,29108138,29109433,29109917,29113462,29116830,29118867,29122590,29123365,29124023,29126481,29127121,29130532,29132307,29134039,29140062,29140467,29142156,29146377,29147391,29148576,29150296,29155725,29160732,29165661,29167372,29176067,29177465,29180103,29181918,29186291,29188514,29190996,29196186	29069571,29070766,29072316,29075343,29092878,29099241,29108192,29109511,29110070,29113555,29117007,29118992,29122646,29123492,29124123,29126511,29127268,29130665,29132465,29134210,29140191,29140617,29142303,29146540,29147602,29148767,29150383,29155856,29160867,29165772,29167585,29176179,29177578,29180238,29182006,29186472,29188607,29191057,29198154	0.714286
suprapubic_skin_female_adult_53_years	chr7	64897851	64897943	64897942	+	RAMPAGE_only	15	15	38	2.120005	4.458546	chr7	64897708	64898026	SINE|Alu|AluY	-	chr7	64903241	64931577	ZNF273|NR_003099.1	+	64903241,64917029,64917580,64918196,64927653	64903419,64917118,64917707,64918292,64931577	0.789474
suprapubic_skin_female_adult_53_years	chr17	50737288	50737340	50737288	+	RAMPAGE_only	3	3	30	1.673688	4.548394	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50719628	50751004	LUC7L3|ENST00000508482.5	+	50719628,50740305,50741101,50741656,50743705,50744651,50745719,50746541,50750500,50750723	50719831,50740345,50741246,50741731,50743810,50744813,50746003,50746702,50750641,50751004	0.500000
suprapubic_skin_female_adult_53_years	chr2	61259719	61259762	61259719	-	RAMPAGE_only	3	3	12	0.669475	2.688722	chr2	61259391	61259685	SINE|Alu|AluSz	-	chr2	61226787	61280333	USP34|ENST00000453734.1	-	61226787,61228644,61228826,61229547,61232451,61235844,61236025,61236160,61236324,61241559,61241765,61245209,61246323,61248510,61256383,61256872,61257051,61257203,61259710,61265396,61265983,61278164,61278387,61280243	61227218,61228719,61228995,61229633,61232532,61235910,61236073,61236236,61236389,61241655,61241819,61245288,61246477,61248683,61256478,61256950,61257108,61257350,61259776,61265557,61266167,61278285,61278443,61280333	0.583333
suprapubic_skin_female_adult_53_years	chr22	29167483	29167484	29167483	+	RAMPAGE_only	23	23	25	1.394740	3.795089	chr22	29167432	29167562	LTR|ERVL|LTR84b	-	chr22	29073117	29168333	KREMEN1|ENST00000327813.9	+	29073117,29094257,29098861,29121356,29125262,29137341,29138623,29140281,29141943,29167043	29073227,29094420,29098953,29121481,29125416,29137674,29138833,29140366,29142100,29168333	0.880000
suprapubic_skin_female_adult_53_years	chr1	25244070	25244144	25244070	-	High_confidence	17	17	109	6.081066	4.296735	chr1	25244059	25244116	SINE|Alu|Alu	-	chr1	25242248	25244105	RSRP1|ENST00000569495.5	-	25242248,25242538,25243549	25242426,25242705,25244105	0.990826
suprapubic_skin_female_adult_53_years	chr1	219199691	219199756	219199755	+	RAMPAGE_only	3	4	17	0.948423	2.777777	chr1	219199609	219199836	SINE|Alu|AluY	-	chr1	219173874	219209378	STRG.12592.5	+	219173874,219179146	219173981,219209378	0.941176
suprapubic_skin_female_adult_53_years	chrX	154058543	154058579	154058578	-	RAMPAGE_only	6	7	18	1.004213	3.292770	chrX	154058563	154058635	LTR|ERVL-MaLR|MLT1J	+	chrX	154031268	154060358	MECP2|ENST00000486506.5	-	154031268,154032206,154056940,154057742,154058398	154031450,154032557,154057254,154057842,154060358	0.555556
suprapubic_skin_female_adult_53_years	chr3	120326468	120326470	120326468	-	RAMPAGE_only	18	21	28	1.562109	3.840266	chr3	120326164	120326468	SINE|Alu|AluSx	-	chr3	120324508	120349339	LRRC58|ENST00000295628.3	-	120324508,120334861,120335824,120348743	120331408,120335139,120335953,120349339	0.892857
suprapubic_skin_female_adult_53_years	chr17	5054767	5054811	5054767	-	RAMPAGE_only	2	2	14	0.781054	2.896292	chr17	5054540	5054836	SINE|Alu|AluSx	+	chr17	5054096	5055924	STRG.129592.1	-	5054096	5055924	0.928571
suprapubic_skin_female_adult_53_years	chr17	28234030	28234054	28234030	-	High_confidence	14	15	48	2.677901	5.202804	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28230659	28234021	STRG.130826.1	-	28230659,28233917	28233342,28234021	0.562500
suprapubic_skin_female_adult_53_years	chr22	47635301	47635306	47635304	+	RAMPAGE_only	2	5	9	0.502106	2.947703	chr22	47635022	47635429	LTR|ERVL|MLT2D	+	chr22	47631718	47702113	STRG.151665.2	+	47631718,47635179,47686199,47686574,47686802,47687140,47690661	47631886,47635353,47686312,47686695,47686938,47687210,47702113	0.777778
suprapubic_skin_female_adult_53_years	chr16	3129639	3129664	3129639	-	RAMPAGE_only	1	1	7	0.390527	2.584963	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3128832	3132042	ZNF213-AS1|ENST00000573447.1	-	3128832,3131746	3129653,3132042	0.714286
suprapubic_skin_female_adult_53_years	chr1	228108555	228108590	228108555	-	High_confidence	3	3	8	0.446317	2.750000	chr1	228108453	228108551	DNA|hAT-Charlie|MER5A	-	chr1	228106679	228108573	STRG.13188.22	-	228106679,228107667,228108436	228106918,228108318,228108573	1.000000
suprapubic_skin_female_adult_53_years	chr6	38612975	38612976	38612975	-	RAMPAGE_only	4	4	7	0.390527	2.584963	chr6	38612953	38613271	DNA|hAT-Charlie|MER33	+	chr6	38577598	38598094	BTBD9|ENST00000403056.2	-	38577598,38580217,38592575,38593963,38597909	38577719,38580437,38592840,38594327,38598094	0.571429
suprapubic_skin_female_adult_53_years	chr13	101583343	101583349	101583343	+	RAMPAGE_only	2	3	7	0.390527	2.521641	chr13	101583386	101583681	LINE|L1|L1MA1	+	chr13	101598144	101718344	ITGBL1|ENST00000490242.2	+	101598144,101692584,101706755,101714437,101715562,101717498	101598299,101692701,101706902,101714551,101715670,101718344	1.000000
suprapubic_skin_female_adult_53_years	chr3	57267745	57267782	57267779	+	RAMPAGE_only	9	9	38	2.120005	4.426734	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.868421
suprapubic_skin_female_adult_53_years	chr11	118258905	118258994	118258993	-	RAMPAGE_only	5	5	32	1.785267	4.163910	chr11	118258602	118259001	LTR|ERVL-MaLR|MSTA	+	chr11	118253415	118263174	STRG.101418.7	-	118253415,118257237,118262437	118255233,118260201,118263174	1.000000
suprapubic_skin_female_adult_53_years	chr2	159940547	159940573	159940572	-	RAMPAGE_only	3	4	14	0.781054	3.392747	chr2	159940405	159940556	SINE|Alu|AluJo	-	chr2	159924888	159945000	STRG.23207.8	-	159924888,159941745,159942126,159944905	159940567,159941992,159942159,159945000	0.928571
suprapubic_skin_female_adult_53_years	chr8	27313206	27313246	27313245	+	RAMPAGE_only	3	3	16	0.892634	3.702820	chr8	27312989	27313373	LTR|ERVL-MaLR|THE1D	+	chr8	27311481	27459391	PTK2B|NM_173174.2	+	27311481,27312303,27313204,27322401,27323266,27325563,27397547,27419894,27420656,27422303,27430092,27430363,27430875,27431397,27432259,27433434,27434092,27434512,27435742,27436250,27437121,27437395,27437764,27439030,27439308,27440236,27442874,27444205,27445793,27450748,27451042,27451484,27453113,27454153,27454530,27458293	27311709,27312387,27313287,27322499,27323426,27325681,27397788,27420073,27420744,27422383,27430155,27430418,27431016,27431472,27432361,27433552,27434132,27434559,27435793,27436348,27437206,27437496,27437880,27439131,27439398,27440441,27442983,27444271,27445919,27450895,27451078,27451509,27453160,27454291,27454611,27459391	0.562500
suprapubic_skin_female_adult_53_years	chr5	116298346	116298347	116298346	+	RAMPAGE_only	8	8	10	0.557896	2.503258	chr5	116298218	116298454	LTR|ERVL-MaLR|MLT1J2	+	chr5	116300912	116308508	STRG.52883.8	+	116300912,116301030	116300948,116308508	0.800000
suprapubic_skin_female_adult_53_years	chr17	42117145	42117162	42117145	-	RAMPAGE_only	5	5	10	0.557896	3.321928	chr17	42117078	42117181	LINE|CR1|L3	+	chr17	42114223	42115833	KAT2A|ENST00000588759.1	-	42114223,42114357,42114489,42114953,42115722	42114282,42114394,42114604,42115035,42115833	0.600000
suprapubic_skin_female_adult_53_years	chr19	15054967	15055009	15054970	+	High_confidence	7	7	18	1.004213	3.616875	chr19	15054946	15055103	SINE|Alu|AluJb	-	chr19	15054901	15056278	CASP14|ENST00000598738.1	+	15054901,15055429,15055984	15055274,15055533,15056278	0.500000
suprapubic_skin_female_adult_53_years	chr14	64087849	64087850	64087849	+	RAMPAGE_only	15	18	18	1.004213	3.794653	chr14	64087899	64088180	SINE|Alu|AluSz	+	chr14	64075614	64226430	SYNE2|ENST00000394768.6	+	64075614,64078465,64080455,64081442,64087418,64087670,64089573,64090865,64093348,64097948,64098746,64101931,64107490,64113340,64119426,64120926,64122011,64122285,64125078,64126326,64126597,64128451,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64165284,64167232,64167494,64168876,64170227,64174943,64177357,64186423,64188549,64190070,64202800,64208757,64209427,64209941,64211960,64212810,64214193,64216247,64218397,64219207,64220436,64221575,64223188,64224460,64224995,64225318	64076100,64078606,64080638,64081580,64087487,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64122427,64125210,64126479,64126807,64128553,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64165410,64167387,64167639,64168971,64170462,64175138,64177483,64186579,64188708,64190237,64202963,64208945,64209578,64210124,64212098,64213005,64214470,64216387,64218512,64219410,64220637,64221704,64223380,64224547,64225045,64226430	1.000000
suprapubic_skin_female_adult_53_years	chr19	11033783	11033806	11033783	+	High_confidence	9	9	20	1.115792	3.303702	chr19	11033706	11034051	SINE|tRNA|LFSINE_Vert	-	chr19	11033486	11061915	SMARCA4|ENST00000538456.4	+	11033486,11034122,11034913,11041297,11058254,11059752,11060044,11061783	11033517,11034200,11035132,11041560,11058363,11059885,11060187,11061915	1.000000
suprapubic_skin_female_adult_53_years	chr5	177515469	177515495	177515470	-	High_confidence	7	10	19	1.060002	3.431624	chr5	177515290	177515465	SINE|MIR|MIRb	-	chr5	177513071	177515353	DDX41|ENST00000511040.5	-	177513071,177513352,177513684,177514700,177514915,177515185	177513082,177513484,177513847,177514837,177515025,177515353	0.894737
suprapubic_skin_female_adult_53_years	chr21	15824743	15824772	15824771	+	RAMPAGE_only	3	5	11	0.613686	3.277613	chr21	15824607	15824886	SINE|Alu|AluSx1	-	chr21	15730024	15880072	USP25|NM_013396.4	+	15730024,15762890,15765996,15777903,15791501,15799756,15805120,15808808,15811136,15818697,15824038,15824965,15826203,15826976,15830530,15831400,15833347,15842397,15864267,15866265,15870067,15874402,15877795,15878302	15730438,15762968,15766141,15778027,15791664,15799843,15805258,15808885,15811210,15818846,15824166,15825061,15826365,15827203,15830601,15831629,15833548,15842540,15864446,15866344,15870147,15874526,15877991,15880072	0.909091
suprapubic_skin_female_adult_53_years	chr17	38708956	38708983	38708982	+	High_confidence	2	2	7	0.390527	2.807355	chr17	38708924	38709069	DNA|hAT-Charlie|MER3	-	chr17	38709079	38715677	MLLT6|ENST00000618652.1	+	38709079,38709481,38711846,38712690,38715611	38709276,38709575,38712014,38712789,38715677	1.000000
suprapubic_skin_female_adult_53_years	chr22	41284795	41284796	41284795	-	RAMPAGE_only	9	9	10	0.557896	2.947703	chr22	41284590	41284865	SINE|Alu|AluJb	+	chr22	41245614	41286207	STRG.151238.3	-	41245614,41249329,41249728,41251006,41252871,41254307,41256020,41256710,41257947,41261445,41264663,41268096,41274599,41280932,41281456	41246672,41249451,41249928,41251109,41252991,41254494,41256290,41256824,41258106,41261580,41264843,41268156,41274727,41281082,41286207	0.900000
suprapubic_skin_female_adult_53_years	chr5	96746242	96746274	96746261	+	RAMPAGE_only	4	4	22	1.227371	3.970573	chr5	96746196	96746292	SINE|MIR|MIRc	-	chr5	96743672	96748717	CAST|ENST00000512191.1	+	96743672,96746341,96747344,96748517	96743746,96746425,96747392,96748717	0.500000
suprapubic_skin_female_adult_53_years	chr4	8436023	8436026	8436023	-	High_confidence	5	7	14	0.781054	3.521641	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366711	8436375	STRG.40237.3	-	8366711,8370907,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8408935,8410211,8414291,8414853,8415765,8416377,8435922	8367080,8370994,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8409149,8410355,8414381,8414928,8415999,8416535,8436375	0.714286
suprapubic_skin_female_adult_53_years	chr9	109499364	109499365	109499364	+	High_confidence	11	11	15	0.836844	3.664498	chr9	109499033	109499437	LINE|L2|L2a	-	chr9	109498379	109514752	STRG.86302.1	+	109498379,109514515	109498700,109514752	0.600000
suprapubic_skin_female_adult_53_years	chr14	53043738	53043756	53043738	-	RAMPAGE_only	5	5	10	0.557896	2.921928	chr14	53043432	53043727	SINE|Alu|AluJb	-	chr14	53036744	53153098	DDHD1|ENST00000612692.4	-	53036744,53051843,53054437,53055659,53058476,53061125,53062942,53072596,53073740,53091784,53093315,53103682,53152260,53152705	53046949,53051927,53054629,53055912,53058626,53061201,53063205,53072703,53073847,53091932,53093444,53103856,53152318,53153098	1.000000
suprapubic_skin_female_adult_53_years	chr1	209429209	209429407	209429260	+	High_confidence	15	15	158	8.814756	6.252432	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429303	209432407	STRG.12036.7	+	209429303,209430424,209432203	209429408,209431825,209432407	0.829114
suprapubic_skin_female_adult_53_years	chrX	41341054	41341078	41341054	+	High_confidence	11	12	28	1.562109	4.392747	chrX	41340986	41341284	SINE|Alu|AluSp	-	chrX	41341069	41350163	DDX3X|ENST00000646679.1	+	41341069,41342494,41342736,41343215,41343736,41344029,41344238,41345179,41345403,41346228,41346504,41346858,41347314,41347639	41341616,41342653,41342836,41343351,41343822,41344128,41344399,41345324,41345548,41346410,41346622,41347012,41347451,41350163	0.928571
suprapubic_skin_female_adult_53_years	chr14	23562705	23562706	23562705	-	High_confidence	4	4	7	0.390527	2.584963	chr14	23562620	23562761	SINE|Alu|FLAM_C	+	chr14	23561408	23563000	AP1G2|ENST00000556966.1	-	23561408,23561511,23561961,23562503	23561431,23561635,23562415,23563000	0.714286
suprapubic_skin_female_adult_53_years	chr11	65206316	65206336	65206316	+	High_confidence	3	4	7	0.390527	2.521641	chr11	65206214	65206363	SINE|MIR|MIR	-	chr11	65206256	65209383	CAPN1|ENST00000525013.1	+	65206256,65206779,65208054,65208204,65209322	65206674,65206819,65208120,65208262,65209383	0.857143
suprapubic_skin_female_adult_53_years	chr9	127478821	127478858	127478857	+	High_confidence	8	8	24	1.338950	4.095795	chr9	127478724	127478893	DNA|hAT-Charlie|MER5B	-	chr9	127479385	127503499	LRSAM1|ENST00000483302.5	+	127479385,127479838,127481182,127482949,127485735,127487675,127489443,127491214,127492801,127495319,127495963,127497252,127501009,127502773	127479505,127479978,127481227,127483020,127485840,127487763,127489518,127491295,127492897,127495418,127496095,127497334,127501143,127503499	0.875000
suprapubic_skin_female_adult_53_years	chr7	30568893	30568894	30568893	-	RAMPAGE_only	9	9	11	0.613686	3.121928	chr7	30568321	30569340	LTR|ERV1|MER4-int	+	chr7	30558095	30573088	GARS-DT|ENST00000584621.5	-	30558095,30561465,30563730,30568832,30572999	30559355,30562128,30563998,30568989,30573088	0.818182
suprapubic_skin_female_adult_53_years	chr1	39315377	39315407	39315406	+	RAMPAGE_only	14	15	28	1.562109	4.137538	chr1	39314609	39315444	LINE|L1|L1MC4	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.571429
suprapubic_skin_female_adult_53_years	chr2	232845838	232845876	232845848	+	RAMPAGE_only	4	5	20	1.115792	3.511085	chr2	232845876	232846546	LINE|CR1|L3	+	chr2	232844688	232858612	STRG.27911.22	+	232844688,232847347,232856792	232845886,232850409,232858612	0.950000
suprapubic_skin_female_adult_53_years	chr8	39032725	39032753	39032725	+	High_confidence	4	4	24	1.338950	4.418296	chr8	39031444	39032803	LINE|L1|L1P2	-	chr8	39032670	39083142	STRG.75428.2	+	39032670,39041945,39054480,39055576,39071297,39077227,39082640,39082967	39032836,39042117,39054573,39055772,39071403,39077411,39082721,39083142	0.875000
suprapubic_skin_female_adult_53_years	chr14	34536102	34536122	34536102	-	High_confidence	3	5	13	0.725265	3.418296	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.846154
suprapubic_skin_female_adult_53_years	chr20	24111779	24111792	24111786	-	High_confidence	5	5	10	0.557896	2.725481	chr20	24111008	24111851	LINE|L1|L1M5	+	chr20	24094158	24111975	STRG.144429.1	-	24094158,24111724	24095014,24111975	0.700000
suprapubic_skin_female_adult_53_years	chr1	9102297	9102298	9102297	-	RAMPAGE_only	4	4	7	0.390527	2.807355	chr1	9102127	9102435	SINE|Alu|AluSx	+	chr1	9100304	9129170	GPR157|ENST00000377411.4	-	9100304,9105485,9111275,9128644	9104634,9105680,9111489,9129170	0.857143
suprapubic_skin_female_adult_53_years	chr1	166850054	166850241	166850124	+	RAMPAGE_only	27	33	158	8.814756	6.025278	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166846031	166856344	STRG.10249.4	+	166846031,166848937	166847592,166856344	0.993671
suprapubic_skin_female_adult_53_years	chr15	82821744	82821756	82821744	+	RAMPAGE_only	5	5	9	0.502106	2.947703	chr15	82820926	82821954	LINE|L1|L1MC5a	-	chr15	82817919	82826794	WHAMM|ENST00000560964.1	+	82817919,82819322,82823099,82826387,82826750	82818089,82819488,82823287,82826496,82826794	0.888889
suprapubic_skin_female_adult_53_years	chr11	65429201	65430029	65429589	+	RAMPAGE_only	240	243	4382	244.470010	7.820042	chr11	65429519	65429591	LINE|L1|L1ME4a	-	chr11	65423637	65444557	STRG.99047.6	+	65423637,65437100	65437047,65444557	0.999544
suprapubic_skin_female_adult_53_years	chr19	10379686	10379722	10379686	-	High_confidence	7	8	19	1.060002	3.326360	chr19	10379599	10379809	SINE|MIR|MIRb	+	chr19	10368328	10380510	TYK2|ENST00000530829.1	-	10368328,10369756,10378213,10379614,10380379	10368418,10369877,10378426,10379779,10380510	0.736842
suprapubic_skin_female_adult_53_years	chr4	69841494	69841531	69841494	-	RAMPAGE_only	5	5	17	0.948423	2.952820	chr4	69841433	69841617	SINE|Alu|AluJo	+	chr4	69820927	69847786	STRG.42359.9	-	69820927,69836368,69844160,69847697	69822589,69842106,69844341,69847786	0.941176
suprapubic_skin_female_adult_53_years	chr11	65382789	65382835	65382789	-	High_confidence	3	3	10	0.557896	3.321928	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375191	65382674	SLC25A45|NM_182556.3	-	65375191,65376817,65379375,65379866,65380131,65381914,65382485	65376675,65377076,65379561,65379938,65380175,65381969,65382674	0.600000
suprapubic_skin_female_adult_53_years	chr6	47663432	47663433	47663432	+	RAMPAGE_only	6	6	7	0.390527	2.584963	chr6	47663202	47663516	SINE|Alu|AluY	-	chr6	47656589	47697797	ADGRF2|ENST00000467205.6	+	47656589,47663400,47673390,47677842,47678982,47680070,47681264,47686991,47690541,47693671,47694989	47656659,47663577,47673491,47677885,47679134,47680304,47682626,47687033,47690601,47693748,47697797	0.571429
suprapubic_skin_female_adult_53_years	chr3	138095129	138095147	138095146	-	RAMPAGE_only	8	10	15	0.836844	3.640224	chr3	138095060	138095271	SINE|MIR|MIR	+	chr3	138092351	138103778	DZIP1L|ENST00000490472.1	-	138092351,138094861,138097762,138103470	138092544,138094983,138097847,138103778	1.000000
suprapubic_skin_female_adult_53_years	chr11	64226142	64226180	64226158	-	High_confidence	30	30	169	9.428442	6.253798	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.946746
suprapubic_skin_female_adult_53_years	chr1	190868	190869	190868	-	RAMPAGE_only	6	6	8	0.446317	3.000000	chr1	190494	190928	LINE|CR1|L3	+	chr1	182807	195411	STRG.51.5	-	182807,185490,186316,187128,187379,187754,188438,188790	185350,185559,186469,187287,187577,188266,188584,195411	0.875000
suprapubic_skin_female_adult_53_years	chr1	21875638	21875641	21875639	-	High_confidence	4	8	11	0.613686	3.459432	chr1	21875470	21875616	SINE|MIR|MIRb	-	chr1	21874477	21875208	HSPG2|ENST00000498495.1	-	21874477,21874615,21874890	21874533,21874729,21875208	0.727273
suprapubic_skin_female_adult_53_years	chr11	119010477	119010503	119010502	+	High_confidence	10	11	27	1.506319	4.134336	chr11	119010449	119010690	LINE|L1|L1MC4	+	chr11	119009533	119012177	CCDC84|ENST00000528088.1	+	119009533,119011220,119011938,119012148	119010830,119011311,119012003,119012177	0.851852
suprapubic_skin_female_adult_53_years	chr2	159219427	159219464	159219463	+	RAMPAGE_only	2	2	9	0.502106	2.500000	chr2	159219446	159219554	LINE|L1|L1MC5a	-	chr2	159199017	159232655	TANC1|ENST00000470074.1	+	159199017,159217496,159219237,159224231,159225687,159227818,159228795,159229577	159199053,159217630,159219867,159224364,159225779,159227965,159228896,159232655	0.888889
suprapubic_skin_female_adult_53_years	chr16	81664294	81664343	81664304	+	RAMPAGE_only	4	4	27	1.506319	3.940073	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.962963
suprapubic_skin_female_adult_53_years	chr13	49495740	49495744	49495743	+	High_confidence	5	6	9	0.502106	3.169925	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495609	49528992	PHF11|NM_001040443.2	+	49495609,49506634,49513058,49518017,49520893,49522042,49523174,49524084,49526386,49528510	49496095,49506756,49513166,49518151,49520940,49522107,49523241,49524216,49526458,49528992	0.888889
suprapubic_skin_female_adult_53_years	chr1	17240573	17240574	17240573	+	High_confidence	12	12	18	1.004213	3.725481	chr1	17240361	17240597	SINE|MIR|MIRb	+	chr1	17239631	17245968	PADI1|ENST00000648847.1	+	17239631,17240634,17244009	17239783,17240760,17245968	0.777778
suprapubic_skin_female_adult_53_years	chr8	133255145	133255331	133255203	-	RAMPAGE_only	16	17	158	8.814756	6.013352	chr8	133255180	133255391	SINE|MIR|MIRb	+	chr8	133237175	133256228	NDRG1|ENST00000519278.5	-	133237175,133242022,133244354,133246615,133247874,133248714,133250439,133254538	133239119,133242074,133244390,133246663,133247926,133248771,133250543,133256228	0.981013
suprapubic_skin_female_adult_53_years	chr7	66795519	66795534	66795532	+	RAMPAGE_only	3	6	14	0.781054	2.873141	chr7	66795573	66795610	DNA|hAT-Tip100|MamTip2	+	chr7	66797371	66808064	RABGEF1|ENST00000461017.1	+	66797371,66799322,66805139,66807837	66797506,66799414,66805396,66808064	0.785714
suprapubic_skin_female_adult_53_years	chr12	105229978	105230029	105229978	-	High_confidence	36	36	62	3.458955	5.215061	chr12	105229766	105230079	SINE|Alu|AluSq2	-	chr12	105211288	105229860	APPL2|ENST00000549056.1	-	105211288,105217068,105217665,105229124,105229627	105211317,105217140,105217725,105229223,105229860	0.838710
suprapubic_skin_female_adult_53_years	chr10	95697656	95697682	95697656	+	High_confidence	23	23	69	3.849482	5.388790	chr10	95697436	95697843	LTR|ERVL-MaLR|MSTC	+	chr10	95697666	95698123	STRG.92877.1	+	95697666	95698123	0.681159
suprapubic_skin_female_adult_53_years	chr2	28906309	28906329	28906309	+	RAMPAGE_only	2	3	12	0.669475	3.084963	chr2	28906339	28906430	SINE|Alu|AluJb	+	chr2	28905005	28926485	WDR43|ENST00000296126.6	+	28905005,28906459,28912589,28914068,28917892,28922918,28924981,28926467	28905051,28906581,28912710,28914208,28917995,28922983,28925153,28926485	0.500000
suprapubic_skin_female_adult_53_years	chr9	62372016	62372027	62372016	-	RAMPAGE_only	3	4	8	0.446317	2.750000	chr9	62371964	62372485	LINE|L1|L1MB7	+	chr9	62360159	62376783	STRG.83258.3	-	62360159	62376783	0.875000
suprapubic_skin_female_adult_53_years	chr12	57105974	57105980	57105974	-	RAMPAGE_only	3	4	14	0.781054	3.392747	chr12	57105944	57106049	DNA|hAT-Tip100|MER91A	-	chr12	57104467	57108283	STAT6|ENST00000555641.1	-	57104467,57104725,57105150,57105467,57106527,57106692,57107230,57107604,57108162	57104586,57104813,57105339,57106339,57106580,57106831,57107314,57107743,57108283	0.857143
suprapubic_skin_female_adult_53_years	chr7	99037299	99037304	99037299	-	RAMPAGE_only	9	9	16	0.892634	3.750000	chr7	99037246	99037538	SINE|Alu|AluSx1	-	chr7	99027437	99039190	STRG.70571.5	-	99027437,99033036,99035514,99037066	99030683,99033121,99035716,99039190	0.812500
suprapubic_skin_female_adult_53_years	chr7	134527596	134527597	134527596	+	High_confidence	12	12	12	0.669475	3.251629	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	1.000000
suprapubic_skin_female_adult_53_years	chr20	44696111	44696112	44696111	-	High_confidence	9	12	12	0.669475	3.418296	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.833333
suprapubic_skin_female_adult_53_years	chr11	65187820	65187831	65187820	+	High_confidence	8	8	16	0.892634	3.327820	chr11	65187604	65187911	SINE|Alu|AluSx1	+	chr11	65187940	65206075	CAPN1|ENST00000533079.5	+	65187940,65188413,65188585,65204682,65205709	65188040,65188488,65188746,65204858,65206075	0.750000
suprapubic_skin_female_adult_53_years	chr1	75376210	75376269	75376223	-	High_confidence	17	20	67	3.737903	5.445160	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75202034	75376227	STRG.5702.1	-	75202034,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75211552,75213793,75213989,75214678,75215857,75217960,75218595,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75376227	0.940299
suprapubic_skin_female_adult_53_years	chr6	7577603	7577626	7577603	+	RAMPAGE_only	3	3	12	0.669475	3.584963	chr6	7577351	7577621	SINE|Alu|AluSp	-	chr6	7541616	7586572	DSP|ENST00000418664.2	+	7541616,7555717,7558115,7559225,7562651,7563735,7565358,7566376,7567353,7567780,7568436,7569185,7570436,7571382,7571841,7574085,7574656,7575294,7576293,7576958,7577778,7578463,7579274,7582641	7542085,7555820,7558264,7559400,7562780,7563786,7565520,7566481,7567449,7567906,7568589,7569340,7570563,7571584,7572068,7574252,7574795,7575488,7576456,7577042,7577886,7578562,7579772,7586572	0.500000
suprapubic_skin_female_adult_53_years	chr17	41871762	41871833	41871819	-	RAMPAGE_only	7	7	16	0.892634	3.773557	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.687500
suprapubic_skin_female_adult_53_years	chr12	9877726	9877729	9877726	-	RAMPAGE_only	2	2	7	0.390527	2.807355	chr12	9877698	9877842	LINE|L2|L2a	+	chr12	9873728	9884474	STRG.102959.6	-	9873728	9884474	1.000000
suprapubic_skin_female_adult_53_years	chr9	90997678	90997697	90997678	+	High_confidence	3	3	10	0.557896	3.169925	chr9	90997473	90998100	DNA|TcMar-Tigger|MER6A	+	chr9	90997053	91001871	AL355607.2|ENST00000563268.1	+	90997053,90997595,91000769	90997124,90997817,91001871	0.500000
suprapubic_skin_female_adult_53_years	chr7	128648805	128648837	128648836	+	RAMPAGE_only	3	4	18	1.004213	3.292770	chr7	128648764	128648951	SINE|Alu|AluJb	-	chr7	128641240	128660998	LINC01000|NR_024368.1	+	128641240,128642216,128648791,128651037,128651188	128641379,128642281,128648982,128651095,128660998	0.500000
suprapubic_skin_female_adult_53_years	chr1	174817532	174817559	174817532	+	RAMPAGE_only	2	2	11	0.613686	3.321928	chr1	174817300	174818587	LINE|L2|L2c	-	chr1	174799931	174995308	RABGAP1L|ENST00000489615.5	+	174799931,174811831,174957456,174969276,174976077,174978806,174982833,174988640,174989848	174800500,174811960,174957549,174969387,174976182,174978890,174982905,174988838,174995308	0.636364
suprapubic_skin_female_adult_53_years	chr19	46164337	46164363	46164337	-	RAMPAGE_only	6	7	16	0.892634	3.750000	chr19	46161437	46164532	LINE|L1|L1PA12	-	chr19	46163892	46180647	AC006262.2|ENST00000599127.1	-	46163892,46164577,46173933,46179485,46180604	46164216,46164651,46174052,46179537,46180647	0.812500
suprapubic_skin_female_adult_53_years	chr15	78175021	78175057	78175021	-	High_confidence	3	3	10	0.557896	2.725481	chr15	78174860	78175104	SINE|MIR|MIR	-	chr15	78173592	78174812	ACSBG1|ENST00000560183.1	-	78173592,78174384	78173839,78174812	0.500000
suprapubic_skin_female_adult_53_years	chr10	12553302	12553303	12553302	+	RAMPAGE_only	4	4	6	0.334738	2.584963	chr10	12553322	12553407	DNA|hAT-Ac|OldhAT1	+	chr10	12349732	12826143	CAMK1D|ENST00000378845.5	+	12349732,12553224,12666735,12760947,12769672,12791157,12814194,12816249,12824464,12825572	12349910,12553356,12666810,12761086,12769799,12791233,12814307,12816328,12824552,12826143	1.000000
suprapubic_skin_female_adult_53_years	chr18	46087105	46087181	46087118	-	High_confidence	5	5	45	2.510532	4.805911	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.733333
suprapubic_skin_female_adult_53_years	chr15	42146820	42146822	42146820	-	High_confidence	8	12	16	0.892634	3.625000	chr15	42146813	42146908	DNA|hAT-Charlie|MER5B	+	chr15	42141208	42147733	STRG.120304.10	-	42141208,42142527,42143977,42144449,42145574,42145765,42147625	42142204,42142714,42144144,42144644,42145682,42147346,42147733	1.000000
suprapubic_skin_female_adult_53_years	chr2	61502701	61502704	61502703	-	High_confidence	4	6	9	0.502106	3.000000	chr2	61502467	61502758	SINE|Alu|AluSx1	+	chr2	61499716	61502608	XPO1|ENST00000489954.1	-	61499716,61501995,61502248	61499894,61502040,61502608	0.555556
suprapubic_skin_female_adult_53_years	chr20	57987760	57987811	57987782	-	High_confidence	3	3	16	0.892634	3.875000	chr20	57987496	57988083	DNA|TcMar-Tigger|Tigger9b	-	chr20	57985803	57987783	STRG.146029.1	-	57985803,57987700	57987139,57987783	0.875000
suprapubic_skin_female_adult_53_years	chr21	29077476	29077495	29077486	+	High_confidence	6	6	16	0.892634	3.589898	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.687500
suprapubic_skin_female_adult_53_years	chr4	88595564	88595589	88595564	+	RAMPAGE_only	2	2	15	0.836844	3.589898	chr4	88595552	88595664	SINE|MIR|MIR3	+	chr4	88593377	88653088	HERC3|ENST00000452979.5	+	88593377,88595556,88605794,88649839,88652011,88652868	88593494,88595614,88606049,88649999,88652088,88653088	1.000000
suprapubic_skin_female_adult_53_years	chr11	35207901	35207969	35207968	+	RAMPAGE_only	9	12	40	2.231584	4.534184	chr11	35207888	35207973	DNA|TcMar-Tigger|MamRep137	+	chr11	35201678	35211401	CD44|ENST00000528672.1	+	35201678,35204511,35208104,35209964,35211245	35201787,35204640,35208206,35210054,35211401	0.650000
suprapubic_skin_female_adult_53_years	chr9	73167020	73167030	73167020	+	RAMPAGE_only	5	5	10	0.557896	3.169925	chr9	73166964	73167125	LINE|L1|L1PA16	-	chr9	73160262	73167869	STRG.83808.8	+	73160262,73162781,73163475,73165115,73166096	73160893,73162861,73163532,73165209,73167869	0.800000
suprapubic_skin_female_adult_53_years	chr16	23278251	23278274	23278251	+	RAMPAGE_only	4	4	9	0.502106	2.641604	chr16	23278204	23278287	LINE|L1|L1MB7	+	chr16	23302269	23381299	SCNN1B|NM_000336.2	+	23302269,23348591,23352800,23355298,23367855,23371298,23371775,23375737,23377164,23377328,23378705,23380093,23380420	23302437,23348910,23353074,23355489,23367959,23371462,23371883,23375855,23377240,23377386,23378767,23380169,23381299	0.555556
suprapubic_skin_female_adult_53_years	chr11	57814180	57814184	57814180	+	High_confidence	2	2	7	0.390527	2.521641	chr11	57814032	57814187	SINE|Alu|AluJr4	+	chr11	57813916	57815481	CTNND1|ENST00000525821.1	+	57813916,57815393	57814373,57815481	0.857143
suprapubic_skin_female_adult_53_years	chr4	79492558	79492586	79492570	+	High_confidence	2	3	8	0.446317	2.521641	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.625000
suprapubic_skin_female_adult_53_years	chr9	122383375	122383426	122383404	+	RAMPAGE_only	7	7	20	1.115792	3.826875	chr9	122383228	122383447	LINE|L2|L2b	-	chr9	122375321	122395703	PTGS1|NM_001271165.1	+	122375321,122377898,122378432,122378774,122381370,122381663,122383508,122386445,122390197,122392188	122375444,122378015,122378573,122378918,122381552,122381747,122383755,122386732,122390345,122395703	0.900000
suprapubic_skin_female_adult_53_years	chr3	98754257	98754287	98754257	+	RAMPAGE_only	8	8	20	1.115792	3.826875	chr3	98753803	98755032	DNA|TcMar-Tigger|Tigger1	+	chr3	98732713	98766320	STRG.33734.14	+	98732713,98748676	98748594,98766320	0.950000
suprapubic_skin_female_adult_53_years	chr19	1880086	1880103	1880086	-	High_confidence	5	5	16	0.892634	3.577820	chr19	1880079	1880146	DNA|hAT-Ac|OldhAT1	+	chr19	1877203	1880017	ABHD17A|ENST00000592757.1	-	1877203,1877507,1878663,1879920	1877425,1877687,1878904,1880017	0.687500
suprapubic_skin_female_adult_53_years	chr4	2935305	2935318	2935317	+	High_confidence	3	3	6	0.334738	2.584963	chr4	2935271	2935512	LTR|ERVL|MLT2F	-	chr4	2935545	2942051	NOP14-AS1|ENST00000512712.2	+	2935545,2937751,2940301	2936890,2937844,2942051	1.000000
suprapubic_skin_female_adult_53_years	chr1	153249896	153249947	153249896	-	High_confidence	17	17	38	2.120005	4.836592	chr1	153249798	153250121	LINE|L2|L2c	-	chr1	153248301	153250342	STRG.9242.1	-	153248301	153250342	0.947368
suprapubic_skin_female_adult_53_years	chr11	68756092	68756093	68756092	-	RAMPAGE_only	29	29	37	2.064215	4.062305	chr11	68755831	68756133	SINE|Alu|AluSq	+	chr11	68754888	68808946	STRG.98490.3	-	68754888,68759568,68760224,68761534,68762626,68773264,68775315,68780639,68781770,68784814,68793314,68794803,68796855,68803999,68807466	68757730,68759661,68760338,68761687,68762761,68773429,68775432,68780745,68781959,68785010,68793402,68794911,68799355,68804101,68808946	0.864865
suprapubic_skin_female_adult_53_years	chr9	18702070	18702071	18702070	-	High_confidence	10	10	12	0.669475	3.584963	chr9	18701896	18702263	LTR|ERVL-MaLR|THE1B	-	chr9	18657326	18702058	STRG.81733.1	-	18657326,18670172,18694347,18701979	18657739,18670287,18694419,18702058	0.833333
suprapubic_skin_female_adult_53_years	chr7	128638793	128638824	128638793	+	RAMPAGE_only	3	3	14	0.781054	3.546594	chr7	128638760	128639054	SINE|Alu|AluJr	-	chr7	128625515	128652334	STRG.72208.4	+	128625515,128626294,128629393,128631679,128638773,128641596,128648791,128651037,128651188	128625855,128626530,128629458,128631869,128641379,128642281,128648982,128651095,128652334	0.857143
suprapubic_skin_female_adult_53_years	chr15	41997311	41997346	41997338	-	High_confidence	16	16	104	5.802118	5.623532	chr15	41997306	41997526	SINE|MIR|MIRb	+	chr15	41981583	41997522	PLA2G4E|ENST00000547930.5	-	41981583,41984435,41985838,41987171,41988048,41989414,41990120,41992736,41995359,41997123	41983974,41984619,41986005,41987375,41988156,41989552,41990235,41992959,41995496,41997522	0.519231
suprapubic_skin_female_adult_53_years	chr8	27431312	27431345	27431338	+	High_confidence	5	5	20	1.115792	4.121928	chr8	27431334	27431403	LINE|RTE-BovB|MamRTE1	+	chr8	27430898	27452559	PTK2B|ENST00000397497.8	+	27430898,27432259,27433434,27434092,27434512,27435742,27436250,27437121,27437395,27437764,27439030,27439308,27440236,27442874,27444205,27450748,27451042,27451484	27431472,27432361,27433552,27434132,27434559,27435793,27436348,27437206,27437496,27437880,27439131,27439398,27440441,27442983,27444271,27450895,27451078,27452559	0.900000
suprapubic_skin_female_adult_53_years	chr14	24313820	24313851	24313850	+	High_confidence	2	2	7	0.390527	2.521641	chr14	24313577	24313885	SINE|Alu|AluSz	-	chr14	24313310	24318036	LTB4R|ENST00000396789.4	+	24313310,24315636	24315020,24318036	1.000000
suprapubic_skin_female_adult_53_years	chr19	46180731	46180739	46180738	-	High_confidence	4	5	11	0.613686	3.121928	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46163892	46180909	STRG.141676.3	-	46163892,46173933,46179485,46180604,46180800	46173520,46174052,46179537,46180689,46180909	0.545455
suprapubic_skin_female_adult_53_years	chr8	27312172	27312191	27312172	+	High_confidence	2	2	7	0.390527	2.521641	chr8	27312215	27312594	LTR|ERVL|LTR40b	+	chr8	27311481	27459391	PTK2B|NM_173174.2	+	27311481,27312303,27313204,27322401,27323266,27325563,27397547,27419894,27420656,27422303,27430092,27430363,27430875,27431397,27432259,27433434,27434092,27434512,27435742,27436250,27437121,27437395,27437764,27439030,27439308,27440236,27442874,27444205,27445793,27450748,27451042,27451484,27453113,27454153,27454530,27458293	27311709,27312387,27313287,27322499,27323426,27325681,27397788,27420073,27420744,27422383,27430155,27430418,27431016,27431472,27432361,27433552,27434132,27434559,27435793,27436348,27437206,27437496,27437880,27439131,27439398,27440441,27442983,27444271,27445919,27450895,27451078,27451509,27453160,27454291,27454611,27459391	0.571429
suprapubic_skin_female_adult_53_years	chr19	15681694	15681747	15681732	+	High_confidence	5	7	22	1.227371	3.584184	chr19	15681355	15681801	LTR|ERVL|LTR40c	-	chr19	15681500	15697143	CYP4F12|ENST00000546608.1	+	15681500,15683492,15685067,15695935,15696160,15696907	15682514,15684882,15685197,15696069,15696512,15697143	0.909091
suprapubic_skin_female_adult_53_years	chr11	45860638	45860672	45860652	+	High_confidence	2	2	10	0.557896	2.725481	chr11	45860581	45860685	SINE|MIR|MIR1_Amn	+	chr11	45861161	45869671	CRY2|ENST00000495237.1	+	45861161,45867611,45869505	45862148,45867752,45869671	0.600000
suprapubic_skin_female_adult_53_years	chr19	15256182	15256254	15256247	-	RAMPAGE_only	17	20	166	9.261073	5.797812	chr19	15256082	15256220	LINE|L1|L1M5	-	chr19	15235569	15272981	STRG.138973.2	-	15235569,15238742,15239058,15239391,15239909,15242899,15244230,15255296,15256063,15256963,15263419,15264403,15265353,15267415,15268904,15272814	15238445,15238980,15239264,15239821,15240022,15243487,15254262,15255592,15256263,15257173,15263548,15264766,15265643,15267551,15269042,15272981	0.993976
suprapubic_skin_female_adult_53_years	chr5	136048042	136048043	136048042	+	RAMPAGE_only	5	6	8	0.446317	2.750000	chr5	136048003	136048078	LINE|CR1|L3b	+	chr5	136045744	136055189	TGFBI|ENST00000515433.1	+	136045744,136052906,136053942,136054715	136049580,136053119,136054080,136055189	1.000000
suprapubic_skin_female_adult_53_years	chr1	17637780	17637796	17637795	+	RAMPAGE_only	3	3	7	0.390527	2.807355	chr1	17637500	17637803	SINE|Alu|AluY	-	chr1	17634677	17697649	STRG.804.9	+	17634677,17637887,17638561,17639237,17639831,17640201,17648553,17654635,17655878,17656553,17664446,17687572,17695157,17696847	17635016,17638003,17638689,17639313,17639981,17640302,17648675,17654722,17656102,17656708,17664595,17687747,17695280,17697649	0.571429
suprapubic_skin_female_adult_53_years	chr16	89894872	89894896	89894872	+	High_confidence	3	3	9	0.502106	2.750000	chr16	89894663	89894944	SINE|Alu|AluSz	-	chr16	89894955	89900793	TCF25|ENST00000562184.5	+	89894955,89895989,89898556,89898766,89900634	89895137,89896083,89898649,89898872,89900793	0.666667
suprapubic_skin_female_adult_53_years	chr2	29175333	29175402	29175333	+	High_confidence	16	22	97	5.411591	5.914044	chr2	29175307	29175605	LINE|CR1|L3	+	chr2	29175362	29181758	CLIP4|ENST00000481628.1	+	29175362,29181571	29175600,29181758	0.865979
suprapubic_skin_female_adult_53_years	chr7	30563866	30563892	30563891	-	High_confidence	2	3	8	0.446317	2.521641	chr7	30563654	30564076	LTR|ERVL-MaLR|MLT1C	-	chr7	30548356	30564617	GARS-DT|ENST00000355837.4	-	30548356,30563722	30562128,30564617	0.750000
suprapubic_skin_female_adult_53_years	chr20	33624688	33624717	33624688	+	RAMPAGE_only	7	7	25	1.394740	3.859471	chr20	33624662	33624719	LINE|L2|L2b	+	chr20	33622848	33645541	STRG.144739.6	+	33622848,33628349,33629718,33636639,33640340,33644346	33625017,33628435,33629914,33636708,33640531,33645541	0.920000
suprapubic_skin_female_adult_53_years	chr10	25813112	25813129	25813127	+	RAMPAGE_only	2	3	7	0.390527	2.584963	chr10	25812863	25813152	SINE|Alu|AluJo	-	chr10	25808647	25912616	STRG.89320.1	+	25808647,25813038,25852532,25890180,25901269,25907157	25808690,25813223,25852690,25890309,25906206,25912616	0.714286
suprapubic_skin_female_adult_53_years	chr2	39757453	39757454	39757453	-	High_confidence	7	7	7	0.390527	2.521641	chr2	39757368	39757486	LINE|RTE-X|L4_C_Mam	-	chr2	39736682	39757552	STRG.16996.1	-	39736682,39744369,39755294,39755888,39757247	39737059,39744478,39755409,39755960,39757552	0.571429
suprapubic_skin_female_adult_53_years	chr12	52695237	52695307	52695237	-	High_confidence	8	8	63	3.514745	4.536712	chr12	52695129	52695282	SINE|MIR|MIRc	+	chr12	52692827	52695352	KRT77|ENST00000550823.1	-	52692827,52694625	52692880,52695352	0.952381
suprapubic_skin_female_adult_53_years	chr16	2759886	2759976	2759975	+	High_confidence	22	36	87	4.853695	5.272352	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.781609
suprapubic_skin_female_adult_53_years	chr1	12356414	12356463	12356414	+	High_confidence	28	33	98	5.467380	4.179429	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12356350	12510346	VPS13D|ENST00000646411.1	+	12356350,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12356524,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	0.816327
suprapubic_skin_female_adult_53_years	chr1	179273212	179273213	179273212	+	RAMPAGE_only	14	14	18	1.004213	3.947703	chr1	179273172	179273276	LINE|L2|L2c	-	chr1	179293713	179358680	SOAT1|NM_003101.5	+	179293713,179302676,179323436,179335505,179337836,179339437,179341027,179342113,179342861,179343589,179344946,179347599,179348843,179350295,179351316,179353584	179293936,179302802,179323495,179335657,179337896,179339545,179341310,179342192,179342943,179343635,179345076,179347697,179348942,179350431,179351462,179358680	0.944444
suprapubic_skin_female_adult_53_years	chr1	109264524	109264587	109264586	+	High_confidence	6	7	29	1.617898	4.142295	chr1	109264632	109264745	SINE|MIR|MIR3	+	chr1	109265115	109275607	STRG.7695.3	+	109265115,109265734,109266104,109267547,109267850,109268580,109268879,109269109,109269423,109269693,109269932,109270926,109271216,109271385,109271599,109272277,109272639,109272832,109273165,109273435,109274415	109265311,109265918,109266206,109267642,109268060,109268764,109269008,109269290,109269591,109269820,109270600,109271039,109271296,109271512,109271722,109272405,109272728,109273027,109273336,109273670,109275607	0.551724
suprapubic_skin_female_adult_53_years	chr14	51589996	51590007	51589996	+	RAMPAGE_only	18	21	38	2.120005	3.850949	chr14	51589786	51590085	SINE|Alu|AluSq	+	chr14	51651857	51730727	FRMD6|NM_001267046.1	+	51651857,51689690,51698141,51701055,51702511,51704748,51708077,51711530,51712482,51715324,51720054,51721948,51725778,51727744	51651996,51689935,51698232,51701159,51702588,51704935,51708233,51711596,51712551,51715499,51720390,51722080,51725870,51730727	0.657895
suprapubic_skin_female_adult_53_years	chr14	74900977	74901000	74900977	+	RAMPAGE_only	2	2	8	0.446317	2.750000	chr14	74900724	74901000	SINE|Alu|AluJr	-	chr14	74881924	74903745	STRG.116670.2	+	74881924,74889094,74889274,74889896,74891055,74892833,74893347,74894311,74898368,74899922,74900288,74901065,74902195	74885634,74889147,74889349,74889952,74891167,74892986,74893424,74894409,74898499,74899996,74900372,74901233,74903745	0.625000
suprapubic_skin_female_adult_53_years	chr20	62286245	62286266	62286265	+	RAMPAGE_only	2	3	8	0.446317	2.521641	chr20	62286166	62286468	SINE|Alu|AluSx1	+	chr20	62273308	62294865	STRG.146393.9	+	62273308,62279156,62281057,62281789,62284045,62285535,62286582,62289206,62291702,62293784	62273406,62279339,62281165,62281879,62284169,62286488,62286711,62289330,62291793,62294865	0.875000
suprapubic_skin_female_adult_53_years	chrX	19349983	19350041	19349990	+	RAMPAGE_only	3	3	19	1.060002	3.614369	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19343932	19361685	PDHA1|ENST00000422285.6	+	19343932,19349311,19349936,19351280,19353081,19354490,19355348,19355685,19357651,19358915,19359488	19344094,19349371,19350110,19351407,19353173,19354583,19355504,19355757,19357719,19359024,19361685	0.631579
suprapubic_skin_female_adult_53_years	chr10	110876129	110876186	110876139	+	RAMPAGE_only	4	4	28	1.562109	4.085055	chr10	110876086	110876308	SINE|Alu|AluJb	-	chr10	110871954	110885339	STRG.93698.10	+	110871954,110872192,110883002,110885252	110872143,110881535,110883097,110885339	0.928571
suprapubic_skin_female_adult_53_years	chr18	9588152	9588181	9588180	-	RAMPAGE_only	3	3	8	0.446317	2.750000	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9577063	9595061	PPP4R1|ENST00000580583.5	-	9577063,9584514,9584720,9588088,9588710,9593767,9595017	9577191,9584580,9584828,9588235,9588853,9593874,9595061	0.500000
suprapubic_skin_female_adult_53_years	chr17	69248784	69248800	69248784	-	High_confidence	3	3	8	0.446317	2.521641	chr17	69248697	69249025	SINE|Alu|AluJb	-	chr17	69247375	69249141	ABCA5|ENST00000586601.1	-	69247375,69248261	69247644,69249141	0.875000
suprapubic_skin_female_adult_53_years	chr9	130079507	130079561	130079560	+	RAMPAGE_only	3	3	14	0.781054	3.392747	chr9	130079384	130079578	SINE|MIR|MIRb	+	chr9	130053924	130136123	GPR107|ENST00000610997.1	+	130053924,130075635,130076411,130077298,130079629,130083564,130086419,130090875,130092247,130099456,130100628,130101105,130104419,130107495,130110369,130114572,130124914,130127482,130128639,130135024	130054073,130075749,130076462,130077378,130079769,130083602,130086476,130090983,130092381,130099532,130100702,130101223,130104550,130107539,130110422,130114663,130124964,130127566,130128761,130136123	0.928571
suprapubic_skin_female_adult_53_years	chr15	41837684	41837718	41837717	+	High_confidence	2	2	8	0.446317	2.807355	chr15	41837592	41837887	SINE|Alu|AluY	-	chr15	41837774	41848147	PLA2G4B|ENST00000452633.5	+	41837774,41838746,41840157,41840523,41840773,41841054,41841230,41841516,41841818,41842192,41842553,41843675,41844470,41844847,41845202,41845637,41845942,41846202,41846668,41847336,41847648	41837959,41838922,41840230,41840660,41840905,41841095,41841273,41841571,41841949,41842276,41842591,41843811,41844607,41845070,41845320,41845775,41846047,41846382,41846835,41847523,41848147	0.500000
suprapubic_skin_female_adult_53_years	chr10	103605822	103605825	103605823	-	RAMPAGE_only	8	15	21	1.171582	4.037401	chr10	103605815	103605885	LINE|CR1|L3	+	chr10	103599519	103693623	SH3PXD2A|ENST00000315994.6	-	103599519,103605797,103611580,103612852,103617196,103627088,103660982,103668607,103673437,103693027,103693333,103693599	103603789,103605917,103611630,103613190,103617314,103627202,103661114,103668652,103673556,103693056,103693478,103693623	0.761905
suprapubic_skin_female_adult_53_years	chr12	53467737	53467750	53467749	+	High_confidence	6	7	15	0.836844	3.373557	chr12	53467721	53467786	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	1.000000
suprapubic_skin_female_adult_53_years	chr11	47486720	47486781	47486749	-	High_confidence	2	2	14	0.781054	3.546594	chr11	47486415	47486707	SINE|Alu|AluSz6	-	chr11	47477295	47486799	CELF1|ENST00000422993.2	-	47477295,47478876,47482694,47484388,47486749	47477425,47478952,47482856,47484523,47486799	0.714286
suprapubic_skin_female_adult_53_years	chr8	129786061	129786154	129786106	-	High_confidence	3	4	23	1.283161	3.749903	chr8	129786052	129786345	SINE|Alu|AluSg7	+	chr8	129748195	129786888	GSDMC|ENST00000276708.8	-	129748195,129749451,129749989,129750430,129751541,129751861,129752105,129752697,129760544,129762625,129765627,129776101,129777367,129786010	129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752820,129760589,129762731,129765793,129776285,129777591,129786888	0.869565
suprapubic_skin_female_adult_53_years	chr14	24313653	24313668	24313655	+	High_confidence	10	17	27	1.506319	4.257756	chr14	24313577	24313885	SINE|Alu|AluSz	-	chr14	24313310	24318036	LTB4R|ENST00000396789.4	+	24313310,24315636	24315020,24318036	0.962963
suprapubic_skin_female_adult_53_years	chr2	24205412	24205413	24205412	-	High_confidence	7	7	9	0.502106	2.750000	chr2	24205380	24205748	LINE|L2|L2c	+	chr2	24202863	24205693	ITSN2|ENST00000478720.1	-	24202863,24205213	24204418,24205693	0.888889
suprapubic_skin_female_adult_53_years	chr1	116390239	116390392	116390289	+	RAMPAGE_only	25	28	227	12.664238	6.008462	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.951542
suprapubic_skin_female_adult_53_years	chr12	120071518	120071558	120071518	+	High_confidence	4	4	14	0.781054	3.521641	chr12	120071441	120071576	LINE|L1|L1MC5	-	chr12	120071702	120093394	BICDL1|ENST00000548673.5	+	120071702,120072510,120074442,120080886,120089950,120092999	120071801,120072729,120074586,120081017,120090071,120093394	0.785714
suprapubic_skin_female_adult_53_years	chr2	86482577	86482678	86482577	+	RAMPAGE_only	19	20	81	4.518957	5.190111	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.654321
suprapubic_skin_female_adult_53_years	chr16	72627719	72627740	72627719	-	RAMPAGE_only	4	4	16	0.892634	3.906891	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.562500
suprapubic_skin_female_adult_53_years	chr13	19243998	19244013	19244012	-	High_confidence	5	5	15	0.836844	3.506891	chr13	19243448	19245701	LINE|L1|L1PB1	+	chr13	19243670	19243999	STRG.109426.1	-	19243670	19243999	0.800000
suprapubic_skin_female_adult_53_years	chr13	98988460	98988461	98988460	-	RAMPAGE_only	13	13	18	1.004213	3.947703	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98793486	98978084	DOCK9|NM_001130048.1	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,98977783	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,98978084	0.833333
suprapubic_skin_female_adult_53_years	chr16	2760017	2760062	2760017	+	High_confidence	2	3	14	0.781054	2.777363	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	0.928571
suprapubic_skin_female_adult_53_years	chr16	8904664	8904665	8904664	-	High_confidence	4	4	7	0.390527	2.807355	chr16	8904661	8904986	SINE|Alu|AluY	+	chr16	8901932	8904533	USP7|ENST00000570256.5	-	8901932,8902380,8903267,8904434	8902187,8902482,8903402,8904533	0.571429
suprapubic_skin_female_adult_53_years	chr16	71922371	71922419	71922411	+	High_confidence	4	7	16	0.892634	3.500000	chr16	71922240	71922438	LTR|ERVL|LTR16A	+	chr16	71922626	71928049	IST1|ENST00000536027.1	+	71922626,71923287,71924090,71924768,71927613	71922680,71923380,71924281,71924817,71928049	0.625000
suprapubic_skin_female_adult_53_years	chr20	3869064	3869107	3869106	+	RAMPAGE_only	3	3	10	0.557896	2.846439	chr20	3869006	3869168	SINE|Alu|AluJr4	-	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.900000
suprapubic_skin_female_adult_53_years	chr9	128331971	128331997	128331971	+	RAMPAGE_only	6	6	17	0.948423	3.155639	chr9	128331719	128332029	SINE|Alu|AluSx	-	chr9	128330411	128334068	COQ4|ENST00000461102.1	+	128330411,128333473	128332943,128334068	0.941176
suprapubic_skin_female_adult_53_years	chr14	74288853	74288866	74288853	-	High_confidence	3	4	8	0.446317	3.000000	chr14	74288831	74289141	SINE|Alu|AluSg	+	chr14	74286283	74288768	ABCD4|ENST00000555904.1	-	74286283,74286700,74287809,74288206,74288715	74286566,74286816,74287886,74288259,74288768	0.625000
suprapubic_skin_female_adult_53_years	chr12	7115144	7115167	7115144	+	RAMPAGE_only	3	3	11	0.613686	2.921928	chr12	7114990	7115194	LINE|L2|L2b	+	chr12	7108570	7135518	STRG.102730.3	+	7108570,7110297,7111024,7112006,7115129,7115385,7118898,7119499,7120505,7127587,7129094,7133023,7133572,7135326	7108947,7110572,7111606,7112064,7115219,7118677,7118944,7119553,7120625,7129064,7130712,7133146,7133768,7135518	0.636364
suprapubic_skin_female_adult_53_years	chr8	32927960	32927977	32927976	+	RAMPAGE_only	5	5	13	0.725265	3.584963	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.769231
suprapubic_skin_female_adult_53_years	chr22	37755631	37755658	37755657	+	High_confidence	3	3	8	0.446317	2.750000	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37754881	37758135	STRG.150629.8	+	37754881,37755100,37757612	37754984,37755659,37758135	1.000000
suprapubic_skin_female_adult_53_years	chr16	89555697	89555720	89555718	+	RAMPAGE_only	4	6	17	0.948423	3.875000	chr16	89555512	89555750	LINE|L1|L1MC3	-	chr16	89554485	89557488	SPG7|ENST00000565891.2	+	89554485,89555958,89556886	89554563,89556085,89557488	0.529412
suprapubic_skin_female_adult_53_years	chr17	69248674	69248759	69248750	-	High_confidence	23	26	76	4.240009	4.751235	chr17	69248697	69249025	SINE|Alu|AluJb	-	chr17	69247375	69249141	ABCA5|ENST00000586601.1	-	69247375,69248261	69247644,69249141	1.000000
suprapubic_skin_female_adult_53_years	chr11	46863007	46863069	46863068	-	High_confidence	5	6	20	1.115792	3.997670	chr11	46862823	46863368	LTR|ERVL-MaLR|MLT1F2	+	chr11	46856869	46862933	LRP4|ENST00000529604.1	-	46856869,46862605	46859315,46862933	0.950000
suprapubic_skin_female_adult_53_years	chr11	33711384	33711385	33711384	-	RAMPAGE_only	7	7	8	0.446317	2.521641	chr11	33711302	33711405	LINE|L1|L1MB7	+	chr11	33702691	33710283	AL049629.2|ENST00000533181.1	-	33702691,33709905	33702737,33710283	0.875000
suprapubic_skin_female_adult_53_years	chr19	50249805	50249823	50249822	+	RAMPAGE_only	15	15	34	1.896846	3.917626	chr19	50249856	50250043	SINE|MIR|MIR	+	chr19	50210365	50309790	MYH14|ENST00000596571.5	+	50210365,50217614,50223082,50223246,50225584,50226902,50230524,50231929,50244241,50247003,50248986,50249649,50250514,50252638,50257298,50259143,50260645,50261474,50263311,50266876,50268160,50271408,50271848,50272559,50275990,50276756,50278082,50280036,50280230,50281593,50286481,50289435,50290886,50292260,50293232,50293563,50301660,50307048,50309004,50309639	50210770,50217771,50223110,50223349,50225677,50226966,50230623,50232070,50244337,50247122,50249139,50249823,50250688,50252753,50257486,50259265,50260715,50261635,50263420,50267008,50268367,50271546,50271972,50272731,50276203,50276901,50278289,50280141,50280383,50281842,50286694,50289648,50291048,50292389,50293321,50293687,50301869,50307157,50309177,50309790	0.970588
suprapubic_skin_female_adult_53_years	chr5	138535228	138535258	138535248	-	RAMPAGE_only	3	3	11	0.613686	2.846439	chr5	138534961	138535249	SINE|Alu|AluSx	-	chr5	138512276	138543151	STRG.54100.5	-	138512276,138513567,138517560,138518691,138529554,138543096	138512954,138513706,138517700,138518867,138542936,138543151	0.818182
suprapubic_skin_female_adult_53_years	chr19	10564929	10564971	10564937	-	RAMPAGE_only	6	7	22	1.227371	4.121928	chr19	10564755	10564893	SINE|MIR|MIRb	-	chr19	10553575	10565971	KRI1|ENST00000478863.5	-	10553575,10555086,10555284,10557551,10557971,10558163,10559358,10559612,10559809,10560311,10561002,10561168,10561666,10561790,10562728,10564928,10565716,10565905	10554281,10555185,10555349,10557895,10558060,10558239,10559529,10559708,10559936,10560448,10561080,10561265,10561716,10561845,10562837,10565034,10565790,10565971	0.909091
suprapubic_skin_male_adult_37_years	chr14	50756740	50756742	50756741	-	RAMPAGE_only	5	7	11	0.919281	2.845351	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
suprapubic_skin_male_adult_37_years	chr10	65570315	65570350	65570349	+	High_confidence	7	8	12	1.002852	3.418296	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570342	65615757	STRG.41271.1	+	65570342,65571424,65572934,65585484,65615635	65570759,65571579,65573056,65585802,65615757	1.000000
suprapubic_skin_male_adult_37_years	chr17	41653449	41653450	41653449	-	High_confidence	8	8	12	1.002852	2.732159	chr17	41653332	41653498	SINE|Alu|AluJr	+	chr17	41647284	41654208	STRG.60661.1	-	41647284,41653190	41648914,41654208	0.916667
suprapubic_skin_male_adult_37_years	chr11	57793980	57794070	57794000	+	RAMPAGE_only	3	3	23	1.922134	3.757925	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.521739
suprapubic_skin_male_adult_37_years	chr12	3104074	3104133	3104132	+	RAMPAGE_only	10	10	31	2.590702	4.456565	chr12	3103785	3104309	LINE|L2|L2a	-	chr12	3102748	3286558	STRG.46749.4	+	3102748,3201176,3278420,3278991,3280381,3281197,3281733,3283044	3104311,3201256,3278612,3279066,3280483,3281329,3281817,3286558	0.806452
suprapubic_skin_male_adult_37_years	chr19	5680240	5680249	5680248	-	High_confidence	5	5	13	1.086423	3.418296	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.846154
suprapubic_skin_male_adult_37_years	chr2	72088483	72088488	72088483	-	High_confidence	83	92	215	17.967770	5.164168	chr2	72088481	72089105	LTR|ERV1|MER41B	+	chr2	72083990	72088454	STRG.9092.2	-	72083990,72087723	72084886,72088454	0.967442
suprapubic_skin_male_adult_37_years	chr16	70561200	70561226	70561225	+	High_confidence	5	5	11	0.919281	2.521928	chr16	70561012	70561320	SINE|Alu|AluSx	-	chr16	70561348	70567541	SF3B3|ENST00000563739.5	+	70561348,70563875,70565064,70565367,70567410	70561784,70564050,70565270,70565524,70567541	0.909091
suprapubic_skin_male_adult_37_years	chr20	23659718	23659719	23659718	-	RAMPAGE_only	6	8	8	0.668568	3.000000	chr20	23659416	23659928	LTR|ERVL|MLT2A2	-	chr20	23633656	23638473	CST3|ENST00000398409.1	-	23633656,23635253,23637619,23638411	23633999,23635367,23637932,23638473	0.625000
suprapubic_skin_male_adult_37_years	chr17	41653373	41653392	41653373	-	High_confidence	4	4	18	1.504278	3.725481	chr17	41653332	41653498	SINE|Alu|AluJr	+	chr17	41647284	41654208	STRG.60661.1	-	41647284,41653190	41648914,41654208	0.722222
suprapubic_skin_male_adult_37_years	chr11	64807612	64807657	64807612	-	RAMPAGE_only	6	6	21	1.754991	3.630413	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64804374	64806368	MEN1|ENST00000478548.1	-	64804374,64805033,64805634	64804816,64805198,64806368	0.761905
suprapubic_skin_male_adult_37_years	chr9	108639958	108639966	108639958	-	High_confidence	7	7	17	1.420707	3.616875	chr9	108639757	108640012	LTR|ERVL-MaLR|MLT1L	-	chr9	108637213	108639809	STRG.39066.1	-	108637213	108639809	0.647059
suprapubic_skin_male_adult_37_years	chr12	12927733	12927751	12927733	+	High_confidence	33	34	88	7.354250	5.976980	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.590909
suprapubic_skin_male_adult_37_years	chr19	12800915	12801038	12800915	-	High_confidence	5	5	41	3.426412	4.218469	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.902439
suprapubic_skin_male_adult_37_years	chr5	109383499	109383509	109383508	-	High_confidence	3	3	7	0.584997	2.584963	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.857143
suprapubic_skin_male_adult_37_years	chr10	102779851	102779855	102779854	+	RAMPAGE_only	9	9	17	1.420707	3.337175	chr10	102779736	102779930	LINE|L2|L2c	-	chr10	102776248	102816267	WBP1L|ENST00000369889.5	+	102776248,102797992,102809892,102812594	102776417,102798095,102810054,102816267	0.941176
suprapubic_skin_male_adult_37_years	chr11	18706991	18707033	18707032	-	High_confidence	8	9	28	2.339989	4.107011	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18704311	18706923	STRG.43987.1	-	18704311,18705816,18706913	18704538,18706146,18706923	0.785714
suprapubic_skin_male_adult_37_years	chrX	19647778	19647786	19647784	-	High_confidence	145	164	384	32.091273	6.771113	chrX	19647773	19647939	DNA|hAT-Charlie|MER5A	+	chrX	19534006	19647785	STRG.70843.3	-	19534006,19537716,19541924,19545921,19549973,19569102,19588642,19592066,19594948,19607937,19631863,19645399,19647477	19536458,19537780,19542193,19546050,19550083,19569188,19588802,19592147,19595000,19608045,19631958,19645475,19647785	0.953125
suprapubic_skin_male_adult_37_years	chr2	37384263	37384275	37384274	-	High_confidence	11	15	34	2.841415	4.620152	chr2	37383330	37385519	LTR|ERV1|HERVH-int	-	chr2	37375274	37384421	STRG.7810.1	-	37375274,37384167	37376302,37384421	0.558824
suprapubic_skin_male_adult_37_years	chr7	132590622	132590623	132590622	-	RAMPAGE_only	25	25	35	2.924986	3.829004	chr7	132590316	132590835	LTR|ERVL|MLT2A2	-	chr7	132123340	132577301	PLXNA4|ENST00000359827.7	-	132123340,132133048,132140598,132145118,132146509,132147899,132148542,132159472,132164141,132165133,132168303,132174777,132179686,132180585,132181380,132182096,132185298,132187470,132194061,132198484,132202645,132203322,132210942,132223526,132226160,132227450,132228345,132241065,132298090,132489291,132507505,132576421	132130574,132133199,132140811,132145288,132146700,132147999,132148646,132159632,132164288,132165200,132168572,132174920,132179921,132180732,132181620,132182190,132185463,132187607,132194179,132198636,132202836,132203419,132211143,132223641,132226260,132227604,132228469,132241166,132298222,132489474,132508776,132577301	0.971429
suprapubic_skin_male_adult_37_years	chr10	8453788	8453789	8453788	-	High_confidence	11	12	17	1.420707	3.101881	chr10	8453768	8453980	SINE|MIR|MIR	+	chr10	8434929	8453819	STRG.40215.1	-	8434929,8453647	8435782,8453819	0.882353
suprapubic_skin_male_adult_37_years	chr17	32684271	32684272	32684271	-	High_confidence	21	21	26	2.172847	4.209867	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32653863	32684284	MYO1D|ENST00000582217.1	-	32653863,32654476,32659114,32684174	32653947,32654621,32659338,32684284	0.692308
suprapubic_skin_male_adult_37_years	chr5	113105918	113105924	113105923	-	RAMPAGE_only	37	43	124	10.362807	5.754097	chr5	113105908	113106075	DNA|hAT-Charlie|MER5B	+	chr5	113101542	113104625	MCC|ENST00000505604.1	-	113101542,113104191	113101945,113104625	0.709677
suprapubic_skin_male_adult_37_years	chr20	24930628	24930692	24930639	+	High_confidence	26	27	148	12.368511	5.885867	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930631	24932971	STRG.66945.1	+	24930631,24931346	24930774,24932971	0.945946
suprapubic_skin_male_adult_37_years	chr3	27821583	27821607	27821583	+	High_confidence	3	3	11	0.919281	2.663533	chr3	27815983	27821983	LINE|L1|L1PA7	-	chr3	27821597	27860192	LINC01980|ENST00000455984.1	+	27821597,27824649,27860086	27821724,27824748,27860192	0.818182
suprapubic_skin_male_adult_37_years	chr12	46983409	46983445	46983444	-	RAMPAGE_only	3	3	9	0.752139	3.169925	chr12	46982582	46985206	LINE|L1|L1PA8	+	chr12	46977185	46977570	STRG.47828.1	-	46977185	46977570	0.555556
suprapubic_skin_male_adult_37_years	chr2	241372946	241372983	241372949	+	RAMPAGE_only	26	26	57	4.763548	4.851823	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241356296	241466030	FARP2|ENST00000373287.8	+	241356296,241373083,241403827,241404798,241407536,241411032,241413306,241417961,241431678,241434157,241434961,241436480,241441303,241456746,241462522,241463334,241463898,241465459	241356388,241373290,241403932,241404841,241407615,241411130,241413421,241418109,241431774,241434321,241435030,241436538,241441556,241456922,241462612,241463468,241463980,241466030	0.894737
suprapubic_skin_male_adult_37_years	chr13	105597695	105597706	105597698	-	RAMPAGE_only	23	23	71	5.933543	5.406009	chr13	105597641	105597768	LTR|ERVL-MaLR|MLT1H1	+	chr13	105572324	105599544	STRG.51174.1	-	105572324,105597507,105597957,105599516	105573347,105597807,105598113,105599544	0.859155
suprapubic_skin_male_adult_37_years	chr6	139697472	139697473	139697472	-	High_confidence	465	472	474	39.612665	5.631782	chr6	139697058	139698478	LTR|ERV1|LTR12C	-	chr6	139689940	139697466	STRG.28289.2	-	139689940,139697041	139692034,139697466	0.940928
suprapubic_skin_male_adult_37_years	chr15	37984710	37984742	37984739	+	RAMPAGE_only	12	14	60	5.014261	4.981728	chr15	37984710	37984905	LTR|ERVL-MaLR|MLT1A0	+	chr15	38004745	38025018	LINC02345|ENST00000557883.2	+	38004745,38020191,38024680	38004832,38020532,38025018	0.500000
suprapubic_skin_male_adult_37_years	chr8	12708440	12708472	12708440	-	RAMPAGE_only	3	3	16	1.337136	3.077820	chr8	12708043	12712564	LTR|ERV1|HERVE-int	-	chr8	12696306	12697273	OR7E15P|ENST00000533484.1	-	12696306	12697273	0.937500
suprapubic_skin_male_adult_37_years	chr1	226685469	226685542	226685502	-	High_confidence	14	18	69	5.766401	5.224203	chr1	226685320	226685763	LINE|L2|L2c	+	chr1	226631689	226685653	STRG.6026.3	-	226631689,226637678,226639556,226641920,226647166,226648671,226685368	226634886,226637750,226639658,226642125,226647380,226648771,226685653	0.913043
suprapubic_skin_male_adult_37_years	chrX	147937502	147937542	147937510	+	RAMPAGE_only	3	3	15	1.253565	3.324863	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.666667
suprapubic_skin_male_adult_37_years	chr10	3780920	3780931	3780930	-	RAMPAGE_only	4	4	11	0.919281	2.845351	chr10	3780909	3781012	LINE|CR1|L3b	+	chr10	3780326	3785193	KLF6|ENST00000469435.1	-	3780326,3784912	3782214,3785193	0.636364
suprapubic_skin_male_adult_37_years	chr8	18063185	18063205	18063197	-	High_confidence	6	7	13	1.086423	2.688722	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.923077
suprapubic_skin_male_adult_37_years	chr8	12488614	12488650	12488644	-	High_confidence	12	12	62	5.181403	5.217462	chr8	12485575	12493402	LTR|ERV1|HERVE-int	-	chr8	12486935	12488699	STRG.33929.1	-	12486935,12488484	12487908,12488699	0.870968
suprapubic_skin_male_adult_37_years	chr9	33068838	33068849	33068838	-	RAMPAGE_only	3	3	8	0.668568	2.500000	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	1.000000
suprapubic_skin_male_adult_37_years	chr1	19344364	19344396	19344373	-	RAMPAGE_only	4	4	32	2.674273	4.171465	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.968750
suprapubic_skin_male_adult_37_years	chr8	12522766	12522814	12522813	+	High_confidence	32	32	138	11.532801	5.363574	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12522527	12567845	STRG.33952.1	+	12522527,12530942,12565885	12522846,12531031,12567845	0.775362
suprapubic_skin_male_adult_37_years	chr1	54850830	54851049	54850845	-	RAMPAGE_only	14	27	154	12.869938	5.762289	chr1	54850787	54850913	SINE|MIR|MIR3	-	chr1	54849663	54886890	DHCR24|ENST00000648712.1	-	54849663,54853433,54854036,54865302,54871349,54875092,54875941,54879059,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54879319,54883773,54886890	1.000000
suprapubic_skin_male_adult_37_years	chr6	78998264	78998295	78998264	-	High_confidence	2	2	13	1.086423	3.084963	chr6	78998067	78998230	LINE|L1|L1ME4a	-	chr6	78940545	78997893	STRG.26968.2	-	78940545,78945299,78946000,78946710,78954813,78955231,78955612,78958474,78961689,78963096,78965702,78965944,78969834,78970048,78970780,78978591,78982885,78985351,78988208,78990867,78997413	78941330,78945497,78946260,78946874,78954963,78955282,78955682,78958600,78961810,78963252,78965764,78966056,78969917,78970173,78970888,78978711,78983117,78985428,78988349,78990982,78997893	0.846154
suprapubic_skin_male_adult_37_years	chr17	76586949	76586957	76586956	-	High_confidence	5	6	10	0.835710	2.725481	chr17	76586602	76586930	DNA|hAT-Charlie|MER1B	-	chr17	76570909	76586956	ST6GALNAC2|ENST00000588005.5	-	76570909,76572636,76573194,76574364,76578755,76586868	76570923,76572775,76573299,76574539,76578816,76586956	0.500000
suprapubic_skin_male_adult_37_years	chr3	57560373	57560395	57560394	+	RAMPAGE_only	3	3	8	0.668568	2.521641	chr3	57560303	57560625	SINE|Alu|AluSq2	-	chr3	57556276	57566844	PDE12|ENST00000311180.8	+	57556276,57559309,57559561	57557687,57559388,57566844	0.750000
suprapubic_skin_male_adult_37_years	chr6	160926942	160926990	160926942	+	High_confidence	6	6	18	1.504278	3.572469	chr6	160926775	160927209	LTR|ERVL-MaLR|MLT1A	+	chr6	160926368	160927162	AL391361.3|ENST00000420601.1	+	160926368,160926993	160926578,160927162	0.611111
suprapubic_skin_male_adult_37_years	chr6	31587009	31587014	31587009	+	High_confidence	7	11	18	1.504278	3.572469	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.888889
suprapubic_skin_male_adult_37_years	chr4	142474348	142474408	142474407	-	High_confidence	36	37	54	4.512835	4.856196	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.703704
suprapubic_skin_male_adult_37_years	chr19	49086520	49086547	49086520	+	High_confidence	8	11	20	1.671420	4.021928	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.750000
suprapubic_skin_male_adult_37_years	chr20	31779634	31779686	31779651	+	RAMPAGE_only	11	13	80	6.685682	4.536951	chr20	31779639	31780006	LINE|L2|L2b	-	chr20	31739297	31801796	STRG.67063.2	+	31739297,31757406,31760056,31766555,31770342,31771559,31775866,31777486,31778812,31782248,31783704,31792734,31793847,31794401,31797403,31798364,31800969	31739621,31757582,31760179,31766682,31770471,31771682,31775988,31777638,31778984,31782390,31783921,31792830,31794024,31794548,31797515,31798552,31801796	0.987500
suprapubic_skin_male_adult_37_years	chr12	10363706	10363707	10363706	+	High_confidence	6	6	9	0.752139	2.500000	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.888889
suprapubic_skin_male_adult_37_years	chr6	154410359	154410382	154410359	-	RAMPAGE_only	9	9	15	1.253565	2.896292	chr6	154410171	154410317	SINE|MIR|MIR3	-	chr6	154405462	154434073	CNKSR3|ENST00000433165.6	-	154405462,154410342,154410933,154414298,154422505,154422914,154428127,154430471,154433465,154433778	154406652,154410432,154411142,154414423,154422652,154422983,154428187,154430591,154433507,154434073	0.933333
suprapubic_skin_male_adult_37_years	chr7	73799541	73799542	73799541	+	High_confidence	9	9	9	0.752139	2.947703	chr7	73799195	73799666	LTR|ERV1|MER31A	+	chr7	73799541	73829366	CLDN4|ENST00000466411.1	+	73799541,73827612,73828599,73829201	73799829,73827678,73828673,73829366	0.777778
suprapubic_skin_male_adult_37_years	chr5	160938585	160938586	160938585	-	RAMPAGE_only	10	10	11	0.919281	2.646439	chr5	160938478	160938828	LTR|ERVL|LTR18A	-	chr5	160687910	160929468	STRG.24696.8	-	160687910,160716908,160785558,160929221	160688094,160717034,160785803,160929468	0.818182
suprapubic_skin_male_adult_37_years	chr17	8413611	8413631	8413630	+	High_confidence	4	4	23	1.922134	3.481715	chr17	8413630	8413872	SINE|MIR|MIRc	+	chr17	8413194	8446884	NDEL1|ENST00000580237.5	+	8413194,8444259,8444623,8445710,8446753	8413269,8444357,8444742,8445864,8446884	0.739130
suprapubic_skin_male_adult_37_years	chr1	238486003	238486037	238486034	-	High_confidence	9	12	29	2.423560	4.017825	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.758621
suprapubic_skin_male_adult_37_years	chr8	101202400	101202411	101202410	-	High_confidence	5	5	11	0.919281	2.521928	chr8	101202158	101202485	SINE|Alu|AluSg7	+	chr8	101198936	101201657	ZNF706|ENST00000519103.1	-	101198936,101199989,101201606	101199239,101200123,101201657	0.818182
suprapubic_skin_male_adult_37_years	chr13	27445109	27445120	27445119	-	RAMPAGE_only	4	4	8	0.668568	2.500000	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	1.000000
suprapubic_skin_male_adult_37_years	chr1	171268995	171268996	171268995	+	RAMPAGE_only	24	25	33	2.757844	3.448391	chr1	171268815	171269160	LTR|ERVL-MaLR|THE1B	+	chr1	171275345	171283196	FMO1|ENST00000472893.1	+	171275345,171278728,171280785,171281977,171283143	171275508,171278871,171280985,171282065,171283196	0.848485
suprapubic_skin_male_adult_37_years	chr15	80059915	80059933	80059918	+	High_confidence	77	91	198	16.547063	5.072550	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.979798
suprapubic_skin_male_adult_37_years	chr1	109010919	109010965	109010919	-	RAMPAGE_only	3	3	19	1.587849	3.836592	chr1	109010578	109010881	SINE|Alu|AluY	-	chr1	108970213	109041986	WDR47|ENST00000400794.7	-	108970213,108974535,108981732,108982608,108983281,108986522,108991253,108995579,109002223,109004591,109010915,109013819,109017517,109023354,109041861	108971572,108974754,108981864,108982779,108983451,108986680,108991329,108995837,109002402,109004718,109011718,109013925,109017601,109023521,109041986	0.947368
suprapubic_skin_male_adult_37_years	chr20	34132095	34132138	34132137	+	High_confidence	4	4	16	1.337136	3.506891	chr20	34131810	34133679	Retroposon|SVA|SVA_D	+	chr20	34132398	34136519	STRG.67122.1	+	34132398,34135500	34132510,34136519	0.875000
suprapubic_skin_male_adult_37_years	chr6	122788455	122788488	122788455	+	High_confidence	4	4	14	1.169994	3.664498	chr6	122788289	122788477	DNA|hAT-Charlie|MER5A	-	chr6	122788472	122809717	STRG.27929.3	+	122788472,122796823,122803663,122804908,122806232,122809090	122789458,122796968,122803833,122805089,122806357,122809717	0.928571
suprapubic_skin_male_adult_37_years	chr9	127531671	127531737	127531671	-	RAMPAGE_only	10	10	27	2.256418	3.856196	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.888889
suprapubic_skin_male_adult_37_years	chr11	58578066	58578131	58578102	-	High_confidence	3	5	18	1.504278	3.572469	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.611111
suprapubic_skin_male_adult_37_years	chr7	99410146	99410147	99410146	+	High_confidence	7	7	8	0.668568	2.521641	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.750000
suprapubic_skin_male_adult_37_years	chr2	177234004	177234021	177234006	-	RAMPAGE_only	3	7	18	1.504278	3.614369	chr2	177233751	177233962	SINE|MIR|MIRc	-	chr2	177231713	177263567	NFE2L2|ENST00000448782.5	-	177231713,177232391,177233249,177234004,177263436	177232008,177232583,177233339,177234271,177263567	0.833333
suprapubic_skin_male_adult_37_years	chr21	29077458	29077478	29077458	+	High_confidence	2	2	8	0.668568	2.521641	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077470	29175889	MAP3K7CL|NM_020152.3	+	29077470,29080551,29085071,29085812,29091500,29091667,29092438,29149188,29159940,29174711	29077713,29080708,29085143,29085917,29091576,29091761,29092581,29149250,29160056,29175889	0.750000
suprapubic_skin_male_adult_37_years	chr12	3764818	3764819	3764818	-	High_confidence	7	10	10	0.835710	2.921928	chr12	3764482	3765028	LTR|ERVL|MLT2A2	-	chr12	3612878	3764819	STRG.46788.2	-	3612878,3616953,3619270,3627435,3627624,3633603,3638123,3641731,3644594,3648541,3654211,3656310,3659563,3673445,3678914,3680237,3696771,3713236,3732941,3764564	3615439,3617030,3619372,3627550,3627706,3633736,3638457,3641838,3644640,3648613,3654399,3656406,3659654,3673592,3679098,3680349,3697035,3713317,3733210,3764819	1.000000
suprapubic_skin_male_adult_37_years	chr17	43508361	43508494	43508361	+	RAMPAGE_only	4	4	33	2.757844	3.922590	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	1.000000
suprapubic_skin_male_adult_37_years	chr14	96077498	96077501	96077500	+	RAMPAGE_only	13	25	30	2.507131	4.137538	chr14	96077298	96077697	LTR|ERVL-MaLR|MLT1B	+	chr14	96039383	96086809	C14orf132|ENST00000553782.1	+	96039383,96040274,96086510	96039527,96040367,96086809	0.533333
suprapubic_skin_male_adult_37_years	chr5	140655856	140655987	140655985	+	RAMPAGE_only	13	20	84	7.019966	4.828770	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.988095
suprapubic_skin_male_adult_37_years	chr7	103353930	103353957	103353930	+	High_confidence	3	3	8	0.668568	3.000000	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.875000
suprapubic_skin_male_adult_37_years	chr12	21472448	21472449	21472448	-	High_confidence	29	29	29	2.423560	4.349192	chr12	21472270	21472755	LTR|ERV1|MER66D	-	chr12	21468910	21472436	STRG.47368.6	-	21468910,21470968,21471427,21472197	21470346,21471098,21471647,21472436	1.000000
suprapubic_skin_male_adult_37_years	chr12	53251623	53251658	53251623	+	High_confidence	7	8	21	1.754991	3.784942	chr12	53251547	53251701	SINE|MIR|MIRc	-	chr12	53251652	53253752	MFSD5|ENST00000551660.2	+	53251652,53252817	53252035,53253752	1.000000
suprapubic_skin_male_adult_37_years	chrX	152920368	152920394	152920368	+	High_confidence	9	9	16	1.337136	3.500000	chrX	152920417	152920551	SINE|MIR|MIR3	+	chrX	152920348	152973471	STRG.72923.10	+	152920348,152920709,152922172,152928574,152931671,152932872,152938073,152945266,152959698,152963838,152965446,152967166,152969381,152970442,152971273	152920411,152920748,152922256,152928661,152931776,152932971,152938163,152945464,152959896,152963949,152965527,152967238,152969484,152970541,152973471	0.937500
suprapubic_skin_male_adult_37_years	chr1	6208681	6208682	6208681	-	High_confidence	244	245	245	20.474901	3.978304	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.971429
suprapubic_skin_male_adult_37_years	chr15	55270912	55270922	55270921	-	High_confidence	9	10	28	2.339989	3.753434	chr15	55270754	55271222	LINE|L2|L2	+	chr15	55202965	55270909	RAB27A|NM_183236.2	-	55202965,55223888,55228608,55230400,55234781,55270164,55270858	55205705,55224012,55228712,55230486,55234956,55270284,55270909	1.000000
suprapubic_skin_male_adult_37_years	chr9	133104513	133104526	133104513	-	High_confidence	2	2	11	0.919281	2.521928	chr9	133104414	133104534	SINE|MIR|MIRc	+	chr9	133102517	133104602	RALGDS|ENST00000471109.1	-	133102517,133102778,133103229,133103746,133104262	133102571,133102900,133103262,133103833,133104602	0.909091
suprapubic_skin_male_adult_37_years	chr17	56412560	56412613	56412612	+	High_confidence	13	14	59	4.930690	5.129280	chr17	56412352	56412894	LTR|ERVL|MLT2A2	+	chr17	56412622	56482649	STRG.61396.1	+	56412622,56440326,56442842,56449078,56456860,56457256,56457862,56466355,56477487,56480667,56482355	56412815,56440424,56442933,56449186,56456960,56457389,56457979,56466571,56477654,56480818,56482649	0.966102
suprapubic_skin_male_adult_37_years	chr12	9407471	9407507	9407506	-	High_confidence	42	46	80	6.685682	5.145191	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9404707	9407488	STRG.46990.2	-	9404707,9406182,9407307	9405223,9406398,9407488	0.862500
suprapubic_skin_male_adult_37_years	chr3	161282573	161282623	161282573	-	High_confidence	9	10	30	2.507131	3.995238	chr3	161282195	161282741	LTR|ERVL|MLT2A2	-	chr3	161267597	161282617	STRG.17387.1	-	161267597,161270388	161270342,161282617	0.933333
suprapubic_skin_male_adult_37_years	chr9	37603200	37603297	37603230	+	High_confidence	40	40	155	12.953509	6.406374	chr9	37603152	37603302	SINE|MIR|MIR3	+	chr9	37603009	37746902	STRG.37553.2	+	37603009,37692637,37707415,37708398,37711349,37719068,37724224,37729727,37730983,37732303,37733472,37733729,37735551,37737095,37740077,37744388	37603339,37692742,37707573,37708501,37711395,37719176,37724320,37729853,37731103,37732440,37733599,37733825,37735734,37737243,37740884,37746902	0.709677
suprapubic_skin_male_adult_37_years	chr1	94025482	94025529	94025482	-	High_confidence	3	3	9	0.752139	2.947703	chr1	94025180	94025939	LINE|L2|L2a	+	chr1	94019581	94025595	ABCA4|ENST00000460514.1	-	94019581,94021239,94021639,94021845,94023385,94024953,94025562	94019759,94021409,94021714,94021951,94023418,94025048,94025595	0.888889
suprapubic_skin_male_adult_37_years	chr19	45450739	45450766	45450739	-	High_confidence	10	10	30	2.507131	4.349192	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.566667
suprapubic_skin_male_adult_37_years	chr16	58423177	58423183	58423177	+	High_confidence	7	8	17	1.420707	3.875000	chr16	58423064	58423375	LINE|L1|L1ME3G	-	chr16	58423185	58462838	STRG.58083.1	+	58423185,58435691,58461470,58462153	58423348,58435823,58461582,58462838	0.764706
suprapubic_skin_male_adult_37_years	chr6	43013345	43013393	43013392	-	High_confidence	7	7	13	1.086423	3.700440	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
suprapubic_skin_male_adult_37_years	chr11	64242523	64242547	64242546	+	High_confidence	6	6	20	1.671420	3.405822	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.950000
suprapubic_skin_male_adult_37_years	chrX	93434924	93434944	93434943	+	High_confidence	17	19	60	5.014261	5.259679	chrX	93430164	93437998	LTR|ERV1|HERVE-int	+	chrX	93434918	93436573	STRG.72013.1	+	93434918	93436573	0.983333
suprapubic_skin_male_adult_37_years	chr1	34781517	34781600	34781566	+	High_confidence	5	7	39	3.259270	4.926428	chr1	34781455	34781569	SINE|MIR|MIRc	-	chr1	34781188	34786364	GJB3|ENST00000373366.2	+	34781188,34784737	34781778,34786364	0.948718
suprapubic_skin_male_adult_37_years	chr20	34546833	34546872	34546871	+	High_confidence	2	2	6	0.501426	2.584963	chr20	34546707	34546884	LTR|ERVL-MaLR|MLT1J	-	chr20	34546883	34560345	MAP1LC3A|NM_181509.2	+	34546883,34549904,34559207,34559346,34559735	34546916,34550029,34559263,34559453,34560345	0.833333
suprapubic_skin_male_adult_37_years	chr19	55069773	55069815	55069773	-	High_confidence	11	17	55	4.596406	5.032303	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55063219	55069540	RDH13|ENST00000588306.1	-	55063219,55064295,55068758,55069367	55063371,55064342,55068828,55069540	0.672727
suprapubic_skin_male_adult_37_years	chr18	31833411	31833415	31833414	-	High_confidence	3	4	8	0.668568	2.521641	chr18	31833346	31833569	LINE|L2|L2	+	chr18	31830497	31833406	TRAPPC8|ENST00000582509.1	-	31830497,31832083,31833275	31830989,31832173,31833406	0.875000
suprapubic_skin_male_adult_37_years	chr1	219459152	219459179	219459168	-	High_confidence	4	4	20	1.671420	3.884184	chr1	219458918	219459231	SINE|Alu|AluSc8	+	chr1	219435152	219459369	AL513283.1|ENST00000640010.1	-	219435152,219437055,219458857	219435413,219437173,219459369	0.700000
suprapubic_skin_male_adult_37_years	chr16	29963560	29963579	29963578	+	High_confidence	5	5	11	0.919281	2.663533	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.727273
suprapubic_skin_male_adult_37_years	chr2	178304458	178304461	178304458	-	RAMPAGE_only	12	12	19	1.587849	3.239098	chr2	178304220	178304583	LTR|ERVL-MaLR|THE1C	-	chr2	178254815	178256126	STRG.11491.1	-	178254815	178256126	0.789474
suprapubic_skin_male_adult_37_years	chr22	30588058	30588098	30588058	-	High_confidence	3	4	14	1.169994	3.546594	chr22	30587924	30588011	SINE|MIR|MIRb	-	chr22	30584226	30588023	PES1|ENST00000477762.5	-	30584226,30584545,30587285,30588020	30584454,30584717,30587395,30588023	0.857143
suprapubic_skin_male_adult_37_years	chr9	127451026	127451122	127451121	-	High_confidence	3	3	21	1.754991	3.300559	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.761905
suprapubic_skin_male_adult_37_years	chr17	2667132	2667196	2667195	+	High_confidence	13	13	27	2.256418	4.106377	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	1.000000
suprapubic_skin_male_adult_37_years	chrX	7147287	7147288	7147287	+	High_confidence	11	11	12	1.002852	3.095795	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.666667
suprapubic_skin_male_adult_37_years	chr1	23417917	23417918	23417917	-	RAMPAGE_only	5	5	8	0.668568	2.521641	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.875000
suprapubic_skin_male_adult_37_years	chr6	53474676	53474709	53474676	+	RAMPAGE_only	8	8	23	1.922134	3.882045	chr6	53469147	53474826	LINE|L1|L1MA3	-	chr6	53503184	53506919	AL033397.2|ENST00000508884.1	+	53503184,53506153,53506797	53503328,53506434,53506919	0.826087
suprapubic_skin_male_adult_37_years	chr17	8105308	8105336	8105308	-	RAMPAGE_only	5	5	13	1.086423	2.623517	chr17	8105088	8105633	LINE|L2|L2a	+	chr17	8096248	8103515	ALOXE3|ENST00000583808.1	-	8096248,8103322	8096806,8103515	0.923077
suprapubic_skin_male_adult_37_years	chr15	34988766	34988785	34988784	-	High_confidence	4	7	19	1.587849	3.614369	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988751	STRG.54471.9	-	34978340,34987556,34988502	34983490,34987673,34988751	0.894737
suprapubic_skin_male_adult_37_years	chr9	62376632	62376633	62376632	+	High_confidence	7	7	11	0.919281	2.721928	chr9	62376600	62376639	SINE|MIR|MIRb	+	chr9	62376516	62434385	FGF7P6|ENST00000452826.2	+	62376516,62432875	62376813,62434385	0.909091
suprapubic_skin_male_adult_37_years	chr12	104030726	104030747	104030726	+	High_confidence	9	9	21	1.754991	3.932138	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.857143
suprapubic_skin_male_adult_37_years	chr14	105079769	105079775	105079769	-	High_confidence	8	8	17	1.420707	2.910992	chr14	105078600	105080045	Retroposon|SVA|SVA_D	-	chr14	105078746	105079918	STRG.54110.1	-	105078746	105079918	0.941176
suprapubic_skin_male_adult_37_years	chr9	20658312	20658343	20658312	+	High_confidence	10	10	39	3.259270	3.714012	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658314	20770112	STRG.37158.4	+	20658314,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.666667
suprapubic_skin_male_adult_37_years	chr17	59619894	59619923	59619894	+	High_confidence	762	888	2752	229.987456	5.145420	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.970567
suprapubic_skin_male_adult_37_years	chr4	8436122	8436139	8436138	+	High_confidence	21	21	39	3.259270	3.968476	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8436139	8439301	TRMT44|ENST00000532937.1	+	8436139,8438791	8436399,8439301	0.948718
suprapubic_skin_male_adult_37_years	chr6	6745262	6745263	6745262	-	High_confidence	19	19	24	2.005705	3.970176	chr6	6744950	6746228	LTR|ERV1|LTR12E	-	chr6	6704035	6745251	STRG.25217.1	-	6704035,6710871,6711696,6744936	6705078,6710981,6711858,6745251	0.916667
suprapubic_skin_male_adult_37_years	chr10	103605823	103605824	103605823	-	RAMPAGE_only	6	8	8	0.668568	2.807355	chr10	103605815	103605885	LINE|CR1|L3	+	chr10	103599519	103693623	SH3PXD2A|ENST00000315994.6	-	103599519,103605797,103611580,103612852,103617196,103627088,103660982,103668607,103673437,103693027,103693333,103693599	103603789,103605917,103611630,103613190,103617314,103627202,103661114,103668652,103673556,103693056,103693478,103693623	0.750000
suprapubic_skin_male_adult_37_years	chr5	75336514	75336527	75336517	+	High_confidence	30	42	118	9.861381	5.368159	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.872881
suprapubic_skin_male_adult_37_years	chr2	73982163	73982169	73982163	-	High_confidence	16	16	42	3.509983	3.609680	chr2	73982060	73982404	LINE|L2|L2c	-	chr2	73957966	73981439	DGUOK-AS1|NR_104030.1	-	73957966,73981134	73958207,73981439	0.952381
suprapubic_skin_male_adult_37_years	chr8	141340541	141340557	141340556	+	High_confidence	7	7	18	1.504278	3.381580	chr8	141340243	141340799	LTR|ERV1|MER4B	-	chr8	141340548	141344621	LINC01300|ENST00000521073.5	+	141340548,141342340,141342957,141344343	141340672,141342476,141343215,141344621	0.944444
suprapubic_skin_male_adult_37_years	chr4	56657791	56657803	56657801	-	RAMPAGE_only	3	4	11	0.919281	2.846439	chr4	56657736	56657851	SINE|MIR|MIR3	-	chr4	56647999	56651202	HOPX|ENST00000503864.2	-	56647999	56651202	0.727273
suprapubic_skin_male_adult_37_years	chr11	35207900	35207967	35207953	+	RAMPAGE_only	4	4	24	2.005705	3.653107	chr11	35207888	35207973	DNA|TcMar-Tigger|MamRep137	+	chr11	35201678	35211401	CD44|ENST00000528672.1	+	35201678,35204511,35208104,35209964,35211245	35201787,35204640,35208206,35210054,35211401	0.750000
suprapubic_skin_male_adult_37_years	chr12	109878996	109878999	109878996	+	RAMPAGE_only	15	15	42	3.509983	5.041011	chr12	109878962	109879076	SINE|MIR|MIRb	-	chr12	109900263	109905027	TCHP|ENST00000537218.1	+	109900263,109903026,109903936,109904736	109900426,109903214,109904147,109905027	0.547619
suprapubic_skin_male_adult_37_years	chr3	39407631	39407729	39407682	+	High_confidence	13	13	68	5.682830	5.064450	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.897059
suprapubic_skin_male_adult_37_years	chr12	8681676	8681677	8681676	+	High_confidence	7	7	8	0.668568	2.521641	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.625000
suprapubic_skin_male_adult_37_years	chr16	2757801	2757915	2757847	+	High_confidence	12	13	115	9.610668	5.476066	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2761707	STRG.57001.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746,2760300,2761560	2757945,2758547,2759047,2759172,2759402,2759661,2760008,2760499,2761707	0.965217
suprapubic_skin_male_adult_37_years	chr3	128626784	128626821	128626820	-	RAMPAGE_only	8	8	13	1.086423	3.180833	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	1.000000
suprapubic_skin_male_adult_37_years	chr18	36122222	36122249	36122242	-	High_confidence	7	7	23	1.922134	3.642490	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.913043
suprapubic_skin_male_adult_37_years	chr13	46097235	46097239	46097238	+	High_confidence	17	17	31	2.590702	4.696132	chr13	46096795	46098485	LTR|ERVL|ERV3-16A3_I-int	+	chr13	46097215	46113697	STRG.50537.1	+	46097215,46098397,46113183	46097399,46098781,46113697	0.903226
suprapubic_skin_male_adult_37_years	chr4	128427977	128428016	128427977	+	High_confidence	3	3	16	1.337136	3.625000	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.937500
suprapubic_skin_male_adult_37_years	chrX	84078758	84078759	84078758	-	RAMPAGE_only	6	6	7	0.584997	2.584963	chrX	84078165	84078974	LINE|L1|L1ME1	+	chrX	84058345	84186141	RPS6KA6|ENST00000620340.4	-	84058345,84064970,84096193,84097771,84102036,84104498,84105786,84106364,84106909,84107622,84116228,84117059,84117383,84119884,84134781,84135103,84145477,84146977,84148041,84156074,84164327,84186060	84064402,84065111,84096311,84097848,84102198,84104657,84105876,84106487,84107040,84107725,84116287,84117148,84117454,84120027,84134819,84135210,84145557,84147058,84148123,84156191,84164387,84186141	0.857143
suprapubic_skin_male_adult_37_years	chr5	133161708	133161721	133161720	+	RAMPAGE_only	4	4	9	0.752139	2.947703	chr5	133161528	133161832	LTR|ERVL-MaLR|MLT1D	+	chr5	133160437	133224303	AC010307.2|ENST00000509051.1	+	133160437,133207835,133208264,133224083	133160512,133207928,133208342,133224303	0.777778
suprapubic_skin_male_adult_37_years	chr12	50924027	50924051	50924027	+	High_confidence	3	5	8	0.668568	2.750000	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50924004	50929955	METTL7A|ENST00000550502.1	+	50924004,50925036,50929913	50924080,50925536,50929955	0.750000
suprapubic_skin_male_adult_37_years	chr22	30973576	30973599	30973598	+	RAMPAGE_only	4	4	17	1.420707	3.101881	chr22	30973598	30973802	SINE|MIR|MIRc	-	chr22	30972262	30976063	TUG1|ENST00000602393.1	+	30972262,30975169	30973601,30976063	1.000000
suprapubic_skin_male_adult_37_years	chr8	143281636	143281687	143281686	-	High_confidence	58	65	161	13.454935	4.699942	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.857143
suprapubic_skin_male_adult_37_years	chr1	178299516	178299519	178299516	+	High_confidence	7	7	12	1.002852	3.022055	chr1	178299495	178299794	SINE|Alu|AluSc	-	chr1	178299440	178444847	STRG.5061.4	+	178299440,178299991,178390099,178420510,178439421,178441548,178442674	178299830,178300118,178390206,178420620,178439575,178441647,178444847	0.916667
suprapubic_skin_male_adult_37_years	chr19	10825134	10825212	10825211	+	RAMPAGE_only	5	5	28	2.339989	3.753434	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	0.964286
suprapubic_skin_male_adult_37_years	chr6	36369309	36369310	36369309	-	RAMPAGE_only	27	29	33	2.757844	4.538910	chr6	36369227	36369398	SINE|MIR|MIRb	-	chr6	36354090	36387566	ETV7|ENST00000339796.9	-	36354090,36366874,36368928,36371329,36373452,36375870,36385533,36387535	36354687,36366975,36369071,36371560,36373578,36376035,36385669,36387566	0.878788
suprapubic_skin_male_adult_37_years	chr20	41345546	41345557	41345546	+	High_confidence	19	24	35	2.924986	4.278352	chr20	41345479	41345635	SINE|MIR|MIR1_Amn	-	chr20	41344769	41358829	STRG.67349.5	+	41344769,41345795,41347551,41348618,41349088,41349773,41350054,41351820,41352059,41352337,41352797,41354644,41354819,41355895,41357039,41357881,41358438,41358721	41345702,41345995,41347647,41348887,41349172,41349894,41350397,41351920,41352220,41352699,41352867,41354737,41354863,41356034,41357447,41358351,41358542,41358829	0.771429
suprapubic_skin_male_adult_37_years	chr1	1655395	1655445	1655444	-	RAMPAGE_only	6	6	24	2.005705	4.004886	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.708333
suprapubic_skin_male_adult_37_years	chr9	39809852	39809868	39809856	-	High_confidence	3	3	11	0.919281	2.721928	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.636364
suprapubic_skin_male_adult_37_years	chr11	72821147	72821180	72821179	+	RAMPAGE_only	3	3	14	1.169994	3.392747	chr11	72821118	72821264	SINE|MIR|MIRb	+	chr11	72816744	72823286	STRG.45243.11	+	72816744,72817755,72822043,72822477,72822847	72816827,72821741,72822295,72822543,72823286	0.928571
suprapubic_skin_male_adult_37_years	chr3	180870518	180870552	180870518	-	High_confidence	4	5	12	1.002852	2.855389	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180782036	180870437	STRG.17620.1	-	180782036,180847506,180870046	180782124,180847624,180870437	1.000000
suprapubic_skin_male_adult_37_years	chr8	137070477	137070480	137070479	-	High_confidence	104	196	245	20.474901	5.186559	chr8	137070218	137070658	LTR|ERVL-MaLR|MLT1C	-	chr8	137067953	137070475	STRG.36186.1	-	137067953,137069723,137070292	137068201,137069844,137070475	0.771429
suprapubic_skin_male_adult_37_years	chr16	20676161	20676162	20676161	-	High_confidence	17	19	20	1.671420	3.747413	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.900000
suprapubic_skin_male_adult_37_years	chr10	103746765	103746806	103746805	+	High_confidence	3	3	23	1.922134	4.142915	chr10	103746609	103747070	LINE|L2|L2b	+	chr10	103746792	103754466	SH3PXD2A-AS1|ENST00000625265.1	+	103746792,103749781,103753843	103747096,103749920,103754466	0.869565
suprapubic_skin_male_adult_37_years	chr8	124673331	124673376	124673346	-	High_confidence	14	15	43	3.593554	3.501732	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.953488
suprapubic_skin_male_adult_37_years	chr7	64999443	64999444	64999443	-	High_confidence	161	162	172	14.374216	6.152793	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64990808	64999430	STRG.30626.5	-	64990808,64999120	64993414,64999430	0.965116
suprapubic_skin_male_adult_37_years	chr2	178304567	178304568	178304567	-	RAMPAGE_only	45	51	53	4.429264	3.835808	chr2	178304220	178304583	LTR|ERVL-MaLR|THE1C	-	chr2	178254815	178256126	STRG.11491.1	-	178254815	178256126	0.622642
suprapubic_skin_male_adult_37_years	chr2	71024068	71024075	71024068	+	High_confidence	4	4	12	1.002852	3.251629	chr2	71020399	71024471	LTR|ERV1|HERVE-int	+	chr2	71024074	71029931	OR7E91P|NR_002185.3	+	71024074,71024305,71028915	71024200,71024394,71029931	1.000000
suprapubic_skin_male_adult_37_years	chr1	211548268	211548307	211548306	-	High_confidence	81	82	144	12.034227	6.276628	chr1	211547417	211548345	LINE|L2|L2a	+	chr1	211530780	211548296	STRG.5687.1	-	211530780,211547967	211531908,211548296	0.819444
suprapubic_skin_male_adult_37_years	chr17	39970324	39970334	39970324	+	RAMPAGE_only	3	3	10	0.835710	2.721928	chr17	39970223	39970391	SINE|MIR|MIRb	-	chr17	39962972	39977766	GSDMA|NM_178171.4	+	39962972,39965682,39966259,39970481,39971523,39972128,39972586,39973809,39974272,39974899,39975923,39976815	39963085,39965901,39966437,39970647,39971620,39972176,39972613,39973830,39974427,39975014,39975997,39977766	1.000000
suprapubic_skin_male_adult_37_years	chr12	8788252	8788253	8788252	+	High_confidence	7	7	8	0.668568	2.521641	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.875000
suprapubic_skin_male_adult_37_years	chr12	10363952	10363965	10363964	+	High_confidence	5	5	11	0.919281	2.921928	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.727273
suprapubic_skin_male_adult_37_years	chr7	6955686	6955730	6955729	-	RAMPAGE_only	9	10	18	1.504278	3.572431	chr7	6950904	6958745	LTR|ERV1|HERVE-int	-	chr7	6950545	6954458	STRG.29309.1	-	6950545,6953825	6953249,6954458	0.500000
suprapubic_skin_male_adult_37_years	chr12	12493626	12493694	12493693	-	High_confidence	4	4	21	1.754991	3.821928	chr12	12493040	12494039	LINE|L2|L2a	+	chr12	12475896	12493650	STRG.47201.3	-	12475896,12480222,12487027,12493591	12478015,12480346,12487187,12493650	0.904762
suprapubic_skin_male_adult_37_years	chr7	1097259	1097260	1097259	-	RAMPAGE_only	18	18	21	1.754991	3.921928	chr7	1097189	1098106	LINE|L1|L1MC4	+	chr7	997493	1127388	C7orf50|ENST00000488073.1	-	997493,1000469,1009949,1109327,1127256	997804,1000551,1010143,1109461,1127388	0.714286
suprapubic_skin_male_adult_37_years	chr12	105233207	105233220	105233207	-	High_confidence	3	3	7	0.584997	2.521641	chr12	105233175	105233274	LINE|L2|L2c	+	chr12	105177109	105233154	APPL2|ENST00000547809.5	-	105177109,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105233090	105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105233154	1.000000
suprapubic_skin_male_adult_37_years	chr17	2975621	2975661	2975660	+	RAMPAGE_only	8	8	40	3.342841	4.701944	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2853882	3037734	STRG.59245.1	+	2853882,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2854102,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037734	0.825000
suprapubic_skin_male_adult_37_years	chr1	147517874	147517875	147517874	-	High_confidence	18	23	23	1.922134	4.055958	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147258884	147517875	LINC00624|ENST00000619867.4	-	147258884,147384667,147408589,147514337,147515520,147517442	147260976,147384863,147408689,147514448,147515676,147517875	1.000000
suprapubic_skin_male_adult_37_years	chr3	50312710	50312812	50312756	-	High_confidence	42	42	190	15.878494	6.028856	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50300481	50312988	STRG.14726.8	-	50300481,50300987,50302056,50303787,50309658	50300800,50301077,50302980,50303953,50312988	0.994737
suprapubic_skin_male_adult_37_years	chr16	57641658	57641699	57641658	+	High_confidence	5	5	15	1.253565	3.373557	chr16	57641565	57641864	SINE|Alu|AluSz6	-	chr16	57640964	57651468	ADGRG1|ENST00000563414.5	+	57640964,57641590,57650252,57651199	57641064,57641708,57650351,57651468	0.800000
suprapubic_skin_male_adult_37_years	chr1	9894223	9894256	9894251	-	RAMPAGE_only	16	16	51	4.262122	5.015371	chr1	9894071	9894347	LINE|L1|L1MC4	-	chr1	9850449	9893237	CTNNBIP1|ENST00000377258.5	-	9850449,9871186,9871968,9877904,9893008	9850776,9871277,9872088,9877989,9893237	0.588235
suprapubic_skin_male_adult_37_years	chr13	32531969	32532019	32532014	-	RAMPAGE_only	78	83	184	15.377068	6.649595	chr13	32531749	32532214	LTR|ERVL-MaLR|MLT1D	-	chr13	32432890	32536383	STRG.50190.5	-	32432890,32436360,32438651,32442387,32517856,32521372,32522181,32527407,32535768	32432972,32436405,32438737,32444126,32518003,32521449,32522270,32527532,32536383	0.657609
suprapubic_skin_male_adult_37_years	chr15	42404759	42404806	42404759	+	High_confidence	97	107	384	32.091273	6.857034	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404778	42412317	CAPN3|NM_173090.1	+	42404778,42405925,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42405943,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412317	0.721354
suprapubic_skin_male_adult_37_years	chr8	141396232	141396233	141396232	+	RAMPAGE_only	12	15	15	1.253565	3.373557	chr8	141396213	141396373	SINE|MIR|MIRb	-	chr8	141391994	141431520	PTP4A3|ENST00000520105.5	+	141391994,141421387,141425047,141426938,141430926	141392084,141422345,141425140,141427069,141431520	0.533333
suprapubic_skin_male_adult_37_years	chr6	77369106	77369166	77369117	-	High_confidence	7	8	43	3.593554	4.768947	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77316682	77369135	STRG.26943.1	-	77316682,77350621,77368885	77316704,77350734,77369135	0.720930
suprapubic_skin_male_adult_37_years	chr1	147173203	147173250	147173219	+	High_confidence	4	4	16	1.337136	3.272906	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.937500
suprapubic_skin_male_adult_37_years	chr2	29114170	29114200	29114170	+	High_confidence	8	8	38	3.175699	3.803615	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.921053
suprapubic_skin_male_adult_37_years	chr17	41628650	41628696	41628695	-	High_confidence	21	23	88	7.354250	5.575925	chr17	41628668	41628794	LINE|L2|L2c	+	chr17	41626340	41628753	STRG.60746.40	-	41626340,41626789,41627886,41628354,41628604	41626631,41626839,41628106,41628469,41628753	0.875000
suprapubic_skin_male_adult_37_years	chr1	46750652	46750678	46750677	+	High_confidence	3	3	9	0.752139	2.725481	chr1	46750529	46750909	LTR|ERVL-MaLR|MLT1G3	+	chr1	46750648	46818814	STRG.1717.1	+	46750648,46764977,46765684,46767524,46810807,46811139,46812495,46813481,46813911,46814208,46815073,46817047,46817964,46818130,46818630	46751005,46765101,46765843,46767644,46810949,46811184,46812623,46813606,46814063,46814315,46815264,46817181,46818029,46818213,46818814	0.666667
suprapubic_skin_male_adult_37_years	chr4	73144770	73144797	73144774	-	RAMPAGE_only	3	3	9	0.752139	2.500000	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.888889
suprapubic_skin_male_adult_37_years	chr20	57987766	57987817	57987816	-	High_confidence	12	12	60	5.014261	4.814953	chr20	57987496	57988083	DNA|TcMar-Tigger|Tigger9b	-	chr20	57985798	57987810	STRG.67748.1	-	57985798,57987700	57987139,57987810	0.883333
suprapubic_skin_male_adult_37_years	chr9	120395637	120395677	120395642	-	RAMPAGE_only	13	13	64	5.348545	4.064272	chr9	120395586	120396182	DNA|TcMar-Tigger|Tigger13a	+	chr9	120389195	120401019	CDK5RAP2|ENST00000474262.5	-	120389195,120389740,120394511,120400741	120389292,120389787,120394638,120401019	0.875000
suprapubic_skin_male_adult_37_years	chr3	54637837	54637853	54637852	-	RAMPAGE_only	4	4	8	0.668568	2.807355	chr3	54636818	54639750	LTR|ERV1|HERVH-int	-	chr3	54632121	54639857	ESRG|ENST00000583516.1	-	54632121,54633558,54634460,54637690	54632807,54633740,54634565,54639857	0.875000
suprapubic_skin_male_adult_37_years	chr17	50536266	50536281	50536266	+	High_confidence	13	13	20	1.671420	3.546439	chr17	50536165	50536291	SINE|MIR|MIRb	+	chr17	50536426	50542121	EPN3|ENST00000574464.5	+	50536426,50538078,50538883,50539186,50540203,50540792,50541228,50541463,50541843	50537118,50538197,50538964,50539315,50540334,50541062,50541333,50541694,50542121	0.900000
suprapubic_skin_male_adult_37_years	chr12	64537440	64537485	64537443	-	High_confidence	6	8	51	4.262122	4.731755	chr12	64537295	64537465	SINE|MIR|MIRb	-	chr12	64537126	64537472	STRG.48486.1	-	64537126	64537472	0.764706
suprapubic_skin_male_adult_37_years	chr2	40717125	40717162	40717161	+	High_confidence	12	19	78	6.518540	4.850911	chr2	40716955	40717505	LTR|ERVL|MLT2B3	+	chr2	40717104	40732373	STRG.7906.2	+	40717104,40732197	40717420,40732373	0.538462
suprapubic_skin_male_adult_37_years	chr3	33838223	33838269	33838256	+	RAMPAGE_only	5	5	31	2.590702	3.973346	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.774194
suprapubic_skin_male_adult_37_years	chr19	7642274	7642317	7642316	+	High_confidence	3	3	10	0.835710	2.721928	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.700000
suprapubic_skin_male_adult_37_years	chr1	95092485	95092486	95092485	+	High_confidence	446	446	454	37.941245	5.102058	chr1	95091207	95092800	LTR|ERV1|LTR12C	+	chr1	95092492	95096271	STRG.3203.1	+	95092492	95096271	0.980176
suprapubic_skin_male_adult_37_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	9	10	10	0.835710	2.503258	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	0.900000
suprapubic_skin_male_adult_37_years	chr6	10434806	10434807	10434806	-	High_confidence	6	6	7	0.584997	2.584963	chr6	10434600	10434992	LTR|ERVL-MaLR|MLT1B	-	chr6	10429795	10434817	LINC00518|ENST00000491317.1	-	10429795,10433027,10434247,10434512	10430313,10433253,10434426,10434817	0.857143
suprapubic_skin_male_adult_37_years	chr5	96979799	96979837	96979809	+	RAMPAGE_only	5	5	15	1.253565	2.985228	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	0.933333
suprapubic_skin_male_adult_37_years	chr2	37384316	37384404	37384387	-	High_confidence	9	12	59	4.930690	5.314681	chr2	37383330	37385519	LTR|ERV1|HERVH-int	-	chr2	37375274	37384421	STRG.7810.1	-	37375274,37384167	37376302,37384421	0.576271
suprapubic_skin_male_adult_37_years	chr1	39310269	39310367	39310282	+	RAMPAGE_only	9	9	68	5.682830	5.064307	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.941176
suprapubic_skin_male_adult_37_years	chr1	211548064	211548081	211548064	-	High_confidence	3	3	10	0.835710	2.721928	chr1	211547417	211548345	LINE|L2|L2a	+	chr1	211530780	211548296	STRG.5687.1	-	211530780,211547967	211531908,211548296	0.600000
suprapubic_skin_male_adult_37_years	chr2	172839733	172839734	172839733	+	RAMPAGE_only	11	11	14	1.169994	3.392747	chr2	172839177	172839743	LTR|ERV1|MER41A	-	chr2	172847107	173017885	STRG.11366.4	+	172847107,172917801,172922280,172960759,172961121,172965561,172967260,172983495,172985432,172988195,172988692,172990809,172996465,173001265,173014463,173016348,173017173,173017425	172847631,172917874,172922300,172960813,172961228,172965683,172967444,172983580,172985493,172988272,172988839,172990925,172996554,173001344,173014614,173016437,173017204,173017885	0.857143
suprapubic_skin_male_adult_37_years	chr2	200889279	200889326	200889293	-	High_confidence	15	15	79	6.602111	5.514629	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.645570
suprapubic_skin_male_adult_37_years	chr6	70394883	70394884	70394883	+	High_confidence	120	120	155	12.953509	6.100763	chr6	70394625	70395013	LTR|ERV1|MER48	+	chr6	70394886	70399417	AL365226.2|ENST00000418403.1	+	70394886,70395229,70399214	70395043,70395266,70399417	0.709677
suprapubic_skin_male_adult_37_years	chr3	125123613	125123616	125123615	-	High_confidence	3	5	7	0.584997	2.807355	chr3	125123512	125123811	LTR|ERVL-MaLR|THE1B	-	chr3	125083142	125123599	SLC12A8|ENST00000465475.5	-	125083142,125107480,125110188,125118768,125120598,125123529	125084052,125108126,125110335,125118856,125120686,125123599	0.571429
suprapubic_skin_male_adult_37_years	chr12	13044158	13044159	13044158	+	High_confidence	15	15	22	1.838563	3.584184	chr12	13044134	13044231	SINE|MIR|MIRb	-	chr12	13044283	13083449	FAM234B|ENST00000197268.12	+	13044283,13055550,13058450,13061574,13062844,13066639,13067154,13068303,13068629,13071240,13076025,13079788,13080624	13044440,13055946,13058549,13061763,13062975,13066787,13067296,13068447,13068711,13071396,13076143,13080009,13083449	0.909091
suprapubic_skin_male_adult_37_years	chr1	166850100	166850125	166850124	+	RAMPAGE_only	11	11	24	2.005705	4.175736	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.916667
suprapubic_skin_male_adult_37_years	chr17	78160082	78160083	78160082	+	High_confidence	5	5	8	0.668568	2.500000	chr17	78159602	78160151	LINE|L1|L1MB5	-	chr17	78160063	78166155	C17orf99|ENST00000451352.3	+	78160063,78160954,78164094	78160106,78161254,78166155	1.000000
suprapubic_skin_male_adult_37_years	chr11	123061128	123061257	123061254	-	High_confidence	21	22	158	13.204222	5.550358	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.968354
suprapubic_skin_male_adult_37_years	chr10	101187209	101187212	101187211	+	RAMPAGE_only	3	6	6	0.501426	2.584963	chr10	101187097	101188408	LTR|ERV1|HERVH-int	-	chr10	101186121	101191553	STRG.42525.1	+	101186121,101191070,101191309	101186164,101191212,101191553	0.500000
suprapubic_skin_male_adult_37_years	chr7	150323750	150323751	150323750	-	High_confidence	5	5	7	0.584997	2.521641	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	1.000000
suprapubic_skin_male_adult_37_years	chr2	55618850	55618903	55618850	-	High_confidence	2	2	11	0.919281	2.921928	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55618104	55618865	STRG.8435.1	-	55618104	55618865	0.636364
suprapubic_skin_male_adult_37_years	chr14	91462162	91462224	91462186	-	High_confidence	5	5	27	2.256418	3.653661	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.925926
suprapubic_skin_male_adult_37_years	chr1	154975497	154975525	154975524	+	High_confidence	12	12	29	2.423560	3.978334	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.896552
suprapubic_skin_male_adult_37_years	chr1	179273212	179273213	179273212	+	RAMPAGE_only	35	35	44	3.677125	4.697846	chr1	179273172	179273276	LINE|L2|L2c	-	chr1	179293713	179358680	SOAT1|NM_003101.5	+	179293713,179302676,179323436,179335505,179337836,179339437,179341027,179342113,179342861,179343589,179344946,179347599,179348843,179350295,179351316,179353584	179293936,179302802,179323495,179335657,179337896,179339545,179341310,179342192,179342943,179343635,179345076,179347697,179348942,179350431,179351462,179358680	0.977273
suprapubic_skin_male_adult_37_years	chr12	46516618	46516619	46516618	+	High_confidence	11	11	13	1.086423	3.085055	chr12	46510152	46517361	LINE|L1|L1PA14	-	chr12	46516154	46517527	STRG.47874.1	+	46516154	46517527	0.615385
suprapubic_skin_male_adult_37_years	chr6	138034948	138034969	138034948	-	RAMPAGE_only	5	5	15	1.253565	3.182006	chr6	138034686	138034951	SINE|Alu|AluSc8	+	chr6	138015326	138015672	STRG.28239.1	-	138015326	138015672	0.733333
suprapubic_skin_male_adult_37_years	chr1	12356414	12356432	12356414	+	High_confidence	20	20	33	2.757844	2.679573	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12356350	12510346	VPS13D|ENST00000646411.1	+	12356350,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12356524,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	1.000000
suprapubic_skin_male_adult_37_years	chr12	29257473	29257474	29257473	+	High_confidence	98	98	101	8.440673	5.252038	chr12	29256462	29257890	LTR|ERV1|LTR12C	+	chr12	29257490	29334072	STRG.47653.3	+	29257490,29270411,29293299,29297020,29307657,29309185,29311027,29311882,29316840,29321794,29332599,29333631	29257901,29270638,29293475,29297200,29307835,29309230,29311146,29311950,29317012,29321924,29332727,29334072	0.940594
suprapubic_skin_male_adult_37_years	chr11	123060135	123060256	123060255	-	High_confidence	25	25	190	15.878494	5.484948	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.594737
suprapubic_skin_male_adult_37_years	chr5	67646810	67646811	67646810	-	High_confidence	9	11	11	0.919281	3.277613	chr5	67646558	67646761	SINE|MIR|MIRc	-	chr5	67632304	67646798	STRG.22497.1	-	67632304,67634306,67646605	67633335,67634395,67646798	0.636364
suprapubic_skin_male_adult_37_years	chr15	33194708	33194726	33194708	-	High_confidence	10	10	48	4.011409	4.245530	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.958333
suprapubic_skin_male_adult_37_years	chr1	85054976	85054979	85054976	+	RAMPAGE_only	17	19	27	2.256418	3.561607	chr1	85054781	85055152	LTR|ERVL-MaLR|THE1D	+	chr1	85062297	85133138	WDR63|NM_001288563.1	+	85062297,85071927,85073053,85081233,85082299,85084545,85085830,85093457,85094430,85095930,85097568,85098529,85104523,85108032,85110047,85117728,85121750,85124120,85126510,85128707,85129989,85132854	85062486,85072005,85073092,85081415,85082404,85084695,85086030,85093648,85094555,85096020,85097655,85098658,85104597,85108177,85110135,85117859,85121814,85124251,85126715,85128799,85130112,85133138	0.925926
suprapubic_skin_male_adult_37_years	chr10	14877038	14877071	14877062	+	RAMPAGE_only	5	9	31	2.590702	4.237291	chr10	14876839	14877141	LINE|L2|L2	-	chr10	14878782	14904315	SUV39H2|NM_001193424.1	+	14878782,14881499,14896845,14899538,14901132,14902405	14878919,14881645,14897517,14899685,14901262,14904315	0.838710
suprapubic_skin_male_adult_37_years	chr13	60410080	60410081	60410080	+	RAMPAGE_only	10	10	10	0.835710	2.646439	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60397830	60573864	TDRD3|ENST00000648252.1	+	60397830,60400255,60402717,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573615	60398631,60400292,60402815,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573864	1.000000
suprapubic_skin_male_adult_37_years	chr2	156254917	156254963	156254935	-	High_confidence	6	8	29	2.423560	4.487123	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156254520	156254983	STRG.11032.1	-	156254520	156254983	0.517241
suprapubic_skin_male_adult_37_years	chr7	6044569	6044613	6044569	-	RAMPAGE_only	6	12	38	3.175699	3.401904	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6041152	6046437	EIF2AK1|ENST00000470168.1	-	6041152,6042932,6044561,6046070	6041219,6042993,6044661,6046437	0.789474
suprapubic_skin_male_adult_37_years	chr1	32768074	32768079	32768074	+	RAMPAGE_only	2	2	6	0.501426	2.584963	chr1	32768079	32768253	SINE|MIR|MIR3	+	chr1	32765666	32774970	KIAA1522|ENST00000373480.1	+	32765666,32767786,32768061,32768651,32769672,32769879,32772864	32765827,32767957,32768117,32768775,32769786,32772441,32774970	1.000000
suprapubic_skin_male_adult_37_years	chr14	67478665	67478701	67478665	-	RAMPAGE_only	9	10	20	1.671420	3.932138	chr14	67478346	67478698	LINE|L2|L2c	+	chr14	67470265	67515304	TMEM229B|NM_182526.2	-	67470265,67486999,67515085	67473941,67487172,67515304	0.650000
suprapubic_skin_male_adult_37_years	chr5	173746116	173746177	173746176	-	High_confidence	4	5	13	1.086423	3.084963	chr5	173745880	173746596	LTR|ERV1|MER4A	+	chr5	173719245	173746211	LINC01484|ENST00000518902.1	-	173719245,173746019	173719543,173746211	0.769231
suprapubic_skin_male_adult_37_years	chr15	89333772	89333775	89333774	-	High_confidence	4	6	8	0.668568	2.521641	chr15	89333757	89333941	SINE|MIR|MIRc	+	chr15	89330207	89333809	POLG|ENST00000650303.1	-	89330207,89333095	89330276,89333809	0.875000
suprapubic_skin_male_adult_37_years	chr18	39800293	39800314	39800313	-	High_confidence	5	5	23	1.922134	3.689704	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.608696
suprapubic_skin_male_adult_37_years	chr17	47067498	47067534	47067512	-	High_confidence	36	61	222	18.552767	5.651323	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.927928
suprapubic_skin_male_adult_37_years	chr1	12572738	12572790	12572789	-	RAMPAGE_only	2	2	8	0.668568	2.750000	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	1.000000
suprapubic_skin_male_adult_37_years	chr19	46180792	46180793	46180792	-	High_confidence	4	4	7	0.584997	2.521641	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46163892	46180647	AC006262.2|ENST00000599127.1	-	46163892,46164577,46173933,46179485,46180604	46164216,46164651,46174052,46179537,46180647	0.857143
suprapubic_skin_male_adult_37_years	chr7	132590530	132590558	132590557	-	RAMPAGE_only	2	2	6	0.501426	2.584963	chr7	132590316	132590835	LTR|ERVL|MLT2A2	-	chr7	132123340	132577301	PLXNA4|ENST00000359827.7	-	132123340,132133048,132140598,132145118,132146509,132147899,132148542,132159472,132164141,132165133,132168303,132174777,132179686,132180585,132181380,132182096,132185298,132187470,132194061,132198484,132202645,132203322,132210942,132223526,132226160,132227450,132228345,132241065,132298090,132489291,132507505,132576421	132130574,132133199,132140811,132145288,132146700,132147999,132148646,132159632,132164288,132165200,132168572,132174920,132179921,132180732,132181620,132182190,132185463,132187607,132194179,132198636,132202836,132203419,132211143,132223641,132226260,132227604,132228469,132241166,132298222,132489474,132508776,132577301	0.833333
suprapubic_skin_male_adult_37_years	chr10	92542522	92542549	92542538	-	RAMPAGE_only	6	6	24	2.005705	2.845351	chr10	92542464	92542589	SINE|Alu|AluJb	-	chr10	92510132	92541353	IDE|ENST00000436178.1	-	92510132,92514919,92531747,92534577,92537365,92541297	92510162,92515042,92531917,92534785,92537550,92541353	0.791667
suprapubic_skin_male_adult_37_years	chr13	109272202	109272203	109272202	+	RAMPAGE_only	4	4	7	0.584997	2.584963	chr13	109271794	109272374	LTR|ERV1|LTR9	+	chr13	109269633	109273838	AL161431.1|ENST00000618966.1	+	109269633	109273838	0.571429
suprapubic_skin_male_adult_37_years	chr14	73567616	73567617	73567616	+	High_confidence	85	85	91	7.604963	5.322438	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.956044
suprapubic_skin_male_adult_37_years	chr3	50484122	50484146	50484145	-	RAMPAGE_only	6	6	12	1.002852	3.277613	chr3	50483973	50484750	LINE|L2|L2a	+	chr3	50362798	50503423	CACNA2D2|ENST00000423994.6	-	50362798,50364887,50365074,50365355,50365632,50365809,50366010,50366266,50366577,50366830,50367010,50367393,50367641,50367811,50368137,50370319,50373064,50374736,50375643,50375808,50375962,50376113,50377466,50377731,50378007,50378283,50378914,50379091,50379431,50379724,50379967,50380747,50380994,50384195,50387567,50394108,50434312,50476117,50503217	50364806,50364976,50365184,50365482,50365688,50365862,50366163,50366338,50366628,50366919,50367109,50367497,50367704,50367902,50368235,50370380,50373085,50374813,50375705,50375880,50376034,50376188,50377541,50377803,50378097,50378333,50378993,50379199,50379590,50379824,50380018,50380805,50381126,50384337,50387612,50394168,50434429,50476199,50503423	0.666667
suprapubic_skin_male_adult_37_years	chr19	46180850	46180868	46180862	-	High_confidence	155	157	534	44.626926	5.961755	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46163892	46180647	AC006262.2|ENST00000599127.1	-	46163892,46164577,46173933,46179485,46180604	46164216,46164651,46174052,46179537,46180647	0.676030
suprapubic_skin_male_adult_37_years	chr11	47214671	47214672	47214671	+	High_confidence	4	4	7	0.584997	2.521641	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214569	47234653	DDB2|ENST00000614825.4	+	47214569,47215072,47216335,47216857,47232813,47234572	47214674,47215263,47216472,47217049,47232959,47234653	1.000000
suprapubic_skin_male_adult_37_years	chr11	120126106	120126220	120126106	-	High_confidence	22	22	102	8.524244	5.088801	chr11	120125991	120126114	SINE|MIR|MIR3	+	chr11	120122951	120126357	TRIM29|ENST00000530470.1	-	120122951,120125690	120123055,120126357	0.823529
suprapubic_skin_male_adult_37_years	chr19	20750334	20750368	20750367	-	RAMPAGE_only	9	9	34	2.841415	4.322757	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746922	20755250	AC010329.1|ENST00000593903.1	-	20746922	20755250	1.000000
suprapubic_skin_male_adult_37_years	chr3	193614849	193614938	193614879	+	High_confidence	3	4	16	1.337136	3.272906	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.687500
suprapubic_skin_male_adult_37_years	chr20	50267433	50267475	50267474	+	High_confidence	4	4	10	0.835710	2.725481	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.900000
suprapubic_skin_male_adult_37_years	chr8	26366349	26366396	26366395	+	RAMPAGE_only	8	8	32	2.674273	3.527518	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	1.000000
suprapubic_skin_male_adult_37_years	chr18	63587325	63587346	63587342	+	High_confidence	18	18	62	5.181403	5.151383	chr18	63587176	63587346	DNA|hAT-Charlie|MER5B	-	chr18	63587365	63599199	SERPINB13|ENST00000344731.9	+	63587365,63588650,63589655,63592347,63592853,63594354,63595028,63596958	63587450,63588832,63589715,63592476,63592971,63594497,63595184,63599199	0.790323
suprapubic_skin_male_adult_37_years	chr9	92117507	92117508	92117507	-	RAMPAGE_only	18	19	19	1.587849	3.836592	chr9	92117187	92117818	LTR|ERV1|LTR9A1	+	chr9	92031133	92115474	SPTLC1|NM_006415.3	-	92031133,92034809,92038247,92045998,92047171,92047612,92049959,92055404,92059178,92067965,92080015,92080869,92108739,92112454,92115313	92032558,92034883,92038365,92046053,92047268,92047708,92050067,92055494,92059308,92068098,92080088,92080963,92108834,92112562,92115474	0.894737
suprapubic_skin_male_adult_37_years	chr3	11225885	11225933	11225885	-	High_confidence	2	3	12	1.002852	3.022055	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.666667
suprapubic_skin_male_adult_37_years	chr4	156542822	156542861	156542860	-	High_confidence	22	22	44	3.677125	4.362507	chr4	156542495	156543032	LTR|ERVL|MLT2A2	-	chr4	156513758	156542887	STRG.21044.1	-	156513758,156542580	156513872,156542887	0.522727
suprapubic_skin_male_adult_37_years	chr14	81170408	81170423	81170412	-	High_confidence	13	26	61	5.097832	4.658256	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.950820
suprapubic_skin_male_adult_37_years	chr22	46626116	46626126	46626125	+	High_confidence	4	4	10	0.835710	2.947703	chr22	46625971	46626148	LINE|L2|L2b	-	chr22	46626760	46679790	GRAMD4|ENST00000361034.7	+	46626760,46637839,46658186,46661380,46663039,46663837,46664025,46665614,46666824,46668095,46668688,46668798,46672842,46673669,46674656,46675467,46676599,46677146	46626961,46637960,46658307,46661442,46663172,46663863,46664117,46665706,46666873,46668167,46668732,46668908,46672997,46673814,46674750,46675552,46676668,46679790	0.900000
suprapubic_skin_male_adult_37_years	chr4	156542897	156542918	156542903	-	High_confidence	22	25	45	3.760696	4.613858	chr4	156542495	156543032	LTR|ERVL|MLT2A2	-	chr4	156513758	156542887	STRG.21044.1	-	156513758,156542580	156513872,156542887	0.577778
suprapubic_skin_male_adult_37_years	chr5	119420434	119420441	119420440	+	RAMPAGE_only	11	12	22	1.838563	4.021928	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.818182
suprapubic_skin_male_adult_37_years	chr15	68284838	68284890	68284889	+	RAMPAGE_only	9	17	69	5.766401	4.024309	chr15	68284715	68285060	LTR|ERVL-MaLR|THE1B	+	chr15	68289254	68290073	FEM1B|ENST00000566739.1	+	68289254,68289606	68289361,68290073	0.869565
suprapubic_skin_male_adult_37_years	chr20	34534449	34534495	34534491	+	RAMPAGE_only	36	42	164	13.705648	4.630857	chr20	34534306	34534522	SINE|MIR|MIRb	+	chr20	34516454	34540958	DYNLRB1|ENST00000374846.3	+	34516454,34526267,34534627,34540580	34516876,34526343,34534795,34540958	0.963415
suprapubic_skin_male_adult_37_years	chr13	19239626	19239643	19239642	-	RAMPAGE_only	7	7	18	1.504278	3.381580	chr13	19239586	19239800	LTR|ERVL-MaLR|MLT1F	-	chr13	19201636	19227432	PSPC1P1|ENST00000442352.1	-	19201636,19204339,19208482,19219709,19227247	19201822,19204509,19208540,19219775,19227432	0.944444
suprapubic_skin_male_adult_37_years	chr9	37603107	37603119	37603107	+	High_confidence	8	8	17	1.420707	2.933955	chr9	37603152	37603302	SINE|MIR|MIR3	+	chr9	37603009	37623544	STRG.37553.3	+	37603009,37623239	37603339,37623544	0.764706
suprapubic_skin_male_adult_37_years	chr3	129488244	129488295	129488244	+	High_confidence	5	5	21	1.754991	3.241446	chr3	129488271	129488306	SINE|5S-Deu-L2|AmnSINE1	+	chr3	129487505	129520355	IFT122|ENST00000511425.5	+	129487505,129488256,129492140,129499901,129502710,129504318,129506408,129507667,129512311,129514388,129515487,129517468,129519106,129519567,129520175	129487927,129488397,129492194,129500068,129502882,129504421,129506549,129507762,129512412,129514554,129515599,129517594,129519186,129519732,129520355	0.904762
suprapubic_skin_male_adult_37_years	chr2	159428354	159428357	159428356	-	RAMPAGE_only	5	8	11	0.919281	2.921928	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159400598	159419867	BAZ2B|ENST00000482501.5	-	159400598,159404848,159405021,159412334,159419779	159400664,159404910,159405114,159412545,159419867	0.909091
suprapubic_skin_male_adult_37_years	chr17	8105266	8105267	8105266	-	RAMPAGE_only	5	6	8	0.668568	2.521641	chr17	8105088	8105633	LINE|L2|L2a	+	chr17	8096248	8103515	ALOXE3|ENST00000583808.1	-	8096248,8103322	8096806,8103515	0.875000
suprapubic_skin_male_adult_37_years	chr2	113117907	113117971	113117970	+	High_confidence	281	349	2066	172.657734	6.911299	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.911907
suprapubic_skin_male_adult_37_years	chr17	4143196	4143218	4143199	+	High_confidence	28	31	96	8.022818	5.559489	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.989583
suprapubic_skin_male_adult_37_years	chr1	155343313	155343322	155343321	-	RAMPAGE_only	10	10	17	1.420707	3.175123	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
suprapubic_skin_male_adult_37_years	chr7	55207557	55207635	55207634	+	RAMPAGE_only	4	7	22	1.838563	3.975418	chr7	55207372	55207669	LINE|L2|L2c	-	chr7	55019100	55211628	EGFR|ENST00000275493.6	+	55019100,55142285,55143304,55146605,55151293,55152545,55154010,55155829,55156532,55156758,55157662,55160138,55161498,55163732,55165279,55171174,55172982,55173920,55174721,55181292,55191718,55192765,55198716,55200315,55201187,55201734,55202516,55205255	55019365,55142437,55143488,55146740,55151362,55152664,55154152,55155946,55156659,55156832,55157753,55160338,55161631,55163823,55165437,55171213,55173124,55174043,55174820,55181478,55191874,55192841,55198863,55200413,55201355,55201782,55202625,55211628	0.954545
suprapubic_skin_male_adult_37_years	chr12	55930641	55930642	55930641	+	High_confidence	11	11	11	0.919281	3.095795	chr12	55930357	55930665	SINE|Alu|AluSc8	-	chr12	55930427	55936567	DGKA|ENST00000547015.5	+	55930427,55931163,55936422	55930643,55931344,55936567	0.636364
suprapubic_skin_male_adult_37_years	chr8	8177044	8177048	8177047	+	High_confidence	11	11	21	1.754991	3.826875	chr8	8172260	8180087	LTR|ERV1|HERVE-int	+	chr8	8177029	8180459	STRG.33784.1	+	8177029,8177754	8177178,8180459	0.666667
suprapubic_skin_male_adult_37_years	chr1	212232457	212232458	212232457	-	RAMPAGE_only	7	7	11	0.919281	3.095795	chr1	212232282	212232732	LTR|ERVL|MLT2A2	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	1.000000
suprapubic_skin_male_adult_37_years	chr2	201115997	201116024	201116023	+	High_confidence	7	7	26	2.172847	3.950064	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.923077
suprapubic_skin_male_adult_37_years	chr3	11226025	11226047	11226025	+	High_confidence	5	5	13	1.086423	2.719295	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.846154
suprapubic_skin_male_adult_37_years	chr16	63618045	63618046	63618045	-	High_confidence	65	84	89	7.437821	5.289589	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.752809
suprapubic_skin_male_adult_37_years	chr1	88887267	88887341	88887267	-	RAMPAGE_only	3	3	32	2.674273	3.923231	chr1	88886926	88887218	SINE|Alu|AluSx1	-	chr1	88853223	88891496	GTF2B|ENST00000448623.5	-	88853223,88857372,88859881,88860139,88863980,88887260,88891482	88853346,88857487,88860011,88860286,88864114,88887367,88891496	0.937500
suprapubic_skin_male_adult_37_years	chr5	150498207	150498221	150498216	+	High_confidence	5	5	14	1.169994	3.546594	chr5	150498149	150498389	SINE|MIR|MIR	+	chr5	150497777	150558211	NDST1|NM_001301063.1	+	150497777,150520867,150527803,150532944,150534866,150535699,150539227,150540081,150541569,150542847,150545311,150549677,150551752,150553212	150497979,150521767,150528298,150533032,150535021,150535885,150539356,150540264,150541666,150542971,150545486,150549787,150551855,150558211	0.928571
suprapubic_skin_male_adult_37_years	chr7	64949266	64949293	64949266	+	RAMPAGE_only	1	1	7	0.584997	2.584963	chr7	64948006	64950297	LTR|ERVK|HERVK9-int	+	chr7	64947700	64950724	STRG.30604.1	+	64947700,64949115,64950203	64947857,64949409,64950724	0.857143
suprapubic_skin_male_adult_37_years	chr3	69237171	69237186	69237171	-	High_confidence	6	8	30	2.507131	4.323161	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69170806	69237890	STRG.15254.1	-	69170806,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69195230,69196254,69196899,69198697,69216262,69218321,69221857,69224606,69237096	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195141,69195364,69196396,69197038,69198774,69216349,69218379,69221923,69224690,69237890	0.733333
suprapubic_skin_male_adult_37_years	chr4	24966463	24966464	24966463	+	High_confidence	28	29	37	3.092128	4.204582	chr4	24966131	24971357	LTR|ERVL|HERVL18-int	+	chr4	24966473	24969724	STRG.18778.1	+	24966473,24967751,24969576	24966649,24967871,24969724	0.864865
suprapubic_skin_male_adult_37_years	chr12	883795	883830	883829	+	RAMPAGE_only	10	15	65	5.432117	4.908466	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	752922	911451	WNK1|ENST00000530271.6	+	752922,813641,827041,830002,857160,859244,861012,862082,867865,871264,878211,879572,880720,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,901560,904452,907846,908474	754324,813814,827262,830160,857249,859464,861343,862270,869104,871348,878361,880031,880999,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,901632,904494,908034,911451	1.000000
suprapubic_skin_male_adult_37_years	chr4	102829374	102829399	102829374	+	High_confidence	4	4	8	0.668568	2.500000	chr4	102829383	102829610	SINE|MIR|MIRc	+	chr4	102829313	102844106	LOC105377348|NR_131185.1	+	102829313,102840708,102843323	102829499,102840783,102844106	1.000000
suprapubic_skin_male_adult_37_years	chr4	86896653	86896681	86896653	-	RAMPAGE_only	8	11	34	2.841415	4.127283	chr4	86896647	86896934	LINE|L2|L2	+	chr4	86876204	86892422	C4orf36|NM_144645.3	-	86876204,86887757,86888120,86891455,86892182	86876443,86887893,86888275,86891593,86892422	0.647059
suprapubic_skin_male_adult_37_years	chr1	209429204	209429330	209429209	+	High_confidence	15	15	105	8.774957	5.569650	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.571429
suprapubic_skin_male_adult_37_years	chr1	179294641	179294642	179294641	+	High_confidence	10	11	13	1.086423	3.084963	chr1	179294538	179294832	SINE|Alu|AluSz	-	chr1	179294400	179342944	STRG.5092.4	+	179294400,179302676,179323436,179335505,179337836,179339437,179341027,179342113,179342861	179294401,179302802,179323495,179335657,179337896,179339545,179341310,179342192,179342944	0.923077
suprapubic_skin_male_adult_37_years	chr10	86974720	86974722	86974720	-	High_confidence	3	5	8	0.668568	2.521641	chr10	86974596	86974877	LINE|L1|L1M7	-	chr10	86965738	86974105	STRG.41972.6	-	86965738,86969041,86972923	86966103,86972505,86974105	0.625000
suprapubic_skin_male_adult_37_years	chr11	7905910	7905926	7905925	-	High_confidence	15	16	28	2.339989	4.356558	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7699561	7905953	STRG.43647.12	-	7699561,7701323,7701715,7702156,7703598,7704564,7879006,7879594,7881088,7881955,7882859,7905602	7700485,7701475,7701811,7702329,7703789,7704674,7879083,7879713,7881149,7882073,7882933,7905953	0.714286
suprapubic_skin_male_adult_37_years	chr14	104967046	104967089	104967046	-	RAMPAGE_only	4	4	15	1.253565	2.985228	chr14	104966919	104967006	SINE|MIR|MIR3	-	chr14	104937243	104970481	AHNAK2|ENST00000555122.1	-	104937243,104955482,104956587,104957409,104957613,104970455	104955141,104955633,104956689,104957508,104957672,104970481	0.866667
suprapubic_skin_male_adult_37_years	chr3	53371324	53371325	53371324	-	High_confidence	21	23	26	2.172847	3.589275	chr3	53365276	53371325	LINE|L1|L1PA2	-	chr3	53370830	53371316	STRG.14971.1	-	53370830	53371316	0.500000
suprapubic_skin_male_adult_37_years	chr13	45206631	45206634	45206631	+	High_confidence	15	15	27	2.256418	3.912114	chr13	45206646	45206717	SINE|MIR|MIRb	+	chr13	45206354	45267333	GTF2F2|ENST00000494087.5	+	45206354,45252870,45267232	45207505,45252970,45267333	0.925926
suprapubic_skin_male_adult_37_years	chr12	46185942	46185985	46185984	-	RAMPAGE_only	3	3	11	0.919281	2.921928	chr12	46185953	46186190	DNA|TcMar-Tigger|Tigger16b	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.909091
suprapubic_skin_male_adult_37_years	chr7	107580245	107580267	107580264	+	High_confidence	490	493	2192	183.187683	6.503423	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.979015
suprapubic_skin_male_adult_37_years	chr11	105842353	105842374	105842353	+	High_confidence	3	3	7	0.584997	2.521641	chr11	105842025	105842553	LINE|L2|L2a	-	chr11	105842782	105903983	GRIA4|ENST00000527687.1	+	105842782,105862023,105887518,105898268,105903813	105842912,105862208,105887572,105898427,105903983	1.000000
suprapubic_skin_male_adult_37_years	chr20	45833307	45833310	45833307	-	High_confidence	5	6	9	0.752139	2.500000	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.777778
suprapubic_skin_male_adult_37_years	chr1	51403425	51403469	51403431	-	RAMPAGE_only	3	4	15	1.253565	2.896292	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.933333
suprapubic_skin_male_adult_37_years	chr12	643625	643636	643627	-	High_confidence	11	18	46	3.844267	4.516028	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.500000
suprapubic_skin_male_adult_37_years	chr7	6953922	6953962	6953961	-	High_confidence	12	12	34	2.841415	4.359378	chr7	6950904	6958745	LTR|ERV1|HERVE-int	-	chr7	6950545	6954458	STRG.29309.1	-	6950545,6953825	6953249,6954458	0.852941
suprapubic_skin_male_adult_37_years	chr17	7139215	7139223	7139215	-	RAMPAGE_only	63	65	117	9.777810	5.372562	chr17	7139009	7139390	LTR|ERVL-MaLR|MLT1A	-	chr17	7107838	7115700	ASGR2|ENST00000574868.1	-	7107838,7108461,7108771,7114116,7114614,7115053,7115640	7107907,7108557,7108888,7114310,7114811,7115522,7115700	0.777778
suprapubic_skin_male_adult_37_years	chr8	142353326	142353356	142353352	-	RAMPAGE_only	8	8	17	1.420707	3.452820	chr8	142353282	142353360	LINE|L2|L2c	+	chr8	142212166	142354763	TSNARE1|ENST00000520166.5	-	142212166,142229472,142274780,142284412,142300485,142314383,142315002,142318543,142330900,142331753,142343965,142345742,142354636	142212313,142229579,142274863,142284485,142300647,142314440,142315092,142318634,142330970,142331831,142344472,142345892,142354763	0.882353
suprapubic_skin_male_adult_37_years	chr19	39198244	39198249	39198248	+	RAMPAGE_only	10	10	21	1.754991	3.784184	chr19	39198261	39198457	SINE|MIR|MIRb	+	chr19	39196963	39201882	NCCRP1|NM_001001414.1	+	39196963,39198052,39198201,39199169,39200345,39200615	39197319,39198115,39198253,39199265,39200484,39201882	0.952381
suprapubic_skin_male_adult_37_years	chr20	45115985	45115997	45115996	-	High_confidence	7	9	14	1.169994	2.815072	chr20	45115930	45116060	SINE|MIR|MIR3	-	chr20	45109451	45116324	STRG.67446.1	-	45109451,45110399,45110634,45114998,45116173	45110013,45110540,45110775,45115525,45116324	0.928571
suprapubic_skin_male_adult_37_years	chr5	55851351	55851383	55851382	+	High_confidence	3	3	10	0.835710	2.921928	chr5	55851124	55851720	DNA|TcMar-Tigger|Tigger17a	-	chr5	55851378	55922854	IL31RA|NM_001242638.1	+	55851378,55852194,55853321,55859508,55868790,55872269,55883043,55889969,55896349,55899915,55906105,55907358,55908264,55910531,55913476,55914846,55916643,55922395	55851633,55852312,55853567,55859599,55868908,55872451,55883195,55890135,55896429,55900132,55906288,55907460,55908411,55910672,55913570,55914928,55916834,55922854	1.000000
suprapubic_skin_male_adult_37_years	chr12	121950281	121950292	121950291	+	RAMPAGE_only	4	4	9	0.752139	2.725481	chr12	121949929	121950482	LINE|L1|L1MB5	+	chr12	121952694	121959739	WDR66|ENST00000535257.1	+	121952694,121957073,121958271,121958942	121954334,121957268,121958522,121959739	0.888889
suprapubic_skin_male_adult_37_years	chr2	215294202	215294239	215294202	+	RAMPAGE_only	7	7	23	1.922134	3.795089	chr2	215293929	215294432	LTR|ERVL-MaLR|MLT1F1	-	chr2	215311816	215349763	ATIC|ENST00000236959.13	+	215311816,215312497,215318156,215319664,215325240,215325986,215326821,215332381,215333349,215334918,215336034,215338778,215344778,215346758,215349093,215349535	215312161,215312624,215318233,215319731,215325329,215326138,215326978,215332507,215333457,215335004,215336124,215338907,215344871,215346941,215349249,215349763	0.869565
suprapubic_skin_male_adult_37_years	chr17	61952970	61953006	61952981	-	RAMPAGE_only	7	7	19	1.587849	3.058814	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.947368
suprapubic_skin_male_adult_37_years	chr17	82081606	82081755	82081606	-	RAMPAGE_only	20	20	121	10.112094	5.289496	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	0.975207
suprapubic_skin_male_adult_37_years	chr17	13940701	13940702	13940701	-	RAMPAGE_only	6	6	8	0.668568	2.750000	chr17	13940368	13940765	LTR|ERVL-MaLR|MLT1J	-	chr17	13776831	13892839	COX10-AS1|ENST00000577798.6	-	13776831,13790268,13865078,13880301,13892724	13777349,13790313,13865266,13880371,13892839	0.750000
suprapubic_skin_male_adult_37_years	chr18	691411	691412	691411	-	RAMPAGE_only	7	7	7	0.584997	2.521641	chr18	691330	691629	SINE|Alu|AluJr	-	chr18	670323	693277	ENOSF1|ENST00000584259.6	-	670323,674160,675320,677344,677742,678695,683245,685920,688573,690548	673076,674406,675402,677444,677872,678737,683380,686008,688608,693277	1.000000
suprapubic_skin_male_adult_37_years	chr10	47743701	47743747	47743701	+	High_confidence	5	5	30	2.507131	4.186569	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.866667
suprapubic_skin_male_adult_37_years	chr4	174554994	174554996	174554994	+	High_confidence	36	60	62	5.181403	4.938453	chr4	174554772	174555189	LTR|ERV1|LTR12B	+	chr4	174555013	174562228	STRG.21343.1	+	174555013,174559631	174555214,174562228	0.919355
suprapubic_skin_male_adult_37_years	chr1	178309956	178309961	178309956	+	RAMPAGE_only	8	8	16	1.337136	3.323231	chr1	178309765	178310059	DNA|TcMar-Tigger|Tigger9b	-	chr1	178299440	178444847	STRG.5061.4	+	178299440,178299991,178390099,178420510,178439421,178441548,178442674	178299830,178300118,178390206,178420620,178439575,178441647,178444847	0.875000
suprapubic_skin_male_adult_37_years	chr19	55280199	55280232	55280231	-	High_confidence	4	4	10	0.835710	2.725481	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.900000
suprapubic_skin_male_adult_37_years	chr1	45522855	45522859	45522858	-	High_confidence	34	34	50	4.178551	4.851663	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	1.000000
suprapubic_skin_male_adult_37_years	chr8	39032698	39032749	39032736	+	High_confidence	12	12	96	8.022818	5.660025	chr8	39031444	39032803	LINE|L1|L1P2	-	chr8	39032705	39056009	STRG.34456.7	+	39032705,39041945,39054480,39055576	39032836,39042117,39054573,39056009	0.625000
suprapubic_skin_male_adult_37_years	chr19	3062922	3062940	3062922	-	High_confidence	18	20	62	5.181403	4.657061	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.983871
suprapubic_skin_male_adult_37_years	chr22	25032338	25032379	25032378	+	High_confidence	19	19	58	4.847119	5.076409	chr22	25032214	25032434	SINE|MIR|MIRc	-	chr22	25032355	25197399	STRG.69429.3	+	25032355,25032608,25038759,25049229,25170819,25174239,25177347,25181698,25184976,25190701,25192405	25032455,25032696,25041525,25049364,25170938,25174489,25177522,25181823,25185119,25190784,25197399	0.982759
suprapubic_skin_male_adult_37_years	chr2	240022225	240022249	240022225	-	RAMPAGE_only	3	3	11	0.919281	3.277613	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
suprapubic_skin_male_adult_37_years	chr7	7929745	7929760	7929759	+	RAMPAGE_only	7	7	25	2.089276	4.220176	chr7	7929292	7929826	LINE|L2|L2a	-	chr7	7968742	8089080	GLCCI1|NM_138426.3	+	7968742,8003907,8022482,8055432,8060095,8070920,8084896,8086192	7969807,8004059,8022569,8055549,8060248,8071131,8085017,8089080	0.760000
suprapubic_skin_male_adult_37_years	chr2	38121992	38121993	38121992	+	RAMPAGE_only	4	4	7	0.584997	2.521641	chr2	38122010	38122130	SINE|MIR|MIR3	+	chr2	38131104	38181855	CYP1B1-AS1|NR_027252.1	+	38131104,38131510,38180288	38131190,38131614,38181855	0.571429
suprapubic_skin_male_adult_37_years	chr9	128921399	128921413	128921399	+	High_confidence	13	13	24	2.005705	3.740602	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	1.000000
suprapubic_skin_male_adult_37_years	chr7	80539387	80539390	80539389	+	High_confidence	8	14	18	1.504278	3.572431	chr7	80539429	80539736	SINE|Alu|AluYa5	+	chr7	80539396	80656683	STRG.31278.15	+	80539396,80646087,80646651,80656539	80539528,80646181,80646860,80656683	0.611111
suprapubic_skin_male_adult_37_years	chr5	12490214	12490231	12490230	+	High_confidence	23	24	35	2.924986	4.218589	chr5	12490211	12490322	LTR|ERV1|LTR7Y	+	chr5	12490226	12490571	STRG.21718.1	+	12490226	12490571	0.714286
suprapubic_skin_male_adult_37_years	chr19	48868595	48868631	48868613	-	High_confidence	56	63	205	17.132060	6.453765	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	1.000000
suprapubic_skin_male_adult_37_years	chr5	34244753	34244779	34244753	-	High_confidence	9	9	24	2.005705	3.762267	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.666667
suprapubic_skin_male_adult_37_years	chr10	102449836	102449840	102449836	+	High_confidence	17	17	33	2.757844	3.840018	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.969697
suprapubic_skin_male_adult_37_years	chr14	31247597	31247621	31247620	+	RAMPAGE_only	12	12	27	2.256418	3.838040	chr14	31247584	31247734	LTR|ERV1|HERVH-int	-	chr14	31248627	31302739	AL136418.1|ENST00000551799.1	+	31248627,31262662,31272893,31279011,31295431,31302260	31248691,31262802,31272966,31279134,31295527,31302739	0.592593
suprapubic_skin_male_adult_37_years	chr7	64917069	64917086	64917085	+	RAMPAGE_only	4	4	11	0.919281	2.646439	chr7	64917079	64917228	DNA|hAT-Charlie|MER5A1	+	chr7	64903287	64930966	ZNF273|ENST00000395375.3	+	64903287,64917029,64917580,64918196,64927653	64903419,64917118,64917707,64918292,64930966	0.909091
suprapubic_skin_male_adult_37_years	chr3	24018910	24018931	24018910	+	High_confidence	4	5	12	1.002852	3.277613	chr3	24018754	24020004	LTR|ERV1|LTR2752	-	chr3	24018715	24189952	STRG.14083.1	+	24018715,24087924,24173783,24177949,24189574	24019269,24088061,24173904,24178012,24189952	0.750000
suprapubic_skin_male_adult_37_years	chr18	30991801	30991976	30991966	-	RAMPAGE_only	190	191	1020	85.242444	6.417696	chr18	30991883	30992175	SINE|Alu|AluY	+	chr18	30990007	31042741	DSC3|ENST00000360428.8	-	30990007,30996790,31001617,31004141,31006906,31008015,31008268,31018070,31018665,31022335,31024348,31025759,31029508,31030972,31032191,31042591	30994372,30997048,31001739,31004366,31007131,31008158,31008525,31018256,31018800,31022502,31024493,31025915,31029628,31031172,31032276,31042741	0.997059
suprapubic_skin_male_adult_37_years	chr11	75771003	75771028	75771021	+	RAMPAGE_only	33	39	106	8.858528	5.658114	chr11	75771043	75771145	LINE|CR1|L3	+	chr11	75769000	75800364	DGAT2|ENST00000604733.5	+	75769000,75790187,75790660,75796327,75797157,75798226,75800353	75769112,75790295,75790731,75796532,75797332,75798429,75800364	0.886792
suprapubic_skin_male_adult_37_years	chr16	20736868	20736883	20736882	-	RAMPAGE_only	5	5	10	0.835710	2.921928	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	0.800000
suprapubic_skin_male_adult_37_years	chr1	155038151	155038164	155038163	+	RAMPAGE_only	8	8	16	1.337136	3.189898	chr1	155038092	155038557	LINE|L2|L2a	-	chr1	155033969	155049264	DCST1|ENST00000368419.2	+	155033969,155034434,155034652,155039402,155040484,155041396,155041713,155042734,155043351,155045892,155046124,155046359,155047195,155047786,155048056,155048993	155034097,155034560,155034727,155039531,155040624,155041613,155041857,155042856,155043509,155045992,155046220,155046486,155047312,155047929,155048170,155049264	0.875000
suprapubic_skin_male_adult_37_years	chr8	27503119	27503122	27503119	+	RAMPAGE_only	12	12	28	2.339989	4.060262	chr8	27502947	27503314	LTR|ERVL-MaLR|MLT1A0	+	chr8	27492841	27503759	EPHX2|ENST00000523827.1	+	27492841,27500925,27503603	27493165,27501010,27503759	0.678571
suprapubic_skin_male_adult_37_years	chr4	89681503	89681505	89681504	+	RAMPAGE_only	51	76	94	7.855676	5.685567	chr4	89681260	89681677	LTR|ERV1|MER61C	+	chr4	89627783	89720172	AC097478.1|ENST00000507916.6	+	89627783,89691284,89719825	89627917,89691405,89720172	0.680851
suprapubic_skin_male_adult_37_years	chr9	129828005	129828031	129828005	-	RAMPAGE_only	4	4	8	0.668568	2.750000	chr9	129827771	129828092	SINE|Alu|AluSp	-	chr9	129827289	129835275	C9orf78|ENST00000372447.7	-	129827289,129829204,129829404,129830870,129831895,129833446,129833657,129834706,129835138	129828252,129829303,129829541,129831068,129831973,129833517,129833709,129834766,129835275	0.875000
suprapubic_skin_male_adult_37_years	chr19	35115804	35115898	35115834	+	High_confidence	8	8	69	5.766401	5.195857	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.869565
suprapubic_skin_male_adult_37_years	chr12	52183881	52183888	52183887	+	RAMPAGE_only	3	3	6	0.501426	2.584963	chr12	52183803	52183907	SINE|MIR|MIR3	+	chr12	52164114	52223800	LINC00592|ENST00000640420.1	+	52164114,52164800,52223445	52164376,52164951,52223800	1.000000
suprapubic_skin_male_adult_37_years	chr4	2936335	2936336	2936335	+	High_confidence	10	10	10	0.835710	2.721928	chr4	2935837	2936474	LTR|ERV1|LTR8	+	chr4	2935545	2951078	NOP14-AS1|NR_015453.2	+	2935545,2938692,2946872,2950152	2938142,2938792,2947120,2951078	1.000000
suprapubic_skin_male_adult_37_years	chr11	13051518	13051519	13051518	+	High_confidence	64	67	67	5.599259	5.055239	chr11	13051285	13051694	LTR|ERVL|LTR16A	+	chr11	13051533	13051897	STRG.43841.1	+	13051533	13051897	0.746269
suprapubic_skin_male_adult_37_years	chr5	21774217	21774229	21774217	+	High_confidence	3	4	9	0.752139	2.750000	chr5	21774041	21774592	LTR|ERVL|MLT2A2	+	chr5	21774187	21779562	STRG.21812.1	+	21774187,21779257	21774509,21779562	0.888889
suprapubic_skin_male_adult_37_years	chr9	128185577	128185578	128185577	-	RAMPAGE_only	7	7	10	0.835710	2.721928	chr9	128185400	128185541	SINE|MIR|MIR3	-	chr9	128166151	128190710	CIZ1|ENST00000415526.5	-	128166151,128166758,128167094,128169051,128169405,128170019,128176350,128177565,128178368,128178708,128180414,128180720,128185546,128190328,128190687	128166406,128166880,128167164,128169201,128169519,128170107,128176475,128177763,128178490,128179415,128180523,128180799,128185776,128190444,128190710	0.900000
suprapubic_skin_male_adult_37_years	chr15	67166512	67166531	67166512	+	High_confidence	6	6	15	1.253565	3.664498	chr15	67166449	67166543	LINE|L2|L2b	-	chr15	67166530	67181420	SMAD3|ENST00000558428.5	+	67166530,67170553,67181240	67166853,67170604,67181420	0.933333
suprapubic_skin_male_adult_37_years	chr2	15579973	15579974	15579973	+	RAMPAGE_only	5	6	7	0.584997	2.584963	chr2	15579443	15580174	LTR|ERVL|ERVL-B4-int	+	chr2	15591177	15631111	DDX1|ENST00000381341.6	+	15591177,15591653,15595144,15595489,15596733,15597374,15599668,15602547,15603191,15603813,15604436,15605949,15606149,15607174,15613223,15617243,15618180,15620207,15621064,15623435,15627053,15628444,15628637,15628796,15629601,15629989,15630775	15591286,15591949,15595196,15595553,15596763,15597471,15599716,15602631,15603275,15603890,15604509,15606026,15606264,15607313,15613284,15617342,15618270,15620396,15621116,15623582,15627145,15628517,15628710,15628839,15629697,15630110,15631111	0.714286
suprapubic_skin_male_adult_37_years	chr1	153967482	153967496	153967495	+	High_confidence	4	4	14	1.169994	2.931209	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.785714
suprapubic_skin_male_adult_37_years	chr3	9987106	9987165	9987152	+	High_confidence	4	4	16	1.337136	3.030639	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9987214	10003097	EMC3-AS1|ENST00000440568.1	+	9987214,9987814,9988711,10002716	9987264,9987905,9988747,10003097	0.687500
suprapubic_skin_male_adult_37_years	chr6	167271323	167271337	167271330	+	High_confidence	62	66	183	15.293497	6.461406	chr6	167271259	167271341	DNA|hAT-Charlie|MER5A	+	chr6	167271168	167296196	UNC93A|ENST00000503433.5	+	167271168,167291438,167294516,167296031	167271458,167291576,167294698,167296196	0.633880
suprapubic_skin_male_adult_37_years	chr1	43120113	43120148	43120134	+	RAMPAGE_only	15	16	111	9.276384	5.795127	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43145152	43156396	FAM183A|ENST00000410048.5	+	43145152,43150760,43152827,43156205	43145297,43150820,43152931,43156396	0.585586
suprapubic_skin_male_adult_37_years	chr11	34089408	34089440	34089439	+	High_confidence	7	7	38	3.175699	4.447703	chr11	34089484	34089623	SINE|Alu|AluJr	+	chr11	34090025	34101151	CAPRIN1|ENST00000533657.5	+	34090025,34090528,34091905,34096478,34097195,34097697,34099302	34090289,34090678,34092056,34096673,34097296,34097761,34101151	0.921053
suprapubic_skin_male_adult_37_years	chr1	33021390	33021417	33021416	-	RAMPAGE_only	5	5	10	0.835710	2.947703	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.900000
suprapubic_skin_male_adult_37_years	chr17	39964076	39964141	39964117	+	RAMPAGE_only	7	7	66	5.515688	5.260333	chr17	39963949	39964266	LINE|L2|L2c	-	chr17	39962972	39977766	GSDMA|NM_178171.4	+	39962972,39965682,39966259,39970481,39971523,39972128,39972586,39973809,39974272,39974899,39975923,39976815	39963085,39965901,39966437,39970647,39971620,39972176,39972613,39973830,39974427,39975014,39975997,39977766	0.681818
suprapubic_skin_male_adult_37_years	chr10	101368219	101368234	101368219	+	RAMPAGE_only	12	13	30	2.507131	3.506357	chr10	101368004	101368435	LTR|ERVL-MaLR|MSTB1	+	chr10	101354533	101526083	BTRC|ENST00000370183.2	+	101354533,101430344,101461980,101479367,101521638,101526012	101354609,101430452,101462058,101479457,101521870,101526083	0.600000
suprapubic_skin_male_adult_37_years	chr3	14047155	14047197	14047155	-	RAMPAGE_only	9	9	21	1.754991	3.784184	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14040209	14043228	STRG.13832.1	-	14040209,14043205	14041628,14043228	0.761905
suprapubic_skin_male_adult_37_years	chr11	66000071	66000079	66000071	-	High_confidence	3	3	11	0.919281	2.845351	chr11	66000000	66000046	SINE|Alu|AluJo	-	chr11	65998613	66000482	EIF1AD|ENST00000529973.1	-	65998613,65999349,65999566,66000098,66000302	65998743,65999397,65999675,66000161,66000482	0.909091
suprapubic_skin_male_adult_37_years	chr7	87040214	87040223	87040214	-	RAMPAGE_only	4	5	14	1.169994	3.182006	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86879938	87059631	KIAA1324L|ENST00000444627.5	-	86879938,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87059324	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912171,86913065,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87059631	0.500000
suprapubic_skin_male_adult_37_years	chr14	105016031	105016043	105016042	-	RAMPAGE_only	9	9	17	1.420707	3.616875	chr14	105015959	105016174	LTR|ERV1|MER89	+	chr14	105009935	105021060	CDCA4|ENST00000392590.3	-	105009935,105011159,105020998	105010633,105011935,105021060	0.764706
suprapubic_skin_male_adult_37_years	chr3	134485443	134485494	134485443	-	High_confidence	5	5	23	1.922134	4.061482	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.913043
suprapubic_skin_male_adult_37_years	chr19	24042383	24042384	24042383	+	High_confidence	126	128	132	11.031375	5.098967	chr19	24041131	24042696	LTR|ERV1|LTR12C	+	chr19	24042351	24042859	STRG.64674.12	+	24042351	24042859	0.810606
suprapubic_skin_male_adult_37_years	chr13	48580933	48580938	48580937	-	High_confidence	14	14	27	2.256418	4.310443	chr13	48580763	48581196	LTR|ERVL-MaLR|THE1B	-	chr13	48576842	48580908	STRG.50624.1	-	48576842,48580840	48577859,48580908	0.962963
suprapubic_skin_male_adult_37_years	chr9	20658592	20658624	20658592	+	High_confidence	2	2	14	1.169994	3.182006	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658314	20770112	STRG.37158.4	+	20658314,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.642857
suprapubic_skin_male_adult_37_years	chr2	71139665	71139711	71139665	+	RAMPAGE_only	3	3	12	1.002852	2.855389	chr2	71139578	71139748	DNA|hAT-Charlie|MER5A	-	chr2	71130313	71150102	MPHOSPH10|NM_005791.2	+	71130313,71132897,71133947,71134625,71138489,71139794,71141231,71144427,71147998,71149222,71149865	71130754,71133576,71134105,71134797,71138631,71139862,71141369,71144538,71148106,71149453,71150102	0.916667
suprapubic_skin_male_adult_37_years	chr10	86555953	86555960	86555959	-	RAMPAGE_only	36	36	89	7.437821	4.645343	chr10	86555850	86556090	LTR|ERVL-MaLR|MLT1G3	-	chr10	86550325	86564631	STRG.41956.1	-	86550325,86553757,86555747,86557145,86564424	86550378,86553849,86556717,86557251,86564631	0.865169
suprapubic_skin_male_adult_37_years	chr11	118241598	118241619	118241616	-	RAMPAGE_only	18	22	71	5.933543	4.928724	chr11	118241373	118241624	SINE|MIR|MIR	+	chr11	118229453	118252320	MPZL3|ENST00000446386.2	-	118229453,118233459,118235423,118240210,118252221	118229920,118233523,118235589,118240377,118252320	0.521127
suprapubic_skin_male_adult_37_years	chr4	86453190	86453207	86453194	-	High_confidence	2	2	11	0.919281	2.721928	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016074	86453196	MAPK10|ENST00000641854.1	-	86016074,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86107352,86159467,86194407,86354644,86453196	0.636364
suprapubic_skin_male_adult_37_years	chr16	4355592	4355593	4355592	-	High_confidence	18	18	18	1.504278	3.308271	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	1.000000
suprapubic_skin_male_adult_37_years	chr3	14017455	14017488	14017486	+	High_confidence	14	21	57	4.763548	5.217368	chr3	14012549	14017955	LINE|L1|L1PB1	-	chr3	14017552	14065984	TPRXL|ENST00000429201.6	+	14017552,14057137,14063378,14064019	14017665,14057184,14063508,14065984	0.719298
suprapubic_skin_male_adult_37_years	chr10	60657169	60657180	60657179	-	RAMPAGE_only	4	4	11	0.919281	3.095795	chr10	60656961	60657332	LTR|ERVL-MaLR|THE1B	-	chr10	60028400	60733490	ANK3|ENST00000373827.6	-	60028400,60042671,60055657,60059339,60059697,60063110,60064156,60067934,60080536,60082614,60083491,60084601,60085156,60086676,60088146,60105904,60108829,60114224,60134270,60138963,60166590,60166823,60172307,60172899,60173087,60181328,60186714,60196144,60196526,60198339,60200128,60203001,60205791,60208035,60213411,60234687,60261858,60263834,60270130,60278773,60279049,60279537,60615185,60733262	60029826,60042759,60056036,60059430,60060006,60063254,60064288,60068009,60080618,60082737,60083617,60084830,60085253,60086884,60088358,60106059,60109054,60114331,60134373,60139087,60166653,60166896,60172403,60172998,60173186,60181427,60186912,60196243,60196625,60198537,60200227,60203100,60205890,60208233,60213510,60234786,60261957,60264020,60270229,60278872,60279148,60279639,60615224,60733490	0.636364
suprapubic_skin_male_adult_37_years	chr5	67064143	67064159	67064143	+	RAMPAGE_only	6	6	11	0.919281	2.845351	chr5	67063782	67064326	LINE|L2|L2	-	chr5	67004751	67104575	MAST4|ENST00000447738.1	+	67004751,67054403,67090161,67095596,67100434,67102506,67104365	67005085,67054492,67090231,67095675,67100592,67102611,67104575	0.636364
suprapubic_skin_male_adult_37_years	chrY	8299685	8299686	8299685	+	High_confidence	423	423	428	35.768398	6.038416	chrY	8298435	8300101	LTR|ERV1|LTR12C	+	chrY	8299703	8313119	STRG.73146.1	+	8299703,8312421,8313085	8300144,8312530,8313119	0.950935
suprapubic_skin_male_adult_37_years	chr17	28234007	28234062	28234042	-	RAMPAGE_only	8	8	56	4.679977	4.953909	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.982143
suprapubic_skin_male_adult_37_years	chr12	91179462	91179526	91179462	-	High_confidence	467	483	1793	149.842845	7.318569	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.534300
suprapubic_skin_male_adult_37_years	chr22	50757129	50757147	50757146	+	High_confidence	5	5	12	1.002852	2.732159	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.500000
suprapubic_skin_male_adult_37_years	chr9	107293806	107293827	107293826	+	RAMPAGE_only	5	5	12	1.002852	3.027169	chr9	107293792	107294014	SINE|Alu|AluJr	-	chr9	107284768	107332194	RAD23B|NM_001244713.1	+	107284768,107300140,107302034,107306378,107311681,107318751,107321982,107323889,107324833,107329542	107284913,107300222,107302114,107306647,107311737,107318879,107322118,107324017,107325004,107332194	0.833333
suprapubic_skin_male_adult_37_years	chr1	209429061	209429087	209429085	+	High_confidence	6	9	15	1.253565	3.373557	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429082	209430621	MIR205HG|ENST00000444286.1	+	209429082,209430424	209429408,209430621	0.800000
suprapubic_skin_male_adult_37_years	chr14	31250775	31250776	31250775	-	High_confidence	30	30	33	2.757844	4.513795	chr14	31250669	31251138	LTR|ERV1|LTR7Y	-	chr14	31250074	31250769	STRG.51633.2	-	31250074	31250769	0.939394
suprapubic_skin_male_adult_37_years	chr22	35896687	35896689	35896687	-	RAMPAGE_only	6	12	17	1.420707	2.952820	chr22	35896673	35896791	LINE|L2|L2	+	chr22	35743982	35938897	RBFOX2|ENST00000359369.8	-	35743982,35745922,35746472,35750425,35756104,35759887,35761201,35761414,35765422,35768256,35778024,35781599,35809779,35938846	35744249,35745995,35746561,35750457,35756144,35760020,35761294,35761468,35765483,35768349,35778078,35781743,35810004,35938897	0.941176
suprapubic_skin_male_adult_37_years	chr19	53865343	53865381	53865380	+	High_confidence	3	4	12	1.002852	3.022055	chr19	53865313	53865624	SINE|Alu|AluSx	-	chr19	53865583	53876435	MYADM|NM_001290193.1	+	53865583,53869753,53873527	53865728,53869838,53876435	0.583333
suprapubic_skin_male_adult_37_years	chr2	215018048	215018106	215018048	-	RAMPAGE_only	3	3	18	1.504278	3.836592	chr2	215017968	215018048	DNA|hAT-Charlie|MER5A	+	chr2	214931541	215032086	ABCA12|NM_015657.3	-	214931541,214934077,214937509,214942924,214945000,214947421,214948595,214949039,214950878,214953853,214955201,214956662,214958276,214959023,214966847,214968719,214970272,214973948,214974777,214975784,214978315,214978803,214980482,214982186,214983646,214986541,214987646,214989328,214989551,214990701,214997694,215000704,215001557,215004208,215007726,215010330,215011438,215011970,215015489,215018007,215019335,215019539,215025672,215026819,215031820	214932741,214934215,214937615,214943017,214945104,214947556,214948737,214949149,214951083,214954107,214955361,214956778,214958454,214959078,214966953,214968807,214970400,214974042,214974864,214976037,214978466,214979040,214980643,214982383,214983865,214986728,214987793,214989463,214989621,214991031,214997809,215001020,215001737,215004299,215007846,215010470,215011649,215012135,215015663,215018132,215019448,215019796,215025779,215026938,215032086	0.944444
suprapubic_skin_male_adult_37_years	chr6	89656050	89656067	89656050	-	RAMPAGE_only	2	2	8	0.668568	2.500000	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642774	89673169	STRG.27485.6	-	89642774,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89658370,89658917,89661578,89662239,89662964,89664628,89668151,89671080,89672363,89673169	1.000000
suprapubic_skin_male_adult_37_years	chr6	124993645	124993646	124993645	+	RAMPAGE_only	12	12	15	1.253565	2.950212	chr6	124993503	124993820	LINE|L2|L2c	-	chr6	124983367	125083515	RNF217|ENST00000359704.2	+	124983367,124996574,125009173,125045210,125057941,125076656,125081435,125082448,125082863	124983521,124996655,125009282,125045444,125058106,125076858,125081507,125082563,125083515	0.866667
suprapubic_skin_male_adult_37_years	chr5	133124484	133124485	133124484	-	High_confidence	2285	2311	2843	237.592419	4.870796	chr5	133124115	133124701	LTR|ERVL|MLT2B3	-	chr5	133111073	133124502	STRG.23746.1	-	133111073,133124228	133111515,133124502	0.981006
suprapubic_skin_male_adult_37_years	chr19	51069382	51069384	51069383	-	High_confidence	7	11	12	1.002852	3.095795	chr19	51069174	51069685	LINE|L2|L2-1_AMi	+	chr19	51056536	51069525	STRG.65721.1	-	51056536,51058537,51059824,51060432,51065015,51068825	51056775,51058674,51060093,51060619,51065106,51069525	0.833333
suprapubic_skin_male_adult_37_years	chr2	71050189	71050221	71050189	+	High_confidence	9	9	55	4.596406	4.408164	chr2	71048568	71050605	LTR|ERV1|HERVE-int	+	chr2	71050189	71056003	STRG.9041.1	+	71050189,71055178	71050334,71056003	1.000000
suprapubic_skin_male_adult_37_years	chr4	76234500	76234536	76234518	-	High_confidence	8	8	46	3.844267	4.618095	chr4	76234334	76234657	LTR|ERV1|MER61A	-	chr4	76158759	76234536	SCARB2|ENST00000638295.1	-	76158759,76163224,76166249,76168402,76169866,76174143,76175790,76176436,76179516,76180953,76195706,76234302	76161751,76163383,76166301,76168476,76169985,76174313,76175910,76176528,76179705,76181101,76195864,76234536	0.891304
suprapubic_skin_male_adult_37_years	chr10	119682528	119682553	119682528	-	High_confidence	8	8	35	2.924986	4.366681	chr10	119682381	119682650	LTR|ERVL|MLT2C1	+	chr10	119681702	119682540	STRG.42875.1	-	119681702,119682310	119681738,119682540	0.771429
suprapubic_skin_male_adult_37_years	chr8	101975326	101975329	101975326	-	High_confidence	26	27	50	4.178551	4.317488	chr8	101975304	101975478	DNA|hAT-Charlie|MER5A	-	chr8	101692865	101975329	NCALD|ENST00000520690.5	-	101692865,101719251,101915808,101975259	101692896,101719648,101915858,101975329	0.800000
suprapubic_skin_male_adult_37_years	chr16	56740866	56740907	56740905	-	High_confidence	25	38	77	6.434969	5.044203	chr16	56739963	56741004	Retroposon|SVA|SVA_F	-	chr16	56739501	56740928	STRG.58328.2	-	56739501,56740042	56739816,56740928	0.961039
suprapubic_skin_male_adult_37_years	chr8	12522682	12522684	12522683	+	High_confidence	8	14	21	1.754991	3.431624	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12522527	12567845	STRG.33952.1	+	12522527,12530942,12565885	12522846,12531031,12567845	0.666667
suprapubic_skin_male_adult_37_years	chr2	177314885	177314917	177314916	-	High_confidence	11	14	36	3.008557	4.771143	chr2	177314867	177315028	DNA|hAT-Charlie|MER5A1	+	chr2	177283505	177314917	STRG.11465.14	-	177283505,177310963,177311232,177314795	177287834,177311035,177311328,177314917	0.611111
suprapubic_skin_male_adult_37_years	chr18	9117553	9117613	9117556	+	High_confidence	10	12	41	3.426412	4.716950	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9117525	9119566	NDUFV2|ENST00000483511.1	+	9117525,9117837,9119325,9119473	9117638,9117903,9119388,9119566	0.585366
suprapubic_skin_male_adult_37_years	chr6	169654688	169654702	169654701	-	RAMPAGE_only	5	5	12	1.002852	2.845351	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169647647	169660692	WDR27|ENST00000441385.2	-	169647647,169649197,169651929,169658275,169659085,169659450,169660662	169647870,169649275,169652008,169658358,169659207,169659518,169660692	0.500000
suprapubic_skin_male_adult_37_years	chr6	42403667	42403673	42403667	-	RAMPAGE_only	6	6	10	0.835710	2.721928	chr6	42403232	42403669	LTR|ERVL-MaLR|MLT1C	+	chr6	42228125	42451261	TRERF1|ENST00000372917.8	-	42228125,42232680,42236204,42243247,42246455,42254850,42256727,42256962,42258134,42259338,42264703,42265750,42268153,42269498,42300637,42362946,42451176	42228669,42232892,42236411,42243361,42246544,42254926,42256831,42257102,42258201,42259723,42264854,42265797,42269251,42269848,42300749,42363079,42451261	1.000000
suprapubic_skin_male_adult_37_years	chr2	233691673	233691710	233691709	+	RAMPAGE_only	29	29	63	5.264974	5.457361	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233692865	233773305	UGT1A6|NM_001072.3	+	233692865,233767033,233767848,233768219,233772261	233693865,233767165,233767936,233768439,233773305	0.730159
suprapubic_skin_male_adult_37_years	chr3	144379544	144379545	144379544	-	High_confidence	135	165	178	14.875642	5.215252	chr3	144379302	144379754	LTR|ERVL|MLT2A2	-	chr3	144374574	144379535	STRG.17016.1	-	144374574,144379388	144376238,144379535	0.960674
suprapubic_skin_male_adult_37_years	chr11	65440737	65440806	65440737	+	RAMPAGE_only	10	10	67	5.599259	4.509465	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65437271	65446956	STRG.44879.7	+	65437271,65445694	65445376,65446956	0.970149
suprapubic_skin_male_adult_37_years	chr19	23824065	23824066	23824065	-	High_confidence	28	34	39	3.259270	4.804508	chr19	23823964	23824289	LTR|ERV1|LTR4	-	chr19	23817601	23824049	STRG.64689.1	-	23817601,23823739	23819445,23824049	1.000000
suprapubic_skin_male_adult_37_years	chr3	40077289	40077290	40077289	-	High_confidence	70	70	70	5.849972	4.539649	chr3	40076975	40078483	LTR|ERV1|LTR12C	-	chr3	40076965	40077273	STRG.14429.1	-	40076965	40077273	0.628571
suprapubic_skin_male_adult_37_years	chr18	9588180	9588184	9588180	-	RAMPAGE_only	7	7	13	1.086423	3.238901	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9577063	9595061	PPP4R1|ENST00000580583.5	-	9577063,9584514,9584720,9588088,9588710,9593767,9595017	9577191,9584580,9584828,9588235,9588853,9593874,9595061	0.615385
suprapubic_skin_male_adult_37_years	chr3	194840830	194840831	194840830	+	High_confidence	34	34	37	3.092128	4.107018	chr3	194840443	194841113	LTR|ERV1|LTR12D	+	chr3	194840850	194841434	STRG.17964.1	+	194840850	194841434	0.945946
suprapubic_skin_male_adult_37_years	chr7	134527596	134527597	134527596	+	High_confidence	14	17	18	1.504278	3.969816	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.944444
suprapubic_skin_male_adult_37_years	chr19	9140390	9140428	9140393	+	High_confidence	50	50	159	13.287793	6.185063	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9161433	STRG.63866.3	+	9140396,9155924,9156611,9157979,9158825,9160113	9140592,9156041,9157394,9158075,9158908,9161433	0.874214
suprapubic_skin_male_adult_37_years	chr16	23278251	23278287	23278267	+	RAMPAGE_only	8	8	34	2.841415	3.777777	chr16	23278204	23278287	LINE|L1|L1MB7	+	chr16	23302269	23381299	SCNN1B|NM_000336.2	+	23302269,23348591,23352800,23355298,23367855,23371298,23371775,23375737,23377164,23377328,23378705,23380093,23380420	23302437,23348910,23353074,23355489,23367959,23371462,23371883,23375855,23377240,23377386,23378767,23380169,23381299	0.705882
suprapubic_skin_male_adult_37_years	chr10	121974531	121974540	121974531	-	High_confidence	2	2	7	0.584997	2.584963	chr10	121974357	121974506	DNA|hAT-Charlie|MER5A	-	chr10	121959364	121974285	NSMCE4A|ENST00000468209.5	-	121959364,121959500,121960357,121961422,121963237,121965285,121967654,121970938,121974003	121959410,121959595,121960406,121961517,121963328,121965385,121967806,121971069,121974285	0.857143
suprapubic_skin_male_adult_37_years	chr7	7566038	7566052	7566051	-	High_confidence	5	5	11	0.919281	2.921928	chr7	7565778	7566082	SINE|Alu|AluSc	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.545455
suprapubic_skin_male_adult_37_years	chr22	23709168	23709171	23709168	-	RAMPAGE_only	3	3	7	0.584997	2.521641	chr22	23708980	23709629	LINE|L1|L1MA6	+	chr22	23659875	23717267	STRG.69302.5	-	23659875,23683724,23686837,23690235,23705428,23709129,23709785,23714186,23715008,23717030	23660000,23683867,23686995,23695517,23705541,23709241,23709867,23714342,23715194,23717267	1.000000
suprapubic_skin_male_adult_37_years	chr18	61652303	61652309	61652303	+	High_confidence	211	244	351	29.333429	5.704097	chr18	61652260	61652563	SINE|Alu|AluJr	-	chr18	61652290	61662527	STRG.63214.1	+	61652290,61662224	61652403,61662527	0.800570
suprapubic_skin_male_adult_37_years	chr1	17624220	17624221	17624220	+	RAMPAGE_only	10	10	10	0.835710	3.321928	chr1	17624115	17624252	SINE|MIR|MIR3	+	chr1	17619873	17697649	STRG.685.8	+	17619873,17622995,17624386,17625955,17627329,17632320,17634547,17634834,17637887,17638561,17639237,17640201,17648553,17654635,17655878,17656553,17664446,17687572,17695157,17696847	17621941,17623175,17624503,17626048,17627503,17632466,17634562,17635016,17638003,17638689,17639981,17640302,17648675,17654722,17656102,17656708,17664595,17687747,17695280,17697649	0.500000
suprapubic_skin_male_adult_37_years	chr2	120793967	120793968	120793967	+	RAMPAGE_only	7	7	11	0.919281	2.921928	chr2	120793847	120793996	SINE|MIR|MIRc	+	chr2	120792408	120992653	GLI2|ENST00000452319.5	+	120792408,120797290,120927360,120951242,120955244,120968713,120970392,120971940,120974923,120978433,120982715,120984470,120986277,120988207	120792438,120797468,120927466,120951445,120955430,120968915,120970606,120972063,120975109,120978583,120982880,120984743,120986614,120992653	0.909091
suprapubic_skin_male_adult_37_years	chr14	102246218	102246232	102246218	-	High_confidence	4	4	14	1.169994	3.238901	chr14	102246199	102246391	LTR|ERV1|HERVFH21-int	+	chr14	102229072	102246247	MOK|ENST00000520266.5	-	102229072,102233687,102246056	102229657,102233789,102246247	0.500000
suprapubic_skin_male_adult_37_years	chr17	41871754	41871832	41871754	-	RAMPAGE_only	3	3	16	1.337136	3.750000	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.875000
suprapubic_skin_male_adult_37_years	chr20	18794063	18794086	18794077	+	High_confidence	29	29	89	7.437821	5.398584	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794067	18796060	STRG.66864.1	+	18794067,18794530	18794106,18796060	0.842697
suprapubic_skin_male_adult_37_years	chr6	32172646	32172649	32172648	-	High_confidence	18	25	36	3.008557	4.627987	chr6	32172466	32172653	SINE|MIR|MIR	-	chr6	32169965	32172683	STRG.25871.5	-	32169965,32170164,32170424,32170936,32171296,32172574	32170038,32170260,32170600,32171070,32171505,32172683	0.833333
suprapubic_skin_male_adult_37_years	chr5	21774150	21774177	21774176	+	High_confidence	9	10	19	1.587849	3.836592	chr5	21774041	21774592	LTR|ERVL|MLT2A2	+	chr5	21774187	21779562	STRG.21812.1	+	21774187,21779257	21774509,21779562	0.894737
suprapubic_skin_male_adult_37_years	chr11	64900883	64900892	64900884	-	RAMPAGE_only	2	3	7	0.584997	2.584963	chr11	64900759	64900881	SINE|MIR|MIRc	-	chr11	64894545	64913395	ATG2A|ENST00000418259.5	-	64894545,64895289,64896461,64896747,64897411,64897670,64897838,64898085,64898260,64898635,64900493,64900883,64901961,64902259,64902509,64903287,64903589,64905562,64905741,64906112,64906333,64906664,64907254,64907524,64907747,64908990,64909270,64909680,64910039,64910615,64910806,64911037,64911841,64912084,64912326,64913037,64913265	64895209,64895442,64896616,64896869,64897494,64897743,64897974,64898170,64898362,64898842,64900629,64901092,64902176,64902386,64902680,64903364,64903660,64905655,64905848,64906193,64906533,64906815,64907439,64907664,64907890,64909150,64909367,64909924,64910195,64910708,64910954,64911275,64911982,64912249,64912423,64913136,64913395	0.857143
suprapubic_skin_male_adult_37_years	chr4	151687156	151687171	151687156	-	High_confidence	5	5	10	0.835710	2.921928	chr4	151687082	151687177	LINE|L2|L2b	+	chr4	151670943	151687083	GATB|ENST00000507592.5	-	151670943,151672761,151679812,151686907	151671302,151672896,151679891,151687083	1.000000
suprapubic_skin_male_adult_37_years	chr12	109878873	109878897	109878896	-	RAMPAGE_only	3	3	12	1.002852	2.732159	chr12	109878724	109878876	LINE|L2|L2b	-	chr12	109852544	109880325	GLTP|ENST00000540772.1	-	109852544,109855618,109857525,109858682,109880271	109852737,109855738,109857659,109858741,109880325	0.750000
suprapubic_skin_male_adult_37_years	chr13	46711841	46711842	46711841	+	RAMPAGE_only	7	7	10	0.835710	2.646439	chr13	46711708	46711858	LINE|L1|X9_LINE	-	chr13	46553259	46742733	LRCH1|ENST00000389797.7	+	46553259,46650200,46669029,46681740,46685904,46687851,46689132,46692535,46694892,46699335,46701120,46705067,46705267,46711790,46712524,46715559,46723220,46728846,46733920,46741641	46553703,46650345,46669156,46681846,46686041,46687979,46689196,46692641,46695017,46699403,46701207,46705157,46705304,46711844,46712597,46715664,46723330,46728984,46733998,46742733	0.800000
suprapubic_skin_male_adult_37_years	chr5	32403115	32403146	32403115	-	RAMPAGE_only	4	4	14	1.169994	3.521641	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
suprapubic_skin_male_adult_37_years	chr2	178304401	178304402	178304401	-	RAMPAGE_only	20	23	25	2.089276	3.083587	chr2	178304220	178304583	LTR|ERVL-MaLR|THE1C	-	chr2	178254815	178256126	STRG.11491.1	-	178254815	178256126	0.920000
suprapubic_skin_male_adult_37_years	chr20	62939370	62939373	62939372	-	High_confidence	96	185	190	15.878494	5.990351	chr20	62939236	62939728	LINE|L2|L2	+	chr20	62938137	62939360	STRG.67940.1	-	62938137	62939360	0.968421
suprapubic_skin_male_adult_37_years	chr4	75127193	75127252	75127193	-	RAMPAGE_only	6	6	36	3.008557	4.477025	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.833333
suprapubic_skin_male_adult_37_years	chr5	128082243	128082276	128082243	-	High_confidence	3	3	11	0.919281	2.721928	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127966734	128082881	LINC01184|ENST00000508353.5	-	127966734,128076946,128082734	127966928,128077093,128082881	0.545455
suprapubic_skin_male_adult_37_years	chr3	79352403	79352475	79352474	-	High_confidence	43	63	211	17.633486	5.826575	chr3	79352296	79352755	LINE|L1|L1MD2	-	chr3	79334399	79352472	STRG.15659.1	-	79334399	79352472	0.815166
suprapubic_skin_male_adult_37_years	chr11	67999545	67999575	67999545	-	High_confidence	4	4	8	0.668568	2.500000	chr11	67999398	67999517	SINE|MIR|MIR3	-	chr11	67991103	67999194	UNC93B1|ENST00000610659.4	-	67991103,67996771,67997674,67998358,67999172	67991362,67996784,67997799,67998452,67999194	1.000000
suprapubic_skin_male_adult_37_years	chr1	34781485	34781490	34781489	+	High_confidence	9	10	18	1.504278	3.947703	chr1	34781455	34781569	SINE|MIR|MIRc	-	chr1	34781188	34786364	GJB3|ENST00000373366.2	+	34781188,34784737	34781778,34786364	0.944444
suprapubic_skin_male_adult_37_years	chr1	36159646	36159647	36159646	+	RAMPAGE_only	6	6	9	0.752139	2.947703	chr1	36159571	36159833	LINE|L2|L2b	-	chr1	36157214	36172540	MAP7D1|ENST00000530729.1	+	36157214,36170970,36171512,36172463	36157290,36171315,36171581,36172540	0.777778
suprapubic_skin_male_adult_37_years	chr17	10105203	10105211	10105210	-	RAMPAGE_only	3	3	8	0.668568	2.521641	chr17	10105079	10105165	DNA|hAT-Charlie|MER3	-	chr17	9910608	10114553	GAS7|ENST00000323816.8	-	9910608,9918000,9919625,9925475,9926640,9934165,9940125,9943120,9946893,9959201,9969676,9981803,10019776,10039741,10114441	9917341,9918099,9919705,9925599,9926769,9934244,9940200,9943236,9946983,9959255,9969762,9981884,10019897,10039795,10114553	0.500000
suprapubic_skin_male_adult_37_years	chr4	81154211	81154222	81154211	-	High_confidence	8	9	19	1.587849	3.038562	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.894737
suprapubic_skin_male_adult_37_years	chr1	174817530	174817538	174817530	+	RAMPAGE_only	8	9	14	1.169994	3.093069	chr1	174817300	174818587	LINE|L2|L2c	-	chr1	174799931	174995308	RABGAP1L|ENST00000489615.5	+	174799931,174811831,174957456,174969276,174976077,174978806,174982833,174988640,174989848	174800500,174811960,174957549,174969387,174976182,174978890,174982905,174988838,174995308	0.857143
suprapubic_skin_male_adult_37_years	chr17	27952585	27952608	27952607	+	High_confidence	8	8	26	2.172847	3.767183	chr17	27952522	27952949	LINE|L2|L2a	-	chr17	27952572	27964640	STRG.60077.1	+	27952572,27964325	27952685,27964640	0.884615
suprapubic_skin_male_adult_37_years	chr3	188947212	188947237	188947236	+	High_confidence	7	7	18	1.504278	3.461320	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.722222
suprapubic_skin_male_adult_37_years	chr19	15608040	15608041	15608040	-	High_confidence	143	143	146	12.201369	4.594986	chr19	15607625	15609207	LTR|ERV1|LTR12C	-	chr19	15596428	15608034	STRG.64247.1	-	15596428,15607568	15596956,15608034	0.972603
suprapubic_skin_male_adult_37_years	chr6	137045307	137045308	137045307	-	High_confidence	19	25	26	2.172847	3.703465	chr6	137045242	137045773	DNA|TcMar-Tigger|Tigger3b	-	chr6	136999970	137045180	IL20RA|NM_014432.3	-	136999970,137004620,137008598,137009316,137011273,137016967,137044640	137002355,137004760,137008743,137009492,137011452,137017103,137045180	0.961538
suprapubic_skin_male_adult_37_years	chr2	101998957	101998980	101998968	+	High_confidence	19	19	76	6.351398	5.460108	chr2	101998446	101999045	LTR|ERVL-MaLR|MLT1H1	-	chr2	101998961	102028423	IL1R2|NR_048564.1	+	101998961,102008514,102009561,102015870,102019637,102022186,102024532,102026110,102028225	101999116,102008642,102009826,102016051,102019812,102022249,102024668,102026253,102028423	0.947368
suprapubic_skin_male_adult_37_years	chr2	182928785	182928789	182928788	-	RAMPAGE_only	8	8	14	1.169994	2.931209	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.785714
suprapubic_skin_male_adult_37_years	chr9	90997012	90997041	90997037	+	High_confidence	11	19	43	3.593554	3.526001	chr9	90996845	90997203	LTR|ERVL-MaLR|THE1B	+	chr9	90997053	91001871	AL355607.2|ENST00000563268.1	+	90997053,90997595,91000769	90997124,90997817,91001871	0.906977
suprapubic_skin_male_adult_37_years	chr11	10806191	10806195	10806191	-	High_confidence	8	9	15	1.253565	3.640224	chr11	10806178	10806347	DNA|hAT-Charlie|MER5A	-	chr11	10804291	10806263	EIF4G2|ENST00000532152.5	-	10804291,10804912,10805906	10804418,10805015,10806263	0.800000
suprapubic_skin_male_adult_37_years	chr12	123390684	123390762	123390744	+	High_confidence	6	6	40	3.342841	4.823864	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.900000
suprapubic_skin_male_adult_37_years	chr16	81181330	81181335	81181330	-	High_confidence	6	6	12	1.002852	3.251629	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	1.000000
suprapubic_skin_male_adult_37_years	chr9	72363490	72363522	72363490	-	High_confidence	2	2	7	0.584997	2.521641	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	1.000000
suprapubic_skin_male_adult_37_years	chr2	168577034	168577109	168577087	+	RAMPAGE_only	5	5	33	2.757844	4.696132	chr2	168576807	168577855	LINE|L2|L2a	-	chr2	168456248	168775134	CERS6|NM_203463.2	+	168456248,168547595,168561191,168630984,168691033,168694958,168715000,168717871,168765591,168769509	168456618,168547701,168561322,168631042,168691084,168695051,168715129,168717978,168765748,168775134	0.696970
suprapubic_skin_male_adult_37_years	chr5	73286443	73286446	73286445	+	RAMPAGE_only	11	18	27	2.256418	4.053661	chr5	73286219	73286628	LTR|ERVL|MLT2B1	+	chr5	73288582	73289236	STRG.22620.1	+	73288582	73289236	0.518519
suprapubic_skin_male_adult_37_years	chr17	8448651	8448670	8448669	+	High_confidence	2	2	8	0.668568	2.521641	chr17	8448710	8448938	DNA|TcMar-Tigger|MER8	+	chr17	8448603	8461384	NDEL1|ENST00000582277.5	+	8448603,8450779,8454795,8460008,8461136	8448686,8450953,8454887,8460160,8461384	0.875000
suprapubic_skin_male_adult_37_years	chr14	51589974	51590000	51589996	+	RAMPAGE_only	45	63	128	10.697091	5.232546	chr14	51589786	51590085	SINE|Alu|AluSq	+	chr14	51651857	51730727	FRMD6|NM_001267046.1	+	51651857,51689690,51698141,51701055,51702511,51704748,51708077,51711530,51712482,51715324,51720054,51721948,51725778,51727744	51651996,51689935,51698232,51701159,51702588,51704935,51708233,51711596,51712551,51715499,51720390,51722080,51725870,51730727	0.781250
suprapubic_skin_male_adult_37_years	chr8	144103566	144103585	144103584	-	High_confidence	4	4	8	0.668568	2.521641	chr8	144103289	144103558	SINE|MIR|MIR	-	chr8	144098636	144104190	SHARPIN|ENST00000398712.6	-	144098636,144098865,144099080,144099276,144099509,144099702,144099928,144103050,144103552	144098788,144098994,144099205,144099430,144099618,144099844,144100069,144103225,144104190	0.875000
suprapubic_skin_male_adult_37_years	chr14	77736978	77737038	77736978	-	High_confidence	5	6	23	1.922134	3.351953	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.956522
suprapubic_skin_male_adult_37_years	chr2	186174066	186174136	186174066	+	High_confidence	35	38	117	9.777810	5.728068	chr2	186173868	186174251	LTR|ERVL|MLT2A1	+	chr2	186174097	186182289	STRG.11831.1	+	186174097,186182052	186174223,186182289	0.752137
suprapubic_skin_male_adult_37_years	chr19	46203082	46203083	46203082	-	High_confidence	18	19	22	1.838563	3.203702	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.636364
suprapubic_skin_male_adult_37_years	chr11	71745875	71745915	71745875	+	High_confidence	32	32	126	10.529949	5.402425	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.944444
suprapubic_skin_male_adult_37_years	chr3	135965682	135965758	135965723	+	High_confidence	51	78	389	32.509128	6.356323	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.966581
suprapubic_skin_male_adult_37_years	chr22	41940217	41940222	41940221	-	High_confidence	11	11	24	2.005705	3.882045	chr22	41939903	41940386	LINE|L2|L2a	+	chr22	41938720	41940219	CENPM|NM_001110215.2	-	41938720,41940138	41939196,41940219	0.791667
suprapubic_skin_male_adult_37_years	chr3	33864073	33864119	33864073	+	High_confidence	2	2	12	1.002852	3.459432	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33863895	33866468	PDCD6IP|ENST00000473593.1	+	33863895,33865242,33866350	33864129,33865430,33866468	0.500000
suprapubic_skin_male_adult_37_years	chr1	212232522	212232523	212232522	-	RAMPAGE_only	49	60	65	5.432117	5.141896	chr1	212232282	212232732	LTR|ERVL|MLT2A2	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	0.892308
suprapubic_skin_male_adult_37_years	chr15	45148395	45148428	45148427	+	High_confidence	4	4	11	0.919281	2.845351	chr15	45148465	45148730	DNA|hAT-Tip100|ORSL	+	chr15	45147954	45153239	DUOX1|ENST00000557893.5	+	45147954,45148271,45150631,45151122,45151873,45152285	45147997,45148447,45150701,45151248,45152052,45153239	1.000000
suprapubic_skin_male_adult_37_years	chr18	23576836	23576864	23576844	-	High_confidence	4	4	11	0.919281	3.095795	chr18	23576532	23578195	LTR|ERV1|LTR12C	-	chr18	23573451	23576947	NPC1|ENST00000587223.1	-	23573451,23576480	23573574,23576947	0.909091
suprapubic_skin_male_adult_37_years	chrX	5726324	5726325	5726324	-	High_confidence	8	8	8	0.668568	2.750000	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5726024	5726310	STRG.70628.1	-	5726024	5726310	0.875000
suprapubic_skin_male_adult_37_years	chr16	21048703	21048704	21048703	-	High_confidence	11	11	11	0.919281	2.550341	chr16	21042672	21048703	LINE|L1|L1PA2	-	chr16	21024625	21048684	STRG.57414.1	-	21024625,21027026,21031044,21033973,21037760,21039851,21042026,21048561	21024701,21027127,21031286,21034085,21037980,21039943,21042203,21048684	0.818182
suprapubic_skin_male_adult_37_years	chr8	136530776	136530792	136530791	+	High_confidence	3	5	11	0.919281	3.321928	chr8	136530234	136530974	LTR|ERV1|LTR12C	-	chr8	136530797	136897601	LINC02055|ENST00000524346.5	+	136530797,136536977,136789834,136797273,136896984,136897432	136531006,136537059,136789889,136797370,136897078,136897601	0.545455
suprapubic_skin_male_adult_37_years	chr10	65570509	65570522	65570521	+	High_confidence	17	26	73	6.100685	5.575735	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.684932
suprapubic_skin_male_adult_37_years	chr11	67848678	67848702	67848701	-	High_confidence	6	6	23	1.922134	3.754442	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67845307	67848715	STRG.45025.1	-	67845307,67848565	67847989,67848715	0.913043
suprapubic_skin_male_adult_37_years	chr16	50396877	50396878	50396877	-	High_confidence	7	7	11	0.919281	2.721928	chr16	50396540	50397080	LTR|ERVL|MLT2A2	-	chr16	50390994	50396912	STRG.57734.1	-	50390994,50396626	50391141,50396912	0.727273
suprapubic_skin_male_adult_37_years	chr21	28048446	28048447	28048446	+	High_confidence	19	19	19	1.587849	2.565077	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.947368
suprapubic_skin_male_adult_37_years	chr19	55677173	55677174	55677173	+	High_confidence	8	8	10	0.835710	2.921928	chr19	55677165	55677362	SINE|MIR|MIR	+	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	1.000000
suprapubic_skin_male_adult_37_years	chr18	46087022	46087066	46087065	-	High_confidence	4	4	17	1.420707	3.030639	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.941176
suprapubic_skin_male_adult_37_years	chr11	65430097	65430348	65430097	+	RAMPAGE_only	13	17	169	14.123503	5.402031	chr11	65430027	65430148	SINE|MIR|MIRb	+	chr11	65423637	65445540	STRG.44879.6	+	65423637,65445432	65445391,65445540	0.994083
suprapubic_skin_male_adult_37_years	chr22	32461628	32461649	32461628	-	RAMPAGE_only	4	4	12	1.002852	2.751629	chr22	32461578	32461771	DNA|hAT|MamRep38	+	chr22	32413846	32464449	STRG.69791.1	-	32413846,32415914,32417084,32419361,32431346,32432372,32433718,32435703,32437759,32442670,32445634,32445840,32447211,32453382,32457262,32457917,32459725,32461573,32464373	32414425,32415991,32417148,32419404,32431414,32432543,32433772,32435880,32437851,32442731,32445698,32445996,32447340,32453503,32457386,32458034,32459843,32461661,32464449	1.000000
suprapubic_skin_male_adult_37_years	chr2	240022172	240022182	240022172	-	RAMPAGE_only	6	6	12	1.002852	2.913977	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.916667
suprapubic_skin_male_adult_37_years	chr12	110440319	110440380	110440319	-	RAMPAGE_only	3	3	17	1.420707	3.690117	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	1.000000
suprapubic_skin_male_adult_37_years	chr19	15829094	15829095	15829094	+	High_confidence	21	22	22	1.838563	3.653757	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	0.863636
suprapubic_skin_male_adult_37_years	chr8	100336258	100336318	100336308	+	High_confidence	20	20	60	5.014261	4.974955	chr8	100336300	100336359	DNA|hAT-Charlie|MER102b	-	chr8	100336291	100347848	STRG.35407.1	+	100336291,100345967	100336497,100347848	0.783333
suprapubic_skin_male_adult_37_years	chr8	116648828	116648905	116648864	-	RAMPAGE_only	9	9	41	3.426412	4.171474	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	1.000000
suprapubic_skin_male_adult_37_years	chr7	64949086	64949120	64949119	+	RAMPAGE_only	8	8	51	4.262122	4.701645	chr7	64948006	64950297	LTR|ERVK|HERVK9-int	+	chr7	64947700	64950724	STRG.30604.1	+	64947700,64949115,64950203	64947857,64949409,64950724	1.000000
suprapubic_skin_male_adult_37_years	chr3	197546730	197546736	197546731	-	High_confidence	16	29	54	4.512835	4.386845	chr3	197546665	197546787	SINE|MIR|MIR3	+	chr3	197533492	197547337	STRG.18112.16	-	197533492,197546360,197547134	197533561,197546486,197547337	0.907407
suprapubic_skin_male_adult_37_years	chr9	4887712	4887738	4887734	-	High_confidence	14	14	67	5.599259	5.071624	chr9	4887563	4887920	LTR|ERVL-MaLR|MLT1H2	-	chr9	4879969	4887723	STRG.36725.1	-	4879969,4887583	4880761,4887723	1.000000
suprapubic_skin_male_adult_37_years	chr9	92720686	92720756	92720755	-	RAMPAGE_only	5	5	29	2.423560	4.155756	chr9	92720689	92720791	DNA|TcMar-Tigger|Tigger19b	-	chr9	92711362	92764801	BICD2|NM_001003800.1	-	92711362,92717796,92718538,92720299,92722655,92729023,92764504	92715463,92717948,92719582,92720755,92722808,92729236,92764801	1.000000
suprapubic_skin_male_adult_37_years	chr9	107293852	107293858	107293857	+	RAMPAGE_only	5	5	10	0.835710	2.725481	chr9	107293792	107294014	SINE|Alu|AluJr	-	chr9	107284768	107332194	RAD23B|NM_001244713.1	+	107284768,107300140,107302034,107306378,107311681,107318751,107321982,107323889,107324833,107329542	107284913,107300222,107302114,107306647,107311737,107318879,107322118,107324017,107325004,107332194	0.900000
suprapubic_skin_male_adult_37_years	chr17	11944814	11944830	11944829	+	RAMPAGE_only	8	8	14	1.169994	2.664498	chr17	11944747	11944849	DNA|hAT-Charlie|MER5A	+	chr17	11882903	11969748	DNAH9|ENST00000396001.6	+	11882903,11883585,11886824,11891776,11894373,11902718,11905660,11923813,11929865,11932013,11933879,11937351,11942302,11961866,11969299	11883172,11883750,11886965,11891947,11894496,11902912,11905809,11923941,11930093,11932205,11934071,11937522,11942485,11962256,11969748	1.000000
suprapubic_skin_male_adult_37_years	chr4	8436023	8436026	8436023	-	High_confidence	35	40	73	6.100685	5.562777	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366711	8436054	STRG.18538.4	-	8366711,8370907,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8435922	8367080,8370994,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8436054	0.794521
suprapubic_skin_male_adult_37_years	chr1	166850222	166850223	166850222	+	RAMPAGE_only	9	9	12	1.002852	3.084963	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
suprapubic_skin_male_adult_37_years	chr5	50443311	50443324	50443312	-	High_confidence	5	10	19	1.587849	3.326360	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.894737
suprapubic_skin_male_adult_37_years	chr10	60657132	60657133	60657132	-	RAMPAGE_only	19	19	26	2.172847	3.040391	chr10	60656961	60657332	LTR|ERVL-MaLR|THE1B	-	chr10	60028400	60733490	ANK3|ENST00000373827.6	-	60028400,60042671,60055657,60059339,60059697,60063110,60064156,60067934,60080536,60082614,60083491,60084601,60085156,60086676,60088146,60105904,60108829,60114224,60134270,60138963,60166590,60166823,60172307,60172899,60173087,60181328,60186714,60196144,60196526,60198339,60200128,60203001,60205791,60208035,60213411,60234687,60261858,60263834,60270130,60278773,60279049,60279537,60615185,60733262	60029826,60042759,60056036,60059430,60060006,60063254,60064288,60068009,60080618,60082737,60083617,60084830,60085253,60086884,60088358,60106059,60109054,60114331,60134373,60139087,60166653,60166896,60172403,60172998,60173186,60181427,60186912,60196243,60196625,60198537,60200227,60203100,60205890,60208233,60213510,60234786,60261957,60264020,60270229,60278872,60279148,60279639,60615224,60733490	0.730769
suprapubic_skin_male_adult_37_years	chr11	125090446	125090447	125090446	+	RAMPAGE_only	199	200	205	17.132060	4.995722	chr11	125089312	125090854	LTR|ERV1|LTR12C	+	chr11	125062799	125093313	STRG.46361.2	+	125062799,125076756,125077229,125077449,125079111,125079683,125080613,125081420,125081753,125082243,125083814,125084233,125084824,125085065,125085394,125085576,125085953,125086203,125088118	125062873,125076838,125077323,125077528,125079247,125079760,125080780,125081458,125081906,125082334,125083877,125084319,125084873,125085139,125085473,125085674,125086018,125086260,125093313	0.931707
suprapubic_skin_male_adult_37_years	chr15	92678170	92678213	92678212	-	RAMPAGE_only	7	11	28	2.339989	3.261490	chr15	92678051	92678466	LTR|ERVL-MaLR|MSTC	-	chr15	92619182	92668043	FAM174B|ENST00000557480.5	-	92619182,92630213,92667897	92619459,92630345,92668043	0.928571
suprapubic_skin_male_adult_37_years	chr9	90755606	90755625	90755618	-	RAMPAGE_only	3	3	10	0.835710	3.121928	chr9	90755223	90759266	LTR|ERV1|HERVE-int	-	chr9	90751239	90752230	OR7E108P|ENST00000605227.1	-	90751239	90752230	0.900000
suprapubic_skin_male_adult_37_years	chr14	41911248	41911365	41911264	+	High_confidence	12	12	73	6.100685	5.713730	chr14	41908983	41911704	LINE|L1|L1PA3	-	chr14	41911265	41912193	STRG.51897.1	+	41911265	41912193	0.602740
suprapubic_skin_male_adult_37_years	chr2	3473039	3473040	3473039	+	High_confidence	13	13	19	1.587849	3.239098	chr2	3472789	3473098	LTR|ERV1|MER31B	-	chr2	3472420	3479567	TRAPPC12|ENST00000469400.1	+	3472420,3477694,3478845,3479218	3472602,3477795,3478933,3479567	0.894737
suprapubic_skin_male_adult_37_years	chr6	111916397	111916398	111916397	-	RAMPAGE_only	9	9	10	0.835710	3.169925	chr6	111916162	111916607	LTR|ERVL|MLT2A2	-	chr6	111900488	111901851	LINC02527|ENST00000449069.2	-	111900488,111901742	111901141,111901851	0.600000
suprapubic_skin_male_adult_37_years	chr3	157381661	157381704	157381703	-	High_confidence	6	6	25	2.089276	3.669275	chr3	157381425	157381750	SINE|Alu|AluSz6	+	chr3	157363691	157381673	VEPH1|ENST00000488772.1	-	157363691,157364302,157381155,157381593	157363761,157364512,157381376,157381673	0.920000
suprapubic_skin_male_adult_37_years	chr5	176411455	176411459	176411458	-	RAMPAGE_only	342	416	584	48.805478	6.857388	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.833904
suprapubic_skin_male_adult_37_years	chr8	144106344	144106394	144106393	+	High_confidence	2	3	7	0.584997	2.521641	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.571429
suprapubic_skin_male_adult_37_years	chrX	85383053	85383063	85383053	-	RAMPAGE_only	6	6	15	1.253565	3.189898	chrX	85382547	85383367	LTR|ERVL|MER21B	-	chrX	85277388	85379743	POF1B|NM_024921.3	-	85277388,85282202,85303405,85304342,85305790,85306180,85307162,85308123,85314431,85315706,85330948,85345859,85351349,85359549,85367691,85379172,85379638	85279426,85282317,85303488,85304471,85305910,85306333,85307276,85308216,85314506,85315734,85331079,85346042,85351451,85359630,85367766,85379495,85379743	1.000000
suprapubic_skin_male_adult_37_years	chr1	184590754	184590802	184590798	+	RAMPAGE_only	5	5	22	1.838563	3.484184	chr1	184590844	184591183	DNA|TcMar-Tigger|MER2B	+	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.863636
suprapubic_skin_male_adult_37_years	chr1	226685640	226685662	226685651	-	High_confidence	6	7	39	3.259270	4.404260	chr1	226685320	226685763	LINE|L2|L2c	+	chr1	226631689	226685653	STRG.6026.3	-	226631689,226637678,226639556,226641920,226647166,226648671,226685368	226634886,226637750,226639658,226642125,226647380,226648771,226685653	1.000000
suprapubic_skin_male_adult_37_years	chr2	178301745	178301786	178301745	+	RAMPAGE_only	2	2	8	0.668568	2.500000	chr2	178301628	178301912	LTR|ERVL-MaLR|MLT1I	+	chr2	178284926	178395785	OSBPL6|ENST00000409631.5	+	178284926,178306029,178324176,178328255,178331551,178332640,178332870,178336300,178338990,178339671,178349223,178361681,178373889,178382419,178383023,178384038,178385457,178387060,178389008,178391072,178392411,178394312,178395450	178285121,178306286,178324269,178328378,178331605,178332754,178333041,178336433,178339094,178339764,178349389,178361815,178374027,178382507,178383277,178384176,178385521,178387139,178389153,178391217,178392538,178394435,178395785	1.000000
suprapubic_skin_male_adult_37_years	chr7	98355421	98355479	98355478	-	High_confidence	2	2	7	0.584997	2.521641	chr7	98355455	98355751	SINE|Alu|AluJb	+	chr7	98317236	98355426	BAIAP2L1|ENST00000473569.1	-	98317236,98320057,98320236,98355041	98317356,98320129,98320298,98355426	0.714286
suprapubic_skin_male_adult_37_years	chr5	77139278	77139279	77139278	+	High_confidence	4	4	6	0.501426	2.584963	chr5	77139300	77139468	LTR|ERVL-MaLR|MLT1H	+	chr5	77139248	77148523	ZBED3-AS1|ENST00000515356.2	+	77139248,77146116,77147651	77139317,77147162,77148523	0.833333
suprapubic_skin_male_adult_37_years	chr9	90997678	90997732	90997683	+	High_confidence	100	126	412	34.431262	4.477898	chr9	90997473	90998100	DNA|TcMar-Tigger|MER6A	+	chr9	90997057	91001890	STRG.38371.1	+	90997057,90997595,91000769,91001484	90997120,90997817,91000840,91001890	0.966019
suprapubic_skin_male_adult_37_years	chr11	3477055	3477087	3477072	-	High_confidence	32	33	169	14.123503	5.410848	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3475577	3477084	STRG.43509.1	-	3475577,3476942	3476373,3477084	0.928994
suprapubic_skin_male_adult_37_years	chr6	167271170	167271176	167271175	+	High_confidence	11	11	21	1.754991	3.892407	chr6	167271035	167271181	DNA|hAT-Charlie|MER5A	+	chr6	167271168	167296196	UNC93A|ENST00000503433.5	+	167271168,167291438,167294516,167296031	167271458,167291576,167294698,167296196	0.809524
suprapubic_skin_male_adult_37_years	chr7	6590236	6590297	6590251	+	High_confidence	11	11	50	4.178551	4.706199	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.920000
suprapubic_skin_male_adult_37_years	chr3	48430142	48430179	48430178	-	High_confidence	3	3	10	0.835710	2.846439	chr3	48430133	48430258	SINE|MIR|MIRb	+	chr3	48403853	48430051	PLXNB1|ENST00000296440.10	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48430007	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48430051	1.000000
suprapubic_skin_male_adult_37_years	chr14	103848782	103848814	103848813	-	High_confidence	14	18	44	3.677125	5.036616	chr14	103848808	103849048	SINE|MIR|MIRb	+	chr14	103733752	103848801	STRG.54064.2	-	103733752,103736002,103737693,103738678,103738885,103739823,103741789,103742653,103746372,103749793,103752999,103754069,103757649,103778744,103784794,103797370,103848271	103735195,103736202,103737860,103738812,103739023,103740593,103742291,103742823,103746553,103749934,103753196,103754244,103757751,103778821,103784914,103797518,103848801	0.954545
suprapubic_skin_male_adult_37_years	chr7	101308295	101308317	101308295	+	High_confidence	7	9	26	2.172847	4.133661	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.846154
suprapubic_skin_male_adult_37_years	chr11	65181205	65181240	65181215	+	High_confidence	3	3	10	0.835710	2.725481	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.900000
suprapubic_skin_male_adult_37_years	chr8	51961397	51961463	51961397	+	High_confidence	4	4	13	1.086423	2.623517	chr8	51960557	51961435	LINE|L2|L2a	-	chr8	51961457	52022974	AC064807.2|ENST00000521188.1	+	51961457,52022415	51961570,52022974	1.000000
suprapubic_skin_male_adult_37_years	chr18	23576944	23576948	23576947	-	High_confidence	71	74	119	9.944952	5.095170	chr18	23576532	23578195	LTR|ERV1|LTR12C	-	chr18	23573451	23576947	NPC1|ENST00000587223.1	-	23573451,23576480	23573574,23576947	0.991597
suprapubic_skin_male_adult_37_years	chr3	24018976	24019044	24018976	+	High_confidence	6	6	43	3.593554	4.948896	chr3	24018754	24020004	LTR|ERV1|LTR2752	-	chr3	24018715	24189952	STRG.14083.1	+	24018715,24087924,24173783,24177949,24189574	24019269,24088061,24173904,24178012,24189952	0.767442
suprapubic_skin_male_adult_37_years	chr5	140700445	140700452	140700445	+	High_confidence	347	438	772	64.516830	4.975478	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.974093
suprapubic_skin_male_adult_37_years	chr10	62827079	62827091	62827087	-	High_confidence	35	36	78	6.518540	5.654251	chr10	62826881	62827087	SINE|MIR|MIRc	-	chr10	62812002	62827087	STRG.41250.3	-	62812002,62815860,62818540,62827012	62814468,62816069,62818647,62827087	0.948718
suprapubic_skin_male_adult_37_years	chr16	58421322	58421323	58421322	+	High_confidence	15	15	16	1.337136	3.773557	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421338	58462470	LINC02137|ENST00000561906.5	+	58421338,58435691,58461470,58462153	58421421,58435823,58461582,58462470	0.687500
suprapubic_skin_male_adult_37_years	chr7	64949232	64949238	64949237	+	RAMPAGE_only	4	4	8	0.668568	2.500000	chr7	64948006	64950297	LTR|ERVK|HERVK9-int	+	chr7	64947700	64950724	STRG.30604.1	+	64947700,64949115,64950203	64947857,64949409,64950724	1.000000
suprapubic_skin_male_adult_37_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	9	9	16	1.337136	3.452820	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	1.000000
suprapubic_skin_male_adult_37_years	chr8	30812418	30812466	30812465	-	High_confidence	5	5	25	2.089276	3.849224	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.920000
suprapubic_skin_male_adult_37_years	chr12	124355437	124355461	124355445	-	RAMPAGE_only	2	3	8	0.668568	2.807355	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124324415	124422554	NCOR2|ENST00000356219.7	-	124324415,124326190,124327408,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124398118,124400500,124402403,124419956,124422500	124325583,124326370,124327633,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362297,124363799,124372610,124374463,124378384,124385887,124398181,124400673,124402561,124420055,124422554	0.875000
suprapubic_skin_male_adult_37_years	chr9	121313947	121314021	121314002	+	RAMPAGE_only	19	20	102	8.524244	4.866004	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
suprapubic_skin_male_adult_37_years	chr2	37384500	37384504	37384500	-	High_confidence	7	8	12	1.002852	3.418296	chr2	37383330	37385519	LTR|ERV1|HERVH-int	-	chr2	37375274	37384421	STRG.7810.1	-	37375274,37384167	37376302,37384421	0.666667
suprapubic_skin_male_adult_37_years	chr9	39810000	39810064	39810033	-	High_confidence	21	21	53	4.429264	4.593059	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.905660
suprapubic_skin_male_adult_37_years	chr9	127944627	127944638	127944627	-	RAMPAGE_only	6	6	12	1.002852	2.845351	chr9	127944423	127944587	SINE|MIR|MIRb	-	chr9	127940880	127948159	FAM102A|ENST00000465821.5	-	127940880,127944776,127945366,127945648,127948070	127944684,127944898,127945562,127945753,127948159	0.916667
suprapubic_skin_male_adult_37_years	chr15	82935284	82935316	82935284	-	RAMPAGE_only	4	4	16	1.337136	3.750000	chr15	82934248	82936442	LINE|L2|L2a	+	chr15	82848982	82952721	HOMER2|ENST00000450735.6	-	82848982,82851150,82852141,82854643,82859028,82864166,82875272,82892684,82952530	82849903,82851231,82852252,82854800,82859135,82864259,82875404,82892841,82952721	0.750000
suprapubic_skin_male_adult_37_years	chr12	38720832	38720833	38720832	-	High_confidence	7	10	11	0.919281	2.663533	chr12	38720676	38722143	LTR|ERV1|MER52A	+	chr12	38652357	38721222	CPNE8|ENST00000538596.6	-	38652357,38670728,38675716,38677451,38685489,38693656,38702874,38720652	38654070,38670802,38675774,38677554,38685617,38693838,38702921,38721222	1.000000
suprapubic_skin_male_adult_37_years	chr4	56657854	56657893	56657876	-	RAMPAGE_only	5	5	17	1.420707	3.500000	chr4	56657736	56657851	SINE|MIR|MIR3	-	chr4	56647997	56656525	HOPX|ENST00000556614.6	-	56647997,56655856,56656343	56648797,56656012,56656525	0.588235
suprapubic_skin_male_adult_37_years	chr19	51069500	51069542	51069500	-	High_confidence	21	21	74	6.184256	5.518650	chr19	51069174	51069685	LINE|L2|L2-1_AMi	+	chr19	51056536	51069525	STRG.65721.1	-	51056536,51058537,51059824,51060432,51065015,51068825	51056775,51058674,51060093,51060619,51065106,51069525	0.986486
suprapubic_skin_male_adult_37_years	chr9	113188456	113188513	113188456	+	High_confidence	4	4	19	1.587849	3.461320	chr9	113188470	113188512	LINE|L1|X9_LINE	+	chr9	113188172	113264492	STRG.39268.2	+	113188172,113256113,113257112,113258693,113260271	113188613,113256277,113257185,113258862,113264492	0.947368
suprapubic_skin_male_adult_37_years	chr6	36369257	36369265	36369257	-	RAMPAGE_only	10	10	18	1.504278	3.683542	chr6	36369227	36369398	SINE|MIR|MIRb	-	chr6	36354090	36387566	ETV7|ENST00000339796.9	-	36354090,36366874,36368928,36371329,36373452,36375870,36385533,36387535	36354687,36366975,36369071,36371560,36373578,36376035,36385669,36387566	0.944444
suprapubic_skin_male_adult_37_years	chr12	10362345	10362346	10362345	+	RAMPAGE_only	5	5	8	0.668568	3.000000	chr12	10362140	10362659	LTR|ERV1|LTR10C	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.750000
suprapubic_skin_male_adult_37_years	chr12	110820071	110820093	110820092	+	RAMPAGE_only	3	3	7	0.584997	2.521641	chr12	110820121	110820289	LTR|ERVL-MaLR|MLT1J	+	chr12	110825656	110826138	STRG.49408.1	+	110825656	110826138	0.714286
suprapubic_skin_male_adult_37_years	chr6	144008795	144008804	144008795	-	High_confidence	3	4	7	0.584997	2.807355	chr6	144008773	144008892	SINE|MIR|MIRb	-	chr6	143940334	144008430	PLAGL1|ENST00000649211.1	-	143940334,143947984,143960468,143964786,143965179,143966157,143968906,144008089	143942663,143948460,143960542,143964818,143965279,143966212,143968978,144008430	0.571429
suprapubic_skin_male_adult_37_years	chr1	221504166	221504221	221504220	-	RAMPAGE_only	24	25	65	5.432117	4.838775	chr1	221503242	221507898	LINE|L1|L1PA15-16	+	chr1	221497082	221497288	STRG.5867.1	-	221497082	221497288	0.507692
suprapubic_skin_male_adult_37_years	chr16	81664272	81664305	81664304	+	RAMPAGE_only	5	5	19	1.587849	3.511085	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	1.000000
suprapubic_skin_male_adult_37_years	chr11	33696930	33696974	33696955	-	High_confidence	19	22	82	6.852824	5.548499	chr11	33696789	33697100	LINE|L2|L2a	+	chr11	33665219	33696701	AL049629.1|ENST00000534431.1	-	33665219,33669523,33670914,33696585	33665564,33669645,33670979,33696701	0.560976
suprapubic_skin_male_adult_37_years	chr6	79631273	79631329	79631302	+	High_confidence	47	48	199	16.630634	6.089973	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.984925
suprapubic_skin_male_adult_37_years	chr3	50312542	50312577	50312542	-	High_confidence	2	2	10	0.835710	2.503258	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50300481	50312988	STRG.14726.8	-	50300481,50300987,50302056,50303787,50309658	50300800,50301077,50302980,50303953,50312988	0.900000
suprapubic_skin_male_adult_37_years	chr4	170226587	170226588	170226587	+	High_confidence	43	46	52	4.345693	4.907336	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.634615
suprapubic_skin_male_adult_37_years	chr9	15186945	15186970	15186945	-	RAMPAGE_only	2	2	9	0.752139	2.500000	chr9	15186698	15186896	SINE|Alu|AluSc8	-	chr9	15171563	15188065	TTC39B|ENST00000380853.1	-	15171563,15175018,15177696,15182306,15185279,15186943,15187970	15172109,15175135,15177814,15182415,15185528,15187035,15188065	0.888889
suprapubic_skin_male_adult_37_years	chr17	75786608	75786617	75786608	+	RAMPAGE_only	3	6	12	1.002852	3.584963	chr17	75786575	75786885	SINE|Alu|AluSq2	+	chr17	75784854	75794198	UNK|ENST00000586527.1	+	75784854,75791759,75792312,75793442	75784984,75792019,75792478,75794198	0.750000
suprapubic_skin_male_adult_37_years	chr5	117454948	117454953	117454949	+	High_confidence	15	27	42	3.509983	4.374895	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.809524
suprapubic_skin_male_adult_37_years	chr7	44619050	44619051	44619050	+	RAMPAGE_only	111	111	118	9.861381	6.071632	chr7	44618793	44619481	LTR|ERVL|MER21A	+	chr7	44606638	44675245	STRG.30391.6	+	44606638,44618823,44624316,44645326,44647656,44666735,44673786,44674410,44675177	44606653,44619201,44624565,44645518,44647759,44666851,44673941,44674557,44675245	0.745763
suprapubic_skin_male_adult_37_years	chr14	68882874	68882971	68882879	-	High_confidence	7	7	64	5.348545	4.617156	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.890625
suprapubic_skin_male_adult_37_years	chr10	34973954	34973993	34973974	+	High_confidence	3	3	23	1.922134	4.229871	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34973983	34975576	AL392046.2|ENST00000635301.1	+	34973983,34974193,34974657	34974088,34974282,34975576	0.652174
suprapubic_skin_male_adult_37_years	chr12	53464773	53464842	53464841	+	RAMPAGE_only	8	8	33	2.757844	4.210765	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.787879
suprapubic_skin_male_adult_37_years	chr6	8224209	8224210	8224209	+	RAMPAGE_only	11	11	12	1.002852	3.095795	chr6	8224011	8224583	LTR|ERVL|MLT2A1	+	chr6	8195575	8342495	AL355499.1|ENST00000439891.3	+	8195575,8230113,8238930,8307452,8328004,8329654,8342324	8195635,8230273,8239016,8307560,8328277,8329923,8342495	0.500000
suprapubic_skin_male_adult_37_years	chr9	84368668	84368692	84368668	-	High_confidence	1	1	7	0.584997	2.584963	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.857143
suprapubic_skin_male_adult_37_years	chr2	227888491	227888525	227888491	+	High_confidence	5	5	19	1.587849	3.721612	chr2	227888311	227888642	LTR|ERVL|ERV3-16A3_LTR	-	chr2	227888660	227893916	STRG.12847.1	+	227888660,227889855,227891254,227893794	227888683,227890000,227891313,227893916	0.842105
suprapubic_skin_male_adult_37_years	chr6	43013460	43013473	43013460	-	High_confidence	3	3	18	1.504278	3.503258	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
suprapubic_skin_male_adult_37_years	chr16	55333607	55333608	55333607	-	High_confidence	14	14	16	1.337136	3.373557	chr16	55333420	55333769	LTR|ERVL-MaLR|MLT1A0	-	chr16	55259968	55333588	AC109462.1|ENST00000558730.2	-	55259968,55266707,55282537,55333500	55260429,55266794,55282664,55333588	0.500000
suprapubic_skin_male_adult_37_years	chr13	105729893	105729894	105729893	+	High_confidence	9	9	9	0.752139	2.503258	chr13	105729858	105730171	LINE|L2|L2a	-	chr13	105729500	105731708	LINC00343|ENST00000414368.2	+	105729500,105730314,105731447	105729959,105730458,105731708	1.000000
suprapubic_skin_male_adult_37_years	chr15	76214615	76214616	76214615	-	RAMPAGE_only	8	9	9	0.752139	2.750000	chr15	76214596	76214817	SINE|MIR|MIR	+	chr15	76194309	76196356	STRG.56077.1	-	76194309	76196356	0.666667
suprapubic_skin_male_adult_37_years	chr21	31531109	31531131	31531130	-	RAMPAGE_only	6	6	18	1.504278	3.572431	chr21	31531021	31531216	LINE|CR1|CR1-16_AMi	-	chr21	31118415	31558977	TIAM1|ENST00000286827.7	-	31118415,31124521,31127064,31130212,31130889,31135932,31141117,31141324,31146894,31152635,31153065,31154246,31164961,31182420,31187000,31195223,31202907,31210044,31213397,31217552,31223405,31225725,31245487,31251741,31266009,31276731,31339242,31463982,31558926	31120837,31124694,31127152,31130315,31130948,31136041,31141236,31141504,31147003,31152761,31153134,31154426,31165065,31182645,31187087,31195305,31203012,31210215,31213472,31217699,31223591,31225950,31245660,31252189,31266983,31276908,31339422,31464035,31558977	0.944444
suprapubic_skin_male_adult_37_years	chr20	14226540	14226571	14226570	+	High_confidence	2	2	6	0.501426	2.584963	chr20	14226326	14227700	LTR|ERV1|LTR12C	+	chr20	14226158	14228100	STRG.66678.1	+	14226158	14228100	1.000000
suprapubic_skin_male_adult_37_years	chr14	34536100	34536131	34536109	-	High_confidence	4	4	16	1.337136	3.189898	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.812500
suprapubic_skin_male_adult_37_years	chr1	95743024	95743075	95743024	+	RAMPAGE_only	4	8	24	2.005705	3.936180	chr1	95737199	95743135	LINE|L1|L1PB1	-	chr1	95759197	95760134	STRG.3207.1	+	95759197	95760134	0.791667
suprapubic_skin_male_adult_37_years	chr1	110046746	110046749	110046746	+	RAMPAGE_only	3	3	6	0.501426	2.584963	chr1	110046771	110047057	SINE|Alu|AluY	+	chr1	110041170	110074641	STRIP1|ENST00000473429.5	+	110041170,110043087,110043638,110044839,110045014,110046679,110047541,110047771,110049111,110050955,110051682,110053664,110072454,110074126	110041861,110043270,110043856,110044905,110045078,110046751,110047616,110047869,110050409,110051060,110051887,110054802,110072596,110074641	1.000000
suprapubic_skin_male_adult_37_years	chrX	20204049	20204057	20204049	-	RAMPAGE_only	6	6	10	0.835710	2.646439	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	1.000000
suprapubic_skin_male_adult_37_years	chr1	233655694	233655698	233655694	+	RAMPAGE_only	44	45	68	5.682830	5.214775	chr1	233655516	233655871	LTR|ERVL-MaLR|MLT1A0	+	chr1	233649940	233671491	KCNK1|ENST00000446915.1	+	233649940,233666594,233671270	233650049,233666990,233671491	0.529412
suprapubic_skin_male_adult_37_years	chr19	23516375	23516399	23516398	-	RAMPAGE_only	9	12	21	1.754991	4.021928	chr19	23516200	23517731	LTR|ERV1|PRIMA41-int	-	chr19	23492427	23512656	ZNF725P|ENST00000596753.1	-	23492427,23505274,23505854,23512512	23493692,23505370,23505981,23512656	0.571429
suprapubic_skin_male_adult_37_years	chr14	101731413	101731428	101731413	+	High_confidence	6	6	13	1.086423	3.026987	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101731440	101732378	STRG.53925.1	+	101731440,101731787,101732235	101731468,101731976,101732378	0.769231
suprapubic_skin_male_adult_54_years	chr16	15674023	15674024	15674023	+	RAMPAGE_only	5	5	8	0.559577	2.521641	chr16	15673906	15674036	SINE|MIR|MIR	+	chr16	15672662	15687468	NDE1|ENST00000574163.1	+	15672662,15677800,15687374	15672771,15677949,15687468	0.625000
suprapubic_skin_male_adult_54_years	chr1	44032196	44032197	44032196	-	High_confidence	13	15	16	1.119155	3.640224	chr1	44032158	44032201	SINE|MIR|MIRc	+	chr1	43996482	44031492	SLC6A9|NM_001024845.2	-	43996482,43997854,44000766,44000955,44001163,44001389,44002312,44002511,44002852,44008352,44009964,44010725,44024247,44031305	43997739,43998025,44000867,44001055,44001298,44001627,44002416,44002646,44002985,44008623,44010096,44010882,44024362,44031492	0.812500
suprapubic_skin_male_adult_54_years	chr17	81686144	81686145	81686144	+	High_confidence	5	5	8	0.559577	2.521641	chr17	81685938	81686229	SINE|Alu|AluJb	-	chr17	81686266	81690830	HGS|ENST00000576087.1	+	81686266,81687002,81688703,81690181,81690673	81686387,81687095,81688827,81690234,81690830	0.750000
suprapubic_skin_male_adult_54_years	chr3	197299282	197299308	197299307	-	High_confidence	2	2	8	0.559577	2.807355	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.875000
suprapubic_skin_male_adult_54_years	chr9	39809852	39809865	39809852	-	High_confidence	3	3	13	0.909313	3.418296	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.769231
suprapubic_skin_male_adult_54_years	chr5	60799196	60799210	60799196	-	RAMPAGE_only	3	3	9	0.629524	3.000000	chr5	60798565	60799755	LINE|L1|L1M3	+	chr5	60764229	60802019	STRG.43837.4	-	60764229,60766573,60767822,60771902,60787333,60799179,60800622	60764332,60766630,60767903,60772093,60787431,60799230,60802019	0.777778
suprapubic_skin_male_adult_54_years	chr16	81664287	81664338	81664304	+	RAMPAGE_only	3	3	21	1.468890	3.646439	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.904762
suprapubic_skin_male_adult_54_years	chr12	53464788	53464834	53464833	+	RAMPAGE_only	6	6	32	2.238309	4.002268	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.968750
suprapubic_skin_male_adult_54_years	chr5	50443311	50443319	50443318	-	High_confidence	6	6	16	1.119155	3.373557	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.687500
suprapubic_skin_male_adult_54_years	chr17	40184102	40184126	40184102	+	RAMPAGE_only	2	2	8	0.559577	2.521641	chr17	40183820	40184143	SINE|Alu|AluSx	-	chr17	40177988	40195656	RAPGEFL1|NM_016339.4	+	40177988,40181615,40184213,40184580,40188865,40189207,40190433,40190639,40191315,40191581,40192212,40192605,40192925,40193362,40193663	40178381,40181694,40184349,40184678,40188978,40189375,40190531,40190762,40191494,40191672,40192263,40192693,40192990,40193417,40195656	0.750000
suprapubic_skin_male_adult_54_years	chr3	129399279	129399280	129399279	-	High_confidence	6	7	9	0.629524	2.750000	chr3	129399072	129399375	SINE|Alu|AluSx1	+	chr3	129382921	129399405	RPL32P3|ENST00000510078.5	-	129382921,129393634,129396216,129397039,129399007	129384218,129393795,129396420,129397140,129399405	0.777778
suprapubic_skin_male_adult_54_years	chr5	151669675	151669704	151669675	-	RAMPAGE_only	2	2	11	0.769419	2.721928	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.909091
suprapubic_skin_male_adult_54_years	chr3	11225998	11226026	11226025	+	High_confidence	18	20	38	2.657992	4.458546	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.894737
suprapubic_skin_male_adult_54_years	chr17	41871736	41871748	41871736	-	RAMPAGE_only	2	2	9	0.629524	2.750000	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.666667
suprapubic_skin_male_adult_54_years	chr6	31587009	31587014	31587009	+	High_confidence	10	13	20	1.398943	4.021928	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.900000
suprapubic_skin_male_adult_54_years	chr8	39032698	39032742	39032698	+	RAMPAGE_only	9	9	56	3.917041	5.237354	chr8	39031444	39032803	LINE|L1|L1P2	-	chr8	38997025	39105137	ADAM9|ENST00000481873.7	+	38997025,39007885,39011657,39013964,39016117,39017218,39018852,39021642,39023155,39025802,39026676,39041945,39054480,39055576,39071297,39077227,39082640,39082967,39091258,39101862,39103606	38997160,39007983,39011716,39014043,39016194,39017414,39018918,39021714,39023325,39025884,39026810,39042117,39054573,39055772,39071403,39077411,39082721,39083073,39091346,39101930,39105137	0.767857
suprapubic_skin_male_adult_54_years	chr6	158785848	158785849	158785848	-	RAMPAGE_only	13	13	13	0.909313	3.238901	chr6	158785763	158786085	SINE|Alu|AluJo	+	chr6	158765741	158789474	EZR|ENST00000392177.8	-	158765741,158767260,158769325,158769783,158770763,158771243,158776407,158783519,158784643,158785308,158787107,158789287,158789462	158767078,158767512,158769418,158769944,158770894,158771407,158776504,158783666,158784727,158785583,158787203,158789371,158789474	0.615385
suprapubic_skin_male_adult_54_years	chr14	100291506	100291507	100291506	-	High_confidence	6	6	8	0.559577	3.000000	chr14	100291489	100291554	SINE|MIR|MIR1_Amn	-	chr14	100279958	100291456	AL157871.6|ENST00000553954.1	-	100279958,100291357	100280065,100291456	0.500000
suprapubic_skin_male_adult_54_years	chr11	130199047	130199048	130199047	+	RAMPAGE_only	9	9	13	0.909313	2.719295	chr11	130199074	130199268	DNA|hAT-Tip100|MER91A	+	chr11	130159786	130210362	ST14|NM_021978.3	+	130159786,130188113,130188529,130188868,130189738,130190112,130190453,130194148,130194639,130196338,130196569,130197840,130198307,130198507,130198946,130199950,130208409,130209441,130209661	130160060,130188273,130188657,130188939,130189896,130190148,130190694,130194288,130194737,130196448,130196700,130197945,130198418,130198621,130199069,130200137,130208684,130209578,130210362	1.000000
suprapubic_skin_male_adult_54_years	chr5	95509593	95509600	95509593	-	RAMPAGE_only	2	3	8	0.559577	2.521641	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	0.875000
suprapubic_skin_male_adult_54_years	chr12	53251683	53251711	53251683	+	High_confidence	4	4	9	0.629524	3.000000	chr12	53251547	53251701	SINE|MIR|MIRc	-	chr12	53251652	53253752	MFSD5|ENST00000551660.2	+	53251652,53252817	53252035,53253752	0.888889
suprapubic_skin_male_adult_54_years	chr1	36159597	36159647	36159646	+	RAMPAGE_only	4	5	14	0.979260	3.180833	chr1	36159571	36159833	LINE|L2|L2b	-	chr1	36157214	36172540	MAP7D1|ENST00000530729.1	+	36157214,36170970,36171512,36172463	36157290,36171315,36171581,36172540	0.571429
suprapubic_skin_male_adult_54_years	chr13	29647530	29647557	29647530	+	High_confidence	3	3	10	0.699472	2.725481	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647509	29655360	STRG.98727.1	+	29647509,29655069	29647724,29655360	0.900000
suprapubic_skin_male_adult_54_years	chr1	16951005	16951035	16951007	+	High_confidence	4	6	19	1.328996	3.572431	chr1	16950976	16951061	DNA|hAT-Ac|OldhAT1	+	chr1	16950941	16961078	STRG.1203.6	+	16950941,16953301,16954733,16955311,16955996,16958582,16960757	16951122,16954357,16954877,16955550,16956445,16958750,16961078	0.947368
suprapubic_skin_male_adult_54_years	chr4	69051396	69051431	69051430	+	High_confidence	7	9	25	1.748679	3.555533	chr4	69051337	69051715	LTR|ERV1|Harlequin-int	+	chr4	69051475	69112572	UGT2B7|ENST00000509763.1	+	69051475,69089471,69098539,69102806,69107174,69112456	69051602,69089603,69098688,69102938,69107262,69112572	0.600000
suprapubic_skin_male_adult_54_years	chr19	9140390	9140428	9140393	+	High_confidence	38	38	166	11.611229	6.302853	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	STRG.123937.3	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9158075,9158908,9163408	0.897590
suprapubic_skin_male_adult_54_years	chr2	200889187	200889216	200889187	-	High_confidence	2	2	6	0.419683	2.584963	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200881421	200889157	PPIL3|ENST00000492074.5	-	200881421,200885261,200885697,200886913,200887612,200888955	200881488,200885367,200885772,200886982,200887685,200889157	0.833333
suprapubic_skin_male_adult_54_years	chr3	157381618	157381683	157381682	-	High_confidence	8	10	37	2.588045	4.594456	chr3	157381425	157381750	SINE|Alu|AluSz6	+	chr3	157363691	157381673	VEPH1|ENST00000488772.1	-	157363691,157364302,157381155,157381593	157363761,157364512,157381376,157381673	0.918919
suprapubic_skin_male_adult_54_years	chr1	155228124	155228135	155228124	-	High_confidence	3	3	8	0.559577	2.521641	chr1	155228116	155228267	LINE|L2|L2a	-	chr1	155213824	155227422	GBAP1|ENST00000368374.5	-	155213824,155214567,155215053,155215562,155215761,155216383,155216856,155217239,155217963,155224876,155227381	155214473,155214684,155215162,155215651,155215787,155216621,155217029,155217373,155218049,155225087,155227422	0.500000
suprapubic_skin_male_adult_54_years	chr12	110440311	110440371	110440311	-	RAMPAGE_only	3	3	15	1.049207	3.664498	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.933333
suprapubic_skin_male_adult_54_years	chr14	100138785	100138793	100138792	+	RAMPAGE_only	3	3	7	0.489630	2.807355	chr14	100138741	100139027	LINE|L2|L2b	-	chr14	100019381	100140117	EVL|ENST00000544450.6	+	100019381,100084686,100097480,100123538,100126706,100128518,100129562,100132718,100135904,100137577,100137739	100019687,100084855,100097658,100123602,100126771,100128748,100129684,100132779,100135968,100137644,100140117	0.857143
suprapubic_skin_male_adult_54_years	chr20	18794063	18794086	18794077	+	High_confidence	22	22	81	5.665720	5.305115	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
suprapubic_skin_male_adult_54_years	chr16	89392115	89392116	89392115	-	RAMPAGE_only	4	4	7	0.489630	2.807355	chr16	89391725	89392331	LTR|ERV1|LTR10C	+	chr16	89390303	89396321	STRG.115176.1	-	89390303	89396321	0.857143
suprapubic_skin_male_adult_54_years	chr19	15681931	15681960	15681933	+	High_confidence	3	4	14	0.979260	3.700440	chr19	15681898	15682076	SINE|MIR|MIRb	-	chr19	15681500	15697143	CYP4F12|ENST00000546608.1	+	15681500,15683492,15685067,15695935,15696160,15696907	15682514,15684882,15685197,15696069,15696512,15697143	0.928571
suprapubic_skin_male_adult_54_years	chr1	45522855	45522859	45522858	-	High_confidence	82	82	143	10.002445	6.140885	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.958042
suprapubic_skin_male_adult_54_years	chr1	166850329	166850330	166850329	+	RAMPAGE_only	6	7	8	0.559577	2.750000	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
suprapubic_skin_male_adult_54_years	chr1	155058747	155058785	155058784	+	High_confidence	21	22	56	3.917041	5.001651	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.892857
suprapubic_skin_male_adult_54_years	chr17	39964045	39964135	39964134	+	RAMPAGE_only	5	5	41	2.867834	4.971928	chr17	39963949	39964266	LINE|L2|L2c	-	chr17	39962972	39977766	GSDMA|NM_178171.4	+	39962972,39965682,39966259,39970481,39971523,39972128,39972586,39973809,39974272,39974899,39975923,39976815	39963085,39965901,39966437,39970647,39971620,39972176,39972613,39973830,39974427,39975014,39975997,39977766	0.658537
suprapubic_skin_male_adult_54_years	chr6	6745262	6745263	6745262	-	High_confidence	6	6	8	0.559577	2.750000	chr6	6744950	6746228	LTR|ERV1|LTR12E	-	chr6	6711570	6745164	STRG.50840.1	-	6711570,6744936	6711858,6745164	0.500000
suprapubic_skin_male_adult_54_years	chr1	20639906	20639957	20639956	+	RAMPAGE_only	6	7	26	1.818626	4.056021	chr1	20640002	20640112	LINE|L2|L2b	+	chr1	20638128	20651316	PINK1|ENST00000492302.1	+	20638128,20644489,20645559,20648504,20650433	20639992,20644672,20645723,20649231,20651316	1.000000
suprapubic_skin_male_adult_54_years	chr22	26512099	26512124	26512123	-	High_confidence	4	6	13	0.909313	3.251629	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	0.923077
suprapubic_skin_male_adult_54_years	chr17	19248690	19248720	19248690	+	RAMPAGE_only	4	4	17	1.189102	3.292770	chr17	19248655	19249025	LINE|L2|L2b	-	chr17	19237418	19318482	STRG.116668.6	+	19237418,19246248,19281954,19282949,19309884,19312051,19313104	19245785,19249526,19282077,19283714,19309997,19312144,19318482	0.941176
suprapubic_skin_male_adult_54_years	chr8	129786255	129786286	129786285	-	High_confidence	2	2	8	0.559577	2.521641	chr8	129786052	129786345	SINE|Alu|AluSg7	+	chr8	129704212	129786632	STRG.71371.1	-	129704212,129707047,129728705,129746948,129748445,129749451,129749989,129750430,129751541,129751861,129752105,129752697,129760544,129762625,129765627,129776101,129777367,129786010	129706606,129707182,129728978,129747080,129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752820,129760589,129762731,129765793,129776285,129777591,129786632	0.875000
suprapubic_skin_male_adult_54_years	chr16	20676160	20676162	20676161	-	High_confidence	18	24	30	2.098415	4.593069	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.800000
suprapubic_skin_male_adult_54_years	chr3	112119200	112119267	112119237	+	RAMPAGE_only	3	3	18	1.259049	3.239098	chr3	112119102	112119372	SINE|Alu|AluSq2	+	chr3	112086437	112135359	STRG.30423.2	+	112086437,112093359,112102837,112109542,112112963,112116641,112128232	112086545,112093489,112102965,112109613,112113145,112119562,112135359	0.944444
suprapubic_skin_male_adult_54_years	chr6	89656027	89656053	89656027	-	RAMPAGE_only	2	2	7	0.489630	2.584963	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642655	89664313	STRG.54767.1	-	89642655,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662791	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89662239,89664313	0.714286
suprapubic_skin_male_adult_54_years	chr5	109383446	109383463	109383446	-	High_confidence	4	5	9	0.629524	2.750000	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.888889
suprapubic_skin_male_adult_54_years	chr8	141396232	141396233	141396232	+	RAMPAGE_only	9	9	14	0.979260	3.235926	chr8	141396213	141396373	SINE|MIR|MIRb	-	chr8	141392000	141427570	STRG.71691.1	+	141392000,141421387,141425047,141426938,141427311	141392084,141422345,141425140,141427069,141427570	0.500000
suprapubic_skin_male_adult_54_years	chr22	18149845	18149869	18149868	+	High_confidence	10	10	19	1.328996	3.221097	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
suprapubic_skin_male_adult_54_years	chr4	169697619	169697673	169697672	+	RAMPAGE_only	2	2	10	0.699472	3.121928	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169695630	169706888	CLCN3|ENST00000515420.1	+	169695630,169697188,169697360,169703997,169706867	169695692,169697279,169697734,169704184,169706888	0.600000
suprapubic_skin_male_adult_54_years	chr16	70249899	70249926	70249899	-	RAMPAGE_only	2	2	7	0.489630	2.521641	chr16	70249703	70249976	SINE|Alu|AluSx3	+	chr16	70246777	70251930	EXOSC6|ENST00000435634.2	-	70246777	70251930	1.000000
suprapubic_skin_male_adult_54_years	chr3	101466869	101466875	101466869	-	RAMPAGE_only	3	3	9	0.629524	2.725481	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.777778
suprapubic_skin_male_adult_54_years	chr20	57987757	57987780	57987771	-	High_confidence	2	2	8	0.559577	2.521641	chr20	57987496	57988083	DNA|TcMar-Tigger|Tigger9b	-	chr20	57986217	57987820	STRG.130471.1	-	57986217,57987789	57987139,57987820	0.875000
suprapubic_skin_male_adult_54_years	chr17	69314704	69314707	69314704	-	High_confidence	6	6	11	0.769419	3.121928	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	0.909091
suprapubic_skin_male_adult_54_years	chr11	107441577	107441612	107441611	-	RAMPAGE_only	3	3	10	0.699472	2.947703	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	0.900000
suprapubic_skin_male_adult_54_years	chr5	76811765	76811828	76811811	+	High_confidence	6	6	44	3.077675	4.615809	chr5	76811568	76813693	Retroposon|SVA|SVA_D	+	chr5	76811581	76835315	STRG.44669.2	+	76811581,76832689	76812387,76835315	1.000000
suprapubic_skin_male_adult_54_years	chr14	81192654	81192670	81192654	-	RAMPAGE_only	3	3	8	0.559577	2.807355	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.875000
suprapubic_skin_male_adult_54_years	chr10	102779854	102779855	102779854	+	RAMPAGE_only	12	12	15	1.049207	3.235926	chr10	102779736	102779930	LINE|L2|L2c	-	chr10	102776248	102816267	WBP1L|ENST00000369889.5	+	102776248,102797992,102809892,102812594	102776417,102798095,102810054,102816267	0.800000
suprapubic_skin_male_adult_54_years	chr12	52056963	52057157	52056963	+	High_confidence	10	12	88	6.155351	5.309091	chr12	52056859	52057005	DNA|hAT-Tip100|MER91A	-	chr12	52056688	52059503	STRG.94707.4	+	52056688,52057351,52058687,52059100	52057259,52057530,52059033,52059503	0.534091
suprapubic_skin_male_adult_54_years	chr15	57516588	57516634	57516608	+	RAMPAGE_only	4	6	20	1.398943	3.787144	chr15	57516656	57516717	SINE|MIR|MIR	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.950000
suprapubic_skin_male_adult_54_years	chr11	62600215	62600242	62600215	-	High_confidence	2	2	11	0.769419	3.277613	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.727273
suprapubic_skin_male_adult_54_years	chr6	167271323	167271331	167271330	+	High_confidence	35	36	116	8.113871	6.190877	chr6	167271259	167271341	DNA|hAT-Charlie|MER5A	+	chr6	167271168	167296196	UNC93A|ENST00000503433.5	+	167271168,167291438,167294516,167296031	167271458,167291576,167294698,167296196	0.663793
suprapubic_skin_male_adult_54_years	chr16	57779620	57779621	57779620	-	High_confidence	7	7	7	0.489630	2.521641	chr16	57779538	57779818	SINE|Alu|AluSz	+	chr16	57771635	57779540	KIFC3|ENST00000565351.5	-	57771635,57772222,57779360	57771686,57772288,57779540	0.857143
suprapubic_skin_male_adult_54_years	chr17	59619894	59619923	59619894	+	High_confidence	707	827	2434	170.251401	5.764508	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.945768
suprapubic_skin_male_adult_54_years	chr6	144533112	144533142	144533112	+	RAMPAGE_only	2	2	11	0.769419	3.277613	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144330819	144828851	STRG.57002.2	+	144330819,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789	144331018,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828851	0.909091
suprapubic_skin_male_adult_54_years	chr11	43881128	43881167	43881128	+	High_confidence	2	2	6	0.419683	2.584963	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.666667
suprapubic_skin_male_adult_54_years	chr7	132590544	132590558	132590557	-	High_confidence	4	4	17	1.189102	3.452820	chr7	132590316	132590835	LTR|ERVL|MLT2A2	-	chr7	132180592	132590613	STRG.65073.1	-	132180592,132181380,132182096,132185298,132187470,132194061,132198484,132202645,132203322,132210942,132223526,132226160,132227450,132228345,132241065,132298090,132489291,132507505,132590402	132180732,132181620,132182190,132185463,132187607,132194179,132198636,132202836,132203419,132211143,132223641,132226260,132227604,132228469,132241166,132298222,132489474,132508779,132590613	0.823529
suprapubic_skin_male_adult_54_years	chr1	174817530	174817566	174817541	+	RAMPAGE_only	18	18	65	4.546566	5.388105	chr1	174817300	174818587	LINE|L2|L2c	-	chr1	174799931	174995308	RABGAP1L|ENST00000489615.5	+	174799931,174811831,174957456,174969276,174976077,174978806,174982833,174988640,174989848	174800500,174811960,174957549,174969387,174976182,174978890,174982905,174988838,174995308	0.692308
suprapubic_skin_male_adult_54_years	chr1	8464495	8464523	8464522	-	RAMPAGE_only	2	3	8	0.559577	2.807355	chr1	8464286	8464828	LINE|L2|L2a	+	chr1	8364055	8425212	RERE|ENST00000488215.5	-	8364055,8364745,8365811,8422726,8424787	8364255,8364838,8365974,8422807,8425212	0.875000
suprapubic_skin_male_adult_54_years	chr18	63486631	63486672	63486671	+	High_confidence	3	3	14	0.979260	3.546594	chr18	63486608	63486820	DNA|hAT-Charlie|MER20	+	chr18	63486676	63489463	SERPINB5|ENST00000588986.1	+	63486676,63489346	63487083,63489463	0.857143
suprapubic_skin_male_adult_54_years	chr17	41871799	41871820	41871819	-	RAMPAGE_only	3	4	9	0.629524	2.750000	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.666667
suprapubic_skin_male_adult_54_years	chr6	36505070	36505091	36505090	-	RAMPAGE_only	8	8	16	1.119155	3.906891	chr6	36505057	36505226	DNA|hAT-Charlie|MER5B	+	chr6	36493891	36547470	STK38|ENST00000229812.7	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540207,36547470	0.937500
suprapubic_skin_male_adult_54_years	chr21	46256871	46256893	46256892	-	High_confidence	5	5	13	0.909313	3.418296	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.615385
suprapubic_skin_male_adult_54_years	chr17	19281958	19281990	19281970	+	High_confidence	4	5	16	1.119155	3.906891	chr17	19281937	19282036	LINE|L2|L2a	-	chr17	19281954	19335194	EPN2|ENST00000395620.6	+	19281954,19309884,19312051,19313104,19328710,19329560,19331852,19333955	19283714,19309997,19312144,19313279,19328887,19329647,19332068,19335194	0.937500
suprapubic_skin_male_adult_54_years	chr11	33696930	33696974	33696955	-	High_confidence	38	46	162	11.331441	6.261891	chr11	33696789	33697100	LINE|L2|L2a	+	chr11	33665219	33696701	AL049629.1|ENST00000534431.1	-	33665219,33669523,33670914,33696585	33665564,33669645,33670979,33696701	0.537037
suprapubic_skin_male_adult_54_years	chr17	56412578	56412638	56412601	+	High_confidence	4	4	14	0.979260	3.546594	chr17	56412352	56412894	LTR|ERVL|MLT2A2	+	chr17	56412601	56449091	STRG.118948.1	+	56412601,56440326,56442842,56449078	56412815,56440424,56442965,56449091	0.571429
suprapubic_skin_male_adult_54_years	chr1	166850124	166850241	166850124	+	RAMPAGE_only	28	28	126	8.813343	5.842282	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
suprapubic_skin_male_adult_54_years	chr11	7905902	7905968	7905925	-	High_confidence	38	44	118	8.253766	5.826422	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.737288
suprapubic_skin_male_adult_54_years	chr5	176411455	176411459	176411458	-	RAMPAGE_only	425	507	727	50.851589	7.166317	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.797799
suprapubic_skin_male_adult_54_years	chr10	46383290	46383291	46383290	+	RAMPAGE_only	5	5	8	0.559577	2.807355	chr10	46383092	46383297	SINE|MIR|MIRb	-	chr10	46375726	46390930	ANXA8L1|ENST00000619162.4	+	46375726,46379884,46381145,46382578,46383455,46384205,46384773,46385379,46385711,46387585,46388392,46390870	46375872,46379975,46381240,46382692,46383546,46384285,46384833,46385473,46385807,46387644,46388515,46390930	0.500000
suprapubic_skin_male_adult_54_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	8	9	9	0.629524	2.750000	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.888889
suprapubic_skin_male_adult_54_years	chr2	159428326	159428357	159428356	-	RAMPAGE_only	14	16	39	2.727939	4.926428	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.641026
suprapubic_skin_male_adult_54_years	chr2	201122595	201122596	201122595	+	High_confidence	9	9	11	0.769419	3.459432	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201122476	201130053	CFLAR|ENST00000425030.1	+	201122476,201129728	201122747,201130053	0.636364
suprapubic_skin_male_adult_54_years	chrY	12686530	12686596	12686548	+	RAMPAGE_only	3	3	11	0.769419	3.277613	chrY	12685409	12686624	LTR|ERV1|MER4-int	+	chrY	12701230	12860839	USP9Y|ENST00000338981.7	+	12701230,12708633,12709387,12720588,12722107,12725112,12726574,12735611,12735997,12736410,12738156,12739524,12757191,12758505,12760483,12771067,12773582,12775470,12776648,12778018,12778605,12779525,12786202,12786521,12790406,12791498,12793031,12810178,12810671,12811634,12812829,12816123,12818419,12833687,12837910,12839863,12841009,12842239,12843063,12846332,12846932,12847238,12856339,12856632,12857565,12859278	12702055,12708693,12709543,12720737,12722187,12725225,12726793,12735727,12736249,12736549,12738309,12739629,12757398,12758642,12760617,12771155,12773925,12775566,12776860,12778259,12778755,12779646,12786333,12786800,12790532,12791624,12793201,12810287,12810818,12811781,12813052,12816344,12818610,12833861,12838052,12840614,12841133,12842465,12843193,12846518,12847153,12847327,12856496,12856845,12857661,12860839	0.909091
suprapubic_skin_male_adult_54_years	chr1	155038163	155038176	155038163	+	RAMPAGE_only	4	6	11	0.769419	3.321928	chr1	155038092	155038557	LINE|L2|L2a	-	chr1	155039400	155042107	STRG.8327.2	+	155039400,155040484,155041396,155041713	155039531,155040624,155041613,155042107	0.727273
suprapubic_skin_male_adult_54_years	chr9	42569350	42569371	42569350	-	High_confidence	3	3	14	0.979260	3.700440	chr9	42569304	42569520	LTR|ERV1|MER90a	-	chr9	42567858	42569349	LOC103908605|NR_126050.1	-	42567858,42569028	42568059,42569349	0.714286
suprapubic_skin_male_adult_54_years	chr19	1880074	1880087	1880086	-	High_confidence	7	7	13	0.909313	3.546594	chr19	1880079	1880146	DNA|hAT-Ac|OldhAT1	+	chr19	1877203	1880017	ABHD17A|ENST00000592757.1	-	1877203,1877507,1878663,1879920	1877425,1877687,1878904,1880017	0.846154
suprapubic_skin_male_adult_54_years	chr2	232551052	232551104	232551103	+	High_confidence	5	5	23	1.608785	3.725651	chr2	232551133	232551224	SINE|MIR|MIRb	+	chr2	232550806	232567205	EIF4E2|ENST00000454501.1	+	232550806,232556415,232557883,232564246,232566828,232567077	232551218,232556530,232558018,232564351,232566981,232567205	0.826087
suprapubic_skin_male_adult_54_years	chr1	24123557	24123564	24123557	-	High_confidence	2	4	9	0.629524	3.000000	chr1	24123556	24123782	DNA|hAT-Tip100|MER115	-	chr1	24122584	24123614	STRG.1432.2	-	24122584,24123301	24122794,24123614	0.666667
suprapubic_skin_male_adult_54_years	chr6	167271155	167271176	167271175	+	High_confidence	30	32	65	4.546566	4.405287	chr6	167271035	167271181	DNA|hAT-Charlie|MER5A	+	chr6	167271168	167296196	UNC93A|ENST00000503433.5	+	167271168,167291438,167294516,167296031	167271458,167291576,167294698,167296196	0.892308
suprapubic_skin_male_adult_54_years	chr6	38751280	38751305	38751280	-	High_confidence	6	6	18	1.259049	3.503258	chr6	38750989	38751486	LTR|ERVL-MaLR|MLT1F2	-	chr6	38750675	38751271	STRG.52142.1	-	38750675	38751271	0.611111
suprapubic_skin_male_adult_54_years	chr11	64242548	64242620	64242619	+	High_confidence	7	7	41	2.867834	4.716950	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.975610
suprapubic_skin_male_adult_54_years	chr17	43508343	43508381	43508361	+	RAMPAGE_only	5	5	16	1.119155	3.373557	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43504621	43525670	STRG.118125.4	+	43504621,43507002,43507502,43507808,43508338,43513361,43517166,43520129,43520750,43521368,43522046,43523627,43524347	43504825,43507197,43507688,43508019,43508520,43513502,43517322,43520267,43520879,43521565,43522226,43524308,43525670	0.937500
suprapubic_skin_male_adult_54_years	chr5	170767557	170767558	170767557	-	High_confidence	7	8	10	0.699472	2.725481	chr5	170767455	170767864	LTR|ERV1|LTR7	-	chr5	170757884	170767558	AC008514.1|ENST00000503797.2	-	170757884,170767307	170757978,170767558	0.500000
suprapubic_skin_male_adult_54_years	chr11	12989541	12989546	12989545	-	High_confidence	27	45	70	4.896302	5.816016	chr11	12989406	12989730	LTR|ERVL-MaLR|THE1D	-	chr11	12979533	12989548	LINC00958|NR_038904.1	-	12979533,12989455	12980999,12989548	0.542857
suprapubic_skin_male_adult_54_years	chr19	49086419	49086547	49086546	+	High_confidence	12	12	84	5.875562	5.399957	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.892857
suprapubic_skin_male_adult_54_years	chr1	25820158	25820195	25820194	+	High_confidence	3	3	13	0.909313	3.584963	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.538462
suprapubic_skin_male_adult_54_years	chr12	8788252	8788253	8788252	+	High_confidence	20	21	23	1.608785	4.061482	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.782609
suprapubic_skin_male_adult_54_years	chr20	13814178	13814198	13814178	+	High_confidence	2	2	9	0.629524	2.947703	chr20	13814082	13814204	SINE|MIR|MIR	-	chr20	13814076	13817228	NDUFAF5|ENST00000476200.5	+	13814076,13816462,13816874,13817117	13814515,13816546,13816957,13817228	1.000000
suprapubic_skin_male_adult_54_years	chr7	154928503	154928504	154928503	+	High_confidence	15	16	22	1.538838	4.321928	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.818182
suprapubic_skin_male_adult_54_years	chr3	14017455	14017487	14017486	+	High_confidence	17	24	55	3.847094	5.454087	chr3	14012549	14017955	LINE|L1|L1PB1	-	chr3	14017552	14065984	TPRXL|ENST00000429201.6	+	14017552,14057137,14063378,14064019	14017665,14057184,14063508,14065984	0.581818
suprapubic_skin_male_adult_54_years	chr3	132345019	132345056	132345055	+	RAMPAGE_only	4	4	9	0.629524	2.641604	chr3	132345072	132345309	SINE|MIR|MIR	+	chr3	132352801	132358720	ACPP|ENST00000507647.1	+	132352801,132356685,132358416	132352823,132356855,132358720	0.888889
suprapubic_skin_male_adult_54_years	chr11	67848672	67848720	67848695	-	High_confidence	9	10	33	2.308256	4.262199	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67846900	67848682	STRG.88109.1	-	67846900,67848565	67847989,67848682	0.606061
suprapubic_skin_male_adult_54_years	chr1	51366121	51366144	51366121	-	RAMPAGE_only	4	4	12	0.839366	2.855389	chr1	51366072	51366367	SINE|Alu|AluJb	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.833333
suprapubic_skin_male_adult_54_years	chr19	3062922	3062940	3062924	-	High_confidence	10	18	37	2.588045	4.422001	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.945946
suprapubic_skin_male_adult_54_years	chr1	211548306	211548307	211548306	-	High_confidence	35	35	40	2.797887	4.503056	chr1	211547417	211548345	LINE|L2|L2a	+	chr1	211531634	211548174	STRG.10653.1	-	211531634,211547967	211531908,211548174	0.800000
suprapubic_skin_male_adult_54_years	chr10	59303176	59303189	59303188	-	RAMPAGE_only	5	6	15	1.049207	3.521641	chr10	59302952	59303486	LINE|L2|L2a	+	chr10	59253716	59362460	FAM13C|ENST00000422313.6	-	59253716,59262433,59264084,59268552,59269898,59283362,59302800,59323987,59352269,59355886,59362398	59254443,59262645,59264166,59268691,59270109,59283447,59302864,59324106,59352474,59355943,59362460	0.666667
suprapubic_skin_male_adult_54_years	chr12	123390715	123390761	123390725	+	High_confidence	8	8	52	3.637253	5.224384	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	1.000000
suprapubic_skin_male_adult_54_years	chr20	34534461	34534494	34534491	+	RAMPAGE_only	12	13	62	4.336724	4.909504	chr20	34534306	34534522	SINE|MIR|MIRb	+	chr20	34516454	34540958	DYNLRB1|ENST00000374846.3	+	34516454,34526267,34534627,34540580	34516876,34526343,34534795,34540958	0.983871
suprapubic_skin_male_adult_54_years	chr17	76557840	76557854	76557853	+	High_confidence	6	6	12	0.839366	3.277613	chr17	76557889	76558010	SINE|MIR|MIR	+	chr17	76557791	76565279	SNHG16|ENST00000590435.5	+	76557791,76558944,76561287,76563118,76563972	76557857,76559043,76561398,76563482,76565279	0.833333
suprapubic_skin_male_adult_54_years	chr4	56663949	56664148	56664013	-	RAMPAGE_only	5	8	72	5.036196	5.515669	chr4	56663990	56664122	SINE|MIR|MIRc	+	chr4	56662468	56665694	AC108215.1|ENST00000624463.1	-	56662468	56665694	0.972222
suprapubic_skin_male_adult_54_years	chr3	123493155	123493165	123493155	-	RAMPAGE_only	12	12	23	1.608785	4.152391	chr3	123493072	123493370	SINE|Alu|AluY	+	chr3	123491553	123585185	HACD2|ENST00000383657.9	-	123491553,123500514,123502559,123528385,123567761,123582211,123584872	123494970,123500693,123502681,123528474,123567780,123582329,123585185	0.913043
suprapubic_skin_male_adult_54_years	chr7	128619061	128619077	128619061	+	RAMPAGE_only	4	4	9	0.629524	2.947703	chr7	128619037	128619073	LINE|L2|L2c	-	chr7	128577760	128663548	STRG.64817.2	+	128577760,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294,128629393,128631679,128638773,128642216,128648791,128651037,128651188	128578033,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626530,128629458,128631869,128641379,128642281,128648982,128651095,128663548	1.000000
suprapubic_skin_male_adult_54_years	chrX	20204049	20204095	20204049	-	RAMPAGE_only	6	6	13	0.909313	3.392747	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	1.000000
suprapubic_skin_male_adult_54_years	chr1	154975524	154975546	154975524	+	High_confidence	5	5	12	0.839366	3.095795	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.750000
suprapubic_skin_male_adult_54_years	chrX	53546444	53546454	53546444	-	RAMPAGE_only	6	6	10	0.699472	2.641604	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.900000
suprapubic_skin_male_adult_54_years	chr9	128921399	128921411	128921399	+	High_confidence	17	18	32	2.238309	4.351410	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.937500
suprapubic_skin_male_adult_54_years	chr7	6590236	6590284	6590248	+	High_confidence	8	10	48	3.357464	4.730416	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.916667
suprapubic_skin_male_adult_54_years	chr2	178304567	178304572	178304567	-	High_confidence	10	12	16	1.119155	3.640224	chr2	178304220	178304583	LTR|ERVL-MaLR|THE1C	-	chr2	178255880	178304552	STRG.21333.1	-	178255880,178304303	178256149,178304552	0.937500
suprapubic_skin_male_adult_54_years	chr12	46367606	46367624	46367623	-	High_confidence	7	7	14	0.979260	3.546594	chr12	46367602	46367794	SINE|MIR|MIRc	+	chr12	46364441	46367410	SLC38A2|ENST00000548870.5	-	46364441,46364643,46365106,46366863,46367075,46367266	46364556,46364702,46365189,46366945,46367168,46367410	0.571429
suprapubic_skin_male_adult_54_years	chr1	33021374	33021413	33021381	-	RAMPAGE_only	5	6	23	1.608785	3.624680	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.913043
suprapubic_skin_male_adult_54_years	chr14	73567616	73567617	73567616	+	High_confidence	46	46	48	3.357464	4.751610	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.937500
suprapubic_skin_male_adult_54_years	chr15	82935306	82935337	82935306	-	RAMPAGE_only	2	2	8	0.559577	3.000000	chr15	82934248	82936442	LINE|L2|L2a	+	chr15	82848982	82952721	HOMER2|ENST00000450735.6	-	82848982,82851150,82852141,82854643,82859028,82864166,82875272,82892684,82952530	82849903,82851231,82852252,82854800,82859135,82864259,82875404,82892841,82952721	0.625000
suprapubic_skin_male_adult_54_years	chr1	226685502	226685560	226685502	-	RAMPAGE_only	13	13	69	4.826354	5.034294	chr1	226685320	226685763	LINE|L2|L2c	+	chr1	226631689	226687521	STRG.11337.3	-	226631689,226637678,226639556,226641920,226647166,226648671,226685368	226634886,226637750,226639658,226642125,226647380,226648771,226687521	0.913043
suprapubic_skin_male_adult_54_years	chr4	102431241	102431248	102431247	-	High_confidence	5	5	12	0.839366	3.277613	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.833333
suprapubic_skin_male_adult_54_years	chr12	91179462	91179549	91179462	-	High_confidence	554	585	2248	157.241228	7.633040	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91172527	91179495	DCN|ENST00000550099.5	-	91172527,91178341,91179361	91172868,91178585,91179495	0.508897
suprapubic_skin_male_adult_54_years	chr3	33864052	33864095	33864078	+	High_confidence	3	4	22	1.538838	3.884184	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33863895	33866468	PDCD6IP|ENST00000473593.1	+	33863895,33865242,33866350	33864129,33865430,33866468	0.590909
suprapubic_skin_male_adult_54_years	chr8	61578141	61578142	61578141	+	High_confidence	97	97	98	6.854822	4.784520	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.989796
suprapubic_skin_male_adult_54_years	chr11	107548166	107548191	107548166	+	High_confidence	26	32	56	3.917041	5.270097	chr11	107547970	107548480	LTR|ERVL|LTR79	+	chr11	107548173	107564364	STRG.90103.1	+	107548173,107563559	107548291,107564364	0.821429
suprapubic_skin_male_adult_54_years	chr5	140697919	140697962	140697936	+	RAMPAGE_only	2	2	9	0.629524	2.750000	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140691682	140699248	HARS2|ENST00000642452.1	+	140691682,140693590,140693934,140694184,140695507,140695737,140696028,140696520,140696942,140697163,140697568,140697931,140698492	140691756,140693665,140694054,140694280,140695633,140695845,140696201,140696614,140697070,140697406,140697685,140698078,140699248	0.888889
suprapubic_skin_male_adult_54_years	chr7	64892259	64892526	64892525	+	RAMPAGE_only	32	33	163	11.401388	5.760924	chr7	64892505	64893212	LTR|ERV1|LTR9A1	-	chr7	64882512	64929124	STRG.60816.4	+	64882512,64883233,64897347,64917029,64917580,64918196,64927653	64882785,64893897,64898054,64917118,64917707,64918292,64929124	1.000000
suprapubic_skin_male_adult_54_years	chr20	8600707	8600739	8600738	+	High_confidence	5	5	9	0.629524	2.641604	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600725	8788523	PLCB1|ENST00000626966.2	+	8600725,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8600781,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788523	0.888889
suprapubic_skin_male_adult_54_years	chr11	71745867	71745915	71745881	+	High_confidence	9	9	27	1.888573	4.403856	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745889	71746842	STRG.88270.2	+	71745889,71746570	71746012,71746842	0.777778
suprapubic_skin_male_adult_54_years	chr20	31779615	31779666	31779665	+	RAMPAGE_only	5	5	27	1.888573	4.023146	chr20	31779639	31780006	LINE|L2|L2b	-	chr20	31771575	31801840	STRG.129372.1	+	31771575,31775866,31777486,31778812,31782248,31783704,31792734,31793847,31794401,31797403,31798364,31800969	31771682,31775988,31777638,31778984,31782390,31783921,31792830,31794024,31794548,31797515,31798552,31801840	0.962963
suprapubic_skin_male_adult_54_years	chr3	39407631	39407775	39407682	+	High_confidence	14	14	105	7.344452	5.815719	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.942857
suprapubic_skin_male_adult_54_years	chr18	691411	691412	691411	-	High_confidence	5	5	8	0.559577	2.750000	chr18	691330	691629	SINE|Alu|AluJr	-	chr18	674180	690800	STRG.120634.11	-	674180,675320,677344,677742,678695,683245,685920,690548	674406,675402,677444,677872,678737,683380,688608,690800	0.500000
suprapubic_skin_male_adult_54_years	chr8	143018381	143018434	143018394	-	High_confidence	8	12	50	3.497358	4.900025	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.780000
suprapubic_skin_male_adult_54_years	chr17	2667195	2667196	2667195	+	High_confidence	10	10	10	0.699472	3.321928	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.900000
suprapubic_skin_male_adult_54_years	chr17	28234014	28234048	28234042	-	RAMPAGE_only	8	8	50	3.497358	4.933661	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28230561	28235162	STRG.116824.1	-	28230561,28233917	28233342,28235162	0.760000
suprapubic_skin_male_adult_54_years	chr12	12927723	12927737	12927733	+	High_confidence	84	84	175	12.240754	6.809607	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.588571
suprapubic_skin_male_adult_54_years	chr16	89904141	89904195	89904170	+	High_confidence	2	2	12	0.839366	2.913977	chr16	89904174	89904222	LINE|CR1|L3	+	chr16	89905008	89909174	TCF25|ENST00000563484.1	+	89905008,89906193,89907242,89908965	89905096,89906284,89907322,89909174	0.666667
suprapubic_skin_male_adult_54_years	chr3	52969106	52969160	52969106	-	RAMPAGE_only	3	3	13	0.909313	2.777363	chr3	52968909	52969093	LINE|L2|L2c	-	chr3	52943433	53045317	STRG.28017.3	-	52943433,52954316,52969100,53044945	52943593,52954411,52969258,53045317	0.846154
suprapubic_skin_male_adult_54_years	chr4	152652544	152652568	152652567	-	RAMPAGE_only	3	3	9	0.629524	2.947703	chr4	152652539	152652595	SINE|5S-Deu-L2|AmnSINE1	+	chr4	152628248	152641425	TMEM154|ENST00000510252.1	-	152628248,152640927	152628561,152641425	0.555556
suprapubic_skin_male_adult_54_years	chr11	65433906	65434314	65434285	+	RAMPAGE_only	20	21	304	21.263938	6.649104	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.983553
suprapubic_skin_male_adult_54_years	chr1	212232428	212232458	212232457	-	RAMPAGE_only	4	6	11	0.769419	2.921928	chr1	212232282	212232732	LTR|ERVL|MLT2A2	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	0.909091
suprapubic_skin_male_adult_54_years	chr13	93455182	93455185	93455182	+	RAMPAGE_only	5	5	11	0.769419	3.277613	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.909091
suprapubic_skin_male_adult_54_years	chr19	55069891	55069895	55069891	-	High_confidence	6	6	11	0.769419	3.095795	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55064039	55069892	RDH13|ENST00000587046.1	-	55064039,55069693	55064412,55069892	0.818182
suprapubic_skin_male_adult_54_years	chr3	112404409	112404410	112404409	-	RAMPAGE_only	12	13	18	1.259049	3.969816	chr3	112404337	112404523	LTR|ERV1|LTR8	+	chr3	112346735	112362178	STRG.30385.1	-	112346735,112362042	112347222,112362178	0.500000
suprapubic_skin_male_adult_54_years	chr11	72824437	72824469	72824459	+	RAMPAGE_only	2	2	8	0.559577	2.521641	chr11	72824377	72824488	SINE|MIR|MIRc	-	chr11	72822233	72829595	STRG.88413.3	+	72822233,72822477,72822847,72824059,72825301,72826172,72826517,72826702,72827187,72828358,72828728,72828882	72822295,72822543,72822961,72824842,72825407,72826243,72826589,72826823,72827293,72828508,72828776,72829595	0.875000
suprapubic_skin_male_adult_54_years	chr6	79631273	79631329	79631302	+	High_confidence	97	97	336	23.502248	6.558937	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.985119
suprapubic_skin_male_adult_54_years	chr1	179294637	179294639	179294637	+	High_confidence	3	5	8	0.559577	2.750000	chr1	179294538	179294832	SINE|Alu|AluSz	-	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	1.000000
suprapubic_skin_male_adult_54_years	chr2	72033779	72033826	72033825	-	High_confidence	25	27	70	4.896302	5.674079	chr2	72033068	72034127	LINE|L2|L2a	+	chr2	72010423	72034087	STRG.16498.1	-	72010423,72012955,72013862,72031855,72032404	72010748,72013001,72014043,72032000,72034087	0.800000
suprapubic_skin_male_adult_54_years	chr11	72821147	72821258	72821192	+	RAMPAGE_only	7	9	57	3.986988	4.933556	chr11	72821118	72821264	SINE|MIR|MIRb	+	chr11	72814426	72829633	ATG16L2|ENST00000544490.5	+	72814426,72816727,72817755,72821198,72822043,72822477,72824059,72824733,72825301,72826172,72826517,72826702,72827187,72828358,72828728,72828882,72829302	72814563,72816827,72817855,72821741,72822295,72823797,72824122,72824842,72825407,72826243,72826589,72826823,72827293,72828508,72828776,72828984,72829633	0.947368
suprapubic_skin_male_adult_54_years	chr2	233691673	233691710	233691709	+	High_confidence	37	37	88	6.155351	6.158405	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233691709	233772668	STRG.24384.4	+	233691709,233693003,233767033,233767848,233768219,233772261	233691820,233693865,233767165,233767936,233768439,233772668	0.704545
suprapubic_skin_male_adult_54_years	chrX	152920368	152920405	152920368	+	High_confidence	5	5	12	0.839366	3.418296	chrX	152920417	152920551	SINE|MIR|MIR3	+	chrX	152920348	152973473	ZNF185|ENST00000426821.6	+	152920348,152920706,152922172,152931671,152932872,152938073,152945266,152959698,152963838,152965446,152967166,152969381,152970442,152971273	152920411,152920748,152922256,152931776,152932971,152938163,152945464,152959896,152963949,152965527,152967238,152969484,152970541,152973473	0.833333
suprapubic_skin_male_adult_54_years	chr20	41345544	41345547	41345546	+	RAMPAGE_only	12	19	22	1.538838	4.186704	chr20	41345479	41345635	SINE|MIR|MIR1_Amn	-	chr20	41340971	41360400	LPIN3|ENST00000632009.1	+	41340971,41345795,41347551,41348618,41349088,41349773,41350054,41351820,41352059,41352605,41352797,41354644,41354819,41355895,41357039,41357360,41357881,41358236,41358438,41358721	41341002,41345995,41347647,41348887,41349172,41349894,41350397,41351920,41352220,41352699,41352867,41354737,41354863,41356034,41357188,41357447,41358034,41358351,41358542,41360400	0.909091
suprapubic_skin_male_adult_54_years	chr4	88595579	88595607	88595579	+	RAMPAGE_only	3	5	13	0.909313	3.546594	chr4	88595552	88595664	SINE|MIR|MIR3	+	chr4	88593377	88653088	HERC3|ENST00000452979.5	+	88593377,88595556,88605794,88649839,88652011,88652868	88593494,88595614,88606049,88649999,88652088,88653088	0.846154
suprapubic_skin_male_adult_54_years	chr4	151687156	151687162	151687156	-	High_confidence	3	4	8	0.559577	2.521641	chr4	151687082	151687177	LINE|L2|L2b	+	chr4	151670943	151687083	GATB|ENST00000507592.5	-	151670943,151672761,151679812,151686907	151671302,151672896,151679891,151687083	0.875000
suprapubic_skin_male_adult_54_years	chr13	46097225	46097239	46097225	+	RAMPAGE_only	4	4	9	0.629524	2.947703	chr13	46096795	46098485	LTR|ERVL|ERV3-16A3_I-int	+	chr13	46052901	46113332	CPB2-AS1|ENST00000415033.2	+	46052901,46094852,46098397,46113183	46052965,46095002,46098781,46113332	0.666667
suprapubic_skin_male_adult_54_years	chr6	36369309	36369354	36369309	-	RAMPAGE_only	10	10	26	1.818626	3.449312	chr6	36369227	36369398	SINE|MIR|MIRb	-	chr6	36354090	36387566	ETV7|ENST00000339796.9	-	36354090,36366874,36368928,36371329,36373452,36375870,36385533,36387535	36354687,36366975,36369071,36371560,36373578,36376035,36385669,36387566	0.884615
suprapubic_skin_male_adult_54_years	chr19	20423697	20423702	20423697	-	RAMPAGE_only	4	5	9	0.629524	3.000000	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.777778
suprapubic_skin_male_adult_54_years	chr5	140700445	140700452	140700445	+	High_confidence	363	482	801	56.027679	5.358884	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.970037
suprapubic_skin_male_adult_54_years	chr9	133104465	133104532	133104516	-	High_confidence	3	4	19	1.328996	4.037401	chr9	133104414	133104534	SINE|MIR|MIRc	+	chr9	133102517	133104602	RALGDS|ENST00000471109.1	-	133102517,133102778,133103229,133103746,133104262	133102571,133102900,133103262,133103833,133104602	0.631579
suprapubic_skin_male_adult_54_years	chr17	32684271	32684272	32684271	-	High_confidence	42	43	45	3.147622	4.880180	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32653863	32684284	MYO1D|ENST00000582217.1	-	32653863,32654476,32659114,32684174	32653947,32654621,32659338,32684284	0.644444
suprapubic_skin_male_adult_54_years	chr4	56679539	56679566	56679555	-	RAMPAGE_only	48	48	133	9.302973	4.310314	chr4	56679467	56679777	SINE|Alu|AluSx1	-	chr4	56678757	56681297	HOPX|ENST00000506661.2	-	56678757	56681297	0.962406
suprapubic_skin_male_adult_54_years	chr5	140459344	140459348	140459344	+	High_confidence	3	4	8	0.559577	2.521641	chr5	140459380	140459775	LINE|L1|L1MA7	+	chr5	140459256	140524133	ANKHD1|ENST00000246149.10	+	140459256,140464666,140472238,140482579,140485120,140485588,140487005,140504820,140505121,140505723,140506834,140507784,140509636,140510018,140512827,140513362,140524065	140459355,140464776,140472295,140482667,140485248,140485732,140487060,140504966,140505233,140505869,140506977,140507998,140509812,140510181,140512923,140513479,140524133	0.625000
suprapubic_skin_male_adult_54_years	chr19	55677173	55677174	55677173	+	High_confidence	14	15	17	1.189102	3.616875	chr19	55677165	55677362	SINE|MIR|MIR	+	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.764706
suprapubic_skin_male_adult_54_years	chr19	52169761	52169762	52169761	-	High_confidence	6	6	8	0.559577	2.807355	chr19	52169654	52169811	SINE|Alu|AluJb	+	chr19	52165183	52169734	ZNF836|ENST00000602187.1	-	52165183,52168057,52169647	52165385,52168152,52169734	0.500000
suprapubic_skin_male_adult_54_years	chr12	52679065	52679132	52679085	-	RAMPAGE_only	3	3	19	1.328996	3.932138	chr12	52678940	52679157	DNA|TcMar-Tigger|Tigger19a	-	chr12	52675722	52680404	STRG.94734.27	-	52675722,52676274,52677058,52677315,52677649,52678162,52678541,52679757,52679990	52675744,52676495,52677184,52677480,52677745,52678223,52678756,52679954,52680404	0.578947
suprapubic_skin_male_adult_54_years	chr6	17994506	17994522	17994506	-	RAMPAGE_only	4	4	15	1.049207	3.906891	chr6	17994273	17994502	SINE|MIR|MIR	-	chr6	17759182	17987623	KIF13A|NM_001105568.2	-	17759182,17764154,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571,17796668,17799265,17799951,17804360,17805474,17808767,17817019,17825767,17826037,17828239,17831100,17833960,17836877,17837471,17849376,17850322,17851954,17855436,17856029,17873376,17898167,17987053,17987408	17760877,17764946,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794704,17796820,17799439,17800113,17804510,17805615,17808930,17817233,17825934,17826124,17828370,17831235,17834071,17837090,17837583,17849489,17850457,17852042,17855617,17856122,17873437,17898180,17987144,17987623	0.866667
suprapubic_skin_male_adult_54_years	chr19	21440639	21440673	21440672	-	RAMPAGE_only	4	4	10	0.699472	2.725481	chr19	21440180	21440667	LTR|ERV1|HERV3-int	-	chr19	21433489	21433960	STRG.125041.1	-	21433489	21433960	0.500000
suprapubic_skin_male_adult_54_years	chr8	27977104	27977126	27977125	-	High_confidence	28	31	44	3.077675	4.598652	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27869881	27977115	STRG.67706.2	-	27869881,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977115	0.954545
suprapubic_skin_male_adult_54_years	chr19	11033804	11033836	11033805	+	High_confidence	7	10	16	1.119155	3.373557	chr19	11033706	11034051	SINE|tRNA|LFSINE_Vert	-	chr19	11034122	11066122	SMARCA4|ENST00000586985.2	+	11034122,11034913,11041306,11058254,11058787,11059752,11060044,11065192	11034200,11035132,11041560,11058363,11058889,11059885,11060187,11066122	0.937500
suprapubic_skin_male_adult_54_years	chr9	92720641	92720756	92720755	-	RAMPAGE_only	7	7	55	3.847094	5.134336	chr9	92720689	92720791	DNA|TcMar-Tigger|Tigger19b	-	chr9	92711362	92764801	BICD2|NM_001003800.1	-	92711362,92717796,92718538,92720299,92722655,92729023,92764504	92715463,92717948,92719582,92720755,92722808,92729236,92764801	0.963636
suprapubic_skin_male_adult_54_years	chr9	65665417	65665418	65665417	+	RAMPAGE_only	11	12	16	1.119155	3.375000	chr9	65664607	65666171	LTR|ERVL-MaLR|THE1B-int	+	chr9	65660254	65666528	STRG.75094.1	+	65660254,65666373	65666135,65666528	1.000000
suprapubic_skin_male_adult_54_years	chr2	185425044	185425068	185425044	+	High_confidence	3	3	12	0.839366	3.277613	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185425321	185483249	STRG.21663.1	+	185425321,185434096,185483033	185425507,185434191,185483249	0.666667
suprapubic_skin_male_adult_54_years	chr14	105079769	105079814	105079769	-	High_confidence	22	24	86	6.015456	5.289879	chr14	105078600	105080045	Retroposon|SVA|SVA_D	-	chr14	105078660	105079892	STRG.106368.1	-	105078660	105079892	0.953488
suprapubic_skin_male_adult_54_years	chr14	103848775	103848814	103848813	-	High_confidence	15	18	51	3.567305	5.293661	chr14	103848808	103849048	SINE|MIR|MIRb	+	chr14	103733752	103848801	STRG.106301.2	-	103733752,103736002,103737693,103738678,103738885,103739823,103741789,103742653,103746372,103749793,103752999,103754069,103757649,103778744,103784794,103797370,103848271	103735195,103736202,103737860,103738812,103739023,103740593,103742291,103742823,103746553,103749934,103753196,103754244,103757751,103778821,103784914,103797518,103848801	0.960784
suprapubic_skin_male_adult_54_years	chr4	8436023	8436026	8436025	-	High_confidence	9	17	22	1.538838	4.297079	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366711	8436016	STRG.35514.3	-	8366711,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8435922	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8436016	0.636364
suprapubic_skin_male_adult_54_years	chr12	13044158	13044161	13044158	+	High_confidence	12	12	25	1.748679	4.001823	chr12	13044134	13044231	SINE|MIR|MIRb	-	chr12	13044283	13083449	FAM234B|ENST00000197268.12	+	13044283,13055550,13058450,13061574,13062844,13066639,13067154,13068303,13068629,13071240,13076025,13079788,13080624	13044440,13055946,13058549,13061763,13062975,13066787,13067296,13068447,13068711,13071396,13076143,13080009,13083449	0.920000
suprapubic_skin_male_adult_54_years	chr4	142474388	142474438	142474407	-	High_confidence	15	15	33	2.308256	4.597276	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.909091
suprapubic_skin_male_adult_54_years	chr9	111284874	111284875	111284874	-	High_confidence	7	7	8	0.559577	2.521641	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.875000
suprapubic_skin_male_adult_54_years	chr19	15608040	15608041	15608040	-	High_confidence	48	48	48	3.357464	4.282268	chr19	15607625	15609207	LTR|ERV1|LTR12C	-	chr19	15596756	15607814	STRG.124444.1	-	15596756,15607568	15596956,15607814	0.958333
suprapubic_skin_male_adult_54_years	chr5	148094174	148094274	148094177	+	RAMPAGE_only	10	13	50	3.497358	5.165730	chr5	148094012	148094305	SINE|Alu|AluJo	+	chr5	148090927	148101428	SPINK5|ENST00000476608.1	+	148090927,148091164,148094353,148095817,148097866,148099233,148100453,148101354	148091045,148091228,148094481,148095905,148097994,148099315,148100581,148101428	0.760000
suprapubic_skin_male_adult_54_years	chr14	21360449	21360513	21360449	-	RAMPAGE_only	3	3	22	1.538838	4.221928	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351471	21384266	SUPT16H|ENST00000216297.6	-	21351471,21353487,21353702,21354410,21357196,21357926,21358314,21359483,21360414,21360845,21361077,21362196,21362793,21363033,21363232,21363437,21364826,21365069,21366438,21368268,21369203,21369749,21370335,21371873,21373337,21383861	21352818,21353565,21353832,21354540,21357366,21358002,21358427,21359609,21360533,21360972,21361213,21362324,21362947,21363149,21363328,21363503,21364939,21365143,21366529,21368441,21369355,21369896,21370488,21372044,21373430,21384266	0.909091
suprapubic_skin_male_adult_54_years	chr9	134356247	134356261	134356260	+	RAMPAGE_only	6	6	10	0.699472	2.947703	chr9	134356265	134356363	SINE|MIR|MIRb	+	chr9	134369535	134444300	STRG.78732.2	+	134369535,134382706,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466,134443278	134382575,134386390,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134442798,134444300	0.800000
suprapubic_skin_male_adult_54_years	chr14	55671857	55671859	55671857	+	High_confidence	6	10	14	0.979260	2.896292	chr14	55671902	55672073	DNA|hAT-Charlie|MER5A	+	chr14	55671861	55674304	KTN1|ENST00000555506.1	+	55671861,55672629,55672928	55671877,55672701,55674304	0.571429
suprapubic_skin_male_adult_54_years	chr6	167271210	167271229	167271220	+	High_confidence	2	2	8	0.559577	2.521641	chr6	167271259	167271341	DNA|hAT-Charlie|MER5A	+	chr6	167271168	167296196	UNC93A|ENST00000503433.5	+	167271168,167291438,167294516,167296031	167271458,167291576,167294698,167296196	0.750000
suprapubic_skin_male_adult_54_years	chr13	22040971	22040975	22040971	+	High_confidence	3	3	6	0.419683	2.584963	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.833333
suprapubic_skin_male_adult_54_years	chr12	52171372	52171452	52171412	-	RAMPAGE_only	5	5	66	4.616513	4.977631	chr12	52171321	52171364	LINE|CR1|L3b	-	chr12	52169522	52185749	KRT80|ENST00000466011.1	-	52169522,52171657,52172197,52173037,52173599,52180512,52185378	52171522,52171713,52172418,52173163,52173764,52180963,52185749	1.000000
suprapubic_skin_male_adult_54_years	chr11	47214671	47214674	47214671	+	High_confidence	6	6	10	0.699472	3.321928	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214569	47234653	DDB2|ENST00000614825.4	+	47214569,47215072,47216335,47216857,47232813,47234572	47214674,47215263,47216472,47217049,47232959,47234653	0.700000
suprapubic_skin_male_adult_54_years	chr1	116390280	116390395	116390289	+	RAMPAGE_only	25	27	213	14.898746	5.705751	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.985915
suprapubic_skin_male_adult_54_years	chrX	70453688	70453695	70453688	+	RAMPAGE_only	4	4	10	0.699472	2.921928	chrX	70453648	70453712	DNA|hAT-Ac|OldhAT1	+	chrX	70452304	70505487	DLG3|ENST00000374355.7	+	70452304,70453636,70454213,70479149,70492106,70492520,70493375,70497179,70498519,70499175,70499876,70500470,70500897,70502162	70452755,70453793,70454316,70479264,70492283,70492596,70493475,70497221,70498570,70499277,70500049,70500580,70500989,70505487	1.000000
suprapubic_skin_male_adult_54_years	chr12	55930641	55930642	55930641	+	High_confidence	6	7	7	0.489630	2.807355	chr12	55930357	55930665	SINE|Alu|AluSc8	-	chr12	55930971	55954015	DGKA|ENST00000331886.9	+	55930971,55936422,55937016,55937407,55937977,55938510,55938914,55939185,55939414,55940081,55940313,55940623,55940896,55941251,55941509,55941997,55942173,55951622,55952034,55952340,55952733,55953039,55953349,55953684	55931344,55936567,55937090,55937543,55938052,55938560,55938989,55939305,55939529,55940170,55940433,55940722,55940980,55941325,55941584,55942083,55942263,55951783,55952099,55952431,55952932,55953160,55953410,55954015	0.857143
suprapubic_skin_male_adult_54_years	chr1	207346233	207346315	207346314	+	RAMPAGE_only	12	12	36	2.518098	4.629004	chr1	207345015	207347193	LINE|L1|L1MA4A	-	chr1	207321732	207355308	STRG.10474.7	+	207321732,207322381,207325621,207336692,207337328	207321865,207324750,207331296,207336818,207355308	0.972222
suprapubic_skin_male_adult_54_years	chr14	34536100	34536155	34536100	-	High_confidence	3	3	15	1.049207	3.906891	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.733333
suprapubic_skin_male_adult_54_years	chr2	127765205	127765234	127765205	-	RAMPAGE_only	2	2	9	0.629524	3.169925	chr2	127765110	127765160	LINE|CR1|L3	-	chr2	127701021	127811147	WDR33|ENST00000322313.8	-	127701021,127708676,127709489,127709692,127713582,127717154,127719264,127721835,127722590,127722957,127723252,127724332,127724886,127725060,127726650,127763061,127764827,127765173,127768188,127768932,127770777,127811011	127706552,127708892,127709582,127709856,127714021,127717263,127720353,127721988,127722730,127723044,127723347,127724443,127724965,127725215,127726777,127763159,127764979,127765269,127768293,127769001,127771004,127811147	0.777778
suprapubic_skin_male_adult_54_years	chr5	170267210	170267260	170267210	-	High_confidence	13	13	47	3.287517	4.708987	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.893617
suprapubic_skin_male_adult_54_years	chr2	55618850	55618895	55618850	-	High_confidence	11	12	22	1.538838	3.541446	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.863636
suprapubic_skin_male_adult_54_years	chr13	19239623	19239643	19239642	-	High_confidence	19	19	66	4.616513	4.876310	chr13	19239586	19239800	LTR|ERVL-MaLR|MLT1F	-	chr13	19218512	19240223	STRG.98389.1	-	19218512,19227247,19239532,19240200	19219775,19227432,19239783,19240223	0.878788
suprapubic_skin_male_adult_54_years	chr1	174874418	174874458	174874418	+	High_confidence	5	5	15	1.049207	3.589898	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.866667
suprapubic_skin_male_adult_54_years	chr17	17912877	17912911	17912904	-	High_confidence	5	9	26	1.818626	3.973661	chr17	17911651	17913237	Retroposon|SVA|SVA_D	-	chr17	17893677	17912950	STRG.116501.7	-	17893677,17898595,17907446,17912251	17893810,17898674,17907531,17912950	0.923077
suprapubic_skin_male_adult_54_years	chr10	14877061	14877073	14877061	+	RAMPAGE_only	5	10	22	1.538838	4.106603	chr10	14876839	14877141	LINE|L2|L2	-	chr10	14878782	14904315	SUV39H2|NR_034181.1	+	14878782,14896845,14899538,14901132,14902405	14878919,14897517,14899685,14901262,14904315	0.863636
suprapubic_skin_male_adult_54_years	chr2	71139665	71139666	71139665	+	RAMPAGE_only	6	6	6	0.419683	2.584963	chr2	71139578	71139748	DNA|hAT-Charlie|MER5A	-	chr2	71144239	71149287	MPHOSPH10|ENST00000476969.1	+	71144239,71147998,71149222	71144538,71148106,71149287	0.666667
suprapubic_skin_male_adult_54_years	chr7	128622517	128622538	128622517	+	High_confidence	3	3	11	0.769419	2.921928	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128623416	128663548	STRG.64817.4	+	128623416,128626294,128629393,128631206,128631679,128638773,128640744,128642216,128648791,128651037,128651188	128623781,128626530,128629458,128631323,128631869,128638897,128641379,128642281,128648982,128651095,128663548	0.636364
suprapubic_skin_male_adult_54_years	chr2	73982163	73982169	73982163	-	High_confidence	9	9	19	1.328996	3.794653	chr2	73982060	73982404	LINE|L2|L2c	-	chr2	73957966	73981439	DGUOK-AS1|NR_104030.1	-	73957966,73981134	73958207,73981439	0.578947
suprapubic_skin_male_adult_54_years	chr1	179273212	179273213	179273212	+	High_confidence	141	144	187	13.080120	6.107077	chr1	179273172	179273276	LINE|L2|L2c	-	chr1	179273224	179342944	STRG.9493.3	+	179273224,179302676,179323436,179335505,179337836,179339437,179341027,179342113,179342861	179273240,179302802,179323495,179335657,179337896,179339545,179341310,179342192,179342944	0.989305
suprapubic_skin_male_adult_54_years	chr11	65439325	65439580	65439579	+	RAMPAGE_only	46	48	293	20.494519	6.592657	chr11	65439400	65439684	SINE|Alu|AluSz6	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.996587
suprapubic_skin_male_adult_54_years	chr10	47743694	47743747	47743727	+	High_confidence	6	7	24	1.678732	4.386842	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.500000
suprapubic_skin_male_adult_54_years	chr4	76234500	76234519	76234518	-	High_confidence	11	11	36	2.518098	4.704511	chr4	76234334	76234657	LTR|ERV1|MER61A	-	chr4	76158759	76234536	SCARB2|ENST00000638295.1	-	76158759,76163224,76166249,76168402,76169866,76174143,76175790,76176436,76179516,76180953,76195706,76234302	76161751,76163383,76166301,76168476,76169985,76174313,76175910,76176528,76179705,76181101,76195864,76234536	0.833333
suprapubic_skin_male_adult_54_years	chr3	52615417	52615444	52615443	-	High_confidence	4	4	9	0.629524	2.725481	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.777778
suprapubic_skin_male_adult_54_years	chr19	24042383	24042384	24042383	+	High_confidence	35	35	35	2.448151	4.957854	chr19	24041131	24042696	LTR|ERV1|LTR12C	+	chr19	24042016	24061932	STRG.125221.2	+	24042016,24046183,24049404	24043109,24046279,24061932	0.942857
suprapubic_skin_male_adult_54_years	chr9	89479889	89479890	89479889	-	High_confidence	5	5	7	0.489630	2.584963	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	0.857143
suprapubic_skin_male_adult_54_years	chr22	41940217	41940222	41940221	-	High_confidence	6	7	14	0.979260	3.546594	chr22	41939903	41940386	LINE|L2|L2a	+	chr22	41938720	41940219	CENPM|NM_001110215.2	-	41938720,41940138	41939196,41940219	0.785714
suprapubic_skin_male_adult_54_years	chr9	108639958	108639980	108639958	-	High_confidence	12	13	37	2.588045	4.558814	chr9	108639757	108640012	LTR|ERVL-MaLR|MLT1L	-	chr9	108638998	108639980	STRG.77223.1	-	108638998	108639980	0.918919
suprapubic_skin_male_adult_54_years	chr3	161282613	161282628	161282613	-	High_confidence	5	5	21	1.468890	3.984184	chr3	161282195	161282741	LTR|ERVL|MLT2A2	-	chr3	161279599	161282605	STRG.32994.1	-	161279599	161282605	0.904762
suprapubic_skin_male_adult_54_years	chr16	21048703	21048704	21048703	-	RAMPAGE_only	14	16	17	1.189102	3.875000	chr16	21042672	21048703	LINE|L1|L1PA2	-	chr16	20996858	21063000	DNAH3|ENST00000572640.5	-	20996858,21000223,21003103,21019623,21021970,21024595,21027026,21031044,21033973,21036713,21037760,21039851,21042026,21049568,21049909,21051669,21054419,21058085,21060263,21062481,21062771	20997462,21000518,21003207,21019869,21022100,21024701,21027127,21031286,21034085,21036848,21037980,21039943,21042203,21049682,21050018,21051868,21054534,21058196,21060356,21062683,21063000	0.588235
suprapubic_skin_male_adult_54_years	chr12	109878996	109879022	109878996	+	RAMPAGE_only	34	34	98	6.854822	5.930837	chr12	109878962	109879076	SINE|MIR|MIRb	-	chr12	109900263	109905027	TCHP|ENST00000537218.1	+	109900263,109903026,109903936,109904736	109900426,109903214,109904147,109905027	0.714286
suprapubic_skin_male_adult_54_years	chr12	123617863	123617864	123617863	+	High_confidence	5	6	7	0.489630	2.521641	chr12	123617854	123617910	LINE|RTE-X|L4_A_Mam	-	chr12	123618015	123620422	DDX55|ENST00000421670.3	+	123618015,123619431,123619963	123618837,123619724,123620422	1.000000
suprapubic_skin_male_adult_54_years	chr15	89899929	89899954	89899929	-	RAMPAGE_only	3	3	8	0.559577	2.500000	chr15	89899539	89900004	LINE|L2|L2	+	chr15	89896531	89912687	ARPIN|NM_001282380.1	-	89896531,89903215,89903776,89908279,89910743,89912051	89901803,89903379,89903983,89908412,89910819,89912687	1.000000
suprapubic_skin_male_adult_54_years	chr2	201116007	201116024	201116018	+	High_confidence	4	4	16	1.119155	3.875000	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	1.000000
suprapubic_skin_male_adult_54_years	chr3	122800237	122800238	122800237	+	RAMPAGE_only	8	8	10	0.699472	2.725481	chr3	122799141	122801328	LINE|L2|L2a	-	chr3	122795083	122879748	DIRC2|ENST00000477647.1	+	122795083,122826799,122833316,122845762,122856306,122860074,122872414,122879262	122795535,122827065,122833446,122845871,122856374,122860202,122872597,122879748	0.600000
suprapubic_skin_male_adult_54_years	chr6	118651548	118651626	118651625	-	High_confidence	9	9	54	3.777147	5.046283	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	1.000000
suprapubic_skin_male_adult_54_years	chr1	25244030	25244129	25244078	-	High_confidence	9	9	47	3.287517	3.690213	chr1	25244059	25244116	SINE|Alu|Alu	-	chr1	25242248	25244105	RSRP1|ENST00000569495.5	-	25242248,25242538,25243549	25242426,25242705,25244105	1.000000
suprapubic_skin_male_adult_54_years	chr20	3866862	3866863	3866862	+	RAMPAGE_only	17	17	24	1.678732	4.175736	chr20	3866894	3867070	SINE|MIR|MIRb	+	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.916667
suprapubic_skin_male_adult_54_years	chr11	120125954	120126000	120125999	-	RAMPAGE_only	3	3	18	1.259049	3.683542	chr11	120125991	120126114	SINE|MIR|MIR3	+	chr11	120112409	120128913	TRIM29|ENST00000529044.5	-	120112409,120115337,120118222,120120572,120122953,120125690,120127335,120128399,120128647	120112476,120115414,120118321,120120665,120123055,120125889,120127569,120128495,120128913	0.555556
suprapubic_skin_male_adult_54_years	chr19	58306114	58306116	58306115	+	High_confidence	6	11	14	0.979260	3.238901	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.571429
suprapubic_skin_male_adult_54_years	chr2	101998968	101998993	101998977	+	High_confidence	13	13	45	3.147622	5.030633	chr2	101998446	101999045	LTR|ERVL-MaLR|MLT1H1	-	chr2	101998961	102028423	IL1R2|NR_048564.1	+	101998961,102008514,102009561,102015870,102019637,102022186,102024532,102026110,102028225	101999116,102008642,102009826,102016051,102019812,102022249,102024668,102026253,102028423	0.844444
suprapubic_skin_male_adult_54_years	chr16	63618045	63618046	63618045	-	High_confidence	55	70	79	5.525826	5.466049	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.759494
suprapubic_skin_male_adult_54_years	chr12	3215241	3215282	3215241	+	High_confidence	2	2	10	0.699472	2.921928	chr12	3215284	3215474	SINE|MIR|MIRc	+	chr12	3215250	3281281	TSPAN9|ENST00000431374.6	+	3215250,3278420,3278991,3280381,3281197	3215355,3278612,3279066,3280483,3281281	0.500000
suprapubic_skin_male_adult_54_years	chr9	127522783	127522834	127522793	-	RAMPAGE_only	4	4	15	1.049207	3.506891	chr9	127522529	127523072	LINE|L2|L2a	+	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	1.000000
suprapubic_skin_male_adult_54_years	chr6	42403667	42403673	42403667	-	RAMPAGE_only	8	8	18	1.259049	3.175123	chr6	42403232	42403669	LTR|ERVL-MaLR|MLT1C	+	chr6	42228125	42451261	TRERF1|ENST00000372917.8	-	42228125,42232680,42236204,42243247,42246455,42254850,42256727,42256962,42258134,42259338,42264703,42265750,42268153,42269498,42300637,42362946,42451176	42228669,42232892,42236411,42243361,42246544,42254926,42256831,42257102,42258201,42259723,42264854,42265797,42269251,42269848,42300749,42363079,42451261	0.888889
suprapubic_skin_male_adult_54_years	chr7	107580245	107580267	107580264	+	High_confidence	351	351	1691	118.280657	7.211431	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.945003
suprapubic_skin_male_adult_54_years	chr3	33838205	33838281	33838261	+	RAMPAGE_only	4	7	28	1.958521	4.363713	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.857143
suprapubic_skin_male_adult_54_years	chr17	43508424	43508443	43508424	+	RAMPAGE_only	6	6	16	1.119155	3.773557	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43504621	43525670	STRG.118125.4	+	43504621,43507002,43507502,43507808,43508338,43513361,43517166,43520129,43520750,43521368,43522046,43523627,43524347	43504825,43507197,43507688,43508019,43508520,43513502,43517322,43520267,43520879,43521565,43522226,43524308,43525670	0.937500
suprapubic_skin_male_adult_54_years	chr12	27030201	27030247	27030201	+	High_confidence	3	3	16	1.119155	3.202820	chr12	27030124	27030371	SINE|Alu|AluJr	-	chr12	27030259	27030673	MED21|ENST00000621885.1	+	27030259	27030673	0.937500
suprapubic_skin_male_adult_54_years	chr12	31121301	31121302	31121301	-	RAMPAGE_only	9	9	9	0.629524	2.503258	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.777778
suprapubic_skin_male_adult_54_years	chr7	142862080	142862112	142862111	+	High_confidence	5	5	14	0.979260	3.182006	chr7	142861936	142862309	LTR|ERVL-MaLR|MLT1A0	-	chr7	142862034	142871087	EPHB6|ENST00000611578.4	+	142862034,142862755,142863126,142863630,142863965,142864533,142865474,142865959,142866480,142866940,142867607,142867996,142868240,142868491,142868973,142869816,142870213,142870529,142870795	142862133,142862833,142863327,142863695,142864262,142864749,142865630,142866316,142866605,142867068,142867722,142868049,142868360,142868739,142869147,142869966,142870407,142870685,142871087	0.785714
suprapubic_skin_male_adult_54_years	chr16	3129660	3129669	3129668	-	RAMPAGE_only	4	4	8	0.559577	2.521641	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3128832	3132042	ZNF213-AS1|ENST00000573447.1	-	3128832,3131746	3129653,3132042	0.625000
suprapubic_skin_male_adult_54_years	chr7	64897942	64897943	64897942	+	RAMPAGE_only	7	7	10	0.699472	2.947703	chr7	64897708	64898026	SINE|Alu|AluY	-	chr7	64903241	64931577	ZNF273|NR_003099.1	+	64903241,64917029,64917580,64918196,64927653	64903419,64917118,64917707,64918292,64931577	0.800000
suprapubic_skin_male_adult_54_years	chr7	37353636	37353678	37353636	-	High_confidence	13	13	28	1.958521	4.450212	chr7	37353223	37353900	LTR|ERV1|LTR12_	-	chr7	36852905	37353668	ELMO1|NM_001206482.1	-	36852905,36861658,36870392,36878009,36887559,36894853,37013298,37096618,37133129,37211385,37213334,37216644,37222614,37224878,37233094,37244355,37259180,37271831,37314849,37315919,37342612,37353031	36855751,36861736,36870475,36878117,36887672,36895017,37013435,37096727,37133234,37211517,37213457,37216695,37222693,37225030,37233194,37244391,37259350,37271882,37314922,37315960,37342763,37353668	1.000000
suprapubic_skin_male_adult_54_years	chr1	226685645	226685675	226685674	-	RAMPAGE_only	7	7	47	3.287517	4.621603	chr1	226685320	226685763	LINE|L2|L2c	+	chr1	226631689	226687521	STRG.11337.3	-	226631689,226637678,226639556,226641920,226647166,226648671,226685368	226634886,226637750,226639658,226642125,226647380,226648771,226687521	0.914894
suprapubic_skin_male_adult_54_years	chr3	50312730	50312791	50312762	-	High_confidence	42	51	206	14.409116	6.156758	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50085439	50312859	STRG.27804.6	-	50085439,50312366	50085460,50312859	0.626214
suprapubic_skin_male_adult_54_years	chr17	51153846	51153871	51153846	+	High_confidence	3	3	12	0.839366	2.594907	chr17	51153887	51153974	LINE|L2|L2c	+	chr17	51154043	51155759	NME1|ENST00000456492.1	+	51154043,51155650	51154444,51155759	0.583333
suprapubic_skin_male_adult_54_years	chr19	51350328	51350382	51350368	-	RAMPAGE_only	3	3	15	1.049207	3.373557	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
suprapubic_skin_male_adult_54_years	chr18	63587309	63587346	63587345	+	High_confidence	12	12	52	3.637253	5.315824	chr18	63587176	63587346	DNA|hAT-Charlie|MER5B	-	chr18	63587365	63599199	SERPINB13|ENST00000344731.9	+	63587365,63588650,63589655,63592347,63592853,63594354,63595028,63596958	63587450,63588832,63589715,63592476,63592971,63594497,63595184,63599199	0.769231
suprapubic_skin_male_adult_54_years	chr2	241235134	241235139	241235134	-	RAMPAGE_only	2	3	6	0.419683	2.584963	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241230774	241236664	HDLBP|ENST00000470482.5	-	241230774,241233819,241235120,241235489,241236614	241230944,241233963,241235275,241235594,241236664	0.666667
suprapubic_skin_male_adult_54_years	chr10	133369992	133370002	133370001	-	RAMPAGE_only	4	6	13	0.909313	3.084963	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.923077
suprapubic_skin_male_adult_54_years	chr12	52675074	52675375	52675111	-	RAMPAGE_only	2329	2670	12941	905.186268	6.515398	chr12	52675091	52675148	LINE|RTE-BovB|MamRTE1	-	chr12	52674735	52680407	KRT1|NM_006121.3	-	52674735,52675709,52676274,52677058,52677315,52677649,52678162,52678541,52679757	52675617,52675744,52676495,52677184,52677480,52677745,52678223,52678756,52680407	0.997682
suprapubic_skin_male_adult_54_years	chr19	10825202	10825215	10825214	+	RAMPAGE_only	3	4	8	0.559577	3.000000	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	1.000000
suprapubic_skin_male_adult_54_years	chr17	7139215	7139220	7139215	-	RAMPAGE_only	28	29	46	3.217570	4.624093	chr17	7139009	7139390	LTR|ERVL-MaLR|MLT1A	-	chr17	7107838	7115700	ASGR2|ENST00000574868.1	-	7107838,7108461,7108771,7114116,7114614,7115053,7115640	7107907,7108557,7108888,7114310,7114811,7115522,7115700	0.608696
suprapubic_skin_male_adult_54_years	chr16	81181295	81181331	81181330	-	High_confidence	22	22	49	3.427411	4.997064	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.938776
suprapubic_skin_male_adult_54_years	chr1	209429061	209429288	209429209	+	High_confidence	17	17	198	13.849539	6.515248	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429303	209432407	STRG.10554.7	+	209429303,209430424,209432203	209429408,209431825,209432407	0.752525
suprapubic_skin_male_adult_54_years	chr1	153967484	153967496	153967486	+	High_confidence	7	12	19	1.328996	3.721612	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.842105
suprapubic_skin_male_adult_54_years	chr12	9407491	9407507	9407506	-	RAMPAGE_only	16	20	29	2.028468	4.254525	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9398354	9414851	AC141557.1|ENST00000540982.1	-	9398354,9400235,9402426,9414802	9398484,9400326,9402556,9414851	0.517241
suprapubic_skin_male_adult_54_years	chr15	33194665	33194749	33194708	-	High_confidence	12	14	45	3.147622	4.970573	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.866667
suprapubic_skin_male_adult_54_years	chr19	51027559	51027668	51027667	-	High_confidence	49	49	327	22.872723	7.068522	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.785933
suprapubic_skin_male_adult_54_years	chr10	119579284	119579286	119579285	-	High_confidence	4	9	10	0.699472	3.169925	chr10	119579075	119579340	SINE|Alu|AluSz	+	chr10	119577474	119578940	TIAL1|ENST00000495821.1	-	119577474,119577640,119578725	119577535,119577736,119578940	0.500000
suprapubic_skin_male_adult_54_years	chr5	150498216	150498221	150498220	+	High_confidence	8	10	14	0.979260	3.664498	chr5	150498149	150498389	SINE|MIR|MIR	+	chr5	150497926	150521323	NDST1|ENST00000518299.1	+	150497926,150520867	150498239,150521323	0.571429
suprapubic_skin_male_adult_54_years	chr5	152838463	152838488	152838463	+	High_confidence	9	9	28	1.958521	4.392747	chr5	152838206	152839158	LTR|ERV1|LTR1D	-	chr5	152838470	152859967	STRG.48657.1	+	152838470,152859791	152838832,152859967	0.785714
suprapubic_skin_male_adult_54_years	chr3	152334973	152335017	152335016	+	RAMPAGE_only	3	3	7	0.489630	2.521641	chr3	152335017	152335180	DNA|DNA|UCON8	+	chr3	152329886	152465203	STRG.32519.5	+	152329886,152414940,152432716,152445281,152447619,152455541,152456266,152459270,152462384	152338673,152415111,152432920,152445539,152447773,152455577,152456361,152459345,152465203	1.000000
suprapubic_skin_male_adult_54_years	chr11	57794012	57794073	57794012	+	RAMPAGE_only	5	5	22	1.538838	4.095795	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.954545
suprapubic_skin_male_adult_54_years	chr17	60887052	60887094	60887083	+	High_confidence	4	4	17	1.189102	3.852169	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.823529
suprapubic_skin_male_adult_54_years	chr7	64917066	64917095	64917069	+	RAMPAGE_only	4	4	23	1.608785	4.277613	chr7	64917079	64917228	DNA|hAT-Charlie|MER5A1	+	chr7	64903287	64930966	ZNF273|ENST00000395375.3	+	64903287,64917029,64917580,64918196,64927653	64903419,64917118,64917707,64918292,64930966	0.913043
suprapubic_skin_male_adult_54_years	chr1	171517770	171517814	171517813	+	RAMPAGE_only	2	2	7	0.489630	2.521641	chr1	171517862	171517949	DNA|hAT-Charlie|Charlie4a	+	chr1	171512031	171593511	PRRC2C|ENST00000426496.6	+	171512031,171513000,171514535,171515733,171517590,171522176,171523220,171523434,171524820,171527790,171532342,171535427,171536028,171537262,171539970,171545478,171550085,171557239,171561017,171566232,171566591,171568246,171571319,171574926,171577433,171579353,171579827,171583955,171584418,171587002,171587647,171588378,171591586	171512200,171513172,171514645,171515859,171517814,171522259,171523354,171523522,171524965,171527844,171532961,171535597,171536278,171537473,171542229,171545687,171550240,171558143,171561103,171566421,171566843,171568339,171571421,171575128,171577637,171579466,171579964,171584187,171584526,171587221,171587751,171588505,171593511	1.000000
suprapubic_skin_male_adult_54_years	chr19	46180663	46180692	46180663	-	High_confidence	3	4	18	1.259049	3.725481	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46163892	46180647	AC006262.2|ENST00000599127.1	-	46163892,46164577,46173933,46179485,46180604	46164216,46164651,46174052,46179537,46180647	0.666667
suprapubic_skin_male_adult_54_years	chr7	47401159	47401203	47401196	-	RAMPAGE_only	6	6	34	2.378204	4.418201	chr7	47401190	47401377	LINE|CR1|L3b	-	chr7	47369496	47403425	TNS3|ENST00000469470.1	-	47369496,47396799,47400392,47400784,47403267	47369621,47396904,47400458,47400914,47403425	0.676471
suprapubic_skin_male_adult_54_years	chr7	98921643	98921650	98921643	+	RAMPAGE_only	3	3	8	0.559577	2.750000	chr7	98921384	98921675	SINE|Alu|AluSq2	-	chr7	98900679	99013243	TRRAP|ENST00000456197.1	+	98900679,98903378,98906176,98908727,98910055,98910509,98911076,98912021,98915722,98917422,98921752,98925111,98927166,98929988,98930632,98931404,98933240,98935578,98937155,98937649,98942948,98945746,98945929,98948220,98948565,98949416,98949659,98950063,98950875,98953166,98955097,98956145,98956398,98957980,98959343,98961260,98962301,98964628,98965695,98967040,98967484,98970111,98971798,98976148,98976482,98976938,98978210,98978768,98981768,98983263,98984092,98984943,98988764,98990454,98992136,98993537,98994586,99004189,99005130,99008376,99011051,99011340,99012070	98900720,98903517,98906255,98908962,98910419,98910607,98911271,98912213,98915888,98917679,98921953,98925263,98927366,98930206,98930830,98931665,98933402,98935675,98937277,98937820,98943017,98945800,98945950,98948340,98948685,98949581,98949841,98950262,98951004,98953433,98955304,98956304,98956533,98958091,98959490,98961474,98962427,98964775,98965895,98967162,98967698,98970291,98971945,98976268,98976770,98977076,98978323,98978904,98981960,98983459,98984358,98985044,98988966,98990619,98992227,98993737,98994848,99004415,99005348,99008561,99011255,99011535,99013243	0.500000
suprapubic_skin_male_adult_54_years	chr14	106845850	106845874	106845858	-	RAMPAGE_only	5	5	10	0.699472	3.169925	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106810441	106811131	IGHV3-74|ENST00000424969.2	-	106810441,106810849	106810746,106811131	0.500000
suprapubic_skin_male_adult_54_years	chr14	82642614	82642624	82642614	+	High_confidence	2	2	10	0.699472	3.121928	chr14	82642501	82642782	LTR|ERV1|MER61B	+	chr14	82642631	82706825	LINC02301|ENST00000555150.5	+	82642631,82650923,82685379,82687313,82694789,82706700	82642674,82650996,82685431,82687369,82694868,82706825	0.600000
suprapubic_skin_male_adult_54_years	chr20	3795728	3795764	3795759	+	High_confidence	2	2	8	0.559577	2.807355	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.875000
suprapubic_skin_male_adult_54_years	chr19	34986034	34986057	34986034	+	RAMPAGE_only	5	5	10	0.699472	3.121928	chr19	34985609	34986081	LINE|L1|L1MEd	-	chr19	34994783	35026471	GRAMD1A|NM_001320036.1	+	34994783,34995993,35009118,35009422,35009887,35010091,35010283,35011473,35013255,35013540,35014188,35015826,35019190,35019390,35021501,35021690,35021950,35023235,35023426,35026048	34994825,34996291,35009329,35009443,35009972,35010195,35010379,35011554,35013368,35013691,35014387,35015967,35019309,35019533,35021605,35021864,35022038,35023343,35023547,35026471	1.000000
suprapubic_skin_male_adult_54_years	chr19	46203082	46203083	46203082	-	High_confidence	47	49	49	3.427411	3.886427	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.755102
suprapubic_skin_male_adult_54_years	chr8	144103564	144103584	144103564	-	High_confidence	4	4	8	0.559577	2.500000	chr8	144103289	144103558	SINE|MIR|MIR	-	chr8	144098636	144103756	STRG.71803.3	-	144098636,144098865,144099080,144099509,144099702,144099928,144103050,144103552	144098788,144098994,144099430,144099618,144099844,144100069,144103225,144103756	1.000000
suprapubic_skin_male_adult_54_years	chr15	75347037	75347066	75347037	+	High_confidence	3	3	13	0.909313	3.392747	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.538462
suprapubic_skin_male_adult_54_years	chr14	21020090	21020091	21020090	-	High_confidence	7	7	11	0.769419	2.921928	chr14	21020013	21020322	SINE|Alu|AluSg4	+	chr14	21017994	21020109	NDRG2|ENST00000557416.5	-	21017994,21018203,21018456,21018626,21018762,21019115,21019638,21019919	21018038,21018239,21018504,21018663,21018814,21019160,21019742,21020109	0.909091
suprapubic_skin_male_adult_54_years	chr6	36248357	36248360	36248357	-	High_confidence	7	8	22	1.538838	3.879664	chr6	36248284	36248483	SINE|MIR|MIR	-	chr6	36247628	36248358	STRG.52082.1	-	36247628,36248273	36248115,36248358	0.636364
suprapubic_skin_male_adult_54_years	chr1	75375882	75375895	75375885	-	High_confidence	43	44	114	7.973977	5.008721	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75210925	75375874	STRG.4900.1	-	75210925,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75375874	0.894737
suprapubic_skin_male_adult_54_years	chr7	43059512	43059516	43059512	-	RAMPAGE_only	3	4	7	0.489630	2.521641	chr7	43059096	43065116	LINE|L1|L1PA2	+	chr7	42971540	43113931	AC005537.1|ENST00000629291.2	-	42971540,43028337,43044546,43113623	42972848,43028395,43044620,43113931	0.571429
suprapubic_skin_male_adult_54_years	chr1	205891200	205891213	205891212	+	High_confidence	8	8	16	1.119155	3.750000	chr1	205891197	205893986	LTR|ERVK|HERVK9-int	+	chr1	205891020	205895240	STRG.10401.1	+	205891020,205894167	205891309,205895240	0.812500
suprapubic_skin_male_adult_54_years	chr1	78620057	78620058	78620057	+	High_confidence	4	7	7	0.489630	2.521641	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	1.000000
suprapubic_skin_male_adult_54_years	chr11	18706911	18706930	18706911	+	High_confidence	2	2	6	0.419683	2.584963	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18706630	18709057	STRG.86281.3	+	18706630,18708408	18707393,18709057	0.833333
suprapubic_skin_male_adult_54_years	chr1	21875638	21875641	21875640	-	RAMPAGE_only	6	14	18	1.259049	3.969816	chr1	21875470	21875616	SINE|MIR|MIRb	-	chr1	21822231	21937297	HSPG2|NM_005529.6	-	21822231,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174,21937154	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896310,21937297	0.888889
suprapubic_skin_male_adult_54_years	chr7	6257768	6257798	6257790	-	High_confidence	6	6	29	2.028468	3.728502	chr7	6257761	6258020	LTR|ERVL-MaLR|MLT1L	-	chr7	6165733	6258278	STRG.58581.2	-	6165733,6170534,6170829,6171201,6173652,6177822,6187049,6187656,6190448,6256495	6165810,6170646,6170978,6171314,6173733,6177941,6187116,6187721,6190531,6258278	1.000000
suprapubic_skin_male_adult_54_years	chr16	72627719	72627736	72627719	-	High_confidence	2	3	7	0.489630	2.807355	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72479750	72627686	LINC01572|ENST00000563770.5	-	72479750,72491903,72523331,72540577,72555264,72570434,72617182,72627534	72479790,72491966,72523415,72540611,72555326,72570515,72617234,72627686	0.571429
suprapubic_skin_male_adult_54_years	chr3	37058844	37058887	37058886	-	RAMPAGE_only	5	6	28	1.958521	4.161978	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.892857
suprapubic_skin_male_adult_54_years	chr9	120844779	120844780	120844779	+	High_confidence	7	7	9	0.629524	2.725481	chr9	120844709	120844922	DNA|TcMar-Tigger|Tigger7	+	chr9	120845201	120851498	CUTALP|ENST00000640907.1	+	120845201,120847293,120851237	120845473,120847353,120851498	0.777778
suprapubic_skin_male_adult_54_years	chr8	56559496	56559497	56559496	-	High_confidence	23	23	23	1.608785	4.262692	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56496245	56559586	LINC00968|ENST00000519144.5	-	56496245,56520120,56559557	56496333,56520567,56559586	0.521739
suprapubic_skin_male_adult_54_years	chr1	6639906	6640028	6639933	-	RAMPAGE_only	3	3	32	2.238309	4.240224	chr1	6639724	6639885	SINE|MIR|MIR	-	chr1	6634167	6645057	DNAJC11|ENST00000465508.5	-	6634167,6636116,6637197,6637446,6639901,6644557,6645040	6635700,6636246,6637340,6638364,6640057,6644674,6645057	0.937500
suprapubic_skin_male_adult_54_years	chr17	61952981	61953008	61952981	-	RAMPAGE_only	7	7	18	1.259049	2.939829	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	61983306	STRG.119187.3	-	61942604,61946916,61950824,61952964,61955381,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197	61946600,61947017,61950998,61953113,61955567,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983306	0.944444
suprapubic_skin_male_adult_54_years	chr22	18149935	18149965	18149935	+	High_confidence	2	2	10	0.699472	2.503258	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.900000
suprapubic_skin_male_adult_54_years	chr15	68284888	68284890	68284888	+	RAMPAGE_only	4	7	9	0.629524	2.750000	chr15	68284715	68285060	LTR|ERVL-MaLR|THE1B	+	chr15	68289254	68290073	FEM1B|ENST00000566739.1	+	68289254,68289606	68289361,68290073	0.777778
suprapubic_skin_male_adult_54_years	chr5	127770523	127770528	127770527	+	RAMPAGE_only	5	5	14	0.979260	3.235926	chr5	127770400	127770772	LTR|ERVL-MaLR|MLT1K-int	+	chr5	127703388	127941517	CCDC192|NM_001317938.1	+	127703388,127707708,127754267,127797102,127798105,127875537,127941181	127703507,127707760,127754375,127797234,127798162,127875661,127941517	0.857143
suprapubic_skin_male_adult_54_years	chr7	64999443	64999444	64999443	-	High_confidence	78	83	90	6.295245	5.714391	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64974451	64999823	STRG.60851.1	-	64974451,64981386,64981983,64989946,64999120	64979536,64981482,64982116,64993414,64999823	0.933333
suprapubic_skin_male_adult_54_years	chr8	27286792	27286811	27286792	-	RAMPAGE_only	3	3	9	0.629524	2.750000	chr8	27286694	27287214	LTR|ERVL|MER74A	+	chr8	27284885	27311319	TRIM35|NM_171982.4	-	27284885,27289161,27290155,27294079,27298463,27310800	27288127,27289280,27290178,27294310,27298559,27311319	0.888889
suprapubic_skin_male_adult_54_years	chr15	41997345	41997346	41997345	-	High_confidence	7	7	9	0.629524	2.947703	chr15	41997306	41997526	SINE|MIR|MIRb	+	chr15	41981583	41997522	PLA2G4E|ENST00000547930.5	-	41981583,41984435,41985838,41987171,41988048,41989414,41990120,41992736,41995359,41997123	41983974,41984619,41986005,41987375,41988156,41989552,41990235,41992959,41995496,41997522	0.555556
suprapubic_skin_male_adult_54_years	chr10	110881128	110881184	110881130	+	High_confidence	4	6	19	1.328996	4.037401	chr10	110881075	110881155	DNA|TcMar-Mariner|MADE2	+	chr10	110880318	110887798	PDCD4|ENST00000492932.5	+	110880318,110881232,110883002,110885252,110887664	110880485,110881535,110883097,110885366,110887798	0.947368
suprapubic_skin_male_adult_54_years	chr13	45206631	45206634	45206633	+	High_confidence	22	34	34	2.378204	3.632053	chr13	45206646	45206717	SINE|MIR|MIRb	+	chr13	45206354	45267333	GTF2F2|ENST00000494087.5	+	45206354,45252870,45267232	45207505,45252970,45267333	0.941176
suprapubic_skin_male_adult_54_years	chr8	30812435	30812454	30812453	-	High_confidence	6	6	20	1.398943	4.021928	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785615	30812597	PPP2CB|ENST00000518564.1	-	30785615,30799716,30812319	30785989,30799755,30812597	0.500000
suprapubic_skin_male_adult_54_years	chr3	136991823	136991824	136991823	+	RAMPAGE_only	5	5	8	0.559577	2.521641	chr3	136991603	136991909	SINE|Alu|AluSx1	-	chr3	136980473	137011079	IL20RB|ENST00000475972.1	+	136980473,136982159,136986693,136989440,136991937,136995413,137010112	136980592,136982350,136986784,136989565,136992088,136995556,137011079	0.750000
suprapubic_skin_male_adult_54_years	chr7	141738034	141738068	141738034	-	High_confidence	2	2	8	0.559577	2.750000	chr7	141737808	141738038	SINE|Alu|AluJb	-	chr7	141723901	141737775	WEE2-AS1|ENST00000486906.1	-	141723901,141727991,141737382	141724024,141728145,141737775	1.000000
suprapubic_skin_male_adult_54_years	chr4	81154211	81154222	81154211	-	High_confidence	11	13	23	1.608785	3.663533	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.956522
suprapubic_skin_male_adult_54_years	chr16	30354653	30354684	30354683	-	High_confidence	5	8	20	1.398943	3.784184	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.950000
suprapubic_skin_male_adult_54_years	chr18	46087015	46087061	46087042	-	High_confidence	4	4	14	0.979260	3.807355	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.785714
suprapubic_skin_male_adult_54_years	chr10	103746763	103746800	103746799	+	High_confidence	4	5	14	0.979260	3.392747	chr10	103746609	103747070	LINE|L2|L2b	+	chr10	103746792	103754466	SH3PXD2A-AS1|ENST00000625265.1	+	103746792,103749781,103753843	103747096,103749920,103754466	0.500000
suprapubic_skin_male_adult_54_years	chrX	19647778	19647820	19647784	-	High_confidence	106	115	261	18.256210	6.640207	chrX	19647773	19647939	DNA|hAT-Charlie|MER5A	+	chrX	19534026	19647785	STRG.136465.3	-	19534026,19537716,19541924,19545921,19549973,19569102,19588642,19592066,19594948,19607937,19631863,19645399,19647477	19536458,19537780,19542193,19546050,19550083,19569188,19588802,19592147,19595000,19608045,19631958,19645475,19647785	0.950192
suprapubic_skin_male_adult_54_years	chr7	128641006	128641007	128641006	+	High_confidence	6	6	9	0.629524	2.750000	chr7	128640990	128641042	LTR|ERVL|LTR41	+	chr7	128641240	128660998	LINC01000|NR_024368.1	+	128641240,128642216,128648791,128651037,128651188	128641379,128642281,128648982,128651095,128660998	0.888889
suprapubic_skin_male_adult_54_years	chr19	19794050	19794102	19794050	-	RAMPAGE_only	2	3	11	0.769419	3.121928	chr19	19794027	19794322	SINE|Alu|AluSq2	+	chr19	19787644	19821692	STRG.124772.3	-	19787644,19790946,19806030,19806941,19821600	19789679,19795660,19806126,19807068,19821692	0.909091
suprapubic_skin_male_adult_54_years	chr16	2757801	2757944	2757847	+	High_confidence	19	20	139	9.722656	6.211185	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.985612
suprapubic_skin_male_adult_54_years	chr17	4187108	4187146	4187108	-	High_confidence	10	13	31	2.168362	4.306257	chr17	4187012	4187196	LINE|L1|L1PB2	-	chr17	4183525	4187109	ANKFY1|ENST00000574736.1	-	4183525,4183811,4184817,4186893	4183551,4183910,4185046,4187109	0.806452
suprapubic_skin_male_adult_54_years	chr11	7879701	7879714	7879713	-	High_confidence	3	3	7	0.489630	2.521641	chr11	7879349	7879907	LTR|ERV1|ERV24B_Prim-int	-	chr11	7853628	7880492	STRG.85772.8	-	7853628,7879006,7879594	7854963,7879083,7880492	0.714286
suprapubic_skin_male_adult_54_years	chr13	23834309	23834334	23834322	-	RAMPAGE_only	8	8	16	1.119155	3.773557	chr13	23834262	23834584	LINE|L2|L2b	+	chr13	23730188	23889419	MIPEP|ENST00000382172.3	-	23730188,23756544,23760095,23805949,23809849,23836239,23837551,23839648,23841334,23858859,23862301,23864140,23869291,23870012,23874845,23879267,23881698,23886332,23889131	23730445,23756618,23760217,23806069,23809924,23836349,23837756,23839726,23841488,23858912,23862362,23864189,23869448,23870195,23874909,23879354,23881787,23886506,23889419	0.562500
suprapubic_skin_male_adult_54_years	chr3	129488060	129488061	129488060	+	High_confidence	8	8	8	0.559577	3.000000	chr3	129487859	129488081	LINE|L2|L2c	-	chr3	129488190	129502764	IFT122|ENST00000507221.1	+	129488190,129495445,129499901,129502710	129488397,129495607,129500068,129502764	0.500000
suprapubic_skin_male_adult_54_years	chr1	100233671	100233672	100233671	-	RAMPAGE_only	12	12	12	0.839366	3.418296	chr1	100233544	100234128	LTR|ERV1|LTR10C	-	chr1	100210542	100249820	DBT|ENST00000370131.3	-	100210542,100214816,100215982,100218625,100230732,100235435,100240760,100249769	100211124,100214983,100216199,100218747,100230914,100235511,100240884,100249820	0.750000
suprapubic_skin_male_adult_54_years	chr12	21472448	21472449	21472448	-	RAMPAGE_only	6	6	6	0.419683	2.584963	chr12	21472270	21472755	LTR|ERV1|MER66D	-	chr12	21469801	21501551	RECQL|ENST00000421138.6	-	21469801,21470968,21471427,21473550,21474840,21475467,21475675,21476910,21477802,21483375,21486478,21490198,21491518,21499554,21501169,21501412	21470346,21471098,21471647,21473642,21474979,21475585,21475824,21476992,21477969,21483574,21486585,21490378,21491716,21499615,21501215,21501551	1.000000
suprapubic_skin_male_adult_54_years	chr11	75262658	75262659	75262658	-	High_confidence	12	12	15	1.049207	3.323231	chr11	75262587	75262812	SINE|MIR|MIRc	-	chr11	75260128	75262466	AP001972.5|ENST00000624624.1	-	75260128	75262466	0.933333
suprapubic_skin_male_adult_54_years	chr5	95838199	95838256	95838234	+	RAMPAGE_only	9	9	58	4.056936	5.334455	chr5	95838186	95838666	LTR|Gypsy|MamGyp-int	+	chr5	95852231	95860133	LINC01554|NR_026936.1	+	95852231,95856877,95858803	95852714,95856981,95860133	0.586207
suprapubic_skin_male_adult_54_years	chr1	12356414	12356456	12356414	+	High_confidence	11	12	35	2.448151	3.285190	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12356350	12510346	VPS13D|ENST00000646411.1	+	12356350,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12356524,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	0.857143
suprapubic_skin_male_adult_54_years	chr7	134527596	134527597	134527596	+	High_confidence	50	51	65	4.546566	5.144859	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.969231
suprapubic_skin_male_adult_54_years	chr3	125971038	125971073	125971043	+	High_confidence	4	4	13	0.909313	3.392747	chr3	125970793	125971346	LINE|L1|L1MEd	-	chr3	125971055	125983451	STRG.31109.2	+	125971055,125972042,125975562,125977003,125982269,125983253	125971162,125972170,125975680,125977165,125982445,125983451	0.538462
suprapubic_skin_male_adult_54_years	chr3	14017360	14017388	14017383	+	High_confidence	3	3	11	0.769419	3.095795	chr3	14012549	14017955	LINE|L1|L1PB1	-	chr3	14017400	14065985	TPRXL|ENST00000424053.5	+	14017400,14063378,14064024	14017665,14063508,14065985	1.000000
suprapubic_skin_male_adult_54_years	chr6	127330835	127330870	127330835	-	High_confidence	2	3	9	0.629524	3.000000	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.666667
suprapubic_skin_male_adult_54_years	chr8	12522764	12522814	12522813	+	RAMPAGE_only	18	18	84	5.875562	4.801001	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12521534	12567055	STRG.67009.2	+	12521534,12530942,12565885	12522846,12531031,12567055	0.880952
suprapubic_skin_male_adult_54_years	chr7	142862026	142862042	142862026	+	High_confidence	2	3	10	0.699472	3.169925	chr7	142861936	142862309	LTR|ERVL-MaLR|MLT1A0	-	chr7	142862034	142871087	EPHB6|ENST00000611578.4	+	142862034,142862755,142863126,142863630,142863965,142864533,142865474,142865959,142866480,142866940,142867607,142867996,142868240,142868491,142868973,142869816,142870213,142870529,142870795	142862133,142862833,142863327,142863695,142864262,142864749,142865630,142866316,142866605,142867068,142867722,142868049,142868360,142868739,142869147,142869966,142870407,142870685,142871087	0.600000
suprapubic_skin_male_adult_54_years	chr1	54850845	54851070	54850845	-	RAMPAGE_only	13	15	114	7.973977	6.023208	chr1	54850787	54850913	SINE|MIR|MIR3	-	chr1	54849663	54886890	DHCR24|ENST00000648712.1	-	54849663,54853433,54854036,54865302,54871349,54875092,54875941,54879059,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54879319,54883773,54886890	1.000000
suprapubic_skin_male_adult_54_years	chr20	44696111	44696112	44696111	-	High_confidence	6	8	8	0.559577	2.750000	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.500000
suprapubic_skin_male_adult_54_years	chr11	8138593	8138594	8138593	-	High_confidence	12	12	17	1.189102	3.452820	chr11	8138547	8139126	LTR|ERV1|LTR10C	+	chr11	8110243	8138559	RIC3|ENST00000524799.5	-	8110243,8110658,8126658,8137377,8138271	8110407,8111137,8126804,8137471,8138559	0.941176
suprapubic_skin_male_adult_54_years	chr4	106255601	106255611	106255610	-	RAMPAGE_only	5	5	11	0.769419	3.095795	chr4	106255209	106256798	LTR|ERV1|MER52A	-	chr4	106232943	106316209	STRG.39339.5	-	106232943,106233587,106235268,106236389,106236758,106242469,106244625,106247138,106250417,106251865,106254946,106262097,106295093,106308767,106315930	106233064,106233650,106235367,106236519,106236808,106242569,106244764,106248982,106250478,106252007,106260510,106262212,106295166,106308989,106316209	1.000000
suprapubic_skin_male_adult_54_years	chr22	50756869	50756882	50756869	+	High_confidence	2	2	6	0.419683	2.584963	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	1.000000
suprapubic_skin_male_adult_54_years	chr19	16093409	16093416	16093409	+	RAMPAGE_only	4	4	8	0.559577	2.521641	chr19	16093184	16093492	SINE|Alu|AluSx4	-	chr19	16088710	16102946	TPM4|ENST00000591645.2	+	16088710,16089044,16093535,16093683,16101263	16088849,16089120,16093598,16093753,16102946	0.750000
suprapubic_skin_male_adult_54_years	chr1	155378330	155378354	155378353	-	RAMPAGE_only	3	3	9	0.629524	2.725481	chr1	155378311	155378369	LINE|CR1|L3	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
suprapubic_skin_male_adult_54_years	chr16	27545317	27545342	27545317	-	RAMPAGE_only	3	3	11	0.769419	3.277613	chr16	27544962	27545276	SINE|Alu|AluSz6	-	chr16	27460677	27549906	GTF3C1|ENST00000356183.8	-	27460677,27462293,27463540,27464319,27465259,27469290,27470107,27471747,27476450,27478468,27481078,27483043,27484210,27485996,27488226,27488553,27489042,27489601,27492337,27492616,27493198,27494762,27495210,27497636,27498629,27501190,27502858,27505898,27506846,27508539,27511748,27528597,27533290,27537783,27538179,27545313,27549669	27461562,27462486,27463592,27464836,27465540,27469550,27470395,27471920,27476544,27478531,27481191,27483125,27484353,27486154,27488415,27488635,27489178,27489743,27492515,27492713,27493296,27494908,27495492,27497821,27498733,27501344,27502995,27506116,27507156,27508655,27511901,27528721,27533387,27537927,27538356,27545523,27549906	1.000000
suprapubic_skin_male_adult_54_years	chr16	67571250	67571251	67571250	+	High_confidence	5	5	7	0.489630	2.584963	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.857143
suprapubic_skin_male_adult_54_years	chr7	104757709	104757713	104757709	-	High_confidence	8	8	14	0.979260	3.182006	chr7	104757029	104758365	LINE|L1|L1PA16	+	chr7	104738596	104757748	LHFPL3-AS1|ENST00000433514.5	-	104738596,104744049,104752714,104757608	104738984,104744180,104752803,104757748	0.928571
suprapubic_skin_male_adult_54_years	chr2	29114158	29114219	29114173	+	High_confidence	12	13	64	4.476619	5.202820	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.718750
suprapubic_skin_male_adult_54_years	chr20	34519418	34519441	34519440	+	RAMPAGE_only	2	2	7	0.489630	2.584963	chr20	34519417	34519502	SINE|Alu|AluJb	+	chr20	34516454	34540958	DYNLRB1|ENST00000374846.3	+	34516454,34526267,34534627,34540580	34516876,34526343,34534795,34540958	0.857143
suprapubic_skin_male_adult_54_years	chr7	101308269	101308317	101308316	+	High_confidence	7	8	49	3.427411	4.688722	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.959184
suprapubic_skin_male_adult_54_years	chr19	21151124	21151125	21151124	+	RAMPAGE_only	7	7	7	0.489630	2.521641	chr19	21151048	21151341	SINE|Alu|AluSc8	-	chr19	21142076	21183158	ZNF431|ENST00000598331.1	+	21142076,21143550,21151078,21166334,21167570,21182622	21142186,21143643,21151198,21166461,21167666,21183158	0.714286
suprapubic_skin_male_adult_54_years	chr5	133124484	133124488	133124484	-	High_confidence	241	244	348	24.341614	4.887020	chr5	133124115	133124701	LTR|ERVL|MLT2B3	-	chr5	133111377	133124488	STRG.47420.1	-	133111377,133124228	133111507,133124488	0.956897
suprapubic_skin_male_adult_54_years	chr9	129489063	129489126	129489125	+	High_confidence	5	5	35	2.448151	4.558051	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.857143
suprapubic_skin_male_adult_54_years	chr5	113105918	113105924	113105918	-	High_confidence	50	51	133	9.302973	5.852010	chr5	113105908	113106075	DNA|hAT-Charlie|MER5B	+	chr5	113097419	113105906	STRG.46711.7	-	113097419,113104191,113105873	113101945,113104355,113105906	0.864662
suprapubic_skin_male_adult_54_years	chr11	75771007	75771053	75771021	+	RAMPAGE_only	8	8	35	2.448151	4.843569	chr11	75771043	75771145	LINE|CR1|L3	+	chr11	75769000	75800364	DGAT2|ENST00000604733.5	+	75769000,75790187,75790660,75796327,75797157,75798226,75800353	75769112,75790295,75790731,75796532,75797332,75798429,75800364	0.685714
suprapubic_skin_male_adult_54_years	chr12	16353884	16353885	16353884	+	High_confidence	6	6	6	0.419683	2.584963	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.666667
suprapubic_skin_male_adult_54_years	chr20	45833293	45833321	45833305	-	High_confidence	3	3	15	1.049207	3.182006	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.933333
suprapubic_skin_male_adult_54_years	chr7	7929738	7929760	7929759	+	RAMPAGE_only	2	2	6	0.419683	2.584963	chr7	7929292	7929826	LINE|L2|L2a	-	chr7	7968742	8089080	GLCCI1|NM_138426.3	+	7968742,8003907,8022482,8055432,8060095,8070920,8084896,8086192	7969807,8004059,8022569,8055549,8060248,8071131,8085017,8089080	0.500000
suprapubic_skin_male_adult_54_years	chr18	63486756	63486802	63486792	+	High_confidence	5	5	20	1.398943	3.821928	chr18	63486608	63486820	DNA|hAT-Charlie|MER20	+	chr18	63486676	63489463	SERPINB5|ENST00000588986.1	+	63486676,63489346	63487083,63489463	0.650000
suprapubic_skin_male_adult_54_years	chr8	18063185	18063198	18063185	-	High_confidence	3	3	8	0.559577	2.807355	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.875000
suprapubic_skin_male_adult_54_years	chr20	52105665	52105666	52105665	-	High_confidence	7	10	11	0.769419	2.921928	chr20	52105641	52105800	DNA|hAT-Charlie|MER5A1	-	chr20	52084010	52105644	ZFP64|ENST00000371523.8	-	52084010,52088391,52097372,52098437,52105131	52085266,52088643,52097435,52098587,52105644	0.909091
suprapubic_skin_male_adult_54_years	chr15	60574071	60574242	60574166	-	RAMPAGE_only	74	75	246	17.207003	6.242601	chr15	60574132	60574332	SINE|MIR|MIRb	+	chr15	60488283	60592517	STRG.108729.12	-	60488283,60499891,60500958,60502759,60503534,60505507,60511225,60514615,60531765,60547041,60592352	60497619,60500004,60501069,60502867,60503667,60505629,60511621,60514757,60531851,60592303,60592517	1.000000
suprapubic_skin_male_adult_54_years	chr3	197546731	197546733	197546731	-	High_confidence	14	24	30	2.098415	4.161406	chr3	197546665	197546787	SINE|MIR|MIR3	+	chr3	197545437	197547332	STRG.34598.12	-	197545437,197547134	197546486,197547332	0.766667
suprapubic_skin_male_adult_54_years	chr11	118241603	118241617	118241603	-	RAMPAGE_only	10	10	18	1.259049	3.969816	chr11	118241373	118241624	SINE|MIR|MIR	+	chr11	118229237	118252347	MPZL3|ENST00000527472.1	-	118229237,118233459,118235423,118237049,118240210,118252221	118229920,118233523,118235589,118237260,118240341,118252347	0.611111
suprapubic_skin_male_adult_54_years	chr10	93431409	93431497	93431496	-	RAMPAGE_only	5	5	28	1.958521	4.253434	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	1.000000
suprapubic_skin_male_adult_54_years	chr11	123060135	123060256	123060255	-	High_confidence	27	28	187	13.080120	5.448351	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.588235
suprapubic_skin_male_adult_54_years	chr1	147173223	147173250	147173225	+	High_confidence	3	4	10	0.699472	2.725481	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.900000
suprapubic_skin_male_adult_54_years	chr19	9621492	9621592	9621591	+	High_confidence	16	16	119	8.323713	6.139178	chr19	9621594	9621665	SINE|Alu|FLAM_C	+	chr19	9621516	9634862	ZNF561-AS1|ENST00000587536.5	+	9621516,9626783,9632227,9633459	9621645,9626860,9632417,9634862	0.714286
suprapubic_skin_male_adult_54_years	chr1	6208681	6208682	6208681	-	High_confidence	286	286	287	20.074836	4.254814	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.975610
suprapubic_skin_male_adult_54_years	chr20	34132114	34132143	34132137	+	RAMPAGE_only	20	22	84	5.875562	5.249282	chr20	34131810	34133679	Retroposon|SVA|SVA_D	+	chr20	34135498	34136446	STRG.129468.1	+	34135498	34136446	0.666667
suprapubic_skin_male_adult_54_years	chr2	72088483	72088488	72088483	-	High_confidence	274	292	602	42.108194	5.109657	chr2	72088481	72089105	LTR|ERV1|MER41B	+	chr2	72088185	72088472	STRG.16531.1	-	72088185	72088472	0.867110
suprapubic_skin_male_adult_54_years	chr18	61652303	61652309	61652303	+	High_confidence	271	306	449	31.406277	6.141270	chr18	61652260	61652563	SINE|Alu|AluJr	-	chr18	61652312	61662578	STRG.122643.1	+	61652312,61661979,61662224	61652403,61662076,61662578	0.830735
suprapubic_skin_male_adult_54_years	chr4	168337286	168337345	168337290	-	RAMPAGE_only	12	12	38	2.657992	4.859641	chr4	168337176	168338563	LINE|L2|L2a	+	chr4	168216290	168318807	DDX60|NM_017631.5	-	168216290,168220654,168221729,168224242,168225528,168236251,168237285,168237690,168246417,168248187,168250953,168252508,168255710,168260864,168261999,168262682,168267581,168267840,168268853,168272042,168273278,168273933,168275344,168276014,168280334,168283445,168284819,168285392,168287047,168288173,168291747,168293786,168302299,168306378,168308005,168310997,168311255,168318621	168217032,168220717,168221881,168224385,168225676,168236373,168237427,168237795,168246618,168248292,168251106,168252656,168255869,168260989,168262128,168262787,168267691,168267983,168268969,168272138,168273398,168274083,168275503,168276181,168280590,168283606,168284935,168285498,168287203,168288315,168291906,168293945,168302416,168306720,168308195,168311067,168311365,168318807	0.631579
suprapubic_skin_male_adult_54_years	chr19	20750350	20750382	20750362	-	RAMPAGE_only	10	10	60	4.196830	5.375222	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746922	20755250	AC010329.1|ENST00000593903.1	-	20746922	20755250	0.966667
suprapubic_skin_male_adult_54_years	chr5	34244736	34244760	34244736	-	High_confidence	3	3	15	1.049207	2.896292	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34245007	STRG.42910.7	-	34175821,34179012,34182679,34218294,34244615	34175957,34179097,34182867,34218450,34245007	0.733333
suprapubic_skin_male_adult_54_years	chr14	81192566	81192623	81192622	-	RAMPAGE_only	8	8	13	0.909313	3.546594	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.923077
suprapubic_skin_male_adult_54_years	chr3	135965718	135965765	135965723	+	High_confidence	44	82	474	33.154956	6.523705	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.983122
suprapubic_skin_male_adult_54_years	chr11	3477038	3477079	3477072	-	High_confidence	12	12	55	3.847094	5.046283	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3476113	3477080	STRG.85479.1	-	3476113,3476942	3476373,3477080	0.672727
suprapubic_skin_male_adult_54_years	chr21	38817963	38817974	38817973	+	RAMPAGE_only	6	6	12	0.839366	3.277613	chr21	38817983	38818117	SINE|MIR|MIRb	+	chr21	38805950	38824955	STRG.132684.3	+	38805950,38813002,38814272,38814780,38817007,38819502,38821585,38822673	38810106,38813114,38814392,38814981,38818646,38819766,38821704,38824955	0.666667
suprapubic_skin_male_adult_54_years	chr19	46180850	46180868	46180862	-	High_confidence	119	119	425	29.727545	6.661558	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46163892	46180647	AC006262.2|ENST00000599127.1	-	46163892,46164577,46173933,46179485,46180604	46164216,46164651,46174052,46179537,46180647	0.600000
suprapubic_skin_male_adult_54_years	chr1	12348954	12348962	12348954	+	RAMPAGE_only	3	6	12	0.839366	3.277613	chr1	12348985	12349026	LINE|L2|L2a	+	chr1	12299280	12373848	VPS13D|ENST00000460333.5	+	12299280,12304505,12308430,12311453,12311812,12314114,12318071,12319496,12321808,12322535,12323705,12327647,12329828,12333225,12335704,12341779,12342898,12345373,12346604,12348822,12353973,12355898,12356397,12358458,12362719,12363071,12368467,12369466,12373749	12299384,12304728,12308641,12311625,12311925,12314327,12318337,12319630,12321964,12322746,12323780,12327854,12329918,12333366,12335827,12341885,12343051,12345509,12346652,12349374,12354221,12356090,12356524,12358601,12362850,12363247,12368591,12369702,12373848	0.916667
suprapubic_skin_male_adult_54_years	chr8	124673341	124673382	124673346	-	High_confidence	10	10	46	3.217570	3.606647	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.913043
suprapubic_skin_male_adult_54_years	chr20	2325858	2325859	2325858	+	RAMPAGE_only	5	5	8	0.559577	2.521641	chr20	2325789	2325878	SINE|MIR|MIR3	+	chr20	2296000	2341078	TGM3|ENST00000381458.5	+	2296000,2309656,2310177,2311010,2312897,2317067,2317349,2325848,2328119,2332001,2335115,2339853,2340433	2296070,2309830,2310417,2311129,2313026,2317245,2317485,2325952,2328365,2332310,2335273,2339987,2341078	0.875000
suprapubic_skin_male_adult_54_years	chr12	52118139	52118183	52118182	-	High_confidence	5	6	26	1.818626	4.418296	chr12	52116006	52118404	LTR|ERV1|HERVE-int	-	chr12	52116691	52117953	STRG.94699.1	-	52116691	52117953	0.615385
suprapubic_skin_male_adult_54_years	chr19	5680205	5680252	5680205	-	High_confidence	3	3	19	1.328996	3.947703	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.894737
suprapubic_skin_male_adult_54_years	chrY	8299685	8299686	8299685	+	High_confidence	43	43	44	3.077675	4.731514	chrY	8298435	8300101	LTR|ERV1|LTR12C	+	chrY	8299724	8300095	STRG.140880.1	+	8299724	8300095	0.863636
suprapubic_skin_male_adult_54_years	chr17	36510968	36510990	36510968	-	High_confidence	3	3	6	0.419683	2.584963	chr17	36510964	36511121	SINE|MIR|MIRc	-	chr17	36507422	36510853	MYO19|ENST00000615902.1	-	36507422,36507802,36508896,36510745	36507512,36507924,36509135,36510853	0.833333
suprapubic_skin_male_adult_54_years	chr11	65437264	65437585	65437584	+	RAMPAGE_only	32	33	476	33.294851	5.493463	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.995798
suprapubic_skin_male_adult_54_years	chr1	54243238	54243249	54243238	-	RAMPAGE_only	3	3	8	0.559577	2.521641	chr1	54243091	54243229	SINE|MIR|MIR3	-	chr1	54226516	54228834	SSBP3|ENST00000528930.5	-	54226516,54228254,54228448,54228747	54227160,54228356,54228477,54228834	0.625000
suprapubic_skin_male_adult_54_years	chr17	40828187	40828213	40828187	+	High_confidence	6	7	27	1.888573	4.004344	chr17	40827956	40828193	LINE|L2|L2b	+	chr17	40828081	40835085	STRG.117764.4	+	40828081,40833114,40834381	40828296,40833199,40835085	0.962963
suprapubic_skin_male_adult_54_years	chr19	12800944	12801025	12800944	-	High_confidence	4	4	38	2.657992	4.628108	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.947368
suprapubic_skin_male_adult_54_years	chr1	42535554	42535562	42535554	+	High_confidence	2	2	7	0.489630	2.521641	chr1	42535577	42535696	SINE|Alu|AluJb	+	chr1	42534888	42654664	CCDC30|NM_001080850.2	+	42534888,42536475,42539172,42545409,42556155,42566295,42577019,42581359,42589320,42610977,42637236,42642472,42644692,42646134,42653375,42653817	42534989,42536601,42539310,42545579,42556405,42566475,42577229,42581514,42589483,42611090,42637378,42642609,42644807,42646317,42653443,42654664	1.000000
suprapubic_skin_male_adult_54_years	chr17	50908693	50908695	50908694	+	High_confidence	9	11	15	1.049207	3.323231	chr17	50908617	50908807	SINE|MIR|MIRb	-	chr17	50908707	50910397	STRG.118827.1	+	50908707,50909155,50909571,50909843	50908956,50909397,50909737,50910397	0.666667
suprapubic_skin_male_adult_54_years	chr11	65440279	65440505	65440423	+	RAMPAGE_only	38	39	718	50.222065	6.498875	chr11	65440323	65440484	SINE|Alu|AluJo	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998607
suprapubic_skin_male_adult_54_years	chr17	4143196	4143215	4143199	+	High_confidence	79	82	209	14.618958	5.781536	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.990431
suprapubic_skin_male_adult_54_years	chr9	120533986	120534029	120534028	-	RAMPAGE_only	3	3	12	0.839366	3.095795	chr9	120533823	120534313	LINE|L2|L2c	+	chr9	120518599	120532555	CDK5RAP2|ENST00000482047.1	-	120518599,120524985,120527805,120528743,120529977,120532466	120518645,120525078,120527925,120528797,120530140,120532555	0.666667
suprapubic_skin_male_adult_54_years	chr2	113184963	113184969	113184968	+	High_confidence	6	6	10	0.699472	3.169925	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.900000
suprapubic_skin_male_adult_54_years	chr6	36369249	36369258	36369257	-	RAMPAGE_only	17	17	26	1.818626	3.943465	chr6	36369227	36369398	SINE|MIR|MIRb	-	chr6	36354090	36387566	ETV7|ENST00000339796.9	-	36354090,36366874,36368928,36371329,36373452,36375870,36385533,36387535	36354687,36366975,36369071,36371560,36373578,36376035,36385669,36387566	0.923077
suprapubic_skin_male_adult_54_years	chr19	53865343	53865346	53865343	+	High_confidence	8	8	13	0.909313	3.084963	chr19	53865313	53865624	SINE|Alu|AluSx	-	chr19	53865349	53874619	STRG.127382.2	+	53865349,53869753,53873527,53874120	53865728,53869838,53874063,53874619	0.923077
suprapubic_skin_male_adult_54_years	chr19	39355055	39355077	39355076	+	RAMPAGE_only	3	4	7	0.489630	2.521641	chr19	39354873	39355172	SINE|Alu|AluSz6	-	chr19	39354003	39370115	SAMD4B|ENST00000599712.1	+	39354003,39356688,39369654	39354066,39357089,39370115	1.000000
suprapubic_skin_male_adult_54_years	chr8	26366359	26366396	26366395	+	RAMPAGE_only	4	4	21	1.468890	3.427333	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	1.000000
suprapubic_skin_male_adult_54_years	chr3	124751128	124751163	124751134	-	High_confidence	14	14	45	3.147622	4.769329	chr3	124749415	124751370	Retroposon|SVA|SVA_D	-	chr3	124750378	124751156	STRG.31061.1	-	124750378	124751156	0.955556
suprapubic_skin_male_adult_54_years	chr17	8413615	8413638	8413615	+	High_confidence	8	8	33	2.308256	4.390320	chr17	8413630	8413872	SINE|MIR|MIRc	+	chr17	8413194	8446884	NDEL1|ENST00000580237.5	+	8413194,8444259,8444623,8445710,8446753	8413269,8444357,8444742,8445864,8446884	0.515152
suprapubic_skin_male_adult_54_years	chr10	110885091	110885092	110885091	+	High_confidence	6	6	6	0.419683	2.584963	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110885252	110898122	PDCD4|ENST00000462577.5	+	110885252,110887664,110890599,110894090,110894411,110895947,110898027	110885366,110887814,110890670,110894198,110894522,110896087,110898122	0.666667
suprapubic_skin_male_adult_54_years	chr4	86896656	86896663	86896662	-	RAMPAGE_only	9	15	26	1.818626	3.336039	chr4	86896647	86896934	LINE|L2|L2	+	chr4	86876204	86892422	C4orf36|NM_144645.3	-	86876204,86887757,86888120,86891455,86892182	86876443,86887893,86888275,86891593,86892422	0.846154
suprapubic_skin_male_adult_54_years	chr2	72143990	72144015	72144014	-	High_confidence	4	4	8	0.559577	2.521641	chr2	72143577	72143985	DNA|hAT-Tip100|MER115	-	chr2	72129366	72144415	STRG.16533.2	-	72129366,72133022,72134760,72135143,72135852,72143988	72132619,72133307,72134916,72135419,72135956,72144415	0.750000
suprapubic_skin_male_adult_54_years	chr3	98733157	98733158	98733157	+	High_confidence	7	7	11	0.769419	2.921928	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.818182
suprapubic_skin_male_adult_54_years	chr14	102246218	102246251	102246218	-	RAMPAGE_only	4	4	12	0.839366	3.459432	chr14	102246199	102246391	LTR|ERV1|HERVFH21-int	+	chr14	102228826	102305168	MOK|ENST00000521766.5	-	102228826,102229456,102231706,102232534,102250811,102251755,102251916,102283477,102304961	102229362,102229657,102231821,102233789,102250990,102251804,102251995,102283592,102305168	0.500000
suprapubic_skin_male_adult_54_years	chr8	32927963	32927968	32927967	+	RAMPAGE_only	5	5	11	0.769419	3.121928	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.727273
suprapubic_skin_male_adult_54_years	chr17	32479853	32479866	32479853	+	High_confidence	5	5	12	0.839366	2.855389	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.750000
suprapubic_skin_male_adult_54_years	chr10	65570512	65570522	65570521	+	High_confidence	37	55	121	8.463607	5.949262	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.611570
suprapubic_skin_male_adult_54_years	chr3	48924764	48924767	48924764	+	RAMPAGE_only	5	5	9	0.629524	3.000000	chr3	48924715	48924993	SINE|Alu|AluSc8	-	chr3	48918852	48961679	ARIH2|ENST00000420814.5	+	48918852,48922747,48924717,48927461,48961611	48918998,48922811,48924971,48927813,48961679	0.777778
suprapubic_skin_male_adult_54_years	chr1	34771049	34771053	34771052	-	RAMPAGE_only	6	6	10	0.699472	2.503258	chr1	34770412	34771265	LINE|L2|L2	+	chr1	34761266	34761991	STRG.2115.1	-	34761266	34761991	0.600000
suprapubic_skin_male_adult_54_years	chr5	133124314	133124339	133124314	-	High_confidence	2	3	13	0.909313	3.392747	chr5	133124115	133124701	LTR|ERVL|MLT2B3	-	chr5	133111377	133124488	STRG.47420.1	-	133111377,133124228	133111507,133124488	0.769231
suprapubic_skin_male_adult_54_years	chr19	55069754	55069815	55069773	-	High_confidence	19	21	58	4.056936	5.362207	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55063900	55069531	RDH13|ENST00000587373.1	-	55063900,55069321	55064412,55069531	0.586207
suprapubic_skin_male_adult_54_years	chr9	39810023	39810064	39810033	-	High_confidence	10	10	31	2.168362	4.324849	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.612903
suprapubic_skin_male_adult_54_years	chr2	215294158	215294239	215294224	+	RAMPAGE_only	6	6	34	2.378204	4.116729	chr2	215293929	215294432	LTR|ERVL-MaLR|MLT1F1	-	chr2	215311816	215349763	ATIC|ENST00000236959.13	+	215311816,215312497,215318156,215319664,215325240,215325986,215326821,215332381,215333349,215334918,215336034,215338778,215344778,215346758,215349093,215349535	215312161,215312624,215318233,215319731,215325329,215326138,215326978,215332507,215333457,215335004,215336124,215338907,215344871,215346941,215349249,215349763	0.676471
suprapubic_skin_male_adult_54_years	chr3	52482656	52482672	52482656	+	RAMPAGE_only	2	3	11	0.769419	2.921928	chr3	52482568	52482694	DNA|TcMar-Tc2|Kanga1c	+	chr3	52455616	52493071	STRG.27939.2	+	52455616,52457842,52458661,52470858,52471813,52472302,52473733,52476446,52477573,52478096,52478372,52479748,52480183,52481183,52485777,52487195,52489335,52490074,52490704,52491351,52491871	52455734,52457926,52458844,52470907,52471977,52472398,52473829,52476599,52477642,52478282,52478577,52479862,52480263,52484637,52485827,52488605,52489678,52490231,52490833,52491513,52493071	0.909091
suprapubic_skin_male_adult_54_years	chr9	20658577	20658608	20658589	+	High_confidence	3	3	11	0.769419	3.121928	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.727273
suprapubic_skin_male_adult_54_years	chr22	32461600	32461649	32461648	-	RAMPAGE_only	4	4	19	1.328996	3.321104	chr22	32461578	32461771	DNA|hAT|MamRep38	+	chr22	32453333	32464449	BPIFC|ENST00000397450.2	-	32453333,32457262,32461573,32464373	32453503,32457386,32461661,32464449	1.000000
suprapubic_skin_male_adult_54_years	chr8	53523823	53523863	53523862	-	High_confidence	6	6	15	1.049207	3.773557	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53494007	53523907	STRG.68291.1	-	53494007,53516711,53523328	53494038,53516954,53523907	0.933333
suprapubic_skin_male_adult_54_years	chr11	58578102	58578133	58578102	-	High_confidence	17	20	46	3.217570	4.607977	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.826087
suprapubic_skin_male_adult_54_years	chr12	108563922	108563923	108563922	+	RAMPAGE_only	11	11	11	0.769419	3.095795	chr12	108563913	108564050	DNA|TcMar-Mariner|MARNA	-	chr12	108562616	108567444	ISCU|ENST00000535405.1	+	108562616,108564059,108565320,108567189	108562736,108564392,108565431,108567444	1.000000
suprapubic_skin_male_adult_54_years	chr14	91462126	91462224	91462223	-	High_confidence	10	11	50	3.497358	4.660631	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.860000
suprapubic_skin_male_adult_54_years	chr14	105016032	105016045	105016044	-	RAMPAGE_only	11	19	30	2.098415	4.182006	chr14	105015959	105016174	LTR|ERV1|MER89	+	chr14	105009935	105021060	CDCA4|ENST00000392590.3	-	105009935,105011159,105020998	105010633,105011935,105021060	0.666667
suprapubic_skin_male_adult_54_years	chr12	10363964	10363965	10363964	+	High_confidence	11	11	15	1.049207	3.456565	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.800000
suprapubic_skin_male_adult_54_years	chr9	121313949	121314021	121314020	+	RAMPAGE_only	20	21	142	9.932497	5.668105	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.992958
suprapubic_skin_male_adult_54_years	chr6	35487851	35487878	35487877	-	RAMPAGE_only	3	3	9	0.629524	2.750000	chr6	35487750	35487857	SINE|MIR|MIRc	-	chr6	35473596	35497076	TEAD3|ENST00000338863.11	-	35473596,35475335,35475565,35475918,35476301,35477310,35478274,35478433,35479304,35480311,35484559,35486460,35496897	35475157,35475488,35475706,35476092,35476435,35477372,35478324,35478571,35479316,35480374,35484624,35486711,35497076	0.888889
suprapubic_skin_male_adult_54_years	chr8	143179642	143179649	143179642	-	RAMPAGE_only	8	8	14	0.979260	3.378783	chr8	143179484	143180015	LTR|ERV1|MER51E	-	chr8	143176395	143176606	STRG.71984.1	-	143176395	143176606	0.785714
suprapubic_skin_male_adult_54_years	chr5	140485203	140485241	140485227	+	RAMPAGE_only	3	3	10	0.699472	2.725481	chr5	140485274	140485392	SINE|Alu|AluJo	+	chr5	140401907	140549569	ANKHD1-EIF4EBP3|ENST00000532219.5	+	140401907,140436103,140438460,140440118,140440994,140445741,140449210,140458624,140459163,140464666,140482579,140485120,140485588,140486957,140496519,140504820,140505121,140505723,140506834,140507784,140509636,140510018,140512827,140513362,140524065,140525995,140526927,140527872,140528183,140535361,140537388,140538085,140538918,140542171,140548905,140549233	140402273,140436257,140438617,140440266,140441142,140445975,140449305,140458862,140459355,140464776,140482667,140485248,140485732,140487060,140497278,140504966,140505233,140505869,140506977,140507998,140509812,140510181,140512923,140513479,140524240,140526443,140527074,140528022,140529796,140535538,140537589,140538261,140539083,140542281,140549076,140549569	0.800000
suprapubic_skin_male_adult_54_years	chr4	128428038	128428064	128428063	+	High_confidence	2	2	9	0.629524	2.750000	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428069	128519394	AC108062.1|ENST00000511497.5	+	128428069,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519394	0.666667
suprapubic_skin_male_adult_54_years	chr1	93324861	93324914	93324884	-	RAMPAGE_only	11	12	79	5.525826	5.440860	chr1	93324761	93324840	LINE|CR1|L3b	-	chr1	93264644	93333398	CCDC18-AS1|ENST00000446528.6	-	93264644,93305387,93324634,93325768,93333342	93264772,93305470,93324729,93325895,93333398	0.531646
suprapubic_skin_male_adult_54_years	chr6	137045294	137045308	137045307	-	High_confidence	20	22	30	2.098415	4.351823	chr6	137045242	137045773	DNA|TcMar-Tigger|Tigger3b	-	chr6	136999970	137045180	IL20RA|NM_014432.3	-	136999970,137004620,137008598,137009316,137011273,137016967,137044640	137002355,137004760,137008743,137009492,137011452,137017103,137045180	0.933333
suprapubic_skin_male_adult_54_years	chr12	3104102	3104152	3104105	+	RAMPAGE_only	4	4	16	1.119155	3.500000	chr12	3103785	3104309	LINE|L2|L2a	-	chr12	3077376	3286558	TSPAN9|ENST00000011898.9	+	3077376,3083652,3201176,3278420,3278991,3280381,3281197,3281733,3283044	3077453,3083719,3201256,3278612,3279066,3280483,3281329,3281817,3286558	0.562500
suprapubic_skin_male_adult_54_years	chr19	15053382	15053400	15053382	+	RAMPAGE_only	2	3	8	0.559577	3.000000	chr19	15053105	15053407	SINE|Alu|AluJo	-	chr19	15049479	15058293	CASP14|NM_012114.2	+	15049479,15052205,15053481,15053732,15055157,15055429,15055984	15049645,15052278,15053631,15053958,15055274,15055533,15058293	0.625000
suprapubic_skin_male_adult_54_years	chr19	35497986	35498205	35498177	-	High_confidence	104	105	685	47.913808	7.164850	chr19	35498132	35498355	SINE|Alu|AluJb	-	chr19	35497219	35497933	DMKN|ENST00000472365.6	-	35497219,35497646	35497538,35497933	0.605839
suprapubic_skin_male_adult_54_years	chr15	30624357	30624374	30624362	+	High_confidence	6	6	19	1.328996	2.945039	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	1.000000
suprapubic_skin_male_adult_54_years	chr4	157823826	157823848	157823826	-	High_confidence	6	6	15	1.049207	3.456565	chr4	157823502	157824101	LINE|L1|L1PBa	+	chr4	157803437	157823832	STRG.41228.1	-	157803437,157823801	157803701,157823832	0.800000
suprapubic_skin_male_adult_54_years	chr1	34754768	34754779	34754777	+	High_confidence	2	5	12	0.839366	3.095795	chr1	34754671	34754841	SINE|MIR|MIR	-	chr1	34755046	34758512	GJB5|NM_005268.3	+	34755046,34757306	34755195,34758512	0.666667
suprapubic_skin_male_adult_54_years	chr3	69237164	69237186	69237182	-	RAMPAGE_only	9	9	36	2.518098	4.653496	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69170806	69353697	STRG.29108.2	-	69170806,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69196254,69196899,69198697,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69353543	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195364,69196396,69197038,69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69353697	0.694444
suprapubic_skin_male_adult_54_years	chr1	145874299	145874405	145874404	-	RAMPAGE_only	14	14	85	5.945509	5.174452	chr1	145874398	145874567	LINE|L2|L2a	-	chr1	145866559	145885845	ANKRD35|ENST00000355594.8	-	145866559,145867286,145867990,145868310,145871981,145874154,145874821,145876139,145876568,145876815,145877967,145878390,145879257,145885719	145866765,145867392,145868056,145868400,145873985,145874192,145875006,145876246,145876639,145876873,145878032,145878479,145879388,145885845	0.823529
suprapubic_skin_male_adult_54_years	chr16	67183531	67183557	67183531	-	High_confidence	2	2	9	0.629524	3.000000	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.666667
suprapubic_skin_male_adult_54_years	chr15	57451552	57451576	57451552	+	RAMPAGE_only	3	3	10	0.699472	2.503258	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.900000
suprapubic_skin_male_adult_54_years	chr6	125217600	125217619	125217600	+	RAMPAGE_only	3	3	7	0.489630	2.521641	chr6	125217159	125217688	DNA|hAT-Charlie|MER1A	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.857143
suprapubic_skin_male_adult_54_years	chr2	159382558	159382567	159382566	-	RAMPAGE_only	6	6	11	0.769419	3.121928	chr2	159382314	159382523	SINE|MIR|MIRb	-	chr2	159318978	159616569	BAZ2B|ENST00000392782.5	-	159318978,159324810,159325652,159332539,159336941,159337566,159347485,159348677,159349006,159349707,159373044,159374690,159382558,159383605,159385154,159386352,159389344,159395768,159397344,159398828,159400598,159404848,159405021,159412334,159428310,159429199,159430862,159432756,159438302,159439008,159446781,159448241,159453612,159478574,159555822,159616241	159320418,159324954,159325918,159332686,159337077,159337772,159347646,159348833,159349280,159350357,159373189,159374753,159382802,159383680,159385369,159386607,159389485,159395834,159397389,159398894,159400664,159404910,159405114,159412545,159428419,159429260,159431156,159433363,159438695,159439212,159446975,159448403,159453801,159478721,159555865,159616569	0.909091
suprapubic_skin_male_adult_54_years	chr1	150729830	150729867	150729866	-	High_confidence	5	7	15	1.049207	3.664498	chr1	150727944	150729963	Retroposon|SVA|SVA_F	-	chr1	150702299	150729913	STRG.7931.1	-	150702299,150704117,150704276,150706552,150708255,150708893,150711544,150714084,150714614,150717137,150719472,150729148,150729573	150703393,150704194,150704343,150706809,150708407,150708961,150711571,150714121,150714678,150717282,150719541,150729225,150729913	0.800000
suprapubic_skin_male_adult_54_years	chr17	80697489	80697490	80697489	+	RAMPAGE_only	5	5	7	0.489630	2.521641	chr17	80696652	80697496	LTR|ERV1|LTR27B	-	chr17	80545467	80966368	RPTOR|ENST00000544334.6	+	80545467,80625690,80643727,80707840,80730559,80754009,80791449,80822200,80823078,80837921,80846472,80855463,80857789,80891719,80892728,80893706,80908810,80922723,80923489,80925369,80940495,80945666,80947226,80949442,80957623,80960077,80961393,80962460,80962927,80964261	80545791,80625793,80643810,80707999,80730706,80754185,80791509,80822301,80823223,80837997,80846574,80855547,80857900,80891837,80892869,80893865,80908929,80922827,80923673,80925480,80940601,80945781,80947351,80949547,80957730,80960205,80961480,80962577,80963057,80966368	1.000000
suprapubic_skin_male_adult_54_years	chr22	35896684	35896692	35896688	-	RAMPAGE_only	2	3	9	0.629524	3.000000	chr22	35896673	35896791	LINE|L2|L2	+	chr22	35743982	35938897	RBFOX2|ENST00000359369.8	-	35743982,35745922,35746472,35750425,35756104,35759887,35761201,35761414,35765422,35768256,35778024,35781599,35809779,35938846	35744249,35745995,35746561,35750457,35756144,35760020,35761294,35761468,35765483,35768349,35778078,35781743,35810004,35938897	0.555556
suprapubic_skin_male_adult_54_years	chr3	11225909	11225928	11225909	-	High_confidence	2	2	11	0.769419	2.721928	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.636364
suprapubic_skin_male_adult_54_years	chr10	102449836	102449845	102449836	+	High_confidence	15	15	47	3.287517	4.825186	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.765957
suprapubic_skin_male_adult_54_years	chr4	686181	686182	686181	-	High_confidence	6	7	9	0.629524	2.947703	chr4	686110	686165	LINE|L2|L2a	-	chr4	681857	686015	STRG.34783.10	-	681857,682780,683608,684482,684718	682376,683367,683761,684602,686015	0.888889
suprapubic_skin_male_adult_54_years	chr13	51080845	51080846	51080845	-	High_confidence	36	36	37	2.588045	4.926734	chr13	51078923	51080846	LINE|L1|L1PA6	-	chr13	51016107	51080862	GUCY1B2|ENST00000532104.1	-	51016107,51016915,51020397,51024099,51025333,51026701,51029593,51034002,51048219,51062820,51065950,51080706	51016327,51017064,51020718,51024316,51025437,51026813,51029693,51034159,51048314,51062894,51066157,51080862	0.594595
suprapubic_skin_male_adult_54_years	chr6	6702596	6702629	6702596	-	High_confidence	3	3	8	0.559577	2.750000	chr6	6702429	6702739	SINE|Alu|AluY	+	chr6	6699579	6702701	STRG.50839.1	-	6699579,6702327	6700947,6702701	0.875000
suprapubic_skin_male_adult_54_years	chr17	67920092	67920102	67920092	+	High_confidence	5	5	20	1.398943	4.142664	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	0.950000
suprapubic_skin_male_adult_54_years	chrX	7147287	7147288	7147287	+	High_confidence	7	8	10	0.699472	2.947703	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.800000
suprapubic_skin_male_adult_54_years	chr4	24966463	24966464	24966463	+	High_confidence	45	47	58	4.056936	4.781004	chr4	24966131	24971357	LTR|ERVL|HERVL18-int	+	chr4	24966471	24970581	STRG.36341.1	+	24966471,24967751,24969576,24970186	24966649,24967871,24969724,24970581	0.844828
suprapubic_skin_male_adult_54_years	chr2	178301785	178301786	178301785	+	RAMPAGE_only	4	4	7	0.489630	2.584963	chr2	178301628	178301912	LTR|ERVL-MaLR|MLT1I	+	chr2	178284926	178395785	OSBPL6|ENST00000409631.5	+	178284926,178306029,178324176,178328255,178331551,178332640,178332870,178336300,178338990,178339671,178349223,178361681,178373889,178382419,178383023,178384038,178385457,178387060,178389008,178391072,178392411,178394312,178395450	178285121,178306286,178324269,178328378,178331605,178332754,178333041,178336433,178339094,178339764,178349389,178361815,178374027,178382507,178383277,178384176,178385521,178387139,178389153,178391217,178392538,178394435,178395785	0.857143
suprapubic_skin_male_adult_54_years	chr5	160412454	160412478	160412454	-	RAMPAGE_only	2	2	7	0.489630	2.584963	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160406348	160408421	SLU7|ENST00000520841.1	-	160406348,160407475,160407745,160407970,160408328	160406629,160407615,160407813,160408068,160408421	0.714286
suprapubic_skin_male_adult_54_years	chr18	30991801	30992144	30991966	-	RAMPAGE_only	245	247	1197	83.726757	7.010356	chr18	30991883	30992175	SINE|Alu|AluY	+	chr18	30990007	31042741	DSC3|ENST00000360428.8	-	30990007,30996790,31001617,31004141,31006906,31008015,31008268,31018070,31018665,31022335,31024348,31025759,31029508,31030972,31032191,31042591	30994372,30997048,31001739,31004366,31007131,31008158,31008525,31018256,31018800,31022502,31024493,31025915,31029628,31031172,31032276,31042741	1.000000
suprapubic_skin_male_adult_54_years	chr1	155038105	155038130	155038129	+	RAMPAGE_only	3	3	6	0.419683	2.584963	chr1	155038092	155038557	LINE|L2|L2a	-	chr1	155039400	155042107	STRG.8327.2	+	155039400,155040484,155041396,155041713	155039531,155040624,155041613,155042107	1.000000
suprapubic_skin_male_adult_54_years	chr17	39494625	39494634	39494625	+	RAMPAGE_only	3	3	6	0.419683	2.584963	chr17	39494618	39494687	DNA|Merlin|Merlin1_HS	-	chr17	39462038	39535146	CDK12|ENST00000447079.4	+	39462038,39470878,39490556,39492750,39494523,39501249,39509704,39511528,39515730,39517439,39519955,39524673,39525863,39530603	39463117,39471763,39490733,39492890,39494694,39501439,39509761,39511630,39515808,39517556,39520087,39524885,39526316,39535146	1.000000
suprapubic_skin_male_adult_54_years	chr12	3764818	3764819	3764818	-	High_confidence	21	23	24	1.678732	4.316828	chr12	3764482	3765028	LTR|ERVL|MLT2A2	-	chr12	3606649	3764819	STRG.91883.2	-	3606649,3616953,3619270,3627435,3627624,3633603,3638123,3641731,3644594,3648541,3654211,3656310,3659563,3673445,3678914,3680237,3696771,3713236,3732941,3764564	3615439,3617030,3619372,3627550,3627706,3633736,3638457,3641838,3644640,3648613,3654399,3656406,3659654,3673592,3679098,3680349,3697035,3713317,3733210,3764819	0.833333
suprapubic_skin_male_adult_54_years	chr12	9739945	9739977	9739976	+	RAMPAGE_only	4	5	11	0.769419	3.277613	chr12	9738753	9740142	LTR|ERV1|LTR12C	-	chr12	9827480	9845007	KLRF1|ENST00000617889.4	+	9827480,9832315,9833302,9841811,9842320,9844417	9827629,9832414,9833452,9841951,9842433,9845007	0.545455
suprapubic_skin_male_adult_54_years	chr6	11728533	11728547	11728533	-	High_confidence	3	3	7	0.489630	2.584963	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.714286
suprapubic_skin_male_adult_54_years	chr4	170226587	170226588	170226587	+	High_confidence	17	17	23	1.608785	4.349649	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.913043
suprapubic_skin_male_adult_54_years	chr10	86555953	86555960	86555953	-	High_confidence	6	8	13	0.909313	2.807390	chr10	86555850	86556090	LTR|ERVL-MaLR|MLT1G3	-	chr10	86543133	86556065	STRG.82665.1	-	86543133,86550326,86553757,86555747	86543494,86550378,86553849,86556065	0.846154
suprapubic_skin_male_adult_54_years	chr3	54637852	54637881	54637852	-	RAMPAGE_only	3	4	7	0.489630	2.807355	chr3	54636818	54639750	LTR|ERV1|HERVH-int	-	chr3	54632121	54639857	ESRG|ENST00000583516.1	-	54632121,54633558,54634460,54637690	54632807,54633740,54634565,54639857	1.000000
suprapubic_skin_male_adult_54_years	chr11	65181205	65181233	65181205	+	High_confidence	8	8	19	1.328996	3.725481	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.947368
suprapubic_skin_male_adult_54_years	chr19	7642301	7642317	7642301	+	High_confidence	4	4	17	1.189102	3.454822	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.941176
suprapubic_skin_male_adult_54_years	chr10	119682528	119682553	119682552	-	High_confidence	22	22	45	3.147622	4.926037	chr10	119682381	119682650	LTR|ERVL|MLT2C1	+	chr10	119681718	119682521	STRG.84446.1	-	119681718,119682310	119681738,119682521	0.666667
suprapubic_skin_male_adult_54_years	chr15	42147837	42147846	42147845	-	High_confidence	5	6	10	0.699472	3.121928	chr15	42147814	42147909	SINE|MIR|MIR	-	chr15	42141208	42147733	STRG.107700.7	-	42141208,42142527,42143977,42144449,42145574,42145765,42146126,42147625	42142204,42142714,42144144,42144644,42145682,42145903,42147346,42147733	0.800000
suprapubic_skin_male_adult_54_years	chr2	240022172	240022182	240022172	-	RAMPAGE_only	5	5	9	0.629524	2.641604	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
suprapubic_skin_male_adult_54_years	chr20	36047139	36047259	36047219	-	RAMPAGE_only	9	9	73	5.106143	5.342231	chr20	36047010	36047299	SINE|Alu|AluSc	-	chr20	36045617	36050960	NORAD|NR_027451.1	-	36045617	36050960	1.000000
suprapubic_skin_male_adult_54_years	chr2	231072232	231072271	231072232	+	RAMPAGE_only	2	2	9	0.629524	2.947703	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.888889
suprapubic_skin_male_adult_54_years	chr17	38810332	38810333	38810332	-	RAMPAGE_only	6	6	9	0.629524	2.750000	chr17	38810300	38810417	LINE|L2|L2b	+	chr17	38800433	38811873	STRG.117616.3	-	38800433,38802699,38806296,38806764,38809701,38810275	38802206,38802861,38806395,38806976,38809765,38811873	0.666667
suprapubic_skin_male_adult_54_years	chr14	35019042	35019068	35019067	+	RAMPAGE_only	3	3	9	0.629524	3.000000	chr14	35019103	35019274	LINE|CR1|L3	+	chr14	35027729	35029135	SRP54|ENST00000556992.1	+	35027729,35029060	35028183,35029135	0.555556
suprapubic_skin_male_adult_54_years	chr1	155343321	155343324	155343321	-	RAMPAGE_only	15	15	25	1.748679	3.555533	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.920000
suprapubic_skin_male_adult_54_years	chr8	97719119	97719174	97719173	+	RAMPAGE_only	4	7	20	1.398943	3.346439	chr8	97719213	97719522	SINE|Alu|AluSx1	+	chr8	97691018	97724652	MTDH|ENST00000519293.1	+	97691018,97713661,97719048,97722878,97724599	97691188,97713769,97719189,97723035,97724652	0.700000
suprapubic_skin_male_adult_54_years	chr5	135730391	135730393	135730392	+	RAMPAGE_only	5	8	9	0.629524	2.500000	chr5	135730211	135730571	LTR|ERVL-MaLR|THE1B	+	chr5	135661752	135815694	STRG.47603.1	+	135661752,135812522,135814800	135662316,135812926,135815694	0.888889
suprapubic_skin_male_adult_54_years	chr1	39310282	39310392	39310304	+	RAMPAGE_only	9	9	104	7.274505	5.708531	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.990385
suprapubic_skin_male_adult_54_years	chr8	143281653	143281687	143281686	-	High_confidence	29	35	118	8.253766	5.364784	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.694915
suprapubic_skin_male_adult_54_years	chr11	123061200	123061322	123061254	-	High_confidence	32	35	168	11.751124	6.046276	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.952381
suprapubic_skin_male_adult_54_years	chr11	65440737	65441124	65440781	+	RAMPAGE_only	70	70	524	36.652315	6.212352	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
suprapubic_skin_male_adult_54_years	chr11	46375552	46375585	46375584	+	High_confidence	3	3	14	0.979260	3.392747	chr11	46375632	46375749	SINE|MIR|MIRb	+	chr11	46375023	46377350	DGKZ|ENST00000529698.1	+	46375023,46375431,46375850,46376065,46376327,46376523,46377072	46375045,46375631,46375951,46376145,46376397,46376564,46377350	0.928571
suprapubic_skin_male_adult_54_years	chr17	2975621	2975665	2975660	+	RAMPAGE_only	6	11	39	2.727939	4.787144	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2905281	3037738	STRG.115506.1	+	2905281,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3036411	2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3036326,3037738	0.871795
suprapubic_skin_male_adult_54_years	chr7	87040212	87040223	87040222	-	RAMPAGE_only	4	4	12	0.839366	3.459432	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.500000
suprapubic_skin_male_adult_54_years	chr15	43133126	43133127	43133126	+	High_confidence	5	6	8	0.559577	2.807355	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133143	43148788	TMEM62|ENST00000569535.5	+	43133143,43135511,43146492,43148754	43133402,43135649,43146634,43148788	0.625000
suprapubic_skin_male_adult_54_years	chr8	101975326	101975331	101975326	-	High_confidence	39	47	88	6.155351	5.773235	chr8	101975304	101975478	DNA|hAT-Charlie|MER5A	-	chr8	101692865	101975329	NCALD|ENST00000520690.5	-	101692865,101719251,101915808,101975259	101692896,101719648,101915858,101975329	0.534091
suprapubic_skin_male_adult_54_years	chr17	81845303	81845368	81845367	-	High_confidence	5	5	22	1.538838	4.061482	chr17	81845321	81845418	SINE|Alu|AluJo	+	chr17	81843491	81845456	P4HB|ENST00000473021.1	-	81843491,81845143	81844092,81845456	0.772727
suprapubic_skin_male_adult_54_years	chr5	119420424	119420465	119420440	+	RAMPAGE_only	16	24	55	3.847094	4.480278	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.854545
suprapubic_skin_male_adult_54_years	chr14	96090366	96090423	96090410	+	RAMPAGE_only	2	2	13	0.909313	3.251629	chr14	96090432	96090521	LINE|CR1|L3	+	chr14	96077326	96093887	STRG.105824.4	+	96077326,96086510	96077621,96093887	0.923077
suprapubic_skin_male_adult_54_years	chr19	10564933	10564984	10564933	-	RAMPAGE_only	5	5	18	1.259049	3.572431	chr19	10564755	10564893	SINE|MIR|MIRb	-	chr19	10553575	10565971	KRI1|ENST00000478863.5	-	10553575,10555086,10555284,10557551,10557971,10558163,10559358,10559612,10559809,10560311,10561002,10561168,10561666,10561790,10562728,10564928,10565716,10565905	10554281,10555185,10555349,10557895,10558060,10558239,10559529,10559708,10559936,10560448,10561080,10561265,10561716,10561845,10562837,10565034,10565790,10565971	1.000000
suprapubic_skin_male_adult_54_years	chr13	96994729	96994736	96994729	-	High_confidence	6	6	15	1.049207	2.842371	chr13	96994693	96994749	SINE|Alu|Alu	-	chr13	96987552	96994730	OXGR1|ENST00000541518.5	-	96987552,96989757,96992421,96994568	96987775,96989809,96992572,96994730	0.733333
suprapubic_skin_male_adult_54_years	chr15	90467511	90467583	90467511	+	RAMPAGE_only	2	2	18	1.259049	3.836592	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90388260	90500371	IQGAP1|ENST00000560738.1	+	90388260,90390773,90466046,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390824,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500371	0.944444
suprapubic_skin_male_adult_54_years	chr12	95172652	95172686	95172685	-	RAMPAGE_only	5	5	12	0.839366	2.594907	chr12	95172658	95172733	LINE|CR1|L3	-	chr12	95092827	95217379	FGD6|ENST00000549499.1	-	95092827,95094591,95105006,95106953,95107562,95108347,95108502,95113650,95134738,95137521,95141387,95152810,95152925,95172599,95208842,95217224	95092845,95094694,95105086,95107037,95107631,95108419,95108561,95113701,95134826,95137678,95141539,95152841,95152993,95172744,95211267,95217379	0.833333
suprapubic_skin_male_adult_54_years	chr2	168577047	168577098	168577097	+	RAMPAGE_only	7	7	37	2.588045	4.892147	chr2	168576807	168577855	LINE|L2|L2a	-	chr2	168456248	168775134	CERS6|NM_203463.2	+	168456248,168547595,168561191,168630984,168691033,168694958,168715000,168717871,168765591,168769509	168456618,168547701,168561322,168631042,168691084,168695051,168715129,168717978,168765748,168775134	0.513514
suprapubic_skin_male_adult_54_years	chr1	95092485	95092486	95092485	+	High_confidence	17	17	18	1.259049	3.616875	chr1	95091207	95092800	LTR|ERV1|LTR12C	+	chr1	95092513	95092844	STRG.5875.1	+	95092513	95092844	0.833333
suprapubic_skin_male_adult_54_years	chr17	76015708	76015709	76015708	-	RAMPAGE_only	12	13	16	1.119155	3.640224	chr17	76015708	76015861	SINE|MIR|MIRb	+	chr17	76007080	76027231	EVPL|ENST00000586740.1	-	76007080,76011575,76011771,76012005,76014425,76014915,76015226,76015449,76017738,76018094,76018445,76018913,76019527,76021467,76021673,76021866,76022188,76022412,76023291,76023499,76024020,76027100	76010543,76011668,76011882,76012089,76014576,76015109,76015365,76015628,76017911,76018258,76018600,76019060,76019653,76021563,76021781,76022028,76022227,76022538,76023418,76023654,76024120,76027231	0.937500
suprapubic_skin_male_adult_54_years	chr17	59318761	59318766	59318761	+	RAMPAGE_only	6	6	11	0.769419	3.095795	chr17	59318556	59319065	LTR|ERVL|MLT2A2	+	chr17	59331691	59401734	YPEL2|NM_001005404.3	+	59331691,59353214,59388326,59389359,59397100	59331824,59353526,59388370,59389468,59401734	0.818182
suprapubic_skin_male_adult_54_years	chr12	132782334	132782352	132782334	-	RAMPAGE_only	2	2	8	0.559577	2.521641	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132768914	132822311	GOLGA3|ENST00000450791.6	-	132768914,132774156,132775140,132776633,132776957,132777665,132780797,132782295,132784163,132786338,132786692,132789026,132791215,132795851,132796538,132798339,132801766,132804715,132807176,132807890,132813306,132816539,132821995	132773294,132774320,132775305,132776756,132777090,132777805,132780914,132782493,132784307,132786555,132786787,132789290,132791293,132796220,132796700,132798477,132801969,132805022,132807288,132808549,132813419,132816812,132822311	0.875000
suprapubic_skin_male_adult_54_years	chr16	68834397	68834445	68834430	+	RAMPAGE_only	10	10	27	1.888573	3.869300	chr16	68834273	68834516	SINE|Alu|AluJr	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.888889
suprapubic_skin_male_adult_54_years	chr16	4355592	4355593	4355592	-	High_confidence	30	30	30	2.098415	4.323231	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	1.000000
suprapubic_skin_male_adult_54_years	chrX	53585017	53585018	53585017	-	RAMPAGE_only	9	9	12	0.839366	3.027169	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53584210	53602891	STRG.137409.7	-	53584210,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602563	53584345,53585188,53586571,53586906,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602891	0.583333
suprapubic_skin_male_adult_54_years	chr3	54639856	54639857	54639856	-	High_confidence	5	5	8	0.559577	2.750000	chr3	54639752	54640204	LTR|ERV1|LTR7	-	chr3	54632121	54639857	ESRG|ENST00000583516.1	-	54632121,54633558,54634460,54637690	54632807,54633740,54634565,54639857	1.000000
suprapubic_skin_male_adult_54_years	chr6	77369117	77369167	77369144	-	High_confidence	21	21	120	8.393660	5.973048	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77350564	77369168	STRG.54026.1	-	77350564,77368885	77350734,77369168	0.533333
suprapubic_skin_male_adult_54_years	chr22	46626125	46626141	46626140	+	High_confidence	8	8	20	1.398943	3.932138	chr22	46625971	46626148	LINE|L2|L2b	-	chr22	46626760	46679790	GRAMD4|ENST00000361034.7	+	46626760,46637839,46658186,46661380,46663039,46663837,46664025,46665614,46666824,46668095,46668688,46668798,46672842,46673669,46674656,46675467,46676599,46677146	46626961,46637960,46658307,46661442,46663172,46663863,46664117,46665706,46666873,46668167,46668732,46668908,46672997,46673814,46674750,46675552,46676668,46679790	0.950000
suprapubic_skin_male_adult_54_years	chr18	36122236	36122254	36122248	-	High_confidence	7	9	40	2.797887	4.884184	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.975000
suprapubic_skin_male_adult_54_years	chr12	109591290	109591346	109591290	+	RAMPAGE_only	4	5	14	0.979260	3.378783	chr12	109591205	109591326	DNA|hAT-Ac|OldhAT1	+	chr12	109587860	109597262	MVK|ENST00000540353.1	+	109587860,109591240,109595027,109596425	109590861,109591357,109595181,109597262	1.000000
suprapubic_skin_male_adult_54_years	chr9	37603212	37603297	37603230	+	High_confidence	54	54	180	12.590490	6.660615	chr9	37603152	37603302	SINE|MIR|MIR3	+	chr9	37603032	37746852	STRG.74410.1	+	37603032,37623239,37692637,37707415,37708398,37711349,37719068,37724224,37729727,37730983,37732303,37733472,37733729,37735551,37737095,37740077,37744388	37603339,37623320,37692742,37707573,37708501,37711395,37719176,37724320,37729853,37731103,37732440,37733599,37733825,37735734,37737243,37740884,37746852	0.833333
suprapubic_skin_male_adult_54_years	chr17	56904518	56904519	56904518	-	High_confidence	7	9	11	0.769419	2.845351	chr17	56904513	56905129	LINE|L1|L1ME3C	+	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.636364
suprapubic_skin_male_adult_54_years	chr1	203799393	203799499	203799429	+	High_confidence	2	2	23	1.608785	3.880180	chr1	203799077	203799888	DNA|hAT-Ac|OldhAT1	+	chr1	203799334	203854118	ZBED6|ENST00000545588.5	+	203799334,203816925,203818569,203828298,203829450,203829779,203830122,203831660,203833790,203837965,203840305,203847183,203848330,203849710,203850514,203851056,203852140	203803016,203817124,203818689,203828422,203829654,203829896,203830203,203831771,203833853,203838064,203840374,203847687,203848407,203850026,203850681,203851124,203854118	0.913043
suprapubic_skin_male_adult_54_years	chr9	90997678	90997732	90997683	+	High_confidence	46	52	194	13.569750	4.676003	chr9	90997473	90998100	DNA|TcMar-Tigger|MER6A	+	chr9	90997689	91001736	STRG.75976.1	+	90997689,91000769,91001484	90997817,91000840,91001736	0.902062
suprapubic_skin_male_adult_54_years	chr13	48580933	48580938	48580937	-	High_confidence	21	23	42	2.937781	4.971928	chr13	48580763	48581196	LTR|ERVL-MaLR|THE1B	-	chr13	48577103	48580905	STRG.99728.1	-	48577103,48580840	48577859,48580905	0.809524
suprapubic_skin_male_adult_54_years	chr14	50756927	50757000	50756999	-	RAMPAGE_only	5	5	20	1.398943	3.721612	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.950000
suprapubic_skin_male_adult_54_years	chr7	1097259	1097260	1097259	-	RAMPAGE_only	21	22	25	1.748679	3.823935	chr7	1097189	1098106	LINE|L1|L1MC4	+	chr7	997493	1127388	C7orf50|ENST00000488073.1	-	997493,1000469,1009949,1109327,1127256	997804,1000551,1010143,1109461,1127388	0.800000
suprapubic_skin_male_adult_54_years	chr12	120495876	120495946	120495945	-	High_confidence	13	15	80	5.595773	5.626808	chr12	120495927	120495980	LTR|ERV1|LTR71B	+	chr12	120490337	120495946	NRAV|NR_038854.1	-	120490337,120495822	120492110,120495946	0.987500
suprapubic_skin_male_adult_54_years	chr4	36235423	36235434	36235423	-	RAMPAGE_only	2	2	8	0.559577	2.500000	chr4	36235061	36235588	LINE|L2|L2a	+	chr4	36160111	36243862	ARAP2|ENST00000508066.1	-	36160111,36161464,36164913,36166931,36177826,36187450,36193577,36210389,36212395,36213242,36214421,36228581,36243690	36160641,36161550,36165113,36167047,36178005,36187571,36193647,36210743,36212487,36213319,36214480,36229645,36243862	1.000000
suprapubic_skin_male_adult_54_years	chr5	32403108	32403146	32403145	-	RAMPAGE_only	4	4	23	1.608785	3.594466	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.913043
suprapubic_skin_male_adult_54_years	chr7	44619050	44619051	44619050	+	RAMPAGE_only	46	46	49	3.427411	5.039548	chr7	44618793	44619481	LTR|ERVL|MER21A	+	chr7	44606638	44709066	OGDH|ENST00000222673.5	+	44606638,44624316,44645326,44647656,44666735,44673786,44674410,44675177,44675969,44681719,44693824,44694423,44696024,44696428,44696913,44697369,44697603,44698191,44700140,44701542,44707224,44707581,44707878	44606653,44624565,44645518,44647759,44666851,44673941,44674557,44675268,44676149,44681848,44694004,44694576,44696127,44696557,44697064,44697497,44697782,44698263,44700269,44701615,44707388,44707736,44709066	0.612245
suprapubic_skin_male_adult_54_years	chr11	105842353	105842372	105842371	+	High_confidence	4	4	9	0.629524	2.750000	chr11	105842025	105842553	LINE|L2|L2a	-	chr11	105842782	105903983	GRIA4|ENST00000527687.1	+	105842782,105862023,105887518,105898268,105903813	105842912,105862208,105887572,105898427,105903983	0.555556
suprapubic_skin_male_adult_54_years	chr11	65442632	65442677	65442663	+	RAMPAGE_only	4	4	20	1.398943	3.426367	chr11	65442603	65442894	SINE|Alu|AluSx4	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.950000
suprapubic_skin_male_adult_54_years	chr10	94683469	94683484	94683483	+	High_confidence	3	3	7	0.489630	2.584963	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_001128925.1	+	94683493,94687769,94688124,94694916,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94720537,94724533,94733438,94736190	0.857143
suprapubic_skin_male_adult_54_years	chr10	101368219	101368284	101368219	+	RAMPAGE_only	8	9	32	2.238309	3.644248	chr10	101368004	101368435	LTR|ERVL-MaLR|MSTB1	+	chr10	101354533	101526083	BTRC|ENST00000370183.2	+	101354533,101430344,101461980,101479367,101521638,101526012	101354609,101430452,101462058,101479457,101521870,101526083	0.812500
suprapubic_skin_male_adult_54_years	chr6	32172648	32172652	32172648	-	High_confidence	28	35	64	4.476619	5.389365	chr6	32172466	32172653	SINE|MIR|MIR	-	chr6	32169965	32172651	STRG.51853.4	-	32169965,32170164,32170424,32170936,32171296,32172574	32170038,32170260,32170600,32171070,32171505,32172651	0.796875
suprapubic_skin_male_adult_54_years	chr11	43881075	43881088	43881087	+	High_confidence	10	10	31	2.168362	4.418157	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.774194
suprapubic_skin_male_adult_54_years	chr5	23951355	23951372	23951365	+	High_confidence	3	3	12	0.839366	3.084963	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951365	23951689	STRG.42802.1	+	23951365	23951689	0.583333
suprapubic_skin_male_adult_54_years	chr11	120123448	120123465	120123464	-	High_confidence	3	4	7	0.489630	2.584963	chr11	120123321	120123526	SINE|MIR|MIRc	-	chr11	120111297	120123271	TRIM29|ENST00000524816.7	-	120111297,120115337,120118222,120120572,120122953,120123189	120112476,120115414,120118321,120120665,120123055,120123271	0.571429
suprapubic_skin_male_adult_54_years	chr21	36005319	36005320	36005319	+	High_confidence	11	11	15	1.049207	3.506891	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.933333
suprapubic_skin_male_adult_54_years	chr1	174238848	174238907	174238875	+	RAMPAGE_only	10	10	46	3.217570	4.847053	chr1	174233266	174239293	LINE|L1|L1PA2	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.913043
suprapubic_skin_male_adult_54_years	chr7	64949228	64949234	64949233	+	RAMPAGE_only	5	8	17	1.189102	3.734522	chr7	64948006	64950297	LTR|ERVK|HERVK9-int	+	chr7	64947452	64950722	STRG.60853.2	+	64947452,64949115,64950203	64947955,64949409,64950722	1.000000
suprapubic_skin_male_adult_54_years	chr13	46711812	46711842	46711841	+	RAMPAGE_only	6	6	11	0.769419	3.321928	chr13	46711708	46711858	LINE|L1|X9_LINE	-	chr13	46553259	46742733	LRCH1|ENST00000389797.7	+	46553259,46650200,46669029,46681740,46685904,46687851,46689132,46692535,46694892,46699335,46701120,46705067,46705267,46711790,46712524,46715559,46723220,46728846,46733920,46741641	46553703,46650345,46669156,46681846,46686041,46687979,46689196,46692641,46695017,46699403,46701207,46705157,46705304,46711844,46712597,46715664,46723330,46728984,46733998,46742733	0.727273
suprapubic_skin_male_adult_54_years	chr14	96077498	96077501	96077500	+	High_confidence	9	21	31	2.168362	4.254196	chr14	96077298	96077697	LTR|ERVL-MaLR|MLT1B	+	chr14	96077326	96093887	STRG.105824.4	+	96077326,96086510	96077621,96093887	0.774194
suprapubic_skin_male_adult_54_years	chr9	20658321	20658349	20658338	+	High_confidence	13	13	55	3.847094	4.279480	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658339	20694732	STRG.73533.1	+	20658339,20694519	20658826,20694732	0.818182
suprapubic_skin_male_adult_54_years	chr4	118265840	118265846	118265840	-	RAMPAGE_only	10	11	27	1.888573	4.286790	chr4	118265367	118266730	LTR|ERV1|LTR12C	+	chr4	118204241	118259041	STRG.39733.1	-	118204241,118251568,118258975	118204282,118251687,118259041	0.555556
suprapubic_skin_male_adult_54_years	chr19	39198200	39198251	39198248	+	RAMPAGE_only	13	15	49	3.427411	4.954209	chr19	39198261	39198457	SINE|MIR|MIRb	+	chr19	39196963	39201882	NCCRP1|NM_001001414.1	+	39196963,39198052,39198201,39199169,39200345,39200615	39197319,39198115,39198253,39199265,39200484,39201882	1.000000
suprapubic_skin_male_adult_54_years	chr19	46927466	46927467	46927466	+	RAMPAGE_only	9	9	9	0.629524	2.503258	chr19	46927388	46927549	LINE|L2|L2b	-	chr19	46918675	47005077	ARHGAP35|ENST00000404338.7	+	46918675,46937263,46987988,46989543,46999303,47000330	46922356,46937408,46988066,46989675,46999409,47005077	1.000000
suprapubic_skin_male_adult_54_years	chr11	112150841	112150857	112150847	-	High_confidence	8	8	30	2.098415	3.914409	chr11	112150754	112150879	LINE|L2|L2c	+	chr11	112143256	112151073	IL18|ENST00000525547.5	-	112143256,112148602,112150071	112143817,112148736,112151073	1.000000
suprapubic_skin_male_adult_54_years	chr7	6044570	6044610	6044570	-	RAMPAGE_only	4	5	19	1.328996	3.392147	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6041152	6046437	EIF2AK1|ENST00000470168.1	-	6041152,6042932,6044561,6046070	6041219,6042993,6044661,6046437	0.684211
suprapubic_skin_male_adult_54_years	chr10	8453788	8453793	8453788	-	High_confidence	4	4	8	0.559577	2.500000	chr10	8453768	8453980	SINE|MIR|MIR	+	chr10	8435403	8454183	STRG.79310.1	-	8435403,8453647	8435782,8454183	0.500000
suprapubic_skin_male_adult_54_years	chr13	29647310	29647371	29647360	+	High_confidence	3	3	10	0.699472	3.121928	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647509	29655360	STRG.98727.1	+	29647509,29655069	29647724,29655360	0.900000
suprapubic_skin_male_adult_54_years	chr5	114433510	114433511	114433510	+	High_confidence	30	31	32	2.238309	4.148394	chr5	114432499	114433929	LTR|ERV1|LTR12C	+	chr5	114433529	114496500	KCNN2|NR_103458.1	+	114433529,114463048,114473053,114486697,114487049,114493402,114495894	114433929,114463190,114473164,114486803,114487177,114493472,114496500	0.906250
suprapubic_skin_male_adult_54_years	chr11	46873710	46873744	46873710	-	High_confidence	2	2	7	0.489630	2.521641	chr11	46873675	46873783	LINE|L2|L2c	+	chr11	46871524	46873754	LRP4|ENST00000527656.1	-	46871524,46873099,46873374	46871633,46873234,46873754	0.857143
suprapubic_skin_male_adult_54_years	chr22	50757120	50757134	50757120	+	High_confidence	2	2	11	0.769419	2.921928	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.636364
suprapubic_skin_male_adult_54_years	chr5	66949445	66949446	66949445	+	RAMPAGE_only	18	19	21	1.468890	3.787144	chr5	66949257	66949625	LTR|ERVL-MaLR|THE1C	+	chr5	66958869	67169595	MAST4|NM_001290226.1	+	66958869,67054403,67090161,67094156,67095596,67100434,67102535,67104365,67110097,67114086,67118681,67121016,67130209,67131812,67133513,67134522,67136562,67142114,67142420,67144668,67145143,67149388,67152636,67153457,67160455,67162606,67163146	66959294,67054492,67090231,67094165,67095675,67100592,67102611,67104575,67110199,67114219,67118749,67121102,67130418,67131951,67133646,67134688,67136664,67142237,67142533,67144796,67145379,67149589,67152866,67153580,67160592,67162788,67169595	0.904762
suprapubic_skin_male_adult_54_years	chr11	13419699	13419719	13419699	-	RAMPAGE_only	1	1	7	0.489630	2.584963	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.857143
suprapubic_skin_male_adult_54_years	chr20	1820654	1820689	1820688	-	RAMPAGE_only	8	8	17	1.189102	3.875000	chr20	1820600	1820822	SINE|MIR|MIRb	-	chr20	1804015	1817606	AL121760.1|ENST00000447206.1	-	1804015,1810553,1811114,1817568	1804092,1810674,1811224,1817606	0.529412
suprapubic_skin_male_adult_54_years	chr2	178301741	178301742	178301741	+	RAMPAGE_only	4	4	6	0.419683	2.584963	chr2	178301628	178301912	LTR|ERVL-MaLR|MLT1I	+	chr2	178284926	178395785	OSBPL6|ENST00000409631.5	+	178284926,178306029,178324176,178328255,178331551,178332640,178332870,178336300,178338990,178339671,178349223,178361681,178373889,178382419,178383023,178384038,178385457,178387060,178389008,178391072,178392411,178394312,178395450	178285121,178306286,178324269,178328378,178331605,178332754,178333041,178336433,178339094,178339764,178349389,178361815,178374027,178382507,178383277,178384176,178385521,178387139,178389153,178391217,178392538,178394435,178395785	1.000000
suprapubic_skin_male_adult_54_years	chr3	48979490	48979520	48979519	+	RAMPAGE_only	3	3	9	0.629524	2.750000	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.888889
suprapubic_skin_male_adult_54_years	chr2	33706869	33706870	33706869	+	High_confidence	13	13	14	0.979260	3.180833	chr2	33706674	33707027	LTR|ERVL-MaLR|THE1A	+	chr2	33706885	34297753	LINC01320|ENST00000366209.6	+	33706885,33855687,33926839,33944427,34286642,34297467	33706953,33855753,33926968,33944553,34286746,34297753	0.500000
suprapubic_skin_male_adult_54_years	chr11	17282810	17282814	17282813	+	RAMPAGE_only	5	5	10	0.699472	3.121928	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.900000
suprapubic_skin_male_adult_54_years	chr5	117454948	117454950	117454949	+	High_confidence	18	32	44	3.077675	4.851335	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.659091
suprapubic_skin_male_adult_54_years	chr19	55050895	55050928	55050927	-	RAMPAGE_only	3	3	7	0.489630	2.521641	chr19	55050881	55051058	SINE|MIR|MIR	+	chr19	55048656	55059174	RDH13|ENST00000589605.5	-	55048656,55050699,55056652,55059156	55048763,55051002,55056808,55059174	0.857143
suprapubic_skin_male_adult_54_years	chr7	2242922	2242923	2242922	+	High_confidence	29	29	29	2.028468	4.112821	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
suprapubic_skin_male_adult_54_years	chr15	67166512	67166533	67166530	+	High_confidence	21	21	50	3.497358	4.614177	chr15	67166449	67166543	LINE|L2|L2b	-	chr15	67166530	67181420	SMAD3|ENST00000558428.5	+	67166530,67170553,67181240	67166853,67170604,67181420	0.980000
suprapubic_skin_male_adult_54_years	chr17	40496620	40496644	40496620	-	RAMPAGE_only	8	8	23	1.608785	4.055958	chr17	40496611	40496803	SINE|MIR|MIR	+	chr17	40475827	40501597	TNS4|ENST00000254051.10	-	40475827,40478306,40478579,40479673,40480699,40482128,40482323,40484483,40484920,40487035,40488545,40495986,40501533	40477729,40478333,40478648,40479842,40480768,40482206,40482416,40484609,40485007,40487460,40488969,40496520,40501597	1.000000
suprapubic_skin_male_adult_54_years	chr5	133583682	133583702	133583701	-	High_confidence	2	3	8	0.559577	2.807355	chr5	133583288	133589299	LINE|L1|L1HS	+	chr5	133316596	133583641	FSTL4|ENST00000510685.1	-	133316596,133400737,133567185,133583264	133316652,133400986,133567219,133583641	0.500000
suprapubic_skin_male_adult_54_years	chr8	8177021	8177042	8177041	+	High_confidence	5	5	13	0.909313	3.188722	chr8	8172260	8180087	LTR|ERV1|HERVE-int	+	chr8	8177303	8180491	STRG.66763.1	+	8177303	8180491	0.923077
suprapubic_skin_male_adult_54_years	chr6	122444275	122444465	122444275	-	RAMPAGE_only	17	17	170	11.891018	5.100532	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	0.994118
suprapubic_skin_male_adult_54_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	7	7	7	0.489630	2.807355	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
suprapubic_skin_male_adult_54_years	chr1	212232522	212232523	212232522	-	RAMPAGE_only	43	53	59	4.126883	5.113421	chr1	212232282	212232732	LTR|ERVL|MLT2A2	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	0.830508
suprapubic_skin_male_adult_54_years	chr1	176162936	176162978	176162936	-	RAMPAGE_only	7	8	18	1.259049	3.734522	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.611111
suprapubic_skin_male_adult_54_years	chr13	98988460	98988461	98988460	-	RAMPAGE_only	19	19	24	1.678732	3.538311	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98793486	98978084	DOCK9|NM_001130048.1	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,98977783	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,98978084	0.791667
suprapubic_skin_male_adult_54_years	chr7	34132490	34132523	34132490	+	RAMPAGE_only	5	5	23	1.608785	3.617810	chr7	34132461	34132553	LINE|L2|L2b	+	chr7	34019854	34154486	BMPER|ENST00000647703.1	+	34019854,34046305,34051860,34055162,34062001,34078856,34085755,34143229,34153091	34019930,34046405,34051970,34055303,34062047,34079186,34086092,34143360,34154486	0.869565
suprapubic_skin_male_adult_54_years	chr12	53467722	53467750	53467722	+	High_confidence	5	5	12	0.839366	3.251629	chr12	53467721	53467786	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	1.000000
suprapubic_skin_male_adult_54_years	chr6	127330928	127330952	127330937	-	High_confidence	2	2	10	0.699472	2.947703	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.600000
suprapubic_skin_male_adult_54_years	chr1	85054976	85054979	85054976	+	RAMPAGE_only	19	23	36	2.518098	4.536286	chr1	85054781	85055152	LTR|ERVL-MaLR|THE1D	+	chr1	85062297	85133138	WDR63|NM_001288563.1	+	85062297,85071927,85073053,85081233,85082299,85084545,85085830,85093457,85094430,85095930,85097568,85098529,85104523,85108032,85110047,85117728,85121750,85124120,85126510,85128707,85129989,85132854	85062486,85072005,85073092,85081415,85082404,85084695,85086030,85093648,85094555,85096020,85097655,85098658,85104597,85108177,85110135,85117859,85121814,85124251,85126715,85128799,85130112,85133138	0.972222
suprapubic_skin_male_adult_54_years	chr12	82825027	82825059	82825027	+	RAMPAGE_only	6	6	19	1.328996	3.176110	chr12	82824806	82825110	SINE|Alu|AluSx	+	chr12	82758554	83134302	TMTC2|ENST00000549919.1	+	82758554,82760871,82857009,82895817,82930430,82965023,82965559,82966918,82985924,83030797,83050903,83061767,83132209	82760359,82760936,82857580,82896646,82930545,82965109,82965744,82966997,82986046,83030879,83051018,83061831,83134302	0.684211
suprapubic_skin_male_adult_54_years	chr10	91347770	91347771	91347770	+	RAMPAGE_only	4	4	6	0.419683	2.584963	chr10	91347814	91348020	LTR|ERVL-MaLR|MLT1K	+	chr10	91410284	91514826	HECTD2|ENST00000446394.5	+	91410284,91425280,91460426,91461253,91462094,91478200,91481093,91482966,91484333,91484506,91485179,91487681,91491199,91492351,91493419,91496213,91498107,91498871,91499043,91500501,91501190,91512263	91410576,91425410,91460565,91461356,91462184,91478265,91481139,91483076,91484345,91484655,91485303,91487778,91491307,91492484,91493508,91496372,91498182,91498959,91499150,91500617,91501334,91514826	0.500000
suprapubic_skin_male_adult_54_years	chr4	4269609	4269610	4269609	-	High_confidence	9	9	14	0.979260	2.931209	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.857143
suprapubic_skin_male_adult_54_years	chr8	100336308	100336318	100336308	+	High_confidence	20	20	47	3.287517	5.080873	chr8	100336300	100336359	DNA|hAT-Charlie|MER102b	-	chr8	100336337	100337016	STRG.70043.1	+	100336337	100337016	0.680851
suprapubic_skin_male_adult_54_years	chr2	29175343	29175380	29175352	+	High_confidence	5	5	17	1.189102	3.969816	chr2	29175307	29175605	LINE|CR1|L3	+	chr2	29175362	29181758	CLIP4|ENST00000481628.1	+	29175362,29181571	29175600,29181758	0.705882
suprapubic_skin_male_adult_54_years	chr2	85376881	85376882	85376881	+	High_confidence	6	6	7	0.489630	2.584963	chr2	85376136	85377036	LINE|L1|L1MDa	-	chr2	85376881	85390995	ELMOD3|ENST00000496957.1	+	85376881,85377343,85389750,85390137,85390759	85376916,85377474,85389827,85390265,85390995	0.714286
suprapubic_skin_male_adult_54_years	chr3	114624940	114625007	114625006	-	High_confidence	5	5	22	1.538838	3.844233	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.727273
suprapubic_skin_male_adult_54_years	chr11	65430479	65430905	65430790	+	RAMPAGE_only	29	29	473	33.085009	5.989111	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.997886
suprapubic_skin_male_adult_54_years	chr12	52303257	52303303	52303302	+	RAMPAGE_only	4	4	20	1.398943	3.932138	chr12	52303344	52303457	LINE|CR1|L3b	+	chr12	52301864	52309163	KRT86|ENST00000293525.5	+	52301864,52303099,52304110,52304931,52305239,52305662,52306059,52308232,52308403	52302285,52303308,52304171,52305027,52305404,52305788,52306280,52308264,52309163	0.900000
suprapubic_skin_male_adult_54_years	chr2	86482561	86482578	86482577	+	RAMPAGE_only	5	5	10	0.699472	3.169925	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.600000
suprapubic_skin_male_adult_54_years	chr19	35115804	35115845	35115822	+	High_confidence	10	10	40	2.797887	4.859641	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.775000
suprapubic_skin_male_adult_54_years	chr6	70394883	70394884	70394883	+	High_confidence	65	65	74	5.176090	5.544653	chr6	70394625	70395013	LTR|ERV1|MER48	+	chr6	70394886	70399417	AL365226.2|ENST00000418403.1	+	70394886,70395229,70399214	70395043,70395266,70399417	0.500000
suprapubic_skin_male_adult_54_years	chr19	11829891	11829892	11829891	+	High_confidence	4	4	6	0.419683	2.584963	chr19	11829852	11830101	SINE|Alu|AluSp	+	chr19	11829985	11831678	ZNF440|ENST00000414255.1	+	11829985,11830616,11831367	11830409,11830677,11831678	1.000000
suprapubic_skin_male_adult_54_years	chr12	64537418	64537485	64537484	-	High_confidence	5	5	42	2.937781	4.606138	chr12	64537295	64537465	SINE|MIR|MIRb	-	chr12	64536954	64537284	STRG.95385.1	-	64536954	64537284	0.880952
suprapubic_skin_male_adult_54_years	chr12	92061934	92061939	92061938	-	RAMPAGE_only	6	9	17	1.189102	3.452820	chr12	92061775	92062118	LTR|ERVL-MaLR|THE1B	-	chr12	91993084	92028257	LINC01619|ENST00000551306.1	-	91993084,92028169	91993529,92028257	0.705882
suprapubic_skin_male_adult_54_years	chr15	80059915	80059926	80059918	+	High_confidence	59	67	146	10.212286	5.708763	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.972603
suprapubic_skin_male_adult_54_years	chr15	42404759	42404806	42404759	+	High_confidence	136	142	577	40.359514	7.154830	chr15	42404762	42404835	DNA|TcMar-Tigger|Tigger14a	+	chr15	42404778	42412317	CAPN3|NM_173090.1	+	42404778,42405925,42409302,42409786,42409930,42410427,42410587,42410883,42411286,42411746	42404955,42405943,42409380,42409844,42409995,42410496,42410666,42411000,42411345,42412317	0.585789
suprapubic_skin_male_adult_54_years	chr5	172093420	172093445	172093420	-	RAMPAGE_only	8	8	13	0.909313	3.418296	chr5	172093338	172093392	DNA|hAT-Ac|OldhAT1	-	chr5	172042069	172188342	STK10|NM_005990.3	-	172042069,172052928,172054568,172055587,172057348,172061138,172064719,172082325,172082960,172090231,172093411,172096425,172105655,172106619,172107779,172117480,172127372,172156623,172187886	172045022,172053042,172054694,172055776,172057473,172061268,172064812,172082505,172083084,172090362,172093960,172096560,172105737,172106814,172107852,172117630,172127421,172156788,172188342	0.923077
suprapubic_skin_male_adult_54_years	chr1	6820197	6820198	6820197	+	RAMPAGE_only	4	4	7	0.489630	2.584963	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6853047	6888193	CAMTA1|ENST00000470648.5	+	6853047,6871756,6887653	6853189,6871840,6888193	0.714286
suprapubic_skin_male_adult_54_years	chr9	134372809	134372821	134372820	+	RAMPAGE_only	2	3	7	0.489630	2.584963	chr9	134372789	134372848	SINE|MIR|MIRc	+	chr9	134369535	134444300	STRG.78732.2	+	134369535,134382706,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466,134443278	134382575,134386390,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134442798,134444300	0.857143
suprapubic_skin_male_adult_54_years	chr6	3083267	3083298	3083267	+	RAMPAGE_only	2	2	11	0.769419	3.321928	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.909091
suprapubic_skin_male_adult_54_years	chr11	65429778	65430243	65430093	+	RAMPAGE_only	30	30	466	32.595379	6.643390	chr11	65430027	65430148	SINE|MIR|MIRb	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
suprapubic_skin_male_adult_54_years	chr14	64087849	64087850	64087849	+	RAMPAGE_only	11	11	11	0.769419	3.277613	chr14	64087899	64088180	SINE|Alu|AluSz	+	chr14	64075614	64226430	SYNE2|ENST00000394768.6	+	64075614,64078465,64080455,64081442,64087418,64087670,64089573,64090865,64093348,64097948,64098746,64101931,64107490,64113340,64119426,64120926,64122011,64122285,64125078,64126326,64126597,64128451,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64165284,64167232,64167494,64168876,64170227,64174943,64177357,64186423,64188549,64190070,64202800,64208757,64209427,64209941,64211960,64212810,64214193,64216247,64218397,64219207,64220436,64221575,64223188,64224460,64224995,64225318	64076100,64078606,64080638,64081580,64087487,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64122427,64125210,64126479,64126807,64128553,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64165410,64167387,64167639,64168971,64170462,64175138,64177483,64186579,64188708,64190237,64202963,64208945,64209578,64210124,64212098,64213005,64214470,64216387,64218512,64219410,64220637,64221704,64223380,64224547,64225045,64226430	1.000000
suprapubic_skin_male_adult_54_years	chr9	120395616	120395643	120395616	-	RAMPAGE_only	4	4	14	0.979260	2.896292	chr9	120395586	120396182	DNA|TcMar-Tigger|Tigger13a	+	chr9	120389195	120401019	CDK5RAP2|ENST00000474262.5	-	120389195,120389740,120394511,120400741	120389292,120389787,120394638,120401019	0.714286
suprapubic_skin_male_adult_54_years	chr16	10532227	10532240	10532239	-	RAMPAGE_only	5	6	13	0.909313	3.251629	chr16	10532094	10532204	DNA|hAT-Charlie|MER5A	-	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.846154
suprapubic_skin_male_adult_54_years	chr17	47067498	47067534	47067498	-	High_confidence	64	64	268	18.745840	5.781991	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.899254
suprapubic_skin_male_adult_54_years	chr12	79598065	79598120	79598119	-	High_confidence	3	3	8	0.559577	2.750000	chr12	79597796	79598259	LTR|ERVL-MaLR|MLT1F	-	chr12	79574978	79597982	PAWR|ENST00000548075.5	-	79574978,79592610,79594328,79596510,79597815	79575067,79592693,79594433,79596658,79597982	0.625000
suprapubic_skin_male_adult_54_years	chr5	151687240	151687252	151687244	-	High_confidence	3	3	11	0.769419	2.846439	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.909091
suprapubic_skin_male_adult_54_years	chr15	55270904	55270922	55270912	-	High_confidence	6	6	30	2.098415	3.702472	chr15	55270754	55271222	LINE|L2|L2	+	chr15	55202965	55270909	RAB27A|NM_183236.2	-	55202965,55223888,55228608,55230400,55234781,55270164,55270858	55205705,55224012,55228712,55230486,55234956,55270284,55270909	0.800000
suprapubic_skin_male_adult_54_years	chr16	58423177	58423222	58423177	+	High_confidence	7	7	26	1.818626	4.293661	chr16	58423064	58423375	LINE|L1|L1ME3G	-	chr16	58423183	58462852	STRG.113570.2	+	58423183,58435691,58461470,58462153	58423348,58435823,58461582,58462852	0.769231
suprapubic_skin_male_adult_54_years	chr3	128626815	128626821	128626820	-	RAMPAGE_only	9	10	17	1.189102	3.690117	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	1.000000
suprapubic_skin_male_adult_54_years	chr1	155478111	155478163	155478111	-	RAMPAGE_only	3	3	12	0.839366	3.277613	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.750000
suprapubic_skin_male_adult_54_years	chr20	50267474	50267481	50267474	+	High_confidence	2	2	8	0.559577	2.807355	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.750000
suprapubic_skin_male_adult_54_years	chr6	149896010	149896011	149896010	-	High_confidence	6	6	8	0.559577	2.750000	chr6	149895777	149896107	LTR|ERVL-MaLR|MLT1A0	-	chr6	149817936	149896011	AL355312.5|ENST00000647612.1	-	149817936,149826263,149836084,149837337,149842982,149853002,149864884,149865215,149868702,149868861,149888538,149889347,149889884,149890816,149895845	149820703,149826359,149836297,149837463,149843124,149853160,149864973,149865344,149868780,149869078,149888667,149889623,149890145,149891034,149896011	0.875000
suprapubic_skin_male_adult_54_years	chr11	65438659	65438832	65438659	+	RAMPAGE_only	16	16	135	9.442867	5.598275	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.992593
suprapubic_skin_male_adult_54_years	chr2	232785331	232785333	232785332	+	RAMPAGE_only	3	4	7	0.489630	2.584963	chr2	232785239	232785670	LTR|ERVL-MaLR|MLT1F2	-	chr2	232788105	232791348	GIGYF2|ENST00000410033.1	+	232788105,232790697,232791007,232791257	232788590,232790915,232791170,232791348	0.571429
suprapubic_skin_male_adult_54_years	chr2	72032806	72032849	72032806	-	RAMPAGE_only	11	12	56	3.917041	5.088343	chr2	72032754	72032857	SINE|MIR|MIRc	+	chr2	72010423	72034087	STRG.16498.1	-	72010423,72012955,72013862,72031855,72032404	72010748,72013001,72014043,72032000,72034087	0.750000
suprapubic_skin_male_adult_54_years	chr7	132590622	132590623	132590622	-	High_confidence	22	25	28	1.958521	4.384517	chr7	132590316	132590835	LTR|ERVL|MLT2A2	-	chr7	132180592	132590613	STRG.65073.1	-	132180592,132181380,132182096,132185298,132187470,132194061,132198484,132202645,132203322,132210942,132223526,132226160,132227450,132228345,132241065,132298090,132489291,132507505,132590402	132180732,132181620,132182190,132185463,132187607,132194179,132198636,132202836,132203419,132211143,132223641,132226260,132227604,132228469,132241166,132298222,132489474,132508779,132590613	0.928571
suprapubic_skin_male_adult_54_years	chr22	39021155	39021156	39021155	+	High_confidence	4	4	7	0.489630	2.584963	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.714286
suprapubic_skin_male_adult_54_years	chr20	24930628	24930666	24930628	+	High_confidence	12	12	77	5.385932	5.583068	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930636	24932983	STRG.129194.1	+	24930636,24931346	24930774,24932983	0.961039
suprapubic_skin_male_adult_54_years	chr8	141532115	141532123	141532115	+	High_confidence	3	3	8	0.559577	2.807355	chr8	141531945	141532451	LTR|ERVL|MLT2A2	+	chr8	141532095	141532580	STRG.71703.1	+	141532095	141532580	0.625000
suprapubic_skin_male_adult_54_years	chr1	174239180	174239181	174239180	+	RAMPAGE_only	6	6	6	0.419683	2.584963	chr1	174233266	174239293	LINE|L1|L1PA2	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.833333
suprapubic_skin_male_adult_54_years	chr1	109010931	109010983	109010931	-	RAMPAGE_only	3	3	20	1.398943	3.536887	chr1	109010578	109010881	SINE|Alu|AluY	-	chr1	108970213	109041986	WDR47|ENST00000400794.7	-	108970213,108974535,108981732,108982608,108983281,108986522,108991253,108995579,109002223,109004591,109010915,109013819,109017517,109023354,109041861	108971572,108974754,108981864,108982779,108983451,108986680,108991329,108995837,109002402,109004718,109011718,109013925,109017601,109023521,109041986	0.900000
suprapubic_skin_male_adult_54_years	chr6	43013471	43013498	43013478	-	High_confidence	6	6	20	1.398943	3.932138	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.950000
suprapubic_skin_male_adult_54_years	chr2	113185065	113185072	113185065	+	High_confidence	2	2	6	0.419683	2.584963	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	1.000000
suprapubic_skin_male_adult_54_years	chr1	75376210	75376230	75376210	-	High_confidence	5	5	15	1.049207	3.807355	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75210925	75375874	STRG.4900.1	-	75210925,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75375874	0.733333
suprapubic_skin_male_adult_54_years	chr9	92117507	92117508	92117507	-	RAMPAGE_only	15	15	16	1.119155	3.640224	chr9	92117187	92117818	LTR|ERV1|LTR9A1	+	chr9	92031133	92115474	SPTLC1|NM_006415.3	-	92031133,92034809,92038247,92045998,92047171,92047612,92049959,92055404,92059178,92067965,92080015,92080869,92108739,92112454,92115313	92032558,92034883,92038365,92046053,92047268,92047708,92050067,92055494,92059308,92068098,92080088,92080963,92108834,92112562,92115474	0.750000
suprapubic_skin_male_adult_54_years	chr1	178309956	178309961	178309956	+	RAMPAGE_only	3	3	7	0.489630	2.584963	chr1	178309765	178310059	DNA|TcMar-Tigger|Tigger9b	-	chr1	178299075	178452654	STRG.9458.3	+	178299075,178299991,178390099,178420510,178439421,178441548,178442674,178445517,178451570,178452415	178299830,178300118,178390206,178420620,178439575,178441647,178443229,178445662,178451715,178452654	0.857143
suprapubic_skin_male_adult_54_years	chr21	29077473	29077491	29077486	+	High_confidence	8	8	23	1.608785	4.011365	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.826087
suprapubic_skin_male_adult_54_years	chr5	126594180	126594207	126594206	-	High_confidence	4	5	9	0.629524	3.169925	chr5	126594110	126594228	LINE|L2|L2b	-	chr5	126544781	126594318	STRG.47081.2	-	126544781,126546323,126549928,126550195,126552020,126554286,126555930,126559239,126561082,126568258,126570781,126575419,126577078,126582850,126583931,126592663,126593350,126594107	126545019,126546399,126550002,126550293,126552137,126554393,126556015,126559334,126561124,126568356,126570859,126575464,126577211,126582974,126584012,126592729,126593404,126594318	0.888889
suprapubic_skin_male_adult_54_years	chr14	81170402	81170431	81170412	-	High_confidence	8	12	45	3.147622	4.819305	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.955556
suprapubic_skin_male_adult_54_years	chr2	37384500	37384504	37384503	-	High_confidence	9	9	18	1.259049	3.572431	chr2	37383330	37385519	LTR|ERV1|HERVH-int	-	chr2	37375120	37384435	STRG.14108.1	-	37375120,37376596,37378470,37384167	37376302,37376727,37378690,37384435	0.777778
suprapubic_skin_male_adult_54_years	chr16	67571162	67571205	67571162	+	High_confidence	2	2	12	0.839366	2.913977	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.916667
suprapubic_skin_male_adult_54_years	chr14	101731417	101731446	101731432	+	High_confidence	4	4	13	0.909313	3.418296	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101731416	101732288	STRG.106118.1	+	101731416,101731787,101732235	101731468,101731976,101732288	0.769231
suprapubic_skin_male_adult_54_years	chr1	86424297	86424332	86424331	+	High_confidence	4	5	13	0.909313	3.238901	chr1	86424338	86424378	LINE|RTE-BovB|MamRTE1	+	chr1	86424085	86456558	CLCA2|ENST00000370565.4	+	86424085,86425338,86428417,86430861,86432368,86434517,86438875,86440147,86441436,86443786,86447507,86450562,86453368,86455084	86424433,86425476,86428568,86430970,86432528,86434745,86439106,86440325,86441543,86444011,86447778,86450733,86453602,86456558	0.923077
suprapubic_skin_male_adult_54_years	chr12	113334806	113334807	113334806	-	High_confidence	6	8	9	0.629524	2.500000	chr12	113334758	113334823	LINE|L2|L2b	-	chr12	113307799	113334833	SLC8B1|ENST00000553238.5	-	113307799,113310233,113315334,113316525,113316941,113318963,113320580,113320849,113321055,113321195,113332722,113334442	113307912,113310355,113315476,113316656,113317001,113319071,113320686,113320907,113321108,113321348,113332960,113334833	0.888889
suprapubic_skin_male_adult_54_years	chr14	67478665	67478670	67478665	-	RAMPAGE_only	5	5	10	0.699472	3.169925	chr14	67478346	67478698	LINE|L2|L2c	+	chr14	67470265	67515304	TMEM229B|NM_182526.2	-	67470265,67486999,67515085	67473941,67487172,67515304	0.700000
suprapubic_skin_male_adult_54_years	chr2	26063890	26063891	26063890	+	RAMPAGE_only	4	5	7	0.489630	2.807355	chr2	26063803	26064055	SINE|Alu|AluSx	-	chr2	26034109	26137454	RAB10|ENST00000264710.4	+	26034109,26098661,26109767,26127143,26127849,26134937	26034735,26098722,26109906,26127233,26127951,26137454	0.857143
suprapubic_skin_male_adult_54_years	chr16	66996110	66996131	66996130	+	High_confidence	6	7	12	0.839366	3.277613	chr16	66996031	66996329	SINE|Alu|AluSc	-	chr16	66995680	67009735	CES4A|ENST00000538199.5	+	66995680,67000637,67000856,67001307,67003069,67003255,67003514,67004083,67005239,67006744,67008973	66995829,67000779,67000990,67001461,67003174,67003360,67003553,67004224,67005393,67006817,67009735	0.916667
suprapubic_skin_male_adult_54_years	chr12	119179243	119179257	119179243	+	High_confidence	7	7	13	0.909313	3.392747	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	1.000000
suprapubic_skin_male_adult_54_years	chr12	42846971	42846984	42846971	+	High_confidence	2	2	6	0.419683	2.584963	chr12	42846035	42847335	LINE|L1|L1MA9	-	chr12	42847001	42849564	STRG.93950.1	+	42847001,42849396	42847149,42849564	0.500000
suprapubic_skin_male_adult_54_years	chr5	75336514	75336527	75336517	+	High_confidence	11	12	33	2.308256	4.559546	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.696970
suprapubic_skin_male_adult_54_years	chr2	37378613	37378614	37378613	-	RAMPAGE_only	4	4	6	0.419683	2.584963	chr2	37378326	37378691	LTR|ERVL-MaLR|MLT1K	-	chr2	37375120	37384435	STRG.14108.1	-	37375120,37376596,37378470,37384167	37376302,37376727,37378690,37384435	0.500000
suprapubic_skin_male_adult_54_years	chr21	31531105	31531131	31531130	-	RAMPAGE_only	6	7	19	1.328996	3.826875	chr21	31531021	31531216	LINE|CR1|CR1-16_AMi	-	chr21	31118415	31558977	TIAM1|ENST00000286827.7	-	31118415,31124521,31127064,31130212,31130889,31135932,31141117,31141324,31146894,31152635,31153065,31154246,31164961,31182420,31187000,31195223,31202907,31210044,31213397,31217552,31223405,31225725,31245487,31251741,31266009,31276731,31339242,31463982,31558926	31120837,31124694,31127152,31130315,31130948,31136041,31141236,31141504,31147003,31152761,31153134,31154426,31165065,31182645,31187087,31195305,31203012,31210215,31213472,31217699,31223591,31225950,31245660,31252189,31266983,31276908,31339422,31464035,31558977	0.894737
suprapubic_skin_male_adult_54_years	chr17	41628695	41628696	41628695	-	High_confidence	5	5	8	0.559577	3.000000	chr17	41628668	41628794	LINE|L2|L2c	+	chr17	41627949	41628766	KRT42P|ENST00000587335.1	-	41627949,41628354	41628106,41628766	0.500000
suprapubic_skin_male_adult_54_years	chr17	6853880	6853939	6853886	+	High_confidence	4	5	28	1.958521	4.532665	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853860	6902192	ALOX12P2|ENST00000574727.5	+	6853860,6854213,6892002,6894317,6894883,6895095,6895342,6896315,6896553,6898528,6898799,6899390,6899592,6899867	6854060,6854435,6892075,6894513,6895006,6895199,6895503,6896459,6896763,6898698,6898929,6899490,6899760,6902192	0.714286
suprapubic_skin_male_adult_54_years	chr6	36970949	36970955	36970949	-	High_confidence	3	4	7	0.489630	2.584963	chr6	36970926	36971018	LINE|L2|L2b	+	chr6	36968759	36970916	MTCH1|ENST00000471737.1	-	36968759,36970038,36970405,36970646	36968974,36970114,36970473,36970916	0.714286
suprapubic_skin_male_adult_54_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	7	7	11	0.769419	3.121928	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.636364
suprapubic_skin_male_adult_54_years	chr9	33068829	33068929	33068838	-	RAMPAGE_only	4	4	27	1.888573	3.923856	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.925926
suprapubic_skin_male_adult_54_years	chr22	25032338	25032379	25032370	+	High_confidence	15	17	53	3.707200	5.298583	chr22	25032214	25032434	SINE|MIR|MIRc	-	chr22	25032119	25050824	STRG.133784.5	+	25032119,25032608,25038759,25049229	25032455,25032696,25041525,25050824	1.000000
suprapubic_skin_male_adult_54_years	chr9	19126434	19126437	19126434	-	RAMPAGE_only	2	2	7	0.489630	2.807355	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19115769	19127576	PLIN2|ENST00000276914.6	-	19115769,19118320,19119649,19120879,19123564,19126113,19126396,19127418	19116649,19118455,19119831,19121165,19123647,19126309,19126448,19127576	1.000000
suprapubic_skin_male_adult_54_years	chr2	185425256	185425302	185425301	+	High_confidence	4	4	24	1.678732	4.220176	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185425321	185483249	STRG.21663.1	+	185425321,185434096,185483033	185425507,185434191,185483249	0.541667
suprapubic_skin_male_adult_54_years	chr13	19244012	19244013	19244012	-	High_confidence	10	10	13	0.909313	3.418296	chr13	19243448	19245701	LINE|L1|L1PB1	+	chr13	19243662	19244038	STRG.98395.1	-	19243662	19244038	0.692308
suprapubic_skin_male_adult_54_years	chr12	643625	643636	643635	-	High_confidence	17	17	67	4.686460	5.001344	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.537313
suprapubic_skin_male_adult_54_years	chr19	282777	282786	282777	-	RAMPAGE_only	5	5	9	0.629524	2.750000	chr19	282643	282733	SINE|MIR|MIR1_Amn	-	chr19	281045	288537	PLPP2|ENST00000621795.1	-	281045,282133,282751	281537,282310,288537	0.888889
suprapubic_skin_male_adult_54_years	chr7	64949086	64949120	64949112	+	RAMPAGE_only	10	12	39	2.727939	4.521358	chr7	64948006	64950297	LTR|ERVK|HERVK9-int	+	chr7	64947452	64950722	STRG.60853.2	+	64947452,64949115,64950203	64947955,64949409,64950722	0.974359
suprapubic_skin_male_adult_54_years	chr21	36362198	36362227	36362226	+	RAMPAGE_only	8	11	27	1.888573	2.699927	chr21	36362270	36362558	SINE|Alu|AluSx	+	chr21	36320230	36376646	MORC3|ENST00000487909.5	+	36320230,36336873,36337731,36338773,36341398,36344578,36344911,36349310,36356619,36359954,36360183,36362182,36364092,36368987,36372373,36375142	36320303,36337006,36337946,36338921,36341546,36344707,36345031,36349408,36356724,36360077,36360258,36362228,36364259,36369876,36372531,36376646	1.000000
suprapubic_skin_male_adult_54_years	chr12	57532041	57532057	57532041	-	RAMPAGE_only	2	2	7	0.489630	2.584963	chr12	57531960	57532134	LINE|RTE-BovB|MamRTE1	+	chr12	57530310	57547141	DCTN2|ENST00000434715.7	-	57530310,57532014,57532212,57532571,57532732,57532983,57533237,57533952,57534291,57535055,57535483,57535748,57538518,57541363,57546027,57547027	57530775,57532106,57532315,57532643,57532810,57533022,57533303,57534097,57534452,57535154,57535545,57535845,57538524,57541372,57546096,57547141	0.857143
suprapubic_skin_male_adult_54_years	chr10	86974613	86974722	86974660	-	High_confidence	5	9	42	2.937781	4.948896	chr10	86974596	86974877	LINE|L1|L1M7	-	chr10	86965738	86974846	STRG.82737.2	-	86965738,86974443	86973934,86974846	0.785714
suprapubic_skin_male_adult_54_years	chr3	139344537	139344555	139344547	+	High_confidence	14	14	43	3.007728	4.621733	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.883721
suprapubic_skin_male_adult_54_years	chr11	47172282	47172314	47172312	-	High_confidence	5	8	19	1.328996	4.169925	chr11	47172030	47172274	SINE|MIR|MIRb	-	chr11	47166267	47171557	ARFGAP2|ENST00000527776.5	-	47166267,47166505,47166759,47167908,47168122,47171452	47166386,47166599,47166886,47168043,47168251,47171557	0.842105
suprapubic_skin_male_adult_54_years	chr2	241372946	241372963	241372949	+	RAMPAGE_only	25	25	48	3.357464	4.772055	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241356298	241463458	STRG.24738.4	+	241356298,241373083,241403827,241404798,241407536,241411032,241413306,241417961,241431678,241434157,241434961,241436480,241441303,241456746,241462522,241463334	241356388,241373290,241403932,241404841,241407615,241411130,241413421,241418109,241431774,241434321,241435030,241436538,241444645,241456922,241462612,241463458	0.937500
suprapubic_skin_male_adult_54_years	chr12	121950279	121950282	121950281	+	RAMPAGE_only	4	7	11	0.769419	2.921928	chr12	121949929	121950482	LINE|L1|L1MB5	+	chr12	121952694	121959739	WDR66|ENST00000535257.1	+	121952694,121957073,121958271,121958942	121954334,121957268,121958522,121959739	0.818182
suprapubic_skin_male_adult_54_years	chr8	102285725	102285755	102285754	-	RAMPAGE_only	4	4	8	0.559577	2.521641	chr8	102285712	102285783	DNA|hAT-Ac|OldhAT1	-	chr8	102252272	102412689	UBR5|NM_001282873.1	-	102252272,102257631,102258984,102261145,102261914,102264473,102265099,102266946,102268977,102270038,102271133,102272528,102275520,102275707,102276971,102278825,102279035,102280393,102281288,102285126,102285512,102286359,102287432,102288154,102289452,102293604,102293954,102294981,102295203,102295413,102295635,102296892,102297457,102298391,102298847,102299451,102299999,102304042,102305084,102311298,102311734,102312133,102312341,102313803,102314743,102323310,102326545,102327741,102329089,102329282,102342472,102345395,102346235,102346902,102360070,102360588,102361124,102361581,102412172	102254514,102257717,102259129,102261259,102262070,102264558,102265275,102267007,102269108,102270183,102271245,102272772,102275619,102275828,102277192,102278939,102279208,102280467,102281519,102285338,102285781,102286617,102287564,102288266,102289576,102293844,102294115,102295111,102295330,102295532,102295782,102296984,102297606,102298489,102298971,102299547,102300151,102304169,102305295,102311496,102311889,102312245,102312485,102313916,102314853,102323495,102326663,102327896,102329200,102329399,102342684,102345545,102346395,102347092,102360190,102360665,102361206,102361626,102412689	0.875000
suprapubic_skin_male_adult_54_years	chr5	70401416	70401547	70401467	+	High_confidence	7	11	88	6.155351	4.973150	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70401016	70450353	STRG.44417.3	+	70401016,70420248,70421279,70421736,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70401668,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70450353	0.954545
suprapubic_skin_male_adult_54_years	chr10	60657151	60657180	60657179	-	RAMPAGE_only	4	4	15	1.049207	2.985228	chr10	60656961	60657332	LTR|ERVL-MaLR|THE1B	-	chr10	60028400	60733490	ANK3|ENST00000373827.6	-	60028400,60042671,60055657,60059339,60059697,60063110,60064156,60067934,60080536,60082614,60083491,60084601,60085156,60086676,60088146,60105904,60108829,60114224,60134270,60138963,60166590,60166823,60172307,60172899,60173087,60181328,60186714,60196144,60196526,60198339,60200128,60203001,60205791,60208035,60213411,60234687,60261858,60263834,60270130,60278773,60279049,60279537,60615185,60733262	60029826,60042759,60056036,60059430,60060006,60063254,60064288,60068009,60080618,60082737,60083617,60084830,60085253,60086884,60088358,60106059,60109054,60114331,60134373,60139087,60166653,60166896,60172403,60172998,60173186,60181427,60186912,60196243,60196625,60198537,60200227,60203100,60205890,60208233,60213510,60234786,60261957,60264020,60270229,60278872,60279148,60279639,60615224,60733490	0.600000
suprapubic_skin_male_adult_54_years	chr12	12635888	12635914	12635913	+	RAMPAGE_only	6	7	11	0.769419	3.277613	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	1.000000
suprapubic_skin_male_adult_54_years	chr13	79525793	79525804	79525803	+	RAMPAGE_only	10	10	19	1.328996	3.576618	chr13	79523519	79525854	DNA|TcMar-Tigger|Tigger7	-	chr13	79481151	79532258	STRG.100535.3	+	79481151,79507573,79520809,79530411	79507257,79519169,79530367,79532258	1.000000
suprapubic_skin_male_adult_54_years	chr19	35115922	35115946	35115922	+	High_confidence	4	5	22	1.538838	3.697846	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115940	35123657	FXYD3|ENST00000603181.5	+	35115940,35116263,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35116040,35116359,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35123657	0.590909
suprapubic_skin_male_adult_54_years	chr18	9588168	9588197	9588168	-	RAMPAGE_only	2	3	8	0.559577	2.750000	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9577063	9595061	PPP4R1|ENST00000580583.5	-	9577063,9584514,9584720,9588088,9588710,9593767,9595017	9577191,9584580,9584828,9588235,9588853,9593874,9595061	0.500000
suprapubic_skin_male_adult_54_years	chr10	69495112	69495126	69495125	+	High_confidence	5	5	16	1.119155	3.327820	chr10	69494989	69495143	SINE|MIR|MIR3	+	chr10	69495134	69506995	TSPAN15|ENST00000459981.1	+	69495134,69495593,69498279,69504437,69506123,69506828	69495423,69495689,69498396,69504485,69506240,69506995	1.000000
suprapubic_skin_male_adult_54_years	chr1	1655395	1655462	1655421	-	RAMPAGE_only	9	9	48	3.357464	5.256717	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.666667
suprapubic_skin_male_adult_54_years	chr13	19045462	19045468	19045462	-	RAMPAGE_only	4	4	10	0.699472	3.169925	chr13	19045128	19045668	LTR|ERVL|MLT2A2	-	chr13	19026000	19032626	GTF2IP3|ENST00000433887.1	-	19026000,19026202,19026851,19032482	19026031,19026387,19026985,19032626	0.500000
suprapubic_skin_male_adult_54_years	chr17	19739515	19739597	19739515	-	RAMPAGE_only	3	3	20	1.398943	3.721612	chr17	19739343	19739476	SINE|MIR|MIRb	-	chr17	19737983	19745459	ALDH3A1|NM_001135168.1	-	19737983,19738322,19738995,19739507,19740335,19741092,19742003,19742544,19743231,19744967	19738235,19738453,19739095,19739674,19740477,19741210,19742212,19742630,19743463,19745459	0.900000
suprapubic_skin_male_adult_54_years	chr8	12488581	12488639	12488614	-	High_confidence	14	15	80	5.595773	5.839827	chr8	12485575	12493402	LTR|ERV1|HERVE-int	-	chr8	12485121	12489099	STRG.67025.1	-	12485121,12488484	12487908,12489099	0.587500
suprapubic_skin_male_adult_54_years	chr21	29077079	29077114	29077113	+	High_confidence	4	4	10	0.699472	2.921928	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29076959	29109901	STRG.132015.1	+	29076959,29085812,29091500,29091667,29092438,29109039	29077713,29085917,29091576,29091761,29092581,29109901	0.800000
suprapubic_skin_male_adult_54_years	chr1	34781469	34781490	34781469	+	High_confidence	2	2	11	0.769419	3.321928	chr1	34781455	34781569	SINE|MIR|MIRc	-	chr1	34781188	34786364	GJB3|ENST00000373366.2	+	34781188,34784737	34781778,34786364	0.909091
suprapubic_skin_male_adult_54_years	chr10	50480459	50480460	50480459	-	RAMPAGE_only	5	5	7	0.489630	2.807355	chr10	50480353	50483075	LINE|L1|L1PA10	+	chr10	50310552	50482587	STRG.81097.3	-	50310552,50327204,50343491,50433475,50460672,50466889,50480352	50311415,50327322,50344345,50433556,50460814,50466932,50482587	0.857143
suprapubic_skin_male_adult_54_years	chr17	75786596	75786609	75786606	+	RAMPAGE_only	3	3	10	0.699472	2.947703	chr17	75786575	75786885	SINE|Alu|AluSq2	+	chr17	75784854	75794198	UNK|ENST00000586527.1	+	75784854,75791759,75792312,75793442	75784984,75792019,75792478,75794198	0.500000
suprapubic_skin_male_adult_54_years	chr2	159228725	159228735	159228734	+	RAMPAGE_only	3	3	10	0.699472	2.947703	chr2	159228445	159228758	LINE|L2|L2	+	chr2	159224392	159232659	TANC1|ENST00000496406.1	+	159224392,159229577	159228896,159232659	0.800000
suprapubic_skin_male_adult_54_years	chr7	101217580	101217595	101217594	-	High_confidence	4	4	8	0.559577	2.750000	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101211634	101217595	STRG.62891.2	-	101211634,101211845,101212252,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101211716,101211950,101212374,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217595	1.000000
suprapubic_skin_male_adult_54_years	chr7	64897752	64897762	64897761	+	RAMPAGE_only	4	6	9	0.629524	2.641604	chr7	64897708	64898026	SINE|Alu|AluY	-	chr7	64894688	64926310	STRG.60816.7	+	64894688,64917029,64917580,64918196,64923385	64898054,64917118,64917707,64918292,64926310	0.888889
suprapubic_skin_male_adult_54_years	chr3	46674974	46675010	46675009	-	High_confidence	4	4	8	0.559577	2.521641	chr3	46674914	46675083	SINE|MIR|MIRc	-	chr3	46670783	46674698	ALS2CL|ENST00000498817.5	-	46670783,46671487,46672139,46673338,46674565	46671064,46672033,46672201,46673381,46674698	0.500000
suprapubic_skin_male_adult_54_years	chr12	19397915	19397918	19397917	+	RAMPAGE_only	4	7	8	0.559577	2.521641	chr12	19397954	19398081	SINE|Alu|AluSz	+	chr12	19404044	19493829	AEBP2|ENST00000538425.5	+	19404044,19462509,19473247,19493799	19404216,19462717,19473355,19493829	0.625000
suprapubic_skin_male_adult_54_years	chrX	48589981	48589994	48589981	+	High_confidence	2	2	7	0.489630	2.584963	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48590041	48598827	WDR13|ENST00000470124.1	+	48590041,48597957,48598716	48590287,48598037,48598827	0.714286
suprapubic_skin_male_adult_54_years	chr1	147517874	147517875	147517874	-	High_confidence	26	33	35	2.448151	4.312036	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147258884	147517875	LINC00624|ENST00000619867.4	-	147258884,147384667,147408589,147514337,147515520,147517442	147260976,147384863,147408689,147514448,147515676,147517875	0.885714
suprapubic_skin_male_adult_54_years	chr14	81166251	81166252	81166251	-	RAMPAGE_only	6	6	8	0.559577	2.807355	chr14	81166191	81166439	LTR|ERVL-MaLR|MLT1J2	+	chr14	81012098	81170224	AC007262.2|ENST00000646052.1	-	81012098,81053682,81087466,81093581,81094214,81099398,81165192,81170108	81014404,81053816,81087652,81093737,81094324,81099526,81165381,81170224	0.875000
suprapubic_skin_male_adult_54_years	chr6	139697472	139697473	139697472	-	High_confidence	29	29	29	2.028468	4.155756	chr6	139697058	139698478	LTR|ERV1|LTR12C	-	chr6	139697062	139697458	STRG.56753.1	-	139697062	139697458	0.862069
suprapubic_skin_male_adult_54_years	chr16	2759957	2759976	2759957	+	High_confidence	4	4	11	0.769419	2.646439	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.727273
suprapubic_skin_male_adult_54_years	chr14	100031253	100031274	100031273	+	RAMPAGE_only	2	2	7	0.489630	2.584963	chr14	100031190	100031290	DNA|hAT-Charlie|MER5B	+	chr14	100019575	100102347	EVL|ENST00000554460.5	+	100019575,100074502,100084686,100097480,100102303	100019687,100074615,100084855,100097658,100102347	0.571429
suprapubic_skin_male_adult_54_years	chr1	109264586	109264612	109264586	+	High_confidence	4	4	12	0.839366	3.095795	chr1	109264632	109264745	SINE|MIR|MIR3	+	chr1	109265268	109266439	CELSR2|ENST00000459940.1	+	109265268,109265734,109266104	109265311,109265918,109266439	0.666667
suprapubic_skin_male_adult_54_years	chr16	68834279	68834324	68834323	+	RAMPAGE_only	4	4	15	1.049207	3.521641	chr16	68834273	68834516	SINE|Alu|AluJr	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.733333
suprapubic_skin_male_adult_54_years	chr15	92678193	92678213	92678210	-	RAMPAGE_only	2	2	8	0.559577	2.521641	chr15	92678051	92678466	LTR|ERVL-MaLR|MSTC	-	chr15	92619182	92668043	FAM174B|ENST00000557480.5	-	92619182,92630213,92667897	92619459,92630345,92668043	0.750000
suprapubic_skin_male_adult_54_years	chr16	70590328	70590329	70590328	+	RAMPAGE_only	6	6	9	0.629524	2.750000	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.666667
suprapubic_skin_male_adult_54_years	chr5	77139278	77139279	77139278	+	High_confidence	4	4	6	0.419683	2.584963	chr5	77139300	77139468	LTR|ERVL-MaLR|MLT1H	+	chr5	77139248	77148523	ZBED3-AS1|ENST00000515356.2	+	77139248,77146116,77147651	77139317,77147162,77148523	0.833333
suprapubic_skin_male_adult_54_years	chr2	200889279	200889318	200889293	-	High_confidence	14	14	63	4.406671	5.350141	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.634921
suprapubic_skin_male_adult_54_years	chr4	75127193	75127252	75127224	-	High_confidence	9	10	56	3.917041	4.857374	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75082242	75127177	STRG.37925.1	-	75082242,75084588,75127065	75082357,75084703,75127177	0.821429
suprapubic_skin_male_adult_54_years	chr5	14653390	14653391	14653390	-	High_confidence	35	35	36	2.518098	4.376011	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.972222
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	5726324	5726325	5726324	-	High_confidence	30	31	34	1.803828	4.179229	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.676471
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	7147267	7147288	7147287	+	High_confidence	7	7	19	1.008021	3.576618	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.842105
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	64226142	64226218	64226158	-	High_confidence	33	34	225	11.937096	6.304530	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.977778
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	70257706	70257720	70257706	+	High_confidence	21	23	40	2.122150	4.649115	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.950000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	134613031	134613113	134613060	-	RAMPAGE_only	10	11	61	3.236279	3.869648	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606429	134614903	SAR1B|ENST00000508363.5	-	134606429,134608371,134609570,134612690	134607066,134608503,134609674,134614903	0.983607
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	98698874	98698889	98698888	+	RAMPAGE_only	5	5	15	0.795806	3.773557	chr1	98698937	98699054	LINE|L2|L2a	+	chr1	98661861	98760500	SNX7|ENST00000528824.1	+	98661861,98662696,98684884,98691074,98691534,98695517,98698705,98701816,98760053	98661911,98662816,98685067,98691185,98691699,98695716,98698905,98701903,98760500	0.533333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	55618850	55618904	55618850	-	High_confidence	19	19	53	2.811849	5.039785	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.962264
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	65430347	65430607	65430452	+	RAMPAGE_only	13	14	144	7.639742	5.641944	chr11	65430444	65430516	DNA|hAT-Charlie|Charlie4z	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	37987981	37987994	37987993	+	High_confidence	20	23	78	4.138193	5.287144	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.705128
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	155679929	155679930	155679929	-	High_confidence	17	17	17	0.901914	3.013071	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	48644913	48644931	48644913	-	RAMPAGE_only	14	14	27	1.432452	3.763342	chr19	48644772	48644894	SINE|Alu|AluSx	-	chr19	48637941	48646312	CA11|NR_136241.1	-	48637941,48638239,48639304,48639548,48639787,48640094,48644426,48645402,48645565	48638144,48639053,48639459,48639621,48639883,48640280,48644569,48645477,48646312	0.666667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	112332567	112332573	112332567	+	High_confidence	6	6	11	0.583591	2.594907	chr3	112332311	112332606	SINE|Alu|AluY	+	chr3	112332499	112347830	CD200|ENST00000606471.5	+	112332499,112344961,112347557	112332701,112345288,112347830	0.909091
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	18794063	18794086	18794085	+	High_confidence	13	13	40	2.122150	4.634184	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	122789091	122789114	122789091	+	High_confidence	6	6	11	0.583591	3.095795	chr6	122788977	122789115	LTR|ERV1|PrimLTR79	+	chr6	122789048	122809720	SMPDL3A|NM_006714.4	+	122789048,122795676,122796823,122801309,122803663,122804908,122806232,122809090	122789458,122795890,122796968,122801406,122803833,122805089,122806357,122809720	0.909091
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	175891546	175891573	175891572	-	RAMPAGE_only	5	5	22	1.167183	3.821928	chr4	175890999	175891614	LTR|ERV1|MER90a	+	chr4	175651889	175907173	GPM6A|ENST00000513667.5	-	175651889,175673679,175701574,175907042	175651987,175673836,175701767,175907173	0.545455
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	72350950	72350980	72350977	-	High_confidence	3	3	11	0.583591	2.921928	chr4	72350303	72351253	LINE|L1|L1MEc	-	chr4	72280991	72351192	MSTRG.17870.2	-	72280991,72288750,72290854,72295653,72298276,72303916,72305986,72309396,72311047,72312290,72313676,72315857,72318571,72319331,72319857,72320713,72323013,72339493,72350793	72283704,72288868,72291062,72295786,72298442,72304080,72306067,72309520,72311181,72312466,72313822,72315971,72318704,72319475,72319963,72320870,72323097,72339693,72351192	0.545455
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	8658876	8658886	8658876	-	High_confidence	2	2	9	0.477484	2.500000	chr11	8658830	8658957	DNA|DNA|MER126	-	chr11	8612036	8658836	TRIM66|ENST00000299550.10	-	8612036,8618749,8619382,8620049,8620445,8621031,8621644,8622815,8624358,8624708,8638653,8640226,8643008,8645740,8646446,8647969,8648415,8649739,8651799,8658736	8618003,8618968,8619535,8620124,8620572,8621321,8621819,8622876,8624454,8625228,8638815,8641152,8643126,8645887,8646561,8648086,8648548,8649887,8651903,8658836	0.555556
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	147173163	147173188	147173173	+	High_confidence	4	4	19	1.008021	3.836592	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.631579
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	30876009	30876044	30876016	+	High_confidence	5	5	42	2.228258	4.491460	chr16	30875869	30876035	SINE|MIR|MIRc	-	chr16	30875911	30895220	MIR762HG|ENST00000565573.1	+	30875911,30888713,30894547	30876118,30888958,30895220	0.928571
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	123060168	123060256	123060174	-	High_confidence	42	45	354	18.781031	5.257767	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.711864
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	27599304	27599336	27599322	+	High_confidence	3	4	11	0.583591	3.277613	chr12	27599105	27599506	LTR|ERVL|MLT2B4	+	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.818182
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	38789810	38789813	38789812	-	RAMPAGE_only	6	8	11	0.583591	3.121928	chr7	38789124	38789765	LINE|L2|L2b	-	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	0.909091
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	26505958	26505968	26505967	-	RAMPAGE_only	3	3	9	0.477484	2.750000	chr8	26505710	26505993	SINE|Alu|AluSx1	+	chr8	26504679	26513967	PNMA2|NM_007257.5	-	26504679,26509547,26513815	26509243,26509677,26513967	0.888889
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	222737198	222737290	222737289	+	High_confidence	43	47	165	8.753871	6.228608	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.575758
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	29368631	29368658	29368631	-	RAMPAGE_only	5	5	10	0.530538	2.721928	chr14	29367407	29369444	LINE|L1|L1ME3A	+	chr14	29274752	29381290	AL133166.1|ENST00000548306.1	-	29274752,29309179,29317955,29346444,29378292,29381180	29274781,29309317,29318002,29346525,29378456,29381290	0.600000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	17919001	17919037	17919036	-	RAMPAGE_only	3	3	11	0.583591	2.646439	chr22	17918944	17919059	LINE|L2|L2a	+	chr22	17834334	17906886	MICAL3|NM_001122731.2	-	17834334,17841821,17864898,17865923,17871836,17885877,17887169,17887322,17889033,17891484,17893807,17895283,17896245,17896723,17899447,17900841,17901877,17902630,17904631,17906548	17834549,17842017,17864986,17866012,17872023,17886051,17887232,17887435,17889230,17891632,17893904,17895410,17896361,17896981,17899548,17900997,17901979,17902747,17904839,17906886	0.545455
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	8697193	8697216	8697193	+	High_confidence	13	13	27	1.432452	4.053661	chr12	8697043	8697239	SINE|MIR|MIRc	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.703704
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	154928474	154928504	154928503	+	High_confidence	6	9	15	0.795806	2.692381	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.933333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	78620056	78620058	78620056	+	High_confidence	10	18	18	0.954968	3.302723	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.777778
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	46266488	46266495	46266488	-	High_confidence	7	7	17	0.901914	3.155639	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.705882
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	79393587	79393608	79393587	-	RAMPAGE_only	5	5	13	0.689699	3.085055	chr13	79393527	79394632	LTR|ERV1|MER50-int	+	chr13	79319953	79405788	RBM26|ENST00000267229.11	-	79319953,79322348,79334343,79337101,79341122,79342663,79344247,79344668,79354438,79355219,79358273,79359574,79365577,79366054,79366632,79368729,79370944,79371841,79377378,79378788,79405703	79320710,79322462,79334430,79337302,79341227,79342831,79344322,79344794,79354561,79355384,79358433,79359686,79365718,79366195,79366872,79368990,79371162,79371930,79377515,79378907,79405788	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	7566038	7566039	7566038	-	High_confidence	10	10	13	0.689699	2.688722	chr7	7565778	7566082	SINE|Alu|AluSc	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.923077
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	65434498	65434629	65434628	+	RAMPAGE_only	5	5	45	2.387419	4.641527	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	107754792	107754824	107754823	-	RAMPAGE_only	5	5	12	0.636645	3.084963	chr1	107754420	107755105	LINE|L2|L2a	+	chr1	107617583	107749508	VAV3|ENST00000529809.5	-	107617583,107642618,107704549,107704959,107748967,107749461	107617632,107642755,107704650,107705061,107749077,107749508	0.583333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	12927723	12927734	12927733	+	High_confidence	18	23	33	1.750774	4.040775	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.545455
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	102419930	102419949	102419937	-	High_confidence	6	7	18	0.954968	3.175123	chr10	102419931	102420131	SINE|MIR|MIRc	+	chr10	102402616	102419934	PSD|NM_001270965.1	-	102402616,102403841,102404582,102404897,102405182,102405345,102407222,102410857,102411057,102411706,102412146,102412380,102413768,102414862,102416016,102416384,102418700,102419873	102403430,102403985,102404727,102405055,102405253,102405536,102407266,102410947,102411116,102411819,102412227,102412575,102414197,102415229,102416119,102417121,102418759,102419934	0.944444
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	166850309	166850348	166850309	+	RAMPAGE_only	2	2	18	0.954968	3.350209	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	77127872	77127873	77127872	+	High_confidence	6	6	9	0.477484	2.947703	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.555556
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	122164577	122164597	122164595	+	High_confidence	10	15	32	1.697720	3.700506	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122164614	122174568	MORN5|ENST00000418632.1	+	122164614,122166767,122169644,122174495	122164647,122166915,122169756,122174568	0.562500
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	143018381	143018434	143018394	-	High_confidence	24	29	148	7.851957	5.731857	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	142981737	143018390	LY6E-DT|ENST00000517833.1	-	142981737,143018159	142982501,143018390	0.702703
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	130978732	130978733	130978732	-	High_confidence	8	8	12	0.636645	2.584963	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.666667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	50131135	50131140	50131139	-	High_confidence	5	5	9	0.477484	2.500000	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.888889
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	19344364	19344389	19344388	-	RAMPAGE_only	8	8	18	0.954968	3.038562	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	60205797	60205809	60205797	-	RAMPAGE_only	2	2	8	0.424430	2.521641	chr10	60205553	60205752	SINE|tRNA-RTE|MamSINE1	-	chr10	60026297	60389730	ANK3|ENST00000280772.6	-	60026297,60042671,60055657,60059339,60063110,60064156,60067934,60068636,60080536,60082149,60082614,60083491,60084601,60085156,60086676,60088146,60105904,60108829,60114224,60134270,60138963,60166590,60166823,60172307,60172899,60173087,60181328,60186714,60196144,60196526,60198339,60200128,60203001,60205791,60208035,60213411,60234687,60261858,60263834,60270130,60278773,60279049,60279537,60389424	60029826,60042759,60056036,60059430,60063254,60064288,60068009,60076448,60080618,60082176,60082737,60083617,60084830,60085253,60086884,60088358,60106059,60109054,60114331,60134373,60139087,60166653,60166896,60172403,60172998,60173186,60181427,60186912,60196243,60196625,60198537,60200227,60203100,60205890,60208233,60213510,60234786,60261957,60264020,60270229,60278872,60279148,60279639,60389730	0.875000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	19955918	19955945	19955944	+	High_confidence	6	6	16	0.848860	3.327820	chr8	19955939	19955979	DNA|TcMar-Tigger|Tigger19b	+	chr8	19956004	19967196	LPL|ENST00000650478.1	+	19956004,19960900,19962114,19965309	19956083,19961083,19962219,19967196	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	123061165	123061297	123061256	-	High_confidence	33	35	225	11.937096	6.146094	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.942222
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	31119083	31119131	31119088	-	High_confidence	11	17	87	4.615677	5.224103	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.988506
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	73513585	73513648	73513647	+	High_confidence	15	15	89	4.721785	5.411322	chr17	73512579	73514063	LINE|L1|L1ME4b	+	chr17	73513682	73518770	LOC101928251|NR_135635.1	+	73513682,73516600	73513790,73518770	0.943820
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	72351177	72351197	72351179	-	High_confidence	15	20	44	2.334365	4.387585	chr4	72350303	72351253	LINE|L1|L1MEc	-	chr4	72280991	72351192	MSTRG.17870.2	-	72280991,72288750,72290854,72295653,72298276,72303916,72305986,72309396,72311047,72312290,72313676,72315857,72318571,72319331,72319857,72320713,72323013,72339493,72350793	72283704,72288868,72291062,72295786,72298442,72304080,72306067,72309520,72311181,72312466,72313822,72315971,72318704,72319475,72319963,72320870,72323097,72339693,72351192	0.954545
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	43013392	43013393	43013392	-	High_confidence	18	18	18	0.954968	4.058814	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	41871819	41871833	41871832	-	RAMPAGE_only	7	7	12	0.636645	2.625815	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.666667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	124171528	124171529	124171528	-	High_confidence	17	17	17	0.901914	3.169249	chr8	124171344	124171724	LTR|ERVL-MaLR|THE1D	-	chr8	124046070	124171522	FER1L6-AS2|NR_103547.1	-	124046070,124047556,124058787,124060167,124171427	124046776,124047693,124058972,124060792,124171522	0.941176
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	8308637	8308666	8308637	+	RAMPAGE_only	10	14	30	1.591613	3.390759	chr19	8308607	8308853	LINE|L2|L2a	+	chr19	8321157	8322946	RPS28|ENST00000449223.3	+	8321157,8321655,8322271	8321569,8322091,8322946	0.766667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	65053822	65053854	65053822	-	RAMPAGE_only	2	3	11	0.583591	2.663533	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.909091
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	32927967	32927977	32927976	+	RAMPAGE_only	31	48	89	4.721785	5.180719	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.808989
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	167696431	167696450	167696449	-	High_confidence	3	3	6	0.318323	2.584963	chr6	167696404	167696912	LINE|L1|L1ME3G	+	chr6	167680691	167696290	LINC02487|ENST00000644320.1	-	167680691,167682332,167683107,167695334,167695915,167696203	167681937,167682447,167684245,167695377,167696087,167696290	0.500000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	202551743	202551760	202551743	+	RAMPAGE_only	4	4	9	0.477484	2.500000	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.666667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	44413924	44413938	44413924	+	RAMPAGE_only	2	2	8	0.424430	2.521641	chr15	44413807	44414135	SINE|Alu|AluSq2	-	chr15	44288759	44415757	CASC4|ENST00000345795.6	+	44288759,44322964,44328684,44331987,44337762,44338236,44379689,44380805,44413335	44289356,44323019,44328787,44332078,44337907,44338317,44379788,44380976,44415757	0.875000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	18445944	18445951	18445944	-	RAMPAGE_only	3	4	8	0.424430	2.750000	chr12	18445268	18446036	LINE|L1|L1ME4b	+	chr12	18081363	18320107	RERGL|ENST00000541632.1	-	18081363,18084516,18085619,18088899,18140791,18143183,18285304,18320055	18081473,18084665,18085693,18088956,18140873,18143293,18285401,18320107	0.625000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	212792435	212792449	212792435	-	High_confidence	3	3	10	0.530538	2.721928	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.700000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	156540571	156540575	156540571	-	RAMPAGE_only	36	39	56	2.971011	2.755302	chr3	156540323	156540630	SINE|Alu|AluY	+	chr3	156539552	156554125	SSR3|NM_001308205.1	-	156539552,156544307,156548904,156553654,156553992	156543269,156544439,156549003,156553781,156554125	0.946429
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	8776387	8776426	8776425	-	High_confidence	11	11	43	2.281312	3.679262	chr11	8776369	8776474	LINE|L2|L2b	-	chr11	8730980	8776679	ST5|ENST00000533016.1	-	8730980,8750620,8776191	8731209,8750725,8776679	0.813953
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	165655290	165655337	165655316	-	High_confidence	35	35	120	6.366451	5.445390	chr6	165655189	165655800	LINE|L2|L2a	+	chr6	165327288	165655336	PDE10A|ENST00000648917.1	-	165327288,165336122,165339277,165343390,165379193,165388297,165392645,165395180,165396316,165413500,165416188,165418634,165428657,165430286,165431421,165432973,165435236,165448927,165450241,165482314,165543439,165654812	165333127,165336211,165339358,165343502,165379366,165388453,165392796,165395264,165396459,165413687,165416281,165418777,165428709,165430345,165431472,165433129,165435377,165448977,165450362,165482343,165543568,165655336	0.941667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	165655203	165655210	165655203	-	High_confidence	3	3	8	0.424430	3.000000	chr6	165655189	165655800	LINE|L2|L2a	+	chr6	165327288	165655336	PDE10A|ENST00000648917.1	-	165327288,165336122,165339277,165343390,165379193,165388297,165392645,165395180,165396316,165413500,165416188,165418634,165428657,165430286,165431421,165432973,165435236,165448927,165450241,165482314,165543439,165654812	165333127,165336211,165339358,165343502,165379366,165388453,165392796,165395264,165396459,165413687,165416281,165418777,165428709,165430345,165431472,165433129,165435377,165448977,165450362,165482343,165543568,165655336	0.750000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	88667567	88667650	88667634	+	RAMPAGE_only	286	294	1779	94.382641	6.147437	chr10	88667660	88667752	DNA|hAT-Ac|OldhAT1	+	chr10	88664457	88678814	LIPF|ENST00000355843.2	+	88664457,88665478,88667286,88667568,88668656,88669836,88671828,88673587,88675585,88676208,88678444	88664491,88665559,88667402,88667686,88668756,88669946,88671965,88673734,88675657,88676280,88678814	0.988758
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	166850123	166850125	166850124	+	RAMPAGE_only	10	19	24	1.273290	3.621176	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.958333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	13554136	13554137	13554136	-	RAMPAGE_only	12	12	13	0.689699	3.022055	chr12	13554112	13554482	LINE|L2|L2c	-	chr12	13537336	13980363	GRIN2B|ENST00000609686.3	-	13537336,13567024,13569829,13571803,13608602,13611724,13615113,13615492,13616454,13675744,13753316,13865797,13979927	13564639,13567263,13570017,13571964,13608832,13611850,13615267,13615664,13616657,13675859,13753915,13866226,13980363	0.923077
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	104507264	104507289	104507288	+	RAMPAGE_only	7	7	21	1.114129	3.284184	chr2	104507130	104507346	SINE|MIR|MIR	-	chr2	104434377	104512757	LINC01102|ENST00000447380.1	+	104434377,104505865,104507231,104512042	104434523,104506303,104507406,104512757	0.952381
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	147937574	147937596	147937574	+	RAMPAGE_only	2	2	10	0.530538	2.725481	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147943244	147948534	FMR1|ENST00000463120.2	+	147943244,147944868,147945533,147948412	147943326,147945051,147945616,147948534	0.900000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	77663384	77663400	77663384	-	RAMPAGE_only	3	3	9	0.477484	2.725481	chrX	77663038	77663337	SINE|Alu|AluJb	-	chrX	77633352	77652276	ATRX|ENST00000623242.3	-	77633352,77633565,77634593,77635914,77651982	77633384,77633712,77634703,77636056,77652276	0.666667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	31587009	31587021	31587020	+	High_confidence	5	5	14	0.742753	3.378783	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.857143
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	43557747	43557764	43557758	-	High_confidence	17	18	34	1.803828	4.392583	chr5	43557737	43557841	DNA|hAT-Charlie|MER33	-	chr5	43536853	43557734	PAIP1|ENST00000511321.5	-	43536853,43538923,43543003,43547727,43555829,43557700	43536944,43539035,43543116,43547913,43555999,43557734	0.676471
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	60949443	60949459	60949443	-	RAMPAGE_only	11	12	25	1.326344	3.483074	chr1	60949259	60949438	SINE|MIR|MIRb	-	chr1	60940238	60970776	NFIA-AS2|ENST00000438559.5	-	60940238,60941179,60952510,60954321,60954484,60963565,60970547	60940631,60941252,60952684,60954370,60954602,60963804,60970776	0.760000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	65024309	65024329	65024309	-	High_confidence	3	3	10	0.530538	2.721928	chr4	65024156	65024597	LTR|ERVL-MaLR|MSTB1	-	chr4	64914280	65024485	LINC02232|ENST00000509932.2	-	64914280,64926591,64937606,64939272,64939955,64977488,65004402,65008781,65024236	64917643,64926661,64937839,64939365,64940036,64977629,65004501,65008912,65024485	0.500000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	20658296	20658347	20658296	+	High_confidence	10	10	61	3.236279	3.913397	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.803279
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	102706282	102706283	102706282	-	RAMPAGE_only	6	7	8	0.424430	2.521641	chr10	102706170	102706459	SINE|Alu|AluSc8	+	chr10	102673730	102714407	ARL3|ENST00000260746.5	-	102673730,102685815,102689892,102699372,102705345,102714272	102676941,102686001,102689943,102699489,102705489,102714407	0.750000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	74335184	74335408	74335184	-	RAMPAGE_only	6	6	69	3.660710	5.358170	chr11	74335126	74335419	SINE|Alu|AluSg4	-	chr11	74330417	74398408	MSTRG.4189.3	-	74330417,74333401,74338467,74342460,74342884,74343322,74345468,74346731,74347147,74351382,74368491,74370901,74371710,74374414,74398050	74333378,74336754,74338601,74342650,74343014,74343416,74345649,74346829,74347337,74351576,74368575,74370986,74371817,74374582,74398408	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	11587468	11587475	11587468	-	High_confidence	7	10	17	0.901914	3.202820	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.764706
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	98698113	98698145	98698113	+	RAMPAGE_only	8	9	33	1.750774	4.248495	chr1	98698112	98698412	LINE|L2|L2c	-	chr1	98661722	98760500	SNX7|ENST00000306121.7	+	98661722,98684884,98691074,98691534,98695517,98698705,98701816,98738236,98760053	98661911,98685067,98691185,98691699,98695716,98698905,98701903,98738389,98760500	0.818182
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	152412488	152412529	152412528	-	High_confidence	6	6	20	1.061075	3.684184	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.950000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	9333276	9333295	9333276	+	RAMPAGE_only	5	5	10	0.530538	2.725481	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9307799	9480816	PLCB4|NM_000933.3	+	9307799,9337125,9338007,9338893,9362895,9365460,9371213,9372302,9373046,9380053,9384200,9387462,9389878,9390530,9393587,9395522,9401489,9407916,9408632,9409056,9411036,9419806,9421296,9423747,9435559,9437001,9443980,9444177,9453346,9457413,9459634,9468570,9472789,9473278,9476716,9478920	9307898,9337206,9338067,9339037,9362975,9365514,9371295,9372403,9373104,9380162,9384411,9387556,9389958,9390615,9393678,9395618,9401590,9408058,9408717,9409181,9411088,9419909,9421461,9423952,9435648,9437152,9444030,9444243,9453462,9457489,9459810,9468672,9472847,9473365,9476753,9480816	0.600000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	72305913	72305914	72305913	-	High_confidence	23	24	24	1.273290	3.321324	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	0.958333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	37083986	37084007	37084006	+	High_confidence	3	4	12	0.636645	3.277613	chr21	37083879	37084118	DNA|hAT-Charlie|MER113B	+	chr21	37083625	37093402	TTC3|ENST00000484047.5	+	37083625,37087246,37087832,37088798,37090232,37091292,37093308	37084331,37087401,37088346,37088886,37090286,37091626,37093402	0.916667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	20658385	20658404	20658403	+	High_confidence	3	3	9	0.477484	2.725481	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.888889
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	124631214	124631243	124631242	+	RAMPAGE_only	7	7	15	0.795806	2.732915	chr3	124631189	124632228	LINE|L2|L2a	+	chr3	124584681	124650915	KALRN|ENST00000454902.1	+	124584681,124632419,124633848,124650807	124584906,124632703,124633953,124650915	0.666667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	44914307	44914322	44914321	+	High_confidence	36	37	66	3.501548	4.374287	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.878788
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	32403105	32403117	32403116	-	RAMPAGE_only	6	9	14	0.742753	3.664498	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	52569721	52569722	52569721	-	High_confidence	8	8	8	0.424430	2.750000	chr15	52569688	52569809	LINE|L2|L2	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	0.625000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	50783199	50783215	50783214	+	High_confidence	3	3	8	0.424430	2.500000	chr22	50783102	50783247	SINE|Alu|AluJr	-	chr22	50783253	50799305	RPL23AP82|ENST00000467796.5	+	50783253,50785172,50798654	50783294,50785293,50799305	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	73712664	73712806	73712805	-	RAMPAGE_only	9	9	82	4.350408	4.905675	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	0.975610
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	73787469	73787480	73787469	+	High_confidence	2	2	9	0.477484	2.500000	chr11	73787272	73787558	SINE|Alu|AluSx1	+	chr11	73787315	73864611	MRPL48|ENST00000310614.11	+	73787315,73805026,73808312,73825707,73844806,73859906,73863171,73864295	73787992,73805079,73808350,73825796,73844976,73860009,73863261,73864611	0.888889
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	4434095	4434104	4434095	-	High_confidence	7	7	16	0.848860	3.125000	chr16	4433925	4434279	LTR|ERVL-MaLR|THE1C	-	chr16	4433201	4433387	AC012676.2|ENST00000619258.1	-	4433201	4433387	0.750000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	176162963	176162985	176162963	-	RAMPAGE_only	2	2	6	0.318323	2.584963	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.833333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	143281653	143281687	143281686	-	High_confidence	10	13	44	2.334365	4.673601	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281250	MINCR|ENST00000519852.5	-	143280827,143281092	143280997,143281250	0.545455
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	195356169	195356170	195356169	-	High_confidence	8	9	12	0.636645	2.594907	chr3	195355936	195357733	LINE|L1|L1M1	+	chr3	195333081	195356212	ACAP2|ENST00000423531.3	-	195333081,195336931,195342470,195345258,195356067	195333123,195336976,195342654,195345317,195356212	0.916667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	76094058	76094059	76094058	+	RAMPAGE_only	12	12	16	0.848860	2.682589	chr4	76093875	76094237	LTR|ERVL-MaLR|MLT1A	+	chr4	76082498	76112412	ART3|ENST00000511188.1	+	76082498,76097643,76098954,76100290,76100794,76100989,76103936,76104596,76105521,76107760,76112385	76082535,76097676,76098987,76100320,76100824,76101019,76103969,76104629,76105554,76107793,76112412	0.812500
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	63618045	63618046	63618045	-	High_confidence	17	18	18	0.954968	3.572469	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63531087	63618046	AC138305.1|ENST00000564290.1	-	63531087,63617692	63531304,63618046	0.611111
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	129488846	129488857	129488856	+	High_confidence	17	17	32	1.697720	3.902518	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.937500
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	62897430	62897431	62897430	+	High_confidence	16	16	17	0.901914	2.852217	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.764706
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	111911611	111911613	111911611	+	High_confidence	8	14	15	0.795806	3.664498	chr3	111911655	111911757	DNA|hAT-Ac|OldhAT1	+	chr3	111911609	111976465	PHLDB2|ENST00000495180.1	+	111911609,111913318,111919071,111920281,111932268,111939474,111940534,111945267,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111911724,111913702,111919215,111920419,111932397,111939630,111940645,111945357,111954029,111962312,111966703,111967824,111969909,111973817,111976465	0.733333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	170226587	170226588	170226587	+	High_confidence	56	61	81	4.297355	5.537139	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.567901
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	47486752	47486784	47486752	-	High_confidence	3	3	11	0.583591	2.846439	chr11	47486415	47486707	SINE|Alu|AluSz6	-	chr11	47477295	47486799	CELF1|ENST00000422993.2	-	47477295,47478876,47482694,47484388,47486749	47477425,47478952,47482856,47484523,47486799	0.545455
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	15740077	15740084	15740077	-	RAMPAGE_only	7	7	13	0.689699	3.084963	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.923077
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	44907391	44907410	44907391	+	RAMPAGE_only	2	2	9	0.477484	2.500000	chr20	44907296	44907477	SINE|Alu|FAM	+	chr20	44885710	44908532	YWHAB|ENST00000372839.7	+	44885710,44887647,44901530,44903992,44904967,44906000,44906381	44885886,44887742,44901833,44904116,44905131,44906096,44908532	0.888889
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	6208681	6208682	6208681	-	High_confidence	59	59	59	3.130172	3.047530	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	22028376	22028424	22028403	+	RAMPAGE_only	7	7	30	1.591613	3.485918	chr8	22028341	22028629	SINE|Alu|AluSz	-	chr8	22025248	22036682	NPM2|ENST00000621538.4	+	22025248,22025435,22025646,22033129,22034108,22034509,22036492,22036637	22025306,22025521,22025772,22033223,22034275,22034544,22036526,22036682	0.700000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	2727243	2727256	2727243	+	High_confidence	3	3	8	0.424430	2.807355	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.750000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	113873326	113873347	113873346	-	High_confidence	9	9	19	1.008021	3.576618	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.842105
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	2242922	2242923	2242922	+	High_confidence	11	12	12	0.636645	2.913977	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.916667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	68975842	68975849	68975842	-	High_confidence	5	5	14	0.742753	3.521641	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.500000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	112227198	112227225	112227198	+	High_confidence	5	5	13	0.689699	3.392747	chr11	112227196	112227258	SINE|MIR|MIR	+	chr11	112226431	112233810	PTS|ENST00000525803.1	+	112226431,112228593,112233162,112233431	112226526,112228673,112233233,112233810	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	132675338	132675374	132675338	-	High_confidence	5	5	28	1.485505	3.194237	chr8	132675252	132675288	SINE|MIR|MIRb	-	chr8	132570418	132675441	LRRC6|NM_001321965.1	-	132570418,132583693,132610165,132611293,132615037,132622610,132625271,132632739,132637934,132643373,132656829,132661459,132674557	132572480,132583779,132610261,132611363,132615097,132622688,132625454,132632963,132638107,132643686,132656907,132661627,132675441	0.928571
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	51403420	51403493	51403432	-	RAMPAGE_only	4	4	32	1.697720	3.507049	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	79631412	79631444	79631434	+	High_confidence	2	2	8	0.424430	2.750000	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	7566514	7566534	7566533	-	High_confidence	22	23	60	3.183226	4.555331	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7552461	7566996	AC004982.2|ENST00000609497.5	-	7552461,7555155,7565913	7552922,7555189,7566996	0.966667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	28234014	28234031	28234014	-	RAMPAGE_only	3	3	11	0.583591	2.721928	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.909091
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	3195732	3195779	3195772	-	High_confidence	43	44	81	4.297355	5.354627	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.962963
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	25022943	25022986	25022985	+	RAMPAGE_only	6	6	18	0.954968	2.725481	chr15	25022981	25023275	SINE|Alu|AluSx	+	chr15	24979556	25036490	MSTRG.7662.20	+	24979556,24979946,24981774,24998365,24998969,25000244,25001357,25002724,25019026,25019827,25020589,25036024	24979642,24980084,24982437,24998486,24999078,25000374,25001713,25002888,25019148,25019869,25035961,25036490	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	21200804	21200826	21200804	+	High_confidence	8	8	20	1.061075	3.826875	chr6	21200835	21201081	LINE|L1|L1MC3	+	chr6	21200811	21231441	CDKAL1|ENST00000476517.1	+	21200811,21201109,21230847	21200892,21201274,21231441	0.900000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	38825360	38825363	38825360	+	RAMPAGE_only	6	6	12	0.636645	3.251629	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	72363523	72363557	72363523	-	High_confidence	8	8	15	0.795806	3.106891	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.866667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	48683362	48683363	48683362	+	High_confidence	15	19	19	1.008021	3.326360	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	70401427	70401468	70401467	+	RAMPAGE_only	6	6	22	1.167183	4.011365	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.772727
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	5680226	5680259	5680240	-	High_confidence	16	16	61	3.236279	3.804301	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.967213
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	29887652	29887662	29887652	-	RAMPAGE_only	3	3	6	0.318323	2.584963	chr16	29887302	29887611	SINE|Alu|AluY	-	chr16	29876853	29886019	SEZ6L2|ENST00000568407.2	-	29876853,29877270,29878286,29879863,29885585	29876950,29877467,29878425,29880064,29886019	0.833333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	54807566	54807583	54807582	+	High_confidence	3	4	11	0.583591	2.913977	chrX	54807588	54807638	SINE|MIR|MIRb	+	chrX	54807598	54815694	MAGED2|ENST00000375053.6	+	54807598,54809302,54809721,54810820,54811249,54811573,54812156,54812944,54813117,54813487,54814660,54815247	54807802,54809376,54810213,54811129,54811313,54811653,54812251,54813024,54813160,54813550,54814775,54815694	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	13376708	13376714	13376710	-	High_confidence	4	7	13	0.689699	2.873141	chr12	13376413	13376888	LTR|ERVL|MLT2B1	-	chr12	13371088	13376711	LINC01559|ENST00000318426.6	-	13371088,13376223,13376513	13373438,13376425,13376711	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	147131975	147131986	147131985	-	RAMPAGE_only	7	7	12	0.636645	3.459432	chr6	147131896	147132081	DNA|DNA|UCON78	+	chr6	146842565	147204540	STXBP5-AS1|ENST00000427394.5	-	146842565,146844318,146850824,146860617,146972044,147001440,147074804,147119416,147173592,147173814,147204412	146842809,146844712,146851331,146860743,146972070,147001543,147074847,147119477,147173647,147173948,147204540	0.500000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	34244698	34244699	34244698	-	High_confidence	9	9	9	0.477484	2.725481	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244698	MSTRG.18632.3	-	34175821,34179012,34182679,34200820,34218294,34219916,34244615	34175957,34179097,34182867,34200921,34218450,34219950,34244698	0.555556
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	3292648	3292673	3292672	-	RAMPAGE_only	4	4	13	0.689699	2.688722	chr2	3292493	3292680	SINE|MIR|MIRb	-	chr2	3188924	3320544	EIPR1|ENST00000478754.5	-	3188924,3192413,3193998,3196880,3214148,3257298,3261714,3261916,3318856,3319220,3319610	3189508,3192581,3194166,3197017,3214248,3257455,3261827,3262137,3318958,3319468,3320544	0.615385
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	124665932	124665935	124665934	-	RAMPAGE_only	4	6	8	0.424430	2.521641	chr4	124665924	124666056	SINE|tRNA-RTE|MamSINE1	-	chr4	124664047	124712732	ANKRD50|NM_020337.2	-	124664047,124668983,124678675,124709999,124712457	124667514,124672534,124678905,124711274,124712732	0.875000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	10170539	10170540	10170539	+	High_confidence	4	4	7	0.371376	2.521641	chr12	10170491	10170780	SINE|Alu|AluSg	-	chr12	10170728	10175522	TMEM52B|ENST00000545924.1	+	10170728,10175281	10170851,10175522	0.571429
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	132285409	132285413	132285409	-	High_confidence	6	6	10	0.530538	2.721928	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.700000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	98660582	98660625	98660582	+	RAMPAGE_only	7	7	23	1.220237	3.740953	chr1	98660524	98660585	LINE|L2|L2b	-	chr1	98661679	98760500	SNX7|NM_015976.4	+	98661679,98684884,98691074,98691534,98695517,98698705,98701816,98738236,98760053	98661911,98685067,98691185,98691699,98695716,98698905,98701903,98738389,98760500	0.695652
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	81170413	81170433	81170426	-	High_confidence	6	6	31	1.644667	4.131300	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.935484
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	91022611	91022663	91022662	+	High_confidence	5	5	24	1.273290	4.055958	chr15	91022701	91022863	SINE|Alu|AluSx3	+	chr15	91022621	91031140	VPS33B-DT|ENST00000501381.3	+	91022621,91023312,91029880,91030658	91022740,91023971,91030241,91031140	0.666667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	91907424	91907425	91907424	-	High_confidence	24	27	30	1.591613	3.364735	chr8	91907266	91907430	SINE|MIR|MIRc	-	chr8	91564979	91907453	AC103409.1|ENST00000518416.1	-	91564979,91773069,91861474,91907273	91565141,91773199,91861579,91907453	0.733333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	45720378	45720469	45720378	+	RAMPAGE_only	10	12	84	4.456516	4.683212	chr7	45720228	45720541	SINE|Alu|AluSx1	+	chr7	45574525	45723116	ADCY1|NM_021116.2	+	45574525,45592758,45610378,45622631,45648669,45657726,45660041,45662058,45677868,45678165,45679708,45684978,45685961,45686546,45703375,45703599,45704517,45708349,45710527,45713692	45575182,45592908,45610497,45622743,45648797,45657885,45660183,45662214,45678063,45678263,45679793,45685068,45686215,45686673,45703492,45703746,45704616,45708464,45710652,45723116	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	31376356	31376357	31376356	-	High_confidence	24	24	24	1.273290	3.688722	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.875000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	143039233	143039267	143039256	+	High_confidence	5	6	18	0.954968	3.461320	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.888889
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	39657322	39657327	39657322	+	High_confidence	5	5	11	0.583591	2.921928	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657319	39662889	B3GALT5|NM_033171.2	+	39657319,39657784,39659752,39660559	39657599,39657893,39659912,39662889	0.909091
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	85378112	85378113	85378112	-	High_confidence	59	61	61	3.236279	3.497726	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.967213
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	52617087	52617089	52617087	+	High_confidence	4	8	10	0.530538	2.725481	chr13	52616905	52617215	SINE|Alu|AluSg	+	chr13	52617469	52643784	HNRNPA1L2|NM_001011725.1	+	52617469,52621988,52627437,52632421,52637304,52642405	52617682,52622264,52627578,52632494,52637446,52643784	0.500000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	123390760	123390761	123390760	+	High_confidence	4	4	7	0.371376	2.584963	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.571429
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	80059915	80059926	80059918	+	High_confidence	63	74	140	7.427527	4.654378	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.992857
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	130428509	130428553	130428509	-	High_confidence	10	10	68	3.607656	5.144083	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046259.1	-	130416749,130419070,130425090,130425913,130427703	130418298,130419245,130425158,130426038,130428546	0.985294
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	155013617	155013764	155013689	+	High_confidence	8	8	59	3.130172	5.119600	chr6	155013693	155013753	DNA|TcMar-Tigger|Tigger19a	+	chr6	155013645	155129479	TIAM2|ENST00000538270.5	+	155013645,155090288,155127489,155129217	155013823,155090379,155127600,155129479	0.610169
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	135548339	135548351	135548350	+	RAMPAGE_only	7	7	21	1.114129	3.584184	chr8	135548149	135548560	LINE|L2|L2a	-	chr8	135542673	135647419	KHDRBS3|ENST00000517859.5	+	135542673,135548753,135557447,135581877,135645058,135646992	135542770,135548900,135557587,135582073,135645117,135647419	0.523810
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	46489999	46490037	46489999	-	High_confidence	3	3	19	1.008021	3.366091	chr19	46489891	46489994	LINE|L2|L2a	-	chr19	46481084	46490120	PPP5D1|ENST00000595691.1	-	46481084,46489865	46481440,46490120	0.736842
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	4355592	4355593	4355592	-	High_confidence	129	129	129	6.843935	4.863817	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.930233
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73837439	73837484	73837450	-	RAMPAGE_only	6	7	31	1.644667	2.713815	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.935484
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	70453652	70453695	70453652	+	RAMPAGE_only	5	5	17	0.901914	3.250000	chrX	70453648	70453712	DNA|hAT-Ac|OldhAT1	+	chrX	70452304	70505487	DLG3|ENST00000374355.7	+	70452304,70453636,70454213,70479149,70492106,70492520,70493375,70497179,70498519,70499175,70499876,70500470,70500897,70502162	70452755,70453793,70454316,70479264,70492283,70492596,70493475,70497221,70498570,70499277,70500049,70500580,70500989,70505487	0.941176
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	8384046	8384070	8384046	-	High_confidence	4	4	11	0.583591	3.121928	chr17	8384033	8384050	SINE|Alu|AluSq	-	chr17	8377515	8383250	RPL26|ENST00000293842.10	-	8377515,8379795,8382142,8383156	8377692,8379936,8382315,8383250	0.545455
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	123179123	123179221	123179220	-	RAMPAGE_only	6	7	28	1.485505	4.000646	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.928571
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	112864234	112864235	112864234	-	RAMPAGE_only	14	14	14	0.742753	2.842371	chr2	112863967	112864465	LTR|ERVL|MLT2A2	-	chr2	112829750	112836903	IL1B|ENST00000263341.6	-	112829750,112831291,112832661,112833373,112835565,112836182,112836707	112830573,112831422,112832826,112833575,112835617,112836244,112836903	0.500000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	100268280	100268281	100268280	+	RAMPAGE_only	16	16	18	0.954968	2.771902	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.944444
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	241372949	241372972	241372949	+	RAMPAGE_only	20	20	53	2.811849	4.291336	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241356296	241466030	FARP2|ENST00000373287.8	+	241356296,241373083,241403827,241404798,241407536,241411032,241413306,241417961,241431678,241434157,241434961,241436480,241441303,241456746,241462522,241463334,241463898,241465459	241356388,241373290,241403932,241404841,241407615,241411130,241413421,241418109,241431774,241434321,241435030,241436538,241441556,241456922,241462612,241463468,241463980,241466030	0.962264
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	160199150	160199156	160199150	+	High_confidence	143	146	266	14.112300	5.097203	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.958647
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	179517522	179517558	179517545	+	RAMPAGE_only	39	45	126	6.684774	6.207489	chr1	179516075	179517979	LINE|L1|L1PB1	-	chr1	179534492	179554713	AXDND1|ENST00000484455.1	+	179534492,179554511	179534962,179554713	0.698413
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	96303166	96303280	96303166	-	RAMPAGE_only	23	23	75	3.979032	5.297508	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.946667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	35713435	35713480	35713435	-	High_confidence	3	3	10	0.530538	2.503258	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.800000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	3795748	3795789	3795788	+	High_confidence	6	6	21	1.114129	3.221928	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.952381
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	51354788	51354850	51354788	-	High_confidence	34	35	239	12.679849	5.489184	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.995816
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	129439733	129439773	129439733	-	High_confidence	2	2	10	0.530538	2.725481	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129431265	129440007	MBD4|ENST00000503197.5	-	129431265,129432555,129433097,129433849,129434061,129436442,129437719,129439729	129431578,129432606,129433247,129433984,129434136,129437308,129437950,129440007	0.900000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	40453541	40453549	40453541	-	High_confidence	4	4	13	0.689699	2.855389	chr2	40453521	40453703	DNA|hAT-Charlie|MER5B	+	chr2	40115252	40453438	MSTRG.13129.8	-	40115252,40139400,40160764,40164853,40170280,40174824,40178386,40428472,40453160	40115629,40139676,40160864,40164984,40170349,40174842,40178493,40430304,40453438	0.923077
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	128684459	128684485	128684459	-	RAMPAGE_only	5	5	18	0.954968	3.461320	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.833333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	37297344	37297345	37297344	+	High_confidence	7	7	7	0.371376	2.521641	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.857143
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	6248470	6248471	6248470	+	RAMPAGE_only	225	225	226	11.990150	5.802483	chr9	6248331	6248575	LTR|ERVL-MaLR|MSTD	+	chr9	6241694	6257982	IL33|ENST00000456383.3	+	6241694,6250473,6251139,6253551,6254461,6255967	6241785,6250599,6251265,6253602,6254553,6257982	0.845133
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	65570509	65570536	65570509	+	High_confidence	9	11	42	2.228258	4.634184	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.761905
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	99892029	99892057	99892056	-	RAMPAGE_only	18	18	59	3.130172	4.271871	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	39809843	39809868	39809858	-	High_confidence	19	26	60	3.183226	4.416459	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.683333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	34244740	34244774	34244753	-	High_confidence	4	4	19	1.008021	3.576618	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244796	MSTRG.18632.2	-	34175821,34179012,34182679,34200820,34218294,34239374,34244615	34175957,34179097,34182867,34200921,34218450,34239448,34244796	0.789474
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	206009891	206010012	206009891	-	RAMPAGE_only	5	5	44	2.334365	4.589021	chr1	206009145	206009903	LINE|L1|L1MC5a	+	chr1	206009264	206023895	CTSE|ENST00000360218.2	-	206009264,206012307,206013771,206015930,206021048,206022149,206022900,206023723	206010347,206012406,206013894,206016130,206021167,206022267,206023057,206023895	0.886364
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	98733168	98733222	98733221	+	High_confidence	3	3	18	0.954968	3.392147	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.888889
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	106682401	106682419	106682401	-	RAMPAGE_only	4	4	12	0.636645	2.845351	chr11	106682331	106682490	DNA|hAT-Charlie|MER5B	+	chr11	106674011	107018445	GUCY1A2|NM_001256424.1	-	106674011,106708511,106746550,106776438,106809992,106939459,106978618,106986069,107017752	106687756,106708666,106746643,106776582,106810478,106940178,106978740,106986131,107018445	0.916667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	95121537	95121558	95121557	-	High_confidence	4	5	11	0.583591	2.921928	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.909091
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	15780727	15780733	15780729	-	High_confidence	6	9	18	0.954968	3.499228	chr12	15780696	15780826	LINE|L2|L2c	+	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.777778
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	140700445	140700452	140700445	+	High_confidence	1723	1937	3114	165.209412	4.979979	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.984265
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	109383424	109383447	109383446	-	High_confidence	5	6	24	1.273290	3.788755	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.916667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	9140390	9140428	9140390	+	High_confidence	29	29	146	7.745849	5.671371	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.767123
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	102512272	102512273	102512272	+	RAMPAGE_only	7	7	8	0.424430	2.807355	chr2	102512307	102512701	LINE|CR1|L3	+	chr2	102473302	102533972	SLC9A4|NM_001011552.3	+	102473302,102478838,102503447,102505253,102508078,102508846,102512202,102514089,102519858,102525023,102526258,102532329	102474015,102479302,102503707,102505471,102508281,102508933,102512273,102514251,102519955,102525155,102526346,102533972	0.875000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100829515	100829605	100829592	+	High_confidence	5	6	35	1.856882	4.432620	chr14	100829596	100829639	LINE|L2|L2b	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.685714
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	2798816	2798822	2798821	+	RAMPAGE_only	3	3	8	0.424430	2.521641	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2794952	2805423	FKBP4|ENST00000001008.5	+	2794952,2797137,2797728,2798705,2799087,2799849,2800038,2800391,2801116,2803150	2795244,2797282,2797871,2798826,2799244,2799940,2800122,2800577,2801356,2805423	0.875000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	60	60	60	3.183226	3.362372	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	141332616	141332617	141332616	-	High_confidence	52	52	54	2.864903	4.250746	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.962963
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	36807869	36807870	36807869	-	RAMPAGE_only	7	7	9	0.477484	2.503258	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796071	36828963	TPGS2|ENST00000593035.5	-	36796071,36798448,36800197,36805373,36807846,36818893,36828682	36797050,36798609,36800311,36805397,36807934,36818973,36828963	0.888889
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	41280557	41280580	41280579	+	RAMPAGE_only	6	8	15	0.795806	2.789898	chr15	41280505	41280810	SINE|Alu|AluSx3	-	chr15	41231238	41281887	CHP1|NM_007236.4	+	41231238,41243666,41256909,41262755,41270556,41278766,41279335	41231449,41243739,41256990,41262883,41270618,41278889,41281887	0.933333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	53464815	53464837	53464815	+	RAMPAGE_only	7	7	13	0.689699	3.251629	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.923077
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	95312917	95313132	95313131	-	RAMPAGE_only	51	51	133	7.056150	4.407067	chr10	95313103	95313210	DNA|hAT-Tip100|UCON132b	+	chr10	95311772	95339327	SORBS1|ENST00000649911.1	-	95311772,95318319,95321962,95339132	95315126,95318432,95322153,95339327	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	31119190	31119214	31119190	-	High_confidence	2	4	10	0.530538	2.921928	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.900000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	107580245	107580267	107580245	+	High_confidence	671	673	3255	172.689993	7.252256	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.916436
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	2205756	2205860	2205823	+	High_confidence	21	23	219	11.618774	5.227871	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.995434
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	137254901	137254969	137254940	-	RAMPAGE_only	107	112	252	13.369548	5.925586	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.964286
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	195356211	195356212	195356211	-	High_confidence	7	7	7	0.371376	2.521641	chr3	195355936	195357733	LINE|L1|L1M1	+	chr3	195333081	195356212	ACAP2|ENST00000423531.3	-	195333081,195336931,195342470,195345258,195356067	195333123,195336976,195342654,195345317,195356212	0.857143
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	23939529	23939594	23939565	+	High_confidence	6	6	20	1.061075	4.021928	chr2	23939241	23939827	LTR|ERV1|MER92B	-	chr2	23940418	24004909	UBXN2A|ENST00000309033.4	+	23940418,23958300,23971275,23976968,23982895,23984672,23999671	23940648,23958355,23971414,23977075,23983033,23984831,24004909	0.800000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	142474407	142474408	142474407	-	High_confidence	10	10	13	0.689699	3.084963	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.846154
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	23752500	23752527	23752521	+	High_confidence	2	2	8	0.424430	2.807355	chr7	23752350	23752640	SINE|Alu|AluSz6	-	chr7	23752802	23772274	STK31|ENST00000478321.1	+	23752802,23754314,23755055,23762800,23768994,23769639,23771004,23772146	23752832,23754474,23755196,23762923,23769174,23769756,23771124,23772274	0.875000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	143043234	143043274	143043273	+	RAMPAGE_only	4	4	14	0.742753	3.664498	chr3	143043314	143043694	LINE|L2|L2b	+	chr3	143036082	143056846	U2SURP|ENST00000467348.1	+	143036082,143037178,143038107,143038893,143043116,143050938,143053675,143056311	143036104,143037335,143038203,143038960,143043276,143051049,143053794,143056846	0.571429
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	75248150	75248151	75248150	-	High_confidence	17	18	24	1.273290	3.490602	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.958333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	37157446	37157468	37157446	-	High_confidence	3	3	8	0.424430	2.521641	chr2	37157310	37157469	SINE|MIR|MIRb	-	chr2	37141634	37157065	EIF2AK2|ENST00000390013.3	-	37141634,37146852,37147687,37148856,37156907	37141701,37146973,37147822,37148939,37157065	0.500000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	13419717	13419730	13419717	-	RAMPAGE_only	3	5	11	0.583591	2.646439	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.909091
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	65577190	65577241	65577208	+	RAMPAGE_only	4	4	22	1.167183	3.630413	chr15	65577153	65577426	SINE|Alu|AluJr	+	chr15	65530488	65578355	HACD3|NM_016395.2	+	65530488,65551675,65554886,65556738,65558679,65562773,65564214,65570090,65571547,65572234,65576302	65530718,65551718,65554960,65556903,65558731,65562884,65564342,65570203,65571654,65572366,65578355	0.954545
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	49646469	49646483	49646469	-	High_confidence	3	3	17	0.901914	3.028639	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.941176
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	67183451	67183467	67183451	-	High_confidence	2	2	12	0.636645	3.251629	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	94691182	94691193	94691182	+	High_confidence	5	5	14	0.742753	3.324863	chr5	94691104	94691211	LINE|Penelope|Penelope1_Vert	+	chr5	94691194	94692180	SLF1|ENST00000475916.1	+	94691194,94692073	94691656,94692180	0.642857
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	68736450	68736460	68736459	-	RAMPAGE_only	8	8	17	0.901914	3.077820	chr4	68735466	68736444	LTR|ERV1|MER61-int	-	chr4	68704599	68712498	AC147055.1|ENST00000509261.1	-	68704599,68708647,68710039,68712312	68704874,68708855,68710120,68712498	0.941176
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	37855566	37855577	37855576	+	RAMPAGE_only	5	5	10	0.530538	2.646439	chr22	37855622	37855711	SINE|tRNA|LFSINE_Vert	+	chr22	37858564	37871290	EIF3L|ENST00000464790.1	+	37858564,37862968,37863271,37870175,37871199	37858740,37863038,37863345,37870347,37871290	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	55279538	55279543	55279538	+	RAMPAGE_only	15	15	24	1.273290	4.418296	chr2	55279270	55280234	LTR|ERVK|LTR5_Hs	+	chr2	55314160	55340227	AC012358.3|ENST00000630025.2	+	55314160,55329421,55332138,55339502	55314251,55329713,55332261,55340227	0.500000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	6582139	6582199	6582139	-	High_confidence	3	3	20	1.061075	3.684184	chr12	6581880	6582102	SINE|Alu|AluSx1	-	chr12	6570190	6581343	CHD4|ENST00000644652.1	-	6570190,6570868,6573073,6577784,6578028,6578408,6578845,6580581,6581043,6581290	6570693,6571032,6573269,6577917,6578137,6578546,6578917,6580699,6581173,6581343	0.800000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	26399477	26399495	26399494	-	High_confidence	3	3	9	0.477484	2.750000	chr7	26399411	26399720	DNA|hAT-Charlie|MER33	+	chr7	26372018	26399418	LOC105375304|NR_136272.1	-	26372018,26399340	26372568,26399418	0.777778
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	19349989	19350009	19350008	+	RAMPAGE_only	8	8	20	1.061075	3.010571	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19352828	19355445	PDHA1|ENST00000479146.1	+	19352828,19354490,19355348	19353173,19354583,19355445	0.500000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	102449836	102449845	102449836	+	High_confidence	4	4	10	0.530538	3.121928	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.600000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	43080033	43080034	43080033	+	RAMPAGE_only	13	13	18	0.954968	3.461320	chr8	43078293	43080600	DNA|TcMar-Tigger|Tigger1	+	chr8	43076646	43085780	FNTA|ENST00000525099.1	+	43076646,43084709,43085159	43083180,43084881,43085780	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	32446972	32446988	32446977	+	High_confidence	13	14	41	2.175204	4.647322	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.926829
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	102450314	102450315	102450314	-	High_confidence	7	7	10	0.530538	2.921928	chr11	102450237	102450387	LTR|ERVL-MaLR|MLT1K	+	chr11	102396335	102450507	MSTRG.4421.2	-	102396335,102401538,102401915,102448811,102450156	102398891,102401692,102402206,102448868,102450507	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	155612319	155612360	155612335	+	High_confidence	3	3	11	0.583591	2.732159	chrX	155612307	155612443	SINE|MIR|MIR3	-	chrX	155612564	155782459	SPRY3|NM_001304990.1	+	155612564,155767961,155773765	155612647,155768136,155782459	0.727273
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	56272344	56272361	56272344	+	High_confidence	2	2	7	0.371376	2.584963	chr4	56272344	56272407	LINE|CR1|L3	+	chr4	56272403	56328092	KIAA1211|ENST00000541073.5	+	56272403,56298213,56301225,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56272492,56298349,56301247,56307699,56310734,56313379,56316689,56323567,56324266,56328092	0.857143
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	233012631	233012646	233012637	+	High_confidence	6	7	17	0.901914	2.774397	chr2	233012609	233012781	DNA|hAT-Tip100|MER45A	+	chr2	233012613	233015885	AC106876.1|ENST00000409905.1	+	233012613,233013139,233015706	233012969,233013247,233015885	0.941176
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	43167346	43167347	43167346	-	RAMPAGE_only	70	70	81	4.297355	4.652244	chr17	43167246	43167698	LTR|ERV1|LTR2	-	chr17	43148367	43170316	AC060780.1|ENST00000635600.1	-	43148367,43159422,43166979,43170125	43148783,43159727,43167849,43170316	0.938272
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	56216141	56216142	56216141	+	High_confidence	9	9	14	0.742753	3.093069	chr4	56216025	56216165	SINE|MIR|MIR3	+	chr4	56216101	56328625	KIAA1211|ENST00000504228.6	+	56216101,56272320,56298213,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56216273,56272492,56298349,56307699,56310734,56313379,56316689,56323567,56324266,56328625	0.785714
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	116648844	116648875	116648847	-	RAMPAGE_only	3	3	16	0.848860	3.240224	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.937500
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	147839192	147839255	147839237	-	High_confidence	16	17	52	2.758796	4.733812	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.865385
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	104763740	104763756	104763755	+	High_confidence	10	13	21	1.114129	3.308695	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NM_018376.3	+	104763740,104766324,104768862,104770848,104772821,104772996	104764300,104766535,104769021,104770998,104772908,104777764	0.952381
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	47743720	47743729	47743725	+	High_confidence	5	5	20	1.061075	3.536887	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.800000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	2667182	2667196	2667195	+	High_confidence	5	5	16	0.848860	3.500000	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.937500
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	101466871	101466875	101466874	-	RAMPAGE_only	3	3	8	0.424430	2.807355	chr3	101466714	101469542	LINE|L1|L1PA6	+	chr3	101324204	101513184	SENP7|ENST00000394095.6	-	101324204,101327665,101328477,101328645,101330333,101331984,101332769,101337508,101340094,101341645,101343685,101347871,101351617,101361714,101364833,101366429,101367829,101372007,101398860,101417592,101458954,101493872,101501069,101513090	101326080,101327816,101328546,101328689,101330386,101332109,101332862,101337631,101340211,101341779,101343954,101348051,101351651,101361861,101364991,101366769,101368011,101372126,101399055,101417790,101459052,101493968,101501119,101513184	0.750000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73841836	73841887	73841842	-	High_confidence	4	4	25	1.326344	4.088779	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.840000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	50756938	50756950	50756949	+	High_confidence	7	7	21	1.114129	3.880180	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.857143
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	97241165	97241170	97241165	+	RAMPAGE_only	4	4	8	0.424430	2.521641	chr2	97241018	97241180	LINE|L2|L2c	+	chr2	97234940	97252593	MSTRG.13550.8	+	97234940,97241265,97243845,97245156,97247475,97249143,97250143,97250773	97235201,97241479,97244029,97246071,97247628,97249645,97250173,97252593	0.875000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	50785227	50785261	50785227	+	RAMPAGE_only	2	2	15	0.795806	3.640224	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.933333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	15657883	15657884	15657883	+	RAMPAGE_only	19	19	19	1.008021	3.300559	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	59619894	59619923	59619894	+	High_confidence	803	992	2946	156.296381	6.177588	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.944331
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	31117719	31117767	31117757	-	High_confidence	5	5	19	1.008021	3.787144	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	31119264	31119313	31119264	-	High_confidence	5	5	21	1.114129	3.236857	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.952381
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	113246368	113246370	113246368	+	High_confidence	2	5	6	0.318323	2.584963	chr11	113246334	113246435	SINE|5S-Deu-L2|AmnSINE1	+	chr11	113246107	113260317	NCAM1|ENST00000534516.2	+	113246107,113255876,113260145	113246370,113256001,113260317	0.833333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	29970323	29970365	29970364	-	High_confidence	4	4	18	0.954968	3.725481	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	0.944444
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	50226714	50226728	50226714	+	High_confidence	17	17	54	2.864903	4.706199	chr3	50226614	50226899	SINE|Alu|AluYk2	-	chr3	50226736	50258898	GNAI2|ENST00000446079.5	+	50226736,50251619,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50227193,50251743,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50258898	0.981481
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	119875396	119875414	119875396	+	RAMPAGE_only	3	3	6	0.318323	2.584963	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	109383492	109383504	109383497	-	High_confidence	2	2	9	0.477484	3.000000	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.888889
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	153967497	153967512	153967511	+	High_confidence	8	8	15	0.795806	3.373557	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.600000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	114759258	114759277	114759276	-	High_confidence	4	4	8	0.424430	2.500000	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.625000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	111387766	111387795	111387766	-	RAMPAGE_only	2	2	6	0.318323	2.584963	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.833333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	2867841	2867851	2867850	+	High_confidence	7	7	13	0.689699	2.815072	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	101550452	101550474	101550452	+	High_confidence	4	4	24	1.273290	3.740602	chrX	101550258	101550488	LINE|L1|L1M5	+	chrX	101550530	101554700	ARMCX1|ENST00000372829.7	+	101550530,101550970,101551568,101552808	101550660,101551024,101551633,101554700	0.958333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	158173024	158173025	158173024	-	High_confidence	50	52	55	2.917957	4.840759	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.854545
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	63563627	63563628	63563627	-	High_confidence	7	7	10	0.530538	2.521928	chr11	63563436	63563737	SINE|Alu|AluY	+	chr11	63552769	63563383	HRASLS2|ENST00000255695.1	-	63552769,63558391,63560084,63563315	63553065,63558660,63560193,63563383	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	94435396	94435397	94435396	-	RAMPAGE_only	7	7	10	0.530538	2.921928	chr12	94435233	94435447	LTR|ERV1|MER39	+	chr12	94308285	94412595	CEP83|ENST00000397807.6	-	94308285,94309917,94312913,94312930,94331699,94333481,94335588,94367793,94368056,94369921,94375885,94378790,94400849,94403169,94411696,94412317	94308917,94310107,94312929,94313017,94331829,94333639,94335664,94367943,94368201,94370036,94376017,94379042,94400981,94403262,94411847,94412595	0.600000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	133396126	133396139	133396138	+	High_confidence	11	11	19	1.008021	3.413834	chr7	133396038	133396214	DNA|hAT-Charlie|MER5A	+	chr7	133396138	133630138	EXOC4|ENST00000486409.6	+	133396138,133475327,133480049,133630044	133396414,133475473,133480138,133630138	0.947368
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	135965718	135965773	135965718	+	High_confidence	28	29	309	16.393612	6.245778	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.974110
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	59175877	59175919	59175877	+	High_confidence	7	7	29	1.538559	4.444188	chr10	59175778	59175877	LINE|L2|L2a	+	chr10	59176587	59247774	PHYHIPL|NM_032439.3	+	59176587,59234303,59236482,59238587,59245056	59176959,59234500,59236657,59238705,59247774	0.896552
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	155343313	155343327	155343326	-	RAMPAGE_only	3	3	7	0.371376	2.521641	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.857143
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	134527596	134527597	134527596	+	High_confidence	434	447	455	24.139461	6.820120	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.956044
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	94691052	94691096	94691071	+	High_confidence	17	17	69	3.660710	4.954277	chr5	94691104	94691211	LINE|Penelope|Penelope1_Vert	+	chr5	94691033	94695871	MSTRG.19060.7	+	94691033,94691563,94692073,94694830	94691158,94691656,94692256,94695871	0.826087
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	2728418	2728462	2728461	-	High_confidence	6	6	18	0.954968	3.852169	chr8	2728201	2728557	LTR|ERV1|LTR12C	+	chr8	2669801	2728419	AC246817.2|ENST00000517357.5	-	2669801,2674729,2678856,2705214,2728329	2670009,2674845,2678939,2705286,2728419	0.500000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	103181328	103181329	103181328	-	RAMPAGE_only	33	34	34	1.803828	4.498940	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.558824
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	138032205	138032262	138032226	+	RAMPAGE_only	5	5	33	1.750774	4.202820	chr3	138032139	138032441	SINE|Alu|AluJb	+	chr3	138010163	138033652	CLDN18|NM_016369.3	+	138010163,138023657,138024606,138029796,138030969	138010445,138023822,138024724,138029907,138033652	0.969697
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	51027665	51027684	51027667	-	High_confidence	8	11	29	1.538559	3.699514	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51024222	51027206	KLK11|ENST00000594458.1	-	51024222,51024633,51025591,51026537	51024310,51024794,51025666,51027206	0.620690
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	34988764	34988792	34988764	-	High_confidence	4	4	21	1.114129	3.499228	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.857143
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	47795005	47795027	47795014	-	High_confidence	3	3	9	0.477484	2.750000	chr14	47794965	47800647	LINE|L1|L1PA2	+	chr14	47764952	47795014	LINC00648|NR_039996.1	-	47764952,47789905,47794971	47767757,47789943,47795014	0.666667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	11058810	11058830	11058814	-	RAMPAGE_only	9	9	22	1.167183	2.965957	chr1	11058682	11058785	SINE|MIR|MIRc	-	chr1	11054588	11060024	SRM|ENST00000376957.6	-	11054588,11054961,11055780,11056010,11056603,11058799,11059224,11059776	11054885,11055084,11055926,11056094,11056757,11058892,11059345,11060024	0.909091
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	55796682	55796688	55796687	-	High_confidence	16	17	25	1.326344	4.053509	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796688	LINC00520|ENST00000649892.1	-	55781136,55793367,55796602	55782581,55793456,55796688	0.520000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	12522791	12522818	12522810	+	RAMPAGE_only	4	4	23	1.220237	3.936180	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.869565
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	643635	643648	643635	-	High_confidence	10	10	20	1.061075	3.084184	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	1721700	1721702	1721701	-	High_confidence	3	5	8	0.424430	2.521641	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.500000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	40363394	40363395	40363394	-	RAMPAGE_only	9	9	9	0.477484	3.169925	chr6	40362782	40364444	LINE|L1|L1MEc	+	chr6	40358743	40369474	AL139275.1|ENST00000447315.1	-	40358743,40369388	40359481,40369474	0.888889
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	12069749	12069810	12069758	+	High_confidence	15	23	63	3.342387	5.405809	chr17	12069730	12069890	LINE|CR1|L3	+	chr17	12069755	12125350	MAP2K4|ENST00000579089.5	+	12069755,12095574,12107789,12110374,12113232,12125293	12069849,12095694,12107909,12110426,12113360,12125350	0.634921
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	25820171	25820193	25820192	+	High_confidence	5	5	20	1.061075	3.521928	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.950000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	46087114	46087166	46087114	-	High_confidence	4	4	18	0.954968	3.734522	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.833333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	99937889	99937907	99937889	+	RAMPAGE_only	7	7	16	0.848860	3.323231	chr10	99937898	99938057	SINE|MIR|MIRc	+	chr10	99927208	99958998	DNMBP-AS1|NR_024130.2	+	99927208,99928159,99955673,99956481,99956788	99927299,99928240,99955832,99956591,99958998	0.687500
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	22409279	22409311	22409282	+	RAMPAGE_only	21	29	112	5.942021	5.658188	chr12	22409250	22409629	LTR|ERVL-MaLR|MLT1G3	-	chr12	22601424	22618867	AC087241.1|ENST00000508615.2	+	22601424,22618484	22601470,22618867	0.607143
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	113773685	113773687	113773685	-	High_confidence	9	13	18	0.954968	2.586888	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113744576	113773683	LINC01234|NR_110026.1	-	113744576,113767074,113773614	113746595,113767208,113773683	0.833333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	46243250	46243313	46243286	-	RAMPAGE_only	4	4	21	1.114129	3.916127	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.952381
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	47067498	47067518	47067498	-	High_confidence	115	120	439	23.290601	5.783695	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.867882
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	149752641	149752683	149752661	-	High_confidence	8	14	55	2.917957	4.201660	chr3	149752625	149752732	LINE|L2|L2a	-	chr3	149738469	149752499	COMMD2|ENST00000473414.5	-	149738469,149750677,149751402,149752209,149752377	149741718,149750851,149751485,149752287,149752499	0.981818
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	65285119	65285132	65285131	+	RAMPAGE_only	4	4	9	0.477484	2.947703	chr14	65284944	65285417	LTR|ERVL-MaLR|MLT1C	+	chr14	65410591	65744121	FUT8|NM_178156.2	+	65410591,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65411993,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65744121	0.555556
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	18010632	18010657	18010656	+	RAMPAGE_only	2	3	9	0.477484	3.000000	chr8	18010700	18010985	SINE|Alu|AluSg	+	chr8	18013827	18027758	PCM1|ENST00000519802.5	+	18013827,18014583,18025360,18025543,18027636	18014036,18014840,18025453,18025658,18027758	0.555556
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	30971750	30971763	30971762	+	High_confidence	2	2	6	0.318323	2.584963	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	6590246	6590325	6590246	+	High_confidence	7	7	34	1.803828	4.499228	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.529412
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	23980496	23980509	23980508	-	High_confidence	6	6	25	1.326344	3.433270	chr22	23980449	23980597	SINE|MIR|MIRc	+	chr22	23971377	23980469	AC253536.7|ENST00000404092.5	-	23971377,23973767,23974306,23976875,23980411	23971623,23973943,23974439,23977067,23980469	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	39810033	39810094	39810033	-	High_confidence	25	25	88	4.668731	5.411332	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.613636
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	40363300	40363323	40363322	-	RAMPAGE_only	4	4	10	0.530538	3.121928	chr6	40362782	40364444	LINE|L1|L1MEc	+	chr6	40358743	40369474	AL139275.1|ENST00000447315.1	-	40358743,40369388	40359481,40369474	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	117454949	117454950	117454949	+	High_confidence	16	16	19	1.008021	3.169925	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.894737
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	168137486	168137507	168137486	-	High_confidence	4	4	12	0.636645	2.751629	chr1	168137391	168137473	LINE|L2|L2b	-	chr1	168085277	168137583	GPR161|ENST00000367835.1	-	168085277,168087584,168090563,168096507,168104476,168114455,168137164	168085796,168087704,168090668,168097232,168104894,168114549,168137583	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	102431241	102431250	102431247	-	High_confidence	11	13	37	1.962989	4.499598	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.918919
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	65431831	65431862	65431861	+	RAMPAGE_only	3	3	11	0.583591	3.277613	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	217842161	217842185	217842161	-	High_confidence	3	3	12	0.636645	2.918296	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.833333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	102450348	102450413	102450348	-	High_confidence	6	7	34	1.803828	4.594672	chr11	102450237	102450387	LTR|ERVL-MaLR|MLT1K	+	chr11	102396335	102450507	MSTRG.4421.2	-	102396335,102401538,102401915,102448811,102450156	102398891,102401692,102402206,102448868,102450507	0.970588
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	2726955	2726963	2726956	+	High_confidence	17	22	53	2.811849	4.343315	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.660377
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	81473724	81473758	81473724	-	RAMPAGE_only	5	5	24	1.273290	3.351953	chr5	81473245	81473683	LINE|L1|L1PA8	-	chr5	81419978	81448063	SSBP2|ENST00000510060.5	-	81419978,81428584,81437429,81440557,81442652,81446867,81447909	81420533,81428683,81437458,81440636,81442723,81446922,81448063	0.916667
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	59620043	59620081	59620043	+	High_confidence	4	5	25	1.326344	3.670969	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.760000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	148433428	148433431	148433428	+	RAMPAGE_only	3	3	6	0.318323	2.584963	chr1	148433382	148433731	LTR|ERV1|MER66-int	-	chr1	148442194	148448609	MSTRG.1479.1	+	148442194	148448609	0.500000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	11356881	11356893	11356892	+	High_confidence	4	4	10	0.530538	2.947703	chr19	11356842	11356927	SINE|MIR|MIRc	+	chr19	11357695	11359894	PLPPR2|ENST00000588196.1	+	11357695,11359531	11357739,11359894	0.700000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	16082035	16082046	16082035	+	High_confidence	3	4	8	0.424430	2.750000	chr19	16082077	16082207	SINE|MIR|MIRb	+	chr19	16081722	16093581	TPM4|ENST00000592138.5	+	16081722,16086422,16088026,16089044,16093535	16082046,16086540,16088097,16089120,16093581	0.750000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	49086520	49086559	49086558	+	High_confidence	5	5	14	0.742753	3.324863	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.857143
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	176617385	176617442	176617385	-	RAMPAGE_only	3	3	26	1.379398	3.483074	chr5	176617331	176617629	SINE|Alu|AluYm1	-	chr5	176595801	176610133	GPRIN1|ENST00000303991.4	-	176595801,176609998	176599877,176610133	0.961538
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	79631242	79631329	79631302	+	High_confidence	112	112	542	28.755139	6.345303	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.970480
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	69353531	69353582	69353531	+	RAMPAGE_only	8	8	39	2.069097	3.904010	chr12	69353494	69353787	SINE|Alu|AluY	-	chr12	69348353	69354233	LYZ|NM_000239.2	+	69348353,69350107,69352219,69353152	69348544,69350272,69352298,69354233	0.974359
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	95869912	95869937	95869936	+	RAMPAGE_only	4	5	17	0.901914	3.572469	chr7	95869931	95869979	LINE|L2|L2	-	chr7	95837617	96028321	DYNC1I1|ENST00000519371.1	+	95837617,95869882,95977511,95984814,95987055,95995947,96028174	95837649,95869998,95977601,95984977,95987155,95996073,96028321	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	74334972	74335069	74335026	-	RAMPAGE_only	6	6	29	1.538559	4.280395	chr11	74334907	74335067	SINE|Alu|AluJr4	-	chr11	74330417	74398408	MSTRG.4189.3	-	74330417,74333401,74338467,74342460,74342884,74343322,74345468,74346731,74347147,74351382,74368491,74370901,74371710,74374414,74398050	74333378,74336754,74338601,74342650,74343014,74343416,74345649,74346829,74347337,74351576,74368575,74370986,74371817,74374582,74398408	0.965517
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	58578102	58578133	58578102	-	High_confidence	6	6	17	0.901914	3.572469	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.705882
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	73567616	73567646	73567616	+	High_confidence	8	8	23	1.220237	3.653997	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.956522
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	99893444	99893484	99893471	-	High_confidence	10	10	35	1.856882	3.917626	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.971429
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	1655368	1655411	1655410	-	RAMPAGE_only	6	10	21	1.114129	3.558519	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	24968471	24968494	24968476	-	High_confidence	13	13	59	3.130172	5.061383	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24933005	24968453	TPTE2P1|ENST00000649209.1	-	24933005,24937576,24940506,24941986,24942931,24951396,24951594,24961748,24967391,24968205	24934663,24937770,24940785,24942108,24943021,24951488,24951770,24961849,24967453,24968453	0.525424
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	24368595	24368611	24368595	-	RAMPAGE_only	4	4	8	0.424430	2.500000	chr12	24368549	24368674	LINE|L2|L2b	+	chr12	23845998	24357430	SOX5|ENST00000536729.2	-	23845998,23895897,24213342,24277215,24357337	23846193,23896024,24213417,24277312,24357430	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	48868595	48868617	48868613	-	High_confidence	187	212	816	43.291869	7.244719	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.991422
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	52570267	52570293	52570288	+	RAMPAGE_only	3	3	13	0.689699	2.855389	chr13	52569964	52570306	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.538462
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	42887495	42887522	42887495	+	RAMPAGE_only	1	1	6	0.318323	2.584963	chr6	42887300	42887595	SINE|Alu|AluSp	+	chr6	42879681	42889925	RPL7L1|ENST00000304734.9	+	42879681,42880860,42883450,42884612,42885973,42886255,42887159	42879951,42880966,42883614,42884750,42886083,42886470,42889925	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73824992	73825096	73825034	-	RAMPAGE_only	9	9	43	2.281312	4.204834	chrX	73825002	73825055	SINE|MIR|MIRc	-	chrX	73823336	73829691	XIST|ENST00000649757.1	-	73823336,73829067	73827984,73829691	0.976744
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	152460676	152460677	152460676	-	RAMPAGE_only	8	8	11	0.583591	2.646439	chr7	152460557	152460804	LINE|L2|L2a	-	chr7	152134924	152436005	KMT2C|ENST00000558084.5	-	152134924,152138795,152139185,152139674,152144712,152145152,152146598,152148032,152150899,152151441,152152704,152154009,152154266,152155909,152156204,152158862,152162116,152167145,152169185,152171263,152174130,152176190,152179833,152180710,152182973,152185557,152187261,152187714,152194008,152194228,152194439,152195906,152199278,152202933,152205105,152207299,152220522,152222000,152222572,152224014,152224434,152229922,152230219,152235816,152238706,152247901,152249875,152250852,152251938,152252545,152263015,152265037,152273704,152309965,152311797,152315137,152330600,152358586,152435625	152136924,152138904,152139259,152139791,152144881,152145295,152146735,152149152,152151007,152151581,152152954,152154146,152154445,152156057,152156346,152159072,152163826,152167378,152169249,152171342,152174242,152178010,152180126,152182594,152183156,152185631,152187476,152187847,152194128,152194261,152194568,152196011,152199459,152203064,152205225,152207428,152220735,152222066,152222682,152224179,152224616,152230027,152230321,152235933,152238826,152248620,152249953,152250966,152252090,152252715,152263130,152265209,152273867,152310075,152311946,152315338,152330739,152358675,152436005	0.727273
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	143228011	143228038	143228037	+	RAMPAGE_only	11	11	26	1.379398	4.022055	chr2	143227673	143228117	LINE|L1|L1ME4a	-	chr2	143129329	143768352	ARHGAP15|NM_018460.3	+	143129329,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.769231
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	45833309	45833327	45833309	-	High_confidence	3	5	18	0.954968	2.927451	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	4801035	4801047	4801035	-	RAMPAGE_only	2	2	7	0.371376	2.521641	chr20	4800953	4801009	DNA|hAT-Ac|OldhAT1	-	chr20	4780022	4795504	RASSF2|ENST00000478553.1	-	4780022,4786230,4787632,4788216,4789595,4790450,4792538,4792993,4795255	4784342,4786328,4787701,4788268,4789697,4790611,4792627,4793054,4795504	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	571752	571774	571752	-	High_confidence	5	5	19	1.008021	2.546632	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.842105
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	91418843	91418869	91418843	-	RAMPAGE_only	2	2	7	0.371376	2.584963	chrX	91418756	91418870	DNA|hAT-Blackjack|MER81	+	chrX	91414877	91434999	PABPC5-AS1|ENST00000456187.1	-	91414877,91418324,91418783,91434902	91415049,91418393,91418871,91434999	0.857143
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	46087042	46087065	46087042	-	High_confidence	6	6	13	0.689699	3.026987	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.846154
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	45720873	45720910	45720909	+	RAMPAGE_only	4	4	20	1.061075	3.616349	chr7	45720791	45721042	SINE|MIR|MIRb	-	chr7	45574525	45723116	ADCY1|NM_021116.2	+	45574525,45592758,45610378,45622631,45648669,45657726,45660041,45662058,45677868,45678165,45679708,45684978,45685961,45686546,45703375,45703599,45704517,45708349,45710527,45713692	45575182,45592908,45610497,45622743,45648797,45657885,45660183,45662214,45678063,45678263,45679793,45685068,45686215,45686673,45703492,45703746,45704616,45708464,45710652,45723116	0.950000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	168093050	168093056	168093055	-	High_confidence	19	20	31	1.644667	3.045385	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.838710
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	7137061	7137101	7137097	+	RAMPAGE_only	7	7	38	2.016043	4.240963	chr12	7137127	7137213	SINE|MIR|MIR1_Amn	+	chr12	7138681	7143198	CLSTN3|ENST00000544584.1	+	7138681,7141241,7142085,7142868,7143162	7138816,7141404,7142139,7143026,7143198	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	81664306	81664344	81664306	+	RAMPAGE_only	5	5	19	1.008021	3.350209	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.894737
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	21140975	21141008	21140996	-	High_confidence	6	6	17	0.901914	3.734522	chr6	21140775	21141127	LTR|ERVL-MaLR|THE1A	-	chr6	21134287	21140969	MSTRG.19915.1	-	21134287,21139661,21140851	21138976,21139847,21140969	0.705882
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	166850054	166850062	166850054	+	RAMPAGE_only	3	3	8	0.424430	2.500000	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	153337000	153337126	153337068	+	RAMPAGE_only	6	10	55	2.917957	4.805180	chr4	153336971	153337087	LINE|L2|L2a	-	chr4	153204465	153339320	TRIM2|ENST00000338700.9	+	153204465,153270334,153275892,153292981,153294304,153295312,153315484,153315831,153322647,153324077,153328529,153334813	153204560,153270519,153276130,153293133,153294485,153296036,153315588,153315999,153322816,153324148,153328670,153339320	0.981818
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	132285530	132285551	132285530	-	High_confidence	3	5	14	0.742753	2.645593	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.785714
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	110936582	110936585	110936584	+	High_confidence	12	20	22	1.167183	3.521928	chr12	110936431	110936780	LTR|ERVL-MaLR|THE1D	+	chr12	110936601	110937451	LINC01405|ENST00000331096.2	+	110936601,110937184	110936698,110937451	0.863636
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	13419666	13419690	13419689	-	RAMPAGE_only	4	4	11	0.583591	3.277613	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.909091
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	117877355	117877417	117877416	-	High_confidence	9	9	27	1.432452	3.606015	chr11	117877415	117877598	SINE|MIR|MIRb	+	chr11	117838234	117877430	FXYD6|ENST00000524841.5	-	117838234,117839780,117840236,117841147,117841790,117841989,117842718,117877298	117838277,117839830,117840368,117841184,117841865,117842028,117842781,117877430	0.518519
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	16550628	16550775	16550628	-	RAMPAGE_only	24	25	100	5.305376	3.307424	chr12	16550559	16550636	DNA?|DNA?|MER131	-	chr12	16548372	16600860	LMO3|ENST00000616247.4	-	16548372,16560412,16600713,16600722	16551327,16560538,16600721,16600860	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	94683450	94683499	94683483	+	High_confidence	12	12	26	1.379398	4.163856	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_000772.2	+	94683493,94687769,94688124,94694916,94706783,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94706960,94720537,94724533,94733438,94736190	0.923077
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	57568212	57568235	57568212	-	High_confidence	5	5	11	0.583591	2.913977	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	0.909091
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	155869835	155869861	155869860	+	RAMPAGE_only	3	3	11	0.583591	2.663533	chr1	155869840	155870033	SINE|MIR|MIR	+	chr1	155859512	155885199	MSTRG.1632.2	+	155859512,155867964,155880499,155881197	155859795,155868791,155880620,155885199	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	50271485	50271488	50271485	+	High_confidence	29	29	48	2.546581	3.509485	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	9965320	9965321	9965320	+	RAMPAGE_only	8	8	8	0.424430	2.500000	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.875000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	66729219	66729303	66729279	-	High_confidence	34	36	274	14.536731	5.498086	chr11	66729233	66729349	SINE|MIR|MIRb	-	chr11	66715353	66729226	SPTBN2|ENST00000527010.1	-	66715353,66715829,66721083,66728740	66715395,66715981,66721262,66729226	0.974453
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	60912729	60912750	60912749	+	RAMPAGE_only	3	3	8	0.424430	3.000000	chr11	60912641	60913600	LTR|ERV1|LTR1D	-	chr11	60913873	60923443	TMEM109|ENST00000227525.7	+	60913873,60919685,60920885,60921773	60914268,60919930,60920988,60923443	0.750000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	9688766	9688824	9688768	-	RAMPAGE_only	31	43	141	7.480580	5.780410	chr10	9688400	9688943	LTR|ERVL-MaLR|MLT1G1	-	chr10	9425419	9459177	MSTRG.2406.1	-	9425419,9456421,9458801	9425616,9456532,9459177	0.503546
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	134485414	134485482	134485470	-	High_confidence	19	19	134	7.109204	5.768886	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.917910
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	39026110	39026178	39026130	+	High_confidence	6	8	42	2.228258	4.222808	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	147831828	147831842	147831828	-	High_confidence	5	5	13	0.689699	3.026987	chr5	147831826	147831957	SINE|MIR|MIR3	+	chr5	147824567	147831786	SPINK1|ENST00000296695.9	-	147824567,147828021,147829598,147831522	147824706,147828128,147829630,147831786	0.923077
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	54243235	54243245	54243244	-	RAMPAGE_only	3	3	9	0.477484	2.750000	chr1	54243091	54243229	SINE|MIR|MIR3	-	chr1	54226516	54228834	SSBP3|ENST00000528930.5	-	54226516,54228254,54228448,54228747	54227160,54228356,54228477,54228834	0.777778
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	39800293	39800305	39800304	-	High_confidence	5	5	11	0.583591	2.646439	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.727273
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	86453161	86453207	86453184	-	High_confidence	15	19	100	5.305376	4.454381	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016014	86453185	MAPK10|ENST00000641634.1	-	86016014,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194318,86354529,86429677,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86429805,86453185	0.830000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	139344535	139344548	139344537	+	High_confidence	17	28	66	3.501548	4.544597	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.954545
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	20423701	20423720	20423703	-	RAMPAGE_only	13	17	34	1.803828	4.453189	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.558824
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	41982028	41982102	41982101	-	RAMPAGE_only	6	6	31	1.644667	3.312459	chr19	41982026	41982072	LINE|CR1|L3	-	chr19	41966581	41993467	ATP1A3|NM_001256213.1	-	41966581,41967248,41967661,41968784,41969434,41970184,41970387,41975628,41976415,41977935,41978150,41978605,41981501,41981721,41981907,41984917,41985305,41985863,41986115,41987935,41988317,41988475,41993392	41966965,41967340,41967763,41968915,41969580,41970308,41970542,41975797,41976566,41978072,41978326,41978798,41981636,41981831,41982106,41985186,41985423,41985998,41986229,41988139,41988377,41988562,41993467	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	143026456	143026485	143026456	+	RAMPAGE_only	15	17	50	2.652688	4.163820	chr2	143026366	143026854	LTR|ERV1|LTR1D	-	chr2	142877663	143042172	KYNU|ENST00000409512.5	+	142877663,142881344,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142877736,142881430,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143042172	0.640000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	91179462	91179549	91179462	-	High_confidence	185	189	780	41.381934	7.090219	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.893590
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	46530324	46530371	46530344	-	RAMPAGE_only	15	15	59	3.130172	4.913808	chr19	46530185	46530438	LINE|L2|L2b	+	chr19	46481009	46496498	MSTRG.12541.2	-	46481009,46493165	46481440,46496498	0.542373
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	25319898	25319921	25319898	-	RAMPAGE_only	3	4	8	0.424430	2.500000	chr20	25319592	25319927	LTR|ERV1|LTR65	+	chr20	25306832	25310472	ABHD12|ENST00000481556.1	-	25306832,25307965,25308456,25309445,25310199	25306915,25308045,25308494,25309575,25310472	0.750000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	32403148	32403205	32403148	-	RAMPAGE_only	34	36	74	3.925978	4.823706	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	15798658	15798665	15798664	-	RAMPAGE_only	12	14	20	1.061075	3.576618	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.800000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	73144770	73144771	73144770	-	RAMPAGE_only	8	8	11	0.583591	2.845351	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	20372698	20372703	20372698	-	High_confidence	2	2	7	0.371376	2.807355	chr22	20372309	20373771	LINE|L1|L1M3de	+	chr22	20350577	20372696	USP41|ENST00000486536.6	-	20350577,20363624,20364185,20366566,20367547,20369428,20370119,20372535	20350931,20363674,20364317,20366734,20367643,20369575,20370199,20372696	0.714286
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	99471746	99471766	99471765	-	RAMPAGE_only	10	10	32	1.697720	3.913401	chr7	99471609	99471877	SINE|Alu|AluSx1	+	chr7	99458194	99466331	ATP5MF|ENST00000292475.7	-	99458194,99459146,99460085,99466110	99458355,99459263,99460193,99466331	0.656250
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	61952970	61953006	61952970	-	RAMPAGE_only	3	3	14	0.742753	2.565448	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.928571
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	54759973	54759974	54759973	-	High_confidence	19	19	19	1.008021	2.925853	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	7946878	7946898	7946878	+	High_confidence	47	47	132	7.003096	5.267623	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.863636
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	184537517	184537567	184537566	-	High_confidence	9	9	44	2.334365	4.833014	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.500000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	229232040	229232054	229232053	-	High_confidence	6	6	14	0.742753	3.026987	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.857143
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	47998234	47998271	47998261	+	RAMPAGE_only	7	7	26	1.379398	3.639080	chr8	47995253	47998768	LTR|ERV1|HERVFH21-int	-	chr8	48008399	48064708	UBE2V2|ENST00000523111.6	+	48008399,48043032,48049852,48060681	48008470,48043181,48049978,48064708	0.884615
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	69425664	69425700	69425691	+	High_confidence	9	13	38	2.016043	3.995907	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425689	69429621	AP000439.3|ENST00000545202.1	+	69425689,69427362	69425806,69429621	0.947368
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	176162936	176162937	176162936	-	RAMPAGE_only	4	4	7	0.371376	2.584963	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.714286
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	65431730	65431780	65431761	+	RAMPAGE_only	5	5	22	1.167183	3.653757	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.954545
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	12800915	12800954	12800953	-	High_confidence	6	6	18	0.954968	3.454822	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.944444
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	61259719	61259738	61259719	-	RAMPAGE_only	2	2	8	0.424430	2.521641	chr2	61259391	61259685	SINE|Alu|AluSz	-	chr2	61189276	61256886	USP34|ENST00000463046.5	-	61189276,61190517,61192900,61203139,61204255,61204496,61206016,61206759,61211771,61220309,61221501,61222618,61223059,61223247,61227066,61228644,61228826,61229547,61232451,61235844,61236025,61241559,61241765,61245209,61246323,61248510,61256383,61256872	61190414,61190658,61192980,61203263,61204380,61204601,61206124,61208977,61211929,61220457,61221606,61222663,61223164,61223296,61227218,61228719,61228995,61229633,61232532,61235910,61236389,61241655,61241819,61245288,61246477,61248683,61256478,61256886	0.750000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	88635654	88635661	88635654	+	High_confidence	4	4	11	0.583591	2.663533	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.818182
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	202551797	202551828	202551797	+	RAMPAGE_only	5	5	12	0.636645	2.732159	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202558617	202567827	PPP1R12B|ENST00000367269.2	+	202558617,202562777,202564442,202567777	202558893,202562922,202564547,202567827	0.583333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	57571331	57571383	57571331	+	RAMPAGE_only	3	5	15	0.795806	2.807355	chr12	57571268	57571350	LINE|Penelope|Penelope1_Vert	-	chr12	57550063	57584771	KIF5A|NM_004984.2	+	57550063,57563438,57563619,57564107,57564459,57564917,57567125,57567493,57568962,57569255,57569534,57569986,57571320,57572060,57572579,57575083,57575639,57576086,57576268,57576760,57577712,57578008,57578237,57580955,57581414,57581869,57582601,57583100,57584217	57550400,57563526,57563693,57564212,57564508,57564973,57567213,57567618,57569067,57569404,57569683,57570162,57571389,57572267,57572726,57575272,57575757,57576151,57576378,57576862,57577773,57578080,57578342,57581172,57581568,57581952,57582629,57583215,57584771	0.933333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	4143199	4143218	4143199	+	High_confidence	111	114	273	14.483677	5.484175	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.978022
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	18793975	18793984	18793975	-	High_confidence	2	2	8	0.424430	2.521641	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18787970	18793982	LINC00652|NR_026884.1	-	18787970,18789573,18793664	18788898,18789709,18793982	0.500000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	20658568	20658608	20658568	+	High_confidence	5	5	24	1.273290	3.568084	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.708333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	34244804	34244816	34244815	-	High_confidence	6	10	17	0.901914	3.250000	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244796	MSTRG.18632.2	-	34175821,34179012,34182679,34200820,34218294,34239374,34244615	34175957,34179097,34182867,34200921,34218450,34239448,34244796	0.882353
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	49867874	49867909	49867908	-	High_confidence	4	4	18	0.954968	3.683542	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49863965	49867909	PNKP|ENST00000599543.3	-	49863965,49864178,49864323,49865126,49866398,49867053,49867678	49864071,49864236,49864403,49865426,49866445,49867217,49867909	0.944444
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	132789854	132789856	132789854	-	RAMPAGE_only	3	5	8	0.424430	2.521641	chr9	132789646	132790007	LTR|ERVL-MaLR|MLT1E2	-	chr9	132725582	132727598	AK8|ENST00000467161.1	-	132725582,132727453	132725925,132727598	0.875000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	57746128	57746129	57746128	+	High_confidence	19	19	19	1.008021	3.326360	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	71745881	71745936	71745886	+	High_confidence	10	10	53	2.811849	4.442280	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.849057
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	48662922	48662935	48662934	+	RAMPAGE_only	11	11	23	1.220237	3.653997	chr18	48662701	48663071	LINE|L1|L1ME3A	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	0.695652
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	3062922	3062983	3062922	-	High_confidence	40	48	99	5.252322	5.384815	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.959596
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	11193345	11193367	11193345	+	High_confidence	6	6	24	1.273290	3.827910	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.500000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	21001521	21001610	21001609	-	RAMPAGE_only	34	35	89	4.721785	5.042890	chr17	21001557	21001631	DNA|hAT-Charlie|MER58C	+	chr17	20999592	21043039	USP22|ENST00000261497.8	-	20999592,21004201,21004927,21006895,21007869,21011150,21012829,21015751,21017941,21019083,21021112,21028541,21042664	21003073,21004351,21004990,21006987,21007996,21011309,21012935,21015899,21018111,21019185,21021226,21028674,21043039	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	95208482	95208483	95208482	+	RAMPAGE_only	7	7	10	0.530538	2.846439	chr1	95208181	95208611	LINE|L1|L1ME3A	+	chr1	95234154	95247225	RWDD3|NM_015485.4	+	95234154,95244210,95246541,95246755	95234315,95244698,95246657,95247225	0.900000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	110440313	110440338	110440319	-	RAMPAGE_only	6	7	20	1.061075	3.826875	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.950000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	170089510	170089544	170089514	-	High_confidence	4	4	18	0.954968	3.683542	chr4	170089443	170089514	LINE|L2|L2b	+	chr4	170070618	170089394	AADAT|ENST00000510340.5	-	170070618,170073135,170078508,170087115,170088395,170089260	170070652,170073345,170078583,170087248,170088564,170089394	0.833333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	18149851	18149869	18149863	+	High_confidence	5	5	15	0.795806	2.842371	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.800000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	133089637	133089694	133089677	+	RAMPAGE_only	10	12	27	1.432452	4.208410	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	21140934	21140937	21140935	-	High_confidence	26	63	66	3.501548	5.217370	chr6	21140775	21141127	LTR|ERVL-MaLR|THE1A	-	chr6	21134287	21140969	MSTRG.19915.1	-	21134287,21139661,21140851	21138976,21139847,21140969	0.833333
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	16712878	16712959	16712879	-	High_confidence	22	33	126	6.684774	5.362428	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.952381
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	102083125	102083294	102083189	-	RAMPAGE_only	11	11	127	6.737828	5.860072	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.992126
temporal_lobe_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	27331602	27331787	27331602	+	High_confidence	41	41	397	21.062343	6.220254	chr22	27331341	27331854	LTR|ERVL|LTR33	-	chr22	27331786	27379265	AL020994.2|ENST00000413244.1	+	27331786,27335157,27336096,27379185	27331938,27335330,27336262,27379265	0.853904
testis_male_adult_37_years	chr2	173021490	173021532	173021512	+	RAMPAGE_only	10	10	41	1.832532	4.821928	chr2	173021442	173021610	SINE|Alu|AluYh3	+	chr2	173026625	173036795	RAPGEF4|ENST00000397085.3	+	173026625,173027080,173030163,173033913,173036124,173036627	173026697,173027259,173030254,173033964,173036212,173036795	0.682927
testis_male_adult_37_years	chr1	36082339	36082350	36082349	-	RAMPAGE_only	11	12	21	0.938614	4.201841	chr1	36082306	36082489	SINE|MIR|MIR	+	chr1	36080065	36084026	AL138787.1|ENST00000446354.2	-	36080065,36082225,36083975	36081511,36082402,36084026	0.857143
testis_male_adult_37_years	chr4	162022725	162022749	162022748	+	High_confidence	6	6	18	0.804526	4.058814	chr4	162022778	162023083	LINE|L1|L1PB4	+	chr4	162022732	162047567	AC023136.1|ENST00000513093.1	+	162022732,162032577,162035209,162041853,162043182,162047372	162022909,162032753,162035399,162042091,162043311,162047567	0.500000
testis_male_adult_37_years	chr11	131083405	131083439	131083438	-	High_confidence	6	6	16	0.715134	3.625000	chr11	131082162	131083630	LINE|L1|L1MEf	-	chr11	131078966	131083471	STRG.196194.1	-	131078966,131083383	131079874,131083471	0.937500
testis_male_adult_37_years	chr12	9567394	9567395	9567394	+	RAMPAGE_only	8	9	10	0.446959	2.725481	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9563963	9633828	AC092821.3|ENST00000642112.1	+	9563963,9567489,9569057,9570762,9571460,9573002,9573465,9584105,9606352,9607670,9617243,9622318,9633424	9565303,9567567,9569202,9570892,9571573,9573093,9573534,9584164,9606456,9607802,9617351,9622436,9633828	0.700000
testis_male_adult_37_years	chr12	62305792	62305819	62305792	+	High_confidence	2	2	8	0.357567	2.750000	chr12	62305734	62306281	LTR|ERVL-MaLR|MLT1F	+	chr12	62305594	62325933	USP15|ENST00000546694.1	+	62305594,62314789,62321463,62325871	62306058,62314916,62321609,62325933	0.500000
testis_male_adult_37_years	chr22	23625650	23625671	23625670	-	RAMPAGE_only	6	7	15	0.670438	3.378783	chr22	23625342	23625934	LTR|ERV1|LTR71B	+	chr22	23613286	23632023	DRICH1|ENST00000614553.1	-	23613286,23613638,23614134,23616852,23617574,23619363,23620593,23622090,23624882,23625980,23631815	23613330,23613660,23614214,23616874,23617657,23619393,23620615,23622176,23624904,23626048,23632023	0.800000
testis_male_adult_37_years	chr20	14929504	14929518	14929504	-	High_confidence	144	144	309	13.811031	6.314548	chr20	14929081	14929880	LTR|ERVL|MER21C	-	chr20	14884249	14929514	STRG.273923.1	-	14884249,14929374	14884594,14929514	0.792880
testis_male_adult_37_years	chr16	89958287	89958317	89958292	+	High_confidence	5	5	15	0.670438	3.506891	chr16	89958222	89958381	LTR|ERVL-MaLR|MLT1K	-	chr16	89958350	89959365	DEF8|ENST00000562044.1	+	89958350,89959013	89958533,89959365	0.866667
testis_male_adult_37_years	chr12	103151833	103151834	103151833	+	High_confidence	50	50	65	2.905233	4.909763	chr12	103151758	103152353	LTR|ERVL-MaLR|MLT1E3	+	chr12	103151841	103168309	LOC101929058|NR_126333.1	+	103151841,103156098,103159458,103162715,103164402,103164690,103168037	103151918,103156208,103159583,103162950,103164437,103164763,103168309	0.661538
testis_male_adult_37_years	chr18	61047919	61047920	61047919	+	High_confidence	29	29	34	1.519660	4.536670	chr18	61047571	61048112	LTR|ERV1|LTR12F	+	chr18	61047857	61048708	STRG.263040.1	+	61047857	61048708	0.735294
testis_male_adult_37_years	chr8	42787585	42787586	42787585	+	High_confidence	41	41	47	2.100707	4.204828	chr8	42786593	42787999	LTR|ERV1|LTR12C	+	chr8	42787538	42788224	STRG.146063.1	+	42787538	42788224	0.936170
testis_male_adult_37_years	chr14	51717254	51717271	51717261	+	High_confidence	10	10	29	1.296181	4.664498	chr14	51717168	51717565	LTR|ERVL-MaLR|MSTD	-	chr14	51717254	51728769	FRMD6|ENST00000553556.2	+	51717254,51720054,51721948,51725778,51727744	51717348,51720390,51722080,51725870,51728769	0.758621
testis_male_adult_37_years	chr14	38948236	38948246	38948245	-	High_confidence	19	19	48	2.145403	4.869035	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	0.916667
testis_male_adult_37_years	chr16	15006394	15006427	15006394	+	RAMPAGE_only	14	17	32	1.430269	4.413716	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.562500
testis_male_adult_37_years	chr7	154061137	154061138	154061137	-	RAMPAGE_only	16	16	16	0.715134	3.577820	chr7	154060973	154061571	LTR|ERV1|HERVE-int	+	chr7	154055584	154063412	STRG.141231.1	-	154055584,154057432,154058660	154055925,154057533,154063412	1.000000
testis_male_adult_37_years	chr14	70223764	70223806	70223797	+	RAMPAGE_only	36	36	128	5.721074	6.538910	chr14	70223543	70223937	LTR|ERV1|MER61B	-	chr14	70192318	70232426	STRG.228181.1	+	70192318,70223561,70223750,70227571	70192521,70223671,70223848,70232426	0.671875
testis_male_adult_37_years	chr13	109269011	109269055	109269011	-	High_confidence	20	20	58	2.592362	4.871997	chr13	109265521	109269052	LTR|ERV1|HERVH-int	+	chr13	109268778	109269046	STRG.220997.1	-	109268778	109269046	0.637931
testis_male_adult_37_years	chr3	47999128	47999129	47999128	-	RAMPAGE_only	9	9	9	0.402263	2.947703	chr3	47999006	47999081	SINE|MIR|MIR3	-	chr3	47973083	48016412	MAP4|ENST00000434267.5	-	47973083,47977864,47998637,48016333	47975465,47977933,47998879,48016412	0.555556
testis_male_adult_37_years	chr8	57210696	57210717	57210716	+	RAMPAGE_only	3	3	10	0.446959	3.321928	chr8	57210497	57210965	LTR|ERV1|MER50	-	chr8	57193593	57219442	STRG.147096.2	+	57193593,57193884,57194300,57210733,57212387,57212877,57217777,57218269	57193689,57194011,57206354,57212315,57212583,57214272,57217976,57219442	1.000000
testis_male_adult_37_years	chr1	147517496	147517519	147517517	-	High_confidence	2	4	9	0.402263	3.000000	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147258884	147517875	LINC00624|ENST00000619867.4	-	147258884,147384667,147408589,147514337,147515520,147517442	147260976,147384863,147408689,147514448,147515676,147517875	0.666667
testis_male_adult_37_years	chr6	150115479	150115480	150115479	-	High_confidence	221	221	224	10.011880	6.004261	chr6	150115167	150116186	LTR|ERV1|LTR12D	-	chr6	150114022	150115469	STRG.122991.1	-	150114022	150115469	0.982143
testis_male_adult_37_years	chr7	111413967	111413995	111413976	-	RAMPAGE_only	29	30	187	8.358132	6.131984	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	110878780	111415857	STRG.136096.6	-	110878780,110963499,111391837	110886695,110963565,111415857	0.850267
testis_male_adult_37_years	chr7	107580442	107580476	107580458	+	High_confidence	102	103	357	15.956433	6.343296	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.899160
testis_male_adult_37_years	chr3	10629036	10629076	10629036	-	RAMPAGE_only	2	2	10	0.446959	3.321928	chr3	10628757	10629438	DNA|TcMar-Tigger|Tigger17a	-	chr3	10626014	10626807	ATP2B2-IT2|NR_046766.1	-	10626014,10626765	10626485,10626807	0.500000
testis_male_adult_37_years	chr7	137268239	137268266	137268243	-	High_confidence	4	4	15	0.670438	3.378783	chr7	137267941	137268351	LTR|ERV1|HERVE_a-int	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.933333
testis_male_adult_37_years	chr14	49636356	49636359	49636356	-	RAMPAGE_only	6	6	13	0.581047	2.931209	chr14	49636036	49636340	SINE|Alu|AluSx1	-	chr14	49625173	49635230	DNAAF2|NM_018139.2	-	49625173,49628011,49633286	49626048,49628155,49635230	0.769231
testis_male_adult_37_years	chr7	101349485	101349486	101349485	+	High_confidence	479	489	528	23.599431	5.361854	chr7	101348393	101349869	LTR|ERV1|LTR12C	+	chr7	101349496	101350161	STRG.135517.1	+	101349496	101350161	0.958333
testis_male_adult_37_years	chr22	24256797	24256798	24256797	+	RAMPAGE_only	7	7	7	0.312871	2.807355	chr22	24256728	24256802	LINE|L1|L1M3e	+	chr22	24248940	24265525	STRG.284139.2	+	24248940,24251517,24257996,24258766,24260907,24261692,24263499	24249349,24257710,24258059,24258873,24261036,24262607,24265525	1.000000
testis_male_adult_37_years	chrX	105115634	105115681	105115662	+	High_confidence	2	3	10	0.446959	2.725481	chrX	105115024	105116272	LTR|ERV1|LTR12C	-	chrX	105115662	105116279	STRG.294779.1	+	105115662	105116279	0.600000
testis_male_adult_37_years	chr15	82713995	82714024	82714006	-	High_confidence	5	5	23	1.028006	4.186704	chr15	82713915	82714076	SINE|MIR|MIRc	+	chr15	82710470	82713993	LOC338963|NR_034139.1	-	82710470,82711186,82711560,82713729	82710575,82711432,82712307,82713993	0.739130
testis_male_adult_37_years	chr12	118871451	118871459	118871451	+	High_confidence	18	20	36	1.609052	4.432620	chr12	118871156	118871633	LINE|L1|L1ME1	+	chr12	118871367	118900198	STRG.210038.2	+	118871367,118875450,118899325,118900119	118871499,118875584,118899471,118900198	0.527778
testis_male_adult_37_years	chr9	104763724	104763741	104763726	+	High_confidence	2	3	8	0.357567	3.000000	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	1.000000
testis_male_adult_37_years	chr7	152515682	152515683	152515682	-	High_confidence	133	134	140	6.257425	5.252767	chr7	152515329	152515917	LTR|ERV1|LTR12_	-	chr7	152513636	152515697	STRG.141068.1	-	152513636	152515697	0.950000
testis_male_adult_37_years	chr10	17891535	17891564	17891563	+	RAMPAGE_only	8	8	20	0.893918	3.892407	chr10	17891463	17891627	DNA|hAT-Charlie|MER1A	+	chr10	17822345	17911170	STRG.171206.2	+	17822345,17827541,17833674,17840692,17845288,17849578,17852966,17856241,17863533,17866561,17870245,17870847,17871981,17873783,17875089,17877899,17879720,17880524,17881066,17885268,17894209,17898033,17900787,17901972,17906885,17907533,17909305,17910214	17823475,17827715,17833839,17840806,17845435,17849764,17853124,17861502,17863682,17866761,17870373,17870935,17872126,17873825,17875253,17877967,17879821,17880670,17881181,17885435,17894312,17898266,17900953,17902122,17906999,17907698,17909347,17911170	0.900000
testis_male_adult_37_years	chr15	26045316	26045317	26045316	-	High_confidence	14	14	18	0.804526	3.683542	chr15	26044935	26045577	LTR|ERV1|LTR12_	-	chr15	26044515	26045303	STRG.232248.1	-	26044515	26045303	0.888889
testis_male_adult_37_years	chr12	109389396	109389427	109389396	+	High_confidence	2	3	10	0.446959	2.947703	chr12	109388999	109389538	LTR|ERVL-MaLR|MLT1K	-	chr12	109388718	109448371	MYO1H|ENST00000431443.6	+	109388718,109393330,109396383,109397731,109401092,109403981,109405921,109406788,109407793,109409556,109409962,109410687,109411893,109415525,109420980,109424747,109425945,109427468,109432896,109435036,109436487,109438535,109439630,109440743,109441614,109442216,109443513,109444212,109444431,109445512,109447158	109388844,109393446,109396582,109397812,109401272,109404080,109406035,109406860,109407913,109409624,109410068,109410768,109411985,109415620,109421027,109424828,109426051,109427586,109433010,109435113,109436556,109438620,109439790,109440827,109441708,109442272,109443649,109444283,109444529,109445612,109448371	0.800000
testis_male_adult_37_years	chr1	240763381	240763382	240763381	+	High_confidence	43	43	45	2.011315	4.618012	chr1	240762307	240763695	LTR|ERV1|LTR12C	+	chr1	240763381	240776044	AL365184.1|ENST00000644500.1	+	240763381,240765437,240768151,240770765,240771082,240774525,240775804	240763862,240765599,240768304,240770902,240771183,240774600,240776044	0.955556
testis_male_adult_37_years	chr6	28922712	28922716	28922715	+	High_confidence	5	5	12	0.536351	3.459432	chr6	28922703	28922737	SINE|MIR|MIRc	-	chr6	28922691	28923278	STRG.110727.1	+	28922691	28923278	0.750000
testis_male_adult_37_years	chr16	20989114	20989115	20989114	-	High_confidence	720	722	776	34.684012	5.783377	chr16	20988699	20990207	LTR|ERV1|LTR12C	-	chr16	20986183	20989126	STRG.244087.9	-	20986183,20987692,20987941	20987448,20987849,20989126	0.966495
testis_male_adult_37_years	chr7	12588912	12588940	12588912	+	High_confidence	4	4	14	0.625742	3.334679	chr7	12588873	12589215	LTR|ERV1|HERVFH21-int	-	chr7	12588927	12625052	SCIN|ENST00000523729.5	+	12588927,12596269,12604513,12622800,12625009	12589069,12596426,12604663,12622893,12625052	0.857143
testis_male_adult_37_years	chr3	79328873	79328906	79328905	+	RAMPAGE_only	19	20	31	1.385573	4.185230	chr3	79328634	79328941	LINE|L1|L1PB2	-	chr3	79411726	79435227	LOC101927374|NR_110133.1	+	79411726,79428607,79433409	79412034,79428735,79435227	0.709677
testis_male_adult_37_years	chr2	177476670	177476702	177476701	+	RAMPAGE_only	13	13	27	1.206789	4.356558	chr2	177475927	177477423	LINE|L1|L1MB7	-	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	1.000000
testis_male_adult_37_years	chr11	11963557	11963885	11963884	-	RAMPAGE_only	40	40	543	24.269869	6.236208	chr11	11963694	11963925	SINE|MIR|MIRc	+	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.990792
testis_male_adult_37_years	chr22	23536877	23536878	23536877	+	High_confidence	9	9	11	0.491655	3.121928	chr22	23536061	23537026	LTR|ERVK|LTR5_Hs	+	chr22	23536880	23539480	PCAT14|ENST00000629869.1	+	23536880,23538760	23537136,23539480	0.727273
testis_male_adult_37_years	chr1	239408066	239408088	239408066	+	High_confidence	4	4	11	0.491655	3.095795	chr1	239407991	239408310	LTR|ERVL-MaLR|THE1C	+	chr1	239407971	239636058	STRG.21477.2	+	239407971,239492708,239545640,239632223,239635940	239408249,239492807,239545749,239632286,239636058	0.727273
testis_male_adult_37_years	chr5	109383422	109383463	109383446	-	High_confidence	12	12	35	1.564356	4.138502	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.942857
testis_male_adult_37_years	chr15	24558156	24558201	24558200	+	High_confidence	73	77	221	9.877792	6.965506	chr15	24558078	24558472	LTR|ERV1|PABL_B-int	-	chr15	24558156	24587780	PWRN1|NR_026646.1	+	24558156,24566655,24567896,24569782,24570031,24574509,24574906,24580226,24587566	24558321,24566800,24568182,24569809,24570128,24574813,24575003,24580330,24587780	0.782805
testis_male_adult_37_years	chr8	28532519	28532539	28532538	+	RAMPAGE_only	7	8	15	0.670438	3.589898	chr8	28532436	28532712	SINE|Alu|AluJr4	-	chr8	28494255	28574268	FZD3|ENST00000240093.7	+	28494255,28499932,28502669,28520637,28527146,28551602,28555737,28562797	28494343,28499978,28503202,28520834,28528164,28551751,28555971,28574268	0.533333
testis_male_adult_37_years	chr7	150038524	150038561	150038560	+	RAMPAGE_only	22	24	34	1.519660	4.381580	chr7	150038140	150038716	LTR|ERV1|HERVE-int	-	chr7	150034246	150045092	STRG.140697.6	+	150034246,150041220	150040472,150045092	1.000000
testis_male_adult_37_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	37	37	46	2.056011	4.969414	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.630435
testis_male_adult_37_years	chr14	21231373	21231392	21231373	-	High_confidence	7	9	24	1.072701	4.418296	chr14	21231369	21231598	SINE|Alu|AluJb	-	chr14	21211223	21231422	HNRNPC|ENST00000557157.5	-	21211223,21211405,21211809,21212959,21230318,21230996,21231364	21211306,21211566,21211923,21213117,21230366,21231072,21231422	0.875000
testis_male_adult_37_years	chr15	81414552	81414587	81414586	+	RAMPAGE_only	140	140	237	10.592926	5.644675	chr15	81413881	81415086	LTR|ERV1|LTR12D	+	chr15	81408770	81420071	STRG.238646.1	+	81408770,81418983	81415109,81420071	0.978903
testis_male_adult_37_years	chr4	99906539	99906557	99906556	-	High_confidence	5	6	10	0.446959	2.725481	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.700000
testis_male_adult_37_years	chr12	9406446	9406453	9406446	-	High_confidence	7	8	16	0.715134	3.625000	chr12	9406304	9406453	LTR|ERV1|HERVE-int	+	chr12	9397061	9406516	STRG.198588.2	-	9397061,9397614,9398381,9399794,9401746,9402426,9406307	9397214,9397689,9398484,9400326,9401859,9402556,9406516	1.000000
testis_male_adult_37_years	chr15	26244854	26244855	26244854	-	RAMPAGE_only	22	22	22	0.983310	4.186704	chr15	26244669	26245170	LTR|ERV1|LTR12F	-	chr15	26239696	26242168	STRG.232288.1	-	26239696	26242168	0.772727
testis_male_adult_37_years	chr4	6673446	6673447	6673446	+	High_confidence	172	172	175	7.821781	5.381662	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	0.977143
testis_male_adult_37_years	chr10	27840440	27840441	27840440	-	RAMPAGE_only	5	5	7	0.312871	2.584963	chr10	27840388	27840586	LTR|ERVL-MaLR|MLT1O	+	chr10	27812163	27836163	ARMC4|ENST00000481659.1	-	27812163,27835980	27812625,27836163	0.571429
testis_male_adult_37_years	chr6	129552586	129552597	129552596	-	High_confidence	29	29	68	3.039321	4.974981	chr6	129552160	129552906	LINE|L2|L2a	+	chr6	129526625	129552587	AL356124.1|ENST00000430296.5	-	129526625,129528664,129532915,129539175,129540446,129546394,129552541	129526785,129528738,129532969,129539375,129540542,129546492,129552587	0.852941
testis_male_adult_37_years	chr4	123032859	123032886	123032882	+	RAMPAGE_only	42	43	130	5.810466	6.099539	chr4	123032713	123033033	DNA|TcMar-Tigger|MER47B	+	chr4	122923073	123319450	SPATA5|ENST00000274008.4	+	122923073,122927633,122929039,122933438,122934096,122935713,122936099,122938125,122947232,122979231,123028185,123056386,123057208,123090578,123256015,123313887	122923305,122927758,122929197,122933497,122934738,122935843,122936156,122938249,122947488,122979386,123028395,123056440,123057288,123090705,123256180,123319450	0.715385
testis_male_adult_37_years	chr18	71218002	71218017	71218002	-	RAMPAGE_only	3	3	7	0.312871	2.521641	chr18	71217290	71217985	LTR|ERV1|MER50	-	chr18	71216703	71237102	AC091691.2|ENST00000581940.1	-	71216703,71223056,71224130,71237021	71216901,71223157,71224317,71237102	0.571429
testis_male_adult_37_years	chrX	48683362	48683363	48683362	+	High_confidence	5	7	7	0.312871	2.521641	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.857143
testis_male_adult_37_years	chr3	139344535	139344555	139344547	+	High_confidence	97	97	275	12.291370	5.878713	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.909091
testis_male_adult_37_years	chr19	29440998	29440999	29440998	+	High_confidence	12	12	16	0.715134	3.750000	chr19	29439845	29441309	LTR|ERV1|LTR12C	+	chr19	29441011	29443800	STRG.267885.1	+	29441011,29443402	29441355,29443800	1.000000
testis_male_adult_37_years	chr20	8600704	8600726	8600725	+	High_confidence	4	5	13	0.581047	2.688722	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600725	8788523	PLCB1|ENST00000626966.2	+	8600725,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8600781,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788523	0.923077
testis_male_adult_37_years	chr19	11314852	11314862	11314852	-	RAMPAGE_only	4	4	11	0.491655	2.846439	chr19	11314590	11314953	LTR|ERVL|LTR33A	-	chr19	11300866	11321323	AC011472.2|ENST00000585801.1	-	11300866,11306678,11321293	11301236,11306824,11321323	0.545455
testis_male_adult_37_years	chr3	2892219	2892237	2892236	+	High_confidence	28	29	53	2.368882	4.991703	chr3	2892143	2892349	DNA|hAT-Charlie|MER5A	-	chr3	2892214	3056355	CNTN4|ENST00000397459.6	+	2892214,2900684,2902875,2925628,2988344,3026101,3030854,3034631,3037178,3038932,3040036,3042309,3042976,3043591,3053806,3056119	2892260,2900821,2903005,2925779,2988472,3026277,3030975,3034790,3037328,3039003,3040271,3042422,3043163,3043704,3053975,3056355	0.943396
testis_male_adult_37_years	chr4	21582086	21582103	21582086	+	High_confidence	6	6	16	0.715134	3.750000	chr4	21582093	21582211	DNA|hAT-Charlie|MER112	+	chr4	21582086	21608995	STRG.72419.1	+	21582086,21582217,21608809	21582125,21582375,21608995	0.500000
testis_male_adult_37_years	chr21	25399325	25399359	25399338	-	RAMPAGE_only	10	20	43	1.921923	4.296148	chr21	25399099	25399571	LINE|L1|L1M1	+	chr21	25385819	25431701	LINC00158|NR_024027.2	-	25385819,25420707,25424553,25429765,25431177	25386338,25420800,25424649,25430009,25431701	0.581395
testis_male_adult_37_years	chr5	178562725	178562739	178562725	-	High_confidence	34	37	64	2.860537	5.185099	chr5	178562581	178563141	LTR|ERV1|LTR12F	-	chr5	178237617	178562726	STRG.106150.1	-	178237617,178239140,178242041,178242340,178245941,178246253,178246390,178247525,178247774,178248191,178249116,178250060,178252543,178254948,178256352,178256865,178257522,178259720,178261721,178262216,178263207,178267306,178268729,178270336,178288323,178290361,178306874,178560681,178561730,178562597	178238700,178239179,178242128,178242394,178245968,178246307,178246453,178247552,178247831,178248254,178249206,178250105,178252597,178255026,178256397,178256928,178257567,178259747,178261748,178262252,178263324,178267333,178268756,178270363,178288350,178290369,178306919,178560748,178562006,178562726	0.640625
testis_male_adult_37_years	chr1	20028515	20028564	20028515	+	High_confidence	63	73	121	5.408203	6.374448	chr1	20028464	20028814	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.553719
testis_male_adult_37_years	chr13	41457964	41458007	41458006	+	High_confidence	10	10	76	3.396888	5.701215	chr13	41458006	41458136	SINE|MIR|MIRb	+	chr13	41457953	41470855	STRG.213927.3	+	41457953,41458284,41466822,41468775,41470477	41458000,41458470,41466930,41468838,41470855	0.789474
testis_male_adult_37_years	chr10	7619672	7619673	7619672	-	High_confidence	115	124	136	6.078641	5.091710	chr10	7619498	7619860	LTR|ERVL-MaLR|THE1D	-	chr10	7559269	7619673	ITIH5|NM_032817.5	-	7559269,7566029,7569667,7573141,7576452,7579754,7585900,7615981,7617112,7619580	7563384,7566407,7569784,7573195,7577012,7580064,7586069,7616098,7617282,7619673	0.889706
testis_male_adult_37_years	chr22	50574121	50574150	50574149	-	RAMPAGE_only	3	3	8	0.357567	3.000000	chr22	50574097	50574211	LINE|L2|L2b	+	chr22	50572874	50576064	CPT1B|ENST00000423069.1	-	50572874,50573519,50573807,50574334,50574492,50576034	50573060,50573715,50573921,50574419,50574600,50576064	1.000000
testis_male_adult_37_years	chr2	117704943	117704949	117704948	-	High_confidence	4	4	8	0.357567	2.807355	chr2	117704720	117705264	LTR|ERV1|LTR12	-	chr2	117700980	117704929	STRG.35157.1	-	117700980,117702274,117704397	117701293,117702410,117704929	0.750000
testis_male_adult_37_years	chr1	20183095	20183096	20183095	+	High_confidence	9	9	12	0.536351	3.459432	chr1	20183027	20183141	LINE|L2|L2c	-	chr1	20183089	20196048	STRG.2020.2	+	20183089,20190546	20183389,20196048	0.916667
testis_male_adult_37_years	chr13	108886088	108886113	108886088	+	High_confidence	10	10	31	1.385573	4.487123	chr13	108885987	108886286	SINE|Alu|AluY	-	chr13	108886105	109127776	STRG.221016.2	+	108886105,108888371,108898015,108910002,108957687,108961538,108962423,108964760,108992375,109008896,109019710,109046915,109052299,109055045,109055389,109100784,109120369,109125111,109127281	108886462,108888477,108898133,108910150,108957799,108961656,108962495,108964902,108992448,109009049,109019911,109046991,109052475,109055126,109055595,109100887,109120466,109125358,109127776	0.935484
testis_male_adult_37_years	chr13	89163188	89163205	89163188	-	High_confidence	4	4	15	0.670438	3.182006	chr13	89163138	89163445	DNA|hAT-Charlie|MER1B	+	chr13	89141686	89163362	STRG.219129.1	-	89141686,89159465,89163105	89142131,89159648,89163362	0.800000
testis_male_adult_37_years	chr8	30731724	30731752	30731751	+	RAMPAGE_only	11	11	25	1.117397	4.053661	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30728539	30763322	STRG.145374.2	+	30728539,30731528,30744327,30751395,30753034,30754664,30756764,30760887,30763272	30729345,30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763322	0.960000
testis_male_adult_37_years	chr1	6820193	6820232	6820197	+	RAMPAGE_only	9	9	23	1.028006	4.152391	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.521739
testis_male_adult_37_years	chr17	56904345	56904365	56904364	-	High_confidence	2	2	7	0.312871	2.584963	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56895769	56904343	TRIM25|ENST00000570473.5	-	56895769,56899114,56901418,56904254	56895952,56899180,56901578,56904343	0.571429
testis_male_adult_37_years	chr3	43291011	43291035	43291034	+	RAMPAGE_only	4	4	15	0.670438	3.106891	chr3	43290779	43291117	LINE|L2|L2c	-	chr3	43286539	43351138	SNRK|ENST00000296088.11	+	43286539,43299753,43303097,43332168,43340286,43343343,43347338	43286675,43299815,43303792,43332310,43340499,43343478,43351138	1.000000
testis_male_adult_37_years	chr4	79492595	79492622	79492595	+	High_confidence	2	2	9	0.402263	2.500000	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.888889
testis_male_adult_37_years	chr20	25191790	25191826	25191794	-	RAMPAGE_only	15	16	40	1.787836	4.921928	chr20	25191623	25192078	LTR|ERVL|MER70A	-	chr20	25180124	25188147	STRG.274401.1	-	25180124,25186896,25187852	25186160,25186979,25188147	0.900000
testis_male_adult_37_years	chr16	28952152	28952153	28952152	+	RAMPAGE_only	7	7	10	0.446959	2.721928	chr16	28952153	28952214	DNA|hAT-Ac|OldhAT1	+	chr16	28950996	28966465	NFATC2IP|NM_032815.3	+	28950996,28952131,28954564,28955977,28956150,28958716,28958990,28963704	28951398,28952204,28954682,28956058,28956337,28958861,28959100,28966465	1.000000
testis_male_adult_37_years	chrX	16712889	16712959	16712958	-	High_confidence	9	9	38	1.698444	4.984770	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16587998	16712979	CTPS2|NM_019857.4	-	16587998,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712979	0.894737
testis_male_adult_37_years	chr1	20031540	20031541	20031540	+	RAMPAGE_only	6	6	9	0.402263	2.947703	chr1	20031175	20034775	LTR|ERV1|LTR46-int	-	chr1	20060295	20090780	STRG.1853.10	+	20060295,20086082,20088824	20084870,20086227,20090780	0.555556
testis_male_adult_37_years	chr1	23417904	23417928	23417904	-	RAMPAGE_only	3	3	10	0.446959	2.947703	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.800000
testis_male_adult_37_years	chr2	134868969	134869040	134868969	-	RAMPAGE_only	5	5	20	0.893918	4.221928	chr2	134868866	134869040	SINE|MIR|MIR3	+	chr2	134866632	134918606	CCNT2-AS1|NR_036549.1	-	134866632,134868943,134876106,134877519,134918562	134867739,134869041,134876138,134877643,134918606	0.950000
testis_male_adult_37_years	chr15	57385485	57385487	57385485	+	RAMPAGE_only	4	7	10	0.446959	2.503258	chr15	57385251	57385496	SINE|Alu|AluSx3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.900000
testis_male_adult_37_years	chr6	69718632	69718634	69718633	-	RAMPAGE_only	27	44	46	2.056011	5.050341	chr6	69718461	69718829	LTR|ERVL-MaLR|THE1C	-	chr6	69675973	69749408	LMBRD1|ENST00000650473.1	-	69675973,69676449,69697562,69699042,69700764,69701442,69701888,69713644,69718955,69737941,69741788,69743783,69743987,69749340	69676271,69676541,69697641,69699192,69700869,69701545,69701953,69713797,69719081,69738015,69741877,69743881,69744047,69749408	0.913043
testis_male_adult_37_years	chr1	52914056	52914057	52914056	-	RAMPAGE_only	9	10	11	0.491655	3.277613	chr1	52913984	52914299	LINE|L2|L2b	-	chr1	52913419	52921785	ECHDC2|ENST00000542552.1	-	52913419,52917543,52921552	52914095,52917615,52921785	0.818182
testis_male_adult_37_years	chr3	16606113	16606114	16606113	-	High_confidence	5	5	7	0.312871	2.807355	chr3	16605956	16606074	LINE|L2|L2a	-	chr3	16586791	16605499	DAZL|ENST00000399444.6	-	16586791,16592049,16593654,16594532,16595313,16596749,16596987,16597489,16598086,16598451,16605202	16588713,16592148,16593768,16594583,16595385,16596889,16597051,16597541,16598178,16598598,16605499	0.857143
testis_male_adult_37_years	chr2	219313591	219313594	219313593	+	High_confidence	540	732	820	36.650631	5.839061	chr2	219312637	219314005	LTR|ERV1|LTR12C	+	chr2	219313604	219317929	STRG.45513.1	+	219313604	219317929	0.993902
testis_male_adult_37_years	chr12	93090479	93090519	93090518	+	High_confidence	4	4	12	0.536351	3.188722	chr12	93090424	93090629	SINE|MIR|MIRc	+	chr12	93090521	93107600	AC138123.2|ENST00000551928.1	+	93090521,93091339,93096114,93099332,93106321,93107307	93090628,93091444,93096236,93099403,93106414,93107600	0.500000
testis_male_adult_37_years	chr4	48134557	48134575	48134563	-	High_confidence	3	3	8	0.357567	2.521641	chr4	48134448	48134630	SINE|MIR|MIR3	-	chr4	48066392	48134256	TXK|ENST00000264316.8	-	48066392,48071516,48073934,48076401,48079911,48086465,48089749,48094076,48095142,48104900,48110537,48112306,48113206,48114347,48134154	48067705,48071674,48074053,48076466,48080128,48086637,48089824,48094204,48095222,48104955,48110603,48112512,48113309,48114402,48134256	0.500000
testis_male_adult_37_years	chr13	24272650	24272672	24272663	+	High_confidence	5	5	19	0.849222	4.142664	chr13	24272710	24272887	SINE|MIR|MIRb	+	chr13	24272688	24278769	SPATA13|ENST00000488060.1	+	24272688,24278613	24273137,24278769	0.947368
testis_male_adult_37_years	chr6	73990570	73990585	73990584	+	High_confidence	8	8	17	0.759830	3.577820	chr6	73989808	73991194	LTR|ERV1|LTR12C	-	chr6	73990445	73991416	STRG.114934.1	+	73990445	73991416	0.529412
testis_male_adult_37_years	chr13	52661474	52661493	52661489	+	RAMPAGE_only	2	2	9	0.402263	3.000000	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	0.888889
testis_male_adult_37_years	chr11	76365088	76365118	76365117	-	RAMPAGE_only	11	11	24	1.072701	4.061482	chr11	76364999	76365311	SINE|Alu|AluSz	+	chr11	76352696	76368643	THAP12|ENST00000531878.1	-	76352696,76355617,76360955,76364337,76365851,76368565	76352794,76355654,76361063,76364432,76365972,76368643	0.750000
testis_male_adult_37_years	chr10	16278051	16278071	16278051	+	High_confidence	2	2	9	0.402263	2.947703	chr10	16278019	16278316	LTR|Gypsy|LTR81	+	chr10	16278700	16289048	AL355339.1|ENST00000434386.5	+	16278700,16283729,16288841	16278749,16283908,16289048	0.666667
testis_male_adult_37_years	chr9	97575039	97575040	97575039	+	RAMPAGE_only	101	106	140	6.257425	5.124649	chr9	97574036	97575455	LTR|ERV1|LTR12C	+	chr9	97572905	97601748	STRG.164795.2	+	97572905,97591290,97599633	97575486,97591435,97601748	0.964286
testis_male_adult_37_years	chr12	56795270	56795271	56795270	-	High_confidence	64	64	67	2.994625	4.777518	chr12	56794855	56796404	LTR|ERV1|LTR12C	-	chr12	56794839	56795043	STRG.203715.1	-	56794839	56795043	0.865672
testis_male_adult_37_years	chr6	157830533	157830564	157830542	-	High_confidence	7	8	21	0.938614	3.892407	chr6	157829920	157830586	LINE|L1|L1MEd	-	chr6	157829142	157830573	AL391863.2|ENST00000411838.1	-	157829142,157830192	157829442,157830573	0.761905
testis_male_adult_37_years	chr11	65434552	65434748	65434588	+	RAMPAGE_only	21	23	225	10.056576	5.888543	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
testis_male_adult_37_years	chr18	38291372	38291382	38291373	+	High_confidence	23	28	47	2.100707	4.176297	chr18	38291284	38291530	LTR|ERVL-MaLR|THE1C	+	chr18	38291385	38291899	STRG.261075.1	+	38291385	38291899	0.744681
testis_male_adult_37_years	chr4	90649467	90649508	90649507	+	High_confidence	70	70	233	10.414143	7.066652	chr4	90649330	90649700	LTR|ERVL-MaLR|MLT1A	+	chr4	90649519	91130040	CCSER1|ENST00000509109.5	+	90649519,90723913,90815761,90911254,90918229,90923369,91015360,91017157,91085949,91129842	90649624,90723991,90815845,90911357,90918327,90923447,91015494,91017304,91085994,91130040	0.545064
testis_male_adult_37_years	chr6	146799456	146799460	146799459	+	RAMPAGE_only	4	4	10	0.446959	2.521928	chr6	146799341	146799553	SINE|Alu|AluSc5	+	chr6	146801858	146807838	ADGB|ENST00000367489.2	+	146801858,146807401	146802011,146807838	0.700000
testis_male_adult_37_years	chr13	57286565	57286591	57286568	+	High_confidence	7	7	18	0.804526	3.852169	chr13	57285459	57287161	LTR|ERV1|LTR12C	-	chr13	57286475	57725293	STRG.215802.1	+	57286475,57469520,57629814,57666467,57666660,57724611	57287202,57469621,57635111,57666526,57666833,57725293	0.944444
testis_male_adult_37_years	chr13	30235635	30235641	30235640	+	High_confidence	5	5	12	0.536351	3.277613	chr13	30235557	30235768	LTR|ERVL|MER21C	+	chr13	30234922	30242035	STRG.212750.1	+	30234922,30235624,30241253,30241607	30235106,30235700,30241322,30242035	0.500000
testis_male_adult_37_years	chr7	7566468	7566488	7566487	-	High_confidence	3	5	10	0.446959	3.121928	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7552461	7566996	AC004982.2|ENST00000609497.5	-	7552461,7555155,7565913	7552922,7555189,7566996	1.000000
testis_male_adult_37_years	chr10	52046739	52046771	52046755	+	High_confidence	3	3	16	0.715134	3.456565	chr10	52046731	52046819	LINE|L2|L2a	+	chr10	52046747	52185074	PRKG1|ENST00000646354.1	+	52046747,52054483,52062536,52125733,52128369,52133839,52161888,52184687	52046926,52054561,52062631,52125983,52128541,52133905,52161963,52185074	0.812500
testis_male_adult_37_years	chr13	30234966	30234971	30234966	+	High_confidence	5	6	10	0.446959	2.947703	chr13	30234785	30235142	LTR|ERVL|MER21C	+	chr13	30234922	30242035	STRG.212750.1	+	30234922,30235624,30241253,30241607	30235106,30235700,30241322,30242035	0.700000
testis_male_adult_37_years	chr3	12768962	12768989	12768988	+	High_confidence	6	6	16	0.715134	3.625000	chr3	12767989	12769424	LTR|ERV1|LTR12C	-	chr3	12768944	12769585	STRG.49567.1	+	12768944	12769585	0.562500
testis_male_adult_37_years	chr19	31023335	31023336	31023335	+	High_confidence	21	21	30	1.340877	4.182006	chr19	31023100	31023570	LTR|ERVL|MER70A	+	chr19	31024064	31030728	STRG.268360.1	+	31024064,31030163	31024266,31030728	0.700000
testis_male_adult_37_years	chr4	80301327	80301328	80301327	+	RAMPAGE_only	142	152	152	6.793776	5.911556	chr4	80301302	80301442	DNA|TcMar-Tigger|Tigger9b	+	chr4	80335719	80963756	C4orf22|NM_152770.2	+	80335719,80362753,80583092,80869992,80944809,80963516	80335879,80362884,80583183,80870135,80944939,80963756	0.861842
testis_male_adult_37_years	chr8	92765550	92765551	92765550	-	High_confidence	8	8	12	0.536351	3.095795	chr8	92765116	92769888	LTR|ERVL|HERVL-int	-	chr8	92699749	92765578	FLJ46284|ENST00000521148.5	-	92699749,92718398,92765442	92699989,92718518,92765578	0.666667
testis_male_adult_37_years	chr2	159733925	159733964	159733959	+	High_confidence	12	13	62	2.771145	4.717567	chr2	159733885	159733975	DNA|TcMar-Tigger|Tigger16b	+	chr2	159733964	159767409	MARCH7|ENST00000409591.5	+	159733964,159743060,159745769,159747804,159752401,159759225,159762879,159764625,159767283	159734082,159743253,159745937,159748903,159752571,159759335,159762993,159764674,159767409	0.983871
testis_male_adult_37_years	chr21	35815027	35815097	35815039	-	RAMPAGE_only	8	8	44	1.966619	4.784942	chr21	35815014	35815263	LINE|L2|L2c	+	chr21	35359455	35888925	STRG.281424.8	-	35359455,35461960,35580659,35864284,35886209	35372793,35462025,35580929,35864467,35888925	0.659091
testis_male_adult_37_years	chr6	6745262	6745265	6745262	-	High_confidence	55	57	80	3.575671	5.334979	chr6	6744950	6746228	LTR|ERV1|LTR12E	-	chr6	6704343	6745258	STRG.107183.2	-	6704343,6710871,6711696,6744936	6705078,6710981,6711858,6745258	0.775000
testis_male_adult_37_years	chr16	13931972	13931975	13931974	+	High_confidence	10	13	17	0.759830	3.577820	chr16	13931846	13931997	DNA|hAT-Charlie|Charlie1a	-	chr16	13932025	13948425	ERCC4|ENST00000389138.7	+	13932025,13934191,13935145,13937765,13944722,13947613	13932404,13934302,13935743,13937858,13944835,13948425	0.941176
testis_male_adult_37_years	chr15	26186301	26186302	26186301	-	High_confidence	69	80	85	3.799151	5.529992	chr15	26186110	26186612	LTR|ERV1|LTR12F	-	chr15	26185354	26186359	STRG.232262.1	-	26185354	26186359	0.964706
testis_male_adult_37_years	chr5	7373146	7373179	7373171	+	High_confidence	7	8	39	1.743140	4.110236	chr5	7373204	7373473	SINE|Alu|AluSc8	+	chr5	7373116	7379790	LINC02142|ENST00000500616.2	+	7373116,7379612	7373515,7379790	0.948718
testis_male_adult_37_years	chr10	56155018	56155184	56155183	-	High_confidence	31	37	251	11.218669	4.928001	chr10	56154938	56156388	LTR|ERV1|LTR12C	+	chr10	55773459	56155699	STRG.174439.1	-	55773459,55799761,56151898,56154831	55773507,55799882,56151995,56155699	0.912351
testis_male_adult_37_years	chr2	200174782	200174807	200174796	-	High_confidence	7	7	34	1.519660	4.370859	chr2	200174601	200175916	LTR|ERV1|LTR12C	+	chr2	199971704	200175208	STRG.43439.1	-	199971704,200010690,200174569	199972044,200010896,200175208	0.647059
testis_male_adult_37_years	chr18	36064800	36064816	36064800	-	High_confidence	5	5	10	0.446959	3.121928	chr18	36064074	36065175	LTR|ERV1|LTR12D	+	chr18	36052874	36064424	RPRD1A|ENST00000588459.1	-	36052874,36062977,36063992	36052920,36063075,36064424	0.700000
testis_male_adult_37_years	chr7	2182638	2182661	2182660	+	High_confidence	10	18	28	1.251485	4.396292	chr7	2182256	2182940	LINE|L1|L1MB5	+	chr7	2182626	2183671	STRG.125156.1	+	2182626	2183671	0.785714
testis_male_adult_37_years	chr5	154976162	154976164	154976162	-	High_confidence	2	4	6	0.268175	2.584963	chr5	154975748	154976595	LTR|ERV1|LTR12	-	chr5	154963192	154976159	STRG.104095.1	-	154963192,154975833	154963237,154976159	0.666667
testis_male_adult_37_years	chr22	23016497	23016498	23016497	-	High_confidence	823	827	887	39.645256	4.627035	chr22	23016096	23017584	LTR|ERV1|LTR12C	-	chr22	22879961	23016476	STRG.283700.1	-	22879961,22881974,23013666,23016092	22881174,22882124,23014683,23016476	0.981962
testis_male_adult_37_years	chr16	74281454	74281485	74281482	-	RAMPAGE_only	2	4	14	0.625742	3.546594	chr16	74281396	74281660	LTR|ERV1|LTR48	-	chr16	74245653	74294442	STRG.247862.6	-	74245653,74271720,74273493	74247826,74272768,74294442	0.500000
testis_male_adult_37_years	chr3	23235041	23235061	23235041	+	RAMPAGE_only	2	2	8	0.357567	2.521641	chr3	23235003	23235521	LINE|L2|L2a	-	chr3	23208699	23290582	STRG.51071.6	+	23208699,23217261,23246483	23208875,23246302,23290582	0.875000
testis_male_adult_37_years	chr1	6200047	6200071	6200047	-	High_confidence	7	8	17	0.759830	2.750000	chr1	6200027	6200112	LINE|L2|L2b	+	chr1	6185019	6199619	RPL22|NM_000983.3	-	6185019,6192929,6197651,6199561	6186816,6193054,6197756,6199619	0.941176
testis_male_adult_37_years	chr13	24968471	24968501	24968471	-	High_confidence	6	6	25	1.117397	4.088779	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24928754	24968469	TPTE2P1|NR_026730.1	-	24928754,24941986,24942931,24951396,24968205	24934663,24942108,24943021,24951488,24968469	0.520000
testis_male_adult_37_years	chr6	111387800	111387801	111387800	-	RAMPAGE_only	9	10	10	0.446959	2.641604	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299051	111381673	STRG.119257.10	-	111299051,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111381673	0.800000
testis_male_adult_37_years	chr3	78029829	78029891	78029860	-	High_confidence	42	42	300	13.408767	6.886588	chr3	78029766	78030361	LTR|ERV1|LTR12D	+	chr3	78016924	78030214	STRG.56331.3	-	78016924,78029750	78022899,78030214	0.640000
testis_male_adult_37_years	chr12	8788249	8788253	8788252	+	High_confidence	17	17	26	1.162093	3.819774	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.807692
testis_male_adult_37_years	chr1	200738000	200738011	200738010	+	RAMPAGE_only	6	8	12	0.536351	3.277613	chr1	200737846	200738134	LINE|L2|L2c	-	chr1	200739557	200860707	CAMSAP2|NM_001297707.1	+	200739557,200760838,200807375,200815560,200828572,200832199,200832705,200841993,200844781,200847209,200847639,200848031,200852540,200853274,200854816,200856009,200857305,200857753	200739966,200761098,200807537,200815644,200828605,200832341,200832845,200842087,200844869,200847292,200847709,200850234,200852677,200853495,200854889,200856125,200857424,200860707	0.750000
testis_male_adult_37_years	chr6	164929868	164929877	164929876	+	High_confidence	11	11	18	0.804526	3.969816	chr6	164929817	164929964	SINE|MIR|MIR3	+	chr6	164929717	164930713	STRG.124110.1	+	164929717	164930713	0.888889
testis_male_adult_37_years	chr18	35730747	35730853	35730852	-	High_confidence	175	181	1055	47.154166	6.611335	chr18	35730699	35731255	LTR|ERVL|LTR18B	-	chr18	35677295	35730837	STRG.261001.3	-	35677295,35696988,35711985,35730681	35696339,35697123,35719749,35730837	0.851185
testis_male_adult_37_years	chr12	33415989	33416005	33415989	-	RAMPAGE_only	3	3	11	0.491655	2.721928	chr12	33415884	33416076	LINE|L2|L2a	+	chr12	33382377	33407383	STRG.201190.2	-	33382377,33385170,33406788	33382520,33385291,33407383	0.636364
testis_male_adult_37_years	chr10	103898400	103898405	103898400	-	RAMPAGE_only	6	6	10	0.446959	3.121928	chr10	103898173	103898363	LINE|L1|L1ME4b	-	chr10	103882744	103900153	STN1|ENST00000472951.1	-	103882744,103889071,103892129,103897547,103898876,103899959	103882841,103889144,103892252,103897719,103899000,103900153	0.600000
testis_male_adult_37_years	chr16	84343356	84343409	84343374	-	High_confidence	6	6	33	1.474964	3.892879	chr16	84343329	84343478	LTR|ERVL-MaLR|MLT1O	+	chr16	84342463	84343407	AC010551.1|ENST00000568458.1	-	84342463,84343070	84342595,84343407	0.939394
testis_male_adult_37_years	chr3	157488278	157488291	157488278	-	RAMPAGE_only	13	15	27	1.206789	4.315824	chr3	157488166	157488910	LINE|L2|L2	+	chr3	157460094	157489356	VEPH1|ENST00000482434.1	-	157460094,157470313,157489054	157460355,157470529,157489356	0.740741
testis_male_adult_37_years	chr17	28928244	28928250	28928244	-	RAMPAGE_only	2	3	7	0.312871	2.521641	chr17	28928124	28928367	LTR|ERVL-MaLR|MLT1H1	+	chr17	28909569	28950954	PHF12|ENST00000582436.5	-	28909569,28911111,28912481,28913878,28917284,28919142,28921687,28923908,28950064,28950894	28910369,28911237,28913277,28914037,28917449,28919275,28921808,28927063,28950246,28950954	0.714286
testis_male_adult_37_years	chr5	28614564	28614569	28614568	+	High_confidence	4	7	16	0.715134	3.323231	chr5	28614407	28614792	LTR|ERVL-MaLR|MLT1A1	+	chr5	28614576	28615606	STRG.91594.1	+	28614576	28615606	0.562500
testis_male_adult_37_years	chr3	27216570	27216599	27216585	+	High_confidence	14	17	67	2.994625	4.952221	chr3	27216391	27216862	LTR|ERVL-MaLR|MLT1G1	+	chr3	27216472	27222384	STRG.51358.1	+	27216472,27220659	27216680,27222384	0.985075
testis_male_adult_37_years	chr19	51354400	51354420	51354400	-	High_confidence	6	6	23	1.028006	4.262692	chr19	51354373	51354482	SINE|MIR|MIR3	-	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
testis_male_adult_37_years	chr9	96302553	96302570	96302553	-	RAMPAGE_only	2	2	6	0.268175	2.584963	chr9	96302437	96302597	LINE|L2|L2a	-	chr9	96235330	96309098	AL160269.1|ENST00000464104.6	-	96235330,96240757,96244328,96245344,96246555,96249750,96249909,96250295,96251126,96251417,96252802,96254867,96298415,96301950,96305273,96308953	96235570,96240907,96244394,96245426,96246590,96249786,96250052,96250485,96251261,96251485,96252910,96254943,96298462,96302311,96305391,96309098	0.500000
testis_male_adult_37_years	chr18	27342773	27342774	27342773	+	High_confidence	5	5	8	0.357567	2.521641	chr18	27342733	27343200	LTR|ERVL-MaLR|MLT1D	-	chr18	27343251	27346110	AC021382.1|ENST00000584547.1	+	27343251,27344220,27345370	27343311,27344342,27346110	0.625000
testis_male_adult_37_years	chr1	225661666	225661679	225661666	-	RAMPAGE_only	4	4	12	0.536351	3.418296	chr1	225661348	225661659	SINE|Alu|AluY	-	chr1	225486831	225653143	ENAH|NM_001008493.1	-	225486831,225498346,225500991,225504990,225507950,225511810,225512656,225512870,225514595,225517195,225519197,225530553,225554905,225567248,225652685	225497812,225498404,225501070,225505053,225508017,225511859,225512714,225513016,225514900,225517306,225519565,225530638,225555083,225567414,225653143	0.750000
testis_male_adult_37_years	chr11	60337042	60337052	60337042	+	RAMPAGE_only	2	2	8	0.357567	2.521641	chr11	60336876	60337049	SINE|MIR|MIR1_Amn	-	chr11	60334970	60396596	MS4A6E|ENST00000532756.1	+	60334970,60337740,60339865,60340775,60396561	60335042,60337947,60339964,60340928,60396596	0.875000
testis_male_adult_37_years	chr2	159428397	159428404	159428403	-	RAMPAGE_only	3	3	8	0.357567	2.750000	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.750000
testis_male_adult_37_years	chr12	81125685	81125744	81125743	-	High_confidence	2	2	14	0.625742	3.664498	chr12	81125377	81125820	LINE|L2|L2	+	chr12	81094374	81125845	AC078955.1|ENST00000547123.1	-	81094374,81104768,81117965,81124398,81125583	81094732,81104828,81118052,81124513,81125845	0.642857
testis_male_adult_37_years	chr2	173282036	173282037	173282036	-	High_confidence	147	152	162	7.240734	5.216480	chr2	173281737	173283149	LTR|ERV1|LTR12C	-	chr2	173197711	173282036	MAP3K20-AS1|ENST00000423106.2	-	173197711,173207546,173209646,173212668,173214279,173215625,173271510,173281681	173198824,173207658,173209945,173212791,173214496,173215836,173271618,173282036	0.814815
testis_male_adult_37_years	chr3	129439754	129439774	129439754	-	High_confidence	2	3	7	0.312871	2.584963	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129431265	129440007	MBD4|ENST00000503197.5	-	129431265,129432555,129433097,129433849,129434061,129436442,129437719,129439729	129431578,129432606,129433247,129433984,129434136,129437308,129437950,129440007	0.714286
testis_male_adult_37_years	chr16	66451734	66451757	66451734	+	RAMPAGE_only	3	3	7	0.312871	2.807355	chr16	66451604	66451822	SINE|MIR|MIRb	-	chr16	66469713	66493529	BEAN1|ENST00000563075.1	+	66469713,66492961	66469865,66493529	0.571429
testis_male_adult_37_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	25	25	25	1.117397	3.217797	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
testis_male_adult_37_years	chr18	79167744	79167767	79167766	+	RAMPAGE_only	4	4	16	0.715134	3.906891	chr18	79166708	79168032	LTR|ERV1|MER52A	-	chr18	79206935	79277264	ATP9B|ENST00000585674.1	+	79206935,79213961,79253380,79277053	79207012,79214038,79253541,79277264	0.500000
testis_male_adult_37_years	chr12	95551442	95551513	95551442	-	High_confidence	9	9	73	3.262800	5.579834	chr12	95551437	95551690	LINE|L2|L2b	+	chr12	95516559	95551490	USP44|ENST00000258499.7	-	95516559,95520996,95524679,95528806,95532828,95551271	95518353,95521202,95524788,95529002,95534326,95551490	0.931507
testis_male_adult_37_years	chr5	143009380	143009392	143009380	+	RAMPAGE_only	7	7	21	0.938614	3.721928	chr5	143009357	143009571	SINE|MIR|MIR	+	chr5	143014079	143223194	STRG.102600.6	+	143014079,143041815,143054438,143056027,143057641,143120987,143133966,143147230,143207197,143211331,143222357	143037261,143041890,143054526,143056086,143057747,143121147,143134105,143147381,143210987,143214088,143223194	0.523810
testis_male_adult_37_years	chr13	85205736	85205737	85205736	+	High_confidence	79	83	98	4.380197	5.020050	chr13	85204731	85206134	LTR|ERV1|LTR12C	+	chr13	85205711	85206499	STRG.218503.1	+	85205711	85206499	0.918367
testis_male_adult_37_years	chr4	99127444	99127445	99127444	-	RAMPAGE_only	5	5	8	0.357567	2.807355	chr4	99127369	99127518	LINE|CR1|CR1_Mam	+	chr4	99124378	99144276	ADH4|ENST00000505590.5	-	99124378,99126593,99127208,99131503,99136465,99139060,99141540,99142678,99143165,99144204	99124466,99126732,99127344,99131764,99136697,99139148,99141682,99142780,99143305,99144276	0.500000
testis_male_adult_37_years	chr4	170091694	170091695	170091694	-	High_confidence	29	31	41	1.832532	4.804508	chr4	170091048	170092581	LTR|ERV1|LTR12C	+	chr4	170073249	170091699	AADAT|ENST00000502392.1	-	170073249,170078508,170087115,170088395,170089623,170090417,170091593	170073345,170078583,170087248,170088564,170089736,170090531,170091699	0.634146
testis_male_adult_37_years	chr7	32205617	32205618	32205617	+	High_confidence	23	30	32	1.430269	4.438067	chr7	32205335	32206028	LTR|ERV1|LTR12_	+	chr7	32205627	32207061	STRG.128990.1	+	32205627	32207061	0.937500
testis_male_adult_37_years	chr12	31782153	31782189	31782188	+	High_confidence	16	16	38	1.698444	4.465946	chr12	31781960	31782812	LTR|ERV1|LTR1A2	+	chr12	31782167	31782972	STRG.201046.1	+	31782167	31782972	0.921053
testis_male_adult_37_years	chr10	16027979	16027980	16027979	-	High_confidence	10	10	15	0.670438	3.506891	chr10	16027537	16028082	LINE|L1|L1MCa	+	chr10	16027101	16027989	STRG.171062.1	-	16027101	16027989	0.533333
testis_male_adult_37_years	chr14	57278417	57278418	57278417	+	High_confidence	9	9	9	0.402263	2.947703	chr14	57278141	57278418	LTR|ERVL|LTR33B	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	1.000000
testis_male_adult_37_years	chr19	20423690	20423704	20423703	-	RAMPAGE_only	43	53	135	6.033945	5.054183	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.822222
testis_male_adult_37_years	chr19	27901262	27901317	27901270	+	RAMPAGE_only	11	11	51	2.279490	5.068692	chr19	27901026	27901849	LINE|L2|L2b	-	chr19	27936385	27963366	STRG.267639.12	+	27936385,27956201,27958504,27963265	27936974,27956276,27958539,27963366	0.568627
testis_male_adult_37_years	chr18	72209396	72209418	72209396	-	High_confidence	4	5	16	0.715134	3.750000	chr18	72208942	72210364	LTR|ERV1|LTR12C	+	chr18	71936960	72209662	STRG.264244.1	-	71936960,71944478,72208931	71937406,71944602,72209662	0.937500
testis_male_adult_37_years	chr19	52981576	52981604	52981596	-	High_confidence	4	6	15	0.670438	3.506891	chr19	52981568	52981909	LINE|L2|L2a	-	chr19	52970382	52981544	ZNF702P|ENST00000598752.5	-	52970382,52980891,52981521	52970842,52980972,52981544	0.933333
testis_male_adult_37_years	chr10	119780136	119780162	119780136	+	RAMPAGE_only	7	8	24	1.072701	3.938722	chr10	119779889	119780198	DNA|TcMar-Tigger|Tigger3b	-	chr10	119750876	119828360	INPP5F|ENST00000647699.1	+	119750876,119781634,119791516,119791868,119792156,119796714,119797460,119798542,119804172,119805383,119806359,119807931,119810099,119811756,119820845,119822430,119823070,119823814,119826630	119751156,119781771,119791645,119792036,119792213,119796913,119797640,119798610,119804297,119805461,119806480,119808060,119810217,119811955,119820917,119822504,119823199,119823902,119828360	0.958333
testis_male_adult_37_years	chr17	17487270	17487301	17487300	+	RAMPAGE_only	81	82	147	6.570296	5.025199	chr17	17486169	17487716	LTR|ERV1|LTR12C	+	chr17	17485021	17488372	MED9|ENST00000624097.1	+	17485021	17488372	0.972789
testis_male_adult_37_years	chr14	75847824	75847825	75847824	+	RAMPAGE_only	23	26	31	1.385573	3.919903	chr14	75847754	75847919	DNA|hAT-Charlie|MER5A	-	chr14	75882718	75902504	TTLL5|ENST00000557219.1	+	75882718,75902141	75882902,75902504	0.612903
testis_male_adult_37_years	chr7	6590246	6590293	6590246	+	High_confidence	4	4	32	1.430269	4.348394	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.937500
testis_male_adult_37_years	chr4	4585574	4585628	4585574	+	RAMPAGE_only	7	7	26	1.162093	4.392747	chr4	4585405	4585928	LTR|ERVL-MaLR|MLT1A0-int	+	chr4	4583761	4588241	STRG.69346.1	+	4583761	4588241	1.000000
testis_male_adult_37_years	chr14	76706322	76706323	76706322	-	High_confidence	136	136	164	7.330126	5.651497	chr14	76705904	76707210	LTR|ERV1|LTR12C	-	chr14	76500313	76706310	STRG.228841.1	-	76500313,76601476,76705896	76502260,76601592,76706310	0.957317
testis_male_adult_37_years	chr8	34784784	34784785	34784784	+	High_confidence	4	5	7	0.312871	2.521641	chr8	34784701	34785009	SINE|Alu|AluY	-	chr8	34784811	34837969	LINC01288|ENST00000648617.1	+	34784811,34792757,34819271,34837580	34785071,34792965,34819405,34837969	1.000000
testis_male_adult_37_years	chr2	230961303	230961333	230961303	-	High_confidence	14	15	31	1.385573	4.631616	chr2	230961270	230961508	LTR|ERVL-MaLR|MLT1C	-	chr2	230909865	230961066	GPR55|ENST00000392039.2	-	230909865,230960774	230911096,230961066	0.612903
testis_male_adult_37_years	chr12	42388539	42388557	42388556	+	RAMPAGE_only	11	11	33	1.474964	4.680758	chr12	42387718	42388711	LTR|ERVK|LTR5B	+	chr12	42387389	42400485	PPHLN1|ENST00000547440.1	+	42387389,42393569,42398853	42387535,42393689,42400485	0.545455
testis_male_adult_37_years	chr5	89456072	89456077	89456072	+	RAMPAGE_only	3	3	12	0.536351	3.277613	chr5	89455901	89456270	LTR|ERVL-MaLR|MLT1A	+	chr5	89418806	89466398	MEF2C-AS1|ENST00000508742.1	+	89418806,89465665,89465915	89418892,89465775,89466398	0.666667
testis_male_adult_37_years	chr8	82442413	82442416	82442413	+	High_confidence	67	67	143	6.391513	5.940029	chr8	82441240	82442829	LTR|ERV1|LTR12C	+	chr8	82442353	82526304	STRG.149727.1	+	82442353,82488144,82525965	82442914,82488273,82526304	0.874126
testis_male_adult_37_years	chr5	55766886	55766911	55766910	+	High_confidence	11	11	19	0.849222	3.794653	chr5	55766922	55766980	DNA|hAT-Charlie|MER5A	+	chr5	55766910	55816777	DDX4|ENST00000511853.1	+	55766910,55767880,55781065,55781933,55785446,55785728,55786517,55787845,55790575,55792640,55798425,55813672,55814900,55815312,55816462	55766966,55767940,55781146,55781981,55785494,55785871,55786670,55788000,55790705,55792807,55798571,55813772,55815171,55815423,55816777	0.789474
testis_male_adult_37_years	chr8	140898321	140898333	140898321	-	RAMPAGE_only	3	3	6	0.268175	2.584963	chr8	140898046	140898347	DNA|hAT-Charlie|MER5C	-	chr8	140658388	140890768	PTK2|ENST00000519654.5	-	140658388,140664916,140668268,140674297,140675459,140686631,140700890,140706118,140717597,140735250,140739017,140743229,140744651,140746759,140752231,140761164,140764233,140789473,140793353,140800458,140803542,140818276,140818879,140830471,140846259,140846598,140864311,140879470,140890542	140659678,140664997,140668424,140674404,140675499,140686694,140701022,140706205,140717709,140735455,140739107,140743330,140744767,140746860,140752316,140761262,140764290,140789526,140793384,140800576,140803650,140818354,140819020,140830526,140846322,140846678,140864399,140879637,140890768	0.666667
testis_male_adult_37_years	chr3	194708445	194708472	194708471	+	High_confidence	15	15	45	2.011315	4.561313	chr3	194708003	194708522	LTR|ERVL-MaLR|MLT1F	-	chr3	194708420	194782168	LINC01968|ENST00000423318.1	+	194708420,194744573,194745534,194779461	194709147,194744689,194745631,194782168	0.800000
testis_male_adult_37_years	chr5	25963826	25963839	25963838	+	High_confidence	86	86	245	10.950493	5.368431	chr5	25963846	25964173	LTR|ERV1|MER65-int	+	chr5	25963808	25985197	STRG.91367.1	+	25963808,25969196	25969149,25985197	0.951020
testis_male_adult_37_years	chr2	195546913	195546951	195546919	-	High_confidence	97	101	259	11.576236	4.231295	chr2	195546499	195547866	LTR|ERV1|LTR12C	-	chr2	195398818	195546955	STRG.43076.2	-	195398818,195539124,195546490	195399504,195539278,195546955	0.969112
testis_male_adult_37_years	chr4	122700441	122700442	122700441	+	High_confidence	219	221	285	12.738329	6.673241	chr4	122700197	122700669	LTR|ERVL|MER70A	+	chr4	122700310	122713285	STRG.81090.2	+	122700310,122703681	122703560,122713285	0.964912
testis_male_adult_37_years	chr1	154187241	154187258	154187257	-	RAMPAGE_only	4	4	8	0.357567	2.521641	chr1	154187222	154187332	DNA|hAT-Charlie|MER58A	-	chr1	154172066	154183816	TPM3|ENST00000368527.7	-	154172066,154172907,154173083,154176114,154183608	154172104,154172978,154173201,154176248,154183816	0.625000
testis_male_adult_37_years	chr9	79887832	79887875	79887847	-	High_confidence	20	30	106	4.737765	5.713869	chr9	79887841	79889062	LTR|ERVL|ERVL-E-int	-	chr9	79882002	79887889	STRG.162948.2	-	79882002	79887889	0.962264
testis_male_adult_37_years	chr3	110969835	110969836	110969835	-	High_confidence	50	51	63	2.815841	5.231898	chr3	110969731	110970304	LTR|ERV1|LTR10C	-	chr3	110965059	110970025	STRG.59063.7	-	110965059	110970025	0.777778
testis_male_adult_37_years	chr1	239186636	239186648	239186636	-	High_confidence	19	21	35	1.564356	4.500712	chr1	239186369	239186597	LTR|ERV1|ERV24B_Prim-int	-	chr1	239175262	239186741	STRG.21268.1	-	239175262,239177747,239186594	239177544,239177827,239186741	0.942857
testis_male_adult_37_years	chrX	119127811	119127818	119127811	-	High_confidence	1678	1912	3605	161.128689	7.427342	chrX	119127624	119127833	LINE|L2|L2a	+	chrX	119078634	119128086	STRG.295658.1	-	119078634,119083014,119085382,119086545,119093666,119096493,119104991,119108336,119109075,119116495,119123581,119127726	119081504,119083120,119085546,119089746,119093775,119096691,119105147,119108471,119109202,119116664,119123652,119128086	0.950902
testis_male_adult_37_years	chr4	86453386	86453409	86453398	-	High_confidence	3	3	12	0.536351	3.459432	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86159365	86453399	MAPK10|ENST00000642048.1	-	86159365,86194308,86277049,86354529,86453029	86159467,86194407,86277223,86354644,86453399	0.833333
testis_male_adult_37_years	chr13	47945936	47945984	47945947	-	High_confidence	9	9	64	2.860537	5.203803	chr13	47945691	47946353	DNA|TcMar-Tigger|MER44D	+	chr13	47936617	47945939	SUCLA2|ENST00000481279.2	-	47936617,47943344,47945730	47936773,47943445,47945939	0.875000
testis_male_adult_37_years	chr19	52274426	52274483	52274455	+	High_confidence	8	9	39	1.743140	4.875146	chr19	52274460	52274600	DNA|TcMar-Tigger|Tigger3	+	chr19	52274461	52291761	STRG.271524.3	+	52274461,52275577,52282110,52283284,52290065	52274669,52275607,52282237,52283413,52291761	0.923077
testis_male_adult_37_years	chr4	184700518	184700554	184700518	-	RAMPAGE_only	3	3	15	0.670438	3.467720	chr4	184700300	184700537	SINE|MIR|MIR	-	chr4	184695128	184698096	CENPU|ENST00000502461.1	-	184695128,184697646	184695401,184698096	0.733333
testis_male_adult_37_years	chr21	40705595	40705596	40705595	-	RAMPAGE_only	11	13	13	0.581047	3.392747	chr21	40705426	40705791	LTR|ERVL-MaLR|THE1D	-	chr21	40353171	40727300	STRG.282000.2	-	40353171,40369098,40692809,40708453,40727114	40353743,40369245,40692956,40708771,40727300	0.846154
testis_male_adult_37_years	chr11	16408855	16408868	16408855	-	High_confidence	45	45	70	3.128712	5.318865	chr11	16408706	16408831	SINE|Alu|FLAM_A	-	chr11	15966448	16408884	SOX6|NM_001145811.1	-	15966448,15986203,15988996,16014941,16046513,16049712,16055751,16097608,16111802,16183885,16186782,16234581,16318445,16341011,16408697	15973112,15986420,15989230,16015050,16046701,16049938,16055901,16097688,16111923,16183954,16186955,16234671,16318653,16341252,16408884	0.785714
testis_male_adult_37_years	chr12	114009206	114009241	114009240	+	RAMPAGE_only	4	4	16	0.715134	3.702820	chr12	114009085	114009379	LINE|L2|L2c	-	chr12	114011526	114022488	STRG.209445.1	+	114011526,114021879	114012345,114022488	0.625000
testis_male_adult_37_years	chr3	78766695	78766711	78766695	-	RAMPAGE_only	3	3	10	0.446959	3.169925	chr3	78766412	78767271	LINE|L1|L1PBa	-	chr3	78598810	79018544	ROBO1|ENST00000467549.5	-	78598810,78600112,78606732,78614647,78617634,78627320,78631160,78633934,78635772,78639743,78646147,78651731,78657097,78659685,78661029,78661992,78667882,78668133,78668483,78670095,78685745,78688647,78693347,78714396,78717274,78717762,78746742,78938600,79018406	78598927,78600309,78607041,78614800,78618041,78627569,78631305,78634042,78635943,78639898,78646190,78651929,78657269,78659807,78661261,78662114,78668049,78668302,78668565,78670301,78685917,78688772,78693356,78714524,78717413,78717883,78746900,78938927,79018544	0.500000
testis_male_adult_37_years	chr5	38403439	38403471	38403439	-	High_confidence	7	7	20	0.893918	4.121928	chr5	38403268	38403777	DNA|TcMar-Tigger|Tigger7	-	chr5	38399813	38403413	EGFLAM-AS2|ENST00000512603.5	-	38399813,38401823,38403398	38400006,38402081,38403413	0.800000
testis_male_adult_37_years	chr6	4844312	4844351	4844332	+	RAMPAGE_only	18	27	108	4.827156	4.969068	chr6	4842264	4844381	LINE|L1|L1PB1	-	chr6	4836097	4954373	CDYL|ENST00000449732.6	+	4836097,4891712,4935514,4937564,4943545,4952265,4953897	4836308,4892379,4935771,4937737,4943756,4952409,4954373	0.888889
testis_male_adult_37_years	chr7	150041299	150041300	150041299	+	High_confidence	14	17	21	0.938614	3.721612	chr7	150040867	150041464	LTR|ERV1|HERVE-int	-	chr7	150041362	150045092	AC092666.1|ENST00000493400.1	+	150041362,150044749	150041461,150045092	0.761905
testis_male_adult_37_years	chr11	71999605	71999642	71999641	+	High_confidence	5	5	17	0.759830	3.175123	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	1.000000
testis_male_adult_37_years	chr9	107818679	107818680	107818679	+	High_confidence	257	257	301	13.453463	4.981990	chr9	107817611	107818993	LTR|ERV1|LTR12C	+	chr9	107818609	107820296	STRG.166064.1	+	107818609	107820296	0.976744
testis_male_adult_37_years	chrX	110445118	110445135	110445131	+	RAMPAGE_only	2	2	8	0.357567	2.521641	chrX	110445166	110445432	SINE|MIR|MIRb	+	chrX	110450564	110456326	RTL9|ENST00000540313.1	+	110450564,110455201	110454664,110456326	0.875000
testis_male_adult_37_years	chr19	17075199	17075217	17075199	-	High_confidence	5	5	12	0.536351	3.584963	chr19	17075045	17075226	SINE|MIR|MIRb	-	chr19	17049765	17075200	HAUS8|ENST00000593360.1	-	17049765,17052824,17055860,17058548,17058810,17059556,17059996,17062697,17069030,17073273	17050176,17052966,17056002,17058707,17058876,17059651,17060092,17062779,17069086,17075200	1.000000
testis_male_adult_37_years	chr2	232890990	232891042	232890999	-	High_confidence	27	33	123	5.497595	6.374391	chr2	232890857	232891264	LINE|L2|L2c	+	chr2	232878697	232890980	STRG.46440.3	-	232878697,232881145,232882185,232883310,232883980,232885279,232888032,232890933	232879679,232881250,232882265,232883466,232884144,232885369,232888107,232890980	0.894309
testis_male_adult_37_years	chr20	54059015	54059020	54059019	-	High_confidence	24	25	36	1.609052	4.829966	chr20	54058856	54059213	LTR|ERVL-MaLR|THE1D	-	chr20	53943537	54059020	BCAS1|NM_001323347.1	-	53943537,53953431,53975388,53985286,53995011,53995891,54028391,54058084,54058646,54058974	53944996,53953695,53975430,53985499,53995056,53996050,54028972,54058154,54058723,54059020	0.861111
testis_male_adult_37_years	chr14	102171380	102171386	102171385	+	High_confidence	12	12	19	0.849222	3.794653	chr14	102171255	102171417	SINE|Alu|AluJr	-	chr14	102171380	102208852	WDR20|ENST00000559708.5	+	102171380,102194937,102208602	102171510,102195120,102208852	0.736842
testis_male_adult_37_years	chr1	155478144	155478185	155478144	-	RAMPAGE_only	5	5	18	0.804526	3.969816	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.944444
testis_male_adult_37_years	chr7	128984180	128984198	128984197	-	RAMPAGE_only	3	3	12	0.536351	2.913977	chr7	128983986	128984151	LINE|L1|L1M5	-	chr7	128957222	129054883	TNPO3|ENST00000471166.1	-	128957222,128967279,128970147,128972425,128974867,128975818,128978982,128979970,128982247,128984167,128986728,128989960,128991998,128993806,128997388,129000428,129001058,129005015,129014978,129016982,129017956,129054650	128957315,128967392,128970315,128972582,128974962,128975935,128979123,128980031,128982324,128984259,128986920,128990202,128992090,128993914,128997535,129000567,129001234,129005159,129015135,129017056,129018157,129054883	0.916667
testis_male_adult_37_years	chr2	188606037	188606038	188606037	-	High_confidence	177	179	184	8.224044	5.949876	chr2	188605610	188606957	LTR|ERV1|LTR12C	-	chr2	188605167	188606238	STRG.41890.1	-	188605167	188606238	0.934783
testis_male_adult_37_years	chr4	4575871	4575891	4575871	-	High_confidence	3	3	12	0.536351	3.095795	chr4	4575763	4575859	SINE|MIR|MIR	-	chr4	4574062	4576235	STRG.69368.2	-	4574062	4576235	0.500000
testis_male_adult_37_years	chr17	8807360	8807361	8807360	-	RAMPAGE_only	5	6	8	0.357567	2.750000	chr17	8807289	8807664	LINE|L2|L2c	-	chr17	8802736	8867660	PIK3R6|ENST00000611951.4	-	8802736,8804040,8819082,8821845,8822586,8822995,8823386,8827171,8828111,8828566,8829705,8832888,8835272,8836546,8836790,8837802,8838295,8839613,8849781,8867528	8803429,8804153,8819198,8821936,8822657,8823086,8823497,8827294,8828190,8828990,8829792,8833045,8835456,8836716,8836923,8837871,8838655,8839697,8849885,8867660	0.625000
testis_male_adult_37_years	chr4	51423	51476	51423	-	High_confidence	6	6	24	1.072701	4.418296	chr4	50872	51445	LTR|ERV1|MER51C	+	chr4	49563	51500	STRG.68919.2	-	49563,50710	50638,51500	0.916667
testis_male_adult_37_years	chr9	86275163	86275173	86275165	-	RAMPAGE_only	5	10	20	0.893918	3.721612	chr9	86275028	86275195	SINE|MIR|MIRb	+	chr9	86265678	86282108	ISCA1|ENST00000311534.6	-	86265678,86272006,86274188,86281968	86266191,86272112,86274242,86282108	0.800000
testis_male_adult_37_years	chr7	140270973	140270974	140270973	-	High_confidence	75	75	77	3.441584	5.420429	chr7	140270658	140271868	LTR|ERV1|LTR12C	-	chr7	140259717	140270960	STRG.139320.2	-	140259717,140262648,140270658	140260460,140262766,140270960	0.792208
testis_male_adult_37_years	chr11	123796376	123796384	123796376	+	RAMPAGE_only	4	4	10	0.446959	2.725481	chr11	123795977	123796536	LTR|ERV1|MER51A	-	chr11	123797473	123819108	STRG.195493.2	+	123797473,123816990	123797992,123819108	0.700000
testis_male_adult_37_years	chr9	122406473	122406553	122406522	+	High_confidence	25	25	69	3.084017	4.781698	chr9	122405232	122406719	LTR|ERV1|LTR12C	-	chr9	122405859	122488071	STRG.167706.1	+	122405859,122415713,122416767,122447428,122448929,122468560,122475691,122487597	122406780,122415782,122416885,122447545,122449050,122469185,122475815,122488071	0.855072
testis_male_adult_37_years	chr20	18794054	18794086	18794077	+	High_confidence	129	129	360	16.090521	5.592028	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.969444
testis_male_adult_37_years	chr5	109451665	109451696	109451695	+	RAMPAGE_only	8	8	19	0.849222	3.947703	chr5	109451578	109451735	LTR|ERVL-MaLR|MLT1K	+	chr5	109455713	109455918	STRG.98747.1	+	109455713	109455918	0.631579
testis_male_adult_37_years	chr2	82325703	82325704	82325703	-	High_confidence	105	106	140	6.257425	5.761147	chr2	82325289	82326760	LTR|ERV1|LTR12C	-	chr2	82310380	82325766	STRG.32188.1	-	82310380,82323879,82325210	82310750,82323983,82325766	0.964286
testis_male_adult_37_years	chr17	52917865	52917893	52917892	+	RAMPAGE_only	2	2	7	0.312871	2.807355	chr17	52917632	52917911	LTR|ERVL-MaLR|THE1B	+	chr17	52862077	53214883	STRG.255074.1	+	52862077,52917867,52921946,52925032,52926804,53213906	52862471,52917938,52922049,52925183,52926894,53214883	0.714286
testis_male_adult_37_years	chr7	87476284	87476316	87476284	-	High_confidence	2	2	10	0.446959	3.121928	chr7	87476279	87476460	SINE|MIR|MIR3	-	chr7	87402058	87475848	ABCB4|ENST00000359206.8	-	87402058,87403134,87406287,87408036,87409235,87411892,87413616,87417311,87418536,87419997,87422120,87423905,87426749,87431403,87439666,87440198,87443318,87443662,87444861,87447033,87449967,87451622,87452943,87454534,87462757,87472620,87475385,87475770	87402302,87403281,87406494,87408234,87409392,87412033,87413717,87417515,87418620,87420075,87422225,87424052,87426920,87431565,87439837,87440402,87443444,87443773,87444975,87447205,87450092,87451794,87453135,87454592,87462908,87472675,87475471,87475848	0.900000
testis_male_adult_37_years	chr7	150036604	150036614	150036613	+	RAMPAGE_only	5	6	9	0.402263	3.000000	chr7	150036214	150036820	LTR|ERV1|HERVE-int	-	chr7	150034246	150045092	STRG.140697.6	+	150034246,150041220	150040472,150045092	0.888889
testis_male_adult_37_years	chr3	9362819	9362862	9362861	+	High_confidence	7	7	24	1.072701	3.481715	chr3	9362687	9362878	SINE|MIR|MIRb	+	chr3	9362841	9385702	THUMPD3|ENST00000452837.6	+	9362841,9365015,9366907,9371059,9374515,9377818,9380502,9383198,9384211,9384523	9363127,9365320,9366985,9371536,9374646,9377888,9380618,9383309,9384335,9385702	0.916667
testis_male_adult_37_years	chr7	124086177	124086179	124086178	+	RAMPAGE_only	3	5	7	0.312871	2.521641	chr7	124085975	124086341	LTR|ERVL-MaLR|THE1A	+	chr7	124088825	124092041	STRG.137712.4	+	124088825	124092041	0.714286
testis_male_adult_37_years	chr4	86780452	86780459	86780452	+	RAMPAGE_only	3	3	8	0.357567	2.807355	chr4	86780459	86780984	LINE|L1|L1ME1	+	chr4	86635251	86815149	PTPN13|ENST00000511467.1	+	86635251,86672364,86686709,86689004,86693586,86701240,86716529,86717023,86722211,86732399,86732591,86734302,86734736,86735593,86741633,86744965,86750469,86751026,86753008,86758259,86758677,86758941,86762726,86764592,86765394,86766431,86767816,86769768,86770100,86771170,86772777,86774372,86775170,86775441,86780401,86782200,86784464,86785230,86785847,86796873,86799100,86803708,86805278,86807559,86809768,86811045,86814455	86635371,86672543,86686775,86689190,86693674,86701801,86716625,86717117,86722434,86732474,86732766,86734456,86734875,86735746,86741816,86745128,86750887,86751124,86753065,86758349,86758785,86759073,86763190,86764739,86765488,86766517,86767976,86769983,86770199,86771535,86772958,86774531,86775342,86775652,86780472,86782262,86784558,86785368,86785936,86796929,86799204,86803857,86805369,86807897,86809984,86811108,86815149	0.875000
testis_male_adult_37_years	chr8	140663056	140663103	140663056	-	High_confidence	6	10	30	1.340877	4.415061	chr8	140662725	140663367	LINE|L1|L1MC4	+	chr8	140659486	140663084	PTK2|ENST00000523435.1	-	140659486,140662647	140659678,140663084	0.866667
testis_male_adult_37_years	chr4	121038983	121038984	121038983	-	High_confidence	7	7	7	0.312871	2.807355	chr4	121038704	121039000	SINE|Alu|AluJb	+	chr4	121037083	121038984	NDNF|ENST00000506900.1	-	121037083,121037961,121038861	121037657,121038181,121038984	1.000000
testis_male_adult_37_years	chr11	64242486	64242547	64242546	+	High_confidence	9	9	65	2.905233	5.201074	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
testis_male_adult_37_years	chr14	66111556	66111612	66111609	+	High_confidence	9	9	46	2.056011	4.789417	chr14	66111512	66111769	LTR|ERVL-MaLR|MLT1K	-	chr14	66111630	66125847	LINC02290|ENST00000557723.5	+	66111630,66117907,66123660,66125768	66111771,66118054,66123824,66125847	0.608696
testis_male_adult_37_years	chr22	40433069	40433087	40433069	-	RAMPAGE_only	5	6	21	0.938614	4.106603	chr22	40432994	40433145	LTR|ERVL|MER21C	+	chr22	40410281	40436310	MRTFA|ENST00000614754.4	-	40410281,40416975,40417340,40418373,40420404,40420846,40423535,40424205,40429605,40431404,40435498,40436300	40411907,40417046,40417493,40419384,40420576,40421100,40423685,40424381,40429767,40431480,40435554,40436310	0.714286
testis_male_adult_37_years	chr3	151928153	151928190	151928177	-	High_confidence	20	20	58	2.592362	5.299972	chr3	151927972	151929469	LTR|ERV1|LTR12C	+	chr3	151751178	151928175	AADACL2-AS1|NR_110202.1	-	151751178,151755071,151774605,151927856	151751511,151755131,151774665,151928175	0.689655
testis_male_adult_37_years	chr12	97512703	97512704	97512703	+	High_confidence	8	9	10	0.446959	2.921928	chr12	97511941	97513302	LTR|ERV1|LTR12C	-	chr12	97512426	97513876	STRG.207986.1	+	97512426	97513876	0.500000
testis_male_adult_37_years	chr20	3795750	3795789	3795750	+	High_confidence	34	35	155	6.927863	6.158869	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
testis_male_adult_37_years	chr11	65436520	65436739	65436738	+	RAMPAGE_only	10	10	171	7.642997	4.468357	chr11	65436611	65437060	LINE|L1|L1ME4b	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.994152
testis_male_adult_37_years	chr4	178038601	178038645	178038644	-	High_confidence	5	5	23	1.028006	4.142915	chr4	178038539	178038737	LTR|ERVL-MaLR|MSTD	-	chr4	178021220	178038603	STRG.86963.1	-	178021220,178038392	178021503,178038603	0.826087
testis_male_adult_37_years	chr3	15754284	15754307	15754306	-	RAMPAGE_only	6	6	12	0.536351	3.251629	chr3	15754093	15754585	DNA|TcMar-Tigger|Tigger7	+	chr3	15721100	15756547	ANKRD28|ENST00000476472.5	-	15721100,15724381,15735409,15737032,15751749,15756483	15721127,15724524,15735497,15737233,15751820,15756547	0.666667
testis_male_adult_37_years	chr8	83403690	83403701	83403700	+	High_confidence	5	5	9	0.402263	2.750000	chr8	83402757	83404051	LTR|ERV1|LTR12C	+	chr8	83403757	83408900	LINC01419|NR_122034.1	+	83403757,83407691	83404069,83408900	0.888889
testis_male_adult_37_years	chr16	66408519	66408553	66408519	+	High_confidence	19	23	90	4.022630	5.605127	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.911111
testis_male_adult_37_years	chr4	1241443	1241446	1241443	-	RAMPAGE_only	3	3	7	0.312871	2.584963	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1248740	CTBP1|ENST00000513420.1	-	1225437,1228198,1238182,1241324,1248660	1225566,1228343,1238337,1241519,1248740	0.857143
testis_male_adult_37_years	chr4	162740491	162740492	162740491	+	High_confidence	155	156	218	9.743704	5.353776	chr4	162739358	162740906	LTR|ERV1|LTR12C	+	chr4	162740667	162742048	AC005150.1|ENST00000512831.1	+	162740667,162741668	162740915,162742048	0.958716
testis_male_adult_37_years	chr3	102163671	102163695	102163694	+	High_confidence	2	2	8	0.357567	2.807355	chr3	102163590	102163873	DNA|hAT-Tip100|MamTip2	+	chr3	102163704	102164871	LOC101929411|NR_135549.1	+	102163704,102164673	102163975,102164871	0.875000
testis_male_adult_37_years	chr6	4725652	4725678	4725652	+	High_confidence	2	2	19	0.849222	3.503258	chr6	4724469	4725869	LTR|ERV1|LTR12C	-	chr6	4725151	4892347	STRG.107420.7	+	4725151,4733158,4734761,4891712	4725880,4733248,4734844,4892347	0.842105
testis_male_adult_37_years	chr2	55268588	55268605	55268588	-	High_confidence	3	3	14	0.625742	3.026987	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	0.928571
testis_male_adult_37_years	chr14	94065880	94065901	94065900	-	RAMPAGE_only	5	6	16	0.715134	3.750000	chr14	94065490	94071367	LINE|L1|L1PB1	+	chr14	94050937	94081183	DDX24|ENST00000330836.9	-	94050937,94052997,94054995,94057821,94060097,94060912,94062096,94079024,94079234,94081118	94051462,94053127,94055184,94057897,94060613,94061066,94062621,94079069,94079747,94081183	0.937500
testis_male_adult_37_years	chrX	129448622	129448667	129448622	-	RAMPAGE_only	2	2	8	0.357567	2.521641	chrX	129448615	129448966	LINE|L1|L1MD2	+	chrX	129446845	129523405	SMARCA1|ENST00000371121.4	-	129446845,129448332,129465519,129465843,129468772,129471203,129480700,129481074,129487017,129488936,129490059,129491940,129493039,129496749,129497844,129499731,129504733,129506079,129507940,129511803,129515686,129515893,129516330,129518360,129523196	129447233,129448443,129465732,129465962,129468905,129471326,129480814,129481185,129487137,129489085,129490192,129492093,129493075,129496871,129498071,129499841,129504802,129506211,129508096,129511983,129515787,129515994,129516497,129518447,129523405	0.750000
testis_male_adult_37_years	chr9	20658312	20658347	20658338	+	High_confidence	11	11	44	1.966619	4.879664	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.636364
testis_male_adult_37_years	chr20	5489142	5489202	5489187	-	High_confidence	5	7	28	1.251485	4.593069	chr20	5489118	5490085	LTR|ERVL|ERVL-E-int	-	chr20	5485138	5489305	STRG.273044.1	-	5485138,5488941	5486264,5489305	0.750000
testis_male_adult_37_years	chr14	92819535	92819552	92819535	+	RAMPAGE_only	2	2	12	0.536351	3.459432	chr14	92819369	92819643	SINE|Alu|AluJr	+	chr14	92794330	92841874	STRG.230650.1	+	92794330,92797407,92806735,92809299,92810253,92811550,92816250,92819707,92824545,92833121,92835558,92837385,92839365,92839991	92794456,92797981,92806963,92809519,92810377,92811754,92816421,92819836,92824644,92833347,92835664,92837449,92839623,92841874	0.916667
testis_male_adult_37_years	chrX	107245219	107245348	107245311	-	RAMPAGE_only	32	44	154	6.883167	5.480636	chrX	107244866	107245402	DNA|MULE-MuDR|Ricksha_c	-	chrX	107123426	107206440	NUP62CL|NR_033676.1	-	107123426,107147742,107153171,107153453,107167648,107175088,107206272	107124332,107147809,107153306,107153503,107167784,107175193,107206440	0.688312
testis_male_adult_37_years	chr6	116001505	116001506	116001505	-	RAMPAGE_only	16	16	20	0.893918	3.784184	chr6	116001390	116001850	LTR|ERV1|MER101	+	chr6	115931148	116060758	FRK|ENST00000606080.1	-	115931148,115943019,115944243,115956451,115967550,115968575,116003876,116059967	115942625,115943185,115944425,115956610,115967719,115968739,116003998,116060758	0.950000
testis_male_adult_37_years	chr11	63616882	63616899	63616887	-	High_confidence	4	4	12	0.536351	3.251629	chr11	63616701	63616995	SINE|Alu|AluYe5	+	chr11	63574849	63616883	STRG.188169.2	-	63574849,63590099,63598060,63613999,63616586	63575046,63590368,63598163,63614068,63616883	1.000000
testis_male_adult_37_years	chr14	24211920	24211974	24211973	-	High_confidence	5	5	10	0.446959	3.121928	chr14	24211871	24212083	SINE|MIR|MIR	-	chr14	24210664	24212109	CHMP4A|ENST00000552620.1	-	24210664,24211410,24211679	24210768,24211592,24212109	1.000000
testis_male_adult_37_years	chr2	95826603	95826628	95826603	-	High_confidence	3	3	16	0.715134	3.906891	chr2	95824349	95826979	LINE|L1|L1PA10	-	chr2	95807051	95826981	LINC00342|NR_103734.1	-	95807051,95814049,95824200	95807302,95814145,95826981	0.937500
testis_male_adult_37_years	chr17	67224082	67224089	67224088	-	RAMPAGE_only	4	4	11	0.491655	3.459432	chr17	67223950	67224506	LTR|ERVL-MaLR|MLT1K	+	chr17	67077928	67239468	HELZ|ENST00000579953.5	-	67077928,67086828,67107168,67108491,67109115,67114323,67120404,67122969,67123962,67128494,67135969,67137930,67145742,67148568,67149866,67151045,67160260,67160896,67166477,67167462,67178658,67188318,67189588,67190156,67193966,67195418,67201128,67203318,67215898,67218594,67239432	67078586,67087081,67107685,67108726,67109686,67114403,67120612,67123160,67124014,67128855,67136198,67138114,67145890,67148714,67149985,67151224,67160365,67161076,67166608,67167796,67178926,67188616,67189696,67190355,67194042,67195470,67201185,67203443,67215935,67218822,67239468	1.000000
testis_male_adult_37_years	chr4	171299067	171299110	171299109	+	High_confidence	75	76	122	5.452899	4.518382	chr4	171298092	171299531	LTR|ERV1|LTR12C	+	chr4	171299011	171300916	STRG.85935.1	+	171299011	171300916	0.991803
testis_male_adult_37_years	chr8	90620076	90620079	90620076	-	RAMPAGE_only	5	5	10	0.446959	3.121928	chr8	90620041	90620176	LINE|L1|L1M5	-	chr8	90530347	90606924	STRG.151036.3	-	90530347,90554350,90605767	90534626,90554666,90606924	0.600000
testis_male_adult_37_years	chr13	58715026	58715027	58715026	+	High_confidence	152	154	165	7.374822	5.481228	chr13	58713900	58715340	LTR|ERV1|LTR12C	+	chr13	58715043	58717880	STRG.215647.1	+	58715043,58717195	58715546,58717880	0.939394
testis_male_adult_37_years	chr20	44450569	44450601	44450584	-	High_confidence	18	18	49	2.190099	4.703525	chr20	44450509	44450885	LTR|ERVL|LTR33	+	chr20	44448776	44450557	LINC01430|NR_109893.1	-	44448776,44449959,44450536	44449054,44450090,44450557	0.836735
testis_male_adult_37_years	chr9	89479889	89479890	89479889	-	High_confidence	1008	1011	1064	47.556429	5.482763	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89362238	89479890	SEMA4D|ENST00000537934.5	-	89362238,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89418362,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89418437,89455953,89479890	0.917293
testis_male_adult_37_years	chr9	108885871	108885872	108885871	-	RAMPAGE_only	9	11	12	0.536351	3.095795	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108879460	108889684	ELP1|ENST00000467959.1	-	108879460,108880051,108881704,108882124,108889331,108889644	108879557,108880165,108881765,108882187,108889393,108889684	0.583333
testis_male_adult_37_years	chr17	16791845	16791861	16791845	+	High_confidence	2	2	7	0.312871	2.584963	chr17	16791737	16791860	SINE|MIR|MIRb	-	chr17	16791976	16800128	USP32P1|ENST00000456071.5	+	16791976,16796042,16798241,16799950	16792053,16796234,16798530,16800128	0.571429
testis_male_adult_37_years	chr19	40864860	40864867	40864866	+	RAMPAGE_only	5	6	12	0.536351	3.584963	chr19	40864581	40865031	LTR|ERV1|LTR15	+	chr19	40890825	40900508	CYP2G1P|NR_040249.1	+	40890825,40893673,40898137,40898436,40899973	40892152,40893992,40898325,40898578,40900508	0.500000
testis_male_adult_37_years	chr7	105399356	105399357	105399356	-	High_confidence	703	766	906	40.494478	5.577185	chr7	105399077	105399551	LTR|ERVL-MaLR|MLT1F1	-	chr7	105203626	105399308	SRPK2|ENST00000462282.5	-	105203626,105206400,105268805,105399155	105203785,105206529,105268869,105399308	0.886313
testis_male_adult_37_years	chr5	34684215	34684257	34684256	+	High_confidence	9	9	22	0.983310	3.725651	chr5	34684242	34684399	DNA|hAT-Charlie|MER5A	-	chr5	34684506	34832612	RAI14|NM_001145525.1	+	34684506,34685031,34686871,34688067,34757467,34795938,34803711,34807799,34808583,34811011,34811766,34812179,34813573,34814582,34818796,34821731,34822955,34826329,34829731,34830687	34684775,34685081,34686955,34688248,34757598,34796027,34803776,34807857,34808654,34811118,34811945,34812208,34813660,34814669,34818851,34821850,34824491,34826479,34829797,34832612	0.954545
testis_male_adult_37_years	chr8	125750257	125750261	125750257	-	High_confidence	11	18	30	1.340877	4.423252	chr8	125750117	125750579	LTR|ERV1|MER51A	+	chr8	125749054	125750241	AC016074.1|ENST00000518339.1	-	125749054,125749899	125749348,125750241	0.900000
testis_male_adult_37_years	chr18	5081177	5081184	5081177	+	High_confidence	4	4	8	0.357567	2.807355	chr18	5081006	5081726	LINE|L2|L2c	-	chr18	5081181	5085477	LINC01892|ENST00000583985.1	+	5081181,5084996	5081240,5085477	0.500000
testis_male_adult_37_years	chr8	90606062	90606065	90606062	-	High_confidence	205	205	496	22.169162	5.761887	chr8	90605768	90606660	LTR|ERV1|LTR12D	-	chr8	90592774	90606063	LINC01030|NR_104062.1	-	90592774,90593831,90605767	90593103,90593971,90606063	0.814516
testis_male_adult_37_years	chr20	48563655	48563672	48563655	-	High_confidence	5	6	14	0.625742	3.546594	chr20	48563314	48564627	LTR|ERV1|LTR12C	-	chr20	48552161	48563628	STRG.276473.4	-	48552161	48563628	0.857143
testis_male_adult_37_years	chr11	21262566	21262601	21262600	-	High_confidence	16	16	32	1.430269	4.208409	chr11	21261754	21263996	LINE|L1|HAL1	-	chr11	21260060	21262570	AC090857.2|ENST00000526362.1	-	21260060,21262537	21260750,21262570	0.875000
testis_male_adult_37_years	chr3	107878064	107878079	107878078	-	High_confidence	20	20	100	4.469589	6.088854	chr3	107877786	107878371	LTR|ERVL-MaLR|MLT1G1	+	chr3	107855163	107878077	LINC00635|ENST00000601385.5	-	107855163,107857079,107867310,107877312,107877901	107855229,107857202,107867425,107877497,107878077	0.540000
testis_male_adult_37_years	chr2	70983850	70983894	70983885	-	High_confidence	8	8	46	2.056011	4.452166	chr2	70983824	70983877	LTR|ERVL-MaLR|MLT1L	-	chr2	70983169	70983876	STRG.31196.2	-	70983169	70983876	0.913043
testis_male_adult_37_years	chr9	132269437	132269439	132269438	-	RAMPAGE_only	3	5	7	0.312871	2.521641	chr9	132269273	132269389	SINE|MIR|MIR	-	chr9	132261355	132275382	SETX|ENST00000477049.1	-	132261355,132266126,132269614,132271709,132275255	132264985,132266249,132269702,132271808,132275382	1.000000
testis_male_adult_37_years	chr11	77571158	77571206	77571158	+	High_confidence	15	16	71	3.173408	4.924938	chr11	77570921	77571455	LTR|ERV1|LTR61	+	chr11	77571166	77575986	STRG.190096.1	+	77571166,77571514,77574210	77571310,77571685,77575986	0.957746
testis_male_adult_37_years	chr2	113704173	113704174	113704173	-	High_confidence	120	121	136	6.078641	5.842735	chr2	113703868	113704969	LTR|ERV1|LTR12E	-	chr2	113677701	113704078	AC017074.1|ENST00000424612.1	-	113677701,113688160,113703696	113677783,113688257,113704078	0.897059
testis_male_adult_37_years	chr6	89638798	89638824	89638823	+	High_confidence	24	24	73	3.262800	4.495258	chr6	89638870	89638965	SINE|MIR|MIRb	+	chr6	89638820	89639305	STRG.116843.1	+	89638820	89639305	0.753425
testis_male_adult_37_years	chr14	72422125	72422131	72422129	+	RAMPAGE_only	29	42	64	2.860537	5.490408	chr14	72421935	72422277	LTR|ERVL-MaLR|THE1B	+	chr14	72420978	72474069	RGS6|ENST00000553690.5	+	72420978,72421587,72454527,72458270,72459631,72464693,72465757,72470006,72472871,72473885	72421185,72421724,72454578,72458377,72459683,72464717,72465822,72470083,72472953,72474069	0.593750
testis_male_adult_37_years	chr19	58306115	58306147	58306146	+	High_confidence	3	3	8	0.357567	2.750000	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305373	58315202	ERVK3-1|ENST00000427361.5	+	58305373,58306087,58312196,58314747	58305445,58306216,58312462,58315202	0.625000
testis_male_adult_37_years	chr3	59051646	59051647	59051646	+	High_confidence	68	68	72	3.218104	4.554303	chr3	59050675	59052063	LTR|ERV1|LTR12C	+	chr3	59051017	59054298	STRG.54334.1	+	59051017	59054298	0.902778
testis_male_adult_37_years	chr14	29150935	29150951	29150947	+	High_confidence	32	36	76	3.396888	5.356473	chr14	29150688	29151376	LTR|ERV1|LTR12_	+	chr14	29150166	29153103	STRG.222937.1	+	29150166	29153103	0.947368
testis_male_adult_37_years	chr19	13672683	13672748	13672747	-	High_confidence	7	7	37	1.653748	4.800432	chr19	13672633	13672814	LTR|ERVL-MaLR|MLT1J	+	chr19	13671045	13672738	STRG.266923.1	-	13671045,13672588	13671699,13672738	0.648649
testis_male_adult_37_years	chr3	125971121	125971138	125971121	+	RAMPAGE_only	1	2	7	0.312871	2.584963	chr3	125970793	125971346	LINE|L1|L1MEd	-	chr3	125969238	125977993	ROPN1B|ENST00000510450.1	+	125969238,125972042,125975562,125977003	125969400,125972170,125975680,125977993	0.714286
testis_male_adult_37_years	chr10	37076828	37076832	37076828	+	High_confidence	31	31	55	2.458274	4.798831	chr10	37075945	37077056	LTR|ERV1|LTR12C	+	chr10	37076834	37079389	STRG.172862.1	+	37076834	37079389	0.854545
testis_male_adult_37_years	chr1	51326028	51326077	51326068	+	High_confidence	27	29	85	3.799151	5.056828	chr1	51326010	51326475	LINE|L2|L2b	-	chr1	51326034	51328321	STRG.5348.1	+	51326034,51328209	51327659,51328321	0.988235
testis_male_adult_37_years	chr12	127983862	127983863	127983862	-	High_confidence	71	77	92	4.112022	5.089875	chr12	127983198	127984510	LTR|ERV1|LTR12C	+	chr12	127883988	127983891	LINC00508|NR_126452.2	-	127883988,127940573,127983066,127983801	127885105,127940735,127983125,127983891	0.760870
testis_male_adult_37_years	chr8	31162712	31162745	31162744	+	RAMPAGE_only	8	14	33	1.474964	4.625000	chr8	31161866	31162817	DNA|TcMar-Tigger|Tigger3b	-	chr8	31087643	31173763	WRN|ENST00000521620.5	+	31087643,31088889,31090833,31091829,31096767,31100848,31111614,31116353,31120242,31124521,31124907,31132364,31141429,31141680,31142625,31143549,31147052,31147363,31150340,31154623,31157367,31167021,31172994	31087920,31088965,31090942,31091898,31096850,31100955,31111799,31116528,31120424,31124623,31125000,31132506,31141600,31141775,31142701,31143623,31147128,31147476,31150455,31154755,31157530,31167230,31173763	0.878788
testis_male_adult_37_years	chr17	70128879	70128938	70128879	-	High_confidence	77	77	116	5.184723	5.232589	chr17	70128761	70129144	LTR|ERV1|MER48	-	chr17	70017323	70128859	AC005208.1|ENST00000435112.5	-	70017323,70019487,70022078,70128068,70128642	70017392,70019592,70022197,70128157,70128859	0.551724
testis_male_adult_37_years	chr18	9342969	9342977	9342976	+	RAMPAGE_only	10	10	18	0.804526	3.454822	chr18	9342635	9343159	LINE|L1|HAL1	-	chr18	9334849	9400817	STRG.259367.2	+	9334849,9337192,9341114,9359971,9396279,9399345	9334920,9337352,9341275,9360071,9396546,9400817	0.888889
testis_male_adult_37_years	chr2	135605930	135605952	135605935	+	RAMPAGE_only	9	9	26	1.162093	4.168296	chr2	135605676	135605983	SINE|Alu|AluSx	-	chr2	135604855	135631938	STRG.36985.8	+	135604855,135616667,135622653,135631717,135631860	135616193,135621608,135622732,135631777,135631938	0.884615
testis_male_adult_37_years	chr22	21001668	21001694	21001693	-	High_confidence	3	3	14	0.625742	3.392747	chr22	21001557	21001648	SINE|MIR|MIR	-	chr22	20999103	21001742	THAP7|ENST00000498406.1	-	20999103,21000646,21001255	21000432,21000787,21001742	0.928571
testis_male_adult_37_years	chr12	103802534	103802584	103802534	+	High_confidence	7	9	39	1.743140	5.080274	chr12	103802465	103802795	LTR|ERVL-MaLR|MLT1K	+	chr12	103802574	103814570	STRG.208641.1	+	103802574,103814164	103803034,103814570	0.820513
testis_male_adult_37_years	chr3	149057024	149057025	149057024	-	RAMPAGE_only	5	5	8	0.357567	3.000000	chr3	149056827	149057136	SINE|Alu|AluYe5	+	chr3	149050269	149060800	HLTF|ENST00000493881.1	-	149050269,149052044,149055302,149059717,149060642,149060778	149050375,149052144,149055400,149059807,149060687,149060800	0.625000
testis_male_adult_37_years	chr15	66524523	66524552	66524523	-	High_confidence	18	23	36	1.609052	4.793345	chr15	66524384	66524562	LINE|L2|L2b	+	chr15	66499322	66524532	RPL4|ENST00000568588.5	-	66499322,66500055,66500292,66500948,66501374,66501787,66502611,66503057,66503357,66505327,66524454	66499652,66500176,66500376,66501105,66501504,66501912,66502750,66503164,66503529,66505748,66524532	0.666667
testis_male_adult_37_years	chr20	45833293	45833294	45833293	-	High_confidence	18	21	24	1.072701	3.969002	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.916667
testis_male_adult_37_years	chr15	31507840	31507877	31507866	+	High_confidence	4	7	21	0.938614	3.422578	chr15	31507443	31507902	LTR|ERV1|LTR12F	-	chr15	31507846	31508840	STRG.233187.1	+	31507846	31508840	0.904762
testis_male_adult_37_years	chr20	9333340	9333359	9333340	+	RAMPAGE_only	2	2	10	0.446959	3.121928	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9307799	9480816	PLCB4|NM_000933.3	+	9307799,9337125,9338007,9338893,9362895,9365460,9371213,9372302,9373046,9380053,9384200,9387462,9389878,9390530,9393587,9395522,9401489,9407916,9408632,9409056,9411036,9419806,9421296,9423747,9435559,9437001,9443980,9444177,9453346,9457413,9459634,9468570,9472789,9473278,9476716,9478920	9307898,9337206,9338067,9339037,9362975,9365514,9371295,9372403,9373104,9380162,9384411,9387556,9389958,9390615,9393678,9395618,9401590,9408058,9408717,9409181,9411088,9419909,9421461,9423952,9435648,9437152,9444030,9444243,9453462,9457489,9459810,9468672,9472847,9473365,9476753,9480816	0.600000
testis_male_adult_37_years	chr2	229958999	229959000	229958999	-	RAMPAGE_only	5	5	8	0.357567	2.750000	chr2	229958839	229959057	SINE|MIR|MIRb	-	chr2	229859210	229923239	TRIP12|ENST00000435716.5	-	229859210,229879981,229923147	229859574,229880128,229923239	0.625000
testis_male_adult_37_years	chr10	96133625	96133645	96133644	+	RAMPAGE_only	3	4	8	0.357567	3.000000	chr10	96133568	96133657	DNA|TcMar-Tigger|Tigger12A	-	chr10	96130055	96163752	ZNF518A|ENST00000624776.3	+	96130055,96132585,96133555,96155325,96155923,96156196	96130118,96132670,96133648,96155398,96156047,96163752	0.750000
testis_male_adult_37_years	chr17	44369792	44369793	44369792	+	High_confidence	12	12	12	0.536351	3.251629	chr17	44368639	44370209	LTR|ERV1|LTR12C	+	chr17	44369751	44370394	STRG.254303.1	+	44369751	44370394	0.916667
testis_male_adult_37_years	chr1	6208681	6208682	6208681	-	High_confidence	97	100	103	4.603677	3.902308	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.941748
testis_male_adult_37_years	chr1	39779794	39779829	39779794	-	RAMPAGE_only	3	3	15	0.670438	3.773557	chr1	39779789	39780252	LTR|ERVL-MaLR|MLT1F1	-	chr1	39757181	39788861	BMP8B|ENST00000372827.7	-	39757181,39763091,39763711,39764622,39774307,39774848,39788151	39760568,39763202,39763791,39764817,39774456,39775038,39788861	0.666667
testis_male_adult_37_years	chr16	58749666	58749670	58749669	+	High_confidence	206	208	389	17.386702	5.192691	chr16	58748675	58750043	LTR|ERV1|LTR12C	+	chr16	58749676	58862081	AC092378.1|ENST00000565722.1	+	58749676,58862034	58750113,58862081	0.917738
testis_male_adult_37_years	chr4	128098272	128098327	128098326	+	RAMPAGE_only	9	9	25	1.117397	3.907268	chr4	128098347	128098409	LINE|L1|L1MC2	+	chr4	128077840	128122352	LARP1B|ENST00000507377.1	+	128077840,128082164,128091000,128091346,128098185,128107138,128114569,128121825	128077962,128082305,128091144,128091512,128098330,128107313,128114742,128122352	0.960000
testis_male_adult_37_years	chr3	12883665	12883666	12883665	+	High_confidence	299	300	328	14.660252	5.764102	chr3	12882707	12883979	LTR|ERV1|LTR12C	+	chr3	12883660	12892462	STRG.49600.3	+	12883660	12892462	0.948171
testis_male_adult_37_years	chr17	77178752	77178799	77178798	+	RAMPAGE_only	3	3	13	0.581047	3.418296	chr17	77178526	77178851	DNA|hAT-Charlie|MER1B	-	chr17	77181036	77194733	SEC14L1|ENST00000588616.6	+	77181036,77190802,77191180,77193420,77194676	77181146,77190952,77191312,77193549,77194733	0.846154
testis_male_adult_37_years	chr15	33128893	33128895	33128894	-	High_confidence	9	13	15	0.670438	3.521641	chr15	33128552	33129144	LTR|ERV1|LTR12_	-	chr15	32765544	33128861	STRG.233487.2	-	32765544,32776834,32798803,32804280,32857014,32888171,32898833,32899978,32901910,32908489,32910473,32926173,32964106,32968713,33008013,33064956,33088798,33128549	32774354,32776919,32798953,32804332,32857107,32888292,32898893,32900125,32902040,32908578,32910535,32926261,32964257,32969477,33008075,33065074,33088974,33128861	0.933333
testis_male_adult_37_years	chr11	41714533	41714562	41714561	+	High_confidence	43	48	77	3.441584	6.075165	chr11	41714444	41714603	LTR|ERVL-MaLR|MLT1G1	+	chr11	41714533	41857733	LINC01499|ENST00000648000.1	+	41714533,41734671,41736496,41786642,41787283,41808246,41808966,41821292,41826153,41850116,41850462,41851589,41855761,41856327,41857631	41714603,41734776,41736634,41786719,41787436,41808326,41809083,41821366,41826243,41850310,41850619,41851642,41856057,41856554,41857733	0.558442
testis_male_adult_37_years	chr15	92710707	92710710	92710709	-	High_confidence	8	14	18	0.804526	3.572431	chr15	92710299	92711583	LTR|ERV1|LTR12C	-	chr15	92709481	92710832	STRG.239830.4	-	92709481	92710832	0.888889
testis_male_adult_37_years	chr6	2768837	2768879	2768837	+	High_confidence	2	2	7	0.312871	2.807355	chr6	2768884	2768965	SINE|MIR|MIRc	+	chr6	2768772	2785745	WRNIP1|ENST00000380764.1	+	2768772,2770119,2779262,2783405,2784323,2785006	2768882,2770361,2779492,2783561,2784403,2785745	0.857143
testis_male_adult_37_years	chr15	75198865	75198935	75198916	+	High_confidence	30	31	178	7.955869	6.500333	chr15	75198623	75199037	LTR|ERV1|MER51A	-	chr15	75198891	75212169	C15orf39|ENST00000360639.6	+	75198891,75205998,75210748	75199161,75208824,75212169	0.825843
testis_male_adult_37_years	chr19	17197815	17197857	17197828	+	High_confidence	4	4	18	0.804526	4.058814	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	1.000000
testis_male_adult_37_years	chr20	16731004	16731019	16731004	+	High_confidence	14	15	27	1.206789	4.282484	chr20	16730915	16731143	SINE|MIR|MIR	-	chr20	16730028	16732468	SNRPB2|ENST00000478522.1	+	16730028,16731667,16732163	16730164,16731766,16732468	0.740741
testis_male_adult_37_years	chr5	67490685	67490719	67490718	-	RAMPAGE_only	3	3	11	0.491655	2.921928	chr5	67490503	67490858	LTR|ERVL-MaLR|THE1A	-	chr5	67465034	67475592	AC079467.1|ENST00000515184.1	-	67465034,67466872,67467905,67475414	67465327,67466938,67468053,67475592	0.636364
testis_male_adult_37_years	chr4	151353443	151353447	151353446	-	High_confidence	23	24	40	1.787836	4.406821	chr4	151352921	151353772	LTR|ERV1|LTR12	-	chr4	151333774	151353224	AC104819.3|ENST00000603264.1	-	151333774,151352899	151333989,151353224	0.575000
testis_male_adult_37_years	chr2	202136643	202136659	202136643	+	High_confidence	6	6	17	0.759830	3.750000	chr2	202136035	202136887	LTR|ERV1|LTR12D	-	chr2	202136041	202205131	STRG.43545.2	+	202136041,202138431,202154672,202165283,202184752,202186932,202188151,202190173,202193300,202194189,202196799,202202428,202204997	202136852,202138508,202154810,202165356,202184843,202187098,202188266,202190493,202193503,202194362,202197019,202202587,202205131	0.882353
testis_male_adult_37_years	chr12	18714748	18714773	18714772	-	High_confidence	4	4	10	0.446959	2.846439	chr12	18714673	18714885	DNA|hAT-Charlie|MER20	+	chr12	18683181	18714771	PLCZ1|ENST00000538330.5	-	18683181,18684129,18688088,18694909,18696149,18699793,18701500,18705165,18712841,18713736,18714655	18683324,18684279,18688218,18695079,18696266,18699950,18701776,18705284,18712986,18713825,18714771	0.800000
testis_male_adult_37_years	chr17	4143196	4143215	4143199	+	High_confidence	102	103	250	11.173973	6.356003	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.948000
testis_male_adult_37_years	chr12	110079966	110080021	110079978	+	High_confidence	4	7	27	1.206789	4.213661	chr12	110079898	110079991	LTR|ERVL-MaLR|MLT1O	-	chr12	110079968	110080689	STRG.209386.1	+	110079968	110080689	0.814815
testis_male_adult_37_years	chr2	61408835	61408885	61408855	-	RAMPAGE_only	4	4	13	0.581047	3.418296	chr2	61408613	61408916	SINE|Alu|AluSz	+	chr2	61187454	61470714	USP34|NM_014709.3	-	61187454,61188909,61190270,61190517,61192900,61203139,61204255,61204496,61206016,61206759,61208898,61211771,61214059,61220309,61221501,61222618,61223059,61223247,61227066,61228644,61228826,61229547,61232451,61235844,61236025,61236160,61236324,61241559,61241765,61245209,61246323,61248510,61256383,61256872,61257051,61257203,61259710,61265396,61265983,61278164,61278387,61280243,61281089,61283144,61283408,61284874,61288676,61293463,61294948,61295167,61296799,61300950,61301353,61311539,61311783,61314584,61314874,61317653,61319172,61325374,61331275,61333881,61339350,61339565,61343814,61347869,61348755,61349249,61350259,61350567,61370320,61370497,61378362,61380168,61383268,61394852,61395182,61405707,61420745,61470649	61188709,61189069,61190414,61190658,61192980,61203263,61204380,61204601,61206124,61206886,61208977,61211929,61214694,61220457,61221606,61222663,61223164,61223296,61227218,61228719,61228995,61229633,61232532,61235910,61236073,61236236,61236389,61241655,61241819,61245288,61246477,61248683,61256478,61256950,61257108,61257350,61259776,61265557,61266167,61278285,61278443,61280348,61281242,61283269,61283449,61284957,61288877,61293550,61295032,61295290,61296925,61301160,61301454,61311687,61311910,61314744,61314974,61317767,61319327,61325457,61331371,61333971,61339478,61339681,61344029,61348480,61348886,61349285,61350389,61350693,61370413,61370579,61378424,61380361,61383336,61395002,61395233,61406128,61420833,61470714	0.923077
testis_male_adult_37_years	chr6	67889168	67889203	67889202	-	High_confidence	9	9	22	0.983310	4.061482	chr6	67889061	67889473	LTR|ERV1|LTR7C	-	chr6	67887645	67889339	AL713998.1|ENST00000412872.3	-	67887645,67888910	67888821,67889339	0.772727
testis_male_adult_37_years	chr12	16332774	16332776	16332774	-	High_confidence	7	11	12	0.536351	2.663533	chr12	16332362	16333021	LTR|ERV1|LTR12_	-	chr12	16331760	16332758	STRG.199379.1	-	16331760,16332359	16331779,16332758	0.833333
testis_male_adult_37_years	chr16	82575458	82575490	82575470	-	High_confidence	6	6	25	1.117397	4.373661	chr16	82575303	82575476	DNA|hAT-Charlie|MER3	-	chr16	82491737	82575490	AC009117.2|ENST00000650164.1	-	82491737,82496970,82497668,82510388,82574789,82575148	82491984,82497116,82497733,82510544,82575031,82575490	0.960000
testis_male_adult_37_years	chr3	12662744	12662796	12662795	-	RAMPAGE_only	14	14	46	2.056011	5.030633	chr3	12662589	12662820	LINE|L2|L2c	+	chr3	12584332	12664125	RAF1|ENST00000423275.5	-	12584332,12584846,12585121,12585680,12587590,12590797,12591707,12599690,12600151,12600387,12604135,12606200,12608765,12609232,12618514,12663812	12584657,12584981,12585253,12585799,12587637,12590974,12591792,12599808,12600279,12600415,12604289,12606299,12608923,12609335,12618747,12664125	0.565217
testis_male_adult_37_years	chr4	87395495	87395496	87395495	-	High_confidence	650	651	714	31.912867	5.568657	chr4	87395109	87396510	LTR|ERV1|LTR12C	-	chr4	87392524	87395611	STRG.77733.8	-	87392524,87394948	87392703,87395611	0.967787
testis_male_adult_37_years	chr9	18803433	18803481	18803455	-	High_confidence	7	9	19	0.849222	4.058814	chr9	18803053	18803559	LTR|ERVL-MaLR|MLT1E3	-	chr9	18802173	18803275	STRG.158424.1	-	18802173,18803113	18802263,18803275	0.578947
testis_male_adult_37_years	chr6	36879430	36879440	36879430	+	RAMPAGE_only	54	54	84	3.754455	5.297313	chr6	36879127	36880078	LTR|ERV1|PABL_A-int	+	chr6	36885853	36928964	C6orf89|ENST00000480824.6	+	36885853,36894503,36899425,36902220,36914283,36914553,36916444,36919577,36923346	36886028,36894603,36899633,36902434,36914435,36914693,36916574,36919701,36928964	0.702381
testis_male_adult_37_years	chr6	112880099	112880145	112880122	+	High_confidence	3	5	20	0.893918	4.037401	chr6	112879825	112880495	LTR|ERV1|MER52C	-	chr6	112880102	112881245	STRG.118812.1	+	112880102	112881245	0.850000
testis_male_adult_37_years	chr9	20658606	20658608	20658607	+	High_confidence	3	4	7	0.312871	2.807355	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.857143
testis_male_adult_37_years	chr5	66721665	66721669	66721668	+	RAMPAGE_only	11	11	18	0.804526	3.454822	chr5	66720805	66722655	LINE|L2|L2a	+	chr5	66738030	66788705	MAST4|ENST00000478569.1	+	66738030,66759708,66783334,66788669	66738257,66759862,66783384,66788705	0.500000
testis_male_adult_37_years	chr11	65367381	65367438	65367437	+	High_confidence	25	25	51	2.279490	4.614108	chr11	65367362	65367667	SINE|Alu|AluY	-	chr11	65367437	65381383	STRG.188408.2	+	65367437,65367926,65379775	65367815,65368043,65381383	1.000000
testis_male_adult_37_years	chr20	50559377	50559398	50559377	+	RAMPAGE_only	5	5	17	0.759830	3.625000	chr20	50559285	50560592	LINE|L1|HAL1	-	chr20	50510353	50585241	PTPN1|ENST00000371621.4	+	50510353,50561362,50564968,50568379,50574516,50578419,50579167,50579702,50581264,50582691	50510590,50561453,50565069,50568478,50574654,50578629,50579329,50579926,50581460,50585241	0.941176
testis_male_adult_37_years	chr16	27632457	27632464	27632457	+	High_confidence	15	19	48	2.145403	4.721371	chr16	27632188	27632740	LTR|ERV1|MER72	-	chr16	27632463	27727873	KIAA0556|ENST00000567894.5	+	27632463,27648603,27654607,27677728,27681398,27698327,27699533,27701588,27703895,27708704,27721557,27727215	27632603,27648735,27654736,27677996,27681530,27698500,27699599,27701695,27703998,27708920,27721695,27727873	0.770833
testis_male_adult_37_years	chrX	31862902	31862920	31862911	-	RAMPAGE_only	10	10	29	1.296181	4.664498	chrX	31862739	31863061	LTR|ERV1|MER48	+	chrX	31119220	31875373	DMD|ENST00000358062.6	-	31119220,31134101,31146290,31147274,31169442,31172347,31173538,31178668,31180369,31182737,31203960,31206581,31209497,31223046,31260954,31323597,31348555,31444480,31478105,31478982,31496787,31507280,31627672,31657989,31679374,31729630,31773959,31819974,31836717,31875187	31121930,31134194,31146414,31147518,31169601,31172413,31173604,31178805,31180481,31182904,31204118,31206667,31209699,31223121,31261016,31323658,31348634,31444627,31478374,31479103,31496944,31507453,31627862,31658144,31679586,31729748,31774192,31820083,31836819,31875373	0.793103
testis_male_adult_37_years	chr18	58460415	58460420	58460415	+	High_confidence	120	136	173	7.732389	5.867297	chr18	58459211	58460806	LTR|ERV1|LTR12C	+	chr18	58460401	58469013	STRG.262693.1	+	58460401	58469013	0.872832
testis_male_adult_37_years	chr6	41075225	41075226	41075225	+	RAMPAGE_only	5	5	8	0.357567	2.807355	chr6	41075186	41075345	SINE|Alu|FRAM	-	chr6	41073184	41106224	STRG.112642.4	+	41073184,41079028,41084045,41089578,41090203,41091527,41092911,41094395,41097356,41103942	41076295,41079164,41084192,41089710,41090309,41091694,41093085,41094497,41102114,41106224	0.875000
testis_male_adult_37_years	chr3	144877500	144877509	144877508	+	RAMPAGE_only	7	7	17	0.759830	3.690117	chr3	144877418	144877772	LTR|ERVL-MaLR|THE1A	-	chr3	144894485	144896589	STRG.62867.1	+	144894485	144896589	0.529412
testis_male_adult_37_years	chr15	90597736	90597737	90597736	-	RAMPAGE_only	10	10	12	0.536351	2.913977	chr15	90597557	90597702	DNA|hAT-Charlie|MER103C	-	chr15	90595839	90596447	AC103739.1|ENST00000558389.1	-	90595839,90596334	90596200,90596447	0.833333
testis_male_adult_37_years	chr4	40762602	40762625	40762602	+	High_confidence	6	7	13	0.581047	3.180833	chr4	40762633	40763045	DNA|hAT-Charlie|MER1B	+	chr4	40762605	40776188	NSUN7|ENST00000463952.5	+	40762605,40773055,40774264,40774766,40776048	40762708,40773238,40774417,40774950,40776188	0.615385
testis_male_adult_37_years	chr2	36513734	36513755	36513734	+	High_confidence	1	2	8	0.357567	2.807355	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.625000
testis_male_adult_37_years	chr21	45593653	45593667	45593653	+	High_confidence	8	9	28	1.251485	4.012188	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	0.928571
testis_male_adult_37_years	chr13	25512985	25513060	25513020	+	High_confidence	9	9	42	1.877227	4.853056	chr13	25511888	25514008	Retroposon|SVA|SVA_D	-	chr13	25512544	25863139	STRG.212519.4	+	25512544,25529998,25530561,25532271,25533272,25537987,25540318,25541918,25543290,25551337,25553792,25554990,25558972,25559720,25563955,25570766,25571609,25574807,25577068,25578814,25579807,25581818,25589634,25699172,25769045,25774848,25828117,25837162,25839545,25860194,25860803,25862300	25513292,25530098,25530660,25532317,25533313,25538061,25540388,25542046,25543402,25551503,25553920,25555068,25559061,25559765,25564031,25570872,25571692,25574857,25577138,25578899,25579947,25581957,25589699,25699345,25769229,25774959,25828192,25837285,25839624,25860256,25860860,25863139	0.857143
testis_male_adult_37_years	chr4	170979154	170979166	170979165	+	High_confidence	4	4	11	0.491655	3.277613	chr4	170977400	170979316	LINE|L1|L1PB1	-	chr4	170979879	170994648	STRG.85883.2	+	170979879,170993736	170980043,170994648	1.000000
testis_male_adult_37_years	chr12	106684728	106684785	106684728	+	High_confidence	336	340	1632	72.943695	6.661750	chr12	106684751	106684909	LINE|CR1|L3	+	chr12	106684698	106762804	RFX4|NM_032491.5	+	106684698,106686883,106689286,106696282,106709329,106711452,106715399,106719959,106720758,106732129,106732923,106747436,106750654,106761196	106684908,106687097,106689364,106696446,106709430,106711511,106715544,106720054,106720876,106732249,106733085,106747599,106750793,106762804	0.706495
testis_male_adult_37_years	chr7	69483154	69483155	69483154	+	RAMPAGE_only	4	4	6	0.268175	2.584963	chr7	69482426	69483187	LTR|ERV1|LTR17	+	chr7	69490244	69490836	STRG.131848.1	+	69490244	69490836	0.666667
testis_male_adult_37_years	chr2	181954484	181954513	181954491	+	High_confidence	18	18	70	3.128712	5.181363	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.885714
testis_male_adult_37_years	chr1	179941831	179941873	179941872	-	High_confidence	4	4	20	0.893918	3.541446	chr1	179941689	179942118	LTR|ERVL-MaLR|MLT1G3	-	chr1	179926640	179941796	AL353708.2|ENST00000567486.2	-	179926640,179926794,179941478	179926667,179926896,179941796	0.550000
testis_male_adult_37_years	chr1	80638426	80638439	80638426	+	RAMPAGE_only	5	5	11	0.491655	3.277613	chr1	80638316	80638648	LTR|ERV1|MER61A	+	chr1	80641283	80646788	LINC01781|ENST00000443565.1	+	80641283,80644224,80646562	80641401,80644353,80646788	0.636364
testis_male_adult_37_years	chr17	68181115	68181116	68181115	+	High_confidence	5	5	7	0.312871	2.584963	chr17	68179673	68181122	LTR|ERV1|LTR12C	+	chr17	68180716	68192802	STRG.256677.2	+	68180716,68181550	68181194,68192802	0.571429
testis_male_adult_37_years	chr18	77993722	77993766	77993726	-	High_confidence	17	17	53	2.368882	4.803023	chr18	77993549	77993903	LTR|ERVL-MaLR|THE1B	-	chr18	77992277	77993769	STRG.264737.4	-	77992277	77993769	0.735849
testis_male_adult_37_years	chr5	85647813	85647853	85647822	-	High_confidence	13	14	67	2.994625	5.524826	chr5	85647706	85648160	LTR|ERV1|LTR71A	-	chr5	85619237	85648018	STRG.95820.1	-	85619237,85629687,85633293,85635203,85647484	85620193,85629814,85633429,85635252,85648018	0.865672
testis_male_adult_37_years	chr13	57216916	57216944	57216943	-	RAMPAGE_only	21	21	48	2.145403	4.115602	chr13	57216662	57216963	SINE|Alu|AluSc	+	chr13	57211701	57329603	STRG.215783.1	-	57211701,57216630,57310960	57213227,57216778,57329603	0.958333
testis_male_adult_37_years	chr3	197913260	197913300	197913295	-	High_confidence	64	66	156	6.972559	5.809139	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.974359
testis_male_adult_37_years	chr11	32887860	32887861	32887860	-	High_confidence	106	106	106	4.737765	4.697912	chr11	32887478	32888724	LTR|ERV1|LTR12C	-	chr11	32886530	32887848	STRG.186079.1	-	32886530	32887848	0.990566
testis_male_adult_37_years	chr11	45253889	45253944	45253905	+	High_confidence	61	62	164	7.330126	6.109132	chr11	45253748	45254095	LTR|ERVL-MaLR|MLT1J2	+	chr11	45253883	45254583	AC103681.1|ENST00000531663.1	+	45253883,45254184	45253907,45254583	0.762195
testis_male_adult_37_years	chr13	43078349	43078351	43078350	+	RAMPAGE_only	31	50	63	2.815841	4.335546	chr13	43078274	43078372	SINE|MIR|MIR3	-	chr13	43055091	43114127	STRG.213703.1	+	43055091,43059393,43065685,43068929,43078611,43085767,43107177	43058862,43062295,43065737,43069003,43078688,43085838,43114127	0.936508
testis_male_adult_37_years	chr2	131556798	131556852	131556817	+	RAMPAGE_only	15	15	43	1.921923	2.996068	chr2	131555875	131556823	LINE|L1|L1PA16	-	chr2	131543521	131591430	STRG.36693.3	+	131543521,131545045,131555071,131564860,131577507,131580151,131582017,131588664	131543823,131553166,131557463,131575207,131577618,131580264,131582129,131591430	0.953488
testis_male_adult_37_years	chr20	774948	774949	774948	-	RAMPAGE_only	5	7	7	0.312871	2.521641	chr20	774885	774978	SINE|MIR|MIR	+	chr20	760079	776015	SLC52A3|ENST00000217254.11	-	760079,761700,763497,765207,768296,775954	761238,761824,764003,765825,768482,776015	1.000000
testis_male_adult_37_years	chr22	37717381	37717382	37717381	-	High_confidence	52	52	61	2.726449	4.640361	chr22	37716969	37718404	LTR|ERV1|LTR12C	-	chr22	37716478	37717318	STRG.285634.1	-	37716478	37717318	0.918033
testis_male_adult_37_years	chr12	47223495	47223551	47223547	+	High_confidence	108	112	222	9.922488	6.806640	chr12	47223277	47223596	LINE|L2|L2	-	chr12	47223544	47240017	STRG.202033.3	+	47223544,47223923	47223672,47240017	0.702703
testis_male_adult_37_years	chr12	9567435	9567471	9567435	+	RAMPAGE_only	26	27	55	2.458274	4.853572	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9563963	9633828	AC092821.3|ENST00000642112.1	+	9563963,9567489,9569057,9570762,9571460,9573002,9573465,9584105,9606352,9607670,9617243,9622318,9633424	9565303,9567567,9569202,9570892,9571573,9573093,9573534,9584164,9606456,9607802,9617351,9622436,9633828	0.818182
testis_male_adult_37_years	chr1	176162895	176162938	176162936	-	RAMPAGE_only	8	10	26	1.162093	4.251629	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.615385
testis_male_adult_37_years	chr11	50184249	50184250	50184249	+	High_confidence	22	22	29	1.296181	3.601125	chr11	50183088	50184666	LTR|ERV1|LTR12C	+	chr11	50184154	50185157	STRG.187216.1	+	50184154	50185157	0.931034
testis_male_adult_37_years	chr2	218549809	218549818	218549809	-	RAMPAGE_only	10	10	27	1.206789	3.642371	chr2	218549464	218549763	SINE|Alu|AluSx	-	chr2	218454814	218568291	USP37|ENST00000418019.5	-	218454814,218455579,218457091,218459789,218463305,218466009,218474629,218476839,218479649,218482069,218485663,218488303,218495759,218497733,218498025,218509978,218529955,218534608,218546220,218546918,218549808,218553552,218558497,218560819,218562717,218568177	218455017,218455718,218457161,218459905,218463366,218466176,218474885,218476981,218479715,218482234,218485743,218488421,218495950,218497857,218498157,218510140,218530040,218534706,218546298,218547091,218549909,218553724,218558677,218560883,218562813,218568291	0.851852
testis_male_adult_37_years	chr11	59810257	59810288	59810257	-	High_confidence	9	9	20	0.893918	3.984184	chr11	59809995	59810308	SINE|Alu|AluSx1	-	chr11	59806534	59810300	MRPL16|ENST00000534340.1	-	59806534,59807700,59809854,59810239	59806832,59807849,59809920,59810300	0.800000
testis_male_adult_37_years	chr3	195696423	195696424	195696423	+	High_confidence	5	5	8	0.357567	2.500000	chr3	195696374	195696623	LINE|L1|L1PA7	+	chr3	195696436	195708504	MUC20-OT1|ENST00000620737.3	+	195696436,195699029,195708133	195696589,195699207,195708504	0.875000
testis_male_adult_37_years	chr3	9216721	9216774	9216759	-	High_confidence	9	10	37	1.653748	4.432294	chr3	9216588	9216732	SINE|MIR|MIRc	-	chr3	9014741	9216760	SRGAP3|ENST00000433332.7	-	9014741,9015596,9025260,9026934,9028099,9032649,9038062,9047390,9049260,9053026,9056232,9058250,9060230,9064395,9080024,9104679,9124724,9216624	9014841,9015731,9025338,9026995,9028130,9032752,9038090,9047475,9049469,9053224,9056334,9058472,9060359,9064581,9080087,9104842,9124917,9216760	0.540541
testis_male_adult_37_years	chr14	81622902	81622921	81622920	-	High_confidence	6	6	15	0.670438	3.467720	chr14	81622661	81624332	LTR|ERV1|LTR12C	-	chr14	81605346	81623061	LINC01467|NR_110074.1	-	81605346,81607131,81622652	81605554,81607701,81623061	0.600000
testis_male_adult_37_years	chr7	39013088	39013109	39013108	+	High_confidence	3	3	6	0.268175	2.584963	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	1.000000
testis_male_adult_37_years	chr5	133089620	133089678	133089677	+	RAMPAGE_only	42	49	171	7.642997	6.063917	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.976608
testis_male_adult_37_years	chr22	30611018	30611061	30611060	+	RAMPAGE_only	3	5	15	0.670438	3.521641	chr22	30611097	30611237	SINE|MIR|MIR3	+	chr22	30607002	30627005	STRG.284700.12	+	30607002,30610870,30612872,30615300,30615600,30617329,30622967,30626459	30607395,30611063,30614501,30615473,30615787,30617495,30623083,30627005	0.866667
testis_male_adult_37_years	chr7	111382519	111382576	111382519	+	High_confidence	8	8	24	1.072701	4.001629	chr7	111381849	111382825	LINE|L2|L2	-	chr7	111382542	111382896	STRG.136050.1	+	111382542	111382896	0.666667
testis_male_adult_37_years	chr11	73785298	73785319	73785298	+	RAMPAGE_only	7	8	25	1.117397	4.019471	chr11	73785129	73785574	LINE|L2|L2c	-	chr11	73787315	73864611	MRPL48|ENST00000310614.11	+	73787315,73805026,73808312,73825707,73844806,73859906,73863171,73864295	73787992,73805079,73808350,73825796,73844976,73860009,73863261,73864611	0.880000
testis_male_adult_37_years	chr6	151791373	151791379	151791373	+	High_confidence	31	32	58	2.592362	5.108277	chr6	151791178	151791542	LTR|ERVL-MaLR|THE1B	+	chr6	151791256	151808166	STRG.123346.6	+	151791256,151807842	151791459,151808166	0.603448
testis_male_adult_37_years	chr5	124893245	124893248	124893247	+	High_confidence	108	178	183	8.179348	5.927713	chr5	124892257	124893560	LTR|ERV1|LTR12C	+	chr5	124893359	124980772	LINC02240|ENST00000642446.1	+	124893359,124919946,124921570,124950963,124951283,124980203	124893563,124920122,124921726,124951191,124951426,124980772	0.628415
testis_male_adult_37_years	chr1	11949199	11949229	11949199	-	High_confidence	2	2	10	0.446959	2.846439	chr1	11948950	11949338	LTR|ERVL-MaLR|MLT1K	-	chr1	11948844	11949185	STRG.1199.1	-	11948844	11949185	0.700000
testis_male_adult_37_years	chr12	69594600	69594615	69594606	+	RAMPAGE_only	3	3	9	0.402263	3.000000	chr12	69594574	69594863	SINE|Alu|AluJr4	+	chr12	69585681	69601577	CCT2|NM_001198842.1	+	69585681,69586269,69586752,69587504,69587929,69588149,69589484,69592058,69592975,69593509,69597155,69597637,69597967,69598321,69599862,69601294	69586009,69586344,69586818,69587616,69588006,69588262,69589687,69592159,69593103,69593613,69597275,69597766,69598071,69598421,69600004,69601577	0.777778
testis_male_adult_37_years	chr11	41714428	41714456	41714444	-	High_confidence	3	3	11	0.491655	3.121928	chr11	41714444	41714603	LTR|ERVL-MaLR|MLT1G1	+	chr11	41518894	41714448	AC021006.2|ENST00000526978.5	-	41518894,41528139,41589418,41591105,41620347,41712348,41714404	41519164,41528209,41589645,41591196,41620399,41712453,41714448	0.545455
testis_male_adult_37_years	chr6	36540276	36540277	36540276	-	RAMPAGE_only	10	10	10	0.446959	3.321928	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36547470	STK38|ENST00000229812.7	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540207,36547470	0.700000
testis_male_adult_37_years	chr21	19649741	19649756	19649741	+	High_confidence	2	2	12	0.536351	3.251629	chr21	19649516	19649811	SINE|Alu|AluY	+	chr21	19649607	19676385	STRG.279211.1	+	19649607,19656317,19676323	19649816,19656422,19676385	0.666667
testis_male_adult_37_years	chr12	10030681	10030688	10030681	+	High_confidence	28	28	69	3.084017	4.852800	chr12	10030563	10030691	LTR|ERV1|MER52C	-	chr12	10030677	10052835	CLEC9A|ENST00000544751.1	+	10030677,10041465,10051990	10030972,10041620,10052835	0.811594
testis_male_adult_37_years	chr20	37104664	37104703	37104680	-	RAMPAGE_only	6	7	19	0.849222	4.058814	chr20	37104439	37104712	SINE|Alu|AluSx	-	chr20	37101229	37108664	MROH8|ENST00000466091.1	-	37101229,37102663,37108598	37101418,37102879,37108664	0.736842
testis_male_adult_37_years	chr4	4482033	4482055	4482054	-	RAMPAGE_only	2	3	7	0.312871	2.584963	chr4	4482049	4482561	LINE|L2|L2c	+	chr4	4425160	4461954	STX18|ENST00000512195.5	-	4425160,4434769,4438393,4457190,4457422,4459371,4461905	4425222,4434858,4438509,4457257,4457500,4459487,4461954	0.571429
testis_male_adult_37_years	chr2	64324823	64324829	64324823	+	High_confidence	4	4	9	0.402263	2.947703	chr2	64324775	64324901	LINE|L2|L2b	-	chr2	64325181	64325721	STRG.30205.1	+	64325181	64325721	0.555556
testis_male_adult_37_years	chr7	47539243	47539278	47539277	-	High_confidence	32	39	84	3.754455	5.725447	chr7	47539244	47539410	DNA|hAT-Charlie|Chap1_Mam	-	chr7	47369280	47539277	TNS3|ENST00000450444.5	-	47369280,47396799,47400392,47400784,47411726,47413936,47415093,47424100,47428311,47435281,47437262,47439486,47442002,47481102,47506906,47529035,47539074	47369621,47396904,47400458,47400914,47411802,47413997,47415206,47424184,47428376,47435404,47437313,47439658,47442055,47481141,47506944,47529147,47539277	0.833333
testis_male_adult_37_years	chr15	42492811	42492842	42492811	+	High_confidence	9	9	29	1.296181	4.513153	chr15	42492767	42492966	LINE|RTE-BovB|MamRTE1	+	chr15	42492870	42531545	SNAP23|ENST00000563765.5	+	42492870,42511832,42512954,42513335,42515236,42528261,42529674,42531412	42492945,42511903,42512996,42513447,42515354,42528420,42529819,42531545	0.724138
testis_male_adult_37_years	chr12	79711835	79711836	79711835	+	RAMPAGE_only	186	186	230	10.280055	4.233112	chr12	79710733	79712252	LTR|ERV1|LTR12C	+	chr12	79710827	79712625	STRG.205911.1	+	79710827	79712625	0.965217
testis_male_adult_37_years	chr5	41294865	41294887	41294886	-	High_confidence	81	87	214	9.564921	5.565869	chr5	41294486	41295148	LINE|L2|L2a	+	chr5	41294269	41294867	STRG.92721.1	-	41294269	41294867	0.682243
testis_male_adult_37_years	chr4	119217569	119217610	119217569	+	RAMPAGE_only	3	3	11	0.491655	3.277613	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212740	119294638	STRG.80743.2	+	119212740,119217549,119235289,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119214222,119217673,119235411,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119294638	0.909091
testis_male_adult_37_years	chr10	85577728	85577763	85577758	+	High_confidence	38	39	136	6.078641	5.983192	chr10	85576887	85578433	LINE|L2|L2a	-	chr10	85577752	85605804	GRID1-AS1|ENST00000628016.1	+	85577752,85605394	85577898,85605804	0.654412
testis_male_adult_37_years	chr6	145686909	145686926	145686909	-	High_confidence	3	4	9	0.402263	2.500000	chr6	145686778	145686917	SINE|MIR|MIRc	-	chr6	145633719	145686901	EPM2A|ENST00000639849.1	-	145633719,145635244,145671238,145686121,145686843	145633887,145635486,145671399,145686296,145686901	0.777778
testis_male_adult_37_years	chr1	223117021	223117031	223117021	-	RAMPAGE_only	4	4	12	0.536351	3.095795	chr1	223116165	223117491	LTR|ERV1|LTR12C	-	chr1	223109405	223137287	TLR5|ENST00000540964.5	-	223109405,223132474,223134681,223137177	223113035,223132639,223134864,223137287	0.750000
testis_male_adult_37_years	chr4	170092164	170092165	170092164	+	High_confidence	87	88	113	5.050636	4.364999	chr4	170091048	170092581	LTR|ERV1|LTR12C	+	chr4	170092077	170093702	STRG.86022.1	+	170092077	170093702	0.982301
testis_male_adult_37_years	chr8	78329228	78329237	78329236	-	High_confidence	31	31	66	2.949929	4.409058	chr8	78328808	78329591	LTR|ERV1|LTR12	-	chr8	78328262	78329476	STRG.149053.1	-	78328262	78329476	0.984848
testis_male_adult_37_years	chr7	31695968	31695972	31695971	+	High_confidence	6	6	12	0.536351	3.277613	chr7	31695752	31696159	LTR|ERVL-MaLR|MLT1J1	-	chr7	31695962	31707596	PPP1R17|ENST00000498609.1	+	31695962,31696964,31707203,31707514	31696078,31697117,31707420,31707596	0.583333
testis_male_adult_37_years	chr11	116420884	116420936	116420884	-	High_confidence	17	17	81	3.620367	5.387571	chr11	116420701	116421122	DNA|hAT-Charlie|MER1A	-	chr11	116319498	116420923	STRG.194605.1	-	116319498,116420735	116320439,116420923	0.679012
testis_male_adult_37_years	chr2	107746940	107746947	107746940	-	High_confidence	59	60	88	3.933238	4.725998	chr2	107746623	107747902	LTR|ERV1|LTR12C	-	chr2	107646863	107746742	STRG.34134.1	-	107646863,107650075,107650719,107746545	107646997,107650163,107650800,107746742	0.693182
testis_male_adult_37_years	chr7	16502468	16502530	16502503	-	RAMPAGE_only	8	8	50	2.234795	3.971606	chr7	16501688	16502649	LTR|ERV1|LTR1D	+	chr7	16461542	16530580	SOSTDC1|ENST00000396652.1	-	16461542,16464315,16465463,16496379,16530186	16462963,16464387,16465857,16496509,16530580	0.640000
testis_male_adult_37_years	chr11	70340971	70340998	70340997	+	High_confidence	13	16	40	1.787836	4.615312	chr11	70340877	70341163	LTR|ERVL-MaLR|MLT1F1	-	chr11	70340995	70356254	PPFIA1|ENST00000530294.5	+	70340995,70343668,70348188,70354300,70355638,70356160	70341097,70343892,70348420,70354452,70355811,70356254	0.700000
testis_male_adult_37_years	chr15	51901259	51901266	51901259	+	High_confidence	4	5	9	0.402263	2.750000	chr15	51900843	51901546	LINE|L1|L1MB7	-	chr15	51901265	51911124	TMOD3|ENST00000560725.1	+	51901265,51901891,51908775,51911039	51901492,51902036,51908862,51911124	0.888889
testis_male_adult_37_years	chr3	23201400	23201401	23201400	+	RAMPAGE_only	7	7	11	0.491655	2.845351	chr3	23201156	23201840	LINE|L2|L2a	-	chr3	23203019	23590222	UBE2E2|ENST00000425792.5	+	23203019,23208691,23217261,23499607,23532553,23589733	23203262,23208875,23217312,23499740,23532701,23590222	0.545455
testis_male_adult_37_years	chr10	27257513	27257515	27257514	+	High_confidence	131	358	361	16.135217	5.304836	chr10	27256291	27257933	LTR|ERV1|LTR12C	+	chr10	27257529	27264160	STRG.172234.2	+	27257529,27262956	27258386,27264160	0.991690
testis_male_adult_37_years	chr5	96740576	96740609	96740596	+	High_confidence	3	4	12	0.536351	3.459432	chr5	96740252	96740672	LTR|ERVL-MaLR|MLT1B	-	chr5	96741324	96773055	CAST|ENST00000510500.5	+	96741324,96741493,96742654,96746341,96747344,96748517,96750586,96754059,96754657,96757443,96757582,96762273,96765223,96766052,96767437,96767906,96770530,96771643,96772639	96741358,96741580,96742756,96746425,96747392,96748613,96750682,96754161,96754741,96757494,96757654,96762372,96765325,96766145,96767482,96767999,96770602,96771702,96773055	0.833333
testis_male_adult_37_years	chr1	55823753	55823774	55823769	+	RAMPAGE_only	3	3	10	0.446959	3.121928	chr1	55823672	55823930	LINE|L2|L2c	-	chr1	55581060	55832572	AL603840.1|ENST00000634769.1	+	55581060,55614920,55673259,55832263	55581194,55615002,55673317,55832572	0.500000
testis_male_adult_37_years	chr6	143099686	143099687	143099686	-	High_confidence	9	9	13	0.581047	3.022055	chr6	143099527	143099667	LINE|L1|L1ME3F	-	chr6	143094033	143099645	AL023581.1|ENST00000423500.1	-	143094033,143099483	143094326,143099645	0.692308
testis_male_adult_37_years	chr12	14419148	14419164	14419163	+	High_confidence	3	4	6	0.268175	2.584963	chr12	14419086	14419311	SINE|MIR|MIR	-	chr12	14419163	14424291	ATF7IP|ENST00000428217.6	+	14419163,14420301,14423908	14419190,14420446,14424291	0.833333
testis_male_adult_37_years	chr7	97116655	97116671	97116655	+	High_confidence	14	14	47	2.100707	4.598652	chr7	97116309	97116733	LTR|ERV1|MER57C2	-	chr7	97116592	97181763	SDHAF3|NM_020186.2	+	97116592,97181011	97117897,97181763	0.936170
testis_male_adult_37_years	chr2	40746480	40746482	40746480	+	High_confidence	59	90	95	4.246110	5.406269	chr2	40746162	40746658	LTR|ERV1|MER51A	+	chr2	40746489	40747022	STRG.27169.1	+	40746489	40747022	0.800000
testis_male_adult_37_years	chr19	55255768	55255769	55255768	-	High_confidence	5	5	8	0.357567	2.521641	chr19	55255671	55256025	LINE|L2|L2b	+	chr19	55245343	55255769	PPP6R1|ENST00000592242.1	-	55245343,55245491,55246876,55255674	55245402,55245678,55247109,55255769	0.875000
testis_male_adult_37_years	chr12	9167500	9167514	9167513	-	High_confidence	3	3	11	0.491655	3.121928	chr12	9167367	9167582	LINE|L1|L1PA10	-	chr12	9160432	9167497	PZP|ENST00000539983.5	-	9160432,9161032,9162280,9162596,9163667,9164132,9165138,9166051,9166980	9160490,9161116,9162444,9162648,9163789,9164259,9165367,9166202,9167497	0.909091
testis_male_adult_37_years	chr13	77475823	77475884	77475823	+	High_confidence	41	42	123	5.497595	5.682273	chr13	77474476	77476020	LTR|ERV1|LTR12C	-	chr13	77475254	77608146	STRG.217366.1	+	77475254,77555856,77556595,77559803,77563830,77567679,77568294,77569370,77572123,77589143,77591394,77593513,77597544,77599328,77599688,77602064,77602653,77603075,77604355,77608055	77476057,77555918,77556713,77559863,77563899,77567748,77568333,77569451,77572189,77589224,77591460,77593573,77597589,77599388,77599748,77602124,77602713,77603135,77604415,77608146	0.845528
testis_male_adult_37_years	chr8	68850625	68850628	68850627	-	High_confidence	7	19	27	1.206789	3.852498	chr8	68850305	68850964	LTR|ERV1|LTR12C	-	chr8	68850298	68850629	STRG.147838.1	-	68850298	68850629	0.814815
testis_male_adult_37_years	chr5	131636210	131636216	131636210	-	High_confidence	13	13	22	0.983310	3.884184	chr5	131636149	131636239	LINE|L2|L2c	+	chr5	131423920	131635236	RAPGEF6|NM_001164387.1	-	131423920,131430858,131433429,131439580,131442348,131446482,131450022,131453053,131455800,131461704,131464040,131469800,131472586,131479512,131489545,131492581,131495552,131498442,131504625,131505363,131508070,131510313,131521389,131548046,131561977,131592382,131603270,131604622,131634961	131427291,131431349,131433658,131439715,131442537,131446703,131450046,131453177,131456012,131462088,131464281,131469815,131472744,131479753,131489654,131492785,131495660,131498607,131504778,131505522,131508207,131510491,131521521,131548190,131562047,131592466,131603327,131604693,131635236	0.590909
testis_male_adult_37_years	chr10	133369927	133370017	133370016	-	RAMPAGE_only	9	13	52	2.324186	4.926119	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
testis_male_adult_37_years	chr9	33749404	33749409	33749404	-	High_confidence	67	68	120	5.363507	5.741403	chr9	33748869	33749969	LTR|ERV1|LTR12D	-	chr9	33732974	33749441	STRG.160296.1	-	33732974,33738287,33748766	33734119,33738416,33749441	0.958333
testis_male_adult_37_years	chr6	37784860	37784888	37784887	+	High_confidence	16	18	49	2.190099	4.828397	chr6	37784646	37784908	LTR|ERVL|LTR33	-	chr6	37784828	37801692	STRG.112296.1	+	37784828,37801615	37785324,37801692	0.979592
testis_male_adult_37_years	chr19	10564937	10564959	10564937	-	RAMPAGE_only	5	6	10	0.446959	2.947703	chr19	10564755	10564893	SINE|MIR|MIRb	-	chr19	10553575	10565971	KRI1|ENST00000478863.5	-	10553575,10555086,10555284,10557551,10557971,10558163,10559358,10559612,10559809,10560311,10561002,10561168,10561666,10561790,10562728,10564928,10565716,10565905	10554281,10555185,10555349,10557895,10558060,10558239,10559529,10559708,10559936,10560448,10561080,10561265,10561716,10561845,10562837,10565034,10565790,10565971	0.900000
testis_male_adult_37_years	chr1	232313073	232313107	232313073	-	High_confidence	3	3	17	0.759830	3.969816	chr1	232312833	232313028	LTR|ERVL-MaLR|MLT1H	-	chr1	232250813	232313113	STRG.20468.1	-	232250813,232261733,232312721	232251018,232261823,232313113	0.647059
testis_male_adult_37_years	chr18	49116171	49116192	49116171	-	RAMPAGE_only	16	16	62	2.771145	5.381458	chr18	49115759	49116372	LTR|ERVL?|LTR87	+	chr18	49043803	49097493	DYM|ENST00000577734.1	-	49043803,49093216,49097401	49044204,49093311,49097493	0.596774
testis_male_adult_37_years	chr1	147517874	147517875	147517874	-	High_confidence	934	1051	1160	51.847234	6.620599	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147382191	147517875	LINC00624|NR_038423.2	-	147382191,147514337,147515520,147517442	147384863,147514448,147515676,147517875	0.897414
testis_male_adult_37_years	chr17	59651200	59651236	59651208	+	RAMPAGE_only	8	13	37	1.653748	4.391490	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.945946
testis_male_adult_37_years	chr10	47490459	47490460	47490459	-	High_confidence	50	52	54	2.413578	4.743236	chr10	47490325	47490660	LTR|ERVK|LTR14A	-	chr10	47487218	47490407	FAM25G|ENST00000481177.1	-	47487218,47489585,47490286	47487408,47489648,47490407	0.888889
testis_male_adult_37_years	chr15	74479498	74479499	74479498	-	RAMPAGE_only	392	392	394	17.610181	5.047776	chr15	74479083	74480909	LTR|ERV1|LTR12C	-	chr15	74478069	74490286	AC012435.1|ENST00000563287.1	-	74478069,74490235	74481403,74490286	0.992386
testis_male_adult_37_years	chr10	105820319	105820349	105820348	-	High_confidence	17	20	30	1.340877	4.521641	chr10	105820286	105820438	SINE|MIR|MIR3	-	chr10	105673609	105820333	LOC101927549|NR_120625.1	-	105673609,105817917,105819067,105820158	105673688,105818026,105819213,105820333	0.633333
testis_male_adult_37_years	chr14	100573257	100573274	100573257	+	High_confidence	2	2	8	0.357567	2.521641	chr14	100572869	100573346	LINE|L2|L2b	-	chr14	100573552	100575147	STRG.231233.2	+	100573552	100575147	0.500000
testis_male_adult_37_years	chr8	90011957	90011958	90011957	+	RAMPAGE_only	12	12	14	0.625742	3.521641	chr8	90011776	90012045	LINE|L1|L1ME4b	-	chr8	90016733	90018966	DECR1|ENST00000522583.1	+	90016733,90018908	90017326,90018966	0.571429
testis_male_adult_37_years	chr2	6541941	6541962	6541941	+	High_confidence	2	2	11	0.491655	3.027169	chr2	6541592	6542278	LTR|ERV1|MER50B	-	chr2	6542134	6542587	STRG.23470.1	+	6542134	6542587	0.909091
testis_male_adult_37_years	chr1	173420460	173420495	173420460	-	RAMPAGE_only	2	2	11	0.491655	3.459432	chr1	173420245	173420467	LTR|ERV1|LTR78	-	chr1	173418073	173442097	AL645568.1|ENST00000437190.1	-	173418073,173440462,173441918	173418622,173440750,173442097	0.545455
testis_male_adult_37_years	chr11	12249200	12249239	12249200	+	RAMPAGE_only	8	10	68	3.039321	4.968689	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.735294
testis_male_adult_37_years	chr9	106500854	106500855	106500854	-	High_confidence	66	67	67	2.994625	5.106905	chr9	106500441	106501847	LTR|ERV1|LTR12C	-	chr9	106500145	106500965	STRG.165900.1	-	106500145	106500965	0.955224
testis_male_adult_37_years	chr4	58565185	58565202	58565201	-	High_confidence	13	13	29	1.296181	4.593069	chr4	58564943	58565505	LTR|ERVL|MLT2B3	+	chr4	58562164	58565122	AC019133.1|ENST00000508292.1	-	58562164,58563506,58565068	58562319,58563717,58565122	0.724138
testis_male_adult_37_years	chr1	160350214	160350215	160350214	+	High_confidence	6	6	6	0.268175	2.584963	chr1	160350194	160350231	LINE|RTE-BovB|MamRTE1	-	chr1	160350104	160355753	NCSTN|ENST00000424645.6	+	160350104,160351287,160351695,160352053,160352886,160353159,160354117,160355654	160350250,160351372,160351805,160352206,160352991,160353237,160354290,160355753	0.833333
testis_male_adult_37_years	chr2	165957417	165957451	165957436	+	High_confidence	49	49	161	7.196039	6.450491	chr2	165956404	165957623	LTR|ERV1|LTR12E	-	chr2	165957429	166036385	AC010127.1|ENST00000597623.3	+	165957429,166015612,166027116,166036065	165957592,166015729,166027229,166036385	0.503106
testis_male_adult_37_years	chr1	498768	498827	498768	-	High_confidence	2	2	14	0.625742	2.985228	chr1	498316	498736	DNA|hAT-Charlie|MER1A	-	chr1	494770	498976	AL732372.2|ENST00000616311.5	-	494770,494991,497108,498398,498683	494898,495049,497299,498456,498976	0.928571
testis_male_adult_37_years	chr1	114854173	114854198	114854197	+	High_confidence	4	4	8	0.357567	2.750000	chr1	114854158	114854433	SINE|Alu|AluJo	-	chr1	114854802	114995370	SYCP1|NM_001282541.1	+	114854802,114855437,114856572,114857231,114857443,114858546,114859742,114860735,114874505,114876068,114876736,114878093,114885534,114886124,114887625,114895447,114910396,114911478,114913032,114913974,114923448,114926277,114926500,114944338,114944871,114946288,114947245,114977556,114981335,114984724,114994697,114994881	114855018,114855572,114856657,114857275,114857497,114858711,114859810,114860809,114874564,114876138,114876810,114878202,114885629,114886309,114887693,114895509,114910501,114911582,114913150,114914045,114923530,114926340,114926563,114944455,114944982,114946381,114947320,114977616,114981512,114984868,114994787,114995370	0.625000
testis_male_adult_37_years	chr21	35800979	35800992	35800979	-	RAMPAGE_only	4	4	11	0.491655	3.095795	chr21	35800548	35804643	LINE|L1|L1PBa1	+	chr21	35359455	35888925	STRG.281424.8	-	35359455,35461960,35580659,35864284,35886209	35372793,35462025,35580929,35864467,35888925	0.727273
testis_male_adult_37_years	chr11	95482403	95482417	95482416	+	High_confidence	6	6	13	0.581047	3.418296	chr11	95481778	95483422	Retroposon|SVA|SVA_D	+	chr11	95482405	95497553	AP001790.1|ENST00000511947.2	+	95482405,95483942,95497493	95482660,95484197,95497553	0.846154
testis_male_adult_37_years	chr7	88243763	88243798	88243787	+	High_confidence	2	2	8	0.357567	2.521641	chr7	88243681	88243850	LTR|ERVL|LTR33A	-	chr7	88243776	88292260	AC003991.1|ENST00000627345.2	+	88243776,88253042,88259708,88271762,88276955,88292187	88243832,88253160,88259826,88271870,88277169,88292260	0.875000
testis_male_adult_37_years	chr14	102088014	102088050	102088014	-	High_confidence	8	8	21	0.938614	3.431624	chr14	102087931	102088180	SINE|Alu|AluJb	-	chr14	102080737	102087191	HSP90AA1|ENST00000216281.12	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087191	0.857143
testis_male_adult_37_years	chr6	76593783	76593812	76593811	-	High_confidence	20	21	41	1.832532	4.589021	chr6	76593638	76594215	LINE|L1|L1PB1	+	chr6	76586063	76593823	STRG.115281.1	-	76586063,76593526	76586566,76593823	0.804878
testis_male_adult_37_years	chr20	20267817	20267837	20267836	-	High_confidence	8	8	29	1.296181	4.366096	chr20	20267631	20267948	LTR|ERV1|MER61A	-	chr20	20258406	20267809	AL121721.1|ENST00000460400.1	-	20258406,20259697,20267493	20258559,20259796,20267809	0.620690
testis_male_adult_37_years	chr10	123559948	123559967	123559966	+	High_confidence	60	60	98	4.380197	6.048266	chr10	123559841	123560044	DNA|hAT-Blackjack|MER63A	+	chr10	123559959	123562257	STRG.181166.2	+	123559959,123561827	123560196,123562257	0.938776
testis_male_adult_37_years	chr3	36453343	36453358	36453357	-	High_confidence	28	28	97	4.335501	5.392218	chr3	36453160	36454551	LTR|ERV1|LTR12C	+	chr3	36446364	36453351	STRG.52054.1	-	36446364,36453154	36447262,36453351	0.680412
testis_male_adult_37_years	chr8	69448247	69448281	69448262	-	High_confidence	4	4	11	0.491655	3.277613	chr8	69448185	69448365	DNA|DNA|UCON78	-	chr8	69424869	69448244	LINC01603|NR_110433.1	-	69424869,69429975,69447586,69447817	69425721,69430048,69447698,69448244	1.000000
testis_male_adult_37_years	chr4	168616752	168616792	168616772	-	RAMPAGE_only	15	16	44	1.966619	4.757546	chr4	168616671	168616804	DNA|hAT-Charlie|MER5A	+	chr4	168476066	168537786	DDX60L|ENST00000505150.5	-	168476066,168490357,168492665,168530560,168537640	168476120,168490450,168492885,168530702,168537786	0.727273
testis_male_adult_37_years	chr2	95121584	95121594	95121593	-	High_confidence	7	7	14	0.625742	3.392747	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.785714
testis_male_adult_37_years	chr1	214941133	214941159	214941158	+	RAMPAGE_only	3	3	8	0.357567	2.750000	chr1	214941150	214941223	SINE|tRNA-RTE|MamSINE1	-	chr1	214987564	214997303	STRG.19115.1	+	214987564,214997284	214987751,214997303	0.500000
testis_male_adult_37_years	chr5	27220460	27220484	27220460	+	High_confidence	7	7	22	0.983310	3.746439	chr5	27220348	27220658	SINE|Alu|AluY	-	chr5	27220410	27221194	STRG.91408.1	+	27220410	27221194	0.818182
testis_male_adult_37_years	chr3	15720646	15720657	15720656	-	High_confidence	21	22	52	2.324186	3.439083	chr3	15720286	15720858	LINE|L1|L1ME2z	-	chr3	15709667	15721122	ANKRD28|ENST00000492895.1	-	15709667,15711210,15712139,15713526,15720914	15709736,15711274,15712222,15713641,15721122	0.865385
testis_male_adult_37_years	chr16	62725607	62725622	62725607	+	High_confidence	3	3	9	0.402263	3.000000	chr16	62724697	62726074	LTR|ERV1|LTR12C	+	chr16	62725658	62727469	STRG.246171.1	+	62725658	62727469	0.555556
testis_male_adult_37_years	chr12	63746608	63746625	63746624	-	RAMPAGE_only	3	3	9	0.402263	2.500000	chr12	63746488	63746844	LTR|ERVL-MaLR|THE1B	-	chr12	63684747	63724935	AC084357.3|ENST00000543539.1	-	63684747,63688381,63715402,63724778	63685081,63688493,63715478,63724935	0.555556
testis_male_adult_37_years	chr20	322473	322496	322473	-	RAMPAGE_only	1	2	8	0.357567	2.807355	chr20	322321	322511	LINE|L2|L2a	+	chr20	320312	325234	NRSN2-AS1|ENST00000414676.5	-	320312,322377,325141	320781,322565,325234	0.875000
testis_male_adult_37_years	chr16	77657051	77657070	77657069	-	High_confidence	7	7	13	0.581047	3.418296	chr16	77656914	77657359	LTR|ERVL-MaLR|MLT1K	+	chr16	77656602	77656983	STRG.247701.1	-	77656602	77656983	0.769231
testis_male_adult_37_years	chr1	105618934	105618973	105618934	-	High_confidence	54	60	128	5.721074	5.223499	chr1	105618760	105619072	LINE|L2|L2a	+	chr1	105589695	105618935	LINC01676|ENST00000610126.2	-	105589695,105603276,105604162,105605934,105612899,105618858	105589785,105603558,105604265,105606089,105612944,105618935	0.929688
testis_male_adult_37_years	chr14	91425815	91425821	91425815	+	High_confidence	20	21	37	1.653748	4.764858	chr14	91425625	91425984	LTR|ERVL-MaLR|THE1B	+	chr14	91425113	91434373	STRG.230524.1	+	91425113	91434373	0.675676
testis_male_adult_37_years	chr18	7387902	7387903	7387902	+	High_confidence	13	13	14	0.625742	3.546594	chr18	7387645	7388092	LTR|ERV1|LTR12F	+	chr18	7387786	7394696	STRG.259253.1	+	7387786,7394373	7388115,7394696	0.571429
testis_male_adult_37_years	chr13	82257979	82258042	82258020	-	High_confidence	22	24	98	4.380197	5.799712	chr13	82257795	82259579	LTR|ERV1|LTR12C	+	chr13	82256722	82258667	STRG.218097.1	-	82256722	82258667	0.775510
testis_male_adult_37_years	chr13	63843409	63843446	63843445	-	High_confidence	4	5	12	0.536351	3.095795	chr13	63843244	63843845	LTR|ERV1|HERVE-int	+	chr13	63828846	63843441	OR7E104P|ENST00000607822.5	-	63828846,63831453,63839069,63839748,63843313	63829152,63831527,63839225,63841623,63843441	0.500000
testis_male_adult_37_years	chr8	83403738	83403739	83403738	+	High_confidence	65	65	67	2.994625	5.070455	chr8	83402757	83404051	LTR|ERV1|LTR12C	+	chr8	83403757	83408900	LINC01419|NR_122034.1	+	83403757,83407691	83404069,83408900	0.865672
testis_male_adult_37_years	chr7	134075886	134075900	134075886	+	RAMPAGE_only	4	4	11	0.491655	2.921928	chr7	134075700	134076030	LTR|ERVL-MaLR|MLT1I	+	chr7	134078338	134103080	STRG.138492.14	+	134078338,134100187	134098246,134103080	0.636364
testis_male_adult_37_years	chr14	53217896	53217928	53217925	+	RAMPAGE_only	226	235	869	38.840730	7.930134	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53216371	53726182	STRG.226332.6	+	53216371,53318030,53687198,53719111	53218055,53369501,53687374,53726182	0.632911
testis_male_adult_37_years	chr13	99496257	99496305	99496304	-	High_confidence	6	6	21	0.938614	4.392317	chr13	99496164	99496489	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.857143
testis_male_adult_37_years	chr17	51259178	51259202	51259178	-	High_confidence	2	3	14	0.625742	3.546594	chr17	51259052	51259224	LINE|CR1|L3	+	chr17	51191583	51259941	MBTD1|ENST00000405860.7	-	51191583,51193427,51195213,51201591,51202021,51202700,51203139,51203790,51206887,51209313,51217333,51218929,51220329,51225007,51259142,51259834	51193016,51193510,51195361,51201696,51202077,51202935,51203228,51203925,51207005,51209430,51217416,51219044,51220463,51225209,51259206,51259941	0.642857
testis_male_adult_37_years	chr20	58773373	58773411	58773378	+	High_confidence	33	33	102	4.558981	3.831054	chr20	58773316	58773794	LINE|L1|L1MC5	+	chr20	58773392	58774810	STRG.277506.1	+	58773392,58774366	58773523,58774810	0.980392
testis_male_adult_37_years	chr8	8781713	8781740	8781721	-	High_confidence	6	6	16	0.715134	3.640224	chr8	8780710	8781954	LTR|ERV1|LTR12C	-	chr8	8724781	8781918	STRG.142475.3	-	8724781,8757175,8781344	8725039,8757316,8781918	0.937500
testis_male_adult_37_years	chr14	95866474	95866486	95866474	-	High_confidence	5	5	12	0.536351	3.459432	chr14	95866046	95866596	LTR|ERVL-MaLR|MLT1F2	+	chr14	95855547	95866405	AL133167.1|ENST00000554889.1	-	95855547,95866029	95855977,95866405	0.666667
testis_male_adult_37_years	chr18	1099004	1099005	1099004	+	High_confidence	132	133	159	7.106647	5.343820	chr18	1098033	1099321	LTR|ERV1|LTR12C	+	chr18	1099007	1159335	AP005328.1|ENST00000581556.1	+	1099007,1133842,1159178	1099347,1133894,1159335	0.886792
testis_male_adult_37_years	chr17	73233765	73233822	73233797	+	High_confidence	17	17	78	3.486280	5.229793	chr17	73233581	73233900	SINE|Alu|AluSx	+	chr17	73233219	73241572	STRG.257311.8	+	73233219,73235475,73238300	73233968,73238277,73241572	0.987179
testis_male_adult_37_years	chr2	233448834	233448873	233448872	+	RAMPAGE_only	4	4	15	0.670438	3.324863	chr2	233448452	233449071	LTR|ERV1|MER51A	-	chr2	233438312	233472104	DGKD|ENST00000430834.1	+	233438312,233441886,233445622,233446711,233448086,233448275,233449102,233449981,233450921,233451963,233454356,233454762,233456898,233457220,233458283,233459756,233460193,233462347,233462642,233464163,233467085,233468422,233469370	233438379,233441995,233445762,233446796,233448181,233448375,233449376,233450131,233451050,233452060,233454464,233454873,233456995,233457328,233458397,233459891,233460345,233462459,233462735,233464283,233467203,233468553,233472104	0.933333
testis_male_adult_37_years	chr8	36779170	36779209	36779181	-	High_confidence	17	17	59	2.637058	5.437479	chr8	36779143	36779488	LTR|ERV1|MER61A	+	chr8	36537390	36779164	AC090809.1|ENST00000524132.5	-	36537390,36701820,36765056,36774145,36779037	36537476,36701893,36765205,36774280,36779164	0.677966
testis_male_adult_37_years	chr19	39839795	39839806	39839801	-	High_confidence	4	4	12	0.536351	3.277613	chr19	39839431	39839808	LINE|L2|L2a	-	chr19	39834457	39840441	FBL|ENST00000595545.5	-	39834457,39836555,39837710,39839034,39840232,39840413	39834813,39836668,39837843,39839205,39840327,39840441	0.916667
testis_male_adult_37_years	chr19	37465349	37465379	37465349	-	RAMPAGE_only	6	7	16	0.715134	3.373557	chr19	37464765	37465454	LINE|L2|L2a	+	chr19	37411154	37467229	ZNF569|ENST00000392149.6	-	37411154,37425867,37426251,37444906,37467086	37414419,37425963,37426378,37444964,37467229	0.750000
testis_male_adult_37_years	chr19	28965109	28965174	28965136	+	High_confidence	7	7	34	1.519660	4.343139	chr19	28964872	28965578	LINE|L1|L1MC5	+	chr19	28965130	28970670	STRG.267755.1	+	28965130,28965929,28969671,28970200,28970403	28965355,28969042,28969839,28970267,28970670	0.882353
testis_male_adult_37_years	chr7	111392925	111392959	111392958	-	High_confidence	5	5	12	0.536351	3.277613	chr7	111392522	111393282	LTR|ERVL|MER21C	-	chr7	110663425	111392915	IMMP2L|ENST00000450877.5	-	110663425,110886592,110963499,111391837,111392801	110663721,110886695,110963565,111392019,111392915	0.500000
testis_male_adult_37_years	chr15	78245687	78245688	78245687	-	High_confidence	555	556	618	27.622061	5.595443	chr15	78245271	78246702	LTR|ERV1|LTR12C	-	chr15	78225311	78245688	STRG.238439.8	-	78225311,78227554,78245268	78226605,78227628,78245688	0.944984
testis_male_adult_37_years	chr11	82643421	82643425	82643421	-	High_confidence	4	5	8	0.357567	2.750000	chr11	82643355	82643476	LINE|L2|L2c	+	chr11	82603742	82643419	AP000793.1|ENST00000527364.1	-	82603742,82618520,82642426,82643219	82604101,82618630,82642497,82643419	1.000000
testis_male_adult_37_years	chr3	32940748	32940749	32940748	+	High_confidence	312	313	320	14.302685	5.706743	chr3	32939500	32941155	LTR|ERV1|LTR12C	+	chr3	32940064	32943814	STRG.51729.1	+	32940064,32940880	32940153,32943814	0.940625
testis_male_adult_37_years	chr2	227534897	227534965	227534916	+	RAMPAGE_only	10	12	47	2.100707	5.054381	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.893617
testis_male_adult_37_years	chr18	48662918	48662935	48662934	+	RAMPAGE_only	21	23	76	3.396888	5.444027	chr18	48662701	48663071	LINE|L1|L1ME3A	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	0.710526
testis_male_adult_37_years	chr1	67138870	67138899	67138870	+	High_confidence	9	9	24	1.072701	4.023137	chr1	67138809	67138927	LTR|ERVL-MaLR|MLT1K	+	chr1	67138906	67259167	IL23R|ENST00000637002.1	+	67138906,67168091,67169341,67182835,67200741,67206909,67219573,67236712,67240178,67255836,67258477	67139161,67168190,67169638,67182959,67200897,67207055,67219730,67236802,67240281,67255927,67259167	0.875000
testis_male_adult_37_years	chr3	190965146	190965162	190965161	+	High_confidence	4	4	10	0.446959	3.321928	chr3	190964647	190965526	LINE|L1|L1HS	-	chr3	190965050	190965749	STRG.68044.1	+	190965050	190965749	0.800000
testis_male_adult_37_years	chr13	46187627	46187654	46187627	-	High_confidence	5	5	14	0.625742	3.378783	chr13	46186832	46188146	LINE|L1|HAL1	-	chr13	46158855	46187636	STRG.214190.7	-	46158855,46159598,46182110,46183908,46187446	46158989,46159686,46182225,46183972,46187636	0.714286
testis_male_adult_37_years	chr5	50443255	50443259	50443258	-	High_confidence	4	6	12	0.536351	3.459432	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.500000
testis_male_adult_37_years	chr21	25779130	25779131	25779130	+	High_confidence	157	161	204	9.117962	5.616913	chr21	25778185	25779539	LTR|ERV1|LTR12C	+	chr21	25779122	25855421	STRG.280413.2	+	25779122,25816863,25843819	25813922,25816985,25855421	0.955882
testis_male_adult_37_years	chr18	11431994	11431995	11431994	-	High_confidence	69	72	93	4.156718	5.882045	chr18	11431680	11432845	LTR|ERV1|LTR12E	-	chr18	11376735	11431988	STRG.259446.1	-	11376735,11431677	11378406,11431988	0.516129
testis_male_adult_37_years	chr22	39021125	39021156	39021155	+	High_confidence	22	22	112	5.005940	5.501271	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.991071
testis_male_adult_37_years	chrX	103577211	103577212	103577211	+	High_confidence	7	10	10	0.446959	3.121928	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
testis_male_adult_37_years	chr13	34753482	34753507	34753482	+	High_confidence	5	5	19	0.849222	3.681881	chr13	34753274	34753946	LTR|ERV1|LTR12_	+	chr13	34753521	34754071	STRG.213171.1	+	34753521	34754071	0.947368
testis_male_adult_37_years	chr19	44914307	44914322	44914321	+	High_confidence	5	5	9	0.402263	2.947703	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.777778
testis_male_adult_37_years	chr20	57350970	57350981	57350980	+	High_confidence	6	6	13	0.581047	3.180833	chr20	57350953	57351071	SINE|Alu|AluSx	-	chr20	57351009	57379211	RAE1|ENST00000395841.6	+	57351009,57354031,57354711,57356445,57365355,57366806,57367007,57368704,57373474,57373662,57374606,57378012	57351422,57354128,57354816,57356538,57365442,57366893,57367079,57368812,57373581,57373738,57374801,57379211	1.000000
testis_male_adult_37_years	chr11	59565891	59565903	59565891	-	High_confidence	2	2	8	0.357567	2.750000	chr11	59565731	59565865	SINE|Alu|AluSz	-	chr11	59561145	59566074	AP000442.1|ENST00000533552.2	-	59561145,59562518,59563813,59565014,59565452,59565764	59561243,59562584,59563906,59565100,59565568,59566074	0.500000
testis_male_adult_37_years	chr4	56308928	56308971	56308928	+	RAMPAGE_only	25	25	52	2.324186	5.329096	chr4	56308920	56309133	LINE|L2|L2a	-	chr4	56272403	56328092	KIAA1211|ENST00000541073.5	+	56272403,56298213,56301225,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56272492,56298349,56301247,56307699,56310734,56313379,56316689,56323567,56324266,56328092	0.750000
testis_male_adult_37_years	chr6	152221948	152221949	152221948	-	RAMPAGE_only	6	6	6	0.268175	2.584963	chr6	152221854	152222323	LTR|ERV1|LTR10B1	+	chr6	152121768	152225837	SYNE1|ENST00000367251.7	-	152121768,152132121,152133275,152135103,152136617,152139949,152141202,152143622,152145486,152148044,152149476,152151552,152151958,152154891,152155909,152164162,152176393,152180135,152189251,152201823,152206167,152207971,152211493,152213611,152214905,152218256,152219002,152220841,152221425,152224493,152225720	152122676,152132214,152133488,152135232,152136818,152140161,152141329,152143765,152145555,152148378,152149668,152151690,152152141,152155042,152156097,152164325,152176560,152180294,152189407,152201949,152206362,152208206,152211588,152213759,152215060,152218403,152219185,152221046,152221559,152224664,152225837	0.500000
testis_male_adult_37_years	chr11	94975026	94975048	94975047	-	RAMPAGE_only	5	5	16	0.715134	3.625000	chr11	94974577	94975336	LINE|L2|L2a	+	chr11	94962621	94973612	CWC15|NM_016403.3	-	94962621,94966294,94969988,94970976,94971374,94972054,94973497	94963514,94966413,94970096,94971065,94971487,94972193,94973612	0.687500
testis_male_adult_37_years	chr7	143395679	143395680	143395679	-	High_confidence	5	5	7	0.312871	2.807355	chr7	143395678	143395774	LINE|L2|L2b	+	chr7	143394209	143395601	EPHA1|ENST00000465208.5	-	143394209,143394807,143395120,143395318	143394343,143395014,143395182,143395601	0.857143
testis_male_adult_37_years	chr12	17011417	17011418	17011417	+	High_confidence	14	14	15	0.670438	3.235926	chr12	17011163	17011732	LTR|ERV1|LTR12_	+	chr12	17011253	17011945	STRG.199135.1	+	17011253	17011945	0.866667
testis_male_adult_37_years	chr5	34683828	34683853	34683852	+	High_confidence	4	4	14	0.625742	3.182006	chr5	34683732	34684026	SINE|Alu|AluY	-	chr5	34683774	34803768	STRG.92346.14	+	34683774,34686871,34757467,34795938,34803711	34684425,34686955,34757598,34796027,34803768	0.928571
testis_male_adult_37_years	chr10	47095792	47095793	47095792	-	High_confidence	13	13	13	0.581047	3.392747	chr10	47095765	47096242	LTR|ERV1|LTR12	+	chr10	47094124	47095798	STRG.173971.1	-	47094124	47095798	0.923077
testis_male_adult_37_years	chr12	10363706	10363707	10363706	+	High_confidence	151	156	190	8.492219	6.332669	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.831579
testis_male_adult_37_years	chr2	112565788	112565833	112565832	+	RAMPAGE_only	9	11	35	1.564356	4.862576	chr2	112565729	112565937	LTR|ERVL|MER21B	-	chr2	112564313	112572598	POLR1B|ENST00000484574.1	+	112564313,112567966,112568745,112572561	112564499,112568137,112568902,112572598	0.685714
testis_male_adult_37_years	chr2	1134265	1134266	1134265	-	High_confidence	23	23	27	1.206789	4.208410	chr2	1133854	1134983	LTR|ERV1|LTR12C	-	chr2	1133904	1134276	STRG.22988.1	-	1133904	1134276	0.888889
testis_male_adult_37_years	chr5	118576949	118576958	118576957	+	RAMPAGE_only	4	5	8	0.357567	2.521641	chr5	118576841	118577155	SINE|Alu|AluY	-	chr5	118575574	118581324	LINC02216|ENST00000513366.1	+	118575574,118577039,118579653,118580531,118581268	118575686,118577194,118579794,118580648,118581324	0.500000
testis_male_adult_37_years	chr5	50799792	50799819	50799818	+	RAMPAGE_only	3	3	14	0.625742	3.324863	chr5	50799661	50800035	LTR|ERVL-MaLR|MLT1A0	+	chr5	50667892	50842342	PARP8|ENST00000503561.7	+	50667892,50750150,50759642,50761820,50763147,50778068,50778559,50788522,50794206,50794852,50796981,50797137,50815431,50822334,50824907,50826754,50827943,50828311,50829891,50832780,50833978,50834841,50841965	50668125,50750188,50759732,50761898,50763242,50778129,50778650,50788589,50794332,50795417,50797032,50797233,50815524,50822400,50824975,50826803,50828056,50828384,50829961,50832854,50834048,50835015,50842342	0.714286
testis_male_adult_37_years	chr17	59107058	59107144	59107121	+	High_confidence	3	3	15	0.670438	3.906891	chr17	59107089	59107281	DNA|hAT-Charlie|MER5A	-	chr17	59106474	59108176	STRG.255975.1	+	59106474	59108176	0.733333
testis_male_adult_37_years	chr4	44016697	44016701	44016697	+	High_confidence	10	10	19	0.849222	3.642150	chr4	44016424	44016724	LTR|ERV1|MER51A	-	chr4	44016860	44020256	LINC02475|ENST00000507639.1	+	44016860,44019750	44017062,44020256	0.894737
testis_male_adult_37_years	chr7	123925227	123925269	123925232	+	High_confidence	4	4	23	1.028006	3.914866	chr7	123924480	123925417	LTR|ERV1|MER34-int	-	chr7	123925231	123960046	SPAM1|NM_001174044.1	+	123925231,123949871,123953364,123954996,123959483	123925531,123949983,123954524,123955086,123960046	0.913043
testis_male_adult_37_years	chr11	33141750	33141753	33141750	-	RAMPAGE_only	5	5	11	0.491655	2.921928	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33084583	33161465	CSTF3|ENST00000323959.8	-	33084583,33085712,33085894,33086987,33090531,33092270,33096305,33096834,33098689,33099033,33099607,33102176,33103106,33105566,33105882,33105997,33107902,33108385,33141666,33141884,33161298	33085289,33085773,33085989,33087141,33090727,33092340,33096408,33096978,33098764,33099150,33099717,33102339,33103184,33105693,33105917,33106064,33108000,33108418,33141762,33141986,33161465	0.818182
testis_male_adult_37_years	chr2	207559121	207559151	207559135	+	High_confidence	16	16	70	3.128712	5.465924	chr2	207558942	207559254	LINE|L2|L2b	+	chr2	207559121	207571777	CREB1|ENST00000480189.5	+	207559121,207560225,207567462,207570178,207571733	207559255,207560372,207567563,207570321,207571777	0.700000
testis_male_adult_37_years	chr6	8101995	8102016	8102010	-	High_confidence	9	9	37	1.653748	4.614997	chr6	8101821	8102031	LINE|L2|L2b	+	chr6	8097306	8102046	EEF1E1|ENST00000488226.2	-	8097306,8101764	8097467,8102046	0.810811
testis_male_adult_37_years	chr12	8681676	8681677	8681676	+	High_confidence	6	6	8	0.357567	3.000000	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.500000
testis_male_adult_37_years	chr6	68040666	68040690	68040689	+	High_confidence	25	25	62	2.771145	4.918086	chr6	68040221	68040931	LTR|ERV1|LTR30	-	chr6	68040429	68041648	STRG.114234.3	+	68040429	68041648	0.693548
testis_male_adult_37_years	chr3	179681639	179681670	179681665	+	RAMPAGE_only	39	49	105	4.693069	5.791947	chr3	179681222	179681750	LTR|ERV1|LTR6A	-	chr3	179653692	179784406	USP13|ENST00000496897.5	+	179653692,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653750,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179784406	0.895238
testis_male_adult_37_years	chr10	77618788	77618791	77618790	+	High_confidence	5	8	9	0.402263	3.000000	chr10	77618725	77618867	DNA|hAT-Blackjack|MER63B	+	chr10	77619520	77621020	STRG.176072.1	+	77619520,77620019	77619839,77621020	0.666667
testis_male_adult_37_years	chr13	23248929	23248940	23248929	+	High_confidence	14	14	28	1.251485	4.137538	chr13	23248710	23249016	SINE|Alu|AluY	+	chr13	23248642	23325025	STRG.212307.2	+	23248642,23250629,23279358,23295414,23320636,23324367	23248777,23250717,23279478,23295487,23320760,23325025	0.928571
testis_male_adult_37_years	chr1	192986971	192986972	192986971	-	RAMPAGE_only	6	6	7	0.312871	2.584963	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192955637	192988622	STRG.16958.4	-	192955637,192986717	192957422,192988622	0.857143
testis_male_adult_37_years	chrX	51511097	51511156	51511100	-	High_confidence	13	14	99	4.424893	6.037143	chrX	51510925	51511222	SINE|Alu|AluSq2	+	chrX	51497693	51511174	STRG.291571.2	-	51497693,51505880,51510947	51505793,51505969,51511174	0.858586
testis_male_adult_37_years	chr3	44765490	44765511	44765490	-	RAMPAGE_only	4	4	10	0.446959	3.321928	chr3	44765335	44765851	LINE|L1|L1M4b	-	chr3	44748743	44761681	KIAA1143|NM_001320334.1	-	44748743,44754223,44761494	44753607,44754368,44761681	0.800000
testis_male_adult_37_years	chr12	19836161	19836168	19836161	+	RAMPAGE_only	2	3	8	0.357567	2.807355	chr12	19835957	19836738	LTR|ERV1|LTR1A2	+	chr12	19775450	20009937	AC024901.1|ENST00000535764.1	+	19775450,19923197,19944378,20008644,20009720	19775603,19923256,19944544,20008767,20009937	0.500000
testis_male_adult_37_years	chr14	22821371	22821376	22821371	-	High_confidence	6	6	12	0.536351	3.095795	chr14	22821278	22821399	LINE|L2|L2a	+	chr14	22813078	22822130	STRG.222185.7	-	22813078,22815319,22821121	22813440,22815451,22822130	0.833333
testis_male_adult_37_years	chr15	80059915	80059933	80059918	+	High_confidence	130	148	348	15.554170	5.140563	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.971264
testis_male_adult_37_years	chr5	3452836	3452837	3452836	+	High_confidence	7	7	9	0.402263	2.725481	chr5	3452788	3452851	SINE|MIR|MIR3	-	chr5	3452815	3461660	LINC02162|ENST00000512521.1	+	3452815,3453704,3461316	3452962,3453787,3461660	0.666667
testis_male_adult_37_years	chr2	67086404	67086416	67086407	+	High_confidence	2	2	9	0.402263	2.750000	chr2	67086398	67086624	LTR|ERVL-MaLR|MLT1B	+	chr2	67086440	67086775	STRG.30591.1	+	67086440	67086775	0.555556
testis_male_adult_37_years	chr12	7863016	7863017	7863016	+	High_confidence	107	107	111	4.961244	4.815066	chr12	7862328	7863432	LTR|ERV1|LTR12C	+	chr12	7863023	7863602	STRG.197836.1	+	7863023	7863602	0.954955
testis_male_adult_37_years	chr6	100945019	100945060	100945019	+	RAMPAGE_only	3	3	12	0.536351	3.584963	chr6	100945029	100945720	LTR|ERVK|HERVK22-int	+	chr6	100881470	101687893	STRG.117965.5	+	100881470,100891997,100962685,101130628,101131634,101205076,101244629,101398984,101621948,101626379,101676622,101682552,101686179	100881654,100892045,100962751,101130719,101131697,101205143,101244656,101399392,101622116,101626637,101676804,101682606,101687893	0.500000
testis_male_adult_37_years	chr13	46467871	46467872	46467871	-	High_confidence	7	8	11	0.491655	3.027169	chr13	46467669	46468268	LTR|ERV1|HERVE-int	+	chr13	46455134	46467872	LINC01198|ENST00000648986.1	-	46455134,46457839,46460944,46464674,46465842,46466608,46467672	46455511,46457913,46461170,46464819,46465987,46466709,46467872	1.000000
testis_male_adult_37_years	chr12	105272519	105272534	105272519	+	High_confidence	4	4	10	0.446959	3.169925	chr12	105272060	105272551	LTR|ERV1|MER51A	-	chr12	105272475	105275641	STRG.208952.10	+	105272475	105275641	0.800000
testis_male_adult_37_years	chr17	68558379	68558393	68558392	-	High_confidence	18	18	32	1.430269	4.631616	chr17	68558334	68558718	LTR|ERVL-MaLR|MSTB	+	chr17	68535112	68558390	FAM20A|ENST00000226094.9	-	68535112,68539336,68539884,68540848,68541984,68542693,68543628,68551872,68554776,68555558,68558329	68537741,68539396,68539966,68540983,68542165,68542809,68543717,68551951,68554827,68555743,68558390	0.625000
testis_male_adult_37_years	chr3	113828171	113828172	113828171	+	High_confidence	25	25	34	1.519660	4.090018	chr3	113827983	113828492	LTR|ERVL-MaLR|MLT1F	+	chr3	113828181	113945560	GRAMD1C|ENST00000479212.5	+	113828181,113844502,113869506,113875483,113876164,113882751,113901030,113904139,113908957,113913072,113915700,113930713,113933510,113934431,113936265,113938085,113939885,113940239,113945397	113828279,113844649,113869591,113875587,113876260,113882832,113901146,113904272,113909120,113913160,113915838,113930832,113933653,113934535,113936442,113938143,113939996,113940345,113945560	0.852941
testis_male_adult_37_years	chr4	2935306	2935343	2935342	+	High_confidence	2	3	7	0.312871	2.521641	chr4	2935271	2935512	LTR|ERVL|MLT2F	-	chr4	2935545	2942051	NOP14-AS1|ENST00000512712.2	+	2935545,2937751,2940301	2936890,2937844,2942051	1.000000
testis_male_adult_37_years	chr7	18153503	18153508	18153507	+	RAMPAGE_only	3	3	7	0.312871	2.584963	chr7	18153210	18153728	LTR|ERV1|MER51A	-	chr7	18151774	18327612	HDAC9|ENST00000425071.5	+	18151774,18162228,18325511,18327448	18151879,18162349,18325592,18327612	0.857143
testis_male_adult_37_years	chr17	8758504	8758554	8758545	-	High_confidence	12	13	48	2.145403	4.727267	chr17	8758497	8758567	DNA|hAT-Ac|OldhAT1	+	chr17	8753105	8758559	SPDYE4|ENST00000328794.10	-	8753105,8753320,8755519,8756377,8757261,8758273	8753197,8753489,8755605,8756436,8757492,8758559	0.895833
testis_male_adult_37_years	chr22	29553782	29553808	29553796	+	High_confidence	17	17	52	2.324186	4.805533	chr22	29553837	29553941	LINE|L2|L2a	+	chr22	29553965	29555184	STRG.284563.1	+	29553965	29555184	0.923077
testis_male_adult_37_years	chr21	27638632	27638651	27638649	+	High_confidence	7	14	23	1.028006	4.061482	chr21	27638476	27638663	LINE|L1|HAL1	+	chr21	27638692	27653491	LINC01673|ENST00000426418.1	+	27638692,27648664,27653355	27638923,27648765,27653491	0.826087
testis_male_adult_37_years	chr6	53051973	53052012	53052003	+	High_confidence	3	4	19	0.849222	3.932138	chr6	53051931	53052290	LINE|L1|L1PA8A	-	chr6	53051990	53073638	FBXO9|ENST00000459845.6	+	53051990,53057762,53067904,53071056,53073480	53052033,53057824,53068006,53071143,53073638	0.684211
testis_male_adult_37_years	chr15	58851957	58851958	58851957	+	RAMPAGE_only	14	14	14	0.625742	2.753434	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	1.000000
testis_male_adult_37_years	chr3	190678133	190678134	190678133	+	High_confidence	48	48	52	2.324186	4.866162	chr3	190677874	190678308	LTR|ERV1|LTR12_	+	chr3	190678229	190680902	STRG.67937.1	+	190678229	190680902	0.826923
testis_male_adult_37_years	chr12	17007606	17007637	17007636	-	RAMPAGE_only	7	9	33	1.474964	4.389557	chr12	17007441	17008770	LTR|ERV1|LTR12C	+	chr12	16946766	16983323	STRG.199130.1	-	16946766,16983118	16947006,16983323	0.696970
testis_male_adult_37_years	chr5	38403540	38403548	38403540	+	High_confidence	13	13	32	1.430269	3.693345	chr5	38403268	38403777	DNA|TcMar-Tigger|Tigger7	-	chr5	38403540	38464388	EGFLAM|ENST00000336740.10	+	38403540,38406125,38406827,38407804,38409003,38412503,38418065,38424966,38427008,38431176,38435136,38438274,38448300,38451314,38458310,38462907,38463831	38403891,38406241,38407146,38407905,38409104,38412648,38418255,38425092,38427252,38431288,38435253,38438455,38448379,38451458,38458394,38463011,38464388	0.812500
testis_male_adult_37_years	chr4	74881175	74881229	74881228	+	High_confidence	34	35	156	6.972559	6.046444	chr4	74881040	74881816	LINE|L2|L2b	-	chr4	74881107	74882919	STRG.76200.1	+	74881107,74882853	74881621,74882919	0.916667
testis_male_adult_37_years	chr19	3306705	3306760	3306759	-	RAMPAGE_only	2	4	11	0.491655	3.321928	chr19	3306638	3306735	LINE|L2|L2a	-	chr19	3296764	3303003	AC010649.1|ENST00000592230.1	-	3296764,3302795	3297010,3303003	0.909091
testis_male_adult_37_years	chr19	47227193	47227221	47227216	-	High_confidence	3	3	12	0.536351	2.855389	chr19	47227045	47227213	SINE|MIR|MIR1_Amn	-	chr19	47221644	47227189	BBC3|ENST00000598636.1	-	47221644,47226563	47221918,47227189	1.000000
testis_male_adult_37_years	chr8	30812360	30812454	30812453	-	High_confidence	11	11	47	2.100707	4.986189	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.957447
testis_male_adult_37_years	chr19	15256206	15256252	15256207	-	RAMPAGE_only	9	13	35	1.564356	4.093150	chr19	15256082	15256220	LINE|L1|L1M5	-	chr19	15235520	15272981	STRG.267106.5	-	15235520,15238742,15239058,15239391,15239658,15242899,15244230,15244709,15256063,15256963,15263419,15264403,15265353,15267415,15268904,15272814	15238445,15238980,15239264,15239522,15240022,15243487,15244600,15255592,15256263,15257173,15263548,15264766,15265643,15267551,15269042,15272981	1.000000
testis_male_adult_37_years	chr2	238554633	238554676	238554650	-	High_confidence	20	21	63	2.815841	5.540617	chr2	238554483	238554778	LTR|ERVL-MaLR|MLT1A0	-	chr2	238529261	238554908	STRG.46898.1	-	238529261,238554473	238551547,238554908	0.920635
testis_male_adult_37_years	chrY	3786832	3786856	3786850	+	High_confidence	17	17	64	2.860537	5.320160	chrY	3785809	3788528	LTR|ERV1|LTR46-int	-	chrY	3786270	3805949	STRG.298449.1	+	3786270,3800650,3803828,3804384	3786390,3800746,3803952,3805949	0.875000
testis_male_adult_37_years	chr12	34127401	34127402	34127401	-	High_confidence	17	17	18	0.804526	3.734522	chr12	34127287	34127780	LTR|ERV1|LTR15	-	chr12	34120515	34127555	STRG.201215.1	-	34120515,34127065	34120796,34127555	0.777778
testis_male_adult_37_years	chr15	90511415	90511419	90511415	+	High_confidence	3	3	8	0.357567	2.750000	chr15	90510776	90511739	LTR|ERV1|LTR12D	+	chr15	90511264	90518649	STRG.239641.1	+	90511264,90512399,90518542	90511703,90512604,90518649	0.750000
testis_male_adult_37_years	chr1	54003630	54003631	54003630	-	High_confidence	245	245	247	11.039885	5.345206	chr1	54003216	54004787	LTR|ERV1|LTR12C	-	chr1	54000758	54003646	STRG.5558.1	-	54000758,54003146	54001632,54003646	0.987854
testis_male_adult_37_years	chr17	70389475	70389476	70389475	+	High_confidence	29	29	40	1.787836	4.262815	chr17	70389280	70389528	LTR|ERVL-MaLR|THE1A	+	chr17	70389494	70390808	STRG.256958.1	+	70389494	70390808	0.875000
testis_male_adult_37_years	chr2	9554953	9554971	9554965	-	High_confidence	16	24	49	2.190099	5.209963	chr2	9554869	9555063	DNA|hAT-Tip100?|MamRep1879	-	chr2	9488636	9554729	ADAM17|ENST00000648548.1	-	9488636,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152,9551474,9554708	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526264,9527954,9535922,9536828,9543285,9551757,9554729	0.877551
testis_male_adult_37_years	chr4	184714104	184714108	184714107	-	High_confidence	33	33	88	3.933238	4.843067	chr4	184714076	184714826	LINE|L1|L1MEf	+	chr4	184698193	184713941	CENPU|ENST00000506535.1	-	184698193,184702088,184702362,184710071,184710325,184712943,184713868	184698318,184702136,184702441,184710180,184710406,184713013,184713941	0.704545
testis_male_adult_37_years	chr11	70165172	70165173	70165172	+	High_confidence	11	11	17	0.759830	2.675698	chr11	70164951	70165389	LTR|ERVL-MaLR|MLT1C	-	chr11	70165361	70180045	ANO1|ENST00000529636.5	+	70165361,70167241,70170886,70180003	70165570,70167387,70171039,70180045	0.941176
testis_male_adult_37_years	chr9	39810023	39810064	39810033	-	High_confidence	23	23	80	3.575671	5.141399	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803190	39810013	STRG.160954.2	-	39803190,39809485,39809730	39803859,39809615,39810013	0.900000
testis_male_adult_37_years	chr6	26474339	26474346	26474345	+	RAMPAGE_only	7	8	13	0.581047	3.180833	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.846154
testis_male_adult_37_years	chr12	41005042	41005046	41005045	+	High_confidence	9	10	23	1.028006	4.095795	chr12	41002855	41006306	LINE|L1|L1PA13	-	chr12	41005038	41027918	CNTN1|ENST00000550305.1	+	41005038,41014227,41016681,41020336,41025149,41027856	41005110,41014298,41016916,41020440,41025336,41027918	0.913043
testis_male_adult_37_years	chr10	123560332	123560356	123560355	+	High_confidence	19	40	110	4.916548	5.672389	chr10	123560156	123560713	LINE|L2|L2a	-	chr10	123560341	123562257	STRG.181166.3	+	123560341,123561827	123560573,123562257	0.981818
testis_male_adult_37_years	chr1	165892627	165892641	165892627	+	High_confidence	47	65	122	5.452899	6.159571	chr1	165892277	165892629	LTR|ERVL|LTR33C	-	chr1	165892651	165908100	UCK2|ENST00000462329.5	+	165892651,165896189,165903181,165905920,165907683	165892774,165896332,165903279,165905969,165908100	0.983607
testis_male_adult_37_years	chr21	35691312	35691313	35691312	-	RAMPAGE_only	5	6	8	0.357567	2.500000	chr21	35691113	35691413	SINE|Alu|AluSz6	+	chr21	35359455	35888925	STRG.281424.8	-	35359455,35461960,35580659,35864284,35886209	35372793,35462025,35580929,35864467,35888925	0.625000
testis_male_adult_37_years	chr1	15171642	15171678	15171677	-	High_confidence	2	3	7	0.312871	2.521641	chr1	15171283	15171781	LTR|ERVL|LTR33C	-	chr1	15168473	15171624	C1orf195|NM_001278501.1	-	15168473,15171180,15171610	15168777,15171315,15171624	0.714286
testis_male_adult_37_years	chr11	321229	321258	321257	-	High_confidence	4	4	24	1.072701	4.277613	chr11	321227	321340	SINE|Alu|AluY	+	chr11	319772	321340	IFITM3|ENST00000526811.4	-	319772,320564,321223	319990,320772,321340	0.500000
testis_male_adult_37_years	chr4	117834340	117834364	117834363	+	High_confidence	6	6	13	0.581047	3.546594	chr4	117832831	117835115	LTR|ERV1|HUERS-P2-int	-	chr4	117834400	117869948	LINC02264|ENST00000442020.1	+	117834400,117869458	117834486,117869948	0.846154
testis_male_adult_37_years	chr14	23261141	23261192	23261191	+	High_confidence	10	10	28	1.251485	4.162295	chr14	23260891	23261480	LTR|ERV1|LTR10C	-	chr14	23261305	23273402	RNF212B|ENST00000492355.5	+	23261305,23262927,23264622,23268923,23269862,23270599,23272822,23273366	23261329,23262970,23264671,23268963,23269960,23270661,23272977,23273402	0.535714
testis_male_adult_37_years	chr3	72995653	72995654	72995653	+	RAMPAGE_only	11	11	12	0.536351	3.095795	chr3	72995642	72995840	SINE|MIR|MIRb	-	chr3	72996742	73069201	PPP4R2|NM_001318026.1	+	72996742,72998076,73047185,73059036,73061022,73063672,73064002,73064851,73065396	72996800,72998158,73047356,73059130,73061060,73063747,73064146,73065141,73069201	0.916667
testis_male_adult_37_years	chr5	151687321	151687325	151687321	-	High_confidence	4	4	9	0.402263	2.947703	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151662487	151687309	STRG.103604.1	-	151662487,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687309	0.888889
testis_male_adult_37_years	chr1	23981067	23981068	23981067	-	High_confidence	7	7	8	0.357567	2.807355	chr1	23981057	23981194	DNA|hAT-Charlie|Charlie1b	-	chr1	23966444	23980927	SRSF10|ENST00000341154.10	-	23966444,23971572,23971849,23974973,23977910,23978652,23980190	23967723,23971626,23972012,23975051,23978273,23978817,23980927	0.875000
testis_male_adult_37_years	chrY	21138615	21138633	21138632	+	High_confidence	9	9	23	1.028006	3.740953	chrY	21138292	21138825	LTR|ERV1|MER61F	+	chrY	21138628	21148354	STRG.299184.1	+	21138628	21148354	0.913043
testis_male_adult_37_years	chr4	94170695	94170696	94170695	+	High_confidence	27	27	27	1.206789	4.282484	chr4	94169658	94171011	LTR|ERV1|LTR12C	+	chr4	94170712	94171272	STRG.78247.1	+	94170712	94171272	0.888889
testis_male_adult_37_years	chr5	124962954	124962962	124962961	+	High_confidence	3	3	8	0.357567	2.500000	chr5	124962834	124963171	LTR|ERV1|MER61A	+	chr5	124961971	124965220	STRG.100548.1	+	124961971	124965220	0.625000
testis_male_adult_37_years	chr5	84078796	84078839	84078838	-	High_confidence	8	8	31	1.385573	2.788595	chr5	84078817	84079561	LTR|ERVL|MER21C	+	chr5	84047605	84078828	EDIL3|ENST00000510271.1	-	84047605,84060299,84064699,84066450,84078628	84048272,84060484,84064844,84066606,84078828	0.967742
testis_male_adult_37_years	chr7	29334458	29334518	29334517	+	RAMPAGE_only	12	12	40	1.787836	4.496815	chr7	29334496	29334783	SINE|Alu|AluJo	+	chr7	29288880	29400781	CHN2|ENST00000409922.5	+	29288880,29354624,29367931,29393678,29398372,29400542	29289140,29354663,29367987,29393710,29398486,29400781	0.750000
testis_male_adult_37_years	chr17	555656	555657	555656	-	RAMPAGE_only	63	66	79	3.530975	5.091062	chr17	555440	555634	SINE|Alu|AluSx	-	chr17	508667	562686	STRG.249848.6	-	508667,514010,519825,521600,532841,537027,551871,553379,560425,562502	513688,519298,519930,521738,532911,537176,551950,553462,560573,562686	0.873418
testis_male_adult_37_years	chr16	72627719	72627732	72627719	-	RAMPAGE_only	7	8	13	0.581047	3.546594	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72416059	72664947	STRG.247466.17	-	72416059,72522552,72523331,72540577,72555264,72570450,72664891	72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.692308
testis_male_adult_37_years	chr1	15340614	15340669	15340614	+	RAMPAGE_only	12	12	79	3.530975	5.417210	chr1	15340279	15340713	LTR|ERVL-MaLR|MLT1H	-	chr1	15341760	15384558	FHAD1|ENST00000444385.5	+	15341760,15345082,15345415,15352876,15358109,15360477,15362641,15365826,15367462,15369369,15374501,15375602,15380700,15381230,15382027,15383155	15341888,15345190,15345523,15352984,15358283,15360703,15362726,15365933,15367622,15369502,15374631,15375730,15380796,15381451,15382193,15384558	0.949367
testis_male_adult_37_years	chr11	77175254	77175303	77175302	+	High_confidence	10	11	32	1.430269	4.562500	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
testis_male_adult_37_years	chr1	187550745	187550748	187550745	-	High_confidence	112	112	178	7.955869	5.300773	chr1	187550320	187551453	LTR|ERV1|LTR12D	-	chr1	187545452	187550773	STRG.16293.1	-	187545452,187547641,187550308	187546640,187547758,187550773	0.988764
testis_male_adult_37_years	chr9	4544916	4544918	4544916	-	RAMPAGE_only	4	8	9	0.402263	3.000000	chr9	4544732	4545112	LTR|ERVL-MaLR|THE1D	-	chr9	4539674	4541216	STRG.156619.1	-	4539674	4541216	0.555556
testis_male_adult_37_years	chr22	25671278	25671300	25671299	+	RAMPAGE_only	3	3	7	0.312871	2.807355	chr22	25671071	25671363	SINE|Alu|AluYc3	+	chr22	25565106	25684568	GRK3|ENST00000455558.2	+	25565106,25604376,25661575,25663629,25667738,25672295,25674436,25678815,25684518	25565153,25604453,25661677,25663704,25667800,25672347,25674528,25678915,25684568	0.714286
testis_male_adult_37_years	chr19	205539	205556	205539	-	High_confidence	4	4	14	0.625742	3.521641	chr19	205087	205507	DNA|hAT-Charlie|MER1A	-	chr19	201359	205598	LINC01002|ENST00000631484.1	-	201359,201755,203874,205169,205454	201662,201813,204065,205227,205598	1.000000
testis_male_adult_37_years	chr13	45383071	45383072	45383071	+	High_confidence	11	11	11	0.491655	3.027169	chr13	45382636	45383238	LTR|ERV1|HERVE-int	-	chr13	45382824	45391352	TPT1-AS1|ENST00000520432.1	+	45382824,45383759,45389734,45391031	45383235,45383838,45389820,45391352	0.727273
testis_male_adult_37_years	chr6	115643882	115643894	115643882	-	High_confidence	2	2	7	0.312871	2.584963	chr6	115643879	115644641	LTR|ERVL|MER21A	+	chr6	115633541	115643835	LOC105377962|NR_134602.1	-	115633541,115634139,115636221,115643804	115633772,115634347,115636264,115643835	0.571429
testis_male_adult_37_years	chr3	20342467	20342493	20342492	+	High_confidence	6	6	16	0.715134	3.750000	chr3	20342255	20342545	LINE|L2|L2b	+	chr3	20342467	20350928	LOC101927829|NR_110814.1	+	20342467,20345659,20346024,20347996,20350714	20344036,20345782,20346066,20348089,20350928	1.000000
testis_male_adult_37_years	chr13	102367460	102367506	102367496	+	High_confidence	9	9	23	1.028006	3.522572	chr13	102367044	102367593	LTR|ERVL-MaLR|MLT1F	-	chr13	102367529	102373666	FGF14-AS1|NR_125912.1	+	102367529,102373423	102367641,102373666	0.739130
testis_male_adult_37_years	chr5	34685691	34685714	34685713	+	High_confidence	22	43	81	3.620367	5.802692	chr5	34685587	34685738	SINE|MIR|MIR3	+	chr5	34685699	34808620	RAI14|ENST00000508315.5	+	34685699,34686871,34757467,34795938,34803711,34807799,34808583	34685814,34686955,34757598,34796027,34803776,34807857,34808620	0.901235
testis_male_adult_37_years	chr1	189149602	189149641	189149602	+	High_confidence	28	30	155	6.927863	5.794434	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	189149561	189452638	STRG.16527.1	+	189149561,189150541,189307728,189452040	189149876,189150759,189307878,189452638	0.903226
testis_male_adult_37_years	chr12	79455514	79455537	79455536	-	High_confidence	9	10	21	0.938614	4.106603	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.809524
testis_male_adult_37_years	chr1	239730464	239730465	239730464	-	High_confidence	1040	1051	1446	64.630259	6.311947	chr1	239730338	239730702	LINE|L2|L2c	-	chr1	239707342	239730465	CHRM3-AS2|ENST00000628573.2	-	239707342,239714176,239720138,239727653,239730400	239707760,239714264,239720178,239727808,239730465	0.740664
testis_male_adult_37_years	chr6	7441682	7441683	7441682	-	High_confidence	7	7	7	0.312871	2.807355	chr6	7441101	7442714	LTR|ERV1|LTR12C	+	chr6	7440859	7441661	STRG.107590.1	-	7440859	7441661	0.714286
testis_male_adult_37_years	chr18	36807856	36807870	36807865	-	High_confidence	5	5	19	0.849222	4.058814	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.684211
testis_male_adult_37_years	chr12	10363939	10363965	10363964	+	High_confidence	22	22	39	1.743140	4.810673	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.615385
testis_male_adult_37_years	chr1	151994537	151994558	151994547	+	High_confidence	2	2	8	0.357567	3.000000	chr1	151994537	151994838	SINE|Alu|AluSx	+	chr1	151994530	152042774	AL450992.1|ENST00000432386.1	+	151994530,151998707,152010872,152014022,152015674,152016005,152016899,152018626,152020236,152021169,152021601,152022436,152041584	151994606,151998821,152010982,152014131,152015732,152016075,152018528,152018837,152020339,152021384,152021752,152022509,152042774	0.625000
testis_male_adult_37_years	chr5	134613081	134613120	134613096	-	High_confidence	109	109	476	21.275244	5.822267	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.934874
testis_male_adult_37_years	chr18	65605679	65605723	65605722	-	High_confidence	7	7	44	1.966619	4.653723	chr18	65605071	65606518	LTR|ERV1|LTR12C	+	chr18	65592301	65605512	STRG.263344.1	-	65592301,65596232,65605469	65592767,65596321,65605512	0.795455
testis_male_adult_37_years	chr7	66493241	66493260	66493241	-	High_confidence	3	3	8	0.357567	2.750000	chr7	66493191	66493285	SINE|Alu|AluJo	-	chr7	66423147	66493355	LINC00174|ENST00000638592.1	-	66423147,66427948,66439134,66450070,66479008,66480393,66481540,66485094,66487948,66489937,66491030,66493215	66423878,66428040,66439304,66450236,66479096,66480448,66481599,66485153,66488038,66490107,66491471,66493355	0.750000
testis_male_adult_37_years	chr1	23987795	23987806	23987805	-	High_confidence	16	28	44	1.966619	4.243300	chr1	23987325	23987827	DNA|hAT-Charlie|MER1A	-	chr1	23987087	23988098	STRG.2324.1	-	23987087,23987225	23987178,23988098	0.954545
testis_male_adult_37_years	chr14	77298971	77298972	77298971	-	RAMPAGE_only	7	7	8	0.357567	2.807355	chr14	77298887	77299121	SINE|MIR|MIRb	+	chr14	77274957	77301163	POMT2|ENST00000554767.5	-	77274957,77278393,77278728,77279822,77280020,77280391,77283796,77284949,77285480,77286743,77288761,77291313,77296163,77298688,77299454	77277481,77278508,77278869,77279928,77280080,77280463,77283873,77285041,77285632,77286822,77288831,77291380,77296273,77298771,77301163	0.875000
testis_male_adult_37_years	chr13	113605541	113605587	113605541	+	RAMPAGE_only	8	12	52	2.324186	5.078696	chr13	113605404	113605711	LTR|ERVL-MaLR|MLT1F	-	chr13	113585425	113633287	TFDP1|ENST00000453989.2	+	113585425,113585773,113610995,113623179,113631622,113633119	113585677,113585849,113611062,113623286,113631744,113633287	0.538462
testis_male_adult_37_years	chr19	12137696	12137706	12137696	-	High_confidence	27	27	94	4.201414	5.392436	chr19	12137329	12137812	LTR|ERVL|MER54A	+	chr19	12133690	12137702	ZNF20|ENST00000485451.1	-	12133690,12135499,12135768,12136850,12137657	12133985,12135560,12135895,12136876,12137702	0.797872
testis_male_adult_37_years	chr8	119943487	119943509	119943493	+	High_confidence	6	7	27	1.206789	4.532665	chr8	119943246	119943619	LTR|ERVL-MaLR|THE1D	-	chr8	119943506	120004371	STRG.154442.2	+	119943506,119965231,120001524,120002976	119943582,119965410,120001710,120004371	0.851852
testis_male_adult_37_years	chr4	124558444	124558448	124558444	-	High_confidence	7	8	13	0.581047	3.546594	chr4	124558181	124558732	LTR|ERV1|MER41A	+	chr4	124499941	124558434	LOC101927087|NR_110838.1	-	124499941,124504249,124520560,124522106,124534219,124540325,124543666,124556435,124558379	124500994,124504410,124520756,124522204,124534248,124540385,124543710,124556510,124558434	0.615385
testis_male_adult_37_years	chr14	21372586	21372609	21372608	-	RAMPAGE_only	9	9	41	1.832532	4.834184	chr14	21372467	21372721	LTR|ERVL-MaLR|MLT1J	+	chr14	21369348	21383946	SUPT16H|ENST00000556309.5	-	21369348,21369749,21370335,21371873,21373337,21383861	21369355,21369896,21370488,21371970,21373430,21383946	0.829268
testis_male_adult_37_years	chr12	4590066	4590101	4590100	+	High_confidence	18	32	140	6.257425	5.335828	chr12	4589956	4590135	SINE|MIR|MIR	-	chr12	4590100	4591818	DYRK4|ENST00000542905.1	+	4590100,4590329,4591159	4590201,4590554,4591818	0.835714
testis_male_adult_37_years	chr9	85804664	85804676	85804664	-	RAMPAGE_only	5	5	9	0.402263	3.169925	chr9	85804597	85804711	SINE|MIR|MIR	+	chr9	85786000	85805897	STRG.163892.2	-	85786000,85786437,85787883,85791486,85792180,85802700	85786175,85786551,85788038,85791536,85792252,85805897	1.000000
testis_male_adult_37_years	chr7	10085407	10085494	10085489	-	High_confidence	68	71	292	13.051200	6.546642	chr7	10085029	10085727	LTR|ERV1|MER50	-	chr7	10081029	10085489	STRG.125979.2	-	10081029	10085489	0.698630
testis_male_adult_37_years	chr7	88283855	88283857	88283856	-	RAMPAGE_only	4	7	9	0.402263	2.725481	chr7	88283844	88283877	LINE|RTE-BovB|MamRTE1	-	chr7	88281482	88306880	STEAP4|ENST00000414498.1	-	88281482,88283813,88290915,88306791	88283168,88284271,88291014,88306880	0.777778
testis_male_adult_37_years	chr8	85255824	85255865	85255854	-	High_confidence	12	12	52	2.324186	5.476347	chr8	85255758	85256028	LINE|L2|L2c	+	chr8	85222468	85255857	STRG.150096.1	-	85222468,85228966,85243344,85255768	85222853,85229110,85243688,85255857	0.634615
testis_male_adult_37_years	chr20	37382629	37382659	37382629	+	High_confidence	3	3	13	0.581047	2.623517	chr20	37382563	37382753	SINE|MIR|MIRb	-	chr20	37382603	37405432	SRC|ENST00000358208.8	+	37382603,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.923077
testis_male_adult_37_years	chr11	97667878	97667879	97667878	+	High_confidence	75	76	104	4.648373	5.756090	chr11	97666908	97668296	LTR|ERV1|LTR12C	+	chr11	97667529	97668364	STRG.192266.1	+	97667529	97668364	0.875000
testis_male_adult_37_years	chr17	46949076	46949099	46949076	+	RAMPAGE_only	6	6	26	1.162093	4.243856	chr17	46949015	46949582	LTR|ERVL-MaLR|MLT1G3	-	chr17	46931133	46952830	GOSR2|ENST00000639713.1	+	46931133,46932066,46935028,46938598,46952662	46931207,46932199,46935169,46938704,46952830	0.846154
testis_male_adult_37_years	chr17	28238661	28238667	28238661	-	High_confidence	46	46	119	5.318811	5.824221	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28230429	28238948	STRG.252511.1	-	28230429,28238574	28233342,28238948	0.806723
testis_male_adult_37_years	chr19	50815675	50815686	50815685	+	RAMPAGE_only	3	5	10	0.446959	2.947703	chr19	50815507	50815707	LTR|ERVL-MaLR|MLT1K	-	chr19	50817382	50818668	STRG.271362.3	+	50817382,50817907,50818134	50817530,50818037,50818668	0.700000
testis_male_adult_37_years	chr13	42138073	42138085	42138084	+	High_confidence	23	23	54	2.413578	4.483125	chr13	42138075	42138203	SINE|MIR|MIR3	-	chr13	42138084	42229753	DGKH|ENST00000536612.3	+	42138084,42155290,42155666,42159265,42160010,42165330,42166514,42168439,42168678,42174059,42178134,42187048,42189035,42190402,42194884,42198477,42199565,42199812,42206038,42208958,42209330,42210601,42214506,42215574,42219229,42219685,42221263,42225289,42229098	42138149,42155395,42155799,42159372,42160136,42165433,42166674,42168548,42168818,42174144,42178220,42187148,42189309,42190525,42195016,42198595,42199676,42199909,42206146,42209072,42209465,42210765,42214612,42215667,42219349,42219794,42221394,42225337,42229753	0.907407
testis_male_adult_37_years	chr8	55682462	55682513	55682512	+	High_confidence	36	36	128	5.721074	5.074523	chr8	55682499	55682992	LTR|ERVL|MLT2B1	-	chr8	55682524	55682993	STRG.146807.1	+	55682524	55682993	0.906250
testis_male_adult_37_years	chr9	2073107	2073162	2073107	+	High_confidence	2	2	15	0.670438	3.272906	chr9	2072786	2073156	LTR|ERVL-MaLR|MLT1N2	-	chr9	2073096	2081860	SMARCA2|ENST00000635129.1	+	2073096,2073565,2076228,2077628,2081831	2073342,2073623,2076329,2077776,2081860	1.000000
testis_male_adult_37_years	chr22	25058925	25058939	25058938	-	RAMPAGE_only	141	141	462	20.649502	4.862374	chr22	25058657	25058903	LTR|ERVL-MaLR|MLT1G	-	chr22	25052121	25065241	AL022323.4|ENST00000623980.1	-	25052121	25065241	0.976190
testis_male_adult_37_years	chr12	14530138	14530139	14530138	+	High_confidence	465	465	553	24.716828	6.519519	chr12	14529937	14530469	LTR|ERVL-MaLR|MLT1F1	+	chr12	14530150	14533229	AC008114.1|ENST00000544122.1	+	14530150,14531041,14533062	14530241,14531210,14533229	0.806510
testis_male_adult_37_years	chr7	154057595	154057596	154057595	-	RAMPAGE_only	7	7	7	0.312871	2.807355	chr7	154057429	154058031	LTR|ERV1|HERVE-int	+	chr7	154055584	154059561	AC006019.1|ENST00000425591.1	-	154055584,154057432	154055925,154059561	0.714286
testis_male_adult_37_years	chr3	11062264	11062265	11062264	+	High_confidence	47	49	51	2.279490	4.808388	chr3	11061208	11062580	LTR|ERV1|LTR12C	+	chr3	11062261	11063220	STRG.49075.1	+	11062261	11063220	0.745098
testis_male_adult_37_years	chr17	30115485	30115512	30115485	+	High_confidence	3	3	9	0.402263	3.000000	chr17	30115129	30115543	LINE|L1|L1MEc	+	chr17	30115520	30185847	NSRP1|ENST00000540900.7	+	30115520,30116645,30172541,30178070,30179089,30180907,30184614	30115623,30116863,30172598,30178199,30179297,30181016,30185847	0.888889
testis_male_adult_37_years	chr15	26244890	26244922	26244897	-	High_confidence	5	5	29	1.296181	4.280226	chr15	26244669	26245170	LTR|ERV1|LTR12F	-	chr15	26244294	26245080	STRG.232288.2	-	26244294	26245080	0.586207
testis_male_adult_37_years	chr6	76774932	76775007	76774949	+	High_confidence	48	49	176	7.866477	6.472771	chr6	76774716	76775166	LTR|ERVL|MER70A	+	chr6	76774982	76775860	AL590426.2|ENST00000607287.1	+	76774982,76775167	76775075,76775860	0.664773
testis_male_adult_37_years	chr2	70481614	70481629	70481628	-	High_confidence	25	28	63	2.815841	5.651698	chr2	70481545	70482042	LTR|ERVL-MaLR|MLT1F	+	chr2	70479570	70480778	STRG.31151.1	-	70479570,70480156	70480063,70480778	0.698413
testis_male_adult_37_years	chr7	154059531	154059568	154059531	-	High_confidence	8	8	20	0.893918	3.984184	chr7	154059367	154059965	LTR|ERV1|HERVE-int	+	chr7	154055584	154059561	AC006019.1|ENST00000425591.1	-	154055584,154057432	154055925,154059561	1.000000
testis_male_adult_37_years	chr17	45627386	45627399	45627386	+	RAMPAGE_only	6	7	16	0.715134	3.506891	chr17	45627353	45627650	SINE|Alu|AluSz	-	chr17	45621925	45816487	LINC02210-CRHR1|ENST00000587305.1	+	45621925,45629903,45672826,45807009,45816462	45622041,45630158,45672902,45807097,45816487	0.625000
testis_male_adult_37_years	chr9	68634979	68634992	68634991	-	High_confidence	7	7	13	0.581047	3.392747	chr9	68634706	68635090	LTR|ERVL-MaLR|MLT1J2	-	chr9	68626506	68634639	STRG.161640.1	-	68626506,68634460	68627032,68634639	0.923077
testis_male_adult_37_years	chr14	88830927	88831000	88830999	+	RAMPAGE_only	8	8	50	2.234795	4.276978	chr14	88831031	88831570	LTR|ERV1|MER66C	+	chr14	88824738	88853034	STRG.230309.9	+	88824738,88840864,88841036,88841424,88843805,88852970	88839572,88840928,88841196,88841514,88843850,88853034	0.980000
testis_male_adult_37_years	chr2	146837748	146837751	146837750	+	High_confidence	17	31	44	1.966619	4.702557	chr2	146836468	146837802	LTR|ERVL-MaLR|MLT1H-int	+	chr2	146837758	146838105	STRG.37627.1	+	146837758	146838105	0.522727
testis_male_adult_37_years	chr12	79913880	79913911	79913889	-	High_confidence	49	51	167	7.464214	4.994428	chr12	79913211	79913843	LINE|L1|L1M5	-	chr12	79773562	79913911	PPP1R12A|NM_001143886.1	-	79773562,79778549,79781814,79786373,79788647,79790466,79793862,79795637,79796781,79797194,79798493,79805591,79806165,79807225,79808482,79809794,79817393,79820773,79821077,79822115,79828319,79832331,79845301,79872807,79913796	79776015,79778600,79781862,79786478,79788783,79790483,79793928,79795759,79796950,79797395,79798584,79805768,79806333,79807330,79808577,79810010,79817518,79820931,79821166,79822190,79828464,79832491,79845420,79872938,79913911	0.934132
testis_male_adult_37_years	chr7	96664244	96664285	96664284	-	High_confidence	5	9	27	1.206789	4.440636	chr7	96664131	96664701	LTR|ERVL-MaLR|MLT1E2	-	chr7	96645389	96664285	SEM1|ENST00000622838.4	-	96645389,96653708,96656456,96664202	96645932,96653838,96656585,96664285	0.703704
testis_male_adult_37_years	chr6	8965284	8965331	8965330	+	RAMPAGE_only	2	2	12	0.536351	3.277613	chr6	8965323	8965479	SINE|Alu|AluJo	-	chr6	8887937	8993096	AL591485.1|ENST00000643761.1	+	8887937,8959855,8960706,8961458,8992164	8888526,8959950,8960815,8961564,8993096	0.583333
testis_male_adult_37_years	chr2	134941013	134941019	134941018	+	RAMPAGE_only	5	5	12	0.536351	3.251629	chr2	134940221	134941159	DNA|TcMar-Tigger|Tigger2	+	chr2	134918846	134946214	CCNT2|ENST00000417175.1	+	134918846,134919809,134936840,134939001,134942611,134945786,134946100	134919012,134919891,134936969,134939062,134942674,134945982,134946214	0.666667
testis_male_adult_37_years	chr16	63617833	63617852	63617851	-	High_confidence	2	3	8	0.357567	2.807355	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63129640	63618046	STRG.246413.1	-	63129640,63305346,63334599,63531224,63617692	63131268,63305420,63334667,63531304,63618046	0.625000
testis_male_adult_37_years	chr2	203206999	203207018	203207017	+	RAMPAGE_only	5	5	20	0.893918	3.221097	chr2	203206381	203207797	Retroposon|SVA|SVA_D	+	chr2	203208634	203226378	NBEAL1|ENST00000434469.1	+	203208634,203209160,203210957,203213517,203217252,203226122	203208753,203209322,203211106,203213653,203217350,203226378	0.650000
testis_male_adult_37_years	chr8	30872014	30872021	30872014	-	RAMPAGE_only	4	5	10	0.446959	2.641604	chr8	30871699	30872020	LTR|ERVL-MaLR|MLT1D-int	-	chr8	30831543	30888706	TEX15|ENST00000638951.1	-	30831543,30836802,30839905,30842003,30858667,30859910,30867264,30874936,30887166,30888635	30833323,30838061,30839964,30849316,30858830,30860057,30867502,30875102,30887311,30888706	0.700000
testis_male_adult_37_years	chr18	36857069	36857075	36857069	+	RAMPAGE_only	4	5	8	0.357567	2.521641	chr18	36855917	36857773	LINE|L1|L1ME1	-	chr18	36832673	37229885	KIAA1328|ENST00000591619.5	+	36832673,36834202,36835233,36844207,36885556,36959307,37066889,37160199,37172972,37222016,37229568	36833388,36834355,36835376,36844302,36885672,36959435,37067545,37160381,37173081,37225283,37229885	0.875000
testis_male_adult_37_years	chr9	73259250	73259297	73259292	+	High_confidence	24	43	107	4.782460	5.550073	chr9	73259106	73259490	LTR|ERVL-MaLR|MSTA	+	chr9	73259274	73364139	STRG.162050.1	+	73259274,73358807,73362699,73363557	73259357,73358907,73362888,73364139	0.616822
testis_male_adult_37_years	chr8	99893269	99893291	99893276	-	High_confidence	107	110	236	10.548230	5.611435	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.974576
testis_male_adult_37_years	chr20	53827223	53827288	53827275	-	RAMPAGE_only	12	12	40	1.787836	4.428996	chr20	53827048	53827453	LTR|ERVL-MaLR|MSTC	-	chr20	53801388	53812078	STRG.277163.1	-	53801388,53812014	53801585,53812078	0.525000
testis_male_adult_37_years	chrX	134794076	134794077	134794076	-	RAMPAGE_only	15	15	21	0.938614	4.142664	chrX	134794054	134794302	DNA|hAT-Charlie|Charlie17a	+	chrX	134769566	134796274	STRG.296733.7	-	134769566,134781820,134785885,134787471,134788729,134789084,134789222,134796107	134772283,134781917,134785950,134787533,134788831,134789139,134793893,134796274	0.904762
testis_male_adult_37_years	chr3	1202444	1202456	1202455	-	High_confidence	10	10	21	0.938614	3.784942	chr3	1202258	1202543	SINE|Alu|AluY	+	chr3	1201873	1202532	STRG.47477.1	-	1201873	1202532	0.904762
testis_male_adult_37_years	chr13	87854588	87854621	87854620	+	High_confidence	9	10	44	1.966619	3.992328	chr13	87854480	87854783	SINE|Alu|AluSx1	-	chr13	87854051	87855193	STRG.218996.1	+	87854051	87855193	0.909091
testis_male_adult_37_years	chr9	19021922	19021923	19021922	+	High_confidence	6	6	7	0.312871	2.584963	chr9	19021673	19022403	LTR|ERV1|LTR12_	+	chr9	19021931	19022355	STRG.158481.1	+	19021931	19022355	0.571429
testis_male_adult_37_years	chr5	95852183	95852232	95852231	+	High_confidence	17	17	33	1.474964	3.247903	chr5	95850982	95852649	LTR|ERV1|LTR12C	+	chr5	95852231	95860133	LINC01554|NR_026936.1	+	95852231,95856877,95858803	95852714,95856981,95860133	0.939394
testis_male_adult_37_years	chr10	103517405	103517440	103517424	-	High_confidence	31	31	79	3.530975	5.655225	chr10	103517381	103517478	SINE|MIR|MIRb	-	chr10	103511778	103517442	NEURL1-AS1|NR_120676.1	-	103511778,103515340,103517385	103512155,103515402,103517442	0.556962
testis_male_adult_37_years	chr11	322621	322670	322635	-	High_confidence	39	40	328	14.660252	6.115743	chr11	322580	322928	LTR|ERV1|LTR76	-	chr11	319772	322719	STRG.182268.4	-	319772,320564,322595	319990,320772,322719	0.591463
testis_male_adult_37_years	chr11	82404352	82404366	82404352	-	High_confidence	9	9	20	0.893918	3.721928	chr11	82403718	82405096	LTR|ERV1|LTR12C	+	chr11	82354068	82404507	STRG.190220.3	-	82354068,82403678	82356628,82404507	0.550000
testis_male_adult_37_years	chr5	29395973	29396010	29395988	-	High_confidence	23	34	129	5.765770	6.216557	chr5	29394634	29396044	LTR|ERV1|HERVFH21-int	+	chr5	29380295	29395981	LINC02064|ENST00000506492.5	-	29380295,29381852,29384319,29389810,29395853	29380325,29381962,29384392,29389939,29395981	0.565891
testis_male_adult_37_years	chr10	93496804	93496891	93496875	+	High_confidence	4	5	32	1.430269	4.538910	chr10	93496847	93496980	SINE|MIR|MIRb	-	chr10	93496631	93529092	CEP55|ENST00000371485.7	+	93496631,93500039,93503112,93506987,93515404,93516934,93518876,93519681,93527949	93496923,93500234,93503388,93507056,93515555,93517248,93518948,93519807,93529092	1.000000
testis_male_adult_37_years	chr10	72355126	72355146	72355145	-	High_confidence	5	5	17	0.759830	3.375000	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.882353
testis_male_adult_37_years	chr16	22260260	22260264	22260260	+	RAMPAGE_only	2	2	7	0.312871	2.807355	chr16	22260207	22260274	SINE|MIR|MIR	-	chr16	22257643	22263322	EEF2K|ENST00000563555.1	+	22257643,22258493,22260461,22263109	22257770,22258695,22260529,22263322	0.857143
testis_male_adult_37_years	chr8	75665829	75665837	75665836	+	RAMPAGE_only	16	19	64	2.860537	4.756796	chr8	75664381	75666029	LTR|ERV1|LTR12C	-	chr8	75664547	75812126	STRG.148902.2	+	75664547,75665344,75775445,75811852	75664576,75666113,75775582,75812126	0.640625
testis_male_adult_37_years	chr9	85289507	85289542	85289541	-	RAMPAGE_only	6	6	23	1.028006	4.001823	chr9	85288865	85289981	LTR|ERV1|LTR12C	+	chr9	85283203	85284749	STRG.163783.1	-	85283203	85284749	0.695652
testis_male_adult_37_years	chr6	144533102	144533106	144533105	+	RAMPAGE_only	7	7	15	0.670438	3.664498	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.866667
testis_male_adult_37_years	chrX	53614538	53614561	53614553	-	RAMPAGE_only	3	3	10	0.446959	2.947703	chrX	53614388	53614509	SINE|MIR|MIR3	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.900000
testis_male_adult_37_years	chr6	2881285	2881286	2881285	-	High_confidence	9	9	9	0.402263	3.169925	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
testis_male_adult_37_years	chr2	184204371	184204404	184204403	+	RAMPAGE_only	8	8	36	1.609052	4.836592	chr2	184204273	184204571	SINE|Alu|AluY	-	chr2	184226085	184226835	STRG.41383.1	+	184226085	184226835	0.722222
testis_male_adult_37_years	chr3	46558476	46558526	46558503	-	High_confidence	6	6	30	1.340877	4.211261	chr3	46558357	46558849	LINE|L1|L1MEf	-	chr3	46539020	46558433	STRG.53221.1	-	46539020,46545045,46551466,46558383	46539201,46545253,46551610,46558433	0.733333
testis_male_adult_37_years	chr13	77997843	77997864	77997863	-	High_confidence	12	13	38	1.698444	4.774243	chr13	77997705	77998024	LTR|ERVL-MaLR|MLT1I	+	chr13	77981750	77997840	STRG.217448.1	-	77981750,77989371,77997815	77981984,77989608,77997840	0.868421
testis_male_adult_37_years	chr14	23636366	23636367	23636366	+	High_confidence	7	7	11	0.491655	3.121928	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	0.818182
testis_male_adult_37_years	chr18	23576944	23576948	23576947	-	High_confidence	68	71	123	5.497595	4.960745	chr18	23576532	23578195	LTR|ERV1|LTR12C	-	chr18	23573451	23576947	NPC1|ENST00000587223.1	-	23573451,23576480	23573574,23576947	0.991870
testis_male_adult_37_years	chr16	35516862	35516924	35516862	+	RAMPAGE_only	16	18	72	3.218104	5.676734	chr16	35516603	35517040	LTR|ERVK|LTR3B_	+	chr16	35506278	35524559	STRG.244662.2	+	35506278,35517014,35522118,35524063	35508765,35517144,35523999,35524559	0.888889
testis_male_adult_37_years	chr10	98215828	98215849	98215828	+	RAMPAGE_only	6	9	21	0.938614	3.784184	chr10	98215262	98215844	DNA|TcMar-Tc2|Kanga1b	-	chr10	98199589	98244894	STRG.178511.7	+	98199589,98208100,98231511,98234445,98235424,98236023,98244090	98205656,98209899,98231687,98234516,98235520,98236164,98244894	0.619048
testis_male_adult_37_years	chr9	115744249	115744345	115744249	-	High_confidence	22	22	242	10.816406	6.797973	chr9	115743858	115744555	LTR|ERV1|MER50B	-	chr9	115739339	115744256	AL691420.1|ENST00000644298.1	-	115739339,115741461,115742952,115744156	115739874,115741562,115743070,115744256	0.595041
testis_male_adult_37_years	chr4	123539025	123539027	123539025	+	RAMPAGE_only	102	182	199	8.894482	5.258151	chr4	123537735	123539444	LTR|ERV1|LTR12C	+	chr4	123536837	123829348	STRG.81175.1	+	123536837,123652786,123661752,123829094	123539661,123652902,123661833,123829348	0.964824
testis_male_adult_37_years	chr7	26637891	26637914	26637913	+	High_confidence	3	3	8	0.357567	2.521641	chr7	26637782	26637931	SINE|MIR|MIRc	-	chr7	26637876	26640050	STRG.128559.1	+	26637876,26638050	26637936,26640050	0.750000
testis_male_adult_37_years	chr10	120923806	120923837	120923836	-	High_confidence	6	6	21	0.938614	4.106603	chr10	120923641	120924967	LTR|ERV1|LTR12C	+	chr10	120923442	120923813	STRG.180967.1	-	120923442	120923813	0.714286
testis_male_adult_37_years	chr6	130894343	130894364	130894344	-	RAMPAGE_only	9	11	21	0.938614	4.142664	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	0.761905
testis_male_adult_37_years	chr17	31858469	31858490	31858469	-	High_confidence	1	1	7	0.312871	2.584963	chr17	31858397	31858542	LINE|L2|L2a	-	chr17	31852230	31858931	COPRS|ENST00000579741.1	-	31852230,31852811,31856798,31858824	31852308,31853030,31856865,31858931	0.571429
testis_male_adult_37_years	chr10	43628807	43628817	43628807	+	RAMPAGE_only	22	39	62	2.771145	5.458150	chr10	43628446	43629216	LTR|ERVL|LTR101_Mam	+	chr10	43645941	43648019	ZNF32-AS2|ENST00000418966.1	+	43645941,43647111,43647568	43646297,43647209,43648019	0.532258
testis_male_adult_37_years	chr3	38951603	38951615	38951614	-	RAMPAGE_only	8	8	14	0.625742	3.238901	chr3	38950968	38952226	LTR|ERV1|LTR12C	+	chr3	38845768	38950561	SCN11A|ENST00000302328.7	-	38845768,38850480,38863194,38867320,38870690,38871444,38872192,38879949,38883232,38885287,38886124,38894532,38896844,38899893,38903864,38905191,38907948,38908996,38910065,38919934,38921075,38925414,38926802,38945410,38946788,38950095	38847742,38850751,38863299,38867458,38870744,38871708,38872294,38880123,38883387,38885402,38886238,38894964,38897225,38900073,38904103,38905321,38908122,38909194,38910207,38920001,38921255,38925509,38926931,38945512,38946907,38950561	0.785714
testis_male_adult_37_years	chr5	20819607	20819621	20819607	-	High_confidence	16	17	30	1.340877	4.523231	chr5	20819309	20819762	LTR|ERVL|MER70A	-	chr5	20819151	20819620	STRG.90886.1	-	20819151	20819620	0.666667
testis_male_adult_37_years	chr6	26956949	26957058	26956949	+	High_confidence	18	19	157	7.017255	6.345718	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26956992	27023924	LINC00240|ENST00000606878.1	+	26956992,26968457,27023253	26957183,26968522,27023924	0.617834
testis_male_adult_37_years	chr7	35106924	35106939	35106938	-	High_confidence	11	11	29	1.296181	4.384517	chr7	35106672	35107386	DNA|TcMar-Tigger|MER44C	+	chr7	35089843	35107734	DPY19L2P1|ENST00000436258.1	-	35089843,35104643,35106043	35091946,35104763,35107734	0.896552
testis_male_adult_37_years	chr1	78620056	78620057	78620056	+	High_confidence	7	11	11	0.491655	3.277613	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78641968	IFI44L|ENST00000476521.5	+	78620381,78628950,78629719,78635336,78637099,78641020,78641434,78641774	78620571,78628999,78629915,78635489,78637203,78641121,78641609,78641968	0.818182
testis_male_adult_37_years	chr10	68720556	68720568	68720556	+	High_confidence	3	5	9	0.402263	2.500000	chr10	68720579	68720874	LINE|L1|L1PA5	+	chr10	68721011	68742408	CCAR1|ENST00000536391.5	+	68721011,68722454,68736875,68737844,68740628,68742375	68721156,68722577,68737048,68737889,68740661,68742408	0.666667
testis_male_adult_37_years	chr19	1808229	1808231	1808230	-	RAMPAGE_only	3	5	8	0.357567	2.500000	chr19	1808176	1808300	LINE|L2|L2b	-	chr19	1798763	1806160	ATP8B3|ENST00000533107.3	-	1798763,1800258,1801955,1802486,1805373,1805887	1800155,1800449,1802044,1802645,1805456,1806160	1.000000
testis_male_adult_37_years	chr1	183449444	183449482	183449481	+	RAMPAGE_only	12	12	42	1.877227	4.716972	chr1	183449284	183449643	LTR|ERVL-MaLR|THE1B	+	chr1	183433767	183469003	STRG.16036.1	+	183433767,183457450,183462042	183434054,183457530,183469003	0.857143
testis_male_adult_37_years	chr6	163671625	163671658	163671634	+	High_confidence	66	67	308	13.766335	7.199518	chr6	163671518	163671708	LTR|ERVL-MaLR|MLT1I	+	chr6	163671590	163770335	STRG.123943.1	+	163671590,163703905,163759224	163671696,163704005,163770335	0.626623
testis_male_adult_37_years	chr16	20674404	20674458	20674404	+	High_confidence	14	22	92	4.112022	5.107466	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.750000
testis_male_adult_37_years	chr2	65725488	65725499	65725493	+	High_confidence	14	14	40	1.787836	4.681881	chr2	65725219	65726122	LTR|ERVL|MER21C	+	chr2	65725476	65730776	STRG.30499.1	+	65725476,65726579,65730498	65725765,65726622,65730776	0.700000
testis_male_adult_37_years	chr2	27662260	27662261	27662260	-	RAMPAGE_only	6	6	8	0.357567	2.521641	chr2	27662206	27662384	LINE|L2|L2c	-	chr2	27653069	27663639	SUPT7L|ENST00000464789.2	-	27653069,27655364,27657344,27660983,27663514	27653747,27655602,27657669,27662281,27663639	0.875000
testis_male_adult_37_years	chr4	86453308	86453342	86453341	-	High_confidence	6	6	18	0.804526	3.381580	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453325	MAPK10|ENST00000641313.1	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86354644,86453325	0.888889
testis_male_adult_37_years	chr2	129144560	129144590	129144560	+	High_confidence	11	13	53	2.368882	4.585979	chr2	129143821	129144796	LTR|ERV1|LTR12D	-	chr2	129144331	129145714	STRG.35923.1	+	129144331	129145714	0.603774
testis_male_adult_37_years	chr1	223116605	223116606	223116605	-	High_confidence	272	275	333	14.883732	5.864101	chr1	223116165	223117491	LTR|ERV1|LTR12C	-	chr1	223115320	223116632	STRG.19754.1	-	223115320	223116632	0.957958
testis_male_adult_37_years	chr15	23881460	23881461	23881460	-	High_confidence	53	53	53	2.368882	4.751044	chr15	23881091	23881694	LTR|ERV1|LTR12_	-	chr15	23880862	23881445	STRG.232760.1	-	23880862	23881445	0.716981
testis_male_adult_37_years	chr9	111784061	111784062	111784061	-	High_confidence	7	8	11	0.491655	3.321928	chr9	111783697	111784151	LTR|ERVL|MER70A	-	chr9	111686572	111783948	STRG.166805.2	-	111686572,111691550,111693798,111694230,111699953,111702104,111703880,111705246,111706567,111707854,111713099,111714444,111718183,111722408,111723791,111727632,111738279,111741475,111746233,111748091,111756324,111758083,111758694,111775790,111780929,111783798	111686870,111692511,111693948,111694362,111700047,111702226,111703992,111705364,111706746,111707924,111713172,111714623,111718288,111722585,111723911,111728049,111738522,111741570,111746342,111748199,111756478,111758195,111758848,111775975,111781017,111783948	0.909091
testis_male_adult_37_years	chr3	139190151	139190197	139190196	+	RAMPAGE_only	4	4	20	0.893918	4.021928	chr3	139190102	139190234	LTR|ERVL-MaLR|MLT1K	-	chr3	139344018	139357046	MRPS22|NM_020191.2	+	139344018,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344198,139347044,139348324,139350322,139351060,139352792,139355790,139357046	0.700000
testis_male_adult_37_years	chrX	55461695	55461710	55461709	-	RAMPAGE_only	8	8	20	0.893918	3.281373	chrX	55461383	55461689	DNA|hAT-Charlie|MER5C	-	chrX	55331259	55332924	STRG.291863.1	-	55331259	55332924	0.550000
testis_male_adult_37_years	chr20	44746227	44746254	44746253	-	High_confidence	6	7	29	1.296181	4.282484	chr20	44746252	44746334	SINE|MIR|MIR3	+	chr20	44711861	44746227	KCNK15-AS1|NR_132377.1	-	44711861,44716624,44737510,44738819,44745964	44711988,44716793,44737570,44738934,44746227	0.724138
testis_male_adult_37_years	chr11	40099517	40099584	40099517	-	High_confidence	4	4	24	1.072701	4.142915	chr11	40099467	40099818	LTR|ERV1|MER61A	+	chr11	40098968	40099886	STRG.186564.1	-	40098968	40099886	0.750000
testis_male_adult_37_years	chr15	97875619	97875650	97875619	-	High_confidence	28	34	110	4.916548	5.653192	chr15	97875560	97876737	LTR|ERV1|LTR12D	+	chr15	97700645	97876105	STRG.240814.5	-	97700645,97705460,97743329,97758489,97873952	97704108,97705527,97743483,97758661,97876105	0.972727
testis_male_adult_37_years	chr21	24375680	24375692	24375687	+	High_confidence	5	5	17	0.759830	3.577820	chr21	24373448	24375827	LINE|L1|L1PBa	-	chr21	24375587	24376035	STRG.279771.1	+	24375587	24376035	0.588235
testis_male_adult_37_years	chr1	23015838	23015852	23015851	-	High_confidence	10	12	22	0.983310	3.970573	chr1	23015482	23016007	LINE|L1|L1MB2	+	chr1	23010833	23015850	C1orf234|NM_001242521.1	-	23010833,23013882,23015771	23011101,23014045,23015850	0.772727
testis_male_adult_37_years	chr12	108473714	108473731	108473714	-	RAMPAGE_only	6	6	12	0.536351	3.277613	chr12	108473574	108473912	LTR|ERVL-MaLR|MLT1I	-	chr12	108434129	108492585	LINC01498|ENST00000502160.6	-	108434129,108438799,108442548,108443274,108447441,108448385,108448757,108453750,108457795,108459180,108459444,108461629,108464261,108472008,108473001,108479538,108486172,108492449	108434293,108438899,108442699,108443317,108447520,108448496,108448886,108453831,108457932,108459303,108459584,108461694,108464446,108472103,108473186,108480528,108486242,108492585	0.666667
testis_male_adult_37_years	chr6	13044592	13044602	13044592	+	RAMPAGE_only	4	4	9	0.402263	2.750000	chr6	13044369	13044648	LTR|ERVL-MaLR|MLT1K	-	chr6	13013655	13287843	PHACTR1|NM_001322314.1	+	13013655,13053364,13160203,13182518,13184798,13205814,13227815,13230036,13272859,13278267,13283421,13286145,13287062	13014139,13053529,13160284,13182686,13185005,13206136,13228063,13230193,13272915,13278329,13283562,13286222,13287843	0.555556
testis_male_adult_37_years	chr10	72355224	72355243	72355224	-	High_confidence	6	6	10	0.446959	3.321928	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332830	72355230	DNAJB12|ENST00000444643.6	-	72332830,72335779,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72334617,72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355230	1.000000
testis_male_adult_37_years	chr12	53388898	53388913	53388898	+	RAMPAGE_only	3	3	10	0.446959	3.169925	chr12	53388697	53388988	SINE|Alu|AluJb	+	chr12	53380643	53416446	SP1|NM_003109.1	+	53380643,53381658,53382109,53406584,53409361,53410926	53380684,53381813,53383622,53406753,53409561,53416446	0.900000
testis_male_adult_37_years	chr3	97924278	97924279	97924278	+	High_confidence	8	8	11	0.491655	3.321928	chr3	97923811	97924415	LINE|L1|L1ME3C	+	chr3	97924211	97944957	CRYBG3|ENST00000485253.1	+	97924211,97933693,97936784,97941147,97942283,97943225,97944833	97924411,97933833,97936908,97941306,97942443,97943570,97944957	0.909091
testis_male_adult_37_years	chrX	135893573	135893706	135893604	+	High_confidence	10	10	79	3.530975	5.548558	chrX	135893573	135893804	LTR|ERVL|LTR41	-	chrX	135893633	135913061	SAGE1|NM_018666.2	+	135893633,135896242,135901558,135904476,135905251,135906023,135906410,135906925,135907312,135907700,135908088,135908476,135908863,135909638,135910029,135910414,135911191,135911578,135912320,135912797	135893800,135896329,135901691,135904569,135905392,135906164,135906551,135907066,135907453,135907841,135908229,135908617,135909004,135909779,135910170,135910555,135911332,135911953,135912414,135913061	0.848101
testis_male_adult_37_years	chr1	188013205	188013231	188013205	+	High_confidence	2	2	9	0.402263	3.000000	chr1	188012480	188013856	LTR|ERV1|LTR12C	-	chr1	188013641	188144763	AL136372.2|ENST00000648838.1	+	188013641,188042891,188097138,188143896	188013999,188042987,188097218,188144763	0.555556
testis_male_adult_37_years	chr8	15417190	15417244	15417190	+	RAMPAGE_only	3	3	12	0.536351	3.084963	chr8	15417004	15417387	LTR|ERVL-MaLR|MSTA	+	chr8	15540086	15766649	TUSC3|NM_178234.2	+	15540086,15623079,15650696,15659506,15662155,15673746,15730665,15743537,15748374,15764202	15540568,15623249,15650814,15659647,15662296,15673836,15730729,15743612,15748465,15766649	0.916667
testis_male_adult_37_years	chr7	66401295	66401335	66401301	-	High_confidence	8	9	44	1.966619	4.957445	chr7	66401247	66401428	LTR|ERVL|ERVL-E-int	-	chr7	66376043	66401338	LINC00174|ENST00000421767.1	-	66376043,66382236,66395878,66399691,66400321,66400922,66401194	66380003,66382431,66395956,66399795,66400437,66401027,66401338	0.522727
testis_male_adult_37_years	chr17	22342861	22342884	22342878	+	RAMPAGE_only	7	7	22	0.983310	3.754442	chr17	22342695	22343215	LTR|ERVL|MER77	+	chr17	22355810	22356117	STRG.252091.1	+	22355810	22356117	0.863636
testis_male_adult_37_years	chr3	129429673	129429680	129429679	+	High_confidence	18	21	42	1.877227	5.080274	chr3	129429547	129429738	SINE|MIR|MIR	-	chr3	129429622	129433348	STRG.61249.1	+	129429622,129432462,129433089	129429818,129432635,129433348	0.523810
testis_male_adult_37_years	chr1	41243855	41243856	41243855	-	RAMPAGE_only	8	8	12	0.536351	3.277613	chr1	41243611	41244191	LTR|ERVL-MaLR|MLT1E3	-	chr1	41185983	41242154	SCMH1|ENST00000488592.1	-	41185983,41242058	41186250,41242154	0.500000
testis_male_adult_37_years	chr11	4116254	4116284	4116263	+	High_confidence	45	45	123	5.497595	5.911058	chr11	4115961	4116307	LTR|ERV1|HERV-Fc1_LTR1	-	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.878049
testis_male_adult_37_years	chr2	131613038	131613058	131613038	+	RAMPAGE_only	3	3	8	0.357567	2.807355	chr2	131612951	131613109	SINE|Alu|AluJb	-	chr2	131543521	131647422	STRG.36693.1	+	131543521,131545045,131553012,131555071,131557350,131564860,131577507,131580151,131582017,131591801,131596773,131597047,131600004,131601422,131604017,131609381,131611132,131612985,131625937,131629853,131637054,131638576	131543823,131545201,131553166,131555184,131557463,131575207,131577614,131580264,131582129,131592104,131596888,131597221,131600111,131601556,131604088,131609452,131611709,131613103,131629643,131633629,131637666,131647422	0.625000
testis_male_adult_37_years	chr1	185321232	185321233	185321232	-	High_confidence	36	36	37	1.653748	4.392147	chr1	185320917	185322247	LTR|ERV1|LTR12C	-	chr1	185320779	185321214	STRG.16169.1	-	185320779	185321214	0.918919
testis_male_adult_37_years	chr4	131379753	131379774	131379759	+	High_confidence	212	212	841	37.589245	6.569750	chr4	131379190	131380342	LTR|ERV1|LTR12D	+	chr4	131379730	131527966	STRG.82079.3	+	131379730,131427499,131527229	131380341,131427617,131527966	0.966706
testis_male_adult_37_years	chr6	152835344	152835345	152835344	+	High_confidence	52	52	58	2.592362	4.860577	chr6	152834159	152835658	LTR|ERV1|LTR12C	+	chr6	152835351	152835655	STRG.123124.1	+	152835351	152835655	0.724138
testis_male_adult_37_years	chr3	9216663	9216702	9216680	+	High_confidence	39	39	162	7.240734	5.925209	chr3	9216588	9216732	SINE|MIR|MIRc	-	chr3	9216668	9217157	STRG.49129.1	+	9216668	9217157	0.938272
testis_male_adult_37_years	chr14	81170392	81170431	81170412	-	High_confidence	13	17	62	2.771145	5.016471	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.983871
testis_male_adult_37_years	chr3	99935693	99935707	99935706	-	RAMPAGE_only	8	8	14	0.625742	3.664498	chr3	99935648	99935715	LINE|CR1|L3	+	chr3	99833143	100114513	FILIP1L|NM_182909.3	-	99833143,99848294,99924229,99929855,99930768,100114052	99833261,99851070,99924408,99930029,99931030,100114513	1.000000
testis_male_adult_37_years	chr7	38392709	38392733	38392719	-	High_confidence	25	27	55	2.458274	4.853732	chr7	38392377	38392684	SINE|Alu|AluY	-	chr7	38389847	38392719	AMPH|ENST00000460887.1	-	38389847,38391747,38392617	38389905,38392017,38392719	0.854545
testis_male_adult_37_years	chr14	75632624	75632645	75632624	+	High_confidence	6	6	12	0.536351	3.277613	chr14	75632226	75632769	LTR|ERVL?|LTR87	-	chr14	75632626	75639462	FLVCR2|ENST00000556409.1	+	75632626,75633628,75634909,75639351	75632952,75633696,75635013,75639462	0.750000
testis_male_adult_37_years	chr14	63852627	63852643	63852627	+	High_confidence	5	5	13	0.581047	3.546594	chr14	63852541	63852636	SINE|MIR|MIR3	-	chr14	63852964	64226449	SYNE2|NM_182914.2	+	63852964,63909097,63940613,63941694,63941884,63942050,63949824,63954718,63961524,63963898,63967708,63976562,63977904,63978851,63980653,63980985,63982629,63983736,63986455,63990410,63990941,63993834,63995043,63996946,63997300,63998218,63998913,64000561,64001933,64002719,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024256,64024911,64025129,64026578,64027483,64029894,64031015,64047999,64049610,64051556,64055943,64062750,64065431,64070644,64073967,64075944,64078465,64080455,64081442,64087670,64089573,64090865,64093348,64097948,64098746,64101931,64107490,64113340,64119426,64120926,64122011,64122285,64125078,64126326,64126597,64128451,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64165284,64167232,64167494,64168876,64170227,64174943,64177357,64186423,64188549,64190070,64202800,64208757,64209427,64209941,64211960,64212810,64214193,64215285,64216247,64218397,64219207,64220436,64221575,64223188,64224460,64224998,64225318	63853143,63909227,63940675,63941790,63941962,63942143,63950006,63954915,63961625,63964000,63967846,63976727,63978017,63979014,63980732,63981173,63982794,63983886,63986617,63990569,63991115,63993969,63995202,63997158,63997391,63998328,63999040,64000719,64002081,64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64022863,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64048155,64049876,64053657,64056266,64062895,64065650,64070910,64074136,64076100,64078606,64080638,64081580,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64122427,64125210,64126479,64126807,64128553,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64165410,64167387,64167639,64168971,64170462,64175138,64177483,64186579,64188708,64190237,64202963,64208945,64209578,64210124,64212098,64213005,64214470,64215354,64216387,64218512,64219410,64220637,64221704,64223380,64224547,64225045,64226449	0.923077
testis_male_adult_37_years	chr1	153967482	153967504	153967486	+	High_confidence	17	20	49	2.190099	4.555533	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.775510
testis_male_adult_37_years	chr15	48767970	48767997	48767996	-	RAMPAGE_only	5	7	15	0.670438	3.664498	chr15	48767825	48768118	DNA|TcMar-Tigger|Tigger16b	-	chr15	48738150	48810987	CEP152|ENST00000399334.7	-	48738150,48741600,48741946,48744239,48744895,48752348,48755902,48760134,48762390,48767059,48767334,48768218,48768955,48772486,48781195,48782138,48783972,48788800,48791236,48793320,48796009,48797300,48797660,48797947,48805562,48810960	48739288,48741704,48742100,48744343,48744992,48752469,48756553,48760266,48762672,48767192,48767463,48768328,48769081,48772691,48781359,48782230,48784120,48789001,48791376,48793461,48796160,48797579,48797730,48798051,48805656,48810987	0.800000
testis_male_adult_37_years	chr20	5445720	5445740	5445720	-	High_confidence	102	108	247	11.039885	6.443034	chr20	5445444	5445928	LTR|ERVL-MaLR|MLT1F	-	chr20	5434284	5445740	LINC00658|ENST00000609252.1	-	5434284,5437099,5438209,5445503	5434405,5437273,5438315,5445740	0.769231
testis_male_adult_37_years	chr19	42739472	42739487	42739477	-	High_confidence	6	6	19	0.849222	3.531631	chr19	42739304	42739617	LINE|L2|L2a	+	chr19	42733588	42739476	PSG3|ENST00000490592.1	-	42733588,42734046,42738723,42739320	42733726,42734195,42739089,42739476	0.789474
testis_male_adult_37_years	chr2	200889019	200889154	200889153	-	High_confidence	29	32	257	11.486844	6.572758	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889154	PPIL3|ENST00000392283.8	-	200870955,200876918,200881420,200882341,200885697,200887612,200888955	200871521,200877037,200881488,200882435,200885772,200887685,200889154	0.891051
testis_male_adult_37_years	chr4	189806620	189806653	189806652	-	High_confidence	7	7	21	0.938614	3.880180	chr4	189806325	189807443	LTR|ERV1|LTR12D	-	chr4	189805709	189806948	STRG.88096.1	-	189805709	189806948	0.952381
testis_male_adult_37_years	chr16	64342660	64342685	64342684	+	High_confidence	4	4	8	0.357567	2.807355	chr16	64342634	64343021	LINE|L1|L1MA4	+	chr16	64342649	64602091	STRG.246434.1	+	64342649,64343505,64364778,64475688,64479074,64600138	64342732,64344392,64364896,64475815,64479185,64602091	0.500000
testis_male_adult_37_years	chr8	27907671	27907672	27907671	-	High_confidence	5	5	7	0.312871	2.521641	chr8	27907572	27907869	SINE|Alu|AluSz	-	chr8	27870235	27907915	STRG.144627.5	-	27870235,27879568,27904777,27907147,27907439	27872070,27879766,27904834,27907246,27907915	1.000000
testis_male_adult_37_years	chr6	122482061	122482062	122482061	+	RAMPAGE_only	7	10	11	0.491655	3.121928	chr6	122481961	122482259	SINE|Alu|AluYe5	-	chr6	122471916	122726373	PKIB|NM_001270393.1	+	122471916,122477850,122482146,122585920,122633282,122675077,122717786,122725127	122472041,122477939,122482266,122586007,122633367,122675144,122717963,122726373	0.545455
testis_male_adult_37_years	chr7	26244907	26244912	26244911	-	RAMPAGE_only	6	6	13	0.581047	3.418296	chr7	26244061	26247652	LTR|ERV1|HERVH48-int	+	chr7	26226412	26254709	AC010677.2|ENST00000650328.1	-	26226412,26254257	26226657,26254709	0.615385
testis_male_adult_37_years	chr4	141333575	141333590	141333575	+	High_confidence	4	5	18	0.804526	3.616875	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141332659	141334201	STRG.83183.1	+	141332659	141334201	0.500000
testis_male_adult_37_years	chr8	63465814	63465833	63465814	+	High_confidence	3	3	7	0.312871	2.807355	chr8	63465770	63465957	SINE|Alu|AluSg7	+	chr8	63465848	63475482	LOC102724612|NR_125825.1	+	63465848,63467141,63472369,63475347	63465997,63469946,63472502,63475482	0.857143
testis_male_adult_37_years	chr4	168536617	168536618	168536617	-	RAMPAGE_only	10	10	10	0.446959	3.321928	chr4	168536432	168536812	LTR|ERVL-MaLR|THE1D	-	chr4	168476066	168537786	DDX60L|ENST00000505150.5	-	168476066,168490357,168492665,168530560,168537640	168476120,168490450,168492885,168530702,168537786	0.500000
testis_male_adult_37_years	chr1	173637712	173637713	173637712	+	High_confidence	1211	1214	1422	63.557558	7.952611	chr1	173637250	173637824	LTR|ERV1|LTR10C	+	chr1	173637718	173705806	STRG.15175.3	+	173637718,173702912	173671334,173705806	0.911392
testis_male_adult_37_years	chr18	13004803	13004828	13004803	+	RAMPAGE_only	3	3	11	0.491655	2.846439	chr18	13003878	13005061	LINE|L2|L2a	-	chr18	13008499	13125052	CEP192|ENST00000513432.5	+	13008499,13012972,13015327,13017187,13018479,13019081,13029662,13030464,13040829,13042203,13048858,13049764,13052918,13055779,13057584,13067830,13068093,13068358,13068851,13069088,13069737,13071038,13072754,13073008,13087016,13087530,13089455,13092376,13095502,13096183,13099475,13100304,13103508,13104983,13113585,13114129,13116376,13117584,13124631	13008631,13013025,13015448,13017336,13018615,13019206,13030002,13030608,13040956,13042334,13049681,13049891,13053090,13056698,13059312,13067956,13068237,13068422,13068991,13069181,13069856,13071212,13072845,13073185,13087277,13087646,13089565,13092527,13095681,13096307,13099581,13100512,13103588,13105079,13113705,13114251,13116503,13117643,13125052	0.636364
testis_male_adult_37_years	chrX	107156211	107156212	107156211	-	RAMPAGE_only	5	5	8	0.357567	2.521641	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.625000
testis_male_adult_37_years	chr22	18156353	18156354	18156353	+	High_confidence	168	170	171	7.642997	4.938690	chr22	18155341	18156872	LTR|ERV1|LTR12C	+	chr22	18156323	18162162	STRG.283455.2	+	18156323,18157557,18160171,18161789	18156889,18157820,18160268,18162162	0.994152
testis_male_adult_37_years	chr15	24919369	24919396	24919369	+	RAMPAGE_only	4	4	15	0.670438	3.323231	chr15	24919148	24919446	SINE|Alu|AluY	+	chr15	24954892	24978723	SNURF|NM_005678.4	+	24954892,24962113,24967931,24974310,24975357,24976304,24976876,24977777,24978192,24978406	24955062,24962209,24968082,24974456,24975509,24976416,24977029,24977916,24978318,24978723	0.733333
testis_male_adult_37_years	chr7	71284049	71284054	71284049	+	High_confidence	6	11	21	0.938614	4.165894	chr7	71283790	71284249	LTR|ERV1|LTR12_	+	chr7	71283995	71713600	GALNT17|ENST00000498380.6	+	71283995,71335549,71388234,71415888,71420907,71571284,71665410,71669971,71677210,71710760,71712017	71284635,71335733,71388401,71416063,71421105,71571402,71665596,71670109,71677306,71710928,71713600	0.952381
testis_male_adult_37_years	chr1	25870658	25870696	25870658	-	High_confidence	6	8	28	1.251485	3.689892	chr1	25870560	25870687	SINE|MIR|MIR1_Amn	-	chr1	25861209	25871253	PAQR7|ENST00000374296.3	-	25861209,25870608	25863861,25871253	0.964286
testis_male_adult_37_years	chr10	7119740	7119787	7119777	-	RAMPAGE_only	7	10	26	1.162093	4.363713	chr10	7119155	7120018	LTR|Gypsy|MamGypsy2-I	+	chr10	6935104	7012658	STRG.170067.1	-	6935104,7012574	6935408,7012658	0.692308
testis_male_adult_37_years	chr10	16762149	16762160	16762149	-	RAMPAGE_only	5	5	14	0.625742	3.392747	chr10	16762078	16762200	LINE|L2|L2b	+	chr10	16590610	16817383	RSU1|ENST00000377921.7	-	16590610,16695022,16752538,16752917,16754870,16764389,16782033,16816972	16593496,16695155,16752653,16753000,16754989,16764510,16782084,16817383	0.642857
testis_male_adult_37_years	chr7	133370551	133370552	133370551	+	RAMPAGE_only	11	11	17	0.759830	3.969816	chr7	133370157	133370732	LTR|ERV1|MER4A1_	-	chr7	133396138	133630138	EXOC4|ENST00000486409.6	+	133396138,133475327,133480049,133630044	133396414,133475473,133480138,133630138	0.764706
testis_male_adult_37_years	chr11	123061207	123061328	123061256	-	High_confidence	66	68	323	14.436773	5.590697	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.950464
testis_male_adult_37_years	chr6	9041624	9041625	9041624	+	High_confidence	428	428	441	19.710888	5.594524	chr6	9040590	9042044	LTR|ERV1|LTR12C	+	chr6	9041624	9096238	AL591485.1|ENST00000644070.1	+	9041624,9044261,9046419,9092216,9095344	9042162,9044392,9046491,9092308,9096238	0.888889
testis_male_adult_37_years	chr3	42770599	42770600	42770599	+	High_confidence	797	800	863	38.572554	5.491637	chr3	42769529	42771022	LTR|ERV1|LTR12C	+	chr3	42770611	42773635	LOC729083|NR_122070.1	+	42770611,42773204	42771077,42773635	0.968714
testis_male_adult_37_years	chr1	100363115	100363163	100363162	+	High_confidence	43	43	101	4.514285	4.175069	chr1	100362798	100363434	LTR|ERV1|LTR9	-	chr1	100363160	100484639	CDC14A|ENST00000646563.1	+	100363160,100377545,100390731,100424221,100439931,100442933,100462650,100467955,100484291	100363225,100377621,100390824,100424301,100439998,100442996,100462881,100468094,100484639	0.811881
testis_male_adult_37_years	chr20	31441247	31441291	31441260	+	High_confidence	9	9	21	0.938614	3.997670	chr20	31441151	31441518	LINE|L2|L2b	-	chr20	31440518	31450257	DEFB123|NM_153324.3	+	31440518,31450028	31440756,31450257	0.809524
testis_male_adult_37_years	chr9	31724514	31724542	31724541	-	RAMPAGE_only	3	4	10	0.446959	2.725481	chr9	31724347	31724708	LTR|ERVL-MaLR|THE1B	-	chr9	31694934	31695397	STRG.159796.1	-	31694934	31695397	0.600000
testis_male_adult_37_years	chr4	92040988	92040998	92040988	-	High_confidence	4	5	12	0.536351	2.663533	chr4	92038896	92045289	LTR|ERV1|Harlequin-int	-	chr4	92040372	92041087	STRG.77937.1	-	92040372	92041087	0.833333
testis_male_adult_37_years	chr2	131554983	131555007	131554986	+	RAMPAGE_only	46	46	170	7.598302	6.343543	chr2	131554702	131555824	LINE|L1|L1MA6	-	chr2	131543521	131591430	STRG.36693.3	+	131543521,131545045,131555071,131564860,131577507,131580151,131582017,131588664	131543823,131553166,131557463,131575207,131577618,131580264,131582129,131591430	0.935294
testis_male_adult_37_years	chr2	23825210	23825223	23825210	-	RAMPAGE_only	5	6	21	0.938614	3.021928	chr2	23824939	23825243	SINE|Alu|AluJr	-	chr2	23821648	23826593	STRG.25619.15	-	23821648,23825149	23823569,23826593	0.666667
testis_male_adult_37_years	chrY	3786270	3786334	3786333	+	High_confidence	53	72	293	13.095896	5.770550	chrY	3785809	3788528	LTR|ERV1|LTR46-int	-	chrY	3786270	3805949	STRG.298449.1	+	3786270,3800650,3803828,3804384	3786390,3800746,3803952,3805949	0.918089
testis_male_adult_37_years	chr1	230272083	230272110	230272109	-	RAMPAGE_only	12	12	50	2.234795	4.958563	chr1	230271314	230272176	LTR|ERVL|MER21C	-	chr1	230258693	230268483	AL136988.2|ENST00000440729.1	-	230258693,230259477,230268302	230259087,230259763,230268483	0.580000
testis_male_adult_37_years	chrX	53220847	53220887	53220847	-	RAMPAGE_only	4	5	19	0.849222	3.308271	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	0.894737
testis_male_adult_37_years	chr14	57799506	57799516	57799515	-	High_confidence	5	5	10	0.446959	2.947703	chr14	57799017	57803576	LINE|L1|L1PA11	+	chr14	57594044	57799507	SLC35F4|ENST00000557430.1	-	57594044,57602397,57604042,57799411	57594124,57602543,57604255,57799507	0.500000
testis_male_adult_37_years	chr10	47140055	47140056	47140055	-	High_confidence	10	14	14	0.625742	3.546594	chr10	47139914	47140334	LTR|ERV1|LTR12F	-	chr10	47139371	47139827	STRG.173974.1	-	47139371	47139827	0.785714
testis_male_adult_37_years	chr7	17846353	17846377	17846353	-	RAMPAGE_only	9	10	19	0.849222	4.037401	chr7	17846275	17846440	SINE|MIR|MIRb	-	chr7	17790760	17940431	STRG.127145.6	-	17790760,17799008,17803418,17814833,17816181,17821508,17826021,17830009,17834051,17834760,17839806,17845594,17850346,17850825,17868406,17873527,17875479,17875668,17890362,17891545,17893331,17897333,17940283	17798758,17801659,17803580,17814944,17816289,17821648,17826091,17830047,17834184,17834865,17840000,17845694,17850435,17850964,17868490,17873616,17875581,17875790,17890484,17891635,17893434,17897446,17940431	0.842105
testis_male_adult_37_years	chr19	51027655	51027678	51027667	-	High_confidence	13	13	48	2.145403	5.053509	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.937500
testis_male_adult_37_years	chr17	9809484	9809485	9809484	-	High_confidence	39	40	43	1.921923	3.794236	chr17	9809292	9809810	LTR|ERV1|LTR12F	-	chr17	9809104	9809466	STRG.250617.1	-	9809104	9809466	0.767442
testis_male_adult_37_years	chr2	166611481	166611482	166611481	-	High_confidence	226	227	311	13.900422	5.421176	chr2	166611166	166611890	LTR|ERV1|LTR12C	-	chr2	166608040	166611524	STRG.39622.2	-	166608040	166611524	0.942122
testis_male_adult_37_years	chr12	105353500	105353531	105353500	+	High_confidence	8	8	41	1.832532	4.863292	chr12	105353069	105353608	LTR|ERVL-MaLR|MLT1K	-	chr12	105353508	105371203	C12orf75|ENST00000548336.1	+	105353508,105365806,105366616,105367471,105370633	105353586,105365842,105366696,105367509,105371203	0.975610
testis_male_adult_37_years	chr20	23030862	23030871	23030862	+	High_confidence	6	6	10	0.446959	2.721928	chr20	23030836	23031021	DNA|hAT-Charlie|MER3	+	chr20	23030900	23038274	STRG.274109.1	+	23030900,23038222	23031688,23038274	0.900000
testis_male_adult_37_years	chr5	66504136	66504140	66504136	+	High_confidence	48	50	117	5.229419	4.826550	chr5	66503112	66504552	LTR|ERV1|LTR12C	+	chr5	66504147	66505174	STRG.94513.1	+	66504147	66505174	0.965812
testis_male_adult_37_years	chr1	30230176	30230242	30230198	+	High_confidence	44	45	159	7.106647	6.071866	chr1	30230182	30230274	LTR|ERV1|LTR17	+	chr1	30230151	30261185	STRG.2740.1	+	30230151,30253342,30255978,30260803	30230352,30253464,30256098,30261185	0.849057
testis_male_adult_37_years	chr6	117372854	117372855	117372854	-	High_confidence	191	193	198	8.849787	5.412558	chr6	117372437	117373840	LTR|ERV1|LTR12C	-	chr6	117371483	117372973	STRG.119523.2	-	117371483	117372973	0.959596
testis_male_adult_37_years	chr7	10973299	10973324	10973321	+	High_confidence	5	5	15	0.670438	3.807355	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.800000
testis_male_adult_37_years	chr5	1380069	1380070	1380069	-	High_confidence	535	536	684	30.571990	5.513609	chr5	1379679	1380686	LTR|ERV1|LTR12D	-	chr5	1363581	1380067	LINC01511|ENST00000504989.1	-	1363581,1379561	1364691,1380067	0.948830
testis_male_adult_37_years	chr5	90290034	90290058	90290054	-	High_confidence	29	50	116	5.184723	6.230959	chr5	90289818	90290215	LTR|ERVL-MaLR|MLT1B	-	chr5	90158338	90290071	LINC01339|NR_120601.1	-	90158338,90160528,90200466,90260545,90261667,90289895	90158519,90160589,90200528,90260586,90261719,90290071	0.577586
testis_male_adult_37_years	chr17	64977540	64977557	64977540	-	RAMPAGE_only	3	3	11	0.491655	2.646439	chr17	64977516	64977693	LINE|L2|L2c	+	chr17	64968037	64975840	STRG.256540.1	-	64968037,64972533,64972753,64973241,64974554,64975559	64968381,64972662,64972927,64973517,64974641,64975840	0.818182
testis_male_adult_37_years	chr9	79567744	79567762	79567758	-	RAMPAGE_only	30	32	73	3.262800	5.243133	chr9	79567459	79568146	LTR|ERVL|LTR41	-	chr9	79515642	79532342	LNCARSR|ENST00000413352.3	-	79515642,79532216	79518448,79532342	0.958904
testis_male_adult_37_years	chr11	67619986	67619987	67619986	+	High_confidence	10	10	13	0.581047	3.546594	chr11	67618852	67620425	LTR|ERV1|LTR12C	+	chr11	67619943	67626375	STRG.189245.1	+	67619943,67626053	67620536,67626375	1.000000
testis_male_adult_37_years	chr1	221234000	221234035	221234034	+	High_confidence	72	74	117	5.229419	5.998109	chr1	221233625	221234356	LTR|ERV1|LTR12D	+	chr1	221233964	221234452	STRG.19464.1	+	221233964	221234452	0.649573
testis_male_adult_37_years	chr4	132062216	132062217	132062216	-	High_confidence	51	51	69	3.084017	5.121003	chr4	132061901	132063231	LTR|ERV1|LTR12C	-	chr4	132060448	132062353	STRG.82123.1	-	132060448,132061868	132060490,132062353	0.826087
testis_male_adult_37_years	chr17	57994931	57994932	57994931	-	High_confidence	11	11	11	0.491655	3.459432	chr17	57994853	57994915	LINE|L2|L2a	-	chr17	57989043	57994850	AC015813.1|ENST00000585065.1	-	57989043,57990881	57989796,57994850	1.000000
testis_male_adult_37_years	chr11	64420328	64420367	64420349	+	High_confidence	9	10	36	1.609052	4.743289	chr11	64420124	64420355	DNA|TcMar-Tigger|Tigger15a	-	chr11	64420390	64421057	AP003774.2|ENST00000569737.1	+	64420390,64420731	64420622,64421057	0.888889
testis_male_adult_37_years	chr10	95697656	95697670	95697656	+	RAMPAGE_only	3	3	6	0.268175	2.584963	chr10	95697436	95697843	LTR|ERVL-MaLR|MSTC	+	chr10	95694151	95698150	STRG.178289.1	+	95694151,95697806	95694320,95698150	0.500000
testis_male_adult_37_years	chr5	54648658	54648665	54648658	-	High_confidence	33	33	96	4.290806	4.892051	chr5	54648319	54649572	LTR|ERV1|LTR12C	-	chr5	54643633	54648684	STRG.93442.2	-	54643633,54648243	54646351,54648684	0.979167
testis_male_adult_37_years	chr3	19703408	19703460	19703408	+	High_confidence	20	22	110	4.916548	4.805758	chr3	19702399	19703772	LTR|ERV1|LTR12C	+	chr3	19703415	19728965	STRG.50008.1	+	19703415,19722912,19727061	19703776,19723039,19728965	0.954545
testis_male_adult_37_years	chr5	56910793	56910855	56910793	+	High_confidence	4	4	35	1.564356	4.631293	chr5	56910787	56910937	SINE|MIR|MIRc	+	chr5	56910776	56913982	SETD9|ENST00000477359.1	+	56910776,56911041,56913010,56913873	56910922,56911111,56913134,56913982	0.542857
testis_male_adult_37_years	chr2	95829095	95829256	95829174	-	RAMPAGE_only	20	23	144	6.436208	5.049668	chr2	95826981	95830764	LINE|L1|L1PA12	-	chr2	95807117	95940908	STRG.33314.5	-	95807117,95814049,95851165,95851693,95852125,95853708,95855265,95857308,95859860,95867439,95876438,95880426,95880594,95882301,95882468,95884172,95884339,95886047,95886215,95887924,95888091,95889798,95889965,95891664,95891831,95893532,95893695,95895398,95895561,95897269,95897436,95899144,95899307,95901014,95901177,95903052,95904760,95904923,95906630,95906793,95908668,95910372,95910539,95912243,95912406,95914107,95914274,95915979,95916142,95917854,95918013,95919732,95919891,95921606,95921781,95923494,95923660,95925351,95925518,95927213,95927380,95929071,95929238,95935453,95935615,95938986	95813957,95837108,95851195,95851787,95852196,95853861,95856180,95857492,95860074,95867581,95876509,95880499,95880623,95882374,95882497,95884245,95884368,95886120,95886244,95887997,95888120,95889871,95889994,95891737,95891860,95893605,95893724,95895471,95895590,95897342,95897465,95899217,95899336,95901087,95902958,95903081,95904833,95904952,95906703,95906822,95908697,95910445,95910568,95912316,95912435,95914180,95914303,95916052,95916171,95917927,95918042,95919805,95919920,95921679,95921810,95923567,95923689,95925424,95925547,95927286,95927409,95929144,95929267,95935526,95935644,95940908	0.993056
testis_male_adult_37_years	chr1	111755199	111755248	111755247	+	High_confidence	8	8	24	1.072701	4.277613	chr1	111755187	111755259	LINE|L2|L2a	-	chr1	111755304	111768016	DDX20|ENST00000369702.4	+	111755304,111756645,111759399,111760473,111760705,111760986,111761225,111762254,111762676,111762905,111765736	111756225,111756740,111759568,111760588,111760848,111761125,111761284,111762337,111762782,111763007,111768016	0.916667
testis_male_adult_37_years	chr12	122064297	122064351	122064350	+	High_confidence	5	5	25	1.117397	4.163856	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122064356	122065772	STRG.210713.2	+	122064356	122065772	0.520000
testis_male_adult_37_years	chrX	24151402	24151415	24151402	+	High_confidence	21	21	37	1.653748	4.777021	chrX	24151340	24151459	LINE|L2|L2b	-	chrX	24151425	24172914	ZFX|ENST00000480195.1	+	24151425,24152719,24172714	24151481,24152830,24172914	0.594595
testis_male_adult_37_years	chr3	131027619	131027627	131027619	-	High_confidence	29	29	50	2.234795	4.718095	chr3	131027520	131027791	LINE|L2|L2a	-	chr3	131025157	131027649	ASTE1|ENST00000505545.5	-	131025157,131025473,131027247,131027470	131025331,131025594,131027324,131027649	0.620000
testis_male_adult_37_years	chr17	62520784	62520841	62520840	+	RAMPAGE_only	6	7	24	1.072701	4.303509	chr17	62520890	62521168	SINE|Alu|AluJr	+	chr17	62481120	62606241	TLK2|ENST00000581041.5	+	62481120,62520772,62522203,62523133,62536169,62553662,62560015,62565000,62573214,62576708,62578476,62580110,62586134,62596584,62600650,62602041,62606129	62481206,62520844,62522273,62523177,62536337,62553755,62560126,62565137,62573367,62576775,62578574,62580192,62586226,62596674,62600820,62602180,62606241	0.583333
testis_male_adult_37_years	chr15	40489488	40489500	40489488	+	High_confidence	3	3	12	0.536351	2.663533	chr15	40489511	40489977	LINE|L1|L1M3f	+	chr15	40489579	40490001	STRG.234433.1	+	40489579	40490001	0.666667
testis_male_adult_37_years	chr7	114076399	114076400	114076399	-	High_confidence	283	285	325	14.526165	5.125439	chr7	114075983	114077406	LTR|ERV1|LTR12C	-	chr7	114075161	114076417	STRG.136486.2	-	114075161	114076417	0.975385
testis_male_adult_37_years	chr9	91487290	91487311	91487302	-	High_confidence	14	14	28	1.251485	4.282484	chr9	91487086	91487313	LTR|ERVL-MaLR|MLT1K	-	chr9	91484277	91487327	STRG.164288.1	-	91484277,91487031	91484715,91487327	0.750000
testis_male_adult_37_years	chr11	46220778	46220801	46220800	-	High_confidence	3	3	9	0.402263	2.500000	chr11	46220799	46220877	LINE|L2|L2c	+	chr11	46213827	46220438	AC024475.3|ENST00000635389.1	-	46213827,46215726,46220362	46214224,46215891,46220438	0.666667
testis_male_adult_37_years	chr12	110688657	110688658	110688657	-	High_confidence	7	7	11	0.491655	3.277613	chr12	110688571	110688794	SINE|MIR|MIRc	+	chr12	110648796	110688709	HVCN1|ENST00000356742.9	-	110648796,110650167,110651216,110655233,110661163,110683224,110687974	110649475,110650280,110651448,110655338,110661448,110683264,110688709	1.000000
testis_male_adult_37_years	chr1	20685285	20685320	20685297	-	High_confidence	6	9	38	1.698444	5.003258	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.868421
testis_male_adult_37_years	chr3	44836925	44836947	44836946	+	High_confidence	52	98	301	13.453463	5.016567	chr3	44836672	44837164	LTR|ERV1|LOR1a	-	chr3	44836941	44853021	STRG.53085.5	+	44836941,44838274,44840354,44841073,44843124,44847984,44848520,44851786,44852207,44852672	44836989,44838421,44840456,44841238,44843234,44848057,44848558,44851952,44852339,44853021	0.956811
testis_male_adult_37_years	chr13	18854776	18854796	18854776	-	RAMPAGE_only	2	2	9	0.402263	2.641604	chr13	18854440	18854738	SINE|Alu|AluY	-	chr13	18816717	18871967	ANKRD20A9P|ENST00000457997.1	-	18816717,18818273,18819039,18826665,18828821,18833716,18835384,18838268,18839976,18841593,18845742,18851771,18851936,18854776,18858803,18861513,18868084,18870667,18871860	18816946,18818453,18819364,18826795,18828931,18833849,18835769,18838801,18840157,18841713,18845813,18851844,18851965,18854862,18858873,18861544,18868133,18870803,18871967	0.777778
testis_male_adult_37_years	chr7	107580245	107580272	107580264	+	High_confidence	847	852	4882	218.205343	6.623069	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.961491
testis_male_adult_37_years	chr10	1773365	1773380	1773379	-	High_confidence	3	3	7	0.312871	2.584963	chr10	1773067	1773467	LTR|ERV1|MER50	+	chr10	1771008	1773427	STRG.169080.1	-	1771008,1772970	1772613,1773427	0.857143
testis_male_adult_37_years	chr1	113759894	113759899	113759894	-	High_confidence	3	3	11	0.491655	2.845351	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.818182
testis_male_adult_37_years	chr16	10429483	10429484	10429483	+	High_confidence	5	5	7	0.312871	2.584963	chr16	10429360	10429638	SINE|Alu|AluSz6	-	chr16	10428900	10483638	ATF7IP2|ENST00000568027.5	+	10428900,10430610,10433524,10438100,10440363,10472109,10473478,10473922,10480878,10481835	10429016,10431455,10433649,10438235,10440462,10472183,10473534,10473989,10480964,10483638	0.714286
testis_male_adult_37_years	chr4	173289464	173289482	173289464	-	High_confidence	11	11	24	1.072701	3.970573	chr4	173289284	173289916	LTR|ERV1|MER61F	-	chr4	173289078	173289457	STRG.86249.2	-	173289078	173289457	0.625000
testis_male_adult_37_years	chr16	64343879	64343908	64343907	-	High_confidence	8	8	40	1.787836	3.350413	chr16	64343711	64345204	LTR|ERV1|LTR12C	+	chr16	64242607	64343909	AC012322.1|ENST00000561657.1	-	64242607,64245743,64294079,64317565,64343528	64242850,64245777,64294166,64317681,64343909	0.875000
testis_male_adult_37_years	chr5	152347679	152347680	152347679	-	RAMPAGE_only	12	12	12	0.536351	3.251629	chr5	152347584	152347683	DNA|TcMar-Mariner|MADE1	+	chr5	151662487	151687309	STRG.103604.1	-	151662487,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687309	0.916667
testis_male_adult_37_years	chr7	158859018	158859044	158859018	+	RAMPAGE_only	2	2	11	0.491655	3.277613	chr7	158858991	158859159	SINE|Alu|AluJb	-	chr7	158856577	158946192	WDR60|NM_018051.4	+	158856577,158869854,158871141,158876608,158879683,158884563,158887020,158891264,158901738,158902375,158905988,158911549,158912984,158914232,158918739,158922376,158923570,158926186,158926401,158926991,158930454,158934128,158934417,158941924,158945580	158856750,158869908,158871562,158876691,158879989,158884619,158887075,158891333,158901816,158902595,158906091,158911679,158913096,158914321,158918869,158922549,158923733,158926300,158926463,158927043,158930515,158934228,158934549,158942148,158946192	1.000000
testis_male_adult_37_years	chr1	110473745	110473765	110473760	+	High_confidence	12	12	27	1.206789	3.509275	chr1	110473468	110474039	LTR|ERVL|MER74B	-	chr1	110473775	110474980	AL358215.2|ENST00000634812.2	+	110473775,110473943,110474707	110473794,110474082,110474980	0.925926
testis_male_adult_37_years	chr7	133370461	133370462	133370461	+	RAMPAGE_only	16	16	16	0.715134	3.625000	chr7	133370157	133370732	LTR|ERV1|MER4A1_	-	chr7	133356386	133375028	EXOC4|ENST00000480840.1	+	133356386,133374827	133356573,133375028	0.562500
testis_male_adult_37_years	chr20	13731810	13731811	13731810	-	RAMPAGE_only	9	10	14	0.625742	3.026987	chr20	13731644	13731828	LTR|ERVL|MER21A	+	chr20	13714325	13719392	STRG.273765.4	-	13714325,13717367	13715167,13719392	0.928571
testis_male_adult_37_years	chr2	96638059	96638081	96638059	-	High_confidence	2	2	6	0.268175	2.584963	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96631337	96638060	KANSL3|ENST00000475820.1	-	96631337,96636920,96637948	96631543,96637185,96638060	0.833333
testis_male_adult_37_years	chr17	35936181	35936196	35936195	-	RAMPAGE_only	5	5	12	0.536351	2.845351	chr17	35936149	35936590	LTR|ERVL-MaLR|MLT1O	+	chr17	35934517	35943670	LYZL6|ENST00000618542.4	-	35934517,35936754,35937757,35939217,35943566	35934865,35936833,35937916,35939444,35943670	0.916667
testis_male_adult_37_years	chr3	33289665	33289682	33289665	+	High_confidence	10	10	32	1.430269	4.161406	chr3	33289358	33289726	LINE|L1|L1MEf	+	chr3	33289668	33373303	FBXL2|ENST00000464164.5	+	33289668,33297663,33358966,33359282,33364624,33373091,33373259	33289795,33297725,33359021,33359357,33364719,33373160,33373303	0.750000
testis_male_adult_37_years	chr6	133088102	133088126	133088125	+	High_confidence	55	55	159	7.106647	5.779587	chr6	133087965	133088545	LTR|ERVL-MaLR|MLT1E2	+	chr6	133088127	133106198	LINC00326|ENST00000434443.1	+	133088127,133096509,133100006,133106094	133088577,133096563,133100184,133106198	0.968553
testis_male_adult_37_years	chr20	18793999	18794014	18793999	-	High_confidence	4	4	10	0.446959	2.725481	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18786064	18793993	LINC00652|ENST00000412553.5	-	18786064,18789573,18793664	18788898,18789709,18793993	0.900000
testis_male_adult_37_years	chr4	41385702	41385723	41385702	+	High_confidence	7	7	13	0.581047	3.392747	chr4	41385742	41385878	LINE|RTE-BovB|MamRTE1	+	chr4	41385802	41613534	LIMCH1|ENST00000511424.5	+	41385802,41494535,41524408,41598919,41603874,41605893,41613465	41385894,41494606,41524478,41599026,41603905,41606004,41613534	0.923077
testis_male_adult_37_years	chr6	20301716	20301717	20301716	-	High_confidence	16	17	18	0.804526	4.058814	chr6	20301080	20302540	LTR|ERV1|LTR12C	+	chr6	20299830	20301848	STRG.109500.1	-	20299830	20301848	0.944444
testis_male_adult_37_years	chr5	151687240	151687252	151687244	-	High_confidence	15	16	45	2.011315	4.958520	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151662487	151687309	STRG.103604.1	-	151662487,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687309	0.844444
testis_male_adult_37_years	chr12	27704431	27704440	27704439	-	High_confidence	5	5	10	0.446959	2.921928	chr12	27704019	27704605	DNA|TcMar-Tigger|Tigger3c	-	chr12	27696555	27704411	AC009509.1|ENST00000536922.5	-	27696555,27703460,27704322	27696978,27703620,27704411	0.900000
testis_male_adult_37_years	chr5	19739486	19739487	19739486	-	RAMPAGE_only	16	17	21	0.938614	3.884184	chr5	19739236	19739616	LTR|ERVL-MaLR|MLT1H	+	chr5	19473614	19838824	CDH18|ENST00000515257.6	-	19473614,19483300,19543868,19571578,19591056,19612433,19721346,19746941,19838758	19473716,19483446,19544005,19571832,19591244,19612601,19721466,19747236,19838824	0.809524
testis_male_adult_37_years	chr5	107010999	107011035	107010999	-	High_confidence	4	6	20	0.893918	4.142664	chr5	107010874	107011198	LTR|ERVL-MaLR|THE1D	-	chr5	106815196	107011014	LOC102467213|NR_104671.1	-	106815196,106818398,106969883,107010939	106815546,106818477,106969951,107011014	0.700000
testis_male_adult_37_years	chr5	162883444	162883451	162883444	+	High_confidence	61	70	100	4.469589	5.373632	chr5	162882732	162883864	LTR|ERV1|LTR12C	+	chr5	162883460	162884031	STRG.104601.1	+	162883460	162884031	0.900000
testis_male_adult_37_years	chr1	166985232	166985240	166985232	+	High_confidence	28	29	70	3.128712	5.141863	chr1	166985042	166986207	LINE|L1|L1MEc	+	chr1	166984485	167022210	STRG.14539.3	+	166984485,166989400,166989736,166991377,166992685,166994027,167004179,167005075,167005255,167016221,167017826,167021084,167021667	166985348,166989484,166989829,166991477,166992841,166994069,167004304,167005130,167005397,167016284,167017959,167021160,167022210	0.857143
testis_male_adult_37_years	chr13	90495721	90495722	90495721	+	High_confidence	174	175	220	9.833096	5.175058	chr13	90494636	90496238	LTR|ERV1|LTR12C	+	chr13	90495709	90499188	STRG.219300.1	+	90495709,90498209	90496392,90499188	0.981818
testis_male_adult_37_years	chr6	24542815	24542855	24542815	-	High_confidence	3	3	15	0.670438	3.773557	chr6	24542728	24543143	LTR|ERV1|MER101	+	chr6	24541133	24542709	STRG.110353.1	-	24541133,24542587	24541345,24542709	0.666667
testis_male_adult_37_years	chr10	29367260	29367261	29367260	+	High_confidence	264	267	313	13.989814	5.214252	chr10	29366011	29367676	LTR|ERV1|LTR12C	+	chr10	29367273	29375604	STRG.172490.1	+	29367273,29368239,29374319,29375582	29367700,29368417,29374450,29375604	0.968051
testis_male_adult_37_years	chr1	152654168	152654174	152654168	-	RAMPAGE_only	3	3	9	0.402263	3.169925	chr1	152654087	152654627	LTR|ERVL|LTR50	+	chr1	152644392	152644717	LCEP4|ENST00000422768.1	-	152644392	152644717	0.555556
testis_male_adult_37_years	chr5	137673842	137673858	137673850	-	High_confidence	10	10	38	1.698444	4.365689	chr5	137673728	137673810	LINE|L2|L2c	-	chr5	137671766	137673851	KLHL3|ENST00000514149.1	-	137671766,137672666,137673674	137671952,137672858,137673851	0.710526
testis_male_adult_37_years	chr2	55520824	55520847	55520846	+	RAMPAGE_only	4	4	8	0.357567	2.500000	chr2	55520669	55521052	LINE|CR1|L3	+	chr2	55519730	55545075	STRG.29726.2	+	55519730,55522101,55523720,55528877,55533872,55535711,55537482,55543937,55544219,55544906	55520479,55522166,55523822,55528992,55533960,55535763,55537585,55544074,55544369,55545075	1.000000
testis_male_adult_37_years	chr17	68944803	68944838	68944837	+	RAMPAGE_only	5	6	13	0.581047	2.918296	chr17	68944814	68945164	LINE|L1|L1MCc	+	chr17	69004713	69018323	ABCA9-AS1|ENST00000458677.1	+	69004713,69011982,69012251,69018103	69004793,69012103,69012353,69018323	0.846154
testis_male_adult_37_years	chr4	2762744	2762745	2762744	-	High_confidence	355	357	378	16.895047	5.090108	chr4	2762353	2763411	LTR|ERV1|LTR12E	-	chr4	2761055	2762729	STRG.69626.1	-	2761055	2762729	0.957672
testis_male_adult_37_years	chr8	84063918	84063938	84063937	+	High_confidence	7	9	20	0.893918	3.584184	chr8	84063104	84064180	LINE|L1|L1MA2	-	chr8	84063368	84064471	STRG.149860.1	+	84063368	84064471	0.650000
testis_male_adult_37_years	chr21	44305172	44305186	44305185	+	High_confidence	31	34	53	2.368882	5.023025	chr21	44305083	44305240	SINE|MIR|MIRc	+	chr21	44305193	44313954	PFKL|ENST00000491298.1	+	44305193,44306680,44311005,44312104,44312977,44313637,44313912	44305417,44306754,44311083,44312294,44313143,44313682,44313954	0.773585
testis_male_adult_37_years	chr2	162282816	162282831	162282830	-	RAMPAGE_only	4	5	10	0.446959	2.947703	chr2	162282721	162282894	LINE|L2|L2c	-	chr2	162267092	162311299	IFIH1|ENST00000649554.1	-	162267092,162267478,162268086,162272225,162273794,162276686,162277414,162278204,162279995,162281327,162282365,162288134,162293563,162306708,162310764,162311236	162267379,162267569,162268277,162272387,162273944,162276946,162277693,162278328,162280112,162281545,162282576,162288355,162293668,162306855,162310933,162311299	0.900000
testis_male_adult_37_years	chr3	125314949	125314975	125314974	-	RAMPAGE_only	4	4	10	0.446959	2.503258	chr3	125314776	125315083	SINE|Alu|AluJb	+	chr3	125232075	125375249	ZNF148|ENST00000484491.5	-	125232075,125234210,125277725,125279123,125288102,125313307,125323387,125331157,125375101	125233939,125234329,125277809,125279247,125288228,125313656,125323444,125331238,125375249	0.800000
testis_male_adult_37_years	chr1	112699206	112699217	112699206	+	High_confidence	6	12	24	1.072701	3.969002	chr1	112699125	112699293	DNA|hAT-Charlie|MER5B	+	chr1	112698307	112700739	MOV10|ENST00000490413.1	+	112698307,112698714,112699457,112699893,112700415	112698478,112698789,112699810,112700340,112700739	0.958333
testis_male_adult_37_years	chr20	45670249	45670270	45670269	-	High_confidence	5	5	9	0.402263	2.947703	chr20	45669558	45672865	LINE|L1|L1PA15	+	chr20	45648562	45670270	WFDC11|ENST00000356562.6	-	45648562,45649256,45650500,45667087,45670181	45648739,45649399,45650651,45667169,45670270	0.777778
testis_male_adult_37_years	chr18	7946867	7946898	7946878	+	High_confidence	76	77	186	8.313436	5.768263	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8143778	STRG.259265.3	+	7946869,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8143646	7946977,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8143778	0.935484
testis_male_adult_37_years	chr8	87971131	87971161	87971160	-	High_confidence	9	9	51	2.279490	4.923856	chr8	87970972	87972345	LTR|ERV1|LTR12C	+	chr8	87960959	87971679	STRG.150650.1	-	87960959,87963338,87964184,87970930	87961157,87963404,87964284,87971679	0.803922
testis_male_adult_37_years	chr3	9792215	9792222	9792220	-	High_confidence	2	4	8	0.357567	2.807355	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.500000
testis_male_adult_37_years	chr7	145697687	145697688	145697687	+	High_confidence	8	8	11	0.491655	2.913977	chr7	145696593	145697932	LTR|ERV1|LTR12C	-	chr7	145697299	145849260	STRG.140118.1	+	145697299,145783714,145842490,145848031,145848295	145698001,145785433,145842584,145848105,145849260	0.727273
testis_male_adult_37_years	chr4	113773111	113773112	113773111	+	High_confidence	16	17	18	0.804526	3.101881	chr4	113772162	113773491	LTR|ERV1|LTR12C	+	chr4	113773124	113773910	STRG.80004.1	+	113773124	113773910	0.722222
testis_male_adult_37_years	chr14	70255628	70255632	70255628	+	High_confidence	166	166	300	13.408767	5.681096	chr14	70255023	70256182	LTR|ERV1|LTR12C	+	chr14	70255650	70291859	STRG.228191.1	+	70255650,70275295,70291476	70256189,70275360,70291859	0.980000
testis_male_adult_37_years	chr17	50216886	50216912	50216886	+	RAMPAGE_only	8	9	26	1.162093	4.323856	chr17	50216890	50216997	LTR|ERVL|ERV3-16A3_I-int	+	chr17	50256422	50256853	STRG.255249.1	+	50256422	50256853	0.615385
testis_male_adult_37_years	chr8	57210753	57210784	57210783	+	RAMPAGE_only	3	4	12	0.536351	3.251629	chr8	57210497	57210965	LTR|ERV1|MER50	-	chr8	57193593	57219442	STRG.147096.2	+	57193593,57193884,57194300,57210733,57212387,57212877,57217777,57218269	57193689,57194011,57206354,57212315,57212583,57214272,57217976,57219442	1.000000
testis_male_adult_37_years	chr4	141220495	141220521	141220504	+	High_confidence	3	3	13	0.581047	3.546594	chr4	141220377	141220506	LINE|L2|L2	-	chr4	141220886	141234697	ZNF330|NM_014487.5	+	141220886,141222365,141224486,141224606,141226766,141229570,141230165,141231438,141232524,141233714	141221108,141222491,141224506,141224677,141226846,141229697,141230270,141231485,141232642,141234697	1.000000
testis_male_adult_37_years	chr11	68773414	68773415	68773414	-	RAMPAGE_only	6	6	6	0.268175	2.584963	chr11	68773373	68773449	LINE|CR1|L3	+	chr11	68754619	68815503	CPT1A|ENST00000540367.5	-	68754619,68759568,68760224,68761534,68762626,68773264,68775315,68780639,68781770,68784814,68793314,68794803,68796855,68799217,68803999,68807466,68812436,68815333	68754851,68759661,68760338,68761687,68762761,68773429,68775432,68780745,68781959,68785010,68793402,68794911,68796933,68799355,68804101,68807638,68812576,68815503	0.666667
testis_male_adult_37_years	chr15	93730950	93730956	93730955	+	RAMPAGE_only	3	3	7	0.312871	2.584963	chr15	93730786	93731343	LINE|L1|L1PA6	-	chr15	93753830	93756079	STRG.240269.1	+	93753830	93756079	0.571429
testis_male_adult_37_years	chr1	36419185	36419241	36419185	-	High_confidence	65	69	292	13.051200	5.753346	chr1	36419141	36419506	LINE|L2|L2b	+	chr1	36417910	36419293	OSCP1|ENST00000471369.1	-	36417910,36418990	36418255,36419293	0.804795
testis_male_adult_37_years	chr21	18168000	18168001	18168000	+	RAMPAGE_only	6	6	8	0.357567	2.807355	chr21	18167791	18168335	LTR|ERVL|MLT2A2	+	chr21	18244832	18267370	CHODL|NM_024944.2	+	18244832,18256508,18256969,18260199,18262790,18265953	18245302,18256818,18257127,18260286,18262893,18267370	0.875000
testis_male_adult_37_years	chr8	13334985	13335015	13335002	+	RAMPAGE_only	4	4	17	0.759830	3.852169	chr8	13334957	13335030	SINE|MIR|MIR	-	chr8	13338573	13342754	AC019270.1|ENST00000523495.1	+	13338573,13339446	13338753,13342754	0.529412
testis_male_adult_37_years	chr6	20033126	20033127	20033126	+	High_confidence	58	58	58	2.592362	4.879894	chr6	20032173	20033467	LTR|ERV1|LTR12C	+	chr6	20033134	20034447	STRG.109461.1	+	20033134	20034447	0.982759
testis_male_adult_37_years	chr4	26063517	26063520	26063517	-	High_confidence	17	17	26	1.162093	4.220176	chr4	26063111	26064545	LTR|ERV1|LTR12C	-	chr4	26059003	26063311	STRG.72882.1	-	26059003,26063088	26059049,26063311	0.807692
testis_male_adult_37_years	chr4	81154211	81154248	81154221	-	High_confidence	10	10	32	1.430269	4.304229	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.937500
testis_male_adult_37_years	chr9	73080369	73080370	73080369	-	High_confidence	24	25	27	1.206789	4.209867	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.925926
testis_male_adult_37_years	chr10	5199339	5199384	5199383	+	RAMPAGE_only	4	5	11	0.491655	3.277613	chr10	5199283	5200128	LTR|ERV1|LTR1A2	+	chr10	5196834	5218947	AKR1C4|NM_001818.3	+	5196834,5200180,5204376,5205756,5206274,5212615,5212993,5216710,5218717	5196951,5200348,5204493,5205834,5206397,5212725,5213159,5216793,5218947	0.818182
testis_male_adult_37_years	chr16	20674497	20674498	20674497	+	High_confidence	861	869	1094	48.897305	5.778639	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.878428
testis_male_adult_37_years	chr4	99019581	99019592	99019583	+	RAMPAGE_only	13	24	43	1.921923	5.100683	chr4	99013919	99021508	LTR|ERV1|HERVIP10B3-int	-	chr4	98995765	99041126	METAP1|ENST00000503247.5	+	98995765,99005768,99028866,99034229,99035399,99036042,99039373,99041042	98995867,99005870,99028918,99034342,99035460,99036089,99039465,99041126	0.651163
testis_male_adult_37_years	chr10	102449836	102449839	102449836	+	High_confidence	33	34	59	2.637058	5.139736	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.864407
testis_male_adult_37_years	chr13	63593437	63593438	63593437	+	High_confidence	615	618	836	37.365765	6.213336	chr13	63593164	63593967	LTR|ERV1|LTR12D	+	chr13	63593359	63665818	STRG.216171.1	+	63593359,63610246,63626821,63633341,63634245,63635460,63664466	63593982,63610436,63626946,63633396,63634331,63635523,63665818	0.964115
testis_male_adult_37_years	chr3	135038857	135038858	135038857	-	High_confidence	31	31	34	1.519660	4.137199	chr3	135038544	135039983	LTR|ERV1|LTR12C	-	chr3	135038384	135038841	STRG.61905.1	-	135038384	135038841	0.852941
testis_male_adult_37_years	chr5	106246944	106247004	106246962	+	High_confidence	27	33	160	7.151343	5.055711	chr5	106246078	106247392	LTR|ERV1|LTR12C	+	chr5	106246727	106247497	STRG.98409.1	+	106246727	106247497	0.906250
testis_male_adult_37_years	chr12	91179462	91179526	91179462	-	High_confidence	412	425	2080	92.967455	7.108990	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.599519
testis_male_adult_37_years	chr1	53368110	53368123	53368110	-	High_confidence	3	4	7	0.312871	2.521641	chr1	53367866	53368194	LINE|L2|L2b	+	chr1	53366667	53368245	AC119428.2|ENST00000449958.1	-	53366667,53368005	53367277,53368245	1.000000
testis_male_adult_37_years	chr8	82191749	82191750	82191749	-	High_confidence	60	60	70	3.128712	5.143061	chr8	82191310	82192805	LTR|ERV1|LTR12C	-	chr8	82190622	82192083	STRG.149615.1	-	82190622	82192083	0.985714
testis_male_adult_37_years	chr10	114612146	114612149	114612146	-	RAMPAGE_only	13	13	21	0.938614	3.536887	chr10	114612100	114612484	LTR|ERVL-MaLR|MSTD	+	chr10	114435953	114633104	STRG.180455.4	-	114435953,114437843,114439175,114440081,114441016,114441721,114444028,114445311,114447879,114451623,114465697,114468180,114472976,114473878,114487957,114491790,114545004,114547649,114571296,114575415,114601826,114631901	114436373,114437924,114439250,114440089,114441077,114441786,114444134,114445403,114448026,114451671,114465827,114468216,114473132,114473956,114488016,114491878,114545098,114547776,114571406,114575599,114601961,114633104	0.619048
testis_male_adult_37_years	chr19	37506279	37506292	37506291	-	High_confidence	3	3	7	0.312871	2.807355	chr19	37505997	37506297	LTR|ERVL|LTR16C	+	chr19	37497362	37506267	ZNF793-AS1|ENST00000585397.1	-	37497362,37505845,37506244	37497592,37506040,37506267	0.714286
testis_male_adult_37_years	chr11	123469402	123469415	123469402	+	RAMPAGE_only	7	8	18	0.804526	3.572469	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123480737	123594838	GRAMD1B|ENST00000633087.1	+	123480737,123577366,123584311,123594081,123594734	123480893,123577577,123584332,123594166,123594838	0.833333
testis_male_adult_37_years	chr19	50556737	50556759	50556737	-	High_confidence	4	4	12	0.536351	2.845351	chr19	50556522	50556743	LINE|L2|L2a	+	chr19	50556470	50556757	STRG.271308.1	-	50556470	50556757	0.750000
testis_male_adult_37_years	chr12	54744084	54744117	54744084	+	RAMPAGE_only	9	9	42	1.877227	4.765795	chr12	54738358	54744493	LINE|L1|L1PB1	-	chr12	54770824	54858350	STRG.202805.2	+	54770824,54855115,54856769,54858192	54770973,54855157,54856892,54858350	0.714286
testis_male_adult_37_years	chr4	47790247	47790282	47790247	-	High_confidence	17	17	70	3.128712	4.560793	chr4	47790242	47790586	LTR|ERV1|MER61A	+	chr4	47595481	47790260	CORIN|ENST00000508498.5	-	47595481,47600213,47603396,47623570,47623898,47626404,47641919,47643145,47645080,47653552,47661710,47665031,47674392,47677937,47680140,47683730,47692969,47744401,47763378,47786724,47790220	47595903,47600347,47603668,47623745,47623948,47626521,47642049,47643256,47645194,47653660,47661856,47665263,47674500,47678054,47680251,47683838,47693083,47744583,47763586,47786925,47790260	0.900000
testis_male_adult_37_years	chr2	118143019	118143020	118143019	-	RAMPAGE_only	17	17	24	1.072701	4.055958	chr2	118137000	118143020	LINE|L1|L1PA2	-	chr2	118132127	118186386	THORLNC|ENST00000414886.5	-	118132127,118176764,118183086,118186230	118132372,118176905,118183322,118186386	0.791667
testis_male_adult_37_years	chr13	39431620	39431621	39431620	-	RAMPAGE_only	7	7	7	0.312871	2.521641	chr13	39431458	39431902	LINE|L2|L2a	+	chr13	39342891	39603171	LHFPL6|ENST00000379589.3	-	39342891,39378427,39600831,39602882	39344054,39378526,39601390,39603171	1.000000
testis_male_adult_37_years	chr5	176313118	176313149	176313148	+	High_confidence	32	33	152	6.793776	6.231620	chr5	176313070	176313269	LTR|ERVL-MaLR|MLT1L	-	chr5	176313144	176345991	SIMC1|NM_001308200.1	+	176313144,176313690,176322272,176324628,176336719,176337061,176345182	176313484,176313845,176322425,176324757,176336876,176337146,176345991	0.927632
testis_male_adult_37_years	chr19	39984086	39984125	39984086	+	High_confidence	2	2	14	0.625742	3.521641	chr19	39983736	39984236	LTR|ERV1|MER51E	-	chr19	39984142	39986084	STRG.269374.1	+	39984142	39986084	0.857143
testis_male_adult_37_years	chr17	35868952	35868965	35868952	+	High_confidence	3	3	9	0.402263	2.947703	chr17	35868938	35869113	SINE|MIR|MIRc	+	chr17	35868966	35885863	AC015849.1|ENST00000605548.1	+	35868966,35884381,35884686,35885507,35885705	35869118,35884535,35884779,35885612,35885863	1.000000
testis_male_adult_37_years	chr16	78241521	78241543	78241542	-	High_confidence	5	5	9	0.402263	3.169925	chr16	78241416	78241735	SINE|Alu|AluSz	-	chr16	78234266	78241744	STRG.248337.1	-	78234266,78237631,78238087,78241197	78234997,78237682,78238188,78241744	1.000000
testis_male_adult_37_years	chr22	23705513	23705537	23705513	-	RAMPAGE_only	5	5	11	0.491655	3.277613	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23683743	23717267	STRG.283772.7	-	23683743,23686837,23690231,23700725,23705428,23709129,23709785,23714186,23715008,23717030	23683867,23686995,23695517,23700831,23705541,23709241,23709867,23714342,23715194,23717267	1.000000
testis_male_adult_37_years	chr2	147685627	147685643	147685627	-	High_confidence	74	74	122	5.452899	5.536304	chr2	147685312	147686798	LTR|ERV1|LTR12C	-	chr2	147674349	147685750	STRG.37861.1	-	147674349,147677253,147685246	147675577,147677322,147685750	0.942623
testis_male_adult_37_years	chr6	52579438	52579439	52579438	+	RAMPAGE_only	15	15	16	0.715134	3.773557	chr6	52579191	52579722	LTR|ERVL-MaLR|MLT1F1	+	chr6	52578365	52583559	TRAM2-AS1|ENST00000605910.1	+	52578365,52578501,52579374,52582862	52578393,52578594,52579609,52583559	0.937500
testis_male_adult_37_years	chr5	56488457	56488506	56488505	+	High_confidence	37	38	138	6.168033	5.411871	chr5	56487623	56488939	LTR|ERV1|LTR12C	+	chr5	56488385	56489125	STRG.93559.1	+	56488385	56489125	0.956522
testis_male_adult_37_years	chr5	19142319	19142358	19142319	-	High_confidence	43	44	158	7.061951	5.733604	chr5	19142064	19143334	LTR|ERV1|LTR12E	-	chr5	19139186	19142345	STRG.90575.3	-	19139186	19142345	0.841772
testis_male_adult_37_years	chr17	68081754	68081755	68081754	+	High_confidence	495	496	524	23.420647	5.305471	chr17	68080472	68082166	LTR|ERV1|LTR12C	+	chr17	68081743	68129586	STRG.256654.3	+	68081743,68101116,68114421,68115060,68125584	68082130,68101959,68114525,68125480,68129586	0.887405
testis_male_adult_37_years	chr3	39779531	39779572	39779531	+	RAMPAGE_only	4	4	15	0.670438	3.664498	chr3	39779576	39780159	LTR|ERV1|LTR12E	+	chr3	39788182	39803718	STRG.52352.1	+	39788182,39791329,39802809	39788734,39791509,39803718	0.600000
testis_male_adult_37_years	chr9	6622924	6622942	6622941	-	High_confidence	4	4	8	0.357567	2.521641	chr9	6622239	6623631	Retroposon|SVA|SVA_D	+	chr9	6586374	6623002	STRG.156770.4	-	6586374,6588400,6588617,6589194,6592142,6592850,6595013,6602108,6604587,6605130,6606591,6610191,6620183,6622784	6587283,6588442,6588702,6589292,6592223,6592990,6595119,6602205,6604784,6605278,6606669,6610356,6620319,6623002	0.875000
testis_male_adult_37_years	chr14	35794498	35794514	35794498	-	RAMPAGE_only	3	3	10	0.446959	3.169925	chr14	35794444	35794754	SINE|Alu|AluY	-	chr14	35548511	35808835	RALGAPA1|ENST00000553892.2	-	35548511,35549109,35570616,35572559,35595633,35605585,35625360,35627089,35634573,35635463,35651804,35654366,35655806,35659137,35664641,35671388,35672866,35674179,35674515,35677949,35683808,35684928,35686541,35689835,35700161,35721687,35723026,35725023,35728361,35738512,35742367,35748584,35750481,35752023,35756792,35760828,35762709,35770941,35775005,35775634,35808729	35548538,35549234,35570744,35572718,35595789,35605709,35625432,35627951,35634757,35635598,35651873,35654477,35655915,35659196,35664767,35671517,35673022,35674278,35674709,35678102,35683985,35685145,35686666,35690003,35700302,35721849,35723264,35725153,35728510,35738650,35742565,35748824,35750690,35752162,35756908,35761006,35762753,35770999,35775055,35775745,35808835	0.700000
testis_male_adult_37_years	chr8	133255232	133255251	133255239	-	High_confidence	5	5	10	0.446959	2.641604	chr8	133255180	133255391	SINE|MIR|MIRb	+	chr8	133237175	133256228	NDRG1|ENST00000519278.5	-	133237175,133242022,133244354,133246615,133247874,133248714,133250439,133254538	133239119,133242074,133244390,133246663,133247926,133248771,133250543,133256228	0.900000
testis_male_adult_37_years	chr6	153856377	153856409	153856377	-	High_confidence	226	227	654	29.231113	5.741611	chr6	153855959	153857474	LTR|ERV1|LTR12C	-	chr6	153697506	153856399	STRG.123319.2	-	153697506,153855615	153700131,153856399	0.993884
testis_male_adult_37_years	chr4	170979827	170979865	170979834	+	High_confidence	4	5	19	0.849222	3.947703	chr4	170979630	170979874	LINE|L1|L1PB1	-	chr4	170979879	170994648	STRG.85883.1	+	170979879,170993736	170980128,170994648	0.894737
testis_male_adult_37_years	chr21	32641904	32641912	32641911	-	High_confidence	6	6	13	0.581047	3.084963	chr21	32641733	32641912	SINE|MIR|MIR3	-	chr21	32631777	32641945	SYNJ1|ENST00000418301.3	-	32631777,32634860,32638907,32639670,32641895	32631801,32634881,32639125,32639779,32641945	0.769231
testis_male_adult_37_years	chr4	48828425	48828437	48828436	+	High_confidence	11	11	25	1.117397	4.563856	chr4	48827762	48828877	LTR|ERV1|LTR12C	+	chr4	48828395	48828848	STRG.74645.1	+	48828395	48828848	0.680000
testis_male_adult_37_years	chr16	48416936	48416969	48416936	-	RAMPAGE_only	6	6	22	0.983310	3.746439	chr16	48416182	48417559	Retroposon|SVA|SVA_B	-	chr16	48356363	48448402	SIAH1|ENST00000568007.5	-	48356363,48361487,48387053,48392756,48393879,48403569,48447339	48356510,48362430,48387268,48392892,48393960,48403667,48448402	0.545455
testis_male_adult_37_years	chr3	72664220	72664255	72664254	-	High_confidence	10	19	44	1.966619	4.624111	chr3	72664216	72664706	LTR|ERVL-MaLR|MLT1J	+	chr3	72663295	72664249	LOC105377162|NR_135531.1	-	72663295,72663929	72663567,72664249	0.863636
testis_male_adult_37_years	chr1	17755312	17755373	17755334	+	High_confidence	91	126	351	15.688258	5.595037	chr1	17755152	17755695	LTR|ERVL|LTR41	+	chr1	17755312	17827063	ACTL8|NM_030812.2	+	17755312,17822984,17825766	17755504,17823356,17827063	0.957265
testis_male_adult_37_years	chr1	72765027	72765050	72765049	+	High_confidence	5	5	12	0.536351	3.584963	chr1	72763753	72765386	LINE|L1|L1M4a2	+	chr1	72765030	72791282	AL583808.2|ENST00000418078.3	+	72765030,72775271,72778272,72780106,72783669,72786626,72791064	72765080,72775544,72778357,72780293,72783883,72786981,72791282	0.500000
testis_male_adult_37_years	chr10	15425614	15425625	15425614	-	High_confidence	30	30	77	3.441584	5.257346	chr10	15425197	15426640	LTR|ERV1|LTR12C	-	chr10	15424408	15425639	STRG.171007.1	-	15424408	15425639	0.974026
testis_male_adult_37_years	chr12	116759917	116759974	116759934	+	High_confidence	73	74	247	11.039885	4.293619	chr12	116756444	116760863	LINE|L1|L1PB1	-	chr12	116759324	116853629	STRG.209871.3	+	116759324,116766813,116779194,116833791,116835959,116836180,116849313	116760621,116766914,116779348,116833941,116836025,116836282,116853629	0.991903
testis_male_adult_37_years	chr6	36908816	36908817	36908816	-	High_confidence	4	7	7	0.312871	2.521641	chr6	36908660	36909099	LTR|ERVL-MaLR|MLT1C	-	chr6	36907564	36908632	STRG.112235.1	-	36907564	36908632	1.000000
testis_male_adult_37_years	chr3	193614816	193614855	193614823	+	High_confidence	4	5	24	1.072701	2.880838	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.916667
testis_male_adult_37_years	chr12	48852764	48852836	48852820	-	High_confidence	7	8	21	0.938614	4.106603	chr12	48852650	48852813	DNA|hAT-Charlie|MER20B	-	chr12	48840128	48852842	DDX23|ENST00000552555.1	-	48840128,48843939,48845573,48852623	48840151,48844050,48845782,48852842	0.571429
testis_male_adult_37_years	chr7	132260835	132260851	132260850	+	High_confidence	53	53	95	4.246110	4.923515	chr7	132260684	132261052	LINE|L1|L1MC1	+	chr7	132260860	132264289	LOC101928807|NR_134565.1	+	132260860,132261360,132264073	132260902,132261568,132264289	0.789474
testis_male_adult_37_years	chr13	51978987	51979034	51978987	-	RAMPAGE_only	8	8	23	1.028006	3.849224	chr13	51978764	51979263	LTR|ERVL-MaLR|MLT1G1	-	chr13	51970181	51977861	STRG.215323.12	-	51970181,51973934,51977405	51970749,51975168,51977861	0.956522
testis_male_adult_37_years	chr13	30259759	30259781	30259780	-	RAMPAGE_only	3	3	12	0.536351	3.418296	chr13	30259358	30265382	LINE|L1|L1PA3	+	chr13	30208479	30307026	KATNAL1|ENST00000380617.7	-	30208479,30210315,30227411,30230467,30231313,30240459,30240958,30255446,30280062,30283615,30306939	30208738,30210442,30227546,30230594,30231472,30240565,30241086,30255615,30280223,30283791,30307026	1.000000
testis_male_adult_37_years	chr2	104581925	104581959	104581925	-	High_confidence	5	5	15	0.670438	3.182006	chr2	104581849	104582030	DNA|hAT-Charlie|MER5A	-	chr2	104580820	104581890	AC013402.2|ENST00000424257.1	-	104580820,104581821	104581188,104581890	0.800000
testis_male_adult_37_years	chr20	1986193	1986194	1986193	-	High_confidence	7	7	9	0.402263	2.725481	chr20	1986107	1986312	SINE|MIR|MIR	-	chr20	1978816	1986156	STRG.272736.1	-	1978816,1982955,1985994	1980958,1983100,1986156	1.000000
testis_male_adult_37_years	chr2	86482599	86482617	86482616	+	RAMPAGE_only	3	3	9	0.402263	3.169925	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86441460	86492716	KDM3A|ENST00000409064.5	+	86441460,86442017,86449806,86451102,86455084,86456441,86456804,86456982,86464052,86466371,86470203,86474775,86477876,86478169,86478607,86480166,86481929,86482457,86483986,86484941,86485728,86489317,86489519,86490880,86491140,86492038	86441488,86442233,86449962,86451213,86455187,86456566,86456877,86457071,86464216,86466883,86470408,86474990,86478029,86478265,86478735,86480362,86482102,86482694,86484158,86485029,86485859,86489437,86489659,86491057,86491275,86492716	0.888889
testis_male_adult_37_years	chr7	3198269	3198301	3198300	-	High_confidence	5	5	15	0.670438	3.106891	chr7	3198204	3198321	LINE|L1|L1MDa	-	chr7	3196625	3198256	AC073316.2|ENST00000414126.1	-	3196625,3198012,3198194	3196930,3198063,3198256	0.800000
testis_male_adult_37_years	chrX	136421475	136421476	136421475	+	High_confidence	137	137	148	6.614992	4.738986	chrX	136421124	136421903	LTR|ERV1|LTR12	+	chrX	136421460	136469681	STRG.296834.1	+	136421460,136469192	136421906,136469681	0.891892
testis_male_adult_37_years	chr6	139677638	139677671	139677651	+	High_confidence	9	10	29	1.296181	4.042413	chr6	139677532	139677837	SINE|Alu|AluY	-	chr6	139677655	139678181	STRG.122010.1	+	139677655	139678181	0.655172
testis_male_adult_37_years	chrX	19349972	19350030	19350019	+	RAMPAGE_only	2	2	9	0.402263	2.725481	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19343967	19353327	PDHA1|ENST00000379805.3	+	19343967,19349311,19349936,19351280,19353081	19344094,19349371,19350110,19351407,19353327	0.555556
testis_male_adult_37_years	chr3	69999571	69999605	69999571	+	High_confidence	11	14	49	2.190099	5.262692	chr3	69999500	70000000	LTR|ERV1|LTR1A2	+	chr3	69999571	70014782	SAMMSON|ENST00000488861.6	+	69999571,70012356,70013519,70013793	69999620,70012598,70013672,70014782	0.612245
testis_male_adult_37_years	chr4	20697886	20697933	20697932	+	RAMPAGE_only	3	3	18	0.804526	3.807764	chr4	20697627	20697990	LTR|ERVL-MaLR|MLT1A0	-	chr4	20696281	20752907	PACRGL|ENST00000471979.6	+	20696281,20704465,20704659,20707802,20709682,20712787,20713431,20724807,20727284,20752564	20696513,20704533,20704814,20707870,20709773,20712922,20713539,20724888,20727397,20752907	0.777778
testis_male_adult_37_years	chr10	17385571	17385585	17385571	+	RAMPAGE_only	2	2	6	0.268175	2.584963	chr10	17385378	17385754	LTR|ERV1|LTR7	-	chr10	17386935	17408286	ST8SIA6-AS1|NR_034129.1	+	17386935,17399104,17407967	17387075,17399202,17408286	1.000000
testis_male_adult_37_years	chr8	70297104	70297122	70297114	-	RAMPAGE_only	4	5	14	0.625742	3.807355	chr8	70297092	70297231	LINE|L2|L2b	+	chr8	70112069	70402079	NCOA2|ENST00000518287.6	-	70112069,70123803,70124687,70126812,70128432,70128701,70131836,70138202,70141178,70148272,70155970,70159504,70162710,70163464,70166565,70170201,70174755,70213902,70216659,70296743,70401813	70113643,70124082,70124865,70127047,70128510,70128980,70132002,70138332,70141399,70148483,70157240,70159652,70162854,70163566,70166754,70170379,70174859,70214075,70216764,70296800,70402079	0.928571
testis_male_adult_37_years	chr6	24258264	24258265	24258264	-	RAMPAGE_only	38	40	53	2.368882	4.756169	chr6	24258054	24258584	LTR|ERV1|LTR12	-	chr6	24171755	24205303	DCDC2|ENST00000378450.6	-	24171755,24178329,24205001	24174834,24178632,24205303	0.811321
testis_male_adult_37_years	chr1	180509408	180509411	180509410	+	High_confidence	58	73	105	4.693069	4.967023	chr1	180508432	180509814	LTR|ERV1|LTR12C	+	chr1	180509367	180512890	STRG.15874.1	+	180509367	180512890	0.942857
testis_male_adult_37_years	chr3	130727288	130727299	130727298	-	RAMPAGE_only	4	4	11	0.491655	2.550341	chr3	130727224	130727522	SINE|Alu|AluYk4	-	chr3	130716416	130725958	PIK3R4|ENST00000507330.5	-	130716416,130718388,130723413,130725898	130716599,130718534,130723587,130725958	0.909091
testis_male_adult_37_years	chr6	1456560	1456561	1456560	-	High_confidence	30	30	31	1.385573	4.256565	chr6	1456249	1457532	LTR|ERV1|LTR12C	-	chr6	1455584	1456545	STRG.106509.1	-	1455584	1456545	0.903226
testis_male_adult_37_years	chr3	175124403	175124438	175124417	+	High_confidence	7	7	24	1.072701	4.262692	chr3	175124288	175124452	LTR|ERVL-MaLR|MLT1L	-	chr3	175124218	175125544	STRG.66422.1	+	175124218	175125544	0.583333
testis_male_adult_37_years	chr4	68350581	68350638	68350619	-	High_confidence	3	3	14	0.625742	3.180833	chr4	68350526	68350775	SINE|Alu|AluSc	-	chr4	68310386	68350106	YTHDC1|NM_133370.2	-	68310386,68316313,68318518,68318689,68318825,68320122,68322748,68324138,68330001,68330201,68332102,68333307,68337026,68337571,68338282,68349725	68314323,68316448,68318581,68318729,68318862,68320205,68322915,68324223,68330119,68330310,68332197,68333397,68337450,68337900,68338384,68350106	0.928571
testis_male_adult_37_years	chr13	79429451	79429477	79429451	-	High_confidence	8	8	18	0.804526	3.734522	chr13	79429281	79429764	LINE|L1|L1ME2z	-	chr13	79422711	79429463	STRG.217871.2	-	79422711,79423729,79428979,79429394	79422909,79423805,79429023,79429463	0.666667
testis_male_adult_37_years	chr15	78437560	78437625	78437560	+	High_confidence	2	2	15	0.670438	3.906891	chr15	78437296	78437621	LINE|L2|L2	-	chr15	78438175	78501456	IREB2|NM_004136.3	+	78438175,78439794,78462921,78465250,78466270,78470531,78471740,78473241,78476187,78478296,78483317,78484760,78485704,78487732,78488179,78488646,78490421,78490618,78493908,78494141,78497125,78498032	78438356,78439881,78463087,78465388,78466489,78470601,78471924,78473381,78476359,78478397,78483434,78484920,78485840,78487817,78488336,78488771,78490526,78490761,78494056,78494264,78497311,78501456	0.800000
testis_male_adult_37_years	chr3	155462171	155462189	155462188	+	High_confidence	15	15	41	1.832532	4.784184	chr3	155461924	155462306	LTR|ERVL|ERVL-B4-int	+	chr3	155462201	155486460	STRG.63900.1	+	155462201,155485397	155462416,155486460	0.853659
testis_male_adult_37_years	chr14	47626538	47626574	47626568	-	High_confidence	37	38	157	7.017255	6.414506	chr14	47626373	47628032	LTR|ERV1|LTR12C	+	chr14	46870937	47626525	MDGA2|ENST00000557238.5	-	46870937,46873432,46874044,46882043,46920011,46957373,47035010,47061248,47096853,47131713,47144077,47218020,47301410,47626338	46871960,46873591,46874200,46882221,46920160,46957643,47035278,47061578,47097123,47131846,47144274,47218195,47301550,47626525	0.528662
testis_male_adult_37_years	chr11	38337175	38337235	38337203	-	High_confidence	12	12	81	3.620367	5.108067	chr11	38337000	38337314	SINE|Alu|AluY	+	chr11	38170431	38337215	STRG.186481.1	-	38170431,38200934,38325174,38336836	38170591,38201048,38325269,38337215	0.938272
testis_male_adult_37_years	chr1	162497340	162497341	162497340	+	High_confidence	11	11	13	0.581047	3.251629	chr1	162496833	162497426	LTR|ERV1|MER4B	-	chr1	162497250	162529629	UHMK1|ENST00000545294.5	+	162497250,162499954,162500912,162503753,162512499,162512724,162518101,162522403	162497296,162500247,162501104,162503848,162512576,162512823,162518190,162529629	0.923077
testis_male_adult_37_years	chr15	45034803	45034837	45034834	-	High_confidence	3	4	11	0.491655	2.921928	chr15	45034651	45036266	LTR|ERV1|LTR12E	+	chr15	45032051	45035277	STRG.235204.1	-	45032051,45034545	45032521,45035277	0.818182
testis_male_adult_37_years	chr10	28282092	28282099	28282098	-	High_confidence	9	9	16	0.715134	3.750000	chr10	28281945	28282364	LTR|ERVL|LTR86A1	+	chr10	28050992	28282097	MPP7|NM_173496.4	-	28050992,28056479,28058494,28059649,28069771,28089670,28119650,28120193,28120593,28124030,28125009,28131559,28147482,28149981,28202152,28238567,28254773,28280099,28282009	28054244,28056623,28058603,28059743,28069852,28089841,28119715,28120390,28120668,28124116,28125091,28131691,28147563,28150059,28202271,28238735,28254876,28280140,28282097	0.687500
testis_male_adult_37_years	chr6	110330091	110330099	110330091	-	RAMPAGE_only	3	3	9	0.402263	2.750000	chr6	110329832	110331376	LINE|L1|L1MD2	+	chr6	110245927	110358272	METTL24|ENST00000338882.4	-	110245927,110298921,110315341,110322773,110357954	110246260,110299150,110315481,110322872,110358272	0.666667
testis_male_adult_37_years	chr13	52323831	52323876	52323850	-	RAMPAGE_only	23	24	110	4.916548	5.387778	chr13	52323775	52323855	SINE|tRNA|LFSINE_Vert	+	chr13	52167953	52325605	STRG.215363.1	-	52167953,52169986,52171157,52175638,52180581,52183975,52186682,52189638,52223238,52227004,52229325,52233063,52235219,52253744,52253936,52258528,52279840,52280651,52280861,52283237,52289821,52291506,52309195,52312649,52313931,52316345,52320549,52323279,52323829,52324065,52325539	52169304,52170056,52171248,52175776,52180654,52184114,52186823,52189914,52223331,52227096,52229431,52233144,52235281,52253833,52254018,52258590,52279905,52280715,52280961,52283357,52289983,52308299,52309249,52312703,52313959,52316399,52320606,52323388,52323914,52324167,52325605	0.900000
testis_male_adult_37_years	chr10	42777809	42777816	42777809	+	RAMPAGE_only	3	3	7	0.312871	2.807355	chr10	42777678	42778024	LINE|L1|L1ME2z	-	chr10	42782505	42834937	BMS1|NM_014753.3	+	42782505,42784361,42785481,42787167,42790322,42791626,42792492,42792956,42793851,42796473,42797421,42798467,42802136,42816598,42817317,42820235,42820507,42820933,42822061,42823117,42823608,42830260,42830865	42782830,42784570,42785672,42787247,42790511,42791769,42792614,42793144,42793991,42797231,42797523,42798625,42802218,42816672,42817494,42820424,42820688,42820992,42822184,42823265,42823784,42830422,42834937	0.571429
testis_male_adult_37_years	chr6	130978820	130978874	130978820	-	High_confidence	11	11	47	2.100707	5.099436	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.702128
testis_male_adult_37_years	chr13	42870849	42870873	42870849	-	High_confidence	6	6	16	0.715134	3.640224	chr13	42869731	42872703	LTR|ERV1|HERVH-int	-	chr13	42814159	42870943	STRG.213683.2	-	42814159,42870600	42814472,42870943	0.562500
testis_male_adult_37_years	chr2	115757401	115757424	115757423	-	RAMPAGE_only	34	34	124	5.542291	5.674489	chr2	115757273	115757645	LTR|ERVL-MaLR|THE1B	-	chr2	115737818	115741545	STRG.35216.1	-	115737818	115741545	0.709677
testis_male_adult_37_years	chr6	158810458	158810485	158810458	-	RAMPAGE_only	2	2	8	0.357567	3.000000	chr6	158810364	158810539	LINE|L2|L2c	+	chr6	158765740	158818227	EZR|ENST00000337147.11	-	158765740,158767260,158769325,158769783,158770763,158771243,158776407,158783519,158784643,158785308,158787107,158789287,158818081	158767078,158767512,158769418,158769944,158770894,158771407,158776504,158783666,158784727,158785583,158787203,158789371,158818227	1.000000
testis_male_adult_37_years	chr8	2726956	2726963	2726962	+	High_confidence	19	19	50	2.234795	5.043856	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2726975	2853287	STRG.142072.1	+	2726975,2804585,2834348,2834771,2852994	2727493,2804709,2834577,2834876,2853287	1.000000
testis_male_adult_37_years	chr7	112423378	112423401	112423400	+	High_confidence	26	26	53	2.368882	5.284340	chr7	112423337	112423544	SINE|MIR|MIRb	-	chr7	112423143	112475527	IFRD1|ENST00000005558.8	+	112423143,112450507,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112423432,112450782,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112475527	0.867925
testis_male_adult_37_years	chr2	168821828	168821836	168821828	+	RAMPAGE_only	5	5	14	0.625742	3.180833	chr2	168821437	168821880	LINE|L2|L2a	-	chr2	168811333	168851182	NOSTRIN|ENST00000447264.2	+	168811333,168811566,168824633,168828157,168828419,168831471,168834226,168842991,168851083	168811425,168811652,168824717,168828220,168828501,168831534,168834325,168843117,168851182	0.928571
testis_male_adult_37_years	chr5	80081806	80081832	80081818	+	High_confidence	3	3	11	0.491655	2.913977	chr5	80081665	80081956	DNA|hAT-Charlie|MER20B	-	chr5	80082003	80083188	THBS4|ENST00000511888.1	+	80082003,80082405,80083079	80082312,80082545,80083188	0.909091
testis_male_adult_37_years	chr16	12372709	12372714	12372709	+	High_confidence	5	5	10	0.446959	3.169925	chr16	12372669	12372779	LINE|L2|L2b	-	chr16	12372811	12373899	AC007598.1|ENST00000564577.1	+	12372811,12373668	12372909,12373899	0.700000
testis_male_adult_37_years	chr7	11567356	11567404	11567356	+	High_confidence	6	6	17	0.759830	3.263933	chr7	11567110	11567490	LTR|ERVL-MaLR|THE1C	-	chr7	11567390	11587587	STRG.126357.1	+	11567390,11583828,11587524	11567661,11583979,11587587	0.823529
testis_male_adult_37_years	chr8	30653972	30653995	30653972	-	RAMPAGE_only	3	3	12	0.536351	3.251629	chr8	30653838	30654118	SINE|Alu|AluJb	+	chr8	30607103	30657005	GTF2E2|ENST00000518599.5	-	30607103,30612298,30614607,30635031,30653432,30656868	30607150,30612481,30614715,30635123,30653602,30657005	0.750000
testis_male_adult_37_years	chr16	71326144	71326164	71326144	+	High_confidence	5	5	18	0.804526	3.614369	chr16	71326109	71326321	SINE|MIR|MIRb	-	chr16	71326167	71327072	STRG.246899.1	+	71326167,71326660,71326816	71326229,71326721,71327072	0.555556
testis_male_adult_37_years	chr15	74053445	74053461	74053445	+	High_confidence	241	258	346	15.464778	6.024485	chr15	74052365	74053880	LTR|ERV1|LTR12C	+	chr15	74053455	74054035	STRG.237778.1	+	74053455	74054035	0.965318
testis_male_adult_37_years	chrY	3776225	3776226	3776225	+	RAMPAGE_only	29	30	37	1.653748	4.445544	chrY	3775922	3776417	LTR|ERVL-MaLR|MLT1H	+	chrY	3786270	3805949	STRG.298449.1	+	3786270,3800650,3803828,3804384	3786390,3800746,3803952,3805949	0.945946
testis_male_adult_37_years	chr12	75025963	75025985	75025984	+	High_confidence	12	12	37	1.653748	4.627987	chr12	75025941	75026019	LINE|L2|L2b	-	chr12	75025986	75043370	AC073525.1|ENST00000547040.1	+	75025986,75040957	75026204,75043370	0.864865
testis_male_adult_37_years	chr2	121902669	121902690	121902689	+	High_confidence	7	7	14	0.625742	3.324863	chr2	121902629	121902713	LINE|CR1|L3	-	chr2	121902275	121964119	STRG.35665.2	+	121902275,121944333,121962461	121902989,121962425,121964119	0.785714
testis_male_adult_37_years	chr9	98943562	98943578	98943575	+	High_confidence	9	10	25	1.117397	4.453661	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
testis_male_adult_37_years	chr14	34536109	34536131	34536109	-	High_confidence	10	11	19	0.849222	4.037401	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.789474
testis_male_adult_37_years	chr4	107286580	107286632	107286631	+	RAMPAGE_only	3	3	12	0.536351	3.418296	chr4	107286486	107286642	SINE|MIR|MIR	-	chr4	107258699	107301870	AC104663.1|ENST00000508555.1	+	107258699,107301488	107258874,107301870	0.833333
testis_male_adult_37_years	chrX	98573793	98573834	98573814	+	High_confidence	8	8	24	1.072701	4.334963	chrX	98573437	98574092	LTR|ERV1|LTR49	+	chrX	98573858	98865564	AL157778.1|ENST00000626665.3	+	98573858,98578985,98644527,98731530,98785026,98864610	98573932,98579074,98644574,98731577,98785124,98865564	0.500000
testis_male_adult_37_years	chr7	96358366	96358418	96358417	+	High_confidence	9	9	33	1.474964	4.513795	chr7	96358348	96359121	LTR|ERV1|LTR17	-	chr7	96358297	96359808	STRG.134669.1	+	96358297	96359808	0.727273
testis_male_adult_37_years	chr22	28769341	28769356	28769352	+	High_confidence	21	21	47	2.100707	4.692263	chr22	28769069	28769776	LTR|ERV1|LTR12_	+	chr22	28769281	28770399	STRG.284435.1	+	28769281	28770399	0.957447
testis_male_adult_37_years	chr6	147660703	147660705	147660704	+	High_confidence	12	15	21	0.938614	3.787144	chr6	147660510	147660901	LTR|ERVL-MaLR|MSTA	+	chr6	147660736	147737556	AL033504.1|ENST00000432506.5	+	147660736,147733728,147737316	147660819,147733811,147737556	0.571429
testis_male_adult_37_years	chr3	113800922	113800939	113800938	+	High_confidence	51	53	91	4.067326	5.884862	chr3	113800872	113801154	SINE|Alu|AluJr	+	chr3	113801138	113809469	ATP6V1A|ENST00000461496.1	+	113801138,113802757,113803301,113803582,113805353,113809334	113801167,113802825,113803344,113803677,113805525,113809469	0.725275
testis_male_adult_37_years	chr11	61792097	61792117	61792116	-	High_confidence	3	3	12	0.536351	3.418296	chr11	61792006	61792276	LINE|L2|L2c	-	chr11	61789130	61792594	STRG.187985.6	-	61789130,61789784,61790492	61789235,61789921,61792594	1.000000
testis_male_adult_37_years	chr13	24580610	24580623	24580622	+	High_confidence	6	6	14	0.625742	3.807355	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.785714
testis_male_adult_37_years	chr4	93203839	93203923	93203872	+	High_confidence	27	27	123	5.497595	5.947253	chr4	93203798	93204057	LTR|ERVL-MaLR|MLT1J2	-	chr4	93203948	93238421	GRID2|ENST00000512631.1	+	93203948,93207403,93216737,93224613,93238370	93204086,93207457,93216911,93224775,93238421	0.804878
testis_male_adult_37_years	chr2	21101715	21101731	21101730	+	RAMPAGE_only	3	3	11	0.491655	2.921928	chr2	21101472	21102081	LTR|ERV1|LTR12C	-	chr2	21123916	21143272	TDRD15|ENST00000405799.1	+	21123916,21127600,21134761,21137464	21124046,21127711,21134847,21143272	0.818182
testis_male_adult_37_years	chr5	139364674	139364720	139364719	+	RAMPAGE_only	3	3	20	0.893918	3.721928	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.950000
testis_male_adult_37_years	chr1	89128131	89128139	89128138	+	High_confidence	9	10	21	0.938614	3.975418	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89127843	89179758	STRG.9388.1	+	89127843,89148590,89149331,89179318	89128644,89148680,89149546,89179758	1.000000
testis_male_adult_37_years	chr4	136929930	136929934	136929930	+	High_confidence	23	23	39	1.743140	4.756619	chr4	136928824	136930243	LTR|ERV1|LTR12C	+	chr4	136929927	136939032	STRG.82534.1	+	136929927,136938776	136930321,136939032	0.717949
testis_male_adult_37_years	chr3	51996235	51996263	51996235	-	High_confidence	2	2	10	0.446959	3.321928	chr3	51996161	51996465	SINE|Alu|AluSq4	-	chr3	51993599	51995942	RPL29|ENST00000294189.10	-	51993599,51995041,51995424,51995856	51994126,51995106,51995469,51995942	1.000000
testis_male_adult_37_years	chr11	64226158	64226201	64226158	-	High_confidence	56	58	334	14.928428	7.031699	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.982036
testis_male_adult_37_years	chr10	86499732	86499777	86499732	-	RAMPAGE_only	3	3	19	0.849222	3.614369	chr10	86499367	86499686	DNA|TcMar-Tigger|MER44A	-	chr10	86435256	86521768	WAPL|ENST00000618527.4	-	86435256,86437919,86443274,86446241,86451966,86453219,86453655,86458988,86460398,86461175,86467278,86470991,86472207,86472611,86473877,86497200,86499717,86517570,86521364,86521674	86437608,86438015,86443363,86446449,86452131,86453335,86453831,86459065,86460496,86461287,86467506,86471103,86472344,86472764,86473973,86497319,86500743,86518091,86521541,86521768	0.947368
testis_male_adult_37_years	chr8	86368952	86368960	86368952	+	RAMPAGE_only	4	5	11	0.491655	2.550341	chr8	86368776	86369052	LINE|L2|L2c	+	chr8	86374040	86467476	WWP1|ENST00000265428.4	+	86374040,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	1.000000
testis_male_adult_37_years	chr12	118139096	118139097	118139096	+	High_confidence	14	14	14	0.625742	3.664498	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.928571
testis_male_adult_37_years	chr9	114177931	114177935	114177931	+	RAMPAGE_only	5	5	14	0.625742	3.392747	chr9	114177859	114178092	LINE|L2|L2c	-	chr9	114168607	114311548	COL27A1|ENST00000494090.6	+	114168607,114178290,114183021,114195958,114205101,114205758,114206251,114209674,114210981,114219790,114222222,114231078,114231821,114235598,114236980,114237661,114240219,114240433,114242186,114243506,114245865,114250614,114252592,114252878,114258540,114264354,114264923,114265065,114265421,114266564,114267503,114269240,114270727,114275660,114282276,114282456,114283708,114284723,114288454,114288701,114288913,114289241,114290057,114290223,114290809,114292102,114300069,114300624,114301071,114301283,114301444,114301681,114302081,114304607,114306519,114307668,114309259,114310548	114169463,114178344,114183075,114196012,114205146,114205812,114206296,114209728,114211026,114219844,114222267,114231132,114231858,114235652,114237034,114237715,114240273,114240487,114242231,114243560,114245910,114250668,114252653,114252932,114258594,114264408,114264968,114265110,114265475,114266618,114267557,114269294,114270781,114275768,114282330,114282564,114283762,114284777,114288511,114288755,114288967,114289295,114290111,114290331,114290917,114292210,114300123,114300687,114301125,114301319,114301462,114301717,114302108,114304673,114306688,114307778,114309478,114311548	0.857143
testis_male_adult_37_years	chr3	142019938	142019939	142019938	-	RAMPAGE_only	6	6	7	0.312871	2.584963	chr3	142019813	142019903	LINE|L1|L1MD	-	chr3	141959799	142028597	TFDP2|ENST00000467667.5	-	141959799,141963811,141970072,141974047,141978519,141993537,141995019,142005440,142028578	141959840,141963963,141970141,141974194,141978682,141993585,141995141,142005544,142028597	0.857143
testis_male_adult_37_years	chr19	48637367	48637379	48637367	-	High_confidence	44	44	100	4.469589	5.414758	chr19	48637310	48637367	LINE|L1|X9_LINE	+	chr19	48633085	48637363	DBP|ENST00000601104.1	-	48633085,48635579,48636855	48633655,48635990,48637363	0.890000
testis_male_adult_37_years	chr6	17598927	17598962	17598927	-	RAMPAGE_only	3	4	22	0.983310	3.332095	chr6	17598903	17599192	SINE|Alu|AluY	-	chr6	17585246	17600248	STRG.109113.2	-	17585246,17585716,17587675,17589803,17591190,17598752	17585393,17585887,17588050,17589955,17591258,17600248	0.909091
testis_male_adult_37_years	chrX	127662529	127662530	127662529	-	High_confidence	590	593	629	28.113716	4.983003	chrX	127662012	127663525	LTR|ERV1|LTR12C	-	chrX	127660630	127662530	AL591643.1|ENST00000561587.1	-	127660630	127662530	0.952305
testis_male_adult_37_years	chr15	25944237	25944261	25944237	+	High_confidence	2	2	7	0.312871	2.521641	chr15	25943563	25944713	LTR|ERV1|LTR12D	-	chr15	25944231	25945062	STRG.232235.1	+	25944231	25945062	0.857143
testis_male_adult_37_years	chr6	143562018	143562052	143562018	-	High_confidence	65	67	105	4.693069	5.675407	chr6	143561925	143562175	LINE|L2|L2c	+	chr6	143554324	143562031	PHACTR2-AS1|ENST00000450575.1	-	143554324,143557530,143557998,143561166,143561884	143555230,143557741,143558131,143561468,143562031	0.609524
testis_male_adult_37_years	chr5	149887616	149887618	149887616	-	High_confidence	26	35	50	2.234795	5.093661	chr5	149887556	149888026	LTR|ERV1|LTR46	+	chr5	149857994	149887744	STRG.103230.2	-	149857994,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149887536	149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149887744	0.900000
testis_male_adult_37_years	chr18	65606078	65606081	65606078	+	High_confidence	110	110	189	8.447524	4.481703	chr18	65605071	65606518	LTR|ERV1|LTR12C	+	chr18	65606089	65652053	AC090358.1|ENST00000579862.1	+	65606089,65606589,65642657,65651884	65606482,65606767,65642769,65652053	0.952381
testis_male_adult_37_years	chr16	86345629	86345654	86345652	-	High_confidence	61	89	165	7.374822	6.514767	chr16	86345432	86345869	LINE|L2|L2a	+	chr16	86338133	86345644	STRG.249063.7	-	86338133,86338749,86344598	86338661,86338832,86345644	0.733333
testis_male_adult_37_years	chr1	184539797	184539844	184539797	-	High_confidence	5	6	19	0.849222	3.826875	chr1	184539688	184540056	LTR|ERVL-MaLR|MLT1I	+	chr1	184539203	184539799	STRG.16006.1	-	184539203	184539799	0.894737
testis_male_adult_37_years	chr15	40508005	40508024	40508005	+	High_confidence	11	11	23	1.028006	4.262692	chr15	40507827	40508150	LINE|L1|L1ME2	+	chr15	40508023	40553250	AC091045.1|ENST00000561039.1	+	40508023,40508331,40552842	40508067,40508444,40553250	0.739130
testis_male_adult_37_years	chr8	102285757	102285759	102285757	-	RAMPAGE_only	5	8	11	0.491655	2.921928	chr8	102285712	102285783	DNA|hAT-Ac|OldhAT1	-	chr8	102252272	102412689	UBR5|NM_001282873.1	-	102252272,102257631,102258984,102261145,102261914,102264473,102265099,102266946,102268977,102270038,102271133,102272528,102275520,102275707,102276971,102278825,102279035,102280393,102281288,102285126,102285512,102286359,102287432,102288154,102289452,102293604,102293954,102294981,102295203,102295413,102295635,102296892,102297457,102298391,102298847,102299451,102299999,102304042,102305084,102311298,102311734,102312133,102312341,102313803,102314743,102323310,102326545,102327741,102329089,102329282,102342472,102345395,102346235,102346902,102360070,102360588,102361124,102361581,102412172	102254514,102257717,102259129,102261259,102262070,102264558,102265275,102267007,102269108,102270183,102271245,102272772,102275619,102275828,102277192,102278939,102279208,102280467,102281519,102285338,102285781,102286617,102287564,102288266,102289576,102293844,102294115,102295111,102295330,102295532,102295782,102296984,102297606,102298489,102298971,102299547,102300151,102304169,102305295,102311496,102311889,102312245,102312485,102313916,102314853,102323495,102326663,102327896,102329200,102329399,102342684,102345545,102346395,102347092,102360190,102360665,102361206,102361626,102412689	0.727273
testis_male_adult_37_years	chr1	79270211	79270234	79270211	+	High_confidence	4	6	21	0.938614	4.021928	chr1	79269498	79270456	LTR|ERV1|LTR12C	+	chr1	79269962	79271445	STRG.8018.1	+	79269962	79271445	0.904762
testis_male_adult_37_years	chr10	129380781	129380826	129380814	-	High_confidence	14	16	76	3.396888	5.317911	chr10	129380797	129381196	LTR|ERVL-MaLR|MLT1A1	+	chr10	129372193	129380753	AL359508.1|ENST00000647791.1	-	129372193,129378747,129380642	129373124,129378972,129380753	0.776316
testis_male_adult_37_years	chr4	55486421	55486474	55486455	-	RAMPAGE_only	3	3	15	0.670438	3.521641	chr4	55486051	55487998	LINE|L1|HAL1	-	chr4	55427902	55510027	CLOCK|ENST00000309964.8	-	55427902,55438281,55442431,55443686,55444632,55448778,55449395,55450090,55453053,55453676,55455896,55456217,55458891,55459147,55463684,55470716,55475962,55478814,55479639,55482738,55489373,55509911	55435594,55438537,55442634,55443896,55444785,55448868,55449496,55450232,55453129,55453824,55456003,55456300,55459010,55459261,55463805,55470806,55476054,55478963,55479699,55482828,55489465,55510027	0.866667
testis_male_adult_37_years	chr2	309330	309351	309330	-	High_confidence	2	2	8	0.357567	2.500000	chr2	309218	309376	LTR|ERVL-MaLR|MLT1J-int	+	chr2	306058	309379	AC079779.3|ENST00000416685.1	-	306058,308971	306240,309379	0.625000
testis_male_adult_37_years	chr21	40728058	40728084	40728071	-	High_confidence	21	23	106	4.737765	5.964445	chr21	40727476	40728316	LINE|L2|L2a	+	chr21	40085491	40728098	STRG.282000.1	-	40085491,40087169,40093720,40124194,40133853,40142557,40144490,40167217,40178926,40187130,40187890,40189041,40276096,40296054,40312080,40338100,40339118,40347669,40353464,40369098,40692809,40708453,40728004	40085765,40087287,40093874,40124328,40134009,40142704,40144731,40167288,40179094,40187259,40187987,40189238,40276270,40296174,40312359,40338376,40339415,40347945,40353743,40369245,40692956,40708771,40728098	0.773585
testis_male_adult_37_years	chr2	10324346	10324369	10324346	+	High_confidence	5	8	16	0.715134	3.773557	chr2	10324377	10324492	SINE|MIR|MIRb	+	chr2	10324346	10427352	HPCAL1|ENST00000419810.6	+	10324346,10354215,10396834,10408561,10419733,10422982,10426219,10426723	10324396,10354381,10396920,10408734,10420135,10425981,10426495,10427352	0.500000
testis_male_adult_37_years	chr4	118503778	118503800	118503778	+	RAMPAGE_only	7	7	15	0.670438	3.373557	chr4	118503559	118503859	SINE|Alu|AluY	+	chr4	118506562	118515331	STRG.80517.1	+	118506562,118509903,118513536	118506952,118510030,118515331	0.866667
testis_male_adult_37_years	chr17	63828005	63828006	63828005	+	High_confidence	4	4	7	0.312871	2.521641	chr17	63827986	63828047	SINE|MIR|MIRb	-	chr17	63827877	63831986	PSMC5|ENST00000581882.5	+	63827877,63829493,63829851,63830132,63830270,63830808,63831035,63831326,63831505,63831723,63831915	63828209,63829563,63829949,63830189,63830501,63830935,63831226,63831425,63831616,63831810,63831986	1.000000
testis_male_adult_37_years	chr3	48607669	48607681	48607680	-	RAMPAGE_only	8	11	22	0.983310	4.011365	chr3	48607554	48607722	SINE|Alu|AluJo	-	chr3	48599053	48609626	UQCRC1|ENST00000415995.5	-	48599053,48599634,48600062,48600481,48600679,48600974,48601351,48603563,48604232,48604650,48605769,48609546	48599192,48599710,48600151,48600567,48600840,48601118,48601467,48603643,48604431,48604780,48605856,48609626	0.727273
testis_male_adult_37_years	chr1	44945469	44945470	44945469	-	RAMPAGE_only	5	5	7	0.312871	2.807355	chr1	44945274	44945568	SINE|Alu|AluY	+	chr1	44926627	44986586	EIF2B3|ENST00000477953.5	-	44926627,44937256,44941505,44969977,44978314,44981020,44986492	44926739,44937348,44941665,44970044,44978460,44981177,44986586	0.571429
testis_male_adult_37_years	chr12	129208423	129208427	129208423	+	High_confidence	3	3	6	0.268175	2.584963	chr12	129208448	129208541	LINE|L2|L2a	+	chr12	129208441	129212634	STRG.211112.1	+	129208441,129209557,129210851,129211962	129208953,129210266,129211048,129212634	1.000000
testis_male_adult_37_years	chr19	20936611	20936638	20936611	+	High_confidence	19	24	83	3.709759	5.692836	chr19	20936356	20936935	LTR|ERV1|LTR10C	-	chr19	20936605	20949364	ZNF85|ENST00000595742.1	+	20936605,20946299,20948743	20936667,20946389,20949364	0.903614
testis_male_adult_37_years	chr6	160031718	160031735	160031718	+	High_confidence	2	2	6	0.268175	2.584963	chr6	160031733	160031797	LINE|L2|L2a	+	chr6	160032431	160036725	IGF2R|ENST00000649737.1	+	160032431,160032941,160034418	160032713,160033107,160036725	0.500000
testis_male_adult_37_years	chr1	109264584	109264616	109264584	+	High_confidence	2	2	12	0.536351	3.084963	chr1	109264632	109264745	SINE|MIR|MIR3	+	chr1	109265268	109266439	CELSR2|ENST00000459940.1	+	109265268,109265734,109266104	109265311,109265918,109266439	0.833333
testis_male_adult_37_years	chr11	82138215	82138239	82138215	-	High_confidence	2	2	6	0.268175	2.584963	chr11	82138043	82138397	LTR|ERVL-MaLR|MLT1A0	-	chr11	82015540	82138219	STRG.190220.1	-	82015540,82099973,82138118	82015734,82100207,82138219	0.833333
testis_male_adult_37_years	chr9	99937908	99937932	99937908	+	High_confidence	2	2	9	0.402263	2.750000	chr9	99936538	99938302	LINE|L1|L1ME2z	-	chr9	99937907	99968612	STX17|ENST00000525847.1	+	99937907,99951059,99959916,99960104,99967652,99968433	99938076,99951285,99960032,99960155,99967739,99968612	0.888889
testis_male_adult_37_years	chr4	4611618	4611666	4611665	+	RAMPAGE_only	11	11	48	2.145403	5.045301	chr4	4611518	4611692	LINE|L2|L2b	+	chr4	4649423	4708600	STX18-AS1|ENST00000608184.1	+	4649423,4705672	4649542,4708600	0.500000
testis_male_adult_37_years	chr10	65811647	65811680	65811647	-	High_confidence	97	98	170	7.598302	5.111187	chr10	65811231	65812586	LTR|ERV1|LTR12E	-	chr10	65729517	65811944	STRG.175126.1	-	65729517,65745515,65786836,65811347	65729728,65745617,65786976,65811944	0.864706
testis_male_adult_37_years	chr8	55058098	55058099	55058098	+	High_confidence	35	42	47	2.100707	4.795089	chr8	55057857	55058414	LTR|ERV1|LTR12_	+	chr8	55058292	55058950	STRG.146739.1	+	55058292	55058950	0.808511
testis_male_adult_37_years	chr14	23093716	23093744	23093743	-	RAMPAGE_only	9	9	45	2.011315	5.036616	chr14	23093682	23093875	SINE|MIR|MIRc	-	chr14	23058566	23095153	ACIN1|ENST00000605057.5	-	23058566,23061083,23061297,23062167,23062415,23062928,23063435,23064104,23064354,23065965,23069475,23078150,23078819,23079546,23081747,23089981,23090521,23093478,23094974	23059474,23061184,23061622,23062275,23062523,23063074,23063577,23064257,23064488,23066008,23069617,23078266,23079038,23080809,23081836,23090101,23090633,23093544,23095153	0.911111
testis_male_adult_37_years	chr12	85026462	85026499	85026462	+	RAMPAGE_only	3	3	11	0.491655	3.321928	chr12	85026445	85026532	LTR|Gypsy|MamGypLTR1b	+	chr12	85036313	85124858	LRRIQ1|ENST00000525971.6	+	85036313,85038152,85040489,85044717,85046019,85047246,85052176,85055546,85065261,85066747,85072906,85098354,85098866,85104003,85106521,85121696,85124069	85036407,85038308,85040601,85044809,85046137,85047470,85052251,85057184,85065414,85066898,85073098,85098548,85098994,85104077,85106615,85121876,85124858	0.636364
testis_male_adult_37_years	chr1	159005961	159005972	159005971	+	High_confidence	9	10	18	0.804526	3.683542	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.944444
testis_male_adult_37_years	chr14	70965371	70965392	70965379	+	High_confidence	7	7	29	1.296181	4.254525	chr14	70965381	70965682	SINE|Alu|AluSc8	+	chr14	70965369	70977151	PCNX1|ENST00000553428.2	+	70965369,70968197,70969020,70969858,70976941	70965432,70968243,70969110,70969999,70977151	0.551724
testis_male_adult_37_years	chr19	39354015	39354047	39354015	+	High_confidence	2	3	12	0.536351	3.095795	chr19	39353999	39354088	DNA|hAT-Charlie|MER117	-	chr19	39354003	39370115	SAMD4B|ENST00000599712.1	+	39354003,39356688,39369654	39354066,39357089,39370115	0.916667
testis_male_adult_37_years	chr15	33018810	33018836	33018835	-	RAMPAGE_only	2	2	6	0.268175	2.584963	chr15	33018639	33020029	LTR|ERV1|LTR12C	-	chr15	32765545	33067884	FMN1|ENST00000334528.13	-	32765545,32776834,32798803,32804280,32857014,32888171,32898833,32899978,32901910,32908489,32910473,32926173,32964106,32968713,33008013,33064956,33066510	32774354,32776919,32798953,32804332,32857107,32888292,32898893,32900125,32902040,32908578,32910535,32926261,32964257,32969477,33008075,33065074,33067884	0.666667
testis_male_adult_37_years	chr9	21959872	21959873	21959872	+	High_confidence	652	652	675	30.169727	4.512435	chr9	21959075	21960297	LTR|ERV1|LTR12C	+	chr9	21959854	21960653	STRG.158287.1	+	21959854	21960653	0.964444
testis_male_adult_37_years	chr15	70753181	70753182	70753181	-	RAMPAGE_only	7	7	7	0.312871	2.807355	chr15	70753130	70753317	LINE|L1|L1M5	+	chr15	70654553	70763511	UACA|NM_018003.2	-	70654553,70660150,70664661,70666723,70671038,70671964,70676492,70677107,70678098,70679607,70682757,70684264,70687539,70687749,70690453,70691298,70695016,70699526,70763329	70657127,70660216,70664814,70669462,70671091,70672001,70676591,70677140,70678206,70679676,70682795,70684446,70687646,70687820,70690511,70691363,70695105,70699660,70763511	0.857143
testis_male_adult_37_years	chr5	96934230	96934231	96934230	+	RAMPAGE_only	19	21	28	1.251485	4.363713	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.500000
testis_male_adult_37_years	chr13	60144647	60144664	60144647	+	High_confidence	79	81	211	9.430833	6.272796	chr13	60144418	60144964	LTR|ERVL-MaLR|MLT1O	+	chr13	60144697	60153505	DIAPH3-AS2|NR_046540.1	+	60144697,60147254,60153395	60144863,60147345,60153505	0.677725
testis_male_adult_37_years	chr9	94204539	94204566	94204565	-	High_confidence	7	7	15	0.670438	3.906891	chr9	94204504	94205008	LTR|ERV1|LTR12F	+	chr9	94176568	94204566	MIRLET7DHG|NR_046165.1	-	94176568,94199197,94204492	94177731,94199251,94204566	0.666667
testis_male_adult_37_years	chr1	167968437	167968472	167968471	+	High_confidence	38	41	210	9.386137	5.414230	chr1	167968140	167968902	LTR|ERVL|LTR41	-	chr1	167968489	167991339	DCAF6|ENST00000491067.1	+	167968489,167969203,167974829,167987494,167991203	167968533,167969259,167975015,167987608,167991339	0.861905
testis_male_adult_37_years	chr9	84467904	84467939	84467904	+	RAMPAGE_only	7	7	18	0.804526	3.292770	chr9	84467869	84468227	LTR|ERVL-MaLR|MLT1A0	+	chr9	84316513	84657077	AL157886.1|ENST00000650453.1	+	84316513,84497468,84521061,84583196,84611636,84611834,84655213	84317049,84497746,84521225,84583283,84611749,84611997,84657077	0.611111
testis_male_adult_37_years	chr12	72255585	72255679	72255631	-	RAMPAGE_only	22	22	134	5.989249	5.921745	chr12	72255193	72255834	LTR|ERVL|MER70B	-	chr12	72253507	72258240	TRHDE-AS1|ENST00000549957.1	-	72253507	72258240	0.835821
testis_male_adult_37_years	chr17	47056716	47056754	47056725	-	RAMPAGE_only	5	5	35	1.564356	4.337175	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.885714
testis_male_adult_37_years	chr15	51303080	51303137	51303080	-	High_confidence	60	61	227	10.145967	6.530451	chr15	51303071	51303342	DNA|hAT-Tip100|MamTip2	-	chr15	51258735	51303103	STRG.235576.2	-	51258735	51303103	0.986784
testis_male_adult_37_years	chr19	31167479	31167508	31167501	+	High_confidence	16	17	42	1.877227	4.884184	chr19	31167341	31167512	SINE|MIR|MIR3	-	chr19	31167515	31207663	LINC01791|ENST00000589511.1	+	31167515,31167684,31195589,31204745,31207498	31167589,31167833,31195703,31204920,31207663	0.547619
testis_male_adult_37_years	chr3	180870964	180870999	180870994	-	High_confidence	4	4	18	0.804526	3.852169	chr3	180870990	180871140	LTR|ERVL-MaLR|MLT1K	-	chr3	180661871	180870933	CCDC39|ENST00000471307.6	-	180661871,180663866,180748245,180751347,180781983,180847506,180870799	180662007,180663986,180748316,180751410,180782124,180847624,180870933	0.555556
testis_male_adult_37_years	chr3	197916379	197916392	197916379	-	High_confidence	58	59	105	4.693069	5.781079	chr3	197916298	197916573	SINE|Alu|AluJb	-	chr3	197913350	197916420	STRG.68877.9	-	197913350,197916171	197914042,197916420	0.847619
testis_male_adult_37_years	chr3	183163832	183163841	183163832	-	High_confidence	3	3	9	0.402263	2.947703	chr3	183163785	183163921	SINE|MIR|MIRc	+	chr3	183132136	183163829	STRG.67560.1	-	183132136,183135716,183140537,183152374,183153681,183162606,183163619	183132956,183135887,183140595,183152503,183154391,183162730,183163829	1.000000
testis_male_adult_37_years	chr17	34126166	34126185	34126184	-	RAMPAGE_only	13	13	25	1.117397	4.213661	chr17	34126086	34126329	LTR|ERVL-MaLR|MLT1J2	+	chr17	34078629	34095556	STRG.252801.3	-	34078629,34089115	34082901,34095556	0.520000
testis_male_adult_37_years	chr15	29686769	29686774	29686769	+	High_confidence	19	21	31	1.385573	4.506891	chr15	29686408	29686972	LTR|ERV1|LTR12F	+	chr15	29686776	29687795	STRG.233319.1	+	29686776	29687795	0.935484
testis_male_adult_37_years	chr9	81977088	81977104	81977093	-	High_confidence	23	23	64	2.860537	5.343320	chr9	81976760	81977074	SINE|Alu|AluY	-	chr9	81930225	81977089	AL158154.2|ENST00000585776.5	-	81930225,81946389,81967535,81973940,81976607	81931394,81946486,81967688,81974247,81977089	0.765625
testis_male_adult_37_years	chr12	85053819	85053841	85053840	+	RAMPAGE_only	12	13	42	1.877227	5.106603	chr12	85053702	85053922	SINE|Alu|AluY	-	chr12	85036370	85245105	LRRIQ1|ENST00000393217.6	+	85036370,85038152,85040489,85044717,85046019,85047246,85052176,85055546,85065261,85066747,85072906,85098354,85098866,85104003,85106521,85121696,85124069,85127831,85137849,85152279,85153023,85153662,85154011,85160612,85229516,85232695,85244788	85036407,85038308,85040601,85044809,85046137,85047470,85052251,85057184,85065414,85066898,85073098,85098548,85098994,85104077,85106615,85121876,85124519,85128033,85137969,85152369,85153145,85153758,85154094,85160714,85229649,85232756,85245105	0.857143
testis_male_adult_37_years	chr3	107716401	107716425	107716424	+	High_confidence	3	3	11	0.491655	3.027169	chr3	107716216	107716424	LINE|L2|L2c	-	chr3	107716458	107728936	BBX|ENST00000497629.1	+	107716458,107728764	107716849,107728936	0.909091
testis_male_adult_37_years	chr5	80083658	80083665	80083658	-	High_confidence	5	5	15	0.670438	3.521641	chr5	80083549	80083816	LINE|L2|L2c	+	chr5	80066348	80083654	CTD-2201I18.1|ENST00000514042.1	-	80066348,80068513,80071731,80072085,80072507,80080102,80082359,80083499	80067881,80068774,80071891,80072223,80072665,80080224,80082537,80083654	0.733333
testis_male_adult_37_years	chr5	143054199	143054200	143054199	+	High_confidence	7	7	8	0.357567	2.521641	chr5	143053748	143054428	LINE|L1|L1ME4c	-	chr5	143054438	143223194	ARHGAP26|ENST00000418236.5	+	143054438,143056027,143057641,143120987,143133966,143147230,143213996,143222357	143054526,143056086,143057747,143121147,143134105,143147381,143214088,143223194	0.875000
testis_male_adult_37_years	chr13	51423018	51423085	51423018	-	RAMPAGE_only	2	2	15	0.670438	3.906891	chr13	51422945	51423100	LINE|L2|L2c	+	chr13	51409306	51452650	STRG.214985.12	-	51409306,51430293,51451024,51451977,51452414	51423090,51430383,51451174,51452055,51452650	0.933333
testis_male_adult_37_years	chr11	73965197	73965241	73965235	+	High_confidence	10	10	32	1.430269	4.027518	chr11	73965174	73965267	LINE|CR1|L3	-	chr11	73965235	73970366	DNAJB13|ENST00000543947.1	+	73965235,73967938,73968255,73969245,73969960,73970282	73966251,73968162,73968458,73969322,73970135,73970366	1.000000
testis_male_adult_37_years	chr1	15599648	15599657	15599648	-	RAMPAGE_only	18	19	36	1.609052	4.537845	chr1	15599604	15599866	DNA|hAT-Charlie|MER1B	-	chr1	15586135	15603626	AL121992.1|ENST00000428945.1	-	15586135,15603088	15588442,15603626	1.000000
testis_male_adult_37_years	chr3	195894732	195894740	195894732	-	High_confidence	7	7	12	0.536351	2.913977	chr3	195894426	195894688	SINE|Alu|AluSx1	-	chr3	195884974	195894730	TNK2|ENST00000433111.1	-	195884974,195886976,195888425,195891911,195894315,195894605	195885033,195887047,195888606,195892007,195894363,195894730	0.750000
testis_male_adult_37_years	chr12	107736599	107736614	107736613	+	High_confidence	9	9	32	1.430269	4.321627	chr12	107736110	107737101	LINE|L2|L2a	-	chr12	107736588	107759968	AC007622.2|ENST00000546714.1	+	107736588,107738021,107739126,107758274,107759771	107736947,107738489,107739664,107758392,107759968	0.687500
testis_male_adult_37_years	chr18	3546297	3546320	3546297	-	RAMPAGE_only	3	3	17	0.759830	4.000000	chr18	3546141	3546431	SINE|Alu|AluJb	+	chr18	3502136	3845296	DLGAP1|ENST00000400145.6	-	3502136,3508569,3534193,3567489,3581874,3729134,3742334,3814058,3845231	3502645,3508661,3534615,3567581,3582248,3729375,3742512,3814273,3845296	0.764706
testis_male_adult_37_years	chr3	150322960	150323014	150323013	-	High_confidence	2	2	9	0.402263	3.169925	chr3	150322785	150323774	LTR|ERV1|LTR12C	+	chr3	150265406	150323747	LINC01214|NR_110186.1	-	150265406,150266726,150296467,150323710	150265659,150266783,150296604,150323747	0.555556
testis_male_adult_37_years	chr12	9450327	9450525	9450488	+	High_confidence	16	19	135	6.033945	5.748066	chr12	9449408	9450949	LTR|ERV1|LTR12C	-	chr12	9449808	9491062	STRG.198604.7	+	9449808,9461323,9480555,9485856,9490852	9450632,9461434,9480712,9485909,9491062	0.770370
testis_male_adult_37_years	chr8	9188998	9189021	9188998	+	High_confidence	63	64	193	8.626307	6.479905	chr8	9188663	9189149	LTR|ERV1|MER50B	+	chr8	9188998	9202858	AC022784.1|ENST00000648105.1	+	9188998,9189347,9198923,9202391	9189046,9189597,9198991,9202858	0.854922
testis_male_adult_37_years	chr9	38408814	38408819	38408814	-	RAMPAGE_only	5	5	10	0.446959	3.121928	chr9	38408689	38408835	SINE|MIR|MIR3	-	chr9	38406527	38424447	IGFBPL1|NM_001007563.2	-	38406527,38411390,38413236,38414093,38423964	38409217,38411549,38413353,38414203,38424447	0.600000
testis_male_adult_37_years	chr22	49657355	49657371	49657355	-	High_confidence	2	2	6	0.268175	2.584963	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.833333
testis_male_adult_37_years	chr14	47119126	47119165	47119128	-	RAMPAGE_only	8	15	32	1.430269	4.390320	chr14	47119047	47119364	SINE|Alu|AluY	-	chr14	47035188	47131838	MDGA2|ENST00000554762.5	-	47035188,47061248,47096853,47131713	47035304,47061578,47097039,47131838	0.531250
testis_male_adult_37_years	chr11	8016491	8016521	8016520	-	High_confidence	138	152	252	11.263365	5.609261	chr11	8016479	8016939	LTR|ERVL-MaLR|MLT1G	-	chr11	8011277	8016509	CASC23|NR_125366.1	-	8011277,8013573,8016074	8012268,8013730,8016509	0.980159
testis_male_adult_37_years	chr8	79304116	79304117	79304116	+	High_confidence	233	234	234	10.458839	4.768745	chr8	79303311	79304532	LTR|ERV1|LTR12C	+	chr8	79304129	79304472	STRG.149317.1	+	79304129	79304472	0.940171
testis_male_adult_37_years	chr11	102116785	102116786	102116785	+	RAMPAGE_only	8	8	8	0.357567	2.500000	chr11	102116613	102116932	LINE|CR1|L3	+	chr11	102112513	102230152	YAP1|ENST00000524575.5	+	102112513,102114143,102162455,102186017,102205892,102209516,102223621,102227468,102229701	102112745,102114394,102162571,102186131,102206074,102209564,102223752,102227581,102230152	1.000000
testis_male_adult_37_years	chr5	96934417	96934438	96934437	+	RAMPAGE_only	3	3	8	0.357567	2.521641	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.875000
testis_male_adult_37_years	chr7	24597079	24597110	24597100	+	RAMPAGE_only	38	42	101	4.514285	5.795899	chr7	24596755	24597281	LINE|L2|L2	-	chr7	24574012	24666060	MPP6|ENST00000430180.5	+	24574012,24623665,24641715,24649611,24650484,24663589,24665587,24666020	24574278,24623784,24641868,24649764,24650712,24663721,24665687,24666060	0.762376
testis_male_adult_37_years	chr8	27907908	27907925	27907924	-	High_confidence	3	3	8	0.357567	2.807355	chr8	27907885	27908122	SINE|MIR|MIRb	-	chr8	27870235	27907915	STRG.144627.5	-	27870235,27879568,27904777,27907147,27907439	27872070,27879766,27904834,27907246,27907915	0.875000
testis_male_adult_37_years	chr3	152152466	152152503	152152466	+	High_confidence	13	13	57	2.547666	5.021229	chr3	152152232	152153792	LTR|ERV1|LTR12C	+	chr3	152152475	152155443	STRG.63639.1	+	152152475,152153463,152155063	152152847,152153829,152155443	0.982456
testis_male_adult_37_years	chrX	30867143	30867183	30867143	-	RAMPAGE_only	2	2	13	0.581047	3.418296	chrX	30866257	30867266	LINE|L1|L1MC3	+	chrX	30834620	30871802	TAB3|ENST00000467136.5	-	30834620,30842965,30852777,30854115,30859486,30867114,30867464,30871698	30836835,30846644,30852938,30855562,30859678,30867218,30867549,30871802	0.923077
testis_male_adult_37_years	chr8	77957444	77957472	77957471	-	High_confidence	11	11	25	1.117397	3.303465	chr8	77957285	77957586	SINE|Alu|AluYc3	+	chr8	77957040	77957296	STRG.149028.1	-	77957040	77957296	0.840000
testis_male_adult_37_years	chr6	180391	180392	180391	+	High_confidence	141	145	174	7.777085	5.128302	chr6	179399	180718	LTR|ERV1|LTR12C	+	chr6	180405	181989	STRG.106394.1	+	180405	181989	0.994253
testis_male_adult_37_years	chr5	36213174	36213178	36213177	-	High_confidence	30	30	72	3.218104	5.561375	chr5	36212793	36213310	LTR|ERVL-MaLR|MLT1F	+	chr5	36194821	36213177	NADK2|ENST00000511613.5	-	36194821,36197540,36200226,36201105,36207169,36211843,36213012	36195282,36197664,36200280,36201161,36207265,36211922,36213177	0.513889
testis_male_adult_37_years	chr15	93032686	93032687	93032686	+	High_confidence	52	52	52	2.324186	4.823331	chr15	93031644	93032922	LTR|ERV1|LTR12C	+	chr15	93032661	93033016	STRG.239941.1	+	93032661	93033016	0.576923
testis_male_adult_37_years	chr15	92917492	92917512	92917492	+	RAMPAGE_only	2	2	8	0.357567	2.807355	chr15	92917276	92917589	SINE|Alu|AluSx	+	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.875000
testis_male_adult_37_years	chr17	9152068	9152069	9152068	+	RAMPAGE_only	10	11	12	0.536351	3.251629	chr17	9151742	9152261	LTR|ERV1|LTR12F	+	chr17	9021738	9244000	STRG.250598.2	+	9021738,9022310,9162812,9179806,9182915,9221167,9239639	9021870,9023391,9163001,9179956,9182969,9221242,9244000	0.500000
testis_male_adult_37_years	chr2	69798997	69799002	69798997	-	High_confidence	65	78	128	5.721074	5.937734	chr2	69798831	69799610	LTR|ERV1|LTR19C	-	chr2	69789521	69799012	STRG.31227.4	-	69789521,69794547	69794522,69799012	0.960938
testis_male_adult_37_years	chr14	35121184	35121214	35121184	-	High_confidence	34	34	81	3.620367	4.855961	chr14	35121096	35121392	SINE|Alu|AluSx4	+	chr14	35095047	35121974	PPP2R3C|ENST00000554899.5	-	35095047,35096557,35096708,35099251,35108138,35109847,35110524,35121901	35095184,35096633,35096764,35099384,35108236,35109931,35110629,35121974	0.851852
testis_male_adult_37_years	chr4	106321570	106321596	106321591	+	RAMPAGE_only	5	5	20	0.893918	4.142664	chr4	106320774	106322302	Retroposon|SVA|SVA_A	+	chr4	106316527	106348491	STRG.79282.3	+	106316527,106324984,106327450,106328075,106331671,106336868,106347525	106321451,106325118,106327564,106328243,106331883,106337037,106348491	0.850000
testis_male_adult_37_years	chr7	116287862	116287885	116287884	+	High_confidence	11	11	24	1.072701	4.303509	chr7	116287576	116287922	LINE|L2|L2a	-	chr7	116287863	116322823	CAV2|ENST00000460222.5	+	116287863,116288046,116289851,116316431,116319640,116322801	116287907,116288114,116290050,116316510,116319759,116322823	0.708333
testis_male_adult_37_years	chr1	93505456	93505488	93505487	+	RAMPAGE_only	4	4	14	0.625742	3.238901	chr1	93505214	93505777	LTR|ERV1|LTR10C	-	chr1	93448281	93554661	FNBP1L|ENST00000370253.6	+	93448281,93499467,93522081,93523343,93524260,93529651,93530754,93532921,93534704,93544106,93546841,93547346,93549277,93550946,93552408	93448305,93499583,93522135,93523491,93524323,93529756,93530883,93533068,93534908,93544216,93546974,93547441,93549426,93551105,93554661	0.785714
testis_male_adult_37_years	chr4	184537538	184537609	184537554	-	High_confidence	14	23	67	2.994625	5.168769	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184534318	184537655	STRG.87285.1	-	184534318	184537655	0.791045
testis_male_adult_37_years	chr5	74765366	74765426	74765378	+	RAMPAGE_only	8	8	67	2.994625	5.453189	chr5	74765248	74765602	LINE|L2|L2a	-	chr5	74766990	74776912	NSA2|NM_014886.4	+	74766990,74768930,74769213,74770630,74773867,74776603	74767363,74769118,74769364,74770810,74774060,74776912	0.985075
testis_male_adult_37_years	chr1	179727776	179727788	179727776	+	RAMPAGE_only	95	95	152	6.793776	5.773401	chr1	179727227	179727791	LINE|L2|L2a	-	chr1	179730216	179742697	AL359853.3|ENST00000423879.5	+	179730216,179742354	179730417,179742697	0.684211
testis_male_adult_37_years	chr15	57451531	57451576	57451564	+	RAMPAGE_only	9	16	57	2.547666	4.465190	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.947368
testis_male_adult_37_years	chr3	114624958	114625034	114625006	-	High_confidence	83	103	566	25.297875	6.508530	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.710247
testis_male_adult_37_years	chr5	160412454	160412463	160412462	-	RAMPAGE_only	6	6	10	0.446959	3.169925	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160406348	160408421	SLU7|ENST00000520841.1	-	160406348,160407475,160407745,160407970,160408328	160406629,160407615,160407813,160408068,160408421	0.800000
testis_male_adult_37_years	chr3	118943071	118943100	118943073	+	High_confidence	13	24	64	2.860537	5.465142	chr3	118942695	118943326	LTR|Gypsy|MamGypLTR1a	+	chr3	118943072	118948241	IGSF11-AS1|ENST00000477009.2	+	118943072,118944861,118945867,118947048	118943186,118944990,118946035,118948241	0.906250
testis_male_adult_37_years	chr1	52919460	52919506	52919480	-	RAMPAGE_only	23	26	87	3.888543	5.544491	chr1	52919201	52919585	DNA|TcMar-Tigger|Tigger3c	+	chr1	52911563	52921515	ECHDC2|ENST00000480312.6	-	52911563,52911722,52912753,52913894,52921397	52911653,52912021,52912849,52914095,52921515	0.597701
testis_male_adult_37_years	chr3	16361351	16361389	16361388	+	High_confidence	9	9	40	1.787836	5.009636	chr3	16361273	16361700	LINE|L2|L2a	-	chr3	16361292	16364379	STRG.49789.1	+	16361292,16363696	16361640,16364379	0.700000
testis_male_adult_37_years	chr6	75442153	75442217	75442185	-	High_confidence	7	9	54	2.413578	5.357927	chr6	75440987	75442779	Retroposon|SVA|SVA_D	-	chr6	75308206	75442544	STRG.114823.2	-	75308206,75312396,75353538,75362743,75414696,75442105	75308897,75315202,75353717,75362917,75414978,75442544	0.962963
testis_male_adult_37_years	chr2	81481734	81481736	81481735	+	High_confidence	18	24	33	1.474964	4.582913	chr2	81481147	81482372	LTR|ERV1|LTR2752	-	chr2	81481691	81549295	STRG.32103.1	+	81481691,81548617	81482104,81549295	0.757576
testis_male_adult_37_years	chr10	11695070	11695089	11695070	-	High_confidence	2	2	9	0.402263	2.750000	chr10	11694921	11695227	LTR|ERVL-MaLR|MLT1K	-	chr10	11679754	11695017	STRG.170775.1	-	11679754,11694920	11680078,11695017	0.666667
testis_male_adult_37_years	chr17	34132400	34132401	34132400	-	High_confidence	32	32	45	2.011315	4.951147	chr17	34132192	34132725	LTR|ERV1|LTR12F	-	chr17	34085854	34132396	STRG.252801.1	-	34085854,34132139	34089250,34132396	0.555556
testis_male_adult_37_years	chr3	184247728	184247730	184247729	-	RAMPAGE_only	6	8	11	0.491655	3.121928	chr3	184247597	184247844	LINE|L2|L2c	+	chr3	184242573	184248929	STRG.67695.3	-	184242573,184242812,184243553,184243790,184244600,184245197,184245467,184245712,184248781	184242676,184242957,184243630,184243996,184244721,184245358,184245615,184245812,184248929	0.909091
testis_male_adult_37_years	chr11	3380960	3380961	3380960	+	High_confidence	9	10	10	0.446959	3.121928	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.500000
testis_male_adult_37_years	chr12	10363872	10363881	10363872	+	High_confidence	22	22	37	1.653748	4.756619	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.810811
testis_male_adult_37_years	chr11	18599579	18599605	18599598	-	High_confidence	6	6	21	0.938614	3.576618	chr11	18599501	18599670	SINE|MIR|MIRb	+	chr11	18595903	18599594	AC112694.1|ENST00000534919.1	-	18595903,18599430	18596295,18599594	0.619048
testis_male_adult_37_years	chr15	44394315	44394347	44394346	+	RAMPAGE_only	6	6	21	0.938614	3.826875	chr15	44394289	44394395	DNA|TcMar-Tigger|Tigger3c	-	chr15	44344803	44415757	STRG.235119.6	+	44344803,44379689,44380805,44402886,44413335	44353384,44379788,44380976,44403054,44415757	0.666667
testis_male_adult_37_years	chr11	106555900	106555901	106555900	+	High_confidence	33	33	35	1.564356	4.657882	chr11	106555619	106556328	LTR|ERV1|LTR12_	+	chr11	106555914	106586245	STRG.193545.1	+	106555914,106585927	106556368,106586245	0.885714
testis_male_adult_37_years	chr4	86020922	86020923	86020922	-	RAMPAGE_only	56	56	60	2.681753	4.448787	chr4	86020510	86022172	LTR|ERV1|LTR12C	-	chr4	86020221	86031431	MAPK10|ENST00000641858.1	-	86020221,86029196,86031367	86020865,86029274,86031431	0.933333
testis_male_adult_37_years	chr13	25244196	25244212	25244196	-	High_confidence	3	3	10	0.446959	3.321928	chr13	25243962	25244489	LTR|ERV1|LTR12	-	chr13	25243247	25244597	STRG.212459.2	-	25243247	25244597	0.500000
testis_male_adult_37_years	chr5	80407151	80407152	80407151	+	High_confidence	4	4	7	0.312871	2.521641	chr5	80406956	80407268	SINE|Alu|AluJr	-	chr5	80408012	80440376	ZFYVE16|NM_001284237.1	+	80408012,80434108,80436755,80439935	80408153,80434217,80439007,80440376	0.714286
testis_male_adult_37_years	chr9	38650188	38650217	38650188	+	High_confidence	4	5	15	0.670438	3.456565	chr9	38649688	38650217	LTR|ERVL-MaLR|MLT1F2	-	chr9	38650256	38662717	AL591543.1|ENST00000642095.1	+	38650256,38658688	38650376,38662717	0.666667
testis_male_adult_37_years	chr2	17758738	17758757	17758756	+	RAMPAGE_only	4	4	9	0.402263	3.169925	chr2	17758707	17758869	SINE|Alu|AluSx	+	chr2	17754159	17761514	GEN1|ENST00000532257.1	+	17754159,17759911,17761395	17754345,17760104,17761514	0.555556
testis_male_adult_37_years	chr15	58865687	58865770	58865738	-	High_confidence	21	36	131	5.855162	5.633711	chr15	58865655	58865936	LTR|ERVL|MER77	-	chr15	58861829	58865802	STRG.236293.1	-	58861829,58865510	58865284,58865802	0.625954
testis_male_adult_37_years	chr13	81226985	81226986	81226985	-	High_confidence	63	65	83	3.709759	5.481036	chr13	81226671	81227228	LTR|ERV1|LTR12_	-	chr13	81225864	81226983	LINC00564|ENST00000567258.1	-	81225864	81226983	0.975904
testis_male_adult_37_years	chr14	36090130	36090163	36090162	-	RAMPAGE_only	7	7	19	0.849222	3.681881	chr14	36089972	36090276	SINE|Alu|AluY	+	chr14	36081826	36086318	STRG.223750.1	-	36081826,36083978,36086071	36082406,36084051,36086318	0.736842
testis_male_adult_37_years	chr5	151652270	151652286	151652285	+	High_confidence	12	12	28	1.251485	3.884155	chr5	151652260	151652365	DNA|hAT-Charlie|MER20B	+	chr5	151652274	151655449	AC011374.1|ENST00000564471.1	+	151652274,151654033	151652425,151655449	0.892857
testis_male_adult_37_years	chr6	165500762	165500777	165500762	-	RAMPAGE_only	3	3	9	0.402263	3.169925	chr6	165500277	165501246	LTR|ERVK|LTR5_Hs	+	chr6	165499883	165504557	STRG.124163.1	-	165499883	165504557	0.666667
testis_male_adult_37_years	chr6	75891303	75891305	75891304	+	RAMPAGE_only	14	17	24	1.072701	4.001629	chr6	75891350	75891661	SINE|Alu|AluY	+	chr6	75817523	75915177	MYO6|ENST00000627432.2	+	75817523,75822781,75828539,75830415,75832841,75835900,75840584,75841213,75844896,75848350,75855138,75857096,75858901,75861022,75862595,75866525,75866931,75870646,75873206,75879819,75880042,75881688,75886003,75886843,75890056,75891227,75892529,75894813,75895230,75898372,75907604,75908495,75911671,75914062,75914812	75817664,75822851,75828613,75830545,75832947,75835956,75840682,75841378,75844977,75848531,75855283,75857254,75858993,75861095,75862723,75866621,75867105,75870685,75873300,75879950,75880120,75881818,75886094,75886994,75890265,75891306,75892690,75894840,75895260,75898411,75907708,75908627,75911698,75914281,75915177	0.708333
testis_male_adult_37_years	chr11	307580	307581	307580	-	RAMPAGE_only	7	7	7	0.312871	2.807355	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	0.857143
testis_male_adult_37_years	chr1	32316186	32316223	32316186	+	RAMPAGE_only	3	3	15	0.670438	3.664498	chr1	32316000	32316294	SINE|Alu|AluY	+	chr1	32292160	32327677	HDAC1|ENST00000472928.5	+	32292160,32316664,32324478,32326938,32327535	32292218,32316782,32324553,32327077,32327677	0.733333
testis_male_adult_37_years	chr17	54439445	54439503	54439489	+	High_confidence	37	38	74	3.307496	5.464596	chr17	54439199	54439691	LTR|ERV1|LTR12F	+	chr17	54439666	54451799	STRG.255384.1	+	54439666,54443858,54447465,54451538	54439723,54443937,54447575,54451799	0.810811
testis_male_adult_37_years	chr5	172776478	172776492	172776491	+	High_confidence	19	20	45	2.011315	4.850570	chr5	172776502	172776579	SINE|MIR|MIR	+	chr5	172776464	172782334	AC022217.3|ENST00000650258.1	+	172776464,172777491,172782071	172776550,172777910,172782334	0.933333
testis_male_adult_37_years	chr1	35146599	35146600	35146599	-	High_confidence	6	6	7	0.312871	2.584963	chr1	35145875	35146564	LTR|ERV1|HERV3-int	-	chr1	35141561	35146687	STRG.3295.1	-	35141561,35146298	35143033,35146687	0.714286
testis_male_adult_37_years	chr18	13071168	13071185	13071184	+	RAMPAGE_only	3	3	9	0.402263	2.947703	chr18	13071233	13071877	LINE|RTE-X|L4_A_Mam	+	chr18	13073115	13125036	CEP192|ENST00000540847.6	+	13073115,13087016,13087530,13088753,13089455,13092376,13095502,13096183,13099475,13100304,13103508,13104983,13113585,13114129,13116376,13117584,13124631	13073185,13087277,13087646,13088904,13089565,13092527,13095681,13096307,13099581,13100512,13103588,13105079,13113705,13114251,13116503,13117643,13125036	0.555556
testis_male_adult_37_years	chr21	15862404	15862418	15862404	+	RAMPAGE_only	10	10	33	1.474964	4.155652	chr21	15862214	15862446	DNA|TcMar-Tigger|Tigger4a	+	chr21	15842517	15874518	USP25|ENST00000449491.1	+	15842517,15847662,15849776,15864267,15866265,15870067,15874402	15842540,15847776,15849872,15864446,15866344,15870147,15874518	0.909091
testis_male_adult_37_years	chr2	69798913	69798914	69798913	-	High_confidence	10	10	14	0.625742	3.807355	chr2	69798831	69799610	LTR|ERV1|LTR19C	-	chr2	69789521	69799012	STRG.31227.4	-	69789521,69794547	69794522,69799012	1.000000
testis_male_adult_37_years	chr14	20928338	20928339	20928338	-	RAMPAGE_only	7	7	7	0.312871	2.807355	chr14	20928214	20928534	LTR|ERVL|MER21C	-	chr14	20801227	20803278	RNASE1|ENST00000397967.4	-	20801227,20802796	20802093,20803278	1.000000
testis_male_adult_37_years	chr15	92471706	92471707	92471706	+	High_confidence	5	6	6	0.268175	2.584963	chr15	92471642	92471799	DNA|hAT-Charlie|MER5B	-	chr15	92471676	92501117	C15orf32|NM_001301106.1	+	92471676,92472952,92500357	92472522,92473110,92501117	1.000000
testis_male_adult_37_years	chr2	71417110	71417116	71417115	+	RAMPAGE_only	3	6	9	0.402263	2.500000	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.666667
testis_male_adult_37_years	chr2	54750462	54750473	54750462	-	RAMPAGE_only	4	4	8	0.357567	2.750000	chr2	54750433	54750631	LTR|ERVL-MaLR|MLT1K	-	chr2	54747102	54748404	AC104781.1|ENST00000449838.1	-	54747102,54748359	54747454,54748404	0.875000
testis_male_adult_37_years	chr7	79616516	79616552	79616551	+	High_confidence	15	29	43	1.921923	5.041011	chr7	79616289	79616843	LTR|ERV1|LTR12_	+	chr7	79615935	79617607	STRG.132359.1	+	79615935	79617607	0.674419
testis_male_adult_37_years	chr11	12243192	12243205	12243204	+	High_confidence	4	6	19	0.849222	3.302723	chr11	12242949	12243215	LINE|RTE-X|L4_A_Mam	-	chr11	12242320	12259942	MICAL2|ENST00000534563.5	+	12242320,12256784,12258467,12259794	12242432,12256971,12258556,12259942	0.526316
testis_male_adult_37_years	chr16	58421322	58421323	58421322	+	High_confidence	11	11	11	0.491655	3.277613	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421325	58436169	LINC02137|ENST00000562322.1	+	58421325,58435691	58421385,58436169	0.727273
testis_male_adult_37_years	chr15	69072937	69072940	69072937	+	High_confidence	43	43	73	3.262800	4.952662	chr15	69072763	69073273	LTR|ERVL-MaLR|MLT1F1	+	chr15	69072937	69074866	EWSAT1|ENST00000559914.1	+	69072937,69074583	69073190,69074866	0.972603
testis_male_adult_37_years	chr3	158634514	158634515	158634514	+	High_confidence	18	19	20	0.893918	4.021928	chr3	158634523	158640540	LINE|L1|L1PA2	+	chr3	158634330	158692569	STRG.64326.3	+	158634330,158645628,158646164,158646742,158649040,158652095,158653309,158654546,158658921,158660873,158662627,158665336,158666303,158681994,158684523,158690162,158691138,158691335	158634609,158645781,158646297,158646947,158649157,158652246,158653467,158654631,158659059,158660975,158662684,158665474,158666386,158682157,158684668,158690323,158691192,158692569	0.500000
testis_male_adult_37_years	chr21	23030177	23030178	23030177	-	RAMPAGE_only	8	8	11	0.491655	3.121928	chr21	23029890	23030261	LTR|ERVL-MaLR|THE1D	-	chr21	22958966	22984777	STRG.279609.2	-	22958966,22984292	22966348,22984777	0.727273
testis_male_adult_37_years	chr8	108230887	108230921	108230887	-	RAMPAGE_only	2	2	8	0.357567	2.500000	chr8	108230688	108231127	LINE|L1|L1ME2	+	chr8	108203469	108231908	EIF3E|ENST00000519517.5	-	108203469,108214606,108216411,108217333,108228266,108229069,108231806	108203503,108214716,108216513,108217460,108228391,108229195,108231908	1.000000
testis_male_adult_37_years	chr2	69798814	69798850	69798849	-	High_confidence	73	77	211	9.430833	6.740867	chr2	69796454	69798802	LTR|ERV1|HUERS-P3-int	-	chr2	69789521	69799012	STRG.31227.4	-	69789521,69794547	69794522,69799012	0.995261
testis_male_adult_37_years	chr7	6054548	6054586	6054548	-	RAMPAGE_only	6	6	30	1.340877	4.161406	chr7	6054207	6054503	SINE|Alu|AluSx1	-	chr7	6046722	6059056	EIF2AK1|ENST00000463213.5	-	6046722,6048806,6049911,6054545,6058965	6047091,6048844,6050045,6054704,6059056	0.800000
testis_male_adult_37_years	chr5	10316325	10316363	10316351	+	High_confidence	6	6	20	0.893918	4.221928	chr5	10316109	10316439	LTR|ERV1|MER61A	-	chr5	10316272	10322594	STRG.89553.1	+	10316272,10319079,10322107	10316392,10319267,10322594	0.600000
testis_male_adult_37_years	chr17	47056645	47056669	47056645	-	RAMPAGE_only	1	1	8	0.357567	2.521641	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.625000
testis_male_adult_37_years	chr3	27194193	27194198	27194197	-	High_confidence	12	12	22	0.983310	3.584184	chr3	27194122	27194414	SINE|Alu|AluYc3	-	chr3	27174440	27194231	NEK10|ENST00000460447.1	-	27174440,27174649,27192028,27194060	27174525,27174833,27192242,27194231	0.909091
testis_male_adult_37_years	chr22	42644558	42644563	42644562	-	High_confidence	3	3	8	0.357567	2.807355	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644509	CYB5R3|ENST00000361740.8	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644509	0.875000
testis_male_adult_37_years	chr2	169479939	169479962	169479961	+	High_confidence	11	11	27	1.206789	4.532665	chr2	169479962	169480100	SINE|MIR|MIR3	+	chr2	169479501	169506490	STRG.39716.2	+	169479501,169482250,169487068,169487805,169487986,169492873,169493740,169497626,169499485,169503094,169504302,169504480,169506000	169479612,169482333,169487134,169487855,169488114,169493009,169493836,169497689,169499620,169503178,169504326,169505951,169506490	0.703704
testis_male_adult_37_years	chr12	31118999	31119017	31118999	-	RAMPAGE_only	2	2	7	0.312871	2.584963	chr12	31118893	31119042	LTR|ERV1|HERVE-int	+	chr12	31112235	31201235	AC024940.1|ENST00000641844.2	-	31112235,31112980,31114395,31114836,31116356,31117040,31124330,31125370,31126346,31127650,31129718,31130507,31131350,31132244,31133116,31133878,31135579,31135953,31136620,31138116,31139072,31144904,31145409,31146361,31147894,31148814,31149314,31150172,31154332,31157985,31158885,31170407,31171435,31172322,31172815,31173513,31177658,31178802,31183213,31185585,31188568,31194011,31194776,31195520,31200422,31201051	31112288,31113083,31114464,31114927,31116469,31117197,31124370,31125582,31126512,31127725,31129875,31130589,31131524,31132328,31133168,31133997,31135709,31136182,31136713,31138265,31139243,31145054,31145555,31146416,31148122,31148973,31149424,31150293,31154450,31158070,31159054,31170504,31171606,31172472,31172960,31173574,31177889,31178961,31183323,31185700,31188686,31194096,31194945,31195541,31200579,31201235	0.571429
testis_male_adult_37_years	chr8	69357017	69357041	69357017	+	High_confidence	4	4	13	0.581047	3.084963	chr8	69351385	69357434	LINE|L1|L1PA3	-	chr8	69356955	69358680	STRG.147868.1	+	69356955,69358547	69357437,69358680	0.923077
testis_male_adult_37_years	chr13	112333617	112333629	112333617	-	RAMPAGE_only	2	2	8	0.357567	2.521641	chr13	112333500	112333688	DNA|TcMar-Tigger|Tigger3b	-	chr13	112332103	112344100	STRG.221543.1	-	112332103,112343579	112332719,112344100	0.625000
testis_male_adult_37_years	chr15	62186086	62186087	62186086	-	High_confidence	178	178	192	8.581611	6.073470	chr15	62185768	62187127	LTR|ERV1|LTR12C	-	chr15	62172322	62186135	STRG.236598.2	-	62172322,62185877	62174545,62186135	0.822917
testis_male_adult_37_years	chr16	63730222	63730237	63730236	+	High_confidence	50	50	74	3.307496	5.393893	chr16	63729845	63730540	DNA|TcMar-Tigger|MER44D	-	chr16	63730276	63754757	LINC02165|ENST00000563061.1	+	63730276,63730475,63731409,63754605	63730312,63730650,63731489,63754757	0.702703
testis_male_adult_37_years	chr6	35383608	35383616	35383615	+	RAMPAGE_only	2	3	7	0.312871	2.584963	chr6	35383316	35384391	Retroposon|SVA|SVA_D	+	chr6	35380514	35428004	STRG.112059.5	+	35380514,35410986,35420126,35421819,35423945,35424328,35425831	35384260,35411217,35420281,35421958,35424148,35424779,35428004	0.714286
testis_male_adult_37_years	chr9	115743857	115743864	115743863	-	High_confidence	8	9	14	0.625742	3.664498	chr9	115743858	115744555	LTR|ERV1|MER50B	-	chr9	115739221	115743864	AL691420.1|ENST00000642165.1	-	115739221,115741461,115742814,115743779	115739874,115741562,115743070,115743864	0.928571
testis_male_adult_37_years	chr1	167937013	167937075	167937074	-	High_confidence	198	205	1149	51.355579	6.778070	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167916674	167937069	MPC2|NM_001143674.3	-	167916674,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937069	0.993037
testis_male_adult_37_years	chr3	136961489	136961509	136961508	+	High_confidence	7	7	13	0.581047	3.584963	chr3	136961499	136961605	LINE|L1|L1MC4a	+	chr3	136961463	137011220	STRG.61962.13	+	136961463,136980465,136982159,136989440,136991937,136995413,137010112	136961571,136980592,136982350,136989565,136992088,136995556,137011220	0.769231
testis_male_adult_37_years	chr2	98608172	98608176	98608172	-	High_confidence	7	7	18	0.804526	2.984234	chr2	98608072	98608174	SINE|MIR|MIRb	-	chr2	98599309	98608492	COA5|ENST00000328709.7	-	98599309,98604107,98608306	98600793,98604191,98608492	0.944444
testis_male_adult_37_years	chr1	162175222	162175234	162175222	-	High_confidence	19	19	46	2.056011	5.132258	chr1	162174577	162176505	LINE|L1|L1MC3	-	chr1	162167998	162175222	STRG.14235.1	-	162167998,162174757	162168478,162175222	0.739130
testis_male_adult_37_years	chr6	6285853	6285876	6285853	-	RAMPAGE_only	7	7	23	1.028006	4.061482	chr6	6285632	6286116	LTR|ERV1|MER50	+	chr6	6144077	6320691	F13A1|NM_000129.3	-	6144077,6151812,6167457,6174579,6181987,6195796,6197222,6222032,6224685,6248311,6250810,6266557,6305350,6318534,6320586	6145772,6151949,6167618,6174867,6182141,6195885,6197326,6222171,6224860,6248419,6250929,6266809,6305539,6318682,6320691	0.652174
testis_male_adult_37_years	chr3	165071930	165071931	165071930	-	High_confidence	5	5	7	0.312871	2.584963	chr3	165071563	165071935	LTR|ERVL-MaLR|MLT1B	+	chr3	165065194	165071932	STRG.65134.1	-	165065194,165067339,165068721,165069077,165071829	165065432,165067491,165068831,165069195,165071932	0.714286
testis_male_adult_37_years	chr12	70327487	70327511	70327487	+	High_confidence	5	6	19	0.849222	4.142664	chr12	70327440	70327536	SINE|MIR|MIR3	+	chr12	70327506	70335466	CNOT2|ENST00000548230.1	+	70327506,70329422,70330286,70332766,70335437	70327715,70329570,70330469,70332846,70335466	0.631579
testis_male_adult_37_years	chr22	47631658	47631711	47631678	+	High_confidence	45	51	228	10.190663	6.597947	chr22	47631336	47631805	LTR|ERVL|MLT2B1	-	chr22	47631673	47855600	AL117329.1|ENST00000423737.5	+	47631673,47635179,47686199,47686574,47686802,47687140,47704588,47738433,47854910	47631886,47635353,47686312,47686695,47686938,47687206,47704747,47738576,47855600	0.771930
testis_male_adult_37_years	chr16	86349621	86349677	86349649	-	High_confidence	35	62	235	10.503535	6.736623	chr16	86349485	86349671	LINE|L2|L2b	+	chr16	86331849	86349639	STRG.249063.1	-	86331849,86332958,86333687,86337360,86337681,86338749,86349017,86349550	86332678,86333044,86333907,86337608,86338661,86338832,86349148,86349639	0.706383
testis_male_adult_37_years	chr5	104773789	104773831	104773789	-	High_confidence	17	17	81	3.620367	5.730170	chr5	104773619	104774091	LTR|ERVL|ERV3-16A3_I-int	-	chr5	104743691	104773660	AC099520.1|ENST00000518276.1	-	104743691,104744034,104763279,104773612	104743854,104744191,104763383,104773660	0.592593
testis_male_adult_37_years	chr10	79399604	79399605	79399604	-	RAMPAGE_only	16	18	21	0.938614	3.300559	chr10	79399514	79399644	SINE|MIR|MIR3	-	chr10	79386036	79444219	ZCCHC24|ENST00000372333.3	-	79386036,79394275,79432557,79444101	79386458,79394440,79432758,79444219	0.904762
testis_male_adult_37_years	chr5	176184761	176184835	176184834	-	High_confidence	4	4	19	0.849222	3.536887	chr5	176184679	176184882	LINE|L1|L1M5	-	chr5	176173352	176185155	STRG.105884.16	-	176173352,176176281,176176758,176183230	176175901,176176450,176182763,176185155	1.000000
testis_male_adult_37_years	chr4	151701409	151701430	151701409	-	High_confidence	3	3	7	0.312871	2.807355	chr4	151701297	151701378	LINE|RTE-BovB|MamRTE1	-	chr4	151670887	151701518	GATB|ENST00000510720.1	-	151670887,151672761,151688629,151701328	151671302,151672896,151688763,151701518	0.857143
testis_male_adult_37_years	chr14	95573545	95573597	95573550	+	High_confidence	12	14	35	1.564356	4.686147	chr14	95573286	95573852	LTR|ERV1|MER50	-	chr14	95573604	95578684	LINC02318|ENST00000553785.1	+	95573604,95577428	95573682,95578684	0.514286
testis_male_adult_37_years	chr2	108844550	108844551	108844550	+	RAMPAGE_only	4	4	7	0.312871	2.807355	chr2	108844158	108844629	LINE|L1|L1MDa	-	chr2	108846516	108876578	STRG.34163.24	+	108846516,108856793,108873450,108876087	108850755,108856970,108873589,108876578	0.857143
testis_male_adult_37_years	chr7	86920894	86920913	86920902	-	High_confidence	5	5	24	1.072701	3.886842	chr7	86920666	86921157	LTR|ERVL|LTR42	+	chr7	86913025	86920868	KIAA1324L|ENST00000474609.1	-	86913025,86914722,86918441,86919219,86920762	86913204,86914860,86918544,86919310,86920868	0.875000
testis_male_adult_37_years	chr18	66258387	66258416	66258415	-	High_confidence	22	22	59	2.637058	5.205115	chr18	66258261	66258528	SINE|Alu|AluYe5	+	chr18	66257654	66258414	STRG.263427.1	-	66257654	66258414	0.830508
testis_male_adult_37_years	chr15	75626304	75626305	75626304	-	High_confidence	15	17	22	0.983310	4.186704	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	1.000000
testis_male_adult_37_years	chr7	53501135	53501140	53501135	+	High_confidence	4	4	9	0.402263	2.750000	chr7	53501097	53501512	LINE|L1|L1M4a2	-	chr7	53501135	53501576	STRG.130896.1	+	53501135	53501576	0.555556
testis_male_adult_37_years	chr9	99127897	99127898	99127897	+	High_confidence	6	7	7	0.312871	2.584963	chr9	99127861	99128148	LINE|L2|L2a	-	chr9	99127915	99149341	TGFBR1|ENST00000550253.1	+	99127915,99128854,99132508,99137858,99142535,99144731,99146484,99147653,99149179	99128002,99129100,99132739,99138089,99142703,99144888,99146609,99147784,99149341	0.857143
testis_male_adult_37_years	chr1	89127431	89127432	89127431	-	High_confidence	275	275	309	13.811031	5.489539	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89102979	89127431	STRG.9386.1	-	89102979,89108022,89109676,89110163,89112471,89114015,89116991,89117576,89120178,89121142,89121776,89125862,89126801	89107052,89108291,89109870,89110266,89112684,89114296,89117234,89117773,89120288,89121270,89121983,89126062,89127431	0.938511
testis_male_adult_37_years	chr15	42638541	42638586	42638585	+	RAMPAGE_only	4	4	17	0.759830	3.807764	chr15	42638526	42638654	SINE|MIR|MIR3	-	chr15	42629841	42670050	STARD9|ENST00000568493.1	+	42629841,42634855,42637906,42638025,42638699,42651015,42652519,42661157,42662793,42663280,42669157	42630146,42634972,42637939,42638087,42638812,42651085,42652592,42661225,42662891,42663917,42670050	0.882353
testis_male_adult_37_years	chr19	8839669	8839697	8839669	+	High_confidence	57	57	138	6.168033	6.064950	chr19	8839589	8839920	LINE|L2|L2a	-	chr19	8839667	8843318	STRG.266340.2	+	8839667,8842657	8839721,8843318	0.978261
testis_male_adult_37_years	chr8	21298222	21298239	21298225	+	High_confidence	16	16	69	3.084017	5.712319	chr8	21298161	21298736	LINE|L1|L1MEh	+	chr8	21298238	21309449	LOC101929172|NR_104677.1	+	21298238,21307769,21308109	21298407,21307893,21309449	0.666667
testis_male_adult_37_years	chr15	77285036	77285081	77285080	-	RAMPAGE_only	4	5	14	0.625742	3.182006	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.642857
testis_male_adult_37_years	chr3	160061580	160061581	160061580	+	High_confidence	268	270	302	13.498159	5.488701	chr3	160060332	160061879	LTR|ERV1|LTR12C	+	chr3	160061593	160071917	STRG.64437.1	+	160061593	160071917	0.990066
testis_male_adult_37_years	chr1	20028406	20028424	20028407	+	High_confidence	63	78	150	6.704384	6.362203	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028429	20091158	PLA2G5|ENST00000465698.5	+	20028429,20059631,20068872,20084820,20086082,20088824,20089788,20090567	20028709,20059692,20069032,20084870,20086227,20088943,20089895,20091158	0.633333
testis_male_adult_37_years	chr18	12653075	12653085	12653084	-	High_confidence	12	13	24	1.072701	4.349649	chr18	12653065	12653265	DNA|hAT-Charlie|MER20	+	chr18	12506495	12653085	SPIRE1|ENST00000449797.5	-	12506495,12512453,12535475,12546673,12635061,12653000	12506641,12512531,12535601,12546904,12635096,12653085	0.875000
testis_male_adult_37_years	chr1	89128404	89128444	89128413	+	High_confidence	7	7	48	2.145403	4.837581	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89127843	89179758	STRG.9388.1	+	89127843,89148590,89149331,89179318	89128644,89148680,89149546,89179758	0.958333
testis_male_adult_37_years	chr21	37105128	37105129	37105128	+	RAMPAGE_only	4	5	6	0.268175	2.584963	chr21	37104932	37105294	LINE|L2|L2	-	chr21	37107737	37203112	TTC3|ENST00000476784.5	+	37107737,37121816,37122982,37124618,37126079,37129002,37132681,37135379,37138633,37140560,37144524,37147480,37148545,37150077,37150819,37151892,37152950,37156654,37159698,37160801,37161989,37164050,37165549,37167554,37172594,37182773,37185705,37187048,37188494,37191333,37192111,37195674,37197569,37197881,37200231,37201439	37108446,37121979,37123028,37124742,37126143,37129063,37132766,37135514,37138714,37140673,37144645,37147603,37148647,37150170,37150884,37152029,37153277,37156906,37159745,37160858,37162063,37164215,37166615,37167620,37172744,37182913,37185774,37187145,37188595,37191424,37192213,37196036,37197696,37198025,37200324,37203112	1.000000
testis_male_adult_37_years	chr5	140697966	140697995	140697993	+	High_confidence	3	6	13	0.581047	3.251629	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140698679	140704502	ZMAT2|ENST00000519913.6	+	140698679,140700818,140702005,140703917,140704425	140698831,140700912,140702129,140703991,140704502	0.615385
testis_male_adult_37_years	chr1	154671592	154671593	154671592	+	High_confidence	9	9	9	0.402263	3.169925	chr1	154670567	154671998	LTR|ERV1|LTR12C	+	chr1	154671609	154677848	STRG.13805.1	+	154671609,154677613	154672084,154677848	0.888889
testis_male_adult_37_years	chr6	2860604	2860605	2860604	-	High_confidence	6	6	7	0.312871	2.584963	chr6	2859960	2861733	LTR|ERV1|LTR12C	+	chr6	2859571	2860629	STRG.106925.1	-	2859571	2860629	0.714286
testis_male_adult_37_years	chr14	70255745	70255772	70255745	+	High_confidence	3	6	13	0.581047	3.238901	chr14	70255023	70256182	LTR|ERV1|LTR12C	+	chr14	70255650	70291859	STRG.228191.1	+	70255650,70275295,70291476	70256189,70275360,70291859	1.000000
testis_male_adult_37_years	chr9	95831779	95831801	95831784	-	RAMPAGE_only	13	15	40	1.787836	4.453702	chr9	95831563	95831844	LTR|ERVL|LTR16D	+	chr9	95806087	95875977	LINC00476|NR_023390.1	-	95806087,95850226,95875864	95813922,95850292,95875977	0.500000
testis_male_adult_37_years	chr13	48444659	48444670	48444669	-	High_confidence	64	64	120	5.363507	6.271296	chr13	48444533	48444706	LTR|ERVL|MER21A	-	chr13	48389566	48444667	LPAR6|ENST00000465365.6	-	48389566,48401297,48404180,48408623,48415699,48417166,48422649,48423992,48426579,48439608,48444552	48389812,48401407,48404263,48408767,48415810,48417320,48422790,48424119,48426795,48439812,48444667	0.791667
testis_male_adult_37_years	chr20	8644330	8644387	8644380	+	RAMPAGE_only	8	12	39	1.743140	3.397565	chr20	8643756	8645322	Retroposon|SVA|SVA_D	+	chr20	8628287	8884896	PLCB1|ENST00000617005.4	+	8628287,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448,8788632,8789517,8790174,8881621	8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788525,8788722,8789575,8790261,8884896	0.974359
testis_male_adult_37_years	chr11	16430924	16430925	16430924	-	RAMPAGE_only	5	5	7	0.312871	2.584963	chr11	16430767	16431382	LINE|L2|L2a	+	chr11	15966448	16408884	SOX6|NM_001145811.1	-	15966448,15986203,15988996,16014941,16046513,16049712,16055751,16097608,16111802,16183885,16186782,16234581,16318445,16341011,16408697	15973112,15986420,15989230,16015050,16046701,16049938,16055901,16097688,16111923,16183954,16186955,16234671,16318653,16341252,16408884	0.571429
testis_male_adult_37_years	chr15	96984429	96984507	96984478	+	High_confidence	11	12	80	3.575671	5.471728	chr15	96984065	96984724	LTR|ERV1|LTR12C	-	chr15	96984138	97236550	STRG.240748.4	+	96984138,97091022,97236220	96984724,97091116,97236550	0.662500
testis_male_adult_37_years	chr22	36481305	36481335	36481305	-	High_confidence	13	13	45	2.011315	4.393558	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.866667
testis_male_adult_37_years	chr17	82081606	82081652	82081606	-	High_confidence	7	7	24	1.072701	4.168296	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.625000
testis_male_adult_37_years	chr6	2936951	2936957	2936951	+	High_confidence	90	90	140	6.257425	5.035787	chr6	2935664	2937343	LTR|ERV1|LTR12C	+	chr6	2936966	2938555	STRG.106905.1	+	2936966	2938555	0.992857
testis_male_adult_37_years	chr10	65786954	65786963	65786954	-	RAMPAGE_only	4	4	9	0.402263	2.750000	chr10	65786821	65787150	LTR|ERVL-MaLR|MLT1H	-	chr10	65729517	65811944	STRG.175126.1	-	65729517,65745515,65786836,65811347	65729728,65745617,65786976,65811944	0.555556
testis_male_adult_37_years	chr9	121313983	121314021	121314002	+	RAMPAGE_only	19	19	70	3.128712	5.109510	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.985714
testis_male_adult_37_years	chr7	152806921	152806956	152806955	+	RAMPAGE_only	10	10	19	0.849222	3.503258	chr7	152806919	152807158	LTR|ERVL|LTR86A2	+	chr7	152810741	152855371	ACTR3B|ENST00000479402.1	+	152810741,152816484,152820298,152823341,152825029,152852125,152853493,152854457	152814645,152816588,152820442,152823515,152825122,152852251,152853577,152855371	0.578947
testis_male_adult_37_years	chr14	93918925	93918952	93918925	+	High_confidence	4	7	20	0.893918	4.142664	chr14	93918771	93918941	DNA|hAT-Charlie|MER117	-	chr14	93918911	93929608	FAM181A|ENST00000267594.5	+	93918911,93925047,93928198	93918994,93925370,93929608	0.950000
testis_male_adult_37_years	chr3	79300403	79300424	79300423	-	High_confidence	2	2	8	0.357567	2.807355	chr3	79300039	79301347	LTR|ERV1|LTR12C	+	chr3	79283678	79301001	STRG.56579.1	-	79283678,79300023	79284781,79301001	0.625000
testis_male_adult_37_years	chr10	27981870	27981904	27981870	-	High_confidence	106	123	322	14.392077	6.393926	chr10	27981797	27981857	LINE|L2|L2b	-	chr10	27944822	27981904	ARMC4|ENST00000480504.1	-	27944822,27961567,27968922,27971107,27981465,27981828	27944962,27961715,27969018,27971313,27981582,27981904	0.981366
testis_male_adult_37_years	chr6	40523924	40523963	40523930	-	High_confidence	39	39	169	7.553606	5.604334	chr6	40523855	40523948	SINE|MIR|MIRc	-	chr6	40516335	40523933	AL033380.1|ENST00000442781.1	-	40516335,40517303,40523831	40516444,40517513,40523933	0.840237
testis_male_adult_37_years	chr1	90607373	90607374	90607373	-	High_confidence	60	60	73	3.262800	5.535380	chr1	90607206	90607558	LTR|ERVL-MaLR|THE1C	-	chr1	90604981	90607363	STRG.9543.4	-	90604981	90607363	0.643836
testis_male_adult_37_years	chr12	27030200	27030247	27030246	+	High_confidence	5	6	20	0.893918	3.346439	chr12	27030124	27030371	SINE|Alu|AluJr	-	chr12	27030259	27030673	MED21|ENST00000621885.1	+	27030259	27030673	0.850000
testis_male_adult_37_years	chr8	84859271	84859276	84859275	+	RAMPAGE_only	5	7	10	0.446959	3.169925	chr8	84858961	84859436	LTR|ERV1|MER51A	-	chr8	84705935	84921844	RALYL|ENST00000521376.1	+	84705935,84774578,84804769,84862295,84873283,84920893	84706060,84774654,84804802,84862453,84873397,84921844	0.700000
testis_male_adult_37_years	chr13	63738150	63738187	63738150	+	High_confidence	16	19	46	2.056011	4.499227	chr13	63737818	63738351	LTR|ERV1|HERVE-int	-	chr13	63738110	63742757	STRG.216239.3	+	63738110,63738872,63740765,63742351	63738349,63740243,63740909,63742757	0.869565
testis_male_adult_37_years	chr3	191316493	191316530	191316493	-	High_confidence	10	10	41	1.832532	4.784143	chr3	191316223	191317555	LTR|ERV1|LTR12C	-	chr3	191278074	191316529	STRG.68121.1	-	191278074,191282086,191304491,191316035	191278170,191282313,191304548,191316529	0.975610
testis_male_adult_37_years	chr3	129026719	129026729	129026719	-	High_confidence	17	17	52	2.324186	5.247363	chr3	129026363	129026713	LINE|CR1|L3	-	chr3	129024561	129027244	STRG.61125.6	-	129024561	129027244	0.788462
testis_male_adult_37_years	chr15	55270874	55270933	55270932	-	High_confidence	3	3	13	0.581047	3.084963	chr15	55270754	55271222	LINE|L2|L2	+	chr15	55202965	55270909	RAB27A|NM_183236.2	-	55202965,55223888,55228608,55230400,55234781,55270164,55270858	55205705,55224012,55228712,55230486,55234956,55270284,55270909	0.692308
testis_male_adult_37_years	chr7	64027858	64027885	64027858	-	High_confidence	6	6	16	0.715134	3.640224	chr7	64027634	64027932	SINE|Alu|AluSx3	+	chr7	64024427	64026952	LINC01005|ENST00000647881.1	-	64024427,64026691	64025901,64026952	0.687500
testis_male_adult_37_years	chr14	35121261	35121278	35121277	+	High_confidence	83	83	163	7.285430	4.660787	chr14	35121096	35121392	SINE|Alu|AluSx4	+	chr14	35121267	35274065	STRG.223833.3	+	35121267,35122951,35126734,35127478,35180669,35266726,35270400,35273434	35121482,35123761,35126782,35127611,35180777,35266875,35270596,35274065	0.963190
testis_male_adult_37_years	chr12	123272334	123272393	123272334	-	High_confidence	5	5	33	1.474964	4.571375	chr12	123272292	123272359	DNA|hAT-Charlie|Charlie4z	-	chr12	123261275	123272334	CDK2AP1|ENST00000544658.5	-	123261275,123265195,123267184,123272156	123261803,123265322,123267282,123272334	0.969697
testis_male_adult_37_years	chr18	49447383	49447397	49447383	-	RAMPAGE_only	14	14	22	0.983310	4.070656	chr18	49447279	49447437	LTR|ERV1|LTR9	+	chr18	49378622	49460627	DYM|ENST00000579058.5	-	49378622,49379664,49391592,49393644,49417934,49430254,49460397	49378700,49379758,49391645,49393742,49418057,49430447,49460627	0.863636
testis_male_adult_37_years	chr18	10790773	10790784	10790783	-	High_confidence	10	10	21	0.938614	3.471354	chr18	10790705	10791003	SINE|Alu|AluY	-	chr18	10789046	10791258	STRG.259415.1	-	10789046,10791200	10789365,10791258	0.857143
testis_male_adult_37_years	chr5	26484710	26484711	26484710	-	High_confidence	55	55	56	2.502970	4.751738	chr5	26484296	26485843	LTR|ERV1|LTR12C	-	chr5	26483325	26484707	STRG.91396.1	-	26483325	26484707	0.982143
testis_male_adult_37_years	chr2	179585899	179585909	179585907	-	High_confidence	9	13	26	1.162093	4.315824	chr2	179585808	179585966	LINE|L2|L2c	+	chr2	179441981	179585906	ZNF385B|NR_104234.1	-	179441981,179443223,179444875,179445549,179446524,179483271,179514084,179518527,179534706,179544826,179576115,179583974,179585867	179442177,179443468,179444966,179445728,179446770,179483434,179514246,179518638,179534788,179544969,179576267,179584067,179585906	0.807692
testis_male_adult_37_years	chr8	144853500	144853556	144853555	-	High_confidence	10	10	66	2.949929	5.487502	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	0.909091
testis_male_adult_37_years	chr1	241855465	241855512	241855465	+	High_confidence	5	6	33	1.474964	4.601410	chr1	241854717	241856139	LTR|ERV1|LTR12C	-	chr1	241855470	241861731	STRG.21885.3	+	241855470,241857344,241858505,241860516,241861405	241855557,241857482,241858718,241860704,241861731	0.878788
testis_male_adult_37_years	chr2	112063723	112063767	112063733	-	High_confidence	31	32	82	3.665063	5.941521	chr2	112063385	112063860	LINE|L2|L2c	+	chr2	112061231	112063721	STRG.34481.1	-	112061231,112062483	112061489,112063721	0.987805
testis_male_adult_37_years	chr9	123179130	123179131	123179130	-	RAMPAGE_only	18	18	21	0.938614	3.684184	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.809524
testis_male_adult_37_years	chr18	7802949	7802978	7802967	+	RAMPAGE_only	15	15	69	3.084017	4.721917	chr18	7802792	7803113	LINE|L2|L2c	-	chr18	7774139	8406858	PTPRM|ENST00000400060.8	+	7774139,7888105,7906504,7926567,7949180,7955120,8069685,8076454,8085670,8088748,8113485,8114790,8143646,8244057,8247844,8248149,8252487,8253226,8296367,8314780,8319177,8343422,8370889,8376045,8376461,8378264,8379166,8380295,8384560,8387071,8394475,8406108	7774271,7888377,7906583,7926683,7949355,7955414,8069994,8076564,8085872,8088851,8113759,8114827,8143779,8244209,8247919,8248176,8252499,8253414,8296455,8314857,8319214,8343520,8371006,8376200,8376597,8378414,8379340,8380427,8384686,8387235,8394611,8406858	0.637681
testis_male_adult_37_years	chr4	73144752	73144800	73144770	-	RAMPAGE_only	5	7	23	1.028006	3.348799	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	1.000000
testis_male_adult_37_years	chr5	92631309	92631356	92631355	-	High_confidence	7	8	31	1.385573	4.478232	chr5	92631147	92632588	LTR|ERV1|LTR12C	+	chr5	92559063	92631963	STRG.96646.1	-	92559063,92631142	92560033,92631963	0.548387
testis_male_adult_37_years	chr8	135689951	135689985	135689951	-	High_confidence	114	114	170	7.598302	5.163336	chr8	135689535	135690946	LTR|ERV1|LTR12C	-	chr8	135689176	135689933	STRG.155368.1	-	135689176	135689933	0.941176
testis_male_adult_37_years	chr4	185379738	185379739	185379738	+	RAMPAGE_only	5	5	7	0.312871	2.521641	chr4	185379591	185379800	SINE|MIR|MIR	-	chr4	185370724	185390928	AC112722.1|ENST00000514884.1	+	185370724,185370957,185390583	185370858,185371065,185390928	0.571429
testis_male_adult_37_years	chr9	3734565	3734566	3734565	+	High_confidence	113	113	128	5.721074	5.145481	chr9	3733630	3734981	LTR|ERV1|LTR12C	+	chr9	3734522	3785809	STRG.156672.1	+	3734522,3781533,3785584	3735200,3781755,3785809	1.000000
testis_male_adult_37_years	chr4	186890873	186890936	186890932	+	High_confidence	21	22	62	2.771145	4.307889	chr4	186889932	186891343	LTR|ERV1|LTR12C	+	chr4	186890913	186892458	STRG.87560.1	+	186890913	186892458	0.983871
testis_male_adult_37_years	chr3	112302646	112302665	112302664	+	High_confidence	10	11	29	1.296181	4.606739	chr3	112302478	112303209	LTR|ERV1|HERV3-int	+	chr3	112302231	112307096	STRG.59146.1	+	112302231	112307096	0.655172
testis_male_adult_37_years	chr15	30624553	30624570	30624569	+	High_confidence	5	5	10	0.446959	3.169925	chr15	30624495	30624669	LINE|CR1|L3	+	chr15	30624547	30634409	STRG.233377.16	+	30624547,30624722,30625353,30630702,30633489,30634169	30624612,30624816,30626949,30630773,30633586,30634409	0.600000
testis_male_adult_37_years	chr3	33838239	33838279	33838256	+	RAMPAGE_only	12	12	30	1.340877	4.481728	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.833333
testis_male_adult_37_years	chr19	6891209	6891210	6891209	+	High_confidence	11	12	16	0.715134	3.202820	chr19	6891022	6891369	LTR|ERVL-MaLR|THE1B	+	chr19	6891149	6901955	ADGRE1|ENST00000601198.5	+	6891149,6896397,6897148,6897427,6901874	6891226,6896541,6897304,6897547,6901955	0.875000
testis_male_adult_37_years	chr1	156926281	156926300	156926281	+	High_confidence	48	50	129	5.765770	5.951877	chr1	156926159	156926576	LTR|ERVL-MaLR|MLT1F2	-	chr1	156926293	156933085	STRG.13464.5	+	156926293,156927184,156927495,156927732,156927914,156929231,156929635,156930528,156931915,156932423	156926540,156927270,156927655,156927816,156928004,156929429,156929729,156930617,156932027,156933085	0.620155
testis_male_adult_37_years	chrX	100703117	100703142	100703141	-	RAMPAGE_only	4	4	9	0.402263	2.750000	chrX	100703070	100703372	SINE|Alu|AluJb	+	chrX	100674493	100716434	STRG.294326.10	-	100674493,100681226,100685989,100686678,100687066,100688350,100689855,100690074,100690562,100700896,100701219,100701457,100701927,100703092	100679412,100681335,100686151,100686781,100687245,100688443,100689959,100690165,100691209,100700999,100701329,100701673,100702107,100716434	0.888889
testis_male_adult_37_years	chr15	51303146	51303194	51303179	+	High_confidence	20	21	45	2.011315	4.970573	chr15	51303071	51303342	DNA|hAT-Tip100|MamTip2	-	chr15	51303405	51305021	STRG.235569.1	+	51303405	51305021	0.666667
testis_male_adult_37_years	chr5	10316085	10316106	10316105	+	High_confidence	3	3	8	0.357567	2.750000	chr5	10315943	10316109	LTR|ERVL|MER74A	+	chr5	10316272	10322594	STRG.89553.1	+	10316272,10319079,10322107	10316392,10319267,10322594	0.750000
testis_male_adult_37_years	chr14	61647388	61647409	61647408	+	High_confidence	3	3	6	0.268175	2.584963	chr14	61647432	61647514	SINE|MIR|MIR3	+	chr14	61647419	61654001	FLJ22447|ENST00000556717.2	+	61647419,61650961,61653622	61647561,61651017,61654001	0.666667
testis_male_adult_37_years	chr10	32681500	32681501	32681500	+	RAMPAGE_only	49	49	50	2.234795	4.971653	chr10	32681472	32681722	LTR|ERVL|MER76	-	chr10	32686018	32877139	CCDC7|ENST00000375028.8	+	32686018,32689052,32694878,32711619,32726733,32728931,32729331,32778976,32805014,32814369,32824517,32834814,32845242,32845542,32845875,32846375,32847832,32848595,32851806,32854399,32876346	32686080,32689163,32694992,32711730,32726832,32728997,32729457,32779084,32805098,32814453,32824604,32834898,32845326,32845626,32845959,32846459,32847916,32848718,32851932,32854489,32877139	0.720000
testis_male_adult_37_years	chr1	182447883	182447884	182447883	+	High_confidence	9	9	9	0.402263	3.169925	chr1	182447881	182448123	LTR|ERVL|ERVL-B4-int	+	chr1	182447890	182460121	RGSL1|ENST00000635539.1	+	182447890,182448246,182453957,182458318,182460003	182448034,182448364,182454040,182458393,182460121	0.555556
testis_male_adult_37_years	chr17	63086952	63086987	63086986	+	RAMPAGE_only	39	39	62	2.771145	5.212003	chr17	63086684	63087164	LTR|ERV1|LTR12	+	chr17	63073958	63427699	STRG.256309.3	+	63073958,63099174,63151269,63193990,63200770,63237813,63267747,63314387,63318956,63340100,63351249,63354782,63379717,63389307,63395742,63398820,63405121,63406153,63411510,63411997,63413542,63415527,63418306,63419998	63074014,63099357,63151380,63194139,63200957,63238077,63267873,63314669,63319090,63340332,63351416,63355390,63388757,63389544,63395928,63398914,63405255,63406277,63411686,63412130,63413634,63415674,63418407,63427699	0.629032
testis_male_adult_37_years	chr8	68508955	68508967	68508966	+	RAMPAGE_only	3	4	9	0.402263	2.750000	chr8	68508798	68509078	LTR|ERV1|MER61A	-	chr8	68521745	68776414	STRG.147911.1	+	68521745,68532982,68640375,68708993,68721360,68776398	68521971,68533149,68640511,68709079,68721437,68776414	0.888889
testis_male_adult_37_years	chr15	74155133	74155146	74155133	-	High_confidence	23	25	47	2.100707	5.054381	chr15	74154862	74155161	SINE|Alu|AluJb	-	chr15	74153038	74155133	STRG.237788.1	-	74153038,74155028	74153169,74155133	0.702128
testis_male_adult_37_years	chr11	61949801	61949821	61949820	+	High_confidence	17	17	45	2.011315	4.850534	chr11	61949804	61949945	SINE|MIR|MIR3	-	chr11	61949820	61964461	BEST1|ENST00000378043.8	+	61949820,61951770,61955106,61955717,61956843,61957386,61958145,61959497,61959891,61962254,61964103	61950427,61951958,61955201,61955951,61956998,61957464,61958298,61959578,61960043,61962893,61964461	0.866667
testis_male_adult_37_years	chr21	29077476	29077515	29077486	+	High_confidence	24	25	66	2.949929	5.114332	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29175219	STRG.280533.1	+	29077495,29080551,29085071,29085812,29091500,29091667,29092438,29109039,29130794,29133305,29149188,29159940,29174711	29077713,29080708,29085143,29085917,29091576,29091761,29092581,29109183,29130923,29133414,29149250,29160056,29175219	0.878788
testis_male_adult_37_years	chr3	129256142	129256146	129256142	+	RAMPAGE_only	2	2	6	0.268175	2.584963	chr3	129256170	129256401	DNA|hAT|MamRep38	+	chr3	129260226	129265675	COPG1|ENST00000504547.1	+	129260226,129260618,129263903,129265548	129260400,129260807,129263999,129265675	0.833333
testis_male_adult_37_years	chr9	105700957	105700969	105700959	+	High_confidence	10	16	30	1.340877	4.487123	chr9	105700976	105701213	LTR|ERVL|LTR50	+	chr9	105700983	105776612	TMEM38B|ENST00000374688.5	+	105700983,105705596,105721536,105722533,105748072,105773864	105701643,105705753,105721721,105722621,105748190,105776612	0.933333
testis_male_adult_37_years	chr16	78241672	78241729	78241690	-	High_confidence	39	73	217	9.699008	5.912369	chr16	78241416	78241735	SINE|Alu|AluSz	-	chr16	78234266	78241744	STRG.248337.1	-	78234266,78237631,78238087,78241197	78234997,78237682,78238188,78241744	0.990783
testis_male_adult_37_years	chr3	148280084	148280085	148280084	-	High_confidence	284	286	300	13.408767	5.940132	chr3	148279782	148281080	LTR|ERV1|LTR12C	-	chr3	148195728	148280098	LINC02045|ENST00000460324.1	-	148195728,148207845,148210024,148220509,148279781	148195834,148207934,148210088,148220612,148280098	0.780000
testis_male_adult_37_years	chr18	1407205	1407231	1407230	-	High_confidence	44	45	166	7.419518	6.376668	chr18	1407047	1407340	SINE|Alu|AluY	+	chr18	1268310	1407180	LINC00470|ENST00000412816.7	-	1268310,1272441,1275965,1368484,1406986	1269852,1272511,1276077,1368597,1407180	0.734940
testis_male_adult_37_years	chr2	195694323	195694353	195694323	+	RAMPAGE_only	2	2	9	0.402263	3.169925	chr2	195690858	195694406	LINE|L1|L1PB1	-	chr2	195680476	195717383	SLC39A10|ENST00000465851.1	+	195680476,195683698,195706615,195708655,195713432,195716636	195681050,195683906,195706785,195708844,195713553,195717383	0.888889
testis_male_adult_37_years	chr16	28538635	28538677	28538676	-	High_confidence	4	4	14	0.625742	3.700440	chr16	28538407	28538698	SINE|Alu|AluJo	+	chr16	28537506	28538951	NUPR1|ENST00000567646.1	-	28537506,28538005,28538525,28538795	28537669,28538155,28538654,28538951	0.500000
testis_male_adult_37_years	chr5	96814098	96814148	96814133	-	High_confidence	4	5	27	1.206789	4.209867	chr5	96813986	96814250	LTR|ERVL-MaLR|MLT1E1A	-	chr5	96774483	96814145	ERAP1|NM_001198541.1	-	96774483,96780422,96781057,96781692,96783050,96783923,96785787,96786469,96788530,96790295,96790511,96792060,96793399,96793802,96795041,96797174,96800861,96803402,96814057	96776551,96780504,96781198,96781854,96783235,96784080,96785971,96786549,96788685,96790367,96790643,96792192,96793513,96793957,96795162,96797309,96801000,96803943,96814145	0.962963
testis_male_adult_37_years	chr3	81767706	81767749	81767736	+	High_confidence	5	5	34	1.519660	4.351410	chr3	81766495	81767950	LTR|ERV1|LTR12C	-	chr3	81767502	81768649	STRG.56758.1	+	81767502	81768649	0.529412
testis_male_adult_37_years	chr1	35146675	35146676	35146675	-	High_confidence	13	14	18	0.804526	3.836592	chr1	35146564	35147036	LTR|ERV1|LTR2C	-	chr1	35141561	35146687	STRG.3295.1	-	35141561,35146298	35143033,35146687	0.833333
testis_male_adult_37_years	chr9	81976850	81976865	81976850	-	High_confidence	3	4	8	0.357567	2.500000	chr9	81976760	81977074	SINE|Alu|AluY	-	chr9	81930225	81977089	AL158154.2|ENST00000585776.5	-	81930225,81946389,81967535,81973940,81976607	81931394,81946486,81967688,81974247,81977089	0.750000
testis_male_adult_37_years	chr1	33870880	33870972	33870880	+	High_confidence	6	8	30	1.340877	3.883337	chr1	33870690	33871171	LTR|ERVL-MaLR|MLT1F2	+	chr1	33870225	33873811	CSMD2-AS1|ENST00000414868.1	+	33870225,33870871,33873601	33870424,33871008,33873811	0.733333
testis_male_adult_37_years	chr5	12574568	12574661	12574660	-	High_confidence	5	6	35	1.564356	4.256149	chr5	12573943	12575033	LTR|ERV1|LTR12C	-	chr5	12529910	12574773	STRG.89887.2	-	12529910,12571815,12574503	12530613,12571904,12574773	0.771429
testis_male_adult_37_years	chr18	71237127	71237140	71237139	-	High_confidence	7	7	15	0.670438	3.456565	chr18	71237026	71237386	LTR|ERVL-MaLR|THE1C	+	chr18	71216703	71237102	AC091691.2|ENST00000581940.1	-	71216703,71223056,71224130,71237021	71216901,71223157,71224317,71237102	0.533333
testis_male_adult_37_years	chr4	72766637	72766638	72766637	+	High_confidence	152	154	180	8.045260	5.374129	chr4	72765716	72767051	LTR|ERV1|LTR12C	+	chr4	72766651	72767546	STRG.76109.1	+	72766651	72767546	0.972222
testis_male_adult_37_years	chr4	151910167	151910181	151910169	-	High_confidence	85	131	246	10.995189	4.858080	chr4	151910065	151910596	DNA|hAT-Tip100|MER45B	+	chr4	151905225	151910179	STRG.84447.1	-	151905225,151906031,151909997	151905313,151906121,151910179	0.849593
testis_male_adult_37_years	chr14	53217614	53217753	53217654	+	High_confidence	64	72	360	16.090521	6.776999	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217711	53687258	AL365295.1|ENST00000456100.5	+	53217711,53318030,53369451,53687198	53218055,53318138,53369501,53687258	0.505556
testis_male_adult_37_years	chr22	24467203	24467238	24467237	+	RAMPAGE_only	4	4	10	0.446959	2.846439	chr22	24467213	24467377	SINE|MIR|MIR3	+	chr22	24494106	24526668	UPB1|ENST00000415388.5	+	24494106,24502125,24510748,24513323,24515200,24520386,24521985,24523618,24525710	24495507,24502213,24510843,24513485,24515370,24520468,24522028,24523773,24526668	0.700000
testis_male_adult_37_years	chr14	98093306	98093318	98093317	+	High_confidence	12	12	29	1.296181	4.680813	chr14	98093184	98093665	LTR|ERVL-MaLR|MLT1G3	+	chr14	98093328	98094976	STRG.231053.1	+	98093328	98094976	0.724138
testis_male_adult_37_years	chr7	144666705	144666741	144666705	-	RAMPAGE_only	2	2	8	0.357567	2.521641	chr7	144666565	144667134	LINE|L2|L2a	+	chr7	144451940	144738922	TPK1|ENST00000482940.5	-	144451940,144531063,144548490,144591422,144606928,144623165,144648806,144667725,144681806,144682908,144736153,144738835	144453663,144531169,144548602,144591569,144607050,144623261,144648879,144667846,144681864,144682978,144736253,144738922	0.750000
testis_male_adult_37_years	chr6	52201512	52201530	52201529	+	High_confidence	8	10	13	0.581047	3.392747	chr6	52200778	52201785	LINE|L1|HAL1	+	chr6	52201512	52208154	STRG.113305.1	+	52201512,52207981	52201879,52208154	0.923077
testis_male_adult_37_years	chr1	160263364	160263407	160263372	-	High_confidence	7	8	42	1.877227	4.671730	chr1	160263341	160263646	SINE|Alu|AluSz	+	chr1	160215714	160262560	DCAF8|NM_015726.3	-	160215714,160218323,160218848,160222650,160224441,160225061,160225590,160231296,160237134,160238606,160239696,160243959,160261284,160262448	160217708,160218440,160218968,160222781,160224549,160225119,160225663,160231407,160237229,160238747,160240370,160244034,160261358,160262560	0.976190
testis_male_adult_37_years	chr16	72094408	72094456	72094455	-	High_confidence	3	4	13	0.581047	3.392747	chr16	72094430	72094550	LINE|L2|L2a	+	chr16	72086396	72094431	TXNL4B|ENST00000426362.6	-	72086396,72088986,72090617,72094193	72086802,72089138,72090786,72094431	0.846154
testis_male_adult_37_years	chr1	173495447	173495465	173495447	+	RAMPAGE_only	6	9	24	1.072701	3.969002	chr1	173495175	173496290	LTR|ERV1|PABL_A-int	+	chr1	173498200	173500262	STRG.15130.5	+	173498200	173500262	0.791667
testis_male_adult_37_years	chr11	93383461	93383466	93383465	+	High_confidence	8	8	13	0.581047	2.653544	chr11	93383131	93383641	LINE|L1|L1MB7	+	chr11	93383467	93438470	DEUP1|ENST00000525646.1	+	93383467,93385397,93389019,93394458,93396238,93408230,93414999,93437542	93383610,93385543,93389125,93394656,93396325,93408427,93415114,93438470	1.000000
testis_male_adult_37_years	chr10	89829555	89829565	89829555	+	High_confidence	5	7	21	0.938614	3.826875	chr10	89829592	89829906	LTR|ERVL|ERVL-E-int	+	chr10	89829555	89840861	STRG.177856.2	+	89829555,89835200	89829745,89840861	0.904762
testis_male_adult_37_years	chr3	31709149	31709166	31709154	-	High_confidence	10	12	45	2.011315	5.054172	chr3	31709037	31709243	LINE|RTE-BovB|MamRTE1	-	chr3	31702375	31709164	OSBPL10|ENST00000490009.1	-	31702375,31708714	31702508,31709164	0.888889
testis_male_adult_37_years	chr4	48255295	48255357	48255295	-	RAMPAGE_only	9	9	65	2.905233	4.915874	chr4	48255094	48255505	LTR|ERVL-MaLR|MLT1K	-	chr4	48135782	48269797	TEC|NM_003215.2	-	48135782,48138664,48138903,48141354,48145078,48145407,48146324,48149556,48150862,48156679,48163701,48167777,48168585,48170247,48171367,48176081,48228476,48269751	48137499,48138822,48139022,48141419,48145295,48145579,48146399,48149690,48150942,48156734,48163767,48167953,48168626,48170376,48171449,48176186,48228659,48269797	0.830769
testis_male_adult_37_years	chr12	28305219	28305220	28305219	+	RAMPAGE_only	5	5	7	0.312871	2.521641	chr12	28305153	28305264	LINE|L2|L2a	+	chr12	28302633	28450259	CCDC91|ENST00000539904.1	+	28302633,28304625,28305648,28306741,28307644,28362437,28391303,28450160	28302811,28304711,28305779,28306945,28307749,28362515,28391411,28450259	0.857143
testis_male_adult_37_years	chr8	30732289	30732330	30732329	+	High_confidence	3	3	10	0.446959	3.321928	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30732246	30766470	UBXN8|ENST00000620074.4	+	30732246,30744327,30751395,30753034,30754664,30756764,30760887,30763272,30766226	30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763347,30766470	0.600000
testis_male_adult_37_years	chr19	39838075	39838095	39838075	-	High_confidence	63	68	189	8.447524	6.057104	chr19	39837878	39838078	SINE|MIR|MIRb	-	chr19	39834459	39838091	FBL|ENST00000593503.5	-	39834459,39834667,39836555,39837710,39837958	39834562,39834813,39836668,39837843,39838091	0.915344
testis_male_adult_37_years	chr3	156673588	156673594	156673593	-	High_confidence	34	34	57	2.547666	4.757462	chr3	156673372	156673596	LTR|ERVL-MaLR|MLT1J-int	-	chr3	156671921	156672870	TIPARP-AS1|ENST00000463449.1	-	156671921,156672344	156672130,156672870	0.789474
testis_male_adult_37_years	chr22	47487947	47487948	47487947	-	High_confidence	216	218	241	10.771710	5.028125	chr22	47487531	47488870	LTR|ERV1|LTR12C	-	chr22	47487476	47487997	STRG.286752.2	-	47487476	47487997	0.979253
testis_male_adult_37_years	chr11	31335493	31335530	31335493	-	RAMPAGE_only	2	2	10	0.446959	2.725481	chr11	31329394	31335540	LINE|L1|L1PA6	-	chr11	30878583	31328280	DCDC1|ENST00000597505.5	-	30878583,30881157,30892817,30894247,30899540,30900345,30903490,30904960,30906539,30908945,30911326,30915510,30916869,30920775,30922502,30925308,30931770,30952444,31064468,31065018,31077864,31091392,31094049,31102176,31103643,31106796,31110259,31127468,31137691,31241449,31265506,31290646,31305614,31306231,31307638,31328116	30878711,30881308,30892997,30894384,30899642,30900498,30903683,30905164,30906725,30909116,30911420,30915711,30917028,30920935,30922638,30925408,30931952,30952568,31064626,31065153,31077925,31091511,31094184,31102282,31103769,31106960,31110361,31127639,31137784,31241616,31265600,31290852,31305777,31306388,31307908,31328280	0.900000
testis_male_adult_37_years	chr3	14047155	14047206	14047155	-	RAMPAGE_only	13	13	47	2.100707	4.505045	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14040375	14041611	STRG.49364.1	-	14040375	14041611	0.702128
testis_male_adult_37_years	chr12	130651381	130651391	130651390	+	High_confidence	5	5	11	0.491655	3.277613	chr12	130651381	130651515	SINE|MIR|MIR	-	chr12	130651370	130660651	AC095350.1|ENST00000443685.4	+	130651370,130657822,130660033	130651479,130658806,130660651	0.909091
testis_male_adult_37_years	chr1	20028203	20028227	20028226	+	High_confidence	3	3	11	0.491655	3.121928	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028178	20091190	PLA2G5|ENST00000486277.5	+	20028178,20046101,20054791,20059631,20066023,20068872,20084820,20086082,20089788,20090567	20028709,20046141,20054839,20059692,20066129,20069032,20084870,20086227,20089895,20091190	0.727273
testis_male_adult_37_years	chr7	79768016	79768027	79768026	+	High_confidence	7	8	15	0.670438	3.906891	chr7	79767147	79768527	LTR|ERV1|LTR12C	-	chr7	79768027	79974161	GNAI1|ENST00000650351.1	+	79768027,79772928,79811731,79915066,79956969,79969547	79768129,79773000,79811838,79915167,79957052,79974161	0.533333
testis_male_adult_37_years	chr4	16179093	16179104	16179093	-	RAMPAGE_only	2	2	8	0.357567	2.750000	chr4	16179082	16179441	DNA|TcMar-Tigger|Tigger3a	-	chr4	16166672	16175041	TAPT1|ENST00000507728.1	-	16166672,16174203,16174669	16166793,16174272,16175041	0.875000
testis_male_adult_37_years	chr6	8165187	8165188	8165187	+	High_confidence	33	34	35	1.564356	4.395999	chr6	8164155	8165373	LTR|ERV1|LTR12C	+	chr6	8164705	8166567	STRG.107681.1	+	8164705	8166567	0.914286
testis_male_adult_37_years	chr3	1987572	1987597	1987596	-	High_confidence	9	10	22	0.983310	4.152391	chr3	1987400	1987702	SINE|Alu|AluY	+	chr3	1962380	1987470	AC018814.1|ENST00000418972.1	-	1962380,1987368	1962635,1987470	0.681818
testis_male_adult_37_years	chr20	5118455	5118509	5118508	-	RAMPAGE_only	10	11	40	1.787836	4.853056	chr20	5118300	5118545	SINE|Alu|AluJr4	+	chr20	5114952	5120001	PCNA|NM_182649.1	-	5114952,5115448,5117469,5118609,5118768,5119577	5115362,5115572,5117664,5118677,5118866,5120001	0.625000
testis_male_adult_37_years	chr3	11634256	11634260	11634256	-	RAMPAGE_only	3	3	8	0.357567	2.807355	chr3	11634009	11634538	LINE|L2|L2	+	chr3	11559350	11627406	VGLL4|ENST00000458499.5	-	11559350,11564796,11601832,11626356,11627315	11559455,11565019,11602022,11626513,11627406	0.625000
testis_male_adult_37_years	chr12	8697164	8697194	8697164	+	High_confidence	3	3	9	0.402263	2.500000	chr12	8697043	8697239	SINE|MIR|MIRc	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.777778
testis_male_adult_37_years	chr4	81164921	81164949	81164921	+	High_confidence	3	3	11	0.491655	3.095795	chr4	81164812	81164959	LINE|CR1|X6B_LINE	+	chr4	81164939	81193395	AC139722.1|ENST00000512502.5	+	81164939,81173758,81175443,81192179,81193059	81164998,81173930,81175591,81192246,81193395	0.545455
testis_male_adult_37_years	chr1	112957342	112957343	112957342	+	High_confidence	29	35	40	1.787836	4.127421	chr1	112957313	112957439	LINE|L2|L2c	-	chr1	112956460	112975430	SLC16A1-AS1|ENST00000428411.5	+	112956460,112960476,112968034	112957722,112960575,112975430	0.925000
testis_male_adult_37_years	chr5	33297999	33298025	33297999	-	High_confidence	29	29	83	3.709759	5.812076	chr5	33297738	33298188	LTR|ERV1|MER48	-	chr5	33023054	33297910	AC010343.3|ENST00000510327.1	-	33023054,33263499,33297731	33023327,33263666,33297910	0.710843
testis_male_adult_37_years	chr14	45081389	45081390	45081389	+	High_confidence	12	12	16	0.715134	3.625000	chr14	45080253	45081674	LTR|ERV1|LTR12C	+	chr14	45081570	45082246	STRG.225478.1	+	45081570	45082246	0.937500
testis_male_adult_37_years	chr1	13440085	13440086	13440085	+	High_confidence	53	73	74	3.307496	4.949226	chr1	13439100	13440398	LTR|ERV1|LTR12C	+	chr1	13440027	13442678	STRG.1136.1	+	13440027,13441156	13440445,13442678	0.905405
testis_male_adult_37_years	chr1	235593940	235593942	235593940	-	High_confidence	85	152	201	8.983874	5.621133	chr1	235593518	235594948	LTR|ERV1|LTR12C	-	chr1	235550831	235593952	STRG.20979.3	-	235550831,235583739,235593667	235552237,235583848,235593952	0.686567
testis_male_adult_37_years	chr2	189674195	189674218	189674196	-	High_confidence	8	17	44	1.966619	4.975418	chr2	189673840	189674276	LINE|L2|L2b	+	chr2	189673043	189673672	STRG.42168.1	-	189673043	189673672	0.590909
testis_male_adult_37_years	chr7	79740133	79740134	79740133	+	High_confidence	110	110	120	5.363507	5.741970	chr7	79739118	79740549	LTR|ERV1|LTR12C	+	chr7	79740140	79741605	STRG.132544.1	+	79740140	79741605	1.000000
testis_male_adult_37_years	chr17	16682944	16682976	16682944	+	RAMPAGE_only	5	7	28	1.251485	4.423252	chr17	16682883	16683018	SINE|Alu|AluSx3	-	chr17	16690231	16712148	CCDC144A|ENST00000340621.9	+	16690231,16692978,16705150,16707471,16708795,16711678	16690744,16693049,16705399,16707542,16709635,16712148	0.535714
testis_male_adult_37_years	chr2	144319869	144319870	144319869	-	High_confidence	6	7	7	0.312871	2.584963	chr2	144319780	144319934	LINE|RTE-BovB|MamRTE1	+	chr2	144145619	144319870	GTDC1|ENST00000417450.5	-	144145619,144208602,144211514,144235675,144319718	144145739,144208804,144211579,144235737,144319870	0.571429
testis_male_adult_37_years	chr8	81439402	81439420	81439408	+	High_confidence	9	13	51	2.279490	4.618025	chr8	81437506	81439542	LINE|L1|L1PB1	-	chr8	81439416	81555208	STRG.149522.1	+	81439416,81439990,81521706,81525842,81526273,81554556	81439630,81440093,81521817,81525964,81526456,81555208	0.901961
testis_male_adult_37_years	chr9	38076501	38076504	38076503	+	High_confidence	12	17	20	0.893918	3.684184	chr9	38075189	38077013	LTR|ERV1|LTR12C	+	chr9	38076485	38088948	STRG.160510.2	+	38076485,38076802	38076703,38088948	1.000000
testis_male_adult_37_years	chr22	25477438	25477457	25477438	+	RAMPAGE_only	4	7	20	0.893918	3.721612	chr22	25477318	25477526	SINE|MIR|MIRb	-	chr22	25476217	25479971	AL008721.2|ENST00000609475.1	+	25476217	25479971	0.900000
testis_male_adult_37_years	chr3	130276692	130276722	130276692	-	High_confidence	14	14	42	1.877227	4.180365	chr3	130276493	130276657	SINE|MIR|MIRc	-	chr3	130275248	130276680	STRG.61282.1	-	130275248,130276615	130275975,130276680	0.952381
testis_male_adult_37_years	chr2	11201309	11201353	11201318	-	RAMPAGE_only	5	5	22	0.983310	4.121928	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.909091
testis_male_adult_37_years	chr15	31923422	31923426	31923425	+	High_confidence	11	11	22	0.983310	3.984184	chr15	31923140	31923736	LTR|ERV1|LTR12_	+	chr15	31923407	31924522	STRG.233081.1	+	31923407	31924522	0.863636
testis_male_adult_37_years	chr5	36001010	36001037	36001010	-	High_confidence	19	19	69	3.084017	5.424006	chr5	36000067	36001700	LTR|ERV1|PRIMA4-int	+	chr5	35960755	36001028	UGT3A1|NM_001171873.1	-	35960755,35965385,35968018,35988449,35997238,36000967	35962951,35965917,35968133,35988551,35997329,36001028	0.840580
testis_male_adult_37_years	chr16	67415992	67416006	67415992	+	RAMPAGE_only	5	5	21	0.938614	3.826875	chr16	67415897	67416018	LINE|L2|L2b	+	chr16	67425348	67426071	STRG.246972.1	+	67425348	67426071	0.904762
testis_male_adult_37_years	chr19	48868595	48868617	48868613	-	High_confidence	467	555	2022	90.375093	7.718857	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.994065
testis_male_adult_37_years	chr11	77571060	77571090	77571089	+	High_confidence	6	9	17	0.759830	3.572469	chr11	77570921	77571455	LTR|ERV1|LTR61	+	chr11	77571088	77575662	LOC646029|NR_130930.1	+	77571088,77571514,77574210	77571310,77571685,77575662	1.000000
testis_male_adult_37_years	chr2	200398747	200398783	200398747	+	RAMPAGE_only	11	11	51	2.279490	4.928367	chr2	200398745	200398915	SINE|MIR|MIR3	+	chr2	200393076	200467378	SPATS2L|ENST00000438761.5	+	200393076,200412310,200416378,200419249,200440648,200459768,200467289	200393273,200412419,200416428,200419496,200440784,200459827,200467378	0.823529
testis_male_adult_37_years	chr5	65651307	65651344	65651343	+	RAMPAGE_only	2	2	8	0.357567	2.750000	chr5	65651139	65651386	SINE|Alu|AluJr	+	chr5	65655633	65661087	TRAPPC13|ENST00000520525.1	+	65655633,65658367,65660698	65655653,65658501,65661087	0.750000
testis_male_adult_37_years	chr12	90917996	90918020	90917996	+	High_confidence	3	3	10	0.446959	2.721928	chr12	90917467	90918222	LTR|ERV1|LTR60B	-	chr12	90918022	90948669	LINC00615|ENST00000546725.1	+	90918022,90938670,90940148,90946423,90947654	90918050,90938753,90940360,90946491,90948669	0.500000
testis_male_adult_37_years	chr8	112808426	112808445	112808432	-	High_confidence	8	11	27	1.206789	4.458591	chr8	112808347	112808904	LTR|ERV1|LTR6A	+	chr8	112489337	112808433	STRG.153738.2	-	112489337,112492488,112503789,112506690,112517033,112550670,112552593,112556762,112573500,112587065,112636824,112638695,112643373,112645108,112650160,112656153,112666276,112682441,112685405,112689867,112800161,112808360	112489421,112492683,112503977,112506829,112517225,112550873,112552720,112556954,112573657,112587235,112637005,112638911,112643530,112645225,112650349,112656341,112666415,112682636,112685732,112690050,112800274,112808433	0.740741
testis_male_adult_37_years	chr20	50131139	50131162	50131139	-	High_confidence	10	10	26	1.162093	3.753270	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.961538
testis_male_adult_37_years	chr2	109005950	109005982	109005974	-	High_confidence	25	27	111	4.961244	6.324408	chr2	109005908	109006090	LTR|ERVL-MaLR|MLT1J2	-	chr2	109004054	109006011	STRG.34362.2	-	109004054	109006011	0.594595
testis_male_adult_37_years	chr7	150039088	150039089	150039088	+	RAMPAGE_only	6	6	9	0.402263	3.000000	chr7	150039030	150039107	LTR|ERV1|HERVE-int	-	chr7	150034246	150045092	STRG.140697.6	+	150034246,150041220	150040472,150045092	0.888889
testis_male_adult_37_years	chr15	63746926	63746956	63746955	-	RAMPAGE_only	2	2	8	0.357567	2.521641	chr15	63746812	63746905	LINE|L2|L2c	-	chr15	63622837	63833885	STRG.236726.2	-	63622837,63623724,63624157,63625984,63628676,63630465,63632708,63633847,63634732,63635960,63637504,63638410,63638710,63640151,63641469,63642956,63643403,63644991,63645482,63648068,63649724,63651252,63652413,63654118,63655741,63656087,63658543,63659735,63660972,63661752,63662983,63664469,63665918,63666355,63669537,63672495,63674341,63677844,63680076,63680536,63686358,63689588,63690540,63692410,63693963,63694311,63694773,63696123,63698727,63706779,63712774,63713352,63716301,63718573,63718782,63723181,63725291,63727646,63729235,63729496,63732923,63734723,63746917,63747723,63749366,63749646,63752957,63754504,63755228,63756436,63758174,63764095,63774693,63833821	63622891,63623890,63624327,63626154,63628815,63630635,63632811,63633970,63634888,63636142,63637643,63638536,63638776,63640445,63641643,63643058,63643550,63645097,63645682,63648199,63649925,63651380,63652541,63654324,63655955,63656358,63658718,63659936,63661025,63662021,63663204,63664594,63666150,63666472,63669698,63672694,63675093,63678365,63680160,63680776,63686535,63689699,63690647,63692566,63694157,63694549,63694894,63696339,63698996,63706831,63712895,63713665,63716473,63718694,63718897,63723355,63725513,63727838,63729368,63729649,63733145,63734849,63747083,63747858,63749538,63749791,63753085,63754648,63755325,63756748,63758369,63764191,63775649,63833885	0.750000
testis_male_adult_37_years	chr9	106932617	106932642	106932641	+	High_confidence	15	16	26	1.162093	4.286790	chr9	106932680	106932720	SINE|MIR|MIRc	+	chr9	106932636	106972225	ZNF462|ENST00000479166.1	+	106932636,106935502,106938915,106972004	106932805,106935621,106939107,106972225	0.884615
testis_male_adult_37_years	chr22	47631568	47631604	47631599	-	High_confidence	25	25	81	3.620367	5.276406	chr22	47631336	47631805	LTR|ERVL|MLT2B1	-	chr22	47621042	47631569	LINC00898|NR_033377.1	-	47621042,47622455,47624467,47627161,47627437,47629327	47621101,47622952,47625633,47627242,47627577,47631569	1.000000
testis_male_adult_37_years	chr7	92477515	92477545	92477515	-	High_confidence	29	29	71	3.173408	4.865791	chr7	92477412	92478192	LTR|ERV1|LTR17	-	chr7	92474591	92477986	ERVW-1|ENST00000603252.1	-	92474591,92477381	92475306,92477986	0.901408
testis_male_adult_37_years	chr11	135275	135276	135275	-	RAMPAGE_only	4	4	7	0.312871	2.584963	chr11	134807	135227	DNA|hAT-Charlie|MER1A	-	chr11	126986	131920	LINC01001|NR_028326.1	-	126986,131466,131751	131373,131524,131920	0.714286
testis_male_adult_37_years	chr17	63489935	63489958	63489956	+	High_confidence	5	7	18	0.804526	3.836592	chr17	63489921	63490023	SINE|MIR|MIR3	-	chr17	63490347	63493446	ACE|ENST00000583645.1	+	63490347,63491208,63493435	63491051,63491381,63493446	0.500000
testis_male_adult_37_years	chr19	9323740	9323804	9323748	+	High_confidence	6	6	37	1.653748	4.332874	chr19	9323408	9324010	LTR|ERV1|MER51A	+	chr19	9323771	9343845	ZNF559|NM_001202409.1	+	9323771,9324694,9337795,9338493,9339192,9341101,9341616	9324228,9324780,9338017,9338582,9339319,9341184,9343845	0.918919
testis_male_adult_37_years	chr19	31023387	31023419	31023418	+	High_confidence	9	10	25	1.117397	4.053661	chr19	31023100	31023570	LTR|ERVL|MER70A	+	chr19	31024064	31030728	STRG.268360.1	+	31024064,31030163	31024266,31030728	0.920000
testis_male_adult_37_years	chr8	81533893	81533912	81533893	-	RAMPAGE_only	6	6	11	0.491655	3.027169	chr8	81533082	81534670	LTR|ERVL|ERV3-16A3_I-int	-	chr8	81524980	81531378	FABP12|ENST00000360464.4	-	81524980,81527019,81529437,81531242	81525120,81527121,81529610,81531378	1.000000
testis_male_adult_37_years	chr5	146051317	146051322	146051320	+	RAMPAGE_only	3	6	10	0.446959	2.725481	chr5	146051185	146051880	LINE|L2|L2a	-	chr5	146050085	146062781	SH3RF2|ENST00000511705.1	+	146050085,146055980,146059865,146062425	146050127,146056231,146060224,146062781	0.500000
testis_male_adult_37_years	chr5	7230437	7230438	7230437	+	High_confidence	12	12	15	0.670438	3.807355	chr5	7230410	7230536	LTR|ERVL|LTR33A	-	chr5	7230436	7231137	STRG.88895.1	+	7230436	7231137	0.666667
testis_male_adult_37_years	chr4	41207886	41207902	41207901	-	High_confidence	3	3	8	0.357567	2.807355	chr4	41207870	41207977	DNA|hAT-Charlie|Charlie18a	-	chr4	41065589	41207908	APBB2|ENST00000503555.5	-	41065589,41100638,41142986,41177558,41207836	41065673,41100750,41143142,41177690,41207908	0.500000
testis_male_adult_37_years	chr12	31121301	31121338	31121301	-	RAMPAGE_only	12	12	33	1.474964	4.235981	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.515152
testis_male_adult_37_years	chr13	77755945	77755978	77755973	+	RAMPAGE_only	3	4	13	0.581047	3.188722	chr13	77755997	77756134	SINE|MIR|MIRb	+	chr13	77743104	77764227	SLAIN1|ENST00000358679.3	+	77743104,77744282,77746513,77753202,77760827,77763144	77743165,77744432,77746855,77753358,77761110,77764227	0.846154
testis_male_adult_37_years	chr11	102583605	102583636	102583605	-	High_confidence	17	17	40	1.787836	4.565312	chr11	102583338	102583683	DNA|TcMar-Tigger|Tigger3a	+	chr11	102577143	102583607	MMP20|ENST00000542305.1	-	102577143,102579038,102583462	102577426,102579142,102583607	0.750000
testis_male_adult_37_years	chr3	15449993	15449994	15449993	-	High_confidence	10	12	14	0.625742	3.521641	chr3	15449942	15450006	SINE|MIR|MIR3	+	chr3	15439198	15449994	EAF1-AS1|ENST00000609310.3	-	15439198,15441488,15444242,15447683,15449946	15439377,15441669,15444879,15447845,15449994	0.928571
testis_male_adult_37_years	chr19	45632666	45632676	45632675	-	High_confidence	9	9	18	0.804526	3.852169	chr19	45632503	45632628	DNA|hAT-Charlie|Charlie10	-	chr19	45621553	45632662	EML2|ENST00000586902.5	-	45621553,45624718,45626704,45629950,45632520	45621637,45624818,45626839,45630046,45632662	0.777778
testis_male_adult_37_years	chr2	21101560	21101669	21101618	+	RAMPAGE_only	10	11	50	2.234795	4.276364	chr2	21101472	21102081	LTR|ERV1|LTR12C	-	chr2	21123916	21143272	TDRD15|ENST00000405799.1	+	21123916,21127600,21134761,21137464	21124046,21127711,21134847,21143272	0.760000
testis_male_adult_37_years	chr1	1655395	1655411	1655409	-	RAMPAGE_only	34	51	93	4.156718	6.055078	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	STRG.644.21	-	1641771,1641905,1642385,1645125,1649498,1652438,1655368,1657255,1658913	1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1658972	0.967742
testis_male_adult_37_years	chr12	8845788	8845799	8845798	+	High_confidence	5	5	14	0.625742	2.699514	chr12	8845565	8845850	SINE|Alu|AluY	+	chr12	8845282	8848795	A2ML1|ENST00000540049.1	+	8845282,8846076,8847548,8848719	8845502,8846222,8847698,8848795	0.571429
testis_male_adult_37_years	chr14	40629958	40630010	40629958	+	High_confidence	21	23	71	3.173408	5.479512	chr14	40629527	40630203	LTR|ERV1|LTR12C	-	chr14	40629564	40700144	STRG.224624.1	+	40629564,40647775,40699224	40630229,40647894,40700144	0.577465
testis_male_adult_37_years	chr14	50159430	50159441	50159440	-	RAMPAGE_only	8	9	19	0.849222	3.794653	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.947368
testis_male_adult_37_years	chr14	44912163	44912192	44912163	-	High_confidence	4	5	21	0.938614	3.844233	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.952381
testis_male_adult_37_years	chr2	182340831	182340852	182340831	-	RAMPAGE_only	3	3	10	0.446959	2.947703	chr2	182340829	182340956	SINE|MIR|MIR3	+	chr2	182147035	182427031	PDE1A|ENST00000409365.5	-	182147035,182185891,182186467,182188978,182201438,182201687,182205939,182223863,182230005,182231014,182234431,182240109,182264300,182426577	182147152,182186079,182186588,182189060,182201559,182201789,182206065,182223964,182230146,182231131,182234498,182240292,182264414,182427031	0.700000
testis_male_adult_37_years	chr1	241134896	241134929	241134896	-	High_confidence	40	42	130	5.810466	5.970313	chr1	241134778	241135144	LTR|ERV1|MER48	+	chr1	240775569	241135143	STRG.21660.4	-	240775569,240802903,240806139,240811917,240813617,240814715,240816316,240827097,240868586,240868775,240870054,240930716,240936599,240983078,241098665,241134866	240776213,240802993,240806326,240812043,240813728,240814777,240816415,240827172,240868668,240868852,240870119,240930768,240936706,240983129,241098762,241135143	0.700000
testis_male_adult_37_years	chr5	119818497	119818509	119818497	+	High_confidence	8	9	27	1.206789	4.085055	chr5	119818396	119818696	SINE|Alu|AluY	-	chr5	119818722	119818980	STRG.99842.1	+	119818722	119818980	0.703704
testis_male_adult_37_years	chr2	73736756	73736757	73736756	-	High_confidence	14	15	15	0.670438	3.128085	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73731905	73737335	TPRKB|ENST00000470012.1	-	73731905,73732583,73734428,73737301	73732285,73732700,73734591,73737335	0.800000
testis_male_adult_37_years	chr1	95352647	95352672	95352671	-	High_confidence	9	9	18	0.804526	3.499228	chr1	95352645	95352945	LINE|L2|L2a	+	chr1	95351252	95352648	LINC01650|ENST00000650223.1	-	95351252,95352031	95351788,95352648	0.944444
testis_male_adult_37_years	chr7	92244986	92244987	92244986	-	High_confidence	4	5	7	0.312871	2.807355	chr7	92244870	92245026	DNA|hAT-Charlie|MER20B	+	chr7	92200357	92245795	KRIT1|ENST00000412043.6	-	92200357,92201306,92213194,92213891,92214610,92221901,92222821,92225719,92226525,92234448,92234807,92235402,92236412,92237666,92240992,92242033,92244001,92244901,92245426	92200804,92201423,92213401,92213979,92214777,92222053,92222978,92225827,92226682,92234592,92234923,92235646,92236542,92237759,92241152,92242137,92244149,92245171,92245795	1.000000
testis_male_adult_37_years	chr8	12796709	12796728	12796727	-	High_confidence	5	5	9	0.402263	2.750000	chr8	12796147	12797467	LTR|ERV1|LTR12C	+	chr8	12795712	12796692	STRG.142978.1	-	12795712	12796692	0.777778
testis_male_adult_37_years	chr21	31083368	31083404	31083368	-	RAMPAGE_only	7	7	24	1.072701	4.523562	chr21	31083042	31083671	LTR|ERV1|LTR12	-	chr21	31079904	31085241	STRG.280817.3	-	31079904	31085241	0.625000
testis_male_adult_37_years	chr9	84368698	84368723	84368698	-	High_confidence	4	4	14	0.625742	3.700440	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.571429
testis_male_adult_37_years	chr15	33523247	33523259	33523258	+	High_confidence	13	13	23	1.028006	4.175736	chr15	33523024	33523550	LTR|ERV1|LTR12_	+	chr15	33523091	33523938	STRG.233543.2	+	33523091	33523938	0.913043
testis_male_adult_37_years	chr12	126737024	126737066	126737052	+	High_confidence	68	113	371	16.582176	7.064009	chr12	126736798	126737145	LTR|ERVL-MaLR|MLT1K	-	chr12	126737016	126745331	STRG.210324.1	+	126737016,126742739,126744769,126745005	126737156,126743480,126744919,126745331	0.663073
testis_male_adult_37_years	chr8	12796553	12796568	12796553	-	High_confidence	4	4	18	0.804526	3.308271	chr8	12796147	12797467	LTR|ERV1|LTR12C	+	chr8	12795712	12796692	STRG.142978.1	-	12795712	12796692	0.611111
testis_male_adult_37_years	chr1	82776332	82776333	82776332	-	High_confidence	96	97	117	5.229419	4.472795	chr1	82775919	82777347	LTR|ERV1|LTR12C	-	chr1	82775894	82776367	STRG.8232.1	-	82775894	82776367	0.965812
testis_male_adult_37_years	chr5	124725105	124725164	124725141	-	High_confidence	4	4	24	1.072701	4.055958	chr5	124724874	124725417	LINE|L2|L2a	+	chr5	124648262	124725407	STRG.100481.11	-	124648262,124649609,124701013,124724954	124649133,124649697,124701269,124725407	0.916667
testis_male_adult_37_years	chr9	84409296	84409297	84409296	+	High_confidence	65	65	66	2.949929	4.606737	chr9	84408306	84409815	LTR|ERV1|LTR12C	+	chr9	84409254	84445506	STRG.163654.1	+	84409254,84412081,84443458	84409840,84412198,84445506	0.924242
testis_male_adult_37_years	chr11	67483487	67483525	67483524	+	High_confidence	5	8	19	0.849222	3.725481	chr11	67483483	67483576	SINE|5S-Deu-L2|AmnSINE1	+	chr11	67483515	67491108	AIP|NM_001302959.1	+	67483515,67487005,67489266,67490037,67490315,67490787	67483710,67487185,67489455,67490214,67490457,67491108	0.842105
testis_male_adult_37_years	chr3	154889529	154889575	154889569	-	High_confidence	11	11	59	2.637058	4.005393	chr3	154888320	154889804	LTR|ERV1|LTR12C	-	chr3	154878763	154889842	STRG.63852.3	-	154878763,154887328,154888356,154889084	154881578,154887404,154888583,154889842	0.949153
testis_male_adult_37_years	chr7	150034532	150034569	150034532	+	High_confidence	9	9	21	0.938614	4.221928	chr7	150034133	150034733	LTR|ERV1|HERVE-int	-	chr7	150034246	150045092	STRG.140697.6	+	150034246,150041220	150040472,150045092	0.952381
testis_male_adult_37_years	chr4	55486517	55486527	55486517	-	RAMPAGE_only	7	7	16	0.715134	3.373557	chr4	55486051	55487998	LINE|L1|HAL1	-	chr4	55427902	55510027	CLOCK|ENST00000309964.8	-	55427902,55438281,55442431,55443686,55444632,55448778,55449395,55450090,55453053,55453676,55455896,55456217,55458891,55459147,55463684,55470716,55475962,55478814,55479639,55482738,55489373,55509911	55435594,55438537,55442634,55443896,55444785,55448868,55449496,55450232,55453129,55453824,55456003,55456300,55459010,55459261,55463805,55470806,55476054,55478963,55479699,55482828,55489465,55510027	0.687500
testis_male_adult_37_years	chr16	68527876	68527922	68527921	+	High_confidence	7	8	30	1.340877	4.073330	chr16	68526564	68528236	LTR|ERV1|LTR12C	+	chr16	68527846	68558105	STRG.247153.13	+	68527846,68533697,68539757,68557997	68530334,68539429,68539825,68558105	0.966667
testis_male_adult_37_years	chr1	77532075	77532107	77532106	+	High_confidence	58	71	254	11.352756	6.499003	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.909449
testis_male_adult_37_years	chr5	4866475	4866547	4866520	+	High_confidence	5	5	42	1.877227	4.243628	chr5	4866518	4866646	LTR|ERVL-MaLR|MLT1A0	-	chr5	4866374	4868184	STRG.88569.1	+	4866374,4867278	4866587,4868184	0.904762
testis_male_adult_37_years	chr14	73590108	73590109	73590108	-	RAMPAGE_only	166	167	167	7.464214	5.192955	chr14	73589718	73590989	LTR|ERV1|LTR12C	-	chr14	73546984	73592827	STRG.228541.1	-	73546984,73589805	73548514,73592827	0.808383
testis_male_adult_37_years	chr3	149284778	149284779	149284778	+	High_confidence	123	123	148	6.614992	5.080383	chr3	149283837	149285090	LTR|ERV1|LTR12C	+	chr3	149284781	149333653	AC093001.1|ENST00000489011.1	+	149284781,149333503	149285182,149333653	0.905405
testis_male_adult_37_years	chr21	37219379	37219382	37219379	-	RAMPAGE_only	4	4	8	0.357567	2.750000	chr21	37219344	37219485	SINE|MIR|MIR	+	chr21	37218417	37221202	STRG.281922.1	-	37218417	37221202	0.875000
testis_male_adult_37_years	chr1	202448252	202448264	202448263	+	High_confidence	7	8	18	0.804526	3.807764	chr1	202448188	202448294	DNA|DNA|MER126	-	chr1	202448283	202502909	PPP1R12B|ENST00000498070.5	+	202448283,202448988,202488532,202493113,202495292,202495569,202496780,202501858	202448590,202449171,202488623,202493317,202495482,202495682,202496822,202502909	0.833333
testis_male_adult_37_years	chr4	94562604	94562634	94562604	+	RAMPAGE_only	4	4	22	0.983310	4.095795	chr4	94562452	94562686	DNA|hAT-Charlie|Charlie10	+	chr4	94523724	94618152	STRG.78272.13	+	94523724,94573350,94585564,94586407,94618003	94523875,94576034,94585737,94586444,94618152	1.000000
testis_male_adult_37_years	chr5	12574786	12574806	12574786	-	High_confidence	2	2	10	0.446959	2.921928	chr5	12573943	12575033	LTR|ERV1|LTR12C	-	chr5	12529910	12574773	STRG.89887.2	-	12529910,12571815,12574503	12530613,12571904,12574773	1.000000
testis_male_adult_37_years	chr7	147097466	147097495	147097466	-	High_confidence	5	5	12	0.536351	3.418296	chr7	147097348	147097711	LTR|ERVL-MaLR|THE1B	-	chr7	147080933	147097609	AC006004.1|ENST00000434887.1	-	147080933,147082539,147085692,147097431	147082088,147083221,147085822,147097609	0.750000
testis_male_adult_37_years	chrX	103517451	103517475	103517474	-	High_confidence	537	593	845	37.768028	7.552245	chrX	103517347	103517455	SINE|MIR|MIR3	-	chrX	103492002	103517484	STRG.294661.5	-	103492002,103502758	103500872,103517484	0.523077
testis_male_adult_37_years	chr5	27436406	27436421	27436406	-	High_confidence	2	2	8	0.357567	2.750000	chr5	27436276	27436612	LTR|ERV1|LTR31	-	chr5	27412612	27436411	AC113355.1|ENST00000510512.1	-	27412612,27423500,27428159,27436152	27412689,27423601,27428213,27436411	1.000000
testis_male_adult_37_years	chr12	45610561	45610620	45610619	-	High_confidence	11	12	26	1.162093	3.918296	chr12	45610596	45610900	SINE|Alu|AluSx	+	chr12	45481870	45610590	AC079950.1|ENST00000551229.2	-	45481870,45518317,45519053,45600663,45610538	45482071,45518411,45519153,45600784,45610590	0.807692
testis_male_adult_37_years	chr5	88439085	88439102	88439085	-	High_confidence	4	4	9	0.402263	2.947703	chr5	88438906	88439270	LTR|ERVL-MaLR|MLT1A0	-	chr5	88408981	88439090	LINC02060|ENST00000506041.2	-	88408981,88426501,88429358,88429780,88435979,88438984	88409945,88426793,88429488,88429850,88436043,88439090	0.666667
testis_male_adult_37_years	chr15	65300634	65300635	65300634	-	High_confidence	1945	1973	2026	90.553876	5.394934	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65258135	65300627	STRG.236890.4	-	65258135,65260884,65263148,65266561,65270934,65300198	65259542,65261026,65263320,65266768,65271072,65300627	0.900296
testis_male_adult_37_years	chr20	10909253	10909272	10909253	-	High_confidence	3	3	14	0.625742	3.546594	chr20	10909001	10909373	LTR|ERVL-MaLR|MLT1J2	+	chr20	10875332	10909272	LOC101929413|NR_109866.1	-	10875332,10878323,10893964,10894615,10896014,10897105,10908965	10876230,10878373,10894020,10894862,10896400,10897167,10909272	0.571429
testis_male_adult_37_years	chr5	894588	894598	894597	+	High_confidence	3	4	10	0.446959	2.846439	chr5	894447	894691	SINE|MIR|MIR	-	chr5	893641	908074	TRIP13|ENST00000513435.1	+	893641,894786,896664,900493,901340,904147,907129,907987	893720,894952,896794,900549,901431,904220,907193,908074	0.900000
testis_male_adult_37_years	chr1	203799516	203799524	203799523	+	High_confidence	8	9	13	0.581047	3.251629	chr1	203799077	203799888	DNA|hAT-Ac|OldhAT1	+	chr1	203799334	203854118	ZBED6|ENST00000545588.5	+	203799334,203816925,203818569,203828298,203829450,203829779,203830122,203831660,203833790,203837965,203840305,203847183,203848330,203849710,203850514,203851056,203852140	203803016,203817124,203818689,203828422,203829654,203829896,203830203,203831771,203833853,203838064,203840374,203847687,203848407,203850026,203850681,203851124,203854118	0.923077
testis_male_adult_37_years	chr4	93195970	93195975	93195970	+	RAMPAGE_only	5	6	11	0.491655	2.921928	chr4	93195911	93196690	LTR|Gypsy|MamGypsy2-I	-	chr4	93203948	93238421	GRID2|ENST00000512631.1	+	93203948,93207403,93216737,93224613,93238370	93204086,93207457,93216911,93224775,93238421	0.545455
testis_male_adult_37_years	chr13	74552842	74552850	74552842	+	High_confidence	99	100	174	7.777085	6.655745	chr13	74552819	74552976	LTR|ERVL-MaLR|MLT1J-int	+	chr13	74552842	74557120	LINC00347|NR_034025.1	+	74552842,74554656,74555224	74552903,74554760,74557120	0.948276
testis_male_adult_37_years	chr6	28528316	28528351	28528330	+	High_confidence	3	3	11	0.491655	2.921928	chr6	28528263	28528443	SINE|MIR|MIR3	-	chr6	28528330	28533979	GPX5|ENST00000483784.1	+	28528330,28529450,28532320,28533960	28528608,28529604,28532420,28533979	0.545455
testis_male_adult_37_years	chr11	123797502	123797537	123797502	+	High_confidence	9	11	55	2.458274	4.687924	chr11	123796966	123797634	LTR|ERV1|LTR76	-	chr11	123797473	123819108	STRG.195493.2	+	123797473,123816990	123797992,123819108	0.927273
testis_male_adult_37_years	chr4	140463246	140463252	140463246	-	RAMPAGE_only	4	4	10	0.446959	2.921928	chr4	140462809	140463526	LINE|L1|L1PBa	+	chr4	140443435	140498222	MGAT4D|ENST00000511113.5	-	140443435,140451409,140456588,140459511,140461928,140464895,140471774,140474812,140479489,140482326,140498128	140443444,140451517,140456719,140459626,140462004,140465009,140471821,140474946,140479627,140482485,140498222	0.900000
testis_male_adult_37_years	chr6	3720076	3720077	3720076	-	High_confidence	675	675	876	39.153601	5.840306	chr6	3719558	3721329	LTR|ERV1|LTR12C	-	chr6	3712099	3720065	STRG.106993.1	-	3712099	3720065	0.974886
testis_male_adult_37_years	chr20	53608912	53608916	53608912	-	High_confidence	5	5	11	0.491655	3.121928	chr20	53608733	53608922	SINE|MIR|MIR	+	chr20	53582541	53608892	ZNF217|ENST00000431687.5	-	53582541,53608353,53608831	53583168,53608444,53608892	0.636364
testis_male_adult_37_years	chr4	2083029	2083043	2083029	-	High_confidence	7	7	25	1.117397	3.990602	chr4	2082767	2083531	LINE|L1|L1MEc	-	chr4	2081109	2083010	POLN|ENST00000508568.1	-	2081109,2081632,2082680	2081158,2081743,2083010	0.880000
testis_male_adult_37_years	chr3	188947224	188947237	188947236	+	High_confidence	21	21	46	2.056011	4.238378	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.782609
testis_male_adult_37_years	chr4	2763163	2763224	2763201	+	High_confidence	3	3	19	0.849222	3.947703	chr4	2762353	2763411	LTR|ERV1|LTR12E	-	chr4	2763068	2764893	STRG.69619.1	+	2763068,2763739	2763573,2764893	0.894737
testis_male_adult_37_years	chr13	89884176	89884216	89884195	+	High_confidence	4	4	30	1.340877	4.418157	chr13	89882945	89884388	LTR|ERV1|LTR12C	-	chr13	89883753	89886272	STRG.219154.1	+	89883753	89886272	0.566667
testis_male_adult_37_years	chr8	49512221	49512242	49512221	-	High_confidence	17	17	55	2.458274	4.703465	chr8	49511392	49512268	LINE|L1|L1M4	-	chr8	49496762	49512180	AC090155.2|ENST00000518854.1	-	49496762,49512126	49496975,49512180	0.927273
testis_male_adult_37_years	chr3	110730050	110730070	110730050	-	RAMPAGE_only	3	3	8	0.357567	3.000000	chr3	110729998	110730349	LTR|ERV1|MER61A	+	chr3	110638351	110667405	STRG.58952.1	-	110638351,110640583,110667190	110638593,110640706,110667405	0.500000
testis_male_adult_37_years	chr5	124711699	124711742	124711721	-	High_confidence	13	13	72	3.218104	5.874962	chr5	124711630	124711684	LINE|L2|L2c	-	chr5	124648262	124712046	STRG.100481.9	-	124648262,124649609,124651599,124701013,124711617	124649133,124649697,124652298,124701269,124712046	0.722222
testis_male_adult_37_years	chr1	184539909	184539922	184539921	+	RAMPAGE_only	3	3	7	0.312871	2.584963	chr1	184539688	184540056	LTR|ERVL-MaLR|MLT1I	+	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.714286
testis_male_adult_37_years	chr12	125151484	125151531	125151511	+	RAMPAGE_only	10	10	57	2.547666	5.328418	chr12	125151350	125151616	LTR|ERVL-MaLR|MLT1K	-	chr12	125150334	125349978	STRG.211197.3	+	125150334,125151337,125153919,125349451	125150585,125151821,125154124,125349978	0.754386
testis_male_adult_37_years	chr9	89210335	89210336	89210335	+	High_confidence	322	324	340	15.196603	5.143458	chr9	89209221	89210751	LTR|ERV1|LTR12C	+	chr9	89210326	89211104	STRG.164056.1	+	89210326	89211104	0.988235
testis_male_adult_37_years	chr1	170722576	170722603	170722576	+	High_confidence	9	10	31	1.385573	3.833071	chr1	170722388	170722618	LINE|L2|L2c	-	chr1	170722616	170736399	PRRX1|ENST00000476867.6	+	170722616,170726219,170736047	170722668,170726401,170736399	0.870968
testis_male_adult_37_years	chr3	112302481	112302489	112302483	+	High_confidence	15	18	29	1.296181	4.789015	chr3	112302478	112303209	LTR|ERV1|HERV3-int	+	chr3	112302477	112332791	AC112487.1|ENST00000498032.5	+	112302477,112326521,112327610,112329345,112332185	112302714,112326650,112327694,112329386,112332791	0.517241
testis_male_adult_37_years	chr9	133414240	133414247	133414246	-	RAMPAGE_only	13	13	27	1.206789	3.913270	chr9	133414068	133414234	SINE|Alu|AluJb	-	chr9	133411003	133417954	REXO4|ENST00000494045.5	-	133411003,133412298,133412777,133417619	133411073,133412492,133412921,133417954	0.740741
testis_male_adult_37_years	chr5	29295896	29295931	29295896	-	High_confidence	23	23	42	1.877227	4.369032	chr5	29295500	29296998	LTR|ERV1|LTR12C	-	chr5	29295492	29295969	STRG.91771.1	-	29295492	29295969	0.809524
testis_male_adult_37_years	chr2	227164620	227164621	227164620	+	High_confidence	15	15	20	0.893918	3.997670	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.600000
testis_male_adult_37_years	chr3	7281781	7281782	7281781	+	RAMPAGE_only	7	7	11	0.491655	2.846439	chr3	7281798	7282100	SINE|Alu|AluSx	+	chr3	7298576	7415164	GRM7|ENST00000461677.6	+	7298576,7306497,7415022	7298825,7306652,7415164	0.545455
testis_male_adult_37_years	chr5	147382877	147382900	147382883	+	High_confidence	44	48	176	7.866477	4.753358	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.943182
testis_male_adult_37_years	chr13	68281562	68281563	68281562	-	High_confidence	114	117	120	5.363507	5.468524	chr13	68281145	68281842	LTR|ERV1|LTR12_	-	chr13	68280912	68281547	STRG.216607.1	-	68280912	68281547	0.941667
testis_male_adult_37_years	chr15	52569721	52569722	52569721	-	High_confidence	12	12	16	0.715134	3.773557	chr15	52569688	52569809	LINE|L2|L2	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	0.750000
testis_male_adult_37_years	chr1	180085579	180085604	180085603	+	High_confidence	35	35	104	4.648373	3.482957	chr1	180085591	180085806	LINE|CR1|L3	-	chr1	180085603	180111192	CEP350|ENST00000490141.5	+	180085603,180087164,180087577,180090713,180092613,180095522,180096037,180098862,180110996	180085928,180087288,180087717,180090796,180094616,180095930,180096184,180098985,180111192	0.951923
testis_male_adult_37_years	chr1	114853744	114853772	114853771	+	RAMPAGE_only	3	3	8	0.357567	2.750000	chr1	114853575	114853887	SINE|Alu|AluSz	-	chr1	114854802	114995370	SYCP1|NM_001282541.1	+	114854802,114855437,114856572,114857231,114857443,114858546,114859742,114860735,114874505,114876068,114876736,114878093,114885534,114886124,114887625,114895447,114910396,114911478,114913032,114913974,114923448,114926277,114926500,114944338,114944871,114946288,114947245,114977556,114981335,114984724,114994697,114994881	114855018,114855572,114856657,114857275,114857497,114858711,114859810,114860809,114874564,114876138,114876810,114878202,114885629,114886309,114887693,114895509,114910501,114911582,114913150,114914045,114923530,114926340,114926563,114944455,114944982,114946381,114947320,114977616,114981512,114984868,114994787,114995370	0.500000
testis_male_adult_37_years	chr4	158200459	158200460	158200459	-	High_confidence	9	9	9	0.402263	2.947703	chr4	158200071	158200486	LTR|ERVL-MaLR|MSTB1	+	chr4	158199104	158200442	AC098679.1|ENST00000513067.1	-	158199104,158200323	158199350,158200442	1.000000
testis_male_adult_37_years	chr6	45576748	45576761	45576748	-	High_confidence	18	20	40	1.787836	5.060918	chr6	45576627	45576792	SINE|MIR|MIRc	+	chr6	45566055	45577015	STRG.113139.2	-	45566055,45573378,45576026	45567687,45574446,45577015	0.975000
testis_male_adult_37_years	chr14	94581617	94581620	94581619	+	High_confidence	10	19	24	1.072701	3.938722	chr14	94581654	94581760	SINE|MIR|MIRb	+	chr14	94581614	94593115	SERPINA5|ENST00000554276.1	+	94581614,94587345,94590040,94590748,94592056	94581710,94587981,94590311,94590896,94593115	1.000000
testis_male_adult_37_years	chr13	57286660	57286718	57286705	+	High_confidence	5	5	26	1.162093	4.133661	chr13	57285459	57287161	LTR|ERV1|LTR12C	-	chr13	57286475	57725293	STRG.215802.1	+	57286475,57469520,57629814,57666467,57666660,57724611	57287202,57469621,57635111,57666526,57666833,57725293	0.769231
testis_male_adult_37_years	chr3	125123615	125123618	125123615	-	High_confidence	6	12	17	0.759830	3.852169	chr3	125123512	125123811	LTR|ERVL-MaLR|THE1B	-	chr3	125083810	125123606	SLC12A8|ENST00000483944.5	-	125083810,125088309,125091438,125092100,125107480,125110188,125118768,125120598,125123529	125084052,125088370,125091556,125092198,125107631,125110335,125118856,125120686,125123606	0.529412
testis_male_adult_37_years	chr8	69626959	69626994	69626993	+	High_confidence	3	3	10	0.446959	2.921928	chr8	69625370	69627029	LTR|ERV1|LTR12C	-	chr8	69627803	69660051	SULF1|ENST00000531512.5	+	69627803,69628170,69629503,69638734,69640807,69658504	69627866,69628236,69629679,69638858,69640841,69660051	0.700000
testis_male_adult_37_years	chr5	149331888	149331926	149331923	+	RAMPAGE_only	35	38	91	4.067326	5.705666	chr5	149331910	149332114	LTR|ERVL-MaLR|MLT1K	-	chr5	149315639	149341802	AFAP1L1|ENST00000513665.1	+	149315639,149316150,149317728,149319581,149320390,149322605,149329665,149332694,149335593,149340006	149315914,149316303,149317940,149319727,149320463,149322717,149329830,149332873,149335722,149341802	0.956044
testis_male_adult_37_years	chr2	107826794	107826836	107826820	-	High_confidence	28	28	167	7.464214	6.583656	chr2	107826465	107826780	SINE|Alu|AluSx1	-	chr2	107824112	107826836	STRG.34161.1	-	107824112,107824560,107825668,107826680	107824185,107824743,107826126,107826836	0.796407
testis_male_adult_37_years	chr22	40843011	40843025	40843011	-	RAMPAGE_only	8	8	25	1.117397	4.142915	chr22	40842870	40843130	SINE|Alu|AluJr	+	chr22	40830874	40844890	ST13|ENST00000413424.5	-	40830874,40832086,40832568,40835559,40835802,40840625,40844838	40830956,40832216,40832671,40835670,40835887,40840692,40844890	0.840000
testis_male_adult_37_years	chr2	11681424	11681437	11681436	+	RAMPAGE_only	3	3	10	0.446959	2.725481	chr2	11681255	11681626	LTR|ERVL-MaLR|MSTA	+	chr2	11677594	11824887	LPIN1|ENST00000449576.6	+	11677594,11713755,11765532,11767762,11771371,11773619,11776085,11779518,11782200,11783828,11784885,11787073,11788386,11791913,11795407,11802906,11804422,11805069,11815087,11819483,11820410,11824631	11677728,11713812,11765733,11767858,11771679,11773745,11776193,11779645,11782507,11783922,11785076,11787167,11788456,11792006,11795487,11803033,11804571,11805156,11815240,11819598,11820514,11824887	0.700000
testis_male_adult_37_years	chr1	11609505	11609506	11609505	+	High_confidence	304	307	339	15.151907	4.808489	chr1	11608568	11609920	LTR|ERV1|LTR12C	+	chr1	11609530	11613355	LINC01647|ENST00000453135.1	+	11609530,11611842,11612789	11610113,11611978,11613355	0.991150
testis_male_adult_37_years	chr14	68882874	68882880	68882879	-	High_confidence	4	5	8	0.357567	2.521641	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.875000
testis_male_adult_37_years	chr5	172816607	172816630	172816607	+	High_confidence	47	48	83	3.709759	5.876766	chr5	172816337	172816632	LINE|L2|L2b	-	chr5	172816620	172819958	AC110011.1|ENST00000518260.1	+	172816620,172819481	172816725,172819958	0.650602
testis_male_adult_37_years	chr17	70129057	70129064	70129057	+	High_confidence	5	5	10	0.446959	3.321928	chr17	70128761	70129144	LTR|ERV1|MER48	-	chr17	70129009	70129317	STRG.256951.1	+	70129009	70129317	0.500000
testis_male_adult_37_years	chr1	204140041	204140091	204140061	-	RAMPAGE_only	12	13	34	1.519660	4.093139	chr1	204139662	204140016	DNA|TcMar-Tigger|Tigger3a	-	chr1	204131955	204141262	ETNK2|ENST00000367197.5	-	204131955,204134514,204137103,204140034,204141024	204132256,204134588,204137249,204140118,204141262	0.794118
testis_male_adult_37_years	chr12	19404030	19404045	19404031	+	High_confidence	10	15	31	1.385573	4.825164	chr12	19403969	19404613	LINE|L1|L1PBb	-	chr12	19404065	19518192	AEBP2|ENST00000541908.5	+	19404065,19462509,19473247,19493799,19500096,19512397,19514670,19518086	19404124,19462717,19473355,19493986,19500221,19512465,19514784,19518192	0.677419
testis_male_adult_37_years	chr6	152640720	152640738	152640720	+	RAMPAGE_only	6	6	12	0.536351	3.459432	chr6	152640563	152640929	LTR|ERVL-MaLR|MLT1A0	+	chr6	152697894	152724582	MYCT1|NM_025107.2	+	152697894,152721741	152698098,152724582	0.500000
testis_male_adult_37_years	chr12	15348674	15348703	15348674	-	High_confidence	5	5	21	0.938614	4.297079	chr12	15348476	15348800	SINE|Alu|AluYe5	+	chr12	15346476	15348675	RERG|ENST00000437578.2	-	15346476,15348262	15346625,15348675	0.714286
testis_male_adult_37_years	chr11	94730969	94730988	94730982	+	High_confidence	16	17	34	1.519660	4.413910	chr11	94730932	94730983	SINE|MIR|MIR3	-	chr11	94730993	94876748	STRG.191992.2	+	94730993,94740937,94795010,94799389,94821529,94830049,94831451,94850113,94853932,94859524,94864734,94865941,94869197,94870688	94731156,94740988,94795160,94800311,94821821,94830194,94831541,94850259,94854082,94859715,94864860,94866168,94869473,94876748	0.882353
testis_male_adult_37_years	chr15	39894670	39894692	39894691	-	High_confidence	2	2	6	0.268175	2.584963	chr15	39893097	39895275	Retroposon|SVA|SVA_F	-	chr15	39801823	39894527	GPR176|ENST00000560729.1	-	39801823,39807005,39860819,39862076,39862327,39894455	39802254,39807258,39860922,39862160,39862419,39894527	0.666667
testis_male_adult_37_years	chr7	18851387	18851391	18851390	+	High_confidence	13	13	28	1.251485	4.066109	chr7	18851203	18851570	LTR|ERVL-MaLR|THE1D	+	chr7	18851399	18996343	HDAC9|ENST00000496026.1	+	18851399,18874477,18935808,18954145,18975805,18996022	18851452,18874596,18935942,18954230,18975953,18996343	0.928571
testis_male_adult_37_years	chr2	50324642	50324654	50324642	+	High_confidence	3	3	9	0.402263	2.750000	chr2	50324530	50324708	SINE|Alu|AluYc	-	chr2	50324642	50345598	AC068725.1|ENST00000649515.1	+	50324642,50335908,50344624	50324712,50336081,50345598	0.555556
testis_male_adult_37_years	chr9	78442848	78442849	78442848	+	High_confidence	78	78	82	3.665063	4.881225	chr9	78441895	78443294	LTR|ERV1|LTR12C	+	chr9	78442533	78444575	STRG.162723.1	+	78442533,78444520	78443986,78444575	0.951220
testis_male_adult_37_years	chr12	55035714	55035719	55035718	-	High_confidence	19	19	32	1.430269	4.773557	chr12	55035324	55035735	LINE|L2|L2b	+	chr12	55029221	55035780	STRG.202818.1	-	55029221,55034669,55035419	55029320,55034792,55035780	0.531250
testis_male_adult_37_years	chr1	156343608	156343613	156343608	-	RAMPAGE_only	88	90	149	6.659688	4.914064	chr1	156343389	156343676	LTR|ERVL-MaLR|MLT1K	-	chr1	156308967	156338465	CCT3|ENST00000295688.7	-	156308967,156310557,156310949,156312040,156317165,156317414,156318867,156320838,156324971,156333546,156334712,156334867,156335826,156338153	156309303,156310689,156311195,156312221,156317247,156317547,156319017,156321025,156325089,156333643,156334775,156334918,156335888,156338465	0.939597
testis_male_adult_37_years	chr7	26638303	26638356	26638355	+	High_confidence	7	7	27	1.206789	4.458591	chr7	26638161	26638531	LTR|ERVL-MaLR|THE1C	+	chr7	26638456	26647305	C7orf71|ENST00000614528.3	+	26638456,26640695,26646299	26639344,26640764,26647305	0.703704
testis_male_adult_37_years	chr9	95127451	95127497	95127451	-	High_confidence	5	5	15	0.670438	3.640224	chr9	95127352	95127591	DNA|hAT-Charlie|MER1B	-	chr9	95114134	95127420	FANCC|ENST00000464653.1	-	95114134,95117314,95125085,95126528	95114710,95117390,95125185,95127420	0.733333
testis_male_adult_37_years	chr13	46466005	46466006	46466005	-	High_confidence	9	9	9	0.402263	3.169925	chr13	46465839	46466098	LTR|ERV1|HERVE-int	+	chr13	46460647	46466006	LINC01198|ENST00000594428.6	-	46460647,46464674,46465842	46461170,46464819,46466006	0.666667
testis_male_adult_37_years	chr13	54799794	54799821	54799799	+	High_confidence	14	14	50	2.234795	4.916566	chr13	54799141	54800235	LTR|ERV1|LTR12E	-	chr13	54798936	54801623	STRG.215200.1	+	54798936,54800654	54800259,54801623	0.940000
testis_male_adult_37_years	chr18	65564964	65565004	65565003	-	High_confidence	6	6	19	0.849222	3.725481	chr18	65564665	65565321	LTR|ERV1|LTR12	-	chr18	65563426	65565465	STRG.263331.1	-	65563426	65565465	0.842105
testis_male_adult_37_years	chr18	51218298	51218334	51218325	-	High_confidence	107	107	634	28.337195	5.230675	chr18	51218274	51218543	DNA|TcMar-Tigger|Tigger16b	+	chr18	51176820	51218304	MEX3C|ENST00000591040.1	-	51176820,51218261	51177576,51218304	0.970032
testis_male_adult_37_years	chr4	42267009	42267010	42267009	+	RAMPAGE_only	86	86	89	3.977934	5.289653	chr4	42265755	42267319	LTR|ERV1|LTR12C	+	chr4	42151027	42268110	AC111006.1|ENST00000645181.1	+	42151027,42210373,42238693,42250920,42259811,42264124,42267068	42151563,42210484,42238898,42251218,42259882,42264185,42268110	0.820225
testis_male_adult_37_years	chr14	28830242	28830264	28830259	+	High_confidence	17	17	93	4.156718	5.991636	chr14	28830132	28830430	SINE|Alu|AluY	-	chr14	28830249	29021603	STRG.223264.1	+	28830249,28832005,28837252,28929939,28986399,29007680,29018952,29021279	28830502,28832060,28837330,28929994,28986536,29007854,29019087,29021603	0.752688
testis_male_adult_37_years	chr3	117609279	117609306	117609281	-	RAMPAGE_only	15	25	45	2.011315	4.415883	chr3	117609058	117609626	LTR|ERV1|LTR12	-	chr3	117605817	117613342	STRG.59492.1	-	117605817	117613342	0.955556
testis_male_adult_37_years	chr3	125061445	125061484	125061483	+	High_confidence	9	10	31	1.385573	4.631616	chr3	125060193	125061692	LINE|L2|L2b	-	chr3	125061322	125064158	STRG.60673.1	+	125061322,125061870	125061523,125064158	0.967742
testis_male_adult_37_years	chr4	106389712	106389733	106389732	+	RAMPAGE_only	3	3	6	0.268175	2.584963	chr4	106389594	106389773	LTR|ERVL-MaLR|MSTA	-	chr4	106433623	106453448	LINC02173|ENST00000504132.1	+	106433623,106434611,106449010,106453225	106433754,106434701,106449087,106453448	0.666667
testis_male_adult_37_years	chr6	158810410	158810431	158810410	-	RAMPAGE_only	5	6	12	0.536351	3.418296	chr6	158810364	158810539	LINE|L2|L2c	+	chr6	158765740	158818227	EZR|ENST00000337147.11	-	158765740,158767260,158769325,158769783,158770763,158771243,158776407,158783519,158784643,158785308,158787107,158789287,158818081	158767078,158767512,158769418,158769944,158770894,158771407,158776504,158783666,158784727,158785583,158787203,158789371,158818227	0.916667
testis_male_adult_37_years	chr6	80084739	80084754	80084739	-	High_confidence	5	5	14	0.625742	3.324863	chr6	80084661	80084792	DNA|hAT-Charlie|MER5A	-	chr6	80079512	80084782	STRG.115558.1	-	80079512,80083556,80084320	80079659,80083686,80084782	0.928571
testis_male_adult_37_years	chr5	93454597	93454620	93454619	-	RAMPAGE_only	3	3	8	0.357567	2.521641	chr5	93454400	93455152	LTR|ERVL|MER21C	+	chr5	93411017	93438737	NR2F1-AS1|ENST00000606188.1	-	93411017,93438702	93411509,93438737	0.750000
testis_male_adult_37_years	chr1	110412963	110412970	110412963	+	High_confidence	4	4	9	0.402263	2.947703	chr1	110412810	110412985	SINE|MIR|MIRb	+	chr1	110412992	110422024	LAMTOR5-AS1|ENST00000444238.6	+	110412992,110414151,110416008,110418246,110421634	110413094,110414231,110416188,110418375,110422024	0.555556
testis_male_adult_37_years	chr13	105730397	105730428	105730427	+	High_confidence	6	7	18	0.804526	3.499228	chr13	105730231	105730538	LINE|L2|L2	-	chr13	105729500	105731708	LINC00343|ENST00000414368.2	+	105729500,105730314,105731447	105729959,105730458,105731708	0.722222
testis_male_adult_37_years	chr16	89958341	89958353	89958341	+	High_confidence	4	4	9	0.402263	3.000000	chr16	89958222	89958381	LTR|ERVL-MaLR|MLT1K	-	chr16	89958350	89959365	DEF8|ENST00000562044.1	+	89958350,89959013	89958533,89959365	0.777778
testis_male_adult_37_years	chr17	63354791	63354792	63354791	+	High_confidence	4	4	7	0.312871	2.807355	chr17	63354777	63354847	LINE|RTE-BovB|MamRTE1	-	chr17	63355054	63391757	TANC2|ENST00000583545.1	+	63355054,63379717,63388634,63389307	63355390,63379826,63388757,63391757	0.857143
testis_male_adult_37_years	chr5	777910	777918	777916	+	High_confidence	14	17	34	1.519660	4.150159	chr5	777028	778057	LTR|ERV1|LTR12D	-	chr5	777490	779789	STRG.88617.1	+	777490	779789	0.970588
testis_male_adult_37_years	chr16	64343945	64343970	64343963	+	RAMPAGE_only	14	15	84	3.754455	5.580875	chr16	64343711	64345204	LTR|ERV1|LTR12C	+	chr16	64342649	64602091	STRG.246434.1	+	64342649,64343505,64364778,64475688,64479074,64600138	64342732,64344392,64364896,64475815,64479185,64602091	0.773810
testis_male_adult_37_years	chr16	67571179	67571206	67571179	+	High_confidence	3	4	10	0.446959	2.646439	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	1.000000
testis_male_adult_37_years	chr4	145340456	145340478	145340466	-	High_confidence	4	4	16	0.715134	3.577820	chr4	145340419	145340735	LTR|ERV1|MER61B	+	chr4	145335262	145340421	LINC02266|ENST00000610239.1	-	145335262,145337200,145338964,145340360	145336119,145337313,145339084,145340421	0.625000
testis_male_adult_37_years	chr14	51926626	51926677	51926676	-	RAMPAGE_only	16	20	49	2.190099	4.823794	chr14	51926562	51926893	LTR|ERV1|MER61A	+	chr14	51916144	51918571	AL358333.2|ENST00000556834.1	-	51916144,51917333,51918548	51916507,51917476,51918571	0.775510
testis_male_adult_37_years	chr4	41385789	41385790	41385789	+	High_confidence	9	13	14	0.625742	3.182006	chr4	41385742	41385878	LINE|RTE-BovB|MamRTE1	+	chr4	41385802	41613534	LIMCH1|ENST00000511424.5	+	41385802,41494535,41524408,41598919,41603874,41605893,41613465	41385894,41494606,41524478,41599026,41603905,41606004,41613534	0.571429
testis_male_adult_37_years	chr8	53523839	53523896	53523890	-	High_confidence	11	11	49	2.190099	5.123426	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.816327
testis_male_adult_37_years	chr11	2972318	2972355	2972354	-	RAMPAGE_only	3	3	10	0.446959	2.646439	chr11	2972339	2972686	LINE|L1|L1M5	+	chr11	2971449	2989268	NAP1L4|ENST00000530064.5	-	2971449,2972101,2976023,2978283,2979206,2983745,2989128	2971534,2972243,2976123,2978342,2979237,2983813,2989268	0.700000
testis_male_adult_37_years	chr1	95991988	95992062	95992025	+	High_confidence	49	51	225	10.056576	5.418940	chr1	95991930	95992507	LINE|L2|L2a	-	chr1	95992025	96022781	AC099566.1|ENST00000625774.2	+	95992025,96022532	95992509,96022781	0.928889
testis_male_adult_37_years	chr13	30996284	30996285	30996284	-	High_confidence	8	8	11	0.491655	2.646439	chr13	30996171	30996593	LTR|ERVL-MaLR|MSTB	+	chr13	30995161	30996138	LINC01066|ENST00000415283.1	-	30995161,30996053	30995475,30996138	0.727273
testis_male_adult_37_years	chr2	159428333	159428357	159428356	-	RAMPAGE_only	16	18	39	1.743140	4.736216	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.717949
testis_male_adult_37_years	chr22	25900997	25901064	25900997	-	High_confidence	5	6	25	1.117397	4.403856	chr22	25900893	25901010	SINE|MIR|MIRb	+	chr22	25892436	25901016	Z98949.1|ENST00000608115.5	-	25892436,25898383,25899715,25900678	25892640,25898441,25899884,25901016	0.640000
testis_male_adult_37_years	chr14	104750832	104750833	104750832	-	RAMPAGE_only	54	54	65	2.905233	4.811283	chr14	104750447	104752026	LTR|ERV1|LTR12C	-	chr14	104749935	104752213	STRG.231466.1	-	104749935,104751418	104751141,104752213	0.892308
testis_male_adult_37_years	chr6	95519365	95519402	95519375	-	High_confidence	11	13	47	2.100707	4.683797	chr6	95518594	95520168	LTR|ERV1|LTR2752	-	chr6	95484911	95519578	STRG.117149.1	-	95484911,95514090,95519346	95485548,95514144,95519578	0.553191
testis_male_adult_37_years	chr19	20751557	20751578	20751577	-	RAMPAGE_only	4	4	9	0.402263	2.500000	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746922	20755250	AC010329.1|ENST00000593903.1	-	20746922	20755250	0.888889
testis_male_adult_37_years	chr1	234676408	234676442	234676408	+	RAMPAGE_only	3	3	9	0.402263	2.750000	chr1	234675974	234676570	LINE|L1|L1ME3A	+	chr1	234674095	234683176	AL160408.1|ENST00000453568.1	+	234674095,234680810,234682691	234674126,234680925,234683176	0.777778
testis_male_adult_37_years	chr11	65430452	65430816	65430775	+	RAMPAGE_only	33	36	328	14.660252	5.441995	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
testis_male_adult_37_years	chr1	153422615	153422628	153422627	-	High_confidence	12	12	42	1.877227	4.580130	chr1	153422593	153422644	SINE|Alu|Alu	-	chr1	153390031	153422583	S100A8|NM_001319198.1	-	153390031,153390394,153422517	153390243,153390557,153422583	0.738095
testis_male_adult_37_years	chr9	114379331	114379349	114379342	-	RAMPAGE_only	8	10	32	1.430269	4.825164	chr9	114379137	114379388	SINE|MIR|MIRb	+	chr9	114336164	114377635	AKNA|ENST00000374075.9	-	114336164,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377635	0.843750
testis_male_adult_37_years	chr14	55671844	55671876	55671875	+	High_confidence	7	7	39	1.743140	4.837148	chr14	55671902	55672073	DNA|hAT-Charlie|MER5A	+	chr14	55671314	55684579	KTN1|ENST00000556631.1	+	55671314,55678351,55679564,55684098	55675918,55678444,55679685,55684579	0.974359
testis_male_adult_37_years	chr10	84572171	84572172	84572171	+	High_confidence	80	81	87	3.888543	5.359829	chr10	84571017	84572588	LTR|ERV1|LTR12C	+	chr10	84572155	84574810	STRG.177334.1	+	84572155,84574395	84572759,84574810	0.965517
testis_male_adult_37_years	chr4	178037978	178038012	178037978	-	High_confidence	5	5	13	0.581047	3.584963	chr4	178037446	178038169	LTR|ERVL|LTR62	+	chr4	178021220	178038603	STRG.86963.1	-	178021220,178038392	178021503,178038603	0.615385
testis_male_adult_37_years	chr2	113888613	113888628	113888613	-	RAMPAGE_only	4	4	11	0.491655	2.721928	chr2	113888267	113888732	LINE|L2|L2b	+	chr2	113888202	113889750	AC110769.2|ENST00000602760.1	-	113888202	113889750	0.727273
testis_male_adult_37_years	chr2	127765174	127765175	127765174	-	RAMPAGE_only	12	12	12	0.536351	3.251629	chr2	127765110	127765160	LINE|CR1|L3	-	chr2	127701021	127811147	WDR33|ENST00000322313.8	-	127701021,127708676,127709489,127709692,127713582,127717154,127719264,127721835,127722590,127722957,127723252,127724332,127724886,127725060,127726650,127763061,127764827,127765173,127768188,127768932,127770777,127811011	127706552,127708892,127709582,127709856,127714021,127717263,127720353,127721988,127722730,127723044,127723347,127724443,127724965,127725215,127726777,127763159,127764979,127765269,127768293,127769001,127771004,127811147	0.583333
testis_male_adult_37_years	chr6	149614206	149614268	149614206	-	RAMPAGE_only	4	4	35	1.564356	4.657882	chr6	149614121	149614472	LINE|L1|L1M4c	+	chr6	149597129	149623111	KATNA1|ENST00000494504.5	-	149597129,149597506,149598223,149601593,149603267,149604660,149623102	149597189,149597641,149598350,149601799,149603373,149604782,149623111	0.657143
testis_male_adult_37_years	chr7	87216908	87216927	87216926	-	High_confidence	3	4	11	0.491655	3.321928	chr7	87216894	87217046	SINE|MIR|MIRb	+	chr7	87196599	87216921	TMEM243|ENST00000481425.5	-	87196599,87197940,87199006,87216739	87196758,87198045,87199057,87216921	0.909091
testis_male_adult_37_years	chr5	78251479	78251526	78251525	-	RAMPAGE_only	3	3	14	0.625742	3.664498	chr5	78251258	78253343	LINE|L1|L1MA1	+	chr5	78002325	78294692	AP3B1|ENST00000519295.5	-	78002325,78015409,78020691,78034360,78039042,78089392,78100952,78110206,78113751,78116125,78128029,78129120,78141142,78156257,78162818,78165609,78175625,78175783,78177338,78181506,78216054,78225541,78227371,78228143,78240861,78267519,78294439	78003055,78015548,78020789,78034445,78039274,78089499,78101025,78110354,78113923,78116234,78128160,78129307,78141319,78156367,78162951,78165672,78175697,78175838,78177436,78181662,78216237,78225608,78227532,78228239,78240936,78267595,78294692	0.785714
testis_male_adult_37_years	chr2	241235121	241235135	241235121	-	RAMPAGE_only	2	2	8	0.357567	2.521641	chr2	241234991	241235084	DNA|hAT-Charlie|MER5B	-	chr2	241230774	241236664	HDLBP|ENST00000470482.5	-	241230774,241233819,241235120,241235489,241236614	241230944,241233963,241235275,241235594,241236664	0.500000
testis_male_adult_37_years	chr1	179312625	179312652	179312625	+	RAMPAGE_only	44	53	133	5.944554	5.779730	chr1	179312548	179312870	LTR|ERVL|LTR33	+	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.902256
testis_male_adult_37_years	chr18	24099293	24099310	24099304	-	High_confidence	4	4	12	0.536351	3.584963	chr18	24099157	24099497	LTR|ERVL-MaLR|MLT1A0	-	chr18	24076793	24099320	AC090772.2|ENST00000578443.1	-	24076793,24099222	24077259,24099320	0.666667
testis_male_adult_37_years	chr1	19294029	19294084	19294033	-	RAMPAGE_only	3	3	18	0.804526	3.499228	chr1	19293840	19294040	SINE|Alu|AluJb	-	chr1	19293246	19295736	LOC100506730|NR_037847.1	-	19293246	19295736	0.888889
testis_male_adult_37_years	chr8	6044786	6044789	6044786	-	High_confidence	2	2	6	0.268175	2.584963	chr8	6044194	6045582	LTR|ERV1|LTR12C	-	chr8	6036833	6044627	STRG.142193.1	-	6036833,6044167	6036974,6044627	0.833333
testis_male_adult_37_years	chr11	25453545	25453546	25453545	+	High_confidence	5	5	7	0.312871	2.584963	chr11	25453401	25453775	LTR|ERVL-MaLR|THE1D	+	chr11	25453563	25454102	STRG.185408.1	+	25453563	25454102	0.714286
testis_male_adult_37_years	chr7	130830424	130830461	130830437	+	RAMPAGE_only	14	15	39	1.743140	4.195676	chr7	130830296	130830500	LTR|ERVL-MaLR|MLT1A	-	chr7	130828810	130834320	STRG.138338.1	+	130828810,130832581	130830669,130834320	0.923077
testis_male_adult_37_years	chr20	36696739	36696780	36696779	-	RAMPAGE_only	13	13	30	1.340877	4.189898	chr20	36696486	36696790	SINE|Alu|AluSc	-	chr20	36652374	36700675	STRG.276292.4	-	36652374,36653093,36656359,36656496,36660336,36665045,36665235,36666288,36671340,36680815,36682517,36684412,36687491,36688678,36700434	36653030,36653701,36656411,36656532,36660384,36665097,36665301,36666392,36671397,36680902,36682578,36684475,36687612,36688784,36700675	0.966667
testis_male_adult_37_years	chr19	8379598	8379599	8379598	+	High_confidence	52	52	54	2.413578	4.979098	chr19	8379160	8379914	LTR|ERV1|LTR12D	+	chr19	8379545	8387207	STRG.266282.1	+	8379545,8386163	8379977,8387207	0.925926
testis_male_adult_37_years	chr1	78922290	78922313	78922312	-	RAMPAGE_only	4	4	15	0.670438	3.664498	chr1	78922058	78922480	LINE|L2|L2a	-	chr1	78891153	79006654	ADGRL4|ENST00000640664.1	-	78891153,78891523,78893097,78917633,78917829,78920182,78921612,78926885,78936294,78937806,78938099,78939187,78939648,78946273,79005069,79006632	78891216,78891692,78893189,78917700,78918050,78920386,78921786,78927091,78936411,78937990,78938279,78939258,78939798,78946426,79005219,79006654	0.933333
testis_male_adult_37_years	chr2	131557215	131557221	131557215	+	RAMPAGE_only	3	3	7	0.312871	2.584963	chr2	131556954	131557921	LINE|L1|L1MA6	-	chr2	131543521	131591430	STRG.36693.3	+	131543521,131545045,131555071,131564860,131577507,131580151,131582017,131588664	131543823,131553166,131557463,131575207,131577618,131580264,131582129,131591430	0.714286
testis_male_adult_37_years	chr1	29047360	29047364	29047360	+	RAMPAGE_only	4	7	12	0.536351	2.855389	chr1	29047240	29047553	SINE|Alu|AluJo	-	chr1	29053163	29097904	EPB41|ENST00000646871.1	+	29053163,29058588,29064981,29096154,29097806	29053312,29058645,29065158,29096604,29097904	0.583333
testis_male_adult_37_years	chr12	122218272	122218299	122218272	-	High_confidence	10	11	26	1.162093	3.973661	chr12	122218031	122218232	DNA|hAT-Charlie|MER58A	-	chr12	122208315	122218289	DIABLO|ENST00000439489.6	-	122208315,122209696,122216487,122216758,122218265	122208577,122209858,122216584,122216869,122218289	0.769231
testis_male_adult_37_years	chr3	37058844	37058907	37058886	-	RAMPAGE_only	9	10	39	1.743140	4.366091	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.948718
testis_male_adult_37_years	chr9	66332862	66332893	66332892	+	RAMPAGE_only	7	7	18	0.804526	3.836592	chr9	66332633	66333090	LTR|ERV1|LTR12F	+	chr9	66325244	66337794	STRG.161610.4	+	66325244	66337794	1.000000
testis_male_adult_37_years	chr20	5187059	5187060	5187059	-	High_confidence	30	39	40	1.787836	4.823864	chr20	5187035	5187598	DNA|hAT-Charlie|Charlie1a	+	chr20	5185539	5187233	STRG.273016.1	-	5185539	5187233	0.800000
testis_male_adult_37_years	chr1	79324882	79324897	79324894	-	High_confidence	10	11	33	1.474964	4.718488	chr1	79324743	79325260	LTR|ERV1|LTR8A	-	chr1	79323768	79324852	AL353651.2|ENST00000635706.1	-	79323768,79324585	79324060,79324852	1.000000
testis_male_adult_37_years	chr2	163121648	163121683	163121648	+	High_confidence	60	66	178	7.955869	5.854226	chr2	163121522	163122034	LINE|L1|L1ME2	-	chr2	163121600	163124980	STRG.39291.1	+	163121600,163124118	163121927,163124980	0.994382
testis_male_adult_37_years	chr17	70128829	70128851	70128829	-	High_confidence	6	7	10	0.446959	2.921928	chr17	70128761	70129144	LTR|ERV1|MER48	-	chr17	70112841	70129013	STRG.256919.2	-	70112841,70123838,70125160,70128068,70128642	70113796,70124825,70125262,70128157,70129013	0.800000
testis_male_adult_37_years	chr10	69494978	69495006	69494978	+	High_confidence	4	4	22	0.983310	4.321928	chr10	69494989	69495143	SINE|MIR|MIR3	+	chr10	69494970	69507077	TSPAN15|ENST00000486093.5	+	69494970,69495593,69498279,69504437,69506123,69506828	69495036,69495689,69498396,69504485,69506240,69507077	0.818182
testis_male_adult_37_years	chr12	123997700	123997731	123997712	+	High_confidence	14	14	42	1.877227	4.997677	chr12	123997318	123997758	LTR|ERVL-MaLR|MLT1C	-	chr12	123997777	123998753	ZNF664|ENST00000540498.1	+	123997777,123998396	123997845,123998753	0.500000
testis_male_adult_37_years	chr14	90535886	90535934	90535886	-	RAMPAGE_only	5	5	21	0.938614	4.221928	chr14	90535707	90536062	LTR|ERVL-MaLR|MLT1B	-	chr14	90524563	90816417	TTC7B|ENST00000328459.10	-	90524563,90578105,90593485,90610741,90617928,90644047,90646950,90652840,90654992,90657173,90658303,90676522,90680471,90689539,90695499,90730074,90744791,90780737,90786173,90816174	90541589,90578308,90593626,90610839,90618045,90644208,90647023,90652898,90655110,90657278,90658387,90676660,90680535,90689712,90695578,90730196,90744922,90780906,90786328,90816417	0.952381
testis_male_adult_37_years	chrX	24348002	24348017	24348002	-	High_confidence	88	89	162	7.240734	5.501871	chrX	24347775	24348042	LTR|ERVL|LTR80B	-	chrX	24308095	24348040	STRG.289112.1	-	24308095,24311886,24313517,24313682,24313848,24314013,24346897,24347973	24308637,24313335,24313559,24313725,24313890,24314247,24347019,24348040	0.882716
testis_male_adult_37_years	chr3	192123134	192123152	192123145	-	High_confidence	10	10	41	1.832532	3.852676	chr3	192123060	192123611	LTR|ERVL|LTR33C	-	chr3	192119488	192123130	STRG.68227.1	-	192119488,192123050	192120096,192123130	0.853659
testis_male_adult_37_years	chr12	108920197	108920203	108920197	-	RAMPAGE_only	2	2	6	0.268175	2.584963	chr12	108919806	108920342	LTR|ERVL-MaLR|MLT1F2	+	chr12	108907740	109021240	SVOP|ENST00000610966.4	-	108907740,108915782,108918042,108919674,108922689,108934194,108937263,108938826,108940783,108945102,108960922,108972404,108977397,108978577,108983600,109020833	108912741,108915872,108918124,108919786,108922797,108934271,108937337,108938955,108940909,108945166,108961047,108972476,108977496,108978663,108983761,109021240	0.500000
testis_male_adult_37_years	chr21	36347845	36347869	36347861	+	High_confidence	4	4	15	0.670438	3.664498	chr21	36347587	36347919	LINE|L2|L2b	-	chr21	36347871	36360049	MORC3|ENST00000485299.1	+	36347871,36349310,36356619,36359954	36348260,36349408,36356724,36360049	0.733333
testis_male_adult_37_years	chr3	195356169	195356212	195356211	-	High_confidence	5	6	16	0.715134	2.815922	chr3	195355936	195357733	LINE|L1|L1M1	+	chr3	195333081	195356212	ACAP2|ENST00000423531.3	-	195333081,195336931,195342470,195345258,195356067	195333123,195336976,195342654,195345317,195356212	0.750000
testis_male_adult_37_years	chr18	50142200	50142201	50142200	-	RAMPAGE_only	5	5	8	0.357567	2.750000	chr18	50142094	50142455	LTR|ERVL-MaLR|MLT1I	-	chr18	50040251	50097620	MYO5B|ENST00000586036.1	-	50040251,50055267,50097243	50040314,50055378,50097620	0.500000
testis_male_adult_37_years	chr16	52609160	52609183	52609160	-	RAMPAGE_only	2	2	10	0.446959	3.321928	chr16	52609009	52609147	SINE|MIR|MIRc	-	chr16	52552092	52606994	STRG.245446.2	-	52552092,52590935,52606503	52552434,52591067,52606994	0.700000
testis_male_adult_37_years	chrX	136922340	136922341	136922340	+	RAMPAGE_only	619	619	647	28.918242	5.793304	chrX	136921248	136922756	LTR|ERV1|LTR12C	+	chrX	136920963	136926272	STRG.296793.3	+	136920963,136925246	136922776,136926272	0.782071
testis_male_adult_37_years	chr2	131557288	131557334	131557333	+	RAMPAGE_only	101	103	258	11.531540	6.621512	chr2	131556954	131557921	LINE|L1|L1MA6	-	chr2	131543521	131591430	STRG.36693.3	+	131543521,131545045,131555071,131564860,131577507,131580151,131582017,131588664	131543823,131553166,131557463,131575207,131577618,131580264,131582129,131591430	0.887597
testis_male_adult_37_years	chr13	44456257	44456271	44456257	-	RAMPAGE_only	26	27	114	5.095332	5.644365	chr13	44456064	44456586	LTR|ERV1|LTR12	-	chr13	44432142	44474301	TSC22D1|NM_001243798.1	-	44432142,44436043,44474217	44434883,44436095,44474301	0.798246
testis_male_adult_37_years	chr2	215615216	215615285	215615216	+	RAMPAGE_only	3	3	29	1.296181	4.086790	chr2	215614980	215615441	LTR|ERV1|LTR12E	-	chr2	215546197	215713895	AC012668.3|ENST00000417485.6	+	215546197,215621857,215665379,215666982,215677943,215681497,215681923,215713239	215546413,215621925,215665445,215667060,215678206,215681589,215682126,215713895	0.724138
testis_male_adult_37_years	chr2	131574783	131574855	131574798	+	RAMPAGE_only	12	12	29	1.296181	3.220604	chr2	131572716	131575037	LINE|L1|L1PB1	-	chr2	131543521	131591430	STRG.36693.3	+	131543521,131545045,131555071,131564860,131577507,131580151,131582017,131588664	131543823,131553166,131557463,131575207,131577618,131580264,131582129,131591430	1.000000
testis_male_adult_37_years	chr4	5432305	5432318	5432305	+	High_confidence	4	4	12	0.536351	3.277613	chr4	5432286	5432555	LINE|L2|L2b	-	chr4	5432285	5447330	STK32B|ENST00000511959.1	+	5432285,5435703,5446672	5432370,5435933,5447330	0.500000
testis_male_adult_37_years	chr20	37298760	37298761	37298760	+	RAMPAGE_only	16	16	22	0.983310	3.721928	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.909091
testis_male_adult_37_years	chr20	31418522	31418523	31418522	-	RAMPAGE_only	4	5	7	0.312871	2.584963	chr20	31418431	31418778	LTR|ERV1|MER66A	+	chr20	31404844	31412838	DEFB121|ENST00000376312.3	-	31404844,31412621	31405085,31412838	0.571429
testis_male_adult_37_years	chr17	5118250	5118269	5118250	+	RAMPAGE_only	2	3	7	0.312871	2.807355	chr17	5118191	5119096	LTR|ERV1|LTR28B	-	chr17	5116437	5175032	USP6|NM_001304284.1	+	5116437,5118199,5120626,5121374,5124565,5125820,5127503,5128951,5129935,5130366,5130601,5132395,5132909,5133442,5133886,5135233,5135807,5136639,5137120,5137650,5138120,5139254,5141424,5142002,5142396,5144689,5145404,5146022,5147082,5148555,5155421,5161527,5162883,5167931,5168766,5170478,5171586,5172804	5116740,5118290,5120788,5121750,5125272,5125938,5127639,5129133,5130089,5130439,5130684,5132435,5132990,5133550,5133996,5135282,5135928,5136734,5137186,5137750,5138273,5139674,5141499,5142141,5142502,5144863,5145579,5146174,5147194,5148767,5155606,5161614,5163004,5168123,5169055,5170915,5171679,5175032	1.000000
testis_male_adult_37_years	chr7	29297442	29297452	29297451	+	RAMPAGE_only	8	8	17	0.759830	3.750000	chr7	29297321	29298989	LTR|ERV1|MER61-int	-	chr7	29197740	29514335	CHN2|NM_001293072.1	+	29197740,29354624,29367931,29393678,29398372,29400542,29480278,29495951,29499866,29504743,29507227,29509300,29512563	29197983,29354663,29367987,29393710,29398486,29400828,29480356,29496036,29500040,29504821,29507365,29509406,29514335	0.588235
testis_male_adult_37_years	chr13	86792305	86792364	86792305	+	High_confidence	11	12	64	2.860537	5.199192	chr13	86792081	86793348	LTR|ERV1|LTR12C	+	chr13	86792200	86795975	STRG.218811.1	+	86792200,86794878	86792584,86795975	0.890625
testis_male_adult_37_years	chr6	108312817	108312846	108312845	+	RAMPAGE_only	3	3	15	0.670438	3.664498	chr6	108312766	108312935	SINE|Alu|FRAM	-	chr6	108295752	108356751	AFG1L|ENST00000437715.1	+	108295752,108319616,108323824,108346987,108355653,108356689	108295879,108319791,108324048,108347039,108355755,108356751	0.533333
testis_male_adult_37_years	chr17	47325000	47325010	47325003	-	RAMPAGE_only	4	4	14	0.625742	3.664498	chr17	47324758	47325030	LINE|L2|L2a	+	chr17	47303442	47323901	THCAT158|NR_110880.1	-	47303442,47318471,47323688	47303782,47318620,47323901	0.642857
testis_male_adult_37_years	chr5	176943347	176943387	176943347	-	RAMPAGE_only	3	3	14	0.625742	3.521641	chr5	176943235	176943320	DNA|hAT-Charlie|Charlie10	-	chr5	176905065	176970793	UIMC1|ENST00000510698.2	-	176905065,176906010,176907113,176908522,176911310,176943334,176951473,176955958,176958092,176969600,176970741	176905492,176906047,176907177,176908694,176911389,176943488,176951577,176956035,176958154,176969706,176970793	1.000000
testis_male_adult_37_years	chr3	79502255	79502270	79502269	-	High_confidence	10	10	31	1.385573	4.444188	chr3	79502073	79503465	LTR|ERV1|LTR12C	+	chr3	79498445	79503118	STRG.56690.1	-	79498445	79503118	0.709677
testis_male_adult_37_years	chr1	87635634	87635635	87635634	-	High_confidence	42	43	45	2.011315	4.440552	chr1	87635319	87636791	LTR|ERV1|LTR12C	-	chr1	87634899	87635628	STRG.9129.1	-	87634899	87635628	0.911111
testis_male_adult_37_years	chrX	45615747	45615748	45615747	+	High_confidence	7	7	9	0.402263	2.641604	chrX	45615415	45616062	LTR|ERV1|LTR12	+	chrX	45615813	45617244	STRG.291008.1	+	45615813	45617244	0.888889
testis_male_adult_37_years	chr11	5144693	5144714	5144693	-	RAMPAGE_only	3	3	12	0.536351	3.418296	chr11	5144230	5145619	LTR|ERV1|LTR12C	+	chr11	5143218	5154757	OR52A1|ENST00000380367.2	-	5143218,5154446	5152690,5154757	0.666667
testis_male_adult_37_years	chr12	127983312	127983334	127983333	-	High_confidence	4	4	9	0.402263	3.000000	chr12	127983198	127984510	LTR|ERV1|LTR12C	+	chr12	127883988	127983891	LINC00508|NR_126452.2	-	127883988,127940573,127983066,127983801	127885105,127940735,127983125,127983891	0.666667
testis_male_adult_37_years	chr2	72515771	72515781	72515771	-	High_confidence	22	23	57	2.547666	5.280087	chr2	72515744	72516190	LTR|ERVL-MaLR|MLT1C	+	chr2	72499927	72515754	EXOC6B|ENST00000485398.1	-	72499927,72513131,72514633,72515042,72515435	72499972,72513252,72514680,72515126,72515754	1.000000
testis_male_adult_37_years	chr11	131067569	131067586	131067569	+	High_confidence	66	69	120	5.363507	5.894871	chr11	131067554	131069044	LTR|ERVL|ERV3-16A3_I-int	+	chr11	131067577	131068935	STRG.196182.1	+	131067577	131068935	0.700000
testis_male_adult_37_years	chr1	19891493	19891502	19891493	+	RAMPAGE_only	2	2	6	0.268175	2.584963	chr1	19891384	19891727	LINE|L2|L2	-	chr1	19882512	19912945	OTUD3|ENST00000375120.3	+	19882512,19890384,19894367,19897539,19904266,19904890,19906431,19907569	19882734,19890533,19894480,19897662,19904398,19904987,19906616,19912945	0.500000
testis_male_adult_37_years	chr4	170280013	170280061	170280060	-	High_confidence	4	4	24	1.072701	4.436605	chr4	170279986	170280159	DNA|hAT-Tip100|MER45A	-	chr4	170279473	170279983	STRG.86062.1	-	170279473	170279983	0.708333
testis_male_adult_37_years	chr6	85865839	85865859	85865858	+	High_confidence	12	12	34	1.519660	4.020855	chr6	85864765	85867347	LTR|ERV1|HERV3-int	-	chr6	85865572	85868051	STRG.116181.1	+	85865572	85868051	0.941176
testis_male_adult_37_years	chr7	56428399	56428415	56428414	-	RAMPAGE_only	5	5	12	0.536351	2.913977	chr7	56428205	56428743	DNA|hAT-Charlie|MER1A	-	chr7	56421856	56432702	AC092447.7|ENST00000422212.1	-	56421856,56423689,56426134,56426834,56432487	56422009,56424637,56426263,56427010,56432702	0.916667
testis_male_adult_37_years	chr12	11548077	11548078	11548077	+	High_confidence	14	14	15	0.670438	3.182006	chr12	11547109	11548392	LTR|ERV1|LTR12C	+	chr12	11548029	11564403	LINC01252|ENST00000499291.6	+	11548029,11549589,11552579,11553565,11553848,11555254,11559290,11563700	11548360,11549721,11552693,11553682,11554070,11557216,11559382,11564403	0.733333
testis_male_adult_37_years	chr1	205422013	205422056	205422055	-	High_confidence	245	245	419	18.727579	6.841216	chr1	205421923	205422209	DNA|DNA|UCON78	-	chr1	205381377	205422054	LEMD1|ENST00000367153.8	-	205381377,205384287,205416231,205419229,205420454,205421989	205381856,205384364,205416296,205419352,205420574,205422054	0.928401
testis_male_adult_37_years	chr16	57782292	57782357	57782325	-	High_confidence	5	5	19	0.849222	3.642150	chr16	57782226	57782370	SINE|MIR|MIRc	-	chr16	57771635	57782329	KIFC3|ENST00000569619.5	-	57771635,57772222,57779360,57781838	57771686,57772288,57779450,57782329	0.842105
testis_male_adult_37_years	chrX	133662070	133662102	133662085	-	RAMPAGE_only	2	2	10	0.446959	3.169925	chrX	133662014	133662231	LINE|L2|L2b	-	chrX	133596365	133753702	GPC3|ENST00000406757.2	-	133596365,133661729,133692368,133699894,133753481	133596599,133661850,133692494,133700028,133753702	0.500000
testis_male_adult_37_years	chr19	12861505	12861535	12861505	+	RAMPAGE_only	2	2	10	0.446959	2.521928	chr19	12861363	12861650	LINE|L2|L2a	-	chr19	12865015	12874349	STRG.266737.2	+	12865015,12865716,12865979,12866652,12867473,12867729,12868642,12869065,12870823,12871035,12873323,12873608	12865481,12865818,12866102,12866762,12867652,12867977,12868849,12869295,12870946,12871172,12873511,12874349	0.500000
testis_male_adult_37_years	chr6	112097828	112097834	112097833	+	High_confidence	13	15	22	0.983310	4.061482	chr6	112097799	112097867	LINE|L2|L2a	-	chr6	112097838	112100895	STRG.119283.5	+	112097838,112099269,112100669	112098215,112099408,112100895	0.909091
testis_male_adult_37_years	chr4	169697625	169697647	169697625	+	RAMPAGE_only	6	6	12	0.536351	3.418296	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169695630	169706888	CLCN3|ENST00000515420.1	+	169695630,169697188,169697360,169703997,169706867	169695692,169697279,169697734,169704184,169706888	0.500000
testis_male_adult_37_years	chr4	16399883	16399884	16399883	+	RAMPAGE_only	9	9	12	0.536351	3.277613	chr4	16399797	16400257	LTR|ERVL|MER21B	+	chr4	16360890	16443095	STRG.71402.5	+	16360890,16400429,16426364,16434056	16360996,16400533,16426440,16443095	0.500000
testis_male_adult_37_years	chr17	76302506	76302543	76302542	-	RAMPAGE_only	5	5	18	0.804526	4.087463	chr17	76302392	76302821	LTR|ERVL-MaLR|MLT1D	+	chr17	76274048	76307680	QRICH2|NM_032134.2	-	76274048,76275818,76276679,76277162,76277988,76279040,76279362,76280032,76280286,76280653,76280830,76281863,76287191,76287799,76289991,76291014,76304414,76304881,76307464	76274243,76275947,76276767,76277310,76278189,76279142,76279428,76280154,76280451,76280728,76280953,76282115,76287306,76287897,76290077,76294021,76304525,76304941,76307680	0.944444
testis_male_adult_37_years	chr18	68823386	68823387	68823386	+	High_confidence	106	110	144	6.436208	5.706036	chr18	68822847	68823421	LTR|ERV1|MER51E	+	chr18	68823373	68897793	CCDC102B|ENST00000577772.5	+	68823373,68836748,68838705,68846312,68874668,68897218,68897577	68823416,68837369,68838926,68846421,68874785,68897428,68897793	0.979167
testis_male_adult_37_years	chr1	86523498	86523499	86523498	-	High_confidence	62	62	69	3.084017	4.764388	chr1	86523128	86524369	LTR|ERV1|LTR12C	-	chr1	86522169	86523487	STRG.9011.1	-	86522169	86523487	0.956522
testis_male_adult_37_years	chr8	74599783	74599808	74599807	+	RAMPAGE_only	5	5	10	0.446959	2.947703	chr8	74594235	74600252	LINE|L1|L1PA3	-	chr8	74612929	74613301	STRG.148721.1	+	74612929	74613301	0.600000
testis_male_adult_37_years	chr10	68911111	68911162	68911140	+	RAMPAGE_only	3	3	13	0.581047	3.084963	chr10	68911147	68911199	LINE|CR1|X6B_LINE	+	chr10	68913426	68934883	DDX50|ENST00000460470.1	+	68913426,68914058,68919831,68934798	68913576,68914204,68919981,68934883	0.692308
testis_male_adult_37_years	chr1	167937075	167937153	167937081	+	High_confidence	34	34	180	8.045260	5.064247	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167937152	167993330	DCAF6|ENST00000455334.5	+	167937152,167951799,167966628,167974829,167987494,167991203,167993225	167937252,167951861,167966721,167975015,167987608,167991339,167993330	0.977778
testis_male_adult_37_years	chr16	83214029	83214048	83214047	+	High_confidence	3	7	10	0.446959	2.947703	chr16	83213743	83214155	LTR|ERV1|LTR12	+	chr16	83214066	83602579	STRG.248667.1	+	83214066,83217344,83344861,83486476,83602453	83214199,83217497,83345006,83486655,83602579	0.800000
testis_male_adult_37_years	chr18	28045568	28045604	28045603	-	High_confidence	11	11	24	1.072701	4.142915	chr18	28045506	28045847	LINE|L2|L2c	+	chr18	28005969	28045596	CDH2|ENST00000418492.5	-	28005969,28009716,28011845,28013682,28045410	28005993,28009872,28011992,28013909,28045596	0.583333
testis_male_adult_37_years	chr15	90511352	90511353	90511352	+	High_confidence	279	279	322	14.392077	5.111466	chr15	90510776	90511739	LTR|ERV1|LTR12D	+	chr15	90511264	90518649	STRG.239641.1	+	90511264,90512399,90518542	90511703,90512604,90518649	0.965839
testis_male_adult_37_years	chr15	83609389	83609411	83609389	+	High_confidence	5	5	15	0.670438	3.324863	chr15	83609249	83609484	DNA|TcMar-Tigger|Tigger15a	+	chr15	83609402	83618305	SH3GL3|ENST00000467735.2	+	83609402,83611417,83618081	83609466,83611587,83618305	0.866667
testis_male_adult_37_years	chr1	12096208	12096248	12096208	+	High_confidence	9	9	22	0.983310	3.884184	chr1	12095749	12096245	LTR|ERVL-MaLR|MLT1K	-	chr1	12096226	12144205	STRG.1200.3	+	12096226,12097100,12104378,12109565,12110040,12111897,12115576,12123283,12123714,12125950,12126182,12135587,12138228,12142286	12096734,12097217,12104531,12109656,12110204,12112014,12115729,12123377,12123827,12126052,12126236,12135613,12138436,12144205	0.863636
testis_male_adult_37_years	chr10	122933443	122933464	122933458	-	High_confidence	28	28	69	3.084017	4.825886	chr10	122933198	122933474	SINE|Alu|AluSx1	+	chr10	122932408	122933459	C10orf88|ENST00000462191.1	-	122932408,122933373	122932661,122933459	0.565217
testis_male_adult_37_years	chr13	38567638	38567655	38567644	-	High_confidence	11	11	44	1.966619	4.861970	chr13	38567624	38569406	LINE|L1|L1PA16	+	chr13	38566952	38567642	STRG.213469.1	-	38566952,38567531	38567451,38567642	0.659091
testis_male_adult_37_years	chr19	56365916	56365945	56365927	-	High_confidence	4	4	15	0.670438	3.640224	chr19	56365534	56366197	LINE|L1|L1MCa	+	chr19	56354492	56365949	AC006116.9|ENST00000591630.1	-	56354492,56363234,56364955,56365715	56354641,56363398,56365057,56365949	0.933333
testis_male_adult_37_years	chr21	39379587	39379619	39379587	+	High_confidence	12	12	58	2.592362	5.267211	chr21	39379417	39379706	SINE|Alu|AluSc	-	chr21	39379570	39397743	WRB|ENST00000650376.1	+	39379570,39390697,39391768,39393165,39396865	39379770,39390863,39391836,39393280,39397743	0.931034
testis_male_adult_37_years	chr13	54799642	54799643	54799642	+	High_confidence	7	8	11	0.491655	3.459432	chr13	54799141	54800235	LTR|ERV1|LTR12E	-	chr13	54798936	54801623	STRG.215200.1	+	54798936,54800654	54800259,54801623	0.818182
testis_male_adult_37_years	chr1	111608312	111608349	111608312	-	High_confidence	3	3	18	0.804526	3.852169	chr1	111607038	111608899	Retroposon|SVA|SVA_D	-	chr1	111599006	111608318	LINC01160|NR_034126.1	-	111599006,111602191,111604368,111604628,111608135	111600095,111602255,111604500,111604702,111608318	0.944444
testis_male_adult_37_years	chr6	125046442	125046455	125046442	+	High_confidence	3	3	7	0.312871	2.521641	chr6	125046404	125046490	DNA|hAT-Charlie|MER5B	+	chr6	125046599	125082954	RNF217|ENST00000368415.2	+	125046599,125057941,125076656,125081435,125082863	125046661,125058106,125076858,125081507,125082954	0.714286
testis_male_adult_37_years	chr9	15430147	15430181	15430180	+	RAMPAGE_only	3	3	14	0.625742	3.324863	chr9	15430148	15430451	SINE|Alu|AluJo	+	chr9	15422878	15453104	SNAPC3|ENST00000421710.5	+	15422878,15423908,15433551,15444601,15451319,15453040	15423193,15423986,15433636,15444706,15451402,15453104	0.500000
testis_male_adult_37_years	chr5	150640005	150640051	150640005	+	High_confidence	5	6	28	1.251485	4.494680	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	1.000000
testis_male_adult_37_years	chr17	52862101	52862102	52862101	+	High_confidence	335	384	457	20.426022	6.637597	chr17	52861817	52862431	LTR|ERV1|LTR12_	+	chr17	52862120	52899588	LINC02089|ENST00000412360.1	+	52862120,52898433,52899330	52862471,52898506,52899588	0.757112
testis_male_adult_37_years	chr7	100509402	100509423	100509422	+	High_confidence	16	16	36	1.609052	4.593400	chr7	100509277	100509733	LTR|ERVL-MaLR|MLT1F	-	chr7	100509575	100520403	STRG.135387.1	+	100509575,100510981,100516592,100519883	100509801,100511136,100516756,100520403	0.694444
testis_male_adult_37_years	chr3	171710415	171710455	171710451	-	High_confidence	11	14	33	1.474964	4.687500	chr3	171710343	171710666	DNA|hAT-Charlie|MER1B	-	chr3	171688694	171710914	STRG.65725.8	-	171688694,171692331,171695862,171708754,171709559,171709940	171688876,171692442,171699826,171708838,171709709,171710914	0.939394
testis_male_adult_37_years	chr10	46269501	46269577	46269541	-	High_confidence	3	3	21	0.938614	4.121928	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.761905
testis_male_adult_37_years	chr10	89888961	89888962	89888961	+	High_confidence	7	7	10	0.446959	2.947703	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89888943	89914940	STRG.177869.2	+	89888943,89914635	89889149,89914940	0.800000
testis_male_adult_37_years	chr20	10318730	10318756	10318730	-	High_confidence	17	19	70	3.128712	5.399006	chr20	10318636	10318893	LTR|ERVL-MaLR|MLT1M	-	chr20	10317782	10318737	STRG.273402.1	-	10317782	10318737	0.871429
testis_male_adult_37_years	chr9	93095390	93095422	93095390	-	High_confidence	3	3	14	0.625742	3.093069	chr9	93095350	93095421	SINE|MIR|MIRc	+	chr9	93091442	93095529	STRG.164425.1	-	93091442,93091991,93095224	93091699,93092093,93095529	0.928571
testis_male_adult_37_years	chr13	99496638	99496639	99496638	-	RAMPAGE_only	39	40	40	1.787836	4.178703	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99486961	99499306	LINC01232|NR_110731.1	-	99486961,99496134,99496374,99497248,99498685	99487816,99496217,99496544,99497336,99499306	0.675000
testis_male_adult_37_years	chr12	93815433	93815439	93815433	+	High_confidence	44	44	92	4.112022	5.269196	chr12	93814948	93815649	DNA|hAT-Charlie|MER20B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.500000
testis_male_adult_37_years	chr1	155478111	155478112	155478111	-	RAMPAGE_only	7	8	10	0.446959	2.725481	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.800000
testis_male_adult_37_years	chr13	105681674	105681689	105681674	-	RAMPAGE_only	2	2	11	0.491655	2.846439	chr13	105681609	105681919	SINE|Alu|AluY	-	chr13	105641873	105691596	STRG.220841.2	-	105641873,105676974,105680730,105691550	105642092,105677089,105680878,105691596	0.818182
testis_male_adult_37_years	chr11	66715072	66715073	66715072	-	RAMPAGE_only	7	7	10	0.446959	2.947703	chr11	66714958	66715210	DNA|hAT-Charlie|Charlie10	-	chr11	66685251	66721240	SPTBN2|ENST00000529997.5	-	66685251,66686993,66687426,66687867,66688003,66688168,66688652,66689095,66689804,66690038,66691283,66692535,66692969,66693185,66693771,66694138,66696276,66698638,66698991,66699405,66700525,66701583,66704597,66705683,66707515,66708140,66708901,66710581,66710916,66713630,66714090,66714315,66715221,66715829,66721083	66686440,66687167,66687647,66687918,66688079,66688311,66688849,66689180,66689943,66690283,66691658,66692740,66693100,66693446,66693861,66694363,66696540,66698785,66699082,66699608,66701282,66701721,66705468,66705837,66707818,66708299,66709019,66710769,66711029,66713746,66714171,66714407,66715395,66715981,66721240	0.700000
testis_male_adult_37_years	chr2	30622093	30622094	30622093	-	High_confidence	5	5	7	0.312871	2.521641	chr2	30621427	30623046	LINE|L1|L1PBa	+	chr2	30621619	30621912	STRG.26060.1	-	30621619	30621912	0.857143
testis_male_adult_37_years	chr12	49111502	49111527	49111502	-	High_confidence	3	5	13	0.581047	3.418296	chr12	49111473	49111558	SINE|Alu|AluSz6	-	chr12	49097138	49110900	LMBR1L|NM_001300750.1	-	49097138,49097943,49100387,49100555,49101249,49101471,49102119,49102292,49102467,49102886,49103090,49103686,49104447,49104745,49105923,49106544,49106960,49110483	49097739,49098105,49100454,49100646,49101323,49101549,49102196,49102376,49102540,49102951,49103159,49103813,49104551,49104885,49105957,49106746,49107045,49110900	0.769231
testis_male_adult_37_years	chr19	663401	663436	663435	+	High_confidence	2	2	6	0.268175	2.584963	chr19	663474	663667	LINE|L2|L2a	+	chr19	663481	669500	AC004156.1|ENST00000591866.2	+	663481,667211	664511,669500	1.000000
testis_male_adult_37_years	chr12	55479507	55479535	55479507	-	High_confidence	8	9	32	1.430269	3.986454	chr12	55478463	55480124	Retroposon|SVA|SVA_D	-	chr12	55434733	55479472	AC122685.1|ENST00000555146.5	-	55434733,55476548,55479388	55435131,55476601,55479472	0.906250
testis_male_adult_37_years	chr7	69482882	69482901	69482890	+	High_confidence	3	3	12	0.536351	3.459432	chr7	69482426	69483187	LTR|ERV1|LTR17	+	chr7	69482833	69484580	STRG.131846.1	+	69482833,69484037	69483366,69484580	0.666667
testis_male_adult_37_years	chr7	127215126	127215147	127215126	+	High_confidence	13	13	25	1.117397	4.083856	chr7	127214824	127215773	LINE|L1|L1MEd	-	chr7	127215126	127229921	AC000099.1|ENST00000413812.1	+	127215126,127219466,127228372	127215253,127219702,127229921	0.920000
testis_male_adult_37_years	chr2	227889507	227889528	227889510	+	High_confidence	3	3	13	0.581047	3.700440	chr2	227889209	227889569	LTR|ERVL-MaLR|MLT1A1	-	chr2	227889512	227895591	DAW1|ENST00000472604.1	+	227889512,227889855,227891254,227893794,227895498	227889573,227890000,227891313,227893917,227895591	0.538462
testis_male_adult_37_years	chr16	22091918	22091959	22091956	+	High_confidence	17	19	35	1.564356	4.801970	chr16	22091884	22092045	DNA|hAT-Charlie|MER5A	+	chr16	22092537	22156966	VWA3A|NM_173615.4	+	22092537,22096858,22097571,22100193,22100415,22103474,22109481,22110887,22115346,22116758,22117110,22118901,22120967,22121513,22123084,22123612,22126177,22131204,22131584,22132899,22134367,22138359,22140153,22141581,22142667,22144246,22146235,22148161,22149786,22150694,22152510,22155566,22155850,22156031	22092651,22096945,22097695,22100318,22100493,22103529,22109580,22110994,22115472,22116867,22117176,22119027,22121103,22121617,22123165,22123707,22126297,22131279,22131729,22133095,22134438,22138512,22140244,22141692,22142765,22144384,22146344,22148306,22149931,22150846,22152634,22155664,22155916,22156966	0.800000
testis_male_adult_37_years	chr3	8679867	8679904	8679867	-	RAMPAGE_only	6	6	13	0.581047	3.700440	chr3	8679701	8680302	LTR|ERV1|HERVE-int	+	chr3	8619594	8682071	SSUH2|ENST00000317371.8	-	8619594,8623548,8625541,8626228,8627697,8629663,8630804,8632048,8633665,8635299,8635758,8639947,8658924,8663743,8670997,8671893,8677205,8679704,8681890	8620014,8623656,8625647,8626321,8627783,8629726,8630929,8632109,8633941,8635381,8635857,8640069,8659013,8663802,8671153,8672035,8677353,8679849,8682071	0.846154
testis_male_adult_37_years	chr3	148591932	148591954	148591953	-	High_confidence	4	4	19	0.849222	4.058814	chr3	148591733	148592097	LTR|ERVL-MaLR|MLT1A0	-	chr3	148368383	148591927	AC069410.1|ENST00000648979.1	-	148368383,148384759,148446265,148446902,148455352,148591817	148368493,148384869,148446347,148446998,148455531,148591927	0.578947
testis_male_adult_37_years	chr3	85134329	85134346	85134329	+	High_confidence	2	2	6	0.268175	2.584963	chr3	85132837	85134425	LTR|ERV1|LTR12C	-	chr3	85133641	85239226	STRG.57144.1	+	85133641,85238956	85134491,85239226	1.000000
testis_male_adult_37_years	chr12	53727811	53727824	53727811	+	High_confidence	3	3	7	0.312871	2.521641	chr12	53727785	53728020	SINE|MIR|MIRc	-	chr12	53727820	53728434	STRG.203042.1	+	53727820	53728434	0.714286
testis_male_adult_37_years	chr13	94396002	94396017	94396002	+	RAMPAGE_only	4	5	8	0.357567	2.750000	chr13	94395829	94396282	LTR|ERVL|LTR33	+	chr13	94286347	94403217	GPC6|ENST00000617456.1	+	94286347,94305979,94382413,94398465,94403014	94286479,94306123,94382550,94398641,94403217	0.500000
testis_male_adult_37_years	chr3	14593768	14593783	14593782	-	High_confidence	5	5	9	0.402263	2.750000	chr3	14593698	14593849	DNA|hAT-Charlie|MER20B	-	chr3	14593088	14593769	STRG.49442.1	-	14593088	14593769	0.777778
testis_male_adult_37_years	chr12	124840054	124840055	124840054	-	RAMPAGE_only	38	38	39	1.743140	4.161501	chr12	124840014	124840185	LINE|L1|L1MB3	-	chr12	124785819	124817707	SCARB1|ENST00000544327.1	-	124785819,124787405,124795194,124800123,124807760,124810173,124811869,124814201,124814972,124817549	124786503,124787457,124795268,124800242,124807927,124810289,124811965,124814405,124815114,124817707	0.974359
testis_male_adult_37_years	chr4	147838958	147838959	147838958	+	RAMPAGE_only	6	6	9	0.402263	2.500000	chr4	147838748	147839067	DNA|TcMar-Tc2|Kanga2_a	-	chr4	147860982	148072776	ARHGAP10|ENST00000506054.5	+	147860982,147875020,147879231,147881837,147906637,147909731,147913073,147939824,147946616,147955315,147965023,147966679,148023262,148046891,148063147,148064415,148071992	147866816,147875150,147879338,147881932,147906719,147909777,147913139,147939899,147946704,147955374,147965129,147966839,148023413,148047051,148063300,148064507,148072776	0.888889
testis_male_adult_37_years	chr16	17395141	17395145	17395141	-	RAMPAGE_only	3	3	6	0.268175	2.584963	chr16	17394962	17395330	LTR|ERVL-MaLR|THE1D	-	chr16	17101768	17470881	XYLT1|ENST00000261381.6	-	17101768,17117645,17127665,17134472,17138354,17141152,17158828,17198211,17200481,17258987,17358011,17470433	17109017,17117979,17127861,17134735,17138531,17141369,17158909,17198414,17200654,17259498,17358050,17470881	0.666667
testis_male_adult_37_years	chr16	57226797	57226810	57226809	+	RAMPAGE_only	8	8	17	0.759830	3.499228	chr16	57226260	57226901	LTR|ERV1|MER41B	-	chr16	57224421	57239046	RSPRY1|ENST00000563073.1	+	57224421,57227341,57230710,57231166,57235123,57238878	57224479,57227453,57230813,57231319,57235228,57239046	0.647059
testis_male_adult_37_years	chr13	84894246	84894247	84894246	-	High_confidence	237	239	247	11.039885	4.580192	chr13	84893961	84895112	LTR|ERV1|LTR12D	-	chr13	84892197	84894386	STRG.218416.1	-	84892197,84893952	84892328,84894386	0.587045
testis_male_adult_37_years	chr5	997289	997319	997318	-	High_confidence	11	12	31	1.385573	4.518397	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	1.000000
testis_male_adult_37_years	chr3	373533	373582	373566	+	High_confidence	3	3	15	0.670438	3.589898	chr3	367661	374053	LINE|L1|L1PA6	-	chr3	373595	389340	CHL1|ENST00000470880.6	+	373595,377817,382178,382473,383815,389251	373661,377942,382280,382671,383886,389340	0.866667
testis_male_adult_37_years	chr5	53112565	53112598	53112565	+	RAMPAGE_only	3	4	11	0.491655	3.095795	chr5	53112337	53112787	LTR|ERV1|LTR12B	+	chr5	53109898	53115126	AC008966.1|ENST00000499459.2	+	53109898,53112239	53110148,53115126	1.000000
testis_male_adult_37_years	chr1	202238942	202238969	202238953	+	RAMPAGE_only	10	10	36	1.609052	4.571861	chr1	202238875	202239278	LTR|ERV1|MER48	-	chr1	202210707	202305749	LGR6|ENST00000423542.5	+	202210707,202225422,202227935,202235921,202276305,202297507,202303278,202304558,202305683	202210791,202225494,202228007,202235993,202276521,202297576,202303347,202304630,202305749	0.527778
testis_male_adult_37_years	chr13	103421288	103421293	103421292	+	RAMPAGE_only	5	5	10	0.446959	3.121928	chr13	103421174	103421408	SINE|MIR|MIRb	+	chr13	103425199	103427685	LINC01309|ENST00000444795.1	+	103425199,103427315	103425321,103427685	0.900000
testis_male_adult_37_years	chr1	163346548	163346554	163346548	+	RAMPAGE_only	4	4	8	0.357567	2.807355	chr1	163346572	163346850	SINE|Alu|AluJr	+	chr1	163321953	163355764	NUF2|ENST00000271452.7	+	163321953,163326031,163327487,163328227,163328845,163336750,163338019,163339380,163340363,163343732,163345677,163347762,163348944,163355334	163322212,163326174,163327562,163328304,163328907,163336848,163338093,163339477,163340426,163343870,163345818,163347938,163349080,163355764	0.625000
testis_male_adult_37_years	chr12	57935491	57935534	57935491	-	High_confidence	3	3	17	0.759830	3.625000	chr12	57935455	57935567	LINE|L2|L2	+	chr12	57931568	57936059	AC084033.3|ENST00000547492.1	-	57931568,57935469	57931737,57936059	0.882353
testis_male_adult_37_years	chr21	22209919	22209952	22209919	+	High_confidence	6	6	15	0.670438	3.664498	chr21	22209807	22210118	SINE|Alu|AluY	-	chr21	22209930	22213074	STRG.279395.1	+	22209930,22212734	22210244,22213074	0.666667
testis_male_adult_37_years	chr3	136831561	136831589	136831588	+	RAMPAGE_only	2	2	6	0.268175	2.584963	chr3	136831371	136831651	LINE|L2|L2c	-	chr3	136819083	136855888	SLC35G2|ENST00000393079.3	+	136819083,136854442	136819214,136855888	0.500000
testis_male_adult_37_years	chr17	17686057	17686076	17686057	+	RAMPAGE_only	2	3	8	0.357567	2.750000	chr17	17685599	17686175	LINE|L2|L2b	+	chr17	17682494	17793143	RAI1|ENST00000471135.2	+	17682494,17683545,17724027,17792932	17682563,17683703,17724159,17793143	0.875000
testis_male_adult_37_years	chr6	69718667	69718692	69718667	-	RAMPAGE_only	2	2	12	0.536351	3.277613	chr6	69718461	69718829	LTR|ERVL-MaLR|THE1C	-	chr6	69675973	69749408	LMBRD1|ENST00000650473.1	-	69675973,69676449,69697562,69699042,69700764,69701442,69701888,69713644,69718955,69737941,69741788,69743783,69743987,69749340	69676271,69676541,69697641,69699192,69700869,69701545,69701953,69713797,69719081,69738015,69741877,69743881,69744047,69749408	0.833333
testis_male_adult_37_years	chr18	44579705	44579732	44579731	-	High_confidence	3	4	9	0.402263	2.725481	chr18	44579725	44579836	SINE|MIR|MIR	+	chr18	44577979	44579840	STRG.261528.1	-	44577979,44579490	44578263,44579840	1.000000
testis_male_adult_37_years	chr7	26261843	26261891	26261890	+	High_confidence	2	3	9	0.402263	3.169925	chr7	26261273	26263036	Retroposon|SVA|SVA_D	+	chr7	26261382	26264747	STRG.128428.1	+	26261382,26263717	26262086,26264747	0.777778
testis_male_adult_37_years	chr17	20017144	20017145	20017144	+	High_confidence	889	903	1058	47.288253	5.974225	chr17	20016290	20017558	LTR|ERV1|LTR12C	+	chr17	20017144	20099510	STRG.252278.15	+	20017144,20017986,20057676,20096630	20017605,20018102,20057817,20099510	0.968809
testis_male_adult_37_years	chr16	3129658	3129669	3129668	-	RAMPAGE_only	2	3	7	0.312871	2.584963	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3128832	3132042	ZNF213-AS1|ENST00000573447.1	-	3128832,3131746	3129653,3132042	0.571429
testis_male_adult_37_years	chr9	88464501	88464512	88464501	+	RAMPAGE_only	5	5	10	0.446959	3.121928	chr9	88464478	88464627	DNA|hAT-Charlie|Charlie1	+	chr9	88389014	88475203	STRG.164156.5	+	88389014,88426381,88448940,88462495,88468371,88475077	88418951,88426591,88448989,88462749,88468605,88475203	1.000000
testis_male_adult_37_years	chr16	10031629	10031651	10031629	+	RAMPAGE_only	2	2	7	0.312871	2.521641	chr16	10031623	10032189	LINE|L2|L2c	+	chr16	10033683	10037297	AC133565.1|ENST00000569218.1	+	10033683,10036985	10033859,10037297	0.714286
testis_male_adult_37_years	chr9	127313291	127313303	127313291	+	High_confidence	5	5	13	0.581047	3.546594	chr9	127312879	127313350	LTR|ERVL-MaLR|MLT1L	-	chr9	127313352	127336222	GARNL3|ENST00000495172.1	+	127313352,127318062,127320714,127325068,127332273,127333022,127335229,127336127	127313559,127318127,127320778,127325095,127332349,127333121,127335333,127336222	0.923077
testis_male_adult_37_years	chr15	34588450	34588453	34588452	-	High_confidence	98	198	268	11.978499	5.894977	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.555970
testis_male_adult_37_years	chr1	217826232	217826279	217826232	-	RAMPAGE_only	25	25	82	3.665063	5.018149	chr1	217826034	217826413	LTR|ERVL-MaLR|MLT1B	-	chr1	217781197	217785120	SPATA17-AS1|NR_125784.1	-	217781197,217782124,217784961	217781283,217782299,217785120	0.560976
testis_male_adult_37_years	chr7	32676255	32676256	32676255	-	RAMPAGE_only	6	6	7	0.312871	2.584963	chr7	32676210	32676764	LTR|ERVL-MaLR|MLT1G	+	chr7	32580938	32719168	DPY19L1P1|NR_036680.1	-	32580938,32581571,32585976,32590878,32593183,32620403,32621012,32623360,32632542,32635251,32639273,32655986,32675931,32676787,32678992,32716717,32719135	32581313,32581664,32586136,32591004,32593306,32620484,32621072,32623439,32632620,32635351,32639365,32656044,32676025,32676908,32679130,32716809,32719168	0.714286
testis_male_adult_37_years	chr10	2014172	2014185	2014179	-	High_confidence	14	14	48	2.145403	4.942783	chr10	2013902	2014254	LTR|ERVL-MaLR|MLT1A0	+	chr10	2005472	2014348	LINC00700|NR_040253.2	-	2005472,2013246,2014134	2007143,2013458,2014348	0.916667
testis_male_adult_37_years	chr10	46370326	46370327	46370326	+	High_confidence	35	35	38	1.698444	4.260280	chr10	46370126	46370461	LTR|ERVK|LTR14A	+	chr10	46370346	46373563	FAM25BP|ENST00000624613.1	+	46370346,46371138,46373376	46370500,46371201,46373563	0.789474
testis_male_adult_37_years	chr4	87524562	87524584	87524583	-	RAMPAGE_only	4	4	14	0.625742	3.807355	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87494416	87528619	SPARCL1|ENST00000535835.5	-	87494416,87494980,87499520,87504821,87528554	87494598,87495127,87499585,87504923,87528619	0.642857
testis_male_adult_37_years	chr19	20611504	20611523	20611504	+	High_confidence	6	6	11	0.491655	2.521928	chr19	20611050	20611625	LTR|ERV1|LTR61	+	chr19	20611558	20615389	AC010636.1|ENST00000598116.1	+	20611558,20615058	20611855,20615389	0.909091
testis_male_adult_37_years	chr4	73080826	73080862	73080861	-	High_confidence	6	6	23	1.028006	4.106603	chr4	73080811	73080939	SINE|Alu|FAM	-	chr4	73077368	73080810	ANKRD17|ENST00000510127.1	-	73077368,73078641,73080720	73077533,73078890,73080810	0.782609
testis_male_adult_37_years	chr9	68975842	68975865	68975845	-	High_confidence	13	13	80	3.575671	5.327333	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.662500
testis_male_adult_37_years	chr2	212429184	212429219	212429218	-	High_confidence	14	14	34	1.519660	4.748940	chr2	212428936	212429403	LTR|ERVL|LTR33	-	chr2	211750698	212429247	ERBB4|ENST00000435846.1	-	211750698,211788024,211947429,212124751,212429158	211750704,211788159,211947616,212124903,212429247	0.735294
testis_male_adult_37_years	chr5	62196850	62196869	62196850	+	High_confidence	3	3	12	0.536351	3.418296	chr5	62196362	62196945	LTR|ERV1|MER4A1_	-	chr5	62196907	62198424	STRG.93825.1	+	62196907,62197890	62197152,62198424	0.916667
testis_male_adult_37_years	chr1	235264588	235264602	235264588	-	RAMPAGE_only	3	3	8	0.357567	2.807355	chr1	235264454	235264642	SINE|MIR|MIR	+	chr1	235166894	235327487	ARID4B|NM_001206794.1	-	235166894,235172617,235175183,235177799,235181584,235194012,235196030,235213768,235219792,235220301,235221564,235223165,235224702,235229230,235231112,235234412,235240312,235246419,235252729,235255659,235257159,235260641,235326913,235327159	235168652,235172764,235175399,235177913,235182793,235194211,235196115,235214026,235219968,235220545,235221662,235223260,235224775,235229385,235231189,235234492,235240451,235246511,235252809,235255750,235257225,235260752,235326968,235327487	0.625000
testis_male_adult_37_years	chr6	53503095	53503144	53503108	+	High_confidence	16	16	51	2.279490	4.804491	chr6	53503031	53503407	LTR|ERVL-MaLR|MLT1A0	+	chr6	53503184	53506919	AL033397.2|ENST00000508884.1	+	53503184,53506153,53506797	53503328,53506434,53506919	0.764706
testis_male_adult_37_years	chr7	40218916	40218925	40218924	+	High_confidence	43	43	65	2.905233	5.145144	chr7	40218458	40219346	LTR|ERV1|LTR12D	+	chr7	40218912	40860631	STRG.130124.6	+	40218912,40237634,40316759,40449286,40459100,40496283,40684055,40749433,40860315	40219361,40237726,40316855,40449358,40459198,40496386,40684133,40749497,40860631	0.953846
testis_male_adult_37_years	chr13	92484596	92484603	92484602	+	High_confidence	11	12	19	0.849222	3.905765	chr13	92484149	92484604	DNA|TcMar-Tigger|Tigger3b	-	chr13	92484605	92510094	GPC5-IT1|ENST00000416664.1	+	92484605,92509512	92484681,92510094	0.789474
testis_male_adult_37_years	chr7	17900170	17900193	17900191	-	High_confidence	23	29	77	3.441584	5.621198	chr7	17899106	17901898	LINE|L1|L1M1	-	chr7	17888155	17900106	SNX13|ENST00000492626.5	-	17888155,17891545,17893331,17897333,17897843,17898826	17890484,17891635,17893434,17897446,17897884,17900106	0.896104
testis_male_adult_37_years	chr21	32308707	32308730	32308707	-	High_confidence	15	18	34	1.519660	4.801970	chr21	32308651	32308918	LTR|ERVL-MaLR|MLT1M	+	chr21	32306463	32308737	AP000266.1|ENST00000450936.1	-	32306463,32308518	32306826,32308737	0.647059
testis_male_adult_37_years	chr22	26677667	26677687	26677686	+	RAMPAGE_only	3	4	9	0.402263	3.169925	chr22	26677521	26677722	SINE|MIR|MIRb	+	chr22	26672842	26780893	MIATNB|NR_110543.1	+	26672842,26717252,26774155,26776826,26778455,26779883	26672987,26717459,26774217,26776954,26778585,26780893	0.888889
testis_male_adult_37_years	chr13	36789320	36789335	36789334	+	High_confidence	7	7	19	0.849222	3.787144	chr13	36789383	36789656	LTR|ERVL|LTR79	+	chr13	36789317	36790528	STRG.213273.1	+	36789317,36790362	36789502,36790528	0.578947
testis_male_adult_37_years	chr16	58880315	58880344	58880319	-	High_confidence	14	16	73	3.262800	5.017922	chr16	58880114	58880623	LTR|ERVL-MaLR|MLT1J	-	chr16	58847807	58880213	AC092378.2|ENST00000569328.1	-	58847807,58879984,58880167	58848153,58880037,58880213	0.808219
testis_male_adult_37_years	chr10	9183620	9183638	9183636	-	High_confidence	15	32	57	2.547666	5.104528	chr10	9183166	9184557	LTR|ERV1|LTR12C	+	chr10	9037316	9183691	STRG.170423.1	-	9037316,9065362,9176070,9183154	9039611,9065439,9176220,9183691	0.824561
testis_male_adult_37_years	chr13	54799998	54800078	54800047	+	RAMPAGE_only	12	13	60	2.681753	4.454633	chr13	54799141	54800235	LTR|ERV1|LTR12E	-	chr13	54798936	54801623	STRG.215200.1	+	54798936,54800654	54800259,54801623	0.916667
testis_male_adult_37_years	chr6	28984707	28984733	28984727	+	High_confidence	5	5	22	0.983310	3.879664	chr6	28984677	28984982	SINE|Alu|AluY	-	chr6	28985687	28988536	STRG.110739.1	+	28985687,28986041,28986312,28986676,28988299	28985884,28986232,28986506,28986879,28988536	0.636364
testis_male_adult_37_years	chr2	121902533	121902542	121902533	+	High_confidence	4	4	9	0.402263	2.750000	chr2	121902488	121902606	LINE|L2|L2a	-	chr2	121902275	121964119	STRG.35665.2	+	121902275,121944333,121962461	121902989,121962425,121964119	0.777778
testis_male_adult_37_years	chr21	28048446	28048447	28048446	+	High_confidence	25	26	31	1.385573	4.031402	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.935484
testis_male_adult_37_years	chr1	105956715	105956732	105956715	+	High_confidence	30	33	50	2.234795	4.549275	chr1	105956478	105956938	LTR|ERVL|MER70A	+	chr1	105956715	106042738	AL355306.2|ENST00000635395.1	+	105956715,105965679,106022017,106038349,106041566,106041831	105956847,105965822,106022141,106038604,106041651,106042738	0.720000
testis_male_adult_37_years	chr3	177272093	177272094	177272093	+	RAMPAGE_only	5	5	8	0.357567	3.000000	chr3	177270695	177272291	LTR|ERV1|LTR12C	-	chr3	177294441	177323418	LINC00501|ENST00000425388.1	+	177294441,177321428	177294497,177323418	0.625000
testis_male_adult_37_years	chr17	16145211	16145228	16145227	-	RAMPAGE_only	3	3	7	0.312871	2.584963	chr17	16144879	16146306	Retroposon|SVA|SVA_B	+	chr17	16126131	16194611	STRG.251579.32	-	16126131,16137310,16139007,16143605,16146375,16149450,16151945,16153338,16158759,16164978,16171802,16186553,16194461	16126209,16138212,16139186,16143696,16146548,16149517,16151998,16153395,16158873,16165161,16171995,16186687,16194611	0.571429
testis_male_adult_37_years	chr6	26521746	26521797	26521746	-	High_confidence	3	4	21	0.938614	4.106603	chr6	26521567	26521696	LINE|L1|L1ME5	-	chr6	26521132	26522738	STRG.110611.1	-	26521132	26522738	0.904762
testis_male_adult_37_years	chr8	32026201	32026251	32026201	+	High_confidence	8	8	62	2.771145	5.520581	chr8	32026065	32026218	SINE|Alu|AluYa5	-	chr8	32026217	32139477	NRG1-IT1|NR_104157.1	+	32026217,32029378,32139214	32026364,32029485,32139477	0.596774
testis_male_adult_37_years	chr4	86903674	86903709	86903674	-	High_confidence	8	8	19	0.849222	3.932138	chr4	86903411	86904464	LTR|ERV1|LTR12D	-	chr4	86902857	86904470	STRG.77709.1	-	86902857	86904470	0.789474
testis_male_adult_37_years	chr1	9191047	9191053	9191047	+	High_confidence	5	5	9	0.402263	3.000000	chr1	9190766	9191145	LINE|L2|L2a	+	chr1	9191047	9191967	LNCTAM34A|ENST00000634966.1	+	9191047,9191392	9191124,9191967	0.777778
testis_male_adult_37_years	chr9	88077816	88077903	88077865	-	High_confidence	8	9	89	3.977934	5.051797	chr9	88077653	88078060	LTR|ERVL-MaLR|MLT1A	-	chr9	88066434	88077900	LOC102724156|NR_135137.1	-	88066434,88077382,88077722	88066781,88077483,88077900	0.921348
testis_male_adult_37_years	chr17	43508342	43508344	43508342	+	RAMPAGE_only	7	13	15	0.670438	3.240224	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	1.000000
testis_male_adult_37_years	chr17	69196443	69196478	69196445	-	RAMPAGE_only	5	9	23	1.028006	4.055958	chr17	69195559	69197005	Retroposon|SVA|SVA_B	-	chr17	69190905	69203920	STRG.257129.25	-	69190905,69193492,69193813,69194384,69196205,69201499	69193248,69193612,69193989,69194495,69197122,69203920	0.956522
testis_male_adult_37_years	chr2	188009447	188009469	188009449	-	High_confidence	5	8	13	0.581047	3.251629	chr2	188009327	188009639	LTR|ERVL-MaLR|THE1B	-	chr2	188008940	188009458	STRG.41935.1	-	188008940	188009458	0.846154
testis_male_adult_37_years	chr1	22428851	22428895	22428894	+	High_confidence	4	5	14	0.625742	3.664498	chr1	22428699	22428944	LTR|ERVL-MaLR|MLT1J	+	chr1	22428879	22531154	STRG.1921.2	+	22428879,22489879,22491399,22501491,22502298,22506048,22508000,22508529,22509099,22511178,22511675,22512923,22517299,22521495,22522376,22524217,22526201	22429014,22490645,22491533,22501684,22502441,22506241,22508137,22508731,22509233,22511347,22512134,22513130,22520275,22521658,22522463,22524444,22531154	0.857143
testis_male_adult_37_years	chr15	84569735	84569758	84569735	-	High_confidence	3	3	17	0.759830	3.969816	chr15	84569720	84570009	SINE|Alu|AluSx1	+	chr15	84526780	84570700	UBE2Q2P1|ENST00000354771.8	-	84526780,84527618,84534179,84538531,84539703,84542146,84546220,84554960,84561959,84570598	84526876,84527667,84534238,84538616,84539788,84542284,84546277,84555070,84562061,84570700	0.882353
testis_male_adult_37_years	chr4	187646335	187646370	187646342	-	High_confidence	64	64	307	13.721639	6.787991	chr4	187646065	187646513	DNA|TcMar-Tigger|MER44D	+	chr4	187592670	187646388	STRG.87758.1	-	187592670,187646209	187592927,187646388	0.612378
testis_male_adult_37_years	chr12	26737347	26737372	26737366	-	RAMPAGE_only	5	6	19	0.849222	3.721612	chr12	26737246	26737552	SINE|Alu|AluSg	-	chr12	26722437	26726013	ITPR2|ENST00000536627.1	-	26722437,26724655,26725649	26722555,26724742,26726013	0.684211
testis_male_adult_37_years	chr11	100715407	100715410	100715407	+	RAMPAGE_only	3	3	6	0.268175	2.584963	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100738442	100913524	ARHGAP42|ENST00000534060.5	+	100738442,100770342,100795104,100816714,100859553,100913451	100738498,100770438,100795166,100816856,100859625,100913524	0.500000
testis_male_adult_37_years	chr16	15711281	15711282	15711281	-	High_confidence	57	63	78	3.486280	5.176534	chr16	15711228	15711503	DNA|hAT-Charlie|MER113	+	chr16	15703740	15711270	MYH11|ENST00000573908.1	-	15703740,15711112	15704123,15711270	0.923077
testis_male_adult_37_years	chr21	46142704	46142708	46142707	-	High_confidence	267	269	498	22.258554	6.079754	chr21	46142201	46143045	LTR|ERV1|LTR12	-	chr21	46136261	46142741	FTCD|ENST00000460011.5	-	46136261,46136914,46137238,46138507,46142108	46136494,46137073,46137334,46138646,46142741	0.957831
testis_male_adult_37_years	chr6	11933065	11933103	11933102	-	High_confidence	8	8	44	1.966619	4.118890	chr6	11932842	11934427	LTR|ERV1|LTR12C	+	chr6	11932669	11933237	STRG.108408.1	-	11932669	11933237	0.818182
testis_male_adult_37_years	chr12	9407471	9407507	9407471	-	High_confidence	9	9	29	1.296181	4.282484	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9397061	9406516	STRG.198588.2	-	9397061,9397614,9398381,9399794,9401746,9402426,9406307	9397214,9397689,9398484,9400326,9401859,9402556,9406516	0.586207
testis_male_adult_37_years	chr10	18584412	18584440	18584412	-	RAMPAGE_only	8	8	46	2.056011	5.047409	chr10	18583820	18584476	LTR|ERV1|LTR36	+	chr10	18545560	18651622	NSUN6|ENST00000377304.6	-	18545560,18548111,18551822,18585948,18596207,18609844,18614459,18616183,18642475,18648489,18651128	18546145,18548237,18551971,18586093,18596327,18609926,18614613,18616293,18642555,18648645,18651622	0.673913
testis_male_adult_37_years	chr6	157830611	157830660	157830617	+	RAMPAGE_only	8	8	35	1.564356	4.476064	chr6	157830586	157830766	DNA|hAT-Charlie|MER3	+	chr6	157823263	157945077	SNX9|ENST00000392185.7	+	157823263,157867546,157873101,157875050,157896826,157901897,157906127,157909664,157909907,157921530,157927110,157928598,157932194,157935963,157937433,157938632,157940882,157942790	157823446,157867633,157873176,157875176,157896998,157902045,157906212,157909790,157910025,157921661,157927214,157928702,157932272,157936040,157937523,157938747,157940974,157945077	0.885714
testis_male_adult_37_years	chr4	147614314	147614331	147614330	-	RAMPAGE_only	7	7	23	1.028006	4.186704	chr4	147613947	147614536	LTR|ERVL-MaLR|MLT1G	-	chr4	147539400	147539970	STRG.84211.2	-	147539400	147539970	0.695652
testis_male_adult_37_years	chr4	138553572	138553610	138553609	-	RAMPAGE_only	4	4	12	0.536351	3.584963	chr4	138553482	138553750	LTR|ERV1|LTR12C	+	chr4	138360668	138361007	STRG.82838.1	-	138360668	138361007	0.500000
testis_male_adult_37_years	chr5	151709473	151709494	151709493	+	RAMPAGE_only	5	8	14	0.625742	3.324863	chr5	151709032	151709668	LTR|ERV1|LTR9D	+	chr5	151676972	151724782	CLMAT3|ENST00000518905.1	+	151676972,151679219,151724564	151677047,151679336,151724782	0.714286
testis_male_adult_37_years	chr15	93900598	93900599	93900598	-	High_confidence	53	53	76	3.396888	5.596483	chr15	93899800	93901385	LTR|ERV1|MER52A	-	chr15	93899262	93900337	LINC01579|ENST00000554261.1	-	93899262,93900035	93899336,93900337	0.671053
testis_male_adult_37_years	chr8	109329922	109329926	109329922	-	High_confidence	3	3	8	0.357567	2.807355	chr8	109329908	109330059	LINE|L2|L2b	-	chr8	109240918	109329933	NUDCD1|NM_001128211.1	-	109240918,109245321,109271004,109275351,109280967,109289750,109293343,109296383,109322308,109329804	109243301,109245481,109271130,109275496,109281172,109289933,109293524,109296569,109322463,109329933	0.875000
testis_male_adult_37_years	chr14	83093369	83093370	83093369	+	High_confidence	50	51	70	3.128712	4.418589	chr14	83092200	83093785	LTR|ERV1|LTR12C	+	chr14	83093563	83093817	STRG.229753.1	+	83093563	83093817	0.928571
testis_male_adult_37_years	chr19	3062922	3062983	3062922	-	High_confidence	9	9	42	1.877227	4.753774	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.976190
testis_male_adult_37_years	chr12	53464795	53464834	53464815	+	RAMPAGE_only	5	5	27	1.206789	4.286790	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.851852
testis_male_adult_37_years	chr9	33375625	33375645	33375644	+	High_confidence	6	6	17	0.759830	3.852169	chr9	33375548	33375836	SINE|Alu|AluSx	-	chr9	33375203	33382085	STRG.160103.1	+	33375203,33381790	33375976,33382085	0.588235
testis_male_adult_37_years	chr7	103353956	103353957	103353956	+	High_confidence	10	10	14	0.625742	3.093069	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	1.000000
testis_male_adult_37_years	chr1	145834743	145834777	145834761	+	RAMPAGE_only	20	21	80	3.575671	4.850692	chr1	145834649	145834810	DNA|TcMar-Tigger|Tigger3c	-	chr1	145836536	145848261	STRG.12498.2	+	145836536,145836814,145837535,145838055,145839889,145840115,145840921,145842338,145846012,145846432,145846597,145847249,145847582,145848111	145836574,145836866,145837596,145838206,145839991,145840165,145841071,145845832,145846196,145846458,145846690,145847348,145847719,145848261	0.950000
testis_male_adult_37_years	chr3	52615423	52615438	52615437	-	High_confidence	4	5	12	0.536351	3.277613	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.833333
testis_male_adult_37_years	chr1	207153299	207153321	207153301	+	RAMPAGE_only	8	14	38	1.698444	4.760067	chr1	207153158	207153641	LINE|L1|L1M1	-	chr1	207165495	207183910	C4BPAP1|ENST00000415474.1	+	207165495,207166594,207167321,207171623,207171878,207173616,207175136,207178662,207181374,207182547,207183661	207165652,207166774,207167429,207171707,207172073,207173799,207175334,207178857,207181542,207182723,207183910	0.500000
testis_male_adult_37_years	chr22	24011756	24011757	24011756	+	High_confidence	24	24	24	1.072701	4.136842	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.875000
testis_male_adult_37_years	chr7	19339290	19339320	19339290	+	High_confidence	3	4	18	0.804526	3.947703	chr7	19339194	19339503	LTR|ERV1|MER61A	+	chr7	19339146	19340852	STRG.127298.1	+	19339146	19340852	0.555556
testis_male_adult_37_years	chr15	67002431	67002432	67002431	-	RAMPAGE_only	13	14	19	0.849222	3.681881	chr15	67002340	67002853	LTR|ERVL-MaLR|MLT1F1	+	chr15	66984107	67059253	AC087482.1|ENST00000558071.2	-	66984107,66985441,66986367,66987157,67059139	66984234,66985483,66986497,66987647,67059253	1.000000
testis_male_adult_37_years	chr1	51403428	51403433	51403432	-	RAMPAGE_only	13	13	29	1.296181	3.810081	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.793103
testis_male_adult_37_years	chr8	124941979	124942044	124942043	+	High_confidence	16	16	87	3.888543	5.498990	chr8	124941950	124942076	LTR|ERVL-MaLR|MLT1I	+	chr8	124942054	124951097	LINC00964|ENST00000510897.6	+	124942054,124943269,124946054,124950815	124942724,124945746,124946159,124951097	0.942529
testis_male_adult_37_years	chr9	89574552	89574559	89574558	-	RAMPAGE_only	4	4	8	0.357567	2.750000	chr9	89574399	89574734	LTR|ERVL-MaLR|MLT1A	-	chr9	89563536	89604060	AL161910.1|ENST00000648620.1	-	89563536,89564595,89565096,89567620,89600568,89602739,89603948	89564516,89564821,89565943,89567891,89600734,89602861,89604060	0.875000
testis_male_adult_37_years	chr12	88005963	88005985	88005984	-	RAMPAGE_only	4	4	10	0.446959	2.503258	chr12	88005903	88006215	SINE|Alu|AluY	-	chr12	87998034	88027963	C12orf50|ENST00000551163.2	-	87998034,88026487,88026950,88027763	87998190,88026608,88027070,88027963	0.500000
testis_male_adult_37_years	chr17	54712832	54712838	54712837	-	High_confidence	77	78	129	5.765770	5.919905	chr17	54712645	54713236	LTR|ERV1|LTR12D	-	chr17	54680807	54712848	STRG.255394.2	-	54680807,54712213	54681793,54712848	0.891473
testis_male_adult_37_years	chr8	11643403	11643407	11643403	+	High_confidence	7	8	14	0.625742	3.521641	chr8	11643373	11643664	LINE|L1|L1MC4a	+	chr8	11643027	11649539	STRG.142785.1	+	11643027,11647336	11643519,11649539	1.000000
testis_male_adult_37_years	chr3	55367906	55367945	55367923	-	High_confidence	4	6	22	0.983310	3.754442	chr3	55367691	55367952	LTR|ERVL-MaLR|MLT1K	+	chr3	55367644	55368000	STRG.53527.1	-	55367644	55368000	0.727273
testis_male_adult_37_years	chr14	102235451	102235481	102235458	-	High_confidence	29	33	122	5.452899	5.397487	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.868852
testis_male_adult_37_years	chr4	125229499	125229500	125229499	+	High_confidence	9	9	10	0.446959	3.169925	chr4	125228816	125230153	LTR|ERV1|LTR12C	-	chr4	125229518	125268352	STRG.81377.2	+	125229518,125268236	125230203,125268352	0.500000
testis_male_adult_37_years	chr18	30145408	30145470	30145467	-	RAMPAGE_only	2	2	12	0.536351	3.084963	chr18	30145165	30145634	LTR|ERV1|MER48	+	chr18	30144382	30146550	STRG.260551.2	-	30144382	30146550	0.916667
testis_male_adult_37_years	chr10	29142585	29142652	29142628	+	High_confidence	16	22	127	5.676378	5.442149	chr10	29142530	29143374	LTR|ERV1|LTR1A2	+	chr10	29142612	29144044	STRG.172484.2	+	29142612	29144044	0.984252
testis_male_adult_37_years	chr10	31355180	31355181	31355180	+	RAMPAGE_only	4	4	7	0.312871	2.807355	chr10	31355121	31355304	SINE|MIR|MIRc	-	chr10	31322009	31358590	ZEB1|ENST00000558832.5	+	31322009,31355143,31358144	31322084,31355192,31358590	0.857143
testis_male_adult_37_years	chr9	121281850	121281892	121281850	+	RAMPAGE_only	28	37	87	3.888543	5.530835	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.540230
testis_male_adult_37_years	chr11	119046587	119046606	119046594	-	RAMPAGE_only	4	6	25	1.117397	3.593270	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119044314	119048825	STRG.195075.12	-	119044314,119045780,119046416,119046561,119047733,119047946,119048247,119048713	119045654,119045831,119046467,119046802,119047818,119048080,119048563,119048825	1.000000
testis_male_adult_37_years	chr1	64202952	64202994	64202974	+	High_confidence	3	3	16	0.715134	3.875000	chr1	64202906	64203191	LINE|L2|L2c	-	chr1	64202999	64267249	STRG.6384.6	+	64202999,64205638,64206763,64210741,64214814,64220858,64241651,64260602,64267023	64204116,64205720,64206856,64210839,64214932,64220907,64241733,64260694,64267249	1.000000
testis_male_adult_37_years	chr3	166991014	166991058	166991057	-	High_confidence	6	7	23	1.028006	4.095795	chr3	166990625	166991089	LTR|ERV1|MER50B	+	chr3	166990437	166990871	STRG.65340.1	-	166990437	166990871	0.608696
testis_male_adult_37_years	chr15	100350818	100350849	100350848	+	RAMPAGE_only	81	83	183	8.179348	4.916573	chr15	100350744	100351516	DNA|TcMar-Tigger|Tigger3	-	chr15	100349364	100352128	STRG.241146.1	+	100349364,100351678	100350945,100352128	0.983607
testis_male_adult_37_years	chr14	21330375	21330376	21330375	+	RAMPAGE_only	7	8	9	0.402263	2.750000	chr14	21330414	21330684	SINE|Alu|AluSg	+	chr14	21323923	21351298	RPGRIP1|ENST00000553927.1	+	21323923,21325231,21325830,21327622,21328423,21330248,21334604,21343035,21345112,21348171,21351103	21325070,21325383,21326173,21327807,21328627,21330387,21334705,21343228,21345197,21348302,21351298	0.888889
testis_male_adult_37_years	chr20	23818068	23818069	23818068	+	High_confidence	14	14	14	0.625742	3.378783	chr20	23817833	23818495	LTR|ERV1|LTR12_	+	chr20	23818094	23818467	STRG.274356.1	+	23818094	23818467	0.785714
testis_male_adult_37_years	chr13	102861005	102861032	102861031	+	High_confidence	6	6	11	0.491655	3.321928	chr13	102860986	102861288	SINE|Alu|AluSq10	-	chr13	102861262	102868257	STRG.220577.10	+	102861262,102862029,102865666,102866264,102866631,102868112	102861714,102863103,102865911,102866381,102866845,102868257	0.909091
testis_male_adult_37_years	chr7	2762307	2762318	2762316	+	High_confidence	9	12	20	0.893918	3.584184	chr7	2762313	2762473	SINE|MIR|MIRc	-	chr7	2761949	2762645	STRG.125258.1	+	2761949	2762645	0.750000
testis_male_adult_37_years	chr19	53086996	53087020	53087002	-	High_confidence	21	23	73	3.262800	5.506934	chr19	53086959	53087288	LINE|L2|L2a	-	chr19	53066613	53087037	ZNF160|NM_001322136.1	-	53066613,53074139,53075056,53086261,53086930	53070262,53074268,53075183,53086321,53087037	0.808219
testis_male_adult_37_years	chr6	87010795	87010833	87010810	-	RAMPAGE_only	3	3	10	0.446959	3.169925	chr6	87009057	87010801	Retroposon|SVA|SVA_F	-	chr6	86936893	86941660	STRG.116328.5	-	86936893,86940410	86940028,86941660	0.800000
testis_male_adult_37_years	chr1	233177328	233177366	233177365	-	High_confidence	3	3	10	0.446959	2.947703	chr1	233177043	233177630	LTR|ERV1|LTR10C	+	chr1	233095656	233177835	PCNX2|ENST00000486012.5	-	233095656,233135012,233139713,233161270,233177801	233095863,233135190,233139855,233161363,233177835	0.700000
testis_male_adult_37_years	chr6	83086951	83086993	83086951	+	RAMPAGE_only	4	4	12	0.536351	2.845351	chr6	83086937	83087482	LINE|L2|L2a	-	chr6	83067651	83171350	STRG.115864.3	+	83067651,83096924,83100704,83108909,83110124,83118887,83119747,83120682,83125499,83128886,83130122,83132175,83134186,83135618,83137172,83139999,83140220,83141920,83145523,83147235,83148758,83151592,83151882,83152287,83153510,83153893,83154179,83155950,83157181,83158566,83159795,83162789,83164659,83167861,83169477,83170288	83096823,83097115,83100886,83109080,83113421,83118987,83119857,83124819,83125733,83129508,83130397,83132328,83134287,83135878,83139162,83140111,83140403,83142046,83145658,83147291,83148863,83151659,83152027,83152367,83153620,83154043,83154241,83156103,83157318,83158622,83159960,83162919,83164719,83168756,83169534,83171350	0.916667
testis_male_adult_37_years	chr5	166926369	166926370	166926369	-	High_confidence	149	149	163	7.285430	6.173750	chr5	166925926	166927511	LTR|ERV1|LTR12C	-	chr5	166905221	166926370	LINC01947|ENST00000523742.1	-	166905221,166907924,166925962	166905292,166908011,166926370	0.754601
testis_male_adult_37_years	chr8	56656467	56656490	56656489	-	High_confidence	6	6	22	0.983310	4.297079	chr8	56656315	56656492	SINE|tRNA-RTE|MamSINE1	-	chr8	56639900	56656465	AC009597.1|ENST00000521215.1	-	56639900,56645631,56654907,56656291	56639952,56645847,56655049,56656465	0.590909
testis_male_adult_37_years	chr3	148280878	148280917	148280886	+	High_confidence	39	40	113	5.050636	5.855157	chr3	148279782	148281080	LTR|ERV1|LTR12C	-	chr3	148280890	148362254	STRG.63205.1	+	148280890,148288934,148312110,148362197	148281109,148289043,148312252,148362254	0.707965
testis_male_adult_37_years	chr2	164995115	164995156	164995118	+	High_confidence	12	13	42	1.877227	4.703056	chr2	164993938	164995321	LTR|ERV1|LTR12C	-	chr2	164995147	165091387	STRG.39453.1	+	164995147,165091119	164995328,165091387	0.500000
testis_male_adult_37_years	chr2	174199693	174199726	174199693	-	RAMPAGE_only	9	10	16	0.715134	3.640224	chr2	174198784	174200263	DNA|hAT-Charlie|Charlie1a	+	chr2	174082009	174217946	OLA1|ENST00000429575.1	-	174082009,174123179,174123594,174141824,174217871	174082064,174123277,174123675,174142000,174217946	0.812500
testis_male_adult_37_years	chr2	200649207	200649229	200649207	+	RAMPAGE_only	3	3	8	0.357567	2.500000	chr2	200643422	200649620	LINE|L1|L1PB1	-	chr2	200609242	200671136	AOX1|ENST00000485106.5	+	200609242,200612608,200613803,200615970,200621119,200623860,200627352,200634790,200636910,200638214,200641097,200642609,200650973,200656841,200659164,200659994,200661578,200662854,200666686,200668614,200669574,200670628	200609414,200612793,200613966,200616063,200621246,200623983,200627449,200634915,200637044,200638302,200641184,200642801,200651201,200656937,200659293,200660069,200661631,200662969,200666752,200668803,200669742,200671136	0.875000
testis_male_adult_37_years	chr1	179322456	179322490	179322456	+	RAMPAGE_only	4	4	18	0.804526	3.683542	chr1	179322375	179322519	SINE|Alu|AluSx3	-	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	1.000000
testis_male_adult_37_years	chr11	75979577	75979605	75979604	+	High_confidence	4	4	9	0.402263	2.750000	chr11	75974665	75980018	LINE|L1|L1PA6	-	chr11	75979525	76142651	UVRAG|ENST00000531818.5	+	75979525,75983386,76004004,76007533,76008806,76016814,76065709,76115923,76140710	75980038,75983513,76004089,76007621,76008867,76016980,76065788,76116015,76142651	0.777778
testis_male_adult_37_years	chr21	25801375	25801376	25801375	+	RAMPAGE_only	8	8	12	0.536351	2.792481	chr21	25801279	25802192	LINE|L1|L1MEi	+	chr21	25779122	25855421	STRG.280413.2	+	25779122,25816863,25843819	25813922,25816985,25855421	1.000000
testis_male_adult_37_years	chr17	59620042	59620144	59620042	+	High_confidence	7	13	62	2.771145	5.055751	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.870968
testis_male_adult_37_years	chr1	179312569	179312590	179312569	+	RAMPAGE_only	20	24	49	2.190099	5.063290	chr1	179312548	179312870	LTR|ERVL|LTR33	+	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.877551
testis_male_adult_37_years	chr2	186963165	186963166	186963165	+	High_confidence	540	546	767	34.281749	4.583994	chr2	186962104	186963583	LTR|ERV1|LTR12C	+	chr2	186962965	186969217	STRG.41560.1	+	186962965,186965714	186963946,186969217	0.976532
testis_male_adult_37_years	chr5	68189849	68189886	68189885	+	High_confidence	66	66	109	4.871852	6.049897	chr5	68189797	68189938	LINE|L2|L2b	-	chr5	68189875	68198407	LOC102467655|NR_105003.1	+	68189875,68196369,68198189	68189991,68196489,68198407	0.532110
testis_male_adult_37_years	chr6	68040440	68040460	68040440	+	High_confidence	4	5	15	0.670438	3.906891	chr6	68040221	68040931	LTR|ERV1|LTR30	-	chr6	68040429	68041648	STRG.114234.3	+	68040429	68041648	0.666667
testis_male_adult_37_years	chr11	8784518	8784525	8784518	+	High_confidence	14	14	33	1.474964	4.127283	chr11	8784560	8784859	SINE|Alu|AluSx	+	chr11	8784540	8810229	AC026894.1|ENST00000533843.1	+	8784540,8785155,8810076	8784557,8785462,8810229	0.757576
testis_male_adult_37_years	chr8	111741951	111741966	111741965	+	High_confidence	6	6	16	0.715134	3.875000	chr8	111741752	111742149	LTR|ERV1|MER110A	-	chr8	111741974	111756822	LINC02237|ENST00000650619.1	+	111741974,111745441,111754396,111756305	111742083,111745607,111754545,111756822	0.687500
testis_male_adult_37_years	chr4	158201456	158201490	158201468	-	High_confidence	51	59	179	8.000565	6.267125	chr4	158201406	158201936	LTR|ERVL-MaLR|MLT1F	+	chr4	158199104	158201502	STRG.84838.1	-	158199104,158200323,158201440	158199350,158200458,158201502	0.798883
testis_male_adult_37_years	chr4	86453161	86453203	86453202	-	High_confidence	36	39	357	15.956433	5.780617	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.899160
testis_male_adult_37_years	chr10	101457310	101457311	101457310	+	RAMPAGE_only	58	61	83	3.709759	4.571947	chr10	101456945	101457574	DNA|TcMar-Tigger|MER44D	-	chr10	101354533	101526083	BTRC|ENST00000370183.2	+	101354533,101430344,101461980,101479367,101521638,101526012	101354609,101430452,101462058,101479457,101521870,101526083	0.915663
testis_male_adult_37_years	chr17	19659552	19659553	19659552	+	High_confidence	7	7	10	0.446959	2.721928	chr17	19659562	19659866	SINE|Alu|AluJb	+	chr17	19659572	19663499	ALDH3A2|ENST00000574078.2	+	19659572,19661126,19663332	19659699,19661268,19663499	0.700000
testis_male_adult_37_years	chr12	26011711	26011729	26011718	+	High_confidence	35	35	93	4.156718	5.772641	chr12	26011520	26011898	LTR|ERVL-MaLR|MLT1A0	+	chr12	26011735	26065053	RASSF8|ENST00000542004.5	+	26011735,26055235,26064497	26011821,26055446,26065053	0.709677
testis_male_adult_37_years	chr6	68920456	68920467	68920456	+	High_confidence	46	46	127	5.676378	5.720062	chr6	68920235	68920537	SINE|Alu|AluY	+	chr6	68920472	69239226	STRG.114486.3	+	68920472,68930558,68936518,68943829,68956023,68956644,68974762,68975233,68993767,69014037,69018390,69048184,69049270,69062933,69075994,69233289,69235031,69239123	68920609,68930669,68936680,68943994,68956188,68956809,68974864,68975340,68993962,69014106,69018499,69048334,69049346,69063036,69076038,69233416,69235135,69239226	0.897638
testis_male_adult_37_years	chr12	547143	547176	547143	+	High_confidence	9	9	28	1.251485	4.423252	chr12	547182	547492	LINE|L1|L1MA4A	+	chr12	547638	563478	B4GALNT3|ENST00000647602.1	+	547638,548230,549768,550921,552062,552466,556546,557607,557890,558507,559294,561342	548102,548297,549912,551031,552163,553983,556866,557761,558088,558661,559421,563478	0.642857
testis_male_adult_37_years	chr2	231985927	231985945	231985944	+	RAMPAGE_only	14	14	22	0.983310	3.725651	chr2	231985784	231986350	LTR|ERVL|MLT2B3	+	chr2	231961707	232277395	STRG.46363.4	+	231961707,232014834,232015513,232024276,232029978,232087486,232130618,232136471,232163458,232198526,232210325,232238532,232249238,232263206	231961765,232014979,232015671,232024330,232030080,232087721,232130719,232136719,232163632,232198776,232210405,232238645,232249346,232277395	0.863636
testis_male_adult_37_years	chr6	64218236	64218260	64218259	-	High_confidence	3	5	9	0.402263	2.725481	chr6	64218042	64218686	LTR|ERV1|MER67B	+	chr6	64217472	64218306	STRG.114283.1	-	64217472	64218306	0.555556
testis_male_adult_37_years	chr7	21851257	21851258	21851257	+	High_confidence	10	10	10	0.446959	2.921928	chr7	21851065	21851438	LTR|ERVL-MaLR|THE1C	+	chr7	21851161	21861970	DNAH11|ENST00000607413.5	+	21851161,21852466,21854314,21861852	21851320,21852631,21854455,21861970	1.000000
testis_male_adult_37_years	chr3	172867572	172867573	172867572	+	High_confidence	358	359	415	18.548795	5.849983	chr3	172866600	172867986	LTR|ERV1|LTR12C	+	chr3	172867530	172877271	STRG.66035.3	+	172867530,172871382,172873458	172868204,172871527,172877271	0.978313
testis_male_adult_37_years	chr16	67183444	67183467	67183466	-	High_confidence	9	9	17	0.759830	3.875000	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.882353
testis_male_adult_37_years	chr15	42583107	42583128	42583107	+	RAMPAGE_only	12	12	31	1.385573	4.694019	chr15	42582899	42583140	SINE|MIR|MIRb	+	chr15	42575669	42720859	STRG.234669.3	+	42575669,42583345,42585520,42634855,42637906,42638025,42651015,42652519,42661157,42662793,42663280,42663819,42665785,42669157,42674439,42674826,42675871,42681421,42682103,42684115,42694527,42695139,42695742,42716676,42716926,42717730,42717976,42718434,42718751,42719472	42575762,42583415,42585637,42634972,42637939,42638812,42651085,42652592,42661225,42662891,42663490,42665330,42665848,42669337,42674491,42675746,42675975,42681612,42682575,42694342,42694725,42695323,42695880,42716764,42717048,42717795,42718179,42718514,42718910,42720859	0.709677
testis_male_adult_37_years	chr14	29064555	29064577	29064576	-	High_confidence	30	33	98	4.380197	5.294724	chr14	29064362	29064725	LTR|ERVL-MaLR|MLT1A0	-	chr14	29063535	29064568	STRG.223295.2	-	29063535	29064568	0.500000
testis_male_adult_37_years	chr22	50582017	50582031	50582030	-	High_confidence	3	4	6	0.268175	2.584963	chr22	50582002	50582109	SINE|Alu|FLAM_C	-	chr22	50581606	50582420	CHKB|ENST00000465842.1	-	50581606,50582248	50581862,50582420	0.833333
testis_male_adult_37_years	chr4	83803124	83803125	83803124	-	RAMPAGE_only	4	4	7	0.312871	2.521641	chr4	83802655	83803828	LINE|L1|L1M3c	+	chr4	83796435	84284327	AC079160.1|ENST00000513489.5	-	83796435,83811488,83935622,84012054,84243110,84284205	83796616,83811645,83935730,84012119,84243216,84284327	0.571429
testis_male_adult_37_years	chr7	158863367	158863393	158863386	+	RAMPAGE_only	16	17	45	2.011315	4.941744	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.800000
testis_male_adult_37_years	chr1	159397468	159397481	159397480	+	RAMPAGE_only	21	21	36	1.609052	4.629004	chr1	159396352	159399289	LINE|L1|L1MA1	+	chr1	159437844	159443078	OR10J1|ENST00000642080.1	+	159437844,159439775	159438044,159443078	0.777778
testis_male_adult_37_years	chr5	112862366	112862369	112862368	+	High_confidence	51	64	90	4.022630	5.361313	chr5	112862040	112862465	LTR|ERV1|MER51A	-	chr5	112862361	112867724	SRP19|ENST00000506987.1	+	112862361,112864456,112864620,112867403	112862583,112864528,112864732,112867724	0.977778
testis_male_adult_37_years	chr3	181550760	181550781	181550767	+	High_confidence	3	3	21	0.938614	4.221928	chr3	181550497	181551056	DNA|hAT-Charlie|MER119	+	chr3	181550772	181699883	SOX2-OT|ENST00000628211.2	+	181550772,181563719,181601310,181610860,181630854,181699597	181550826,181563928,181601389,181610929,181631004,181699883	0.619048
testis_male_adult_37_years	chr11	307757	307790	307757	+	High_confidence	2	2	9	0.402263	3.169925	chr11	307491	307788	SINE|Alu|AluY	-	chr11	307926	309392	IFITM2|ENST00000616316.1	+	307926,309012	308438,309392	1.000000
testis_male_adult_37_years	chr11	30912109	30912144	30912109	+	RAMPAGE_only	9	9	23	1.028006	4.201841	chr11	30911903	30912279	LTR|ERVL-MaLR|MSTC	+	chr11	30921384	30922220	STRG.185941.1	+	30921384	30922220	0.782609
testis_male_adult_37_years	chr5	23443528	23443529	23443528	+	High_confidence	5	7	8	0.357567	2.521641	chr5	23443334	23443684	LTR|ERVL-MaLR|THE1D	+	chr5	23443585	23526498	PRDM9|ENST00000635252.1	+	23443585,23462671,23493470,23509919,23517880,23521022,23522303,23522613,23523290,23524333,23526232	23443624,23462807,23493615,23510027,23517930,23521179,23522405,23522885,23523358,23524527,23526498	0.625000
testis_male_adult_37_years	chr13	77475542	77475596	77475593	+	High_confidence	5	5	23	1.028006	4.152391	chr13	77474476	77476020	LTR|ERV1|LTR12C	-	chr13	77475254	77608146	STRG.217366.1	+	77475254,77555856,77556595,77559803,77563830,77567679,77568294,77569370,77572123,77589143,77591394,77593513,77597544,77599328,77599688,77602064,77602653,77603075,77604355,77608055	77476057,77555918,77556713,77559863,77563899,77567748,77568333,77569451,77572189,77589224,77591460,77593573,77597589,77599388,77599748,77602124,77602713,77603135,77604415,77608146	0.869565
testis_male_adult_37_years	chr2	31803228	31803254	31803228	-	RAMPAGE_only	2	2	8	0.357567	2.500000	chr2	31803005	31803314	SINE|Alu|AluSx1	+	chr2	31707626	31804560	STRG.26161.4	-	31707626,31765048,31765242,31772762,31773764,31802946	31710268,31765151,31765353,31772922,31773886,31804560	0.625000
testis_male_adult_37_years	chr13	63841719	63841720	63841719	-	RAMPAGE_only	9	11	13	0.581047	3.022055	chr13	63841519	63842116	LTR|ERV1|HERVE-int	+	chr13	63837294	63843424	OR7E104P|ENST00000641745.1	-	63837294,63838159,63839069,63839748,63841522,63843313	63837442,63838238,63839225,63839824,63841623,63843424	0.692308
testis_male_adult_37_years	chr7	121062866	121062867	121062866	+	High_confidence	21	22	24	1.072701	4.136842	chr7	121062672	121063032	LTR|ERVL-MaLR|THE1B	+	chr7	121062764	121261918	CPED1|ENST00000423795.5	+	121062764,121064237,121097698,121099925,121124330,121125819,121127089,121128381,121130124,121133822,121136039,121140826,121141972,121236713,121244201,121261631	121062896,121064313,121097831,121100094,121124473,121125892,121127257,121128486,121130294,121133893,121136090,121141013,121142141,121236831,121244338,121261918	0.958333
testis_male_adult_37_years	chr19	58312270	58312284	58312283	+	RAMPAGE_only	3	3	7	0.312871	2.584963	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.714286
testis_male_adult_37_years	chr18	26157779	26157789	26157788	+	RAMPAGE_only	9	9	19	0.849222	3.932138	chr18	26157550	26157809	LINE|RTE-X|L4_B_Mam	-	chr18	26140085	26193355	PSMA8|ENST00000612461.1	+	26140085,26144558,26151857,26158121,26178829,26179067,26192318	26140109,26144685,26151982,26158244,26178949,26179130,26193355	0.894737
testis_male_adult_37_years	chr11	72758533	72758553	72758552	-	High_confidence	10	11	16	0.715134	3.106891	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72759309	STARD10|ENST00000537351.5	-	72754728,72755121,72755700,72757766,72758529,72759233	72754782,72755142,72755753,72757884,72758633,72759309	0.500000
testis_male_adult_37_years	chr16	21312261	21312262	21312261	-	High_confidence	137	137	139	6.212729	4.707827	chr16	21311846	21313345	LTR|ERV1|LTR12C	-	chr16	21311752	21312243	STRG.244124.1	-	21311752	21312243	0.964029
testis_male_adult_37_years	chr13	57216754	57216779	57216754	-	RAMPAGE_only	1	1	7	0.312871	2.584963	chr13	57216662	57216963	SINE|Alu|AluSc	+	chr13	57211701	57329603	STRG.215783.1	-	57211701,57216630,57310960	57213227,57216778,57329603	0.714286
testis_male_adult_37_years	chr2	218514429	218514447	218514446	-	High_confidence	19	19	36	1.609052	4.096892	chr2	218514118	218515155	LINE|L1|L1MC4a	-	chr2	218497768	218514428	USP37|ENST00000486242.1	-	218497768,218498025,218509978,218514259	218497857,218498157,218510140,218514428	1.000000
testis_male_adult_37_years	chrX	53576948	53576972	53576948	-	RAMPAGE_only	3	3	12	0.536351	3.459432	chrX	53576946	53576998	LTR|ERV1|LTR43-int	+	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.750000
testis_male_adult_37_years	chr12	56677390	56677397	56677396	-	RAMPAGE_only	5	5	9	0.402263	3.000000	chr12	56677353	56677930	DNA|hAT-Charlie|MER119	-	chr12	56663340	56687997	PTGES3|NR_104219.1	-	56663340,56664775,56665631,56670274,56671748,56672739,56672951,56687249	56664498,56664800,56666266,56670364,56671847,56672809,56673065,56687997	0.777778
testis_male_adult_37_years	chr4	44867427	44867456	44867455	+	RAMPAGE_only	3	4	7	0.312871	2.521641	chr4	44864689	44868696	LINE|L1|L1PA16	-	chr4	44965870	44985547	STRG.74285.1	+	44965870,44985249	44965953,44985547	0.857143
testis_male_adult_37_years	chr2	139410391	139410415	139410403	+	High_confidence	5	5	21	0.938614	4.201841	chr2	139410158	139411367	LTR|ERV1|LTR12C	+	chr2	139410329	139430763	STRG.37047.1	+	139410329,139430571	139411571,139430763	1.000000
testis_male_adult_37_years	chr5	23951339	23951372	23951347	+	High_confidence	23	24	131	5.855162	5.205490	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.900763
testis_male_adult_37_years	chr5	107494246	107494272	107494261	-	RAMPAGE_only	6	7	17	0.759830	3.577820	chr5	107494065	107495517	LTR|ERV1|LTR12C	+	chr5	107381237	107496160	STRG.98668.2	-	107381237,107387234,107387705,107427216,107494044	107381376,107387315,107387771,107427509,107496160	0.529412
testis_male_adult_37_years	chr4	58988156	58988172	58988156	-	High_confidence	37	38	71	3.173408	4.905111	chr4	58987578	58990646	LINE|L1|L1PA13	+	chr4	58987186	58988154	LOC105377245|NR_133940.1	-	58987186,58987815,58988103	58987684,58987889,58988154	0.830986
testis_male_adult_37_years	chr3	186760540	186760541	186760540	-	RAMPAGE_only	5	5	8	0.357567	2.807355	chr3	186760329	186760735	LTR|ERVL|MER21A	-	chr3	186717248	186757668	AC068631.1|ENST00000599314.5	-	186717248,186717556,186718466,186721219,186743702,186757608	186717422,186717622,186718569,186721416,186743841,186757668	0.625000
testis_male_adult_37_years	chr7	152553904	152553947	152553907	+	RAMPAGE_only	11	14	48	2.145403	4.843095	chr7	152553719	152554084	LTR|ERVL-MaLR|MSTA	+	chr7	152575907	152577150	STRG.141084.1	+	152575907	152577150	0.520833
testis_male_adult_37_years	chr10	9183358	9183370	9183369	-	High_confidence	5	5	10	0.446959	2.725481	chr10	9183166	9184557	LTR|ERV1|LTR12C	+	chr10	9037316	9183691	STRG.170423.1	-	9037316,9065362,9176070,9183154	9039611,9065439,9176220,9183691	0.800000
testis_male_adult_37_years	chr8	17891442	17891468	17891445	-	High_confidence	5	5	22	0.983310	3.884184	chr8	17891176	17891626	LTR|ERVL-MaLR|MLT1C	-	chr8	17864583	17891809	FGL1|ENST00000518650.5	-	17864583,17868547,17868915,17874018,17874361,17881998,17885491,17891680	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891809	0.545455
testis_male_adult_37_years	chr12	9391539	9391540	9391539	-	RAMPAGE_only	4	4	7	0.312871	2.584963	chr12	9391538	9391777	LINE|L1|L1ME3B	-	chr12	9371781	9381422	LOC101928030|NR_120481.1	-	9371781,9381351	9372032,9381422	0.714286
testis_male_adult_37_years	chr2	131558150	131558172	131558171	+	RAMPAGE_only	3	3	7	0.312871	2.584963	chr2	131558159	131558366	LTR|ERV1|MER4-int	+	chr2	131543521	131591430	STRG.36693.3	+	131543521,131545045,131555071,131564860,131577507,131580151,131582017,131588664	131543823,131553166,131557463,131575207,131577618,131580264,131582129,131591430	0.714286
testis_male_adult_37_years	chr8	57212194	57212259	57212249	+	RAMPAGE_only	7	7	46	2.056011	5.252856	chr8	57211576	57212321	LTR|ERV1|MER50	-	chr8	57193593	57219442	STRG.147096.2	+	57193593,57193884,57194300,57210733,57212387,57212877,57217777,57218269	57193689,57194011,57206354,57212315,57212583,57214272,57217976,57219442	0.760870
testis_male_adult_37_years	chr11	124674184	124674250	124674197	+	High_confidence	8	8	50	2.234795	5.403856	chr11	124674230	124674340	SINE|Alu|AluJo	+	chr11	124673843	124697518	SPA17|ENST00000532692.1	+	124673843,124681388,124691695,124694302	124675418,124681459,124691782,124697518	0.980000
testis_male_adult_37_years	chr19	50793259	50793276	50793259	+	High_confidence	4	5	10	0.446959	2.947703	chr19	50793227	50793539	SINE|Alu|AluSx	+	chr19	50793277	50794956	STRG.271357.1	+	50793277,50793887,50794456,50794785	50793328,50793970,50794581,50794956	0.800000
testis_male_adult_37_years	chr13	51191896	51191903	51191896	-	RAMPAGE_only	2	2	7	0.312871	2.521641	chr13	51191785	51192194	LTR|ERV1|MER57B1	-	chr13	51188960	51200263	STRG.214609.3	-	51188960,51200046	51191914,51200263	1.000000
testis_male_adult_37_years	chr14	94056256	94056259	94056258	-	RAMPAGE_only	17	22	30	1.340877	4.521641	chr14	94056181	94056927	LTR|ERVL|MER21B	+	chr14	94050919	94081198	DDX24|ENST00000555762.1	-	94050919,94052997,94054995,94060097,94060912,94062096,94079024,94081118	94051462,94053127,94057897,94060613,94061066,94062621,94079747,94081198	0.933333
testis_male_adult_37_years	chr8	2727243	2727272	2727243	+	High_confidence	2	2	8	0.357567	2.750000	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.875000
testis_male_adult_37_years	chr2	85333793	85333794	85333793	-	High_confidence	24	24	25	1.117397	4.303509	chr2	85333376	85334915	LTR|ERV1|LTR12C	-	chr2	85333217	85333806	STRG.32644.1	-	85333217	85333806	0.920000
testis_male_adult_37_years	chr11	30201531	30201551	30201549	-	High_confidence	8	13	24	1.072701	3.795089	chr11	30201280	30201796	LTR|ERVL|MLT2B2	+	chr11	30199432	30202303	STRG.185734.1	-	30199432	30202303	0.916667
testis_male_adult_37_years	chr11	110300558	110300559	110300558	-	High_confidence	19	19	19	0.849222	3.321104	chr11	110300142	110301469	LTR|ERV1|LTR12C	-	chr11	110300203	110300545	STRG.193896.1	-	110300203	110300545	0.894737
testis_male_adult_37_years	chr11	106251415	106251439	106251435	+	High_confidence	6	6	21	0.938614	4.201841	chr11	106250761	106251517	LTR|ERV1|LTR17	+	chr11	106251553	106252095	STRG.193471.1	+	106251553	106252095	0.523810
testis_male_adult_37_years	chr1	92847195	92847224	92847195	-	RAMPAGE_only	4	5	12	0.536351	3.095795	chr1	92847043	92847171	LINE|L1|L1ME4c	-	chr1	92842159	92877150	FAM69A|ENST00000613047.4	-	92842159,92847182,92850847,92876295,92876960	92844195,92847359,92850955,92876430,92877150	0.916667
testis_male_adult_37_years	chr2	83518182	83518232	83518182	-	High_confidence	4	4	15	0.670438	3.456565	chr2	83518015	83518425	LTR|ERV1|LTR12E	+	chr2	83516547	83518426	STRG.32471.1	-	83516547	83518426	0.666667
testis_male_adult_37_years	chr7	38050466	38050481	38050474	+	High_confidence	4	4	15	0.670438	3.378783	chr7	38049603	38050815	LTR|ERV1|LTR12C	+	chr7	38050050	38050899	STRG.129805.1	+	38050050	38050899	0.666667
testis_male_adult_37_years	chr2	169657809	169657826	169657825	-	RAMPAGE_only	13	14	33	1.474964	4.413910	chr2	169657742	169657909	LINE|L1|HAL1	+	chr2	169645424	169694421	CCDC173|NM_001085447.1	-	169645424,169649181,169650328,169654074,169662279,169674575,169674866,169681006,169694260	169646182,169649346,169650521,169654214,169662436,169674769,169675040,169681233,169694421	0.909091
testis_male_adult_37_years	chr2	131564932	131564933	131564932	+	RAMPAGE_only	4	4	7	0.312871	2.584963	chr2	131564570	131565201	LINE|L1|L1MA6	-	chr2	131543521	131591430	STRG.36693.3	+	131543521,131545045,131555071,131564860,131577507,131580151,131582017,131588664	131543823,131553166,131557463,131575207,131577618,131580264,131582129,131591430	0.571429
testis_male_adult_37_years	chr12	9569153	9569193	9569153	+	RAMPAGE_only	2	2	16	0.715134	2.999581	chr12	9568603	9569205	LTR|ERV1|HERVE-int	-	chr12	9557313	9576275	AC092821.1|ENST00000520314.2	+	9557313,9558368,9559174,9560109,9560816,9565091,9567489,9570765,9571460,9573002,9573465,9574846	9557580,9558452,9559348,9560191,9564325,9565303,9569202,9570892,9571573,9573093,9573534,9576275	0.875000
testis_male_adult_37_years	chrX	283469	283509	283508	+	High_confidence	7	13	28	1.251485	4.521641	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.821429
testis_male_adult_37_years	chr10	82232864	82232895	82232894	-	High_confidence	4	5	15	0.670438	3.589898	chr10	82232701	82233082	LTR|ERVL|MER74B	-	chr10	82230129	82232919	NRG3-AS1|ENST00000448936.2	-	82230129,82232479,82232739	82230365,82232618,82232919	0.533333
testis_male_adult_37_years	chr21	42022003	42022030	42022029	+	High_confidence	88	90	380	16.984439	5.522742	chr21	42022002	42022069	LTR|ERVL|MER54A	-	chr21	42022022	42024866	ZNF295-AS1|ENST00000455701.1	+	42022022,42024305	42022211,42024866	0.971053
testis_male_adult_37_years	chr15	31226090	31226092	31226090	-	High_confidence	88	128	135	6.033945	5.501207	chr15	31225886	31226473	LTR|ERV1|LTR12F	-	chr15	31225248	31226081	STRG.233155.1	-	31225248	31226081	0.940741
testis_male_adult_37_years	chr22	19950958	19950990	19950958	+	High_confidence	35	37	154	6.883167	6.343998	chr22	19950523	19951077	LTR|ERV1|MER31-int	-	chr22	19950941	19968589	COMT|ENST00000412786.5	+	19950941,19961198,19962526,19963565,19964167,19968535	19951052,19961289,19962815,19963759,19964299,19968589	0.922078
testis_male_adult_37_years	chr13	58318895	58318919	58318918	+	High_confidence	7	8	29	1.296181	4.328600	chr13	58317810	58319099	LTR|ERV1|LTR12C	-	chr13	58318529	58387479	STRG.215587.1	+	58318529,58387163	58319266,58387479	0.758621
testis_male_adult_37_years	chr2	69439566	69439567	69439566	-	High_confidence	75	76	83	3.709759	5.523499	chr2	69439251	69440147	LTR|ERV1|LTR12C	-	chr2	69438924	69439592	STRG.31213.1	-	69438924	69439592	0.939759
testis_male_adult_37_years	chr9	125332610	125332627	125332626	+	RAMPAGE_only	2	3	6	0.268175	2.584963	chr9	125332672	125333080	LINE|L1|L1ME4c	+	chr9	125302306	125342234	GAPVD1|ENST00000436712.2	+	125302306,125305062,125307412,125307690,125309928,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176,125342218	125302826,125305149,125307547,125307880,125310009,125312612,125321499,125323923,125326589,125330218,125332060,125332629,125337095,125337591,125341264,125342234	0.500000
testis_male_adult_37_years	chr16	53413266	53413267	53413266	+	High_confidence	76	76	77	3.441584	5.117028	chr16	53412649	53413585	LTR|ERV1|LTR12D	+	chr16	53413284	53413760	STRG.245529.1	+	53413284	53413760	0.779221
testis_male_adult_37_years	chr2	131688200	131688226	131688225	+	RAMPAGE_only	2	2	6	0.268175	2.584963	chr2	131687764	131688499	LINE|L1|L1MA6	-	chr2	131682430	131767107	STRG.36693.8	+	131682430,131684708,131686063,131686329,131688165,131722416,131731934,131750632,131751508,131766618	131682557,131684819,131686211,131686441,131688303,131731784,131733952,131750830,131751585,131767107	0.666667
testis_male_adult_37_years	chr8	78750265	78750290	78750281	-	High_confidence	17	17	59	2.637058	5.301931	chr8	78750042	78750541	LINE|L1|L1MC1	+	chr8	78732810	78750276	STRG.149223.1	-	78732810,78736473,78738503,78740001,78749523	78733832,78736527,78738635,78740082,78750276	0.932203
testis_male_adult_37_years	chr3	188568990	188569044	188569004	+	High_confidence	189	192	1137	50.819229	6.112069	chr3	188568967	188569135	LINE|L2|L2a	-	chr3	188569030	188760201	LPP|ENST00000471917.1	+	188569030,188609160,188708266,188760112	188569128,188609844,188708393,188760201	0.949868
testis_male_adult_37_years	chr6	89656045	89656046	89656045	-	RAMPAGE_only	12	12	18	0.804526	3.725481	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642774	89670126	STRG.116864.3	-	89642774,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658609,89661430,89662086,89662791,89664486,89668013	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89658370,89658917,89661578,89662239,89662967,89664628,89670126	1.000000
testis_male_adult_37_years	chr1	198355602	198355603	198355602	+	High_confidence	23	23	32	1.430269	4.812500	chr1	198355403	198355762	LTR|ERVL-MaLR|THE1D	+	chr1	198355590	198356686	STRG.17430.1	+	198355590	198356686	0.531250
testis_male_adult_37_years	chr2	190923	190924	190923	-	High_confidence	42	42	47	2.100707	5.141250	chr2	190509	191898	LTR|ERV1|LTR12C	-	chr2	189766	190917	STRG.22788.1	-	189766	190917	0.702128
testis_male_adult_37_years	chr3	129014627	129014662	129014627	+	RAMPAGE_only	11	11	64	2.860537	4.879532	chr3	129014283	129014664	LTR|ERVL-MaLR|MLT1B	-	chr3	129013459	129015910	STRG.61159.1	+	129013459,129015850	129015149,129015910	0.953125
testis_male_adult_37_years	chr4	147718128	147718187	147718171	+	RAMPAGE_only	11	11	61	2.726449	5.289898	chr4	147717960	147718380	LINE|CR1|L3	+	chr4	147732062	148063277	STRG.84244.3	+	147732062,147822726,147822895,147847150,147866711,147875020,147879231,147881837,147906637,147909731,147913073,147939824,147946616,147955315,147965023,147966679,148023262,148046891,148063147	147732455,147822822,147822957,147864956,147866816,147875150,147879338,147881932,147906719,147909777,147913139,147939899,147946704,147955374,147965129,147966839,148023413,148047051,148063277	0.868852
testis_male_adult_37_years	chr9	68742275	68742321	68742275	+	High_confidence	16	16	56	2.502970	5.351823	chr9	68742229	68742315	DNA|TcMar-Tigger|Tigger16a	+	chr9	68742254	69009176	PIP5K1B|ENST00000478500.3	+	68742254,68742500,68818460,68822614,68824095,68863836,68876676,68888980,68894338,68917547,68919478,68919680,68923301,68934889,68940645,68963182,68964027,68965588,68966506,68991139,69008446	68742354,68742657,68818545,68822683,68824215,68863967,68876794,68889133,68894638,68917759,68919562,68919729,68923386,68935045,68940790,68963321,68964127,68965648,68966730,68991257,69009176	0.803571
testis_male_adult_37_years	chr16	60332677	60332681	60332680	+	High_confidence	12	13	19	0.849222	4.037401	chr16	60332328	60332876	LTR|ERV1|LTR12	+	chr16	60332666	60339170	STRG.245950.1	+	60332666,60339074	60332977,60339170	0.736842
testis_male_adult_37_years	chr11	15561818	15561819	15561818	+	High_confidence	50	50	67	2.994625	5.190402	chr11	15560740	15562134	LTR|ERV1|LTR12C	+	chr11	15561759	15604006	STRG.184273.1	+	15561759,15585707,15603931	15562228,15585802,15604006	0.895522
testis_male_adult_37_years	chr17	13940606	13940612	13940611	-	RAMPAGE_only	5	8	13	0.581047	3.546594	chr17	13940368	13940765	LTR|ERVL-MaLR|MLT1J	-	chr17	13776831	13892839	COX10-AS1|ENST00000577798.6	-	13776831,13790268,13865078,13880301,13892724	13777349,13790313,13865266,13880371,13892839	0.615385
testis_male_adult_37_years	chr12	122562671	122562688	122562687	+	RAMPAGE_only	3	3	6	0.268175	2.584963	chr12	122562727	122563021	SINE|Alu|AluSx	+	chr12	122527261	122626400	KNTC1|NM_014708.4	+	122527261,122529990,122534663,122538338,122539675,122542049,122543599,122544158,122546175,122546621,122547414,122547914,122549765,122551318,122551457,122551620,122557383,122557599,122561920,122562637,122568260,122569680,122570875,122571024,122572936,122573141,122574281,122575542,122575799,122576894,122577671,122579904,122580602,122582704,122584277,122584892,122585635,122586700,122587710,122588711,122590606,122591336,122594275,122597730,122601535,122602568,122602828,122603026,122604563,122604876,122605305,122609383,122610821,122613111,122613625,122614990,122615469,122618342,122618481,122620478,122621880,122622461,122624597,122626204	122527351,122530192,122534784,122538454,122539754,122542127,122543634,122544269,122546269,122546674,122547530,122547969,122549864,122551362,122551523,122551696,122557509,122557689,122561974,122562699,122568372,122569824,122570932,122571126,122573056,122573285,122574380,122575646,122575899,122577029,122577791,122579977,122580670,122582985,122584450,122584990,122585774,122586757,122587874,122588816,122590735,122591453,122594385,122597938,122601625,122602740,122602887,122603243,122604637,122605087,122605415,122609430,122610900,122613230,122613761,122615086,122615526,122618397,122618545,122620608,122621970,122622607,122624688,122626400	1.000000
testis_male_adult_37_years	chr22	39874066	39874070	39874066	-	High_confidence	336	367	500	22.347946	5.048627	chr22	39873891	39874245	LTR|ERVL-MaLR|THE1B	-	chr22	39743043	39874221	STRG.286009.2	-	39743043,39765222,39820992,39835839,39836696,39861764,39873974	39744283,39765609,39821113,39835958,39836926,39862007,39874221	0.900000
testis_male_adult_37_years	chr12	16060745	16060760	16060745	+	RAMPAGE_only	5	5	15	0.670438	3.467720	chr12	16060366	16060782	LTR|ERVL-MaLR|MLT1K	-	chr12	16057424	16108009	STRG.199273.2	+	16057424,16107509	16061091,16108009	0.866667
testis_male_adult_37_years	chr4	5203912	5203916	5203915	-	High_confidence	10	10	20	0.893918	4.121928	chr4	5203730	5204159	LTR|ERVL|LTR16A2	+	chr4	5193145	5203110	STRG.69432.1	-	5193145,5200763,5202958	5193318,5201511,5203110	0.750000
testis_male_adult_37_years	chrX	9034017	9034018	9034017	-	High_confidence	4	4	7	0.312871	2.807355	chrX	9033929	9034070	SINE|Alu|AluSq	+	chrX	9024231	9034127	FAM9B|NM_205849.3	-	9024231,9025483,9027867,9029306,9030260,9032129,9032340,9032958,9033851	9025377,9025583,9027966,9029418,9030360,9032161,9032461,9033075,9034127	1.000000
testis_male_adult_37_years	chr2	238554519	238554545	238554519	+	RAMPAGE_only	14	14	81	3.620367	5.582022	chr2	238554483	238554778	LTR|ERVL-MaLR|MLT1A0	-	chr2	238553346	238561833	STRG.46868.1	+	238553346	238561833	0.604938
testis_male_adult_37_years	chr12	10363662	10363664	10363662	+	High_confidence	37	56	74	3.307496	5.547027	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.702703
testis_male_adult_37_years	chr15	93863033	93863076	93863036	+	High_confidence	5	5	32	1.430269	4.390320	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863021	93878931	STRG.240317.1	+	93863021,93865342,93869690,93878033	93863216,93865648,93869833,93878931	0.656250
testis_male_adult_37_years	chrX	107185080	107185085	107185080	-	RAMPAGE_only	2	2	6	0.268175	2.584963	chrX	107185073	107185221	SINE|Alu|AluYc	+	chrX	107123426	107206433	NUP62CL|ENST00000372466.8	-	107123426,107147742,107153171,107153453,107154095,107167648,107175088,107193028,107206272	107124332,107147809,107153306,107153503,107154246,107167784,107175193,107193072,107206433	0.833333
testis_male_adult_37_years	chr8	87971209	87971232	87971209	-	High_confidence	5	8	15	0.670438	3.664498	chr8	87970972	87972345	LTR|ERV1|LTR12C	+	chr8	87960959	87971679	STRG.150650.1	-	87960959,87963338,87964184,87970930	87961157,87963404,87964284,87971679	0.866667
testis_male_adult_37_years	chr15	58796051	58796085	58796073	+	RAMPAGE_only	17	17	50	2.234795	5.095176	chr15	58795859	58796196	LINE|L2|L2	-	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	0.740000
testis_male_adult_37_years	chr17	50518550	50518564	50518550	+	RAMPAGE_only	8	8	14	0.625742	3.521641	chr17	50518431	50518611	LINE|CR1|L3	-	chr17	50508621	50531497	MYCBPAP|ENST00000437498.1	+	50508621,50516569,50517292,50517594,50518540,50518973,50519639,50521109,50521315,50521972,50522938,50523596,50524876,50525880,50527286,50528154,50528694,50529017,50529764,50530212,50531326	50508750,50516697,50517452,50517698,50518724,50519089,50519787,50521225,50521431,50522081,50523128,50523784,50525023,50526267,50527408,50528270,50528840,50529188,50529824,50530312,50531497	1.000000
testis_male_adult_37_years	chr15	97234257	97234292	97234291	+	High_confidence	16	16	50	2.234795	5.253661	chr15	97234023	97234482	LTR|ERV1|LTR12F	+	chr15	97234281	97432873	STRG.240748.1	+	97234281,97236220,97411191,97429769,97431790	97234484,97236319,97411278,97429889,97432873	0.620000
testis_male_adult_37_years	chr21	39414615	39414626	39414615	-	RAMPAGE_only	2	2	7	0.312871	2.584963	chr21	39414503	39414727	LTR|ERVL-MaLR|MLT1G1	+	chr21	39405977	39411147	LCA5L|ENST00000495240.1	-	39405977,39409978,39410263,39411032	39406612,39410096,39410367,39411147	0.571429
testis_male_adult_37_years	chr14	35832435	35832466	35832435	+	High_confidence	6	6	24	1.072701	3.708132	chr14	35832222	35832520	SINE|Alu|AluYf1	+	chr14	35833000	35932325	BRMS1L|ENST00000551774.1	+	35833000,35834843,35862589,35863869,35864934,35865721,35867905,35931722	35833105,35834923,35862686,35863953,35864999,35865761,35868032,35932325	0.916667
testis_male_adult_37_years	chr8	53177567	53177568	53177567	+	High_confidence	25	25	26	1.162093	4.323856	chr8	53177213	53177691	LTR|ERV1|LTR10B	+	chr8	53177570	53216423	AC009646.2|ENST00000529837.1	+	53177570,53216298	53178003,53216423	0.846154
testis_male_adult_37_years	chr5	118282566	118282587	118282573	+	High_confidence	15	15	57	2.547666	5.329589	chr5	118281980	118283545	Retroposon|SVA|SVA_C	+	chr5	118282573	118284777	HNCAT21|NR_104609.1	+	118282573,118283712	118282727,118284777	0.912281
testis_male_adult_37_years	chr6	1496108	1496142	1496141	+	High_confidence	15	15	48	2.145403	5.251629	chr6	1495928	1496435	LTR|ERVL-MaLR|MLT1H1	+	chr6	1496107	1511383	STRG.106516.1	+	1496107,1498328,1508812,1511042	1496223,1498542,1508914,1511383	0.520833
testis_male_adult_37_years	chr11	46220713	46220744	46220731	-	High_confidence	7	7	39	1.743140	3.810317	chr11	46220687	46220786	LINE|L2|L2c	+	chr11	46213827	46220438	AC024475.3|ENST00000635389.1	-	46213827,46215726,46220362	46214224,46215891,46220438	0.897436
testis_male_adult_37_years	chr7	111392866	111392900	111392866	-	RAMPAGE_only	3	3	8	0.357567	3.000000	chr7	111392522	111393282	LTR|ERVL|MER21C	-	chr7	110878780	111415857	STRG.136096.6	-	110878780,110963499,111391837	110886695,110963565,111415857	0.750000
testis_male_adult_37_years	chr15	49877286	49877302	49877301	+	RAMPAGE_only	21	21	39	1.743140	4.521358	chr15	49877200	49877310	DNA|hAT-Charlie|MER5A1	-	chr15	49879603	49883523	AC025040.1|ENST00000560375.5	+	49879603,49880584,49883217	49880472,49880693,49883523	0.974359
testis_male_adult_37_years	chrX	109760801	109760851	109760825	-	RAMPAGE_only	4	4	22	0.983310	3.039354	chrX	109760494	109761733	LINE|L1|L1MCa	+	chrX	109641329	109733403	ACSL4|NM_001318509.1	-	109641329,109659353,109661530,109663210,109665419,109668100,109669033,109674401,109677987,109678264,109680997,109681265,109682718,109683135,109696143,109733138	109644186,109659511,109661645,109663402,109665494,109668273,109669173,109674473,109678111,109678415,109681136,109681375,109682896,109683666,109696196,109733403	0.818182
testis_male_adult_37_years	chr21	40578294	40578316	40578315	-	High_confidence	4	4	10	0.446959	2.921928	chr21	40578280	40578777	LTR|ERV1|LTR12	+	chr21	40577541	40578433	STRG.282021.1	-	40577541	40578433	0.600000
testis_male_adult_37_years	chr12	105272483	105272490	105272483	+	High_confidence	4	4	8	0.357567	2.750000	chr12	105272060	105272551	LTR|ERV1|MER51A	-	chr12	105272475	105275641	STRG.208952.10	+	105272475	105275641	0.875000
testis_male_adult_37_years	chr3	8682026	8682054	8682053	-	High_confidence	22	24	38	1.698444	4.964904	chr3	8681887	8683470	LTR|ERV1|HERVE-int	+	chr3	8619594	8682071	SSUH2|ENST00000317371.8	-	8619594,8623548,8625541,8626228,8627697,8629663,8630804,8632048,8633665,8635299,8635758,8639947,8658924,8663743,8670997,8671893,8677205,8679704,8681890	8620014,8623656,8625647,8626321,8627783,8629726,8630929,8632109,8633941,8635381,8635857,8640069,8659013,8663802,8671153,8672035,8677353,8679849,8682071	0.868421
testis_male_adult_37_years	chr19	49717746	49717749	49717746	+	High_confidence	4	4	11	0.491655	3.277613	chr19	49717515	49717903	LTR|ERVL|LTR50	+	chr19	49717736	49720149	STRG.271206.1	+	49717736,49719456	49718002,49720149	0.727273
testis_male_adult_37_years	chr12	68687414	68687449	68687448	+	High_confidence	14	15	34	1.519660	4.741364	chr12	68687375	68687463	SINE|MIR|MIRc	-	chr12	68687454	68742531	NUP107|ENST00000539906.5	+	68687454,68688961,68689532,68690602,68691967,68696818,68700725,68702735,68709237,68710004,68713729,68715626,68719340,68719577,68721117,68721840,68722103,68725726,68726498,68727350,68731109,68731606,68732636,68733451,68734707,68735230,68741812,68742354	68687591,68689053,68689619,68690746,68692112,68696922,68700853,68702784,68709309,68710093,68713808,68715740,68719431,68719654,68721177,68721986,68722152,68725796,68726617,68727389,68731260,68731719,68732739,68733612,68734833,68735344,68741980,68742531	0.882353
testis_male_adult_37_years	chr13	23107959	23107964	23107959	+	High_confidence	64	66	107	4.782460	4.994823	chr13	23107658	23108181	LTR|ERV1|LTR12F	+	chr13	23107911	23108802	STRG.212263.1	+	23107911	23108802	0.990654
testis_male_adult_37_years	chr2	17720951	17720969	17720959	-	RAMPAGE_only	3	3	12	0.536351	3.277613	chr2	17720840	17720910	DNA|TcMar-Mariner|MADE2	-	chr2	17716749	17746412	SMC6|ENST00000381272.5	-	17716749,17717087,17718076,17720939,17721141,17725256,17726388,17731077,17731740,17738220,17741611,17745826	17716905,17717176,17718223,17721038,17721261,17725358,17726469,17731139,17731877,17738326,17741729,17746412	0.666667
testis_male_adult_37_years	chr7	69941271	69941302	69941299	+	RAMPAGE_only	6	7	24	1.072701	3.754442	chr7	69941220	69941350	SINE|5S-Deu-L2|AmnSINE1	-	chr7	70134555	70437858	AUTS2|ENST00000643060.1	+	70134555,70435751	70134571,70437858	0.500000
testis_male_adult_37_years	chr7	23214050	23214084	23214074	+	High_confidence	10	17	55	2.458274	5.440362	chr7	23213661	23214337	LTR|ERV1|MER50	-	chr7	23214070	23215052	STRG.127947.1	+	23214070	23215052	0.527273
testis_male_adult_37_years	chr8	105387658	105387696	105387658	+	High_confidence	7	7	38	1.698444	4.859641	chr8	105386387	105387853	LTR|ERV1|LTR12C	-	chr8	105387145	105789027	ZFPM2|ENST00000511341.6	+	105387145,105419143,105444279,105561362,105634245,105788717	105387925,105419302,105444381,105561481,105634357,105789027	0.921053
testis_male_adult_37_years	chr3	154888720	154888754	154888720	-	RAMPAGE_only	28	28	60	2.681753	4.685538	chr3	154888320	154889804	LTR|ERV1|LTR12C	-	chr3	154878763	154889842	STRG.63852.3	-	154878763,154887328,154888356,154889084	154881578,154887404,154888583,154889842	0.783333
testis_male_adult_37_years	chr3	43417289	43417321	43417320	-	High_confidence	10	10	39	1.743140	4.721300	chr3	43417045	43417666	LTR|ERV1|LTR9	+	chr3	43366358	43417679	STRG.52989.6	-	43366358,43417231	43366974,43417679	0.948718
testis_male_adult_37_years	chr3	114759249	114759277	114759276	-	High_confidence	12	12	33	1.474964	4.680758	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.515152
testis_male_adult_37_years	chr12	5244169	5244198	5244184	-	RAMPAGE_only	13	13	48	2.145403	4.492543	chr12	5243975	5244424	LINE|L2|L2c	+	chr12	5238047	5243151	LOC101929584|NR_120477.1	-	5238047,5239887,5243067	5238323,5240112,5243151	0.833333
testis_male_adult_37_years	chr12	119504157	119504168	119504167	+	RAMPAGE_only	4	4	11	0.491655	2.921928	chr12	119504158	119504255	SINE|MIR|MIRb	+	chr12	119334711	119541047	CCDC60|NM_178499.4	+	119334711,119428682,119471993,119479093,119488758,119500077,119505068,119516622,119520120,119522938,119523692,119528614,119530873,119540613	119335266,119428762,119472164,119479201,119488866,119500168,119505303,119516707,119520192,119523001,119523818,119528746,119531063,119541047	0.818182
testis_male_adult_37_years	chr4	188818417	188818474	188818444	-	High_confidence	2	2	15	0.670438	3.521641	chr4	188818261	188818656	LINE|L1|HAL1	+	chr4	188786653	188818466	STRG.87908.2	-	188786653,188817643,188818325	188791291,188817774,188818466	0.666667
testis_male_adult_37_years	chr17	40775287	40775316	40775315	-	High_confidence	2	2	7	0.312871	2.584963	chr17	40775126	40775420	SINE|Alu|AluY	+	chr17	40774424	40775218	STRG.253600.1	-	40774424	40775218	0.714286
testis_male_adult_37_years	chr12	75234754	75234788	75234760	+	High_confidence	3	3	11	0.491655	2.921928	chr12	75234335	75235407	LINE|CR1|L3	+	chr12	75234739	75251865	AC091534.1|ENST00000548779.1	+	75234739,75250492	75235117,75251865	0.909091
testis_male_adult_37_years	chr18	21131978	21131981	21131980	-	High_confidence	315	399	489	21.856291	3.961237	chr18	21131574	21133018	LTR|ERV1|LTR12C	-	chr18	21128208	21131992	STRG.259979.1	-	21128208	21131992	0.991820
testis_male_adult_37_years	chr7	139230255	139230282	139230281	-	RAMPAGE_only	4	4	11	0.491655	2.663533	chr7	139230177	139230264	SINE|MIR|MIR3	-	chr7	139227416	139231501	STRG.139259.1	-	139227416,139231346	139227872,139231501	0.545455
testis_male_adult_37_years	chr15	62229086	62229141	62229121	+	RAMPAGE_only	5	5	18	0.804526	3.969816	chr15	62228862	62229278	LTR|ERVL-MaLR|MSTB	-	chr15	62222940	62278365	STRG.236614.3	+	62222940,62246352,62268994	62246055,62268335,62278365	0.944444
testis_male_adult_37_years	chr16	68527836	68527837	68527836	+	High_confidence	204	207	229	10.235359	5.699512	chr16	68526564	68528236	LTR|ERV1|LTR12C	+	chr16	68527846	68558105	STRG.247153.13	+	68527846,68533697,68539757,68557997	68530334,68539429,68539825,68558105	0.978166
testis_male_adult_37_years	chr18	73264469	73264502	73264473	-	High_confidence	10	10	75	3.352192	5.703389	chr18	73264307	73264608	SINE|Alu|AluY	+	chr18	73250292	73264474	AC079062.1|ENST00000582571.2	-	73250292,73255812,73264239	73250695,73255918,73264474	0.733333
testis_male_adult_37_years	chr3	181182621	181182624	181182623	-	High_confidence	48	76	82	3.665063	4.757842	chr3	181182209	181183542	LTR|ERV1|LTR12C	-	chr3	181182210	181182678	STRG.67185.1	-	181182210	181182678	0.914634
testis_male_adult_37_years	chr3	179681516	179681533	179681516	+	RAMPAGE_only	2	3	8	0.357567	2.521641	chr3	179681222	179681750	LTR|ERV1|LTR6A	-	chr3	179653692	179784406	USP13|ENST00000496897.5	+	179653692,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653750,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179784406	0.750000
testis_male_adult_37_years	chr3	44439884	44439897	44439884	-	RAMPAGE_only	2	2	9	0.402263	3.000000	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431061	44477649	STRG.53048.1	-	44431061,44432168,44449512,44450446,44450867,44451313,44455120,44458243,44477590	44431316,44448739,44449623,44450573,44450962,44451482,44455696,44458364,44477649	0.555556
testis_male_adult_37_years	chr12	27689742	27689761	27689760	+	RAMPAGE_only	6	6	10	0.446959	3.169925	chr12	27689506	27690110	LTR|ERV1|LTR60B	-	chr12	27682623	27693127	PPFIBP1|ENST00000539326.1	+	27682623,27688297,27689014,27691748,27692590,27692795	27682703,27688423,27689203,27691928,27692656,27693127	0.900000
testis_male_adult_37_years	chrX	51511015	51511042	51511041	-	High_confidence	5	5	13	0.581047	3.022055	chrX	51510925	51511222	SINE|Alu|AluSq2	+	chrX	51497693	51511174	STRG.291571.2	-	51497693,51505880,51510947	51505793,51505969,51511174	0.846154
testis_male_adult_37_years	chr2	15220023	15220048	15220031	-	RAMPAGE_only	6	8	27	1.206789	3.594483	chr2	15219321	15220292	Retroposon|SVA|SVA_E	-	chr2	15166913	15238686	NBAS|ENST00000417461.5	-	15166913,15178987,15186741,15190263,15232421,15234544,15238467	15167323,15179116,15186880,15190403,15232511,15234747,15238686	0.740741
testis_male_adult_37_years	chr14	89956460	89956474	89956460	-	RAMPAGE_only	3	3	6	0.268175	2.584963	chr14	89956313	89956481	SINE|MIR|MIR	+	chr14	89923276	89954777	EFCAB11|NM_001284266.1	-	89923276,89931540,89932525,89950096,89953905,89954585	89924677,89931631,89932627,89950142,89954001,89954777	0.666667
testis_male_adult_37_years	chr11	66480686	66480738	66480713	+	High_confidence	6	6	27	1.206789	3.531941	chr11	66480761	66480844	SINE|MIR|MIRc	+	chr11	66480740	66482470	DPP3|ENST00000531314.1	+	66480740,66482192	66481025,66482470	0.888889
testis_male_adult_37_years	chr18	31446557	31446572	31446557	+	High_confidence	6	6	15	0.670438	3.640224	chr18	31446330	31446646	SINE|Alu|AluYf1	+	chr18	31446574	31457080	STRG.260592.1	+	31446574,31447618,31456992	31446610,31447925,31457080	0.666667
testis_male_adult_37_years	chr17	1506283	1506304	1506303	-	RAMPAGE_only	3	3	8	0.357567	2.750000	chr17	1506019	1506324	SINE|Alu|AluSz	-	chr17	1496488	1498201	INPP5K|ENST00000461552.1	-	1496488,1497935	1496803,1498201	0.500000
testis_male_adult_37_years	chr12	99079950	99079988	99079987	-	High_confidence	21	24	97	4.335501	5.976243	chr12	99079722	99080237	LTR|ERV1|LTR45C	+	chr12	98745399	99079964	STRG.208370.6	-	98745399,98751354,98773041,98781116,98782125,98798933,98800996,98829173,98832028,99053156,99079744	98745849,98751522,98773179,98781203,98782137,98799005,98801125,98829353,98832136,99053309,99079964	0.721649
testis_male_adult_37_years	chr19	56833620	56833700	56833630	-	High_confidence	4	4	28	1.251485	4.392747	chr19	56833578	56833676	DNA|hAT-Charlie|MER5A	-	chr19	56814387	56833747	PEG3|ENST00000647852.1	-	56814387,56817745,56818599,56821650,56822752,56823589,56824261,56826387,56827133,56833289,56833642	56817579,56817838,56818702,56821754,56822836,56823679,56824427,56826463,56827246,56833420,56833747	0.750000
testis_male_adult_37_years	chr7	18851443	18851458	18851443	+	High_confidence	1	1	7	0.312871	2.584963	chr7	18851203	18851570	LTR|ERVL-MaLR|THE1D	+	chr7	18851399	18996343	HDAC9|ENST00000496026.1	+	18851399,18874477,18935808,18954145,18975805,18996022	18851452,18874596,18935942,18954230,18975953,18996343	0.571429
testis_male_adult_37_years	chr11	77175226	77175227	77175226	+	High_confidence	14	15	15	0.670438	2.706891	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
testis_male_adult_37_years	chr1	24799304	24799345	24799308	+	RAMPAGE_only	3	3	14	0.625742	3.664498	chr1	24798626	24800040	Retroposon|SVA|SVA_F	+	chr1	24745381	24844267	CLIC4|ENST00000488683.1	+	24745381,24797741,24814093,24827009,24839859,24840772,24844128	24745625,24797851,24814219,24827116,24840041,24842587,24844267	0.642857
testis_male_adult_37_years	chrX	31863230	31863259	31863245	-	High_confidence	16	17	47	2.100707	5.070442	chrX	31863061	31863362	SINE|Alu|AluYh3	+	chrX	31862547	31863504	STRG.290591.1	-	31862547	31863504	0.659574
testis_male_adult_37_years	chr15	93900692	93900727	93900726	+	High_confidence	11	11	46	2.056011	4.205767	chr15	93899800	93901385	LTR|ERV1|MER52A	-	chr15	93900700	93973822	LINC01580|ENST00000555364.5	+	93900700,93906171,93969593,93973459	93900778,93906289,93969695,93973822	0.717391
testis_male_adult_37_years	chrY	19046006	19046007	19046006	-	RAMPAGE_only	6	6	7	0.312871	2.584963	chrY	19045656	19047135	LTR|ERV1|LTR12C	-	chrY	19027534	19050934	STRG.299039.6	-	19027534	19050934	0.857143
testis_male_adult_37_years	chr5	56296435	56296436	56296435	+	High_confidence	81	81	87	3.888543	5.539087	chr5	56295169	56296749	LTR|ERV1|LTR12C	+	chr5	56296207	56297116	STRG.93514.1	+	56296207	56297116	0.655172
testis_male_adult_37_years	chr14	92733111	92733148	92733121	-	High_confidence	15	15	63	2.815841	5.443129	chr14	92732868	92733169	SINE|Alu|AluSg	+	chr14	92704275	92733147	STRG.230646.3	-	92704275,92704639,92706482,92709671,92711658,92711836,92712804,92713822,92714375,92716135,92717379,92718746,92732648,92733023	92704361,92704707,92706653,92709872,92711748,92711955,92712871,92713885,92714451,92716221,92717461,92718844,92732815,92733147	0.904762
testis_male_adult_37_years	chr3	27821518	27821540	27821528	+	High_confidence	3	4	18	0.804526	3.969816	chr3	27815983	27821983	LINE|L1|L1PA7	-	chr3	27821597	27860192	LINC01980|ENST00000455984.1	+	27821597,27824649,27860086	27821724,27824748,27860192	0.500000
testis_male_adult_37_years	chr19	15608040	15608041	15608040	-	High_confidence	395	399	404	18.057140	5.190676	chr19	15607625	15609207	LTR|ERV1|LTR12C	-	chr19	15596156	15608095	STRG.267135.1	-	15596156,15607568	15596956,15608095	0.975248
testis_male_adult_37_years	chr7	64989995	64990033	64989995	-	RAMPAGE_only	9	9	24	1.072701	4.262692	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.958333
testis_male_adult_37_years	chr6	104446573	104446590	104446577	-	High_confidence	6	6	23	1.028006	3.879664	chr6	104446155	104447635	LTR|ERV1|LTR12C	+	chr6	104428483	104446781	STRG.118034.1	-	104428483,104429472,104446051	104428775,104429532,104446781	0.913043
testis_male_adult_37_years	chr6	2877281	2877290	2877289	-	High_confidence	3	3	8	0.357567	2.521641	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2849260	2877377	STRG.106919.1	-	2849260,2854350,2877159	2849322,2855690,2877377	0.750000
testis_male_adult_37_years	chr19	3743790	3743838	3743793	+	High_confidence	20	21	101	4.514285	5.605371	chr19	3743650	3743892	LTR|ERVL-MaLR|MLT1J	-	chr19	3743805	3750807	STRG.265005.2	+	3743805,3746010,3746484,3746775,3747793,3750137,3750581	3744034,3746081,3746695,3746876,3748081,3750184,3750807	0.930693
testis_male_adult_37_years	chr9	15365131	15365183	15365134	-	High_confidence	36	36	92	4.112022	4.145688	chr9	15364601	15365548	LTR|ERV1|LTR12D	-	chr9	15364716	15365122	STRG.157921.1	-	15364716	15365122	0.978261
testis_male_adult_37_years	chr1	119082560	119082568	119082560	-	High_confidence	3	3	8	0.357567	3.000000	chr1	119082453	119082600	SINE|MIR|MIRb	-	chr1	119034128	119082541	WARS2|ENST00000497402.1	-	119034128,119042263,119045581,119076349,119082339	119034213,119042349,119045662,119076607,119082541	0.625000
testis_male_adult_37_years	chr13	24506413	24506414	24506413	-	RAMPAGE_only	938	942	991	44.293629	5.948245	chr13	24506039	24507335	LTR|ERV1|LTR12C	-	chr13	24491614	24507939	STRG.212387.3	-	24491614,24493595,24498115,24499300,24503644,24506032	24492594,24494722,24498229,24501834,24503777,24507939	0.949546
testis_male_adult_37_years	chr11	105961069	105961081	105961069	-	High_confidence	24	24	63	2.815841	5.260976	chr11	105958719	105961070	LINE|L1|L1PA10	-	chr11	105941651	105961068	STRG.193403.2	-	105941651,105960846	105942616,105961068	0.809524
testis_male_adult_37_years	chr18	54883125	54883149	54883148	+	RAMPAGE_only	17	17	35	1.564356	4.020855	chr18	54882317	54883426	LINE|L2|L2c	-	chr18	54884356	54893301	RAB27B|ENST00000592334.1	+	54884356,54887994,54892991,54893147	54884436,54888118,54893056,54893301	0.514286
testis_male_adult_37_years	chr5	9903832	9903861	9903853	-	High_confidence	5	8	26	1.162093	4.315824	chr5	9903618	9903820	LINE|L1|L1PBa	-	chr5	9641314	9903826	LINC02112|ENST00000511616.5	-	9641314,9641871,9659420,9659900,9712171,9713065,9713784,9714079,9765470,9883332,9883922,9902651,9903524	9641505,9641941,9659581,9659981,9712391,9713218,9713851,9714239,9765693,9883367,9884004,9902753,9903826	0.576923
testis_male_adult_37_years	chr3	9363399	9363435	9363434	+	High_confidence	4	4	13	0.581047	3.238901	chr3	9363443	9363535	LINE|L2|L2b	+	chr3	9363097	9384870	THUMPD3|ENST00000515662.6	+	9363097,9365015,9366907,9371059,9374515,9377818,9380502,9383198,9384211,9384523	9363728,9365320,9366985,9371536,9374646,9377888,9380618,9383309,9384335,9384870	1.000000
testis_male_adult_37_years	chr8	24941965	24941985	24941965	-	RAMPAGE_only	2	2	8	0.357567	2.521641	chr8	24941825	24941975	DNA|hAT-Charlie|MER5A1	-	chr8	24920721	24924707	STRG.144315.1	-	24920721,24924589	24920935,24924707	0.500000
testis_male_adult_37_years	chr2	208255748	208255770	208255769	-	High_confidence	3	3	12	0.536351	2.913977	chr2	208255694	208256010	SINE|Alu|AluJb	-	chr2	208248561	208255798	IDH1|ENST00000417583.5	-	208248561,208251429,208253885,208254938,208255528	208248660,208251567,208253959,208255059,208255798	0.666667
testis_male_adult_37_years	chr13	83996152	83996193	83996174	+	High_confidence	5	7	28	1.251485	4.132944	chr13	83996061	83996382	LTR|ERV1|MER61A	+	chr13	83995982	83997579	STRG.218189.1	+	83995982,83996567	83996414,83997579	0.785714
testis_male_adult_37_years	chr9	97047200	97047249	97047233	-	RAMPAGE_only	7	13	33	1.474964	4.233640	chr9	97047207	97047493	SINE|Alu|AluSx1	-	chr9	97029676	97039643	CTSV|NM_001201575.1	-	97029676,97034725,97035527,97036522,97037251,97037492,97037917,97039606	97033048,97034843,97035693,97036747,97037398,97037615,97038053,97039643	0.939394
testis_male_adult_37_years	chr15	51936175	51936208	51936202	-	High_confidence	65	65	254	11.352756	4.132348	chr15	51935784	51936413	LTR|ERVL|LTR50	-	chr15	51929040	51936182	STRG.235608.1	-	51929040,51930528,51936033	51929478,51930623,51936182	0.712598
testis_male_adult_37_years	chr5	177689303	177689304	177689303	+	High_confidence	486	492	544	24.314565	4.559953	chr5	177688053	177689723	LTR|ERV1|LTR12C	+	chr5	177689311	177732453	STRG.106022.2	+	177689311,177706705,177716453,177717552,177724337	177689740,177706885,177716602,177717684,177732453	0.972426
testis_male_adult_37_years	chr3	197300580	197300591	197300590	+	RAMPAGE_only	3	3	8	0.357567	2.521641	chr3	197300406	197300841	LTR|ERVL-MaLR|MLT1F	-	chr3	197298251	197303747	DLG1-AS1|ENST00000430666.1	+	197298251,197298977,197302527	197298610,197299092,197303747	0.875000
testis_male_adult_37_years	chrX	120575767	120575789	120575767	-	High_confidence	7	7	20	0.893918	3.681881	chrX	120575157	120575784	LTR|Gypsy|LTR104_Mam	-	chrX	120526640	120575794	CUL4B|ENST00000404115.7	-	120526640,120530101,120532421,120534480,120535829,120536926,120538123,120538659,120539267,120540369,120541601,120542965,120543726,120544113,120544480,120545443,120546546,120547135,120557923,120560082,120574550,120575405	120526856,120530254,120532594,120534586,120535943,120537034,120538209,120538770,120539372,120540562,120541720,120543033,120543809,120544203,120544643,120545517,120546616,120547239,120558039,120560625,120574630,120575794	0.950000
testis_male_adult_37_years	chr8	80086395	80086412	80086411	-	RAMPAGE_only	6	7	10	0.446959	2.725481	chr8	80086101	80086416	SINE|Alu|AluSc	-	chr8	80034867	80080831	TPD52|NM_001025252.2	-	80034867,80042619,80051526,80053281,80064477,80080314	80038235,80042668,80051628,80053430,80064593,80080831	0.900000
testis_male_adult_37_years	chr4	162203571	162203602	162203601	-	High_confidence	5	7	19	0.849222	3.725481	chr4	162203406	162203891	LTR|ERV1|LTR12C	+	chr4	162163737	162203691	STRG.85315.1	-	162163737,162203387	162164589,162203691	0.842105
testis_male_adult_37_years	chr12	10215138	10215161	10215138	+	RAMPAGE_only	12	12	20	0.893918	3.932138	chr12	10215098	10215229	SINE|MIR|MIR3	+	chr12	10213439	10223110	GABARAPL1|ENST00000539170.5	+	10213439,10218062,10220439,10221786	10213617,10218141,10220558,10223110	0.550000
testis_male_adult_37_years	chr2	69794150	69794182	69794164	-	RAMPAGE_only	6	6	28	1.251485	4.056021	chr2	69793262	69794493	LTR|ERV1|LTR25-int	-	chr2	69789521	69799012	STRG.31227.4	-	69789521,69794547	69794522,69799012	0.928571
testis_male_adult_37_years	chr1	51583574	51583610	51583574	-	High_confidence	2	4	13	0.581047	3.392747	chr1	51583300	51583534	SINE|MIR|MIRb	-	chr1	51565529	51583727	CALR4P|ENST00000641477.1	-	51565529,51567173,51567751,51569547,51573953,51582823,51583449	51566541,51567332,51567843,51569750,51574055,51582920,51583727	0.923077
testis_male_adult_37_years	chr11	123060124	123060229	123060168	-	High_confidence	94	99	420	18.772274	5.410157	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	0.988095
testis_male_adult_37_years	chr18	54945412	54945441	54945425	-	RAMPAGE_only	2	2	9	0.402263	2.750000	chr18	54945305	54945474	SINE|MIR|MIRc	-	chr18	54901510	54942950	CCDC68|ENST00000432185.5	-	54901510,54907785,54917912,54919270,54928799,54934819,54936832,54937956,54940996,54942674	54904415,54907862,54917996,54919376,54928882,54934948,54936958,54938097,54941083,54942950	0.777778
testis_male_adult_37_years	chr7	76977121	76977130	76977121	+	RAMPAGE_only	3	3	9	0.402263	2.503258	chr7	76977076	76977162	LINE|L2|L2b	-	chr7	76978616	77004308	DTX2P1|ENST00000425797.2	+	76978616,76980620,76990268,76995454,77000308,77002162,77003288,77004217	76978876,76981260,76990369,76995595,77000388,77002321,77003449,77004308	1.000000
testis_male_adult_37_years	chr7	18152555	18152577	18152555	+	High_confidence	2	2	9	0.402263	2.947703	chr7	18152465	18152588	DNA|hAT-Charlie|MER5A	-	chr7	18151774	18327612	HDAC9|ENST00000425071.5	+	18151774,18162228,18325511,18327448	18151879,18162349,18325592,18327612	0.888889
testis_male_adult_37_years	chr7	20191554	20191600	20191599	+	High_confidence	4	4	14	0.625742	3.546594	chr7	20191526	20191795	LTR|ERVL|LTR33A	-	chr7	20191096	20193082	STRG.127470.1	+	20191096,20191719	20191115,20193082	0.857143
testis_male_adult_37_years	chr1	209858125	209858136	209858125	-	High_confidence	25	25	50	2.234795	4.994035	chr1	209857856	209859201	LTR|ERV1|LTR12C	-	chr1	209852733	209858125	STRG.18618.1	-	209852733	209858125	0.940000
testis_male_adult_37_years	chr4	154355688	154355724	154355721	-	RAMPAGE_only	5	5	18	0.804526	3.852169	chr4	154355671	154356858	DNA|TcMar-Tigger|Tigger3b	+	chr4	154231818	154352493	STRG.84576.1	-	154231818,154239169,154240536,154242641,154255518,154259544,154269899,154297850,154304668,154305096,154315747,154320378,154322330,154328092,154329522,154332477,154334867,154352449	154237159,154239302,154240823,154242772,154255670,154259756,154270013,154298708,154304878,154305231,154315987,154321222,154322488,154328192,154329710,154333494,154335104,154352493	0.500000
testis_male_adult_37_years	chr6	26006349	26006355	26006349	-	RAMPAGE_only	2	2	7	0.312871	2.584963	chr6	26006117	26006392	LTR|ERVL|LTR33	-	chr6	25983811	25999167	U91328.2|ENST00000608931.1	-	25983811,25999086	25984084,25999167	0.571429
testis_male_adult_37_years	chr11	21753465	21753491	21753486	+	High_confidence	14	14	35	1.564356	4.620152	chr11	21752440	21753682	LTR|ERV1|LTR12C	-	chr11	21752973	21757815	STRG.184891.1	+	21752973	21757815	0.628571
testis_male_adult_37_years	chr17	58487172	58487195	58487172	-	RAMPAGE_only	2	2	8	0.357567	2.807355	chr17	58486895	58487205	SINE|Alu|AluSg	-	chr17	58420166	58488384	HSF5|ENST00000323777.7	-	58420166,58458767,58462781,58466884,58479892,58487724	58422430,58458945,58463303,58466979,58480267,58488384	0.750000
testis_male_adult_37_years	chr20	54217038	54217039	54217038	+	RAMPAGE_only	8	8	8	0.357567	2.500000	chr20	54217001	54217339	LINE|L2|L2b	-	chr20	54208311	54219203	PFDN4|ENST00000487129.1	+	54208311,54208834,54214350,54215299,54219018	54208558,54208915,54214458,54215440,54219203	0.500000
testis_male_adult_37_years	chr3	71289758	71289772	71289763	+	High_confidence	25	25	63	2.815841	5.329117	chr3	71289640	71289917	SINE|Alu|AluJo	-	chr3	71289768	71305853	FOXP1-AS1|ENST00000465742.2	+	71289768,71292516,71296449,71302727,71305671	71289971,71292640,71296507,71302860,71305853	0.904762
testis_male_adult_37_years	chr5	83102811	83102822	83102817	+	RAMPAGE_only	4	5	13	0.581047	3.418296	chr5	83102848	83103023	SINE|MIR|MIR	+	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	0.769231
testis_male_adult_37_years	chr3	71289720	71289721	71289720	+	High_confidence	6	6	6	0.268175	2.584963	chr3	71289640	71289917	SINE|Alu|AluJo	-	chr3	71289757	71305854	FOXP1-AS1|NR_126463.1	+	71289757,71292516,71296449,71302727,71305671	71289971,71292640,71296507,71302860,71305854	1.000000
testis_male_adult_37_years	chr15	23962740	23962741	23962740	+	High_confidence	56	57	72	3.218104	4.871537	chr15	23962441	23962990	LTR|ERV1|LTR12F	+	chr15	23962709	23988580	STRG.232734.5	+	23962709,23973536,23976146,23979070	23970637,23975255,23977491,23988580	0.972222
testis_male_adult_37_years	chr1	193073612	193073627	193073616	+	RAMPAGE_only	17	18	78	3.486280	5.430645	chr1	193073592	193073745	SINE|Alu|AluSx	-	chr1	193069231	193084866	STRG.16977.9	+	193069231,193075819,193076500,193081363,193082185,193082561,193084578	193069634,193076040,193077050,193081480,193082299,193082708,193084866	0.987179
testis_male_adult_37_years	chr12	3899016	3899051	3899050	+	High_confidence	32	56	95	4.246110	5.230084	chr12	3898655	3899132	LINE|CR1|L3	+	chr12	3899052	3910306	AC005842.1|ENST00000545357.1	+	3899052,3909883	3899187,3910306	0.905263
testis_male_adult_37_years	chr4	106238695	106238696	106238695	-	High_confidence	12	12	12	0.536351	3.022055	chr4	106238640	106239192	LINE|L1|L1MCa	+	chr4	106232997	106238740	TBCK|ENST00000503516.1	-	106232997,106233587,106235268,106236389,106236758,106237490,106238596	106233064,106233650,106235367,106236519,106236808,106237538,106238740	1.000000
testis_male_adult_37_years	chr2	63183604	63183639	63183604	+	High_confidence	3	3	12	0.536351	3.277613	chr2	63180199	63186886	LINE|L1|L1PB4	-	chr2	63183652	63202041	STRG.30798.1	+	63183652,63196121,63201195	63183716,63197230,63202041	0.916667
testis_male_adult_37_years	chr21	33170639	33170684	33170645	-	High_confidence	9	9	59	2.637058	5.439625	chr21	33170423	33170674	LINE|L2|L2b	+	chr21	33165469	33170649	LINC01548|ENST00000451980.3	-	33165469,33168442,33169695,33170140,33170563	33165691,33168581,33169833,33170251,33170649	0.898305
testis_male_adult_37_years	chr10	114179912	114179918	114179912	+	High_confidence	3	5	9	0.402263	3.000000	chr10	114179944	114180107	SINE|MIR|MIR1_Amn	+	chr10	114179589	114228417	TDRD1|ENST00000369280.1	+	114179589,114187825,114190960,114199172,114201409,114202237,114203071,114203387,114204072,114204721,114206243,114210580,114210859,114211865,114213345,114213976,114217544,114218413,114220567,114221356,114222586,114226048,114227909,114228037	114180043,114188156,114191019,114199317,114201515,114202298,114203176,114203567,114204216,114204893,114206330,114210748,114210967,114212036,114213588,114214114,114217655,114218584,114220843,114221476,114222703,114226216,114227956,114228417	0.888889
testis_male_adult_37_years	chr2	12926816	12926861	12926816	-	High_confidence	6	6	35	1.564356	3.530025	chr2	12926604	12927072	LTR|ERV1|LTR12C	-	chr2	12914418	12927048	STRG.24213.1	-	12914418,12915826,12926600	12914852,12915927,12927048	0.742857
testis_male_adult_37_years	chr5	108763447	108763475	108763474	+	RAMPAGE_only	12	19	33	1.474964	4.476064	chr5	108763191	108763781	LTR|ERVL|LTR40A1	-	chr5	108748966	108843001	FER|ENST00000502752.1	+	108748966,108768092,108782662,108798123,108832769,108835707,108841830,108842261	108748993,108768238,108782755,108798389,108832943,108835807,108841868,108843001	0.848485
testis_male_adult_37_years	chr1	43873249	43873250	43873249	+	High_confidence	6	7	9	0.402263	3.169925	chr1	43872619	43873502	LINE|L2|L2a	-	chr1	43872801	43875914	STRG.4419.1	+	43872801	43875914	0.888889
testis_male_adult_37_years	chr16	67181659	67181695	67181659	-	RAMPAGE_only	3	3	9	0.402263	2.725481	chr16	67181600	67181913	LINE|L2|L2a	+	chr16	67176729	67183941	KIAA0895L|ENST00000563902.1	-	67176729,67178009,67178198,67179429,67179814,67180040,67183261	67176975,67178107,67178504,67179562,67179958,67180666,67183941	0.777778
testis_male_adult_37_years	chr12	126449335	126449336	126449335	-	High_confidence	8	8	12	0.536351	3.251629	chr12	126449276	126450067	LTR|ERV1|LTR17	-	chr12	126445206	126449287	STRG.210305.1	-	126445206,126449065,126449238	126445570,126449161,126449287	0.583333
testis_male_adult_37_years	chr1	155343321	155343410	155343321	-	RAMPAGE_only	24	24	61	2.726449	4.846721	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.885246
testis_male_adult_37_years	chr3	33864058	33864100	33864058	+	RAMPAGE_only	4	5	25	1.117397	4.053661	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.960000
testis_male_adult_37_years	chr10	103100692	103100718	103100692	-	RAMPAGE_only	4	4	12	0.536351	3.584963	chr10	103100657	103100952	SINE|tRNA|LFSINE_Vert	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.916667
testis_male_adult_37_years	chr7	69394113	69394131	69394113	-	High_confidence	4	4	12	0.536351	3.095795	chr7	69393647	69395028	LTR|ERV1|LTR12C	+	chr7	69387765	69394445	STRG.131880.1	-	69387765,69393639	69388333,69394445	0.833333
testis_male_adult_37_years	chr11	108330416	108330417	108330416	+	RAMPAGE_only	5	5	7	0.312871	2.807355	chr11	108330466	108330549	LINE|L2|L2c	+	chr11	108332761	108336408	ATM|ENST00000533979.5	+	108332761,108333885,108334968,108335844,108336183	108332900,108333968,108335109,108335961,108336408	0.714286
testis_male_adult_37_years	chr7	154057631	154057648	154057647	-	RAMPAGE_only	5	5	13	0.581047	3.584963	chr7	154057429	154058031	LTR|ERV1|HERVE-int	+	chr7	154055584	154059561	AC006019.1|ENST00000425591.1	-	154055584,154057432	154055925,154059561	0.846154
testis_male_adult_37_years	chr4	174511700	174511715	174511714	-	RAMPAGE_only	4	4	9	0.402263	3.000000	chr4	174511635	174511945	SINE|Alu|AluY	-	chr4	174493158	174522333	HPGD|ENST00000514584.5	-	174493158,174495547,174508695,174517970,174521943	174493314,174495624,174508792,174518077,174522333	0.777778
testis_male_adult_37_years	chr19	31588199	31588231	31588230	+	High_confidence	2	2	9	0.402263	3.000000	chr19	31588069	31588503	LTR|ERV1|MER50	-	chr19	31588225	31593639	STRG.268378.3	+	31588225,31592408	31591310,31593639	0.888889
testis_male_adult_37_years	chr14	90536248	90536266	90536265	-	RAMPAGE_only	9	12	27	1.206789	4.053661	chr14	90536076	90536752	LINE|L2|L2a	+	chr14	90524563	90816417	TTC7B|ENST00000328459.10	-	90524563,90578105,90593485,90610741,90617928,90644047,90646950,90652840,90654992,90657173,90658303,90676522,90680471,90689539,90695499,90730074,90744791,90780737,90786173,90816174	90541589,90578308,90593626,90610839,90618045,90644208,90647023,90652898,90655110,90657278,90658387,90676660,90680535,90689712,90695578,90730196,90744922,90780906,90786328,90816417	0.925926
testis_male_adult_37_years	chr16	12271224	12271245	12271244	+	RAMPAGE_only	3	3	8	0.357567	2.807355	chr16	12271105	12271599	LTR|ERVL-MaLR|MLT1F2	-	chr16	12129696	12527397	SNX29|ENST00000564791.5	+	12129696,12199600,12277932,12356162,12398445,12403447,12477718,12524701,12526549	12129758,12199683,12278036,12356279,12398501,12403529,12477859,12524841,12527397	0.625000
testis_male_adult_37_years	chr1	42916420	42916421	42916420	-	High_confidence	33	34	35	1.564356	4.306075	chr1	42916108	42917544	LTR|ERV1|LTR12C	-	chr1	42914872	42916437	STRG.4251.1	-	42914872	42916437	0.885714
testis_male_adult_37_years	chr19	38585085	38585093	38585085	+	High_confidence	2	2	7	0.312871	2.521641	chr19	38585134	38585361	SINE|MIR|MIR	+	chr19	38585927	38587521	STRG.269582.7	+	38585927,38586090,38586524,38587324	38586002,38586191,38586576,38587521	0.857143
testis_male_adult_37_years	chr1	102853849	102853860	102853849	+	High_confidence	2	2	8	0.357567	2.500000	chr1	102853603	102855052	LTR|ERV1|LTR12C	+	chr1	102853784	102855128	STRG.10620.1	+	102853784	102855128	1.000000
testis_male_adult_37_years	chr12	130577536	130577544	130577543	-	RAMPAGE_only	3	3	8	0.357567	2.807355	chr12	130577324	130577688	LTR|ERVL-MaLR|THE1D	-	chr12	130456495	130633861	RIMBP2|ENST00000541840.2	-	130456495,130470692,130478911,130506647,130517827,130628321,130633804	130456700,130470743,130479016,130506770,130517917,130628456,130633861	0.500000
testis_male_adult_37_years	chr13	104319808	104319821	104319820	+	High_confidence	3	3	7	0.312871	2.584963	chr13	104319708	104319994	SINE|Alu|AluY	-	chr13	104319814	104323778	STRG.220784.1	+	104319814,104323400	104320120,104323778	0.714286
testis_male_adult_37_years	chr11	118647719	118647738	118647719	+	RAMPAGE_only	5	5	15	0.670438	2.950212	chr11	118647666	118647768	SINE|MIR|MIRb	-	chr11	118646333	118657152	PHLDB1|ENST00000526537.2	+	118646333,118650076,118650444,118655604,118656682	118648076,118650193,118650547,118655690,118657152	0.933333
testis_male_adult_37_years	chr17	37623656	37623711	37623656	-	RAMPAGE_only	11	11	55	2.458274	4.977459	chr17	37623468	37623691	LINE|L2|L2c	+	chr17	37613754	37626086	STRG.253442.20	-	37613754,37618291,37619767,37620872,37621397,37624343,37625894	37614353,37618384,37619839,37621277,37621520,37624434,37626086	0.909091
testis_male_adult_37_years	chr13	77818205	77818212	77818205	+	High_confidence	7	10	16	0.715134	3.773557	chr13	77817983	77818295	LINE|L2|L2c	-	chr13	77818936	77908442	EDNRB-AS1|NR_103853.1	+	77818936,77828242,77829027,77830552,77833364,77833732,77907691	77819010,77828415,77829102,77830603,77833427,77834990,77908442	0.625000
testis_male_adult_37_years	chr10	65570509	65570522	65570521	+	High_confidence	36	60	157	7.017255	6.200591	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.573248
testis_male_adult_37_years	chr15	84570175	84570219	84570175	-	High_confidence	2	2	10	0.446959	3.121928	chr15	84570009	84570168	SINE|Alu|AluSq10	-	chr15	84526780	84570700	UBE2Q2P1|ENST00000354771.8	-	84526780,84527618,84534179,84538531,84539703,84542146,84546220,84554960,84561959,84570598	84526876,84527667,84534238,84538616,84539788,84542284,84546277,84555070,84562061,84570700	0.700000
testis_male_adult_37_years	chrX	119895857	119895895	119895894	+	High_confidence	24	40	119	5.318811	5.843277	chrX	119895758	119895911	SINE|MIR|MIR	+	chrX	119895836	119920716	AKAP14|ENST00000371431.7	+	119895836,119896154,119903213,119903494,119914698,119919910,119920507	119895987,119896267,119903392,119903586,119914878,119919963,119920716	0.899160
testis_male_adult_37_years	chr2	182608480	182608506	182608480	-	RAMPAGE_only	3	3	14	0.625742	3.238901	chr2	182608314	182609753	LTR|ERV1|LTR12C	+	chr2	182234431	182523192	PDE1A|ENST00000495511.1	-	182234431,182240109,182264300,182522275,182523102	182234498,182240292,182264414,182522386,182523192	0.500000
testis_male_adult_37_years	chr18	6834479	6834495	6834493	+	High_confidence	221	277	475	21.230549	6.658886	chr18	6834140	6834545	LINE|L2|L2c	-	chr18	6834479	6912415	ARHGAP28|ENST00000531294.5	+	6834479,6837196,6851033,6859811,6868149,6870589,6873408,6873683,6876130,6882136,6887156,6889887,6890429,6894834,6896501,6908959,6912059	6834539,6837414,6851115,6859897,6868234,6870732,6873574,6873775,6876208,6882299,6887239,6890085,6890543,6894891,6896626,6909024,6912415	0.947368
testis_male_adult_37_years	chr1	196933682	196933713	196933682	-	High_confidence	18	27	105	4.693069	5.616635	chr1	196933509	196934428	LTR|ERV1|LTR12C	+	chr1	196912332	196933813	STRG.17342.2	-	196912332,196922894,196933456	196912683,196923011,196933813	0.809524
testis_male_adult_37_years	chr8	116950234	116950246	116950234	+	High_confidence	3	3	15	0.670438	3.467720	chr8	116948944	116950299	LTR|ERV1|LTR12C	-	chr8	116950948	117147011	SLC30A8|ENST00000521035.5	+	116950948,117006990,117135231,117146818,117146953	116951119,117007113,117135398,117146848,117147011	0.533333
testis_male_adult_37_years	chrX	135893461	135893476	135893461	+	High_confidence	4	4	9	0.402263	2.947703	chrX	135893277	135893550	LTR|ERVL|LTR41	-	chrX	135893465	135913061	STRG.296782.1	+	135893465,135896242,135901558,135904476,135905251,135906023,135906410,135906925,135907312,135907700,135908088,135908476,135908863,135909638,135910029,135910414,135911191,135911578,135912320,135912797	135893843,135896329,135901691,135904569,135905392,135906164,135906551,135907066,135907453,135907841,135908229,135908617,135909004,135909779,135910170,135910555,135911332,135911953,135912414,135913061	1.000000
testis_male_adult_37_years	chrX	32490447	32490463	32490462	-	RAMPAGE_only	3	4	7	0.312871	2.584963	chrX	32490424	32490586	LTR|ERVL|LTR33A	+	chrX	31119227	33128165	DMD|ENST00000619831.4	-	31119227,31126641,31134101,31146290,31147274,31169442,31172347,31173538,31177931,31178668,31180369,31182737,31203960,31206581,31209497,31223046,31260954,31323597,31348555,31444480,31478105,31478982,31496787,31507280,31627672,31657989,31679374,31729630,31773959,31819974,31836717,31875187,31929595,31932079,31968338,32151389,32216888,32216906,32287528,32310081,32342099,32343133,32345942,32348405,32362787,32364581,32365019,32380509,32386309,32389500,32390070,32411751,32438240,32441179,32448455,32454661,32463438,32464585,32468497,32472163,32484918,32491276,32501754,32518007,32545158,32565701,32573529,32573744,32595756,32614302,32644131,32644963,32697869,32699111,32809492,32816467,32823294,32844782,32849727,33020138,33128146	31121930,31126673,31134194,31146414,31147518,31169601,31172413,31173604,31177970,31178805,31180481,31182904,31204118,31206667,31209699,31223121,31261016,31323658,31348634,31444627,31478374,31479103,31496944,31507453,31627862,31658144,31679586,31729748,31774192,31820083,31836819,31875373,31929745,31932227,31968450,32151426,32216903,32217063,32287701,32310276,32342282,32343286,32346080,32348528,32362958,32364710,32365199,32380680,32386465,32389674,32390181,32411913,32438390,32441314,32448638,32454832,32463594,32464699,32468710,32472309,32485099,32491518,32501842,32518131,32545334,32565881,32573637,32573846,32595876,32614453,32644313,32645152,32697998,32699293,32809611,32816640,32823387,32844860,32849820,33020200,33128165	0.857143
testis_male_adult_37_years	chr8	10057720	10057724	10057723	+	RAMPAGE_only	16	21	31	1.385573	4.625054	chr8	10057533	10057917	LTR|ERVL-MaLR|MSTA	+	chr8	10054369	10428365	STRG.142670.2	+	10054369,10207832,10245103,10301533,10319882,10428147	10059099,10207901,10245223,10301638,10319989,10428365	0.645161
testis_male_adult_37_years	chr16	70590319	70590335	70590328	+	RAMPAGE_only	22	23	57	2.547666	4.969920	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.824561
testis_male_adult_37_years	chr18	39800293	39800316	39800293	-	High_confidence	28	29	141	6.302121	6.539561	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.503546
testis_male_adult_37_years	chr6	147131952	147131986	147131952	-	High_confidence	108	109	213	9.520225	6.455861	chr6	147131896	147132081	DNA|DNA|UCON78	+	chr6	146911825	147131986	STXBP5-AS1|ENST00000431143.5	-	146911825,146962390,146972044,147001440,147074804,147119416,147131865	146911939,146962566,146972070,147001543,147074847,147119477,147131986	0.596244
testis_male_adult_37_years	chr1	70412327	70412337	70412327	+	RAMPAGE_only	5	6	15	0.670438	2.789898	chr1	70412323	70412622	SINE|Alu|AluSq2	+	chr1	70411271	70439570	CTH|ENST00000370938.7	+	70411271,70415955,70417936,70421565,70424284,70429793,70430316,70432082,70433827,70435124,70438687,70439100	70411583,70416037,70418032,70421675,70424416,70429851,70430394,70432235,70433949,70435177,70438826,70439570	0.933333
testis_male_adult_37_years	chr3	197899949	197899960	197899949	-	RAMPAGE_only	3	3	11	0.491655	3.277613	chr3	197899702	197901148	LINE|L1|L1M1	+	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.818182
testis_male_adult_37_years	chr7	53921456	53921460	53921459	+	High_confidence	110	113	198	8.849787	5.586036	chr7	53921024	53921837	LTR|ERV1|LTR12D	+	chr7	53921466	53922625	STRG.130981.1	+	53921466	53922625	0.974747
testis_male_adult_37_years	chr9	36393596	36393599	36393596	-	RAMPAGE_only	2	3	7	0.312871	2.584963	chr9	36393549	36393994	LTR|ERVL-MaLR|MLT1E1A	+	chr9	36336395	36400216	RNF38|ENST00000259605.10	-	36336395,36342324,36344831,36351114,36352741,36353169,36356302,36357774,36369718,36375933,36390466,36400096	36339814,36342424,36344953,36351199,36352848,36353331,36356473,36357942,36369932,36376127,36390616,36400216	0.857143
testis_male_adult_37_years	chr2	177683486	177683498	177683497	-	High_confidence	3	3	8	0.357567	2.521641	chr2	177683459	177683750	LTR|ERV1|MER61B	+	chr2	177669530	177683470	PDE11A|ENST00000466790.1	-	177669530,177675454,177677880,177680825,177683293	177669567,177675518,177677947,177680903,177683470	0.625000
testis_male_adult_37_years	chrX	5726324	5726325	5726324	-	High_confidence	26	29	34	1.519660	4.268344	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.911765
testis_male_adult_37_years	chr6	169692617	169692640	169692619	-	RAMPAGE_only	5	9	20	0.893918	3.403702	chr6	169691841	169692990	LINE|L1|L1PBa	+	chr6	169664176	169701930	STRG.124751.8	-	169664176,169664769,169670568,169672254,169688816,169689126,169701550	169664632,169668776,169670693,169672396,169689012,169695065,169701930	1.000000
testis_male_adult_37_years	chr5	56296377	56296402	56296401	+	High_confidence	2	2	7	0.312871	2.807355	chr5	56295169	56296749	LTR|ERV1|LTR12C	+	chr5	56296207	56297116	STRG.93514.1	+	56296207	56297116	0.714286
testis_male_adult_37_years	chr10	30902140	30902141	30902140	-	RAMPAGE_only	286	291	381	17.029135	5.951201	chr10	30901724	30903353	LTR|ERV1|LTR12C	-	chr10	30844780	30903891	STRG.172606.8	-	30844780,30848530,30876997,30901613	30845573,30850367,30877065,30903891	0.971129
testis_male_adult_37_years	chr7	87040214	87040249	87040214	-	RAMPAGE_only	3	3	12	0.536351	3.584963	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.500000
testis_male_adult_37_years	chr3	72060208	72060242	72060208	-	High_confidence	11	11	52	2.324186	4.885737	chr3	72060163	72060375	SINE|MIR|MIRb	-	chr3	72055277	72060216	STRG.55197.2	-	72055277,72059686	72055962,72060216	0.942308
testis_male_adult_37_years	chr12	56778775	56778804	56778775	+	High_confidence	3	5	14	0.625742	3.664498	chr12	56778668	56778974	SINE|Alu|AluY	-	chr12	56778689	56779559	STRG.203707.6	+	56778689,56779155	56779043,56779559	0.571429
testis_male_adult_37_years	chr21	36005319	36005320	36005319	+	High_confidence	7	7	9	0.402263	2.725481	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	1.000000
testis_male_adult_37_years	chr2	239008925	239008946	239008925	+	High_confidence	4	4	8	0.357567	2.521641	chr2	239008874	239009096	LINE|L1|L1MEj	-	chr2	239009277	239010141	STRG.46928.1	+	239009277	239010141	0.875000
testis_male_adult_37_years	chr12	14419187	14419211	14419187	+	High_confidence	3	3	12	0.536351	3.418296	chr12	14419086	14419311	SINE|MIR|MIR	-	chr12	14419187	14425461	ATF7IP|ENST00000396279.2	+	14419187,14423908	14419361,14425461	0.916667
testis_male_adult_37_years	chr3	70617624	70617652	70617624	-	High_confidence	13	13	33	1.474964	4.476410	chr3	70617119	70617866	LTR|ERV1|LTR17	+	chr3	70605584	70617849	STRG.55162.1	-	70605584,70608574,70617370	70605678,70608722,70617849	0.787879
testis_male_adult_37_years	chr16	57641682	57641699	57641685	+	High_confidence	3	4	16	0.715134	3.875000	chr16	57641565	57641864	SINE|Alu|AluSz6	-	chr16	57640964	57651468	ADGRG1|ENST00000563414.5	+	57640964,57641590,57650252,57651199	57641064,57641708,57650351,57651468	0.875000
testis_male_adult_37_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	28	29	54	2.413578	3.964708	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.907407
testis_male_adult_37_years	chr7	99410146	99410162	99410146	+	High_confidence	9	10	19	0.849222	3.836592	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.789474
testis_male_adult_37_years	chr10	63125517	63125559	63125550	-	High_confidence	4	4	15	0.670438	3.521641	chr10	63125505	63125919	LTR|ERV1|MER57B2	+	chr10	63123937	63125537	AL590502.1|ENST00000433019.1	-	63123937,63124724,63125424	63124182,63124871,63125537	0.933333
testis_male_adult_37_years	chrX	110445225	110445256	110445255	+	RAMPAGE_only	3	3	10	0.446959	2.646439	chrX	110445166	110445432	SINE|MIR|MIRb	+	chrX	110450564	110456326	RTL9|ENST00000540313.1	+	110450564,110455201	110454664,110456326	1.000000
testis_male_adult_37_years	chr3	197814327	197814328	197814327	+	RAMPAGE_only	8	9	11	0.491655	3.277613	chr3	197814083	197814438	LTR|ERVL-MaLR|THE1A	-	chr3	197791278	197884302	LRCH3|ENST00000425562.6	+	197791278,197814907,197817175,197820324,197826877,197829563,197830769,197832196,197835673,197839320,197847408,197847871,197852560,197854391,197858833,197865422,197866111,197870159,197871324,197875697,197883540	197791540,197815052,197817302,197820430,197827014,197829673,197830863,197832317,197835822,197839397,197847460,197848021,197852620,197854445,197858905,197865471,197866219,197870278,197871462,197875775,197884302	0.818182
testis_male_adult_37_years	chr9	15654663	15654664	15654663	+	RAMPAGE_only	5	5	8	0.357567	2.807355	chr9	15654663	15654853	LINE|L1|L1P1	+	chr9	15553098	15971899	CCDC171|NM_173550.2	+	15553098,15563977,15571623,15578848,15591365,15594040,15623266,15657126,15666162,15678757,15695234,15721768,15723680,15724775,15727868,15729609,15744272,15745514,15777599,15778967,15784508,15846701,15848892,15874531,15920269,15971608	15553302,15564129,15571759,15579023,15591556,15594172,15623413,15657219,15666323,15678896,15695337,15721875,15723746,15724976,15728036,15729798,15744777,15745631,15777826,15779150,15784694,15846847,15848947,15874663,15920422,15971899	0.875000
testis_male_adult_37_years	chr4	74883344	74883384	74883344	+	High_confidence	19	19	40	1.787836	4.932138	chr4	74883138	74883696	LINE|L2|L2b	-	chr4	74883332	74887519	STRG.76201.1	+	74883332,74886436	74883518,74887519	0.675000
testis_male_adult_37_years	chr2	38397724	38397741	38397724	-	RAMPAGE_only	3	3	6	0.268175	2.584963	chr2	38397128	38398412	LTR|ERV1|LTR12C	+	chr2	38391091	38391730	STRG.27521.1	-	38391091	38391730	0.500000
testis_male_adult_37_years	chrX	27631883	27631884	27631883	+	RAMPAGE_only	9	9	10	0.446959	3.169925	chrX	27631805	27631892	LINE|L1|L1MB1	-	chrX	27590382	27748791	DCAF8L2|ENST00000451261.6	+	27590382,27631878,27677835,27716087,27746837	27590440,27632000,27677912,27716171,27748791	0.500000
testis_male_adult_37_years	chr7	128622497	128622529	128622497	+	RAMPAGE_only	9	9	23	1.028006	3.658993	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.869565
testis_male_adult_37_years	chr18	58780213	58780220	58780219	-	High_confidence	3	4	7	0.312871	2.584963	chr18	58780024	58780390	LTR|ERVL-MaLR|MSTA	-	chr18	58779568	58780201	STRG.262759.3	-	58779568	58780201	0.714286
testis_male_adult_37_years	chr21	31088016	31088017	31088016	-	High_confidence	294	298	421	18.816970	6.010364	chr21	31087646	31088758	LTR|ERV1|LTR12D	-	chr21	31013912	31088182	STRG.280817.2	-	31013912,31016762,31017660,31087614	31014768,31016866,31017878,31088182	0.907363
testis_male_adult_37_years	chr13	98328190	98328228	98328227	+	High_confidence	62	66	240	10.727014	6.065570	chr13	98327733	98328401	LTR|ERV1|MER72	-	chr13	98328190	98343812	FARP1|ENST00000601361.1	+	98328190,98328535,98343761	98328324,98328807,98343812	0.687500
testis_male_adult_37_years	chr21	36580152	36580172	36580152	+	High_confidence	7	8	30	1.340877	4.375222	chr21	36580027	36580226	LTR|ERVL-MaLR|MLT1M	+	chr21	36580345	36580799	STRG.281380.1	+	36580345	36580799	0.600000
testis_male_adult_37_years	chr5	4866689	4866707	4866689	-	High_confidence	6	7	20	0.893918	4.021928	chr5	4866518	4866646	LTR|ERVL-MaLR|MLT1A0	-	chr5	4780099	4866760	STRG.88566.1	-	4780099,4805719,4866015	4784964,4805848,4866760	0.800000
testis_male_adult_37_years	chr5	142758247	142758272	142758271	+	RAMPAGE_only	3	3	11	0.491655	2.845351	chr5	142757477	142758516	LINE|L2|L2a	-	chr5	142745599	142760998	LINC01844|ENST00000432677.1	+	142745599,142756733,142757826,142759085	142745718,142756830,142757934,142760998	1.000000
testis_male_adult_37_years	chr2	210735153	210735154	210735153	+	High_confidence	34	34	36	1.609052	4.079679	chr2	210734880	210735578	LTR|ERV1|LTR12_	+	chr2	210735337	210758401	STRG.44396.1	+	210735337,210758347	210735599,210758401	0.805556
testis_male_adult_37_years	chr19	45823790	45823835	45823834	-	High_confidence	2	2	8	0.357567	2.521641	chr19	45823777	45823871	LINE|RTE-BovB|MamRTE1	-	chr19	45816482	45824012	SYMPK|ENST00000598329.2	-	45816482,45816797,45817958,45821383,45822755,45823371,45823766	45816577,45816974,45818146,45821485,45822846,45823472,45824012	0.750000
testis_male_adult_37_years	chr3	54628869	54628892	54628891	+	RAMPAGE_only	4	4	8	0.357567	3.000000	chr3	54628655	54629129	LTR|ERVL|LTR33A	-	chr3	54626214	54808048	STRG.53702.9	+	54626214,54627786,54642127,54752598,54764217	54626523,54627876,54642241,54752677,54808048	0.750000
testis_male_adult_37_years	chr20	36754962	36754981	36754962	-	RAMPAGE_only	10	10	20	0.893918	3.621928	chr20	36754887	36754971	LINE|L2|L2a	+	chr20	36751794	36773720	DSN1|ENST00000373740.7	-	36751794,36754762,36755681,36758086,36758557,36762460,36766768,36767968,36770872,36771424,36773661	36752897,36754850,36755829,36758161,36758617,36762548,36766841,36768042,36770977,36771473,36773720	1.000000
testis_male_adult_37_years	chr13	71483061	71483088	71483087	-	High_confidence	80	84	220	9.833096	5.360995	chr13	71482793	71483101	SINE|Alu|AluSq2	-	chr13	71439945	71483095	STRG.216896.4	-	71439945,71475140,71475705,71479168,71483033	71440692,71475209,71475849,71479316,71483095	0.977273
testis_male_adult_37_years	chr5	31530853	31530878	31530853	-	RAMPAGE_only	4	4	14	0.625742	2.950212	chr5	31530667	31530954	LINE|L2|L2c	+	chr5	31400496	31532061	DROSHA|ENST00000511367.6	-	31400496,31405676,31406852,31409055,31409249,31410745,31421271,31422786,31424426,31429474,31431575,31435764,31437238,31448546,31449280,31451532,31464235,31466181,31467938,31472062,31483553,31484880,31486490,31493206,31495285,31504554,31508620,31511034,31514987,31515453,31521122,31526078,31529039,31530797,31531989	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31422944,31424471,31429545,31431678,31435864,31437298,31448607,31449419,31451640,31464343,31466281,31468063,31472232,31483628,31484962,31486562,31493293,31495372,31504635,31508775,31511176,31515219,31515564,31521215,31526912,31529105,31530924,31532061	1.000000
testis_male_adult_37_years	chr19	40347313	40347314	40347313	-	RAMPAGE_only	6	6	6	0.268175	2.584963	chr19	40347248	40347554	SINE|Alu|AluSp	+	chr19	40321062	40348386	C19orf47|ENST00000392035.6	-	40321062,40324005,40326333,40328412,40333850,40336109,40336319,40341785,40348323	40322376,40324076,40326486,40328550,40333929,40336224,40336407,40341890,40348386	0.833333
testis_male_adult_37_years	chr12	18714804	18714805	18714804	-	High_confidence	7	7	10	0.446959	2.947703	chr12	18714673	18714885	DNA|hAT-Charlie|MER20	+	chr12	18683181	18714771	PLCZ1|ENST00000538330.5	-	18683181,18684129,18688088,18694909,18696149,18699793,18701500,18705165,18712841,18713736,18714655	18683324,18684279,18688218,18695079,18696266,18699950,18701776,18705284,18712986,18713825,18714771	0.800000
testis_male_adult_37_years	chr10	48178926	48178927	48178926	-	High_confidence	5	5	7	0.312871	2.521641	chr10	48178846	48179067	SINE|MIR|MIR	+	chr10	48158892	48178890	FRMPD2|ENST00000463706.1	-	48158892,48163327,48168594,48170993,48172945,48174869,48175845,48177711,48178817	48159238,48163671,48168693,48171208,48173093,48174955,48175939,48178151,48178890	0.857143
testis_male_adult_37_years	chr20	36676860	36676861	36676860	-	RAMPAGE_only	7	7	9	0.402263	3.000000	chr20	36676802	36677908	LTR|ERV1|MER52C	+	chr20	36652374	36700675	STRG.276292.4	-	36652374,36653093,36656359,36656496,36660336,36665045,36665235,36666288,36671340,36680815,36682517,36684412,36687491,36688678,36700434	36653030,36653701,36656411,36656532,36660384,36665097,36665301,36666392,36671397,36680902,36682578,36684475,36687612,36688784,36700675	0.777778
testis_male_adult_37_years	chr17	49248236	49248237	49248236	+	High_confidence	176	186	218	9.743704	6.523954	chr17	49247966	49248413	LINE|L2|L2b	-	chr17	49248238	49256449	FLJ40194|ENST00000322227.6	+	49248238,49252245,49252853,49254690	49248302,49252674,49252918,49256449	0.779817
testis_male_adult_37_years	chr4	184812247	184812259	184812258	-	High_confidence	29	29	54	2.413578	4.809599	chr4	184812232	184812305	LINE|L2|L2a	+	chr4	184755594	184812259	ACSL1|NM_001286708.1	-	184755594,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621,184768315,184770398,184773080,184773662,184773842,184776483,184776883,184780331,184783926,184788616,184803319,184812159	184757265,184757706,184757920,184760500,184762523,184763255,184764925,184765986,184766756,184768450,184770476,184773154,184773714,184773875,184776662,184776983,184780433,184783991,184788731,184803546,184812259	0.981481
testis_male_adult_37_years	chr21	25418211	25418238	25418237	-	RAMPAGE_only	8	11	29	1.296181	4.297131	chr21	25417560	25419020	LINE|L1|L1MDa	+	chr21	25385819	25431701	LINC00158|NR_024027.2	-	25385819,25420707,25424553,25429765,25431177	25386338,25420800,25424649,25430009,25431701	0.896552
testis_male_adult_37_years	chr11	18323389	18323390	18323389	+	High_confidence	6	6	9	0.402263	3.169925	chr11	18323295	18323452	SINE|Alu|FRAM	-	chr11	18322595	18367044	GTF2H1|ENST00000265963.8	+	18322595,18333059,18335753,18338108,18339563,18341260,18341527,18347587,18347831,18351880,18352328,18357951,18358524,18360614,18365782	18322740,18333228,18335946,18338274,18339657,18341410,18341607,18347715,18347919,18351969,18352446,18358042,18358640,18360707,18367044	0.666667
testis_male_adult_37_years	chr2	231270659	231270700	231270673	+	High_confidence	15	16	62	2.771145	5.635655	chr2	231270419	231270687	LINE|L1|HAL1	-	chr2	231270742	231291435	ARMC9|ENST00000481520.1	+	231270742,231272954,231276635,231278381,231282058,231291352	231271072,231273078,231276775,231278458,231282133,231291435	0.903226
testis_male_adult_37_years	chr4	4575808	4575809	4575808	-	High_confidence	5	5	8	0.357567	2.807355	chr4	4575763	4575859	SINE|MIR|MIR	-	chr4	4574062	4576235	STRG.69368.2	-	4574062	4576235	0.500000
testis_male_adult_37_years	chr8	2623605	2623641	2623612	-	High_confidence	4	5	16	0.715134	3.625000	chr8	2623456	2623761	LINE|L1|L1M2	+	chr8	2595138	2623735	STRG.142015.3	-	2595138,2596624,2604780,2623294	2595700,2596704,2604930,2623735	0.625000
testis_male_adult_37_years	chr15	95638315	95638327	95638315	+	High_confidence	7	7	17	0.759830	3.852169	chr15	95638216	95638514	SINE|Alu|AluYm1	-	chr15	95638348	95825356	AC015574.1|ENST00000616588.4	+	95638348,95730363,95810078,95825188	95638519,95730442,95810116,95825356	0.529412
testis_male_adult_37_years	chr8	34784811	34784823	34784811	+	High_confidence	14	15	25	1.117397	4.133661	chr8	34784701	34785009	SINE|Alu|AluY	-	chr8	34784811	34837969	LINC01288|ENST00000648617.1	+	34784811,34792757,34819271,34837580	34785071,34792965,34819405,34837969	1.000000
testis_male_adult_37_years	chr13	44196012	44196016	44196012	+	High_confidence	82	83	133	5.944554	5.809562	chr13	44195961	44196131	SINE|MIR|MIRb	-	chr13	44196005	44198461	STRG.214070.2	+	44196005	44198461	0.962406
testis_male_adult_37_years	chr10	92497520	92497522	92497521	-	High_confidence	4	6	9	0.402263	2.750000	chr10	92497446	92497543	DNA|TcMar-Tigger|MER2	+	chr10	92451683	92497550	STRG.178011.3	-	92451683,92455575,92456358,92461190,92463730,92465675,92468878,92470253,92474840,92475883,92479276,92480792,92483254,92487195,92490492,92497480	92454539,92455643,92456431,92461252,92464003,92465843,92468990,92470345,92474961,92475994,92479421,92480916,92483337,92487318,92490595,92497550	0.888889
testis_male_adult_37_years	chr10	52955433	52955471	52955455	-	High_confidence	50	52	134	5.989249	5.861274	chr10	52946907	52955585	LTR|ERV1|HERVS71-int	-	chr10	52946430	52955585	AC073174.2|ENST00000648218.1	-	52946430,52955381	52952970,52955585	0.977612
testis_male_adult_37_years	chr3	25873691	25873731	25873718	-	High_confidence	28	29	80	3.575671	5.702391	chr3	25873562	25874112	LTR|ERVL-MaLR|MLT1G1	-	chr3	25869922	25873755	STRG.51294.2	-	25869922,25871800	25870135,25873755	0.862500
testis_male_adult_37_years	chr9	108273052	108273054	108273052	-	High_confidence	4	5	8	0.357567	2.807355	chr9	108272755	108273149	LINE|CR1|L3	-	chr9	108270960	108272465	STRG.166053.1	-	108270960	108272465	0.625000
testis_male_adult_37_years	chr18	46087012	46087066	46087042	-	High_confidence	4	4	24	1.072701	4.105389	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.916667
testis_male_adult_37_years	chr18	76122832	76122869	76122855	-	High_confidence	6	9	31	1.385573	3.889050	chr18	76122565	76123022	LTR|ERVL-MaLR|MLT1C	-	chr18	76121835	76122860	STRG.264463.1	-	76121835	76122860	0.935484
testis_male_adult_37_years	chr12	103802503	103802504	103802503	+	High_confidence	6	6	9	0.402263	2.947703	chr12	103802465	103802795	LTR|ERVL-MaLR|MLT1K	+	chr12	103802574	103814570	STRG.208641.1	+	103802574,103814164	103803034,103814570	0.777778
testis_male_adult_37_years	chr4	146111709	146111735	146111734	-	High_confidence	4	4	9	0.402263	2.750000	chr4	146111523	146111735	SINE|MIR|MIRb	-	chr4	146110822	146111717	LINC01095|ENST00000515703.1	-	146110822,146111310,146111600	146110993,146111473,146111717	0.555556
testis_male_adult_37_years	chr16	21153547	21153548	21153547	+	High_confidence	37	37	43	1.921923	4.737323	chr16	21152413	21153830	LTR|ERV1|LTR12C	+	chr16	21153184	21154967	STRG.244082.1	+	21153184	21154967	0.883721
testis_male_adult_37_years	chr1	204017325	204017361	204017325	+	High_confidence	3	3	8	0.357567	3.000000	chr1	204017244	204017390	LTR|ERV1|LTR29	-	chr1	204017340	204029538	STRG.18045.1	+	204017340,204028464	204017686,204029538	0.750000
testis_male_adult_37_years	chr22	24011715	24011716	24011715	+	High_confidence	13	13	16	0.715134	3.773557	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.812500
testis_male_adult_37_years	chrX	93698428	93698467	93698428	+	RAMPAGE_only	2	2	10	0.446959	2.947703	chrX	93698397	93698820	LINE|L2|L2-3_Crp	-	chrX	93674205	93712265	FAM133A|ENST00000332647.5	+	93674205,93674700,93698396,93709316	93674274,93674752,93698485,93712265	0.800000
testis_male_adult_37_years	chr1	166850186	166850241	166850227	+	RAMPAGE_only	4	5	16	0.715134	3.773557	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.937500
testis_male_adult_37_years	chr7	137268141	137268178	137268177	-	High_confidence	13	13	69	3.084017	5.118723	chr7	137267941	137268351	LTR|ERV1|HERVE_a-int	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.985507
testis_male_adult_37_years	chr11	35269021	35269043	35269021	-	RAMPAGE_only	5	5	13	0.581047	2.807390	chr11	35268972	35269342	LTR|ERVL-MaLR|MLT1A0	+	chr11	35254420	35265745	SLC1A2|ENST00000464522.2	-	35254420,35265526	35254808,35265745	0.846154
testis_male_adult_37_years	chr8	120059777	120059778	120059777	+	High_confidence	22	25	28	1.251485	4.521641	chr8	120059600	120059954	LTR|ERVL-MaLR|THE1C	+	chr8	120059779	120232090	COL14A1|ENST00000498051.6	+	120059779,120071095,120105582,120107462,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120213934,120216350,120225087,120226626,120227219,120228709,120231466	120059871,120071165,120105627,120107514,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120214061,120216490,120225214,120226766,120227352,120228769,120232090	0.714286
testis_male_adult_37_years	chr1	197360347	197360372	197360347	+	High_confidence	8	8	36	1.609052	4.683542	chr1	197360090	197360608	LTR|ERVL|MER70C	+	chr1	197360348	197478412	STRG.17356.1	+	197360348,197420999,197427453,197429448,197434705,197438546,197442165,197477663	197360479,197421956,197428001,197429614,197435612,197438675,197442292,197478412	0.944444
testis_male_adult_37_years	chrX	88747219	88747258	88747245	+	High_confidence	34	46	153	6.838471	5.065285	chrX	88747038	88747505	LTR|ERV1?|LTR103_Mam	+	chrX	88747234	88754780	CPXCR1|ENST00000373111.5	+	88747234,88749317,88753406	88747331,88749423,88754780	0.986928
testis_male_adult_37_years	chr8	105358456	105358499	105358474	+	High_confidence	3	3	19	0.849222	3.725481	chr8	105358476	105358672	DNA|hAT-Charlie|MER5A	+	chr8	105358477	105634299	ZFPM2|ENST00000520027.5	+	105358477,105419143,105444279,105561362,105634245	105358637,105419302,105444381,105561481,105634299	0.736842
testis_male_adult_37_years	chr4	187506457	187506458	187506457	+	High_confidence	25	25	25	1.117397	4.053661	chr4	187505447	187506776	LTR|ERV1|LTR12C	+	chr4	187506630	187506938	STRG.87704.1	+	187506630	187506938	0.720000
testis_male_adult_37_years	chr2	38836117	38836143	38836124	+	High_confidence	4	4	14	0.625742	3.039149	chr2	38834351	38836493	DNA|TcMar-Tigger|Tigger2	+	chr2	38835498	38842980	STRG.27564.1	+	38835498,38842867	38836407,38842980	0.785714
testis_male_adult_37_years	chr19	11895308	11895372	11895308	+	RAMPAGE_only	4	4	24	1.072701	4.001629	chr19	11895205	11895760	LTR|ERVL|MER54A	-	chr19	11887854	11914329	STRG.266426.13	+	11887854,11903904,11904648	11903699,11903965,11914329	1.000000
testis_male_adult_37_years	chr8	61825324	61825343	61825324	+	High_confidence	110	115	215	9.609617	6.863834	chr8	61825360	61825600	LTR|ERVL-MaLR|MLT1E1	+	chr8	61825347	61944180	AC025524.2|ENST00000518593.5	+	61825347,61834872,61852658,61944138	61825532,61834996,61852776,61944180	0.534884
testis_male_adult_37_years	chr12	39538765	39538769	39538765	+	RAMPAGE_only	3	3	7	0.312871	2.584963	chr12	39538653	39539088	LTR|ERV1|MER48	+	chr12	39548381	39549982	STRG.201270.1	+	39548381,39548994,39549883	39548607,39549337,39549982	0.714286
testis_male_adult_37_years	chr19	28445181	28445214	28445213	+	High_confidence	13	13	46	2.056011	4.934009	chr19	28444761	28445468	LTR|ERV1|MER51A	+	chr19	28445104	28448159	STRG.267763.1	+	28445104,28445781	28445688,28448159	0.978261
testis_male_adult_37_years	chr5	32403105	32403117	32403116	-	RAMPAGE_only	10	12	22	0.983310	4.095795	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
testis_male_adult_37_years	chr13	93455105	93455215	93455214	+	RAMPAGE_only	13	13	92	4.112022	4.808555	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.913043
testis_male_adult_37_years	chr16	19607765	19607804	19607803	+	High_confidence	16	23	94	4.201414	4.925085	chr16	19607781	19608002	SINE|MIR|MIR	+	chr16	19607788	19616191	VPS35L|ENST00000540101.2	+	19607788,19608177,19608973,19610321,19611727,19616113	19607861,19608274,19609021,19610415,19611798,19616191	0.797872
testis_male_adult_37_years	chr21	19493811	19493860	19493831	-	High_confidence	6	6	27	1.206789	4.282484	chr21	19493426	19494814	LTR|ERV1|LTR12C	+	chr21	19277021	19494122	STRG.279208.1	-	19277021,19344476,19493424	19277418,19344565,19494122	0.851852
testis_male_adult_37_years	chr16	13348721	13348722	13348721	+	High_confidence	4	4	7	0.312871	2.584963	chr16	13348586	13348758	LTR|ERVL-MaLR|MLT1O	-	chr16	13348753	13350257	STRG.243240.1	+	13348753,13350179	13348944,13350257	0.571429
testis_male_adult_37_years	chr13	112703291	112703292	112703291	+	RAMPAGE_only	5	5	8	0.357567	2.521641	chr13	112703103	112703441	LTR|ERVL-MaLR|MLT1A	-	chr13	112785171	112803754	STRG.221686.16	+	112785171,112789755	112789469,112803754	0.625000
testis_male_adult_37_years	chr18	2589120	2589125	2589120	+	RAMPAGE_only	4	6	11	0.491655	3.321928	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	0.909091
testis_male_adult_37_years	chr10	66079077	66079099	66079077	-	High_confidence	24	24	42	1.877227	4.860856	chr10	66079003	66079183	DNA|TcMar-Tigger|Tigger15a	+	chr10	65920110	66079103	CTNNA3|ENST00000373735.1	-	65920110,65966611,65988691,66069307,66078950	65920617,65966746,65988797,66069489,66079103	0.928571
testis_male_adult_37_years	chr1	152870041	152870060	152870041	+	RAMPAGE_only	3	3	6	0.268175	2.584963	chr1	152870069	152870228	SINE|MIR|MIRc	+	chr1	152878316	152885047	SMCP|ENST00000368765.3	+	152878316,152884402	152878446,152885047	0.833333
testis_male_adult_37_years	chr8	15163906	15163945	15163906	-	RAMPAGE_only	2	2	9	0.402263	3.000000	chr8	15163868	15164193	LTR|ERV1|MER61A	+	chr8	15159835	15161922	STRG.143268.1	-	15159835	15161922	0.777778
testis_male_adult_37_years	chr10	1102690	1102706	1102705	+	RAMPAGE_only	3	3	7	0.312871	2.807355	chr10	1102369	1102769	LTR|ERVL-MaLR|MSTA	-	chr10	1123806	1129252	WDR37|ENST00000482165.1	+	1123806,1124217,1124909,1129212	1124102,1124352,1125024,1129252	0.857143
testis_male_adult_37_years	chrX	24159527	24159549	24159548	+	RAMPAGE_only	3	3	9	0.402263	2.500000	chrX	24159475	24159778	SINE|Alu|AluSq2	-	chrX	24149744	24216089	ZFX|ENST00000379177.5	+	24149744,24151690,24152719,24161714,24172714,24179182,24207325,24207711,24208217,24208899,24210192	24149794,24151800,24152830,24161842,24172800,24179770,24207475,24207855,24208370,24209040,24216089	0.666667
testis_male_adult_37_years	chr10	103181328	103181329	103181328	-	High_confidence	42	43	49	2.190099	4.900025	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103169283	103181320	NT5C2|ENST00000467380.1	-	103169283,103174857,103181184	103169449,103174982,103181320	0.551020
testis_male_adult_37_years	chr11	104194162	104194216	104194215	+	High_confidence	3	3	17	0.759830	3.852169	chr11	104193801	104194659	Retroposon|SVA|SVA_F	+	chr11	104193928	104205029	STRG.192720.1	+	104193928,104200624,104204733	104194473,104200677,104205029	0.647059
testis_male_adult_37_years	chr1	221714417	221714492	221714477	-	High_confidence	10	15	52	2.324186	5.038563	chr1	221714228	221714848	LTR|ERV1|LTR9	+	chr1	221702426	221714932	STRG.19514.4	-	221702426,221706094,221714176	221702677,221706466,221714932	0.826923
testis_male_adult_37_years	chr6	104936998	104937031	104937025	+	High_confidence	24	31	110	4.916548	5.904383	chr6	104936824	104937119	SINE|Alu|AluJb	-	chr6	104936989	105080479	STRG.118150.2	+	104936989,104950460,104958098,105026297,105078413	104937116,104950509,104958286,105026482,105080479	0.854545
testis_male_adult_37_years	chr1	28942726	28942753	28942726	-	RAMPAGE_only	5	6	22	0.983310	4.106603	chr1	28942102	28942946	LTR|ERVL|MER21B	-	chr1	28934553	28935109	STRG.2847.1	-	28934553	28935109	0.681818
testis_male_adult_37_years	chr7	7969105	7969112	7969111	-	High_confidence	25	25	58	2.592362	5.058188	chr7	7969023	7969225	LINE|L1|L1M4b	-	chr7	7943619	7969139	STRG.125963.1	-	7943619,7949943,7955860,7958519,7968543	7946286,7950506,7956016,7958618,7969139	0.931034
testis_male_adult_37_years	chr18	55840313	55840348	55840313	-	High_confidence	181	183	279	12.470154	4.001194	chr18	55839881	55841259	LTR|ERV1|LTR12C	-	chr18	55839801	55840126	STRG.262410.1	-	55839801	55840126	0.946237
testis_male_adult_37_years	chrX	150503458	150503459	150503458	+	RAMPAGE_only	8	9	10	0.446959	3.169925	chrX	150503464	150503628	SINE|MIR|MIRc	+	chrX	150509324	150514169	MAMLD1|ENST00000464149.1	+	150509324,150512003	150510046,150514169	0.900000
testis_male_adult_37_years	chr11	116073183	116073213	116073188	-	RAMPAGE_only	28	31	95	4.246110	5.425451	chr11	116073145	116073364	SINE|MIR|MIRc	+	chr11	116067015	116067254	STRG.194477.3	-	116067015	116067254	0.652632
testis_male_adult_37_years	chr6	28335913	28335965	28335913	-	High_confidence	8	8	38	1.698444	4.885129	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.868421
testis_male_adult_37_years	chr9	70175863	70175872	70175871	-	RAMPAGE_only	20	20	53	2.368882	5.336319	chr9	70175682	70176053	LTR|ERVL-MaLR|MLT1B	-	chr9	70167547	70179819	STRG.161809.3	-	70167547	70179819	0.886792
testis_male_adult_37_years	chr21	21746960	21746961	21746960	+	High_confidence	14	14	14	0.625742	2.835238	chr21	21746768	21747069	LTR|ERVL-MaLR|THE1A	+	chr21	21746972	21797415	LINC01425|ENST00000425979.5	+	21746972,21784972,21786298,21797178	21747043,21785053,21786391,21797415	0.928571
testis_male_adult_37_years	chr2	232764441	232764474	232764443	+	High_confidence	41	55	178	7.955869	6.310069	chr2	232764038	232764765	LINE|CR1|L3	+	chr2	232764443	232790850	GIGYF2|ENST00000445650.5	+	232764443,232765891,232787149,232790697	232764610,232765979,232787329,232790850	0.910112
testis_male_adult_37_years	chr20	37744608	37744641	37744620	+	High_confidence	10	10	54	2.413578	5.391746	chr20	37744532	37744694	DNA|hAT-Charlie|MER117	+	chr20	37744644	37872129	CTNNBL1|ENST00000373473.5	+	37744644,37746467,37765196,37767952,37777344,37777653,37779186,37802866,37840101,37842338,37859898,37860271,37871924	37744713,37746647,37765290,37768044,37777417,37777712,37779335,37803048,37840199,37842419,37860036,37860344,37872129	0.740741
testis_male_adult_37_years	chr16	49738453	49738473	49738453	-	RAMPAGE_only	11	11	22	0.983310	3.884184	chr16	49738353	49738507	SINE|MIR|MIRc	+	chr16	49490950	49731464	STRG.244935.4	-	49490950,49523623,49525362,49626169,49635659,49730770,49731297	49491304,49523739,49525494,49626254,49638874,49730971,49731464	0.818182
testis_male_adult_37_years	chr16	2204624	2204649	2204648	+	High_confidence	7	7	18	0.804526	3.969816	chr16	2204526	2204705	LINE|L2|L2	-	chr16	2204646	2208244	MLST8|ENST00000569457.5	+	2204646,2205419,2206030,2206357,2206496,2207034,2207192,2208209	2204682,2205512,2206214,2206409,2206659,2207110,2207345,2208244	0.722222
testis_male_adult_37_years	chr1	25208028	25208056	25208051	+	High_confidence	5	5	16	0.715134	3.625000	chr1	25208028	25208209	LTR|ERVL-MaLR|MLT1L	+	chr1	25208138	25209437	AL031432.1|ENST00000455902.2	+	25208138,25208533	25208222,25209437	0.687500
testis_male_adult_37_years	chr6	44955430	44955511	44955469	-	High_confidence	5	5	33	1.474964	4.825164	chr6	44955284	44955624	LINE|L1|L1PBa	+	chr6	44829766	44955510	SUPT3H|ENST00000371458.1	-	44829766,44932652,44953309,44954494,44955224	44829876,44932763,44953417,44954607,44955510	0.848485
testis_male_adult_37_years	chr3	137714087	137714123	137714090	-	High_confidence	105	112	308	13.766335	5.588572	chr3	137713682	137715059	LTR|ERV1|LTR12C	-	chr3	137690804	137714131	STRG.62108.3	-	137690804,137713713	137691966,137714131	0.918831
testis_male_adult_37_years	chr19	53379135	53379152	53379138	+	High_confidence	8	8	31	1.385573	4.413716	chr19	53379115	53379414	SINE|Alu|AluSx3	-	chr19	53379380	53381049	ZNF525|ENST00000600148.1	+	53379380,53380721	53379474,53381049	0.838710
testis_male_adult_37_years	chr1	247879440	247879451	247879450	-	High_confidence	12	13	36	1.609052	4.194388	chr1	247879033	247880115	LINE|L2|L2a	+	chr1	247875603	247879433	STRG.22511.1	-	247875603,247879294	247876530,247879433	0.888889
testis_male_adult_37_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	16	16	16	0.715134	2.827820	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	1.000000
testis_male_adult_37_years	chr7	101217580	101217595	101217594	-	High_confidence	4	4	9	0.402263	3.000000	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.888889
testis_male_adult_37_years	chrX	109760736	109760741	109760736	-	RAMPAGE_only	4	5	11	0.491655	3.095795	chrX	109760494	109761733	LINE|L1|L1MCa	+	chrX	109641329	109733403	ACSL4|NM_001318509.1	-	109641329,109659353,109661530,109663210,109665419,109668100,109669033,109674401,109677987,109678264,109680997,109681265,109682718,109683135,109696143,109733138	109644186,109659511,109661645,109663402,109665494,109668273,109669173,109674473,109678111,109678415,109681136,109681375,109682896,109683666,109696196,109733403	0.545455
testis_male_adult_37_years	chr11	94974824	94974825	94974824	-	RAMPAGE_only	33	34	46	2.056011	5.033184	chr11	94974577	94975336	LINE|L2|L2a	+	chr11	94962621	94973612	CWC15|NM_016403.3	-	94962621,94966294,94969988,94970976,94971374,94972054,94973497	94963514,94966413,94970096,94971065,94971487,94972193,94973612	0.956522
testis_male_adult_37_years	chr8	104590683	104590733	104590683	+	High_confidence	8	8	24	1.072701	4.262692	chr8	104590328	104590768	LTR|ERV1|LTR12F	-	chr8	104590732	104895717	ZFPM2|ENST00000521923.5	+	104590732,104714845,104827356,104833324,104895406	104590768,104714975,104827478,104833445,104895717	0.583333
testis_male_adult_37_years	chr22	47031257	47031264	47031257	+	RAMPAGE_only	2	2	7	0.312871	2.521641	chr22	47031298	47031425	LINE|L2|L2b	+	chr22	46773926	47175699	TBC1D22A|NM_001284305.1	+	46773926,46792519,46793500,46797443,46878652,46891265,46894783,46912073,46974289,46997633,47037070,47111507,47173497	46774235,46792576,46793841,46797620,46878723,46891394,46894846,46912188,46974399,46997709,47037198,47111603,47175699	0.714286
testis_male_adult_37_years	chr9	68975783	68975809	68975783	-	High_confidence	4	5	8	0.357567	3.000000	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.750000
testis_male_adult_37_years	chr10	35250550	35250571	35250550	+	RAMPAGE_only	2	2	7	0.312871	2.584963	chr10	35250433	35250615	DNA|hAT-Charlie|MER5A	+	chr10	35247048	35530036	CCNY|ENST00000493157.6	+	35247048,35248108,35250521,35434112,35455356,35483403,35501500,35516522,35525963,35529972	35247130,35248211,35250626,35434220,35455463,35483478,35501535,35516623,35525999,35530036	0.857143
testis_male_adult_37_years	chr10	69537603	69537634	69537603	-	High_confidence	2	2	10	0.446959	2.503258	chr10	69537416	69537769	LTR|ERVL-MaLR|MLT1C	-	chr10	69536479	69537651	STRG.175789.2	-	69536479,69537456	69536724,69537651	0.500000
testis_male_adult_37_years	chr15	60301274	60301279	60301278	+	High_confidence	9	12	28	1.251485	4.162295	chr15	60301133	60301417	LTR|ERVL-MaLR|MLT1K	-	chr15	60301267	60315472	STRG.236411.1	+	60301267,60305882,60306749,60307463,60309157,60315415	60301392,60305955,60306875,60307649,60309435,60315472	0.892857
testis_male_adult_37_years	chr2	228689630	228689671	228689652	+	High_confidence	10	10	50	2.234795	4.971653	chr2	228689434	228689685	SINE|MIR|MIRb	-	chr2	228689641	228723068	STRG.45854.1	+	228689641,228710551,228714557,228716643,228722792	228689866,228710642,228714645,228716727,228723068	0.880000
testis_male_adult_37_years	chr15	50582454	50582464	50582463	-	High_confidence	4	4	8	0.357567	2.500000	chr15	50582258	50582553	LINE|L1|L1MEd	-	chr15	50574958	50582464	TRPM7|ENST00000558444.5	-	50574958,50575723,50575868,50578558,50580873,50582434	50575135,50575789,50575919,50578664,50580908,50582464	0.875000
testis_male_adult_37_years	chr1	156337678	156337681	156337680	-	High_confidence	4	8	8	0.357567	2.750000	chr1	156337637	156337783	SINE|MIR|MIRb	-	chr1	156318920	156338229	CCT3|ENST00000496684.6	-	156318920,156320838,156324971,156333546,156334712,156334867,156335826,156338153	156319017,156321025,156325086,156333643,156334775,156334918,156335888,156338229	1.000000
testis_male_adult_37_years	chr8	25840128	25840139	25840128	-	High_confidence	3	3	7	0.312871	2.584963	chr8	25839842	25840132	LINE|L2|L2c	+	chr8	25834128	25840135	AC090103.1|ENST00000520386.1	-	25834128,25839964	25834442,25840135	0.857143
testis_male_adult_37_years	chr20	20220109	20220142	20220122	+	High_confidence	22	22	67	2.994625	5.554676	chr20	20219794	20220708	LTR|ERVL|MER21C	+	chr20	20220128	20225322	CFAP61|ENST00000493330.5	+	20220128,20221060,20221731,20225288	20220252,20221234,20222008,20225322	0.507463
testis_male_adult_37_years	chr6	179296	179314	179296	+	RAMPAGE_only	4	4	8	0.357567	2.807355	chr6	178575	179332	LTR|ERV1|LTR12	-	chr6	182145	187701	STRG.106395.2	+	182145	187701	0.875000
testis_male_adult_37_years	chr9	131167433	131167467	131167452	-	High_confidence	7	9	38	1.698444	3.945808	chr9	131167152	131167669	LINE|L1|L1ME3B	-	chr9	131159377	131167465	AL157938.2|ENST00000417798.2	-	131159377,131163282,131167077	131159463,131163333,131167465	0.815789
testis_male_adult_37_years	chr13	110822209	110822227	110822226	+	High_confidence	3	4	8	0.357567	3.000000	chr13	110820975	110822522	LTR|ERV1|LTR12C	+	chr13	110822117	110839110	STRG.221293.1	+	110822117,110824862,110838215	110822547,110826492,110839110	1.000000
testis_male_adult_37_years	chr12	18324164	18324186	18324164	+	High_confidence	5	5	10	0.446959	2.721928	chr12	18323938	18324230	SINE|Alu|AluYe5	+	chr12	18324266	18346778	STRG.199465.1	+	18324266,18325034,18338425,18343326,18346640	18324462,18325098,18338548,18343360,18346778	0.900000
testis_male_adult_37_years	chr20	32833126	32833162	32833161	+	RAMPAGE_only	14	14	34	1.519660	4.597276	chr20	32833031	32833218	SINE|Alu|AluSc8	+	chr20	32820190	32854700	STRG.274999.2	+	32820190,32825924,32833716,32836633,32839734,32846617,32848671	32820363,32826048,32833862,32836841,32839856,32846770,32854700	0.705882
testis_male_adult_37_years	chr12	87330829	87330846	87330845	-	High_confidence	23	23	45	2.011315	4.612588	chr12	87330784	87330936	SINE|Alu|AluY	+	chr12	87042345	87330929	STRG.206790.1	-	87042345,87187398,87330729	87043164,87187485,87330929	0.622222
testis_male_adult_37_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	10	10	12	0.536351	3.418296	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.833333
testis_male_adult_37_years	chr11	17282843	17282905	17282904	+	RAMPAGE_only	2	3	11	0.491655	3.277613	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.636364
testis_male_adult_37_years	chr2	190090382	190090383	190090382	+	High_confidence	80	80	103	4.603677	4.991850	chr2	190090247	190090528	LTR|ERVL-MaLR|MLT1F	+	chr2	190089540	190199827	C2orf88|ENST00000490033.5	+	190089540,190090896,190095518,190163935,190199696	190089608,190090970,190095602,190164060,190199827	0.504854
testis_male_adult_37_years	chr2	180692008	180692009	180692008	+	High_confidence	188	188	240	10.727014	4.865236	chr2	180691204	180692425	LTR|ERV1|LTR12C	+	chr2	180691993	180724709	STRG.40899.1	+	180691993,180724595	180692441,180724709	0.979167
testis_male_adult_37_years	chr2	169840447	169840463	169840458	+	RAMPAGE_only	8	8	18	0.804526	3.616875	chr2	169840412	169841348	LTR|ERVL-MaLR|MLT1A1-int	-	chr2	169827507	170084131	UBR3|NM_172070.3	+	169827507,169872235,169875790,169877493,169878524,169891164,169895180,169896506,169905113,169906030,169914059,169923928,169924083,169925618,169926691,169926837,169927319,169928726,169932911,169942492,169946287,169947541,169949604,169958437,169986644,169994322,170001303,170006989,170008803,170015280,170029345,170040881,170055459,170061078,170061317,170073427,170079813,170080544,170081725	169828052,169872375,169875949,169877637,169878574,169891231,169895311,169896735,169905293,169906164,169914146,169923994,169924173,169925747,169926744,169926971,169927405,169928868,169933008,169942634,169946392,169947715,169950065,169958526,169986794,169994456,170001414,170007190,170008940,170015366,170029448,170040985,170055584,170061186,170061443,170073607,170080023,170080684,170084131	0.666667
testis_male_adult_37_years	chr18	55665242	55665277	55665244	+	High_confidence	12	20	48	2.145403	4.209148	chr18	55665162	55665592	LTR|ERV1|LTR12C	+	chr18	55664309	55666037	STRG.262603.1	+	55664309	55666037	0.958333
testis_male_adult_37_years	chr12	10115375	10115392	10115391	+	High_confidence	4	4	10	0.446959	3.169925	chr12	10115146	10115443	SINE|Alu|AluY	+	chr12	10115347	10115703	STRG.198381.1	+	10115347	10115703	0.700000
testis_male_adult_37_years	chr4	86715021	86715022	86715021	+	RAMPAGE_only	50	52	56	2.502970	5.353909	chr4	86714736	86715062	LINE|L2|L2c	-	chr4	86635251	86815149	PTPN13|ENST00000511467.1	+	86635251,86672364,86686709,86689004,86693586,86701240,86716529,86717023,86722211,86732399,86732591,86734302,86734736,86735593,86741633,86744965,86750469,86751026,86753008,86758259,86758677,86758941,86762726,86764592,86765394,86766431,86767816,86769768,86770100,86771170,86772777,86774372,86775170,86775441,86780401,86782200,86784464,86785230,86785847,86796873,86799100,86803708,86805278,86807559,86809768,86811045,86814455	86635371,86672543,86686775,86689190,86693674,86701801,86716625,86717117,86722434,86732474,86732766,86734456,86734875,86735746,86741816,86745128,86750887,86751124,86753065,86758349,86758785,86759073,86763190,86764739,86765488,86766517,86767976,86769983,86770199,86771535,86772958,86774531,86775342,86775652,86780472,86782262,86784558,86785368,86785936,86796929,86799204,86803857,86805369,86807897,86809984,86811108,86815149	0.892857
testis_male_adult_37_years	chr17	64518819	64518822	64518821	+	RAMPAGE_only	5	8	12	0.536351	2.751629	chr17	64518684	64518980	SINE|Alu|AluSq	-	chr17	64507010	64525834	STRG.256479.7	+	64507010,64510172,64514247,64516722,64521401,64522701,64525769	64508720,64510280,64514358,64519436,64521527,64522895,64525834	1.000000
testis_male_adult_37_years	chr14	102234601	102234631	102234614	-	High_confidence	14	15	40	1.787836	5.090033	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102229432	102235063	MOK|ENST00000522537.5	-	102229432,102232534,102233687,102234956	102229657,102232708,102233789,102235063	0.700000
testis_male_adult_37_years	chr2	234410367	234410368	234410367	+	High_confidence	4	4	7	0.312871	2.521641	chr2	234410414	234410514	SINE|MIR|MIRb	+	chr2	234410374	234427015	STRG.46481.1	+	234410374,234426794	234410474,234427015	0.571429
testis_male_adult_37_years	chr11	58578102	58578204	58578102	-	High_confidence	31	34	172	7.687693	6.281251	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58527038	58578166	STRG.187605.5	-	58527038,58528042,58530406,58549785,58549972,58551064,58554840,58564154,58570555,58573514	58527723,58528191,58530524,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.976744
testis_male_adult_37_years	chr1	118054003	118054013	118054003	-	RAMPAGE_only	3	3	7	0.312871	2.521641	chr1	118053818	118053997	LINE|L1|L1ME3A	-	chr1	117953863	118185223	SPAG17|ENST00000336338.9	-	117953863,117963798,117966608,117970055,117971862,117973424,117981269,117983810,117984682,117987833,117988104,117990860,117991414,117992465,117994405,117996369,117996597,118005413,118008043,118012227,118015964,118023303,118025237,118028273,118031691,118036769,118039291,118040729,118041802,118054001,118055732,118066744,118073853,118074538,118081100,118081414,118085921,118086670,118086870,118091605,118091929,118093155,118097669,118099605,118101739,118115309,118150542,118151228,118185070	117954049,117963938,117966753,117970116,117972047,117973561,117981401,117983913,117984782,117987881,117988204,117990906,117991528,117992648,117994530,117996500,117996743,118005602,118008198,118012372,118016182,118023463,118025416,118028394,118031867,118036883,118039444,118040841,118042042,118054093,118055914,118066899,118073967,118074600,118081319,118081642,118086072,118086784,118087008,118091718,118092002,118093317,118097851,118099800,118101926,118115441,118150629,118151369,118185223	1.000000
testis_male_adult_37_years	chr3	51248770	51248798	51248784	+	RAMPAGE_only	3	3	13	0.581047	3.238901	chr3	51248293	51249496	Retroposon|SVA|SVA_D	+	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.769231
testis_male_adult_37_years	chr10	27983064	27983100	27983067	-	High_confidence	139	142	840	37.544549	6.270883	chr10	27982876	27983540	LTR|ERVL|LTR50	+	chr10	27812163	27983106	ARMC4|NM_001312689.1	-	27812163,27860624,27862433,27907662,27935009,27936725,27939896,27940562,27944221,27944815,27961567,27968922,27971107,27981465,27982928	27812625,27860846,27862622,27907777,27935252,27936880,27940007,27940805,27944431,27944962,27961715,27969018,27971313,27981582,27983106	0.920238
testis_male_adult_37_years	chr13	79505325	79505366	79505365	+	High_confidence	8	8	39	1.743140	4.199132	chr13	79505349	79505642	SINE|Alu|AluJr	+	chr13	79504372	79520975	STRG.217754.6	+	79504372,79506167,79520809	79505475,79506219,79520975	0.769231
testis_male_adult_37_years	chr10	46048179	46048180	46048179	-	High_confidence	8	9	12	0.536351	3.418296	chr10	46047743	46048244	LTR|ERVL-MaLR|MLT1N2	+	chr10	46033384	46048207	STRG.173827.1	-	46033384,46038965,46039985,46046234,46047873	46033551,46039071,46040091,46046379,46048207	1.000000
testis_male_adult_37_years	chr14	81623082	81623083	81623082	-	High_confidence	188	190	200	8.939178	6.015581	chr14	81622661	81624332	LTR|ERV1|LTR12C	-	chr14	81605346	81623061	LINC01467|NR_110074.1	-	81605346,81607131,81622652	81605554,81607701,81623061	0.895000
testis_male_adult_37_years	chr20	57349256	57349257	57349256	+	High_confidence	167	167	172	7.687693	6.258629	chr20	57348213	57349645	LTR|ERV1|LTR12C	+	chr20	57349046	57356512	STRG.277437.12	+	57349046,57351288,57354031,57354711,57356445	57349609,57351422,57354128,57354816,57356512	0.720930
testis_male_adult_37_years	chr3	169812943	169812974	169812973	+	RAMPAGE_only	2	2	8	0.357567	3.000000	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169821921	169837773	LRRIQ4|NM_001080460.1	+	169821921,169828758,169830491,169832986,169837478	169822941,169828932,169830630,169833183,169837773	1.000000
testis_male_adult_37_years	chr10	72008810	72008840	72008810	+	RAMPAGE_only	7	7	22	0.983310	3.821928	chr10	72008852	72009066	DNA|hAT|MamRep38	+	chr10	71970553	72013564	STRG.175911.1	+	71970553,72005735,72007171,72011555	71970714,72005982,72011468,72013564	0.818182
testis_male_adult_37_years	chr5	134610991	134611008	134610991	-	RAMPAGE_only	2	3	7	0.312871	2.521641	chr5	134610883	134611163	SINE|Alu|AluJr4	-	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.857143
testis_male_adult_37_years	chr10	69537568	69537569	69537568	-	High_confidence	34	34	35	1.564356	4.076741	chr10	69537416	69537769	LTR|ERVL-MaLR|MLT1C	-	chr10	69536479	69537651	STRG.175789.2	-	69536479,69537456	69536724,69537651	0.742857
testis_male_adult_37_years	chr16	15577122	15577181	15577122	+	High_confidence	20	20	50	2.234795	4.874615	chr16	15576751	15577391	LTR|ERV1|LTR9D	-	chr16	15577133	15587357	C16orf45|ENST00000565913.1	+	15577133,15581216,15583155,15586716	15577228,15581331,15583238,15587357	0.880000
testis_male_adult_37_years	chr10	103395840	103395886	103395885	-	High_confidence	3	3	10	0.446959	2.921928	chr10	103395615	103395992	LINE|RTE-X|L4_C_Mam	+	chr10	103389049	103396074	ATP5MD|ENST00000369811.5	-	103389049,103392190,103392370,103395745	103389166,103392283,103392466,103396074	1.000000
testis_male_adult_37_years	chr10	101237595	101237638	101237625	+	High_confidence	23	23	67	2.994625	5.089611	chr10	101237625	101237761	SINE|MIR|MIRc	+	chr10	101237427	101238848	STRG.179619.1	+	101237427,101237938,101238230	101237710,101238047,101238848	0.865672
testis_male_adult_37_years	chr9	122300317	122300318	122300317	+	High_confidence	57	57	71	3.173408	4.299085	chr9	122300366	122300525	SINE|MIR|MIRb	+	chr9	122299921	122313330	STRG.167697.13	+	122299921,122313226	122305877,122313330	0.732394
testis_male_adult_37_years	chr20	50267474	50267478	50267477	+	High_confidence	4	5	8	0.357567	2.807355	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.750000
testis_male_adult_37_years	chr9	119869757	119869758	119869757	-	High_confidence	114	114	118	5.274115	4.795935	chr9	119869342	119870847	LTR|ERV1|LTR12C	-	chr9	119866792	119869832	STRG.167401.1	-	119866792	119869832	0.957627
testis_male_adult_37_years	chr5	21341273	21341349	21341348	-	High_confidence	16	17	98	4.380197	5.560626	chr5	21341224	21342284	LTR|ERV1|LTR12E	+	chr5	21181788	21341625	STRG.91137.1	-	21181788,21189976,21271714,21329565,21341184	21181950,21190044,21271779,21329630,21341625	0.520408
testis_male_adult_37_years	chr1	51846740	51846741	51846740	-	RAMPAGE_only	113	113	137	6.123337	5.622252	chr1	51846449	51847931	LTR|ERV1|LTR12C	-	chr1	51825296	51840454	STRG.5410.7	-	51825296,51827795,51834016,51836130,51836368,51837486	51825382,51827869,51834170,51836212,51836438,51840454	0.773723
testis_male_adult_37_years	chr15	82546441	82546469	82546441	-	RAMPAGE_only	2	2	8	0.357567	2.521641	chr15	82546117	82546394	SINE|Alu|AluSx1	-	chr15	82543200	82556536	CPEB1|ENST00000618698.4	-	82543200,82546440,82547142,82549459,82552479,82553466,82553877,82555869	82544702,82546521,82547237,82549658,82552616,82553556,82553991,82556536	0.625000
testis_male_adult_37_years	chr17	70129017	70129027	70129026	-	High_confidence	5	5	11	0.491655	3.121928	chr17	70128761	70129144	LTR|ERV1|MER48	-	chr17	70112841	70129013	STRG.256919.2	-	70112841,70123838,70125160,70128068,70128642	70113796,70124825,70125262,70128157,70129013	0.636364
testis_male_adult_37_years	chr14	95136800	95136819	95136800	-	High_confidence	10	10	19	0.849222	3.787144	chr14	95136751	95136965	LTR|ERVL-MaLR|MLT1L	+	chr14	95086227	95136810	DICER1|NM_001271282.2	-	95086227,95091033,95091202,95093887,95095824,95099779,95103345,95105070,95105677,95106040,95107607,95107879,95108323,95111316,95112171,95113091,95115666,95116452,95117621,95124195,95126579,95129471,95130057,95131508,95132514,95133314,95136622	95090663,95091109,95091365,95094156,95096713,95099935,95104126,95105246,95105783,95106223,95107761,95108093,95108503,95111456,95112247,95113224,95115821,95116695,95117754,95124668,95126748,95129632,95130192,95131639,95132677,95133503,95136810	0.736842
testis_male_adult_37_years	chr3	32703650	32703666	32703650	+	High_confidence	6	6	17	0.759830	3.875000	chr3	32703312	32703822	DNA|TcMar-Tigger|MER44B	-	chr3	32703790	32713349	CNOT10|ENST00000485136.5	+	32703790,32704810,32708669,32713226	32703962,32704972,32708820,32713349	0.823529
testis_male_adult_37_years	chr5	61735677	61735703	61735677	-	High_confidence	5	5	19	0.849222	3.725481	chr5	61735667	61735848	DNA|hAT-Charlie|MER5A	+	chr5	61735137	61735669	C5orf64-AS1|ENST00000512882.2	-	61735137,61735624	61735526,61735669	0.578947
testis_male_adult_37_years	chr5	112981046	112981066	112981046	+	RAMPAGE_only	3	3	11	0.491655	2.921928	chr5	112981029	112981308	SINE|Alu|AluJr4	-	chr5	112976812	112984651	DCP2|ENST00000504961.1	+	112976812,112983973	112976986,112984651	0.818182
testis_male_adult_37_years	chr12	126094111	126094143	126094126	+	RAMPAGE_only	3	3	12	0.536351	3.459432	chr12	126094078	126094196	LTR|ERVL-MaLR|MLT1J2	-	chr12	126095991	126103935	LINC02359|ENST00000545642.1	+	126095991,126096239,126100688,126102214,126103744	126096100,126096366,126100805,126102313,126103935	0.583333
testis_male_adult_37_years	chr1	147173163	147173242	147173225	+	High_confidence	4	5	34	1.519660	4.862576	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.882353
testis_male_adult_37_years	chr2	129329671	129329672	129329671	+	High_confidence	46	47	53	2.368882	5.010181	chr2	129329362	129329871	LTR|ERV1|LTR12F	+	chr2	129329657	129331285	STRG.35981.1	+	129329657	129331285	0.716981
testis_male_adult_37_years	chr1	180095146	180095170	180095150	+	High_confidence	36	36	92	4.112022	5.159887	chr1	180095060	180095230	SINE|tRNA|LFSINE_Vert	-	chr1	180095146	180111031	CEP350|ENST00000496440.1	+	180095146,180095522,180096037,180098862,180110996	180095198,180095930,180096184,180098985,180111031	0.967391
testis_male_adult_37_years	chr1	112699331	112699363	112699362	+	High_confidence	5	5	10	0.446959	2.725481	chr1	112699307	112699413	DNA|hAT-Charlie|MER5A	-	chr1	112699623	112700722	MOV10|ENST00000495374.5	+	112699623,112699893,112700218,112700415	112699810,112699982,112700340,112700722	0.500000
testis_male_adult_37_years	chr13	54800128	54800172	54800155	+	RAMPAGE_only	2	3	9	0.402263	2.725481	chr13	54799141	54800235	LTR|ERV1|LTR12E	-	chr13	54798936	54801623	STRG.215200.1	+	54798936,54800654	54800259,54801623	0.666667
testis_male_adult_37_years	chr2	174570645	174570646	174570645	-	High_confidence	13	13	16	0.715134	3.240224	chr2	174570549	174570714	DNA|hAT-Charlie|MER5B	+	chr2	174567076	174570646	WIPF1|ENST00000467149.1	-	174567076,174567860,174568606,174570438	174567183,174568073,174568823,174570646	0.812500
testis_male_adult_37_years	chr14	40629902	40629970	40629902	-	High_confidence	9	9	47	2.100707	4.819305	chr14	40629527	40630203	LTR|ERV1|LTR12C	-	chr14	40611905	40629955	STRG.224625.1	-	40611905,40629319	40612558,40629955	0.914894
testis_male_adult_37_years	chr19	17576549	17576567	17576549	+	High_confidence	2	3	9	0.402263	3.000000	chr19	17576083	17576557	LINE|L2|L2b	-	chr19	17577074	17580870	COLGALT1|ENST00000597075.1	+	17577074,17577360,17577956,17579481,17580698	17577271,17577467,17578089,17579609,17580870	0.777778
testis_male_adult_37_years	chr1	232314261	232314264	232314261	-	High_confidence	40	40	73	3.262800	4.870116	chr1	232313838	232314457	LTR|ERV1|LTR12_	-	chr1	232313793	232314302	STRG.20470.1	-	232313793	232314302	0.972603
testis_male_adult_37_years	chr1	102660707	102660726	102660725	-	High_confidence	28	30	46	2.056011	4.030551	chr1	102660577	102660940	LTR|ERV1|LTR27E	+	chr1	102658498	102660500	STRG.10513.1	-	102658498	102660500	0.717391
testis_male_adult_37_years	chr7	148572170	148572197	148572170	-	RAMPAGE_only	2	2	9	0.402263	2.750000	chr7	148571915	148572391	LTR|ERV1|LTR9	+	chr7	148567133	148625562	STRG.140232.1	-	148567133,148625358	148568278,148625562	0.666667
testis_male_adult_37_years	chr3	45307661	45307662	45307661	+	High_confidence	349	351	389	17.386702	5.535916	chr3	45306485	45308078	LTR|ERV1|LTR12C	+	chr3	45307603	45311211	STRG.53126.1	+	45307603,45309757	45308475,45311211	0.997429
testis_male_adult_37_years	chr2	215004765	215004773	215004765	+	RAMPAGE_only	5	6	11	0.491655	3.321928	chr2	215004703	215004828	SINE|MIR|MIRb	+	chr2	215021997	215042256	AC072062.1|ENST00000437897.7	+	215021997,215022891,215030152,215035769,215038942,215042239	215022723,215023020,215030249,215035833,215039041,215042256	0.545455
testis_male_adult_37_years	chr8	42716533	42716535	42716534	-	High_confidence	16	31	35	1.564356	4.793345	chr8	42716410	42716812	LTR|ERV1|MER66B	-	chr8	42715991	42716558	STRG.146059.1	-	42715991	42716558	0.571429
testis_male_adult_37_years	chr14	33227638	33227661	33227638	-	High_confidence	47	47	150	6.704384	5.533889	chr14	33227412	33227768	LTR|ERVL-MaLR|MLT1A0	-	chr14	33221915	33227653	STRG.223698.1	-	33221915,33227489	33222279,33227653	0.906667
testis_male_adult_37_years	chr5	32403148	32403167	32403148	-	RAMPAGE_only	8	8	25	1.117397	4.168296	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.960000
testis_male_adult_37_years	chr1	192986913	192986941	192986920	-	RAMPAGE_only	4	4	21	0.938614	3.484184	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192955637	192988622	STRG.16958.4	-	192955637,192986717	192957422,192988622	0.809524
testis_male_adult_37_years	chr5	64766232	64766270	64766257	-	RAMPAGE_only	14	17	52	2.324186	5.354286	chr5	64766000	64766663	LINE|L2|L2b	+	chr5	64727670	64768619	SREK1IP1|ENST00000495198.6	-	64727670,64741056,64754314,64768504	64728179,64741200,64754362,64768619	0.673077
testis_male_adult_37_years	chr5	25199031	25199032	25199031	-	High_confidence	37	38	41	1.832532	4.033783	chr5	25198616	25200586	LTR|ERV1|LTR12C	-	chr5	25198600	25199025	STRG.91301.1	-	25198600	25199025	0.951220
testis_male_adult_37_years	chr18	7362006	7362041	7362006	+	High_confidence	75	96	281	12.559546	5.231963	chr18	7360496	7362489	LTR|ERV1|LTR12C	+	chr18	7362016	7363407	STRG.259247.1	+	7362016	7363407	0.975089
testis_male_adult_37_years	chr4	62165539	62165548	62165539	-	High_confidence	37	39	65	2.905233	4.724849	chr4	62165481	62166601	LTR|ERVL|HERVL-int	+	chr4	62071751	62165545	ADGRL3-AS1|ENST00000504135.5	-	62071751,62072752,62118061,62120227,62136665,62155941,62157322,62165513	62071779,62072877,62118102,62120289,62136756,62156041,62157385,62165545	0.984615
testis_male_adult_37_years	chr7	55862747	55862765	55862760	-	High_confidence	180	200	468	20.917677	6.529066	chr7	55862516	55862760	SINE|MIR|MIRb	-	chr7	55844536	55862755	SEPT14|ENST00000477628.1	-	55844536,55846516,55850786,55861942,55862687	55844718,55846637,55850906,55862011,55862755	0.709402
testis_male_adult_37_years	chr5	96934277	96934285	96934277	+	RAMPAGE_only	3	3	12	0.536351	3.084963	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.916667
testis_male_adult_37_years	chr2	181954410	181954433	181954410	+	High_confidence	5	5	12	0.536351	3.459432	chr2	181954369	181954454	DNA|hAT-Charlie|MER119	+	chr2	181954491	182117516	PPP1R1C|ENST00000486067.5	+	181954491,181962133,181975218,181987838,182061441,182063730,182117206	181954634,181962196,181975264,181987899,182061479,182063791,182117516	0.750000
testis_male_adult_37_years	chr2	78542128	78542159	78542158	+	RAMPAGE_only	11	11	34	1.519660	4.407438	chr2	78541256	78543178	LINE|L1|L1PBa1	+	chr2	78545530	78566088	LOC105374820|NR_136312.1	+	78545530,78552619,78561855,78565871	78545597,78552700,78561945,78566088	0.882353
testis_male_adult_37_years	chr4	24659862	24659919	24659899	+	High_confidence	54	56	161	7.196039	6.316883	chr4	24659710	24660009	LTR|ERVL-MaLR|MLT1H	+	chr4	24659855	24671568	STRG.72776.2	+	24659855	24671568	0.993789
testis_male_adult_37_years	chr13	88540723	88540726	88540723	-	High_confidence	5	5	10	0.446959	2.947703	chr13	88539482	88541110	LTR|ERVL-MaLR|MSTC-int	+	chr13	88540070	88540735	STRG.219053.1	-	88540070	88540735	0.700000
testis_male_adult_37_years	chr4	148942407	148942415	148942407	-	High_confidence	2	2	9	0.402263	2.947703	chr4	148942388	148942545	DNA|hAT-Charlie|MER5A1	-	chr4	148940940	148942378	AC002460.1|ENST00000504394.1	-	148940940,148941656,148942341	148941087,148941842,148942378	0.777778
testis_male_adult_37_years	chr7	99555015	99555047	99555046	-	RAMPAGE_only	5	5	13	0.581047	3.022055	chr7	99554984	99555027	LTR|ERVL|ERVL-B4-int	-	chr7	99546299	99552134	FAM200A|NM_145111.3	-	99546299,99551853	99548506,99552134	0.692308
testis_male_adult_37_years	chr17	15106130	15106149	15106130	-	High_confidence	8	8	17	0.759830	3.750000	chr17	15105958	15106330	LTR|ERVL-MaLR|MLT1A0	-	chr17	15104984	15106187	CDRT8|NR_103559.1	-	15104984,15106027	15105543,15106187	0.882353
testis_male_adult_37_years	chr8	136793864	136793910	136793864	+	High_confidence	5	9	39	1.743140	4.491220	chr8	136793070	136794354	LTR|ERV1|LTR12C	-	chr8	136793747	136961982	STRG.155566.4	+	136793747,136797273,136896984,136961739	136794380,136797370,136897078,136961982	0.948718
testis_male_adult_37_years	chr2	25780278	25780320	25780278	-	High_confidence	6	6	19	0.849222	3.932138	chr2	25780217	25780265	SINE|Alu|AluJo	-	chr2	25741924	25780309	ASXL2|ENST00000404843.5	-	25741924,25743827,25749695,25753533,25756017,25759481,25767582,25768741,25771439,25780248	25743056,25744476,25750413,25753639,25756114,25759645,25767726,25768868,25771540,25780309	0.947368
testis_male_adult_37_years	chr16	58810751	58810795	58810794	-	High_confidence	6	8	50	2.234795	4.864610	chr16	58810491	58810882	DNA|TcMar-Tigger|Tigger3a	+	chr16	58809498	58809838	STRG.246729.1	-	58809498	58809838	0.820000
testis_male_adult_37_years	chr5	160199150	160199156	160199150	+	High_confidence	10	10	19	0.849222	3.932138	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.947368
testis_male_adult_37_years	chr10	98202937	98202991	98202953	+	RAMPAGE_only	16	16	62	2.771145	4.760017	chr10	98202872	98203421	LINE|L1|L1MC4	+	chr10	98199589	98244894	STRG.178511.7	+	98199589,98208100,98231511,98234445,98235424,98236023,98244090	98205656,98209899,98231687,98234516,98235520,98236164,98244894	1.000000
testis_male_adult_37_years	chr17	2667103	2667196	2667195	+	High_confidence	18	18	71	3.173408	5.301313	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.957746
testis_male_adult_37_years	chr5	155115731	155115732	155115731	+	High_confidence	36	37	45	2.011315	4.644107	chr5	155114661	155116002	LTR|ERV1|LTR12C	+	chr5	155115551	155116224	STRG.103781.1	+	155115551	155116224	0.844444
testis_male_adult_37_years	chr7	117279377	117279396	117279385	-	RAMPAGE_only	12	16	35	1.564356	4.433154	chr7	117279317	117279769	LTR|ERVL-MaLR|MLT1O	+	chr7	117276494	117297871	STRG.137028.1	-	117276494,117297611	117278384,117297871	1.000000
testis_male_adult_37_years	chr5	89003952	89004003	89003952	+	High_confidence	9	9	60	2.681753	5.573557	chr5	89002747	89004166	LTR|ERV1|LTR12C	-	chr5	89003511	89168668	STRG.96315.5	+	89003511,89094958,89150532,89168249	89004184,89095029,89150595,89168668	0.616667
testis_male_adult_37_years	chr8	80485592	80485617	80485592	+	High_confidence	6	6	21	0.938614	3.921928	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.809524
testis_male_adult_37_years	chr8	75665348	75665377	75665376	+	High_confidence	11	14	35	1.564356	4.597276	chr8	75664381	75666029	LTR|ERV1|LTR12C	-	chr8	75664547	75775868	STRG.148902.1	+	75664547,75665344,75732609,75740962,75775445	75664576,75666044,75732737,75741061,75775868	0.742857
testis_male_adult_37_years	chr18	5018943	5018956	5018943	-	High_confidence	13	13	42	1.877227	4.149997	chr18	5018515	5019292	LTR|ERV1|LTR12	-	chr18	5018316	5018970	STRG.259036.2	-	5018316	5018970	0.952381
testis_male_adult_37_years	chr9	86256043	86256073	86256072	-	High_confidence	14	14	70	3.128712	5.006437	chr9	86255911	86256604	DNA|hAT-Charlie|Charlie25	-	chr9	86220264	86256033	C9orf153|NM_001276368.1	-	86220264,86227854,86229537,86237081,86255986	86221733,86228030,86229629,86237160,86256033	0.685714
testis_male_adult_37_years	chrX	50286921	50286950	50286921	+	High_confidence	3	3	10	0.446959	2.921928	chrX	50286613	50286946	SINE|Alu|AluSc	-	chrX	50286931	50351716	STRG.291266.4	+	50286931,50288779,50294862,50308504,50312536,50313855,50342201,50346651,50347625,50351240,50351606	50287115,50288887,50294993,50311496,50312632,50313948,50342339,50346807,50347775,50351371,50351716	1.000000
testis_male_adult_37_years	chr8	124857465	124857491	124857490	-	High_confidence	4	6	9	0.402263	2.725481	chr8	124857216	124857672	LTR|ERVL|LTR16A2	-	chr8	124834883	124857516	AC100858.3|ENST00000533496.1	-	124834883,124840123,124857362	124835143,124840262,124857516	0.555556
testis_male_adult_37_years	chr14	102178918	102178942	102178941	+	High_confidence	36	36	75	3.352192	5.368261	chr14	102178791	102179056	SINE|MIR|MIRb	-	chr14	102178941	102208902	WDR20|ENST00000558448.5	+	102178941,102194937,102197754,102208602	102178976,102195120,102197847,102208902	0.613333
testis_male_adult_37_years	chr1	202551720	202551740	202551739	+	RAMPAGE_only	4	4	16	0.715134	3.773557	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.500000
testis_male_adult_37_years	chr1	243221071	243221077	243221076	-	RAMPAGE_only	5	5	9	0.402263	2.750000	chr1	243221016	243221322	SINE|Alu|AluY	-	chr1	243125163	243200814	CEP170|ENST00000336415.8	-	243125163,243128248,243129359,243136142,243139936,243142285,243156220,243164283,243169627,243172696,243185778,243191017,243199059,243200517,243200776	243126738,243128300,243129453,243136231,243140107,243142463,243156455,243166116,243169754,243172846,243186422,243191494,243199194,243200680,243200814	0.777778
testis_male_adult_37_years	chr4	128427986	128428064	128428005	+	High_confidence	41	41	116	5.184723	5.576678	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.931034
testis_male_adult_37_years	chr1	239408143	239408187	239408143	+	RAMPAGE_only	6	7	26	1.162093	4.403856	chr1	239407991	239408310	LTR|ERVL-MaLR|THE1C	+	chr1	239386564	239886596	CHRM3|ENST00000468573.5	+	239386564,239492708,239545640,239632223,239678185,239718795,239826852,239827251,239886088	239387227,239492807,239545749,239632286,239678288,239718899,239827081,239827378,239886596	0.576923
testis_male_adult_37_years	chr1	145768101	145768109	145768101	-	RAMPAGE_only	2	2	6	0.268175	2.584963	chr1	145768031	145768184	SINE|MIR|MIRb	-	chr1	145746388	145773843	RNF115|ENST00000539368.2	-	145746388,145747994,145750406,145751437,145752977,145771710	145746997,145748110,145750500,145751510,145753049,145773843	0.833333
testis_male_adult_37_years	chr20	8248222	8248225	8248224	+	High_confidence	15	20	23	1.028006	3.697846	chr20	8248010	8248385	LTR|ERVL|LTR16A2	-	chr20	8247599	8250722	STRG.273274.1	+	8247599	8250722	0.913043
testis_male_adult_37_years	chr7	116286707	116286740	116286739	-	High_confidence	13	13	68	3.039321	5.169024	chr7	116286478	116286828	LINE|L1|HAL1b	-	chr7	116277131	116286734	AC073130.1|ENST00000420594.5	-	116277131,116286111,116286698	116277432,116286195,116286734	0.514706
testis_male_adult_37_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	14	14	14	0.625742	3.182006	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.928571
testis_male_adult_37_years	chr13	63740746	63740747	63740746	+	RAMPAGE_only	85	86	89	3.977934	4.057278	chr13	63740314	63740912	LTR|ERV1|HERVE-int	-	chr13	63742340	63742804	OR7E156P|ENST00000400303.3	+	63742340	63742804	0.662921
testis_male_adult_37_years	chr15	24536758	24536759	24536758	+	RAMPAGE_only	5	5	8	0.357567	2.807355	chr15	24536274	24536914	LTR|ERVL|ERVL47-int	+	chr15	24533694	24587777	PWRN1|ENST00000568045.5	+	24533694,24535679,24566655,24568530,24569782,24570031,24574509,24574906,24587566	24533952,24535806,24566800,24568563,24569809,24570128,24574813,24575003,24587777	0.500000
testis_male_adult_37_years	chr1	116297620	116297625	116297622	-	High_confidence	112	166	240	10.727014	4.746916	chr1	116297200	116298543	LTR|ERV1|LTR12C	-	chr1	116289422	116297640	STRG.11785.1	-	116289422,116294403,116297036	116289990,116294491,116297640	0.983333
testis_male_adult_37_years	chr1	173637930	173637976	173637975	+	High_confidence	5	8	42	1.877227	5.088630	chr1	173637824	173638104	LTR|ERV1|HERVIP10B3-int	+	chr1	173637718	173705806	STRG.15175.3	+	173637718,173702912	173671334,173705806	0.904762
testis_male_adult_37_years	chr4	31996659	31996692	31996691	-	High_confidence	3	3	11	0.491655	3.121928	chr4	31996206	31997789	LTR|ERV1|LTR12C	+	chr4	31995899	31996806	STRG.73441.2	-	31995899	31996806	0.727273
testis_male_adult_37_years	chr8	140934572	140934594	140934593	-	RAMPAGE_only	5	5	11	0.491655	3.459432	chr8	140934491	140934664	LINE|L2|L2	+	chr8	140658401	140921219	PTK2|ENST00000517887.5	-	140658401,140664916,140668268,140674297,140675459,140686631,140700890,140702569,140706118,140717597,140735250,140739017,140743229,140744651,140746759,140752231,140761164,140764233,140789473,140793353,140800458,140803542,140818276,140818879,140830471,140846259,140846598,140864311,140879470,140890542,140920813	140659678,140664997,140668424,140674404,140675499,140686694,140701022,140702707,140706205,140717709,140735455,140739107,140743330,140744767,140746860,140752316,140761262,140764290,140789526,140793384,140800576,140803650,140818354,140819020,140830526,140846322,140846678,140864399,140879637,140890769,140921219	0.545455
testis_male_adult_37_years	chr15	61857559	61857576	61857563	-	RAMPAGE_only	2	2	12	0.536351	3.459432	chr15	61857144	61857545	LINE|L2|L2c	-	chr15	61852403	61864760	VPS13C|ENST00000560637.5	-	61852403,61854870,61856285,61863439	61854558,61854954,61856409,61864760	0.583333
testis_male_adult_37_years	chr1	156337292	156337301	156337292	+	High_confidence	4	4	10	0.446959	2.947703	chr1	156337122	156337431	SINE|Alu|AluSx	+	chr1	156337313	156346995	TSACC|ENST00000368255.7	+	156337313,156339633,156344579,156346767	156337549,156339791,156344708,156346995	0.900000
testis_male_adult_37_years	chr12	21662312	21662316	21662312	+	High_confidence	223	242	361	16.135217	5.993641	chr12	21661347	21662731	LTR|ERV1|LTR12C	+	chr12	21662312	21774005	STRG.199880.1	+	21662312,21759913,21766355	21662771,21760085,21774005	0.925208
testis_male_adult_37_years	chrX	51819345	51819346	51819345	+	RAMPAGE_only	7	7	7	0.312871	2.521641	chrX	51819123	51819506	LTR|ERVL|LTR52	+	chrX	51803058	51902354	MAGED1|NM_001005332.1	+	51803058,51894268,51895052,51896408,51897207,51897546,51897794,51898113,51898284,51898580,51900181,51901552,51902145	51803117,51894349,51895760,51897077,51897271,51897626,51897886,51898193,51898327,51898643,51900296,51901938,51902354	1.000000
testis_male_adult_37_years	chr8	110829684	110829715	110829697	+	High_confidence	9	9	33	1.474964	3.870786	chr8	110829646	110830298	LTR|ERV1|LTR9C	-	chr8	110829552	110830373	STRG.153307.1	+	110829552	110830373	0.909091
testis_male_adult_37_years	chr3	68500631	68500647	68500646	+	High_confidence	15	15	37	1.653748	3.931502	chr3	68500509	68500731	DNA|hAT-Charlie|MER58A	+	chr3	68500636	68505872	LOC105377146|NR_135532.1	+	68500636,68505546	68500934,68505872	0.945946
testis_male_adult_37_years	chr13	58773940	58773963	58773940	+	High_confidence	6	6	19	0.849222	3.721612	chr13	58773220	58774427	LTR|ERV1|LTR12C	+	chr13	58774054	58810109	STRG.215662.1	+	58774054,58781208,58791517,58809871	58774432,58781380,58791613,58810109	1.000000
testis_male_adult_37_years	chr19	7642285	7642328	7642315	+	High_confidence	6	6	23	1.028006	4.001823	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.652174
testis_male_adult_37_years	chr4	25768573	25768574	25768573	-	High_confidence	16	17	20	0.893918	3.787144	chr4	25768270	25769032	LINE|L1|L1ME4a	+	chr4	25757533	25767772	SEL1L3|ENST00000507618.1	-	25757533,25758940,25765325,25767524,25767739	25757606,25759068,25765435,25767609,25767772	0.800000
testis_male_adult_37_years	chr2	190760381	190760406	190760405	-	High_confidence	4	4	11	0.491655	3.277613	chr2	190760093	190761528	LTR|ERV1|LTR12C	-	chr2	190760022	190761275	STRG.42053.2	-	190760022	190761275	0.818182
testis_male_adult_37_years	chr15	33128859	33128860	33128859	-	High_confidence	685	765	770	34.415837	6.198024	chr15	33128552	33129144	LTR|ERV1|LTR12_	-	chr15	32765544	33128861	STRG.233487.2	-	32765544,32776834,32798803,32804280,32857014,32888171,32898833,32899978,32901910,32908489,32910473,32926173,32964106,32968713,33008013,33064956,33088798,33128549	32774354,32776919,32798953,32804332,32857107,32888292,32898893,32900125,32902040,32908578,32910535,32926261,32964257,32969477,33008075,33065074,33088974,33128861	0.902597
testis_male_adult_37_years	chr15	40657076	40657145	40657076	+	RAMPAGE_only	6	6	29	1.296181	4.185230	chr15	40657015	40657149	LINE|L2|L2	+	chr15	40623131	40664339	KNL1|ENST00000526913.5	+	40623131,40628069,40628610,40629272,40640911,40644996,40645655,40646986,40650300,40650543,40651470,40652004,40654908,40657041,40657354,40659338,40662073,40663334	40625640,40628208,40628678,40629371,40641027,40645087,40645772,40647074,40650378,40650583,40651572,40652105,40654977,40657151,40657473,40659461,40662683,40664339	1.000000
testis_male_adult_37_years	chr4	20392153	20392182	20392163	+	High_confidence	70	72	244	10.905798	5.872085	chr4	20392050	20393212	DNA|TcMar-Tigger|Tigger3b	-	chr4	20392188	20394856	SLIT2-IT1|ENST00000515882.1	+	20392188,20393349,20393565,20394528	20392263,20393453,20393659,20394856	0.979508
testis_male_adult_37_years	chr2	10006401	10006408	10006401	-	High_confidence	7	7	12	0.536351	3.459432	chr2	10005564	10006737	LTR|ERV1|LTR12D	-	chr2	10002880	10006094	STRG.23975.1	-	10002880	10006094	0.500000
testis_male_adult_37_years	chrX	35890883	35890910	35890901	+	RAMPAGE_only	20	20	53	2.368882	4.439524	chrX	35890725	35891088	LTR|ERVL|LTR41	+	chrX	35919733	35990147	CFAP47|ENST00000297866.9	+	35919733,35926016,35941282,35948313,35951130,35951802,35953591,35955960,35966564,35967618,35970767,35971585,35971868,35975146,35975671,35989318	35920048,35926168,35941398,35948452,35951359,35951963,35953719,35956196,35966754,35967832,35970923,35971772,35971965,35975363,35975913,35990147	0.905660
testis_male_adult_37_years	chr1	95370213	95370247	95370246	+	High_confidence	7	7	23	1.028006	4.106603	chr1	95370103	95370257	LTR|ERVL-MaLR|MLT1M	+	chr1	95370242	95373350	STRG.9932.1	+	95370242,95372402,95373190	95371916,95372560,95373350	0.913043
testis_male_adult_37_years	chr7	45940414	45940452	45940451	+	High_confidence	80	80	203	9.073266	5.773049	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45940359	45994630	STRG.130409.1	+	45940359,45977518,45978349,45979908,45990532	45940880,45977678,45978468,45980027,45994630	0.940887
testis_male_adult_37_years	chr8	94813296	94813318	94813296	+	High_confidence	2	2	9	0.402263	3.000000	chr8	94813175	94813417	LINE|L2|L2c	-	chr8	94813310	94832158	INTS8|ENST00000522171.5	+	94813310,94824892,94827262,94827721,94828974,94831991	94813438,94825067,94827403,94827793,94829026,94832158	0.666667
testis_male_adult_37_years	chr19	51795162	51795177	51795176	+	High_confidence	3	3	7	0.312871	2.521641	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.857143
testis_male_adult_37_years	chr4	137943021	137943022	137943021	+	High_confidence	640	640	724	32.359826	5.643309	chr4	137941888	137943437	LTR|ERV1|LTR12C	+	chr4	137943026	137953854	STRG.82696.1	+	137943026,137950180,137952319	137943401,137950250,137953854	0.863260
testis_male_adult_37_years	chr20	35713327	35713373	35713360	-	High_confidence	2	2	11	0.491655	2.846439	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.818182
testis_male_adult_37_years	chr2	38867205	38867245	38867221	-	High_confidence	16	16	71	3.173408	5.178005	chr2	38866898	38867322	DNA|TcMar-Tigger|Tigger3c	+	chr2	38856794	38867230	DHX57|ENST00000479345.2	-	38856794,38858660,38860998,38862144,38863360,38867108	38857144,38858836,38861837,38862333,38863519,38867230	0.985915
testis_male_adult_37_years	chr4	177227482	177227483	177227482	+	High_confidence	10	10	12	0.536351	3.418296	chr4	177226748	177228090	LTR|ERV1|LTR12C	-	chr4	177227489	177228943	STRG.86594.1	+	177227489,177228543	177227770,177228943	0.750000
testis_male_adult_37_years	chr13	50397418	50397419	50397418	+	High_confidence	215	217	241	10.771710	4.988362	chr13	50396411	50397833	LTR|ERV1|LTR12C	+	chr13	50397418	50654079	DLEU1|ENST00000647700.1	+	50397418,50415088,50425577,50433412,50648592,50653710	50397896,50415202,50425729,50433550,50648643,50654079	0.975104
testis_male_adult_37_years	chr11	82403898	82403920	82403912	-	High_confidence	28	28	79	3.530975	5.831595	chr11	82403718	82405096	LTR|ERV1|LTR12C	+	chr11	81879850	82403913	MIR4300HG|NR_120571.1	-	81879850,81882153,82015607,82096460,82099973,82349925,82356511,82403678	81880167,81882296,82015734,82096608,82100207,82350004,82356628,82403913	0.645570
testis_male_adult_37_years	chr1	220413221	220413222	220413221	+	High_confidence	16	16	16	0.715134	3.155639	chr1	220412244	220413506	LTR|ERV1|LTR12C	+	chr1	220413273	220413656	STRG.19562.1	+	220413273	220413656	0.875000
testis_male_adult_37_years	chr21	44358973	44358974	44358973	-	High_confidence	14	15	16	0.715134	3.373557	chr21	44358780	44359336	LTR|ERV1|LTR12	-	chr21	44358285	44358793	STRG.282571.1	-	44358285	44358793	0.750000
testis_male_adult_37_years	chr10	28795965	28796007	28795970	-	High_confidence	18	19	157	7.017255	5.865471	chr10	28795966	28796239	LTR|ERVL-MaLR|MLT1J1	-	chr10	28792691	28795972	LINC00837|ENST00000608061.1	-	28792691,28794541,28795772	28792944,28794643,28795972	0.707006
testis_male_adult_37_years	chr4	188796627	188796633	188796632	-	High_confidence	47	59	87	3.888543	5.658054	chr4	188796449	188796590	SINE|MIR|MIR	-	chr4	188777678	188796633	AC093909.4|ENST00000514297.2	-	188777678,188791071,188795235	188778051,188791291,188796633	0.919540
testis_male_adult_37_years	chr1	229892007	229892032	229892031	-	High_confidence	17	21	93	4.156718	5.716156	chr1	229891943	229892201	LINE|L1|L1MEc	-	chr1	229870056	229892050	STRG.20347.1	-	229870056,229872612,229875663,229885539,229891965	229870074,229872680,229875721,229885818,229892050	0.763441
testis_male_adult_37_years	chr1	11611963	11611964	11611963	+	RAMPAGE_only	6	6	6	0.268175	2.584963	chr1	11611649	11612104	LTR|ERVL-MaLR|MLT1K	-	chr1	11609530	11613355	LINC01647|ENST00000453135.1	+	11609530,11611842,11612789	11610113,11611978,11613355	1.000000
testis_male_adult_37_years	chr2	34992261	34992279	34992261	-	High_confidence	6	6	18	0.804526	3.947703	chr2	34991877	34992957	LTR|ERV1|LTR12D	+	chr2	34987169	34992261	STRG.26614.1	-	34987169,34990691,34991871	34987570,34990813,34992261	0.944444
testis_male_adult_37_years	chr12	121203544	121203545	121203544	-	RAMPAGE_only	5	5	7	0.312871	2.521641	chr12	121203331	121203576	LTR|ERVL-MaLR|MLT1O	-	chr12	121162166	121210228	STRG.210620.1	-	121162166,121203497,121209848	121162417,121203600,121210228	1.000000
testis_male_adult_37_years	chr12	9449788	9449831	9449788	-	High_confidence	47	47	179	8.000565	5.129687	chr12	9449408	9450949	LTR|ERV1|LTR12C	-	chr12	9439035	9449817	STRG.198588.5	-	9439035,9447981	9443682,9449817	0.960894
testis_male_adult_37_years	chr22	18149858	18149869	18149858	+	High_confidence	3	3	12	0.536351	3.188722	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
testis_male_adult_37_years	chr1	79324977	79325008	79324995	+	High_confidence	14	18	43	1.921923	4.879526	chr1	79324743	79325260	LTR|ERV1|LTR8A	-	chr1	79325007	79346445	AL353651.3|ENST00000645557.1	+	79325007,79344960	79325029,79346445	0.558140
testis_male_adult_37_years	chr6	112097869	112097870	112097869	+	High_confidence	11	11	14	0.625742	3.392747	chr6	112097910	112098143	DNA|hAT-Charlie|MER20	+	chr6	112097838	112100895	STRG.119283.5	+	112097838,112099269,112100669	112098215,112099408,112100895	0.857143
testis_male_adult_37_years	chr8	10838069	10838093	10838092	-	RAMPAGE_only	2	2	7	0.312871	2.584963	chr8	10837845	10838230	LTR|ERV1|MER57C2	+	chr8	10765822	10839771	PINX1|ENST00000524114.5	-	10765822,10820192,10826151,10831664,10832891,10834665,10839707	10765916,10820269,10826244,10831743,10832984,10834775,10839771	0.857143
testis_male_adult_37_years	chr21	25934088	25934104	25934088	+	High_confidence	3	4	9	0.402263	2.750000	chr21	25933925	25934358	LTR|ERVL-MaLR|MLT1C	+	chr21	25934086	25941641	AP001442.1|ENST00000596385.5	+	25934086,25934909,25937789,25941307	25934366,25935048,25937912,25941641	0.666667
testis_male_adult_37_years	chr3	56939897	56939918	56939897	-	High_confidence	4	6	18	0.804526	4.058814	chr3	56939847	56940059	LTR|ERVL-MaLR|MLT1O	+	chr3	56753493	56939907	ARHGEF3|ENST00000498517.5	-	56753493,56754980,56773708,56882291,56938620,56939795	56753566,56755151,56773816,56882354,56938880,56939907	0.555556
testis_male_adult_37_years	chr20	33536943	33536962	33536943	+	RAMPAGE_only	2	3	8	0.357567	2.750000	chr20	33535685	33537533	Retroposon|SVA|SVA_D	-	chr20	33535104	33613958	STRG.275954.6	+	33535104,33571685,33606955,33611093	33545118,33574261,33607099,33613958	0.875000
testis_male_adult_37_years	chr19	47751102	47751103	47751102	+	High_confidence	6	6	8	0.357567	2.750000	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47750177	47757005	NOP53|ENST00000595143.5	+	47750177,47750907,47751519,47752511,47754526,47754708,47755783,47756527,47756687,47756998	47750286,47751107,47751590,47752607,47754631,47754757,47755822,47756604,47756744,47757005	0.625000
testis_male_adult_37_years	chr7	117145561	117145596	117145595	-	High_confidence	8	10	32	1.430269	4.476410	chr7	117145320	117145760	LTR|ERVL-MaLR|MLT1C	-	chr7	117112291	117145592	ST7-AS2|ENST00000442719.1	-	117112291,117117900,117118350,117144166,117145395	117112667,117117983,117118453,117144253,117145592	0.656250
testis_male_adult_37_years	chr12	109228770	109228793	109228770	+	RAMPAGE_only	14	14	55	2.458274	5.120186	chr12	109228779	109228852	SINE|MIR|MIRb	+	chr12	109232668	109266555	ACACB|ENST00000538526.5	+	109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064,109260479,109262356,109264231,109265109,109265388,109266235	109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260149,109260657,109262469,109264386,109265280,109265525,109266555	0.981818
testis_male_adult_37_years	chr14	81624085	81624086	81624085	+	High_confidence	21	21	27	1.206789	3.939471	chr14	81622661	81624332	LTR|ERV1|LTR12C	-	chr14	81623689	82075158	STRG.229676.1	+	81623689,81737482,81827806,82073927	81624369,81737695,81827901,82075158	0.555556
testis_male_adult_37_years	chr1	166490005	166490006	166490005	-	High_confidence	4	4	6	0.268175	2.584963	chr1	166489342	166489960	LINE|L2|L2a	-	chr1	166475771	166490039	LINC01675|ENST00000426519.1	-	166475771,166476880,166489860	166476204,166476969,166490039	0.500000
testis_male_adult_37_years	chr14	90536319	90536330	90536329	-	RAMPAGE_only	11	12	33	1.474964	4.536670	chr14	90536076	90536752	LINE|L2|L2a	+	chr14	90524563	90816417	TTC7B|ENST00000328459.10	-	90524563,90578105,90593485,90610741,90617928,90644047,90646950,90652840,90654992,90657173,90658303,90676522,90680471,90689539,90695499,90730074,90744791,90780737,90786173,90816174	90541589,90578308,90593626,90610839,90618045,90644208,90647023,90652898,90655110,90657278,90658387,90676660,90680535,90689712,90695578,90730196,90744922,90780906,90786328,90816417	1.000000
testis_male_adult_37_years	chr1	83751876	83751900	83751876	-	High_confidence	3	3	8	0.357567	3.000000	chr1	83751559	83751936	LTR|ERVL-MaLR|MLT1A	-	chr1	83750732	83752112	STRG.8625.1	-	83750732	83752112	0.500000
testis_male_adult_37_years	chr6	163054163	163054164	163054163	-	High_confidence	11	11	16	0.715134	3.625000	chr6	163054120	163054507	LTR|ERVL-MaLR|MLT1B	+	chr6	163042979	163054161	PACRG-AS2|NR_110871.1	-	163042979,163046583,163051259,163053924	163043169,163046683,163052032,163054161	1.000000
testis_male_adult_37_years	chr15	41728087	41728098	41728097	+	RAMPAGE_only	7	7	18	0.804526	3.690117	chr15	41728047	41728349	SINE|Alu|AluSx	+	chr15	41668894	41769941	MGA|ENST00000570161.5	+	41668894,41696074,41698862,41699063,41707727,41708103,41710690,41713150,41727179,41729163,41734521,41736180,41740052,41742545,41748636,41749110,41754436,41757787,41760322,41761738,41762128,41764885,41766003	41669958,41697023,41698941,41699159,41707859,41708208,41711349,41713496,41727406,41729349,41734594,41736698,41740203,41743172,41748927,41750615,41754567,41757839,41760529,41761850,41762362,41765062,41769941	0.833333
testis_male_adult_37_years	chr4	118265839	118265861	118265839	-	High_confidence	7	14	45	2.011315	4.986189	chr4	118265367	118266730	LTR|ERV1|LTR12C	+	chr4	118193404	118266282	STRG.80573.2	-	118193404,118251568,118258975,118265783	118204282,118251687,118259075,118266282	0.622222
testis_male_adult_37_years	chr6	3083275	3083298	3083297	+	RAMPAGE_only	3	5	12	0.536351	3.418296	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.916667
testis_male_adult_37_years	chr9	85807690	85807699	85807698	+	RAMPAGE_only	4	5	8	0.357567	3.000000	chr9	85807715	85807851	SINE|Alu|FLAM_C	+	chr9	85806001	85842879	LOC389765|NR_029410.1	+	85806001,85815878,85822879,85829462,85830323,85837758,85840076,85840749,85842723	85806133,85816263,85823080,85829606,85830576,85837965,85840262,85840849,85842879	0.750000
testis_male_adult_37_years	chr1	102581597	102581626	102581622	-	RAMPAGE_only	20	22	63	2.815841	5.037316	chr1	102581438	102581810	LTR|ERVL-MaLR|THE1D	-	chr1	102310252	102481157	STRG.10560.1	-	102310252,102387204,102387361,102388534,102389493,102480703	102310328,102387251,102387421,102388629,102389610,102481157	0.666667
testis_male_adult_37_years	chr12	31117606	31117645	31117606	-	High_confidence	47	55	105	4.693069	4.589209	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.942857
testis_male_adult_37_years	chr1	89688802	89688803	89688802	+	RAMPAGE_only	18	18	23	1.028006	4.392317	chr1	89688655	89689213	LTR|ERVL?|LTR87	-	chr1	89633084	89719535	LRRC8C|NM_032270.4	+	89633084,89686469,89712708	89633322,89686611,89719535	0.652174
testis_male_adult_37_years	chr2	241326675	241326687	241326681	+	RAMPAGE_only	13	13	36	1.609052	4.653496	chr2	241326334	241326806	LTR|ERVL-MaLR|MLT1F	+	chr2	241324153	241337716	SEPT2|ENST00000449239.5	+	241324153,241325992,241335125,241335974,241337381,241337672	241324241,241326113,241335212,241336098,241337516,241337716	0.666667
testis_male_adult_37_years	chr15	84778198	84778212	84778211	+	High_confidence	5	5	13	0.581047	3.392747	chr15	84778174	84778672	LTR|ERV1|LTR9B	-	chr15	84778259	84802438	ZNF592|ENST00000559607.1	+	84778259,84782656,84790704,84797868,84798314,84798587,84799097,84799841,84801862	84778312,84784895,84790872,84798045,84798474,84798875,84799210,84799977,84802438	0.846154
testis_male_adult_37_years	chr8	109329983	109330003	109329983	+	High_confidence	14	14	32	1.430269	4.298069	chr8	109329908	109330059	LINE|L2|L2b	-	chr8	109329996	109343584	STRG.153106.7	+	109329996,109336127,109339319,109340488,109343404	109330624,109336204,109339390,109340563,109343584	0.875000
testis_male_adult_37_years	chr14	90517208	90517209	90517208	-	High_confidence	21	22	24	1.072701	3.438722	chr14	90517128	90517301	DNA|hAT-Charlie|MER20	-	chr14	90515805	90517209	LOC105370619|NR_135274.1	-	90515805,90516984	90515887,90517209	0.916667
testis_male_adult_37_years	chr22	49724269	49724292	49724280	+	High_confidence	4	4	16	0.715134	3.906891	chr22	49723985	49724419	LTR|ERVL-MaLR|MLT1C	+	chr22	49724279	49730324	STRG.287167.1	+	49724279	49730324	0.937500
testis_male_adult_37_years	chr20	52175988	52176033	52176032	-	High_confidence	31	31	162	7.240734	5.654183	chr20	52175981	52176114	LTR|ERVL-MaLR|MLT1O	+	chr20	52088959	52176037	ZFP64|ENST00000477786.5	-	52088959,52097372,52098437,52160122,52164694,52165863,52175926	52089067,52097435,52098587,52160374,52164757,52166025,52176037	0.950617
testis_male_adult_37_years	chr7	100349732	100349742	100349741	+	RAMPAGE_only	5	5	11	0.491655	3.121928	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336242	100367663	STAG3L5P-PVRIG2P-PILRB|ENST00000444874.5	+	100336242,100338178,100338772,100345864,100349730,100351251,100352261,100352563,100352996,100353209,100353372,100355142,100356749,100358219,100358898,100359336,100367348	100336337,100338264,100338889,100345968,100349887,100351410,100352478,100352914,100353123,100353270,100353483,100355240,100356883,100358366,100359079,100359537,100367663	0.636364
testis_male_adult_37_years	chr19	6761156	6761182	6761181	-	High_confidence	11	11	22	0.983310	3.845351	chr19	6761110	6761508	LTR|ERVL-MaLR|MLT1J2	+	chr19	6754973	6761165	SH2D3A|ENST00000599563.5	-	6754973,6759593,6760637,6761089	6755315,6759670,6760987,6761165	0.954545
testis_male_adult_37_years	chr13	100481198	100481223	100481198	-	High_confidence	4	4	14	0.625742	3.182006	chr13	100480888	100481276	DNA|TcMar-Tigger|MER44C	-	chr13	100479558	100481157	PCCA-AS1|ENST00000414553.1	-	100479558,100480260,100481119	100479763,100480363,100481157	0.857143
testis_male_adult_37_years	chr3	165918767	165918809	165918767	+	High_confidence	4	4	17	0.759830	3.750000	chr3	165917730	165919011	LTR|ERV1|LTR12C	-	chr3	165918581	165920447	STRG.65200.1	+	165918581	165920447	0.764706
testis_male_adult_37_years	chr19	52661776	52661809	52661782	-	RAMPAGE_only	9	10	38	1.698444	4.648510	chr19	52661707	52662067	LINE|L2|L2a	-	chr19	52654070	52690496	ZNF83|ENST00000600457.5	-	52654070,52655560,52660761,52690442	52654403,52655687,52660843,52690496	0.578947
testis_male_adult_37_years	chr3	186440388	186440395	186440390	+	High_confidence	10	14	29	1.296181	4.280395	chr3	186440358	186440534	DNA|hAT-Charlie|MER3	+	chr3	186440379	186445242	LINC02020|ENST00000435548.1	+	186440379,186440981,186444905	186440448,186441179,186445242	0.862069
testis_male_adult_37_years	chr2	131577578	131577599	131577578	+	RAMPAGE_only	6	6	11	0.491655	3.095795	chr2	131577132	131577656	LINE|L1|L1MA6	-	chr2	131543521	131591430	STRG.36693.3	+	131543521,131545045,131555071,131564860,131577507,131580151,131582017,131588664	131543823,131553166,131557463,131575207,131577618,131580264,131582129,131591430	0.636364
testis_male_adult_37_years	chr6	26122997	26122998	26122997	-	High_confidence	11	11	17	0.759830	3.454822	chr6	26122928	26123343	LTR|ERV1|MER101	-	chr6	26114872	26123910	HIST1H2BC|ENST00000314332.5	-	26114872,26123514	26115135,26123910	0.941176
testis_male_adult_37_years	chr12	109179278	109179288	109179281	+	RAMPAGE_only	4	4	13	0.581047	3.251629	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109175976	109209822	STRG.209222.11	+	109175976,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206592	109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109209822	0.846154
testis_male_adult_37_years	chr12	81512337	81512391	81512374	-	High_confidence	14	14	73	3.262800	5.544653	chr12	81512110	81512385	LINE|L2|L2	+	chr12	81259435	81512362	PPFIA2|ENST00000550359.6	-	81259435,81261948,81263230,81266951,81267911,81277316,81281256,81283009,81284240,81294834,81299300,81325776,81339179,81341077,81344663,81347532,81353118,81358081,81362692,81367107,81368724,81369110,81374633,81375795,81384022,81405786,81439971,81445555,81457764,81512283	81259660,81262040,81263390,81267020,81268087,81277414,81281450,81283039,81284303,81295035,81299382,81325870,81339334,81341208,81344693,81347770,81353339,81358217,81362784,81367170,81368856,81369194,81374768,81375942,81384244,81405903,81440046,81445720,81457866,81512362	0.863014
testis_male_adult_37_years	chr19	55676628	55676639	55676628	+	High_confidence	2	2	10	0.446959	2.725481	chr19	55676523	55676713	SINE|MIR|MIRb	-	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.700000
testis_male_adult_37_years	chr6	2990736	2990755	2990754	-	RAMPAGE_only	4	4	16	0.715134	3.077820	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	1.000000
testis_male_adult_37_years	chr12	79727750	79727751	79727750	+	High_confidence	45	45	54	2.413578	4.989818	chr12	79726976	79730146	LINE|L1|L1MD1	+	chr12	79726863	79728330	STRG.205919.1	+	79726863	79728330	0.518519
testis_male_adult_37_years	chr1	241134935	241134977	241134976	+	High_confidence	3	3	11	0.491655	3.321928	chr1	241134778	241135144	LTR|ERV1|MER48	+	chr1	241134991	241137546	STRG.21643.1	+	241134991	241137546	0.636364
testis_male_adult_37_years	chr5	154038408	154038413	154038408	-	High_confidence	6	6	10	0.446959	2.725481	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.800000
testis_male_adult_37_years	chr5	29143497	29143512	29143497	+	High_confidence	25	26	101	4.514285	5.253892	chr5	29143203	29143988	LTR|ERVL|MER21C	+	chr5	29143502	29172975	LOC101929660|NR_130777.1	+	29143502,29145747,29146270,29153458,29162415,29164416,29164929,29169559,29172042	29143729,29145874,29146461,29153620,29162590,29164514,29165046,29169586,29172975	0.910891
testis_male_adult_37_years	chr16	49454078	49454109	49454086	-	High_confidence	6	6	22	0.983310	4.021928	chr16	49454082	49454228	LTR|ERVL-MaLR|MLT1L	+	chr16	49451436	49453472	STRG.244933.1	-	49451436	49453472	0.590909
testis_male_adult_37_years	chr20	47990084	47990103	47990084	-	High_confidence	18	18	52	2.324186	5.280268	chr20	47989885	47990095	DNA|hAT-Charlie|MER20	-	chr20	47976865	47990090	STRG.276395.1	-	47976865,47980394,47988606,47990014	47978771,47980778,47988742,47990090	0.750000
testis_male_adult_37_years	chrX	2373112	2373113	2373112	-	RAMPAGE_only	22	22	22	0.983310	4.277613	chrX	2372960	2373301	LTR|ERVL-MaLR|THE1B	-	chrX	2209974	2266937	STRG.287702.6	-	2209974,2220791,2243022,2266739	2211614,2221229,2243230,2266937	0.727273
testis_male_adult_37_years	chr2	229939970	229939984	229939970	-	RAMPAGE_only	4	4	10	0.446959	3.169925	chr2	229939800	229940101	SINE|Alu|AluJb	+	chr2	229859210	229923239	TRIP12|ENST00000435716.5	-	229859210,229879981,229923147	229859574,229880128,229923239	0.600000
testis_male_adult_37_years	chr21	44818754	44818789	44818773	-	High_confidence	28	28	109	4.871852	5.521063	chr21	44818658	44818746	SINE|MIR|MIR	-	chr21	44805616	44818779	SUMO3|ENST00000479153.1	-	44805616,44809046,44813975,44818668	44807040,44809118,44814104,44818779	0.944954
testis_male_adult_37_years	chr2	100739925	100739958	100739957	+	High_confidence	24	24	104	4.648373	5.704854	chr2	100739787	100740315	LTR|ERVL-MaLR|MLT1F2	+	chr2	100739948	100747332	STRG.33386.1	+	100739948,100747214	100741211,100747332	0.951923
testis_male_adult_37_years	chr4	75822958	75822973	75822958	+	High_confidence	9	9	21	0.938614	4.121928	chr4	75822883	75823137	SINE|MIR|MIR	+	chr4	75822962	75825838	STRG.76366.1	+	75822962,75825138	75823080,75825838	0.761905
testis_male_adult_37_years	chr8	41488347	41488383	41488347	+	RAMPAGE_only	2	2	10	0.446959	3.169925	chr8	41488395	41488492	LINE|L1|L1MD	+	chr8	41490395	41509769	GOLGA7|ENST00000518270.5	+	41490395,41490832,41497508,41505910,41507058,41509583	41490566,41490965,41497661,41506012,41507121,41509769	0.800000
testis_male_adult_37_years	chr2	558807	558824	558818	+	High_confidence	4	4	15	0.670438	3.378783	chr2	558778	558947	SINE|MIR|MIR	+	chr2	558686	560830	STRG.22863.1	+	558686,559108,560077	558990,559216,560830	0.866667
testis_male_adult_37_years	chr10	59960877	59960896	59960884	-	High_confidence	40	40	136	6.078641	4.607736	chr10	59960613	59961584	LINE|L1|L1MA6	-	chr10	59955429	59960882	LINC01553|ENST00000521074.1	-	59955429,59959565,59960850	59959323,59959968,59960882	0.963235
testis_male_adult_37_years	chr12	58788286	58788303	58788302	-	RAMPAGE_only	4	4	16	0.715134	3.506891	chr12	58788263	58788429	SINE|Alu|AluY	-	chr12	58635513	58781719	STRG.203536.3	-	58635513,58757472,58781570	58757032,58768732,58781719	0.500000
testis_male_adult_37_years	chr4	63107158	63107174	63107158	-	High_confidence	3	3	10	0.446959	2.921928	chr4	63106912	63107694	LINE|L1|L1M1	+	chr4	63046999	63107197	STRG.75331.2	-	63046999,63098356,63107036	63047121,63098456,63107197	0.700000
testis_male_adult_37_years	chr11	108412628	108412641	108412640	-	RAMPAGE_only	13	13	32	1.430269	4.538910	chr11	108412532	108412734	SINE|Alu|AluJb	+	chr11	108382999	108461569	C11orf65|ENST00000529391.5	-	108382999,108385919,108393207,108405428,108406762,108407095,108431745,108461478	108383175,108385975,108393378,108405559,108406963,108407149,108431838,108461569	1.000000
testis_male_adult_37_years	chr15	97876326	97876327	97876326	+	High_confidence	467	474	488	21.811595	5.771116	chr15	97875560	97876737	LTR|ERV1|LTR12D	+	chr15	97876288	97878386	AC024651.2|ENST00000562480.1	+	97876288	97878386	0.969262
testis_male_adult_37_years	chr9	128187884	128187915	128187905	-	RAMPAGE_only	4	4	17	0.759830	3.327820	chr9	128187633	128188001	LINE|L1|L1M5	+	chr9	128180798	128190467	CIZ1|ENST00000474442.1	-	128180798,128185546,128187862,128190328	128180814,128185776,128187934,128190467	0.647059
testis_male_adult_37_years	chr12	2335708	2335721	2335720	-	High_confidence	3	3	9	0.402263	2.725481	chr12	2335687	2335765	SINE|MIR|MIRc	+	chr12	2332860	2335702	AC005293.1|ENST00000648763.1	-	2332860,2333930,2335187	2333660,2334161,2335702	1.000000
testis_male_adult_37_years	chr11	86938472	86938490	86938474	-	RAMPAGE_only	11	17	36	1.609052	4.370859	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86892213	86922104	AP001528.2|ENST00000528660.1	-	86892213,86896412,86921235	86892372,86896540,86922104	0.916667
testis_male_adult_37_years	chr16	1957582	1957606	1957582	-	High_confidence	3	3	13	0.581047	3.418296	chr16	1957336	1958737	LTR|ERV1|LTR12C	-	chr16	1954656	1957597	RPL3L|ENST00000566484.1	-	1954656,1957393	1955009,1957597	0.538462
testis_male_adult_37_years	chr15	42583010	42583052	42583042	+	RAMPAGE_only	24	25	46	2.056011	4.565345	chr15	42582899	42583140	SINE|MIR|MIRb	+	chr15	42575669	42720859	STRG.234669.3	+	42575669,42583345,42585520,42634855,42637906,42638025,42651015,42652519,42661157,42662793,42663280,42663819,42665785,42669157,42674439,42674826,42675871,42681421,42682103,42684115,42694527,42695139,42695742,42716676,42716926,42717730,42717976,42718434,42718751,42719472	42575762,42583415,42585637,42634972,42637939,42638812,42651085,42652592,42661225,42662891,42663490,42665330,42665848,42669337,42674491,42675746,42675975,42681612,42682575,42694342,42694725,42695323,42695880,42716764,42717048,42717795,42718179,42718514,42718910,42720859	0.608696
testis_male_adult_37_years	chr1	194859048	194859089	194859078	-	High_confidence	6	6	23	1.028006	3.880180	chr1	194858882	194860246	LTR|ERV1|LTR12C	+	chr1	194858393	194859183	STRG.17204.1	-	194858393	194859183	0.826087
testis_male_adult_37_years	chr16	86722092	86722095	86722092	+	High_confidence	4	5	9	0.402263	3.169925	chr16	86722054	86722212	LTR|ERVL-MaLR|MLT1A0	+	chr16	86722091	86737719	LINC02188|ENST00000562064.1	+	86722091,86727867,86734825,86737409	86722147,86727967,86734909,86737719	0.555556
testis_male_adult_37_years	chr7	103274363	103274364	103274363	-	RAMPAGE_only	29	30	36	1.609052	4.535849	chr7	103274079	103275487	LTR|ERV1|LTR12C	-	chr7	103175132	103280219	DPY19L2P2|ENST00000439473.5	-	103175132,103184001,103185437,103195439,103197186,103198594,103210266,103212160,103214000,103216462,103225104,103233799,103234648,103237755,103238802,103240561,103242988,103254781,103257603,103271731,103274069,103277613,103279832	103175411,103184127,103185537,103195614,103197306,103198619,103210313,103212232,103214102,103216543,103225164,103233886,103234726,103237855,103238871,103240653,103243046,103254875,103257724,103271869,103275627,103277638,103280219	0.777778
testis_male_adult_37_years	chr20	52204307	52204334	52204307	-	High_confidence	2	2	8	0.357567	2.750000	chr20	52204307	52204429	LTR|ERVL-MaLR|MLT1J	-	chr20	52160260	52204308	ZFP64|ENST00000461898.1	-	52160260,52164694,52165863,52186831,52204195	52160374,52164757,52166025,52187071,52204308	0.875000
testis_male_adult_37_years	chr14	92890516	92890519	92890518	+	High_confidence	6	11	12	0.536351	3.095795	chr14	92890365	92890711	LTR|ERVL-MaLR|MLT1A0	+	chr14	92891423	92893506	AL117192.1|ENST00000557689.1	+	92891423,92891794	92891701,92893506	0.916667
testis_male_adult_37_years	chr2	150541709	150541714	150541713	-	High_confidence	70	76	139	6.212729	5.146207	chr2	150541288	150543121	LTR|ERV1|LTR12C	-	chr2	150468206	150541834	STRG.38029.1	-	150468206,150471626,150474874,150486693,150487267,150490833,150541262	150470238,150471761,150474984,150486781,150487455,150490918,150541834	1.000000
testis_male_adult_37_years	chr2	205874486	205874487	205874486	-	High_confidence	48	48	50	2.234795	5.069236	chr2	205874090	205874705	LTR|ERV1|LTR12_	-	chr2	205873951	205874480	STRG.43919.1	-	205873951	205874480	0.920000
testis_male_adult_37_years	chr8	96453070	96453071	96453070	+	High_confidence	276	276	281	12.559546	4.836665	chr8	96452138	96453488	LTR|ERV1|LTR12C	+	chr8	96453083	96453649	STRG.151775.1	+	96453083	96453649	0.967972
testis_male_adult_37_years	chr5	151547264	151547282	151547264	-	RAMPAGE_only	15	15	39	1.743140	3.107907	chr5	151546964	151547476	DNA|hAT-Charlie|MER113	-	chr5	151504091	151568944	FAT2|NM_001447.2	-	151504091,151507153,151510020,151512164,151517619,151521275,151525767,151527233,151527995,151529177,151531586,151534408,151537792,151540566,151542284,151549294,151550589,151551466,151553176,151554361,151556343,151563324,151565672	151506097,151507611,151510174,151512606,151517765,151522086,151525965,151527377,151528133,151529392,151531970,151534642,151537946,151540763,151546337,151549505,151550871,151551606,151553387,151554673,151556402,151563639,151568944	0.948718
testis_male_adult_37_years	chr5	157655920	157655947	157655946	+	RAMPAGE_only	14	16	62	2.771145	5.062515	chr5	157655745	157658510	LTR|ERV1|PABL_A-int	+	chr5	157651550	157665525	STRG.104138.1	+	157651550,157657850,157658528	157652332,157658011,157665525	0.854839
testis_male_adult_37_years	chr1	104407963	104407967	104407966	-	High_confidence	61	61	160	7.151343	5.839339	chr1	104407427	104408642	LTR|ERV1|LTR12D	-	chr1	104405963	104407955	STRG.10668.1	-	104405963	104407955	0.981250
testis_male_adult_37_years	chr22	40426721	40426752	40426721	-	RAMPAGE_only	10	12	51	2.279490	5.268758	chr22	40426540	40426802	LINE|L2|L2c	+	chr22	40410281	40436310	MRTFA|ENST00000614754.4	-	40410281,40416975,40417340,40418373,40420404,40420846,40423535,40424205,40429605,40431404,40435498,40436300	40411907,40417046,40417493,40419384,40420576,40421100,40423685,40424381,40429767,40431480,40435554,40436310	0.568627
testis_male_adult_37_years	chr18	8809460	8809492	8809491	+	High_confidence	6	6	15	0.670438	3.906891	chr18	8809476	8809541	DNA|hAT-Charlie|Charlie4a	+	chr18	8809817	8813157	MTCL1|ENST00000518226.1	+	8809817,8812978	8810198,8813157	0.533333
testis_male_adult_37_years	chr7	128709057	128709090	128709089	+	High_confidence	82	86	220	9.833096	6.712299	chr7	128708844	128709287	LTR|ERVL-MaLR|MLT1J	+	chr7	128709089	128719082	STRG.138161.9	+	128709089,128713922,128716812,128718830	128709207,128714132,128716997,128719082	0.809091
testis_male_adult_37_years	chr4	55996925	55996939	55996925	+	RAMPAGE_only	7	8	21	0.938614	4.297079	chr4	55996922	55997021	SINE|MIR|MIRc	-	chr4	55964865	56033104	CEP135|ENST00000506202.1	+	55964865,55969062,55971269,55974745,55980142,55981226,55985280,55991933,55999301,55999490,56008326,56009734,56011411,56011799,56017647,56019352,56020675,56024500,56031359	55965859,55969128,55971408,55974969,55980295,55981379,55985358,55992085,55999417,55999645,56008382,56009903,56011522,56011985,56017857,56019555,56020780,56024614,56033104	1.000000
testis_male_adult_37_years	chr5	129003505	129003528	129003505	+	RAMPAGE_only	2	2	8	0.357567	2.750000	chr5	129003555	129003689	SINE|Alu|AluJo	+	chr5	128965527	129033282	SLC27A6|ENST00000506176.1	+	128965527,128965873,128985132,128988599,128990339,129015884,129023619,129027132,129028344,129029576,129033105	128965697,128966618,128985336,128988758,128990464,129016079,129023710,129027331,129028442,129029707,129033282	0.500000
testis_male_adult_37_years	chr3	64023988	64024007	64023988	-	High_confidence	47	62	124	5.542291	5.900420	chr3	64023821	64024009	SINE|MIR|MIRb	-	chr3	64010548	64024010	PSMD6|NM_001271780.1	-	64010548,64010877,64013438,64018598,64018817,64019295,64022317,64023804	64010764,64010955,64013607,64018707,64019037,64019441,64022523,64024010	0.975806
testis_male_adult_37_years	chr6	79631256	79631329	79631302	+	High_confidence	22	22	104	4.648373	5.580885	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.961538
testis_male_adult_37_years	chr21	33122042	33122062	33122061	-	RAMPAGE_only	5	5	10	0.446959	2.947703	chr21	33122047	33122204	LTR|ERVL-MaLR|MLT1M	-	chr21	33111703	33123700	LOC101928107|NR_109961.1	-	33111703,33114385,33123611	33112729,33114623,33123700	0.500000
testis_male_adult_37_years	chr19	52345402	52345439	52345428	+	High_confidence	8	15	50	2.234795	4.995026	chr19	52345424	52345695	DNA|TcMar-Tigger|Tigger3	+	chr19	52345428	52367123	ZNF610|NM_173530.2	+	52345428,52347706,52349153,52353681,52354250,52365697	52345546,52347944,52349235,52353808,52354379,52367123	0.960000
testis_male_adult_37_years	chr6	4769062	4769064	4769063	+	RAMPAGE_only	5	8	9	0.402263	2.750000	chr6	4768249	4769318	LINE|L1|L1MC3	+	chr6	4773040	4892347	CDYL|ENST00000483019.1	+	4773040,4891712	4773178,4892347	0.888889
testis_male_adult_37_years	chr3	70617749	70617789	70617785	+	High_confidence	28	30	77	3.441584	5.708558	chr3	70617119	70617866	LTR|ERV1|LTR17	+	chr3	70617724	70619774	STRG.55161.1	+	70617724,70619389	70617869,70619774	0.597403
testis_male_adult_37_years	chr2	201458835	201458848	201458835	+	RAMPAGE_only	2	2	7	0.312871	2.521641	chr2	201458879	201459004	SINE|Alu|FLAM_C	+	chr2	201451795	201480846	STRADB|ENST00000392249.6	+	201451795,201454745,201458783,201469952,201472954,201474646,201475618,201477618,201478086,201478356,201479488,201480007	201451938,201454852,201458864,201470052,201473076,201474755,201475742,201477790,201478191,201478601,201479531,201480846	1.000000
testis_male_adult_37_years	chr5	173579607	173579643	173579627	+	High_confidence	41	41	117	5.229419	4.983524	chr5	173579189	173579729	LTR|ERVL-MaLR|MLT1F	-	chr5	173579633	173581612	LOC285593|NR_027109.2	+	173579633,173580228	173579682,173581612	0.974359
testis_male_adult_37_years	chr4	67286113	67286135	67286134	-	High_confidence	9	13	31	1.385573	4.348394	chr4	67285663	67287251	LTR|ERV1|LTR12C	-	chr4	67285524	67286220	STRG.75705.1	-	67285524	67286220	0.838710
testis_male_adult_37_years	chr2	218287279	218287306	218287279	-	High_confidence	70	70	173	7.732389	5.435847	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.924855
testis_male_adult_37_years	chr3	110667370	110667390	110667370	-	High_confidence	5	5	10	0.446959	2.947703	chr3	110665996	110667913	LINE|L1|L1PBa	+	chr3	110638351	110667405	STRG.58952.1	-	110638351,110640583,110667190	110638593,110640706,110667405	0.500000
testis_male_adult_37_years	chr1	76040526	76040566	76040526	+	RAMPAGE_only	10	12	47	2.100707	5.043951	chr1	76040192	76040658	LTR|ERV1|MER61E	-	chr1	76041690	76066228	AC092813.2|ENST00000434540.1	+	76041690,76066037	76041898,76066228	0.744681
testis_male_adult_37_years	chr18	66866669	66866713	66866669	-	High_confidence	29	29	157	7.017255	5.047397	chr18	66866519	66866942	LTR|ERV1|LTR12C	+	chr18	66862523	66866760	STRG.263552.3	-	66862523	66866760	0.808917
testis_male_adult_37_years	chr2	9501350	9501353	9501352	-	RAMPAGE_only	6	11	17	0.759830	3.250000	chr2	9501079	9501359	LINE|L1|L1ME3Cz	+	chr2	9489856	9505318	STRG.23929.8	-	9489856,9491100,9492897,9493746,9494636,9497113,9502172	9490518,9491151,9492986,9493825,9494767,9497248,9505318	0.941176
testis_male_adult_37_years	chr3	132285409	132285413	132285409	-	High_confidence	44	47	91	4.067326	5.867524	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	132012448	132285410	STRG.61440.6	-	132012448,132034566,132039524,132284042,132285239	132019128,132037710,132040321,132284170,132285410	0.615385
testis_male_adult_37_years	chr2	34991951	34991976	34991951	-	High_confidence	6	8	16	0.715134	3.405639	chr2	34991877	34992957	LTR|ERV1|LTR12D	+	chr2	34987169	34992261	STRG.26614.1	-	34987169,34990691,34991871	34987570,34990813,34992261	0.875000
testis_male_adult_37_years	chr7	22179720	22179748	22179746	-	RAMPAGE_only	2	4	8	0.357567	2.807355	chr7	22179495	22180104	LTR|ERV1|MER41B	+	chr7	22118308	22193735	RAPGEF5|ENST00000620335.4	-	22118308,22125603,22131036,22136037,22136932,22140024,22145043,22154533,22156809,22157854,22160517,22162396,22167069,22193366	22122521,22125658,22131101,22136125,22136983,22140115,22145114,22154604,22156888,22157885,22160615,22162541,22167148,22193735	0.500000
testis_male_adult_37_years	chr7	15396574	15396575	15396574	-	High_confidence	93	95	125	5.586986	6.090282	chr7	15396179	15397560	LTR|ERV1|LTR12D	-	chr7	15371981	15396594	STRG.126852.4	-	15371981,15390839,15394112,15396045	15390750,15390905,15394179,15396594	0.920000
testis_male_adult_37_years	chr2	213923806	213923839	213923806	+	High_confidence	27	27	80	3.575671	5.540603	chr2	213921220	213924593	LINE|L1|L1PA14	-	chr2	213923576	214151903	STRG.44693.16	+	213923576,213929959,214013950,214108195,214149139	213924004,213930145,214014077,214108261,214151903	0.800000
testis_male_adult_37_years	chr12	81270620	81270661	81270640	+	RAMPAGE_only	5	5	23	1.028006	3.970573	chr12	81270335	81270781	LTR|ERVL-MaLR|MLT1C	+	chr12	81279184	81312373	PPFIA2-AS1|ENST00000552534.5	+	81279184,81282686,81292393,81296633,81298062,81312046	81279305,81282794,81292524,81296769,81298163,81312373	0.956522
testis_male_adult_37_years	chr21	28090339	28090410	28090339	+	High_confidence	10	10	68	3.039321	4.138267	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	1.000000
testis_male_adult_37_years	chr6	88713197	88713241	88713197	+	High_confidence	2	2	18	0.804526	3.219528	chr6	88713058	88713402	LTR|ERVL-MaLR|MLT1A	+	chr6	88713229	88718527	STRG.116558.1	+	88713229,88717633	88713339,88718527	0.722222
testis_male_adult_37_years	chr11	60825387	60825408	60825387	-	High_confidence	4	4	13	0.581047	2.792481	chr11	60825230	60825594	LTR|ERVL-MaLR|MLT1C	-	chr11	60825119	60825415	STRG.187740.1	-	60825119	60825415	0.692308
testis_male_adult_37_years	chr8	3183046	3183085	3183077	-	High_confidence	34	38	196	8.760395	4.992222	chr8	3182937	3183057	SINE|Alu|AluY	-	chr8	3096901	3183146	STRG.142250.4	-	3096901,3106527,3107717,3108602,3110157,3118398,3142464,3151396,3157896,3162158,3181109,3182990	3097037,3106641,3107798,3108748,3110335,3118587,3142674,3151513,3157966,3162277,3181214,3183146	0.938776
testis_male_adult_37_years	chr15	70586605	70586606	70586605	-	High_confidence	448	450	453	20.247239	5.346698	chr15	70586191	70587730	LTR|ERV1|LTR12C	-	chr15	70570957	70586606	LINC02204|ENST00000630447.1	-	70570957,70585874	70573431,70586606	0.982340
testis_male_adult_37_years	chr11	111097176	111097178	111097176	+	High_confidence	14	18	27	1.206789	4.023465	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111097197	111106131	STRG.193952.1	+	111097197,111098234,111105462	111097361,111098316,111106131	0.925926
testis_male_adult_37_years	chr2	135606057	135606065	135606064	+	RAMPAGE_only	6	8	10	0.446959	2.921928	chr2	135605983	135606461	LTR|ERVL-MaLR|MLT1H1	-	chr2	135604855	135631938	STRG.36985.8	+	135604855,135616667,135622653,135631717,135631860	135616193,135621608,135622732,135631777,135631938	1.000000
testis_male_adult_37_years	chr2	163913610	163913622	163913610	-	RAMPAGE_only	2	2	8	0.357567	2.807355	chr2	163913429	163914868	LTR|ERV1|LTR12C	+	chr2	163749572	164352223	AC016766.1|ENST00000429636.1	-	163749572,163869148,163950180,164250719,164352119	163749907,163869252,163950259,164250811,164352223	0.625000
testis_male_adult_37_years	chr11	59537460	59537486	59537485	+	High_confidence	4	4	27	1.206789	4.310443	chr11	59537440	59537641	SINE|Alu|AluSx3	+	chr11	59537401	59538661	STRG.187682.1	+	59537401,59537744	59537571,59538661	0.814815
testis_male_adult_37_years	chr1	74614579	74614626	74614625	+	RAMPAGE_only	6	6	28	1.251485	3.430457	chr1	74614392	74614692	SINE|Alu|AluY	+	chr1	74589734	74626098	ERICH3-AS1|NR_121670.1	+	74589734,74615205,74621395	74589907,74615296,74626098	0.892857
testis_male_adult_37_years	chr1	189149762	189149763	189149762	+	High_confidence	140	141	200	8.939178	5.916608	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	189149561	189452638	STRG.16527.1	+	189149561,189150541,189307728,189452040	189149876,189150759,189307878,189452638	0.735000
testis_male_adult_37_years	chr17	21531937	21531980	21531952	+	High_confidence	21	22	48	2.145403	4.517894	chr17	21531340	21532290	DNA|TcMar-Tigger|Tigger17	+	chr17	21532002	21535389	STRG.251980.1	+	21532002	21535389	0.958333
testis_male_adult_37_years	chr4	124996	125011	124996	+	High_confidence	5	5	13	0.581047	3.546594	chr4	124971	125157	LTR|ERV1|MER57E3	-	chr4	124537	210141	STRG.68918.7	+	124537,126847,131409,201080,201631	125296,130914,131505,201211,210141	1.000000
testis_male_adult_37_years	chr7	132758983	132759007	132759006	+	High_confidence	7	7	13	0.581047	3.546594	chr7	132758833	132759181	LTR|ERVL-MaLR|MLT1B	+	chr7	132758969	132760632	LOC100506937|NR_134332.1	+	132758969,132760317	132759405,132760632	1.000000
testis_male_adult_37_years	chr12	27030031	27030032	27030031	+	High_confidence	5	5	8	0.357567	2.500000	chr12	27029851	27030119	LINE|L1|L1MDa	+	chr12	27030259	27030673	MED21|ENST00000621885.1	+	27030259	27030673	0.500000
testis_male_adult_37_years	chr17	1829438	1829460	1829459	-	High_confidence	6	6	20	0.893918	3.892407	chr17	1829188	1829555	LINE|L2|L2c	+	chr17	1800723	1829459	SMYD4|ENST00000570368.5	-	1800723,1804625,1811970,1827860,1829348	1801024,1804715,1812115,1828006,1829459	0.750000
testis_male_adult_37_years	chr9	33393821	33393865	33393843	-	High_confidence	3	4	20	0.893918	3.784184	chr9	33393691	33394003	LINE|L2|L2b	+	chr9	33385505	33394176	AQP7|ENST00000447660.3	-	33385505,33386076,33386403,33393796	33385866,33386195,33386541,33394176	0.700000
testis_male_adult_37_years	chr17	74112901	74112902	74112901	-	High_confidence	143	143	167	7.464214	5.441400	chr17	74112609	74113873	LTR|ERV1|LTR12E	-	chr17	74043451	74112899	LINC02074|ENST00000581028.5	-	74043451,74091021,74106879,74112645	74043509,74091176,74106981,74112899	0.844311
testis_male_adult_37_years	chr3	132285531	132285558	132285557	-	High_confidence	75	90	377	16.850351	7.260104	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.708223
testis_male_adult_37_years	chr21	17568599	17568654	17568599	+	RAMPAGE_only	17	18	45	2.011315	3.268919	chr21	17568559	17568690	SINE|Alu|FLAM_C	-	chr21	17512905	17570111	CXADR|NM_001338.4	+	17512905,17547026,17551748,17558975,17560701,17561337,17565427	17513172,17547193,17551953,17559131,17560824,17561476,17570111	1.000000
testis_male_adult_37_years	chr5	26485639	26485660	26485639	+	High_confidence	4	6	16	0.715134	3.640224	chr5	26484296	26485843	LTR|ERV1|LTR12C	-	chr5	26485668	26499195	STRG.91391.1	+	26485668,26499131	26485905,26499195	0.500000
testis_male_adult_37_years	chr17	16783594	16783640	16783594	+	RAMPAGE_only	5	5	22	0.983310	3.499228	chr17	16781277	16783989	LINE|L1|L1PA11	-	chr17	16720516	16796152	STRG.251701.5	+	16720516,16727526,16731799,16732537,16734689,16761424,16762312,16763964,16771976,16773496,16786947,16787934,16796042	16720658,16727740,16731983,16732666,16735643,16761718,16762533,16764175,16772019,16784480,16787122,16788135,16796152	0.954545
testis_male_adult_37_years	chr19	35597874	35597875	35597874	+	High_confidence	10	10	10	0.446959	2.921928	chr19	35597863	35598363	LTR|ERV1|LTR36	-	chr19	35597894	35601501	LOC102723617|NR_110750.1	+	35597894,35600640,35601304	35597957,35600754,35601501	1.000000
testis_male_adult_37_years	chr1	1655448	1655481	1655448	-	RAMPAGE_only	6	6	24	1.072701	4.334963	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	STRG.644.21	-	1641771,1641905,1642385,1645125,1649498,1652438,1655368,1657255,1658913	1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1658972	0.958333
testis_male_adult_37_years	chr14	72422013	72422025	72422024	-	High_confidence	3	3	11	0.491655	2.846439	chr14	72421935	72422277	LTR|ERVL-MaLR|THE1B	+	chr14	72421706	72422007	STRG.228372.2	-	72421706	72422007	0.636364
testis_male_adult_37_years	chrX	152457317	152457344	152457336	-	RAMPAGE_only	6	6	25	1.117397	3.913270	chrX	152457257	152457564	SINE|Alu|AluY	-	chrX	152167161	152451359	GABRA3|NM_000808.3	-	152167161,152189729,152197632,152208000,152224762,152255777,152284667,152345580,152364430,152451145	152168563,152189941,152197785,152208144,152224845,152255998,152284735,152345702,152364596,152451359	0.960000
testis_male_adult_37_years	chr1	33021373	33021429	33021386	-	RAMPAGE_only	3	3	14	0.625742	3.664498	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010630	33013287	AK2|ENST00000491241.1	-	33010630,33011447,33012073,33013206	33010833,33011710,33012122,33013287	0.714286
testis_male_adult_37_years	chr1	193102955	193102968	193102967	-	RAMPAGE_only	4	4	11	0.491655	2.721928	chr1	193102739	193103450	DNA|TcMar-Tigger|Tigger7	+	chr1	193096467	193105431	GLRX2|ENST00000367439.7	-	193096467,193097583,193101140,193105263	193096759,193097760,193101204,193105431	0.636364
testis_male_adult_37_years	chr5	120882669	120882690	120882674	-	High_confidence	4	4	12	0.536351	3.277613	chr5	120882298	120882779	LTR|ERVL|MER70A	-	chr5	120881728	120882663	STRG.100108.1	-	120881728	120882663	0.833333
testis_male_adult_37_years	chr2	63975579	63975593	63975579	-	High_confidence	6	6	16	0.715134	3.640224	chr2	63975185	63975865	LTR|ERV1|LTR8	+	chr2	63892900	63975602	VPS54|ENST00000354504.7	-	63892900,63897495,63899473,63912344,63912539,63913222,63914181,63916899,63919882,63920445,63921205,63933672,63942464,63944599,63949036,63962057,63965834,63968956,63972165,63974985	63893535,63897590,63899581,63912425,63912661,63913310,63914287,63916963,63919995,63920627,63921335,63934013,63942561,63944655,63949163,63962443,63965966,63968991,63972244,63975602	0.937500
testis_male_adult_37_years	chr2	65339055	65339085	65339055	-	RAMPAGE_only	2	2	9	0.402263	3.169925	chr2	65338266	65339718	Retroposon|SVA|SVA_D	+	chr2	65312992	65366650	SPRED2|ENST00000443619.6	-	65312992,65316733,65331986,65334604,65344718,65366589	65314169,65316883,65332051,65334773,65344896,65366650	0.888889
testis_male_adult_37_years	chr17	76570888	76570928	76570927	-	High_confidence	12	12	37	1.653748	4.686147	chr17	76570809	76571286	LTR|ERVL-MaLR|MLT1F1	+	chr17	76568716	76571142	ST6GALNAC2|ENST00000592979.1	-	76568716,76570564	76568894,76571142	0.594595
testis_male_adult_37_years	chr16	20674839	20674862	20674853	+	High_confidence	2	3	9	0.402263	2.500000	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.666667
testis_male_adult_37_years	chr20	4725080	4725516	4725499	+	RAMPAGE_only	83	139	1389	62.082593	6.454236	chr20	4725353	4725540	SINE|MIR|MIRb	-	chr20	4721909	4728460	PRND|ENST00000305817.2	+	4721909,4724540	4721969,4728460	0.998560
testis_male_adult_37_years	chr2	110181056	110181073	110181056	-	RAMPAGE_only	4	4	18	0.804526	3.836592	chr2	110180528	110183130	LINE|L1|L1PA10	+	chr2	110123707	110204972	NPHP1|ENST00000355301.8	-	110123707,110125636,110129185,110131678,110143541,110144492,110146752,110147915,110150181,110160126,110161602,110163047,110164687,110165051,110168451,110169805,110201420,110204899	110124063,110125681,110129259,110131791,110143641,110144569,110146835,110148026,110150256,110160255,110161697,110163132,110164730,110165155,110168553,110169998,110201494,110204972	0.722222
testis_male_adult_37_years	chr17	41871745	41871746	41871745	-	RAMPAGE_only	4	4	7	0.312871	2.584963	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.571429
testis_male_adult_37_years	chr4	185379587	185379619	185379618	-	High_confidence	5	5	9	0.402263	2.725481	chr4	185379591	185379800	SINE|MIR|MIR	-	chr4	185367062	185379018	LRP2BP|ENST00000510776.5	-	185367062,185370639,185372855,185374134,185374318,185375612,185376908	185367245,185370814,185373079,185374240,185374461,185375726,185379018	1.000000
testis_male_adult_37_years	chr19	2393149	2393150	2393149	+	High_confidence	879	886	924	41.299004	5.258456	chr19	2392567	2393567	LTR|ERV1|LTR12C	+	chr19	2393079	2408947	STRG.265579.1	+	2393079,2396555,2398794,2399017,2401974,2403081,2405373,2408355	2393531,2396666,2398862,2399193,2402016,2403195,2405545,2408947	0.906926
testis_male_adult_37_years	chr12	120810820	120810826	120810825	-	RAMPAGE_only	5	5	9	0.402263	2.641604	chr12	120810699	120810790	SINE|tRNA|LFSINE_Vert	-	chr12	120768957	120903370	SPPL3|ENST00000543608.5	-	120768957,120782654,120783673,120784473,120791468,120810808,120903315	120769059,120782767,120783752,120784593,120791557,120810886,120903370	0.666667
testis_male_adult_37_years	chr2	165093804	165093819	165093804	-	High_confidence	3	4	7	0.312871	2.521641	chr2	165093704	165093806	SINE|MIR|MIR	+	chr2	165092255	165093828	SCN3A|ENST00000465043.1	-	165092255,165093566	165092524,165093828	1.000000
testis_male_adult_37_years	chr7	92142954	92142955	92142954	-	High_confidence	223	223	230	10.280055	5.724127	chr7	92142542	92143888	LTR|ERV1|LTR12C	-	chr7	92131806	92142952	AC000120.2|ENST00000435873.1	-	92131806,92142462	92131872,92142952	0.952174
testis_male_adult_37_years	chr16	72172422	72172466	72172422	-	High_confidence	11	11	49	2.190099	4.987059	chr16	72172283	72172590	LTR|ERVL-MaLR|MLT1I	-	chr16	72119096	72172450	PMFBP1|NM_001160213.1	-	72119096,72119850,72122913,72123545,72124766,72125237,72125967,72128656,72129065,72130212,72130532,72132747,72136447,72136692,72139288,72140411,72150607,72154210,72164370,72164763,72171196,72172276	72119354,72120149,72122988,72123649,72124934,72125405,72126132,72128794,72129233,72130357,72130722,72132991,72136605,72136819,72139399,72140582,72150829,72154459,72164486,72164916,72171268,72172450	0.897959
testis_male_adult_37_years	chr13	111508626	111508644	111508643	+	High_confidence	4	4	11	0.491655	3.459432	chr13	111508279	111508761	LTR|ERV1|MER66B	-	chr13	111508420	111508874	STRG.221183.1	+	111508420	111508874	0.636364
testis_male_adult_37_years	chr3	194768667	194768689	194768677	+	High_confidence	4	4	14	0.625742	3.378783	chr3	194768611	194768719	LINE|L2|L2b	-	chr3	194768805	194779658	LINC01968|ENST00000455796.1	+	194768805,194769739,194772155,194779461	194768852,194769811,194772271,194779658	0.642857
testis_male_adult_37_years	chr10	27121399	27121426	27121399	-	RAMPAGE_only	4	4	30	1.340877	3.869331	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	0.933333
testis_male_adult_37_years	chr12	130506906	130506919	130506906	-	High_confidence	13	13	45	2.011315	4.907962	chr12	130506824	130507447	LTR|ERVL-MaLR|MLT1K	+	chr12	130431646	130506925	STRG.211264.4	-	130431646,130434733,130436841,130438364,130441847,130445159,130450199,130451194,130456495,130469019,130470692,130478911,130506647	130432321,130434880,130437291,130438516,130442660,130445269,130450276,130451340,130456700,130469169,130470743,130479016,130506925	0.644444
testis_male_adult_37_years	chr13	95784476	95784489	95784476	+	RAMPAGE_only	14	14	40	1.787836	4.634184	chr13	95784243	95784783	LTR|ERVL|MER68	-	chr13	95677157	95791843	DNAJC3|ENST00000376795.6	+	95677157,95709226,95723241,95725177,95760039,95760678,95763642,95763832,95785938,95787006,95790872	95677337,95709337,95723366,95725252,95760221,95760798,95763748,95763953,95786071,95787155,95791843	0.975000
testis_male_adult_37_years	chr2	184204338	184204349	184204348	-	RAMPAGE_only	24	24	57	2.547666	4.817551	chr2	184204273	184204571	SINE|Alu|AluY	-	chr2	184161053	184187792	STRG.41373.1	-	184161053,184187249,184187472	184161392,184187374,184187792	0.526316
testis_male_adult_37_years	chr8	11795578	11795579	11795578	+	High_confidence	1977	1987	2184	97.615827	5.575612	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.978480
testis_male_adult_37_years	chr1	199959655	199959686	199959685	-	High_confidence	15	15	56	2.502970	5.407575	chr1	199959486	199960727	LTR|ERV1|LTR12C	+	chr1	199947168	199960335	STRG.17680.3	-	199947168,199959254,199959448	199947684,199959327,199960335	0.660714
testis_male_adult_37_years	chr11	304396	304399	304398	+	RAMPAGE_only	10	14	19	0.849222	3.932138	chr11	304379	304657	LTR|ERV1|MER41E	-	chr11	307926	309392	IFITM2|ENST00000616316.1	+	307926,309012	308438,309392	0.789474
testis_male_adult_37_years	chr10	78424334	78424335	78424334	+	High_confidence	78	80	111	4.961244	5.443409	chr10	78424051	78424535	LTR|ERV1|LTR12_	+	chr10	78424343	78425014	STRG.176355.1	+	78424343	78425014	0.909910
testis_male_adult_37_years	chr20	22471537	22471548	22471547	-	High_confidence	5	6	18	0.804526	3.616875	chr20	22471304	22471719	LTR|ERVL-MaLR|MLT1C	-	chr20	22449641	22471557	AL133464.1|ENST00000634595.1	-	22449641,22453250,22462649,22467155,22467957,22468603,22471008	22449785,22453488,22462777,22467335,22468064,22468792,22471557	0.888889
testis_male_adult_37_years	chr7	20296639	20296644	20296639	+	High_confidence	3	3	9	0.402263	2.750000	chr7	20296154	20296865	DNA|TcMar-Tigger|MER44C	-	chr7	20296707	20311712	AC099342.1|ENST00000446399.5	+	20296707,20298281,20301011,20305791,20311034	20296759,20298397,20301057,20306023,20311712	0.777778
testis_male_adult_37_years	chr5	106205653	106205688	106205653	-	High_confidence	129	129	199	8.894482	5.794906	chr5	106205339	106206597	LTR|ERV1|LTR12C	-	chr5	106205314	106205663	STRG.98406.1	-	106205314	106205663	0.859296
testis_male_adult_37_years	chr16	57641604	57641609	57641608	+	High_confidence	7	7	17	0.759830	3.286896	chr16	57641565	57641864	SINE|Alu|AluSz6	-	chr16	57640964	57651468	ADGRG1|ENST00000563414.5	+	57640964,57641590,57650252,57651199	57641064,57641708,57650351,57651468	1.000000
testis_male_adult_37_years	chr11	107441572	107441602	107441601	-	RAMPAGE_only	4	5	11	0.491655	3.277613	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	1.000000
testis_male_adult_37_years	chr8	95993215	95993220	95993215	-	High_confidence	3	3	8	0.357567	2.521641	chr8	95993002	95993288	SINE|Alu|AluYc3	+	chr8	95941817	95993266	STRG.151624.1	-	95941817,95948333,95992994	95942204,95948390,95993266	0.500000
testis_male_adult_37_years	chr13	22728686	22728687	22728686	-	High_confidence	9	10	14	0.625742	3.546594	chr13	22728318	22728911	LTR|ERV1|LTR12_	-	chr13	22727923	22728660	STRG.212219.1	-	22727923	22728660	0.857143
testis_male_adult_37_years	chr12	95857454	95857458	95857457	+	RAMPAGE_only	7	9	13	0.581047	3.238901	chr12	95857404	95857614	LTR|ERV1|MER51A	+	chr12	95858927	95867053	SNRPF|ENST00000266735.9	+	95858927,95861167,95865323,95866004	95859076,95861293,95865388,95867053	0.846154
testis_male_adult_37_years	chr12	64130624	64130665	64130654	+	RAMPAGE_only	13	13	83	3.709759	4.326440	chr12	64130008	64131894	LTR|ERVL|HERVL-int	-	chr12	64127636	64142566	SRGAP1|ENST00000542841.1	+	64127636,64142294	64128200,64142566	0.759036
testis_male_adult_37_years	chr3	69999732	69999733	69999732	+	High_confidence	42	43	53	2.368882	5.508132	chr3	69999500	70000000	LTR|ERV1|LTR1A2	+	chr3	69999732	70014787	SAMMSON|ENST00000641286.1	+	69999732,70012356,70013519	69999867,70012598,70014787	0.773585
testis_male_adult_37_years	chr1	231317879	231317914	231317913	+	High_confidence	42	46	69	3.084017	5.229841	chr1	231317285	231318194	LTR|ERV1|LTR12D	+	chr1	231317317	231322318	STRG.20402.7	+	231317317	231322318	0.985507
testis_male_adult_37_years	chr5	17032016	17032017	17032016	-	High_confidence	440	443	463	20.694198	5.684248	chr5	17031596	17032956	LTR|ERV1|LTR12C	-	chr5	17025877	17032004	STRG.90355.1	-	17025877	17032004	0.948164
testis_male_adult_37_years	chr19	36703674	36703694	36703674	+	High_confidence	16	16	46	2.056011	4.613251	chr19	36697923	36704066	LINE|L1|L1PA3	-	chr19	36703680	36723346	ZNF567|ENST00000588311.5	+	36703680,36712385,36712780,36718947,36723188	36703736,36712512,36712867,36720561,36723346	0.978261
testis_male_adult_37_years	chr9	72114591	72114620	72114619	+	High_confidence	5	6	17	0.759830	3.875000	chr9	72114564	72114671	SINE|Alu|AluYh9	-	chr9	72114594	72252223	GDA|ENST00000545168.5	+	72114594,72195499,72202570,72210686,72213885,72219478,72223119,72225676,72227942,72231113,72241151,72245147,72247405,72248271	72114833,72195588,72202742,72210774,72213991,72219506,72223227,72225784,72228040,72231181,72241298,72245278,72247433,72252223	0.588235
testis_male_adult_37_years	chr12	10702260	10702261	10702260	-	High_confidence	6	6	7	0.312871	2.584963	chr12	10702238	10702535	SINE|Alu|AluSz	+	chr12	10699316	10702475	YBX3|ENST00000540975.5	-	10699316,10701253,10701959,10702411	10699654,10701353,10702134,10702475	0.857143
testis_male_adult_37_years	chr17	68821081	68821089	68821081	-	High_confidence	8	9	14	0.625742	3.546594	chr17	68820904	68821323	LTR|ERVL|LTR16A1	+	chr17	68819260	68821430	STRG.256616.1	-	68819260	68821430	0.571429
testis_male_adult_37_years	chr6	150069540	150069592	150069540	-	High_confidence	5	5	19	0.849222	4.037401	chr6	150069423	150069517	SINE|MIR|MIR1_Amn	-	chr6	150061045	150069147	ULBP3|NM_024518.2	-	150061045,150064584,150065397,150065898,150068978	150063351,150064713,150065673,150066162,150069147	0.842105
testis_male_adult_37_years	chr13	26013342	26013374	26013349	+	High_confidence	55	56	111	4.961244	5.389854	chr13	26013392	26013701	SINE|Alu|AluSq2	+	chr13	26012911	26025851	STRG.212519.9	+	26012911,26019887	26013443,26025851	0.990991
testis_male_adult_37_years	chr4	168263670	168263673	168263670	-	High_confidence	9	9	22	0.983310	4.459432	chr4	168263492	168263856	LTR|ERVL-MaLR|MLT1A0	+	chr4	168252573	168263671	DDX60|ENST00000505393.1	-	168252573,168255710,168260864,168261999,168262682,168263527	168252656,168255869,168260989,168262128,168262787,168263671	1.000000
testis_male_adult_37_years	chr10	125679841	125679850	125679841	-	High_confidence	3	3	13	0.581047	3.418296	chr10	125677981	125679844	LINE|L1|L1MA3	-	chr10	125576633	125679858	STRG.181341.2	-	125576633,125661020,125661845,125679608	125576874,125661101,125661977,125679858	0.923077
testis_male_adult_37_years	chrX	101293057	101293083	101293057	-	High_confidence	11	11	47	2.100707	5.045301	chrX	101292998	101293671	LINE|RTE-X|L4_A_Mam	+	chrX	101268252	101293057	TAF7L|ENST00000372907.7	-	101268252,101275221,101275999,101276306,101277605,101278048,101278993,101281719,101282326,101283449,101286574,101287477,101292789	101269237,101275281,101276112,101276528,101277719,101278121,101279035,101281775,101282453,101283583,101286653,101287545,101293057	0.914894
testis_male_adult_37_years	chr5	117454948	117454953	117454949	+	High_confidence	15	24	39	1.743140	4.616349	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.589744
testis_male_adult_37_years	chr21	22190703	22190717	22190705	-	High_confidence	9	13	32	1.430269	3.679687	chr21	22190554	22190821	SINE|Alu|AluY	+	chr21	22187151	22190703	STRG.279349.3	-	22187151	22190703	0.812500
testis_male_adult_37_years	chr3	15571207	15571224	15571207	-	RAMPAGE_only	5	5	16	0.715134	3.006239	chr3	15570980	15571256	SINE|Alu|AluJr	-	chr3	15560746	15601185	STRG.49888.13	-	15560746,15564550,15567843,15568431,15571667,15573158,15574976,15579909,15580614,15585247,15586524,15589539,15591599,15596383,15601089	15563544,15564658,15568002,15568586,15571769,15573242,15575082,15580045,15582989,15585342,15586602,15589612,15591680,15596424,15601185	0.750000
testis_male_adult_37_years	chr8	143109096	143109137	143109096	-	High_confidence	4	4	26	1.162093	3.715454	chr8	143108956	143109554	LTR|ERV1|MER4B-int	-	chr8	143094298	143109128	STRG.155938.2	-	143094298,143108984	143094583,143109128	0.538462
testis_male_adult_37_years	chr1	29047434	29047454	29047434	+	RAMPAGE_only	2	2	9	0.402263	2.725481	chr1	29047240	29047553	SINE|Alu|AluJo	-	chr1	29053163	29097904	EPB41|ENST00000646871.1	+	29053163,29058588,29064981,29096154,29097806	29053312,29058645,29065158,29096604,29097904	1.000000
testis_male_adult_37_years	chr13	95784647	95784664	95784647	+	RAMPAGE_only	3	3	11	0.491655	2.721928	chr13	95784243	95784783	LTR|ERVL|MER68	-	chr13	95677157	95791843	DNAJC3|ENST00000376795.6	+	95677157,95709226,95723241,95725177,95760039,95760678,95763642,95763832,95785938,95787006,95790872	95677337,95709337,95723366,95725252,95760221,95760798,95763748,95763953,95786071,95787155,95791843	0.909091
testis_male_adult_37_years	chr9	98428592	98428620	98428592	-	High_confidence	10	12	36	1.609052	3.453672	chr9	98428567	98428868	LTR|ERVL-MaLR|MLT1K	+	chr9	98428160	98428610	STRG.164849.5	-	98428160	98428610	0.694444
testis_male_adult_37_years	chr5	32107349	32107352	32107349	+	High_confidence	4	4	12	0.536351	3.095795	chr5	32107357	32107571	SINE|Alu|AluJr	+	chr5	32107320	32108461	PDZD2|ENST00000510285.1	+	32107320,32107968	32107460,32108461	0.916667
testis_male_adult_37_years	chr10	112372396	112372397	112372396	+	RAMPAGE_only	31	31	35	1.564356	4.278352	chr10	112371581	112372669	LTR|ERV1|LTR12C	+	chr10	112370998	112417938	STRG.180240.7	+	112370998,112374085,112394917,112398900,112404510,112404704,112408421,112409506,112410462,112410583,112411455,112411901,112413172,112416887,112417845	112372826,112374269,112395102,112399009,112404575,112404806,112408521,112409685,112410495,112410635,112411529,112411979,112413307,112417022,112417938	0.971429
testis_male_adult_37_years	chr4	163166953	163167000	163166967	+	High_confidence	2	2	13	0.581047	3.188722	chr4	163167010	163167299	SINE|Alu|AluSg	+	chr4	163166394	163170296	STRG.85376.1	+	163166394	163170296	0.846154
testis_male_adult_37_years	chr15	93856537	93856547	93856537	+	High_confidence	2	2	7	0.312871	2.584963	chr15	93856478	93856622	SINE|MIR|MIRb	+	chr15	93856559	93878356	LOC101927153|NR_120321.1	+	93856559,93865373,93869690,93878033	93856596,93865648,93869833,93878356	0.571429
testis_male_adult_37_years	chr12	109053951	109053984	109053983	-	High_confidence	2	3	8	0.357567	3.000000	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052040	109053965	USP30-AS1|NR_038996.1	-	109052040,109053685	109052738,109053965	0.625000
testis_male_adult_37_years	chr1	185176635	185176656	185176655	+	RAMPAGE_only	4	5	15	0.670438	3.640224	chr1	185176702	185177001	SINE|Alu|AluY	+	chr1	185157481	185238138	STRG.16145.3	+	185157481,185160832,185166571,185168339,185174371,185180390,185181945,185184242,185184742,185190548,185202653,185204699,185206624,185214506,185221848,185231576	185157626,185160925,185166652,185168398,185175113,185180450,185182057,185184344,185184931,185190642,185202799,185204863,185206763,185214655,185222036,185238138	0.666667
testis_male_adult_37_years	chr15	49480539	49480556	49480539	+	RAMPAGE_only	4	4	9	0.402263	2.947703	chr15	49480474	49480782	SINE|Alu|AluSx1	-	chr15	49434395	49484520	FGF7|ENST00000560704.1	+	49434395,49483150,49484309	49434653,49483254,49484520	1.000000
testis_male_adult_37_years	chr2	107542735	107542748	107542747	+	High_confidence	8	8	24	1.072701	4.095795	chr2	107542342	107542809	LTR|ERVL|MER70A	-	chr2	107542748	107555639	LINC01886|ENST00000439893.1	+	107542748,107555132	107542821,107555639	0.916667
testis_male_adult_37_years	chr1	223759086	223759087	223759086	+	High_confidence	7	7	9	0.402263	2.750000	chr1	223759082	223759137	SINE|Alu|AluJr	-	chr1	223758225	223776018	CAPN2|ENST00000487223.5	+	223758225,223761580,223762185,223764149,223766366,223769840,223770446,223771808,223772180,223774833	223759481,223761617,223762251,223764207,223766431,223769909,223770525,223771925,223772239,223776018	0.888889
testis_male_adult_37_years	chr13	27680549	27680585	27680584	-	High_confidence	12	23	41	1.832532	5.113650	chr13	27680543	27681024	LTR|ERVL|ERVL-E-int	-	chr13	27667539	27680566	AL136439.1|ENST00000611364.1	-	27667539,27678353,27680513	27667752,27678949,27680566	0.926829
testis_male_adult_37_years	chr11	106555866	106555868	106555866	+	High_confidence	6	9	10	0.446959	2.947703	chr11	106555619	106556328	LTR|ERV1|LTR12_	+	chr11	106555914	106586245	STRG.193545.1	+	106555914,106585927	106556368,106586245	0.800000
testis_male_adult_37_years	chr11	118792827	118792848	118792827	-	RAMPAGE_only	3	3	7	0.312871	2.807355	chr11	118792810	118793159	LTR|ERV1|MER89	+	chr11	118747762	118791263	DDX6|NM_004397.5	-	118747762,118754704,118755401,118756259,118757170,118758773,118759921,118763211,118765208,118768222,118779631,118781120,118786051,118791097	118752097,118754887,118755503,118756323,118757287,118758902,118760044,118763306,118765355,118768352,118779736,118781184,118786518,118791263	1.000000
testis_male_adult_37_years	chr1	51102227	51102242	51102235	+	High_confidence	16	16	52	2.324186	4.946552	chr1	51102092	51102324	LTR|ERVL-MaLR|MLT1J1	-	chr1	51102233	51148086	C1orf185|ENST00000371759.6	+	51102233,51112463,51118665,51145723,51147466	51102249,51112569,51118801,51145760,51148086	0.653846
testis_male_adult_37_years	chr6	138919380	138919381	138919380	-	RAMPAGE_only	6	6	9	0.402263	2.750000	chr6	138919030	138919931	LINE|L2|L2a	+	chr6	138907534	138944545	STRG.121992.9	-	138907534,138908667,138911275,138912764,138914696,138915857,138921036,138926400,138929976,138941334,138943512,138943852,138944497	138907600,138908816,138911371,138912950,138914761,138920316,138921124,138926481,138930098,138941489,138943576,138944015,138944545	0.888889
testis_male_adult_37_years	chr15	78660641	78660671	78660670	+	High_confidence	6	7	20	0.893918	3.826875	chr15	78660457	78660683	SINE|MIR|MIRb	-	chr15	78660658	78722985	STRG.238219.1	+	78660658,78692681,78703847,78705943,78707278,78719304,78719555	78661534,78692846,78703972,78706062,78707390,78719360,78722985	0.700000
testis_male_adult_37_years	chr13	43055406	43055407	43055406	+	High_confidence	108	110	148	6.614992	5.622933	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43055091	43114127	STRG.213703.1	+	43055091,43059393,43065685,43068929,43078611,43085767,43107177	43058862,43062295,43065737,43069003,43078688,43085838,43114127	0.952703
testis_male_adult_37_years	chr16	47451674	47451696	47451674	-	RAMPAGE_only	4	4	14	0.625742	3.546594	chr16	47451607	47451899	LTR|ERVL-MaLR|MLT1I	+	chr16	47365570	47452757	ITFG1|ENST00000569551.6	-	47365570,47375875,47428803,47451395,47452732	47365869,47375940,47428898,47451470,47452757	0.714286
testis_male_adult_37_years	chr3	189596745	189596746	189596745	+	High_confidence	724	729	803	35.890801	5.778496	chr3	189595942	189597160	LTR|ERV1|LTR12C	+	chr3	189596736	189897248	STRG.67841.1	+	189596736,189623192,189737739,189738641,189808271,189864231,189866681,189867832,189868579,189869323,189872858,189886393,189889339,189890788,189894205	189597238,189623317,189737868,189738774,189808526,189864418,189866797,189867942,189868716,189869406,189872995,189886551,189889484,189890882,189897248	0.981320
testis_male_adult_37_years	chr7	103274459	103274642	103274575	-	RAMPAGE_only	9	9	97	4.335501	5.212516	chr7	103274079	103275487	LTR|ERV1|LTR12C	-	chr7	103175132	103280219	DPY19L2P2|ENST00000439473.5	-	103175132,103184001,103185437,103195439,103197186,103198594,103210266,103212160,103214000,103216462,103225104,103233799,103234648,103237755,103238802,103240561,103242988,103254781,103257603,103271731,103274069,103277613,103279832	103175411,103184127,103185537,103195614,103197306,103198619,103210313,103212232,103214102,103216543,103225164,103233886,103234726,103237855,103238871,103240653,103243046,103254875,103257724,103271869,103275627,103277638,103280219	0.938144
testis_male_adult_37_years	chr10	114935740	114935798	114935758	+	RAMPAGE_only	6	6	32	1.430269	3.517766	chr10	114935747	114935869	LTR|ERVL-MaLR|MSTB	-	chr10	114938192	114977680	TRUB1|NM_139169.4	+	114938192,114942644,114951093,114959725,114970367,114972134,114974328,114975122	114938539,114942743,114951149,114959807,114970440,114972274,114974385,114977680	0.937500
testis_male_adult_37_years	chr8	25833440	25833441	25833440	-	High_confidence	9	9	11	0.491655	3.095795	chr8	25833424	25833519	DNA|hAT-Blackjack|MER94B	+	chr8	25820974	25833464	AC009623.3|ENST00000649347.1	-	25820974,25832799,25833246	25822002,25832935,25833464	0.636364
testis_male_adult_37_years	chr12	643627	643648	643627	-	High_confidence	6	10	30	1.340877	4.681728	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.666667
testis_male_adult_37_years	chr1	50321116	50321155	50321123	-	High_confidence	20	20	93	4.156718	5.940394	chr1	50320951	50321194	SINE|MIR|MIR	-	chr1	50317212	50321120	AL596275.2|ENST00000641188.1	-	50317212,50318281,50321016	50317658,50318406,50321120	0.591398
testis_male_adult_37_years	chr11	36325007	36325030	36325018	-	RAMPAGE_only	8	8	24	1.072701	3.334209	chr11	36324976	36325756	LTR|ERV1|LTR17	-	chr11	36321157	36323440	AC087277.1|ENST00000529910.1	-	36321157,36323351	36321603,36323440	0.875000
testis_male_adult_37_years	chr20	4740450	4740482	4740457	-	High_confidence	30	39	153	6.838471	6.008903	chr20	4740419	4740587	LINE|L2|L2b	+	chr20	4731281	4740668	PRNT|ENST00000326539.6	-	4731281,4740139	4733085,4740668	0.849673
testis_male_adult_37_years	chr1	236275678	236275712	236275711	-	RAMPAGE_only	3	3	8	0.357567	2.750000	chr1	236275574	236275726	LTR|ERVL|MER21C	-	chr1	236236331	236281601	ERO1B|ENST00000366589.1	-	236236331,236243421,236249884,236252049,236253421,236269874,236281466	236236398,236243495,236249967,236252091,236253505,236269994,236281601	1.000000
testis_male_adult_37_years	chr13	87810512	87810540	87810520	-	RAMPAGE_only	2	2	10	0.446959	3.169925	chr13	87810378	87810512	LTR|ERV1|HUERS-P2-int	-	chr13	87786832	87789381	STRG.218989.1	-	87786832	87789381	0.600000
testis_male_adult_37_years	chr12	70468078	70468123	70468078	+	High_confidence	10	10	44	1.966619	4.817053	chr12	70467961	70468294	LTR|ERV1|MER61A	+	chr12	70468079	70538060	AC025569.1|ENST00000549460.5	+	70468079,70470212,70520198,70522523,70527674,70538049	70468327,70470308,70520267,70522630,70527738,70538060	0.522727
testis_male_adult_37_years	chr7	20190011	20190033	20190011	-	RAMPAGE_only	2	2	8	0.357567	2.521641	chr7	20189824	20190152	LTR|ERVL-MaLR|MLT1A0	-	chr7	20140916	20185078	MACC1|ENST00000589011.1	-	20140916,20154192,20158203,20161747,20184988	20141158,20154381,20160245,20161870,20185078	0.500000
testis_male_adult_37_years	chr9	123518733	123518741	123518740	-	RAMPAGE_only	24	24	53	2.368882	4.998563	chr9	123518675	123519094	LINE|L2|L2a	+	chr9	123437646	123462023	DENND1A|ENST00000479305.5	-	123437646,123440359,123450692,123452275,123454738,123457347,123457792,123461913	123437832,123440491,123450749,123452347,123454779,123457435,123457897,123462023	0.547170
testis_male_adult_37_years	chr12	105233155	105233220	105233219	-	High_confidence	14	20	52	2.324186	5.455153	chr12	105233175	105233274	LINE|L2|L2c	+	chr12	105177109	105233154	APPL2|ENST00000547809.5	-	105177109,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105233090	105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105233154	0.807692
testis_male_adult_37_years	chr1	145839475	145839484	145839475	+	High_confidence	16	18	36	1.609052	4.418201	chr1	145839460	145839751	SINE|Alu|AluJb	+	chr1	145839514	145839991	POLR3C|ENST00000479819.1	+	145839514,145839889	145839784,145839991	0.694444
testis_male_adult_37_years	chr11	49002545	49002557	49002545	-	RAMPAGE_only	4	4	9	0.402263	2.750000	chr11	49002458	49002789	SINE|Alu|AluYi6	-	chr11	48985867	48991881	TRIM53CP|ENST00000531490.2	-	48985867,48987455,48988416,48989140,48991089,48991470	48986366,48987553,48988439,48989371,48991185,48991881	0.555556
testis_male_adult_37_years	chr13	22040816	22040845	22040816	+	High_confidence	11	12	54	2.413578	5.194431	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.777778
testis_male_adult_37_years	chr10	72008872	72008892	72008891	+	RAMPAGE_only	3	3	7	0.312871	2.584963	chr10	72008852	72009066	DNA|hAT|MamRep38	+	chr10	71970553	72013564	STRG.175911.1	+	71970553,72005735,72007171,72011555	71970714,72005982,72011468,72013564	0.857143
testis_male_adult_37_years	chr6	7426871	7426875	7426874	+	High_confidence	79	84	141	6.302121	5.913751	chr6	7425609	7427287	LTR|ERV1|LTR12C	+	chr6	7426875	7453160	STRG.107591.1	+	7426875,7452310	7426931,7453160	0.539007
testis_male_adult_37_years	chr12	9569002	9569056	9569055	+	RAMPAGE_only	14	14	47	2.100707	5.112996	chr12	9568603	9569205	LTR|ERV1|HERVE-int	-	chr12	9563963	9633828	AC092821.3|ENST00000642112.1	+	9563963,9567489,9569057,9570762,9571460,9573002,9573465,9584105,9606352,9607670,9617243,9622318,9633424	9565303,9567567,9569202,9570892,9571573,9573093,9573534,9584164,9606456,9607802,9617351,9622436,9633828	0.744681
testis_male_adult_37_years	chr6	165885388	165885409	165885388	-	High_confidence	5	5	26	1.162093	4.392747	chr6	165885179	165885534	LTR|ERVL-MaLR|THE1D	-	chr6	165884704	165885419	STRG.124271.1	-	165884704	165885419	0.730769
testis_male_adult_37_years	chr7	47973357	47973379	47973371	-	RAMPAGE_only	12	13	39	1.743140	4.787144	chr7	47973277	47973434	DNA|hAT-Charlie|MER5A1	+	chr7	47927902	47978534	STRG.130642.1	-	47927902,47931103,47931935,47936845,47940192,47943395,47948396,47963120,47964564,47965299,47967805,47969218,47975612,47976729,47978416	47929526,47931321,47932056,47936958,47940317,47943511,47948499,47963242,47964632,47965438,47967925,47969318,47975687,47976837,47978534	0.820513
testis_male_adult_37_years	chr6	11417333	11417377	11417362	+	High_confidence	49	51	194	8.671003	6.721387	chr6	11416082	11417550	LTR|ERV1|LTR12C	-	chr6	11417349	11487866	STRG.108226.3	+	11417349,11487564	11417579,11487866	0.541237
testis_male_adult_37_years	chr11	126106894	126106907	126106906	+	High_confidence	15	16	30	1.340877	4.307355	chr11	126106829	126107257	LTR|ERVL-MaLR|MLT1E2	+	chr11	126106871	126107337	STRG.195821.1	+	126106871	126107337	0.633333
testis_male_adult_37_years	chr4	22635403	22635404	22635403	+	High_confidence	49	57	71	3.173408	4.966653	chr4	22634529	22635719	LTR|ERV1|LTR12E	+	chr4	22635416	22674915	STRG.72154.5	+	22635416,22665129,22674813	22635908,22665263,22674915	0.929577
testis_male_adult_37_years	chr16	56188085	56188101	56188100	-	RAMPAGE_only	5	5	9	0.402263	2.725481	chr16	56188096	56188140	DNA|hAT-Charlie|MER5B	-	chr16	56143698	56189568	AC007495.1|ENST00000565155.1	-	56143698,56151689,56187602,56189501	56144012,56151769,56187700,56189568	0.888889
testis_male_adult_37_years	chr18	69643680	69643691	69643680	+	RAMPAGE_only	22	22	47	2.100707	4.865635	chr18	69643182	69644736	LINE|L1|L1MD2	-	chr18	69677733	69739160	DOK6|ENST00000582992.1	+	69677733,69698403,69738964	69677853,69698593,69739160	0.531915
testis_male_adult_37_years	chr15	99013864	99013889	99013864	-	RAMPAGE_only	3	3	13	0.581047	3.546594	chr15	99013409	99013877	LTR|ERVK|LTR3B_	-	chr15	98970336	98971801	STRG.240952.2	-	98970336	98971801	0.615385
testis_male_adult_37_years	chr15	81457201	81457202	81457201	+	RAMPAGE_only	14	15	17	0.759830	3.969816	chr15	81456820	81457383	LTR|ERV1|LTR12F	+	chr15	81454730	81458146	STRG.238662.1	+	81454730	81458146	0.705882
testis_male_adult_37_years	chr5	105392216	105392232	105392216	+	High_confidence	5	5	21	0.938614	3.576618	chr5	105391971	105393225	LTR|ERV1|LTR2752	-	chr5	105392417	105392742	STRG.98664.1	+	105392417	105392742	0.619048
testis_male_adult_37_years	chr14	81249964	81249965	81249964	-	RAMPAGE_only	13	13	15	0.670438	3.521641	chr14	81249639	81250202	LTR|ERVL-MaLR|MLT1G3	-	chr14	81197226	81221377	GTF2A1|ENST00000556268.1	-	81197226,81201593,81203899,81216412,81221143	81197484,81201658,81204104,81216514,81221377	0.666667
testis_male_adult_37_years	chr16	20674762	20674805	20674774	+	High_confidence	13	14	83	3.709759	5.593586	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.614458
testis_male_adult_37_years	chr9	72363564	72363576	72363575	-	High_confidence	6	10	18	0.804526	3.836592	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.500000
testis_male_adult_37_years	chr17	52828752	52828787	52828755	-	High_confidence	42	43	187	8.358132	6.517451	chr17	52828582	52828917	LTR|ERV1|MER61A	-	chr17	52757979	52828781	STRG.255032.2	-	52757979,52828549	52773352,52828781	0.513369
testis_male_adult_37_years	chrX	9534926	9534942	9534941	+	RAMPAGE_only	9	9	27	1.206789	4.293661	chrX	9534975	9535052	SINE|MIR|MIRb	+	chrX	9531005	9719723	TBL1X|ENST00000646640.1	+	9531005,9636281,9640272,9653544,9654214,9684042,9688016,9691578,9692112,9693148,9693321,9697368,9704992,9709247,9709632,9711610,9714901,9716219	9531088,9637918,9640360,9653689,9654322,9684188,9688275,9691711,9692254,9693212,9693419,9697429,9705114,9709322,9709760,9711776,9715003,9719723	0.555556
testis_male_adult_37_years	chr17	4656059	4656062	4656061	-	High_confidence	106	159	166	7.419518	5.087211	chr17	4655641	4657054	LTR|ERV1|LTR12C	-	chr17	4639437	4656049	STRG.249751.2	-	4639437,4641516,4642222,4654143,4655370	4639631,4641676,4642286,4654258,4656049	0.945783
testis_male_adult_37_years	chr1	204017452	204017487	204017452	+	High_confidence	6	6	21	0.938614	3.748995	chr1	204017390	204017768	LTR|ERVL-MaLR|THE1C	+	chr1	204017340	204029538	STRG.18045.1	+	204017340,204028464	204017686,204029538	0.619048
testis_male_adult_37_years	chr15	55487450	55487485	55487450	+	High_confidence	17	21	39	1.743140	4.548097	chr15	55487091	55487786	LTR|ERV1|LTR12	+	chr15	55487460	55493244	STRG.235917.1	+	55487460,55493050	55487710,55493244	0.948718
testis_male_adult_37_years	chr22	42644615	42644634	42644621	-	High_confidence	18	19	98	4.380197	5.303023	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	1.000000
testis_male_adult_37_years	chr13	90740437	90740462	90740437	+	High_confidence	4	4	8	0.357567	2.500000	chr13	90740119	90740494	LTR|ERV1|MER57C1	-	chr13	90740877	90741089	STRG.219358.1	+	90740877	90741089	0.500000
testis_male_adult_37_years	chr3	52644703	52644719	52644718	-	RAMPAGE_only	2	2	7	0.312871	2.584963	chr3	52644388	52644682	SINE|Alu|AluSc	-	chr3	52586429	52678567	PBRM1|ENST00000446103.5	-	52586429,52587352,52589069,52603520,52609312,52615350,52617261,52624896,52627272,52628893,52634601,52641953,52643247,52644703,52648343,52651741,52658198,52662132,52668497,52678499	52586688,52587510,52589252,52603732,52609955,52615456,52617538,52624941,52627370,52629035,52634815,52642045,52643343,52644789,52648442,52651810,52658315,52662276,52668645,52678567	0.857143
testis_male_adult_37_years	chr8	130386876	130386888	130386876	-	High_confidence	79	79	239	10.682318	6.328864	chr8	130386773	130386887	DNA?|DNA?|MER131	+	chr8	130214644	130386877	ASAP1|ENST00000521426.5	-	130214644,130236921,130358016,130361669,130386670	130214701,130236994,130358143,130361771,130386877	0.543933
testis_male_adult_37_years	chr11	134287085	134287103	134287102	+	High_confidence	24	28	65	2.905233	5.635855	chr11	134286878	134287175	SINE|Alu|AluY	+	chr11	134287116	134319558	GLB1L3|ENST00000486034.5	+	134287116,134288797,134292131,134293144,134307123,134309625,134312348,134312815,134313940,134314329,134318630,134318876	134287327,134288890,134292213,134293209,134307208,134311170,134312489,134312887,134314028,134314441,134318747,134319558	0.569231
testis_male_adult_37_years	chr20	10431908	10431933	10431908	-	High_confidence	3	3	12	0.536351	3.251629	chr20	10431809	10431944	LINE|L2|L2a	+	chr20	10405183	10431922	MKKS|ENST00000399054.6	-	10405183,10407615,10408627,10412529,10420527,10431683	10405687,10407726,10408803,10413931,10420758,10431922	0.750000
testis_male_adult_37_years	chr10	86441381	86441404	86441381	-	RAMPAGE_only	3	3	7	0.312871	2.521641	chr10	86441373	86441491	LTR|ERVL-MaLR|MLT1L	+	chr10	86435255	86444032	WAPL|ENST00000484070.1	-	86435255,86437919,86443274	86437608,86438015,86444032	0.714286
testis_male_adult_37_years	chr19	51599285	51599286	51599285	+	High_confidence	45	45	47	2.100707	4.924969	chr19	51598978	51599473	LTR|ERV1|LTR12	+	chr19	51599288	51600470	AC018755.1|ENST00000601315.1	+	51599288	51600470	0.893617
testis_male_adult_37_years	chr2	82326555	82326593	82326574	+	High_confidence	5	5	24	1.072701	4.277613	chr2	82325289	82326760	LTR|ERV1|LTR12C	-	chr2	82326127	82327558	STRG.32189.1	+	82326127	82327558	0.500000
testis_male_adult_37_years	chr1	67141700	67141756	67141745	-	High_confidence	85	94	510	22.794905	6.276750	chr1	67141478	67141745	SINE|Alu|AluJr	+	chr1	67092396	67141930	STRG.6668.7	-	67092396,67096251,67115351,67127165,67131141,67141613	67093604,67096321,67125909,67127257,67131227,67141930	0.966667
testis_male_adult_37_years	chr18	44579952	44579960	44579959	-	High_confidence	4	5	12	0.536351	3.277613	chr18	44579900	44580009	LINE|L2|L2a	-	chr18	44577979	44579840	STRG.261528.1	-	44577979,44579490	44578263,44579840	0.916667
testis_male_adult_37_years	chr10	35444663	35444692	35444691	+	RAMPAGE_only	4	4	8	0.357567	2.807355	chr10	35444557	35444732	DNA|TcMar-Tigger|Tigger3b	-	chr10	35439610	35553183	STRG.173017.39	+	35439610,35455356,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35444785,35455463,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.625000
testis_male_adult_37_years	chr2	19469331	19469349	19469348	+	High_confidence	4	4	11	0.491655	3.321928	chr2	19468897	19469356	LTR|ERVL-MaLR|MLT1G1	-	chr2	19469020	19505808	LINC01808|ENST00000641932.1	+	19469020,19475450,19479096,19480317,19487311,19488367,19505359	19469430,19475612,19479284,19480425,19487515,19488489,19505808	0.727273
testis_male_adult_37_years	chr19	4304499	4304520	4304519	-	High_confidence	5	5	9	0.402263	2.500000	chr19	4304380	4304483	SINE|MIR|MIRc	-	chr19	4304131	4304576	STRG.265161.1	-	4304131	4304576	0.777778
testis_male_adult_37_years	chr10	125574258	125574263	125574262	-	High_confidence	15	15	23	1.028006	4.277613	chr10	125573891	125574385	LTR|ERVL-MaLR|MLT1D	-	chr10	125573575	125574293	STRG.181335.1	-	125573575	125574293	0.913043
testis_male_adult_37_years	chr4	82469968	82469981	82469980	+	High_confidence	4	4	8	0.357567	2.807355	chr4	82469889	82470376	LTR|ERVL-MaLR|MLT1G3	+	chr4	82469889	82470317	STRG.77075.1	+	82469889	82470317	0.500000
testis_male_adult_37_years	chr9	96875541	96875589	96875588	-	High_confidence	15	15	53	2.368882	5.109904	chr9	96875295	96875538	SINE|MIR|MIRb	-	chr9	96844945	96875623	ZNF782|ENST00000498811.1	-	96844945,96851946,96852852,96860240,96861527,96875467	96845016,96852005,96853014,96860414,96861603,96875623	0.528302
testis_male_adult_37_years	chr8	140262707	140262713	140262707	-	High_confidence	8	11	22	0.983310	3.913977	chr8	140262666	140262789	LINE|L2|L2c	+	chr8	140215909	140262730	TRAPPC9|ENST00000518839.1	-	140215909,140221458,140252776,140262606	140216054,140221583,140252929,140262730	0.500000
testis_male_adult_37_years	chr1	218043486	218043516	218043504	+	High_confidence	3	4	16	0.715134	3.405639	chr1	218043544	218043704	LINE|L2|L2a	+	chr1	218043504	218059140	LOC101929631|NR_110794.1	+	218043504,218046133,218051154,218058733	218044597,218046253,218051262,218059140	0.875000
testis_male_adult_37_years	chr6	45937523	45937563	45937523	-	High_confidence	5	5	11	0.491655	2.846439	chr6	45937437	45937529	SINE|MIR|MIRb	-	chr6	45903065	45937546	CLIC5|ENST00000484572.2	-	45903065,45913777,45914227,45920650,45937404	45903255,45913812,45914547,45920689,45937546	0.545455
testis_male_adult_37_years	chr14	64044723	64044724	64044723	+	RAMPAGE_only	6	6	8	0.357567	2.750000	chr14	64044560	64044930	LTR|ERVL-MaLR|THE1B	+	chr14	63909097	64225564	SYNE2|ENST00000554584.5	+	63909097,63940613,63941694,63941884,63942050,63949824,63954718,63961524,63963898,63967708,63976562,63977904,63978851,63980653,63980985,63982629,63983736,63986455,63990410,63990941,63993834,63995043,63996946,63997300,63998218,63998913,64000561,64001933,64002719,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024256,64024911,64025129,64026578,64027483,64029894,64031015,64034493,64047999,64049610,64051556,64055943,64062750,64065431,64070644,64073967,64075944,64078465,64080455,64081442,64087670,64089573,64090865,64093348,64097948,64098746,64101985,64107490,64113340,64119426,64120926,64122011,64125128,64126326,64126597,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64167232,64167494,64168876,64170227,64173898,64174943,64177357,64188549,64188859,64190070,64190601,64190915,64202186,64202800,64208757,64209427,64209950,64211960,64212810,64214193,64216247,64219207,64220436,64221575,64223188,64224460,64224982,64225318	63909227,63940675,63941790,63941962,63942143,63950006,63954915,63961625,63964000,63967846,63976727,63978017,63979014,63980732,63981173,63982794,63983886,63986617,63990569,63991115,63993969,63995202,63997158,63997391,63998328,63999040,64000719,64002081,64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64022863,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64034592,64048155,64049876,64053657,64056266,64062895,64065650,64070910,64074136,64076100,64078606,64080638,64081580,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64125210,64126479,64126807,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64167387,64167639,64168971,64170321,64174009,64175138,64177483,64188708,64189009,64190237,64190614,64191120,64202265,64202963,64208945,64209578,64210124,64212098,64212954,64214470,64216424,64219410,64220637,64221704,64223380,64224547,64225045,64225564	0.875000
testis_male_adult_37_years	chr1	73607281	73607345	73607344	-	High_confidence	9	9	40	1.787836	4.089004	chr1	73607236	73607377	SINE|Alu|AluYc	+	chr1	73583255	73607521	STRG.7135.1	-	73583255,73602670,73607090	73583328,73602821,73607521	0.650000
testis_male_adult_37_years	chr11	116936971	116937005	116937004	-	RAMPAGE_only	6	7	22	0.983310	3.784184	chr11	116936835	116937160	LINE|L2|L2c	+	chr11	116868791	116957044	SIK3|ENST00000413553.1	-	116868791,116873480,116873902,116875157,116875373,116875865,116876252,116876923,116896252,116897192,116927218,116954043,116956947	116870401,116873636,116874056,116875267,116875451,116876009,116876363,116877042,116896376,116897317,116927380,116954107,116957044	0.590909
testis_male_adult_37_years	chr5	14578247	14578248	14578247	+	High_confidence	104	104	108	4.827156	4.892883	chr5	14577095	14578661	LTR|ERV1|LTR12C	+	chr5	14578223	14617913	STRG.90209.1	+	14578223,14600964,14601212,14601350,14602182,14607329,14608747,14610140,14614530	14581958,14601124,14601244,14601442,14602332,14607458,14609017,14610441,14617913	0.962963
testis_male_adult_37_years	chr16	76309864	76309882	76309864	+	High_confidence	8	8	21	0.938614	3.975418	chr16	76309640	76309982	LTR|ERVL-MaLR|THE1A	+	chr16	76309852	76495198	CNTNAP4|ENST00000471618.5	+	76309852,76316412,76355317,76427451,76448011,76448766,76449714,76452507,76461955,76467351,76475938,76479418,76489685,76494909	76309906,76316523,76355511,76427599,76448215,76448951,76449858,76452769,76462105,76467523,76476045,76479538,76489883,76495198	0.952381
testis_male_adult_37_years	chr1	188013615	188013662	188013619	+	High_confidence	15	15	91	4.067326	4.798734	chr1	188012480	188013856	LTR|ERV1|LTR12C	-	chr1	188013641	188144763	AL136372.2|ENST00000648838.1	+	188013641,188042891,188097138,188143896	188013999,188042987,188097218,188144763	0.956044
testis_male_adult_37_years	chr1	15588519	15588520	15588519	-	High_confidence	212	213	295	13.185288	5.950513	chr1	15587991	15588747	LTR|ERV1|LTR12D	-	chr1	15577415	15588564	STRG.1627.2	-	15577415,15578858,15580093,15583192,15587979	15577864,15579054,15580142,15583395,15588564	0.938983
testis_male_adult_37_years	chr2	168786419	168786429	168786428	-	High_confidence	10	10	16	0.715134	3.373557	chr2	168786179	168786835	LTR|ERV1|MER50	+	chr2	168774398	168786428	CERS6-AS1|ENST00000599361.5	-	168774398,168774820,168783954,168786356	168774638,168774951,168784047,168786428	0.750000
testis_male_adult_37_years	chr5	176187550	176187590	176187566	-	RAMPAGE_only	4	4	13	0.581047	3.418296	chr5	176187271	176187775	LTR|ERVL-MaLR|MLT1G3	-	chr5	176173352	176191876	STRG.105884.9	-	176173352,176174973,176176281,176176758,176180815,176183230,176185100	176173563,176175901,176176450,176180348,176182763,176183301,176191876	0.923077
testis_male_adult_37_years	chr12	131529871	131529894	131529873	-	High_confidence	69	90	281	12.559546	3.551074	chr12	131529857	131530075	LTR|ERVL-MaLR|MLT1K	+	chr12	131527672	131530173	STRG.211413.2	-	131527672	131530173	0.950178
testis_male_adult_37_years	chr11	127127765	127127803	127127772	+	RAMPAGE_only	6	6	23	1.028006	4.001823	chr11	127127556	127127895	LTR|ERV1|MER61A	-	chr11	127137220	127138006	STRG.195891.1	+	127137220	127138006	0.608696
testis_male_adult_37_years	chr2	53487566	53487578	53487566	-	High_confidence	3	3	9	0.402263	3.000000	chr2	53487492	53487825	LTR|ERVL-MaLR|MLT1B	+	chr2	53420165	53487967	STRG.29201.1	-	53420165,53487429	53423929,53487967	0.666667
testis_male_adult_37_years	chr4	80303730	80303734	80303733	+	High_confidence	34	34	57	2.547666	4.490565	chr4	80302655	80304045	LTR|ERV1|LTR12C	+	chr4	80303716	80307127	STRG.76830.1	+	80303716	80307127	0.894737
testis_male_adult_37_years	chr1	150900050	150900088	150900087	+	High_confidence	25	26	68	3.039321	5.578411	chr1	150899824	150900513	LTR|ERV1|LTR12_	+	chr1	150900097	150901973	STRG.13012.1	+	150900097	150901973	0.955882
testis_male_adult_37_years	chr2	195572966	195572986	195572966	-	High_confidence	4	4	13	0.581047	3.546594	chr2	195572709	195573020	SINE|Alu|AluJo	+	chr2	195569627	195572970	LINC01827|ENST00000432711.1	-	195569627,195572650	195569862,195572970	0.846154
testis_male_adult_37_years	chr1	6200705	6200747	6200734	-	High_confidence	8	8	27	1.206789	3.615818	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	1.000000
testis_male_adult_37_years	chr3	156042132	156042133	156042132	+	High_confidence	217	217	235	10.503535	5.871420	chr3	156041137	156042550	LTR|ERV1|LTR12C	+	chr3	156042139	156047872	STRG.63927.1	+	156042139,156043869	156042604,156047872	0.948936
testis_male_adult_37_years	chr4	158201593	158201607	158201593	+	High_confidence	79	82	242	10.816406	6.737143	chr4	158201406	158201936	LTR|ERVL-MaLR|MLT1F	+	chr4	158201603	158217349	TMEM144|ENST00000505189.5	+	158201603,158203642,158211452,158212060,158212607,158215190,158217320	158201698,158203708,158211574,158212220,158212776,158215313,158217349	0.549587
testis_male_adult_37_years	chr19	11539664	11539684	11539664	+	High_confidence	1	1	8	0.357567	2.807355	chr19	11539660	11539789	SINE|MIR|MIRb	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	0.875000
testis_male_adult_37_years	chr4	136056813	136056820	136056813	+	RAMPAGE_only	3	3	8	0.357567	2.807355	chr4	136056696	136057117	LTR|ERVL|MER70B	-	chr4	136068220	136068477	STRG.82421.1	+	136068220	136068477	0.500000
testis_male_adult_37_years	chr16	11587465	11587475	11587468	-	High_confidence	4	4	10	0.446959	2.947703	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.800000
testis_male_adult_37_years	chr6	166957429	166957431	166957430	-	High_confidence	7	9	13	0.581047	3.546594	chr6	166957416	166957859	LINE|L2|L2a	+	chr6	166929539	166957184	RNASET2|ENST00000476238.6	-	166929539,166931043,166934090,166938894,166943018,166946681,166948569,166952487,166956096,166957125	166929791,166931118,166934136,166939008,166943089,166946739,166948625,166952548,166956191,166957184	1.000000
testis_male_adult_37_years	chr1	191151407	191151450	191151434	-	High_confidence	5	5	23	1.028006	3.975418	chr1	191151245	191152394	LTR|ERV1|LTR12E	+	chr1	190878144	191151410	AL138927.1|ENST00000648197.1	-	190878144,190976419,190977168,191044978,191094432,191151209	190879847,190976525,190977326,191045087,191094593,191151410	0.521739
testis_male_adult_37_years	chr4	173459966	173460000	173459999	+	High_confidence	2	2	8	0.357567	3.000000	chr4	173459996	173463139	LINE|L1|L1MB4	+	chr4	173460041	173463809	STRG.86191.1	+	173460041	173463809	1.000000
testis_male_adult_37_years	chr13	51468301	51468309	51468301	+	RAMPAGE_only	6	6	13	0.581047	3.251629	chr13	51468220	51468353	SINE|MIR|MIRb	-	chr13	51454163	51468780	INTS6-AS1|ENST00000594358.5	+	51454163,51468267	51454329,51468780	0.615385
testis_male_adult_37_years	chr20	35713417	35713451	35713450	-	High_confidence	5	5	17	0.759830	3.750000	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.941176
testis_male_adult_37_years	chr5	115153780	115153816	115153780	-	High_confidence	17	17	36	1.609052	4.712319	chr5	115153510	115153791	SINE|Alu|AluSx	-	chr5	115141323	115153811	TRIM36|ENST00000513485.5	-	115141323,115144597,115147068,115153704	115141374,115144744,115147394,115153811	0.500000
testis_male_adult_37_years	chr8	31177184	31177198	31177192	-	High_confidence	5	5	22	0.983310	4.201841	chr8	31176942	31177294	LTR|ERV1|MER51A	+	chr8	31152254	31177195	STRG.145482.1	-	31152254,31167077,31171140,31176691	31152327,31167192,31171318,31177195	0.863636
testis_male_adult_37_years	chr11	57794056	57794070	57794069	+	RAMPAGE_only	9	9	17	0.759830	3.807764	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.941176
testis_male_adult_37_years	chr4	150974367	150974406	150974387	-	RAMPAGE_only	3	3	16	0.715134	3.640224	chr4	150974227	150974393	LINE|L1|L1MEf	+	chr4	150264530	151015267	LRBA|ENST00000510413.5	-	150264530,150277852,150282449,150285932,150302627,150310228,150315560,150321190,150325808,150349991,150415437,150435588,150436723,150467672,150471623,150487731,150490917,150588047,150590712,150599006,150683550,150735257,150761782,150798080,150806270,150808319,150817123,150828179,150831816,150844099,150844657,150848817,150849421,150850723,150851884,150867670,150868181,150870524,150871344,150872662,150893051,150896393,150897738,150900048,150905837,150906296,150908333,150908659,150914194,150915607,150916400,150916616,150921197,150928515,150928833,151014426,151015201	150265812,150278004,150282646,150286034,150302792,150310384,150315623,150321368,150325898,150350159,150415590,150435708,150436864,150467785,150471739,150487834,150491035,150588184,150590859,150599131,150683717,150735366,150761847,150798142,150806404,150808398,150817257,150828621,150831976,150844207,150844779,150848998,150849575,150850902,150852943,150867863,150868305,150870606,150871453,150872755,150893149,150896456,150897818,150900217,150905990,150906405,150908467,150908857,150914341,150915727,150916527,150916738,150921293,150928616,150929065,151014861,151015267	0.875000
testis_male_adult_37_years	chr9	36264878	36264883	36264878	+	High_confidence	24	24	45	2.011315	4.561482	chr9	36264623	36265392	LTR|ERV1|LTR17	+	chr9	36264726	36285102	STRG.160619.6	+	36264726,36265420,36284707	36265308,36265574,36285102	0.711111
testis_male_adult_37_years	chr3	29541619	29541642	29541641	-	RAMPAGE_only	8	9	20	0.893918	4.037401	chr3	29541163	29542177	LINE|L2|L2a	+	chr3	29538401	29538813	STRG.51622.1	-	29538401	29538813	0.800000
testis_male_adult_37_years	chr7	144976878	144976905	144976895	+	High_confidence	9	9	40	1.787836	4.435114	chr7	144976424	144977674	LTR|ERVL|ERV3-16A3_I-int	+	chr7	144976798	145019072	STRG.139760.1	+	144976798,145018954	144977380,145019072	0.800000
testis_male_adult_37_years	chr5	151133270	151133303	151133302	-	High_confidence	6	6	18	0.804526	3.852169	chr5	151133251	151133323	LINE|L2|L2c	+	chr5	151126444	151133323	ANXA6|ENST00000517707.5	-	151126444,151128180,151129406,151131230,151132475,151133093	151126480,151128239,151129529,151131289,151132571,151133323	0.500000
testis_male_adult_37_years	chr9	69307085	69307107	69307085	-	High_confidence	2	2	7	0.312871	2.584963	chr9	69306938	69307567	LTR|ERV1|MER41B	-	chr9	69296680	69307056	BANCR|NR_047671.2	-	69296680,69304935,69306147,69306853	69296867,69305077,69306290,69307056	0.714286
testis_male_adult_37_years	chr14	76826245	76826275	76826245	-	High_confidence	19	24	73	3.262800	5.210658	chr14	76826137	76826208	SINE|5S-Deu-L2|AmnSINE1	-	chr14	76809351	76826246	ANGEL1|ENST00000557497.1	-	76809351,76814306,76826076	76809643,76814421,76826246	0.561644
testis_male_adult_37_years	chr21	38121347	38121362	38121361	-	High_confidence	10	11	34	1.519660	4.146286	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38054010	38121360	DSCR4|ENST00000328264.7	-	38054010,38120306,38121127	38054773,38120408,38121360	0.852941
testis_male_adult_37_years	chr10	91414592	91414615	91414592	+	RAMPAGE_only	2	2	6	0.268175	2.584963	chr10	91414422	91414860	LINE|L2|L2c	-	chr10	91413185	91489981	STRG.177992.5	+	91413185,91460426,91461253,91462094,91478200,91481093,91482966,91485179	91425410,91460565,91461356,91462184,91478265,91481139,91484655,91489981	1.000000
testis_male_adult_37_years	chr1	242773815	242773816	242773815	-	High_confidence	303	305	324	14.481469	5.661040	chr1	242773406	242774757	LTR|ERV1|LTR12C	-	chr1	242739664	242773821	STRG.22037.2	-	242739664,242761414,242773020	242740539,242761539,242773821	0.935185
testis_male_adult_37_years	chr7	74180623	74180624	74180623	+	RAMPAGE_only	19	19	21	0.938614	3.826875	chr7	74180599	74180847	LINE|CR1|L3	+	chr7	74183821	74194805	EIF4H|ENST00000495187.1	+	74183821,74187610,74189672,74189821,74190246,74194740	74183921,74187798,74189737,74189918,74190306,74194805	0.809524
testis_male_adult_37_years	chr14	81192654	81192717	81192681	-	RAMPAGE_only	16	17	96	4.290806	5.622155	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.979167
testis_male_adult_37_years	chr10	104566938	104566949	104566938	+	High_confidence	2	2	7	0.312871	2.584963	chr10	104566745	104567101	LTR|ERVL-MaLR|MLT1A0	+	chr10	104566971	104624795	AL161646.2|ENST00000649412.1	+	104566971,104585356,104594715,104596007,104597368,104616013,104616656,104624597	104567023,104585600,104594835,104596112,104597494,104616153,104616826,104624795	0.714286
testis_male_adult_37_years	chr5	41281371	41281372	41281371	+	High_confidence	5	5	8	0.357567	2.521641	chr5	41281179	41281485	LTR|ERVL-MaLR|THE1C	+	chr5	41281590	41282343	STRG.92715.1	+	41281590	41282343	0.500000
testis_male_adult_37_years	chr1	19344364	19344389	19344388	-	RAMPAGE_only	6	6	10	0.446959	2.521928	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
testis_male_adult_37_years	chr1	39514097	39514109	39514108	+	RAMPAGE_only	6	6	12	0.536351	3.095795	chr1	39513319	39514368	LINE|L2|L2	-	chr1	39491645	39529869	BMP8A|NM_181809.3	+	39491645,39511173,39511755,39521375,39522402,39523006,39525648	39492325,39511363,39511904,39521570,39522482,39523117,39529869	0.750000
testis_male_adult_37_years	chr12	71772161	71772174	71772169	+	RAMPAGE_only	100	102	281	12.559546	6.148435	chr12	71772015	71772475	LTR|ERVL-MaLR|MLT1H	-	chr12	71770535	71785919	RAB21|ENST00000358546.3	+	71770535,71773958,71782030,71782569,71785530	71770699,71774022,71782085,71782658,71785919	0.918149
testis_male_adult_37_years	chrX	9535003	9535004	9535003	+	RAMPAGE_only	7	7	8	0.357567	2.807355	chrX	9534975	9535052	SINE|MIR|MIRb	+	chrX	9531005	9719723	TBL1X|ENST00000646640.1	+	9531005,9636281,9640272,9653544,9654214,9684042,9688016,9691578,9692112,9693148,9693321,9697368,9704992,9709247,9709632,9711610,9714901,9716219	9531088,9637918,9640360,9653689,9654322,9684188,9688275,9691711,9692254,9693212,9693419,9697429,9705114,9709322,9709760,9711776,9715003,9719723	0.625000
testis_male_adult_37_years	chr14	95516107	95516122	95516119	+	High_confidence	4	6	13	0.581047	3.546594	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.923077
testis_male_adult_37_years	chr12	95862265	95862295	95862267	+	RAMPAGE_only	12	15	22	0.983310	3.748995	chr12	95861806	95862431	LINE|L1|L1MB3	-	chr12	95865078	95866451	SNRPF|ENST00000549580.1	+	95865078,95866004	95865388,95866451	0.954545
testis_male_adult_37_years	chr11	14337385	14337413	14337399	-	High_confidence	8	8	44	1.966619	4.726144	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.886364
testis_male_adult_37_years	chr4	118265995	118266052	118266051	-	High_confidence	8	8	35	1.564356	4.557854	chr4	118265367	118266730	LTR|ERV1|LTR12C	+	chr4	118193404	118266282	STRG.80573.2	-	118193404,118251568,118258975,118265783	118204282,118251687,118259075,118266282	0.828571
testis_male_adult_37_years	chr7	127112282	127112296	127112285	-	High_confidence	39	40	146	6.525600	6.311253	chr7	127112043	127112502	LINE|L2|L2a	+	chr7	127090922	127112286	GRM8|ENST00000473254.1	-	127090922,127105295,127106495,127111040,127112168	127091013,127105370,127106712,127111186,127112286	0.547945
testis_male_adult_37_years	chr9	93005842	93005865	93005842	+	RAMPAGE_only	2	2	8	0.357567	2.750000	chr9	93005803	93005920	SINE|MIR|MIRb	-	chr9	92975249	93036236	FGD3|ENST00000467786.1	+	92975249,92976207,93002924,93004000,93006023,93010245,93011213,93013851,93015736,93018135,93019830,93020316,93022326,93029873,93032768,93035337	92975405,92976709,93003014,93004137,93006180,93010384,93011272,93013998,93015829,93018215,93019861,93020424,93022389,93029996,93034681,93036236	0.875000
testis_male_adult_37_years	chr11	112097936	112097947	112097936	+	RAMPAGE_only	2	2	8	0.357567	2.750000	chr11	112097709	112097971	LINE|L2|L2c	-	chr11	112088866	112119442	SDHD|ENST00000534010.1	+	112088866,112107544,112119291	112089011,112107708,112119442	0.750000
testis_male_adult_37_years	chr4	86117789	86117827	86117789	-	High_confidence	8	8	33	1.474964	4.567100	chr4	86117503	86118131	LTR|ERVL|LTR67B	+	chr4	86095601	86117827	MAPK10|ENST00000641543.1	-	86095601,86098420,86101051,86101893,86103185,86107222,86117557	86095716,86098595,86101217,86102032,86103244,86107352,86117827	0.636364
testis_male_adult_37_years	chr2	88291316	88291368	88291367	+	High_confidence	17	19	44	1.966619	4.760457	chr2	88291022	88291557	LTR|ERV1|LTR12F	+	chr2	88290899	88292893	STRG.32759.1	+	88290899	88292893	0.931818
testis_male_adult_37_years	chr9	127451087	127451133	127451087	-	High_confidence	2	2	9	0.402263	2.947703	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	1.000000
testis_male_adult_37_years	chr1	230745574	230745605	230745574	-	High_confidence	8	9	28	1.251485	3.767183	chr1	230745436	230745805	LTR|ERVL-MaLR|MLT1A0	-	chr1	230702612	230745591	STRG.20371.2	-	230702612,230704192,230705932,230709994,230745514	230703329,230704337,230706200,230710853,230745591	0.571429
testis_male_adult_37_years	chr2	130692962	130692992	130692991	+	High_confidence	5	5	18	0.804526	4.058814	chr2	130693010	130693142	SINE|Alu|AluY	+	chr2	130693281	130696388	FAR2P3|ENST00000434289.1	+	130693281,130696341	130693796,130696388	0.833333
testis_male_adult_37_years	chr17	18419966	18419970	18419969	+	High_confidence	11	15	22	0.983310	4.061482	chr17	18419957	18420357	LINE|L1|L1PB4	-	chr17	18419967	18425097	KRT17P5|ENST00000444070.3	+	18419967,18420332,18422180,18423312,18423656,18424488,18424793	18420183,18421016,18423064,18423549,18423734,18424637,18425097	0.954545
testis_male_adult_37_years	chr4	18417890	18417914	18417899	-	High_confidence	3	3	11	0.491655	2.921928	chr4	18417470	18418903	LTR|ERV1|LTR12C	-	chr4	18417541	18417868	STRG.71582.1	-	18417541	18417868	0.727273
testis_male_adult_37_years	chr14	70255101	70255127	70255126	+	High_confidence	4	4	12	0.536351	3.459432	chr14	70255023	70256182	LTR|ERV1|LTR12C	+	chr14	70255650	70291859	STRG.228191.1	+	70255650,70275295,70291476	70256189,70275360,70291859	0.916667
testis_male_adult_37_years	chr3	142429754	142429760	142429759	-	High_confidence	4	5	9	0.402263	2.947703	chr3	142429638	142429815	LTR|ERVL|LTR67B	+	chr3	142422634	142429774	XRN1|ENST00000477237.1	-	142422634,142422834,142423559,142425221,142425428,142426743,142429694	142422750,142422922,142423642,142425332,142425538,142426841,142429774	0.777778
testis_male_adult_37_years	chr4	137421836	137421837	137421836	+	High_confidence	21	21	21	0.938614	3.939471	chr4	137420836	137422195	LTR|ERV1|LTR12C	+	chr4	137421820	137422564	STRG.82447.1	+	137421820	137422564	0.904762
testis_male_adult_37_years	chr2	155231277	155231291	155231277	-	High_confidence	13	13	45	2.011315	4.907962	chr2	155231098	155231402	SINE|Alu|AluY	+	chr2	155223649	155231292	STRG.38433.2	-	155223649,155230931	155224485,155231292	0.666667
testis_male_adult_37_years	chr3	28199845	28199846	28199845	-	High_confidence	101	103	106	4.737765	5.384911	chr3	28199437	28200978	LTR|ERV1|LTR12C	-	chr3	28169071	28199856	STRG.51432.1	-	28169071,28199426	28169537,28199856	0.933962
testis_male_adult_37_years	chr4	115179033	115179034	115179033	-	High_confidence	238	239	319	14.257989	5.289088	chr4	115178618	115179981	LTR|ERV1|LTR12C	-	chr4	115177854	115179757	STRG.80113.1	-	115177854	115179757	0.971787
testis_male_adult_37_years	chr19	19930332	19930392	19930391	+	RAMPAGE_only	4	4	30	1.340877	4.211261	chr19	19929962	19930908	LTR|ERVK|LTR13	-	chr19	19914584	19935575	STRG.267925.6	+	19914584,19915279,19916559,19933181	19914822,19915406,19916655,19935575	0.866667
testis_male_adult_37_years	chrX	97237650	97237689	97237682	+	RAMPAGE_only	5	5	20	0.893918	3.884184	chrX	97237564	97237880	SINE|Alu|AluYk4	-	chrX	96685016	97469765	DIAPH2|ENST00000373054.5	+	96685016,96735757,96738585,96758153,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348117,97383908,97429649,97469693	96685190,96735790,96738762,96758258,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247841,97348280,97384044,97429745,97469765	0.850000
testis_male_adult_37_years	chr4	187814822	187814832	187814831	+	High_confidence	8	9	20	0.893918	4.021928	chr4	187814585	187815260	LTR|ERV1|MER50	+	chr4	187814820	187815891	STRG.87718.1	+	187814820	187815891	0.950000
testis_male_adult_37_years	chr22	43861521	43861539	43861521	-	High_confidence	2	3	8	0.357567	2.750000	chr22	43861441	43861616	SINE|MIR|MIRb	+	chr22	43824509	43862406	SULT4A1|ENST00000432404.5	-	43824509,43829059,43833639,43838866,43839944,43862213	43826113,43829198,43833734,43838993,43840025,43862406	0.875000
testis_male_adult_37_years	chr12	28412855	28412892	28412855	+	RAMPAGE_only	16	16	38	1.698444	4.864727	chr12	28412490	28412917	LTR|ERV1|LTR12F	-	chr12	28450397	28484229	CCDC91|ENST00000535212.1	+	28450397,28452477,28484051	28450418,28452654,28484229	0.605263
testis_male_adult_37_years	chr11	10586684	10586707	10586684	-	RAMPAGE_only	8	10	27	1.206789	4.133661	chr11	10586416	10586717	SINE|Alu|AluSz	-	chr11	10573090	10652185	MRVI1|ENST00000424001.5	-	10573090,10580454,10581866,10591547,10593491,10594145,10600917,10603119,10604404,10606741,10609727,10623777,10625965,10627715,10627972,10628750,10629537,10631990,10652024	10576575,10580589,10581986,10591612,10593599,10594195,10601059,10603251,10604545,10606772,10609851,10623856,10626583,10627763,10628025,10628828,10629711,10632061,10652185	0.888889
testis_male_adult_37_years	chr13	89883361	89883362	89883361	-	High_confidence	122	125	154	6.883167	5.010340	chr13	89882945	89884388	LTR|ERV1|LTR12C	-	chr13	89882825	89883436	STRG.219149.1	-	89882825	89883436	0.967532
testis_male_adult_37_years	chr3	139436700	139436725	139436724	+	RAMPAGE_only	26	31	90	4.022630	5.614731	chr3	139436526	139436960	LTR|ERVL-MaLR|MLT1C	+	chr3	139389839	139459441	STRG.62533.2	+	139389839,139419556,139423015,139444293	139390247,139419680,139423114,139459441	0.533333
testis_male_adult_37_years	chr4	188615647	188615683	188615647	-	High_confidence	78	81	113	5.050636	4.920694	chr4	188615247	188615908	LTR|ERV1|LTR12_	-	chr4	188614959	188615732	STRG.87885.1	-	188614959	188615732	0.973451
testis_male_adult_37_years	chr7	33351839	33351947	33351852	+	High_confidence	13	13	70	3.128712	5.523279	chr7	33351630	33351888	LTR|ERV1|MER61C	-	chr7	33351926	33388007	BBS9|ENST00000627264.1	+	33351926,33357854,33367766,33383665,33387991	33352049,33357995,33367862,33383838,33388007	0.842857
testis_male_adult_37_years	chr5	181032985	181033020	181033019	+	High_confidence	19	21	39	1.743140	4.879506	chr5	181032305	181033422	LTR|ERV1|LTR12D	+	chr5	181033022	181034656	STRG.106740.1	+	181033022	181034656	0.948718
testis_male_adult_37_years	chr10	133559103	133559137	133559136	-	RAMPAGE_only	7	7	19	0.849222	3.905765	chr10	133559108	133559272	DNA|hAT-Tip100|MER45A	+	chr10	133553900	133565583	SYCE1|ENST00000479535.2	-	133553900,133555350,133555596,133555779,133555980,133556758,133557066,133557863,133558166,133558876,133565456	133554328,133555438,133555707,133555903,133556047,133556822,133557156,133557918,133558214,133560153,133565583	0.894737
testis_male_adult_37_years	chr11	101080101	101080138	101080131	-	RAMPAGE_only	19	21	56	2.502970	4.488749	chr11	101079844	101081147	LINE|L1|L1PA16	+	chr11	101039060	101064025	PGR|ENST00000533207.5	-	101039060,101041944,101049928,101051423,101062446	101039271,101042102,101050059,101051568,101064025	0.732143
testis_male_adult_37_years	chr17	21085238	21085239	21085238	-	High_confidence	317	319	420	18.772274	5.322441	chr17	21084822	21086036	LTR|ERV1|LTR12D	-	chr17	21084315	21085341	STRG.252425.1	-	21084315	21085341	0.983333
testis_male_adult_37_years	chr7	156402443	156402451	156402443	-	High_confidence	8	10	18	0.804526	3.969816	chr7	156401999	156402441	LTR|Gypsy|LTR81A	-	chr7	156401540	156402268	STRG.141208.1	-	156401540	156402268	0.500000
testis_male_adult_37_years	chr3	80770578	80770621	80770607	+	High_confidence	14	21	62	2.771145	5.077349	chr3	80770587	80770950	LTR|ERV1|LTR1A2	-	chr3	80770535	80778609	STRG.56417.1	+	80770535	80778609	0.854839
testis_male_adult_37_years	chr9	74771402	74771422	74771405	-	RAMPAGE_only	5	5	26	1.162093	3.323935	chr9	74771024	74771564	LINE|L2|L2a	+	chr9	74722494	74887347	TRPM6|ENST00000361255.7	-	74722494,74728238,74732684,74738406,74739366,74739722,74742560,74744094,74747888,74750663,74752276,74755352,74761695,74761998,74771702,74775882,74782361,74782678,74785873,74788613,74792623,74796740,74800253,74801897,74803793,74808033,74810814,74812298,74816668,74816891,74820303,74821668,74827777,74833997,74840023,74842165,74855526,74858668,74887230	74724746,74728345,74732736,74738612,74739449,74740009,74742626,74744145,74747914,74750722,74752368,74755473,74761808,74763134,74771835,74776076,74782476,74782853,74786125,74788742,74792770,74796893,74800482,74802175,74803886,74808174,74810868,74812433,74816769,74816964,74820427,74821837,74827949,74834122,74840237,74842343,74855565,74858748,74887347	0.846154
testis_male_adult_37_years	chr16	20674972	20675020	20674975	+	High_confidence	3	3	20	0.893918	3.684184	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.550000
testis_male_adult_37_years	chr5	170267243	170267285	170267284	-	High_confidence	6	6	22	0.983310	3.572624	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.954545
testis_male_adult_37_years	chr20	34369392	34369440	34369392	+	RAMPAGE_only	3	3	16	0.715134	3.625000	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	1.000000
testis_male_adult_37_years	chr6	11934029	11934030	11934029	+	High_confidence	191	191	214	9.564921	5.166792	chr6	11932842	11934427	LTR|ERV1|LTR12C	+	chr6	11934036	11935232	STRG.108419.1	+	11934036	11935232	0.943925
testis_male_adult_37_years	chr19	14018330	14018350	14018349	+	RAMPAGE_only	11	12	23	1.028006	4.070656	chr19	14018123	14018421	SINE|Alu|AluSq2	+	chr19	14028147	14031558	RLN3|NM_001311197.1	+	14028147,14030244,14030709	14028394,14030356,14031558	0.826087
testis_male_adult_37_years	chr4	67151863	67151914	67151863	-	High_confidence	13	14	64	2.860537	5.093500	chr4	67151698	67152983	LTR|ERV1|LTR12C	+	chr4	67140950	67151977	STRG.75695.1	-	67140950,67151475	67141401,67151977	0.875000
testis_male_adult_37_years	chr7	158833931	158833954	158833953	+	RAMPAGE_only	4	4	12	0.536351	3.418296	chr7	158833947	158834144	LTR|ERVL-MaLR|MLT1A1	+	chr7	158856577	158946192	WDR60|NM_018051.4	+	158856577,158869854,158871141,158876608,158879683,158884563,158887020,158891264,158901738,158902375,158905988,158911549,158912984,158914232,158918739,158922376,158923570,158926186,158926401,158926991,158930454,158934128,158934417,158941924,158945580	158856750,158869908,158871562,158876691,158879989,158884619,158887075,158891333,158901816,158902595,158906091,158911679,158913096,158914321,158918869,158922549,158923733,158926300,158926463,158927043,158930515,158934228,158934549,158942148,158946192	0.916667
testis_male_adult_37_years	chr6	29457169	29457188	29457178	+	High_confidence	14	14	45	2.011315	4.669196	chr6	29456718	29457278	LTR|ERVL-MaLR|MLT1F1	-	chr6	29457202	29461086	OR2H1|ENST00000484371.1	+	29457202,29458453,29460020,29460875	29457207,29458569,29460184,29461086	0.533333
testis_male_adult_37_years	chr15	92710675	92710676	92710675	-	High_confidence	124	129	135	6.033945	5.426455	chr15	92710299	92711583	LTR|ERV1|LTR12C	-	chr15	92709481	92710832	STRG.239830.4	-	92709481	92710832	0.829630
testis_male_adult_37_years	chr11	90167903	90167961	90167960	+	RAMPAGE_only	107	107	256	11.442148	4.862586	chr11	90167016	90168370	LTR|ERV1|LTR12C	+	chr11	90134728	90192611	STRG.191648.5	+	90134728,90135558,90147329,90149005,90150481,90152297,90158144,90162948,90163309,90163534,90168928,90173823,90175971,90177852,90181619,90182915,90191557	90134840,90135670,90147516,90149107,90150607,90152484,90159337,90163034,90163429,90168491,90168992,90173915,90176062,90178117,90181701,90183008,90192611	0.972656
testis_male_adult_37_years	chr2	228023794	228023813	228023794	-	RAMPAGE_only	3	3	16	0.715134	3.773557	chr2	228023766	228024154	LTR|ERVL-MaLR|MLT1K	+	chr2	227995618	228020122	STRG.45845.1	-	227995618,228016405	227995694,228020122	0.750000
testis_male_adult_37_years	chr15	58934863	58934891	58934881	-	RAMPAGE_only	3	3	10	0.446959	2.947703	chr15	58934680	58934900	SINE|MIR|MIRc	-	chr15	58879044	58933676	SLTM|NM_024755.3	-	58879044,58883625,58886974,58887225,58888384,58889429,58890280,58892896,58893278,58893820,58894089,58894432,58897114,58898802,58899468,58901259,58912562,58913498,58916934,58932355,58933403	58880107,58883786,58887119,58887540,58888555,58889554,58890461,58893060,58893364,58893987,58894193,58894582,58897233,58898852,58899937,58901287,58912610,58913696,58916999,58932443,58933676	0.600000
testis_male_adult_37_years	chr8	143281653	143281687	143281686	-	High_confidence	47	54	203	9.073266	5.573732	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.571429
testis_male_adult_37_years	chr17	31762436	31762437	31762436	+	High_confidence	40	40	52	2.324186	4.768367	chr17	31762038	31762862	LTR|ERV1|LTR12	+	chr17	31762437	31762907	STRG.253132.1	+	31762437	31762907	0.923077
testis_male_adult_37_years	chr19	19777930	19777956	19777930	+	RAMPAGE_only	5	5	13	0.581047	3.700440	chr19	19777951	19778325	LTR|ERVL-MaLR|THE1B	+	chr19	19775898	19807455	STRG.267909.3	+	19775898,19776770,19806280	19776273,19789821,19807455	0.923077
testis_male_adult_37_years	chrX	24662817	24662839	24662817	+	High_confidence	14	20	69	3.084017	4.962032	chrX	24662451	24662978	LTR|ERVL|LTR75	+	chrX	24662770	24668485	STRG.289118.1	+	24662770,24668137	24662885,24668485	0.985507
testis_male_adult_37_years	chr4	62363406	62363439	62363406	-	High_confidence	20	22	68	3.039321	5.214532	chr4	62363096	62363723	LINE|L2|L2a	+	chr4	62360365	62363395	STRG.75286.1	-	62360365,62361196,62363358	62360529,62362521,62363395	0.779412
testis_male_adult_37_years	chr6	3195772	3195779	3195772	-	High_confidence	7	7	14	0.625742	3.546594	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.857143
testis_male_adult_37_years	chr6	89686928	89686990	89686971	-	RAMPAGE_only	3	3	10	0.446959	2.521928	chr6	89686911	89686957	DNA|hAT-Ac|OldhAT1	-	chr6	89642498	89819723	MDN1|ENST00000369393.7	-	89642498,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89706058,89707360,89708495,89710680,89712035,89712574,89713147,89714542,89715652,89716649,89718365,89718766,89719135,89722954,89723511,89725198,89727832,89728930,89730725,89732556,89738325,89740233,89743149,89743575,89745272,89745491,89747328,89749222,89749542,89750353,89751430,89753511,89754082,89756276,89758254,89758815,89761644,89762318,89771560,89772572,89774620,89776599,89780211,89781398,89785011,89787853,89789779,89790158,89793761,89794099,89794576,89803327,89819505	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89706192,89707476,89708628,89710794,89712256,89712786,89713296,89714751,89715769,89716809,89718627,89719030,89719225,89723143,89723619,89725396,89727955,89729139,89730923,89732775,89738455,89740378,89743280,89743714,89745411,89745626,89747470,89749369,89749751,89750532,89751582,89753622,89754230,89756390,89758351,89758960,89761748,89762530,89771621,89772721,89774733,89776695,89780293,89781592,89785126,89787957,89789911,89790401,89793954,89794207,89794801,89803554,89819723	0.900000
testis_male_adult_37_years	chr2	190760500	190760501	190760500	-	High_confidence	571	573	622	27.800845	6.625321	chr2	190760093	190761528	LTR|ERV1|LTR12C	-	chr2	190760022	190761275	STRG.42053.2	-	190760022	190761275	0.850482
testis_male_adult_37_years	chr17	76256920	76256921	76256920	-	High_confidence	68	69	72	3.218104	4.518536	chr17	76256640	76258213	LTR|ERV1|LTR12C	-	chr17	76255220	76256908	STRG.257863.1	-	76255220	76256908	0.930556
testis_male_adult_37_years	chr7	23046759	23046812	23046804	-	RAMPAGE_only	6	9	36	1.609052	3.852928	chr7	23045311	23047416	Retroposon|SVA|SVA_D	-	chr7	22941258	23014151	FAM126A|NM_032581.3	-	22941258,22960255,22961234,22964414,22976209,22976692,22977340,22978268,22983943,22991060,23013924	22946163,22960415,22961322,22964531,22976305,22976808,22977421,22978448,22984045,22991139,23014151	0.916667
testis_male_adult_37_years	chr8	120124419	120124440	120124419	+	High_confidence	4	4	10	0.446959	2.947703	chr8	120124361	120124487	DNA|hAT-Charlie|MER5A	+	chr8	120125107	120373575	COL14A1|NM_021110.3	+	120125107,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120278110,120278434,120279934,120280710,120280920,120283635,120285860,120289607,120297510,120300731,120310008,120313931,120315532,120315943,120332140,120332663,120341324,120342379,120345374,120367170,120369329,120371151	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120278234,120278578,120280099,120280749,120281059,120283778,120285970,120289766,120297588,120300818,120310062,120314027,120315586,120315997,120332194,120332735,120341360,120342446,120345563,120367248,120369485,120373575	0.800000
testis_male_adult_37_years	chr15	26831499	26831542	26831499	+	High_confidence	4	4	15	0.670438	3.664498	chr15	26830154	26831744	LTR|ERV1|LTR12C	-	chr15	26831560	26832758	STRG.232396.1	+	26831560	26832758	0.533333
testis_male_adult_37_years	chr1	45522842	45522876	45522858	-	High_confidence	5	5	18	0.804526	3.454822	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.944444
testis_male_adult_37_years	chr18	12843988	12843991	12843988	-	High_confidence	2	2	6	0.268175	2.584963	chr18	12843767	12845707	LINE|L1|L1MD2	-	chr18	12792301	12843981	PTPN2|ENST00000591497.5	-	12792301,12801969,12814202,12817155,12825809,12830942,12836790,12840713,12843904	12794485,12802151,12814355,12817365,12825944,12831041,12836891,12840962,12843981	0.833333
testis_male_adult_37_years	chr12	31117484	31117488	31117484	-	High_confidence	2	3	7	0.312871	2.584963	chr12	31117416	31117564	LTR|ERV1|HERVE-int	+	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.857143
testis_male_adult_37_years	chr20	31378355	31378394	31378374	-	RAMPAGE_only	7	7	37	1.653748	2.512939	chr20	31377559	31378569	LINE|L1|L1MDa	+	chr20	31377163	31390569	DEFB119|ENST00000492344.1	-	31377163,31378351,31388322,31390422	31377439,31378391,31388359,31390569	0.972973
testis_male_adult_37_years	chr12	112873843	112873889	112873869	+	High_confidence	7	7	26	1.162093	4.085055	chr12	112873817	112873966	LINE|L2|L2c	+	chr12	112873869	112883343	RPH3A|ENST00000552755.1	+	112873869,112874784,112875083,112875678,112876641,112879118,112881771,112883292	112874158,112874957,112875170,112875741,112876866,112879198,112881846,112883343	0.692308
testis_male_adult_37_years	chr11	111097287	111097367	111097351	-	High_confidence	32	34	193	8.626307	5.158510	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.963731
testis_male_adult_37_years	chr8	29002442	29002446	29002442	+	RAMPAGE_only	2	2	7	0.312871	2.521641	chr8	29001987	29002520	LTR|ERVL-MaLR|MLT1F	-	chr8	28890624	29051917	HMBOX1|ENST00000521516.5	+	28890624,28963810,28970042,28980070,29009071,29018759,29042638,29045360,29047357,29048953,29051017	28890678,28963890,28970519,28980156,29009182,29018913,29042718,29045443,29047453,29049048,29051917	0.571429
testis_male_adult_37_years	chr3	135965673	135965749	135965723	+	High_confidence	47	66	408	18.235924	6.497813	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.982843
testis_male_adult_37_years	chr2	218642030	218642043	218642042	-	RAMPAGE_only	3	3	6	0.268175	2.584963	chr2	218641825	218642010	SINE|MIR|MIRb	-	chr2	218638144	218659476	STRG.45191.3	-	218638144,218640663,218642027,218646170,218648634,218650358,218651700,218656149,218658700,218658979,218659368	218638808,218640769,218645064,218646348,218649459,218650526,218652300,218656463,218658876,218659130,218659476	1.000000
testis_male_adult_37_years	chr3	152107572	152107602	152107601	-	RAMPAGE_only	6	6	18	0.804526	2.939829	chr3	152107245	152107810	LTR|ERVL-MaLR|MLT1G1	-	chr3	152045904	152152552	STRG.63640.1	-	152045904,152071117,152073381,152151665	152046021,152071251,152073714,152152552	0.833333
testis_male_adult_37_years	chr10	1073903	1073908	1073903	+	High_confidence	6	7	12	0.536351	3.459432	chr10	1073574	1073947	LTR|ERVL-MaLR|MLT1B	-	chr10	1074382	1132170	STRG.169239.4	+	1074382,1077935,1080010,1080411,1084402,1086285,1093451,1096169,1103598,1105125,1124217,1124909,1129212	1074968,1078003,1080106,1080476,1084538,1086357,1093496,1096246,1103836,1105241,1124352,1125024,1132170	0.500000
testis_male_adult_37_years	chr18	64671662	64671663	64671662	+	High_confidence	43	43	46	2.056011	4.018606	chr18	64671270	64671969	LTR|ERV1|LTR12	+	chr18	64671648	64672072	STRG.263273.1	+	64671648	64672072	0.913043
testis_male_adult_37_years	chr2	148024010	148024027	148024026	+	RAMPAGE_only	6	6	24	1.072701	4.053509	chr2	148023928	148024095	SINE|MIR|MIR3	-	chr2	148021237	148028649	MBD5|ENST00000478190.3	+	148021237,148024965	148021684,148028649	0.500000
testis_male_adult_37_years	chr2	190340576	190340595	190340589	+	RAMPAGE_only	7	7	21	0.938614	3.984184	chr2	190340365	190340767	LTR|ERVL-MaLR|MSTB	+	chr2	190343469	190371665	INPP1|NM_001128928.1	+	190343469,190348887,190360038,190362626,190366694,190369102,190370843	190343961,190349031,190360306,190362687,190366895,190369277,190371665	0.666667
testis_male_adult_37_years	chr14	50313607	50313648	50313647	+	RAMPAGE_only	4	5	15	0.670438	3.640224	chr14	50313584	50314105	LINE|L1|L1MD2	-	chr14	50312640	50334907	ATP5S|ENST00000311459.11	+	50312640,50321482,50322510,50323944,50325608	50313060,50321594,50322719,50324116,50334907	0.733333
testis_male_adult_37_years	chr7	12555612	12555647	12555646	-	High_confidence	14	14	39	1.743140	4.722967	chr7	12555201	12556721	LTR|ERV1|LTR12C	-	chr7	12555214	12555761	STRG.126290.1	-	12555214	12555761	0.820513
testis_male_adult_37_years	chr5	39334290	39334302	39334295	-	RAMPAGE_only	4	4	12	0.536351	2.663533	chr5	39333622	39334995	Retroposon|SVA|SVA_D	+	chr5	39306701	39316014	STRG.92662.1	-	39306701,39308229,39311136,39315774	39306792,39308358,39311377,39316014	0.583333
testis_male_adult_37_years	chr6	4724884	4724885	4724884	-	High_confidence	298	298	319	14.257989	6.022434	chr6	4724469	4725869	LTR|ERV1|LTR12C	-	chr6	4714097	4724885	AL356747.1|ENST00000643972.1	-	4714097,4718526,4724410	4714908,4718594,4724885	0.915361
testis_male_adult_37_years	chr1	24066578	24066598	24066578	-	High_confidence	6	7	14	0.625742	3.546594	chr1	24066515	24066692	SINE|MIR|MIRb	+	chr1	24056034	24066579	MYOM3|ENST00000338909.9	-	24056034,24058923,24061059,24061272,24061945,24063125,24063491,24064071,24065890,24066106	24057627,24058979,24061082,24061309,24062109,24063234,24063530,24064159,24066001,24066579	0.928571
testis_male_adult_37_years	chr11	97957051	97957071	97957070	-	RAMPAGE_only	7	8	12	0.536351	3.277613	chr11	97957007	97957306	SINE|Alu|AluJb	-	chr11	97918422	97942762	AP003730.2|ENST00000527281.1	-	97918422,97937027,97942605	97918976,97937090,97942762	0.583333
testis_male_adult_37_years	chr20	44685303	44685335	44685334	-	RAMPAGE_only	4	4	15	0.670438	3.324863	chr20	44685068	44685316	SINE|MIR|MIRb	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.666667
testis_male_adult_37_years	chr17	69151166	69151230	69151214	-	High_confidence	8	10	53	2.368882	4.810735	chr17	69150866	69151321	LINE|L2|L2b	+	chr17	69148179	69150452	ABCA10|ENST00000524231.5	-	69148179,69149032,69149987	69148925,69149088,69150452	0.735849
testis_male_adult_37_years	chr3	152153378	152153379	152153378	+	High_confidence	89	89	90	4.022630	5.499398	chr3	152152232	152153792	LTR|ERV1|LTR12C	+	chr3	152152475	152155443	STRG.63639.1	+	152152475,152153463,152155063	152152847,152153829,152155443	0.833333
testis_male_adult_37_years	chr5	20611830	20611839	20611830	+	High_confidence	120	120	232	10.369447	5.073386	chr5	20611803	20612187	LTR|ERVL-MaLR|MLT1E1A	+	chr5	20611826	20612076	STRG.90821.1	+	20611826	20612076	0.762931
testis_male_adult_37_years	chr4	138089020	138089064	138089063	+	High_confidence	47	47	213	9.520225	6.133583	chr4	138087760	138089249	LTR|ERV1|LTR12C	-	chr4	138089013	138178177	SLC7A11-AS1|ENST00000510767.5	+	138089013,138090833,138104506,138168716,138171532,138174471,138175660	138089306,138090980,138105791,138168818,138171706,138174607,138178177	0.938967
testis_male_adult_37_years	chrX	17069107	17069119	17069118	+	RAMPAGE_only	15	16	25	1.117397	4.303509	chrX	17069063	17069285	SINE|MIR|MIRc	-	chrX	17074512	17147629	REPS2|ENST00000469714.1	+	17074512,17103717,17133823,17135260,17138855,17147412	17074608,17103779,17133907,17135406,17138961,17147629	0.920000
testis_male_adult_37_years	chr21	29011483	29011509	29011508	-	RAMPAGE_only	3	3	15	0.670438	3.521641	chr21	29010642	29012782	Retroposon|SVA|SVA_D	+	chr21	29007875	29019306	RWDD2B|ENST00000466746.1	-	29007875,29019210	29008621,29019306	0.533333
testis_male_adult_37_years	chr14	91425297	91425315	91425303	+	High_confidence	5	5	12	0.536351	3.277613	chr14	91424867	91425303	LTR|ERV1|MER83	-	chr14	91425113	91434373	STRG.230524.1	+	91425113	91434373	0.833333
testis_male_adult_37_years	chrX	44228105	44228106	44228105	-	RAMPAGE_only	5	5	7	0.312871	2.584963	chrX	44227538	44228147	LINE|L2|L2c	-	chrX	44147881	44225756	EFHC2|ENST00000343571.3	-	44147881,44163921,44176291,44178366,44225684	44148896,44164027,44176384,44178564,44225756	0.857143
testis_male_adult_37_years	chr3	127526838	127526909	127526872	-	RAMPAGE_only	15	16	88	3.933238	6.047333	chr3	127526392	127526877	LINE|L2|L2a	-	chr3	127514214	127531325	STRG.60930.4	-	127514214	127531325	0.670455
testis_male_adult_37_years	chr11	77571351	77571352	77571351	+	High_confidence	14	14	20	0.893918	4.021928	chr11	77570921	77571455	LTR|ERV1|LTR61	+	chr11	77571166	77575986	STRG.190096.1	+	77571166,77571514,77574210	77571310,77571685,77575986	1.000000
testis_male_adult_37_years	chr7	100349863	100349885	100349864	+	RAMPAGE_only	3	5	11	0.491655	3.459432	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336242	100353692	STRG.135308.29	+	100336242,100338178,100338772,100345864,100349716,100351251,100352563,100353209,100353372	100336337,100338264,100338889,100345968,100349887,100352478,100353123,100353270,100353692	0.545455
testis_male_adult_37_years	chr8	83693508	83693512	83693511	-	High_confidence	21	21	44	1.966619	4.658368	chr8	83693224	83694519	LTR|ERV1|LTR12C	-	chr8	83657463	83693525	STRG.149854.1	-	83657463,83693149	83657536,83693525	0.795455
testis_male_adult_37_years	chr11	12094016	12094038	12094016	+	High_confidence	66	66	184	8.224044	6.007082	chr11	12093951	12094241	LINE|L2|L2c	-	chr11	12094007	12204280	MICAL2|ENST00000532179.5	+	12094007,12162078,12204249	12094224,12162419,12204280	0.902174
testis_male_adult_37_years	chr6	22643869	22643897	22643896	+	RAMPAGE_only	4	5	12	0.536351	3.251629	chr6	22643666	22644073	LTR|ERV1|MER48	-	chr6	22645685	22647268	STRG.109786.1	+	22645685	22647268	0.500000
testis_male_adult_37_years	chr22	44147354	44147376	44147375	+	High_confidence	6	6	15	0.670438	3.521641	chr22	44147063	44147476	LINE|L2|L2	-	chr22	44147366	44169221	STRG.286444.3	+	44147366,44147860,44151482,44157981,44163857,44168601	44147480,44147922,44151551,44158083,44163930,44169221	0.800000
testis_male_adult_37_years	chr2	106063234	106063241	106063240	+	High_confidence	164	165	438	19.576801	6.845258	chr2	106063052	106063413	LTR|ERVL-MaLR|MLT1A0	+	chr2	106063293	106078155	C2orf40|ENST00000409944.5	+	106063293,106064280,106071843,106073885,106077764	106063413,106064362,106071891,106074043,106078155	0.867580
testis_male_adult_37_years	chr7	113593781	113593796	113593781	-	RAMPAGE_only	6	6	18	0.804526	3.572431	chr7	113593157	113594562	LTR|ERV1|LTR12C	+	chr7	113485007	113487843	STRG.136331.1	-	113485007	113487843	1.000000
testis_male_adult_37_years	chr1	174874418	174874427	174874418	+	High_confidence	4	4	9	0.402263	3.000000	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.666667
testis_male_adult_37_years	chr9	33815167	33815171	33815170	+	RAMPAGE_only	14	14	26	1.162093	4.133661	chr9	33814859	33815461	LINE|L1|L1MC3	+	chr9	33817183	33920403	UBE2R2|NM_017811.3	+	33817183,33886880,33900173,33911963,33917017	33817934,33886967,33900271,33912098,33920403	0.807692
testis_male_adult_37_years	chr1	187006704	187006705	187006704	-	High_confidence	55	56	58	2.592362	4.751738	chr1	187006408	187006963	LTR|ERV1|LTR12_	-	chr1	187006065	187006701	STRG.16222.1	-	187006065	187006701	0.896552
testis_male_adult_37_years	chr12	6132943	6132950	6132943	-	High_confidence	8	8	18	0.804526	3.281036	chr12	6132431	6133983	LTR|ERV1|LTR12C	+	chr12	6121176	6132966	STRG.197500.11	-	6121176,6123141,6124420,6128508,6129003,6132422	6121338,6123196,6124598,6128601,6129124,6132966	0.944444
testis_male_adult_37_years	chr7	21851147	21851208	21851189	+	High_confidence	23	23	279	12.470154	5.335351	chr7	21851065	21851438	LTR|ERVL-MaLR|THE1C	+	chr7	21851161	21907288	STRG.127848.3	+	21851161,21852466,21854314,21861852,21864534,21866469,21867858,21868863,21873273,21880701,21884290,21892424,21894622,21894883,21899335,21899979,21901006,21905758	21851320,21852631,21854455,21862023,21864657,21866663,21868007,21868991,21873501,21880893,21884410,21892667,21894805,21894999,21899448,21900120,21901255,21907288	0.971326
testis_male_adult_37_years	chr1	87528901	87528931	87528916	-	High_confidence	33	40	159	7.106647	4.946096	chr1	87528466	87529496	LTR|ERV1|LTR12D	-	chr1	87504281	87528936	STRG.9119.1	-	87504281,87528462	87504389,87528936	0.974843
testis_male_adult_37_years	chr8	86822483	86822484	86822483	+	RAMPAGE_only	20	20	21	0.938614	4.221928	chr8	86822298	86822668	LTR|ERVL-MaLR|THE1D	+	chr8	86866441	86939816	CNBD1|ENST00000517748.1	+	86866441,86887541,86905080,86939595	86866583,86887611,86905194,86939816	0.666667
testis_male_adult_37_years	chr7	130441700	130441724	130441704	-	High_confidence	3	3	10	0.446959	2.725481	chr7	130441627	130441689	LINE|L2|L2a	-	chr7	130393770	130441237	CEP41|ENST00000223208.9	-	130393770,130400038,130400706,130401880,130402647,130404563,130411121,130412178,130416918,130427954,130440933	130399039,130400254,130400821,130401948,130402799,130404708,130411191,130412240,130416966,130428018,130441237	0.900000
testis_male_adult_37_years	chr9	30575011	30575044	30575043	-	High_confidence	13	13	30	1.340877	4.481728	chr9	30574921	30576073	LTR|ERV1|LTR2752	+	chr9	30446500	30575070	STRG.159716.1	-	30446500,30574382	30446811,30575070	0.966667
testis_male_adult_37_years	chr8	98602241	98602255	98602241	-	High_confidence	40	41	73	3.262800	4.826984	chr8	98602199	98602551	LTR|ERVL-MaLR|MLT1A0	+	chr8	98547965	98602255	STK3|ENST00000523159.5	-	98547965,98579663,98596031,98602178	98548161,98579789,98596169,98602255	0.808219
testis_male_adult_37_years	chr15	63291608	63291632	63291608	+	High_confidence	3	3	9	0.402263	2.947703	chr15	63291471	63291649	LINE|CR1|L3	+	chr15	63291685	63305904	APH1B|ENST00000560716.1	+	63291685,63302344,63305613	63291997,63302472,63305904	1.000000
testis_male_adult_37_years	chr16	55481563	55481582	55481581	+	High_confidence	3	3	7	0.312871	2.807355	chr16	55480995	55481659	LTR|ERV1|MER41B	-	chr16	55481556	55506691	MMP2|NM_001127891.2	+	55481556,55482908,55484015,55485298,55485603,55488542,55489650,55491800,55493157,55496925,55498288,55502778,55505338	55481878,55483135,55484164,55485427,55485777,55488716,55489824,55491956,55493293,55497062,55498448,55502888,55506691	0.857143
testis_male_adult_37_years	chr7	118223681	118223697	118223696	+	High_confidence	3	3	8	0.357567	2.521641	chr7	118222174	118224425	LINE|L2|L2a	-	chr7	118224657	118242731	ANKRD7|NM_019644.3	+	118224657,118234430,118234700,118236040,118236789,118239908,118242348	118225009,118234545,118234874,118236147,118236926,118239998,118242731	0.875000
testis_male_adult_37_years	chr4	39641680	39641681	39641680	+	RAMPAGE_only	17	17	22	0.983310	4.011365	chr4	39641503	39641956	LTR|ERVL-MaLR|MLT1F	+	chr4	39639139	39667888	STRG.74419.1	+	39639139,39641693,39650376,39651265,39653372,39666122	39639294,39641792,39650454,39651411,39653465,39667888	0.772727
testis_male_adult_37_years	chr4	37001784	37001806	37001805	+	High_confidence	21	28	55	2.458274	5.155544	chr4	37001705	37002035	LTR|ERV1|MER48	+	chr4	37001815	37020708	AL136537.2|ENST00000562049.1	+	37001815,37018317	37001895,37020708	0.618182
testis_male_adult_37_years	chr2	88178636	88178643	88178642	+	RAMPAGE_only	6	8	11	0.491655	2.921928	chr2	88178556	88178647	LINE|L2|L2c	-	chr2	88174807	88186318	THNSL2|ENST00000496844.5	+	88174807,88175248,88178782,88182698,88182947,88185897	88174833,88175401,88179013,88182847,88183073,88186318	0.909091
testis_male_adult_37_years	chr1	165215916	165215952	165215916	+	High_confidence	3	3	11	0.491655	3.459432	chr1	165215756	165215980	SINE|MIR|MIRb	+	chr1	165215979	165219104	AL390730.2|ENST00000441773.1	+	165215979,165218592	165216141,165219104	0.909091
testis_male_adult_37_years	chr8	101262918	101262938	101262937	-	High_confidence	70	73	226	10.101272	6.249555	chr8	101262833	101263182	LTR|ERVL-MaLR|MLT1K	-	chr8	101261540	101262903	AP001330.2|ENST00000523121.1	-	101261540,101262766	101262382,101262903	0.969027
testis_male_adult_37_years	chr4	159868582	159868583	159868582	-	High_confidence	22	22	27	1.206789	4.026987	chr4	159868167	159869599	LTR|ERV1|LTR12C	-	chr4	159868153	159868697	STRG.85029.1	-	159868153	159868697	0.888889
testis_male_adult_37_years	chr13	88292769	88292770	88292769	+	High_confidence	18	18	21	0.938614	3.880180	chr13	88291636	88293083	LTR|ERV1|LTR12C	+	chr13	88292770	88293205	STRG.219022.1	+	88292770	88293205	0.857143
testis_male_adult_37_years	chr1	33021454	33021456	33021455	-	RAMPAGE_only	6	9	11	0.491655	3.277613	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.909091
testis_male_adult_37_years	chr2	147826823	147826870	147826869	-	RAMPAGE_only	3	3	12	0.536351	3.459432	chr2	147826700	147828151	LTR|ERV1|LTR12C	+	chr2	147674349	147685750	STRG.37861.1	-	147674349,147677253,147685246	147675577,147677322,147685750	0.666667
testis_male_adult_37_years	chr11	94975714	94975729	94975714	-	RAMPAGE_only	6	6	11	0.491655	3.277613	chr11	94975634	94975773	LINE|L2|L2a	+	chr11	94962621	94973612	CWC15|NM_016403.3	-	94962621,94966294,94969988,94970976,94971374,94972054,94973497	94963514,94966413,94970096,94971065,94971487,94972193,94973612	1.000000
testis_male_adult_37_years	chr12	64130521	64130564	64130521	-	High_confidence	3	3	19	0.849222	4.169925	chr12	64130008	64131894	LTR|ERVL|HERVL-int	-	chr12	64129277	64130973	STRG.204185.1	-	64129277	64130973	0.789474
testis_male_adult_37_years	chr1	220974380	220974423	220974409	+	High_confidence	9	9	26	1.162093	4.001629	chr1	220974289	220974759	LTR|ERVL-MaLR|MLT1E3	-	chr1	220974296	220975078	STRG.19430.1	+	220974296	220975078	0.653846
testis_male_adult_37_years	chr15	81331872	81331893	81331892	+	High_confidence	17	17	40	1.787836	5.080274	chr15	81331558	81332203	LTR|ERV1|MER50	+	chr15	81331910	81516976	TMC3-AS1|ENST00000560851.2	+	81331910,81332344,81341561,81358335,81361918,81380208,81516502	81332023,81332541,81341708,81358503,81362036,81380260,81516976	0.925000
testis_male_adult_37_years	chr6	140148410	140148432	140148410	-	High_confidence	7	7	31	1.385573	4.651084	chr6	140147768	140148683	LTR|ERV1|LTR12C	-	chr6	140138240	140148458	STRG.122058.1	-	140138240,140143894,140148094	140140649,140143970,140148458	0.806452
testis_male_adult_37_years	chr21	38153652	38153669	38153652	+	RAMPAGE_only	2	2	7	0.312871	2.584963	chr21	38153607	38153861	LINE|L2|L2a	-	chr21	38122331	38156511	DSCR8|ENST00000614538.1	+	38122331,38154414,38156303	38122411,38154529,38156511	0.571429
testis_male_adult_37_years	chr12	2269697	2269728	2269726	+	High_confidence	18	24	39	1.743140	4.787144	chr12	2269660	2270139	LTR|ERVL|LTR33	-	chr12	2269775	2288937	CACNA1C-IT3|ENST00000542680.1	+	2269775,2288018,2288667	2269941,2288204,2288937	0.666667
testis_male_adult_37_years	chr13	30634193	30634250	30634237	+	High_confidence	39	49	221	9.877792	4.637413	chr13	30633820	30634460	DNA|TcMar-Tigger|Tigger7	-	chr13	30634178	30660770	USPL1|NM_001321534.1	+	30634178,30637743,30642627,30646931,30653147,30657473	30634414,30637857,30642757,30647057,30653305,30660770	0.954751
testis_male_adult_37_years	chr18	42027499	42027531	42027530	+	RAMPAGE_only	6	6	13	0.581047	3.084963	chr18	42027565	42027649	DNA|hAT-Charlie|MER58B	+	chr18	42025781	42037817	PIK3C3|ENST00000590013.2	+	42025781,42027442,42029324,42033825,42037691	42025939,42027548,42029441,42033957,42037817	0.692308
testis_male_adult_37_years	chr13	108886634	108886663	108886662	+	High_confidence	38	48	138	6.168033	5.176585	chr13	108886377	108886830	LTR|ERV1|MER61D	-	chr13	108886614	109126436	STRG.221016.3	+	108886614,108888371,108898015,108910002,108957687,108961538,108962423,108964760,108992375,109008896,109019710,109046915,109052299,109055045,109055389,109100784,109120369,109125111	108886747,108888477,108898133,108910150,108957799,108961656,108962495,108964902,108992448,109009049,109019911,109046991,109052475,109055126,109055595,109100887,109120466,109126436	0.949275
testis_male_adult_37_years	chr5	101042275	101042295	101042291	-	High_confidence	8	8	23	1.028006	3.936260	chr5	101042117	101042372	SINE|Alu|AluYc	+	chr5	101012461	101042300	STRG.97819.1	-	101012461,101042095	101013096,101042300	0.652174
testis_male_adult_37_years	chr1	170639542	170639543	170639542	+	RAMPAGE_only	13	13	13	0.581047	3.392747	chr1	170639181	170639745	LTR|ERV1|LTR12F	+	chr1	170598853	170647339	AL023495.1|ENST00000413005.1	+	170598853,170639108,170646267	170599015,170639797,170647339	0.615385
testis_male_adult_37_years	chr6	127214180	127214181	127214180	-	High_confidence	224	224	259	11.576236	5.150393	chr6	127213766	127215154	LTR|ERV1|LTR12C	-	chr6	127213234	127214196	STRG.120968.1	-	127213234	127214196	0.972973
testis_male_adult_37_years	chr7	112441632	112441678	112441632	-	RAMPAGE_only	48	49	147	6.570296	4.965877	chr7	112441453	112441741	LTR|ERVL-MaLR|MLT1O	-	chr7	112433275	112433641	STRG.136202.1	-	112433275	112433641	0.904762
testis_male_adult_37_years	chr2	231072232	231072255	231072232	+	RAMPAGE_only	8	8	19	0.849222	3.681881	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231066903	231075566	PSMD1|ENST00000444007.1	+	231066903,231070024,231072332,231075510	231067111,231070168,231072415,231075566	0.578947
testis_male_adult_37_years	chr8	69356952	69356973	69356952	+	High_confidence	6	6	20	0.893918	3.384184	chr8	69351385	69357434	LINE|L1|L1PA3	-	chr8	69356955	69358680	STRG.147868.1	+	69356955,69358547	69357437,69358680	0.950000
testis_male_adult_37_years	chr19	37465439	37465463	37465439	-	RAMPAGE_only	5	5	24	1.072701	4.303509	chr19	37464765	37465454	LINE|L2|L2a	+	chr19	37411154	37467229	ZNF569|ENST00000392149.6	-	37411154,37425867,37426251,37444906,37467086	37414419,37425963,37426378,37444964,37467229	0.750000
testis_male_adult_37_years	chr11	77161894	77161913	77161894	+	RAMPAGE_only	2	3	7	0.312871	2.521641	chr11	77161863	77162013	SINE|MIR|MIR3	+	chr11	77130352	77214954	STRG.190042.6	+	77130352,77142708,77147797,77155906,77156659,77156861,77157278,77158276,77159446,77160162,77160972,77162119,77162852,77166055,77172747,77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77194353,77197480,77198494,77199648,77201447,77202299,77204075,77205461,77206096,77207288,77208429,77208696,77211151,77211820,77212951,77213859,77214606	77130652,77142822,77147950,77156091,77156781,77157004,77157392,77158430,77159523,77160282,77161115,77162330,77162988,77166162,77172885,77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77192278,77194524,77197598,77198621,77199818,77201638,77203217,77204229,77205617,77206202,77207402,77208517,77208803,77211337,77211937,77213035,77213979,77214954	0.857143
testis_male_adult_37_years	chr3	45068288	45068315	45068288	+	High_confidence	21	21	88	3.933238	5.906827	chr3	45067734	45068317	LTR|ERVL?|LTR89	+	chr3	45068121	45082550	STRG.53093.1	+	45068121,45081652,45082256	45068343,45081874,45082550	0.818182
testis_male_adult_37_years	chr19	49086488	49086547	49086546	+	High_confidence	18	18	68	3.039321	5.246348	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.808824
testis_male_adult_37_years	chr10	92826787	92826833	92826787	+	High_confidence	2	2	14	0.625742	3.085055	chr10	92826510	92827023	LINE|L2|L2a	-	chr10	92826830	93059494	EXOC6|NM_001013848.3	+	92826830,92834712,92893348,92894793,92894929,92899598,92909426,92915757,92919981,92928338,92934143,92934309,92935813,92940726,92948273,92952272,92954629,92955579,92974052,92997473,93014193,93056923,93058222	92826944,92834824,92893520,92894841,92895020,92899644,92909631,92915913,92920050,92928422,92934190,92934430,92935885,92940824,92948379,92952382,92954741,92955714,92974232,92997615,93014267,93057036,93059494	0.785714
testis_male_adult_37_years	chr1	201878989	201878990	201878989	+	RAMPAGE_only	6	6	8	0.357567	2.807355	chr1	201878845	201879289	LINE|CR1|L3	+	chr1	201847294	201884294	STRG.17866.2	+	201847294,201847551,201848392,201852103,201853010,201854594,201854822,201855123,201855782,201857095,201858446,201858854,201866732,201868492,201869589,201870582,201872827,201874249,201874831,201875151,201875943	201847340,201847638,201848594,201852192,201853097,201854714,201854923,201855182,201855934,201857194,201858553,201863607,201866959,201868796,201869718,201871327,201872961,201874372,201874936,201875228,201884294	0.750000
testis_male_adult_37_years	chr3	118559123	118559132	118559123	-	RAMPAGE_only	2	2	6	0.268175	2.584963	chr3	118559027	118561028	LINE|L1|L1ME2z	-	chr3	118508410	118557667	AC068633.1|ENST00000476460.1	-	118508410,118550819,118557596	118508692,118550924,118557667	0.833333
testis_male_adult_37_years	chr21	34087763	34087766	34087765	+	RAMPAGE_only	11	18	22	0.983310	4.186704	chr21	34087381	34088035	LINE|L2|L2a	-	chr21	34073569	34143034	STRG.281265.6	+	34073569,34092271,34142407	34092145,34125480,34143034	0.954545
testis_male_adult_37_years	chr13	40481124	40481132	40481131	+	High_confidence	27	28	62	2.771145	5.492133	chr13	40480963	40481330	LINE|L2|L2c	-	chr13	40481094	40483964	STRG.213809.1	+	40481094	40483964	0.887097
testis_male_adult_37_years	chr2	229232042	229232054	229232053	-	High_confidence	5	5	12	0.536351	3.418296	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.500000
testis_male_adult_37_years	chr2	181954332	181954359	181954340	+	High_confidence	15	15	54	2.413578	5.273406	chr2	181954369	181954454	DNA|hAT-Charlie|MER119	+	chr2	181954328	182117511	STRG.40856.1	+	181954328,181975218,181987838,182061441,182063730,182117206	181954634,181975264,181987899,182061479,182063791,182117511	0.944444
testis_male_adult_37_years	chr1	217785151	217785164	217785153	-	High_confidence	5	8	16	0.715134	3.452820	chr1	217784892	217785262	LTR|ERVL-MaLR|MLT1C	-	chr1	217781197	217785120	SPATA17-AS1|NR_125784.1	-	217781197,217782124,217784961	217781283,217782299,217785120	0.812500
testis_male_adult_37_years	chr6	84219823	84219864	84219863	-	RAMPAGE_only	2	2	7	0.312871	2.807355	chr6	84219730	84220102	LINE|L2|L2c	-	chr6	84124240	84227596	CEP162|ENST00000257766.8	-	84124240,84126377,84146686,84149561,84152544,84155297,84160811,84161745,84163143,84169327,84171605,84174047,84174726,84175213,84185186,84186331,84193608,84194883,84200788,84201736,84203980,84212956,84215281,84215775,84217798,84221056,84227579	84125276,84126512,84146785,84149703,84153179,84155510,84160916,84161909,84163270,84169433,84171718,84174188,84174954,84175347,84185448,84186623,84193690,84195075,84200905,84201767,84204096,84213024,84215465,84215922,84217860,84221171,84227596	1.000000
testis_male_adult_37_years	chr4	8436023	8436026	8436023	-	RAMPAGE_only	13	13	27	1.206789	4.286790	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.518519
testis_male_adult_37_years	chr16	75318116	75318128	75318116	-	RAMPAGE_only	3	4	11	0.491655	3.121928	chr16	75317828	75318154	SINE|Alu|AluSx	+	chr16	75293697	75306545	CFDP1|ENST00000570103.5	-	75293697,75305023,75306386	75294042,75305182,75306545	0.909091
testis_male_adult_37_years	chr11	72111455	72111497	72111496	-	High_confidence	3	4	13	0.581047	3.418296	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.846154
testis_male_adult_37_years	chrX	78140620	78140651	78140646	-	High_confidence	3	3	10	0.446959	3.169925	chrX	78140499	78140874	LINE|L2|L2	+	chrX	78129750	78141156	STRG.293486.1	-	78129750,78133337,78136914,78137748,78137961,78138842,78139560,78140947	78131773,78133448,78136990,78137883,78138098,78138924,78139686,78141156	0.900000
testis_male_adult_37_years	chr2	191614999	191615028	191615027	+	RAMPAGE_only	8	8	17	0.759830	3.852169	chr2	191614746	191615098	LTR|ERV1|MER57D	-	chr2	191678071	191688522	NABP1|NR_045622.1	+	191678071,191678989,191681945,191682491,191683728,191684229,191685598	191678241,191679128,191682017,191682595,191683804,191684296,191688522	0.588235
testis_male_adult_37_years	chrX	135768190	135768191	135768190	-	High_confidence	49	50	58	2.592362	5.253600	chrX	135767891	135768249	LTR|ERVL|LTR41	-	chrX	135760156	135768191	CT45A3|ENST00000598716.2	-	135760156,135761633,135762107,135764275,135768107	135760409,135761727,135762356,135764450,135768191	0.965517
testis_male_adult_37_years	chr11	79021810	79021819	79021810	-	High_confidence	3	3	10	0.446959	3.121928	chr11	79021800	79021863	SINE|MIR|MIR3	+	chr11	78924455	79021793	TENM4|ENST00000529798.1	-	78924455,79014570,79021574	78924746,79014750,79021793	0.500000
testis_male_adult_37_years	chr4	86021989	86022049	86022010	-	RAMPAGE_only	7	7	42	1.877227	4.606138	chr4	86020510	86022172	LTR|ERV1|LTR12C	-	chr4	86016533	86031972	MAPK10|ENST00000641130.1	-	86016533,86029196,86031367	86017370,86029274,86031972	0.976190
testis_male_adult_37_years	chr3	174211233	174211234	174211233	-	High_confidence	76	77	85	3.799151	5.069668	chr3	174210920	174212537	LTR|ERV1|LTR12C	-	chr3	174210873	174211221	STRG.66192.1	-	174210873	174211221	0.764706
testis_male_adult_37_years	chr2	33797847	33797852	33797847	+	High_confidence	44	45	69	3.084017	4.575336	chr2	33797498	33798174	LTR|ERV1|LTR12	+	chr2	33797843	33800892	STRG.26676.1	+	33797843	33800892	0.927536
testis_male_adult_37_years	chr16	72073244	72073245	72073244	+	High_confidence	7	7	10	0.446959	2.921928	chr16	72072861	72073376	LTR|ERV1|LTR10B	+	chr16	72074094	72077165	STRG.247458.1	+	72074094,72075144,72076302	72074385,72075219,72077165	0.900000
testis_male_adult_37_years	chr15	68183651	68183665	68183664	+	RAMPAGE_only	3	3	8	0.357567	3.000000	chr15	68183714	68185681	DNA|TcMar-Tigger|Tigger3	+	chr15	68181210	68190758	PIAS1|ENST00000563996.1	+	68181210,68187541,68189202,68190492	68181354,68188231,68189270,68190758	1.000000
testis_male_adult_37_years	chr9	131126035	131126076	131126057	+	High_confidence	3	3	18	0.804526	3.410417	chr9	131126006	131126132	SINE|MIR|MIRb	-	chr9	131126079	131129311	NUP214|ENST00000531584.1	+	131126079,131126411,131127523,131128331,131129278	131126194,131126460,131127719,131128483,131129311	0.666667
testis_male_adult_37_years	chr9	95729976	95729987	95729986	+	High_confidence	15	15	25	1.117397	3.970176	chr9	95729663	95730177	LTR|ERV1|LTR12	+	chr9	95730004	95730662	STRG.165035.1	+	95730004	95730662	0.920000
testis_male_adult_37_years	chr2	240024551	240024559	240024553	-	High_confidence	3	5	9	0.402263	2.750000	chr2	240023770	240024818	LINE|L1|L1MC3	+	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.777778
testis_male_adult_37_years	chr15	77660043	77660063	77660062	+	High_confidence	4	4	19	0.849222	2.599666	chr15	77660081	77660202	SINE|MIR|MIRc	+	chr15	77660051	77668074	LINGO1-AS2|ENST00000557799.1	+	77660051,77666959,77667670	77660183,77667086,77668074	0.947368
testis_male_adult_37_years	chr2	159419865	159419889	159419888	-	High_confidence	34	34	197	8.805091	6.742311	chr2	159419885	159419941	SINE|MIR|MIR3	-	chr2	159400598	159419867	BAZ2B|ENST00000482501.5	-	159400598,159404848,159405021,159412334,159419779	159400664,159404910,159405114,159412545,159419867	0.741117
testis_male_adult_37_years	chr1	150457305	150457323	150457313	+	RAMPAGE_only	2	2	9	0.402263	3.000000	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150364710	150473556	RPRD2|ENST00000369068.4	+	150364710,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150364919,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	0.888889
testis_male_adult_37_years	chr14	102947722	102947729	102947726	-	RAMPAGE_only	5	5	14	0.625742	3.700440	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.714286
testis_male_adult_37_years	chr2	164993838	164993862	164993838	+	RAMPAGE_only	2	2	13	0.581047	3.418296	chr2	164993632	164993938	LTR|ERV1|LTR9	-	chr2	164995147	165091387	STRG.39453.1	+	164995147,165091119	164995328,165091387	0.615385
testis_male_adult_37_years	chr10	17386911	17386936	17386935	+	High_confidence	86	86	306	13.676943	5.909789	chr10	17386606	17386994	LTR|ERV1|MER48	-	chr10	17386935	17408286	ST8SIA6-AS1|NR_034129.1	+	17386935,17399104,17407967	17387075,17399202,17408286	0.856209
testis_male_adult_37_years	chr6	113184395	113184421	113184420	-	High_confidence	8	8	26	1.162093	4.363713	chr6	113184368	113184825	LTR|ERVL-MaLR|MLT1B	-	chr6	113184056	113184427	STRG.118903.1	-	113184056	113184427	0.653846
testis_male_adult_37_years	chr11	65427837	65428525	65428524	+	RAMPAGE_only	30	30	824	36.829415	7.096528	chr11	65428531	65428593	DNA|hAT-Tip100|MamRep4096	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998786
testis_male_adult_37_years	chr10	69495121	69495141	69495134	+	High_confidence	7	7	19	0.849222	3.947703	chr10	69494989	69495143	SINE|MIR|MIR3	+	chr10	69495134	69506995	TSPAN15|ENST00000459981.1	+	69495134,69495593,69498279,69504437,69506123,69506828	69495423,69495689,69498396,69504485,69506240,69506995	0.894737
testis_male_adult_37_years	chr4	93319777	93319803	93319794	-	High_confidence	5	5	13	0.581047	3.022055	chr4	93319491	93320042	LTR|ERVL-MaLR|MLT1E2	+	chr4	93318622	93319786	AC110800.1|ENST00000505498.1	-	93318622,93319598	93318875,93319786	0.846154
testis_male_adult_37_years	chr4	11722463	11722499	11722463	+	High_confidence	11	16	62	2.771145	5.508880	chr4	11722242	11722729	LTR|ERVL-MaLR|MLT1F1	+	chr4	11722450	11778466	STRG.70523.1	+	11722450,11770308,11778185	11722615,11770475,11778466	0.532258
testis_male_adult_37_years	chr15	24245017	24245049	24245036	+	RAMPAGE_only	8	10	22	0.983310	3.697846	chr15	24244958	24245353	LTR|ERV1|LTR38-int	-	chr15	24261278	24276829	AC087463.4|ENST00000566676.1	+	24261278,24274790,24276466	24261332,24274952,24276829	0.590909
testis_male_adult_37_years	chr8	99893444	99893492	99893471	-	High_confidence	11	11	69	3.084017	4.607386	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	0.985507
testis_male_adult_37_years	chr5	99410587	99410611	99410598	+	RAMPAGE_only	9	9	33	1.474964	4.536670	chr5	99409838	99410830	LTR|ERV1|LTR12D	-	chr5	99533989	99577954	CTD-2151A2.1|NR_110562.1	+	99533989,99537849,99549412,99577722	99534598,99537921,99549532,99577954	0.575758
testis_male_adult_37_years	chr8	38867730	38867769	38867757	-	High_confidence	13	13	50	2.234795	3.892985	chr8	38867704	38868481	LTR|ERV1|LTR17	-	chr8	38863030	38868040	STRG.145673.1	-	38863030	38868040	0.960000
testis_male_adult_37_years	chr4	158795821	158795856	158795821	+	High_confidence	2	2	11	0.491655	3.321928	chr4	158795632	158795972	DNA|hAT-Charlie|MER1B	+	chr4	158795853	158829142	FNIP2|ENST00000505445.1	+	158795853,158808589,158825915,158829078	158796024,158808711,158826042,158829142	0.545455
testis_male_adult_37_years	chr5	138170346	138170361	138170360	-	RAMPAGE_only	4	4	12	0.536351	3.027169	chr5	138170278	138170360	DNA|hAT-Ac|OldhAT1	+	chr5	138156881	138177667	BRD8|ENST00000441656.5	-	138156881,138160068,138160890,138161795,138162053,138163129,138164086,138164319,138164713,138165827,138167933,138168469,138169221,138170344,138170831,138171037,138171360,138172064,138177570	138157267,138160173,138161068,138161864,138162146,138163344,138164133,138164413,138165166,138166108,138168078,138168688,138169349,138170409,138170912,138171160,138171410,138172134,138177667	0.583333
testis_male_adult_37_years	chr16	74485813	74485828	74485827	-	RAMPAGE_only	3	3	12	0.536351	3.584963	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	1.000000
testis_male_adult_37_years	chr1	50451747	50451757	50451756	+	RAMPAGE_only	11	11	22	0.983310	3.845351	chr1	50451712	50451824	SINE|MIR|MIR3	-	chr1	50461468	50471150	AL049637.1|ENST00000424664.1	+	50461468,50462191,50469437,50470733,50471060	50461496,50462313,50469544,50470889,50471150	0.681818
testis_male_adult_37_years	chr4	31506422	31506454	31506453	+	High_confidence	19	19	67	2.994625	5.344354	chr4	31501795	31507425	LTR|ERVL|HERVL-int	+	chr4	31506438	31557661	STRG.73307.1	+	31506438,31557498	31506825,31557661	0.716418
testis_male_adult_37_years	chr5	139364636	139364648	139364647	+	RAMPAGE_only	3	3	8	0.357567	2.750000	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	1.000000
testis_male_adult_37_years	chr19	12034741	12034763	12034741	-	High_confidence	2	2	9	0.402263	2.641604	chr19	12034679	12035024	LTR|ERV1|MER4D	+	chr19	12016401	12035669	ZNF433|ENST00000455504.6	-	12016401,12017875,12018165,12034827,12035536	12016666,12017936,12018380,12034874,12035669	0.666667
testis_male_adult_37_years	chr4	109212330	109212355	109212334	-	RAMPAGE_only	26	27	110	4.916548	6.046816	chr4	109212119	109212591	LTR|ERVL-MaLR|MLT1G3	-	chr4	108823875	109302367	COL25A1|NM_001256074.1	-	108823875,108827134,108832379,108834354,108838097,108841694,108844518,108845188,108846138,108848758,108852235,108859655,108860926,108863318,108869087,108884177,108889220,108889700,108896666,108899153,108901118,108918171,108920577,108937807,108940538,108942208,108974366,108974532,109010357,109048167,109050134,109300582,109301722	108824227,108827188,108832433,108834390,108838178,108841721,108844569,108845251,108846219,108848803,108852280,108859733,108860971,108863387,108869150,108884222,108889256,108889733,108896711,108899180,108901172,108918216,108920604,108937843,108940646,108942268,108974393,108974559,109010375,109048175,109050179,109300652,109302367	0.590909
testis_male_adult_37_years	chr21	38121458	38121492	38121472	+	High_confidence	198	202	581	25.968313	6.489367	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.925990
testis_male_adult_37_years	chr13	108886769	108886780	108886779	+	High_confidence	6	7	17	0.759830	3.454822	chr13	108886377	108886830	LTR|ERV1|MER61D	-	chr13	108886614	109126436	STRG.221016.3	+	108886614,108888371,108898015,108910002,108957687,108961538,108962423,108964760,108992375,109008896,109019710,109046915,109052299,109055045,109055389,109100784,109120369,109125111	108886747,108888477,108898133,108910150,108957799,108961656,108962495,108964902,108992448,109009049,109019911,109046991,109052475,109055126,109055595,109100887,109120466,109126436	0.882353
testis_male_adult_37_years	chr7	818433	818445	818433	+	RAMPAGE_only	6	6	16	0.715134	3.875000	chr7	818112	818870	LINE|L1|L1MB5	-	chr7	816754	842086	SUN1|ENST00000439679.5	+	816754,832019,832504,838797,841945	816871,832101,832601,838986,842086	0.625000
testis_male_adult_37_years	chr6	115716385	115716420	115716385	-	High_confidence	31	31	49	2.190099	3.960501	chr6	115715946	115716480	LTR|ERV1|LTR12D	-	chr6	115716017	115716454	STRG.119037.1	-	115716017	115716454	0.897959
testis_male_adult_37_years	chr18	71212611	71212635	71212615	+	High_confidence	15	18	40	1.787836	4.784184	chr18	71211548	71213041	LTR|ERV1|LTR12C	-	chr18	71212611	71624527	STRG.264156.1	+	71212611,71395118,71547970,71623877	71213089,71395199,71548055,71624527	0.825000
testis_male_adult_37_years	chr10	662890	662906	662890	+	RAMPAGE_only	26	27	53	2.368882	5.156889	chr10	662485	662890	DNA|TcMar-Tigger|Tigger13a	+	chr10	650076	669581	PRR26|ENST00000381489.6	+	650076,662025,662790	650442,662118,669581	0.981132
testis_male_adult_37_years	chr20	421150	421173	421150	+	High_confidence	4	4	18	0.804526	3.852169	chr20	421066	421264	SINE|MIR|MIRb	-	chr20	421941	427488	RBCK1|ENST00000621487.1	+	421941,427312	422238,427488	0.500000
testis_male_adult_37_years	chr3	2083607	2083645	2083607	-	High_confidence	12	12	58	2.592362	5.064917	chr3	2083449	2085084	LTR|ERV1|LTR12C	+	chr3	2081564	2084118	STRG.47544.1	-	2081564	2084118	0.637931
testis_male_adult_37_years	chr1	6200878	6200879	6200878	-	High_confidence	5	6	7	0.312871	2.584963	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.857143
testis_male_adult_37_years	chr7	12595559	12595587	12595559	+	High_confidence	2	2	11	0.491655	3.121928	chr7	12595509	12595597	LTR|ERV1|HERVFH21-int	-	chr7	12595548	12625071	SCIN|ENST00000486980.5	+	12595548,12604513,12622800,12625009	12595801,12604663,12622893,12625071	0.727273
testis_male_adult_37_years	chr1	74634832	74634868	74634837	-	High_confidence	26	27	111	4.961244	5.782737	chr1	74634769	74634985	LTR?|LTR?|MamRep605	+	chr1	74589326	74634855	ERICH3|ENST00000420661.6	-	74589326,74599694,74606600,74612622,74620733,74631712,74634664	74590080,74599931,74606902,74612809,74620914,74631928,74634855	0.963964
testis_male_adult_37_years	chr2	149118162	149118181	149118180	+	High_confidence	53	54	86	3.843847	5.989497	chr2	149117761	149118263	LTR|ERVL-MaLR|MLT1F	-	chr2	149118173	149215258	LYPD6B|NM_001317002.1	+	149118173,149119102,149130882,149160763,149205252,149208313,149212991,149214545	149118265,149119163,149130953,149160835,149205404,149208412,149213122,149215258	0.500000
testis_male_adult_37_years	chr10	119396143	119396166	119396165	+	High_confidence	5	5	17	0.759830	3.852169	chr10	119396086	119396244	SINE|MIR|MIR	-	chr10	119396064	119429118	STRG.180913.2	+	119396064,119396694,119423165,119424992	119396244,119396772,119423266,119429118	0.529412
testis_male_adult_37_years	chr2	238299943	238299971	238299970	-	RAMPAGE_only	9	9	19	0.849222	3.947703	chr2	238299957	238300152	LTR|ERVL|ERV3-16A3_I-int	+	chr2	238275862	238290102	PER2|ENST00000431832.1	-	238275862,238277130,238277706,238289898	238275897,238277193,238277955,238290102	0.578947
testis_male_adult_37_years	chr19	51886863	51886881	51886863	-	RAMPAGE_only	4	5	15	0.670438	3.664498	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51878400	51887889	ZNF577|ENST00000638538.1	-	51878400,51880322,51880678,51886115,51886820,51887831	51878515,51880401,51880877,51886145,51886912,51887889	0.666667
testis_male_adult_37_years	chr3	171796193	171796212	171796193	-	RAMPAGE_only	4	4	10	0.446959	3.169925	chr3	171796094	171796227	LINE|L2|L2b	-	chr3	171713877	171810437	PLD1|ENST00000498278.5	-	171713877,171724695,171726017,171733443,171734864,171735491,171737531,171737891,171810398	171714045,171724788,171726076,171733509,171734970,171735637,171737659,171738082,171810437	0.500000
testis_male_adult_37_years	chr12	88055186	88055227	88055203	+	High_confidence	19	26	66	2.949929	3.537001	chr12	88054554	88055473	LINE|L2|L2a	-	chr12	88055216	88058936	STRG.206421.1	+	88055216,88056906	88055272,88058936	0.939394
testis_male_adult_37_years	chr4	79086099	79086178	79086177	+	High_confidence	11	11	46	2.056011	4.755866	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.717391
testis_male_adult_37_years	chr5	140700424	140700452	140700445	+	High_confidence	372	558	1367	61.099284	5.076467	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.975860
testis_male_adult_37_years	chr9	33583180	33583203	33583202	+	RAMPAGE_only	6	6	13	0.581047	3.334679	chr9	33582567	33584130	LTR|ERVL-MaLR|MSTA-int	+	chr9	33580694	33605282	CYP4F26P|ENST00000433357.2	+	33580694,33602500,33602811,33603271,33605010	33580762,33602625,33602919,33603550,33605282	0.769231
testis_male_adult_37_years	chr10	13332005	13332006	13332005	-	RAMPAGE_only	5	5	8	0.357567	3.000000	chr10	13331741	13332516	LINE|L1|L1MB7	+	chr10	13317438	13347665	STRG.170655.2	-	13317438,13322834,13328350,13329697,13333816,13336242,13338704,13344757,13347276	13319356,13323047,13328450,13329788,13333971,13336350,13338808,13345028,13347665	0.875000
testis_male_adult_37_years	chr5	117404353	117404367	117404366	+	High_confidence	9	9	15	0.670438	3.378783	chr5	117404246	117404537	SINE|Alu|AluYc	-	chr5	117404373	117405871	STRG.99490.1	+	117404373	117405871	0.800000
testis_male_adult_37_years	chr15	98103717	98103718	98103717	-	High_confidence	542	543	645	28.828850	5.222876	chr15	98103301	98104789	LTR|ERV1|LTR12C	-	chr15	98044356	98103712	STRG.240877.3	-	98044356,98103234	98046739,98103712	0.934884
testis_male_adult_37_years	chr20	48359906	48359917	48359906	+	High_confidence	2	2	9	0.402263	2.500000	chr20	48359855	48360168	LINE|L2|L2b	+	chr20	48359910	48370638	LINC00494|NR_026958.1	+	48359910,48364888,48366473,48366735,48368079	48360150,48365197,48366633,48367059,48370638	0.555556
testis_male_adult_37_years	chr12	87330889	87330925	87330889	+	High_confidence	4	4	25	1.117397	4.243856	chr12	87330784	87330936	SINE|Alu|AluY	+	chr12	87330738	87332321	LOC105369879|NR_135020.1	+	87330738,87331929	87331065,87332321	1.000000
testis_male_adult_37_years	chr1	51801093	51801108	51801107	-	High_confidence	25	26	69	3.084017	5.513646	chr1	51800859	51801103	SINE|Alu|AluJr	-	chr1	51794471	51801094	NRDC|ENST00000497358.1	-	51794471,51794822,51798248,51800555,51800856	51794610,51794854,51798411,51800683,51801094	0.898551
testis_male_adult_37_years	chr5	50779424	50779427	50779424	+	RAMPAGE_only	3	4	8	0.357567	2.807355	chr5	50779256	50779700	LTR|ERVL-MaLR|MLT1G1	-	chr5	50667892	50842342	PARP8|ENST00000503561.7	+	50667892,50750150,50759642,50761820,50763147,50778068,50778559,50788522,50794206,50794852,50796981,50797137,50815431,50822334,50824907,50826754,50827943,50828311,50829891,50832780,50833978,50834841,50841965	50668125,50750188,50759732,50761898,50763242,50778129,50778650,50788589,50794332,50795417,50797032,50797233,50815524,50822400,50824975,50826803,50828056,50828384,50829961,50832854,50834048,50835015,50842342	0.750000
testis_male_adult_37_years	chr14	94581941	94581946	94581945	+	High_confidence	11	11	19	0.849222	3.947703	chr14	94581782	94581952	DNA|hAT-Charlie|MER20	+	chr14	94581970	94587435	SERPINA5|ENST00000556064.1	+	94581970,94587345	94582342,94587435	0.631579
testis_male_adult_37_years	chr19	7006395	7006436	7006411	-	High_confidence	28	28	126	5.631682	5.715094	chr19	7006265	7006561	LTR|ERVL-MaLR|MLT1K	-	chr19	7004952	7006415	FLJ25758|NR_024372.1	-	7004952	7006415	0.984127
testis_male_adult_37_years	chr22	36889451	36889465	36889464	-	High_confidence	8	8	14	0.625742	3.521641	chr22	36889236	36889561	SINE|Alu|AluY	+	chr22	36888485	36889484	STRG.285493.1	-	36888485	36889484	0.928571
testis_male_adult_37_years	chr15	62690402	62690422	62690402	-	High_confidence	3	4	11	0.491655	3.321928	chr15	62689894	62691060	Retroposon|SVA|SVA_D	-	chr15	62682915	62690448	AC100839.1|ENST00000559589.1	-	62682915,62683981,62687818,62690244	62683056,62684104,62687927,62690448	0.545455
testis_male_adult_37_years	chr3	151440717	151440780	151440779	-	High_confidence	11	11	49	2.190099	4.831760	chr3	151440657	151440826	DNA|hAT-Charlie|MER5B	-	chr3	151436522	151440780	IGSF10|ENST00000493841.1	-	151436522,151440727	151438597,151440780	0.979592
testis_male_adult_37_years	chr1	170174366	170174383	170174382	+	High_confidence	4	4	11	0.491655	3.321928	chr1	170174213	170174451	LINE|L2|L2b	+	chr1	170174409	170175088	STRG.14744.1	+	170174409	170175088	0.636364
testis_male_adult_37_years	chr10	2207769	2207808	2207807	+	High_confidence	16	16	48	2.145403	5.171610	chr10	2207441	2208112	LTR|ERV1|MER50B	+	chr10	2207821	2223465	STRG.169105.1	+	2207821,2212234,2221852	2207840,2212289,2223465	0.562500
testis_male_adult_37_years	chr11	108786503	108786520	108786519	+	RAMPAGE_only	5	5	9	0.402263	3.169925	chr11	108785418	108787650	LINE|L1|L1PA16	-	chr11	108665121	108922243	DDX10|ENST00000526794.1	+	108665121,108673466,108675595,108677084,108678314,108679370,108688935,108691875,108693515,108706738,108715878,108719796,108722996,108838445,108841314,108852152,108917872	108665339,108673527,108675726,108677243,108678435,108679560,108689062,108692038,108693600,108706837,108715966,108719885,108723462,108838565,108841476,108852209,108922243	0.666667
testis_male_adult_37_years	chr18	5748798	5748815	5748806	+	High_confidence	51	58	154	6.883167	5.784884	chr18	5748596	5749144	LTR|ERVL-MaLR|MLT1F2	+	chr18	5748818	5793993	STRG.259146.1	+	5748818,5760987,5762297,5769762,5793586	5748964,5761047,5762473,5769866,5793993	0.948052
testis_male_adult_37_years	chr3	108165465	108165474	108165473	-	RAMPAGE_only	5	5	10	0.446959	2.947703	chr3	108165378	108165542	DNA|hAT-Ac|OldhAT1	+	chr3	108160811	108222570	IFT57|NM_018010.3	-	108160811,108163662,108165430,108166853,108167792,108191520,108206627,108213930,108218534,108219409,108222110	108162655,108163729,108165493,108166985,108167864,108191643,108206696,108214021,108218653,108219572,108222570	0.900000
testis_male_adult_37_years	chr2	150628878	150628914	150628893	+	High_confidence	41	41	116	5.184723	5.963374	chr2	150628643	150628961	DNA|hAT-Tip100|MER45C	-	chr2	150628896	150635357	LOC101929282|NR_110244.1	+	150628896,150629639,150632266,150634635,150635185	150629121,150629714,150632396,150634739,150635357	0.887931
testis_male_adult_37_years	chr15	55397106	55397130	55397106	-	RAMPAGE_only	3	3	10	0.446959	2.721928	chr15	55396923	55397238	SINE|Alu|AluY	+	chr15	55371986	55398268	CCPG1|ENST00000570272.5	-	55371986,55376948,55378299,55385599,55389364,55398219	55372044,55377150,55378376,55385714,55389433,55398268	0.600000
testis_male_adult_37_years	chr3	134485443	134485490	134485443	-	High_confidence	10	10	67	2.994625	5.021419	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.865672
testis_male_adult_37_years	chr2	73925210	73925253	73925252	+	RAMPAGE_only	5	5	14	0.625742	3.700440	chr2	73924927	73925456	LTR|ERV1|MER51A	-	chr2	73926825	73958961	DGUOK|NR_134893.1	+	73926825,73946718,73958145,73958709	73927052,73946906,73958245,73958961	0.571429
testis_male_adult_37_years	chr5	19142470	19142517	19142470	-	High_confidence	5	5	20	0.893918	3.431624	chr5	19142064	19143334	LTR|ERV1|LTR12E	-	chr5	18965860	19142346	AC106744.1|ENST00000504827.1	-	18965860,19142057	18966231,19142346	0.700000
testis_male_adult_37_years	chr8	11795664	11795693	11795667	+	High_confidence	4	4	16	0.715134	3.500000	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	1.000000
testis_male_adult_37_years	chr1	154671558	154671559	154671558	+	High_confidence	4	4	7	0.312871	2.807355	chr1	154670567	154671998	LTR|ERV1|LTR12C	+	chr1	154671609	154677848	STRG.13805.1	+	154671609,154677613	154672084,154677848	1.000000
testis_male_adult_37_years	chr14	29064677	29064691	29064690	+	High_confidence	3	3	9	0.402263	3.169925	chr14	29064362	29064725	LTR|ERVL-MaLR|MLT1A0	-	chr14	29063725	29073183	STRG.223297.1	+	29063725	29073183	0.666667
testis_male_adult_37_years	chr12	124786762	124786786	124786762	+	High_confidence	8	9	33	1.474964	4.449699	chr12	124786793	124786911	LTR|ERVL-MaLR|MLT1J2	+	chr12	124786814	124789503	STRG.210174.1	+	124786814,124788506	124786892,124789503	0.969697
testis_male_adult_37_years	chr3	16536300	16536313	16536312	+	High_confidence	17	27	61	2.726449	4.971212	chr3	16536103	16536551	LTR|ERVL-MaLR|MLT1J	+	chr3	16536317	16541373	LINC00690|NR_103843.1	+	16536317,16539375,16540334	16536494,16539526,16541373	0.819672
testis_male_adult_37_years	chr12	88722463	88722490	88722489	-	High_confidence	3	5	12	0.536351	3.084963	chr12	88722408	88722680	SINE|Alu|AluY	-	chr12	88721814	88722239	STRG.206410.1	-	88721814	88722239	0.750000
testis_male_adult_37_years	chr2	238722534	238722535	238722534	-	High_confidence	48	49	69	3.084017	4.446544	chr2	238722222	238723256	LTR|ERV1|LTR12D	-	chr2	238711377	238722609	STRG.46912.1	-	238711377,238712510,238715877,238721814	238711697,238712764,238715933,238722609	0.956522
testis_male_adult_37_years	chr11	78139172	78139203	78139172	-	High_confidence	2	2	7	0.312871	2.807355	chr11	78138792	78139208	LINE|L2|L2b	+	chr11	78121136	78139258	ALG8|ENST00000530910.5	-	78121136,78124020,78127357,78138709	78121174,78124214,78127436,78139258	1.000000
testis_male_adult_37_years	chr12	90917970	90918002	90917970	-	High_confidence	11	13	48	2.145403	4.854977	chr12	90917467	90918222	LTR|ERV1|LTR60B	-	chr12	90917662	90917976	STRG.207088.1	-	90917662	90917976	0.520833
testis_male_adult_37_years	chr13	57286792	57286877	57286847	+	High_confidence	5	5	35	1.564356	4.771143	chr13	57285459	57287161	LTR|ERV1|LTR12C	-	chr13	57286475	57725293	STRG.215802.1	+	57286475,57469520,57629814,57666467,57666660,57724611	57287202,57469621,57635111,57666526,57666833,57725293	0.800000
testis_male_adult_37_years	chr19	10207161	10207174	10207173	-	RAMPAGE_only	5	5	14	0.625742	3.324863	chr19	10207087	10207548	LTR|ERVL-MaLR|MLT1F	+	chr19	10175539	10201192	DNMT1|ENST00000588118.5	-	10175539,10177291,10180349,10180777,10182040,10194819,10200873,10201118	10175618,10177367,10180569,10180885,10182077,10195054,10201017,10201192	0.642857
testis_male_adult_37_years	chr20	7996617	7996632	7996631	-	RAMPAGE_only	10	16	24	1.072701	4.349649	chr20	7996149	7997206	LINE|L2|L2b	+	chr20	7977347	8019829	TMX4|ENST00000246024.6	-	7977347,7983793,7987287,7996025,7999731,8001495,8010199,8019437	7982621,7983857,7987389,7996071,7999860,8001541,8010315,8019829	0.541667
testis_male_adult_37_years	chr5	64767321	64767353	64767349	-	RAMPAGE_only	9	9	35	1.564356	4.969816	chr5	64767090	64767453	LINE|L2|L2b	+	chr5	64718147	64768669	SREK1IP1|NM_173829.3	-	64718147,64728106,64741056,64754314,64768504	64724573,64728179,64741200,64754362,64768669	0.542857
testis_male_adult_37_years	chr2	208119093	208119114	208119108	+	High_confidence	19	19	48	2.145403	5.136842	chr2	208119142	208119295	LTR|ERVL-MaLR|MLT1L	+	chr2	208119128	208156762	LOC100507443|NR_038437.1	+	208119128,208137055,208156546	208119225,208137179,208156762	0.583333
testis_male_adult_37_years	chr7	100349584	100349585	100349584	+	RAMPAGE_only	6	6	6	0.268175	2.584963	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100338176	100350158	STAG3L5P|ENST00000493499.1	+	100338176,100338772,100345864,100349716	100338264,100338889,100345968,100350158	0.500000
testis_male_adult_37_years	chr14	89957909	89957914	89957909	-	RAMPAGE_only	11	11	23	1.028006	4.297079	chr14	89957831	89958835	LTR|ERV1|LTR28C	-	chr14	89794983	89954777	EFCAB11|NM_145231.3	-	89794983,89931540,89932525,89950096,89953905,89954585	89797324,89931631,89932627,89950142,89954001,89954777	0.565217
testis_male_adult_37_years	chr19	56540162	56540178	56540177	+	RAMPAGE_only	7	7	14	0.625742	3.334679	chr19	56540041	56540354	LINE|L2|L2c	-	chr19	56539129	56548977	ZFP28|ENST00000589836.1	+	56539129,56539624,56547507,56547806,56548377,56548957	56539226,56539716,56547634,56547902,56548478,56548977	0.928571
testis_male_adult_37_years	chr1	227142956	227142957	227142956	-	RAMPAGE_only	18	20	22	0.983310	3.984184	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.545455
testis_male_adult_37_years	chr7	76478993	76479040	76479024	+	RAMPAGE_only	8	8	28	1.251485	4.280395	chr7	76478971	76479057	LINE|L2|L2b	-	chr7	76480509	76505995	DTX2|NM_001102596.1	+	76480509,76482507,76492152,76500440,76502297,76503425,76504355,76505373	76480777,76483147,76492253,76500520,76502456,76503587,76504445,76505995	1.000000
testis_male_adult_37_years	chr1	87371663	87371672	87371671	-	High_confidence	5	5	15	0.670438	3.324863	chr1	87371408	87371643	LINE|L2|L2b	-	chr1	87353523	87371655	LINC01364|NR_038324.1	-	87353523,87354843,87357575,87371568	87353867,87355198,87357678,87371655	0.933333
testis_male_adult_37_years	chr21	24192923	24192935	24192923	-	RAMPAGE_only	4	4	11	0.491655	3.277613	chr21	24192789	24193403	LTR|ERV1|LTR48B	+	chr21	24155169	24188342	AP000470.1|ENST00000448063.1	-	24155169,24187270,24188299	24155729,24187360,24188342	0.727273
testis_male_adult_37_years	chr8	107336500	107336581	107336567	-	High_confidence	16	16	103	4.603677	5.234665	chr8	107336384	107336688	SINE|Alu|AluY	+	chr8	107251511	107336522	ANGPT1|ENST00000520734.5	-	107251511,107264220,107284681,107293935,107303239,107321895,107336149,107336383	107252015,107264351,107284848,107294037,107303367,107322128,107336271,107336522	0.980583
testis_male_adult_37_years	chr10	125752064	125752086	125752070	-	High_confidence	14	14	62	2.771145	5.578118	chr10	125751632	125752271	LTR|ERVL|MER77	-	chr10	125744821	125752072	EDRF1-AS1|ENST00000615461.4	-	125744821,125745538,125749374,125750439,125751984	125744851,125745698,125749646,125750481,125752072	0.564516
testis_male_adult_37_years	chr13	51200251	51200283	51200251	-	High_confidence	32	50	78	3.486280	5.753673	chr13	51200059	51200577	LTR|ERV1|LTR12	-	chr13	51188960	51200263	STRG.214609.3	-	51188960,51200046	51191914,51200263	0.538462
testis_male_adult_37_years	chr2	32477561	32477571	32477567	+	RAMPAGE_only	6	6	13	0.581047	3.546594	chr2	32477616	32477749	SINE|Alu|AluJb	+	chr2	32436074	32611581	STRG.26937.8	+	32436074,32439507,32441328,32442064,32442323,32443490,32445520,32448794,32453807,32463193,32464508,32465064,32467524,32467902,32468436,32469394,32470167,32471013,32473111,32476212,32477367,32478634,32479461,32481319,32482428,32485642,32487646,32488587,32490040,32491424,32493539,32499546,32501712,32502794,32503041,32505004,32507979,32509737,32510525,32512932,32514989,32518253,32518816,32524887,32525463,32529650,32531354,32543240,32545642,32547849,32549312,32575155,32593914,32595033,32597750,32599738,32603005,32607454,32611447	32436184,32439686,32441462,32442226,32442455,32443588,32445668,32448928,32453942,32463381,32464823,32465164,32467739,32468111,32468783,32469614,32470301,32471151,32473239,32476344,32477583,32478818,32479617,32481453,32482582,32485759,32487801,32488714,32490151,32491558,32493667,32500109,32501888,32502891,32503236,32505205,32508259,32509994,32510634,32513154,32515770,32518397,32518946,32525019,32525628,32529824,32531551,32543541,32545860,32548014,32549481,32575366,32594060,32595144,32597968,32599900,32603083,32607643,32611581	1.000000
testis_male_adult_37_years	chr9	95681244	95681245	95681244	+	High_confidence	62	62	64	2.860537	4.591237	chr9	95680147	95681529	LTR|ERV1|LTR12C	+	chr9	95681189	95683052	STRG.165028.1	+	95681189	95683052	0.906250
testis_male_adult_37_years	chr5	58446428	58446437	58446436	+	High_confidence	3	3	7	0.312871	2.807355	chr5	58445833	58446454	LTR|ERV1|LTR12	-	chr5	58446396	58448391	STRG.93678.1	+	58446396,58448346	58446729,58448391	0.571429
testis_male_adult_37_years	chr2	199956071	199956076	199956074	+	High_confidence	2	4	8	0.357567	2.521641	chr2	199955996	199956125	LINE|L1|L1MDb	+	chr2	199955820	200008540	MAIP1|ENST00000435773.2	+	199955820,199959267,199959753,200005742,200008465	199956248,199959339,199959880,200005777,200008540	0.625000
testis_male_adult_37_years	chr5	162269004	162269036	162269034	+	High_confidence	68	85	162	7.240734	4.034748	chr5	162268763	162269327	LTR|ERV1|LTR12_	+	chr5	162269053	162269329	STRG.104389.1	+	162269053	162269329	0.888889
testis_male_adult_37_years	chr12	6132569	6132630	6132569	-	High_confidence	2	2	23	1.028006	4.201841	chr12	6132431	6133983	LTR|ERV1|LTR12C	+	chr12	6121176	6132966	STRG.197500.11	-	6121176,6123141,6124420,6128508,6129003,6132422	6121338,6123196,6124598,6128601,6129124,6132966	0.652174
testis_male_adult_37_years	chr14	23300367	23300401	23300400	-	High_confidence	3	5	14	0.625742	3.238901	chr14	23300347	23300509	SINE|MIR|MIR3	-	chr14	23298298	23300940	PPP1R3E|ENST00000561178.5	-	23298298,23299400,23300106	23298917,23299541,23300940	0.642857
testis_male_adult_37_years	chr3	64024037	64024038	64024037	-	High_confidence	7	9	10	0.446959	2.725481	chr3	64023821	64024009	SINE|MIR|MIRb	-	chr3	64010548	64024010	PSMD6|NM_001271780.1	-	64010548,64010877,64013438,64018598,64018817,64019295,64022317,64023804	64010764,64010955,64013607,64018707,64019037,64019441,64022523,64024010	0.900000
testis_male_adult_37_years	chr6	46668042	46668043	46668042	+	RAMPAGE_only	10	10	14	0.625742	3.238901	chr6	46668062	46668338	SINE|Alu|AluSz6	+	chr6	46664874	46677003	SLC25A27|ENST00000604616.1	+	46664874,46668708,46670134,46671125,46676646	46664886,46668793,46670227,46671228,46677003	0.857143
testis_male_adult_37_years	chr7	134562245	134562246	134562245	-	High_confidence	5	5	7	0.312871	2.521641	chr7	134562147	134562707	LTR|ERV1|LTR12	-	chr7	134560402	134562345	STRG.138443.1	-	134560402	134562345	0.857143
testis_male_adult_37_years	chr11	83637692	83637715	83637709	+	High_confidence	7	7	26	1.162093	4.053509	chr11	83637732	83637827	LINE|L2|L2c	+	chr11	83637705	83638594	STRG.190622.1	+	83637705,83638401	83637950,83638594	0.730769
testis_male_adult_37_years	chr3	100184013	100184030	100184013	+	High_confidence	3	3	10	0.446959	2.947703	chr3	100183754	100184191	LTR|ERVL|MLT2B4	+	chr3	100184935	100185862	STRG.57932.1	+	100184935	100185862	0.500000
testis_male_adult_37_years	chr18	33316240	33316241	33316240	-	RAMPAGE_only	7	7	7	0.312871	2.807355	chr18	33316045	33317509	LTR|ERV1|LTR12C	+	chr18	32937671	33317630	STRG.260778.5	-	32937671,32974546,33092760,33211895,33215549,33223105,33224774,33226792,33245244,33266915,33267201,33293158,33317566	32938091,32974681,33092910,33212055,33215695,33223219,33224936,33226855,33245428,33267052,33267297,33293312,33317630	1.000000
testis_male_adult_37_years	chr18	8376177	8376200	8376199	+	RAMPAGE_only	5	5	14	0.625742	3.664498	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8370932	8379313	PTPRM|ENST00000583153.2	+	8370932,8371759,8376045,8376461,8378264,8379166	8371006,8371810,8376200,8376597,8378414,8379313	0.500000
testis_male_adult_37_years	chr4	141332616	141332617	141332616	-	High_confidence	603	606	704	31.465908	4.777779	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.974432
testis_male_adult_37_years	chr5	61698403	61698441	61698428	-	High_confidence	6	9	30	1.340877	4.625054	chr5	61698281	61698759	LINE|L2|L2a	+	chr5	61663149	61698432	AC026746.1|ENST00000513386.1	-	61663149,61667756,61677622,61687844,61688861,61695982,61697409,61697911	61663543,61667877,61677691,61688014,61688996,61696018,61697639,61698432	0.900000
testis_male_adult_37_years	chr3	9363278	9363306	9363305	+	High_confidence	2	2	7	0.312871	2.584963	chr3	9363317	9363437	SINE|MIR|MIR3	+	chr3	9363097	9384870	THUMPD3|ENST00000515662.6	+	9363097,9365015,9366907,9371059,9374515,9377818,9380502,9383198,9384211,9384523	9363728,9365320,9366985,9371536,9374646,9377888,9380618,9383309,9384335,9384870	0.857143
testis_male_adult_37_years	chr7	48000215	48000252	48000251	-	High_confidence	7	7	28	1.251485	3.792377	chr7	48000133	48000438	SINE|Alu|AluSx	-	chr7	47987147	48000181	SUN3|ENST00000473723.5	-	47987147,47988787,47991009,47994314,47996030,48000127	47987449,47988880,47991045,47994482,47996146,48000181	0.821429
testis_male_adult_37_years	chr7	15511132	15511172	15511152	-	RAMPAGE_only	2	3	10	0.446959	3.169925	chr7	15510943	15511443	DNA|TcMar-Tigger|MER6A	-	chr7	15200317	15562015	AGMO|NM_001004320.1	-	15200317,15365513,15366139,15385445,15387405,15390670,15390839,15394112,15418557,15431004,15544771,15560140,15561719	15201359,15365619,15366222,15385562,15387540,15390750,15390905,15394179,15418653,15431108,15544923,15560271,15562015	0.700000
testis_male_adult_37_years	chr18	56573129	56573130	56573129	+	High_confidence	57	58	62	2.771145	4.735813	chr18	56572101	56573539	LTR|ERV1|LTR12C	+	chr18	56573080	56573670	STRG.262514.1	+	56573080	56573670	0.951613
testis_male_adult_37_years	chr4	172156075	172156091	172156075	+	High_confidence	38	47	113	5.050636	5.479480	chr4	172155984	172156360	LTR|ERV1|MER48	-	chr4	172155923	172813681	STRG.86115.1	+	172155923,172229655,172311613,172348522,172809360,172813539	172156222,172229764,172311752,172348689,172809546,172813681	0.893805
testis_male_adult_37_years	chr1	64848120	64848127	64848126	-	High_confidence	5	5	12	0.536351	3.277613	chr1	64848086	64848254	SINE|MIR|MIR	+	chr1	64841473	64848107	JAK1|ENST00000465376.5	-	64841473,64844063,64844753,64845512,64846648,64847531,64848069	64841601,64844215,64844889,64845640,64846736,64847675,64848107	0.750000
testis_male_adult_37_years	chr8	84063711	84063719	84063718	+	High_confidence	5	5	10	0.446959	2.947703	chr8	84063104	84064180	LINE|L1|L1MA2	-	chr8	84063368	84064471	STRG.149860.1	+	84063368	84064471	0.800000
testis_male_adult_37_years	chr13	41152667	41152680	41152667	+	RAMPAGE_only	4	4	12	0.536351	3.251629	chr13	41152655	41152909	LTR|ERV1|PrimLTR79	-	chr13	41132951	41175659	AL354696.2|ENST00000620300.4	+	41132951,41146426,41162262,41175372	41133055,41146507,41162403,41175659	0.500000
testis_male_adult_37_years	chr19	40169694	40169695	40169694	-	High_confidence	939	949	973	43.489103	5.389684	chr19	40169279	40170706	LTR|ERV1|LTR12C	-	chr19	40168662	40169712	STRG.269408.1	-	40168662	40169712	0.960946
testis_male_adult_37_years	chr1	243101534	243101535	243101534	-	High_confidence	9	10	11	0.491655	2.845351	chr1	243101357	243101554	SINE|Alu|FRAM	-	chr1	243056306	243101744	LINC01347|ENST00000627498.2	-	243056306,243057363,243059477,243060418,243066072,243067090,243067624,243069580,243078987,243081889,243087709,243089320,243091530,243092040,243092478,243095990,243097189,243101385	243057270,243057421,243059668,243060537,243066241,243067287,243067722,243069704,243079052,243082125,243088232,243089379,243091596,243092194,243092695,243096122,243097299,243101744	1.000000
testis_male_adult_37_years	chr17	18532979	18532995	18532994	-	High_confidence	3	3	7	0.312871	2.584963	chr17	18531706	18534404	LINE|L1|L1PA11	+	chr17	18523805	18533034	FAM106A|ENST00000609578.1	-	18523805,18528572,18532505	18523877,18528747,18533034	0.571429
testis_male_adult_37_years	chr6	30518616	30518648	30518647	+	RAMPAGE_only	29	29	61	2.726449	5.030700	chr6	30517794	30519199	LTR|ERV1|LTR12D	+	chr6	30516265	30519217	LINC02569|ENST00000415195.1	+	30516265,30518712	30516611,30519217	0.885246
testis_male_adult_37_years	chr15	51077707	51077733	51077707	-	High_confidence	23	34	102	4.558981	5.681526	chr15	51077571	51078015	LTR|ERV1|MER61B	+	chr15	51071252	51077870	STRG.235540.3	-	51071252	51077870	0.519608
testis_male_adult_37_years	chr4	117361300	117361310	117361300	+	High_confidence	3	3	12	0.536351	3.022055	chr4	117361130	117361374	LTR|ERV1|MER50	+	chr4	117361348	117372735	LINC02263|ENST00000448804.5	+	117361348,117371591,117372363	117361506,117371662,117372735	0.833333
testis_male_adult_37_years	chr6	20321088	20321122	20321121	+	High_confidence	55	57	96	4.290806	4.991549	chr6	20320048	20321457	LTR|ERV1|LTR12C	+	chr6	20321114	20335892	STRG.109511.1	+	20321114,20331705	20321575,20335892	0.968750
testis_male_adult_37_years	chr13	27445105	27445120	27445107	-	RAMPAGE_only	10	15	27	1.206789	4.163856	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.851852
testis_male_adult_37_years	chr11	126297097	126297119	126297118	-	High_confidence	48	60	102	4.558981	3.994060	chr11	126297017	126297764	LINE|L1|L1ME3E	-	chr11	126294306	126297126	AP001318.2|ENST00000528876.1	-	126294306,126296967	126294656,126297126	0.931373
testis_male_adult_37_years	chr6	36914686	36914687	36914686	+	RAMPAGE_only	8	8	8	0.357567	2.750000	chr6	36914707	36914996	SINE|Alu|AluSz6	+	chr6	36885863	36928964	C6orf89|NM_152734.3	+	36885863,36899425,36902220,36914283,36914553,36916444,36919577,36923346	36886028,36899633,36902434,36914435,36914693,36916574,36919701,36928964	1.000000
testis_male_adult_37_years	chr2	219254720	219254732	219254720	-	High_confidence	4	4	9	0.402263	3.000000	chr2	219254658	219254827	SINE|MIR|MIRb	+	chr2	219249710	219254608	TUBA4A|NM_001278552.1	-	219249710,219251564,219252007,219254094	219251323,219251713,219252230,219254608	0.888889
testis_male_adult_37_years	chr13	74419176	74419179	74419176	+	High_confidence	4	4	8	0.357567	3.000000	chr13	74419156	74419274	LTR|Gypsy|MamGypLTR2c	+	chr13	74419157	74444735	LINC00381|ENST00000649990.1	+	74419157,74426092,74434502,74443159,74444097	74419228,74426418,74434622,74443284,74444735	0.625000
testis_male_adult_37_years	chr12	21662630	21662665	21662664	+	High_confidence	2	2	6	0.268175	2.584963	chr12	21661347	21662731	LTR|ERV1|LTR12C	+	chr12	21662312	21774005	STRG.199880.1	+	21662312,21759913,21766355	21662771,21760085,21774005	0.500000
testis_male_adult_37_years	chr1	51878010	51878060	51878023	-	High_confidence	11	13	40	1.787836	4.823864	chr1	51877640	51878001	LINE|CR1|L3	-	chr1	51789191	51878040	NRDC|NM_001242361.1	-	51789191,51789567,51790532,51790899,51791577,51792045,51792376,51794471,51794822,51798248,51800555,51803813,51805509,51806793,51809314,51810280,51811993,51814034,51814550,51814692,51816311,51818065,51819799,51821497,51823663,51825286,51827795,51834016,51836130,51836368,51837486,51840225,51877982	51789433,51789657,51790649,51790990,51791661,51792098,51792424,51794610,51794854,51798411,51800683,51803964,51805561,51806913,51809401,51810404,51812098,51814089,51814609,51814813,51816389,51818135,51819873,51821555,51823786,51825382,51827869,51834170,51836212,51836438,51837620,51840514,51878040	0.975000
testis_male_adult_37_years	chr4	76886899	76886943	76886899	-	High_confidence	46	46	171	7.642997	6.554410	chr4	76886764	76887064	LTR|ERVL-MaLR|MLT1K	-	chr4	76884585	76886968	STRG.76270.1	-	76884585,76886770	76885928,76886968	0.508772
testis_male_adult_37_years	chr9	96830386	96830406	96830386	-	RAMPAGE_only	6	6	11	0.491655	3.321928	chr9	96829838	96831152	LINE|L1|L1MDa	+	chr9	96816990	96853072	ZNF782|ENST00000535338.5	-	96816990,96827079,96844889,96851946,96852852	96819778,96827181,96845016,96852005,96853072	0.818182
testis_male_adult_37_years	chr5	94979069	94979073	94979069	-	High_confidence	3	3	7	0.312871	2.807355	chr5	94978964	94979491	LTR|ERVL-MaLR|MLT1J1-int	+	chr5	94942349	94979066	MCTP1|ENST00000512568.5	-	94942349,94953218,94976744,94978983	94942427,94953361,94976809,94979066	0.571429
testis_male_adult_37_years	chr4	48781019	48781043	48781028	-	High_confidence	4	5	14	0.625742	3.378783	chr4	48780960	48781017	LINE|CR1|CR1_Mam	-	chr4	48497362	48780299	FRYL|NM_015030.1	-	48497362,48500029,48501622,48502827,48505546,48510058,48510834,48512480,48515027,48521047,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066,48547583,48548689,48549472,48550591,48551493,48553214,48556977,48557452,48561467,48562888,48563947,48564932,48565530,48567247,48570826,48573185,48575116,48576029,48578972,48580864,48581419,48582496,48586620,48589744,48590658,48593929,48595589,48595896,48602019,48603289,48605740,48606437,48608986,48609743,48619273,48620638,48623125,48634290,48684672,48710518,48780077	48499680,48500220,48501733,48502845,48505615,48510157,48510984,48512688,48515275,48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546271,48547769,48548793,48549623,48550704,48551578,48553383,48557118,48557712,48561636,48562988,48564102,48565043,48565691,48567420,48570918,48573243,48575241,48576222,48579241,48580951,48581605,48582734,48586728,48589877,48590830,48594016,48595698,48596000,48602121,48603388,48605833,48606606,48609067,48609823,48619370,48620778,48623179,48634490,48684795,48710698,48780299	0.642857
testis_male_adult_37_years	chr1	240763347	240763349	240763348	+	High_confidence	8	11	16	0.715134	3.625000	chr1	240762307	240763695	LTR|ERV1|LTR12C	+	chr1	240763381	240776044	STRG.21641.2	+	240763381,240765437,240768151,240770765,240771082,240775804	240764083,240765599,240768304,240770902,240771183,240776044	1.000000
testis_male_adult_37_years	chr2	186422410	186422449	186422448	-	RAMPAGE_only	6	6	19	0.849222	4.058814	chr2	186422293	186422427	LTR|ERVL-MaLR|MLT1J2	-	chr2	186033530	186486623	STRG.41604.10	-	186033530,186038330,186039499,186081329,186083153,186086300,186178598,186215018,186305161,186456714,186485799	186033802,186038432,186039555,186081416,186083224,186086370,186178691,186215090,186305219,186456851,186486623	0.578947
testis_male_adult_37_years	chr8	143039246	143039267	143039246	+	High_confidence	10	10	37	1.653748	4.169008	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.945946
testis_male_adult_37_years	chr12	71667845	71667867	71667855	+	High_confidence	3	3	10	0.446959	3.169925	chr12	71667688	71668064	DNA|hAT-Blackjack|MER63B	-	chr12	71667782	71676941	THAP2|ENST00000551238.1	+	71667782,71674202,71676688	71667910,71674398,71676941	0.800000
testis_male_adult_37_years	chr12	3871578	3871592	3871591	+	High_confidence	10	10	17	0.759830	3.616875	chr12	3871291	3871613	DNA|TcMar-Tigger|Tigger3a	+	chr12	3871583	3873036	AC005842.1|ENST00000649371.1	+	3871583,3872381	3871956,3873036	0.647059
testis_male_adult_37_years	chr22	37211390	37211395	37211390	-	High_confidence	3	3	7	0.312871	2.584963	chr22	37211345	37211529	SINE|MIR|MIRb	+	chr22	37206479	37210965	SSTR3|ENST00000617123.1	-	37206479,37210544	37207839,37210965	0.571429
testis_male_adult_37_years	chrX	135893593	135893596	135893595	-	High_confidence	5	7	10	0.446959	3.169925	chrX	135893277	135893550	LTR|ERVL|LTR41	-	chrX	135880751	135893428	CT45A10|NM_001291529.1	-	135880751,135882535,135883007,135885175,135893344	135881315,135882629,135883256,135885350,135893428	0.700000
testis_male_adult_37_years	chr21	35691203	35691233	35691203	-	RAMPAGE_only	9	9	30	1.340877	3.529696	chr21	35691113	35691413	SINE|Alu|AluSz6	+	chr21	35359455	35888925	STRG.281424.8	-	35359455,35461960,35580659,35864284,35886209	35372793,35462025,35580929,35864467,35888925	0.633333
testis_male_adult_37_years	chr19	9140379	9140428	9140393	+	High_confidence	34	34	142	6.346817	6.125447	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	STRG.265877.3	+	9140396,9155924,9156611,9157979,9158825,9160113	9140592,9156041,9157394,9158075,9158908,9163408	0.830986
testis_male_adult_37_years	chr1	14419972	14419973	14419972	-	High_confidence	295	297	337	15.062515	4.936078	chr1	14419527	14421085	LTR|ERV1|LTR12C	-	chr1	14348954	14419966	STRG.1457.1	-	14348954,14350868,14388243,14390685,14419493	14349378,14351025,14388341,14391578,14419966	0.943620
testis_male_adult_37_years	chr14	73713051	73713172	73713171	-	RAMPAGE_only	13	18	67	2.994625	4.544372	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	0.970149
testis_male_adult_37_years	chr7	99797192	99797193	99797192	-	RAMPAGE_only	7	7	11	0.491655	3.321928	chr7	99796313	99797193	LINE|L1|L1P3	-	chr7	99757675	99784265	CYP3A4|ENST00000336411.6	-	99757675,99760818,99762040,99763854,99766376,99767130,99768353,99769767,99770121,99772589,99778027,99779991,99784010	99758228,99760981,99762267,99764015,99766443,99767258,99768502,99769856,99770235,99772689,99778080,99780085,99784265	0.636364
testis_male_adult_37_years	chr6	155149149	155149165	155149149	+	High_confidence	12	18	57	2.547666	5.014834	chr6	155148977	155149191	LTR|ERVL|LTR16	-	chr6	155149120	155257190	TIAM2|ENST00000528391.6	+	155149120,155164414,155165262,155168844,155176815,155179038,155179377,155182225,155183236,155211203,155240529,155244010,155244657,155245622,155247999,155249850,155250912,155251944,155252947,155253972,155254418,155256459	155149226,155164600,155165409,155168916,155176977,155179143,155179456,155182318,155183500,155211307,155240709,155244079,155244783,155245731,155248179,155249969,155251021,155252003,155253053,155254060,155254573,155257190	0.912281
testis_male_adult_37_years	chr17	16852773	16852777	16852773	-	High_confidence	7	7	12	0.536351	3.418296	chr17	16852386	16852786	LINE|L1|L1PB4	+	chr17	16847634	16852776	KRT17P4|ENST00000579946.5	-	16847634,16848096,16848999,16849184,16849669,16851724,16852560	16847938,16848245,16849077,16849421,16850553,16852411,16852776	0.666667
testis_male_adult_37_years	chr4	126255662	126255663	126255662	-	High_confidence	82	83	107	4.782460	5.113654	chr4	126255106	126256048	LTR|ERV1|LTR12D	-	chr4	126226125	126255651	STRG.81520.1	-	126226125,126228624,126238150,126255018	126226955,126228747,126238228,126255651	0.953271
testis_male_adult_37_years	chr16	73812556	73812575	73812556	+	High_confidence	2	2	11	0.491655	3.321928	chr16	73812520	73812639	DNA|hAT-Charlie|MER102c	+	chr16	73812620	73816053	AC087565.1|ENST00000565061.2	+	73812620,73813764,73815587,73815876	73812640,73813857,73815688,73816053	0.545455
testis_male_adult_37_years	chrX	32175444	32175445	32175444	+	High_confidence	12	12	13	0.581047	3.084963	chrX	32175166	32175637	LTR|ERV1|LTR12F	+	chrX	32175586	32175897	STRG.290584.1	+	32175586	32175897	0.692308
testis_male_adult_37_years	chr2	203785934	203785965	203785944	+	High_confidence	9	11	65	2.905233	5.388759	chr2	203784643	203786140	LTR|ERV1|LTR12C	-	chr2	203785488	203787578	STRG.43645.1	+	203785488	203787578	0.600000
testis_male_adult_37_years	chr5	34384337	34384362	34384337	+	High_confidence	3	3	11	0.491655	2.521928	chr5	34384207	34384660	LTR|ERVL|MER70A	+	chr5	34384362	34384817	STRG.92323.1	+	34384362	34384817	0.727273
testis_male_adult_37_years	chr15	69462758	69462765	69462758	-	High_confidence	3	3	7	0.312871	2.584963	chr15	69462457	69462732	SINE|Alu|AluSp	-	chr15	69459562	69462567	STRG.237328.1	-	69459562	69462567	0.857143
testis_male_adult_37_years	chr1	167357448	167357460	167357448	+	High_confidence	5	5	14	0.625742	3.521641	chr1	167357390	167357678	SINE|Alu|AluJb	-	chr1	167357459	167387255	POU2F1|ENST00000470928.3	+	167357459,167365466,167370160,167371916,167374107,167376028,167376552,167383856,167387180	167357521,167365567,167370214,167372036,167374296,167376155,167376587,167383951,167387255	0.928571
testis_male_adult_37_years	chr12	23585828	23585861	23585848	-	High_confidence	4	4	21	0.938614	3.821928	chr12	23585622	23586212	LTR|ERV1|LTR9D	+	chr12	23534033	23585804	STRG.200126.4	-	23534033,23536452,23543210,23546315,23563257,23575660,23585242	23534522,23536669,23543384,23546424,23563403,23575838,23585804	0.952381
testis_male_adult_37_years	chr4	118835953	118835954	118835953	-	High_confidence	11	11	11	0.491655	3.027169	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	1.000000
testis_male_adult_37_years	chr2	191682530	191682550	191682530	+	High_confidence	3	3	6	0.268175	2.584963	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191683504	191686157	STRG.42402.11	+	191683504,191684229	191683804,191686157	0.666667
testis_male_adult_37_years	chr2	44327028	44327029	44327028	-	RAMPAGE_only	4	6	6	0.268175	2.584963	chr2	44326986	44327071	DNA|hAT-Charlie|MER58C	+	chr2	44321463	44328260	STRG.28002.15	-	44321463,44323261,44326711	44322854,44323411,44328260	1.000000
testis_male_adult_37_years	chr1	89272854	89272891	89272890	-	High_confidence	95	101	542	24.225173	6.291837	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89268271	89272891	STRG.9391.4	-	89268271,89269365,89270754,89272451	89268856,89269574,89270862,89272891	0.970480
testis_male_adult_37_years	chr18	33316448	33316469	33316448	-	RAMPAGE_only	2	2	11	0.491655	3.321928	chr18	33316045	33317509	LTR|ERV1|LTR12C	+	chr18	32937671	33317630	STRG.260778.5	-	32937671,32974546,33092760,33211895,33215549,33223105,33224774,33226792,33245244,33266915,33267201,33293158,33317566	32938091,32974681,33092910,33212055,33215695,33223219,33224936,33226855,33245428,33267052,33267297,33293312,33317630	0.545455
testis_male_adult_37_years	chr2	179770622	179770645	179770644	-	High_confidence	5	6	9	0.402263	2.750000	chr2	179770512	179770864	DNA|TcMar-Tigger|Tigger16a	-	chr2	179443249	179769755	ZNF385B|ENST00000644742.1	-	179443249,179444875,179445549,179446524,179483271,179518527,179544826,179769502	179443468,179444977,179445728,179446770,179483434,179518638,179544969,179769755	0.777778
testis_male_adult_37_years	chr4	170979227	170979278	170979277	+	High_confidence	6	6	29	1.296181	4.021268	chr4	170979316	170979630	SINE|Alu|AluY	+	chr4	170979879	170994648	STRG.85883.2	+	170979879,170993736	170980043,170994648	1.000000
testis_male_adult_37_years	chr2	135097647	135097673	135097647	+	RAMPAGE_only	2	2	6	0.268175	2.584963	chr2	135097520	135098516	LINE|L1|L1ME1	-	chr2	135089854	135175590	RAB3GAP1|ENST00000539493.2	+	135089854,135090997,135093614,135113150,135115215,135120818,135124164,135126180,135126582,135129994,135130551,135132894,135133860,135135264,135135563,135150368,135153648,135162554,135162747,135162985,135164593,135168544,135169733,135175326	135089872,135091130,135093693,135113270,135115381,135120918,135124246,135126249,135126656,135130087,135130721,135132984,135134033,135135319,135135932,135150506,135153876,135162651,135162851,135163101,135164696,135168749,135169848,135175590	1.000000
testis_male_adult_37_years	chr7	53217084	53217088	53217087	+	High_confidence	47	47	82	3.665063	5.332011	chr7	53216853	53217463	LTR|ERV1|LTR12_	+	chr7	53217283	53218126	STRG.130887.1	+	53217283	53218126	0.609756
testis_male_adult_37_years	chr14	100829513	100829595	100829513	+	High_confidence	7	7	40	1.787836	4.325071	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	1.000000
testis_male_adult_37_years	chr4	28114159	28114181	28114159	-	RAMPAGE_only	4	5	11	0.491655	3.321928	chr4	28114035	28114374	LINE|L1|L1MB3	+	chr4	28031622	28032463	STRG.73022.1	-	28031622	28032463	0.636364
testis_male_adult_37_years	chr12	67729436	67729456	67729440	-	High_confidence	3	3	13	0.581047	3.084963	chr12	67729316	67729555	LTR|ERVL-MaLR|MSTC	-	chr12	67709046	67729475	LINC02421|ENST00000542219.1	-	67709046,67715321,67718342,67722378,67729395	67710685,67716203,67718541,67722713,67729475	0.846154
testis_male_adult_37_years	chr15	78847663	78847664	78847663	+	High_confidence	144	144	147	6.570296	5.336587	chr15	78846690	78848069	LTR|ERV1|LTR12C	+	chr15	78847666	78886161	MORF4L1|ENST00000559697.5	+	78847666,78878212,78880511,78886140	78848081,78878259,78880579,78886161	0.816327
testis_male_adult_37_years	chr2	54137844	54137853	54137844	+	RAMPAGE_only	5	5	11	0.491655	3.277613	chr2	54137289	54138174	LINE|L1|L1PREC2	-	chr2	54123178	54305019	ACYP2|ENST00000606865.1	+	54123178,54138638,54304687	54123410,54138748,54305019	0.636364
testis_male_adult_37_years	chr1	212305556	212305557	212305556	+	RAMPAGE_only	6	6	7	0.312871	2.584963	chr1	212305327	212305808	LINE|L1|L1MB8	-	chr1	212301862	212319545	PPP2R5A|ENST00000498123.5	+	212301862,212319376	212302092,212319545	0.571429
testis_male_adult_37_years	chr3	128626785	128626817	128626815	-	RAMPAGE_only	2	3	10	0.446959	3.169925	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.900000
testis_male_adult_37_years	chr22	23621398	23621431	23621398	-	RAMPAGE_only	3	3	10	0.446959	2.921928	chr22	23621081	23621631	LTR|ERV1|LTR71B	+	chr22	23608451	23632321	DRICH1|ENST00000317749.9	-	23608451,23613288,23613638,23614134,23616852,23617574,23619363,23620593,23622090,23624882,23625980,23631815	23608768,23613330,23613660,23614214,23616874,23617657,23619393,23620615,23622176,23624904,23626048,23632321	0.500000
testis_male_adult_37_years	chr3	180868130	180868182	180868181	+	High_confidence	25	25	92	4.112022	5.720919	chr3	180868024	180868652	LTR|ERV1|LTR1C1	-	chr3	180868155	180948783	FXR1|ENST00000484790.5	+	180868155,180933333,180935137,180947864,180948346,180948720	180868295,180933386,180935231,180947936,180948495,180948783	0.630435
testis_male_adult_37_years	chrX	111665810	111665811	111665810	+	RAMPAGE_only	31	32	44	1.966619	4.582901	chrX	111665612	111666014	LTR|ERVL|MLT2A1	+	chrX	111681117	111688800	ALG13|NM_001324290.1	+	111681117,111682131,111684964,111687886	111681299,111682300,111685103,111688800	0.568182
testis_male_adult_37_years	chr18	36122242	36122269	36122248	-	High_confidence	6	6	21	0.938614	3.975418	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	1.000000
testis_male_adult_37_years	chr2	209611312	209611334	209611333	+	RAMPAGE_only	4	5	15	0.670438	3.664498	chr2	209611230	209611346	DNA|hAT-Charlie|MER5A	+	chr2	209580040	209734118	MAP2|ENST00000392194.5	+	209580040,209625052,209653141,209678571,209680749,209700276,209705579,209709913,209725708,209729849,209730181	209580100,209625129,209653432,209678685,209680827,209700338,209705727,209710254,209725790,209729962,209734118	0.933333
testis_male_adult_37_years	chr8	42542159	42542175	42542159	+	High_confidence	3	3	8	0.357567	2.750000	chr8	42542201	42542309	SINE|MIR|MIRb	+	chr8	42541795	42552997	SMIM19|NM_001135675.1	+	42541795,42546468,42548655,42552543	42542155,42546606,42548780,42552997	0.500000
testis_male_adult_37_years	chr6	110189876	110189887	110189876	-	High_confidence	9	9	45	2.011315	5.260457	chr6	110189478	110190008	LINE|L2|L2	+	chr6	110189616	110190005	STRG.118641.1	-	110189616	110190005	0.733333
testis_male_adult_37_years	chr22	36482035	36482064	36482035	-	High_confidence	3	3	11	0.491655	3.121928	chr22	36481702	36481993	SINE|Alu|AluSc	-	chr22	36467035	36482030	TXN2|ENST00000216185.6	-	36467035,36476732,36480574,36481563	36467917,36476856,36480837,36482030	0.909091
testis_male_adult_37_years	chr7	7477792	7477793	7477792	-	High_confidence	203	203	241	10.771710	6.136669	chr7	7477477	7479105	LTR|ERV1|LTR12C	-	chr7	7356162	7477775	STRG.125407.1	-	7356162,7358628,7360389,7370724,7372997,7375460,7380659,7380781,7381543,7417858,7419884,7432472,7432631,7436394,7437393,7440789,7443584,7444417,7452318,7453439,7456043,7474600,7477111,7477513	7357020,7358805,7360528,7370882,7373546,7375497,7380695,7380862,7381612,7417927,7419953,7432541,7432700,7436463,7437462,7440861,7443653,7444489,7452387,7453508,7456112,7474669,7477180,7477775	0.863071
testis_male_adult_37_years	chr14	106845850	106845883	106845882	-	High_confidence	10	10	46	2.056011	4.795089	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106809197	106846280	STRG.231952.2	-	106809197,106845802	106810746,106846280	0.521739
testis_male_adult_37_years	chr3	110969966	110970004	110969966	-	High_confidence	2	2	12	0.536351	3.459432	chr3	110969731	110970304	LTR|ERV1|LTR10C	-	chr3	110965059	110970025	STRG.59063.7	-	110965059	110970025	0.750000
testis_male_adult_37_years	chr12	9407368	9407387	9407374	-	High_confidence	2	3	12	0.536351	2.913977	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9397061	9406516	STRG.198588.2	-	9397061,9397614,9398381,9399794,9401746,9402426,9406307	9397214,9397689,9398484,9400326,9401859,9402556,9406516	0.916667
testis_male_adult_37_years	chr20	38317631	38317673	38317631	+	High_confidence	8	10	53	2.368882	4.964581	chr20	38317239	38317739	LTR|ERVL-MaLR|MLT1G	-	chr20	38317648	38337325	BPI|ENST00000417318.3	+	38317648,38318412,38320182,38323869,38324773,38326264,38327587,38331047,38334429,38335597,38337145	38317737,38318476,38320274,38324046,38324833,38326432,38327655,38331090,38334493,38335674,38337325	0.886792
testis_male_adult_37_years	chr3	132627106	132627127	132627106	-	High_confidence	35	37	136	6.078641	5.333069	chr3	132627080	132627408	LTR|ERV1|MER61C	+	chr3	132579178	132627074	ACAD11|ENST00000487024.1	-	132579178,132603228,132605097,132618633,132619467,132626690	132579558,132603327,132605205,132618772,132619545,132627074	0.941176
testis_male_adult_37_years	chr12	7882056	7882057	7882056	+	High_confidence	82	82	85	3.799151	4.852478	chr12	7881097	7882474	LTR|ERV1|LTR12C	+	chr12	7882070	7883555	STRG.197838.1	+	7882070	7883555	0.952941
testis_male_adult_37_years	chr2	134983481	134983499	134983481	-	High_confidence	2	3	10	0.446959	3.169925	chr2	134983297	134983564	LTR|ERVL-MaLR|MLT1K	+	chr2	134980713	134983479	MAP3K19|ENST00000478805.1	-	134980713,134983179	134981518,134983479	0.700000
testis_male_adult_37_years	chr4	86117911	86117939	86117911	+	High_confidence	6	6	16	0.715134	3.773557	chr4	86117503	86118131	LTR|ERVL|LTR67B	+	chr4	86117911	86127688	AC104827.1|ENST00000509322.5	+	86117911,86119983,86127591	86117962,86120601,86127688	0.937500
testis_male_adult_37_years	chr1	183972756	183972798	183972777	-	RAMPAGE_only	7	7	32	1.430269	3.718139	chr1	183972695	183972997	SINE|Alu|AluY	-	chr1	183937964	183964500	COLGALT2|ENST00000367520.3	-	183937964,183940580,183944195,183945431,183951006,183954761,183963900	183939037,183940787,183944323,183945564,183951113,183954838,183964500	0.562500
testis_male_adult_37_years	chr8	100618501	100618537	100618536	+	High_confidence	64	65	116	5.184723	4.468406	chr8	100618426	100619138	LTR|ERVL|MER21B	-	chr8	100618580	100619993	AP001205.1|ENST00000521625.5	+	100618580,100619074,100619812	100618764,100619158,100619993	0.974138
testis_male_adult_37_years	chr5	160198352	160198383	160198382	-	High_confidence	3	3	11	0.491655	3.459432	chr5	160198298	160198985	LINE|L2|L2a	+	chr5	160195743	160199095	AC008609.1|ENST00000524005.1	-	160195743,160198838	160195947,160199095	0.818182
testis_male_adult_37_years	chr3	169812866	169812873	169812869	+	RAMPAGE_only	3	3	8	0.357567	3.000000	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169821921	169837773	LRRIQ4|NM_001080460.1	+	169821921,169828758,169830491,169832986,169837478	169822941,169828932,169830630,169833183,169837773	0.875000
testis_male_adult_37_years	chr14	44912470	44912498	44912481	-	High_confidence	2	2	11	0.491655	2.921928	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.545455
testis_male_adult_37_years	chr9	39809856	39809879	39809864	-	High_confidence	4	4	21	0.938614	3.892407	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803190	39810013	STRG.160954.2	-	39803190,39809485,39809730	39803859,39809615,39810013	0.666667
testis_male_adult_37_years	chr1	154975518	154975546	154975518	+	High_confidence	3	3	9	0.402263	2.750000	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.777778
testis_male_adult_37_years	chr2	1041909	1041941	1041940	-	High_confidence	6	6	28	1.251485	4.494680	chr2	1041838	1041981	LINE|L1|L1M5	-	chr2	1040320	1041939	STRG.22985.1	-	1040320	1041939	0.821429
testis_male_adult_37_years	chr4	28402888	28402951	28402950	-	High_confidence	14	14	60	2.681753	4.654633	chr4	28402359	28403146	LTR|ERV1|LTR1A2	-	chr4	28381496	28402864	AC109588.1|ENST00000515720.1	-	28381496,28393203,28394195,28402651	28381911,28393350,28394300,28402864	0.733333
testis_male_adult_37_years	chr5	127702193	127702222	127702193	+	High_confidence	11	11	49	2.190099	5.246282	chr5	127702088	127702262	SINE|Alu|AluYh3	-	chr5	127702131	127941634	STRG.100749.1	+	127702131,127702637,127707708,127754267,127797102,127798105,127875537,127941181	127702300,127703507,127707760,127754375,127797234,127798162,127875661,127941634	0.693878
testis_male_adult_37_years	chr7	137268353	137268495	137268452	-	High_confidence	1441	1488	5306	237.156401	6.687882	chr7	137268351	137268846	LTR|ERV1|LTR2B	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.984923
testis_male_adult_37_years	chr12	95551564	95551609	95551608	+	RAMPAGE_only	16	16	55	2.458274	5.194625	chr12	95551437	95551690	LINE|L2|L2b	+	chr12	95634474	95634765	STRG.207829.1	+	95634474	95634765	0.527273
testis_male_adult_37_years	chr4	83486791	83486828	83486826	+	RAMPAGE_only	10	20	61	2.726449	4.269459	chr4	83486716	83487011	LTR|ERV1|MER39	-	chr4	83535913	83605875	GPAT3|NM_001256422.1	+	83535913,83536503,83544535,83581561,83587254,83588209,83590198,83594844,83596857,83597429,83598050,83598643,83604667	83536017,83536763,83544602,83581832,83587329,83588299,83590292,83594960,83596913,83597515,83598179,83598723,83605875	0.868852
testis_male_adult_37_years	chrX	93677894	93677914	93677913	+	RAMPAGE_only	4	4	8	0.357567	2.521641	chrX	93677499	93678375	LINE|L1|L1ME1	-	chrX	93674205	93712265	FAM133A|ENST00000332647.5	+	93674205,93674700,93698396,93709316	93674274,93674752,93698485,93712265	0.500000
testis_male_adult_37_years	chr11	5938102	5938139	5938103	-	RAMPAGE_only	17	23	80	3.575671	5.024857	chr11	5937929	5938354	LTR|ERV1|HERV-Fc1_LTR2	+	chr11	5878462	5883526	STRG.183053.1	-	5878462	5883526	0.662500
testis_male_adult_37_years	chr17	68045482	68045504	68045503	+	High_confidence	4	5	14	0.625742	3.521641	chr17	68045393	68045538	DNA|hAT-Charlie|MER5B	-	chr17	68045467	68046629	KPNA2|ENST00000582898.1	+	68045467,68045771,68046503	68045585,68045921,68046629	0.928571
testis_male_adult_37_years	chr20	15699855	15699856	15699855	+	High_confidence	176	176	241	10.771710	6.691983	chr20	15699592	15700275	LINE|L1|L1PB1	-	chr20	15699614	15987225	STRG.273924.2	+	15699614,15862744,15885763,15933275,15937475,15967552,15986726,15987065	15699991,15862826,15885811,15933338,15937544,15967630,15986801,15987225	0.746888
testis_male_adult_37_years	chr20	53608832	53608833	53608832	-	High_confidence	15	15	18	0.804526	3.969816	chr20	53608733	53608922	SINE|MIR|MIR	+	chr20	53582541	53608892	ZNF217|ENST00000431687.5	-	53582541,53608353,53608831	53583168,53608444,53608892	0.555556
testis_male_adult_37_years	chr13	106570473	106570474	106570473	-	RAMPAGE_only	4	4	7	0.312871	2.807355	chr13	106570400	106570487	LTR|ERVL-MaLR|MLT1A0	-	chr13	106543313	106568166	ARGLU1|NM_018011.3	-	106543313,106557047,106559431,106567572	106544160,106557131,106559657,106568166	0.571429
testis_male_adult_37_years	chrX	131299651	131299652	131299651	-	High_confidence	9	9	9	0.402263	2.947703	chrX	131299494	131299805	SINE|Alu|AluJb	+	chrX	131275978	131299653	STRG.296518.3	-	131275978,131276938,131277855,131278460,131279142,131279270,131281217,131281665,131282443,131282979,131285178,131285766,131286436,131286604,131289213,131299650	131276248,131277226,131278134,131278751,131279175,131279341,131281338,131281944,131282737,131283264,131285466,131286048,131286463,131286741,131289275,131299653	0.888889
testis_male_adult_37_years	chr11	47172282	47172302	47172292	-	High_confidence	2	2	9	0.402263	2.750000	chr11	47172030	47172274	SINE|MIR|MIRb	-	chr11	47166267	47171557	ARFGAP2|ENST00000527776.5	-	47166267,47166505,47166759,47167908,47168122,47171452	47166386,47166599,47166886,47168043,47168251,47171557	0.777778
testis_male_adult_37_years	chr10	30369326	30369333	30369332	-	RAMPAGE_only	2	2	7	0.312871	2.584963	chr10	30369249	30369301	SINE|MIR|MIRc	-	chr10	30364326	30371907	GOLGA2P6|NR_120609.1	-	30364326,30364705,30365148,30365344,30365826,30366350,30367765,30368145,30369045,30369326,30369532,30371064	30364619,30365067,30365251,30365565,30365920,30366426,30367878,30368650,30369133,30369425,30369619,30371907	0.857143
testis_male_adult_37_years	chr4	34335350	34335351	34335350	-	High_confidence	223	224	231	10.324751	5.259365	chr4	34334935	34336205	LTR|ERV1|LTR12C	-	chr4	34332002	34335338	STRG.73586.2	-	34332002,34334928	34332044,34335338	0.948052
testis_male_adult_37_years	chr5	29880508	29880509	29880508	+	High_confidence	19	19	20	0.893918	3.826875	chr5	29880240	29880971	LINE|L1|L1MA6	-	chr5	29880559	29882103	LOC105374704|NR_134264.1	+	29880559,29881767	29880613,29882103	0.850000
testis_male_adult_37_years	chr12	58712336	58712365	58712364	-	RAMPAGE_only	3	3	7	0.312871	2.807355	chr12	58712304	58712370	LINE|L2|L2a	+	chr12	58607981	58780949	STRG.203536.8	-	58607981,58647875	58609549,58780949	1.000000
testis_male_adult_37_years	chr9	94937625	94937646	94937645	-	High_confidence	31	34	96	4.290806	5.384319	chr9	94937586	94937765	LINE|L2|L2c	+	chr9	94920956	94937640	STRG.164949.1	-	94920956,94934772,94937598	94921404,94934944,94937640	0.760417
testis_male_adult_37_years	chr14	102266476	102266483	102266476	-	RAMPAGE_only	6	6	11	0.491655	2.921928	chr14	102266307	102266549	SINE|Alu|AluJb	-	chr14	102250894	102305134	STRG.231616.12	-	102250894,102251755,102251916,102263545,102265822,102304961	102250990,102251804,102251995,102263616,102283592,102305134	0.818182
testis_male_adult_37_years	chr17	39868745	39868746	39868745	-	RAMPAGE_only	9	9	14	0.625742	3.700440	chr17	39868703	39868789	SINE|MIR|MIRb	-	chr17	39757714	39864188	IKZF3|NM_001284515.1	-	39757714,39777650,39777884,39788257,39792672,39829386,39832097,39864119	39766493,39777767,39778010,39788374,39792933,39829488,39832151,39864188	0.928571
testis_male_adult_37_years	chr7	113593622	113593638	113593622	-	RAMPAGE_only	70	77	163	7.285430	5.325416	chr7	113593157	113594562	LTR|ERV1|LTR12C	+	chr7	113485007	113487843	STRG.136331.1	-	113485007	113487843	0.920245
testis_male_adult_37_years	chr10	9878094	9878095	9878094	-	High_confidence	10	10	15	0.670438	3.506891	chr10	9877868	9878570	LTR|ERV1|MER50B	+	chr10	9458801	9878105	STRG.170582.1	-	9458801,9533058,9616971,9684478,9786171,9790673,9863641,9877747	9458961,9533199,9617081,9684526,9786265,9790788,9863861,9878105	0.866667
testis_male_adult_37_years	chr19	7011490	7011543	7011527	+	High_confidence	18	23	97	4.335501	5.624354	chr19	7011365	7011658	LTR|ERVL-MaLR|MLT1K	+	chr19	7011883	7012679	AC025278.2|ENST00000636139.1	+	7011883	7012679	0.711340
testis_male_adult_37_years	chrX	9909462	9909479	9909477	+	RAMPAGE_only	5	9	15	0.670438	3.521641	chrX	9909002	9909767	LINE|L1|L1MC3	+	chrX	9912371	9949443	SHROOM2|NM_001320664.1	+	9912371,9932174,9937133,9939194,9944643,9946670	9912587,9932870,9937685,9939366,9944913,9949443	0.866667
testis_male_adult_37_years	chr9	92536601	92536622	92536601	-	High_confidence	6	7	10	0.446959	2.947703	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.800000
testis_male_adult_37_years	chr9	111783948	111783964	111783963	-	High_confidence	297	391	1223	54.663075	6.573902	chr9	111783697	111784151	LTR|ERVL|MER70A	-	chr9	111686572	111783948	STRG.166805.2	-	111686572,111691550,111693798,111694230,111699953,111702104,111703880,111705246,111706567,111707854,111713099,111714444,111718183,111722408,111723791,111727632,111738279,111741475,111746233,111748091,111756324,111758083,111758694,111775790,111780929,111783798	111686870,111692511,111693948,111694362,111700047,111702226,111703992,111705364,111706746,111707924,111713172,111714623,111718288,111722585,111723911,111728049,111738522,111741570,111746342,111748199,111756478,111758195,111758848,111775975,111781017,111783948	0.941946
testis_male_adult_37_years	chr2	21649509	21649539	21649509	-	High_confidence	74	77	172	7.687693	5.174386	chr2	21649404	21649584	SINE|MIR|MIR3	+	chr2	21638183	21649502	AC009411.1|ENST00000416032.6	-	21638183,21647537,21649451	21638538,21647752,21649502	0.895349
testis_male_adult_37_years	chr4	74114183	74114207	74114183	+	High_confidence	12	12	23	1.028006	4.349649	chr4	74114150	74114286	LINE|L2|L2a	-	chr4	74114189	74143905	STRG.76204.1	+	74114189,74114487,74125439,74143392	74114383,74114657,74125517,74143905	0.869565
testis_male_adult_37_years	chr6	4688111	4688148	4688111	+	RAMPAGE_only	38	38	69	3.084017	5.279088	chr6	4688157	4688826	LINE|L1|L1MEh	+	chr6	4702462	4703779	PSMC1P11|ENST00000405257.1	+	4702462	4703779	0.579710
testis_male_adult_37_years	chr17	42268369	42268426	42268422	-	RAMPAGE_only	8	8	30	1.340877	4.506891	chr17	42267982	42268501	DNA|TcMar-Tigger|Tigger3b	+	chr17	42199167	42276406	STAT5B|ENST00000293328.7	-	42199167,42202339,42202756,42207557,42210170,42210402,42211983,42216013,42217159,42217376,42218150,42218722,42219311,42219711,42223381,42224778,42227528,42231999,42276247	42201864,42202447,42202808,42207728,42210301,42210497,42212190,42216106,42217282,42217464,42218330,42218878,42219463,42219842,42223556,42224868,42227685,42232137,42276406	0.766667
testis_male_adult_37_years	chr22	26512099	26512141	26512112	-	High_confidence	2	3	10	0.446959	3.121928	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	0.900000
testis_male_adult_37_years	chr8	122539951	122539952	122539951	+	High_confidence	14	14	19	0.849222	4.058814	chr8	122539756	122540288	LTR|ERVL-MaLR|MLT1F	+	chr8	122539961	122540412	STRG.154261.1	+	122539961	122540412	0.789474
testis_male_adult_37_years	chr2	177922846	177922852	177922851	-	High_confidence	4	5	14	0.625742	3.238901	chr2	177922789	177923057	LINE|L2|L2a	+	chr2	177898113	177922837	PDE11A|ENST00000427127.1	-	177898113,177899504,177905097,177921730,177922707	177898198,177899590,177905187,177921958,177922837	0.857143
testis_male_adult_37_years	chr15	99007791	99007792	99007791	-	High_confidence	22	22	29	1.296181	3.838040	chr15	99007373	99008797	LTR|ERV1|LTR12C	-	chr15	98968229	99007795	PGPEP1L|NM_001167902.1	-	98968229,98969424,98971035,99005428,99007358	98968697,98969651,98971158,99005656,99007795	0.827586
testis_male_adult_37_years	chr13	23108128	23108150	23108149	+	High_confidence	6	6	12	0.536351	3.584963	chr13	23107658	23108181	LTR|ERV1|LTR12F	+	chr13	23107911	23108802	STRG.212263.1	+	23107911	23108802	0.583333
testis_male_adult_37_years	chr13	58687814	58687856	58687855	-	RAMPAGE_only	10	10	52	2.324186	5.015371	chr13	58687807	58688325	LTR|ERV1|LTR12F	+	chr13	58659031	58659293	STRG.215641.1	-	58659031	58659293	0.788462
testis_male_adult_37_years	chr3	97444529	97444559	97444547	+	RAMPAGE_only	3	3	13	0.581047	3.418296	chr3	97444508	97444562	LINE|L2|L2c	+	chr3	97441415	97638063	EPHA6|ENST00000508345.5	+	97441415,97448567,97475351,97479293,97483933,97532357,97592611,97610792,97612377,97637872	97441472,97448730,97475460,97479364,97484059,97532543,97592737,97610854,97612475,97638063	0.923077
testis_male_adult_37_years	chr10	63430558	63430588	63430587	+	High_confidence	13	13	24	1.072701	4.334963	chr10	63430430	63430754	LINE|L1|L1MB7	+	chr10	63430574	63431202	LOC105378330|NR_134312.1	+	63430574,63430772	63430623,63431202	0.875000
testis_male_adult_37_years	chr17	18860475	18860493	18860492	+	High_confidence	4	4	11	0.491655	3.459432	chr17	18860434	18860552	LINE|L2|L2a	-	chr17	18860514	18911251	PRPSAP2|ENST00000422237.5	+	18860514,18865468,18865801,18867281,18872582,18877697,18882567,18889821,18911102	18860691,18865564,18865952,18867334,18872649,18877870,18882683,18889877,18911251	1.000000
testis_male_adult_37_years	chr7	158707815	158707838	158707837	-	RAMPAGE_only	3	3	10	0.446959	2.921928	chr7	158706809	158708087	LTR|ERV1|LTR2752	-	chr7	158631168	158704831	NCAPG2|NM_017760.6	-	158631168,158644288,158645518,158646459,158650831,158652292,158654594,158655117,158655338,158656259,158656551,158658337,158662193,158664183,158664527,158671513,158675476,158679959,158680720,158683299,158686171,158687347,158689818,158690567,158692841,158693308,158701821,158704723	158631717,158644388,158645619,158646563,158650972,158652480,158654694,158655258,158655455,158656433,158656705,158658408,158662367,158664296,158664750,158671666,158675656,158680085,158680816,158683386,158686241,158687442,158689953,158690722,158692956,158693497,158701938,158704831	0.900000
testis_male_adult_37_years	chr7	99410041	99410068	99410041	+	High_confidence	1	1	7	0.312871	2.584963	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.714286
testis_male_adult_37_years	chr10	61480022	61480047	61480046	+	High_confidence	5	5	20	0.893918	3.576618	chr10	61479979	61480188	DNA|hAT-Charlie|MER3	+	chr10	61480040	61483191	TMEM26-AS1|NR_120644.1	+	61480040,61481839,61482789,61482921	61480204,61481950,61482825,61483191	0.600000
testis_male_adult_37_years	chr5	78251553	78251569	78251553	-	RAMPAGE_only	2	2	7	0.312871	2.584963	chr5	78251258	78253343	LINE|L1|L1MA1	+	chr5	78002325	78294692	AP3B1|ENST00000519295.5	-	78002325,78015409,78020691,78034360,78039042,78089392,78100952,78110206,78113751,78116125,78128029,78129120,78141142,78156257,78162818,78165609,78175625,78175783,78177338,78181506,78216054,78225541,78227371,78228143,78240861,78267519,78294439	78003055,78015548,78020789,78034445,78039274,78089499,78101025,78110354,78113923,78116234,78128160,78129307,78141319,78156367,78162951,78165672,78175697,78175838,78177436,78181662,78216237,78225608,78227532,78228239,78240936,78267595,78294692	0.714286
testis_male_adult_37_years	chr5	119159148	119159149	119159148	+	RAMPAGE_only	5	5	7	0.312871	2.521641	chr5	119159133	119159396	SINE|Alu|AluSz	-	chr5	119071489	119249127	DMXL1|ENST00000311085.8	+	119071489,119097978,119101934,119105179,119110150,119114474,119116157,119118814,119120970,119129210,119133131,119133493,119134267,119143840,119144535,119146836,119147248,119148738,119151928,119164506,119165182,119166615,119167602,119170189,119171777,119175260,119177356,119177995,119189707,119193827,119196370,119197754,119203318,119216900,119220471,119220939,119224708,119233339,119237321,119238988,119240418,119244358,119246994	119071656,119098104,119102006,119105258,119110283,119114541,119116336,119119004,119121139,119129423,119133385,119134178,119134389,119143930,119144638,119146956,119147470,119150421,119152036,119164676,119165280,119166781,119167864,119171280,119171969,119175337,119177484,119178244,119189886,119193970,119196456,119197956,119203436,119216987,119220593,119221081,119224769,119233467,119237414,119239080,119240471,119244576,119249127	1.000000
testis_male_adult_37_years	chr13	30977619	30977630	30977619	-	High_confidence	26	27	99	4.424893	4.682877	chr13	30977577	30977723	LTR|Gypsy|MamGyp-int	-	chr13	30973288	30977623	AL353680.1|ENST00000433788.1	-	30973288,30974807,30977559	30973481,30974887,30977623	0.969697
testis_male_adult_37_years	chr1	25853793	25853805	25853804	-	RAMPAGE_only	10	12	17	0.759830	3.690117	chr1	25853623	25853933	LTR|ERVL-MaLR|MLT1F1	-	chr1	25834005	25859412	AUNIP|ENST00000374298.3	-	25834005,25837412,25859279	25835846,25837554,25859412	0.647059
testis_male_adult_37_years	chr2	70994357	70994391	70994357	-	High_confidence	3	3	16	0.715134	3.702820	chr2	70994036	70994405	LINE|L2|L2b	-	chr2	70988599	70994704	TEX261|ENST00000466731.5	-	70988599,70988914,70989748,70991829,70993695,70994640	70988715,70989017,70989816,70991983,70993775,70994704	0.625000
testis_male_adult_37_years	chr18	8608015	8608049	8608048	+	RAMPAGE_only	3	5	9	0.402263	3.169925	chr18	8607829	8608179	SINE|Alu|AluJr	+	chr18	8609436	8639381	RAB12|ENST00000649141.1	+	8609436,8624937,8633188,8635532,8636252,8638148	8609953,8624998,8633327,8635622,8636357,8639381	1.000000
testis_male_adult_37_years	chr2	177499694	177499714	177499694	+	RAMPAGE_only	3	5	15	0.670438	3.664498	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.666667
testis_male_adult_37_years	chr22	23567054	23567069	23567054	+	High_confidence	3	3	8	0.357567	2.807355	chr22	23566936	23567104	SINE|MIR|MIR1_Amn	+	chr22	23567367	23567695	STRG.283757.1	+	23567367	23567695	0.500000
testis_male_adult_37_years	chr17	36543452	36543460	36543459	-	High_confidence	3	5	9	0.402263	2.947703	chr17	36543165	36543452	SINE|Alu|AluSz	-	chr17	36533921	36543435	MYO19|ENST00000610496.1	-	36533921,36542080,36543125	36534104,36542165,36543435	0.555556
testis_male_adult_37_years	chr7	117182672	117182689	117182688	+	High_confidence	17	18	54	2.413578	4.165416	chr7	117182470	117182932	LINE|CR1|L3	+	chr7	117182680	117209937	ST7-OT3|NR_002332.2	+	117182680,117184124,117189320,117190132,117190833,117191634,117198319,117199071,117209786	117182745,117184199,117189393,117190268,117190936,117191761,117198540,117199144,117209937	0.888889
testis_male_adult_37_years	chr7	103199439	103199454	103199439	-	RAMPAGE_only	9	12	39	1.743140	4.753226	chr7	103199189	103199900	DNA|TcMar-Tigger|MER44C	+	chr7	103175342	103264664	STRG.135025.7	-	103175342,103184001,103185437,103195439,103197186,103198594,103210266,103212160,103214000,103216462,103225104,103233799,103234648,103237755,103240561,103242988,103254781,103257603,103258443	103175411,103184127,103185537,103195614,103197306,103198619,103210313,103212232,103214102,103216543,103225164,103233886,103234726,103237855,103240653,103243046,103254875,103257724,103264664	0.538462
testis_male_adult_37_years	chr5	12574745	12574765	12574764	-	High_confidence	4	5	13	0.581047	3.238901	chr5	12573943	12575033	LTR|ERV1|LTR12C	-	chr5	12529910	12574773	STRG.89887.2	-	12529910,12571815,12574503	12530613,12571904,12574773	1.000000
testis_male_adult_37_years	chr3	85505022	85505063	85505044	+	High_confidence	5	5	21	0.938614	4.106603	chr3	85504024	85505239	LTR|ERV1|LTR12C	-	chr3	85504472	85512503	STRG.57202.1	+	85504472,85511856	85505250,85512503	0.523810
testis_male_adult_37_years	chr1	224352437	224352438	224352437	+	High_confidence	6	6	8	0.357567	2.807355	chr1	224351656	224353059	LTR|ERV1|LTR12C	-	chr1	224352446	224353563	STRG.19867.1	+	224352446	224353563	0.750000
testis_male_adult_37_years	chr14	81624134	81624139	81624136	+	High_confidence	3	6	10	0.446959	2.947703	chr14	81622661	81624332	LTR|ERV1|LTR12C	-	chr14	81623689	82075158	STRG.229676.1	+	81623689,81737482,81827806,82073927	81624369,81737695,81827901,82075158	0.600000
testis_male_adult_37_years	chr4	151955976	151955999	151955976	+	High_confidence	40	40	158	7.061951	5.909528	chr4	151955788	151956326	LTR|ERVL-MaLR|MLT1F1	+	chr4	151955990	151969381	AC097375.3|ENST00000515329.1	+	151955990,151966995	151956256,151969381	0.962025
testis_male_adult_37_years	chr10	5035337	5035338	5035337	+	High_confidence	6	6	7	0.312871	2.584963	chr10	5035129	5035473	LTR|ERVK|LTR14A	+	chr10	5035356	5097533	AKR1C3|ENST00000470862.6	+	5035356,5077869,5080745,5081681,5096409,5097433	5035616,5077977,5080901,5081885,5096577,5097533	0.714286
testis_male_adult_37_years	chr2	189675969	189675991	189675969	+	High_confidence	2	3	10	0.446959	2.846439	chr2	189675714	189676116	LTR|ERVL-MaLR|MSTB	+	chr2	189675984	189746644	ANKAR|ENST00000520309.5	+	189675984,189676455,189689526,189692254,189693073,189694980,189696149,189705022,189706937,189711048,189719571,189720618,189727855,189728266,189728659,189730494,189733106,189737682,189738564,189741341,189743274,189744741,189746379	189676037,189677091,189689964,189692418,189693177,189695161,189696369,189705224,189707146,189711153,189719813,189720787,189728097,189728420,189728821,189730601,189733229,189737841,189738682,189741451,189743474,189744788,189746644	0.600000
testis_male_adult_37_years	chr16	58684319	58684349	58684319	-	High_confidence	21	25	69	3.084017	5.482766	chr16	58684185	58684294	SINE|MIR|MIR1_Amn	-	chr16	58667277	58684181	SLC38A7|ENST00000566598.5	-	58667277,58670112,58671044,58672095,58675939,58676288,58677325,58678332,58678695,58679856,58683954	58667487,58670167,58671244,58672243,58676022,58676346,58677424,58678474,58678894,58680241,58684181	0.942029
testis_male_adult_37_years	chr19	9376415	9376416	9376415	+	High_confidence	8	8	8	0.357567	3.000000	chr19	9376391	9377057	LINE|L1|L1M1	-	chr19	9376410	9382185	ZNF177|ENST00000589262.5	+	9376410,9378258,9378961,9379526,9380056,9380667	9376423,9378344,9379088,9379619,9380139,9382185	0.750000
testis_male_adult_37_years	chr16	62725656	62725660	62725656	+	High_confidence	11	11	24	1.072701	3.844882	chr16	62724697	62726074	LTR|ERV1|LTR12C	+	chr16	62725658	62727469	STRG.246171.1	+	62725658	62727469	0.750000
testis_male_adult_37_years	chr11	21752852	21752856	21752852	-	High_confidence	59	59	94	4.201414	4.946561	chr11	21752440	21753682	LTR|ERV1|LTR12C	-	chr11	21712080	21753373	STRG.184984.1	-	21712080,21734491,21746514,21752514	21713032,21734670,21746641,21753373	0.978723
testis_male_adult_37_years	chr3	127537777	127537806	127537786	-	High_confidence	8	8	23	1.028006	4.349649	chr3	127537493	127537876	LINE|L2|L2a	+	chr3	127534234	127537778	LINC01471|ENST00000634941.1	-	127534234,127535185,127537644	127534406,127535463,127537778	0.608696
testis_male_adult_37_years	chr20	57814644	57814654	57814653	-	High_confidence	6	6	12	0.536351	3.459432	chr20	57814642	57814799	LTR|ERVL-MaLR|MLT1K	-	chr20	57813147	57814474	STRG.277482.1	-	57813147	57814474	0.583333
testis_male_adult_37_years	chr2	136087632	136087633	136087632	-	High_confidence	88	88	100	4.469589	5.484695	chr2	136087249	136088587	LTR|ERV1|LTR12C	-	chr2	136086805	136087600	STRG.36759.1	-	136086805	136087600	0.990000
testis_male_adult_37_years	chr6	118651542	118651626	118651625	-	High_confidence	68	69	515	23.018384	7.019307	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118536120	118651857	STRG.119652.6	-	118536120,118573990,118650737	118566316,118632611,118651857	0.994175
testis_male_adult_37_years	chr8	19777344	19777372	19777361	-	High_confidence	21	29	89	3.977934	5.479445	chr8	19777240	19777664	LTR|ERVL-MaLR|MLT1B	-	chr8	19761056	19777779	STRG.143715.2	-	19761056,19777253	19762253,19777779	0.617978
testis_male_adult_37_years	chr20	33694641	33694672	33694641	-	High_confidence	4	4	13	0.581047	3.584963	chr20	33694102	33694878	LINE|L2|L2a	+	chr20	33693747	33694636	STRG.275972.1	-	33693747	33694636	0.846154
testis_male_adult_37_years	chr15	75879161	75879162	75879161	+	High_confidence	4	6	6	0.268175	2.584963	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75878185	75897062	UBE2Q2|ENST00000563966.1	+	75878185,75879097,75883365,75890434,75890918,75896994	75878360,75879188,75883424,75890483,75891014,75897062	0.500000
testis_male_adult_37_years	chr15	56443447	56443458	56443447	-	RAMPAGE_only	4	4	8	0.357567	2.750000	chr15	56442919	56443421	LINE|L1|L1MEf	-	chr15	56421543	56434207	MNS1|ENST00000566386.1	-	56421543,56429085,56431372,56434137	56421778,56429193,56431498,56434207	0.750000
testis_male_adult_37_years	chr7	10085464	10085528	10085527	+	High_confidence	7	7	33	1.474964	3.775476	chr7	10085029	10085727	LTR|ERV1|MER50	-	chr7	10085492	10086804	STRG.125984.1	+	10085492	10086804	0.969697
testis_male_adult_37_years	chr10	28335269	28335306	28335295	-	High_confidence	25	30	93	4.156718	4.386927	chr10	28335237	28335330	SINE|Alu|AluYc	-	chr10	28333763	28335313	STRG.172415.1	-	28333763	28335313	0.881720
testis_male_adult_37_years	chr14	46820402	46820459	46820446	-	High_confidence	11	11	65	2.905233	5.381397	chr14	46820237	46820708	LTR|ERV1|LTR12C	+	chr14	46819090	46820483	STRG.225435.1	-	46819090	46820483	0.584615
testis_male_adult_37_years	chr13	101425839	101425840	101425839	+	RAMPAGE_only	25	28	28	1.251485	4.307355	chr13	101425668	101426033	LTR|ERVL-MaLR|MSTA	+	chr13	101452592	101716446	ITGBL1|NM_001271755.1	+	101452592,101453882,101575423,101579286,101583215,101598152,101692584,101706755,101714437,101715562	101452931,101454100,101575546,101579427,101583356,101598299,101692701,101706902,101714551,101716446	0.857143
testis_male_adult_37_years	chr14	34894857	34894906	34894900	-	High_confidence	5	5	42	1.877227	4.930484	chr14	34894826	34895089	SINE|Alu|AluSc8	+	chr14	34810941	34895082	STRG.223792.7	-	34810941,34826012,34862043,34874491,34894808	34811036,34826156,34862322,34874662,34895082	0.904762
testis_male_adult_37_years	chr1	35190183	35190214	35190207	-	High_confidence	24	26	106	4.737765	5.873156	chr1	35189980	35190245	SINE|Alu|AluSx	+	chr1	35176377	35190574	SFPQ|ENST00000470472.5	-	35176377,35177318,35177988,35187000,35187202,35187972,35189002,35189185,35190497	35176474,35177399,35178036,35187122,35187251,35188090,35189087,35189382,35190574	0.943396
testis_male_adult_37_years	chr11	107912410	107912428	107912410	+	High_confidence	9	9	23	1.028006	4.061482	chr11	107911770	107913485	Retroposon|SVA|SVA_F	+	chr11	107911849	107923149	STRG.193682.1	+	107911849,107922953	107912629,107923149	0.608696
testis_male_adult_37_years	chr13	63839910	63839947	63839910	-	RAMPAGE_only	5	6	17	0.759830	3.690117	chr13	63839745	63840345	LTR|ERV1|HERVE-int	+	chr13	63837294	63843424	OR7E104P|ENST00000641745.1	-	63837294,63838159,63839069,63839748,63841522,63843313	63837442,63838238,63839225,63839824,63841623,63843424	0.588235
testis_male_adult_37_years	chr4	117448794	117448802	117448794	-	RAMPAGE_only	43	52	84	3.754455	5.352222	chr4	117448596	117448791	LINE|L1|L1MA4A	-	chr4	117421776	117441465	STRG.80406.1	-	117421776,117430124,117438209,117441362	117421999,117430387,117438283,117441465	0.654762
testis_male_adult_37_years	chr8	53483846	53483865	53483846	-	High_confidence	3	3	7	0.312871	2.521641	chr8	53483380	53485723	LTR|ERVL|HERVL18-int	+	chr8	53483291	53483839	STRG.146709.1	-	53483291	53483839	0.714286
testis_male_adult_37_years	chr4	134383461	134383486	134383485	+	RAMPAGE_only	13	13	23	1.028006	4.142915	chr4	134383188	134383699	LTR|ERV1|LTR1D	+	chr4	134423866	134457852	LINC02462|ENST00000503009.1	+	134423866,134455293,134457743	134423956,134455524,134457852	0.695652
testis_male_adult_37_years	chr15	77284960	77284975	77284960	-	RAMPAGE_only	3	3	7	0.312871	2.521641	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.857143
testis_male_adult_37_years	chr22	17917782	17917783	17917782	-	RAMPAGE_only	6	7	8	0.357567	2.750000	chr22	17917754	17917859	LINE|L2|L2a	+	chr22	17834334	17906886	MICAL3|NM_001122731.2	-	17834334,17841821,17864898,17865923,17871836,17885877,17887169,17887322,17889033,17891484,17893807,17895283,17896245,17896723,17899447,17900841,17901877,17902630,17904631,17906548	17834549,17842017,17864986,17866012,17872023,17886051,17887232,17887435,17889230,17891632,17893904,17895410,17896361,17896981,17899548,17900997,17901979,17902747,17904839,17906886	0.750000
testis_male_adult_37_years	chr3	130727567	130727572	130727567	-	RAMPAGE_only	5	6	12	0.536351	2.751629	chr3	130727224	130727522	SINE|Alu|AluYk4	-	chr3	130716416	130725958	PIK3R4|ENST00000507330.5	-	130716416,130718388,130723413,130725898	130716599,130718534,130723587,130725958	0.916667
testis_male_adult_37_years	chr13	63740044	63740046	63740044	+	RAMPAGE_only	11	17	20	0.893918	3.821928	chr13	63739649	63740246	LTR|ERV1|HERVE-int	-	chr13	63738110	63742757	STRG.216239.2	+	63738110,63738872,63740178,63740765,63742351	63738349,63739016,63740243,63740909,63742757	1.000000
testis_male_adult_37_years	chr3	183452094	183452115	183452094	+	High_confidence	3	3	8	0.357567	2.750000	chr3	183452059	183452354	SINE|Alu|AluSz6	-	chr3	183451740	183455335	LINC00888|ENST00000487386.1	+	183451740,183452370,183454014,183455190	183451822,183452485,183454093,183455335	0.625000
testis_male_adult_37_years	chr16	76579497	76579533	76579527	+	RAMPAGE_only	4	4	19	0.849222	3.426367	chr16	76579332	76579691	LTR|ERV1|MER57C2	+	chr16	76553416	76819624	AC104151.1|ENST00000563764.2	+	76553416,76553835,76635496,76819585	76553501,76553907,76635623,76819624	0.526316
testis_male_adult_37_years	chr10	73359706	73359731	73359706	-	High_confidence	10	10	51	2.279490	5.319484	chr10	73359454	73360513	LINE|L1|L1MC4	+	chr10	73253757	73358859	CFAP70|NM_145170.3	-	73253757,73256368,73269613,73272927,73274432,73275445,73277239,73278178,73291225,73291639,73291880,73293262,73297041,73298906,73299600,73310157,73311833,73312472,73322962,73331176,73335429,73341398,73345064,73348155,73348422,73353555,73354733,73358777	73254055,73256416,73269715,73273017,73274594,73275598,73277361,73278337,73291444,73291755,73292014,73293388,73297173,73299097,73299665,73310249,73311914,73312643,73323097,73331276,73335524,73341581,73345244,73348235,73348521,73353742,73354835,73358859	0.823529
testis_male_adult_37_years	chr4	137943202	137943262	137943261	+	High_confidence	3	3	16	0.715134	3.149397	chr4	137941888	137943437	LTR|ERV1|LTR12C	+	chr4	137943026	137953854	STRG.82696.1	+	137943026,137950180,137952319	137943401,137950250,137953854	0.750000
testis_male_adult_37_years	chr14	102163225	102163226	102163225	+	RAMPAGE_only	6	7	8	0.357567	2.750000	chr14	102163031	102163345	LTR|ERVL-MaLR|MSTD	+	chr14	102157258	102208889	WDR20|ENST00000558854.5	+	102157258,102194937,102208602	102157320,102195120,102208889	0.750000
testis_male_adult_37_years	chr1	166850089	166850125	166850123	+	RAMPAGE_only	4	6	21	0.938614	4.021928	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.952381
testis_male_adult_37_years	chr16	75433980	75434033	75434032	-	High_confidence	7	8	24	1.072701	4.084963	chr16	75433678	75434907	DNA|TcMar-Tigger|Tigger17	+	chr16	75293709	75433489	CFDP1|NM_006324.2	-	75293709,75305023,75395089,75411824,75412534,75414577,75433288	75294042,75305182,75395209,75411952,75412754,75414695,75433489	0.541667
testis_male_adult_37_years	chr7	2242922	2242923	2242922	+	High_confidence	24	24	25	1.117397	3.851227	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.960000
testis_male_adult_37_years	chr17	17956008	17956161	17956088	-	RAMPAGE_only	45	47	489	21.856291	5.401474	chr17	17955692	17957026	LTR|ERV1|LTR12C	-	chr17	17893677	17963149	STRG.251803.12	-	17893677,17898595,17907446,17955414	17893810,17898674,17907531,17963149	0.993865
testis_male_adult_37_years	chr19	49817598	49817625	49817598	+	High_confidence	5	5	19	0.849222	3.721612	chr19	49817641	49817951	SINE|Alu|AluSx1	+	chr19	49818278	49836980	MED25|NM_030973.3	+	49818278,49818570,49819171,49828448,49828969,49829785,49830087,49830510,49830693,49831332,49831935,49832099,49832307,49834985,49835533,49835726,49836225,49836846	49818475,49818616,49819296,49828547,49829090,49829948,49830218,49830598,49830887,49831461,49832021,49832157,49832415,49835177,49835605,49835945,49836406,49836980	0.578947
testis_male_adult_37_years	chr2	38880037	38880060	38880043	+	RAMPAGE_only	54	55	154	6.883167	5.657761	chr2	38880011	38880140	SINE|Alu|FLAM_C	+	chr2	38876067	38882652	MORN2|ENST00000409131.2	+	38876067,38880178,38880599,38881475,38882412	38876110,38880229,38880706,38881578,38882652	0.785714
testis_male_adult_37_years	chr10	89888048	89888083	89888082	+	High_confidence	6	8	27	1.206789	3.869300	chr10	89888002	89888814	LTR|ERV1|LTR8B	+	chr10	89888943	89914940	STRG.177869.2	+	89888943,89914635	89889149,89914940	0.925926
testis_male_adult_37_years	chr12	51469039	51469071	51469058	+	RAMPAGE_only	3	3	10	0.446959	3.169925	chr12	51469022	51469155	LINE|L2|L2b	+	chr12	51461217	51515763	STRG.202686.7	+	51461217,51462309,51463613,51466404,51469613,51470391,51471286,51474341,51475044,51485786,51488698,51489699,51493703,51494944,51496986,51504028	51461291,51462456,51463714,51466512,51469788,51470525,51471532,51474447,51475206,51485900,51488860,51489951,51493772,51495118,51497124,51515763	0.700000
testis_male_adult_37_years	chr4	177728726	177728753	177728735	+	High_confidence	54	75	243	10.861102	5.754215	chr4	177728388	177728944	LTR|ERVL|LTR18B	+	chr4	177728756	177990750	LINC01098|ENST00000507870.1	+	177728756,177732366,177960761,177966674,177975803,177990478	177729017,177732479,177960905,177966778,177975943,177990750	0.925926
testis_male_adult_37_years	chr2	55048629	55048654	55048653	-	High_confidence	4	4	11	0.491655	3.277613	chr2	55048572	55048680	DNA|TcMar-Tigger|Tigger3b	-	chr2	54972188	55048666	RTN4|NM_001321862.1	-	54972188,54973562,54973820,54974694,54982514,54987490,55025085,55028163,55048545	54973198,54973621,54973867,54974764,54982653,54987698,55027485,55028220,55048666	0.909091
testis_male_adult_37_years	chr8	57343770	57343798	57343797	+	High_confidence	13	13	30	1.340877	4.351823	chr8	57343822	57343947	SINE|MIR|MIRc	+	chr8	57343806	57346843	AC068075.1|ENST00000521446.1	+	57343806,57344930,57346693	57344015,57345140,57346843	0.500000
testis_male_adult_37_years	chr17	47067462	47067513	47067498	-	High_confidence	839	1010	4780	213.646362	6.154311	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.925314
testis_male_adult_37_years	chr20	51627610	51627611	51627610	-	RAMPAGE_only	5	5	7	0.312871	2.584963	chr20	51627270	51627593	LINE|L2|L2a	-	chr20	51596513	51768328	ATP9A|ENST00000311637.9	-	51596513,51604816,51607526,51608517,51610100,51613676,51617489,51618661,51618953,51622073,51625191,51627599,51628979,51639342,51656937,51669996,51671114,51674152,51676131,51712965,51725818,51729833,51768301	51601347,51605020,51607584,51608626,51610165,51613832,51617554,51618806,51619043,51622172,51625362,51627683,51629072,51639504,51657150,51670109,51671257,51674313,51676208,51713074,51725932,51729978,51768328	0.857143
testis_male_adult_37_years	chr12	113773650	113773692	113773685	-	High_confidence	23	27	98	4.380197	5.594758	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113744576	113773683	LINC01234|NR_110026.1	-	113744576,113767074,113773614	113746595,113767208,113773683	0.877551
testis_male_adult_37_years	chr19	16863375	16863376	16863375	+	High_confidence	6	7	8	0.357567	3.000000	chr19	16863194	16863496	DNA|TcMar-Tigger|MER2	+	chr19	16863273	16878961	SIN3B|ENST00000595541.1	+	16863273,16865409,16866372,16869459,16871228,16876054,16876485,16877544,16878182,16878496	16863796,16865648,16866556,16870075,16871398,16876228,16876578,16877639,16878390,16878961	1.000000
testis_male_adult_37_years	chr11	50184201	50184218	50184215	+	High_confidence	8	8	17	0.759830	3.734522	chr11	50183088	50184666	LTR|ERV1|LTR12C	+	chr11	50184154	50185157	STRG.187216.1	+	50184154	50185157	0.941176
testis_male_adult_37_years	chr12	50763491	50763492	50763491	+	High_confidence	7	7	10	0.446959	2.725481	chr12	50763350	50763657	SINE|Alu|AluJo	+	chr12	50763709	50814192	ATF1|ENST00000552510.5	+	50763709,50780139,50795908,50809455,50814009	50763741,50780238,50796009,50809589,50814192	0.900000
testis_male_adult_37_years	chrX	135713602	135713644	135713635	+	High_confidence	6	6	29	1.296181	3.041738	chrX	135713526	135713749	LTR|ERVL|LTR41	+	chrX	135713452	135723246	CT45A1|NM_001017417.2	+	135713452,135718934,135721027,135721657,135722975	135713690,135719109,135721276,135721751,135723246	1.000000
testis_male_adult_37_years	chr14	44912624	44912659	44912628	-	High_confidence	21	21	78	3.486280	5.060782	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.756410
testis_male_adult_37_years	chr11	68503561	68503607	68503583	+	RAMPAGE_only	44	45	172	7.687693	5.647707	chr11	68503465	68503741	LINE|L2|L2b	-	chr11	68460754	68537781	STRG.188505.15	+	68460754,68461626,68478801,68519500,68537658	68460827,68476318,68505271,68519651,68537781	0.994186
testis_male_adult_37_years	chr13	25679393	25679394	25679393	+	RAMPAGE_only	4	5	6	0.268175	2.584963	chr13	25678931	25679441	LINE|L2|L2	-	chr13	25567132	25927283	ATP8A2|ENST00000491840.1	+	25567132,25570766,25571609,25574807,25577068,25578814,25579807,25581818,25589634,25591253,25699172,25769045,25774848,25828117,25837162,25839545,25860194,25860803,25862300,25927110	25567356,25570872,25571692,25574857,25577138,25578899,25579947,25581957,25589699,25591373,25699345,25769229,25774959,25828192,25837285,25839624,25860256,25860860,25862408,25927283	0.833333
testis_male_adult_37_years	chr12	4628204	4628241	4628204	-	RAMPAGE_only	2	2	9	0.402263	2.641604	chr12	4628177	4628245	LINE|RTE-BovB|MamRTE1	-	chr12	4615508	4649008	STRG.197453.3	-	4615508,4626495,4638100,4641898,4645054,4648453	4615894,4628805,4638196,4642004,4645192,4649008	1.000000
testis_male_adult_37_years	chr5	71586742	71586771	71586752	+	High_confidence	2	2	9	0.402263	2.725481	chr5	71586450	71587046	LTR|ERV1|MER51A	-	chr5	71587287	71657215	MCCC2|ENST00000512218.6	+	71587287,71592925,71596279,71599658,71602505,71604355,71632120,71634942,71635150,71641002,71643770,71646210,71649096,71650068,71652668,71656742	71587554,71592992,71596364,71599760,71602633,71604468,71632185,71635042,71635246,71641083,71643895,71646277,71649253,71650183,71652754,71657215	0.888889
testis_male_adult_37_years	chr10	61868105	61868112	61868105	-	High_confidence	15	15	26	1.162093	4.209867	chr10	61867461	61869125	LTR|ERV1|LTR12C	+	chr10	61714704	61868228	STRG.174705.1	-	61714704,61794350,61863460,61867859	61716016,61794465,61863561,61868228	0.615385
testis_male_adult_37_years	chr18	27143730	27143752	27143730	-	High_confidence	2	2	8	0.357567	2.521641	chr18	27143620	27143733	DNA|hAT-Charlie|Charlie4z	-	chr18	26915776	27143038	CHST9|ENST00000581714.5	-	26915776,26944328,27024115,27048464,27142688	26917350,26944366,27024157,27048503,27143038	0.750000
testis_male_adult_37_years	chrX	109761026	109761060	109761059	-	RAMPAGE_only	3	3	9	0.402263	3.169925	chrX	109760494	109761733	LINE|L1|L1MCa	+	chrX	109641329	109733403	ACSL4|NM_001318509.1	-	109641329,109659353,109661530,109663210,109665419,109668100,109669033,109674401,109677987,109678264,109680997,109681265,109682718,109683135,109696143,109733138	109644186,109659511,109661645,109663402,109665494,109668273,109669173,109674473,109678111,109678415,109681136,109681375,109682896,109683666,109696196,109733403	0.555556
testis_male_adult_37_years	chr10	7324799	7324816	7324799	-	RAMPAGE_only	3	3	14	0.625742	3.392747	chr10	7324630	7324961	LTR|ERVL-MaLR|MLT1B	-	chr10	7158638	7381951	STRG.170092.2	-	7158638,7170927,7171894,7172494,7175989,7188623,7197547,7200413,7202479,7205814,7220410,7227854,7243557,7248547,7276891,7283903,7285865,7367648,7370280,7381798	7163910,7171056,7172158,7172661,7176165,7188733,7197687,7200484,7202522,7205928,7220537,7227937,7243705,7248649,7276989,7284150,7285954,7367889,7370375,7381951	0.571429
testis_male_adult_37_years	chr3	88338429	88338465	88338455	+	High_confidence	39	45	184	8.224044	5.363710	chr3	88338349	88338470	DNA|TcMar-Tigger|Tigger16b	-	chr3	88338461	88465342	CSNKA2IP|ENST00000638109.1	+	88338461,88343151,88465087	88338643,88343285,88465342	0.755435
testis_male_adult_37_years	chr12	110957811	110957823	110957812	-	High_confidence	3	5	12	0.536351	3.584963	chr12	110957810	110958120	LTR|ERVL-MaLR|MLT1K	+	chr12	110951682	110957812	AC002351.1|ENST00000546852.5	-	110951682,110956238,110957391,110957569	110951842,110956336,110957480,110957812	0.666667
testis_male_adult_37_years	chr9	84409496	84409497	84409496	+	High_confidence	138	138	151	6.749080	5.706792	chr9	84408306	84409815	LTR|ERV1|LTR12C	+	chr9	84409254	84445506	STRG.163654.1	+	84409254,84412081,84443458	84409840,84412198,84445506	0.821192
testis_male_adult_37_years	chr1	118647945	118647980	118647979	+	High_confidence	57	57	116	5.184723	4.956329	chr1	118647682	118648267	LTR|ERV1|LTR12	+	chr1	118647955	118729811	STRG.11996.1	+	118647955,118729516	118648281,118729811	0.732759
testis_male_adult_37_years	chr11	21752626	21752671	21752638	-	High_confidence	3	3	20	0.893918	3.932138	chr11	21752440	21753682	LTR|ERV1|LTR12C	-	chr11	21712080	21753373	STRG.184984.1	-	21712080,21734491,21746514,21752514	21713032,21734670,21746641,21753373	0.600000
testis_male_adult_37_years	chr14	33198265	33198266	33198265	-	High_confidence	48	55	58	2.592362	3.492989	chr14	33197824	33199296	LTR|ERV1|LTR12C	-	chr14	33197729	33198282	STRG.223696.1	-	33197729	33198282	0.931034
testis_male_adult_37_years	chr12	110388512	110388513	110388512	-	RAMPAGE_only	6	6	9	0.402263	2.725481	chr12	110388426	110388463	DNA|hAT-Charlie|MER5B	-	chr12	110377590	110387277	ANAPC7|ENST00000548234.1	-	110377590,110381751,110382842,110386326	110377617,110381948,110382960,110387277	1.000000
testis_male_adult_37_years	chr8	138477427	138477452	138477444	-	High_confidence	29	35	123	5.497595	5.893814	chr8	138477285	138477512	LINE|L2|L2b	+	chr8	138265818	138477440	FAM135B|ENST00000517849.1	-	138265818,138310840,138358337,138367906,138477316	138265842,138310920,138358560,138368002,138477440	0.528455
testis_male_adult_37_years	chr15	81976967	81976971	81976970	-	High_confidence	12	12	22	0.983310	3.821928	chr15	81976336	81977583	LINE|L1|L1M3	+	chr15	81914173	81977035	STRG.238625.2	-	81914173,81925672,81925874,81953302,81954388,81967067,81967689,81976842	81915457,81925743,81926025,81953507,81954469,81967192,81967811,81977035	0.727273
testis_male_adult_37_years	chr20	32359391	32359398	32359397	+	High_confidence	5	6	10	0.446959	2.947703	chr20	32359379	32359561	DNA|hAT-Charlie|MER5A	-	chr20	32359564	32372553	ASXL1|ENST00000375689.5	+	32359564,32366383,32367726,32369014,32372163	32359791,32366466,32367729,32369123,32372553	0.800000
testis_male_adult_37_years	chr5	89003696	89003718	89003714	+	High_confidence	5	7	22	0.983310	4.106603	chr5	89002747	89004166	LTR|ERV1|LTR12C	-	chr5	89003511	89168668	STRG.96315.5	+	89003511,89094958,89150532,89168249	89004184,89095029,89150595,89168668	0.590909
testis_male_adult_37_years	chr11	68546735	68546746	68546735	+	RAMPAGE_only	14	15	33	1.474964	4.663910	chr11	68546622	68546786	LTR|ERVL-MaLR|MLT1L	-	chr11	68537815	68596218	STRG.188505.8	+	68537815,68544837,68548066,68551120,68554144,68558565,68564302,68567013,68569747,68571039,68574108,68575957,68583042,68590659,68591575,68596096	68537891,68545024,68548204,68551186,68554257,68558679,68564432,68567166,68569897,68571104,68574224,68576043,68588024,68590714,68591706,68596218	0.878788
testis_male_adult_37_years	chr7	64999443	64999444	64999443	-	RAMPAGE_only	78	82	89	3.977934	6.040420	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64990808	65006653	ERV3-1|ENST00000394323.2	-	64990808,65006540	64993414,65006653	0.629213
testis_male_adult_37_years	chr15	89226340	89226341	89226340	+	RAMPAGE_only	16	16	16	0.715134	3.500000	chr15	89226141	89226532	LTR|ERVL-MaLR|MLT1B	+	chr15	89243948	89317261	FANCI|ENST00000300027.12	+	89243948,89247628,89258703,89260712,89261584,89261820,89263418,89263902,89264521,89268398,89273376,89274167,89276710,89278686,89281169,89281764,89283135,89285095,89290212,89291612,89292687,89292941,89293832,89299799,89300299,89301325,89303863,89305114,89305340,89305604,89306006,89307475,89307612,89312903,89314611,89315281,89316396	89244033,89247731,89258776,89260843,89261741,89261878,89263460,89264026,89264607,89268525,89273469,89274304,89276891,89278774,89281300,89281835,89283250,89285218,89290281,89291714,89292864,89293063,89293997,89299966,89300385,89301442,89303915,89305242,89305409,89305698,89306194,89307529,89307672,89312972,89314707,89315389,89317261	0.812500
testis_male_adult_37_years	chr16	61128983	61129042	61129041	+	High_confidence	16	16	92	4.112022	5.569508	chr16	61127777	61129337	LTR|ERV1|LTR12C	-	chr16	61128863	61194123	STRG.246034.1	+	61128863,61193622	61129393,61194123	0.858696
testis_male_adult_37_years	chr6	15758201	15758205	15758203	-	High_confidence	27	80	95	4.246110	5.261513	chr6	15757782	15759321	LTR|ERV1|LTR12C	-	chr6	15744718	15758238	STRG.108976.3	-	15744718,15757634	15749999,15758238	0.957895
testis_male_adult_37_years	chr3	19234555	19234570	19234555	+	RAMPAGE_only	8	8	21	0.938614	4.121928	chr3	19233730	19234805	LTR|ERV1|LTR12D	-	chr3	19148533	19534739	KCNH8|ENST00000452398.5	+	19148533,19253653,19281197,19342586,19346651,19347724,19390480,19395103,19438163,19450105,19456767,19510362,19512969,19515321,19517997,19533394	19148795,19253887,19281329,19342714,19346734,19347965,19390638,19395311,19438361,19451404,19456982,19510401,19513325,19515428,19518074,19534739	0.523810
testis_male_adult_37_years	chr6	105176273	105176294	105176293	-	High_confidence	4	4	9	0.402263	3.169925	chr6	105176149	105176515	LTR|ERV1|MER57D	-	chr6	105157899	105176255	POPDC3|NR_024539.1	-	105157899,105159710,105161795,105176192	105158751,105159819,105162160,105176255	0.888889
testis_male_adult_37_years	chr21	29000158	29000197	29000188	-	RAMPAGE_only	11	12	31	1.385573	4.081728	chr21	29000000	29001393	LTR|ERV1|LTR12C	+	chr21	28994830	29002244	STRG.280515.2	-	28994830,28998588	28998041,29002244	0.967742
testis_male_adult_37_years	chr6	12286799	12286800	12286799	+	RAMPAGE_only	10	10	11	0.491655	3.121928	chr6	12286831	12287147	SINE|Alu|AluJr	+	chr6	12288310	12297194	STRG.108443.1	+	12288310,12290628,12292340,12293940,12294260,12295961	12288495,12290693,12292509,12294096,12294404,12297194	0.818182
testis_male_adult_37_years	chr6	26482505	26482541	26482514	-	High_confidence	26	27	116	5.184723	5.765317	chr6	26482449	26482577	DNA|hAT-Charlie|Charlie1	+	chr6	26471943	26482509	LOC285819|NR_038992.1	-	26471943,26476151,26477834,26482471	26472193,26477481,26479120,26482509	0.956897
testis_male_adult_37_years	chr15	45441849	45441878	45441877	-	High_confidence	13	13	38	1.698444	4.350209	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45430651	45441808	AC025580.1|ENST00000559553.1	-	45430651,45433612,45441780	45430814,45434150,45441808	0.894737
testis_male_adult_37_years	chr16	29884108	29884124	29884123	-	RAMPAGE_only	7	7	15	0.670438	3.807355	chr16	29884010	29884309	LTR|ERVL-MaLR|MLT1K	+	chr16	29876853	29886019	SEZ6L2|ENST00000568407.2	-	29876853,29877270,29878286,29879863,29885585	29876950,29877467,29878425,29880064,29886019	0.533333
testis_male_adult_37_years	chr7	23598137	23598138	23598137	+	High_confidence	5	5	8	0.357567	2.521641	chr7	23598094	23598212	SINE|MIR|MIRb	+	chr7	23598160	23643237	CCDC126|ENST00000410069.1	+	23598160,23604141,23611170,23642930	23598222,23604279,23611553,23643237	0.875000
testis_male_adult_37_years	chr10	15160142	15160147	15160142	-	High_confidence	2	2	7	0.312871	2.584963	chr10	15160133	15160271	LTR|Gypsy?|LTR85c	+	chr10	15108293	15161079	STRG.170985.3	-	15108293,15109701,15112795,15119342,15128349,15130141,15132816,15133052,15133244,15135273,15141421,15159832	15109215,15109839,15112963,15119513,15128458,15130312,15132933,15133144,15133363,15135418,15141557,15161079	0.857143
testis_male_adult_37_years	chr15	76797567	76797589	76797588	-	High_confidence	14	14	36	1.609052	4.359378	chr15	76797305	76798069	LINE|L1|L1M4	+	chr15	76771882	76797608	SCAPER|ENST00000567618.5	-	76771882,76774854,76795279,76797539	76771954,76775117,76795440,76797608	0.750000
testis_male_adult_37_years	chr20	7803100	7803135	7803100	-	High_confidence	67	67	105	4.693069	4.791842	chr20	7802788	7804081	LTR|ERV1|LTR12C	-	chr20	7801980	7803242	STRG.273169.1	-	7801980	7803242	0.923810
testis_male_adult_37_years	chr1	153637550	153637551	153637550	+	High_confidence	5	5	8	0.357567	2.521641	chr1	153637372	153637665	SINE|Alu|AluSg	+	chr1	153638083	153645470	CHTOP|ENST00000368687.1	+	153638083,153642245,153643226,153645063	153638448,153642429,153643364,153645470	0.625000
testis_male_adult_37_years	chr1	100646987	100647014	100646988	-	High_confidence	8	15	37	1.653748	4.756619	chr1	100646491	100651884	LINE|L1|L1PA11	+	chr1	100627048	100647004	LINC01349|NR_038914.1	-	100627048,100628824,100640488,100645169,100646902	100627302,100628942,100640772,100645235,100647004	0.702703
testis_male_adult_37_years	chr15	34018683	34018721	34018683	-	High_confidence	33	34	138	6.168033	5.143720	chr15	34018262	34019186	LTR|ERV1|LTR12	-	chr15	34001208	34019195	STRG.233634.6	-	34001208,34018109	34003209,34019195	0.978261
testis_male_adult_37_years	chr6	17015558	17015559	17015558	-	High_confidence	298	299	306	13.676943	4.357279	chr6	17015186	17016323	LTR|ERV1|LTR12D	-	chr6	17012782	17015543	STRG.109056.1	-	17012782	17015543	0.957516
testis_male_adult_37_years	chr14	51857451	51857498	51857497	+	RAMPAGE_only	9	10	42	1.877227	4.916127	chr14	51857017	51857861	LINE|L2|L2c	-	chr14	51860303	51969800	GNG2|NM_001243773.1	+	51860303,51877620,51950649,51966558	51860790,51877657,51950765,51969800	0.785714
testis_male_adult_37_years	chr13	53816578	53816611	53816610	+	RAMPAGE_only	3	3	6	0.268175	2.584963	chr13	53816517	53816775	LINE|L2|L2	-	chr13	53815418	53876119	LINC00558|NR_047488.1	+	53815418,53838738,53840682,53844344,53870464,53873451	53815493,53838789,53840810,53844522,53870527,53876119	0.500000
testis_male_adult_37_years	chr5	57576090	57576106	57576090	+	RAMPAGE_only	2	4	6	0.268175	2.584963	chr5	57575912	57576274	LTR|ERVL-MaLR|MSTA	+	chr5	57574026	57614341	AC008780.1|ENST00000513392.1	+	57574026,57577833,57578835,57614176	57574100,57577924,57578914,57614341	0.500000
testis_male_adult_37_years	chr1	32897766	32897776	32897766	-	High_confidence	5	5	11	0.491655	3.321928	chr1	32897689	32897834	LINE|L2|L2c	+	chr1	32897003	32897771	STRG.2987.6	-	32897003	32897771	0.636364
testis_male_adult_37_years	chr17	47056566	47056612	47056571	-	RAMPAGE_only	2	2	13	0.581047	3.418296	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.615385
testis_male_adult_37_years	chr2	9501418	9501456	9501418	+	RAMPAGE_only	6	6	33	1.474964	4.567100	chr2	9501401	9501551	LINE|L1|L1ME3Cz	+	chr2	9505444	9512412	AC080162.1|ENST00000480764.5	+	9505444,9506786,9512316	9505610,9507015,9512412	0.545455
testis_male_adult_37_years	chr20	20076493	20076529	20076504	-	High_confidence	23	24	77	3.441584	4.378174	chr20	20076072	20076574	LTR|ERVL-MaLR|MLT1G1	+	chr20	20075475	20076495	STRG.274024.1	-	20075475	20076495	0.987013
testis_male_adult_37_years	chr5	95395345	95395391	95395386	+	RAMPAGE_only	6	6	14	0.625742	3.392747	chr5	95395157	95395464	SINE|Alu|AluY	+	chr5	95392851	95428732	FAM81B|ENST00000503099.1	+	95392851,95396110,95413983,95420283,95428602	95392897,95396175,95414190,95420402,95428732	0.785714
testis_male_adult_37_years	chr12	30755009	30755051	30755009	+	High_confidence	3	3	18	0.804526	3.852169	chr12	30754999	30755260	LINE|L1|L1M4b	+	chr12	30755029	30755596	STRG.200894.1	+	30755029	30755596	0.777778
testis_male_adult_37_years	chr17	81579828	81579839	81579838	-	RAMPAGE_only	40	40	68	3.039321	5.487658	chr17	81579671	81579901	LINE|L2|L2	+	chr17	81556884	81577433	NPLOC4|NR_130139.1	-	81556884,81565504,81567416,81569015,81572016,81577357	81559416,81565607,81567533,81569111,81572088,81577433	0.691176
testis_male_adult_37_years	chr4	46909219	46909245	46909244	-	High_confidence	71	72	157	7.017255	6.048143	chr4	46909121	46909457	LTR|ERVL|LTR79	-	chr4	46734826	46909235	COX7B2|NM_130902.2	-	46734826,46844959,46909159	46735241,46845014,46909235	0.719745
testis_male_adult_37_years	chr16	63618044	63618046	63618045	-	High_confidence	42	60	62	2.771145	5.006624	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63129640	63618046	STRG.246413.1	-	63129640,63305346,63334599,63531224,63617692	63131268,63305420,63334667,63531304,63618046	0.870968
testis_male_adult_37_years	chr1	3741254	3741274	3741273	-	RAMPAGE_only	4	4	8	0.357567	2.500000	chr1	3741082	3741698	LTR|ERV1|MER51A	+	chr1	3739847	3743187	TP73-AS1|ENST00000648935.1	-	3739847,3743060	3742957,3743187	1.000000
testis_male_adult_37_years	chr8	116648828	116648905	116648847	-	RAMPAGE_only	7	7	50	2.234795	4.711349	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.980000
testis_male_adult_37_years	chr17	76807090	76807091	76807090	+	High_confidence	62	62	75	3.352192	4.886575	chr17	76805947	76807489	LTR|ERV1|LTR12C	+	chr17	76807095	76831367	STRG.257939.31	+	76807095,76830155	76807655,76831367	0.866667
testis_male_adult_37_years	chr2	161254620	161254675	161254638	-	High_confidence	9	9	28	1.251485	4.307355	chr2	161254585	161254861	LINE|L1|L1MB3	+	chr2	161223257	161254643	LOC101929512|NR_110593.1	-	161223257,161248523,161250995,161254584	161223483,161248585,161251222,161254643	0.785714
testis_male_adult_37_years	chr20	38319870	38319896	38319870	+	RAMPAGE_only	2	2	9	0.402263	2.947703	chr20	38319803	38319948	SINE|MIR|MIRb	-	chr20	38317671	38335641	BPI|ENST00000489102.2	+	38317671,38318412,38320182,38323921,38324773,38326264,38327587,38331047,38334429,38335597	38317737,38318476,38320274,38324046,38324833,38326432,38327655,38331090,38334493,38335641	0.777778
testis_male_adult_37_years	chr2	142748977	142748989	142748988	+	RAMPAGE_only	5	5	20	0.893918	4.021928	chr2	142748611	142749226	LTR|ERV1|LTR9D	-	chr2	142877497	143055832	KYNU|ENST00000264170.8	+	142877497,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142877736,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143055832	0.600000
testis_male_adult_37_years	chr9	34482681	34482682	34482681	+	RAMPAGE_only	56	58	79	3.530975	5.131055	chr9	34481502	34483342	LTR|ERV1|LTR12C	-	chr9	34485045	34493328	DNAI1|ENST00000488369.1	+	34485045,34485436,34487945,34489173,34489322,34490011,34490368,34491494,34493193	34485240,34485517,34488018,34489201,34489449,34490124,34490488,34491554,34493328	0.784810
testis_male_adult_37_years	chr3	12825767	12825768	12825767	+	RAMPAGE_only	34	34	49	2.190099	4.942783	chr3	12825723	12825953	SINE|MIR|MIR	+	chr3	12796685	12834804	CAND2|ENST00000650119.1	+	12796685,12803487,12806388,12807305,12808209,12810058,12812989,12813245,12815140,12815866,12816373,12820085,12825469,12827439,12831464,12833754	12796788,12803631,12806496,12807460,12808333,12810324,12813095,12813388,12815433,12816008,12817876,12820181,12825639,12827604,12831572,12834804	0.795918
testis_male_adult_37_years	chr3	105150215	105150216	105150215	-	High_confidence	4	7	7	0.312871	2.521641	chr3	105150057	105150393	LTR|ERVL-MaLR|THE1A	-	chr3	105149821	105150098	STRG.58212.1	-	105149821	105150098	0.571429
testis_male_adult_37_years	chr14	89244800	89244804	89244803	-	RAMPAGE_only	4	4	8	0.357567	2.807355	chr14	89244799	89244840	SINE|MIR|MIR3	-	chr14	89161399	89412476	FOXN3|ENST00000615335.4	-	89161399,89180700,89280949,89350671,89411933	89162969,89180806,89281014,89350808,89412476	0.625000
testis_male_adult_37_years	chr9	123652014	123652033	123652014	-	RAMPAGE_only	4	4	12	0.536351	3.095795	chr9	123651992	123652144	DNA|hAT-Ac|OldhAT1	-	chr9	123401809	123676791	DENND1A|ENST00000394215.6	-	123401809,123403401,123440359,123450692,123452275,123454738,123457347,123457792,123557569,123583168,123609435,123630375,123652012,123667025,123671290,123676719	123401912,123403490,123440491,123450749,123452347,123454779,123457435,123457897,123557695,123583270,123609481,123630476,123652123,123667079,123671371,123676791	0.833333
testis_male_adult_37_years	chr2	196068421	196068433	196068432	-	High_confidence	7	7	13	0.581047	2.815072	chr2	196068200	196068411	SINE|MIR|MIRc	-	chr2	196028007	196068487	DNAH7|ENST00000427816.1	-	196028007,196047351,196048295,196051186,196058053,196068351	196028047,196047499,196048404,196051249,196058116,196068487	0.923077
testis_male_adult_37_years	chr5	72771732	72771733	72771732	-	High_confidence	79	80	94	4.201414	5.484075	chr5	72771382	72771928	LTR|ERVL-MaLR|MLT1F	-	chr5	72770383	72771724	STRG.94705.1	-	72770383,72771614	72770866,72771724	0.829787
testis_male_adult_37_years	chr18	21812462	21812466	21812462	+	RAMPAGE_only	4	5	8	0.357567	2.750000	chr18	21811938	21812701	LINE|L2|L2c	-	chr18	21740841	21815041	STRG.260047.3	+	21740841,21765771,21768622,21773623,21778102,21779480,21791334,21798083,21799840,21803906,21805556	21741812,21765943,21768752,21773728,21778169,21779685,21791557,21798228,21799974,21804014,21815041	0.750000
testis_male_adult_37_years	chr4	137734567	137734568	137734567	+	High_confidence	296	299	344	15.375387	4.577072	chr4	137733562	137734980	LTR|ERV1|LTR12C	+	chr4	137734326	137735503	STRG.82491.1	+	137734326	137735503	0.976744
testis_male_adult_37_years	chr22	24572936	24572958	24572936	+	RAMPAGE_only	2	2	8	0.357567	2.807355	chr22	24572952	24573216	SINE|Alu|AluJr	+	chr22	24555649	24574964	SNRPD3|NM_001278656.1	+	24555649,24557656,24567983,24571915	24556057,24557800,24568176,24574964	0.875000
testis_male_adult_37_years	chr15	36702042	36702083	36702067	+	High_confidence	9	12	45	2.011315	4.774861	chr15	36701895	36702134	DNA|DNA|MER126	+	chr15	36702049	36808457	C15orf41|ENST00000566932.5	+	36702049,36709222,36709855,36790207,36808323	36702124,36709288,36709961,36790358,36808457	0.666667
testis_male_adult_37_years	chr12	67718666	67718667	67718666	-	RAMPAGE_only	6	6	6	0.268175	2.584963	chr12	67718353	67719796	LTR|ERV1|LTR12C	-	chr12	67709046	67729475	LINC02421|ENST00000542219.1	-	67709046,67715321,67718342,67722378,67729395	67710685,67716203,67718541,67722713,67729475	1.000000
testis_male_adult_37_years	chr10	110907743	110907744	110907743	-	RAMPAGE_only	6	6	7	0.312871	2.584963	chr10	110907540	110907748	DNA|hAT-Charlie|Charlie2a	-	chr10	110900233	110904945	BBIP1|ENST00000605265.1	-	110900233	110904945	0.571429
testis_male_adult_37_years	chr22	38168076	38168090	38168076	-	High_confidence	6	7	15	0.670438	3.506891	chr22	38167963	38168270	LINE|L2|L2b	+	chr22	38140133	38168077	PLA2G6|ENST00000479641.5	-	38140133,38143104,38145437,38167942	38140169,38143288,38145653,38168077	0.933333
testis_male_adult_37_years	chr17	64230696	64230729	64230728	-	High_confidence	15	17	51	2.279490	4.907336	chr17	64230696	64230803	SINE|MIR|MIR3	+	chr17	64150843	64230756	STRG.256337.5	-	64150843,64152944,64154841,64160800,64171099,64177324,64188167,64193558,64194894,64212573,64230506	64150961,64153154,64154967,64160933,64171199,64177471,64188415,64193889,64195095,64214242,64230756	0.901961
testis_male_adult_37_years	chr7	155667657	155667682	155667657	+	RAMPAGE_only	8	8	21	0.938614	3.884184	chr7	155667412	155667718	LINE|L1|L1MC4	-	chr7	155672879	155745720	RBM33|ENST00000307403.6	+	155672879,155678607,155680589,155700772,155706859,155707293,155711202,155718384,155737529,155738059,155741818,155744960	155672915,155678684,155680908,155700944,155707068,155707380,155711455,155718443,155737662,155740026,155742106,155745720	0.619048
testis_male_adult_37_years	chr8	13629646	13629666	13629665	+	High_confidence	33	33	82	3.665063	5.787321	chr8	13629592	13629869	LINE|L2|L2	-	chr8	13629655	13632045	STRG.142988.1	+	13629655,13630546,13631691	13629752,13630666,13632045	0.524390
testis_male_adult_37_years	chr12	11486679	11486692	11486691	-	High_confidence	9	10	17	0.759830	3.500000	chr12	11486291	11486668	LTR|ERV1|MER110A	-	chr12	11430361	11486632	AC078950.1|ENST00000540635.1	-	11430361,11431481,11434991,11486048,11486563	11430464,11431562,11435158,11486151,11486632	0.588235
testis_male_adult_37_years	chr16	4239748	4239749	4239748	-	High_confidence	8	11	12	0.536351	3.095795	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.750000
testis_male_adult_37_years	chr9	94511562	94511621	94511620	-	RAMPAGE_only	5	7	21	0.938614	3.511085	chr9	94511171	94511695	LTR|ERVL?|LTR87	+	chr9	94485083	94488738	STRG.164627.1	-	94485083	94488738	0.761905
testis_male_adult_37_years	chr3	122183672	122183719	122183718	+	High_confidence	7	7	23	1.028006	4.011365	chr3	122183547	122183832	LINE|L2|L2c	-	chr3	122183727	122184103	STRG.60331.1	+	122183727	122184103	0.565217
testis_male_adult_37_years	chr2	79565804	79565805	79565804	+	RAMPAGE_only	4	4	6	0.268175	2.584963	chr2	79565473	79566134	LINE|L2|L2	-	chr2	79523182	80648868	CTNNA2|NM_001282598.1	+	79523182,79651551,79744386,79858012,79869815,79874075,79909593,80393210,80419448,80544981,80545906,80555692,80574162,80581705,80589303,80604073,80608183,80647584	79523309,79651658,79744582,79858179,79869935,79874342,79909797,80393291,80419601,80545074,80546063,80555893,80574314,80581819,80589485,80604179,80608318,80648868	0.500000
testis_male_adult_37_years	chr16	4424871	4424912	4424895	-	High_confidence	2	2	10	0.446959	3.321928	chr16	4424649	4424942	LINE|L2|L2a	+	chr16	4416724	4425523	CORO7|ENST00000572140.1	-	4416724,4420358,4425477	4416961,4420553,4425523	0.600000
testis_male_adult_37_years	chr9	72521643	72521682	72521667	+	High_confidence	4	4	12	0.536351	3.277613	chr9	72521483	72521764	SINE|Alu|AluSx	+	chr9	72521800	72836351	TMC1|ENST00000297784.9	+	72521800,72577901,72616367,72627920,72648596,72688708,72694542,72700517,72740118,72742443,72751849,72754785,72772412,72788338,72789122,72791885,72792190,72805381,72816142,72820841,72826868,72830450,72830630,72835950	72521913,72578023,72616477,72628063,72648664,72688756,72694714,72700643,72740209,72742525,72751956,72754884,72772555,72788483,72789317,72792065,72792352,72805510,72816210,72821081,72826994,72830529,72830682,72836351	0.916667
testis_male_adult_37_years	chr13	52661530	52661538	52661530	+	RAMPAGE_only	3	3	6	0.268175	2.584963	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
testis_male_adult_37_years	chr2	21317679	21317709	21317708	+	High_confidence	84	86	247	11.039885	5.515060	chr2	21317605	21318633	LTR|ERV1|LTR78	+	chr2	21317659	21320590	STRG.25413.1	+	21317659,21318921	21317813,21320590	0.975709
testis_male_adult_37_years	chr10	81503636	81503637	81503636	+	High_confidence	163	164	167	7.464214	5.406641	chr10	81502670	81504049	LTR|ERV1|LTR12C	+	chr10	81503630	81504061	STRG.176908.1	+	81503630	81504061	0.826347
testis_male_adult_37_years	chr2	95833895	95833927	95833926	-	RAMPAGE_only	4	5	10	0.446959	2.725481	chr2	95833611	95833923	LINE|L1|L1PA12	-	chr2	95807117	95940908	STRG.33314.5	-	95807117,95814049,95851165,95851693,95852125,95853708,95855265,95857308,95859860,95867439,95876438,95880426,95880594,95882301,95882468,95884172,95884339,95886047,95886215,95887924,95888091,95889798,95889965,95891664,95891831,95893532,95893695,95895398,95895561,95897269,95897436,95899144,95899307,95901014,95901177,95903052,95904760,95904923,95906630,95906793,95908668,95910372,95910539,95912243,95912406,95914107,95914274,95915979,95916142,95917854,95918013,95919732,95919891,95921606,95921781,95923494,95923660,95925351,95925518,95927213,95927380,95929071,95929238,95935453,95935615,95938986	95813957,95837108,95851195,95851787,95852196,95853861,95856180,95857492,95860074,95867581,95876509,95880499,95880623,95882374,95882497,95884245,95884368,95886120,95886244,95887997,95888120,95889871,95889994,95891737,95891860,95893605,95893724,95895471,95895590,95897342,95897465,95899217,95899336,95901087,95902958,95903081,95904833,95904952,95906703,95906822,95908697,95910445,95910568,95912316,95912435,95914180,95914303,95916052,95916171,95917927,95918042,95919805,95919920,95921679,95921810,95923567,95923689,95925424,95925547,95927286,95927409,95929144,95929267,95935526,95935644,95940908	0.900000
testis_male_adult_37_years	chr11	44573124	44573139	44573124	+	High_confidence	3	3	7	0.312871	2.521641	chr11	44572838	44573200	LTR|ERVL|LTR79	-	chr11	44573077	44605407	CD82|ENST00000525813.5	+	44573077,44587474,44594642,44600157,44605057,44605354	44573234,44587556,44594725,44600230,44605182,44605407	0.714286
testis_male_adult_37_years	chr6	33683832	33683857	33683846	+	RAMPAGE_only	3	3	12	0.536351	3.095795	chr6	33683659	33683854	SINE|MIR|MIRc	-	chr6	33621378	33696574	ITPR3|NM_002224.3	+	33621378,33640483,33655765,33657931,33658669,33659020,33659465,33662527,33662910,33663499,33663737,33664869,33665052,33665834,33667128,33667791,33668514,33668973,33670324,33670670,33671164,33672028,33673590,33674207,33675690,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33683206,33684019,33684356,33684597,33684773,33685358,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33621691,33640554,33655887,33658018,33658828,33659119,33659549,33662674,33663006,33663550,33663880,33664969,33665213,33665976,33667290,33667964,33668634,33669156,33670576,33670815,33671306,33672228,33673720,33674265,33675856,33676932,33677089,33677629,33678543,33678839,33680133,33680454,33680680,33682644,33683397,33684168,33684465,33684688,33684943,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696574	0.750000
testis_male_adult_37_years	chr12	49994155	49994156	49994155	-	RAMPAGE_only	5	8	8	0.357567	2.500000	chr12	49994071	49994113	LINE|L2|L2b	-	chr12	49976922	49992358	RACGAP1|ENST00000548961.5	-	49976922,49991997,49992244	49977059,49992133,49992358	1.000000
testis_male_adult_37_years	chr4	12223435	12223502	12223458	+	High_confidence	5	7	25	1.117397	3.725104	chr4	12223223	12223497	LTR|ERVL|LTR16C	-	chr4	12223450	12251286	LOC101929019|NR_125910.1	+	12223450,12243051,12246934,12250986	12223628,12243178,12246970,12251286	0.600000
testis_male_adult_37_years	chr14	23729724	23729747	23729724	-	High_confidence	16	16	42	1.877227	5.003056	chr14	23729650	23729737	SINE|MIR|MIR3	+	chr14	23729037	23729741	AL160237.1|ENST00000554526.1	-	23729037,23729577	23729445,23729741	0.571429
testis_male_adult_37_years	chr1	89272729	89272784	89272783	-	High_confidence	4	4	12	0.536351	3.251629	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89262697	89272804	GBP5|ENST00000443807.1	-	89262697,89263735,89264685,89266345,89266956,89267416,89268728,89269365	89262785,89263948,89264966,89266588,89267153,89267526,89268856,89272804	1.000000
testis_male_adult_37_years	chr3	195688740	195688758	195688757	+	High_confidence	4	4	12	0.536351	3.277613	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688755	195708806	MUC20-OT1|ENST00000628547.2	+	195688755,195689338,195696360,195699029,195708133,195708746	195688797,195689438,195696589,195699178,195708435,195708806	0.666667
testis_male_adult_37_years	chr3	28199875	28199880	28199879	-	High_confidence	13	15	22	0.983310	3.684184	chr3	28199437	28200978	LTR|ERV1|LTR12C	-	chr3	28169071	28199856	STRG.51432.1	-	28169071,28199426	28169537,28199856	0.909091
testis_male_adult_37_years	chr16	10031524	10031544	10031530	-	High_confidence	3	3	12	0.536351	3.277613	chr16	10031205	10031605	LINE|L2|L2a	+	chr16	9938152	10031580	GRIN2A|ENST00000566670.2	-	9938152,10031324	9938551,10031580	0.833333
testis_male_adult_37_years	chr4	92985330	92985370	92985340	+	High_confidence	5	5	20	0.893918	3.431624	chr4	92985225	92985536	SINE|Alu|AluY	-	chr4	92985350	93259669	STRG.78087.5	+	92985350,93084994,93110747,93207403,93216737,93224613,93238370,93258895	92985537,93085279,93110953,93207457,93216911,93224775,93238490,93259669	0.900000
testis_male_adult_37_years	chr20	50130092	50130118	50130092	-	RAMPAGE_only	17	18	76	3.396888	5.455745	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.934211
testis_male_adult_37_years	chr16	74181951	74181978	74181977	-	High_confidence	3	3	9	0.402263	3.169925	chr16	74181679	74182211	LTR|ERVL-MaLR|MLT1F2	+	chr16	74181551	74182236	STRG.247934.1	-	74181551	74182236	0.555556
testis_male_adult_37_years	chrX	72305913	72305914	72305913	-	High_confidence	9577	11025	11198	500.504594	5.635602	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144885.1	-	72301637,72302809,72305301,72305824	72302244,72302934,72305422,72305914	0.976871
testis_male_adult_37_years	chr10	103140177	103140233	103140177	-	High_confidence	4	6	42	1.877227	4.907072	chr10	103139920	103140218	SINE|Alu|AluJo	-	chr10	103099925	103140192	NT5C2|ENST00000487810.5	-	103099925,103101044,103101234,103105705,103106588,103111744,103139405,103140116	103100019,103101102,103101326,103105801,103106706,103111805,103139479,103140192	0.571429
testis_male_adult_37_years	chr12	2798816	2798822	2798816	+	High_confidence	2	2	6	0.268175	2.584963	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	1.000000
testis_male_adult_37_years	chr7	92477649	92477673	92477649	+	RAMPAGE_only	30	30	51	2.279490	5.280268	chr7	92477412	92478192	LTR|ERV1|LTR17	-	chr7	92467384	92494712	STRG.134258.10	+	92467384,92491242,92492171	92477819,92491536,92494712	0.745098
testis_male_adult_37_years	chr9	76860493	76860498	76860493	-	RAMPAGE_only	7	7	16	0.715134	2.866248	chr9	76860000	76860542	LTR|ERV1|LTR8B	-	chr9	76846598	76869182	PRUNE2|ENST00000489555.1	-	76846598,76850462,76854103,76868935	76846678,76850665,76854208,76869182	0.937500
testis_male_adult_37_years	chr11	97011223	97011258	97011257	+	High_confidence	34	34	81	3.620367	4.174897	chr11	97011001	97011686	LTR|ERV1|LTR12_	+	chr11	97011243	97011855	STRG.192223.1	+	97011243	97011855	0.950617
testis_male_adult_37_years	chr3	49182213	49182214	49182213	-	High_confidence	152	152	160	7.151343	5.171081	chr3	49181796	49183179	LTR|ERV1|LTR12C	-	chr3	49181542	49182332	STRG.53945.1	-	49181542	49182332	0.912500
testis_male_adult_37_years	chr10	15535776	15535777	15535776	+	High_confidence	110	110	117	5.229419	4.694514	chr10	15534785	15536190	LTR|ERV1|LTR12C	+	chr10	15535763	15536423	STRG.171026.1	+	15535763	15536423	0.948718
testis_male_adult_37_years	chr9	37752900	37752901	37752900	+	High_confidence	164	166	168	7.508910	4.768580	chr9	37752210	37753281	LTR|ERV1|LTR12C	+	chr9	37752917	37765873	STRG.160753.5	+	37752917,37761902,37763628	37753852,37762685,37765873	0.988095
testis_male_adult_37_years	chr10	89888929	89888930	89888929	+	High_confidence	14	15	17	0.759830	3.875000	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89888943	89914940	STRG.177869.2	+	89888943,89914635	89889149,89914940	0.705882
testis_male_adult_37_years	chr16	4355592	4355593	4355592	-	High_confidence	239	240	240	10.727014	6.461262	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.866667
testis_male_adult_37_years	chr12	64139255	64139265	64139264	+	RAMPAGE_only	14	14	38	1.698444	4.465946	chr12	64138619	64139275	DNA|hAT-Charlie|MER20B	-	chr12	64127636	64142566	SRGAP1|ENST00000542841.1	+	64127636,64142294	64128200,64142566	0.736842
testis_male_adult_37_years	chr1	39310256	39310275	39310274	+	RAMPAGE_only	2	3	8	0.357567	3.000000	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	1.000000
testis_male_adult_37_years	chr1	111788812	111788833	111788812	-	RAMPAGE_only	4	4	8	0.357567	2.750000	chr1	111788716	111788880	SINE|MIR|MIR	+	chr1	111770661	111982796	KCND3|ENST00000369697.5	-	111770661,111777025,111780224,111780689,111786943,111981620	111776278,111777273,111780314,111780791,111787106,111982796	0.750000
testis_male_adult_37_years	chr6	14661307	14661314	14661307	+	High_confidence	39	39	82	3.665063	5.544704	chr6	14661131	14661517	LINE|L2|L2c	-	chr6	14661324	14661893	STRG.108890.1	+	14661324	14661893	0.890244
testis_male_adult_37_years	chr9	84409773	84409810	84409782	+	RAMPAGE_only	3	3	9	0.402263	3.169925	chr9	84409815	84410083	SINE|Alu|AluSz	+	chr9	84316513	84657077	AL157886.1|ENST00000650453.1	+	84316513,84497468,84521061,84583196,84611636,84611834,84655213	84317049,84497746,84521225,84583283,84611749,84611997,84657077	0.555556
testis_male_adult_37_years	chr2	37236705	37236720	37236712	+	RAMPAGE_only	5	5	17	0.759830	3.327820	chr2	37236494	37236798	SINE|Alu|AluY	+	chr2	37231819	37252781	STRG.27066.5	+	37231819,37232105,37236095,37237756,37241577,37243862,37246051,37247455,37248134	37231879,37232266,37236176,37237867,37242693,37243973,37246195,37247629,37252781	0.647059
testis_male_adult_37_years	chr19	2907088	2907119	2907107	+	High_confidence	28	29	67	2.994625	4.927977	chr19	2906922	2907108	LTR|ERVL|LTR52-int	-	chr19	2907107	2918346	ZNF57|ENST00000523428.5	+	2907107,2915521,2916077,2916923	2907159,2915648,2916249,2918346	0.925373
testis_male_adult_37_years	chr7	37492547	37492581	37492580	+	High_confidence	336	338	513	22.928992	5.534654	chr7	37491930	37492896	LTR|ERV1|LTR12D	+	chr7	37492560	37543430	STRG.129695.1	+	37492560,37530572,37536357	37493041,37530725,37543430	0.939571
testis_male_adult_37_years	chr4	177381462	177381499	177381486	+	High_confidence	19	19	75	3.352192	4.314957	chr4	177380669	177382315	LTR|ERV1|LTR28C	-	chr4	177381443	177382775	STRG.86596.1	+	177381443,177382588	177381654,177382775	0.933333
testis_male_adult_37_years	chr3	33798229	33798246	33798229	-	High_confidence	16	16	48	2.145403	4.504248	chr3	33798164	33798276	LINE|L2|L2b	+	chr3	33793643	33798539	AC112220.2|ENST00000604982.2	-	33793643,33798394	33798022,33798539	0.854167
testis_male_adult_37_years	chr12	126736893	126736945	126736893	-	High_confidence	39	40	277	12.380762	6.622553	chr12	126736798	126737145	LTR|ERVL-MaLR|MLT1K	-	chr12	126732342	126736831	LINC00944|ENST00000546117.1	-	126732342,126736665	126732407,126736831	0.552347
testis_male_adult_37_years	chr5	115296245	115296280	115296253	-	High_confidence	32	35	198	8.849787	6.441269	chr5	115296013	115296236	SINE|MIR|MIRb	-	chr5	115267638	115296268	CCDC112|ENST00000395557.4	-	115267638,115268881,115269702,115271212,115275215,115275993,115276964,115279646,115284786,115295909	115267918,115269000,115269798,115271626,115275606,115276069,115277054,115279768,115284908,115296268	0.883838
testis_male_adult_37_years	chr11	98453570	98453585	98453570	+	High_confidence	6	7	13	0.581047	2.522055	chr11	98453082	98453847	LTR|ERV1|LTR1A2	-	chr11	98453594	98611943	STRG.192398.1	+	98453594,98484884,98486384,98511839,98532539,98563213,98611834	98453640,98484961,98486450,98511955,98532706,98563253,98611943	0.846154
testis_male_adult_37_years	chr8	67149294	67149349	67149294	+	RAMPAGE_only	5	5	25	1.117397	4.334963	chr8	67148873	67149394	LTR|ERVL-MaLR|MLT1F1	-	chr8	67157626	67195518	CSPP1|ENST00000521168.5	+	67157626,67158446,67158990,67161810,67163731,67164390,67172415,67175295,67177679,67179862,67190649,67195381	67157857,67158596,67159137,67161915,67163798,67164508,67172555,67175436,67177726,67179926,67190759,67195518	0.680000
testis_male_adult_37_years	chr8	144106356	144106423	144106356	+	High_confidence	2	3	25	1.117397	4.243856	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.720000
testis_male_adult_37_years	chr7	10638157	10638181	10638157	-	RAMPAGE_only	4	4	12	0.536351	3.251629	chr7	10637803	10638174	LTR|ERVL-MaLR|MLT1G1	-	chr7	10449819	10779944	AC004949.1|ENST00000634803.1	-	10449819,10561481,10779881	10452778,10561577,10779944	0.583333
testis_male_adult_37_years	chr11	131984619	131984645	131984621	-	High_confidence	8	10	25	1.117397	4.349649	chr11	131984108	131985395	LTR|ERVL-MaLR|MLT1J1-int	-	chr11	131981095	131984661	AP000844.1|ENST00000446631.2	-	131981095,131984482	131981493,131984661	0.800000
testis_male_adult_37_years	chr12	130649407	130649443	130649430	-	RAMPAGE_only	2	2	10	0.446959	3.169925	chr12	130649295	130649407	LTR|ERVL-MaLR|MLT1J	-	chr12	130456495	130633861	RIMBP2|ENST00000541840.2	-	130456495,130470692,130478911,130506647,130517827,130628321,130633804	130456700,130470743,130479016,130506770,130517917,130628456,130633861	0.500000
testis_male_adult_37_years	chr15	25115424	25115436	25115435	+	RAMPAGE_only	7	7	18	0.804526	3.219528	chr15	25115166	25115549	LTR|ERVL|MER54A	+	chr15	25094036	25120051	STRG.232734.76	+	25094036,25097320,25098716,25099144,25103858,25106163,25107471,25107909,25108997,25109197,25109554,25111764,25115298,25117409,25118267,25119064	25095828,25097439,25098828,25099278,25103970,25106294,25107588,25108038,25109103,25109403,25109715,25111894,25115656,25117515,25118382,25120051	0.888889
testis_male_adult_37_years	chr7	87860583	87860584	87860583	-	High_confidence	7	7	11	0.491655	3.121928	chr7	87860312	87860533	LINE|L1|L1MC4	-	chr7	87836167	87860598	SLC25A40|ENST00000429674.5	-	87836167,87836729,87841632,87846948,87847852,87849880,87854203,87856291,87858630,87860571	87836361,87836810,87841714,87847122,87847977,87849948,87854310,87856389,87858751,87860598	0.909091
testis_male_adult_37_years	chr13	102367356	102367399	102367356	-	High_confidence	8	8	22	0.983310	4.368523	chr13	102367044	102367593	LTR|ERVL-MaLR|MLT1F	-	chr13	102292686	102367399	FGF14-IT1|ENST00000437115.2	-	102292686,102354109,102366444,102367256	102294040,102354222,102366613,102367399	0.545455
testis_male_adult_37_years	chr21	46142401	46142421	46142420	-	High_confidence	3	3	6	0.268175	2.584963	chr21	46142201	46143045	LTR|ERV1|LTR12	-	chr21	46136261	46142669	STRG.282981.15	-	46136261,46137238,46138879	46137073,46138646,46142669	1.000000
testis_male_adult_37_years	chr13	32503853	32503880	32503879	-	RAMPAGE_only	19	22	116	5.184723	4.766464	chr13	32503763	32504021	SINE|Alu|AluJr4	+	chr13	32432786	32490140	N4BP2L2|ENST00000503296.6	-	32432786,32436360,32438651,32442387,32477886,32480589,32490091	32432972,32436405,32438737,32444126,32478048,32480637,32490140	0.931034
testis_male_adult_37_years	chr3	180868750	180868772	180868750	+	High_confidence	28	34	87	3.888543	5.876448	chr3	180868652	180869201	LTR|ERV1|HUERS-P2-int	-	chr3	180868750	180871729	STRG.67177.23	+	180868750,180870067	180868836,180871729	0.574713
testis_male_adult_37_years	chr9	35041099	35041135	35041134	+	High_confidence	12	12	35	1.564356	4.729283	chr9	35040834	35041419	LTR|ERV1|LTR10C	-	chr9	35041141	35043140	C9orf131|ENST00000534880.1	+	35041141,35042860	35041440,35043140	0.542857
testis_male_adult_37_years	chr11	21752704	21752712	21752711	+	High_confidence	4	4	8	0.357567	2.750000	chr11	21752440	21753682	LTR|ERV1|LTR12C	-	chr11	21752973	21757815	STRG.184891.1	+	21752973	21757815	0.625000
testis_male_adult_37_years	chr1	67141844	67141895	67141844	-	High_confidence	90	94	389	17.386702	6.426385	chr1	67141751	67142227	LTR|ERV1|LTR15	-	chr1	67092396	67141930	STRG.6668.7	-	67092396,67096251,67115351,67127165,67131141,67141613	67093604,67096321,67125909,67127257,67131227,67141930	0.956298
testis_male_adult_37_years	chr7	19353517	19353536	19353535	+	High_confidence	3	4	7	0.312871	2.584963	chr7	19353183	19353943	DNA|TcMar-Tigger|Tigger7	+	chr7	19353533	19578606	AC007091.1|ENST00000412563.1	+	19353533,19354739,19403700,19405331,19576286,19578528	19353641,19354885,19403763,19405370,19576418,19578606	0.571429
testis_male_adult_37_years	chr2	162353636	162353648	162353636	+	RAMPAGE_only	3	3	7	0.312871	2.807355	chr2	162353483	162354861	LINE|L1|HAL1	-	chr2	162356437	162371595	GCA|ENST00000414723.1	+	162356437,162356757,162359043,162359493,162371305	162356481,162356905,162359157,162359552,162371595	0.714286
testis_male_adult_37_years	chr1	233738931	233738938	233738931	-	High_confidence	6	7	12	0.536351	3.584963	chr1	233738886	233739304	LTR|ERV1|MER61B	+	chr1	233738358	233738935	STRG.20596.1	-	233738358	233738935	0.666667
testis_male_adult_37_years	chr15	52577530	52577552	52577530	-	RAMPAGE_only	8	8	33	1.474964	4.476410	chr15	52577477	52577611	DNA|hAT-Charlie|MER3	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	0.787879
testis_male_adult_37_years	chr8	32927967	32927984	32927976	+	High_confidence	141	165	458	20.470718	6.735851	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927933	33044802	STRG.144796.1	+	32927933,32996200,33041634,33044366	32928093,32996316,33041771,33044802	0.705240
testis_male_adult_37_years	chr18	50616773	50616777	50616776	-	High_confidence	16	16	27	1.206789	4.504706	chr18	50616446	50616969	LTR|ERVL|MLT2A2	-	chr18	50616346	50616856	STRG.261895.1	-	50616346	50616856	0.666667
testis_male_adult_37_years	chr3	16216764	16216790	16216764	+	High_confidence	12	12	52	2.324186	5.358700	chr3	16216515	16217077	LTR|ERV1|MER50	-	chr3	16216775	16230165	GALNT15|NM_001319052.1	+	16216775,16219402,16219909,16222614,16227353	16216901,16219534,16220014,16222758,16230165	0.519231
testis_male_adult_37_years	chr22	30971737	30971763	30971762	+	High_confidence	9	10	20	0.893918	3.681881	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.950000
testis_male_adult_37_years	chr12	119179270	119179297	119179296	+	High_confidence	11	11	24	1.072701	2.913977	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.916667
testis_male_adult_37_years	chr12	118126515	118126553	118126552	-	RAMPAGE_only	2	3	7	0.312871	2.807355	chr12	118126475	118126729	LTR|ERVL-MaLR|MLT1F2	-	chr12	118117666	118135948	STRG.209961.4	-	118117666,118121032,118121500,118126480,118135856	118117882,118121175,118121618,118126670,118135948	0.571429
testis_male_adult_37_years	chr7	48708498	48708521	48708509	+	High_confidence	32	32	207	9.252050	6.235093	chr7	48708556	48708983	LTR|ERVL|MER74A	+	chr7	48708344	48711429	STRG.130674.2	+	48708344,48711156	48708914,48711429	0.879227
testis_male_adult_37_years	chr2	25830887	25830901	25830887	-	High_confidence	10	10	19	0.849222	3.905765	chr2	25830642	25831037	LINE|L1|L1MD2	+	chr2	25768761	25830891	ASXL2|ENST00000497092.1	-	25768761,25771439,25799384,25806228,25830810	25768868,25771540,25799535,25806337,25830891	0.789474
testis_male_adult_37_years	chr8	17692249	17692264	17692258	-	High_confidence	17	17	53	2.368882	4.853319	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.867925
testis_male_adult_37_years	chr8	6044609	6044610	6044609	-	High_confidence	57	57	79	3.530975	4.941138	chr8	6044194	6045582	LTR|ERV1|LTR12C	-	chr8	6036833	6044627	STRG.142193.1	-	6036833,6044167	6036974,6044627	0.936709
testis_male_adult_37_years	chr4	28387839	28387875	28387839	-	RAMPAGE_only	5	5	25	1.117397	4.229871	chr4	28387647	28388142	LTR|ERVL-MaLR|MLT1D	-	chr4	28362278	28402701	AC109588.1|ENST00000507759.5	-	28362278,28370699,28393203,28394195,28402651	28362592,28370809,28393350,28394300,28402701	0.600000
testis_male_adult_37_years	chr19	45843030	45843053	45843034	-	High_confidence	69	70	208	9.296745	5.558998	chr19	45842924	45843320	LTR|ERVL-MaLR|MLT1K	+	chr19	45815895	45843037	STRG.270532.40	-	45815895,45816481,45816797,45817958,45821383,45822755,45823371,45823766,45825170,45826225,45827509,45827836,45828969,45830053,45831383,45835077,45838460,45842249,45842708	45816183,45816577,45816974,45818146,45821485,45822846,45823472,45823875,45825331,45826373,45827623,45827918,45829205,45830204,45831588,45835228,45838615,45842489,45843037	0.894231
testis_male_adult_37_years	chr9	92536651	92536704	92536703	-	High_confidence	8	11	44	1.966619	5.158596	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.909091
testis_male_adult_37_years	chr18	31556904	31556952	31556947	-	High_confidence	15	15	35	1.564356	3.947613	chr18	31556799	31557174	LTR|ERVL-MaLR|MSTB	+	chr18	31542145	31556911	DSG2-AS1|ENST00000583706.5	-	31542145,31543101,31545735,31550037,31554641,31555962	31542321,31543395,31545906,31550397,31554715,31556911	0.942857
testis_male_adult_37_years	chr8	58272100	58272115	58272100	-	High_confidence	10	10	42	1.877227	4.637801	chr8	58272087	58272283	LTR|Gypsy|LTR81A	+	chr8	58255770	58272101	AC092819.1|ENST00000519981.5	-	58255770,58257093,58257786,58259048,58259747,58260524,58271280,58271869	58256093,58257168,58257845,58259276,58260024,58260753,58271547,58272101	0.547619
testis_male_adult_37_years	chr21	17901242	17901301	17901300	+	High_confidence	7	7	22	0.983310	4.121928	chr21	17900086	17901723	LINE|L1|L1PB1	-	chr21	17901262	18267373	CHODL|ENST00000400128.5	+	17901262,17917219,18256508,18256969,18260199,18262790,18265953	17901424,17917400,18256818,18257127,18260286,18262893,18267373	0.681818
testis_male_adult_37_years	chr3	57013921	57013922	57013921	+	High_confidence	106	107	110	4.916548	5.238570	chr3	57012709	57014338	LTR|ERV1|LTR12C	+	chr3	57013940	57014416	STRG.54203.1	+	57013940	57014416	0.963636
testis_male_adult_37_years	chr3	32579156	32579178	32579177	-	RAMPAGE_only	6	6	10	0.446959	3.169925	chr3	32578580	32579842	LTR|ERV1|LTR12E	+	chr3	32525970	32570874	DYNC1LI1|NM_016141.3	-	32525970,32528445,32529539,32530283,32530460,32532985,32534510,32537010,32541036,32544875,32545848,32570345,32570624	32526908,32528601,32529660,32530328,32530520,32533097,32534646,32537104,32541206,32545106,32545965,32570419,32570874	0.500000
testis_male_adult_37_years	chr3	25852565	25852600	25852599	+	High_confidence	272	278	549	24.538044	5.523568	chr3	25851590	25853021	LTR|ERV1|LTR12C	+	chr3	25852551	26146490	STRG.51302.1	+	25852551,26137224,26143593,26145317	25853025,26137297,26143691,26146490	0.912568
testis_male_adult_37_years	chr4	165798845	165798846	165798845	-	High_confidence	26	26	27	1.206789	4.315824	chr4	165798534	165799941	LTR|ERV1|LTR12C	-	chr4	165798336	165798982	STRG.85533.1	-	165798336	165798982	0.925926
testis_male_adult_37_years	chr12	883795	883830	883829	+	RAMPAGE_only	5	6	21	0.938614	3.820889	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	752922	911451	WNK1|ENST00000530271.6	+	752922,813641,827041,830002,857160,859244,861012,862082,867865,871264,878211,879572,880720,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,901560,904452,907846,908474	754324,813814,827262,830160,857249,859464,861343,862270,869104,871348,878361,880031,880999,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,901632,904494,908034,911451	1.000000
testis_male_adult_37_years	chr17	55458493	55458529	55458528	-	High_confidence	10	10	45	2.011315	4.804058	chr17	55458350	55459213	LTR|ERV1|LTR1A2	+	chr17	55454045	55458450	SMIM36|ENST00000572159.1	-	55454045,55458224	55454082,55458450	0.533333
testis_male_adult_37_years	chr6	77369117	77369167	77369158	-	High_confidence	28	32	206	9.207354	6.689217	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77146897	77369171	STRG.115408.2	-	77146897,77151818,77271339,77273026,77350621,77368885	77151280,77151974,77271493,77273307,77350734,77369171	0.873786
testis_male_adult_37_years	chr12	14665626	14665645	14665635	+	High_confidence	63	73	184	8.224044	5.501555	chr12	14665652	14665749	LINE|L2|L2a	+	chr12	14665654	14757963	AC010168.1|ENST00000501178.2	+	14665654,14665858,14672265,14718034,14757594	14665697,14666013,14672314,14718075,14757963	0.896739
testis_male_adult_37_years	chr2	203276364	203276365	203276364	+	RAMPAGE_only	5	5	8	0.357567	2.521641	chr2	203275773	203277066	LINE|L2|L2a	-	chr2	203239026	203298286	CYP20A1|ENST00000431118.5	+	203239026,203245845,203251966,203266513,203272669,203278572,203280058,203285611,203289764,203292261,203296473,203296757	203239134,203245895,203252109,203266681,203272748,203278688,203280113,203285732,203289876,203292326,203296563,203298286	0.500000
testis_male_adult_37_years	chr1	6981026	6981039	6981038	+	RAMPAGE_only	3	3	8	0.357567	2.807355	chr1	6980966	6981263	DNA|TcMar-Tigger|MER46C	-	chr1	6825109	7769706	STRG.798.1	+	6825109,7091303,7249490,7467829,7640399,7661725,7663352,7670910,7677598,7732447,7736343,7736930,7737254,7737958,7744834,7745844,7747709,7751198,7752458,7766458	6825210,7091371,7249626,7467901,7640553,7661866,7665199,7671037,7677733,7732599,7736540,7737009,7737570,7738482,7745022,7746091,7747781,7751392,7752533,7769706	0.625000
testis_male_adult_37_years	chr3	11604396	11604460	11604455	-	High_confidence	253	259	592	26.459968	5.913333	chr3	11604225	11604413	SINE|MIR|MIR3	-	chr3	11556066	11604581	VGLL4|NM_001284391.1	-	11556066,11559331,11564796,11601832,11604323	11558827,11559455,11565019,11602022,11604581	0.986486
testis_male_adult_37_years	chr18	72209145	72209171	72209145	-	High_confidence	2	3	8	0.357567	2.750000	chr18	72208942	72210364	LTR|ERV1|LTR12C	+	chr18	71936960	72209662	STRG.264244.1	-	71936960,71944478,72208931	71937406,71944602,72209662	0.500000
testis_male_adult_37_years	chr2	219279063	219279073	219279068	+	High_confidence	3	3	9	0.402263	2.750000	chr2	219278766	219279080	LINE|L2|L2c	-	chr2	219279266	219286900	DNAJB2|ENST00000336576.9	+	219279266,219279797,219280577,219281717,219281938,219282836,219283132,219283418,219284631	219279518,219279898,219280687,219281771,219282061,219282929,219283235,219283489,219286900	0.666667
testis_male_adult_37_years	chr2	222599992	222600015	222599992	-	RAMPAGE_only	2	2	12	0.536351	3.418296	chr2	222599989	222600062	LINE|RTE-BovB|MamRTE1	-	chr2	222570535	222656337	FARSB|ENST00000281828.6	-	222570535,222599927,222613810,222619644,222623649,222624271,222624713,222628836,222630112,222631603,222633198,222634390,222639579,222640861,222642850,222648739,222656015	222572022,222600083,222613928,222619737,222623730,222624479,222624775,222628888,222630174,222631674,222633307,222634541,222639695,222640931,222643005,222648795,222656337	0.750000
testis_male_adult_37_years	chr4	126488253	126488261	126488260	-	High_confidence	5	6	16	0.715134	3.506891	chr4	126488254	126489184	LTR|ERVL|ERVL-E-int	-	chr4	126453278	126488249	STRG.81535.1	-	126453278,126463029,126464234,126464929,126470867,126488193	126453327,126463114,126464302,126465142,126470961,126488249	0.562500
testis_male_adult_37_years	chr16	17392241	17392251	17392250	-	RAMPAGE_only	8	9	17	0.759830	3.750000	chr16	17392055	17392565	LINE|L2|L2b	+	chr16	17101768	17470881	XYLT1|ENST00000261381.6	-	17101768,17117645,17127665,17134472,17138354,17141152,17158828,17198211,17200481,17258987,17358011,17470433	17109017,17117979,17127861,17134735,17138531,17141369,17158909,17198414,17200654,17259498,17358050,17470881	0.588235
testis_male_adult_37_years	chr2	44167369	44167427	44167426	-	High_confidence	34	34	148	6.614992	5.404680	chr2	44167377	44167621	LINE|L2|L2a	+	chr2	44166038	44167181	STRG.27975.1	-	44166038	44167181	0.878378
testis_male_adult_37_years	chr12	31117685	31117864	31117704	-	High_confidence	10	11	94	4.201414	4.839478	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.893617
testis_male_adult_37_years	chr17	50547765	50547767	50547765	+	High_confidence	5	6	9	0.402263	3.000000	chr17	50547441	50547788	LINE|L2|L2c	+	chr17	50547998	50555852	SPATA20|ENST00000511937.5	+	50547998,50548282,50548553,50548809,50549042,50549285,50549984,50550207,50550535,50550707,50550997,50551510,50551968,50554250,50555231,50555491	50548161,50548453,50548618,50548964,50549186,50549487,50550115,50550312,50550610,50550917,50551222,50551679,50552180,50554450,50555312,50555852	0.777778
testis_male_adult_37_years	chr17	47056838	47056839	47056838	-	RAMPAGE_only	184	185	197	8.805091	5.364872	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.898477
testis_male_adult_37_years	chr3	7342722	7342723	7342722	+	RAMPAGE_only	5	6	8	0.357567	2.521641	chr3	7342584	7342771	DNA|hAT-Charlie|MER5A	-	chr3	7298682	7686427	GRM7|ENST00000402647.6	+	7298682,7306497,7415022,7452606,7461582,7578421,7680048,7686356	7298825,7306652,7415163,7452807,7461722,7579357,7680295,7686427	0.625000
testis_male_adult_37_years	chr8	124940323	124940345	124940344	+	RAMPAGE_only	4	4	15	0.670438	3.139572	chr8	124940103	124940620	LTR|ERVL|LTR86A1	-	chr8	124942007	124951095	LINC00964|NR_027321.1	+	124942007,124943269,124946054,124950815	124942724,124945746,124946159,124951095	0.666667
testis_male_adult_37_years	chr14	106846257	106846267	106846265	-	High_confidence	4	7	10	0.446959	3.169925	chr14	106845982	106849095	LINE|L1|L1PBb	-	chr14	106809197	106846280	STRG.231952.2	-	106809197,106845802	106810746,106846280	0.800000
testis_male_adult_37_years	chr16	16104552	16104587	16104586	+	RAMPAGE_only	10	11	16	0.715134	3.189898	chr16	16103819	16105191	LTR|ERV1|LTR12C	-	chr16	16102682	16115069	ABCC1|ENST00000572053.5	+	16102682,16105399,16106737,16111374,16114765	16102717,16105460,16106873,16111582,16115069	0.625000
testis_male_adult_37_years	chr5	133048177	133048182	133048177	+	RAMPAGE_only	41	56	79	3.530975	5.275724	chr5	133047373	133048506	LTR|ERV1|LTR12D	+	chr5	133042407	133048813	STRG.101309.1	+	133042407,133048255	133042535,133048813	0.924051
testis_male_adult_37_years	chr9	107505061	107505084	107505083	+	RAMPAGE_only	2	2	7	0.312871	2.584963	chr9	107504976	107505107	DNA|DNA|UCON78	-	chr9	107514566	107515168	STRG.165960.1	+	107514566	107515168	0.857143
testis_male_adult_37_years	chr1	21814383	21814391	21814383	+	RAMPAGE_only	4	4	9	0.402263	2.725481	chr1	21814218	21814405	SINE|MIR|MIR	-	chr1	21812362	21823963	LDLRAD2|ENST00000543870.1	+	21812362,21814397,21815942,21821449,21822201,21823909	21812536,21814823,21816074,21821611,21822433,21823963	0.888889
testis_male_adult_37_years	chr5	27120688	27120689	27120688	+	High_confidence	228	228	234	10.458839	4.339758	chr5	27119715	27121105	LTR|ERV1|LTR12C	+	chr5	27120879	27121769	STRG.91418.1	+	27120879	27121769	0.927350
testis_male_adult_37_years	chr5	132927591	132927595	132927594	-	High_confidence	17	17	35	1.564356	4.066677	chr5	132927548	132927776	SINE|MIR|MIR	-	chr5	132898282	132927562	AFF4|ENST00000477369.5	-	132898282,132899103,132899586,132902441,132904367,132927120	132898392,132899141,132899641,132902487,132904404,132927562	0.914286
testis_male_adult_37_years	chr16	81037186	81037201	81037197	+	High_confidence	18	18	53	2.368882	4.825252	chr16	81037175	81037367	LINE|RTE-X|L4_B_Mam	-	chr16	81037207	81042450	ATMIN|ENST00000565237.1	+	81037207,81041355,81042280	81037498,81041481,81042450	0.811321
testis_male_adult_37_years	chr2	112809641	112809680	112809675	+	High_confidence	17	17	54	2.413578	5.200440	chr2	112809518	112809872	LTR|ERVL-MaLR|MSTA	+	chr2	112809556	112817643	STRG.34771.2	+	112809556	112817643	0.629630
testis_male_adult_37_years	chr3	179262570	179262571	179262570	-	High_confidence	52	52	58	2.592362	3.916558	chr3	179262286	179263543	LTR|ERV1|LTR12C	-	chr3	179262236	179262558	STRG.66775.1	-	179262236	179262558	0.775862
testis_male_adult_37_years	chr17	40648567	40648579	40648567	-	High_confidence	3	3	9	0.402263	2.750000	chr17	40648546	40648925	LINE|L2|L2b	+	chr17	40625002	40648654	SMARCE1|ENST00000643318.1	-	40625002,40630713,40631591,40632194,40635930,40636394,40637491,40645795,40647772	40628993,40630924,40631693,40632367,40636102,40636526,40637572,40645847,40648654	0.777778
testis_male_adult_37_years	chr6	146770455	146770481	146770470	+	High_confidence	82	86	248	11.084581	6.941161	chr6	146770491	146770584	LINE|L2|L2c	+	chr6	146770438	146801254	ADGB|ENST00000326916.12	+	146770438,146782019,146784617,146785609,146788388,146801182	146770609,146782192,146784794,146785712,146788610,146801254	0.947581
testis_male_adult_37_years	chr14	30577737	30577761	30577760	+	High_confidence	139	150	246	10.995189	6.261533	chr14	30577335	30577821	LTR|ERVL-MaLR|MLT1F1	-	chr14	30577760	30613966	STRG.223408.4	+	30577760,30581075,30586717,30589382,30592322,30593473,30597419,30598482,30601769,30601998,30605504,30607887	30580947,30581116,30586815,30589484,30592447,30593639,30597526,30598599,30601894,30602131,30605812,30613966	0.857724
testis_male_adult_37_years	chr6	155997416	155997447	155997427	+	High_confidence	28	28	157	7.017255	6.273715	chr6	155997396	155997692	LINE|L1|HAL1	+	chr6	155997450	155997755	STRG.123420.1	+	155997450	155997755	0.668790
testis_male_adult_37_years	chr1	4412056	4412096	4412095	+	High_confidence	7	8	17	0.759830	3.625000	chr1	4411693	4412409	LTR|ERV1|MER50	-	chr1	4412050	4424684	LOC284661|NR_027088.1	+	4412050,4415552,4416311,4422759,4423347,4423993	4412632,4415587,4416548,4423187,4423448,4424684	0.941176
testis_male_adult_37_years	chr12	121375388	121375425	121375424	+	High_confidence	81	86	223	9.967184	5.286350	chr12	121374282	121375813	LTR|ERV1|LTR12C	+	chr12	121375363	121380264	STRG.210630.1	+	121375363	121380264	0.959641
testis_male_adult_37_years	chr7	53811930	53811957	53811930	-	High_confidence	132	132	385	17.207918	6.022538	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.888312
testis_male_adult_37_years	chr7	5794470	5794471	5794470	+	High_confidence	98	109	131	5.855162	5.082532	chr7	5793408	5794887	LTR|ERV1|LTR12C	+	chr7	5794443	5840042	STRG.125798.3	+	5794443,5816197,5831180,5833526,5839948	5794887,5816796,5831283,5833568,5840042	0.534351
testis_male_adult_37_years	chrX	51629439	51629478	51629448	+	High_confidence	4	5	27	1.206789	4.384517	chrX	51629316	51629539	LTR|ERV1|MER66C	-	chrX	51629445	51642754	STRG.291574.1	+	51629445,51638177,51639779,51641806	51629566,51638287,51639901,51642754	0.555556
testis_male_adult_37_years	chr7	104895996	104896020	104896019	-	High_confidence	10	13	26	1.162093	4.136842	chr7	104895843	104896218	LTR|ERVL-MaLR|MLT1B	-	chr7	104894331	104896359	STRG.135706.1	-	104894331,104896339	104896064,104896359	0.769231
testis_male_adult_37_years	chr13	21138407	21138431	21138423	+	High_confidence	10	12	43	1.921923	3.933783	chr13	21138310	21138948	LINE|L1|L1ME3B	-	chr13	21138417	21147319	STRG.211935.1	+	21138417,21140276,21140885,21146804,21147185	21138457,21140681,21140995,21146927,21147319	0.906977
testis_male_adult_37_years	chr5	32390954	32390978	32390966	-	RAMPAGE_only	10	14	44	1.966619	4.845351	chr5	32390905	32391003	DNA|hAT-Charlie|Charlie8	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.659091
testis_male_adult_37_years	chr6	102910997	102911035	102911034	+	High_confidence	3	3	11	0.491655	3.121928	chr6	102909877	102911203	LTR|ERV1|LTR12C	-	chr6	102910651	102916521	STRG.117694.1	+	102910651	102916521	0.545455
testis_male_adult_37_years	chr3	9014066	9014109	9014097	+	High_confidence	5	5	26	1.162093	2.823185	chr3	9013910	9014194	LTR|ERVL-MaLR|MLT1K	+	chr3	9014122	9015979	SRGAP3-AS1|ENST00000414633.1	+	9014122,9015720	9014291,9015979	1.000000
testis_male_adult_37_years	chr13	88345528	88345550	88345534	+	High_confidence	8	9	31	1.385573	4.260333	chr13	88344729	88345965	LTR|ERV1|LTR12E	-	chr13	88345527	88446217	STRG.219046.1	+	88345527,88419065,88445803	88346014,88419256,88446217	0.645161
testis_male_adult_37_years	chr13	27442314	27442355	27442331	-	RAMPAGE_only	20	20	74	3.307496	5.384050	chr13	27442008	27442978	LINE|L2|L2a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.500000
testis_male_adult_37_years	chr16	75248150	75248151	75248150	-	High_confidence	7	7	10	0.446959	2.947703	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.800000
testis_male_adult_37_years	chr3	154889608	154889639	154889638	+	RAMPAGE_only	7	8	19	0.849222	3.836592	chr3	154888320	154889804	LTR|ERV1|LTR12C	-	chr3	154891382	154892134	STRG.63865.1	+	154891382	154892134	0.578947
testis_male_adult_37_years	chr19	34676037	34676038	34676037	-	High_confidence	150	150	189	8.447524	5.991080	chr19	34675656	34676296	LTR|ERV1|LTR12_	-	chr19	34576732	34677031	SCGB1B2P|NR_027620.3	-	34576732,34577265,34577542,34675629	34576994,34577456,34577732,34677031	0.862434
testis_male_adult_37_years	chr1	87158893	87158918	87158917	+	RAMPAGE_only	3	3	9	0.402263	2.947703	chr1	87158786	87158963	SINE|MIR|MIR	-	chr1	87129773	87169198	LINC01140|ENST00000490006.6	+	87129773,87133613,87168135	87129994,87133718,87169198	0.777778
testis_male_adult_37_years	chr2	208615251	208615275	208615251	+	RAMPAGE_only	4	4	16	0.715134	3.375000	chr2	208615119	208615478	LTR|ERVL-MaLR|THE1B	+	chr2	208542641	208825587	LOC101927960|NR_136588.1	+	208542641,208572012,208656825,208819551,208824194,208825398	208542991,208572167,208656989,208819655,208824350,208825587	0.812500
testis_male_adult_37_years	chr13	100976527	100976528	100976527	+	High_confidence	141	142	156	6.972559	5.192789	chr13	100975513	100977042	LTR|ERV1|LTR12C	+	chr13	100976824	100977308	STRG.220246.1	+	100976824	100977308	0.910256
testis_male_adult_37_years	chr12	84154436	84154457	84154436	+	High_confidence	10	10	33	1.474964	4.011639	chr12	84154403	84155685	LTR|ERV1|LTR12C	-	chr12	84154444	84154912	STRG.206178.1	+	84154444	84154912	0.848485
testis_male_adult_37_years	chr4	13589096	13589097	13589096	-	RAMPAGE_only	24	24	28	1.251485	3.931209	chr4	13588885	13589056	SINE|MIR|MIRb	-	chr4	13582229	13593520	BOD1L1|ENST00000511119.1	-	13582229,13582651,13586395,13587698,13588721,13590385,13591922	13582310,13582736,13586475,13587771,13588792,13590446,13593520	0.607143
testis_male_adult_37_years	chr12	22859160	22859176	22859175	+	High_confidence	13	13	28	1.251485	4.521641	chr12	22858573	22859552	LINE|L2|L2a	-	chr12	22859474	22971008	AC084816.1|ENST00000538317.5	+	22859474,22861068,22887963,22969362,22970835	22859545,22861224,22888044,22969465,22971008	0.821429
testis_male_adult_37_years	chr18	64671604	64671629	64671628	+	High_confidence	4	4	8	0.357567	3.000000	chr18	64671270	64671969	LTR|ERV1|LTR12	+	chr18	64671648	64672072	STRG.263273.1	+	64671648	64672072	0.875000
testis_male_adult_37_years	chr8	10529388	10529400	10529388	+	High_confidence	7	7	21	0.938614	3.826875	chr8	10529358	10529418	SINE|MIR|MIRb	+	chr8	10529411	10545198	PRSS55|ENST00000518641.1	+	10529411,10531294,10532905,10540257,10544971	10529699,10531712,10533048,10541555,10545198	0.714286
testis_male_adult_37_years	chr1	62194381	62194414	62194381	+	High_confidence	2	2	7	0.312871	2.807355	chr1	62194197	62194528	LINE|L2|L2a	-	chr1	62194801	62212328	L1TD1|NM_001164835.1	+	62194801,62196434,62203446,62206518,62209782	62194921,62196528,62203557,62207636,62212328	0.857143
testis_male_adult_37_years	chr12	7751619	7751620	7751619	-	High_confidence	57	71	74	3.307496	5.645882	chr12	7751374	7752625	LTR|ERV1|LTR12E	-	chr12	7729414	7751605	CLEC4C|ENST00000354629.9	-	7729414,7730796,7737428,7741420,7747317,7749112,7751429	7729740,7730912,7737574,7741531,7747481,7749199,7751605	0.554054
testis_male_adult_37_years	chr20	33662212	33662243	33662212	-	High_confidence	7	7	16	0.715134	3.773557	chr20	33662113	33662220	SINE|MIR|MIRb	-	chr20	33657729	33662237	NECAB3|ENST00000478237.5	-	33657729,33657941,33658476,33658721,33659496,33659652,33659884,33660258,33662211	33657857,33658033,33658554,33658834,33659550,33659732,33660003,33660395,33662237	0.750000
testis_male_adult_37_years	chr1	155478036	155478062	155478036	-	RAMPAGE_only	7	10	19	0.849222	3.681881	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
testis_male_adult_37_years	chr13	43180301	43180319	43180318	+	High_confidence	3	4	6	0.268175	2.584963	chr13	43180014	43180534	LTR|ERV1|LTR12	+	chr13	43180540	43182056	STRG.213677.1	+	43180540	43182056	0.833333
testis_male_adult_37_years	chr2	26412883	26412897	26412883	+	RAMPAGE_only	2	2	6	0.268175	2.584963	chr2	26412771	26413081	SINE|Alu|AluYk3	-	chr2	26421154	26430798	DRC1|ENST00000497651.1	+	26421154,26424270,26429627,26430785	26421400,26424454,26429765,26430798	0.500000
testis_male_adult_37_years	chr16	20676155	20676202	20676201	-	High_confidence	29	30	97	4.335501	6.138522	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.804124
testis_male_adult_37_years	chr5	157142575	157142612	157142575	-	High_confidence	4	4	20	0.893918	3.684184	chr5	157142397	157142563	SINE|MIR|MIR3	-	chr5	157138439	157142775	MED7|NM_001100816.1	-	157138439,157142400	157139448,157142775	1.000000
testis_male_adult_37_years	chr4	26064336	26064362	26064361	+	RAMPAGE_only	3	3	7	0.312871	2.807355	chr4	26063111	26064545	LTR|ERV1|LTR12C	-	chr4	26070753	26104258	LINC02357|ENST00000637313.1	+	26070753,26080449,26104044	26072020,26080590,26104258	0.571429
testis_male_adult_37_years	chr4	152412488	152412529	152412528	-	High_confidence	12	13	34	1.519660	4.801970	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.970588
testis_male_adult_37_years	chr2	192894064	192894096	192894070	+	High_confidence	2	2	10	0.446959	2.947703	chr2	192893452	192894950	Retroposon|SVA|SVA_B	+	chr2	192893990	192918909	STRG.42568.1	+	192893990,192916830,192918635	192894041,192916954,192918909	0.500000
testis_male_adult_37_years	chr3	87376033	87376034	87376033	+	High_confidence	97	98	111	4.961244	4.866171	chr3	87375146	87376468	LTR|ERV1|LTR12C	+	chr3	87376018	87376638	STRG.57349.1	+	87376018	87376638	0.981982
testis_male_adult_37_years	chr19	40280802	40280832	40280831	-	High_confidence	38	38	75	3.352192	4.035526	chr19	40280545	40281038	LINE|L2|L2a	+	chr19	40242039	40280832	AKT2|ENST00000486368.6	-	40242039,40242533,40255157,40256925,40265221,40280781	40242069,40242687,40255269,40257054,40265351,40280832	0.853333
testis_male_adult_37_years	chr2	7288813	7288833	7288832	+	High_confidence	4	4	9	0.402263	2.725481	chr2	7288706	7289096	LTR|ERVL-MaLR|MLT1B	-	chr2	7288786	7289358	STRG.23680.1	+	7288786	7289358	0.888889
testis_male_adult_37_years	chr8	98176472	98176479	98176478	+	High_confidence	27	29	70	3.128712	4.438113	chr8	98176430	98176954	LTR|ERVL-MaLR|MLT1F	+	chr8	98176365	98180613	STRG.151994.1	+	98176365,98179821,98180593	98176908,98180044,98180613	0.914286
testis_male_adult_37_years	chr16	1957750	1957751	1957750	-	High_confidence	62	62	70	3.128712	4.302986	chr16	1957336	1958737	LTR|ERV1|LTR12C	-	chr16	1956563	1957738	STRG.241871.1	-	1956563	1957738	0.914286
testis_male_adult_37_years	chr5	149928598	149928605	149928598	-	RAMPAGE_only	3	3	7	0.312871	2.584963	chr5	149928535	149928728	DNA|TcMar-Tigger|Tigger3b	-	chr5	149857954	149944793	PDE6A|ENST00000617647.4	-	149857954,149859891,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647,149907311,149914942,149921634,149931027,149944199	149858530,149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149903695,149907378,149915007,149921709,149931168,149944793	0.857143
testis_male_adult_37_years	chr12	126772250	126772264	126772250	-	High_confidence	3	3	9	0.402263	2.725481	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126752340	126772262	LINC00944|ENST00000536517.1	-	126752340,126760931,126772078	126752451,126761057,126772262	0.666667
testis_male_adult_37_years	chr1	37807669	37807715	37807669	-	High_confidence	2	2	12	0.536351	3.277613	chr1	37807628	37807725	SINE|MIR|MIR1_Amn	+	chr1	37802943	37808185	YRDC|ENST00000373044.2	-	37802943,37804301,37806856,37807100,37807791	37803997,37804444,37806976,37807215,37808185	0.833333
testis_male_adult_37_years	chr6	84967818	84967819	84967818	-	High_confidence	7	7	10	0.446959	3.169925	chr6	84967056	84968069	LTR|ERV1|HERVI-int	-	chr6	84845366	84967805	STRG.116031.1	-	84845366,84965298,84967764	84845457,84965503,84967805	0.800000
testis_male_adult_37_years	chr15	91649113	91649121	91649120	-	High_confidence	5	5	10	0.446959	2.947703	chr15	91648975	91649445	LTR|ERVL-MaLR|MLT1N2	+	chr15	91643016	91649114	AC107958.2|ENST00000555396.1	-	91643016,91644737,91649045	91643398,91644878,91649114	0.700000
testis_male_adult_37_years	chr11	78473000	78473039	78473028	+	High_confidence	4	4	10	0.446959	3.121928	chr11	78473019	78473178	SINE|Alu|AluJo	+	chr11	78473201	78497188	STRG.189861.1	+	78473201,78496935	78473296,78497188	0.800000
testis_male_adult_37_years	chr7	115790049	115790087	115790062	+	High_confidence	2	2	12	0.536351	3.418296	chr7	115789220	115790263	LTR|ERV1|LTR12D	-	chr7	115789728	115791049	AC093714.2|ENST00000489626.1	+	115789728,115790428,115791017	115790266,115790621,115791049	0.833333
testis_male_adult_37_years	chr3	45030135	45030148	45030147	+	High_confidence	59	60	146	6.525600	5.833570	chr3	45029937	45030150	SINE|MIR|MIRb	+	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	0.952055
testis_male_adult_37_years	chr11	110237925	110237948	110237947	-	High_confidence	5	5	10	0.446959	2.725481	chr11	110237789	110237918	SINE|Alu|AluJr	-	chr11	110229449	110237857	RDX|ENST00000532461.5	-	110229449,110233236,110236098,110237491	110232033,110233479,110236191,110237857	0.900000
testis_male_adult_37_years	chr5	173614822	173614834	173614833	-	RAMPAGE_only	41	41	64	2.860537	5.215825	chr5	173614782	173614871	DNA|TcMar-Tigger|MER44B	-	chr5	173607798	173616358	BOD1|ENST00000477985.1	-	173607798,173609237,173616199	173608292,173609434,173616358	0.750000
testis_male_adult_37_years	chr5	100354592	100354670	100354669	-	High_confidence	13	13	44	1.966619	4.188610	chr5	100354438	100355430	LTR|ERV1|LTR12D	+	chr5	100246821	100355432	STRG.97892.4	-	100246821,100248206,100308871,100354406	100247759,100248337,100308934,100355432	0.750000
testis_male_adult_37_years	chr12	53388667	53388693	53388687	+	RAMPAGE_only	14	15	59	2.637058	4.706642	chr12	53388697	53388988	SINE|Alu|AluJb	+	chr12	53380643	53416446	SP1|NM_003109.1	+	53380643,53381658,53382109,53406584,53409361,53410926	53380684,53381813,53383622,53406753,53409561,53416446	0.932203
testis_male_adult_37_years	chr11	9993966	9993968	9993966	-	High_confidence	2	4	7	0.312871	2.584963	chr11	9993915	9994007	DNA|hAT-Ac|OldhAT1	+	chr11	9853706	9993104	SBF2|ENST00000420722.2	-	9853706,9856457,9858225,9895942,9961956,9963772,9968340,9989496,9992989	9853712,9856720,9858396,9896011,9962106,9963882,9968545,9989595,9993104	0.714286
testis_male_adult_37_years	chr2	156533987	156534000	156533987	+	RAMPAGE_only	16	16	30	1.340877	4.506891	chr2	156533738	156534506	LTR|ERV1|LTR1F1	-	chr2	156473571	156583058	GPD2|ENST00000409674.5	+	156473571,156476097,156496043,156510795,156512219,156513332,156549607,156550601,156557388,156568824,156569362,156570086,156571133,156578888,156579085,156579689,156582792	156473636,156476207,156496215,156510920,156512317,156513496,156549772,156550746,156557582,156568959,156569538,156570218,156571292,156579001,156579164,156579788,156583058	0.800000
testis_male_adult_37_years	chr6	7442307	7442322	7442321	+	High_confidence	10	10	21	0.938614	3.689704	chr6	7441101	7442714	LTR|ERV1|LTR12C	+	chr6	7441815	7453160	STRG.107591.2	+	7441815,7452310	7442356,7453160	0.952381
testis_male_adult_37_years	chr6	108960926	108960937	108960926	+	RAMPAGE_only	5	5	11	0.491655	2.921928	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108959459	108965117	ARMC2|ENST00000481850.1	+	108959459,108961571,108962013,108964179,108964979	108959519,108961694,108962127,108964312,108965117	0.727273
testis_male_adult_37_years	chr17	29707037	29707069	29707068	-	RAMPAGE_only	3	3	8	0.357567	2.750000	chr17	29706871	29707168	SINE|Alu|AluYi6	+	chr17	29673839	29761390	SSH2|ENST00000324677.12	-	29673839,29676819,29677672,29684562,29695458,29702958,29761149	29674159,29676885,29677741,29684684,29695523,29703062,29761390	0.625000
testis_male_adult_37_years	chrX	105116075	105116114	105116113	+	RAMPAGE_only	14	15	45	2.011315	4.586763	chrX	105115024	105116272	LTR|ERV1|LTR12C	-	chrX	105195468	105749060	STRG.294801.1	+	105195468,105233817,105267387,105484312,105717366,105740545,105748959	105195748,105234004,105267541,105484387,105717496,105740691,105749060	0.866667
testis_male_adult_37_years	chr16	55671670	55671697	55671688	+	High_confidence	5	9	24	1.072701	4.053509	chr16	55671454	55671819	DNA|hAT-Charlie|Charlie3	+	chr16	55671670	55703788	SLC6A2|NM_001172502.1	+	55671670,55685142,55691917,55694009,55695277,55696224,55697896,55698468,55699553,55700138,55701862,55702322	55672175,55685281,55692052,55694113,55695402,55696337,55698025,55698568,55699654,55700306,55701934,55703788	0.958333
testis_male_adult_37_years	chr6	14003210	14003211	14003210	+	High_confidence	16	16	17	0.759830	3.375000	chr6	14002253	14003643	LTR|ERV1|LTR12C	+	chr6	14003223	14004784	STRG.108516.1	+	14003223,14003677	14003651,14004784	0.764706
testis_male_adult_37_years	chr10	61867914	61867947	61867946	-	High_confidence	16	19	52	2.324186	5.319484	chr10	61867461	61869125	LTR|ERV1|LTR12C	+	chr10	61714704	61868228	STRG.174705.1	-	61714704,61794350,61863460,61867859	61716016,61794465,61863561,61868228	0.538462
testis_male_adult_37_years	chr1	217737843	217737857	217737843	+	High_confidence	8	8	15	0.670438	3.664498	chr1	217737827	217738125	SINE|Alu|AluSx	-	chr1	217737843	217801768	SPATA17|ENST00000492747.2	+	217737843,217739472,217741974,217774333,217782173,217801717	217737967,217739589,217742098,217774537,217782322,217801768	0.800000
testis_male_adult_37_years	chr2	69439600	69439617	69439600	-	High_confidence	8	10	22	0.983310	4.070656	chr2	69439251	69440147	LTR|ERV1|LTR12C	-	chr2	69438924	69439592	STRG.31213.1	-	69438924	69439592	0.909091
testis_male_adult_37_years	chrX	5726116	5726148	5726116	-	RAMPAGE_only	3	3	9	0.402263	2.750000	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5705723	5720019	STRG.287327.1	-	5705723,5719536	5705784,5720019	0.666667
testis_male_adult_37_years	chr7	11567325	11567346	11567325	-	RAMPAGE_only	2	2	7	0.312871	2.521641	chr7	11567110	11567490	LTR|ERVL-MaLR|THE1C	-	chr7	11446301	11543059	THSD7A|ENST00000497575.1	-	11446301,11447229,11541418,11542961	11446324,11447424,11541631,11543059	1.000000
testis_male_adult_37_years	chr7	117287076	117287099	117287098	+	RAMPAGE_only	6	7	11	0.491655	2.646439	chr7	117287066	117287364	SINE|Alu|AluSc	+	chr7	117300860	117322236	AC002465.1|ENST00000436097.1	+	117300860,117322057	117301030,117322236	0.727273
testis_male_adult_37_years	chr12	10368309	10368392	10368310	+	RAMPAGE_only	36	43	103	4.603677	6.065404	chr12	10367931	10368398	LTR|ERV1|LTR15	+	chr12	10363460	10384063	STRG.198474.2	+	10363460,10370378,10373040,10374034,10379701	10364033,10370452,10373137,10374136,10384063	0.592233
testis_male_adult_37_years	chr5	96619505	96619506	96619505	+	High_confidence	67	67	78	3.486280	4.909463	chr5	96618337	96619819	LTR|ERV1|LTR12C	+	chr5	96619516	96620027	STRG.97557.1	+	96619516	96620027	0.910256
testis_male_adult_37_years	chr1	37519041	37519042	37519041	+	High_confidence	143	143	147	6.570296	5.696233	chr1	37518068	37519559	LTR|ERV1|LTR12C	+	chr1	37519049	37522964	STRG.3460.1	+	37519049,37522197	37519574,37522964	0.836735
testis_male_adult_37_years	chr13	24284218	24284219	24284218	+	RAMPAGE_only	10	12	13	0.581047	3.084963	chr13	24284180	24284220	LINE|CR1|L3	+	chr13	24270840	24303121	STRG.212365.3	+	24270840,24278613,24284134,24286213,24286764,24288998,24290651,24294738,24297362,24300400,24302597	24270912,24280154,24284271,24286393,24286950,24289178,24290884,24294868,24297735,24300475,24303121	0.923077
testis_male_adult_37_years	chr19	52093874	52093883	52093874	-	High_confidence	3	3	8	0.357567	2.750000	chr19	52093852	52094032	SINE|Alu|AluJb	+	chr19	52064465	52094105	ZNF841|ENST00000594295.5	-	52064465,52076043,52076957,52084786,52088936,52093845	52067610,52076172,52077084,52084878,52089002,52094105	0.875000
testis_male_adult_37_years	chr11	77571438	77571452	77571438	+	High_confidence	4	4	17	0.759830	3.690117	chr11	77571455	77571917	LTR|ERV1|HERV3-int	+	chr11	77571166	77575986	STRG.190096.1	+	77571166,77571514,77574210	77571310,77571685,77575986	1.000000
testis_male_adult_37_years	chr9	113444722	113444742	113444741	+	High_confidence	7	7	18	0.804526	3.852169	chr9	113444680	113444776	SINE|MIR|MIRb	-	chr9	113444730	113597738	RGS3|ENST00000374140.6	+	113444730,113460244,113461706,113462020,113479490,113483058,113484137,113485624,113495785,113497313,113498024,113505441,113506387,113507286,113508540,113514457,113517540,113522929,113529220,113536795,113583449,113591332,113594429,113594918,113595598,113596767	113444927,113460336,113461860,113462201,113479541,113483117,113484232,113485693,113495846,113497404,113498080,113505523,113506493,113507638,113508580,113514654,113517624,113523041,113529264,113536918,113584427,113591397,113594531,113594980,113595765,113597738	0.833333
testis_male_adult_37_years	chr22	31532354	31532385	31532354	+	RAMPAGE_only	3	3	10	0.446959	3.169925	chr22	31532340	31532413	LINE|L2|L2b	-	chr22	31528819	31550677	SFI1|ENST00000486708.1	+	31528819,31531057,31546860,31550253	31528863,31531129,31546971,31550677	0.600000
testis_male_adult_37_years	chr18	48692570	48692586	48692570	+	High_confidence	2	2	6	0.268175	2.584963	chr18	48692552	48692713	DNA|hAT-Charlie|MER5A1	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	1.000000
testis_male_adult_37_years	chr7	92244911	92244950	92244949	-	High_confidence	8	8	17	0.759830	3.577820	chr7	92244870	92245026	DNA|hAT-Charlie|MER20B	+	chr7	92200357	92245795	KRIT1|ENST00000412043.6	-	92200357,92201306,92213194,92213891,92214610,92221901,92222821,92225719,92226525,92234448,92234807,92235402,92236412,92237666,92240992,92242033,92244001,92244901,92245426	92200804,92201423,92213401,92213979,92214777,92222053,92222978,92225827,92226682,92234592,92234923,92235646,92236542,92237759,92241152,92242137,92244149,92245171,92245795	0.705882
testis_male_adult_37_years	chr12	9739945	9740007	9740002	+	High_confidence	8	9	62	2.771145	5.209426	chr12	9738753	9740142	LTR|ERV1|LTR12C	-	chr12	9739422	9741000	STRG.198307.1	+	9739422	9741000	0.532258
testis_male_adult_37_years	chr19	35597321	35597324	35597321	+	High_confidence	5	5	11	0.491655	2.921928	chr19	35597295	35597586	SINE|Alu|AluSx	-	chr19	35597894	35601501	LOC102723617|NR_110750.1	+	35597894,35600640,35601304	35597957,35600754,35601501	0.818182
testis_male_adult_37_years	chr20	47983190	47983200	47983193	+	High_confidence	7	7	19	0.849222	4.058814	chr20	47983227	47983403	DNA|hAT-Charlie|MER5A	+	chr20	47983225	47984313	LINC01523|NR_109942.1	+	47983225,47983981	47983521,47984313	0.736842
testis_male_adult_37_years	chr7	29970319	29970359	29970358	-	High_confidence	8	8	16	0.715134	3.589898	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	0.750000
testis_male_adult_37_years	chr3	196060539	196060540	196060539	-	High_confidence	5	5	8	0.357567	2.521641	chr3	196060516	196060826	SINE|Alu|AluY	+	chr3	196055110	196060604	TFRC|ENST00000483983.5	-	196055110,196058283,196058573,196060179	196055301,196058365,196058632,196060604	0.875000
testis_male_adult_37_years	chr6	135296353	135296354	135296353	-	RAMPAGE_only	4	4	6	0.268175	2.584963	chr6	135296206	135296888	LINE|L2|L2a	+	chr6	135285294	135300532	AHI1|ENST00000527681.1	-	135285294,135290422,135297431,135300499	135285647,135290525,135297492,135300532	1.000000
testis_male_adult_37_years	chr4	63943193	63943254	63943253	+	High_confidence	2	2	9	0.402263	2.947703	chr4	63942070	63943439	LTR|ERV1|LTR12C	-	chr4	63942803	63964684	STRG.75367.1	+	63942803,63964275	63943462,63964684	0.777778
testis_male_adult_37_years	chr22	35241505	35241525	35241524	+	High_confidence	182	185	442	19.755584	6.877416	chr22	35241003	35241950	LINE|L1|L1PBa1	-	chr22	35241499	35265567	STRG.285390.3	+	35241499,35255544,35262322,35263077,35263795,35263981,35264647	35241660,35255689,35262421,35263226,35263874,35264096,35265567	0.708145
testis_male_adult_37_years	chrX	35499505	35499530	35499529	-	High_confidence	4	5	18	0.804526	3.292770	chrX	35499090	35499999	LTR|ERV1|LTR12C	+	chrX	35498432	35499514	STRG.290458.2	-	35498432	35499514	0.777778
testis_male_adult_37_years	chr3	112119846	112119847	112119846	+	RAMPAGE_only	11	11	11	0.491655	3.277613	chr3	112119825	112119912	SINE|MIR|MIR3	-	chr3	112111453	112131004	C3orf52|ENST00000467942.2	+	112111453,112112338,112112963,112116641,112119468,112128232	112111780,112112459,112113145,112116867,112119562,112131004	0.727273
testis_male_adult_37_years	chr9	29882714	29882741	29882714	-	High_confidence	3	3	13	0.581047	3.084963	chr9	29882666	29882913	LINE|L1|L1MB4	+	chr9	29881917	29882187	STRG.159494.1	-	29881917	29882187	0.692308
testis_male_adult_37_years	chr16	20813216	20813286	20813216	+	RAMPAGE_only	5	5	27	1.206789	4.310443	chr16	20813204	20813261	DNA|hAT-Ac|OldhAT1	+	chr16	20807156	20825871	REXO5|ENST00000563617.1	+	20807156,20813189,20814926,20816115,20821761,20824438,20825832	20807363,20813302,20815053,20816212,20821902,20824527,20825871	0.925926
testis_male_adult_37_years	chr14	56992467	56992525	56992479	-	High_confidence	8	8	36	1.609052	4.440404	chr14	56992432	56992771	LTR|ERV1|MER61A	+	chr14	56954542	56992533	STRG.226850.1	-	56954542,56992199	56954584,56992533	0.722222
testis_male_adult_37_years	chr11	77571562	77571615	77571614	+	High_confidence	7	8	30	1.340877	4.450212	chr11	77571455	77571917	LTR|ERV1|HERV3-int	+	chr11	77571166	77575986	STRG.190096.1	+	77571166,77571514,77574210	77571310,77571685,77575986	0.933333
testis_male_adult_37_years	chr13	86792176	86792284	86792276	-	High_confidence	61	62	222	9.922488	5.937859	chr13	86792081	86793348	LTR|ERV1|LTR12C	+	chr13	86789334	86792712	STRG.218801.2	-	86789334	86792712	0.914414
testis_male_adult_37_years	chr1	29350113	29350129	29350113	-	High_confidence	2	2	13	0.581047	3.418296	chr1	29350054	29350332	LTR|ERVL-MaLR|MLT1L	-	chr1	29329619	29350114	LOC101928460|NR_110758.1	-	29329619,29333165,29349682	29331192,29333308,29350114	0.692308
testis_male_adult_37_years	chr3	15740201	15740220	15740219	+	High_confidence	18	20	32	1.430269	4.696132	chr3	15739896	15740381	LINE|L1|L1ME2	+	chr3	15740195	15742591	STRG.49932.1	+	15740195,15741800	15740263,15742591	0.531250
testis_male_adult_37_years	chr10	64197140	64197171	64197140	+	High_confidence	7	7	33	1.474964	4.750000	chr10	64196078	64197328	LTR|ERV1|LTR12C	-	chr10	64196762	64317083	STRG.174825.1	+	64196762,64301515,64316497	64197573,64301652,64317083	0.909091
testis_male_adult_37_years	chr8	92765797	92765840	92765839	-	High_confidence	4	4	12	0.536351	2.855389	chr8	92765116	92769888	LTR|ERVL|HERVL-int	-	chr8	92763477	92765710	STRG.151213.4	-	92763477	92765710	0.916667
testis_male_adult_37_years	chr3	128870658	128870712	128870674	+	High_confidence	55	76	198	8.849787	5.398810	chr3	128870518	128870826	LTR|ERVL-MaLR|MLT1K	+	chr3	128870088	128872414	STRG.61088.1	+	128870088	128872414	1.000000
testis_male_adult_37_years	chr14	53318064	53318082	53318065	+	RAMPAGE_only	3	5	11	0.491655	3.459432	chr14	53318040	53324215	LINE|L1|L1PA4	+	chr14	53216371	53690798	STRG.226332.7	+	53216371,53318030,53369454,53687198	53218055,53318138,53369501,53690798	0.545455
testis_male_adult_37_years	chrX	65520838	65520891	65520862	-	RAMPAGE_only	2	2	9	0.402263	2.750000	chrX	65520817	65520873	LINE|CR1|L3b	-	chrX	65512581	65534754	LAS1L|ENST00000374807.9	-	65512581,65514822,65517986,65523559,65524055,65524964,65528259,65529211,65529593,65531356,65532560,65533609,65534479	65512901,65514973,65518465,65523707,65524262,65525050,65528369,65529258,65529878,65531438,65532630,65533735,65534754	0.777778
testis_male_adult_37_years	chrX	103106697	103106698	103106697	-	High_confidence	107	108	109	4.871852	4.056260	chrX	103106282	103107915	LTR|ERV1|LTR12C	-	chrX	103106008	103106740	STRG.294630.1	-	103106008	103106740	0.972477
testis_male_adult_37_years	chrX	147937510	147937580	147937579	+	RAMPAGE_only	8	8	39	1.743140	4.736216	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.615385
testis_male_adult_37_years	chr6	17424302	17424339	17424302	+	RAMPAGE_only	2	2	7	0.312871	2.584963	chr6	17424123	17424415	SINE|Alu|AluY	+	chr6	17393731	17539290	CAP2|ENST00000476263.1	+	17393731,17421554,17426589,17462995,17493378,17507168,17507640,17513848,17539268	17393746,17421676,17426690,17463073,17493595,17507312,17507726,17513954,17539290	0.571429
testis_male_adult_37_years	chr6	143569338	143569364	143569346	-	High_confidence	43	44	125	5.586986	6.273550	chr6	143569122	143569483	LTR|ERVL-MaLR|MLT1J2	+	chr6	143568517	143569348	STRG.122544.2	-	143568517	143569348	0.904000
testis_male_adult_37_years	chr20	10431876	10431881	10431880	-	High_confidence	9	9	18	0.804526	3.947703	chr20	10431809	10431944	LINE|L2|L2a	+	chr20	10405183	10431922	MKKS|ENST00000399054.6	-	10405183,10407615,10408627,10412529,10420527,10431683	10405687,10407726,10408803,10413931,10420758,10431922	0.944444
testis_male_adult_37_years	chr1	110395736	110395771	110395736	-	High_confidence	32	34	87	3.888543	5.216972	chr1	110395418	110396904	LTR|ERV1|LTR12C	-	chr1	110393484	110396135	STRG.11257.1	-	110393484	110396135	0.919540
testis_male_adult_37_years	chr4	65433964	65433998	65433964	-	High_confidence	6	9	16	0.715134	3.240224	chr4	65433783	65434077	SINE|Alu|AluSx1	+	chr4	65433622	65434046	STRG.75569.1	-	65433622	65434046	0.750000
testis_male_adult_37_years	chr17	8717457	8717458	8717457	-	High_confidence	113	116	127	5.676378	4.889501	chr17	8717045	8718632	LTR|ERV1|LTR12C	-	chr17	8709522	8717449	STRG.250404.3	-	8709522	8717449	0.968504
testis_male_adult_37_years	chr3	57267745	57267787	57267761	+	RAMPAGE_only	4	5	23	1.028006	3.916127	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.913043
testis_male_adult_37_years	chr14	87734295	87734298	87734297	-	High_confidence	209	265	325	14.526165	5.114921	chr14	87733892	87735317	LTR|ERV1|LTR12C	-	chr14	87725954	87734298	AL359237.1|ENST00000556168.1	-	87725954,87733867	87726010,87734298	0.966154
testis_male_adult_37_years	chr2	67566488	67566549	67566548	+	High_confidence	12	13	50	2.234795	4.951088	chr2	67566342	67566864	LTR|ERVL-MaLR|MLT1F2	-	chr2	67566529	67566972	STRG.30654.1	+	67566529	67566972	0.780000
testis_male_adult_37_years	chr1	214823474	214823513	214823512	+	High_confidence	4	5	13	0.581047	3.418296	chr1	214823074	214824392	LINE|L1|L1PB1	-	chr1	214823462	214826621	STRG.19048.1	+	214823462,214825954	214824101,214826621	0.923077
testis_male_adult_37_years	chr9	112374614	112374618	112374614	+	RAMPAGE_only	2	2	7	0.312871	2.584963	chr9	112373580	112376116	LTR|ERVL|HERVL-int	-	chr9	112379908	112472405	HSDL2|NM_032303.4	+	112379908,112403994,112405623,112408906,112416840,112418859,112438430,112441698,112454012,112459448,112470431	112380180,112404158,112405722,112409021,112416944,112418958,112438625,112441770,112454162,112459577,112472405	0.857143
testis_male_adult_37_years	chr4	45476912	45476939	45476912	-	High_confidence	44	44	204	9.117962	5.407699	chr4	45476472	45477905	LTR|ERV1|LTR12C	-	chr4	45475520	45476921	STRG.74330.1	-	45475520	45476921	0.970588
testis_male_adult_37_years	chr15	44590508	44590535	44590508	-	High_confidence	3	3	12	0.536351	3.027169	chr15	44590435	44590573	SINE|Alu|FLAM_C	-	chr15	44584258	44590528	SPG11|ENST00000558790.5	-	44584258,44585635,44588566,44589251,44590420	44584558,44585850,44588638,44589414,44590528	0.750000
testis_male_adult_37_years	chr4	189002027	189002091	189002046	-	High_confidence	7	7	39	1.743140	4.668980	chr4	189001791	189002766	LINE|L1|L1PA10	-	chr4	188990714	189002075	AC122138.1|ENST00000508799.1	-	188990714,189001769	188991054,189002075	0.692308
testis_male_adult_37_years	chr1	738936	738963	738962	-	RAMPAGE_only	2	2	7	0.312871	2.807355	chr1	738864	739057	SINE|Alu|AluJb	+	chr1	725884	780790	STRG.454.46	-	725884,729897,732016,732980,733306,735422,736386,736712,738833,739802,740128,743916,744727,746694,749237,753662,756076,758966,764722,766328,768547,769496,772975,774170,778283,778558	729804,730379,732207,733213,733364,735613,736619,736770,739024,740035,743350,744391,744825,746818,749381,753852,756141,759123,765247,766387,768613,769712,773107,774280,778459,780790	0.571429
testis_male_adult_37_years	chr3	80770681	80770722	80770703	+	High_confidence	3	4	16	0.715134	3.875000	chr3	80770587	80770950	LTR|ERV1|LTR1A2	-	chr3	80770535	80778609	STRG.56417.1	+	80770535	80778609	0.750000
testis_male_adult_37_years	chr7	7581639	7581657	7581639	+	High_confidence	3	3	9	0.402263	2.947703	chr7	7581453	7582031	LTR|ERVL-MaLR|MLT1E1A	-	chr7	7581728	7583372	MIOS|ENST00000461907.2	+	7581728,7582629,7583117	7581844,7582819,7583372	0.777778
testis_male_adult_37_years	chr2	63801504	63801538	63801514	-	High_confidence	54	55	213	9.520225	5.543702	chr2	63801312	63801808	LTR|ERV1|LTR12F	-	chr2	63800295	63801743	STRG.31023.1	-	63800295	63801743	0.971831
testis_male_adult_37_years	chr6	165885345	165885346	165885345	-	High_confidence	12	17	17	0.759830	4.087463	chr6	165885179	165885534	LTR|ERVL-MaLR|THE1D	-	chr6	165884704	165885419	STRG.124271.1	-	165884704	165885419	0.823529
testis_male_adult_37_years	chr5	61698237	61698260	61698248	-	High_confidence	9	11	36	1.609052	4.594672	chr5	61697645	61698268	LINE|L2|L2a	+	chr5	61663149	61698432	AC026746.1|ENST00000513386.1	-	61663149,61667756,61677622,61687844,61688861,61695982,61697409,61697911	61663543,61667877,61677691,61688014,61688996,61696018,61697639,61698432	0.861111
testis_male_adult_37_years	chr8	31497284	31497298	31497284	+	High_confidence	5	6	14	0.625742	3.085055	chr8	31497170	31497771	LTR|ERVL|LTR50	+	chr8	31497422	31498612	AC068672.1|ENST00000520391.1	+	31497422,31498418	31497556,31498612	0.714286
testis_male_adult_37_years	chr1	233724449	233724494	233724467	+	High_confidence	11	11	43	1.921923	4.861970	chr1	233724069	233724887	LTR|ERV1|LTR12D	+	chr1	233724452	233727167	STRG.20585.1	+	233724452	233727167	0.976744
testis_male_adult_37_years	chr22	50785222	50785258	50785222	+	RAMPAGE_only	2	2	11	0.491655	3.121928	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.727273
testis_male_adult_37_years	chr4	2763026	2763061	2763060	+	High_confidence	121	134	176	7.866477	5.178280	chr4	2762353	2763411	LTR|ERV1|LTR12E	-	chr4	2763068	2764893	STRG.69619.1	+	2763068,2763739	2763573,2764893	0.977273
testis_male_adult_37_years	chr8	69001509	69001533	69001509	-	High_confidence	12	12	41	1.832532	4.628745	chr8	69001297	69001689	LTR|ERVL-MaLR|MLT1B	-	chr8	68913162	69001512	LINC01592|ENST00000524286.1	-	68913162,68924386,68954057,69001383	68913540,68924495,68954162,69001512	0.756098
testis_male_adult_37_years	chr4	188460149	188460184	188460183	-	High_confidence	9	10	23	1.028006	3.568084	chr4	188460124	188460594	LTR|ERV1|LTR12_	+	chr4	188429781	188460181	STRG.87852.1	-	188429781,188455437,188457368,188459913	188429927,188455626,188457619,188460181	0.826087
testis_male_adult_37_years	chr16	14322470	14322482	14322470	+	High_confidence	31	31	68	3.039321	4.682497	chr16	14322345	14322545	LINE|L2|L2c	+	chr16	14322470	14326512	MIR193BHG|ENST00000641033.1	+	14322470,14323296,14326012	14322543,14323383,14326512	0.985294
testis_male_adult_37_years	chr12	97761943	97761969	97761968	-	High_confidence	4	4	14	0.625742	3.664498	chr12	97761840	97762291	LTR|ERV1|MER4C	+	chr12	97753255	97761859	AC007424.1|ENST00000552615.1	-	97753255,97759426,97761669	97753600,97759470,97761859	0.714286
testis_male_adult_37_years	chr10	129404484	129404536	129404519	-	High_confidence	2	2	12	0.536351	2.792481	chr10	129404428	129404616	LINE|L1|L1PB2	+	chr10	129402578	129404051	STRG.181624.1	-	129402578	129404051	0.833333
testis_male_adult_37_years	chr17	6853860	6853929	6853886	+	High_confidence	6	7	25	1.117397	4.349649	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853860	6902192	ALOX12P2|ENST00000574727.5	+	6853860,6854213,6892002,6894317,6894883,6895095,6895342,6896315,6896553,6898528,6898799,6899390,6899592,6899867	6854060,6854435,6892075,6894513,6895006,6895199,6895503,6896459,6896763,6898698,6898929,6899490,6899760,6902192	0.520000
testis_male_adult_37_years	chr2	138601629	138601634	138601633	+	High_confidence	4	4	11	0.491655	3.121928	chr2	138601420	138601828	LTR|ERVL-MaLR|MLT1C	+	chr2	138601807	138602816	STRG.37010.1	+	138601807	138602816	0.727273
testis_male_adult_37_years	chr5	149928554	149928557	149928556	-	RAMPAGE_only	4	7	10	0.446959	2.725481	chr5	149928231	149928535	SINE|Alu|AluSg	-	chr5	149857954	149944793	PDE6A|ENST00000617647.4	-	149857954,149859891,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647,149907311,149914942,149921634,149931027,149944199	149858530,149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149903695,149907378,149915007,149921709,149931168,149944793	0.500000
testis_male_adult_37_years	chr2	201115966	201116008	201116007	+	High_confidence	3	3	10	0.446959	2.721928	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	1.000000
testis_male_adult_37_years	chr2	95857636	95857641	95857636	-	RAMPAGE_only	9	10	18	0.804526	4.058814	chr2	95857528	95858276	LTR|ERV1|MER4E	+	chr2	95852289	95859929	ANKRD36C|ENST00000488721.5	-	95852289,95855265,95857308,95859860	95853861,95856180,95857492,95859929	0.944444
testis_male_adult_37_years	chr11	39161926	39161932	39161931	+	High_confidence	27	27	64	2.860537	5.181355	chr11	39161972	39162271	SINE|Alu|AluY	+	chr11	39161620	39245371	STRG.186750.1	+	39161620,39162573,39245061	39162044,39162658,39245371	0.609375
testis_male_adult_37_years	chr11	77356542	77356563	77356542	-	High_confidence	2	2	8	0.357567	2.807355	chr11	77356428	77356670	SINE|MIR|MIR	+	chr11	77349247	77356298	PAK1|ENST00000530358.1	-	77349247,77353535,77355667	77349287,77353599,77356298	0.500000
testis_male_adult_37_years	chr1	246605837	246605881	246605880	+	High_confidence	4	5	12	0.536351	3.251629	chr1	246605408	246605993	LTR|ERV1|MER48	-	chr1	246605872	246608102	AL591623.1|ENST00000417786.1	+	246605872,246607610	246607340,246608102	0.750000
testis_male_adult_37_years	chr9	68917001	68917029	68917018	+	RAMPAGE_only	3	4	10	0.446959	3.169925	chr9	68917066	68917269	SINE|MIR|MIR	+	chr9	68742254	69009176	PIP5K1B|ENST00000478500.3	+	68742254,68742500,68818460,68822614,68824095,68863836,68876676,68888980,68894338,68917547,68919478,68919680,68923301,68934889,68940645,68963182,68964027,68965588,68966506,68991139,69008446	68742354,68742657,68818545,68822683,68824215,68863967,68876794,68889133,68894638,68917759,68919562,68919729,68923386,68935045,68940790,68963321,68964127,68965648,68966730,68991257,69009176	0.600000
testis_male_adult_37_years	chr5	160197653	160197676	160197669	+	High_confidence	3	3	13	0.581047	3.251629	chr5	160197581	160197748	DNA|hAT-Charlie|MER20	-	chr5	160198619	160234854	STRG.104282.1	+	160198619,160213735,160229545,160232097,160234819	160199157,160213819,160229624,160232273,160234854	0.692308
testis_male_adult_37_years	chr20	25408931	25408964	25408931	+	RAMPAGE_only	32	33	162	7.240734	6.033536	chr20	25408901	25409117	LINE|L2|L2c	-	chr20	25407726	25448555	STRG.274432.2	+	25407726,25413789,25417103,25418104,25425210,25441701,25445922	25411286,25413854,25417202,25418195,25425327,25441776,25448555	1.000000
testis_male_adult_37_years	chr15	23757102	23757106	23757102	+	High_confidence	367	369	623	27.845540	6.607371	chr15	23756843	23757427	LTR|ERV1|LTR12_	+	chr15	23757118	23826625	STRG.232734.1	+	23757118,23824723	23757573,23826625	0.900482
testis_male_adult_37_years	chr3	6507759	6507827	6507826	+	High_confidence	11	12	50	2.234795	5.158563	chr3	6507654	6507944	SINE|Alu|AluYi6	-	chr3	6507756	6567283	STRG.48517.1	+	6507756	6567283	0.580000
testis_male_adult_37_years	chr8	124171465	124171483	124171482	-	High_confidence	5	5	9	0.402263	3.000000	chr8	124171344	124171724	LTR|ERVL-MaLR|THE1D	-	chr8	124055021	124171522	STRG.154760.2	-	124055021,124171427	124060792,124171522	0.777778
testis_male_adult_37_years	chr20	3208675	3208676	3208675	+	High_confidence	9	9	11	0.491655	2.913977	chr20	3208670	3208727	DNA|hAT-Charlie|MER5A	-	chr20	3209524	3223618	STRG.272868.6	+	3209524,3213168,3213318,3213984,3215280,3218516,3223365	3209617,3213226,3213383,3214058,3215312,3221917,3223618	0.636364
testis_male_adult_37_years	chr20	50313370	50313393	50313370	-	RAMPAGE_only	4	5	12	0.536351	3.277613	chr20	50313276	50313754	LTR|ERVL-MaLR|MLT1K	+	chr20	50310710	50321342	LINC01271|NR_109950.1	-	50310710,50312913,50321074	50311249,50314356,50321342	0.500000
testis_male_adult_37_years	chr1	98698877	98698889	98698888	+	RAMPAGE_only	6	6	15	0.670438	3.235926	chr1	98698937	98699054	LINE|L2|L2a	+	chr1	98661722	98760500	SNX7|ENST00000306121.7	+	98661722,98684884,98691074,98691534,98695517,98698705,98701816,98738236,98760053	98661911,98685067,98691185,98691699,98695716,98698905,98701903,98738389,98760500	0.933333
testis_male_adult_37_years	chr12	132761192	132761226	132761203	-	High_confidence	8	14	50	2.234795	5.150324	chr12	132761047	132761359	LINE|L2|L2	+	chr12	132725667	132761813	ANKLE2|ENST00000539605.5	-	132725667,132728031,132729678,132734384,132735405,132736892,132741418,132743153,132747831,132748137,132750642,132754674	132727443,132728163,132730270,132734575,132735512,132737065,132741485,132743276,132748020,132748331,132750849,132761813	0.980000
testis_male_adult_37_years	chr5	126600248	126600249	126600248	+	High_confidence	6	7	7	0.312871	2.584963	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	0.857143
testis_male_adult_37_years	chr4	146933972	146934018	146934004	+	High_confidence	13	13	80	3.575671	5.188574	chr4	146933924	146935245	LINE|L2|L2a	-	chr4	146934000	146945471	AC092435.2|ENST00000515530.1	+	146934000,146942845,146945430	146934337,146942991,146945471	0.750000
testis_male_adult_37_years	chr12	104029731	104029780	104029774	-	High_confidence	6	6	23	1.028006	4.175736	chr12	104029734	104029848	SINE|MIR|MIR3	+	chr12	103988988	104029776	GLT8D2|ENST00000546436.5	-	103988988,103993391,103994334,103996734,103997450,103999396,104003134,104015012,104019629,104029695	103989577,103993504,103994501,103996847,103997535,103999514,104003306,104015105,104019676,104029776	0.869565
testis_male_adult_37_years	chr8	143648296	143648301	143648300	+	RAMPAGE_only	8	13	19	0.849222	3.947703	chr8	143647461	143648995	LINE|L2|L2a	-	chr8	143649659	143656418	ZNF623|ENST00000501748.3	+	143649659	143656418	0.894737
testis_male_adult_37_years	chr1	227393596	227393625	227393596	+	High_confidence	6	6	24	1.072701	3.970176	chr1	227393423	227393801	LTR|ERVL-MaLR|MLT1C	+	chr1	227393590	227431035	LINC01641|ENST00000445817.1	+	227393590,227395518,227409754,227429404	227393704,227395614,227409884,227431035	0.541667
testis_male_adult_37_years	chr17	43860952	43860973	43860972	-	High_confidence	6	9	23	1.028006	3.784942	chr17	43860877	43860994	SINE|MIR|MIR3	-	chr17	43855187	43860958	STRG.253910.1	-	43855187,43860613,43860895	43855303,43860782,43860958	0.521739
testis_male_adult_37_years	chr12	94408094	94408120	94408094	-	High_confidence	9	9	37	1.653748	4.503258	chr12	94407809	94408114	SINE|Alu|AluSx	-	chr12	94369952	94408104	CEP83|ENST00000549352.1	-	94369952,94375885,94378790,94400849,94403169,94407936	94370036,94376017,94379042,94400981,94403262,94408104	0.837838
testis_male_adult_37_years	chr16	55586946	55586981	55586946	-	High_confidence	11	12	31	1.385573	3.774418	chr16	55586655	55587142	LTR|ERV1|LTR12B	-	chr16	55586651	55586996	STRG.245567.1	-	55586651	55586996	0.741935
testis_male_adult_37_years	chr7	43077966	43077974	43077966	+	High_confidence	21	29	79	3.530975	5.895890	chr7	43077721	43078048	LTR|ERV1|MER61A	-	chr7	43077983	43079654	STRG.130260.1	+	43077983,43079361	43078085,43079654	0.607595
testis_male_adult_37_years	chr9	114418505	114418615	114418604	-	RAMPAGE_only	10	10	65	2.905233	3.583207	chr9	114418484	114419013	LINE|L2|L2a	+	chr9	114402210	114504339	STRG.167004.3	-	114402210,114403216,114403895,114406354,114407946,114424333,114424987,114426210,114466266,114478552,114504183	114402936,114403339,114404077,114406892,114423523,114424546,114425024,114426413,114466392,114478771,114504339	0.953846
testis_male_adult_37_years	chr12	112470374	112470428	112470404	+	RAMPAGE_only	9	13	52	2.324186	5.323856	chr12	112470303	112470489	SINE|MIR|MIRb	-	chr12	112419111	112504764	PTPN11|ENST00000635625.1	+	112419111,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486462,112488442,112489023,112502143,112504694	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504764	0.557692
testis_male_adult_37_years	chr4	137941781	137941799	137941798	+	RAMPAGE_only	9	9	17	0.759830	3.500000	chr4	137941568	137941868	SINE|Alu|AluY	+	chr4	137943026	137953854	STRG.82696.1	+	137943026,137950180,137952319	137943401,137950250,137953854	0.941176
testis_male_adult_37_years	chr20	37178876	37178877	37178876	-	High_confidence	4	4	7	0.312871	2.521641	chr20	37178563	37178867	SINE|Alu|AluSx	-	chr20	37159000	37178966	MROH8|ENST00000422138.1	-	37159000,37160096,37168120,37171911,37173994,37178798	37159036,37160176,37168243,37172057,37174116,37178966	1.000000
testis_male_adult_37_years	chr3	132434112	132434159	132434112	+	RAMPAGE_only	4	5	19	0.849222	4.142664	chr3	132433931	132434236	SINE|Alu|AluY	+	chr3	132417708	132467346	DNAJC13|ENST00000486798.5	+	132417708,132434537,132446474,132447320,132447897,132450646,132453297,132453598,132454065,132456234,132456500,132456662,132457268,132460249,132461049,132462466,132463695,132465994,132466298,132467169	132417760,132434618,132446550,132447470,132447939,132450847,132453504,132453694,132454157,132456401,132456580,132456832,132457368,132460357,132461205,132462523,132463817,132466070,132466394,132467346	0.578947
testis_male_adult_37_years	chr2	202117041	202117074	202117045	-	High_confidence	51	51	262	11.710324	5.847533	chr2	202116673	202117219	LTR|ERVL-MaLR|MLT1F1	+	chr2	202113625	202117058	AC079354.1|ENST00000409819.1	-	202113625,202114928	202114588,202117058	0.977099
testis_male_adult_37_years	chr21	27746307	27746337	27746333	+	High_confidence	31	31	181	8.089956	5.530466	chr21	27746272	27746768	LTR|ERV1|LOR1a	-	chr21	27746291	27751174	STRG.280163.1	+	27746291,27751071	27746594,27751174	0.900552
testis_male_adult_37_years	chr1	102853755	102853790	102853789	-	High_confidence	5	5	20	0.893918	3.576618	chr1	102853603	102855052	LTR|ERV1|LTR12C	+	chr1	102763321	102853842	AC099567.1|ENST00000414418.1	-	102763321,102766556,102767522,102767774,102772957,102799803,102853591	102763505,102766656,102767630,102767802,102773092,102799928,102853842	0.600000
testis_male_adult_37_years	chr19	36643594	36643642	36643605	-	High_confidence	9	10	36	1.609052	4.264578	chr19	36643461	36643909	DNA|hAT-Charlie|Charlie1	+	chr19	36638630	36643607	ZNF461|ENST00000540605.2	-	36638630,36643273	36640043,36643607	0.972222
testis_male_adult_37_years	chr17	67352819	67352840	67352830	-	RAMPAGE_only	35	38	89	3.977934	5.184507	chr17	67352766	67352999	DNA|TcMar-Tigger|Tigger7	+	chr17	67340773	67366547	PSMD12|ENST00000584008.5	-	67340773,67342185,67344605,67345744,67347115,67347335,67348549,67350228,67357302,67357518,67361094,67362775,67366411	67341052,67342263,67344780,67345857,67347250,67347485,67348654,67350336,67357431,67357578,67361261,67362892,67366547	0.977528
testis_male_adult_37_years	chr7	54759973	54759974	54759973	-	High_confidence	8	8	10	0.446959	2.947703	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	0.900000
testis_male_adult_37_years	chr4	172156148	172156166	172156165	+	High_confidence	9	9	18	0.804526	3.350209	chr4	172155984	172156360	LTR|ERV1|MER48	-	chr4	172155923	172813681	STRG.86115.1	+	172155923,172229655,172311613,172348522,172809360,172813539	172156222,172229764,172311752,172348689,172809546,172813681	0.944444
testis_male_adult_37_years	chr12	7714154	7714179	7714178	+	RAMPAGE_only	5	5	11	0.491655	2.921928	chr12	7714027	7714231	SINE|Alu|AluYj4	+	chr12	7711453	7717559	DPPA3|NM_199286.3	+	7711453,7715182,7716197,7716966	7711652,7715427,7716239,7717559	0.818182
testis_male_adult_37_years	chr2	100603726	100603748	100603740	+	High_confidence	16	16	53	2.368882	4.914347	chr2	100603424	100603780	LTR|ERVL-MaLR|MLT1G	-	chr2	100603694	100604808	STRG.33376.1	+	100603694,100603959	100603890,100604808	0.981132
testis_male_adult_37_years	chr11	93743683	93743692	93743683	+	RAMPAGE_only	4	4	13	0.581047	3.180833	chr11	93743684	93743770	SINE|MIR|MIRb	+	chr11	93741685	93755326	STRG.191915.7	+	93741685,93747296,93750345,93753681,93753935,93755209	93746480,93747448,93750444,93753755,93754037,93755326	1.000000
testis_male_adult_37_years	chr1	53889364	53889365	53889364	-	High_confidence	6	7	9	0.402263	2.725481	chr1	53889348	53889564	SINE|MIR|MIRb	+	chr1	53851718	53889733	YIPF1|ENST00000464950.6	-	53851718,53855000,53860055,53866199,53866757,53871371,53878314,53878641,53883112,53888906,53889712	53852270,53855051,53860153,53866382,53866924,53871488,53878402,53878722,53883276,53888986,53889733	1.000000
testis_male_adult_37_years	chr17	62903137	62903149	62903137	+	High_confidence	16	16	41	1.832532	4.701746	chr17	62902903	62903165	LINE|L2|L2c	+	chr17	62903151	62904366	STRG.255893.1	+	62903151,62904255	62903411,62904366	0.780488
testis_male_adult_37_years	chr5	137128133	137128144	137128143	+	High_confidence	4	4	9	0.402263	2.500000	chr5	137127974	137128333	LTR|ERVL-MaLR|MLT1A0	+	chr5	137128196	137130969	LOC105379192|NR_134246.1	+	137128196,137130689	137128260,137130969	0.777778
testis_male_adult_37_years	chrX	30883647	30883739	30883738	-	RAMPAGE_only	15	18	82	3.665063	5.433874	chrX	30883714	30883798	DNA|TcMar-Tigger|Tigger16b	+	chrX	30842987	30889276	STRG.290154.1	-	30842987,30846550,30852777,30854115,30859486,30867114,30867464,30871698,30889113	30843049,30846644,30852938,30855562,30859678,30867218,30867549,30871801,30889276	0.841463
testis_male_adult_37_years	chr2	191245123	191245159	191245123	+	High_confidence	4	4	16	0.715134	3.240224	chr2	191245108	191245343	LINE|L1|L1M4b	+	chr2	191245184	191346274	MYO1B|ENST00000418908.5	+	191245184,191276886,191296110,191329934,191341460,191346235	191245257,191277030,191296226,191330029,191341565,191346274	0.937500
testis_male_adult_37_years	chr5	8840460	8840486	8840460	-	High_confidence	12	12	22	0.983310	3.684184	chr5	8840276	8841624	LTR|ERV1|LTR12D	+	chr5	8833950	8840833	STRG.89264.2	-	8833950,8839553	8835423,8840833	0.909091
testis_male_adult_37_years	chr18	31948778	31948817	31948816	-	RAMPAGE_only	3	3	9	0.402263	2.503258	chr18	31948785	31948894	LTR|ERV1|MER4E1	-	chr18	31829937	31943136	TRAPPC8|ENST00000580104.5	-	31829937,31832083,31839311,31846715,31849565,31852445,31852594,31853848,31855659,31857539,31864626,31866848,31867401,31870371,31870925,31873429,31874479,31890734,31897785,31900924,31907459,31908302,31908753,31909666,31913368,31916271,31917577,31931328,31942607,31943114	31830989,31832173,31839457,31846817,31849739,31852504,31852663,31853945,31855807,31857720,31864781,31866975,31867476,31870502,31871120,31873538,31874704,31890866,31897891,31901025,31907610,31908418,31909010,31909760,31913522,31916446,31917667,31931523,31942893,31943136	1.000000
testis_male_adult_37_years	chr21	21909961	21909962	21909961	-	High_confidence	145	145	146	6.525600	5.658705	chr21	21909493	21910287	LTR|ERV1|LTR12D	-	chr21	21908567	21910258	STRG.279315.1	-	21908567	21910258	0.986301
testis_male_adult_37_years	chr15	55380347	55380353	55380347	-	RAMPAGE_only	3	3	12	0.536351	2.855389	chr15	55380283	55380594	SINE|Alu|AluY	-	chr15	55371986	55398268	CCPG1|ENST00000570272.5	-	55371986,55376948,55378299,55385599,55389364,55398219	55372044,55377150,55378376,55385714,55389433,55398268	0.916667
testis_male_adult_37_years	chr16	14245640	14245648	14245647	+	RAMPAGE_only	7	7	13	0.581047	3.546594	chr16	14245645	14245696	SINE|tRNA|LFSINE_Vert	+	chr16	14140632	14261448	STRG.243314.7	+	14140632,14210242,14212353,14213544,14217125,14240236,14246472,14248925,14251861,14252364,14260908	14140760,14210308,14212409,14213620,14234283,14245660,14247507,14249081,14252023,14258161,14261448	1.000000
testis_male_adult_37_years	chr1	16437389	16437405	16437395	-	High_confidence	5	5	17	0.759830	3.875000	chr1	16437365	16437484	SINE|MIR|MIRc	+	chr1	16395680	16437393	SPATA21|ENST00000466212.5	-	16395680,16396557,16399343,16400481,16400719,16403726,16403967,16404966,16408497,16409117,16409600,16410777,16421910,16425523,16427863,16431242,16437127	16396312,16396746,16399521,16400635,16400892,16403844,16404039,16405104,16408705,16409203,16410043,16410915,16422194,16425731,16428015,16431422,16437393	0.823529
testis_male_adult_37_years	chr11	122556711	122556756	122556755	-	High_confidence	16	16	69	3.084017	5.443679	chr11	122556640	122557789	LTR|ERV1|LTR12D	+	chr11	122154754	122556721	MIR100HG|ENST00000533109.6	-	122154754,122180335,122292283,122293306,122539478,122553938,122556403	122155632,122180398,122292403,122293606,122539506,122554025,122556721	0.840580
testis_male_adult_37_years	chr5	113323000	113323025	113323022	+	High_confidence	17	17	41	1.832532	4.300623	chr5	113322830	113323351	LTR|ERVL-MaLR|MLT1F	+	chr5	113323027	113436341	AC079465.1|ENST00000416046.2	+	113323027,113399942,113428659,113433026,113435544	113323273,113399999,113428779,113435167,113436341	0.756098
testis_male_adult_37_years	chr19	48145838	48145858	48145855	+	High_confidence	6	6	15	0.670438	3.664498	chr19	48145850	48145966	SINE|MIR|MIR	-	chr19	48145907	48147413	AC011466.2|ENST00000594589.1	+	48145907,48147265	48146118,48147413	0.733333
testis_male_adult_37_years	chr10	63664646	63664670	63664646	+	High_confidence	9	10	61	2.726449	5.463069	chr10	63664644	63665398	LTR|ERV1|LTR17	-	chr10	63664663	63990568	AC022387.1|ENST00000444770.1	+	63664663,63684921,63990268	63664772,63685306,63990568	0.655738
testis_male_adult_37_years	chr2	227382019	227382037	227382036	-	High_confidence	15	15	27	1.206789	3.657385	chr2	227381959	227382168	LTR|ERVL-MaLR|MLT1O	+	chr2	227379225	227381995	TM4SF20|ENST00000449706.1	-	227379225,227381588	227379360,227381995	0.740741
testis_male_adult_37_years	chr15	88205953	88205974	88205973	-	High_confidence	11	11	28	1.251485	4.161978	chr15	88205948	88206057	LINE|L2|L2a	+	chr15	87916261	88205974	NTRK3|NM_001320135.1	-	87916261,87929190,87933011,87940622,88032856,88126270,88127161,88128710,88135100,88135898,88136466,88137403,88147334,88183417,88184224,88205819	87916560,87929434,87933184,87940753,88033045,88126373,88127226,88128734,88135397,88136040,88136609,88137561,88147403,88183489,88184299,88205974	0.857143
testis_male_adult_37_years	chr11	114405703	114405759	114405758	+	RAMPAGE_only	2	2	11	0.491655	3.277613	chr11	114405747	114405830	LINE|CR1|X6B_LINE	-	chr11	114400673	114408123	RBM7|ENST00000545678.1	+	114400673,114405705,114407444	114400767,114405799,114408123	0.818182
testis_male_adult_37_years	chrX	136168194	136168209	136168194	+	High_confidence	7	7	16	0.715134	3.750000	chrX	136168049	136168241	SINE|MIR|MIR	-	chrX	136168193	136208575	FHL1|ENST00000434885.5	+	136168193,136169906,136206406,136207015,136207791,136208454	136168267,136169980,136206588,136207190,136207961,136208575	1.000000
testis_male_adult_37_years	chr1	211346121	211346122	211346121	+	High_confidence	4	4	7	0.312871	2.521641	chr1	211346097	211346358	LINE|L2|L2c	+	chr1	211346363	211374946	TRAF5|NM_145759.2	+	211346363,211353238,211354409,211356366,211359911,211360701,211361087,211365375,211369451,211371301,211372127	211346422,211353457,211354467,211356468,211360076,211360779,211361162,211365468,211369592,211371470,211374946	0.857143
testis_male_adult_37_years	chr5	146050065	146050090	146050065	+	High_confidence	99	100	247	11.039885	5.809764	chr5	146050103	146050226	LINE|CR1|Plat_L3	+	chr5	146050063	146062781	SH3RF2|ENST00000503848.5	+	146050063,146055980,146062425	146050127,146056231,146062781	0.720648
testis_male_adult_37_years	chr4	28113239	28113240	28113239	-	RAMPAGE_only	10	10	14	0.625742	3.807355	chr4	28112596	28114035	LTR|ERV1|LTR12C	+	chr4	28031622	28032463	STRG.73022.1	-	28031622	28032463	0.785714
testis_male_adult_37_years	chr1	27558503	27558505	27558504	-	High_confidence	4	7	9	0.402263	2.750000	chr1	27558497	27558557	SINE|MIR|MIR3	+	chr1	27551667	27558361	AHDC1|ENST00000487743.3	-	27551667,27552038,27552891,27553073,27558304	27551850,27552189,27552929,27553185,27558361	0.777778
testis_male_adult_37_years	chr13	37265842	37265870	37265846	+	High_confidence	4	6	20	0.893918	4.037401	chr13	37265611	37266007	LTR|ERVL-MaLR|MSTA	+	chr13	37265917	37266791	STRG.213419.1	+	37265917	37266791	0.900000
testis_male_adult_37_years	chr3	147245190	147245191	147245190	-	High_confidence	22	22	25	1.117397	4.229871	chr3	147244906	147246119	LTR|ERV1|LTR12C	-	chr3	147155784	147245684	STRG.63143.1	-	147155784,147244837	147156561,147245684	0.600000
testis_male_adult_37_years	chr1	10430976	10431008	10430993	+	High_confidence	2	2	9	0.402263	2.947703	chr1	10431042	10431162	SINE|MIR|MIRb	+	chr1	10431122	10442502	CENPS|ENST00000462462.1	+	10431122,10440346,10442264	10431401,10440413,10442502	0.777778
testis_male_adult_37_years	chr19	17336685	17336727	17336685	+	High_confidence	13	13	35	1.564356	4.852169	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.857143
testis_male_adult_37_years	chr5	128659176	128659209	128659176	-	High_confidence	14	19	48	2.145403	4.679708	chr5	128658884	128659342	LTR|ERVL-MaLR|MLT1G3	+	chr5	128656012	128659273	STRG.100858.1	-	128656012,128659098	128656452,128659273	0.666667
testis_male_adult_37_years	chr14	42481857	42481858	42481857	-	High_confidence	14	14	14	0.625742	3.467720	chr14	42481571	42482951	LTR|ERV1|LTR12C	-	chr14	42477980	42481935	STRG.225021.1	-	42477980,42481683	42478120,42481935	0.857143
testis_male_adult_37_years	chr3	81562095	81562130	81562095	-	RAMPAGE_only	5	6	29	1.296181	3.526130	chr3	81562068	81562190	LINE|L2|L2b	+	chr3	81523256	81563860	STRG.56762.5	-	81523256,81536910,81562007	81535325,81537095,81563860	0.862069
testis_male_adult_37_years	chr2	139991029	139991072	139991039	+	High_confidence	11	11	58	2.592362	4.920662	chr2	139989826	139991264	LTR|ERV1|LTR12C	-	chr2	139991026	139992387	STRG.37122.1	+	139991026,139992229	139991362,139992387	0.793103
testis_male_adult_37_years	chr5	165241718	165241756	165241751	-	High_confidence	34	36	116	5.184723	6.034284	chr5	165241000	165242560	LTR|ERVL|ERVL-B4-int	-	chr5	165220576	165241752	LINC01938|ENST00000521341.1	-	165220576,165240461,165241628	165222020,165240757,165241752	0.732759
testis_male_adult_37_years	chr6	118467363	118467366	118467363	-	RAMPAGE_only	4	4	8	0.357567	2.500000	chr6	118466759	118467472	LINE|L2|L2b	-	chr6	118460771	118496350	STRG.119652.3	-	118460771,118469071,118470536,118479870,118480395,118481778,118483705	118465568,118469303,118470644,118479921,118480513,118481933,118496350	1.000000
testis_male_adult_37_years	chr8	110120819	110120857	110120854	+	High_confidence	25	25	53	2.368882	4.980569	chr8	110120639	110121179	LTR|ERV1|LTR12_	+	chr8	110120673	110122534	STRG.153181.1	+	110120673	110122534	0.905660
testis_male_adult_37_years	chr11	33990097	33990108	33990107	-	RAMPAGE_only	7	7	22	0.983310	4.070656	chr11	33989916	33991575	LTR|ERV1|LTR12C	+	chr11	33954611	33955595	STRG.185881.1	-	33954611	33955595	0.545455
testis_male_adult_37_years	chr5	58068703	58068704	58068703	-	High_confidence	95	100	117	5.229419	5.636350	chr5	58068285	58069664	LTR|ERV1|LTR12C	-	chr5	58067405	58068703	STRG.93672.2	-	58067405,58068321	58067894,58068703	0.769231
testis_male_adult_37_years	chr3	182536762	182536779	182536762	-	RAMPAGE_only	3	3	15	0.670438	3.506891	chr3	182536738	182536991	SINE|tRNA|LFSINE_Vert	-	chr3	182504132	182511866	STRG.67027.1	-	182504132,182504671,182511804	182504450,182504714,182511866	0.866667
testis_male_adult_37_years	chr12	71667814	71667824	71667814	+	High_confidence	3	3	9	0.402263	3.000000	chr12	71667688	71668064	DNA|hAT-Blackjack|MER63B	-	chr12	71667782	71676941	THAP2|ENST00000551238.1	+	71667782,71674202,71676688	71667910,71674398,71676941	0.888889
testis_male_adult_37_years	chr20	768300	768304	768303	-	High_confidence	4	4	11	0.491655	2.846439	chr20	768177	768259	DNA|hAT-Charlie|MER113A	-	chr20	760118	768484	SLC52A3|ENST00000488495.2	-	760118,761700,763497,765207,768296	761238,761824,764003,766334,768484	0.909091
testis_male_adult_37_years	chr1	46193184	46193185	46193184	-	High_confidence	6	6	9	0.402263	2.500000	chr1	46193040	46193162	SINE|MIR|MIR1_Amn	-	chr1	46190116	46193800	POMGNT1|ENST00000485714.1	-	46190116,46192307,46192517,46192899,46193173,46193304	46192223,46192436,46192590,46192958,46193215,46193800	0.888889
testis_male_adult_37_years	chr14	19400044	19400073	19400058	-	RAMPAGE_only	4	4	16	0.715134	3.456565	chr14	19399503	19400833	LINE|L1|L1PA12	-	chr14	19372760	19434341	STRG.221972.16	-	19372760,19381176,19390614,19404616,19413353,19414561,19416287,19421623,19424164,19425605,19428541,19428874,19433768	19376011,19389449,19403109,19404735,19413520,19414606,19416358,19421694,19424302,19425712,19428715,19428989,19434341	0.937500
testis_male_adult_37_years	chr1	199959905	199959929	199959928	-	High_confidence	2	2	9	0.402263	2.750000	chr1	199959486	199960727	LTR|ERV1|LTR12C	+	chr1	199957875	199960335	STRG.17680.2	-	199957875,199959254,199959448	199958784,199959327,199960335	0.888889
testis_male_adult_37_years	chr12	131121896	131121963	131121896	+	High_confidence	8	9	33	1.474964	3.630120	chr12	131121805	131121952	LTR|ERVL-MaLR|MLT1K	-	chr12	131121953	131139489	ADGRD1|ENST00000540207.1	+	131121953,131131724,131136036,131136972,131138136,131139167	131121995,131131816,131136163,131137014,131138229,131139489	0.878788
testis_male_adult_37_years	chr16	10429369	10429374	10429369	+	High_confidence	8	8	17	0.759830	3.024397	chr16	10429360	10429638	SINE|Alu|AluSz6	-	chr16	10428900	10483638	ATF7IP2|ENST00000568027.5	+	10428900,10430610,10433524,10438100,10440363,10472109,10473478,10473922,10480878,10481835	10429016,10431455,10433649,10438235,10440462,10472183,10473534,10473989,10480964,10483638	0.941176
testis_male_adult_37_years	chr3	6664933	6664934	6664933	-	High_confidence	4	4	6	0.268175	2.584963	chr3	6664744	6665243	LTR|ERVL|MER70C	+	chr3	6632535	6664943	GRM7-AS3|ENST00000458713.1	-	6632535,6635086,6640933,6644838,6664828	6632579,6635197,6641066,6644889,6664943	0.500000
testis_male_adult_37_years	chrX	111718184	111718210	111718189	+	High_confidence	2	2	9	0.402263	2.750000	chrX	111718150	111718232	LINE|L2|L2	-	chrX	111717878	111728270	STRG.295405.5	+	111717878,111718111,111720094,111721602,111722792,111723797,111724933,111726808,111727331,111728184	111717927,111718274,111720170,111721711,111722857,111723898,111725061,111727055,111727770,111728270	0.666667
testis_male_adult_37_years	chr9	123736327	123736341	123736327	-	RAMPAGE_only	4	5	12	0.536351	3.251629	chr9	123736227	123736378	SINE|MIR|MIRc	-	chr9	123569544	123757759	DENND1A|ENST00000474676.1	-	123569544,123583168,123609435,123630375,123652012,123667025,123671290,123757702	123569595,123583270,123609481,123630476,123652123,123667079,123671371,123757759	0.666667
testis_male_adult_37_years	chr6	7344661	7344680	7344661	-	High_confidence	3	3	7	0.312871	2.584963	chr6	7344034	7345477	LTR|ERV1|LTR12C	+	chr6	7343089	7345317	STRG.107580.1	-	7343089	7345317	0.571429
testis_male_adult_37_years	chr6	19157592	19157595	19157594	-	RAMPAGE_only	5	8	10	0.446959	3.121928	chr6	19156978	19157914	LTR|ERVL|MER21C	-	chr6	19068542	19180480	LOC101928519|NR_110860.1	-	19068542,19086160,19087927,19098291,19099590,19126436,19145610,19151625,19175832,19178399,19180151	19069123,19086371,19088071,19098408,19099741,19126643,19145686,19151785,19175922,19178465,19180480	0.800000
testis_male_adult_37_years	chr10	80313698	80313701	80313700	-	RAMPAGE_only	3	4	7	0.312871	2.584963	chr10	80313481	80313890	LTR|ERVL-MaLR|MSTA	-	chr10	80271819	80289684	MAT1A|ENST00000372213.7	-	80271819,80274519,80275016,80276375,80280172,80280679,80283915,80285511,80289332	80273883,80274653,80275199,80276594,80280316,80280792,80284038,80285589,80289684	0.571429
testis_male_adult_37_years	chr9	136341950	136341968	136341950	+	RAMPAGE_only	4	4	9	0.402263	3.169925	chr9	136341826	136341950	SINE|Alu|AluJr	-	chr9	136331982	136359605	GPSM1|ENST00000354753.7	+	136331982,136334446,136335965,136336920,136337440,136337845,136338554,136339706,136340869,136348696,136349586,136355689,136356341,136358013	136332170,136334668,136336101,136337072,136337564,136337961,136338710,136339815,136340993,136348767,136349763,136355846,136356550,136359605	0.888889
testis_male_adult_37_years	chr6	130978732	130978776	130978738	-	High_confidence	20	21	51	2.279490	4.918563	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.823529
testis_male_adult_37_years	chr2	57335323	57335324	57335323	+	High_confidence	75	75	86	3.843847	5.150312	chr2	57335123	57335781	LTR|ERV1|LTR12C	+	chr2	57335342	57335807	STRG.29461.1	+	57335342	57335807	0.918605
testis_male_adult_37_years	chr17	14834604	14834605	14834604	+	High_confidence	68	68	72	3.218104	5.105198	chr17	14834325	14834951	LTR|ERV1|LTR12D	+	chr17	14834637	14948357	STRG.251435.2	+	14834637,14837940,14839968,14944517,14947816	14834942,14838216,14840123,14944657,14948357	0.527778
testis_male_adult_37_years	chr1	91950155	91950161	91950160	+	High_confidence	5	5	9	0.402263	2.641604	chr1	91950166	91950449	SINE|Alu|AluSx1	+	chr1	91949433	91976421	STRG.9655.7	+	91949433,91949637,91949889,91962717,91964626,91968145,91976265	91949488,91949682,91950474,91962946,91964764,91968260,91976421	0.888889
testis_male_adult_37_years	chr4	89490948	89490949	89490948	+	High_confidence	1205	1209	1295	57.881180	5.184376	chr4	89489873	89491365	LTR|ERV1|LTR12C	+	chr4	89490936	89692319	STRG.77848.1	+	89490936,89587820,89627781,89691284,89691904	89491494,89587940,89627917,89691405,89692319	0.972201
testis_male_adult_37_years	chr7	26805162	26805172	26805162	-	RAMPAGE_only	28	28	45	2.011315	5.078639	chr7	26805081	26805202	SINE|Alu|FLAM_A	+	chr7	26726888	26855151	SKAP2|ENST00000495802.5	-	26726888,26738794,26739886,26844029,26854136,26854784,26855117	26727006,26738878,26739964,26844137,26854162,26854890,26855151	0.577778
testis_male_adult_37_years	chr14	70783439	70783440	70783439	-	High_confidence	9	11	14	0.625742	3.546594	chr14	70783278	70783452	LTR|ERV1?|LTR103_Mam	-	chr14	70729665	70783440	MAP3K9|ENST00000553414.5	-	70729665,70732538,70733756,70734385,70738244,70739897,70742350,70748828,70749932,70761001,70783222	70730864,70733342,70733798,70734498,70738398,70740164,70742591,70749004,70750081,70761182,70783440	0.642857
testis_male_adult_37_years	chr9	123179165	123179221	123179220	-	RAMPAGE_only	22	23	52	2.324186	5.171406	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.980769
testis_male_adult_37_years	chr11	73598934	73598950	73598934	-	High_confidence	5	5	14	0.625742	3.467720	chr11	73598878	73599293	LINE|L1|L1ME4a	+	chr11	73400477	73598189	FAM168A|NM_015159.2	-	73400477,73407512,73409486,73411393,73419873,73430689,73468404,73597922	73406744,73407643,73409661,73411536,73419999,73430770,73468492,73598189	0.714286
testis_male_adult_37_years	chr5	13578521	13578574	13578533	-	High_confidence	6	7	28	1.251485	4.430632	chr5	13578350	13579755	LTR|ERV1|LTR12C	+	chr5	13395826	13578942	STRG.90136.1	-	13395826,13576591,13577959	13396218,13576668,13578942	0.928571
testis_male_adult_37_years	chr6	10491682	10491694	10491682	+	High_confidence	6	6	19	0.849222	4.169925	chr6	10491486	10492779	LTR|ERV1|LTR12D	+	chr6	10492235	10512538	STRG.108166.8	+	10492235,10492819,10509086	10492394,10492931,10512538	0.631579
testis_male_adult_37_years	chr4	47897967	47897976	47897967	-	RAMPAGE_only	3	3	8	0.357567	2.521641	chr4	47897517	47897935	LINE|L1|L1MC1	-	chr4	47847242	47914539	NFXL1|ENST00000507489.1	-	47847242,47851094,47851855,47855058,47862845,47875126,47878524,47879095,47884345,47885497,47885878,47890612,47894179,47896522,47897966,47898756,47898958,47899369,47903192,47905236,47910823,47913968,47914364	47848336,47851148,47851942,47855163,47862915,47875293,47878665,47879117,47884437,47885657,47885999,47890703,47894302,47896647,47898081,47898857,47899120,47899548,47903323,47905346,47910994,47914205,47914539	0.750000
testis_male_adult_37_years	chr14	34895063	34895089	34895088	-	High_confidence	6	6	15	0.670438	3.521641	chr14	34894826	34895089	SINE|Alu|AluSc8	+	chr14	34810941	34895082	STRG.223792.7	-	34810941,34826012,34862043,34874491,34894808	34811036,34826156,34862322,34874662,34895082	0.800000
testis_male_adult_37_years	chr3	71289614	71289619	71289618	-	High_confidence	3	3	7	0.312871	2.521641	chr3	71289523	71289640	LINE|L2|L2a	+	chr3	71197885	71289713	FOXP1|ENST00000648107.1	-	71197885,71198201,71289542	71198068,71198392,71289713	0.857143
testis_male_adult_37_years	chr18	2350488	2350507	2350506	+	High_confidence	2	3	6	0.268175	2.584963	chr18	2350267	2350522	LINE|L2|L2b	-	chr18	2350494	2371024	STRG.258887.1	+	2350494,2351223,2365042,2370779	2350557,2351429,2365195,2371024	0.666667
testis_male_adult_37_years	chr12	9065159	9065181	9065167	+	RAMPAGE_only	6	7	31	1.385573	4.373551	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9063373	9069827	STRG.198268.2	+	9063373	9069827	1.000000
testis_male_adult_37_years	chr4	106321402	106321427	106321426	+	RAMPAGE_only	4	4	15	0.670438	3.773557	chr4	106320774	106322302	Retroposon|SVA|SVA_A	+	chr4	106316527	106348491	STRG.79282.3	+	106316527,106324984,106327450,106328075,106331671,106336868,106347525	106321451,106325118,106327564,106328243,106331883,106337037,106348491	0.933333
testis_male_adult_37_years	chr18	10915829	10915840	10915829	-	RAMPAGE_only	2	3	6	0.268175	2.584963	chr18	10915777	10916836	LTR|ERV1|LTR12C	-	chr18	10857064	10890692	PIEZO2|ENST00000579899.1	-	10857064,10871252,10890479	10857211,10871415,10890692	0.833333
testis_male_adult_37_years	chr13	39431648	39431661	39431648	-	RAMPAGE_only	2	2	8	0.357567	2.750000	chr13	39431458	39431902	LINE|L2|L2a	+	chr13	39342891	39603171	LHFPL6|ENST00000379589.3	-	39342891,39378427,39600831,39602882	39344054,39378526,39601390,39603171	0.500000
testis_male_adult_37_years	chr10	101819067	101819070	101819067	+	High_confidence	14	25	46	2.056011	5.028890	chr10	101819017	101819314	LINE|L2|L2c	-	chr10	101819067	101828889	KCNIP2-AS1|NR_045118.1	+	101819067,101827859,101828180	101819248,101827939,101828889	0.586957
testis_male_adult_37_years	chr1	179877271	179877306	179877305	-	High_confidence	2	3	9	0.402263	2.500000	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179865064	179877790	TOR1AIP2|ENST00000495650.1	-	179865064,179877692	179865854,179877790	0.777778
testis_male_adult_37_years	chr19	37465314	37465319	37465314	-	RAMPAGE_only	7	8	14	0.625742	3.182006	chr19	37464765	37465454	LINE|L2|L2a	+	chr19	37411154	37467229	ZNF569|ENST00000392149.6	-	37411154,37425867,37426251,37444906,37467086	37414419,37425963,37426378,37444964,37467229	0.714286
testis_male_adult_37_years	chr19	35161580	35161612	35161589	+	High_confidence	14	17	61	2.726449	4.457126	chr19	35161248	35161749	LTR|ERVL-MaLR|MLT1K	-	chr19	35160762	35169880	FXYD5|ENST00000586925.1	+	35160762,35166250,35169565	35160801,35166325,35169880	0.672131
testis_male_adult_37_years	chr6	10434828	10434851	10434828	-	High_confidence	3	3	6	0.268175	2.584963	chr6	10434600	10434992	LTR|ERVL-MaLR|MLT1B	-	chr6	10427784	10434822	LINC00518|NR_027793.1	-	10427784,10434247,10434512	10430313,10434426,10434822	0.666667
testis_male_adult_37_years	chr17	3472374	3472408	3472400	+	High_confidence	10	11	53	2.368882	5.260847	chr17	3472412	3472594	SINE|MIR|MIRb	+	chr17	3472373	3476395	ASPA|ENST00000577034.1	+	3472373,3475417,3476133	3472462,3475629,3476395	0.622642
testis_male_adult_37_years	chr1	165207544	165207567	165207566	+	RAMPAGE_only	3	3	7	0.312871	2.584963	chr1	165207423	165207650	SINE|MIR|MIRc	+	chr1	165210626	165213090	AL390730.1|ENST00000457106.1	+	165210626,165211235,165212841	165210967,165211337,165213090	0.571429
testis_male_adult_37_years	chr6	4725412	4725427	4725419	+	High_confidence	6	6	24	1.072701	4.095795	chr6	4724469	4725869	LTR|ERV1|LTR12C	-	chr6	4725151	4892347	STRG.107420.7	+	4725151,4733158,4734761,4891712	4725880,4733248,4734844,4892347	0.875000
testis_male_adult_37_years	chr13	36789160	36789182	36789181	-	High_confidence	12	12	44	1.966619	5.193707	chr13	36789010	36789381	LTR|ERVL-MaLR|MSTD	-	chr13	36706064	36789189	STRG.213276.1	-	36706064,36753099,36755155,36788980	36706709,36753219,36755387,36789189	0.659091
testis_male_adult_37_years	chr8	121667546	121667563	121667546	+	High_confidence	3	6	20	0.893918	4.321928	chr8	121666488	121667976	LTR|ERV1|LTR12C	-	chr8	121667249	121707676	STRG.154278.1	+	121667249,121707543	121667980,121707676	0.550000
testis_male_adult_37_years	chr11	65382641	65382660	65382645	-	High_confidence	5	5	17	0.759830	4.087463	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65379452	65382645	SLC25A45|ENST00000529962.5	-	65379452,65379866,65380131,65380533,65381874,65382485	65379561,65379938,65380175,65380622,65381969,65382645	0.705882
testis_male_adult_37_years	chr13	85363583	85363619	85363618	+	High_confidence	45	50	89	3.977934	5.241721	chr13	85362954	85364056	LTR|ERV1|LTR12D	+	chr13	85363602	85544662	LINC00351|NR_046989.1	+	85363602,85533075,85542237,85544375	85364095,85533203,85542330,85544662	0.955056
testis_male_adult_37_years	chr8	69357217	69357218	69357217	+	High_confidence	5	6	8	0.357567	2.500000	chr8	69351385	69357434	LINE|L1|L1PA3	-	chr8	69356955	69358680	STRG.147868.1	+	69356955,69358547	69357437,69358680	0.500000
testis_male_adult_37_years	chr9	117196176	117196197	117196196	-	RAMPAGE_only	3	3	7	0.312871	2.584963	chr9	117196050	117196297	SINE|MIR|MIR	+	chr9	116425227	117214553	ASTN2|ENST00000373986.7	-	116425227,116440608,116442452,116487358,116618323,116620309,116651527,116725770,116728991,116733398,116805631,116820616,116863582,116975207,116976113,116976700,117008091,117039818,117096043,117141325,117214357	116426088,116440792,116442553,116487500,116618472,116620443,116651793,116725950,116729096,116733523,116805820,116820783,116863733,116975333,116976188,116976785,117008259,117039965,117096151,117141478,117214553	0.714286
testis_male_adult_37_years	chr1	188013394	188013413	188013394	+	High_confidence	2	2	9	0.402263	2.947703	chr1	188012480	188013856	LTR|ERV1|LTR12C	-	chr1	188013641	188144763	AL136372.2|ENST00000648838.1	+	188013641,188042891,188097138,188143896	188013999,188042987,188097218,188144763	1.000000
testis_male_adult_37_years	chr12	121209888	121209953	121209932	-	High_confidence	14	14	48	2.145403	4.994035	chr12	121209780	121209899	SINE|Alu|AluJr	-	chr12	121162166	121210228	STRG.210620.1	-	121162166,121203497,121209848	121162417,121203600,121210228	0.937500
testis_male_adult_37_years	chr7	116181544	116181557	116181546	-	High_confidence	277	352	613	27.398582	5.508614	chr7	116181127	116182476	LTR|ERV1|LTR12C	-	chr7	116170211	116181605	STRG.136651.5	-	116170211,116181078	116170881,116181605	0.969005
testis_male_adult_37_years	chr14	88594397	88594459	88594397	+	High_confidence	50	63	273	12.201978	5.970108	chr14	88594314	88594398	DNA?|DNA?|MER134	+	chr14	88594398	88611886	ZC3H14|ENST00000318308.10	+	88594398,88596733,88607242,88609266,88609714,88610833,88611744	88595111,88596808,88607363,88609403,88609803,88610940,88611886	0.978022
testis_male_adult_37_years	chr1	83182553	83182573	83182553	-	High_confidence	2	2	11	0.491655	2.921928	chr1	83182174	83188201	LINE|L1|L1PA2	+	chr1	83180649	83183065	STRG.8471.1	-	83180649	83183065	0.818182
testis_male_adult_37_years	chr5	134611108	134611121	134611108	-	RAMPAGE_only	58	58	145	6.480904	5.470042	chr5	134610883	134611163	SINE|Alu|AluJr4	-	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.931034
testis_male_adult_37_years	chr15	81159571	81159572	81159571	+	High_confidence	45	45	46	2.056011	4.453430	chr15	81158435	81159956	LTR|ERV1|LTR12C	+	chr15	81159574	81182883	IL16|ENST00000560989.1	+	81159574,81182764	81160000,81182883	0.956522
testis_male_adult_37_years	chr13	90495930	90495984	90495983	+	High_confidence	8	8	41	1.832532	4.521829	chr13	90494636	90496238	LTR|ERV1|LTR12C	+	chr13	90495709	90499188	STRG.219300.1	+	90495709,90498209	90496392,90499188	0.951220
testis_male_adult_37_years	chr1	234474933	234474969	234474968	+	High_confidence	19	19	38	1.698444	4.604244	chr1	234474781	234476017	LINE|L1|L1MCc	+	chr1	234474953	234476078	STRG.20788.1	+	234474953	234476078	0.947368
testis_male_adult_37_years	chr12	124839728	124839732	124839731	-	RAMPAGE_only	6	6	16	0.715134	3.773557	chr12	124839074	124839686	LINE|L1|L1MB3	-	chr12	124785819	124817707	SCARB1|ENST00000544327.1	-	124785819,124787405,124795194,124800123,124807760,124810173,124811869,124814201,124814972,124817549	124786503,124787457,124795268,124800242,124807927,124810289,124811965,124814405,124815114,124817707	0.750000
testis_male_adult_37_years	chr15	48169899	48169910	48169899	-	High_confidence	7	7	18	0.804526	3.454822	chr15	48169599	48169894	SINE|Alu|AluSg7	-	chr15	48162694	48169910	MYEF2|ENST00000560157.1	-	48162694,48165932,48166120,48168630,48169844	48162893,48166026,48166128,48168839,48169910	0.944444
testis_male_adult_37_years	chr7	153433415	153433452	153433415	+	High_confidence	5	5	34	1.519660	4.415458	chr7	153433059	153433575	LTR|ERV1|LTR9	-	chr7	153433439	153433923	STRG.141026.1	+	153433439	153433923	0.852941
testis_male_adult_37_years	chr20	18379043	18379062	18379045	+	High_confidence	92	141	330	14.749644	4.532581	chr20	18379043	18379220	DNA|hAT-Charlie|MER33	+	chr20	18379048	18381484	LINC00851|NR_034167.1	+	18379048,18380778	18379069,18381484	0.993939
testis_male_adult_37_years	chr8	47941401	47941472	47941420	+	High_confidence	3	3	26	1.162093	3.934561	chr8	47941311	47941694	LTR|ERVL|MER77B	+	chr8	47941443	47942850	STRG.146555.1	+	47941443,47942229	47941686,47942850	0.807692
testis_male_adult_37_years	chr14	69214131	69214151	69214131	+	High_confidence	12	12	33	1.474964	4.760648	chr14	69213900	69214467	LINE|L1|L1MEd	-	chr14	69213572	69230585	STRG.228109.8	+	69213572,69228815,69230471	69214173,69229072,69230585	0.636364
testis_male_adult_37_years	chr9	110321318	110321332	110321322	+	RAMPAGE_only	4	4	9	0.402263	3.000000	chr9	110321245	110321504	LINE|RTE-X|L4_C_Mam	-	chr9	110405587	110411999	STRG.166481.1	+	110405587,110410073	110410027,110411999	0.555556
testis_male_adult_37_years	chr9	116567592	116567626	116567625	+	High_confidence	13	13	49	2.190099	3.773253	chr9	116567591	116567698	LINE|L2|L2a	-	chr9	116568448	116586328	AL133284.1|ENST00000423715.1	+	116568448,116578938,116581937	116568928,116579063,116586328	0.775510
testis_male_adult_37_years	chr15	77139458	77139493	77139492	-	RAMPAGE_only	5	7	15	0.670438	2.950212	chr15	77139146	77139633	DNA|TcMar-Tigger|Tigger3b	-	chr15	77108163	77252531	PEAK1|ENST00000312493.5	-	77108163,77133004,77158502,77178789,77252366	77115319,77133750,77158696,77182040,77252531	0.666667
testis_male_adult_37_years	chr6	158152834	158152835	158152834	-	RAMPAGE_only	6	6	9	0.402263	2.750000	chr6	158152532	158152945	DNA|TcMar-Tigger|Tigger3c	+	chr6	158145919	158159298	SERAC1|ENST00000607000.1	-	158145919,158148864,158150452,158155314,158158272	158146913,158148954,158150589,158155351,158159298	0.888889
testis_male_adult_37_years	chr18	9588120	9588131	9588120	-	RAMPAGE_only	4	4	14	0.625742	3.085055	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9561982	9595061	STRG.259381.4	-	9561982,9562921,9563377,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9593767,9595017	9562075,9563046,9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9593874,9595061	0.928571
testis_male_adult_37_years	chr3	127592833	127592853	127592852	+	RAMPAGE_only	3	3	9	0.402263	2.947703	chr3	127592684	127593007	LTR|ERV1|MER48	-	chr3	127598222	127622436	MCM2|ENST00000265056.11	+	127598222,127599317,127604607,127604895,127606117,127606609,127608381,127608831,127615861,127616867,127617278,127617968,127619026,127620697,127621072,127621662	127598472,127599547,127604783,127605156,127606337,127606817,127608516,127609023,127615955,127617118,127617405,127618081,127619278,127620880,127621228,127622436	0.777778
testis_male_adult_37_years	chrX	90207100	90207101	90207100	+	RAMPAGE_only	11	11	11	0.491655	3.095795	chrX	90206797	90207292	LTR|ERVL-MaLR|MLT1H	+	chrX	90234893	90235522	STRG.293887.1	+	90234893	90235522	0.818182
testis_male_adult_37_years	chr1	194358026	194358028	194358027	-	High_confidence	236	360	433	19.353321	5.528047	chr1	194357642	194358834	LTR|ERV1|LTR12C	-	chr1	194290317	194358583	STRG.17141.1	-	194290317,194292352,194299906,194354304,194357642	194291380,194292428,194300009,194354418,194358583	0.856813
testis_male_adult_37_years	chr5	17063165	17063166	17063165	+	High_confidence	119	120	131	5.855162	4.831172	chr5	17062036	17063599	LTR|ERV1|LTR12C	+	chr5	17063179	17104135	STRG.90359.2	+	17063179,17065550,17089072,17104098	17063653,17065700,17089161,17104135	0.984733
testis_male_adult_37_years	chr19	3062731	3062735	3062734	-	High_confidence	4	4	8	0.357567	2.807355	chr19	3062710	3062746	SINE|MIR|MIR3	+	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.875000
testis_male_adult_37_years	chr18	80148048	80148049	80148048	+	High_confidence	13	13	14	0.625742	3.238901	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.785714
testis_male_adult_37_years	chr4	140498459	140498501	140498471	+	High_confidence	18	18	92	4.112022	5.093190	chr4	140498434	140498501	SINE|MIR|MIRb	+	chr4	140498401	140501330	AC093671.1|ENST00000624981.1	+	140498401	140501330	0.989130
testis_male_adult_37_years	chr6	31587009	31587030	31587009	+	High_confidence	4	5	8	0.357567	2.750000	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	1.000000
testis_male_adult_37_years	chr4	187505606	187505644	187505643	-	High_confidence	13	15	106	4.737765	5.002991	chr4	187505447	187506776	LTR|ERV1|LTR12C	+	chr4	187504470	187506337	STRG.87705.1	-	187504470	187506337	0.830189
testis_male_adult_37_years	chr1	19298114	19298120	19298114	+	High_confidence	10	10	28	1.251485	4.102679	chr1	19297940	19298445	LTR|ERVL|MLT2A2	+	chr1	19297484	19305595	STRG.1864.1	+	19297484,19305210	19298412,19305595	0.785714
testis_male_adult_37_years	chr4	136099242	136099243	136099242	-	High_confidence	342	344	375	16.760959	5.765533	chr4	136098825	136099390	LTR|ERV1|LTR12D	-	chr4	136097796	136099240	AC073429.2|ENST00000569694.1	-	136097796	136099240	0.962667
testis_male_adult_37_years	chr18	34070072	34070108	34070088	-	RAMPAGE_only	3	3	12	0.536351	3.027169	chr18	34070029	34070318	SINE|Alu|AluYc	-	chr18	33851099	34048612	NOL4|NM_001198549.1	-	33851099,33883243,33943064,33957325,33958238,34019317,34048438	33853035,33883424,33943178,33957517,33958418,34019601,34048612	0.833333
testis_male_adult_37_years	chr2	233775642	233775680	233775648	+	High_confidence	11	11	48	2.145403	5.055958	chr2	233775484	233775739	LTR|ERVL-MaLR|MLT1O	-	chr2	233775649	233790121	STRG.46495.1	+	233775649,233779344,233779670,233789496,233789851	233775757,233779452,233779852,233789628,233790121	0.625000
testis_male_adult_37_years	chr4	73326049	73326052	73326049	+	High_confidence	105	108	170	7.598302	4.013237	chr4	73325854	73326478	LTR|ERV1|LTR12_	+	chr4	73325613	73358639	STRG.76129.1	+	73325613,73357611	73326496,73358639	0.964706
testis_male_adult_37_years	chr16	10428887	10428962	10428938	+	High_confidence	6	10	42	1.877227	4.292897	chr16	10428876	10429027	SINE|Alu|AluJo	-	chr16	10428900	10483638	ATF7IP2|ENST00000568027.5	+	10428900,10430610,10433524,10438100,10440363,10472109,10473478,10473922,10480878,10481835	10429016,10431455,10433649,10438235,10440462,10472183,10473534,10473989,10480964,10483638	0.952381
testis_male_adult_37_years	chr12	114621559	114621569	114621568	+	High_confidence	16	16	29	1.296181	4.606739	chr12	114621329	114621889	LTR|ERVL-MaLR|MLT1G1	+	chr12	114621760	114622922	AC010177.1|ENST00000547819.1	+	114621760,114622807	114622011,114622922	0.689655
testis_male_adult_37_years	chr8	30657022	30657030	30657029	-	High_confidence	3	3	8	0.357567	2.750000	chr8	30656840	30657035	SINE|MIR|MIRc	-	chr8	30607103	30657005	GTF2E2|ENST00000518599.5	-	30607103,30612298,30614607,30635031,30653432,30656868	30607150,30612481,30614715,30635123,30653602,30657005	1.000000
testis_male_adult_37_years	chr1	180096166	180096176	180096166	+	RAMPAGE_only	2	3	7	0.312871	2.521641	chr1	180096189	180096346	LINE|L2|L2c	+	chr1	180095146	180111031	CEP350|ENST00000496440.1	+	180095146,180095522,180096037,180098862,180110996	180095198,180095930,180096184,180098985,180111031	0.571429
testis_male_adult_37_years	chr3	165649666	165649767	165649666	+	High_confidence	4	4	33	1.474964	4.195909	chr3	165648557	165649881	LTR|ERV1|LTR12C	-	chr3	165649646	165654346	STRG.65167.1	+	165649646,165654108	165649916,165654346	0.515152
testis_male_adult_37_years	chr17	59619856	59619905	59619894	+	High_confidence	970	1086	2894	129.349910	6.054233	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.972702
testis_male_adult_37_years	chr5	173463483	173463522	173463521	+	High_confidence	19	20	85	3.799151	4.259432	chr5	173463359	173463824	LTR|ERVL-MaLR|MLT1L	+	chr5	173463499	173470515	STRG.105597.3	+	173463499,173469468	173467348,173470515	1.000000
testis_male_adult_37_years	chr14	28830182	28830204	28830182	-	High_confidence	17	17	70	3.128712	5.142394	chr14	28830132	28830430	SINE|Alu|AluY	-	chr14	28800083	28830204	LINC02281|ENST00000549013.1	-	28800083,28819599,28824855,28830125	28800209,28819677,28824947,28830204	0.714286
testis_male_adult_37_years	chr1	182929670	182929676	182929670	-	RAMPAGE_only	4	4	10	0.446959	2.641604	chr1	182929480	182929635	LINE|L2|L2a	-	chr1	182899864	182953023	SHCBP1L|ENST00000483655.5	-	182899864,182903038,182904179,182905495,182929646,182939175,182939466,182940328,182951317,182951936,182952728	182900234,182903161,182904430,182905649,182929752,182939394,182939553,182940543,182951467,182951989,182953023	0.800000
testis_male_adult_37_years	chr20	48563623	48563624	48563623	-	High_confidence	229	230	231	10.324751	5.587862	chr20	48563314	48564627	LTR|ERV1|LTR12C	-	chr20	48552161	48563628	STRG.276473.4	-	48552161	48563628	0.956710
testis_male_adult_37_years	chr13	58774112	58774113	58774112	+	High_confidence	20	20	25	1.117397	3.970176	chr13	58773220	58774427	LTR|ERV1|LTR12C	+	chr13	58774054	58810109	STRG.215662.1	+	58774054,58781208,58791517,58809871	58774432,58781380,58791613,58810109	0.960000
testis_male_adult_37_years	chr19	46350849	46350870	46350849	+	RAMPAGE_only	4	4	9	0.402263	2.750000	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.777778
testis_male_adult_37_years	chr5	109149650	109149661	109149650	+	RAMPAGE_only	14	14	28	1.251485	4.521641	chr5	109149433	109149829	DNA|TcMar-Tc2|Kanga2_a	+	chr5	109177516	109187667	FER|ENST00000513777.1	+	109177516,109180746,109186199,109187432	109177629,109180901,109186322,109187667	0.821429
testis_male_adult_37_years	chr7	130367243	130367269	130367243	+	RAMPAGE_only	2	2	11	0.491655	3.121928	chr7	130366972	130367289	LTR|ERVL-MaLR|MLT1J2	-	chr7	130363440	130368730	CPA5|ENST00000479492.1	+	130363440,130368409	130363509,130368730	0.909091
testis_male_adult_37_years	chrX	27712599	27712622	27712603	+	RAMPAGE_only	4	5	13	0.581047	3.700440	chrX	27712578	27712841	LINE|L1|L1MEf	-	chrX	27746808	27748821	DCAF8L2|ENST00000545306.2	+	27746808	27748821	1.000000
testis_male_adult_37_years	chr18	49141081	49141100	49141081	-	RAMPAGE_only	11	11	25	1.117397	4.023465	chr18	49140905	49141212	LINE|L2|L2b	+	chr18	49041473	49460641	STRG.261690.1	-	49041473,49097401,49118743,49163684,49257009,49258379,49272177,49281996,49286433,49331863,49333727,49363160,49378566,49379664,49391592,49393644,49430254,49460397	49044204,49097515,49118926,49163787,49257104,49258493,49272303,49282175,49286613,49332006,49333853,49363233,49378700,49379758,49391645,49393742,49430447,49460641	0.800000
testis_male_adult_37_years	chr17	59500022	59500063	59500022	+	High_confidence	2	2	17	0.759830	3.625000	chr17	59500000	59501165	Retroposon|SVA|SVA_D	+	chr17	59500003	59501160	STRG.256010.1	+	59500003	59501160	0.764706
testis_male_adult_37_years	chrX	99372404	99372435	99372404	+	High_confidence	16	16	42	1.877227	4.898153	chrX	99371233	99372578	LTR|ERV1|LTR12C	-	chrX	99372009	99469810	STRG.294153.1	+	99372009,99468116	99372726,99469810	0.690476
testis_male_adult_37_years	chr17	6190516	6190537	6190528	-	High_confidence	41	45	116	5.184723	5.641980	chr17	6190517	6190627	SINE|MIR|MIR	+	chr17	6189453	6190541	AC104770.1|ENST00000573698.1	-	6189453,6189724,6190453	6189554,6189860,6190541	0.862069
testis_male_adult_37_years	chr9	99665459	99665497	99665489	-	RAMPAGE_only	2	2	8	0.357567	2.500000	chr9	99665070	99666109	LINE|L2|L2a	-	chr9	99599187	99819889	STRG.165358.3	-	99599187,99662940,99718158,99805870,99819820	99600173,99663040,99718287,99805991,99819889	0.625000
testis_male_adult_37_years	chr6	39109578	39109579	39109578	-	High_confidence	7	8	9	0.402263	3.000000	chr6	39109533	39109633	LINE|L1|L1MA4A	-	chr6	39104063	39109572	SAYSD1|ENST00000373249.5	-	39104063,39109313	39105776,39109572	0.666667
testis_male_adult_37_years	chr2	122808864	122808869	122808864	-	High_confidence	3	3	8	0.357567	3.000000	chr2	122808033	122811260	LINE|L1|L1PBa1	+	chr2	122808377	122808859	STRG.35709.1	-	122808377	122808859	0.750000
testis_male_adult_37_years	chr10	6222485	6222516	6222515	-	High_confidence	2	2	6	0.268175	2.584963	chr10	6222330	6222707	LINE|L1|L1MB7	-	chr10	6220940	6221568	STRG.170142.1	-	6220940	6221568	0.500000
testis_male_adult_37_years	chr2	102910068	102910069	102910068	+	RAMPAGE_only	8	8	11	0.491655	3.321928	chr2	102909641	102914619	LTR|ERVL|HERVL-int	-	chr2	102911085	102911847	STRG.33897.1	+	102911085	102911847	0.818182
testis_male_adult_37_years	chr2	180125361	180125390	180125389	-	High_confidence	4	4	15	0.670438	3.521641	chr2	180125161	180125461	SINE|Alu|AluJb	+	chr2	180119193	180125003	STRG.40883.1	-	180119193,180123332,180124679	180119274,180123428,180125003	0.600000
testis_male_adult_37_years	chr22	33725006	33725052	33725006	+	High_confidence	26	26	108	4.827156	5.682216	chr22	33724720	33725164	LINE|L2|L2a	-	chr22	33725013	33737775	LARGE-AS1|ENST00000453336.5	+	33725013,33725611,33726115,33727490,33732255,33737563	33725101,33725756,33726197,33727588,33733685,33737775	0.870370
testis_male_adult_37_years	chr9	11893380	11893401	11893388	+	RAMPAGE_only	4	4	12	0.536351	3.277613	chr9	11890028	11893525	LINE|L1|L1PBa	-	chr9	11618339	11930939	STRG.157530.2	+	11618339,11784546,11927868	11618631,11784659,11930939	0.500000
testis_male_adult_37_years	chr1	197069448	197069451	197069450	-	High_confidence	5	12	17	0.759830	3.852169	chr1	197068989	197069653	LTR|ERV1|LTR12_	-	chr1	197069010	197069669	STRG.17330.1	-	197069010	197069669	0.882353
testis_male_adult_37_years	chr16	20736881	20736883	20736882	-	RAMPAGE_only	4	7	9	0.402263	3.169925	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	0.888889
testis_male_adult_37_years	chr3	49468637	49468666	49468637	+	High_confidence	2	2	11	0.491655	3.321928	chr3	49468531	49468836	SINE|Alu|AluSx1	-	chr3	49468702	49535618	DAG1|NM_001177643.2	+	49468702,49510418,49530796	49469055,49510819,49535618	0.818182
testis_male_adult_37_years	chr8	1506613	1506614	1506613	-	High_confidence	96	97	103	4.603677	4.632826	chr8	1506335	1507666	LTR|ERV1|LTR12C	-	chr8	1506167	1506623	STRG.141890.1	-	1506167	1506623	0.912621
testis_male_adult_37_years	chr15	86316944	86316973	86316944	-	RAMPAGE_only	38	39	98	4.380197	5.425472	chr15	86316880	86317036	SINE|tRNA|LFSINE_Vert	+	chr15	86295648	86304981	AGBL1-AS1|ENST00000564487.1	-	86295648,86299735,86304911	86297074,86299881,86304981	0.632653
testis_male_adult_37_years	chr4	150944100	150944105	150944100	-	RAMPAGE_only	6	7	14	0.625742	3.324863	chr4	150943828	150944250	LTR|ERVL-MaLR|MLT1F	+	chr4	150264530	151015267	LRBA|ENST00000510413.5	-	150264530,150277852,150282449,150285932,150302627,150310228,150315560,150321190,150325808,150349991,150415437,150435588,150436723,150467672,150471623,150487731,150490917,150588047,150590712,150599006,150683550,150735257,150761782,150798080,150806270,150808319,150817123,150828179,150831816,150844099,150844657,150848817,150849421,150850723,150851884,150867670,150868181,150870524,150871344,150872662,150893051,150896393,150897738,150900048,150905837,150906296,150908333,150908659,150914194,150915607,150916400,150916616,150921197,150928515,150928833,151014426,151015201	150265812,150278004,150282646,150286034,150302792,150310384,150315623,150321368,150325898,150350159,150415590,150435708,150436864,150467785,150471739,150487834,150491035,150588184,150590859,150599131,150683717,150735366,150761847,150798142,150806404,150808398,150817257,150828621,150831976,150844207,150844779,150848998,150849575,150850902,150852943,150867863,150868305,150870606,150871453,150872755,150893149,150896456,150897818,150900217,150905990,150906405,150908467,150908857,150914341,150915727,150916527,150916738,150921293,150928616,150929065,151014861,151015267	0.642857
testis_male_adult_37_years	chr4	112223249	112223250	112223249	+	High_confidence	11	11	13	0.581047	3.180833	chr4	112222271	112223691	LTR|ERV1|LTR12C	+	chr4	112223262	112223766	STRG.79907.1	+	112223262	112223766	0.923077
testis_male_adult_37_years	chr14	81427428	81427442	81427431	-	High_confidence	2	2	7	0.312871	2.584963	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.857143
testis_male_adult_37_years	chr19	7497449	7497450	7497449	-	High_confidence	16	16	19	0.849222	3.836592	chr19	7497376	7497451	SINE|MIR|MIRb	-	chr19	7476875	7497449	PEX11G|ENST00000593942.5	-	7476875,7478313,7482032,7485837,7489347,7490981,7497402	7477436,7478376,7482211,7486026,7489512,7491122,7497449	0.526316
testis_male_adult_37_years	chr10	118759448	118759449	118759448	-	High_confidence	33	34	34	1.519660	4.680758	chr10	118759135	118760713	LTR|ERV1|LTR12C	-	chr10	118758362	118759436	STRG.180742.8	-	118758362	118759436	0.617647
testis_male_adult_37_years	chr10	67012235	67012277	67012265	+	High_confidence	33	33	96	4.290806	5.894975	chr10	67012215	67012300	SINE|MIR|MIR3	-	chr10	67012265	67101551	LRRTM3|NR_111909.1	+	67012265,67012983,67097586	67012352,67013026,67101551	0.812500
testis_male_adult_37_years	chr6	57574311	57574313	57574311	+	High_confidence	29	52	54	2.413578	4.800999	chr6	57574165	57574489	LTR|ERV1|MER51A	+	chr6	57574766	57646816	STRG.113679.5	+	57574766,57601092,57606374,57632132,57645927	57574820,57601219,57606457,57632201,57646816	0.666667
testis_male_adult_37_years	chr2	95121537	95121558	95121537	-	High_confidence	8	8	19	0.849222	3.947703	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.736842
testis_male_adult_37_years	chr12	9167551	9167558	9167551	-	High_confidence	5	5	16	0.715134	3.373557	chr12	9167367	9167582	LINE|L1|L1PA10	-	chr12	9163716	9167533	PZP|ENST00000540995.5	-	9163716,9165138,9166051,9167500	9163789,9165367,9166199,9167533	0.562500
testis_male_adult_37_years	chr19	15835796	15835805	15835804	-	High_confidence	5	8	15	0.670438	3.664498	chr19	15835690	15836170	LTR|ERV1|LTR7C	+	chr19	15827044	15835787	LINC01764|ENST00000589310.1	-	15827044,15835526	15827224,15835787	0.933333
testis_male_adult_37_years	chr3	114380866	114380892	114380866	-	RAMPAGE_only	6	6	19	0.849222	3.641604	chr3	114380802	114381001	SINE|MIR|MIR3	+	chr3	114338652	114383641	ZBTB20|ENST00000474710.5	-	114338652,114350273,114380216,114380776,114383615	114339426,114351878,114380404,114380940,114383641	0.789474
testis_male_adult_37_years	chr16	72172330	72172331	72172330	-	High_confidence	5	5	8	0.357567	3.000000	chr16	72172283	72172590	LTR|ERVL-MaLR|MLT1I	-	chr16	72119096	72172255	PMFBP1|ENST00000237353.14	-	72119096,72119850,72122913,72123545,72124766,72125237,72125967,72128656,72129065,72130212,72130532,72132747,72136447,72136692,72139288,72140411,72150607,72154210,72164763,72171196,72172053	72119354,72120089,72122988,72123649,72124934,72125405,72126132,72128794,72129233,72130357,72130722,72132991,72136605,72136819,72139399,72140582,72150829,72154459,72164916,72171268,72172255	0.625000
testis_male_adult_37_years	chr10	59303177	59303199	59303177	-	High_confidence	4	4	16	0.715134	3.875000	chr10	59302952	59303486	LINE|L2|L2a	+	chr10	59246178	59302856	STRG.174589.8	-	59246178,59251574,59252798,59254347,59262433,59269898,59283362,59302800	59247737,59251676,59252995,59254443,59268691,59270109,59283447,59302856	0.750000
testis_male_adult_37_years	chr2	119997780	119997781	119997780	+	High_confidence	183	199	215	9.609617	5.014478	chr2	119996800	119998208	LTR|ERV1|LTR12C	+	chr2	119997741	119999480	STRG.35500.1	+	119997741	119999480	0.953488
testis_male_adult_37_years	chr2	78542038	78542064	78542038	-	High_confidence	14	16	37	1.653748	4.786426	chr2	78541256	78543178	LINE|L1|L1PBa1	+	chr2	78412792	78542285	STRG.32062.1	-	78412792,78485793,78541571	78413176,78485852,78542285	0.648649
testis_male_adult_37_years	chr8	49307110	49307111	49307110	+	High_confidence	66	67	75	3.352192	4.985029	chr8	49306339	49307632	LTR|ERV1|LTR12D	+	chr8	49307121	49307617	STRG.146365.1	+	49307121	49307617	0.933333
testis_male_adult_37_years	chr2	168430197	168430221	168430220	+	RAMPAGE_only	5	5	10	0.446959	2.947703	chr2	168430039	168430473	LTR|ERVL-MaLR|MLT1N2	+	chr2	168455861	168775137	CERS6|ENST00000305747.10	+	168455861,168547595,168561191,168630984,168691033,168694958,168715000,168717871,168765591,168769509	168456618,168547701,168561322,168631042,168691084,168695051,168715129,168717978,168765748,168775137	0.500000
testis_male_adult_37_years	chr20	17469758	17469775	17469758	+	RAMPAGE_only	3	3	7	0.312871	2.584963	chr20	17469740	17469858	SINE|MIR|MIR	-	chr20	17463432	17482287	PCSK2|ENST00000459871.1	+	17463432,17481583	17465553,17482287	0.857143
testis_male_adult_37_years	chr16	2669650	2669677	2669676	-	RAMPAGE_only	3	3	11	0.491655	2.646439	chr16	2669524	2670537	LTR|ERVK|LTR13	-	chr16	2663081	2671461	ERVK13-1|ENST00000562807.5	-	2663081,2669410,2671344	2663407,2669561,2671461	0.636364
testis_male_adult_37_years	chr1	45600428	45600453	45600438	+	RAMPAGE_only	2	3	9	0.402263	3.000000	chr1	45600220	45601560	LINE|L1|L1ME1	-	chr1	45584064	45618247	NASP|ENST00000351223.7	+	45584064,45591222,45602254,45604935,45606481,45613168,45614095,45614292,45615012,45615304,45616336,45616625,45617462,45618060	45584205,45591270,45602365,45605016,45606591,45613248,45614181,45614366,45615201,45615471,45616393,45616703,45617591,45618247	0.777778
testis_male_adult_37_years	chr3	186439253	186439272	186439253	+	RAMPAGE_only	4	4	8	0.357567	2.521641	chr3	186439154	186440358	DNA|TcMar-Tigger|Tigger3b	-	chr3	186440344	186445191	LINC02020|ENST00000414102.5	+	186440344,186440981,186444905	186440409,186441179,186445191	0.875000
testis_male_adult_37_years	chr7	43077927	43077939	43077927	+	High_confidence	2	2	8	0.357567	3.000000	chr7	43077721	43078048	LTR|ERV1|MER61A	-	chr7	43077983	43079654	STRG.130260.1	+	43077983,43079361	43078085,43079654	0.750000
testis_male_adult_37_years	chr3	149222070	149222078	149222077	-	High_confidence	8	9	14	0.625742	3.521641	chr3	149222056	149222177	LINE|L2|L2b	+	chr3	149172498	149222055	CP|ENST00000264613.10	-	149172498,149176249,149177839,149178414,149179555,149182004,149183465,149185238,149186519,149188051,149198366,149199711,149202101,149206167,149207362,149209210,149210166,149212450,149221646	149173730,149176412,149177979,149178631,149179662,149182133,149183605,149185446,149186732,149188202,149198578,149199864,149202241,149206339,149207617,149209384,149210379,149212698,149222055	0.857143
testis_male_adult_37_years	chr13	47946049	47946072	47946049	+	RAMPAGE_only	3	3	9	0.402263	2.500000	chr13	47945691	47946353	DNA|TcMar-Tigger|MER44D	+	chr13	47955997	47956392	STRG.214499.1	+	47955997	47956392	0.777778
testis_male_adult_37_years	chr21	17689613	17689653	17689630	+	RAMPAGE_only	9	9	42	1.877227	4.863292	chr21	17685311	17689960	LINE|L1|L1PB1	-	chr21	17690769	17692583	STRG.279021.1	+	17690769	17692583	0.571429
testis_male_adult_37_years	chr10	89829610	89829623	89829610	+	High_confidence	3	3	8	0.357567	2.500000	chr10	89829592	89829906	LTR|ERVL|ERVL-E-int	+	chr10	89829555	89840861	LINC00865|ENST00000448490.1	+	89829555,89835200,89837217	89829745,89835257,89840861	0.500000
testis_male_adult_37_years	chr14	73888270	73888271	73888270	+	High_confidence	9	9	9	0.402263	2.947703	chr14	73887908	73888375	LINE|L2|L2	-	chr14	73888249	73904035	ZNF410|ENST00000554582.5	+	73888249,73892026,73893796,73896347,73898070,73903959	73888364,73892208,73893932,73896534,73898262,73904035	0.777778
testis_male_adult_37_years	chr11	44919627	44919651	44919650	+	High_confidence	5	5	9	0.402263	2.750000	chr11	44919575	44919736	SINE|MIR|MIRc	-	chr11	44919665	44929456	TSPAN18|ENST00000517621.5	+	44919665,44925716,44926673,44929130	44919999,44925799,44926757,44929456	0.888889
testis_male_adult_37_years	chr14	55255242	55255300	55255242	-	High_confidence	13	13	48	2.145403	4.847053	chr14	55255169	55255312	DNA|hAT-Blackjack|MER63A	+	chr14	55246201	55255285	STRG.226537.1	-	55246201,55255014	55249411,55255285	0.854167
testis_male_adult_37_years	chr12	49279736	49279765	49279764	+	RAMPAGE_only	6	6	17	0.759830	3.875000	chr12	49279705	49280048	LTR|ERVL-MaLR|MLT1L	+	chr12	49293251	49293997	PRPH|ENST00000551194.1	+	49293251,49293723	49293541,49293997	0.529412
testis_male_adult_37_years	chr21	22984472	22984488	22984483	-	High_confidence	76	93	198	8.849787	5.588860	chr21	22984210	22984555	LTR|ERVL-MaLR|THE1D	-	chr21	22958966	22984777	STRG.279609.2	-	22958966,22984292	22966348,22984777	0.737374
testis_male_adult_37_years	chr3	116921433	116921445	116921439	+	High_confidence	112	123	195	8.715699	6.127928	chr3	116921325	116921598	DNA|DNA|UCON78	+	chr3	116921430	116932238	LINC00901|NR_121607.1	+	116921430,116930916	116921560,116932238	0.882051
testis_male_adult_37_years	chr19	55257674	55257680	55257674	-	High_confidence	13	14	22	0.983310	3.975418	chr19	55257534	55257831	LINE|L2|L2c	+	chr19	55229778	55258670	PPP6R1|NM_014931.3	-	55229778,55230612,55230773,55231409,55231597,55231801,55232074,55236642,55236912,55239404,55239593,55239825,55239998,55240235,55240944,55241238,55241476,55242165,55242375,55245119,55245264,55245491,55246876,55258434	55230531,55230684,55230884,55231491,55231668,55231982,55232211,55236821,55236970,55239502,55239683,55239911,55240114,55240300,55241079,55241391,55241639,55242279,55242488,55245185,55245402,55245678,55247109,55258670	0.863636
testis_male_adult_37_years	chr21	24840544	24840575	24840549	+	High_confidence	8	8	23	1.028006	3.658993	chr21	24839625	24840646	LTR|ERV1|LTR12D	-	chr21	24840549	25057746	LINC01692|ENST00000441009.1	+	24840549,24844778,25029783,25055433	24840728,24844929,25029859,25057746	0.565217
testis_male_adult_37_years	chr16	81664297	81664347	81664343	+	RAMPAGE_only	6	9	33	1.474964	3.887199	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81651190	81709957	STRG.248601.4	+	81651190,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81651427,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81709957	0.818182
testis_male_adult_37_years	chr22	26532705	26532715	26532705	-	RAMPAGE_only	5	5	10	0.446959	3.169925	chr22	26532568	26532679	SINE|MIR|MIR3	-	chr22	26525745	26565368	TPST2|ENST00000398110.6	-	26525745,26528213,26532694,26536287,26540788,26544603,26565223	26526267,26528262,26532745,26536486,26541718,26544675,26565368	0.900000
testis_male_adult_37_years	chr4	65241803	65241820	65241813	-	High_confidence	11	14	49	2.190099	4.787782	chr4	65241173	65242746	LTR|ERV1|MER52A	-	chr4	65225866	65241814	AC018683.1|ENST00000649562.1	-	65225866,65238383,65241181	65226010,65238464,65241814	0.979592
testis_male_adult_37_years	chr8	116905898	116905899	116905898	+	RAMPAGE_only	4	4	7	0.312871	2.584963	chr8	116905719	116906141	LTR|ERVL|MLT2A2	+	chr8	116938198	116944487	AARD|ENST00000378279.3	+	116938198,116942557	116938567,116944487	0.714286
testis_male_adult_37_years	chr13	32490119	32490137	32490136	-	High_confidence	5	8	21	0.938614	3.984184	chr13	32489987	32490173	LINE|L2|L2a	+	chr13	32432786	32490140	N4BP2L2|ENST00000503296.6	-	32432786,32436360,32438651,32442387,32477886,32480589,32490091	32432972,32436405,32438737,32444126,32478048,32480637,32490140	0.904762
testis_male_adult_37_years	chr1	113767974	113767996	113767974	-	High_confidence	3	3	9	0.402263	2.750000	chr1	113767523	113768140	LINE|L1|L1MB2	+	chr1	113766144	113768034	RSBN1|ENST00000369581.2	-	113766144,113767098,113767954	113766453,113767207,113768034	0.666667
testis_male_adult_37_years	chr3	109316356	109316480	109316439	-	High_confidence	10	10	68	3.039321	5.699623	chr3	109316062	109316450	SINE|Alu|AluJr	-	chr3	109293787	109316517	DPPA2|ENST00000478945.1	-	109293787,109300370,109304474,109308031,109309025,109309169,109312544,109314509,109316283	109294004,109300435,109304670,109308293,109309079,109309330,109312692,109314555,109316517	0.941176
testis_male_adult_37_years	chr10	2189482	2189512	2189491	-	High_confidence	5	5	22	0.983310	4.021928	chr10	2189194	2189784	LTR|ERV1|LTR10C	+	chr10	2169139	2189474	AL441943.3|ENST00000418524.6	-	2169139,2172739,2176342,2187656,2189461	2169252,2172834,2176432,2187932,2189474	0.681818
testis_male_adult_37_years	chr15	34988764	34988792	34988791	-	High_confidence	11	11	36	1.609052	4.477025	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.750000
testis_male_adult_37_years	chr2	191245199	191245219	191245218	+	High_confidence	4	4	11	0.491655	2.721928	chr2	191245108	191245343	LINE|L1|L1M4b	+	chr2	191245184	191346274	MYO1B|ENST00000418908.5	+	191245184,191276886,191296110,191329934,191341460,191346235	191245257,191277030,191296226,191330029,191341565,191346274	0.818182
testis_male_adult_37_years	chr2	11426396	11426426	11426412	-	High_confidence	18	18	82	3.665063	4.723162	chr2	11426226	11426640	LTR|ERV1|MER48	+	chr2	11423406	11426538	STRG.24049.2	-	11423406,11424371	11424259,11426538	0.951220
testis_male_adult_37_years	chr11	102010659	102010670	102010669	+	RAMPAGE_only	3	3	10	0.446959	2.725481	chr11	102010437	102010735	SINE|Alu|AluSx1	+	chr11	102047437	102084560	C11orf70|NM_032930.2	+	102047437,102047814,102058879,102066484,102075872,102081214,102083070	102047580,102047896,102058955,102066651,102076045,102081281,102084560	0.900000
testis_male_adult_37_years	chr7	154928503	154928504	154928503	+	High_confidence	10	10	11	0.491655	3.121928	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.818182
testis_male_adult_37_years	chrX	53546444	53546490	53546444	-	RAMPAGE_only	9	9	28	1.251485	4.315824	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53532148	53548052	STRG.291784.8	-	53532148,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546808,53548052	0.857143
testis_male_adult_37_years	chr4	141333511	141333534	141333512	+	High_confidence	3	5	9	0.402263	3.169925	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141332659	141334201	STRG.83183.1	+	141332659	141334201	0.666667
testis_male_adult_37_years	chr14	18959102	18959139	18959138	+	RAMPAGE_only	3	3	9	0.402263	3.169925	chr14	18958842	18959999	LINE|L1|L1MA6	-	chr14	18944198	18967017	STRG.221886.4	+	18944198,18954744,18959229	18952446,18957387,18967017	1.000000
testis_male_adult_37_years	chr20	45792180	45792193	45792180	+	High_confidence	5	7	25	1.117397	4.243856	chr20	45792230	45792444	SINE|MIR|MIR	+	chr20	45792054	45811427	DNTTIP1|ENST00000456939.5	+	45792054,45792676,45793920,45801073,45801401,45801998,45803332,45805145,45805305,45809113,45810884,45811056	45792109,45792747,45794017,45801142,45801458,45802057,45803378,45805204,45805366,45809185,45810940,45811427	0.600000
testis_male_adult_37_years	chr3	10008602	10008626	10008625	-	High_confidence	4	5	8	0.357567	3.000000	chr3	10008574	10008675	SINE|MIR|MIRb	-	chr3	10007343	10008480	AC022007.1|ENST00000621000.1	-	10007343,10008403	10007623,10008480	1.000000
testis_male_adult_37_years	chr8	18848448	18848449	18848448	-	RAMPAGE_only	9	11	12	0.536351	2.663533	chr8	18848357	18848497	SINE|5S-Deu-L2|AmnSINE1	+	chr8	18800996	18854336	PSD3|ENST00000518303.5	-	18800996,18804521,18804703,18854097	18801382,18804602,18804898,18854336	0.583333
testis_male_adult_37_years	chr6	10481968	10481969	10481968	-	High_confidence	126	126	135	6.033945	6.156457	chr6	10481698	10483280	LTR|ERV1|LTR12C	-	chr6	10473035	10481981	STRG.107667.2	-	10473035,10478340,10481565	10474593,10478541,10481981	0.903704
testis_male_adult_37_years	chr3	177808244	177808245	177808244	-	High_confidence	146	146	159	7.106647	5.641870	chr3	177807826	177809460	LTR|ERV1|LTR12C	-	chr3	177807798	177808287	STRG.66594.1	-	177807798	177808287	0.955975
testis_male_adult_37_years	chr2	122466032	122466057	122466056	+	High_confidence	6	6	15	0.670438	3.773557	chr2	122465931	122466570	LTR|ERVL-MaLR|MLT1F2	-	chr2	122466067	122466814	STRG.35663.1	+	122466067	122466814	0.933333
testis_male_adult_37_years	chr12	109881399	109881415	109881407	-	High_confidence	3	3	12	0.536351	3.418296	chr12	109881109	109881661	LTR|ERV1|MER51B	+	chr12	109852554	109881407	STRG.209343.4	-	109852554,109855618,109857525,109858682,109880909,109881360	109852737,109855769,109857659,109858741,109881114,109881407	0.500000
testis_male_adult_37_years	chr4	127497233	127497234	127497233	-	High_confidence	61	61	85	3.799151	5.305859	chr4	127496805	127497530	LTR|ERV1|LTR12	-	chr4	127496755	127497235	STRG.81694.2	-	127496755	127497235	0.905882
testis_male_adult_37_years	chr22	25212560	25212593	25212571	+	RAMPAGE_only	20	21	81	3.620367	5.109904	chr22	25212608	25212846	LTR|ERVL|LTR16C	+	chr22	25219521	25231869	CRYBB2|ENST00000398215.2	+	25219521,25221403,25224917,25227852,25229435,25231603	25219666,25221483,25225036,25227985,25229578,25231869	0.629630
testis_male_adult_37_years	chr1	91952194	91952199	91952194	+	High_confidence	6	9	14	0.625742	3.546594	chr1	91952143	91952350	LINE|L2|L2c	-	chr1	91952161	92014421	BRDT|ENST00000402388.1	+	91952161,91962717,91964626,91968145,91976265,91977042,91978167,91979568,91980642,91980888,91981267,91981617,91991183,91992263,91994082,92002048,92004413,92005118,92014205	91952258,91962946,91964764,91968260,91976438,91977393,91978296,91979757,91980815,91981178,91981381,91981755,91991245,91992314,91994254,92002149,92004619,92005299,92014421	0.857143
testis_male_adult_37_years	chrX	43604267	43604270	43604267	+	High_confidence	14	16	25	1.117397	4.403856	chrX	43604087	43604523	LTR|ERVL|MLT2F	+	chrX	43604229	43605419	STRG.290945.1	+	43604229	43605419	0.960000
testis_male_adult_37_years	chr6	26956526	26956589	26956553	-	High_confidence	30	49	110	4.916548	5.932721	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.672727
testis_male_adult_37_years	chr1	6200609	6200658	6200657	-	High_confidence	13	15	62	2.771145	4.266643	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	0.983871
testis_male_adult_37_years	chr11	13487341	13487382	13487381	+	High_confidence	8	8	24	1.072701	3.882045	chr11	13487254	13487432	LTR|ERV1|LTR12D	-	chr11	13486813	13489760	STRG.183971.1	+	13486813,13487625	13486879,13489760	0.833333
testis_male_adult_37_years	chr2	142748927	142748931	142748930	+	RAMPAGE_only	5	5	14	0.625742	3.664498	chr2	142748611	142749226	LTR|ERV1|LTR9D	-	chr2	142877497	143055832	KYNU|ENST00000264170.8	+	142877497,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142877736,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143055832	0.500000
testis_male_adult_37_years	chr2	33600749	33600791	33600788	+	High_confidence	8	8	31	1.385573	4.671781	chr2	33600767	33600902	SINE|MIR|MIRb	-	chr2	33600478	33656191	STRG.27006.1	+	33600478,33610774,33655759	33600838,33610912,33656191	0.645161
testis_male_adult_37_years	chr2	233311503	233311522	233311503	+	RAMPAGE_only	3	3	19	0.849222	3.836592	chr2	233311275	233311611	LTR|ERVL-MaLR|MLT1L	-	chr2	233307931	233347055	SAG|ENST00000412969.6	+	233307931,233309161,233316074,233318750,233322945,233327120,233329492,233331639,233334961,233338675,233340454,233342270,233346402,233346806	233308022,233309279,233316135,233318795,233323005,233328613,233329577,233331712,233335099,233338753,233340478,233342326,233346412,233347055	0.684211
testis_male_adult_37_years	chr1	156956425	156956448	156956425	-	RAMPAGE_only	2	2	7	0.312871	2.521641	chr1	156956117	156956414	SINE|Alu|AluSx	-	chr1	156935523	157045073	ARHGEF11|ENST00000361409.2	-	156935523,156936815,156937248,156938417,156939547,156940206,156941371,156941863,156942689,156943934,156944357,156945018,156946044,156946661,156946935,156947303,156947768,156948180,156948318,156951572,156954891,156955702,156956419,156957791,156958741,156959045,156960417,156961676,156963202,156963519,156967986,156969281,156969997,156976982,156978203,156979228,156980436,156984338,156986081,157044298	156936058,156937005,156937496,156938513,156939910,156940425,156941433,156941989,156942780,156944102,156944433,156945197,156946162,156946787,156947015,156947450,156947956,156948228,156948498,156951699,156954921,156955799,156956564,156957815,156958864,156959142,156960460,156961775,156963304,156963594,156968124,156969358,156970043,156977054,156978382,156979286,156980486,156984437,156986173,157045073	1.000000
testis_male_adult_37_years	chr1	29166059	29166060	29166059	-	RAMPAGE_only	9	9	14	0.625742	3.378783	chr1	29165912	29166153	SINE|tRNA-RTE|MamSINE1	-	chr1	29154696	29160563	SRSF4|ENST00000497015.5	-	29154696,29159373,29160374	29154910,29159486,29160563	0.500000
testis_male_adult_37_years	chr9	93015050	93015067	93015066	+	RAMPAGE_only	11	13	39	1.743140	4.629249	chr9	93014932	93015159	LINE|L1|L1ME1	-	chr9	92975249	93036236	FGD3|ENST00000467786.1	+	92975249,92976207,93002924,93004000,93006023,93010245,93011213,93013851,93015736,93018135,93019830,93020316,93022326,93029873,93032768,93035337	92975405,92976709,93003014,93004137,93006180,93010384,93011272,93013998,93015829,93018215,93019861,93020424,93022389,93029996,93034681,93036236	0.846154
testis_male_adult_37_years	chr22	26860552	26860555	26860552	+	RAMPAGE_only	246	256	374	16.716263	7.171498	chr22	26860295	26860755	LTR|ERV1|LTR12_	+	chr22	26858633	26865786	LINC01422|ENST00000434868.1	+	26858633,26861981,26862256	26861022,26862105,26865786	0.671123
testis_male_adult_37_years	chr2	38515631	38515746	38515665	-	High_confidence	13	15	93	4.156718	4.992438	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.709677
testis_male_adult_37_years	chr15	48789291	48789319	48789291	-	High_confidence	32	40	155	6.927863	5.485807	chr15	48789209	48789255	LINE|L2|L2a	-	chr15	48783982	48789322	CEP152|ENST00000558337.1	-	48783982,48788800,48789237	48784120,48789001,48789322	0.851613
testis_male_adult_37_years	chr4	70133546	70133579	70133570	+	High_confidence	2	3	9	0.402263	2.725481	chr4	70133589	70133920	DNA|hAT-Charlie|MER1B	+	chr4	70133603	70146704	CSN1S2BP|NR_033311.1	+	70133603,70136047,70139908,70141391,70141507,70142427,70143163,70146619	70133660,70136072,70139935,70141415,70141552,70142553,70143206,70146704	0.555556
testis_male_adult_37_years	chr7	124288840	124288862	124288840	-	High_confidence	6	6	23	1.028006	4.142915	chr7	124288748	124288863	LINE|L2|L2c	+	chr7	124274711	124288845	STRG.137835.1	-	124274711,124288798	124274998,124288845	0.826087
testis_male_adult_37_years	chr14	93909155	93909177	93909165	-	High_confidence	15	20	45	2.011315	4.652391	chr14	93908858	93909366	LTR|ERVL-MaLR|MLT1F1	-	chr14	93904496	93909158	STRG.230781.1	-	93904496,93907969,93908918	93905388,93908112,93909158	0.888889
testis_male_adult_37_years	chr5	89313269	89313277	89313269	+	High_confidence	4	4	12	0.536351	3.277613	chr5	89313264	89313516	SINE|MIR|MIR	+	chr5	89312929	89313982	STRG.96417.1	+	89312929	89313982	0.666667
testis_male_adult_37_years	chr8	61825208	61825255	61825211	-	High_confidence	8	8	49	2.190099	4.676462	chr8	61825148	61825291	LTR|ERVL-MaLR|MLT1E1	+	chr8	61821480	61825252	AC025524.1|ENST00000518489.1	-	61821480,61825009	61821843,61825252	0.693878
testis_male_adult_37_years	chr3	78850084	78850119	78850084	-	RAMPAGE_only	12	12	65	2.905233	5.422067	chr3	78849877	78850218	DNA|TcMar-Tigger|Tigger3a	+	chr3	78598810	79018544	ROBO1|ENST00000467549.5	-	78598810,78600112,78606732,78614647,78617634,78627320,78631160,78633934,78635772,78639743,78646147,78651731,78657097,78659685,78661029,78661992,78667882,78668133,78668483,78670095,78685745,78688647,78693347,78714396,78717274,78717762,78746742,78938600,79018406	78598927,78600309,78607041,78614800,78618041,78627569,78631305,78634042,78635943,78639898,78646190,78651929,78657269,78659807,78661261,78662114,78668049,78668302,78668565,78670301,78685917,78688772,78693356,78714524,78717413,78717883,78746900,78938927,79018544	0.892308
testis_male_adult_37_years	chr1	101871984	101872025	101871984	+	High_confidence	8	8	36	1.609052	4.786426	chr1	101871919	101872196	LINE|L2|L2c	-	chr1	101872011	101894743	DNAJA1P5|NR_033424.2	+	101872011,101893056	101872105,101894743	0.666667
testis_male_adult_37_years	chr15	70297856	70297900	70297885	-	High_confidence	17	18	70	3.128712	4.517502	chr15	70297648	70297888	SINE|MIR|MIR	+	chr15	70296066	70298206	STRG.237440.1	-	70296066,70297797	70296323,70298206	0.957143
testis_male_adult_37_years	chr8	20973948	20973973	20973948	+	High_confidence	39	39	138	6.168033	4.876915	chr8	20973910	20974063	DNA|hAT-Tip100|MER96	+	chr8	20973796	20975029	LINC02153|ENST00000517573.1	+	20973796,20974803	20974522,20975029	0.992754
testis_male_adult_37_years	chrX	151717029	151717040	151717029	+	High_confidence	3	3	9	0.402263	2.725481	chrX	151716453	151717031	LINE|L2|L2a	+	chrX	151716143	151722788	FATE1|ENST00000417321.1	+	151716143,151717271,151721902,151722627	151716225,151717399,151721981,151722788	0.666667
testis_male_adult_37_years	chr18	66005291	66005325	66005291	-	High_confidence	76	77	122	5.452899	4.375718	chr18	66004906	66006519	LTR|ERV1|LTR12C	-	chr18	66002627	66005348	STRG.263370.1	-	66002627,66004888	66004335,66005348	0.885246
testis_male_adult_37_years	chr7	72412340	72412341	72412340	-	High_confidence	361	372	425	18.995754	6.788404	chr7	72412058	72412621	LTR|ERV1|LTR12_	-	chr7	72361569	72412373	STRG.132321.6	-	72361569,72409579	72409329,72412373	0.851765
testis_male_adult_37_years	chr9	76478161	76478162	76478161	+	High_confidence	58	58	68	3.039321	4.996009	chr9	76477878	76478576	LTR|ERV1|LTR12_	+	chr9	76477551	76507277	STRG.162594.4	+	76477551,76500915,76502238	76478530,76501061,76507277	0.676471
testis_male_adult_37_years	chr8	144427274	144427275	144427274	-	High_confidence	7	8	11	0.491655	2.732159	chr8	144427020	144427326	SINE|Alu|AluSx	+	chr8	144424964	144427294	VPS28|ENST00000531924.1	-	144424964,144425682,144426025,144426908	144425000,144425772,144426208,144427294	0.909091
testis_male_adult_37_years	chr8	24524936	24524966	24524965	+	High_confidence	11	11	49	2.190099	5.027875	chr8	24524942	24525058	LTR|Gypsy?|LTR88b	-	chr8	24524960	24526970	STRG.144304.1	+	24524960,24526754	24525060,24526970	0.836735
testis_male_adult_37_years	chr1	100268235	100268284	100268280	+	RAMPAGE_only	11	11	61	2.726449	4.411080	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266288	100292769	STRG.10391.3	+	100266288,100266523,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100292769	0.950820
testis_male_adult_37_years	chr5	170267210	170267211	170267210	-	High_confidence	12	12	15	0.670438	3.378783	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.933333
testis_male_adult_37_years	chr7	112452414	112452425	112452416	+	High_confidence	4	8	18	0.804526	4.058814	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112477203	IFRD1|NM_001197079.1	+	112452057,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112452511,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112477203	0.888889
testis_male_adult_37_years	chr14	58439701	58439719	58439701	+	High_confidence	29	30	79	3.530975	5.646614	chr14	58439673	58439793	LINE|L2|L2c	-	chr14	58439680	58537213	KIAA0586|NM_001244193.1	+	58439680,58442705,58443953,58448339,58450578,58453349,58456701,58457758,58458472,58459842,58460985,58465834,58467734,58470612,58472198,58474606,58477122,58482512,58487006,58487886,58488620,58490163,58492143,58498782,58508554,58512521,58537006	58439780,58442880,58444175,58448493,58450746,58453473,58456810,58457979,58458545,58460070,58461160,58466029,58467922,58470723,58472279,58474797,58477241,58482712,58487166,58488109,58488874,58490240,58492275,58498960,58508709,58512627,58537213	0.936709
testis_male_adult_37_years	chr20	10908011	10908013	10908011	+	RAMPAGE_only	2	4	6	0.268175	2.584963	chr20	10907856	10908160	LTR|ERVL-MaLR|MLT1A	+	chr20	10902283	10914535	AL050403.2|ENST00000603462.1	+	10902283,10908825,10909155,10913007,10914403	10902302,10908879,10909289,10913160,10914535	0.666667
testis_male_adult_37_years	chr13	93234111	93234153	93234111	-	High_confidence	3	3	12	0.536351	2.550341	chr13	93233867	93234391	LTR|ERVL?|LTR55	+	chr13	93233803	93234128	STRG.219507.1	-	93233803	93234128	0.500000
testis_male_adult_37_years	chr15	78660533	78660573	78660572	-	High_confidence	6	6	24	1.072701	4.251629	chr15	78660457	78660683	SINE|MIR|MIRb	-	chr15	78629352	78660532	CHRNB4|ENST00000559849.5	-	78629352,78630927,78631287,78634621,78635438,78649378,78652577,78655543,78656211,78657331,78658279,78660511	78629945,78631185,78631332,78634739,78635587,78649439,78652671,78655663,78656690,78657383,78658369,78660532	0.833333
testis_male_adult_37_years	chr5	33297923	33297960	33297923	-	High_confidence	2	3	16	0.715134	3.625000	chr5	33297738	33298188	LTR|ERV1|MER48	-	chr5	33023054	33297910	AC010343.3|ENST00000510327.1	-	33023054,33263499,33297731	33023327,33263666,33297910	0.625000
testis_male_adult_37_years	chr2	19711671	19711720	19711719	+	High_confidence	29	29	177	7.911173	4.719150	chr2	19711592	19711745	DNA|DNA|UCON78	+	chr2	19711714	19717576	AC019055.1|ENST00000432822.1	+	19711714,19717261	19711842,19717576	0.875706
testis_male_adult_37_years	chr14	29666082	29666142	29666082	-	High_confidence	3	5	22	0.983310	3.720129	chr14	29665934	29666040	LINE|L1|L1PB3	-	chr14	29638295	29666158	PRKD1|ENST00000468370.5	-	29638295,29638693,29656475,29663698,29666076	29638566,29638904,29656499,29663859,29666158	0.772727
testis_male_adult_37_years	chr9	115290734	115290794	115290734	+	High_confidence	4	5	23	1.028006	3.740953	chr9	115290669	115290906	LTR|ERVL-MaLR|MLT1J1	+	chr9	115290796	115314480	DEC1|ENST00000477580.5	+	115290796,115291781,115305905,115312211	115290937,115291936,115305996,115314480	1.000000
testis_male_adult_37_years	chr11	13419666	13419730	13419729	-	RAMPAGE_only	4	5	13	0.581047	3.418296	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13388701	13426373	STRG.184169.4	-	13388701,13403167,13404559,13405658,13413529,13417157,13419459,13421641	13389141,13403278,13404655,13405856,13413650,13417260,13419745,13426373	0.923077
testis_male_adult_37_years	chr6	147422121	147422145	147422144	-	RAMPAGE_only	3	3	8	0.357567	2.500000	chr6	147421859	147422212	LINE|L2|L2a	+	chr6	147397163	147408233	STRG.122936.1	-	147397163,147407388,147408155	147397639,147407578,147408233	0.500000
testis_male_adult_37_years	chr16	21704979	21704984	21704983	+	High_confidence	5	5	14	0.625742	3.467720	chr16	21704651	21705137	LTR|ERV1|LTR45B	-	chr16	21704969	21760723	STRG.244153.1	+	21704969,21709887,21714984,21716906,21719132,21719386,21722904,21726522,21728240,21730836,21736260,21740720,21744880,21751934,21752368,21753026,21757081,21760469	21705292,21710103,21715152,21717047,21719191,21719504,21722978,21726658,21728431,21730930,21736390,21740908,21745036,21752077,21752505,21753124,21757277,21760723	1.000000
testis_male_adult_37_years	chr16	58401675	58401684	58401683	+	RAMPAGE_only	3	5	8	0.357567	2.500000	chr16	58401084	58401701	LTR|ERV1|LTR12_	-	chr16	58400577	58405481	STRG.246655.4	+	58400577,58403097,58404498	58401843,58403331,58405481	1.000000
testis_male_adult_37_years	chr5	34244778	34244816	34244780	-	High_confidence	20	34	82	3.665063	5.191883	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244796	STRG.92301.11	-	34175821,34179012,34182679,34200820,34218294,34239374,34244615	34175957,34179097,34182867,34200921,34218450,34239448,34244796	0.841463
testis_male_adult_37_years	chr6	26123039	26123078	26123047	-	High_confidence	24	24	40	1.787836	4.562815	chr6	26122928	26123343	LTR|ERV1|MER101	-	chr6	26114872	26123910	HIST1H2BC|ENST00000314332.5	-	26114872,26123514	26115135,26123910	0.500000
testis_male_adult_37_years	chr12	9739473	9739484	9739473	+	High_confidence	2	2	7	0.312871	2.521641	chr12	9738753	9740142	LTR|ERV1|LTR12C	-	chr12	9739422	9741000	STRG.198307.1	+	9739422	9741000	0.714286
testis_male_adult_37_years	chr4	36641899	36641911	36641899	-	High_confidence	50	61	141	6.302121	5.514375	chr4	36641714	36642024	SINE|Alu|AluY	+	chr4	36496536	36641900	LINC02505|ENST00000510597.5	-	36496536,36498426,36582656,36615453,36641849	36497052,36498488,36582730,36615526,36641900	0.666667
testis_male_adult_37_years	chr16	67183286	67183333	67183308	-	High_confidence	4	4	18	0.804526	3.614369	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67176729	67183941	KIAA0895L|ENST00000563902.1	-	67176729,67178009,67178198,67179429,67179814,67180040,67183261	67176975,67178107,67178504,67179562,67179958,67180666,67183941	0.666667
testis_male_adult_37_years	chr18	9132779	9132780	9132779	-	High_confidence	9	9	14	0.625742	3.546594	chr18	9132594	9132890	SINE|Alu|AluJb	+	chr18	9121276	9133422	NDUFV2-AS1|ENST00000583081.1	-	9121276,9132222,9133390	9121456,9132409,9133422	0.642857
testis_male_adult_37_years	chr7	84978805	84978819	84978814	+	RAMPAGE_only	3	3	10	0.446959	2.725481	chr7	84978326	84981881	LINE|L1|L1PBa1	-	chr7	84983555	84984506	HNRNPA1P8|ENST00000436090.1	+	84983555	84984506	0.900000
testis_male_adult_37_years	chr17	7100295	7100364	7100295	-	High_confidence	14	14	89	3.977934	5.208460	chr17	7099932	7101093	LTR|ERV1|LTR12C	-	chr17	7099794	7100842	STRG.250849.1	-	7099794	7100842	0.966292
testis_male_adult_37_years	chr11	17282810	17282822	17282810	+	RAMPAGE_only	14	17	28	1.251485	4.494680	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.964286
testis_male_adult_37_years	chr1	228194687	228194716	228194715	+	High_confidence	9	9	18	0.804526	4.169925	chr1	228194570	228194729	DNA|hAT-Charlie|Charlie1b	-	chr1	228194086	228201735	STRG.20193.4	+	228194086,228197567	228194767,228201735	0.944444
testis_male_adult_37_years	chr12	104286689	104286707	104286706	+	High_confidence	8	8	14	0.625742	3.235926	chr12	104286543	104286715	DNA|hAT-Charlie|MER5B	+	chr12	104286681	104350307	TXNRD1|NM_003330.3	+	104286681,104288930,104311289,104313244,104315776,104318912,104319469,104321090,104325336,104326346,104327514,104331533,104334236,104339138,104348352	104287346,104289040,104311412,104313317,104315896,104319055,104319585,104321316,104325429,104326423,104327671,104331641,104334332,104339273,104350307	1.000000
testis_male_adult_37_years	chr1	1282142	1282161	1282160	+	High_confidence	8	8	19	0.849222	3.614369	chr1	1282152	1282284	SINE|MIR|MIRb	-	chr1	1282108	1292024	SCNN1D|ENST00000325425.12	+	1282108,1283977,1285570,1285925,1286767,1287108,1287507,1287672,1287938,1290270,1290476,1290636,1290894,1291064,1291253	1282315,1284090,1285664,1286278,1286975,1287299,1287596,1287836,1288037,1290388,1290555,1290694,1290953,1291140,1292024	0.789474
testis_male_adult_37_years	chr20	20018799	20018817	20018816	+	RAMPAGE_only	8	8	14	0.625742	3.026987	chr20	20018740	20018918	SINE|MIR|MIR	-	chr20	20017794	20033629	NAA20|NM_181527.3	+	20017794,20022455,20025676,20026783,20032507,20033101	20018041,20022480,20025767,20026919,20032653,20033629	0.571429
testis_male_adult_37_years	chr1	1879903	1879907	1879906	-	RAMPAGE_only	4	4	10	0.446959	2.641604	chr1	1879727	1879914	DNA|hAT-Charlie|Charlie1	-	chr1	1793244	1890401	GNB1|ENST00000434686.6	-	1793244,1804418,1806474,1815755,1817836,1825396,1839189,1839628,1890363	1793311,1804581,1806538,1815862,1817875,1825499,1839238,1839682,1890401	0.900000
testis_male_adult_37_years	chr12	63584658	63584673	63584672	-	High_confidence	10	10	25	1.117397	4.088779	chr12	63584408	63585120	DNA|TcMar-Tigger|MER44C	+	chr12	63560195	63584162	DPY19L2|ENST00000413230.6	-	63560195,63569223,63570757,63580661,63582405,63583811	63560662,63569349,63570857,63580836,63582525,63584162	0.640000
testis_male_adult_37_years	chr11	131084298	131084312	131084298	-	High_confidence	2	2	8	0.357567	2.750000	chr11	131083660	131085142	Retroposon|SVA|SVA_A	-	chr11	131078966	131083471	STRG.196194.1	-	131078966,131083383	131079874,131083471	0.875000
testis_male_adult_37_years	chr1	51297929	51297998	51297975	-	High_confidence	9	15	45	2.011315	5.136249	chr1	51297625	51298239	LINE|L2|L2a	+	chr1	51287257	51297961	TTC39A|NM_001297666.1	-	51287257,51288838,51290004,51290513,51294390,51296078,51297790	51288280,51288955,51290119,51290625,51294511,51296170,51297961	0.844444
testis_male_adult_37_years	chr22	21660071	21660114	21660094	+	RAMPAGE_only	4	4	16	0.715134	3.625000	chr22	21660001	21660195	LINE|L1|L1MC5a	-	chr22	21657810	21661021	AP000553.5|ENST00000641967.1	+	21657810,21658265,21660836	21657972,21658389,21661021	0.687500
testis_male_adult_37_years	chr1	192987195	192987213	192987195	-	RAMPAGE_only	7	7	27	1.206789	3.576621	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192955637	192988622	STRG.16958.4	-	192955637,192986717	192957422,192988622	0.851852
testis_male_adult_37_years	chr8	30731643	30731697	30731664	+	RAMPAGE_only	8	8	38	1.698444	4.756619	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30728539	30763322	STRG.145374.2	+	30728539,30731528,30744327,30751395,30753034,30754664,30756764,30760887,30763272	30729345,30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763322	0.973684
testis_male_adult_37_years	chr19	4104881	4104903	4104902	+	High_confidence	3	3	6	0.268175	2.584963	chr19	4104831	4105010	DNA|hAT-Charlie|MER20	-	chr19	4105859	4106397	STRG.265176.1	+	4105859	4106397	0.500000
testis_male_adult_37_years	chr4	130091007	130091008	130091007	+	High_confidence	83	84	96	4.290806	5.294805	chr4	130090413	130091418	LTR|ERV1|LTR12D	+	chr4	130091222	130091434	STRG.81897.1	+	130091222	130091434	0.875000
testis_male_adult_37_years	chr19	44562832	44562833	44562832	-	High_confidence	409	540	576	25.744834	5.924314	chr19	44562417	44563770	LTR|ERV1|LTR12C	-	chr19	44561081	44562822	STRG.270406.1	-	44561081	44562822	0.972222
testis_male_adult_37_years	chr2	113980301	113980340	113980339	+	High_confidence	3	3	14	0.625742	3.026987	chr2	113980251	113980680	LTR|ERV1|MER65A	-	chr2	113979908	114007302	STRG.34908.1	+	113979908,113982663,114007018	113980404,113982763,114007302	0.857143
testis_male_adult_37_years	chr18	47668164	47668196	47668195	+	RAMPAGE_only	11	11	49	2.190099	4.610569	chr18	47668194	47668264	SINE|MIR|MIR3	-	chr18	47669451	47674123	STRG.261762.1	+	47669451,47671361,47674041	47669519,47671553,47674123	0.530612
testis_male_adult_37_years	chr16	87292434	87292449	87292434	-	High_confidence	6	9	33	1.474964	4.718488	chr16	87292123	87292641	LTR|ERVL-MaLR|MLT1F	-	chr16	87267257	87292438	AC010531.4|ENST00000569872.1	-	87267257,87291683	87268220,87292438	0.515152
testis_male_adult_37_years	chr4	158172987	158173025	158173024	-	High_confidence	39	40	66	2.949929	5.306412	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.878788
testis_male_adult_37_years	chr4	115179751	115179793	115179756	+	High_confidence	7	8	35	1.564356	3.899040	chr4	115178618	115179981	LTR|ERV1|LTR12C	-	chr4	115179319	115270467	STRG.80112.1	+	115179319,115181263,115269933	115179984,115181315,115270467	0.885714
testis_male_adult_37_years	chr4	145599052	145599083	145599052	+	High_confidence	3	3	10	0.446959	3.169925	chr4	145598693	145599103	LTR|ERVL-MaLR|MSTD	-	chr4	145599060	145655461	MMAA|ENST00000649704.1	+	145599060,145639074,145642362,145645985,145651061,145653993,145655146	145599354,145639578,145642485,145646156,145651147,145654143,145655461	0.500000
testis_male_adult_37_years	chr4	117360628	117360649	117360639	+	High_confidence	11	13	48	2.145403	4.517808	chr4	117360517	117360864	LTR|ERV1|MER50	-	chr4	117360624	117372598	LINC02263|ENST00000420701.5	+	117360624,117361400,117371591,117372363	117360809,117361506,117371662,117372598	0.895833
testis_male_adult_37_years	chrX	136222393	136222459	136222393	-	RAMPAGE_only	8	10	45	2.011315	4.815459	chrX	136222161	136222377	SINE|MIR|MIR	-	chrX	136216813	136220813	MAP7D3|ENST00000471510.1	-	136216813,136219397,136219592,136220764	136217258,136219495,136219671,136220813	0.888889
testis_male_adult_37_years	chr17	42493732	42493765	42493732	+	RAMPAGE_only	11	11	27	1.206789	4.286790	chr17	42493514	42493826	SINE|Alu|AluJr	+	chr17	42468035	42513941	STRG.253924.3	+	42468035,42470089,42477659,42478462,42480666,42483037,42487154,42490486,42494333,42495033,42495625,42498923,42500706,42501196,42507519,42513860	42468107,42470218,42477742,42478589,42480749,42483131,42487367,42490637,42494473,42495188,42495716,42499042,42500923,42501304,42507627,42513941	0.888889
testis_male_adult_37_years	chr7	145360713	145360732	145360731	+	High_confidence	4	5	11	0.491655	3.277613	chr7	145359544	145361198	LTR|ERV1|LTR12C	-	chr7	145360699	145370146	STRG.140038.1	+	145360699,145369872	145361235,145370146	0.545455
testis_male_adult_37_years	chr8	12796357	12796359	12796357	-	High_confidence	6	9	12	0.536351	3.251629	chr8	12796147	12797467	LTR|ERV1|LTR12C	+	chr8	12795712	12796692	STRG.142978.1	-	12795712	12796692	0.583333
testis_male_adult_37_years	chr7	134432378	134432436	134432378	-	High_confidence	16	16	57	2.547666	4.635264	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.824561
testis_male_adult_37_years	chr9	38604207	38604230	38604226	-	RAMPAGE_only	3	3	13	0.581047	3.392747	chr9	38604017	38604311	SINE|Alu|AluSc	+	chr9	38571363	38620363	ANKRD18A|NM_147195.2	-	38571363,38575475,38577052,38577866,38586182,38588550,38593759,38595485,38601130,38603158,38607425,38610272,38611214,38615593,38615929,38620079	38572059,38575698,38577264,38578148,38586312,38588663,38593909,38596403,38601204,38603212,38607493,38610410,38611321,38615767,38616044,38620363	0.923077
testis_male_adult_37_years	chr7	45940634	45940660	45940634	+	High_confidence	2	2	14	0.625742	3.238901	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45940359	45994630	STRG.130409.1	+	45940359,45977518,45978349,45979908,45990532	45940880,45977678,45978468,45980027,45994630	0.928571
testis_male_adult_37_years	chr21	39411091	39411139	39411091	-	High_confidence	14	16	64	2.860537	5.032560	chr21	39411027	39411386	LINE|L1|L1ME2	+	chr21	39405977	39411147	LCA5L|ENST00000495240.1	-	39405977,39409978,39410263,39411032	39406612,39410096,39410367,39411147	0.984375
testis_male_adult_37_years	chr5	151687198	151687200	151687198	-	High_confidence	3	6	8	0.357567	2.521641	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.875000
testis_male_adult_37_years	chr2	111681832	111681863	111681862	-	High_confidence	10	11	24	1.072701	4.277613	chr2	111681667	111683253	LTR|ERV1|LTR12C	+	chr2	111680036	111682160	STRG.34642.1	-	111680036	111682160	0.583333
testis_male_adult_37_years	chr3	19970527	19970579	19970578	+	RAMPAGE_only	11	11	28	1.251485	4.735926	chr3	19970315	19970700	DNA|TcMar-Tigger|Tigger12A	+	chr3	19975515	19984121	RAB5A|ENST00000473608.1	+	19975515,19976046,19978309,19983707	19975752,19976169,19978403,19984121	0.928571
testis_male_adult_37_years	chrX	141502823	141502854	141502850	+	High_confidence	6	8	20	0.893918	3.721928	chrX	141502747	141503606	LTR|ERV1|LTR17	-	chrX	141502848	141526415	STRG.297534.3	+	141502848,141503134,141514711,141520471	141503077,141503239,141514829,141526415	0.800000
testis_male_adult_37_years	chr1	17759266	17759331	17759320	+	RAMPAGE_only	6	6	43	1.921923	4.853056	chr1	17759155	17759614	LTR|ERVL|LTR41	+	chr1	17755312	17827063	ACTL8|NM_030812.2	+	17755312,17822984,17825766	17755504,17823356,17827063	0.837209
testis_male_adult_37_years	chr3	153155302	153155303	153155302	-	High_confidence	141	143	158	7.061951	5.372174	chr3	153154903	153156285	LTR|ERV1|LTR12C	-	chr3	153152389	153155344	STRG.63705.1	-	153152389,153154831	153152919,153155344	0.974684
testis_male_adult_37_years	chr3	81764763	81764774	81764763	-	RAMPAGE_only	3	3	10	0.446959	3.169925	chr3	81764582	81765043	LTR|ERVL-MaLR|MLT1C	-	chr3	81489698	81762161	GBE1|ENST00000429644.6	-	81489698,81499109,81535194,81536910,81577924,81581164,81586091,81591036,81593907,81642780,81646391,81648855,81649795,81670837,81705443,81761374	81490463,81499227,81535325,81537095,81578096,81581275,81586190,81591164,81594023,81642990,81646482,81648991,81649921,81670953,81705613,81762161	0.500000
testis_male_adult_37_years	chr12	71377225	71377229	71377228	+	High_confidence	14	16	22	0.983310	4.061482	chr12	71377133	71377608	LTR|ERV1|LTR12C	+	chr12	71377242	71377617	STRG.204860.1	+	71377242	71377617	0.727273
testis_male_adult_37_years	chr1	101639573	101639580	101639573	+	High_confidence	19	19	44	1.966619	4.943593	chr1	101639383	101639782	LTR|ERVL-MaLR|MLT1A1	+	chr1	101639585	101787572	LINC01709|ENST00000635702.1	+	101639585,101646253,101723741,101737223,101774100,101784923,101787110	101639703,101646352,101723875,101737357,101774249,101785031,101787572	0.795455
testis_male_adult_37_years	chr5	176221337	176221338	176221337	-	High_confidence	1259	1264	1354	60.518237	4.601698	chr5	176220923	176222588	LTR|ERV1|LTR12C	-	chr5	176173352	176221332	STRG.105884.5	-	176173352,176174973,176176281,176176758,176180815,176183230,176185100,176186161,176187402,176199235,176220906	176173563,176175901,176176450,176180348,176182763,176183301,176185342,176186380,176187596,176204927,176221332	0.974151
testis_male_adult_37_years	chr19	56483991	56483992	56483991	-	High_confidence	16	18	23	1.028006	3.435755	chr19	56483325	56484483	LINE|L2|L2a	+	chr19	56480396	56483977	AC004696.2|ENST00000624022.1	-	56480396,56483795	56480545,56483977	0.913043
testis_male_adult_37_years	chr13	106561950	106561951	106561950	-	High_confidence	44	44	46	2.056011	5.061482	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.913043
testis_male_adult_37_years	chr15	34964453	34964462	34964461	-	High_confidence	48	48	72	3.218104	4.851933	chr15	34964435	34964482	DNA|hAT-Charlie|MER20B	-	chr15	34944303	34964453	AQR|ENST00000560117.1	-	34944303,34948263,34952884,34960773,34964233	34944428,34948384,34952920,34960814,34964453	0.791667
testis_male_adult_37_years	chr17	36492210	36492222	36492221	+	High_confidence	14	14	25	1.117397	4.168296	chr17	36492181	36492446	SINE|Alu|AluJo	-	chr17	36492223	36495312	ZNHIT3|ENST00000612494.4	+	36492223,36492812,36493925,36495222	36492459,36492899,36494006,36495312	0.880000
testis_male_adult_37_years	chr14	94581666	94581691	94581668	+	High_confidence	4	6	22	0.983310	3.921928	chr14	94581654	94581760	SINE|MIR|MIRb	+	chr14	94581614	94593115	SERPINA5|ENST00000554276.1	+	94581614,94587345,94590040,94590748,94592056	94581710,94587981,94590311,94590896,94593115	0.909091
testis_male_adult_37_years	chr6	37822637	37822647	37822646	+	RAMPAGE_only	3	4	6	0.268175	2.584963	chr6	37822539	37822833	LINE|L2|L2b	-	chr6	37819941	38116676	ZFAND3|ENST00000474522.5	+	37819941,37929958,38003690,38061592,38082391,38116571	37820016,37929999,38003783,38061775,38082457,38116676	0.833333
testis_male_adult_37_years	chr1	77169277	77169325	77169312	-	RAMPAGE_only	4	5	11	0.491655	2.721928	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77088989	77219426	PIGK|ENST00000370812.7	-	77088989,77122274,77154448,77161294,77161593,77163845,77166718,77169259,77206639,77210435,77219309	77092490,77122359,77154621,77161405,77161711,77163942,77166830,77169395,77206731,77210489,77219426	0.909091
testis_male_adult_37_years	chr2	208615315	208615349	208615315	+	RAMPAGE_only	7	8	17	0.759830	3.969816	chr2	208615119	208615478	LTR|ERVL-MaLR|THE1B	+	chr2	208542641	208825587	LOC101927960|NR_136588.1	+	208542641,208572012,208656825,208819551,208824194,208825398	208542991,208572167,208656989,208819655,208824350,208825587	0.529412
testis_male_adult_37_years	chr19	51028003	51028034	51028020	-	High_confidence	19	31	91	4.067326	5.432030	chr19	51027996	51028297	DNA|hAT-Tip100|ORSL-2a	-	chr19	51022230	51028034	KLK11|NM_001167605.1	-	51022230,51023091,51024044,51024633,51025591,51027943	51022697,51023228,51024381,51024794,51025666,51028034	0.967033
testis_male_adult_37_years	chr15	51293863	51293979	51293920	-	RAMPAGE_only	3	3	29	1.296181	4.280395	chr15	51293534	51294998	Retroposon|SVA|SVA_D	+	chr15	51258735	51303103	STRG.235576.2	-	51258735	51303103	0.965517
testis_male_adult_37_years	chr15	29657474	29657475	29657474	-	High_confidence	74	76	105	4.693069	6.032325	chr15	29657326	29657807	LTR|ERV1|LTR12F	-	chr15	29656066	29657939	STRG.233321.5	-	29656066	29657939	0.961905
testis_male_adult_37_years	chr15	82160070	82160095	82160070	-	High_confidence	14	15	66	2.949929	4.610851	chr15	82159991	82160452	LTR|ERVL-MaLR|MLT1F	+	chr15	82152156	82160070	EFL1|ENST00000561340.1	-	82152156,82157712,82159931	82152423,82157860,82160070	0.651515
testis_male_adult_37_years	chr10	124882960	124882988	124882960	+	RAMPAGE_only	3	3	10	0.446959	2.921928	chr10	124882744	124882974	SINE|MIR|MIRc	-	chr10	124886415	124886657	STRG.181416.1	+	124886415	124886657	0.600000
testis_male_adult_37_years	chr11	44526016	44526080	44526060	-	High_confidence	5	5	32	1.430269	4.123231	chr11	44525699	44526195	LTR|ERVL|LTR33A	-	chr11	44525553	44526078	STRG.186867.1	-	44525553	44526078	0.625000
testis_male_adult_37_years	chr2	131554489	131554495	131554489	+	RAMPAGE_only	3	3	7	0.312871	2.584963	chr2	131554482	131554532	SINE|Alu|AluSz6	-	chr2	131543521	131591430	STRG.36693.3	+	131543521,131545045,131555071,131564860,131577507,131580151,131582017,131588664	131543823,131553166,131557463,131575207,131577618,131580264,131582129,131591430	0.857143
testis_male_adult_37_years	chr11	5144396	5144423	5144412	-	RAMPAGE_only	4	4	24	1.072701	4.001823	chr11	5144230	5145619	LTR|ERV1|LTR12C	+	chr11	5121154	5124513	OR52A4P|ENST00000498233.5	-	5121154,5122632,5123442,5124467	5121907,5122778,5123511,5124513	0.625000
testis_male_adult_37_years	chr11	118507901	118507923	118507911	+	High_confidence	4	4	15	0.670438	3.521641	chr11	118507682	118507980	SINE|Alu|AluY	+	chr11	118507901	118522868	KMT2A|ENST00000648565.1	+	118507901,118509135,118509947,118511950,118519617,118519956,118520801,118521287,118521896	118507972,118509200,118510118,118512025,118519792,118520064,118520885,118521417,118522868	0.933333
testis_male_adult_37_years	chr1	2814055	2814056	2814055	+	High_confidence	478	574	615	27.487973	6.479924	chr1	2813098	2814487	LTR|ERV1|LTR12C	+	chr1	2814064	2818076	STRG.127.2	+	2814064,2816278	2815357,2818076	0.957724
testis_male_adult_37_years	chr6	144349120	144349142	144349141	+	RAMPAGE_only	3	3	11	0.491655	3.095795	chr6	144349009	144349307	SINE|Alu|AluY	-	chr6	144344100	144426328	UTRN|ENST00000421035.2	+	144344100,144403122,144421877,144423548,144423985,144426286	144344304,144403184,144421970,144423626,144424078,144426328	0.727273
testis_male_adult_37_years	chr11	63616699	63616725	63616724	-	High_confidence	4	4	12	0.536351	3.459432	chr11	63616701	63616995	SINE|Alu|AluYe5	+	chr11	63574849	63616883	STRG.188169.2	-	63574849,63590099,63598060,63613999,63616586	63575046,63590368,63598163,63614068,63616883	0.666667
testis_male_adult_37_years	chr15	27161253	27161279	27161259	-	High_confidence	271	273	528	23.599431	7.126880	chr15	27161191	27161472	LTR|ERVL|LTR40a	-	chr15	27157614	27161319	GABRG3-AS1|ENST00000439938.2	-	27157614,27158265,27161021	27158155,27158396,27161319	0.615530
testis_male_adult_37_years	chr6	119201641	119201663	119201662	-	RAMPAGE_only	17	17	30	1.340877	4.280226	chr6	119201512	119201642	LINE|L2|L2a	-	chr6	119177208	119349761	MAN1A1|ENST00000368468.3	-	119177208,119180311,119188404,119189663,119193776,119201253,119204758,119248259,119290682,119301987,119306895,119348462,119349541	119179945,119180427,119188577,119189883,119193892,119201347,119204882,119248354,119290763,119302103,119306992,119349287,119349761	0.966667
testis_male_adult_37_years	chr2	95816841	95816868	95816867	-	RAMPAGE_only	6	6	13	0.581047	3.251629	chr2	95816262	95817533	LINE|L1|L1PREC2	-	chr2	95807117	95940908	STRG.33314.5	-	95807117,95814049,95851165,95851693,95852125,95853708,95855265,95857308,95859860,95867439,95876438,95880426,95880594,95882301,95882468,95884172,95884339,95886047,95886215,95887924,95888091,95889798,95889965,95891664,95891831,95893532,95893695,95895398,95895561,95897269,95897436,95899144,95899307,95901014,95901177,95903052,95904760,95904923,95906630,95906793,95908668,95910372,95910539,95912243,95912406,95914107,95914274,95915979,95916142,95917854,95918013,95919732,95919891,95921606,95921781,95923494,95923660,95925351,95925518,95927213,95927380,95929071,95929238,95935453,95935615,95938986	95813957,95837108,95851195,95851787,95852196,95853861,95856180,95857492,95860074,95867581,95876509,95880499,95880623,95882374,95882497,95884245,95884368,95886120,95886244,95887997,95888120,95889871,95889994,95891737,95891860,95893605,95893724,95895471,95895590,95897342,95897465,95899217,95899336,95901087,95902958,95903081,95904833,95904952,95906703,95906822,95908697,95910445,95910568,95912316,95912435,95914180,95914303,95916052,95916171,95917927,95918042,95919805,95919920,95921679,95921810,95923567,95923689,95925424,95925547,95927286,95927409,95929144,95929267,95935526,95935644,95940908	0.923077
testis_male_adult_37_years	chr6	108443418	108443468	108443418	+	RAMPAGE_only	28	29	158	7.061951	6.059840	chr6	108443041	108443523	LTR|ERVL-MaLR|MLT1G1	-	chr6	108442125	108526261	STRG.118379.3	+	108442125,108447213,108476864,108477191,108510211,108519696,108522296	108443490,108447296,108476935,108477292,108510352,108519810,108526261	0.981013
testis_male_adult_37_years	chr1	778408	778433	778432	-	High_confidence	3	4	10	0.446959	3.121928	chr1	778254	778442	SINE|Alu|FRAM	-	chr1	725884	778626	AL669831.1|ENST00000506640.2	-	725884,733306,735422,743179,744194,744727,746694,756076,758966,764722,766328,768547,769496,772975,774170,778283	729804,733364,735613,743350,744391,744825,746818,756141,759123,765247,766387,768613,769712,773107,774280,778626	1.000000
testis_male_adult_37_years	chr18	13998342	13998361	13998342	+	RAMPAGE_only	7	8	14	0.625742	3.238901	chr18	13998232	13998498	LTR|ERVL-MaLR|THE1A	+	chr18	14028933	14029675	STRG.259604.1	+	14028933	14029675	0.928571
testis_male_adult_37_years	chr12	114241946	114241974	114241958	-	High_confidence	3	3	15	0.670438	3.807355	chr12	114241815	114242066	LTR|ERVL-MaLR|MLT1K	+	chr12	114238969	114241770	LINC02459|ENST00000551761.1	-	114238969,114241727	114239400,114241770	0.533333
testis_male_adult_37_years	chr9	37431792	37431796	37431795	+	RAMPAGE_only	5	5	10	0.446959	3.169925	chr9	37431693	37431840	SINE|MIR|MIRb	-	chr9	37428537	37436987	GRHPR|ENST00000480596.5	+	37428537,37430510,37432007,37436660	37429836,37430646,37432138,37436987	0.700000
testis_male_adult_37_years	chr12	40620714	40620747	40620725	+	High_confidence	6	6	15	0.670438	3.373557	chr12	40620498	40621778	LTR|ERV1|LTR12E	+	chr12	40620714	40622089	STRG.201263.1	+	40620714,40621854	40621039,40622089	0.800000
testis_male_adult_37_years	chr9	111783492	111783493	111783492	-	High_confidence	55	60	71	3.173408	5.040986	chr9	111782434	111783697	LINE|L2|L2a	+	chr9	111686572	111783493	C9orf84|ENST00000318737.8	-	111686572,111691550,111693798,111694230,111699953,111702104,111703880,111705246,111706567,111707854,111713099,111714444,111718183,111722408,111723791,111727632,111738279,111741475,111746233,111748091,111756324,111758083,111758694,111775790,111780929,111783387	111686870,111692511,111693948,111694362,111700047,111702226,111703992,111705364,111706746,111707924,111713172,111714623,111718288,111722585,111723911,111728049,111738522,111741570,111746342,111748199,111756478,111758195,111758848,111775975,111781017,111783493	0.943662
testis_male_adult_37_years	chr9	74275383	74275390	74275388	-	High_confidence	24	40	75	3.352192	5.329633	chr9	74275080	74276495	LTR|ERV1|LTR12C	-	chr9	74271893	74275376	STRG.162220.2	-	74271893,74275112	74274821,74275376	0.506667
testis_male_adult_37_years	chrX	107245044	107245087	107245044	-	RAMPAGE_only	237	301	1186	53.009327	6.117483	chrX	107244866	107245402	DNA|MULE-MuDR|Ricksha_c	-	chrX	107123426	107206440	NUP62CL|NM_017681.2	-	107123426,107147742,107153171,107153453,107154095,107167648,107175088,107193028,107206272	107124332,107147809,107153306,107153503,107154246,107167784,107175193,107193072,107206440	0.935919
testis_male_adult_37_years	chr8	61301048	61301069	61301063	-	High_confidence	45	46	102	4.558981	5.561775	chr8	61300698	61301320	LINE|L2|L2c	+	chr8	61300518	61301018	STRG.147433.3	-	61300518,61300693	61300593,61301018	0.784314
testis_male_adult_37_years	chr4	4348147	4348173	4348147	+	High_confidence	12	12	49	2.190099	5.194236	chr4	4348118	4348397	SINE|Alu|AluSg	-	chr4	4348139	4419058	NSG1|ENST00000421177.6	+	4348139,4380982,4385059,4385472,4385856,4387603,4391474,4409572,4417234	4348471,4381073,4385201,4385555,4387173,4387758,4391591,4409683,4419058	0.775510
testis_male_adult_37_years	chr19	51354770	51354799	51354778	-	High_confidence	11	17	70	3.128712	4.551860	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
testis_male_adult_37_years	chr2	16523178	16523190	16523189	+	High_confidence	13	13	27	1.206789	4.180451	chr2	16523225	16523388	SINE|MIR|MIRc	+	chr2	16523189	16527809	AC104623.1|ENST00000443066.2	+	16523189,16527664	16523489,16527809	0.740741
testis_male_adult_37_years	chr7	150043615	150043642	150043615	+	RAMPAGE_only	5	5	10	0.446959	2.921928	chr7	150043566	150043646	LINE|L2|L2	+	chr7	150041362	150045092	AC092666.1|ENST00000493400.1	+	150041362,150044749	150041461,150045092	0.700000
testis_male_adult_37_years	chr1	170025904	170025914	170025905	-	RAMPAGE_only	3	5	10	0.446959	3.321928	chr1	170025870	170026314	LTR|ERVL-MaLR|MLT1C	+	chr1	169921328	170068915	KIFAP3|NM_001204517.1	-	169921328,169954010,169961045,169972512,169978084,169981971,169982701,169983269,169984581,169992154,170016461,170024417,170031885,170034371,170035453,170038289,170039232,170046711,170055304,170067503	169921781,169954110,169961235,169972598,169978183,169982097,169982867,169983382,169984690,169992255,170016624,170024596,170031984,170034496,170035553,170038431,170039288,170046866,170055436,170068915	1.000000
testis_male_adult_37_years	chr6	110200691	110200707	110200706	+	RAMPAGE_only	4	6	13	0.581047	3.418296	chr6	110200686	110200864	SINE|MIR|MIRc	+	chr6	110180420	110232220	CDC40|NM_015891.2	+	110180420,110193181,110201557,110207505,110209083,110210706,110212132,110213085,110215285,110217701,110219363,110219735,110226166,110228831,110229953	110180633,110193268,110201687,110207589,110209223,110210803,110212272,110213160,110215331,110217803,110219479,110219869,110226243,110228976,110232220	0.923077
testis_male_adult_37_years	chr3	126748971	126748998	126748971	+	RAMPAGE_only	10	10	27	1.206789	4.213661	chr3	126748776	126749205	LINE|L2|L2b	-	chr3	126730563	126960391	CHCHD6|ENST00000513253.1	+	126730563,126733077,126852646,126914679,126957424,126960195	126730630,126733222,126852730,126914750,126957551,126960391	0.629630
testis_male_adult_37_years	chr3	99598066	99598102	99598101	+	High_confidence	6	6	19	0.849222	4.058814	chr3	99598015	99598413	LTR|ERVL|LTR16	-	chr3	99598063	99623820	AC107029.2|ENST00000462011.1	+	99598063,99621951	99598499,99623820	0.842105
testis_male_adult_37_years	chr15	96984588	96984610	96984588	+	High_confidence	5	6	12	0.536351	3.095795	chr15	96984065	96984724	LTR|ERV1|LTR12C	-	chr15	96984138	97236550	STRG.240748.4	+	96984138,97091022,97236220	96984724,97091116,97236550	0.500000
testis_male_adult_37_years	chr13	99514211	99514212	99514211	+	High_confidence	40	45	55	2.458274	5.079965	chr13	99514054	99514616	DNA|TcMar-Tigger|Tigger3c	+	chr13	99514214	99537862	TM9SF2|ENST00000463709.1	+	99514214,99517613,99519547,99520035,99529466,99536607,99537738	99514316,99517681,99519628,99520129,99529594,99536737,99537862	0.890909
testis_male_adult_37_years	chr7	103184768	103184802	103184771	+	RAMPAGE_only	3	3	24	1.072701	3.936180	chr7	103184757	103184850	LINE|L1|L1M1	+	chr7	103148993	103214889	STRG.135014.2	+	103148993,103194976,103214564	103149932,103195068,103214889	0.625000
testis_male_adult_37_years	chr1	231476562	231476577	231476574	+	RAMPAGE_only	12	13	27	1.206789	4.469670	chr1	231476439	231476636	DNA|hAT-Blackjack|MER63A	-	chr1	231528652	231702561	TSNAX-DISC1|NR_028399.1	+	231528652,231529254,231537212,231542480,231561127,231616643,231617952,231693825,231701954	231528826,231529359,231537327,231542611,231561255,231616906,231618059,231694805,231702561	0.629630
testis_male_adult_37_years	chr4	137193787	137193788	137193787	+	High_confidence	4	4	7	0.312871	2.521641	chr4	137193712	137193847	LTR|ERVL|LTR67B	+	chr4	137193755	137198367	LINC02510|ENST00000509798.1	+	137193755,137197205	137194169,137198367	1.000000
testis_male_adult_37_years	chr12	31728485	31728486	31728485	-	High_confidence	8	8	11	0.491655	3.121928	chr12	31728300	31728554	SINE|MIR|MIR	-	chr12	31671944	31729010	AMN1|ENST00000537562.5	-	31671944,31689006,31697360,31697739,31701862,31709292,31714440,31714881,31719217,31728970	31672377,31689118,31697417,31697957,31702007,31709425,31714631,31714951,31719356,31729010	0.818182
testis_male_adult_37_years	chr5	27217713	27217721	27217713	+	High_confidence	33	33	94	4.201414	5.819305	chr5	27217510	27218349	LTR|ERV1|LTR1A2	+	chr5	27217725	27219081	STRG.91407.1	+	27217725	27219081	0.882979
testis_male_adult_37_years	chr11	46090462	46090498	46090497	-	RAMPAGE_only	4	4	9	0.402263	3.169925	chr11	46090495	46090712	DNA|hAT-Charlie|MER103C	-	chr11	45971347	46092205	PHF21A|ENST00000531959.5	-	45971347,45979759,46076753,46079133,46084165,46092182	45971367,45979966,46076840,46079166,46084302,46092205	1.000000
testis_male_adult_37_years	chr2	171414659	171414677	171414676	-	RAMPAGE_only	5	5	10	0.446959	2.921928	chr2	171414444	171414743	SINE|Alu|AluJb	+	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.700000
testis_male_adult_37_years	chr10	19768160	19768196	19768169	+	RAMPAGE_only	25	27	98	4.380197	5.845176	chr10	19768143	19768495	LTR|ERV1|LTR23	+	chr10	19816238	20289856	PLXDC2|ENST00000377252.4	+	19816238,20001774,20046868,20068169,20143294,20147783,20164467,20176998,20177327,20211668,20217425,20219063,20245344,20279702	19817191,20001986,20047015,20068239,20143417,20147902,20164567,20177094,20177409,20211729,20217576,20219102,20245505,20289856	0.714286
testis_male_adult_37_years	chr5	173214303	173214304	173214303	+	High_confidence	21	21	21	0.938614	4.070656	chr5	173213272	173214621	LTR|ERV1|LTR12C	+	chr5	173214197	173215141	STRG.105572.1	+	173214197	173215141	0.952381
testis_male_adult_37_years	chr2	224656634	224656635	224656634	+	High_confidence	15	15	22	0.983310	3.975418	chr2	224656210	224657075	LTR|ERV1|LTR12C	+	chr2	224656648	224657179	STRG.45620.1	+	224656648	224657179	0.772727
testis_male_adult_37_years	chr3	98732862	98732880	98732879	+	High_confidence	3	3	7	0.312871	2.807355	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98732713	98794393	ST3GAL6|ENST00000497621.5	+	98732713,98756368,98768429,98770878,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733011,98756540,98768529,98770956,98772916,98773983,98785040,98788222,98788463,98791993,98794393	0.571429
testis_male_adult_37_years	chr11	12094123	12094134	12094133	+	High_confidence	4	5	11	0.491655	3.321928	chr11	12093951	12094241	LINE|L2|L2c	-	chr11	12094016	12162420	MICAL2|ENST00000526065.1	+	12094016,12109700,12162078	12094147,12109773,12162420	0.818182
testis_male_adult_37_years	chr5	131316079	131316089	131316079	+	RAMPAGE_only	2	3	9	0.402263	2.750000	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131327198	131393106	STRG.101106.3	+	131327198,131344001,131359208,131385542,131390992,131391828	131341672,131344138,131359547,131385644,131391108,131393106	0.888889
testis_male_adult_37_years	chr13	42999599	42999658	42999654	+	RAMPAGE_only	12	12	57	2.547666	5.100005	chr13	42999404	43000000	LTR|ERVL|MER70B	+	chr13	43023202	43114224	DNAJC15|ENST00000379221.3	+	43023202,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43114224	0.929825
testis_male_adult_37_years	chr17	52603738	52603739	52603738	-	RAMPAGE_only	5	6	7	0.312871	2.584963	chr17	52603566	52603924	LTR|ERVL-MaLR|THE1D	-	chr17	52601186	52610563	STRG.254953.1	-	52601186	52610563	0.571429
testis_male_adult_37_years	chr20	33537140	33537184	33537154	+	RAMPAGE_only	2	2	12	0.536351	3.095795	chr20	33535685	33537533	Retroposon|SVA|SVA_D	-	chr20	33535104	33613958	STRG.275954.6	+	33535104,33571685,33606955,33611093	33545118,33574261,33607099,33613958	0.916667
testis_male_adult_37_years	chr1	51577144	51577179	51577168	+	High_confidence	8	9	33	1.474964	4.607264	chr1	51576908	51577311	LTR|ERVL-MaLR|MSTB	+	chr1	51577252	51579462	STRG.5373.1	+	51577252	51579462	0.606061
testis_male_adult_37_years	chr7	77306738	77306739	77306738	+	RAMPAGE_only	7	10	10	0.446959	2.646439	chr7	77305135	77307428	LINE|L1|L1MA5A	-	chr7	77304676	77308086	STRG.134105.1	+	77304676	77308086	0.500000
testis_male_adult_37_years	chr2	105042248	105042291	105042283	+	RAMPAGE_only	2	2	9	0.402263	2.947703	chr2	105042044	105042438	LTR|ERVL-MaLR|MLT1F2	-	chr2	105038024	105099960	MRPS9|NM_182640.2	+	105038024,105049170,105071312,105071458,105079982,105088983,105089919,105092400,105093529,105097154,105099669	105038227,105049350,105071375,105071489,105080062,105089069,105089995,105092569,105093638,105097324,105099960	1.000000
testis_male_adult_37_years	chr12	127983379	127983403	127983393	-	High_confidence	14	14	43	1.921923	4.546439	chr12	127983198	127984510	LTR|ERV1|LTR12C	+	chr12	127883988	127983891	LINC00508|NR_126452.2	-	127883988,127940573,127983066,127983801	127885105,127940735,127983125,127983891	0.627907
testis_male_adult_37_years	chr2	230961069	230961095	230961069	-	High_confidence	2	3	11	0.491655	3.277613	chr2	230960613	230961268	LINE|L1|L1MCb	+	chr2	230909865	230961066	GPR55|ENST00000392039.2	-	230909865,230960774	230911096,230961066	0.636364
testis_male_adult_37_years	chr5	36220942	36220949	36220948	-	RAMPAGE_only	5	5	10	0.446959	2.641604	chr5	36220731	36221135	LTR|ERVL-MaLR|MLT1F	-	chr5	36213680	36241798	STRG.92408.7	-	36213680,36226474,36227476,36241498	36225623,36226563,36227565,36241798	0.800000
testis_male_adult_37_years	chr11	65079943	65079959	65079958	-	RAMPAGE_only	3	4	8	0.357567	2.807355	chr11	65079891	65080189	SINE|Alu|AluYf1	-	chr11	65079165	65083977	CDCA5|ENST00000527430.1	-	65079165,65079352,65083363,65083484,65083628,65083932	65079187,65079787,65083399,65083550,65083716,65083977	0.750000
testis_male_adult_37_years	chr1	16604243	16604244	16604243	-	High_confidence	15	15	15	0.670438	3.506891	chr1	16604205	16604278	LINE|CR1|L3	+	chr1	16564852	16604934	NBPF1|ENST00000392963.5	-	16564852,16565632,16566407,16567178,16567978,16569072,16573141,16574486,16575156,16576266,16577316,16579192,16580744,16581419,16582543,16591846,16592158,16604240,16604790	16564918,16565805,16566459,16567351,16568030,16569236,16573193,16574692,16575229,16576481,16577419,16579402,16580956,16581492,16582758,16592056,16592313,16604364,16604934	0.866667
testis_male_adult_37_years	chr12	16058206	16058207	16058206	+	High_confidence	413	421	472	21.096461	5.617348	chr12	16057198	16058622	LTR|ERV1|LTR12C	+	chr12	16057424	16237494	STRG.199273.1	+	16057424,16107509,16199504,16233080,16236488	16058625,16107570,16199645,16233134,16237494	0.976695
testis_male_adult_37_years	chr19	36846880	36846885	36846884	-	RAMPAGE_only	3	3	7	0.312871	2.807355	chr19	36846721	36846945	LTR|ERVL|MER74B	+	chr19	36818321	36850267	ZNF790|NM_001242801.1	-	36818321,36823284,36823666,36825610,36850001	36820114,36823380,36823790,36825692,36850267	0.714286
testis_male_adult_37_years	chr7	142171932	142171950	142171932	+	High_confidence	6	6	15	0.670438	3.640224	chr7	142171707	142172029	LINE|L2|L2c	-	chr7	142171169	142221288	MGAM2|ENST00000496337.1	+	142171169,142172097,142172651,142173228,142175651,142183265,142185076,142185988,142187749,142189366,142196153,142196564,142196699,142197399,142197643,142198138,142198614,142199879,142208219,142208572,142218360,142219869	142171440,142172194,142172764,142173354,142175780,142183373,142185139,142186123,142187834,142189505,142196287,142196599,142196816,142197548,142197728,142198195,142198739,142199968,142208306,142208622,142218531,142221288	0.933333
testis_male_adult_37_years	chr4	183482238	183482239	183482238	-	High_confidence	328	330	344	15.375387	5.693091	chr4	183481823	183483228	LTR|ERV1|LTR12C	-	chr4	183480561	183483182	STRG.87180.1	-	183480561	183483182	0.944767
testis_male_adult_37_years	chr6	20319698	20319699	20319698	+	High_confidence	39	39	46	2.056011	4.498955	chr6	20318737	20320042	LTR|ERV1|LTR12C	+	chr6	20319717	20320500	STRG.109510.1	+	20319717	20320500	0.847826
testis_male_adult_37_years	chr5	16441110	16441111	16441110	-	High_confidence	6	6	7	0.312871	2.584963	chr5	16440583	16441326	LTR|ERVL|HERV16-int	-	chr5	16373360	16441102	LOC101929505|NR_104625.1	-	16373360,16384133,16430390,16430785,16431047,16437373,16439252,16439885,16441087	16373836,16384344,16430604,16430978,16431112,16437915,16439475,16440081,16441102	0.714286
testis_male_adult_37_years	chr2	3536827	3536873	3536866	-	High_confidence	7	8	48	2.145403	5.110902	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531989	3536869	STRG.23476.12	-	3531989,3536723	3534255,3536869	0.979167
testis_male_adult_37_years	chr19	45524130	45524140	45524139	+	RAMPAGE_only	4	5	10	0.446959	3.121928	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	1.000000
testis_male_adult_37_years	chr13	110822106	110822107	110822106	+	High_confidence	681	681	706	31.555299	5.349393	chr13	110820975	110822522	LTR|ERV1|LTR12C	+	chr13	110822117	110839110	STRG.221293.1	+	110822117,110824862,110838215	110822547,110826492,110839110	0.953258
testis_male_adult_37_years	chr9	128780076	128780110	128780083	+	RAMPAGE_only	5	5	49	2.190099	4.523201	chr9	128779484	128781166	Retroposon|SVA|SVA_D	+	chr9	128781146	128781724	STRG.168372.1	+	128781146	128781724	0.775510
testis_male_adult_37_years	chr10	45594345	45594371	45594349	-	High_confidence	2	2	10	0.446959	3.169925	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45454592	45594491	STRG.173690.3	-	45454592,45459119,45461230,45464238,45489366,45533109,45553111,45594234	45458543,45459267,45461411,45464327,45489417,45533289,45553204,45594491	0.800000
testis_male_adult_37_years	chr4	4923353	4923373	4923372	-	High_confidence	46	46	84	3.754455	5.259753	chr4	4923222	4923421	SINE|MIR|MIRc	+	chr4	4922151	4923349	STRG.69311.1	-	4922151	4923349	1.000000
testis_male_adult_37_years	chr3	52482401	52482437	52482418	+	RAMPAGE_only	3	5	23	1.028006	4.186704	chr3	52482420	52482563	SINE|MIR|MIR	+	chr3	52478220	52487653	STRG.53499.5	+	52478220,52478448,52479748,52480183,52480878,52485777,52487195	52478282,52478577,52479862,52480295,52484637,52485827,52487653	0.913043
testis_male_adult_37_years	chr8	144103557	144103594	144103557	-	High_confidence	2	2	9	0.402263	2.947703	chr8	144103289	144103558	SINE|MIR|MIR	-	chr8	144098636	144103756	STRG.156086.3	-	144098636,144098865,144099080,144099509,144099702,144099928,144103050,144103552	144098788,144098994,144099430,144099618,144099844,144100069,144103225,144103756	0.888889
testis_male_adult_37_years	chr18	3481719	3481724	3481723	-	RAMPAGE_only	6	7	18	0.804526	3.616875	chr18	3481400	3481686	SINE|Alu|AluJr	-	chr18	3461958	3462388	STRG.258938.1	-	3461958	3462388	0.666667
testis_male_adult_37_years	chr22	42596023	42596048	42596047	-	RAMPAGE_only	9	11	26	1.162093	3.970176	chr22	42596012	42596135	SINE|MIR|MIRb	+	chr22	42585886	42603012	POLDIP3|ENST00000491021.1	-	42585886,42587505,42591954,42595536,42596185,42597672,42599697,42601969,42602769	42585968,42587572,42592084,42595614,42596365,42597737,42599793,42602056,42603012	0.500000
testis_male_adult_37_years	chr13	93454877	93454896	93454880	+	RAMPAGE_only	6	10	31	1.385573	4.220168	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.709677
testis_male_adult_37_years	chr12	31184926	31184976	31184954	-	High_confidence	7	7	37	1.653748	4.764858	chr12	31184785	31185081	SINE|Alu|AluSq	+	chr12	31158896	31185361	STRG.200961.6	-	31158896,31170407,31171435,31172322,31172815,31173513,31177658,31178802,31183213,31184714	31159054,31170504,31171606,31172472,31172960,31173574,31177889,31178961,31183323,31185361	0.864865
testis_male_adult_37_years	chr9	133023924	133023946	133023945	-	High_confidence	3	3	6	0.268175	2.584963	chr9	133023772	133024103	LTR|ERVL-MaLR|MLT1A0	-	chr9	133023449	133023945	STRG.168076.1	-	133023449	133023945	0.833333
testis_male_adult_37_years	chr3	180870516	180870522	180870518	-	High_confidence	11	16	28	1.251485	4.315824	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180742494	180870744	STRG.67152.4	-	180742494,180781983,180810409,180847506,180870046	180751410,180782124,180810470,180847624,180870744	0.928571
testis_male_adult_37_years	chr3	31870113	31870130	31870129	-	RAMPAGE_only	6	6	11	0.491655	3.321928	chr3	31869938	31871523	LTR|ERV1|LTR12C	+	chr3	31747971	31906996	OSBPL10|ENST00000485205.5	-	31747971,31830039,31876432,31906847	31748120,31830231,31876512,31906996	0.636364
testis_male_adult_37_years	chr5	128082264	128082276	128082264	-	High_confidence	2	2	8	0.357567	3.000000	chr5	128082078	128082379	SINE|Alu|AluY	+	chr5	127940425	128082881	STRG.100760.1	-	127940425,127956803,127966162,128061143,128082734	127941220,127956921,127966928,128061244,128082881	0.500000
testis_male_adult_37_years	chr17	41871799	41871803	41871799	-	RAMPAGE_only	5	5	10	0.446959	2.947703	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.900000
testis_male_adult_37_years	chr13	79566640	79566679	79566640	+	High_confidence	5	5	14	0.625742	2.521641	chr13	79560395	79566666	LINE|L1|L1PA12	+	chr13	79566726	79571446	LINC01068|NR_125772.1	+	79566726,79570562,79571079	79566807,79570750,79571446	1.000000
testis_male_adult_37_years	chr20	44351917	44351918	44351917	-	RAMPAGE_only	9	10	13	0.581047	3.546594	chr20	44351807	44351944	SINE|MIR|MIR3	-	chr20	44347551	44355185	AL117382.1|ENST00000438702.1	-	44347551,44350619,44351867,44355018	44347818,44350856,44351950,44355185	0.692308
testis_male_adult_37_years	chr12	104951527	104951534	104951527	-	High_confidence	8	8	16	0.715134	3.640224	chr12	104951478	104951633	DNA|DNA|UCON78	-	chr12	104928161	104951528	SLC41A2|ENST00000411411.1	-	104928161,104951490	104928694,104951528	0.812500
testis_male_adult_37_years	chr11	46220020	46220041	46220040	-	High_confidence	4	4	10	0.446959	2.921928	chr11	46219854	46220155	SINE|Alu|AluYk4	+	chr11	46213823	46219854	AC024475.3|ENST00000634553.1	-	46213823,46215726,46219771	46214224,46215891,46219854	1.000000
testis_male_adult_37_years	chr17	68100228	68100229	68100228	+	High_confidence	65	65	68	3.039321	5.156758	chr17	68099099	68100615	LTR|ERV1|LTR12C	+	chr17	68100215	68135935	STRG.256654.4	+	68100215,68114421,68125389,68125584	68101959,68114525,68125480,68135935	0.955882
testis_male_adult_37_years	chr16	14976731	14976732	14976731	+	High_confidence	29	31	39	1.743140	4.777021	chr16	14976610	14976830	DNA|hAT-Charlie|MER20	+	chr16	14976762	15017387	PDXDC1|ENST00000567306.5	+	14976762,14997752,14998339,15001775,15004186,15006393,15009680,15016128,15017119,15017320	14976904,14997826,14998405,15001856,15004333,15006583,15009759,15016213,15017168,15017387	0.846154
testis_male_adult_37_years	chr8	55560385	55560386	55560385	-	High_confidence	18	18	23	1.028006	3.641250	chr8	55559475	55560386	LINE|L1|L1P3b	-	chr8	55560060	55560378	STRG.146801.1	-	55560060	55560378	0.652174
testis_male_adult_37_years	chr1	217736634	217736659	217736634	+	RAMPAGE_only	17	19	75	3.352192	5.381338	chr1	217736522	217736699	LINE|L2|L2a	-	chr1	217737843	217801768	SPATA17|ENST00000492747.2	+	217737843,217739472,217741974,217774333,217782173,217801717	217737967,217739589,217742098,217774537,217782322,217801768	0.960000
testis_male_adult_37_years	chr6	18242654	18242665	18242654	-	RAMPAGE_only	12	13	33	1.474964	3.507150	chr6	18242382	18243110	DNA|TcMar-Tigger|MER44C	+	chr6	18225878	18249740	DEK|ENST00000507591.1	-	18225878,18236451,18237380,18249650	18226242,18236600,18237516,18249740	0.969697
testis_male_adult_37_years	chr5	120882520	120882540	120882539	-	High_confidence	8	8	16	0.715134	3.640224	chr5	120882298	120882779	LTR|ERVL|MER70A	-	chr5	120881728	120882663	STRG.100108.1	-	120881728	120882663	0.625000
testis_male_adult_37_years	chr16	15798662	15798675	15798664	-	RAMPAGE_only	31	44	83	3.709759	5.610184	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.903614
testis_male_adult_37_years	chr10	11517465	11517485	11517465	-	RAMPAGE_only	13	14	40	1.787836	4.396229	chr10	11517446	11517546	LINE|L2|L2c	+	chr10	11460509	11532275	USP6NL|ENST00000277575.5	-	11460509,11481769,11484970,11485168,11485816,11489101,11490831,11493118,11501100,11509594,11518534,11525385,11527499,11532177	11463849,11481922,11485070,11485234,11485911,11489222,11490880,11493228,11501208,11509675,11518574,11525468,11527567,11532275	0.700000
testis_male_adult_37_years	chr7	135495468	135495479	135495473	-	RAMPAGE_only	3	3	8	0.357567	2.521641	chr7	135495234	135495527	SINE|Alu|AluSx	+	chr7	135422220	135509693	CNOT4|ENST00000491203.5	-	135422220,135438157,135509554	135422353,135438423,135509693	0.750000
testis_male_adult_37_years	chr17	33580041	33580077	33580041	+	High_confidence	15	16	101	4.514285	5.278200	chr17	33579495	33580095	LTR|ERV1|LTR12D	-	chr17	33580038	33585772	STRG.252744.1	+	33580038,33581155	33580273,33585772	0.920792
testis_male_adult_37_years	chr11	37908345	37908374	37908350	-	High_confidence	5	5	15	0.670438	3.640224	chr11	37908181	37908785	LTR|ERVL|LTR18B	-	chr11	37907046	37908346	STRG.186397.1	-	37907046	37908346	0.666667
testis_male_adult_37_years	chr4	111802721	111802731	111802730	-	RAMPAGE_only	5	5	12	0.536351	3.418296	chr4	111802558	111802920	LTR|ERVL-MaLR|THE1D	-	chr4	111706092	111706946	STRG.79896.1	-	111706092	111706946	0.583333
testis_male_adult_37_years	chr17	7313784	7313800	7313784	-	High_confidence	2	2	7	0.312871	2.521641	chr17	7313740	7313844	LINE|L2|L2c	+	chr17	7312658	7313757	GPS2|ENST00000573807.5	-	7312658,7313028,7313211	7312839,7313124,7313757	0.857143
testis_male_adult_37_years	chr12	129109673	129109674	129109673	+	High_confidence	60	60	72	3.218104	4.653399	chr12	129109479	129109833	LTR|ERVL-MaLR|THE1A	+	chr12	129109689	129113298	LOC283352|NR_104172.1	+	129109689,129110992,129111419,129113064	129109757,129111139,129111515,129113298	0.888889
testis_male_adult_37_years	chr2	46580198	46580237	46580218	-	High_confidence	14	14	98	4.380197	5.710594	chr2	46579857	46580733	LINE|L2|L2a	+	chr2	46568255	46580238	AC018682.1|ENST00000506009.2	-	46568255,46580034	46569570,46580238	0.724490
testis_male_adult_37_years	chr16	4640809	4640831	4640809	+	RAMPAGE_only	4	5	12	0.536351	3.022055	chr16	4640825	4640929	SINE|MIR|MIR	+	chr16	4650386	4680067	MGRN1|ENST00000590790.5	+	4650386,4651962,4652677,4657245,4664708,4665098,4668264,4671390,4673497,4677462,4680031	4650483,4652051,4652824,4657363,4664775,4665151,4668312,4671459,4673657,4677572,4680067	0.666667
testis_male_adult_37_years	chr22	37755641	37755658	37755657	+	High_confidence	5	6	9	0.402263	2.947703	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37754881	37778071	STRG.285645.2	+	37754881,37755100,37755549,37757612,37759153,37765669,37768073,37769027,37769261,37771649,37772600,37776096	37754984,37755190,37755659,37758138,37759264,37765817,37768176,37769187,37769375,37771736,37775910,37778071	1.000000
testis_male_adult_37_years	chr9	23735567	23735568	23735567	-	High_confidence	33	33	45	2.011315	5.030633	chr9	23735281	23735578	SINE|Alu|AluSz6	-	chr9	23701414	23735565	ELAVL2|ENST00000423281.1	-	23701414,23704917,23731021,23735236	23701604,23705071,23731125,23735565	0.933333
testis_male_adult_37_years	chr4	14359380	14359407	14359402	+	High_confidence	32	51	115	5.140028	4.695811	chr4	14358481	14359822	LTR|ERV1|LTR12C	+	chr4	14359159	14360221	STRG.70902.1	+	14359159	14360221	0.939130
testis_male_adult_37_years	chr6	18522712	18522754	18522745	+	High_confidence	14	16	64	2.860537	4.760944	chr6	18522549	18522918	LTR|ERVL-MaLR|THE1B	+	chr6	18522746	18674001	MIR548A1HG|ENST00000637804.1	+	18522746,18535847,18536171,18590974,18665941,18673869	18522835,18536053,18536334,18591092,18666017,18674001	0.828125
testis_male_adult_37_years	chr2	126308482	126308525	126308482	+	High_confidence	2	2	10	0.446959	3.321928	chr2	126307723	126308563	LTR|ERV1|LTR1A2	-	chr2	126308509	126343992	AC023347.1|ENST00000435352.1	+	126308509,126312300,126343761	126308645,126312537,126343992	0.500000
testis_male_adult_37_years	chr10	130213507	130213544	130213507	+	High_confidence	19	19	93	4.156718	6.246282	chr10	130213296	130213675	LTR|ERV1|MER48	-	chr10	130213526	130483193	AL157712.1|ENST00000648275.1	+	130213526,130482880	130214029,130483193	0.548387
testis_male_adult_37_years	chr6	149408914	149408915	149408914	+	RAMPAGE_only	5	5	8	0.357567	2.521641	chr6	149408839	149408989	SINE|MIR|MIR3	-	chr6	149342812	149411516	TAB2|ENST00000470466.5	+	149342812,149369908,149378017,149379933,149397603,149397968,149399103,149409576	149342833,149370099,149379518,149380143,149397764,149398062,149399184,149411516	0.750000
testis_male_adult_37_years	chr3	80770347	80770433	80770412	-	High_confidence	160	173	792	35.399146	6.903148	chr3	80769735	80770387	LTR|ERV1|LTR1A1	-	chr3	80629298	80770952	STRG.56402.2	-	80629298,80633814,80761457,80769758	80631287,80633971,80761573,80770952	0.963384
testis_male_adult_37_years	chr2	131966717	131966749	131966717	-	High_confidence	3	3	9	0.402263	3.169925	chr2	131966263	131967512	LTR|ERV1|LTR12D	+	chr2	131965341	131966848	STRG.36718.1	-	131965341	131966848	1.000000
testis_male_adult_37_years	chr19	33553103	33553142	33553103	+	High_confidence	8	8	32	1.430269	4.476410	chr19	33553112	33553300	LTR|ERVL-MaLR|MLT1K	+	chr19	33553100	33556153	STRG.268629.1	+	33553100,33555067	33553550,33556153	0.875000
testis_male_adult_37_years	chr9	133023898	133023907	133023898	-	High_confidence	7	8	12	0.536351	3.277613	chr9	133023772	133024103	LTR|ERVL-MaLR|MLT1A0	-	chr9	133023449	133023945	STRG.168076.1	-	133023449	133023945	0.833333
testis_male_adult_37_years	chr5	2917818	2917856	2917840	+	High_confidence	45	47	170	7.598302	5.937759	chr5	2917481	2918186	LTR|ERV1|MER50	-	chr5	2917853	2920528	LOC105374620|NR_136207.1	+	2917853,2918673,2919016,2920424	2917904,2918825,2919168,2920528	0.641176
testis_male_adult_37_years	chr6	31893404	31893416	31893415	-	RAMPAGE_only	3	4	9	0.402263	3.000000	chr6	31893329	31893615	SINE|Alu|AluJr	-	chr6	31879758	31896504	EHMT2|ENST00000480912.5	-	31879758,31880672,31881013,31882698,31882893,31883361,31883805,31884391,31884644,31884890,31886580,31886774,31886994,31887576,31887778,31888040,31888362,31888598,31888968,31889227,31889467,31892406,31892693,31892825,31893361,31896262	31880264,31880848,31881092,31882785,31883009,31883439,31883950,31884559,31884799,31885016,31886682,31886897,31887101,31887659,31887961,31888276,31888506,31888747,31889070,31889342,31889602,31892562,31892734,31892910,31893662,31896504	0.666667
testis_male_adult_37_years	chr14	75801038	75801098	75801063	+	RAMPAGE_only	4	4	25	1.117397	4.133661	chr14	75797848	75801364	LINE|L1|L1PB1	-	chr14	75803143	75820768	TTLL5|ENST00000608522.2	+	75803143,75820006,75820602	75803253,75820161,75820768	0.640000
testis_male_adult_37_years	chr13	108886727	108886731	108886727	+	High_confidence	3	3	7	0.312871	2.584963	chr13	108886377	108886830	LTR|ERV1|MER61D	-	chr13	108886614	109126436	STRG.221016.3	+	108886614,108888371,108898015,108910002,108957687,108961538,108962423,108964760,108992375,109008896,109019710,109046915,109052299,109055045,109055389,109100784,109120369,109125111	108886747,108888477,108898133,108910150,108957799,108961656,108962495,108964902,108992448,109009049,109019911,109046991,109052475,109055126,109055595,109100887,109120466,109126436	0.857143
testis_male_adult_37_years	chr2	65728241	65728262	65728241	+	High_confidence	4	4	14	0.625742	2.931209	chr2	65728280	65728592	SINE|Alu|AluSz	+	chr2	65728256	65730776	STRG.30499.2	+	65728256,65730498	65728381,65730776	0.857143
testis_male_adult_37_years	chr11	130336844	130336892	130336875	-	High_confidence	9	11	33	1.474964	3.845663	chr11	130336530	130337925	LTR|ERV1|LTR12C	-	chr11	130336311	130336884	STRG.196301.1	-	130336311	130336884	0.848485
testis_male_adult_37_years	chr2	183137322	183137359	183137344	+	RAMPAGE_only	3	3	15	0.670438	3.664498	chr2	183137312	183137592	SINE|Alu|AluJb	+	chr2	183124418	183161680	NUP35|ENST00000479162.5	+	183124418,183128286,183130417,183133565,183157443,183158282,183159487	183124497,183128457,183130545,183133623,183157513,183158411,183161680	0.533333
testis_male_adult_37_years	chr2	17729942	17729972	17729971	-	RAMPAGE_only	4	4	10	0.446959	2.725481	chr2	17729819	17729937	DNA|hAT-Charlie|MER3	-	chr2	17716749	17746412	SMC6|ENST00000381272.5	-	17716749,17717087,17718076,17720939,17721141,17725256,17726388,17731077,17731740,17738220,17741611,17745826	17716905,17717176,17718223,17721038,17721261,17725358,17726469,17731139,17731877,17738326,17741729,17746412	0.600000
testis_male_adult_37_years	chr7	80391453	80391476	80391474	-	High_confidence	9	15	22	0.983310	3.721928	chr7	80391409	80391776	LTR|ERVL-MaLR|THE1B	-	chr7	80370924	80391453	AC004862.1|ENST00000437763.7	-	80370924,80372126,80373811,80374340,80380294,80383902,80384848,80391428	80371577,80372294,80373990,80374460,80380474,80384124,80384979,80391453	0.818182
testis_male_adult_37_years	chr12	30623763	30623778	30623763	-	RAMPAGE_only	5	5	13	0.581047	2.751629	chr12	30623611	30624139	LTR|ERVL-MaLR|MLT1D	-	chr12	30618750	30621385	STRG.200783.1	-	30618750	30621385	0.538462
testis_male_adult_37_years	chr17	2975599	2975661	2975660	+	High_confidence	12	14	80	3.575671	5.448499	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975283	3008090	STRG.249620.3	+	2975283,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010	2975775,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008090	0.925000
testis_male_adult_37_years	chr5	116085455	116085466	116085461	+	High_confidence	4	6	14	0.625742	3.026987	chr5	116085484	116085794	DNA|hAT-Charlie|MER113	+	chr5	116085461	116293290	COMMD10|NM_001308080.1	+	116085461,116087496,116091078,116092544,116134067,116291516,116292450	116085606,116087587,116091189,116092700,116134178,116291576,116293290	0.642857
testis_male_adult_37_years	chr6	134714882	134714903	134714882	-	RAMPAGE_only	11	11	23	1.028006	4.055958	chr6	134714595	134715363	LTR|ERV1|MER50	-	chr6	134711721	134713049	STRG.121637.1	-	134711721	134713049	0.521739
testis_male_adult_37_years	chr2	193502728	193502778	193502777	+	High_confidence	20	20	83	3.709759	5.320234	chr2	193501468	193502973	LTR|ERV1|LTR12C	-	chr2	193502636	193504347	STRG.42506.1	+	193502636	193504347	0.795181
testis_male_adult_37_years	chr16	83214078	83214082	83214078	+	High_confidence	9	12	18	0.804526	4.058814	chr16	83213743	83214155	LTR|ERV1|LTR12	+	chr16	83214066	83602579	STRG.248667.1	+	83214066,83217344,83344861,83486476,83602453	83214199,83217497,83345006,83486655,83602579	0.833333
testis_male_adult_37_years	chrX	109760765	109760777	109760768	-	RAMPAGE_only	5	5	13	0.581047	3.238901	chrX	109760494	109761733	LINE|L1|L1MCa	+	chrX	109641329	109733403	ACSL4|NM_001318509.1	-	109641329,109659353,109661530,109663210,109665419,109668100,109669033,109674401,109677987,109678264,109680997,109681265,109682718,109683135,109696143,109733138	109644186,109659511,109661645,109663402,109665494,109668273,109669173,109674473,109678111,109678415,109681136,109681375,109682896,109683666,109696196,109733403	0.923077
testis_male_adult_54_years	chr8	82442412	82442416	82442413	+	High_confidence	45	64	119	4.418709	6.165457	chr8	82441240	82442829	LTR|ERV1|LTR12C	+	chr8	82442332	82493709	STRG.187865.1	+	82442332,82488144	82442914,82493709	0.907563
testis_male_adult_54_years	chr5	20819577	20819611	20819607	-	High_confidence	38	43	85	3.156221	5.387110	chr5	20819309	20819762	LTR|ERVL|MER70A	-	chr5	20803481	20819608	STRG.114348.1	-	20803481,20819331	20803876,20819608	0.764706
testis_male_adult_54_years	chr3	7451760	7451774	7451760	+	High_confidence	8	9	15	0.556980	3.324863	chr3	7451549	7451776	SINE|MIR|MIRb	+	chr3	7451780	7636441	GRM7|ENST00000458641.2	+	7451780,7452606,7461582,7559160,7561417,7578421,7608001,7636252	7451819,7452807,7461722,7559343,7561573,7579357,7608094,7636441	0.533333
testis_male_adult_54_years	chrX	134839236	134839270	134839259	+	High_confidence	3	3	10	0.371320	2.947703	chrX	134838660	134840373	Retroposon|SVA|SVA_D	+	chrX	134839172	134854183	FAM122C|ENST00000460216.5	+	134839172,134845204,134845346,134847382,134849166,134852799,134854090	134839477,134845248,134845401,134847475,134849228,134852896,134854183	0.500000
testis_male_adult_54_years	chr2	162042243	162042254	162042243	-	RAMPAGE_only	2	2	8	0.297056	2.750000	chr2	162042112	162042315	SINE|MIR|MIRb	+	chr2	162038341	162047498	DPP4|ENST00000416189.5	-	162038341,162038948,162045531,162046701,162046914,162047402	162038422,162039021,162045612,162046805,162047006,162047498	0.875000
testis_male_adult_54_years	chr3	177272067	177272100	177272093	+	High_confidence	5	6	21	0.779772	3.932138	chr3	177270695	177272291	LTR|ERV1|LTR12C	-	chr3	177271681	177329909	STRG.84266.1	+	177271681,177329798	177272329,177329909	0.523810
testis_male_adult_54_years	chr6	10491686	10491717	10491686	+	High_confidence	5	5	16	0.594112	3.773557	chr6	10491486	10492779	LTR|ERV1|LTR12D	+	chr6	10492225	10509331	STRG.135644.4	+	10492225,10492819,10509086	10492394,10492931,10509331	0.625000
testis_male_adult_54_years	chr1	51297955	51297998	51297975	-	High_confidence	24	41	126	4.678633	6.050549	chr1	51297625	51298239	LINE|L2|L2a	+	chr1	51287257	51297961	TTC39A|NM_001297666.1	-	51287257,51288838,51290004,51290513,51294390,51296078,51297790	51288280,51288955,51290119,51290625,51294511,51296170,51297961	0.904762
testis_male_adult_54_years	chr19	8379598	8379599	8379598	+	High_confidence	62	63	64	2.376449	5.425615	chr19	8379160	8379914	LTR|ERV1|LTR12D	+	chr19	8379608	8380046	STRG.331484.1	+	8379608	8380046	0.765625
testis_male_adult_54_years	chr19	53086996	53087023	53086996	-	High_confidence	53	59	155	5.755462	6.500467	chr19	53086959	53087288	LINE|L2|L2a	-	chr19	53066613	53087037	ZNF160|NM_001322136.1	-	53066613,53074139,53075056,53086261,53086930	53070262,53074268,53075183,53086321,53087037	0.883871
testis_male_adult_54_years	chr19	46350849	46350870	46350849	+	RAMPAGE_only	9	10	20	0.742640	4.121928	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.900000
testis_male_adult_54_years	chr12	98465420	98465447	98465446	-	RAMPAGE_only	5	7	17	0.631244	3.577820	chr12	98465244	98465638	LTR|ERVL-MaLR|MLT1B	-	chr12	98338267	98424545	STRG.259829.1	-	98338267,98424090	98338446,98424545	0.647059
testis_male_adult_54_years	chr9	112469813	112469814	112469813	-	RAMPAGE_only	4	4	7	0.259924	2.584963	chr9	112469809	112469890	LINE|L2|L2a	-	chr9	112464038	112486505	STRG.209322.5	-	112464038,112484929	112484624,112486505	0.571429
testis_male_adult_54_years	chr7	39013135	39013167	39013135	+	High_confidence	2	2	8	0.297056	2.807355	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.750000
testis_male_adult_54_years	chr19	47751101	47751103	47751102	+	RAMPAGE_only	4	6	9	0.334188	2.947703	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47745564	47756744	NOP53|ENST00000598681.5	+	47745564,47746966,47750177,47750907,47751519,47752511,47754526,47754708,47755347,47756527,47756687	47745783,47747031,47750286,47751107,47751590,47752607,47754631,47754891,47755523,47756604,47756744	1.000000
testis_male_adult_54_years	chr20	47983193	47983201	47983193	+	High_confidence	34	34	82	3.044825	5.978056	chr20	47983227	47983403	DNA|hAT-Charlie|MER5A	+	chr20	47983225	47984313	LINC01523|NR_109942.1	+	47983225,47983981	47983521,47984313	0.719512
testis_male_adult_54_years	chr5	68019952	68019953	68019952	-	High_confidence	15	15	19	0.705508	3.826875	chr5	68019542	68020967	LTR|ERV1|LTR12C	-	chr5	68019604	68019972	STRG.118975.1	-	68019604	68019972	0.842105
testis_male_adult_54_years	chr3	95096765	95096766	95096765	+	RAMPAGE_only	7	7	8	0.297056	2.807355	chr3	95096501	95097162	LINE|L1|L1MA7	-	chr3	94938276	95152509	LINC00879|ENST00000470465.1	+	94938276,95088157,95138225,95152029	94938326,95088294,95138315,95152509	0.750000
testis_male_adult_54_years	chr7	12588912	12588951	12588912	+	High_confidence	8	8	21	0.779772	4.011365	chr7	12588873	12589215	LTR|ERV1|HERVFH21-int	-	chr7	12588927	12625052	SCIN|ENST00000523729.5	+	12588927,12596269,12604513,12622800,12625009	12589069,12596426,12604663,12622893,12625052	0.761905
testis_male_adult_54_years	chr4	10429113	10429134	10429113	-	High_confidence	6	6	19	0.705508	4.058814	chr4	10429021	10429153	LTR|ERVL|LTR33	-	chr4	10422693	10429231	STRG.89123.2	-	10422693	10429231	0.789474
testis_male_adult_54_years	chr17	5129120	5129128	5129120	+	High_confidence	13	13	23	0.854036	3.975418	chr17	5129149	5129211	SINE|MIR|MIR3	+	chr17	5128814	5135003	USP6|ENST00000357482.5	+	5128814,5129935,5130366,5130601,5132212,5132909,5133442,5133886	5128922,5130089,5130439,5130684,5132435,5132990,5133550,5135003	0.695652
testis_male_adult_54_years	chr10	63664646	63664692	63664649	+	High_confidence	14	14	82	3.044825	5.916829	chr10	63664644	63665398	LTR|ERV1|LTR17	-	chr10	63664655	63685728	STRG.219480.1	+	63664655,63684921	63664772,63685728	0.865854
testis_male_adult_54_years	chr19	34676037	34676038	34676037	-	High_confidence	127	127	168	6.238178	6.321652	chr19	34675656	34676296	LTR|ERV1|LTR12_	-	chr19	34576732	34677031	SCGB1B2P|NR_027620.3	-	34576732,34577265,34577542,34675629	34576994,34577456,34577732,34677031	0.803571
testis_male_adult_54_years	chr18	50797464	50797583	50797550	-	RAMPAGE_only	9	10	109	4.047389	5.610453	chr18	50797026	50797512	LTR|ERVL-MaLR|MLT1G1	-	chr18	50795119	50820064	MRO|NM_031939.3	-	50795119,50800035,50801348,50805153,50806703,50809301,50819580,50819896	50799390,50800143,50801504,50805336,50806850,50809404,50819702,50820064	1.000000
testis_male_adult_54_years	chr4	14359368	14359407	14359402	+	High_confidence	37	58	123	4.567237	4.831924	chr4	14358481	14359822	LTR|ERV1|LTR12C	+	chr4	14359382	14360308	STRG.89884.1	+	14359382	14360308	0.910569
testis_male_adult_54_years	chr13	30870216	30870234	30870216	+	High_confidence	3	3	9	0.334188	2.725481	chr13	30870055	30870253	SINE|MIR|MIRc	+	chr13	30870753	30871879	STRG.265575.1	+	30870753	30871879	0.555556
testis_male_adult_54_years	chrX	51511112	51511182	51511150	-	High_confidence	9	9	47	1.745205	5.186393	chrX	51510925	51511222	SINE|Alu|AluSq2	+	chrX	51502089	51511005	LINC01496|ENST00000448761.1	-	51502089,51505731,51505880,51510947	51502340,51505793,51505969,51511005	0.595745
testis_male_adult_54_years	chr6	125219583	125219594	125219583	+	High_confidence	4	5	8	0.297056	3.000000	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.875000
testis_male_adult_54_years	chr1	25820192	25820219	25820218	+	High_confidence	5	5	17	0.631244	3.734522	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820231	25829658	MTFR1L|ENST00000464008.6	+	25820231,25823018,25823237,25823643,25826301,25826614,25829508	25820659,25823128,25823323,25823748,25826411,25826826,25829658	1.000000
testis_male_adult_54_years	chr5	29143497	29143518	29143497	+	High_confidence	84	84	305	11.325263	5.942305	chr5	29143203	29143988	LTR|ERVL|MER21C	+	chr5	29143502	29172975	LOC101929660|NR_130777.1	+	29143502,29145747,29146270,29153458,29162415,29164416,29164929,29169559,29172042	29143729,29145874,29146461,29153620,29162590,29164514,29165046,29169586,29172975	0.911475
testis_male_adult_54_years	chr6	89656086	89656103	89656086	-	RAMPAGE_only	2	2	7	0.259924	2.807355	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642498	89819723	MDN1|ENST00000369393.7	-	89642498,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89706058,89707360,89708495,89710680,89712035,89712574,89713147,89714542,89715652,89716649,89718365,89718766,89719135,89722954,89723511,89725198,89727832,89728930,89730725,89732556,89738325,89740233,89743149,89743575,89745272,89745491,89747328,89749222,89749542,89750353,89751430,89753511,89754082,89756276,89758254,89758815,89761644,89762318,89771560,89772572,89774620,89776599,89780211,89781398,89785011,89787853,89789779,89790158,89793761,89794099,89794576,89803327,89819505	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89706192,89707476,89708628,89710794,89712256,89712786,89713296,89714751,89715769,89716809,89718627,89719030,89719225,89723143,89723619,89725396,89727955,89729139,89730923,89732775,89738455,89740378,89743280,89743714,89745411,89745626,89747470,89749369,89749751,89750532,89751582,89753622,89754230,89756390,89758351,89758960,89761748,89762530,89771621,89772721,89774733,89776695,89780293,89781592,89785126,89787957,89789911,89790401,89793954,89794207,89794801,89803554,89819723	1.000000
testis_male_adult_54_years	chr15	24245072	24245107	24245106	+	RAMPAGE_only	15	15	25	0.928300	4.563856	chr15	24244958	24245353	LTR|ERV1|LTR38-int	-	chr15	24261278	24276829	AC087463.4|ENST00000566676.1	+	24261278,24274790,24276466	24261332,24274952,24276829	0.560000
testis_male_adult_54_years	chr12	127060455	127060505	127060497	+	High_confidence	25	26	85	3.156221	5.743350	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060478	127120506	STRG.263228.1	+	127060478,127119553	127061334,127120506	0.952941
testis_male_adult_54_years	chr12	49111503	49111527	49111503	-	High_confidence	10	12	41	1.522412	4.711953	chr12	49111473	49111558	SINE|Alu|AluSz6	-	chr12	49097138	49110900	LMBR1L|NM_001300750.1	-	49097138,49097943,49100387,49100555,49101249,49101471,49102119,49102292,49102467,49102886,49103090,49103686,49104447,49104745,49105923,49106544,49106960,49110483	49097739,49098105,49100454,49100646,49101323,49101549,49102196,49102376,49102540,49102951,49103159,49103813,49104551,49104885,49105957,49106746,49107045,49110900	0.853659
testis_male_adult_54_years	chr18	30175965	30176013	30175965	-	RAMPAGE_only	42	46	138	5.124218	5.484909	chr18	30175809	30176113	LTR|ERV1|LTR1A2	-	chr18	30157459	30157800	STRG.325577.1	-	30157459	30157800	0.652174
testis_male_adult_54_years	chr18	12776136	12776137	12776136	-	High_confidence	85	85	90	3.341881	5.474968	chr18	12775721	12777416	LTR|ERV1|LTR12C	-	chr18	12739489	12776137	AP005482.1|ENST00000589930.2	-	12739489,12749293,12765276,12775668	12739930,12749533,12765455,12776137	0.755556
testis_male_adult_54_years	chr8	216405	216432	216431	-	RAMPAGE_only	2	2	9	0.334188	2.500000	chr8	216169	216969	LINE|L1|L1MC3	+	chr8	213250	213707	RPL23AP53|ENST00000521854.1	-	213250	213707	0.888889
testis_male_adult_54_years	chr6	28335474	28335507	28335491	-	High_confidence	8	10	58	2.153657	5.538945	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.706897
testis_male_adult_54_years	chr7	130984057	130984085	130984057	-	RAMPAGE_only	1	1	8	0.297056	2.807355	chr7	130983943	130984021	SINE|MIR|MIR	-	chr7	130944168	131081013	LINC-PINT|ENST00000646587.1	-	130944168,130984052,131052424,131080865	130945835,130984109,131052555,131081013	0.875000
testis_male_adult_54_years	chr21	32641939	32641946	32641945	-	High_confidence	3	4	7	0.259924	2.584963	chr21	32641733	32641912	SINE|MIR|MIR3	-	chr21	32631777	32641945	SYNJ1|ENST00000418301.3	-	32631777,32634860,32638907,32639670,32641895	32631801,32634881,32639125,32639779,32641945	0.857143
testis_male_adult_54_years	chr11	103325835	103325861	103325854	+	RAMPAGE_only	8	8	20	0.742640	4.037401	chr11	103325546	103327287	LINE|L1|L1P4a	-	chr11	103358242	103479345	DYNC2H1|ENST00000533197.1	+	103358242,103435942,103455185,103456274,103468588,103479094	103358359,103436032,103455295,103456356,103468705,103479345	0.700000
testis_male_adult_54_years	chr19	58230444	58230458	58230444	+	High_confidence	6	7	17	0.631244	3.202820	chr19	58230271	58230516	SINE|MIR|MIR	-	chr19	58229470	58312386	STRG.340351.1	+	58229470,58230393,58243964,58246300,58246710,58277182,58285716,58286109,58294097,58306087,58312165	58229570,58230462,58244056,58246427,58246794,58279147,58285843,58286205,58295581,58306216,58312386	0.705882
testis_male_adult_54_years	chr9	38604157	38604241	38604173	-	RAMPAGE_only	6	6	51	1.893733	5.079001	chr9	38604017	38604311	SINE|Alu|AluSc	+	chr9	38566259	38600258	STRG.201387.4	-	38566259,38569400,38571121,38572005,38573083,38575475,38577052,38577866,38586182,38588550,38593759,38595485	38569247,38569573,38571201,38572059,38573129,38575698,38577264,38578148,38586312,38588663,38593909,38600258	0.921569
testis_male_adult_54_years	chr2	65339046	65339054	65339046	-	RAMPAGE_only	7	7	16	0.594112	3.577820	chr2	65338266	65339718	Retroposon|SVA|SVA_D	+	chr2	65312992	65366650	SPRED2|ENST00000443619.6	-	65312992,65316733,65331986,65334604,65344718,65366589	65314169,65316883,65332051,65334773,65344896,65366650	0.812500
testis_male_adult_54_years	chr11	91794223	91794224	91794223	-	High_confidence	10	10	11	0.408452	2.721928	chr11	91794002	91794543	LTR|ERV1|MER51A	-	chr11	91790527	91794289	STRG.238708.1	-	91790527,91793783	91793250,91794289	0.909091
testis_male_adult_54_years	chr7	116286808	116286814	116286813	+	High_confidence	9	12	25	0.928300	3.642490	chr7	116286478	116286828	LINE|L1|HAL1b	-	chr7	116286795	116349613	STRG.171963.1	+	116286795,116288046,116289851,116319640,116322801,116337119,116339822,116349358	116287428,116288114,116290050,116319759,116322888,116337181,116339954,116349613	0.920000
testis_male_adult_54_years	chrY	3786281	3786334	3786281	+	High_confidence	69	99	303	11.250999	6.991512	chrY	3785809	3788528	LTR|ERV1|LTR46-int	-	chrY	3786278	3838594	STRG.371674.1	+	3786278,3800441,3803828,3804384	3786390,3800746,3803952,3838594	0.716172
testis_male_adult_54_years	chr19	49867876	49867885	49867876	-	High_confidence	2	2	9	0.334188	2.750000	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49863730	49867880	PNKP|ENST00000636214.1	-	49863730,49863963,49864178,49864323,49865126,49866398,49867053,49867678	49863760,49864071,49864236,49864403,49865242,49866445,49867217,49867880	0.777778
testis_male_adult_54_years	chr3	176817003	176817008	176817007	-	High_confidence	5	5	10	0.371320	3.169925	chr3	176816891	176817113	LTR|ERV1|MER101B	+	chr3	176814154	176817001	LINC01209|NR_110819.1	-	176814154,176816173	176815726,176817001	0.900000
testis_male_adult_54_years	chr22	20081678	20081681	20081680	+	RAMPAGE_only	24	30	38	1.411016	4.537845	chr22	20081589	20082044	LINE|L2|L2a	+	chr22	20080231	20111261	STRG.354358.3	+	20080231,20087161,20089668,20089975,20091434,20091868,20092808,20094712,20106176,20106591,20107270,20108889,20110024	20086683,20087321,20089811,20090258,20091632,20091970,20092907,20094795,20106277,20106698,20107398,20109003,20111261	0.947368
testis_male_adult_54_years	chr1	65002435	65002472	65002471	-	High_confidence	31	34	121	4.492973	6.429170	chr1	65002360	65002589	SINE|MIR|MIRb	+	chr1	64974614	65002431	LINC01359|ENST00000647968.1	-	64974614,64979562,64979810,64989434,64991297,64993230,64993471,64994986,65001897,65002328	64974715,64979732,64979868,64989494,64991444,64993355,64993581,64995088,65001965,65002431	0.520661
testis_male_adult_54_years	chr7	15396574	15396575	15396574	-	High_confidence	155	158	177	6.572366	6.407808	chr7	15396179	15397560	LTR|ERV1|LTR12D	-	chr7	15200437	15396594	STRG.159325.2	-	15200437,15365513,15366139,15385445,15387405,15390670,15390839,15394112,15396045	15201359,15365619,15366222,15385562,15387540,15390750,15390905,15394179,15396594	0.847458
testis_male_adult_54_years	chr3	78850084	78850110	78850084	-	RAMPAGE_only	16	16	69	2.562109	5.434186	chr3	78849877	78850218	DNA|TcMar-Tigger|Tigger3a	+	chr3	78598810	79018544	ROBO1|ENST00000467549.5	-	78598810,78600112,78606732,78614647,78617634,78627320,78631160,78633934,78635772,78639743,78646147,78651731,78657097,78659685,78661029,78661992,78667882,78668133,78668483,78670095,78685745,78688647,78693347,78714396,78717274,78717762,78746742,78938600,79018406	78598927,78600309,78607041,78614800,78618041,78627569,78631305,78634042,78635943,78639898,78646190,78651929,78657269,78659807,78661261,78662114,78668049,78668302,78668565,78670301,78685917,78688772,78693356,78714524,78717413,78717883,78746900,78938927,79018544	0.913043
testis_male_adult_54_years	chr6	105370451	105370454	105370453	-	RAMPAGE_only	3	5	8	0.297056	2.750000	chr6	105370327	105371212	LINE|L1|L1MC1	+	chr6	105277564	105403084	PREP|ENST00000369110.7	-	105277564,105281745,105282450,105285485,105288757,105323664,105328828,105333313,105352971,105368902,105373368,105376124,105377385,105397852,105402846	105278438,105281902,105282582,105285580,105288894,105323768,105329026,105333505,105353077,105369024,105373578,105376255,105377519,105397927,105403084	0.625000
testis_male_adult_54_years	chr20	35713450	35713482	35713450	-	High_confidence	2	2	13	0.482716	3.584963	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.769231
testis_male_adult_54_years	chr2	10120434	10120436	10120434	+	High_confidence	6	7	10	0.371320	3.121928	chr2	10120422	10120535	SINE|Alu|FLAM_C	+	chr2	10120697	10131418	RRM2|ENST00000641198.1	+	10120697,10122754,10122982,10123386,10123735,10124716,10126874,10127086,10128847,10129040,10129233	10120882,10122897,10123057,10123530,10123852,10124850,10126969,10127220,10128952,10129154,10131418	0.500000
testis_male_adult_54_years	chr12	104029774	104029794	104029779	-	High_confidence	7	7	29	1.076828	4.487123	chr12	104029734	104029848	SINE|MIR|MIR3	+	chr12	103988988	104029776	GLT8D2|ENST00000546436.5	-	103988988,103993391,103994334,103996734,103997450,103999396,104003134,104015012,104019629,104029695	103989577,103993504,103994501,103996847,103997535,103999514,104003306,104015105,104019676,104029776	0.758621
testis_male_adult_54_years	chr20	36604995	36605007	36604995	+	High_confidence	2	2	7	0.259924	2.807355	chr20	36604959	36605105	DNA|hAT-Charlie|MER5A	-	chr20	36605733	36612557	C20orf24|NR_026562.3	+	36605733,36607714,36607889,36609600,36612009	36606065,36607818,36608000,36609730,36612557	0.857143
testis_male_adult_54_years	chr1	45651964	45651991	45651990	-	High_confidence	7	7	21	0.779772	3.405822	chr1	45651932	45652028	LINE|L1|L1ME3C	+	chr1	45651038	45651826	AL604028.2|ENST00000437848.1	-	45651038	45651826	0.857143
testis_male_adult_54_years	chr21	42524957	42524989	42524957	+	High_confidence	18	18	33	1.225356	4.862576	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42524426	42537300	STRG.352508.5	+	42524426,42525775,42534697,42535471	42525179,42525857,42534830,42537300	0.818182
testis_male_adult_54_years	chr1	50451716	50451757	50451756	+	RAMPAGE_only	11	11	35	1.299620	4.707715	chr1	50451712	50451824	SINE|MIR|MIR3	-	chr1	50461468	50471150	AL049637.1|ENST00000424664.1	+	50461468,50462191,50469437,50470733,50471060	50461496,50462313,50469544,50470889,50471150	0.885714
testis_male_adult_54_years	chr9	132269437	132269438	132269437	-	RAMPAGE_only	6	6	8	0.297056	2.500000	chr9	132269273	132269389	SINE|MIR|MIR	-	chr9	132261355	132275382	SETX|ENST00000477049.1	-	132261355,132266126,132269614,132271709,132275255	132264985,132266249,132269702,132271808,132275382	0.875000
testis_male_adult_54_years	chr8	75665342	75665377	75665348	+	High_confidence	6	7	29	1.076828	4.110577	chr8	75664381	75666029	LTR|ERV1|LTR12C	-	chr8	75665356	75775612	STRG.186802.1	+	75665356,75775445	75666113,75775612	0.758621
testis_male_adult_54_years	chr13	46466005	46466006	46466005	-	High_confidence	38	39	41	1.522412	4.964904	chr13	46465839	46466098	LTR|ERV1|HERVE-int	+	chr13	46460647	46466006	LINC01198|ENST00000594428.6	-	46460647,46464674,46465842	46461170,46464819,46466006	0.707317
testis_male_adult_54_years	chr12	40620725	40620747	40620746	+	High_confidence	7	7	22	0.816904	4.061482	chr12	40620498	40621778	LTR|ERV1|LTR12E	+	chr12	40620721	40621778	STRG.251335.1	+	40620721	40621778	0.636364
testis_male_adult_54_years	chr3	100183975	100184014	100184001	+	RAMPAGE_only	4	4	19	0.705508	3.683542	chr3	100183754	100184191	LTR|ERVL|MLT2B4	+	chr3	100185686	100211766	TMEM30CP|ENST00000637814.1	+	100185686,100189940,100193977,100195167,100195685,100208027,100211575	100185878,100190051,100194079,100195255,100195826,100208237,100211766	0.631579
testis_male_adult_54_years	chr6	85865848	85865888	85865848	+	High_confidence	4	4	16	0.594112	3.577820	chr6	85864765	85867347	LTR|ERV1|HERV3-int	-	chr6	85865674	85866274	STRG.145966.1	+	85865674	85866274	0.687500
testis_male_adult_54_years	chr18	36807865	36807870	36807865	-	High_confidence	4	4	12	0.445584	3.459432	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.750000
testis_male_adult_54_years	chr1	91498668	91498711	91498682	-	High_confidence	15	16	68	2.524977	5.063682	chr1	91498558	91498983	LINE|L2|L2	+	chr1	91498362	91498686	STRG.12392.1	-	91498362	91498686	0.529412
testis_male_adult_54_years	chr13	63740746	63740747	63740746	+	RAMPAGE_only	101	104	109	4.047389	4.026504	chr13	63740314	63740912	LTR|ERV1|HERVE-int	-	chr13	63738110	63742569	STRG.270366.4	+	63738110,63740765,63742351	63740243,63740909,63742569	0.779817
testis_male_adult_54_years	chr13	108886634	108886751	108886662	+	High_confidence	34	40	150	5.569802	5.295395	chr13	108886377	108886830	LTR|ERV1|MER61D	-	chr13	108886098	109127685	STRG.275927.1	+	108886098,108888371,108898015,108910002,108957687,108961538,108962423,108964760,108992375,109008896,109019710,109046915,109052299,109055045,109055389,109100784,109120369,109125111,109127281	108886462,108888477,108898133,108910150,108957799,108961656,108962495,108964902,108992448,109009049,109019911,109046991,109052475,109055126,109055595,109100887,109120466,109125358,109127685	0.966667
testis_male_adult_54_years	chr7	154057631	154057648	154057631	-	RAMPAGE_only	6	7	15	0.556980	3.807355	chr7	154057429	154058031	LTR|ERV1|HERVE-int	+	chr7	154055584	154059561	AC006019.1|ENST00000425591.1	-	154055584,154057432	154055925,154059561	0.666667
testis_male_adult_54_years	chr7	113593764	113593815	113593781	-	RAMPAGE_only	4	4	17	0.631244	3.852169	chr7	113593157	113594562	LTR|ERV1|LTR12C	+	chr7	113452321	113487714	STRG.171510.1	-	113452321,113485271	113452489,113487714	0.882353
testis_male_adult_54_years	chr3	125971122	125971135	125971134	+	RAMPAGE_only	3	3	10	0.371320	3.121928	chr3	125970793	125971346	LINE|L1|L1MEd	-	chr3	125969238	125977993	ROPN1B|ENST00000510450.1	+	125969238,125972042,125975562,125977003	125969400,125972170,125975680,125977993	0.900000
testis_male_adult_54_years	chr3	169812869	169812878	169812869	+	RAMPAGE_only	5	6	9	0.334188	2.947703	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169821921	169837773	LRRIQ4|NM_001080460.1	+	169821921,169828758,169830491,169832986,169837478	169822941,169828932,169830630,169833183,169837773	1.000000
testis_male_adult_54_years	chr1	39310260	39310300	39310292	+	RAMPAGE_only	3	5	26	0.965432	4.251629	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.884615
testis_male_adult_54_years	chr4	146111669	146111670	146111669	+	High_confidence	6	7	8	0.297056	3.000000	chr4	146111523	146111735	SINE|MIR|MIRb	-	chr4	146111636	146113442	STRG.105420.1	+	146111636,146113086	146111885,146113442	0.750000
testis_male_adult_54_years	chr11	8784518	8784525	8784518	+	High_confidence	39	39	87	3.230485	5.356421	chr11	8784560	8784859	SINE|Alu|AluSx	+	chr11	8785400	8810231	AC026894.1|ENST00000527725.1	+	8785400,8787053,8810076	8785462,8787286,8810231	0.850575
testis_male_adult_54_years	chr14	73713086	73713172	73713171	-	RAMPAGE_only	34	39	154	5.718330	5.586669	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	0.993506
testis_male_adult_54_years	chr8	128827123	128827139	128827123	-	High_confidence	2	2	7	0.259924	2.584963	chr8	128824979	128827120	Retroposon|SVA|SVA_F	-	chr8	128826630	128827238	STRG.194518.1	-	128826630	128827238	0.714286
testis_male_adult_54_years	chr1	108939644	108939645	108939644	-	High_confidence	6	6	6	0.222792	2.584963	chr1	108939309	108939608	SINE|Alu|AluY	-	chr1	108934657	108939184	STRG.14252.8	-	108934657,108937076,108938165	108934942,108937418,108939184	1.000000
testis_male_adult_54_years	chr5	16620320	16620338	16620337	+	RAMPAGE_only	3	4	12	0.445584	3.459432	chr5	16620204	16620558	LTR|ERVL-MaLR|THE1D	+	chr5	16615925	16629969	AC022113.1|ENST00000499131.1	+	16615925,16621777,16625414,16629453	16616486,16622032,16625756,16629969	0.666667
testis_male_adult_54_years	chr3	158740410	158740411	158740410	+	High_confidence	6	6	6	0.222792	2.584963	chr3	158740391	158740617	SINE|MIR|MIR	+	chr3	158740416	158743592	AC080013.1|ENST00000477589.5	+	158740416,158742029,158742371,158742780	158740466,158742144,158742481,158743592	0.833333
testis_male_adult_54_years	chr11	38337187	38337235	38337230	-	High_confidence	13	13	96	3.564673	5.313951	chr11	38337000	38337314	SINE|Alu|AluY	+	chr11	38122991	38337204	STRG.233440.1	-	38122991,38170492,38200934,38325174,38336836	38123113,38170591,38201048,38325269,38337204	0.885417
testis_male_adult_54_years	chr3	79502239	79502270	79502269	-	High_confidence	10	10	25	0.928300	4.243856	chr3	79502073	79503465	LTR|ERV1|LTR12C	+	chr3	79500149	79502437	STRG.71176.1	-	79500149	79502437	0.800000
testis_male_adult_54_years	chr14	23636366	23636367	23636366	+	High_confidence	12	12	12	0.445584	3.418296	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	0.916667
testis_male_adult_54_years	chr10	28796094	28796127	28796126	-	High_confidence	2	2	8	0.297056	2.807355	chr10	28795966	28796239	LTR|ERVL-MaLR|MLT1J1	-	chr10	28792568	28796113	LINC00837|ENST00000446012.1	-	28792568,28795893	28792944,28796113	0.500000
testis_male_adult_54_years	chr20	40909900	40909901	40909900	-	High_confidence	129	130	135	5.012821	4.813605	chr20	40909466	40911035	LTR|ERV1|LTR12C	-	chr20	40909392	40909888	STRG.344151.1	-	40909392	40909888	0.948148
testis_male_adult_54_years	chr11	108223495	108223517	108223516	+	High_confidence	3	4	7	0.259924	2.521641	chr11	108223533	108223589	SINE|MIR|MIR	+	chr11	108223115	108253996	STRG.242080.6	+	108223115,108227594,108227775,108229177,108235669,108243952,108244787,108246963,108248932,108250700,108251836,108252816,108253813	108224871,108227696,108227888,108229323,108235834,108244118,108245026,108247127,108249102,108251072,108252031,108252912,108253996	1.000000
testis_male_adult_54_years	chr20	39663551	39663552	39663551	-	RAMPAGE_only	12	12	13	0.482716	3.022055	chr20	39663276	39663518	SINE|MIR|MIRb	-	chr20	39655322	39661015	STRG.344043.1	-	39655322,39656189,39660462	39655451,39656634,39661015	0.692308
testis_male_adult_54_years	chr3	191316493	191316497	191316493	-	High_confidence	6	6	16	0.594112	3.773557	chr3	191316223	191317555	LTR|ERV1|LTR12C	-	chr3	191268336	191316621	STRG.86521.1	-	191268336,191273385,191275251,191276806,191278071,191282086,191316035	191268441,191273564,191275345,191276844,191278170,191282313,191316621	0.875000
testis_male_adult_54_years	chr2	148712573	148712586	148712573	+	RAMPAGE_only	11	13	33	1.225356	4.476410	chr2	148712607	148712899	SINE|Alu|AluJr4	+	chr2	148690213	148787568	STRG.48030.3	+	148690213,148743621,148761781,148762669,148764954,148769150,148770791,148771043,148781643,148783596,148784667,148786304	148690373,148754133,148761930,148762802,148765146,148769240,148770937,148771387,148781780,148783756,148785001,148787568	0.606061
testis_male_adult_54_years	chr2	195573057	195573076	195573057	-	High_confidence	5	5	9	0.334188	2.725481	chr2	195573020	195573113	LTR|ERVL-MaLR|MLT1M	-	chr2	195569627	195572970	LINC01827|ENST00000432711.1	-	195569627,195572650	195569862,195572970	0.777778
testis_male_adult_54_years	chr19	38376015	38376076	38376075	+	RAMPAGE_only	16	16	49	1.819469	4.653089	chr19	38375972	38376110	SINE|MIR|MIR	-	chr19	38374758	38383824	PSMD8|ENST00000602911.5	+	38374758,38376159,38376351,38379239,38380898,38382116,38383252	38374961,38376232,38376454,38379405,38380999,38382228,38383824	0.979592
testis_male_adult_54_years	chr10	13332005	13332006	13332005	-	RAMPAGE_only	7	7	11	0.408452	3.277613	chr10	13331741	13332516	LINE|L1|L1MB7	+	chr10	13318079	13347690	STRG.214490.2	-	13318079,13322834,13328350,13329697,13333816,13336242,13338704,13344757,13347276	13319356,13323047,13328450,13329788,13333971,13336350,13338808,13345028,13347690	0.636364
testis_male_adult_54_years	chr4	14992877	14992889	14992888	-	RAMPAGE_only	4	4	9	0.334188	3.000000	chr4	14992571	14992973	LINE|L1|L1MA7	-	chr4	14977290	15003660	STRG.90087.2	-	14977290,14990453,14995253,15000388	14985376,14993449,14995350,15003660	0.777778
testis_male_adult_54_years	chr2	10005981	10005987	10005986	-	High_confidence	114	114	289	10.731151	6.466668	chr2	10005564	10006737	LTR|ERV1|LTR12D	-	chr2	10004256	10005988	STRG.30418.1	-	10004256	10005988	0.989619
testis_male_adult_54_years	chr4	154355691	154355732	154355723	-	High_confidence	15	27	84	3.119089	5.920061	chr4	154355671	154356858	DNA|TcMar-Tigger|Tigger3b	+	chr4	154240551	154355716	STRG.106280.1	-	154240551,154242641,154255518,154259544,154269899,154297850,154304668,154305096,154315747,154320378,154322330,154328092,154329522,154332477,154334867,154352449,154354724,154355588	154240823,154242772,154255670,154259756,154270013,154298708,154304878,154305231,154315987,154321222,154322488,154328192,154329710,154333494,154335104,154352508,154354820,154355716	0.642857
testis_male_adult_54_years	chr1	33872505	33872554	33872505	+	RAMPAGE_only	11	12	30	1.113960	4.513153	chr1	33872097	33873316	LTR|ERVL-MaLR|MLT1F2-int	+	chr1	33864953	33873647	STRG.3894.7	+	33864953,33869202,33870871,33872626	33868506,33870494,33871008,33873647	0.900000
testis_male_adult_54_years	chr14	102266464	102266488	102266464	-	RAMPAGE_only	2	2	10	0.371320	2.947703	chr14	102266307	102266549	SINE|Alu|AluJb	-	chr14	102250894	102305134	STRG.289512.12	-	102250894,102251755,102251916,102263545,102265822,102304961	102250990,102251804,102251995,102263616,102283592,102305134	0.900000
testis_male_adult_54_years	chr19	2393149	2393150	2393149	+	High_confidence	509	509	530	19.679966	5.232103	chr19	2392567	2393567	LTR|ERV1|LTR12C	+	chr19	2393156	2426249	STRG.331349.1	+	2393156,2396538,2398794,2401974,2403081,2405373,2408355,2409325,2410257,2413699,2415669,2416537,2418001,2421853,2424088,2425001,2425356,2425926	2393531,2396666,2399193,2402016,2403195,2405545,2408630,2409419,2410394,2414018,2415841,2416809,2418138,2422247,2424257,2425267,2425493,2426249	0.886792
testis_male_adult_54_years	chr1	54243238	54243293	54243238	-	RAMPAGE_only	4	4	17	0.631244	3.750000	chr1	54243091	54243229	SINE|MIR|MIR3	-	chr1	54226919	54255107	STRG.7161.6	-	54226919,54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54252547	54227160,54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54252525,54255107	0.882353
testis_male_adult_54_years	chr5	34244692	34244699	34244692	-	RAMPAGE_only	3	3	9	0.334188	3.000000	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34218343	AC138409.2|ENST00000507274.1	-	34175821,34179012,34182679,34218294	34175957,34179097,34182867,34218343	0.666667
testis_male_adult_54_years	chr6	169692597	169692640	169692639	-	RAMPAGE_only	11	11	33	1.225356	4.518397	chr6	169691841	169692990	LINE|L1|L1PBa	+	chr6	169664176	169701930	STRG.156909.11	-	169664176,169672254,169688816,169689126,169701550	169670693,169672396,169689012,169695065,169701930	0.878788
testis_male_adult_54_years	chr3	195944168	195944180	195944168	-	RAMPAGE_only	8	8	13	0.482716	3.418296	chr3	195943932	195944206	LTR|ERVL|MLT2B4	+	chr3	195922660	195954107	STRG.87126.1	-	195922660,195928963,195932415,195937121,195941452	195924210,195929081,195937096,195941170,195954107	0.923077
testis_male_adult_54_years	chr17	55458576	55458577	55458576	+	High_confidence	8	8	12	0.445584	3.188722	chr17	55458350	55459213	LTR|ERV1|LTR1A2	+	chr17	55458516	55458978	STRG.319765.1	+	55458516	55458978	0.833333
testis_male_adult_54_years	chr7	31695962	31695972	31695971	+	High_confidence	17	17	42	1.559544	5.211211	chr7	31695752	31696159	LTR|ERVL-MaLR|MLT1J1	-	chr7	31695962	31707596	PPP1R17|ENST00000498609.1	+	31695962,31696964,31707203,31707514	31696078,31697117,31707420,31707596	0.738095
testis_male_adult_54_years	chr5	82279750	82279751	82279750	+	RAMPAGE_only	7	7	7	0.259924	2.807355	chr5	82279608	82280053	LINE|L2|L2a	-	chr5	82278301	82282112	STRG.120777.1	+	82278301	82282112	1.000000
testis_male_adult_54_years	chr14	91425815	91425821	91425815	+	High_confidence	31	31	52	1.930865	4.942636	chr14	91425625	91425984	LTR|ERVL-MaLR|THE1B	+	chr14	91424996	91430959	STRG.287760.1	+	91424996	91430959	0.865385
testis_male_adult_54_years	chr1	144826667	144826702	144826672	+	RAMPAGE_only	29	29	95	3.527541	6.135285	chr1	144826137	144827246	LINE|L1|L1MEd	+	chr1	144823707	144827789	STRG.15911.1	+	144823707	144827789	0.936842
testis_male_adult_54_years	chr4	31506422	31506454	31506430	+	High_confidence	27	27	102	3.787465	6.094102	chr4	31501795	31507425	LTR|ERVL|HERVL-int	+	chr4	31506665	31558821	LINC02501|ENST00000510420.1	+	31506665,31557498,31558651	31506825,31557594,31558821	0.578431
testis_male_adult_54_years	chr20	421172	421176	421175	+	High_confidence	3	3	7	0.259924	2.521641	chr20	421066	421264	SINE|MIR|MIRb	-	chr20	421941	427488	RBCK1|ENST00000621487.1	+	421941,427312	422238,427488	0.571429
testis_male_adult_54_years	chr9	15232438	15232470	15232469	-	High_confidence	4	4	17	0.631244	3.969816	chr9	15231922	15232688	LINE|L1|L1PB4	+	chr9	15171928	15232444	TTC39B|ENST00000507285.5	-	15171928,15175018,15177696,15182306,15185279,15186943,15187970,15189573,15189724,15190553,15191189,15192589,15199860,15203822,15210087,15211265,15214138,15224339,15225916,15232231	15172109,15175135,15177814,15182415,15185406,15187035,15188132,15189633,15189792,15190662,15191255,15192695,15199925,15203890,15210164,15211397,15214249,15224505,15226012,15232444	0.588235
testis_male_adult_54_years	chr16	75318089	75318117	75318116	-	RAMPAGE_only	12	13	34	1.262488	4.572469	chr16	75317828	75318154	SINE|Alu|AluSx	+	chr16	75293697	75306545	CFDP1|ENST00000570103.5	-	75293697,75305023,75306386	75294042,75305182,75306545	0.970588
testis_male_adult_54_years	chr2	190090382	190090383	190090382	+	High_confidence	167	171	229	8.503231	6.191062	chr2	190090247	190090528	LTR|ERVL-MaLR|MLT1F	+	chr2	190090388	190164051	STRG.54199.3	+	190090388,190090896,190095518,190163935	190090652,190090970,190095602,190164051	0.812227
testis_male_adult_54_years	chr7	77534304	77534354	77534304	-	High_confidence	4	4	36	1.336752	4.718129	chr7	77532903	77534787	Retroposon|SVA|SVA_D	-	chr7	77513112	77535167	STRG.165866.1	-	77513112,77534208	77515430,77535167	0.583333
testis_male_adult_54_years	chr4	75988863	75988876	75988863	-	RAMPAGE_only	4	4	12	0.445584	3.459432	chr4	75988737	75989498	LINE|L2|L2a	+	chr4	75973359	75990931	SDAD1|ENST00000503411.5	-	75973359,75974075,75975743,75975923,75977645,75981371,75981932,75990751	75973391,75974133,75975844,75975995,75977756,75981514,75982037,75990931	0.500000
testis_male_adult_54_years	chr11	111097287	111097367	111097351	-	High_confidence	35	35	148	5.495538	5.827585	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.878378
testis_male_adult_54_years	chr10	102449836	102449853	102449836	+	High_confidence	7	7	29	1.076828	4.582119	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.896552
testis_male_adult_54_years	chr12	6132629	6132659	6132629	-	High_confidence	5	6	14	0.519848	3.324863	chr12	6132431	6133983	LTR|ERV1|LTR12C	+	chr12	6128337	6132975	STRG.247383.12	-	6128337,6129003,6132263	6128601,6129124,6132975	0.571429
testis_male_adult_54_years	chr11	108412628	108412643	108412640	-	RAMPAGE_only	23	23	61	2.265053	5.481728	chr11	108412532	108412734	SINE|Alu|AluJb	+	chr11	108340158	108405528	C11orf65|ENST00000526725.1	-	108340158,108393207,108405428	108340364,108393378,108405528	0.557377
testis_male_adult_54_years	chr16	70590328	70590329	70590328	+	RAMPAGE_only	5	5	7	0.259924	2.521641	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.857143
testis_male_adult_54_years	chr11	46220690	46220715	46220695	-	High_confidence	8	8	32	1.188224	3.961406	chr11	46220687	46220786	LINE|L2|L2c	+	chr11	46213827	46220438	AC024475.3|ENST00000635389.1	-	46213827,46215726,46220362	46214224,46215891,46220438	0.937500
testis_male_adult_54_years	chr12	130651353	130651391	130651390	+	High_confidence	6	6	29	1.076828	4.494680	chr12	130651381	130651515	SINE|MIR|MIR	-	chr12	130651370	130660651	AC095350.1|ENST00000443685.4	+	130651370,130657822,130660033	130651479,130658806,130660651	0.896552
testis_male_adult_54_years	chr4	86117789	86117827	86117789	-	High_confidence	13	13	32	1.188224	4.567100	chr4	86117503	86118131	LTR|ERVL|LTR67B	+	chr4	86095601	86117827	MAPK10|ENST00000641543.1	-	86095601,86098420,86101051,86101893,86103185,86107222,86117557	86095716,86098595,86101217,86102032,86103244,86107352,86117827	0.625000
testis_male_adult_54_years	chr12	100431126	100431128	100431127	+	High_confidence	171	305	309	11.473791	5.475015	chr12	100430118	100431544	LTR|ERV1|LTR12C	+	chr12	100431140	100432208	STRG.260021.1	+	100431140	100432208	0.967638
testis_male_adult_54_years	chr3	69999732	69999755	69999732	+	High_confidence	38	43	64	2.376449	5.561220	chr3	69999500	70000000	LTR|ERV1|LTR1A2	+	chr3	69999732	70015318	SAMMSON|ENST00000483525.2	+	69999732,70012356,70013519,70013793	69999867,70012598,70013672,70015318	0.750000
testis_male_adult_54_years	chr2	117804163	117804174	117804163	-	High_confidence	2	2	8	0.297056	2.807355	chr2	117803780	117809809	LINE|L1|L1PA3	+	chr2	117757562	117804174	AC009312.1|ENST00000457110.1	-	117757562,117760372,117785529,117804131	117757774,117760591,117785647,117804174	0.625000
testis_male_adult_54_years	chr1	112699206	112699209	112699207	+	High_confidence	8	16	21	0.779772	3.984184	chr1	112699125	112699293	DNA|hAT-Charlie|MER5B	+	chr1	112698307	112700739	MOV10|ENST00000490413.1	+	112698307,112698714,112699457,112699893,112700415	112698478,112698789,112699810,112700340,112700739	0.952381
testis_male_adult_54_years	chr2	73925210	73925253	73925252	+	RAMPAGE_only	7	7	32	1.188224	4.348394	chr2	73924927	73925456	LTR|ERV1|MER51A	-	chr2	73926825	73958961	DGUOK|ENST00000264093.8	+	73926825,73938909,73946718,73950584,73957124,73958145,73958709	73927052,73939022,73946906,73950732,73957240,73958245,73958961	0.812500
testis_male_adult_54_years	chr3	70617624	70617672	70617624	-	High_confidence	35	37	110	4.084521	6.133321	chr3	70617119	70617866	LTR|ERV1|LTR17	+	chr3	70616967	70617648	STRG.69749.1	-	70616967	70617648	0.590909
testis_male_adult_54_years	chr3	54627911	54627930	54627911	+	RAMPAGE_only	3	3	11	0.408452	3.027169	chr3	54627950	54628250	SINE|Alu|AluYm1	+	chr3	54197370	54885586	CACNA2D3|ENST00000468658.1	+	54197370,54320441,54386714,54562799,54569794,54569953,54581802,54627786,54642127,54752598,54764217,54816852,54837158,54838567,54846392,54871538,54879017,54879349,54880795,54885280,54885488	54197507,54320558,54386774,54562931,54569855,54570104,54581877,54627876,54642241,54752677,54764351,54816870,54837230,54838648,54846467,54871622,54879089,54879411,54880863,54885326,54885586	0.545455
testis_male_adult_54_years	chr21	23030177	23030188	23030177	-	RAMPAGE_only	8	9	19	0.705508	3.947703	chr21	23029890	23030261	LTR|ERVL-MaLR|THE1D	-	chr21	22961364	22984758	STRG.349394.1	-	22961364,22984292	22966348,22984758	0.526316
testis_male_adult_54_years	chr5	162036703	162036745	162036715	+	RAMPAGE_only	5	5	19	0.705508	3.826875	chr5	162030925	162036952	LINE|L1|L1PA2	-	chr5	162061578	162155515	GABRG2|ENST00000638660.1	+	162061578,162093827,162095494,162097637,162101234,162103888,162142163,162149107,162151729,162153092	162061909,162093979,162095562,162097858,162101317,162104026,162142316,162149313,162151753,162155515	0.736842
testis_male_adult_54_years	chr18	30419562	30419599	30419598	+	High_confidence	49	50	135	5.012821	5.809731	chr18	30419378	30420028	LTR|ERV1|LTR12_	+	chr18	30419578	30420793	STRG.325592.1	+	30419578	30420793	0.985185
testis_male_adult_54_years	chr17	10769031	10769032	10769031	-	High_confidence	5	5	8	0.297056	3.000000	chr17	10768580	10769120	LTR|ERVL-MaLR|MLT1G1	+	chr17	10741266	10769016	AC015908.3|ENST00000579529.2	-	10741266,10768806	10741723,10769016	0.500000
testis_male_adult_54_years	chr7	93591351	93591383	93591382	+	High_confidence	3	3	10	0.371320	2.725481	chr7	93586902	93591767	LINE|L1|L1PA2	-	chr7	93591305	93591745	STRG.168748.1	+	93591305	93591745	0.600000
testis_male_adult_54_years	chr16	8114862	8114881	8114880	+	High_confidence	3	3	8	0.297056	2.807355	chr16	8114383	8115932	Retroposon|SVA|SVA_D	+	chr16	8115003	8157540	STRG.302401.1	+	8115003,8157470	8115235,8157540	0.500000
testis_male_adult_54_years	chr15	51901219	51901266	51901259	+	High_confidence	5	5	32	1.188224	4.615061	chr15	51900843	51901546	LINE|L1|L1MB7	-	chr15	51901265	51911124	TMOD3|ENST00000560725.1	+	51901265,51901891,51908775,51911039	51901492,51902036,51908862,51911124	0.687500
testis_male_adult_54_years	chr13	56735591	56735622	56735621	-	High_confidence	37	39	195	7.240742	6.343661	chr13	56735426	56736646	LTR|ERV1|LTR12C	+	chr13	56615807	56735604	STRG.269152.1	-	56615807,56735396	56616376,56735604	0.589744
testis_male_adult_54_years	chr4	38532228	38532241	38532228	+	High_confidence	11	11	31	1.151092	4.297276	chr4	38532097	38532260	SINE|MIR|MIR3	-	chr4	38532253	38546650	STRG.93272.1	+	38532253,38546375	38532347,38546650	0.612903
testis_male_adult_54_years	chr20	38319867	38319890	38319885	+	RAMPAGE_only	17	17	37	1.373884	4.790270	chr20	38319803	38319948	SINE|MIR|MIRb	-	chr20	38317671	38335641	BPI|ENST00000489102.2	+	38317671,38318412,38320182,38323921,38324773,38326264,38327587,38331047,38334429,38335597	38317737,38318476,38320274,38324046,38324833,38326432,38327655,38331090,38334493,38335641	0.891892
testis_male_adult_54_years	chr22	39320306	39320372	39320371	-	High_confidence	3	3	23	0.854036	4.011365	chr22	39320325	39320622	SINE|Alu|AluSx3	-	chr22	39312883	39320389	RPL3|ENST00000465618.5	-	39312883,39313190,39313633,39314106,39314685,39315368,39316705,39317460,39318399,39319726	39312984,39313310,39313729,39314208,39314846,39315555,39317021,39317629,39318592,39320389	0.913043
testis_male_adult_54_years	chr20	57835021	57835023	57835021	-	High_confidence	6	11	17	0.631244	3.852169	chr20	57834782	57835177	LTR|ERVL-MaLR|MLT1C	-	chr20	57832986	57834548	STRG.346767.1	-	57832986,57834462	57833570,57834548	0.588235
testis_male_adult_54_years	chr19	13520302	13520315	13520302	-	High_confidence	2	2	8	0.297056	2.807355	chr19	13520110	13520424	LINE|L1|HAL1	-	chr19	13518974	13520309	CACNA1A|ENST00000587451.2	-	13518974,13520165	13519503,13520309	0.875000
testis_male_adult_54_years	chr2	232764519	232764564	232764563	+	High_confidence	19	19	34	1.262488	4.779094	chr2	232764038	232764765	LINE|CR1|L3	+	chr2	232764461	232790915	GIGYF2|ENST00000436349.5	+	232764461,232787149,232790697	232764610,232787329,232790915	0.617647
testis_male_adult_54_years	chr12	112470374	112470428	112470427	+	RAMPAGE_only	20	22	91	3.379013	5.790885	chr12	112470303	112470489	SINE|MIR|MIRb	-	chr12	112419111	112504764	PTPN11|ENST00000635625.1	+	112419111,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486462,112488442,112489023,112502143,112504694	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504764	0.736264
testis_male_adult_54_years	chr1	110395732	110395737	110395736	-	High_confidence	16	19	31	1.151092	4.573557	chr1	110395418	110396904	LTR|ERV1|LTR12C	-	chr1	110395073	110395778	STRG.14512.6	-	110395073	110395778	0.870968
testis_male_adult_54_years	chr9	128780083	128780123	128780083	+	High_confidence	8	9	40	1.485280	4.660671	chr9	128779484	128781166	Retroposon|SVA|SVA_D	+	chr9	128779644	128781749	STRG.211022.1	+	128779644,128781572	128780299,128781749	0.825000
testis_male_adult_54_years	chr5	34918377	34918379	34918377	+	RAMPAGE_only	4	6	8	0.297056	2.750000	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	1.000000
testis_male_adult_54_years	chr8	9001992	9001999	9001992	-	High_confidence	5	6	13	0.482716	3.700440	chr8	9001288	9002020	LTR|ERV1|LTR8	-	chr8	9000448	9002843	STRG.179519.1	-	9000448	9002843	0.846154
testis_male_adult_54_years	chr2	171414675	171414677	171414676	-	RAMPAGE_only	4	7	10	0.371320	2.947703	chr2	171414444	171414743	SINE|Alu|AluJb	+	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.600000
testis_male_adult_54_years	chr3	31870103	31870133	31870129	-	RAMPAGE_only	2	2	11	0.408452	2.921928	chr3	31869938	31871523	LTR|ERV1|LTR12C	+	chr3	31646301	31830180	STRG.65417.5	-	31646301,31664078,31670796,31702358,31733256,31747909,31830039	31662116,31668824,31684114,31702508,31733411,31748120,31830180	0.727273
testis_male_adult_54_years	chr1	155679929	155679930	155679929	-	High_confidence	8	9	9	0.334188	2.500000	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	0.888889
testis_male_adult_54_years	chr12	10225994	10226031	10226014	+	High_confidence	7	9	46	1.708073	4.560700	chr12	10224515	10226197	LTR|ERV1|LTR12C	-	chr12	10225930	10229043	STRG.246746.1	+	10225930	10229043	0.608696
testis_male_adult_54_years	chr4	48134563	48134578	48134577	-	High_confidence	8	10	28	1.039696	4.384517	chr4	48134448	48134630	SINE|MIR|MIR3	-	chr4	48066392	48134256	TXK|ENST00000264316.8	-	48066392,48071516,48073934,48076401,48079911,48086465,48089749,48094076,48095142,48104900,48110537,48112306,48113206,48114347,48134154	48067705,48071674,48074053,48076466,48080128,48086637,48089824,48094204,48095222,48104955,48110603,48112512,48113309,48114402,48134256	0.571429
testis_male_adult_54_years	chr2	173282036	173282037	173282036	-	High_confidence	201	211	228	8.466099	5.871252	chr2	173281737	173283149	LTR|ERV1|LTR12C	-	chr2	173197711	173282036	MAP3K20-AS1|ENST00000423106.2	-	173197711,173207546,173209646,173212668,173214279,173215625,173271510,173281681	173198824,173207658,173209945,173212791,173214496,173215836,173271618,173282036	0.877193
testis_male_adult_54_years	chr6	13044568	13044602	13044568	+	RAMPAGE_only	3	3	9	0.334188	3.000000	chr6	13044369	13044648	LTR|ERVL-MaLR|MLT1K	-	chr6	13053456	13230404	PHACTR1|ENST00000434977.1	+	13053456,13160203,13182518,13184798,13230173	13053529,13160284,13182686,13185005,13230404	0.555556
testis_male_adult_54_years	chr1	51855332	51855345	51855332	-	RAMPAGE_only	2	2	10	0.371320	2.947703	chr1	51854767	51855385	LTR|ERV1|LTR39	+	chr1	51789211	51840454	NRDC|ENST00000485608.5	-	51789211,51789567,51790532,51790899,51791577,51792045,51792376,51794471,51794822,51798248,51800555,51803813,51805509,51806793,51809314,51810280,51811993,51814034,51814550,51814692,51816311,51818065,51819799,51821497,51823663,51825286,51827795,51834016,51836130,51836368,51840225	51789433,51789657,51790649,51790990,51791661,51792098,51792424,51794610,51794854,51798411,51800683,51803964,51805561,51806913,51809401,51810404,51812098,51814089,51814609,51814813,51816389,51818135,51819873,51821555,51823786,51825382,51827869,51834170,51836212,51836438,51840454	0.900000
testis_male_adult_54_years	chr3	28262139	28262193	28262192	+	High_confidence	3	5	14	0.519848	3.700440	chr3	28261981	28262267	LINE|L1|HAL1ME	-	chr3	28261218	28319741	STRG.65197.1	+	28261218,28263290,28294433,28316332,28319508	28262265,28263380,28294529,28316423,28319741	0.642857
testis_male_adult_54_years	chr14	21372569	21372609	21372603	-	RAMPAGE_only	15	15	70	2.599241	5.461725	chr14	21372467	21372721	LTR|ERVL-MaLR|MLT1J	+	chr14	21369348	21383946	SUPT16H|ENST00000556309.5	-	21369348,21369749,21370335,21371873,21373337,21383861	21369355,21369896,21370488,21371970,21373430,21383946	0.800000
testis_male_adult_54_years	chr10	70939030	70939062	70939052	+	High_confidence	4	5	18	0.668376	3.852169	chr10	70939026	70939688	LINE|CR1|L3	+	chr10	70939052	70944144	LOC105378349|NR_134314.1	+	70939052,70943783	70939180,70944144	0.722222
testis_male_adult_54_years	chr6	112097926	112097974	112097973	+	High_confidence	8	8	24	0.891168	4.186704	chr6	112097910	112098143	DNA|hAT-Charlie|MER20	+	chr6	112097582	112107319	STRG.149567.6	+	112097582,112099269,112100669	112098215,112099408,112107319	0.916667
testis_male_adult_54_years	chr3	87376033	87376034	87376033	+	High_confidence	20	20	22	0.816904	4.021928	chr3	87375146	87376468	LTR|ERV1|LTR12C	+	chr3	87376022	87376503	STRG.72215.1	+	87376022	87376503	0.772727
testis_male_adult_54_years	chr10	131790187	131790229	131790213	-	High_confidence	4	4	19	0.705508	3.681881	chr10	131790106	131790265	LTR|ERVL-MaLR|MLT1I	-	chr10	131772397	131790199	LINC01164|NR_038365.1	-	131772397,131773856,131774883,131789656,131790076	131773687,131774205,131776295,131789866,131790199	0.894737
testis_male_adult_54_years	chr12	41005042	41005056	41005042	+	High_confidence	8	13	37	1.373884	4.627987	chr12	41002855	41006306	LINE|L1|L1PA13	-	chr12	41005038	41027918	CNTN1|ENST00000550305.1	+	41005038,41014227,41016681,41020336,41025149,41027856	41005110,41014298,41016916,41020440,41025336,41027918	0.891892
testis_male_adult_54_years	chr7	74180623	74180624	74180623	+	RAMPAGE_only	61	63	63	2.339317	5.393772	chr7	74180599	74180847	LINE|CR1|L3	+	chr7	74183821	74197096	STRG.168134.2	+	74183821,74187610,74189672,74189821,74190246,74194740,74195168	74183921,74187798,74189737,74189918,74190306,74194878,74197096	0.904762
testis_male_adult_54_years	chr8	90606064	90606065	90606064	-	High_confidence	249	309	349	12.959072	5.860956	chr8	90605768	90606660	LTR|ERV1|LTR12D	-	chr8	90592774	90606063	LINC01030|NR_104062.1	-	90592774,90593831,90605767	90593103,90593971,90606063	0.819484
testis_male_adult_54_years	chr7	15396356	15396423	15396422	-	High_confidence	5	5	20	0.742640	4.021928	chr7	15396179	15397560	LTR|ERV1|LTR12D	-	chr7	15200437	15396594	STRG.159325.2	-	15200437,15365513,15366139,15385445,15387405,15390670,15390839,15394112,15396045	15201359,15365619,15366222,15385562,15387540,15390750,15390905,15394179,15396594	0.950000
testis_male_adult_54_years	chr13	23248634	23248654	23248653	+	RAMPAGE_only	8	8	15	0.556980	3.521641	chr13	23248419	23248710	SINE|Alu|AluY	+	chr13	23180951	23325165	SGCG|ENST00000218867.3	+	23180951,23203694,23234610,23250629,23279358,23295414,23320636,23324367	23181075,23203889,23234712,23250717,23279478,23295487,23320760,23325165	0.533333
testis_male_adult_54_years	chr7	99555227	99555228	99555227	+	RAMPAGE_only	119	131	155	5.755462	4.595345	chr7	99555027	99555480	LTR|ERVL-MaLR|MLT1C	+	chr7	99553741	99555859	STRG.169739.1	+	99553741,99554735	99553932,99555859	0.980645
testis_male_adult_54_years	chr12	116661543	116661544	116661543	+	High_confidence	66	71	95	3.527541	5.707072	chr12	116660542	116661920	LTR|ERV1|LTR12C	+	chr12	116661581	116698065	AC125603.2|ENST00000546835.1	+	116661581,116697854	116662246,116698065	0.957895
testis_male_adult_54_years	chr4	75822930	75822959	75822958	+	High_confidence	22	22	46	1.708073	5.193707	chr4	75822883	75823137	SINE|MIR|MIR	+	chr4	75822873	75825520	STRG.96411.1	+	75822873,75825138	75823080,75825520	0.630435
testis_male_adult_54_years	chr2	162282826	162282831	162282826	-	RAMPAGE_only	11	11	29	1.076828	4.494680	chr2	162282721	162282894	LINE|L2|L2c	-	chr2	162267092	162311299	IFIH1|ENST00000649554.1	-	162267092,162267478,162268086,162272225,162273794,162276686,162277414,162278204,162279995,162281327,162282365,162288134,162293563,162306708,162310764,162311236	162267379,162267569,162268277,162272387,162273944,162276946,162277693,162278328,162280112,162281545,162282576,162288355,162293668,162306855,162310933,162311299	0.896552
testis_male_adult_54_years	chr8	67149294	67149329	67149294	+	RAMPAGE_only	7	7	33	1.225356	4.582913	chr8	67148873	67149394	LTR|ERVL-MaLR|MLT1F1	-	chr8	67157626	67195518	CSPP1|ENST00000521168.5	+	67157626,67158446,67158990,67161810,67163731,67164390,67172415,67175295,67177679,67179862,67190649,67195381	67157857,67158596,67159137,67161915,67163798,67164508,67172555,67175436,67177726,67179926,67190759,67195518	0.787879
testis_male_adult_54_years	chr15	33128859	33128860	33128859	-	High_confidence	596	671	677	25.138372	6.960510	chr15	33128552	33129144	LTR|ERV1|LTR12_	-	chr15	32969069	33128844	STRG.291720.4	-	32969069,33008013,33064956,33088798,33092132,33128549	32969477,33008075,33065074,33088974,33092203,33128844	0.806499
testis_male_adult_54_years	chr14	93909164	93909177	93909165	-	High_confidence	67	94	136	5.049954	6.318146	chr14	93908858	93909366	LTR|ERVL-MaLR|MLT1F1	-	chr14	93904527	93909206	STRG.288174.2	-	93904527,93907969,93908918	93905388,93908112,93909206	0.919118
testis_male_adult_54_years	chr2	110307228	110307253	110307228	+	High_confidence	7	7	41	1.522412	4.731884	chr2	110306676	110308064	Retroposon|SVA|SVA_B	+	chr2	110306744	110308016	STRG.43922.1	+	110306744	110308016	0.585366
testis_male_adult_54_years	chr12	32601284	32601298	32601284	+	RAMPAGE_only	5	5	9	0.334188	2.750000	chr12	32601190	32601318	SINE|MIR|MIRb	-	chr12	32582378	32644751	FGD4|ENST00000494977.1	+	32582378,32598496,32600409,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624658,32624975,32625653,32633548,32637649,32638654,32640275,32642760,32644593	32582467,32598586,32600509,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32624751,32625068,32625779,32633689,32637855,32638795,32640453,32642842,32644751	0.888889
testis_male_adult_54_years	chr12	70327487	70327511	70327487	+	High_confidence	9	9	28	1.039696	4.546594	chr12	70327440	70327536	SINE|MIR|MIR3	+	chr12	70327506	70335466	CNOT2|ENST00000548230.1	+	70327506,70329422,70330286,70332766,70335437	70327715,70329570,70330469,70332846,70335466	0.678571
testis_male_adult_54_years	chr6	14200747	14200748	14200747	-	High_confidence	299	334	385	14.295824	5.912147	chr6	14200596	14200914	LTR|ERVL-MaLR|MLT1A0	-	chr6	14200014	14200456	STRG.136484.1	-	14200014	14200456	0.890909
testis_male_adult_54_years	chr11	46090456	46090457	46090456	-	RAMPAGE_only	5	5	8	0.297056	2.521641	chr11	46090367	46090495	LINE|CR1|L3	+	chr11	45971347	46092205	PHF21A|ENST00000531959.5	-	45971347,45979759,46076753,46079133,46084165,46092182	45971367,45979966,46076840,46079166,46084302,46092205	0.625000
testis_male_adult_54_years	chr4	16120877	16120928	16120904	-	High_confidence	12	13	76	2.822033	5.725160	chr4	16120680	16120995	LTR|Gypsy|LTR104_Mam	-	chr4	16115023	16120898	STRG.90311.11	-	16115023,16117394,16120816	16115853,16117477,16120898	0.578947
testis_male_adult_54_years	chr5	178007959	178008010	178007959	+	RAMPAGE_only	10	10	25	0.928300	3.621654	chr5	178007812	178008132	SINE|Alu|AluYm1	+	chr5	178006722	178048999	STRG.133699.11	+	178006722,178035095,178036011,178039386,178041692,178042194,178046413,178046871,178047027,178048664	178020453,178035154,178038917,178039411,178041763,178042225,178046451,178046939,178047133,178048999	0.960000
testis_male_adult_54_years	chr12	124632497	124632526	124632519	-	High_confidence	4	4	14	0.519848	3.180833	chr12	124632366	124632559	SINE|MIR|MIR	+	chr12	124631833	124632576	STRG.262672.1	-	124631833	124632576	0.857143
testis_male_adult_54_years	chr2	128603415	128603431	128603430	-	High_confidence	3	3	7	0.259924	2.584963	chr2	128603325	128603495	DNA|hAT-Tip100|MER45A	-	chr2	128602848	128603468	STRG.45833.1	-	128602848	128603468	0.714286
testis_male_adult_54_years	chr13	99496638	99496639	99496638	-	RAMPAGE_only	35	35	37	1.373884	3.892591	chr13	99496491	99497078	LTR|ERV1|MER51A	-	chr13	99486961	99499306	LINC01232|NR_110731.1	-	99486961,99496134,99496374,99497248,99498685	99487816,99496217,99496544,99497336,99499306	0.675676
testis_male_adult_54_years	chr13	19242386	19242401	19242400	-	RAMPAGE_only	12	12	26	0.965432	4.483856	chr13	19241653	19243438	LINE|L1|L1PBa	+	chr13	19201326	19256149	STRG.264527.2	-	19201326,19204339,19208482,19210874,19227247,19239532,19240200,19241524	19201822,19204509,19208600,19219775,19227432,19239783,19240305,19256149	0.730769
testis_male_adult_54_years	chr7	17846353	17846377	17846353	-	RAMPAGE_only	19	20	46	1.708073	5.099436	chr7	17846275	17846440	SINE|MIR|MIRb	-	chr7	17793419	17940451	SNX13|ENST00000409076.6	-	17793419,17796826,17798689,17799008,17801587,17803418,17814833,17816181,17821508,17826021,17830009,17834051,17834760,17839806,17845594,17850346,17850825,17868406,17873527,17875479,17875668,17888559,17890362,17891545,17893331,17897333,17940283	17794292,17796939,17798758,17799154,17801659,17803580,17814944,17816289,17821648,17826091,17830047,17834184,17834865,17840000,17845694,17850435,17850964,17868490,17873616,17875581,17875790,17888722,17890484,17891635,17893434,17897446,17940451	0.717391
testis_male_adult_54_years	chr11	44319215	44319242	44319241	-	High_confidence	14	14	55	2.042261	5.135727	chr11	44318979	44319195	SINE|MIR|MIRb	-	chr11	44318923	44319238	STRG.234125.1	-	44318923	44319238	0.618182
testis_male_adult_54_years	chr3	55609280	55609300	55609299	-	RAMPAGE_only	3	3	8	0.297056	2.750000	chr3	55609204	55609408	LTR|ERVL-MaLR|MLT1K	+	chr3	55510562	55607910	ERC2|ENST00000473469.5	-	55510562,55606750,55607872	55511276,55606966,55607910	0.750000
testis_male_adult_54_years	chr20	48359802	48359857	48359809	-	High_confidence	7	8	35	1.299620	4.843569	chr20	48359601	48359776	DNA|hAT-Charlie|MER5A	-	chr20	48357786	48359871	STRG.345807.1	-	48357786,48359393	48359095,48359871	0.828571
testis_male_adult_54_years	chr2	238554633	238554656	238554650	-	High_confidence	38	38	134	4.975689	6.263822	chr2	238554483	238554778	LTR|ERVL-MaLR|MLT1A0	-	chr2	238528817	238554852	STRG.59975.1	-	238528817,238548539,238554473	238548497,238551547,238554852	0.746269
testis_male_adult_54_years	chr19	31520154	31520166	31520154	+	RAMPAGE_only	3	3	12	0.445584	3.084963	chr19	31519743	31520232	LTR|ERV1|MER66B	-	chr19	31542038	31554797	AC008794.1|ENST00000593063.1	+	31542038,31548507,31554582	31542320,31548570,31554797	0.666667
testis_male_adult_54_years	chr2	188606037	188606038	188606037	-	High_confidence	143	143	145	5.384142	6.163343	chr2	188605610	188606957	LTR|ERV1|LTR12C	-	chr2	188604720	188606239	STRG.53778.1	-	188604720	188606239	0.882759
testis_male_adult_54_years	chr4	189377462	189377463	189377462	-	High_confidence	15	15	20	0.742640	3.787144	chr4	189376979	189377469	LTR|ERVL-MaLR|MLT1G1	-	chr4	189376923	189377505	STRG.110925.1	-	189376923	189377505	0.750000
testis_male_adult_54_years	chr19	37347092	37347132	37347092	+	High_confidence	3	3	9	0.334188	3.169925	chr19	37346929	37347116	SINE|Alu|AluSp	-	chr19	37346296	37364447	HKR1|ENST00000541583.6	+	37346296,37347189,37347776,37362108	37346492,37347316,37347872,37364447	0.555556
testis_male_adult_54_years	chr7	107549212	107549224	107549223	-	High_confidence	7	7	14	0.519848	3.546594	chr7	107549198	107549398	LINE|L2|L2a	+	chr7	107372594	107549259	COG5|ENST00000475638.6	-	107372594,107412501,107527236,107548110,107548277,107549210	107372760,107412632,107527357,107548180,107548332,107549259	0.928571
testis_male_adult_54_years	chr2	14904514	14904523	14904522	-	High_confidence	6	6	12	0.445584	3.251629	chr2	14904131	14904501	LTR|ERVL|MLT2B3	-	chr2	14904005	14904584	STRG.30993.1	-	14904005	14904584	0.916667
testis_male_adult_54_years	chr12	10009078	10009098	10009086	+	RAMPAGE_only	7	7	21	0.779772	4.121928	chr12	10008893	10009342	LTR|ERV1|LTR12F	+	chr12	10010626	10018800	CLEC12B|NM_001129998.2	+	10010626,10012784,10014522,10015251,10015611,10018330	10010850,10012883,10014741,10015406,10015727,10018800	0.666667
testis_male_adult_54_years	chr22	23605037	23605056	23605037	-	High_confidence	15	15	43	1.596676	4.020717	chr22	23604796	23605020	LINE|CR1|L3	-	chr22	23604346	23605300	STRG.353873.1	-	23604346	23605300	0.813953
testis_male_adult_54_years	chr12	90917980	90918002	90918001	-	High_confidence	24	26	59	2.190789	5.004364	chr12	90917467	90918222	LTR|ERV1|LTR60B	-	chr12	90905624	90917992	STRG.258406.7	-	90905624,90917713	90905864,90917992	0.915254
testis_male_adult_54_years	chr3	127537772	127537806	127537786	-	High_confidence	12	18	71	2.636373	5.889927	chr3	127537493	127537876	LINE|L2|L2a	+	chr3	127514240	127537778	STRG.77021.4	-	127514240,127532384,127532798,127533576,127534116,127535185,127536483	127528709,127532443,127532913,127533769,127534406,127535404,127537778	0.830986
testis_male_adult_54_years	chr17	47397587	47397604	47397597	+	RAMPAGE_only	4	4	13	0.482716	3.084963	chr17	47397008	47398865	Retroposon|SVA|SVA_D	+	chr17	47401502	47421837	STRG.318652.4	+	47401502,47403877,47404561,47409646,47412772,47414847,47415911	47402203,47404021,47404633,47409691,47412916,47414919,47421837	0.538462
testis_male_adult_54_years	chr5	38393842	38393843	38393842	+	RAMPAGE_only	6	8	9	0.334188	3.000000	chr5	38393580	38394320	LTR|ERV1|LTR1C	-	chr5	38403531	38465480	EGFLAM|NM_182798.2	+	38403531,38406125,38406827,38407804,38409003,38412503,38418065,38424966,38427008,38431176,38435136,38438274,38448300,38451314,38458310,38462907,38463831	38403891,38406241,38407146,38407905,38409104,38412648,38418255,38425092,38427252,38431288,38435253,38438455,38448379,38451458,38458394,38463011,38465480	0.888889
testis_male_adult_54_years	chr8	11633097	11633106	11633105	+	RAMPAGE_only	3	3	8	0.297056	2.750000	chr8	11633082	11633131	SINE|MIR|MIRb	+	chr8	11642797	11649342	STRG.179781.1	+	11642797,11647336	11643519,11649342	1.000000
testis_male_adult_54_years	chr18	48662919	48662935	48662919	+	RAMPAGE_only	30	40	104	3.861729	5.852014	chr18	48662701	48663071	LINE|L1|L1ME3A	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	0.586538
testis_male_adult_54_years	chr4	188795745	188795751	188795750	-	High_confidence	17	17	33	1.225356	4.812500	chr4	188795662	188795832	LINE|L2|L2c	+	chr4	188777678	188796633	STRG.110750.3	-	188777678,188791071,188794859	188778051,188791291,188796633	0.969697
testis_male_adult_54_years	chr2	177234011	177234058	177234011	-	RAMPAGE_only	2	2	27	1.002564	4.163856	chr2	177233751	177233962	SINE|MIR|MIRc	-	chr2	177231713	177263567	NFE2L2|ENST00000448782.5	-	177231713,177232391,177233249,177234004,177263436	177232008,177232583,177233339,177234271,177263567	0.777778
testis_male_adult_54_years	chr10	28282098	28282125	28282098	-	High_confidence	16	16	47	1.745205	5.095795	chr10	28281945	28282364	LTR|ERVL|LTR86A1	+	chr10	28050992	28282097	MPP7|NM_173496.4	-	28050992,28056479,28058494,28059649,28069771,28089670,28119650,28120193,28120593,28124030,28125009,28131559,28147482,28149981,28202152,28238567,28254773,28280099,28282009	28054244,28056623,28058603,28059743,28069852,28089841,28119715,28120390,28120668,28124116,28125091,28131691,28147563,28150059,28202271,28238735,28254876,28280140,28282097	0.531915
testis_male_adult_54_years	chr5	105392093	105392125	105392103	-	High_confidence	7	7	16	0.594112	3.456565	chr5	105391971	105393225	LTR|ERV1|LTR2752	-	chr5	105391194	105392963	STRG.124128.2	-	105391194	105392963	0.875000
testis_male_adult_54_years	chr3	149912070	149912081	149912070	+	High_confidence	5	5	10	0.371320	3.121928	chr3	149912115	149912721	LINE|L1|L1ME2z	+	chr3	149911992	149961374	RNF13|ENST00000468289.1	+	149911992,149921133,149960739	149912083,149921227,149961374	0.500000
testis_male_adult_54_years	chr7	92142954	92142955	92142954	-	High_confidence	317	317	345	12.810544	6.039713	chr7	92142542	92143888	LTR|ERV1|LTR12C	-	chr7	92137666	92142952	STRG.168680.14	-	92137666,92142462	92140088,92142952	0.968116
testis_male_adult_54_years	chr10	93788555	93788610	93788590	-	High_confidence	10	10	28	1.039696	4.680813	chr10	93788435	93788607	SINE|MIR|MIRb	-	chr10	93772680	93788605	AL358154.1|ENST00000627075.1	-	93772680,93775957,93776952,93788531	93772907,93776027,93777025,93788605	0.500000
testis_male_adult_54_years	chr14	90536258	90536330	90536324	-	RAMPAGE_only	23	24	107	3.973125	5.792286	chr14	90536076	90536752	LINE|L2|L2a	+	chr14	90524563	90816417	TTC7B|ENST00000328459.10	-	90524563,90578105,90593485,90610741,90617928,90644047,90646950,90652840,90654992,90657173,90658303,90676522,90680471,90689539,90695499,90730074,90744791,90780737,90786173,90816174	90541589,90578308,90593626,90610839,90618045,90644208,90647023,90652898,90655110,90657278,90658387,90676660,90680535,90689712,90695578,90730196,90744922,90780906,90786328,90816417	0.990654
testis_male_adult_54_years	chr20	45833280	45833321	45833293	-	High_confidence	30	32	53	1.967997	4.311231	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833439	STRG.345624.2	-	45823213,45823990,45824291,45824494,45824782,45833250	45823379,45824127,45824406,45824638,45824834,45833439	0.981132
testis_male_adult_54_years	chr3	15049776	15049802	15049776	-	RAMPAGE_only	2	2	6	0.222792	2.584963	chr3	15049773	15049897	SINE|Alu|AluJb	-	chr3	15049211	15065260	MRPS25|ENST00000449354.6	-	15049211,15053379,15059368,15065060	15049935,15053467,15059475,15065260	0.666667
testis_male_adult_54_years	chr3	139436695	139436725	139436724	+	High_confidence	20	23	77	2.859165	5.779647	chr3	139436526	139436960	LTR|ERVL-MaLR|MLT1C	+	chr3	139435868	139447913	STRG.78989.6	+	139435868,139444293	139436884,139447913	0.558442
testis_male_adult_54_years	chr14	31690921	31690934	31690921	-	High_confidence	2	2	8	0.297056	2.750000	chr14	31690046	31691506	DNA|TcMar-Tigger|Tigger2	+	chr14	31689789	31690861	STRG.279349.1	-	31689789,31690782	31690087,31690861	0.625000
testis_male_adult_54_years	chr11	73897200	73897210	73897209	+	RAMPAGE_only	3	3	8	0.297056	2.750000	chr11	73896297	73898232	Retroposon|SVA|SVA_D	-	chr11	73900367	73916645	PAAF1|ENST00000540659.1	+	73900367,73909398,73916544	73900420,73909593,73916645	0.750000
testis_male_adult_54_years	chr16	61128870	61128881	61128870	+	High_confidence	6	6	13	0.482716	3.418296	chr16	61127777	61129337	LTR|ERV1|LTR12C	-	chr16	61128878	61365800	STRG.307470.1	+	61128878,61193622,61365497	61129393,61193694,61365800	0.769231
testis_male_adult_54_years	chr8	92765644	92765696	92765665	+	High_confidence	7	7	61	2.265053	5.427642	chr8	92765116	92769888	LTR|ERVL|HERVL-int	-	chr8	92765699	92858302	STRG.189643.1	+	92765699,92776105,92822129,92858001	92765943,92776211,92822185,92858302	0.688525
testis_male_adult_54_years	chr7	137276413	137276417	137276413	+	High_confidence	4	4	8	0.297056	3.000000	chr7	137276270	137276717	LTR|ERVL|MER70A	+	chr7	137276434	137314764	STRG.174696.1	+	137276434,137303146,137314615	137276632,137303257,137314764	0.500000
testis_male_adult_54_years	chr16	81664292	81664344	81664343	+	RAMPAGE_only	5	7	24	0.891168	3.886842	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81651199	81711603	STRG.310621.4	+	81651199,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81651427,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81711603	0.958333
testis_male_adult_54_years	chr4	118265480	118265562	118265561	-	High_confidence	11	11	58	2.153657	4.837643	chr4	118265367	118266730	LTR|ERV1|LTR12C	+	chr4	118263690	118265540	STRG.101221.3	-	118263690	118265540	0.500000
testis_male_adult_54_years	chr4	79493274	79493298	79493274	+	High_confidence	2	2	7	0.259924	2.584963	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.571429
testis_male_adult_54_years	chr16	72172422	72172474	72172422	-	High_confidence	47	47	224	8.317570	6.067601	chr16	72172283	72172590	LTR|ERVL-MaLR|MLT1I	-	chr16	72119096	72172450	PMFBP1|NM_001160213.1	-	72119096,72119850,72122913,72123545,72124766,72125237,72125967,72128656,72129065,72130212,72130532,72132747,72136447,72136692,72139288,72140411,72150607,72154210,72164370,72164763,72171196,72172276	72119354,72120149,72122988,72123649,72124934,72125405,72126132,72128794,72129233,72130357,72130722,72132991,72136605,72136819,72139399,72140582,72150829,72154459,72164486,72164916,72171268,72172450	0.892857
testis_male_adult_54_years	chr16	15711281	15711282	15711281	-	High_confidence	267	299	361	13.404656	6.227400	chr16	15711228	15711503	DNA|hAT-Charlie|MER113	+	chr16	15703740	15711270	MYH11|ENST00000573908.1	-	15703740,15711112	15704123,15711270	0.908587
testis_male_adult_54_years	chr9	89969409	89969416	89969415	+	RAMPAGE_only	31	31	52	1.930865	5.315824	chr9	89969327	89969615	LINE|L1|L1MB7	+	chr9	89978281	90005141	STRG.206093.2	+	89978281,89987180,90000640,90004948	89978432,89987448,90001218,90005141	0.615385
testis_male_adult_54_years	chr5	70401422	70401505	70401504	+	High_confidence	110	180	843	31.302285	6.145079	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70401446	70447526	STRG.119602.6	+	70401446,70420248,70421279,70421736,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415550,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.992883
testis_male_adult_54_years	chr4	48255302	48255365	48255302	-	RAMPAGE_only	18	18	85	3.156221	4.711815	chr4	48255094	48255505	LTR|ERVL-MaLR|MLT1K	-	chr4	48135782	48269797	TEC|NM_003215.2	-	48135782,48138664,48138903,48141354,48145078,48145407,48146324,48149556,48150862,48156679,48163701,48167777,48168585,48170247,48171367,48176081,48228476,48269751	48137499,48138822,48139022,48141419,48145295,48145579,48146399,48149690,48150942,48156734,48163767,48167953,48168626,48170376,48171449,48176186,48228659,48269797	0.894118
testis_male_adult_54_years	chr1	162497330	162497364	162497340	+	High_confidence	5	7	20	0.742640	4.021928	chr1	162496833	162497426	LTR|ERV1|MER4B	-	chr1	162497250	162529629	UHMK1|ENST00000545294.5	+	162497250,162499954,162500912,162503753,162512499,162512724,162518101,162522403	162497296,162500247,162501104,162503848,162512576,162512823,162518190,162529629	0.850000
testis_male_adult_54_years	chr4	151910168	151910186	151910169	-	High_confidence	205	288	532	19.754230	5.140088	chr4	151910065	151910596	DNA|hAT-Tip100|MER45B	+	chr4	151904936	151910184	STRG.106154.2	-	151904936,151906031,151909997	151905313,151906121,151910184	0.947368
testis_male_adult_54_years	chr2	232845824	232845839	232845831	+	RAMPAGE_only	3	4	10	0.371320	2.725481	chr2	232845876	232846546	LINE|CR1|L3	+	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.900000
testis_male_adult_54_years	chr8	116251425	116251436	116251435	+	High_confidence	55	56	81	3.007693	5.267086	chr8	116251078	116251883	LTR|ERV1|LTR12D	+	chr8	116251420	116251928	STRG.192794.1	+	116251420	116251928	0.790123
testis_male_adult_54_years	chr19	17075172	17075214	17075213	-	High_confidence	4	4	14	0.519848	3.085055	chr19	17075045	17075226	SINE|MIR|MIRb	-	chr19	17049765	17075200	HAUS8|ENST00000593360.1	-	17049765,17052824,17055860,17058548,17058810,17059556,17059996,17062697,17069030,17073273	17050176,17052966,17056002,17058707,17058876,17059651,17060092,17062779,17069086,17075200	0.785714
testis_male_adult_54_years	chr9	70175863	70175881	70175871	-	RAMPAGE_only	49	54	128	4.752897	6.226527	chr9	70175682	70176053	LTR|ERVL-MaLR|MLT1B	-	chr9	70164970	70179583	STRG.203279.3	-	70164970	70179583	0.843750
testis_male_adult_54_years	chr13	49240369	49240399	49240369	+	RAMPAGE_only	3	4	10	0.371320	2.846439	chr13	49240320	49240532	SINE|MIR|MIR	+	chr13	49247910	49293486	CDADC1|NM_030911.3	+	49247910,49248870,49255838,49259345,49267489,49274290,49278349,49280508,49286221,49291683	49248119,49248965,49255913,49259523,49268059,49274340,49278519,49280698,49286282,49293486	0.800000
testis_male_adult_54_years	chr4	170092164	170092165	170092164	+	High_confidence	160	160	205	7.612062	4.848378	chr4	170091048	170092581	LTR|ERV1|LTR12C	+	chr4	170092025	170100104	STRG.107918.1	+	170092025,170099817	170092545,170100104	0.814634
testis_male_adult_54_years	chr11	12129406	12129417	12129416	+	RAMPAGE_only	5	5	9	0.334188	2.947703	chr11	12129280	12129438	SINE|MIR|MIRc	-	chr11	12121474	12162419	MICAL2|ENST00000532420.1	+	12121474,12162078	12121649,12162419	0.888889
testis_male_adult_54_years	chr7	818320	818335	818325	-	High_confidence	7	7	25	0.928300	4.436605	chr7	818112	818870	LINE|L1|L1MB5	-	chr7	817900	818314	STRG.157119.1	-	817900	818314	0.600000
testis_male_adult_54_years	chr11	72758533	72758553	72758552	-	RAMPAGE_only	12	15	27	1.002564	4.053661	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72793657	STARD10|ENST00000543304.5	-	72754728,72755700,72757766,72758529,72759233,72780974,72792874,72793409	72755142,72755753,72757884,72758633,72759381,72781294,72792982,72793657	0.925926
testis_male_adult_54_years	chr5	9183258	9183271	9183270	+	High_confidence	33	34	88	3.267617	5.592606	chr5	9183052	9183613	LTR|ERVL|LTR16D	-	chr5	9183007	9184391	STRG.112413.1	+	9183007	9184391	0.886364
testis_male_adult_54_years	chr7	64990685	64990706	64990705	-	High_confidence	7	8	15	0.556980	3.773557	chr7	64990323	64990915	LTR|ERV1|LTR4	-	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	1.000000
testis_male_adult_54_years	chr8	89623371	89623402	89623371	-	High_confidence	2	2	9	0.334188	3.000000	chr8	89623003	89623413	LTR|ERVL-MaLR|MSTA	-	chr8	89611362	89623424	STRG.188745.1	-	89611362,89615182,89617078,89623084	89611989,89615305,89617156,89623424	0.666667
testis_male_adult_54_years	chr2	31558566	31558580	31558567	-	RAMPAGE_only	5	7	14	0.519848	3.700440	chr2	31558296	31558657	LTR|ERVL-MaLR|MLT1C	-	chr2	31524585	31580971	SRD5A2|NM_000348.3	-	31524585,31529306,31531370,31533602,31580619	31526262,31529457,31531472,31533766,31580971	0.857143
testis_male_adult_54_years	chr13	63840750	63840770	63840750	-	RAMPAGE_only	2	2	7	0.259924	2.807355	chr13	63840704	63841192	LINE|L1|L1MDa	-	chr13	63837294	63843424	OR7E104P|ENST00000641745.1	-	63837294,63838159,63839069,63839748,63841522,63843313	63837442,63838238,63839225,63839824,63841623,63843424	1.000000
testis_male_adult_54_years	chr11	15561760	15561785	15561784	+	High_confidence	2	4	7	0.259924	2.521641	chr11	15560740	15562134	LTR|ERV1|LTR12C	+	chr11	15561796	15567089	STRG.230879.2	+	15561796,15567020	15562228,15567089	0.714286
testis_male_adult_54_years	chr6	11417048	11417089	11417068	+	High_confidence	4	4	19	0.705508	3.892407	chr6	11416082	11417550	LTR|ERV1|LTR12C	-	chr6	11416834	11517388	STRG.136102.1	+	11416834,11487564,11489068,11490312,11503510,11516155	11417579,11487711,11489175,11490464,11503663,11517388	0.842105
testis_male_adult_54_years	chr14	77459233	77459254	77459233	+	High_confidence	3	3	14	0.519848	3.546594	chr14	77459183	77459290	SINE|tRNA-RTE|MamSINE1	+	chr14	77459668	77464690	AHSA1|ENST00000556866.5	+	77459668,77462159,77462641,77464597	77459806,77462242,77462759,77464690	0.642857
testis_male_adult_54_years	chr12	112126009	112126025	112126018	+	High_confidence	2	2	7	0.259924	2.584963	chr12	112125997	112126163	SINE|MIR|MIRb	+	chr12	112125562	112142295	TRAFD1|ENST00000552896.1	+	112125562,112126084,112130510,112134737,112135012,112140818,112142088	112125618,112126149,112130569,112134873,112135066,112141224,112142295	0.714286
testis_male_adult_54_years	chr3	83384447	83384492	83384447	+	RAMPAGE_only	12	12	68	2.524977	5.642394	chr3	83384309	83384667	LTR|ERVL-MaLR|THE1C	+	chr3	83437212	83450371	STRG.71531.3	+	83437212,83450287	83437568,83450371	0.588235
testis_male_adult_54_years	chr10	19275612	19275613	19275612	+	RAMPAGE_only	4	4	6	0.222792	2.584963	chr10	19275386	19275720	SINE|Alu|AluY	+	chr10	19204330	19280539	STRG.215128.1	+	19204330,19204897,19209267,19257683,19280046	19204413,19205265,19209680,19257771,19280539	0.500000
testis_male_adult_54_years	chr1	175556870	175556895	175556870	-	High_confidence	5	5	18	0.668376	3.725481	chr1	175556780	175557372	LTR|ERVL-MaLR|MLT1F2	+	chr1	175538774	175556818	TNR-IT1|ENST00000455447.1	-	175538774,175556590	175539176,175556818	0.944444
testis_male_adult_54_years	chr12	79711835	79711836	79711835	+	RAMPAGE_only	93	93	126	4.678633	4.784913	chr12	79710733	79712252	LTR|ERV1|LTR12C	+	chr12	79710537	79713738	STRG.256997.2	+	79710537	79713738	0.960317
testis_male_adult_54_years	chr5	161631703	161631730	161631703	+	High_confidence	5	5	17	0.631244	3.852169	chr5	161631683	161631863	SINE|Alu|AluJb	-	chr5	161631728	161640932	STRG.131330.2	+	161631728,161636783,161640293	161631833,161636896,161640932	0.705882
testis_male_adult_54_years	chr21	13877735	13877752	13877747	-	RAMPAGE_only	7	8	35	1.299620	4.210765	chr21	13877651	13878201	LTR|ERV1|LTR6A	+	chr21	13852828	13881119	STRG.348306.5	-	13852828,13874600	13855254,13881119	0.828571
testis_male_adult_54_years	chr5	8840353	8840486	8840485	-	High_confidence	12	12	95	3.527541	5.273254	chr5	8840276	8841624	LTR|ERV1|LTR12D	+	chr5	8820172	8840839	STRG.112401.2	-	8820172,8835365,8839553	8820923,8835423,8840839	0.957895
testis_male_adult_54_years	chr6	36914639	36914687	36914686	+	RAMPAGE_only	10	10	27	1.002564	4.532665	chr6	36914707	36914996	SINE|Alu|AluSz6	+	chr6	36885863	36928964	C6orf89|NM_152734.3	+	36885863,36899425,36902220,36914283,36914553,36916444,36919577,36923346	36886028,36899633,36902434,36914435,36914693,36916574,36919701,36928964	0.925926
testis_male_adult_54_years	chr12	31123189	31123225	31123189	-	High_confidence	40	40	101	3.750333	6.124695	chr12	31123027	31123626	LTR|ERV1|HERVE-int	+	chr12	31111658	31123555	STRG.250843.1	-	31111658,31112980,31114395,31114836,31116356,31117419,31118896,31121138,31123092	31111809,31113083,31114464,31114927,31116469,31117484,31120633,31121283,31123555	0.732673
testis_male_adult_54_years	chr1	37519041	37519042	37519041	+	High_confidence	390	392	400	14.852804	5.589051	chr1	37518068	37519559	LTR|ERV1|LTR12C	+	chr1	37519060	37520300	STRG.4498.1	+	37519060	37520300	0.967500
testis_male_adult_54_years	chr16	2307853	2307854	2307853	-	RAMPAGE_only	10	10	11	0.408452	3.121928	chr16	2307611	2307904	SINE|Alu|AluY	-	chr16	2282420	2328890	STRG.302204.6	-	2282420,2283185,2284278,2284778,2285441,2286693,2288025,2289433,2292139,2295589,2297328,2297765,2298385,2299402,2303968,2308449,2317282,2317647,2319580,2323522,2324403,2326009,2326412,2328452	2283086,2283358,2284437,2284998,2285646,2286967,2289112,2289620,2292238,2295740,2297539,2297921,2298540,2300148,2304150,2308623,2317403,2317764,2319840,2323688,2324531,2326274,2326492,2328890	0.909091
testis_male_adult_54_years	chr19	52661906	52661934	52661906	+	High_confidence	21	21	49	1.819469	4.994035	chr19	52661707	52662067	LINE|L2|L2a	-	chr19	52661913	52664108	STRG.339202.1	+	52661913,52663908	52662445,52664108	0.734694
testis_male_adult_54_years	chr5	3452817	3452837	3452836	+	High_confidence	27	27	65	2.413581	5.659820	chr5	3452788	3452851	SINE|MIR|MIR3	-	chr5	3452837	3462573	STRG.111613.1	+	3452837,3453704,3455330,3461316	3452962,3453787,3455549,3462573	0.815385
testis_male_adult_54_years	chr9	84409296	84409297	84409296	+	High_confidence	19	19	23	0.854036	3.844233	chr9	84408306	84409815	LTR|ERV1|LTR12C	+	chr9	84409510	84466514	STRG.205403.2	+	84409510,84412081,84464628	84409840,84412198,84466514	0.869565
testis_male_adult_54_years	chr1	166850177	166850275	166850234	+	RAMPAGE_only	3	3	31	1.151092	3.978334	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166848924	166856344	STRG.18615.3	+	166848924,166849787,166852584	166849733,166850423,166856344	0.903226
testis_male_adult_54_years	chr9	33260184	33260192	33260191	-	High_confidence	3	3	8	0.297056	2.521641	chr9	33260000	33260159	SINE|Alu|FAM	-	chr9	33255024	33260441	BAG1|ENST00000379701.5	-	33255024,33255864,33256800,33258919	33255308,33255927,33256908,33260441	0.875000
testis_male_adult_54_years	chr20	57351528	57351574	57351573	+	High_confidence	47	49	326	12.105036	4.992150	chr20	57351570	57351651	SINE|MIR|MIR3	-	chr20	57351576	57356512	RAE1|ENST00000452119.1	+	57351576,57354031,57354711,57356445	57351998,57354128,57354816,57356512	0.791411
testis_male_adult_54_years	chr15	62217157	62217176	62217175	-	RAMPAGE_only	6	6	10	0.371320	2.721928	chr15	62217168	62217899	LTR|ERV1|MER4B-int	+	chr15	62194266	62220216	STRG.295622.3	-	62194266	62220216	1.000000
testis_male_adult_54_years	chr17	47067462	47067513	47067498	-	High_confidence	699	855	4425	164.309149	6.219113	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.918870
testis_male_adult_54_years	chr18	58522215	58522216	58522215	-	RAMPAGE_only	4	4	6	0.222792	2.584963	chr18	58522185	58522378	DNA|hAT-Blackjack|MER63A	+	chr18	58481246	58628957	ALPK2|ENST00000361673.3	-	58481246,58498048,58503930,58514992,58516907,58523805,58523934,58529090,58534833,58578813,58607321,58611688,58628763	58482039,58498097,58504148,58515081,58517182,58523841,58524062,58529238,58538224,58580548,58607439,58611817,58628957	0.833333
testis_male_adult_54_years	chr14	91840048	91840058	91840048	+	RAMPAGE_only	3	3	8	0.297056	2.521641	chr14	91839872	91840288	LTR|ERVL-MaLR|MLT1J2	+	chr14	91846281	91846759	STRG.287853.1	+	91846281	91846759	0.750000
testis_male_adult_54_years	chr1	147517571	147517584	147517571	-	High_confidence	2	2	8	0.297056	2.807355	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147513625	147517875	STRG.16179.6	-	147513625,147515520	147514448,147517875	0.875000
testis_male_adult_54_years	chr20	37178862	37178887	37178886	-	High_confidence	2	2	8	0.297056	2.521641	chr20	37178563	37178867	SINE|Alu|AluSx	-	chr20	37159000	37178966	MROH8|ENST00000422138.1	-	37159000,37160096,37168120,37171911,37173994,37178798	37159036,37160176,37168243,37172057,37174116,37178966	0.750000
testis_male_adult_54_years	chr17	63828005	63828035	63828013	+	High_confidence	6	6	23	0.854036	4.349649	chr17	63827986	63828047	SINE|MIR|MIRb	-	chr17	63827877	63831986	PSMC5|ENST00000581882.5	+	63827877,63829493,63829851,63830132,63830270,63830808,63831035,63831326,63831505,63831723,63831915	63828209,63829563,63829949,63830189,63830501,63830935,63831226,63831425,63831616,63831810,63831986	1.000000
testis_male_adult_54_years	chr5	140648247	140648277	140648276	+	High_confidence	3	3	9	0.334188	2.947703	chr5	140648155	140648448	LINE|L2|L2c	+	chr5	140648093	140654727	IK|ENST00000502899.2	+	140648093,140648470,140651713,140652087,140652976,140653937,140654515,140654680	140648162,140648537,140651806,140652147,140653144,140654052,140654586,140654727	0.888889
testis_male_adult_54_years	chr7	30579066	30579067	30579066	-	RAMPAGE_only	7	7	9	0.334188	3.169925	chr7	30578715	30579253	LTR|ERV1|LOR1-int	-	chr7	30548356	30577779	LOC401320|NR_038889.1	-	30548356,30552099,30561465,30563730,30568832,30576563,30577648	30550781,30552179,30562128,30563998,30568989,30576710,30577779	0.555556
testis_male_adult_54_years	chr10	115028146	115028174	115028146	-	High_confidence	6	6	16	0.594112	3.500000	chr10	115027883	115028178	SINE|Alu|AluSx	-	chr10	115026606	115028147	STRG.226390.1	-	115026606,115027852	115026772,115028147	0.937500
testis_male_adult_54_years	chr10	637500	637510	637509	-	RAMPAGE_only	14	14	36	1.336752	4.947703	chr10	637337	637677	LTR|ERVL-MaLR|MLT1A0	-	chr10	623734	674704	STRG.211976.9	-	623734,671509	671401,674704	1.000000
testis_male_adult_54_years	chr2	88178553	88178574	88178573	+	RAMPAGE_only	8	9	21	0.779772	4.201841	chr2	88178556	88178647	LINE|L2|L2c	-	chr2	88174807	88186318	THNSL2|ENST00000496844.5	+	88174807,88175248,88178782,88182698,88182947,88185897	88174833,88175401,88179013,88182847,88183073,88186318	0.904762
testis_male_adult_54_years	chr11	65434799	65434928	65434799	+	RAMPAGE_only	18	18	83	3.081957	5.031198	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65425550	65445540	STRG.235831.6	+	65425550,65437228	65437184,65445540	0.963855
testis_male_adult_54_years	chr9	41105822	41105826	41105825	-	RAMPAGE_only	10	10	25	0.928300	3.863465	chr9	41105160	41106192	LTR|ERVK|LTR5A	+	chr9	41100983	41110222	STRG.202369.8	-	41100983,41102462,41102730,41104406	41101294,41102531,41104361,41110222	1.000000
testis_male_adult_54_years	chr13	33818374	33818380	33818374	+	High_confidence	2	2	6	0.222792	2.584963	chr13	33818361	33818761	LINE|L2|L2a	-	chr13	33818068	33837507	RFC3|NM_002915.3	+	33818068,33821131,33823916,33825788,33829835,33830718,33831255,33835147,33836103	33818265,33821269,33823984,33825886,33830017,33830855,33831354,33835217,33837507	0.500000
testis_male_adult_54_years	chr9	106500854	106500855	106500854	-	High_confidence	56	58	58	2.153657	5.485926	chr9	106500441	106501847	LTR|ERV1|LTR12C	-	chr9	106500339	106500873	STRG.208234.1	-	106500339	106500873	0.827586
testis_male_adult_54_years	chr3	180870096	180870186	180870164	-	High_confidence	8	12	42	1.559544	4.957445	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180707588	180870178	LOC101928882|NR_109986.1	-	180707588,180711192,180711309,180725514,180733478,180734486,180737492,180747879,180748245,180751347,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180733682,180734606,180737814,180748043,180748319,180751410,180782124,180810470,180847624,180870178	0.666667
testis_male_adult_54_years	chr15	51655783	51655792	51655783	-	High_confidence	3	3	7	0.259924	2.807355	chr15	51655272	51656041	LTR|ERV1|LTR17	-	chr15	51636756	51655789	STRG.294617.1	-	51636756,51653407,51655496	51637259,51653568,51655789	1.000000
testis_male_adult_54_years	chr16	4424846	4424893	4424867	-	High_confidence	3	3	11	0.408452	2.846439	chr16	4424649	4424942	LINE|L2|L2a	+	chr16	4416724	4425523	CORO7|ENST00000572140.1	-	4416724,4420358,4425477	4416961,4420553,4425523	0.818182
testis_male_adult_54_years	chr2	181954484	181954526	181954512	+	High_confidence	18	19	81	3.007693	5.047638	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954530	182117685	PPP1R1C|ENST00000490645.5	+	181954530,181962133,181975218,182061441,182063730,182117206	181954634,181962196,181975264,182061479,182063791,182117685	0.851852
testis_male_adult_54_years	chr3	152153378	152153379	152153378	+	High_confidence	108	109	115	4.270181	5.873023	chr3	152152232	152153792	LTR|ERV1|LTR12C	+	chr3	152153391	152154450	STRG.80480.1	+	152153391	152154450	0.643478
testis_male_adult_54_years	chr18	71212611	71212625	71212615	+	High_confidence	13	15	42	1.559544	5.003056	chr18	71211548	71213041	LTR|ERV1|LTR12C	-	chr18	71212617	71395376	STRG.329818.1	+	71212617,71395118	71213089,71395376	0.571429
testis_male_adult_54_years	chr17	20017144	20017145	20017144	+	High_confidence	351	356	394	14.630012	6.032980	chr17	20016290	20017558	LTR|ERV1|LTR12C	+	chr17	20017144	20096715	SPECC1|ENST00000582604.1	+	20017144,20017986,20096630	20017605,20018102,20096715	0.977157
testis_male_adult_54_years	chr2	18682260	18682292	18682260	+	High_confidence	3	3	9	0.334188	3.000000	chr2	18681232	18682755	LINE|L2|L2a	-	chr2	18682253	18682568	STRG.31522.1	+	18682253	18682568	0.555556
testis_male_adult_54_years	chr20	10180161	10180162	10180161	+	High_confidence	7	10	10	0.371320	2.921928	chr20	10180012	10180190	LTR|ERVL-MaLR|MLT1H	-	chr20	10180234	10185775	AL354824.2|ENST00000458004.1	+	10180234,10181637,10185568	10180341,10181769,10185775	1.000000
testis_male_adult_54_years	chr2	216886038	216886039	216886038	+	High_confidence	262	263	300	11.139603	5.854001	chr2	216885075	216886417	LTR|ERV1|LTR12C	+	chr2	216886036	217045973	STRG.57678.6	+	216886036,216993957,217037212	216887001,216994018,217045973	0.970000
testis_male_adult_54_years	chr7	115790062	115790092	115790091	+	High_confidence	5	6	23	0.854036	4.152391	chr7	115789220	115790263	LTR|ERV1|LTR12D	-	chr7	115789728	115791049	AC093714.2|ENST00000489626.1	+	115789728,115790428,115791017	115790266,115790621,115791049	0.521739
testis_male_adult_54_years	chr9	114379276	114379349	114379342	-	RAMPAGE_only	19	21	75	2.784901	5.718623	chr9	114379137	114379388	SINE|MIR|MIRb	+	chr9	114336164	114377635	AKNA|ENST00000374075.9	-	114336164,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377635	0.626667
testis_male_adult_54_years	chr9	107433360	107433376	107433375	-	RAMPAGE_only	4	4	12	0.445584	3.277613	chr9	107433166	107433483	DNA|TcMar-Tigger|Tigger3a	+	chr9	107420283	107430802	LINC01509|ENST00000423523.1	-	107420283,107427280,107428291,107430714	107420420,107427335,107428419,107430802	0.833333
testis_male_adult_54_years	chr10	29142628	29142661	29142650	+	High_confidence	17	26	98	3.638937	5.642244	chr10	29142530	29143374	LTR|ERV1|LTR1A2	+	chr10	29142631	29143156	STRG.216154.1	+	29142631	29143156	0.938776
testis_male_adult_54_years	chr8	93698580	93698581	93698580	+	High_confidence	12	12	14	0.519848	3.664498	chr8	93698481	93698872	LTR|ERVL-MaLR|MLT1H2	+	chr8	93698588	93704984	STRG.189893.11	+	93698588,93699998,93701223,93703619,93704908	93698747,93700288,93701458,93703688,93704984	0.714286
testis_male_adult_54_years	chr4	40818958	40818973	40818965	-	RAMPAGE_only	10	10	31	1.151092	4.418157	chr4	40818889	40818996	SINE|Alu|FLAM_A	-	chr4	40815972	40822466	APBB2|ENST00000502687.1	-	40815972,40821870	40816259,40822466	0.709677
testis_male_adult_54_years	chr10	126520859	126520860	126520859	-	High_confidence	7	7	9	0.334188	2.947703	chr10	126520617	126521060	LTR|ERVL-MaLR|MLT1C	-	chr10	126425767	126520859	C10orf90|ENST00000356858.7	-	126425767,126429786,126459039,126461400,126464695,126503956,126513847,126520126	126426090,126429850,126459217,126461585,126464986,126505085,126513939,126520859	1.000000
testis_male_adult_54_years	chr1	95117881	95117892	95117881	+	High_confidence	4	4	9	0.334188	3.169925	chr1	95117576	95117935	LINE|L1|L1M4b	+	chr1	95117337	95139336	STRG.13025.10	+	95117337,95138274	95118091,95139336	0.555556
testis_male_adult_54_years	chr17	62902976	62903029	62903028	-	RAMPAGE_only	25	31	47	1.745205	5.215002	chr17	62902903	62903165	LINE|L2|L2c	+	chr17	62900111	62900591	STRG.320871.1	-	62900111	62900591	0.553191
testis_male_adult_54_years	chr4	62363397	62363427	62363406	-	High_confidence	3	3	14	0.519848	3.546594	chr4	62363096	62363723	LINE|L2|L2a	+	chr4	62361817	62363419	STRG.95144.1	-	62361817,62363358	62362521,62363419	0.642857
testis_male_adult_54_years	chr12	26011718	26011729	26011718	+	High_confidence	55	55	132	4.901425	6.458643	chr12	26011520	26011898	LTR|ERVL-MaLR|MLT1A0	+	chr12	26011735	26065053	RASSF8|ENST00000542004.5	+	26011735,26055235,26064497	26011821,26055446,26065053	0.795455
testis_male_adult_54_years	chr7	32676254	32676256	32676255	-	RAMPAGE_only	5	7	9	0.334188	3.169925	chr7	32676210	32676764	LTR|ERVL-MaLR|MLT1G	+	chr7	32580938	32719168	DPY19L1P1|NR_036680.1	-	32580938,32581571,32585976,32590878,32593183,32620403,32621012,32623360,32632542,32635251,32639273,32655986,32675931,32676787,32678992,32716717,32719135	32581313,32581664,32586136,32591004,32593306,32620484,32621072,32623439,32632620,32635351,32639365,32656044,32676025,32676908,32679130,32716809,32719168	0.666667
testis_male_adult_54_years	chr5	139364698	139364717	139364698	+	RAMPAGE_only	3	3	11	0.408452	3.321928	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369698	STRG.128592.5	+	139342450,139363758,139364563,139368732	139342666,139363922,139364743,139369698	0.909091
testis_male_adult_54_years	chr12	71667812	71667856	71667820	+	High_confidence	5	5	23	0.854036	4.061482	chr12	71667688	71668064	DNA|hAT-Blackjack|MER63B	-	chr12	71667782	71676941	THAP2|ENST00000551238.1	+	71667782,71674202,71676688	71667910,71674398,71676941	0.782609
testis_male_adult_54_years	chrX	99372404	99372435	99372404	+	High_confidence	6	7	19	0.705508	3.836592	chrX	99371233	99372578	LTR|ERV1|LTR12C	-	chrX	99372184	99372990	STRG.366186.1	+	99372184	99372990	0.842105
testis_male_adult_54_years	chr10	93700187	93700201	93700187	-	RAMPAGE_only	2	2	6	0.222792	2.584963	chr10	93700170	93700378	DNA|TcMar-Tigger|Tigger10	-	chr10	93667882	93702572	FRA10AC1|ENST00000359204.4	-	93667882,93670769,93676652,93681479,93684055,93685245,93687403,93692008,93692645,93694860,93698135,93698300,93700029,93702374	93669868,93670848,93676691,93681598,93684098,93685359,93687449,93692093,93692729,93694937,93698181,93698396,93700106,93702572	1.000000
testis_male_adult_54_years	chr5	176313118	176313149	176313148	+	High_confidence	14	14	41	1.522412	4.997677	chr5	176313070	176313269	LTR|ERVL-MaLR|MLT1L	-	chr5	176313144	176345991	SIMC1|NM_001308200.1	+	176313144,176313690,176322272,176324628,176336719,176337061,176345182	176313484,176313845,176322425,176324757,176336876,176337146,176345991	0.853659
testis_male_adult_54_years	chr2	190923	190924	190923	-	High_confidence	25	25	28	1.039696	4.546594	chr2	190509	191898	LTR|ERV1|LTR12C	-	chr2	175155	190899	STRG.29107.2	-	175155,190508	175768,190899	0.785714
testis_male_adult_54_years	chr5	106246934	106246963	106246962	+	High_confidence	16	20	76	2.822033	4.887441	chr5	106246078	106247392	LTR|ERV1|LTR12C	+	chr5	106246948	106250452	STRG.123352.2	+	106246948,106250408	106247620,106250452	0.894737
testis_male_adult_54_years	chr8	124464722	124464728	124464722	+	High_confidence	6	7	15	0.556980	3.906891	chr8	124464530	124465020	LTR|ERVL|ERVL-E-int	+	chr8	124464760	124465868	STRG.193901.1	+	124464760	124465868	1.000000
testis_male_adult_54_years	chr5	19287720	19287754	19287753	-	High_confidence	3	3	7	0.259924	2.807355	chr5	19287561	19288987	LTR|ERV1|LTR12C	+	chr5	19286709	19288287	STRG.113852.1	-	19286709	19288287	0.571429
testis_male_adult_54_years	chr18	71237109	71237138	71237127	-	High_confidence	4	4	12	0.445584	2.913977	chr18	71237026	71237386	LTR|ERVL-MaLR|THE1C	+	chr18	71216703	71237102	AC091691.2|ENST00000581940.1	-	71216703,71223056,71224130,71237021	71216901,71223157,71224317,71237102	0.583333
testis_male_adult_54_years	chr11	65744502	65744518	65744502	-	High_confidence	2	2	6	0.222792	2.584963	chr11	65743854	65745474	LTR|ERV1|MER52A	+	chr11	65727405	65745218	STRG.235905.1	-	65727405,65727599,65743843	65727473,65727855,65745218	0.500000
testis_male_adult_54_years	chr13	89884173	89884210	89884209	+	High_confidence	4	4	17	0.631244	4.087463	chr13	89882945	89884388	LTR|ERV1|LTR12C	-	chr13	89883756	89885050	STRG.273771.1	+	89883756	89885050	0.647059
testis_male_adult_54_years	chr7	88802063	88802064	88802063	+	High_confidence	14	15	17	0.631244	4.087463	chr7	88801921	88802281	LTR|ERVL-MaLR|THE1D	+	chr7	88802113	88802655	STRG.167459.1	+	88802113	88802655	0.588235
testis_male_adult_54_years	chr15	20300382	20300383	20300382	+	High_confidence	5	5	7	0.259924	2.807355	chr15	20299168	20300391	LINE|L1|L1M1	-	chr15	20300382	20325151	STRG.289838.1	+	20300382,20301412,20324744	20300550,20301540,20325151	0.714286
testis_male_adult_54_years	chr20	2643852	2643862	2643852	-	RAMPAGE_only	19	20	43	1.596676	4.415661	chr20	2643498	2644051	LTR|ERVL-MaLR|MLT1F1	-	chr20	2641654	2652452	STRG.340788.1	-	2641654,2652359	2644381,2652452	0.906977
testis_male_adult_54_years	chr5	150640038	150640051	150640050	+	High_confidence	9	9	20	0.742640	4.121928	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	1.000000
testis_male_adult_54_years	chr17	50737306	50737322	50737306	+	RAMPAGE_only	7	7	19	0.705508	3.576618	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50719598	50743792	LUC7L3|ENST00000504563.6	+	50719598,50736959,50737286,50740305,50741101,50741656,50743705	50719831,50737026,50737479,50740345,50741246,50741731,50743792	0.526316
testis_male_adult_54_years	chr19	40234751	40234752	40234751	-	RAMPAGE_only	7	7	9	0.334188	3.000000	chr19	40234387	40234761	LINE|L2|L2b	+	chr19	40233878	40235958	AKT2|ENST00000497948.5	-	40233878,40234448,40235044,40235262,40235889	40233951,40234571,40235147,40235350,40235958	0.555556
testis_male_adult_54_years	chr1	110473722	110473761	110473760	+	High_confidence	15	15	28	1.039696	4.321296	chr1	110473468	110474039	LTR|ERVL|MER74B	-	chr1	110473775	110474980	AL358215.2|ENST00000634812.2	+	110473775,110473943,110474707	110473794,110474082,110474980	0.678571
testis_male_adult_54_years	chr1	217892886	217892902	217892901	+	High_confidence	13	13	48	1.782337	5.075078	chr1	217892609	217893154	DNA|TcMar-Tigger|Tigger7	-	chr1	217892923	217894359	STRG.25050.1	+	217892923,217893479	217893137,217894359	0.625000
testis_male_adult_54_years	chr12	131164125	131164184	131164148	-	High_confidence	6	7	23	0.854036	3.844882	chr12	131163995	131164323	LTR|ERVL-MaLR|MLT1K	-	chr12	131160312	131164440	STRG.263781.1	-	131160312	131164440	1.000000
testis_male_adult_54_years	chr1	94259540	94259555	94259554	+	RAMPAGE_only	4	4	12	0.445584	3.584963	chr1	94259383	94259805	LTR|ERVL-MaLR|MLT1C	+	chr1	94256670	94269389	STRG.12842.1	+	94256670	94269389	0.916667
testis_male_adult_54_years	chr5	87366319	87366334	87366319	+	RAMPAGE_only	5	5	10	0.371320	2.641604	chr5	87366122	87366726	DNA|hAT-Charlie|Charlie17	+	chr5	87267887	87391931	STRG.121269.3	+	87267887,87331347,87332506,87333266,87337973,87341289,87346671,87349213,87353156,87362550,87363347,87372117,87374162,87374839,87376392,87376880,87378395,87379734,87380508,87383712,87385300,87386825,87389392,87390799	87268990,87331500,87332642,87333337,87338091,87341321,87346724,87349364,87353235,87362671,87369900,87372195,87374320,87374916,87376565,87377040,87378538,87379850,87380595,87383780,87385389,87386903,87389527,87391931	0.900000
testis_male_adult_54_years	chr1	50321123	50321155	50321123	-	High_confidence	57	62	262	9.728587	6.713038	chr1	50320951	50321194	SINE|MIR|MIR	-	chr1	50317212	50321120	AL596275.2|ENST00000641188.1	-	50317212,50318281,50321016	50317658,50318406,50321120	0.648855
testis_male_adult_54_years	chr15	42671456	42671457	42671456	+	RAMPAGE_only	4	4	7	0.259924	2.807355	chr15	42671286	42671790	LTR|ERV1|LTR10D	-	chr15	42575658	42673114	STARD9|ENST00000564158.5	+	42575658,42583345,42585520,42634855,42637906,42638025,42638699,42651015,42652519,42661157,42662793,42665252,42665785,42669157	42575762,42583415,42585637,42634972,42637939,42638087,42638812,42651085,42652592,42661225,42663917,42665330,42665848,42673114	0.571429
testis_male_adult_54_years	chr1	179941872	179941883	179941882	-	High_confidence	11	14	28	1.039696	4.458591	chr1	179941689	179942118	LTR|ERVL-MaLR|MLT1G3	-	chr1	179940848	179942250	STRG.20529.1	-	179940848	179942250	0.535714
testis_male_adult_54_years	chr8	2623402	2623437	2623423	+	High_confidence	7	7	26	0.965432	4.418296	chr8	2623456	2623761	LINE|L1|L1M2	+	chr8	2623364	2624451	STRG.178739.1	+	2623364	2624451	0.807692
testis_male_adult_54_years	chr9	76528433	76528434	76528433	-	High_confidence	41	41	45	1.670940	4.916127	chr9	76527831	76529073	LTR|ERV1|LTR12D	-	chr9	76527362	76528379	STRG.204210.1	-	76527362	76528379	0.933333
testis_male_adult_54_years	chr7	88243787	88243798	88243787	+	High_confidence	11	11	27	1.002564	4.310443	chr7	88243681	88243850	LTR|ERVL|LTR33A	-	chr7	88243776	88292260	AC003991.1|ENST00000627345.2	+	88243776,88253042,88259708,88271762,88276955,88292187	88243832,88253160,88259826,88271870,88277169,88292260	0.703704
testis_male_adult_54_years	chr7	87216904	87216926	87216904	-	High_confidence	3	3	11	0.408452	3.321928	chr7	87216894	87217046	SINE|MIR|MIRb	+	chr7	87196599	87216921	TMEM243|ENST00000481425.5	-	87196599,87197940,87199006,87216739	87196758,87198045,87199057,87216921	0.636364
testis_male_adult_54_years	chr9	112413985	112414012	112414011	+	High_confidence	11	11	19	0.705508	4.142664	chr9	112413709	112414293	LTR|ERV1|LTR10C	-	chr9	112414001	112441770	HSDL2|ENST00000480881.1	+	112414001,112416840,112418859,112438430,112438742,112441698	112414036,112416944,112418958,112438625,112438812,112441770	0.736842
testis_male_adult_54_years	chr19	34675915	34675944	34675943	-	RAMPAGE_only	2	3	8	0.297056	2.807355	chr19	34675656	34676296	LTR|ERV1|LTR12_	-	chr19	34576732	34677031	SCGB1B2P|NR_027620.3	-	34576732,34577265,34577542,34675629	34576994,34577456,34577732,34677031	0.750000
testis_male_adult_54_years	chr3	8682036	8682054	8682053	-	High_confidence	30	34	55	2.042261	5.381360	chr3	8681887	8683470	LTR|ERV1|HERVE-int	+	chr3	8619594	8682071	SSUH2|ENST00000317371.8	-	8619594,8623548,8625541,8626228,8627697,8629663,8630804,8632048,8633665,8635299,8635758,8639947,8658924,8663743,8670997,8671893,8677205,8679704,8681890	8620014,8623656,8625647,8626321,8627783,8629726,8630929,8632109,8633941,8635381,8635857,8640069,8659013,8663802,8671153,8672035,8677353,8679849,8682071	0.745455
testis_male_adult_54_years	chr1	1989397	1989443	1989428	-	High_confidence	5	5	20	0.742640	4.037401	chr1	1989142	1989459	LTR|ERVL|LTR18B	+	chr1	1983670	1989838	STRG.42.8	-	1983670,1986936,1988511,1988888,1989266	1985490,1987035,1988655,1988973,1989838	0.750000
testis_male_adult_54_years	chr8	8781713	8781742	8781721	-	High_confidence	6	6	25	0.928300	4.501629	chr8	8780710	8781954	LTR|ERV1|LTR12C	-	chr8	8722576	8781743	STRG.179477.1	-	8722576,8724910,8757175,8781301	8723734,8725039,8757316,8781743	0.720000
testis_male_adult_54_years	chr3	182001206	182001229	182001228	+	RAMPAGE_only	6	6	10	0.371320	3.169925	chr3	182001165	182001416	LINE|L2|L2b	-	chr3	181984369	182001771	LINC01206|ENST00000625703.1	+	181984369,181984723,182001117	181984431,181984827,182001771	0.500000
testis_male_adult_54_years	chr18	14222863	14222866	14222863	+	RAMPAGE_only	5	5	12	0.445584	3.095795	chr18	14222884	14223150	Retroposon|SVA|SVA_F	+	chr18	14219913	14252140	STRG.324735.4	+	14219913,14221263,14222951,14227610,14232524,14234686,14242139,14243011,14244561,14248218,14248966,14249431,14250287,14251965	14220092,14222912,14226062,14227760,14232637,14234815,14242419,14243223,14244784,14248264,14249023,14249485,14250407,14252140	0.916667
testis_male_adult_54_years	chr3	18693797	18693853	18693832	+	RAMPAGE_only	3	3	16	0.594112	3.640224	chr3	18692573	18694307	LINE|L1|L1PA3	-	chr3	18526498	18902887	SATB1-AS1|ENST00000626982.2	+	18526498,18527173,18745953,18763752,18902503	18526540,18527326,18746070,18763791,18902887	0.500000
testis_male_adult_54_years	chr12	109478067	109478068	109478067	+	High_confidence	4	4	7	0.259924	2.584963	chr12	109478029	109478228	SINE|MIR|MIRb	+	chr12	109477654	109492737	UBE3B|ENST00000537063.1	+	109477654,109481636,109483530,109483860,109486011,109486470,109488571,109489918	109477764,109481742,109483712,109483981,109486071,109486575,109488668,109492737	0.857143
testis_male_adult_54_years	chr11	64242523	64242556	64242546	+	High_confidence	49	51	117	4.344445	5.557034	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.965812
testis_male_adult_54_years	chr7	50256920	50256938	50256920	-	High_confidence	3	3	8	0.297056	2.521641	chr7	50256878	50257002	DNA|hAT-Charlie|MER117	-	chr7	50254688	50256929	STRG.163930.1	-	50254688,50256847	50254938,50256929	0.500000
testis_male_adult_54_years	chr1	27166896	27166938	27166937	-	High_confidence	7	11	26	0.965432	4.546594	chr1	27166187	27167277	LINE|L2|L2a	+	chr1	27098814	27166938	STRG.3431.1	-	27098814,27101202,27101724,27102015,27102384,27102672,27103222,27105884,27107647,27109526,27113790,27121090,27153982,27155353,27166770	27100644,27101275,27101826,27102130,27102558,27102743,27103312,27106087,27107865,27109777,27114286,27121253,27154361,27155404,27166938	0.653846
testis_male_adult_54_years	chr2	139991019	139991082	139991029	+	High_confidence	5	5	51	1.893733	5.094102	chr2	139989826	139991264	LTR|ERV1|LTR12C	-	chr2	139990975	140026211	STRG.47172.1	+	139990975,139992229,140026188	139991362,139992343,140026211	0.627451
testis_male_adult_54_years	chr4	22635403	22635404	22635403	+	High_confidence	39	43	53	1.967997	5.079001	chr4	22634529	22635719	LTR|ERV1|LTR12E	+	chr4	22635417	22636571	STRG.91179.1	+	22635417	22636571	0.905660
testis_male_adult_54_years	chr4	58988156	58988172	58988156	-	High_confidence	75	76	135	5.012821	6.351157	chr4	58987578	58990646	LINE|L1|L1PA13	+	chr4	58987186	58988154	LOC105377245|NR_133940.1	-	58987186,58987815,58988103	58987684,58987889,58988154	0.548148
testis_male_adult_54_years	chr2	184204371	184204385	184204382	+	High_confidence	12	12	39	1.448148	4.939183	chr2	184204273	184204571	SINE|Alu|AluY	-	chr2	184204361	184226805	STRG.52702.1	+	184204361,184226092	184204576,184226805	0.512821
testis_male_adult_54_years	chr22	40862594	40862595	40862594	+	RAMPAGE_only	6	6	8	0.297056	2.807355	chr22	40862504	40862654	LINE|L2|L2c	-	chr22	40857130	40927505	STRG.356967.1	+	40857130,40860677,40861617,40866961,40868998,40870047,40881769,40886312,40907586,40909121,40914238,40922332,40924361,40926268	40857245,40860793,40864356,40867106,40869115,40870139,40882177,40886515,40907649,40909235,40914324,40922513,40924482,40927505	0.875000
testis_male_adult_54_years	chr14	57056050	57056051	57056050	-	High_confidence	288	288	294	10.916811	5.779224	chr14	57055634	57057180	LTR|ERV1|LTR12C	-	chr14	57033763	57056066	STRG.282997.2	-	57033763,57055193	57033850,57056066	0.976190
testis_male_adult_54_years	chr11	17282847	17282908	17282873	+	RAMPAGE_only	4	5	28	1.039696	4.423252	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.928571
testis_male_adult_54_years	chr10	66079077	66079099	66079098	-	High_confidence	35	35	96	3.564673	6.052469	chr10	66079003	66079183	DNA|TcMar-Tigger|Tigger15a	+	chr10	65920110	66079103	CTNNA3|ENST00000373735.1	-	65920110,65966611,65988691,66069307,66078950	65920617,65966746,65988797,66069489,66079103	0.781250
testis_male_adult_54_years	chr6	165885345	165885391	165885388	-	High_confidence	9	9	46	1.708073	5.019061	chr6	165885179	165885534	LTR|ERVL-MaLR|THE1D	-	chr6	165884335	165885370	STRG.156384.1	-	165884335	165885370	0.652174
testis_male_adult_54_years	chr10	28795940	28796007	28796000	-	High_confidence	30	30	221	8.206174	6.078409	chr10	28795966	28796239	LTR|ERVL-MaLR|MLT1J1	-	chr10	28789187	28796006	LINC00837|ENST00000443246.2	-	28789187,28795772	28792944,28796006	0.737557
testis_male_adult_54_years	chr16	20807132	20807158	20807157	+	High_confidence	5	6	11	0.408452	2.846439	chr16	20807198	20807269	SINE|MIR|MIRc	+	chr16	20807156	20825871	REXO5|ENST00000563617.1	+	20807156,20813189,20814926,20816115,20821761,20824438,20825832	20807363,20813302,20815053,20816212,20821902,20824527,20825871	0.818182
testis_male_adult_54_years	chr8	143587067	143587068	143587067	-	High_confidence	12	12	15	0.556980	3.467720	chr8	143587039	143587087	DNA|hAT-Charlie|Charlie1b	+	chr8	143580078	143586817	EEF1D|ENST00000528382.1	-	143580078,143580505,143586742	143580206,143580610,143586817	0.600000
testis_male_adult_54_years	chr8	63028484	63028499	63028484	-	High_confidence	3	3	9	0.334188	2.947703	chr8	63028439	63028564	LINE|L2|L2c	+	chr8	63027193	63028485	GGH|ENST00000523479.1	-	63027193,63028144	63027265,63028485	0.555556
testis_male_adult_54_years	chr6	30196521	30196534	30196533	-	RAMPAGE_only	4	5	10	0.371320	3.169925	chr6	30196338	30196501	SINE|MIR|MIRc	-	chr6	30184454	30190394	TRIM26|ENST00000480999.1	-	30184454,30189166,30189417	30186558,30189199,30190394	0.800000
testis_male_adult_54_years	chr11	21752852	21752891	21752852	-	High_confidence	61	61	99	3.676069	5.207430	chr11	21752440	21753682	LTR|ERV1|LTR12C	-	chr11	21711492	21752894	STRG.231456.1	-	21711492,21734491,21746514,21752514	21713032,21734670,21746641,21752894	0.959596
testis_male_adult_54_years	chr4	61646886	61646916	61646915	+	RAMPAGE_only	3	3	11	0.408452	2.921928	chr4	61641294	61647303	LINE|L1|L1PA3	-	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.636364
testis_male_adult_54_years	chr17	73042	73043	73042	-	RAMPAGE_only	21	21	27	1.002564	4.606739	chr17	72574	72994	DNA|hAT-Charlie|MER1A	-	chr17	71608	76866	STRG.311688.2	-	71608,72656,76722	72563,76501,76866	0.518519
testis_male_adult_54_years	chr19	3062964	3062983	3062982	-	High_confidence	3	3	7	0.259924	2.584963	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.857143
testis_male_adult_54_years	chr3	57350037	57350038	57350037	-	RAMPAGE_only	8	8	8	0.297056	3.000000	chr3	57349987	57350294	LINE|L1|L1PB1	+	chr3	57293748	57357185	DNAH12|ENST00000466540.2	-	57293748,57295524,57296343,57296846,57301734,57309150,57309665,57310716,57322342,57323006,57323468,57334464,57334781,57352084,57357175	57293971,57295592,57296435,57296984,57301939,57309254,57309854,57310950,57322483,57323260,57323619,57334609,57334940,57352225,57357185	0.750000
testis_male_adult_54_years	chr3	163304672	163304719	163304718	-	RAMPAGE_only	14	14	48	1.782337	4.488521	chr3	163303098	163309113	LINE|L1|L1MA1	+	chr3	163199576	163303322	LINC01192|ENST00000492553.5	-	163199576,163199873,163201537,163220100,163249264,163275195,163278509,163303237	163199754,163199951,163201617,163220187,163249374,163275319,163278603,163303322	0.875000
testis_male_adult_54_years	chr1	202448227	202448264	202448263	+	High_confidence	11	11	37	1.373884	4.822001	chr1	202448188	202448294	DNA|DNA|MER126	-	chr1	202448283	202502909	PPP1R12B|ENST00000498070.5	+	202448283,202448988,202488532,202493113,202495292,202495569,202496780,202501858	202448590,202449171,202488623,202493317,202495482,202495682,202496822,202502909	0.891892
testis_male_adult_54_years	chr15	48169893	48169922	48169893	-	High_confidence	14	14	37	1.373884	4.682162	chr15	48169599	48169894	SINE|Alu|AluSg7	-	chr15	48162694	48169910	MYEF2|ENST00000560157.1	-	48162694,48165932,48166120,48168630,48169844	48162893,48166026,48166128,48168839,48169910	0.918919
testis_male_adult_54_years	chr7	1160728	1160743	1160738	-	High_confidence	3	3	9	0.334188	2.750000	chr7	1160609	1160702	LINE|L1|L1MC4	-	chr7	1152906	1160219	ZFAND2A|NM_182491.2	-	1152906,1155452,1157655,1158157,1159963	1153224,1155584,1157750,1158257,1160219	0.777778
testis_male_adult_54_years	chr2	54137844	54137861	54137852	+	RAMPAGE_only	9	9	31	1.151092	4.857981	chr2	54137289	54138174	LINE|L1|L1PREC2	-	chr2	54115705	54305251	ACYP2|ENST00000494922.6	+	54115705,54135452,54138638,54222996,54304687	54115756,54135469,54138748,54223083,54305251	0.548387
testis_male_adult_54_years	chr3	2485940	2485941	2485940	+	RAMPAGE_only	11	11	11	0.408452	3.459432	chr3	2484731	2486359	LTR|ERV1|LTR12C	+	chr3	2484781	2486714	STRG.61360.1	+	2484781	2486714	0.909091
testis_male_adult_54_years	chr12	30400699	30400734	30400699	+	High_confidence	2	2	10	0.371320	3.121928	chr12	30400699	30402420	LTR|ERV1|LOR1-int	+	chr12	30400599	30502329	STRG.250660.1	+	30400599,30484181,30486156,30501825	30400758,30484260,30486459,30502329	0.700000
testis_male_adult_54_years	chr4	4923353	4923373	4923372	-	High_confidence	109	114	239	8.874551	6.076890	chr4	4923222	4923421	SINE|MIR|MIRc	+	chr4	4922168	4923365	STRG.88286.1	-	4922168,4922678	4922465,4923365	0.983264
testis_male_adult_54_years	chr5	151652270	151652286	151652285	+	High_confidence	10	10	28	1.039696	4.088221	chr5	151652260	151652365	DNA|hAT-Charlie|MER20B	+	chr5	151652274	151655449	AC011374.1|ENST00000564471.1	+	151652274,151654033	151652425,151655449	0.928571
testis_male_adult_54_years	chr9	33540128	33540191	33540190	+	RAMPAGE_only	4	4	22	0.816904	4.106603	chr9	33540052	33540347	SINE|Alu|AluSc	-	chr9	33536886	33577014	STRG.201113.2	+	33536886,33539448,33540077,33541146,33543184,33547937,33550429,33555707,33558057,33566218,33567102,33568670,33571245,33572315,33573198,33574839,33575168	33536945,33539502,33540212,33541227,33543255,33548855,33550579,33555820,33558187,33566500,33567314,33568893,33571291,33572369,33573287,33575015,33577014	0.954545
testis_male_adult_54_years	chr15	33194708	33194768	33194708	-	High_confidence	72	75	387	14.370088	6.309079	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.850129
testis_male_adult_54_years	chr5	777980	777999	777998	+	High_confidence	4	4	9	0.334188	3.000000	chr5	777028	778057	LTR|ERV1|LTR12D	-	chr5	777511	781348	STRG.111246.1	+	777511	781348	0.777778
testis_male_adult_54_years	chr4	148942409	148942425	148942409	-	High_confidence	6	6	14	0.519848	3.378783	chr4	148942388	148942545	DNA|hAT-Charlie|MER5A1	-	chr4	148940940	148942378	AC002460.1|ENST00000504394.1	-	148940940,148941656,148942341	148941087,148941842,148942378	0.642857
testis_male_adult_54_years	chr5	132927577	132927595	132927594	-	High_confidence	46	47	82	3.044825	4.980429	chr5	132927548	132927776	SINE|MIR|MIR	-	chr5	132898282	132927562	AFF4|ENST00000477369.5	-	132898282,132899103,132899586,132902441,132904367,132927120	132898392,132899141,132899641,132902487,132904404,132927562	0.780488
testis_male_adult_54_years	chr2	17193956	17194009	17193974	-	High_confidence	5	5	13	0.482716	3.700440	chr2	17193371	17194755	LTR|ERV1|LTR12C	+	chr2	17134467	17193980	STRG.31325.1	-	17134467,17193363	17134581,17193980	0.692308
testis_male_adult_54_years	chr8	11643395	11643404	11643403	+	High_confidence	14	15	23	0.854036	4.201841	chr8	11643373	11643664	LINE|L1|L1MC4a	+	chr8	11642797	11649342	STRG.179781.1	+	11642797,11647336	11643519,11649342	0.869565
testis_male_adult_54_years	chr1	43120089	43120090	43120089	+	High_confidence	4	5	7	0.259924	2.521641	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43120097	43120674	STRG.5089.1	+	43120097	43120674	0.857143
testis_male_adult_54_years	chr20	10318705	10318756	10318755	-	High_confidence	10	12	43	1.596676	4.943593	chr20	10318636	10318893	LTR|ERVL-MaLR|MLT1M	-	chr20	10315547	10318867	STRG.341743.1	-	10315547,10318228	10315605,10318867	0.604651
testis_male_adult_54_years	chr14	49550290	49550291	49550290	-	High_confidence	16	16	16	0.594112	2.852217	chr14	49549505	49550337	LTR|ERVL|MER21B	-	chr14	49549933	49550249	STRG.281997.1	-	49549933	49550249	0.625000
testis_male_adult_54_years	chr13	102861031	102861047	102861031	+	High_confidence	8	8	22	0.816904	4.121928	chr13	102860986	102861288	SINE|Alu|AluSq10	-	chr13	102860681	102875983	STRG.275460.7	+	102860681,102861506,102862029,102865666,102866261,102866631,102868112,102872197,102873258,102875306	102861131,102861714,102863103,102865911,102866381,102866845,102868257,102872398,102873343,102875983	0.909091
testis_male_adult_54_years	chr17	37052722	37052752	37052746	+	RAMPAGE_only	11	13	48	1.782337	4.016774	chr17	37052563	37052833	DNA|hAT-Charlie|Charlie2a	+	chr17	37051134	37056869	AATF|ENST00000622432.1	+	37051134,37056600	37051241,37056869	1.000000
testis_male_adult_54_years	chr8	111758324	111758325	111758324	-	High_confidence	56	58	72	2.673505	5.531799	chr8	111757908	111759311	LTR|ERV1|LTR12C	-	chr8	111757722	111758368	STRG.192508.1	-	111757722	111758368	0.902778
testis_male_adult_54_years	chr3	68500636	68500647	68500636	+	High_confidence	18	18	50	1.856601	4.614311	chr3	68500509	68500731	DNA|hAT-Charlie|MER58A	+	chr3	68500636	68505872	LOC105377146|NR_135532.1	+	68500636,68505546	68500934,68505872	0.960000
testis_male_adult_54_years	chr19	38289143	38289176	38289175	+	High_confidence	5	5	12	0.445584	3.459432	chr19	38289206	38289513	SINE|Alu|AluSc8	+	chr19	38288405	38292468	SPINT2|ENST00000585357.1	+	38288405,38290536	38290280,38292468	0.916667
testis_male_adult_54_years	chr16	15181278	15181312	15181278	+	High_confidence	7	8	25	0.928300	4.563856	chr16	15181175	15181717	LTR|ERVL-MaLR|MLT1H	+	chr16	15181432	15185598	STRG.304056.1	+	15181432,15185564	15181638,15185598	0.840000
testis_male_adult_54_years	chr13	74419170	74419202	74419176	+	High_confidence	12	12	38	1.411016	4.984770	chr13	74419156	74419274	LTR|Gypsy|MamGypLTR2c	+	chr13	74419157	74444735	LINC00381|ENST00000649990.1	+	74419157,74426092,74434502,74443159,74444097	74419228,74426418,74434622,74443284,74444735	0.921053
testis_male_adult_54_years	chr10	31491146	31491155	31491154	+	RAMPAGE_only	7	8	15	0.556980	3.807355	chr10	31486657	31491759	LINE|L1|L1MD2	-	chr10	31321620	31529814	ZEB1|NM_001323671.1	+	31321620,31387123,31461036,31495775,31502347,31510672,31514602,31520125,31523932,31526671	31321851,31387266,31461237,31495838,31502509,31510875,31514708,31521936,31524113,31529814	0.600000
testis_male_adult_54_years	chr6	130960885	130960886	130960885	-	RAMPAGE_only	6	7	8	0.297056	2.750000	chr6	130960862	130960975	LINE|L2|L2a	+	chr6	130858135	130956485	EPB41L2|ENST00000527659.5	-	130858135,130863637,130865535,130869811,130885095,130890293,130894343,130894966,130899490,130900961,130904464,130908820,130926604,130955104,130955993	130858243,130863718,130865634,130870126,130885268,130890466,130894441,130895119,130899578,130901180,130904540,130908863,130926709,130955317,130956485	1.000000
testis_male_adult_54_years	chr15	93554740	93554758	93554740	+	RAMPAGE_only	2	2	8	0.297056	2.750000	chr15	93554462	93554985	LTR|ERV1|LTR12	+	chr15	93532772	93555122	STRG.300162.1	+	93532772,93553604	93532973,93555122	0.750000
testis_male_adult_54_years	chr5	50799818	50799824	50799823	+	RAMPAGE_only	4	5	12	0.445584	3.095795	chr5	50799661	50800035	LTR|ERVL-MaLR|MLT1A0	+	chr5	50814296	50842341	STRG.117335.5	+	50814296,50815431,50821212,50822334,50824907,50826754,50827943,50828311,50829891,50832780,50833978,50834930,50841965	50814955,50815524,50821338,50822400,50824975,50826803,50828056,50828384,50829961,50832854,50834048,50835015,50842341	0.833333
testis_male_adult_54_years	chr5	140703678	140703679	140703678	+	RAMPAGE_only	4	5	6	0.222792	2.584963	chr5	140703533	140703776	LTR|ERVL-MaLR|MLT1F	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	1.000000
testis_male_adult_54_years	chr15	29686769	29686770	29686769	+	High_confidence	16	18	22	0.816904	4.243300	chr15	29686408	29686972	LTR|ERV1|LTR12F	+	chr15	29686910	29687561	STRG.290912.1	+	29686910	29687561	0.909091
testis_male_adult_54_years	chr5	176221337	176221338	176221337	-	High_confidence	889	894	990	36.760691	4.456078	chr5	176220923	176222588	LTR|ERV1|LTR12C	-	chr5	176173352	176221349	STRG.133394.5	-	176173352,176174973,176176281,176176758,176180815,176183230,176185100,176186161,176204748,176220906	176173563,176175901,176176450,176180348,176182763,176183301,176185342,176186380,176204927,176221349	0.958586
testis_male_adult_54_years	chr5	66504284	66504286	66504284	+	High_confidence	3	6	9	0.334188	2.750000	chr5	66503112	66504552	LTR|ERV1|LTR12C	+	chr5	66504124	66512034	STRG.118952.1	+	66504124,66510599	66504857,66512034	0.888889
testis_male_adult_54_years	chr10	49137478	49137479	49137478	+	RAMPAGE_only	7	7	9	0.334188	3.000000	chr10	49137279	49137768	LTR|ERVL-MaLR|MLT1G3	+	chr10	49121843	49150974	FAM170B-AS1|ENST00000443389.5	+	49121843,49141252,49142929,49145781,49148606,49150804	49122276,49141367,49143088,49145900,49148663,49150974	0.555556
testis_male_adult_54_years	chr9	102992261	102992293	102992292	+	RAMPAGE_only	13	17	32	1.188224	4.875000	chr9	102992092	102992441	LINE|L1|L1MA6	+	chr9	102995310	103018488	CYLC2|NM_001340.4	+	102995310,103001577,103003141,103004694,103004968,103011981,103016887,103018324	102995397,103001618,103003263,103004851,103006378,103012097,103016961,103018488	1.000000
testis_male_adult_54_years	chr17	70128977	70129027	70129026	-	High_confidence	6	6	17	0.631244	3.969816	chr17	70128761	70129144	LTR|ERV1|MER48	-	chr17	70116519	70128989	STRG.321298.4	-	70116519,70128642	70128157,70128989	0.882353
testis_male_adult_54_years	chr17	2975628	2975665	2975664	+	RAMPAGE_only	10	13	52	1.930865	5.116258	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2853659	3008090	STRG.312322.4	+	2853659,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010	2854102,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008090	0.865385
testis_male_adult_54_years	chr1	233177357	233177366	233177365	-	High_confidence	5	8	18	0.668376	3.286896	chr1	233177043	233177630	LTR|ERV1|LTR10C	+	chr1	233095656	233177835	PCNX2|ENST00000486012.5	-	233095656,233135012,233139713,233161270,233177801	233095863,233135190,233139855,233161363,233177835	0.722222
testis_male_adult_54_years	chr10	7619672	7619673	7619672	-	High_confidence	79	87	89	3.304749	5.145129	chr10	7619498	7619860	LTR|ERVL-MaLR|THE1D	-	chr10	7559269	7619673	ITIH5|NM_032817.5	-	7559269,7566029,7569667,7573141,7576452,7579754,7585900,7615981,7617112,7619580	7563384,7566407,7569784,7573195,7577012,7580064,7586069,7616098,7617282,7619673	0.910112
testis_male_adult_54_years	chr19	52770422	52770429	52770422	-	RAMPAGE_only	4	4	10	0.371320	2.947703	chr19	52770168	52770456	SINE|Alu|AluSx3	+	chr19	52764194	52786763	ZNF600|ENST00000338230.3	-	52764194,52778825,52786594	52767772,52778907,52786763	0.500000
testis_male_adult_54_years	chr11	78977280	78977334	78977307	+	High_confidence	12	15	65	2.413581	4.854824	chr11	78976989	78977347	LTR|ERVL-MaLR|MLT1C	-	chr11	78977314	78977837	STRG.238210.1	+	78977314	78977837	0.830769
testis_male_adult_54_years	chr13	51695781	51695816	51695781	-	High_confidence	12	12	42	1.559544	5.023037	chr13	51690196	51696329	LINE|L1|L1PA3	-	chr13	51694216	51695822	STRG.269249.1	-	51694216	51695822	1.000000
testis_male_adult_54_years	chr17	62520784	62520841	62520840	+	RAMPAGE_only	13	15	40	1.485280	4.953056	chr17	62520890	62521168	SINE|Alu|AluJr	+	chr17	62480767	62615481	TLK2|NM_001284363.1	+	62480767,62481120,62520772,62522203,62523133,62536169,62552301,62553662,62560015,62565000,62573214,62576708,62578476,62580110,62586134,62596584,62600650,62602041,62606129,62608040,62612391	62480787,62481206,62520844,62522273,62523177,62536337,62552397,62553755,62560126,62565137,62573367,62576775,62578574,62580192,62586226,62596674,62600820,62602180,62606241,62608148,62615481	0.750000
testis_male_adult_54_years	chr5	139443689	139443696	139443689	-	High_confidence	2	2	7	0.259924	2.584963	chr5	139443386	139443669	SINE|Alu|AluJo	-	chr5	139426186	139444482	DNAJC18|ENST00000515581.5	-	139426186,139428537,139437371,139439405,139442286,139443684,139444308	139426357,139428683,139437558,139439492,139442484,139443767,139444482	0.571429
testis_male_adult_54_years	chr17	73233775	73233806	73233797	+	High_confidence	15	16	51	1.893733	5.157432	chr17	73233581	73233900	SINE|Alu|AluSx	+	chr17	73233219	73247527	STRG.321824.9	+	73233219,73235475,73242243	73233968,73236995,73247527	1.000000
testis_male_adult_54_years	chr5	151753024	151753073	151753072	+	High_confidence	10	11	24	0.891168	4.277613	chr5	151752860	151753390	LTR|ERVL-MaLR|MLT1F	+	chr5	151752864	151758323	STRG.130419.1	+	151752864,151753672,151756937,151758288	151753309,151754122,151757071,151758323	0.875000
testis_male_adult_54_years	chr6	30034957	30034989	30034972	-	High_confidence	2	2	8	0.297056	2.807355	chr6	30034865	30035742	LINE|L1|HAL1	-	chr6	30012098	30035015	ZNRD1ASP|ENST00000444051.1	-	30012098,30034907	30021761,30035015	0.625000
testis_male_adult_54_years	chr9	123179187	123179221	123179220	-	RAMPAGE_only	50	52	129	4.790029	6.059903	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.937984
testis_male_adult_54_years	chr12	129109621	129109641	129109640	+	High_confidence	4	4	11	0.408452	3.121928	chr12	129109479	129109833	LTR|ERVL-MaLR|THE1A	+	chr12	129109628	129113294	TMEM132D-AS1|ENST00000512133.6	+	129109628,129113064	129111669,129113294	0.909091
testis_male_adult_54_years	chr1	222890169	222890171	222890170	+	High_confidence	4	6	8	0.297056	3.000000	chr1	222890097	222890218	LINE|L2|L2c	-	chr1	222889750	222895462	STRG.25660.1	+	222889750	222895462	1.000000
testis_male_adult_54_years	chr6	26956526	26956585	26956553	-	High_confidence	37	57	224	8.317570	6.978938	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.638393
testis_male_adult_54_years	chr5	106205653	106205688	106205653	-	High_confidence	86	87	127	4.715765	5.681628	chr5	106205339	106206597	LTR|ERV1|LTR12C	-	chr5	106204253	106205676	STRG.123351.1	-	106204253	106205676	0.976378
testis_male_adult_54_years	chr14	58439687	58439713	58439701	+	High_confidence	58	59	151	5.606934	5.910894	chr14	58439673	58439793	LINE|L2|L2c	-	chr14	58439680	58537213	KIAA0586|NM_001244193.1	+	58439680,58442705,58443953,58448339,58450578,58453349,58456701,58457758,58458472,58459842,58460985,58465834,58467734,58470612,58472198,58474606,58477122,58482512,58487006,58487886,58488620,58490163,58492143,58498782,58508554,58512521,58537006	58439780,58442880,58444175,58448493,58450746,58453473,58456810,58457979,58458545,58460070,58461160,58466029,58467922,58470723,58472279,58474797,58477241,58482712,58487166,58488109,58488874,58490240,58492275,58498960,58508709,58512627,58537213	0.933775
testis_male_adult_54_years	chr3	14593759	14593783	14593774	-	High_confidence	7	7	30	1.113960	4.450212	chr3	14593698	14593849	DNA|hAT-Charlie|MER20B	-	chr3	14592691	14593541	STRG.63339.1	-	14592691	14593541	0.566667
testis_male_adult_54_years	chr12	108920196	108920209	108920202	-	RAMPAGE_only	5	5	18	0.668376	3.969816	chr12	108919806	108920342	LTR|ERVL-MaLR|MLT1F2	+	chr12	108907740	109021240	SVOP|ENST00000610966.4	-	108907740,108915782,108918042,108919674,108922689,108934194,108937263,108938826,108940783,108945102,108960922,108972404,108977397,108978577,108983600,109020833	108912741,108915872,108918124,108919786,108922797,108934271,108937337,108938955,108940909,108945166,108961047,108972476,108977496,108978663,108983761,109021240	0.666667
testis_male_adult_54_years	chr20	37692694	37692721	37692720	+	RAMPAGE_only	6	7	15	0.556980	3.324863	chr20	37692689	37692992	LINE|L2|L2a	-	chr20	37693954	37872128	CTNNBL1|ENST00000621317.4	+	37693954,37732878,37737377,37746467,37757045,37757570,37765196,37767952,37777344,37777653,37779186,37802866,37840101,37842338,37859898,37860271,37871924	37694152,37733067,37737484,37746630,37757049,37757656,37765290,37768044,37777417,37777712,37779335,37803048,37840199,37842419,37860036,37860344,37872128	0.733333
testis_male_adult_54_years	chr10	101819067	101819095	101819068	+	High_confidence	32	62	126	4.678633	6.098237	chr10	101819017	101819314	LINE|L2|L2c	-	chr10	101819067	101828889	KCNIP2-AS1|NR_045118.1	+	101819067,101827859,101828180	101819248,101827939,101828889	0.706349
testis_male_adult_54_years	chr4	121038983	121038984	121038983	-	High_confidence	6	7	7	0.259924	2.584963	chr4	121038704	121039000	SINE|Alu|AluJb	+	chr4	121037083	121038984	NDNF|ENST00000506900.1	-	121037083,121037961,121038861	121037657,121038181,121038984	0.857143
testis_male_adult_54_years	chr7	818433	818445	818444	+	RAMPAGE_only	16	16	34	1.262488	4.779094	chr7	818112	818870	LINE|L1|L1MB5	-	chr7	816754	842086	SUN1|ENST00000439679.5	+	816754,832019,832504,838797,841945	816871,832101,832601,838986,842086	0.617647
testis_male_adult_54_years	chr13	66010162	66010163	66010162	+	High_confidence	73	74	89	3.304749	5.392021	chr13	66009201	66010503	LTR|ERV1|LTR12C	+	chr13	66010176	66114531	STRG.270587.1	+	66010176,66053960,66090217,66114486	66010912,66054032,66090254,66114531	0.977528
testis_male_adult_54_years	chr10	64197112	64197197	64197170	+	High_confidence	3	5	36	1.336752	4.712319	chr10	64196078	64197328	LTR|ERV1|LTR12C	-	chr10	64197080	64302540	STRG.219713.1	+	64197080,64286465,64301515	64197573,64286545,64302540	0.944444
testis_male_adult_54_years	chr17	38810332	38810353	38810332	-	High_confidence	3	3	6	0.222792	2.584963	chr17	38810300	38810417	LINE|L2|L2b	+	chr17	38801724	38810595	STRG.317134.9	-	38801724,38802699,38806296,38806764,38809701,38810275	38802206,38802861,38806395,38806976,38809765,38810595	0.833333
testis_male_adult_54_years	chr3	81562102	81562109	81562102	-	RAMPAGE_only	4	4	11	0.408452	2.845351	chr3	81562068	81562190	LINE|L2|L2b	+	chr3	81534666	81577943	GBE1|ENST00000484687.1	-	81534666,81536910,81577924	81535325,81537095,81577943	0.909091
testis_male_adult_54_years	chr9	62897430	62897431	62897430	+	High_confidence	14	14	18	0.668376	4.058814	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.833333
testis_male_adult_54_years	chr17	15154917	15154924	15154923	+	High_confidence	33	33	55	2.042261	5.476725	chr17	15154619	15155368	LTR|Gypsy|MamGypLTR1b	-	chr17	15154938	15155789	STRG.313551.1	+	15154938,15155395	15155041,15155789	0.581818
testis_male_adult_54_years	chr3	106414590	106414591	106414590	-	RAMPAGE_only	4	4	6	0.222792	2.584963	chr3	106414511	106414634	LINE|L2|L2a	+	chr3	106367989	106423398	STRG.73508.3	-	106367989,106384610,106385649,106414499,106417533,106423348	106368216,106384723,106385886,106414589,106417753,106423398	0.833333
testis_male_adult_54_years	chr4	29118302	29118305	29118303	+	High_confidence	42	102	137	5.087086	4.956333	chr4	29117170	29118621	LTR|ERV1|LTR12C	+	chr4	29118307	29202770	AC109349.1|ENST00000503299.1	+	29118307,29118731,29202480	29118644,29118862,29202770	0.927007
testis_male_adult_54_years	chr1	228194687	228194716	228194715	+	High_confidence	33	33	55	2.042261	4.968210	chr1	228194570	228194729	DNA|hAT-Charlie|Charlie1b	-	chr1	228194387	228197948	STRG.26292.1	+	228194387,228197567	228194767,228197948	0.963636
testis_male_adult_54_years	chr10	47310701	47310702	47310701	+	RAMPAGE_only	6	6	7	0.259924	2.584963	chr10	47310748	47310844	SINE|MIR|MIR	+	chr10	47300385	47313547	GDF10|ENST00000580279.1	+	47300385,47309795,47312600	47300970,47310721,47313547	0.857143
testis_male_adult_54_years	chr15	73731750	73731751	73731750	-	High_confidence	170	170	195	7.240742	5.729896	chr15	73731362	73732696	LTR|ERV1|LTR12C	-	chr15	73730047	73731711	AC022188.1|ENST00000620960.1	-	73730047	73731711	0.989744
testis_male_adult_54_years	chr15	83609272	83609292	83609277	+	High_confidence	5	5	16	0.594112	3.625000	chr15	83609249	83609484	DNA|TcMar-Tigger|Tigger15a	+	chr15	83609269	83618642	SH3GL3|ENST00000564054.1	+	83609269,83618081	83609466,83618642	0.875000
testis_male_adult_54_years	chr7	119950824	119950825	119950824	-	High_confidence	56	56	73	2.710637	4.303375	chr7	119950307	119952074	LTR|ERV1|LTR12C	-	chr7	119950455	119950910	STRG.172625.1	-	119950455	119950910	0.767123
testis_male_adult_54_years	chr12	131061793	131061814	131061813	-	High_confidence	13	18	50	1.856601	4.491862	chr12	131061519	131062014	LINE|L1|L1MD1	-	chr12	131059640	131061482	STRG.263846.1	-	131059640	131061482	0.920000
testis_male_adult_54_years	chr3	52615383	52615438	52615423	-	High_confidence	3	4	17	0.631244	3.750000	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.823529
testis_male_adult_54_years	chr21	45593653	45593667	45593653	+	High_confidence	30	30	50	1.856601	4.724386	chr21	45593458	45593784	LTR|ERVL-MaLR|THE1A	+	chr21	45593653	45603056	LINC01694|ENST00000441095.2	+	45593653,45596390	45593708,45603056	0.900000
testis_male_adult_54_years	chr2	233448858	233448873	233448872	+	RAMPAGE_only	7	8	16	0.594112	4.000000	chr2	233448452	233449071	LTR|ERV1|MER51A	-	chr2	233438312	233472104	DGKD|ENST00000430834.1	+	233438312,233441886,233445622,233446711,233448086,233448275,233449102,233449981,233450921,233451963,233454356,233454762,233456898,233457220,233458283,233459756,233460193,233462347,233462642,233464163,233467085,233468422,233469370	233438379,233441995,233445762,233446796,233448181,233448375,233449376,233450131,233451050,233452060,233454464,233454873,233456995,233457328,233458397,233459891,233460345,233462459,233462735,233464283,233467203,233468553,233472104	0.875000
testis_male_adult_54_years	chr10	65811679	65811680	65811679	-	High_confidence	10	10	15	0.556980	3.467720	chr10	65811231	65812586	LTR|ERV1|LTR12E	-	chr10	65782982	65811833	STRG.219830.1	-	65782982,65786836,65811347	65785189,65786976,65811833	0.866667
testis_male_adult_54_years	chr12	121129041	121129043	121129042	-	High_confidence	3	5	7	0.259924	2.521641	chr12	121129036	121129482	LTR|ERVL-MaLR|MLT1O	+	chr12	121126689	121129027	STRG.262499.1	-	121126689	121129027	0.857143
testis_male_adult_54_years	chr16	2760015	2760018	2760017	+	High_confidence	10	13	19	0.705508	3.641604	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	0.947368
testis_male_adult_54_years	chr19	44562832	44562833	44562832	-	High_confidence	339	407	426	15.818237	6.186109	chr19	44562417	44563770	LTR|ERV1|LTR12C	-	chr19	44560383	44562820	STRG.337788.4	-	44560383	44562820	0.936620
testis_male_adult_54_years	chr4	181844058	181844079	181844066	-	RAMPAGE_only	3	3	9	0.334188	3.000000	chr4	181843713	181844017	SINE|Alu|AluSg	-	chr4	181820018	181829973	TEMN3-AS1|ENST00000510211.1	-	181820018,181821555,181829923	181820295,181821629,181829973	0.555556
testis_male_adult_54_years	chr17	77481983	77481984	77481983	+	High_confidence	4	4	7	0.259924	2.584963	chr17	77482007	77482103	SINE|MIR|MIRb	+	chr17	77481912	77488788	SEPT9|ENST00000585638.1	+	77481912,77482143,77487423,77488239,77488726	77482012,77482335,77487552,77488321,77488788	0.857143
testis_male_adult_54_years	chr7	74913376	74913377	74913376	-	High_confidence	6	6	6	0.222792	2.584963	chr7	74913369	74913427	DNA|hAT-Ac|OldhAT1	+	chr7	74906672	74913256	SPDYE12P|ENST00000618416.1	-	74906672,74906851,74909521,74910836,74911928,74913150	74906729,74907095,74909607,74910895,74912147,74913256	1.000000
testis_male_adult_54_years	chr11	134037548	134037567	134037548	-	High_confidence	1	1	7	0.259924	2.584963	chr11	134037531	134037645	SINE|MIR|MIR3	-	chr11	134035831	134037107	AP000911.2|ENST00000526377.1	-	134035831,134036896	134036750,134037107	0.714286
testis_male_adult_54_years	chr3	97924254	97924279	97924278	+	High_confidence	15	16	29	1.076828	4.521641	chr3	97923811	97924415	LINE|L1|L1ME3C	+	chr3	97924211	97944957	CRYBG3|ENST00000485253.1	+	97924211,97933693,97936784,97941147,97942283,97943225,97944833	97924411,97933833,97936908,97941306,97942443,97943570,97944957	0.931034
testis_male_adult_54_years	chr10	103100692	103100694	103100692	-	RAMPAGE_only	8	10	14	0.519848	3.807355	chr10	103100657	103100952	SINE|tRNA|LFSINE_Vert	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	1.000000
testis_male_adult_54_years	chr13	82257971	82258042	82258020	-	High_confidence	22	24	124	4.604369	6.078831	chr13	82257795	82259579	LTR|ERV1|LTR12C	+	chr13	82257383	82258524	STRG.272611.1	-	82257383	82258524	0.701613
testis_male_adult_54_years	chr4	86453681	86453695	86453681	-	High_confidence	3	3	7	0.259924	2.584963	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016085	86453436	MAPK10|ENST00000641170.1	-	86016085,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453436	0.857143
testis_male_adult_54_years	chr22	35403533	35403534	35403533	+	RAMPAGE_only	7	7	8	0.297056	2.807355	chr22	35403549	35403658	SINE|MIR|MIRb	+	chr22	35400430	35410872	MCM5|ENST00000444778.1	+	35400430,35403517,35406552,35408407,35410743	35400498,35403542,35406725,35408563,35410872	0.625000
testis_male_adult_54_years	chr4	89490948	89490949	89490948	+	High_confidence	884	888	944	35.052618	5.407928	chr4	89489873	89491365	LTR|ERV1|LTR12C	+	chr4	89490874	89629760	STRG.97902.5	+	89490874,89587820,89627781	89491494,89587940,89629760	0.963983
testis_male_adult_54_years	chr1	232314261	232314264	232314261	-	High_confidence	76	76	125	4.641501	5.364650	chr1	232313838	232314457	LTR|ERV1|LTR12_	-	chr1	232313526	232314276	STRG.26971.1	-	232313526	232314276	0.856000
testis_male_adult_54_years	chr15	52577492	52577578	52577530	-	RAMPAGE_only	12	13	49	1.819469	5.053509	chr15	52577477	52577611	DNA|hAT-Charlie|MER3	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	0.632653
testis_male_adult_54_years	chr2	21317679	21317709	21317708	+	High_confidence	86	86	219	8.131910	5.719976	chr2	21317605	21318633	LTR|ERV1|LTR78	+	chr2	21317527	21320117	STRG.32098.1	+	21317527,21318921	21317813,21320117	0.858447
testis_male_adult_54_years	chr12	75234712	75234773	75234772	+	High_confidence	9	9	37	1.373884	4.334736	chr12	75234335	75235407	LINE|CR1|L3	+	chr12	75234739	75251865	AC091534.1|ENST00000548779.1	+	75234739,75250492	75235117,75251865	0.972973
testis_male_adult_54_years	chr17	68081754	68081755	68081754	+	High_confidence	317	317	327	12.142168	5.338303	chr17	68080472	68082166	LTR|ERV1|LTR12C	+	chr17	68081759	68084508	STRG.321498.2	+	68081759	68084508	0.944954
testis_male_adult_54_years	chr3	25873691	25873736	25873718	-	High_confidence	27	28	79	2.933429	5.881431	chr3	25873562	25874112	LTR|ERVL-MaLR|MLT1G1	-	chr3	25861425	25873726	STRG.64891.1	-	25861425,25863284,25870014,25871800,25872314,25873640	25863053,25863379,25870135,25871896,25872482,25873726	0.658228
testis_male_adult_54_years	chr19	40347313	40347314	40347313	-	RAMPAGE_only	14	14	15	0.556980	3.807355	chr19	40347248	40347554	SINE|Alu|AluSp	+	chr19	40321062	40348386	C19orf47|ENST00000392035.6	-	40321062,40324005,40326333,40328412,40333850,40336109,40336319,40341785,40348323	40322376,40324076,40326486,40328550,40333929,40336224,40336407,40341890,40348386	0.866667
testis_male_adult_54_years	chr15	60894012	60894016	60894015	-	RAMPAGE_only	4	4	11	0.408452	3.277613	chr15	60893837	60893971	SINE|MIR|MIRc	-	chr15	60883337	60898349	STRG.295580.1	-	60883337,60889452	60888095,60898349	0.909091
testis_male_adult_54_years	chr5	134613212	134613242	134613239	-	High_confidence	2	2	9	0.334188	2.750000	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606986	134613137	SAR1B|ENST00000509730.5	-	134606986,134608371,134609570,134612690,134613013	134607066,134608503,134609674,134612756,134613137	0.666667
testis_male_adult_54_years	chr13	107664049	107664074	107664070	-	RAMPAGE_only	6	7	22	0.816904	4.011365	chr13	107663687	107664598	LINE|L2|L2	+	chr13	107659724	107676632	STRG.276064.1	-	107659724	107676632	0.954545
testis_male_adult_54_years	chr2	65725488	65725499	65725493	+	High_confidence	34	34	92	3.416145	5.795612	chr2	65725219	65726122	LTR|ERVL|MER21C	+	chr2	65725496	65730789	STRG.39426.2	+	65725496,65726579,65730498	65725765,65726622,65730789	0.717391
testis_male_adult_54_years	chr1	81462258	81462260	81462258	+	RAMPAGE_only	4	8	12	0.445584	3.584963	chr1	81461986	81462488	LTR|ERV1|LTR12	+	chr1	81467027	81467505	STRG.10767.1	+	81467027	81467505	0.583333
testis_male_adult_54_years	chr16	56188124	56188135	56188124	-	RAMPAGE_only	2	3	7	0.259924	2.584963	chr16	56188096	56188140	DNA|hAT-Charlie|MER5B	-	chr16	56101648	56191214	STRG.307104.2	-	56101648,56140316,56161887,56187602,56189501	56102319,56144012,56162106,56187700,56191214	0.571429
testis_male_adult_54_years	chr3	147245190	147245191	147245190	-	High_confidence	23	23	23	0.854036	4.436605	chr3	147244906	147246119	LTR|ERV1|LTR12C	-	chr3	147156295	147245394	STRG.79928.1	-	147156295,147244837	147156561,147245394	0.521739
testis_male_adult_54_years	chr11	86955934	86955950	86955949	+	High_confidence	3	5	8	0.297056	2.750000	chr11	86955862	86955972	SINE|MIR|MIRb	+	chr11	86956090	87000490	AP001528.1|ENST00000531827.1	+	86956090,86957981,86999875	86956260,86958026,87000490	0.500000
testis_male_adult_54_years	chr15	25973303	25973304	25973303	+	High_confidence	11	11	16	0.594112	2.840224	chr15	25973105	25973713	LTR|ERV1|LTR12_	+	chr15	25973383	25974213	STRG.290170.1	+	25973383	25974213	0.812500
testis_male_adult_54_years	chr4	79086113	79086145	79086141	+	High_confidence	5	5	17	0.631244	3.625000	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.588235
testis_male_adult_54_years	chr14	23261154	23261192	23261191	+	High_confidence	8	8	26	0.965432	4.563856	chr14	23260891	23261480	LTR|ERV1|LTR10C	-	chr14	23261305	23273402	RNF212B|ENST00000492355.5	+	23261305,23262927,23264622,23268923,23269862,23270599,23272822,23273366	23261329,23262970,23264671,23268963,23269960,23270661,23272977,23273402	0.576923
testis_male_adult_54_years	chr15	44414107	44414139	44414107	+	RAMPAGE_only	6	6	24	0.891168	4.186704	chr15	44413807	44414135	SINE|Alu|AluSq2	-	chr15	44288759	44415757	CASC4|ENST00000345795.6	+	44288759,44322964,44328684,44331987,44337762,44338236,44379689,44380805,44413335	44289356,44323019,44328787,44332078,44337907,44338317,44379788,44380976,44415757	0.875000
testis_male_adult_54_years	chr11	32718102	32718108	32718107	-	RAMPAGE_only	3	3	8	0.297056	2.807355	chr11	32717700	32718070	LTR|ERVL-MaLR|THE1D	-	chr11	32679860	32794610	CCDC73|ENST00000531481.1	-	32679860,32699250,32700790,32702872,32718075,32760108,32794348	32683574,32699325,32700826,32702944,32718147,32760258,32794610	0.875000
testis_male_adult_54_years	chr11	124076300	124076312	124076305	+	High_confidence	37	65	135	5.012821	6.060087	chr11	124074506	124076546	LTR|ERV1|MER52D	-	chr11	124075784	124078284	STRG.244130.1	+	124075784	124078284	0.985185
testis_male_adult_54_years	chr10	48339202	48339203	48339202	+	RAMPAGE_only	5	5	8	0.297056	2.807355	chr10	48336814	48340545	LINE|L1|L1PA17	+	chr10	48306689	48410146	STRG.217991.5	+	48306689,48308094,48325896,48401611,48404851,48409878,48410029	48306821,48308288,48364656,48401782,48404981,48409937,48410146	0.875000
testis_male_adult_54_years	chr4	117360628	117360640	117360639	+	High_confidence	15	15	29	1.076828	4.182006	chr4	117360517	117360864	LTR|ERV1|MER50	-	chr4	117360624	117372598	LINC02263|ENST00000420701.5	+	117360624,117361400,117371591,117372363	117360809,117361506,117371662,117372598	0.724138
testis_male_adult_54_years	chr21	24840517	24840572	24840549	+	RAMPAGE_only	9	9	37	1.373884	4.918781	chr21	24839625	24840646	LTR|ERV1|LTR12D	-	chr21	24844785	24845237	STRG.349563.1	+	24844785	24845237	0.729730
testis_male_adult_54_years	chr9	33815199	33815203	33815202	+	RAMPAGE_only	3	3	7	0.259924	2.584963	chr9	33814859	33815461	LINE|L1|L1MC3	+	chr9	33817183	33920403	UBE2R2|NM_017811.3	+	33817183,33886880,33900173,33911963,33917017	33817934,33886967,33900271,33912098,33920403	0.571429
testis_male_adult_54_years	chr12	106233806	106233808	106233806	+	High_confidence	52	76	84	3.119089	5.301261	chr12	106232849	106234119	LTR|ERV1|LTR12C	+	chr12	106233800	106234206	STRG.260819.1	+	106233800	106234206	0.857143
testis_male_adult_54_years	chr6	34757079	34757110	34757103	+	High_confidence	2	2	9	0.334188	2.947703	chr6	34757127	34757285	LINE|L2|L2a	+	chr6	34757093	34773857	SNRPC|NM_003093.2	+	34757093,34757911,34762594,34767907,34770290,34773445	34757551,34757954,34762703,34767997,34770395,34773857	0.888889
testis_male_adult_54_years	chr3	32626636	32626637	32626636	+	High_confidence	411	412	426	15.818237	5.792266	chr3	32625470	32627136	LTR|ERV1|LTR12C	+	chr3	32626649	32637620	STRG.65445.1	+	32626649,32637347	32627240,32637620	0.936620
testis_male_adult_54_years	chr1	82903293	82903312	82903293	+	High_confidence	2	2	7	0.259924	2.584963	chr1	82903320	82903492	SINE|MIR|MIR	+	chr1	82903182	83166815	LINC01362|ENST00000452901.5	+	82903182,82907467,82991859,82996714,82997472,83076140,83086211,83093800,83096864,83160605,83166703	82903823,82907582,82991980,82996776,82997589,83076224,83086314,83093983,83096977,83160666,83166815	0.714286
testis_male_adult_54_years	chr9	93015050	93015080	93015050	+	RAMPAGE_only	24	25	94	3.490409	5.193207	chr9	93014932	93015159	LINE|L1|L1ME1	-	chr9	92975249	93036236	FGD3|ENST00000467786.1	+	92975249,92976207,93002924,93004000,93006023,93010245,93011213,93013851,93015736,93018135,93019830,93020316,93022326,93029873,93032768,93035337	92975405,92976709,93003014,93004137,93006180,93010384,93011272,93013998,93015829,93018215,93019861,93020424,93022389,93029996,93034681,93036236	0.829787
testis_male_adult_54_years	chr20	18698825	18698833	18698825	+	RAMPAGE_only	4	4	10	0.371320	3.321928	chr20	18698768	18699018	LTR|ERVL-MaLR|MLT1L	-	chr20	18587941	18766644	DTD1|ENST00000647441.1	+	18587941,18593730,18596005,18620066,18628126,18744099,18763359	18588115,18593821,18596241,18620113,18628233,18744271,18766644	1.000000
testis_male_adult_54_years	chr6	41074464	41074465	41074464	+	RAMPAGE_only	7	7	9	0.334188	2.947703	chr6	41074294	41074597	LINE|L2|L2c	-	chr6	41073184	41097950	STRG.141237.7	+	41073184,41079028,41084045,41089578,41090203,41091527,41092911,41094395,41097356	41076295,41079164,41084192,41089710,41090309,41091694,41093085,41094497,41097950	1.000000
testis_male_adult_54_years	chr14	102830359	102830360	102830359	+	High_confidence	4	4	6	0.222792	2.584963	chr14	102830304	102830444	SINE|MIR|MIR3	-	chr14	102830353	102906255	TRAF3|ENST00000351691.9	+	102830353,102870184,102871916,102875623,102876357,102886188,102891324,102897260,102903254,102905212	102830472,102870446,102871968,102875728,102876525,102886269,102891417,102897401,102903429,102906255	0.833333
testis_male_adult_54_years	chr14	92733091	92733135	92733121	-	RAMPAGE_only	6	6	37	1.373884	4.900712	chr14	92732868	92733169	SINE|Alu|AluSg	+	chr14	92703846	92748603	LGMN|ENST00000557609.5	-	92703846,92704639,92706482,92709671,92711658,92711836,92712804,92713822,92714375,92717379,92718746,92732648,92748488	92704361,92704707,92706653,92709872,92711748,92711955,92712871,92713885,92714451,92717461,92718844,92732815,92748603	0.729730
testis_male_adult_54_years	chr1	110473619	110473631	110473619	-	High_confidence	8	8	31	1.151092	4.789015	chr1	110473468	110474039	LTR|ERVL|MER74B	-	chr1	110472312	110473614	STRG.14453.1	-	110472312,110473564	110472860,110473614	0.870968
testis_male_adult_54_years	chr6	77369117	77369167	77369166	-	High_confidence	107	146	454	16.857933	6.736304	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77148288	77369171	STRG.144813.1	-	77148288,77151818,77271339,77273026,77316635,77350621,77368885	77151280,77151974,77271493,77273307,77316704,77350734,77369171	0.947137
testis_male_adult_54_years	chr8	57219503	57219547	57219529	+	High_confidence	11	11	31	1.151092	4.840224	chr8	57219003	57219613	LTR|ERV1|MER50-int	-	chr8	57219088	57232636	LINC01606|ENST00000519160.5	+	57219088,57219409,57220110,57221398,57222168,57222594,57229544,57231391	57219138,57219623,57220295,57221607,57222271,57222696,57229728,57232636	0.645161
testis_male_adult_54_years	chr22	49657483	49657519	49657483	-	High_confidence	9	9	64	2.376449	5.616091	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.578125
testis_male_adult_54_years	chr7	151969650	151969651	151969650	+	High_confidence	13	13	17	0.631244	3.577820	chr7	151969392	151969798	LTR|ERV1|LTR71B	-	chr7	151970380	151983106	STRG.177367.13	+	151970380,151970944,151982872	151970701,151971065,151983106	0.705882
testis_male_adult_54_years	chr22	20219979	20220012	20220011	+	High_confidence	5	6	28	1.039696	4.280395	chr22	20219870	20220016	LTR|ERVL-MaLR|MLT1K	-	chr22	20219989	20221231	STRG.354377.2	+	20219989	20221231	1.000000
testis_male_adult_54_years	chr15	28844048	28844049	28844048	-	RAMPAGE_only	5	5	8	0.297056	2.750000	chr15	28843958	28844081	SINE|MIR|MIR1_Amn	-	chr15	28841832	28848675	GOLGA6L7|ENST00000567390.6	-	28841832,28843733,28844204,28845528,28845717,28845899,28846219,28847063,28848498	28843440,28843875,28844263,28845635,28845811,28845950,28846249,28847192,28848675	1.000000
testis_male_adult_54_years	chr3	70617749	70617789	70617785	+	High_confidence	103	109	311	11.548055	6.626032	chr3	70617119	70617866	LTR|ERV1|LTR17	+	chr3	70617761	70619772	STRG.69750.1	+	70617761,70619389	70617869,70619772	0.733119
testis_male_adult_54_years	chr19	51063607	51063632	51063607	-	RAMPAGE_only	11	11	34	1.262488	4.657882	chr19	51063472	51063654	SINE|MIR|MIRb	+	chr19	51056205	51064884	KLK13|ENST00000601975.5	-	51056205,51058537,51059744,51060432,51064597	51056775,51058674,51060093,51060619,51064884	0.764706
testis_male_adult_54_years	chr19	15828947	15828959	15828958	+	High_confidence	20	36	66	2.450713	5.562500	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15828957	15835415	UCA1|ENST00000642256.1	+	15828957,15831207,15834501	15829338,15831356,15835415	0.893939
testis_male_adult_54_years	chr17	20524445	20524449	20524445	-	High_confidence	7	8	17	0.631244	3.852169	chr17	20524058	20524458	LINE|L1|L1PB4	+	chr17	20519309	20524440	STRG.315257.2	-	20519309,20519771,20520875,20521344,20521595,20523399,20524232	20519613,20520752,20521096,20521459,20522228,20524083,20524440	0.941176
testis_male_adult_54_years	chr4	18418697	18418727	18418697	+	High_confidence	7	8	40	1.485280	4.853056	chr4	18417470	18418903	LTR|ERV1|LTR12C	-	chr4	18418418	18738301	STRG.90794.1	+	18418418,18488856,18629099,18738229	18418962,18488945,18629295,18738301	0.625000
testis_male_adult_54_years	chr7	153190677	153190737	153190725	+	RAMPAGE_only	4	4	16	0.594112	3.750000	chr7	153190599	153190973	LTR|ERVL-MaLR|MLT1J2	+	chr7	153222804	153228596	STRG.177245.1	+	153222804,153224707,153228446	153223176,153226348,153228596	0.500000
testis_male_adult_54_years	chr10	48178888	48178927	48178888	-	High_confidence	13	20	50	1.856601	5.198563	chr10	48178846	48179067	SINE|MIR|MIR	+	chr10	48158892	48178890	FRMPD2|ENST00000463706.1	-	48158892,48163327,48168594,48170993,48172945,48174869,48175845,48177711,48178817	48159238,48163671,48168693,48171208,48173093,48174955,48175939,48178151,48178890	0.960000
testis_male_adult_54_years	chr10	46872939	46872978	46872977	+	High_confidence	19	21	50	1.856601	5.175735	chr10	46872799	46873020	SINE|MIR|MIR	-	chr10	46872965	46895115	STRG.217846.1	+	46872965,46873715,46875931,46876915,46878778,46880663,46883183,46888214,46894513	46873049,46874155,46876025,46877001,46878926,46880878,46883282,46888558,46895115	0.880000
testis_male_adult_54_years	chr2	119997780	119997781	119997780	+	High_confidence	250	274	289	10.731151	5.515553	chr2	119996800	119998208	LTR|ERV1|LTR12C	+	chr2	119997754	119998996	STRG.45026.1	+	119997754	119998996	0.958478
testis_male_adult_54_years	chr7	80391454	80391475	80391474	-	High_confidence	20	26	60	2.227921	5.381728	chr7	80391409	80391776	LTR|ERVL-MaLR|THE1B	-	chr7	80370924	80391453	AC004862.1|ENST00000437763.7	-	80370924,80372126,80373811,80374340,80380294,80383902,80384848,80391428	80371577,80372294,80373990,80374460,80380474,80384124,80384979,80391453	0.983333
testis_male_adult_54_years	chr17	47056582	47056646	47056614	-	RAMPAGE_only	3	3	23	0.854036	4.106603	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46998699	47067469	AC068152.1|ENST00000571901.5	-	46998699,47021581,47033277,47054117,47056459,47067413	46998817,47021721,47033381,47054213,47056753,47067469	0.608696
testis_male_adult_54_years	chrX	147332225	147332244	147332243	-	RAMPAGE_only	3	3	9	0.334188	2.750000	chrX	147331839	147332334	LINE|L1|L1M7	+	chrX	147305378	147334586	STRG.370678.8	-	147305378	147334586	0.888889
testis_male_adult_54_years	chr8	49024848	49024849	49024848	+	High_confidence	37	38	43	1.596676	4.898153	chr8	49024590	49025378	LTR|ERV1|LTR12_	+	chr8	49024879	49025349	STRG.183802.1	+	49024879	49025349	0.860465
testis_male_adult_54_years	chr10	98202953	98203008	98202953	+	RAMPAGE_only	24	24	99	3.676069	5.036197	chr10	98202872	98203421	LINE|L1|L1MC4	+	chr10	98201598	98244892	STRG.224154.6	+	98201598,98208100,98231511,98234445,98235424,98236023,98244090	98205656,98209899,98231687,98234516,98235520,98236164,98244892	1.000000
testis_male_adult_54_years	chr17	70128922	70128938	70128922	-	High_confidence	5	7	17	0.631244	3.690117	chr17	70128761	70129144	LTR|ERV1|MER48	-	chr17	70116519	70128989	STRG.321298.4	-	70116519,70128642	70128157,70128989	0.647059
testis_male_adult_54_years	chr13	30996252	30996253	30996252	-	High_confidence	10	10	13	0.482716	3.418296	chr13	30996171	30996593	LTR|ERVL-MaLR|MSTB	+	chr13	30995161	30996138	LINC01066|ENST00000415283.1	-	30995161,30996053	30995475,30996138	0.846154
testis_male_adult_54_years	chr7	133906987	133906997	133906996	+	RAMPAGE_only	5	5	16	0.594112	3.702820	chr7	133906311	133907069	LTR|ERV1|LTR17	+	chr7	133253072	134065759	EXOC4|ENST00000253861.4	+	133253072,133274981,133288921,133305876,133317283,133356329,133374827,133475327,133480049,133630044,133817324,133895598,133917582,133937890,133997491,134004911,134007675,134064290	133253187,133275171,133289116,133306061,133317390,133356573,133375002,133475473,133480138,133630141,133817544,133895735,133917738,133938069,133997633,134005090,134007835,134065759	0.500000
testis_male_adult_54_years	chr5	162036857	162036868	162036857	+	RAMPAGE_only	2	2	7	0.259924	2.584963	chr5	162030925	162036952	LINE|L1|L1PA2	-	chr5	162061578	162155515	GABRG2|ENST00000638660.1	+	162061578,162093827,162095494,162097637,162101234,162103888,162142163,162149107,162151729,162153092	162061909,162093979,162095562,162097858,162101317,162104026,162142316,162149313,162151753,162155515	0.857143
testis_male_adult_54_years	chr17	62066657	62066679	62066657	+	High_confidence	4	4	8	0.297056	2.750000	chr17	62066638	62066687	SINE|MIR|MIRc	+	chr17	62066659	62067314	STRG.320763.1	+	62066659	62067314	0.750000
testis_male_adult_54_years	chr5	170267210	170267221	170267210	-	High_confidence	9	10	19	0.705508	3.787144	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.947368
testis_male_adult_54_years	chr16	75433980	75434033	75433980	-	High_confidence	5	5	26	0.965432	4.453661	chr16	75433678	75434907	DNA|TcMar-Tigger|Tigger17	+	chr16	75293709	75433489	CFDP1|NM_006324.2	-	75293709,75305023,75395089,75411824,75412534,75414577,75433288	75294042,75305182,75395209,75411952,75412754,75414695,75433489	0.846154
testis_male_adult_54_years	chr2	148184797	148184798	148184797	+	High_confidence	4	4	6	0.222792	2.584963	chr2	148184312	148185387	LINE|L1|L1MEh	-	chr2	148183836	148193958	STRG.48074.1	+	148183836	148193958	0.666667
testis_male_adult_54_years	chr17	76571901	76571939	76571938	-	RAMPAGE_only	5	5	10	0.371320	3.169925	chr17	76571863	76571953	SINE|MIR|MIRb	+	chr17	76566105	76570633	ST6GALNAC2|ENST00000585390.1	-	76566105,76567452,76568712,76570564	76566271,76567552,76568913,76570633	0.700000
testis_male_adult_54_years	chr6	88713182	88713222	88713221	+	RAMPAGE_only	3	3	9	0.334188	2.641604	chr6	88713058	88713402	LTR|ERVL-MaLR|MLT1A	+	chr6	88717650	88718093	STRG.146408.1	+	88717650	88718093	0.666667
testis_male_adult_54_years	chr10	130213507	130213544	130213518	+	High_confidence	39	48	194	7.203610	6.983682	chr10	130213296	130213675	LTR|ERV1|MER48	-	chr10	130213487	130239730	STRG.228000.6	+	130213487,130228461	130227912,130239730	0.809278
testis_male_adult_54_years	chr17	76570886	76570928	76570927	-	High_confidence	26	26	73	2.710637	5.760067	chr17	76570809	76571286	LTR|ERVL-MaLR|MLT1F1	+	chr17	76566105	76570633	ST6GALNAC2|ENST00000585390.1	-	76566105,76567452,76568712,76570564	76566271,76567552,76568913,76570633	0.630137
testis_male_adult_54_years	chr9	72521583	72521598	72521591	+	High_confidence	2	2	9	0.334188	3.000000	chr9	72521483	72521764	SINE|Alu|AluSx	+	chr9	72521607	72627969	TMC1|ENST00000643676.1	+	72521607,72616367,72627920	72521913,72616477,72627969	0.666667
testis_male_adult_54_years	chr13	54800047	54800078	54800047	+	RAMPAGE_only	6	6	16	0.594112	3.773557	chr13	54799141	54800235	LTR|ERV1|LTR12E	-	chr13	54797051	54898514	STRG.268884.1	+	54797051,54800654,54898223	54800259,54800815,54898514	0.687500
testis_male_adult_54_years	chr1	114854105	114854187	114854161	+	High_confidence	7	7	37	1.373884	4.810673	chr1	114854158	114854433	SINE|Alu|AluJo	-	chr1	114854802	114995370	SYCP1|NM_001282541.1	+	114854802,114855437,114856572,114857231,114857443,114858546,114859742,114860735,114874505,114876068,114876736,114878093,114885534,114886124,114887625,114895447,114910396,114911478,114913032,114913974,114923448,114926277,114926500,114944338,114944871,114946288,114947245,114977556,114981335,114984724,114994697,114994881	114855018,114855572,114856657,114857275,114857497,114858711,114859810,114860809,114874564,114876138,114876810,114878202,114885629,114886309,114887693,114895509,114910501,114911582,114913150,114914045,114923530,114926340,114926563,114944455,114944982,114946381,114947320,114977616,114981512,114984868,114994787,114995370	0.837838
testis_male_adult_54_years	chr2	27483289	27483300	27483299	-	RAMPAGE_only	4	4	9	0.334188	2.750000	chr2	27483001	27483259	SINE|Alu|AluJb	-	chr2	27470812	27489678	IFT172|ENST00000511842.5	-	27470812,27472249,27476640,27477216,27477558,27477994,27479508,27480025,27481045,27483288,27483579,27483871,27484226,27485017,27485359,27489614	27471095,27472362,27476726,27477320,27477612,27478156,27479604,27480149,27481260,27483376,27483659,27483937,27484266,27485130,27485503,27489678	0.777778
testis_male_adult_54_years	chr16	58749666	58749670	58749669	+	High_confidence	167	168	334	12.402092	6.049236	chr16	58748675	58750043	LTR|ERV1|LTR12C	+	chr16	58749676	58862081	AC092378.1|ENST00000565722.1	+	58749676,58862034	58750113,58862081	0.769461
testis_male_adult_54_years	chr19	53874819	53874847	53874819	+	RAMPAGE_only	7	7	12	0.445584	3.022055	chr19	53874763	53874953	SINE|Alu|AluSx	-	chr19	53869405	53876435	MYADM|ENST00000391769.2	+	53869405,53869753,53873527	53869598,53869838,53876435	1.000000
testis_male_adult_54_years	chr7	103184771	103184793	103184792	+	RAMPAGE_only	5	6	15	0.556980	3.323231	chr7	103184757	103184850	LINE|L1|L1M1	+	chr7	103194929	103215426	STRG.170391.2	+	103194929,103214564	103195068,103215426	0.733333
testis_male_adult_54_years	chr11	63616694	63616733	63616713	-	High_confidence	6	8	37	1.373884	4.810673	chr11	63616701	63616995	SINE|Alu|AluYe5	+	chr11	63574849	63616883	STRG.235607.2	-	63574849,63590099,63598060,63613999,63616586	63575046,63590368,63598163,63614068,63616883	0.540541
testis_male_adult_54_years	chr13	86792152	86792284	86792276	-	High_confidence	132	136	376	13.961636	6.558212	chr13	86792081	86793348	LTR|ERV1|LTR12C	+	chr13	86784721	86792572	STRG.273283.1	-	86784721	86792572	0.843085
testis_male_adult_54_years	chr15	26790265	26790266	26790265	-	High_confidence	73	73	75	2.784901	5.209224	chr15	26789854	26790549	LTR|ERV1|LTR12_	-	chr15	26789345	26790281	STRG.290285.8	-	26789345	26790281	0.906667
testis_male_adult_54_years	chr6	17856021	17856051	17856050	-	RAMPAGE_only	2	2	6	0.222792	2.584963	chr6	17855745	17856010	SINE|Alu|AluJo	-	chr6	17759182	17987463	KIF13A|ENST00000378814.9	-	17759182,17764154,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571,17796668,17799265,17799951,17804360,17805474,17808767,17817019,17825767,17826037,17828239,17831100,17833960,17836877,17837471,17849376,17850322,17851954,17855436,17856029,17873376,17898167,17987053,17987408	17760877,17764946,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794704,17796820,17799439,17800113,17804510,17805615,17808930,17817233,17825934,17826124,17828370,17831235,17834071,17837090,17837583,17849489,17850457,17852042,17855617,17856122,17873437,17898180,17987144,17987463	0.833333
testis_male_adult_54_years	chr19	50793141	50793159	50793141	-	High_confidence	3	4	10	0.371320	2.947703	chr19	50792969	50793186	DNA|TcMar-Tigger|MER46C	+	chr19	50785730	50793142	AC010325.1|ENST00000636757.1	-	50785730,50785941,50789617,50792404,50793113	50785823,50786001,50789715,50792504,50793142	0.600000
testis_male_adult_54_years	chr9	97575036	97575040	97575039	+	High_confidence	56	59	84	3.119089	5.169464	chr9	97574036	97575455	LTR|ERV1|LTR12C	+	chr9	97574953	97601748	STRG.206890.2	+	97574953,97591290,97599633	97575486,97591435,97601748	0.892857
testis_male_adult_54_years	chr20	41561955	41561956	41561955	-	RAMPAGE_only	5	5	8	0.297056	2.521641	chr20	41561226	41562259	LINE|L1|HAL1	-	chr20	41496808	41618375	CHD6|ENST00000373222.3	-	41496808,41499294,41512845,41514804,41533049,41564010,41618339	41498226,41499357,41512995,41514952,41533570,41564151,41618375	0.500000
testis_male_adult_54_years	chr20	50130092	50130118	50130092	-	RAMPAGE_only	26	26	96	3.564673	5.903706	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.822917
testis_male_adult_54_years	chr7	26637858	26637914	26637891	+	High_confidence	27	27	64	2.376449	5.433396	chr7	26637782	26637931	SINE|MIR|MIRc	-	chr7	26637870	26647270	C7orf71|ENST00000409974.7	+	26637870,26638494,26640695,26646299	26637936,26639344,26640764,26647270	0.812500
testis_male_adult_54_years	chr9	88464501	88464512	88464501	+	RAMPAGE_only	15	15	24	0.891168	4.368523	chr9	88464478	88464627	DNA|hAT-Charlie|Charlie1	+	chr9	88393475	88475203	STRG.205859.5	+	88393475,88426381,88448940,88462495,88468371,88475077	88418951,88426591,88448989,88462749,88468605,88475203	0.833333
testis_male_adult_54_years	chr18	48165243	48165265	48165243	-	High_confidence	2	2	9	0.334188	2.750000	chr18	48165129	48165218	SINE|MIR|MIR3	-	chr18	48026672	48165566	ZBTB7C|ENST00000588982.5	-	48026672,48039899,48162347,48165130	48029911,48041123,48162397,48165566	0.666667
testis_male_adult_54_years	chr14	63102079	63102091	63102079	-	High_confidence	5	7	14	0.519848	3.093069	chr14	63101880	63102189	SINE|Alu|AluY	+	chr14	62949817	63102037	KCNH5|ENST00000394964.3	-	62949817,62980871,62987071,63001330,63006365,63016830,63101799	62950559,62981264,62987187,63001459,63006472,63016954,63102037	0.785714
testis_male_adult_54_years	chr12	31117425	31117435	31117434	-	High_confidence	3	3	8	0.297056	2.500000	chr12	31117416	31117564	LTR|ERV1|HERVE-int	+	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.750000
testis_male_adult_54_years	chr2	38515496	38515517	38515496	-	High_confidence	3	4	11	0.408452	3.321928	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.636364
testis_male_adult_54_years	chr20	38317631	38317680	38317631	+	High_confidence	28	35	152	5.644066	5.876690	chr20	38317239	38317739	LTR|ERVL-MaLR|MLT1G	-	chr20	38317648	38337325	BPI|ENST00000417318.3	+	38317648,38318412,38320182,38323869,38324773,38326264,38327587,38331047,38334429,38335597,38337145	38317737,38318476,38320274,38324046,38324833,38326432,38327655,38331090,38334493,38335674,38337325	0.940789
testis_male_adult_54_years	chr5	13578552	13578574	13578573	-	High_confidence	4	4	10	0.371320	3.121928	chr5	13578350	13579755	LTR|ERV1|LTR12C	+	chr5	13523238	13578942	STRG.113283.1	-	13523238,13576595,13577959	13523312,13576668,13578942	0.700000
testis_male_adult_54_years	chr3	110969835	110969836	110969835	-	High_confidence	109	110	129	4.790029	6.416751	chr3	110969731	110970304	LTR|ERV1|LTR10C	-	chr3	110969348	110969936	STRG.74391.1	-	110969348	110969936	0.666667
testis_male_adult_54_years	chr6	148001730	148001731	148001730	+	RAMPAGE_only	10	10	12	0.445584	3.084963	chr6	148001485	148001765	LINE|L1|L1ME4a	-	chr6	148009007	148045777	STRG.154242.1	+	148009007	148045777	0.750000
testis_male_adult_54_years	chr11	104366017	104366021	104366017	-	High_confidence	5	6	10	0.371320	2.947703	chr11	104365603	104366774	LTR|ERV1|LTR12D	-	chr11	104365662	104366009	STRG.241118.1	-	104365662	104366009	0.500000
testis_male_adult_54_years	chr10	105820319	105820349	105820348	-	High_confidence	4	4	14	0.519848	3.664498	chr10	105820286	105820438	SINE|MIR|MIR3	-	chr10	105673609	105820333	LOC101927549|NR_120625.1	-	105673609,105817917,105819067,105820158	105673688,105818026,105819213,105820333	0.714286
testis_male_adult_54_years	chr19	17336685	17336727	17336719	+	High_confidence	17	17	62	2.302185	5.303448	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336723	17342730	GTPBP3|ENST00000598038.5	+	17336723,17338007,17338364,17338538,17338953,17339433,17341106,17341477,17342155	17337576,17338255,17338451,17338741,17339266,17339599,17341322,17341733,17342730	0.983871
testis_male_adult_54_years	chr4	38627354	38627400	38627354	-	RAMPAGE_only	2	2	13	0.482716	3.251629	chr4	38626721	38628102	LTR|ERV1|LTR12C	+	chr4	38612700	38664628	KLF3-AS1|NR_026804.1	-	38612700,38614624,38624421,38625601,38628038,38630499,38635955,38664175	38613259,38614708,38625283,38625762,38628102,38630581,38636058,38664628	0.538462
testis_male_adult_54_years	chr12	118751565	118751586	118751579	-	High_confidence	30	33	66	2.450713	4.597057	chr12	118751321	118751751	LTR|ERVL-MaLR|MLT1L	+	chr12	118749155	118751581	STRG.262121.1	-	118749155	118751581	0.984848
testis_male_adult_54_years	chr1	113952581	113952582	113952581	+	RAMPAGE_only	7	7	7	0.259924	2.521641	chr1	113952306	113952636	DNA|TcMar-Tigger|MER46C	+	chr1	113951144	113977804	HIPK1|ENST00000340480.8	+	113951144,113952765,113954650,113955562,113956626,113957123,113958065,113962316,113963386,113966129,113967765,113968441,113969955,113971823,113973023	113951292,113952889,113954770,113955649,113956811,113957286,113958291,113962438,113963521,113966272,113967948,113968648,113970197,113971954,113977804	0.571429
testis_male_adult_54_years	chr1	24799190	24799253	24799213	+	RAMPAGE_only	4	4	30	1.113960	4.593069	chr1	24798626	24800040	Retroposon|SVA|SVA_F	+	chr1	24745381	24844267	CLIC4|ENST00000488683.1	+	24745381,24797741,24814093,24827009,24839859,24840772,24844128	24745625,24797851,24814219,24827116,24840041,24842587,24844267	0.666667
testis_male_adult_54_years	chr3	165918797	165918820	165918813	+	High_confidence	4	4	16	0.594112	3.906891	chr3	165917730	165919011	LTR|ERV1|LTR12C	-	chr3	165918678	165920316	STRG.82426.1	+	165918678	165920316	0.875000
testis_male_adult_54_years	chr1	151994527	151994570	151994557	+	High_confidence	6	6	26	0.965432	4.293661	chr1	151994537	151994838	SINE|Alu|AluSx	+	chr1	151994530	152042774	AL450992.1|ENST00000432386.1	+	151994530,151998707,152010872,152014022,152015674,152016005,152016899,152018626,152020236,152021169,152021601,152022436,152041584	151994606,151998821,152010982,152014131,152015732,152016075,152018528,152018837,152020339,152021384,152021752,152022509,152042774	0.807692
testis_male_adult_54_years	chr22	17092546	17092576	17092561	-	High_confidence	13	13	62	2.302185	5.214288	chr22	17091866	17092688	LTR|ERVL|MER21B	+	chr22	17086351	17092559	STRG.353394.1	-	17086351,17092435	17087141,17092559	0.709677
testis_male_adult_54_years	chr16	50407179	50407184	50407179	+	High_confidence	5	5	10	0.371320	3.321928	chr16	50407131	50407374	SINE|MIR|MIR	-	chr16	50407700	50408513	AC007493.1|ENST00000567899.1	+	50407700,50408240	50407944,50408513	0.900000
testis_male_adult_54_years	chr9	128498544	128498558	128498557	+	RAMPAGE_only	4	4	8	0.297056	2.521641	chr9	128498530	128498750	SINE|MIR|MIR	+	chr9	128497501	128500391	ODF2|ENST00000488909.1	+	128497501,128499000,128500066	128498575,128499126,128500391	0.875000
testis_male_adult_54_years	chr3	49182213	49182214	49182213	-	High_confidence	57	57	61	2.265053	4.678953	chr3	49181796	49183179	LTR|ERV1|LTR12C	-	chr3	49179838	49182493	STRG.67529.1	-	49179838	49182493	0.918033
testis_male_adult_54_years	chr20	54059015	54059020	54059019	-	High_confidence	17	18	29	1.076828	4.664498	chr20	54058856	54059213	LTR|ERVL-MaLR|THE1D	-	chr20	53943537	54059020	BCAS1|NM_001323347.1	-	53943537,53953431,53975388,53985286,53995011,53995891,54028391,54058084,54058646,54058974	53944996,53953695,53975430,53985499,53995056,53996050,54028972,54058154,54058723,54059020	0.896552
testis_male_adult_54_years	chr14	83915325	83915368	83915361	-	High_confidence	16	17	39	1.448148	4.958354	chr14	83915196	83915738	LINE|L2|L2	+	chr14	83906871	83915050	LINC02305|ENST00000554142.1	-	83906871,83913947,83914978	83907181,83914041,83915050	0.589744
testis_male_adult_54_years	chr13	51200251	51200283	51200251	-	RAMPAGE_only	35	55	94	3.490409	6.161533	chr13	51200059	51200577	LTR|ERV1|LTR12	-	chr13	51190067	51192037	STRG.268154.1	-	51190067	51192037	0.606383
testis_male_adult_54_years	chr8	67911837	67911882	67911837	-	High_confidence	53	55	113	4.195917	5.565421	chr8	67911505	67912228	LINE|L2|L2	+	chr8	67911552	67911812	STRG.185583.1	-	67911552	67911812	0.672566
testis_male_adult_54_years	chr7	121062866	121062867	121062866	+	High_confidence	18	18	26	0.965432	4.251629	chr7	121062672	121063032	LTR|ERVL-MaLR|THE1B	+	chr7	121062876	121143839	STRG.172707.4	+	121062876,121064237,121097698,121099925,121124330,121125819,121127089,121128381,121130124,121133822,121136039,121140826,121141972	121062950,121064313,121097831,121100094,121124473,121125892,121127257,121128486,121130294,121133893,121136090,121141013,121143839	0.769231
testis_male_adult_54_years	chr9	85454052	85454071	85454067	+	High_confidence	12	14	43	1.596676	4.195321	chr9	85454033	85454146	LTR|ERVL-MaLR|MLT1H	+	chr9	85454068	85457669	STRG.205460.1	+	85454068,85457340	85454233,85457669	0.837209
testis_male_adult_54_years	chr7	5794470	5794471	5794470	+	High_confidence	120	141	154	5.718330	5.213744	chr7	5793408	5794887	LTR|ERV1|LTR12C	+	chr7	5794492	5816387	STRG.157814.5	+	5794492,5815733,5816197	5794887,5815875,5816387	0.500000
testis_male_adult_54_years	chr19	6953166	6953214	6953166	+	High_confidence	6	6	27	1.002564	4.213661	chr19	6953144	6953187	LTR|ERV1|MER66C	-	chr19	6953210	6954904	AC025278.1|ENST00000593558.1	+	6953210,6954528	6953349,6954904	0.814815
testis_male_adult_54_years	chr11	106555900	106555901	106555900	+	High_confidence	15	15	18	0.668376	4.058814	chr11	106555619	106556328	LTR|ERV1|LTR12_	+	chr11	106556124	106556459	STRG.241858.1	+	106556124	106556459	0.555556
testis_male_adult_54_years	chr5	137673842	137673843	137673842	-	High_confidence	16	16	19	0.705508	3.947703	chr5	137673728	137673810	LINE|L2|L2c	-	chr5	137671766	137673851	KLHL3|ENST00000514149.1	-	137671766,137672666,137673674	137671952,137672858,137673851	0.631579
testis_male_adult_54_years	chr22	35241505	35241533	35241524	+	High_confidence	145	148	412	15.298389	6.826055	chr22	35241003	35241950	LINE|L1|L1PBa1	-	chr22	35241508	35265567	STRG.356031.3	+	35241508,35255544,35262322,35263077,35263795,35263981,35264647	35241660,35255689,35262421,35263226,35263874,35264096,35265567	0.769417
testis_male_adult_54_years	chr16	29963560	29963561	29963560	+	High_confidence	14	15	18	0.668376	3.794653	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.500000
testis_male_adult_54_years	chr2	169479953	169479970	169479953	+	High_confidence	7	7	28	1.039696	4.494680	chr2	169479962	169480100	SINE|MIR|MIR3	+	chr2	169479501	169506490	STRG.50909.2	+	169479501,169482250,169487068,169487805,169487986,169492873,169493740,169497626,169499485,169503094,169504302,169504480	169480158,169482333,169487134,169487855,169488114,169493009,169493836,169497689,169499620,169503178,169504326,169506490	0.821429
testis_male_adult_54_years	chr4	184847103	184847109	184847103	-	High_confidence	7	8	24	0.891168	4.262692	chr4	184847008	184847142	DNA|hAT-Charlie|MER5A	+	chr4	184845987	184847106	STRG.110154.1	-	184845987,184846895	184846534,184847106	0.500000
testis_male_adult_54_years	chr2	17376531	17376547	17376546	+	High_confidence	3	5	7	0.259924	2.521641	chr2	17376574	17376637	LINE|RTE-X|L4_C_Mam	+	chr2	17376881	17382060	STRG.31339.1	+	17376881,17381884	17376950,17382060	0.571429
testis_male_adult_54_years	chrX	147329010	147329013	147329012	-	RAMPAGE_only	14	20	26	0.965432	4.293661	chrX	147328927	147329090	SINE|MIR|MIRb	+	chrX	147259702	147334586	STRG.370678.1	-	147259702,147279686,147280976,147283674,147285083,147286373,147290100,147317831,147332093	147271800,147279731,147282429,147283780,147285128,147286479,147298355,147329084,147334586	0.961538
testis_male_adult_54_years	chr1	16604243	16604244	16604243	-	High_confidence	18	18	18	0.668376	4.058814	chr1	16604205	16604278	LINE|CR1|L3	+	chr1	16564852	16604934	NBPF1|ENST00000392963.5	-	16564852,16565632,16566407,16567178,16567978,16569072,16573141,16574486,16575156,16576266,16577316,16579192,16580744,16581419,16582543,16591846,16592158,16604240,16604790	16564918,16565805,16566459,16567351,16568030,16569236,16573193,16574692,16575229,16576481,16577419,16579402,16580956,16581492,16582758,16592056,16592313,16604364,16604934	0.722222
testis_male_adult_54_years	chr7	100509414	100509451	100509422	+	High_confidence	16	17	46	1.708073	5.163967	chr7	100509277	100509733	LTR|ERVL-MaLR|MLT1F	-	chr7	100509716	100519926	AC069281.1|ENST00000392471.2	+	100509716,100510981,100516592,100519375,100519883	100509801,100511136,100516756,100519498,100519926	0.586957
testis_male_adult_54_years	chr2	131309363	131309364	131309363	+	RAMPAGE_only	8	8	10	0.371320	2.725481	chr2	131309189	131309556	DNA|TcMar-Tigger|Tigger4b	+	chr2	131281160	131315863	STRG.46606.20	+	131281160,131290028,131291826,131296842,131298222,131308893	131288948,131290226,131292050,131297013,131303104,131315863	0.900000
testis_male_adult_54_years	chr3	15403786	15403819	15403818	-	RAMPAGE_only	9	10	22	0.816904	4.095795	chr3	15403659	15404197	LTR|ERV1|MER41A	-	chr3	15399221	15406080	STRG.63469.1	-	15399221	15406080	0.863636
testis_male_adult_54_years	chr5	161059765	161059781	161059780	+	High_confidence	4	4	9	0.334188	3.000000	chr5	161057961	161060118	LTR|ERVL|ERVL-int	-	chr5	161059758	161097102	STRG.131254.1	+	161059758,161063526,161096723	161059997,161063673,161097102	0.555556
testis_male_adult_54_years	chr12	109389396	109389418	109389415	+	High_confidence	3	3	11	0.408452	3.277613	chr12	109388999	109389538	LTR|ERVL-MaLR|MLT1K	-	chr12	109388718	109448371	MYO1H|ENST00000431443.6	+	109388718,109393330,109396383,109397731,109401092,109403981,109405921,109406788,109407793,109409556,109409962,109410687,109411893,109415525,109420980,109424747,109425945,109427468,109432896,109435036,109436487,109438535,109439630,109440743,109441614,109442216,109443513,109444212,109444431,109445512,109447158	109388844,109393446,109396582,109397812,109401272,109404080,109406035,109406860,109407913,109409624,109410068,109410768,109411985,109415620,109421027,109424828,109426051,109427586,109433010,109435113,109436556,109438620,109439790,109440827,109441708,109442272,109443649,109444283,109444529,109445612,109448371	0.545455
testis_male_adult_54_years	chr14	45180862	45180863	45180862	+	High_confidence	19	19	23	0.854036	4.297079	chr14	45180734	45180902	LTR|ERVL-MaLR|MLT1F1	-	chr14	45180834	45187848	FANCM|ENST00000555013.1	+	45180834,45181429,45181636,45183773,45185216,45187780	45180889,45181524,45181705,45183902,45185373,45187848	0.565217
testis_male_adult_54_years	chr19	19427877	19427878	19427877	+	High_confidence	9	9	13	0.482716	3.188722	chr19	19427664	19427986	SINE|Alu|AluSc	-	chr19	19427526	19508927	GATAD2A|ENST00000404158.5	+	19427526,19427695,19436130,19465344,19492305,19492580,19494293,19495753,19496051,19498442,19501117,19501968,19502330,19505343	19427557,19427992,19436219,19465614,19492438,19492712,19494383,19495885,19496219,19498722,19501416,19502043,19502526,19508927	0.923077
testis_male_adult_54_years	chr7	101096041	101096042	101096041	+	RAMPAGE_only	6	6	8	0.297056	2.521641	chr7	101095922	101096214	SINE|Alu|AluSx	+	chr7	101085438	101097967	TRIM56|ENST00000306085.10	+	101085438,101087005,101087311	101085571,101087168,101097967	0.875000
testis_male_adult_54_years	chr16	30002629	30002675	30002629	+	RAMPAGE_only	5	6	19	0.705508	3.572431	chr16	30001976	30002726	LINE|L2|L2a	-	chr16	29996273	30005790	INO80E|ENST00000540562.1	+	29996273,29996546,29996807,30000757,30000928,30001211,30003435,30003649,30004554,30005220	29996391,29996617,29996860,30000836,30001040,30003013,30003526,30003714,30004657,30005790	0.894737
testis_male_adult_54_years	chr6	162698680	162698738	162698690	-	RAMPAGE_only	11	13	42	1.559544	4.075071	chr6	162698543	162698770	LINE|L1|L1MEa	-	chr6	162672526	162727764	STRG.155825.11	-	162672526,162727661	162725755,162727764	0.952381
testis_male_adult_54_years	chr3	69999571	69999605	69999593	+	High_confidence	20	21	78	2.896297	6.039387	chr3	69999500	70000000	LTR|ERV1|LTR1A2	+	chr3	69999593	70172924	SAMMSON|ENST00000641923.1	+	69999593,70012356,70013519,70065245,70071475,70172296	69999620,70012598,70013672,70065318,70071565,70172924	0.782051
testis_male_adult_54_years	chr19	46201469	46201484	46201483	+	RAMPAGE_only	4	5	9	0.334188	2.947703	chr19	46201414	46201636	LINE|L2|L2b	+	chr19	46197507	46203198	STRG.337772.8	+	46197507	46203198	0.888889
testis_male_adult_54_years	chr8	67093304	67093315	67093304	+	RAMPAGE_only	5	5	9	0.334188	2.947703	chr8	67092979	67093475	LTR|ERVL|LTR80B	+	chr8	67083847	67196614	CSPP1|NM_001291339.1	+	67083847,67086006,67093542,67095292,67103036,67105904,67111971,67113804,67115913,67118247,67118742,67131950,67137455,67154023,67158446,67158990,67161810,67163731,67164390,67172415,67175295,67177679,67179862,67190649,67193463,67195381	67084338,67086110,67093641,67095732,67103135,67105975,67112065,67113862,67116122,67118369,67118821,67132080,67137603,67154136,67158596,67159137,67161915,67163798,67164508,67172555,67175436,67177726,67179926,67190759,67193602,67196614	1.000000
testis_male_adult_54_years	chr9	33989279	33989305	33989286	-	High_confidence	3	3	13	0.482716	3.026987	chr9	33989199	33989499	SINE|Alu|AluY	-	chr9	33948373	33989043	UBAP2|ENST00000421278.2	-	33948373,33953284,33956078,33960825,33971650,33973182,33986759,33988972	33948587,33953474,33956146,33960878,33971754,33973237,33986837,33989043	0.846154
testis_male_adult_54_years	chr3	31533421	31533455	31533421	+	High_confidence	3	3	16	0.594112	3.373557	chr3	31533377	31533564	LINE|L1|L1M4b	-	chr3	31533624	31617005	STT3B|ENST00000462235.5	+	31533624,31576395,31579808,31596797,31600359,31615104,31616928	31533686,31576504,31580096,31596863,31600459,31615203,31617005	0.687500
testis_male_adult_54_years	chr5	38403540	38403548	38403540	+	High_confidence	45	45	112	4.158785	5.110623	chr5	38403268	38403777	DNA|TcMar-Tigger|Tigger7	-	chr5	38403540	38464388	EGFLAM|ENST00000336740.10	+	38403540,38406125,38406827,38407804,38409003,38412503,38418065,38424966,38427008,38431176,38435136,38438274,38448300,38451314,38458310,38462907,38463831	38403891,38406241,38407146,38407905,38409104,38412648,38418255,38425092,38427252,38431288,38435253,38438455,38448379,38451458,38458394,38463011,38464388	0.946429
testis_male_adult_54_years	chr3	84869576	84869577	84869576	-	High_confidence	9	9	12	0.445584	3.277613	chr3	84869336	84869609	SINE|Alu|AluY	-	chr3	84638404	84869575	LINC00971|NR_033860.1	-	84638404,84644212,84666399,84671583,84672620,84683608,84685639,84695364,84695709,84696157,84746044,84789637,84792167,84853941,84859814,84862722,84863215,84863705,84868597,84868902,84869277	84639212,84644286,84669856,84671703,84672905,84683678,84685780,84695515,84695882,84696341,84746337,84789772,84792291,84854015,84859923,84862821,84863436,84864005,84868668,84869024,84869575	0.750000
testis_male_adult_54_years	chr1	77532082	77532123	77532092	+	High_confidence	39	41	223	8.280438	6.451465	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.950673
testis_male_adult_54_years	chr1	32139753	32139761	32139753	+	RAMPAGE_only	3	3	12	0.445584	2.732159	chr1	32139701	32139948	LINE|L1|L1MC5	+	chr1	32142922	32162394	KPNA6|ENST00000469790.1	+	32142922,32154587,32156852,32157345,32158266,32159399,32160614,32161946,32162360	32143024,32154721,32156945,32157445,32158361,32159531,32160703,32162046,32162394	0.833333
testis_male_adult_54_years	chr17	47056838	47056839	47056838	-	RAMPAGE_only	102	103	109	4.047389	5.321593	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.871560
testis_male_adult_54_years	chr1	192986893	192986972	192986942	-	RAMPAGE_only	7	9	28	1.039696	4.209867	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192935795	192957713	AL390957.1|ENST00000647436.1	-	192935795,192957303	192935903,192957713	0.750000
testis_male_adult_54_years	chr2	202117041	202117074	202117045	-	High_confidence	116	117	583	21.647962	6.134371	chr2	202116673	202117219	LTR|ERVL-MaLR|MLT1F1	+	chr2	202113625	202117058	AC079354.1|ENST00000409819.1	-	202113625,202114928	202114588,202117058	0.989708
testis_male_adult_54_years	chr12	116759927	116759949	116759934	+	RAMPAGE_only	55	55	200	7.426402	4.644332	chr12	116756444	116760863	LINE|L1|L1PB1	-	chr12	116758640	116851762	STRG.261963.6	+	116758640,116766813,116779194,116833791,116835959,116836180,116849313	116760621,116766914,116779348,116833941,116836025,116836282,116851762	0.995000
testis_male_adult_54_years	chr2	107746940	107746941	107746940	-	High_confidence	36	38	47	1.745205	4.916291	chr2	107746623	107747902	LTR|ERV1|LTR12C	-	chr2	107746454	107747788	STRG.43289.1	-	107746454	107747788	0.829787
testis_male_adult_54_years	chrX	135893461	135893510	135893461	+	High_confidence	3	3	24	0.891168	4.349649	chrX	135893277	135893550	LTR|ERVL|LTR41	-	chrX	135893579	135913005	STRG.369177.1	+	135893579,135896242,135901558,135905251,135906023,135906410,135906925,135907312,135907700,135908088,135908476,135908863,135909638,135910029,135910414,135911191,135911578,135912320,135912797	135893781,135896329,135901691,135905392,135906164,135906551,135907066,135907453,135907841,135908229,135908617,135909004,135909779,135910170,135910555,135911332,135911953,135912414,135913005	0.750000
testis_male_adult_54_years	chr1	20685306	20685334	20685306	-	High_confidence	25	25	90	3.341881	6.166635	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.911111
testis_male_adult_54_years	chr11	72252789	72252792	72252789	+	RAMPAGE_only	4	5	11	0.408452	3.459432	chr11	72252591	72252896	LTR|ERVL-MaLR|THE1B	+	chr11	72302138	72302965	AP000593.3|ENST00000546065.1	+	72302138,72302611	72302362,72302965	0.636364
testis_male_adult_54_years	chr12	10363964	10363980	10363964	+	High_confidence	7	7	16	0.594112	3.640224	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.562500
testis_male_adult_54_years	chr1	216194052	216194057	216194052	+	High_confidence	5	5	15	0.556980	3.906891	chr1	216193884	216194131	LTR|ERVL|LTR16	+	chr1	216194050	216204366	AC138024.1|ENST00000420867.1	+	216194050,216195742,216204029	216194229,216195925,216204366	0.733333
testis_male_adult_54_years	chr1	55843373	55843374	55843373	+	High_confidence	16	16	22	0.816904	4.106603	chr1	55842854	55844924	LTR|ERVL|ERV3-16A3_I-int	-	chr1	55843330	55844443	STRG.7205.4	+	55843330	55844443	0.500000
testis_male_adult_54_years	chr4	129771599	129771629	129771628	+	High_confidence	23	23	93	3.453277	5.857610	chr4	129771157	129771679	LTR|ERVL-MaLR|MLT1F	-	chr4	129771658	129955368	LINC02465|ENST00000513875.5	+	129771658,129780009,129802991,129807003,129812001,129812661,129813673,129825339,129834209,129837370,129862567,129900537,129908633,129949076,129953273,129954377,129955251	129771687,129780099,129803115,129807148,129812065,129812760,129813785,129825452,129834324,129837425,129862768,129900654,129908703,129949137,129953339,129954576,129955368	0.537634
testis_male_adult_54_years	chr9	68834391	68834393	68834392	-	High_confidence	125	146	182	6.758026	6.533109	chr9	68834256	68834532	LINE|L2|L2c	+	chr9	68833230	68834380	STRG.203067.2	-	68833230	68834380	0.637363
testis_male_adult_54_years	chr3	131027619	131027645	131027619	-	High_confidence	23	23	42	1.559544	4.784184	chr3	131027520	131027791	LINE|L2|L2a	-	chr3	131025157	131027649	ASTE1|ENST00000505545.5	-	131025157,131025473,131027247,131027470	131025331,131025594,131027324,131027649	0.571429
testis_male_adult_54_years	chr4	118194981	118195010	118195009	-	High_confidence	4	4	10	0.371320	2.947703	chr4	118194898	118195234	LINE|L1|L1MA2	-	chr4	118193404	118194751	FKBP4P1|ENST00000507284.2	-	118193404	118194751	0.700000
testis_male_adult_54_years	chr10	9878169	9878179	9878178	-	High_confidence	5	5	10	0.371320	2.921928	chr10	9877868	9878570	LTR|ERV1|MER50B	+	chr10	9785917	9878093	STRG.213766.2	-	9785917,9787401,9790252,9877747	9786265,9787483,9790788,9878093	1.000000
testis_male_adult_54_years	chr19	56540166	56540191	56540166	+	RAMPAGE_only	9	9	29	1.076828	4.487123	chr19	56540041	56540354	LINE|L2|L2c	-	chr19	56539129	56548977	ZFP28|ENST00000589836.1	+	56539129,56539624,56547507,56547806,56548377,56548957	56539226,56539716,56547634,56547902,56548478,56548977	0.655172
testis_male_adult_54_years	chr13	20660535	20660537	20660536	+	RAMPAGE_only	6	9	11	0.408452	3.121928	chr13	20660505	20660660	LINE|L2|L2a	-	chr13	20605055	20671039	STRG.264680.5	+	20605055,20615792,20625749,20631015,20638331,20641289,20643454,20644842,20653875,20656364,20670972	20605105,20615879,20625849,20631102,20638518,20641398,20643605,20644958,20653928,20663604,20671039	0.909091
testis_male_adult_54_years	chr19	56365906	56365928	56365916	-	High_confidence	3	3	14	0.519848	3.521641	chr19	56365534	56366197	LINE|L1|L1MCa	+	chr19	56354492	56365949	AC006116.9|ENST00000591630.1	-	56354492,56363234,56364955,56365715	56354641,56363398,56365057,56365949	1.000000
testis_male_adult_54_years	chr15	51077817	51077844	51077843	+	High_confidence	46	51	109	4.047389	5.333628	chr15	51077571	51078015	LTR|ERV1|MER61B	+	chr15	51077786	51118859	STRG.294515.1	+	51077786	51118859	1.000000
testis_male_adult_54_years	chr4	177445009	177445149	177445113	+	High_confidence	13	13	109	4.047389	6.050803	chr4	177444910	177445732	LTR|ERV1|LTR1A2	+	chr4	177444978	177677126	AC078881.1|ENST00000507023.1	+	177444978,177451474,177593471,177596460,177623658,177675836	177445443,177451590,177593546,177596531,177623802,177677126	0.559633
testis_male_adult_54_years	chr6	112097833	112097870	112097833	+	High_confidence	159	164	305	11.325263	6.051161	chr6	112097799	112097867	LINE|L2|L2a	-	chr6	112097582	112107319	STRG.149567.6	+	112097582,112099269,112100669	112098215,112099408,112107319	0.973770
testis_male_adult_54_years	chr21	33035391	33035424	33035391	+	High_confidence	4	4	16	0.594112	3.773557	chr21	33035390	33035528	SINE|MIR|MIR	+	chr21	33035423	33036689	STRG.351243.1	+	33035423,33036449	33035627,33036689	0.687500
testis_male_adult_54_years	chr9	108273052	108273070	108273069	-	High_confidence	4	4	14	0.519848	3.700440	chr9	108272755	108273149	LINE|CR1|L3	-	chr9	108270767	108273057	STRG.208590.2	-	108270767,108272908	108271998,108273057	0.857143
testis_male_adult_54_years	chr1	19298033	19298059	19298033	+	High_confidence	3	3	11	0.408452	3.277613	chr1	19297940	19298445	LTR|ERVL|MLT2A2	+	chr1	19297539	19308106	STRG.2296.1	+	19297539,19305210	19298412,19308106	1.000000
testis_male_adult_54_years	chr9	74275383	74275390	74275383	-	High_confidence	21	21	62	2.302185	4.286796	chr9	74275080	74276495	LTR|ERV1|LTR12C	-	chr9	74274506	74274843	STRG.203935.1	-	74274506	74274843	0.709677
testis_male_adult_54_years	chr19	44192227	44192244	44192243	+	RAMPAGE_only	5	5	9	0.334188	3.169925	chr19	44190634	44192284	LTR|ERV1|MER65-int	-	chr19	44190954	44192840	STRG.337205.1	+	44190954	44192840	0.888889
testis_male_adult_54_years	chr12	64293377	64293378	64293377	-	High_confidence	5	5	7	0.259924	2.521641	chr12	64287349	64293377	LINE|L1|L1PA2	-	chr12	64266982	64293383	C12orf56|ENST00000536975.5	-	64266982,64270535,64274900,64275297,64277679,64284663,64285953,64293280	64267288,64270714,64274975,64275372,64277803,64284753,64286060,64293383	0.857143
testis_male_adult_54_years	chr8	92765584	92765612	92765593	-	High_confidence	86	86	254	9.431531	6.727958	chr8	92765116	92769888	LTR|ERVL|HERVL-int	-	chr8	92699749	92765578	FLJ46284|ENST00000521148.5	-	92699749,92718398,92765442	92699989,92718518,92765578	0.566929
testis_male_adult_54_years	chr2	239224329	239224362	239224349	-	RAMPAGE_only	3	3	19	0.705508	4.142664	chr2	239223959	239224428	LINE|L2|L2a	+	chr2	239186487	239236669	HDAC4|ENST00000496347.1	-	239186487,239189832,239236592	239187160,239190077,239236669	0.578947
testis_male_adult_54_years	chr9	6807447	6807461	6807450	+	RAMPAGE_only	4	6	18	0.668376	3.852169	chr9	6806926	6808710	Retroposon|SVA|SVA_F	+	chr9	6805616	7169884	STRG.197119.4	+	6805616,6814630,6849506,6880011,6887959,6893094,6980924,6984165,6986343,6990415,7011697,7013787,7015852,7046861,7049091,7103684,7105401,7128065,7165237,7169797	6805774,6814745,6849700,6880061,6888063,6893232,6981118,6984404,6986666,6990524,7011879,7014001,7015929,7046917,7049200,7103870,7105500,7128236,7165357,7169884	0.722222
testis_male_adult_54_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	12	13	13	0.482716	3.188722	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.923077
testis_male_adult_54_years	chr1	102853759	102853833	102853789	-	High_confidence	6	6	60	2.227921	4.946014	chr1	102853603	102855052	LTR|ERV1|LTR12C	+	chr1	102763321	102853842	AC099567.1|ENST00000414418.1	-	102763321,102766556,102767522,102767774,102772957,102799803,102853591	102763505,102766656,102767630,102767802,102773092,102799928,102853842	0.683333
testis_male_adult_54_years	chr2	95824738	95825073	95824937	-	RAMPAGE_only	26	29	170	6.312442	6.023715	chr2	95824349	95826979	LINE|L1|L1PA10	-	chr2	95807051	95826981	LINC00342|NR_103734.1	-	95807051,95814049,95824200	95807302,95814145,95826981	0.982353
testis_male_adult_54_years	chr1	145839475	145839494	145839483	+	High_confidence	37	37	104	3.861729	5.248666	chr1	145839460	145839751	SINE|Alu|AluJb	+	chr1	145839514	145839991	POLR3C|ENST00000479819.1	+	145839514,145839889	145839784,145839991	0.769231
testis_male_adult_54_years	chr1	163346527	163346549	163346548	+	RAMPAGE_only	5	5	14	0.519848	3.700440	chr1	163346572	163346850	SINE|Alu|AluJr	+	chr1	163321953	163355764	NUF2|ENST00000271452.7	+	163321953,163326031,163327487,163328227,163328845,163336750,163338019,163339380,163340363,163343732,163345677,163347762,163348944,163355334	163322212,163326174,163327562,163328304,163328907,163336848,163338093,163339477,163340426,163343870,163345818,163347938,163349080,163355764	0.642857
testis_male_adult_54_years	chr14	77076158	77076189	77076188	-	RAMPAGE_only	4	4	15	0.556980	3.664498	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77073906	77081187	STRG.286583.1	-	77073906,77081140	77074598,77081187	0.533333
testis_male_adult_54_years	chr5	120882507	120882582	120882581	-	High_confidence	40	45	147	5.458406	6.455563	chr5	120882298	120882779	LTR|ERVL|MER70A	-	chr5	120871345	120882679	STRG.126321.1	-	120871345	120882679	0.945578
testis_male_adult_54_years	chr12	79455514	79455560	79455536	-	High_confidence	5	9	23	0.854036	3.969002	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.826087
testis_male_adult_54_years	chr6	133209582	133209583	133209582	-	High_confidence	10	10	10	0.371320	2.921928	chr6	133209371	133210065	LTR|ERV1|LTR12F	-	chr6	133208528	133209462	STRG.152417.1	-	133208528,133209255	133208663,133209462	0.500000
testis_male_adult_54_years	chr7	126806452	126806455	126806454	-	High_confidence	41	56	77	2.859165	4.487475	chr7	126806039	126807055	LTR|ERV1|LTR12D	-	chr7	126532991	126806434	STRG.173260.2	-	126532991,126609361,126769864,126805294	126533887,126609498,126770065,126806434	1.000000
testis_male_adult_54_years	chr12	45610599	45610607	45610599	-	High_confidence	6	6	13	0.482716	3.392747	chr12	45610596	45610900	SINE|Alu|AluSx	+	chr12	45481870	45610590	AC079950.1|ENST00000551229.2	-	45481870,45518317,45519053,45600663,45610538	45482071,45518411,45519153,45600784,45610590	0.538462
testis_male_adult_54_years	chr3	113800922	113800939	113800938	+	High_confidence	206	211	343	12.736280	7.186474	chr3	113800872	113801154	SINE|Alu|AluJr	+	chr3	113801138	113809469	ATP6V1A|ENST00000461496.1	+	113801138,113802757,113803301,113803582,113805353,113809334	113801167,113802825,113803344,113803677,113805525,113809469	0.606414
testis_male_adult_54_years	chr1	19984014	19984015	19984014	-	High_confidence	99	100	103	3.824597	5.252036	chr1	19983700	19985016	LTR|ERV1|LTR12C	-	chr1	19983270	19984013	STRG.2463.1	-	19983270	19984013	0.951456
testis_male_adult_54_years	chr20	1630948	1630972	1630971	+	High_confidence	21	21	54	2.005129	4.743236	chr20	1630951	1631023	LINE|CR1|L3	-	chr20	1631022	1631580	STRG.340673.1	+	1631022	1631580	0.907407
testis_male_adult_54_years	chr1	167357448	167357474	167357448	+	High_confidence	6	6	30	1.113960	4.840224	chr1	167357390	167357678	SINE|Alu|AluJb	-	chr1	167357459	167387255	POU2F1|ENST00000470928.3	+	167357459,167365466,167370160,167371916,167374107,167376028,167376552,167383856,167387180	167357521,167365567,167370214,167372036,167374296,167376155,167376587,167383951,167387255	0.700000
testis_male_adult_54_years	chr6	52579438	52579439	52579438	+	RAMPAGE_only	12	12	12	0.445584	3.418296	chr6	52579191	52579722	LTR|ERVL-MaLR|MLT1F1	+	chr6	52578365	52583559	TRAM2-AS1|ENST00000605910.1	+	52578365,52578501,52579374,52582862	52578393,52578594,52579609,52583559	1.000000
testis_male_adult_54_years	chr12	6716986	6716987	6716986	+	High_confidence	51	51	53	1.967997	4.387606	chr12	6715852	6717297	LTR|ERV1|LTR12C	+	chr12	6716997	6718477	STRG.247365.1	+	6716997	6718477	0.943396
testis_male_adult_54_years	chr2	229939160	229939187	229939160	+	RAMPAGE_only	3	3	17	0.631244	4.000000	chr2	229939047	229939217	SINE|Alu|AluSp	-	chr2	229952349	229997777	STRG.59214.4	+	229952349,229976240,229996750	229952921,229976349,229997777	0.588235
testis_male_adult_54_years	chr6	31400605	31400620	31400605	-	High_confidence	4	4	12	0.445584	2.845351	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31394320	31400607	STRG.139855.2	-	31394320,31398058	31395217,31400607	0.916667
testis_male_adult_54_years	chr11	120026752	120026796	120026752	+	High_confidence	154	157	232	8.614627	5.810389	chr11	120025715	120027154	LTR|ERV1|LTR12C	+	chr11	120026756	120028782	STRG.243147.1	+	120026756,120027418	120027202,120028782	0.969828
testis_male_adult_54_years	chr1	39779978	39780000	39779978	+	High_confidence	127	131	247	9.171607	6.074024	chr1	39779789	39780252	LTR|ERVL-MaLR|MLT1F1	-	chr1	39779984	39781418	STRG.5196.2	+	39779984	39781418	0.995951
testis_male_adult_54_years	chr12	42388539	42388557	42388539	+	RAMPAGE_only	17	17	51	1.893733	5.118216	chr12	42387718	42388711	LTR|ERVK|LTR5B	+	chr12	42326177	42448618	PPHLN1|ENST00000432191.6	+	42326177,42335882,42355160,42374862,42384939,42387455,42393569,42398853,42441314,42442640,42445972,42446591	42326229,42335974,42355222,42375074,42384996,42387535,42393689,42398994,42441429,42442741,42446290,42448618	0.784314
testis_male_adult_54_years	chr2	227534916	227534933	227534932	+	RAMPAGE_only	20	23	45	1.670940	4.836080	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.911111
testis_male_adult_54_years	chr7	8227671	8227672	8227671	-	RAMPAGE_only	4	5	7	0.259924	2.584963	chr7	8227605	8227885	SINE|Alu|AluJr4	-	chr7	8113922	8235926	ICA1|ENST00000422063.6	-	8113922,8127872,8138839,8138984,8141764,8141968,8143874,8157115,8158526,8218304,8221274,8228600,8232589,8235909	8114044,8128142,8138881,8139047,8141817,8142055,8143972,8157214,8158652,8218503,8221398,8228673,8232755,8235926	0.857143
testis_male_adult_54_years	chr1	24799304	24799309	24799304	+	RAMPAGE_only	3	3	8	0.297056	2.807355	chr1	24798626	24800040	Retroposon|SVA|SVA_F	+	chr1	24745381	24839907	CLIC4|ENST00000497755.1	+	24745381,24793176,24797741,24814093,24827009,24839859	24745625,24793213,24797851,24814219,24827116,24839907	0.500000
testis_male_adult_54_years	chr8	75324596	75324620	75324596	-	High_confidence	4	4	13	0.482716	3.238901	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223702	75324741	CASC9|ENST00000522183.1	-	75223702,75324564	75224358,75324741	0.692308
testis_male_adult_54_years	chr5	66549621	66549660	66549659	+	High_confidence	12	13	34	1.262488	3.968139	chr5	66549516	66550029	LTR|ERVL-MaLR|MLT1F2	+	chr5	66549667	66549957	STRG.118964.1	+	66549667	66549957	0.911765
testis_male_adult_54_years	chr13	74552842	74552850	74552842	+	High_confidence	314	315	558	20.719662	7.723671	chr13	74552819	74552976	LTR|ERVL-MaLR|MLT1J-int	+	chr13	74552842	74557120	LINC00347|NR_034025.1	+	74552842,74554656,74555224	74552903,74554760,74557120	0.967742
testis_male_adult_54_years	chr12	122592814	122592871	122592814	+	High_confidence	116	116	169	6.275310	5.390860	chr12	122591840	122593220	LTR|ERV1|LTR12C	+	chr12	122592817	122602644	KNTC1|ENST00000535186.1	+	122592817,122594275,122602568	122593184,122594385,122602644	0.781065
testis_male_adult_54_years	chr2	130047248	130047304	130047303	-	RAMPAGE_only	3	3	14	0.519848	3.664498	chr2	130047244	130047376	SINE|MIR|MIR	+	chr2	130025997	130051131	FAR2P1|NR_026758.2	-	130025997,130028308,130034309,130034710,130035133,130039133,130040389,130045356,130047181,130048425,130049067,130049815	130027537,130028483,130034377,130034831,130035262,130039178,130040560,130045580,130047379,130048619,130049412,130051131	0.500000
testis_male_adult_54_years	chr12	58097968	58098016	58098015	-	High_confidence	6	6	20	0.742640	4.221928	chr12	58097745	58098282	LTR|ERVL|MER21C	-	chr12	58094913	58098013	AC090643.1|ENST00000623600.1	-	58094913	58098013	0.600000
testis_male_adult_54_years	chr14	19399961	19399990	19399961	-	RAMPAGE_only	3	3	10	0.371320	3.121928	chr14	19399503	19400833	LINE|L1|L1PA12	-	chr14	19362467	19434341	STRG.277180.13	-	19362467,19381176,19393649,19404616,19413353,19414561,19416287,19421623,19424164,19425605,19425807,19428541,19428874,19433768	19376011,19383186,19403109,19404735,19413520,19414606,19416358,19421694,19424302,19425712,19426988,19428715,19428989,19434341	1.000000
testis_male_adult_54_years	chr5	31530809	31530829	31530809	-	RAMPAGE_only	2	2	7	0.259924	2.521641	chr5	31530667	31530954	LINE|L2|L2c	+	chr5	31400496	31532061	DROSHA|ENST00000511367.6	-	31400496,31405676,31406852,31409055,31409249,31410745,31421271,31422786,31424426,31429474,31431575,31435764,31437238,31448546,31449280,31451532,31464235,31466181,31467938,31472062,31483553,31484880,31486490,31493206,31495285,31504554,31508620,31511034,31514987,31515453,31521122,31526078,31529039,31530797,31531989	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31422944,31424471,31429545,31431678,31435864,31437298,31448607,31449419,31451640,31464343,31466281,31468063,31472232,31483628,31484962,31486562,31493293,31495372,31504635,31508775,31511176,31515219,31515564,31521215,31526912,31529105,31530924,31532061	1.000000
testis_male_adult_54_years	chr9	137734192	137734211	137734210	+	RAMPAGE_only	5	5	12	0.445584	3.418296	chr9	137733676	137735605	LINE|L1|L1MB3	+	chr9	137644900	137762769	STRG.212770.8	+	137644900,137710966,137716625,137728348,137743901,137752330,137754170,137757879,137762674	137669191,137711030,137717182,137743528,137744090,137752408,137754291,137758011,137762769	1.000000
testis_male_adult_54_years	chr12	31117482	31117485	31117482	-	High_confidence	4	4	8	0.297056	2.750000	chr12	31117416	31117564	LTR|ERV1|HERVE-int	+	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.750000
testis_male_adult_54_years	chr11	23883022	23883023	23883022	-	High_confidence	71	73	76	2.822033	5.197031	chr11	23882599	23883997	LTR|ERV1|LTR12C	-	chr11	23882389	23883028	STRG.231681.1	-	23882389	23883028	0.973684
testis_male_adult_54_years	chr2	29321738	29321739	29321738	-	High_confidence	27	27	37	1.373884	3.908453	chr2	29321461	29321796	LTR|ERVL-MaLR|MLT1I	+	chr2	29253759	29321792	STRG.33143.1	-	29253759,29275098,29275401,29296887,29318303,29320750,29321409	29253814,29275227,29275496,29297057,29318404,29320882,29321792	0.891892
testis_male_adult_54_years	chr15	95358959	95358979	95358959	+	High_confidence	2	2	7	0.259924	2.584963	chr15	95358736	95359187	LTR|ERV1|LTR12F	+	chr15	95358620	95359283	STRG.300470.1	+	95358620	95359283	0.714286
testis_male_adult_54_years	chr7	112638243	112638248	112638247	+	RAMPAGE_only	7	8	17	0.631244	3.852169	chr7	112638159	112638294	LINE|L2|L2b	+	chr7	112622380	112708072	LOC101928012|NR_110158.1	+	112622380,112632557,112635278,112635837,112640161,112699329,112701366,112707736	112622619,112632665,112635366,112635922,112640218,112699522,112701437,112708072	0.529412
testis_male_adult_54_years	chr6	52201512	52201528	52201527	+	High_confidence	3	3	7	0.259924	2.584963	chr6	52200778	52201785	LINE|L1|HAL1	+	chr6	52201517	52208098	STRG.142317.1	+	52201517,52207981	52201879,52208098	0.857143
testis_male_adult_54_years	chr1	51403425	51403433	51403425	-	RAMPAGE_only	8	10	26	0.965432	3.105389	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.923077
testis_male_adult_54_years	chr4	137943021	137943022	137943021	+	High_confidence	439	442	542	20.125550	5.732566	chr4	137941888	137943437	LTR|ERV1|LTR12C	+	chr4	137942830	137954006	STRG.103893.1	+	137942830,137950180,137952319	137943401,137950250,137954006	0.909594
testis_male_adult_54_years	chr9	3734565	3734566	3734565	+	High_confidence	83	83	102	3.787465	5.454454	chr9	3733630	3734981	LTR|ERV1|LTR12C	+	chr9	3734553	3735505	STRG.196496.2	+	3734553	3735505	0.950980
testis_male_adult_54_years	chr3	10570379	10570405	10570397	-	High_confidence	3	3	11	0.408452	3.321928	chr3	10570312	10570450	DNA|hAT-Tip100|MamTip2	-	chr3	10566254	10570375	ATP2B2-IT1|ENST00000440152.1	-	10566254,10570120	10566471,10570375	0.545455
testis_male_adult_54_years	chr3	2892219	2892237	2892236	+	High_confidence	76	76	146	5.421274	5.435134	chr3	2892143	2892349	DNA|hAT-Charlie|MER5A	-	chr3	2892214	3056355	CNTN4|ENST00000397459.6	+	2892214,2900684,2902875,2925628,2988344,3026101,3030854,3034631,3037178,3038932,3040036,3042309,3042976,3043591,3053806,3056119	2892260,2900821,2903005,2925779,2988472,3026277,3030975,3034790,3037328,3039003,3040271,3042422,3043163,3043704,3053975,3056355	0.842466
testis_male_adult_54_years	chr4	41554916	41554971	41554970	-	High_confidence	5	5	17	0.631244	3.852169	chr4	41554813	41554928	LINE|L2|L2a	-	chr4	41554528	41554928	STRG.93317.1	-	41554528	41554928	0.647059
testis_male_adult_54_years	chr4	109212334	109212374	109212334	-	RAMPAGE_only	62	63	331	12.290696	6.724874	chr4	109212119	109212591	LTR|ERVL-MaLR|MLT1G3	-	chr4	108823875	109302367	COL25A1|NM_001256074.1	-	108823875,108827134,108832379,108834354,108838097,108841694,108844518,108845188,108846138,108848758,108852235,108859655,108860926,108863318,108869087,108884177,108889220,108889700,108896666,108899153,108901118,108918171,108920577,108937807,108940538,108942208,108974366,108974532,109010357,109048167,109050134,109300582,109301722	108824227,108827188,108832433,108834390,108838178,108841721,108844569,108845251,108846219,108848803,108852280,108859733,108860971,108863387,108869150,108884222,108889256,108889733,108896711,108899180,108901172,108918216,108920604,108937843,108940646,108942268,108974393,108974559,109010375,109048175,109050179,109300652,109302367	0.755287
testis_male_adult_54_years	chr4	55486455	55486477	55486476	-	RAMPAGE_only	4	4	12	0.445584	2.845351	chr4	55486051	55487998	LINE|L1|HAL1	-	chr4	55427902	55510027	CLOCK|ENST00000309964.8	-	55427902,55438281,55442431,55443686,55444632,55448778,55449395,55450090,55453053,55453676,55455896,55456217,55458891,55459147,55463684,55470716,55475962,55478814,55479639,55482738,55489373,55509911	55435594,55438537,55442634,55443896,55444785,55448868,55449496,55450232,55453129,55453824,55456003,55456300,55459010,55459261,55463805,55470806,55476054,55478963,55479699,55482828,55489465,55510027	0.916667
testis_male_adult_54_years	chr19	51886821	51886881	51886880	-	RAMPAGE_only	13	14	44	1.633808	4.948896	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51878400	51887889	ZNF577|ENST00000638538.1	-	51878400,51880322,51880678,51886115,51886820,51887831	51878515,51880401,51880877,51886145,51886912,51887889	0.636364
testis_male_adult_54_years	chr4	125229222	125229223	125229222	-	High_confidence	38	40	40	1.485280	4.145972	chr4	125228816	125230153	LTR|ERV1|LTR12C	-	chr4	125228827	125229272	STRG.102001.1	-	125228827	125229272	0.750000
testis_male_adult_54_years	chr18	10790778	10790798	10790778	-	High_confidence	4	4	20	0.742640	3.932138	chr18	10790705	10791003	SINE|Alu|AluY	-	chr18	10773530	10791650	PIEZO2|ENST00000583325.1	-	10773530,10784783,10787035,10789078,10791200,10791462	10773629,10784957,10787184,10789365,10791324,10791650	0.950000
testis_male_adult_54_years	chr3	9973632	9973639	9973638	-	RAMPAGE_only	7	7	14	0.519848	2.653544	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.857143
testis_male_adult_54_years	chr19	58312326	58312345	58312344	+	RAMPAGE_only	8	8	17	0.631244	3.750000	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.647059
testis_male_adult_54_years	chr2	219254720	219254751	219254720	-	High_confidence	7	16	44	1.633808	4.862507	chr2	219254658	219254827	SINE|MIR|MIRb	+	chr2	219249710	219254608	TUBA4A|NM_001278552.1	-	219249710,219251564,219252007,219254094	219251323,219251713,219252230,219254608	0.977273
testis_male_adult_54_years	chr11	62600186	62600196	62600195	-	High_confidence	5	5	11	0.408452	3.321928	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62593214	62599317	MTA2|ENST00000524902.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62598521,62599217	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598390,62598639,62599317	0.636364
testis_male_adult_54_years	chr3	27834074	27834089	27834074	-	High_confidence	34	34	100	3.713201	5.469334	chr3	27834017	27834298	LTR|ERVL-MaLR|MLT1G1	-	chr3	27830885	27834136	LOC100996624|NR_132438.1	-	27830885,27833998	27833582,27834136	0.990000
testis_male_adult_54_years	chr12	121209932	121209953	121209932	-	High_confidence	19	19	42	1.559544	4.916127	chr12	121209780	121209899	SINE|Alu|AluJr	-	chr12	121162158	121210265	STRG.262520.1	-	121162158,121203497,121209848	121162417,121203600,121210265	0.952381
testis_male_adult_54_years	chr7	118223696	118223722	118223696	+	High_confidence	6	6	17	0.631244	3.702820	chr7	118222174	118224425	LINE|L2|L2a	-	chr7	118224657	118242731	ANKRD7|NM_019644.3	+	118224657,118234430,118234700,118236040,118236789,118239908,118242348	118225009,118234545,118234874,118236147,118236926,118239998,118242731	0.647059
testis_male_adult_54_years	chr15	51303035	51303087	51303080	-	High_confidence	61	64	467	17.340649	6.425885	chr15	51303071	51303342	DNA|hAT-Tip100|MamTip2	-	chr15	51268027	51303099	STRG.294605.2	-	51268027	51303099	1.000000
testis_male_adult_54_years	chr2	100603726	100603743	100603740	+	High_confidence	38	38	102	3.787465	5.780477	chr2	100603424	100603780	LTR|ERVL-MaLR|MLT1G	-	chr2	100603377	100604779	STRG.42353.1	+	100603377	100604779	0.901961
testis_male_adult_54_years	chr4	106525704	106525750	106525731	+	High_confidence	4	4	26	0.965432	4.303509	chr4	106524487	106525908	LTR|ERV1|LTR12C	-	chr4	106525437	106641982	STRG.99728.1	+	106525437,106627033,106641947	106525935,106627133,106641982	0.730769
testis_male_adult_54_years	chr11	63494827	63494855	63494840	+	High_confidence	13	13	57	2.116525	4.281692	chr11	63494503	63494876	LINE|L1|L1ME3F	-	chr11	63495067	63500609	STRG.235590.1	+	63495067,63500401	63495609,63500609	1.000000
testis_male_adult_54_years	chr5	66721665	66721669	66721668	+	RAMPAGE_only	30	31	54	2.005129	4.903514	chr5	66720805	66722655	LINE|L2|L2a	+	chr5	66738030	66788705	MAST4|ENST00000478569.1	+	66738030,66759708,66783334,66788669	66738257,66759862,66783384,66788705	0.592593
testis_male_adult_54_years	chr8	75665831	75665847	75665833	+	High_confidence	31	50	132	4.901425	5.509465	chr8	75664381	75666029	LTR|ERV1|LTR12C	-	chr8	75665356	75775612	STRG.186802.1	+	75665356,75775445	75666113,75775612	0.651515
testis_male_adult_54_years	chr1	160947472	160947473	160947472	-	RAMPAGE_only	4	4	7	0.259924	2.584963	chr1	160946903	160947898	LTR|ERVK|LTR5B	-	chr1	160945024	160954799	ITLN2|ENST00000368029.3	-	160945024,160947928,160950045,160950552,160951042,160952619,160954386,160954726	160945292,160948032,160950166,160950711,160951290,160952733,160954450,160954799	0.714286
testis_male_adult_54_years	chr3	180870208	180870223	180870222	-	High_confidence	6	6	10	0.371320	3.121928	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180707588	180870178	LOC101928882|NR_109986.1	-	180707588,180711192,180711309,180725514,180733478,180734486,180737492,180747879,180748245,180751347,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180733682,180734606,180737814,180748043,180748319,180751410,180782124,180810470,180847624,180870178	0.700000
testis_male_adult_54_years	chr19	39168295	39168296	39168295	+	High_confidence	5	5	8	0.297056	2.521641	chr19	39168210	39168339	SINE|MIR|MIR3	-	chr19	39168610	39179406	PAK4|ENST00000360442.7	+	39168610,39169531,39172917,39173575,39174930,39175311,39176589,39177674,39178423	39168840,39169757,39173376,39174010,39175064,39175438,39176715,39177809,39179406	0.625000
testis_male_adult_54_years	chr19	14981648	14981670	14981648	-	RAMPAGE_only	3	3	7	0.259924	2.521641	chr19	14981578	14981662	LINE|L2|L2b	-	chr19	14961309	14980298	SLC1A6|ENST00000544886.6	-	14961309,14964318,14968302,14971736,14972705,14979512	14962345,14964361,14968507,14971874,14972917,14980298	0.857143
testis_male_adult_54_years	chr7	45940414	45940452	45940451	+	High_confidence	25	25	89	3.304749	5.424443	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45940434	45982064	STRG.163516.1	+	45940434,45977518,45978349,45979908	45940880,45977678,45978468,45982064	0.943820
testis_male_adult_54_years	chr16	28534782	28534794	28534793	+	RAMPAGE_only	3	3	7	0.259924	2.584963	chr16	28534558	28534981	LTR|ERVL-MaLR|MLT1J	+	chr16	28553914	28585403	SGF29|ENST00000564682.5	+	28553914,28581054,28584912	28554097,28581144,28585403	0.571429
testis_male_adult_54_years	chr8	140262699	140262713	140262712	-	High_confidence	14	14	56	2.079393	5.040362	chr8	140262666	140262789	LINE|L2|L2c	+	chr8	140215909	140262730	TRAPPC9|ENST00000518839.1	-	140215909,140221458,140252776,140262606	140216054,140221583,140252929,140262730	0.642857
testis_male_adult_54_years	chr1	31644023	31644059	31644058	+	High_confidence	3	3	8	0.297056	3.000000	chr1	31643930	31644157	SINE|MIR|MIRb	-	chr1	31644048	31659746	AC114488.2|ENST00000623791.3	+	31644048,31651848,31655951,31656896,31659697	31644296,31651988,31656044,31657061,31659746	0.500000
testis_male_adult_54_years	chr5	133089637	133089678	133089677	+	RAMPAGE_only	139	148	269	9.988511	6.781570	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.970260
testis_male_adult_54_years	chr20	53142291	53142324	53142291	-	High_confidence	3	3	14	0.519848	3.664498	chr20	53142097	53142498	LTR|ERVL-MaLR|MLT1K	-	chr20	53141618	53142329	STRG.346511.1	-	53141618	53142329	0.642857
testis_male_adult_54_years	chr11	65427837	65428513	65428512	+	RAMPAGE_only	50	52	931	34.569902	7.076196	chr11	65428531	65428593	DNA|hAT-Tip100|MamRep4096	+	chr11	65425550	65445540	STRG.235831.6	+	65425550,65437228	65437184,65445540	0.997852
testis_male_adult_54_years	chr10	123560332	123560357	123560338	+	High_confidence	66	68	310	11.510923	6.678337	chr10	123560156	123560713	LINE|L2|L2a	-	chr10	123560349	123562226	STRG.227345.5	+	123560349,123561637	123561541,123562226	0.977419
testis_male_adult_54_years	chr15	78245687	78245688	78245687	-	High_confidence	175	177	186	6.906554	5.319347	chr15	78245271	78246702	LTR|ERV1|LTR12C	-	chr15	78225735	78245688	STRG.297681.6	-	78225735,78234370,78245268	78226605,78240077,78245688	0.946237
testis_male_adult_54_years	chr2	25780278	25780325	25780278	-	High_confidence	14	14	56	2.079393	5.440362	chr2	25780217	25780265	SINE|Alu|AluJo	-	chr2	25741924	25780309	ASXL2|ENST00000404843.5	-	25741924,25743827,25749695,25753533,25756017,25759481,25767582,25768741,25771439,25780248	25743056,25744476,25750413,25753639,25756114,25759645,25767726,25768868,25771540,25780309	0.946429
testis_male_adult_54_years	chr16	4843413	4843414	4843413	-	RAMPAGE_only	9	9	11	0.408452	3.095795	chr16	4843159	4843454	SINE|Alu|AluSz6	-	chr16	4803202	4846210	GLYR1|ENST00000589389.5	-	4803202,4811169,4811622,4812085,4813736,4814536,4817597,4821379,4822874,4823820,4831978,4832773,4845073,4846173	4805310,4811294,4811802,4812248,4813838,4814647,4817697,4821453,4822931,4823907,4832221,4832912,4845153,4846210	0.909091
testis_male_adult_54_years	chr3	150698792	150698818	150698792	-	RAMPAGE_only	3	3	7	0.259924	2.807355	chr3	150698571	150698756	SINE|MIR|MIRb	-	chr3	150659884	150703951	ERICH6|ENST00000295910.10	-	150659884,150666786,150669295,150673955,150678408,150680467,150680772,150682217,150685741,150685965,150686297,150698790,150702120,150703495	150660155,150667015,150669451,150674041,150678554,150680538,150680930,150682316,150685858,150686021,150686354,150698882,150702178,150703951	1.000000
testis_male_adult_54_years	chr15	98103717	98103718	98103717	-	High_confidence	449	449	562	20.868190	6.328766	chr15	98103301	98104789	LTR|ERV1|LTR12C	-	chr15	98044325	98103712	STRG.301093.4	-	98044325,98103234	98046739,98103712	0.850534
testis_male_adult_54_years	chr15	78660530	78660570	78660531	-	High_confidence	6	10	29	1.076828	4.378783	chr15	78660457	78660683	SINE|MIR|MIRb	-	chr15	78629352	78660532	CHRNB4|ENST00000559849.5	-	78629352,78630927,78631287,78634621,78635438,78649378,78652577,78655543,78656211,78657331,78658279,78660511	78629945,78631185,78631332,78634739,78635587,78649439,78652671,78655663,78656690,78657383,78658369,78660532	0.827586
testis_male_adult_54_years	chr6	41074380	41074405	41074384	+	RAMPAGE_only	2	2	10	0.371320	3.169925	chr6	41074294	41074597	LINE|L2|L2c	-	chr6	41073184	41097950	STRG.141237.7	+	41073184,41079028,41084045,41089578,41090203,41091527,41092911,41094395,41097356	41076295,41079164,41084192,41089710,41090309,41091694,41093085,41094497,41097950	0.900000
testis_male_adult_54_years	chr8	53523862	53523896	53523890	-	High_confidence	6	6	26	0.965432	4.483856	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.961538
testis_male_adult_54_years	chr7	136933850	136933868	136933850	+	High_confidence	7	7	22	0.816904	4.297079	chr7	136933065	136934097	LINE|L1|L1MB8	+	chr7	136934085	136934552	STRG.174811.1	+	136934085	136934552	0.500000
testis_male_adult_54_years	chr19	39838075	39838095	39838075	-	High_confidence	71	77	186	6.906554	6.460167	chr19	39837878	39838078	SINE|MIR|MIRb	-	chr19	39834459	39838091	FBL|ENST00000593503.5	-	39834459,39834667,39836555,39837710,39837958	39834562,39834813,39836668,39837843,39838091	0.897849
testis_male_adult_54_years	chr1	159005961	159005973	159005961	+	High_confidence	4	4	8	0.297056	2.807355	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.625000
testis_male_adult_54_years	chr4	176654159	176654178	176654159	+	RAMPAGE_only	3	3	9	0.334188	3.000000	chr4	176654199	176654308	SINE|MIR|MIRb	+	chr4	176669620	176706069	AC093801.1|ENST00000504017.5	+	176669620,176679699,176705902	176669709,176679750,176706069	0.555556
testis_male_adult_54_years	chr2	203206999	203207039	203206999	+	RAMPAGE_only	3	3	21	0.779772	4.221928	chr2	203206381	203207797	Retroposon|SVA|SVA_D	+	chr2	203208634	203226378	NBEAL1|ENST00000434469.1	+	203208634,203209160,203210957,203213517,203217252,203226122	203208753,203209322,203211106,203213653,203217350,203226378	0.571429
testis_male_adult_54_years	chr19	19930352	19930392	19930352	+	RAMPAGE_only	2	2	11	0.408452	2.846439	chr19	19929962	19930908	LTR|ERVK|LTR13	-	chr19	19901060	19935575	ZNF93|ENST00000343769.5	+	19901060,19915279,19916559,19933181	19901091,19915406,19916655,19935575	0.636364
testis_male_adult_54_years	chr12	20807273	20807308	20807307	+	RAMPAGE_only	11	12	25	0.928300	4.053661	chr12	20806554	20807989	LTR|ERV1|LTR12C	-	chr12	20810701	20875381	SLCO1B3|ENST00000540853.5	+	20810701,20815673,20855027,20858438,20861016,20862411,20862755,20875234	20810764,20815822,20855169,20858571,20861138,20862558,20862854,20875381	0.680000
testis_male_adult_54_years	chr14	73590108	73590109	73590108	-	High_confidence	151	152	159	5.903990	5.681310	chr14	73589718	73590989	LTR|ERV1|LTR12C	-	chr14	73588084	73590117	STRG.285846.3	-	73588084	73590117	0.874214
testis_male_adult_54_years	chr5	159421059	159421126	159421059	-	High_confidence	6	7	25	0.928300	4.083856	chr5	159420641	159421009	LTR|ERVL-MaLR|MSTD	-	chr5	159419564	159421062	STRG.131136.1	-	159419564,159420920	159420661,159421062	0.880000
testis_male_adult_54_years	chr9	92829117	92829118	92829117	+	RAMPAGE_only	7	7	8	0.297056	2.521641	chr9	92828933	92829639	LINE|L1|L1MA4A	+	chr9	92813906	92838457	ANKRD19P|ENST00000464387.5	+	92813906,92818317,92819241,92822209,92826524,92828937,92836776,92838256	92814047,92818424,92819379,92822277,92826578,92829163,92837740,92838457	0.875000
testis_male_adult_54_years	chr6	52531805	52531818	52531805	-	RAMPAGE_only	3	5	10	0.371320	3.169925	chr6	52531579	52531953	LINE|L2|L2a	+	chr6	52497401	52576915	TRAM2|ENST00000182527.3	-	52497401,52504590,52505598,52506031,52507552,52508233,52509527,52516005,52516627,52535782,52576795	52503270,52504754,52505742,52506136,52507623,52508318,52509586,52516122,52516737,52535846,52576915	0.700000
testis_male_adult_54_years	chr9	99937908	99937932	99937931	+	High_confidence	8	8	24	0.891168	4.277613	chr9	99936538	99938302	LINE|L1|L1ME2z	-	chr9	99937907	99968612	STX17|ENST00000525847.1	+	99937907,99951059,99959916,99960104,99967652,99968433	99938076,99951285,99960032,99960155,99967739,99968612	0.791667
testis_male_adult_54_years	chr9	64081729	64081730	64081729	+	RAMPAGE_only	4	4	6	0.222792	2.584963	chr9	64081480	64081779	LTR|Gypsy|MamGypLTR3a	-	chr9	64016971	64119913	STRG.202793.1	+	64016971,64024164,64026112,64054475,64060143,64075394,64075668,64078962,64080898,64083683,64095384,64099418,64103883,64104156,64110170,64114293,64115829,64117175,64119645	64017260,64024300,64026230,64054751,64060381,64075509,64075846,64079159,64081034,64083739,64095454,64099503,64104070,64104229,64110241,64114457,64116006,64118094,64119913	0.666667
testis_male_adult_54_years	chr4	28114210	28114213	28114212	-	RAMPAGE_only	7	9	12	0.445584	2.913977	chr4	28114035	28114374	LINE|L1|L1MB3	+	chr4	28031452	28116766	STRG.92033.1	-	28031452,28114050,28116447	28032460,28114185,28116766	0.833333
testis_male_adult_54_years	chr11	13487327	13487382	13487348	+	High_confidence	7	9	53	1.967997	5.119153	chr11	13487254	13487432	LTR|ERV1|LTR12D	-	chr11	13487221	13489248	STRG.230689.1	+	13487221	13489248	0.943396
testis_male_adult_54_years	chr5	997318	997342	997318	-	High_confidence	11	12	28	1.039696	4.593069	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.928571
testis_male_adult_54_years	chr11	41716923	41716960	41716959	-	RAMPAGE_only	5	5	17	0.631244	3.750000	chr11	41716669	41717187	LTR|ERV1|MER50B	-	chr11	41712143	41714649	STRG.233858.1	-	41712143,41714404	41712453,41714649	0.882353
testis_male_adult_54_years	chr17	1829438	1829451	1829438	-	High_confidence	7	7	20	0.742640	3.884184	chr17	1829188	1829555	LINE|L2|L2c	+	chr17	1781691	1829434	STRG.312164.2	-	1781691,1783359,1784325,1786809,1787421,1799856,1804625,1811970,1827860,1829348	1783158,1783476,1784461,1786973,1787604,1801024,1804715,1812115,1828006,1829434	0.800000
testis_male_adult_54_years	chr8	98176608	98176616	98176608	+	High_confidence	5	5	11	0.408452	3.277613	chr8	98176430	98176954	LTR|ERVL-MaLR|MLT1F	+	chr8	98176481	98180616	STRG.190556.1	+	98176481,98179821,98180593	98176908,98180044,98180616	0.727273
testis_male_adult_54_years	chr11	65429824	65430193	65430093	+	RAMPAGE_only	16	19	210	7.797722	6.437241	chr11	65430027	65430148	SINE|MIR|MIRb	+	chr11	65425550	65445540	STRG.235831.6	+	65425550,65437228	65437184,65445540	1.000000
testis_male_adult_54_years	chrX	27631883	27631884	27631883	+	RAMPAGE_only	7	7	8	0.297056	2.521641	chrX	27631805	27631892	LINE|L1|L1MB1	-	chrX	27590412	27748791	STRG.360953.1	+	27590412,27627351,27631878,27676945,27677835,27712557,27716087,27746837	27590440,27627458,27632000,27677045,27677912,27712649,27716171,27748791	0.750000
testis_male_adult_54_years	chr3	160061580	160061581	160061580	+	High_confidence	144	144	146	5.421274	5.210903	chr3	160060332	160061879	LTR|ERV1|LTR12C	+	chr3	160061569	160068839	STRG.81595.1	+	160061569,160062799,160068692	160061947,160062936,160068839	0.958904
testis_male_adult_54_years	chr22	42644562	42644578	42644577	-	High_confidence	4	4	14	0.519848	3.546594	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	0.928571
testis_male_adult_54_years	chr7	152806933	152806956	152806955	+	RAMPAGE_only	7	8	19	0.705508	3.905765	chr7	152806919	152807158	LTR|ERVL|LTR86A2	+	chr7	152810741	152855371	ACTR3B|ENST00000479402.1	+	152810741,152816484,152820298,152823341,152825029,152852125,152853493,152854457	152814645,152816588,152820442,152823515,152825122,152852251,152853577,152855371	0.736842
testis_male_adult_54_years	chr1	15340614	15340669	15340614	+	RAMPAGE_only	17	17	101	3.750333	5.732244	chr1	15340279	15340713	LTR|ERVL-MaLR|MLT1H	-	chr1	15341760	15384558	FHAD1|ENST00000444385.5	+	15341760,15345082,15345415,15352876,15358109,15360477,15362641,15365826,15367462,15369369,15374501,15375602,15380700,15381230,15382027,15383155	15341888,15345190,15345523,15352984,15358283,15360703,15362726,15365933,15367622,15369502,15374631,15375730,15380796,15381451,15382193,15384558	0.930693
testis_male_adult_54_years	chr2	222600057	222600065	222600057	-	RAMPAGE_only	2	4	8	0.297056	2.521641	chr2	222599989	222600062	LINE|RTE-BovB|MamRTE1	-	chr2	222570535	222656115	STRG.58417.1	-	222570535,222599927,222613810,222619644,222623649,222624271,222624713,222628836,222630112,222631603,222633198,222634390,222639579,222640861,222642850,222646800,222648739,222656015	222572022,222600083,222613928,222619737,222623730,222624479,222624775,222628888,222630174,222631674,222633307,222634541,222639695,222640931,222643005,222646996,222648795,222656115	0.750000
testis_male_adult_54_years	chr17	82081606	82081607	82081606	-	RAMPAGE_only	7	7	10	0.371320	3.169925	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	0.900000
testis_male_adult_54_years	chr2	135097643	135097648	135097643	+	RAMPAGE_only	3	4	8	0.297056	2.807355	chr2	135097520	135098516	LINE|L1|L1ME1	-	chr2	135089854	135175590	RAB3GAP1|ENST00000539493.2	+	135089854,135090997,135093614,135113150,135115215,135120818,135124164,135126180,135126582,135129994,135130551,135132894,135133860,135135264,135135563,135150368,135153648,135162554,135162747,135162985,135164593,135168544,135169733,135175326	135089872,135091130,135093693,135113270,135115381,135120918,135124246,135126249,135126656,135130087,135130721,135132984,135134033,135135319,135135932,135150506,135153876,135162651,135162851,135163101,135164696,135168749,135169848,135175590	0.875000
testis_male_adult_54_years	chr9	112374600	112374636	112374635	+	RAMPAGE_only	6	6	23	0.854036	4.349649	chr9	112373580	112376116	LTR|ERVL|HERVL-int	-	chr9	112379908	112472405	HSDL2|NM_032303.4	+	112379908,112403994,112405623,112408906,112416840,112418859,112438430,112441698,112454012,112459448,112470431	112380180,112404158,112405722,112409021,112416944,112418958,112438625,112441770,112454162,112459577,112472405	0.695652
testis_male_adult_54_years	chr4	81154201	81154222	81154221	-	High_confidence	6	6	19	0.705508	3.892407	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.947368
testis_male_adult_54_years	chr20	45670255	45670270	45670269	-	High_confidence	9	9	19	0.705508	4.058814	chr20	45669558	45672865	LINE|L1|L1PA15	+	chr20	45648562	45670270	WFDC11|ENST00000356562.6	-	45648562,45649256,45650500,45667087,45670181	45648739,45649399,45650651,45667169,45670270	0.789474
testis_male_adult_54_years	chr5	71375752	71375762	71375752	-	High_confidence	5	7	14	0.519848	3.324863	chr5	71375443	71375729	LINE|L2|L2b	-	chr5	71375209	71376029	STRG.119641.1	-	71375209	71376029	0.571429
testis_male_adult_54_years	chr7	53811930	53811957	53811930	-	High_confidence	102	103	290	10.768283	6.726564	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.737931
testis_male_adult_54_years	chr1	150714622	150714626	150714622	-	RAMPAGE_only	4	5	9	0.334188	2.725481	chr1	150714611	150714661	SINE|MIR|MIRc	+	chr1	150698553	150720840	STRG.16840.8	-	150698553,150703309,150704117,150704276,150706552,150708255,150708893,150711544,150711832,150714084,150714614,150717137,150719472,150720803	150700183,150703393,150704194,150704343,150706809,150708407,150708961,150711571,150711853,150714121,150714678,150717282,150719538,150720840	1.000000
testis_male_adult_54_years	chr4	188179799	188179803	188179802	+	High_confidence	31	43	53	1.967997	5.284340	chr4	188178805	188180215	LTR|ERV1|LTR12C	+	chr4	188179795	188181118	STRG.110609.1	+	188179795	188181118	1.000000
testis_male_adult_54_years	chr21	10541119	10541160	10541144	+	RAMPAGE_only	2	2	10	0.371320	3.169925	chr21	10541189	10541490	SINE|Alu|AluSq	+	chr21	10521574	10605716	TPTE|ENST00000618007.4	+	10521574,10524579,10527354,10538680,10541111,10542394,10543328,10552656,10559493,10561029,10567669,10569436,10569682,10570484,10577459,10578336,10578516,10590461,10592292,10595981,10598014,10602057,10603561,10605416	10521694,10524688,10527412,10538734,10541165,10542448,10543382,10552716,10559544,10561191,10567789,10569536,10569746,10570549,10577520,10578418,10578605,10590523,10592373,10596087,10598094,10602150,10603632,10605716	0.900000
testis_male_adult_54_years	chr5	75721265	75721291	75721265	-	RAMPAGE_only	2	2	7	0.259924	2.521641	chr5	75721029	75721372	LTR|ERVL-MaLR|MLT1H	+	chr5	75674197	75717488	POC5|NM_001099271.1	-	75674197,75677773,75685206,75689011,75690382,75692395,75694654,75702604,75705703,75707736,75712853,75717305	75674578,75677950,75685484,75689165,75690562,75692500,75694831,75702810,75705787,75707875,75712951,75717488	0.714286
testis_male_adult_54_years	chr3	51827278	51827285	51827282	+	High_confidence	6	6	16	0.594112	3.773557	chr3	51827125	51827451	LINE|L1|HAL1	+	chr3	51826882	51830858	IQCF3|NM_001207023.1	+	51826882,51828155,51828645,51829273,51829422,51829664,51830402	51827314,51828221,51828807,51829306,51829493,51829712,51830858	0.687500
testis_male_adult_54_years	chr22	25477438	25477457	25477438	+	RAMPAGE_only	13	17	34	1.262488	4.140320	chr22	25477318	25477526	SINE|MIR|MIRb	-	chr22	25476217	25479971	AL008721.2|ENST00000609475.1	+	25476217	25479971	0.882353
testis_male_adult_54_years	chr12	48852795	48852836	48852820	-	High_confidence	11	18	50	1.856601	5.328996	chr12	48852650	48852813	DNA|hAT-Charlie|MER20B	-	chr12	48840128	48852842	DDX23|ENST00000552555.1	-	48840128,48843939,48845573,48852623	48840151,48844050,48845782,48852842	0.560000
testis_male_adult_54_years	chr20	62367003	62367004	62367003	-	High_confidence	7	7	8	0.297056	2.521641	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.875000
testis_male_adult_54_years	chr16	13931974	13932026	13931974	+	High_confidence	18	25	87	3.230485	4.809810	chr16	13931846	13931997	DNA|hAT-Charlie|Charlie1a	-	chr16	13931934	13948425	STRG.303480.5	+	13931934,13934191,13935145,13944722,13947613	13932285,13934302,13937858,13944835,13948425	0.942529
testis_male_adult_54_years	chr15	78437560	78437579	78437560	+	High_confidence	3	3	10	0.371320	2.947703	chr15	78437296	78437621	LINE|L2|L2	-	chr15	78437430	78465264	IREB2|ENST00000560840.5	+	78437430,78439794,78462921,78465250	78437721,78439881,78463087,78465264	0.600000
testis_male_adult_54_years	chr2	112565788	112565833	112565832	+	RAMPAGE_only	27	27	68	2.524977	5.657882	chr2	112565729	112565937	LTR|ERVL|MER21B	-	chr2	112564361	112575089	POLR1B|ENST00000458012.2	+	112564361,112567966,112572641,112573561,112574846	112564499,112568137,112572758,112573815,112575089	0.514706
testis_male_adult_54_years	chr12	547155	547180	547175	+	High_confidence	10	10	39	1.448148	5.101345	chr12	547182	547492	LINE|L1|L1MA4A	+	chr12	547638	563478	B4GALNT3|ENST00000647602.1	+	547638,548230,549768,550921,552062,552466,556546,557607,557890,558507,559294,561342	548102,548297,549912,551031,552163,553983,556866,557761,558088,558661,559421,563478	0.717949
testis_male_adult_54_years	chr4	137750951	137750969	137750951	-	RAMPAGE_only	33	34	69	2.562109	4.484146	chr4	137750818	137751297	LTR|ERVL|LTR16B2	+	chr4	137707133	137707511	STRG.103851.1	-	137707133	137707511	0.724638
testis_male_adult_54_years	chr20	42869107	42869139	42869138	-	High_confidence	3	3	9	0.334188	3.169925	chr20	42868035	42869770	LTR|ERVL-MaLR|MLT1A1-int	+	chr20	42868176	42869231	STRG.345108.1	-	42868176	42869231	0.777778
testis_male_adult_54_years	chr12	129208416	129208453	129208423	+	High_confidence	7	7	24	0.891168	4.136842	chr12	129208448	129208541	LINE|L2|L2a	+	chr12	129208600	129212662	LOC101927735|NR_110058.1	+	129208600,129209557,129210036,129210929,129211962	129208953,129209723,129210266,129211048,129212662	0.666667
testis_male_adult_54_years	chr3	6664933	6664952	6664933	-	High_confidence	17	17	26	0.965432	4.440636	chr3	6664744	6665243	LTR|ERVL|MER70C	+	chr3	6631899	6664906	GRM7-AS3|ENST00000445675.5	-	6631899,6635086,6644838,6664828	6632579,6635197,6644889,6664906	0.692308
testis_male_adult_54_years	chr12	10363662	10363664	10363662	+	High_confidence	12	16	23	0.854036	4.061482	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.652174
testis_male_adult_54_years	chr1	62194388	62194409	62194388	+	High_confidence	3	3	11	0.408452	3.277613	chr1	62194197	62194528	LINE|L2|L2a	-	chr1	62194801	62212328	L1TD1|NM_001164835.1	+	62194801,62196434,62203446,62206518,62209782	62194921,62196528,62203557,62207636,62212328	0.818182
testis_male_adult_54_years	chr14	50313432	50313436	50313435	-	High_confidence	4	5	8	0.297056	2.807355	chr14	50313276	50313437	SINE|MIR|MIRb	+	chr14	50242433	50312548	L2HGDH|ENST00000267436.8	-	50242433,50265357,50267752,50269162,50278519,50283870,50294114,50302016,50302901,50312010	50247253,50265489,50267910,50269330,50278554,50284033,50294246,50302168,50303017,50312548	0.500000
testis_male_adult_54_years	chr2	190348964	190348966	190348964	+	RAMPAGE_only	5	6	9	0.334188	3.000000	chr2	190348778	190348999	SINE|MIR|MIR3	-	chr2	190344078	190369272	INPP1|ENST00000423767.5	+	190344078,190360038,190362626,190366694,190369102	190344218,190360306,190362687,190366895,190369272	0.888889
testis_male_adult_54_years	chr21	39377302	39377303	39377302	+	High_confidence	4	4	7	0.259924	2.584963	chr21	39377047	39377522	LTR|ERVL-MaLR|MLT1D	+	chr21	39377697	39406615	WRB|ENST00000415847.3	+	39377697,39390697,39391768,39393165,39405913	39377824,39390863,39391836,39393280,39406615	0.714286
testis_male_adult_54_years	chr22	50785220	50785237	50785226	+	RAMPAGE_only	4	4	15	0.556980	3.506891	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.866667
testis_male_adult_54_years	chr20	9619805	9619814	9619805	-	RAMPAGE_only	4	4	8	0.297056	2.521641	chr20	9619571	9619849	LINE|CR1|L3	-	chr20	9537388	9838831	PAK5|ENST00000378423.5	-	9537388,9542585,9544368,9557607,9562890,9565892,9580144,9644124,9711285,9784357,9838761	9539617,9542720,9544494,9557734,9563024,9566384,9580930,9644339,9711435,9784506,9838831	0.625000
testis_male_adult_54_years	chr21	35800979	35801029	35800979	-	RAMPAGE_only	4	4	19	0.705508	3.836592	chr21	35800548	35804643	LINE|L1|L1PBa1	+	chr21	35064605	35887915	STRG.351362.8	-	35064605,35461960,35580659,35864284,35886209	35065072,35462025,35580929,35864467,35887915	0.578947
testis_male_adult_54_years	chr6	139677638	139677671	139677638	+	High_confidence	13	14	35	1.299620	4.557854	chr6	139677532	139677837	SINE|Alu|AluY	-	chr6	139677652	139678200	STRG.153143.1	+	139677652	139678200	0.657143
testis_male_adult_54_years	chr3	17861145	17861168	17861145	+	High_confidence	6	6	14	0.519848	3.546594	chr3	17858274	17861391	LINE|L1|L1HS	-	chr3	17860790	18041541	STRG.64191.1	+	17860790,18013654,18016617,18041448	17861402,18013774,18016711,18041541	0.571429
testis_male_adult_54_years	chr13	41457974	41458007	41457980	+	High_confidence	10	10	72	2.673505	5.801087	chr13	41458006	41458136	SINE|MIR|MIRb	+	chr13	41457940	41470871	STRG.267026.2	+	41457940,41458284,41466822,41468775,41470477	41458140,41458470,41466930,41468838,41470871	0.944444
testis_male_adult_54_years	chr9	86275132	86275133	86275132	-	RAMPAGE_only	6	6	8	0.297056	2.807355	chr9	86275028	86275195	SINE|MIR|MIRb	+	chr9	86265678	86282108	ISCA1|ENST00000311534.6	-	86265678,86272006,86274188,86281968	86266191,86272112,86274242,86282108	0.625000
testis_male_adult_54_years	chr10	72355410	72355427	72355410	+	RAMPAGE_only	9	9	17	0.631244	3.969816	chr10	72355306	72355700	LINE|L2|L2a	-	chr10	72353860	72357428	STRG.220946.1	+	72353860,72356869	72356829,72357428	0.764706
testis_male_adult_54_years	chr8	137115750	137115762	137115751	+	High_confidence	7	8	14	0.519848	3.546594	chr8	137115151	137116106	LTR|ERV1|LTR12D	-	chr8	137115364	137116111	STRG.194916.1	+	137115364	137116111	0.571429
testis_male_adult_54_years	chr21	23021267	23021268	23021267	-	RAMPAGE_only	8	8	11	0.408452	2.845351	chr21	23021089	23021886	LTR|ERV1|LTR12D	-	chr21	22961364	22984758	STRG.349394.1	-	22961364,22984292	22966348,22984758	0.727273
testis_male_adult_54_years	chr2	216107572	216107599	216107598	+	High_confidence	2	2	6	0.222792	2.584963	chr2	216107336	216107624	SINE|Alu|AluJo	+	chr2	216107463	216206303	XRCC5|ENST00000392133.7	+	216107463,216107652,216109090,216113015,216116658,216117745,216119042,216122061,216125916,216127535,216130874,216132324,216137087,216138088,216141185,216148082,216160067,216161978,216190224,216192638,216194918,216204321,216205187	216107532,216107698,216109457,216113129,216116842,216117794,216119165,216122253,216126031,216127674,216130987,216132387,216137225,216138179,216141319,216148276,216160161,216162048,216190334,216192735,216194986,216204396,216206303	0.500000
testis_male_adult_54_years	chr15	40657129	40657145	40657144	+	RAMPAGE_only	6	6	10	0.371320	3.169925	chr15	40657015	40657149	LINE|L2|L2	+	chr15	40623131	40664339	KNL1|ENST00000526913.5	+	40623131,40628069,40628610,40629272,40640911,40644996,40645655,40646986,40650300,40650543,40651470,40652004,40654908,40657041,40657354,40659338,40662073,40663334	40625640,40628208,40628678,40629371,40641027,40645087,40645772,40647074,40650378,40650583,40651572,40652105,40654977,40657151,40657473,40659461,40662683,40664339	0.800000
testis_male_adult_54_years	chr19	48637367	48637379	48637367	-	High_confidence	42	44	94	3.490409	5.488145	chr19	48637310	48637367	LINE|L1|X9_LINE	+	chr19	48633085	48637363	DBP|ENST00000601104.1	-	48633085,48635579,48636855	48633655,48635990,48637363	0.925532
testis_male_adult_54_years	chr7	115789531	115789532	115789531	-	High_confidence	35	35	45	1.670940	4.520194	chr7	115789220	115790263	LTR|ERV1|LTR12D	-	chr7	115788981	115789566	STRG.171661.1	-	115788981	115789566	0.777778
testis_male_adult_54_years	chr20	37298760	37298761	37298760	+	RAMPAGE_only	11	11	12	0.445584	3.277613	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.916667
testis_male_adult_54_years	chr9	36393563	36393599	36393598	-	RAMPAGE_only	7	7	24	0.891168	4.368523	chr9	36393549	36393994	LTR|ERVL-MaLR|MLT1E1A	+	chr9	36336395	36400216	RNF38|ENST00000259605.10	-	36336395,36342324,36344831,36351114,36352741,36353169,36356302,36357774,36369718,36375933,36390466,36400096	36339814,36342424,36344953,36351199,36352848,36353331,36356473,36357942,36369932,36376127,36390616,36400216	0.666667
testis_male_adult_54_years	chr5	176168200	176168240	176168220	-	High_confidence	4	4	21	0.779772	4.106603	chr5	176167895	176168757	LINE|L1|L1MC4	+	chr5	176158610	176168038	AC139491.2|ENST00000503307.2	-	176158610,176167662	176159196,176168038	0.904762
testis_male_adult_54_years	chr3	148280084	148280085	148280084	-	High_confidence	192	192	212	7.871986	5.710341	chr3	148279782	148281080	LTR|ERV1|LTR12C	-	chr3	148195728	148280098	LINC02045|ENST00000460324.1	-	148195728,148207845,148210024,148220509,148279781	148195834,148207934,148210088,148220612,148280098	0.783019
testis_male_adult_54_years	chr4	136099242	136099243	136099242	-	High_confidence	371	373	414	15.372653	6.116994	chr4	136098825	136099390	LTR|ERV1|LTR12D	-	chr4	136097796	136099240	AC073429.2|ENST00000569694.1	-	136097796	136099240	0.971014
testis_male_adult_54_years	chr15	31923415	31923426	31923425	+	High_confidence	5	5	11	0.408452	2.921928	chr15	31923140	31923736	LTR|ERV1|LTR12_	+	chr15	31923429	31924061	STRG.291587.1	+	31923429	31924061	0.818182
testis_male_adult_54_years	chr2	548994	549009	548994	+	High_confidence	3	3	16	0.594112	3.625000	chr2	548902	549130	LINE|L1|L1MC1	+	chr2	549007	549468	STRG.29204.1	+	549007	549468	0.750000
testis_male_adult_54_years	chr11	17282810	17282822	17282821	+	RAMPAGE_only	16	16	35	1.299620	4.793345	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.914286
testis_male_adult_54_years	chr20	41560617	41560646	41560645	-	RAMPAGE_only	3	4	8	0.297056	3.000000	chr20	41560402	41560660	LINE|L2|L2c	+	chr20	41402100	41618375	STRG.344224.1	-	41402100,41412143,41413323,41415185,41416587,41417197,41420507,41423491,41425177,41426092,41437273,41439999,41445664,41447881,41450945,41451825,41452739,41454625,41455799,41457263,41473321,41483308,41484351,41487664,41488427,41489777,41491697,41493537,41493857,41497383,41498167,41499294,41512845,41514804,41533049,41551304,41560535,41561934,41618339	41405489,41412263,41413515,41415638,41416794,41417349,41422079,41423700,41425394,41426153,41437334,41440129,41445768,41447971,41451105,41452025,41452942,41454736,41455979,41457428,41473517,41483519,41484607,41487808,41488604,41490021,41491819,41493672,41493944,41497501,41498226,41499357,41512995,41514952,41533570,41551360,41560643,41564151,41618375	0.500000
testis_male_adult_54_years	chr16	8089979	8089988	8089979	-	High_confidence	7	7	12	0.445584	3.084963	chr16	8089682	8090110	LTR|ERVL-MaLR|MLT1C	+	chr16	8089239	8090046	STRG.302387.1	-	8089239	8090046	0.833333
testis_male_adult_54_years	chr20	31418541	31418542	31418541	-	RAMPAGE_only	5	6	7	0.259924	2.521641	chr20	31418431	31418778	LTR|ERV1|MER66A	+	chr20	31404844	31412838	DEFB121|ENST00000376312.3	-	31404844,31412621	31405085,31412838	0.714286
testis_male_adult_54_years	chr4	134383474	134383486	134383485	+	RAMPAGE_only	46	46	92	3.416145	5.903784	chr4	134383188	134383699	LTR|ERV1|LTR1D	+	chr4	134423866	134457852	LINC02462|ENST00000503009.1	+	134423866,134455293,134457743	134423956,134455524,134457852	0.695652
testis_male_adult_54_years	chr13	60144526	60144527	60144526	-	RAMPAGE_only	43	45	53	1.967997	5.228758	chr13	60144418	60144964	LTR|ERVL-MaLR|MLT1O	+	chr13	59774058	60163766	DIAPH3|ENST00000267215.8	-	59774058,59774727,59810787,59833106,59839323,59861406,59879228,59911734,59916154,59924774,59969943,59970851,59974351,59980794,59983768,59991157,59992067,59992472,60008543,60010532,60015912,60016070,60042689,60093627,60112009,60132956,60163586	59774248,59774823,59810923,59833271,59839448,59861536,59879468,59911836,59916249,59924870,59970058,59971160,59974456,59980859,59983887,59991274,59992186,59992583,60008649,60010669,60015982,60016145,60042820,60093732,60112186,60132989,60163766	0.679245
testis_male_adult_54_years	chr13	22728679	22728680	22728679	-	High_confidence	7	7	11	0.408452	3.121928	chr13	22728318	22728911	LTR|ERV1|LTR12_	-	chr13	22727995	22728620	STRG.264933.1	-	22727995	22728620	0.636364
testis_male_adult_54_years	chr4	89490470	89490505	89490470	-	RAMPAGE_only	32	34	140	5.198482	5.665932	chr4	89489873	89491365	LTR|ERV1|LTR12C	+	chr4	89459838	89460223	STRG.97492.1	-	89459838	89460223	0.578571
testis_male_adult_54_years	chr20	60778841	60778861	60778858	+	High_confidence	10	11	29	1.076828	4.073330	chr20	60778677	60779110	LTR|ERVL-MaLR|MLT1C	+	chr20	60778729	60779377	STRG.346937.1	+	60778729	60779377	0.931034
testis_male_adult_54_years	chr8	116950103	116950132	116950103	+	High_confidence	4	4	14	0.519848	3.807355	chr8	116948944	116950299	LTR|ERV1|LTR12C	-	chr8	116950272	117172791	SLC30A8|ENST00000521243.5	+	116950272,116951018,117146818,117146953,117152943,117157690,117161737,117163424,117171033,117172535	116950385,116951119,117146848,117147153,117153090,117157844,117161888,117163530,117171168,117172791	0.642857
testis_male_adult_54_years	chr3	152107594	152107604	152107594	-	RAMPAGE_only	3	3	8	0.297056	2.500000	chr3	152107245	152107810	LTR|ERVL-MaLR|MLT1G1	-	chr3	152073507	152073802	STRG.80462.1	-	152073507	152073802	0.750000
testis_male_adult_54_years	chr12	129109673	129109674	129109673	+	High_confidence	29	29	36	1.336752	4.029399	chr12	129109479	129109833	LTR|ERVL-MaLR|THE1A	+	chr12	129109689	129113298	LOC283352|NR_104173.1	+	129109689,129110992,129113064	129109757,129111139,129113298	0.805556
testis_male_adult_54_years	chr6	115643879	115643909	115643893	-	High_confidence	5	6	21	0.779772	4.297079	chr6	115643879	115644641	LTR|ERVL|MER21A	+	chr6	115633541	115643835	LOC105377962|NR_134602.1	-	115633541,115634139,115636221,115643804	115633772,115634347,115636264,115643835	0.571429
testis_male_adult_54_years	chr10	96133600	96133645	96133625	+	RAMPAGE_only	4	5	18	0.668376	3.852169	chr10	96133568	96133657	DNA|TcMar-Tigger|Tigger12A	-	chr10	96130055	96163752	ZNF518A|ENST00000624776.3	+	96130055,96132585,96133555,96155325,96155923,96156196	96130118,96132670,96133648,96155398,96156047,96163752	0.500000
testis_male_adult_54_years	chr7	140271006	140271008	140271007	-	High_confidence	5	8	9	0.334188	2.750000	chr7	140270658	140271868	LTR|ERV1|LTR12C	-	chr7	140260065	140270973	STRG.175229.1	-	140260065,140262648,140270658	140260460,140262766,140270973	0.777778
testis_male_adult_54_years	chr15	90511352	90511353	90511352	+	High_confidence	133	134	145	5.384142	5.047544	chr15	90510776	90511739	LTR|ERV1|LTR12D	+	chr15	90511139	90512313	STRG.299345.1	+	90511139	90512313	0.937931
testis_male_adult_54_years	chr13	20601888	20601920	20601919	+	RAMPAGE_only	2	2	6	0.222792	2.584963	chr13	20601958	20602042	SINE|MIR|MIR3	+	chr13	20605055	20632139	IFT88|ENST00000461115.5	+	20605055,20614356,20615792,20625749,20631015	20605105,20614435,20615879,20625849,20632139	0.666667
testis_male_adult_54_years	chr18	72209110	72209187	72209137	-	High_confidence	5	5	30	1.113960	4.640224	chr18	72208942	72210364	LTR|ERV1|LTR12C	+	chr18	71937265	72209702	STRG.329997.1	-	71937265,71938240,71944478,72208931	71937406,71938275,71944602,72209702	0.600000
testis_male_adult_54_years	chr1	66847506	66847525	66847506	-	RAMPAGE_only	9	11	16	0.594112	3.577820	chr1	66847293	66847456	SINE|Alu|FRAM	-	chr1	66837606	66862303	WDR78|ENST00000531552.1	-	66837606,66840468,66862146	66837796,66840671,66862303	0.812500
testis_male_adult_54_years	chr4	134383446	134383477	134383465	-	High_confidence	4	4	19	0.705508	4.058814	chr4	134383188	134383699	LTR|ERV1|LTR1D	+	chr4	134380955	134383430	STRG.103484.1	-	134380955	134383430	0.578947
testis_male_adult_54_years	chr3	13403415	13403439	13403415	-	RAMPAGE_only	3	3	7	0.259924	2.584963	chr3	13403181	13403548	LTR|ERVL-MaLR|MLT1A0	-	chr3	13316234	13420309	NUP210|ENST00000254508.6	-	13316234,13319071,13319229,13319762,13321584,13322192,13323308,13325794,13327216,13328770,13330459,13332292,13335453,13336786,13337836,13339853,13340235,13341747,13341995,13343174,13351878,13352079,13353553,13353914,13358221,13360269,13365945,13371833,13373717,13375503,13376290,13377455,13378911,13379562,13386274,13388302,13391210,13397356,13399724,13420059	13317781,13319155,13319325,13319979,13321835,13322339,13323432,13325931,13327437,13328946,13330634,13332384,13335612,13336918,13337917,13340033,13340298,13341883,13342123,13343303,13351980,13352184,13353660,13354107,13358395,13360491,13366091,13372032,13373873,13375641,13376431,13377562,13378980,13379721,13386407,13388453,13391307,13397488,13399861,13420309	0.571429
testis_male_adult_54_years	chr3	130276692	130276729	130276697	-	High_confidence	30	30	94	3.490409	4.344020	chr3	130276493	130276657	SINE|MIR|MIRc	-	chr3	130275519	130276712	STRG.77624.1	-	130275519,130276615	130275972,130276712	0.957447
testis_male_adult_54_years	chr5	39213218	39213263	39213249	-	High_confidence	9	10	35	1.299620	3.452645	chr5	39213125	39213289	SINE|MIR|MIRc	-	chr5	39107283	39213086	STRG.116568.1	-	39107283,39108230,39110355,39118873,39119534,39122335,39124252,39127740,39130589,39134207,39134854,39137599,39138656,39139232,39141094,39153447,39201825,39212677	39107465,39108262,39110389,39119036,39119634,39122402,39124278,39127807,39130612,39134349,39135014,39137720,39138691,39139252,39141141,39153604,39202987,39213086	0.971429
testis_male_adult_54_years	chr16	14321790	14321801	14321790	+	High_confidence	5	5	10	0.371320	3.121928	chr16	14321672	14321798	LTR|ERVL-MaLR|MLT1K	+	chr16	14322470	14326512	MIR193BHG|ENST00000641033.1	+	14322470,14323296,14326012	14322543,14323383,14326512	0.600000
testis_male_adult_54_years	chr1	179312548	179312590	179312569	+	RAMPAGE_only	12	13	37	1.373884	4.607706	chr1	179312548	179312870	LTR|ERVL|LTR33	+	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.972973
testis_male_adult_54_years	chr17	30115481	30115512	30115505	+	High_confidence	3	3	9	0.334188	3.000000	chr17	30115129	30115543	LINE|L1|L1MEc	+	chr17	30115520	30185847	NSRP1|ENST00000540900.7	+	30115520,30116645,30172541,30178070,30179089,30180907,30184614	30115623,30116863,30172598,30178199,30179297,30181016,30185847	0.888889
testis_male_adult_54_years	chr8	109329922	109329943	109329925	-	High_confidence	3	4	13	0.482716	3.418296	chr8	109329908	109330059	LINE|L2|L2b	-	chr8	109240918	109329933	NUDCD1|NM_001128211.1	-	109240918,109245321,109271004,109275351,109280967,109289750,109293343,109296383,109322308,109329804	109243301,109245481,109271130,109275496,109281172,109289933,109293524,109296569,109322463,109329933	0.846154
testis_male_adult_54_years	chr3	118943071	118943110	118943073	+	High_confidence	171	248	686	25.472560	6.792949	chr3	118942695	118943326	LTR|Gypsy|MamGypLTR1a	+	chr3	118943072	118948241	IGSF11-AS1|ENST00000477009.2	+	118943072,118944861,118945867,118947048	118943186,118944990,118946035,118948241	0.976676
testis_male_adult_54_years	chr3	16524653	16524680	16524664	-	High_confidence	45	54	120	4.455841	5.690540	chr3	16524297	16524899	LTR|ERVL-MaLR|MLT1G3	-	chr3	16523624	16524656	STRG.63764.1	-	16523624	16524656	0.958333
testis_male_adult_54_years	chr1	51878018	51878060	51878018	-	High_confidence	18	19	107	3.973125	6.094483	chr1	51877640	51878001	LINE|CR1|L3	-	chr1	51789191	51878040	NRDC|NM_001242361.1	-	51789191,51789567,51790532,51790899,51791577,51792045,51792376,51794471,51794822,51798248,51800555,51803813,51805509,51806793,51809314,51810280,51811993,51814034,51814550,51814692,51816311,51818065,51819799,51821497,51823663,51825286,51827795,51834016,51836130,51836368,51837486,51840225,51877982	51789433,51789657,51790649,51790990,51791661,51792098,51792424,51794610,51794854,51798411,51800683,51803964,51805561,51806913,51809401,51810404,51812098,51814089,51814609,51814813,51816389,51818135,51819873,51821555,51823786,51825382,51827869,51834170,51836212,51836438,51837620,51840514,51878040	0.925234
testis_male_adult_54_years	chr8	125750257	125750261	125750257	-	High_confidence	49	61	119	4.418709	6.111973	chr8	125750117	125750579	LTR|ERV1|MER51A	+	chr8	125749054	125750241	AC016074.1|ENST00000518339.1	-	125749054,125749899	125749348,125750241	0.966387
testis_male_adult_54_years	chr3	8677499	8677515	8677505	+	High_confidence	6	6	20	0.742640	3.641446	chr3	8677202	8677807	LTR|ERV1|HERVE-int	+	chr3	8677333	8679913	STRG.62479.1	+	8677333,8678131,8679791	8677883,8678306,8679913	0.850000
testis_male_adult_54_years	chr13	87854588	87854621	87854588	+	High_confidence	2	2	10	0.371320	3.121928	chr13	87854480	87854783	SINE|Alu|AluSx1	-	chr13	87854675	87855450	STRG.273459.1	+	87854675	87855450	0.900000
testis_male_adult_54_years	chr2	169840447	169840459	169840458	+	RAMPAGE_only	3	3	15	0.556980	3.640224	chr2	169840412	169841348	LTR|ERVL-MaLR|MLT1A1-int	-	chr2	169827507	170084131	UBR3|NM_172070.3	+	169827507,169872235,169875790,169877493,169878524,169891164,169895180,169896506,169905113,169906030,169914059,169923928,169924083,169925618,169926691,169926837,169927319,169928726,169932911,169942492,169946287,169947541,169949604,169958437,169986644,169994322,170001303,170006989,170008803,170015280,170029345,170040881,170055459,170061078,170061317,170073427,170079813,170080544,170081725	169828052,169872375,169875949,169877637,169878574,169891231,169895311,169896735,169905293,169906164,169914146,169923994,169924173,169925747,169926744,169926971,169927405,169928868,169933008,169942634,169946392,169947715,169950065,169958526,169986794,169994456,170001414,170007190,170008940,170015366,170029448,170040985,170055584,170061186,170061443,170073607,170080023,170080684,170084131	0.666667
testis_male_adult_54_years	chr11	94974824	94974825	94974824	-	RAMPAGE_only	48	49	66	2.450713	5.680758	chr11	94974577	94975336	LINE|L2|L2a	+	chr11	94962621	94973612	CWC15|NM_016403.3	-	94962621,94966294,94969988,94970976,94971374,94972054,94973497	94963514,94966413,94970096,94971065,94971487,94972193,94973612	0.984848
testis_male_adult_54_years	chr9	15430128	15430162	15430147	+	RAMPAGE_only	5	6	23	0.854036	3.788755	chr9	15430148	15430451	SINE|Alu|AluJo	+	chr9	15423141	15433824	SNAPC3|ENST00000461041.1	+	15423141,15423908,15433551	15423193,15423986,15433824	0.652174
testis_male_adult_54_years	chr1	6200699	6200738	6200737	-	High_confidence	7	9	39	1.448148	3.605254	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	1.000000
testis_male_adult_54_years	chr14	35832454	35832455	35832454	+	High_confidence	11	11	17	0.631244	3.375000	chr14	35832222	35832520	SINE|Alu|AluYf1	+	chr14	35833000	35932325	BRMS1L|ENST00000551774.1	+	35833000,35834843,35862589,35863869,35864934,35865721,35867905,35931722	35833105,35834923,35862686,35863953,35864999,35865761,35868032,35932325	0.941176
testis_male_adult_54_years	chr19	211774	211825	211824	-	High_confidence	5	5	15	0.556980	3.323231	chr19	211604	211898	SINE|Alu|AluJr	+	chr19	208187	212219	LINC01002|ENST00000633151.1	-	208187,211761,212017	208391,211885,212219	0.533333
testis_male_adult_54_years	chr4	175427794	175427822	175427812	-	High_confidence	11	14	44	1.633808	4.990105	chr4	175427746	175428951	LTR|ERV1|LTR12D	+	chr4	174979281	175428402	STRG.108923.1	-	174979281,174993815,175038568,175236580,175402970,175427725	174990145,174993902,175038723,175236698,175403107,175428402	0.568182
testis_male_adult_54_years	chr8	57219253	57219334	57219253	+	High_confidence	8	8	39	1.448148	5.090033	chr8	57219003	57219613	LTR|ERV1|MER50-int	-	chr8	57219378	57220738	LINC01606|ENST00000517611.1	+	57219378,57220110,57220588	57219623,57220295,57220738	0.769231
testis_male_adult_54_years	chr6	163703929	163703934	163703929	+	High_confidence	3	3	7	0.259924	2.521641	chr6	163703408	163704012	LTR|ERVL-MaLR|MLT1H1-int	-	chr6	163703903	163759841	AL137005.1|ENST00000452944.1	+	163703903,163759224	163704005,163759841	1.000000
testis_male_adult_54_years	chr1	167968437	167968472	167968471	+	High_confidence	80	81	297	11.028207	6.775679	chr1	167968140	167968902	LTR|ERVL|LTR41	-	chr1	167968489	167991339	DCAF6|ENST00000491067.1	+	167968489,167969203,167974829,167987494,167991203	167968533,167969259,167975015,167987608,167991339	0.632997
testis_male_adult_54_years	chr3	109316356	109316480	109316439	-	High_confidence	16	16	137	5.087086	6.315450	chr3	109316062	109316450	SINE|Alu|AluJr	-	chr3	109293787	109316517	DPPA2|ENST00000478945.1	-	109293787,109300370,109304474,109308031,109309025,109309169,109312544,109314509,109316283	109294004,109300435,109304670,109308293,109309079,109309330,109312692,109314555,109316517	0.956204
testis_male_adult_54_years	chr12	98287034	98287045	98287044	-	RAMPAGE_only	3	5	9	0.334188	2.725481	chr12	98286905	98287345	LINE|L1|L1MEd	+	chr12	98286243	98289352	STRG.259804.1	-	98286243	98289352	0.666667
testis_male_adult_54_years	chr10	113153721	113153727	113153721	+	RAMPAGE_only	4	4	10	0.371320	3.321928	chr10	113153599	113153728	LTR|ERVL-MaLR|MLT1J2	-	chr10	113151830	113165940	TCF7L2|ENST00000470254.1	+	113151830,113152332,113158020,113159919,113160618,113161578,113165554	113151884,113152440,113158069,113159992,113160691,113161603,113165940	0.600000
testis_male_adult_54_years	chr3	174211233	174211234	174211233	-	High_confidence	46	46	47	1.745205	4.775597	chr3	174210920	174212537	LTR|ERV1|LTR12C	-	chr3	174206651	174211249	STRG.83937.1	-	174206651,174210874	174206731,174211249	0.829787
testis_male_adult_54_years	chr13	87811226	87811259	87811254	-	High_confidence	29	42	126	4.678633	6.301934	chr13	87810512	87811351	LTR|ERV1|LTR1A2	-	chr13	87807633	87811232	AL445647.1|ENST00000606221.1	-	87807633	87811232	1.000000
testis_male_adult_54_years	chr10	119396118	119396158	119396143	+	RAMPAGE_only	5	5	25	0.928300	4.563856	chr10	119396086	119396244	SINE|MIR|MIR	-	chr10	119289540	119455619	STRG.226812.2	+	119289540,119326515,119380814,119396694,119423165,119424992,119430374,119431386,119436650,119439730,119441998,119443543,119448122,119452670,119453144,119454968	119289616,119326611,119380927,119396772,119423266,119425085,119430438,119431527,119436841,119439768,119442088,119443752,119448260,119452808,119453276,119455619	0.520000
testis_male_adult_54_years	chrX	141502842	141502854	141502850	+	High_confidence	6	10	24	0.891168	4.459432	chrX	141502747	141503606	LTR|ERV1|LTR17	-	chrX	141502848	141649939	SPANXA2-OT1|NR_037183.2	+	141502848,141514711,141520471,141648798	141503239,141514829,141520519,141649939	0.750000
testis_male_adult_54_years	chr2	68567191	68567201	68567191	+	RAMPAGE_only	3	3	8	0.297056	2.521641	chr2	68567056	68567194	LINE|L2|L2a	+	chr2	68558341	68627304	STRG.39638.4	+	68558341,68568235,68577819,68586771,68587807,68612098,68627062	68567387,68568350,68578003,68586978,68587949,68612247,68627304	0.875000
testis_male_adult_54_years	chr2	20331789	20331790	20331789	-	RAMPAGE_only	9	9	9	0.334188	3.169925	chr2	20331715	20331792	DNA|TcMar-Tigger|Tigger15a	-	chr2	20248691	20327386	PUM2|NM_001282791.1	-	20248691,20253821,20254862,20255215,20256032,20258242,20260336,20263192,20282946,20283342,20290651,20294375,20297552,20307977,20308313,20311493,20312235,20318536,20326260,20327309	20251716,20254014,20254984,20255341,20256170,20258371,20260466,20263460,20283231,20283486,20290790,20294518,20297678,20308071,20308584,20311663,20312423,20318645,20326385,20327386	0.666667
testis_male_adult_54_years	chr8	57207815	57207840	57207839	+	RAMPAGE_only	5	5	12	0.445584	3.418296	chr8	57207197	57207942	LTR|ERV1|MER50	-	chr8	57193619	57220236	STRG.184749.3	+	57193619,57193884,57208831,57210675,57212877,57215108,57218269,57220110	57193689,57208668,57208928,57212583,57214932,57217976,57219623,57220236	1.000000
testis_male_adult_54_years	chr16	30097077	30097081	30097080	+	High_confidence	9	9	16	0.594112	3.875000	chr16	30096875	30097207	LTR|ERV1|LTR10B2	+	chr16	30096429	30104116	AC012645.1|ENST00000515455.2	+	30096429,30103456	30097419,30104116	0.625000
testis_male_adult_54_years	chr18	58780195	58780236	58780219	-	High_confidence	4	5	15	0.556980	3.807355	chr18	58780024	58780390	LTR|ERVL-MaLR|MSTA	-	chr18	58779343	58780114	STRG.328412.1	-	58779343	58780114	0.600000
testis_male_adult_54_years	chr1	59858475	59858514	59858513	+	RAMPAGE_only	6	6	19	0.705508	3.836592	chr1	59858543	59858716	SINE|Alu|AluJr	+	chr1	59860282	59863868	HOOK1|ENST00000474695.1	+	59860282,59862783,59863824	59860328,59862877,59863868	0.526316
testis_male_adult_54_years	chr11	100715407	100715410	100715407	+	RAMPAGE_only	15	15	23	0.854036	4.152391	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.565217
testis_male_adult_54_years	chr8	57205899	57205942	57205923	+	RAMPAGE_only	60	61	127	4.715765	5.855809	chr8	57205914	57206586	LTR|ERV1|MER50	-	chr8	57193619	57220236	STRG.184749.3	+	57193619,57193884,57208831,57210675,57212877,57215108,57218269,57220110	57193689,57208668,57208928,57212583,57214932,57217976,57219623,57220236	0.968504
testis_male_adult_54_years	chr6	112098034	112098060	112098040	+	High_confidence	3	3	9	0.334188	2.750000	chr6	112097910	112098143	DNA|hAT-Charlie|MER20	+	chr6	112097582	112107319	STRG.149567.6	+	112097582,112099269,112100669	112098215,112099408,112107319	0.888889
testis_male_adult_54_years	chr1	212935570	212935574	212935573	+	RAMPAGE_only	3	3	7	0.259924	2.807355	chr1	212935382	212935980	LTR|ERVL|ERVL-E-int	-	chr1	212950519	212991585	VASH2|NM_024749.4	+	212950519,212951338,212961165,212972579,212973954,212988511	212950740,212951818,212961254,212972961,212974070,212991585	0.571429
testis_male_adult_54_years	chr4	125651362	125651363	125651362	-	High_confidence	49	49	53	1.967997	5.147820	chr4	125650959	125652294	LTR|ERV1|LTR12C	-	chr4	125650892	125651347	STRG.102272.1	-	125650892	125651347	0.716981
testis_male_adult_54_years	chrX	147937471	147937575	147937542	+	RAMPAGE_only	10	10	41	1.522412	4.762815	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.560976
testis_male_adult_54_years	chr8	64240481	64240525	64240481	-	High_confidence	2	3	11	0.408452	3.459432	chr8	64240097	64246124	LINE|L1|L1PA3	+	chr8	63728773	64240506	AC022639.1|ENST00000524360.5	-	63728773,63848896,63895497,64133447,64230555,64240439	63729008,63848995,63895549,64133514,64230616,64240506	0.545455
testis_male_adult_54_years	chr7	134527596	134527597	134527596	+	High_confidence	7	7	7	0.259924	2.521641	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	1.000000
testis_male_adult_54_years	chr4	31996374	31996388	31996387	-	High_confidence	3	4	8	0.297056	2.807355	chr4	31996206	31997789	LTR|ERV1|LTR12C	+	chr4	31995858	31996764	STRG.92588.1	-	31995858	31996764	0.625000
testis_male_adult_54_years	chr15	74155115	74155146	74155133	-	High_confidence	38	39	86	3.193353	5.207105	chr15	74154862	74155161	SINE|Alu|AluJb	-	chr15	74152925	74155126	STRG.297106.1	-	74152925,74155028	74153205,74155126	0.837209
testis_male_adult_54_years	chr20	57959724	57959759	57959740	+	High_confidence	5	5	28	1.039696	4.310443	chr20	57959594	57960006	LTR|ERVL-MaLR|MLT1C	+	chr20	57959759	57960496	STRG.346771.1	+	57959759	57960496	0.928571
testis_male_adult_54_years	chr16	68527836	68527877	68527836	+	High_confidence	123	123	199	7.389270	5.824961	chr16	68526564	68528236	LTR|ERV1|LTR12C	+	chr16	68527821	68558101	STRG.308893.10	+	68527821,68529269,68533697,68557997	68528272,68530534,68533855,68558101	0.974874
testis_male_adult_54_years	chr3	55367906	55367937	55367906	-	High_confidence	17	18	60	2.227921	5.253600	chr3	55367691	55367952	LTR|ERVL-MaLR|MLT1K	+	chr3	55356468	55367917	STRG.67993.1	-	55356468,55367499	55356514,55367917	0.866667
testis_male_adult_54_years	chr16	55586946	55586950	55586946	-	High_confidence	13	13	20	0.742640	4.142664	chr16	55586655	55587142	LTR|ERV1|LTR12B	-	chr16	55586557	55586994	STRG.307034.1	-	55586557	55586994	0.650000
testis_male_adult_54_years	chr17	5619420	5619424	5619423	-	High_confidence	21	23	35	1.299620	4.900712	chr17	5619250	5619612	LTR|ERVL-MaLR|THE1C	-	chr17	5584016	5619424	NLRP1|ENST00000572143.1	-	5584016,5619330	5584500,5619424	0.571429
testis_male_adult_54_years	chr5	160199150	160199156	160199150	+	High_confidence	7	7	14	0.519848	3.521641	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	1.000000
testis_male_adult_54_years	chr5	56488457	56488506	56488505	+	High_confidence	47	47	170	6.312442	5.488508	chr5	56487623	56488939	LTR|ERV1|LTR12C	+	chr5	56488463	56491642	STRG.117762.1	+	56488463,56491230	56489135,56491642	0.976471
testis_male_adult_54_years	chr15	92572564	92572565	92572564	-	High_confidence	6	6	6	0.222792	2.584963	chr15	92572502	92572996	LTR|ERVL-MaLR|MLT1D	+	chr15	92567817	92572263	LINC00930|NR_021493.1	-	92567817,92570202,92570557,92571185	92568291,92570273,92570696,92572263	0.500000
testis_male_adult_54_years	chr2	159428326	159428357	159428356	-	RAMPAGE_only	40	42	78	2.896297	5.763243	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.679487
testis_male_adult_54_years	chr3	11604375	11604403	11604402	-	High_confidence	3	3	14	0.519848	3.700440	chr3	11604225	11604413	SINE|MIR|MIR3	-	chr3	11556066	11604581	VGLL4|NM_001284391.1	-	11556066,11559331,11564796,11601832,11604323	11558827,11559455,11565019,11602022,11604581	0.928571
testis_male_adult_54_years	chr10	133369927	133370017	133370016	-	RAMPAGE_only	11	16	68	2.524977	5.298511	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
testis_male_adult_54_years	chr18	77993726	77993756	77993726	-	High_confidence	16	16	38	1.411016	4.892407	chr18	77993549	77993903	LTR|ERVL-MaLR|THE1B	-	chr18	77992721	77993899	STRG.330538.3	-	77992721	77993899	0.552632
testis_male_adult_54_years	chr1	144140513	144140579	144140554	-	RAMPAGE_only	6	6	72	2.673505	5.284593	chr1	144140287	144140984	LINE|L1|L1MEd	-	chr1	144136598	144142855	STRG.15889.2	-	144136598,144137727	144137700,144142855	0.986111
testis_male_adult_54_years	chr3	9792225	9792255	9792225	-	High_confidence	4	4	15	0.556980	3.664498	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.733333
testis_male_adult_54_years	chr15	77963576	77963623	77963608	-	High_confidence	6	7	27	1.002564	4.384517	chr15	77963557	77963934	LTR|ERVL|MER77B	+	chr15	77963003	77963610	STRG.297636.2	-	77963003	77963610	0.740741
testis_male_adult_54_years	chr18	23576944	23576948	23576947	-	High_confidence	53	54	99	3.676069	5.203272	chr18	23576532	23578195	LTR|ERV1|LTR12C	-	chr18	23573451	23576947	NPC1|ENST00000587223.1	-	23573451,23576480	23573574,23576947	0.959596
testis_male_adult_54_years	chr7	101349485	101349486	101349485	+	High_confidence	236	239	251	9.320135	5.239435	chr7	101348393	101349869	LTR|ERV1|LTR12C	+	chr7	101349496	101350162	STRG.170183.1	+	101349496	101350162	0.960159
testis_male_adult_54_years	chr8	78750265	78750290	78750281	-	High_confidence	51	55	147	5.458406	6.290350	chr8	78750042	78750541	LINE|L1|L1MC1	+	chr8	78732028	78750280	STRG.187236.3	-	78732028,78736473,78738503,78740001,78749523	78733832,78736527,78738635,78740082,78750280	0.768707
testis_male_adult_54_years	chr3	31709154	31709166	31709154	-	High_confidence	82	84	208	7.723458	5.719157	chr3	31709037	31709243	LINE|RTE-BovB|MamRTE1	-	chr3	31702375	31709164	OSBPL10|ENST00000490009.1	-	31702375,31708714	31702508,31709164	0.903846
testis_male_adult_54_years	chr9	88077997	88078022	88077997	+	High_confidence	3	3	7	0.259924	2.521641	chr9	88077653	88078060	LTR|ERVL-MaLR|MLT1A	-	chr9	88078006	88078480	STRG.205773.1	+	88078006	88078480	0.571429
testis_male_adult_54_years	chr1	160263340	160263398	160263366	-	High_confidence	11	19	69	2.562109	5.107622	chr1	160263341	160263646	SINE|Alu|AluSz	+	chr1	160215714	160262560	DCAF8|NM_015726.3	-	160215714,160218323,160218848,160222650,160224441,160225061,160225590,160231296,160237134,160238606,160239696,160243959,160261284,160262448	160217708,160218440,160218968,160222781,160224549,160225119,160225663,160231407,160237229,160238747,160240370,160244034,160261358,160262560	0.956522
testis_male_adult_54_years	chr5	126394514	126394549	126394514	-	High_confidence	3	3	15	0.556980	3.807355	chr5	126394298	126394535	LINE|CR1|L3	+	chr5	126389303	126394529	STRG.126891.1	-	126389303,126393552,126394417	126389448,126393630,126394529	0.666667
testis_male_adult_54_years	chr7	91050683	91050726	91050719	+	RAMPAGE_only	6	6	20	0.742640	4.221928	chr7	91050645	91050863	LTR|ERVL-MaLR|MSTB	-	chr7	90709815	91210589	CDK14|ENST00000436577.3	+	90709815,90726566,90790572,90863174,90899290,90917600,90955696,90984147,91045896,91079431,91112541,91118064,91207164	90709957,90726812,90790652,90863269,90899353,90917724,90955817,90984241,91045960,91079480,91112681,91118208,91210589	0.500000
testis_male_adult_54_years	chr4	6509768	6509793	6509792	-	High_confidence	3	3	9	0.334188	2.947703	chr4	6509723	6509846	SINE|MIR|MIR	+	chr4	6508845	6509716	STRG.88454.1	-	6508845	6509716	0.666667
testis_male_adult_54_years	chr13	48444815	48444816	48444815	+	High_confidence	6	6	6	0.222792	2.584963	chr13	48444740	48444914	LTR|ERVL|MER21A	-	chr13	48444827	48456307	RB1|ENST00000480491.1	+	48444827,48452992,48456203	48445221,48453111,48456307	0.833333
testis_male_adult_54_years	chr1	189149602	189149647	189149646	+	High_confidence	29	30	158	5.866858	6.009496	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	189149657	189389947	STRG.21183.1	+	189149657,189150541,189307728,189380805,189389824	189149876,189150759,189307878,189380921,189389947	0.810127
testis_male_adult_54_years	chr12	105353510	105353545	105353510	+	High_confidence	3	3	18	0.668376	3.836592	chr12	105353069	105353608	LTR|ERVL-MaLR|MLT1K	-	chr12	105353508	105371203	C12orf75|ENST00000548336.1	+	105353508,105365806,105366616,105367471,105370633	105353586,105365842,105366696,105367509,105371203	0.888889
testis_male_adult_54_years	chr2	121650379	121650380	121650379	+	High_confidence	5	5	7	0.259924	2.807355	chr2	121650281	121650581	SINE|Alu|AluJb	-	chr2	121650081	121651535	NIFK-AS1|ENST00000447668.2	+	121650081,121650467	121650381,121651535	0.857143
testis_male_adult_54_years	chr12	95484827	95484836	95484835	+	High_confidence	10	17	29	1.076828	4.323161	chr12	95484215	95484994	LINE|RTE-X|L4_A_Mam	+	chr12	95484793	95495149	METAP2|ENST00000549808.1	+	95484793,95485878,95494055,95494956	95484873,95485981,95494217,95495149	0.827586
testis_male_adult_54_years	chr22	24011756	24011757	24011756	+	High_confidence	70	70	73	2.710637	5.241584	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24056304	STRG.354040.13	+	24011417,24035443,24036088,24038347,24041138,24049090,24050824,24054872,24056191	24011913,24035520,24036181,24038461,24043084,24049220,24050974,24055159,24056304	0.945205
testis_male_adult_54_years	chr2	146837737	146837771	146837748	+	High_confidence	30	33	100	3.713201	5.927117	chr2	146836468	146837802	LTR|ERVL-MaLR|MLT1H-int	+	chr2	146837748	146850310	LINC01911|ENST00000450667.1	+	146837748,146838039,146846628,146848248,146849144,146850255	146837811,146838205,146846818,146848411,146849313,146850310	0.620000
testis_male_adult_54_years	chr9	120472037	120472038	120472037	-	RAMPAGE_only	4	6	7	0.259924	2.807355	chr9	120471976	120472122	LINE|L1|L1ME4a	-	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.714286
testis_male_adult_54_years	chr16	67262275	67262287	67262286	+	RAMPAGE_only	3	3	9	0.334188	2.947703	chr16	67262044	67262371	LINE|CR1|CR1-3_Croc	-	chr16	67252808	67270980	SLC9A5|ENST00000566626.1	+	67252808,67255020,67264351,67265039,67266087,67270737	67252844,67255184,67264522,67265106,67266225,67270980	1.000000
testis_male_adult_54_years	chr22	37855555	37855587	37855586	+	RAMPAGE_only	2	2	7	0.259924	2.584963	chr22	37855622	37855711	SINE|tRNA|LFSINE_Vert	+	chr22	37849480	37888630	EIF3L|ENST00000406934.5	+	37849480,37851279,37858678,37862968,37863271,37870175,37874369,37875840,37877673,37886764,37888425	37850063,37851490,37858740,37863038,37863345,37870347,37874524,37876011,37878171,37886845,37888630	0.571429
testis_male_adult_54_years	chr6	157830617	157830662	157830639	+	RAMPAGE_only	6	8	50	1.856601	5.216551	chr6	157830586	157830766	DNA|hAT-Charlie|MER3	+	chr6	157827607	157945077	STRG.155393.3	+	157827607,157867546,157873101,157875050,157896826,157901897,157906127,157921530,157927110,157928598,157932194,157935963,157937433,157938632,157940882,157942790	157830756,157867633,157873176,157875176,157896998,157902045,157910025,157921661,157927214,157928702,157932272,157936040,157937523,157938747,157940974,157945077	0.940000
testis_male_adult_54_years	chr7	76479006	76479025	76479024	+	RAMPAGE_only	21	23	47	1.745205	4.559116	chr7	76478971	76479057	LINE|L2|L2b	-	chr7	76480509	76505995	DTX2|NM_001102596.1	+	76480509,76482507,76492152,76500440,76502297,76503425,76504355,76505373	76480777,76483147,76492253,76500520,76502456,76503587,76504445,76505995	0.914894
testis_male_adult_54_years	chr17	61952970	61952990	61952970	-	RAMPAGE_only	1	1	7	0.259924	2.584963	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.857143
testis_male_adult_54_years	chr10	80586714	80586715	80586714	+	High_confidence	103	105	111	4.121653	4.872500	chr10	80585694	80587129	LTR|ERV1|LTR12C	+	chr10	80586693	80587547	STRG.222089.1	+	80586693	80587547	0.936937
testis_male_adult_54_years	chr3	109071464	109071492	109071464	-	RAMPAGE_only	11	11	24	0.891168	4.418296	chr3	109071439	109071996	LTR|ERVL|MER68B	-	chr3	108958844	109118103	MORC1|ENST00000483760.1	-	108958844,108963413,108969668,108971329,108979514,108984715,108986879,109000556,109004816,109005069,109027750,109032719,109035339,109054727,109057342,109059805,109061987,109063151,109069631,109093435,109094908,109099357,109100416,109103848,109110748,109114383,109117994	108959120,108963608,108969722,108971402,108979667,108984782,108986949,109000658,109004888,109005315,109027889,109032825,109035468,109054882,109057486,109059870,109062058,109063231,109069757,109093541,109095068,109099466,109100507,109103917,109110783,109114437,109118103	0.666667
testis_male_adult_54_years	chr10	4824729	4824735	4824729	+	RAMPAGE_only	2	2	7	0.259924	2.807355	chr10	4824741	4825074	LINE|L2|L2a	+	chr10	4826176	4848062	AKR1E2|ENST00000474119.5	+	4826176,4830674,4833349,4835674,4837458,4839728,4841784,4842420,4847147,4847487	4826277,4830842,4833466,4835809,4837581,4839826,4841857,4842504,4847299,4848062	0.571429
testis_male_adult_54_years	chr15	44394315	44394359	44394326	+	RAMPAGE_only	17	18	90	3.341881	4.630421	chr15	44394289	44394395	DNA|TcMar-Tigger|Tigger3c	-	chr15	44288732	44415729	CASC4|ENST00000650436.1	+	44288732,44289158,44319406,44322964,44328684,44331987,44337762,44338236,44379689,44380805,44402886,44413335	44288904,44289356,44319553,44323019,44328787,44332078,44337907,44338317,44379788,44380976,44403054,44415729	0.922222
testis_male_adult_54_years	chr7	132260840	132260851	132260850	+	High_confidence	120	122	196	7.277874	5.348229	chr7	132260684	132261052	LINE|L1|L1MC1	+	chr7	132260857	132266270	STRG.173668.1	+	132260857,132261360,132264073,132266258	132260902,132261568,132264301,132266270	0.826531
testis_male_adult_54_years	chrX	9535003	9535004	9535003	+	RAMPAGE_only	6	6	9	0.334188	3.169925	chrX	9534975	9535052	SINE|MIR|MIRb	+	chrX	9531005	9719723	TBL1X|ENST00000646640.1	+	9531005,9636281,9640272,9653544,9654214,9684042,9688016,9691578,9692112,9693148,9693321,9697368,9704992,9709247,9709632,9711610,9714901,9716219	9531088,9637918,9640360,9653689,9654322,9684188,9688275,9691711,9692254,9693212,9693419,9697429,9705114,9709322,9709760,9711776,9715003,9719723	0.666667
testis_male_adult_54_years	chr12	31117778	31117864	31117778	-	High_confidence	9	9	67	2.487845	4.927811	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.865672
testis_male_adult_54_years	chr3	48924764	48924765	48924764	+	High_confidence	4	6	7	0.259924	2.584963	chr3	48924715	48924993	SINE|Alu|AluSc8	-	chr3	48924715	48945181	ARIH2|ENST00000463204.5	+	48924715,48927461,48945135	48924839,48927813,48945181	0.714286
testis_male_adult_54_years	chr19	44105184	44105228	44105213	+	High_confidence	7	8	33	1.225356	4.453189	chr19	44104961	44105295	LTR|ERVL|MER77B	-	chr19	44105332	44108326	ZNF224|ENST00000591551.1	+	44105332	44108326	0.969697
testis_male_adult_54_years	chr12	55124798	55124804	55124798	+	RAMPAGE_only	6	6	10	0.371320	3.169925	chr12	55124538	55125051	LTR|ERV1|LTR12_	+	chr12	55126804	55159642	STRG.253658.1	+	55126804,55158833	55126911,55159642	0.500000
testis_male_adult_54_years	chr13	47904412	47904481	47904480	-	RAMPAGE_only	5	5	23	0.854036	4.175736	chr13	47904226	47904710	LTR|ERV1|MER57B2	+	chr13	47903527	47907240	STRG.267955.1	-	47903527,47907017	47905398,47907240	0.956522
testis_male_adult_54_years	chr17	69325719	69325763	69325747	-	RAMPAGE_only	3	3	9	0.334188	3.000000	chr17	69325641	69325831	SINE|Alu|AluJo	+	chr17	69306762	69327090	ABCA5|ENST00000587607.5	-	69306762,69308279,69309261,69313091,69314313,69327051	69306954,69308368,69309423,69313296,69314430,69327090	0.555556
testis_male_adult_54_years	chr7	154059531	154059568	154059531	-	High_confidence	41	42	91	3.379013	6.045793	chr7	154059367	154059965	LTR|ERV1|HERVE-int	+	chr7	154055584	154059561	AC006019.1|ENST00000425591.1	-	154055584,154057432	154055925,154059561	0.956044
testis_male_adult_54_years	chr18	46555352	46555373	46555372	-	High_confidence	21	21	33	1.225356	4.862576	chr18	46555174	46555380	SINE|MIR|MIR3	-	chr18	46529299	46555371	LOXHD1|ENST00000536111.1	-	46529299,46533161,46533705,46534334,46538155,46541775,46542726,46545316,46546894,46555124	46529331,46533324,46533759,46534451,46538337,46541940,46542855,46545421,46547058,46555371	0.575758
testis_male_adult_54_years	chr5	149928556	149928599	149928556	-	RAMPAGE_only	11	12	40	1.485280	4.580023	chr5	149928231	149928535	SINE|Alu|AluSg	-	chr5	149857954	149944793	PDE6A|ENST00000617647.4	-	149857954,149859891,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647,149907311,149914942,149921634,149931027,149944199	149858530,149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149903695,149907378,149915007,149921709,149931168,149944793	0.675000
testis_male_adult_54_years	chr13	93455158	93455215	93455182	+	High_confidence	99	101	383	14.221560	5.202924	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93454655	94029938	STRG.274089.3	+	93454655,93545262,93830153,94027728	93455438,93545421,93830545,94029938	0.921671
testis_male_adult_54_years	chr7	10077669	10077670	10077669	-	RAMPAGE_only	6	8	8	0.297056	3.000000	chr7	10077478	10077687	LINE|L2|L2	+	chr7	10075776	10080884	STRG.158276.1	-	10075776	10080884	1.000000
testis_male_adult_54_years	chr2	174199693	174199726	174199693	-	RAMPAGE_only	12	12	27	1.002564	4.403856	chr2	174198784	174200263	DNA|hAT-Charlie|Charlie1a	+	chr2	174082009	174217946	OLA1|ENST00000429575.1	-	174082009,174123179,174123594,174141824,174217871	174082064,174123277,174123675,174142000,174217946	0.814815
testis_male_adult_54_years	chr1	94992293	94992339	94992338	+	High_confidence	17	17	45	1.670940	5.058984	chr1	94991255	94992356	DNA|TcMar-Tigger|Tigger3b	-	chr1	94992333	94992615	STRG.12949.1	+	94992333	94992615	0.644444
testis_male_adult_54_years	chr22	38168075	38168093	38168089	-	High_confidence	5	5	21	0.779772	3.880180	chr22	38167963	38168270	LINE|L2|L2b	+	chr22	38143236	38168090	PLA2G6|ENST00000452972.1	-	38143236,38144895,38145437,38167917	38143288,38144978,38145653,38168090	0.857143
testis_male_adult_54_years	chr3	113828166	113828172	113828171	+	High_confidence	38	39	61	2.265053	4.656838	chr3	113827983	113828492	LTR|ERVL-MaLR|MLT1F	+	chr3	113828181	113945560	GRAMD1C|ENST00000479212.5	+	113828181,113844502,113869506,113875483,113876164,113882751,113901030,113904139,113908957,113913072,113915700,113930713,113933510,113934431,113936265,113938085,113939885,113940239,113945397	113828279,113844649,113869591,113875587,113876260,113882832,113901146,113904272,113909120,113913160,113915838,113930832,113933653,113934535,113936442,113938143,113939996,113940345,113945560	0.918033
testis_male_adult_54_years	chr21	22984472	22984488	22984483	-	High_confidence	47	54	121	4.492973	5.462796	chr21	22984210	22984555	LTR|ERVL-MaLR|THE1D	-	chr21	22961364	22984758	STRG.349394.1	-	22961364,22984292	22966348,22984758	0.702479
testis_male_adult_54_years	chr3	51496768	51496779	51496777	-	RAMPAGE_only	5	7	14	0.519848	3.807355	chr3	51496535	51496729	SINE|MIR|MIRb	-	chr3	51395866	51499994	DCAF1|ENST00000423656.5	-	51395866,51398734,51403142,51412378,51412992,51413281,51413949,51414623,51416786,51418115,51418677,51419733,51422306,51427371,51429260,51430032,51433105,51440969,51441384,51443765,51463113,51466802,51470928,51483718,51499872	51397124,51398827,51403395,51412480,51413066,51413386,51414043,51414857,51416871,51418198,51418876,51420997,51422431,51427541,51429470,51430212,51433264,51441071,51441897,51443903,51463227,51466876,51471005,51483836,51499994	0.928571
testis_male_adult_54_years	chr6	21140900	21140936	21140914	-	High_confidence	2	3	10	0.371320	3.169925	chr6	21140775	21141127	LTR|ERVL-MaLR|THE1A	-	chr6	21138260	21140916	STRG.137799.1	-	21138260,21139661,21140851	21138976,21139847,21140916	0.800000
testis_male_adult_54_years	chr18	24099304	24099316	24099313	-	High_confidence	15	16	76	2.822033	5.823392	chr18	24099157	24099497	LTR|ERVL-MaLR|MLT1A0	-	chr18	24076793	24099320	AC090772.2|ENST00000578443.1	-	24076793,24099222	24077259,24099320	0.605263
testis_male_adult_54_years	chr2	218287266	218287280	218287279	-	High_confidence	22	22	50	1.856601	5.117475	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.780000
testis_male_adult_54_years	chr9	92536703	92536736	92536703	-	High_confidence	4	4	12	0.445584	3.277613	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.916667
testis_male_adult_54_years	chr20	55745030	55745031	55745030	-	High_confidence	451	474	557	20.682530	7.739584	chr20	55744850	55745266	LTR|ERVL|MER70B	-	chr20	55581675	55745108	STRG.346614.2	-	55581675,55626277,55631057,55667501,55724574,55744909	55581795,55626506,55631200,55667626,55724687,55745108	0.556553
testis_male_adult_54_years	chr11	14891219	14891220	14891219	-	High_confidence	7	7	7	0.259924	2.807355	chr11	14891179	14891312	SINE|MIR|MIR	+	chr11	14880336	14891492	STRG.230816.10	-	14880336,14885775,14890748	14880768,14890469,14891492	1.000000
testis_male_adult_54_years	chr15	83012630	83012643	83012630	+	High_confidence	8	8	13	0.482716	3.026987	chr15	83012170	83013331	LINE|L2|L2c	-	chr15	83012660	83061845	AC024270.4|ENST00000570202.1	+	83012660,83061486	83012722,83061845	0.923077
testis_male_adult_54_years	chr1	67955395	67955427	67955411	+	High_confidence	4	5	19	0.705508	3.794653	chr1	67955124	67955742	LINE|L2|L2	+	chr1	67955404	68026762	GNG12-AS1|ENST00000414904.1	+	67955404,67956155,68024518,68026573	67955784,67956262,68024638,68026762	0.894737
testis_male_adult_54_years	chr2	200174759	200174797	200174796	-	High_confidence	3	4	18	0.668376	3.852169	chr2	200174601	200175916	LTR|ERV1|LTR12C	+	chr2	199971701	200175210	STRG.55715.1	-	199971701,200010690,200174569	199972044,200010896,200175210	0.722222
testis_male_adult_54_years	chr9	119869757	119869758	119869757	-	High_confidence	110	111	113	4.195917	4.946400	chr9	119869342	119870847	LTR|ERV1|LTR12C	-	chr9	119868565	119869751	STRG.209745.1	-	119868565	119869751	0.973451
testis_male_adult_54_years	chr4	73326049	73326052	73326049	+	High_confidence	36	37	60	2.227921	4.541355	chr4	73325854	73326478	LTR|ERV1|LTR12_	+	chr4	73325937	73358175	STRG.96061.1	+	73325937,73357611	73326496,73358175	0.816667
testis_male_adult_54_years	chr5	163493996	163494034	163494033	-	High_confidence	9	12	23	0.854036	4.201841	chr5	163492466	163494873	LTR|ERVL|ERVL-B4-int	-	chr5	163483064	163494034	HMMR-AS1|ENST00000521666.1	-	163483064,163493442	163483272,163494034	0.652174
testis_male_adult_54_years	chr12	121993552	121993561	121993558	+	RAMPAGE_only	3	3	11	0.408452	3.121928	chr12	121993005	121993967	Retroposon|SVA|SVA_F	+	chr12	121996885	122003807	WDR66|ENST00000428465.2	+	121996885,122001496,122003651	121999944,122001598,122003807	0.727273
testis_male_adult_54_years	chr17	35798083	35798093	35798092	+	RAMPAGE_only	4	4	10	0.371320	3.169925	chr17	35797945	35798122	SINE|Alu|AluJb	-	chr17	35809454	35847242	TAF15|NM_139215.2	+	35809454,35817715,35820023,35820163,35820331,35822639,35824077,35833906,35834565,35836131,35838423,35842366,35844076,35844279,35844476,35846905	35809576,35817755,35820075,35820248,35820437,35822833,35824198,35833941,35834598,35836241,35838553,35842459,35844158,35844368,35845038,35847242	0.700000
testis_male_adult_54_years	chr3	49200357	49200400	49200399	+	High_confidence	3	3	17	0.631244	3.625000	chr3	49200192	49200475	SINE|Alu|AluSx	+	chr3	49199616	49257723	STRG.67543.7	+	49199616,49209767,49236547,49241225,49244403,49244645,49255389,49256133	49209565,49211836,49236722,49241389,49244452,49244733,49255493,49257723	0.941176
testis_male_adult_54_years	chr2	131639134	131639148	131639144	+	RAMPAGE_only	2	2	7	0.259924	2.521641	chr2	131639102	131639588	LINE|L1|L1ME4c	+	chr2	131593426	131676380	STRG.46606.29	+	131593426,131594046,131597047,131600004,131601422,131604017,131609381,131611132,131612985,131625937	131593522,131596888,131597221,131600111,131601556,131604088,131609452,131611709,131613103,131676380	1.000000
testis_male_adult_54_years	chr3	191808686	191808707	191808695	+	High_confidence	13	15	36	1.336752	4.852169	chr3	191807887	191812760	LINE|L1|L1MA3	+	chr3	191808703	191809379	STRG.86519.1	+	191808703	191809379	0.888889
testis_male_adult_54_years	chr8	29002434	29002443	29002436	+	RAMPAGE_only	24	35	53	1.967997	5.196648	chr8	29001987	29002520	LTR|ERVL-MaLR|MLT1F	-	chr8	28963862	29051549	HMBOX1|ENST00000524238.3	+	28963862,28970042,28980070,29009071,29018759,29045360,29047357,29048956,29049289,29051017	28963890,28970519,28980156,29009182,29018913,29045443,29047453,29049048,29049361,29051549	0.603774
testis_male_adult_54_years	chr2	232764424	232764463	232764443	+	High_confidence	166	249	819	30.411117	7.251438	chr2	232764038	232764765	LINE|CR1|L3	+	chr2	232764443	232790850	GIGYF2|ENST00000445650.5	+	232764443,232765891,232787149,232790697	232764610,232765979,232787329,232790850	0.882784
testis_male_adult_54_years	chr12	123997582	123997585	123997582	-	High_confidence	127	147	243	9.023079	5.577161	chr12	123997318	123997758	LTR|ERVL-MaLR|MLT1C	-	chr12	123997363	123997613	STRG.262900.1	-	123997363	123997613	0.876543
testis_male_adult_54_years	chr16	46706140	46706168	46706140	-	RAMPAGE_only	3	3	8	0.297056	2.521641	chr16	46706075	46706290	DNA|TcMar-Tigger|Tigger2a	-	chr16	46702216	46738137	STRG.306067.1	-	46702216,46709538,46710636,46712647,46721122,46727235,46729023,46729593,46730592,46732207,46737710	46707763,46709671,46710789,46712776,46721193,46727377,46729133,46729687,46730698,46732668,46738137	0.875000
testis_male_adult_54_years	chr19	48868595	48868617	48868613	-	High_confidence	456	528	2004	74.412550	7.683485	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.990519
testis_male_adult_54_years	chr13	81539905	81539930	81539905	+	High_confidence	4	4	21	0.779772	4.247928	chr13	81539785	81540120	LTR|ERVL-MaLR|MLT1B	+	chr13	81539895	81541521	STRG.272444.1	+	81539895	81541521	0.523810
testis_male_adult_54_years	chr13	77818196	77818207	77818205	+	High_confidence	19	35	60	2.227921	5.170507	chr13	77817983	77818295	LINE|L2|L2c	-	chr13	77818936	77908442	EDNRB-AS1|NR_103853.1	+	77818936,77828242,77829027,77830552,77833364,77833732,77907691	77819010,77828415,77829102,77830603,77833427,77834990,77908442	0.616667
testis_male_adult_54_years	chr16	68973065	68973066	68973065	+	High_confidence	7	7	8	0.297056	2.807355	chr16	68972577	68973226	LINE|L2|L2a	-	chr16	68973039	69083515	TANGO6|ENST00000562000.5	+	68973039,68974027,69022827,69040307,69083484	68973143,68974168,69022979,69040421,69083515	0.625000
testis_male_adult_54_years	chr15	75063824	75063825	75063824	+	High_confidence	31	34	42	1.559544	4.765731	chr15	75063486	75063944	LTR|ERV1|LTR71A	+	chr15	75063923	75065148	STRG.297282.1	+	75063923	75065148	0.928571
testis_male_adult_54_years	chr2	161546765	161546776	161546765	-	High_confidence	25	28	46	1.708073	4.924969	chr2	161546595	161546960	LTR|ERVL-MaLR|MSTA	-	chr2	161529524	161546756	STRG.50022.1	-	161529524,161545880	161530961,161546756	0.847826
testis_male_adult_54_years	chr13	112333602	112333632	112333602	-	High_confidence	6	6	25	0.928300	4.243856	chr13	112333500	112333688	DNA|TcMar-Tigger|Tigger3b	-	chr13	112330773	112333647	STRG.276486.2	-	112330773,112332612,112333260	112331264,112332719,112333647	0.600000
testis_male_adult_54_years	chr1	205728934	205728935	205728934	+	RAMPAGE_only	7	7	7	0.259924	2.521641	chr1	205728925	205728966	SINE|Alu|Alu	-	chr1	205813323	205867770	STRG.23521.1	+	205813323,205853787,205858142	205813585,205853874,205867770	1.000000
testis_male_adult_54_years	chr12	131981481	131981492	131981481	+	RAMPAGE_only	4	4	8	0.297056	3.000000	chr12	131981246	131981500	LINE|L1|L1MD	-	chr12	131960584	132081102	EP400|ENST00000389562.6	+	131960584,131979693,131981488,131982092,131986513,131987704,131989963,131990635,131991406,131992172,131994866,132005076,132006111,132006699,132011497,132013008,132013489,132013776,132017534,132018209,132020048,132021078,132023776,132025645,132027436,132028016,132029700,132029988,132031952,132037681,132037952,132043303,132043644,132044176,132044670,132044799,132045318,132045726,132050322,132050598,132053145,132053342,132054973,132055098,132062109,132062465,132064667,132066773,132067361,132069494,132076515,132077400	131961954,131979793,131981596,131982478,131986807,131987890,131990104,131990714,131991456,131992230,131994956,132005184,132006302,132006877,132011634,132013178,132013664,132013913,132017721,132018376,132020218,132021321,132023941,132025804,132027531,132028288,132029903,132030158,132032149,132037793,132038096,132043462,132043728,132044311,132044715,132044953,132045560,132045900,132050459,132050655,132053224,132053597,132055019,132055208,132062323,132062701,132064886,132066969,132067486,132069641,132076593,132081102	0.500000
testis_male_adult_54_years	chrX	45615747	45615750	45615747	+	High_confidence	9	11	16	0.594112	3.625000	chrX	45615415	45616062	LTR|ERV1|LTR12	+	chrX	45615769	45616291	STRG.362380.1	+	45615769	45616291	0.937500
testis_male_adult_54_years	chr4	130376184	130376207	130376194	+	High_confidence	11	11	47	1.745205	4.758085	chr4	130376108	130376464	LTR|ERVL-MaLR|MLT1A0	+	chr4	130376228	130386371	LINC02479|ENST00000508942.1	+	130376228,130386072	130376559,130386371	0.893617
testis_male_adult_54_years	chr9	111643086	111643087	111643086	+	RAMPAGE_only	6	7	8	0.297056	2.500000	chr9	111642927	111643241	DNA?|DNA?|UCON74	+	chr9	111631385	111650953	STRG.209057.3	+	111631385,111642838,111647106,111649452	111631743,111643094,111647259,111650953	1.000000
testis_male_adult_54_years	chr16	74485805	74485821	74485812	-	RAMPAGE_only	2	2	9	0.334188	3.000000	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	0.888889
testis_male_adult_54_years	chr12	2335701	2335709	2335701	-	High_confidence	2	2	7	0.259924	2.584963	chr12	2335687	2335765	SINE|MIR|MIRc	+	chr12	2332860	2335702	AC005293.1|ENST00000648763.1	-	2332860,2333930,2335187	2333660,2334161,2335702	0.857143
testis_male_adult_54_years	chr22	40843003	40843025	40843003	-	RAMPAGE_only	7	7	25	0.928300	3.970176	chr22	40842870	40843130	SINE|Alu|AluJr	+	chr22	40830874	40844890	ST13|ENST00000413424.5	-	40830874,40832086,40832568,40835559,40835802,40840625,40844838	40830956,40832216,40832671,40835670,40835887,40840692,40844890	0.800000
testis_male_adult_54_years	chr8	110120854	110120857	110120854	+	High_confidence	16	20	38	1.411016	4.553652	chr8	110120639	110121179	LTR|ERV1|LTR12_	+	chr8	110120809	110121700	STRG.192119.1	+	110120809	110121700	0.868421
testis_male_adult_54_years	chr1	67141700	67141756	67141700	-	High_confidence	28	30	202	7.500666	6.259842	chr1	67141478	67141745	SINE|Alu|AluJr	+	chr1	67092947	67141930	STRG.8715.4	-	67092947,67096251,67103237,67111576,67115351,67125751,67127165,67131141,67141613	67093604,67096321,67103382,67111644,67115464,67125909,67127257,67131227,67141930	0.925743
testis_male_adult_54_years	chr1	153967486	153967517	153967486	+	High_confidence	12	15	43	1.596676	4.089889	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.860465
testis_male_adult_54_years	chr10	70425277	70425295	70425277	+	RAMPAGE_only	7	7	13	0.482716	3.392747	chr10	70424911	70425430	LTR|ERVL-MaLR|MLT1F1	-	chr10	70418146	70428618	STRG.220044.2	+	70418146,70419913,70421715	70418399,70420099,70428618	1.000000
testis_male_adult_54_years	chr6	8887955	8887956	8887955	+	High_confidence	16	17	18	0.668376	4.058814	chr6	8886985	8888269	LTR|ERV1|LTR12C	+	chr6	8887937	8993096	AL591485.1|ENST00000643761.1	+	8887937,8959855,8960706,8961458,8992164	8888526,8959950,8960815,8961564,8993096	0.777778
testis_male_adult_54_years	chr3	128870615	128870675	128870674	+	RAMPAGE_only	158	212	497	18.454610	5.914252	chr3	128870518	128870826	LTR|ERVL-MaLR|MLT1K	+	chr3	128869409	128872383	STRG.77529.1	+	128869409,128869865	128869781,128872383	0.997988
testis_male_adult_54_years	chr19	49539126	49539152	49539126	+	RAMPAGE_only	4	4	15	0.556980	3.521641	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49527617	49543638	RCN3|ENST00000270645.7	+	49527617,49528466,49534192,49537032,49539118,49542552,49543105	49528058,49528714,49534395,49537205,49539179,49542752,49543638	0.933333
testis_male_adult_54_years	chr3	166991027	166991058	166991057	-	High_confidence	38	39	73	2.710637	5.661356	chr3	166990625	166991089	LTR|ERV1|MER50B	+	chr3	166981682	166991037	STRG.82605.1	-	166981682,166987997,166990272	166981788,166988213,166991037	0.712329
testis_male_adult_54_years	chr22	23705502	23705514	23705513	-	RAMPAGE_only	6	6	19	0.705508	4.247928	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	1.000000
testis_male_adult_54_years	chr3	165071907	165071931	165071907	-	RAMPAGE_only	9	9	34	1.262488	4.310805	chr3	165071563	165071935	LTR|ERVL-MaLR|MLT1B	+	chr3	164978897	165078495	SI|ENST00000264382.7	-	164978897,164982242,164983001,164987137,164991352,164992176,164992312,164994256,164996534,164996737,164998539,165006815,165007910,165009278,165012979,165015122,165015951,165017547,165017760,165017969,165019601,165021228,165023569,165030711,165032521,165033394,165036388,165037899,165039077,165039886,165040939,165043058,165046840,165049126,165049790,165055193,165058962,165059167,165059901,165062370,165063441,165065260,165067339,165068721,165069077,165074530,165075894,165078432	164979430,164982410,164983051,164987226,164991477,164992233,164992397,164994405,164996651,164996772,164998673,165006954,165007998,165009395,165013042,165015233,165016080,165017673,165017873,165018066,165019770,165021383,165023776,165030867,165032692,165033444,165036477,165038024,165039134,165039971,165041094,165043175,165047012,165049244,165049875,165055307,165059082,165059299,165060027,165062483,165063541,165065432,165067491,165068831,165069195,165074667,165076012,165078495	0.823529
testis_male_adult_54_years	chr12	97709572	97709602	97709579	+	High_confidence	3	3	15	0.556980	3.807355	chr12	97709190	97709959	LINE|L1|L1MC3	+	chr12	97709605	97713584	STRG.259593.1	+	97709605,97712087	97709682,97713584	0.733333
testis_male_adult_54_years	chr8	38850667	38850729	38850667	+	RAMPAGE_only	5	5	21	0.779772	4.070656	chr8	38850509	38850800	SINE|Alu|AluJb	+	chr8	38839283	38853028	TACC1|ENST00000519093.5	+	38839283,38842286,38843288,38846698,38847954	38840267,38842447,38843395,38846819,38853028	1.000000
testis_male_adult_54_years	chr15	75198888	75198939	75198916	+	High_confidence	37	38	196	7.277874	6.715134	chr15	75198623	75199037	LTR|ERV1|MER51A	-	chr15	75198891	75212169	C15orf39|ENST00000360639.6	+	75198891,75205998,75210748	75199161,75208824,75212169	0.836735
testis_male_adult_54_years	chr12	84154427	84154449	84154436	+	High_confidence	33	34	104	3.861729	5.519016	chr12	84154403	84155685	LTR|ERV1|LTR12C	-	chr12	84154277	84156081	STRG.257276.1	+	84154277	84156081	0.750000
testis_male_adult_54_years	chr7	18851387	18851391	18851390	+	High_confidence	9	11	17	0.631244	3.452820	chr7	18851203	18851570	LTR|ERVL-MaLR|THE1D	+	chr7	18851399	18996343	HDAC9|ENST00000496026.1	+	18851399,18874477,18935808,18954145,18975805,18996022	18851452,18874596,18935942,18954230,18975953,18996343	0.705882
testis_male_adult_54_years	chr5	82031625	82031635	82031625	+	RAMPAGE_only	5	5	10	0.371320	3.169925	chr5	82031270	82032036	LTR|ERVL|LTR101_Mam	+	chr5	81972260	82253431	ATG10|ENST00000504770.5	+	81972260,81987558,82058494,82164398,82178489,82242796,82252561,82253313	81972306,81987678,82058602,82164537,82178587,82242882,82252659,82253431	0.500000
testis_male_adult_54_years	chr15	34993629	34993632	34993631	+	High_confidence	7	10	14	0.519848	3.334679	chr15	34993360	34994087	LTR|ERV1|LTR8	-	chr15	34993645	35003221	AC114546.1|ENST00000560140.1	+	34993645,35003125	34994022,35003221	0.642857
testis_male_adult_54_years	chr3	181468449	181468450	181468449	-	High_confidence	16	17	21	0.779772	4.142664	chr3	181467665	181468496	LTR|ERVL|MER21C	-	chr3	181467292	181468436	STRG.85158.1	-	181467292	181468436	0.904762
testis_male_adult_54_years	chr12	1391546	1391550	1391546	+	RAMPAGE_only	4	4	10	0.371320	2.725481	chr12	1391070	1391914	LINE|L1|L1MDa	-	chr12	1408191	1445055	ERC1|ENST00000539802.2	+	1408191,1444561	1408247,1445055	0.600000
testis_male_adult_54_years	chr8	27593420	27593454	27593432	+	High_confidence	8	8	23	0.854036	3.708132	chr8	27593427	27593714	SINE|Alu|AluSx1	-	chr8	27593562	27594849	STRG.181893.1	+	27593562	27594849	0.739130
testis_male_adult_54_years	chr14	75970783	75970790	75970783	-	High_confidence	4	4	8	0.297056	2.807355	chr14	75970618	75970922	LINE|L2|L2b	+	chr14	75960860	75970790	TGFB3|ENST00000557493.1	-	75960860,75963315,75965587,75970678	75961076,75963487,75965695,75970790	0.625000
testis_male_adult_54_years	chr11	126297097	126297119	126297118	-	High_confidence	44	48	89	3.304749	4.454297	chr11	126297017	126297764	LINE|L1|L1ME3E	-	chr11	126294306	126297126	AP001318.2|ENST00000528876.1	-	126294306,126296967	126294656,126297126	0.887640
testis_male_adult_54_years	chr9	68634876	68634901	68634900	-	High_confidence	3	3	13	0.482716	2.918296	chr9	68634706	68635090	LTR|ERVL-MaLR|MLT1J2	-	chr9	68626358	68634792	STRG.203016.1	-	68626358,68634460,68634768	68627032,68634682,68634792	0.923077
testis_male_adult_54_years	chr10	10944228	10944229	10944228	-	RAMPAGE_only	4	4	6	0.222792	2.584963	chr10	10944135	10944287	LINE|L2|L2a	+	chr10	10934939	10936663	LINC00710|ENST00000441855.1	-	10934939,10936623	10935413,10936663	0.833333
testis_male_adult_54_years	chr16	10394013	10394145	10394144	+	RAMPAGE_only	4	4	28	1.039696	4.532665	chr16	10394060	10396245	LINE|L1|L1M4	+	chr16	10386060	10430672	STRG.303546.10	+	10386060,10387143,10387377,10419580,10428867,10430610	10386122,10387290,10414612,10419623,10429016,10430672	0.964286
testis_male_adult_54_years	chr14	81249964	81249965	81249964	-	RAMPAGE_only	7	7	10	0.371320	3.169925	chr14	81249639	81250202	LTR|ERVL-MaLR|MLT1G3	-	chr14	81197226	81221377	GTF2A1|ENST00000556268.1	-	81197226,81201593,81203899,81216412,81221143	81197484,81201658,81204104,81216514,81221377	0.700000
testis_male_adult_54_years	chr20	11878549	11878577	11878549	-	High_confidence	172	172	304	11.288131	6.631732	chr20	11878280	11878560	SINE|Alu|AluYc	-	chr20	11875745	11878602	STRG.341868.1	-	11875745	11878602	0.562500
testis_male_adult_54_years	chr19	49849806	49849830	49849818	-	RAMPAGE_only	8	8	35	1.299620	4.594672	chr19	49849775	49849953	LINE|L2|L2	+	chr19	49839226	49851057	PTOV1-AS1|ENST00000600742.1	-	49839226,49844315,49849009	49840076,49844598,49851057	0.942857
testis_male_adult_54_years	chr3	72664234	72664255	72664253	-	High_confidence	28	55	126	4.678633	5.860544	chr3	72664216	72664706	LTR|ERVL-MaLR|MLT1J	+	chr3	72663295	72664249	LOC105377162|NR_135531.1	-	72663295,72663929	72663567,72664249	0.944444
testis_male_adult_54_years	chr1	147507448	147507471	147507470	-	RAMPAGE_only	5	5	13	0.482716	3.584963	chr1	147507223	147507544	LINE|L2|L2a	+	chr1	147376306	147517875	STRG.16179.2	-	147376306,147384751,147470994,147506047,147515520,147516085	147384049,147384863,147478977,147514448,147515676,147517875	0.923077
testis_male_adult_54_years	chr14	94581929	94581946	94581945	+	High_confidence	27	30	64	2.376449	5.407837	chr14	94581782	94581952	DNA|hAT-Charlie|MER20	+	chr14	94581879	94587833	SERPINA5|ENST00000557598.1	+	94581879,94587345	94581998,94587833	0.625000
testis_male_adult_54_years	chr7	42888153	42888154	42888153	+	High_confidence	9	9	13	0.482716	3.251629	chr7	42888107	42888184	LTR|ERVL|MER54B	+	chr7	42888778	42889567	STRG.163265.1	+	42888778	42889567	0.846154
testis_male_adult_54_years	chr13	105730385	105730398	105730397	+	High_confidence	6	7	10	0.371320	3.321928	chr13	105730231	105730538	LINE|L2|L2	-	chr13	105729500	105731708	LINC00343|ENST00000414368.2	+	105729500,105730314,105731447	105729959,105730458,105731708	0.900000
testis_male_adult_54_years	chr6	30466940	30466946	30466940	-	High_confidence	6	8	16	0.594112	3.750000	chr6	30466865	30467010	SINE|Alu|AluSz	-	chr6	30466147	30466608	STRG.139679.1	-	30466147	30466608	0.687500
testis_male_adult_54_years	chr12	131529871	131529894	131529873	-	High_confidence	47	71	180	6.683762	4.346846	chr12	131529857	131530075	LTR|ERVL-MaLR|MLT1K	+	chr12	131524870	131530051	STRG.263889.4	-	131524870,131528590	131527486,131530051	0.900000
testis_male_adult_54_years	chr5	16441109	16441124	16441110	-	High_confidence	6	10	18	0.668376	3.969816	chr5	16440583	16441326	LTR|ERVL|HERV16-int	-	chr5	16373360	16441102	LOC101929505|NR_104625.1	-	16373360,16384133,16430390,16430785,16431047,16437373,16439252,16439885,16441087	16373836,16384344,16430604,16430978,16431112,16437915,16439475,16440081,16441102	0.666667
testis_male_adult_54_years	chr4	10988505	10988533	10988505	+	High_confidence	16	16	30	1.113960	4.237291	chr4	10988422	10988698	LTR|ERVL-MaLR|MLT1G	+	chr4	10988277	10988928	STRG.89121.1	+	10988277	10988928	0.833333
testis_male_adult_54_years	chr1	16437389	16437413	16437404	-	High_confidence	12	12	46	1.708073	5.159325	chr1	16437365	16437484	SINE|MIR|MIRc	+	chr1	16395680	16437393	SPATA21|ENST00000466212.5	-	16395680,16396557,16399343,16400481,16400719,16403726,16403967,16404966,16408497,16409117,16409600,16410777,16421910,16425523,16427863,16431242,16437127	16396312,16396746,16399521,16400635,16400892,16403844,16404039,16405104,16408705,16409203,16410043,16410915,16422194,16425731,16428015,16431422,16437393	0.630435
testis_male_adult_54_years	chr12	126737024	126737053	126737024	+	High_confidence	118	137	536	19.902758	7.623923	chr12	126736798	126737145	LTR|ERVL-MaLR|MLT1K	-	chr12	126737006	126745331	STRG.263169.1	+	126737006,126742739,126744769,126745005	126737156,126743480,126744919,126745331	0.744403
testis_male_adult_54_years	chr1	111788938	111788968	111788947	+	High_confidence	20	20	63	2.339317	5.286649	chr1	111788952	111789429	LINE|CR1|L3	+	chr1	111788955	111789814	STRG.14646.1	+	111788955	111789814	0.968254
testis_male_adult_54_years	chr16	2670012	2670033	2670012	-	RAMPAGE_only	15	15	37	1.373884	3.488542	chr16	2669524	2670537	LTR|ERVK|LTR13	-	chr16	2611391	2671405	STRG.301687.1	-	2611391,2616599,2618481,2618821,2622689,2633738,2634494,2638283,2638669,2642228,2650983,2660901,2669410	2615242,2616773,2618578,2618890,2622765,2633836,2634639,2638421,2638712,2642489,2660875,2663407,2671405	0.945946
testis_male_adult_54_years	chr10	110907711	110907752	110907711	-	RAMPAGE_only	3	3	12	0.445584	3.251629	chr10	110907540	110907748	DNA|hAT-Charlie|Charlie2a	-	chr10	110900233	110904945	BBIP1|ENST00000605265.1	-	110900233	110904945	0.750000
testis_male_adult_54_years	chr3	11094859	11094894	11094859	+	High_confidence	48	49	176	6.535234	4.769539	chr3	11093853	11095310	LTR|ERV1|LTR12C	+	chr3	11094877	11095353	STRG.62754.1	+	11094877	11095353	0.960227
testis_male_adult_54_years	chr8	114311398	114311415	114311398	+	High_confidence	4	4	14	0.519848	3.378783	chr8	114311169	114312595	LTR|ERV1|LTR12C	+	chr8	114312202	114312622	STRG.192549.1	+	114312202	114312622	0.571429
testis_male_adult_54_years	chr12	72255578	72255701	72255631	-	RAMPAGE_only	29	29	185	6.869422	6.395058	chr12	72255193	72255834	LTR|ERVL|MER70B	-	chr12	72253507	72258240	TRHDE-AS1|ENST00000549957.1	-	72253507	72258240	0.935135
testis_male_adult_54_years	chr4	187995770	187995804	187995787	+	High_confidence	3	3	19	0.705508	4.169925	chr4	187995806	187995869	DNA|hAT-Charlie|MER112	+	chr4	187995770	188005050	ZFP42|NM_174900.4	+	187995770,187999107,187999608,188002712	187995840,187999273,187999685,188005050	0.736842
testis_male_adult_54_years	chr14	51348521	51348522	51348521	-	RAMPAGE_only	12	12	12	0.445584	3.584963	chr14	51348481	51348547	SINE|Alu|AluJo	-	chr14	51344913	51385603	AL358332.1|ENST00000555649.1	-	51344913,51352581,51361686,51385560	51345075,51352722,51362153,51385603	0.833333
testis_male_adult_54_years	chr19	9376406	9376416	9376415	+	High_confidence	6	6	10	0.371320	3.121928	chr19	9376391	9377057	LINE|L1|L1M1	-	chr19	9376410	9382185	ZNF177|ENST00000589262.5	+	9376410,9378258,9378961,9379526,9380056,9380667	9376423,9378344,9379088,9379619,9380139,9382185	0.600000
testis_male_adult_54_years	chr9	94935015	94935042	94935015	-	High_confidence	5	6	24	0.891168	3.970176	chr9	94934915	94934987	LTR|ERVL|LTR16A2	-	chr9	94928550	94934946	AL353768.1|ENST00000439872.1	-	94928550,94934772	94928863,94934946	0.875000
testis_male_adult_54_years	chr12	56157286	56157354	56157286	+	High_confidence	5	5	46	1.708073	4.693479	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.804348
testis_male_adult_54_years	chr4	187201985	187202033	187202032	+	High_confidence	14	15	74	2.747769	5.836592	chr4	187201551	187202085	LTR|ERVL-MaLR|MLT1F2	-	chr4	187202032	187203614	LINC02374|ENST00000503637.1	+	187202032,187202981	187202142,187203614	0.527027
testis_male_adult_54_years	chr16	89541274	89541275	89541274	+	RAMPAGE_only	7	7	10	0.371320	2.725481	chr16	89541264	89541473	LINE|L1|L1MD2	+	chr16	89512978	89557685	SPG7|ENST00000646399.1	+	89512978,89524005,89526328,89529476,89530682,89531903,89532462,89540943,89541152,89544647,89546657,89548002,89550493,89552978,89553793,89554485,89556886,89557271	89513037,89524247,89526468,89529579,89530808,89532066,89532636,89541027,89542279,89544772,89546760,89548113,89550609,89553135,89553960,89554563,89557173,89557685	0.900000
testis_male_adult_54_years	chr8	57210716	57210880	57210879	+	RAMPAGE_only	40	48	545	20.236946	7.854480	chr8	57210497	57210965	LTR|ERV1|MER50	-	chr8	57193619	57220236	STRG.184749.4	+	57193619,57193884,57210733,57212877,57215108,57218269,57220110	57193689,57206354,57212583,57214932,57217976,57219623,57220236	0.996330
testis_male_adult_54_years	chr15	83208360	83208380	83208379	-	High_confidence	4	4	9	0.334188	3.169925	chr15	83208333	83208482	SINE|MIR|MIR3	+	chr15	83127752	83208018	HDGFL3|ENST00000299633.6	-	83127752,83151214,83157414,83157902,83163998,83207330	83139275,83151361,83157573,83158041,83164075,83208018	0.666667
testis_male_adult_54_years	chr2	227382036	227382044	227382036	-	High_confidence	18	18	30	1.113960	4.720050	chr2	227381959	227382168	LTR|ERVL-MaLR|MLT1O	+	chr2	227379225	227381995	TM4SF20|ENST00000449706.1	-	227379225,227381588	227379360,227381995	0.600000
testis_male_adult_54_years	chr4	158201593	158201610	158201593	+	High_confidence	112	116	306	11.362395	7.245025	chr4	158201406	158201936	LTR|ERVL-MaLR|MLT1F	+	chr4	158201603	158244328	STRG.106767.3	+	158201603,158203642,158211452,158212060,158212607,158215190,158217320,158219309,158232900,158235437,158237524,158240298,158241508,158244295	158201698,158203708,158211574,158212220,158212776,158215313,158217420,158219390,158232982,158235505,158237643,158240418,158241606,158244328	0.820261
testis_male_adult_54_years	chr14	90517208	90517209	90517208	-	High_confidence	77	82	95	3.527541	5.171691	chr14	90517128	90517301	DNA|hAT-Charlie|MER20	-	chr14	90515805	90517209	LOC105370619|NR_135274.1	-	90515805,90516984	90515887,90517209	0.768421
testis_male_adult_54_years	chr13	45376965	45377006	45376965	+	RAMPAGE_only	3	4	12	0.445584	3.251629	chr13	45376606	45377218	LTR|ERV1|HERVE-int	-	chr13	45378529	45390879	TPT1-AS1|ENST00000520585.5	+	45378529,45379194,45379898,45383090,45383759,45389734,45390757	45378671,45379335,45380001,45383235,45383838,45389820,45390879	0.750000
testis_male_adult_54_years	chr2	231961212	231961260	231961226	+	High_confidence	3	4	30	1.113960	3.964735	chr2	231961033	231961334	LINE|L2|L2c	+	chr2	231961244	232344350	DIS3L2|ENST00000273009.10	+	231961244,232014834,232015513,232024276,232029978,232087486,232130618,232136471,232163458,232210325,232238532,232249238,232263206,232343344	231961765,232014979,232015671,232024330,232030080,232087721,232130719,232136719,232163632,232210405,232238645,232249346,232263362,232344350	1.000000
testis_male_adult_54_years	chr4	6673446	6673447	6673446	+	High_confidence	113	113	115	4.270181	4.928378	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	0.982609
testis_male_adult_54_years	chr1	62207468	62207474	62207473	+	RAMPAGE_only	4	4	8	0.297056	2.807355	chr1	62207099	62207716	LINE|L1|L1MEd	+	chr1	62194830	62212328	L1TD1|ENST00000498273.1	+	62194830,62196434,62206518,62209782	62194921,62196528,62207636,62212328	0.875000
testis_male_adult_54_years	chr22	38312379	38312395	38312379	-	RAMPAGE_only	9	9	27	1.002564	4.403856	chr22	38312106	38312390	SINE|Alu|AluJb	-	chr22	38299955	38316973	CSNK1E|ENST00000430335.1	-	38299955,38300723,38302860,38303137,38314081,38316664	38300065,38300952,38303009,38303248,38314169,38316973	0.814815
testis_male_adult_54_years	chrX	88747225	88747247	88747234	+	High_confidence	11	13	38	1.411016	4.701746	chrX	88747038	88747505	LTR|ERV1?|LTR103_Mam	+	chrX	88747234	88754780	CPXCR1|ENST00000373111.5	+	88747234,88749317,88753406	88747331,88749423,88754780	0.894737
testis_male_adult_54_years	chr13	46466245	46466246	46466245	+	RAMPAGE_only	18	18	20	0.742640	3.826875	chr13	46466092	46466527	LTR|ERV1|HERVE-int	+	chr13	46465070	46467630	STRG.267619.1	+	46465070,46465929	46465364,46467630	0.850000
testis_male_adult_54_years	chr2	175257363	175257432	175257401	+	High_confidence	22	22	114	4.233049	5.906147	chr2	175256249	175257558	LTR|ERV1|LTR12C	-	chr2	175256914	175260583	STRG.51641.2	+	175256914,175260536	175260497,175260583	0.622807
testis_male_adult_54_years	chr2	17713553	17713557	17713553	-	RAMPAGE_only	5	6	11	0.408452	3.121928	chr2	17713456	17713607	LTR|ERVL?|LTR87	+	chr2	17703156	17753773	SMC6|ENST00000446852.5	-	17703156,17707218,17708638,17714860,17716085,17716740,17717087,17718076,17720939,17721141,17725256,17726388,17731077,17731740,17738220,17740744,17741611,17745826,17752977,17753625	17703292,17707379,17708753,17715065,17716264,17716905,17717176,17718223,17721038,17721261,17725358,17726469,17731139,17731877,17738326,17740822,17741729,17745951,17753064,17753773	0.545455
testis_male_adult_54_years	chr2	117664250	117664276	117664266	+	High_confidence	15	18	49	1.819469	5.199107	chr2	117664192	117664359	DNA|hAT-Charlie|MER5A	+	chr2	117664461	117666294	STRG.44805.1	+	117664461	117666294	1.000000
testis_male_adult_54_years	chr8	57218501	57218530	57218529	+	High_confidence	3	3	12	0.445584	2.913977	chr8	57218465	57218559	LTR|ERVL-MaLR|MLT1L	-	chr8	57218533	57220236	LINC01606|ENST00000521132.1	+	57218533,57219409,57220110	57218695,57219523,57220236	0.750000
testis_male_adult_54_years	chr14	33227604	33227645	33227638	-	High_confidence	87	88	242	8.985947	6.299220	chr14	33227412	33227768	LTR|ERVL-MaLR|MLT1A0	-	chr14	33221909	33227648	STRG.278977.3	-	33221909,33226828	33222279,33227648	0.975207
testis_male_adult_54_years	chr15	69462764	69462782	69462764	-	High_confidence	2	2	9	0.334188	2.750000	chr15	69462457	69462732	SINE|Alu|AluSp	-	chr15	69461590	69462886	STRG.296462.1	-	69461590,69462681	69462315,69462886	0.555556
testis_male_adult_54_years	chr3	37058793	37058907	37058886	-	RAMPAGE_only	28	29	108	4.010257	5.153483	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.990741
testis_male_adult_54_years	chr19	18559689	18559736	18559722	+	High_confidence	3	3	10	0.371320	3.321928	chr19	18559703	18559790	SINE|MIR|MIR	+	chr19	18559111	18569378	KXD1|ENST00000602094.5	+	18559111,18562035,18564868,18567131,18568401	18560550,18562157,18565021,18567178,18569378	1.000000
testis_male_adult_54_years	chr18	1407187	1407244	1407230	-	High_confidence	17	17	97	3.601805	6.057575	chr18	1407047	1407340	SINE|Alu|AluY	+	chr18	1265124	1407230	STRG.323383.1	-	1265124,1272441,1273360,1275965,1358725,1406986	1269852,1272511,1273533,1276077,1368597,1407230	0.969072
testis_male_adult_54_years	chr1	16018834	16018865	16018839	+	High_confidence	8	9	34	1.262488	4.663910	chr1	16018823	16019024	SINE|MIR|MIRb	-	chr1	16018804	16019919	STRG.2136.1	+	16018804	16019919	0.617647
testis_male_adult_54_years	chr10	101006498	101006623	101006498	+	RAMPAGE_only	15	20	83	3.081957	5.558480	chr10	101006484	101006542	LINE|CR1|L3	+	chr10	101002496	101007836	LZTS2|NM_001318101.1	+	101002496,101005457,101006484	101002946,101005715,101007836	1.000000
testis_male_adult_54_years	chr1	50413219	50413226	50413219	-	High_confidence	2	2	6	0.222792	2.584963	chr1	50412959	50413343	LTR|ERVL-MaLR|MLT1H1	+	chr1	50412612	50413002	STRG.6344.1	-	50412612	50413002	0.500000
testis_male_adult_54_years	chr14	103489400	103489439	103489409	+	High_confidence	5	7	19	0.705508	4.058814	chr14	103489306	103489540	LINE|L2|L2c	-	chr14	103489396	103503827	MARK3|ENST00000556463.5	+	103489396,103502881	103492034,103503827	0.947368
testis_male_adult_54_years	chr11	108786498	108786520	108786519	+	RAMPAGE_only	8	8	21	0.779772	4.037401	chr11	108785418	108787650	LINE|L1|L1PA16	-	chr11	108767313	108841476	DDX10|ENST00000534439.5	+	108767313,108767936,108838445,108841314	108767404,108768001,108838565,108841476	0.619048
testis_male_adult_54_years	chr21	37084038	37084089	37084054	+	High_confidence	3	3	19	0.705508	4.142664	chr21	37083879	37084118	DNA|hAT-Charlie|MER113B	+	chr21	37083625	37093402	TTC3|ENST00000484047.5	+	37083625,37087246,37087832,37088798,37090232,37091292,37093308	37084331,37087401,37088346,37088886,37090286,37091626,37093402	0.947368
testis_male_adult_54_years	chr22	39021125	39021156	39021146	+	High_confidence	16	16	85	3.156221	5.407526	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.988235
testis_male_adult_54_years	chr2	63801504	63801553	63801514	-	High_confidence	52	53	197	7.315006	5.823853	chr2	63801312	63801808	LTR|ERV1|LTR12F	-	chr2	63795526	63802323	STRG.39082.2	-	63795526	63802323	0.974619
testis_male_adult_54_years	chr6	3195772	3195779	3195772	-	High_confidence	8	9	18	0.668376	3.690117	chr6	3195583	3195991	LTR|ERVL-MaLR|MSTA	-	chr6	3182816	3195767	LOC100507194|NR_038295.1	-	3182816,3190826,3195665	3183726,3191257,3195767	0.722222
testis_male_adult_54_years	chr22	24011687	24011716	24011715	+	High_confidence	14	14	24	0.891168	4.349649	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24056304	STRG.354040.14	+	24011417,24035443,24036088,24038347,24041138,24049090,24050824,24054872,24056191	24011728,24035520,24036181,24038461,24043084,24049220,24050974,24055159,24056304	0.958333
testis_male_adult_54_years	chr1	90607373	90607374	90607373	-	High_confidence	52	54	71	2.636373	5.476868	chr1	90607206	90607558	LTR|ERVL-MaLR|THE1C	-	chr1	90606742	90607353	STRG.12274.7	-	90606742	90607353	0.577465
testis_male_adult_54_years	chr6	44955509	44955511	44955510	-	RAMPAGE_only	6	8	10	0.371320	3.169925	chr6	44955284	44955624	LINE|L1|L1PBa	+	chr6	44829766	45377933	STRG.141795.1	-	44829766,44932652,44950042,44953309,44954494,44961752,45003652,45014800,45020545,45105921,45321795,45322878,45365200,45377767	44829857,44932763,44950183,44953417,44954607,44961828,45003792,45014891,45020632,45106006,45321891,45322967,45365301,45377933	0.500000
testis_male_adult_54_years	chr20	62183654	62183673	62183654	+	High_confidence	5	5	12	0.445584	3.418296	chr20	62183560	62183716	DNA|hAT-Charlie|Charlie2b	-	chr20	62183050	62199130	MTG2|ENST00000448254.1	+	62183050,62188789,62193415,62195801,62197851,62198633,62199118	62183057,62188805,62193624,62195949,62197967,62198852,62199130	0.583333
testis_male_adult_54_years	chr5	176652459	176652480	176652459	+	RAMPAGE_only	3	3	8	0.297056	2.750000	chr5	176652030	176652581	LTR|ERVL-MaLR|MLT1K	-	chr5	176647619	176657056	TSPAN17|ENST00000507471.1	+	176647619,176652742,176654894,176656077,176656699,176656894	176647702,176652913,176655020,176656125,176656816,176657056	0.500000
testis_male_adult_54_years	chr3	126207245	126207272	126207254	+	High_confidence	5	6	23	0.854036	4.262692	chr3	126207150	126207656	LTR|ERVL-MaLR|MLT1G3	-	chr3	126207254	126210166	ALDH1L1-AS2|ENST00000500525.1	+	126207254,126208021,126208177,126208325	126207544,126208066,126208237,126210166	0.782609
testis_male_adult_54_years	chr7	64990020	64990050	64990020	-	RAMPAGE_only	2	3	14	0.519848	3.807355	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.857143
testis_male_adult_54_years	chr22	23621393	23621414	23621408	-	RAMPAGE_only	7	7	41	1.522412	4.782591	chr22	23621081	23621631	LTR|ERV1|LTR71B	+	chr22	23608451	23632321	DRICH1|ENST00000317749.9	-	23608451,23613288,23613638,23614134,23616852,23617574,23619363,23620593,23622090,23624882,23625980,23631815	23608768,23613330,23613660,23614214,23616874,23617657,23619393,23620615,23622176,23624904,23626048,23632321	0.634146
testis_male_adult_54_years	chr17	35936150	35936186	35936185	-	RAMPAGE_only	6	6	11	0.408452	2.646439	chr17	35936149	35936590	LTR|ERVL-MaLR|MLT1O	+	chr17	35934517	35943670	LYZL6|ENST00000618542.4	-	35934517,35936754,35937757,35939217,35943566	35934865,35936833,35937916,35939444,35943670	0.909091
testis_male_adult_54_years	chr19	9323727	9323749	9323748	+	High_confidence	4	4	10	0.371320	3.169925	chr19	9323408	9324010	LTR|ERV1|MER51A	+	chr19	9323771	9343845	ZNF559|NM_001202411.1	+	9323771,9324694,9333014,9338493,9339192,9341101,9341616	9324228,9324780,9333113,9338582,9339319,9341184,9343845	0.700000
testis_male_adult_54_years	chr17	58487164	58487181	58487164	-	RAMPAGE_only	2	2	8	0.297056	2.750000	chr17	58486895	58487205	SINE|Alu|AluSg	-	chr17	58420166	58488384	HSF5|ENST00000323777.7	-	58420166,58458767,58462781,58466884,58479892,58487724	58422430,58458945,58463303,58466979,58480267,58488384	1.000000
testis_male_adult_54_years	chrX	147264301	147264303	147264301	-	RAMPAGE_only	4	7	8	0.297056	2.750000	chrX	147264134	147264475	DNA|hAT-Charlie|MER1B	+	chrX	147259702	147334586	STRG.370678.1	-	147259702,147279686,147280976,147283674,147285083,147286373,147290100,147317831,147332093	147271800,147279731,147282429,147283780,147285128,147286479,147298355,147329084,147334586	1.000000
testis_male_adult_54_years	chr18	12150910	12150947	12150910	+	RAMPAGE_only	3	5	21	0.779772	4.201841	chr18	12148706	12152838	LINE|L1|L1PA14	+	chr18	12146535	12200089	STRG.324539.14	+	12146535,12148079,12190636,12197926,12198516	12147973,12190359,12191343,12198054,12200089	1.000000
testis_male_adult_54_years	chr1	236810300	236810312	236810311	+	RAMPAGE_only	6	7	11	0.408452	3.121928	chr1	236810180	236810411	DNA|TcMar-Tigger|MER46C	-	chr1	236795614	236853088	MTR|ENST00000463959.1	+	236795614,236803427,236806143,236810502,236812737,236815603,236816448,236824118,236825337,236826828,236829188,236831965,236835546,236838413,236850343,236852520,236852947	236795737,236803642,236806233,236810595,236812844,236815663,236816543,236824219,236825399,236826896,236829268,236832078,236835687,236838599,236850523,236852637,236853088	0.636364
testis_male_adult_54_years	chrX	31862899	31862920	31862911	-	RAMPAGE_only	9	9	35	1.299620	4.957854	chrX	31862739	31863061	LTR|ERV1|MER48	+	chrX	31119220	31875373	DMD|ENST00000358062.6	-	31119220,31134101,31146290,31147274,31169442,31172347,31173538,31178668,31180369,31182737,31203960,31206581,31209497,31223046,31260954,31323597,31348555,31444480,31478105,31478982,31496787,31507280,31627672,31657989,31679374,31729630,31773959,31819974,31836717,31875187	31121930,31134194,31146414,31147518,31169601,31172413,31173604,31178805,31180481,31182904,31204118,31206667,31209699,31223121,31261016,31323658,31348634,31444627,31478374,31479103,31496944,31507453,31627862,31658144,31679586,31729748,31774192,31820083,31836819,31875373	0.885714
testis_male_adult_54_years	chr16	60332680	60332681	60332680	+	High_confidence	6	6	8	0.297056	2.521641	chr16	60332328	60332876	LTR|ERV1|LTR12	+	chr16	60332701	60339349	STRG.307383.1	+	60332701,60339074	60332977,60339349	0.750000
testis_male_adult_54_years	chr7	84978814	84978816	84978814	+	RAMPAGE_only	9	14	21	0.779772	4.201841	chr7	84978326	84981881	LINE|L1|L1PBa1	-	chr7	84983555	84984506	HNRNPA1P8|ENST00000436090.1	+	84983555	84984506	0.904762
testis_male_adult_54_years	chr2	104581925	104581959	104581938	-	High_confidence	7	7	25	0.928300	4.323856	chr2	104581849	104582030	DNA|hAT-Charlie|MER5A	-	chr2	104580820	104581890	AC013402.2|ENST00000424257.1	-	104580820,104581821	104581188,104581890	0.640000
testis_male_adult_54_years	chr1	101639570	101639580	101639573	+	High_confidence	49	49	144	5.347010	6.391182	chr1	101639383	101639782	LTR|ERVL-MaLR|MLT1A1	+	chr1	101639585	101787572	LINC01709|ENST00000635702.1	+	101639585,101646253,101723741,101737223,101774100,101784923,101787110	101639703,101646352,101723875,101737357,101774249,101785031,101787572	0.729167
testis_male_adult_54_years	chr8	142729450	142729451	142729450	+	RAMPAGE_only	6	6	6	0.222792	2.584963	chr8	142729403	142730444	LTR|ERV1|HERVIP10B3-int	-	chr8	142727722	142736927	THEM6|ENST00000520217.1	+	142727722,142735325,142736856	142727859,142735668,142736927	0.833333
testis_male_adult_54_years	chr1	32995406	32995407	32995406	-	High_confidence	6	6	9	0.334188	3.000000	chr1	32995301	32995587	LINE|L2|L2c	+	chr1	32992681	32994648	STRG.4089.2	-	32992681	32994648	0.777778
testis_male_adult_54_years	chr1	209889312	209889339	209889312	+	RAMPAGE_only	3	3	10	0.371320	3.121928	chr1	209888247	209889504	LTR|ERV1|LTR12C	-	chr1	209952723	210101229	STRG.24002.4	+	209952723,210013632,210015180,210021038,210094321,210100011	209953259,210013797,210017099,210021254,210094593,210101229	0.600000
testis_male_adult_54_years	chr13	106562008	106562034	106562008	-	High_confidence	2	2	9	0.334188	3.000000	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.666667
testis_male_adult_54_years	chr11	123469163	123469213	123469212	+	High_confidence	5	5	20	0.742640	3.546439	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123469255	123600547	STRG.244082.6	+	123469255,123480815,123577366,123584311,123594081,123594734,123595941,123600467	123469478,123480893,123577577,123584332,123594166,123594838,123596037,123600547	1.000000
testis_male_adult_54_years	chr2	130672061	130672109	130672061	+	RAMPAGE_only	2	2	13	0.482716	3.584963	chr2	130672047	130672184	LTR|ERVL-MaLR|THE1D-int	-	chr2	130611480	130691691	STRG.46606.1	+	130611480,130616789,130617064,130621465,130624063,130631408,130632489,130638618,130643982,130645736,130646128,130654920,130656548,130666961,130683330,130685133,130690152,130691534	130611942,130616904,130620151,130621603,130624134,130631453,130632656,130638689,130644053,130645781,130646310,130655041,130666724,130682240,130683528,130685356,130690323,130691691	0.923077
testis_male_adult_54_years	chr17	59892716	59892746	59892716	-	High_confidence	9	9	46	1.708073	4.897300	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.913043
testis_male_adult_54_years	chr2	24403729	24403730	24403729	+	High_confidence	57	57	66	2.450713	5.326259	chr2	24402686	24404046	LTR|ERV1|LTR12E	+	chr2	24403714	24410804	STRG.32444.1	+	24403714,24410392	24404876,24410804	0.969697
testis_male_adult_54_years	chr1	183443163	183443206	183443195	-	High_confidence	6	6	19	0.705508	3.794653	chr1	183443165	183443315	DNA|DNA|UCON78	-	chr1	183439691	183443265	STRG.20771.1	-	183439691,183443161	183440206,183443265	0.631579
testis_male_adult_54_years	chr18	55635925	55635962	55635953	-	High_confidence	7	7	37	1.373884	4.493133	chr18	55635901	55635958	DNA|hAT-Ac|OldhAT1	+	chr18	55222330	55635993	TCF4|NM_001243226.2	-	55222330,55228220,55228846,55232508,55234547,55254496,55257314,55259948,55261465,55269830,55275618,55279550,55350358,55350873,55403453,55461018,55464075,55585279,55587044,55631297,55635702	55228030,55228361,55229076,55232671,55234683,55254700,55257391,55260027,55261533,55269963,55275752,55279656,55350408,55351003,55403518,55461115,55464137,55585352,55587136,55631388,55635993	0.702703
testis_male_adult_54_years	chr5	29395973	29396010	29395988	-	High_confidence	40	57	241	8.948815	6.944850	chr5	29394634	29396044	LTR|ERV1|HERVFH21-int	+	chr5	29380069	29395976	LOC101929681|NR_104628.1	-	29380069,29381852,29384319,29389810,29395853	29380325,29381962,29384392,29389939,29395976	0.593361
testis_male_adult_54_years	chr8	49512221	49512266	49512221	-	High_confidence	7	7	25	0.928300	4.220176	chr8	49511392	49512268	LINE|L1|L1M4	-	chr8	49496762	49512180	AC090155.2|ENST00000518854.1	-	49496762,49512126	49496975,49512180	0.880000
testis_male_adult_54_years	chr17	76256920	76256921	76256920	-	High_confidence	35	35	35	1.299620	4.378864	chr17	76256640	76258213	LTR|ERV1|LTR12C	-	chr17	76254946	76256916	STRG.322030.1	-	76254946	76256916	1.000000
testis_male_adult_54_years	chr1	174925302	174925311	174925302	+	RAMPAGE_only	16	16	49	1.819469	5.053509	chr1	174925083	174925379	SINE|Alu|AluY	+	chr1	174700730	174990341	RABGAP1L|ENST00000469553.6	+	174700730,174702112,174752312,174811831,174877391,174957456,174957890,174969276,174976077,174978806,174982833,174988640,174989848	174700865,174702256,174752354,174811960,174877605,174957549,174958173,174969387,174976182,174978890,174982905,174988838,174990341	0.530612
testis_male_adult_54_years	chr12	5244169	5244201	5244169	-	RAMPAGE_only	20	20	86	3.193353	5.024618	chr12	5243975	5244424	LINE|L2|L2c	+	chr12	5233995	5243151	LOC101929584|NR_120476.2	-	5233995,5237003,5238206,5239887,5243067	5234336,5237084,5238323,5240112,5243151	0.918605
testis_male_adult_54_years	chr2	174570645	174570646	174570645	-	High_confidence	7	7	9	0.334188	3.000000	chr2	174570549	174570714	DNA|hAT-Charlie|MER5B	+	chr2	174567076	174570646	WIPF1|ENST00000467149.1	-	174567076,174567860,174568606,174570438	174567183,174568073,174568823,174570646	0.666667
testis_male_adult_54_years	chr7	84150603	84150645	84150603	-	High_confidence	2	2	9	0.334188	2.947703	chr7	84150229	84151670	LINE|L1|L1PA3	+	chr7	84150199	84150756	STRG.166567.1	-	84150199	84150756	0.666667
testis_male_adult_54_years	chr2	65456334	65456372	65456359	-	High_confidence	5	5	18	0.668376	4.058814	chr2	65455887	65456430	LINE|L2|L2	+	chr2	65442054	65456328	AC012370.2|ENST00000600508.5	-	65442054,65450232,65455659,65456304	65442501,65450759,65455760,65456328	0.888889
testis_male_adult_54_years	chr14	51990674	51990698	51990674	+	RAMPAGE_only	2	2	9	0.334188	2.725481	chr14	51990653	51990774	SINE|MIR|MIRb	+	chr14	51989614	52004653	RTRAF|ENST00000556760.5	+	51989614,51991316,51993722,51998493,51999707,52001797,52004239,52004361	51989700,51991441,51993822,51998580,51999796,52001866,52004242,52004653	0.555556
testis_male_adult_54_years	chr16	19607765	19607804	19607775	+	High_confidence	41	67	286	10.619755	5.312785	chr16	19607781	19608002	SINE|MIR|MIR	+	chr16	19607775	19626202	VPS35L|ENST00000538552.5	+	19607775,19608177,19608973,19610321,19616113,19616685,19626176	19607861,19608274,19609021,19610415,19616191,19616808,19626202	0.919580
testis_male_adult_54_years	chr20	62043129	62043161	62043129	-	RAMPAGE_only	24	24	54	2.005129	4.336367	chr20	62043040	62043305	SINE|Alu|AluJb	+	chr20	62000567	62048835	STRG.347486.5	-	62000567,62003730,62006081,62006509,62007546,62009051,62010045,62012814,62014546,62029780	62003274,62003878,62006178,62006758,62007636,62009174,62010165,62012934,62014707,62048835	0.944444
testis_male_adult_54_years	chr12	119504157	119504168	119504167	+	RAMPAGE_only	8	8	26	0.965432	4.303509	chr12	119504158	119504255	SINE|MIR|MIRb	+	chr12	119513606	119541040	STRG.262275.2	+	119513606,119516622,119520120,119522938,119523692,119528614,119530873,119540613	119513765,119516707,119520192,119523001,119523818,119528746,119531063,119541040	0.576923
testis_male_adult_54_years	chr14	89957989	89958021	89958020	+	High_confidence	4	4	12	0.445584	3.584963	chr14	89957831	89958835	LTR|ERV1|LTR28C	-	chr14	89958292	89963599	TDP1|ENST00000556498.1	+	89958292,89963107	89958397,89963599	0.750000
testis_male_adult_54_years	chr11	131984621	131984645	131984621	-	High_confidence	10	13	25	0.928300	4.349649	chr11	131984108	131985395	LTR|ERVL-MaLR|MLT1J1-int	-	chr11	131981095	131984661	AP000844.1|ENST00000446631.2	-	131981095,131984482	131981493,131984661	0.560000
testis_male_adult_54_years	chr2	135605926	135605936	135605935	+	RAMPAGE_only	6	6	19	0.705508	3.572431	chr2	135605676	135605983	SINE|Alu|AluSx	-	chr2	135604855	135636183	R3HDM1|ENST00000456040.1	+	135604855,135616667,135621493,135622653,135631717,135631860,135635889,135636087	135605016,135616757,135621608,135622732,135631777,135632001,135635998,135636183	0.631579
testis_male_adult_54_years	chr5	151436931	151436945	151436944	-	High_confidence	20	21	60	2.227921	4.973296	chr5	151436791	151436932	SINE|MIR|MIR3	-	chr5	151366298	151436953	AC034205.2|ENST00000647906.1	-	151366298,151412531,151425307,151436205	151366658,151412749,151425397,151436953	0.916667
testis_male_adult_54_years	chr2	241387308	241387309	241387308	+	RAMPAGE_only	6	6	6	0.222792	2.584963	chr2	241387219	241387511	LINE|L1|L1M4	+	chr2	241410940	241432241	FARP2|ENST00000471447.5	+	241410940,241413306,241417961,241431678,241432210	241411130,241413421,241418109,241431774,241432241	1.000000
testis_male_adult_54_years	chr6	115928436	115928437	115928436	+	High_confidence	4	5	7	0.259924	2.807355	chr6	115927013	115928602	LTR|ERV1|LTR12C	-	chr6	115928293	116037998	STRG.150123.1	+	115928293,115954350,115975813,116037928	115928717,115954463,115975889,116037998	0.857143
testis_male_adult_54_years	chr9	68634941	68634980	68634941	-	High_confidence	4	4	18	0.668376	3.683542	chr9	68634706	68635090	LTR|ERVL-MaLR|MLT1J2	-	chr9	68626358	68634792	STRG.203016.1	-	68626358,68634460,68634768	68627032,68634682,68634792	0.944444
testis_male_adult_54_years	chr8	102261204	102261220	102261204	-	High_confidence	1	1	7	0.259924	2.584963	chr8	102261109	102261291	DNA|hAT-Ac|OldhAT1	+	chr8	102253945	102261986	UBR5|ENST00000517465.1	-	102253945,102257631,102258315,102258984,102261145,102261914	102254514,102257717,102258424,102259129,102261259,102261986	0.857143
testis_male_adult_54_years	chr11	63616256	63616264	63616256	-	RAMPAGE_only	6	7	14	0.519848	3.546594	chr11	63615968	63616395	LINE|L1|L1MA8	-	chr11	63574461	63614469	PLA2G16|NM_001128203.1	-	63574461,63590099,63598060,63613999,63614384	63575046,63590368,63598163,63614068,63614469	0.714286
testis_male_adult_54_years	chr1	119182244	119182250	119182244	+	RAMPAGE_only	2	2	7	0.259924	2.807355	chr1	119181236	119182807	LTR|ERV1|HERV17-int	-	chr1	119140424	119183823	AL359915.2|ENST00000440150.5	+	119140424,119150564,119181389,119181977	119140793,119150746,119181461,119183823	1.000000
testis_male_adult_54_years	chr15	27161253	27161279	27161259	-	High_confidence	719	721	1493	55.438093	7.643701	chr15	27161191	27161472	LTR|ERVL|LTR40a	-	chr15	27157614	27161314	STRG.290440.1	-	27157614,27158265,27158947,27159808,27161021	27158155,27158396,27159047,27159861,27161314	0.898192
testis_male_adult_54_years	chr1	26284538	26284551	26284550	-	RAMPAGE_only	5	5	10	0.371320	2.947703	chr1	26284514	26284630	SINE|MIR|MIR3	-	chr1	26282304	26298026	UBXN11|ENST00000496466.1	-	26282304,26282648,26282863,26284141,26284361,26285822,26294204,26296918,26297426,26297961	26282569,26282789,26282937,26284281,26285541,26286037,26294331,26296995,26297481,26298026	0.900000
testis_male_adult_54_years	chrY	20468190	20468214	20468213	-	RAMPAGE_only	3	3	6	0.222792	2.584963	chrY	20467574	20468257	LTR|ERV1|LTR12_	+	chrY	20465667	20519228	TTTY10|ENST00000455084.1	-	20465667,20466427,20468188,20469871,20507351,20518270	20465822,20466667,20468248,20469981,20507456,20519228	0.833333
testis_male_adult_54_years	chr6	24796674	24796705	24796695	+	High_confidence	4	4	16	0.594112	3.702820	chr6	24796410	24797141	LTR|ERV1|LTR8	-	chr6	24796697	24797086	STRG.138453.1	+	24796697	24797086	0.500000
testis_male_adult_54_years	chr10	119693472	119693482	119693476	-	High_confidence	67	75	119	4.418709	5.261394	chr10	119693455	119694108	LINE|L2|L2c	+	chr10	119681517	119693414	STRG.226944.1	-	119681517,119693198	119681738,119693414	0.630252
testis_male_adult_54_years	chr4	175933494	175933498	175933494	-	RAMPAGE_only	2	3	7	0.259924	2.584963	chr4	175933119	175933572	LINE|L1|L1ME2	+	chr4	175673679	175907168	GPM6A|ENST00000513365.1	-	175673679,175701574,175812190,175906652,175907042	175673836,175701767,175812249,175906851,175907168	0.571429
testis_male_adult_54_years	chr2	54485795	54485815	54485795	+	RAMPAGE_only	4	4	8	0.297056	2.807355	chr2	54485157	54486746	Retroposon|SVA|SVA_D	+	chr2	54457260	54629204	SPTBN1|ENST00000389980.7	+	54457260,54526371,54599091,54612160,54616206,54617607,54618077,54621399,54622299,54623478,54624803,54625931,54628096,54628932	54457307,54526566,54599243,54612334,54616298,54617688,54618193,54621512,54622487,54623596,54624962,54626234,54628250,54629204	0.750000
testis_male_adult_54_years	chr4	87018417	87018420	87018419	+	RAMPAGE_only	24	32	37	1.373884	4.764858	chr4	87018232	87018434	LINE|L2|L2c	-	chr4	87007395	87135701	AFF1|ENST00000544085.5	+	87007395,87046165,87046694,87084119,87089983,87091792,87094914,87105627,87105807,87108158,87114366,87125036,87126098,87126235,87126270,87127025,87127642,87131082,87131792,87132270,87134470,87135579,87135600	87007424,87046286,87047594,87084164,87090070,87091829,87094969,87105682,87105845,87108315,87115299,87125143,87126234,87126268,87126336,87127117,87127703,87131219,87131864,87132408,87134694,87135599,87135701	0.783784
testis_male_adult_54_years	chr13	45379985	45379990	45379985	+	High_confidence	5	5	9	0.334188	2.947703	chr13	45379416	45380004	LTR|ERV1|HERVE-int	-	chr13	45379283	45391157	TPT1-AS1|ENST00000519454.5	+	45379283,45379925,45383090,45383759,45389734,45390757,45391031	45379335,45380001,45383235,45383838,45389820,45390902,45391157	0.777778
testis_male_adult_54_years	chr14	89956749	89956753	89956749	+	High_confidence	4	4	8	0.297056	2.750000	chr14	89956615	89956909	SINE|Alu|AluSx1	+	chr14	89956571	90043315	TDP1|ENST00000555178.5	+	89956571,89963107,89966146,89967366,89971174,89980539,89984515,89985131,89988904,89989716,89991916,89993375,90019315,90033105,90043069	89956800,89963673,89966190,89967422,89971271,89980632,89984683,89985210,89989090,89989765,89991983,89993483,90019418,90033214,90043315	0.750000
testis_male_adult_54_years	chr6	110200675	110200707	110200703	+	RAMPAGE_only	10	11	33	1.225356	4.718488	chr6	110200686	110200864	SINE|MIR|MIRc	+	chr6	110180420	110232220	CDC40|NM_015891.2	+	110180420,110193181,110201557,110207505,110209083,110210706,110212132,110213085,110215285,110217701,110219363,110219735,110226166,110228831,110229953	110180633,110193268,110201687,110207589,110209223,110210803,110212272,110213160,110215331,110217803,110219479,110219869,110226243,110228976,110232220	1.000000
testis_male_adult_54_years	chr7	127113022	127113023	127113022	-	High_confidence	10	10	11	0.408452	3.321928	chr7	127112887	127113379	LINE|RTE-X|L4_C_Mam	+	chr7	126533050	127112320	GRM8|ENST00000480995.5	-	126533050,126609493,126701756,126769864,126902541,126903971,126904547,127105295,127106495,127112168	126533778,126609498,126701827,126770065,126902679,126904126,126904683,127105370,127106712,127112320	0.818182
testis_male_adult_54_years	chr13	20225721	20225722	20225721	-	High_confidence	8	8	12	0.445584	3.251629	chr13	20225617	20225751	LINE|CR1|L3	+	chr13	20222057	20225683	GJB6|ENST00000636852.1	-	20222057,20225281	20223495,20225683	0.833333
testis_male_adult_54_years	chr7	145360736	145360746	145360745	+	High_confidence	6	6	13	0.482716	3.251629	chr7	145359544	145361198	LTR|ERV1|LTR12C	-	chr7	145360715	145361546	STRG.176284.1	+	145360715	145361546	0.615385
testis_male_adult_54_years	chr1	224011651	224011694	224011651	+	RAMPAGE_only	6	6	17	0.631244	3.734522	chr1	224011567	224011683	LTR|ERV1|MER67C	-	chr1	223992763	224015255	STRG.25762.3	+	223992763,224003519,224009319,224011869	224002622,224003654,224011839,224015255	0.823529
testis_male_adult_54_years	chr1	217736634	217736659	217736658	+	RAMPAGE_only	19	22	67	2.487845	4.816825	chr1	217736522	217736699	LINE|L2|L2a	-	chr1	217737843	217801768	SPATA17|ENST00000492747.2	+	217737843,217739472,217741974,217774333,217782173,217801717	217737967,217739589,217742098,217774537,217782322,217801768	0.940299
testis_male_adult_54_years	chr1	243814670	243814731	243814730	-	RAMPAGE_only	5	5	16	0.594112	3.589898	chr1	243814710	243814819	LTR|ERVL-MaLR|MLT1F	-	chr1	243664771	243832118	STRG.28363.8	-	243664771,243683196,243695590,243734957,243788701	243664883,243683310,243695716,243741807,243832118	0.812500
testis_male_adult_54_years	chr22	23633875	23633879	23633875	-	RAMPAGE_only	7	7	13	0.482716	3.584963	chr22	23633724	23633892	SINE|MIR|MIR	-	chr22	23608451	23632321	DRICH1|ENST00000317749.9	-	23608451,23613288,23613638,23614134,23616852,23617574,23619363,23620593,23622090,23624882,23625980,23631815	23608768,23613330,23613660,23614214,23616874,23617657,23619393,23620615,23622176,23624904,23626048,23632321	0.846154
testis_male_adult_54_years	chr7	103274241	103274324	103274279	-	RAMPAGE_only	6	7	32	1.188224	4.361792	chr7	103274079	103275487	LTR|ERV1|LTR12C	-	chr7	103175132	103280219	DPY19L2P2|ENST00000439473.5	-	103175132,103184001,103185437,103195439,103197186,103198594,103210266,103212160,103214000,103216462,103225104,103233799,103234648,103237755,103238802,103240561,103242988,103254781,103257603,103271731,103274069,103277613,103279832	103175411,103184127,103185537,103195614,103197306,103198619,103210313,103212232,103214102,103216543,103225164,103233886,103234726,103237855,103238871,103240653,103243046,103254875,103257724,103271869,103275627,103277638,103280219	0.843750
testis_male_adult_54_years	chr2	150628878	150628914	150628893	+	High_confidence	67	68	184	6.832290	6.693843	chr2	150628643	150628961	DNA|hAT-Tip100|MER45C	-	chr2	150628896	150634969	LOC101929282|NR_110245.1	+	150628896,150632307,150634635	150629121,150632396,150634969	0.750000
testis_male_adult_54_years	chr8	83693541	83693560	83693559	-	High_confidence	2	2	8	0.297056	2.807355	chr8	83693224	83694519	LTR|ERV1|LTR12C	-	chr8	83693112	83693495	STRG.188097.3	-	83693112	83693495	0.500000
testis_male_adult_54_years	chr3	127526832	127526909	127526872	-	RAMPAGE_only	13	13	77	2.859165	5.841398	chr3	127526392	127526877	LINE|L2|L2a	-	chr3	127491517	127530775	STRG.77021.9	-	127491517,127499684,127522194	127498159,127500609,127530775	0.610390
testis_male_adult_54_years	chr5	64788984	64789009	64789008	+	RAMPAGE_only	4	4	13	0.482716	3.418296	chr5	64789056	64789153	LINE|L2|L2b	+	chr5	64800244	64804907	CWC27|ENST00000506168.1	+	64800244,64801301,64804228	64800327,64801332,64804907	0.538462
testis_male_adult_54_years	chr9	108885871	108885872	108885871	-	RAMPAGE_only	8	8	8	0.297056	2.500000	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108867516	108893083	ELP1|ENST00000495759.5	-	108867516,108874894,108875632,108877994,108878622,108879445,108880051,108881704,108882124,108889331,108891202,108892985	108869182,108874970,108875735,108878149,108878750,108879557,108880165,108881765,108882187,108889393,108891404,108893083	0.625000
testis_male_adult_54_years	chr2	3389883	3389911	3389893	+	High_confidence	4	5	14	0.519848	3.392747	chr2	3389174	3390211	LTR|ERV1|LTR28C	-	chr2	3389693	3460303	TRAPPC12|ENST00000441983.5	+	3389693,3401776,3421880,3424524,3443778,3457620,3460262	3389779,3401893,3421994,3424663,3443891,3457693,3460303	0.571429
testis_male_adult_54_years	chr11	16815566	16815603	16815602	-	High_confidence	2	2	8	0.297056	3.000000	chr11	16815525	16815815	SINE|Alu|AluSz6	-	chr11	16787689	16816264	PLEKHA7|ENST00000636113.1	-	16787689,16789774,16790797,16791010,16794487,16794909,16800973,16801667,16802971,16803226,16807143,16813112,16816177	16789296,16789878,16790915,16791202,16794714,16795018,16801075,16801817,16803052,16803295,16807224,16813166,16816264	0.875000
testis_male_adult_54_years	chr7	25126968	25126969	25126968	-	RAMPAGE_only	7	7	7	0.259924	2.807355	chr7	25126475	25129721	LINE|L1|L1M1	-	chr7	25123443	25157725	STRG.160434.5	-	25123443,25123950,25125199,25142240,25142639,25151595,25155010	25123849,25124127,25125977,25142332,25142814,25151684,25157725	0.714286
testis_male_adult_54_years	chr12	31184948	31184968	31184948	-	RAMPAGE_only	3	3	18	0.668376	3.969816	chr12	31184785	31185081	SINE|Alu|AluSq	+	chr12	31112235	31201235	AC024940.1|ENST00000641844.2	-	31112235,31112980,31114395,31114836,31116356,31117040,31124330,31125370,31126346,31127650,31129718,31130507,31131350,31132244,31133116,31133878,31135579,31135953,31136620,31138116,31139072,31144904,31145409,31146361,31147894,31148814,31149314,31150172,31154332,31157985,31158885,31170407,31171435,31172322,31172815,31173513,31177658,31178802,31183213,31185585,31188568,31194011,31194776,31195520,31200422,31201051	31112288,31113083,31114464,31114927,31116469,31117197,31124370,31125582,31126512,31127725,31129875,31130589,31131524,31132328,31133168,31133997,31135709,31136182,31136713,31138265,31139243,31145054,31145555,31146416,31148122,31148973,31149424,31150293,31154450,31158070,31159054,31170504,31171606,31172472,31172960,31173574,31177889,31178961,31183323,31185700,31188686,31194096,31194945,31195541,31200579,31201235	0.666667
testis_male_adult_54_years	chr18	36805376	36805404	36805376	-	RAMPAGE_only	3	3	12	0.445584	3.188722	chr18	36805277	36805349	LINE|L2|L2b	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.916667
testis_male_adult_54_years	chr1	29166821	29166840	29166839	-	RAMPAGE_only	4	5	10	0.371320	2.947703	chr1	29166709	29166813	SINE|MIR|MIRc	-	chr1	29159383	29181882	STRG.3660.4	-	29159383,29160374,29165889,29168502	29159486,29160517,29166912,29181882	0.500000
testis_male_adult_54_years	chr19	15608040	15608041	15608040	-	High_confidence	215	215	229	8.503231	5.035228	chr19	15607625	15609207	LTR|ERV1|LTR12C	-	chr19	15605053	15608034	STRG.333203.1	-	15605053	15608034	0.956332
testis_male_adult_54_years	chr5	149959518	149959532	149959518	-	RAMPAGE_only	2	2	8	0.297056	2.807355	chr5	149959357	149959553	SINE|MIR|MIRc	-	chr5	149857955	149944793	PDE6A|ENST00000255266.9	-	149857955,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647,149907311,149914942,149921634,149931027,149933929,149934565,149944199	149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149903695,149907378,149915007,149921709,149931168,149934019,149934718,149944793	0.875000
testis_male_adult_54_years	chr1	241134935	241134960	241134935	+	High_confidence	5	5	18	0.668376	4.058814	chr1	241134778	241135144	LTR|ERV1|MER48	+	chr1	241135164	241136123	STRG.28004.1	+	241135164	241136123	0.500000
testis_male_adult_54_years	chr13	51080845	51080846	51080845	-	RAMPAGE_only	12	12	13	0.482716	3.418296	chr13	51078923	51080846	LINE|L1|L1PA6	-	chr13	50994510	51066157	GUCY1B2|NR_003923.2	-	50994510,51004252,51006699,51006989,51010072,51016180,51016915,51020397,51024099,51025333,51026701,51028207,51029593,51034002,51048219,51062820,51065950	50994811,51004576,51006909,51007141,51010227,51016327,51017064,51020718,51024316,51025437,51026813,51028404,51029693,51034159,51048314,51062894,51066157	0.538462
testis_male_adult_54_years	chr1	51846740	51846741	51846740	-	RAMPAGE_only	145	147	176	6.535234	6.243027	chr1	51846449	51847931	LTR|ERV1|LTR12C	-	chr1	51789211	51840454	NRDC|ENST00000485608.5	-	51789211,51789567,51790532,51790899,51791577,51792045,51792376,51794471,51794822,51798248,51800555,51803813,51805509,51806793,51809314,51810280,51811993,51814034,51814550,51814692,51816311,51818065,51819799,51821497,51823663,51825286,51827795,51834016,51836130,51836368,51840225	51789433,51789657,51790649,51790990,51791661,51792098,51792424,51794610,51794854,51798411,51800683,51803964,51805561,51806913,51809401,51810404,51812098,51814089,51814609,51814813,51816389,51818135,51819873,51821555,51823786,51825382,51827869,51834170,51836212,51836438,51840454	0.755682
testis_male_adult_54_years	chr20	12202629	12202652	12202651	-	High_confidence	40	40	137	5.087086	5.444240	chr20	12202604	12202909	LTR|ERVL|LTR16A1	+	chr20	12201676	12202655	STRG.341900.1	-	12201676	12202655	0.788321
testis_male_adult_54_years	chr15	42327960	42327985	42327984	+	RAMPAGE_only	2	2	7	0.259924	2.584963	chr15	42327949	42328188	SINE|MIR|MIRb	-	chr15	42326300	42352078	STRG.293227.13	+	42326300,42327362,42327847,42329305,42330575,42338388,42339668,42340689,42343077,42345757,42348102,42349382,42351328,42352029	42326424,42327442,42328119,42329449,42330672,42338490,42339912,42340754,42343154,42345832,42348216,42349495,42351432,42352078	0.571429
testis_male_adult_54_years	chr17	64920815	64920816	64920815	+	RAMPAGE_only	4	4	7	0.259924	2.807355	chr17	64920770	64921042	LTR|ERVL|MER21B	-	chr17	64918993	64930805	STRG.320355.3	+	64918993,64927635,64930717	64926622,64930350,64930805	1.000000
testis_male_adult_54_years	chr16	20680842	20680845	20680844	-	RAMPAGE_only	4	7	9	0.334188	3.169925	chr16	20678043	20681722	LTR|ERV1|HERV15-int	+	chr16	20623485	20676293	STRG.304993.3	-	20623485,20624095,20625422,20627188,20636738,20637370,20640460,20661793,20669826,20671530,20676124	20623572,20624215,20625522,20627316,20636840,20637451,20640584,20661873,20669986,20671671,20676293	0.777778
testis_male_adult_54_years	chr11	72111434	72111497	72111496	-	High_confidence	5	7	27	1.002564	4.546594	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72108817	72111497	ANAPC15|ENST00000538117.5	-	72108817,72109228,72110087,72110543,72111156,72111411	72108875,72109341,72110225,72110603,72111281,72111497	0.740741
testis_male_adult_54_years	chr18	79167744	79167751	79167744	+	RAMPAGE_only	9	9	17	0.631244	3.750000	chr18	79166708	79168032	LTR|ERV1|MER52A	-	chr18	79113309	79364284	ATP9B|ENST00000490210.6	+	79113309,79126266,79143801,79154503,79173701,79176812,79193182,79206936,79213961,79253380,79277053,79303603,79306985,79329140,79330011,79336627,79337278,79342267,79344264,79345427,79345774,79347769,79348131,79359353	79113354,79126375,79143860,79154555,79173733,79176907,79193263,79207012,79214038,79253541,79277196,79303716,79307234,79329302,79330104,79336711,79337449,79342366,79344354,79345572,79345839,79347925,79348196,79364284	0.882353
testis_male_adult_54_years	chr8	31177184	31177198	31177184	-	High_confidence	20	20	70	2.599241	5.764858	chr8	31176942	31177294	LTR|ERV1|MER51A	+	chr8	31171122	31177167	AC009563.1|ENST00000523365.1	-	31171122,31171525,31176691,31177094	31171318,31171584,31177006,31177167	0.657143
testis_male_adult_54_years	chr8	10051991	10051992	10051991	-	RAMPAGE_only	39	39	44	1.633808	5.259991	chr8	10050730	10052092	LTR|ERVL-MaLR|MLT1J-int	+	chr8	10050484	10054254	AC034111.1|ENST00000562143.1	-	10050484	10054254	0.545455
testis_male_adult_54_years	chr8	33608548	33608554	33608548	-	High_confidence	10	10	16	0.594112	3.906891	chr8	33608223	33608635	LINE|L1|HAL1	-	chr8	33604875	33608541	STRG.182618.1	-	33604875,33608520	33605251,33608541	0.750000
testis_male_adult_54_years	chr3	111677494	111677502	111677501	+	RAMPAGE_only	4	4	8	0.297056	2.807355	chr3	111677482	111677708	SINE|MIR|MIRb	-	chr3	111674921	111846266	PLCXD2|ENST00000477665.1	+	111674921,111707925,111713886,111732618,111845820	111675408,111708386,111714128,111732703,111846266	0.625000
testis_male_adult_54_years	chr9	15460188	15460193	15460192	+	RAMPAGE_only	6	6	14	0.519848	3.664498	chr9	15460106	15460234	LINE|L1|L1M5	-	chr9	15422868	15462460	SNAPC3|ENST00000490969.5	+	15422868,15423908,15433551,15444601,15447094,15451319,15453040,15457959,15459718,15461630	15423193,15423986,15433636,15444706,15447244,15451402,15453205,15458067,15460313,15462460	0.714286
testis_male_adult_54_years	chr2	209611304	209611334	209611333	+	High_confidence	3	4	9	0.334188	3.169925	chr2	209611230	209611346	DNA|hAT-Charlie|MER5A	+	chr2	209611338	209710161	STRG.56822.6	+	209611338,209625052,209653141,209678571,209680749,209700276,209704449,209705579,209709913	209611365,209625129,209653432,209678685,209680827,209700338,209704620,209705727,209710161	0.888889
testis_male_adult_54_years	chr3	52749712	52749713	52749712	-	RAMPAGE_only	4	4	7	0.259924	2.584963	chr3	52749551	52749857	SINE|Alu|AluSz	+	chr3	52743227	52746114	NEK4|ENST00000493199.1	-	52743227,52744238,52746060	52743461,52744305,52746114	0.714286
testis_male_adult_54_years	chr5	859054	859078	859074	+	High_confidence	7	7	32	1.188224	4.696132	chr5	859111	859556	LTR|ERV1|LTR71B	+	chr5	858604	861067	STRG.111269.1	+	858604	861067	0.937500
testis_male_adult_54_years	chr10	69538554	69538578	69538559	-	High_confidence	94	95	267	9.914247	5.372744	chr10	69538427	69538641	SINE|MIR|MIR	+	chr10	69536404	69539132	STRG.220919.1	-	69536404,69537456,69537930,69538855	69536724,69537590,69538688,69539132	0.887640
testis_male_adult_54_years	chr2	70750344	70750362	70750361	-	RAMPAGE_only	6	6	11	0.408452	3.121928	chr2	70750336	70750808	LTR|ERVL-MaLR|MLT1C	+	chr2	70696290	70767469	ADD2|ENST00000425976.5	-	70696290,70704320,70706225,70713065,70767329	70696396,70704459,70706442,70713184,70767469	0.818182
testis_male_adult_54_years	chr3	126395263	126395264	126395263	+	High_confidence	5	6	7	0.259924	2.807355	chr3	126395285	126395388	SINE|MIR|MIR3	+	chr3	126395396	126414343	CFAP100|ENST00000510833.5	+	126395396,126395941,126407171,126414084	126395429,126396049,126407252,126414343	0.714286
testis_male_adult_54_years	chr17	16779477	16779524	16779513	+	RAMPAGE_only	8	8	26	0.965432	3.772055	chr17	16778735	16781272	LINE|L1|L1PB1	+	chr17	16720516	16796204	STRG.314649.6	+	16720516,16727526,16731799,16734689,16737537,16761424,16762312,16763964,16771976,16773496,16786947,16796042	16720658,16727740,16732666,16735643,16737675,16761718,16762533,16764175,16772019,16784480,16788135,16796204	0.923077
testis_male_adult_54_years	chr14	81192644	81192805	81192681	-	RAMPAGE_only	36	37	247	9.171607	6.218582	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81211843	STRG.286105.3	-	81175451,81192518,81196107,81197408,81201593,81203899	81185620,81192839,81196241,81197484,81201658,81211843	0.991903
testis_male_adult_54_years	chr1	95992009	95992037	95992025	+	High_confidence	236	245	940	34.904090	6.270731	chr1	95991930	95992507	LINE|L2|L2a	-	chr1	95992025	96022781	AC099566.1|ENST00000625774.2	+	95992025,96022532	95992509,96022781	0.934043
testis_male_adult_54_years	chr7	127112277	127112296	127112282	-	High_confidence	69	69	276	10.248435	6.985408	chr7	127112043	127112502	LINE|L2|L2a	+	chr7	127090922	127112286	GRM8|ENST00000473254.1	-	127090922,127105295,127106495,127111040,127112168	127091013,127105370,127106712,127111186,127112286	0.619565
testis_male_adult_54_years	chr3	11062264	11062265	11062264	+	High_confidence	34	34	37	1.373884	4.815623	chr3	11061208	11062580	LTR|ERV1|LTR12C	+	chr3	11062282	11062658	STRG.62743.1	+	11062282	11062658	0.513514
testis_male_adult_54_years	chr12	118139096	118139097	118139096	+	High_confidence	12	12	12	0.445584	3.251629	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.666667
testis_male_adult_54_years	chr14	53241916	53241917	53241916	+	RAMPAGE_only	11	11	14	0.519848	3.378783	chr14	53241925	53242201	LINE|L2|L2b	+	chr14	53213327	53244471	STRG.282573.13	+	53213327,53220432	53220410,53244471	1.000000
testis_male_adult_54_years	chr12	68870570	68870584	68870583	-	High_confidence	3	3	7	0.259924	2.807355	chr12	68870581	68870689	LTR|ERVL-MaLR|MLT1G	+	chr12	68866824	68870382	CPM|ENST00000546912.1	-	68866824,68869324,68870214	68867048,68869495,68870382	0.857143
testis_male_adult_54_years	chr2	65339080	65339090	65339084	-	High_confidence	2	2	8	0.297056	2.807355	chr2	65338266	65339718	Retroposon|SVA|SVA_D	+	chr2	65334628	65339205	STRG.39379.5	-	65334628,65338840	65334773,65339205	0.500000
testis_male_adult_54_years	chr4	162203598	162203621	162203601	-	High_confidence	7	8	26	0.965432	4.700440	chr4	162203406	162203891	LTR|ERV1|LTR12C	+	chr4	162163711	162203868	STRG.107229.1	-	162163711,162203387	162164589,162203868	0.769231
testis_male_adult_54_years	chr9	38571201	38571202	38571201	-	RAMPAGE_only	6	6	7	0.259924	2.584963	chr9	38571200	38571350	LINE|L1|L1MC4	+	chr9	38566259	38577156	STRG.201387.12	-	38566259,38569400,38571121,38575475,38577052	38569247,38569441,38572059,38575698,38577156	0.857143
testis_male_adult_54_years	chr7	96664252	96664285	96664259	-	High_confidence	21	22	97	3.601805	5.873872	chr7	96664131	96664701	LTR|ERVL-MaLR|MLT1E2	-	chr7	96645822	96664245	SEM1|ENST00000618028.4	-	96645822,96647428,96653744,96656456,96664166	96645936,96647540,96653838,96656585,96664245	0.587629
testis_male_adult_54_years	chr4	162740491	162740492	162740491	+	High_confidence	127	129	175	6.498102	5.570110	chr4	162739358	162740906	LTR|ERV1|LTR12C	+	chr4	162740667	162742048	AC005150.1|ENST00000512831.1	+	162740667,162741668	162740915,162742048	0.897143
testis_male_adult_54_years	chr17	7677675	7677698	7677675	-	High_confidence	2	2	7	0.259924	2.521641	chr17	7677629	7677804	LINE|L2|L2a	+	chr17	7675115	7677434	TP53|ENST00000508793.5	-	7675115,7675993,7676381,7676520,7677324	7675236,7676272,7676403,7676622,7677434	0.857143
testis_male_adult_54_years	chr4	82376019	82376031	82376030	-	RAMPAGE_only	3	3	6	0.222792	2.584963	chr4	82375960	82376092	LTR|LTR|LTR90B	+	chr4	82353313	82373996	HNRNPD|NM_031370.2	-	82353313,82355303,82356536,82356795,82357312,82358658,82359470,82371527,82373445	82354154,82355401,82356683,82356895,82357444,82358820,82359639,82371584,82373996	1.000000
testis_male_adult_54_years	chr2	45677020	45677029	45677028	+	High_confidence	253	256	389	14.444352	7.037196	chr2	45676813	45677075	LINE|L2|L2c	-	chr2	45676733	45845758	PRKCE|ENST00000467135.5	+	45676733,45677831,45697944,45700538,45701382,45840379,45842999,45845394	45676767,45677916,45698009,45700645,45701491,45840551,45843063,45845758	0.614396
testis_male_adult_54_years	chr19	49415739	49415764	49415739	-	High_confidence	5	5	15	0.556980	3.906891	chr19	49415716	49415857	SINE|MIR|MIRb	+	chr19	49412877	49415736	STRG.338630.1	-	49412877,49415673	49413380,49415736	0.533333
testis_male_adult_54_years	chr11	6992212	6992257	6992227	-	RAMPAGE_only	6	6	29	1.076828	4.504706	chr11	6991910	6992300	LTR|ERVL-MaLR|MLT1H	+	chr11	6961377	6998500	STRG.229951.7	-	6961377,6987882,6991872,6996935	6961737,6987922,6991993,6998500	0.724138
testis_male_adult_54_years	chr2	10412511	10412534	10412533	-	High_confidence	2	2	9	0.334188	2.750000	chr2	10412406	10412660	LTR|ERVL-MaLR|MLT1J2	-	chr2	10411224	10412415	STRG.30490.1	-	10411224	10412415	0.666667
testis_male_adult_54_years	chr14	102947703	102947727	102947726	-	RAMPAGE_only	10	11	25	0.928300	4.563856	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.600000
testis_male_adult_54_years	chr7	76464245	76464275	76464245	+	RAMPAGE_only	2	2	9	0.334188	3.000000	chr7	76464015	76464322	LINE|L2|L2c	-	chr7	76461726	76505991	DTX2|ENST00000430490.6	+	76461726,76463544,76480420,76482507,76492152,76497336,76500440,76502297,76503425,76504355,76505373	76461836,76463709,76480777,76483147,76492253,76497477,76500520,76502456,76503587,76504445,76505991	0.555556
testis_male_adult_54_years	chr9	113582165	113582240	113582239	+	High_confidence	7	7	28	1.039696	4.494680	chr9	113582216	113582304	SINE|MIR|MIRb	+	chr9	113581635	113597737	RGS3|ENST00000487344.1	+	113581635,113591332,113594429,113594918,113595598,113596767	113584427,113591397,113594531,113594980,113595765,113597737	1.000000
testis_male_adult_54_years	chr4	188796627	188796633	188796632	-	High_confidence	200	239	348	12.921940	6.784050	chr4	188796449	188796590	SINE|MIR|MIR	-	chr4	188777678	188796633	STRG.110750.4	-	188777678,188791071	188778051,188796633	0.931034
testis_male_adult_54_years	chr1	52911897	52911906	52911897	-	High_confidence	3	4	10	0.371320	3.169925	chr1	52911855	52912001	SINE|MIR|MIRc	+	chr1	52907838	52911888	ECHDC2|ENST00000492992.1	-	52907838,52911565,52911722	52907954,52911653,52911888	0.600000
testis_male_adult_54_years	chr18	67767050	67767072	67767050	-	RAMPAGE_only	11	11	21	0.779772	4.106603	chr18	67766919	67767231	DNA|TcMar-Tigger|Tigger3b	-	chr18	67707928	67708246	AC022655.2|ENST00000577280.1	-	67707928	67708246	0.761905
testis_male_adult_54_years	chr3	197299271	197299309	197299290	-	High_confidence	2	2	12	0.445584	3.459432	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.916667
testis_male_adult_54_years	chr1	9768181	9768226	9768190	-	RAMPAGE_only	6	6	33	1.225356	4.426109	chr1	9767916	9768151	SINE|MIR|MIR	-	chr1	9729027	9751581	CLSTN1|ENST00000435891.5	-	9729027,9731205,9731760,9733400,9733971,9734947,9735466,9735884,9741093,9743883,9744394,9749460,9749763,9751472	9730705,9731390,9731896,9733546,9734142,9735174,9735615,9736042,9741256,9744005,9744643,9749646,9749913,9751581	0.636364
testis_male_adult_54_years	chr10	34969878	34969909	34969902	+	High_confidence	6	6	26	0.965432	4.334963	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34969908	34975578	AL392046.2|ENST00000634331.1	+	34969908,34974657	34969954,34975578	0.500000
testis_male_adult_54_years	chr17	36492221	36492222	36492221	+	High_confidence	12	12	15	0.556980	3.906891	chr17	36492181	36492446	SINE|Alu|AluJo	-	chr17	36492223	36495312	ZNHIT3|ENST00000612494.4	+	36492223,36492812,36493925,36495222	36492459,36492899,36494006,36495312	0.666667
testis_male_adult_54_years	chr1	243221076	243221091	243221076	-	RAMPAGE_only	7	7	24	0.891168	4.053509	chr1	243221016	243221322	SINE|Alu|AluY	-	chr1	243125163	243200814	CEP170|ENST00000336415.8	-	243125163,243128248,243129359,243136142,243139936,243142285,243156220,243164283,243169627,243172696,243185778,243191017,243199059,243200517,243200776	243126738,243128300,243129453,243136231,243140107,243142463,243156455,243166116,243169754,243172846,243186422,243191494,243199194,243200680,243200814	0.750000
testis_male_adult_54_years	chr12	91634106	91634153	91634106	-	High_confidence	3	3	11	0.408452	3.277613	chr12	91633760	91635553	LTR|ERV1|LTR12C	+	chr12	91633416	91634561	STRG.258508.5	-	91633416	91634561	0.818182
testis_male_adult_54_years	chr3	100183924	100183967	100183924	-	RAMPAGE_only	3	3	10	0.371320	2.947703	chr3	100183754	100184191	LTR|ERVL|MLT2B4	+	chr3	100123661	100171528	STRG.73015.1	-	100123661,100149063,100149373,100151795,100162351,100162865,100171186,100171402	100123723,100149150,100149454,100151950,100162454,100162971,100171268,100171528	0.600000
testis_male_adult_54_years	chr20	47543352	47543354	47543352	+	RAMPAGE_only	5	9	11	0.408452	3.459432	chr20	47542998	47543392	LTR|ERVL-MaLR|MLT1F1	-	chr20	47501940	47655742	NCOA3|ENST00000371997.3	+	47501940,47583182,47622228,47623910,47625380,47627001,47627560,47627921,47633495,47634017,47635321,47635890,47637647,47639007,47639621,47639924,47642212,47647072,47649004,47650981,47652405,47652930,47653405	47502019,47583261,47622330,47624083,47625481,47627176,47627749,47628023,47633636,47634195,47635713,47636762,47637783,47639202,47639822,47640051,47642384,47647366,47649097,47651276,47652580,47653072,47655742	0.909091
testis_male_adult_54_years	chr4	158044572	158044625	158044592	-	High_confidence	11	20	44	1.633808	4.288391	chr4	158043998	158045477	LTR|ERV1|LTR12C	+	chr4	158033797	158044583	STRG.106725.1	-	158033797,158044033	158034159,158044583	0.954545
testis_male_adult_54_years	chr19	3743793	3743814	3743793	+	High_confidence	70	70	302	11.213867	6.762659	chr19	3743650	3743892	LTR|ERVL-MaLR|MLT1J	-	chr19	3743817	3750809	STRG.331606.2	+	3743817,3746010,3746484,3746775,3747793,3750137,3750581	3744034,3746081,3746695,3746876,3748081,3750184,3750809	0.973510
testis_male_adult_54_years	chr1	64202962	64203002	64203001	+	High_confidence	7	8	25	0.928300	4.584963	chr1	64202906	64203191	LINE|L2|L2c	-	chr1	64203021	64260694	STRG.8416.5	+	64203021,64205638,64206763,64210741,64214814,64220858,64241651,64260602	64204116,64205720,64206856,64210839,64214932,64220907,64241733,64260694	0.880000
testis_male_adult_54_years	chr2	72751192	72751193	72751192	-	RAMPAGE_only	8	8	8	0.297056	2.750000	chr2	72751082	72751591	LTR|ERV1|MER4B	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	1.000000
testis_male_adult_54_years	chr11	19505979	19506009	19505979	+	High_confidence	7	7	36	1.336752	4.511865	chr11	19505783	19506447	LTR|ERVL|LTR16D	-	chr11	19505925	19510302	STRG.231382.1	+	19505925,19508783,19510017	19506245,19508877,19510302	0.833333
testis_male_adult_54_years	chrX	93698397	93698433	93698397	+	RAMPAGE_only	3	3	12	0.445584	3.459432	chrX	93698397	93698820	LINE|L2|L2-3_Crp	-	chrX	93704444	93712265	STRG.366076.6	+	93704444,93709316	93708274,93712265	0.583333
testis_male_adult_54_years	chr6	24552290	24552302	24552301	-	RAMPAGE_only	3	3	7	0.259924	2.584963	chr6	24552185	24552388	SINE|MIR|MIR	+	chr6	24544103	24583227	KIAA0319|ENST00000616673.4	-	24544103,24551433,24554540,24556606,24559012,24563358,24564201,24566596,24568780,24569902,24572574,24576367,24578109,24579857,24580925,24582248,24583060	24547343,24551525,24554631,24556729,24559155,24563518,24564340,24566748,24568929,24570035,24572659,24576596,24578242,24579950,24581013,24582346,24583227	0.857143
testis_male_adult_54_years	chr7	11567325	11567346	11567335	-	RAMPAGE_only	4	4	18	0.668376	3.616875	chr7	11567110	11567490	LTR|ERVL-MaLR|THE1C	-	chr7	11446301	11543059	THSD7A|ENST00000497575.1	-	11446301,11447229,11541418,11542961	11446324,11447424,11541631,11543059	0.833333
testis_male_adult_54_years	chr2	63975547	63975593	63975579	-	High_confidence	8	8	18	0.668376	3.947703	chr2	63975185	63975865	LTR|ERV1|LTR8	+	chr2	63892900	63975602	VPS54|ENST00000354504.7	-	63892900,63897495,63899473,63912344,63912539,63913222,63914181,63916899,63919882,63920445,63921205,63933672,63942464,63944599,63949036,63962057,63965834,63968956,63972165,63974985	63893535,63897590,63899581,63912425,63912661,63913310,63914287,63916963,63919995,63920627,63921335,63934013,63942561,63944655,63949163,63962443,63965966,63968991,63972244,63975602	1.000000
testis_male_adult_54_years	chr3	25852565	25852600	25852599	+	High_confidence	198	203	380	14.110164	5.980951	chr3	25851590	25853021	LTR|ERV1|LTR12C	+	chr3	25852557	26143859	STRG.64894.1	+	25852557,26104961,26137224,26143593	25853025,26105211,26137297,26143859	0.850000
testis_male_adult_54_years	chr6	32120195	32120230	32120195	-	High_confidence	2	2	10	0.371320	3.169925	chr6	32120093	32120397	SINE|Alu|AluY	-	chr6	32118830	32120420	ATF6B|ENST00000492342.1	-	32118830,32118955,32119823	32118866,32119141,32120420	0.800000
testis_male_adult_54_years	chr1	79324844	79324895	79324894	-	High_confidence	10	10	37	1.373884	4.707715	chr1	79324743	79325260	LTR|ERV1|LTR8A	-	chr1	79323768	79324852	AL353651.2|ENST00000635706.1	-	79323768,79324585	79324060,79324852	0.729730
testis_male_adult_54_years	chr6	108443415	108443451	108443418	+	RAMPAGE_only	25	25	119	4.418709	5.730471	chr6	108443041	108443523	LTR|ERVL-MaLR|MLT1G1	-	chr6	108476978	108522465	AFG1L|ENST00000486863.1	+	108476978,108519696	108477292,108522465	0.554622
testis_male_adult_54_years	chr1	109212286	109212299	109212286	-	High_confidence	5	5	12	0.445584	3.095795	chr1	109212224	109212984	LTR|ERVL|MER21C	-	chr1	109206371	109211409	STRG.14327.1	-	109206371,109210795	109206487,109211409	0.833333
testis_male_adult_54_years	chr13	92484575	92484603	92484602	+	High_confidence	4	4	10	0.371320	3.121928	chr13	92484149	92484604	DNA|TcMar-Tigger|Tigger3b	-	chr13	92484605	92510094	GPC5-IT1|ENST00000416664.1	+	92484605,92509512	92484681,92510094	0.600000
testis_male_adult_54_years	chr16	10428921	10428937	10428936	+	High_confidence	4	4	8	0.297056	2.807355	chr16	10428876	10429027	SINE|Alu|AluJo	-	chr16	10428900	10483638	ATF7IP2|ENST00000568027.5	+	10428900,10430610,10433524,10438100,10440363,10472109,10473478,10473922,10480878,10481835	10429016,10431455,10433649,10438235,10440462,10472183,10473534,10473989,10480964,10483638	0.875000
testis_male_adult_54_years	chr14	81622920	81622921	81622920	-	High_confidence	10	10	13	0.482716	3.418296	chr14	81622661	81624332	LTR|ERV1|LTR12C	-	chr14	81617726	81623070	STRG.286324.1	-	81617726,81622652	81619372,81623070	0.769231
testis_male_adult_54_years	chr19	49717733	49717766	49717733	+	High_confidence	2	2	10	0.371320	2.921928	chr19	49717515	49717903	LTR|ERVL|LTR50	+	chr19	49717745	49720158	STRG.338694.1	+	49717745,49718671	49718002,49720158	0.700000
testis_male_adult_54_years	chr6	15758829	15758849	15758848	+	High_confidence	3	5	7	0.259924	2.807355	chr6	15757782	15759321	LTR|ERV1|LTR12C	-	chr6	15758824	15759598	STRG.136870.1	+	15758824	15759598	0.714286
testis_male_adult_54_years	chr3	151928137	151928190	151928177	-	High_confidence	50	51	155	5.755462	6.083637	chr3	151927972	151929469	LTR|ERV1|LTR12C	+	chr3	151751178	151928175	AADACL2-AS1|NR_110202.1	-	151751178,151755071,151774605,151927856	151751511,151755131,151774665,151928175	0.658065
testis_male_adult_54_years	chr8	10838072	10838099	10838072	-	RAMPAGE_only	4	4	15	0.556980	3.664498	chr8	10837845	10838230	LTR|ERV1|MER57C2	+	chr8	10765822	10839771	PINX1|ENST00000524114.5	-	10765822,10820192,10826151,10831664,10832891,10834665,10839707	10765916,10820269,10826244,10831743,10832984,10834775,10839771	0.733333
testis_male_adult_54_years	chr7	124288829	124288862	124288829	-	RAMPAGE_only	4	4	15	0.556980	3.521641	chr7	124288748	124288863	LINE|L2|L2c	+	chr7	124274678	124287544	AC006148.2|ENST00000467017.1	-	124274678,124287214	124274998,124287544	0.800000
testis_male_adult_54_years	chr10	133559103	133559137	133559136	-	RAMPAGE_only	21	22	52	1.930865	5.455153	chr10	133559108	133559272	DNA|hAT-Tip100|MER45A	+	chr10	133553900	133565583	SYCE1|ENST00000479535.2	-	133553900,133555350,133555596,133555779,133555980,133556758,133557066,133557863,133558166,133558876,133565456	133554328,133555438,133555707,133555903,133556047,133556822,133557156,133557918,133558214,133560153,133565583	0.865385
testis_male_adult_54_years	chr3	129014612	129014662	129014653	+	High_confidence	7	7	39	1.448148	4.836434	chr3	129014283	129014664	LTR|ERVL-MaLR|MLT1B	-	chr3	129014145	129015362	STRG.77568.1	+	129014145	129015362	0.948718
testis_male_adult_54_years	chr3	19688642	19688690	19688689	-	RAMPAGE_only	4	4	20	0.742640	4.142664	chr3	19687936	19692969	LINE|L1|L1PB1	+	chr3	19646619	19690682	STRG.64493.2	-	19646619,19688233	19647162,19690682	0.700000
testis_male_adult_54_years	chr11	10593125	10593126	10593125	+	High_confidence	7	7	10	0.371320	3.169925	chr11	10593095	10593151	SINE|MIR|MIRb	+	chr11	10593196	10599906	MRVI1-AS1|ENST00000525578.1	+	10593196,10593819,10594116,10595720,10599728	10593499,10593980,10594228,10595795,10599906	0.800000
testis_male_adult_54_years	chr9	111784059	111784062	111784059	-	High_confidence	3	3	8	0.297056	2.807355	chr9	111783697	111784151	LTR|ERVL|MER70A	-	chr9	111686572	111783971	STRG.209196.6	-	111686572,111691550,111693798,111694230,111699953,111702104,111705246,111706567,111707854,111713099,111718183,111723791,111727632,111738279,111741475,111746233,111748091,111756324,111758083,111758694,111775790,111780929,111783798	111686870,111692511,111693948,111694362,111700047,111702226,111705364,111706746,111707924,111714623,111722585,111723911,111728049,111738522,111741570,111746342,111748199,111756478,111758195,111758848,111775975,111781017,111783971	0.875000
testis_male_adult_54_years	chr4	147569473	147569522	147569473	+	High_confidence	3	3	14	0.519848	3.664498	chr4	147569488	147569742	LTR|ERVL|LTR16B1	+	chr4	147569195	147570292	STRG.105658.1	+	147569195	147570292	0.785714
testis_male_adult_54_years	chr22	36481305	36481335	36481305	-	High_confidence	9	9	40	1.485280	4.227567	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.900000
testis_male_adult_54_years	chr13	112503300	112503308	112503300	-	RAMPAGE_only	3	3	6	0.222792	2.584963	chr13	112503080	112503275	DNA|hAT-Charlie|Charlie16a	-	chr13	112485843	112588125	STRG.276723.4	-	112485843,112489580,112499044,112504031,112504625,112516439,112518974,112519885,112522319,112526941,112527373,112545698,112547619,112548107,112554056,112556051,112558195,112559321,112565110,112569151,112587904	112486151,112489697,112499185,112504163,112504714,112516575,112519043,112520021,112522509,112527050,112527484,112545865,112547752,112548176,112555005,112556224,112558413,112559399,112565178,112569259,112588125	0.666667
testis_male_adult_54_years	chr14	88627749	88627766	88627749	-	High_confidence	2	3	8	0.297056	2.521641	chr14	88627710	88627772	DNA|hAT-Ac|OldhAT1	-	chr14	88621209	88626941	EML5|ENST00000553320.5	-	88621209,88624969,88626837	88621301,88625127,88626941	0.625000
testis_male_adult_54_years	chr6	11417333	11417363	11417362	+	High_confidence	79	79	236	8.763155	6.615645	chr6	11416082	11417550	LTR|ERV1|LTR12C	-	chr6	11417349	11481239	AL445430.1|ENST00000419796.1	+	11417349,11461284,11480953	11417579,11461467,11481239	0.525424
testis_male_adult_54_years	chr9	62376800	62376801	62376800	-	High_confidence	13	13	16	0.594112	3.506891	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.750000
testis_male_adult_54_years	chr12	124840054	124840055	124840054	-	High_confidence	55	55	59	2.190789	5.062431	chr12	124840014	124840185	LINE|L1|L1MB3	-	chr12	124814972	124840163	STRG.262691.10	-	124814972,124817549,124840013	124815114,124817707,124840163	0.559322
testis_male_adult_54_years	chr20	15699855	15699856	15699855	+	High_confidence	233	235	301	11.176735	6.433857	chr20	15699592	15700275	LINE|L1|L1PB1	-	chr20	15699495	16053177	STRG.342361.1	+	15699495,15862744,15885763,15933275,15937475,15967552,15986726,15987065,16041200,16044570,16049829	15699991,15862826,15885811,15933338,15937544,15967630,15986801,15987158,16041278,16044639,16053177	0.850498
testis_male_adult_54_years	chr5	111826105	111826121	111826105	-	RAMPAGE_only	3	4	13	0.482716	3.700440	chr5	111825957	111826080	SINE|Alu|AluSz	-	chr5	111729302	111758218	NREP|NM_001142476.1	-	111729302,111735429,111755769,111757135,111757944	111731046,111735507,111755830,111757179,111758218	0.538462
testis_male_adult_54_years	chr11	67483524	67483545	67483524	+	High_confidence	4	6	13	0.482716	2.931209	chr11	67483483	67483576	SINE|5S-Deu-L2|AmnSINE1	+	chr11	67483515	67491108	AIP|NM_001302959.1	+	67483515,67487005,67489266,67490037,67490315,67490787	67483710,67487185,67489455,67490214,67490457,67491108	1.000000
testis_male_adult_54_years	chr7	53741277	53741292	53741291	+	High_confidence	14	14	32	1.188224	4.601410	chr7	53740958	53742326	LINE|L1|L1PA13	+	chr7	53741289	53741993	STRG.164373.1	+	53741289	53741993	0.968750
testis_male_adult_54_years	chr11	127021631	127021656	127021631	-	High_confidence	9	9	22	0.816904	4.201841	chr11	127021589	127021983	LTR|ERVL-MaLR|MLT1B	+	chr11	127020909	127021640	STRG.244412.1	-	127020909	127021640	0.681818
testis_male_adult_54_years	chr14	94581617	94581619	94581617	+	High_confidence	12	21	28	1.039696	4.423252	chr14	94581654	94581760	SINE|MIR|MIRb	+	chr14	94581614	94593115	SERPINA5|ENST00000554276.1	+	94581614,94587345,94590040,94590748,94592056	94581710,94587981,94590311,94590896,94593115	1.000000
testis_male_adult_54_years	chr4	119445487	119445508	119445507	-	RAMPAGE_only	6	6	14	0.519848	3.807355	chr4	119445177	119445605	LTR|ERVL-MaLR|MLT1D	+	chr4	119407966	119454628	STRG.101426.1	-	119407966,119410231,119412351,119413288,119419041,119419958,119420493,119422450,119429419,119431836,119434739,119440559,119442157,119444367,119445311,119448827,119450040,119454245,119454345	119410138,119410289,119412542,119413407,119419106,119420155,119420590,119422574,119429609,119431901,119434975,119441054,119442217,119444433,119445527,119448959,119450175,119454322,119454628	0.785714
testis_male_adult_54_years	chr12	131991163	131991183	131991182	+	RAMPAGE_only	13	14	20	0.742640	4.142664	chr12	131991086	131991241	SINE|MIR|MIRb	-	chr12	131960584	132081102	EP400|ENST00000389562.6	+	131960584,131979693,131981488,131982092,131986513,131987704,131989963,131990635,131991406,131992172,131994866,132005076,132006111,132006699,132011497,132013008,132013489,132013776,132017534,132018209,132020048,132021078,132023776,132025645,132027436,132028016,132029700,132029988,132031952,132037681,132037952,132043303,132043644,132044176,132044670,132044799,132045318,132045726,132050322,132050598,132053145,132053342,132054973,132055098,132062109,132062465,132064667,132066773,132067361,132069494,132076515,132077400	131961954,131979793,131981596,131982478,131986807,131987890,131990104,131990714,131991456,131992230,131994956,132005184,132006302,132006877,132011634,132013178,132013664,132013913,132017721,132018376,132020218,132021321,132023941,132025804,132027531,132028288,132029903,132030158,132032149,132037793,132038096,132043462,132043728,132044311,132044715,132044953,132045560,132045900,132050459,132050655,132053224,132053597,132055019,132055208,132062323,132062701,132064886,132066969,132067486,132069641,132076593,132081102	0.700000
testis_male_adult_54_years	chr20	4788969	4789011	4789001	-	RAMPAGE_only	12	12	35	1.299620	4.631293	chr20	4788805	4789036	SINE|MIR|MIR	-	chr20	4780022	4795504	RASSF2|ENST00000478553.1	-	4780022,4786230,4787632,4788216,4789595,4790450,4792538,4792993,4795255	4784342,4786328,4787701,4788268,4789697,4790611,4792627,4793054,4795504	0.914286
testis_male_adult_54_years	chr2	200857733	200857757	200857733	-	High_confidence	2	2	7	0.259924	2.807355	chr2	200857615	200857696	LINE|L1|L1MA8	-	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.857143
testis_male_adult_54_years	chr2	131629974	131629978	131629977	+	RAMPAGE_only	6	10	19	0.705508	3.836592	chr2	131629807	131630149	LINE|L1|L1PA13	+	chr2	131593426	131676380	STRG.46606.29	+	131593426,131594046,131597047,131600004,131601422,131604017,131609381,131611132,131612985,131625937	131593522,131596888,131597221,131600111,131601556,131604088,131609452,131611709,131613103,131676380	0.947368
testis_male_adult_54_years	chr12	127636112	127636113	127636112	-	High_confidence	4	4	6	0.222792	2.584963	chr12	127635504	127636140	LTR|ERVL|MER77B	-	chr12	127634095	127636095	LINC02411|ENST00000540490.5	-	127634095,127635357,127635943	127634746,127635402,127636095	0.666667
testis_male_adult_54_years	chr1	49257397	49257411	49257400	+	High_confidence	5	5	17	0.631244	3.969816	chr1	49257178	49257818	LINE|L1|L1PA3	-	chr1	49257411	49259299	STRG.6458.1	+	49257411	49259299	0.588235
testis_male_adult_54_years	chr5	96934279	96934306	96934288	+	RAMPAGE_only	5	5	16	0.594112	3.773557	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.750000
testis_male_adult_54_years	chr7	84880568	84880605	84880604	-	High_confidence	50	51	247	9.171607	6.661894	chr7	84880387	84881736	LTR|ERV1|LTR12C	+	chr7	84880149	84881112	STRG.166812.2	-	84880149	84881112	0.603239
testis_male_adult_54_years	chr19	11821934	11821965	11821934	+	RAMPAGE_only	3	4	12	0.445584	3.418296	chr19	11821832	11822388	LTR|ERVL|MER54A	-	chr19	11820003	11825888	STRG.332903.1	+	11820003	11825888	0.500000
testis_male_adult_54_years	chr2	109005950	109005986	109005981	-	High_confidence	29	29	173	6.423838	6.939204	chr2	109005908	109006090	LTR|ERVL-MaLR|MLT1J2	-	chr2	108997543	109005954	STRG.43813.1	-	108997543,109005771	108998526,109005954	0.612717
testis_male_adult_54_years	chr6	24258264	24258265	24258264	-	RAMPAGE_only	22	23	31	1.151092	4.582119	chr6	24258054	24258584	LTR|ERV1|LTR12	-	chr6	24171755	24205303	DCDC2|ENST00000378450.6	-	24171755,24178329,24205001	24174834,24178632,24205303	0.935484
testis_male_adult_54_years	chr5	25199031	25199032	25199031	-	High_confidence	20	20	21	0.779772	3.446439	chr5	25198616	25200586	LTR|ERV1|LTR12C	-	chr5	25198619	25199044	STRG.114895.1	-	25198619	25199044	0.904762
testis_male_adult_54_years	chr1	29166009	29166060	29166059	-	RAMPAGE_only	4	4	17	0.631244	3.734522	chr1	29165912	29166153	SINE|tRNA-RTE|MamSINE1	-	chr1	29154696	29160563	SRSF4|ENST00000497015.5	-	29154696,29159373,29160374	29154910,29159486,29160563	0.647059
testis_male_adult_54_years	chr8	31162736	31162756	31162742	+	RAMPAGE_only	13	13	42	1.559544	4.198059	chr8	31161866	31162817	DNA|TcMar-Tigger|Tigger3b	-	chr8	31087643	31173763	WRN|ENST00000521620.5	+	31087643,31088889,31090833,31091829,31096767,31100848,31111614,31116353,31120242,31124521,31124907,31132364,31141429,31141680,31142625,31143549,31147052,31147363,31150340,31154623,31157367,31167021,31172994	31087920,31088965,31090942,31091898,31096850,31100955,31111799,31116528,31120424,31124623,31125000,31132506,31141600,31141775,31142701,31143623,31147128,31147476,31150455,31154755,31157530,31167230,31173763	0.928571
testis_male_adult_54_years	chr2	179770527	179770528	179770527	-	High_confidence	10	10	10	0.371320	2.921928	chr2	179770512	179770864	DNA|TcMar-Tigger|Tigger16a	-	chr2	179443249	179769755	ZNF385B|ENST00000644742.1	-	179443249,179444875,179445549,179446524,179483271,179518527,179544826,179769502	179443468,179444977,179445728,179446770,179483434,179518638,179544969,179769755	1.000000
testis_male_adult_54_years	chr7	56388772	56388784	56388772	-	RAMPAGE_only	3	3	11	0.408452	3.321928	chr7	56388475	56388777	SINE|Alu|AluY	-	chr7	56370122	56448375	STRG.164693.3	-	56370122,56373432,56378628,56380739,56381681,56387406,56391151,56398082,56399425,56402950,56408693,56423689,56425224,56426134,56426834,56428384,56432487,56448218	56372769,56378536,56379112,56380930,56381804,56387471,56391266,56398272,56399512,56403111,56409209,56424637,56425348,56426263,56427010,56428441,56432701,56448375	0.727273
testis_male_adult_54_years	chr7	37492547	37492581	37492580	+	High_confidence	272	276	433	16.078161	5.778903	chr7	37491930	37492896	LTR|ERV1|LTR12D	+	chr7	37492540	37532560	STRG.162482.1	+	37492540,37530572	37493041,37532560	0.949192
testis_male_adult_54_years	chr9	84409262	84409263	84409262	+	High_confidence	5	5	8	0.297056	3.000000	chr9	84408306	84409815	LTR|ERV1|LTR12C	+	chr9	84409510	84619516	STRG.205403.1	+	84409510,84412081,84497468,84521061,84538990,84552233,84557435,84577531,84578770,84583196,84584082,84611636,84611849,84615073,84619288	84409840,84412198,84497746,84521225,84539083,84552323,84558054,84577658,84578869,84583283,84584222,84611749,84611997,84615204,84619516	1.000000
testis_male_adult_54_years	chr20	23667302	23667337	23667320	+	RAMPAGE_only	15	15	67	2.487845	5.608714	chr20	23667315	23667956	LINE|L2|L2b	-	chr20	23672607	23674376	STRG.342938.1	+	23672607,23673409,23674135	23672720,23673531,23674376	0.716418
testis_male_adult_54_years	chr8	30653972	30653982	30653972	-	RAMPAGE_only	5	5	15	0.556980	3.467720	chr8	30653838	30654118	SINE|Alu|AluJb	+	chr8	30607103	30657005	GTF2E2|ENST00000518599.5	-	30607103,30612298,30614607,30635031,30653432,30656868	30607150,30612481,30614715,30635123,30653602,30657005	0.600000
testis_male_adult_54_years	chr18	62832139	62832155	62832154	+	High_confidence	3	3	10	0.371320	3.169925	chr18	62832131	62832460	LINE|L2|L2b	-	chr18	62832159	62889665	PHLPP1|ENST00000588452.5	+	62832159,62838783,62860434,62889567	62832327,62838909,62860601,62889665	0.700000
testis_male_adult_54_years	chr2	218514436	218514447	218514446	-	High_confidence	18	18	29	1.076828	4.066109	chr2	218514118	218515155	LINE|L1|L1MC4a	-	chr2	218497768	218514428	USP37|ENST00000486242.1	-	218497768,218498025,218509978,218514259	218497857,218498157,218510140,218514428	0.793103
testis_male_adult_54_years	chr15	42638541	42638586	42638541	+	RAMPAGE_only	9	11	23	0.854036	4.175736	chr15	42638526	42638654	SINE|MIR|MIR3	-	chr15	42629841	42670050	STARD9|ENST00000568493.1	+	42629841,42634855,42637906,42638025,42638699,42651015,42652519,42661157,42662793,42663280,42669157	42630146,42634972,42637939,42638087,42638812,42651085,42652592,42661225,42662891,42663917,42670050	0.695652
testis_male_adult_54_years	chr2	159391292	159391293	159391292	-	High_confidence	18	18	21	0.779772	4.297079	chr2	159391286	159391428	DNA|TcMar-Tigger|Tigger3c	+	chr2	159385291	159392207	BAZ2B|ENST00000485917.1	-	159385291,159386352,159389344,159392118	159385369,159386607,159389485,159392207	0.571429
testis_male_adult_54_years	chr4	2762744	2762745	2762744	-	High_confidence	175	175	190	7.055082	5.012586	chr4	2762353	2763411	LTR|ERV1|LTR12E	-	chr4	2761834	2762761	STRG.88033.1	-	2761834	2762761	0.973684
testis_male_adult_54_years	chr11	46643155	46643202	46643166	+	RAMPAGE_only	10	10	74	2.747769	5.693048	chr11	46642918	46643446	LTR|ERV1|MER101B	-	chr11	46617599	46672726	ATG13|ENST00000528494.5	+	46617599,46644278,46645338,46645869,46649136,46650176,46656232,46657094,46657523,46659391,46663996,46664848,46665382,46667772,46668498,46668793,46669403,46672254	46617890,46644360,46645419,46645989,46649183,46650317,46656273,46657191,46657622,46659485,46664095,46664959,46665519,46667887,46668576,46668910,46669532,46672726	0.554054
testis_male_adult_54_years	chr4	168263672	168263703	168263672	-	High_confidence	5	6	17	0.631244	3.404543	chr4	168263492	168263856	LTR|ERVL-MaLR|MLT1A0	+	chr4	168252573	168263671	DDX60|ENST00000505393.1	-	168252573,168255710,168260864,168261999,168262682,168263527	168252656,168255869,168260989,168262128,168262787,168263671	0.941176
testis_male_adult_54_years	chr6	3254403	3254404	3254403	+	High_confidence	170	174	201	7.463534	6.482011	chr6	3253403	3254826	LTR|ERV1|LTR12C	+	chr6	3254410	3267781	STRG.134802.4	+	3254410,3263683,3267590	3255229,3263759,3267781	0.955224
testis_male_adult_54_years	chr1	227393587	227393625	227393587	+	High_confidence	3	3	10	0.371320	2.921928	chr1	227393423	227393801	LTR|ERVL-MaLR|MLT1C	+	chr1	227393590	227431035	LINC01641|ENST00000445817.1	+	227393590,227395518,227409754,227429404	227393704,227395614,227409884,227431035	0.600000
testis_male_adult_54_years	chr16	29962939	29962940	29962939	+	High_confidence	12	12	15	0.556980	3.506891	chr16	29962944	29963068	SINE|MIR|MIRc	+	chr16	29963171	29973048	TMEM219|ENST00000570255.5	+	29963171,29963399,29968024,29971407,29972041,29972949	29963308,29963589,29968254,29971578,29972140,29973048	1.000000
testis_male_adult_54_years	chr20	50559377	50559398	50559397	+	RAMPAGE_only	20	20	51	1.893733	4.829449	chr20	50559285	50560592	LINE|L1|HAL1	-	chr20	50510357	50585241	STRG.345891.2	+	50510357,50561362,50564968,50568379,50574516,50578419,50579167,50579702,50581264	50510590,50561453,50565069,50568478,50574654,50578629,50579329,50579926,50585241	0.921569
testis_male_adult_54_years	chr13	22040816	22040852	22040816	+	High_confidence	9	9	49	1.819469	5.053286	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.755102
testis_male_adult_54_years	chr16	55586978	55586981	55586980	-	High_confidence	4	8	9	0.334188	3.000000	chr16	55586655	55587142	LTR|ERV1|LTR12B	-	chr16	55586557	55586994	STRG.307034.1	-	55586557	55586994	0.555556
testis_male_adult_54_years	chr17	55458493	55458529	55458528	-	High_confidence	10	10	50	1.856601	5.251629	chr17	55458350	55459213	LTR|ERV1|LTR1A2	+	chr17	55448512	55458514	STRG.319766.1	-	55448512,55453925,55458224	55450298,55454098,55458514	0.880000
testis_male_adult_54_years	chr11	307588	307600	307588	+	High_confidence	6	6	10	0.371320	2.725481	chr11	307491	307788	SINE|Alu|AluY	-	chr11	307926	309392	IFITM2|ENST00000616316.1	+	307926,309012	308438,309392	0.600000
testis_male_adult_54_years	chr1	29047434	29047463	29047434	+	RAMPAGE_only	3	3	16	0.594112	3.640224	chr1	29047240	29047553	SINE|Alu|AluJo	-	chr1	29053163	29097904	EPB41|ENST00000646871.1	+	29053163,29058588,29064981,29096154,29097806	29053312,29058645,29065158,29096604,29097904	0.812500
testis_male_adult_54_years	chr1	201003100	201003120	201003100	-	RAMPAGE_only	5	6	9	0.334188	3.000000	chr1	201002965	201003199	LINE|L2|L2c	+	chr1	200972989	201023408	KIF21B|ENST00000360529.9	-	200972989,200974713,200975498,200976775,200977211,200979534,200980959,200984858,200986843,200986995,200988295,200988492,200988765,200989941,200990137,200990575,200990916,200991656,200992281,200996195,200998383,200999348,200999882,201000389,201000716,201002160,201003585,201004339,201004765,201005307,201005544,201008768,201009265,201023342	200973578,200974913,200975669,200976893,200977376,200979715,200981096,200984972,200986918,200987201,200988353,200988544,200988931,200990043,200990332,200990723,200991149,200991725,200992389,200996395,200998575,200999466,200999964,201000608,201000780,201002350,201003781,201004455,201004933,201005442,201005694,201008951,201009488,201023408	0.888889
testis_male_adult_54_years	chr13	47945895	47945988	47945978	-	High_confidence	15	16	162	6.015386	6.280764	chr13	47945691	47946353	DNA|TcMar-Tigger|MER44D	+	chr13	47936617	47945939	SUCLA2|ENST00000481279.2	-	47936617,47943344,47945730	47936773,47943445,47945939	0.722222
testis_male_adult_54_years	chr19	3763100	3763121	3763100	+	High_confidence	2	2	11	0.408452	3.321928	chr19	3763128	3763218	SINE|MIR|MIR3	+	chr19	3762666	3767565	MRPL54|NM_172251.2	+	3762666,3765165,3767260	3762818,3765331,3767565	0.545455
testis_male_adult_54_years	chr8	100303256	100303281	100303280	-	High_confidence	3	3	6	0.222792	2.584963	chr8	100303086	100303537	LTR|ERVL-MaLR|MLT1D	-	chr8	100257058	100303259	RNF19A|NM_015435.4	-	100257058,100259853,100261541,100264033,100264670,100268784,100269868,100274952,100287500,100300527,100303159	100259246,100259997,100261755,100264195,100264785,100268947,100270013,100275161,100288267,100300651,100303259	0.500000
testis_male_adult_54_years	chr11	7894119	7894174	7894129	-	RAMPAGE_only	5	5	32	1.188224	4.875000	chr11	7893353	7894436	LINE|L2|L2c	+	chr11	7754392	7882982	AC044810.2|ENST00000529488.5	-	7754392,7879006,7879594,7881088,7881955,7882859	7754521,7879083,7879713,7881182,7882073,7882982	0.500000
testis_male_adult_54_years	chr9	130079507	130079517	130079507	+	RAMPAGE_only	3	3	8	0.297056	2.521641	chr9	130079384	130079578	SINE|MIR|MIRb	+	chr9	130053924	130136123	GPR107|ENST00000610997.1	+	130053924,130075635,130076411,130077298,130079629,130083564,130086419,130090875,130092247,130099456,130100628,130101105,130104419,130107495,130110369,130114572,130124914,130127482,130128639,130135024	130054073,130075749,130076462,130077378,130079769,130083602,130086476,130090983,130092381,130099532,130100702,130101223,130104550,130107539,130110422,130114663,130124964,130127566,130128761,130136123	0.875000
testis_male_adult_54_years	chr22	23016497	23016498	23016497	-	High_confidence	487	490	548	20.348342	4.825723	chr22	23016096	23017584	LTR|ERV1|LTR12C	-	chr22	23012364	23016506	STRG.354879.1	-	23012364,23016092	23014683,23016506	0.947080
testis_male_adult_54_years	chr4	165365328	165365349	165365328	+	High_confidence	5	5	16	0.594112	3.327820	chr4	165365293	165365726	LTR|ERVL|LTR16A	-	chr4	165365360	165366235	STRG.107604.1	+	165365360	165366235	0.937500
testis_male_adult_54_years	chr10	114612129	114612147	114612146	-	RAMPAGE_only	33	33	56	2.079393	5.342579	chr10	114612100	114612484	LTR|ERVL-MaLR|MSTD	+	chr10	114451644	114632313	STRG.226411.10	-	114451644,114465697,114468180,114472976,114473878,114487957,114491790,114545004,114547649,114571296,114575415,114601826,114631901	114453483,114465827,114468216,114473132,114473956,114488016,114491878,114545098,114547776,114571406,114575599,114601961,114632313	0.767857
testis_male_adult_54_years	chr6	17015816	17015817	17015816	+	High_confidence	399	417	528	19.605702	6.960905	chr6	17015186	17016323	LTR|ERV1|LTR12D	-	chr6	17015824	17124164	STRG.136979.2	+	17015824,17018129,17114961,17120606	17015925,17018277,17115139,17124164	0.625000
testis_male_adult_54_years	chr13	24339253	24339254	24339253	-	High_confidence	12	12	13	0.482716	3.084963	chr13	24338722	24339953	LTR|ERV1|LTR12D	+	chr13	24338889	24339221	STRG.265172.2	-	24338889	24339221	0.769231
testis_male_adult_54_years	chr4	20392139	20392175	20392163	+	High_confidence	80	85	287	10.656887	6.087839	chr4	20392050	20393212	DNA|TcMar-Tigger|Tigger3b	-	chr4	20392188	20394856	SLIT2-IT1|ENST00000515882.1	+	20392188,20393349,20393565,20394528	20392263,20393453,20393659,20394856	0.968641
testis_male_adult_54_years	chr9	99665489	99665497	99665496	-	High_confidence	5	5	12	0.445584	3.418296	chr9	99665070	99666109	LINE|L2|L2a	-	chr9	99660126	99665278	STRG.207449.1	-	99660126	99665278	0.750000
testis_male_adult_54_years	chr21	10589418	10589425	10589418	+	RAMPAGE_only	2	2	6	0.222792	2.584963	chr21	10588379	10589531	LINE|L1|L1PA16	-	chr21	10521574	10605716	TPTE|ENST00000612746.1	+	10521574,10524579,10527354,10559493,10561029,10567669,10569436,10569682,10570484,10577459,10578336,10578516,10590461,10592292,10595981,10598014,10602057,10603561,10605416	10521694,10524688,10527412,10559544,10561191,10567789,10569536,10569746,10570549,10577520,10578418,10578605,10590523,10592373,10596087,10598094,10602150,10603632,10605716	0.833333
testis_male_adult_54_years	chr6	105176284	105176294	105176293	-	High_confidence	9	10	21	0.779772	4.037401	chr6	105176149	105176515	LTR|ERV1|MER57D	-	chr6	105157899	105176255	POPDC3|NR_024539.1	-	105157899,105159710,105161795,105176192	105158751,105159819,105162160,105176255	0.904762
testis_male_adult_54_years	chr1	195055328	195055332	195055328	+	High_confidence	16	16	29	1.076828	4.039149	chr1	195054147	195055646	LTR|ERV1|LTR12C	+	chr1	195055422	195055748	STRG.22124.1	+	195055422	195055748	0.862069
testis_male_adult_54_years	chr20	52175983	52176010	52175983	-	High_confidence	13	13	74	2.747769	5.109665	chr20	52175981	52176114	LTR|ERVL-MaLR|MLT1O	+	chr20	52088959	52176037	ZFP64|ENST00000477786.5	-	52088959,52097372,52098437,52160122,52164694,52165863,52175926	52089067,52097435,52098587,52160374,52164757,52166025,52176037	0.905405
testis_male_adult_54_years	chr13	97575235	97575276	97575275	-	High_confidence	8	11	30	1.113960	4.155046	chr13	97575105	97575332	SINE|MIR|MIR	+	chr13	97574920	97575444	STRG.274750.1	-	97574920	97575444	0.666667
testis_male_adult_54_years	chr6	20033126	20033127	20033126	+	High_confidence	71	72	74	2.747769	4.982648	chr6	20032173	20033467	LTR|ERV1|LTR12C	+	chr6	20033139	20035128	STRG.137421.1	+	20033139	20035128	0.972973
testis_male_adult_54_years	chr10	80354363	80354379	80354375	-	RAMPAGE_only	2	3	9	0.334188	2.750000	chr10	80354205	80354509	SINE|Alu|AluSq2	+	chr10	80336107	80352727	DYDC1|ENST00000421924.6	-	80336107,80338466,80339096,80342268,80351900,80352454	80336185,80338571,80339153,80342361,80352002,80352727	0.888889
testis_male_adult_54_years	chr7	96358540	96358552	96358551	+	High_confidence	4	4	8	0.297056	2.807355	chr7	96358348	96359121	LTR|ERV1|LTR17	-	chr7	96358576	96359733	STRG.169232.1	+	96358576	96359733	0.625000
testis_male_adult_54_years	chr1	53239203	53239234	53239233	+	High_confidence	5	5	12	0.445584	2.913977	chr1	53239209	53239369	DNA|hAT-Charlie|MER5B	+	chr1	53238609	53242783	AL606760.1|ENST00000458151.1	+	53238609,53241846,53242437	53239345,53241945,53242783	0.916667
testis_male_adult_54_years	chr14	76596023	76596077	76596053	-	High_confidence	4	5	19	0.705508	3.947703	chr14	76595645	76596058	LINE|L1|L1M8	+	chr14	76593097	76596029	STRG.286459.3	-	76593097,76595194	76594634,76596029	0.947368
testis_male_adult_54_years	chr1	230272083	230272110	230272109	-	High_confidence	38	38	137	5.087086	6.321697	chr1	230271314	230272176	LTR|ERVL|MER21C	-	chr1	230259276	230272106	STRG.26511.1	-	230259276,230268302,230271669	230259763,230268516,230272106	0.839416
testis_male_adult_54_years	chrY	3809629	3809635	3809629	+	RAMPAGE_only	4	4	10	0.371320	2.641604	chrY	3809554	3811618	LINE|L1|L1PBa	+	chrY	3786278	3838594	STRG.371674.1	+	3786278,3800441,3803828,3804384	3786390,3800746,3803952,3838594	0.900000
testis_male_adult_54_years	chr1	216136747	216136752	216136751	+	High_confidence	38	43	60	2.227921	5.008288	chr1	216136557	216136972	LTR|ERVL-MaLR|MLT1C	+	chr1	216136756	216137628	STRG.24940.1	+	216136756	216137628	0.900000
testis_male_adult_54_years	chr16	20674497	20674498	20674497	+	High_confidence	403	409	569	21.128114	6.372009	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.778559
testis_male_adult_54_years	chr19	5680233	5680252	5680240	-	High_confidence	6	6	17	0.631244	3.875000	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.882353
testis_male_adult_54_years	chr6	26123039	26123053	26123047	-	High_confidence	21	21	40	1.485280	4.603056	chr6	26122928	26123343	LTR|ERV1|MER101	-	chr6	26114872	26123910	HIST1H2BC|ENST00000314332.5	-	26114872,26123514	26115135,26123910	0.725000
testis_male_adult_54_years	chr12	9407453	9407507	9407506	-	RAMPAGE_only	21	22	55	2.042261	5.229618	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9396582	9435575	STRG.246790.2	-	9396582,9397614,9398381,9399794,9400235,9401746,9402426,9406307,9407307,9408855,9412071,9413125,9413718,9414291,9418774,9419111,9419488,9419980,9420172,9420514,9421387,9421817,9424527,9425470,9425715,9426081,9427632,9427820,9429131,9429559,9430587,9432365,9433307,9434094	9397214,9397689,9398484,9400015,9400326,9401859,9402553,9406408,9407452,9408949,9412252,9413194,9413826,9418699,9418929,9419190,9419573,9420081,9420255,9420664,9421491,9421965,9424640,9425602,9425824,9426120,9427700,9427865,9429211,9429606,9430740,9433056,9433415,9435575	0.890909
testis_male_adult_54_years	chr16	20676155	20676202	20676201	-	High_confidence	17	17	90	3.341881	6.186189	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.722222
testis_male_adult_54_years	chr6	4688096	4688123	4688111	+	RAMPAGE_only	78	78	143	5.309878	6.078842	chr6	4688157	4688826	LINE|L1|L1MEh	+	chr6	4702462	4703779	PSMC1P11|ENST00000405257.1	+	4702462	4703779	0.664336
testis_male_adult_54_years	chr15	51068026	51068027	51068026	-	RAMPAGE_only	14	16	17	0.631244	3.625000	chr15	51067462	51068075	DNA|hAT-Charlie|Charlie7	+	chr15	51039044	51077741	STRG.294519.1	-	51039044,51043650,51070167	51043602,51069606,51077741	0.941176
testis_male_adult_54_years	chr5	38558781	38558802	38558781	+	High_confidence	6	6	19	0.705508	4.247928	chr5	38558567	38558913	LTR|ERVL-MaLR|THE1D	-	chr5	38558829	38671216	LIFR-AS1|ENST00000500817.2	+	38558829,38594921,38640928,38644349,38646631,38647232,38653076,38653864,38671025	38559177,38595069,38641029,38644445,38646714,38647435,38653160,38653952,38671216	0.631579
testis_male_adult_54_years	chr13	102367356	102367399	102367398	-	High_confidence	30	40	102	3.787465	6.452718	chr13	102367044	102367593	LTR|ERVL-MaLR|MLT1F	-	chr13	102292686	102367399	FGF14-IT1|ENST00000437115.2	-	102292686,102354109,102366444,102367256	102294040,102354222,102366613,102367399	0.578431
testis_male_adult_54_years	chr7	64839938	64839939	64839938	-	High_confidence	13	13	13	0.482716	3.700440	chr7	64839812	64840158	LTR|ERV1|HERV-Fc1_LTR1	-	chr7	64839145	64839951	STRG.165387.1	-	64839145	64839951	0.769231
testis_male_adult_54_years	chr2	121737484	121737499	121737498	-	High_confidence	2	2	8	0.297056	2.521641	chr2	121737438	121737760	SINE|Alu|AluSq2	-	chr2	121726944	121736927	NIFK|NM_032390.4	-	121726944,121728287,121728476,121730892,121732095,121735612,121736745	121727912,121728356,121728536,121731104,121732204,121735750,121736927	0.750000
testis_male_adult_54_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	25	25	42	1.559544	4.836434	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.833333
testis_male_adult_54_years	chr2	231961327	231961340	231961327	+	High_confidence	3	4	8	0.297056	2.750000	chr2	231961033	231961334	LINE|L2|L2c	+	chr2	231961244	232344350	DIS3L2|ENST00000273009.10	+	231961244,232014834,232015513,232024276,232029978,232087486,232130618,232136471,232163458,232210325,232238532,232249238,232263206,232343344	231961765,232014979,232015671,232024330,232030080,232087721,232130719,232136719,232163632,232210405,232238645,232249346,232263362,232344350	1.000000
testis_male_adult_54_years	chr17	42117109	42117136	42117109	-	RAMPAGE_only	5	5	21	0.779772	4.201841	chr17	42117078	42117181	LINE|CR1|L3	+	chr17	42114223	42115833	KAT2A|ENST00000588759.1	-	42114223,42114357,42114489,42114953,42115722	42114282,42114394,42114604,42115035,42115833	0.571429
testis_male_adult_54_years	chr8	120761252	120761258	120761257	+	High_confidence	3	3	6	0.222792	2.584963	chr8	120761093	120761361	LINE|L1|L1MCb	+	chr8	120761252	120776832	LOC101927543|NR_125419.1	+	120761252,120765777,120768658,120775274,120776358	120761372,120765864,120769698,120775526,120776832	0.833333
testis_male_adult_54_years	chr5	7230407	7230438	7230437	+	High_confidence	19	19	30	1.113960	4.375222	chr5	7230410	7230536	LTR|ERVL|LTR33A	-	chr5	7230444	7230921	STRG.111982.1	+	7230444	7230921	0.733333
testis_male_adult_54_years	chr1	15171654	15171685	15171675	-	High_confidence	4	4	11	0.408452	3.027169	chr1	15171283	15171781	LTR|ERVL|LTR33C	-	chr1	15168473	15171624	C1orf195|NM_001278501.1	-	15168473,15171180,15171610	15168777,15171315,15171624	0.727273
testis_male_adult_54_years	chr7	137268239	137268283	137268265	-	High_confidence	4	4	25	0.928300	4.403856	chr7	137267941	137268351	LTR|ERV1|HERVE_a-int	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.880000
testis_male_adult_54_years	chr9	68323809	68323810	68323809	+	High_confidence	7	7	9	0.334188	2.947703	chr9	68323225	68323827	LTR|ERV1|HERVE-int	-	chr9	68323606	68330626	AL353608.3|ENST00000414223.4	+	68323606,68325033,68326262,68330125	68323825,68325257,68328690,68330626	0.777778
testis_male_adult_54_years	chr19	37506274	37506345	37506291	-	High_confidence	15	16	82	3.044825	6.058925	chr19	37505997	37506297	LTR|ERVL|LTR16C	+	chr19	37497362	37506498	STRG.336553.1	-	37497362,37504460,37505845,37506244	37497592,37504641,37506040,37506498	0.500000
testis_male_adult_54_years	chr1	247879438	247879451	247879450	-	High_confidence	36	37	94	3.490409	5.129099	chr1	247879033	247880115	LINE|L2|L2a	+	chr1	247875661	247879428	STRG.29006.1	-	247875661,247879120	247876530,247879428	0.851064
testis_male_adult_54_years	chr5	180831085	180831116	180831085	-	High_confidence	3	3	12	0.445584	3.277613	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180829953	180831605	HEIH|ENST00000623091.1	-	180829953	180831605	0.833333
testis_male_adult_54_years	chr20	14929504	14929518	14929504	-	High_confidence	269	269	588	21.833623	6.662296	chr20	14929081	14929880	LTR|ERVL|MER21C	-	chr20	14884252	14929518	MACROD2-AS1|NR_037841.3	-	14884252,14888095,14929374	14884594,14888304,14929518	0.809524
testis_male_adult_54_years	chr4	93195970	93195987	93195974	+	RAMPAGE_only	6	6	22	0.816904	4.392317	chr4	93195911	93196690	LTR|Gypsy|MamGypsy2-I	-	chr4	93203948	93284614	STRG.98732.4	+	93203948,93207403,93216737,93221239,93224613,93238370,93258895,93282376	93204086,93207457,93216911,93221385,93224775,93238490,93258943,93284614	0.590909
testis_male_adult_54_years	chr22	36481205	36481206	36481205	-	High_confidence	14	14	16	0.594112	3.456565	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.875000
testis_male_adult_54_years	chr14	53169009	53169034	53169028	+	RAMPAGE_only	11	16	57	2.116525	4.923882	chr14	53168732	53169339	LTR|ERV1|MER50	-	chr14	53162796	53171572	STRG.282573.3	+	53162796,53165921,53168248	53162909,53165999,53171572	0.912281
testis_male_adult_54_years	chr5	160197543	160197607	160197606	+	RAMPAGE_only	10	11	43	1.596676	4.813136	chr5	160197581	160197748	DNA|hAT-Charlie|MER20	-	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.813953
testis_male_adult_54_years	chr7	103274363	103274461	103274363	-	RAMPAGE_only	23	24	111	4.121653	5.626060	chr7	103274079	103275487	LTR|ERV1|LTR12C	-	chr7	103175132	103280219	DPY19L2P2|ENST00000439473.5	-	103175132,103184001,103185437,103195439,103197186,103198594,103210266,103212160,103214000,103216462,103225104,103233799,103234648,103237755,103238802,103240561,103242988,103254781,103257603,103271731,103274069,103277613,103279832	103175411,103184127,103185537,103195614,103197306,103198619,103210313,103212232,103214102,103216543,103225164,103233886,103234726,103237855,103238871,103240653,103243046,103254875,103257724,103271869,103275627,103277638,103280219	0.810811
testis_male_adult_54_years	chr3	36633915	36633930	36633915	-	RAMPAGE_only	1	2	7	0.259924	2.584963	chr3	36633723	36635586	LTR|ERV1|LTR12C	+	chr3	36616005	36637457	NBPF21P|ENST00000425093.1	-	36616005,36618146,36626585,36628430,36629534,36630578,36631690,36633516,36637319	36616212,36618363,36626766,36628485,36629742,36630654,36631918,36633657,36637457	0.571429
testis_male_adult_54_years	chr2	191245143	191245195	191245143	+	High_confidence	6	6	25	0.928300	4.563856	chr2	191245108	191245343	LINE|L1|L1M4b	+	chr2	191245184	191346274	MYO1B|ENST00000418908.5	+	191245184,191276886,191296110,191329934,191341460,191346235	191245257,191277030,191296226,191330029,191341565,191346274	0.880000
testis_male_adult_54_years	chr17	60887025	60887026	60887025	+	High_confidence	4	5	7	0.259924	2.807355	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.857143
testis_male_adult_54_years	chr21	35815048	35815102	35815048	-	RAMPAGE_only	9	10	43	1.596676	4.795581	chr21	35815014	35815263	LINE|L2|L2c	+	chr21	35064605	35887915	STRG.351362.8	-	35064605,35461960,35580659,35864284,35886209	35065072,35462025,35580929,35864467,35887915	0.651163
testis_male_adult_54_years	chr16	15006394	15006422	15006394	+	RAMPAGE_only	13	18	28	1.039696	4.182006	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.714286
testis_male_adult_54_years	chr22	26735092	26735093	26735092	+	RAMPAGE_only	11	12	13	0.482716	3.700440	chr22	26735080	26735127	LINE|L2|L2c	-	chr22	26736883	26741895	STRG.354262.5	+	26736883,26740331	26738240,26741895	0.769231
testis_male_adult_54_years	chr13	24968452	24968477	24968471	-	RAMPAGE_only	25	26	57	2.116525	5.521641	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24936087	24969551	STRG.264728.2	-	24936087,24941986,24942931,24951396,24954776,24967391	24940785,24942108,24943021,24951488,24954869,24969551	0.719298
testis_male_adult_54_years	chr17	31762436	31762437	31762436	+	High_confidence	36	36	38	1.411016	4.614369	chr17	31762038	31762862	LTR|ERV1|LTR12	+	chr17	31762439	31769048	AC007923.1|ENST00000577970.1	+	31762439,31769006	31762902,31769048	0.868421
testis_male_adult_54_years	chr1	1721622	1721637	1721636	-	High_confidence	100	106	258	9.580059	6.695517	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1635586	1721655	STRG.118.16	-	1635586,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1708864,1712263,1716345,1719327,1721595	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641723,1709640,1712400,1716478,1719455,1721655	0.961240
testis_male_adult_54_years	chr17	57608525	57608549	57608548	+	RAMPAGE_only	2	2	7	0.259924	2.584963	chr17	57608547	57608705	DNA|hAT-Tip100|MER45A	+	chr17	57596902	57616631	MSI2|ENST00000577241.1	+	57596902,57615969	57596950,57616631	0.571429
testis_male_adult_54_years	chr14	53217621	53217712	53217654	+	High_confidence	112	125	406	15.075597	7.114888	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217711	53687258	AL365295.1|ENST00000456100.5	+	53217711,53318030,53369451,53687198	53218055,53318138,53369501,53687258	0.507389
testis_male_adult_54_years	chrY	12686572	12686590	12686572	+	RAMPAGE_only	2	2	8	0.297056	3.000000	chrY	12685409	12686624	LTR|ERV1|MER4-int	+	chrY	12701230	12860839	USP9Y|ENST00000338981.7	+	12701230,12708633,12709387,12720588,12722107,12725112,12726574,12735611,12735997,12736410,12738156,12739524,12757191,12758505,12760483,12771067,12773582,12775470,12776648,12778018,12778605,12779525,12786202,12786521,12790406,12791498,12793031,12810178,12810671,12811634,12812829,12816123,12818419,12833687,12837910,12839863,12841009,12842239,12843063,12846332,12846932,12847238,12856339,12856632,12857565,12859278	12702055,12708693,12709543,12720737,12722187,12725225,12726793,12735727,12736249,12736549,12738309,12739629,12757398,12758642,12760617,12771155,12773925,12775566,12776860,12778259,12778755,12779646,12786333,12786800,12790532,12791624,12793201,12810287,12810818,12811781,12813052,12816344,12818610,12833861,12838052,12840614,12841133,12842465,12843193,12846518,12847153,12847327,12856496,12856845,12857661,12860839	0.625000
testis_male_adult_54_years	chr12	97641875	97641879	97641875	+	High_confidence	5	5	10	0.371320	2.721928	chr12	97641448	97642024	LINE|L1|L1MA8	-	chr12	97641894	97642278	STRG.259572.1	+	97641894	97642278	0.800000
testis_male_adult_54_years	chr5	27217713	27217718	27217713	+	High_confidence	40	40	84	3.119089	5.849607	chr5	27217510	27218349	LTR|ERV1|LTR1A2	+	chr5	27217731	27219009	STRG.115075.1	+	27217731	27219009	0.940476
testis_male_adult_54_years	chr13	89550840	89550853	89550852	+	High_confidence	129	129	275	10.211303	7.039847	chr13	89550569	89551274	LTR|ERV1|LTR12_	+	chr13	89550830	89552341	STRG.273697.1	+	89550830,89551096,89552104	89550972,89551277,89552341	0.705455
testis_male_adult_54_years	chr7	23046804	23046830	23046804	-	RAMPAGE_only	6	10	31	1.151092	4.228165	chr7	23045311	23047416	Retroposon|SVA|SVA_D	-	chr7	22941258	23014151	FAM126A|NM_032581.3	-	22941258,22960255,22961234,22964414,22976209,22976692,22977340,22978268,22983943,22991060,23013924	22946163,22960415,22961322,22964531,22976305,22976808,22977421,22978448,22984045,22991139,23014151	0.774194
testis_male_adult_54_years	chrX	135893573	135893687	135893604	+	High_confidence	13	13	80	2.970561	5.794830	chrX	135893573	135893804	LTR|ERVL|LTR41	-	chrX	135893579	135913005	STRG.369177.1	+	135893579,135896242,135901558,135905251,135906023,135906410,135906925,135907312,135907700,135908088,135908476,135908863,135909638,135910029,135910414,135911191,135911578,135912320,135912797	135893781,135896329,135901691,135905392,135906164,135906551,135907066,135907453,135907841,135908229,135908617,135909004,135909779,135910170,135910555,135911332,135911953,135912414,135913005	0.625000
testis_male_adult_54_years	chr2	142748988	142748999	142748988	+	RAMPAGE_only	14	15	38	1.411016	4.947703	chr2	142748611	142749226	LTR|ERV1|LTR9D	-	chr2	142877497	143055832	KYNU|ENST00000264170.8	+	142877497,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142877736,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143055832	0.578947
testis_male_adult_54_years	chr4	175427871	175427885	175427884	-	High_confidence	7	7	14	0.519848	3.700440	chr4	175427746	175428951	LTR|ERV1|LTR12D	+	chr4	174979281	175428402	STRG.108923.1	-	174979281,174993815,175038568,175236580,175402970,175427725	174990145,174993902,175038723,175236698,175403107,175428402	0.642857
testis_male_adult_54_years	chr15	81414552	81414587	81414586	+	RAMPAGE_only	51	52	78	2.896297	5.253592	chr15	81413881	81415086	LTR|ERV1|LTR12D	+	chr15	81413497	81423940	STRG.298153.1	+	81413497,81418983	81415109,81423940	0.974359
testis_male_adult_54_years	chr16	55671670	55671711	55671710	+	High_confidence	4	4	21	0.779772	3.916127	chr16	55671454	55671819	DNA|hAT-Charlie|Charlie3	+	chr16	55671670	55703788	SLC6A2|NM_001172502.1	+	55671670,55685142,55691917,55694009,55695277,55696224,55697896,55698468,55699553,55700138,55701862,55702322	55672175,55685281,55692052,55694113,55695402,55696337,55698025,55698568,55699654,55700306,55701934,55703788	0.809524
testis_male_adult_54_years	chr12	124004563	124004564	124004563	+	RAMPAGE_only	4	4	7	0.259924	2.584963	chr12	124004578	124005112	DNA|hAT-Charlie|MER1A	+	chr12	123973122	124015422	ZNF664|ENST00000539644.5	+	123973122,123988042,124003422,124004877,124011380,124011545	123974020,123988138,124003540,124004935,124011441,124015422	0.571429
testis_male_adult_54_years	chr4	119504539	119504540	119504539	-	RAMPAGE_only	4	4	6	0.222792	2.584963	chr4	119503954	119504512	LINE|L1|L1PA17	-	chr4	119500822	119519099	PDE5A|ENST00000503412.1	-	119500822,119502580,119504535,119505854,119507603,119511046,119519044	119501253,119502655,119504599,119505932,119507704,119511134,119519099	0.500000
testis_male_adult_54_years	chr11	68180141	68180189	68180141	-	High_confidence	6	6	15	0.556980	3.521641	chr11	68180123	68180214	SINE|MIR|MIRc	+	chr11	68171118	68180165	KMT5B|ENST00000323599.10	-	68171118,68171231,68171542,68173803,68174087,68175017,68180131	68171151,68171251,68171709,68173913,68174210,68175183,68180165	0.800000
testis_male_adult_54_years	chr14	19466175	19466183	19466175	-	RAMPAGE_only	12	13	21	0.779772	3.239354	chr14	19465757	19466325	LTR|ERV1|MER4-int	-	chr14	19451662	19481896	STRG.277180.26	-	19451662,19470098,19481540	19459617,19480324,19481896	0.952381
testis_male_adult_54_years	chr5	177689303	177689304	177689303	+	RAMPAGE_only	484	488	555	20.608266	4.453903	chr5	177688053	177689723	LTR|ERV1|LTR12C	+	chr5	177688057	177730132	STRG.133642.1	+	177688057,177706705,177716005,177717552,177724337	177689740,177706885,177716602,177717684,177730132	0.969369
testis_male_adult_54_years	chr5	149887611	149887622	149887616	-	RAMPAGE_only	4	7	17	0.631244	3.750000	chr5	149887556	149888026	LTR|ERV1|LTR46	+	chr5	149857963	149905133	STRG.129895.1	-	149857963,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647	149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149905133	0.882353
testis_male_adult_54_years	chr5	109383422	109383498	109383462	-	High_confidence	8	8	63	2.339317	5.446971	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.968254
testis_male_adult_54_years	chr7	158863344	158863402	158863386	+	RAMPAGE_only	16	16	83	3.081957	5.739750	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.831325
testis_male_adult_54_years	chr15	42583041	42583108	42583107	+	RAMPAGE_only	29	30	119	4.418709	5.807086	chr15	42582899	42583140	SINE|MIR|MIRb	+	chr15	42576743	42724922	STRG.293271.3	+	42576743,42585520,42634855,42637906,42638025,42651015,42652519,42661157,42662793,42663280,42665252,42665785,42669157,42674439,42674826,42675871,42681421,42681752,42684115,42694527,42695139,42695742,42716676,42716926,42717730,42717976,42718434,42718751,42719472	42583415,42585637,42634972,42637939,42638812,42651085,42652592,42661225,42662891,42663917,42665330,42665848,42669337,42674491,42675746,42675975,42681612,42682575,42694342,42694725,42695323,42695880,42716764,42717048,42717795,42718179,42718514,42718910,42724922	0.932773
testis_male_adult_54_years	chr14	35121184	35121211	35121184	-	High_confidence	49	52	109	4.047389	5.111512	chr14	35121096	35121392	SINE|Alu|AluSx4	+	chr14	35095047	35121974	PPP2R3C|ENST00000554899.5	-	35095047,35096557,35096708,35099251,35108138,35109847,35110524,35121901	35095184,35096633,35096764,35099384,35108236,35109931,35110629,35121974	0.889908
testis_male_adult_54_years	chrX	30883738	30883739	30883738	-	RAMPAGE_only	11	12	15	0.556980	3.807355	chrX	30883714	30883798	DNA|TcMar-Tigger|Tigger16b	+	chrX	30842987	30889261	STRG.361188.1	-	30842987,30846550,30852777,30854115,30859486,30867114,30867464,30871698,30889113	30843049,30846644,30852938,30855562,30859678,30867218,30867549,30871801,30889261	0.933333
testis_male_adult_54_years	chr14	70783439	70783440	70783439	-	High_confidence	7	8	9	0.334188	2.500000	chr14	70783278	70783452	LTR|ERV1?|LTR103_Mam	-	chr14	70729665	70783440	MAP3K9|ENST00000553414.5	-	70729665,70732538,70733756,70734385,70738244,70739897,70742350,70748828,70749932,70761001,70783222	70730864,70733342,70733798,70734498,70738398,70740164,70742591,70749004,70750081,70761182,70783440	0.777778
testis_male_adult_54_years	chr6	9041624	9041625	9041624	+	High_confidence	241	241	250	9.283003	6.044855	chr6	9040590	9042044	LTR|ERV1|LTR12C	+	chr6	9041624	9096238	AL591485.1|ENST00000645715.1	+	9041624,9046419,9092216,9095344	9042162,9046491,9092308,9096238	0.792000
testis_male_adult_54_years	chr9	93014947	93014967	93014954	-	High_confidence	6	6	15	0.556980	3.807355	chr9	93014629	93014932	SINE|Alu|AluSx	-	chr9	93013667	93014952	STRG.206586.2	-	93013667,93014266	93013887,93014952	0.533333
testis_male_adult_54_years	chr5	97979416	97979455	97979421	+	RAMPAGE_only	8	8	30	1.113960	4.651084	chr5	97979415	97979787	LTR|ERV1|LTR78B	+	chr5	97504695	97988744	STRG.122557.1	+	97504695,97521228,97668550,97670593,97881429,97899637,97978479	97504792,97521290,97668662,97670684,97881567,97899795,97988744	0.966667
testis_male_adult_54_years	chr4	2867835	2867851	2867850	+	High_confidence	4	4	17	0.631244	3.750000	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.941176
testis_male_adult_54_years	chr2	228689652	228689696	228689670	+	High_confidence	10	11	33	1.225356	4.862576	chr2	228689434	228689685	SINE|MIR|MIRb	-	chr2	228689660	228723062	STRG.58969.1	+	228689660,228710551,228714557,228716643,228722792	228689866,228710642,228714645,228716727,228723062	0.787879
testis_male_adult_54_years	chr1	109311375	109311377	109311376	-	RAMPAGE_only	3	5	7	0.259924	2.521641	chr1	109311355	109311553	SINE|tRNA-RTE|MamSINE1	-	chr1	109309564	109393357	SORT1|NM_001205228.1	-	109309564,109314260,109314671,109316849,109317852,109322931,109324898,109326991,109327498,109336239,109340723,109342013,109345750,109347482,109350928,109354366,109355366,109367407,109369529,109393026	109314057,109314384,109314778,109316958,109317969,109323121,109325089,109327160,109327601,109336346,109340879,109342158,109345878,109347532,109351002,109354531,109355469,109367481,109369589,109393357	1.000000
testis_male_adult_54_years	chr9	38970402	38970433	38970432	-	High_confidence	4	4	10	0.371320	3.121928	chr9	38970128	38970416	SINE|Alu|AluSp	-	chr9	38968706	38970140	STRG.201316.1	-	38968706,38969833	38969098,38970140	0.900000
testis_male_adult_54_years	chr3	112287182	112287235	112287188	-	High_confidence	8	8	36	1.336752	4.900712	chr3	112286978	112287635	LTR|ERVL|LTR84b	-	chr3	112141215	112286879	SLC9C1|ENST00000471295.1	-	112141215,112151856,112154996,112167220,112168876,112169196,112179530,112180563,112182132,112199320,112200710,112202249,112217441,112221127,112231360,112239839,112266237,112274896,112277694,112278728,112280682,112286703	112141281,112151963,112155049,112167347,112169062,112169328,112179701,112180662,112182258,112199469,112200762,112202399,112217561,112221225,112231486,112240006,112266340,112275025,112277860,112278857,112280783,112286879	0.694444
testis_male_adult_54_years	chr1	27166971	27166997	27166980	-	High_confidence	7	7	29	1.076828	4.651084	chr1	27166187	27167277	LINE|L2|L2a	+	chr1	27098814	27166938	STRG.3431.1	-	27098814,27101202,27101724,27102015,27102384,27102672,27103222,27105884,27107647,27109526,27113790,27121090,27153982,27155353,27166770	27100644,27101275,27101826,27102130,27102558,27102743,27103312,27106087,27107865,27109777,27114286,27121253,27154361,27155404,27166938	0.586207
testis_male_adult_54_years	chr2	267005	267017	267005	+	High_confidence	41	41	87	3.230485	5.822254	chr2	266504	267206	DNA|TcMar-Tigger|MER44C	-	chr2	266055	277369	STRG.29216.5	+	266055,271865,272191,275139,276979,277226	267547,271939,272305,275201,277085,277369	0.816092
testis_male_adult_54_years	chr9	70176001	70176011	70176010	+	RAMPAGE_only	8	8	13	0.482716	3.392747	chr9	70175682	70176053	LTR|ERVL-MaLR|MLT1B	-	chr9	70169641	70179832	STRG.203282.3	+	70169641,70178730	70178651,70179832	1.000000
testis_male_adult_54_years	chr4	170979814	170979846	170979834	+	High_confidence	8	10	43	1.596676	4.869747	chr4	170979630	170979874	LINE|L1|L1PB1	-	chr4	170979833	170994818	STRG.108030.1	+	170979833,170979925,170993736	170979884,170980128,170994818	0.860465
testis_male_adult_54_years	chr15	51804226	51804250	51804249	+	RAMPAGE_only	4	4	12	0.445584	3.459432	chr15	51803608	51804449	LINE|L1|L1ME3G	+	chr15	51751666	51808881	TMOD2|ENST00000435126.6	+	51751666,51766372,51768261,51773711,51776931,51781043,51798196,51806376,51808419	51751712,51766567,51768418,51773834,51777018,51781174,51798340,51806521,51808881	0.583333
testis_male_adult_54_years	chr13	68281562	68281563	68281562	-	High_confidence	55	55	56	2.079393	4.999186	chr13	68281145	68281842	LTR|ERV1|LTR12_	-	chr13	68281173	68281689	STRG.270698.1	-	68281173	68281689	0.839286
testis_male_adult_54_years	chr16	9184092	9184119	9184118	+	High_confidence	18	19	33	1.225356	4.812500	chr16	9183367	9184727	LTR|ERV1|LTR12C	-	chr16	9183798	9264876	STRG.303165.1	+	9183798,9256226	9184733,9264876	0.606061
testis_male_adult_54_years	chr4	61646765	61646834	61646765	+	RAMPAGE_only	2	2	21	0.779772	3.820889	chr4	61641294	61647303	LINE|L1|L1PA3	-	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.857143
testis_male_adult_54_years	chr6	75442161	75442205	75442194	-	High_confidence	14	15	83	3.081957	5.857314	chr6	75440987	75442779	Retroposon|SVA|SVA_D	-	chr6	75312108	75442851	STRG.144470.3	-	75312108,75353538,75362743,75414696,75442105	75315202,75353717,75362917,75414978,75442851	0.903614
testis_male_adult_54_years	chr1	179727776	179727788	179727776	+	High_confidence	148	148	214	7.946250	6.690170	chr1	179727227	179727791	LINE|L2|L2a	-	chr1	179727792	179742697	STRG.20227.3	+	179727792,179728508,179742354	179727845,179730417,179742697	0.668224
testis_male_adult_54_years	chr22	41280760	41280776	41280775	-	High_confidence	3	4	9	0.334188	2.750000	chr22	41280754	41280881	SINE|MIR|MIRb	+	chr22	41264743	41281621	RANGAP1|ENST00000452543.5	-	41264743,41268096,41274599,41280932,41281456	41264843,41268156,41274727,41281082,41281621	0.777778
testis_male_adult_54_years	chr14	20803813	20803816	20803815	-	High_confidence	8	14	15	0.556980	3.521641	chr14	20803739	20804168	LTR|ERV1|MER39B	+	chr14	20801227	20803278	RNASE1|ENST00000397967.4	-	20801227,20802796	20802093,20803278	0.866667
testis_male_adult_54_years	chr15	77285030	77285062	77285030	-	RAMPAGE_only	5	6	18	0.668376	4.169925	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.500000
testis_male_adult_54_years	chr11	107441565	107441591	107441590	-	RAMPAGE_only	8	8	18	0.668376	3.350209	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	0.944444
testis_male_adult_54_years	chr14	100829513	100829594	100829513	+	High_confidence	20	20	90	3.341881	5.502569	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.977778
testis_male_adult_54_years	chr20	20076500	20076529	20076504	-	High_confidence	58	59	202	7.500666	5.556872	chr20	20076072	20076574	LTR|ERVL-MaLR|MLT1G1	+	chr20	20075815	20076494	STRG.342686.1	-	20075815	20076494	0.831683
testis_male_adult_54_years	chr19	46079937	46079964	46079937	+	RAMPAGE_only	3	3	10	0.371320	3.121928	chr19	46079790	46080252	LTR|ERV1|LTR78	+	chr19	46078758	46091910	STRG.337772.1	+	46078758	46091910	0.700000
testis_male_adult_54_years	chr11	124075990	124076115	124076017	+	High_confidence	25	30	131	4.864293	6.173839	chr11	124074506	124076546	LTR|ERV1|MER52D	-	chr11	124075784	124078284	STRG.244130.1	+	124075784	124078284	0.977099
testis_male_adult_54_years	chr8	70535688	70535715	70535694	-	High_confidence	109	118	289	10.731151	5.742094	chr8	70535303	70535921	LTR|ERV1|LTR27B	+	chr8	70525058	70535702	STRG.185888.1	-	70525058,70528060,70535213	70525352,70528299,70535702	0.937716
testis_male_adult_54_years	chr5	34244778	34244826	34244778	-	High_confidence	37	37	200	7.426402	6.263670	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.705000
testis_male_adult_54_years	chr6	116001573	116001583	116001573	-	RAMPAGE_only	7	7	13	0.482716	3.251629	chr6	116001390	116001850	LTR|ERV1|MER101	+	chr6	115931148	116060758	FRK|ENST00000606080.1	-	115931148,115943019,115944243,115956451,115967550,115968575,116003876,116059967	115942625,115943185,115944425,115956610,115967719,115968739,116003998,116060758	0.846154
testis_male_adult_54_years	chr8	30657022	30657030	30657022	-	High_confidence	13	16	39	1.448148	4.681881	chr8	30656840	30657035	SINE|MIR|MIRc	-	chr8	30607103	30657005	GTF2E2|ENST00000518599.5	-	30607103,30612298,30614607,30635031,30653432,30656868	30607150,30612481,30614715,30635123,30653602,30657005	0.897436
testis_male_adult_54_years	chr5	33297999	33298051	33297999	-	High_confidence	34	34	111	4.121653	6.347319	chr5	33297738	33298188	LTR|ERV1|MER48	-	chr5	33023054	33297910	AC010343.3|ENST00000510327.1	-	33023054,33263499,33297731	33023327,33263666,33297910	0.657658
testis_male_adult_54_years	chr11	78473000	78473046	78473028	+	High_confidence	4	4	19	0.705508	4.058814	chr11	78473019	78473178	SINE|Alu|AluJo	+	chr11	78473032	78480369	STRG.238169.1	+	78473032,78474829,78478595,78480286	78473296,78474877,78478714,78480369	0.631579
testis_male_adult_54_years	chr16	87139320	87139336	87139335	-	RAMPAGE_only	4	4	8	0.297056	2.807355	chr16	87139077	87139534	LINE|L2|L2a	+	chr16	87083395	87154831	STRG.311292.18	-	87083395,87138423,87139191,87140184,87154337	87083906,87138555,87139354,87141103,87154831	0.500000
testis_male_adult_54_years	chr15	62261588	62261600	62261588	+	RAMPAGE_only	3	4	10	0.371320	2.725481	chr15	62261580	62261706	LINE|L2|L2a	-	chr15	62222394	62271304	STRG.295655.1	+	62222394,62254960,62268139	62246950,62267854,62271304	0.900000
testis_male_adult_54_years	chr15	72278864	72278874	72278864	+	High_confidence	19	19	43	1.596676	4.642085	chr15	72278738	72279123	LTR|ERVL-MaLR|MLT1K	+	chr15	72278871	72283381	STRG.296943.1	+	72278871,72283094	72279031,72283381	0.953488
testis_male_adult_54_years	chr19	28008566	28008570	28008566	-	High_confidence	77	77	117	4.344445	4.106478	chr19	28008139	28008823	LTR|ERV1|LTR12_	-	chr19	28008241	28008581	STRG.333725.1	-	28008241	28008581	0.940171
testis_male_adult_54_years	chr7	43153035	43153062	43153035	-	High_confidence	225	247	421	15.632577	5.403201	chr7	43152930	43153026	LINE|L1|HAL1	-	chr7	43152242	43153055	STRG.163372.1	-	43152242	43153055	0.992874
testis_male_adult_54_years	chr17	5117634	5117638	5117634	+	RAMPAGE_only	5	5	9	0.334188	2.750000	chr17	5117583	5117779	LINE|L2|L2a	-	chr17	5116437	5174991	STRG.312747.7	+	5116437,5118199,5125820,5129935,5130366,5130601,5132395,5132909,5133442,5133886,5135233,5135807,5136639,5137120,5137650,5138120,5139254,5141424,5142002,5142396,5144689,5145404,5146022,5147082,5148555,5155421,5161527,5162883,5167931,5168766,5170478,5171586,5172804	5116740,5125272,5128922,5130089,5130439,5130684,5132435,5132990,5133550,5133996,5135282,5135928,5136734,5137186,5137750,5138273,5139674,5141499,5142141,5142502,5144863,5145579,5146174,5147194,5148767,5155606,5161614,5163004,5168123,5169055,5170915,5171679,5174991	0.888889
testis_male_adult_54_years	chr1	182453366	182453382	182453366	+	High_confidence	8	9	14	0.519848	3.700440	chr1	182453147	182453860	LINE|CR1|L3	+	chr1	182453381	182471375	RGSL1|ENST00000447374.5	+	182453381,182453957,182458318,182460003,182471281	182453554,182454040,182458393,182460133,182471375	0.571429
testis_male_adult_54_years	chr7	116287862	116287885	116287884	+	High_confidence	21	21	46	1.708073	5.202804	chr7	116287576	116287922	LINE|L2|L2a	-	chr7	116287863	116322823	CAV2|ENST00000460222.5	+	116287863,116288046,116289851,116316431,116319640,116322801	116287907,116288114,116290050,116316510,116319759,116322823	0.630435
testis_male_adult_54_years	chr4	107286602	107286632	107286631	+	RAMPAGE_only	20	21	96	3.564673	5.091071	chr4	107286486	107286642	SINE|MIR|MIR	-	chr4	107258699	107301870	AC104663.1|ENST00000508555.1	+	107258699,107301488	107258874,107301870	0.697917
testis_male_adult_54_years	chr16	22091832	22091833	22091832	-	High_confidence	4	4	6	0.222792	2.584963	chr16	22091765	22091846	SINE|MIR|MIRc	+	chr16	22086070	22091845	STRG.305144.1	-	22086070,22087097,22090022,22091809	22086194,22087251,22090248,22091845	1.000000
testis_male_adult_54_years	chr3	195356169	195356212	195356211	-	High_confidence	6	6	28	1.039696	4.078419	chr3	195355936	195357733	LINE|L1|L1M1	+	chr3	195333081	195356212	ACAP2|ENST00000423531.3	-	195333081,195336931,195342470,195345258,195356067	195333123,195336976,195342654,195345317,195356212	0.785714
testis_male_adult_54_years	chr7	100351909	100351988	100351950	+	High_confidence	6	9	42	1.559544	4.689704	chr7	100351420	100351962	LINE|L2|L2	-	chr7	100352175	100367733	PILRB|ENST00000452089.5	+	100352175,100352563,100352996,100353209,100356749,100358219,100358689,100359336,100367348	100352478,100352914,100353123,100353270,100356883,100358366,100359079,100359537,100367733	0.880952
testis_male_adult_54_years	chr5	105392966	105392970	105392966	-	High_confidence	207	208	417	15.484049	7.490644	chr5	105391971	105393225	LTR|ERV1|LTR2752	-	chr5	105391194	105392963	STRG.124128.2	-	105391194	105392963	0.508393
testis_male_adult_54_years	chr6	84159840	84159849	84159848	-	High_confidence	4	4	9	0.334188	3.000000	chr6	84159547	84159881	SINE|Alu|AluSx	-	chr6	84124954	84159013	STRG.145673.7	-	84124954,84126377,84146686,84149561,84152544,84157004	84125276,84126512,84146785,84149703,84155510,84159013	0.888889
testis_male_adult_54_years	chr9	33393832	33393866	33393832	-	High_confidence	6	6	33	1.225356	4.542748	chr9	33393691	33394003	LINE|L2|L2b	+	chr9	33385505	33394176	AQP7|ENST00000447660.3	-	33385505,33386076,33386403,33393796	33385866,33386195,33386541,33394176	0.636364
testis_male_adult_54_years	chr12	9391539	9391553	9391539	-	RAMPAGE_only	5	6	14	0.519848	3.392747	chr12	9391538	9391777	LINE|L1|L1ME3B	-	chr12	9371911	9381808	STRG.246790.1	-	9371911,9381351	9372032,9381808	0.785714
testis_male_adult_54_years	chr4	79492578	79492596	79492595	+	High_confidence	8	8	20	0.742640	3.892407	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.850000
testis_male_adult_54_years	chr3	20342467	20342493	20342467	+	High_confidence	13	15	50	1.856601	4.988758	chr3	20342255	20342545	LINE|L2|L2b	+	chr3	20342467	20350928	LOC101927829|NR_110814.1	+	20342467,20345659,20346024,20347996,20350714	20344036,20345782,20346066,20348089,20350928	1.000000
testis_male_adult_54_years	chr3	58884551	58884568	58884551	-	RAMPAGE_only	4	4	8	0.297056	3.000000	chr3	58884428	58884530	LINE|L2|L2c	-	chr3	58742009	59049989	C3orf67|NM_198463.2	-	58742009,58753768,58806394,58831685,58863557,58866565,58867816,58869327,58870172,58884544,58913707,58937647,59039556,59046228,59047164,59049934	58742572,58753863,58806456,58831889,58863892,58866688,58867936,58869490,58870309,58884709,58913864,58937762,59039629,59046322,59047254,59049989	0.750000
testis_male_adult_54_years	chr3	129026719	129026729	129026719	-	High_confidence	60	65	155	5.755462	6.479846	chr3	129026363	129026713	LINE|CR1|L3	-	chr3	129024867	129027023	STRG.77565.2	-	129024867,129026648	129026531,129027023	0.877419
testis_male_adult_54_years	chr2	38867184	38867245	38867221	-	High_confidence	21	26	190	7.055082	6.453423	chr2	38866898	38867322	DNA|TcMar-Tigger|Tigger3c	+	chr2	38856794	38867230	DHX57|ENST00000479345.2	-	38856794,38858660,38860998,38862144,38863360,38867108	38857144,38858836,38861837,38862333,38863519,38867230	0.994737
testis_male_adult_54_years	chr12	68344642	68344653	68344651	+	High_confidence	3	6	11	0.408452	2.721928	chr12	68344423	68344969	LINE|L2|L2a	-	chr12	68344663	68349959	AC022511.1|ENST00000544089.1	+	68344663,68349723	68344903,68349959	0.545455
testis_male_adult_54_years	chr2	177922835	177922867	177922846	-	High_confidence	6	6	20	0.742640	3.787144	chr2	177922789	177923057	LINE|L2|L2a	+	chr2	177898113	177922837	PDE11A|ENST00000427127.1	-	177898113,177899504,177905097,177921730,177922707	177898198,177899590,177905187,177921958,177922837	0.900000
testis_male_adult_54_years	chr21	32641904	32641912	32641904	-	High_confidence	5	5	10	0.371320	2.846439	chr21	32641733	32641912	SINE|MIR|MIR3	-	chr21	32631777	32641945	SYNJ1|ENST00000418301.3	-	32631777,32634860,32638907,32639670,32641895	32631801,32634881,32639125,32639779,32641945	0.500000
testis_male_adult_54_years	chrX	127662529	127662530	127662529	-	High_confidence	305	307	328	12.179300	4.798704	chrX	127662012	127663525	LTR|ERV1|LTR12C	-	chrX	127660630	127662530	AL591643.1|ENST00000561587.1	-	127660630	127662530	0.951220
testis_male_adult_54_years	chr13	41881827	41881886	41881827	-	High_confidence	4	4	26	0.965432	3.923856	chr13	41881380	41882843	Retroposon|SVA|SVA_D	-	chr13	41719336	41882707	STRG.267046.3	-	41719336,41721369,41727193,41729541,41732079,41761127,41777984,41783794,41787436,41811224,41816697,41819217,41830528,41833370,41865735,41865901,41868345,41869059,41881999	41719742,41721575,41727313,41729677,41732155,41761204,41778056,41783901,41787543,41811340,41816775,41819386,41830642,41833531,41865813,41866036,41868477,41869189,41882707	0.923077
testis_male_adult_54_years	chr3	194708406	194708412	194708406	+	High_confidence	2	3	6	0.222792	2.584963	chr3	194708003	194708522	LTR|ERVL-MaLR|MLT1F	-	chr3	194708420	194782168	LINC01968|ENST00000423318.1	+	194708420,194744573,194745534,194779461	194709147,194744689,194745631,194782168	0.500000
testis_male_adult_54_years	chr18	80147915	80147930	80147929	+	RAMPAGE_only	8	8	18	0.668376	3.794653	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80146618	80149273	STRG.330630.2	+	80146618	80149273	0.833333
testis_male_adult_54_years	chr8	86694085	86694086	86694085	-	RAMPAGE_only	4	4	6	0.222792	2.584963	chr8	86693462	86695342	Retroposon|SVA|SVA_D	-	chr8	86666926	86671075	STRG.188877.1	-	86666926,86668018,86670943	86667133,86668168,86671075	0.833333
testis_male_adult_54_years	chr19	2907107	2907143	2907107	+	High_confidence	109	110	231	8.577495	5.829244	chr19	2906922	2907108	LTR|ERVL|LTR52-int	-	chr19	2907107	2918346	ZNF57|ENST00000523428.5	+	2907107,2915521,2916077,2916923	2907159,2915648,2916249,2918346	0.995671
testis_male_adult_54_years	chr17	33580041	33580071	33580041	+	High_confidence	5	5	21	0.779772	3.681881	chr17	33579495	33580095	LTR|ERV1|LTR12D	-	chr17	33580075	33624122	AC011824.2|ENST00000579975.1	+	33580075,33581155,33623453,33624088	33580273,33581465,33623544,33624122	0.619048
testis_male_adult_54_years	chr3	197641515	197641516	197641515	-	RAMPAGE_only	11	11	12	0.445584	3.277613	chr3	197641384	197641551	LTR|ERVL|MLT2B4	+	chr3	197632214	197654409	STRG.87371.2	-	197632214,197643237	197642343,197654409	0.916667
testis_male_adult_54_years	chr10	45594312	45594346	45594345	-	High_confidence	3	3	13	0.482716	3.584963	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45461386	45594491	MARCH8|ENST00000453980.3	-	45461386,45464238,45489366,45533109,45553111,45594234	45461411,45464327,45489417,45533289,45553204,45594491	0.615385
testis_male_adult_54_years	chr7	26805162	26805183	26805162	-	RAMPAGE_only	37	40	59	2.190789	5.611457	chr7	26805081	26805202	SINE|Alu|FLAM_A	+	chr7	26667061	26857723	SKAP2|NM_001303468.1	-	26667061,26670090,26684735,26690284,26725427,26725922,26726881,26738794,26739886,26844029,26854136,26854784,26857450	26669656,26670192,26684848,26690362,26725565,26725986,26727006,26738878,26739964,26844137,26854162,26854890,26857723	0.932203
testis_male_adult_54_years	chr18	54988235	54988240	54988235	-	High_confidence	16	18	28	1.039696	4.208966	chr18	54988190	54988459	LINE|L1|L1ME2	-	chr18	54987226	54988221	STRG.327758.1	-	54987226	54988221	0.964286
testis_male_adult_54_years	chr17	59499998	59500063	59500032	+	High_confidence	7	7	65	2.413581	5.542748	chr17	59500000	59501165	Retroposon|SVA|SVA_D	+	chr17	59499969	59500458	STRG.320437.1	+	59499969	59500458	0.707692
testis_male_adult_54_years	chr2	82937913	82937914	82937913	-	High_confidence	288	288	325	12.067904	5.537046	chr2	82937498	82939010	LTR|ERV1|LTR12C	-	chr2	82936048	82937929	STRG.41221.1	-	82936048	82937929	0.981538
testis_male_adult_54_years	chrY	3776225	3776226	3776225	+	High_confidence	20	21	29	1.076828	4.423252	chrY	3775922	3776417	LTR|ERVL-MaLR|MLT1H	+	chrY	3776236	3838594	STRG.371674.2	+	3776236,3803828,3804384	3776345,3803952,3838594	0.862069
testis_male_adult_54_years	chr7	77306773	77306790	77306789	+	RAMPAGE_only	11	11	40	1.485280	4.884184	chr7	77305135	77307428	LINE|L1|L1MA5A	-	chr7	77305644	77308080	STRG.168451.1	+	77305644	77308080	0.775000
testis_male_adult_54_years	chr1	230745574	230745605	230745604	-	High_confidence	13	14	61	2.265053	5.319899	chr1	230745436	230745805	LTR|ERVL-MaLR|MLT1A0	-	chr1	230702819	230745601	STRG.26640.1	-	230702819,230704192,230705932,230709994,230745514	230703329,230704337,230706200,230710853,230745601	0.508197
testis_male_adult_54_years	chr8	9735481	9735482	9735481	+	RAMPAGE_only	6	6	6	0.222792	2.584963	chr8	9735518	9735829	SINE|Alu|AluY	+	chr8	9575006	9776929	TNKS|ENST00000518281.5	+	9575006,9580158,9615581,9679950,9680724,9704662,9706186,9706810,9708370,9709954,9710141,9720373,9726640,9730889,9733278,9734864,9735376,9748023,9751608,9752543,9761515,9763146,9764715,9765691,9766238,9770105,9776649	9575399,9580383,9615677,9679987,9680800,9704757,9706253,9706997,9708492,9710046,9710220,9720545,9726720,9731035,9733444,9735084,9735486,9748212,9751846,9752626,9761636,9763244,9764790,9765797,9766425,9770262,9776929	1.000000
testis_male_adult_54_years	chr22	39018671	39018692	39018685	+	RAMPAGE_only	5	5	21	0.779772	4.247928	chr22	39018697	39018999	SINE|Alu|AluJb	+	chr22	39014261	39034634	STRG.356582.8	+	39014261,39015594,39017765,39018268,39034603	39014379,39015751,39018045,39019767,39034634	0.857143
testis_male_adult_54_years	chr4	38744118	38744135	38744118	+	RAMPAGE_only	4	4	8	0.297056	2.750000	chr4	38743635	38744259	LINE|L1|HAL1	+	chr4	38746852	38748519	STRG.93288.1	+	38746852,38748299	38746876,38748519	0.625000
testis_male_adult_54_years	chr19	31023335	31023419	31023335	+	RAMPAGE_only	37	37	71	2.636373	5.329118	chr19	31023100	31023570	LTR|ERVL|MER70A	+	chr19	31030185	31030748	STRG.333991.1	+	31030185	31030748	0.957746
testis_male_adult_54_years	chr5	96934225	96934231	96934230	+	RAMPAGE_only	13	16	22	0.816904	4.021928	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.727273
testis_male_adult_54_years	chr4	183482238	183482239	183482238	-	High_confidence	155	158	161	5.978254	5.675813	chr4	183481823	183483228	LTR|ERV1|LTR12C	-	chr4	183480044	183482281	STRG.109938.1	-	183480044	183482281	0.937888
testis_male_adult_54_years	chr1	35190183	35190214	35190183	-	High_confidence	50	50	206	7.649194	6.541853	chr1	35189980	35190245	SINE|Alu|AluSx	+	chr1	35176377	35190574	SFPQ|ENST00000470472.5	-	35176377,35177318,35177988,35187000,35187202,35187972,35189002,35189185,35190497	35176474,35177399,35178036,35187122,35187251,35188090,35189087,35189382,35190574	0.975728
testis_male_adult_54_years	chr2	166611481	166611492	166611481	-	High_confidence	214	215	325	12.067904	5.912060	chr2	166611166	166611890	LTR|ERV1|LTR12C	-	chr2	166549445	166611530	STRG.50449.1	-	166549445,166569624,166570115,166573632,166611134	166551413,166569765,166570183,166573720,166611530	0.870769
testis_male_adult_54_years	chr8	91015858	91015859	91015858	+	RAMPAGE_only	7	7	8	0.297056	2.807355	chr8	91015556	91016146	LTR|ERV1|LTR10C	-	chr8	91013937	91017325	STRG.189091.1	+	91013937	91017325	0.500000
testis_male_adult_54_years	chr5	10316077	10316106	10316077	+	High_confidence	4	4	10	0.371320	3.121928	chr5	10315943	10316109	LTR|ERVL|MER74A	+	chr5	10316123	10322401	STRG.112687.1	+	10316123,10319079,10322107	10316392,10319267,10322401	1.000000
testis_male_adult_54_years	chr16	15577122	15577181	15577122	+	High_confidence	26	27	60	2.227921	4.675652	chr16	15576751	15577391	LTR|ERV1|LTR9D	-	chr16	15577133	15587357	C16orf45|ENST00000565913.1	+	15577133,15581216,15583155,15586716	15577228,15581331,15583238,15587357	0.883333
testis_male_adult_54_years	chr5	94979069	94979070	94979069	-	RAMPAGE_only	11	11	17	0.631244	3.875000	chr5	94978964	94979491	LTR|ERVL-MaLR|MLT1J1-int	+	chr5	94707495	95081482	MCTP1|ENST00000312216.12	-	94707495,94708511,94710817,94714776,94779109,94799012,94868332,94870416,94870871,94871314,94873138,94888878,94894648,94909250,94912805,94917895,94923961,94931952,94940083,94942347,94953218,95017366,95081425	94707567,94708609,94710927,94714886,94779163,94799132,94868452,94870491,94870973,94871417,94873241,94888972,94894835,94909381,94912976,94917973,94924021,94931991,94940195,94942427,94953361,95017484,95081482	0.529412
testis_male_adult_54_years	chr12	45532830	45532831	45532830	-	RAMPAGE_only	7	7	10	0.371320	2.503258	chr12	45532704	45533024	SINE|Alu|AluY	-	chr12	45481870	45610590	AC079950.1|ENST00000551229.2	-	45481870,45518317,45519053,45600663,45610538	45482071,45518411,45519153,45600784,45610590	0.900000
testis_male_adult_54_years	chr21	33586778	33586789	33586788	-	High_confidence	5	5	11	0.408452	2.521928	chr21	33586634	33586939	SINE|Alu|AluSx3	-	chr21	33579523	33586158	DONSON|ENST00000440810.1	-	33579523,33581301,33581950,33584589,33585977	33579562,33581500,33582055,33584768,33586158	0.545455
testis_male_adult_54_years	chr11	77571043	77571075	77571074	+	High_confidence	2	2	7	0.259924	2.584963	chr11	77570921	77571455	LTR|ERV1|LTR61	+	chr11	77571088	77575662	LOC646029|NR_130930.1	+	77571088,77571514,77574210	77571310,77571685,77575662	0.714286
testis_male_adult_54_years	chr13	45695464	45695467	45695466	-	RAMPAGE_only	5	9	9	0.334188	2.641604	chr13	45695447	45695841	LTR|ERV1|LTR45C	-	chr13	45680183	45701184	LINC01055|ENST00000435067.2	-	45680183,45682301,45685063,45701026	45681491,45682419,45685200,45701184	0.888889
testis_male_adult_54_years	chr15	52569721	52569722	52569721	-	High_confidence	33	33	48	1.782337	5.289760	chr15	52569688	52569809	LINE|L2|L2	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	0.583333
testis_male_adult_54_years	chr6	1489600	1489649	1489620	-	High_confidence	28	34	137	5.087086	6.205747	chr6	1489482	1489855	LTR|ERVL-MaLR|MLT1B	-	chr6	1453150	1489930	STRG.134309.2	-	1453150,1454159,1458823,1464138,1489413	1453565,1454232,1459101,1464313,1489930	0.810219
testis_male_adult_54_years	chr1	179678210	179678217	179678216	+	High_confidence	16	16	25	0.928300	4.349649	chr1	179675578	179678352	LINE|L1|L1PB1	-	chr1	179677643	179691263	STRG.20212.6	+	179677643,179690695	179678480,179691263	0.800000
testis_male_adult_54_years	chr11	125684538	125684554	125684547	+	High_confidence	5	5	16	0.594112	3.640224	chr11	125684498	125684834	LINE|L1|HAL1	+	chr11	125683814	125684786	STRG.244705.1	+	125683814	125684786	0.812500
testis_male_adult_54_years	chr13	20567947	20567995	20567994	+	High_confidence	9	9	20	0.742640	4.142664	chr13	20567913	20568126	DNA|hAT-Charlie|MER30	-	chr13	20567165	20671039	STRG.264680.3	+	20567165,20567669,20574379,20582956,20589810,20590966,20591617,20592334,20596149,20597014,20598650,20599450,20601704,20605034,20615792,20625749,20631015,20638331,20641289,20643454,20644842,20653875,20656364,20663497,20670972	20567256,20567997,20574475,20583019,20589867,20591020,20591681,20592404,20596240,20597119,20598753,20599565,20601933,20605105,20615879,20625849,20631102,20638518,20641398,20643605,20644958,20653928,20656430,20663604,20671039	0.950000
testis_male_adult_54_years	chr2	7869312	7869331	7869330	-	High_confidence	9	9	22	0.816904	4.106603	chr2	7869318	7869648	LTR|ERVL|MLT2F	+	chr2	7868066	7869307	STRG.30214.1	-	7868066,7869110	7868185,7869307	0.772727
testis_male_adult_54_years	chr6	36540276	36540277	36540276	-	RAMPAGE_only	19	20	25	0.928300	4.584963	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36480438	36541680	STRG.140685.3	-	36480438,36497779,36498362,36507499,36515337,36521733,36524340,36525590,36540071	36496805,36497875,36506644,36507602,36517840,36521817,36524463,36525642,36541680	0.840000
testis_male_adult_54_years	chr6	108407009	108407060	108407032	-	High_confidence	25	26	106	3.935993	5.967775	chr6	108406807	108407407	LINE|L1|L1MDa	-	chr6	108388433	108407040	STRG.148966.2	-	108388433,108406978	108391842,108407040	0.650943
testis_male_adult_54_years	chr13	110822106	110822107	110822106	+	High_confidence	490	490	494	18.343213	5.503120	chr13	110820975	110822522	LTR|ERV1|LTR12C	+	chr13	110822118	110827615	STRG.276551.2	+	110822118,110824862	110822547,110827615	0.973684
testis_male_adult_54_years	chr7	79739747	79739766	79739765	-	High_confidence	9	9	18	0.668376	3.852169	chr7	79739118	79740549	LTR|ERV1|LTR12C	+	chr7	79739076	79739781	STRG.165949.1	-	79739076	79739781	0.722222
testis_male_adult_54_years	chr14	58321413	58321414	58321413	+	RAMPAGE_only	4	4	6	0.222792	2.584963	chr14	58320906	58321656	LINE|L1|L1MC4	-	chr14	58299536	58373887	ARID4A|ENST00000431317.6	+	58299536,58301579,58304943,58306021,58318541,58318710,58323484,58328236,58329527,58330002,58344694,58346410,58347019,58347646,58351072,58353657,58359131,58360900,58364169,58365517,58366882,58371885	58299860,58301690,58305009,58306112,58318621,58318805,58323617,58328316,58329604,58330169,58344767,58346505,58347117,58347878,58351323,58353855,58359216,58361042,58365300,58365622,58367029,58373887	0.833333
testis_male_adult_54_years	chr9	6585053	6585072	6585053	-	High_confidence	3	3	11	0.408452	3.321928	chr9	6584977	6585170	DNA|hAT-Charlie|MER5B	-	chr9	6532652	6585075	GLDC|ENST00000638694.1	-	6532652,6534707,6536063,6540050,6550802,6553367,6554668,6556152,6558558,6565353,6585038	6533160,6534788,6536236,6540146,6550914,6553509,6554781,6556302,6558684,6565429,6585075	0.727273
testis_male_adult_54_years	chrX	136222393	136222458	136222393	-	RAMPAGE_only	4	5	22	0.816904	4.297079	chrX	136222161	136222377	SINE|MIR|MIR	-	chrX	136216813	136220813	MAP7D3|ENST00000471510.1	-	136216813,136219397,136219592,136220764	136217258,136219495,136219671,136220813	0.636364
testis_male_adult_54_years	chr18	5748754	5748819	5748806	+	High_confidence	88	98	190	7.055082	6.950190	chr18	5748596	5749144	LTR|ERVL-MaLR|MLT1F2	+	chr18	5748818	5795901	MIR3976HG|ENST00000566533.5	+	5748818,5762297,5769762,5793586,5794793	5748964,5762473,5769866,5793742,5795901	0.715789
testis_male_adult_54_years	chr3	88338429	88338465	88338429	+	High_confidence	53	57	320	11.882244	6.616290	chr3	88338349	88338470	DNA|TcMar-Tigger|Tigger16b	-	chr3	88338412	88467562	CSNKA2IP|ENST00000637986.1	+	88338412,88465087	88338643,88467562	0.759375
testis_male_adult_54_years	chr14	47343001	47343022	47343021	-	High_confidence	4	6	10	0.371320	2.846439	chr14	47342878	47343220	LTR|Gypsy|LTR104_Mam	+	chr14	46841784	47343118	MDGA2|ENST00000357362.7	-	46841784,46845765,46855023,46873432,46874044,46877488,46882043,46920011,46957373,47035010,47061248,47096853,47131713,47144077,47218020,47301410,47343097	46842019,46845871,46855154,46873591,46874200,46877509,46882221,46920160,46957643,47035304,47061578,47097123,47131846,47144274,47218195,47301550,47343118	0.600000
testis_male_adult_54_years	chr7	104895990	104896020	104896019	-	RAMPAGE_only	7	7	26	0.965432	4.363713	chr7	104895843	104896218	LTR|ERVL-MaLR|MLT1B	-	chr7	104894391	104912167	STRG.169580.1	-	104894391,104911915	104896064,104912167	0.846154
testis_male_adult_54_years	chr10	104152618	104152631	104152618	-	RAMPAGE_only	4	4	11	0.408452	3.121928	chr10	104152096	104152570	LINE|L2|L2b	-	chr10	104129888	104161122	CFAP43|ENST00000457071.5	-	104129888,104131330,104132115,104133619,104140841,104142280,104143425,104145475,104146262,104147890,104152606,104161036	104130305,104131484,104132196,104133784,104141001,104142393,104143639,104145564,104146349,104147998,104152726,104161122	0.818182
testis_male_adult_54_years	chr7	44984361	44984362	44984361	-	RAMPAGE_only	6	6	7	0.259924	2.584963	chr7	44984007	44984385	LTR|ERVL|LTR40b	-	chr7	44983136	44986560	SNHG15|ENST00000584327.5	-	44983136,44983821,44984356,44986020,44986524	44983322,44983957,44984426,44986097,44986560	0.857143
testis_male_adult_54_years	chr8	56489075	56489081	56489076	+	High_confidence	2	3	7	0.259924	2.584963	chr8	56488917	56489306	LTR|ERVL-MaLR|MSTB	+	chr8	56489097	56527136	AC012349.1|ENST00000522511.1	+	56489097,56496222,56524623,56526980	56489250,56496355,56524749,56527136	0.714286
testis_male_adult_54_years	chr10	30902140	30902153	30902140	-	RAMPAGE_only	175	180	267	9.914247	6.283994	chr10	30901724	30903353	LTR|ERV1|LTR12C	-	chr10	30827886	30904461	STRG.216250.8	-	30827886,30834120,30835566,30844852,30848530,30876997,30901613	30828865,30834212,30835640,30845573,30850367,30877065,30904461	0.970037
testis_male_adult_54_years	chr7	86920889	86920913	86920895	-	High_confidence	24	31	98	3.638937	6.006595	chr7	86920666	86921157	LTR|ERVL|LTR42	+	chr7	86913025	86920868	KIAA1324L|ENST00000474609.1	-	86913025,86914722,86918441,86919219,86920762	86913204,86914860,86918544,86919310,86920868	0.846939
testis_male_adult_54_years	chr4	106321401	106321432	106321426	+	RAMPAGE_only	2	2	12	0.445584	3.584963	chr4	106320774	106322302	Retroposon|SVA|SVA_A	+	chr4	106316506	106349225	AIMP1|NM_001142416.1	+	106316506,106324984,106327450,106328075,106331671,106336868,106347525	106316594,106325118,106327564,106328243,106331883,106337037,106349225	1.000000
testis_male_adult_54_years	chr7	134432417	134432451	134432450	-	High_confidence	4	4	17	0.631244	3.875000	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.588235
testis_male_adult_54_years	chr3	45030311	45030326	45030311	+	High_confidence	3	3	9	0.334188	3.000000	chr3	45030224	45030375	SINE|MIR|MIR	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	0.777778
testis_male_adult_54_years	chr2	122808854	122808896	122808864	-	High_confidence	16	16	52	1.930865	5.268758	chr2	122808033	122811260	LINE|L1|L1PBa1	+	chr2	122801365	122808899	STRG.45265.1	-	122801365,122803790,122808318	122801497,122803877,122808899	0.634615
testis_male_adult_54_years	chr15	63284538	63284574	63284573	-	High_confidence	3	3	12	0.445584	3.459432	chr15	63284513	63284716	DNA|TcMar-Tigger|Tigger3b	-	chr15	63283691	63284496	STRG.295740.1	-	63283691	63284496	0.666667
testis_male_adult_54_years	chr20	34369398	34369458	34369434	+	RAMPAGE_only	4	4	25	0.928300	4.403856	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.960000
testis_male_adult_54_years	chr8	98045641	98045676	98045655	+	High_confidence	9	10	41	1.522412	5.182838	chr8	98045692	98046014	SINE|Alu|AluJb	+	chr8	98045679	98046637	STRG.190592.1	+	98045679	98046637	0.951220
testis_male_adult_54_years	chr3	124286618	124286628	124286627	-	High_confidence	7	7	17	0.631244	3.702820	chr3	124286550	124286954	LINE|L1|L1MEg	-	chr3	124284933	124286620	STRG.76930.1	-	124284933,124286358	124285142,124286620	0.764706
testis_male_adult_54_years	chr2	217903766	217903801	217903797	-	High_confidence	12	12	35	1.299620	4.104303	chr2	217903613	217903790	LINE|CR1|L3b	-	chr2	217859228	217903813	TNS1|ENST00000310858.10	-	217859228,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217903602	217859701,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217903813	0.685714
testis_male_adult_54_years	chr19	17197809	17197857	17197856	+	High_confidence	8	12	32	1.188224	4.663910	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	0.906250
testis_male_adult_54_years	chr7	153413966	153413974	153413966	-	High_confidence	4	4	9	0.334188	3.169925	chr7	153413807	153414153	LTR|ERV1|HERV-Fc1_LTR1	-	chr7	153411233	153413963	LINC01287|ENST00000416982.1	-	153411233,153411581	153411475,153413963	0.777778
testis_male_adult_54_years	chr11	77357655	77357656	77357655	-	RAMPAGE_only	9	9	11	0.408452	3.459432	chr11	77357584	77357761	SINE|MIR|MIRc	+	chr11	77349247	77356298	PAK1|ENST00000530358.1	-	77349247,77353535,77355667	77349287,77353599,77356298	0.545455
testis_male_adult_54_years	chr9	72363509	72363576	72363575	-	High_confidence	5	7	27	1.002564	4.458591	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.814815
testis_male_adult_54_years	chr15	51294023	51294029	51294028	-	RAMPAGE_only	4	7	13	0.482716	3.584963	chr15	51293534	51294998	Retroposon|SVA|SVA_D	+	chr15	51268027	51303099	STRG.294605.2	-	51268027	51303099	0.923077
testis_male_adult_54_years	chr7	113593620	113593638	113593622	-	RAMPAGE_only	50	60	143	5.309878	5.190408	chr7	113593157	113594562	LTR|ERV1|LTR12C	+	chr7	113452321	113487714	STRG.171510.1	-	113452321,113485271	113452489,113487714	0.958042
testis_male_adult_54_years	chr8	65646355	65646376	65646355	+	RAMPAGE_only	6	6	17	0.631244	3.734522	chr8	65646129	65646373	SINE|MIR|MIRb	-	chr8	65644738	65708338	MTFR1|ENST00000424808.6	+	65644738,65669872,65682352,65693643,65704693,65707009,65707842	65644784,65670018,65682451,65693759,65704929,65707256,65708338	0.647059
testis_male_adult_54_years	chr7	45805095	45805117	45805095	+	RAMPAGE_only	4	6	12	0.445584	3.459432	chr7	45805067	45805254	SINE|Alu|AluJb	-	chr7	45769104	45815263	GTF2IP13|ENST00000609439.2	+	45769104,45773563,45774759,45778186,45779274,45781494,45782644,45788718,45791787,45795074,45797042,45797477,45798538,45804231,45805098,45807339,45807489	45769467,45773673,45774891,45778402,45779340,45781553,45782914,45788954,45791852,45795198,45797140,45797674,45798707,45804350,45805289,45807397,45815263	0.916667
testis_male_adult_54_years	chr20	20267808	20267837	20267836	-	High_confidence	10	11	23	0.854036	4.349649	chr20	20267631	20267948	LTR|ERV1|MER61A	-	chr20	20258406	20267809	AL121721.1|ENST00000460400.1	-	20258406,20259697,20267493	20258559,20259796,20267809	0.695652
testis_male_adult_54_years	chr4	56308928	56308971	56308928	+	High_confidence	90	90	230	8.540363	7.045967	chr4	56308920	56309133	LINE|L2|L2a	-	chr4	56308928	56330265	STRG.94766.2	+	56308928,56310665,56313196,56314039,56323376,56324103,56327643	56309109,56310734,56313379,56316689,56323567,56324266,56330265	0.673913
testis_male_adult_54_years	chr22	19667539	19667548	19667539	+	High_confidence	2	2	7	0.259924	2.521641	chr22	19667217	19668050	LTR|ERV1|LTR1A2	+	chr22	19667564	19668456	STRG.353489.1	+	19667564,19668254	19667812,19668456	0.714286
testis_male_adult_54_years	chr1	100646987	100647014	100647005	-	High_confidence	18	21	97	3.601805	5.848806	chr1	100646491	100651884	LINE|L1|L1PA11	+	chr1	100627048	100647004	LINC01349|NR_038914.1	-	100627048,100628824,100640488,100645169,100646902	100627302,100628942,100640772,100645235,100647004	0.670103
testis_male_adult_54_years	chr6	79558744	79558775	79558760	+	RAMPAGE_only	4	4	16	0.594112	4.000000	chr6	79558733	79559059	LINE|L1|L1MC4	+	chr6	79537221	79560816	STRG.145125.1	+	79537221,79538727,79541516	79537884,79538843,79560816	0.937500
testis_male_adult_54_years	chr12	84154317	84154327	84154326	-	High_confidence	4	4	11	0.408452	3.095795	chr12	84154265	84154403	DNA|TcMar-Tigger|Tigger3b	+	chr12	84147303	84154338	AC090679.2|ENST00000647344.1	-	84147303,84154250	84147753,84154338	1.000000
testis_male_adult_54_years	chr9	92536649	92536652	92536651	-	High_confidence	13	18	27	1.002564	4.213661	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.888889
testis_male_adult_54_years	chr1	242773815	242773816	242773815	-	High_confidence	110	111	127	4.715765	5.460955	chr1	242773406	242774757	LTR|ERV1|LTR12C	-	chr1	242773340	242773838	STRG.28181.1	-	242773340	242773838	0.881890
testis_male_adult_54_years	chr16	30354660	30354681	30354679	-	High_confidence	9	15	24	0.891168	4.368523	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.916667
testis_male_adult_54_years	chr4	151956134	151956146	151956134	+	High_confidence	2	2	9	0.334188	2.947703	chr4	151955788	151956326	LTR|ERVL-MaLR|MLT1F1	+	chr4	151956002	151967590	AC097375.3|ENST00000513759.1	+	151956002,151966995	151956254,151967590	0.888889
testis_male_adult_54_years	chr14	94592090	94592843	94592795	+	RAMPAGE_only	75	78	1488	55.252433	7.637070	chr14	94592681	94592796	SINE|MIR|MIR3	+	chr14	94581614	94593115	SERPINA5|ENST00000554276.1	+	94581614,94587345,94590040,94590748,94592056	94581710,94587981,94590311,94590896,94593115	0.995296
testis_male_adult_54_years	chr1	19093565	19093590	19093573	-	High_confidence	4	4	14	0.519848	3.546594	chr1	19093526	19093673	LINE|L2|L2	+	chr1	19092732	19093440	UBR4|ENST00000492606.1	-	19092732,19093312	19092918,19093440	0.785714
testis_male_adult_54_years	chrX	31863202	31863259	31863245	-	High_confidence	10	10	40	1.485280	5.021928	chrX	31863061	31863362	SINE|Alu|AluYh3	+	chrX	31862823	31863621	STRG.361713.1	-	31862823	31863621	0.650000
testis_male_adult_54_years	chr9	81976864	81976937	81976936	-	High_confidence	7	7	36	1.336752	4.516876	chr9	81976760	81977074	SINE|Alu|AluY	-	chr9	81887526	81976806	STRG.204892.3	-	81887526,81931108,81967535,81976607	81887905,81931394,81976401,81976806	0.972222
testis_male_adult_54_years	chr11	93421416	93421417	93421416	-	High_confidence	11	11	11	0.408452	2.663533	chr11	93420986	93427031	LINE|L1|L1HS	+	chr11	93365425	93421299	STRG.239877.1	-	93365425,93385907,93420984	93365492,93386041,93421299	0.818182
testis_male_adult_54_years	chr13	100944513	100944550	100944543	-	High_confidence	4	5	12	0.445584	3.584963	chr13	100944418	100944534	LINE|L2|L2	-	chr13	100940861	100944364	LINC00411|ENST00000436722.1	-	100940861,100944174	100941132,100944364	0.583333
testis_male_adult_54_years	chr5	124893245	124893248	124893247	+	High_confidence	78	113	117	4.344445	5.870990	chr5	124892257	124893560	LTR|ERV1|LTR12C	+	chr5	124893255	124922377	STRG.126667.3	+	124893255,124919946	124893563,124922377	0.666667
testis_male_adult_54_years	chr15	53540803	53540867	53540852	+	High_confidence	6	11	37	1.373884	4.993237	chr15	53540633	53546677	LINE|L1|L1PA2	+	chr15	53540869	53546470	STRG.294756.1	+	53540869	53546470	0.891892
testis_male_adult_54_years	chr11	14337385	14337410	14337409	-	High_confidence	7	10	26	0.965432	3.825252	chr11	14337092	14337772	DNA|TcMar-Tigger|MER44D	+	chr11	14281689	14337166	RRAS2|ENST00000531421.5	-	14281689,14294470,14294759,14295767,14337000	14281720,14294579,14294862,14295855,14337166	0.807692
testis_male_adult_54_years	chr1	146394	146449	146448	-	High_confidence	7	7	17	0.631244	3.280639	chr1	146228	146522	SINE|Alu|AluJr	+	chr1	142807	146831	AL627309.5|ENST00000490997.5	-	142807,146385,146641	143011,146509,146831	0.764706
testis_male_adult_54_years	chr16	89673254	89673273	89673254	+	RAMPAGE_only	2	3	8	0.297056	2.750000	chr16	89672500	89673437	LTR|ERV1|MER4-int	+	chr16	89678286	89690594	STRG.311708.24	+	89678286,89685668,89689251,89690552	89682496,89686797,89689324,89690594	1.000000
testis_male_adult_54_years	chr5	118923506	118923531	118923506	-	RAMPAGE_only	3	3	9	0.334188	3.169925	chr5	118923164	118923843	LTR|ERV1|MER50B	+	chr5	118836073	118988220	DTWD2|NM_001308081.1	-	118836073,118848089,118928536,118939195,118944558,118988129	118841087,118848218,118928729,118939290,118944649,118988220	0.888889
testis_male_adult_54_years	chr19	7497449	7497450	7497449	-	High_confidence	32	32	39	1.448148	4.859641	chr19	7497376	7497451	SINE|MIR|MIRb	-	chr19	7476875	7497449	PEX11G|ENST00000593942.5	-	7476875,7478313,7482032,7485837,7489347,7490981,7497402	7477436,7478376,7482211,7486026,7489512,7491122,7497449	0.666667
testis_male_adult_54_years	chr14	68882874	68882887	68882874	-	High_confidence	5	6	15	0.556980	3.521641	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.933333
testis_male_adult_54_years	chr10	72206759	72206769	72206759	-	RAMPAGE_only	4	4	15	0.556980	3.323231	chr10	72206594	72207032	LTR|ERVL|LTR32	+	chr10	72161612	72204505	ASCC1|ENST00000461369.6	-	72161612,72196810,72198448,72203426,72204421	72161674,72196989,72198665,72203524,72204505	0.866667
testis_male_adult_54_years	chr8	32026201	32026251	32026250	+	High_confidence	21	21	123	4.567237	6.123231	chr8	32026231	32027122	LINE|L1|HAL1b	-	chr8	32026218	32101699	STRG.182308.4	+	32026218,32029378,32098680	32026364,32029485,32101699	0.512195
testis_male_adult_54_years	chr14	19398552	19398553	19398552	-	RAMPAGE_only	6	6	8	0.297056	2.750000	chr14	19398301	19398867	LINE|L1|L1PA13	-	chr14	19362467	19434341	STRG.277180.13	-	19362467,19381176,19393649,19404616,19413353,19414561,19416287,19421623,19424164,19425605,19425807,19428541,19428874,19433768	19376011,19383186,19403109,19404735,19413520,19414606,19416358,19421694,19424302,19425712,19426988,19428715,19428989,19434341	1.000000
testis_male_adult_54_years	chr16	61244678	61244679	61244678	-	High_confidence	12	12	13	0.482716	3.584963	chr16	61243997	61244935	LTR|ERV1|LTR27E	-	chr16	61244295	61244673	STRG.307471.1	-	61244295	61244673	0.692308
testis_male_adult_54_years	chr1	231476556	231476575	231476574	+	RAMPAGE_only	30	30	73	2.710637	5.918499	chr1	231476439	231476636	DNA|hAT-Blackjack|MER63A	-	chr1	231528652	231702561	TSNAX-DISC1|NR_028399.1	+	231528652,231529254,231537212,231542480,231561127,231616643,231617952,231693825,231701954	231528826,231529359,231537327,231542611,231561255,231616906,231618059,231694805,231702561	0.534247
testis_male_adult_54_years	chr4	158409304	158409305	158409304	+	RAMPAGE_only	4	5	6	0.222792	2.584963	chr4	158409109	158409463	LTR|ERVL-MaLR|THE1A	+	chr4	158315310	158652212	RXFP1|ENST00000460056.6	+	158315310,158422269,158514844,158572697,158593400,158599325,158605067,158607971,158612129,158612290,158617130,158626819,158628637,158633404,158638007,158639259,158644908,158646790,158648498,158651756	158315470,158422368,158514938,158572835,158593499,158599431,158605139,158608043,158612201,158612362,158617205,158626891,158628709,158633476,158638079,158639331,158645138,158647201,158648717,158652212	0.666667
testis_male_adult_54_years	chr11	8654573	8654616	8654581	-	RAMPAGE_only	8	8	22	0.816904	3.846439	chr11	8654174	8654581	LINE|L2|L2c	+	chr11	8610131	8666353	STRG.230034.4	-	8610131,8618749,8619382,8620049,8620445,8621031,8621644,8622815,8624358,8624712,8638653,8640226,8643008,8645740,8646446,8647969,8648415,8649739,8651799	8618003,8618968,8619535,8620124,8620572,8621321,8621819,8622876,8624551,8625228,8638815,8641152,8643126,8645887,8646561,8648086,8648548,8649887,8666353	0.909091
testis_male_adult_54_years	chr13	100481198	100481229	100481198	-	High_confidence	11	11	33	1.225356	4.317121	chr13	100480888	100481276	DNA|TcMar-Tigger|MER44C	-	chr13	100479558	100481157	PCCA-AS1|ENST00000414553.1	-	100479558,100480260,100481119	100479763,100480363,100481157	0.545455
testis_male_adult_54_years	chr1	182004317	182004318	182004317	-	High_confidence	8	9	11	0.408452	3.121928	chr1	182003319	182005087	LINE|L1|L1PB1	+	chr1	182002925	182004017	STRG.20383.1	-	182002925,182003999	182003145,182004017	0.636364
testis_male_adult_54_years	chr15	89226340	89226341	89226340	+	RAMPAGE_only	66	67	84	3.119089	6.026188	chr15	89226141	89226532	LTR|ERVL-MaLR|MLT1B	+	chr15	89243948	89317261	FANCI|ENST00000300027.12	+	89243948,89247628,89258703,89260712,89261584,89261820,89263418,89263902,89264521,89268398,89273376,89274167,89276710,89278686,89281169,89281764,89283135,89285095,89290212,89291612,89292687,89292941,89293832,89299799,89300299,89301325,89303863,89305114,89305340,89305604,89306006,89307475,89307612,89312903,89314611,89315281,89316396	89244033,89247731,89258776,89260843,89261741,89261878,89263460,89264026,89264607,89268525,89273469,89274304,89276891,89278774,89281300,89281835,89283250,89285218,89290281,89291714,89292864,89293063,89293997,89299966,89300385,89301442,89303915,89305242,89305409,89305698,89306194,89307529,89307672,89312972,89314707,89315389,89317261	0.607143
testis_male_adult_54_years	chr17	50737390	50737469	50737390	+	RAMPAGE_only	6	6	41	1.522412	4.833873	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50740266	50744808	LUC7L3|ENST00000507503.1	+	50740266,50741101,50741656,50743705,50744651	50740345,50741246,50741731,50743810,50744808	0.707317
testis_male_adult_54_years	chr2	37236701	37236725	37236701	+	RAMPAGE_only	4	4	14	0.519848	3.546594	chr2	37236494	37236798	SINE|Alu|AluY	+	chr2	37231819	37256634	STRG.34117.1	+	37231819,37232105,37236095,37237756,37241577,37242634,37243862,37246051,37247455,37248134,37253085	37231879,37232266,37236176,37237867,37242424,37242693,37243973,37246195,37247629,37248426,37256634	0.500000
testis_male_adult_54_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	13	13	13	0.482716	3.546594	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
testis_male_adult_54_years	chr14	102088003	102088050	102088014	-	High_confidence	10	10	25	0.928300	3.886842	chr14	102087931	102088180	SINE|Alu|AluJb	-	chr14	102080737	102087191	HSP90AA1|ENST00000216281.12	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087191	0.840000
testis_male_adult_54_years	chr6	89638799	89638829	89638823	+	High_confidence	35	35	153	5.681198	4.921544	chr6	89638870	89638965	SINE|MIR|MIRb	+	chr6	89638802	89639505	STRG.146504.1	+	89638802	89639505	0.738562
testis_male_adult_54_years	chr15	48162830	48162831	48162830	-	RAMPAGE_only	7	7	7	0.259924	2.521641	chr15	48162546	48165001	DNA|TcMar-Tigger|Tigger1	+	chr15	48143060	48159670	MYEF2|ENST00000558395.1	-	48143060,48149031,48149162,48151472,48151873,48153791,48157992,48158174,48158768,48159612	48143071,48149083,48149371,48151571,48151942,48153893,48158056,48158224,48158922,48159670	0.571429
testis_male_adult_54_years	chr9	20658312	20658347	20658312	+	High_confidence	6	6	25	0.928300	3.857797	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.720000
testis_male_adult_54_years	chr3	8675924	8675925	8675924	+	RAMPAGE_only	9	9	10	0.371320	3.169925	chr3	8673355	8676083	LTR|ERV1|HERVE-int	+	chr3	8677333	8679913	STRG.62479.1	+	8677333,8678131,8679791	8677883,8678306,8679913	0.700000
testis_male_adult_54_years	chr17	7641859	7641860	7641859	+	High_confidence	124	125	134	4.975689	4.978484	chr17	7640713	7642277	LTR|ERV1|LTR12C	+	chr17	7641850	7642492	STRG.312869.1	+	7641850	7642492	0.888060
testis_male_adult_54_years	chr3	149222070	149222078	149222077	-	High_confidence	7	8	15	0.556980	3.664498	chr3	149222056	149222177	LINE|L2|L2b	+	chr3	149172498	149222055	CP|ENST00000264613.10	-	149172498,149176249,149177839,149178414,149179555,149182004,149183465,149185238,149186519,149188051,149198366,149199711,149202101,149206167,149207362,149209210,149210166,149212450,149221646	149173730,149176412,149177979,149178631,149179662,149182133,149183605,149185446,149186732,149188202,149198578,149199864,149202241,149206339,149207617,149209384,149210379,149212698,149222055	0.933333
testis_male_adult_54_years	chr6	21914877	21914930	21914877	-	High_confidence	6	7	14	0.519848	3.378783	chr6	21914746	21915224	LTR|ERV1|MER101	+	chr6	21914453	21914883	STRG.137987.1	-	21914453	21914883	0.714286
testis_male_adult_54_years	chr15	23962740	23962741	23962740	+	High_confidence	67	68	92	3.416145	4.999302	chr15	23962441	23962990	LTR|ERV1|LTR12F	+	chr15	23962722	23965970	STRG.291089.7	+	23962722	23965970	0.880435
testis_male_adult_54_years	chr8	111741951	111741975	111741951	+	High_confidence	7	7	21	0.779772	3.975418	chr8	111741752	111742149	LTR|ERV1|MER110A	-	chr8	111741974	111756822	LINC02237|ENST00000650619.1	+	111741974,111745441,111754396,111756305	111742083,111745607,111754545,111756822	0.666667
testis_male_adult_54_years	chr9	77489890	77489909	77489906	-	RAMPAGE_only	6	8	23	0.854036	3.463281	chr9	77489501	77490948	LTR|ERV1|LTR12C	-	chr9	77489174	77491250	STRG.204429.1	-	77489174	77491250	0.869565
testis_male_adult_54_years	chr16	81658454	81658497	81658496	+	RAMPAGE_only	3	3	15	0.556980	3.640224	chr16	81658403	81658757	LINE|L2|L2c	-	chr16	81445217	81662910	STRG.310621.6	+	81445217,81607566,81620875,81652202,81657774	81445541,81607692,81620926,81652364,81662910	1.000000
testis_male_adult_54_years	chr11	127127772	127127803	127127772	+	High_confidence	6	6	18	0.668376	3.905765	chr11	127127556	127127895	LTR|ERV1|MER61A	-	chr11	127127783	127172363	AP001993.1|ENST00000646532.1	+	127127783,127137188,127171518,127171869	127127918,127137311,127171682,127172363	0.666667
testis_male_adult_54_years	chr21	25418200	25418238	25418237	-	RAMPAGE_only	10	12	34	1.262488	4.616875	chr21	25417560	25419020	LINE|L1|L1MDa	+	chr21	25385819	25431701	LINC00158|NR_024027.2	-	25385819,25420707,25424553,25429765,25431177	25386338,25420800,25424649,25430009,25431701	0.882353
testis_male_adult_54_years	chr1	27142348	27142356	27142355	-	RAMPAGE_only	4	5	8	0.297056	2.807355	chr1	27142224	27142384	SINE|MIR|MIR3	+	chr1	27135444	27140370	STRG.3431.7	-	27135444,27138395	27135947,27140370	0.500000
testis_male_adult_54_years	chr5	162269004	162269035	162269034	+	High_confidence	39	49	117	4.344445	4.491400	chr5	162268763	162269327	LTR|ERV1|LTR12_	+	chr5	162269047	162357147	STRG.131279.1	+	162269047,162355344,162356877	162269465,162355472,162357147	0.982906
testis_male_adult_54_years	chr13	85205736	85205737	85205736	+	High_confidence	35	43	50	1.856601	4.851663	chr13	85204731	85206134	LTR|ERV1|LTR12C	+	chr13	85205749	85206122	STRG.273118.1	+	85205749	85206122	0.880000
testis_male_adult_54_years	chr19	37454928	37454958	37454928	-	High_confidence	4	5	16	0.594112	3.589898	chr19	37454663	37455006	LINE|L1|L1MCc	-	chr19	37425628	37455075	ZNF569|ENST00000589833.5	-	37425628,37426251,37444906,37454833	37425963,37426378,37444964,37455075	0.687500
testis_male_adult_54_years	chr14	64453850	64453851	64453850	+	RAMPAGE_only	6	6	6	0.222792	2.584963	chr14	64453898	64454014	SINE|MIR|MIR3	+	chr14	64457996	64460003	MTHFD1|ENST00000554353.1	+	64457996,64459758	64458307,64460003	1.000000
testis_male_adult_54_years	chr3	194069397	194069403	194069397	-	High_confidence	3	3	8	0.297056	2.521641	chr3	194069156	194069428	LINE|L2|L2	+	chr3	194048912	194069529	LOC285389|NR_136181.1	-	194048912,194053764,194057636,194069315	194049371,194055585,194057815,194069529	0.875000
testis_male_adult_54_years	chr11	31335536	31335546	31335536	-	RAMPAGE_only	3	3	8	0.297056	2.500000	chr11	31329394	31335540	LINE|L1|L1PA6	-	chr11	30878583	31328280	DCDC1|ENST00000597505.5	-	30878583,30881157,30892817,30894247,30899540,30900345,30903490,30904960,30906539,30908945,30911326,30915510,30916869,30920775,30922502,30925308,30931770,30952444,31064468,31065018,31077864,31091392,31094049,31102176,31103643,31106796,31110259,31127468,31137691,31241449,31265506,31290646,31305614,31306231,31307638,31328116	30878711,30881308,30892997,30894384,30899642,30900498,30903683,30905164,30906725,30909116,30911420,30915711,30917028,30920935,30922638,30925408,30931952,30952568,31064626,31065153,31077925,31091511,31094184,31102282,31103769,31106960,31110361,31127639,31137784,31241616,31265600,31290852,31305777,31306388,31307908,31328280	1.000000
testis_male_adult_54_years	chr8	57202872	57202930	57202929	+	RAMPAGE_only	11	11	45	1.670940	4.969414	chr8	57202512	57203371	LTR|ERV1|MER50-int	-	chr8	57193619	57220236	STRG.184749.4	+	57193619,57193884,57210733,57212877,57215108,57218269,57220110	57193689,57206354,57212583,57214932,57217976,57219623,57220236	0.977778
testis_male_adult_54_years	chr8	57217103	57217134	57217103	+	RAMPAGE_only	20	20	31	1.151092	4.696132	chr8	57216995	57217711	LTR|ERV1|MER50	-	chr8	57193619	57220236	STRG.184749.4	+	57193619,57193884,57210733,57212877,57215108,57218269,57220110	57193689,57206354,57212583,57214932,57217976,57219623,57220236	0.935484
testis_male_adult_54_years	chr7	150034690	150034755	150034728	+	High_confidence	3	5	23	0.854036	4.349649	chr7	150034133	150034733	LTR|ERV1|HERVE-int	-	chr7	150034265	150045092	STRG.177026.4	+	150034265,150035421,150037600,150037816,150039104,150044749	150035259,150036817,150037735,150038713,150042012,150045092	1.000000
testis_male_adult_54_years	chr22	22925100	22925129	22925100	+	High_confidence	6	6	22	0.816904	4.201841	chr22	22925005	22925146	SINE|MIR|MIR	-	chr22	22925119	22926402	STRG.354887.1	+	22925119,22925716	22925313,22926402	0.818182
testis_male_adult_54_years	chr9	88418920	88418939	88418938	+	RAMPAGE_only	4	4	10	0.371320	2.947703	chr9	88418784	88418941	SINE|MIR|MIR	+	chr9	88393475	88475203	STRG.205859.5	+	88393475,88426381,88448940,88462495,88468371,88475077	88418951,88426591,88448989,88462749,88468605,88475203	0.700000
testis_male_adult_54_years	chr2	21101535	21101645	21101635	+	RAMPAGE_only	8	8	67	2.487845	4.526993	chr2	21101472	21102081	LTR|ERV1|LTR12C	-	chr2	21123916	21143272	TDRD15|ENST00000405799.1	+	21123916,21127600,21134761,21137464	21124046,21127711,21134847,21143272	0.835821
testis_male_adult_54_years	chr6	4725419	4725427	4725419	+	High_confidence	4	5	11	0.408452	3.459432	chr6	4724469	4725869	LTR|ERV1|LTR12C	-	chr6	4725209	4892112	STRG.135147.6	+	4725209,4733158,4734761,4891712	4725880,4733248,4734844,4892112	0.818182
testis_male_adult_54_years	chr13	79429472	79429477	79429476	-	High_confidence	6	6	10	0.371320	3.321928	chr13	79429281	79429764	LINE|L1|L1ME2z	-	chr13	79422676	79429463	STRG.272211.1	-	79422676,79423729,79428979,79429394	79422909,79423805,79429023,79429463	1.000000
testis_male_adult_54_years	chr18	12653075	12653085	12653084	-	High_confidence	16	18	34	1.262488	4.801970	chr18	12653065	12653265	DNA|hAT-Charlie|MER20	+	chr18	12506495	12653085	SPIRE1|ENST00000449797.5	-	12506495,12512453,12535475,12546673,12635061,12653000	12506641,12512531,12535601,12546904,12635096,12653085	0.647059
testis_male_adult_54_years	chr14	51717261	51717297	51717261	+	High_confidence	33	33	138	5.124218	6.459491	chr14	51717168	51717565	LTR|ERVL-MaLR|MSTD	-	chr14	51717254	51728769	FRMD6|ENST00000553556.2	+	51717254,51720054,51721948,51725778,51727744	51717348,51720390,51722080,51725870,51728769	0.971014
testis_male_adult_54_years	chr11	86938472	86938501	86938472	-	High_confidence	29	37	126	4.678633	5.520215	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86915616	86938852	STRG.238502.2	-	86915616,86938399	86922098,86938852	0.944444
testis_male_adult_54_years	chr17	33533762	33533774	33533762	-	High_confidence	7	7	14	0.519848	3.807355	chr17	33533643	33533796	SINE|MIR|MIR3	-	chr17	33529786	33533760	AA06|NR_037584.2	-	33529786,33533449,33533604	33530198,33533513,33533760	0.500000
testis_male_adult_54_years	chr15	92710675	92710676	92710675	-	High_confidence	84	85	91	3.379013	5.304040	chr15	92710299	92711583	LTR|ERV1|LTR12C	-	chr15	92710006	92710680	STRG.299759.5	-	92710006	92710680	0.857143
testis_male_adult_54_years	chr8	20973948	20973973	20973948	+	High_confidence	62	63	224	8.317570	5.787091	chr8	20973910	20974063	DNA|hAT-Tip100|MER96	+	chr8	20973796	20975029	LINC02153|ENST00000517573.1	+	20973796,20974803	20974522,20975029	0.955357
testis_male_adult_54_years	chr1	184539906	184539922	184539906	+	RAMPAGE_only	11	11	32	1.188224	4.103728	chr1	184539688	184540056	LTR|ERVL-MaLR|MLT1I	+	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.843750
testis_male_adult_54_years	chr19	9838167	9838184	9838167	+	RAMPAGE_only	3	3	6	0.222792	2.584963	chr19	9838106	9838331	LINE|L2|L2a	+	chr19	9835442	9849681	PIN1|ENST00000380889.6	+	9835442,9836354,9838435,9848029,9849089,9849532	9836012,9836875,9838648,9848140,9849195,9849681	0.500000
testis_male_adult_54_years	chr3	196230894	196230895	196230894	+	High_confidence	5	5	8	0.297056	3.000000	chr3	196230779	196230955	LTR|ERVL-MaLR|MLT1C	-	chr3	196230774	196232286	STRG.87164.6	+	196230774	196232286	0.875000
testis_male_adult_54_years	chr8	80086405	80086426	80086411	-	RAMPAGE_only	5	6	13	0.482716	3.392747	chr8	80086101	80086416	SINE|Alu|AluSc	-	chr8	80034867	80080831	TPD52|NM_001025252.2	-	80034867,80042619,80051526,80053281,80064477,80080314	80038235,80042668,80051628,80053430,80064593,80080831	0.846154
testis_male_adult_54_years	chr10	122933438	122933464	122933458	-	RAMPAGE_only	8	8	38	1.411016	4.315623	chr10	122933198	122933474	SINE|Alu|AluSx1	+	chr10	122930902	122954311	C10orf88|ENST00000368891.9	-	122930902,122937704,122948648,122951953,122952828,122954014	122932661,122938159,122948855,122952026,122953028,122954311	0.736842
testis_male_adult_54_years	chr12	14879483	14879494	14879493	+	High_confidence	10	10	17	0.631244	3.969816	chr12	14879318	14879523	LTR|ERVL|LTR16	-	chr12	14879113	14880115	STRG.248543.1	+	14879113	14880115	0.823529
testis_male_adult_54_years	chr10	30954489	30954515	30954489	-	RAMPAGE_only	2	3	8	0.297056	2.807355	chr10	30954155	30955107	LTR|ERVL-MaLR|MLT1H1-int	+	chr10	30951823	30961211	STRG.216267.2	-	30951823	30961211	0.625000
testis_male_adult_54_years	chr7	142798604	142798605	142798604	-	High_confidence	4	4	7	0.259924	2.584963	chr7	142798582	142798760	SINE|MIR|MIRb	+	chr7	142796806	142797610	STRG.175711.1	-	142796806	142797610	0.571429
testis_male_adult_54_years	chr7	142705264	142705289	142705288	+	High_confidence	12	12	24	0.891168	4.220176	chr7	142705071	142708422	LTR|ERV1|MER41-int	+	chr7	142705283	142710570	STRG.175700.1	+	142705283,142706931,142708208,142709026,142710353	142705479,142707017,142708546,142709185,142710570	0.625000
testis_male_adult_54_years	chr9	115743898	115743919	115743898	-	High_confidence	4	4	8	0.297056	2.807355	chr9	115743858	115744555	LTR|ERV1|MER50B	-	chr9	115739221	115743864	AL691420.1|ENST00000642165.1	-	115739221,115741461,115742814,115743779	115739874,115741562,115743070,115743864	0.625000
testis_male_adult_54_years	chr9	98007674	98007675	98007674	+	RAMPAGE_only	5	5	8	0.297056	2.807355	chr9	98007012	98008959	DNA|hAT-Charlie|Charlie3	+	chr9	97983360	98015943	ANP32B|ENST00000339399.4	+	97983360,97994630,97998555,98004963,98011270,98012420,98015363	97983609,97994780,97998678,98005153,98011389,98012472,98015943	0.875000
testis_male_adult_54_years	chr15	98550564	98550599	98550564	+	High_confidence	89	102	240	8.911683	5.240391	chr15	98549570	98551003	LTR|ERV1|LTR12C	+	chr15	98550604	98573658	STRG.301132.1	+	98550604,98572529	98551193,98573658	0.945833
testis_male_adult_54_years	chr16	66408512	66408539	66408538	+	High_confidence	4	4	11	0.408452	3.459432	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.818182
testis_male_adult_54_years	chr4	111802704	111802731	111802730	-	High_confidence	5	5	16	0.594112	3.773557	chr4	111802558	111802920	LTR|ERVL-MaLR|THE1D	-	chr4	111802377	111802715	STRG.100446.1	-	111802377	111802715	0.500000
testis_male_adult_54_years	chr6	19157592	19157617	19157594	-	RAMPAGE_only	11	16	27	1.002564	4.430632	chr6	19156978	19157914	LTR|ERVL|MER21C	-	chr6	19068542	19180480	LOC101928519|NR_110860.1	-	19068542,19086160,19087927,19098291,19099590,19126436,19145610,19151625,19175832,19178399,19180151	19069123,19086371,19088071,19098408,19099741,19126643,19145686,19151785,19175922,19178465,19180480	0.629630
testis_male_adult_54_years	chr3	40306802	40306815	40306802	+	RAMPAGE_only	6	6	15	0.556980	3.235926	chr3	40306686	40306937	LINE|RTE-X|L4_A_Mam	+	chr3	40309681	40312424	EIF1B|NM_005875.2	+	40309681,40310892,40311469,40311969	40309972,40311056,40311571,40312424	0.800000
testis_male_adult_54_years	chr13	40481012	40481031	40481027	-	High_confidence	19	19	50	1.856601	5.272773	chr13	40480963	40481330	LINE|L2|L2c	-	chr13	40470086	40481025	LINC00598|ENST00000638163.1	-	40470086,40473993,40480235,40480908	40470162,40474095,40480468,40481025	0.580000
testis_male_adult_54_years	chr8	58272100	58272137	58272100	-	High_confidence	23	23	94	3.490409	6.294483	chr8	58272087	58272283	LTR|Gypsy|LTR81A	+	chr8	58255770	58272101	AC092819.1|ENST00000519981.5	-	58255770,58257093,58257786,58259048,58259747,58260524,58271280,58271869	58256093,58257168,58257845,58259276,58260024,58260753,58271547,58272101	0.563830
testis_male_adult_54_years	chr12	102063099	102063112	102063111	-	High_confidence	2	3	8	0.297056	2.807355	chr12	102062989	102063561	LTR|ERV1|MER51A	-	chr12	102019276	102062149	WASHC3|ENST00000539515.5	-	102019276,102025973,102039867,102044104,102046053,102050188,102061247,102062105	102019371,102026038,102039975,102044212,102046119,102050291,102061346,102062149	0.625000
testis_male_adult_54_years	chr6	161216740	161216793	161216740	-	High_confidence	17	18	52	1.930865	5.017559	chr6	161216582	161216931	LTR|ERVL-MaLR|THE1A	-	chr6	161165837	161216937	STRG.155725.4	-	161165837,161216658	161166417,161216937	0.615385
testis_male_adult_54_years	chr12	18714744	18714773	18714744	-	High_confidence	2	3	7	0.259924	2.521641	chr12	18714673	18714885	DNA|hAT-Charlie|MER20	+	chr12	18696149	18714747	PLCZ1|ENST00000542762.5	-	18696149,18699793,18701500,18701691,18705165,18712841,18714655	18696266,18699950,18701568,18701776,18705315,18712986,18714747	1.000000
testis_male_adult_54_years	chr2	100739944	100740037	100739957	+	High_confidence	30	30	166	6.163914	6.520139	chr2	100739787	100740315	LTR|ERVL-MaLR|MLT1F2	+	chr2	100739937	100747337	STRG.42374.2	+	100739937,100747214	100741211,100747337	0.969880
testis_male_adult_54_years	chr12	10030681	10030688	10030681	+	High_confidence	24	24	45	1.670940	4.673601	chr12	10030563	10030691	LTR|ERV1|MER52C	-	chr12	10030677	10052835	CLEC9A|ENST00000544751.1	+	10030677,10041465,10051990	10030972,10041620,10052835	0.711111
testis_male_adult_54_years	chr12	28302792	28302803	28302792	+	High_confidence	1	1	7	0.259924	2.584963	chr12	28302675	28303295	LINE|L2|L2	-	chr12	28302633	28450259	CCDC91|ENST00000539904.1	+	28302633,28304625,28305648,28306741,28307644,28362437,28391303,28450160	28302811,28304711,28305779,28306945,28307749,28362515,28391411,28450259	0.714286
testis_male_adult_54_years	chr10	52046747	52046756	52046747	+	High_confidence	5	5	14	0.519848	3.700440	chr10	52046731	52046819	LINE|L2|L2a	+	chr10	52046747	52185074	PRKG1|ENST00000646354.1	+	52046747,52054483,52062536,52125733,52128369,52133839,52161888,52184687	52046926,52054561,52062631,52125983,52128541,52133905,52161963,52185074	0.714286
testis_male_adult_54_years	chr10	85432774	85432790	85432774	-	High_confidence	9	9	15	0.556980	3.773557	chr10	85432633	85432832	LINE|L2|L2b	-	chr10	85431942	85432772	LOC101929646|NR_120669.1	-	85431942,85432402	85432232,85432772	0.733333
testis_male_adult_54_years	chr6	69718632	69718634	69718633	-	RAMPAGE_only	20	37	41	1.522412	4.953056	chr6	69718461	69718829	LTR|ERVL-MaLR|THE1C	-	chr6	69675973	69749408	LMBRD1|ENST00000650473.1	-	69675973,69676449,69697562,69699042,69700764,69701442,69701888,69713644,69718955,69737941,69741788,69743783,69743987,69749340	69676271,69676541,69697641,69699192,69700869,69701545,69701953,69713797,69719081,69738015,69741877,69743881,69744047,69749408	0.878049
testis_male_adult_54_years	chr12	107736588	107736614	107736613	+	High_confidence	24	25	80	2.970561	5.590312	chr12	107736110	107737101	LINE|L2|L2a	-	chr12	107736588	107759968	AC007622.2|ENST00000546714.1	+	107736588,107738021,107739126,107758274,107759771	107736947,107738489,107739664,107758392,107759968	0.937500
testis_male_adult_54_years	chr4	171299109	171299110	171299109	+	High_confidence	118	119	151	5.606934	5.049862	chr4	171298092	171299531	LTR|ERV1|LTR12C	+	chr4	171298354	171327198	STRG.108121.1	+	171298354,171299221,171326890	171298828,171299495,171327198	0.920530
testis_male_adult_54_years	chr2	215232256	215232284	215232283	-	RAMPAGE_only	3	3	9	0.334188	2.947703	chr2	215232231	215232531	SINE|Alu|AluSx1	+	chr2	215175737	215183145	STRG.57170.1	-	215175737,215182941	215179341,215183145	0.888889
testis_male_adult_54_years	chr17	16095361	16095362	16095361	-	RAMPAGE_only	4	4	7	0.259924	2.807355	chr17	16094545	16096321	Retroposon|SVA|SVA_D	+	chr17	16040444	16194611	STRG.314519.19	-	16040444,16046950,16048844,16057513,16057906,16058470,16061400,16062104,16064067,16064869,16065484,16067893,16070164,16071408,16072144,16073428,16075533,16079963,16080407,16080606,16086281,16091862,16098366,16101249,16108785,16117887,16119422,16121051,16126081,16137310,16138157,16139007,16143605,16146375,16149450,16151945,16153338,16158759,16164978,16171802,16186553,16194461	16040494,16047093,16048988,16057737,16058064,16058599,16061894,16062270,16064187,16065019,16065694,16068121,16070525,16071665,16072228,16073569,16075702,16080064,16080509,16080727,16086442,16092058,16098496,16101805,16108912,16118027,16119485,16121269,16126206,16137412,16138212,16139186,16143696,16146548,16149517,16151998,16153395,16158873,16165161,16171995,16186687,16194611	1.000000
testis_male_adult_54_years	chr20	9333276	9333386	9333340	+	RAMPAGE_only	11	11	40	1.485280	4.596483	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9307799	9480816	PLCB4|NM_000933.3	+	9307799,9337125,9338007,9338893,9362895,9365460,9371213,9372302,9373046,9380053,9384200,9387462,9389878,9390530,9393587,9395522,9401489,9407916,9408632,9409056,9411036,9419806,9421296,9423747,9435559,9437001,9443980,9444177,9453346,9457413,9459634,9468570,9472789,9473278,9476716,9478920	9307898,9337206,9338067,9339037,9362975,9365514,9371295,9372403,9373104,9380162,9384411,9387556,9389958,9390615,9393678,9395618,9401590,9408058,9408717,9409181,9411088,9419909,9421461,9423952,9435648,9437152,9444030,9444243,9453462,9457489,9459810,9468672,9472847,9473365,9476753,9480816	0.675000
testis_male_adult_54_years	chr2	28635507	28635508	28635507	-	High_confidence	9	9	9	0.334188	3.169925	chr2	28635324	28635473	SINE|MIR|MIR3	-	chr2	28634236	28635862	STRG.32717.1	-	28634236	28635862	1.000000
testis_male_adult_54_years	chr2	112809635	112809642	112809641	+	High_confidence	4	4	8	0.297056	2.807355	chr2	112809518	112809872	LTR|ERVL-MaLR|MSTA	+	chr2	112808980	112814826	STRG.44133.4	+	112808980	112814826	0.625000
testis_male_adult_54_years	chr9	369299	369300	369299	+	RAMPAGE_only	4	7	7	0.259924	2.807355	chr9	369285	369450	DNA|hAT-Tip100|MER91A	+	chr9	273083	465241	DOCK8|ENST00000495184.5	+	273083,286460,289509,304580,311953,317042,325670,328021,332397,334224,336581,339005,340158,368017,371427,372184,376209,376976,379770,382512,386330,390470,396784,399145,404917,406929,414781,418067,420400,420948,422047,426884,428361,429701,432165,433874,434782,439244,441285,441874,443426,446369,449783,452010,463516,464158	273100,286636,289581,304704,312166,317128,325737,328171,332478,334384,336718,339099,340321,370300,371566,372286,376305,377211,379935,382685,386426,390566,396934,399259,405073,407069,414951,418207,420583,421078,422135,426981,428496,429854,432324,433975,434975,439388,441417,442009,443516,446606,449927,452117,463687,465241	1.000000
testis_male_adult_54_years	chr3	132047143	132047154	132047153	-	RAMPAGE_only	5	5	9	0.334188	2.947703	chr3	132047043	132047527	LTR|ERVL-MaLR|MLT1H	+	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.777778
testis_male_adult_54_years	chr11	20790535	20790538	20790537	+	RAMPAGE_only	3	5	8	0.297056	2.807355	chr11	20789074	20790922	LTR|ERV1|MER52A	-	chr11	20770828	20918246	NELL1|ENST00000529595.1	+	20770828,20783679,20847582,20885443,20918181	20770900,20783830,20847753,20885540,20918246	0.625000
testis_male_adult_54_years	chr12	55479507	55479528	55479507	-	High_confidence	3	4	15	0.556980	3.378783	chr12	55478463	55480124	Retroposon|SVA|SVA_D	-	chr12	55434733	55479472	AC122685.1|ENST00000555146.5	-	55434733,55476548,55479388	55435131,55476601,55479472	0.866667
testis_male_adult_54_years	chr5	132651634	132651641	132651634	+	RAMPAGE_only	3	4	7	0.259924	2.584963	chr5	132651456	132651812	LTR|ERVL-MaLR|MLT1A1	+	chr5	132656262	132660550	IL13|ENST00000468334.5	+	132656262,132657065,132659417,132659723,132660174	132656630,132657244,132659471,132659828,132660550	0.714286
testis_male_adult_54_years	chr19	9331621	9331628	9331627	+	RAMPAGE_only	21	21	36	1.336752	5.014997	chr19	9331608	9331833	LINE|L1|L1M3c	-	chr19	9324711	9343610	STRG.332343.19	+	9324711,9337795,9338493,9339192,9341101	9333113,9337858,9338582,9339319,9343610	0.750000
testis_male_adult_54_years	chr12	120810825	120810828	120810825	-	RAMPAGE_only	5	5	14	0.519848	3.521641	chr12	120810699	120810790	SINE|tRNA|LFSINE_Vert	-	chr12	120768957	120903370	SPPL3|ENST00000543608.5	-	120768957,120782654,120783673,120784473,120791468,120810808,120903315	120769059,120782767,120783752,120784593,120791557,120810886,120903370	0.500000
testis_male_adult_54_years	chr5	151547264	151547282	151547264	-	High_confidence	6	7	14	0.519848	3.392747	chr5	151546964	151547476	DNA|hAT-Charlie|MER113	-	chr5	151504092	151547276	STRG.130373.2	-	151504092,151507153,151510020,151512164,151517619,151521275,151525767,151527233,151527995,151529177,151531586,151534408,151537792,151539707,151540566,151542284,151547152	151506097,151507611,151510174,151512606,151517765,151522086,151525965,151527377,151528133,151529392,151531970,151534642,151537946,151539830,151540763,151546337,151547276	0.857143
testis_male_adult_54_years	chr11	47186969	47186979	47186978	-	High_confidence	3	3	8	0.297056	2.807355	chr11	47186761	47186974	SINE|MIR|MIRc	-	chr11	47177521	47186459	PACSIN3|NM_016223.4	-	47177521,47178365,47178893,47179158,47179410,47180185,47180454,47182402,47182673,47183003,47186348	47178046,47178487,47179030,47179279,47179586,47180341,47180690,47182559,47182764,47183069,47186459	0.625000
testis_male_adult_54_years	chr17	63489928	63489967	63489951	+	RAMPAGE_only	7	7	39	1.448148	4.701746	chr17	63489921	63490023	SINE|MIR|MIR3	-	chr17	63487000	63497438	STRG.320963.4	+	63487000,63488647,63488940,63490953,63491208,63493435,63493921,63494371,63496393,63496797,63497136	63487073,63488791,63489132,63491051,63491381,63493659,63494066,63494470,63496516,63496985,63497438	0.948718
testis_male_adult_54_years	chr1	241134896	241134934	241134896	-	High_confidence	22	24	101	3.750333	6.254451	chr1	241134778	241135144	LTR|ERV1|MER48	+	chr1	240800628	241135222	STRG.28020.2	-	240800628,240801454,240802903,240806139,240811917,240813617,240814715,240816316,240827097,240868586,240868775,240870054,240930716,240936599,240983078,241098665,241134866	240800721,240801508,240802993,240806326,240812043,240813728,240814777,240816415,240827172,240868668,240868852,240870119,240930768,240936706,240983129,241098762,241135222	0.633663
testis_male_adult_54_years	chr15	96492199	96492237	96492209	+	High_confidence	12	12	45	1.670940	5.169548	chr15	96490966	96492402	LTR|ERV1|LTR12C	-	chr15	96491739	96645200	STRG.300578.1	+	96491739,96498411,96635676,96641463,96644366	96492440,96498479,96635765,96641543,96645200	0.577778
testis_male_adult_54_years	chr19	208959	208960	208959	-	RAMPAGE_only	11	11	13	0.482716	3.251629	chr19	208823	209255	DNA|hAT-Charlie|MER1A	-	chr19	208187	212219	LINC01002|ENST00000633151.1	-	208187,211761,212017	208391,211885,212219	0.538462
testis_male_adult_54_years	chr16	58880299	58880333	58880319	-	High_confidence	3	3	10	0.371320	2.947703	chr16	58880114	58880623	LTR|ERVL-MaLR|MLT1J	-	chr16	58847807	58880213	AC092378.2|ENST00000569328.1	-	58847807,58879984,58880167	58848153,58880037,58880213	0.700000
testis_male_adult_54_years	chr10	119927782	119927783	119927782	+	RAMPAGE_only	10	10	10	0.371320	3.121928	chr10	119927750	119928005	LINE|L1|L1ME4a	-	chr10	119929644	119933770	STRG.227043.7	+	119929644,119932132,119933004,119933685	119930431,119932318,119933167,119933770	0.700000
testis_male_adult_54_years	chr21	35691288	35691312	35691288	-	High_confidence	4	4	17	0.631244	3.852169	chr21	35691113	35691413	SINE|Alu|AluSz6	+	chr21	35564191	35691519	STRG.351362.10	-	35564191,35654819,35691049	35580929,35654875,35691519	0.588235
testis_male_adult_54_years	chr12	110203856	110203893	110203856	+	High_confidence	1	1	8	0.297056	2.807355	chr12	110203870	110203951	LINE|L1|HAL1	+	chr12	110203334	110218560	IFT81|ENST00000550748.1	+	110203334,110205594,110209170,110218043	110205514,110205680,110209216,110218560	0.875000
testis_male_adult_54_years	chr3	47887671	47887687	47887671	-	RAMPAGE_only	5	5	9	0.334188	3.169925	chr3	47887022	47888693	LTR|ERV1|LTR12C	+	chr3	47850689	47909267	MAP4|ENST00000429422.5	-	47850689,47853162,47855247,47857430,47870812,47871226,47871916,47875684,47877416,47909037	47852938,47853352,47855360,47857512,47871105,47871286,47872100,47875900,47877523,47909267	0.888889
testis_male_adult_54_years	chr1	145834743	145834777	145834761	+	RAMPAGE_only	54	61	176	6.535234	5.610872	chr1	145834649	145834810	DNA|TcMar-Tigger|Tigger3c	-	chr1	145836536	145840407	POLR3C|ENST00000489436.1	+	145836536,145836814,145837535,145838055,145839889	145836574,145836866,145837596,145838206,145840407	0.840909
testis_male_adult_54_years	chr11	80708576	80708606	80708576	+	High_confidence	5	6	13	0.482716	3.700440	chr11	80708551	80708616	SINE|MIR|MIRb	+	chr11	80708545	80710844	STRG.237507.1	+	80708545,80708938,80710270	80708597,80709336,80710844	0.692308
testis_male_adult_54_years	chr11	94975022	94975048	94975033	-	RAMPAGE_only	5	5	19	0.705508	4.169925	chr11	94974577	94975336	LINE|L2|L2a	+	chr11	94962621	94973612	CWC15|NM_016403.3	-	94962621,94966294,94969988,94970976,94971374,94972054,94973497	94963514,94966413,94970096,94971065,94971487,94972193,94973612	0.684211
testis_male_adult_54_years	chr11	93499303	93499344	93499303	-	High_confidence	13	13	42	1.559544	3.836466	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	0.952381
testis_male_adult_54_years	chr5	146050065	146050090	146050065	+	High_confidence	492	494	1095	40.659552	7.111223	chr5	146050103	146050226	LINE|CR1|Plat_L3	+	chr5	146050063	146062781	SH3RF2|ENST00000503848.5	+	146050063,146055980,146062425	146050127,146056231,146062781	0.553425
testis_male_adult_54_years	chr17	6636000	6636001	6636000	-	High_confidence	8	9	10	0.371320	3.321928	chr17	6635869	6636030	LINE|L2|L2c	+	chr17	6628618	6636428	KIAA0753|ENST00000573033.1	-	6628618,6635010,6635897	6628741,6635171,6636428	0.600000
testis_male_adult_54_years	chr13	109732160	109732192	109732160	-	High_confidence	132	132	220	8.169042	6.505205	chr13	109731772	109733218	LTR|ERV1|LTR12C	-	chr13	109559830	109732183	STRG.276164.1	-	109559830,109730942	109560490,109732183	0.990909
testis_male_adult_54_years	chr4	126255662	126255663	126255662	-	High_confidence	96	97	106	3.935993	5.040490	chr4	126255106	126256048	LTR|ERV1|LTR12D	-	chr4	126226537	126255677	STRG.102337.1	-	126226537,126228624,126238150,126255018	126226955,126228747,126238228,126255677	0.943396
testis_male_adult_54_years	chr5	111517596	111517607	111517596	+	High_confidence	3	3	7	0.259924	2.584963	chr5	111517216	111518090	LTR|ERVL|MER21A	+	chr5	111517576	111519658	STRG.124694.1	+	111517576	111519658	0.571429
testis_male_adult_54_years	chr12	79045228	79045272	79045269	+	High_confidence	5	5	16	0.594112	3.640224	chr12	79039621	79045645	LINE|L1|L1PA2	-	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.812500
testis_male_adult_54_years	chr7	100035677	100035719	100035716	+	RAMPAGE_only	3	3	21	0.779772	3.463281	chr7	100035147	100035840	LINE|RTE-BovB|MamRTE1	+	chr7	100023407	100041688	ZKSCAN1|ENST00000620510.1	+	100023407,100023551,100024153,100029860,100030248,100033304	100023461,100023932,100024307,100029952,100030375,100041688	1.000000
testis_male_adult_54_years	chr5	9903968	9903986	9903985	+	High_confidence	7	7	12	0.445584	3.418296	chr5	9903817	9904123	LINE|L1|L1PBa	-	chr5	9903993	9904715	STRG.112647.1	+	9903993	9904715	0.916667
testis_male_adult_54_years	chr5	115295991	115296031	115296015	-	High_confidence	3	3	15	0.556980	3.521641	chr5	115296013	115296236	SINE|MIR|MIRb	-	chr5	115267354	115296065	CCDC112|ENST00000512261.5	-	115267354,115268881,115269702,115271212,115275215,115275993,115276964,115279646,115280351,115284786,115295909	115267918,115269000,115269798,115271626,115275606,115276069,115277054,115279768,115280480,115284908,115296065	0.866667
testis_male_adult_54_years	chr4	22475453	22475477	22475476	-	RAMPAGE_only	3	4	11	0.408452	2.921928	chr4	22475450	22475756	SINE|Alu|AluY	+	chr4	22438257	22473818	ADGRA3|ENST00000514129.5	-	22438257,22442649,22445040,22447439,22454865,22461736,22473771	22438420,22442863,22445133,22447511,22454937,22461808,22473818	0.636364
testis_male_adult_54_years	chr11	4116254	4116284	4116263	+	High_confidence	39	40	111	4.121653	6.182502	chr11	4115961	4116307	LTR|ERV1|HERV-Fc1_LTR1	-	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	0.927928
testis_male_adult_54_years	chr13	58858928	58858965	58858964	+	High_confidence	4	4	10	0.371320	3.321928	chr13	58858151	58859412	LTR|ERV1|LTR12C	-	chr13	58858666	58955661	STRG.269654.1	+	58858666,58955376	58859430,58955661	0.900000
testis_male_adult_54_years	chr19	11346988	11347038	11346988	+	High_confidence	2	2	9	0.334188	2.947703	chr19	11346902	11347120	SINE|MIR|MIR	-	chr19	11346571	11350989	CCDC159|ENST00000590636.1	+	11346571,11348965,11349653,11349937,11350117,11350807	11346627,11349083,11349687,11350026,11350199,11350989	0.555556
testis_male_adult_54_years	chr9	81977093	81977104	81977093	-	High_confidence	70	70	124	4.604369	6.089991	chr9	81976760	81977074	SINE|Alu|AluY	-	chr9	81930225	81977089	AL158154.2|ENST00000585776.5	-	81930225,81946389,81967535,81973940,81976607	81931394,81946486,81967688,81974247,81977089	0.709677
testis_male_adult_54_years	chr2	136575836	136575870	136575836	-	RAMPAGE_only	2	3	9	0.334188	2.947703	chr2	136575628	136576028	LTR|ERVL-MaLR|MSTC	-	chr2	136567200	136567655	STRG.46249.1	-	136567200	136567655	0.555556
testis_male_adult_54_years	chr9	132945504	132945576	132945511	+	High_confidence	20	32	82	3.044825	5.709184	chr9	132945394	132945527	SINE|MIR|MIRb	+	chr9	132945706	132951553	STRG.211215.2	+	132945706,132951208	132947246,132951553	0.658537
testis_male_adult_54_years	chr7	100349584	100349590	100349584	+	RAMPAGE_only	5	5	9	0.334188	3.000000	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100338196	100351900	STRG.169954.43	+	100338196,100338772,100345864,100349716,100351251	100338264,100338889,100345968,100349887,100351900	0.555556
testis_male_adult_54_years	chr14	75632624	75632645	75632624	+	High_confidence	7	7	22	0.816904	4.368523	chr14	75632226	75632769	LTR|ERVL?|LTR87	-	chr14	75632626	75639462	FLVCR2|ENST00000556409.1	+	75632626,75633628,75634909,75639351	75632952,75633696,75635013,75639462	0.500000
testis_male_adult_54_years	chr13	45377041	45377042	45377041	+	RAMPAGE_only	21	21	24	0.891168	4.142915	chr13	45376606	45377218	LTR|ERV1|HERVE-int	-	chr13	45378529	45390879	TPT1-AS1|ENST00000520585.5	+	45378529,45379194,45379898,45383090,45383759,45389734,45390757	45378671,45379335,45380001,45383235,45383838,45389820,45390879	0.791667
testis_male_adult_54_years	chr18	54883111	54883153	54883148	+	RAMPAGE_only	21	21	80	2.970561	5.307735	chr18	54882317	54883426	LINE|L2|L2c	-	chr18	54828476	54895516	RAB27B|NM_004163.4	+	54828476,54877566,54879368,54884332,54887994,54889223	54828700,54877738,54879454,54884436,54888118,54895516	0.862500
testis_male_adult_54_years	chr8	1869759	1869771	1869770	+	RAMPAGE_only	5	6	9	0.334188	3.000000	chr8	1869480	1869816	LINE|L1|L1MEd	+	chr8	1859914	1871131	ARHGEF10|ENST00000522969.1	+	1859914,1864372,1866525,1869193	1860184,1864436,1866602,1871131	0.777778
testis_male_adult_54_years	chr12	56677396	56677397	56677396	-	RAMPAGE_only	9	9	13	0.482716	3.584963	chr12	56677353	56677930	DNA|hAT-Charlie|MER119	-	chr12	56663340	56687997	PTGES3|NR_104219.1	-	56663340,56664775,56665631,56670274,56671748,56672739,56672951,56687249	56664498,56664800,56666266,56670364,56671847,56672809,56673065,56687997	0.769231
testis_male_adult_54_years	chr8	93156992	93156993	93156992	+	RAMPAGE_only	4	4	6	0.222792	2.584963	chr8	93156927	93157219	LTR|ERVL-MaLR|MLT1J	-	chr8	93160085	93160306	STRG.189549.1	+	93160085	93160306	0.500000
testis_male_adult_54_years	chr6	89656045	89656046	89656045	-	RAMPAGE_only	11	11	17	0.631244	3.969816	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642498	89819723	MDN1|ENST00000369393.7	-	89642498,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89706058,89707360,89708495,89710680,89712035,89712574,89713147,89714542,89715652,89716649,89718365,89718766,89719135,89722954,89723511,89725198,89727832,89728930,89730725,89732556,89738325,89740233,89743149,89743575,89745272,89745491,89747328,89749222,89749542,89750353,89751430,89753511,89754082,89756276,89758254,89758815,89761644,89762318,89771560,89772572,89774620,89776599,89780211,89781398,89785011,89787853,89789779,89790158,89793761,89794099,89794576,89803327,89819505	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89706192,89707476,89708628,89710794,89712256,89712786,89713296,89714751,89715769,89716809,89718627,89719030,89719225,89723143,89723619,89725396,89727955,89729139,89730923,89732775,89738455,89740378,89743280,89743714,89745411,89745626,89747470,89749369,89749751,89750532,89751582,89753622,89754230,89756390,89758351,89758960,89761748,89762530,89771621,89772721,89774733,89776695,89780293,89781592,89785126,89787957,89789911,89790401,89793954,89794207,89794801,89803554,89819723	0.941176
testis_male_adult_54_years	chr13	39336756	39336846	39336817	-	High_confidence	6	7	36	1.336752	3.678164	chr13	39336637	39336952	LINE|L2|L2c	+	chr13	39284685	39337137	STRG.266667.1	-	39284685,39336270	39285024,39337137	0.833333
testis_male_adult_54_years	chr2	67566516	67566549	67566516	+	High_confidence	26	26	107	3.973125	6.004061	chr2	67566342	67566864	LTR|ERVL-MaLR|MLT1F2	-	chr2	67566425	67571111	STRG.39309.1	+	67566425,67568007,67570001,67570735	67566972,67568156,67570100,67571111	0.971963
testis_male_adult_54_years	chr12	31651986	31652055	31651986	-	High_confidence	9	9	36	1.336752	5.003258	chr12	31651758	31652374	LTR|ERV1|LTR9	+	chr12	31651196	31652047	STRG.251152.2	-	31651196	31652047	0.833333
testis_male_adult_54_years	chr8	136793864	136793902	136793893	+	High_confidence	11	14	54	2.005129	5.171373	chr8	136793070	136794354	LTR|ERV1|LTR12C	-	chr8	136793872	136961852	STRG.194978.3	+	136793872,136797273,136896984,136961739	136794380,136797370,136897078,136961852	0.925926
testis_male_adult_54_years	chr16	9465693	9465694	9465693	-	High_confidence	25	25	33	1.225356	4.500000	chr16	9465328	9465797	LINE|L1|L1MEc	-	chr16	9460255	9466414	STRG.303312.1	-	9460255,9465427	9460573,9466414	0.727273
testis_male_adult_54_years	chr1	52919467	52919556	52919490	-	RAMPAGE_only	44	44	191	7.092214	6.583776	chr1	52919201	52919585	DNA|TcMar-Tigger|Tigger3c	+	chr1	52911563	52921515	ECHDC2|ENST00000480312.6	-	52911563,52911722,52912753,52913894,52921397	52911653,52912021,52912849,52914095,52921515	0.602094
testis_male_adult_54_years	chr6	26122979	26122998	26122997	-	High_confidence	12	12	26	0.965432	4.323856	chr6	26122928	26123343	LTR|ERV1|MER101	-	chr6	26114872	26123910	HIST1H2BC|ENST00000314332.5	-	26114872,26123514	26115135,26123910	0.653846
testis_male_adult_54_years	chr2	21649509	21649539	21649509	-	High_confidence	106	118	308	11.436659	6.055561	chr2	21649404	21649584	SINE|MIR|MIR3	+	chr2	21630076	21649502	STRG.32166.1	-	21630076,21636042,21636268,21647537,21649338	21630943,21636144,21638538,21647752,21649502	0.892857
testis_male_adult_54_years	chr2	191922579	191922580	191922579	+	High_confidence	272	274	315	11.696583	5.425668	chr2	191921476	191922999	LTR|ERV1|LTR12C	+	chr2	191922545	192036829	AC098617.1|ENST00000428980.6	+	191922545,192030581,192031331,192034693,192036684	191923044,192030680,192031603,192034885,192036829	0.977778
testis_male_adult_54_years	chr3	33864013	33864119	33864094	+	High_confidence	3	3	19	0.705508	3.836592	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33863895	33866468	PDCD6IP|ENST00000473593.1	+	33863895,33865242,33866350	33864129,33865430,33866468	0.631579
testis_male_adult_54_years	chr15	47260610	47260662	47260652	+	RAMPAGE_only	4	4	16	0.594112	3.323231	chr15	47258837	47261119	LINE|L1|L1MDa	-	chr15	47274182	47275164	AC084882.1|ENST00000561254.1	+	47274182,47274784	47274357,47275164	0.500000
testis_male_adult_54_years	chr9	98011055	98011058	98011055	+	RAMPAGE_only	2	2	7	0.259924	2.807355	chr9	98010844	98011068	LINE|L1|L1MC5	-	chr9	97983360	98015943	ANP32B|ENST00000339399.4	+	97983360,97994630,97998555,98004963,98011270,98012420,98015363	97983609,97994780,97998678,98005153,98011389,98012472,98015943	0.857143
testis_male_adult_54_years	chr14	70223775	70223806	70223797	+	High_confidence	82	83	289	10.731151	7.344213	chr14	70223543	70223937	LTR|ERV1|MER61B	-	chr14	70223775	70230181	STRG.285150.4	+	70223775,70224006,70227571	70223848,70224197,70230181	0.660900
testis_male_adult_54_years	chr22	21660071	21660114	21660113	+	RAMPAGE_only	13	13	38	1.411016	4.648510	chr22	21660001	21660195	LINE|L1|L1MC5a	-	chr22	21657810	21661021	AP000553.5|ENST00000641967.1	+	21657810,21658265,21660836	21657972,21658389,21661021	0.736842
testis_male_adult_54_years	chr1	173495447	173495454	173495447	+	High_confidence	6	10	19	0.705508	3.836592	chr1	173495175	173496290	LTR|ERV1|PABL_A-int	+	chr1	173495379	173499678	STRG.19553.5	+	173495379,173499321	173495497,173499678	0.684211
testis_male_adult_54_years	chr20	26209832	26209848	26209833	-	High_confidence	4	6	15	0.556980	3.664498	chr20	26209716	26209878	DNA|hAT-Tip100|FordPrefect	-	chr20	26187637	26209839	MIR663AHG|ENST00000596058.5	-	26187637,26191792,26192132,26199448,26200457,26209742	26187837,26191900,26192232,26199523,26200542,26209839	0.600000
testis_male_adult_54_years	chr3	17860975	17861017	17861006	+	High_confidence	7	7	22	0.816904	4.011365	chr3	17858274	17861391	LINE|L1|L1HS	-	chr3	17860790	18041541	STRG.64191.1	+	17860790,18013654,18016617,18041448	17861402,18013774,18016711,18041541	0.545455
testis_male_adult_54_years	chr2	76506866	76506883	76506882	+	RAMPAGE_only	8	8	14	0.519848	3.546594	chr2	76506561	76507081	LTR|ERVL|MLT2F	+	chr2	76570035	76589790	STRG.40702.1	+	76570035,76587614,76589626	76570110,76587696,76589790	0.571429
testis_male_adult_54_years	chr4	34335350	34335351	34335350	-	High_confidence	167	168	174	6.460970	5.343947	chr4	34334935	34336205	LTR|ERV1|LTR12C	-	chr4	34331756	34335346	STRG.92794.1	-	34331756,34334928	34332044,34335346	0.896552
testis_male_adult_54_years	chr1	100363140	100363166	100363162	+	High_confidence	9	10	29	1.076828	4.235926	chr1	100362798	100363434	LTR|ERV1|LTR9	-	chr1	100363160	100484639	CDC14A|ENST00000646563.1	+	100363160,100377545,100390731,100424221,100439931,100442933,100462650,100467955,100484291	100363225,100377621,100390824,100424301,100439998,100442996,100462881,100468094,100484639	0.655172
testis_male_adult_54_years	chr3	9978293	9978304	9978293	-	High_confidence	4	4	8	0.297056	2.521641	chr3	9978028	9978350	SINE|Alu|AluJo	+	chr3	9969728	9978297	EMC3|ENST00000497557.1	-	9969728,9970581,9973627,9974383,9976956,9977388,9978209	9969801,9970661,9973709,9974488,9977050,9977446,9978297	0.750000
testis_male_adult_54_years	chr8	21298225	21298239	21298225	+	High_confidence	54	54	206	7.649194	6.196728	chr8	21298161	21298736	LINE|L1|L1MEh	+	chr8	21298238	21309449	LOC101929172|NR_104677.1	+	21298238,21307769,21308109	21298407,21307893,21309449	0.902913
testis_male_adult_54_years	chr5	180080820	180080821	180080820	-	High_confidence	95	95	109	4.047389	5.295754	chr5	180080391	180081081	LTR|ERV1|LTR12_	-	chr5	180078356	180081691	AC122713.2|ENST00000624942.1	-	180078356	180081691	0.954128
testis_male_adult_54_years	chr3	79328881	79328926	79328905	+	High_confidence	13	13	50	1.856601	4.741468	chr3	79328634	79328941	LINE|L1|L1PB2	-	chr3	79328905	79433505	STRG.71131.1	+	79328905,79372602,79411950,79428607,79432116,79433409	79329043,79372746,79412034,79428735,79432236,79433505	0.680000
testis_male_adult_54_years	chr16	31118537	31118553	31118552	+	High_confidence	8	9	15	0.556980	3.906891	chr16	31118415	31118797	LINE|L2|L2c	+	chr16	31117696	31131359	STRG.306693.4	+	31117696,31120185,31120338,31127188,31128049,31130016,31130266,31130455,31130745,31131194	31117892,31120260,31127088,31127353,31128139,31130157,31130360,31130606,31130900,31131359	0.933333
testis_male_adult_54_years	chr12	7502501	7502523	7502504	-	High_confidence	5	5	27	1.002564	4.004344	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	1.000000
testis_male_adult_54_years	chr20	35856324	35856357	35856356	+	High_confidence	33	33	184	6.832290	6.295869	chr20	35856328	35856514	DNA|hAT-Charlie|MER5A	-	chr20	35856355	35863400	PHF20|ENST00000480940.1	+	35856355,35858301,35863012	35856530,35858381,35863400	0.853261
testis_male_adult_54_years	chr22	29553772	29553805	29553796	+	High_confidence	16	16	68	2.524977	5.076126	chr22	29553837	29553941	LINE|L2|L2a	+	chr22	29553662	29554816	STRG.355095.1	+	29553662	29554816	0.955882
testis_male_adult_54_years	chr5	140700439	140700457	140700445	+	High_confidence	306	488	1409	52.319004	5.620335	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.983676
testis_male_adult_54_years	chr20	31441260	31441261	31441260	+	High_confidence	12	12	18	0.668376	3.683542	chr20	31441151	31441518	LINE|L2|L2b	-	chr20	31440518	31450257	DEFB123|NM_153324.3	+	31440518,31450028	31440756,31450257	0.666667
testis_male_adult_54_years	chr20	17505417	17505461	17505433	-	RAMPAGE_only	3	4	15	0.556980	3.807355	chr20	17505256	17505430	DNA|hAT-Charlie|MER5A	-	chr20	17493904	17531369	BFSP1|NM_001195.4	-	17493904,17496937,17498819,17508888,17511975,17514720,17524847,17530952	17495029,17497023,17499040,17508996,17512068,17514816,17524908,17531369	0.800000
testis_male_adult_54_years	chr2	15220006	15220073	15220072	-	RAMPAGE_only	7	7	40	1.485280	4.733870	chr2	15219321	15220292	Retroposon|SVA|SVA_E	-	chr2	15166913	15238686	NBAS|ENST00000417461.5	-	15166913,15178987,15186741,15190263,15232421,15234544,15238467	15167323,15179116,15186880,15190403,15232511,15234747,15238686	0.575000
testis_male_adult_54_years	chr6	4224876	4224899	4224890	+	RAMPAGE_only	5	8	26	0.965432	4.334963	chr6	4224382	4224961	LTR|ERV1|LTR76	+	chr6	4209860	4277887	STRG.134947.1	+	4209860,4274458	4238052,4277887	0.884615
testis_male_adult_54_years	chr17	58540945	58540946	58540945	+	RAMPAGE_only	6	7	9	0.334188	2.725481	chr17	58540824	58541073	SINE|MIR|MIRb	-	chr17	58543573	58557357	STRG.320083.1	+	58543573,58556808	58544671,58557357	0.555556
testis_male_adult_54_years	chr13	77734739	77734748	77734747	+	RAMPAGE_only	3	3	9	0.334188	3.000000	chr13	77734739	77735046	SINE|Alu|AluSx	+	chr13	77741159	77764242	SLAIN1|ENST00000351546.7	+	77741159,77744282,77746513,77753202,77760827,77763144	77741440,77744516,77746855,77753358,77761110,77764242	0.666667
testis_male_adult_54_years	chr20	37504081	37504082	37504081	-	High_confidence	5	5	8	0.297056	2.807355	chr20	37503129	37504179	LINE|L2|L2b	+	chr20	37499892	37503975	BLCAP|ENST00000613961.1	-	37499892	37503975	0.875000
testis_male_adult_54_years	chr16	86553817	86553824	86553817	-	High_confidence	5	6	11	0.408452	3.121928	chr16	86553261	86554406	LTR|ERV1|LTR12C	+	chr16	86552037	86553721	MTHFSD|ENST00000561848.1	-	86552037,86553259	86552146,86553721	0.727273
testis_male_adult_54_years	chr19	58315014	58315015	58315014	-	RAMPAGE_only	8	8	8	0.297056	3.000000	chr19	58314839	58315267	LTR|ERVK|LTR3	+	chr19	58310448	58326933	AC010642.2|ENST00000634676.1	-	58310448,58312969,58314805,58325274,58326822	58312288,58313113,58315036,58325361,58326933	0.875000
testis_male_adult_54_years	chr21	29077437	29077517	29077486	+	High_confidence	23	24	70	2.599241	4.984121	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.671429
testis_male_adult_54_years	chr2	129329671	129329672	129329671	+	High_confidence	23	25	32	1.188224	4.671781	chr2	129329362	129329871	LTR|ERV1|LTR12F	+	chr2	129329684	129408210	STRG.46348.1	+	129329684,129354424,129407939	129329871,129354596,129408210	0.500000
testis_male_adult_54_years	chr5	133239987	133239988	133239987	+	High_confidence	97	98	100	3.713201	5.517508	chr5	133238808	133240300	LTR|ERV1|LTR12C	+	chr5	133239895	133240494	STRG.127702.1	+	133239895	133240494	0.880000
testis_male_adult_54_years	chr10	97102762	97102779	97102762	+	High_confidence	146	172	302	11.213867	6.335590	chr10	97102761	97102870	SINE|MIR|MIR3	+	chr10	97102755	97103747	SLIT1-AS1|NR_038330.1	+	97102755,97103319,97103585	97103110,97103491,97103747	0.980132
testis_male_adult_54_years	chr4	58565306	58565316	58565315	+	High_confidence	8	8	17	0.631244	3.625000	chr4	58564943	58565505	LTR|ERVL|MLT2B3	+	chr4	58565513	58566235	STRG.94927.1	+	58565513	58566235	0.588235
testis_male_adult_54_years	chr3	185299209	185299214	185299211	+	RAMPAGE_only	2	5	9	0.334188	3.000000	chr3	185299045	185299424	LINE|L1|L1MCc	+	chr3	185282976	185482456	MAP3K13|ENST00000424227.5	+	185282976,185285524,185428496,185437446,185443444,185447788,185449899,185451286,185463549,185465746,185466825,185472974,185477325,185480231,185482354	185283027,185285643,185429056,185437630,185443636,185447947,185450058,185451395,185463659,185465863,185466963,185473761,185477396,185480529,185482456	0.555556
testis_male_adult_54_years	chr1	95352647	95352672	95352671	-	High_confidence	13	13	29	1.076828	4.181786	chr1	95352645	95352945	LINE|L2|L2a	+	chr1	95351252	95352648	LINC01650|ENST00000650223.1	-	95351252,95352031	95351788,95352648	1.000000
testis_male_adult_54_years	chr19	35161580	35161606	35161589	+	High_confidence	2	2	8	0.297056	2.807355	chr19	35161248	35161749	LTR|ERVL-MaLR|MLT1K	-	chr19	35160762	35169880	FXYD5|ENST00000586925.1	+	35160762,35166250,35169565	35160801,35166325,35169880	0.500000
testis_male_adult_54_years	chr8	61825211	61825255	61825211	-	High_confidence	19	19	106	3.935993	5.835023	chr8	61825148	61825291	LTR|ERVL-MaLR|MLT1E1	+	chr8	61821480	61825252	AC025524.1|ENST00000518489.1	-	61821480,61825009	61821843,61825252	0.707547
testis_male_adult_54_years	chr13	64076008	64076044	64076017	-	High_confidence	3	3	16	0.594112	3.640224	chr13	64075759	64076092	LTR|ERV1|MER52A	-	chr13	63986370	64076011	LINC00355|ENST00000456627.1	-	63986370,63990095,64002384,64003347,64034346,64075241	63987039,63990200,64002409,64003465,64034537,64076011	0.875000
testis_male_adult_54_years	chr10	29142762	29142766	29142762	+	High_confidence	9	11	16	0.594112	3.906891	chr10	29142530	29143374	LTR|ERV1|LTR1A2	+	chr10	29142631	29143156	STRG.216154.1	+	29142631	29143156	0.750000
testis_male_adult_54_years	chr2	113978867	113978884	113978867	+	High_confidence	6	7	17	0.631244	3.690117	chr2	113978777	113978910	SINE|Alu|AluSx	+	chr2	113978770	113979371	STRG.44273.2	+	113978770	113979371	0.647059
testis_male_adult_54_years	chr11	41714533	41714562	41714561	+	High_confidence	83	104	190	7.055082	7.096833	chr11	41714444	41714603	LTR|ERVL-MaLR|MLT1G1	+	chr11	41714533	41857733	LINC01499|ENST00000648000.1	+	41714533,41734671,41736496,41786642,41787283,41808246,41808966,41821292,41826153,41850116,41850462,41851589,41855761,41856327,41857631	41714603,41734776,41736634,41786719,41787436,41808326,41809083,41821366,41826243,41850310,41850619,41851642,41856057,41856554,41857733	0.515789
testis_male_adult_54_years	chr17	17956008	17956129	17956041	-	RAMPAGE_only	48	48	462	17.154989	5.407748	chr17	17955692	17957026	LTR|ERV1|LTR12C	-	chr17	17893677	17957571	STRG.314816.13	-	17893677,17898595,17907446,17955414	17893810,17898674,17907531,17957571	0.997835
testis_male_adult_54_years	chr6	46668042	46668043	46668042	+	RAMPAGE_only	15	16	21	0.779772	3.684184	chr6	46668062	46668338	SINE|Alu|AluSz6	+	chr6	46664874	46677003	SLC25A27|ENST00000604616.1	+	46664874,46668708,46670134,46671125,46676646	46664886,46668793,46670227,46671228,46677003	0.904762
testis_male_adult_54_years	chr7	54759973	54759974	54759973	-	High_confidence	13	14	15	0.556980	3.323231	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	1.000000
testis_male_adult_54_years	chr19	49839230	49839247	49839230	+	RAMPAGE_only	23	24	36	1.336752	4.771143	chr19	49838174	49839413	DNA|hAT-Charlie|Charlie8	+	chr19	49835057	49840383	MED25|ENST00000593767.2	+	49835057,49835533,49835726,49836225,49838579	49835177,49835605,49835945,49836406,49840383	0.944444
testis_male_adult_54_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	26	29	30	1.113960	4.396292	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.533333
testis_male_adult_54_years	chr1	232331587	232331635	232331613	+	High_confidence	4	4	18	0.668376	3.572469	chr1	232331234	232333104	Retroposon|SVA|SVA_D	+	chr1	232331376	232333333	STRG.26531.1	+	232331376	232333333	0.888889
testis_male_adult_54_years	chr4	117361300	117361310	117361307	+	High_confidence	3	3	10	0.371320	2.947703	chr4	117361130	117361374	LTR|ERV1|MER50	+	chr4	117361287	117371891	STRG.100678.1	+	117361287,117371591	117361506,117371891	0.600000
testis_male_adult_54_years	chr13	46464837	46464838	46464837	-	High_confidence	14	15	18	0.668376	3.969816	chr13	46464671	46464930	LTR|ERV1|HERVE-int	+	chr13	46455202	46465457	LINC01198|ENST00000650240.1	-	46455202,46457839,46460944,46464674	46455511,46457913,46461170,46465457	0.611111
testis_male_adult_54_years	chrX	135713624	135713653	135713624	+	High_confidence	4	4	24	0.891168	2.833321	chrX	135713526	135713749	LTR|ERVL|LTR41	+	chrX	135713452	135723246	CT45A1|NM_001017417.2	+	135713452,135718934,135721027,135721657,135722975	135713690,135719109,135721276,135721751,135723246	0.875000
testis_male_adult_54_years	chr4	55486509	55486540	55486539	-	RAMPAGE_only	7	7	31	1.151092	4.429530	chr4	55486051	55487998	LINE|L1|HAL1	-	chr4	55427902	55510027	CLOCK|ENST00000309964.8	-	55427902,55438281,55442431,55443686,55444632,55448778,55449395,55450090,55453053,55453676,55455896,55456217,55458891,55459147,55463684,55470716,55475962,55478814,55479639,55482738,55489373,55509911	55435594,55438537,55442634,55443896,55444785,55448868,55449496,55450232,55453129,55453824,55456003,55456300,55459010,55459261,55463805,55470806,55476054,55478963,55479699,55482828,55489465,55510027	0.903226
testis_male_adult_54_years	chr3	196822004	196822005	196822004	+	RAMPAGE_only	11	11	17	0.631244	3.452820	chr3	196821700	196822040	LINE|L1|L1MB7	+	chr3	196739856	196832647	PAK2|ENST00000327134.7	+	196739856,196782625,196801926,196803016,196805351,196806578,196807781,196810589,196812218,196812738,196814450,196818056,196820370,196827195,196828318	196740157,196782833,196802027,196803164,196805383,196806686,196807914,196810653,196812267,196812851,196814568,196818156,196820567,196827333,196832647	0.941176
testis_male_adult_54_years	chr9	38076500	38076504	38076503	+	High_confidence	74	79	120	4.455841	5.680625	chr9	38075189	38077013	LTR|ERV1|LTR12C	+	chr9	38076261	38088496	STRG.201289.1	+	38076261,38079507	38077013,38088496	0.916667
testis_male_adult_54_years	chr4	4369835	4369846	4369835	+	RAMPAGE_only	4	5	14	0.519848	3.546594	chr4	4369885	4370134	LTR|ERVL-MaLR|MLT1D	+	chr4	4366815	4384693	STRG.88143.10	+	4366815,4380982,4384518	4370615,4381073,4384693	0.642857
testis_male_adult_54_years	chr16	68197513	68197536	68197535	+	RAMPAGE_only	3	3	10	0.371320	2.947703	chr16	68197473	68197589	SINE|Alu|FLAM_A	+	chr16	68174589	68229258	STRG.308660.24	+	68174589,68183239,68190767,68214328,68217710,68226349	68181530,68183366,68191775,68214432,68221284,68229258	0.500000
testis_male_adult_54_years	chr18	48343598	48343603	48343598	-	RAMPAGE_only	2	2	7	0.259924	2.584963	chr18	48343543	48343668	SINE|MIR|MIR	+	chr18	48041032	48338391	ZBTB7C|ENST00000586743.5	-	48041032,48076935,48165130,48185933,48338173	48041123,48077003,48165257,48185995,48338391	0.714286
testis_male_adult_54_years	chr11	57794056	57794070	57794056	+	RAMPAGE_only	5	5	13	0.482716	3.188722	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.846154
testis_male_adult_54_years	chr21	26357790	26357810	26357809	+	High_confidence	33	42	120	4.455841	6.420530	chr21	26357621	26358062	LTR|ERVL-MaLR|MLT1C	+	chr21	26357741	26358554	STRG.349859.1	+	26357741	26358554	0.708333
testis_male_adult_54_years	chr11	70165169	70165186	70165185	+	High_confidence	3	3	11	0.408452	3.121928	chr11	70164951	70165389	LTR|ERVL-MaLR|MLT1C	-	chr11	70165189	70181763	STRG.236148.9	+	70165189,70165469,70167241,70170886,70180003	70165331,70165570,70167387,70171039,70181763	0.818182
testis_male_adult_54_years	chr1	183502389	183502390	183502389	+	RAMPAGE_only	7	7	10	0.371320	2.725481	chr1	183502357	183502426	LINE|CR1|X6A_LINE	+	chr1	183472526	183554190	SMG7|ENST00000515829.6	+	183472526,183512836,183515873,183517687,183526595,183527955,183528891,183529397,183533163,183533675,183537144,183538379,183540983,183542075,183544352,183544929,183545965,183549207,183549763,183550750,183551044,183551817	183472649,183512868,183515991,183517820,183526767,183528027,183529042,183529533,183533326,183533832,183537215,183538440,183541103,183542364,183544497,183545312,183546337,183549288,183549923,183550921,183551190,183554190	0.800000
testis_male_adult_54_years	chr22	47631658	47631711	47631678	+	High_confidence	45	46	259	9.617191	6.878645	chr22	47631336	47631805	LTR|ERVL|MLT2B1	-	chr22	47631673	47855600	AL117329.1|ENST00000423737.5	+	47631673,47635179,47686199,47686574,47686802,47687140,47704588,47738433,47854910	47631886,47635353,47686312,47686695,47686938,47687206,47704747,47738576,47855600	0.656371
testis_male_adult_54_years	chr7	98560234	98560270	98560269	+	High_confidence	3	6	16	0.594112	3.452820	chr7	98560174	98560317	LTR|ERVL-MaLR|MLT1K	+	chr7	98560463	98560802	STRG.169373.1	+	98560463	98560802	0.875000
testis_male_adult_54_years	chr3	152152466	152152503	152152466	+	High_confidence	18	19	106	3.935993	5.685548	chr3	152152232	152153792	LTR|ERV1|LTR12C	+	chr3	152153391	152154450	STRG.80480.1	+	152153391	152154450	0.726415
testis_male_adult_54_years	chr15	73335097	73335119	73335112	-	RAMPAGE_only	7	7	26	0.965432	4.213661	chr15	73334833	73335196	LTR|ERVL-MaLR|MLT1A0	+	chr15	73319858	73369264	HCN4|ENST00000261917.3	-	73319858,73324088,73324954,73325297,73329572,73332130,73343384,73367485	73323949,73324253,73325195,73325444,73329791,73332292,73343808,73369264	0.807692
testis_male_adult_54_years	chr13	98821300	98821337	98821300	-	RAMPAGE_only	2	2	6	0.222792	2.584963	chr13	98821110	98821304	LTR|ERVL|LTR33	+	chr13	98807660	98829366	DOCK9|ENST00000451563.5	-	98807660,98809351,98810168,98824397,98826829,98829306	98807807,98809465,98810291,98824504,98826887,98829366	0.666667
testis_male_adult_54_years	chr4	106238695	106238696	106238695	-	High_confidence	19	19	22	0.816904	4.201841	chr4	106238640	106239192	LINE|L1|L1MCa	+	chr4	106232997	106238740	TBCK|ENST00000503516.1	-	106232997,106233587,106235268,106236389,106236758,106237490,106238596	106233064,106233650,106235367,106236519,106236808,106237538,106238740	0.727273
testis_male_adult_54_years	chr17	21085238	21085239	21085238	-	High_confidence	158	160	209	7.760590	5.238735	chr17	21084822	21086036	LTR|ERV1|LTR12D	-	chr17	21084420	21085277	STRG.314781.1	-	21084420	21085277	0.985646
testis_male_adult_54_years	chr1	144140261	144140367	144140324	-	RAMPAGE_only	16	16	92	3.416145	5.998294	chr1	144140287	144140984	LINE|L1|L1MEd	-	chr1	144136598	144142855	STRG.15889.1	-	144136598,144140055	144139284,144142855	0.695652
testis_male_adult_54_years	chr8	135689951	135689984	135689951	-	High_confidence	42	42	63	2.339317	4.760507	chr8	135689535	135690946	LTR|ERV1|LTR12C	-	chr8	135689425	135689934	STRG.194872.1	-	135689425	135689934	0.920635
testis_male_adult_54_years	chr22	23625655	23625671	23625670	-	RAMPAGE_only	12	13	39	1.448148	4.912273	chr22	23625342	23625934	LTR|ERV1|LTR71B	+	chr22	23613286	23632023	DRICH1|ENST00000614553.1	-	23613286,23613638,23614134,23616852,23617574,23619363,23620593,23622090,23624882,23625980,23631815	23613330,23613660,23614214,23616874,23617657,23619393,23620615,23622176,23624904,23626048,23632023	0.666667
testis_male_adult_54_years	chr10	2014164	2014180	2014172	-	High_confidence	3	3	14	0.519848	3.521641	chr10	2013902	2014254	LTR|ERVL-MaLR|MLT1A0	+	chr10	2005472	2014348	LINC00700|NR_040253.2	-	2005472,2013246,2014134	2007143,2013458,2014348	0.571429
testis_male_adult_54_years	chr11	60649200	60649203	60649200	+	RAMPAGE_only	3	3	7	0.259924	2.584963	chr11	60648916	60649608	LINE|L1|L1M4	+	chr11	60647280	60687149	LINC00301|ENST00000527161.5	+	60647280,60649167,60660721,60686909	60647592,60649310,60660775,60687149	0.714286
testis_male_adult_54_years	chr18	6834479	6834495	6834493	+	High_confidence	248	320	586	21.759359	7.352869	chr18	6834140	6834545	LINE|L2|L2c	-	chr18	6834479	6912415	ARHGAP28|ENST00000531294.5	+	6834479,6837196,6851033,6859811,6868149,6870589,6873408,6873683,6876130,6882136,6887156,6889887,6890429,6894834,6896501,6908959,6912059	6834539,6837414,6851115,6859897,6868234,6870732,6873574,6873775,6876208,6882299,6887239,6890085,6890543,6894891,6896626,6909024,6912415	0.943686
testis_male_adult_54_years	chr2	112063831	112063832	112063831	+	RAMPAGE_only	6	6	9	0.334188	3.000000	chr2	112063385	112063860	LINE|L2|L2c	+	chr2	112055281	112119318	STRG.44019.2	+	112055281,112059976,112064161,112066935,112074911,112077191,112081056,112081334,112086004,112089624,112091711,112097043,112098594,112100621,112106001,112107787,112112898,112116083	112055756,112060037,112064253,112067067,112074962,112077282,112081118,112081518,112086104,112089718,112091783,112097291,112098698,112100695,112106075,112107840,112112929,112119318	0.777778
testis_male_adult_54_years	chr14	39170606	39170616	39170606	-	High_confidence	9	9	15	0.556980	3.521641	chr14	39170565	39170853	SINE|Alu|AluSp	+	chr14	39147810	39170532	TRAPPC6B|ENST00000469361.5	-	39147810,39151745,39154210,39158284,39170014	39150381,39151839,39154294,39159550,39170532	0.800000
testis_male_adult_54_years	chr17	46949089	46949112	46949089	+	RAMPAGE_only	33	35	133	4.938557	5.677081	chr17	46949015	46949582	LTR|ERVL-MaLR|MLT1G3	-	chr17	46931133	46952830	GOSR2|ENST00000639713.1	+	46931133,46932066,46935028,46938598,46952662	46931207,46932199,46935169,46938704,46952830	0.796992
testis_male_adult_54_years	chr11	123060124	123060229	123060168	-	High_confidence	81	81	379	14.073032	5.792280	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.540897
testis_male_adult_54_years	chr2	33891050	33891062	33891050	+	RAMPAGE_only	4	5	14	0.519848	3.664498	chr2	33890751	33891286	LTR|ERV1|LTR12F	+	chr2	33706907	34061047	LINC01320|ENST00000442026.1	+	33706907,33855687,33886371,33926839,33944427,34060749,34061018	33706953,33855753,33886474,33926968,33944553,34060927,34061047	0.571429
testis_male_adult_54_years	chr15	85634713	85634735	85634721	+	High_confidence	3	3	12	0.445584	3.459432	chr15	85634568	85636615	LINE|L1|L1ME1	-	chr15	85635096	85744677	AKAP13|ENST00000560579.5	+	85635096,85639373,85645817,85655416,85658536,85664562,85669721,85682157,85684740,85693276,85708018,85710578,85715787,85717289,85718006,85719075,85721990,85722229,85723071,85726409,85727065,85727380,85730512,85734991,85735559,85736089,85740221,85741045,85743491,85744627	85635105,85639449,85645954,85655787,85658590,85664755,85669830,85682212,85684873,85693451,85708086,85710645,85715923,85717402,85718159,85719326,85722116,85722347,85723320,85726486,85727247,85727463,85730707,85735150,85735630,85736134,85740272,85741495,85743825,85744677	0.583333
testis_male_adult_54_years	chr2	139410924	139410957	139410956	+	High_confidence	63	65	120	4.455841	5.155845	chr2	139410158	139411367	LTR|ERV1|LTR12C	+	chr2	139410385	139411653	STRG.47111.1	+	139410385	139411653	0.975000
testis_male_adult_54_years	chr11	129883690	129883709	129883708	-	RAMPAGE_only	2	3	7	0.259924	2.584963	chr11	129883696	129883875	SINE|MIR|MIRb	+	chr11	129863635	129895584	STRG.245031.6	-	129863635,129864965,129865876,129869493,129872883,129873744,129874112,129874500,129875356,129876720,129877324,129878308,129878463,129881442,129881726,129882085,129882450,129883121,129884744,129885434,129886316,129888593,129892714,129894358,129895495	129864850,129865101,129865983,129870261,129873096,129874015,129874333,129874916,129875463,129876895,129877385,129878355,129878543,129881508,129881853,129882194,129882631,129884143,129885095,129885609,129886444,129888795,129892870,129894438,129895584	0.857143
testis_male_adult_54_years	chr2	70994337	70994382	70994357	-	High_confidence	6	7	21	0.779772	4.221928	chr2	70994036	70994405	LINE|L2|L2b	-	chr2	70988599	70994704	TEX261|ENST00000466731.5	-	70988599,70988914,70989748,70991829,70993695,70994640	70988715,70989017,70989816,70991983,70993775,70994704	0.666667
testis_male_adult_54_years	chr12	111841688	111841707	111841688	-	High_confidence	2	3	6	0.222792	2.584963	chr12	111841557	111841731	SINE|MIR|MIRb	+	chr12	111839806	111841706	MAPKAPK5-AS1|ENST00000609228.1	-	111839806,111841326	111840031,111841706	0.500000
testis_male_adult_54_years	chr8	144079470	144079471	144079470	+	High_confidence	6	6	9	0.334188	2.500000	chr8	144079449	144079767	LINE|L2|L2	-	chr8	144079422	144080579	EXOSC4|ENST00000527954.1	+	144079422,144080241	144080149,144080579	0.555556
testis_male_adult_54_years	chr1	98698869	98698889	98698888	+	RAMPAGE_only	6	6	15	0.556980	3.378783	chr1	98698937	98699054	LINE|L2|L2a	+	chr1	98688305	98760500	STRG.13215.4	+	98688305,98691534,98693456,98695517,98698705,98701816,98738236,98760053	98691185,98691699,98693795,98695716,98698905,98701903,98738389,98760500	0.933333
testis_male_adult_54_years	chr15	79744512	79744520	79744512	-	High_confidence	5	5	10	0.371320	3.321928	chr15	79744202	79744468	SINE|Alu|AluSx1	-	chr15	79743091	79743574	STRG.297797.1	-	79743091	79743574	0.700000
testis_male_adult_54_years	chr11	33141895	33141905	33141904	-	RAMPAGE_only	3	3	8	0.297056	2.521641	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33141430	33161491	CSTF3|NM_001033505.1	-	33141430,33141884,33161298	33141762,33141986,33161491	0.625000
testis_male_adult_54_years	chr10	92826781	92826830	92826781	+	High_confidence	7	7	55	2.042261	3.829861	chr10	92826510	92827023	LINE|L2|L2a	-	chr10	92826830	93059494	EXOC6|NM_001013848.3	+	92826830,92834712,92893348,92894793,92894929,92899598,92909426,92915757,92919981,92928338,92934143,92934309,92935813,92940726,92948273,92952272,92954629,92955579,92974052,92997473,93014193,93056923,93058222	92826944,92834824,92893520,92894841,92895020,92899644,92909631,92915913,92920050,92928422,92934190,92934430,92935885,92940824,92948379,92952382,92954741,92955714,92974232,92997615,93014267,93057036,93059494	0.890909
testis_male_adult_54_years	chr12	30755040	30755167	30755040	+	High_confidence	9	12	79	2.933429	5.537709	chr12	30754999	30755260	LINE|L1|L1M4b	+	chr12	30755020	30757917	STRG.250740.1	+	30755020	30757917	0.810127
testis_male_adult_54_years	chr1	87371664	87371672	87371671	-	High_confidence	19	20	31	1.151092	4.651084	chr1	87371408	87371643	LINE|L2|L2b	-	chr1	87353523	87371655	LINC01364|NR_038324.1	-	87353523,87354843,87357575,87371568	87353867,87355198,87357678,87371655	0.903226
testis_male_adult_54_years	chr15	67002417	67002432	67002431	-	High_confidence	11	11	22	0.816904	4.152391	chr15	67002340	67002853	LTR|ERVL-MaLR|MLT1F1	+	chr15	66986414	67002427	STRG.296208.1	-	66986414,66987157,67002337	66986497,66987647,67002427	0.863636
testis_male_adult_54_years	chr7	134075875	134075887	134075875	+	RAMPAGE_only	3	4	14	0.519848	3.546594	chr7	134075700	134076030	LTR|ERVL-MaLR|MLT1I	+	chr7	134069335	134103078	STRG.174045.17	+	134069335,134100187	134098246,134103078	0.857143
testis_male_adult_54_years	chr5	74143926	74143964	74143947	+	High_confidence	6	6	29	1.076828	4.494680	chr5	74143731	74144188	LINE|L2|L2	-	chr5	74144133	74144511	STRG.119405.1	+	74144133	74144511	0.620690
testis_male_adult_54_years	chr13	40356689	40356708	40356689	-	RAMPAGE_only	3	3	7	0.259924	2.807355	chr13	40356290	40362321	LINE|L1|L1PA2	+	chr13	40284776	40403766	LINC00598|ENST00000636192.1	-	40284776,40343956,40350108,40403598	40285666,40344205,40350302,40403766	1.000000
testis_male_adult_54_years	chr3	117609244	117609282	117609244	-	RAMPAGE_only	7	7	25	0.928300	4.386842	chr3	117609058	117609626	LTR|ERV1|LTR12	-	chr3	117608527	117613208	STRG.75366.1	-	117608527	117613208	0.800000
testis_male_adult_54_years	chr19	56158286	56158300	56158299	+	High_confidence	4	6	12	0.445584	3.095795	chr19	56158094	56158391	LTR|ERVL-MaLR|MLT1F	-	chr19	56157308	56159967	ZNF444|ENST00000592171.1	+	56157308,56158493,56159626	56157546,56158602,56159967	0.916667
testis_male_adult_54_years	chr6	68920456	68920467	68920456	+	High_confidence	62	63	223	8.280438	5.463757	chr6	68920235	68920537	SINE|Alu|AluY	+	chr6	68920343	68976455	STRG.143637.4	+	68920343,68930558,68936518,68943829,68956023,68956644,68974762,68975233	68920609,68930669,68936680,68943994,68956188,68956809,68974864,68976455	0.852018
testis_male_adult_54_years	chr3	107878064	107878079	107878075	-	High_confidence	40	70	231	8.577495	6.933909	chr3	107877786	107878371	LTR|ERVL-MaLR|MLT1G1	+	chr3	107841661	107878076	LINC00635|ENST00000488852.5	-	107841661,107842104,107843675,107848905,107857079,107872967,107876129,107877901	107842019,107842212,107843779,107849118,107857202,107873026,107876186,107878076	0.662338
testis_male_adult_54_years	chr9	123736327	123736377	123736327	-	RAMPAGE_only	4	6	17	0.631244	4.087463	chr9	123736227	123736378	SINE|MIR|MIRc	-	chr9	123401809	123676791	DENND1A|ENST00000394215.6	-	123401809,123403401,123440359,123450692,123452275,123454738,123457347,123457792,123557569,123583168,123609435,123630375,123652012,123667025,123671290,123676719	123401912,123403490,123440491,123450749,123452347,123454779,123457435,123457897,123557695,123583270,123609481,123630476,123652123,123667079,123671371,123676791	0.588235
testis_male_adult_54_years	chr1	67138870	67138871	67138870	+	High_confidence	18	18	25	0.928300	4.262692	chr1	67138809	67138927	LTR|ERVL-MaLR|MLT1K	+	chr1	67138861	67255937	STRG.8689.1	+	67138861,67168091,67169341,67182835,67200736,67206909,67219573,67236712,67240178,67255836	67139161,67168190,67169638,67182959,67200897,67207055,67219730,67236802,67240281,67255937	0.920000
testis_male_adult_54_years	chr12	93090466	93090480	93090479	+	High_confidence	4	4	8	0.297056	2.807355	chr12	93090424	93090629	SINE|MIR|MIRc	+	chr12	93090508	93109149	STRG.258798.1	+	93090508,93091339,93096114,93099332,93107307	93090628,93091444,93096236,93099403,93109149	0.500000
testis_male_adult_54_years	chr6	27283386	27283391	27283386	+	High_confidence	4	4	8	0.297056	3.000000	chr6	27282664	27283727	DNA|TcMar-Mariner|HSMAR1	-	chr6	27283394	27283877	STRG.138916.1	+	27283394	27283877	0.875000
testis_male_adult_54_years	chr9	132263255	132263280	132263278	-	RAMPAGE_only	4	7	16	0.594112	3.773557	chr9	132263232	132263299	DNA|hAT-Charlie|MER5A	-	chr9	132261355	132275382	SETX|ENST00000477049.1	-	132261355,132266126,132269614,132271709,132275255	132264985,132266249,132269702,132271808,132275382	0.937500
testis_male_adult_54_years	chr14	60245261	60245262	60245261	-	High_confidence	5	5	8	0.297056	2.521641	chr14	60245118	60245452	LINE|L2|L2a	+	chr14	60240131	60245336	AL157756.1|ENST00000553269.5	-	60240131,60242762,60245167	60240454,60242870,60245336	0.500000
testis_male_adult_54_years	chr2	179770563	179770574	179770572	-	High_confidence	4	6	12	0.445584	3.027169	chr2	179770512	179770864	DNA|TcMar-Tigger|Tigger16a	-	chr2	179443249	179769755	ZNF385B|ENST00000644742.1	-	179443249,179444875,179445549,179446524,179483271,179518527,179544826,179769502	179443468,179444977,179445728,179446770,179483434,179518638,179544969,179769755	0.916667
testis_male_adult_54_years	chrX	9034013	9034049	9034039	-	High_confidence	6	6	17	0.631244	3.750000	chrX	9033929	9034070	SINE|Alu|AluSq	+	chrX	9024231	9034127	FAM9B|NM_205849.3	-	9024231,9025483,9027867,9029306,9030260,9032129,9032340,9032958,9033851	9025377,9025583,9027966,9029418,9030360,9032161,9032461,9033075,9034127	0.941176
testis_male_adult_54_years	chr16	20735594	20735615	20735614	-	RAMPAGE_only	5	7	21	0.779772	4.037401	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20733663	20741964	THUMPD1|NM_001304550.1	-	20733663,20736859,20737707,20738896,20741508	20736358,20737286,20737956,20739071,20741964	0.857143
testis_male_adult_54_years	chr1	166850052	166850061	166850052	+	RAMPAGE_only	6	6	13	0.482716	3.546594	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166848924	166856344	STRG.18615.3	+	166848924,166849787,166852584	166849733,166850423,166856344	1.000000
testis_male_adult_54_years	chr12	122064308	122064333	122064332	+	RAMPAGE_only	5	5	17	0.631244	4.087463	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.529412
testis_male_adult_54_years	chr19	55262053	55262066	55262053	+	High_confidence	4	4	8	0.297056	2.750000	chr19	55262010	55262169	LTR|ERVL-MaLR|MLT1N2	-	chr19	55262066	55262906	STRG.339692.1	+	55262066	55262906	0.875000
testis_male_adult_54_years	chr10	93846015	93846016	93846015	+	High_confidence	58	58	64	2.376449	4.710240	chr10	93845002	93846425	LTR|ERV1|LTR12C	+	chr10	93846030	93846364	STRG.223525.1	+	93846030	93846364	0.750000
testis_male_adult_54_years	chrX	105116068	105116137	105116113	+	RAMPAGE_only	7	7	29	1.076828	4.418157	chrX	105115024	105116272	LTR|ERV1|LTR12C	-	chrX	104566314	105767829	IL1RAPL2|ENST00000372582.5	+	104566314,104658894,105195474,105233817,105267387,105484312,105717366,105740545,105748959,105755176,105766963	104567051,104658995,105195748,105234004,105267541,105484387,105717496,105740691,105749103,105755347,105767829	0.827586
testis_male_adult_54_years	chr8	2728416	2728452	2728451	-	High_confidence	13	14	86	3.193353	6.051094	chr8	2728201	2728557	LTR|ERV1|LTR12C	+	chr8	2701472	2728417	AC246817.2|ENST00000520570.1	-	2701472,2705214,2728329	2701894,2705286,2728417	0.558140
testis_male_adult_54_years	chr7	137276502	137276503	137276502	+	High_confidence	58	63	68	2.524977	5.256169	chr7	137276270	137276717	LTR|ERVL|MER70A	+	chr7	137276434	137314764	STRG.174696.1	+	137276434,137303146,137314615	137276632,137303257,137314764	0.602941
testis_male_adult_54_years	chr5	7373155	7373179	7373171	+	High_confidence	20	21	65	2.413581	5.290980	chr5	7373204	7373473	SINE|Alu|AluSc8	+	chr5	7373116	7379790	LINC02142|ENST00000500616.2	+	7373116,7379612	7373515,7379790	0.938462
testis_male_adult_54_years	chr5	151687244	151687252	151687250	-	High_confidence	7	14	25	0.928300	4.403856	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
testis_male_adult_54_years	chr7	6590251	6590293	6590251	+	High_confidence	4	4	35	1.299620	4.017900	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6596415	STRG.157941.16	+	6590143,6591645,6593835,6594434	6590475,6591867,6593988,6596415	0.800000
testis_male_adult_54_years	chr3	142560628	142560653	142560652	-	High_confidence	3	3	8	0.297056	2.807355	chr3	142560564	142560859	SINE|Alu|AluY	-	chr3	142496396	142560859	STRG.79691.5	-	142496396,142497012,142498596,142499626,142503361,142505138,142507930,142512259,142513500,142515394,142519668,142522727,142523992,142535079,142536107,142538481,142540903,142542664,142547724,142549478,142550131,142553226,142553639,142553824,142555876,142559250,142560262	142496520,142497192,142498774,142499718,142503453,142505303,142508109,142512470,142513638,142515515,142519784,142522841,142524199,142535205,142536201,142538625,142541034,142542757,142547910,142549673,142550302,142553398,142553740,142554015,142558776,142559441,142560859	0.750000
testis_male_adult_54_years	chr6	3083257	3083298	3083297	+	RAMPAGE_only	5	6	19	0.705508	3.576618	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3081942	3106051	STRG.134772.4	+	3081942,3089580,3104224,3105481	3085408,3089657,3104315,3106051	1.000000
testis_male_adult_54_years	chr14	40629866	40629952	40629930	-	High_confidence	4	4	34	1.262488	4.392583	chr14	40629527	40630203	LTR|ERV1|LTR12C	-	chr14	40539649	40629923	STRG.280238.1	-	40539649,40612362,40629319	40539923,40612558,40629923	0.941176
testis_male_adult_54_years	chr11	21262566	21262567	21262566	-	High_confidence	26	29	32	1.188224	4.625000	chr11	21261754	21263996	LINE|L1|HAL1	-	chr11	21260060	21262570	AC090857.2|ENST00000526362.1	-	21260060,21262537	21260750,21262570	0.781250
testis_male_adult_54_years	chr19	50793269	50793278	50793277	+	High_confidence	60	82	154	5.718330	5.590557	chr19	50793227	50793539	SINE|Alu|AluSx	+	chr19	50793271	50795219	STRG.338381.1	+	50793271,50793683,50793887,50794456,50794785,50795042	50793328,50793816,50793970,50794581,50794964,50795219	0.883117
testis_male_adult_54_years	chr2	88178616	88178641	88178618	+	RAMPAGE_only	4	7	21	0.779772	4.247928	chr2	88178556	88178647	LINE|L2|L2c	-	chr2	88174807	88186318	THNSL2|ENST00000496844.5	+	88174807,88175248,88178782,88182698,88182947,88185897	88174833,88175401,88179013,88182847,88183073,88186318	0.666667
testis_male_adult_54_years	chr1	153422620	153422648	153422627	-	High_confidence	24	29	83	3.081957	5.288665	chr1	153422593	153422644	SINE|Alu|Alu	-	chr1	153390032	153422633	STRG.16725.1	-	153390032,153390394,153422517	153390243,153390557,153422633	0.831325
testis_male_adult_54_years	chr1	158140633	158140650	158140633	-	High_confidence	12	13	37	1.373884	4.593429	chr1	158140301	158140599	LINE|L2|L2c	-	chr1	158132043	158140630	LINC01704|ENST00000442358.5	-	158132043,158132577,158133114,158140497	158132401,158132656,158133193,158140630	0.594595
testis_male_adult_54_years	chr11	46090540	46090545	46090540	-	RAMPAGE_only	2	2	7	0.259924	2.521641	chr11	46090495	46090712	DNA|hAT-Charlie|MER103C	-	chr11	45971347	46092205	PHF21A|ENST00000531959.5	-	45971347,45979759,46076753,46079133,46084165,46092182	45971367,45979966,46076840,46079166,46084302,46092205	0.714286
testis_male_adult_54_years	chr11	65382641	65382663	65382641	-	High_confidence	4	5	20	0.742640	3.531631	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65379452	65382645	SLC25A45|ENST00000529962.5	-	65379452,65379866,65380131,65380533,65381874,65382485	65379561,65379938,65380175,65380622,65381969,65382645	0.650000
testis_male_adult_54_years	chr15	88291525	88291549	88291548	+	High_confidence	30	30	90	3.341881	5.115294	chr15	88291516	88292042	LTR|ERVL-MaLR|MLT1K	+	chr15	88291576	88295716	STRG.299126.1	+	88291576,88295668	88291950,88295716	0.977778
testis_male_adult_54_years	chr2	32477520	32477568	32477567	+	RAMPAGE_only	6	6	19	0.705508	4.058814	chr2	32477616	32477749	SINE|Alu|AluJb	+	chr2	32436074	32611581	STRG.33990.2	+	32436074,32439507,32441328,32442064,32442323,32443490,32445520,32448794,32453807,32463193,32464508,32465064,32467524,32467902,32468436,32469394,32470167,32471013,32473111,32476212,32477367,32478634,32479461,32481319,32482428,32485642,32487646,32488587,32490040,32491424,32493539,32499546,32501712,32502794,32503041,32505004,32507979,32509737,32510525,32512932,32514989,32518253,32518816,32524887,32525463,32529650,32531354,32543240,32545642,32547849,32549312,32575155,32590805,32593914,32595033,32597750,32599738,32603005,32607454,32611447	32436184,32439686,32441462,32442226,32442455,32443588,32445668,32448928,32453942,32463381,32464823,32465164,32467739,32468111,32468783,32469614,32470301,32471151,32473239,32476344,32477583,32478818,32479617,32481453,32482582,32485759,32487801,32488714,32490151,32491558,32493667,32500109,32501888,32502891,32503236,32505205,32508259,32509994,32510634,32513154,32515770,32518397,32518946,32525019,32525628,32529824,32531551,32543541,32545860,32548014,32549481,32575366,32590978,32594060,32595144,32597968,32599900,32603083,32607643,32611581	0.894737
testis_male_adult_54_years	chr16	62725607	62725622	62725621	+	RAMPAGE_only	4	5	8	0.297056	3.000000	chr16	62724697	62726074	LTR|ERV1|LTR12C	+	chr16	62729393	62769545	STRG.307560.2	+	62729393,62768991	62730127,62769545	0.875000
testis_male_adult_54_years	chr19	45843030	45843053	45843034	-	High_confidence	172	175	466	17.303517	6.499219	chr19	45842924	45843320	LTR|ERVL-MaLR|MLT1K	+	chr19	45838592	45843037	SYMPK|ENST00000596518.1	-	45838592,45842249,45842708	45838615,45842489,45843037	0.804721
testis_male_adult_54_years	chr12	64139252	64139267	64139264	+	RAMPAGE_only	6	6	19	0.705508	3.572431	chr12	64138619	64139275	DNA|hAT-Charlie|MER20B	-	chr12	64127636	64142566	SRGAP1|ENST00000542841.1	+	64127636,64142294	64128200,64142566	0.789474
testis_male_adult_54_years	chr13	94396002	94396003	94396002	+	RAMPAGE_only	8	8	11	0.408452	3.321928	chr13	94395829	94396282	LTR|ERVL|LTR33	+	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.545455
testis_male_adult_54_years	chr1	9197006	9197033	9197032	-	RAMPAGE_only	5	5	12	0.445584	3.095795	chr1	9196990	9197115	SINE|MIR|MIR3	+	chr1	9179630	9198703	MIR34AHG|ENST00000635405.2	-	9179630,9196911	9182295,9198703	0.833333
testis_male_adult_54_years	chr6	36179665	36179689	36179688	-	RAMPAGE_only	3	5	9	0.334188	2.947703	chr6	36179595	36179726	SINE|Alu|FLAM_A	+	chr6	36158067	36197202	STRG.140686.4	-	36158067,36179616,36196036	36158941,36179707,36197202	0.888889
testis_male_adult_54_years	chr2	182340831	182340853	182340831	-	RAMPAGE_only	6	7	17	0.631244	3.969816	chr2	182340829	182340956	SINE|MIR|MIR3	+	chr2	182147035	182427031	PDE1A|ENST00000409365.5	-	182147035,182185891,182186467,182188978,182201438,182201687,182205939,182223863,182230005,182231014,182234431,182240109,182264300,182426577	182147152,182186079,182186588,182189060,182201559,182201789,182206065,182223964,182230146,182231131,182234498,182240292,182264414,182427031	0.705882
testis_male_adult_54_years	chr5	21341308	21341417	21341322	-	High_confidence	21	22	242	8.985947	6.457848	chr5	21341224	21342284	LTR|ERV1|LTR12E	+	chr5	21189976	21341466	STRG.114678.1	-	21189976,21271714,21329565,21341184	21190044,21271779,21329630,21341466	0.528926
testis_male_adult_54_years	chr12	122218272	122218280	122218272	-	High_confidence	16	16	28	1.039696	3.865999	chr12	122218031	122218232	DNA|hAT-Charlie|MER58A	-	chr12	122208315	122218289	DIABLO|ENST00000439489.6	-	122208315,122209696,122216487,122216758,122218265	122208577,122209858,122216584,122216869,122218289	0.714286
testis_male_adult_54_years	chr15	51077707	51077733	51077707	-	High_confidence	156	197	482	17.897629	7.473464	chr15	51077571	51078015	LTR|ERV1|MER61B	+	chr15	51039044	51077741	STRG.294519.1	-	51039044,51043650,51070167	51043602,51069606,51077741	0.995851
testis_male_adult_54_years	chr7	99410146	99410162	99410146	+	High_confidence	13	14	22	0.816904	4.070656	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.772727
testis_male_adult_54_years	chr5	180432890	180432891	180432890	+	High_confidence	25	25	36	1.336752	4.614997	chr5	180431992	180433182	LTR|ERV1|LTR12E	+	chr5	180432908	180433271	STRG.134237.1	+	180432908	180433271	0.777778
testis_male_adult_54_years	chr10	123776705	123776706	123776705	+	High_confidence	11	11	13	0.482716	3.392747	chr10	123776443	123776894	LINE|L1|L1ME4c	+	chr10	123776669	123777749	AC009987.1|ENST00000446888.1	+	123776669,123777387	123777113,123777749	0.923077
testis_male_adult_54_years	chr16	61128961	61129042	61129025	+	High_confidence	18	18	100	3.713201	5.902467	chr16	61127777	61129337	LTR|ERV1|LTR12C	-	chr16	61128878	61365800	STRG.307470.1	+	61128878,61193622,61365497	61129393,61193694,61365800	0.680000
testis_male_adult_54_years	chr16	20679391	20679392	20679391	+	RAMPAGE_only	5	5	8	0.297056	2.521641	chr16	20678043	20681722	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.500000
testis_male_adult_54_years	chr13	80356354	80356355	80356354	+	High_confidence	78	80	106	3.935993	4.803650	chr13	80355362	80356770	LTR|ERV1|LTR12C	+	chr13	80356210	80356814	STRG.272182.1	+	80356210	80356814	0.933962
testis_male_adult_54_years	chr11	45253905	45253944	45253905	+	High_confidence	52	55	128	4.752897	6.072121	chr11	45253748	45254095	LTR|ERVL-MaLR|MLT1J2	+	chr11	45253883	45254583	AC103681.1|ENST00000531663.1	+	45253883,45254184	45253907,45254583	0.765625
testis_male_adult_54_years	chr7	150038524	150038561	150038560	+	RAMPAGE_only	20	21	39	1.448148	5.009636	chr7	150038140	150038716	LTR|ERV1|HERVE-int	-	chr7	150034265	150045092	STRG.177026.5	+	150034265,150037816,150039104,150044749	150037735,150038713,150043239,150045092	0.923077
testis_male_adult_54_years	chr8	57219172	57219174	57219172	+	High_confidence	3	5	7	0.259924	2.521641	chr8	57219003	57219613	LTR|ERV1|MER50-int	-	chr8	57219088	57232636	LINC01606|ENST00000519160.5	+	57219088,57219409,57220110,57221398,57222168,57222594,57229544,57231391	57219138,57219623,57220295,57221607,57222271,57222696,57229728,57232636	1.000000
testis_male_adult_54_years	chr11	95482403	95482417	95482409	+	High_confidence	7	7	24	0.891168	4.277613	chr11	95481778	95483422	Retroposon|SVA|SVA_D	+	chr11	95482405	95497553	AP001790.1|ENST00000511947.2	+	95482405,95483942,95497493	95482660,95484197,95497553	0.750000
testis_male_adult_54_years	chr4	7660787	7660788	7660787	+	RAMPAGE_only	8	8	8	0.297056	3.000000	chr4	7660573	7660795	SINE|MIR|MIRb	+	chr4	7396277	7742836	SORCS2|ENST00000329016.10	+	7396277,7531529,7638327,7654133,7661499,7664352,7667123,7676049,7682742,7689485,7697197,7703279,7704176,7712732,7714239,7715182,7718011,7723696,7725153,7726779,7728349,7729586,7733321,7734271,7735399,7737065,7740199	7396355,7531629,7638492,7654207,7661564,7664471,7667213,7676229,7682889,7689588,7697274,7703371,7704284,7712853,7714373,7715311,7718183,7723883,7725287,7726903,7728462,7729712,7733421,7734365,7735405,7737172,7742836	0.875000
testis_male_adult_54_years	chr11	63616205	63616210	63616209	-	High_confidence	5	6	12	0.445584	3.084963	chr11	63615968	63616395	LINE|L1|L1MA8	-	chr11	63574849	63616883	STRG.235607.2	-	63574849,63590099,63598060,63613999,63616586	63575046,63590368,63598163,63614068,63616883	0.583333
testis_male_adult_54_years	chr11	68179564	68179565	68179564	-	High_confidence	4	4	7	0.259924	2.584963	chr11	68179564	68179619	DNA|TcMar-Tigger|Tigger19a	+	chr11	68171676	68179822	KMT5B|ENST00000524672.2	-	68171676,68173803,68175017,68179469	68171709,68173913,68175183,68179822	0.571429
testis_male_adult_54_years	chr4	39641666	39641681	39641680	+	RAMPAGE_only	16	16	26	0.965432	4.315824	chr4	39641503	39641956	LTR|ERVL-MaLR|MLT1F	+	chr4	39639139	39653397	AC108471.2|ENST00000529094.5	+	39639139,39641693,39650376,39651265,39653372	39639294,39641792,39650454,39651406,39653397	0.807692
testis_male_adult_54_years	chr3	60277564	60277576	60277564	-	RAMPAGE_only	2	3	8	0.297056	2.750000	chr3	60277246	60277886	LTR|ERV1|LTR9D	+	chr3	60243055	60316111	STRG.68952.1	-	60243055	60316111	0.875000
testis_male_adult_54_years	chr19	7006395	7006436	7006411	-	High_confidence	47	50	241	8.948815	5.892599	chr19	7006265	7006561	LTR|ERVL-MaLR|MLT1K	-	chr19	7004952	7006415	FLJ25758|NR_024372.1	-	7004952	7006415	0.995851
testis_male_adult_54_years	chr2	130692981	130693006	130692991	+	High_confidence	12	12	36	1.336752	4.829966	chr2	130693010	130693142	SINE|Alu|AluY	+	chr2	130693281	130696388	STRG.46606.17	+	130693281,130695466	130695334,130696388	0.750000
testis_male_adult_54_years	chr12	9167509	9167558	9167509	-	High_confidence	5	5	36	1.336752	4.936286	chr12	9167367	9167582	LINE|L1|L1PA10	-	chr12	9160432	9167497	PZP|ENST00000539983.5	-	9160432,9161032,9162280,9162596,9163667,9164132,9165138,9166051,9166980	9160490,9161116,9162444,9162648,9163789,9164259,9165367,9166202,9167497	0.750000
testis_male_adult_54_years	chr10	125752194	125752217	125752194	+	RAMPAGE_only	3	3	9	0.334188	3.169925	chr10	125751632	125752271	LTR|ERVL|MER77	-	chr10	125753778	125763582	EDRF1|ENST00000525358.1	+	125753778,125761227,125763300	125753845,125761314,125763582	0.555556
testis_male_adult_54_years	chr16	62725656	62725660	62725659	+	RAMPAGE_only	9	10	19	0.705508	3.787144	chr16	62724697	62726074	LTR|ERV1|LTR12C	+	chr16	62729393	62769545	STRG.307560.2	+	62729393,62768991	62730127,62769545	0.578947
testis_male_adult_54_years	chr4	21856038	21856087	21856038	-	High_confidence	7	7	33	1.225356	4.515320	chr4	21855992	21856117	DNA|hAT-Charlie|MER102c	+	chr4	21854984	21856245	STRG.91606.1	-	21854984	21856245	0.969697
testis_male_adult_54_years	chr21	21909961	21909962	21909961	-	High_confidence	54	54	55	2.042261	5.231468	chr21	21909493	21910287	LTR|ERV1|LTR12D	-	chr21	21909325	21909996	STRG.349020.1	-	21909325	21909996	0.890909
testis_male_adult_54_years	chr8	140934572	140934603	140934593	-	High_confidence	9	10	27	1.002564	4.563856	chr8	140934491	140934664	LINE|L2|L2	+	chr8	140879511	140934590	PTK2|ENST00000521395.5	-	140879511,140890542,140925660,140934492	140879637,140890769,140925749,140934590	0.555556
testis_male_adult_54_years	chr1	25870644	25870663	25870659	-	High_confidence	3	5	12	0.445584	3.188722	chr1	25870560	25870687	SINE|MIR|MIR1_Amn	-	chr1	25861209	25871253	PAQR7|ENST00000374296.3	-	25861209,25870608	25863861,25871253	0.833333
testis_male_adult_54_years	chr16	20736882	20736902	20736882	-	RAMPAGE_only	8	9	15	0.556980	3.373557	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	1.000000
testis_male_adult_54_years	chr12	51368684	51368692	51368691	-	High_confidence	9	9	15	0.556980	3.664498	chr12	51368395	51368705	SINE|Alu|AluSx1	-	chr12	51367885	51368631	STRG.253371.1	-	51367885	51368631	0.866667
testis_male_adult_54_years	chr7	87040212	87040249	87040222	-	RAMPAGE_only	6	7	22	0.816904	4.201841	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86879938	87059631	KIAA1324L|ENST00000444627.5	-	86879938,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87059324	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912171,86913065,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87059631	0.500000
testis_male_adult_54_years	chr16	12144548	12144590	12144568	+	RAMPAGE_only	24	24	93	3.453277	6.259589	chr16	12144372	12144711	LTR|ERVL-MaLR|MSTD	+	chr16	12129696	12527397	SNX29|ENST00000564791.5	+	12129696,12199600,12277932,12356162,12398445,12403447,12477718,12524701,12526549	12129758,12199683,12278036,12356279,12398501,12403529,12477859,12524841,12527397	0.591398
testis_male_adult_54_years	chr20	13731798	13731811	13731810	-	RAMPAGE_only	8	8	14	0.519848	3.334679	chr20	13731644	13731828	LTR|ERVL|MER21A	+	chr20	13714321	13784886	ESF1|ENST00000202816.5	-	13714321,13717367,13718907,13728377,13733720,13759691,13766776,13769906,13771330,13772514,13775156,13775872,13782503,13784821	13715167,13717514,13718984,13728465,13733842,13759853,13766924,13770021,13771483,13772615,13775270,13776270,13783183,13784886	0.928571
testis_male_adult_54_years	chr20	8600613	8600661	8600634	+	High_confidence	5	5	21	0.779772	3.105672	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	1.000000
testis_male_adult_54_years	chr1	23003968	23003989	23003988	-	RAMPAGE_only	32	32	75	2.784901	5.179442	chr1	23003540	23003991	LTR|ERV1|HERVH-int	-	chr1	22999118	23002811	STRG.2771.1	-	22999118,23002133	22999250,23002811	0.600000
testis_male_adult_54_years	chr15	58796068	58796085	58796073	+	RAMPAGE_only	38	38	85	3.156221	5.525141	chr15	58795859	58796196	LINE|L2|L2	-	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	0.705882
testis_male_adult_54_years	chr5	66504104	66504137	66504136	+	High_confidence	46	49	101	3.750333	4.877011	chr5	66503112	66504552	LTR|ERV1|LTR12C	+	chr5	66504124	66512034	STRG.118952.1	+	66504124,66510599	66504857,66512034	0.940594
testis_male_adult_54_years	chr9	116567606	116567626	116567625	+	High_confidence	7	7	25	0.928300	4.103465	chr9	116567591	116567698	LINE|L2|L2a	-	chr9	116568448	116586328	AL133284.1|ENST00000423715.1	+	116568448,116578938,116581937	116568928,116579063,116586328	0.640000
testis_male_adult_54_years	chr17	70703905	70703906	70703905	+	High_confidence	21	21	24	0.891168	4.142915	chr17	70703647	70704299	LTR|ERV1|LTR12_	+	chr17	70703922	70704605	STRG.321371.1	+	70703922	70704605	0.791667
testis_male_adult_54_years	chr5	99410598	99410613	99410598	+	RAMPAGE_only	9	9	22	0.816904	3.975418	chr5	99409838	99410830	LTR|ERV1|LTR12D	-	chr5	99524714	99579367	STRG.122945.2	+	99524714,99532628,99533795,99534188,99537849,99549412,99577722	99526107,99532816,99533944,99534598,99537921,99549532,99579367	0.590909
testis_male_adult_54_years	chr19	52981596	52981630	52981623	-	High_confidence	9	10	28	1.039696	4.280395	chr19	52981568	52981909	LINE|L2|L2a	-	chr19	52956040	52981654	AC010328.3|ENST00000600068.1	-	52956040,52970623,52980835,52981521	52956104,52970842,52980972,52981654	0.535714
testis_male_adult_54_years	chr1	144138004	144138011	144138009	-	RAMPAGE_only	5	6	10	0.371320	3.169925	chr1	144137778	144138318	LINE|L1|HAL1b	-	chr1	143312404	143316793	STRG.15761.1	-	143312404,143315602	143315106,143316793	0.700000
testis_male_adult_54_years	chr3	148922702	148922734	148922719	+	RAMPAGE_only	4	6	16	0.594112	3.906891	chr3	148922403	148922997	LTR|ERVL|MER21C	+	chr3	148940802	148955987	STRG.79946.1	+	148940802,148955581	148940933,148955987	0.750000
testis_male_adult_54_years	chr4	171043430	171043462	171043430	-	High_confidence	3	3	10	0.371320	3.321928	chr4	171042982	171044435	LTR|ERV1|LTR12C	+	chr4	171042675	171043674	STRG.108049.1	-	171042675	171043674	0.900000
testis_male_adult_54_years	chr13	45129934	45129951	45129934	+	RAMPAGE_only	4	4	14	0.519848	3.392747	chr13	45129671	45130161	LINE|L2|L2a	-	chr13	45120514	45284909	GTF2F2|ENST00000340473.7	+	45120514,45136732,45149769,45151686,45207423,45252870,45267232,45283441	45120721,45136806,45149788,45151831,45207505,45252970,45267376,45284909	0.857143
testis_male_adult_54_years	chr3	16216764	16216790	16216789	+	RAMPAGE_only	13	13	33	1.225356	4.937500	chr3	16216515	16217077	LTR|ERV1|MER50	-	chr3	16174708	16231992	GALNT15|ENST00000437509.3	+	16174708,16195759,16200618,16208502,16211123,16212568,16219402,16219909,16222614,16231792	16175690,16195926,16200823,16208670,16211241,16212763,16219534,16220014,16222758,16231992	0.515152
testis_male_adult_54_years	chr15	24558156	24558201	24558200	+	High_confidence	270	272	675	25.064107	7.417987	chr15	24558078	24558472	LTR|ERV1|PABL_B-int	-	chr15	24558216	24753389	STRG.291128.17	+	24558216,24566655,24567891,24569782,24570031,24574509,24574906,24587566,24623967,24746703,24752403	24558321,24566800,24568182,24569809,24570128,24574813,24575003,24587735,24624105,24746978,24753389	0.755556
testis_male_adult_54_years	chr5	82279492	82279508	82279494	+	High_confidence	3	5	9	0.334188	2.947703	chr5	82279305	82279599	LINE|L2|L2a	-	chr5	82279461	82318803	ATP6AP1L|ENST00000380167.8	+	82279461,82280959,82295492,82303486,82303773,82304614,82304933,82310156,82312610,82317997	82279878,82281011,82295544,82303527,82303832,82304850,82305481,82310207,82312851,82318803	0.888889
testis_male_adult_54_years	chr6	4769061	4769064	4769063	+	RAMPAGE_only	5	7	10	0.371320	2.921928	chr6	4768249	4769318	LINE|L1|L1MC3	+	chr6	4773040	4892347	CDYL|ENST00000483019.1	+	4773040,4891712	4773178,4892347	0.800000
testis_male_adult_54_years	chr2	156533987	156534000	156533987	+	RAMPAGE_only	11	11	27	1.002564	4.504706	chr2	156533738	156534506	LTR|ERV1|LTR1F1	-	chr2	156473571	156583058	GPD2|ENST00000409674.5	+	156473571,156476097,156496043,156510795,156512219,156513332,156549607,156550601,156557388,156568824,156569362,156570086,156571133,156578888,156579085,156579689,156582792	156473636,156476207,156496215,156510920,156512317,156513496,156549772,156550746,156557582,156568959,156569538,156570218,156571292,156579001,156579164,156579788,156583058	0.777778
testis_male_adult_54_years	chr16	67183456	67183503	67183466	-	High_confidence	16	16	57	2.116525	5.133341	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67179480	67183941	STRG.308490.6	-	67179480,67179814,67180040,67181557,67183261	67179562,67179958,67180666,67181697,67183941	0.877193
testis_male_adult_54_years	chr9	106932620	106932642	106932641	+	High_confidence	17	17	34	1.262488	4.690117	chr9	106932680	106932720	SINE|MIR|MIRc	+	chr9	106932636	106972225	ZNF462|ENST00000479166.1	+	106932636,106935502,106938915,106972004	106932805,106935621,106939107,106972225	0.676471
testis_male_adult_54_years	chr6	179292	179297	179296	+	High_confidence	3	4	11	0.408452	2.845351	chr6	178575	179332	LTR|ERV1|LTR12	-	chr6	179304	186899	STRG.133987.2	+	179304,184139	179349,186899	0.909091
testis_male_adult_54_years	chr1	156337772	156337792	156337772	-	High_confidence	4	4	9	0.334188	2.641604	chr1	156337637	156337783	SINE|MIR|MIRb	-	chr1	156324979	156338214	CCT3|ENST00000415548.1	-	156324979,156333215,156333546,156334712,156334867,156335826,156338153	156325089,156333284,156333643,156334775,156334918,156335888,156338214	0.777778
testis_male_adult_54_years	chr15	78245719	78245736	78245725	-	High_confidence	4	4	15	0.556980	3.589898	chr15	78245271	78246702	LTR|ERV1|LTR12C	-	chr15	78170913	78245688	ACSBG1|ENST00000560817.5	-	78170913,78173592,78174384,78178613,78179549,78180754,78181968,78182465,78182704,78245268	78171529,78173839,78174524,78178831,78179780,78180936,78182145,78182615,78182785,78245688	0.933333
testis_male_adult_54_years	chr3	149284778	149284779	149284778	+	High_confidence	42	42	59	2.190789	4.700028	chr3	149283837	149285090	LTR|ERV1|LTR12C	+	chr3	149284781	149333653	AC093001.1|ENST00000489011.1	+	149284781,149333503	149285182,149333653	0.864407
testis_male_adult_54_years	chr13	99514198	99514212	99514211	+	High_confidence	35	39	53	1.967997	5.028758	chr13	99514054	99514616	DNA|TcMar-Tigger|Tigger3c	+	chr13	99514214	99537862	TM9SF2|ENST00000463709.1	+	99514214,99517613,99519547,99520035,99529466,99536607,99537738	99514316,99517681,99519628,99520129,99529594,99536737,99537862	0.641509
testis_male_adult_54_years	chr2	113449565	113449586	113449565	+	RAMPAGE_only	2	2	8	0.297056	2.521641	chr2	113449494	113449810	LINE|L1|HAL1b	-	chr2	113437878	113462834	CBWD2|ENST00000492566.1	+	113437878,113441350,113443766,113444963,113453138,113454740,113460672,113462407	113438022,113441437,113443863,113445055,113453198,113454778,113460719,113462834	0.750000
testis_male_adult_54_years	chr14	49636356	49636357	49636356	-	RAMPAGE_only	7	7	10	0.371320	2.725481	chr14	49636036	49636340	SINE|Alu|AluSx1	-	chr14	49625173	49635230	DNAAF2|NM_018139.2	-	49625173,49628011,49633286	49626048,49628155,49635230	0.700000
testis_male_adult_54_years	chr9	123518733	123518741	123518740	-	RAMPAGE_only	66	66	181	6.720894	6.303598	chr9	123518675	123519094	LINE|L2|L2a	+	chr9	123382026	123930107	STRG.210657.1	-	123382026,123383654,123403401,123440359,123450692,123452275,123452825,123454738,123457347,123457792,123557569,123583168,123609435,123630375,123652012,123667025,123671290,123676719,123757702,123769513,123792586,123878950,123929888	123382625,123383913,123403490,123440491,123450749,123452347,123452908,123454779,123457435,123457897,123557695,123583270,123609481,123630476,123652123,123667079,123671371,123676789,123757822,123769563,123792630,123879021,123930107	0.828729
testis_male_adult_54_years	chr12	85053821	85053869	85053840	+	RAMPAGE_only	11	12	40	1.485280	4.953056	chr12	85053702	85053922	SINE|Alu|AluY	-	chr12	85036370	85245105	LRRIQ1|ENST00000393217.6	+	85036370,85038152,85040489,85044717,85046019,85047246,85052176,85055546,85065261,85066747,85072906,85098354,85098866,85104003,85106521,85121696,85124069,85127831,85137849,85152279,85153023,85153662,85154011,85160612,85229516,85232695,85244788	85036407,85038308,85040601,85044809,85046137,85047470,85052251,85057184,85065414,85066898,85073098,85098548,85098994,85104077,85106615,85121876,85124519,85128033,85137969,85152369,85153145,85153758,85154094,85160714,85229649,85232756,85245105	0.900000
testis_male_adult_54_years	chr18	2589112	2589121	2589120	+	RAMPAGE_only	5	6	13	0.482716	3.418296	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	0.923077
testis_male_adult_54_years	chr6	13743959	13743962	13743959	+	High_confidence	16	17	26	0.965432	4.501629	chr6	13743022	13744328	LTR|ERV1|LTR12C	+	chr6	13743971	13744886	STRG.136395.1	+	13743971	13744886	0.884615
testis_male_adult_54_years	chr2	153449815	153449825	153449824	-	High_confidence	3	3	8	0.297056	3.000000	chr2	153449589	153449985	LTR|ERVL-MaLR|MLT1A1	-	chr2	153421615	153449820	AC012501.1|ENST00000454312.1	-	153421615,153423435,153449670	153421963,153423492,153449820	0.500000
testis_male_adult_54_years	chr2	34992648	34992649	34992648	+	High_confidence	347	348	369	13.701712	5.759241	chr2	34991877	34992957	LTR|ERV1|LTR12D	+	chr2	34992655	34995608	STRG.33659.1	+	34992655	34995608	0.981030
testis_male_adult_54_years	chr17	7291646	7291648	7291647	-	RAMPAGE_only	8	18	18	0.668376	3.413834	chr17	7291562	7291737	DNA|hAT-Charlie|MER5A	-	chr17	7288262	7293935	YBX2|ENST00000571834.5	-	7288262,7288748,7289529,7289967,7290250,7291092,7293474,7293827	7288643,7288838,7289725,7290071,7290535,7292059,7293538,7293935	1.000000
testis_male_adult_54_years	chr1	112957226	112957227	112957226	-	High_confidence	5	5	8	0.297056	2.750000	chr1	112957083	112957260	SINE|MIR|MIRb	-	chr1	112956682	112957135	STRG.14875.1	-	112956682	112957135	0.500000
testis_male_adult_54_years	chr3	128626815	128626823	128626822	-	RAMPAGE_only	3	3	9	0.334188	3.000000	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.888889
testis_male_adult_54_years	chr15	42638364	42638422	42638374	+	RAMPAGE_only	3	3	16	0.594112	3.327820	chr15	42638423	42638526	SINE|Alu|AluSz6	+	chr15	42629841	42670050	STARD9|ENST00000568493.1	+	42629841,42634855,42637906,42638025,42638699,42651015,42652519,42661157,42662793,42663280,42669157	42630146,42634972,42637939,42638087,42638812,42651085,42652592,42661225,42662891,42663917,42670050	0.812500
testis_male_adult_54_years	chr5	89003700	89003718	89003714	+	High_confidence	10	15	43	1.596676	5.129639	chr5	89002747	89004166	LTR|ERV1|LTR12C	-	chr5	89003517	89168668	STRG.121593.8	+	89003517,89094958,89150532,89168249	89004184,89095029,89150595,89168668	0.581395
testis_male_adult_54_years	chr9	544866	544941	544866	+	RAMPAGE_only	2	2	13	0.482716	3.334679	chr9	544821	544983	LINE|L2|L2	-	chr9	528503	549531	STRG.195959.20	+	528503,540507,549189	539633,547341,549531	1.000000
testis_male_adult_54_years	chr1	210096643	210096647	210096643	+	RAMPAGE_only	5	5	11	0.408452	3.321928	chr1	210096261	210097113	LTR|ERVL|LTR102_Mam	-	chr1	210021045	210162967	SYT14|ENST00000534859.2	+	210021045,210094321,210100011,210155720,210159399,210160728	210021254,210094593,210100461,210155910,210159477,210162967	0.818182
testis_male_adult_54_years	chr21	29000158	29000227	29000188	-	RAMPAGE_only	25	27	80	2.970561	4.512126	chr21	29000000	29001393	LTR|ERV1|LTR12C	+	chr21	28997109	29002876	STRG.350438.2	-	28997109,28998588	28998041,29002876	1.000000
testis_male_adult_54_years	chr9	133023876	133023942	133023906	-	High_confidence	7	7	40	1.485280	4.803056	chr9	133023772	133024103	LTR|ERVL-MaLR|MLT1A0	-	chr9	133023105	133023981	STRG.211535.1	-	133023105	133023981	0.950000
testis_male_adult_54_years	chr2	207559121	207559163	207559135	+	High_confidence	18	18	87	3.230485	5.635120	chr2	207558942	207559254	LINE|L2|L2b	+	chr2	207559121	207571777	CREB1|ENST00000480189.5	+	207559121,207560225,207567462,207570178,207571733	207559255,207560372,207567563,207570321,207571777	0.678161
testis_male_adult_54_years	chr1	247879294	247879334	247879294	-	High_confidence	11	11	45	1.670940	4.784942	chr1	247879033	247880115	LINE|L2|L2a	+	chr1	247875661	247879428	STRG.29006.1	-	247875661,247879120	247876530,247879428	0.711111
testis_male_adult_54_years	chr13	61670945	61670970	61670945	+	High_confidence	2	2	11	0.408452	2.521928	chr13	61670537	61671190	LTR|ERV1|MER61-int	-	chr13	61671078	61693609	STRG.269950.1	+	61671078,61693355	61671280,61693609	0.636364
testis_male_adult_54_years	chr13	52236320	52236338	52236320	-	RAMPAGE_only	3	4	7	0.259924	2.521641	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.857143
testis_male_adult_54_years	chr7	11567293	11567294	11567293	-	RAMPAGE_only	8	10	12	0.445584	3.251629	chr7	11567110	11567490	LTR|ERVL-MaLR|THE1C	-	chr7	11446301	11543059	THSD7A|ENST00000497575.1	-	11446301,11447229,11541418,11542961	11446324,11447424,11541631,11543059	0.916667
testis_male_adult_54_years	chr17	15106130	15106149	15106130	-	High_confidence	8	8	28	1.039696	4.504706	chr17	15105958	15106330	LTR|ERVL-MaLR|MLT1A0	-	chr17	15104984	15106187	CDRT8|NR_103559.1	-	15104984,15106027	15105543,15106187	0.785714
testis_male_adult_54_years	chr14	76706322	76706323	76706322	-	High_confidence	92	92	115	4.270181	5.480355	chr14	76705904	76707210	LTR|ERV1|LTR12C	-	chr14	76561992	76706366	STRG.286459.2	-	76561992,76601476,76705896	76563094,76601592,76706366	0.930435
testis_male_adult_54_years	chr18	14224564	14224565	14224564	+	RAMPAGE_only	15	18	19	0.705508	3.947703	chr18	14223571	14225651	Retroposon|SVA|SVA_A	+	chr18	14219913	14252140	STRG.324735.4	+	14219913,14221263,14222951,14227610,14232524,14234686,14242139,14243011,14244561,14248218,14248966,14249431,14250287,14251965	14220092,14222912,14226062,14227760,14232637,14234815,14242419,14243223,14244784,14248264,14249023,14249485,14250407,14252140	0.947368
testis_male_adult_54_years	chr3	44646466	44646467	44646466	+	RAMPAGE_only	6	6	9	0.334188	3.000000	chr3	44646305	44646632	LINE|L1|L1MC5a	+	chr3	44625094	44647778	ZNF197|ENST00000334075.6	+	44625094,44629073,44630813,44631061,44632104,44632472,44646490	44625143,44629544,44630946,44631221,44632196,44632599,44647778	0.555556
testis_male_adult_54_years	chr12	91179462	91179526	91179462	-	High_confidence	79	81	390	14.481484	6.425795	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.710256
testis_male_adult_54_years	chr9	135528465	135528471	135528465	+	High_confidence	56	56	84	3.119089	5.460903	chr9	135528404	135528620	LINE|L1|L1MEf	-	chr9	135528365	135529095	STRG.211766.1	+	135528365	135529095	0.952381
testis_male_adult_54_years	chr3	45068288	45068322	45068296	+	High_confidence	42	49	159	5.903990	6.192345	chr3	45067734	45068317	LTR|ERVL?|LTR89	+	chr3	45068010	45083022	STRG.66926.1	+	45068010,45070022,45081652,45082256	45068343,45070109,45081874,45083022	0.855346
testis_male_adult_54_years	chr13	30977608	30977630	30977627	-	High_confidence	16	16	51	1.893733	4.274940	chr13	30977577	30977723	LTR|Gypsy|MamGyp-int	-	chr13	30973288	30977623	AL353680.1|ENST00000433788.1	-	30973288,30974807,30977559	30973481,30974887,30977623	0.941176
testis_male_adult_54_years	chr2	23731405	23731432	23731405	-	RAMPAGE_only	3	3	8	0.297056	2.500000	chr2	23731014	23731545	LINE|L1|L1MC5	+	chr2	23689628	23691161	STRG.32242.1	-	23689628,23690930	23690829,23691161	0.875000
testis_male_adult_54_years	chr7	15547679	15547721	15547708	-	High_confidence	4	4	18	0.668376	4.087463	chr7	15547309	15553333	LINE|L1|L1PA2	+	chr7	15394112	15547813	STRG.159325.3	-	15394112,15418557,15431004,15544771,15547563	15394179,15418653,15431108,15544923,15547813	0.555556
testis_male_adult_54_years	chr17	285546	285547	285546	-	RAMPAGE_only	11	12	12	0.445584	3.277613	chr17	285539	285735	DNA|hAT-Charlie|MER3	-	chr17	219696	306681	RPH3AL|ENST00000570954.1	-	219696,247110,281767,306415	219736,247285,281854,306681	0.583333
testis_male_adult_54_years	chr16	76579486	76579528	76579527	+	High_confidence	10	12	33	1.225356	4.760648	chr16	76579332	76579691	LTR|ERV1|MER57C2	+	chr16	76579484	76651597	STRG.309919.8	+	76579484,76635496,76650620	76579816,76635623,76651597	0.636364
testis_male_adult_54_years	chr2	161254638	161254668	161254638	-	High_confidence	9	9	20	0.742640	4.321928	chr2	161254585	161254861	LINE|L1|L1MB3	+	chr2	161223257	161254643	LOC101929512|NR_110593.1	-	161223257,161248523,161250995,161254584	161223483,161248585,161251222,161254643	0.600000
testis_male_adult_54_years	chr1	6200609	6200658	6200657	-	High_confidence	7	8	23	0.854036	3.708132	chr1	6200565	6201073	LTR|ERVL|LTR50	+	chr1	6186614	6200842	RPL22|ENST00000497965.5	-	6186614,6192929,6197651,6200488	6186816,6193054,6197756,6200842	1.000000
testis_male_adult_54_years	chr7	120227421	120227422	120227421	-	High_confidence	19	23	26	0.965432	4.563856	chr7	120226998	120227392	LTR|ERVL-MaLR|MLT1B	-	chr7	120216840	120227405	STRG.172648.1	-	120216840,120226361,120227078	120217067,120226489,120227405	0.730769
testis_male_adult_54_years	chr7	47816876	47816877	47816876	-	RAMPAGE_only	6	7	7	0.259924	2.584963	chr7	47816857	47816955	DNA|hAT-Blackjack|MER63A	+	chr7	47809409	47813237	PKD1L1|ENST00000433506.1	-	47809409,47811816,47813120	47809577,47812051,47813237	0.571429
testis_male_adult_54_years	chr5	154038408	154038413	154038408	-	High_confidence	15	15	26	0.965432	4.085055	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	153991702	154038866	FAM114A2|ENST00000522858.5	-	153991702,153994918,153997802,154002250,154002846,154011240,154026398,154027175,154028148,154029488,154033790,154034277,154034743,154038292	153993110,153994972,153997875,154002390,154002969,154011320,154026522,154027334,154028283,154029580,154033883,154034377,154034967,154038866	1.000000
testis_male_adult_54_years	chr15	45529765	45529787	45529780	+	RAMPAGE_only	9	9	30	1.113960	4.556088	chr15	45529571	45530096	LTR|ERVL-MaLR|MLT1F1	+	chr15	45511150	45556102	HMGN2P46|ENST00000396644.6	+	45511150,45513697,45536084,45555489	45511205,45513963,45536209,45556102	0.500000
testis_male_adult_54_years	chr3	45030015	45030045	45030029	-	RAMPAGE_only	9	9	30	1.113960	4.720050	chr3	45029937	45030150	SINE|MIR|MIRb	+	chr3	45024252	45025068	STRG.66976.1	-	45024252	45025068	0.500000
testis_male_adult_54_years	chr12	10001952	10001971	10001957	-	High_confidence	16	16	71	2.636373	4.857239	chr12	10001881	10002180	SINE|Alu|AluYm1	-	chr12	10001274	10001809	STRG.246654.1	-	10001274	10001809	0.549296
testis_male_adult_54_years	chr11	47569867	47569870	47569869	+	RAMPAGE_only	3	5	8	0.297056	2.521641	chr11	47569909	47570209	SINE|Alu|AluJb	+	chr11	47565897	47573461	PTPMT1|ENST00000527079.2	+	47565897,47569699,47571470	47565986,47569891,47573461	0.875000
testis_male_adult_54_years	chr2	185167094	185167107	185167097	-	RAMPAGE_only	6	6	20	0.742640	3.997670	chr2	185166976	185167223	LINE|L1|L1MEf	+	chr2	185137190	185137540	STRG.53087.1	-	185137190	185137540	0.650000
testis_male_adult_54_years	chr1	179836488	179836524	179836488	-	High_confidence	34	34	92	3.416145	4.046505	chr1	179836072	179837495	LTR|ERV1|LTR12C	-	chr1	179835827	179836486	STRG.20268.1	-	179835827	179836486	0.923913
testis_male_adult_54_years	chr13	49495740	49495741	49495740	+	High_confidence	6	6	9	0.334188	3.000000	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495664	49518060	PHF11|ENST00000481509.5	+	49495664,49513058,49518017	49496095,49513166,49518060	0.777778
testis_male_adult_54_years	chr11	28091883	28091884	28091883	-	RAMPAGE_only	4	4	7	0.259924	2.584963	chr11	28091813	28092114	SINE|Alu|AluY	-	chr11	28076481	28097887	KIF18A|ENST00000533466.1	-	28076481,28077006,28082855,28083168,28084631,28088523,28090616,28091408,28094642,28097622	28076932,28077169,28082968,28083243,28084808,28088721,28090727,28091513,28094800,28097887	0.571429
testis_male_adult_54_years	chr14	22821371	22821376	22821371	-	RAMPAGE_only	17	18	29	1.076828	4.423252	chr14	22821278	22821399	LINE|L2|L2a	+	chr14	22773221	22819811	SLC7A7|NM_001126106.2	-	22773221,22773932,22774353,22775443,22775832,22776194,22778792,22779925,22812899,22815319,22819637	22773716,22774116,22774503,22775540,22775936,22776318,22778937,22780051,22813440,22815451,22819811	0.517241
testis_male_adult_54_years	chr11	77356559	77356565	77356560	-	High_confidence	2	4	9	0.334188	3.000000	chr11	77356428	77356670	SINE|MIR|MIR	+	chr11	77349247	77356298	PAK1|ENST00000530358.1	-	77349247,77353535,77355667	77349287,77353599,77356298	0.666667
testis_male_adult_54_years	chr16	9108737	9108787	9108786	+	RAMPAGE_only	15	15	47	1.745205	4.360143	chr16	9108771	9108857	SINE|MIR|MIRb	+	chr16	9104847	9113181	AC087190.3|ENST00000574616.2	+	9104847	9113181	1.000000
testis_male_adult_54_years	chr6	140148383	140148438	140148437	-	High_confidence	15	17	49	1.819469	5.152569	chr6	140147768	140148683	LTR|ERV1|LTR12C	-	chr6	140143863	140148435	STRG.153234.1	-	140143863,140148094	140143970,140148435	0.734694
testis_male_adult_54_years	chr17	78901872	78901908	78901872	-	High_confidence	2	2	9	0.334188	3.169925	chr17	78901745	78901955	LINE|CR1|L3	+	chr17	78890637	78901828	CEP295NL|ENST00000619342.1	-	78890637,78901784	78892459,78901828	0.555556
testis_male_adult_54_years	chr5	145815570	145815576	145815575	-	RAMPAGE_only	7	7	15	0.556980	3.773557	chr5	145815401	145816076	LINE|L1|L1MB7	-	chr5	145703903	145796531	PRELID2|ENST00000510594.1	-	145703903,145764930,145796441	145704295,145765000,145796531	0.533333
testis_male_adult_54_years	chr4	8436023	8436026	8436025	-	RAMPAGE_only	14	27	31	1.151092	4.513153	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.677419
testis_male_adult_54_years	chr9	115290734	115290800	115290734	+	High_confidence	9	13	61	2.265053	3.838891	chr9	115290669	115290906	LTR|ERVL-MaLR|MLT1J1	+	chr9	115290796	115314480	DEC1|ENST00000477580.5	+	115290796,115291781,115305905,115312211	115290937,115291936,115305996,115314480	0.983607
testis_male_adult_54_years	chr11	112737650	112737662	112737650	-	High_confidence	4	4	14	0.519848	2.931209	chr11	112737374	112737636	LINE|L2|L2b	-	chr11	112734834	112737580	STRG.242471.1	-	112734834,112737441	112735351,112737580	0.785714
testis_male_adult_54_years	chr11	17208507	17208541	17208533	+	RAMPAGE_only	2	4	12	0.445584	3.459432	chr11	17208523	17208605	SINE|MIR|MIRc	-	chr11	17260339	17349980	NUCB2|ENST00000646648.1	+	17260339,17269184,17276007,17282788,17295323,17296103,17301743,17309571,17310824,17311184,17311871,17312027,17315385,17330126,17330901,17337347,17349344	17260501,17269331,17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17337534,17349980	0.666667
testis_male_adult_54_years	chr12	113215304	113215305	113215304	-	RAMPAGE_only	5	6	7	0.259924	2.807355	chr12	113215191	113215364	SINE|MIR|MIRb	+	chr12	113200044	113221027	IQCD|ENST00000546692.1	-	113200044,113207437,113220996	113200813,113208509,113221027	0.857143
testis_male_adult_54_years	chr12	95442594	95442610	95442600	+	RAMPAGE_only	5	5	20	0.742640	4.142664	chr12	95442629	95442902	SINE|Alu|AluSx1	+	chr12	95473519	95514342	METAP2|ENST00000535095.5	+	95473519,95476070,95483214,95485878,95494055,95494956,95496003,95504064,95512800,95513651	95474330,95476178,95483280,95485981,95494217,95495138,95496098,95504161,95512916,95514342	0.900000
testis_male_adult_54_years	chr21	9757269	9757312	9757311	+	High_confidence	38	38	172	6.386706	6.423128	chr21	9757163	9757572	LTR|ERVL|MER70A	-	chr21	9757275	9757958	STRG.352278.2	+	9757275	9757958	0.662791
testis_male_adult_54_years	chr6	118574080	118574091	118574080	-	High_confidence	1	1	7	0.259924	2.584963	chr6	118574043	118574503	LTR|ERV1|LTR10B2	+	chr6	118565558	118574068	CEP85L|ENST00000472713.1	-	118565558,118573990	118566316,118574068	0.714286
testis_male_adult_54_years	chr3	29057582	29057594	29057582	-	High_confidence	14	15	29	1.076828	4.582119	chr3	29057265	29058454	LINE|L1|L1PB1	+	chr3	29054437	29057572	STRG.65330.2	-	29054437,29056704,29057361	29055814,29056829,29057572	0.896552
testis_male_adult_54_years	chr3	33838256	33838260	33838256	+	RAMPAGE_only	14	14	24	0.891168	4.061482	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.750000
testis_male_adult_54_years	chr13	62212061	62212064	62212061	-	High_confidence	34	34	73	2.710637	5.490927	chr13	62211749	62212615	LTR|ERV1|LTR12D	-	chr13	62211241	62212079	STRG.269989.1	-	62211241	62212079	0.986301
testis_male_adult_54_years	chrX	103711427	103711444	103711443	+	High_confidence	4	4	10	0.371320	2.721928	chrX	103711202	103711512	SINE|Alu|AluY	+	chrX	103710908	103714032	TMEM31|NM_182541.2	+	103710908,103712235,103713593	103711076,103712360,103714032	1.000000
testis_male_adult_54_years	chr20	36676860	36676861	36676860	-	RAMPAGE_only	6	6	8	0.297056	2.500000	chr20	36676802	36677908	LTR|ERV1|MER52C	+	chr20	36651770	36700675	STRG.344969.4	-	36651770,36656359,36656496,36660336,36665045,36665235,36666288,36671340,36680815,36682517,36684412,36687491,36688678,36700434	36653701,36656411,36656532,36660384,36665097,36665301,36666392,36671397,36680902,36682578,36684475,36687612,36688784,36700675	1.000000
testis_male_adult_54_years	chr1	1989133	1989220	1989219	-	High_confidence	8	8	29	1.076828	4.450212	chr1	1989142	1989459	LTR|ERVL|LTR18B	+	chr1	1983670	1989838	STRG.42.8	-	1983670,1986936,1988511,1988888,1989266	1985490,1987035,1988655,1988973,1989838	0.931034
testis_male_adult_54_years	chr16	17392241	17392251	17392250	-	RAMPAGE_only	12	13	20	0.742640	4.221928	chr16	17392055	17392565	LINE|L2|L2b	+	chr16	17101768	17470881	XYLT1|ENST00000261381.6	-	17101768,17117645,17127665,17134472,17138354,17141152,17158828,17198211,17200481,17258987,17358011,17470433	17109017,17117979,17127861,17134735,17138531,17141369,17158909,17198414,17200654,17259498,17358050,17470881	0.800000
testis_male_adult_54_years	chr17	77178777	77178799	77178795	+	RAMPAGE_only	9	9	27	1.002564	4.286790	chr17	77178526	77178851	DNA|hAT-Charlie|MER1B	-	chr17	77181036	77194733	SEC14L1|ENST00000588616.6	+	77181036,77190802,77191180,77193420,77194676	77181146,77190952,77191312,77193549,77194733	0.851852
testis_male_adult_54_years	chr14	90198743	90198764	90198763	+	RAMPAGE_only	6	10	32	1.188224	4.615061	chr14	90198321	90198922	LTR|ERV1|MER50	+	chr14	90256494	90275429	PSMC1|ENST00000261303.12	+	90256494,90259159,90260114,90263317,90263661,90264040,90265069,90268223,90269396,90270197,90272272	90256600,90259213,90260211,90263442,90263847,90264169,90265166,90268413,90269548,90270352,90275429	0.812500
testis_male_adult_54_years	chr12	3871541	3871592	3871591	+	High_confidence	18	18	45	1.670940	5.141250	chr12	3871291	3871613	DNA|TcMar-Tigger|Tigger3a	+	chr12	3871583	3873036	AC005842.1|ENST00000649371.1	+	3871583,3872381	3871956,3873036	0.711111
testis_male_adult_54_years	chr13	41882234	41882260	41882259	-	High_confidence	4	4	24	0.891168	4.277613	chr13	41881380	41882843	Retroposon|SVA|SVA_D	-	chr13	41719336	41882707	STRG.267046.3	-	41719336,41721369,41727193,41729541,41732079,41761127,41777984,41783794,41787436,41811224,41816697,41819217,41830528,41833370,41865735,41865901,41868345,41869059,41881999	41719742,41721575,41727313,41729677,41732155,41761204,41778056,41783901,41787543,41811340,41816775,41819386,41830642,41833531,41865813,41866036,41868477,41869189,41882707	0.833333
testis_male_adult_54_years	chr16	21312261	21312262	21312261	-	High_confidence	81	84	85	3.156221	4.673830	chr16	21311846	21313345	LTR|ERV1|LTR12C	-	chr16	21311844	21312346	STRG.305091.1	-	21311844	21312346	0.917647
testis_male_adult_54_years	chr3	188569114	188569117	188569114	+	High_confidence	6	6	10	0.371320	2.846439	chr3	188568967	188569135	LINE|L2|L2a	-	chr3	188569030	188760201	LPP|ENST00000471917.1	+	188569030,188609160,188708266,188760112	188569128,188609844,188708393,188760201	0.500000
testis_male_adult_54_years	chr11	16408855	16408868	16408855	-	High_confidence	82	83	128	4.752897	6.182459	chr11	16408706	16408831	SINE|Alu|FLAM_A	-	chr11	15966448	16408884	SOX6|NM_001145811.1	-	15966448,15986203,15988996,16014941,16046513,16049712,16055751,16097608,16111802,16183885,16186782,16234581,16318445,16341011,16408697	15973112,15986420,15989230,16015050,16046701,16049938,16055901,16097688,16111923,16183954,16186955,16234671,16318653,16341252,16408884	0.804688
testis_male_adult_54_years	chr12	30400637	30400660	30400659	+	High_confidence	42	42	81	3.007693	5.169123	chr12	30400699	30402420	LTR|ERV1|LOR1-int	+	chr12	30400599	30502329	STRG.250660.1	+	30400599,30484181,30486156,30501825	30400758,30484260,30486459,30502329	0.703704
testis_male_adult_54_years	chr10	73374334	73374357	73374356	+	RAMPAGE_only	4	4	11	0.408452	3.095795	chr10	73374348	73374711	LINE|L1|L1MA9	+	chr10	73381432	73383496	AL512656.1|ENST00000427492.1	+	73381432,73383240	73381577,73383496	0.636364
testis_male_adult_54_years	chr1	51577168	51577192	51577168	+	High_confidence	5	6	17	0.631244	4.087463	chr1	51576908	51577311	LTR|ERVL-MaLR|MSTB	+	chr1	51577181	51579550	STRG.6849.1	+	51577181	51579550	0.588235
testis_male_adult_54_years	chr18	63309836	63309853	63309836	-	RAMPAGE_only	3	3	7	0.259924	2.584963	chr18	63309716	63309845	DNA|TcMar-Tigger|MER2B	-	chr18	63304444	63313479	STRG.328777.1	-	63304444	63313479	0.857143
testis_male_adult_54_years	chr6	75712787	75712788	75712787	+	RAMPAGE_only	5	5	8	0.297056	2.807355	chr6	75712822	75713106	SINE|Alu|AluJo	+	chr6	75666870	75715877	SENP6|ENST00000503501.1	+	75666870,75670552,75675434,75675859,75677029,75678582,75678810,75695803,75697424,75709526,75711327,75713512,75713674,75715384	75666941,75670720,75675468,75676054,75677256,75678692,75678927,75695923,75697517,75709630,75711416,75713581,75713825,75715877	0.875000
testis_male_adult_54_years	chr3	197913233	197913300	197913295	-	High_confidence	128	140	391	14.518616	6.378906	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.953964
testis_male_adult_54_years	chr1	229892007	229892032	229892022	-	High_confidence	55	90	243	9.023079	6.833179	chr1	229891943	229892201	LINE|L1|L1MEc	-	chr1	229875549	229892047	STRG.26497.1	-	229875549,229885086,229885539,229891965	229875721,229885174,229885818,229892047	0.637860
testis_male_adult_54_years	chr11	68773830	68773862	68773861	-	High_confidence	7	8	34	1.262488	5.028639	chr11	68773621	68774291	LTR|ERV1|MER50	+	chr11	68762626	68773887	CPT1A|ENST00000537756.2	-	68762626,68773264,68773602	68762761,68773429,68773887	0.617647
testis_male_adult_54_years	chr5	172776478	172776492	172776491	+	High_confidence	68	72	156	5.792594	6.399413	chr5	172776502	172776579	SINE|MIR|MIR	+	chr5	172776464	172782334	AC022217.3|ENST00000650258.1	+	172776464,172777491,172782071	172776550,172777910,172782334	0.884615
testis_male_adult_54_years	chr9	11065024	11065078	11065033	-	High_confidence	8	8	41	1.522412	4.853056	chr9	11064761	11065329	LTR|ERV1|LTR9A1	+	chr9	11064495	11064891	STRG.197183.1	-	11064495	11064891	0.585366
testis_male_adult_54_years	chr6	45576748	45576800	45576748	-	High_confidence	31	32	111	4.121653	6.309961	chr6	45576627	45576792	SINE|MIR|MIRc	+	chr6	45565799	45576770	STRG.141845.2	-	45565799,45573378,45576026	45567687,45574446,45576770	0.945946
testis_male_adult_54_years	chr17	29599408	29599422	29599421	+	High_confidence	11	12	22	0.816904	4.277613	chr17	29599248	29599564	LINE|L2|L2a	-	chr17	29599411	29608956	ANKRD13B|ENST00000578811.1	+	29599411,29607741,29608194,29608850	29599448,29608110,29608240,29608956	0.590909
testis_male_adult_54_years	chr2	88503986	88503987	88503986	+	High_confidence	694	695	713	26.475124	5.120769	chr2	88502992	88504403	LTR|ERV1|LTR12C	+	chr2	88503972	88523285	STRG.41523.5	+	88503972,88511386	88504894,88523285	0.967742
testis_male_adult_54_years	chr8	34784811	34784823	34784811	+	High_confidence	12	13	19	0.705508	3.947703	chr8	34784701	34785009	SINE|Alu|AluY	-	chr8	34784811	34837969	LINC01288|ENST00000648617.1	+	34784811,34792757,34819271,34837580	34785071,34792965,34819405,34837969	0.789474
testis_male_adult_54_years	chr13	105410805	105410824	105410805	+	High_confidence	2	2	9	0.334188	2.725481	chr13	105410497	105411838	DNA|hAT-Charlie|Charlie1a	+	chr13	105410825	105414218	STRG.275758.1	+	105410825,105414035	105410897,105414218	0.888889
testis_male_adult_54_years	chr4	58724755	58724756	58724755	+	High_confidence	36	36	43	1.596676	4.431353	chr4	58723962	58725172	LTR|ERV1|LTR12C	+	chr4	58724766	58725169	STRG.94949.1	+	58724766	58725169	0.860465
testis_male_adult_54_years	chr10	119926997	119927025	119927024	+	RAMPAGE_only	2	3	7	0.259924	2.807355	chr10	119926879	119927197	SINE|Alu|AluJr4	-	chr10	119929644	119933770	STRG.227043.7	+	119929644,119932132,119933004,119933685	119930431,119932318,119933167,119933770	0.571429
testis_male_adult_54_years	chr1	38213019	38213030	38213029	+	High_confidence	8	11	27	1.002564	4.315824	chr1	38212901	38213118	SINE|MIR|MIR	-	chr1	38212423	38213518	STRG.4613.1	+	38212423,38213008	38212507,38213518	0.814815
testis_male_adult_54_years	chr1	179727726	179727736	179727726	+	High_confidence	6	7	12	0.445584	3.188722	chr1	179727227	179727791	LINE|L2|L2a	-	chr1	179727792	179742697	STRG.20227.3	+	179727792,179728508,179742354	179727845,179730417,179742697	0.750000
testis_male_adult_54_years	chr20	35472698	35472699	35472698	+	RAMPAGE_only	5	5	8	0.297056	2.521641	chr20	35472680	35472757	DNA|hAT-Ac|OldhAT1	-	chr20	35462264	35478063	CEP250|ENST00000425934.5	+	35462264,35463574,35465742,35466038,35466965,35467303,35469889,35472052,35472672,35473373,35473869,35475501,35476448,35477870	35462553,35463631,35465825,35466204,35467072,35467555,35469986,35472151,35472831,35473552,35474052,35475646,35476595,35478063	0.750000
testis_male_adult_54_years	chr2	227889507	227889540	227889507	+	RAMPAGE_only	12	12	40	1.485280	4.821928	chr2	227889209	227889569	LTR|ERVL-MaLR|MLT1A1	-	chr2	227871641	227924341	STRG.58936.1	+	227871641,227885350,227889275,227889855,227891254,227893794,227898181,227903001,227904928,227906235,227907137,227918779,227921398,227923933	227871729,227885423,227889573,227890000,227891313,227893917,227898281,227903109,227905035,227906338,227907252,227918856,227921561,227924341	0.950000
testis_male_adult_54_years	chrX	48936192	48936228	48936192	-	High_confidence	4	4	10	0.371320	3.169925	chrX	48936089	48936210	LINE|L2|L2c	-	chrX	48922942	48936339	STRG.362770.5	-	48922942,48923632,48923850,48925846,48934463,48934710,48934953,48936190	48923295,48923746,48924052,48926050,48934612,48934867,48935018,48936339	0.900000
testis_male_adult_54_years	chr13	105730427	105730428	105730427	+	High_confidence	6	6	7	0.259924	2.584963	chr13	105730231	105730538	LINE|L2|L2	-	chr13	105729500	105731708	LINC00343|ENST00000414368.2	+	105729500,105730314,105731447	105729959,105730458,105731708	0.714286
testis_male_adult_54_years	chr12	8753314	8753324	8753314	+	RAMPAGE_only	5	7	11	0.408452	3.459432	chr12	8753094	8753414	LTR|ERVL-MaLR|MLT1G	-	chr12	8713742	8783085	RIMKLB|ENST00000619374.4	+	8713742,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783085	0.636364
testis_male_adult_54_years	chr20	45792186	45792195	45792188	+	High_confidence	8	14	25	0.928300	4.349649	chr20	45792230	45792444	SINE|MIR|MIR	+	chr20	45792054	45811427	DNTTIP1|ENST00000456939.5	+	45792054,45792676,45793920,45801073,45801401,45801998,45803332,45805145,45805305,45809113,45810884,45811056	45792109,45792747,45794017,45801142,45801458,45802057,45803378,45805204,45805366,45809185,45810940,45811427	0.680000
testis_male_adult_54_years	chr19	37465314	37465319	37465314	-	RAMPAGE_only	6	6	13	0.482716	3.584963	chr19	37464765	37465454	LINE|L2|L2a	+	chr19	37411154	37467229	ZNF569|ENST00000392149.6	-	37411154,37425867,37426251,37444906,37467086	37414419,37425963,37426378,37444964,37467229	0.692308
testis_male_adult_54_years	chr10	116773764	116773783	116773764	-	High_confidence	12	12	26	0.965432	4.220176	chr10	116773710	116773799	LINE|L2|L2c	-	chr10	116769657	116773568	STRG.226610.1	-	116769657,116773551	116770144,116773568	0.653846
testis_male_adult_54_years	chr2	159733901	159733975	159733959	+	High_confidence	17	20	121	4.492973	5.427332	chr2	159733885	159733975	DNA|TcMar-Tigger|Tigger16b	+	chr2	159733964	159767409	MARCH7|ENST00000409591.5	+	159733964,159743060,159745769,159747804,159752401,159759225,159762879,159764625,159767283	159734082,159743253,159745937,159748903,159752571,159759335,159762993,159764674,159767409	0.925620
testis_male_adult_54_years	chr12	71376961	71376984	71376983	-	High_confidence	3	3	6	0.222792	2.584963	chr12	71376674	71377134	LTR|ERV1|LTR12C	+	chr12	71376212	71377143	STRG.255956.1	-	71376212	71377143	0.833333
testis_male_adult_54_years	chr1	233724417	233724468	233724467	+	High_confidence	54	54	161	5.978254	5.767430	chr1	233724069	233724887	LTR|ERV1|LTR12D	+	chr1	233724436	233731208	STRG.27006.1	+	233724436,233730181	233724923,233731208	0.950311
testis_male_adult_54_years	chr7	23206263	23206290	23206277	-	High_confidence	7	7	34	1.262488	4.452820	chr7	23206097	23206300	LINE|L1|L1M4b	+	chr7	23185148	23206395	STRG.160753.1	-	23185148,23205714	23185267,23206395	0.823529
testis_male_adult_54_years	chr12	123390725	123390761	123390760	+	High_confidence	4	4	14	0.519848	3.700440	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.857143
testis_male_adult_54_years	chr9	130501796	130501821	130501796	-	RAMPAGE_only	3	3	15	0.556980	3.640224	chr9	130501782	130501871	LTR|ERVL-MaLR|MLT1O	+	chr9	130490736	130500088	STRG.211351.1	-	130490736,130499946	130492257,130500088	0.533333
testis_male_adult_54_years	chr11	72793445	72793461	72793445	-	High_confidence	1	1	7	0.259924	2.584963	chr11	72793261	72793497	SINE|MIR|MIRb	-	chr11	72755015	72793592	STRG.237269.6	-	72755015,72755700,72757766,72758529,72759233,72780974,72792874	72755070,72755753,72757884,72758633,72759381,72781294,72793592	0.714286
testis_male_adult_54_years	chr5	71840911	71840935	71840934	-	RAMPAGE_only	4	4	13	0.482716	3.392747	chr5	71840773	71841207	LINE|L1|L1MB2	-	chr5	71826981	71828297	STRG.119704.1	-	71826981	71828297	0.538462
testis_male_adult_54_years	chr8	11795578	11795579	11795578	+	High_confidence	1399	1401	1533	56.923373	5.599002	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.947815
testis_male_adult_54_years	chr12	31117975	31117995	31117994	-	High_confidence	5	6	13	0.482716	3.084963	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.846154
testis_male_adult_54_years	chr3	128991561	128991565	128991564	-	High_confidence	5	5	13	0.482716	3.700440	chr3	128991390	128991788	LTR|ERV1|MER48	+	chr3	128970979	128991897	KIAA1257|ENST00000515659.1	-	128970979,128975778,128976978,128978044,128987615,128988727,128991478	128971433,128975903,128977066,128978185,128987829,128988918,128991897	0.923077
testis_male_adult_54_years	chr5	2917807	2917867	2917840	+	High_confidence	27	29	113	4.195917	5.918358	chr5	2917481	2918186	LTR|ERV1|MER50	-	chr5	2917836	2923373	STRG.111501.3	+	2917836,2918673	2917904,2923373	0.955752
testis_male_adult_54_years	chr4	168616752	168616792	168616772	-	High_confidence	30	32	78	2.896297	5.726015	chr4	168616671	168616804	DNA|hAT-Charlie|MER5A	+	chr4	168483508	168616790	STRG.107794.9	-	168483508,168490357,168492665,168530560,168537640,168616540	168483699,168490450,168492885,168530702,168537786,168616790	0.717949
testis_male_adult_54_years	chr1	23015819	23015839	23015838	-	RAMPAGE_only	4	4	11	0.408452	3.121928	chr1	23015482	23016007	LINE|L1|L1MB2	+	chr1	23010833	23014024	TEX46|ENST00000440767.2	-	23010833,23013882	23011200,23014024	0.727273
testis_male_adult_54_years	chr8	110829642	110829700	110829687	+	High_confidence	18	18	94	3.490409	5.201267	chr8	110829646	110830298	LTR|ERV1|LTR9C	-	chr8	110829700	110829983	STRG.192265.1	+	110829700	110829983	0.617021
testis_male_adult_54_years	chr3	48607656	48607681	48607680	-	RAMPAGE_only	14	19	60	2.227921	5.179088	chr3	48607554	48607722	SINE|Alu|AluJo	-	chr3	48599053	48609626	UQCRC1|ENST00000415995.5	-	48599053,48599634,48600062,48600481,48600679,48600974,48601351,48603563,48604232,48604650,48605769,48609546	48599192,48599710,48600151,48600567,48600840,48601118,48601467,48603643,48604431,48604780,48605856,48609626	0.783333
testis_male_adult_54_years	chr14	22909534	22909561	22909560	-	RAMPAGE_only	5	5	11	0.408452	3.459432	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22905157	22919110	STRG.277492.6	-	22905157,22905335,22905605,22906194,22908332,22909482,22911327,22913723,22918998	22905246,22905453,22905659,22906368,22908380,22909595,22911403,22913845,22919110	1.000000
testis_male_adult_54_years	chr16	12271244	12271248	12271244	+	RAMPAGE_only	3	3	8	0.297056	2.521641	chr16	12271105	12271599	LTR|ERVL-MaLR|MLT1F2	-	chr16	12129696	12527397	SNX29|ENST00000564791.5	+	12129696,12199600,12277932,12356162,12398445,12403447,12477718,12524701,12526549	12129758,12199683,12278036,12356279,12398501,12403529,12477859,12524841,12527397	0.750000
testis_male_adult_54_years	chr22	32343041	32343065	32343061	-	RAMPAGE_only	5	5	13	0.482716	3.418296	chr22	32342830	32343021	LINE|CR1|L3	-	chr22	32301863	32355055	STRG.355932.6	-	32301863,32334211,32354846	32327437,32353014,32355055	0.923077
testis_male_adult_54_years	chrX	115647942	115647980	115647972	+	RAMPAGE_only	3	5	13	0.482716	3.022055	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.923077
testis_male_adult_54_years	chr4	31996671	31996680	31996679	-	High_confidence	5	6	15	0.556980	3.664498	chr4	31996206	31997789	LTR|ERV1|LTR12C	+	chr4	31995858	31996764	STRG.92588.1	-	31995858	31996764	0.666667
testis_male_adult_54_years	chr7	128709057	128709097	128709089	+	High_confidence	93	101	467	17.340649	7.216567	chr7	128708844	128709287	LTR|ERVL-MaLR|MLT1J	+	chr7	128709089	128719082	STRG.173487.9	+	128709089,128713922,128716812,128718830	128709207,128714074,128716997,128719082	0.599572
testis_male_adult_54_years	chr2	63183604	63183639	63183638	+	High_confidence	13	20	50	1.856601	5.094102	chr2	63180199	63186886	LINE|L1|L1PB4	-	chr2	63182869	63201771	STRG.38681.1	+	63182869,63196121,63201195	63183716,63197230,63201771	0.980000
testis_male_adult_54_years	chr2	230961065	230961088	230961065	-	High_confidence	5	6	16	0.594112	3.702820	chr2	230960613	230961268	LINE|L1|L1MCb	+	chr2	230909865	230961066	GPR55|ENST00000392039.2	-	230909865,230960774	230911096,230961066	0.812500
testis_male_adult_54_years	chr3	45307661	45307662	45307661	+	High_confidence	81	82	90	3.341881	5.072442	chr3	45306485	45308078	LTR|ERV1|LTR12C	+	chr3	45307674	45310163	STRG.66957.1	+	45307674,45309757	45308475,45310163	0.977778
testis_male_adult_54_years	chr6	4724916	4724933	4724932	-	High_confidence	4	4	8	0.297056	2.807355	chr6	4724469	4725869	LTR|ERV1|LTR12C	-	chr6	4691912	4724897	STRG.135145.1	-	4691912,4697070,4718526,4724410	4693175,4697141,4718594,4724897	0.875000
testis_male_adult_54_years	chrX	119127811	119127818	119127811	-	High_confidence	1476	1688	3247	120.567640	7.697186	chrX	119127624	119127833	LINE|L2|L2a	+	chrX	119076233	119127846	STRG.367773.1	-	119076233,119083014,119085382,119086545,119093666,119096493,119104991,119108336,119109075,119116495,119123581,119127726	119081504,119083120,119085546,119089746,119093775,119096691,119105147,119108471,119109202,119116664,119123652,119127846	0.946720
testis_male_adult_54_years	chr8	98602207	98602247	98602241	-	High_confidence	44	49	108	4.010257	5.180237	chr8	98602199	98602551	LTR|ERVL-MaLR|MLT1A0	+	chr8	98547965	98602255	STK3|ENST00000523159.5	-	98547965,98579663,98596031,98602178	98548161,98579789,98596169,98602255	0.796296
testis_male_adult_54_years	chr4	28402876	28402951	28402950	-	High_confidence	17	18	50	1.856601	4.918563	chr4	28402359	28403146	LTR|ERV1|LTR1A2	-	chr4	28381496	28402864	AC109588.1|ENST00000515720.1	-	28381496,28393203,28394195,28402651	28381911,28393350,28394300,28402864	0.840000
testis_male_adult_54_years	chr6	113184395	113184429	113184420	-	High_confidence	11	11	56	2.079393	5.319521	chr6	113184368	113184825	LTR|ERVL-MaLR|MLT1B	-	chr6	113182691	113184474	STRG.149772.2	-	113182691	113184474	0.946429
testis_male_adult_54_years	chr14	44798601	44798651	44798601	-	High_confidence	13	13	33	1.225356	4.687500	chr14	44798404	44800073	LTR|ERV1|LTR12C	+	chr14	44763287	44798837	STRG.281268.1	-	44763287,44766218,44767994,44797929,44798388	44765635,44766334,44768129,44798012,44798837	0.727273
testis_male_adult_54_years	chr22	36239960	36240009	36239960	-	High_confidence	3	3	23	0.854036	4.011365	chr22	36239876	36239982	SINE|MIR|MIRb	+	chr22	36226208	36239954	APOL2|NM_145637.2	-	36226208,36231339,36233152,36233401,36239440,36239731	36228280,36231466,36233241,36233455,36239561,36239954	0.739130
testis_male_adult_54_years	chr3	44765455	44765491	44765455	-	RAMPAGE_only	12	12	21	0.779772	4.201841	chr3	44765335	44765851	LINE|L1|L1M4b	-	chr3	44748743	44761681	KIAA1143|NM_001320334.1	-	44748743,44754223,44761494	44753607,44754368,44761681	0.857143
testis_male_adult_54_years	chr14	72421993	72422036	72421993	-	High_confidence	9	9	31	1.151092	4.760648	chr14	72421935	72422277	LTR|ERVL-MaLR|THE1B	+	chr14	72421227	72422017	STRG.285382.3	-	72421227	72422017	0.741935
testis_male_adult_54_years	chr14	44912624	44912659	44912628	-	High_confidence	58	62	190	7.055082	5.705692	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44897263	44912649	STRG.281295.5	-	44897263,44911756,44911977	44899313,44911860,44912649	0.852632
testis_male_adult_54_years	chr12	10115527	10115542	10115541	-	RAMPAGE_only	4	4	9	0.334188	2.750000	chr12	10115443	10115830	LINE|L2|L2a	-	chr12	10069553	10099065	CLEC1A|NM_016511.3	-	10069553,10073292,10075503,10081236,10089123,10098807	10071513,10073411,10075655,10081413,10089222,10099065	0.555556
testis_male_adult_54_years	chr15	90826418	90826425	90826424	+	High_confidence	39	43	90	3.341881	5.161313	chr15	90825337	90826830	LTR|ERV1|LTR12C	+	chr15	90826399	90828649	STRG.299363.1	+	90826399	90828649	1.000000
testis_male_adult_54_years	chr11	58577979	58577990	58577979	+	RAMPAGE_only	2	2	7	0.259924	2.521641	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58579110	58621042	ZFP91|ENST00000316059.6	+	58579110,58584855,58609829,58610297,58610949,58611603,58612277,58612761,58614228,58616715,58617195	58579622,58584884,58610039,58610334,58611054,58611738,58612328,58612840,58614343,58616815,58621042	0.857143
testis_male_adult_54_years	chr15	33128593	33128606	33128593	-	High_confidence	3	3	10	0.371320	3.121928	chr15	33128552	33129144	LTR|ERV1|LTR12_	-	chr15	32969069	33128844	STRG.291720.4	-	32969069,33008013,33064956,33088798,33092132,33128549	32969477,33008075,33065074,33088974,33092203,33128844	0.900000
testis_male_adult_54_years	chr9	66164573	66164574	66164573	-	High_confidence	6	6	6	0.222792	2.584963	chr9	66164559	66164946	LTR|ERV1|LOR1b	-	chr9	66159953	66164904	AL513478.2|ENST00000610400.1	-	66159953,66162050,66162812,66164294,66164565	66160229,66162202,66162887,66164440,66164904	1.000000
testis_male_adult_54_years	chr17	62903137	62903149	62903137	+	High_confidence	33	35	93	3.453277	5.272467	chr17	62902903	62903165	LINE|L2|L2c	+	chr17	62903140	62903596	STRG.320873.1	+	62903140	62903596	0.709677
testis_male_adult_54_years	chr15	77285160	77285240	77285160	-	RAMPAGE_only	6	6	21	0.779772	3.844233	chr15	77285149	77285320	SINE|MIR|MIR	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.523810
testis_male_adult_54_years	chr14	90455134	90455161	90455140	-	High_confidence	27	27	107	3.973125	5.880293	chr14	90454962	90455148	SINE|MIR|MIRb	-	chr14	90452831	90455117	STRG.287900.2	-	90452831,90454750,90455096	90454074,90454904,90455117	0.850467
testis_male_adult_54_years	chr9	93095409	93095417	93095416	-	High_confidence	6	12	21	0.779772	4.037401	chr9	93095350	93095421	SINE|MIR|MIRc	+	chr9	93091496	93095529	STRG.206601.1	-	93091496,93091991,93093329,93094570,93095367	93091699,93092093,93093514,93095014,93095529	0.857143
testis_male_adult_54_years	chr22	22507106	22507107	22507106	+	RAMPAGE_only	14	14	18	0.668376	4.169925	chr22	22506858	22507363	LTR|ERVL-MaLR|MLT1F	+	chr22	22523054	22523712	STRG.354736.1	+	22523054	22523712	0.833333
testis_male_adult_54_years	chr2	132134495	132134517	132134516	-	RAMPAGE_only	6	7	14	0.519848	3.180833	chr2	132134443	132134755	SINE|Alu|AluY	-	chr2	132132855	132139429	AC098826.2|ENST00000452011.1	-	132132855,132134349,132134765,132139119	132133038,132134439,132134833,132139429	0.785714
testis_male_adult_54_years	chr7	47973343	47973372	47973357	-	RAMPAGE_only	20	21	52	1.930865	5.142630	chr7	47973277	47973434	DNA|hAT-Charlie|MER5A1	+	chr7	47963287	47979543	HUS1|ENST00000258774.9	-	47963287,47967805,47969218,47975612,47976729,47978416,47978688,47979467	47965438,47967925,47969318,47975687,47976837,47978593,47978816,47979543	0.846154
testis_male_adult_54_years	chr1	84682306	84682307	84682306	-	RAMPAGE_only	5	6	8	0.297056	2.521641	chr1	84682253	84682436	SINE|MIR|MIR3	+	chr1	84650370	84690289	STRG.11404.4	-	84650370,84651882,84655831,84656347,84658317,84662197,84662454,84664416,84666121,84669680,84670645,84671176,84680337,84690153	84650527,84651997,84656005,84656484,84658468,84662375,84662530,84664552,84666232,84669893,84670815,84671308,84680387,84690289	0.875000
testis_male_adult_54_years	chr9	98007625	98007626	98007625	+	RAMPAGE_only	8	8	8	0.297056	2.750000	chr9	98007012	98008959	DNA|hAT-Charlie|Charlie3	+	chr9	97983360	98015943	ANP32B|ENST00000339399.4	+	97983360,97994630,97998555,98004963,98011270,98012420,98015363	97983609,97994780,97998678,98005153,98011389,98012472,98015943	0.750000
testis_male_adult_54_years	chr17	67224073	67224089	67224088	-	RAMPAGE_only	9	10	26	0.965432	4.440636	chr17	67223950	67224506	LTR|ERVL-MaLR|MLT1K	+	chr17	67077928	67239468	HELZ|ENST00000579953.5	-	67077928,67086828,67107168,67108491,67109115,67114323,67120404,67122969,67123962,67128494,67135969,67137930,67145742,67148568,67149866,67151045,67160260,67160896,67166477,67167462,67178658,67188318,67189588,67190156,67193966,67195418,67201128,67203318,67215898,67218594,67239432	67078586,67087081,67107685,67108726,67109686,67114403,67120612,67123160,67124014,67128855,67136198,67138114,67145890,67148714,67149985,67151224,67160365,67161076,67166608,67167796,67178926,67188616,67189696,67190355,67194042,67195470,67201185,67203443,67215935,67218822,67239468	0.923077
testis_male_adult_54_years	chr8	143709129	143709155	143709154	+	RAMPAGE_only	4	5	13	0.482716	2.855389	chr8	143709007	143709573	LTR|ERV1|LTR26	+	chr8	143708050	143713898	LOC101928160|NR_134306.1	+	143708050,143709252,143710747,143712083,143712629,143713017	143708136,143709308,143710815,143712102,143712807,143713898	0.615385
testis_male_adult_54_years	chr13	32490119	32490144	32490136	-	High_confidence	26	42	106	3.935993	5.385721	chr13	32489987	32490173	LINE|L2|L2a	+	chr13	32432786	32490140	N4BP2L2|ENST00000503296.6	-	32432786,32436360,32438651,32442387,32477886,32480589,32490091	32432972,32436405,32438737,32444126,32478048,32480637,32490140	0.858491
testis_male_adult_54_years	chr8	34124518	34124519	34124518	+	RAMPAGE_only	14	14	14	0.519848	3.378783	chr8	34124279	34124881	LINE|L1|L1MD3	-	chr8	34174668	34184855	STRG.182519.1	+	34174668,34182094,34184486	34175013,34182211,34184855	0.857143
testis_male_adult_54_years	chr13	45377175	45377200	45377199	+	RAMPAGE_only	3	4	6	0.222792	2.584963	chr13	45376606	45377218	LTR|ERV1|HERVE-int	-	chr13	45378529	45390879	TPT1-AS1|ENST00000520585.5	+	45378529,45379194,45379898,45383090,45383759,45389734,45390757	45378671,45379335,45380001,45383235,45383838,45389820,45390879	0.833333
testis_male_adult_54_years	chr9	33749404	33749442	33749404	-	High_confidence	23	23	80	2.970561	5.788545	chr9	33748869	33749969	LTR|ERV1|LTR12D	-	chr9	33731942	33749421	STRG.201501.2	-	33731942,33738287,33748766	33734119,33738416,33749421	0.900000
testis_male_adult_54_years	chr8	6044609	6044610	6044609	-	High_confidence	20	21	22	0.816904	3.608695	chr8	6044194	6045582	LTR|ERV1|LTR12C	-	chr8	6044250	6044620	STRG.178951.1	-	6044250	6044620	0.772727
testis_male_adult_54_years	chr6	14003210	14003211	14003210	+	High_confidence	10	10	10	0.371320	3.121928	chr6	14002253	14003643	LTR|ERV1|LTR12C	+	chr6	14003215	14006871	STRG.136425.2	+	14003215,14006576	14003607,14006871	0.500000
testis_male_adult_54_years	chr3	108165454	108165481	108165465	-	RAMPAGE_only	4	4	16	0.594112	3.773557	chr3	108165378	108165542	DNA|hAT-Ac|OldhAT1	+	chr3	108160811	108222570	IFT57|NM_018010.3	-	108160811,108163662,108165430,108166853,108167792,108191520,108206627,108213930,108218534,108219409,108222110	108162655,108163729,108165493,108166985,108167864,108191643,108206696,108214021,108218653,108219572,108222570	0.875000
testis_male_adult_54_years	chr15	31507840	31507871	31507866	+	High_confidence	17	17	45	1.670940	4.472424	chr15	31507443	31507902	LTR|ERV1|LTR12F	-	chr15	31508100	31508804	STRG.291550.1	+	31508100	31508804	0.777778
testis_male_adult_54_years	chr20	32359507	32359519	32359507	+	High_confidence	4	5	11	0.408452	2.921928	chr20	32359379	32359561	DNA|hAT-Charlie|MER5A	-	chr20	32359564	32372553	ASXL1|ENST00000375689.5	+	32359564,32366383,32367726,32369014,32372163	32359791,32366466,32367729,32369123,32372553	0.909091
testis_male_adult_54_years	chr2	95824574	95824595	95824574	-	RAMPAGE_only	4	4	13	0.482716	3.418296	chr2	95824349	95826979	LINE|L1|L1PA10	-	chr2	95807051	95826981	LINC00342|NR_103734.1	-	95807051,95814049,95824200	95807302,95814145,95826981	0.846154
testis_male_adult_54_years	chr17	18419966	18419970	18419969	+	High_confidence	19	27	44	1.633808	5.154222	chr17	18419957	18420357	LINE|L1|L1PB4	-	chr17	18419967	18425097	KRT17P5|ENST00000444070.3	+	18419967,18420332,18422180,18423312,18423656,18424488,18424793	18420183,18421016,18423064,18423549,18423734,18424637,18425097	0.840909
testis_male_adult_54_years	chr11	321249	321258	321249	-	High_confidence	5	5	12	0.445584	3.027169	chr11	321227	321340	SINE|Alu|AluY	+	chr11	319772	321340	IFITM3|ENST00000526811.4	-	319772,320564,321223	319990,320772,321340	0.666667
testis_male_adult_54_years	chr12	10215127	10215139	10215138	+	RAMPAGE_only	13	13	41	1.522412	4.562815	chr12	10215098	10215229	SINE|MIR|MIR3	+	chr12	10213439	10223110	GABARAPL1|ENST00000539170.5	+	10213439,10218062,10220439,10221786	10213617,10218141,10220558,10223110	0.707317
testis_male_adult_54_years	chr3	43417289	43417317	43417289	-	RAMPAGE_only	5	5	24	0.891168	3.914866	chr3	43417045	43417666	LTR|ERV1|LTR9	+	chr3	43366642	43419568	STRG.66704.11	-	43366642,43417231	43366974,43419568	0.583333
testis_male_adult_54_years	chr7	45039258	45039280	45039279	-	High_confidence	3	3	6	0.222792	2.584963	chr7	45039197	45039744	LINE|L1|HAL1	+	chr7	45037879	45038287	STRG.163463.1	-	45037879	45038287	0.666667
testis_male_adult_54_years	chr3	129439736	129439774	129439736	-	High_confidence	2	2	9	0.334188	2.750000	chr3	129439636	129439758	SINE|MIR|MIR3	-	chr3	129433858	129439940	MBD4|ENST00000509587.1	-	129433858,129434061,129437719,129439729	129433984,129434136,129437950,129439940	0.555556
testis_male_adult_54_years	chr1	233738931	233738938	233738931	-	High_confidence	8	8	18	0.668376	3.947703	chr1	233738886	233739304	LTR|ERV1|MER61B	+	chr1	233738458	233738946	STRG.27015.1	-	233738458	233738946	0.555556
testis_male_adult_54_years	chr5	73078270	73078287	73078286	+	RAMPAGE_only	4	5	9	0.334188	2.750000	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	73080632	73090522	STRG.119261.5	+	73080632,73082760,73087588	73081982,73082825,73090522	0.888889
testis_male_adult_54_years	chr12	70468078	70468092	70468091	+	High_confidence	17	17	49	1.819469	5.006328	chr12	70467961	70468294	LTR|ERV1|MER61A	+	chr12	70468109	70470124	STRG.255691.1	+	70468109	70470124	0.755102
testis_male_adult_54_years	chr22	21001585	21001646	21001645	-	High_confidence	4	5	15	0.556980	3.807355	chr22	21001557	21001648	SINE|MIR|MIR	-	chr22	20999103	21001742	THAP7|ENST00000498406.1	-	20999103,21000646,21001255	21000432,21000787,21001742	0.866667
testis_male_adult_54_years	chr11	85878438	85878454	85878453	+	RAMPAGE_only	4	4	9	0.334188	2.750000	chr11	85878098	85879445	LINE|L1|L1MD1	-	chr11	85873230	85919583	STRG.239569.3	+	85873230,85882512,85886199,85895292,85898946,85911280,85915418,85916030,85919348	85873295,85882675,85886367,85895384,85899015,85911402,85915498,85916233,85919583	0.777778
testis_male_adult_54_years	chr17	59619874	59619923	59619894	+	High_confidence	871	968	2439	90.564975	6.456340	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.936859
testis_male_adult_54_years	chr12	27704374	27704432	27704374	-	RAMPAGE_only	6	6	37	1.373884	5.047291	chr12	27704019	27704605	DNA|TcMar-Tigger|Tigger3c	-	chr12	27696387	27710770	AC009509.1|ENST00000536317.5	-	27696387,27703460,27704737,27710598	27696978,27703620,27704924,27710770	0.621622
testis_male_adult_54_years	chr17	77127872	77127877	77127872	+	High_confidence	9	9	16	0.594112	3.702820	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.562500
testis_male_adult_54_years	chr2	33891093	33891104	33891093	+	RAMPAGE_only	4	4	14	0.519848	3.664498	chr2	33890751	33891286	LTR|ERV1|LTR12F	+	chr2	33706907	34061047	LINC01320|ENST00000442026.1	+	33706907,33855687,33886371,33926839,33944427,34060749,34061018	33706953,33855753,33886474,33926968,33944553,34060927,34061047	0.714286
testis_male_adult_54_years	chr16	61982285	61982293	61982287	-	High_confidence	12	14	28	1.039696	4.021641	chr16	61982221	61982517	SINE|Alu|AluYf1	-	chr16	61857177	61981957	STRG.307515.1	-	61857177,61901178,61980938,61981892	61857238,61901473,61980989,61981957	0.750000
testis_male_adult_54_years	chr2	102112925	102112926	102112925	+	RAMPAGE_only	5	5	8	0.297056	2.807355	chr2	102112771	102113137	LTR|ERVL-MaLR|MLT1A0	+	chr2	102104573	102179874	IL1R1|NM_001320980.1	+	102104573,102153940,102157718,102164773,102165114,102166112,102168597,102171800,102172686,102174586,102175477,102176352	102104872,102154017,102157785,102165008,102165304,102166281,102168663,102171918,102172838,102174730,102175645,102179874	0.625000
testis_male_adult_54_years	chr1	149747742	149747787	149747764	-	High_confidence	5	5	38	1.411016	4.760067	chr1	149747571	149747728	LINE|L2|L2	-	chr1	149734010	149747777	AC243772.3|ENST00000636086.1	-	149734010,149747125,149747693	149734382,149747437,149747777	0.578947
testis_male_adult_54_years	chr6	69718667	69718700	69718667	-	RAMPAGE_only	3	3	14	0.519848	3.700440	chr6	69718461	69718829	LTR|ERVL-MaLR|THE1C	-	chr6	69675973	69749408	LMBRD1|ENST00000650473.1	-	69675973,69676449,69697562,69699042,69700764,69701442,69701888,69713644,69718955,69737941,69741788,69743783,69743987,69749340	69676271,69676541,69697641,69699192,69700869,69701545,69701953,69713797,69719081,69738015,69741877,69743881,69744047,69749408	0.928571
testis_male_adult_54_years	chrX	96441498	96441528	96441527	-	High_confidence	5	5	12	0.445584	3.459432	chrX	96441449	96441529	LTR|ERVL|LTR67B	+	chrX	96440953	96441313	STRG.366129.2	-	96440953	96441313	0.500000
testis_male_adult_54_years	chr3	33289665	33289676	33289675	+	High_confidence	22	24	63	2.339317	5.647837	chr3	33289358	33289726	LINE|L1|L1MEf	+	chr3	33289668	33373303	FBXL2|ENST00000464164.5	+	33289668,33297663,33358966,33359282,33364624,33373091,33373259	33289795,33297725,33359021,33359357,33364719,33373160,33373303	0.571429
testis_male_adult_54_years	chr22	22507046	22507064	22507053	+	RAMPAGE_only	8	10	34	1.262488	4.875000	chr22	22506858	22507363	LTR|ERVL-MaLR|MLT1F	+	chr22	22523054	22523712	STRG.354736.1	+	22523054	22523712	0.647059
testis_male_adult_54_years	chr18	12182289	12182309	12182289	+	RAMPAGE_only	7	7	20	0.742640	4.321928	chr18	12181637	12187780	LINE|L1|L1PA3	+	chr18	12146535	12200089	STRG.324539.14	+	12146535,12148079,12190636,12197926,12198516	12147973,12190359,12191343,12198054,12200089	1.000000
testis_male_adult_54_years	chr4	184700493	184700524	184700523	-	RAMPAGE_only	4	4	24	0.891168	4.368523	chr4	184700300	184700537	SINE|MIR|MIR	-	chr4	184695128	184698096	CENPU|ENST00000502461.1	-	184695128,184697646	184695401,184698096	0.750000
testis_male_adult_54_years	chr4	129771459	129771515	129771480	-	High_confidence	41	43	155	5.755462	6.348061	chr4	129771157	129771679	LTR|ERVL-MaLR|MLT1F	-	chr4	129724170	129771478	LOC101927282|NR_110753.1	-	129724170,129726921,129744307,129749627,129771411	129725789,129727033,129744379,129749720,129771478	0.522581
testis_male_adult_54_years	chr17	50216749	50216765	50216764	-	High_confidence	57	57	107	3.973125	5.126377	chr17	50216390	50216813	LTR|ERVL|ERV3-16A3_I-int	+	chr17	50215557	50216584	STRG.317976.1	-	50215557,50216518	50215828,50216584	0.943925
testis_male_adult_54_years	chr11	8663369	8663416	8663369	-	RAMPAGE_only	6	8	37	1.373884	3.436220	chr11	8663300	8663636	DNA|TcMar-Tigger|MER44A	-	chr11	8610131	8666353	STRG.230034.4	-	8610131,8618749,8619382,8620049,8620445,8621031,8621644,8622815,8624358,8624712,8638653,8640226,8643008,8645740,8646446,8647969,8648415,8649739,8651799	8618003,8618968,8619535,8620124,8620572,8621321,8621819,8622876,8624551,8625228,8638815,8641152,8643126,8645887,8646561,8648086,8648548,8649887,8666353	0.972973
testis_male_adult_54_years	chr2	136088372	136088420	136088419	+	High_confidence	3	3	15	0.556980	3.521641	chr2	136087249	136088587	LTR|ERV1|LTR12C	-	chr2	136087952	136112308	STRG.46192.1	+	136087952,136110839	136088685,136112308	0.733333
testis_male_adult_54_years	chr4	81164921	81164931	81164921	+	High_confidence	13	13	40	1.485280	4.826875	chr4	81164812	81164959	LINE|CR1|X6B_LINE	+	chr4	81164939	81193395	AC139722.1|ENST00000512502.5	+	81164939,81173758,81175443,81192179,81193059	81164998,81173930,81175591,81192246,81193395	0.825000
testis_male_adult_54_years	chr12	79045155	79045156	79045155	+	High_confidence	4	4	6	0.222792	2.584963	chr12	79039621	79045645	LINE|L1|L1PA2	-	chr12	79045630	79450294	SYT1|ENST00000552744.5	+	79045630,79047296,79217502,79285786,79292007,79296068,79299383,79353501,79444072,79448917	79045826,79047362,79217685,79285971,79292130,79296236,79299551,79353619,79444206,79450294	0.500000
testis_male_adult_54_years	chr13	90119598	90119672	90119600	-	High_confidence	9	13	68	2.524977	5.655496	chr13	90119359	90119759	LTR|ERVL-MaLR|MLT1B	-	chr13	90060486	90119576	LINC00559|ENST00000647679.1	-	90060486,90066727,90068750,90079126,90105946,90107853,90119425	90060609,90066810,90068950,90079262,90106202,90108661,90119576	0.544118
testis_male_adult_54_years	chr5	160197669	160197708	160197669	+	RAMPAGE_only	10	11	44	1.633808	4.788755	chr5	160197581	160197748	DNA|hAT-Charlie|MER20	-	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	0.977273
testis_male_adult_54_years	chr3	15738511	15738512	15738511	+	High_confidence	98	99	99	3.676069	4.286456	chr3	15738158	15739435	LTR|ERVK|MER11B	-	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.989899
testis_male_adult_54_years	chr2	95049976	95050000	95049976	-	High_confidence	5	5	15	0.556980	3.664498	chr2	95049975	95050159	SINE|MIR|MIRb	-	chr2	95046513	95049732	STRG.42108.1	-	95046513,95047939,95049616	95046773,95048078,95049732	0.600000
testis_male_adult_54_years	chr6	28528341	28528351	28528350	+	High_confidence	27	27	73	2.710637	5.089731	chr6	28528263	28528443	SINE|MIR|MIR3	-	chr6	28528347	28534922	STRG.139052.1	+	28528347,28529391,28530005,28532320,28533960	28528608,28529604,28530125,28532420,28534922	0.931507
testis_male_adult_54_years	chr14	19400050	19400073	19400050	-	RAMPAGE_only	2	2	11	0.408452	3.121928	chr14	19399503	19400833	LINE|L1|L1PA12	-	chr14	19362467	19434341	STRG.277180.13	-	19362467,19381176,19393649,19404616,19413353,19414561,19416287,19421623,19424164,19425605,19425807,19428541,19428874,19433768	19376011,19383186,19403109,19404735,19413520,19414606,19416358,19421694,19424302,19425712,19426988,19428715,19428989,19434341	0.909091
testis_male_adult_54_years	chr16	75376726	75376746	75376745	-	RAMPAGE_only	3	3	7	0.259924	2.807355	chr16	75376668	75377149	LTR|ERV1|MER66B	+	chr16	75293905	75363035	CFDP1|ENST00000564793.1	-	75293905,75305023,75362874	75294042,75305182,75363035	0.857143
testis_male_adult_54_years	chr1	102853859	102853905	102853874	+	High_confidence	5	5	39	1.448148	4.785152	chr1	102853603	102855052	LTR|ERV1|LTR12C	+	chr1	102853858	102857203	STRG.13757.1	+	102853858	102857203	0.743590
testis_male_adult_54_years	chr12	123617863	123617864	123617863	+	High_confidence	14	14	14	0.519848	3.324863	chr12	123617854	123617910	LINE|RTE-X|L4_A_Mam	-	chr12	123618015	123620422	DDX55|ENST00000421670.3	+	123618015,123619431,123619963	123618837,123619724,123620422	1.000000
testis_male_adult_54_years	chr2	46580204	46580257	46580237	-	High_confidence	35	43	212	7.871986	6.628503	chr2	46579857	46580733	LINE|L2|L2a	+	chr2	46568255	46580238	AC018682.1|ENST00000506009.2	-	46568255,46580034	46569570,46580238	0.679245
testis_male_adult_54_years	chr5	69396531	69396537	69396531	+	RAMPAGE_only	4	4	15	0.556980	3.056565	chr5	69396563	69396626	LINE|L1|L1MB7	+	chr5	69391967	69414255	RAD17|ENST00000513214.1	+	69391967,69393154,69393353,69396396,69400048,69414030	69392013,69393240,69393500,69396546,69400169,69414255	0.933333
testis_male_adult_54_years	chr12	95551422	95551492	95551442	-	High_confidence	18	19	167	6.201046	6.770509	chr12	95551437	95551690	LINE|L2|L2b	+	chr12	95516559	95551490	USP44|ENST00000258499.7	-	95516559,95520996,95524679,95528806,95532828,95551271	95518353,95521202,95524788,95529002,95534326,95551490	0.784431
testis_male_adult_54_years	chr9	114177916	114177932	114177931	+	RAMPAGE_only	2	2	7	0.259924	2.584963	chr9	114177859	114178092	LINE|L2|L2c	-	chr9	114182949	114237831	STRG.209544.3	+	114182949,114195958,114205101,114205758,114206251,114209674,114210981,114219790,114222222,114231078,114231821,114235598,114236980,114237661	114183075,114196012,114205146,114205812,114206296,114209728,114211026,114219844,114222267,114231132,114231866,114235652,114237034,114237831	0.714286
testis_male_adult_54_years	chr8	144103584	144103603	144103602	-	High_confidence	3	3	8	0.297056	3.000000	chr8	144103289	144103558	SINE|MIR|MIR	-	chr8	144098636	144104190	SHARPIN|ENST00000398712.6	-	144098636,144098865,144099080,144099276,144099509,144099702,144099928,144103050,144103552	144098788,144098994,144099205,144099430,144099618,144099844,144100069,144103225,144104190	0.875000
testis_male_adult_54_years	chr10	52149528	52149561	52149550	+	RAMPAGE_only	13	13	36	1.336752	4.712319	chr10	52149386	52149774	LTR|ERVL-MaLR|MLT1B	+	chr10	52046747	52185074	PRKG1|ENST00000646354.1	+	52046747,52054483,52062536,52125733,52128369,52133839,52161888,52184687	52046926,52054561,52062631,52125983,52128541,52133905,52161963,52185074	0.500000
testis_male_adult_54_years	chr7	122915021	122915037	122915036	+	High_confidence	4	4	14	0.519848	3.334679	chr7	122914686	122915245	LTR|ERV1|LTR9	-	chr7	122915055	122915600	STRG.172763.1	+	122915055	122915600	0.857143
testis_male_adult_54_years	chr4	187646335	187646370	187646342	-	High_confidence	112	112	587	21.796491	7.164670	chr4	187646065	187646513	DNA|TcMar-Tigger|MER44D	+	chr4	187591994	187646412	STRG.110541.1	-	187591994,187646209	187592927,187646412	0.703578
testis_male_adult_54_years	chr12	53388667	53388718	53388667	+	RAMPAGE_only	6	6	24	0.891168	4.334963	chr12	53388697	53388988	SINE|Alu|AluJb	+	chr12	53380643	53416446	SP1|NM_003109.1	+	53380643,53381658,53382109,53406584,53409361,53410926	53380684,53381813,53383622,53406753,53409561,53416446	1.000000
testis_male_adult_54_years	chr4	56455748	56455776	56455764	+	RAMPAGE_only	4	4	10	0.371320	3.121928	chr4	56455385	56455989	LINE|L1|HAL1	-	chr4	56444715	56461361	STRG.94821.5	+	56444715,56448417,56448709,56450618,56453602,56459371	56446873,56448597,56448823,56452081,56453761,56461361	1.000000
testis_male_adult_54_years	chr16	15646222	15646223	15646222	-	RAMPAGE_only	5	5	8	0.297056	2.807355	chr16	15646179	15646285	SINE|MIR|MIRc	+	chr16	15594368	15643166	KIAA0430|NM_014647.3	-	15594368,15598853,15600427,15600640,15601990,15604167,15608290,15609522,15610974,15611591,15612556,15615829,15617051,15617298,15620450,15621732,15622933,15624768,15625015,15625371,15630331,15631380,15633616,15634756,15635655,15639089,15643017	15596937,15599024,15600553,15600701,15602203,15604398,15608518,15609725,15611108,15611734,15612777,15616005,15617171,15617535,15620531,15621911,15623123,15624927,15625173,15625800,15630504,15631498,15633843,15634931,15636342,15639291,15643166	0.875000
testis_male_adult_54_years	chr1	55823738	55823765	55823757	+	High_confidence	4	4	19	0.705508	4.058814	chr1	55823672	55823930	LINE|L2|L2c	-	chr1	55823806	55868248	AL603840.1|ENST00000424357.1	+	55823806,55832263,55847428,55862931,55868097	55823901,55832425,55847537,55863059,55868248	0.526316
testis_male_adult_54_years	chr17	68245882	68245897	68245882	+	High_confidence	6	8	14	0.519848	3.664498	chr17	68245744	68245921	LINE|L2|L2c	-	chr17	68246582	68254562	STRG.321549.9	+	68246582,68248639,68250187,68250793,68251049,68254403	68246627,68248705,68250470,68250967,68251178,68254562	0.785714
testis_male_adult_54_years	chr7	150041263	150041264	150041263	+	High_confidence	6	6	6	0.222792	2.584963	chr7	150040867	150041464	LTR|ERV1|HERVE-int	-	chr7	150041362	150045092	AC092666.1|ENST00000493400.1	+	150041362,150044749	150041461,150045092	1.000000
testis_male_adult_54_years	chr17	71413676	71413702	71413690	-	High_confidence	3	3	16	0.594112	3.323231	chr17	71413315	71413771	LTR|ERVL-MaLR|MLT1D	-	chr17	71413429	71413674	STRG.321424.1	-	71413429	71413674	0.875000
testis_male_adult_54_years	chr2	190365150	190365151	190365150	+	RAMPAGE_only	9	9	9	0.334188	3.169925	chr2	190365069	190365189	DNA|TcMar-Tigger|Tigger15a	-	chr2	190368643	190371041	INPP1|ENST00000470892.1	+	190368643,190370843	190369277,190371041	0.666667
testis_male_adult_54_years	chr16	48417190	48417201	48417200	-	High_confidence	2	2	7	0.259924	2.584963	chr16	48416182	48417559	Retroposon|SVA|SVA_B	-	chr16	48387197	48417319	SIAH1|ENST00000567973.1	-	48387197,48403569,48416815	48387268,48403667,48417319	0.571429
testis_male_adult_54_years	chr20	48984159	48984169	48984159	+	RAMPAGE_only	2	2	8	0.297056	3.000000	chr20	48984074	48984541	LTR|ERVL-MaLR|MLT1J	-	chr20	48921889	49036693	ARFGEF2|ENST00000371917.4	+	48921889,48941198,48941863,48951322,48952704,48953555,48963829,48965871,48969146,48971119,48972325,48973144,48974765,48976015,48984728,48985407,48988303,48988490,48989284,48989555,48991039,48994450,48995782,48998192,48998335,49005069,49010231,49011923,49013563,49013830,49016279,49017248,49017495,49018883,49023050,49025312,49028529,49032048,49033022	48922010,48941229,48941987,48951469,48952884,48953790,48963898,48966023,48969277,48971354,48972425,48973284,48974874,48976199,48984840,48985613,48988388,48988662,48989436,48989684,48991198,48994598,48995882,48998233,48998505,49005221,49010404,49012084,49013694,49013960,49016415,49017387,49017550,49018998,49023181,49025481,49028668,49032166,49036693	0.625000
testis_male_adult_54_years	chr1	217523868	217523894	217523868	-	RAMPAGE_only	3	3	15	0.556980	3.807355	chr1	217523175	217524901	Retroposon|SVA|SVA_D	-	chr1	217427006	217631082	STRG.24985.1	-	217427006,217449248,217491679,217495014,217498355,217514821,217610320,217610888,217614140,217619782,217630915	217431365,217449337,217492693,217495075,217498395,217514889,217610400,217611071,217614202,217620499,217631082	0.600000
testis_male_adult_54_years	chr2	131577549	131577579	131577578	+	RAMPAGE_only	18	19	33	1.225356	4.718488	chr2	131577132	131577656	LINE|L1|L1MA6	-	chr2	131543490	131676380	STRG.46606.28	+	131543490,131545045,131553012,131555071,131557350,131564860,131575034,131577507,131580151,131582017,131588664,131596773,131597047,131600004,131601422,131604017,131609381,131611132,131612985,131625937,131629837	131543823,131545201,131553166,131555184,131557463,131564972,131575207,131577614,131580264,131582129,131592104,131596888,131597221,131600111,131601556,131604088,131609452,131611709,131613103,131629655,131676380	0.848485
testis_male_adult_54_years	chr8	43007466	43007473	43007472	+	RAMPAGE_only	3	3	8	0.297056	2.807355	chr8	43007390	43007506	LINE|L1|L1ME3	-	chr8	42997589	43018392	HOOK3|ENST00000533539.1	+	42997589,43000270,43002106,43007846,43010304,43013050,43013328,43018357	42997637,43000276,43002141,43007929,43010405,43013155,43013400,43018392	0.875000
testis_male_adult_54_years	chr12	57935484	57935502	57935485	-	High_confidence	5	9	16	0.594112	3.702820	chr12	57935455	57935567	LINE|L2|L2	+	chr12	57931568	57936059	AC084033.3|ENST00000547492.1	-	57931568,57935469	57931737,57936059	0.687500
testis_male_adult_54_years	chr10	94107504	94107510	94107504	+	RAMPAGE_only	3	3	7	0.259924	2.584963	chr10	94107492	94107725	LINE|CR1|X7B_LINE	+	chr10	94109115	94121107	AL139118.1|ENST00000432707.1	+	94109115,94120716	94109170,94121107	0.571429
testis_male_adult_54_years	chr12	130994221	130994222	130994221	+	High_confidence	4	4	7	0.259924	2.584963	chr12	130994244	130994284	LINE|L2|L2b	+	chr12	130994156	131141247	STRG.263860.2	+	130994156,131000382,131003184,131004185,131005971,131014198,131076800,131084539,131104830,131105753,131108723,131118384,131120846,131131724,131136036,131136972,131138136,131139167	130994267,131000442,131003302,131004296,131006047,131014340,131076874,131084663,131104934,131105865,131108877,131118451,131120913,131131816,131136163,131137014,131138229,131141247	0.714286
testis_male_adult_54_years	chr7	115789896	115789910	115789896	+	High_confidence	3	3	13	0.482716	3.418296	chr7	115789220	115790263	LTR|ERV1|LTR12D	-	chr7	115789728	115791049	AC093714.2|ENST00000489626.1	+	115789728,115790428,115791017	115790266,115790621,115791049	0.692308
testis_male_adult_54_years	chr7	9621764	9621814	9621813	+	High_confidence	9	9	36	1.336752	4.900712	chr7	9620612	9622009	LTR|ERV1|LTR12C	-	chr7	9621447	9622458	STRG.158048.1	+	9621447	9622458	0.666667
testis_male_adult_54_years	chr4	13589096	13589097	13589096	-	RAMPAGE_only	70	71	83	3.081957	5.575970	chr4	13588885	13589056	SINE|MIR|MIRb	-	chr4	13582229	13593520	BOD1L1|ENST00000511119.1	-	13582229,13582651,13586395,13587698,13588721,13590385,13591922	13582310,13582736,13586475,13587771,13588792,13590446,13593520	0.698795
testis_male_adult_54_years	chr1	182929655	182929676	182929670	-	RAMPAGE_only	6	6	23	0.854036	3.649001	chr1	182929480	182929635	LINE|L2|L2a	-	chr1	182899864	182953023	SHCBP1L|ENST00000483655.5	-	182899864,182903038,182904179,182905495,182929646,182939175,182939466,182940328,182951317,182951936,182952728	182900234,182903161,182904430,182905649,182929752,182939394,182939553,182940543,182951467,182951989,182953023	0.913043
testis_male_adult_54_years	chr15	33128894	33128920	33128894	-	High_confidence	10	12	20	0.742640	3.747413	chr15	33128552	33129144	LTR|ERV1|LTR12_	-	chr15	32969069	33128844	STRG.291720.4	-	32969069,33008013,33064956,33088798,33092132,33128549	32969477,33008075,33065074,33088974,33092203,33128844	0.850000
testis_male_adult_54_years	chr6	4605218	4605248	4605218	+	High_confidence	10	12	36	1.336752	3.568571	chr6	4605049	4605491	LTR|ERVL-MaLR|MLT1C	+	chr6	4605227	4605596	STRG.135139.1	+	4605227	4605596	0.972222
testis_male_adult_54_years	chr13	62029539	62029572	62029539	-	High_confidence	5	7	22	0.816904	4.186704	chr13	62029501	62029586	SINE|MIR|MIRb	+	chr13	62003524	62029548	LINC00358|NR_046995.1	-	62003524,62029258	62004510,62029548	0.727273
testis_male_adult_54_years	chr3	28262215	28262218	28262217	+	High_confidence	3	5	8	0.297056	3.000000	chr3	28261981	28262267	LINE|L1|HAL1ME	-	chr3	28263111	28319741	CMC1|ENST00000396610.6	+	28263111,28316332,28319508	28263380,28316423,28319741	0.500000
testis_male_adult_54_years	chr9	133278823	133278827	133278823	-	High_confidence	61	65	104	3.861729	4.772840	chr9	133278706	133278970	LTR|ERV1|LTR10B2	-	chr9	133277891	133278866	STRG.211605.1	-	133277891,133278592	133278240,133278866	0.971154
testis_male_adult_54_years	chr19	52274453	52274477	52274458	+	High_confidence	25	26	111	4.121653	6.294907	chr19	52274460	52274600	DNA|TcMar-Tigger|Tigger3	+	chr19	52274461	52292724	ZNF766|ENST00000593612.1	+	52274461,52277153,52282110,52283284,52290065,52292148	52274513,52277541,52282237,52283413,52291124,52292724	0.828829
testis_male_adult_54_years	chr3	45024387	45024396	45024395	+	High_confidence	2	3	7	0.259924	2.584963	chr3	45024219	45024454	DNA|TcMar-Tigger|Tigger3b	-	chr3	45023845	45025497	STRG.66980.1	+	45023845	45025497	0.714286
testis_male_adult_54_years	chr2	121778953	121778954	121778953	-	RAMPAGE_only	51	51	67	2.487845	4.817406	chr2	121778916	121779171	LTR|ERVL|LTR33	+	chr2	121775386	121776112	STRG.45114.1	-	121775386	121776112	0.746269
testis_male_adult_54_years	chr4	44017316	44017317	44017316	+	High_confidence	4	5	7	0.259924	2.584963	chr4	44017118	44017675	DNA|TcMar-Tigger|Tigger3b	+	chr4	44017061	44022061	LVCAT1|NR_131958.1	+	44017061,44019750	44017370,44022061	0.857143
testis_male_adult_54_years	chr10	49092764	49092768	49092767	+	High_confidence	13	13	26	0.965432	3.855389	chr10	49092537	49093391	LTR|ERV1|LTR1A2	+	chr10	49092932	49093346	STRG.218048.1	+	49092932	49093346	0.692308
testis_male_adult_54_years	chr6	26956949	26957058	26956949	+	High_confidence	14	15	154	5.718330	6.570337	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26956992	27023924	LINC00240|ENST00000606878.1	+	26956992,26968457,27023253	26957183,26968522,27023924	0.525974
testis_male_adult_54_years	chr21	46142190	46142195	46142190	-	High_confidence	2	2	6	0.222792	2.584963	chr21	46142159	46142199	LTR|ERV1|LTR12_	-	chr21	46136261	46142669	STRG.353113.8	-	46136261,46137238,46138879,46140229,46140570	46137073,46138646,46140179,46140520,46142669	1.000000
testis_male_adult_54_years	chr2	113704173	113704174	113704173	-	High_confidence	176	177	182	6.758026	6.597791	chr2	113703868	113704969	LTR|ERV1|LTR12E	-	chr2	113677701	113704078	AC017074.1|ENST00000424612.1	-	113677701,113688160,113703696	113677783,113688257,113704078	0.708791
testis_male_adult_54_years	chr5	139597311	139597323	139597311	+	RAMPAGE_only	4	4	8	0.297056	2.750000	chr5	139597105	139597383	LINE|L1|L1ME1	-	chr5	139599561	139626801	UBE2D2|ENST00000253815.3	+	139599561,139600371,139614585,139614696,139614860,139623367,139626755	139599585,139600435,139614617,139614774,139614966,139623461,139626801	0.750000
testis_male_adult_54_years	chr4	151955976	151955999	151955976	+	High_confidence	116	117	335	12.439224	6.787139	chr4	151955788	151956326	LTR|ERVL-MaLR|MLT1F1	+	chr4	151955990	151969381	AC097375.3|ENST00000515329.1	+	151955990,151966995	151956256,151969381	0.955224
testis_male_adult_54_years	chr21	31088016	31088050	31088016	-	High_confidence	202	204	324	12.030772	6.249749	chr21	31087646	31088758	LTR|ERV1|LTR12D	-	chr21	30988266	31088058	STRG.350817.1	-	30988266,30989414,31087614	30989118,30989589,31088058	0.820988
testis_male_adult_54_years	chr17	69004719	69004748	69004719	+	High_confidence	3	3	13	0.482716	3.026987	chr17	69000000	69005148	LINE|L1|L1HS	-	chr17	69004713	69018323	ABCA9-AS1|ENST00000458677.1	+	69004713,69011982,69012251,69018103	69004793,69012103,69012353,69018323	0.846154
testis_male_adult_54_years	chr15	89524020	89524037	89524020	-	High_confidence	6	6	22	0.816904	3.984184	chr15	89523825	89524148	LTR|ERVL-MaLR|MLT1H	+	chr15	89514587	89524016	LINC00928|ENST00000559227.1	-	89514587,89517283,89523580	89514833,89517437,89524016	0.772727
testis_male_adult_54_years	chr2	173457597	173457639	173457619	+	High_confidence	8	11	28	1.039696	4.637538	chr2	173457279	173457720	LINE|L2|L2b	+	chr2	173457629	173457910	STRG.51080.1	+	173457629	173457910	0.535714
testis_male_adult_54_years	chr12	132446048	132446081	132446056	-	High_confidence	21	40	83	3.081957	5.264931	chr12	132445742	132446081	LTR|ERV1|LTR8	+	chr12	132444766	132446065	STRG.264072.1	-	132444766	132446065	0.987952
testis_male_adult_54_years	chr13	30711973	30712003	30712002	-	High_confidence	11	21	42	1.559544	4.660058	chr13	30711749	30712172	LTR|ERVL-MaLR|MLT1C	-	chr13	30711685	30712035	STRG.265562.1	-	30711685	30712035	0.738095
testis_male_adult_54_years	chr12	3899016	3899051	3899050	+	High_confidence	25	39	91	3.379013	5.509732	chr12	3898655	3899132	LINE|CR1|L3	+	chr12	3899052	3910306	AC005842.1|ENST00000545357.1	+	3899052,3909883	3899187,3910306	0.780220
testis_male_adult_54_years	chr16	46488054	46488066	46488065	-	RAMPAGE_only	3	5	9	0.334188	3.169925	chr16	46486718	46489191	LINE|L1|L1MA5	+	chr16	46469340	46517951	ANKRD26P1|ENST00000571006.5	-	46469340,46474248,46475765,46478328,46479131,46487997,46498104,46499935,46506173,46517909	46471928,46474329,46475994,46478543,46479419,46488123,46498251,46500889,46506244,46517951	1.000000
testis_male_adult_54_years	chr12	66571036	66571076	66571065	-	High_confidence	5	5	26	0.965432	4.213661	chr12	66570889	66571055	SINE|MIR|MIRc	-	chr12	66371818	66571058	GRIP1|ENST00000536215.5	-	66371818,66377173,66379279,66392307,66392676,66394207,66406282,66420719,66432547,66444583,66445321,66462923,66465274,66515618,66517900,66529830,66539077,66541814,66570961	66371927,66377285,66379436,66392502,66392816,66394352,66406428,66420789,66432628,66444729,66445508,66463093,66465422,66515764,66517976,66529914,66539223,66541950,66571058	0.692308
testis_male_adult_54_years	chr2	179585899	179585916	179585907	-	High_confidence	19	41	91	3.379013	6.144163	chr2	179585808	179585966	LINE|L2|L2c	+	chr2	179441981	179585906	ZNF385B|NR_104234.1	-	179441981,179443223,179444875,179445549,179446524,179483271,179514084,179518527,179534706,179544826,179576115,179583974,179585867	179442177,179443468,179444966,179445728,179446770,179483434,179514246,179518638,179534788,179544969,179576267,179584067,179585906	0.527473
testis_male_adult_54_years	chr12	31804982	31804983	31804982	-	High_confidence	331	333	337	12.513488	6.004102	chr12	31804677	31806355	LTR|ERV1|LTR12C	-	chr12	31802145	31804976	STRG.251186.1	-	31802145,31804674	31802163,31804976	0.818991
testis_male_adult_54_years	chr14	90255560	90255596	90255576	+	High_confidence	5	5	13	0.482716	3.418296	chr14	90255490	90255705	SINE|Alu|AluSx1	-	chr14	90256494	90275429	PSMC1|ENST00000261303.12	+	90256494,90259159,90260114,90263317,90263661,90264040,90265069,90268223,90269396,90270197,90272272	90256600,90259213,90260211,90263442,90263847,90264169,90265166,90268413,90269548,90270352,90275429	0.615385
testis_male_adult_54_years	chr1	156926276	156926294	156926281	+	High_confidence	75	77	185	6.869422	6.554566	chr1	156926159	156926576	LTR|ERVL-MaLR|MLT1F2	-	chr1	156926248	156933089	STRG.17651.6	+	156926248,156927201,156927495,156927732,156927914,156929279,156929635,156930528,156931912,156932423,156932852	156926540,156927270,156927655,156927816,156928004,156929429,156929729,156930617,156932027,156932545,156933089	0.929730
testis_male_adult_54_years	chr5	62408648	62408654	62408648	+	RAMPAGE_only	9	9	16	0.594112	3.375000	chr5	62408537	62408731	SINE|Alu|AluYc	+	chr5	62412660	62443035	IPO11|ENST00000505902.5	+	62412660,62422504,62437273,62442982	62412929,62422568,62437417,62443035	0.625000
testis_male_adult_54_years	chr12	17007670	17007687	17007682	+	RAMPAGE_only	12	14	33	1.225356	4.663910	chr12	17007441	17008770	LTR|ERV1|LTR12C	+	chr12	17011428	17012138	STRG.248737.1	+	17011428	17012138	0.545455
testis_male_adult_54_years	chr12	118871451	118871463	118871451	+	RAMPAGE_only	38	47	105	3.898861	5.631986	chr12	118871156	118871633	LINE|L1|L1ME1	+	chr12	118875064	118875643	STRG.262164.1	+	118875064	118875643	0.571429
testis_male_adult_54_years	chr11	114651543	114651544	114651543	-	High_confidence	71	73	90	3.341881	4.682208	chr11	114651116	114651893	LTR|ERV1|LTR12	-	chr11	114651119	114651571	STRG.242777.1	-	114651119	114651571	0.977778
testis_male_adult_54_years	chr3	72060208	72060242	72060221	-	RAMPAGE_only	40	40	207	7.686326	5.718211	chr3	72060163	72060375	SINE|MIR|MIRb	-	chr3	72059821	72100112	LINC00877|ENST00000470712.1	-	72059821,72060802,72099903	72060109,72061094,72100112	0.642512
testis_male_adult_54_years	chr19	58312242	58312243	58312242	+	RAMPAGE_only	7	7	9	0.334188	3.000000	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.555556
testis_male_adult_54_years	chr5	92631318	92631356	92631355	-	High_confidence	3	3	14	0.519848	3.334679	chr5	92631147	92632588	LTR|ERV1|LTR12C	+	chr5	92558876	92631830	STRG.121982.1	-	92558876,92631142	92560033,92631830	0.642857
testis_male_adult_54_years	chr7	6710100	6710130	6710100	+	High_confidence	9	9	32	1.188224	4.640224	chr7	6709703	6710166	LTR|ERV1|LTR45B	-	chr7	6710127	6753862	PMS2CL|ENST00000486256.5	+	6710127,6710749,6711293,6730181,6730633,6731896,6733398,6735304,6737075,6741684,6746087,6747035,6751248,6753021	6710238,6710808,6711469,6730301,6730727,6731955,6733527,6735389,6737936,6741852,6746188,6747205,6751601,6753862	0.656250
testis_male_adult_54_years	chr11	64420316	64420389	64420349	+	High_confidence	8	8	46	1.708073	4.943593	chr11	64420124	64420355	DNA|TcMar-Tigger|Tigger15a	-	chr11	64420390	64421057	AP003774.2|ENST00000569737.1	+	64420390,64420731	64420622,64421057	0.869565
testis_male_adult_54_years	chr16	20813216	20813301	20813216	+	RAMPAGE_only	15	15	50	1.856601	5.053661	chr16	20813204	20813261	DNA|hAT-Ac|OldhAT1	+	chr16	20807156	20825871	REXO5|ENST00000563617.1	+	20807156,20813189,20814926,20816115,20821761,20824438,20825832	20807363,20813302,20815053,20816212,20821902,20824527,20825871	0.860000
testis_male_adult_54_years	chr1	54641915	54641923	54641915	+	High_confidence	6	6	10	0.371320	3.321928	chr1	54641894	54641996	DNA|hAT-Tip100|MamTip2	+	chr1	54641821	54700223	MROH7|ENST00000395690.6	+	54641821,54651948,54652852,54665166,54668853,54670496,54670799,54673090,54673700,54674015,54678741,54679262,54679890,54682655,54686257,54692423,54695375,54697652,54700068	54641968,54651983,54654157,54665240,54668937,54670576,54670929,54673186,54673805,54674151,54678854,54679439,54680045,54682794,54686448,54692561,54695490,54697690,54700223	0.900000
testis_male_adult_54_years	chr21	29011484	29011509	29011501	-	RAMPAGE_only	15	15	36	1.336752	4.686147	chr21	29010642	29012782	Retroposon|SVA|SVA_D	+	chr21	29007899	29019340	RWDD2B|ENST00000481411.1	-	29007899,29009594,29019210	29008621,29009692,29019340	0.500000
testis_male_adult_54_years	chr13	107253910	107253939	107253910	-	High_confidence	5	5	19	0.705508	4.169925	chr13	107253636	107254013	LINE|L2|L2b	+	chr13	107166510	107254250	STRG.276054.2	-	107166510,107172528,107210583,107253684	107170786,107172574,107210755,107254250	0.736842
testis_male_adult_54_years	chr19	55257674	55257680	55257674	-	High_confidence	27	29	52	1.930865	5.201145	chr19	55257534	55257831	LINE|L2|L2c	+	chr19	55229778	55258670	PPP6R1|NM_014931.3	-	55229778,55230612,55230773,55231409,55231597,55231801,55232074,55236642,55236912,55239404,55239593,55239825,55239998,55240235,55240944,55241238,55241476,55242165,55242375,55245119,55245264,55245491,55246876,55258434	55230531,55230684,55230884,55231491,55231668,55231982,55232211,55236821,55236970,55239502,55239683,55239911,55240114,55240300,55241079,55241391,55241639,55242279,55242488,55245185,55245402,55245678,55247109,55258670	0.884615
testis_male_adult_54_years	chrX	51629451	51629479	51629451	+	High_confidence	2	3	14	0.519848	3.521641	chrX	51629316	51629539	LTR|ERV1|MER66C	-	chrX	51629456	51644257	STRG.362932.1	+	51629456,51638177,51639779,51641806	51629566,51638287,51639901,51644257	0.714286
testis_male_adult_54_years	chrX	53614535	53614553	53614547	-	RAMPAGE_only	2	2	8	0.297056	2.521641	chrX	53614388	53614509	SINE|MIR|MIR3	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.875000
testis_male_adult_54_years	chr9	109450	109471	109450	-	RAMPAGE_only	3	3	8	0.297056	3.000000	chr9	109216	109514	LINE|L2|L2b	+	chr9	105453	114713	STRG.195849.4	-	105453,112958	109469,114713	0.875000
testis_male_adult_54_years	chr4	4585627	4585628	4585627	+	High_confidence	16	16	20	0.742640	3.681881	chr4	4585405	4585928	LTR|ERVL-MaLR|MLT1A0-int	+	chr4	4584955	4588284	STRG.88153.1	+	4584955	4588284	0.950000
testis_male_adult_54_years	chr15	24508934	24508950	24508949	+	RAMPAGE_only	3	3	6	0.222792	2.584963	chr15	24508830	24509353	LTR|ERVL|MER54A	-	chr15	24533694	24587777	PWRN1|ENST00000568045.5	+	24533694,24535679,24566655,24568530,24569782,24570031,24574509,24574906,24587566	24533952,24535806,24566800,24568563,24569809,24570128,24574813,24575003,24587777	0.833333
testis_male_adult_54_years	chr16	86722092	86722095	86722092	+	High_confidence	3	4	7	0.259924	2.584963	chr16	86722054	86722212	LTR|ERVL-MaLR|MLT1A0	+	chr16	86722090	86742083	LINC02188|ENST00000569740.6	+	86722090,86734825,86737409	86722131,86734909,86742083	0.714286
testis_male_adult_54_years	chr2	218549809	218549866	218549809	-	RAMPAGE_only	5	6	32	1.188224	4.284684	chr2	218549464	218549763	SINE|Alu|AluSx	-	chr2	218454814	218568291	USP37|ENST00000418019.5	-	218454814,218455579,218457091,218459789,218463305,218466009,218474629,218476839,218479649,218482069,218485663,218488303,218495759,218497733,218498025,218509978,218529955,218534608,218546220,218546918,218549808,218553552,218558497,218560819,218562717,218568177	218455017,218455718,218457161,218459905,218463366,218466176,218474885,218476981,218479715,218482234,218485743,218488421,218495950,218497857,218498157,218510140,218530040,218534706,218546298,218547091,218549909,218553724,218558677,218560883,218562813,218568291	0.875000
testis_male_adult_54_years	chr17	6190504	6190529	6190528	-	High_confidence	28	33	108	4.010257	5.658139	chr17	6190517	6190627	SINE|MIR|MIR	+	chr17	6189453	6190541	AC104770.1|ENST00000573698.1	-	6189453,6189724,6190453	6189554,6189860,6190541	0.750000
testis_male_adult_54_years	chr4	22778700	22778718	22778717	+	High_confidence	18	20	58	2.153657	5.336176	chr4	22777716	22779135	LTR|ERV1|LTR12C	-	chr4	22778539	22819968	STRG.91250.2	+	22778539,22818720	22779190,22819968	0.862069
testis_male_adult_54_years	chr14	89957909	89957914	89957909	-	RAMPAGE_only	77	86	154	5.718330	6.379226	chr14	89957831	89958835	LTR|ERV1|LTR28C	-	chr14	89794983	89954777	EFCAB11|NM_145231.3	-	89794983,89931540,89932525,89950096,89953905,89954585	89797324,89931631,89932627,89950142,89954001,89954777	0.551948
testis_male_adult_54_years	chr4	106321354	106321379	106321378	+	RAMPAGE_only	2	2	8	0.297056	2.750000	chr4	106320774	106322302	Retroposon|SVA|SVA_A	+	chr4	106316506	106349225	AIMP1|NM_001142416.1	+	106316506,106324984,106327450,106328075,106331671,106336868,106347525	106316594,106325118,106327564,106328243,106331883,106337037,106349225	1.000000
testis_male_adult_54_years	chr18	68823386	68823387	68823386	+	High_confidence	309	320	401	14.889936	5.297754	chr18	68822847	68823421	LTR|ERV1|MER51E	+	chr18	68823373	68897793	CCDC102B|ENST00000577772.5	+	68823373,68836748,68838705,68846312,68874668,68897218,68897577	68823416,68837369,68838926,68846421,68874785,68897428,68897793	0.980050
testis_male_adult_54_years	chr11	117110002	117110003	117110002	-	High_confidence	20	20	21	0.779772	4.121928	chr11	117109618	117111006	LTR|ERV1|LTR12C	-	chr11	117109637	117109970	STRG.243241.1	-	117109637	117109970	0.523810
testis_male_adult_54_years	chr17	5118250	5118254	5118250	+	RAMPAGE_only	7	7	17	0.631244	3.286896	chr17	5118191	5119096	LTR|ERV1|LTR28B	-	chr17	5116437	5174991	STRG.312747.7	+	5116437,5118199,5125820,5129935,5130366,5130601,5132395,5132909,5133442,5133886,5135233,5135807,5136639,5137120,5137650,5138120,5139254,5141424,5142002,5142396,5144689,5145404,5146022,5147082,5148555,5155421,5161527,5162883,5167931,5168766,5170478,5171586,5172804	5116740,5125272,5128922,5130089,5130439,5130684,5132435,5132990,5133550,5133996,5135282,5135928,5136734,5137186,5137750,5138273,5139674,5141499,5142141,5142502,5144863,5145579,5146174,5147194,5148767,5155606,5161614,5163004,5168123,5169055,5170915,5171679,5174991	1.000000
testis_male_adult_54_years	chr17	37623656	37623657	37623656	-	RAMPAGE_only	11	14	17	0.631244	3.577820	chr17	37623468	37623691	LINE|L2|L2c	+	chr17	37609738	37621173	DDX52|ENST00000616646.4	-	37609738,37612109,37618291,37619767,37620872,37621126	37610157,37614353,37618384,37619839,37620948,37621173	0.764706
testis_male_adult_54_years	chr16	74281482	74281508	74281503	-	RAMPAGE_only	4	4	17	0.631244	3.499228	chr16	74281396	74281660	LTR|ERV1|LTR48	-	chr16	74255956	74280192	STRG.309646.8	-	74255956	74280192	0.529412
testis_male_adult_54_years	chr5	142875135	142875165	142875164	+	High_confidence	3	3	14	0.519848	3.521641	chr5	142875200	142875313	SINE|MIR|MIR3	+	chr5	142874892	142919443	ARHGAP26|ENST00000475287.2	+	142874892,142879373,142885297,142894237,142901934,142903539,142907703,142913198,142919210	142875171,142879445,142885399,142894348,142902039,142903669,142907804,142913293,142919443	1.000000
testis_male_adult_54_years	chr1	26301699	26301702	26301699	-	RAMPAGE_only	6	6	10	0.371320	3.121928	chr1	26301608	26301669	LINE|L2|L2	-	chr1	26285942	26303016	UBXN11|ENST00000442942.6	-	26285942,26294204,26296918,26297426,26297961,26301693,26302812	26286037,26294331,26296995,26297481,26298062,26301722,26303016	1.000000
testis_male_adult_54_years	chr7	66491196	66491228	66491227	-	High_confidence	2	2	8	0.297056	2.521641	chr7	66490886	66491325	LTR|ERVL-MaLR|MLT1D	+	chr7	66388634	66491456	LINC00174|ENST00000640964.1	-	66388634,66389184,66399691,66400321,66400922,66401194,66402456,66407289,66409059,66411614,66427948,66429678,66429883,66439134,66450070,66455658,66467681,66476258,66479008,66480393,66481540,66485094,66489937,66491030	66388845,66390250,66399795,66400437,66401027,66401394,66402545,66407364,66409244,66411702,66428040,66429757,66430017,66439304,66450236,66455853,66467719,66476327,66479096,66480448,66481599,66485153,66490107,66491456	0.750000
testis_male_adult_54_years	chr6	35128286	35128316	35128286	-	RAMPAGE_only	7	9	15	0.556980	3.664498	chr6	35128012	35128576	LTR|ERVL-MaLR|MLT1E1A	-	chr6	35118071	35121045	TCP11|ENST00000502480.5	-	35118071,35119227,35120158,35120428,35120908	35118303,35119391,35120340,35120646,35121045	0.600000
testis_male_adult_54_years	chr5	56910793	56910823	56910800	+	High_confidence	4	4	24	0.891168	4.277613	chr5	56910787	56910937	SINE|MIR|MIRc	+	chr5	56910061	56917338	SETD9|NM_001323018.1	+	56910061,56911168,56913010,56913873,56914860,56916814	56910394,56911536,56913134,56913989,56914966,56917338	0.541667
testis_male_adult_54_years	chr6	104446577	104446587	104446579	-	High_confidence	6	8	16	0.594112	3.750000	chr6	104446155	104447635	LTR|ERV1|LTR12C	+	chr6	104428689	104446747	STRG.148472.3	-	104428689,104429472,104446051	104428775,104429532,104446747	0.750000
testis_male_adult_54_years	chr5	71289738	71289753	71289752	-	High_confidence	5	5	11	0.408452	3.095795	chr5	71289262	71290389	LTR|ERV1|LTR12E	-	chr5	71035328	71289789	STRG.119601.2	-	71035328,71037506,71041521,71042180,71045443,71048005,71048761,71049067,71055351,71059689,71060119,71060843,71061271,71061687,71062707,71067493,71074122,71076310,71079796,71082776,71093046,71104743,71108660,71112678,71123616,71126594,71126988,71127779,71142644,71197645,71198369,71204265,71207942,71220281,71222294,71225966,71259189,71260810,71289594	71035796,71037546,71041624,71042284,71045507,71048113,71048849,71049158,71055457,71059744,71060170,71060930,71061308,71061765,71062796,71068120,71074326,71076352,71079968,71082992,71093192,71104911,71111688,71112760,71123716,71126714,71127040,71128753,71142759,71197781,71202427,71204350,71208130,71220456,71222379,71226154,71259345,71260844,71289789	1.000000
testis_male_adult_54_years	chr17	2667258	2667309	2667308	+	High_confidence	7	7	20	0.742640	4.221928	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.800000
testis_male_adult_54_years	chr1	17759290	17759331	17759290	+	High_confidence	4	4	16	0.594112	3.906891	chr1	17759155	17759614	LTR|ERVL|LTR41	+	chr1	17759244	17827044	STRG.1651.2	+	17759244,17822984,17825766	17759486,17823356,17827044	0.687500
testis_male_adult_54_years	chr1	6724244	6724248	6724244	-	High_confidence	3	3	6	0.222792	2.584963	chr1	6724048	6724433	LTR|ERVL-MaLR|MSTA	-	chr1	6723401	6724092	STRG.1025.1	-	6723401	6724092	0.500000
testis_male_adult_54_years	chr16	31508578	31508581	31508578	+	High_confidence	3	3	9	0.334188	2.500000	chr16	31508624	31508714	SINE|MIR|MIRc	+	chr16	31508470	31509256	AC026471.2|ENST00000569782.2	+	31508470,31509167	31509036,31509256	0.555556
testis_male_adult_54_years	chr8	57216335	57216375	57216335	+	RAMPAGE_only	9	10	27	1.002564	4.546594	chr8	57215679	57216365	LTR|ERV1|MER50	-	chr8	57193619	57220236	STRG.184749.4	+	57193619,57193884,57210733,57212877,57215108,57218269,57220110	57193689,57206354,57212583,57214932,57217976,57219623,57220236	0.962963
testis_male_adult_54_years	chr7	137268353	137268453	137268452	-	High_confidence	1605	1641	4514	167.613898	7.135947	chr7	137268351	137268846	LTR|ERV1|LTR2B	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.984936
testis_male_adult_54_years	chr12	63746651	63746658	63746651	-	RAMPAGE_only	4	4	9	0.334188	3.000000	chr12	63746488	63746844	LTR|ERVL-MaLR|THE1B	-	chr12	63684747	63724935	AC084357.3|ENST00000543539.1	-	63684747,63688381,63715402,63724778	63685081,63688493,63715478,63724935	0.555556
testis_male_adult_54_years	chr12	26052978	26052987	26052978	+	High_confidence	5	5	13	0.482716	3.584963	chr12	26052956	26053226	LINE|L1|L1MA10	+	chr12	26052568	26064872	RASSF8|ENST00000545413.1	+	26052568,26055278,26064497	26052602,26055446,26064872	0.538462
testis_male_adult_54_years	chr8	1506613	1506614	1506613	-	High_confidence	70	70	72	2.673505	5.166056	chr8	1506335	1507666	LTR|ERV1|LTR12C	-	chr8	1505813	1506583	STRG.178540.1	-	1505813	1506583	0.916667
testis_male_adult_54_years	chr10	56155130	56155184	56155183	-	High_confidence	34	42	224	8.317570	4.985449	chr10	56154938	56156388	LTR|ERV1|LTR12C	+	chr10	56151217	56155481	STRG.218785.2	-	56151217,56154831	56151995,56155481	0.915179
testis_male_adult_54_years	chr15	57451531	57451598	57451564	+	RAMPAGE_only	8	12	63	2.339317	4.583414	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57440127	57550727	STRG.294899.3	+	57440127,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547351,57549892	57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57548946,57550727	1.000000
testis_male_adult_54_years	chr2	165957398	165957437	165957436	+	High_confidence	32	32	140	5.198482	6.452515	chr2	165956404	165957623	LTR|ERV1|LTR12E	-	chr2	165957429	165992404	STRG.50473.3	+	165957429,165980552,165984616,165992196	165957592,165980766,165984776,165992404	0.514286
testis_male_adult_54_years	chr11	8654544	8654545	8654544	-	RAMPAGE_only	10	11	15	0.556980	3.093069	chr11	8654174	8654581	LINE|L2|L2c	+	chr11	8610131	8666353	STRG.230034.4	-	8610131,8618749,8619382,8620049,8620445,8621031,8621644,8622815,8624358,8624712,8638653,8640226,8643008,8645740,8646446,8647969,8648415,8649739,8651799	8618003,8618968,8619535,8620124,8620572,8621321,8621819,8622876,8624551,8625228,8638815,8641152,8643126,8645887,8646561,8648086,8648548,8649887,8666353	0.933333
testis_male_adult_54_years	chr2	201115951	201116034	201116007	+	High_confidence	3	3	22	0.816904	4.021928	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.863636
testis_male_adult_54_years	chr4	185902943	185902974	185902943	+	RAMPAGE_only	47	48	138	5.124218	6.027717	chr4	185902881	185903118	SINE|MIR|MIR	+	chr4	185905661	185915231	STRG.110090.1	+	185905661,185914974	185905781,185915231	0.688406
testis_male_adult_54_years	chr7	1137406	1137425	1137406	-	High_confidence	5	5	11	0.408452	3.459432	chr7	1137251	1137469	LINE|L2|L2a	+	chr7	997005	1138240	C7orf50|ENST00000397098.7	-	997005,1000469,1009949,1127256,1137314	997804,1000551,1010143,1127386,1138240	0.636364
testis_male_adult_54_years	chr3	9363399	9363419	9363405	+	High_confidence	3	5	14	0.519848	3.392747	chr3	9363443	9363535	LINE|L2|L2b	+	chr3	9363097	9384870	THUMPD3|ENST00000515662.6	+	9363097,9365015,9366907,9371059,9374515,9377818,9380502,9383198,9384211,9384523	9363728,9365320,9366985,9371536,9374646,9377888,9380618,9383309,9384335,9384870	0.928571
testis_male_adult_54_years	chr8	57219617	57219623	57219617	+	High_confidence	2	3	7	0.259924	2.807355	chr8	57219613	57220044	LTR|ERV1|MER50	-	chr8	57219088	57232636	LINC01606|ENST00000519160.5	+	57219088,57219409,57220110,57221398,57222168,57222594,57229544,57231391	57219138,57219623,57220295,57221607,57222271,57222696,57229728,57232636	0.714286
testis_male_adult_54_years	chr1	67141844	67141862	67141844	-	High_confidence	102	107	258	9.580059	6.548917	chr1	67141751	67142227	LTR|ERV1|LTR15	-	chr1	67092947	67141930	STRG.8715.8	-	67092947,67096251,67115351,67125751,67127165,67131141,67141613	67093604,67096321,67115464,67125909,67127257,67131227,67141930	0.930233
testis_male_adult_54_years	chr20	51627601	51627645	51627601	-	RAMPAGE_only	3	3	10	0.371320	3.169925	chr20	51627270	51627593	LINE|L2|L2a	-	chr20	51596513	51768328	ATP9A|ENST00000311637.9	-	51596513,51604816,51607526,51608517,51610100,51613676,51617489,51618661,51618953,51622073,51625191,51627599,51628979,51639342,51656937,51669996,51671114,51674152,51676131,51712965,51725818,51729833,51768301	51601347,51605020,51607584,51608626,51610165,51613832,51617554,51618806,51619043,51622172,51625362,51627683,51629072,51639504,51657150,51670109,51671257,51674313,51676208,51713074,51725932,51729978,51768328	0.900000
testis_male_adult_54_years	chr4	53353465	53353500	53353465	-	High_confidence	52	52	89	3.304749	5.582655	chr4	53353024	53354632	LTR|ERV1|LTR12C	-	chr4	53313188	53353989	STRG.94573.3	-	53313188,53352597,53352946	53313763,53352766,53353989	0.966292
testis_male_adult_54_years	chr7	66401295	66401332	66401295	-	High_confidence	13	13	74	2.747769	5.764858	chr7	66400747	66401247	DNA|hAT-Charlie|MER1A	-	chr7	66376043	66401338	LINC00174|ENST00000421767.1	-	66376043,66382236,66395878,66399691,66400321,66400922,66401194	66380003,66382431,66395956,66399795,66400437,66401027,66401338	0.540541
testis_male_adult_54_years	chr5	68883235	68883244	68883243	+	High_confidence	25	26	66	2.450713	4.849132	chr5	68883040	68883498	LINE|L2|L2a	-	chr5	68883262	68884171	STRG.119088.1	+	68883262	68884171	0.939394
testis_male_adult_54_years	chr19	36643594	36643642	36643605	-	High_confidence	13	15	85	3.156221	5.457699	chr19	36643461	36643909	DNA|hAT-Charlie|Charlie1	+	chr19	36638630	36643607	ZNF461|ENST00000540605.2	-	36638630,36643273	36640043,36643607	0.988235
testis_male_adult_54_years	chr9	99127897	99127909	99127897	+	High_confidence	9	9	24	0.891168	4.523562	chr9	99127861	99128148	LINE|L2|L2a	-	chr9	99127915	99149341	TGFBR1|ENST00000550253.1	+	99127915,99128854,99132508,99137858,99142535,99144731,99146484,99147653,99149179	99128002,99129100,99132739,99138089,99142703,99144888,99146609,99147784,99149341	0.958333
testis_male_adult_54_years	chr8	86694192	86694197	86694192	-	RAMPAGE_only	7	7	16	0.594112	3.875000	chr8	86693462	86695342	Retroposon|SVA|SVA_D	-	chr8	86666926	86671075	STRG.188877.1	-	86666926,86668018,86670943	86667133,86668168,86671075	0.812500
testis_male_adult_54_years	chr5	12574736	12574814	12574736	-	High_confidence	6	6	38	1.411016	4.702565	chr5	12573943	12575033	LTR|ERV1|LTR12C	-	chr5	12530120	12574773	STRG.113104.3	-	12530120,12571815,12574503	12530613,12571904,12574773	0.894737
testis_male_adult_54_years	chr3	175124397	175124418	175124417	+	High_confidence	19	20	64	2.376449	5.129914	chr3	175124288	175124452	LTR|ERVL-MaLR|MLT1L	-	chr3	175124298	175125961	STRG.84133.1	+	175124298	175125961	0.812500
testis_male_adult_54_years	chr1	174190721	174190722	174190721	+	RAMPAGE_only	10	10	10	0.371320	2.646439	chr1	174190471	174191121	DNA|TcMar-Tigger|Tigger1	-	chr1	174159516	174637488	STRG.19979.2	+	174159516,174193597,174219124,174220971,174231144,174241482,174250474,174252479,174272413,174275832,174278612,174304985,174370978,174393994,174637374	174159657,174193684,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145,174637488	1.000000
testis_male_adult_54_years	chr22	40521730	40521747	40521734	-	RAMPAGE_only	5	5	19	0.705508	4.037401	chr22	40521515	40521797	SINE|Alu|AluSx1	-	chr22	40431404	40533811	MRTFA|ENST00000422851.1	-	40431404,40435498,40463220,40519463,40533589	40431480,40435554,40463286,40519612,40533811	0.736842
testis_male_adult_54_years	chr1	224719035	224719036	224719035	-	RAMPAGE_only	4	4	7	0.259924	2.584963	chr1	224718976	224719125	LINE|L2|L2a	+	chr1	224717503	224730662	AL596330.1|ENST00000431691.1	-	224717503,224718943,224730297	224717810,224719108,224730662	0.714286
testis_male_adult_54_years	chr2	230960953	230960959	230960958	-	High_confidence	25	30	46	1.708073	5.075078	chr2	230960613	230961268	LINE|L1|L1MCb	+	chr2	230909865	230961066	GPR55|ENST00000392039.2	-	230909865,230960774	230911096,230961066	0.652174
testis_male_adult_54_years	chr7	21851154	21851208	21851174	+	High_confidence	22	23	165	6.126782	4.901109	chr7	21851065	21851438	LTR|ERVL-MaLR|THE1C	+	chr7	21851161	21902044	STRG.160487.1	+	21851161,21852466,21854314,21861852,21864534,21866469,21867858,21868863,21873273,21880701,21884290,21892424,21894622,21894883,21899335,21899979,21901006	21851320,21852631,21854455,21862023,21864657,21866663,21868007,21868991,21873501,21880893,21884410,21892667,21894805,21894999,21899448,21900120,21902044	0.951515
testis_male_adult_54_years	chr6	17598881	17598946	17598935	-	RAMPAGE_only	6	7	29	1.076828	4.099360	chr6	17598903	17599192	SINE|Alu|AluY	-	chr6	17585219	17600437	STRG.137271.2	-	17585219,17585716,17587675,17591190,17598752	17585393,17585887,17589955,17591258,17600437	0.931034
testis_male_adult_54_years	chr9	85807690	85807700	85807698	+	RAMPAGE_only	8	13	20	0.742640	3.884184	chr9	85807715	85807851	SINE|Alu|FLAM_C	+	chr9	85805358	85811295	STRG.205564.7	+	85805358,85806001	85805894,85811295	0.550000
testis_male_adult_54_years	chr1	173637881	173637977	173637881	+	High_confidence	9	9	72	2.673505	5.793345	chr1	173637824	173638104	LTR|ERV1|HERVIP10B3-int	+	chr1	173637721	173705915	STRG.19894.13	+	173637721,173702912	173683892,173705915	0.875000
testis_male_adult_54_years	chr11	120265927	120265932	120265927	-	High_confidence	3	3	9	0.334188	2.641604	chr11	120265809	120266959	LINE|L2|L2a	+	chr11	120249758	120265932	AP001150.1|ENST00000558822.5	-	120249758,120253583,120254111,120254822,120256011,120261288,120265326,120265865	120250405,120253654,120254174,120254975,120256993,120261319,120265440,120265932	0.555556
testis_male_adult_54_years	chr11	72793487	72793523	72793522	-	High_confidence	4	4	12	0.445584	3.277613	chr11	72793261	72793497	SINE|MIR|MIRb	-	chr11	72755015	72793592	STRG.237269.6	-	72755015,72755700,72757766,72758529,72759233,72780974,72792874	72755070,72755753,72757884,72758633,72759381,72781294,72793592	0.916667
testis_male_adult_54_years	chr1	147517623	147517721	147517623	-	High_confidence	7	7	36	1.336752	4.900712	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147382191	147517875	STRG.16179.4	-	147382191,147470994,147514337,147515520,147517258	147384863,147471128,147514448,147515676,147517875	0.888889
testis_male_adult_54_years	chr20	59470074	59470082	59470081	+	High_confidence	29	29	49	1.819469	4.910660	chr20	59469955	59470534	LTR|ERVL-MaLR|MLT1E2	-	chr20	59470078	59471951	STRG.346800.1	+	59470078,59471472	59470888,59471951	0.959184
testis_male_adult_54_years	chr5	35233658	35233659	35233658	-	High_confidence	27	27	29	1.076828	4.504706	chr5	35233529	35234092	LTR|ERV1|LTR9B	-	chr5	35232073	35233437	STRG.116089.1	-	35232073	35233437	0.931034
testis_male_adult_54_years	chr8	123154775	123154813	123154804	+	High_confidence	7	8	31	1.151092	4.567100	chr8	123154608	123154999	LTR|ERVL|LTR41B	-	chr8	123154882	123155943	STRG.193612.1	+	123154882	123155943	0.935484
testis_male_adult_54_years	chr3	38951614	38951615	38951614	-	High_confidence	14	15	17	0.631244	4.000000	chr3	38950968	38952226	LTR|ERV1|LTR12C	+	chr3	38945400	38952595	STRG.66176.1	-	38945400,38946788,38950095	38945512,38946907,38952595	0.941176
testis_male_adult_54_years	chr15	66524523	66524524	66524523	-	High_confidence	28	36	41	1.522412	4.892407	chr15	66524384	66524562	LINE|L2|L2b	+	chr15	66499322	66524532	RPL4|ENST00000568588.5	-	66499322,66500055,66500292,66500948,66501374,66501787,66502611,66503057,66503357,66505327,66524454	66499652,66500176,66500376,66501105,66501504,66501912,66502750,66503164,66503529,66505748,66524532	0.853659
testis_male_adult_54_years	chr15	84570175	84570192	84570184	-	High_confidence	10	10	20	0.742640	4.142664	chr15	84570009	84570168	SINE|Alu|AluSq10	-	chr15	84526780	84570700	UBE2Q2P1|ENST00000354771.8	-	84526780,84527618,84534179,84538531,84539703,84542146,84546220,84554960,84561959,84570598	84526876,84527667,84534238,84538616,84539788,84542284,84546277,84555070,84562061,84570700	0.750000
testis_male_adult_54_years	chr12	4645561	4645562	4645561	+	High_confidence	11	11	16	0.594112	3.773557	chr12	4645370	4645799	DNA|hAT-Charlie|MER1A	-	chr12	4645495	4648027	AC005832.1|ENST00000544380.1	+	4645495,4647835	4645875,4648027	0.687500
testis_male_adult_54_years	chr16	30499535	30499551	30499550	-	High_confidence	6	6	17	0.631244	3.499228	chr16	30499510	30499629	SINE|MIR|MIR1_Amn	+	chr16	30498765	30499554	AC116348.2|ENST00000563751.1	-	30498765,30499363	30499151,30499554	0.941176
testis_male_adult_54_years	chr19	9836402	9836403	9836402	+	High_confidence	5	6	7	0.259924	2.521641	chr19	9836239	9836466	SINE|MIR|MIR	-	chr19	9835442	9849681	PIN1|ENST00000380889.6	+	9835442,9836354,9838435,9848029,9849089,9849532	9836012,9836875,9838648,9848140,9849195,9849681	1.000000
testis_male_adult_54_years	chr2	131765791	131765828	131765791	+	RAMPAGE_only	4	4	15	0.556980	3.807355	chr2	131765787	131766108	SINE|Alu|AluSx3	+	chr2	131758030	131767107	C2orf27A|ENST00000481510.1	+	131758030,131766618	131758537,131767107	0.533333
testis_male_adult_54_years	chr1	40489092	40489124	40489102	+	RAMPAGE_only	3	3	14	0.519848	3.546594	chr1	40489060	40489147	DNA|TcMar-Tigger|Tigger19b	-	chr1	40477629	40496343	ZFP69|NM_001320179.1	+	40477629,40479035,40481762,40489087,40489528,40494920	40477894,40479488,40481854,40489214,40489624,40496343	0.928571
testis_male_adult_54_years	chr1	1407803	1407832	1407831	-	High_confidence	4	4	14	0.519848	3.238901	chr1	1407717	1407798	SINE|Alu|AluYh9	-	chr1	1401895	1407313	MRPL20|NM_017971.3	-	1401895,1405808,1406908,1407130	1402256,1405886,1407019,1407313	0.928571
testis_male_adult_54_years	chr14	61647382	61647409	61647408	+	High_confidence	6	6	17	0.631244	3.690117	chr14	61647432	61647514	SINE|MIR|MIR3	+	chr14	61647419	61654001	FLJ22447|ENST00000556717.2	+	61647419,61650961,61653622	61647561,61651017,61654001	0.529412
testis_male_adult_54_years	chr1	193130203	193130231	193130230	+	RAMPAGE_only	2	3	8	0.297056	2.807355	chr1	193130278	193132058	LINE|L2|L2a	+	chr1	193122299	193153186	CDC73|ENST00000647662.1	+	193122299,193125111,193130173,193135390,193135536,193138084,193141849,193147866,193150303,193152379,193152967	193122331,193125217,193130243,193135453,193135589,193138173,193142066,193147965,193150382,193152444,193153186	0.750000
testis_male_adult_54_years	chr12	19404031	19404069	19404031	+	High_confidence	15	17	46	1.708073	4.950420	chr12	19403969	19404613	LINE|L1|L1PBb	-	chr12	19404065	19518192	AEBP2|ENST00000541908.5	+	19404065,19462509,19473247,19493799,19500096,19512397,19514670,19518086	19404124,19462717,19473355,19493986,19500221,19512465,19514784,19518192	0.500000
testis_male_adult_54_years	chr16	87292327	87292338	87292327	-	High_confidence	6	6	13	0.482716	3.546594	chr16	87292123	87292641	LTR|ERVL-MaLR|MLT1F	-	chr16	87267257	87292438	AC010531.4|ENST00000569872.1	-	87267257,87291683	87268220,87292438	0.692308
testis_male_adult_54_years	chr6	8165187	8165188	8165187	+	High_confidence	17	17	18	0.668376	3.807764	chr6	8164155	8165373	LTR|ERV1|LTR12C	+	chr6	8165200	8168117	STRG.135778.1	+	8165200,8167813	8166358,8168117	0.944444
testis_male_adult_54_years	chr16	4640803	4640819	4640810	+	RAMPAGE_only	4	5	19	0.705508	3.947703	chr16	4640825	4640929	SINE|MIR|MIR	+	chr16	4650386	4680067	MGRN1|ENST00000590790.5	+	4650386,4651962,4652677,4657245,4664708,4665098,4668264,4671390,4673497,4677462,4680031	4650483,4652051,4652824,4657363,4664775,4665151,4668312,4671459,4673657,4677572,4680067	0.684211
testis_male_adult_54_years	chr6	71686943	71686944	71686943	+	High_confidence	73	73	83	3.081957	5.106351	chr6	71685983	71687370	LTR|ERV1|LTR12C	+	chr6	71686782	71687478	STRG.143913.1	+	71686782	71687478	0.927711
testis_male_adult_54_years	chr9	35729368	35729385	35729383	-	RAMPAGE_only	2	3	8	0.297056	2.807355	chr9	35729297	35729592	LINE|L2|L2b	-	chr9	35707355	35732395	STRG.201892.2	-	35707355,35707730,35708340,35710560,35710796,35710988,35711254,35711594,35712004,35712834,35713195,35713952,35714238,35714573,35714759,35715058,35716389,35717145,35717618,35718811,35719073,35719518,35719739,35720038,35720432,35720811,35721647,35722118,35722860,35723951,35724191,35724571,35724829,35725223,35725564,35726375,35732074	35707488,35707892,35708484,35710683,35710886,35711082,35711394,35711792,35712124,35713043,35713298,35714081,35714373,35714687,35714876,35715187,35716556,35717440,35717786,35718910,35719282,35719627,35719853,35720219,35720509,35720913,35721803,35722223,35722921,35724079,35724334,35724724,35724959,35725321,35725727,35729399,35732395	0.875000
testis_male_adult_54_years	chr3	126394480	126394581	126394528	-	High_confidence	5	6	26	0.965432	4.019471	chr3	126394363	126394538	DNA|hAT-Charlie|MER5A	-	chr3	126393032	126394397	CCDC37-DT|ENST00000511287.5	-	126393032,126394298	126393293,126394397	0.730769
testis_male_adult_54_years	chr14	45042458	45042459	45042458	+	RAMPAGE_only	5	5	8	0.297056	2.521641	chr14	45042399	45042568	LINE|L1|L1MD	+	chr14	44962238	45074431	TOGARAM1|ENST00000361462.6	+	44962238,44995745,44999362,45004060,45006007,45008912,45011974,45025782,45027298,45028175,45032222,45043685,45044634,45046544,45052435,45054430,45066577,45068423,45071711,45073295	44964467,44995902,44999497,45004366,45006267,45009145,45012075,45025872,45027474,45028329,45032376,45043791,45044870,45046703,45052562,45054549,45066767,45068643,45071798,45074431	0.500000
testis_male_adult_54_years	chr21	32308707	32308730	32308707	-	High_confidence	41	54	118	4.381577	6.198320	chr21	32308651	32308918	LTR|ERVL-MaLR|MLT1M	+	chr21	32306463	32308737	AP000266.1|ENST00000450936.1	-	32306463,32308518	32306826,32308737	0.610169
testis_male_adult_54_years	chr7	96358407	96358422	96358407	-	High_confidence	4	4	9	0.334188	2.947703	chr7	96358348	96359121	LTR|ERV1|LTR17	-	chr7	96351594	96358683	STRG.169235.1	-	96351594,96358148	96351676,96358683	0.777778
testis_male_adult_54_years	chr13	36735053	36735060	36735057	-	RAMPAGE_only	55	56	182	6.758026	6.359393	chr13	36734887	36735240	LTR|ERVL-MaLR|MLT1A	-	chr13	36682192	36708927	STRG.266282.1	-	36682192,36698286,36699923,36701459,36706573	36682286,36698442,36700020,36701591,36708927	0.516484
testis_male_adult_54_years	chr11	73598929	73598963	73598934	-	High_confidence	4	4	21	0.779772	4.165894	chr11	73598878	73599293	LINE|L1|L1ME4a	+	chr11	73400477	73598189	FAM168A|NM_015159.2	-	73400477,73407512,73409486,73411393,73419873,73430689,73468404,73597922	73406744,73407643,73409661,73411536,73419999,73430770,73468492,73598189	0.571429
testis_male_adult_54_years	chr6	28654539	28654571	28654539	-	High_confidence	14	17	43	1.596676	4.832923	chr6	28654396	28654668	DNA|TcMar-Tigger|Tigger3b	+	chr6	28648384	28654574	STRG.139084.1	-	28648384,28654431	28649066,28654574	0.837209
testis_male_adult_54_years	chr13	71483061	71483088	71483061	-	High_confidence	88	88	218	8.094778	5.450939	chr13	71482793	71483101	SINE|Alu|AluSq2	-	chr13	71475021	71483072	STRG.271202.5	-	71475021,71475705,71479168,71483033	71475209,71475849,71479316,71483072	0.963303
testis_male_adult_54_years	chr14	70255732	70255772	70255732	+	High_confidence	4	4	18	0.668376	3.734522	chr14	70255023	70256182	LTR|ERV1|LTR12C	+	chr14	70255590	70266631	STRG.285167.2	+	70255590,70265459	70256189,70266631	0.888889
testis_male_adult_54_years	chr1	239255171	239255172	239255171	-	High_confidence	199	199	247	9.171607	5.502205	chr1	239254761	239256061	LTR|ERV1|LTR12D	-	chr1	239247807	239255286	STRG.27765.2	-	239247807,239253229,239254756	239250943,239253335,239255286	0.894737
testis_male_adult_54_years	chr14	38948245	38948246	38948245	-	High_confidence	9	9	9	0.334188	3.169925	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	0.777778
testis_male_adult_54_years	chr7	152553903	152553937	152553936	+	RAMPAGE_only	9	10	26	0.965432	4.623517	chr7	152553719	152554084	LTR|ERVL-MaLR|MSTA	+	chr7	152576163	152577120	STRG.177431.1	+	152576163	152577120	0.500000
testis_male_adult_54_years	chr10	82232864	82232895	82232869	-	High_confidence	9	9	32	1.188224	4.736297	chr10	82232701	82233082	LTR|ERVL|MER74B	-	chr10	82230129	82232919	NRG3-AS1|ENST00000448936.2	-	82230129,82232479,82232739	82230365,82232618,82232919	0.687500
testis_male_adult_54_years	chr2	94770259	94770260	94770259	-	RAMPAGE_only	4	4	7	0.259924	2.807355	chr2	94769555	94770303	LTR|ERVL-MaLR|MSTA-int	-	chr2	94768616	94778672	STRG.42131.1	-	94768616	94778672	1.000000
testis_male_adult_54_years	chr1	4411974	4411997	4411991	-	High_confidence	6	8	27	1.002564	4.315824	chr1	4411693	4412409	LTR|ERV1|MER50	-	chr1	4411075	4411978	STRG.577.1	-	4411075	4411978	0.592593
testis_male_adult_54_years	chr15	75626287	75626305	75626304	-	High_confidence	9	9	18	0.668376	3.101881	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.944444
testis_male_adult_54_years	chr11	77357710	77357711	77357710	-	RAMPAGE_only	10	11	12	0.445584	3.188722	chr11	77357584	77357761	SINE|MIR|MIRc	+	chr11	77355704	77474060	STRG.237996.8	-	77355704,77356506,77374327,77379240,77379893,77392330,77473551	77355842,77359017,77374365,77379388,77379994,77392541,77474060	0.750000
testis_male_adult_54_years	chrX	135768190	135768191	135768190	-	High_confidence	56	62	67	2.487845	5.476064	chrX	135767891	135768249	LTR|ERVL|LTR41	-	chrX	135760156	135768191	CT45A3|ENST00000598716.2	-	135760156,135761633,135762107,135764275,135768107	135760409,135761727,135762356,135764450,135768191	0.970149
testis_male_adult_54_years	chr2	96638004	96638094	96638059	-	High_confidence	6	6	32	1.188224	4.506891	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96631337	96638060	KANSL3|ENST00000475820.1	-	96631337,96636920,96637948	96631543,96637185,96638060	0.593750
testis_male_adult_54_years	chr16	14976731	14976732	14976731	+	High_confidence	26	30	31	1.151092	4.573557	chr16	14976610	14976830	DNA|hAT-Charlie|MER20	+	chr16	14976762	15017387	PDXDC1|ENST00000567306.5	+	14976762,14997752,14998339,15001775,15004186,15006393,15009680,15016128,15017119,15017320	14976904,14997826,14998405,15001856,15004333,15006583,15009759,15016213,15017168,15017387	0.870968
testis_male_adult_54_years	chr3	80770689	80770722	80770701	+	High_confidence	2	2	13	0.482716	3.418296	chr3	80770587	80770950	LTR|ERV1|LTR1A2	-	chr3	80770362	80778517	STRG.71257.1	+	80770362	80778517	0.538462
testis_male_adult_54_years	chr2	155231277	155231314	155231277	+	High_confidence	16	18	56	2.079393	5.253434	chr2	155231098	155231402	SINE|Alu|AluY	+	chr2	155231125	155242454	STRG.48950.2	+	155231125,155241761	155231450,155242454	0.821429
testis_male_adult_54_years	chr12	31119075	31119107	31119106	-	High_confidence	2	2	8	0.297056	2.500000	chr12	31119084	31119883	LINE|L1|L1MDa	-	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	1.000000
testis_male_adult_54_years	chr21	40705593	40705596	40705595	-	High_confidence	12	19	23	0.854036	4.152391	chr21	40705426	40705791	LTR|ERVL-MaLR|THE1D	-	chr21	40347655	40705575	STRG.352014.2	-	40347655,40353464,40369098,40692809,40705508	40347945,40353743,40369245,40692956,40705575	0.956522
testis_male_adult_54_years	chr1	162510377	162510381	162510380	-	High_confidence	3	4	7	0.259924	2.521641	chr1	162510092	162511168	LINE|L1|L1MA6	-	chr1	162509175	162510356	STRG.18280.1	-	162509175,162510281	162509340,162510356	0.571429
testis_male_adult_54_years	chr8	26854868	26854895	26854868	+	High_confidence	8	8	31	1.151092	3.922772	chr8	26854799	26855121	LTR|ERVL-MaLR|MLT1A0	+	chr8	26854786	26858999	STRG.181744.1	+	26854786,26858353,26858692	26854982,26858435,26858999	0.806452
testis_male_adult_54_years	chr5	111667003	111667027	111667026	+	RAMPAGE_only	11	11	26	0.965432	4.501629	chr5	111666789	111667105	LTR|ERV1|MER61A	-	chr5	111512225	111739726	STARD4-AS1|NR_040093.1	+	111512225,111669418,111727944,111728536,111729490,111731780,111738303	111512508,111669635,111728066,111728760,111729680,111734846,111739726	0.653846
testis_male_adult_54_years	chr20	52671797	52671824	52671823	+	RAMPAGE_only	12	12	26	0.965432	4.469670	chr20	52671788	52671916	SINE|MIR|MIRb	+	chr20	52674410	52681578	AL031674.1|ENST00000413070.1	+	52674410,52675209,52677019,52681404	52674511,52675310,52677108,52681578	0.538462
testis_male_adult_54_years	chr6	37784860	37784920	37784887	+	High_confidence	27	28	79	2.933429	5.647268	chr6	37784646	37784908	LTR|ERVL|LTR33	-	chr6	37784573	37801945	STRG.140743.1	+	37784573,37801265	37785324,37801945	0.974684
testis_male_adult_54_years	chr2	138601598	138601634	138601629	+	High_confidence	11	11	46	1.708073	5.058303	chr2	138601420	138601828	LTR|ERVL-MaLR|MLT1C	+	chr2	138601619	138604373	STRG.47066.2	+	138601619,138604063	138602441,138604373	0.695652
testis_male_adult_54_years	chr10	45154812	45154835	45154834	+	High_confidence	7	7	13	0.482716	3.546594	chr10	45154827	45155261	DNA|hAT-Charlie|MER1A	+	chr10	45154708	45163908	STRG.217597.1	+	45154708,45156777,45162111	45154844,45157182,45163908	0.923077
testis_male_adult_54_years	chr15	28849714	28849736	28849714	-	RAMPAGE_only	2	2	6	0.222792	2.584963	chr15	28848959	28850697	Retroposon|SVA|SVA_D	-	chr15	28841832	28848675	GOLGA6L7|ENST00000567390.6	-	28841832,28843733,28844204,28845528,28845717,28845899,28846219,28847063,28848498	28843440,28843875,28844263,28845635,28845811,28845950,28846249,28847192,28848675	0.666667
testis_male_adult_54_years	chr12	32391133	32391150	32391133	+	High_confidence	3	3	13	0.482716	2.873141	chr12	32390329	32391256	LTR|ERV1|LTR12D	-	chr12	32390821	32391417	STRG.251228.1	+	32390821	32391417	0.538462
testis_male_adult_54_years	chr3	197899949	197899958	197899957	-	RAMPAGE_only	3	4	6	0.222792	2.584963	chr3	197899702	197901148	LINE|L1|L1M1	+	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	1.000000
testis_male_adult_54_years	chr17	74112901	74112902	74112901	-	High_confidence	100	100	109	4.047389	5.746312	chr17	74112609	74113873	LTR|ERV1|LTR12E	-	chr17	74051176	74112899	STRG.321911.2	-	74051176,74091021,74106879,74112645	74064414,74091176,74106981,74112899	0.798165
testis_male_adult_54_years	chr17	71131299	71131300	71131299	-	RAMPAGE_only	4	4	7	0.259924	2.584963	chr17	71131111	71132457	LINE|L1|L1P3	-	chr17	71097774	71202177	CASC17|ENST00000569074.1	-	71097774,71132389,71185595,71202103	71099618,71132470,71185655,71202177	0.571429
testis_male_adult_54_years	chr7	124015705	124015731	124015730	+	High_confidence	6	11	23	0.854036	3.975418	chr7	124015702	124015932	LTR|ERVL-MaLR|MLT1A0	-	chr7	124015749	124016053	STRG.173008.1	+	124015749	124016053	0.739130
testis_male_adult_54_years	chr22	41583996	41584010	41583996	-	RAMPAGE_only	3	3	8	0.297056	2.521641	chr22	41583835	41583953	SINE|MIR|MIRc	-	chr22	41576902	41585402	PMM1|ENST00000482178.5	-	41576902,41577807,41578805,41583958,41584526	41577440,41577923,41578881,41584372,41585402	0.750000
testis_male_adult_54_years	chr8	83403738	83403739	83403738	+	High_confidence	22	22	23	0.854036	4.277613	chr8	83402757	83404051	LTR|ERV1|LTR12C	+	chr8	83403730	83404076	STRG.188053.1	+	83403730	83404076	0.782609
testis_male_adult_54_years	chr1	23987803	23987810	23987805	-	High_confidence	22	40	61	2.265053	5.019205	chr1	23987325	23987827	DNA|hAT-Charlie|MER1A	-	chr1	23987413	23987829	STRG.2879.1	-	23987413	23987829	0.803279
testis_male_adult_54_years	chr17	19659552	19659576	19659575	+	RAMPAGE_only	12	13	35	1.299620	4.957854	chr17	19659562	19659866	SINE|Alu|AluJb	+	chr17	19658205	19675742	STRG.315017.14	+	19658205,19663332,19664947,19671720,19675495,19675561	19661268,19663499,19665047,19671956,19675499,19675742	0.800000
testis_male_adult_54_years	chrX	283491	283508	283507	+	High_confidence	3	3	8	0.297056	3.000000	chrX	283275	283557	LTR|ERV1|LTR9B	-	chrX	283478	291629	PLCXD1|ENST00000447472.6	+	283478,284166,288732,290647,291498	283520,284314,288869,290776,291629	0.625000
testis_male_adult_54_years	chr1	116297620	116297625	116297622	-	High_confidence	41	65	97	3.601805	4.659647	chr1	116297200	116298543	LTR|ERV1|LTR12C	-	chr1	116297269	116297621	STRG.15160.1	-	116297269	116297621	0.783505
testis_male_adult_54_years	chr15	24513662	24513712	24513662	+	RAMPAGE_only	3	6	23	0.854036	4.201841	chr15	24513608	24513895	SINE|Alu|AluJo	-	chr15	24533694	24587777	PWRN1|ENST00000568045.5	+	24533694,24535679,24566655,24568530,24569782,24570031,24574509,24574906,24587566	24533952,24535806,24566800,24568563,24569809,24570128,24574813,24575003,24587777	0.565217
testis_male_adult_54_years	chr1	165215940	165215959	165215940	+	High_confidence	2	3	10	0.371320	3.169925	chr1	165215756	165215980	SINE|MIR|MIRb	+	chr1	165215979	165219104	AL390730.2|ENST00000441773.1	+	165215979,165218592	165216141,165219104	0.800000
testis_male_adult_54_years	chr2	109700596	109700597	109700596	+	High_confidence	6	6	9	0.334188	3.000000	chr2	109700231	109700693	LTR|ERV1|MER4A1	-	chr2	109700592	109701231	STRG.43877.2	+	109700592,109701101	109700890,109701231	0.666667
testis_male_adult_54_years	chr11	43881406	43881429	43881406	+	High_confidence	5	5	12	0.445584	3.277613	chr11	43881273	43881408	DNA|hAT-Charlie|MER5A	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.833333
testis_male_adult_54_years	chr7	130830408	130830425	130830424	+	RAMPAGE_only	3	3	9	0.334188	2.500000	chr7	130830296	130830500	LTR|ERVL-MaLR|MLT1A	-	chr7	130789410	130834336	STRG.173923.4	+	130789410,130832581	130792038,130834336	0.888889
testis_male_adult_54_years	chr2	212429184	212429219	212429218	-	High_confidence	11	12	28	1.039696	4.532665	chr2	212428936	212429403	LTR|ERVL|LTR33	-	chr2	211750698	212429247	ERBB4|ENST00000435846.1	-	211750698,211788024,211947429,212124751,212429158	211750704,211788159,211947616,212124903,212429247	0.607143
testis_male_adult_54_years	chr6	155997406	155997447	155997427	+	High_confidence	78	78	362	13.441788	6.565776	chr6	155997396	155997692	LINE|L1|HAL1	+	chr6	155997413	155999534	STRG.154775.1	+	155997413	155999534	0.955801
testis_male_adult_54_years	chr1	9191047	9191060	9191047	+	High_confidence	4	6	12	0.445584	3.277613	chr1	9190766	9191145	LINE|L2|L2a	+	chr1	9191047	9191967	LNCTAM34A|ENST00000634966.1	+	9191047,9191392	9191124,9191967	0.833333
testis_male_adult_54_years	chr14	71598230	71598231	71598230	+	High_confidence	4	4	7	0.259924	2.584963	chr14	71598255	71598752	LINE|L1|L1MC4a	+	chr14	71598233	71739341	SIPA1L1|ENST00000537413.5	+	71598233,71618756,71624047,71650334,71658332,71661309,71671118,71672347,71685361,71698980,71702380,71705221,71709221,71723646,71724669,71730054,71733665,71735276,71738243,71739017	71598331,71618887,71624236,71650509,71658436,71661467,71671692,71672622,71685631,71699127,71702505,71705340,71709664,71723886,71724835,71730301,71733812,71735391,71738325,71739341	0.571429
testis_male_adult_54_years	chr4	184343954	184343958	184343957	-	RAMPAGE_only	7	7	18	0.668376	3.852169	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184340755	184353977	LINC02363|ENST00000317596.3	-	184340755,184350088,184353312	184342053,184350278,184353977	0.500000
testis_male_adult_54_years	chr11	91269659	91269660	91269659	+	High_confidence	35	35	35	1.299620	3.721163	chr11	91268573	91270074	LTR|ERV1|LTR12C	+	chr11	91269665	91270056	STRG.238693.1	+	91269665	91270056	0.914286
testis_male_adult_54_years	chr17	75914465	75914478	75914465	-	High_confidence	6	6	15	0.556980	3.521641	chr17	75914426	75914585	SINE|MIR|MIRb	+	chr17	75914034	75915043	FBF1|ENST00000593076.1	-	75914034,75914121,75915016	75914050,75914932,75915043	0.666667
testis_male_adult_54_years	chr11	17276134	17276144	17276134	+	High_confidence	4	4	10	0.371320	2.947703	chr11	17276076	17276152	SINE|MIR|MIR3	+	chr11	17276010	17331524	NUCB2|ENST00000533773.5	+	17276010,17282788,17295323,17296103,17301743,17309571,17310824,17311192,17311871,17312027,17315385,17317583,17330126,17330901,17331411	17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17317706,17330297,17330983,17331524	0.700000
testis_male_adult_54_years	chr6	84219823	84219845	84219844	-	RAMPAGE_only	3	3	11	0.408452	3.459432	chr6	84219730	84220102	LINE|L2|L2c	-	chr6	84124240	84227596	CEP162|ENST00000257766.8	-	84124240,84126377,84146686,84149561,84152544,84155297,84160811,84161745,84163143,84169327,84171605,84174047,84174726,84175213,84185186,84186331,84193608,84194883,84200788,84201736,84203980,84212956,84215281,84215775,84217798,84221056,84227579	84125276,84126512,84146785,84149703,84153179,84155510,84160916,84161909,84163270,84169433,84171718,84174188,84174954,84175347,84185448,84186623,84193690,84195075,84200905,84201767,84204096,84213024,84215465,84215922,84217860,84221171,84227596	0.909091
testis_male_adult_54_years	chr3	121788316	121788358	121788316	-	RAMPAGE_only	11	11	35	1.299620	4.843569	chr3	121788145	121788280	SINE|MIR|MIRc	-	chr3	121769993	121835034	IQCB1|ENST00000349820.10	-	121769993,121772556,121781742,121788283,121790072,121807343,121808915,121826050,121828469,121828860,121834390,121834965	121770574,121772713,121781874,121788432,121790215,121807443,121809009,121826180,121828632,121828972,121834479,121835034	1.000000
testis_male_adult_54_years	chr16	64343941	64343964	64343963	+	RAMPAGE_only	18	19	72	2.673505	5.515669	chr16	64343711	64345204	LTR|ERV1|LTR12C	+	chr16	64342719	64365196	STRG.307931.1	+	64342719,64343505,64351734,64364778	64342732,64344392,64351844,64365196	0.763889
testis_male_adult_54_years	chr10	35250554	35250598	35250566	+	RAMPAGE_only	17	17	54	2.005129	4.875077	chr10	35250433	35250615	DNA|hAT-Charlie|MER5A	+	chr10	35247048	35530036	CCNY|ENST00000493157.6	+	35247048,35248108,35250521,35434112,35455356,35483403,35501500,35516522,35525963,35529972	35247130,35248211,35250626,35434220,35455463,35483478,35501535,35516623,35525999,35530036	0.777778
testis_male_adult_54_years	chr14	81170392	81170420	81170413	-	High_confidence	14	23	58	2.153657	5.063000	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.879310
testis_male_adult_54_years	chr12	4590058	4590120	4590098	+	High_confidence	26	27	136	5.049954	6.312092	chr12	4589956	4590135	SINE|MIR|MIR	-	chr12	4590098	4597173	DYRK4|ENST00000536157.5	+	4590098,4590329,4591159,4593001,4596148,4596588	4590207,4590554,4591298,4593165,4596445,4597173	0.801471
testis_male_adult_54_years	chr1	199959641	199959686	199959685	-	High_confidence	12	12	46	1.708073	4.898456	chr1	199959486	199960727	LTR|ERV1|LTR12C	+	chr1	199946501	199960074	STRG.22744.3	-	199946501,199959254	199948611,199960074	0.673913
testis_male_adult_54_years	chr16	67415962	67416015	67415992	+	RAMPAGE_only	4	4	24	0.891168	4.142915	chr16	67415897	67416018	LINE|L2|L2b	+	chr16	67425387	67425625	STRG.308508.1	+	67425387	67425625	0.583333
testis_male_adult_54_years	chr10	68906237	68906249	68906237	+	RAMPAGE_only	2	2	7	0.259924	2.584963	chr10	68906269	68906366	SINE|MIR|MIRb	+	chr10	68901316	68913230	DDX50|ENST00000471475.1	+	68901316,68906225,68906710,68910306,68911067,68913161	68901471,68906337,68907007,68910382,68911246,68913230	0.857143
testis_male_adult_54_years	chr8	30674929	30674934	30674933	-	RAMPAGE_only	7	7	18	0.668376	3.947703	chr8	30674863	30675318	LTR|ERVL-MaLR|MLT1H1	+	chr8	30578317	30658251	GTF2E2|ENST00000355904.8	-	30578317,30580280,30607056,30612298,30614607,30635031,30653432,30657972	30579037,30580396,30607150,30612481,30614715,30635123,30653602,30658251	0.555556
testis_male_adult_54_years	chr9	128185554	128185559	128185554	-	RAMPAGE_only	6	6	10	0.371320	2.947703	chr9	128185400	128185541	SINE|MIR|MIR3	-	chr9	128166151	128190710	CIZ1|ENST00000415526.5	-	128166151,128166758,128167094,128169051,128169405,128170019,128176350,128177565,128178368,128178708,128180414,128180720,128185546,128190328,128190687	128166406,128166880,128167164,128169201,128169519,128170107,128176475,128177763,128178490,128179415,128180523,128180799,128185776,128190444,128190710	0.900000
testis_male_adult_54_years	chr13	50397418	50397419	50397418	+	High_confidence	109	110	111	4.121653	4.825693	chr13	50396411	50397833	LTR|ERV1|LTR12C	+	chr13	50397418	50654079	DLEU1|ENST00000647700.1	+	50397418,50415088,50425577,50433412,50648592,50653710	50397896,50415202,50425729,50433550,50648643,50654079	0.954955
testis_male_adult_54_years	chr2	61408855	61408868	61408867	-	RAMPAGE_only	8	9	13	0.482716	3.418296	chr2	61408613	61408916	SINE|Alu|AluSz	+	chr2	61187454	61470714	USP34|NM_014709.3	-	61187454,61188909,61190270,61190517,61192900,61203139,61204255,61204496,61206016,61206759,61208898,61211771,61214059,61220309,61221501,61222618,61223059,61223247,61227066,61228644,61228826,61229547,61232451,61235844,61236025,61236160,61236324,61241559,61241765,61245209,61246323,61248510,61256383,61256872,61257051,61257203,61259710,61265396,61265983,61278164,61278387,61280243,61281089,61283144,61283408,61284874,61288676,61293463,61294948,61295167,61296799,61300950,61301353,61311539,61311783,61314584,61314874,61317653,61319172,61325374,61331275,61333881,61339350,61339565,61343814,61347869,61348755,61349249,61350259,61350567,61370320,61370497,61378362,61380168,61383268,61394852,61395182,61405707,61420745,61470649	61188709,61189069,61190414,61190658,61192980,61203263,61204380,61204601,61206124,61206886,61208977,61211929,61214694,61220457,61221606,61222663,61223164,61223296,61227218,61228719,61228995,61229633,61232532,61235910,61236073,61236236,61236389,61241655,61241819,61245288,61246477,61248683,61256478,61256950,61257108,61257350,61259776,61265557,61266167,61278285,61278443,61280348,61281242,61283269,61283449,61284957,61288877,61293550,61295032,61295290,61296925,61301160,61301454,61311687,61311910,61314744,61314974,61317767,61319327,61325457,61331371,61333971,61339478,61339681,61344029,61348480,61348886,61349285,61350389,61350693,61370413,61370579,61378424,61380361,61383336,61395002,61395233,61406128,61420833,61470714	0.923077
testis_male_adult_54_years	chr19	50556715	50556741	50556715	-	High_confidence	3	3	15	0.556980	3.906891	chr19	50556522	50556743	LINE|L2|L2a	+	chr19	50516891	50556703	STRG.338362.1	-	50516891,50517660,50548541,50556534	50517555,50519415,50548873,50556703	0.933333
testis_male_adult_54_years	chr2	174062499	174062502	174062501	-	High_confidence	4	6	9	0.334188	3.169925	chr2	174062291	174062486	LTR|ERVL-MaLR|MLT1L	-	chr2	174057116	174062644	STRG.51404.1	-	174057116,174060801,174061917,174062403	174057350,174060931,174062034,174062644	0.666667
testis_male_adult_54_years	chr8	57222038	57222065	57222038	+	RAMPAGE_only	2	2	7	0.259924	2.584963	chr8	57221845	57222203	LTR|ERV1|MER50	-	chr8	57219088	57232636	LINC01606|ENST00000519160.5	+	57219088,57219409,57220110,57221398,57222168,57222594,57229544,57231391	57219138,57219623,57220295,57221607,57222271,57222696,57229728,57232636	0.714286
testis_male_adult_54_years	chr12	109572015	109572016	109572015	-	RAMPAGE_only	9	9	9	0.334188	3.169925	chr12	109571984	109572200	SINE|MIR|MIRb	-	chr12	109556753	109573480	MMAB|ENST00000541763.6	-	109556753,109559095,109561039,109561419,109561779,109565118,109568769,109571648,109573346	109557136,109559155,109561329,109561517,109561852,109565176,109568863,109571710,109573480	0.777778
testis_male_adult_54_years	chr9	36264878	36264883	36264882	+	High_confidence	16	16	28	1.039696	4.494680	chr9	36264623	36265392	LTR|ERV1|LTR17	+	chr9	36264503	36265746	STRG.201985.6	+	36264503	36265746	0.857143
testis_male_adult_54_years	chr8	83693508	83693512	83693511	-	High_confidence	7	7	15	0.556980	3.589898	chr8	83693224	83694519	LTR|ERV1|LTR12C	-	chr8	83693112	83693495	STRG.188097.3	-	83693112	83693495	0.866667
testis_male_adult_54_years	chr6	139323746	139323792	139323788	-	High_confidence	3	3	11	0.408452	3.277613	chr6	139323664	139323762	LTR|ERVL-MaLR|MLT1M	-	chr6	139240069	139323996	STRG.153263.2	-	139240069,139244594,139247816,139255563,139260317,139262578,139270455,139276829,139288475,139292228,139323726	139243314,139244690,139247909,139255638,139260437,139262773,139270626,139276921,139288913,139292461,139323996	0.909091
testis_male_adult_54_years	chr22	30598185	30598223	30598185	+	High_confidence	13	13	22	0.816904	4.021928	chr22	30596678	30598399	LTR|ERV1|LTR12C	+	chr22	30597845	30627005	STRG.355626.4	+	30597845,30601793,30610870,30612872,30615300,30615600,30617329,30622967,30626459	30598426,30607395,30611063,30614501,30615473,30615787,30617495,30623083,30627005	0.909091
testis_male_adult_54_years	chr7	150323740	150323751	150323750	-	High_confidence	4	4	8	0.297056	2.521641	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	0.750000
testis_male_adult_54_years	chr8	63465814	63465833	63465832	+	High_confidence	14	15	30	1.113960	4.615061	chr8	63465770	63465957	SINE|Alu|AluSg7	+	chr8	63465848	63475482	LOC102724612|NR_125825.1	+	63465848,63467141,63472369,63475347	63465997,63469946,63472502,63475482	1.000000
testis_male_adult_54_years	chr3	16606113	16606114	16606113	-	High_confidence	12	12	12	0.445584	3.418296	chr3	16605956	16606074	LINE|L2|L2a	-	chr3	16586791	16605499	DAZL|ENST00000399444.6	-	16586791,16592049,16593654,16594532,16595313,16596749,16596987,16597489,16598086,16598451,16605202	16588713,16592148,16593768,16594583,16595385,16596889,16597051,16597541,16598178,16598598,16605499	1.000000
testis_male_adult_54_years	chr13	54940064	54940093	54940092	+	High_confidence	8	8	13	0.482716	3.584963	chr13	54939085	54941418	LTR|ERV1|HERVFH21-int	-	chr13	54940842	54986719	AL390964.1|ENST00000622486.4	+	54940842,54941967,54952300,54979309,54980380,54986219	54940880,54942055,54952393,54979391,54980424,54986719	0.615385
testis_male_adult_54_years	chrX	129493048	129493058	129493057	-	RAMPAGE_only	3	3	9	0.334188	3.000000	chrX	129492703	129493323	LINE|L1|L1ME4a	+	chrX	129446845	129523405	SMARCA1|ENST00000371121.4	-	129446845,129448332,129465519,129465843,129468772,129471203,129480700,129481074,129487017,129488936,129490059,129491940,129493039,129496749,129497844,129499731,129504733,129506079,129507940,129511803,129515686,129515893,129516330,129518360,129523196	129447233,129448443,129465732,129465962,129468905,129471326,129480814,129481185,129487137,129489085,129490192,129492093,129493075,129496871,129498071,129499841,129504802,129506211,129508096,129511983,129515787,129515994,129516497,129518447,129523405	0.777778
testis_male_adult_54_years	chr3	84918869	84918898	84918869	-	RAMPAGE_only	2	2	7	0.259924	2.521641	chr3	84918410	84919532	Retroposon|SVA|SVA_C	+	chr3	84868127	84881679	LINC00971|ENST00000491849.1	-	84868127,84868597,84868781,84881488	84868255,84868668,84868843,84881679	0.571429
testis_male_adult_54_years	chr1	119082546	119082568	119082567	-	High_confidence	3	3	6	0.222792	2.584963	chr1	119082453	119082600	SINE|MIR|MIRb	-	chr1	119034128	119082541	WARS2|ENST00000497402.1	-	119034128,119042263,119045581,119076349,119082339	119034213,119042349,119045662,119076607,119082541	1.000000
testis_male_adult_54_years	chr1	89128404	89128444	89128404	+	RAMPAGE_only	4	4	23	0.854036	4.262692	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89148587	89179600	STRG.12030.1	+	89148587,89149331,89179318	89148680,89149546,89179600	0.695652
testis_male_adult_54_years	chr7	7477792	7477793	7477792	-	High_confidence	156	156	181	6.720894	6.188707	chr7	7477477	7479105	LTR|ERV1|LTR12C	-	chr7	7357209	7477803	STRG.157690.2	-	7357209,7360389,7370724,7372997,7375460,7380659,7380781,7381543,7417858,7419884,7432472,7432631,7436394,7437393,7440789,7443584,7444417,7452318,7453439,7456043,7474600,7477111,7477513	7358805,7360528,7370882,7373546,7375497,7380695,7380862,7381612,7417927,7419953,7432541,7432700,7436463,7437462,7440861,7443653,7444489,7452387,7453508,7456112,7474669,7477180,7477803	0.900552
testis_male_adult_54_years	chr9	131126070	131126101	131126070	+	High_confidence	6	6	34	1.262488	4.253212	chr9	131126006	131126132	SINE|MIR|MIRb	-	chr9	131126079	131129311	NUP214|ENST00000531584.1	+	131126079,131126411,131127523,131128331,131129278	131126194,131126460,131127719,131128483,131129311	0.794118
testis_male_adult_54_years	chr16	31118789	31118790	31118789	+	RAMPAGE_only	4	4	6	0.222792	2.584963	chr16	31118415	31118797	LINE|L2|L2c	+	chr16	31117696	31131359	STRG.306693.4	+	31117696,31120185,31120338,31127188,31128049,31130016,31130266,31130455,31130745,31131194	31117892,31120260,31127088,31127353,31128139,31130157,31130360,31130606,31130900,31131359	1.000000
testis_male_adult_54_years	chr3	107716401	107716455	107716424	+	High_confidence	7	8	43	1.596676	5.036616	chr3	107716216	107716424	LINE|L2|L2c	-	chr3	107716458	107728936	BBX|ENST00000497629.1	+	107716458,107728764	107716849,107728936	0.674419
testis_male_adult_54_years	chr13	26013346	26013350	26013349	+	RAMPAGE_only	5	5	9	0.334188	3.000000	chr13	26013392	26013701	SINE|Alu|AluSq2	+	chr13	25469020	26020287	ATP8A2|ENST00000255283.9	+	25469020,25529998,25530561,25532271,25533272,25537987,25540318,25541918,25543290,25551337,25553792,25554990,25558972,25559720,25563955,25570766,25571609,25571712,25699167,25769045,25774848,25828117,25837162,25839545,25860194,25860803,25862300,25961574,25968574,26012530,26019887	25469121,25530098,25530660,25532317,25533313,25538061,25540388,25542046,25543402,25551503,25553920,25555068,25559061,25559765,25564031,25570872,25571710,25571776,25699345,25769229,25774959,25828192,25837285,25839624,25860256,25860860,25862408,25961663,25968679,26012622,26020287	0.888889
testis_male_adult_54_years	chr13	27680582	27680596	27680584	-	High_confidence	18	38	71	2.636373	5.559968	chr13	27680543	27681024	LTR|ERVL|ERVL-E-int	-	chr13	27667539	27680566	AL136439.1|ENST00000611364.1	-	27667539,27678353,27680513	27667752,27678949,27680566	0.704225
testis_male_adult_54_years	chr9	17607178	17607204	17607203	+	RAMPAGE_only	5	5	18	0.668376	3.947703	chr9	17607100	17607475	DNA|TcMar-Tigger|Tigger3c	-	chr9	17579122	17797129	SH3GL2|ENST00000380607.4	+	17579122,17747065,17761436,17786380,17787379,17789391,17791230,17793366,17795543	17579287,17747134,17761509,17786524,17787513,17789550,17791334,17793497,17797129	0.888889
testis_male_adult_54_years	chr10	46292715	46292751	46292715	+	High_confidence	1	1	8	0.297056	2.807355	chr10	46292607	46292872	LINE|L2|L2c	-	chr10	46292809	46294110	ANTXRL|ENST00000610892.1	+	46292809,46293828	46293100,46294110	0.625000
testis_male_adult_54_years	chr6	34720149	34720158	34720153	-	RAMPAGE_only	2	2	8	0.297056	2.521641	chr6	34719459	34720428	LTR|ERVK|LTR5_Hs	-	chr6	34587279	34696850	C6orf106|NM_024294.3	-	34587279,34606554,34646600,34654624,34696445	34590600,34606904,34646798,34654779,34696850	0.500000
testis_male_adult_54_years	chr4	98929970	98930043	98930015	-	High_confidence	53	53	298	11.065339	6.462724	chr4	98929972	98930125	SINE|MIR|MIR	+	chr4	98878455	98930635	EIF4E|NM_001130679.1	-	98878455,98884921,98886453,98887078,98887888,98891236,98901875,98929094	98881142,98885061,98886546,98887192,98887952,98891332,98901982,98930635	0.993289
testis_male_adult_54_years	chr3	54179	54192	54179	+	High_confidence	2	2	10	0.371320	3.169925	chr3	54192	54678	DNA|TcMar-Tigger|Tigger7	+	chr3	54070	70018	STRG.60323.1	+	54070,67324,67626,69847	54592,67513,68012,70018	0.900000
testis_male_adult_54_years	chr11	123469402	123469434	123469414	+	High_confidence	9	11	46	1.708073	4.871388	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123469255	123600547	STRG.244082.6	+	123469255,123480815,123577366,123584311,123594081,123594734,123595941,123600467	123469478,123480893,123577577,123584332,123594166,123594838,123596037,123600547	0.652174
testis_male_adult_54_years	chr11	13708076	13708077	13708076	+	RAMPAGE_only	7	7	8	0.297056	2.807355	chr11	13708123	13708382	SINE|Alu|AluSx3	+	chr11	13710723	13732341	STRG.230744.7	+	13710723,13712965,13714144,13727555,13728611	13712046,13713033,13721859,13727683,13732341	0.875000
testis_male_adult_54_years	chr9	103991824	103991833	103991832	-	High_confidence	5	6	9	0.334188	2.750000	chr9	103991730	103992136	LTR|ERV1|MER57D	-	chr9	103984571	103991825	STRG.208000.2	-	103984571	103991825	0.555556
testis_male_adult_54_years	chr18	36064546	36064575	36064546	-	RAMPAGE_only	6	6	15	0.556980	3.521641	chr18	36064074	36065175	LTR|ERV1|LTR12D	+	chr18	35989823	36067530	RPRD1A|ENST00000590898.5	-	35989823,35993101,36026899,36027183,36030807,36030990,36033707,36040806,36067253	35990595,35993300,36027075,36027310,36030905,36031097,36033837,36040865,36067530	0.866667
testis_male_adult_54_years	chr9	86256023	86256055	86256050	-	High_confidence	21	21	73	2.710637	5.573118	chr9	86255911	86256604	DNA|hAT-Charlie|Charlie25	-	chr9	86220264	86256033	C9orf153|NM_001276368.1	-	86220264,86227854,86229537,86237081,86255986	86221733,86228030,86229629,86237160,86256033	0.575342
testis_male_adult_54_years	chr4	169697625	169697631	169697625	+	RAMPAGE_only	4	4	8	0.297056	2.807355	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169662721	169723183	CLCN3|ENST00000504131.6	+	169662721,169663113,169663526,169680049,169687657,169689042,169690529,169692113,169695611,169697188,169703997,169706867,169713078,169719906	169662738,169663114,169663617,169680207,169687757,169689230,169690652,169692320,169695692,169697734,169704184,169707266,169713295,169723183	0.750000
testis_male_adult_54_years	chr15	56443437	56443448	56443447	-	RAMPAGE_only	7	7	12	0.445584	3.459432	chr15	56442919	56443421	LINE|L1|L1MEf	-	chr15	56428730	56465137	MNS1|NM_018365.2	-	56428730,56431372,56434137,56443429,56443637,56444443,56446840,56456393,56464025,56464969	56429193,56431498,56434395,56443537,56443854,56444673,56446943,56456521,56464247,56465137	0.916667
testis_male_adult_54_years	chr10	109700025	109700075	109700049	+	High_confidence	29	30	145	5.384142	6.031116	chr10	109699722	109700622	LTR|ERV1|LTR12D	+	chr10	109700049	109701241	STRG.225715.1	+	109700049	109701241	0.979310
testis_male_adult_54_years	chr5	91091631	91091632	91091631	+	High_confidence	8	8	12	0.445584	3.459432	chr5	91091618	91092014	LTR|ERVL|MLT2B1	-	chr5	91091616	91164226	ADGRV1|ENST00000639212.1	+	91091616,91092619,91102218,91150029,91153220,91163781	91091792,91092673,91102340,91150221,91153398,91164226	0.583333
testis_male_adult_54_years	chr13	100404006	100404012	100404008	+	RAMPAGE_only	5	8	14	0.519848	3.700440	chr13	100403932	100405766	LTR|ERV1|MER61-int	-	chr13	100368471	100530432	PCCA|ENST00000458283.5	+	100368471,100425632,100449251,100527674,100530097	100368574,100425731,100449305,100527752,100530432	0.500000
testis_male_adult_54_years	chr10	103140151	103140221	103140151	-	High_confidence	6	6	39	1.448148	4.668913	chr10	103139920	103140218	SINE|Alu|AluJo	-	chr10	103099925	103140192	NT5C2|ENST00000487810.5	-	103099925,103101044,103101234,103105705,103106588,103111744,103139405,103140116	103100019,103101102,103101326,103105801,103106706,103111805,103139479,103140192	0.717949
testis_male_adult_54_years	chr1	241855465	241855518	241855493	+	RAMPAGE_only	16	16	59	2.190789	5.135754	chr1	241854717	241856139	LTR|ERV1|LTR12C	-	chr1	241850491	241860704	EXO1|ENST00000469419.1	+	241850491,241852291,241857344,241858505,241860516	241850586,241852411,241857482,241858718,241860704	0.864407
testis_male_adult_54_years	chr10	125698623	125698650	125698649	+	RAMPAGE_only	4	4	12	0.445584	3.418296	chr10	125698627	125698767	DNA|TcMar-Tigger|Tigger19b	-	chr10	125715919	125717781	STRG.227779.4	+	125715919	125717781	0.833333
testis_male_adult_54_years	chrX	20038353	20038396	20038353	-	RAMPAGE_only	5	5	13	0.482716	3.392747	chrX	20037206	20039536	LTR|ERVL|HERVL-int	+	chrX	20021347	20025943	MAP7D2|ENST00000466145.1	-	20021347,20024950,20025680	20021549,20025083,20025943	1.000000
testis_male_adult_54_years	chr14	55255242	55255278	55255242	-	High_confidence	22	24	78	2.896297	4.933581	chr14	55255169	55255312	DNA|hAT-Blackjack|MER63A	+	chr14	55243041	55255478	STRG.282373.1	-	55243041,55255014	55249411,55255478	0.858974
testis_male_adult_54_years	chr12	110844453	110844457	110844453	+	RAMPAGE_only	10	10	16	0.594112	3.506891	chr12	110844230	110844473	LTR|ERVL-MaLR|MLT1L	-	chr12	110831778	110845963	AC002375.1|ENST00000551161.1	+	110831778,110845598	110831994,110845963	0.687500
testis_male_adult_54_years	chr13	63738150	63738187	63738186	+	High_confidence	24	24	67	2.487845	5.097524	chr13	63737818	63738351	LTR|ERV1|HERVE-int	-	chr13	63738110	63742569	STRG.270366.4	+	63738110,63740765,63742351	63740243,63740909,63742569	0.925373
testis_male_adult_54_years	chrX	149946974	149946988	149946974	+	High_confidence	2	2	7	0.259924	2.584963	chrX	149946977	149947028	LINE|L2|L2c	+	chrX	149947370	149964241	STRG.370857.5	+	149947370,149947534,149960764	149947430,149948394,149964241	0.714286
testis_male_adult_54_years	chr1	114853702	114853716	114853702	+	RAMPAGE_only	4	4	9	0.334188	3.000000	chr1	114853575	114853887	SINE|Alu|AluSz	-	chr1	114854802	114995370	SYCP1|NM_001282541.1	+	114854802,114855437,114856572,114857231,114857443,114858546,114859742,114860735,114874505,114876068,114876736,114878093,114885534,114886124,114887625,114895447,114910396,114911478,114913032,114913974,114923448,114926277,114926500,114944338,114944871,114946288,114947245,114977556,114981335,114984724,114994697,114994881	114855018,114855572,114856657,114857275,114857497,114858711,114859810,114860809,114874564,114876138,114876810,114878202,114885629,114886309,114887693,114895509,114910501,114911582,114913150,114914045,114923530,114926340,114926563,114944455,114944982,114946381,114947320,114977616,114981512,114984868,114994787,114995370	0.777778
testis_male_adult_54_years	chr7	74728012	74728028	74728027	+	High_confidence	11	11	37	1.373884	4.939183	chr7	74728017	74728331	SINE|Alu|AluSz6	+	chr7	74728002	74735513	GTF2I|ENST00000491325.5	+	74728002,74728785,74730228,74732478,74733922,74735460	74728068,74728896,74730294,74732662,74733981,74735513	0.567568
testis_male_adult_54_years	chr16	12271182	12271197	12271182	+	RAMPAGE_only	25	28	75	2.784901	5.452426	chr16	12271105	12271599	LTR|ERVL-MaLR|MLT1F2	-	chr16	12129696	12527397	SNX29|ENST00000564791.5	+	12129696,12199600,12277932,12356162,12398445,12403447,12477718,12524701,12526549	12129758,12199683,12278036,12356279,12398501,12403529,12477859,12524841,12527397	0.626667
testis_male_adult_54_years	chr7	51402963	51403001	51402963	-	High_confidence	5	5	18	0.668376	3.794653	chr7	51402672	51402974	SINE|Alu|AluY	-	chr7	51388429	51403093	STRG.164092.1	-	51388429,51393108,51394924,51395853,51401600,51402527	51392715,51393307,51395115,51395976,51401685,51403093	0.777778
testis_male_adult_54_years	chr3	11634237	11634295	11634237	-	RAMPAGE_only	4	5	31	1.151092	4.651084	chr3	11634009	11634538	LINE|L2|L2	+	chr3	11559350	11627406	VGLL4|ENST00000458499.5	-	11559350,11564796,11601832,11626356,11627315	11559455,11565019,11602022,11626513,11627406	0.709677
testis_male_adult_54_years	chr11	124076494	124076519	124076511	+	High_confidence	4	5	20	0.742640	3.787144	chr11	124074506	124076546	LTR|ERV1|MER52D	-	chr11	124075784	124078284	STRG.244130.1	+	124075784	124078284	0.850000
testis_male_adult_54_years	chr15	40694830	40694875	40694830	+	High_confidence	2	2	12	0.445584	3.277613	chr15	40694880	40694966	Retroposon|SVA|SVA_A	+	chr15	40695128	40732158	RAD51|NM_002875.4	+	40695128,40698756,40701063,40706176,40709024,40718804,40728710,40729504,40729852,40731054	40695425,40698845,40701201,40706294,40709116,40718899,40728824,40729634,40729974,40732158	0.833333
testis_male_adult_54_years	chr2	180692008	180692009	180692008	+	High_confidence	111	111	157	5.829726	5.218245	chr2	180691204	180692425	LTR|ERV1|LTR12C	+	chr2	180691926	180724996	STRG.52286.1	+	180691926,180724595	180692441,180724996	0.955414
testis_male_adult_54_years	chr2	208255765	208255775	208255774	-	High_confidence	4	4	9	0.334188	2.750000	chr2	208255694	208256010	SINE|Alu|AluJb	-	chr2	208236741	208255797	STRG.56721.1	-	208236741,208239070,208239862,208241993,208243426,208245318,208248368,208251429,208253885,208254938,208255528	208237169,208239233,208240003,208242145,208243604,208245424,208248660,208251567,208253959,208255059,208255797	0.777778
testis_male_adult_54_years	chr15	83609368	83609411	83609389	+	High_confidence	8	8	40	1.485280	4.382344	chr15	83609249	83609484	DNA|TcMar-Tigger|Tigger15a	+	chr15	83609402	83618305	SH3GL3|ENST00000467735.2	+	83609402,83611417,83618081	83609466,83611587,83618305	0.925000
testis_male_adult_54_years	chr7	69394113	69394136	69394135	-	High_confidence	7	8	15	0.556980	3.906891	chr7	69393647	69395028	LTR|ERV1|LTR12C	+	chr7	69388224	69394237	STRG.164982.1	-	69388224,69393639	69388333,69394237	0.866667
testis_male_adult_54_years	chr14	66578185	66578186	66578185	+	RAMPAGE_only	4	6	7	0.259924	2.584963	chr14	66578142	66581223	LINE|L1|L1M1	+	chr14	66574522	66587442	STRG.284600.1	+	66574522	66587442	0.857143
testis_male_adult_54_years	chr21	44818773	44818810	44818773	-	High_confidence	43	45	175	6.498102	5.990898	chr21	44818658	44818746	SINE|MIR|MIR	-	chr21	44805616	44818779	SUMO3|ENST00000479153.1	-	44805616,44809046,44813975,44818668	44807040,44809118,44814104,44818779	0.971429
testis_male_adult_54_years	chr2	19468997	19469030	19469020	+	High_confidence	4	4	16	0.594112	3.702820	chr2	19468897	19469356	LTR|ERVL-MaLR|MLT1G1	-	chr2	19469020	19505808	LINC01808|ENST00000641932.1	+	19469020,19475450,19479096,19480317,19487311,19488367,19505359	19469430,19475612,19479284,19480425,19487515,19488489,19505808	0.875000
testis_male_adult_54_years	chr7	55394064	55394081	55394080	+	RAMPAGE_only	4	5	9	0.334188	2.750000	chr7	55394012	55394150	DNA|hAT-Charlie|MER5B	+	chr7	55366110	55431528	LANCL2|ENST00000452107.6	+	55366110,55379646,55391792,55398422,55399956,55401173,55411906,55425253,55428374,55431225	55366229,55379833,55391910,55398630,55400104,55401320,55412089,55425430,55428447,55431528	0.555556
testis_male_adult_54_years	chr12	97761909	97761961	97761909	-	RAMPAGE_only	34	35	72	2.673505	5.753258	chr12	97761840	97762291	LTR|ERV1|MER4C	+	chr12	97713411	97753598	AC007424.1|ENST00000552582.5	-	97713411,97719183,97733164,97740341,97746964,97747259,97753276	97713831,97719290,97733400,97740567,97747069,97747484,97753598	0.500000
testis_male_adult_54_years	chr2	168906586	168906616	168906611	+	RAMPAGE_only	10	10	31	1.151092	4.128079	chr2	168906533	168906611	SINE|MIR|MIR3	-	chr2	168902948	168908695	G6PC2|ENST00000461586.1	+	168902948,168904504,168907567	168902992,168904616,168908695	0.935484
testis_male_adult_54_years	chr5	178562725	178562733	178562725	-	High_confidence	34	35	79	2.933429	5.760039	chr5	178562581	178563141	LTR|ERV1|LTR12F	-	chr5	178306604	178562725	STRG.133773.4	-	178306604,178560681,178561730	178306919,178560748,178562725	0.696203
testis_male_adult_54_years	chr13	54799942	54799999	54799998	+	RAMPAGE_only	4	5	12	0.445584	3.459432	chr13	54799141	54800235	LTR|ERV1|LTR12E	-	chr13	54797051	54898514	STRG.268884.1	+	54797051,54800654,54898223	54800259,54800815,54898514	0.583333
testis_male_adult_54_years	chr3	8679903	8679913	8679903	-	RAMPAGE_only	6	7	11	0.408452	3.321928	chr3	8679701	8680302	LTR|ERV1|HERVE-int	+	chr3	8619594	8682071	SSUH2|ENST00000317371.8	-	8619594,8623548,8625541,8626228,8627697,8629663,8630804,8632048,8633665,8635299,8635758,8639947,8658924,8663743,8670997,8671893,8677205,8679704,8681890	8620014,8623656,8625647,8626321,8627783,8629726,8630929,8632109,8633941,8635381,8635857,8640069,8659013,8663802,8671153,8672035,8677353,8679849,8682071	0.636364
testis_male_adult_54_years	chr15	69072937	69072938	69072937	+	High_confidence	29	29	42	1.559544	4.631305	chr15	69072763	69073273	LTR|ERVL-MaLR|MLT1F1	+	chr15	69072937	69074866	EWSAT1|ENST00000559914.1	+	69072937,69074583	69073190,69074866	0.880952
testis_male_adult_54_years	chr3	112302414	112302484	112302483	+	High_confidence	66	68	184	6.832290	6.899339	chr3	112302478	112303209	LTR|ERV1|HERV3-int	+	chr3	112302365	112308863	STRG.74637.1	+	112302365,112306913	112302714,112308863	0.500000
testis_male_adult_54_years	chr4	83486806	83486832	83486827	+	RAMPAGE_only	23	35	100	3.713201	4.965313	chr4	83486716	83487011	LTR|ERV1|MER39	-	chr4	83535913	83605875	GPAT3|NM_001256422.1	+	83535913,83536503,83544535,83581561,83587254,83588209,83590198,83594844,83596857,83597429,83598050,83598643,83604667	83536017,83536763,83544602,83581832,83587329,83588299,83590292,83594960,83596913,83597515,83598179,83598723,83605875	0.810000
testis_male_adult_54_years	chr3	114070781	114070819	114070818	+	RAMPAGE_only	3	3	11	0.408452	3.121928	chr3	114070853	114071307	LINE|L2|L2	+	chr3	114066244	114088349	STRG.74934.3	+	114066244,114067986,114070625,114076742,114079905,114082676,114082962,114085672	114066283,114068063,114070838,114076942,114080057,114082794,114083003,114088349	0.909091
testis_male_adult_54_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	29	29	29	1.076828	3.978334	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
testis_male_adult_54_years	chr9	113444715	113444742	113444715	+	High_confidence	3	4	11	0.408452	3.459432	chr9	113444680	113444776	SINE|MIR|MIRb	-	chr9	113444728	113597743	RGS3|NM_144488.5	+	113444728,113460244,113461706,113462020,113479490,113483058,113484137,113485624,113495785,113497313,113498024,113505441,113506387,113507286,113508540,113514457,113517540,113522929,113529220,113536795,113583449,113591332,113594429,113594918,113595598,113596767	113444927,113460336,113461860,113462201,113479541,113483117,113484232,113485693,113495846,113497404,113498080,113505523,113506493,113507638,113508580,113514654,113517624,113523041,113529264,113536918,113584427,113591397,113594531,113594980,113595765,113597743	1.000000
testis_male_adult_54_years	chr2	13357283	13357284	13357283	+	RAMPAGE_only	6	7	9	0.334188	3.000000	chr2	13356535	13358482	LINE|L1|L1MA2	+	chr2	13402674	13403062	STRG.30861.1	+	13402674	13403062	0.777778
testis_male_adult_54_years	chr4	74881174	74881229	74881228	+	High_confidence	84	88	508	18.863062	7.082383	chr4	74881040	74881816	LINE|L2|L2b	-	chr4	74881174	74888822	STRG.96239.1	+	74881174,74886436	74881621,74888822	0.881890
testis_male_adult_54_years	chr20	44465351	44465352	44465351	-	High_confidence	7	7	11	0.408452	3.321928	chr20	44465011	44465338	LTR|ERVL|LTR16A1	-	chr20	44448800	44465349	LINC01620|ENST00000372910.5	-	44448800,44452022,44462223,44465164	44449054,44452173,44462282,44465349	0.727273
testis_male_adult_54_years	chr12	82805178	82805194	82805178	+	High_confidence	8	8	18	0.668376	4.087463	chr12	82804878	82805466	LTR|ERV1|LTR10C	-	chr12	82804534	82815904	STRG.257360.1	+	82804534,82814247	82805200,82815904	0.666667
testis_male_adult_54_years	chr14	58395671	58395732	58395731	-	High_confidence	9	10	39	1.448148	4.701944	chr14	58395684	58395822	SINE|MIR|MIRb	+	chr14	58370022	58395641	AL139021.2|ENST00000556390.1	-	58370022,58395300	58370080,58395641	0.641026
testis_male_adult_54_years	chr16	11587459	11587469	11587468	-	High_confidence	3	4	8	0.297056	3.000000	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
testis_male_adult_54_years	chr4	175238566	175238607	175238590	-	High_confidence	8	9	31	1.151092	4.696132	chr4	175238587	175238730	DNA|TcMar-Tigger|Tigger3b	+	chr4	175237831	175238575	STRG.108923.4	-	175237831	175238575	0.580645
testis_male_adult_54_years	chr7	17900170	17900198	17900191	-	High_confidence	58	83	295	10.953943	7.249539	chr7	17899106	17901898	LINE|L1|L1M1	-	chr7	17888155	17900106	SNX13|ENST00000492626.5	-	17888155,17891545,17893331,17897333,17897843,17898826	17890484,17891635,17893434,17897446,17897884,17900106	0.922034
testis_male_adult_54_years	chr8	87971105	87971161	87971131	-	High_confidence	6	6	45	1.670940	4.925421	chr8	87970972	87972345	LTR|ERV1|LTR12C	+	chr8	87964161	87971634	STRG.188386.1	-	87964161,87970930	87964284,87971634	0.777778
testis_male_adult_54_years	chrX	153057035	153057042	153057035	+	High_confidence	7	9	16	0.594112	3.240224	chrX	153056996	153058067	LTR|Gypsy|MamGyp-int	+	chrX	153057035	153058467	PNMA3|ENST00000593810.2	+	153057035	153058467	0.937500
testis_male_adult_54_years	chr4	116515208	116515209	116515208	-	High_confidence	10	10	12	0.445584	3.095795	chr4	116514721	116516445	LTR|ERV1|MER50-int	-	chr4	116489363	116515146	AC106892.1|ENST00000491608.2	-	116489363,116490073,116501667,116514444,116515112	116489473,116490151,116501762,116514533,116515146	0.583333
testis_male_adult_54_years	chr12	110067693	110067705	110067693	-	High_confidence	6	11	21	0.779772	3.787144	chr12	110067591	110067675	SINE|Alu|AluSp	-	chr12	110041159	110067695	C12orf76|ENST00000309050.9	-	110041159,110057188,110058987,110065859,110067489	110042459,110057296,110059163,110066033,110067695	0.714286
testis_male_adult_54_years	chr11	29618775	29618809	29618808	+	High_confidence	8	8	23	0.854036	4.186704	chr11	29618471	29618837	LTR|ERVL-MaLR|MLT1B	-	chr11	29618801	29630664	LINC02546|ENST00000528119.1	+	29618801,29622634,29630363	29618859,29623076,29630664	0.652174
testis_male_adult_54_years	chr20	16605477	16605539	16605538	+	High_confidence	10	11	30	1.113960	4.415061	chr20	16605342	16605890	LTR|ERVL-MaLR|MLT1G	+	chr20	16605508	16606328	STRG.342171.1	+	16605508	16606328	0.933333
testis_male_adult_54_years	chr5	107494248	107494262	107494248	-	RAMPAGE_only	4	4	12	0.445584	3.277613	chr5	107494065	107495517	LTR|ERV1|LTR12C	+	chr5	107376888	107427514	EFNA5|ENST00000611503.4	-	107376888,107387234,107387705,107427216	107381376,107387315,107387771,107427514	0.500000
testis_male_adult_54_years	chr7	64643169	64643198	64643169	+	High_confidence	12	12	20	0.742640	3.932138	chr7	64643191	64643239	SINE|Alu|AluJb	+	chr7	64642359	64663510	STRG.165353.2	+	64642359,64655165	64643431,64663510	0.750000
testis_male_adult_54_years	chr15	65517256	65517295	65517256	-	High_confidence	64	65	390	14.481484	6.625728	chr15	65517021	65517261	SINE|MIR|MIRc	+	chr15	65442462	65517273	DPP8|ENST00000341861.9	-	65442462,65450998,65451959,65454262,65456224,65463760,65466677,65467070,65474208,65478879,65480221,65481514,65485098,65487689,65490188,65497863,65500605,65507242,65512294,65515655	65447006,65451110,65452102,65454415,65456371,65463906,65466813,65467223,65474288,65479039,65480399,65481615,65485160,65487818,65490299,65498032,65500779,65507355,65512564,65517273	0.982051
testis_male_adult_54_years	chr1	33870924	33870977	33870976	+	High_confidence	4	4	11	0.408452	3.121928	chr1	33870690	33871171	LTR|ERVL-MaLR|MLT1F2	+	chr1	33870225	33893748	STRG.3894.4	+	33870225,33870871,33873544,33878169,33882162,33884569,33888956,33893506	33870494,33871008,33875592,33878350,33882234,33884814,33889130,33893748	0.909091
testis_male_adult_54_years	chr1	88892533	88892534	88892533	-	High_confidence	28	28	28	1.039696	4.566109	chr1	88892399	88892769	LTR|ERV1|MER51A	-	chr1	88852637	88891618	GTF2B|NM_001514.5	-	88852637,88857205,88859881,88860139,88863980,88887260,88891482	88853346,88857487,88860011,88860286,88864114,88887367,88891618	0.678571
testis_male_adult_54_years	chr13	73574522	73574525	73574522	+	RAMPAGE_only	3	3	6	0.222792	2.584963	chr13	73574307	73575299	Retroposon|SVA|SVA_F	+	chr13	73564243	73588070	LINC00392|ENST00000430033.1	+	73564243,73587338,73587679	73564302,73587445,73588070	0.500000
testis_male_adult_54_years	chr8	121666890	121666891	121666890	-	High_confidence	76	77	89	3.304749	4.459490	chr8	121666488	121667976	LTR|ERV1|LTR12C	-	chr8	121666409	121666883	STRG.193512.1	-	121666409	121666883	0.921348
testis_male_adult_54_years	chr4	15548412	15548418	15548412	+	RAMPAGE_only	6	6	10	0.371320	3.169925	chr4	15548459	15548554	SINE|MIR|MIR	+	chr4	15550737	15557373	CC2D2A|ENST00000512202.1	+	15550737,15553157,15555071,15557303	15550980,15553305,15555210,15557373	0.700000
testis_male_adult_54_years	chr6	11933086	11933144	11933086	-	High_confidence	8	11	62	2.302185	4.957834	chr6	11932842	11934427	LTR|ERV1|LTR12C	+	chr6	11932669	11933073	STRG.136192.1	-	11932669	11933073	0.758065
testis_male_adult_54_years	chr14	102235458	102235481	102235458	-	High_confidence	21	22	57	2.116525	4.495142	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.894737
testis_male_adult_54_years	chr6	128398128	128398153	128398152	-	High_confidence	4	4	14	0.519848	3.392747	chr6	128398008	128398465	LTR|ERV1|MER51A	-	chr6	127999986	128397617	PTPRK|ENST00000531050.5	-	127999986,128001195,128003196,128005083,128006025,128008045,128009129,128064757,128067518,128078812,128082436,128083714,128089689,128184431,128218921,128240034,128242520,128397565	128000330,128001207,128003232,128005244,128006055,128008087,128009268,128064794,128067792,128078918,128082638,128083824,128089992,128184725,128219096,128240150,128242602,128397617	0.714286
testis_male_adult_54_years	chr20	23030862	23030898	23030862	+	High_confidence	7	7	18	0.668376	3.905765	chr20	23030836	23031021	DNA|hAT-Charlie|MER3	+	chr20	23030884	23031196	STRG.342835.1	+	23030884	23031196	0.833333
testis_male_adult_54_years	chr12	28412855	28412892	28412855	+	RAMPAGE_only	17	17	71	2.636373	5.393429	chr12	28412490	28412917	LTR|ERV1|LTR12F	-	chr12	28450397	28484229	CCDC91|ENST00000535212.1	+	28450397,28452477,28484051	28450418,28452654,28484229	0.788732
testis_male_adult_54_years	chr9	108885810	108885840	108885839	-	RAMPAGE_only	4	5	8	0.297056	3.000000	chr9	108885603	108886256	LTR|ERVL|MER76	-	chr9	108867516	108893083	ELP1|ENST00000495759.5	-	108867516,108874894,108875632,108877994,108878622,108879445,108880051,108881704,108882124,108889331,108891202,108892985	108869182,108874970,108875735,108878149,108878750,108879557,108880165,108881765,108882187,108889393,108891404,108893083	0.875000
testis_male_adult_54_years	chr1	93505517	93505536	93505517	+	RAMPAGE_only	6	6	11	0.408452	3.321928	chr1	93505214	93505777	LTR|ERV1|LTR10C	-	chr1	93498131	93554659	STRG.12653.2	+	93498131,93522081,93522887,93523343,93524260,93529651,93530754,93532921,93534704,93544106,93546841,93547346,93549277,93550946,93552408	93499583,93522135,93523091,93523491,93524323,93529756,93530883,93533068,93534908,93544216,93546974,93547441,93549426,93551105,93554659	0.909091
testis_male_adult_54_years	chr18	26157774	26157789	26157774	+	RAMPAGE_only	8	10	23	0.854036	4.368523	chr18	26157550	26157809	LINE|RTE-X|L4_B_Mam	-	chr18	26140085	26193355	PSMA8|ENST00000612461.1	+	26140085,26144558,26151857,26158121,26178829,26179067,26192318	26140109,26144685,26151982,26158244,26178949,26179130,26193355	0.521739
testis_male_adult_54_years	chr11	131067569	131067586	131067569	+	High_confidence	147	148	279	10.359831	6.349656	chr11	131067554	131069044	LTR|ERVL|ERV3-16A3_I-int	+	chr11	131067526	131067947	STRG.245145.1	+	131067526	131067947	0.620072
testis_male_adult_54_years	chr11	122556711	122556756	122556731	-	High_confidence	18	18	104	3.861729	5.952974	chr11	122556640	122557789	LTR|ERV1|LTR12D	+	chr11	122154754	122556721	MIR100HG|ENST00000533109.6	-	122154754,122180335,122292283,122293306,122539478,122553938,122556403	122155632,122180398,122292403,122293606,122539506,122554025,122556721	0.644231
testis_male_adult_54_years	chr11	108115134	108115151	108115150	-	High_confidence	5	5	12	0.445584	3.459432	chr11	108114900	108115232	LTR|ERVL-MaLR|MLT1A0	+	chr11	108113452	108116049	STRG.242036.1	-	108113452,108113877	108113785,108116049	0.916667
testis_male_adult_54_years	chr8	57217526	57217640	57217639	+	RAMPAGE_only	14	14	80	2.970561	5.579627	chr8	57216995	57217711	LTR|ERV1|MER50	-	chr8	57193619	57220236	STRG.184749.4	+	57193619,57193884,57210733,57212877,57215108,57218269,57220110	57193689,57206354,57212583,57214932,57217976,57219623,57220236	0.500000
testis_male_adult_54_years	chr13	44456257	44456271	44456263	-	RAMPAGE_only	17	17	66	2.450713	5.538910	chr13	44456064	44456586	LTR|ERV1|LTR12	-	chr13	44432142	44474301	TSC22D1|NM_001243798.1	-	44432142,44436043,44474217	44434883,44436095,44474301	0.696970
testis_male_adult_54_years	chr7	143395647	143395680	143395679	-	High_confidence	16	16	38	1.411016	3.879203	chr7	143395678	143395774	LINE|L2|L2b	+	chr7	143394209	143395601	EPHA1|ENST00000465208.5	-	143394209,143394807,143395120,143395318	143394343,143395014,143395182,143395601	0.973684
testis_male_adult_54_years	chr13	88345515	88345550	88345515	+	High_confidence	14	15	45	1.670940	5.119522	chr13	88344729	88345965	LTR|ERV1|LTR12E	-	chr13	88345533	88346180	STRG.273504.1	+	88345533	88346180	0.733333
testis_male_adult_54_years	chr17	7291603	7291612	7291611	-	RAMPAGE_only	7	7	12	0.445584	3.095795	chr17	7291562	7291737	DNA|hAT-Charlie|MER5A	-	chr17	7288262	7293935	YBX2|ENST00000571834.5	-	7288262,7288748,7289529,7289967,7290250,7291092,7293474,7293827	7288643,7288838,7289725,7290071,7290535,7292059,7293538,7293935	0.916667
testis_male_adult_54_years	chr7	16502503	16502530	16502503	-	RAMPAGE_only	8	9	31	1.151092	4.453881	chr7	16501688	16502649	LTR|ERV1|LTR1D	+	chr7	16461542	16530580	SOSTDC1|ENST00000396652.1	-	16461542,16464315,16465463,16496379,16530186	16462963,16464387,16465857,16496509,16530580	0.548387
testis_male_adult_54_years	chr11	93674444	93674457	93674450	+	RAMPAGE_only	6	6	17	0.631244	3.219528	chr11	93674414	93674539	SINE|Alu|AluJr	+	chr11	93661649	93730356	CEP295|NM_033395.1	+	93661649,93666681,93667606,93668807,93669676,93675570,93679411,93683558,93683963,93687643,93691682,93691926,93695496,93696319,93696681,93702459,93702775,93706744,93721311,93721953,93723040,93724253,93725650,93726975,93728680,93729433,93729613,93729869,93730048,93730230	93661774,93666815,93667807,93668932,93669770,93675666,93679552,93683742,93684128,93687865,93691775,93692030,93695634,93696417,93700186,93702637,93702919,93706897,93721412,93722050,93723289,93724375,93725831,93727637,93728821,93729530,93729781,93729969,93730148,93730356	0.705882
testis_male_adult_54_years	chr20	5187059	5187060	5187059	-	High_confidence	93	107	128	4.752897	6.433799	chr20	5187035	5187598	DNA|hAT-Charlie|Charlie1a	+	chr20	5182730	5187363	STRG.341145.1	-	5182730,5186653	5183123,5187363	0.570312
testis_male_adult_54_years	chr12	18500762	18500763	18500762	+	High_confidence	78	78	85	3.156221	4.806328	chr12	18500000	18501178	LTR|ERV1|LTR12C	+	chr12	18500523	18690300	STRG.249062.1	+	18500523,18503280,18505291,18538155,18546322,18562702,18563376,18566948,18594493,18609534,18640428,18690243	18501188,18503417,18505461,18538312,18546432,18562892,18563498,18567057,18594569,18609629,18640554,18690300	0.964706
testis_male_adult_54_years	chr5	34685691	34685714	34685711	+	High_confidence	53	56	193	7.166478	6.703629	chr5	34685587	34685738	SINE|MIR|MIR3	+	chr5	34685699	34808620	RAI14|ENST00000508315.5	+	34685699,34686871,34757467,34795938,34803711,34807799,34808583	34685814,34686955,34757598,34796027,34803776,34807857,34808620	0.689119
testis_male_adult_54_years	chr1	45786914	45786922	45786919	+	RAMPAGE_only	2	2	6	0.222792	2.584963	chr1	45786816	45786924	LTR|ERVL-MaLR|MLT1J	-	chr1	45803606	46036124	MAST2|NM_001324320.1	+	45803606,45824432,45829438,45882363,45959385,45997723,46000958,46002804,46006240,46008295,46010729,46019595,46021949,46022909,46023232,46023771,46025676,46027730,46028767,46029465,46029830,46030128,46030606,46031006,46031390,46032177,46032595,46033801,46034072,46034537	45804072,45824580,45829581,45882395,45959477,45997799,46000979,46002883,46006395,46008371,46010939,46019697,46022082,46022971,46023318,46023980,46025815,46027863,46028933,46029567,46029953,46030238,46030761,46031290,46031585,46032404,46032718,46033938,46034266,46036124	0.666667
testis_male_adult_54_years	chr7	48708319	48708327	48708319	+	High_confidence	2	3	7	0.259924	2.584963	chr7	48708130	48708556	LTR|ERVL|MER70B	-	chr7	48708326	48711582	AC091770.2|ENST00000649656.1	+	48708326,48708794,48711156	48708703,48708914,48711582	0.714286
testis_male_adult_54_years	chr14	23093716	23093744	23093725	-	RAMPAGE_only	19	19	103	3.824597	6.034511	chr14	23093682	23093875	SINE|MIR|MIRc	-	chr14	23058566	23095153	ACIN1|ENST00000605057.5	-	23058566,23061083,23061297,23062167,23062415,23062928,23063435,23064104,23064354,23065965,23069475,23078150,23078819,23079546,23081747,23089981,23090521,23093478,23094974	23059474,23061184,23061622,23062275,23062523,23063074,23063577,23064257,23064488,23066008,23069617,23078266,23079038,23080809,23081836,23090101,23090633,23093544,23095153	0.961165
testis_male_adult_54_years	chrX	135893349	135893383	135893381	-	High_confidence	7	9	18	0.668376	3.734522	chrX	135893277	135893550	LTR|ERVL|LTR41	-	chrX	135880751	135893428	CT45A10|NM_001291529.1	-	135880751,135882535,135883007,135885175,135893344	135881315,135882629,135883256,135885350,135893428	0.944444
testis_male_adult_54_years	chr12	14665626	14665645	14665635	+	High_confidence	68	89	230	8.540363	5.982451	chr12	14665652	14665749	LINE|L2|L2a	+	chr12	14665646	14668543	STRG.248409.3	+	14665646,14665858,14668024	14665697,14666013,14668543	0.821739
testis_male_adult_54_years	chr13	108886591	108886592	108886591	+	High_confidence	6	6	9	0.334188	2.500000	chr13	108886377	108886830	LTR|ERV1|MER61D	-	chr13	108886098	109127685	STRG.275927.1	+	108886098,108888371,108898015,108910002,108957687,108961538,108962423,108964760,108992375,109008896,109019710,109046915,109052299,109055045,109055389,109100784,109120369,109125111,109127281	108886462,108888477,108898133,108910150,108957799,108961656,108962495,108964902,108992448,109009049,109019911,109046991,109052475,109055126,109055595,109100887,109120466,109125358,109127685	0.888889
testis_male_adult_54_years	chr3	197814314	197814354	197814334	+	RAMPAGE_only	2	2	11	0.408452	2.721928	chr3	197814083	197814438	LTR|ERVL-MaLR|THE1A	-	chr3	197791278	197884302	LRCH3|ENST00000425562.6	+	197791278,197814907,197817175,197820324,197826877,197829563,197830769,197832196,197835673,197839320,197847408,197847871,197852560,197854391,197858833,197865422,197866111,197870159,197871324,197875697,197883540	197791540,197815052,197817302,197820430,197827014,197829673,197830863,197832317,197835822,197839397,197847460,197848021,197852620,197854445,197858905,197865471,197866219,197870278,197871462,197875775,197884302	0.909091
testis_male_adult_54_years	chr12	53320869	53320882	53320879	-	High_confidence	2	2	8	0.297056	2.807355	chr12	53320848	53320982	SINE|MIR|MIR	+	chr12	53309649	53321208	AAAS|ENST00000547238.5	-	53309649,53314297,53314750,53315093,53315334,53315726,53320564	53309721,53314441,53314849,53315140,53315426,53315782,53321208	0.875000
testis_male_adult_54_years	chr2	215453722	215453723	215453722	+	High_confidence	18	18	18	0.668376	4.058814	chr2	215453769	215453983	LINE|CR1|L3	+	chr2	215453706	215463871	LOC102724849|NR_110607.1	+	215453706,215456891,215461949,215463612	215453725,215456992,215462395,215463871	0.555556
testis_male_adult_54_years	chr19	48145850	48145872	48145855	+	High_confidence	16	16	55	2.042261	5.185353	chr19	48145850	48145966	SINE|MIR|MIR	-	chr19	48145907	48147413	AC011466.2|ENST00000594589.1	+	48145907,48147265	48146118,48147413	0.636364
testis_male_adult_54_years	chr1	1655395	1655411	1655409	-	RAMPAGE_only	125	148	286	10.619755	6.975670	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	STRG.118.20	-	1641771,1641905,1645125,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642508,1645262,1649637,1652566,1655484,1657302,1657498,1658972	0.975524
testis_male_adult_54_years	chr4	145599047	145599053	145599052	+	High_confidence	7	7	24	0.891168	4.229871	chr4	145598693	145599103	LTR|ERVL-MaLR|MSTD	-	chr4	145599041	145600816	MMAA|ENST00000648441.1	+	145599041,145600395	145599304,145600816	0.833333
testis_male_adult_54_years	chr2	80047315	80047328	80047327	-	RAMPAGE_only	6	6	10	0.371320	3.121928	chr2	80047192	80047400	DNA|hAT-Charlie|MER3	-	chr2	80028011	80030551	AC016716.2|ENST00000418621.1	-	80028011,80029405,80030501	80028352,80029500,80030551	0.500000
testis_male_adult_54_years	chr14	102234605	102234639	102234612	-	High_confidence	4	4	24	0.891168	4.349649	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102229432	102235063	MOK|ENST00000522537.5	-	102229432,102232534,102233687,102234956	102229657,102232708,102233789,102235063	0.500000
testis_male_adult_54_years	chr15	24793086	24793087	24793086	+	RAMPAGE_only	5	6	8	0.297056	2.807355	chr15	24793003	24793134	DNA|TcMar-Tc2|Kanga1a	-	chr15	24792016	24793534	STRG.291196.1	+	24792016	24793534	0.625000
testis_male_adult_54_years	chr14	96451525	96451535	96451525	+	RAMPAGE_only	9	10	16	0.594112	3.773557	chr14	96451524	96451593	LINE|RTE-BovB|MamRTE1	+	chr14	96392143	96488275	STRG.288466.1	+	96392143,96398074,96404756,96408846,96420821,96437834,96439777,96442729,96446516,96449801,96451424,96456346,96458082,96471477,96472686,96478464,96482998,96486897,96487957	96392259,96398263,96404865,96408941,96420932,96437915,96439934,96442818,96446607,96449879,96451570,96456475,96458212,96471606,96472755,96478662,96483219,96487056,96488275	0.875000
testis_male_adult_54_years	chr3	17705665	17705695	17705665	-	High_confidence	1	1	8	0.297056	2.521641	chr3	17703917	17705901	Retroposon|SVA|SVA_F	-	chr3	17508548	17706233	STRG.64179.26	-	17508548,17705402	17508605,17706233	0.625000
testis_male_adult_54_years	chr19	530236	530237	530236	+	RAMPAGE_only	5	5	7	0.259924	2.807355	chr19	529942	530246	SINE|Alu|AluY	-	chr19	531711	542092	CDC34|ENST00000215574.8	+	531711,535836,536242,537012,541338	532108,535923,536340,537147,542092	0.571429
testis_male_adult_54_years	chr3	83217913	83217946	83217941	-	High_confidence	11	13	64	2.376449	4.869054	chr3	83217683	83219179	LTR|ERV1|LTR12C	-	chr3	83216882	83217743	STRG.71539.1	-	83216882	83217743	0.921875
testis_male_adult_54_years	chr1	89302202	89302203	89302202	-	High_confidence	20	20	22	0.816904	4.221928	chr1	89301889	89303333	LTR|ERV1|LTR12C	-	chr1	89301808	89302291	STRG.12018.1	-	89301808	89302291	0.727273
testis_male_adult_54_years	chr11	104194156	104194197	104194189	+	High_confidence	5	5	31	1.151092	4.487123	chr11	104193801	104194659	Retroposon|SVA|SVA_F	+	chr11	104193926	104204977	STRG.241048.1	+	104193926,104200624,104204733	104194473,104200677,104204977	0.548387
testis_male_adult_54_years	chr8	81533869	81533894	81533893	-	High_confidence	16	16	28	1.039696	4.014147	chr8	81533082	81534670	LTR|ERVL|ERV3-16A3_I-int	-	chr8	81525085	81533893	STRG.187607.1	-	81525085,81527019,81529437,81531242,81533801	81525120,81527121,81529610,81531373,81533893	0.964286
testis_male_adult_54_years	chr1	153119387	153119401	153119387	-	RAMPAGE_only	5	5	24	0.891168	3.914866	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112113	153113515	SPRR2F|ENST00000468739.1	-	153112113,153113473	153112752,153113515	0.958333
testis_male_adult_54_years	chr1	207879059	207879092	207879081	-	High_confidence	7	7	28	1.039696	4.450212	chr1	207878821	207879292	LTR|ERVL-MaLR|MLT1F	-	chr1	207877875	207878124	STRG.23715.1	-	207877875	207878124	0.535714
testis_male_adult_54_years	chr8	105358462	105358517	105358516	+	High_confidence	9	9	53	1.967997	5.284340	chr8	105358476	105358672	DNA|hAT-Charlie|MER5A	+	chr8	105358516	105561422	ZFPM2|ENST00000524235.5	+	105358516,105414874,105419143,105444279,105561362	105358637,105415006,105419302,105444381,105561422	0.622642
testis_male_adult_54_years	chr3	186458459	186458477	186458459	-	High_confidence	5	5	20	0.742640	3.391893	chr3	186458202	186458700	LTR|ERVL|MER21C	-	chr3	186457452	186458482	LINC02052|ENST00000441169.1	-	186457452,186458084	186457630,186458482	0.900000
testis_male_adult_54_years	chr3	169812897	169812904	169812897	-	High_confidence	3	3	8	0.297056	2.750000	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	1.000000
testis_male_adult_54_years	chr7	100733594	100733611	100733594	+	High_confidence	4	4	11	0.408452	3.277613	chr7	100733487	100734066	LINE|L1|L1MEf	-	chr7	100733625	100797797	ZAN|ENST00000538115.5	+	100733625,100734026,100735719,100736482,100736808,100737261,100738460,100746537,100747549,100748136,100748323,100750624,100751181,100751711,100755225,100758201,100758530,100759720,100760390,100762214,100763805,100764026,100765351,100766524,100767009,100767830,100768609,100769879,100771843,100773284,100773720,100775327,100775668,100776439,100779445,100784622,100785996,100787888,100789217,100790941,100791965,100792404,100794119,100795195,100797365,100797576,100797706	100733648,100734221,100735772,100736629,100737080,100737349,100738613,100746702,100747641,100748215,100748470,100750896,100751266,100753229,100755410,100758343,100758650,100759845,100760536,100762358,100763916,100764196,100765554,100766666,100767257,100768011,100768721,100769974,100772020,100773493,100773865,100775575,100775833,100776564,100779750,100784834,100786141,100788136,100789347,100791113,100792148,100792544,100794258,100795336,100797465,100797623,100797797	0.818182
testis_male_adult_54_years	chr4	56272340	56272345	56272344	+	High_confidence	3	3	7	0.259924	2.521641	chr4	56272344	56272407	LINE|CR1|L3	+	chr4	56272403	56328092	KIAA1211|ENST00000541073.5	+	56272403,56298213,56301225,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56272492,56298349,56301247,56307699,56310734,56313379,56316689,56323567,56324266,56328092	1.000000
testis_male_adult_54_years	chr16	13940820	13940821	13940820	+	RAMPAGE_only	8	9	11	0.408452	2.921928	chr16	13940407	13940901	LTR|ERVL|MER77	-	chr16	13937763	13948004	ERCC4|ENST00000462862.1	+	13937763,13943973,13944722,13947613	13937858,13944095,13944835,13948004	0.909091
testis_male_adult_54_years	chr2	183137325	183137369	183137344	+	RAMPAGE_only	6	6	32	1.188224	4.476410	chr2	183137312	183137592	SINE|Alu|AluJb	+	chr2	183149303	183161680	STRG.52778.7	+	183149303,183157443,183158282,183158630,183159487,183161053	183151649,183157513,183158411,183158677,183159652,183161680	0.937500
testis_male_adult_54_years	chr14	58157840	58157881	58157870	+	High_confidence	5	5	31	1.151092	4.631616	chr14	58157834	58157949	LTR?|LTR?|MamRep605	+	chr14	58157824	58158362	STRG.283231.1	+	58157824	58158362	0.741935
testis_male_adult_54_years	chr5	112862349	112862378	112862377	+	High_confidence	118	138	268	9.951379	6.478436	chr5	112862040	112862465	LTR|ERV1|MER51A	-	chr5	112862361	112867724	SRP19|ENST00000506987.1	+	112862361,112864456,112864620,112867403	112862583,112864528,112864732,112867724	0.850746
testis_male_adult_54_years	chr10	9183357	9183395	9183357	-	High_confidence	4	4	22	0.816904	3.880180	chr10	9183166	9184557	LTR|ERV1|LTR12C	+	chr10	9063045	9183783	STRG.213521.3	-	9063045,9176070,9183154	9065439,9176220,9183783	0.772727
testis_male_adult_54_years	chr18	76122844	76122881	76122855	-	High_confidence	9	16	67	2.487845	4.783455	chr18	76122565	76123022	LTR|ERVL-MaLR|MLT1C	-	chr18	76122149	76122680	STRG.330248.1	-	76122149	76122680	0.910448
testis_male_adult_54_years	chr4	21582076	21582103	21582086	+	High_confidence	6	6	27	1.002564	4.403856	chr4	21582093	21582211	DNA|hAT-Charlie|MER112	+	chr4	21582095	21613722	LOC105374516|NR_134233.1	+	21582095,21582217,21608809,21613331	21582125,21582375,21608945,21613722	0.666667
testis_male_adult_54_years	chr18	13004803	13004831	13004830	+	RAMPAGE_only	4	4	15	0.556980	3.807355	chr18	13003878	13005061	LINE|L2|L2a	-	chr18	13008499	13125052	CEP192|ENST00000513432.5	+	13008499,13012972,13015327,13017187,13018479,13019081,13029662,13030464,13040829,13042203,13048858,13049764,13052918,13055779,13057584,13067830,13068093,13068358,13068851,13069088,13069737,13071038,13072754,13073008,13087016,13087530,13089455,13092376,13095502,13096183,13099475,13100304,13103508,13104983,13113585,13114129,13116376,13117584,13124631	13008631,13013025,13015448,13017336,13018615,13019206,13030002,13030608,13040956,13042334,13049681,13049891,13053090,13056698,13059312,13067956,13068237,13068422,13068991,13069181,13069856,13071212,13072845,13073185,13087277,13087646,13089565,13092527,13095681,13096307,13099581,13100512,13103588,13105079,13113705,13114251,13116503,13117643,13125052	0.666667
testis_male_adult_54_years	chr1	3752312	3752342	3752331	-	High_confidence	22	22	69	2.562109	5.541589	chr1	3752280	3752378	LTR|ERV1|LTR45C	+	chr1	3750366	3752330	STRG.545.1	-	3750366	3752330	0.971014
testis_male_adult_54_years	chr5	30102467	30102480	30102471	+	High_confidence	7	7	18	0.668376	3.725481	chr5	30102333	30102720	LINE|L1|L1MC3	+	chr5	30102475	30106413	STRG.115499.1	+	30102475,30104526,30106152	30102525,30104693,30106413	0.888889
testis_male_adult_54_years	chr10	89018169	89018170	89018169	-	High_confidence	66	66	83	3.081957	4.763742	chr10	89017753	89019141	LTR|ERV1|LTR12C	-	chr10	89017507	89018182	STRG.223010.1	-	89017507	89018182	0.939759
testis_male_adult_54_years	chr2	38880043	38880078	38880043	+	RAMPAGE_only	155	159	580	21.536566	5.960161	chr2	38880011	38880140	SINE|Alu|FLAM_C	+	chr2	38876067	38882652	MORN2|ENST00000409131.2	+	38876067,38880178,38880599,38881475,38882412	38876110,38880229,38880706,38881578,38882652	0.853448
testis_male_adult_54_years	chr12	124839728	124839729	124839728	-	RAMPAGE_only	6	6	9	0.334188	2.750000	chr12	124839074	124839686	LINE|L1|L1MB3	-	chr12	124785819	124817707	SCARB1|ENST00000544327.1	-	124785819,124787405,124795194,124800123,124807760,124810173,124811869,124814201,124814972,124817549	124786503,124787457,124795268,124800242,124807927,124810289,124811965,124814405,124815114,124817707	0.777778
testis_male_adult_54_years	chr15	98705340	98705372	98705355	+	RAMPAGE_only	3	3	12	0.445584	3.459432	chr15	98705277	98705421	LINE|L2|L2	-	chr15	98707830	98891619	IGF1R|ENST00000558355.1	+	98707830,98891324	98708107,98891619	0.500000
testis_male_adult_54_years	chr3	7342688	7342738	7342722	+	RAMPAGE_only	16	21	50	1.856601	5.228758	chr3	7342584	7342771	DNA|hAT-Charlie|MER5A	-	chr3	7298682	7686427	GRM7|ENST00000402647.6	+	7298682,7306497,7415022,7452606,7461582,7578421,7680048,7686356	7298825,7306652,7415163,7452807,7461722,7579357,7680295,7686427	0.840000
testis_male_adult_54_years	chr8	101202437	101202449	101202448	-	High_confidence	5	5	10	0.371320	2.646439	chr8	101202158	101202485	SINE|Alu|AluSg7	+	chr8	101198936	101201657	ZNF706|ENST00000519103.1	-	101198936,101199989,101201606	101199239,101200123,101201657	1.000000
testis_male_adult_54_years	chr11	12249193	12249239	12249193	+	RAMPAGE_only	11	12	55	2.042261	4.878495	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.854545
testis_male_adult_54_years	chr13	77475595	77475596	77475595	+	RAMPAGE_only	7	7	11	0.408452	3.121928	chr13	77474476	77476020	LTR|ERV1|LTR12C	-	chr13	77535673	77645263	SCEL|NM_144777.2	+	77535673,77555856,77556595,77559803,77563830,77567679,77568294,77569370,77572123,77589143,77591394,77593513,77597544,77599328,77599688,77602064,77602653,77603075,77604355,77608055,77609057,77610046,77612890,77613892,77617598,77617802,77618003,77627946,77634378,77637119,77640675,77642705,77644257	77535824,77555918,77556713,77559863,77563899,77567748,77568333,77569451,77572189,77589224,77591460,77593573,77597589,77599388,77599748,77602124,77602713,77603135,77604415,77608115,77609117,77610106,77612941,77613955,77617658,77617862,77618060,77628009,77634450,77637194,77640784,77642808,77645263	0.545455
testis_male_adult_54_years	chr20	34372032	34372035	34372034	+	RAMPAGE_only	13	18	21	0.779772	3.346439	chr20	34372024	34372328	SINE|Alu|AluY	+	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.523810
testis_male_adult_54_years	chr3	11604455	11604456	11604455	-	High_confidence	23	24	32	1.188224	4.476410	chr3	11604225	11604413	SINE|MIR|MIR3	-	chr3	11556066	11604581	VGLL4|NM_001284391.1	-	11556066,11559331,11564796,11601832,11604323	11558827,11559455,11565019,11602022,11604581	1.000000
testis_male_adult_54_years	chr9	13038260	13038261	13038260	-	RAMPAGE_only	5	5	8	0.297056	3.000000	chr9	13037883	13043909	LINE|L1|L1PA2	+	chr9	12958502	13034326	AL161449.2|ENST00000649120.1	-	12958502,12962319,13003434,13004932,13029408,13034170	12959988,12962417,13003622,13005304,13029577,13034326	0.625000
testis_male_adult_54_years	chr5	32107341	32107352	32107351	+	High_confidence	8	8	21	0.779772	4.121928	chr5	32107357	32107571	SINE|Alu|AluJr	+	chr5	32107320	32108461	PDZD2|ENST00000510285.1	+	32107320,32107968	32107460,32108461	0.904762
testis_male_adult_54_years	chr11	94730982	94730994	94730982	+	RAMPAGE_only	30	30	97	3.601805	5.717663	chr11	94730932	94730983	SINE|MIR|MIR3	-	chr11	94706430	94799539	AMOTL1|ENST00000299004.13	+	94706430,94728920,94740937,94795010,94799389	94706597,94729055,94740988,94795160,94799539	0.577320
testis_male_adult_54_years	chr10	92928419	92928420	92928419	+	High_confidence	7	10	11	0.408452	3.121928	chr10	92928456	92928528	LINE|L2|L2a	+	chr10	92928373	93058524	EXOC6|ENST00000495132.5	+	92928373,92934143,92934309,92935813,92940726,92948273,92952272,92954629,92955579,92974052,92997473,92999249,93014193,93056923,93058222	92928422,92934190,92934430,92935885,92940824,92948379,92952382,92954741,92955714,92974232,92997615,92999387,93014267,93057036,93058524	0.909091
testis_male_adult_54_years	chr15	30624538	30624570	30624538	+	High_confidence	10	10	26	0.965432	4.238901	chr15	30624495	30624669	LINE|CR1|L3	+	chr15	30624547	30646202	AC091057.6|ENST00000564902.5	+	30624547,30624722,30630702,30633489,30634169,30635079,30635486,30638745,30641521,30644638,30646113	30624612,30624816,30630773,30633586,30634423,30635188,30635633,30638820,30641617,30644702,30646202	0.615385
testis_male_adult_54_years	chr9	637524	637525	637524	+	RAMPAGE_only	10	10	12	0.445584	3.084963	chr9	637457	637639	DNA|hAT-Charlie|MER5A	-	chr9	635670	643434	STRG.195959.29	+	635670	643434	0.916667
testis_male_adult_54_years	chr17	81579828	81579839	81579838	-	RAMPAGE_only	105	105	173	6.423838	6.473109	chr17	81579671	81579901	LINE|L2|L2	+	chr17	81556884	81577433	NPLOC4|NR_130139.1	-	81556884,81565504,81567416,81569015,81572016,81577357	81559416,81565607,81567533,81569111,81572088,81577433	0.526012
testis_male_adult_54_years	chr13	47946043	47946067	47946066	+	High_confidence	4	4	12	0.445584	3.095795	chr13	47945691	47946353	DNA|TcMar-Tigger|MER44D	+	chr13	47946062	47956118	STRG.267977.1	+	47946062,47955846	47946110,47956118	0.666667
testis_male_adult_54_years	chr2	138601520	138601521	138601520	-	RAMPAGE_only	9	9	10	0.371320	2.947703	chr2	138601420	138601828	LTR|ERVL-MaLR|MLT1C	+	chr2	138598351	138599399	STRG.47065.1	-	138598351	138599399	0.500000
testis_male_adult_54_years	chr1	70412336	70412337	70412336	+	RAMPAGE_only	5	5	8	0.297056	2.807355	chr1	70412323	70412622	SINE|Alu|AluSq2	+	chr1	70411271	70439570	CTH|ENST00000370938.7	+	70411271,70415955,70417936,70421565,70424284,70429793,70430316,70432082,70433827,70435124,70438687,70439100	70411583,70416037,70418032,70421675,70424416,70429851,70430394,70432235,70433949,70435177,70438826,70439570	0.625000
testis_male_adult_54_years	chr9	127708103	127708104	127708103	-	RAMPAGE_only	4	4	7	0.259924	2.584963	chr9	127707948	127708091	SINE|MIR|MIRb	-	chr9	127691810	127696032	STRG.210944.3	-	127691810,127694926,127695611	127692512,127695141,127696032	0.714286
testis_male_adult_54_years	chr5	1380069	1380070	1380069	-	High_confidence	276	276	365	13.553184	5.842368	chr5	1379679	1380686	LTR|ERV1|LTR12D	-	chr5	1363581	1380067	LINC01511|ENST00000504989.1	-	1363581,1379561	1364691,1380067	0.947945
testis_male_adult_54_years	chr6	111276309	111276310	111276309	+	RAMPAGE_only	9	9	9	0.334188	3.169925	chr6	111275757	111276335	LINE|L1|L1MB3	-	chr6	111259347	111281168	STRG.149451.1	+	111259347,111262256,111263829,111265875,111273329	111259727,111262425,111263946,111267837,111281168	1.000000
testis_male_adult_54_years	chr3	196337567	196337596	196337595	-	High_confidence	19	20	53	1.967997	5.614713	chr3	196337311	196337931	LTR|ERV1|MER50	+	chr3	196322682	196337591	STRG.87171.20	-	196322682,196324270,196326954,196327389,196337462	196323997,196324440,196327032,196327591,196337591	0.679245
testis_male_adult_54_years	chr1	179836116	179836133	179836132	-	High_confidence	7	7	14	0.519848	3.664498	chr1	179836072	179837495	LTR|ERV1|LTR12C	-	chr1	179829608	179836124	AL359853.2|ENST00000442108.1	-	179829608,179835994	179829831,179836124	0.714286
testis_male_adult_54_years	chr1	89272859	89272891	89272890	-	High_confidence	39	42	225	8.354702	6.186938	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.977778
testis_male_adult_54_years	chr12	2269705	2269727	2269726	+	High_confidence	44	54	108	4.010257	5.772119	chr12	2269660	2270139	LTR|ERVL|LTR33	-	chr12	2269775	2288937	CACNA1C-IT3|ENST00000542680.1	+	2269775,2288018,2288667	2269941,2288204,2288937	0.759259
testis_male_adult_54_years	chr22	32371342	32371367	32371342	-	High_confidence	4	4	17	0.631244	3.750000	chr22	32371175	32371447	SINE|Alu|AluY	+	chr22	32359905	32371264	RFPL3S|NR_104232.1	-	32359905,32367689,32368496,32370898,32371197	32360839,32367714,32368567,32370941,32371264	0.588235
testis_male_adult_54_years	chr4	12223456	12223466	12223465	+	High_confidence	5	5	11	0.408452	3.095795	chr4	12223223	12223497	LTR|ERVL|LTR16C	-	chr4	12223450	12251286	LOC101929019|NR_125910.1	+	12223450,12243051,12246934,12250986	12223628,12243178,12246970,12251286	0.636364
testis_male_adult_54_years	chr2	112063708	112063767	112063733	-	High_confidence	146	153	374	13.887372	7.315313	chr2	112063385	112063860	LINE|L2|L2c	+	chr2	112061179	112063761	STRG.44022.1	-	112061179,112062483	112061489,112063761	0.962567
testis_male_adult_54_years	chr14	101834573	101834601	101834573	-	High_confidence	11	11	39	1.448148	4.553652	chr14	101834479	101835469	LINE|RTE-X|L4_C_Mam	-	chr14	101834076	101834584	STRG.289043.1	-	101834076	101834584	0.897436
testis_male_adult_54_years	chr6	41499032	41499048	41499032	+	High_confidence	5	5	15	0.556980	3.773557	chr6	41498920	41499161	SINE|MIR|MIRc	-	chr6	41499034	41499434	STRG.141380.1	+	41499034	41499434	0.600000
testis_male_adult_54_years	chr5	180045540	180045541	180045540	-	RAMPAGE_only	16	16	17	0.631244	3.750000	chr5	180045262	180046393	LTR|ERV1|LTR12E	-	chr5	179911650	180071721	RNF130|ENST00000522208.6	-	179911650,179966805,179970409,179978202,179980128,180013060,180040452,180071455	179920426,179967010,179970506,179978285,179980200,180013311,180040647,180071721	0.529412
testis_male_adult_54_years	chr14	57278417	57278418	57278417	+	High_confidence	6	6	6	0.222792	2.584963	chr14	57278141	57278418	LTR|ERVL|LTR33B	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.666667
testis_male_adult_54_years	chr8	114311361	114311375	114311374	-	High_confidence	8	8	21	0.779772	4.297079	chr8	114311169	114312595	LTR|ERV1|LTR12C	+	chr8	114302895	114311357	STRG.192548.1	-	114302895,114304406,114311092	114303144,114304495,114311357	0.666667
testis_male_adult_54_years	chr1	170284168	170284192	170284168	-	High_confidence	4	4	15	0.556980	3.664498	chr1	170284105	170284379	SINE|MIR|MIR	-	chr1	170271404	170284208	LINC01142|NR_026957.1	-	170271404,170273532,170278829,170284138	170271981,170274507,170278932,170284208	0.933333
testis_male_adult_54_years	chr1	217785151	217785179	217785178	-	High_confidence	9	9	34	1.262488	4.559546	chr1	217784892	217785262	LTR|ERVL-MaLR|MLT1C	-	chr1	217781197	217785120	SPATA17-AS1|NR_125784.1	-	217781197,217782124,217784961	217781283,217782299,217785120	0.823529
testis_male_adult_54_years	chr10	69495112	69495135	69495134	+	High_confidence	44	47	99	3.676069	5.084869	chr10	69494989	69495143	SINE|MIR|MIR3	+	chr10	69495134	69506995	TSPAN15|ENST00000459981.1	+	69495134,69495593,69498279,69504437,69506123,69506828	69495423,69495689,69498396,69504485,69506240,69506995	0.909091
testis_male_adult_54_years	chr1	156335989	156336010	156336009	-	High_confidence	7	7	12	0.445584	3.084963	chr1	156335968	156336083	LINE|L1|L1MA10	+	chr1	156320839	156336007	CCT3|ENST00000490221.5	-	156320839,156324971,156333546,156334712,156334867,156335826	156321025,156325089,156333643,156334775,156334918,156336007	0.916667
testis_male_adult_54_years	chr1	27645008	27645009	27645008	-	High_confidence	19	20	25	0.928300	4.483856	chr1	27644795	27645003	SINE|MIR|MIRc	-	chr1	27612299	27645031	STRG.3480.2	-	27612299,27613218,27614429,27614849,27615433,27615688,27616856,27617192,27621558,27623041,27625088,27641084,27644914	27613122,27613350,27614583,27614926,27615613,27615844,27617006,27617296,27621657,27623929,27625151,27641124,27645031	0.600000
testis_male_adult_54_years	chr4	170091694	170091700	170091694	-	High_confidence	80	84	116	4.307313	5.847633	chr4	170091048	170092581	LTR|ERV1|LTR12C	+	chr4	170073249	170091699	AADAT|ENST00000502392.1	-	170073249,170078508,170087115,170088395,170089623,170090417,170091593	170073345,170078583,170087248,170088564,170089736,170090531,170091699	0.732759
testis_male_adult_54_years	chr1	76040508	76040540	76040526	+	RAMPAGE_only	6	6	35	1.299620	3.957294	chr1	76040192	76040658	LTR|ERV1|MER61E	-	chr1	76041690	76066228	AC092813.2|ENST00000434540.1	+	76041690,76066037	76041898,76066228	0.914286
testis_male_adult_54_years	chrX	136168208	136168209	136168208	+	High_confidence	40	41	51	1.893733	5.093802	chrX	136168049	136168241	SINE|MIR|MIR	-	chrX	136168193	136208575	FHL1|ENST00000434885.5	+	136168193,136169906,136206406,136207015,136207791,136208454	136168267,136169980,136206588,136207190,136207961,136208575	0.823529
testis_male_adult_54_years	chr16	53413266	53413267	53413266	+	High_confidence	41	41	42	1.559544	4.723406	chr16	53412649	53413585	LTR|ERV1|LTR12D	+	chr16	53413216	53413653	STRG.306949.1	+	53413216	53413653	0.666667
testis_male_adult_54_years	chr6	144495032	144495067	144495066	+	RAMPAGE_only	4	4	10	0.371320	3.121928	chr6	144494123	144495706	LTR|ERV1|LTR12C	-	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.800000
testis_male_adult_54_years	chr7	107580245	107580272	107580264	+	High_confidence	631	634	3609	134.009428	7.345587	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.924910
testis_male_adult_54_years	chr2	131580218	131580230	131580218	+	RAMPAGE_only	2	2	8	0.297056	3.000000	chr2	131579729	131580712	LINE|L1|L1MA6	-	chr2	131543490	131676380	STRG.46606.28	+	131543490,131545045,131553012,131555071,131557350,131564860,131575034,131577507,131580151,131582017,131588664,131596773,131597047,131600004,131601422,131604017,131609381,131611132,131612985,131625937,131629837	131543823,131545201,131553166,131555184,131557463,131564972,131575207,131577614,131580264,131582129,131592104,131596888,131597221,131600111,131601556,131604088,131609452,131611709,131613103,131629655,131676380	0.750000
testis_male_adult_54_years	chr11	33141750	33141753	33141752	-	RAMPAGE_only	9	17	19	0.705508	4.142664	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33084583	33161465	CSTF3|ENST00000323959.8	-	33084583,33085712,33085894,33086987,33090531,33092270,33096305,33096834,33098689,33099033,33099607,33102176,33103106,33105566,33105882,33105997,33107902,33108385,33141666,33141884,33161298	33085289,33085773,33085989,33087141,33090727,33092340,33096408,33096978,33098764,33099150,33099717,33102339,33103184,33105693,33105917,33106064,33108000,33108418,33141762,33141986,33161465	0.842105
testis_male_adult_54_years	chr7	142171926	142171950	142171949	+	High_confidence	10	10	34	1.262488	4.476410	chr7	142171707	142172029	LINE|L2|L2c	-	chr7	142171169	142221288	MGAM2|ENST00000496337.1	+	142171169,142172097,142172651,142173228,142175651,142183265,142185076,142185988,142187749,142189366,142196153,142196564,142196699,142197399,142197643,142198138,142198614,142199879,142208219,142208572,142218360,142219869	142171440,142172194,142172764,142173354,142175780,142183373,142185139,142186123,142187834,142189505,142196287,142196599,142196816,142197548,142197728,142198195,142198739,142199968,142208306,142208622,142218531,142221288	0.911765
testis_male_adult_54_years	chr16	21152617	21152629	21152617	-	High_confidence	3	3	11	0.408452	3.321928	chr16	21152413	21153830	LTR|ERV1|LTR12C	+	chr16	20944205	21153132	STRG.305049.1	-	20944205,20948482,20952432,20954812,20959178,20963283,20969791,20975232,20979329,20982720,20985048,20987304,20987692,20987941,20997282,21000223,21003103,21019623,21021970,21024595,21027026,21031044,21033973,21036713,21037760,21039851,21042026,21049568,21049909,21051669,21054419,21058085,21060263,21062481,21067282,21069414,21070709,21075446,21081635,21086848,21097354,21098615,21104470,21106489,21111625,21111992,21117202,21121944,21125174,21127686,21134258,21136323,21140535,21141299,21145180,21145983,21150289,21152365	20944663,20948637,20952549,20955057,20959404,20965425,20969990,20975415,20979546,20982886,20985715,20987448,20987849,20988065,20997462,21000518,21003207,21019869,21022100,21024701,21027127,21031286,21034085,21036848,21037980,21039943,21042203,21049682,21050018,21051868,21054534,21058196,21060356,21062683,21067419,21069594,21070826,21075561,21081727,21087060,21097499,21098769,21104594,21106674,21111804,21112098,21117339,21122124,21125370,21127812,21134454,21136513,21140710,21141372,21145406,21146088,21150534,21153132	0.818182
testis_male_adult_54_years	chr3	47041388	47041389	47041388	-	RAMPAGE_only	8	8	8	0.297056	3.000000	chr3	47041366	47041501	SINE|Alu|AluJr	+	chr3	47016688	47123535	SETD2|ENST00000445387.5	-	47016688,47017637,47019759,47037665,47042560,47046486,47056820,47062162,47064554,47067069,47083719,47086194,47088112,47097954,47101457,47103345,47105996,47113875,47116622,47120181	47017254,47017739,47019840,47037777,47042700,47046621,47057490,47062346,47064630,47067118,47084382,47086314,47088247,47098081,47101555,47103423,47106120,47114004,47116754,47123535	1.000000
testis_male_adult_54_years	chr1	226871377	226871393	226871377	+	High_confidence	3	3	12	0.445584	3.459432	chr1	226871299	226871488	SINE|MIR|MIR3	-	chr1	226871267	226896098	PSEN2|ENST00000366782.5	+	226871267,226875364,226880468,226881887,226883704,226885537,226888090,226888828,226890034,226891277,226891742,226894006,226895423	226871404,226875550,226880724,226882048,226883919,226885679,226888158,226889049,226890133,226891361,226891844,226894125,226896098	0.833333
testis_male_adult_54_years	chr13	63593383	63593438	63593437	+	High_confidence	413	413	674	25.026975	6.474255	chr13	63593164	63593967	LTR|ERV1|LTR12D	+	chr13	63593394	63594751	STRG.270189.1	+	63593394	63594751	0.982196
testis_male_adult_54_years	chrX	153348565	153348594	153348593	+	RAMPAGE_only	4	4	12	0.445584	3.418296	chrX	153348340	153349105	DNA|TcMar-Tc2|Kanga2_a	-	chrX	153344276	153351393	ZNF275|ENST00000647705.1	+	153344276,153346818	153345621,153351393	1.000000
testis_male_adult_54_years	chr4	94562622	94562627	94562622	+	RAMPAGE_only	2	2	7	0.259924	2.521641	chr4	94562452	94562686	DNA|hAT-Charlie|Charlie10	+	chr4	94489034	94575938	PDLIM5|ENST00000510099.5	+	94489034,94523723,94573350,94575615	94489070,94523875,94573393,94575938	0.857143
testis_male_adult_54_years	chr5	40775588	40775601	40775588	-	RAMPAGE_only	5	5	11	0.408452	3.459432	chr5	40775545	40776521	LINE|L2|L2a	-	chr5	40764769	40771855	PRKAA1|ENST00000505783.5	-	40764769,40767465,40769415,40771718	40765238,40767690,40769503,40771855	0.727273
testis_male_adult_54_years	chr1	52911959	52911960	52911959	-	High_confidence	6	6	8	0.297056	2.521641	chr1	52911855	52912001	SINE|MIR|MIRc	+	chr1	52907838	52911888	ECHDC2|ENST00000492992.1	-	52907838,52911565,52911722	52907954,52911653,52911888	0.750000
testis_male_adult_54_years	chr4	124985	125006	125005	+	High_confidence	3	3	9	0.334188	3.000000	chr4	124971	125157	LTR|ERV1|MER57E3	-	chr4	124537	133166	STRG.87288.4	+	124537,126847,130787,131409	125296,128401,130914,133166	0.888889
testis_male_adult_54_years	chr12	53467737	53467757	53467737	+	High_confidence	10	10	21	0.779772	3.558519	chr12	53467721	53467786	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	1.000000
testis_male_adult_54_years	chr3	2083607	2083654	2083607	-	High_confidence	12	12	37	1.373884	4.321888	chr3	2083449	2085084	LTR|ERV1|LTR12C	+	chr3	2082577	2083891	STRG.60916.1	-	2082577	2083891	0.675676
testis_male_adult_54_years	chr2	9422771	9422818	9422817	-	High_confidence	5	5	13	0.482716	3.392747	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9412359	9423087	STRG.30374.17	-	9412359,9418625,9419989,9422478	9414256,9418732,9420100,9423087	0.538462
testis_male_adult_54_years	chr21	28048446	28048447	28048446	+	High_confidence	17	17	20	0.742640	3.932138	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.950000
testis_male_adult_54_years	chr21	41430565	41430586	41430585	+	RAMPAGE_only	5	5	10	0.371320	3.169925	chr21	41429929	41430715	DNA|hAT-Charlie|Charlie2b	+	chr21	41431713	41459214	MX1|ENST00000288383.10	+	41431713,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41432175,41435960,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	0.900000
testis_male_adult_54_years	chr5	25614114	25614127	25614120	-	High_confidence	10	10	34	1.262488	4.750000	chr5	25613733	25615112	LTR|ERV1|LTR12C	-	chr5	25613565	25614155	STRG.114999.1	-	25613565	25614155	0.823529
testis_male_adult_54_years	chr4	115179033	115179034	115179033	-	High_confidence	208	209	257	9.542927	5.450956	chr4	115178618	115179981	LTR|ERV1|LTR12C	-	chr4	115177938	115179057	STRG.100562.1	-	115177938	115179057	0.968872
testis_male_adult_54_years	chr5	173214303	173214304	173214303	+	High_confidence	26	26	27	1.002564	4.546594	chr5	173213272	173214621	LTR|ERV1|LTR12C	+	chr5	173214476	173215203	STRG.133018.1	+	173214476	173215203	0.703704
testis_male_adult_54_years	chr19	12034751	12034779	12034754	-	High_confidence	4	4	16	0.594112	3.773557	chr19	12034679	12035024	LTR|ERV1|MER4D	+	chr19	12016401	12035669	ZNF433|ENST00000455504.6	-	12016401,12017875,12018165,12034827,12035536	12016666,12017936,12018380,12034874,12035669	0.687500
testis_male_adult_54_years	chr11	79021810	79021833	79021815	-	High_confidence	3	3	10	0.371320	3.321928	chr11	79021800	79021863	SINE|MIR|MIR3	+	chr11	78924455	79021793	TENM4|ENST00000529798.1	-	78924455,79014570,79021574	78924746,79014750,79021793	0.700000
testis_male_adult_54_years	chr16	47589099	47589100	47589099	+	RAMPAGE_only	7	7	7	0.259924	2.521641	chr16	47589128	47589377	SINE|MIR|MIR	+	chr16	47594149	47598036	PHKB|ENST00000566436.1	+	47594149,47596372,47597803	47594214,47596531,47598036	0.857143
testis_male_adult_54_years	chr2	46905183	46905214	46905183	-	RAMPAGE_only	3	3	10	0.371320	2.947703	chr2	46904869	46905220	LTR|ERVL-MaLR|THE1A	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.900000
testis_male_adult_54_years	chr19	22324402	22324413	22324409	+	High_confidence	7	7	26	0.965432	4.563856	chr19	22324407	22324685	LTR|ERV1|MER50	-	chr19	22324424	22324973	STRG.334319.8	+	22324424	22324973	0.653846
testis_male_adult_54_years	chr8	96453070	96453071	96453070	+	High_confidence	34	34	35	1.299620	4.098944	chr8	96452138	96453488	LTR|ERV1|LTR12C	+	chr8	96453055	96468547	STRG.190346.1	+	96453055,96468476	96453676,96468547	0.885714
testis_male_adult_54_years	chr19	8006003	8006004	8006003	-	High_confidence	7	7	7	0.259924	2.807355	chr19	8005997	8006113	SINE|MIR|MIRc	+	chr19	7958572	8005645	ELAVL1|NM_001419.2	-	7958572,7967564,7973724,7981082,7991643,8005494	7963807,7967790,7973878,7981186,7991831,8005645	0.857143
testis_male_adult_54_years	chr16	69996417	69996434	69996420	-	RAMPAGE_only	4	4	11	0.408452	2.846439	chr16	69996297	69996477	SINE|MIR|MIRb	+	chr16	69976387	70021930	STRG.309069.5	-	69976387,69978076,69978221,69982349,69982657,69986380,69990596,69996389,70010750,70011840,70014103,70018046,70021823	69976732,69978112,69978282,69982494,69982757,69986509,69996226,69996468,70010856,70011929,70014167,70018097,70021930	0.818182
testis_male_adult_54_years	chr12	122733504	122733505	122733504	-	RAMPAGE_only	9	9	10	0.371320	3.169925	chr12	122733222	122733515	SINE|Alu|AluJb	-	chr12	122726075	122730843	HCAR1|ENST00000432564.2	-	122726075	122730843	0.500000
testis_male_adult_54_years	chr11	36078032	36078054	36078053	+	RAMPAGE_only	6	6	20	0.742640	4.221928	chr11	36077332	36079193	LTR|ERV1|MER52A	-	chr11	35944098	36229313	LDLRAD3|ENST00000532490.1	+	35944098,36001085,36081652,36098326,36229159	35944144,36001186,36081778,36098461,36229313	0.500000
testis_male_adult_54_years	chr3	33798241	33798247	33798246	-	High_confidence	70	81	165	6.126782	5.887359	chr3	33798164	33798276	LINE|L2|L2b	+	chr3	33793643	33798539	AC112220.2|ENST00000604982.2	-	33793643,33798394	33798022,33798539	0.806061
testis_male_adult_54_years	chr2	19469348	19469349	19469348	+	High_confidence	24	24	34	1.262488	4.413910	chr2	19468897	19469356	LTR|ERVL-MaLR|MLT1G1	-	chr2	19469020	19505808	LINC01808|ENST00000641932.1	+	19469020,19475450,19479096,19480317,19487311,19488367,19505359	19469430,19475612,19479284,19480425,19487515,19488489,19505808	0.764706
testis_male_adult_54_years	chr9	104763726	104763744	104763743	+	High_confidence	4	4	9	0.334188	3.000000	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130759.1	+	104763740,104768862,104770848,104772821,104772996	104764300,104769021,104770998,104772908,104777764	0.888889
testis_male_adult_54_years	chr7	775136	775157	775156	+	RAMPAGE_only	4	4	8	0.297056	2.807355	chr7	775198	775267	DNA|TcMar-Tigger|MER2B	+	chr7	768474	786044	DNAAF5|ENST00000403952.3	+	768474,770470,774047,775005,779952,785516	769205,770618,774198,775162,780144,786044	0.625000
testis_male_adult_54_years	chr20	7803100	7803134	7803100	-	High_confidence	44	44	70	2.599241	4.685989	chr20	7802788	7804081	LTR|ERV1|LTR12C	-	chr20	7802574	7803082	STRG.341410.1	-	7802574	7803082	0.857143
testis_male_adult_54_years	chr14	75767578	75767579	75767578	+	RAMPAGE_only	4	4	7	0.259924	2.584963	chr14	75767209	75768289	LINE|L2|L2a	-	chr14	75745487	75886937	TTLL5|ENST00000554510.5	+	75745487,75752892,75757830,75764614,75766061,75771733,75775483,75776746,75779574,75782486,75783146,75792915,75820006,75863666,75882684,75886699	75745581,75752955,75757869,75764772,75766368,75771854,75775630,75776850,75779702,75782573,75783530,75793100,75820161,75863862,75882902,75886937	0.571429
testis_male_adult_54_years	chr13	21611213	21611214	21611213	+	High_confidence	21	21	31	1.151092	4.375222	chr13	21610978	21611538	LTR|ERV1|LTR12_	+	chr13	21610777	21612227	STRG.264436.1	+	21610777	21612227	0.806452
testis_male_adult_54_years	chr19	16863375	16863376	16863375	+	High_confidence	6	6	8	0.297056	3.000000	chr19	16863194	16863496	DNA|TcMar-Tigger|MER2	+	chr19	16863273	16878961	SIN3B|ENST00000595541.1	+	16863273,16865409,16866372,16869459,16871228,16876054,16876485,16877544,16878182,16878496	16863796,16865648,16866556,16870075,16871398,16876228,16876578,16877639,16878390,16878961	1.000000
testis_male_adult_54_years	chr15	75625118	75625125	75625118	-	High_confidence	10	10	18	0.668376	3.794653	chr15	75624759	75625075	SINE|Alu|AluSq	-	chr15	75617519	75625179	SNUPN|ENST00000563793.1	-	75617519,75620893,75624714	75617552,75621056,75625179	0.888889
testis_male_adult_54_years	chr4	70763619	70763656	70763619	+	RAMPAGE_only	2	2	10	0.371320	3.321928	chr4	70763601	70763658	LINE|L2|L2a	-	chr4	70734433	70807102	RUFY3|ENST00000502653.5	+	70734433,70741626,70762518,70763551,70764474,70768537,70773510,70775167,70778368,70783090,70784795,70788805,70789494,70793784,70794794,70800140,70802955,70804347,70806515	70734593,70741680,70762692,70763669,70764576,70768661,70773572,70775233,70778438,70783183,70784879,70788973,70789592,70793904,70794894,70800205,70802983,70804416,70807102	1.000000
testis_male_adult_54_years	chr18	9342976	9342977	9342976	+	RAMPAGE_only	11	12	13	0.482716	3.334679	chr18	9342635	9343159	LINE|L1|HAL1	-	chr18	9334849	9397067	TWSG1|ENST00000581641.1	+	9334849,9337192,9359971,9396279	9334920,9337352,9360071,9397067	0.923077
testis_male_adult_54_years	chr2	11426406	11426426	11426412	-	High_confidence	54	54	154	5.718330	4.884465	chr2	11426226	11426640	LTR|ERV1|MER48	+	chr2	11426102	11426473	STRG.30665.1	-	11426102	11426473	0.766234
testis_male_adult_54_years	chr7	128648788	128648810	128648809	+	RAMPAGE_only	3	3	9	0.334188	3.169925	chr7	128648764	128648951	SINE|Alu|AluJb	-	chr7	128641240	128660998	LINC01000|NR_024368.1	+	128641240,128642216,128648791,128651037,128651188	128641379,128642281,128648982,128651095,128660998	0.666667
testis_male_adult_54_years	chr14	47343207	47343235	47343207	-	High_confidence	5	5	19	0.705508	4.037401	chr14	47342878	47343220	LTR|Gypsy|LTR104_Mam	+	chr14	47058599	47343192	MDGA2|ENST00000482848.7	-	47058599,47059194,47061248,47096853,47131713,47144077,47218020,47301410,47343097	47058996,47059380,47061578,47097123,47131846,47144274,47218190,47301550,47343192	0.736842
testis_male_adult_54_years	chr17	44067581	44067590	44067589	-	High_confidence	4	4	8	0.297056	3.000000	chr17	44067467	44067627	SINE|MIR|MIRb	-	chr17	44034634	44067619	LSM12|ENST00000591247.5	-	44034634,44037411,44040146,44063800,44066463,44067442	44036300,44037538,44040256,44063934,44066733,44067619	0.625000
testis_male_adult_54_years	chr9	115744212	115744269	115744264	-	High_confidence	37	49	239	8.874551	6.832718	chr9	115743858	115744555	LTR|ERV1|MER50B	-	chr9	115739339	115744256	AL691420.1|ENST00000644298.1	-	115739339,115741461,115742952,115744156	115739874,115741562,115743070,115744256	0.548117
testis_male_adult_54_years	chr18	7946875	7946898	7946878	+	High_confidence	95	95	220	8.169042	6.157504	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.872727
testis_male_adult_54_years	chr4	121170072	121170093	121170072	-	RAMPAGE_only	6	6	17	0.631244	3.750000	chr4	121170045	121170313	LINE|L2|L2c	+	chr4	121131407	121164340	TNIP3|NM_024873.5	-	121131407,121138623,121141815,121142725,121147048,121150102,121154550,121157093,121158686,121161135,121164059	121132662,121138684,121141914,121142776,121147174,121150219,121154679,121157243,121158752,121161216,121164340	0.647059
testis_male_adult_54_years	chr5	9903666	9903691	9903690	-	RAMPAGE_only	4	4	11	0.408452	3.459432	chr5	9903618	9903820	LINE|L1|L1PBa	-	chr5	9862922	9902678	LINC02112|ENST00000606169.1	-	9862922,9870099,9883922,9902651	9863112,9870224,9883999,9902678	0.818182
testis_male_adult_54_years	chr21	42021995	42022024	42022023	+	High_confidence	32	33	109	4.047389	5.872533	chr21	42022002	42022069	LTR|ERVL|MER54A	-	chr21	42022022	42024866	ZNF295-AS1|ENST00000455701.1	+	42022022,42024305	42022211,42024866	0.743119
testis_male_adult_54_years	chr16	55481537	55481582	55481575	+	High_confidence	4	4	22	0.816904	4.011365	chr16	55480995	55481659	LTR|ERV1|MER41B	-	chr16	55481556	55506691	MMP2|NM_001127891.2	+	55481556,55482908,55484015,55485298,55485603,55488542,55489650,55491800,55493157,55496925,55498288,55502778,55505338	55481878,55483135,55484164,55485427,55485777,55488716,55489824,55491956,55493293,55497062,55498448,55502888,55506691	0.909091
testis_male_adult_54_years	chr11	115734128	115734132	115734128	-	High_confidence	10	15	20	0.742640	3.892407	chr11	115733937	115734317	LTR|ERVL-MaLR|MLT1B	-	chr11	115731941	115734742	AP002991.2|ENST00000623807.1	-	115731941	115734742	0.950000
testis_male_adult_54_years	chr17	69151166	69151230	69151214	-	High_confidence	13	15	74	2.747769	5.048587	chr17	69150866	69151321	LINE|L2|L2b	+	chr17	69148179	69150452	ABCA10|ENST00000524231.5	-	69148179,69149032,69149987	69148925,69149088,69150452	0.567568
testis_male_adult_54_years	chr2	174548025	174548026	174548025	-	High_confidence	91	91	113	4.195917	5.871005	chr2	174547413	174549111	LTR|ERV1|LTR12C	-	chr2	174547052	174548173	STRG.51489.1	-	174547052	174548173	0.964602
testis_male_adult_54_years	chr21	32308861	32308893	32308870	+	High_confidence	9	9	37	1.373884	4.201772	chr21	32308651	32308918	LTR|ERVL-MaLR|MLT1M	+	chr21	32308826	32312937	STRG.351021.1	+	32308826,32311683	32309154,32312937	0.594595
testis_male_adult_54_years	chr17	82208039	82208049	82208039	-	RAMPAGE_only	2	3	8	0.297056	2.521641	chr17	82207808	82208047	LTR|ERVL|MER21A	+	chr17	82157447	82212813	CCDC57|ENST00000392343.3	-	82157447,82163199,82171700,82172637,82178473,82179026,82183773,82188218,82193755,82193981,82195262,82198313,82201537,82207730,82212784	82157948,82163357,82171853,82172860,82178605,82179189,82183932,82188419,82193830,82194139,82195364,82198422,82201952,82208048,82212813	0.875000
testis_male_adult_54_years	chr12	62305908	62305979	62305908	+	High_confidence	4	4	24	0.891168	4.095795	chr12	62305734	62306281	LTR|ERVL-MaLR|MLT1F	+	chr12	62305594	62325933	USP15|ENST00000546694.1	+	62305594,62314789,62321463,62325871	62306058,62314916,62321609,62325933	0.583333
testis_male_adult_54_years	chr12	15624786	15624824	15624786	-	RAMPAGE_only	2	2	8	0.297056	3.000000	chr12	15624456	15624793	LINE|L2|L2a	+	chr12	15621273	15662274	EPS8|ENST00000542903.1	-	15621273,15623157,15624226,15631441,15640702,15641721,15647126,15650822,15654144,15658078,15658496,15660613,15662025,15662192	15621430,15623287,15624407,15631664,15640846,15641830,15647260,15651006,15654293,15658153,15658585,15660740,15662099,15662274	0.500000
testis_male_adult_54_years	chr5	83102811	83102827	83102811	+	High_confidence	3	3	14	0.519848	3.807355	chr5	83102848	83103023	SINE|MIR|MIR	+	chr5	83103393	83311069	STRG.120858.6	+	83103393,83111027,83195769,83203551,83204814,83210679,83258529,83310788	83105058,83111203,83195936,83203707,83204921,83210755,83258677,83311069	0.857143
testis_male_adult_54_years	chr12	25592912	25592935	25592912	-	High_confidence	3	3	19	0.705508	3.787144	chr12	25592194	25596534	LINE|L1|L1PBa1	+	chr12	25585993	25592925	AC022367.1|ENST00000546101.1	-	25585993,25592494	25586098,25592925	0.526316
testis_male_adult_54_years	chr7	132758983	132759007	132759006	+	High_confidence	16	19	43	1.596676	4.832561	chr7	132758833	132759181	LTR|ERVL-MaLR|MLT1B	+	chr7	132758969	132760632	LOC100506937|NR_134332.1	+	132758969,132760317	132759405,132760632	0.930233
testis_male_adult_54_years	chr12	114241984	114242006	114242005	-	High_confidence	4	4	11	0.408452	2.921928	chr12	114241815	114242066	LTR|ERVL-MaLR|MLT1K	+	chr12	114238186	114241981	STRG.261428.1	-	114238186,114240326,114241727	114239400,114240625,114241981	0.909091
testis_male_adult_54_years	chr1	158140731	158140776	158140743	+	High_confidence	4	6	13	0.482716	3.392747	chr1	158140736	158141252	LTR|ERVL|MER70B	-	chr1	158140952	158183126	STRG.17683.1	+	158140952,158160417,158162761,158163946,158173220,158180818,158181454,158182031,158182877	158141966,158160534,158162958,158164125,158173443,158181162,158181721,158182310,158183126	0.538462
testis_male_adult_54_years	chr22	33725006	33725041	33725006	+	High_confidence	61	64	215	7.983382	6.743103	chr22	33724720	33725164	LINE|L2|L2a	-	chr22	33725013	33737775	LARGE-AS1|ENST00000453336.5	+	33725013,33725611,33726115,33727490,33732255,33737563	33725101,33725756,33726197,33727588,33733685,33737775	0.827907
testis_male_adult_54_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	22	22	27	1.002564	4.250827	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.925926
testis_male_adult_54_years	chr3	12883665	12883666	12883665	+	High_confidence	131	134	149	5.532670	5.810659	chr3	12882707	12883979	LTR|ERV1|LTR12C	+	chr3	12883687	12889451	STRG.63179.2	+	12883687,12884802	12884005,12889451	0.872483
testis_male_adult_54_years	chr4	1351573	1351596	1351595	+	RAMPAGE_only	6	6	13	0.482716	3.584963	chr4	1351373	1351688	SINE|Alu|AluYf1	-	chr4	1347705	1386244	UVSSA|ENST00000507531.5	+	1347705,1348089,1349523,1351714,1353029,1354734,1355116,1366319,1375363,1376033,1380046,1380879,1383765,1385867	1347887,1348189,1349854,1351835,1353413,1354847,1355245,1366431,1375508,1376168,1380230,1380988,1383940,1386244	0.769231
testis_male_adult_54_years	chr12	99079963	99079988	99079987	-	High_confidence	37	40	155	5.755462	6.204132	chr12	99079722	99080237	LTR|ERV1|LTR45C	+	chr12	98956351	99079964	ANKS1B|ENST00000557083.1	-	98956351,99053156,99079744	98956404,99053309,99079964	0.658065
testis_male_adult_54_years	chr7	11193340	11193341	11193340	+	High_confidence	8	8	11	0.408452	3.121928	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.636364
testis_male_adult_54_years	chr11	8766627	8766699	8766692	-	High_confidence	12	15	71	2.636373	5.227438	chr11	8766683	8766760	DNA|DNA|MER126	-	chr11	8711967	8766701	ST5|ENST00000626808.2	-	8711967,8712550,8713997,8714609,8715602,8717740,8726072,8750620,8766636	8712036,8712735,8714042,8714706,8715818,8717892,8726209,8750725,8766701	0.507042
testis_male_adult_54_years	chr4	162022732	162022767	162022766	+	High_confidence	22	25	75	2.784901	5.691014	chr4	162022778	162023083	LINE|L1|L1PB4	+	chr4	162022732	162047567	AC023136.1|ENST00000513093.1	+	162022732,162032577,162035209,162041853,162043182,162047372	162022909,162032753,162035399,162042091,162043311,162047567	0.506667
testis_male_adult_54_years	chr12	9875722	9875723	9875722	-	High_confidence	171	172	178	6.609498	5.518460	chr12	9875306	9876605	LTR|ERV1|LTR12C	-	chr12	9875353	9875735	STRG.246643.1	-	9875353	9875735	0.702247
testis_male_adult_54_years	chr7	2762316	2762317	2762316	+	High_confidence	22	23	31	1.151092	4.444188	chr7	2762313	2762473	SINE|MIR|MIRc	-	chr7	2761825	2766207	STRG.157401.1	+	2761825,2764711	2763164,2766207	0.838710
testis_male_adult_54_years	chr11	83195906	83195934	83195933	-	High_confidence	14	14	62	2.302185	4.721567	chr11	83195845	83196141	SINE|Alu|AluY	-	chr11	83195410	83195777	STRG.238856.1	-	83195410	83195777	0.903226
testis_male_adult_54_years	chr13	54799794	54799821	54799820	+	RAMPAGE_only	7	7	25	0.928300	3.816403	chr13	54799141	54800235	LTR|ERV1|LTR12E	-	chr13	54797051	54898514	STRG.268884.1	+	54797051,54800654,54898223	54800259,54800815,54898514	0.840000
testis_male_adult_54_years	chr7	39013071	39013109	39013105	+	High_confidence	6	6	17	0.631244	3.381580	chr7	39007527	39013552	LINE|L1|L1PA2	-	chr7	39013080	39373708	POU6F2|ENST00000517348.1	+	39013080,39085859,39204234,39207391,39339641,39373476	39013559,39086031,39204326,39207620,39340015,39373708	0.882353
testis_male_adult_54_years	chr1	6820197	6820223	6820197	+	RAMPAGE_only	14	15	26	0.965432	3.613337	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.653846
testis_male_adult_54_years	chr8	81439402	81439418	81439417	+	High_confidence	24	25	106	3.935993	5.807826	chr8	81437506	81439542	LINE|L1|L1PB1	-	chr8	81439416	81462788	STRG.187584.1	+	81439416,81439990,81461454	81439630,81440093,81462788	0.745283
testis_male_adult_54_years	chr10	3647478	3647479	3647478	-	High_confidence	8	8	12	0.445584	3.584963	chr10	3647277	3647788	DNA|TcMar-Tigger|MER44B	+	chr10	3646346	3647466	STRG.212395.1	-	3646346,3647222	3646516,3647466	0.583333
testis_male_adult_54_years	chrX	119942900	119942924	119942900	+	High_confidence	3	3	8	0.297056	2.750000	chrX	119942772	119942943	LINE|L2|L2c	-	chrX	119942833	119992809	RHOXF1P3|ENST00000640298.1	+	119942833,119980250,119990330,119991366,119992500	119943926,119980376,119991135,119991701,119992809	0.875000
testis_male_adult_54_years	chr15	29657474	29657478	29657474	-	High_confidence	93	94	140	5.198482	6.181803	chr15	29657326	29657807	LTR|ERV1|LTR12F	-	chr15	29654224	29657670	STRG.290884.2	-	29654224	29657670	0.935714
testis_male_adult_54_years	chr19	11895297	11895372	11895297	+	RAMPAGE_only	6	8	50	1.856601	4.971653	chr19	11895205	11895760	LTR|ERVL|MER54A	-	chr19	11887783	11917789	STRG.332879.15	+	11887783,11903904,11904648	11903699,11903965,11917789	0.980000
testis_male_adult_54_years	chr6	44955430	44955470	44955430	-	High_confidence	12	12	51	1.893733	5.554778	chr6	44955284	44955624	LINE|L1|L1PBa	+	chr6	44829766	44955510	SUPT3H|ENST00000371458.1	-	44829766,44932652,44953309,44954494,44955224	44829876,44932763,44953417,44954607,44955510	0.686275
testis_male_adult_54_years	chr15	58934884	58934891	58934890	-	RAMPAGE_only	5	5	14	0.519848	3.546594	chr15	58934680	58934900	SINE|MIR|MIRc	-	chr15	58879044	58933676	SLTM|NM_024755.3	-	58879044,58883625,58886974,58887225,58888384,58889429,58890280,58892896,58893278,58893820,58894089,58894432,58897114,58898802,58899468,58901259,58912562,58913498,58916934,58932355,58933403	58880107,58883786,58887119,58887540,58888555,58889554,58890461,58893060,58893364,58893987,58894193,58894582,58897233,58898852,58899937,58901287,58912610,58913696,58916999,58932443,58933676	0.785714
testis_male_adult_54_years	chr12	30677264	30677269	30677264	-	High_confidence	2	4	8	0.297056	2.807355	chr12	30677188	30677854	DNA|TcMar-Tigger|Tigger3b	+	chr12	30628980	30677244	IPO8|NM_001190995.1	-	30628980,30631894,30634082,30636981,30639514,30649136,30652191,30652966,30656683,30661140,30662326,30663488,30665219,30665728,30666174,30669182,30670961,30673989,30674658,30676497,30676895	30630957,30632011,30634286,30637187,30639735,30649232,30652289,30653092,30656750,30661266,30662487,30663654,30665309,30665845,30666251,30669282,30671096,30674074,30674753,30676587,30677244	0.875000
testis_male_adult_54_years	chr12	116848534	116848546	116848534	+	RAMPAGE_only	2	2	6	0.222792	2.584963	chr12	116848352	116848807	LINE|L2|L2a	+	chr12	116758640	116851762	STRG.261963.6	+	116758640,116766813,116779194,116833791,116835959,116836180,116849313	116760621,116766914,116779348,116833941,116836025,116836282,116851762	0.500000
testis_male_adult_54_years	chr7	154058632	154058724	154058723	-	High_confidence	10	11	39	1.448148	4.157859	chr7	154058657	154058734	LTR|ERV1|HERVE-int	+	chr7	154055584	154059561	AC006019.1|ENST00000425591.1	-	154055584,154057432	154055925,154059561	1.000000
testis_male_adult_54_years	chr21	23857080	23857115	23857114	+	High_confidence	28	28	103	3.824597	5.594289	chr21	23856830	23857544	LTR|ERV1|LTR12_	+	chr21	23857146	23857839	STRG.349449.1	+	23857146	23857839	0.825243
testis_male_adult_54_years	chr15	24536726	24536762	24536758	+	RAMPAGE_only	2	2	10	0.371320	2.641604	chr15	24536274	24536914	LTR|ERVL|ERVL47-int	+	chr15	24547795	24566780	PWRN1|ENST00000565295.5	+	24547795,24548383,24566088,24566655	24547924,24548470,24566212,24566780	0.500000
testis_male_adult_54_years	chr5	172816607	172816630	172816607	+	High_confidence	116	119	197	7.315006	6.611003	chr5	172816337	172816632	LINE|L2|L2b	-	chr5	172816620	172819958	AC110011.1|ENST00000518260.1	+	172816620,172819481	172816725,172819958	0.791878
testis_male_adult_54_years	chr9	82757421	82757460	82757421	+	RAMPAGE_only	2	3	11	0.408452	2.913977	chr9	82751810	82757866	LINE|L1|L1PA3	-	chr9	81977613	82780194	AL162726.3|ENST00000637606.1	+	81977613,82273406,82277048,82281581,82349803,82426291,82428198,82491951,82496714,82779878	81977868,82273481,82277162,82281650,82349848,82426376,82428293,82492054,82496858,82780194	0.545455
testis_male_adult_54_years	chr7	48708498	48708521	48708520	+	High_confidence	52	53	278	10.322699	6.595335	chr7	48708556	48708983	LTR|ERVL|MER74A	+	chr7	48708439	48711582	STRG.163853.2	+	48708439,48711156	48708914,48711582	0.971223
testis_male_adult_54_years	chr4	188460156	188460184	188460183	-	High_confidence	4	5	8	0.297056	2.750000	chr4	188460124	188460594	LTR|ERV1|LTR12_	+	chr4	188457297	188460157	STRG.110659.1	-	188457297,188459913	188457619,188460157	0.875000
testis_male_adult_54_years	chr10	69538036	69538037	69538036	-	RAMPAGE_only	28	28	33	1.225356	3.717896	chr10	69537858	69538218	LTR|ERVL-MaLR|MLT1A	-	chr10	69536404	69539132	STRG.220919.1	-	69536404,69537456,69537930,69538855	69536724,69537590,69538688,69539132	0.878788
testis_male_adult_54_years	chr4	138312545	138312575	138312545	-	High_confidence	31	32	53	1.967997	5.019471	chr4	138312315	138312788	LTR|ERVL|MER70A	-	chr4	138298855	138312658	LINC00498|ENST00000504369.1	-	138298855,138312293	138298945,138312658	0.528302
testis_male_adult_54_years	chr11	78139262	78139272	78139262	-	High_confidence	2	2	6	0.222792	2.584963	chr11	78139217	78139324	SINE|MIR|MIRc	-	chr11	78121136	78139258	ALG8|ENST00000530910.5	-	78121136,78124020,78127357,78138709	78121174,78124214,78127436,78139258	1.000000
testis_male_adult_54_years	chr15	27161031	27161101	27161031	-	High_confidence	4	4	20	0.742640	3.921928	chr15	27160578	27161012	LINE|L1|HAL1	-	chr15	27157614	27161314	STRG.290440.1	-	27157614,27158265,27158947,27159808,27161021	27158155,27158396,27159047,27159861,27161314	0.900000
testis_male_adult_54_years	chr13	51191890	51191932	51191908	-	High_confidence	3	3	13	0.482716	3.418296	chr13	51191785	51192194	LTR|ERV1|MER57B1	-	chr13	51190067	51192037	STRG.268154.1	-	51190067	51192037	0.923077
testis_male_adult_54_years	chr1	20028515	20028586	20028515	+	High_confidence	65	72	113	4.195917	6.134283	chr1	20028464	20028814	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.557522
testis_male_adult_54_years	chr7	39194604	39194675	39194662	+	High_confidence	9	9	28	1.039696	4.494680	chr7	39194379	39195079	LTR|ERV1|LTR12_	+	chr7	39194648	39195083	STRG.162759.1	+	39194648	39195083	0.928571
testis_male_adult_54_years	chr1	205422013	205422056	205422055	-	High_confidence	597	603	1032	38.320235	7.314842	chr1	205421923	205422209	DNA|DNA|UCON78	-	chr1	205381377	205422054	LEMD1|ENST00000367153.8	-	205381377,205384287,205416231,205419229,205420454,205421989	205381856,205384364,205416296,205419352,205420574,205422054	0.916667
testis_male_adult_54_years	chr3	127537939	127537972	127537939	+	High_confidence	9	9	21	0.779772	4.106603	chr3	127537879	127538047	SINE|MIR|MIR	-	chr3	127537713	127539093	STRG.77026.1	+	127537713	127539093	0.904762
testis_male_adult_54_years	chr18	7362117	7362136	7362135	+	High_confidence	6	6	13	0.482716	3.251629	chr18	7360496	7362489	LTR|ERV1|LTR12C	+	chr18	7362015	7363175	STRG.324079.1	+	7362015	7363175	0.923077
testis_male_adult_54_years	chr9	30575004	30575044	30575032	-	High_confidence	8	8	32	1.188224	4.438067	chr9	30574921	30576073	LTR|ERV1|LTR2752	+	chr9	30388934	30575012	LINC01242|ENST00000629369.1	-	30388934,30390303,30446695,30574382	30390100,30390357,30446811,30575012	0.875000
testis_male_adult_54_years	chr3	146498103	146498104	146498103	+	High_confidence	76	76	81	3.007693	3.947760	chr3	146497124	146498517	LTR|ERV1|LTR12C	+	chr3	146498111	146498642	STRG.79791.1	+	146498111	146498642	0.913580
testis_male_adult_54_years	chr10	26906843	26906844	26906843	+	High_confidence	18	18	19	0.705508	3.794653	chr10	26905372	26907116	LTR|ERV1|LTR12C	+	chr10	26906857	26909616	STRG.215791.11	+	26906857,26909410	26907096,26909616	0.842105
testis_male_adult_54_years	chr8	38867730	38867769	38867752	-	High_confidence	2	2	12	0.445584	3.459432	chr8	38867704	38868481	LTR|ERV1|LTR17	-	chr8	38864072	38868205	STRG.183331.1	-	38864072,38866616	38864273,38868205	0.500000
testis_male_adult_54_years	chr19	20423701	20423704	20423703	-	High_confidence	15	22	32	1.188224	4.055025	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20396068	20423864	STRG.335427.8	-	20396068,20408949,20423480	20399038,20409045,20423864	0.812500
testis_male_adult_54_years	chr2	190354510	190354568	190354510	+	RAMPAGE_only	3	3	11	0.408452	3.321928	chr2	190354360	190354700	LTR|ERVL-MaLR|MLT1B	+	chr2	190356516	190366895	INPP1|ENST00000409027.1	+	190356516,190360038,190362626,190366694	190356617,190360306,190362687,190366895	0.636364
testis_male_adult_54_years	chr19	15835796	15835805	15835804	-	High_confidence	43	51	105	3.898861	5.598640	chr19	15835690	15836170	LTR|ERV1|LTR7C	+	chr19	15827044	15835787	STRG.333236.1	-	15827044,15828269,15835526	15827224,15829412,15835787	0.800000
testis_male_adult_54_years	chr10	89888057	89888078	89888057	+	RAMPAGE_only	3	3	17	0.631244	3.969816	chr10	89888002	89888814	LTR|ERV1|LTR8B	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.529412
testis_male_adult_54_years	chr7	140270973	140270974	140270973	-	High_confidence	36	36	37	1.373884	4.815623	chr7	140270658	140271868	LTR|ERV1|LTR12C	-	chr7	140260065	140270973	STRG.175229.1	-	140260065,140262648,140270658	140260460,140262766,140270973	0.729730
testis_male_adult_54_years	chr3	148280878	148280902	148280886	+	High_confidence	58	58	128	4.752897	6.065187	chr3	148279782	148281080	LTR|ERV1|LTR12C	-	chr3	148280890	148363067	STRG.80029.1	+	148280890,148288934,148312110,148362197	148281109,148289043,148312252,148363067	0.718750
testis_male_adult_54_years	chr1	10431134	10431158	10431134	+	High_confidence	2	2	12	0.445584	3.584963	chr1	10431042	10431162	SINE|MIR|MIRb	+	chr1	10431122	10442502	CENPS|ENST00000462462.1	+	10431122,10440346,10442264	10431401,10440413,10442502	0.833333
testis_male_adult_54_years	chr2	238723460	238723483	238723460	+	RAMPAGE_only	2	2	7	0.259924	2.807355	chr2	238723345	238723725	LTR|ERV1|MER90	-	chr2	238722237	238724609	STRG.60019.1	+	238722237	238724609	0.714286
testis_male_adult_54_years	chr6	163671625	163671658	163671634	+	High_confidence	142	147	538	19.977022	7.402965	chr6	163671518	163671708	LTR|ERVL-MaLR|MLT1I	+	chr6	163671626	163770037	STRG.155859.2	+	163671626,163703905,163759224	163671696,163704005,163770037	0.778810
testis_male_adult_54_years	chr9	105700957	105700969	105700957	+	High_confidence	25	28	94	3.490409	5.436461	chr9	105700976	105701213	LTR|ERVL|LTR50	+	chr9	105700983	105776612	TMEM38B|ENST00000374688.5	+	105700983,105705596,105721536,105722533,105748072,105773864	105701643,105705753,105721721,105722621,105748190,105776612	0.904255
testis_male_adult_54_years	chr18	10915815	10915850	10915829	-	RAMPAGE_only	3	3	11	0.408452	3.095795	chr18	10915777	10916836	LTR|ERV1|LTR12C	-	chr18	10857064	10890692	PIEZO2|ENST00000579899.1	-	10857064,10871252,10890479	10857211,10871415,10890692	0.909091
testis_male_adult_54_years	chr8	124171528	124171564	124171528	-	High_confidence	98	100	145	5.384142	6.608856	chr8	124171344	124171724	LTR|ERVL-MaLR|THE1D	-	chr8	124046070	124171522	FER1L6-AS2|NR_103547.1	-	124046070,124047556,124058787,124060167,124171427	124046776,124047693,124058972,124060792,124171522	0.703448
testis_male_adult_54_years	chr8	82160532	82160551	82160550	-	High_confidence	3	3	7	0.259924	2.807355	chr8	82160239	82160973	LTR|ERV1|LTR27D	+	chr8	82108564	82160542	AC027701.1|ENST00000520988.1	-	82108564,82151757,82160416	82108713,82151941,82160542	0.714286
testis_male_adult_54_years	chr7	111155413	111155414	111155413	-	High_confidence	4	4	7	0.259924	2.584963	chr7	111155079	111155450	LTR|ERVL|LTR86A2	+	chr7	111131111	111155646	STRG.171105.1	-	111131111	111155646	0.857143
testis_male_adult_54_years	chr11	322610	322657	322656	-	High_confidence	5	5	37	1.373884	4.722967	chr11	322580	322928	LTR|ERV1|LTR76	-	chr11	319772	322727	STRG.228484.4	-	319772,320564,322595	319990,320772,322727	0.675676
testis_male_adult_54_years	chr18	66258391	66258416	66258404	-	High_confidence	8	10	25	0.928300	4.168296	chr18	66258261	66258528	SINE|Alu|AluYe5	+	chr18	66257690	66258408	STRG.328968.1	-	66257690	66258408	0.800000
testis_male_adult_54_years	chr15	80497527	80497540	80497527	-	High_confidence	26	26	40	1.485280	5.003056	chr15	80497086	80497648	LTR|ERVL-MaLR|MLT1E3	+	chr15	80496374	80497521	STRG.298130.2	-	80496374	80497521	0.825000
testis_male_adult_54_years	chr4	106321570	106321596	106321570	+	RAMPAGE_only	8	8	31	1.151092	4.671781	chr4	106320774	106322302	Retroposon|SVA|SVA_A	+	chr4	106316506	106349225	AIMP1|NM_001142416.1	+	106316506,106324984,106327450,106328075,106331671,106336868,106347525	106316594,106325118,106327564,106328243,106331883,106337037,106349225	0.838710
testis_male_adult_54_years	chr1	205858233	205858329	205858328	+	RAMPAGE_only	8	8	34	1.262488	4.051602	chr1	205858178	205862406	LTR|ERVK|HERVK14-int	+	chr1	205813323	205867770	STRG.23521.1	+	205813323,205853787,205858142	205813585,205853874,205867770	1.000000
testis_male_adult_54_years	chr9	121313981	121314021	121314020	+	RAMPAGE_only	19	19	67	2.487845	4.630074	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.985075
testis_male_adult_54_years	chr9	74771405	74771422	74771405	-	RAMPAGE_only	6	6	23	0.854036	3.969002	chr9	74771024	74771564	LINE|L2|L2a	+	chr9	74760680	74789516	STRG.203994.4	-	74760680,74771702,74775882,74782361,74782678,74785873,74788613	74763134,74771835,74776076,74782476,74782853,74786125,74789516	0.782609
testis_male_adult_54_years	chr5	100401386	100401387	100401386	+	High_confidence	7	7	9	0.334188	2.725481	chr5	100401295	100401560	LTR|ERVL|ERV3-16A3_I-int	-	chr5	100401440	100408899	AC113385.1|ENST00000511468.1	+	100401440,100407254,100408798	100401783,100407373,100408899	0.888889
testis_male_adult_54_years	chr3	86267360	86267395	86267388	-	High_confidence	5	8	23	0.854036	4.061482	chr3	86267234	86267876	LINE|L1|L1ME1	-	chr3	86264554	86267361	AC108733.1|ENST00000479244.1	-	86264554,86266995	86264893,86267361	0.826087
testis_male_adult_54_years	chr6	116001505	116001506	116001505	-	RAMPAGE_only	45	49	60	2.227921	5.137732	chr6	116001390	116001850	LTR|ERV1|MER101	+	chr6	115931148	116060758	FRK|ENST00000606080.1	-	115931148,115943019,115944243,115956451,115967550,115968575,116003876,116059967	115942625,115943185,115944425,115956610,115967719,115968739,116003998,116060758	0.883333
testis_male_adult_54_years	chr10	9878030	9878095	9878094	-	High_confidence	14	14	30	1.113960	4.461092	chr10	9877868	9878570	LTR|ERV1|MER50B	+	chr10	9785917	9878093	STRG.213766.2	-	9785917,9787401,9790252,9877747	9786265,9787483,9790788,9878093	0.766667
testis_male_adult_54_years	chr1	156337697	156337711	156337710	-	High_confidence	4	4	9	0.334188	2.500000	chr1	156337637	156337783	SINE|MIR|MIRb	-	chr1	156324979	156338214	CCT3|ENST00000415548.1	-	156324979,156333215,156333546,156334712,156334867,156335826,156338153	156325089,156333284,156333643,156334775,156334918,156335888,156338214	0.888889
testis_male_adult_54_years	chr1	111324546	111324547	111324546	-	High_confidence	23	23	25	0.928300	4.175736	chr1	111324450	111324596	SINE|MIR|MIRc	-	chr1	111323834	111324539	STRG.14555.1	-	111323834,111324486	111324369,111324539	0.800000
testis_male_adult_54_years	chr3	17860856	17860877	17860876	+	High_confidence	3	3	9	0.334188	2.500000	chr3	17858274	17861391	LINE|L1|L1HS	-	chr3	17860790	18041541	STRG.64191.1	+	17860790,18013654,18016617,18041448	17861402,18013774,18016711,18041541	0.666667
testis_male_adult_54_years	chr1	105618929	105618957	105618934	-	High_confidence	31	37	104	3.861729	5.570008	chr1	105618760	105619072	LINE|L2|L2a	+	chr1	105589695	105618935	LINC01676|ENST00000610126.2	-	105589695,105603276,105604162,105605934,105612899,105618858	105589785,105603558,105604265,105606089,105612944,105618935	0.961538
testis_male_adult_54_years	chr6	2763019	2763020	2763019	-	High_confidence	94	94	108	4.010257	4.897927	chr6	2762643	2763832	LTR|ERV1|LTR12C	-	chr6	2761051	2763506	STRG.134584.1	-	2761051	2763506	0.990741
testis_male_adult_54_years	chr14	104750832	104750833	104750832	-	High_confidence	35	35	38	1.411016	4.810673	chr14	104750447	104752026	LTR|ERV1|LTR12C	-	chr14	104750265	104751300	STRG.289110.1	-	104750265	104751300	0.894737
testis_male_adult_54_years	chr7	68534572	68534573	68534572	-	High_confidence	58	58	70	2.599241	5.199408	chr7	68534166	68535655	LTR|ERV1|LTR12C	-	chr7	68533101	68534584	STRG.164925.1	-	68533101,68534084	68533343,68534584	0.914286
testis_male_adult_54_years	chr6	110189876	110189920	110189884	-	High_confidence	28	60	170	6.312442	6.322779	chr6	110189478	110190008	LINE|L2|L2	+	chr6	110185447	110189908	STRG.149158.1	-	110185447,110189551	110185528,110189908	0.758824
testis_male_adult_54_years	chr19	45862624	45862631	45862624	-	High_confidence	2	2	6	0.222792	2.584963	chr19	45862393	45862941	LINE|L2|L2b	-	chr19	45848749	45862551	SYMPK|ENST00000602061.5	-	45848749,45852311,45852481,45854174,45854390,45862486	45848876,45852385,45852535,45854240,45854507,45862551	0.500000
testis_male_adult_54_years	chr10	17337151	17337154	17337151	+	RAMPAGE_only	37	43	61	2.265053	4.913655	chr10	17336966	17337341	LTR|ERVL-MaLR|MSTA	+	chr10	17374935	17377458	STRG.214217.1	+	17374935,17377012	17375149,17377458	0.573770
testis_male_adult_54_years	chr2	228684677	228684700	228684677	-	High_confidence	4	4	10	0.371320	3.321928	chr2	228684125	228685399	LINE|L1|L1MCa	+	chr2	228683536	228684580	AC012070.1|ENST00000442062.1	-	228683536,228684284	228683667,228684580	0.700000
testis_male_adult_54_years	chr2	232890990	232891005	232890999	-	High_confidence	15	18	59	2.190789	5.530395	chr2	232890857	232891264	LINE|L2|L2c	+	chr2	232878689	232890980	STRG.59505.3	-	232878689,232881145,232882185,232883310,232883980,232885279,232888032,232890933	232879679,232881250,232882265,232883466,232884144,232885369,232888107,232890980	0.779661
testis_male_adult_54_years	chr15	66354122	66354123	66354122	-	RAMPAGE_only	7	7	7	0.259924	2.521641	chr15	66354028	66355027	LINE|L2|L2a	+	chr15	66336383	66356685	TIPIN|ENST00000566524.5	-	66336383,66341149,66349059,66349314,66352128,66352814,66356638	66337181,66341356,66349123,66349437,66352207,66352955,66356685	1.000000
testis_male_adult_54_years	chr6	27283256	27283258	27283257	-	High_confidence	25	29	41	1.522412	4.953056	chr6	27282664	27283727	DNA|TcMar-Mariner|HSMAR1	-	chr6	27282823	27283247	STRG.138913.1	-	27282823	27283247	0.756098
testis_male_adult_54_years	chr11	9993966	9993967	9993966	-	High_confidence	5	7	7	0.259924	2.807355	chr11	9993915	9994007	DNA|hAT-Ac|OldhAT1	+	chr11	9853706	9993104	SBF2|ENST00000420722.2	-	9853706,9856457,9858225,9895942,9961956,9963772,9968340,9989496,9992989	9853712,9856720,9858396,9896011,9962106,9963882,9968545,9989595,9993104	0.714286
testis_male_adult_54_years	chr5	14578247	14578248	14578247	+	High_confidence	111	111	118	4.381577	5.508267	chr5	14577095	14578661	LTR|ERV1|LTR12C	+	chr5	14578261	14580057	STRG.113411.1	+	14578261	14580057	0.966102
testis_male_adult_54_years	chr5	102671628	102671673	102671672	-	High_confidence	3	4	13	0.482716	3.546594	chr5	102671229	102677260	LINE|L1|L1PA2	+	chr5	102609155	102671559	LINC00491|ENST00000510145.1	-	102609155,102671226	102609766,102671559	0.615385
testis_male_adult_54_years	chr14	35073453	35073465	35073453	+	RAMPAGE_only	7	8	17	0.631244	3.852169	chr14	35073363	35074087	DNA|TcMar-Tigger|Tigger2	-	chr14	35046403	35083383	FAM177A1|NM_173607.3	+	35046403,35053277,35077149,35078926,35081021	35046628,35053451,35077216,35079024,35083383	0.529412
testis_male_adult_54_years	chr11	62600241	62600244	62600241	-	RAMPAGE_only	3	3	8	0.297056	2.807355	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62593214	62601840	STRG.235405.5	-	62593214,62594258,62594515,62594980,62595263,62595751,62596009,62596278,62596457,62596636,62597315,62597609,62598023,62598326,62600165,62600621,62601422	62594040,62594407,62594634,62595070,62595492,62595891,62596107,62596337,62596532,62596825,62597415,62597712,62598141,62598639,62600259,62600689,62601840	0.500000
testis_male_adult_54_years	chr1	33875508	33875523	33875508	+	RAMPAGE_only	2	2	8	0.297056	2.521641	chr1	33875469	33876079	LTR|ERV1|MER90a	-	chr1	33870225	33893748	STRG.3894.3	+	33870225,33870871,33875431,33878169,33882162,33884569,33888956,33893506	33870494,33871008,33875592,33878350,33882234,33884814,33889130,33893748	0.500000
testis_male_adult_54_years	chr10	132331638	132331661	132331638	-	High_confidence	4	4	17	0.631244	3.875000	chr10	132331498	132331624	LTR|ERVL|LTR16E1	-	chr10	132330280	132331837	STK32C|ENST00000456004.1	-	132330280,132331435	132330485,132331837	0.823529
testis_male_adult_54_years	chr12	124374442	124374456	124374442	-	RAMPAGE_only	2	3	6	0.222792	2.584963	chr12	124374395	124374495	LINE|CR1|L3b	+	chr12	124372459	124388824	NCOR2|ENST00000448614.1	-	124372459,124378236,124385744,124388684	124372610,124378384,124385887,124388824	0.666667
testis_male_adult_54_years	chr22	17247887	17247888	17247887	-	High_confidence	4	5	7	0.259924	2.584963	chr22	17247827	17247944	LTR|ERVL-MaLR|MLT1L	+	chr22	17247219	17247949	STRG.353466.1	-	17247219	17247949	0.571429
testis_male_adult_54_years	chr7	100355169	100355175	100355174	+	RAMPAGE_only	9	9	17	0.631244	3.875000	chr7	100355125	100355232	LINE|L1|L1MD	-	chr7	100353735	100399957	STRG.169954.22	+	100353735,100355142,100356749,100358219,100358689,100359336,100367348,100371203,100374043,100389887,100397878,100399290,100399580,100399784	100354012,100355240,100356883,100358366,100359079,100359537,100367617,100373720,100374433,100390106,100397912,100399340,100399612,100399957	0.882353
testis_male_adult_54_years	chr7	67100980	67100986	67100980	+	RAMPAGE_only	10	12	21	0.779772	4.121928	chr7	67100869	67101415	LTR|ERV1|LTR19B	-	chr7	67067137	67238640	TYW1|ENST00000495971.1	+	67067137,67083429,67098540,67117482,67183125,67195169,67238307	67067403,67083539,67098718,67117618,67183236,67195337,67238640	0.523810
testis_male_adult_54_years	chr9	132282851	132282892	132282851	-	RAMPAGE_only	26	26	71	2.636373	4.754443	chr9	132282600	132282860	LINE|L1|HAL1ME	-	chr9	132261439	132290570	STRG.211184.10	-	132261439,132269402,132269614,132271709,132275255,132277059,132278069,132281466,132286422,132288235,132288549	132264985,132269489,132269702,132271808,132275420,132277152,132278257,132283413,132286494,132288351,132290570	0.985915
testis_male_adult_54_years	chr16	20989114	20989115	20989114	-	High_confidence	553	554	590	21.907887	5.972221	chr16	20988699	20990207	LTR|ERV1|LTR12C	-	chr16	20986410	20989189	STRG.305049.7	-	20986410,20987692,20987941,20988427	20987448,20987849,20988065,20989189	0.938983
testis_male_adult_54_years	chr1	57926143	57926160	57926143	-	RAMPAGE_only	2	2	7	0.259924	2.521641	chr1	57926142	57926236	SINE|MIR|MIR	+	chr1	57883891	57884173	STRG.7546.1	-	57883891	57884173	0.714286
testis_male_adult_54_years	chr2	6649602	6649609	6649608	-	High_confidence	5	6	12	0.445584	3.277613	chr2	6649522	6649574	SINE|MIR|MIR3	-	chr2	6635833	6649329	MIR7515HG|ENST00000588330.5	-	6635833,6638090,6638277,6638716,6639050,6649210	6636244,6638153,6638361,6638867,6639277,6649329	0.500000
testis_male_adult_54_years	chr7	112392114	112392115	112392114	+	High_confidence	5	5	8	0.297056	2.521641	chr7	112392126	112392359	LINE|L2|L2a	+	chr7	112391352	112400799	STRG.171350.1	+	112391352	112400799	0.750000
testis_male_adult_54_years	chr1	205858140	205858196	205858195	+	RAMPAGE_only	4	4	19	0.705508	3.683542	chr1	205858178	205862406	LTR|ERVK|HERVK14-int	+	chr1	205813323	205867770	STRG.23521.1	+	205813323,205853787,205858142	205813585,205853874,205867770	0.894737
testis_male_adult_54_years	chr1	165892627	165892641	165892627	+	High_confidence	74	109	195	7.240742	6.620819	chr1	165892277	165892629	LTR|ERVL|LTR33C	-	chr1	165892651	165908100	UCK2|ENST00000462329.5	+	165892651,165896189,165903181,165905920,165907683	165892774,165896332,165903279,165905969,165908100	0.948718
testis_male_adult_54_years	chr7	38886416	38886437	38886416	-	RAMPAGE_only	2	2	10	0.371320	3.321928	chr7	38886032	38888928	LINE|L1|L1P2	+	chr7	38725554	38909174	VPS41|ENST00000395969.6	-	38725554,38726908,38728541,38728691,38741984,38743401,38745558,38752175,38754701,38754894,38756837,38758353,38763454,38765579,38767536,38771197,38772521,38774114,38776678,38789800,38795464,38796744,38817816,38821202,38862544,38869145,38898090,38909153	38726326,38726988,38728586,38728791,38742121,38743542,38745613,38752313,38754752,38754936,38756982,38758481,38763547,38765661,38767598,38771254,38772637,38774244,38776776,38789867,38795611,38796864,38817882,38821265,38862622,38869253,38898129,38909174	0.600000
testis_male_adult_54_years	chr2	148024002	148024032	148024023	+	RAMPAGE_only	7	7	31	1.151092	4.548394	chr2	148023928	148024095	SINE|MIR|MIR3	-	chr2	148021237	148028649	MBD5|ENST00000478190.3	+	148021237,148024965	148021684,148028649	0.516129
testis_male_adult_54_years	chr16	57226797	57226810	57226809	+	RAMPAGE_only	7	7	12	0.445584	3.251629	chr16	57226260	57226901	LTR|ERV1|MER41B	-	chr16	57224421	57239046	RSPRY1|ENST00000563073.1	+	57224421,57227341,57230710,57231166,57235123,57238878	57224479,57227453,57230813,57231319,57235228,57239046	0.750000
testis_male_adult_54_years	chr7	45778205	45778253	45778205	+	RAMPAGE_only	4	4	11	0.408452	3.277613	chr7	45778108	45778536	LTR|ERVL-MaLR|MLT1D	-	chr7	45773594	45783157	GTF2IP13|ENST00000438487.1	+	45773594,45779274,45781494,45782644,45783070	45773673,45779340,45781553,45782739,45783157	1.000000
testis_male_adult_54_years	chr10	42654662	42654693	42654692	-	RAMPAGE_only	3	3	8	0.297056	3.000000	chr10	42654446	42654969	LTR|ERV1|HERV1_LTRa	+	chr10	42589083	42638837	ZNF33B|NM_001305040.1	-	42589083,42613887,42614281,42631928,42632294,42636919,42638473	42594699,42613968,42614358,42632024,42632439,42636972,42638837	0.625000
testis_male_adult_54_years	chr3	132434148	132434164	132434148	+	RAMPAGE_only	6	6	20	0.742640	3.787144	chr3	132433931	132434236	SINE|Alu|AluY	+	chr3	132417708	132467346	DNAJC13|ENST00000486798.5	+	132417708,132434537,132446474,132447320,132447897,132450646,132453297,132453598,132454065,132456234,132456500,132456662,132457268,132460249,132461049,132462466,132463695,132465994,132466298,132467169	132417760,132434618,132446550,132447470,132447939,132450847,132453504,132453694,132454157,132456401,132456580,132456832,132457368,132460357,132461205,132462523,132463817,132466070,132466394,132467346	0.800000
testis_male_adult_54_years	chrX	125154764	125154776	125154775	-	RAMPAGE_only	2	2	7	0.259924	2.584963	chrX	125154598	125156024	LTR|ERV1|LTR12C	-	chrX	124894239	124963822	STRG.368363.1	-	124894239,124895980,124963536	124894352,124896241,124963822	0.714286
testis_male_adult_54_years	chr6	107044180	107044207	107044206	+	RAMPAGE_only	3	3	10	0.371320	2.947703	chr6	107044140	107044239	LINE|L1|L1PB4	-	chr6	107028568	107051335	C6orf203|ENST00000625458.1	+	107028568,107030024,107039748,107044259,107051056	107028797,107030107,107040230,107044332,107051335	0.900000
testis_male_adult_54_years	chr6	20321088	20321093	20321088	+	RAMPAGE_only	7	8	18	0.668376	3.302723	chr6	20320048	20321457	LTR|ERV1|LTR12C	+	chr6	20319655	20333114	STRG.137688.1	+	20319655,20331705	20321575,20333114	0.944444
testis_male_adult_54_years	chr17	42662783	42662816	42662783	+	RAMPAGE_only	4	4	15	0.556980	3.664498	chr17	42662805	42662965	LTR|ERVL|MER21A	+	chr17	42659306	42666822	STRG.317454.7	+	42659306,42659833,42660148,42660638,42663376,42665475,42665677,42666086,42666322,42666602	42659552,42659946,42660316,42663052,42663503,42665562,42665827,42666239,42666484,42666822	0.533333
testis_male_adult_54_years	chr19	35597323	35597324	35597323	+	High_confidence	8	10	10	0.371320	2.921928	chr19	35597295	35597586	SINE|Alu|AluSx	-	chr19	35597792	35601479	STRG.335724.2	+	35597792,35600640,35601304	35597817,35600754,35601479	1.000000
testis_male_adult_54_years	chr16	15798662	15798675	15798664	-	RAMPAGE_only	42	56	86	3.193353	5.474052	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.895349
testis_male_adult_54_years	chr20	48888179	48888185	48888184	-	RAMPAGE_only	6	8	12	0.445584	3.418296	chr20	48888028	48888379	LTR|ERVL-MaLR|THE1A	-	chr20	48624251	48827883	PREX1|ENST00000371941.3	-	48624251,48627547,48627860,48629448,48630727,48632276,48632495,48634675,48636462,48637710,48639765,48642167,48642406,48644408,48645850,48649299,48649995,48650893,48651395,48652585,48653360,48655289,48657039,48658135,48659918,48666282,48676192,48679359,48679650,48681234,48688656,48690946,48692671,48700752,48708259,48726289,48734545,48745024,48747808,48827641	48625927,48627615,48627963,48629621,48630794,48632391,48632639,48634775,48636683,48637752,48639894,48642258,48642489,48644497,48646057,48649576,48650206,48651055,48651583,48652706,48653497,48655375,48657188,48658228,48660061,48666355,48676268,48679409,48679754,48681335,48688804,48691096,48692790,48700886,48708421,48726391,48734650,48745147,48747880,48827883	0.666667
testis_male_adult_54_years	chr16	22278386	22278407	22278401	+	RAMPAGE_only	7	7	28	1.039696	4.351823	chr16	22278232	22278411	LTR|ERVL-MaLR|MSTD	-	chr16	22206281	22288732	EEF2K|ENST00000263026.9	+	22206281,22225653,22244629,22248754,22250653,22251150,22256747,22257252,22257642,22258493,22260461,22263109,22264817,22266389,22266687,22273625,22280197,22283886	22206679,22225975,22244730,22248815,22250691,22251322,22256897,22257385,22257770,22258695,22260529,22263187,22264880,22266524,22266876,22273750,22280376,22288732	0.964286
testis_male_adult_54_years	chr2	231985944	231985957	231985944	+	RAMPAGE_only	4	4	15	0.556980	3.521641	chr2	231985784	231986350	LTR|ERVL|MLT2B3	+	chr2	231961707	232087552	DIS3L2|ENST00000441279.5	+	231961707,232014847,232015513,232024276,232029978,232087486	231961765,232014979,232015671,232024330,232030080,232087552	0.666667
testis_male_adult_54_years	chr15	48467128	48467135	48467128	-	High_confidence	2	3	6	0.222792	2.584963	chr15	48467042	48467108	SINE|MIR|MIRb	-	chr15	48410073	48467991	FBN1|ENST00000559133.5	-	48410073,48412568,48415535,48420686,48421557,48421951,48425368,48425738,48427566,48427881,48428345,48430670,48432865,48434593,48436960,48437321,48437767,48441720,48444540,48445375,48446705,48448767,48452561,48456636,48460245,48463081,48463898,48465567,48465789,48467937	48411379,48412743,48415767,48420806,48421686,48422068,48425491,48425864,48427773,48427943,48428471,48430802,48432988,48434713,48437077,48437387,48437917,48441846,48444660,48445504,48446822,48448893,48452684,48456762,48460317,48463240,48464021,48465693,48465858,48467991	0.500000
testis_male_adult_54_years	chr16	57641604	57641686	57641608	+	High_confidence	8	9	38	1.411016	4.839776	chr16	57641565	57641864	SINE|Alu|AluSz6	-	chr16	57640964	57651468	ADGRG1|ENST00000563414.5	+	57640964,57641590,57650252,57651199	57641064,57641708,57650351,57651468	0.947368
testis_male_adult_54_years	chr1	119146709	119146737	119146709	+	RAMPAGE_only	4	5	11	0.408452	2.913977	chr1	119146664	119146740	DNA|hAT-Charlie|MER117	-	chr1	119140729	119275973	AL359915.2|ENST00000418015.1	+	119140729,119141746,119146952,119150564,119261446,119262901,119275187	119140793,119141813,119147069,119150746,119261716,119262944,119275973	0.909091
testis_male_adult_54_years	chr2	3389652	3389694	3389652	+	High_confidence	14	19	89	3.304749	5.809619	chr2	3389174	3390211	LTR|ERV1|LTR28C	-	chr2	3389693	3460303	TRAPPC12|ENST00000441983.5	+	3389693,3401776,3421880,3424524,3443778,3457620,3460262	3389779,3401893,3421994,3424663,3443891,3457693,3460303	0.539326
testis_male_adult_54_years	chr2	191682564	191682593	191682575	+	RAMPAGE_only	6	7	19	0.705508	3.836592	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191686177	NABP1|ENST00000435931.1	+	191678989,191681945,191683728,191684229,191685598	191679128,191682017,191683804,191684278,191686177	0.842105
testis_male_adult_54_years	chr6	111909392	111909393	111909392	-	High_confidence	106	109	121	4.492973	6.009499	chr6	111909299	111909562	LINE|L2|L2b	+	chr6	111900607	111909400	STRG.149531.2	-	111900607,111901742,111908925,111909239	111901141,111901850,111909215,111909400	0.867769
testis_male_adult_54_years	chr16	20805903	20805909	20805903	-	High_confidence	2	3	8	0.297056	2.521641	chr16	20805458	20806036	LTR|ERV1|LTR10C	+	chr16	20803424	20806105	ERI2|ENST00000562277.5	-	20803424,20803602,20805714	20803511,20803670,20806105	0.875000
testis_male_adult_54_years	chr2	130058278	130058335	130058334	-	RAMPAGE_only	6	6	18	0.668376	3.381580	chr2	130057068	130058619	LTR|ERVL-MaLR|MSTA-int	-	chr2	130056395	130128578	STRG.46537.4	-	130056395,130063037,130077080,130085813,130086342,130088066,130093437,130099469,130100675,130102109,130108008,130110542,130111994,130114880,130115213,130119994,130128042	130060694,130075572,130077201,130085995,130086387,130088137,130093508,130099636,130100720,130102180,130108079,130110680,130112101,130115054,130115328,130127954,130128578	0.944444
testis_male_adult_54_years	chr9	2264426	2264470	2264458	+	RAMPAGE_only	13	14	58	2.153657	4.920328	chr9	2264225	2264991	LTR|ERV1|LTR17	-	chr9	2273473	2274081	STRG.195988.1	+	2273473	2274081	0.844828
testis_male_adult_54_years	chr17	4143196	4143215	4143199	+	High_confidence	91	92	231	8.577495	6.487997	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.909091
testis_male_adult_54_years	chr11	65367406	65367438	65367437	+	High_confidence	9	10	26	0.965432	4.392747	chr11	65367362	65367667	SINE|Alu|AluY	-	chr11	65367437	65375299	AP000944.1|ENST00000533886.1	+	65367437,65367926,65375230	65367815,65368043,65375299	1.000000
testis_male_adult_54_years	chr14	73713573	73713707	73713573	-	High_confidence	17	17	120	4.455841	5.235408	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	0.950000
testis_male_adult_54_years	chr6	10434828	10434867	10434850	-	High_confidence	15	15	48	1.782337	4.777569	chr6	10434600	10434992	LTR|ERVL-MaLR|MLT1B	-	chr6	10429717	10434835	LINC00518|ENST00000479822.1	-	10429717,10434247,10434641	10430313,10434363,10434835	0.708333
testis_male_adult_54_years	chr7	134432360	134432379	134432378	-	High_confidence	10	11	16	0.594112	3.640224	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.625000
testis_male_adult_54_years	chr14	95866474	95866486	95866474	-	High_confidence	8	10	20	0.742640	4.142664	chr14	95866046	95866596	LTR|ERVL-MaLR|MLT1F2	+	chr14	95855747	95866464	AL133167.1|ENST00000553963.1	-	95855747,95866179	95855977,95866464	0.550000
testis_male_adult_54_years	chr7	96358408	96358418	96358408	+	High_confidence	6	6	19	0.705508	4.142664	chr7	96358348	96359121	LTR|ERV1|LTR17	-	chr7	96358576	96359733	STRG.169232.1	+	96358576	96359733	0.842105
testis_male_adult_54_years	chr20	53529455	53529456	53529455	-	RAMPAGE_only	11	11	14	0.519848	3.700440	chr20	53529309	53529493	LTR|Gypsy|MamGypLTR1d	-	chr20	53525877	53526186	STRG.346400.1	-	53525877	53526186	0.500000
testis_male_adult_54_years	chr13	23415318	23415333	23415318	-	RAMPAGE_only	4	4	8	0.297056	3.000000	chr13	23415019	23415332	SINE|Alu|AluSx	-	chr13	23328829	23433701	SACS|ENST00000455470.6	-	23328829,23341444,23353784,23354518,23358334,23365165,23368401,23371077,23375118,23411219,23433614	23329484,23341690,23353876,23356007,23358481,23365277,23368487,23371165,23375269,23411740,23433701	1.000000
testis_male_adult_54_years	chr18	40245878	40245879	40245878	+	High_confidence	125	143	163	6.052518	6.160321	chr18	40245577	40246305	LTR|ERV1|LTR12	+	chr18	40245864	40247403	STRG.326420.1	+	40245864,40246514	40246306,40247403	0.717791
testis_male_adult_54_years	chr3	39779531	39779547	39779531	+	High_confidence	5	5	14	0.519848	3.521641	chr3	39779576	39780159	LTR|ERV1|LTR12E	+	chr3	39779581	39780271	STRG.66083.1	+	39779581	39780271	0.500000
testis_male_adult_54_years	chr6	36540199	36540211	36540204	-	RAMPAGE_only	4	7	18	0.668376	4.169925	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36480438	36541680	STRG.140685.3	-	36480438,36497779,36498362,36507499,36515337,36521733,36524340,36525590,36540071	36496805,36497875,36506644,36507602,36517840,36521817,36524463,36525642,36541680	1.000000
testis_male_adult_54_years	chr17	17487262	17487301	17487300	+	RAMPAGE_only	42	42	82	3.044825	4.787200	chr17	17486169	17487716	LTR|ERV1|LTR12C	+	chr17	17485021	17488372	MED9|ENST00000624097.1	+	17485021	17488372	0.975610
testis_male_adult_54_years	chr2	21636869	21636908	21636907	-	High_confidence	2	2	7	0.259924	2.807355	chr2	21636002	21637196	LINE|L2|L2a	+	chr2	21607464	21637197	AC009411.2|ENST00000648747.1	-	21607464,21636042,21636268	21607910,21636144,21637197	1.000000
testis_male_adult_54_years	chr17	28928272	28928292	28928291	-	High_confidence	12	14	19	0.705508	4.058814	chr17	28928124	28928367	LTR|ERVL-MaLR|MLT1H1	+	chr17	28921794	28928290	PHF12|ENST00000578900.6	-	28921794,28923908,28926990,28928197	28921808,28924302,28927063,28928290	0.526316
testis_male_adult_54_years	chr6	112880099	112880130	112880122	+	High_confidence	8	8	22	0.816904	4.321928	chr6	112879825	112880495	LTR|ERV1|MER52C	-	chr6	112880067	112924375	STRG.149674.1	+	112880067,112883040,112900364,112912876,112921084	112880838,112883111,112900487,112912990,112924375	0.772727
testis_male_adult_54_years	chr1	167812151	167812152	167812151	-	RAMPAGE_only	5	5	7	0.259924	2.584963	chr1	167811810	167814668	LINE|L1|L1M4c	+	chr1	167809645	167848489	ADCY10|ENST00000485964.5	-	167809645,167810724,167818071,167818362,167822023,167823007,167824475,167824650,167829266,167832986,167833969,167834446,167845562,167845984,167848360	167809839,167810913,167818267,167818412,167822141,167823123,167824572,167824855,167829423,167833162,167834077,167834694,167845853,167846263,167848489	0.571429
testis_male_adult_54_years	chr3	8439737	8439781	8439737	+	High_confidence	2	2	9	0.334188	2.500000	chr3	8439017	8441246	Retroposon|SVA|SVA_D	+	chr3	8439127	8441205	STRG.62462.1	+	8439127	8441205	0.777778
testis_male_adult_54_years	chr19	20936609	20936638	20936637	+	High_confidence	39	40	192	7.129346	6.716927	chr19	20936356	20936935	LTR|ERV1|LTR10C	-	chr19	20936663	20950697	ZNF85|ENST00000601023.2	+	20936663,20948743	20937361,20950697	0.958333
testis_male_adult_54_years	chr2	17727135	17727148	17727135	-	RAMPAGE_only	2	2	7	0.259924	2.584963	chr2	17727115	17727593	LTR|ERVL|MLT2A1	+	chr2	17716749	17753803	STRG.31451.8	-	17716749,17717087,17720939,17721141,17725256,17726388,17731740,17738220,17741611,17745826,17752977	17716905,17718223,17721038,17721261,17725358,17731139,17731877,17738326,17741729,17745951,17753803	0.714286
testis_male_adult_54_years	chr13	75506192	75506223	75506222	-	RAMPAGE_only	10	10	23	0.854036	4.349649	chr13	75506011	75506518	LTR|ERV1|MER101	+	chr13	75310034	75482699	STRG.271520.2	-	75310034,75326196,75327751,75336920,75341124,75341495,75349169,75356146,75359768,75362025,75481269	75312898,75326423,75327826,75337040,75341235,75341587,75349302,75356251,75359858,75362607,75482699	0.521739
testis_male_adult_54_years	chr3	19702551	19702591	19702576	-	High_confidence	3	3	19	0.705508	3.932138	chr3	19702399	19703772	LTR|ERV1|LTR12C	+	chr3	19610784	19702956	STRG.64493.1	-	19610784,19700927,19702342	19616053,19700985,19702956	0.684211
testis_male_adult_54_years	chr1	212226603	212226638	212226617	-	High_confidence	6	7	29	1.076828	4.494680	chr1	212226614	212226752	SINE|MIR|MIRb	+	chr1	212225279	212226538	AL451060.1|ENST00000412221.5	-	212225279,212226435	212225513,212226538	0.827586
testis_male_adult_54_years	chr2	95863934	95863941	95863940	-	RAMPAGE_only	3	3	8	0.297056	2.807355	chr2	95863571	95864148	LINE|L1|L1MC1	+	chr2	95852289	95859929	ANKRD36C|ENST00000488721.5	-	95852289,95855265,95857308,95859860	95853861,95856180,95857492,95859929	0.500000
testis_male_adult_54_years	chr18	58460415	58460416	58460415	+	High_confidence	55	58	74	2.747769	5.207436	chr18	58459211	58460806	LTR|ERV1|LTR12C	+	chr18	58460424	58461973	STRG.328277.1	+	58460424	58461973	0.864865
testis_male_adult_54_years	chr13	21138407	21138430	21138407	+	High_confidence	15	16	45	1.670940	3.910819	chr13	21138310	21138948	LINE|L1|L1ME3B	-	chr13	21138411	21147319	STRG.264471.1	+	21138411,21140276,21140885,21146804,21147185	21138457,21140681,21140995,21146927,21147319	0.977778
testis_male_adult_54_years	chr4	66003258	66003288	66003287	+	High_confidence	21	21	81	3.007693	4.949685	chr4	66002796	66006138	LINE|L1|L1MA5	-	chr4	66003306	66045436	STRG.95592.1	+	66003306,66045012	66003362,66045436	0.950617
testis_male_adult_54_years	chr1	229901129	229901134	229901133	+	High_confidence	9	11	17	0.631244	3.625000	chr1	229901076	229901425	LINE|L1|L1ME1	+	chr1	229901100	229901512	STRG.26502.1	+	229901100	229901512	0.529412
testis_male_adult_54_years	chr15	34964453	34964462	34964461	-	High_confidence	40	44	62	2.302185	5.119525	chr15	34964435	34964482	DNA|hAT-Charlie|MER20B	-	chr15	34944303	34964453	AQR|ENST00000560117.1	-	34944303,34948263,34952884,34960773,34964233	34944428,34948384,34952920,34960814,34964453	0.677419
testis_male_adult_54_years	chr13	44413559	44413588	44413587	-	RAMPAGE_only	3	3	10	0.371320	3.121928	chr13	44413391	44414764	LTR|ERV1|LTR12C	+	chr13	44411898	44414919	STRG.267328.1	-	44411898	44414919	0.900000
testis_male_adult_54_years	chr11	125895226	125895227	125895226	-	RAMPAGE_only	8	8	8	0.297056	2.750000	chr11	125895047	125895200	SINE|Alu|AluSc8	-	chr11	125893484	125896330	PUS3|ENST00000530811.5	-	125893484,125895223,125895906	125894286,125895789,125896330	1.000000
testis_male_adult_54_years	chr13	101425839	101425840	101425839	+	RAMPAGE_only	10	10	11	0.408452	2.921928	chr13	101425668	101426033	LTR|ERVL-MaLR|MSTA	+	chr13	101452592	101716446	ITGBL1|NM_001271755.1	+	101452592,101453882,101575423,101579286,101583215,101598152,101692584,101706755,101714437,101715562	101452931,101454100,101575546,101579427,101583356,101598299,101692701,101706902,101714551,101716446	0.818182
testis_male_adult_54_years	chr1	194859064	194859089	194859078	-	High_confidence	8	10	41	1.522412	4.446439	chr1	194858882	194860246	LTR|ERV1|LTR12C	+	chr1	194858692	194859571	STRG.22120.1	-	194858692	194859571	0.756098
testis_male_adult_54_years	chr3	373549	373573	373549	+	High_confidence	7	8	20	0.742640	3.846439	chr3	367661	374053	LINE|L1|L1PA6	-	chr3	373595	389340	CHL1|ENST00000470880.6	+	373595,377817,382178,382473,383815,389251	373661,377942,382280,382671,383886,389340	0.800000
testis_male_adult_54_years	chr4	36641899	36641911	36641899	-	High_confidence	34	36	93	3.453277	5.637891	chr4	36641714	36642024	SINE|Alu|AluY	+	chr4	36496692	36641900	LINC02505|ENST00000505298.5	-	36496692,36498426,36582656,36584664,36615417,36641849	36497052,36498488,36582730,36584796,36615526,36641900	0.655914
testis_male_adult_54_years	chr17	2667103	2667196	2667195	+	High_confidence	39	41	120	4.455841	6.219146	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.925000
testis_male_adult_54_years	chr2	73736756	73736757	73736756	-	High_confidence	18	18	19	0.705508	3.392147	chr2	73736531	73736795	LINE|L2|L2	+	chr2	73731905	73737335	TPRKB|ENST00000470012.1	-	73731905,73732583,73734428,73737301	73732285,73732700,73734591,73737335	0.736842
testis_male_adult_54_years	chr3	1987583	1987597	1987596	-	High_confidence	5	5	11	0.408452	2.921928	chr3	1987400	1987702	SINE|Alu|AluY	+	chr3	1962380	1987470	AC018814.1|ENST00000418972.1	-	1962380,1987368	1962635,1987470	0.727273
testis_male_adult_54_years	chr1	11090842	11090854	11090849	-	RAMPAGE_only	3	3	11	0.408452	3.121928	chr1	11090746	11090885	SINE|Alu|AluJb	-	chr1	11066617	11099869	EXOSC10|ENST00000304457.11	-	11066617,11068007,11068644,11069558,11070899,11072086,11074230,11076841,11077364,11077600,11079710,11080498,11080763,11081081,11082687,11087447,11087799,11088122,11090553,11091013,11091492,11095757,11098019,11099720	11066748,11068084,11068706,11069730,11070973,11072171,11074326,11076948,11077443,11077651,11079822,11080549,11080912,11081238,11082878,11087591,11087910,11088198,11090668,11091179,11091597,11095881,11098156,11099869	0.909091
testis_male_adult_54_years	chr19	6891209	6891215	6891209	+	High_confidence	3	4	7	0.259924	2.521641	chr19	6891022	6891369	LTR|ERVL-MaLR|THE1B	+	chr19	6891149	6901955	ADGRE1|ENST00000601198.5	+	6891149,6896397,6897148,6897427,6901874	6891226,6896541,6897304,6897547,6901955	0.571429
testis_male_adult_54_years	chr6	9668480	9668481	9668480	+	High_confidence	20	20	29	1.076828	4.237291	chr6	9668154	9668906	LTR|ERV1|LTR12	+	chr6	9668585	9668945	STRG.135456.1	+	9668585	9668945	0.896552
testis_male_adult_54_years	chr15	90660190	90660229	90660221	+	High_confidence	4	4	23	0.854036	4.262692	chr15	90660024	90660493	LTR|ERVL-MaLR|MLT1F	+	chr15	90660233	90664967	LINC01585|ENST00000500496.2	+	90660233,90661392,90664354	90660824,90661483,90664967	1.000000
testis_male_adult_54_years	chr15	78437617	78437627	78437617	+	High_confidence	3	3	8	0.297056	3.000000	chr15	78437296	78437621	LINE|L2|L2	-	chr15	78437430	78465264	IREB2|ENST00000560840.5	+	78437430,78439794,78462921,78465250	78437721,78439881,78463087,78465264	0.750000
testis_male_adult_54_years	chr3	126247416	126247419	126247418	-	High_confidence	6	9	12	0.445584	3.418296	chr3	126247330	126247771	LTR|ERV1|LTR7C	+	chr3	126246561	126247203	STRG.77224.1	-	126246561	126247203	0.583333
testis_male_adult_54_years	chr6	145958759	145958760	145958759	-	RAMPAGE_only	7	7	11	0.408452	3.459432	chr6	145958706	145958829	DNA|TcMar-Tigger|Tigger3c	+	chr6	145903255	145955256	SHPRH|ENST00000433355.6	-	145903255,145913477,145918130,145919347,145921166,145922285,145922662,145923642,145924738,145926203,145927188,145933056,145934906,145935277,145940722,145941622,145943142,145945380,145946232,145947492,145948271,145950263,145952348,145954689	145910636,145913549,145918232,145919491,145921392,145922348,145922836,145923785,145924846,145926296,145927277,145933178,145935163,145935441,145940801,145941874,145943802,145945656,145946341,145947643,145948350,145950482,145952478,145955256	0.636364
testis_male_adult_54_years	chr5	30346373	30346374	30346373	+	High_confidence	93	93	101	3.750333	4.734309	chr5	30345546	30346790	LTR|ERV1|LTR12C	+	chr5	30346380	30346726	STRG.115507.1	+	30346380	30346726	0.792079
testis_male_adult_54_years	chrX	30867143	30867209	30867143	-	RAMPAGE_only	3	3	21	0.779772	3.892407	chrX	30866257	30867266	LINE|L1|L1MC3	+	chrX	30834620	30871802	TAB3|ENST00000467136.5	-	30834620,30842965,30852777,30854115,30859486,30867114,30867464,30871698	30836835,30846644,30852938,30855562,30859678,30867218,30867549,30871802	0.857143
testis_male_adult_54_years	chr1	176162895	176162963	176162936	-	RAMPAGE_only	19	20	48	1.782337	4.969002	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.541667
testis_male_adult_54_years	chr8	116531394	116531412	116531394	-	High_confidence	3	3	10	0.371320	2.947703	chr8	116530906	116532253	LTR|ERV1|LTR12C	+	chr8	116530583	116531495	STRG.192771.1	-	116530583	116531495	0.500000
testis_male_adult_54_years	chr19	44304778	44304804	44304778	-	High_confidence	3	3	7	0.259924	2.807355	chr19	44304575	44304734	SINE|MIR|MIR	-	chr19	44288804	44304968	ZNF235|ENST00000591609.1	-	44288804,44298807,44299605,44303389,44304700	44289196,44298903,44299732,44303452,44304968	0.714286
testis_male_adult_54_years	chr16	70064243	70064244	70064243	-	RAMPAGE_only	10	12	12	0.445584	3.418296	chr16	70064145	70064365	DNA|hAT-Charlie|MER20	-	chr16	69996163	70065818	PDXDC2P-NPIPB14P|ENST00000529089.1	-	69996163,69996389,70010750,70011840,70014103,70018046,70021823,70023378,70023629,70024585,70030987,70031899,70034170,70036431,70038904,70042350,70042929,70065755	69996226,69996468,70010856,70011929,70014167,70018097,70021949,70023477,70023678,70024670,70031066,70031968,70034360,70036578,70038985,70042416,70043003,70065818	0.500000
testis_male_adult_54_years	chr9	114053416	114053426	114053416	+	RAMPAGE_only	6	7	13	0.482716	3.251629	chr9	114053374	114053470	DNA|hAT-Charlie|MER5A	-	chr9	113876281	114056595	ZNF618|NM_001318042.1	+	113876281,113969116,113988320,113998258,114001995,114002623,114007349,114008343,114008476,114016694,114028732,114032644,114036299,114047892,114048650	113876413,113969160,113988580,113998354,114002073,114002662,114007439,114008379,114008554,114016784,114028972,114032728,114036377,114047994,114056595	0.923077
testis_male_adult_54_years	chr2	51221863	51221871	51221863	-	High_confidence	2	2	8	0.297056	2.750000	chr2	51221760	51222092	LTR|ERV1|LTR43B	-	chr2	51201942	51221764	NRXN1|ENST00000416262.6	-	51201942,51202990,51221670	51202314,51203161,51221764	0.875000
testis_male_adult_54_years	chr12	95862267	95862295	95862267	+	RAMPAGE_only	28	29	63	2.339317	4.207468	chr12	95861806	95862431	LINE|L1|L1MB3	-	chr12	95865078	95866451	SNRPF|ENST00000549580.1	+	95865078,95866004	95865388,95866451	0.936508
testis_male_adult_54_years	chr3	132397025	132397060	132397059	+	High_confidence	14	14	34	1.262488	4.487893	chr3	132396247	132397368	LTR|ERV1|LTR12D	+	chr3	132397132	132397624	STRG.77790.1	+	132397132	132397624	0.852941
testis_male_adult_54_years	chr1	769692	769695	769692	-	RAMPAGE_only	6	6	14	0.519848	3.093069	chr1	769362	769790	LTR|ERVL-MaLR|MLT1D	+	chr1	764722	774280	AL669831.1|ENST00000428504.2	-	764722,765143,766328,768547,774170	764800,765247,766387,768613,774280	0.928571
testis_male_adult_54_years	chr15	58851957	58851958	58851957	+	RAMPAGE_only	9	9	11	0.408452	3.095795	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	1.000000
testis_male_adult_54_years	chr5	10187735	10187736	10187735	+	High_confidence	61	64	70	2.599241	5.438022	chr5	10187402	10187938	LTR|ERV1|LTR12F	+	chr5	10187948	10188947	STRG.112522.1	+	10187948	10188947	0.885714
testis_male_adult_54_years	chr17	54439445	54439503	54439489	+	RAMPAGE_only	50	51	128	4.752897	5.621596	chr17	54439199	54439691	LTR|ERV1|LTR12F	+	chr17	54451262	54451760	STRG.319394.1	+	54451262	54451760	0.664062
testis_male_adult_54_years	chr21	15862404	15862431	15862430	+	RAMPAGE_only	5	5	14	0.519848	3.664498	chr21	15862214	15862446	DNA|TcMar-Tigger|Tigger4a	+	chr21	15842517	15874518	USP25|ENST00000449491.1	+	15842517,15847662,15849776,15864267,15866265,15870067,15874402	15842540,15847776,15849872,15864446,15866344,15870147,15874518	0.928571
testis_male_adult_54_years	chr4	187419849	187419850	187419849	-	RAMPAGE_only	17	17	18	0.668376	3.969816	chr4	187419536	187420805	LTR|ERV1|LTR12C	-	chr4	187419421	187421101	STRG.110486.1	-	187419421	187421101	0.722222
testis_male_adult_54_years	chr3	42770109	42770134	42770133	-	RAMPAGE_only	10	13	33	1.225356	4.571375	chr3	42769529	42771022	LTR|ERV1|LTR12C	+	chr3	42749814	42773243	CCDC13|ENST00000435327.2	-	42749814,42751935,42752574,42757065,42758124,42773175	42749958,42752025,42752717,42757214,42758351,42773243	0.969697
testis_male_adult_54_years	chr17	68558379	68558393	68558392	-	High_confidence	76	79	219	8.131910	6.661163	chr17	68558334	68558718	LTR|ERVL-MaLR|MSTB	+	chr17	68535112	68558390	FAM20A|ENST00000226094.9	-	68535112,68539336,68539884,68540848,68541984,68542693,68543628,68551872,68554776,68555558,68558329	68537741,68539396,68539966,68540983,68542165,68542809,68543717,68551951,68554827,68555743,68558390	0.899543
testis_male_adult_54_years	chr19	45241921	45241964	45241952	-	High_confidence	4	4	27	1.002564	4.606739	chr19	45241578	45241979	LINE|L2|L2b	+	chr19	45213068	45242040	STRG.337884.3	-	45213068,45216072,45217527,45218196,45224777,45227661,45227973,45228164,45231762,45234192,45238522,45241515	45213357,45216194,45217683,45218319,45224913,45227772,45228074,45228266,45231874,45234826,45239061,45242040	1.000000
testis_male_adult_54_years	chr19	7642286	7642316	7642315	+	High_confidence	11	14	38	1.411016	4.491220	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.684211
testis_male_adult_54_years	chr3	110889189	110889231	110889215	-	RAMPAGE_only	2	2	8	0.297056	3.000000	chr3	110888814	110890548	LINE|L1|L1HS	+	chr3	110888383	110893212	AC117402.1|ENST00000485473.1	-	110888383,110892365,110893137	110888926,110892603,110893212	0.625000
testis_male_adult_54_years	chr20	8644401	8644402	8644401	+	RAMPAGE_only	5	5	8	0.297056	2.750000	chr20	8643756	8645322	Retroposon|SVA|SVA_D	+	chr20	8628287	8884896	PLCB1|ENST00000617005.4	+	8628287,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448,8788632,8789517,8790174,8881621	8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788525,8788722,8789575,8790261,8884896	1.000000
testis_male_adult_54_years	chr3	45030114	45030148	45030147	+	High_confidence	260	263	617	22.910451	6.752251	chr3	45029937	45030150	SINE|MIR|MIRb	+	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	0.920583
testis_male_adult_54_years	chr9	123179083	123179131	123179130	-	RAMPAGE_only	14	15	38	1.411016	4.918781	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.921053
testis_male_adult_54_years	chr8	43001022	43001051	43001050	+	High_confidence	7	9	29	1.076828	3.985228	chr8	43000982	43001103	SINE|Alu|AluJo	+	chr8	43000818	43013121	HOOK3|ENST00000524839.1	+	43000818,43002106,43007846,43010304,43013050	43001086,43002141,43007929,43010405,43013121	0.620690
testis_male_adult_54_years	chr18	68264788	68264821	68264804	-	High_confidence	5	5	36	1.336752	4.712319	chr18	68264680	68264806	LINE|L2|L2	+	chr18	68258116	68264597	STRG.329233.1	-	68258116,68260280,68261624,68263498	68258565,68260374,68261670,68264597	0.833333
testis_male_adult_54_years	chr19	56230342	56230363	56230362	-	High_confidence	8	8	16	0.594112	3.773557	chr19	56230125	56230383	SINE|Alu|AluSg7	-	chr19	56221302	56230399	ZSCAN5A|NM_024303.2	-	56221302,56222590,56223630,56224662,56228251,56230284	56222326,56222741,56223834,56225173,56228439,56230399	0.875000
testis_male_adult_54_years	chr8	32029448	32029449	32029448	+	RAMPAGE_only	6	6	6	0.222792	2.584963	chr8	32029315	32029721	LTR|ERV1|MER57A1	-	chr8	32026217	32139477	NRG1-IT1|NR_104157.1	+	32026217,32029378,32139214	32026364,32029485,32139477	0.666667
testis_male_adult_54_years	chr12	104286671	104286707	104286706	+	High_confidence	12	12	31	1.151092	4.502583	chr12	104286543	104286715	DNA|hAT-Charlie|MER5B	+	chr12	104286681	104350307	TXNRD1|NM_003330.3	+	104286681,104288930,104311289,104313244,104315776,104318912,104319469,104321090,104325336,104326346,104327514,104331533,104334236,104339138,104348352	104287346,104289040,104311412,104313317,104315896,104319055,104319585,104321316,104325429,104326423,104327671,104331641,104334332,104339273,104350307	0.903226
testis_male_adult_54_years	chr8	103838783	103838804	103838787	+	RAMPAGE_only	4	4	13	0.482716	3.700440	chr8	103838783	103839073	SINE|Alu|AluY	+	chr8	103819386	104251070	RIMS2|ENST00000408894.6	+	103819386,103885297,103910133,103912052,103915494,103916413,103918440,103921671,103931262,103936550,103942772,103961064,103975349,103989304,103998184,104013441,104014505,104015423,104041328,104068511,104093470,104148606,104244915,104248700,104249486,104251023	103819629,103886223,103910201,103912172,103915594,103916537,103918487,103921784,103931393,103936722,103942926,103961133,103975506,103989421,103998250,104013621,104014615,104015456,104041358,104068612,104093643,104148848,104245057,104248813,104249588,104251070	1.000000
testis_male_adult_54_years	chr11	74851713	74851739	74851713	+	RAMPAGE_only	9	16	27	1.002564	3.480577	chr11	74851649	74851823	SINE|MIR|MIRb	+	chr11	74850038	74853993	STRG.236826.4	+	74850038	74853993	0.888889
testis_male_adult_54_years	chr14	100834619	100834708	100834707	+	High_confidence	43	43	141	5.235614	5.258633	chr14	100834648	100834738	LINE|L2|L2b	+	chr14	100833763	100861021	MEG3|ENST00000524035.5	+	100833763,100836166,100845457,100860690	100836075,100836300,100845533,100861021	1.000000
testis_male_adult_54_years	chr6	10481968	10481969	10481968	-	High_confidence	172	172	181	6.720894	5.904713	chr6	10481698	10483280	LTR|ERV1|LTR12C	-	chr6	10474499	10481955	STRG.135411.2	-	10474499,10478340,10481565	10474593,10478541,10481955	0.911602
testis_male_adult_54_years	chr12	31121301	31121338	31121301	-	RAMPAGE_only	15	15	54	2.005129	5.305542	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	STRG.250843.4	-	31111658,31112111,31112980,31114395,31114836,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31116469,31119110	0.574074
testis_male_adult_54_years	chr12	109228770	109228793	109228792	+	High_confidence	38	38	95	3.527541	5.580886	chr12	109228779	109228852	SINE|MIR|MIRb	+	chr12	109228525	109242987	STRG.261134.8	+	109228525,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436	109228861,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242987	0.926316
testis_male_adult_54_years	chr16	22091905	22091919	22091914	+	High_confidence	3	3	11	0.408452	2.913977	chr16	22091884	22092045	DNA|hAT-Charlie|MER5A	+	chr16	22092537	22156966	VWA3A|NM_173615.4	+	22092537,22096858,22097571,22100193,22100415,22103474,22109481,22110887,22115346,22116758,22117110,22118901,22120967,22121513,22123084,22123612,22126177,22131204,22131584,22132899,22134367,22138359,22140153,22141581,22142667,22144246,22146235,22148161,22149786,22150694,22152510,22155566,22155850,22156031	22092651,22096945,22097695,22100318,22100493,22103529,22109580,22110994,22115472,22116867,22117176,22119027,22121103,22121617,22123165,22123707,22126297,22131279,22131729,22133095,22134438,22138512,22140244,22141692,22142765,22144384,22146344,22148306,22149931,22150846,22152634,22155664,22155916,22156966	0.818182
testis_male_adult_54_years	chr21	37220233	37220248	37220233	-	RAMPAGE_only	4	5	14	0.519848	3.807355	chr21	37219658	37220246	LTR|ERV1|MER51A	+	chr21	37218602	37221513	STRG.351506.1	-	37218602,37219566	37219393,37221513	1.000000
testis_male_adult_54_years	chr10	72353794	72353818	72353807	+	High_confidence	3	3	9	0.334188	2.947703	chr10	72353746	72353808	SINE|MIR|MIR3	-	chr10	72353860	72357428	STRG.220946.1	+	72353860,72356869	72356829,72357428	0.888889
testis_male_adult_54_years	chr14	103417270	103417280	103417275	+	High_confidence	4	4	18	0.668376	3.836592	chr14	103416804	103417471	LINE|L2|L2	-	chr14	103417272	103465706	MARK3|ENST00000558698.5	+	103417272,103428386,103448918,103451917,103457141,103462404,103465556	103417323,103428440,103448967,103451983,103457212,103462461,103465706	0.666667
testis_male_adult_54_years	chr8	57214237	57214296	57214295	+	RAMPAGE_only	26	30	112	4.158785	5.110518	chr8	57213634	57214467	LTR|ERV1|MER50-int	-	chr8	57193619	57220236	STRG.184749.4	+	57193619,57193884,57210733,57212877,57215108,57218269,57220110	57193689,57206354,57212583,57214932,57217976,57219623,57220236	0.964286
testis_male_adult_54_years	chr7	99797192	99797193	99797192	-	RAMPAGE_only	5	5	7	0.259924	2.807355	chr7	99796313	99797193	LINE|L1|L1P3	-	chr7	99757675	99784265	CYP3A4|ENST00000336411.6	-	99757675,99760818,99762040,99763854,99766376,99767130,99768353,99769767,99770121,99772589,99778027,99779991,99784010	99758228,99760981,99762267,99764015,99766443,99767258,99768502,99769856,99770235,99772689,99778080,99780085,99784265	0.571429
testis_male_adult_54_years	chr3	194708445	194708472	194708471	+	High_confidence	42	44	117	4.344445	6.172618	chr3	194708003	194708522	LTR|ERVL-MaLR|MLT1F	-	chr3	194708420	194782168	LINC01968|ENST00000423318.1	+	194708420,194744573,194745534,194779461	194709147,194744689,194745631,194782168	0.649573
testis_male_adult_54_years	chr7	150034532	150034569	150034532	+	High_confidence	14	15	44	1.633808	5.333241	chr7	150034133	150034733	LTR|ERV1|HERVE-int	-	chr7	150034265	150045092	STRG.177026.4	+	150034265,150035421,150037600,150037816,150039104,150044749	150035259,150036817,150037735,150038713,150042012,150045092	0.977273
testis_male_adult_54_years	chr18	72919846	72919866	72919846	-	High_confidence	17	17	72	2.673505	5.005004	chr18	72918248	72920682	LINE|L1|L1MA3	-	chr18	72913458	72919868	STRG.329941.1	-	72913458	72919868	1.000000
testis_male_adult_54_years	chr1	188013619	188013662	188013619	+	High_confidence	16	16	80	2.970561	5.466848	chr1	188012480	188013856	LTR|ERV1|LTR12C	-	chr1	188013641	188144763	AL136372.2|ENST00000648838.1	+	188013641,188042891,188097138,188143896	188013999,188042987,188097218,188144763	0.962500
testis_male_adult_54_years	chr5	62196832	62196860	62196859	+	High_confidence	3	3	9	0.334188	2.947703	chr5	62196362	62196945	LTR|ERV1|MER4A1_	-	chr5	62196885	62198185	STRG.118481.1	+	62196885,62198007	62197152,62198185	0.777778
testis_male_adult_54_years	chr2	72515753	72515781	72515771	-	High_confidence	34	34	92	3.416145	5.477871	chr2	72515744	72516190	LTR|ERVL-MaLR|MLT1C	+	chr2	72499927	72515754	EXOC6B|ENST00000485398.1	-	72499927,72513131,72514633,72515042,72515435	72499972,72513252,72514680,72515126,72515754	0.913043
testis_male_adult_54_years	chrX	120575752	120575789	120575767	-	High_confidence	17	19	71	2.636373	5.667146	chrX	120575157	120575784	LTR|Gypsy|LTR104_Mam	-	chrX	120526640	120575794	CUL4B|ENST00000404115.7	-	120526640,120530101,120532421,120534480,120535829,120536926,120538123,120538659,120539267,120540369,120541601,120542965,120543726,120544113,120544480,120545443,120546546,120547135,120557923,120560082,120574550,120575405	120526856,120530254,120532594,120534586,120535943,120537034,120538209,120538770,120539372,120540562,120541720,120543033,120543809,120544203,120544643,120545517,120546616,120547239,120558039,120560625,120574630,120575794	0.971831
testis_male_adult_54_years	chr11	83637675	83637710	83637692	+	High_confidence	7	7	28	1.039696	4.310443	chr11	83637732	83637827	LINE|L2|L2c	+	chr11	83637654	83638627	STRG.238907.1	+	83637654,83638401	83637950,83638627	0.857143
testis_male_adult_54_years	chr11	73965201	73965241	73965235	+	High_confidence	8	8	42	1.559544	4.662815	chr11	73965174	73965267	LINE|CR1|L3	-	chr11	73965235	73970366	DNAJB13|ENST00000543947.1	+	73965235,73967938,73968255,73969245,73969960,73970282	73966251,73968162,73968458,73969322,73970135,73970366	0.880952
testis_male_adult_54_years	chr13	18835984	18835997	18835984	-	RAMPAGE_only	2	2	7	0.259924	2.584963	chr13	18835787	18837773	Retroposon|SVA|SVA_A	-	chr13	18834402	18871969	ANKRD20A9P|NR_027995.1	-	18834402	18871969	0.714286
testis_male_adult_54_years	chr14	103207077	103207117	103207091	-	High_confidence	5	5	16	0.594112	3.773557	chr14	103206492	103207141	LTR|ERV1|PABL_A	+	chr14	103205695	103206859	STRG.289617.1	-	103205695	103206859	0.562500
testis_male_adult_54_years	chr4	74114183	74114207	74114183	+	High_confidence	14	16	58	2.153657	5.232728	chr4	74114150	74114286	LINE|L2|L2a	-	chr4	74114173	74242210	MTHFD2L|ENST00000429519.5	+	74114173,74114487,74125439,74160054,74174505,74175280,74199793,74201262,74225301,74241566	74114383,74114657,74125517,74160088,74174690,74175403,74199946,74201370,74225394,74242210	0.672414
testis_male_adult_54_years	chr18	33316206	33316241	33316240	-	RAMPAGE_only	3	3	9	0.334188	2.947703	chr18	33316045	33317509	LTR|ERV1|LTR12C	+	chr18	32937671	33412112	CCDC178|ENST00000406524.6	-	32937671,32974546,32983280,33092760,33211895,33215549,33223105,33224774,33226792,33245244,33266915,33267201,33293158,33323490,33333173,33346210,33348889,33356323,33370049,33389539,33397148,33412030	32938091,32974681,32983352,33092910,33212055,33215695,33223219,33224936,33226855,33245428,33267052,33267297,33293312,33323633,33333394,33346411,33348975,33356346,33370189,33389629,33397208,33412112	0.777778
testis_male_adult_54_years	chr17	2101870	2101881	2101880	-	RAMPAGE_only	4	4	9	0.334188	2.750000	chr17	2101667	2101891	SINE|MIR|MIR	-	chr17	2081915	2095112	SMG6|ENST00000575338.1	-	2081915,2085724,2094784	2081956,2085901,2095112	0.777778
testis_male_adult_54_years	chr21	37105122	37105151	37105126	+	RAMPAGE_only	6	6	24	0.891168	4.349649	chr21	37104932	37105294	LINE|L2|L2	-	chr21	37107737	37203112	TTC3|ENST00000476784.5	+	37107737,37121816,37122982,37124618,37126079,37129002,37132681,37135379,37138633,37140560,37144524,37147480,37148545,37150077,37150819,37151892,37152950,37156654,37159698,37160801,37161989,37164050,37165549,37167554,37172594,37182773,37185705,37187048,37188494,37191333,37192111,37195674,37197569,37197881,37200231,37201439	37108446,37121979,37123028,37124742,37126143,37129063,37132766,37135514,37138714,37140673,37144645,37147603,37148647,37150170,37150884,37152029,37153277,37156906,37159745,37160858,37162063,37164215,37166615,37167620,37172744,37182913,37185774,37187145,37188595,37191424,37192213,37196036,37197696,37198025,37200324,37203112	0.708333
testis_male_adult_54_years	chr3	48979425	48979447	48979425	+	RAMPAGE_only	2	2	11	0.408452	3.121928	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.909091
testis_male_adult_54_years	chr20	4740432	4740482	4740457	-	High_confidence	28	31	113	4.195917	5.940068	chr20	4740419	4740587	LINE|L2|L2b	+	chr20	4731281	4740668	PRNT|ENST00000326539.6	-	4731281,4740139	4733085,4740668	0.831858
testis_male_adult_54_years	chr4	184812203	184812259	184812258	-	High_confidence	50	50	132	4.901425	5.642859	chr4	184812232	184812305	LINE|L2|L2a	+	chr4	184755594	184812259	ACSL1|NM_001286708.1	-	184755594,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621,184768315,184770398,184773080,184773662,184773842,184776483,184776883,184780331,184783926,184788616,184803319,184812159	184757265,184757706,184757920,184760500,184762523,184763255,184764925,184765986,184766756,184768450,184770476,184773154,184773714,184773875,184776662,184776983,184780433,184783991,184788731,184803546,184812259	0.924242
testis_male_adult_54_years	chr9	86275163	86275182	86275181	-	RAMPAGE_only	15	16	64	2.376449	5.552599	chr9	86275028	86275195	SINE|MIR|MIRb	+	chr9	86265678	86282108	ISCA1|ENST00000311534.6	-	86265678,86272006,86274188,86281968	86266191,86272112,86274242,86282108	0.765625
testis_male_adult_54_years	chr2	112216432	112216433	112216432	-	RAMPAGE_only	8	8	10	0.371320	2.921928	chr2	112216324	112217086	LINE|L1|L1MC4	+	chr2	112215904	112231885	ZC3H8|ENST00000476902.1	-	112215904,112230702,112231837	112216468,112230950,112231885	0.800000
testis_male_adult_54_years	chr15	64072026	64072042	64072034	-	High_confidence	9	9	26	0.965432	4.501629	chr15	64071893	64072225	LTR|ERVL-MaLR|MLT1F	-	chr15	63983604	64072033	DAPK2|ENST00000559306.1	-	63983604,64040169,64063159,64064235,64071928	63983754,64040267,64063318,64064447,64072033	0.538462
testis_male_adult_54_years	chr3	86913275	86913318	86913315	-	RAMPAGE_only	5	5	15	0.556980	3.807355	chr3	86913226	86914138	LTR|ERVL|ERV3-16A3_I-int	+	chr3	86876387	86968631	VGLL3|ENST00000637106.1	-	86876387,86906018,86908380,86908985,86947009,86968589	86877088,86906154,86908610,86909058,86947067,86968631	0.600000
testis_male_adult_54_years	chr4	58125093	58125102	58125093	-	High_confidence	135	137	198	7.352138	5.237237	chr4	58124577	58125353	LTR|ERV1|LTR12_	-	chr4	58123777	58125137	STRG.94909.1	-	58123777	58125137	0.994949
testis_male_adult_54_years	chr2	234881807	234881819	234881811	-	RAMPAGE_only	4	5	15	0.556980	3.807355	chr2	234881789	234881864	LTR|ERVL-MaLR|MLT1M	+	chr2	234881242	234883694	STRG.59638.1	-	234881242	234883694	0.533333
testis_male_adult_54_years	chr10	27257513	27257514	27257513	+	High_confidence	438	438	579	21.499434	5.203708	chr10	27256291	27257933	LTR|ERV1|LTR12C	+	chr10	27257473	27290338	STRG.215955.2	+	27257473,27262411,27288676,27290050	27258386,27263214,27288824,27290338	0.977547
testis_male_adult_54_years	chr16	89904128	89904161	89904160	+	High_confidence	3	3	13	0.482716	3.546594	chr16	89904174	89904222	LINE|CR1|L3	+	chr16	89905008	89913627	STRG.311757.10	+	89905008,89906193,89907242,89910590,89911079,89913231	89905096,89906284,89907322,89910663,89912645,89913627	0.846154
testis_male_adult_54_years	chr17	28238661	28238667	28238661	-	RAMPAGE_only	23	24	74	2.747769	5.719390	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.662162
testis_male_adult_54_years	chr6	20301716	20301717	20301716	-	High_confidence	34	39	42	1.559544	4.855790	chr6	20301080	20302540	LTR|ERV1|LTR12C	+	chr6	20299704	20301708	STRG.137457.1	-	20299704	20301708	0.785714
testis_male_adult_54_years	chr8	116531508	116531515	116531508	-	High_confidence	4	4	8	0.297056	2.807355	chr8	116530906	116532253	LTR|ERV1|LTR12C	+	chr8	116530583	116531495	STRG.192771.1	-	116530583	116531495	0.750000
testis_male_adult_54_years	chr8	86368949	86368953	86368950	+	RAMPAGE_only	3	5	10	0.371320	2.947703	chr8	86368776	86369052	LINE|L2|L2c	+	chr8	86374040	86467476	WWP1|ENST00000265428.4	+	86374040,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	0.800000
testis_male_adult_54_years	chr19	6761156	6761182	6761181	-	High_confidence	4	4	17	0.631244	3.875000	chr19	6761110	6761508	LTR|ERVL-MaLR|MLT1J2	+	chr19	6754973	6761165	SH2D3A|ENST00000599563.5	-	6754973,6759593,6760637,6761089	6755315,6759670,6760987,6761165	0.941176
testis_male_adult_54_years	chr11	8016491	8016521	8016520	-	High_confidence	213	228	389	14.444352	5.795867	chr11	8016479	8016939	LTR|ERVL-MaLR|MLT1G	-	chr11	8011277	8016509	CASC23|NR_125366.1	-	8011277,8013573,8016074	8012268,8013730,8016509	0.956298
testis_male_adult_54_years	chr1	155478111	155478112	155478111	-	RAMPAGE_only	8	8	8	0.297056	2.750000	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
testis_male_adult_54_years	chrX	109760759	109760769	109760768	-	RAMPAGE_only	6	7	10	0.371320	3.169925	chrX	109760494	109761733	LINE|L1|L1MCa	+	chrX	109641329	109733403	ACSL4|NM_001318509.1	-	109641329,109659353,109661530,109663210,109665419,109668100,109669033,109674401,109677987,109678264,109680997,109681265,109682718,109683135,109696143,109733138	109644186,109659511,109661645,109663402,109665494,109668273,109669173,109674473,109678111,109678415,109681136,109681375,109682896,109683666,109696196,109733403	0.500000
testis_male_adult_54_years	chr9	111783492	111783493	111783492	-	High_confidence	5	5	7	0.259924	2.807355	chr9	111782434	111783697	LINE|L2|L2a	+	chr9	111686572	111783493	C9orf84|ENST00000318737.8	-	111686572,111691550,111693798,111694230,111699953,111702104,111703880,111705246,111706567,111707854,111713099,111714444,111718183,111722408,111723791,111727632,111738279,111741475,111746233,111748091,111756324,111758083,111758694,111775790,111780929,111783387	111686870,111692511,111693948,111694362,111700047,111702226,111703992,111705364,111706746,111707924,111713172,111714623,111718288,111722585,111723911,111728049,111738522,111741570,111746342,111748199,111756478,111758195,111758848,111775975,111781017,111783493	0.571429
testis_male_adult_54_years	chr8	9188998	9189021	9188998	+	High_confidence	38	41	134	4.975689	6.439725	chr8	9188663	9189149	LTR|ERV1|MER50B	+	chr8	9188998	9202858	AC022784.1|ENST00000648105.1	+	9188998,9189347,9198923,9202391	9189046,9189597,9198991,9202858	0.791045
testis_male_adult_54_years	chr18	57620020	57620021	57620020	-	RAMPAGE_only	8	8	10	0.371320	2.503258	chr18	57619700	57619987	SINE|Alu|AluJb	-	chr18	57613623	57621737	NARS|ENST00000590123.1	-	57613623,57615640,57615816,57620568,57621707	57613680,57615730,57616022,57620648,57621737	0.900000
testis_male_adult_54_years	chr14	75801038	75801066	75801038	+	RAMPAGE_only	2	2	11	0.408452	2.846439	chr14	75797848	75801364	LINE|L1|L1PB1	-	chr14	75798562	75954823	STRG.286087.15	+	75798562,75820006,75863666,75882684,75902141,75906554,75917249,75954423	75803253,75820161,75863862,75882902,75902224,75906677,75917419,75954823	0.909091
testis_male_adult_54_years	chr18	55665173	55665185	55665179	-	High_confidence	4	6	15	0.556980	3.773557	chr18	55665162	55665592	LTR|ERV1|LTR12C	+	chr18	55664047	55665130	STRG.328059.1	-	55664047	55665130	1.000000
testis_male_adult_54_years	chr17	8807345	8807361	8807360	-	High_confidence	25	26	49	1.819469	5.277569	chr17	8807289	8807664	LINE|L2|L2c	-	chr17	8802796	8807344	STRG.313701.1	-	8802796,8804040,8806789,8807184	8803429,8804153,8806971,8807344	0.755102
testis_male_adult_54_years	chr2	177845442	177845463	177845455	-	RAMPAGE_only	3	4	14	0.519848	3.664498	chr2	177844543	177846029	Retroposon|SVA|SVA_D	-	chr2	177629245	177888738	PDE11A|ENST00000389683.7	-	177629245,177663865,177669492,177675454,177680825,177697331,177701120,177711768,177727657,177728025,177769322,177816828,177817857,177820219,177840250,177875858,177888618	177629562,177663949,177669567,177675518,177680903,177697432,177701211,177711878,177727765,177728172,177769373,177816921,177817925,177820295,177840383,177875923,177888738	0.500000
testis_male_adult_54_years	chr5	117404364	117404402	117404364	+	High_confidence	3	3	13	0.482716	3.251629	chr5	117404246	117404537	SINE|Alu|AluYc	-	chr5	117403567	117405401	STRG.125733.1	+	117403567	117405401	0.769231
testis_male_adult_54_years	chr16	2610620	2610642	2610641	+	RAMPAGE_only	2	2	7	0.259924	2.584963	chr16	2610448	2610737	SINE|Alu|AluSq2	-	chr16	2603383	2630494	LOC652276|NR_015441.1	+	2603383,2610461,2613959,2628824	2603727,2611052,2614068,2630494	0.857143
testis_male_adult_54_years	chr1	167937227	167937236	167937227	-	High_confidence	4	4	8	0.297056	2.521641	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167916674	167937069	MPC2|NM_001143674.3	-	167916674,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937069	0.750000
testis_male_adult_54_years	chr5	109149650	109149661	109149650	+	RAMPAGE_only	19	20	43	1.596676	5.054172	chr5	109149433	109149829	DNA|TcMar-Tc2|Kanga2_a	+	chr5	109177516	109187667	FER|ENST00000513777.1	+	109177516,109180746,109186199,109187432	109177629,109180901,109186322,109187667	0.837209
testis_male_adult_54_years	chrX	90458563	90458611	90458610	+	High_confidence	3	3	10	0.371320	2.947703	chrX	90458603	90458703	LTR|ERV1|LTR35B	-	chrX	90458521	90459630	STRG.365933.1	+	90458521	90459630	0.800000
testis_male_adult_54_years	chr3	68500695	68500704	68500695	+	High_confidence	2	2	7	0.259924	2.584963	chr3	68500509	68500731	DNA|hAT-Charlie|MER58A	+	chr3	68500641	68505861	STRG.69386.1	+	68500641,68505546	68500934,68505861	0.714286
testis_male_adult_54_years	chr19	56367229	56367231	56367229	-	RAMPAGE_only	6	10	10	0.371320	3.169925	chr19	56367077	56367379	SINE|Alu|AluJr	+	chr19	56221302	56368383	ZSCAN5A|NM_001322072.1	-	56221302,56222590,56223630,56224662,56315913,56363234,56368208	56222326,56222741,56223834,56225048,56316268,56363398,56368383	0.900000
testis_male_adult_54_years	chr3	160383523	160383532	160383531	-	High_confidence	6	6	11	0.408452	3.095795	chr3	160383467	160383661	DNA|hAT-Charlie|MER5C1	-	chr3	160256991	160383656	IFT80|ENST00000483465.5	-	160256991,160268412,160277305,160277580,160279192,160280666,160282477,160285803,160300882,160303914,160307662,160319759,160356012,160357488,160366042,160375811,160377429,160381502,160383436	160258635,160268536,160277478,160277670,160279364,160280814,160282613,160285868,160301046,160303989,160307781,160319939,160356150,160357578,160366152,160375880,160377540,160381718,160383656	1.000000
testis_male_adult_54_years	chr2	231072232	231072255	231072232	+	RAMPAGE_only	6	6	18	0.668376	3.969816	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.833333
testis_male_adult_54_years	chr4	128289935	128289943	128289935	-	RAMPAGE_only	7	7	17	0.631244	3.280639	chr4	128289878	128290028	DNA|hAT-Charlie|MER20B	-	chr4	128269236	128288829	PGRMC2|NM_006320.4	-	128269236,128272361,128287372	128271413,128272517,128288829	0.941176
testis_male_adult_54_years	chr2	161546884	161546907	161546884	+	High_confidence	15	15	42	1.559544	4.637801	chr2	161546595	161546960	LTR|ERVL-MaLR|MSTA	-	chr2	161546914	161547809	STRG.49937.1	+	161546914	161547809	0.928571
testis_male_adult_54_years	chr16	81037186	81037201	81037186	+	High_confidence	39	41	146	5.421274	5.389224	chr16	81037175	81037367	LINE|RTE-X|L4_B_Mam	-	chr16	81037186	81047348	ATMIN|ENST00000564241.5	+	81037186,81041355,81042280,81043160	81037475,81041481,81042480,81047348	0.952055
testis_male_adult_54_years	chr12	75025970	75025985	75025978	+	High_confidence	50	50	103	3.824597	5.863512	chr12	75025941	75026019	LINE|L2|L2b	-	chr12	75025977	75042792	STRG.256323.1	+	75025977,75040957,75042638	75026200,75041142,75042792	0.524272
testis_male_adult_54_years	chr21	38121347	38121362	38121347	-	High_confidence	15	16	37	1.373884	4.226150	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	37623558	38121345	KCNJ6|ENST00000645093.1	-	37623558,37714210,37840657,38120306,38121127	37625484,37715131,37840709,38120408,38121345	0.756757
testis_male_adult_54_years	chr19	7011486	7011543	7011527	+	High_confidence	23	34	158	5.866858	6.121987	chr19	7011365	7011658	LTR|ERVL-MaLR|MLT1K	+	chr19	7011883	7012679	AC025278.2|ENST00000636139.1	+	7011883	7012679	0.588608
testis_male_adult_54_years	chr2	36513734	36513757	36513756	+	High_confidence	6	8	16	0.594112	3.640224	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.687500
testis_male_adult_54_years	chr6	35657511	35657512	35657511	-	RAMPAGE_only	8	10	11	0.408452	2.921928	chr6	35657240	35657694	LTR|ERVL-MaLR|MLT1D	-	chr6	35573589	35688915	STRG.140607.1	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35643276,35646729,35667778,35688093	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35642843,35646366,35662404,35679074,35688915	0.909091
testis_male_adult_54_years	chr13	62448258	62448271	62448258	+	High_confidence	6	6	13	0.482716	3.022055	chr13	62447197	62448462	LTR|ERV1|LTR12C	-	chr13	62447681	62448685	STRG.269998.1	+	62447681	62448685	0.846154
testis_male_adult_54_years	chr7	128897211	128897240	128897211	+	RAMPAGE_only	6	6	18	0.668376	4.087463	chr7	128897040	128897438	LTR|ERV1|PABL_A-int	+	chr7	128899729	128901314	STRG.173519.1	+	128899729	128901314	0.666667
testis_male_adult_54_years	chr8	57219412	57219448	57219412	+	High_confidence	1	1	9	0.334188	3.000000	chr8	57219003	57219613	LTR|ERV1|MER50-int	-	chr8	57219378	57220738	LINC01606|ENST00000517611.1	+	57219378,57220110,57220588	57219623,57220295,57220738	0.777778
testis_male_adult_54_years	chr9	33583177	33583203	33583202	+	RAMPAGE_only	10	11	30	1.113960	4.481728	chr9	33582567	33584130	LTR|ERVL-MaLR|MSTA-int	+	chr9	33580694	33605282	CYP4F26P|ENST00000433357.2	+	33580694,33602500,33602811,33603271,33605010	33580762,33602625,33602919,33603550,33605282	0.533333
testis_male_adult_54_years	chr4	151353443	151353447	151353443	-	High_confidence	8	8	17	0.631244	3.875000	chr4	151352921	151353772	LTR|ERV1|LTR12	-	chr4	151326969	151353462	STRG.106147.16	-	151326969,151352899	151327142,151353462	0.764706
testis_male_adult_54_years	chr13	37000283	37000294	37000283	+	High_confidence	4	4	12	0.445584	2.855389	chr13	37000063	37000363	SINE|Alu|AluY	+	chr13	37000540	37009614	EXOSC8|NM_181503.2	+	37000540,37002272,37002487,37002933,37004515,37005919,37006114,37006974,37008056,37008728,37009183	37000822,37002309,37002551,37003007,37004561,37006025,37006160,37007071,37008177,37008835,37009614	0.833333
testis_male_adult_54_years	chr1	170722576	170722603	170722576	+	High_confidence	31	34	98	3.638937	5.646797	chr1	170722388	170722618	LINE|L2|L2c	-	chr1	170722616	170736399	PRRX1|ENST00000476867.6	+	170722616,170726219,170736047	170722668,170726401,170736399	0.806122
testis_male_adult_54_years	chr16	4355592	4355593	4355592	-	High_confidence	278	280	280	10.396963	6.396860	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.857143
testis_male_adult_54_years	chr13	81226841	81226842	81226841	-	High_confidence	4	5	7	0.259924	2.807355	chr13	81226671	81227228	LTR|ERV1|LTR12_	-	chr13	81220926	81226983	STRG.272419.1	-	81220926,81226587	81221286,81226983	0.714286
testis_male_adult_54_years	chr4	147838958	147838959	147838958	+	RAMPAGE_only	14	14	19	0.705508	3.431624	chr4	147838748	147839067	DNA|TcMar-Tc2|Kanga2_a	-	chr4	147860982	148072776	ARHGAP10|ENST00000506054.5	+	147860982,147875020,147879231,147881837,147906637,147909731,147913073,147939824,147946616,147955315,147965023,147966679,148023262,148046891,148063147,148064415,148071992	147866816,147875150,147879338,147881932,147906719,147909777,147913139,147939899,147946704,147955374,147965129,147966839,148023413,148047051,148063300,148064507,148072776	0.842105
testis_male_adult_54_years	chr19	9364920	9364921	9364920	+	RAMPAGE_only	5	5	7	0.259924	2.584963	chr19	9364147	9365239	LTR|ERV1|HERVH-int	-	chr19	9324694	9382617	ZNF559-ZNF177|NM_001202425.1	+	9324694,9364861,9371609,9376315,9378258,9378961,9379526,9380056,9380588	9324780,9364948,9371752,9376423,9378344,9379088,9379619,9380139,9382617	0.571429
testis_male_adult_54_years	chr6	133088119	133088126	133088125	+	High_confidence	320	321	633	23.504563	6.535627	chr6	133087965	133088545	LTR|ERVL-MaLR|MLT1E2	+	chr6	133088127	133106198	LINC00326|ENST00000434443.1	+	133088127,133096509,133100006,133106094	133088577,133096563,133100184,133106198	0.932070
testis_male_adult_54_years	chr11	47751513	47751522	47751513	-	RAMPAGE_only	2	2	6	0.222792	2.584963	chr11	47751373	47751591	DNA|hAT-Charlie|MER20	-	chr11	47731839	47754616	STRG.234722.3	-	47731839,47732536,47734024,47736615,47743952,47746055,47750915,47751142,47752915,47754527	47732219,47732670,47734129,47736740,47744163,47746394,47751036,47751290,47753102,47754616	0.666667
testis_male_adult_54_years	chr17	28401710	28401724	28401723	+	RAMPAGE_only	5	5	11	0.408452	3.121928	chr17	28401750	28401877	SINE|MIR|MIRb	+	chr17	28371661	28404049	SARM1|ENST00000585482.5	+	28371661,28381202,28384356,28384838,28385039,28388173,28388349,28395904,28396156	28372502,28381821,28384569,28384930,28385275,28388276,28388539,28396026,28404049	0.909091
testis_male_adult_54_years	chr9	132312182	132312183	132312182	-	High_confidence	7	7	7	0.259924	2.807355	chr9	132312016	132312201	DNA|hAT-Charlie|MER3	-	chr9	132261355	132311856	SETX|ENST00000436441.5	-	132261355,132269402,132269614,132271709,132275255,132277059,132278069,132281466,132283263,132286422,132288235,132288549,132295871,132296886,132298079,132300629,132311756	132264985,132269489,132269702,132271808,132275420,132277152,132278257,132281574,132283413,132286494,132288351,132288651,132296028,132297054,132298312,132300803,132311856	0.857143
testis_male_adult_54_years	chr19	35226812	35226813	35226812	+	High_confidence	7	7	10	0.371320	2.947703	chr19	35226811	35227209	LTR|ERVL-MaLR|MLT1C	+	chr19	35226821	35229530	STRG.335953.1	+	35226821,35227901,35228865	35227190,35228252,35229530	0.900000
testis_male_adult_54_years	chr8	18848438	18848449	18848448	-	RAMPAGE_only	5	5	11	0.408452	3.459432	chr8	18848357	18848497	SINE|5S-Deu-L2|AmnSINE1	+	chr8	18765448	18854374	PSD3|ENST00000519851.5	-	18765448,18799294,18801269,18804521,18804703,18854097	18765538,18799353,18801382,18804602,18804898,18854374	0.545455
testis_male_adult_54_years	chr3	195689355	195689361	195689360	+	High_confidence	4	4	8	0.297056	2.807355	chr3	195689376	195689522	LINE|L1|L1MC5a	+	chr3	195689350	195708807	MUC20-OT1|ENST00000625776.2	+	195689350,195696360,195699029,195701379,195708133,195708746	195689438,195696589,195699207,195701432,195708435,195708807	0.500000
testis_male_adult_54_years	chr20	8022665	8022666	8022665	+	RAMPAGE_only	7	7	9	0.334188	2.947703	chr20	8022403	8022906	LTR|ERVL-MaLR|MLT1F2	+	chr20	8019901	8027956	AL021396.1|ENST00000457707.1	+	8019901,8020390,8022058,8022380,8022556,8023270,8027660	8020104,8021261,8022155,8022449,8022767,8023452,8027956	0.888889
testis_male_adult_54_years	chr15	70297856	70297908	70297899	-	High_confidence	24	25	111	4.121653	5.452509	chr15	70297888	70298399	LINE|L1|HAL1ME	-	chr15	70296001	70298040	STRG.296589.1	-	70296001,70297797	70296323,70298040	0.864865
testis_male_adult_54_years	chr8	93698696	93698718	93698699	+	High_confidence	9	9	41	1.522412	4.977710	chr8	93698481	93698872	LTR|ERVL-MaLR|MLT1H2	+	chr8	93698588	93704984	STRG.189893.11	+	93698588,93699998,93701223,93703619,93704908	93698747,93700288,93701458,93703688,93704984	0.756098
testis_male_adult_54_years	chr5	4866689	4866714	4866689	-	High_confidence	5	5	19	0.705508	4.142664	chr5	4866518	4866646	LTR|ERVL-MaLR|MLT1A0	-	chr5	4853148	4866709	STRG.111762.4	-	4853148,4866015	4855812,4866709	0.631579
testis_male_adult_54_years	chr12	110161208	110161220	110161208	+	RAMPAGE_only	6	6	11	0.408452	3.321928	chr12	110161134	110161447	SINE|Alu|AluSx	-	chr12	110171894	110191061	IFT81|ENST00000551055.1	+	110171894,110180421,110190919	110172086,110180571,110191061	0.818182
testis_male_adult_54_years	chr4	44016680	44016700	44016699	-	High_confidence	4	4	11	0.408452	2.921928	chr4	44016424	44016724	LTR|ERV1|MER51A	-	chr4	44015677	44017130	STRG.93852.1	-	44015677	44017130	0.727273
testis_male_adult_54_years	chr20	10431880	10431933	10431880	-	High_confidence	11	11	42	1.559544	4.859829	chr20	10431809	10431944	LINE|L2|L2a	+	chr20	10405183	10431922	MKKS|ENST00000399054.6	-	10405183,10407615,10408627,10412529,10420527,10431683	10405687,10407726,10408803,10413931,10420758,10431922	0.809524
testis_male_adult_54_years	chr11	77748900	77748923	77748911	-	RAMPAGE_only	6	6	16	0.594112	3.875000	chr11	77748650	77749316	LINE|L1|L1MB7	+	chr11	77701118	77820711	RSF1|ENST00000528095.5	-	77701118,77725544,77740730,77747035,77764597,77820527	77702495,77725699,77740936,77747128,77764689,77820711	0.687500
testis_male_adult_54_years	chr8	140898321	140898342	140898321	-	RAMPAGE_only	3	3	10	0.371320	2.947703	chr8	140898046	140898347	DNA|hAT-Charlie|MER5C	-	chr8	140658388	140890768	PTK2|ENST00000519654.5	-	140658388,140664916,140668268,140674297,140675459,140686631,140700890,140706118,140717597,140735250,140739017,140743229,140744651,140746759,140752231,140761164,140764233,140789473,140793353,140800458,140803542,140818276,140818879,140830471,140846259,140846598,140864311,140879470,140890542	140659678,140664997,140668424,140674404,140675499,140686694,140701022,140706205,140717709,140735455,140739107,140743330,140744767,140746860,140752316,140761262,140764290,140789526,140793384,140800576,140803650,140818354,140819020,140830526,140846322,140846678,140864399,140879637,140890768	0.500000
testis_male_adult_54_years	chr12	123791011	123791020	123791015	-	High_confidence	5	5	16	0.594112	3.875000	chr12	123790842	123791165	SINE|Alu|AluJb	+	chr12	123789239	123791005	STRG.262874.1	-	123789239,123790048,123790779	123789868,123790172,123791005	0.500000
testis_male_adult_54_years	chr2	65728255	65728285	65728261	+	High_confidence	5	6	21	0.779772	4.106603	chr2	65728280	65728592	SINE|Alu|AluSz	+	chr2	65728096	65730789	STRG.39426.3	+	65728096,65730498	65728381,65730789	0.523810
testis_male_adult_54_years	chr22	27187488	27187504	27187503	+	High_confidence	6	6	12	0.445584	3.459432	chr22	27187326	27187519	SINE|MIR|MIRb	-	chr22	27187515	27189215	LOC105372977|NM_001318392.1	+	27187515,27188483,27188863	27187597,27188534,27189215	0.666667
testis_male_adult_54_years	chr1	180085574	180085604	180085603	+	High_confidence	76	78	210	7.797722	5.097891	chr1	180085591	180085806	LINE|CR1|L3	-	chr1	180085603	180111192	CEP350|ENST00000490141.5	+	180085603,180087164,180087577,180090713,180092613,180095522,180096037,180098862,180110996	180085928,180087288,180087717,180090796,180094616,180095930,180096184,180098985,180111192	0.990476
testis_male_adult_54_years	chr13	57216921	57216944	57216943	-	RAMPAGE_only	6	6	18	0.668376	3.947703	chr13	57216662	57216963	SINE|Alu|AluSc	+	chr13	57212115	57520234	STRG.269631.2	-	57212115,57216630,57519885	57213227,57216778,57520234	0.722222
testis_male_adult_54_years	chr4	168536617	168536618	168536617	-	RAMPAGE_only	8	9	10	0.371320	3.121928	chr4	168536432	168536812	LTR|ERVL-MaLR|THE1D	-	chr4	168476066	168537786	DDX60L|ENST00000505150.5	-	168476066,168490357,168492665,168530560,168537640	168476120,168490450,168492885,168530702,168537786	0.600000
testis_male_adult_54_years	chr1	29350122	29350143	29350142	-	High_confidence	8	8	23	0.854036	4.142915	chr1	29350054	29350332	LTR|ERVL-MaLR|MLT1L	-	chr1	29329619	29350114	LOC101928460|NR_110758.1	-	29329619,29333165,29349682	29331192,29333308,29350114	0.739130
testis_male_adult_54_years	chr5	102241989	102242005	102241989	-	High_confidence	3	3	10	0.371320	3.121928	chr5	102241828	102243508	LINE|L1|L1M1	+	chr5	102233986	102242102	STRG.123564.1	-	102233986,102239250,102240717,102241908	102237018,102239388,102240782,102242102	0.800000
testis_male_adult_54_years	chr5	143009380	143009394	143009380	+	RAMPAGE_only	21	22	43	1.596676	5.064869	chr5	143009357	143009571	SINE|MIR|MIR	+	chr5	143037195	143224150	ARHGAP26|ENST00000443674.5	+	143037195,143041815,143054438,143056027,143057641,143120987,143133966,143147230,143207197,143207443,143213996,143222357	143037261,143041890,143054526,143056086,143057747,143121147,143134105,143147381,143207308,143207473,143214088,143224150	0.651163
testis_male_adult_54_years	chr8	29148604	29148701	29148604	-	RAMPAGE_only	3	3	20	0.742640	4.121928	chr8	29148400	29148564	SINE|Alu|FAM	-	chr8	29067278	29263073	KIF13B|ENST00000524189.5	-	29067278,29071619,29075280,29092744,29099132,29108138,29109433,29109917,29113462,29116830,29118867,29122590,29123365,29124023,29126481,29127121,29130532,29132307,29134039,29140062,29140467,29142156,29146377,29147391,29148576,29150296,29155725,29160732,29165661,29167372,29176067,29177465,29180103,29181918,29186291,29188514,29190996,29196186,29245345,29262979	29070766,29072316,29075343,29092878,29099241,29108192,29109511,29110070,29113555,29117007,29118992,29122646,29123492,29124123,29126511,29127268,29130665,29132465,29134210,29140191,29140617,29142303,29146540,29147602,29148767,29150383,29155856,29160867,29165772,29167585,29176179,29177578,29180238,29182006,29186472,29188607,29191057,29196199,29245439,29263073	0.700000
testis_male_adult_54_years	chr6	15758201	15758205	15758203	-	High_confidence	35	88	93	3.453277	6.041762	chr6	15757782	15759321	LTR|ERV1|LTR12C	-	chr6	15749212	15758215	STRG.136858.2	-	15749212,15757634	15749999,15758215	0.849462
testis_male_adult_54_years	chr1	74634832	74634868	74634837	-	High_confidence	44	45	184	6.832290	6.754024	chr1	74634769	74634985	LTR?|LTR?|MamRep605	+	chr1	74589326	74634855	ERICH3|ENST00000420661.6	-	74589326,74599694,74606600,74612622,74620733,74631712,74634664	74590080,74599931,74606902,74612809,74620914,74631928,74634855	0.951087
testis_male_adult_54_years	chr11	123469325	123469342	123469325	+	High_confidence	3	3	7	0.259924	2.521641	chr11	123469120	123469512	LINE|L2|L2c	-	chr11	123469255	123600547	STRG.244082.6	+	123469255,123480815,123577366,123584311,123594081,123594734,123595941,123600467	123469478,123480893,123577577,123584332,123594166,123594838,123596037,123600547	0.857143
testis_male_adult_54_years	chr10	129380787	129380826	129380825	-	High_confidence	24	24	115	4.270181	6.152024	chr10	129380797	129381196	LTR|ERVL-MaLR|MLT1A1	+	chr10	129372193	129380753	AL359508.1|ENST00000647791.1	-	129372193,129378747,129380642	129373124,129378972,129380753	0.721739
testis_male_adult_54_years	chr3	99935706	99935707	99935706	-	RAMPAGE_only	11	11	14	0.519848	3.664498	chr3	99935648	99935715	LINE|CR1|L3	+	chr3	99833143	100114513	FILIP1L|NM_182909.3	-	99833143,99848294,99924229,99929855,99930768,100114052	99833261,99851070,99924408,99930029,99931030,100114513	0.714286
testis_male_adult_54_years	chr17	39868733	39868746	39868733	-	RAMPAGE_only	3	4	13	0.482716	3.584963	chr17	39868703	39868789	SINE|MIR|MIRb	-	chr17	39757714	39864188	IKZF3|NM_001284515.1	-	39757714,39777650,39777884,39788257,39792672,39829386,39832097,39864119	39766493,39777767,39778010,39788374,39792933,39829488,39832151,39864188	0.769231
testis_male_adult_54_years	chr5	100354896	100354930	100354924	-	High_confidence	5	5	16	0.594112	3.640224	chr5	100354438	100355430	LTR|ERV1|LTR12D	+	chr5	100214746	100355496	STRG.123126.2	-	100214746,100308871,100354406	100218146,100308934,100355496	0.875000
testis_male_adult_54_years	chr1	25853804	25853839	25853804	-	RAMPAGE_only	31	34	78	2.896297	5.643745	chr1	25853623	25853933	LTR|ERVL-MaLR|MLT1F1	-	chr1	25834005	25859412	AUNIP|ENST00000374298.3	-	25834005,25837412,25859279	25835846,25837554,25859412	0.717949
testis_male_adult_54_years	chr2	34991919	34991947	34991937	-	High_confidence	2	2	9	0.334188	2.750000	chr2	34991877	34992957	LTR|ERV1|LTR12D	+	chr2	34986929	34992308	STRG.33661.1	-	34986929,34990691,34991871	34987570,34990813,34992308	0.777778
testis_male_adult_54_years	chr6	2881285	2881286	2881285	-	High_confidence	84	86	86	3.193353	5.552683	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.976744
testis_male_adult_54_years	chr19	29440943	29440999	29440998	+	High_confidence	7	7	19	0.705508	3.947703	chr19	29439845	29441309	LTR|ERV1|LTR12C	+	chr19	29441020	29441522	STRG.333885.1	+	29441020	29441522	0.842105
testis_male_adult_54_years	chr17	36072835	36072867	36072866	+	High_confidence	38	38	87	3.230485	6.077428	chr17	36072803	36073389	LTR|ERVL|MLT2B1	+	chr17	36072865	36089857	AC243829.4|ENST00000620056.4	+	36072865,36074635,36075282,36089545	36072948,36074848,36075375,36089857	0.574713
testis_male_adult_54_years	chr2	218976617	218976618	218976617	+	High_confidence	8	9	9	0.334188	2.750000	chr2	218976511	218976730	SINE|MIR|MIRc	+	chr2	218976283	218977922	LINC00608|NR_024385.1	+	218976283,218977481	218977398,218977922	0.888889
testis_male_adult_54_years	chr20	35283880	35283890	35283880	-	High_confidence	2	2	7	0.259924	2.807355	chr20	35283843	35283974	SINE|MIR|MIRb	+	chr20	35278910	35284523	EIF6|ENST00000440766.5	-	35278910,35279565,35279941,35284380	35279206,35279747,35280118,35284523	0.714286
testis_male_adult_54_years	chr2	112750537	112750563	112750562	-	RAMPAGE_only	4	4	9	0.334188	2.750000	chr2	112750339	112750649	LTR|ERVL|LTR16C	+	chr2	112742430	112756074	CKAP2L|ENST00000474331.1	-	112742430,112746419,112752266,112755976	112742769,112746575,112752474,112756074	0.666667
testis_male_adult_54_years	chr2	107542702	107542748	107542747	+	High_confidence	17	19	61	2.265053	5.323859	chr2	107542342	107542809	LTR|ERVL|MER70A	-	chr2	107542748	107555639	LINC01886|ENST00000439893.1	+	107542748,107555132	107542821,107555639	0.934426
testis_male_adult_54_years	chr10	132328291	132328308	132328307	+	High_confidence	10	12	23	0.854036	3.880180	chr10	132328024	132328756	LTR|ERV1|LTR8	-	chr10	132328308	132329073	STRG.228204.1	+	132328308,132328731	132328342,132329073	0.652174
testis_male_adult_54_years	chr10	97634098	97634129	97634108	-	High_confidence	4	5	20	0.742640	3.984184	chr10	97634006	97634308	SINE|Alu|AluJo	+	chr10	97614552	97634156	MORN4|NM_001098831.1	-	97614552,97616677,97617207,97619586,97634004	97616411,97616787,97617322,97619683,97634156	0.700000
testis_male_adult_54_years	chr8	123810993	123810994	123810993	+	RAMPAGE_only	7	7	10	0.371320	3.321928	chr8	123810859	123811812	LINE|L2|L2a	-	chr8	123808928	123811455	FAM91A1|ENST00000520246.1	+	123808928,123810281	123809016,123811455	0.900000
testis_male_adult_54_years	chr3	47532970	47532979	47532978	+	High_confidence	3	3	7	0.259924	2.807355	chr3	47532872	47533119	LINE|L1|L1MC1	-	chr3	47532987	47538196	STRG.67293.1	+	47532987,47534003,47536867	47533055,47534122,47538196	0.857143
testis_male_adult_54_years	chr7	128641006	128641007	128641006	+	High_confidence	18	18	23	0.854036	4.349649	chr7	128640990	128641042	LTR|ERVL|LTR41	+	chr7	128641240	128660998	LINC01000|NR_024368.1	+	128641240,128642216,128648791,128651037,128651188	128641379,128642281,128648982,128651095,128660998	0.739130
testis_male_adult_54_years	chr9	6622941	6622962	6622941	-	High_confidence	3	3	9	0.334188	2.750000	chr9	6622239	6623631	Retroposon|SVA|SVA_D	+	chr9	6595027	6623002	STRG.196731.3	-	6595027,6602108,6604587,6605130,6606591,6610191,6620183,6622784	6595119,6602205,6604784,6605278,6606669,6610356,6620319,6623002	0.888889
testis_male_adult_54_years	chr7	3198289	3198301	3198300	-	High_confidence	3	3	8	0.297056	3.000000	chr7	3198204	3198321	LINE|L1|L1MDa	-	chr7	3196625	3198256	AC073316.2|ENST00000414126.1	-	3196625,3198012,3198194	3196930,3198063,3198256	0.875000
testis_male_adult_54_years	chr3	171710436	171710452	171710451	-	High_confidence	7	7	23	0.854036	3.936180	chr3	171710343	171710666	DNA|hAT-Charlie|MER1B	-	chr3	171642783	171711308	STRG.83312.4	-	171642783,171644909,171659212,171662059,171674499,171676714,171677565,171686684,171687370,171688675,171692331,171699744,171708754,171709559,171709940	171642889,171645023,171659301,171662170,171674613,171676833,171677694,171686798,171687584,171688876,171692442,171699826,171708838,171709709,171711308	0.956522
testis_male_adult_54_years	chr9	118809583	118809588	118809583	+	High_confidence	8	8	16	0.594112	4.000000	chr9	118808416	118809779	LTR|ERV1|LTR12C	-	chr9	118809149	118977840	STRG.209664.1	+	118809149,118852053,118902355,118906921,118907242,118951105,118976284,118977315	118809787,118852165,118902517,118907090,118907427,118951173,118976513,118977840	0.562500
testis_male_adult_54_years	chr3	101698262	101698270	101698262	+	RAMPAGE_only	3	3	7	0.259924	2.807355	chr3	101692861	101698340	LTR|ERVK|HERVK-int	+	chr3	101684813	101704914	STRG.73379.2	+	101684813,101685848,101692892	101685322,101687389,101704914	1.000000
testis_male_adult_54_years	chr14	44912447	44912492	44912452	-	High_confidence	3	3	26	0.965432	4.563856	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44897263	44912649	STRG.281295.5	-	44897263,44911756,44911977	44899313,44911860,44912649	0.538462
testis_male_adult_54_years	chr1	156343608	156343613	156343608	-	RAMPAGE_only	100	103	164	6.089650	5.529413	chr1	156343389	156343676	LTR|ERVL-MaLR|MLT1K	-	chr1	156308967	156338465	CCT3|ENST00000295688.7	-	156308967,156310557,156310949,156312040,156317165,156317414,156318867,156320838,156324971,156333546,156334712,156334867,156335826,156338153	156309303,156310689,156311195,156312221,156317247,156317547,156319017,156321025,156325089,156333643,156334775,156334918,156335888,156338465	0.920732
testis_male_adult_54_years	chr17	70128879	70128880	70128879	-	High_confidence	54	54	62	2.302185	5.139572	chr17	70128761	70129144	LTR|ERV1|MER48	-	chr17	70116519	70128989	STRG.321298.4	-	70116519,70128642	70128157,70128989	0.725806
testis_male_adult_54_years	chr11	18599574	18599606	18599605	-	High_confidence	16	20	51	1.893733	4.938803	chr11	18599501	18599670	SINE|MIR|MIRb	+	chr11	18590576	18599594	STRG.231249.3	-	18590576,18594440,18599430	18590841,18596295,18599594	0.882353
testis_male_adult_54_years	chr1	4412095	4412096	4412095	+	High_confidence	9	9	13	0.482716	3.584963	chr1	4411693	4412409	LTR|ERV1|MER50	-	chr1	4412123	4424687	LINC01777|ENST00000635312.1	+	4412123,4415552,4416311,4423053,4423347,4423993	4412349,4415587,4416548,4423187,4423448,4424687	0.692308
testis_male_adult_54_years	chr9	68975832	68975865	68975842	-	High_confidence	17	17	64	2.376449	5.085256	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.609375
testis_male_adult_54_years	chr11	10729302	10729338	10729337	-	RAMPAGE_only	5	8	28	1.039696	4.504706	chr11	10729274	10729483	LTR|ERVL|LTR67B	-	chr11	10573090	10693988	MRVI1|NM_001100163.2	-	10573090,10580454,10581866,10591547,10593491,10594145,10600917,10603119,10604404,10606741,10609727,10623777,10625965,10627715,10627972,10628750,10629537,10631990,10633967,10690264,10693535	10576575,10580589,10581986,10591612,10593599,10594195,10601059,10603251,10604545,10606772,10609851,10623856,10626583,10627760,10628025,10628828,10629711,10632061,10634071,10690369,10693988	0.607143
testis_male_adult_54_years	chr3	139190187	139190202	139190197	+	RAMPAGE_only	4	5	13	0.482716	3.584963	chr3	139190102	139190234	LTR|ERVL-MaLR|MLT1K	-	chr3	139344018	139357046	MRPS22|NM_020191.2	+	139344018,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344198,139347044,139348324,139350322,139351060,139352792,139355790,139357046	0.692308
testis_male_adult_54_years	chr18	48185324	48185325	48185324	-	RAMPAGE_only	9	9	10	0.371320	3.169925	chr18	48185133	48185455	LINE|L2|L2b	+	chr18	48026672	48165566	ZBTB7C|ENST00000588982.5	-	48026672,48039899,48162347,48165130	48029911,48041123,48162397,48165566	0.900000
testis_male_adult_54_years	chr1	104407963	104407967	104407963	-	High_confidence	30	31	66	2.450713	5.555536	chr1	104407427	104408642	LTR|ERV1|LTR12D	-	chr1	104407323	104407979	STRG.13830.1	-	104407323	104407979	0.969697
testis_male_adult_54_years	chr3	114624958	114625034	114624984	-	High_confidence	43	47	330	12.253564	6.685965	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.639394
testis_male_adult_54_years	chr20	16605422	16605428	16605422	-	High_confidence	29	29	46	1.708073	4.942275	chr20	16605342	16605890	LTR|ERVL-MaLR|MLT1G	+	chr20	16590137	16605446	STRG.342178.1	-	16590137,16604547	16590616,16605446	0.934783
testis_male_adult_54_years	chr4	128427977	128428041	128428000	+	High_confidence	24	25	102	3.787465	5.716064	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.715686
testis_male_adult_54_years	chr1	154208388	154208400	154208388	-	High_confidence	9	9	20	0.742640	3.721928	chr1	154208120	154208394	SINE|Alu|AluJo	+	chr1	154207229	154208517	C1orf43|ENST00000483282.1	-	154207229,154208480	154207648,154208517	0.950000
testis_male_adult_54_years	chr1	246176557	246176573	246176557	-	RAMPAGE_only	5	5	10	0.371320	3.321928	chr1	246176527	246176817	SINE|Alu|AluJb	-	chr1	245858561	246193727	SMYD3|ENST00000391836.3	-	245858561,245863798,245915529,245927930,245929869,246186742,246193674	245858670,245863886,245915640,245928033,245929937,246186942,246193727	0.500000
testis_male_adult_54_years	chr1	93324659	93324664	93324659	-	RAMPAGE_only	2	3	6	0.222792	2.584963	chr1	93324562	93324774	LINE|L2|L2a	+	chr1	93261478	93337469	STRG.12597.3	-	93261478,93305387,93309714,93311489,93324634,93325768,93326601	93264772,93305470,93309790,93311608,93324729,93325895,93337469	0.666667
testis_male_adult_54_years	chr12	122978391	122978413	122978391	+	High_confidence	18	18	35	1.299620	4.707715	chr12	122978297	122978409	SINE|MIR|MIR	-	chr12	122977424	122979265	OGFOD2|ENST00000536439.1	+	122977424,122978359,122978752,122979082	122978199,122978569,122979010,122979265	0.828571
testis_male_adult_54_years	chr10	48625115	48625129	48625128	-	High_confidence	5	6	9	0.334188	3.000000	chr10	48625042	48625196	SINE|MIR|MIRb	+	chr10	48624003	48625093	AC068898.2|ENST00000514425.1	-	48624003,48624925	48624432,48625093	0.555556
testis_male_adult_54_years	chr7	64999443	64999444	64999443	-	RAMPAGE_only	27	28	31	1.151092	4.349192	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64974451	65006653	STRG.165423.2	-	64974451,64981386,64981983,64989946,65006540	64979536,64981482,64982116,65006447,65006653	0.935484
testis_male_adult_54_years	chr21	17931180	17931208	17931180	-	High_confidence	10	10	32	1.188224	3.853236	chr21	17930795	17931185	LINE|L1|L1PB4	+	chr21	17930616	17931185	STRG.348648.1	-	17930616	17931185	0.843750
testis_male_adult_54_years	chr13	23248929	23248954	23248953	+	RAMPAGE_only	4	4	15	0.556980	3.106891	chr13	23248710	23249016	SINE|Alu|AluY	+	chr13	23180951	23325165	SGCG|ENST00000218867.3	+	23180951,23203694,23234610,23250629,23279358,23295414,23320636,23324367	23181075,23203889,23234712,23250717,23279478,23295487,23320760,23325165	0.933333
testis_male_adult_54_years	chr20	39660993	39661024	39661023	-	High_confidence	30	34	194	7.203610	6.832860	chr20	39660965	39661143	LTR|ERV1?|LTR103b_Mam	-	chr20	39655322	39661015	STRG.344043.1	-	39655322,39656189,39660462	39655451,39656634,39661015	0.896907
testis_male_adult_54_years	chr4	183017430	183017481	183017439	+	High_confidence	13	23	106	3.935993	6.235534	chr4	183017058	183019058	DNA|TcMar-Tigger|Tigger7	-	chr4	183017153	183036247	STRG.109857.1	+	183017153,183020375,183034996	183017637,183020448,183036247	0.641509
testis_male_adult_54_years	chr7	133370461	133370462	133370461	+	RAMPAGE_only	7	9	11	0.408452	3.121928	chr7	133370157	133370732	LTR|ERV1|MER4A1_	-	chr7	133253094	133481078	EXOC4|ENST00000462055.5	+	133253094,133274981,133288921,133305876,133317283,133356329,133374827,133475327,133480049	133253187,133275171,133289116,133306061,133317390,133356573,133375002,133475473,133481078	0.727273
testis_male_adult_54_years	chr16	35238139	35238187	35238139	-	High_confidence	5	6	28	1.039696	4.351823	chr16	35237781	35238215	LINE|L2|L2b	+	chr16	35237774	35238016	STRG.305718.1	-	35237774	35238016	0.500000
testis_male_adult_54_years	chr17	40472793	40472809	40472793	+	High_confidence	3	3	9	0.334188	3.000000	chr17	40472397	40472871	LTR|ERV1|MER66B	-	chr17	40472805	40473569	STRG.317337.1	+	40472805	40473569	0.777778
testis_male_adult_54_years	chr8	116648828	116648903	116648864	-	RAMPAGE_only	11	11	37	1.373884	4.550293	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.945946
testis_male_adult_54_years	chr5	41294877	41294916	41294886	-	High_confidence	155	167	470	17.452045	5.987819	chr5	41294486	41295148	LINE|L2|L2a	+	chr5	41293743	41294914	STRG.116693.1	-	41293743	41294914	0.819149
testis_male_adult_54_years	chr20	17122180	17122185	17122180	+	RAMPAGE_only	14	14	22	0.816904	3.538311	chr20	17121233	17122803	LINE|L1|L1MC3	-	chr20	17134876	17152524	STRG.342157.1	+	17134876,17152347	17135132,17152524	0.863636
testis_male_adult_54_years	chr6	144533090	144533113	144533112	+	RAMPAGE_only	7	7	14	0.519848	3.546594	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.928571
testis_male_adult_54_years	chr20	3208675	3208678	3208675	+	High_confidence	4	6	10	0.371320	2.947703	chr20	3208670	3208727	DNA|hAT-Charlie|MER5A	-	chr20	3208867	3223870	ITPA|ENST00000483354.5	+	3208867,3213168,3213984,3215280,3218516,3221840,3223365	3209033,3213226,3214058,3215312,3218632,3221917,3223870	0.500000
testis_male_adult_54_years	chr1	36082336	36082350	36082349	-	RAMPAGE_only	29	30	60	2.227921	5.496967	chr1	36082306	36082489	SINE|MIR|MIR	+	chr1	36080065	36084026	AL138787.1|ENST00000446354.2	-	36080065,36082225,36083975	36081511,36082402,36084026	0.766667
testis_male_adult_54_years	chr11	101080101	101080132	101080131	-	RAMPAGE_only	19	23	59	2.190789	4.890621	chr11	101079844	101081147	LINE|L1|L1PA16	+	chr11	101039060	101064025	PGR|ENST00000533207.5	-	101039060,101041944,101049928,101051423,101062446	101039271,101042102,101050059,101051568,101064025	0.711864
testis_male_adult_54_years	chr3	195894713	195894752	195894732	-	High_confidence	5	5	16	0.594112	3.640224	chr3	195894426	195894688	SINE|Alu|AluSx1	-	chr3	195884974	195894730	TNK2|ENST00000433111.1	-	195884974,195886976,195888425,195891911,195894315,195894605	195885033,195887047,195888606,195892007,195894363,195894730	0.750000
testis_male_adult_54_years	chr13	52661475	52661507	52661475	+	RAMPAGE_only	3	3	10	0.371320	3.121928	chr13	52661306	52661592	SINE|Alu|AluSz	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	1.000000
testis_male_adult_54_years	chr13	38471860	38471861	38471860	-	High_confidence	58	58	59	2.190789	4.659982	chr13	38471445	38472995	LTR|ERV1|LTR12C	-	chr13	38471531	38471848	STRG.266485.1	-	38471531	38471848	0.627119
testis_male_adult_54_years	chr7	25332970	25333024	25333023	+	High_confidence	17	17	50	1.856601	5.110902	chr7	25332849	25333072	SINE|MIR|MIRc	+	chr7	25333035	25333578	STRG.160404.1	+	25333035	25333578	0.620000
testis_male_adult_54_years	chr14	90535882	90535934	90535886	-	RAMPAGE_only	8	8	53	1.967997	5.487262	chr14	90535707	90536062	LTR|ERVL-MaLR|MLT1B	-	chr14	90524563	90816417	TTC7B|ENST00000328459.10	-	90524563,90578105,90593485,90610741,90617928,90644047,90646950,90652840,90654992,90657173,90658303,90676522,90680471,90689539,90695499,90730074,90744791,90780737,90786173,90816174	90541589,90578308,90593626,90610839,90618045,90644208,90647023,90652898,90655110,90657278,90658387,90676660,90680535,90689712,90695578,90730196,90744922,90780906,90786328,90816417	1.000000
testis_male_adult_54_years	chr3	51888694	51888721	51888720	+	High_confidence	3	3	12	0.445584	3.188722	chr3	51888610	51889009	LTR|ERVL-MaLR|MLT1J	+	chr3	51888686	51889113	STRG.67882.1	+	51888686	51889113	0.750000
testis_male_adult_54_years	chr2	208615269	208615316	208615299	+	RAMPAGE_only	2	2	11	0.408452	3.321928	chr2	208615119	208615478	LTR|ERVL-MaLR|THE1B	+	chr2	208542641	208825587	LOC101927960|NR_136588.1	+	208542641,208572012,208656825,208819551,208824194,208825398	208542991,208572167,208656989,208819655,208824350,208825587	0.636364
testis_male_adult_54_years	chr17	66043133	66043134	66043133	-	RAMPAGE_only	10	10	12	0.445584	3.251629	chr17	66043116	66043555	DNA|hAT-Charlie|Charlie4a	+	chr17	65635912	66191697	CEP112|ENST00000537949.5	-	65635912,65637123,65640963,65689128,65743067,65750661,65851803,65902151,65927581,65961462,66005689,66027500,66028312,66029122,66029868,66053735,66062962,66066777,66069914,66129745,66132669,66175043,66176829,66183193,66191658	65635974,65637188,65641065,65689218,65743217,65750724,65852034,65902334,65927689,65961598,66005769,66027560,66028405,66029252,66030023,66053879,66063081,66066877,66070001,66129823,66132763,66175216,66177020,66183307,66191697	1.000000
testis_male_adult_54_years	chr2	8895157	8895158	8895157	-	RAMPAGE_only	40	40	46	1.708073	5.072369	chr2	8894646	8895631	LTR|ERV1|LTR12D	-	chr2	8894259	8958642	STRG.30337.5	-	8894259,8908620,8943186,8958496	8895815,8908716,8943264,8958642	0.956522
testis_male_adult_54_years	chr1	235593940	235593973	235593940	-	High_confidence	17	33	62	2.302185	4.659982	chr1	235593518	235594948	LTR|ERV1|LTR12C	-	chr1	235550831	235593955	STRG.27392.4	-	235550831,235583739,235593667	235552237,235583848,235593955	0.629032
testis_male_adult_54_years	chrY	21138615	21138633	21138632	+	High_confidence	7	7	22	0.816904	3.558519	chrY	21138292	21138825	LTR|ERV1|MER61F	+	chrY	21138586	21139955	STRG.372603.1	+	21138586	21139955	0.727273
testis_male_adult_54_years	chr12	643627	643636	643635	-	High_confidence	3	3	12	0.445584	3.459432	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	565359	643636	NINJ2|ENST00000433832.2	-	565359,643510	566178,643636	0.500000
testis_male_adult_54_years	chr6	146788395	146788396	146788395	+	RAMPAGE_only	9	9	14	0.519848	3.664498	chr6	146788237	146788400	DNA|TcMar-Tigger|Tigger9a	+	chr6	146770438	146801254	ADGB|ENST00000326916.12	+	146770438,146782019,146784617,146785609,146788388,146801182	146770609,146782192,146784794,146785712,146788610,146801254	0.928571
testis_male_adult_54_years	chr12	10710653	10710654	10710653	-	High_confidence	8	8	8	0.297056	3.000000	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10702009	10710686	YBX3|ENST00000544504.5	-	10702009,10704050,10709907,10710533	10702134,10704148,10710114,10710686	0.875000
testis_male_adult_54_years	chr2	12926816	12926871	12926860	-	High_confidence	12	13	90	3.341881	4.273770	chr2	12926604	12927072	LTR|ERV1|LTR12C	-	chr2	12915733	12926980	STRG.30852.1	-	12915733,12926600	12915927,12926980	0.811111
testis_male_adult_54_years	chr2	98608208	98608236	98608208	-	High_confidence	4	4	10	0.371320	2.646439	chr2	98608072	98608174	SINE|MIR|MIRb	-	chr2	98599309	98608492	COA5|ENST00000328709.7	-	98599309,98604107,98608306	98600793,98604191,98608492	0.700000
testis_male_adult_54_years	chr1	54641944	54641967	54641966	+	High_confidence	4	4	8	0.297056	2.750000	chr1	54641894	54641996	DNA|hAT-Tip100|MamTip2	+	chr1	54641821	54700223	MROH7|ENST00000395690.6	+	54641821,54651948,54652852,54665166,54668853,54670496,54670799,54673090,54673700,54674015,54678741,54679262,54679890,54682655,54686257,54692423,54695375,54697652,54700068	54641968,54651983,54654157,54665240,54668937,54670576,54670929,54673186,54673805,54674151,54678854,54679439,54680045,54682794,54686448,54692561,54695490,54697690,54700223	1.000000
testis_male_adult_54_years	chr10	17431996	17432035	17432021	+	High_confidence	4	4	27	1.002564	4.392747	chr10	17431756	17432391	LINE|L2|L2a	-	chr10	17431814	17433128	STRG.214246.1	+	17431814	17433128	0.962963
testis_male_adult_54_years	chr11	102583605	102583636	102583605	-	High_confidence	34	35	80	2.970561	4.979158	chr11	102583338	102583683	DNA|TcMar-Tigger|Tigger3a	+	chr11	102577143	102583607	MMP20|ENST00000542305.1	-	102577143,102579038,102583462	102577426,102579142,102583607	0.825000
testis_male_adult_54_years	chr18	36972585	36972595	36972585	+	RAMPAGE_only	6	6	14	0.519848	3.664498	chr18	36972479	36972913	LTR|ERVL|MER70C	-	chr18	36965552	36976487	STRG.326317.13	+	36965552	36976487	0.642857
testis_male_adult_54_years	chr17	5077929	5077948	5077929	+	High_confidence	4	4	11	0.408452	3.277613	chr17	5077791	5077977	LINE|L2|L2b	+	chr17	5078247	5096374	ZFP3|ENST00000318833.3	+	5078247,5091496	5078575,5096374	0.636364
testis_male_adult_54_years	chr6	40523924	40523963	40523930	-	High_confidence	31	31	102	3.787465	5.784695	chr6	40523855	40523948	SINE|MIR|MIRc	-	chr6	40516335	40523933	AL033380.1|ENST00000442781.1	-	40516335,40517303,40523831	40516444,40517513,40523933	0.803922
testis_male_adult_54_years	chr1	144826409	144826531	144826514	+	RAMPAGE_only	12	19	80	2.970561	5.271809	chr1	144826137	144827246	LINE|L1|L1MEd	+	chr1	144823707	144827789	STRG.15911.1	+	144823707	144827789	0.912500
testis_male_adult_54_years	chr3	125123615	125123618	125123617	-	High_confidence	14	34	43	1.596676	4.814511	chr3	125123512	125123811	LTR|ERVL-MaLR|THE1B	-	chr3	125083142	125123599	SLC12A8|ENST00000465475.5	-	125083142,125107480,125110188,125118768,125120598,125123529	125084052,125108126,125110335,125118856,125120686,125123599	0.697674
testis_male_adult_54_years	chr1	83734802	83734808	83734807	-	RAMPAGE_only	3	3	7	0.259924	2.584963	chr1	83734432	83734830	LTR|ERVL-MaLR|MSTA	+	chr1	83732544	83751519	STRG.11102.8	-	83732544,83750197	83735887,83751519	0.857143
testis_male_adult_54_years	chr10	16762141	16762160	16762141	-	RAMPAGE_only	2	2	6	0.222792	2.584963	chr10	16762078	16762200	LINE|L2|L2b	+	chr10	16590610	16817383	RSU1|ENST00000377921.7	-	16590610,16695022,16752538,16752917,16754870,16764389,16782033,16816972	16593496,16695155,16752653,16753000,16754989,16764510,16782084,16817383	0.666667
testis_male_adult_54_years	chr3	19234555	19234613	19234555	+	RAMPAGE_only	7	7	43	1.596676	5.021928	chr3	19233730	19234805	LTR|ERV1|LTR12D	-	chr3	19148533	19534739	KCNH8|ENST00000452398.5	+	19148533,19253653,19281197,19342586,19346651,19347724,19390480,19395103,19438163,19450105,19456767,19510362,19512969,19515321,19517997,19533394	19148795,19253887,19281329,19342714,19346734,19347965,19390638,19395311,19438361,19451404,19456982,19510401,19513325,19515428,19518074,19534739	0.604651
testis_male_adult_54_years	chr19	31588199	31588217	31588199	+	High_confidence	4	4	10	0.371320	3.321928	chr19	31588069	31588503	LTR|ERV1|MER50	-	chr19	31588191	31589764	STRG.334753.1	+	31588191	31589764	0.500000
testis_male_adult_54_years	chr2	239008873	239008926	239008925	+	High_confidence	12	12	64	2.376449	4.376200	chr2	239008874	239009096	LINE|L1|L1MEj	-	chr2	239009047	239010104	STRG.60042.1	+	239009047	239010104	0.984375
testis_male_adult_54_years	chr1	12096208	12096248	12096208	+	High_confidence	2	2	13	0.482716	3.546594	chr1	12095749	12096245	LTR|ERVL-MaLR|MLT1K	-	chr1	12096201	12144205	STRG.840.3	+	12096201,12097100,12104378,12109565,12110040,12111897,12115576,12123283,12123714,12125950,12126182,12135587,12138228,12142286	12096244,12097217,12104531,12109656,12110204,12112014,12115729,12123377,12123827,12126052,12126236,12135613,12138436,12144205	0.538462
testis_male_adult_54_years	chr10	93970605	93970625	93970605	+	High_confidence	2	2	9	0.334188	2.947703	chr10	93970005	93971627	Retroposon|SVA|SVA_D	+	chr10	93970349	93970968	STRG.223532.1	+	93970349	93970968	0.777778
testis_male_adult_54_years	chr9	70805449	70805450	70805449	-	RAMPAGE_only	4	4	6	0.222792	2.584963	chr9	70805313	70805562	SINE|Alu|AluY	+	chr9	70535952	70862910	TRPM3|ENST00000358082.7	-	70535952,70549541,70552843,70553159,70591030,70598418,70603341,70610608,70615907,70618866,70620075,70625190,70635210,70639059,70640559,70681505,70761600,70784104,70811169,70827846,70843002,70846377,70862907	70537405,70549674,70553043,70553310,70591205,70598670,70603470,70610749,70616075,70619095,70620365,70625331,70635261,70639194,70640660,70681578,70761724,70784279,70811244,70828018,70843127,70846591,70862910	0.666667
testis_male_adult_54_years	chr1	89127431	89127432	89127431	-	High_confidence	143	143	148	5.495538	5.515486	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89110186	89127414	STRG.12027.3	-	89110186,89112471,89114015,89116991,89117576,89120178,89121142,89121776,89125862,89126801	89110266,89112684,89114296,89117234,89117773,89120288,89121270,89121983,89126062,89127414	0.939189
testis_male_adult_54_years	chr1	153637550	153637551	153637550	+	High_confidence	18	18	22	0.816904	4.321928	chr1	153637372	153637665	SINE|Alu|AluSg	+	chr1	153638083	153645470	CHTOP|ENST00000368687.1	+	153638083,153642245,153643226,153645063	153638448,153642429,153643364,153645470	0.772727
testis_male_adult_54_years	chr2	78542128	78542159	78542151	+	RAMPAGE_only	18	18	66	2.450713	4.725098	chr2	78541256	78543178	LINE|L1|L1PBa1	+	chr2	78545530	78566088	LOC105374820|NR_136312.1	+	78545530,78552619,78561855,78565871	78545597,78552700,78561945,78566088	0.893939
testis_male_adult_54_years	chr13	22899964	22899965	22899964	-	High_confidence	282	283	292	10.842547	5.055433	chr13	22899526	22900969	LTR|ERV1|LTR12C	-	chr13	22899391	22900044	STRG.264966.1	-	22899391	22900044	0.945205
testis_male_adult_54_years	chr21	46142408	46142421	46142420	-	High_confidence	6	6	26	0.965432	4.323856	chr21	46142201	46143045	LTR|ERV1|LTR12	-	chr21	46136261	46142669	STRG.353113.8	-	46136261,46137238,46138879,46140229,46140570	46137073,46138646,46140179,46140520,46142669	0.961538
testis_male_adult_54_years	chr12	8788252	8788253	8788252	+	High_confidence	44	44	57	2.116525	5.047459	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.859649
testis_male_adult_54_years	chr10	29367260	29367261	29367260	+	High_confidence	344	345	392	14.555748	5.150090	chr10	29366011	29367676	LTR|ERV1|LTR12C	+	chr10	29367274	29369239	STRG.216286.1	+	29367274,29368239	29367700,29369239	0.946429
testis_male_adult_54_years	chr17	70835249	70835273	70835265	-	High_confidence	13	15	44	1.633808	4.582901	chr17	70835242	70835298	SINE|MIR|MIR3	-	chr17	70834601	70835203	STRG.321403.1	-	70834601	70835203	0.681818
testis_male_adult_54_years	chr5	76084220	76084244	76084238	+	High_confidence	3	3	10	0.371320	3.121928	chr5	76084199	76084242	LINE|L2|L2a	-	chr5	76083413	76353939	SV2C|ENST00000322285.7	+	76083413,76131649,76194918,76209735,76285161,76285780,76291220,76291767,76295777,76298793,76300728,76301385,76353129	76083512,76132330,76195099,76209887,76285295,76285870,76291331,76291856,76295942,76298927,76300932,76301545,76353939	1.000000
testis_male_adult_54_years	chr10	119952049	119952079	119952071	+	High_confidence	12	12	54	2.005129	5.407575	chr10	119951304	119952403	LINE|L1|L1MEg	+	chr10	119951833	119952454	STRG.226977.1	+	119951833	119952454	0.592593
testis_male_adult_54_years	chr5	100354804	100354848	100354826	-	High_confidence	4	6	20	0.742640	4.221928	chr5	100354438	100355430	LTR|ERV1|LTR12D	+	chr5	100246806	100355496	STRG.123126.1	-	100246806,100248206,100308871,100354406	100247759,100248337,100308934,100355496	0.750000
testis_male_adult_54_years	chr16	78241672	78241699	78241690	-	High_confidence	68	132	301	11.176735	6.139412	chr16	78241416	78241735	SINE|Alu|AluSz	-	chr16	78234718	78241741	STRG.310271.1	-	78234718,78237631,78238087,78241197	78234997,78237682,78238188,78241741	0.970100
testis_male_adult_54_years	chr12	116225001	116225002	116225001	-	RAMPAGE_only	5	5	8	0.297056	2.807355	chr12	116224680	116224992	SINE|Alu|AluJb	-	chr12	116183770	116277670	STRG.261883.13	-	116183770,116232058,116236820,116237467,116277059	116230622,116232156,116236890,116237705,116277670	0.625000
testis_male_adult_54_years	chr6	43025277	43025312	43025311	+	High_confidence	3	3	14	0.519848	3.546594	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.714286
testis_male_adult_54_years	chr15	75879157	75879162	75879161	+	RAMPAGE_only	5	6	10	0.371320	3.169925	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75868950	75899577	UBE2Q2|ENST00000567921.1	+	75868950,75873427,75883365,75896994,75899426	75869010,75873568,75883424,75897061,75899577	0.700000
testis_male_adult_54_years	chr14	93918925	93918960	93918934	+	High_confidence	6	6	23	0.854036	4.297079	chr14	93918771	93918941	DNA|hAT-Charlie|MER117	-	chr14	93918911	93929608	FAM181A|ENST00000267594.5	+	93918911,93925047,93928198	93918994,93925370,93929608	0.739130
testis_male_adult_54_years	chr16	63730222	63730237	63730236	+	High_confidence	62	64	92	3.416145	6.107701	chr16	63729845	63730540	DNA|TcMar-Tigger|MER44D	-	chr16	63730239	63731600	STRG.307825.1	+	63730239,63730475,63731409	63730312,63730650,63731600	0.619565
testis_male_adult_54_years	chr11	13419689	13419730	13419689	-	RAMPAGE_only	7	7	25	0.928300	4.262692	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.880000
testis_male_adult_54_years	chr18	79087263	79087292	79087291	+	High_confidence	3	4	15	0.556980	2.556657	chr18	79086962	79087349	LTR|ERVL-MaLR|MSTD	-	chr18	79087306	79277268	ATP9B|ENST00000590271.5	+	79087306,79096475,79110354,79113240,79126266,79143801,79154503,79193182,79194385,79206936,79209547,79213961,79253380,79277053	79087678,79096649,79110505,79113354,79126375,79143860,79154555,79193263,79194492,79207012,79209722,79214038,79253541,79277268	0.866667
testis_male_adult_54_years	chr1	39514078	39514109	39514093	+	RAMPAGE_only	3	3	18	0.668376	3.690117	chr1	39513319	39514368	LINE|L2|L2	-	chr1	39491645	39525935	BMP8A|ENST00000331593.5	+	39491645,39511173,39511755,39521375,39522402,39523006,39525648	39492325,39511363,39511904,39521570,39522482,39523117,39525935	0.944444
testis_male_adult_54_years	chr4	76234526	76234540	76234535	-	High_confidence	3	3	9	0.334188	3.169925	chr4	76234334	76234657	LTR|ERV1|MER61A	-	chr4	76158759	76234536	SCARB2|ENST00000638295.1	-	76158759,76163224,76166249,76168402,76169866,76174143,76175790,76176436,76179516,76180953,76195706,76234302	76161751,76163383,76166301,76168476,76169985,76174313,76175910,76176528,76179705,76181101,76195864,76234536	0.555556
testis_male_adult_54_years	chr1	101871984	101872025	101872024	+	High_confidence	19	19	142	5.272746	6.076519	chr1	101871919	101872196	LINE|L2|L2c	-	chr1	101872011	101894743	DNAJA1P5|NR_033424.2	+	101872011,101893056	101872105,101894743	0.823944
testis_male_adult_54_years	chr11	21752675	21752705	21752704	+	High_confidence	4	4	8	0.297056	2.807355	chr11	21752440	21753682	LTR|ERV1|LTR12C	-	chr11	21752979	21796526	STRG.231568.1	+	21752979,21794776	21753726,21796526	0.500000
testis_male_adult_54_years	chr10	43628807	43628817	43628807	+	RAMPAGE_only	77	123	193	7.166478	6.239852	chr10	43628446	43629216	LTR|ERVL|LTR101_Mam	+	chr10	43645941	43648019	ZNF32-AS2|ENST00000418966.1	+	43645941,43647111,43647568	43646297,43647209,43648019	0.580311
testis_male_adult_54_years	chr2	150541709	150541714	150541713	-	High_confidence	44	45	74	2.747769	4.922178	chr2	150541288	150543121	LTR|ERV1|LTR12C	-	chr2	150468194	150541703	STRG.48342.1	-	150468194,150471626,150474874,150486693,150487267,150490833,150507798,150541324	150470238,150471761,150474984,150486781,150487455,150490918,150507895,150541703	0.905405
testis_male_adult_54_years	chr12	108515986	108516005	108515993	-	High_confidence	2	2	8	0.297056	2.521641	chr12	108515849	108516081	SINE|MIR|MIR	+	chr12	108491876	108515988	STRG.261081.4	-	108491876,108492449,108500406,108515898	108491922,108492583,108500667,108515988	0.500000
testis_male_adult_54_years	chr1	51366183	51366212	51366183	-	RAMPAGE_only	4	4	16	0.594112	3.506891	chr1	51366072	51366367	SINE|Alu|AluJb	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.625000
testis_male_adult_54_years	chr8	111691915	111691951	111691950	+	RAMPAGE_only	5	5	13	0.482716	3.188722	chr8	111691272	111695220	LINE|L1|L1PA15	-	chr8	111699980	111700229	STRG.192507.1	+	111699980	111700229	0.538462
testis_male_adult_54_years	chr22	42644615	42644664	42644615	-	High_confidence	15	16	65	2.413581	4.397729	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	0.984615
testis_male_adult_54_years	chrX	12798947	12798971	12798970	+	High_confidence	7	8	16	0.594112	3.640224	chrX	12798627	12799158	LTR|ERVL|MER68	+	chrX	12799354	12823165	PRPS2|ENST00000461630.1	+	12799354,12809233,12810021,12820643,12822703	12799399,12809332,12810146,12820803,12823165	0.750000
testis_male_adult_54_years	chr7	102943913	102943942	102943913	-	RAMPAGE_only	4	4	12	0.445584	3.251629	chr7	102943470	102944146	LTR|ERV1|MER67C	-	chr7	102883571	102973219	FBXL13|ENST00000477915.5	-	102883571,102884213,102913085,102926273,102963532,102968021,102973149	102883685,102884312,102913215,102926374,102963665,102968117,102973219	0.833333
testis_male_adult_54_years	chr8	85255949	85255959	85255949	+	RAMPAGE_only	6	7	12	0.445584	3.084963	chr8	85255758	85256028	LINE|L2|L2c	+	chr8	85245526	85284073	CA13|ENST00000321764.3	+	85245526,85250739,85259420,85266607,85267901,85268471,85281229	85245865,85250937,85259539,85266703,85267964,85268627,85284073	0.750000
testis_male_adult_54_years	chr16	47928158	47928159	47928158	-	High_confidence	28	28	30	1.113960	4.494680	chr16	47927635	47928375	LTR|ERV1|LTR12_	-	chr16	47927737	47928142	STRG.305968.1	-	47927737	47928142	0.633333
testis_male_adult_54_years	chr6	8102004	8102016	8102004	-	High_confidence	11	12	37	1.373884	4.336592	chr6	8101821	8102031	LINE|L2|L2b	+	chr6	8097306	8102046	EEF1E1|ENST00000488226.2	-	8097306,8101764	8097467,8102046	0.675676
testis_male_adult_54_years	chr13	52323831	52323876	52323831	-	RAMPAGE_only	23	23	157	5.829726	5.906520	chr13	52323775	52323855	SINE|tRNA|LFSINE_Vert	+	chr13	52219527	52334277	STRG.269392.1	-	52219527,52223238,52227004,52229325,52233063,52235219,52253744,52253936,52258528,52279840,52280651,52280861,52283237,52289821,52291506,52297765,52308245,52309195,52312649,52313931,52316345,52320549,52323279,52323829,52324065,52325539,52333054,52333926	52219630,52223331,52227096,52229431,52233144,52235281,52253833,52254018,52258590,52279905,52280715,52280961,52283357,52289983,52291557,52297828,52308299,52309249,52312703,52313959,52316399,52320606,52323388,52323914,52324167,52325685,52333161,52334277	0.821656
testis_male_adult_54_years	chr13	36789320	36789330	36789329	+	High_confidence	42	44	146	5.421274	5.465503	chr13	36789010	36789381	LTR|ERVL-MaLR|MSTD	-	chr13	36789316	36790584	STRG.266317.2	+	36789316,36790362	36789553,36790584	0.575342
testis_male_adult_54_years	chr4	119440692	119440720	119440692	-	RAMPAGE_only	2	2	7	0.259924	2.521641	chr4	119440655	119440958	SINE|Alu|AluSq2	+	chr4	119407966	119454628	STRG.101426.1	-	119407966,119410231,119412351,119413288,119419041,119419958,119420493,119422450,119429419,119431836,119434739,119440559,119442157,119444367,119445311,119448827,119450040,119454245,119454345	119410138,119410289,119412542,119413407,119419106,119420155,119420590,119422574,119429609,119431901,119434975,119441054,119442217,119444433,119445527,119448959,119450175,119454322,119454628	1.000000
testis_male_adult_54_years	chrX	17741235	17741252	17741251	+	RAMPAGE_only	2	3	6	0.222792	2.584963	chrX	17741088	17741396	DNA|hAT-Charlie|MER1B	-	chrX	17737724	17750114	STRG.359552.9	+	17737724,17738281,17746017,17749399,17749893	17738237,17744219,17746098,17749504,17750114	1.000000
testis_male_adult_54_years	chr22	25015773	25015802	25015773	+	RAMPAGE_only	2	2	8	0.297056	2.807355	chr22	25015746	25015819	DNA|TcMar-Tigger|Tigger19b	+	chr22	24952729	25194457	KIAA1671|ENST00000406486.8	+	24952729,25014429,25025632,25027944,25032608,25038759,25049229,25170819,25174239,25177347,25181698,25184976,25190701,25192405	24952772,25014566,25025784,25029540,25032696,25041525,25049364,25170938,25174489,25177522,25181823,25185119,25190784,25194457	0.750000
testis_male_adult_54_years	chr3	28199845	28199846	28199845	-	High_confidence	33	33	35	1.299620	4.415458	chr3	28199437	28200978	LTR|ERV1|LTR12C	-	chr3	28169077	28199858	STRG.65185.1	-	28169077,28199426	28169537,28199858	0.885714
testis_male_adult_54_years	chr1	181046655	181046656	181046655	+	High_confidence	137	137	139	5.161350	5.244110	chr1	181045651	181047071	LTR|ERV1|LTR12C	+	chr1	181046612	181047121	STRG.20295.1	+	181046612	181047121	0.964029
testis_male_adult_54_years	chr20	53608832	53608876	53608832	-	High_confidence	56	60	123	4.567237	5.887636	chr20	53608733	53608922	SINE|MIR|MIR	+	chr20	53582541	53608892	ZNF217|ENST00000431687.5	-	53582541,53608353,53608831	53583168,53608444,53608892	0.715447
testis_male_adult_54_years	chr19	39459894	39459951	39459904	+	RAMPAGE_only	8	9	38	1.411016	4.701746	chr19	39459842	39459908	LTR|ERV1|LTR78B	-	chr19	39457700	39466720	SUPT5H|ENST00000593727.1	+	39457700,39458293,39458817,39459004,39459183,39459558,39459891,39466479,39466674	39457740,39458305,39458887,39459073,39459249,39459589,39459960,39466569,39466720	0.578947
testis_male_adult_54_years	chr10	123887190	123887213	123887212	-	RAMPAGE_only	5	5	20	0.742640	3.826875	chr10	123887082	123887290	LINE|CR1|L3	+	chr10	123745635	123891814	CPXM2|ENST00000241305.3	-	123745635,123754662,123757212,123761871,123766972,123768525,123770915,123780166,123797975,123799114,123842348,123862613,123880210,123891355	123747017,123754762,123757352,123762169,123767152,123768722,123771039,123780255,123798126,123799199,123842488,123862723,123880309,123891814	0.700000
testis_male_adult_54_years	chr1	108875345	108875359	108875345	+	High_confidence	7	9	17	0.631244	3.690117	chr1	108875209	108875440	SINE|MIR|MIRb	-	chr1	108875349	108934545	GPSM2|ENST00000406462.6	+	108875349,108876736,108885274,108896863,108897491,108897958,108898641,108898878,108901789,108903125,108904124,108914337,108918612,108922416,108923999,108929700	108875382,108877228,108885578,108897085,108897627,108898101,108898765,108898994,108901945,108903234,108904254,108914408,108918789,108922576,108924214,108934545	0.941176
testis_male_adult_54_years	chr7	23905032	23905033	23905032	+	High_confidence	5	7	7	0.259924	2.807355	chr7	23904751	23905276	LTR|ERV1|LTR12C	-	chr7	23905065	23930699	STRG.160847.1	+	23905065,23930629	23905321,23930699	0.571429
testis_male_adult_54_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	30	30	34	1.262488	4.741364	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.617647
testis_male_adult_54_years	chr15	42273856	42273902	42273856	+	High_confidence	5	6	15	0.556980	3.521641	chr15	42273826	42273946	LINE|CR1|L3	+	chr15	42273657	42314833	GANC|ENST00000566442.5	+	42273657,42274167,42276347,42278481,42287690,42292734,42297610,42306545,42308221,42310282,42310692,42314079	42274044,42274510,42276410,42278590,42287818,42292917,42297656,42306612,42308318,42310463,42310846,42314833	0.933333
testis_male_adult_54_years	chr11	63616887	63616899	63616898	-	High_confidence	14	14	23	0.854036	4.349649	chr11	63616701	63616995	SINE|Alu|AluYe5	+	chr11	63574849	63616883	STRG.235607.2	-	63574849,63590099,63598060,63613999,63616586	63575046,63590368,63598163,63614068,63616883	0.695652
testis_male_adult_54_years	chr3	19703408	19703460	19703456	+	High_confidence	19	19	55	2.042261	4.393383	chr3	19702399	19703772	LTR|ERV1|LTR12C	+	chr3	19703422	19724019	STRG.63797.1	+	19703422,19722912	19703776,19724019	0.890909
testis_male_adult_54_years	chr8	79991937	79991964	79991947	+	High_confidence	11	15	50	1.856601	3.494573	chr8	79991960	79992307	LTR|ERVL-MaLR|MLT1F1	+	chr8	79992177	79992912	STRG.187378.1	+	79992177	79992912	0.860000
testis_male_adult_54_years	chr3	195688658	195688701	195688658	+	High_confidence	2	2	12	0.445584	3.584963	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688681	195708807	MUC20-OT1|ENST00000627562.2	+	195688681,195689338,195699029,195701379,195708133	195688797,195689438,195699207,195701495,195708807	0.666667
testis_male_adult_54_years	chr6	3720076	3720077	3720076	-	High_confidence	656	660	819	30.411117	5.945887	chr6	3719558	3721329	LTR|ERV1|LTR12C	-	chr6	3663386	3720086	STRG.134860.1	-	3663386,3719362	3663905,3720086	0.942613
testis_male_adult_54_years	chr11	129814689	129814690	129814689	-	High_confidence	528	530	625	23.207507	6.466192	chr11	129814072	129815141	LTR|ERV1|LTR12D	-	chr11	129761584	129814734	STRG.245014.1	-	129761584,129783005,129813967	129767439,129783180,129814734	0.955200
testis_male_adult_54_years	chr12	130649496	130649505	130649496	+	High_confidence	5	5	17	0.631244	3.577820	chr12	130649455	130649513	LTR|ERVL-MaLR|MLT1J	-	chr12	130649346	130650518	STRG.263740.1	+	130649346	130650518	0.882353
testis_male_adult_54_years	chr1	30411150	30411151	30411150	-	High_confidence	7	7	8	0.297056	2.521641	chr1	30411058	30411421	LTR|ERVL-MaLR|MSTD	-	chr1	30409559	30411638	AL161638.2|ENST00000427319.1	-	30409559,30410923,30411452	30409724,30411079,30411638	0.500000
testis_male_adult_54_years	chr8	2726948	2726963	2726962	+	High_confidence	13	13	35	1.299620	4.801970	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727215	2729202	STRG.178769.1	+	2727215	2729202	0.514286
testis_male_adult_54_years	chr9	131454963	131454998	131454997	+	RAMPAGE_only	2	2	6	0.222792	2.584963	chr9	131454923	131455021	SINE|Alu|AluSx3	-	chr9	131446504	131500171	STRG.211436.5	+	131446504,131447084,131447661,131455075,131459163,131464762,131467562,131470787,131473507,131474453,131477743,131481725,131482373,131482709,131483358,131484685,131484947,131486084,131486480,131487166,131487855,131491421,131492168,131494404,131495739	131446642,131447206,131447804,131455166,131459356,131465078,131467753,131470983,131473724,131476535,131479393,131481808,131482562,131482907,131483445,131484790,131485140,131486182,131486541,131487294,131488096,131491580,131492260,131494486,131500171	0.666667
testis_male_adult_54_years	chr2	196068421	196068461	196068421	-	High_confidence	3	3	16	0.594112	3.625000	chr2	196068200	196068411	SINE|MIR|MIRc	-	chr2	196028007	196068487	DNAH7|ENST00000427816.1	-	196028007,196047351,196048295,196051186,196058053,196068351	196028047,196047499,196048404,196051249,196058116,196068487	0.812500
testis_male_adult_54_years	chrX	46244219	46244235	46244219	-	High_confidence	4	4	18	0.668376	3.905765	chrX	46243803	46244482	LTR|ERV1|LTR12_	-	chrX	46243773	46244208	STRG.362419.1	-	46243773	46244208	0.555556
testis_male_adult_54_years	chr8	80086528	80086532	80086528	+	High_confidence	5	5	11	0.408452	3.027169	chr8	80086443	80086591	LINE|L1|L1MC4	+	chr8	80086538	80088161	STRG.187395.1	+	80086538,80087348,80088028	80086692,80087434,80088161	0.636364
testis_male_adult_54_years	chr1	191151486	191151487	191151486	-	High_confidence	5	5	8	0.297056	3.000000	chr1	191151245	191152394	LTR|ERV1|LTR12E	+	chr1	191094385	191151472	STRG.21253.1	-	191094385,191151209	191094593,191151472	0.500000
testis_male_adult_54_years	chr18	3297436	3297488	3297436	-	High_confidence	3	4	22	0.816904	3.970573	chr18	3296458	3297771	LINE|L1|L1PB3	+	chr18	3296712	3297477	STRG.323855.1	-	3296712	3297477	0.909091
testis_male_adult_54_years	chr10	101457301	101457311	101457310	+	RAMPAGE_only	10	11	16	0.594112	3.906891	chr10	101456945	101457574	DNA|TcMar-Tigger|MER44D	-	chr10	101354181	101526194	BTRC|ENST00000465182.1	+	101354181,101453500,101461980,101479367,101521638,101526012	101354228,101453556,101462058,101479457,101521870,101526194	0.500000
testis_male_adult_54_years	chr15	82714006	82714024	82714006	-	High_confidence	39	39	113	4.195917	5.986207	chr15	82713915	82714076	SINE|MIR|MIRc	+	chr15	82710470	82713993	LOC338963|NR_034139.1	-	82710470,82711186,82711560,82713729	82710575,82711432,82712307,82713993	0.893805
testis_male_adult_54_years	chr22	24467222	24467238	24467222	+	RAMPAGE_only	5	6	16	0.594112	3.906891	chr22	24467213	24467377	SINE|MIR|MIR3	+	chr22	24494106	24526668	UPB1|ENST00000415388.5	+	24494106,24502125,24510748,24513323,24515200,24520386,24521985,24523618,24525710	24495507,24502213,24510843,24513485,24515370,24520468,24522028,24523773,24526668	0.500000
testis_male_adult_54_years	chr19	1015262	1015263	1015262	-	High_confidence	8	9	11	0.408452	3.121928	chr19	1015248	1015385	DNA|hAT-Charlie|MER20	+	chr19	1012112	1014304	TMEM259|ENST00000586250.1	-	1012112,1012462,1013240,1014191	1012188,1012573,1013358,1014304	0.818182
testis_male_adult_54_years	chr1	89110507	89110510	89110509	-	RAMPAGE_only	11	18	21	0.779772	3.884184	chr1	89110314	89110853	LINE|L1|L1PB1	+	chr1	89108116	89113050	GBP2|ENST00000493802.5	-	89108116,89109676,89110163,89112471,89112941	89108291,89109870,89110266,89112684,89113050	0.904762
testis_male_adult_54_years	chr1	218043486	218043534	218043504	+	High_confidence	7	13	32	1.188224	4.538910	chr1	218043544	218043704	LINE|L2|L2a	+	chr1	218043504	218059140	LOC101929631|NR_110794.1	+	218043504,218046133,218051154,218058733	218044597,218046253,218051262,218059140	0.906250
testis_male_adult_54_years	chr10	73922766	73922794	73922772	-	High_confidence	13	13	35	1.299620	5.072140	chr10	73922635	73922770	SINE|Alu|FLAM_A	-	chr10	73909977	73922777	STRG.221822.1	-	73909977,73912199,73912964,73915570,73916518,73922632	73912095,73912284,73913075,73915621,73916641,73922777	0.571429
testis_male_adult_54_years	chr10	132681274	132681275	132681274	+	High_confidence	27	27	30	1.113960	4.440224	chr10	132680477	132681589	LTR|ERV1|LTR12C	+	chr10	132681274	132783480	INPP5A|NM_001321042.1	+	132681274,132690391,132697815,132708312,132710336,132726820,132749516,132749770,132765772,132777670,132780848,132781860,132782036	132681951,132690455,132697919,132708365,132710456,132726905,132749612,132749845,132765846,132777782,132780917,132781948,132783480	1.000000
testis_male_adult_54_years	chr20	48563623	48563624	48563623	-	High_confidence	128	129	132	4.901425	5.716759	chr20	48563314	48564627	LTR|ERV1|LTR12C	-	chr20	48532974	48563636	STRG.345856.1	-	48532974,48563282	48544335,48563636	0.613636
testis_male_adult_54_years	chr9	95967361	95967386	95967361	+	RAMPAGE_only	12	12	22	0.816904	3.516028	chr9	95967328	95967398	SINE|MIR|MIR3	-	chr9	95922401	96004855	ERCC6L2|ENST00000479391.6	+	95922401,95923259,95928150,95928718,95941453,95954727,95955913,95966561,95967458,95970575,95971932,95978060,96004519	95922418,95923379,95928277,95928864,95941549,95954922,95956013,95966714,95967625,95970656,95973088,95978215,96004855	1.000000
testis_male_adult_54_years	chr16	12372726	12372727	12372726	+	High_confidence	4	4	7	0.259924	2.521641	chr16	12372669	12372779	LINE|L2|L2b	-	chr16	12372811	12373899	AC007598.1|ENST00000564577.1	+	12372811,12373668	12372909,12373899	0.857143
testis_male_adult_54_years	chr15	27214130	27214158	27214130	-	High_confidence	16	16	35	1.299620	4.822001	chr15	27214008	27214176	SINE|MIR|MIR	+	chr15	27212789	27214174	STRG.290450.1	-	27212789	27214174	0.942857
testis_male_adult_54_years	chr17	20227588	20227607	20227588	+	RAMPAGE_only	3	3	13	0.482716	3.546594	chr17	20227633	20227880	SINE|Alu|AluSx1	+	chr17	20205795	20237148	SPECC1|ENST00000584527.1	+	20205795,20227412,20231757,20232199,20236859	20205912,20227620,20231831,20232451,20237148	0.846154
testis_male_adult_54_years	chr16	86349621	86349677	86349649	-	High_confidence	87	163	503	18.677402	7.981537	chr16	86349485	86349671	LINE|L2|L2b	+	chr16	86338248	86349683	LINC00917|ENST00000599664.5	-	86338248,86338749,86349017,86349550	86338661,86338832,86349155,86349683	0.550696
testis_male_adult_54_years	chr14	51750032	51750045	51750032	+	High_confidence	3	3	8	0.297056	3.000000	chr14	51748586	51751343	LTR|ERV1|HERVE-int	+	chr14	51749953	51750415	STRG.281897.1	+	51749953	51750415	0.625000
testis_male_adult_54_years	chr1	187006704	187006705	187006704	-	High_confidence	17	19	20	0.742640	4.142664	chr1	187006408	187006963	LTR|ERV1|LTR12_	-	chr1	187006368	187006598	STRG.21567.1	-	187006368	187006598	0.700000
testis_male_adult_54_years	chr7	84978885	84978897	84978896	+	RAMPAGE_only	3	3	6	0.222792	2.584963	chr7	84978326	84981881	LINE|L1|L1PBa1	-	chr7	84983555	84984506	HNRNPA1P8|ENST00000436090.1	+	84983555	84984506	1.000000
testis_male_adult_54_years	chr3	128859777	128859778	128859777	-	RAMPAGE_only	251	255	288	10.694019	6.520901	chr3	128859679	128860156	LTR|ERV1|LTR4	-	chr3	128854559	128879421	STRG.77531.2	-	128854559,128865281,128867813,128869603,128871320,128873556,128875866	128861922,128865446,128867926,128869793,128871533,128873701,128879421	0.993056
testis_male_adult_54_years	chr11	65887622	65887624	65887622	-	High_confidence	6	10	13	0.482716	3.418296	chr11	65887463	65887575	LINE|L2|L2	-	chr11	65883924	65888436	STRG.235972.1	-	65883924,65884391,65884569,65884934,65885077,65885529,65886321,65887599,65887933,65888333	65884043,65884489,65884656,65884998,65885186,65885663,65886422,65887726,65888132,65888436	0.846154
testis_male_adult_54_years	chr7	139366273	139366274	139366273	+	RAMPAGE_only	4	4	6	0.222792	2.584963	chr7	139366251	139366318	DNA|TcMar-Tigger|Tigger10	-	chr7	139359911	139374555	STRG.174968.10	+	139359911,139363175	139360322,139374555	1.000000
testis_male_adult_54_years	chr3	71289758	71289772	71289763	+	High_confidence	35	35	72	2.673505	5.643893	chr3	71289640	71289917	SINE|Alu|AluJo	-	chr3	71289768	71305853	FOXP1-AS1|ENST00000465742.2	+	71289768,71292516,71296449,71302727,71305671	71289971,71292640,71296507,71302860,71305853	0.833333
testis_male_adult_54_years	chr13	44196012	44196016	44196012	+	High_confidence	147	147	268	9.951379	6.465768	chr13	44195961	44196131	SINE|MIR|MIRb	-	chr13	44196005	44197298	AL589745.2|ENST00000616366.1	+	44196005,44197000	44196262,44197298	0.813433
testis_male_adult_54_years	chr2	91560714	91560732	91560714	-	High_confidence	4	4	16	0.594112	3.773557	chr2	91560272	91560968	LINE|L1|L1MEd	-	chr2	91559431	91561092	STRG.41654.1	-	91559431	91561092	0.937500
testis_male_adult_54_years	chr1	93505456	93505488	93505456	+	RAMPAGE_only	9	9	22	0.816904	4.201841	chr1	93505214	93505777	LTR|ERV1|LTR10C	-	chr1	93498131	93554659	STRG.12653.2	+	93498131,93522081,93522887,93523343,93524260,93529651,93530754,93532921,93534704,93544106,93546841,93547346,93549277,93550946,93552408	93499583,93522135,93523091,93523491,93524323,93529756,93530883,93533068,93534908,93544216,93546974,93547441,93549426,93551105,93554659	0.863636
testis_male_adult_54_years	chr4	33897844	33897845	33897844	+	RAMPAGE_only	5	5	7	0.259924	2.584963	chr4	33897831	33898137	SINE|Alu|AluJb	+	chr4	33891893	33906153	STRG.92853.1	+	33891893,33892135,33898202,33905148	33892051,33892245,33898321,33906153	0.857143
testis_male_adult_54_years	chr1	33238536	33238585	33238573	+	High_confidence	3	3	19	0.705508	3.794653	chr1	33238604	33239002	LTR|ERVL-MaLR|MLT1B	+	chr1	33238793	33239413	STRG.3778.1	+	33238793	33239413	0.578947
testis_male_adult_54_years	chr7	1525614	1525618	1525617	-	High_confidence	4	6	12	0.445584	3.459432	chr7	1525410	1525784	LINE|L1|L1MC4a	-	chr7	1525253	1525607	STRG.157199.1	-	1525253	1525607	0.666667
testis_male_adult_54_years	chr5	23443528	23443529	23443528	+	High_confidence	6	7	9	0.334188	2.750000	chr5	23443334	23443684	LTR|ERVL-MaLR|THE1D	+	chr5	23443585	23526498	PRDM9|ENST00000635252.1	+	23443585,23462671,23493470,23509919,23517880,23521022,23522303,23522613,23523290,23524333,23526232	23443624,23462807,23493615,23510027,23517930,23521179,23522405,23522885,23523358,23524527,23526498	0.666667
testis_male_adult_54_years	chr4	46878811	46878812	46878811	-	RAMPAGE_only	4	4	7	0.259924	2.584963	chr4	46878557	46878968	LTR|ERVL-MaLR|MLT1J	-	chr4	46734831	46876760	COX7B2|ENST00000543208.5	-	46734831,46844959,46876638	46735241,46845014,46876760	0.714286
testis_male_adult_54_years	chr1	45522802	45522872	45522858	-	High_confidence	3	3	13	0.482716	3.392747	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	1.000000
testis_male_adult_54_years	chr2	309330	309351	309350	-	High_confidence	19	19	33	1.225356	4.577820	chr2	309218	309376	LTR|ERVL-MaLR|MLT1J-int	+	chr2	306058	309379	AC079779.3|ENST00000416685.1	-	306058,308971	306240,309379	0.666667
testis_male_adult_54_years	chr6	17795003	17795023	17795022	-	High_confidence	3	3	7	0.259924	2.584963	chr6	17794871	17795300	LINE|L1|L1ME2	-	chr6	17785592	17795032	KIF13A|ENST00000514714.1	-	17785592,17787775,17794248,17794571,17794859	17785641,17787875,17794395,17794704,17795032	0.857143
testis_male_adult_54_years	chr1	220829245	220829255	220829246	+	High_confidence	16	21	65	2.413581	4.545413	chr1	220829216	220829506	LINE|L2|L2b	-	chr1	220829249	220829773	STRG.25335.1	+	220829249	220829773	0.938462
testis_male_adult_54_years	chr9	88418170	88418199	88418198	+	RAMPAGE_only	3	3	7	0.259924	2.584963	chr9	88417767	88418344	LTR|ERVL|MER21C	-	chr9	88393475	88475203	STRG.205859.5	+	88393475,88426381,88448940,88462495,88468371,88475077	88418951,88426591,88448989,88462749,88468605,88475203	0.857143
testis_male_adult_54_years	chr15	89312965	89312966	89312965	+	RAMPAGE_only	8	8	11	0.408452	3.095795	chr15	89313009	89313328	LINE|L1|L1MB8	+	chr15	89307858	89316426	FANCI|ENST00000566615.1	+	89307858,89312903,89314611,89315281,89316396	89308092,89312972,89314707,89315389,89316426	0.818182
testis_male_adult_54_years	chr14	34536082	34536110	34536109	-	High_confidence	4	5	10	0.371320	2.947703	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.600000
testis_male_adult_54_years	chr20	22282847	22282875	22282847	-	High_confidence	14	14	32	1.188224	4.567100	chr20	22282655	22283111	LTR|ERV1|MER101	+	chr20	22274973	22282847	STRG.342800.1	-	22274973,22282353	22280540,22282847	0.843750
testis_male_adult_54_years	chr14	23300398	23300399	23300398	-	High_confidence	7	7	11	0.408452	3.121928	chr14	23300347	23300509	SINE|MIR|MIR3	-	chr14	23298298	23300940	PPP1R3E|ENST00000561178.5	-	23298298,23299400,23300106	23298917,23299541,23300940	0.727273
testis_male_adult_54_years	chr12	6016541	6016562	6016541	-	RAMPAGE_only	2	2	8	0.297056	2.807355	chr12	6016356	6016502	SINE|MIR|MIR3	-	chr12	5948873	6124665	STRG.247383.1	-	5948873,5949785,5951843,5952390,5953495,5967485,5968126,5969210,5971598,5976110,5981785,5983149,5985044,5985562,5991818,5993861,5994414,5996001,6011616,6012086,6013480,6016088,6016515,6016753,6018364,6021899,6022739,6023630,6025579,6025905,6029341,6031443,6034687,6036387,6044290,6046722,6052542,6056856,6057848,6062953,6064245,6065136,6071296,6072330,6073618,6075334,6095459,6110373,6110865,6121173,6122724,6123141,6124420	5949203,5949883,5951883,5952519,5953594,5967602,5968167,5969391,5971709,5976260,5981991,5983254,5985119,5985665,5992018,5994203,5994607,5996222,6011794,6012130,6013645,6016232,6016656,6016870,6019743,6022035,6022898,6023787,6025693,6026046,6029488,6031578,6034826,6036491,6044451,6046817,6052783,6057072,6058044,6063054,6064384,6065273,6071343,6072442,6073741,6075551,6095584,6110582,6110968,6121338,6122966,6123196,6124665	0.750000
testis_male_adult_54_years	chr14	95158929	95158947	95158929	+	RAMPAGE_only	3	4	8	0.297056	2.500000	chr14	95158691	95158990	SINE|Alu|AluSc	-	chr14	95157759	95179925	DICER1-AS1|ENST00000435343.1	+	95157759,95158192,95158875,95179503	95157858,95158234,95159035,95179925	0.625000
testis_male_adult_54_years	chr2	43723745	43723777	43723745	+	RAMPAGE_only	2	2	7	0.259924	2.807355	chr2	43723216	43723753	LTR|ERV1|MER34	-	chr2	43637338	43767984	STRG.35080.3	+	43637338,43644670,43678862,43692513,43694430,43695142,43697170,43699646,43703980,43706321,43707400,43709989,43710219,43710488,43712224,43720668,43726271,43729636,43731489,43738340,43740945,43742727,43743833,43753618,43757118,43758899,43762303,43764227,43765412	43637379,43644796,43678925,43692663,43694514,43695224,43697356,43700608,43704056,43706416,43707545,43710126,43710330,43710575,43712383,43720749,43726451,43729745,43731602,43738520,43741126,43742918,43745963,43753760,43757264,43759029,43762390,43764365,43767984	0.714286
testis_male_adult_54_years	chr13	51932009	51932010	51932009	+	High_confidence	8	8	8	0.297056	2.750000	chr13	51932036	51932162	DNA|hAT-Blackjack|MER94	+	chr13	51931875	51933149	STRG.269318.1	+	51931875	51933149	0.500000
testis_male_adult_54_years	chr3	176544503	176544526	176544508	-	High_confidence	5	5	15	0.556980	3.521641	chr3	176544186	176544754	LTR|ERVL-MaLR|MLT1E2	+	chr3	176544153	176544632	STRG.83665.1	-	176544153	176544632	0.666667
testis_male_adult_54_years	chr6	26005780	26005816	26005783	-	RAMPAGE_only	4	4	11	0.408452	3.277613	chr6	26005649	26005925	LTR|ERVL|LTR50	+	chr6	25983811	25999167	U91328.2|ENST00000608931.1	-	25983811,25999086	25984084,25999167	0.636364
testis_male_adult_54_years	chr17	1506274	1506292	1506283	-	RAMPAGE_only	6	6	16	0.594112	4.000000	chr17	1506019	1506324	SINE|Alu|AluSz	-	chr17	1496488	1498201	INPP5K|ENST00000461552.1	-	1496488,1497935	1496803,1498201	0.562500
testis_male_adult_54_years	chr10	5699514	5699555	5699514	+	RAMPAGE_only	5	5	22	0.816904	4.186704	chr10	5699528	5699730	LINE|L1|L1M7	+	chr10	5684964	5714176	STRG.213055.10	+	5684964,5712393,5712822,5714134	5709663,5712539,5712918,5714176	1.000000
testis_male_adult_54_years	chr2	181954309	181954347	181954340	+	High_confidence	27	27	85	3.156221	5.556141	chr2	181954369	181954454	DNA|hAT-Charlie|MER119	+	chr2	181954334	182117444	STRG.52510.3	+	181954334,181975218,181987838,182061441,182063730,182117206	181954634,181975264,181987899,182061479,182063791,182117444	0.941176
testis_male_adult_54_years	chr8	144427905	144427967	144427932	+	High_confidence	9	9	35	1.299620	4.879143	chr8	144427788	144427946	LINE|L2|L2	-	chr8	144428130	144431666	STRG.196147.1	+	144428130	144431666	0.742857
testis_male_adult_54_years	chr10	38188265	38188266	38188265	+	RAMPAGE_only	6	6	7	0.259924	2.584963	chr10	38187522	38192988	LINE|L1|L1PA8	+	chr10	38184650	38190037	STRG.216936.2	+	38184650	38190037	0.857143
testis_male_adult_54_years	chr20	40641202	40641220	40641202	-	High_confidence	5	5	13	0.482716	3.584963	chr20	40641082	40641188	SINE|MIR|MIRb	-	chr20	40605493	40641200	STRG.344126.1	-	40605493,40619158,40635587,40640533,40641104	40605544,40619301,40635665,40640624,40641200	0.615385
testis_male_adult_54_years	chr9	123801452	123801453	123801452	-	High_confidence	6	6	8	0.297056	2.750000	chr9	123801152	123801690	LINE|L1|L1MB3	-	chr9	123548835	123801561	STRG.210657.5	-	123548835,123583168,123609435,123630375,123652012,123667025,123671290,123676719,123757702,123769513,123792586,123792873,123798260,123801201	123557695,123583270,123609481,123630476,123652123,123667079,123671371,123676789,123757822,123769563,123792630,123793030,123798381,123801561	0.875000
testis_male_adult_54_years	chr7	153413531	153413574	153413531	+	High_confidence	10	10	42	1.559544	4.784942	chr7	153409397	153413807	LTR|ERV1|HERV-Fc1-int	-	chr7	153413118	153422494	STRG.177299.1	+	153413118,153422243	153413850,153422494	0.952381
testis_male_adult_54_years	chr12	26737353	26737367	26737366	-	RAMPAGE_only	4	4	8	0.297056	2.521641	chr12	26737246	26737552	SINE|Alu|AluSg	-	chr12	26722437	26726013	ITPR2|ENST00000536627.1	-	26722437,26724655,26725649	26722555,26724742,26726013	0.875000
testis_male_adult_54_years	chr8	68508966	68508988	68508966	+	RAMPAGE_only	3	3	6	0.222792	2.584963	chr8	68508798	68509078	LTR|ERV1|MER61A	-	chr8	68521717	68776568	STRG.185654.1	+	68521717,68532982,68640375,68708993,68721360,68776398	68521971,68533149,68640511,68709079,68721437,68776568	0.500000
testis_male_adult_54_years	chr22	19950901	19950990	19950958	+	High_confidence	38	42	229	8.503231	6.208199	chr22	19950523	19951077	LTR|ERV1|MER31-int	-	chr22	19950941	19968589	COMT|ENST00000412786.5	+	19950941,19961198,19962526,19963565,19964167,19968535	19951052,19961289,19962815,19963759,19964299,19968589	0.925764
testis_male_adult_54_years	chr22	45204456	45204481	45204480	-	RAMPAGE_only	6	6	13	0.482716	3.084963	chr22	45204453	45204569	SINE|MIR|MIRb	+	chr22	45195827	45205849	KIAA0930|ENST00000423262.5	-	45195827,45197789,45199872,45202989,45203844,45205216,45205629,45205792	45197216,45197948,45200035,45203184,45203985,45205318,45205641,45205849	0.923077
testis_male_adult_54_years	chr5	96740552	96740577	96740552	+	High_confidence	2	2	6	0.222792	2.584963	chr5	96740252	96740672	LTR|ERVL-MaLR|MLT1B	-	chr5	96741324	96773055	CAST|ENST00000510500.5	+	96741324,96741493,96742654,96746341,96747344,96748517,96750586,96754059,96754657,96757443,96757582,96762273,96765223,96766052,96767437,96767906,96770530,96771643,96772639	96741358,96741580,96742756,96746425,96747392,96748613,96750682,96754161,96754741,96757494,96757654,96762372,96765325,96766145,96767482,96767999,96770602,96771702,96773055	0.666667
testis_male_adult_54_years	chr3	111074885	111074910	111074885	+	High_confidence	10	14	32	1.188224	4.625000	chr3	111074923	111074987	LINE|CR1|L3	+	chr3	111074894	111112117	NECTIN3|ENST00000478327.1	+	111074894,111077184,111112009	111075242,111077277,111112117	0.750000
testis_male_adult_54_years	chr1	20028203	20028215	20028203	+	High_confidence	4	5	13	0.482716	3.700440	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028178	20091190	PLA2G5|ENST00000486277.5	+	20028178,20046101,20054791,20059631,20066023,20068872,20084820,20086082,20089788,20090567	20028709,20046141,20054839,20059692,20066129,20069032,20084870,20086227,20089895,20091190	0.769231
testis_male_adult_54_years	chr1	217826232	217826279	217826232	-	RAMPAGE_only	35	38	159	5.903990	6.176403	chr1	217826034	217826413	LTR|ERVL-MaLR|MLT1B	-	chr1	217774258	217811833	STRG.25036.1	-	217774258,217776517,217776790,217782124,217811538	217774514,217776671,217776888,217782299,217811833	0.566038
testis_male_adult_54_years	chr12	132641062	132641114	132641062	-	High_confidence	2	2	13	0.482716	3.584963	chr12	132640972	132641176	SINE|MIR|MIRb	+	chr12	132634364	132641378	POLE|ENST00000434528.3	-	132634364,132635891,132638013,132639124,132641017	132634378,132636024,132638139,132639298,132641378	0.846154
testis_male_adult_54_years	chr13	76689595	76689632	76689595	-	High_confidence	4	5	13	0.482716	3.392747	chr13	76689591	76689802	LTR|ERVL-MaLR|MLT1L	+	chr13	76689019	76689575	STRG.271760.2	-	76689019	76689575	0.769231
testis_male_adult_54_years	chr4	137943182	137943234	137943202	+	High_confidence	4	5	25	0.928300	4.088779	chr4	137941888	137943437	LTR|ERV1|LTR12C	+	chr4	137942830	137954006	STRG.103893.1	+	137942830,137950180,137952319	137943401,137950250,137954006	0.720000
testis_male_adult_54_years	chr11	65181215	65181298	65181215	+	High_confidence	4	4	33	1.225356	4.663910	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.969697
testis_male_adult_54_years	chr10	19768160	19768211	19768169	+	RAMPAGE_only	20	23	65	2.413581	5.499291	chr10	19768143	19768495	LTR|ERV1|LTR23	+	chr10	19816238	20289856	PLXDC2|ENST00000377252.4	+	19816238,20001774,20046868,20068169,20143294,20147783,20164467,20176998,20177327,20211668,20217425,20219063,20245344,20279702	19817191,20001986,20047015,20068239,20143417,20147902,20164567,20177094,20177409,20211729,20217576,20219102,20245505,20289856	0.800000
testis_male_adult_54_years	chr5	4615803	4615827	4615813	-	High_confidence	3	4	11	0.408452	3.321928	chr5	4615428	4621437	LINE|L1|L1PA2	+	chr5	4615433	4616109	STRG.111700.1	-	4615433	4616109	0.545455
testis_male_adult_54_years	chr4	86715021	86715022	86715021	+	RAMPAGE_only	123	127	139	5.161350	6.293183	chr4	86714736	86715062	LINE|L2|L2c	-	chr4	86635251	86815149	PTPN13|ENST00000511467.1	+	86635251,86672364,86686709,86689004,86693586,86701240,86716529,86717023,86722211,86732399,86732591,86734302,86734736,86735593,86741633,86744965,86750469,86751026,86753008,86758259,86758677,86758941,86762726,86764592,86765394,86766431,86767816,86769768,86770100,86771170,86772777,86774372,86775170,86775441,86780401,86782200,86784464,86785230,86785847,86796873,86799100,86803708,86805278,86807559,86809768,86811045,86814455	86635371,86672543,86686775,86689190,86693674,86701801,86716625,86717117,86722434,86732474,86732766,86734456,86734875,86735746,86741816,86745128,86750887,86751124,86753065,86758349,86758785,86759073,86763190,86764739,86765488,86766517,86767976,86769983,86770199,86771535,86772958,86774531,86775342,86775652,86780472,86782262,86784558,86785368,86785936,86796929,86799204,86803857,86805369,86807897,86809984,86811108,86815149	0.848921
testis_male_adult_54_years	chr6	108961028	108961029	108961028	+	RAMPAGE_only	7	7	7	0.259924	2.807355	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108959459	108965117	ARMC2|ENST00000481850.1	+	108959459,108961571,108962013,108964179,108964979	108959519,108961694,108962127,108964312,108965117	0.571429
testis_male_adult_54_years	chr14	50159437	50159441	50159440	-	RAMPAGE_only	6	7	14	0.519848	3.546594	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.928571
testis_male_adult_54_years	chr9	77586824	77586835	77586824	-	RAMPAGE_only	7	7	18	0.668376	3.392147	chr9	77586465	77587102	LTR|ERV1|LTR9D	-	chr9	77423078	77648307	GNA14|ENST00000341700.6	-	77423078,77425561,77428906,77431320,77434367,77529068,77647669	77424169,77425715,77429036,77431449,77434522,77529253,77648307	0.888889
testis_male_adult_54_years	chr17	69314849	69314897	69314849	-	High_confidence	2	2	9	0.334188	2.947703	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	1.000000
testis_male_adult_54_years	chr5	180830869	180830870	180830869	-	High_confidence	5	5	7	0.259924	2.584963	chr5	180830726	180830835	LTR|ERV1|MER67A	-	chr5	180829953	180831605	HEIH|ENST00000623091.1	-	180829953	180831605	0.714286
testis_male_adult_54_years	chr17	28928240	28928250	28928249	-	High_confidence	5	6	14	0.519848	3.700440	chr17	28928124	28928367	LTR|ERVL-MaLR|MLT1H1	+	chr17	28921794	28928290	PHF12|ENST00000578900.6	-	28921794,28923908,28926990,28928197	28921808,28924302,28927063,28928290	0.500000
testis_male_adult_54_years	chr19	9620965	9620998	9620965	+	High_confidence	2	2	9	0.334188	2.750000	chr19	9620760	9621007	SINE|Alu|AluSx	+	chr19	9621290	9633885	ZNF561-AS1|ENST00000591932.5	+	9621290,9632227,9633459	9621350,9632417,9633885	0.555556
testis_male_adult_54_years	chr12	31782181	31782189	31782188	+	High_confidence	13	13	21	0.779772	3.787144	chr12	31781960	31782812	LTR|ERV1|LTR1A2	+	chr12	31782146	31782545	STRG.251178.1	+	31782146	31782545	0.761905
testis_male_adult_54_years	chr15	69072998	69072999	69072998	+	High_confidence	6	8	8	0.297056	2.750000	chr15	69072763	69073273	LTR|ERVL-MaLR|MLT1F1	+	chr15	69072939	69091073	EWSAT1|ENST00000558369.5	+	69072939,69074583,69089537,69090914	69073190,69074674,69089597,69091073	0.500000
testis_male_adult_54_years	chr13	67326292	67326312	67326298	+	RAMPAGE_only	8	8	24	0.891168	4.262692	chr13	67325927	67326676	LTR|ERVL|ERVL-B4-int	-	chr13	67372386	67379976	LINC00364|ENST00000415120.1	+	67372386,67374864,67379550	67372470,67374965,67379976	0.750000
testis_male_adult_54_years	chr1	60622522	60622549	60622548	-	High_confidence	6	6	10	0.371320	3.121928	chr1	60622473	60622644	LINE|L2|L2c	+	chr1	60621684	60621953	STRG.7853.1	-	60621684	60621953	0.900000
testis_male_adult_54_years	chr11	94745255	94745297	94745275	+	RAMPAGE_only	7	10	37	1.373884	5.155399	chr11	94745064	94745325	LINE|L1|L1PA6	-	chr11	94768341	94876753	AMOTL1|NM_130847.2	+	94768341,94795010,94799389,94821529,94830049,94831451,94850113,94853932,94859524,94864734,94865941,94869197,94870688	94768560,94795160,94800311,94821821,94830194,94831541,94850259,94854082,94859715,94864860,94866168,94869473,94876753	0.594595
testis_male_adult_54_years	chr7	128725025	128725052	128725025	+	RAMPAGE_only	2	2	9	0.334188	2.500000	chr7	128724891	128725109	SINE|MIR|MIR	+	chr7	128715388	128731743	FAM71F1|ENST00000315184.9	+	128715388,128716812,128718830,128723196,128726827,128729901,128731099	128715690,128716997,128719083,128723318,128726871,128730069,128731743	0.555556
testis_male_adult_54_years	chr9	136341937	136341951	136341950	+	RAMPAGE_only	5	5	14	0.519848	3.664498	chr9	136341826	136341950	SINE|Alu|AluJr	-	chr9	136331982	136359605	GPSM1|ENST00000354753.7	+	136331982,136334446,136335965,136336920,136337440,136337845,136338554,136339706,136340869,136348696,136349586,136355689,136356341,136358013	136332170,136334668,136336101,136337072,136337564,136337961,136338710,136339815,136340993,136348767,136349763,136355846,136356550,136359605	0.857143
testis_male_adult_54_years	chr1	179727665	179727690	179727665	-	High_confidence	2	2	13	0.482716	3.022055	chr1	179727227	179727791	LINE|L2|L2a	-	chr1	179727417	179727740	STRG.20223.1	-	179727417	179727740	0.692308
testis_male_adult_54_years	chr4	137941788	137941799	137941798	+	RAMPAGE_only	7	7	15	0.556980	2.985228	chr4	137941568	137941868	SINE|Alu|AluY	+	chr4	137942830	137954006	STRG.103893.1	+	137942830,137950180,137952319	137943401,137950250,137954006	0.933333
testis_male_adult_54_years	chr6	26474345	26474346	26474345	+	RAMPAGE_only	12	12	18	0.668376	3.350209	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.777778
testis_male_adult_54_years	chr6	102910988	102911022	102911021	+	High_confidence	4	4	25	0.928300	4.501629	chr6	102909877	102911203	LTR|ERV1|LTR12C	-	chr6	102910467	102912394	STRG.147803.1	+	102910467	102912394	0.560000
testis_male_adult_54_years	chr20	57135966	57136007	57135996	-	RAMPAGE_only	4	4	12	0.445584	3.584963	chr20	57135987	57136154	LTR|ERVL-MaLR|MLT1O	-	chr20	57119984	57132048	STRG.346707.1	-	57119984,57131994	57120207,57132048	0.666667
testis_male_adult_54_years	chr18	55665276	55665277	55665276	+	High_confidence	8	10	12	0.445584	2.855389	chr18	55665162	55665592	LTR|ERV1|LTR12C	+	chr18	55665298	55665688	STRG.327763.1	+	55665298	55665688	0.750000
testis_male_adult_54_years	chr6	143099686	143099687	143099686	-	High_confidence	7	7	7	0.259924	2.807355	chr6	143099527	143099667	LINE|L1|L1ME3F	-	chr6	143094033	143099645	AL023581.1|ENST00000423500.1	-	143094033,143099483	143094326,143099645	0.571429
testis_male_adult_54_years	chr19	2233662	2233682	2233681	-	RAMPAGE_only	3	4	7	0.259924	2.584963	chr19	2233590	2233758	SINE|Alu|AluJb	+	chr19	2233153	2236263	PLEKHJ1|ENST00000588450.1	-	2233153,2234149,2236154	2234061,2235990,2236263	0.714286
testis_male_adult_54_years	chr22	38653857	38653877	38653876	-	High_confidence	4	4	9	0.334188	3.169925	chr22	38653785	38653950	LINE|L2|L2b	-	chr22	38636545	38653853	FAM227A|ENST00000608409.5	-	38636545,38638745,38639654,38645562,38650026,38653809	38636597,38638822,38639724,38645645,38650262,38653853	0.555556
testis_male_adult_54_years	chr1	72765045	72765050	72765049	+	High_confidence	24	24	40	1.485280	5.028992	chr1	72763753	72765386	LINE|L1|L1M4a2	+	chr1	72765030	72791282	AL583808.2|ENST00000418078.3	+	72765030,72775271,72778272,72780106,72783669,72786626,72791064	72765080,72775544,72778357,72780293,72783883,72786981,72791282	0.525000
testis_male_adult_54_years	chr18	10372354	10372386	10372354	-	High_confidence	4	4	18	0.668376	4.169925	chr18	10372191	10372967	LINE|L2|L2	+	chr18	10366450	10372370	STRG.324195.1	-	10366450,10371345,10372226	10366649,10371454,10372370	0.611111
testis_male_adult_54_years	chr1	147517874	147517875	147517874	-	High_confidence	1264	1385	1537	57.071901	7.361447	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147376306	147517875	STRG.16179.2	-	147376306,147384751,147470994,147506047,147515520,147516085	147384049,147384863,147478977,147514448,147515676,147517875	0.953155
testis_male_adult_54_years	chr13	51468298	51468302	51468301	+	RAMPAGE_only	5	5	10	0.371320	2.921928	chr13	51468220	51468353	SINE|MIR|MIRb	-	chr13	51454163	51468780	INTS6-AS1|ENST00000594358.5	+	51454163,51468267	51454329,51468780	0.900000
testis_male_adult_54_years	chr9	92536601	92536602	92536601	-	High_confidence	11	12	12	0.445584	3.459432	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.916667
testis_male_adult_54_years	chr8	102299080	102299081	102299080	-	RAMPAGE_only	6	6	6	0.222792	2.584963	chr8	102299077	102299124	LTR|ERV1|MER66B	+	chr8	102252272	102412689	UBR5|NM_001282873.1	-	102252272,102257631,102258984,102261145,102261914,102264473,102265099,102266946,102268977,102270038,102271133,102272528,102275520,102275707,102276971,102278825,102279035,102280393,102281288,102285126,102285512,102286359,102287432,102288154,102289452,102293604,102293954,102294981,102295203,102295413,102295635,102296892,102297457,102298391,102298847,102299451,102299999,102304042,102305084,102311298,102311734,102312133,102312341,102313803,102314743,102323310,102326545,102327741,102329089,102329282,102342472,102345395,102346235,102346902,102360070,102360588,102361124,102361581,102412172	102254514,102257717,102259129,102261259,102262070,102264558,102265275,102267007,102269108,102270183,102271245,102272772,102275619,102275828,102277192,102278939,102279208,102280467,102281519,102285338,102285781,102286617,102287564,102288266,102289576,102293844,102294115,102295111,102295330,102295532,102295782,102296984,102297606,102298489,102298971,102299547,102300151,102304169,102305295,102311496,102311889,102312245,102312485,102313916,102314853,102323495,102326663,102327896,102329200,102329399,102342684,102345545,102346395,102347092,102360190,102360665,102361206,102361626,102412689	1.000000
testis_male_adult_54_years	chr12	9450327	9450363	9450327	+	High_confidence	19	21	50	1.856601	4.570588	chr12	9449408	9450949	LTR|ERV1|LTR12C	-	chr12	9450281	9585476	STRG.246806.2	+	9450281,9461323,9584105	9450632,9461434,9585476	0.500000
testis_male_adult_54_years	chr13	23107959	23107964	23107959	+	High_confidence	27	31	45	1.670940	4.566265	chr13	23107658	23108181	LTR|ERV1|LTR12F	+	chr13	23107876	23108884	STRG.264984.1	+	23107876	23108884	0.955556
testis_male_adult_54_years	chr12	50763490	50763536	50763490	+	High_confidence	2	2	11	0.408452	2.921928	chr12	50763350	50763657	SINE|Alu|AluJo	+	chr12	50763709	50814192	ATF1|ENST00000552510.5	+	50763709,50780139,50795908,50809455,50814009	50763741,50780238,50796009,50809589,50814192	0.818182
testis_male_adult_54_years	chr5	61698403	61698449	61698428	-	High_confidence	15	20	98	3.638937	5.929608	chr5	61698281	61698759	LINE|L2|L2a	+	chr5	61663149	61698432	AC026746.1|ENST00000513386.1	-	61663149,61667756,61677622,61687844,61688861,61695982,61697409,61697911	61663543,61667877,61677691,61688014,61688996,61696018,61697639,61698432	0.928571
testis_male_adult_54_years	chr14	102171385	102171397	102171385	+	RAMPAGE_only	26	32	54	2.005129	5.320191	chr14	102171255	102171417	SINE|Alu|AluJr	-	chr14	102178941	102208902	WDR20|ENST00000558448.5	+	102178941,102194937,102197754,102208602	102178976,102195120,102197847,102208902	0.796296
testis_male_adult_54_years	chr2	79565804	79565841	79565804	+	RAMPAGE_only	5	5	12	0.445584	3.251629	chr2	79565473	79566134	LINE|L2|L2	-	chr2	79523182	80648868	CTNNA2|NM_001282598.1	+	79523182,79651551,79744386,79858012,79869815,79874075,79909593,80393210,80419448,80544981,80545906,80555692,80574162,80581705,80589303,80604073,80608183,80647584	79523309,79651658,79744582,79858179,79869935,79874342,79909797,80393291,80419601,80545074,80546063,80555893,80574314,80581819,80589485,80604179,80608318,80648868	0.750000
testis_male_adult_54_years	chr11	16430924	16430925	16430924	-	RAMPAGE_only	6	6	9	0.334188	3.000000	chr11	16430767	16431382	LINE|L2|L2a	+	chr11	16341010	16434450	SOX6|ENST00000529469.1	-	16341010,16434143	16341252,16434450	0.555556
testis_male_adult_54_years	chr3	535661	535662	535661	-	High_confidence	168	172	178	6.609498	5.509126	chr3	535186	536320	LTR|ERV1|LTR12D	-	chr3	534114	535646	STRG.60397.1	-	534114	535646	0.960674
testis_male_adult_54_years	chr7	92477515	92477545	92477515	-	High_confidence	63	64	142	5.272746	5.924261	chr7	92477412	92478192	LTR|ERV1|LTR17	-	chr7	92468380	92477539	STRG.168500.1	-	92468380,92470405,92477381	92469403,92475306,92477539	0.929577
testis_male_adult_54_years	chr1	15599648	15599657	15599648	-	RAMPAGE_only	8	8	21	0.779772	4.121928	chr1	15599604	15599866	DNA|hAT-Charlie|MER1B	-	chr1	15586135	15603626	AL121992.1|ENST00000428945.1	-	15586135,15603088	15588442,15603626	0.952381
testis_male_adult_54_years	chr19	15829013	15829017	15829013	+	High_confidence	2	2	7	0.259924	2.521641	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15828957	15835415	UCA1|ENST00000642256.1	+	15828957,15831207,15834501	15829338,15831356,15835415	0.857143
testis_male_adult_54_years	chr9	125335182	125335213	125335212	+	RAMPAGE_only	5	5	14	0.519848	3.546594	chr9	125334050	125335395	DNA|hAT-Charlie|Charlie1a	+	chr9	125302306	125342234	GAPVD1|ENST00000436712.2	+	125302306,125305062,125307412,125307690,125309928,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176,125342218	125302826,125305149,125307547,125307880,125310009,125312612,125321499,125323923,125326589,125330218,125332060,125332629,125337095,125337591,125341264,125342234	0.785714
testis_male_adult_54_years	chr10	9940690	9940702	9940701	-	High_confidence	6	6	10	0.371320	3.321928	chr10	9940629	9940801	LINE|L1|L1MD2	-	chr10	9940262	9940736	STRG.213621.1	-	9940262	9940736	0.500000
testis_male_adult_54_years	chrX	16712906	16712959	16712958	-	High_confidence	11	11	70	2.599241	5.636912	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16587998	16712979	CTPS2|NM_019857.4	-	16587998,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712979	0.842857
testis_male_adult_54_years	chr11	57793732	57793744	57793743	+	RAMPAGE_only	5	5	16	0.594112	3.500000	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57781602	57796584	CTNND1|ENST00000530068.5	+	57781602,57791491,57794009,57795576,57796456	57781646,57791673,57794081,57795729,57796584	0.937500
testis_male_adult_54_years	chr13	23952361	23952371	23952361	-	RAMPAGE_only	13	13	22	0.816904	4.277613	chr13	23952169	23953160	LTR|ERV1|LTR12D	-	chr13	23902635	23954252	STRG.265116.2	-	23902635,23909097,23941289,23941625,23945749	23902723,23909241,23941469,23941740,23954252	1.000000
testis_male_adult_54_years	chrY	8299685	8299686	8299685	+	High_confidence	17	17	17	0.631244	3.734522	chrY	8298435	8300101	LTR|ERV1|LTR12C	+	chrY	8299776	8300180	STRG.371852.1	+	8299776	8300180	0.882353
testis_male_adult_54_years	chr6	127214180	127214181	127214180	-	High_confidence	105	105	132	4.901425	4.975526	chr6	127213766	127215154	LTR|ERV1|LTR12C	-	chr6	127177052	127214194	STRG.151912.1	-	127177052,127179767,127213745	127177463,127179996,127214194	0.992424
testis_male_adult_54_years	chr11	64620705	64620720	64620705	-	RAMPAGE_only	3	3	8	0.297056	2.807355	chr11	64620584	64620687	SINE|tRNA-Deu|AmnSINE2	-	chr11	64606173	64623996	NRXN2|ENST00000464307.5	-	64606173,64620293,64622752	64608082,64620372,64623996	0.500000
testis_male_adult_54_years	chr7	154059345	154059386	154059385	-	High_confidence	13	13	47	1.745205	4.819985	chr7	154059367	154059965	LTR|ERV1|HERVE-int	+	chr7	154055584	154059561	AC006019.1|ENST00000425591.1	-	154055584,154057432	154055925,154059561	0.978723
testis_male_adult_54_years	chr20	40619813	40619814	40619813	-	RAMPAGE_only	7	7	10	0.371320	2.947703	chr20	40619322	40625356	LINE|L1|L1PA3	+	chr20	40605493	40641200	STRG.344126.1	-	40605493,40619158,40635587,40640533,40641104	40605544,40619301,40635665,40640624,40641200	0.500000
testis_male_adult_54_years	chr12	102305878	102305889	102305888	+	RAMPAGE_only	8	10	24	0.891168	4.251629	chr12	102305289	102306010	LTR|ERV1|MER41-int	+	chr12	102197584	102402596	HELLPAR|ENST00000626826.1	+	102197584	102402596	0.833333
testis_male_adult_54_years	chr17	18572659	18572660	18572659	-	RAMPAGE_only	4	4	7	0.259924	2.584963	chr17	18571688	18572720	LINE|L1|L1MA5	+	chr17	18551027	18554265	CCDC144B|ENST00000609959.1	-	18551027,18551505,18553152,18553972	18551111,18551715,18553373,18554265	0.714286
testis_male_adult_54_years	chr11	58578102	58578156	58578102	-	High_confidence	34	37	168	6.238178	6.304786	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58542379	58578166	STRG.234872.7	-	58542379,58549972,58551064,58554840,58564154,58570555,58571214,58576733	58549867,58550146,58551232,58554940,58564201,58570713,58571336,58578166	0.952381
testis_male_adult_54_years	chr6	10074967	10074990	10074973	-	High_confidence	7	7	20	0.742640	3.892407	chr6	10073719	10075241	LTR|ERV1|LTR12C	-	chr6	10060436	10074933	STRG.135597.3	-	10060436,10073197	10060766,10074933	0.900000
testis_male_adult_54_years	chr14	54392570	54392610	54392570	-	High_confidence	39	41	63	2.339317	5.584345	chr14	54392054	54393277	LTR|ERV1|LTR12C	-	chr14	54384297	54393495	STRG.282292.1	-	54384297,54392326	54388244,54393495	0.571429
testis_male_adult_54_years	chr2	111681842	111681873	111681848	-	High_confidence	5	5	37	1.373884	5.072140	chr2	111681667	111683253	LTR|ERV1|LTR12C	+	chr2	111681544	111681876	STRG.43526.1	-	111681544	111681876	0.540541
testis_male_adult_54_years	chr18	55893016	55893051	55893050	+	High_confidence	3	4	13	0.482716	3.334679	chr18	55887412	55893439	LINE|L1|L1PA3	-	chr18	55893037	56023462	AC009271.1|ENST00000589440.1	+	55893037,56017727,56023401	55893442,56017779,56023462	0.692308
testis_male_adult_54_years	chr9	13038059	13038091	13038090	-	RAMPAGE_only	5	5	20	0.742640	4.142664	chr9	13037883	13043909	LINE|L1|L1PA2	+	chr9	12958502	13034326	AL161449.2|ENST00000649120.1	-	12958502,12962319,13003434,13004932,13029408,13034170	12959988,12962417,13003622,13005304,13029577,13034326	0.500000
testis_male_adult_54_years	chr9	76478161	76478162	76478161	+	High_confidence	21	21	23	0.854036	4.011365	chr9	76477878	76478576	LTR|ERV1|LTR12_	+	chr9	76478340	76507416	GCNT1|NM_001097635.1	+	76478340,76500915,76502238	76478530,76501061,76507416	0.695652
testis_male_adult_54_years	chr8	17692225	17692268	17692258	-	High_confidence	11	11	43	1.596676	4.851335	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.744186
testis_male_adult_54_years	chr15	77660031	77660063	77660062	+	High_confidence	9	9	43	1.596676	4.802915	chr15	77660081	77660202	SINE|MIR|MIRc	+	chr15	77660051	77668074	LINGO1-AS2|ENST00000557799.1	+	77660051,77666959,77667670	77660183,77667086,77668074	0.953488
testis_male_adult_54_years	chr2	164993858	164993881	164993877	+	RAMPAGE_only	8	8	27	1.002564	4.430632	chr2	164993632	164993938	LTR|ERV1|LTR9	-	chr2	164992156	165208261	AC019197.1|ENST00000629817.2	+	164992156,164993460,165091119,165130044,165139598,165194895,165208112	164992168,164993640,165091299,165130204,165139709,165195083,165208261	0.555556
testis_male_adult_54_years	chr1	196933680	196933713	196933682	-	High_confidence	13	24	81	3.007693	5.243628	chr1	196933509	196934428	LTR|ERV1|LTR12C	+	chr1	196907817	196933680	STRG.22287.1	-	196907817,196922894,196930393,196933456	196910148,196923011,196930496,196933680	0.567901
testis_male_adult_54_years	chr13	19239778	19239792	19239791	-	RAMPAGE_only	5	5	9	0.334188	2.750000	chr13	19239586	19239800	LTR|ERVL-MaLR|MLT1F	-	chr13	19201636	19227432	PSPC1P1|ENST00000442352.1	-	19201636,19204339,19208482,19219709,19227247	19201822,19204509,19208540,19219775,19227432	0.777778
testis_male_adult_54_years	chr10	103898400	103898401	103898400	-	RAMPAGE_only	11	11	14	0.519848	3.807355	chr10	103898173	103898363	LINE|L1|L1ME4b	-	chr10	103882744	103900153	STN1|ENST00000472951.1	-	103882744,103889071,103892129,103897547,103898876,103899959	103882841,103889144,103892252,103897719,103899000,103900153	0.714286
testis_male_adult_54_years	chr22	35241950	35241960	35241959	-	High_confidence	25	27	46	1.708073	4.558206	chr22	35241003	35241950	LINE|L1|L1PBa1	-	chr22	35232636	35242030	STRG.356013.1	-	35232636,35241765	35232891,35242030	0.891304
testis_male_adult_54_years	chr14	97662689	97662712	97662702	-	High_confidence	12	14	47	1.745205	4.986189	chr14	97662631	97662995	LINE|L2|L2a	+	chr14	97661521	97662701	STRG.288545.1	-	97661521,97662418	97661825,97662701	0.765957
testis_male_adult_54_years	chr15	40488034	40488037	40488034	+	High_confidence	5	5	14	0.519848	3.546594	chr15	40488047	40488576	LINE|L1|L1M3f	+	chr15	40488040	40558019	AC091045.1|ENST00000561460.5	+	40488040,40508331,40552842,40556953	40488207,40508444,40553773,40558019	0.642857
testis_male_adult_54_years	chr12	56171906	56171926	56171925	-	RAMPAGE_only	5	5	11	0.408452	3.277613	chr12	56171922	56171983	DNA|hAT-Ac|OldhAT1	+	chr12	56163344	56189473	SMARCC2|ENST00000552674.5	-	56163344,56164647,56165317,56168059,56169528,56169775,56170143,56171270,56171678,56172427,56172584,56172936,56173695,56174650,56178021,56178403,56178809,56178996,56180976,56181481,56181703,56182003,56183860,56184174,56184843,56185029,56186154,56187186,56189350	56163765,56164731,56165699,56168194,56169695,56169911,56170208,56171432,56171937,56172490,56172704,56173029,56173849,56174764,56178093,56178534,56178847,56179056,56181101,56181597,56181835,56182079,56183930,56184244,56184936,56185092,56186240,56187306,56189473	1.000000
testis_male_adult_54_years	chr3	36453343	36453358	36453357	-	High_confidence	18	19	56	2.079393	5.163178	chr3	36453160	36454551	LTR|ERV1|LTR12C	+	chr3	36446918	36453348	STRG.65795.1	-	36446918,36453154	36447262,36453348	0.625000
testis_male_adult_54_years	chr17	16778110	16778147	16778146	+	RAMPAGE_only	3	3	17	0.631244	3.202820	chr17	16776807	16778368	LINE|L1|L1PB1	+	chr17	16720516	16796204	STRG.314649.6	+	16720516,16727526,16731799,16734689,16737537,16761424,16762312,16763964,16771976,16773496,16786947,16796042	16720658,16727740,16732666,16735643,16737675,16761718,16762533,16764175,16772019,16784480,16788135,16796204	0.941176
testis_male_adult_54_years	chr4	40762582	40762625	40762602	+	High_confidence	9	9	25	0.928300	4.229871	chr4	40762633	40763045	DNA|hAT-Charlie|MER1B	+	chr4	40762605	40776188	NSUN7|ENST00000463952.5	+	40762605,40773055,40774264,40774766,40776048	40762708,40773238,40774417,40774950,40776188	0.800000
testis_male_adult_54_years	chr6	4844312	4844351	4844332	+	RAMPAGE_only	32	51	184	6.832290	5.555413	chr6	4842264	4844381	LINE|L1|L1PB1	-	chr6	4842334	4892112	STRG.135147.9	+	4842334,4891712	4844503,4892112	0.853261
testis_male_adult_54_years	chr14	60245340	60245359	60245358	-	High_confidence	10	10	22	0.816904	4.121928	chr14	60245118	60245452	LINE|L2|L2a	+	chr14	60240120	60245653	AL157756.1|ENST00000532515.1	-	60240120,60245544	60242870,60245653	0.590909
testis_male_adult_54_years	chr6	36879430	36879437	36879430	+	RAMPAGE_only	162	164	247	9.171607	6.777564	chr6	36879127	36880078	LTR|ERV1|PABL_A-int	+	chr6	36885853	36928964	C6orf89|ENST00000480824.6	+	36885853,36894503,36899425,36902220,36914283,36914553,36916444,36919577,36923346	36886028,36894603,36899633,36902434,36914435,36914693,36916574,36919701,36928964	0.663968
testis_male_adult_54_years	chr6	64506796	64506825	64506824	-	RAMPAGE_only	4	4	10	0.371320	2.921928	chr6	64506630	64506925	SINE|Alu|AluY	+	chr6	64477382	64477777	STRG.143452.1	-	64477382	64477777	0.500000
testis_male_adult_54_years	chr19	15899972	15899973	15899972	-	RAMPAGE_only	5	5	8	0.297056	2.521641	chr19	15899614	15900620	LTR|ERV1|LTR12C	+	chr19	15878022	15898120	CYP4F2|ENST00000221700.10	-	15878022,15879345,15879603,15879763,15885923,15886241,15889422,15890311,15892308,15892528,15895505,15897413,15898025	15878936,15879428,15879668,15879897,15886053,15886308,15889693,15890433,15892436,15892582,15895650,15897612,15898120	0.625000
testis_male_adult_54_years	chr6	17015558	17015559	17015558	-	High_confidence	129	130	130	4.827161	4.829966	chr6	17015186	17016323	LTR|ERV1|LTR12D	-	chr6	17014748	17015548	STRG.136957.2	-	17014748	17015548	0.900000
testis_male_adult_54_years	chr4	123539025	123539027	123539026	+	High_confidence	122	249	267	9.914247	5.499329	chr4	123537735	123539444	LTR|ERV1|LTR12C	+	chr4	123539008	123540238	STRG.102078.1	+	123539008	123540238	0.981273
testis_male_adult_54_years	chr1	16407035	16407038	16407037	-	RAMPAGE_only	9	12	15	0.556980	3.664498	chr1	16406991	16407092	SINE|MIR|MIR1_Amn	+	chr1	16387116	16403974	SPATA21|ENST00000491418.5	-	16387116,16399343,16400719,16403726,16403967	16387301,16399521,16400892,16403844,16403974	0.666667
testis_male_adult_54_years	chr16	72073244	72073245	72073244	+	RAMPAGE_only	8	9	10	0.371320	2.646439	chr16	72072861	72073376	LTR|ERV1|LTR10B	+	chr16	72063228	72077246	HPR|ENST00000561690.1	+	72063228,72073891,72074283,72075144,72076302,72076955	72063260,72073977,72074385,72075219,72076350,72077246	0.700000
testis_male_adult_54_years	chr1	79324995	79325008	79324995	+	RAMPAGE_only	57	75	152	5.644066	6.475834	chr1	79324743	79325260	LTR|ERV1|LTR8A	-	chr1	79345084	79346775	STRG.10597.1	+	79345084	79346775	0.559211
testis_male_adult_54_years	chr5	115296060	115296096	115296095	-	High_confidence	5	5	12	0.445584	3.095795	chr5	115296013	115296236	SINE|MIR|MIRb	-	chr5	115267354	115296065	CCDC112|ENST00000512261.5	-	115267354,115268881,115269702,115271212,115275215,115275993,115276964,115279646,115280351,115284786,115295909	115267918,115269000,115269798,115271626,115275606,115276069,115277054,115279768,115280480,115284908,115296065	0.916667
testis_male_adult_54_years	chr17	20409122	20409124	20409122	+	RAMPAGE_only	4	7	8	0.297056	2.521641	chr17	20407297	20409832	LINE|L1|L1PB1	+	chr17	20321163	20431008	STRG.315238.23	+	20321163,20324182,20335831,20339479,20342357,20350937,20351256,20357878,20362183,20362921,20365085,20367612,20391474,20392363,20394020,20400520,20402055,20420378,20424591,20426790,20428511,20429608,20430837	20321660,20324253,20336080,20340319,20342494,20350971,20351398,20358096,20362367,20363050,20366030,20367750,20391768,20392584,20394230,20400563,20416691,20420605,20424783,20427079,20428937,20429701,20431008	0.875000
testis_male_adult_54_years	chr6	146770455	146770481	146770470	+	High_confidence	184	192	441	16.375217	7.434766	chr6	146770491	146770584	LINE|L2|L2c	+	chr6	146770438	146801254	ADGB|ENST00000326916.12	+	146770438,146782019,146784617,146785609,146788388,146801182	146770609,146782192,146784794,146785712,146788610,146801254	0.836735
testis_male_adult_54_years	chr12	50473533	50473534	50473533	+	RAMPAGE_only	6	6	6	0.222792	2.584963	chr12	50473583	50473802	SINE|Alu|AluSx	+	chr12	50440438	50476456	LARP4|ENST00000520064.2	+	50440438,50441589,50453459,50454313,50461134,50462581,50466958,50473414,50473998,50475525	50440549,50441643,50453672,50454417,50461347,50462630,50467120,50473536,50474107,50476456	1.000000
testis_male_adult_54_years	chr11	134287085	134287103	134287102	+	High_confidence	47	50	136	5.049954	6.277618	chr11	134286878	134287175	SINE|Alu|AluY	+	chr11	134287116	134319558	STRG.245516.3	+	134287116,134288797,134292131,134307123,134309625,134312815,134313940,134314329,134318630,134318876	134287327,134288890,134293209,134307208,134312489,134312887,134314028,134314441,134318747,134319558	0.816176
testis_male_adult_54_years	chr19	58025591	58025592	58025591	-	High_confidence	154	154	168	6.238178	6.055485	chr19	58025302	58025867	LTR|ERV1|LTR12_	-	chr19	58012037	58025580	STRG.340246.42	-	58012037,58025128	58013426,58025580	0.660714
testis_male_adult_54_years	chr18	76626683	76626694	76626683	+	High_confidence	3	3	11	0.408452	3.321928	chr18	76626697	76626807	LTR|ERVL-MaLR|MLT1C	+	chr18	76626705	76628334	STRG.330316.1	+	76626705	76628334	0.727273
testis_male_adult_54_years	chr12	114621559	114621569	114621568	+	High_confidence	65	65	118	4.381577	5.810918	chr12	114621329	114621889	LTR|ERVL-MaLR|MLT1G1	+	chr12	114621581	114622900	STRG.261432.1	+	114621581,114622803	114622011,114622900	0.822034
testis_male_adult_54_years	chr4	58565184	58565202	58565201	-	High_confidence	11	11	33	1.225356	4.696132	chr4	58564943	58565505	LTR|ERVL|MLT2B3	+	chr4	58562164	58565122	AC019133.1|ENST00000508292.1	-	58562164,58563506,58565068	58562319,58563717,58565122	0.696970
testis_male_adult_54_years	chr7	6044566	6044571	6044569	-	RAMPAGE_only	3	4	8	0.297056	2.521641	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6041152	6046437	EIF2AK1|ENST00000470168.1	-	6041152,6042932,6044561,6046070	6041219,6042993,6044661,6046437	0.625000
testis_male_adult_54_years	chr17	18860462	18860503	18860492	+	High_confidence	8	8	30	1.113960	4.548394	chr17	18860434	18860552	LINE|L2|L2a	-	chr17	18860514	18911251	PRPSAP2|ENST00000422237.5	+	18860514,18865468,18865801,18867281,18872582,18877697,18882567,18889821,18911102	18860691,18865564,18865952,18867334,18872649,18877870,18882683,18889877,18911251	0.966667
testis_male_adult_54_years	chr17	555656	555657	555656	-	RAMPAGE_only	111	119	131	4.864293	6.073205	chr17	555440	555634	SINE|Alu|AluSx	-	chr17	508667	562686	STRG.311999.6	-	508667,514056,519825,521600,532841,537027,551871,553379,560425,562502	513642,519298,519930,521738,532911,537176,551950,553462,560573,562686	0.702290
testis_male_adult_54_years	chr9	11893388	11893401	11893388	+	High_confidence	6	6	16	0.594112	4.000000	chr9	11890028	11893525	LINE|L1|L1PBa	-	chr9	11893282	12097093	STRG.197559.3	+	11893282,11927868,12096243	11893597,11927939,12097093	0.687500
testis_male_adult_54_years	chr19	28445181	28445230	28445181	+	High_confidence	8	8	39	1.448148	4.765795	chr19	28444761	28445468	LTR|ERV1|MER51A	+	chr19	28444879	28446904	STRG.333767.1	+	28444879,28445781	28445688,28446904	1.000000
testis_male_adult_54_years	chr13	77755950	77755967	77755951	+	RAMPAGE_only	3	5	9	0.334188	2.750000	chr13	77755997	77756134	SINE|MIR|MIRb	+	chr13	77743104	77764227	SLAIN1|ENST00000358679.3	+	77743104,77744282,77746513,77753202,77760827,77763144	77743165,77744432,77746855,77753358,77761110,77764227	0.666667
testis_male_adult_54_years	chr6	73142115	73142126	73142115	-	High_confidence	197	200	293	10.879679	5.768235	chr6	73141823	73142311	LTR|ERVL-MaLR|MLT1F	-	chr6	73132027	73142538	STRG.143851.3	-	73132027,73136093,73136632,73140803,73141888	73132383,73136159,73136760,73140957,73142538	0.815700
testis_male_adult_54_years	chr2	181954392	181954411	181954392	+	High_confidence	2	2	9	0.334188	2.750000	chr2	181954369	181954454	DNA|hAT-Charlie|MER119	+	chr2	181954334	182117444	STRG.52510.3	+	181954334,181975218,181987838,182061441,182063730,182117206	181954634,181975264,181987899,182061479,182063791,182117444	0.888889
testis_male_adult_54_years	chr9	68323613	68323625	68323622	+	High_confidence	4	4	10	0.371320	3.169925	chr9	68323225	68323827	LTR|ERV1|HERVE-int	-	chr9	68323606	68330626	AL353608.3|ENST00000414223.4	+	68323606,68325033,68326262,68330125	68323825,68325257,68328690,68330626	0.500000
testis_male_adult_54_years	chr19	44112210	44112230	44112210	+	RAMPAGE_only	2	2	9	0.334188	3.000000	chr19	44111864	44112444	LTR|ERV1|LTR9	-	chr19	44113357	44134816	ZNF225|ENST00000262894.10	+	44113357,44115759,44118187,44118481,44130849	44113569,44115842,44118314,44118574,44134816	0.555556
testis_male_adult_54_years	chr12	12635906	12635914	12635906	+	RAMPAGE_only	3	4	7	0.259924	2.807355	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	1.000000
testis_male_adult_54_years	chr2	159428403	159428417	159428403	-	RAMPAGE_only	5	5	11	0.408452	3.277613	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.909091
testis_male_adult_54_years	chr15	77963727	77963748	77963727	+	High_confidence	59	60	186	6.906554	5.873827	chr15	77963557	77963934	LTR|ERVL|MER77B	+	chr15	77963662	77965770	STRG.297639.1	+	77963662	77965770	0.994624
testis_male_adult_54_years	chr12	58699114	58699123	58699122	-	RAMPAGE_only	2	3	7	0.259924	2.584963	chr12	58697778	58699157	LINE|L1|L1MA4	-	chr12	58683723	58781728	STRG.254241.3	-	58683723,58756962,58768611,58781570	58712352,58765387,58768732,58781728	0.857143
testis_male_adult_54_years	chr6	85578414	85578454	85578453	+	High_confidence	30	31	113	4.195917	4.784655	chr6	85577426	85578652	LINE|L2|L2c	-	chr6	85578429	85578965	STRG.145817.1	+	85578429	85578965	0.964602
testis_male_adult_54_years	chr13	113605541	113605587	113605541	+	RAMPAGE_only	10	12	63	2.339317	5.711329	chr13	113605404	113605711	LTR|ERVL-MaLR|MLT1F	-	chr13	113585332	113640684	STRG.276916.2	+	113585332,113585773,113610995,113623179,113631622,113633119,113633889,113634533,113635976,113636533,113637817,113640119	113585427,113585849,113611062,113623286,113631744,113633285,113634033,113634602,113636128,113636700,113637896,113640684	0.587302
testis_male_adult_54_years	chr2	218560820	218560832	218560820	-	RAMPAGE_only	2	3	6	0.222792	2.584963	chr2	218560567	218560864	DNA|hAT-Charlie|MER102a	-	chr2	218454814	218568291	USP37|ENST00000418019.5	-	218454814,218455579,218457091,218459789,218463305,218466009,218474629,218476839,218479649,218482069,218485663,218488303,218495759,218497733,218498025,218509978,218529955,218534608,218546220,218546918,218549808,218553552,218558497,218560819,218562717,218568177	218455017,218455718,218457161,218459905,218463366,218466176,218474885,218476981,218479715,218482234,218485743,218488421,218495950,218497857,218498157,218510140,218530040,218534706,218546298,218547091,218549909,218553724,218558677,218560883,218562813,218568291	0.833333
testis_male_adult_54_years	chr6	155514859	155514860	155514859	+	High_confidence	8	8	9	0.334188	2.750000	chr6	155514562	155514979	LTR|ERV1|MER101	-	chr6	155514843	155526018	LOC105378068|NR_134597.1	+	155514843,155515247,155525637	155514948,155515294,155526018	0.888889
testis_male_adult_54_years	chr19	52891327	52891328	52891327	-	High_confidence	4	4	7	0.259924	2.521641	chr19	52891172	52891371	SINE|Alu|AluSz	+	chr19	52876171	52891346	ZNF320|NM_207333.2	-	52876171,52888126,52890240,52891228	52881983,52888253,52890328,52891346	1.000000
testis_male_adult_54_years	chr8	26854778	26854804	26854800	+	High_confidence	18	19	48	1.782337	4.475247	chr8	26854799	26855121	LTR|ERVL-MaLR|MLT1A0	+	chr8	26854786	26858999	STRG.181744.1	+	26854786,26858353,26858692	26854982,26858435,26858999	0.791667
testis_male_adult_54_years	chr13	108886088	108886115	108886088	+	High_confidence	5	5	19	0.705508	3.721612	chr13	108885987	108886286	SINE|Alu|AluY	-	chr13	108886098	109127685	STRG.275927.2	+	108886098,108888371,108898015,108910002,108957687,108961538,108962423,108964760,108992375,109008896,109019710,109046915,109052299,109055045,109055389,109100784,109120369,109125111,109127281	108886747,108888477,108898133,108910150,108957799,108961656,108962495,108964902,108992448,109009049,109019911,109046991,109052475,109055126,109055595,109100887,109120466,109125358,109127685	1.000000
testis_male_adult_54_years	chr20	18794054	18794086	18794077	+	High_confidence	116	116	302	11.213867	6.604243	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794067	18796061	STRG.342558.1	+	18794067,18794530	18794106,18796061	0.735099
testis_male_adult_54_years	chr16	2664393	2664438	2664416	+	High_confidence	4	4	18	0.668376	3.690117	chr16	2661287	2668373	LTR|ERVK|HERVK13-int	-	chr16	2664645	2664968	STRG.301685.1	+	2664645	2664968	0.722222
testis_male_adult_54_years	chr5	100401428	100401436	100401428	+	High_confidence	5	5	12	0.445584	3.584963	chr5	100401295	100401560	LTR|ERVL|ERV3-16A3_I-int	-	chr5	100401440	100408899	AC113385.1|ENST00000511468.1	+	100401440,100407254,100408798	100401783,100407373,100408899	0.833333
testis_male_adult_54_years	chrY	3002985	3002990	3002989	+	High_confidence	11	12	27	1.002564	4.133661	chrY	3002992	3005218	LTR|ERV1|HERV3-int	+	chrY	3002995	3102272	LINC00278|NR_046502.1	+	3002995,3079283,3096994,3102084	3003217,3079341,3097056,3102272	0.592593
testis_male_adult_54_years	chr1	89128119	89128152	89128151	+	RAMPAGE_only	4	4	12	0.445584	3.277613	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89148587	89179600	STRG.12030.1	+	89148587,89149331,89179318	89148680,89149546,89179600	0.500000
testis_male_adult_54_years	chr17	19282000	19282034	19282000	+	High_confidence	2	2	11	0.408452	3.277613	chr17	19281937	19282036	LINE|L2|L2a	-	chr17	19281954	19313734	EPN2|ENST00000495155.5	+	19281954,19282949,19309884,19312051,19313104	19282077,19283714,19309997,19312144,19313734	1.000000
testis_male_adult_54_years	chr8	105387658	105387696	105387695	+	High_confidence	13	16	51	1.893733	5.213661	chr8	105386387	105387853	LTR|ERV1|LTR12C	-	chr8	105387145	105789027	ZFPM2|ENST00000511341.6	+	105387145,105419143,105444279,105561362,105634245,105788717	105387925,105419302,105444381,105561481,105634357,105789027	0.901961
testis_male_adult_54_years	chr13	50329621	50329622	50329621	+	RAMPAGE_only	16	17	20	0.742640	4.142664	chr13	50329415	50329794	LTR|ERVL-MaLR|THE1D	+	chr13	50390197	50648642	DLEU1|ENST00000479420.5	+	50390197,50415088,50433412,50492650,50589474,50648589	50390291,50415202,50433550,50492761,50589576,50648642	0.500000
testis_male_adult_54_years	chr1	173758348	173758376	173758366	+	RAMPAGE_only	22	22	55	2.042261	5.403998	chr1	173758360	173764856	LINE|L1|L1PB1	+	chr1	173637721	173765009	STRG.19894.2	+	173637721,173671233,173716002,173733712,173751763,173753212,173755922,173756975	173638034,173671334,173716066,173734286,173751922,173753307,173756038,173765009	0.690909
testis_male_adult_54_years	chr3	150323740	150323750	150323749	-	High_confidence	18	18	44	1.633808	5.193707	chr3	150322785	150323774	LTR|ERV1|LTR12C	+	chr3	150265406	150323747	LINC01214|NR_110186.1	-	150265406,150266726,150296467,150323710	150265659,150266783,150296604,150323747	0.590909
testis_male_adult_54_years	chr6	73141169	73141181	73141169	-	RAMPAGE_only	11	11	25	0.928300	4.023465	chr6	73141040	73141369	LTR|ERVL-MaLR|MLT1A0	-	chr6	73132027	73142538	STRG.143851.3	-	73132027,73136093,73136632,73140803,73141888	73132383,73136159,73136760,73140957,73142538	0.880000
testis_male_adult_54_years	chr16	4669251	4669252	4669251	+	High_confidence	7	7	8	0.297056	2.521641	chr16	4669151	4669448	SINE|Alu|AluSz	+	chr16	4669120	4681580	MGRN1|ENST00000591673.1	+	4669120,4671390,4673497,4677462,4680031,4681549	4669252,4671459,4673657,4677572,4680097,4681580	0.625000
testis_male_adult_54_years	chr14	72422118	72422131	72422129	+	RAMPAGE_only	109	150	251	9.320135	7.108991	chr14	72421935	72422277	LTR|ERVL-MaLR|THE1B	+	chr14	72421007	72562467	STRG.285384.6	+	72421007,72421587,72454527,72458270,72459631,72465757,72470006,72472871,72474624,72476741,72478267,72495151,72510153,72518350,72536185,72540040,72562416	72421185,72421724,72454578,72458377,72459683,72465822,72470083,72472953,72474699,72476840,72478329,72495262,72510279,72518537,72536275,72540094,72562467	0.661355
testis_male_adult_54_years	chr15	23873632	23873667	23873666	+	High_confidence	18	18	40	1.485280	4.012815	chr15	23873341	23874096	LTR|ERV1|LTR12	+	chr15	23873632	23874822	STRG.291082.1	+	23873632	23874822	1.000000
testis_male_adult_54_years	chr6	41104135	41104152	41104135	+	RAMPAGE_only	3	3	7	0.259924	2.521641	chr6	41103880	41104928	LINE|L2|L2a	-	chr6	41101033	41140835	ADCY10P1|NR_026938.2	+	41101033,41102009,41105109,41108304,41108948,41111222,41117297,41117475,41118128,41118923,41119240,41120522,41121345,41121785,41122976,41124484,41127544,41132293,41135184,41137356,41138608,41139855,41140597	41101178,41102114,41105148,41108509,41109904,41111356,41117382,41117665,41118184,41119107,41119463,41120657,41121474,41121943,41123249,41124820,41127608,41132513,41135341,41137561,41138726,41140069,41140835	0.571429
testis_male_adult_54_years	chr6	26482514	26482541	26482514	-	High_confidence	43	43	211	7.834854	6.810070	chr6	26482449	26482577	DNA|hAT-Charlie|Charlie1	+	chr6	26471943	26482509	LOC285819|NR_038992.1	-	26471943,26476151,26477834,26482471	26472193,26477481,26479120,26482509	0.947867
testis_male_adult_54_years	chr2	162353626	162353648	162353626	+	RAMPAGE_only	6	6	32	1.188224	4.937500	chr2	162353483	162354861	LINE|L1|HAL1	-	chr2	162356437	162371595	GCA|ENST00000414723.1	+	162356437,162356757,162359043,162359493,162371305	162356481,162356905,162359157,162359552,162371595	0.812500
testis_male_adult_54_years	chr6	42361920	42361963	42361920	-	RAMPAGE_only	9	9	20	0.742640	3.921928	chr6	42361743	42362206	LTR|ERVL|LTR33	+	chr6	42228148	42451261	STRG.141494.6	-	42228148,42232680,42236204,42243247,42246455,42254850,42256727,42256962,42258134,42259338,42263319,42264703,42265750,42268153,42300637,42345408,42451176	42228669,42232892,42236411,42243361,42246544,42254926,42256831,42257102,42258201,42259723,42263568,42264854,42265797,42269848,42300749,42363079,42451261	1.000000
testis_male_adult_54_years	chr6	6745262	6745263	6745262	-	High_confidence	90	91	103	3.824597	5.569774	chr6	6744950	6746228	LTR|ERV1|LTR12E	-	chr6	6742586	6745291	STRG.135279.2	-	6742586	6745291	0.912621
testis_male_adult_54_years	chrX	107245042	107245100	107245044	-	High_confidence	193	260	1036	38.468763	6.662985	chrX	107244866	107245402	DNA|MULE-MuDR|Ricksha_c	-	chrX	107069309	107245918	STRG.367198.3	-	107069309,107088435,107113396,107115351,107115861,107116649,107118765,107147742,107150855,107153171,107153453,107154095,107167648,107175088,107244958	107069402,107088839,107113468,107115556,107116054,107116766,107124332,107147809,107150967,107153306,107153503,107154246,107167784,107175193,107245918	0.925676
testis_male_adult_54_years	chr12	8567589	8567600	8567589	-	RAMPAGE_only	14	14	26	0.965432	4.293661	chr12	8567561	8568746	LTR|ERV1|MER52C	-	chr12	8533304	8540963	CLEC4E|ENST00000299663.7	-	8533304,8536089,8537114,8539216,8539854,8540760	8534809,8536205,8537266,8539306,8539947,8540963	0.730769
testis_male_adult_54_years	chr1	147517753	147517786	147517785	-	High_confidence	2	3	7	0.259924	2.584963	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147513625	147517875	STRG.16179.6	-	147513625,147515520	147514448,147517875	0.857143
testis_male_adult_54_years	chr16	2204624	2204649	2204624	+	High_confidence	6	7	19	0.705508	4.058814	chr16	2204526	2204705	LINE|L2|L2	-	chr16	2205176	2209417	MLST8|NM_001199175.1	+	2205176,2206030,2206360,2206496,2207034,2207192,2208209,2208449,2208758	2205512,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209417	0.526316
testis_male_adult_54_years	chrX	134839298	134839316	134839298	+	RAMPAGE_only	1	1	7	0.259924	2.584963	chrX	134838660	134840373	Retroposon|SVA|SVA_D	+	chrX	134835094	134854562	FAM122C|ENST00000645256.1	+	134835094,134838726,134845204,134845346,134847382,134852799,134854090	134835796,134839603,134845248,134845401,134847475,134852896,134854562	0.714286
testis_male_adult_54_years	chr13	48379620	48379639	48379638	+	RAMPAGE_only	2	2	6	0.222792	2.584963	chr13	48379680	48379983	SINE|Alu|AluSc	+	chr13	48444827	48456307	RB1|ENST00000480491.1	+	48444827,48452992,48456203	48445221,48453111,48456307	0.500000
testis_male_adult_54_years	chr2	240672006	240672036	240672035	-	High_confidence	7	7	15	0.556980	3.773557	chr2	240671344	240672095	LTR|ERVK|LTR5A	+	chr2	240671601	240672049	STRG.60173.1	-	240671601	240672049	0.533333
testis_male_adult_54_years	chr9	6622863	6622901	6622888	-	High_confidence	4	4	10	0.371320	3.321928	chr9	6622239	6623631	Retroposon|SVA|SVA_D	+	chr9	6595027	6623002	STRG.196731.3	-	6595027,6602108,6604587,6605130,6606591,6610191,6620183,6622784	6595119,6602205,6604784,6605278,6606669,6610356,6620319,6623002	1.000000
testis_male_adult_54_years	chr2	38431100	38431151	38431150	-	High_confidence	3	3	12	0.445584	3.277613	chr2	38431073	38431155	DNA|hAT-Tip100|MER96	+	chr2	38406727	38431720	STRG.34619.3	-	38406727,38430575	38406989,38431720	0.833333
testis_male_adult_54_years	chr7	116286707	116286740	116286707	-	High_confidence	35	37	117	4.344445	6.325284	chr7	116286478	116286828	LINE|L1|HAL1b	-	chr7	116275605	116286727	LOC102724434|NR_130922.1	-	116275605,116284367,116286111,116286698	116277432,116284406,116286195,116286727	0.555556
testis_male_adult_54_years	chr10	27981870	27981904	27981870	-	High_confidence	239	265	644	23.913015	6.994313	chr10	27981797	27981857	LINE|L2|L2b	-	chr10	27944822	27981904	ARMC4|ENST00000480504.1	-	27944822,27961567,27968922,27971107,27981465,27981828	27944962,27961715,27969018,27971313,27981582,27981904	0.927019
testis_male_adult_54_years	chr12	55035714	55035743	55035718	-	High_confidence	33	34	67	2.487845	5.440238	chr12	55035324	55035735	LINE|L2|L2b	+	chr12	55023494	55035786	STRG.253648.1	-	55023494,55026089,55029212,55034669,55035419	55024255,55026118,55029320,55034792,55035786	0.880597
testis_male_adult_54_years	chr4	187814822	187814832	187814831	+	High_confidence	7	12	27	1.002564	4.606739	chr4	187814585	187815260	LTR|ERV1|MER50	+	chr4	187814801	187815927	STRG.110497.1	+	187814801	187815927	0.740741
testis_male_adult_54_years	chr15	76797567	76797589	76797567	-	RAMPAGE_only	3	3	10	0.371320	3.121928	chr15	76797305	76798069	LINE|L1|L1M4	+	chr15	76348184	76861944	SCAPER|NM_001145923.1	-	76348184,76351236,76353948,76376161,76381377,76404523,76434077,76471211,76504858,76574157,76621763,76665652,76701757,76702849,76705902,76728594,76733228,76753807,76764960,76765336,76765562,76766917,76771741,76774854,76793232,76795279,76800247,76804532,76841733,76855809,76857808,76861844	76348736,76351288,76354140,76376311,76381615,76404679,76434310,76471335,76504974,76574284,76621829,76665789,76701865,76703002,76705984,76728737,76733384,76753948,76765072,76765454,76765638,76767088,76771954,76775117,76793391,76795440,76800364,76804633,76841931,76855876,76857879,76861944	1.000000
testis_male_adult_54_years	chr13	48444780	48444786	48444780	+	High_confidence	7	7	14	0.519848	3.180833	chr13	48444740	48444914	LTR|ERVL|MER21A	-	chr13	48444827	48456307	RB1|ENST00000480491.1	+	48444827,48452992,48456203	48445221,48453111,48456307	0.500000
testis_male_adult_54_years	chr9	18803455	18803456	18803455	-	High_confidence	36	36	48	1.782337	4.985412	chr9	18803053	18803559	LTR|ERVL-MaLR|MLT1E3	-	chr9	18802622	18803491	STRG.198332.2	-	18802622	18803491	0.916667
testis_male_adult_54_years	chr9	33262162	33262226	33262203	-	RAMPAGE_only	5	5	23	0.854036	3.975418	chr9	33262201	33262256	LINE|L2|L2a	+	chr9	33257719	33261119	BAG1|ENST00000473464.2	-	33257719,33258919,33261086	33258123,33259033,33261119	0.739130
testis_male_adult_54_years	chr1	223973373	223973394	223973393	-	RAMPAGE_only	2	2	7	0.259924	2.521641	chr1	223973361	223973556	SINE|MIR|MIRb	+	chr1	223942426	223992658	STRG.25761.2	-	223942426,223952384,223961167,223962076,223962610,223964585,223976879,223982757,223984381,223986574,223988044,223992239	223952291,223954667,223961232,223962273,223962708,223974046,223977115,223983285,223984440,223986640,223988154,223992658	1.000000
testis_male_adult_54_years	chr10	97070079	97070091	97070081	-	High_confidence	4	6	11	0.408452	3.121928	chr10	97069764	97070286	LTR|ERVL-MaLR|MLT1F1	+	chr10	97065467	97070210	STRG.223944.1	-	97065467,97066014,97069280,97069867	97065659,97066086,97069527,97070210	0.545455
testis_male_adult_54_years	chr22	41261447	41261556	41261447	-	RAMPAGE_only	19	22	98	3.638937	5.713181	chr22	41261251	41261408	SINE|MIR|MIRc	-	chr22	41245614	41282514	RANGAP1|ENST00000455915.6	-	41245614,41249329,41249728,41251006,41252871,41254307,41256020,41256190,41256710,41257947,41261445,41264663,41268096,41274599,41280932	41246672,41249451,41249817,41251109,41252991,41254494,41256105,41256290,41256824,41258106,41261580,41264843,41268156,41274727,41282514	0.969388
testis_male_adult_54_years	chr4	37001784	37001812	37001805	+	High_confidence	29	38	87	3.230485	5.933654	chr4	37001705	37002035	LTR|ERV1|MER48	+	chr4	37001815	37020708	AL136537.2|ENST00000562049.1	+	37001815,37018317	37001895,37020708	0.724138
testis_male_adult_54_years	chr7	123925856	123925908	123925856	+	High_confidence	7	7	22	0.816904	4.368523	chr7	123925759	123925994	LTR|ERV1|MER34-int	-	chr7	123925854	123960046	SPAM1|ENST00000439500.5	+	123925854,123947703,123949871,123953364,123954996,123959483	123926064,123947788,123949983,123954524,123955086,123960046	0.727273
testis_male_adult_54_years	chr7	154928492	154928515	154928503	+	High_confidence	21	23	45	1.670940	5.106937	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.844444
testis_male_adult_54_years	chr6	79631254	79631329	79631302	+	High_confidence	14	14	71	2.636373	5.401586	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.971831
testis_male_adult_54_years	chr19	13672683	13672753	13672744	-	High_confidence	12	12	50	1.856601	5.119513	chr19	13672633	13672814	LTR|ERVL-MaLR|MLT1J	+	chr19	13670886	13672806	STRG.332711.1	-	13670886,13672588	13671699,13672806	0.640000
testis_male_adult_54_years	chr10	69537568	69537569	69537568	-	RAMPAGE_only	59	60	76	2.822033	4.713093	chr10	69537416	69537769	LTR|ERVL-MaLR|MLT1C	-	chr10	69536404	69539132	STRG.220919.1	-	69536404,69537456,69537930,69538855	69536724,69537590,69538688,69539132	0.710526
testis_male_adult_54_years	chr11	123796376	123796383	123796376	+	High_confidence	4	4	9	0.334188	3.000000	chr11	123795977	123796536	LTR|ERV1|MER51A	-	chr11	123796713	123891555	STRG.244120.8	+	123796713,123797788,123816990,123888832	123797665,123797992,123817128,123891555	0.666667
testis_male_adult_54_years	chr12	121375374	121375425	121375424	+	High_confidence	71	72	182	6.758026	5.753562	chr12	121374282	121375813	LTR|ERV1|LTR12C	+	chr12	121375376	121379803	STRG.262533.2	+	121375376	121379803	0.956044
testis_male_adult_54_years	chr4	67286097	67286139	67286134	-	High_confidence	7	13	24	0.891168	4.334963	chr4	67285663	67287251	LTR|ERV1|LTR12C	-	chr4	67285531	67285956	STRG.95616.1	-	67285531	67285956	0.916667
testis_male_adult_54_years	chr20	63116213	63116227	63116213	+	High_confidence	17	17	32	1.188224	4.615061	chr20	63116246	63116341	LINE|L2|L2a	+	chr20	63116343	63118171	STRG.347688.1	+	63116343,63116841	63116485,63118171	0.906250
testis_male_adult_54_years	chr16	21152572	21152580	21152579	-	High_confidence	3	3	7	0.259924	2.584963	chr16	21152413	21153830	LTR|ERV1|LTR12C	+	chr16	20944205	21153132	STRG.305049.1	-	20944205,20948482,20952432,20954812,20959178,20963283,20969791,20975232,20979329,20982720,20985048,20987304,20987692,20987941,20997282,21000223,21003103,21019623,21021970,21024595,21027026,21031044,21033973,21036713,21037760,21039851,21042026,21049568,21049909,21051669,21054419,21058085,21060263,21062481,21067282,21069414,21070709,21075446,21081635,21086848,21097354,21098615,21104470,21106489,21111625,21111992,21117202,21121944,21125174,21127686,21134258,21136323,21140535,21141299,21145180,21145983,21150289,21152365	20944663,20948637,20952549,20955057,20959404,20965425,20969990,20975415,20979546,20982886,20985715,20987448,20987849,20988065,20997462,21000518,21003207,21019869,21022100,21024701,21027127,21031286,21034085,21036848,21037980,21039943,21042203,21049682,21050018,21051868,21054534,21058196,21060356,21062683,21067419,21069594,21070826,21075561,21081727,21087060,21097499,21098769,21104594,21106674,21111804,21112098,21117339,21122124,21125370,21127812,21134454,21136513,21140710,21141372,21145406,21146088,21150534,21153132	0.714286
testis_male_adult_54_years	chr7	150036613	150036629	150036613	+	RAMPAGE_only	11	12	33	1.225356	4.741364	chr7	150036214	150036820	LTR|ERV1|HERVE-int	-	chr7	150034265	150045092	STRG.177026.5	+	150034265,150037816,150039104,150044749	150037735,150038713,150043239,150045092	1.000000
testis_male_adult_54_years	chr4	4575808	4575819	4575808	-	RAMPAGE_only	10	10	31	1.151092	4.748394	chr4	4575763	4575859	SINE|MIR|MIR	-	chr4	4560529	4582926	STRG.88149.1	-	4560529,4562711,4568818,4582856	4560879,4562760,4568946,4582926	0.548387
testis_male_adult_54_years	chr1	194358026	194358028	194358027	-	High_confidence	145	237	292	10.842547	5.734045	chr1	194357642	194358834	LTR|ERV1|LTR12C	-	chr1	194159279	194358012	STRG.22076.2	-	194159279,194167494,194354304,194357642	194159316,194167715,194354418,194358012	0.825342
testis_male_adult_54_years	chr1	62194445	62194485	62194463	+	High_confidence	4	4	14	0.519848	3.546594	chr1	62194197	62194528	LINE|L2|L2a	-	chr1	62194801	62212328	L1TD1|NM_001164835.1	+	62194801,62196434,62203446,62206518,62209782	62194921,62196528,62203557,62207636,62212328	0.571429
testis_male_adult_54_years	chr19	3062922	3062939	3062922	-	High_confidence	7	8	12	0.445584	2.913977	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.916667
testis_male_adult_54_years	chr9	107818679	107818680	107818679	+	High_confidence	205	205	230	8.540363	5.345009	chr9	107817611	107818993	LTR|ERV1|LTR12C	+	chr9	107818669	107999976	STRG.208353.1	+	107818669,107842745,107951191,107999543	107819396,107842784,107951266,107999976	0.947826
testis_male_adult_54_years	chr14	50311389	50311454	50311400	-	High_confidence	7	7	36	1.336752	4.734522	chr14	50311205	50311437	LINE|L2|L2	+	chr14	50283852	50312154	L2HGDH|ENST00000555610.1	-	50283852,50293204,50294114,50302016,50302901,50312010	50284033,50293283,50294246,50302168,50303017,50312154	0.527778
testis_male_adult_54_years	chr15	23757102	23757106	23757102	+	High_confidence	190	191	348	12.921940	6.970756	chr15	23756843	23757427	LTR|ERV1|LTR12_	+	chr15	23757117	23828090	STRG.291051.1	+	23757117,23824723	23757573,23828090	0.879310
testis_male_adult_54_years	chr15	51936175	51936208	51936202	-	High_confidence	93	95	445	16.523745	4.407091	chr15	51935784	51936413	LTR|ERVL|LTR50	-	chr15	51928911	51936367	STRG.294642.1	-	51928911,51930528,51936033	51929478,51930623,51936367	0.678652
testis_male_adult_54_years	chr4	141208089	141208140	141208139	+	High_confidence	9	11	54	2.005129	4.254229	chr4	141207868	141208278	LTR|ERVL|LTR33B	-	chr4	141207658	141212481	STRG.104446.1	+	141207658,141212056	141208986,141212481	0.962963
testis_male_adult_54_years	chr1	178499588	178499634	178499633	-	RAMPAGE_only	11	12	33	1.225356	4.453881	chr1	178499299	178499699	LTR|ERVL|MLT2A2	+	chr1	178492389	178497184	STRG.20059.1	-	178492389,178493470,178494453,178496899,178497113	178492566,178493762,178494810,178497009,178497184	0.575758
testis_male_adult_54_years	chr13	102367496	102367516	102367496	+	High_confidence	13	13	51	1.893733	4.821468	chr13	102367044	102367593	LTR|ERVL-MaLR|MLT1F	-	chr13	102367529	102373666	FGF14-AS1|NR_125912.1	+	102367529,102373423	102367641,102373666	0.509804
testis_male_adult_54_years	chr12	114241919	114241947	114241919	-	High_confidence	7	7	18	0.668376	3.852169	chr12	114241815	114242066	LTR|ERVL-MaLR|MLT1K	+	chr12	114238186	114241981	STRG.261428.1	-	114238186,114240326,114241727	114239400,114240625,114241981	0.944444
testis_male_adult_54_years	chr6	111387771	111387824	111387771	-	RAMPAGE_only	4	5	19	0.705508	3.794653	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111343949	111397992	STRG.149499.6	-	111343949,111349217,111351675,111357013,111358821,111363852,111364943,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875	111344043,111349336,111351791,111357125,111359014,111363978,111365042,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111397992	0.736842
testis_male_adult_54_years	chr8	9002024	9002025	9002024	-	High_confidence	7	7	8	0.297056	2.807355	chr8	9001288	9002020	LTR|ERV1|LTR8	-	chr8	9000448	9002843	STRG.179519.1	-	9000448	9002843	0.750000
testis_male_adult_54_years	chr3	56939897	56939918	56939897	-	High_confidence	13	16	42	1.559544	4.907448	chr3	56939847	56940059	LTR|ERVL-MaLR|MLT1O	+	chr3	56753493	56939907	ARHGEF3|ENST00000498517.5	-	56753493,56754980,56773708,56882291,56938620,56939795	56753566,56755151,56773816,56882354,56938880,56939907	0.761905
testis_male_adult_54_years	chr5	126600248	126600249	126600248	+	High_confidence	9	9	9	0.334188	2.947703	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	1.000000
testis_male_adult_54_years	chrX	53576957	53576963	53576957	-	RAMPAGE_only	3	3	15	0.556980	3.467720	chrX	53576946	53576998	LTR|ERV1|LTR43-int	+	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.933333
testis_male_adult_54_years	chr12	68687414	68687449	68687448	+	High_confidence	37	37	93	3.453277	5.630055	chr12	68687375	68687463	SINE|MIR|MIRc	-	chr12	68687454	68742531	NUP107|ENST00000539906.5	+	68687454,68688961,68689532,68690602,68691967,68696818,68700725,68702735,68709237,68710004,68713729,68715626,68719340,68719577,68721117,68721840,68722103,68725726,68726498,68727350,68731109,68731606,68732636,68733451,68734707,68735230,68741812,68742354	68687591,68689053,68689619,68690746,68692112,68696922,68700853,68702784,68709309,68710093,68713808,68715740,68719431,68719654,68721177,68721986,68722152,68725796,68726617,68727389,68731260,68731719,68732739,68733612,68734833,68735344,68741980,68742531	0.956989
testis_male_adult_54_years	chr1	234474858	234474879	234474858	-	RAMPAGE_only	5	6	18	0.668376	4.169925	chr1	234474781	234476017	LINE|L1|L1MCc	+	chr1	234465129	234479103	STRG.27230.10	-	234465129,234467501,234471187,234472713	234465708,234467650,234471257,234479103	0.777778
testis_male_adult_54_years	chr5	12574602	12574671	12574670	-	High_confidence	8	9	50	1.856601	5.094102	chr5	12573943	12575033	LTR|ERV1|LTR12C	-	chr5	12530120	12574773	STRG.113104.3	-	12530120,12571815,12574503	12530613,12571904,12574773	0.700000
testis_male_adult_54_years	chr17	29839111	29839118	29839117	-	High_confidence	5	5	12	0.445584	3.277613	chr17	29837432	29839428	LTR|ERV1|MER52A	+	chr17	29677718	29839142	SSH2|ENST00000592397.1	-	29677718,29684562,29695458,29702958,29793893,29838926	29677741,29684684,29695523,29703062,29793937,29839142	0.833333
testis_male_adult_54_years	chr13	83517504	83517506	83517504	+	High_confidence	74	122	130	4.827161	5.560008	chr13	83516767	83517929	LTR|ERV1|LTR12D	+	chr13	83517495	83518198	STRG.272661.1	+	83517495	83518198	0.930769
testis_male_adult_54_years	chr22	25212560	25212593	25212571	+	High_confidence	18	18	49	1.819469	4.541795	chr22	25212608	25212846	LTR|ERVL|LTR16C	+	chr22	25212493	25231869	STRG.354103.2	+	25212493,25221403,25224917,25227852,25229435,25231603	25212840,25221483,25225036,25227985,25229578,25231869	0.755102
testis_male_adult_54_years	chr10	99356944	99356977	99356976	+	RAMPAGE_only	3	3	7	0.259924	2.807355	chr10	99356731	99357048	LTR|ERVL-MaLR|MLT1G	-	chr10	99329098	99394330	CNNM1|ENST00000356713.4	+	99329098,99357511,99360834,99362226,99364416,99364954,99377054,99387819,99388151,99390305,99391436	99330960,99357655,99360975,99362396,99364516,99365002,99377218,99388003,99388301,99390407,99394330	1.000000
testis_male_adult_54_years	chr20	45833500	45833520	45833500	-	High_confidence	4	4	21	0.779772	3.892407	chr20	45833401	45833509	SINE|MIR|MIRc	-	chr20	45823213	45833439	STRG.345624.2	-	45823213,45823990,45824291,45824494,45824782,45833250	45823379,45824127,45824406,45824638,45824834,45833439	0.904762
testis_male_adult_54_years	chr6	163033873	163033881	163033873	-	High_confidence	14	24	51	1.893733	5.265467	chr6	163030993	163034703	LTR|ERV1|MER41-int	-	chr6	163030349	163033890	STRG.155846.1	-	163030349,163033851	163031135,163033890	0.843137
testis_male_adult_54_years	chr11	57728263	57728280	57728263	+	RAMPAGE_only	2	2	6	0.222792	2.584963	chr11	57728169	57728366	SINE|Alu|AluY	-	chr11	57712613	57740969	TMX2|ENST00000529403.1	+	57712613,57737607,57737835,57738353,57738663,57738973,57739130,57740098	57712807,57737668,57738026,57738430,57738770,57739039,57739260,57740969	0.500000
testis_male_adult_54_years	chr17	6853863	6853929	6853886	+	High_confidence	14	14	67	2.487845	5.729926	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853860	6902192	ALOX12P2|ENST00000574727.5	+	6853860,6854213,6892002,6894317,6894883,6895095,6895342,6896315,6896553,6898528,6898799,6899390,6899592,6899867	6854060,6854435,6892075,6894513,6895006,6895199,6895503,6896459,6896763,6898698,6898929,6899490,6899760,6902192	0.671642
testis_male_adult_54_years	chr21	36005313	36005320	36005319	+	High_confidence	11	11	26	0.965432	4.243856	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.961538
testis_male_adult_54_years	chr1	150457308	150457323	150457308	+	RAMPAGE_only	2	2	8	0.297056	2.750000	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150445473	150473556	STRG.16769.9	+	150445473,150457287,150460059,150464526,150470560,150471882	150446401,150457570,150460317,150464727,150471742,150473556	1.000000
testis_male_adult_54_years	chr3	165071840	165071870	165071869	-	RAMPAGE_only	5	6	16	0.594112	3.272906	chr3	165071563	165071935	LTR|ERVL-MaLR|MLT1B	+	chr3	164978897	165078495	SI|ENST00000264382.7	-	164978897,164982242,164983001,164987137,164991352,164992176,164992312,164994256,164996534,164996737,164998539,165006815,165007910,165009278,165012979,165015122,165015951,165017547,165017760,165017969,165019601,165021228,165023569,165030711,165032521,165033394,165036388,165037899,165039077,165039886,165040939,165043058,165046840,165049126,165049790,165055193,165058962,165059167,165059901,165062370,165063441,165065260,165067339,165068721,165069077,165074530,165075894,165078432	164979430,164982410,164983051,164987226,164991477,164992233,164992397,164994405,164996651,164996772,164998673,165006954,165007998,165009395,165013042,165015233,165016080,165017673,165017873,165018066,165019770,165021383,165023776,165030867,165032692,165033444,165036477,165038024,165039134,165039971,165041094,165043175,165047012,165049244,165049875,165055307,165059082,165059299,165060027,165062483,165063541,165065432,165067491,165068831,165069195,165074667,165076012,165078495	0.687500
testis_male_adult_54_years	chr11	8658841	8658884	8658851	-	RAMPAGE_only	22	26	119	4.418709	6.373552	chr11	8658830	8658957	DNA|DNA|MER126	-	chr11	8610131	8666353	STRG.230034.4	-	8610131,8618749,8619382,8620049,8620445,8621031,8621644,8622815,8624358,8624712,8638653,8640226,8643008,8645740,8646446,8647969,8648415,8649739,8651799	8618003,8618968,8619535,8620124,8620572,8621321,8621819,8622876,8624551,8625228,8638815,8641152,8643126,8645887,8646561,8648086,8648548,8649887,8666353	0.949580
testis_male_adult_54_years	chr15	81331882	81331893	81331892	+	High_confidence	33	34	59	2.190789	5.423252	chr15	81331558	81332203	LTR|ERV1|MER50	+	chr15	81331910	81516976	TMC3-AS1|ENST00000560851.2	+	81331910,81332344,81341561,81358335,81361918,81380208,81516502	81332023,81332541,81341708,81358503,81362036,81380260,81516976	0.745763
testis_male_adult_54_years	chr16	32600342	32600365	32600342	+	RAMPAGE_only	11	11	33	1.225356	4.741364	chr16	32600358	32600416	DNA|hAT-Ac|OldhAT1	+	chr16	32605553	32614206	STRG.305526.3	+	32605553,32607527,32608193,32609875,32610410	32605714,32607684,32608224,32609946,32614206	0.575758
testis_male_adult_54_years	chr14	75847712	75847725	75847712	-	High_confidence	3	3	8	0.297056	2.807355	chr14	75847515	75847754	SINE|MIR|MIR	-	chr14	75835370	75847698	AF107885.2|ENST00000557653.1	-	75835370,75837153,75847670	75835567,75837376,75847698	0.625000
testis_male_adult_54_years	chr1	167937013	167937075	167937013	-	High_confidence	318	325	1988	73.818438	7.100742	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167918067	167937040	MPC2|ENST00000271373.8	-	167918067,167919978,167920546,167924496,167935732,167936938	167918359,167920090,167920631,167924537,167935898,167937040	0.989940
testis_male_adult_54_years	chr16	78241521	78241603	78241602	-	High_confidence	11	11	36	1.336752	4.149983	chr16	78241416	78241735	SINE|Alu|AluSz	-	chr16	78234718	78241741	STRG.310271.1	-	78234718,78237631,78238087,78241197	78234997,78237682,78238188,78241741	0.916667
testis_male_adult_54_years	chr1	40245912	40245927	40245912	+	High_confidence	5	5	10	0.371320	2.947703	chr1	40245805	40246062	LINE|L2|L2b	-	chr1	40245946	40251683	TMCO2|ENST00000468258.1	+	40245946,40247334,40251282	40245982,40247448,40251683	0.900000
testis_male_adult_54_years	chr19	54448601	54448608	54448601	+	High_confidence	15	15	25	0.928300	4.263465	chr19	54448651	54448966	SINE|Alu|AluSg	+	chr19	54448886	54462037	LENG8|ENST00000326764.9	+	54448886,54451289,54452092,54452650,54453545,54454429,54454950,54455363,54455966,54456324,54456635,54457746,54457933,54458102,54458313,54460765	54449310,54451382,54452267,54452752,54453656,54454682,54455092,54455567,54456245,54456465,54456921,54457848,54458002,54458232,54458521,54462037	0.560000
testis_male_adult_54_years	chr5	115296237	115296287	115296237	-	High_confidence	48	56	355	13.181864	6.986264	chr5	115296013	115296236	SINE|MIR|MIRb	-	chr5	115267638	115296268	CCDC112|ENST00000395557.4	-	115267638,115268881,115269702,115271212,115275215,115275993,115276964,115279646,115284786,115295909	115267918,115269000,115269798,115271626,115275606,115276069,115277054,115279768,115284908,115296268	0.915493
testis_male_adult_54_years	chr6	158631135	158631191	158631173	+	RAMPAGE_only	9	9	53	1.967997	5.392747	chr6	158631108	158631267	SINE|MIR|MIRc	-	chr6	158559979	158635428	STRG.155512.7	+	158559979,158573419,158580939,158583953,158585303,158589671,158605266,158607243,158608332,158608658,158623549,158625702,158631322,158631809	158561373,158573523,158580995,158584044,158585425,158589782,158605347,158607343,158608463,158608750,158625206,158629819,158631389,158635428	0.830189
testis_male_adult_54_years	chr8	61301048	61301069	61301063	-	High_confidence	237	240	455	16.895065	6.442888	chr8	61300698	61301320	LINE|L2|L2c	+	chr8	61264623	61301018	STRG.184868.1	-	61264623,61273920,61292004,61292283,61294572,61300039,61300693	61264848,61274036,61292091,61292400,61294620,61300593,61301018	0.980220
testis_male_adult_54_years	chr12	123630180	123630183	123630182	-	RAMPAGE_only	5	8	9	0.334188	2.750000	chr12	123629883	123630152	SINE|MIR|MIR	-	chr12	123620405	123633688	STRG.262850.5	-	123620405,123622635,123624786,123626424,123630168,123630396,123632344,123633544	123621920,123622761,123624862,123627156,123630285,123630533,123632446,123633688	0.888889
testis_male_adult_54_years	chr15	70586605	70586606	70586605	-	High_confidence	661	664	677	25.138372	5.683497	chr15	70586191	70587730	LTR|ERV1|LTR12C	-	chr15	70570957	70586606	LINC02204|ENST00000630447.1	-	70570957,70585874	70573431,70586606	0.967504
testis_male_adult_54_years	chr3	113802755	113802756	113802755	+	RAMPAGE_only	13	13	16	0.594112	3.773557	chr3	113802665	113802960	SINE|Alu|AluJb	-	chr3	113799030	113811955	STRG.74853.5	+	113799030,113801571,113803582,113805353,113809334	113801139,113802825,113803677,113805525,113811955	0.875000
testis_male_adult_54_years	chr4	6927318	6927321	6927318	+	RAMPAGE_only	7	7	13	0.482716	3.418296	chr4	6927305	6927415	SINE|MIR|MIR	+	chr4	6909844	7033111	TBC1D14|ENST00000409757.8	+	6909844,6923372,6967303,6994183,6996324,6999084,7001144,7004843,7006631,7009876,7010652,7014447,7025003,7030326	6909951,6924111,6967424,6994302,6996407,6999202,7001251,7004924,7006726,7009948,7010781,7014557,7025262,7033111	0.538462
testis_male_adult_54_years	chr16	72094445	72094456	72094445	-	High_confidence	3	3	9	0.334188	3.000000	chr16	72094430	72094550	LINE|L2|L2a	+	chr16	72086396	72094431	TXNL4B|ENST00000426362.6	-	72086396,72088986,72090617,72094193	72086802,72089138,72090786,72094431	0.777778
testis_male_adult_54_years	chr3	125061436	125061488	125061483	+	High_confidence	11	11	37	1.373884	4.836592	chr3	125060193	125061692	LINE|L2|L2b	-	chr3	125061412	125063663	STRG.77051.2	+	125061412,125061870	125061523,125063663	0.945946
testis_male_adult_54_years	chr2	134868969	134869037	134868969	-	RAMPAGE_only	5	6	30	1.113960	4.348394	chr2	134868866	134869040	SINE|MIR|MIR3	+	chr2	134866632	134918606	CCNT2-AS1|NR_036549.1	-	134866632,134868943,134876106,134877519,134918562	134867739,134869041,134876138,134877643,134918606	0.933333
testis_male_adult_54_years	chr8	31177082	31177100	31177099	-	High_confidence	6	6	17	0.631244	4.000000	chr8	31176942	31177294	LTR|ERV1|MER51A	+	chr8	31167077	31177212	STRG.182518.1	-	31167077,31171140,31176691	31167192,31171318,31177212	0.647059
testis_male_adult_54_years	chrX	133662081	133662131	133662085	-	RAMPAGE_only	6	6	20	0.742640	4.247928	chrX	133662014	133662231	LINE|L2|L2b	-	chrX	133596365	133753702	GPC3|ENST00000406757.2	-	133596365,133661729,133692368,133699894,133753481	133596599,133661850,133692494,133700028,133753702	0.500000
testis_male_adult_54_years	chr6	39109578	39109579	39109578	-	High_confidence	6	6	6	0.222792	2.584963	chr6	39109533	39109633	LINE|L1|L1MA4A	-	chr6	39104063	39109572	SAYSD1|ENST00000373249.5	-	39104063,39109313	39105776,39109572	0.833333
testis_male_adult_54_years	chr16	2669572	2669585	2669584	-	RAMPAGE_only	4	4	9	0.334188	3.000000	chr16	2669524	2670537	LTR|ERVK|LTR13	-	chr16	2611391	2671405	STRG.301687.1	-	2611391,2616599,2618481,2618821,2622689,2633738,2634494,2638283,2638669,2642228,2650983,2660901,2669410	2615242,2616773,2618578,2618890,2622765,2633836,2634639,2638421,2638712,2642489,2660875,2663407,2671405	0.555556
testis_male_adult_54_years	chr17	51259144	51259187	51259144	-	High_confidence	4	5	24	0.891168	4.303509	chr17	51259052	51259224	LINE|CR1|L3	+	chr17	51191583	51259941	MBTD1|ENST00000405860.7	-	51191583,51193427,51195213,51201591,51202021,51202700,51203139,51203790,51206887,51209313,51217333,51218929,51220329,51225007,51259142,51259834	51193016,51193510,51195361,51201696,51202077,51202935,51203228,51203925,51207005,51209430,51217416,51219044,51220463,51225209,51259206,51259941	0.833333
testis_male_adult_54_years	chr3	32579177	32579178	32579177	-	RAMPAGE_only	7	8	10	0.371320	3.121928	chr3	32578580	32579842	LTR|ERV1|LTR12E	+	chr3	32525970	32570874	DYNC1LI1|NM_016141.3	-	32525970,32528445,32529539,32530283,32530460,32532985,32534510,32537010,32541036,32544875,32545848,32570345,32570624	32526908,32528601,32529660,32530328,32530520,32533097,32534646,32537104,32541206,32545106,32545965,32570419,32570874	0.700000
testis_male_adult_54_years	chr4	172156165	172156177	172156165	+	RAMPAGE_only	13	13	28	1.039696	4.532665	chr4	172155984	172156360	LTR|ERV1|MER48	-	chr4	172052444	173040100	GALNTL6|ENST00000508122.5	+	172052444,172229655,172311613,172348522,172809360,172813539,172882789,172931160,172952036,173009177,173021475,173039932	172052531,172229764,172311752,172348689,172809546,172813723,172882907,172931268,172952258,173009294,173021625,173040100	0.678571
testis_male_adult_54_years	chr3	43291004	43291035	43291034	+	RAMPAGE_only	12	12	30	1.113960	4.323231	chr3	43290779	43291117	LINE|L2|L2c	-	chr3	43286539	43351138	SNRK|ENST00000296088.11	+	43286539,43299753,43303097,43332168,43340286,43343343,43347338	43286675,43299815,43303792,43332310,43340499,43343478,43351138	0.866667
testis_male_adult_54_years	chr13	30931603	30931618	30931614	-	High_confidence	4	5	10	0.371320	3.169925	chr13	30931494	30931993	LTR|ERV1|LTR45C	-	chr13	30882948	30931625	TEX26-AS1|ENST00000588726.5	-	30882948,30930800,30931245	30883335,30930874,30931625	0.800000
testis_male_adult_54_years	chr12	131121891	131121920	131121919	+	High_confidence	4	5	13	0.482716	3.251629	chr12	131121805	131121952	LTR|ERVL-MaLR|MLT1K	-	chr12	131121953	131139489	ADGRD1|ENST00000540207.1	+	131121953,131131724,131136036,131136972,131138136,131139167	131121995,131131816,131136163,131137014,131138229,131139489	0.769231
testis_male_adult_54_years	chrX	151562922	151562934	151562925	+	High_confidence	4	4	10	0.371320	3.321928	chrX	151561758	151563344	LTR|ERV1|LTR12C	-	chrX	151563534	151676739	PASD1|NM_173493.2	+	151563534,151601526,151604645,151611663,151620929,151621481,151622936,151625447,151648614,151659712,151664118,151671037,151671572,151672182,151673927,151675996	151563839,151601581,151604734,151611753,151621029,151621592,151623064,151625530,151648702,151659836,151664348,151671196,151671779,151672661,151674186,151676739	0.500000
testis_male_adult_54_years	chr19	56483991	56484011	56483991	-	High_confidence	20	22	51	1.893733	4.048367	chr19	56483325	56484483	LINE|L2|L2a	+	chr19	56480396	56483977	AC004696.2|ENST00000624022.1	-	56480396,56483795	56480545,56483977	0.901961
testis_male_adult_54_years	chr2	203785934	203785975	203785934	+	High_confidence	8	12	58	2.153657	4.979012	chr2	203784643	203786140	LTR|ERV1|LTR12C	-	chr2	203785464	203786692	STRG.56153.1	+	203785464	203786692	0.775862
testis_male_adult_54_years	chr21	27638649	27638651	27638650	+	High_confidence	15	29	37	1.373884	4.683542	chr21	27638476	27638663	LINE|L1|HAL1	+	chr21	27638692	27653491	LINC01673|ENST00000426418.1	+	27638692,27648664,27653355	27638923,27648765,27653491	0.810811
testis_male_adult_54_years	chr2	74338887	74338893	74338887	-	RAMPAGE_only	10	10	20	0.742640	4.221928	chr2	74338843	74338908	LINE|L1|L1ME4b	+	chr2	74216241	74343407	SLC4A5|NM_133478.2	-	74216241,74221433,74222867,74224839,74226956,74227809,74231235,74232468,74233401,74235100,74239334,74241993,74247035,74248352,74250342,74252178,74252973,74254618,74255774,74259587,74262136,74264146,74265103,74285772,74304488,74314944,74328119,74334026,74338854,74342457,74343355	74218792,74221501,74222952,74224995,74227130,74227878,74231308,74232647,74233563,74235214,74239535,74242052,74247307,74248486,74250517,74252388,74253128,74254706,74255932,74259643,74262232,74264299,74265264,74285902,74304680,74315025,74328186,74334177,74338903,74342534,74343407	0.600000
testis_male_adult_54_years	chr6	118467416	118467459	118467443	+	High_confidence	5	7	32	1.188224	4.696132	chr6	118466759	118467472	LINE|L2|L2b	-	chr6	118467458	118496241	STRG.150390.1	+	118467458,118481028,118485385,118491771,118495777	118467540,118481084,118485469,118491888,118496241	0.562500
testis_male_adult_54_years	chr1	160350214	160350215	160350214	+	High_confidence	8	9	10	0.371320	3.121928	chr1	160350194	160350231	LINE|RTE-BovB|MamRTE1	-	chr1	160350104	160355753	NCSTN|ENST00000424645.6	+	160350104,160351287,160351695,160352053,160352886,160353159,160354117,160355654	160350250,160351372,160351805,160352206,160352991,160353237,160354290,160355753	0.900000
testis_male_adult_54_years	chr17	35868941	35868955	35868941	+	High_confidence	10	10	24	0.891168	4.262692	chr17	35868938	35869113	SINE|MIR|MIRc	+	chr17	35868966	35885863	AC015849.1|ENST00000605548.1	+	35868966,35884381,35884686,35885507,35885705	35869118,35884535,35884779,35885612,35885863	0.875000
testis_male_adult_54_years	chr5	134611011	134611065	134611011	-	RAMPAGE_only	3	3	19	0.705508	3.947703	chr5	134610883	134611163	SINE|Alu|AluJr4	-	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.631579
testis_male_adult_54_years	chr12	93815085	93815105	93815090	+	High_confidence	5	5	14	0.519848	3.700440	chr12	93814948	93815649	DNA|hAT-Charlie|MER20B	+	chr12	93815135	93816109	CRADD|ENST00000550766.1	+	93815135,93815403,93815866	93815248,93815481,93816109	0.500000
testis_male_adult_54_years	chr20	17469758	17469759	17469758	+	RAMPAGE_only	6	6	8	0.297056	2.750000	chr20	17469740	17469858	SINE|MIR|MIR	-	chr20	17463432	17482287	PCSK2|ENST00000459871.1	+	17463432,17481583	17465553,17482287	0.500000
testis_male_adult_54_years	chr9	24739468	24739469	24739468	+	High_confidence	16	16	20	0.742640	3.884184	chr9	24738352	24739913	LTR|ERV1|LTR12C	+	chr9	24739747	24740345	STRG.199165.1	+	24739747	24740345	0.850000
testis_male_adult_54_years	chr3	180914895	180914896	180914895	+	High_confidence	8	8	11	0.408452	3.321928	chr3	180914939	180915047	SINE|MIR|MIRc	+	chr3	180915433	180976378	FXR1|ENST00000480918.5	+	180915433,180933333,180935137,180947864,180948346,180948720,180949226,180951297,180953761,180957818,180961467,180962882,180963027,180968050,180970157,180975312,180976121	180915528,180933386,180935231,180947936,180948495,180948814,180949343,180951468,180953840,180957928,180961554,180962940,180963090,180968254,180970358,180975404,180976378	0.636364
testis_male_adult_54_years	chr8	81336061	81336102	81336091	+	High_confidence	7	7	28	1.039696	4.440636	chr8	81335975	81336425	LTR|ERVL-MaLR|MLT1C	-	chr8	81336300	81337482	STRG.187552.1	+	81336300,81337215	81336351,81337482	0.500000
testis_male_adult_54_years	chr6	57574310	57574312	57574311	+	RAMPAGE_only	25	49	51	1.893733	4.540645	chr6	57574165	57574489	LTR|ERV1|MER51A	+	chr6	57317623	57646849	PRIM2|ENST00000615550.4	+	57317623,57318436,57320456,57324200,57325924,57379900,57382030,57507386,57532410,57537439,57601092,57606374,57632132,57645927	57317701,57318599,57320560,57324280,57326045,57379996,57382168,57507454,57532483,57537625,57601219,57606457,57632201,57646849	0.823529
testis_male_adult_54_years	chr1	197360347	197360365	197360347	+	High_confidence	2	4	11	0.408452	3.121928	chr1	197360090	197360608	LTR|ERVL|MER70C	+	chr1	197360348	197421441	CRB1|ENST00000476483.1	+	197360348,197420999	197360479,197421441	0.727273
testis_male_adult_54_years	chr17	36620336	36620355	36620336	+	High_confidence	3	4	11	0.408452	3.277613	chr17	36620333	36620659	LINE|CR1|L3	+	chr17	36620321	36621409	STRG.316697.1	+	36620321	36621409	0.909091
testis_male_adult_54_years	chr9	133414223	133414247	133414246	-	RAMPAGE_only	11	11	43	1.596676	5.064869	chr9	133414068	133414234	SINE|Alu|AluJb	-	chr9	133411003	133417954	REXO4|ENST00000494045.5	-	133411003,133412298,133412777,133417619	133411073,133412492,133412921,133417954	0.697674
testis_male_adult_54_years	chr6	52530700	52530732	52530725	-	RAMPAGE_only	8	8	22	0.816904	3.975418	chr6	52530399	52530844	LTR|ERVL-MaLR|MLT1C	+	chr6	52497412	52577088	STRG.142417.2	-	52497412,52504590,52505598,52506031,52507552,52508233,52509527,52516005,52516627,52529421,52576795	52503270,52504754,52505742,52506136,52507623,52508318,52509586,52516122,52516737,52535846,52577088	0.954545
testis_male_adult_54_years	chrX	103577211	103577212	103577211	+	High_confidence	13	19	19	0.705508	3.721612	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
testis_male_adult_54_years	chr13	58318896	58318925	58318904	+	High_confidence	11	11	65	2.413581	5.691448	chr13	58317810	58319099	LTR|ERV1|LTR12C	-	chr13	58318753	58387223	STRG.269513.1	+	58318753,58387163	58319266,58387223	0.553846
testis_male_adult_54_years	chr4	67151863	67151914	67151863	-	High_confidence	8	9	30	1.113960	4.415061	chr4	67151698	67152983	LTR|ERV1|LTR12C	+	chr4	67151368	67151973	STRG.95674.1	-	67151368	67151973	0.866667
testis_male_adult_54_years	chr15	20826151	20826152	20826151	-	High_confidence	9	9	10	0.371320	2.947703	chr15	20825752	20826217	LINE|L1|L1P4	-	chr15	20803504	20826173	AC012414.7|ENST00000621235.1	-	20803504,20818038,20826148	20804932,20818092,20826173	0.900000
testis_male_adult_54_years	chr20	48359912	48359939	48359912	+	High_confidence	11	12	50	1.856601	5.038563	chr20	48359855	48360168	LINE|L2|L2b	+	chr20	48359910	48370638	LINC00494|NR_026958.1	+	48359910,48364888,48366473,48366735,48368079	48360150,48365197,48366633,48367059,48370638	0.580000
testis_male_adult_54_years	chr3	49747941	49747942	49747941	-	High_confidence	8	8	10	0.371320	2.947703	chr3	49747932	49747982	DNA|hAT-Tip100|MamTip2	+	chr3	49738271	49748928	IP6K1|ENST00000479464.1	-	49738271,49747817,49748868	49738422,49748168,49748928	0.500000
testis_male_adult_54_years	chr15	59615191	59615198	59615191	+	RAMPAGE_only	3	3	7	0.259924	2.584963	chr15	59615027	59615598	LTR|ERVL|LTR50	+	chr15	59616433	59618398	GCNT3|ENST00000559626.1	+	59616433,59618178	59616881,59618398	0.857143
testis_male_adult_54_years	chr19	46413530	46413612	46413611	-	High_confidence	23	23	115	4.270181	5.964465	chr19	46413579	46413731	LTR|Gypsy|LTR104_Mam	-	chr19	46410378	46413564	CCDC8|ENST00000307522.4	-	46410378	46413564	0.973913
testis_male_adult_54_years	chr20	37104672	37104681	37104680	-	High_confidence	15	16	23	0.854036	3.422578	chr20	37104439	37104712	SINE|Alu|AluSx	-	chr20	37101229	37104699	STRG.343645.10	-	37101229,37102663,37104612	37101418,37103133,37104699	0.913043
testis_male_adult_54_years	chr19	21440657	21440675	21440674	-	RAMPAGE_only	2	2	7	0.259924	2.521641	chr19	21440180	21440667	LTR|ERV1|HERV3-int	-	chr19	21433605	21463872	STRG.334158.3	-	21433605,21440414,21454382,21456460,21463743	21433947,21453279,21454472,21456588,21463872	0.857143
testis_male_adult_54_years	chr11	72332923	72332935	72332934	-	High_confidence	6	6	13	0.482716	3.418296	chr11	72332521	72332971	LINE|L1|L1MB7	-	chr11	72293296	72332954	CLPB|ENST00000645105.1	-	72293296,72294021,72294324,72294619,72295491,72301802,72302303,72307198,72308526,72317105,72329706,72332761	72293615,72294126,72294444,72294693,72295648,72301964,72302348,72307254,72308604,72317220,72329804,72332954	0.769231
testis_male_adult_54_years	chr9	35040966	35040967	35040966	-	RAMPAGE_only	14	14	14	0.519848	3.807355	chr9	35040834	35041419	LTR|ERV1|LTR10C	-	chr9	35038624	35044326	AL353795.3|ENST00000624351.1	-	35038624	35044326	0.571429
testis_male_adult_54_years	chr5	137127211	137127282	137127211	+	High_confidence	20	20	48	1.782337	5.209963	chr5	137126766	137127261	LTR|ERVL-MaLR|MLT1A0-int	+	chr5	137127220	137131021	STRG.128269.1	+	137127220,137130689	137127264,137131021	0.562500
testis_male_adult_54_years	chr6	20321121	20321122	20321121	+	RAMPAGE_only	50	51	59	2.190789	4.969394	chr6	20320048	20321457	LTR|ERV1|LTR12C	+	chr6	20319655	20333114	STRG.137688.1	+	20319655,20331705	20321575,20333114	0.881356
testis_male_adult_54_years	chr12	130864502	130864503	130864502	+	RAMPAGE_only	6	7	8	0.297056	3.000000	chr12	130864280	130864572	LTR|ERVL-MaLR|MLT1F1	-	chr12	130871878	130877678	RAN|ENST00000543796.5	+	130871878,130872583,130872835,130873002,130874545,130875611,130875881	130872126,130872629,130872920,130873128,130874733,130875782,130877678	0.500000
testis_male_adult_54_years	chr11	32136888	32136912	32136905	+	High_confidence	3	3	10	0.371320	2.947703	chr11	32136526	32137015	LTR|ERVL-MaLR|MLT1K	-	chr11	32136907	32143719	AL078612.2|ENST00000649877.1	+	32136907,32143143	32137242,32143719	0.800000
testis_male_adult_54_years	chr3	152153327	152153345	152153327	+	RAMPAGE_only	2	2	7	0.259924	2.584963	chr3	152152232	152153792	LTR|ERV1|LTR12C	+	chr3	152157056	152158839	STRG.80484.1	+	152157056	152158839	0.571429
testis_male_adult_54_years	chr1	204140061	204140091	204140061	-	RAMPAGE_only	16	19	56	2.079393	4.513203	chr1	204139662	204140016	DNA|TcMar-Tigger|Tigger3a	-	chr1	204131955	204141262	ETNK2|ENST00000367197.5	-	204131955,204134514,204137103,204140034,204141024	204132256,204134588,204137249,204140118,204141262	0.910714
testis_male_adult_54_years	chr5	151310024	151310028	151310024	+	High_confidence	56	59	88	3.267617	5.139229	chr5	151309004	151310543	LTR|ERV1|LTR12C	+	chr5	151310037	151312779	STRG.130257.1	+	151310037	151312779	0.965909
testis_male_adult_54_years	chr16	30660928	30660929	30660928	+	RAMPAGE_only	6	6	8	0.297056	2.521641	chr16	30660701	30661093	LINE|L2|L2c	-	chr16	30659925	30662697	STRG.306582.5	+	30659925,30660262,30661303,30662419,30662558	30659977,30661215,30661333,30662468,30662697	0.500000
testis_male_adult_54_years	chr19	55676628	55676634	55676633	+	High_confidence	3	6	9	0.334188	3.169925	chr19	55676523	55676713	SINE|MIR|MIRb	-	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.777778
testis_male_adult_54_years	chr4	28113239	28113274	28113239	-	RAMPAGE_only	17	17	27	1.002564	3.776874	chr4	28112596	28114035	LTR|ERV1|LTR12C	+	chr4	28031452	28116766	STRG.92033.1	-	28031452,28114050,28116447	28032460,28114185,28116766	0.740741
testis_male_adult_54_years	chr6	155149149	155149165	155149149	+	High_confidence	87	90	229	8.503231	6.088971	chr6	155148977	155149191	LTR|ERVL|LTR16	-	chr6	155149120	155257190	TIAM2|ENST00000528391.6	+	155149120,155164414,155165262,155168844,155176815,155179038,155179377,155182225,155183236,155211203,155240529,155244010,155244657,155245622,155247999,155249850,155250912,155251944,155252947,155253972,155254418,155256459	155149226,155164600,155165409,155168916,155176977,155179143,155179456,155182318,155183500,155211307,155240709,155244079,155244783,155245731,155248179,155249969,155251021,155252003,155253053,155254060,155254573,155257190	0.930131
testis_male_adult_54_years	chr11	65434452	65434469	65434452	+	RAMPAGE_only	4	4	14	0.519848	3.807355	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65425550	65445540	STRG.235831.6	+	65425550,65437228	65437184,65445540	1.000000
testis_male_adult_54_years	chr7	29425104	29425144	29425143	+	RAMPAGE_only	11	11	40	1.485280	4.333622	chr7	29425091	29425491	LTR|ERVL-MaLR|MLT1I	+	chr7	29422588	29426248	STRG.161401.1	+	29422588	29426248	0.950000
testis_male_adult_54_years	chr2	95121533	95121575	95121537	-	High_confidence	15	15	46	1.708073	5.358520	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.913043
testis_male_adult_54_years	chr12	57935519	57935534	57935528	-	High_confidence	3	3	13	0.482716	3.584963	chr12	57935455	57935567	LINE|L2|L2	+	chr12	57931568	57936059	AC084033.3|ENST00000547492.1	-	57931568,57935469	57931737,57936059	0.692308
testis_male_adult_54_years	chr1	46193184	46193195	46193184	-	High_confidence	4	5	10	0.371320	2.641604	chr1	46193040	46193162	SINE|MIR|MIR1_Amn	-	chr1	46190116	46193800	POMGNT1|ENST00000485714.1	-	46190116,46192307,46192517,46192899,46193173,46193304	46192223,46192436,46192590,46192958,46193215,46193800	0.700000
testis_male_adult_54_years	chr2	208251431	208251451	208251431	-	RAMPAGE_only	3	3	9	0.334188	2.947703	chr2	208251248	208251382	SINE|Alu|FLAM_A	-	chr2	208236226	208254303	IDH1|NM_001282387.1	-	208236226,208239070,208239862,208241993,208243426,208245318,208248368,208251429,208253885,208254030	208237169,208239233,208240003,208242145,208243604,208245424,208248660,208251567,208253959,208254303	1.000000
testis_male_adult_54_years	chr9	79567715	79567762	79567758	-	RAMPAGE_only	61	69	173	6.423838	6.039505	chr9	79567459	79568146	LTR|ERVL|LTR41	-	chr9	79515642	79532342	LNCARSR|ENST00000413352.3	-	79515642,79532216	79518448,79532342	0.878613
testis_male_adult_54_years	chr15	82047617	82047626	82047617	+	RAMPAGE_only	3	3	7	0.259924	2.807355	chr15	82047614	82047816	SINE|MIR|MIR	+	chr15	82046374	82049383	STRG.298484.1	+	82046374	82049383	0.857143
testis_male_adult_54_years	chr13	79566627	79566660	79566640	+	High_confidence	16	16	36	1.336752	3.714192	chr13	79560395	79566666	LINE|L1|L1PA12	+	chr13	79566726	79571446	LINC01068|NR_125772.1	+	79566726,79570562,79571079	79566807,79570750,79571446	0.944444
testis_male_adult_54_years	chr1	211726190	211726227	211726208	+	High_confidence	13	13	33	1.225356	4.687500	chr1	211726018	211726311	LINE|L2|L2c	-	chr1	211726502	211727727	STRG.24269.1	+	211726502	211727727	0.575758
testis_male_adult_54_years	chr13	26299567	26299578	26299568	+	RAMPAGE_only	3	5	10	0.371320	2.947703	chr13	26299547	26299650	LTR|ERV1|MER110-int	-	chr13	26254138	26405238	CDK8|ENST00000381527.7	+	26254138,26337566,26349071,26353739,26382813,26385210,26393366,26396284,26397152,26400452,26401268,26401465,26403955	26254769,26337642,26349182,26353880,26382871,26385342,26393510,26396354,26397225,26400550,26401347,26401624,26405238	0.700000
testis_male_adult_54_years	chr17	77253813	77253814	77253813	+	High_confidence	86	90	96	3.564673	5.646248	chr17	77253630	77253939	LINE|L1|L1MDb	-	chr17	77253822	77258007	STRG.322458.1	+	77253822,77255080,77257623	77254521,77255150,77258007	0.958333
testis_male_adult_54_years	chr1	51102227	51102242	51102241	+	High_confidence	53	55	202	7.500666	5.874792	chr1	51102092	51102324	LTR|ERVL-MaLR|MLT1J1	-	chr1	51102233	51148086	C1orf185|ENST00000371759.6	+	51102233,51112463,51118665,51145723,51147466	51102249,51112569,51118801,51145760,51148086	0.792079
testis_male_adult_54_years	chr3	97444518	97444537	97444529	+	RAMPAGE_only	2	3	9	0.334188	3.000000	chr3	97444508	97444562	LINE|L2|L2c	+	chr3	97441415	97638063	EPHA6|ENST00000508345.5	+	97441415,97448567,97475351,97479293,97483933,97532357,97592611,97610792,97612377,97637872	97441472,97448730,97475460,97479364,97484059,97532543,97592737,97610854,97612475,97638063	0.666667
testis_male_adult_54_years	chr6	33711381	33711452	33711405	-	High_confidence	6	7	45	1.670940	4.758085	chr6	33711313	33711370	DNA|hAT-Charlie|MER5B	-	chr6	33695348	33711684	UQCC2|ENST00000374231.8	-	33695348,33697622,33700443,33701345,33711548	33695448,33697750,33700513,33701420,33711684	0.600000
testis_male_adult_54_years	chr21	44405470	44405480	44405479	+	RAMPAGE_only	5	5	10	0.371320	3.121928	chr21	44405366	44405505	SINE|MIR|MIRc	+	chr21	44369120	44443081	TRPM2|ENST00000498430.5	+	44369120,44375832,44377711,44378996,44382717,44390903,44391271,44395413,44397746,44399295,44400258,44401680,44405141,44405904,44406593,44413890,44417926,44418422,44423644,44424851,44425669,44426659,44427009,44435130,44437061,44439066,44440788,44441691	44369343,44376013,44377773,44379197,44382820,44391025,44391625,44395551,44397876,44399441,44400371,44401897,44405260,44406037,44406765,44414074,44418108,44418555,44423732,44424939,44425827,44426736,44427111,44435217,44437167,44439168,44440905,44443081	0.800000
testis_male_adult_54_years	chr4	158408732	158408765	158408764	-	High_confidence	5	5	16	0.594112	3.773557	chr4	158408560	158408878	SINE|Alu|AluY	+	chr4	158395102	158408842	STRG.106752.1	-	158395102,158408703	158395343,158408842	0.625000
testis_male_adult_54_years	chr22	38654034	38654077	38654076	+	High_confidence	7	7	18	0.668376	3.499228	chr22	38654066	38654363	SINE|Alu|AluY	+	chr22	38654041	38655514	STRG.356532.1	+	38654041,38655253	38654429,38655514	0.833333
testis_male_adult_54_years	chr3	132285409	132285413	132285409	-	High_confidence	69	75	110	4.084521	6.249062	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	132028924	132285410	STRG.77957.7	-	132028924,132039524,132284042,132285239	132037710,132040321,132284170,132285410	0.654545
testis_male_adult_54_years	chr17	69563382	69563389	69563388	+	RAMPAGE_only	4	5	9	0.334188	3.000000	chr17	69563193	69563553	LTR|ERVL-MaLR|THE1B	+	chr17	69577250	69624734	LINC01483|ENST00000588501.5	+	69577250,69594786,69624669	69577325,69594940,69624734	0.555556
testis_male_adult_54_years	chr12	9664961	9664997	9664967	+	High_confidence	12	12	54	2.005129	5.301307	chr12	9664821	9665186	LTR|ERVL-MaLR|MLT1A0	+	chr12	9664968	9692883	CLEC2D|ENST00000536355.5	+	9664968,9680922,9687901,9692827	9665112,9681033,9688161,9692883	0.500000
testis_male_adult_54_years	chr12	97512703	97512722	97512703	+	RAMPAGE_only	8	9	13	0.482716	3.700440	chr12	97511941	97513302	LTR|ERV1|LTR12C	-	chr12	97464817	97598415	RMST|ENST00000639121.1	+	97464817,97465667,97483430,97492460,97493176,97493874,97494694,97495930,97530654,97560536,97560796,97590975,97593966,97598205	97465071,97465727,97483488,97492606,97493285,97494002,97494881,97496056,97530859,97560698,97561047,97591090,97594054,97598415	0.538462
testis_male_adult_54_years	chr7	156402441	156402451	156402443	-	High_confidence	8	13	25	0.928300	4.483856	chr7	156401999	156402441	LTR|Gypsy|LTR81A	-	chr7	156401754	156402452	STRG.177717.2	-	156401754	156402452	0.520000
testis_male_adult_54_years	chr19	8839669	8839697	8839669	+	High_confidence	93	94	230	8.540363	6.636777	chr19	8839589	8839920	LINE|L2|L2a	-	chr19	8839669	8843287	STRG.332288.1	+	8839669,8840911,8842657	8839721,8840999,8843287	0.960870
testis_male_adult_54_years	chr3	136961444	136961509	136961508	+	RAMPAGE_only	13	13	48	1.782337	5.334963	chr3	136961499	136961605	LINE|L1|L1MC4a	+	chr3	136958008	137011085	IL20RB|ENST00000469964.5	+	136958008,136980330,136982159,136989440,136995413,137010112	136958201,136980592,136982350,136989565,136995556,137011085	0.604167
testis_male_adult_54_years	chr14	76826236	76826275	76826257	-	High_confidence	33	34	166	6.163914	6.467399	chr14	76826137	76826208	SINE|5S-Deu-L2|AmnSINE1	-	chr14	76809351	76826246	ANGEL1|ENST00000557497.1	-	76809351,76814306,76826076	76809643,76814421,76826246	0.566265
testis_male_adult_54_years	chr11	64792713	64792714	64792713	-	RAMPAGE_only	24	25	31	1.151092	4.389898	chr11	64792644	64792834	SINE|MIR|MIR	+	chr11	64784917	64794046	STRG.235692.30	-	64784917,64789729,64789888,64790393,64791908,64792171,64792363	64789624,64789785,64790274,64790462,64792086,64792275,64794046	0.967742
testis_male_adult_54_years	chr10	129404491	129404529	129404499	-	High_confidence	3	3	14	0.519848	3.180833	chr10	129404428	129404616	LINE|L1|L1PB2	+	chr10	129402477	129403991	STRG.227575.1	-	129402477,129403426	129403396,129403991	0.785714
testis_male_adult_54_years	chr19	51354762	51354824	51354782	-	High_confidence	7	7	42	1.559544	4.975418	chr19	51354695	51355102	LTR|ERV1|MER61F	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
testis_male_adult_54_years	chr9	122405648	122405706	122405648	-	High_confidence	34	34	50	1.856601	4.543834	chr9	122405232	122406719	LTR|ERV1|LTR12C	-	chr9	122405109	122405629	STRG.210440.1	-	122405109	122405629	0.900000
testis_male_adult_54_years	chr12	132641026	132641027	132641026	-	High_confidence	5	5	8	0.297056	2.750000	chr12	132640972	132641176	SINE|MIR|MIRb	+	chr12	132634364	132641378	POLE|ENST00000434528.3	-	132634364,132635891,132638013,132639124,132641017	132634378,132636024,132638139,132639298,132641378	0.750000
testis_male_adult_54_years	chr15	55380349	55380364	55380352	-	RAMPAGE_only	4	4	13	0.482716	3.251629	chr15	55380283	55380594	SINE|Alu|AluY	-	chr15	55371986	55398268	CCPG1|ENST00000570272.5	-	55371986,55376948,55378299,55385599,55389364,55398219	55372044,55377150,55378376,55385714,55389433,55398268	0.846154
testis_male_adult_54_years	chr2	106285716	106285720	106285716	+	High_confidence	5	7	11	0.408452	2.913977	chr2	106285567	106285772	SINE|Alu|AluJr	+	chr2	106285466	106286261	STRG.43205.1	+	106285466	106286261	0.727273
testis_male_adult_54_years	chr8	19091718	19091757	19091756	+	High_confidence	11	11	75	2.784901	5.548558	chr8	19091754	19091908	SINE|MIR|MIRb	-	chr8	19091732	19115024	AC100849.2|ENST00000518324.1	+	19091732,19095446,19114884	19091888,19095669,19115024	0.666667
testis_male_adult_54_years	chr9	97682358	97682365	97682358	-	RAMPAGE_only	2	2	7	0.259924	2.807355	chr9	97682150	97682371	DNA?|DNA?|UCON74	-	chr9	97675066	97675955	XPA|ENST00000485042.1	-	97675066,97675770	97675587,97675955	0.857143
testis_male_adult_54_years	chr8	38081998	38082005	38082004	-	High_confidence	3	3	9	0.334188	2.947703	chr8	38081817	38082338	LTR|ERV1|HERV1_LTRa	-	chr8	38080165	38081865	STRG.183218.1	-	38080165,38081728	38080457,38081865	0.666667
testis_male_adult_54_years	chr10	17386911	17386936	17386935	+	High_confidence	68	68	248	9.208739	6.514610	chr10	17386606	17386994	LTR|ERV1|MER48	-	chr10	17386935	17408286	ST8SIA6-AS1|NR_034129.1	+	17386935,17399104,17407967	17387075,17399202,17408286	0.782258
testis_male_adult_54_years	chr3	51248758	51248785	51248778	+	RAMPAGE_only	8	10	37	1.373884	4.402991	chr3	51248293	51249496	Retroposon|SVA|SVA_D	+	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.675676
testis_male_adult_54_years	chr7	105399356	105399357	105399356	-	High_confidence	929	1023	1241	46.080826	6.990320	chr7	105399077	105399551	LTR|ERVL-MaLR|MLT1F1	-	chr7	105160544	105399308	STRG.170545.4	-	105160544,105167376,105168007,105169156,105203627,105268805,105297420,105388647,105399155	105160613,105167464,105168095,105169265,105203785,105268869,105297533,105388702,105399308	0.800161
testis_male_adult_54_years	chr2	118143019	118143020	118143019	-	RAMPAGE_only	18	19	25	0.928300	3.914866	chr2	118137000	118143020	LINE|L1|L1PA2	-	chr2	118132127	118186386	THORLNC|ENST00000414886.5	-	118132127,118176764,118183086,118186230	118132372,118176905,118183322,118186386	0.680000
testis_male_adult_54_years	chr13	57286568	57286600	57286568	+	High_confidence	7	7	29	1.076828	4.606739	chr13	57285459	57287161	LTR|ERV1|LTR12C	-	chr13	57286538	57408294	STRG.269582.1	+	57286538,57408217	57287202,57408294	0.620690
testis_male_adult_54_years	chr7	140927091	140927119	140927091	+	RAMPAGE_only	4	4	10	0.371320	3.321928	chr7	140927108	140927290	SINE|MIR|MIRc	+	chr7	140924958	140942245	STRG.175360.1	+	140924958,140927070,140933584,140939386	140926502,140927189,140933672,140942245	0.900000
testis_male_adult_54_years	chr3	123071324	123071367	123071324	+	RAMPAGE_only	4	4	16	0.594112	3.625000	chr3	123071171	123071331	SINE|MIR|MIR3	-	chr3	123067347	123106842	PDIA5|ENST00000484644.5	+	123067347,123089167,123092354,123102410,123102750,123106748	123067575,123089294,123092442,123102494,123102796,123106842	0.812500
testis_male_adult_54_years	chr3	9362841	9362876	9362841	+	High_confidence	2	2	12	0.445584	3.277613	chr3	9362687	9362878	SINE|MIR|MIRb	+	chr3	9362841	9385702	THUMPD3|ENST00000452837.6	+	9362841,9365015,9366907,9371059,9374515,9377818,9380502,9383198,9384211,9384523	9363127,9365320,9366985,9371536,9374646,9377888,9380618,9383309,9384335,9385702	0.916667
testis_male_adult_54_years	chr2	163450547	163450549	163450548	+	High_confidence	28	54	73	2.710637	5.135779	chr2	163450248	163450965	LTR|ERV1|LTR12	+	chr2	163450567	163450847	STRG.50136.1	+	163450567	163450847	0.561644
testis_male_adult_54_years	chr15	65300634	65300635	65300634	-	High_confidence	1213	1223	1265	46.971994	6.362782	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65247897	65300627	STRG.296040.1	-	65247897,65259463,65260884,65263148,65266561,65270934,65300198	65248228,65259542,65261026,65263320,65266768,65271072,65300627	0.791304
testis_male_adult_54_years	chr15	40488126	40488133	40488126	+	High_confidence	5	5	14	0.519848	3.700440	chr15	40488047	40488576	LINE|L1|L1M3f	+	chr15	40488040	40558019	AC091045.1|ENST00000561460.5	+	40488040,40508331,40552842,40556953	40488207,40508444,40553773,40558019	0.500000
testis_male_adult_54_years	chr12	124804083	124804112	124804083	-	RAMPAGE_only	1	1	8	0.297056	2.807355	chr12	124804066	124804520	LTR|ERVL-MaLR|MLT1K	+	chr12	124785819	124817707	SCARB1|ENST00000544327.1	-	124785819,124787405,124795194,124800123,124807760,124810173,124811869,124814201,124814972,124817549	124786503,124787457,124795268,124800242,124807927,124810289,124811965,124814405,124815114,124817707	0.500000
testis_male_adult_54_years	chr6	117372854	117372855	117372854	-	High_confidence	171	171	201	7.463534	5.567494	chr6	117372437	117373840	LTR|ERV1|LTR12C	-	chr6	117370955	117372864	STRG.150259.1	-	117370955	117372864	0.950249
testis_male_adult_54_years	chr11	124674181	124674231	124674184	+	High_confidence	5	5	40	1.485280	4.631305	chr11	124674230	124674340	SINE|Alu|AluJo	+	chr11	124673909	124694661	STRG.244377.4	+	124673909,124675246,124681388,124691695,124694302	124673952,124675418,124681459,124691782,124694661	0.525000
testis_male_adult_54_years	chr17	16682954	16682976	16682954	+	RAMPAGE_only	6	6	27	1.002564	4.458591	chr17	16682883	16683018	SINE|Alu|AluSx3	-	chr17	16690231	16712148	CCDC144A|ENST00000340621.9	+	16690231,16692978,16705150,16707471,16708795,16711678	16690744,16693049,16705399,16707542,16709635,16712148	0.555556
testis_male_adult_54_years	chr16	87292434	87292451	87292434	-	High_confidence	37	43	139	5.161350	6.409970	chr16	87292123	87292641	LTR|ERVL-MaLR|MLT1F	-	chr16	87271905	87292452	LOC101928682|NR_104667.1	-	87271905,87273147,87290718,87291683,87292367	87272154,87273384,87290797,87291737,87292452	0.539568
testis_male_adult_54_years	chr10	101800145	101800162	101800161	-	High_confidence	5	5	9	0.334188	2.725481	chr10	101799879	101800170	SINE|Alu|AluSx	-	chr10	101786133	101799332	OGA|ENST00000482611.5	-	101786133,101787363,101790895,101791353,101792838,101797979,101798841	101786587,101787523,101791088,101791439,101792943,101798154,101799332	1.000000
testis_male_adult_54_years	chr6	118467363	118467384	118467363	-	RAMPAGE_only	6	6	17	0.631244	3.452820	chr6	118466759	118467472	LINE|L2|L2b	-	chr6	118460771	118496328	STRG.150430.2	-	118460771,118469071,118470536,118479870,118480395,118481778,118483705	118465568,118469303,118470644,118479921,118480513,118481933,118496328	0.941176
testis_male_adult_54_years	chr7	103274139	103274149	103274139	-	RAMPAGE_only	3	3	8	0.297056	2.750000	chr7	103274079	103275487	LTR|ERV1|LTR12C	-	chr7	103273091	103280277	DPY19L2P2|ENST00000446373.1	-	103273091,103277613,103279832	103275627,103277638,103280277	0.875000
testis_male_adult_54_years	chr17	18968942	18968969	18968968	+	RAMPAGE_only	3	4	10	0.371320	2.641604	chr17	18968887	18969010	SINE|MIR|MIRc	-	chr17	18960581	18977113	STRG.314929.1	+	18960581,18969051,18969341,18971012,18976853	18960652,18969157,18969422,18971218,18977113	0.700000
testis_male_adult_54_years	chr6	151791373	151791379	151791373	+	High_confidence	30	33	70	2.599241	5.495504	chr6	151791178	151791542	LTR|ERVL-MaLR|THE1B	+	chr6	151791383	151842914	STRG.154976.2	+	151791383,151807842,151842596	151791459,151808364,151842914	0.814286
testis_male_adult_54_years	chr17	39564789	39564790	39564789	+	RAMPAGE_only	4	4	7	0.259924	2.584963	chr17	39564791	39564909	LINE|CR1|L3b	+	chr17	39566914	39567559	AC009283.1|ENST00000615852.1	+	39566914	39567559	0.571429
testis_male_adult_54_years	chr6	153856377	153856409	153856377	-	High_confidence	204	205	510	18.937326	5.896838	chr6	153855959	153857474	LTR|ERV1|LTR12C	-	chr6	153815704	153856421	STRG.154670.3	-	153815704,153855615	153816142,153856421	0.986275
testis_male_adult_54_years	chr1	41159727	41159768	41159727	-	High_confidence	1	1	12	0.445584	3.459432	chr1	41159678	41159745	SINE|MIR|MIRb	-	chr1	41027203	41159871	STRG.5365.8	-	41027203,41028583,41037361,41045712,41046406,41048689,41070594,41075218,41113282,41116921,41142877,41151613,41152598,41159724	41028319,41028726,41037541,41046126,41046598,41048890,41070721,41075451,41113526,41117010,41143112,41151684,41152741,41159871	0.666667
testis_male_adult_54_years	chr3	163303316	163303342	163303316	-	High_confidence	53	53	142	5.272746	5.810667	chr3	163303098	163309113	LINE|L1|L1MA1	+	chr3	163219059	163303317	LINC01192|ENST00000488173.5	-	163219059,163220100,163275195,163278509,163303237	163219177,163220187,163275319,163278603,163303317	0.697183
testis_male_adult_54_years	chr20	20729236	20729262	20729257	+	High_confidence	17	17	56	2.079393	4.856017	chr20	20729116	20729647	LTR|ERVL-MaLR|MLT1G1	-	chr20	20729254	20729609	STRG.342697.1	+	20729254	20729609	0.535714
testis_male_adult_54_years	chr18	36122228	36122243	36122242	-	High_confidence	13	14	26	0.965432	4.053509	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.923077
testis_male_adult_54_years	chr2	30155853	30155871	30155853	+	High_confidence	5	6	12	0.445584	3.277613	chr2	30155874	30156048	SINE|MIR|MIRb	+	chr2	30156377	30159138	YPEL5|ENST00000495673.1	+	30156377,30158618	30156792,30159138	0.750000
testis_male_adult_54_years	chr1	220475268	220475269	220475268	-	High_confidence	23	23	23	0.854036	4.349649	chr1	220474850	220476259	LTR|ERV1|LTR12C	-	chr1	220473511	220475277	STRG.25298.1	-	220473511	220475277	0.956522
testis_male_adult_54_years	chr3	80770578	80770614	80770607	+	High_confidence	15	31	98	3.638937	5.878171	chr3	80770587	80770950	LTR|ERV1|LTR1A2	-	chr3	80770362	80778517	STRG.71257.1	+	80770362	80778517	0.877551
testis_male_adult_54_years	chr3	25737328	25737368	25737367	-	RAMPAGE_only	2	2	9	0.334188	3.000000	chr3	25737106	25737338	SINE|MIR|MIRb	-	chr3	25719278	25783364	NGLY1|ENST00000280699.13	-	25719278,25720013,25729132,25732318,25733871,25736003,25737333,25751097,25764065,25778573,25783259	25719635,25720191,25729318,25732483,25733982,25736149,25737455,25751263,25764311,25778688,25783364	0.777778
testis_male_adult_54_years	chr5	72896542	72896555	72896542	+	RAMPAGE_only	2	2	11	0.408452	2.845351	chr5	72896587	72896884	SINE|Alu|AluSx1	+	chr5	72893675	72905580	TNPO1|ENST00000605210.1	+	72893675,72896457,72897055,72900005,72900973,72903708,72905302	72893703,72896556,72897151,72900081,72901073,72903783,72905580	1.000000
testis_male_adult_54_years	chr10	79399569	79399605	79399604	-	RAMPAGE_only	10	11	24	0.891168	3.481715	chr10	79399514	79399644	SINE|MIR|MIR3	-	chr10	79386036	79444219	ZCCHC24|ENST00000372333.3	-	79386036,79394275,79432557,79444101	79386458,79394440,79432758,79444219	0.750000
testis_male_adult_54_years	chr9	110153672	110153694	110153672	+	RAMPAGE_only	3	3	9	0.334188	3.000000	chr9	110153619	110153764	LINE|L2|L2a	-	chr9	110148527	110168406	AKAP2|ENST00000485762.1	+	110148527,110156318,110168398	110148703,110156497,110168406	0.555556
testis_male_adult_54_years	chr1	78922290	78922313	78922295	-	RAMPAGE_only	3	3	15	0.556980	3.664498	chr1	78922058	78922480	LINE|L2|L2a	-	chr1	78891153	79006654	ADGRL4|ENST00000640664.1	-	78891153,78891523,78893097,78917633,78917829,78920182,78921612,78926885,78936294,78937806,78938099,78939187,78939648,78946273,79005069,79006632	78891216,78891692,78893189,78917700,78918050,78920386,78921786,78927091,78936411,78937990,78938279,78939258,78939798,78946426,79005219,79006654	0.933333
testis_male_adult_54_years	chr19	11033783	11033805	11033783	+	High_confidence	5	6	12	0.445584	2.913977	chr19	11033706	11034051	SINE|tRNA|LFSINE_Vert	-	chr19	11033486	11061915	SMARCA4|ENST00000538456.4	+	11033486,11034122,11034913,11041297,11058254,11059752,11060044,11061783	11033517,11034200,11035132,11041560,11058363,11059885,11060187,11061915	0.916667
testis_male_adult_54_years	chr16	74213282	74213303	74213302	-	RAMPAGE_only	7	7	12	0.445584	3.251629	chr16	74212764	74213586	LINE|L2|L2a	-	chr16	74212709	74215132	STRG.309659.1	-	74212709	74215132	0.583333
testis_male_adult_54_years	chr6	11417168	11417192	11417168	+	High_confidence	3	3	10	0.371320	2.947703	chr6	11416082	11417550	LTR|ERV1|LTR12C	-	chr6	11417349	11481239	AL445430.1|ENST00000419796.1	+	11417349,11461284,11480953	11417579,11461467,11481239	0.600000
testis_male_adult_54_years	chr10	77406523	77406524	77406523	+	High_confidence	15	17	21	0.779772	4.021928	chr10	77406452	77406601	DNA|hAT-Charlie|MER5A	-	chr10	77406479	77406885	STRG.221294.1	+	77406479	77406885	0.571429
testis_male_adult_54_years	chr4	10109088	10109114	10109089	-	RAMPAGE_only	5	8	14	0.519848	3.235926	chr4	10109060	10109263	SINE|MIR|MIRb	-	chr4	10097709	10106556	WDR1|ENST00000264785.11	-	10097709,10098991,10103895,10106428	10097891,10099139,10103986,10106556	0.928571
testis_male_adult_54_years	chr5	33794397	33794429	33794397	-	RAMPAGE_only	5	5	12	0.445584	3.459432	chr5	33793683	33794376	LINE|L1|L1PBa1	-	chr5	33576962	33840312	ADAMTS12|ENST00000504582.5	-	33576962,33588598,33595933,33614237,33615827,33624230,33630779,33637576,33641809,33643377,33648821,33649553,33658183,33661915,33683017,33683858,33751403,33840143	33577160,33588809,33596060,33614376,33616072,33624351,33630913,33637746,33641955,33643470,33648966,33649697,33658333,33662040,33683101,33684055,33751548,33840312	0.500000
testis_male_adult_54_years	chr2	206291992	206292011	206291992	+	High_confidence	4	4	10	0.371320	3.169925	chr2	206291873	206292483	LINE|L1|L1ME3A	+	chr2	206292062	206314424	ZDBF2|ENST00000611847.1	+	206292062,206297245,206304716	206292116,206297373,206314424	0.500000
testis_male_adult_54_years	chr2	186006996	186007034	186007004	-	RAMPAGE_only	6	6	28	1.039696	3.602317	chr2	186006679	186007022	LTR|ERV1|MER90a	+	chr2	186003316	186017874	STRG.53250.13	-	186003316	186017874	0.928571
testis_male_adult_54_years	chr9	39809843	39809868	39809843	-	High_confidence	2	2	14	0.519848	3.546594	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803277	39810013	STRG.201425.2	-	39803277,39809485,39809730	39803859,39809615,39810013	0.785714
testis_male_adult_54_years	chr9	15365131	15365138	15365134	-	High_confidence	25	26	63	2.339317	4.499849	chr9	15364601	15365548	LTR|ERV1|LTR12D	-	chr9	15364662	15365123	STRG.198154.1	-	15364662	15365123	0.873016
testis_male_adult_54_years	chr13	42138073	42138085	42138084	+	High_confidence	61	71	153	5.681198	5.994431	chr13	42138075	42138203	SINE|MIR|MIR3	-	chr13	42138084	42229753	DGKH|ENST00000536612.3	+	42138084,42155290,42155666,42159265,42160010,42165330,42166514,42168439,42168678,42174059,42178134,42187048,42189035,42190402,42194884,42198477,42199565,42199812,42206038,42208958,42209330,42210601,42214506,42215574,42219229,42219685,42221263,42225289,42229098	42138149,42155395,42155799,42159372,42160136,42165433,42166674,42168548,42168818,42174144,42178220,42187148,42189309,42190525,42195016,42198595,42199676,42199909,42206146,42209072,42209465,42210765,42214612,42215667,42219349,42219794,42221394,42225337,42229753	0.830065
testis_male_adult_54_years	chr9	39810023	39810094	39810033	-	High_confidence	39	39	110	4.084521	5.852676	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803277	39810013	STRG.201425.5	-	39803277,39809485	39803859,39810013	0.872727
testis_male_adult_54_years	chr1	175556969	175556999	175556998	+	High_confidence	5	6	16	0.594112	3.773557	chr1	175556780	175557372	LTR|ERVL-MaLR|MLT1F2	+	chr1	175557008	175557271	STRG.19588.1	+	175557008	175557271	0.687500
testis_male_adult_54_years	chrX	53546444	53546454	53546444	-	RAMPAGE_only	12	12	22	0.816904	4.121928	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.727273
testis_male_adult_54_years	chr5	140697980	140698019	140697980	+	RAMPAGE_only	6	6	19	0.705508	4.169925	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140691682	140699248	HARS2|ENST00000642452.1	+	140691682,140693590,140693934,140694184,140695507,140695737,140696028,140696520,140696942,140697163,140697568,140697931,140698492	140691756,140693665,140694054,140694280,140695633,140695845,140696201,140696614,140697070,140697406,140697685,140698078,140699248	0.526316
testis_male_adult_54_years	chr7	127215126	127215157	127215126	+	High_confidence	16	16	30	1.113960	4.615061	chr7	127214824	127215773	LINE|L1|L1MEd	-	chr7	127215126	127229921	AC000099.1|ENST00000413812.1	+	127215126,127219466,127228372	127215253,127219702,127229921	0.833333
testis_male_adult_54_years	chr14	28830182	28830204	28830182	-	High_confidence	26	27	107	3.973125	5.683378	chr14	28830132	28830430	SINE|Alu|AluY	-	chr14	28800083	28830204	LINC02281|ENST00000549013.1	-	28800083,28819599,28824855,28830125	28800209,28819677,28824947,28830204	0.691589
testis_male_adult_54_years	chr6	112098120	112098121	112098120	+	High_confidence	6	6	8	0.297056	2.500000	chr6	112097910	112098143	DNA|hAT-Charlie|MER20	+	chr6	112097582	112107319	STRG.149567.6	+	112097582,112099269,112100669	112098215,112099408,112107319	0.750000
testis_male_adult_54_years	chr11	112097938	112097947	112097938	+	RAMPAGE_only	5	11	16	0.594112	3.106891	chr11	112097709	112097971	LINE|L2|L2c	-	chr11	112088866	112119442	SDHD|ENST00000534010.1	+	112088866,112107544,112119291	112089011,112107708,112119442	0.812500
testis_male_adult_54_years	chr20	18379021	18379051	18379045	+	High_confidence	194	216	553	20.534002	4.896203	chr20	18379043	18379220	DNA|hAT-Charlie|MER33	+	chr20	18379048	18381484	LINC00851|NR_034167.1	+	18379048,18380778	18379069,18381484	0.985533
testis_male_adult_54_years	chr15	62690421	62690458	62690421	-	High_confidence	5	5	21	0.779772	4.037401	chr15	62689894	62691060	Retroposon|SVA|SVA_D	-	chr15	62682915	62690448	AC100839.1|ENST00000559589.1	-	62682915,62683981,62687818,62690244	62683056,62684104,62687927,62690448	0.714286
testis_male_adult_54_years	chr5	157655920	157655961	157655943	+	RAMPAGE_only	22	23	122	4.530105	5.687547	chr5	157655745	157658510	LTR|ERV1|PABL_A-int	+	chr5	157651742	157660445	STRG.131036.1	+	157651742,157657850,157658528	157655992,157658011,157660445	0.696721
testis_male_adult_54_years	chr2	119699415	119699436	119699435	+	RAMPAGE_only	6	6	10	0.371320	3.321928	chr2	119699391	119699685	LTR|ERV1|MER61A	-	chr2	119702773	119717138	STRG.44958.9	+	119702773,119704092,119715769	119704008,119704218,119717138	0.700000
testis_male_adult_54_years	chr13	18854788	18854828	18854788	-	RAMPAGE_only	15	16	62	2.302185	5.401540	chr13	18854440	18854738	SINE|Alu|AluY	-	chr13	18816717	18871967	ANKRD20A9P|ENST00000457997.1	-	18816717,18818273,18819039,18826665,18828821,18833716,18835384,18838268,18839976,18841593,18845742,18851771,18851936,18854776,18858803,18861513,18868084,18870667,18871860	18816946,18818453,18819364,18826795,18828931,18833849,18835769,18838801,18840157,18841713,18845813,18851844,18851965,18854862,18858873,18861544,18868133,18870803,18871967	0.790323
testis_male_adult_54_years	chr13	24580612	24580623	24580612	+	High_confidence	4	5	12	0.445584	3.459432	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.833333
testis_male_adult_54_years	chr1	215394414	215394453	215394414	-	High_confidence	7	7	32	1.188224	4.202820	chr1	215393981	215394963	LTR|ERV1|LTR12D	-	chr1	215393645	215394418	AL450990.1|ENST00000632868.1	-	215393645,215393958	215393767,215394418	0.906250
testis_male_adult_54_years	chr1	16894319	16894343	16894342	-	RAMPAGE_only	5	8	19	0.705508	3.616349	chr1	16894144	16894301	LINE|L1|HAL1	-	chr1	16888541	16895614	STRG.1602.1	-	16888541,16889547,16893972	16888785,16889603,16895614	0.947368
testis_male_adult_54_years	chr6	2990742	2990749	2990742	-	High_confidence	4	5	12	0.445584	2.792481	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989725	2990878	STRG.134736.3	-	2989725,2990670	2990011,2990878	0.833333
testis_male_adult_54_years	chr16	69338581	69338593	69338581	-	High_confidence	5	5	13	0.482716	3.251629	chr16	69338506	69338601	SINE|MIR|MIRb	-	chr16	69335214	69338577	COG8|ENST00000567493.1	-	69335214,69336504,69338207	69335348,69336712,69338577	0.769231
testis_male_adult_54_years	chr18	49447383	49447384	49447383	-	RAMPAGE_only	14	14	21	0.779772	3.921928	chr18	49447279	49447437	LTR|ERV1|LTR9	+	chr18	49378622	49460627	DYM|ENST00000579058.5	-	49378622,49379664,49391592,49393644,49417934,49430254,49460397	49378700,49379758,49391645,49393742,49418057,49430447,49460627	0.619048
testis_male_adult_54_years	chr5	10251089	10251144	10251143	+	High_confidence	4	4	19	0.705508	4.058814	chr5	10251081	10251143	LINE|L2|L2	-	chr5	10250536	10266412	CCT5|NM_001306156.1	+	10250536,10254144,10254673,10255954,10258110,10258385,10260791,10261559,10262480,10263133,10264655	10250893,10254205,10254838,10256153,10258303,10258535,10260911,10261745,10262618,10263314,10266412	0.526316
testis_male_adult_54_years	chr4	172156064	172156082	172156075	+	RAMPAGE_only	46	58	144	5.347010	6.242161	chr4	172155984	172156360	LTR|ERV1|MER48	-	chr4	172052444	173040100	GALNTL6|ENST00000508122.5	+	172052444,172229655,172311613,172348522,172809360,172813539,172882789,172931160,172952036,173009177,173021475,173039932	172052531,172229764,172311752,172348689,172809546,172813723,172882907,172931268,172952258,173009294,173021625,173040100	0.763889
testis_male_adult_54_years	chr14	75847824	75847825	75847824	+	RAMPAGE_only	38	45	54	2.005129	4.377942	chr14	75847754	75847919	DNA|hAT-Charlie|MER5A	-	chr14	75860384	75954823	STRG.286087.22	+	75860384,75882684,75902141,75906554,75917249,75954423	75863862,75882902,75902224,75906677,75917419,75954823	0.944444
testis_male_adult_54_years	chr2	164995115	164995156	164995115	+	RAMPAGE_only	7	9	47	1.745205	5.246282	chr2	164993938	164995321	LTR|ERV1|LTR12C	-	chr2	164992156	165208261	AC019197.1|ENST00000629817.2	+	164992156,164993460,165091119,165130044,165139598,165194895,165208112	164992168,164993640,165091299,165130204,165139709,165195083,165208261	0.638298
testis_male_adult_54_years	chr7	12556525	12556540	12556525	+	RAMPAGE_only	6	7	28	1.039696	4.392747	chr7	12555201	12556721	LTR|ERV1|LTR12C	-	chr7	12570576	12653104	SCIN|ENST00000341757.9	+	12570576,12578063,12581059,12604513,12622800,12625009,12625761,12626583,12629100,12636044,12640346,12644583,12649466,12651840,12652587	12570985,12578218,12581221,12604663,12622893,12625142,12625850,12626799,12629222,12636135,12640517,12644705,12649544,12651901,12653104	0.750000
testis_male_adult_54_years	chr9	66164688	66164713	66164688	-	High_confidence	3	3	9	0.334188	3.169925	chr9	66164559	66164946	LTR|ERV1|LOR1b	-	chr9	66159953	66164904	AL513478.2|ENST00000610400.1	-	66159953,66162050,66162812,66164294,66164565	66160229,66162202,66162887,66164440,66164904	1.000000
testis_male_adult_54_years	chr11	57794021	57794024	57794021	+	RAMPAGE_only	3	3	8	0.297056	2.521641	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.750000
testis_male_adult_54_years	chr2	135635716	135635733	135635732	+	RAMPAGE_only	8	9	16	0.594112	3.750000	chr2	135635690	135635767	SINE|MIR|MIR	+	chr2	135633711	135639114	R3HDM1|ENST00000486532.5	+	135633711,135635889,135636087,135638617,135638738,135638895	135633828,135635998,135636183,135638655,135638789,135639114	0.937500
testis_male_adult_54_years	chr9	66332862	66332896	66332892	+	RAMPAGE_only	5	5	14	0.519848	3.392747	chr9	66332633	66333090	LTR|ERV1|LTR12F	+	chr9	66330382	66335913	STRG.202918.1	+	66330382	66335913	0.928571
testis_male_adult_54_years	chr12	15348674	15348692	15348691	-	High_confidence	5	9	17	0.631244	4.000000	chr12	15348476	15348800	SINE|Alu|AluYe5	+	chr12	15346476	15348675	RERG|ENST00000437578.2	-	15346476,15348262	15346625,15348675	0.529412
testis_male_adult_54_years	chr4	138089036	138089077	138089063	+	High_confidence	95	95	412	15.298389	6.084933	chr4	138087760	138089249	LTR|ERV1|LTR12C	-	chr4	138089013	138178177	SLC7A11-AS1|ENST00000510767.5	+	138089013,138090833,138104506,138168716,138171532,138174471,138175660	138089306,138090980,138105791,138168818,138171706,138174607,138178177	0.949029
testis_male_adult_54_years	chr14	39474839	39474866	39474865	+	RAMPAGE_only	99	104	258	9.580059	6.526426	chr14	39474624	39475115	LTR|ERVL-MaLR|MLT1G1	+	chr14	39432600	39481171	STRG.280109.3	+	39432600,39470317,39479868	39432675,39474955,39481171	0.779070
testis_male_adult_54_years	chr2	10844523	10844541	10844533	+	RAMPAGE_only	3	3	10	0.371320	3.321928	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10846371	10849127	STRG.30597.1	+	10846371,10847482	10846441,10849127	0.700000
testis_male_adult_54_years	chr5	19142448	19142510	19142509	-	High_confidence	3	3	18	0.668376	3.969816	chr5	19142064	19143334	LTR|ERV1|LTR12E	-	chr5	19139958	19142482	STRG.113818.1	-	19139958	19142482	0.777778
testis_male_adult_54_years	chr7	33351946	33351997	33351946	+	RAMPAGE_only	4	4	24	0.891168	4.168296	chr7	33351872	33352111	LTR|ERV1|LTR27B	-	chr7	33344606	33605626	BBS9|ENST00000434373.3	+	33344606,33349067,33351218,33352858,33357854,33367766,33383665,33387991,33505462,33533953,33604864	33344634,33349170,33351323,33352873,33357995,33367862,33383838,33388144,33505645,33534176,33605626	0.750000
testis_male_adult_54_years	chr2	27583674	27583712	27583711	+	High_confidence	3	3	10	0.371320	3.321928	chr2	27583756	27583900	DNA|hAT-Charlie|MER3	+	chr2	27583045	27635174	AC074091.1|ENST00000505973.1	+	27583045,27598066,27599582,27599969,27601355,27602462,27603139,27607844,27615167,27616261,27617472,27621152,27629858,27631026,27631833,27632632,27634845,27635139	27583142,27598254,27599678,27600053,27601442,27602561,27603307,27608039,27615269,27616324,27617571,27621262,27629952,27631066,27631900,27632670,27634924,27635174	0.600000
testis_male_adult_54_years	chr1	153119468	153119469	153119468	-	RAMPAGE_only	15	15	16	0.594112	3.456565	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112113	153113515	SPRR2F|ENST00000468739.1	-	153112113,153113473	153112752,153113515	0.937500
testis_male_adult_54_years	chr3	132047226	132047238	132047226	+	High_confidence	4	4	10	0.371320	3.121928	chr3	132047043	132047527	LTR|ERVL-MaLR|MLT1H	+	chr3	132047584	132055576	STRG.77937.1	+	132047584,132055201	132047847,132055576	0.500000
testis_male_adult_54_years	chr7	4926798	4926807	4926798	-	RAMPAGE_only	2	3	8	0.297056	3.000000	chr7	4926733	4927043	SINE|Alu|AluY	-	chr7	4905988	4959191	MMD2|ENST00000406755.5	-	4905988,4909728,4909880,4911144,4916004,4920170,4925450,4958970	4907599,4909778,4909950,4911246,4916079,4920331,4925532,4959191	0.625000
testis_male_adult_54_years	chr22	26154351	26154368	26154367	-	High_confidence	9	13	24	0.891168	4.061482	chr22	26154334	26154498	DNA|hAT-Charlie|MER5A	+	chr22	26154068	26154380	STRG.354177.1	-	26154068	26154380	0.583333
testis_male_adult_54_years	chr4	497593	497594	497593	-	High_confidence	6	6	8	0.297056	2.750000	chr4	497423	497610	LTR|ERV1|MER4A1	-	chr4	429492	498208	STRG.87575.4	-	429492,435769,437445,472574,497126	430695,435879,444432,472701,498208	1.000000
testis_male_adult_54_years	chr14	35121261	35121278	35121277	+	High_confidence	58	58	121	4.492973	5.807612	chr14	35121096	35121392	SINE|Alu|AluSx4	+	chr14	35121275	35123304	STRG.279641.11	+	35121275,35122951	35121482,35123304	0.710744
testis_male_adult_54_years	chr7	5794534	5794594	5794558	+	High_confidence	6	6	27	1.002564	4.373661	chr7	5793408	5794887	LTR|ERV1|LTR12C	+	chr7	5794492	5816387	STRG.157814.5	+	5794492,5815733,5816197	5794887,5815875,5816387	0.777778
testis_male_adult_54_years	chrX	109761018	109761019	109761018	-	RAMPAGE_only	5	5	8	0.297056	2.750000	chrX	109760494	109761733	LINE|L1|L1MCa	+	chrX	109641329	109733403	ACSL4|NM_001318509.1	-	109641329,109659353,109661530,109663210,109665419,109668100,109669033,109674401,109677987,109678264,109680997,109681265,109682718,109683135,109696143,109733138	109644186,109659511,109661645,109663402,109665494,109668273,109669173,109674473,109678111,109678415,109681136,109681375,109682896,109683666,109696196,109733403	0.625000
testis_male_adult_54_years	chr7	35647224	35647230	35647224	-	RAMPAGE_only	2	2	9	0.334188	2.500000	chr7	35647142	35647498	LINE|L2|L2c	+	chr7	35634311	35668579	HERPUD2|ENST00000426180.1	-	35634311,35635134,35638349,35667433,35668542	35634429,35635458,35638472,35667588,35668579	0.555556
testis_male_adult_54_years	chr14	88036903	88036958	88036936	+	High_confidence	41	44	95	3.527541	5.803449	chr14	88036935	88037113	DNA|hAT-Charlie|MER103C	+	chr14	88036936	88038200	STRG.287356.4	+	88036936	88038200	0.694737
testis_male_adult_54_years	chr10	103100789	103100834	103100811	+	RAMPAGE_only	6	7	38	1.411016	4.361052	chr10	103100657	103100952	SINE|tRNA|LFSINE_Vert	+	chr10	103102645	103103190	STRG.224961.1	+	103102645	103103190	0.657895
testis_male_adult_54_years	chr4	67152325	67152378	67152377	-	High_confidence	8	8	18	0.668376	3.614369	chr4	67151698	67152983	LTR|ERV1|LTR12C	+	chr4	67151368	67151973	STRG.95674.1	-	67151368	67151973	0.666667
testis_male_adult_54_years	chr1	82776332	82776333	82776332	-	High_confidence	84	84	90	3.341881	4.779301	chr1	82775919	82777347	LTR|ERV1|LTR12C	-	chr1	82775990	82776326	STRG.10748.1	-	82775990	82776326	0.800000
testis_male_adult_54_years	chr3	194069544	194069567	194069544	-	High_confidence	10	10	33	1.225356	4.760648	chr3	194069490	194069828	LTR|ERVL-MaLR|MLT1A	+	chr3	194048912	194069529	LOC285389|NR_136181.1	-	194048912,194053764,194057636,194069315	194049371,194055585,194057815,194069529	0.636364
testis_male_adult_54_years	chr11	30912111	30912154	30912111	+	RAMPAGE_only	6	8	28	1.039696	4.351823	chr11	30911903	30912279	LTR|ERVL-MaLR|MSTC	+	chr11	30921746	30922311	STRG.232705.1	+	30921746	30922311	0.535714
testis_male_adult_54_years	chr11	21262600	21262603	21262600	-	High_confidence	9	9	15	0.556980	3.324863	chr11	21261754	21263996	LINE|L1|HAL1	-	chr11	21260060	21262570	AC090857.2|ENST00000526362.1	-	21260060,21262537	21260750,21262570	0.666667
testis_male_adult_54_years	chr14	66111587	66111633	66111609	+	High_confidence	18	18	100	3.713201	5.905232	chr14	66111512	66111769	LTR|ERVL-MaLR|MLT1K	-	chr14	66111630	66123759	LINC02290|ENST00000556291.5	+	66111630,66117907,66123143,66123660	66111771,66118054,66123313,66123759	0.610000
testis_male_adult_54_years	chr9	138061257	138061277	138061276	+	RAMPAGE_only	5	5	17	0.631244	3.875000	chr9	138060882	138061551	LTR|ERVL|HERV16-int	-	chr9	137877933	138067109	STRG.212796.6	+	137877933,137879053,137913179,137914653,137917240,137952273,137955697,137956770,137957597,137971382,137975906,137984137,137986412,137986781,138006766,138010009,138013128,138023013,138024954,138043773,138046903,138047398,138049208,138052091,138053845,138057731,138058048,138058568,138059078,138059653	137878217,137879159,137913271,137914806,137917431,137952377,137955813,137956827,137957687,137971592,137976019,137984250,137986544,137986854,138006884,138010077,138013235,138023811,138025172,138043900,138047033,138047458,138049315,138052188,138054006,138057869,138058250,138058733,138059189,138067109	0.882353
testis_male_adult_54_years	chr10	80860279	80860280	80860279	+	High_confidence	57	57	57	2.116525	4.957902	chr10	80859051	80860696	LTR|ERV1|LTR12C	+	chr10	80860292	80860753	STRG.222123.1	+	80860292	80860753	0.859649
testis_male_adult_54_years	chr9	113303782	113303812	113303782	-	High_confidence	3	3	8	0.297056	2.521641	chr9	113303607	113303809	SINE|MIR|MIRb	+	chr9	113302100	113303376	RNF183|ENST00000443976.1	-	113302100,113303055	113302313,113303376	0.500000
testis_male_adult_54_years	chr6	143569338	143569355	143569346	-	High_confidence	112	112	270	10.025643	6.843665	chr6	143569122	143569483	LTR|ERVL-MaLR|MLT1J2	+	chr6	143554114	143569339	PHACTR2-AS1|NR_027113.2	-	143554114,143557998,143568859	143555230,143558131,143569339	0.614815
testis_male_adult_54_years	chr7	116181544	116181557	116181546	-	High_confidence	169	204	428	15.892501	6.048532	chr7	116181127	116182476	LTR|ERV1|LTR12C	-	chr7	115984134	116181581	STRG.171909.2	-	115984134,116110707,116111991,116170764,116181078	115984513,116110955,116112038,116170881,116181581	0.955607
testis_male_adult_54_years	chr1	111608308	111608319	111608312	-	High_confidence	3	3	8	0.297056	2.807355	chr1	111607038	111608899	Retroposon|SVA|SVA_D	-	chr1	111599006	111608318	LINC01160|NR_034126.1	-	111599006,111602191,111604368,111604628,111608135	111600095,111602255,111604500,111604702,111608318	0.875000
testis_male_adult_54_years	chr1	26467553	26467567	26467566	-	High_confidence	3	3	9	0.334188	3.169925	chr1	26467563	26467643	SINE|MIR|MIRc	+	chr1	26462755	26467537	LOC101928324|NR_125952.1	-	26462755,26463375,26466203,26467047	26462870,26463433,26466324,26467537	0.888889
testis_male_adult_54_years	chr13	43078349	43078351	43078350	+	RAMPAGE_only	6	11	14	0.519848	3.238901	chr13	43078274	43078372	SINE|MIR|MIR3	-	chr13	43055086	43114080	STRG.267280.2	+	43055086,43065685,43068929,43078611,43085767,43107177	43062295,43065737,43069003,43078688,43085838,43114080	0.928571
testis_male_adult_54_years	chr17	49833522	49833528	49833527	+	RAMPAGE_only	3	3	8	0.297056	3.000000	chr17	49833560	49833865	LTR|ERVL-MaLR|MLT1H2	+	chr17	49788554	49835030	KAT7|ENST00000259021.8	+	49788554,49791885,49796749,49798318,49805362,49809118,49811475,49815802,49817819,49821336,49821649,49823201,49825999,49826692,49827400	49788849,49792033,49796926,49798558,49805445,49809208,49811574,49815913,49818011,49821426,49821790,49823295,49826146,49826799,49835030	1.000000
testis_male_adult_54_years	chr17	8760294	8760295	8760294	+	High_confidence	6	6	8	0.297056	2.500000	chr17	8760259	8760449	SINE|Alu|AluJb	+	chr17	8760237	8762311	STRG.313656.2	+	8760237	8762311	0.875000
testis_male_adult_54_years	chr16	50742584	50742605	50742584	+	High_confidence	2	2	7	0.259924	2.521641	chr16	50742553	50742585	SINE|MIR|MIR1_Amn	-	chr16	50742759	50801935	CYLD|ENST00000427738.7	+	50742759,50749575,50751603,50754318,50775165,50776178,50777824,50779664,50781245,50782324,50784328,50786854,50787785,50791557,50792596,50793545,50794211,50796323	50742841,50750202,50751906,50754424,50775174,50776277,50777941,50780044,50781411,50782466,50784451,50786946,50787852,50791690,50792705,50793664,50794428,50801935	1.000000
testis_male_adult_54_years	chr2	110181009	110181073	110181056	-	RAMPAGE_only	20	20	78	2.896297	5.272662	chr2	110180528	110183130	LINE|L1|L1PA10	+	chr2	110123707	110204972	NPHP1|ENST00000355301.8	-	110123707,110125636,110129185,110131678,110143541,110144492,110146752,110147915,110150181,110160126,110161602,110163047,110164687,110165051,110168451,110169805,110201420,110204899	110124063,110125681,110129259,110131791,110143641,110144569,110146835,110148026,110150256,110160255,110161697,110163132,110164730,110165155,110168553,110169998,110201494,110204972	0.884615
testis_male_adult_54_years	chr5	7329502	7329516	7329515	+	High_confidence	5	8	16	0.594112	3.773557	chr5	7328251	7330976	DNA|TcMar-Tigger|Tigger4	+	chr5	7328619	7330772	STRG.111995.1	+	7328619	7330772	0.812500
testis_male_adult_54_years	chr12	122893400	122893406	122893405	-	RAMPAGE_only	5	5	9	0.334188	2.750000	chr12	122893227	122893452	SINE|MIR|MIRb	-	chr12	122867153	122896127	VPS37B|ENST00000535765.5	-	122867153,122868479,122870889,122895951	122867607,122868562,122871055,122896127	0.777778
testis_male_adult_54_years	chr3	129431950	129431951	129431950	+	High_confidence	18	18	25	0.928300	3.855389	chr3	129431910	129431961	LINE|RTE-BovB|MamRTE1	-	chr3	129431809	129432658	STRG.77738.1	+	129431809	129432658	0.880000
testis_male_adult_54_years	chr1	11609505	11609506	11609505	+	High_confidence	162	163	170	6.312442	5.050762	chr1	11608568	11609920	LTR|ERV1|LTR12C	+	chr1	11609530	11613355	LINC01647|ENST00000453135.1	+	11609530,11611842,11612789	11610113,11611978,11613355	0.947059
testis_male_adult_54_years	chr12	105233177	105233220	105233219	-	High_confidence	6	10	34	1.262488	5.087463	chr12	105233175	105233274	LINE|L2|L2c	+	chr12	105177109	105233154	APPL2|ENST00000547809.5	-	105177109,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105233090	105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105233154	0.882353
testis_male_adult_54_years	chr6	17729561	17729562	17729561	+	High_confidence	30	30	30	1.113960	4.481728	chr6	17728590	17729824	LTR|ERV1|LTR12C	+	chr6	17729572	17732210	STRG.137278.1	+	17729572	17732210	1.000000
testis_male_adult_54_years	chr13	47950084	47950106	47950084	-	High_confidence	5	5	12	0.445584	3.418296	chr13	47949998	47950469	LTR|ERVL|LTR47A2	+	chr13	47936490	47949561	SUCLA2|ENST00000493152.6	-	47936490,47943344,47948939,47949482	47936773,47943445,47949028,47949561	0.833333
testis_male_adult_54_years	chr6	119201662	119201705	119201662	-	RAMPAGE_only	7	7	23	0.854036	3.882045	chr6	119201512	119201642	LINE|L2|L2a	-	chr6	119177208	119349761	MAN1A1|ENST00000368468.3	-	119177208,119180311,119188404,119189663,119193776,119201253,119204758,119248259,119290682,119301987,119306895,119348462,119349541	119179945,119180427,119188577,119189883,119193892,119201347,119204882,119248354,119290763,119302103,119306992,119349287,119349761	0.913043
testis_male_adult_54_years	chr10	101237595	101237638	101237637	+	High_confidence	55	69	196	7.277874	5.540750	chr10	101237625	101237761	SINE|MIR|MIRc	+	chr10	101238002	101238859	LBX1-AS1|ENST00000456391.1	+	101238002,101238230,101238519	101238047,101238266,101238859	0.765306
testis_male_adult_54_years	chr17	10791916	10791917	10791916	-	High_confidence	8	9	11	0.408452	2.921928	chr17	10791602	10791881	SINE|Alu|AluSp	-	chr17	10787277	10791724	STRG.313959.1	-	10787277,10791527	10787524,10791724	0.636364
testis_male_adult_54_years	chr4	4585822	4585845	4585833	+	High_confidence	5	6	13	0.482716	3.251629	chr4	4585405	4585928	LTR|ERVL-MaLR|MLT1A0-int	+	chr4	4584955	4588284	STRG.88153.1	+	4584955	4588284	0.923077
testis_male_adult_54_years	chr12	55534916	55534931	55534916	-	RAMPAGE_only	2	3	8	0.297056	2.500000	chr12	55534053	55536858	LINE|L1|L1PBa1	+	chr12	55434756	55493179	AC122685.1|ENST00000554049.1	-	55434756,55476548,55493090	55435131,55476601,55493179	0.625000
testis_male_adult_54_years	chr8	124171968	124172015	124171968	-	High_confidence	3	3	15	0.556980	3.807355	chr8	124171962	124172008	LTR|ERVL|LTR32	+	chr8	124046070	124171522	FER1L6-AS2|NR_103547.1	-	124046070,124047556,124058787,124060167,124171427	124046776,124047693,124058972,124060792,124171522	0.733333
testis_male_adult_54_years	chr20	37744620	37744659	37744640	+	High_confidence	42	42	176	6.535234	6.826368	chr20	37744532	37744694	DNA|hAT-Charlie|MER117	+	chr20	37744644	37872129	CTNNBL1|ENST00000373473.5	+	37744644,37746467,37765196,37767952,37777344,37777653,37779186,37802866,37840101,37842338,37859898,37860271,37871924	37744713,37746647,37765290,37768044,37777417,37777712,37779335,37803048,37840199,37842419,37860036,37860344,37872129	0.750000
testis_male_adult_54_years	chr12	79727750	79727766	79727750	+	High_confidence	79	79	115	4.270181	6.085757	chr12	79726976	79730146	LINE|L1|L1MD1	+	chr12	79726849	79731017	STRG.257017.1	+	79726849	79731017	0.773913
testis_male_adult_54_years	chr3	33372889	33372909	33372889	-	High_confidence	4	4	9	0.334188	3.000000	chr3	33372844	33373009	DNA|hAT-Charlie|MER5A1	+	chr3	33371879	33372906	STRG.65502.1	-	33371879	33372906	0.777778
testis_male_adult_54_years	chr5	137128143	137128163	137128162	+	High_confidence	13	14	27	1.002564	4.384517	chr5	137127974	137128333	LTR|ERVL-MaLR|MLT1A0	+	chr5	137128174	137131021	STRG.128269.2	+	137128174,137130689	137128260,137131021	0.592593
testis_male_adult_54_years	chr22	42138237	42138255	42138237	+	High_confidence	2	2	8	0.297056	2.807355	chr22	42138117	42139675	LTR|ERV1|LTR12C	+	chr22	42138059	42139726	AC254562.3|ENST00000626627.1	+	42138059,42139318	42138282,42139726	0.500000
testis_male_adult_54_years	chr3	44899023	44899043	44899042	-	High_confidence	8	9	40	1.485280	5.221928	chr3	44898991	44899100	SINE|MIR|MIRb	+	chr3	44898341	44899024	STRG.66881.1	-	44898341	44899024	0.650000
testis_male_adult_54_years	chr7	113017810	113017828	113017810	-	High_confidence	6	6	18	0.668376	3.969816	chr7	113017159	113018654	LTR|ERV1|LTR12C	+	chr7	113016895	113017813	STRG.171474.1	-	113016895	113017813	0.777778
testis_male_adult_54_years	chr17	34890072	34890099	34890098	-	High_confidence	7	8	25	0.928300	4.262692	chr17	34889951	34890312	LINE|L2|L2c	+	chr17	34882304	34890967	STRG.315788.1	-	34882304	34890967	0.880000
testis_male_adult_54_years	chr4	55996925	55996930	55996925	+	RAMPAGE_only	33	34	52	1.930865	5.343898	chr4	55996922	55997021	SINE|MIR|MIRc	-	chr4	55967147	56033104	STRG.94743.4	+	55967147,55971269,55974745,55980142,55981226,55985280,55991933,55999301,56008326,56009734,56011411,56011799,56017647,56019352,56020675,56024500,56031359	55969128,55971408,55974969,55980295,55981379,55985358,55992085,55999645,56008382,56009903,56011522,56011985,56017857,56019555,56020780,56024614,56033104	0.961538
testis_male_adult_54_years	chr2	195546919	195546965	195546919	-	High_confidence	109	116	298	11.065339	4.434302	chr2	195546499	195547866	LTR|ERV1|LTR12C	-	chr2	195399233	195546932	STRG.55089.2	-	195399233,195546490	195399504,195546932	0.976510
testis_male_adult_54_years	chr13	32503848	32503880	32503865	-	RAMPAGE_only	9	11	76	2.822033	4.999360	chr13	32503763	32504021	SINE|Alu|AluJr4	+	chr13	32432786	32490140	N4BP2L2|ENST00000503296.6	-	32432786,32436360,32438651,32442387,32477886,32480589,32490091	32432972,32436405,32438737,32444126,32478048,32480637,32490140	0.947368
testis_male_adult_54_years	chr11	35269021	35269043	35269021	-	RAMPAGE_only	5	5	11	0.408452	3.277613	chr11	35268972	35269342	LTR|ERVL-MaLR|MLT1A0	+	chr11	35254420	35265745	SLC1A2|ENST00000464522.2	-	35254420,35265526	35254808,35265745	0.818182
testis_male_adult_54_years	chr1	88466986	88467011	88467010	-	High_confidence	21	23	43	1.596676	4.665312	chr1	88466875	88468359	LTR|ERV1|LTR12C	+	chr1	88464414	88466732	STRG.11980.1	-	88464414	88466732	0.558140
testis_male_adult_54_years	chr3	32626724	32626762	32626761	+	High_confidence	4	4	9	0.334188	3.169925	chr3	32625470	32627136	LTR|ERV1|LTR12C	+	chr3	32626649	32637620	STRG.65445.1	+	32626649,32637347	32627240,32637620	0.888889
testis_male_adult_54_years	chr7	92477649	92477677	92477649	+	RAMPAGE_only	91	92	143	5.309878	6.315500	chr7	92477412	92478192	LTR|ERV1|LTR17	-	chr7	92490084	92491579	AC007566.1|ENST00000441539.1	+	92490084,92491242	92490142,92491579	0.636364
testis_male_adult_54_years	chr10	120434800	120434822	120434808	+	High_confidence	4	4	12	0.445584	3.277613	chr10	120434730	120435298	LINE|L1|L1MC5a	+	chr10	120434982	120440376	AC073587.1|ENST00000447093.1	+	120434982,120436012,120436500,120439264,120439675,120440200	120435015,120436118,120436582,120439586,120439832,120440376	0.583333
testis_male_adult_54_years	chr12	127983379	127983413	127983393	-	High_confidence	12	12	36	1.336752	4.135565	chr12	127983198	127984510	LTR|ERV1|LTR12C	+	chr12	127940594	127983857	STRG.263340.4	-	127940594,127983066	127940735,127983857	0.833333
testis_male_adult_54_years	chr3	172867572	172867573	172867572	+	High_confidence	293	295	339	12.587752	6.495661	chr3	172866600	172867986	LTR|ERV1|LTR12C	+	chr3	172867463	172873644	STRG.83393.1	+	172867463,172871382,172873458	172868204,172871527,172873644	0.976401
testis_male_adult_54_years	chr21	34087755	34087766	34087765	+	RAMPAGE_only	24	32	54	2.005129	5.209867	chr21	34087381	34088035	LINE|L2|L2a	-	chr21	34073569	34143034	STRG.351046.5	+	34073569,34094862,34142407	34073745,34125480,34143034	0.796296
testis_male_adult_54_years	chr5	151687282	151687283	151687282	-	High_confidence	5	5	7	0.259924	2.584963	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.857143
testis_male_adult_54_years	chr19	49808145	49808146	49808145	-	High_confidence	4	4	7	0.259924	2.521641	chr19	49807976	49808169	SINE|MIR|MIR	+	chr19	49806884	49808639	FUZ|ENST00000529634.2	-	49806884,49808114,49808413,49808573	49807374,49808159,49808491,49808639	1.000000
testis_male_adult_54_years	chr18	11431994	11431995	11431994	-	High_confidence	71	74	97	3.601805	5.946585	chr18	11431680	11432845	LTR|ERV1|LTR12E	-	chr18	11429481	11431985	STRG.324314.2	-	11429481	11431985	0.762887
testis_male_adult_54_years	chr1	165213279	165213280	165213279	-	High_confidence	6	6	6	0.222792	2.584963	chr1	165213107	165213286	LINE|L1|L1ME1	+	chr1	165203407	165213280	LMX1A|ENST00000489443.2	-	165203407,165205863,165207481,165208062,165210698,165212958,165213207	165204040,165206034,165207614,165208132,165210776,165213055,165213280	0.500000
testis_male_adult_54_years	chr5	80309500	80309501	80309500	-	High_confidence	13	13	13	0.482716	3.700440	chr5	80309207	80310506	LTR|ERV1|LTR12C	-	chr5	80308589	80309835	STRG.120274.1	-	80308589	80309835	0.846154
testis_male_adult_54_years	chrX	44283503	44283504	44283503	-	High_confidence	9	9	14	0.519848	3.467720	chrX	44283187	44283481	SINE|Alu|AluY	-	chrX	44112141	44282572	STRG.362329.1	-	44112141,44146408,44148780,44163921,44176291,44178366,44229648,44232480,44235304,44242120,44248271,44248802,44250193,44261074,44272685,44282029	44112223,44146463,44148896,44164027,44176384,44178564,44229779,44232677,44235447,44242289,44248410,44248916,44250445,44261298,44272836,44282572	1.000000
testis_male_adult_54_years	chr10	45674041	45674051	45674050	-	RAMPAGE_only	3	3	8	0.297056	2.521641	chr10	45673989	45674078	SINE|MIR|MIRb	+	chr10	45615500	45672813	ZFAND4|NM_001128324.2	-	45615500,45618139,45624582,45625950,45639815,45648293,45651965,45652983,45663541,45672678	45616571,45618260,45624637,45627105,45639963,45648534,45652033,45653059,45663842,45672813	0.875000
testis_male_adult_54_years	chr5	29880508	29880509	29880508	+	High_confidence	6	6	9	0.334188	2.750000	chr5	29880240	29880971	LINE|L1|L1MA6	-	chr5	29880559	29882103	LOC105374704|NR_134264.1	+	29880559,29881767	29880613,29882103	0.888889
testis_male_adult_54_years	chr16	72627761	72627775	72627774	-	RAMPAGE_only	3	3	11	0.408452	3.321928	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72420535	72664949	STRG.309266.9	-	72420535,72426138,72522552,72523331,72540577,72555264,72570434,72664891	72424956,72427457,72522623,72523415,72540611,72555326,72570515,72664949	0.636364
testis_male_adult_54_years	chr6	49699827	49699857	49699829	-	RAMPAGE_only	8	14	29	1.076828	4.680813	chr6	49699766	49699821	LINE|L2|L2c	-	chr6	49692359	49713561	CRISP2|ENST00000339139.4	-	49692359,49695835,49697859,49698361,49699803,49700667,49709130,49711284,49712500,49713474	49692900,49695924,49697957,49698507,49699891,49700784,49709205,49711321,49712604,49713561	0.827586
testis_male_adult_54_years	chr9	115743857	115743864	115743863	-	High_confidence	9	10	15	0.556980	3.324863	chr9	115743858	115744555	LTR|ERV1|MER50B	-	chr9	115739221	115743864	AL691420.1|ENST00000642165.1	-	115739221,115741461,115742814,115743779	115739874,115741562,115743070,115743864	0.733333
testis_male_adult_54_years	chr11	77175226	77175303	77175302	+	High_confidence	12	12	41	1.522412	4.851335	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.951220
testis_male_adult_54_years	chr6	127330900	127330973	127330900	-	High_confidence	5	6	35	1.299620	4.479143	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.971429
testis_male_adult_54_years	chr16	86345629	86345654	86345652	-	High_confidence	178	313	553	20.534002	7.608035	chr16	86345432	86345869	LINE|L2|L2a	+	chr16	86331843	86345644	LINC00917|ENST00000594203.5	-	86331843,86332958,86333687,86337360,86338749,86345491	86332678,86333044,86333907,86338661,86338832,86345644	0.602170
testis_male_adult_54_years	chr7	43881915	43881928	43881927	-	High_confidence	3	3	8	0.297056	2.750000	chr7	43881785	43881943	LINE|L2|L2	+	chr7	43878943	43881896	URGCP|ENST00000467410.1	-	43878943,43881658	43879260,43881896	0.875000
testis_male_adult_54_years	chr1	109010931	109010966	109010931	-	RAMPAGE_only	2	2	14	0.519848	3.182006	chr1	109010578	109010881	SINE|Alu|AluY	-	chr1	108970217	109006743	STRG.14252.14	-	108970217,108974535,108981732,108982608,108986522,108991253,108995579,109002223,109004591	108971572,108974754,108981864,108983451,108986680,108991329,108995837,109002402,109006743	1.000000
testis_male_adult_54_years	chr11	97667878	97667879	97667878	+	High_confidence	44	44	59	2.190789	5.552188	chr11	97666908	97668296	LTR|ERV1|LTR12C	+	chr11	97667886	97673746	STRG.240274.1	+	97667886,97673684	97668304,97673746	0.881356
testis_male_adult_54_years	chr5	54648658	54648665	54648658	-	High_confidence	29	30	98	3.638937	4.999251	chr5	54648319	54649572	LTR|ERV1|LTR12C	-	chr5	54646515	54648700	STRG.117413.2	-	54646515	54648700	0.755102
testis_male_adult_54_years	chr19	48589072	48589123	48589122	+	RAMPAGE_only	2	3	9	0.334188	2.947703	chr19	48588603	48589545	LINE|L2|L2a	-	chr19	48591100	48599274	SULT2B1|ENST00000594274.1	+	48591100,48591608,48592721,48596738,48599134	48591273,48591735,48592816,48596919,48599274	0.888889
testis_male_adult_54_years	chr1	20775862	20775893	20775862	-	RAMPAGE_only	9	11	22	0.816904	3.748995	chr1	20775005	20775936	DNA|TcMar-Tigger|Tigger3b	+	chr1	20775449	20780541	HP1BP3|ENST00000487117.1	-	20775449,20779811,20780344	20776750,20779911,20780541	0.818182
testis_male_adult_54_years	chr1	6208681	6208682	6208681	-	High_confidence	86	86	89	3.304749	4.333924	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.966292
testis_male_adult_54_years	chr5	60531113	60531114	60531113	+	High_confidence	34	34	38	1.411016	4.548688	chr5	60530137	60531530	LTR|ERV1|LTR12C	+	chr5	60531079	60531516	STRG.118335.1	+	60531079	60531516	0.605263
testis_male_adult_54_years	chr1	14419972	14419973	14419972	-	High_confidence	146	146	176	6.535234	5.655332	chr1	14419527	14421085	LTR|ERV1|LTR12C	-	chr1	14382489	14419991	STRG.1816.4	-	14382489,14390685,14419493	14388341,14391578,14419991	0.937500
testis_male_adult_54_years	chr21	28090339	28090340	28090339	+	High_confidence	6	6	6	0.222792	2.584963	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	1.000000
testis_male_adult_54_years	chr13	54799642	54799643	54799642	+	RAMPAGE_only	13	13	14	0.519848	3.180833	chr13	54799141	54800235	LTR|ERV1|LTR12E	-	chr13	54797051	54898514	STRG.268884.1	+	54797051,54800654,54898223	54800259,54800815,54898514	0.857143
testis_male_adult_54_years	chr1	151451011	151451013	151451011	-	RAMPAGE_only	3	5	7	0.259924	2.584963	chr1	151450922	151451133	SINE|Alu|AluSz	+	chr1	151430713	151458681	STRG.16976.11	-	151430713,151440927,151442080,151442304	151430841,151441086,151442205,151458681	0.857143
testis_male_adult_54_years	chr7	106285343	106285352	106285351	-	High_confidence	4	4	9	0.334188	2.947703	chr7	106285213	106285391	LINE|L1|L1M4b	-	chr7	106248284	106285192	NAMPT|NM_005746.2	-	106248284,106253016,106254363,106261587,106263391,106268463,106269153,106272529,106274945,106277022,106284827	106251193,106253151,106254504,106261707,106263617,106268600,106269312,106272658,106275049,106277179,106285192	1.000000
testis_male_adult_54_years	chr1	113069478	113069487	113069478	+	RAMPAGE_only	2	3	7	0.259924	2.584963	chr1	113068816	113070035	Retroposon|SVA|SVA_F	+	chr1	113073169	113125202	LRIG2|NM_001312686.1	+	113073169,113091317,113092028,113093205,113093429,113094338,113094611,113095873,113096221,113098704,113100210,113100419,113107593,113110241,113112478,113114426,113116286,113119232,113123874	113073645,113091383,113092140,113093280,113093564,113094482,113094755,113096017,113096365,113098785,113100282,113100488,113107757,113110562,113112760,113114876,113116436,113119523,113125202	0.714286
testis_male_adult_54_years	chr11	8663298	8663299	8663298	-	RAMPAGE_only	8	10	12	0.445584	2.550341	chr11	8663272	8663300	LINE|L1|L1MA8	+	chr11	8610131	8666353	STRG.230034.4	-	8610131,8618749,8619382,8620049,8620445,8621031,8621644,8622815,8624358,8624712,8638653,8640226,8643008,8645740,8646446,8647969,8648415,8649739,8651799	8618003,8618968,8619535,8620124,8620572,8621321,8621819,8622876,8624551,8625228,8638815,8641152,8643126,8645887,8646561,8648086,8648548,8649887,8666353	0.916667
testis_male_adult_54_years	chr12	130506906	130506919	130506906	-	RAMPAGE_only	13	16	55	2.042261	5.322076	chr12	130506824	130507447	LTR|ERVL-MaLR|MLT1K	+	chr12	130431646	130517917	RIMBP2|ENST00000535703.6	-	130431646,130434733,130436841,130438364,130441847,130445159,130450199,130451194,130456495,130470692,130471749,130478911,130506647,130517827	130432273,130434880,130437291,130438516,130442660,130445269,130450276,130451340,130456700,130470743,130472338,130479016,130506770,130517917	0.509091
testis_male_adult_54_years	chr5	36001010	36001037	36001026	-	High_confidence	20	22	87	3.230485	5.939354	chr5	36000067	36001700	LTR|ERV1|PRIMA4-int	+	chr5	35960755	36001028	UGT3A1|NM_001171873.1	-	35960755,35965385,35968018,35988449,35997238,36000967	35962951,35965917,35968133,35988551,35997329,36001028	0.850575
testis_male_adult_54_years	chr19	11829726	11829734	11829726	+	High_confidence	10	11	29	1.076828	4.280395	chr19	11829681	11829843	SINE|Alu|AluSc8	+	chr19	11829985	11831678	ZNF440|ENST00000414255.1	+	11829985,11830616,11831367	11830409,11830677,11831678	0.965517
testis_male_adult_54_years	chr2	233775642	233775675	233775650	+	High_confidence	21	40	85	3.156221	6.132805	chr2	233775484	233775739	LTR|ERVL-MaLR|MLT1O	-	chr2	233775643	233824570	STRG.59536.1	+	233775643,233779344,233779670,233789496,233789851,233792795,233793672,233795652,233795966,233796199,233798773,233799779,233800204,233802167,233803447,233804050,233804494,233805003,233807422,233807732,233809125,233810793,233811879,233813669,233814581,233816780,233818001,233818651,233819316,233819901,233822123,233822362,233822880,233823555	233775757,233779452,233779852,233789628,233790014,233792894,233794506,233795745,233796045,233796313,233798850,233799899,233800315,233802315,233803488,233804192,233804547,233805111,233807542,233807855,233809278,233810916,233811959,233813778,233814677,233816885,233818125,233818770,233819469,233820056,233822283,233822556,233823018,233824570	0.858824
testis_male_adult_54_years	chr4	4611618	4611666	4611665	+	RAMPAGE_only	15	15	72	2.673505	5.711320	chr4	4611518	4611692	LINE|L2|L2b	+	chr4	4542203	4710938	STX18-AS1|ENST00000610009.5	+	4542203,4544737,4648976,4649372,4705672,4709515	4542475,4544907,4649109,4649542,4705910,4710938	0.541667
testis_male_adult_54_years	chr7	42888092	42888109	42888104	+	High_confidence	3	5	14	0.519848	3.378783	chr7	42888107	42888184	LTR|ERVL|MER54B	+	chr7	42888778	42889567	STRG.163265.1	+	42888778	42889567	1.000000
testis_male_adult_54_years	chr9	121080430	121080443	121080442	+	RAMPAGE_only	3	3	8	0.297056	2.807355	chr9	121080464	121080517	SINE|MIR|MIRb	+	chr9	121075011	121177608	CNTRL|ENST00000373855.5	+	121075011,121080305,121088295,121090274,121094887,121096421,121098385,121107801,121112458,121113501,121115090,121118345,121123930,121125715,121135805,121138544,121140640,121141380,121142090,121143902,121144842,121145243,121146107,121148671,121150169,121152484,121154720,121157469,121157739,121157982,121158854,121160142,121161855,121162053,121164942,121166106,121167488,121168095,121169610,121171407,121173242,121173674,121175017,121177162	121075067,121080478,121088543,121090405,121095018,121096563,121098572,121107995,121112578,121113724,121115200,121118540,121124084,121125936,121135982,121138679,121140786,121141588,121142270,121144082,121144959,121145385,121146256,121148861,121150483,121152693,121154913,121157600,121157880,121158109,121159019,121160302,121161971,121162271,121165100,121166180,121167677,121168321,121169816,121171548,121173509,121173737,121175224,121177608	0.625000
testis_male_adult_54_years	chr11	126106875	126106907	126106906	+	High_confidence	52	54	123	4.567237	6.062734	chr11	126106829	126107257	LTR|ERVL-MaLR|MLT1E2	+	chr11	126106912	126108057	STRG.244793.1	+	126106912	126108057	0.731707
testis_male_adult_54_years	chr22	24256797	24256798	24256797	+	RAMPAGE_only	27	28	28	1.039696	4.458591	chr22	24256728	24256802	LINE|L1|L1M3e	+	chr22	24251017	24265525	STRG.354062.2	+	24251017,24257996,24258766,24260907,24261692,24263499	24257710,24258059,24258873,24261036,24262607,24265525	0.964286
testis_male_adult_54_years	chr7	119611501	119611502	119611501	-	High_confidence	7	7	9	0.334188	3.169925	chr7	119611477	119611928	LTR|ERVL|MER54A	+	chr7	119610888	119611952	STRG.172381.1	-	119610888	119611952	0.888889
testis_male_adult_54_years	chr12	85026478	85026499	85026478	+	RAMPAGE_only	6	7	25	0.928300	4.523562	chr12	85026445	85026532	LTR|Gypsy|MamGypLTR1b	+	chr12	85036313	85124858	LRRIQ1|ENST00000525971.6	+	85036313,85038152,85040489,85044717,85046019,85047246,85052176,85055546,85065261,85066747,85072906,85098354,85098866,85104003,85106521,85121696,85124069	85036407,85038308,85040601,85044809,85046137,85047470,85052251,85057184,85065414,85066898,85073098,85098548,85098994,85104077,85106615,85121876,85124858	0.560000
testis_male_adult_54_years	chr3	8675684	8675685	8675684	-	RAMPAGE_only	6	6	6	0.222792	2.584963	chr3	8673355	8676083	LTR|ERV1|HERVE-int	+	chr3	8619582	8677408	SSUH2|ENST00000455157.6	-	8619582,8623548,8625541,8626228,8626913,8629663,8630804,8632048,8633665,8635299,8635758,8639947,8658924,8659489,8663743,8670997,8677205	8620014,8623656,8625647,8626321,8627783,8629726,8630929,8632109,8633795,8635381,8635857,8640069,8659013,8659801,8663911,8671153,8677408	0.500000
testis_male_adult_54_years	chr4	72766637	72766638	72766637	+	High_confidence	124	125	134	4.975689	5.087273	chr4	72765716	72767051	LTR|ERV1|LTR12C	+	chr4	72766580	72767180	STRG.96101.1	+	72766580	72767180	0.947761
testis_male_adult_54_years	chr19	49817598	49817625	49817598	+	High_confidence	4	4	11	0.408452	3.459432	chr19	49817641	49817951	SINE|Alu|AluSx1	+	chr19	49818278	49836980	MED25|ENST00000620467.4	+	49818278,49818570,49819171,49828448,49828969,49829785,49830087,49830510,49830693,49836282,49836846	49818475,49818616,49819296,49828547,49829090,49829948,49830218,49830598,49830758,49836406,49836980	0.636364
testis_male_adult_54_years	chr4	130013934	130013935	130013934	+	High_confidence	22	22	23	0.854036	3.845351	chr4	130012604	130014348	LTR|ERV1|LTR12C	+	chr4	130013955	130014334	STRG.102852.1	+	130013955	130014334	0.826087
testis_male_adult_54_years	chr5	173579607	173579648	173579627	+	High_confidence	25	26	76	2.822033	5.159799	chr5	173579189	173579729	LTR|ERVL-MaLR|MLT1F	-	chr5	173579633	173581612	LOC285593|NR_027109.2	+	173579633,173580228	173579682,173581612	0.907895
testis_male_adult_54_years	chr4	86453161	86453203	86453190	-	High_confidence	29	38	388	14.407220	5.703778	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453192	MAPK10|ENST00000361569.8	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86453029	86017375,86029287,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453192	0.860825
testis_male_adult_54_years	chr6	125046442	125046455	125046442	+	High_confidence	3	3	8	0.297056	2.807355	chr6	125046404	125046490	DNA|hAT-Charlie|MER5B	+	chr6	125046599	125082954	RNF217|ENST00000368415.2	+	125046599,125057941,125076656,125081435,125082863	125046661,125058106,125076858,125081507,125082954	0.750000
testis_male_adult_54_years	chr21	25934080	25934089	25934088	+	High_confidence	9	14	23	0.854036	4.106603	chr21	25933925	25934358	LTR|ERVL-MaLR|MLT1C	+	chr21	25934086	25941641	AP001442.1|ENST00000596385.5	+	25934086,25934909,25937789,25941307	25934366,25935048,25937912,25941641	0.608696
testis_male_adult_54_years	chr8	107336516	107336581	107336516	-	High_confidence	16	16	100	3.713201	5.165331	chr8	107336384	107336688	SINE|Alu|AluY	+	chr8	107249481	107336515	ANGPT1|NM_001314051.1	-	107249481,107264220,107284681,107293935,107303239,107321895,107336149,107336383	107252015,107264351,107284848,107294037,107303367,107322128,107336271,107336515	0.930000
testis_male_adult_54_years	chr13	43055406	43055412	43055406	+	High_confidence	60	63	88	3.267617	5.987730	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43055086	43114080	STRG.267280.2	+	43055086,43065685,43068929,43078611,43085767,43107177	43062295,43065737,43069003,43078688,43085838,43114080	1.000000
testis_male_adult_54_years	chr12	102063213	102063224	102063213	-	RAMPAGE_only	2	2	6	0.222792	2.584963	chr12	102062989	102063561	LTR|ERV1|MER51A	-	chr12	102019276	102062149	WASHC3|ENST00000539515.5	-	102019276,102025973,102039867,102044104,102046053,102050188,102061247,102062105	102019371,102026038,102039975,102044212,102046119,102050291,102061346,102062149	0.500000
testis_male_adult_54_years	chr2	19711671	19711720	19711714	+	High_confidence	27	28	196	7.277874	6.205047	chr2	19711592	19711745	DNA|DNA|UCON78	+	chr2	19711714	19717576	AC019055.1|ENST00000432822.1	+	19711714,19717261	19711842,19717576	0.724490
testis_male_adult_54_years	chr8	56488963	56488977	56488963	-	RAMPAGE_only	16	19	28	1.039696	4.430632	chr8	56488917	56489306	LTR|ERVL-MaLR|MSTB	+	chr8	56476825	56477987	SEPT10P1|ENST00000517342.1	-	56476825	56477987	0.678571
testis_male_adult_54_years	chr12	110688629	110688658	110688629	-	High_confidence	12	12	31	1.151092	4.173557	chr12	110688571	110688794	SINE|MIR|MIRc	+	chr12	110648796	110688709	HVCN1|ENST00000356742.9	-	110648796,110650167,110651216,110655233,110661163,110683224,110687974	110649475,110650280,110651448,110655338,110661448,110683264,110688709	0.967742
testis_male_adult_54_years	chr1	217737843	217737844	217737843	+	High_confidence	19	20	26	0.965432	4.334963	chr1	217737827	217738125	SINE|Alu|AluSx	-	chr1	217737843	217801768	SPATA17|ENST00000492747.2	+	217737843,217739472,217741974,217774333,217782173,217801717	217737967,217739589,217742098,217774537,217782322,217801768	0.884615
testis_male_adult_54_years	chr15	58865715	58865749	58865738	-	High_confidence	32	46	107	3.973125	5.890452	chr15	58865655	58865936	LTR|ERVL|MER77	-	chr15	58861955	58865773	STRG.295323.3	-	58861955	58865773	0.990654
testis_male_adult_54_years	chr14	47119126	47119142	47119126	-	RAMPAGE_only	4	4	14	0.519848	3.180833	chr14	47119047	47119364	SINE|Alu|AluY	-	chr14	47035188	47131838	MDGA2|ENST00000554762.5	-	47035188,47061248,47096853,47131713	47035304,47061578,47097039,47131838	0.571429
testis_male_adult_54_years	chr11	74129499	74129509	74129499	-	RAMPAGE_only	2	2	7	0.259924	2.584963	chr11	74128567	74130129	Retroposon|SVA|SVA_D	-	chr11	74129173	74133630	C2CD3|ENST00000436679.2	-	74129173,74132843,74133424	74129972,74132972,74133630	0.714286
testis_male_adult_54_years	chr19	10207154	10207174	10207167	-	RAMPAGE_only	12	12	26	0.965432	4.483856	chr19	10207087	10207548	LTR|ERVL-MaLR|MLT1F	+	chr19	10180354	10201197	DNMT1|ENST00000586800.5	-	10180354,10180777,10182040,10200873,10201118	10180569,10180885,10182077,10201017,10201197	0.500000
testis_male_adult_54_years	chr6	147660702	147660705	147660704	+	High_confidence	23	34	39	1.448148	5.112200	chr6	147660510	147660901	LTR|ERVL-MaLR|MSTA	+	chr6	147660736	147737556	AL033504.1|ENST00000432506.5	+	147660736,147733728,147737316	147660819,147733811,147737556	0.589744
testis_male_adult_54_years	chr20	42968736	42968760	42968757	+	High_confidence	6	7	22	0.816904	4.459432	chr20	42968642	42968808	SINE|MIR|MIRb	-	chr20	42968742	42971492	AL031676.1|ENST00000412519.1	+	42968742,42970825	42969661,42971492	0.863636
testis_male_adult_54_years	chr1	52914041	52914057	52914056	-	RAMPAGE_only	9	9	19	0.705508	4.169925	chr1	52913984	52914299	LINE|L2|L2b	-	chr1	52913719	52921721	ECHDC2|ENST00000474789.1	-	52913719,52921552	52914095,52921721	0.578947
testis_male_adult_54_years	chr1	180509371	180509411	180509410	+	High_confidence	36	60	88	3.267617	5.028597	chr1	180508432	180509814	LTR|ERV1|LTR12C	+	chr1	180509375	180510457	STRG.20573.1	+	180509375	180510457	0.988636
testis_male_adult_54_years	chr20	25296857	25296874	25296873	+	RAMPAGE_only	13	13	20	0.742640	3.471354	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	0.950000
testis_male_adult_54_years	chr5	173463483	173463522	173463521	+	High_confidence	16	16	80	2.970561	5.143420	chr5	173463359	173463824	LTR|ERVL-MaLR|MLT1L	+	chr5	173463499	173469873	STRG.133166.2	+	173463499,173469468	173467348,173469873	0.962500
testis_male_adult_54_years	chr2	229939966	229939974	229939970	-	RAMPAGE_only	3	3	8	0.297056	2.807355	chr2	229939800	229940101	SINE|Alu|AluJb	+	chr2	229859210	229923239	TRIP12|ENST00000435716.5	-	229859210,229879981,229923147	229859574,229880128,229923239	0.500000
testis_male_adult_54_years	chr15	51303146	51303181	51303179	+	High_confidence	17	22	60	2.227921	5.444188	chr15	51303071	51303342	DNA|hAT-Tip100|MamTip2	-	chr15	51302270	51303792	STRG.294594.1	+	51302270	51303792	0.600000
testis_male_adult_54_years	chr6	143037539	143037571	143037570	-	High_confidence	8	8	28	1.039696	3.840266	chr6	143037276	143038070	LINE|L1|L1MEg	-	chr6	142966420	143037582	LINC01277|NR_038987.1	-	142966420,143021665,143036988	142967441,143021953,143037582	0.821429
testis_male_adult_54_years	chr4	28114149	28114181	28114159	-	RAMPAGE_only	5	5	13	0.482716	3.584963	chr4	28114035	28114374	LINE|L1|L1MB3	+	chr4	28031452	28116766	STRG.92033.1	-	28031452,28114050,28116447	28032460,28114185,28116766	0.769231
testis_male_adult_54_years	chr11	117110032	117110035	117110034	-	High_confidence	3	5	8	0.297056	2.750000	chr11	117109618	117111006	LTR|ERV1|LTR12C	-	chr11	117109637	117109970	STRG.243241.1	-	117109637	117109970	0.500000
testis_male_adult_54_years	chr8	57210165	57210366	57210165	+	RAMPAGE_only	21	21	227	8.428967	4.500376	chr8	57210108	57210427	LTR|ERV1|MER50	-	chr8	57193619	57220236	STRG.184749.4	+	57193619,57193884,57210733,57212877,57215108,57218269,57220110	57193689,57206354,57212583,57214932,57217976,57219623,57220236	0.537445
testis_male_adult_54_years	chr5	118282562	118282587	118282586	+	High_confidence	16	17	87	3.230485	5.617950	chr5	118281980	118283545	Retroposon|SVA|SVA_C	+	chr5	118282574	118284782	LINC02148|ENST00000503877.1	+	118282574,118283712	118282727,118284782	0.965517
testis_male_adult_54_years	chr15	42675603	42675613	42675603	+	High_confidence	4	4	8	0.297056	2.750000	chr15	42675586	42675640	LINE|L2|L2a	+	chr15	42675495	42682213	STARD9|ENST00000562139.1	+	42675495,42675871,42681421,42682103	42675746,42675975,42681612,42682213	0.875000
testis_male_adult_54_years	chr2	231258854	231258866	231258865	-	High_confidence	16	16	33	1.225356	4.760648	chr2	231258717	231258852	DNA|hAT-Charlie|Charlie15a	-	chr2	231258026	231258882	STRG.59317.1	-	231258026	231258882	0.878788
testis_male_adult_54_years	chrX	135893595	135893596	135893595	-	High_confidence	5	7	7	0.259924	2.584963	chrX	135893277	135893550	LTR|ERVL|LTR41	-	chrX	135880751	135893428	CT45A10|NM_001291529.1	-	135880751,135882535,135883007,135885175,135893344	135881315,135882629,135883256,135885350,135893428	0.714286
testis_male_adult_54_years	chr12	29519435	29519449	29519445	-	High_confidence	4	4	11	0.408452	3.321928	chr12	29519325	29519435	SINE|MIR|MIRc	-	chr12	29505976	29519454	TMTC1|ENST00000552925.5	-	29505976,29512042,29514481,29516348,29517426,29518480,29519217	29506986,29512120,29514604,29516486,29517571,29518607,29519454	0.818182
testis_male_adult_54_years	chr5	26485354	26485375	26485374	+	High_confidence	8	8	16	0.594112	3.773557	chr5	26484296	26485843	LTR|ERV1|LTR12C	-	chr5	26485562	26499176	STRG.115050.1	+	26485562,26499131	26485905,26499176	0.687500
testis_male_adult_54_years	chr1	40456952	40456953	40456952	+	RAMPAGE_only	7	7	8	0.297056	2.807355	chr1	40456917	40457007	DNA|TcMar-Tigger|Tigger19b	-	chr1	40450664	40463718	ZFP69B|NM_023070.2	+	40450664,40454202,40456944,40457343,40462420	40451088,40454288,40457071,40457439,40463718	0.875000
testis_male_adult_54_years	chr17	67352804	67352840	67352830	-	RAMPAGE_only	53	58	227	8.428967	5.879506	chr17	67352766	67352999	DNA|TcMar-Tigger|Tigger7	+	chr17	67337919	67353965	STRG.320377.2	-	67337919,67342185,67344605,67345744,67347115,67347335,67348549,67350228,67352624	67341052,67342263,67344780,67345857,67347250,67347485,67348654,67350336,67353965	0.969163
testis_male_adult_54_years	chr22	29552545	29552547	29552545	-	RAMPAGE_only	3	5	7	0.259924	2.521641	chr22	29551785	29553257	Retroposon|SVA|SVA_C	+	chr22	29508166	29553655	THOC5|NM_001002878.1	-	29508166,29511105,29512020,29517028,29517262,29519005,29520007,29520997,29525837,29528077,29528425,29529161,29531830,29536623,29539329,29542858,29543428,29544459,29549051,29550727,29553447	29508520,29511296,29512136,29517116,29517366,29519120,29520104,29521099,29525946,29528177,29528466,29529239,29531963,29536738,29539476,29542956,29543542,29544603,29549158,29550843,29553655	1.000000
testis_male_adult_54_years	chr3	52412606	52412626	52412606	-	High_confidence	13	15	37	1.373884	4.593400	chr3	52412490	52412698	SINE|MIR|MIR	+	chr3	52410925	52411785	STRG.67979.11	-	52410925	52411785	0.918919
testis_male_adult_54_years	chr19	52368896	52368901	52368900	+	RAMPAGE_only	11	11	24	0.891168	4.277613	chr19	52368836	52369000	SINE|Alu|AluJb	+	chr19	52369916	52383969	ZNF880|ENST00000424032.6	+	52369916,52373110,52374298,52379420,52383848	52369977,52373237,52374427,52379540,52383969	0.708333
testis_male_adult_54_years	chr2	241695222	241695237	241695236	+	RAMPAGE_only	4	4	12	0.445584	3.251629	chr2	241695048	241695410	LTR|ERVL-MaLR|MLT1H1	+	chr2	241702034	241712380	ING5|ENST00000492488.5	+	241702034,241704652,241709215,241711376,241711977	241702102,241704724,241709382,241711488,241712380	0.833333
testis_male_adult_54_years	chr6	73990578	73990585	73990584	+	High_confidence	12	12	22	0.816904	4.121928	chr6	73989808	73991194	LTR|ERV1|LTR12C	-	chr6	73990555	73991180	STRG.144059.1	+	73990555	73991180	0.500000
testis_male_adult_54_years	chr14	44912149	44912192	44912191	-	High_confidence	24	24	91	3.379013	5.068587	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44912213	STRG.281295.3	-	44898907,44899229,44911756,44911977	44899076,44899313,44911860,44912213	0.956044
testis_male_adult_54_years	chr12	132761168	132761218	132761210	-	High_confidence	17	17	101	3.750333	5.982467	chr12	132761047	132761359	LINE|L2|L2	+	chr12	132725667	132761813	ANKLE2|ENST00000539605.5	-	132725667,132728031,132729678,132734384,132735405,132736892,132741418,132743153,132747831,132748137,132750642,132754674	132727443,132728163,132730270,132734575,132735512,132737065,132741485,132743276,132748020,132748331,132750849,132761813	0.980198
testis_male_adult_54_years	chr19	31588240	31588269	31588240	+	High_confidence	2	3	11	0.408452	3.459432	chr19	31588069	31588503	LTR|ERV1|MER50	-	chr19	31588254	31593781	AC011525.2|ENST00000590611.2	+	31588254,31588817,31591219,31592408	31588316,31588948,31591310,31593781	0.909091
testis_male_adult_54_years	chr18	27342773	27342804	27342773	+	High_confidence	4	4	17	0.631244	3.852169	chr18	27342733	27343200	LTR|ERVL-MaLR|MLT1D	-	chr18	27342779	27346083	STRG.325328.1	+	27342779,27343146,27344220,27345370	27342883,27343311,27344342,27346083	0.647059
testis_male_adult_54_years	chr5	129500304	129500319	129500318	+	RAMPAGE_only	3	3	9	0.334188	2.725481	chr5	129500278	129500572	LTR|ERV1|LTR78	-	chr5	129461675	129528543	ADAMTS19|ENST00000502709.1	+	129461675,129509076,129526283,129527747,129528519	129461757,129509242,129526515,129527831,129528543	0.777778
testis_male_adult_54_years	chr13	77475823	77475884	77475823	+	RAMPAGE_only	77	77	216	8.020514	6.301077	chr13	77474476	77476020	LTR|ERV1|LTR12C	-	chr13	77535673	77645263	SCEL|NM_144777.2	+	77535673,77555856,77556595,77559803,77563830,77567679,77568294,77569370,77572123,77589143,77591394,77593513,77597544,77599328,77599688,77602064,77602653,77603075,77604355,77608055,77609057,77610046,77612890,77613892,77617598,77617802,77618003,77627946,77634378,77637119,77640675,77642705,77644257	77535824,77555918,77556713,77559863,77563899,77567748,77568333,77569451,77572189,77589224,77591460,77593573,77597589,77599388,77599748,77602124,77602713,77603135,77604415,77608115,77609117,77610106,77612941,77613955,77617658,77617862,77618060,77628009,77634450,77637194,77640784,77642808,77645263	0.847222
testis_male_adult_54_years	chrX	134839154	134839157	134839154	+	RAMPAGE_only	3	3	8	0.297056	2.521641	chrX	134838660	134840373	Retroposon|SVA|SVA_D	+	chrX	134835094	134854562	FAM122C|ENST00000645256.1	+	134835094,134838726,134845204,134845346,134847382,134852799,134854090	134835796,134839603,134845248,134845401,134847475,134852896,134854562	0.875000
testis_male_adult_54_years	chr11	68546735	68546746	68546735	+	RAMPAGE_only	27	27	53	1.967997	5.203856	chr11	68546622	68546786	LTR|ERVL-MaLR|MLT1L	-	chr11	68537815	68613117	STRG.236710.5	+	68537815,68544837,68548066,68551120,68554144,68558565,68564302,68567013,68569747,68571039,68574108,68575957,68583042,68587926,68590659,68591575,68596096,68600340,68601862,68603341,68609903,68613065	68537891,68545024,68548204,68551186,68554257,68558679,68564432,68567166,68569897,68571104,68574224,68576043,68583129,68588024,68590714,68591706,68596218,68600494,68601969,68603492,68610023,68613117	0.773585
testis_male_adult_54_years	chrX	65532875	65532909	65532875	-	RAMPAGE_only	2	2	8	0.297056	2.807355	chrX	65532780	65532966	LINE|L2|L2c	-	chrX	65512582	65534754	STRG.363694.2	-	65512582,65514822,65517986,65520701,65523559,65524055,65524563,65524964,65528259,65529593,65531356,65532560,65533609,65534479	65512901,65514973,65518465,65522493,65523707,65524262,65524614,65525050,65529258,65529878,65531438,65532630,65533735,65534754	0.875000
testis_male_adult_54_years	chr7	133370495	133370500	133370495	+	RAMPAGE_only	4	4	8	0.297056	2.500000	chr7	133370157	133370732	LTR|ERV1|MER4A1_	-	chr7	133396138	133630138	EXOC4|ENST00000486409.6	+	133396138,133475327,133480049,133630044	133396414,133475473,133480138,133630138	0.500000
testis_male_adult_54_years	chr6	158152834	158152865	158152834	-	RAMPAGE_only	7	7	29	1.076828	4.423252	chr6	158152532	158152945	DNA|TcMar-Tigger|Tigger3c	+	chr6	158145919	158159298	SERAC1|ENST00000607000.1	-	158145919,158148864,158150452,158155314,158158272	158146913,158148954,158150589,158155351,158159298	0.931034
testis_male_adult_54_years	chr16	14322470	14322476	14322470	+	High_confidence	83	83	149	5.532670	5.140161	chr16	14322345	14322545	LINE|L2|L2c	+	chr16	14322470	14326512	MIR193BHG|ENST00000641033.1	+	14322470,14323296,14326012	14322543,14323383,14326512	0.946309
testis_male_adult_54_years	chr4	87395495	87395496	87395495	-	High_confidence	480	481	522	19.382910	5.498810	chr4	87395109	87396510	LTR|ERV1|LTR12C	-	chr4	87337048	87395504	STRG.97797.2	-	87337048,87340489,87357278,87372708,87374698,87382254,87394948	87337366,87340606,87357416,87372815,87374830,87382362,87395504	0.980843
testis_male_adult_54_years	chr15	99250958	99251002	99250958	-	High_confidence	3	3	13	0.482716	3.188722	chr15	99250857	99251018	SINE|MIR|MIR	+	chr15	99155363	99251217	TTC23|ENST00000394129.6	-	99155363,99161739,99175049,99199918,99218587,99218897,99221740,99228532,99241364,99245388,99249621,99251154	99156297,99161867,99175155,99200096,99218713,99219048,99221864,99228732,99241559,99245510,99249799,99251217	0.615385
testis_male_adult_54_years	chr1	62207399	62207429	62207428	+	RAMPAGE_only	2	2	8	0.297056	3.000000	chr1	62207099	62207716	LINE|L1|L1MEd	+	chr1	62194830	62212328	L1TD1|ENST00000498273.1	+	62194830,62196434,62206518,62209782	62194921,62196528,62207636,62212328	1.000000
testis_male_adult_54_years	chrX	111665791	111665811	111665810	+	High_confidence	3	4	6	0.222792	2.584963	chrX	111665612	111666014	LTR|ERVL|MLT2A1	+	chrX	111665810	111713297	ALG13|ENST00000487141.5	+	111665810,111682131,111684964,111689086,111711674,111712483,111713224	111665971,111682294,111685103,111689197,111711725,111712530,111713297	0.500000
testis_male_adult_54_years	chr2	86482577	86482687	86482577	+	RAMPAGE_only	121	122	203	7.537798	6.075965	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.650246
testis_male_adult_54_years	chr21	16630908	16630909	16630908	+	High_confidence	4	4	7	0.259924	2.807355	chr21	16630604	16631044	LTR|ERVL?|LTR89	-	chr21	16630826	16640633	MIR99AHG|ENST00000413645.1	+	16630826,16640229	16630972,16640633	0.714286
testis_male_adult_54_years	chr6	130138469	130138489	130138474	-	High_confidence	4	4	16	0.594112	3.906891	chr6	130138220	130138674	LTR|ERVL-MaLR|MLT1C	-	chr6	130133516	130138466	AL355581.1|ENST00000617353.1	-	130133516,130137944	130133719,130138466	0.875000
testis_male_adult_54_years	chr16	20674647	20674766	20674647	+	High_confidence	30	30	167	6.201046	6.432098	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.580838
testis_male_adult_54_years	chr18	51218313	51218334	51218313	-	High_confidence	119	122	655	24.321467	6.228386	chr18	51218274	51218543	DNA|TcMar-Tigger|Tigger16b	+	chr18	51176820	51218304	MEX3C|ENST00000591040.1	-	51176820,51218261	51177576,51218304	0.955725
testis_male_adult_54_years	chr3	156673588	156673594	156673593	-	High_confidence	38	38	68	2.524977	5.331977	chr3	156673372	156673596	LTR|ERVL-MaLR|MLT1J-int	-	chr3	156671863	156673933	TIPARP-AS1|ENST00000478005.1	-	156671863,156673646	156672130,156673933	0.544118
testis_male_adult_54_years	chr6	96991858	96991871	96991870	+	RAMPAGE_only	3	3	8	0.297056	2.750000	chr6	96989110	96992512	LINE|L1|L1PA15	-	chr6	96990204	96994060	STRG.147196.1	+	96990204	96994060	0.500000
testis_male_adult_54_years	chr3	14418825	14418889	14418862	+	High_confidence	9	9	41	1.522412	4.080368	chr3	14418696	14418896	SINE|MIR|MIR	-	chr3	14418625	14419960	STRG.63361.9	+	14418625,14419555,14419787	14419022,14419606,14419960	0.658537
testis_male_adult_54_years	chr9	131167433	131167467	131167466	-	High_confidence	23	30	144	5.347010	5.252612	chr9	131167152	131167669	LINE|L1|L1ME3B	-	chr9	131159377	131167465	AL157938.2|ENST00000417798.2	-	131159377,131163282,131167077	131159463,131163333,131167465	0.881944
testis_male_adult_54_years	chr3	182536758	182536779	182536758	-	RAMPAGE_only	8	9	16	0.594112	3.906891	chr3	182536738	182536991	SINE|tRNA|LFSINE_Vert	-	chr3	182498263	182507124	LINC01995|ENST00000489016.1	-	182498263,182504078,182504671,182507082	182498423,182504454,182504714,182507124	0.750000
testis_male_adult_54_years	chr6	35340313	35340327	35340313	+	RAMPAGE_only	3	3	10	0.371320	3.169925	chr6	35339725	35340993	Retroposon|SVA|SVA_C	+	chr6	35342557	35425133	STRG.140583.2	+	35342557,35347066,35348362,35410986,35420126,35421819,35423945,35424328	35342681,35347150,35349003,35411217,35420281,35421958,35424148,35425133	0.500000
testis_male_adult_54_years	chr8	121667539	121667576	121667562	+	High_confidence	9	9	51	1.893733	4.828905	chr8	121666488	121667976	LTR|ERV1|LTR12C	-	chr8	121667552	121668089	STRG.193511.1	+	121667552	121668089	0.529412
testis_male_adult_54_years	chr12	64130654	64130677	64130657	+	RAMPAGE_only	8	10	38	1.411016	4.649115	chr12	64130008	64131894	LTR|ERVL|HERVL-int	-	chr12	64127636	64142566	SRGAP1|ENST00000542841.1	+	64127636,64142294	64128200,64142566	0.500000
testis_male_adult_54_years	chr13	109269011	109269059	109269011	-	High_confidence	33	33	77	2.859165	5.201536	chr13	109265521	109269052	LTR|ERV1|HERVH-int	+	chr13	109267721	109268997	STRG.275967.1	-	109267721,109268785	109267840,109268997	0.558442
testis_male_adult_54_years	chr2	135564066	135564118	135564117	+	RAMPAGE_only	7	7	23	0.854036	4.201841	chr2	135563768	135564177	LTR|ERVL-MaLR|MSTB	-	chr2	135531516	135604820	R3HDM1|ENST00000438014.5	+	135531516,135565736,135568757,135602499,135604805	135531633,135565925,135568809,135602708,135604820	0.608696
testis_male_adult_54_years	chr14	94581668	94581676	94581668	+	High_confidence	8	8	17	0.631244	3.852169	chr14	94581654	94581760	SINE|MIR|MIRb	+	chr14	94581614	94593115	SERPINA5|ENST00000554276.1	+	94581614,94587345,94590040,94590748,94592056	94581710,94587981,94590311,94590896,94593115	1.000000
testis_male_adult_54_years	chr7	117287076	117287099	117287098	+	High_confidence	26	28	86	3.193353	5.354207	chr7	117287066	117287364	SINE|Alu|AluSc	+	chr7	117287085	117322228	STRG.172137.2	+	117287085,117300861,117322057	117287165,117301030,117322228	0.837209
testis_male_adult_54_years	chr15	32910480	32910492	32910480	-	RAMPAGE_only	3	3	6	0.222792	2.584963	chr15	32910419	32910514	LINE|CR1|L3	-	chr15	32765545	33067884	FMN1|ENST00000334528.13	-	32765545,32776834,32798803,32804280,32857014,32888171,32898833,32899978,32901910,32908489,32910473,32926173,32964106,32968713,33008013,33064956,33066510	32774354,32776919,32798953,32804332,32857107,32888292,32898893,32900125,32902040,32908578,32910535,32926261,32964257,32969477,33008075,33065074,33067884	0.833333
testis_male_adult_54_years	chr5	27436406	27436421	27436420	-	High_confidence	7	8	15	0.556980	3.807355	chr5	27436276	27436612	LTR|ERV1|LTR31	-	chr5	27412612	27436411	AC113355.1|ENST00000510512.1	-	27412612,27423500,27428159,27436152	27412689,27423601,27428213,27436411	0.733333
testis_male_adult_54_years	chr11	77571178	77571212	77571178	+	High_confidence	3	3	14	0.519848	3.521641	chr11	77570921	77571455	LTR|ERV1|LTR61	+	chr11	77571088	77575662	LOC646029|NR_130930.1	+	77571088,77571514,77574210	77571310,77571685,77575662	0.928571
testis_male_adult_54_years	chr18	50876573	50876574	50876573	+	RAMPAGE_only	6	6	7	0.259924	2.584963	chr18	50876031	50876809	LTR|ERVL|MER21C	+	chr18	50878733	50954257	ME2|ENST00000321341.10	+	50878733,50895808,50908062,50912800,50916167,50917346,50918109,50920455,50920660,50921073,50924097,50925755,50932257,50939569,50940287,50947016	50879308,50895928,50908196,50912950,50916243,50917508,50918213,50920565,50920758,50921187,50924212,50925898,50932360,50939640,50940386,50954257	0.857143
testis_male_adult_54_years	chr6	31893404	31893406	31893404	-	RAMPAGE_only	3	5	8	0.297056	2.807355	chr6	31893329	31893615	SINE|Alu|AluJr	-	chr6	31879758	31896504	EHMT2|ENST00000480912.5	-	31879758,31880672,31881013,31882698,31882893,31883361,31883805,31884391,31884644,31884890,31886580,31886774,31886994,31887576,31887778,31888040,31888362,31888598,31888968,31889227,31889467,31892406,31892693,31892825,31893361,31896262	31880264,31880848,31881092,31882785,31883009,31883439,31883950,31884559,31884799,31885016,31886682,31886897,31887101,31887659,31887961,31888276,31888506,31888747,31889070,31889342,31889602,31892562,31892734,31892910,31893662,31896504	0.875000
testis_male_adult_54_years	chr7	31421273	31421280	31421273	-	High_confidence	8	8	16	0.594112	3.875000	chr7	31421105	31421326	SINE|MIR|MIR	-	chr7	31414644	31421286	AC005090.1|ENST00000433356.1	-	31414644,31415370,31416810,31421248	31414882,31415575,31416904,31421286	0.687500
testis_male_adult_54_years	chr8	3183046	3183085	3183046	-	High_confidence	56	56	285	10.582623	5.773900	chr8	3182937	3183057	SINE|Alu|AluY	-	chr8	2934817	3183134	STRG.179102.2	-	2934817,2942471,2949298,2950230,2951113,2954223,2955588,2957695,2961140,2962465,2963221,2965774,2966569,2973116,2974450,2978611,2998010,2999957,3018476,3029318,3052461,3087096,3091515,3096848,3106527,3107717,3108602,3110157,3118398,3142464,3151396,3157896,3162158,3181109,3182990	2938744,2942604,2949386,2950343,2951275,2954268,2955768,2957807,2961214,2962639,2963395,2965954,2966746,2973299,2974624,2978800,2998184,3000131,3018650,3029513,3052647,3087285,3091662,3097037,3106641,3107798,3108748,3110335,3118587,3142674,3151513,3157966,3162277,3181214,3183134	0.919298
testis_male_adult_54_years	chr5	89456064	89456077	89456076	+	RAMPAGE_only	5	7	12	0.445584	3.084963	chr5	89455901	89456270	LTR|ERVL-MaLR|MLT1A	+	chr5	89418806	89466398	MEF2C-AS1|ENST00000508742.1	+	89418806,89465665,89465915	89418892,89465775,89466398	0.583333
testis_male_adult_54_years	chr4	172686998	172687028	172687018	+	RAMPAGE_only	11	11	38	1.411016	4.912273	chr4	172686928	172687106	SINE|MIR|MIRc	-	chr4	172697362	172697766	STRG.108480.1	+	172697362	172697766	0.578947
testis_male_adult_54_years	chr15	32910511	32910524	32910523	-	RAMPAGE_only	3	3	8	0.297056	2.521641	chr15	32910419	32910514	LINE|CR1|L3	-	chr15	32765545	33067884	FMN1|ENST00000334528.13	-	32765545,32776834,32798803,32804280,32857014,32888171,32898833,32899978,32901910,32908489,32910473,32926173,32964106,32968713,33008013,33064956,33066510	32774354,32776919,32798953,32804332,32857107,32888292,32898893,32900125,32902040,32908578,32910535,32926261,32964257,32969477,33008075,33065074,33067884	0.625000
testis_male_adult_54_years	chr22	31567424	31567425	31567424	+	RAMPAGE_only	7	7	9	0.334188	3.169925	chr22	31567316	31567500	LINE|L2|L2	-	chr22	31572762	31583934	SFI1|ENST00000476010.5	+	31572762,31575230,31578381,31583874	31573214,31575392,31578452,31583934	0.555556
testis_male_adult_54_years	chr13	63843409	63843446	63843409	-	High_confidence	8	8	26	0.965432	4.546594	chr13	63843244	63843845	LTR|ERV1|HERVE-int	+	chr13	63828846	63843441	OR7E104P|ENST00000607822.5	-	63828846,63831453,63839069,63839748,63843313	63829152,63831527,63839225,63841623,63843441	0.653846
testis_male_adult_54_years	chr2	156229885	156229893	156229885	-	High_confidence	13	13	21	0.779772	2.920597	chr2	156229122	156235858	LINE|L1|L1PB1	+	chr2	156229301	156230097	STRG.49217.1	-	156229301	156230097	0.857143
testis_male_adult_54_years	chr5	129003505	129003524	129003523	+	RAMPAGE_only	9	9	16	0.594112	3.456565	chr5	129003555	129003689	SINE|Alu|AluJo	+	chr5	128965527	129033282	SLC27A6|ENST00000506176.1	+	128965527,128965873,128985132,128988599,128990339,129015884,129023619,129027132,129028344,129029576,129033105	128965697,128966618,128985336,128988758,128990464,129016079,129023710,129027331,129028442,129029707,129033282	0.937500
testis_male_adult_54_years	chr3	180868750	180868772	180868771	+	High_confidence	32	32	94	3.490409	5.963673	chr3	180868652	180869201	LTR|ERV1|HUERS-P2-int	-	chr3	180868750	180870731	STRG.85141.22	+	180868750,180870067	180868836,180870731	0.574468
testis_male_adult_54_years	chr1	25246011	25246033	25246011	-	High_confidence	6	6	17	0.631244	3.969816	chr1	25245900	25246051	SINE|Alu|AluSz6	-	chr1	25242277	25246627	RSRP1|ENST00000570063.5	-	25242277,25243549,25244176,25246443	25242705,25243633,25245301,25246627	0.764706
testis_male_adult_54_years	chr14	59462847	59462848	59462847	-	RAMPAGE_only	6	7	9	0.334188	2.947703	chr14	59462639	59463019	DNA|TcMar-Mariner|MARNA	+	chr14	59429021	59465341	GPR135|ENST00000481661.1	-	59429021,59455683,59456437,59458856,59460971,59461265,59463502	59429087,59455760,59456545,59459004,59461173,59461365,59465341	0.777778
testis_male_adult_54_years	chr10	85577728	85577759	85577758	+	High_confidence	62	65	198	7.352138	6.586900	chr10	85576887	85578433	LINE|L2|L2a	-	chr10	85577752	85605804	GRID1-AS1|ENST00000628016.1	+	85577752,85605394	85577898,85605804	0.580808
testis_male_adult_54_years	chr2	202136642	202136727	202136642	+	High_confidence	4	4	34	1.262488	4.657882	chr2	202136035	202136887	LTR|ERV1|LTR12D	-	chr2	202135715	202197862	KIAA2012|ENST00000469462.1	+	202135715,202154672,202165283,202184752,202186932,202188151,202190173,202193300,202194189,202196799	202138508,202154810,202165356,202184843,202187098,202188266,202190493,202193503,202194362,202197862	0.941176
testis_male_adult_54_years	chr3	179681656	179681666	179681665	+	RAMPAGE_only	37	46	88	3.267617	5.443366	chr3	179681222	179681750	LTR|ERV1|LTR6A	-	chr3	179653692	179784406	USP13|ENST00000496897.5	+	179653692,179681877,179690240,179701007,179706933,179708772,179719939,179721401,179730188,179730615,179740246,179742196,179745042,179752284,179754731,179757051,179761111,179764001,179765694,179781738,179784047	179653750,179682003,179690301,179701129,179707076,179708957,179720034,179721589,179730260,179730709,179740372,179742350,179745217,179752373,179754854,179757078,179761255,179764168,179765848,179781823,179784406	0.920455
testis_male_adult_54_years	chr9	18803494	18803495	18803494	-	High_confidence	4	4	6	0.222792	2.584963	chr9	18803053	18803559	LTR|ERVL-MaLR|MLT1E3	-	chr9	18802622	18803491	STRG.198332.2	-	18802622	18803491	0.833333
testis_male_adult_54_years	chr8	124942003	124942044	124942043	+	High_confidence	8	8	34	1.262488	4.779094	chr8	124941950	124942076	LTR|ERVL-MaLR|MLT1I	+	chr8	124942054	124951097	LINC00964|ENST00000510897.6	+	124942054,124943269,124946054,124950815	124942724,124945746,124946159,124951097	0.911765
testis_male_adult_54_years	chr7	128622497	128622529	128622497	+	RAMPAGE_only	10	11	42	1.559544	4.958354	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.833333
testis_male_adult_54_years	chr13	84900998	84900999	84900998	-	RAMPAGE_only	24	25	32	1.188224	3.851410	chr13	84900835	84901196	LTR|ERVL-MaLR|THE1B	-	chr13	84881598	84894342	STRG.273022.1	-	84881598,84892193,84893952	84881631,84892328,84894342	0.500000
testis_male_adult_54_years	chr3	84881972	84881980	84881979	+	RAMPAGE_only	3	3	7	0.259924	2.807355	chr3	84881861	84882024	LINE|L1|L1MC5a	-	chr3	84884939	84911248	STRG.71875.1	+	84884939,84892931,84911107	84885045,84892965,84911248	0.714286
testis_male_adult_54_years	chr12	125083231	125083281	125083231	-	RAMPAGE_only	27	30	125	4.641501	6.067798	chr12	125082999	125083452	LTR|ERVL-MaLR|MLT1F	-	chr12	125076142	125076570	STRG.263440.1	-	125076142	125076570	0.512000
testis_male_adult_54_years	chr9	68742275	68742321	68742275	+	High_confidence	45	46	145	5.384142	6.456869	chr9	68742229	68742315	DNA|TcMar-Tigger|Tigger16a	+	chr9	68742254	69009176	PIP5K1B|ENST00000478500.3	+	68742254,68742500,68818460,68822614,68824095,68863836,68876676,68888980,68894338,68917547,68919478,68919680,68923301,68934889,68940645,68963182,68964027,68965588,68966506,68991139,69008446	68742354,68742657,68818545,68822683,68824215,68863967,68876794,68889133,68894638,68917759,68919562,68919729,68923386,68935045,68940790,68963321,68964127,68965648,68966730,68991257,69009176	0.855172
testis_male_adult_54_years	chr2	160439109	160439116	160439109	+	RAMPAGE_only	3	3	7	0.259924	2.584963	chr2	160438258	160440064	Retroposon|SVA|SVA_D	-	chr2	160440284	160440584	STRG.49753.1	+	160440284	160440584	0.857143
testis_male_adult_54_years	chr3	186440367	186440407	186440390	+	High_confidence	10	11	36	1.336752	4.850209	chr3	186440358	186440534	DNA|hAT-Charlie|MER3	+	chr3	186440379	186445242	LINC02020|ENST00000435548.1	+	186440379,186440981,186444905	186440448,186441179,186445242	0.527778
testis_male_adult_54_years	chr17	43389169	43389206	43389194	-	High_confidence	2	2	12	0.445584	3.027169	chr17	43388856	43389213	LINE|L2|L2c	+	chr17	43385862	43389199	LINC00910|ENST00000586231.1	-	43385862,43388504	43388057,43389199	0.833333
testis_male_adult_54_years	chr7	23598091	23598146	23598137	+	High_confidence	14	14	33	1.225356	4.756219	chr7	23598094	23598212	SINE|MIR|MIRb	+	chr7	23598160	23643237	CCDC126|ENST00000410069.1	+	23598160,23604141,23611170,23642930	23598222,23604279,23611553,23643237	0.969697
testis_male_adult_54_years	chr3	151440751	151440780	151440751	-	High_confidence	20	23	96	3.564673	5.883045	chr3	151440657	151440826	DNA|hAT-Charlie|MER5B	-	chr3	151436540	151440771	IGSF10|ENST00000495443.1	-	151436540,151440574	151438597,151440771	1.000000
testis_male_adult_54_years	chr3	80770347	80770433	80770412	-	High_confidence	165	183	878	32.601906	7.263682	chr3	80769735	80770387	LTR|ERV1|LTR1A1	-	chr3	80629318	80770811	STRG.71260.1	-	80629318,80633814,80761437,80769758	80631287,80633971,80761573,80770811	0.952164
testis_male_adult_54_years	chr6	145686917	145686926	145686925	-	High_confidence	4	4	13	0.482716	3.251629	chr6	145686778	145686917	SINE|MIR|MIRc	-	chr6	145633719	145686901	EPM2A|ENST00000639849.1	-	145633719,145635244,145671238,145686121,145686843	145633887,145635486,145671399,145686296,145686901	0.615385
testis_male_adult_54_years	chr5	162036506	162036507	162036506	+	High_confidence	4	5	6	0.222792	2.584963	chr5	162030925	162036952	LINE|L1|L1PA2	-	chr5	162036770	162097662	GABRG2|ENST00000640757.1	+	162036770,162093827,162095494,162097637	162036954,162093979,162095562,162097662	0.500000
testis_male_adult_54_years	chr7	118224402	118224439	118224402	+	High_confidence	2	2	13	0.482716	3.546594	chr7	118222174	118224425	LINE|L2|L2a	-	chr7	118224657	118242731	ANKRD7|NM_019644.3	+	118224657,118234430,118234700,118236040,118236789,118239908,118242348	118225009,118234545,118234874,118236147,118236926,118239998,118242731	0.923077
testis_male_adult_54_years	chr14	70223796	70223808	70223796	-	High_confidence	3	3	7	0.259924	2.521641	chr14	70223543	70223937	LTR|ERV1|MER61B	-	chr14	70208225	70223687	STRG.285151.1	-	70208225,70209965,70212557,70223259	70209042,70210393,70212649,70223687	0.857143
testis_male_adult_54_years	chr7	111413972	111414018	111413972	-	RAMPAGE_only	12	14	74	2.747769	5.495907	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	111411159	111451480	STRG.171087.6	-	111411159	111451480	0.743243
testis_male_adult_54_years	chr5	33522653	33522672	33522671	+	High_confidence	3	3	6	0.222792	2.584963	chr5	33522525	33522751	DNA|hAT-Charlie|MER20	-	chr5	33522663	33525176	STRG.115852.2	+	33522663,33524063	33522830,33525176	1.000000
testis_male_adult_54_years	chr16	53421497	53421526	53421505	+	RAMPAGE_only	2	2	13	0.482716	3.584963	chr16	53421317	53421603	LTR|ERV1|LTR12D	-	chr16	53433976	53453463	RBL2|ENST00000567964.6	+	53433976,53439015,53442657,53447041,53451702,53453451	53434276,53439146,53442858,53447106,53451831,53453463	0.615385
testis_male_adult_54_years	chr1	167937075	167937177	167937081	+	High_confidence	29	29	246	9.134475	5.325607	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167937152	167993330	DCAF6|ENST00000455334.5	+	167937152,167951799,167966628,167974829,167987494,167991203,167993225	167937252,167951861,167966721,167975015,167987608,167991339,167993330	0.930894
testis_male_adult_54_years	chr13	45123019	45123033	45123032	+	RAMPAGE_only	22	23	39	1.448148	4.067865	chr13	45123007	45123091	SINE|Alu|AluSz6	+	chr13	45120514	45284909	GTF2F2|ENST00000340473.7	+	45120514,45136732,45149769,45151686,45207423,45252870,45267232,45283441	45120721,45136806,45149788,45151831,45207505,45252970,45267376,45284909	0.974359
testis_male_adult_54_years	chr14	89888261	89888280	89888278	+	High_confidence	16	43	63	2.339317	5.274666	chr14	89888113	89888299	LTR|ERVL-MaLR|MLT1A0	+	chr14	89888244	89889254	STRG.287725.1	+	89888244	89889254	0.952381
testis_male_adult_54_years	chr3	80764867	80764908	80764897	+	High_confidence	3	3	13	0.482716	3.700440	chr3	80764756	80765011	LTR|ERV1|LTR27E	-	chr3	80764896	80789354	LINC02050|ENST00000473938.1	+	80764896,80780092,80784040,80788796,80789236	80765087,80780245,80784117,80788969,80789354	0.923077
testis_male_adult_54_years	chr20	53608798	53608805	53608798	-	High_confidence	3	3	9	0.334188	2.947703	chr20	53608733	53608922	SINE|MIR|MIR	+	chr20	53582541	53608892	ZNF217|ENST00000431687.5	-	53582541,53608353,53608831	53583168,53608444,53608892	0.888889
testis_male_adult_54_years	chr4	90649459	90649508	90649507	+	High_confidence	172	173	441	16.375217	7.639466	chr4	90649330	90649700	LTR|ERVL-MaLR|MLT1A	+	chr4	90649507	90780771	CCSER1|ENST00000504150.1	+	90649507,90723913,90727203,90780441	90649624,90723991,90727297,90780771	0.519274
testis_male_adult_54_years	chr10	73359696	73359720	73359706	-	High_confidence	32	33	141	5.235614	5.984994	chr10	73359454	73360513	LINE|L1|L1MC4	+	chr10	73253757	73358859	CFAP70|NM_145170.3	-	73253757,73256368,73269613,73272927,73274432,73275445,73277239,73278178,73291225,73291639,73291880,73293262,73297041,73298906,73299600,73310157,73311833,73312472,73322962,73331176,73335429,73341398,73345064,73348155,73348422,73353555,73354733,73358777	73254055,73256416,73269715,73273017,73274594,73275598,73277361,73278337,73291444,73291755,73292014,73293388,73297173,73299097,73299665,73310249,73311914,73312643,73323097,73331276,73335524,73341581,73345244,73348235,73348521,73353742,73354835,73358859	0.893617
testis_male_adult_54_years	chr10	47490459	47490460	47490459	-	High_confidence	39	39	40	1.485280	4.438747	chr10	47490325	47490660	LTR|ERVK|LTR14A	-	chr10	47487218	47490407	FAM25G|ENST00000481177.1	-	47487218,47489585,47490286	47487408,47489648,47490407	0.950000
testis_male_adult_54_years	chr4	42267009	42267010	42267009	+	High_confidence	47	48	49	1.819469	5.011842	chr4	42265755	42267319	LTR|ERV1|LTR12C	+	chr4	42266997	42274673	STRG.93492.1	+	42266997,42274329	42267319,42274673	0.734694
testis_male_adult_54_years	chr19	17566032	17566055	17566032	+	High_confidence	3	4	7	0.259924	2.807355	chr19	17566082	17566385	SINE|Alu|AluSz	+	chr19	17566032	17571924	COLGALT1|ENST00000601354.1	+	17566032,17567405,17568508,17571869	17566183,17567540,17568713,17571924	0.571429
testis_male_adult_54_years	chr5	99919812	99919819	99919818	+	High_confidence	5	5	10	0.371320	3.169925	chr5	99919607	99920242	LTR|ERV1|LTR12_	+	chr5	99919829	99920348	STRG.123079.1	+	99919829	99920348	0.700000
testis_male_adult_54_years	chr1	84479010	84479011	84479010	+	High_confidence	10	11	11	0.408452	3.459432	chr1	84478881	84479033	LINE|L2|L2a	+	chr1	84479236	84498350	RPF1|NM_025065.6	+	84479236,84480955,84482914,84489632,84490318,84495372,84495881,84496243,84497428	84479509,84481012,84482995,84489728,84490472,84495455,84496063,84496370,84498350	1.000000
testis_male_adult_54_years	chr4	137734567	137734568	137734567	+	High_confidence	131	134	165	6.126782	4.146211	chr4	137733562	137734980	LTR|ERV1|LTR12C	+	chr4	137734586	137735170	STRG.103858.1	+	137734586	137735170	0.939394
testis_male_adult_54_years	chr1	214823460	214823514	214823512	+	High_confidence	9	15	33	1.225356	4.736297	chr1	214823074	214824392	LINE|L1|L1PB1	-	chr1	214823401	214827158	STRG.24445.1	+	214823401,214825954	214824101,214827158	0.818182
testis_male_adult_54_years	chr19	9140379	9140428	9140393	+	High_confidence	27	27	123	4.567237	6.179806	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9161433	STRG.332303.3	+	9140396,9155924,9156611,9157979,9158825,9160113	9140592,9156041,9157394,9158075,9158908,9161433	0.764228
testis_male_adult_54_years	chr1	180095146	180095170	180095150	+	High_confidence	57	58	165	6.126782	6.233042	chr1	180095060	180095230	SINE|tRNA|LFSINE_Vert	-	chr1	180095146	180114875	STRG.20554.11	+	180095146,180095522,180098862,180110996	180095198,180095930,180098985,180114875	0.975758
testis_male_adult_54_years	chr12	119179278	119179312	119179296	+	High_confidence	8	8	21	0.779772	3.021928	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.904762
testis_male_adult_54_years	chr4	73080828	73080876	73080828	-	High_confidence	6	6	25	0.928300	4.453661	chr4	73080811	73080939	SINE|Alu|FAM	-	chr4	73077368	73080810	ANKRD17|ENST00000510127.1	-	73077368,73078641,73080720	73077533,73078890,73080810	0.720000
testis_male_adult_54_years	chr7	23193623	23193643	23193623	+	High_confidence	2	2	8	0.297056	2.750000	chr7	23192854	23194291	LTR|ERV1|LTR12C	-	chr7	23194402	23201011	NUPL2|ENST00000477844.1	+	23194402,23196679,23199457,23200167	23195915,23196766,23199542,23201011	0.500000
testis_male_adult_54_years	chr8	143039227	143039267	143039256	+	High_confidence	7	7	27	1.002564	4.606739	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039260	143053444	C8orf31|ENST00000524181.5	+	143039260,143042957,143043177,143044173,143044648,143047678,143049208,143053225	143039569,143043087,143043262,143044234,143044817,143047814,143049298,143053444	0.925926
testis_male_adult_54_years	chr17	45627378	45627390	45627378	+	RAMPAGE_only	2	3	11	0.408452	3.121928	chr17	45627353	45627650	SINE|Alu|AluSz	-	chr17	45621907	45636344	LINC02210|ENST00000580220.2	+	45621907,45627375,45629903,45636282	45622041,45627682,45630158,45636344	0.909091
testis_male_adult_54_years	chr13	84894246	84894247	84894246	-	High_confidence	69	69	70	2.599241	4.323112	chr13	84893961	84895112	LTR|ERV1|LTR12D	-	chr13	84881598	84894342	STRG.273022.1	-	84881598,84892193,84893952	84881631,84892328,84894342	0.685714
testis_male_adult_54_years	chr10	72355224	72355243	72355224	-	High_confidence	6	6	11	0.408452	3.277613	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332830	72355230	DNAJB12|ENST00000444643.6	-	72332830,72335779,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72334617,72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355230	1.000000
testis_male_adult_54_years	chr6	163411529	163411530	163411529	+	RAMPAGE_only	7	7	7	0.259924	2.807355	chr6	163411253	163411820	LINE|L2|L2a	-	chr6	163413999	163573800	QKI|ENST00000361758.8	+	163413999,163455278,163478779,163534981,163561981,163563419,163565945,163570693	163415335,163455421,163478896,163535125,163562069,163563719,163566795,163573800	0.714286
testis_male_adult_54_years	chr21	38155508	38155568	38155567	+	High_confidence	11	11	48	1.782337	4.941934	chr21	38155353	38155634	LINE|L2|L2a	-	chr21	38155548	38188016	KCNJ15|ENST00000472602.1	+	38155548,38156303,38156933,38169168,38187931	38155852,38156428,38157085,38169268,38188016	0.812500
testis_male_adult_54_years	chr4	168616845	168616882	168616845	+	High_confidence	12	12	50	1.856601	4.798563	chr4	168616844	168617261	LTR|ERVL-MaLR|MLT1J	+	chr4	168616856	168617186	STRG.107835.1	+	168616856	168617186	0.840000
testis_male_adult_54_years	chr8	22556302	22556315	22556302	+	High_confidence	3	3	18	0.668376	3.690117	chr8	22556182	22556415	SINE|MIR|MIRb	-	chr8	22556685	22564362	SORBS3|ENST00000524057.3	+	22556685,22558128,22561334,22561864,22563986,22564282	22556908,22558192,22561373,22561931,22564077,22564362	0.722222
testis_male_adult_54_years	chr11	123061128	123061257	123061256	-	High_confidence	145	148	428	15.892501	6.257713	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.943925
testis_male_adult_54_years	chr9	27093583	27093587	27093586	+	RAMPAGE_only	19	20	30	1.113960	4.389898	chr9	27092472	27093900	LTR|ERV1|LTR12C	+	chr9	27092358	27094366	STRG.199802.1	+	27092358	27094366	0.866667
testis_male_adult_54_years	chr7	22179699	22179734	22179710	-	RAMPAGE_only	9	9	30	1.113960	4.444188	chr7	22179495	22180104	LTR|ERV1|MER41B	+	chr7	22157863	22183268	STRG.160516.6	-	22157863,22160517,22162396,22167069,22178564,22179561	22157885,22160615,22162541,22167148,22178725,22183268	0.633333
testis_male_adult_54_years	chr10	27983452	27983457	27983452	-	RAMPAGE_only	3	3	9	0.334188	2.750000	chr10	27982876	27983540	LTR|ERVL|LTR50	+	chr10	27812169	27997744	STRG.216115.1	-	27812169,27860624,27862433,27907662,27935009,27936725,27939896,27940562,27944221,27944815,27961567,27968922,27971107,27981465,27982928,27984183,27985018,27987385,27994918,27995648,27997490	27812625,27860846,27862622,27907777,27935252,27936880,27940007,27940805,27944431,27944962,27961715,27969018,27971313,27981582,27983979,27984290,27985211,27987543,27995180,27995723,27997744	0.666667
testis_male_adult_54_years	chr2	38836124	38836135	38836124	+	High_confidence	5	5	18	0.668376	3.836592	chr2	38834351	38836493	DNA|TcMar-Tigger|Tigger2	+	chr2	38835477	38842931	STRG.34695.1	+	38835477,38842867	38836407,38842931	0.777778
testis_male_adult_54_years	chr1	105483621	105483640	105483621	-	High_confidence	2	2	7	0.259924	2.584963	chr1	105482989	105484133	LTR|ERV1|LTR49-int	+	chr1	105473265	105483630	STRG.13889.1	-	105473265,105483094	105473784,105483630	0.857143
testis_male_adult_54_years	chr4	4585522	4585564	4585529	+	High_confidence	4	4	20	0.742640	3.892407	chr4	4585405	4585928	LTR|ERVL-MaLR|MLT1A0-int	+	chr4	4584955	4588284	STRG.88153.1	+	4584955	4588284	0.950000
testis_male_adult_54_years	chr18	39800293	39800314	39800313	-	High_confidence	34	42	157	5.829726	6.457364	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.528662
testis_male_adult_54_years	chr15	86316939	86316964	86316944	-	RAMPAGE_only	97	98	231	8.577495	6.710247	chr15	86316880	86317036	SINE|tRNA|LFSINE_Vert	+	chr15	86295648	86304981	AGBL1-AS1|ENST00000564487.1	-	86295648,86299735,86304911	86297074,86299881,86304981	0.536797
testis_male_adult_54_years	chr16	58684319	58684331	58684330	-	High_confidence	57	57	215	7.983382	6.750941	chr16	58684185	58684294	SINE|MIR|MIR1_Amn	-	chr16	58667277	58684181	SLC38A7|ENST00000566598.5	-	58667277,58670112,58671044,58672095,58675939,58676288,58677325,58678332,58678695,58679856,58683954	58667487,58670167,58671244,58672243,58676022,58676346,58677424,58678474,58678894,58680241,58684181	0.893023
testis_male_adult_54_years	chr7	137268114	137268178	137268177	-	High_confidence	13	14	59	2.190789	5.085702	chr7	137267941	137268351	LTR|ERV1|HERVE_a-int	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.983051
testis_male_adult_54_years	chr2	55618850	55618903	55618850	-	High_confidence	8	8	32	1.188224	4.386143	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.906250
testis_male_adult_54_years	chr6	38612975	38612996	38612975	-	RAMPAGE_only	5	5	13	0.482716	3.584963	chr6	38612953	38613271	DNA|hAT-Charlie|MER33	+	chr6	38594235	38639868	BTBD9|ENST00000498633.1	-	38594235,38597909,38612833,38639799	38594327,38598121,38613033,38639868	0.615385
testis_male_adult_54_years	chr12	123260437	123260450	123260437	-	High_confidence	2	2	7	0.259924	2.584963	chr12	123260008	123260594	LTR|ERV1|LTR10C	+	chr12	123252029	123260447	AC068768.1|ENST00000543217.6	-	123252029,123259042,123260273	123252542,123259148,123260447	0.571429
testis_male_adult_54_years	chrX	101293057	101293087	101293082	-	High_confidence	15	30	79	2.933429	5.706251	chrX	101292998	101293671	LINE|RTE-X|L4_A_Mam	+	chrX	101268252	101293071	TAF7L|NM_024885.3	-	101268252,101275221,101275999,101276306,101277605,101278048,101278993,101281719,101282326,101283449,101286574,101287477,101292789	101269237,101275281,101276112,101276528,101277719,101278121,101279035,101281775,101282453,101283583,101286653,101287545,101293071	0.822785
testis_male_adult_54_years	chr3	37177260	37177261	37177260	-	High_confidence	9	10	10	0.371320	3.169925	chr3	37176997	37177246	LINE|L2|L2c	-	chr3	37075023	37176532	LRRFIP2|ENST00000416425.5	-	37075023,37083635,37091466,37094791,37096615,37129062,37148893,37174538,37176368	37075116,37083806,37091538,37094908,37096660,37129149,37149038,37174605,37176532	0.900000
testis_male_adult_54_years	chr11	33015670	33015703	33015702	-	High_confidence	6	6	12	0.445584	3.584963	chr11	33015347	33015654	SINE|Alu|AluSx1	-	chr11	33003044	33015814	STRG.232932.1	-	33003044,33015276	33003890,33015814	0.833333
testis_male_adult_54_years	chr13	49255306	49255312	49255311	+	RAMPAGE_only	40	60	89	3.304749	5.732042	chr13	49254945	49255438	LTR|ERVL-MaLR|MLT1D	-	chr13	49247976	49293485	STRG.268050.2	+	49247976,49248870,49255838,49265878,49267489,49274290,49278349,49280508,49286221,49291683	49248119,49248965,49259523,49266003,49268059,49274340,49278519,49280698,49286282,49293485	0.696629
testis_male_adult_54_years	chr7	6054548	6054573	6054548	-	RAMPAGE_only	3	3	13	0.482716	3.418296	chr7	6054207	6054503	SINE|Alu|AluSx1	-	chr7	6046722	6059056	EIF2AK1|ENST00000463213.5	-	6046722,6048806,6049911,6054545,6058965	6047091,6048844,6050045,6054704,6059056	0.538462
testis_male_adult_54_years	chr12	91634218	91634237	91634226	-	High_confidence	30	38	110	4.084521	5.853976	chr12	91633760	91635553	LTR|ERV1|LTR12C	+	chr12	91633416	91634561	STRG.258508.5	-	91633416	91634561	0.854545
testis_male_adult_54_years	chr1	170025880	170025914	170025905	-	RAMPAGE_only	10	13	40	1.485280	5.021928	chr1	170025870	170026314	LTR|ERVL-MaLR|MLT1C	+	chr1	169921328	170068915	KIFAP3|NM_001204517.1	-	169921328,169954010,169961045,169972512,169978084,169981971,169982701,169983269,169984581,169992154,170016461,170024417,170031885,170034371,170035453,170038289,170039232,170046711,170055304,170067503	169921781,169954110,169961235,169972598,169978183,169982097,169982867,169983382,169984690,169992255,170016624,170024596,170031984,170034496,170035553,170038431,170039288,170046866,170055436,170068915	0.650000
testis_male_adult_54_years	chr12	67729422	67729447	67729436	-	High_confidence	16	22	82	3.044825	4.744353	chr12	67729316	67729555	LTR|ERVL-MaLR|MSTC	-	chr12	67718266	67729453	STRG.255429.1	-	67718266,67722378,67729395	67718541,67722713,67729453	0.841463
testis_male_adult_54_years	chr6	34649790	34649814	34649796	-	RAMPAGE_only	3	3	13	0.482716	3.418296	chr6	34649762	34649863	LINE|L2|L2a	+	chr6	34590508	34671956	C6orf106|ENST00000374021.1	-	34590508,34606554,34646600,34654624,34671835	34590600,34606904,34646798,34654779,34671956	0.615385
testis_male_adult_54_years	chr7	71284049	71284051	71284050	+	High_confidence	6	8	12	0.445584	3.095795	chr7	71283790	71284249	LTR|ERV1|LTR12_	+	chr7	71283995	71713600	GALNT17|ENST00000498380.6	+	71283995,71335549,71388234,71415888,71420907,71571284,71665410,71669971,71677210,71710760,71712017	71284635,71335733,71388401,71416063,71421105,71571402,71665596,71670109,71677306,71710928,71713600	0.750000
testis_male_adult_54_years	chr5	115153780	115153781	115153780	-	High_confidence	15	15	21	0.779772	4.121928	chr5	115153510	115153791	SINE|Alu|AluSx	-	chr5	115141323	115153811	TRIM36|ENST00000513485.5	-	115141323,115144597,115147068,115153704	115141374,115144744,115147394,115153811	0.571429
testis_male_adult_54_years	chr1	56172843	56172847	56172843	-	High_confidence	4	6	12	0.445584	3.418296	chr1	56172723	56173165	LINE|L1|L1MCb	-	chr1	56165805	56172730	AC119674.1|ENST00000641355.1	-	56165805,56168238,56172555	56166159,56168342,56172730	0.500000
testis_male_adult_54_years	chr21	44305173	44305186	44305185	+	High_confidence	22	29	63	2.339317	5.335414	chr21	44305083	44305240	SINE|MIR|MIRc	+	chr21	44305193	44313954	PFKL|ENST00000491298.1	+	44305193,44306680,44311005,44312104,44312977,44313637,44313912	44305417,44306754,44311083,44312294,44313143,44313682,44313954	0.825397
testis_male_adult_54_years	chr13	77997843	77997881	77997843	-	High_confidence	17	19	73	2.710637	5.763531	chr13	77997705	77998024	LTR|ERVL-MaLR|MLT1I	+	chr13	77980385	77997839	STRG.271968.1	-	77980385,77989371,77990337,77997815	77981984,77989608,77990646,77997839	0.821918
testis_male_adult_54_years	chr18	14261451	14261474	14261466	+	RAMPAGE_only	7	9	17	0.631244	3.101881	chr18	14259988	14261514	LTR|ERVL-MaLR|MSTA-int	+	chr18	14259351	14264823	STRG.324735.26	+	14259351	14264823	0.941176
testis_male_adult_54_years	chr17	35809884	35809906	35809905	+	High_confidence	7	7	15	0.556980	3.378783	chr17	35809910	35810033	SINE|MIR|MIR1_Amn	+	chr17	35809505	35824289	TAF15|ENST00000605197.2	+	35809505,35817715,35820023,35820163,35820331,35822639,35824077	35809576,35817755,35820075,35820248,35820437,35822833,35824289	0.800000
testis_male_adult_54_years	chrX	125155015	125155016	125155015	-	High_confidence	365	366	400	14.852804	5.271440	chrX	125154598	125156024	LTR|ERV1|LTR12C	-	chrX	125153619	125154997	STRG.368420.1	-	125153619	125154997	0.942500
testis_male_adult_54_years	chr13	114076084	114076098	114076097	+	High_confidence	2	2	8	0.297056	2.807355	chr13	114076122	114076217	SINE|MIR|MIR3	+	chr13	114075720	114076600	STRG.276849.1	+	114075720	114076600	0.500000
testis_male_adult_54_years	chrX	43604207	43604238	43604207	+	High_confidence	9	9	34	1.262488	4.653496	chrX	43604087	43604523	LTR|ERVL|MLT2F	+	chrX	43604173	43605450	STRG.362295.1	+	43604173	43605450	0.970588
testis_male_adult_54_years	chr4	88361426	88361460	88361459	+	High_confidence	102	104	161	5.978254	5.822963	chr4	88360904	88361805	LTR|ERV1|LTR12D	+	chr4	88361435	88363967	STRG.97432.1	+	88361435,88362049	88361945,88363967	0.956522
testis_male_adult_54_years	chr9	92829026	92829027	92829026	+	RAMPAGE_only	6	6	6	0.222792	2.584963	chr9	92828933	92829639	LINE|L1|L1MA4A	+	chr9	92813906	92838457	ANKRD19P|ENST00000464387.5	+	92813906,92818317,92819241,92822209,92826524,92828937,92836776,92838256	92814047,92818424,92819379,92822277,92826578,92829163,92837740,92838457	0.666667
testis_male_adult_54_years	chr2	121902639	121902731	121902669	+	High_confidence	8	8	29	1.076828	4.582119	chr2	121902629	121902713	LINE|CR1|L3	-	chr2	121902440	121980614	STRG.45121.1	+	121902440,121944333	121902989,121980614	0.620690
testis_male_adult_54_years	chr3	182001178	182001179	182001178	+	High_confidence	4	4	6	0.222792	2.584963	chr3	182001165	182001416	LINE|L2|L2b	-	chr3	182000784	182002883	LINC01206|ENST00000628621.1	+	182000784,182002773	182001367,182002883	0.500000
testis_male_adult_54_years	chr3	155462169	155462201	155462188	+	High_confidence	7	7	36	1.336752	4.815623	chr3	155461924	155462306	LTR|ERVL|ERVL-B4-int	+	chr3	155462215	155487121	STRG.80925.1	+	155462215,155485397,155486960	155462416,155486049,155487121	0.888889
testis_male_adult_54_years	chr12	31118198	31118232	31118198	-	High_confidence	6	6	18	0.668376	3.734522	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.555556
testis_male_adult_54_years	chr14	88594397	88594459	88594397	+	High_confidence	113	151	588	21.833623	6.510066	chr14	88594314	88594398	DNA?|DNA?|MER134	+	chr14	88594398	88611886	ZC3H14|ENST00000318308.10	+	88594398,88596733,88607242,88609266,88609714,88610833,88611744	88595111,88596808,88607363,88609403,88609803,88610940,88611886	0.974490
testis_male_adult_54_years	chr1	193073616	193073632	193073616	+	RAMPAGE_only	45	49	167	6.201046	6.398063	chr1	193073592	193073745	SINE|Alu|AluSx	-	chr1	193069015	193084866	TROVE2|ENST00000367441.1	+	193069015,193075819,193076500,193076912,193081363,193082185,193082561,193084578	193069634,193076040,193076647,193077050,193081480,193082299,193082708,193084866	0.988024
testis_male_adult_54_years	chr12	107736453	107736490	107736478	-	RAMPAGE_only	12	14	30	1.113960	3.851823	chr12	107736110	107737101	LINE|L2|L2a	-	chr12	107732865	107761137	PRDM4|NM_012406.3	-	107732865,107739382,107740945,107742220,107743196,107744542,107746274,107751414,107753923,107756831,107760504,107760956	107734522,107739551,107741260,107742348,107743282,107744661,107746424,107752209,107754109,107756965,107760771,107761137	0.900000
testis_male_adult_54_years	chr13	80278060	80278061	80278060	-	High_confidence	35	35	36	1.336752	4.493150	chr13	80277751	80279185	LTR|ERV1|LTR12C	-	chr13	80277681	80278048	STRG.272180.1	-	80277681	80278048	0.750000
testis_male_adult_54_years	chr10	81503636	81503637	81503636	+	High_confidence	87	87	89	3.304749	5.226961	chr10	81502670	81504049	LTR|ERV1|LTR12C	+	chr10	81503643	81504463	STRG.222121.1	+	81503643	81504463	0.966292
testis_male_adult_54_years	chr10	125752064	125752081	125752080	-	High_confidence	53	55	201	7.463534	7.081833	chr10	125751632	125752271	LTR|ERVL|MER77	-	chr10	125744821	125752078	EDRF1-AS1|ENST00000610534.4	-	125744821,125745538,125749374,125750439,125751984	125744890,125745885,125749528,125750481,125752078	0.537313
testis_male_adult_54_years	chr17	64230696	64230734	64230728	-	High_confidence	32	48	155	5.755462	6.394834	chr17	64230696	64230803	SINE|MIR|MIR3	+	chr17	64147432	64230756	TEX2|NM_001288733.1	-	64147432,64150840,64152944,64154841,64160800,64171099,64177324,64188167,64193558,64194894,64212573,64230608	64149091,64150961,64153154,64154967,64160933,64171199,64177471,64188415,64193889,64195095,64214242,64230756	0.922581
testis_male_adult_54_years	chr19	34675793	34675805	34675802	+	RAMPAGE_only	11	11	30	1.113960	4.593069	chr19	34675656	34676296	LTR|ERV1|LTR12_	-	chr19	34677638	34686397	ZNF302|NM_001289187.1	+	34677638,34678736,34682776,34683154,34684251	34678103,34678813,34682897,34683238,34686397	0.700000
testis_male_adult_54_years	chr17	52603738	52603741	52603738	-	High_confidence	8	8	15	0.556980	3.235926	chr17	52603566	52603924	LTR|ERVL-MaLR|THE1D	-	chr17	52601652	52603026	STRG.319248.1	-	52601652	52603026	0.600000
testis_male_adult_54_years	chr5	151687173	151687200	151687173	-	High_confidence	4	4	13	0.482716	3.584963	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.923077
testis_male_adult_54_years	chrX	134794076	134794077	134794076	-	High_confidence	17	17	23	0.854036	4.106603	chrX	134794054	134794302	DNA|hAT-Charlie|Charlie17a	+	chrX	134771573	134794507	STRG.369129.6	-	134771573,134773360,134785885,134787471,134788729,134789084,134789222,134793814	134773091,134781917,134785947,134787533,134788831,134789139,134789266,134794507	0.869565
testis_male_adult_54_years	chr10	91199273	91199285	91199284	+	RAMPAGE_only	3	3	9	0.334188	2.750000	chr10	91199219	91199592	LTR|ERVL|LTR16A	-	chr10	91189982	91284329	STRG.223132.1	+	91189982,91222688,91240483,91248504,91248664,91251291,91261325,91264430,91271637,91278268,91279780	91190351,91222983,91240580,91248560,91248724,91251440,91261424,91264520,91271697,91279369,91284329	0.777778
testis_male_adult_54_years	chr11	125883620	125883640	125883620	+	High_confidence	45	45	77	2.859165	4.786477	chr11	125883587	125883884	SINE|Alu|AluSx	+	chr11	125883617	125888854	STRG.244777.4	+	125883617,125886605	125884017,125888854	0.818182
testis_male_adult_54_years	chr7	96358354	96358367	96358354	+	High_confidence	2	2	6	0.222792	2.584963	chr7	96358348	96359121	LTR|ERV1|LTR17	-	chr7	96358576	96359733	STRG.169232.1	+	96358576	96359733	0.666667
testis_male_adult_54_years	chr7	77258100	77258138	77258122	-	High_confidence	4	4	18	0.668376	4.058814	chr7	77257949	77258358	LTR|ERVL|LTR16A1	-	chr7	77246339	77258123	AC098851.1|ENST00000476561.2	-	77246339,77255325,77257200,77257906	77246487,77255475,77257255,77258123	0.500000
testis_male_adult_54_years	chr9	107324968	107324996	107324995	+	RAMPAGE_only	4	4	10	0.371320	2.725481	chr9	107325045	107325341	SINE|Alu|AluSx	+	chr9	107284768	107332194	RAD23B|NM_001244713.1	+	107284768,107300140,107302034,107306378,107311681,107318751,107321982,107323889,107324833,107329542	107284913,107300222,107302114,107306647,107311737,107318879,107322118,107324017,107325004,107332194	0.800000
testis_male_adult_54_years	chr5	134611108	134611123	134611108	-	RAMPAGE_only	96	96	228	8.466099	5.772780	chr5	134610883	134611163	SINE|Alu|AluJr4	-	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.833333
testis_male_adult_54_years	chr4	131379753	131379766	131379759	+	High_confidence	146	147	531	19.717098	6.569736	chr4	131379190	131380342	LTR|ERV1|LTR12D	+	chr4	131379755	131553246	STRG.103146.2	+	131379755,131527229,131551885	131380341,131527288,131553246	0.951036
testis_male_adult_54_years	chr1	205099756	205099777	205099775	-	High_confidence	4	6	10	0.371320	3.169925	chr1	205099767	205099820	LINE|RTE-BovB|MamRTE1	-	chr1	205093605	205100681	STRG.23434.4	-	205093605,205096681,205098988,205099740,205099910,205100151	205095064,205097395,205099106,205099812,205100064,205100681	0.900000
testis_male_adult_54_years	chr5	173614822	173614834	173614833	-	RAMPAGE_only	107	118	185	6.869422	6.800684	chr5	173614782	173614871	DNA|TcMar-Tigger|MER44B	-	chr5	173607798	173616358	BOD1|ENST00000477985.1	-	173607798,173609237,173616199	173608292,173609434,173616358	0.713514
testis_male_adult_54_years	chr19	11539484	11539508	11539502	+	High_confidence	6	8	20	0.742640	3.932138	chr19	11539471	11539592	SINE|MIR|MIRc	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	0.950000
testis_male_adult_54_years	chr13	102667836	102667867	102667836	+	RAMPAGE_only	1	1	9	0.334188	2.750000	chr13	102667823	102668345	LTR|ERVK|LTR22E	-	chr13	102656981	102674411	TPP2|ENST00000482393.1	+	102656981,102663647,102664794,102667757,102674282	102657207,102663744,102664936,102667883,102674411	0.555556
testis_male_adult_54_years	chr7	131108707	131108708	131108707	-	RAMPAGE_only	28	28	32	1.188224	4.319903	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944159	131109916	LINC-PINT|NR_109854.1	-	130944159,130945719,130984052,131052424,131107719,131109736	130944889,130945791,130984109,131052555,131108803,131109916	0.937500
testis_male_adult_54_years	chr19	57352731	57352732	57352731	+	RAMPAGE_only	5	5	7	0.259924	2.521641	chr19	57352568	57353037	LINE|L2|L2	-	chr19	57351491	57359898	ZNF304|ENST00000282286.5	+	57351491,57353724,57356029	57351697,57353851,57359898	0.714286
testis_male_adult_54_years	chr1	221234000	221234035	221234034	+	High_confidence	52	52	82	3.044825	5.552511	chr1	221233625	221234356	LTR|ERV1|LTR12D	+	chr1	221233992	221234613	STRG.25411.1	+	221233992	221234613	0.926829
testis_male_adult_54_years	chr20	37297344	37297345	37297344	+	High_confidence	16	18	22	0.816904	4.321928	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.909091
testis_male_adult_54_years	chr1	86523498	86523499	86523498	-	High_confidence	89	91	101	3.750333	5.730125	chr1	86523128	86524369	LTR|ERV1|LTR12C	-	chr1	86522568	86523486	STRG.11662.1	-	86522568	86523486	0.891089
testis_male_adult_54_years	chr7	155667653	155667695	155667657	+	RAMPAGE_only	16	17	76	2.822033	5.737995	chr7	155667412	155667718	LINE|L1|L1MC4	-	chr7	155672879	155745720	RBM33|ENST00000307403.6	+	155672879,155678607,155680589,155700772,155706859,155707293,155711202,155718384,155737529,155738059,155741818,155744960	155672915,155678684,155680908,155700944,155707068,155707380,155711455,155718443,155737662,155740026,155742106,155745720	0.907895
testis_male_adult_54_years	chr2	183123057	183123069	183123068	+	RAMPAGE_only	4	4	8	0.297056	3.000000	chr2	183122827	183123284	LTR|ERVL-MaLR|MLT1D	+	chr2	183124354	183161680	NUP35|ENST00000295119.8	+	183124354,183128286,183130417,183133565,183151507,183157443,183158282,183159487,183161053	183124497,183128457,183130545,183133623,183151649,183157513,183158411,183159652,183161680	0.875000
testis_male_adult_54_years	chr12	14419187	14419230	14419187	+	High_confidence	20	20	64	2.376449	4.986746	chr12	14419086	14419311	SINE|MIR|MIR	-	chr12	14419187	14425461	ATF7IP|ENST00000396279.2	+	14419187,14423908	14419361,14425461	0.953125
testis_male_adult_54_years	chr2	130071536	130071579	130071536	-	RAMPAGE_only	9	9	32	1.188224	4.812500	chr2	130071362	130071704	LINE|L1|L1PA13	-	chr2	130056395	130128578	STRG.46537.4	-	130056395,130063037,130077080,130085813,130086342,130088066,130093437,130099469,130100675,130102109,130108008,130110542,130111994,130114880,130115213,130119994,130128042	130060694,130075572,130077201,130085995,130086387,130088137,130093508,130099636,130100720,130102180,130108079,130110680,130112101,130115054,130115328,130127954,130128578	1.000000
testis_male_adult_54_years	chr10	50964266	50964267	50964266	+	High_confidence	127	127	152	5.644066	5.769481	chr10	50963861	50964687	LTR|ERV1|LTR12D	+	chr10	50964269	50965220	AL731537.2|ENST00000561565.1	+	50964269	50965220	0.973684
testis_male_adult_54_years	chr3	133192539	133192575	133192563	+	High_confidence	2	2	13	0.482716	2.815072	chr3	133192199	133192592	LINE|L2|L2	-	chr3	133192774	133380171	TMEM108|ENST00000510183.1	+	133192774,133229269,133379751	133192827,133229351,133380171	1.000000
testis_male_adult_54_years	chr4	187930189	187930212	187930211	-	High_confidence	5	7	14	0.519848	3.521641	chr4	187927305	187930267	LINE|L1|L1PB1	-	chr4	187929611	187930009	STRG.110561.1	-	187929611	187930009	0.714286
testis_male_adult_54_years	chr14	105549097	105549098	105549097	+	RAMPAGE_only	207	207	252	9.357267	6.379889	chr14	105547655	105549512	LTR|ERV1|LTR12C	+	chr14	105546804	105561138	STRG.289805.3	+	105546804	105561138	0.972222
testis_male_adult_54_years	chr5	101042275	101042297	101042296	-	High_confidence	7	9	32	1.188224	4.238609	chr5	101042117	101042372	SINE|Alu|AluYc	+	chr5	101013022	101042314	STRG.123190.1	-	101013022,101031173,101042095	101013096,101031366,101042314	0.843750
testis_male_adult_54_years	chr5	108763428	108763475	108763474	+	RAMPAGE_only	29	38	90	3.341881	5.722750	chr5	108763191	108763781	LTR|ERVL|LTR40A1	-	chr5	108761893	108955031	STRG.124443.3	+	108761893,108768092,108798123,108832769,108835707,108867766,108871364,108872092,108883395,108897658,108946129,108954728	108763560,108768238,108798389,108832943,108835807,108867950,108871502,108872212,108883518,108897848,108946222,108955031	0.700000
testis_male_adult_54_years	chr5	150507696	150507697	150507696	+	High_confidence	14	14	15	0.556980	3.521641	chr5	150507670	150507785	SINE|MIR|MIR3	-	chr5	150508111	150558211	NDST1|ENST00000261797.6	+	150508111,150520867,150527803,150532944,150534866,150535699,150539227,150540081,150541569,150542847,150545311,150548217,150549677,150551752,150553212	150508226,150521767,150528298,150533032,150535021,150535885,150539356,150540264,150541666,150542971,150545486,150548388,150549787,150551855,150558211	0.866667
testis_male_adult_54_years	chr16	22091956	22091959	22091956	+	High_confidence	27	32	42	1.559544	4.958354	chr16	22091884	22092045	DNA|hAT-Charlie|MER5A	+	chr16	22092537	22156966	VWA3A|NM_173615.4	+	22092537,22096858,22097571,22100193,22100415,22103474,22109481,22110887,22115346,22116758,22117110,22118901,22120967,22121513,22123084,22123612,22126177,22131204,22131584,22132899,22134367,22138359,22140153,22141581,22142667,22144246,22146235,22148161,22149786,22150694,22152510,22155566,22155850,22156031	22092651,22096945,22097695,22100318,22100493,22103529,22109580,22110994,22115472,22116867,22117176,22119027,22121103,22121617,22123165,22123707,22126297,22131279,22131729,22133095,22134438,22138512,22140244,22141692,22142765,22144384,22146344,22148306,22149931,22150846,22152634,22155664,22155916,22156966	0.785714
testis_male_adult_54_years	chr1	48926014	48926029	48926028	+	High_confidence	10	10	44	1.633808	4.968303	chr1	48925961	48926131	DNA?|DNA?|Eulor2A	+	chr1	48926122	48936619	STRG.6448.1	+	48926122,48936357	48926216,48936619	0.613636
testis_male_adult_54_years	chr5	55766886	55766887	55766886	+	High_confidence	10	10	12	0.445584	3.418296	chr5	55766922	55766980	DNA|hAT-Charlie|MER5A	+	chr5	55766884	55817146	DDX4|NM_001166534.1	+	55766884,55767880,55781065,55781933,55785446,55785728,55786517,55787845,55790575,55792640,55798425,55813672,55814900,55815312,55816462	55766966,55767940,55781146,55781981,55785494,55785871,55786670,55788000,55790705,55792807,55798571,55813772,55815171,55815423,55817146	0.833333
testis_male_adult_54_years	chr1	89688842	89688846	89688845	+	RAMPAGE_only	7	7	12	0.445584	3.584963	chr1	89688655	89689213	LTR|ERVL?|LTR87	-	chr1	89633084	89719535	LRRC8C|NM_032270.4	+	89633084,89686469,89712708	89633322,89686611,89719535	0.666667
testis_male_adult_54_years	chr2	27111101	27111102	27111101	-	RAMPAGE_only	41	42	59	2.190789	4.745624	chr2	27110684	27112017	LTR|ERV1|LTR12C	-	chr2	27101112	27119030	CGREF1|ENST00000312734.8	-	27101112,27102096,27102359,27102525,27104286,27110672,27118845	27101888,27102221,27102430,27102591,27104377,27110968,27119030	0.881356
testis_male_adult_54_years	chr13	60618876	60618894	60618876	-	High_confidence	92	94	302	11.213867	6.196373	chr13	60618576	60619074	LTR|ERVL-MaLR|MLT1F	-	chr13	60616423	60618885	STRG.269783.1	-	60616423,60617564,60618833	60616936,60617832,60618885	0.933775
testis_male_adult_54_years	chr13	57286506	57286524	57286506	+	High_confidence	6	6	10	0.371320	2.921928	chr13	57285459	57287161	LTR|ERV1|LTR12C	-	chr13	57286538	57408294	STRG.269582.1	+	57286538,57408217	57287202,57408294	0.700000
testis_male_adult_54_years	chr2	205874486	205874487	205874486	-	High_confidence	42	43	46	1.708073	5.208411	chr2	205874090	205874705	LTR|ERV1|LTR12_	-	chr2	205873590	205874842	STRG.56258.1	-	205873590	205874842	0.826087
testis_male_adult_54_years	chr8	100618522	100618537	100618536	+	High_confidence	49	49	80	2.970561	5.573499	chr8	100618426	100619138	LTR|ERVL|MER21B	-	chr8	100618580	100619993	AP001205.1|ENST00000521625.5	+	100618580,100619074,100619812	100618764,100619158,100619993	0.950000
testis_male_adult_54_years	chr1	13657955	13657995	13657994	+	High_confidence	3	3	11	0.408452	3.277613	chr1	13657370	13659077	Retroposon|SVA|SVA_D	+	chr1	13657393	13670971	STRG.924.1	+	13657393,13670472	13658224,13670971	0.909091
testis_male_adult_54_years	chr20	57349256	57349257	57349256	+	High_confidence	144	144	151	5.606934	6.062126	chr20	57348213	57349645	LTR|ERV1|LTR12C	+	chr20	57349243	57350014	STRG.346745.10	+	57349243	57350014	0.920530
testis_male_adult_54_years	chr1	154208548	154208573	154208572	-	High_confidence	12	12	48	1.782337	4.580665	chr1	154208572	154208718	SINE|MIR|MIRb	-	chr1	154207229	154208517	C1orf43|ENST00000483282.1	-	154207229,154208480	154207648,154208517	0.916667
testis_male_adult_54_years	chr2	175257171	175257223	175257171	+	High_confidence	3	3	25	0.928300	4.501629	chr2	175256249	175257558	LTR|ERV1|LTR12C	-	chr2	175256914	175260583	STRG.51641.2	+	175256914,175260536	175260497,175260583	0.800000
testis_male_adult_54_years	chr17	8758510	8758554	8758545	-	High_confidence	26	28	97	3.601805	5.727872	chr17	8758497	8758567	DNA|hAT-Ac|OldhAT1	+	chr17	8753105	8758559	SPDYE4|ENST00000328794.10	-	8753105,8753320,8755519,8756377,8757261,8758273	8753197,8753489,8755605,8756436,8757492,8758559	0.865979
testis_male_adult_54_years	chr17	69196464	69196504	69196464	-	RAMPAGE_only	6	7	24	0.891168	4.501629	chr17	69195559	69197005	Retroposon|SVA|SVA_B	-	chr17	69148591	69225442	ABCA10|ENST00000518929.5	-	69148591,69149032,69149983,69152042,69152361,69153304,69154234,69155018,69155804,69156831,69164073,69164963,69174280,69174606,69175405,69182152,69182674,69185476,69187680,69190357,69191175,69192562,69193109,69193492,69193813,69194384,69196245,69197063,69214703,69215814,69216216,69219544,69221791,69222532,69225324	69148925,69149088,69150063,69152183,69152481,69154009,69154326,69155136,69155925,69156923,69164154,69165083,69174394,69174777,69175513,69182290,69182808,69185643,69187879,69190477,69191315,69192653,69193248,69193612,69193989,69194495,69196483,69197122,69214851,69216000,69216358,69219771,69221895,69222697,69225442	0.875000
testis_male_adult_54_years	chr19	44953653	44953665	44953653	-	High_confidence	2	2	7	0.259924	2.521641	chr19	44953631	44953838	LINE|L2|L2b	-	chr19	44949504	44952659	STRG.337858.1	-	44949504	44952659	0.571429
testis_male_adult_54_years	chr17	49248236	49248237	49248236	+	High_confidence	525	555	669	24.841315	7.487689	chr17	49247966	49248413	LINE|L2|L2b	-	chr17	49248238	49256449	FLJ40194|ENST00000322227.6	+	49248238,49252245,49252853,49254690	49248302,49252674,49252918,49256449	0.563528
testis_male_adult_54_years	chr11	78139172	78139173	78139172	-	High_confidence	4	4	7	0.259924	2.521641	chr11	78138792	78139208	LINE|L2|L2b	+	chr11	78121136	78139258	ALG8|ENST00000530910.5	-	78121136,78124020,78127357,78138709	78121174,78124214,78127436,78139258	1.000000
testis_male_adult_54_years	chr17	76302499	76302543	76302542	-	RAMPAGE_only	5	5	19	0.705508	3.932138	chr17	76302392	76302821	LTR|ERVL-MaLR|MLT1D	+	chr17	76274048	76307680	QRICH2|NM_032134.2	-	76274048,76275818,76276679,76277162,76277988,76279040,76279362,76280032,76280286,76280653,76280830,76281863,76287191,76287799,76289991,76291014,76304414,76304881,76307464	76274243,76275947,76276767,76277310,76278189,76279142,76279428,76280154,76280451,76280728,76280953,76282115,76287306,76287897,76290077,76294021,76304525,76304941,76307680	1.000000
testis_male_adult_54_years	chr7	56428388	56428415	56428399	-	RAMPAGE_only	4	5	24	0.891168	4.136842	chr7	56428205	56428743	DNA|hAT-Charlie|MER1A	-	chr7	56421856	56432702	AC092447.7|ENST00000422212.1	-	56421856,56423689,56426134,56426834,56432487	56422009,56424637,56426263,56427010,56432702	1.000000
testis_male_adult_54_years	chrX	111665836	111665837	111665836	+	RAMPAGE_only	11	13	15	0.556980	3.773557	chrX	111665612	111666014	LTR|ERVL|MLT2A1	+	chrX	111681117	111760649	ALG13|NM_001257230.1	+	111681117,111682235,111684964,111708026,111708964,111711674,111712483,111713224,111717845,111718111,111720094,111721602,111722792,111723797,111724933,111726808,111727331,111727613,111728184,111730394,111730524,111735050,111736713,111752789,111757587,111759733	111681299,111682294,111685103,111708393,111709048,111711725,111712530,111713297,111717927,111718274,111720170,111721711,111722857,111723898,111725061,111727055,111727445,111727770,111728305,111730427,111730580,111735122,111736879,111752830,111757762,111760649	0.533333
testis_male_adult_54_years	chr16	47451643	47451696	47451674	-	RAMPAGE_only	5	5	20	0.742640	4.247928	chr16	47451607	47451899	LTR|ERVL-MaLR|MLT1I	+	chr16	47154386	47461274	ITFG1|ENST00000320640.10	-	47154386,47158872,47161749,47162539,47218867,47237964,47258631,47260544,47311239,47313728,47365787,47375875,47428803,47451395,47452732,47454012,47459102,47460837	47155778,47158990,47161832,47162664,47218946,47238008,47258740,47260695,47311412,47313823,47365869,47375940,47428898,47451470,47452790,47454158,47459175,47461274	0.550000
testis_male_adult_54_years	chr7	77018747	77018748	77018747	+	RAMPAGE_only	4	4	6	0.222792	2.584963	chr7	77018689	77019076	LTR|ERVL-MaLR|MSTA	+	chr7	76980948	77023761	DTX2P1-UPK3BP1-PMS2P11|ENST00000584900.5	+	76980948,76990268,77000308,77002162,77004217,77005549,77011879,77013911,77015671,77018908,77023593	76981260,76990369,77000388,77002321,77004307,77005775,77012019,77013998,77015855,77018997,77023761	0.666667
testis_male_adult_54_years	chr4	130091007	130091008	130091007	+	High_confidence	60	60	80	2.970561	5.442526	chr4	130090413	130091418	LTR|ERV1|LTR12D	+	chr4	130091024	130092615	STRG.102858.1	+	130091024	130092615	0.950000
testis_male_adult_54_years	chr22	42580911	42580934	42580933	-	RAMPAGE_only	9	10	24	0.891168	4.061482	chr22	42580641	42581058	LINE|L2|L2b	+	chr22	42574732	42582001	RRP7BP|ENST00000566851.5	-	42574732,42575930,42576511,42576980,42577843,42580216,42581928	42574818,42576126,42576609,42577098,42577962,42580359,42582001	0.875000
testis_male_adult_54_years	chr1	74634718	74634737	74634736	-	High_confidence	6	7	10	0.371320	2.947703	chr1	74634428	74634790	LTR?|LTR?|MamRep605	+	chr1	74589326	74634855	ERICH3|ENST00000420661.6	-	74589326,74599694,74606600,74612622,74620733,74631712,74634664	74590080,74599931,74606902,74612809,74620914,74631928,74634855	0.900000
testis_male_adult_54_years	chr18	3481719	3481724	3481719	-	RAMPAGE_only	18	19	41	1.522412	5.028992	chr18	3481400	3481686	SINE|Alu|AluJr	-	chr18	3461817	3462451	STRG.323885.1	-	3461817	3462451	0.634146
testis_male_adult_54_years	chr8	120059777	120059778	120059777	+	High_confidence	15	16	16	0.594112	3.773557	chr8	120059600	120059954	LTR|ERVL-MaLR|THE1C	+	chr8	120059779	120232090	COL14A1|ENST00000498051.6	+	120059779,120071095,120105582,120107462,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120213934,120216350,120225087,120226626,120227219,120228709,120231466	120059871,120071165,120105627,120107514,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120214061,120216490,120225214,120226766,120227352,120228769,120232090	0.625000
testis_male_adult_54_years	chr7	150034606	150034607	150034606	+	High_confidence	7	7	7	0.259924	2.521641	chr7	150034133	150034733	LTR|ERV1|HERVE-int	-	chr7	150034265	150045092	STRG.177026.4	+	150034265,150035421,150037600,150037816,150039104,150044749	150035259,150036817,150037735,150038713,150042012,150045092	1.000000
testis_male_adult_54_years	chr11	36325018	36325038	36325037	-	RAMPAGE_only	7	8	22	0.816904	3.484184	chr11	36324976	36325756	LTR|ERV1|LTR17	-	chr11	36321157	36323440	AC087277.1|ENST00000529910.1	-	36321157,36323351	36321603,36323440	0.909091
testis_male_adult_54_years	chr20	57051528	57051552	57051528	-	High_confidence	11	11	21	0.779772	4.201841	chr20	57051325	57051755	DNA|TcMar-Tigger|Tigger3a	-	chr20	57049680	57050545	STRG.346700.1	-	57049680	57050545	0.857143
testis_male_adult_54_years	chr5	34684246	34684257	34684256	+	High_confidence	14	15	27	1.002564	4.392747	chr5	34684242	34684399	DNA|hAT-Charlie|MER5A	-	chr5	34684506	34832612	RAI14|NM_001145525.1	+	34684506,34685031,34686871,34688067,34757467,34795938,34803711,34807799,34808583,34811011,34811766,34812179,34813573,34814582,34818796,34821731,34822955,34826329,34829731,34830687	34684775,34685081,34686955,34688248,34757598,34796027,34803776,34807857,34808654,34811118,34811945,34812208,34813660,34814669,34818851,34821850,34824491,34826479,34829797,34832612	0.962963
testis_male_adult_54_years	chr2	9501341	9501359	9501350	-	RAMPAGE_only	16	16	49	1.819469	5.202804	chr2	9501079	9501359	LINE|L1|L1ME3Cz	+	chr2	9488636	9554729	ADAM17|ENST00000648548.1	-	9488636,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152,9551474,9554708	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526264,9527954,9535922,9536828,9543285,9551757,9554729	0.755102
testis_male_adult_54_years	chr2	40746224	40746299	40746224	-	High_confidence	11	11	68	2.524977	4.902119	chr2	40746162	40746658	LTR|ERV1|MER51A	+	chr2	40744427	40746158	STRG.34274.1	-	40744427	40746158	1.000000
testis_male_adult_54_years	chr18	9132779	9132781	9132779	-	High_confidence	7	9	13	0.482716	3.251629	chr18	9132594	9132890	SINE|Alu|AluJb	+	chr18	9121276	9133422	NDUFV2-AS1|ENST00000583081.1	-	9121276,9132222,9133390	9121456,9132409,9133422	0.846154
testis_male_adult_54_years	chr4	170979259	170979278	170979277	+	High_confidence	4	4	10	0.371320	3.169925	chr4	170979316	170979630	SINE|Alu|AluY	+	chr4	170979833	170994818	STRG.108030.1	+	170979833,170979925,170993736	170979884,170980128,170994818	0.900000
testis_male_adult_54_years	chr11	75979568	75979593	75979568	+	High_confidence	1	1	7	0.259924	2.584963	chr11	75974665	75980018	LINE|L1|L1PA6	-	chr11	75979525	76142651	UVRAG|ENST00000531818.5	+	75979525,75983386,76004004,76007533,76008806,76016814,76065709,76115923,76140710	75980038,75983513,76004089,76007621,76008867,76016980,76065788,76116015,76142651	0.857143
testis_male_adult_54_years	chr2	105042264	105042291	105042290	+	RAMPAGE_only	4	4	12	0.445584	3.459432	chr2	105042044	105042438	LTR|ERVL-MaLR|MLT1F2	-	chr2	105038024	105099960	MRPS9|NM_182640.2	+	105038024,105049170,105071312,105071458,105079982,105088983,105089919,105092400,105093529,105097154,105099669	105038227,105049350,105071375,105071489,105080062,105089069,105089995,105092569,105093638,105097324,105099960	0.833333
testis_male_adult_54_years	chr2	6866506	6866553	6866552	-	High_confidence	3	3	10	0.371320	3.321928	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	1.000000
testis_male_adult_54_years	chr16	35516965	35517013	35516965	+	RAMPAGE_only	2	2	10	0.371320	3.121928	chr16	35516603	35517040	LTR|ERVK|LTR3B_	+	chr16	35506292	35524564	STRG.305854.2	+	35506292,35517014,35522118	35508765,35517144,35524564	0.800000
testis_male_adult_54_years	chr17	45670889	45670890	45670889	-	High_confidence	42	44	51	1.893733	5.060283	chr17	45670673	45671070	LTR|ERV1|LTR12F	-	chr17	45656748	45670881	STRG.318448.1	-	45656748,45657685,45669067,45670829	45656783,45657823,45669163,45670881	0.588235
testis_male_adult_54_years	chr6	149614206	149614268	149614218	-	RAMPAGE_only	11	11	68	2.524977	5.565943	chr6	149614121	149614472	LINE|L1|L1M4c	+	chr6	149597129	149623111	KATNA1|ENST00000494504.5	-	149597129,149597506,149598223,149601593,149603267,149604660,149623102	149597189,149597641,149598350,149601799,149603373,149604782,149623111	0.794118
testis_male_adult_54_years	chr5	174804948	174804973	174804972	+	High_confidence	3	3	7	0.259924	2.521641	chr5	174804832	174805197	LTR|ERVL-MaLR|MLT1C	-	chr5	174804609	174809034	STRG.133134.1	+	174804609,174808667	174805547,174809034	0.857143
testis_male_adult_54_years	chr1	186268836	186268838	186268836	+	High_confidence	7	9	13	0.482716	3.392747	chr1	186268634	186269123	LINE|L1|L1MD1	+	chr1	186268807	186273499	STRG.21514.1	+	186268807,186273231	186268951,186273499	0.923077
testis_male_adult_54_years	chr5	83187224	83187230	83187229	+	RAMPAGE_only	5	5	9	0.334188	3.000000	chr5	83186941	83187242	SINE|Alu|AluYh7	-	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	0.555556
testis_male_adult_54_years	chr13	60144632	60144664	60144647	+	High_confidence	96	97	256	9.505795	6.436986	chr13	60144418	60144964	LTR|ERVL-MaLR|MLT1O	+	chr13	60144697	60153505	DIAPH3-AS2|NR_046540.1	+	60144697,60147254,60153395	60144863,60147345,60153505	0.730469
testis_male_adult_54_years	chr2	238722534	238722550	238722534	-	High_confidence	30	30	69	2.562109	4.532135	chr2	238722222	238723256	LTR|ERV1|LTR12D	-	chr2	238711428	238722533	STRG.60031.1	-	238711428,238712510,238715877,238722222	238711697,238712764,238715933,238722533	0.985507
testis_male_adult_54_years	chrX	152457315	152457344	152457343	-	RAMPAGE_only	4	8	19	0.705508	3.725481	chrX	152457257	152457564	SINE|Alu|AluY	-	chrX	152167161	152451359	GABRA3|NM_000808.3	-	152167161,152189729,152197632,152208000,152224762,152255777,152284667,152345580,152364430,152451145	152168563,152189941,152197785,152208144,152224845,152255998,152284735,152345702,152364596,152451359	0.736842
testis_male_adult_54_years	chr19	17576550	17576586	17576550	+	High_confidence	7	11	27	1.002564	3.921030	chr19	17576083	17576557	LINE|L2|L2b	-	chr19	17577074	17580870	COLGALT1|ENST00000597075.1	+	17577074,17577360,17577956,17579481,17580698	17577271,17577467,17578089,17579609,17580870	0.925926
testis_male_adult_54_years	chr13	95784636	95784662	95784636	+	High_confidence	2	2	10	0.371320	2.947703	chr13	95784243	95784783	LTR|ERVL|MER68	-	chr13	95784465	95794989	STRG.274341.3	+	95784465,95785938,95787006,95790872,95793384	95784709,95786071,95787155,95793363,95794989	0.900000
testis_male_adult_54_years	chr5	13407838	13407861	13407860	-	RAMPAGE_only	4	5	9	0.334188	2.725481	chr5	13407646	13408014	LTR|ERVL-MaLR|THE1B	-	chr5	13252458	13516485	STRG.113299.1	-	13252458,13396127,13516334	13253007,13396218,13516485	0.666667
testis_male_adult_54_years	chr20	25191790	25191806	25191794	-	RAMPAGE_only	13	16	36	1.336752	4.910992	chr20	25191623	25192078	LTR|ERVL|MER70A	-	chr20	25184671	25196892	LOC101926889|NR_109994.1	-	25184671,25186541,25186896,25187852,25190217,25196622	25186160,25186699,25186979,25187947,25190302,25196892	0.861111
testis_male_adult_54_years	chr6	157397515	157397516	157397515	+	RAMPAGE_only	7	7	9	0.334188	3.000000	chr6	157397254	157397733	LTR|ERVL-MaLR|MLT1D	-	chr6	157390019	157428630	STRG.155372.11	+	157390019,157402383	157401694,157428630	0.777778
testis_male_adult_54_years	chr4	86453341	86453342	86453341	-	High_confidence	8	8	12	0.445584	2.855389	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453325	MAPK10|ENST00000641313.1	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86354644,86453325	0.916667
testis_male_adult_54_years	chr3	41882243	41882259	41882243	-	RAMPAGE_only	3	3	6	0.222792	2.584963	chr3	41882164	41882376	LINE|L2|L2a	-	chr3	41800132	41854911	ULK4|ENST00000460406.1	-	41800132,41819422,41835863,41854081,41854869	41800293,41819506,41835971,41854176,41854911	0.833333
testis_male_adult_54_years	chr1	155478025	155478062	155478061	-	RAMPAGE_only	4	5	19	0.705508	3.350209	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.684211
testis_male_adult_54_years	chr2	218498384	218498391	218498384	-	High_confidence	17	17	33	1.225356	4.304229	chr2	218498225	218498424	DNA|hAT-Charlie|MER5A	-	chr2	218495774	218498413	USP37|ENST00000466523.5	-	218495774,218497733,218498025,218498252	218495950,218497857,218498157,218498413	0.666667
testis_male_adult_54_years	chr17	43508342	43508344	43508342	+	RAMPAGE_only	4	8	11	0.408452	2.521928	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	0.909091
testis_male_adult_54_years	chr13	45106213	45106255	45106213	+	High_confidence	17	20	51	1.893733	5.068692	chr13	45106172	45107077	LTR|ERV1|LTR28B	-	chr13	45106427	45107829	STRG.267512.1	+	45106427,45107657	45106676,45107829	0.882353
testis_male_adult_54_years	chr11	73647903	73647929	73647928	+	High_confidence	2	2	9	0.334188	3.000000	chr11	73647966	73648105	SINE|MIR|MIRc	+	chr11	73647688	73662812	STRG.237345.2	+	73647688,73649011,73650552,73651787,73652974,73660752,73661465,73661885	73647738,73649087,73650705,73651890,73653014,73660852,73661791,73662812	0.777778
testis_male_adult_54_years	chr2	186963165	186963166	186963165	+	High_confidence	456	461	638	23.690223	4.533406	chr2	186962104	186963583	LTR|ERV1|LTR12C	+	chr2	186963151	186965929	STRG.53469.2	+	186963151,186964997,186965714	186963684,186965115,186965929	0.971787
testis_male_adult_54_years	chr16	28952140	28952162	28952152	+	RAMPAGE_only	5	5	18	0.668376	3.836592	chr16	28952153	28952214	DNA|hAT-Ac|OldhAT1	+	chr16	28950996	28966465	NFATC2IP|NM_032815.3	+	28950996,28952131,28954564,28955977,28956150,28958716,28958990,28963704	28951398,28952204,28954682,28956058,28956337,28958861,28959100,28966465	0.666667
testis_male_adult_54_years	chr1	1879868	1879904	1879903	-	RAMPAGE_only	6	6	14	0.519848	3.807355	chr1	1879727	1879914	DNA|hAT-Charlie|Charlie1	-	chr1	1793244	1890401	GNB1|ENST00000434686.6	-	1793244,1804418,1806474,1815755,1817836,1825396,1839189,1839628,1890363	1793311,1804581,1806538,1815862,1817875,1825499,1839238,1839682,1890401	1.000000
testis_male_adult_54_years	chr11	93383434	93383466	93383465	+	High_confidence	8	8	17	0.631244	3.969816	chr11	93383131	93383641	LINE|L1|L1MB7	+	chr11	93383467	93438470	DEUP1|ENST00000525646.1	+	93383467,93385397,93389019,93394458,93396238,93408230,93414999,93437542	93383610,93385543,93389125,93394656,93396325,93408427,93415114,93438470	0.941176
testis_male_adult_54_years	chr2	46580305	46580342	46580320	+	High_confidence	5	6	19	0.705508	3.321104	chr2	46579857	46580733	LINE|L2|L2a	+	chr2	46580283	46581046	RHOQ|ENST00000489448.1	+	46580283,46580927	46580724,46581046	0.684211
testis_male_adult_54_years	chr21	25399314	25399340	25399339	-	RAMPAGE_only	11	21	36	1.336752	4.454822	chr21	25399099	25399571	LINE|L1|L1M1	+	chr21	25385240	25386504	STRG.349765.1	-	25385240	25386504	0.805556
testis_male_adult_54_years	chrX	65532814	65532838	65532814	-	RAMPAGE_only	4	6	11	0.408452	3.277613	chrX	65532780	65532966	LINE|L2|L2c	-	chrX	65512581	65534754	LAS1L|ENST00000374807.9	-	65512581,65514822,65517986,65523559,65524055,65524964,65528259,65529211,65529593,65531356,65532560,65533609,65534479	65512901,65514973,65518465,65523707,65524262,65525050,65528369,65529258,65529878,65531438,65532630,65533735,65534754	1.000000
testis_male_adult_54_years	chr6	37023464	37023478	37023464	-	High_confidence	18	19	29	1.076828	4.694019	chr6	37023460	37023592	DNA|TcMar-Tigger|Tigger19b	+	chr6	37021953	37023276	STRG.140722.1	-	37021953	37023276	0.793103
testis_male_adult_54_years	chr10	76315891	76315920	76315902	+	RAMPAGE_only	2	5	13	0.482716	3.584963	chr10	76315195	76316610	LTR|ERV1|MER52A	+	chr10	76318333	76560167	LRMDA|ENST00000496424.2	+	76318333,76324400,76557208	76319212,76324485,76560167	0.538462
testis_male_adult_54_years	chr3	112554238	112554288	112554268	-	RAMPAGE_only	4	4	23	0.854036	4.088779	chr3	112554199	112554626	LTR|ERV1|LTR7B	+	chr3	112532521	112561633	STRG.74713.3	-	112532521,112534268,112536474,112537734,112538145,112541802,112544056,112548532,112550218,112553279,112558375,112561456	112532780,112534337,112536602,112537890,112538180,112541884,112544106,112548614,112550262,112553329,112558417,112561633	0.869565
testis_male_adult_54_years	chr20	50131130	50131151	50131139	-	High_confidence	15	15	35	1.299620	4.680758	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.942857
testis_male_adult_54_years	chr9	107284761	107284773	107284761	+	High_confidence	3	3	13	0.482716	3.418296	chr9	107284763	107284913	SINE|MIR|MIRb	+	chr9	107284768	107332194	RAD23B|NM_001244713.1	+	107284768,107300140,107302034,107306378,107311681,107318751,107321982,107323889,107324833,107329542	107284913,107300222,107302114,107306647,107311737,107318879,107322118,107324017,107325004,107332194	0.692308
testis_male_adult_54_years	chr11	45144322	45144348	45144322	-	RAMPAGE_only	3	3	9	0.334188	2.641604	chr11	45144187	45144320	SINE|MIR|MIR3	-	chr11	45111415	45111736	STRG.234229.1	-	45111415	45111736	0.666667
testis_male_adult_54_years	chr5	23951343	23951388	23951347	+	High_confidence	12	12	71	2.636373	5.818624	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.732394
testis_male_adult_54_years	chr19	10564929	10564938	10564937	-	RAMPAGE_only	28	29	42	1.559544	4.765312	chr19	10564755	10564893	SINE|MIR|MIRb	-	chr19	10553575	10565971	KRI1|ENST00000478863.5	-	10553575,10555086,10555284,10557551,10557971,10558163,10559358,10559612,10559809,10560311,10561002,10561168,10561666,10561790,10562728,10564928,10565716,10565905	10554281,10555185,10555349,10557895,10558060,10558239,10559529,10559708,10559936,10560448,10561080,10561265,10561716,10561845,10562837,10565034,10565790,10565971	0.952381
testis_male_adult_54_years	chr13	113550540	113550550	113550549	+	RAMPAGE_only	7	7	12	0.445584	3.418296	chr13	113550457	113550814	LTR|ERVL-MaLR|MLT1A1	-	chr13	113548332	113552214	TMCO3|ENST00000619336.1	+	113548332,113549424,113550754,113551428,113552031	113548452,113549501,113550815,113551562,113552214	0.916667
testis_male_adult_54_years	chr1	178531642	178531688	178531651	+	High_confidence	13	13	34	1.262488	4.418201	chr1	178531649	178531806	DNA|hAT-Charlie|MER5A1	+	chr1	178531639	178533841	STRG.20071.1	+	178531639,178532956,178533724	178531779,178533071,178533841	0.705882
testis_male_adult_54_years	chr7	141638392	141638393	141638392	+	High_confidence	25	25	37	1.373884	4.739098	chr7	141638363	141639700	LINE|L2|L2c	-	chr7	141638167	141653911	STRG.175592.4	+	141638167,141641247,141641810,141649262,141651524,141652786	141640871,141641398,141641908,141649333,141651609,141653911	0.972973
testis_male_adult_54_years	chr2	177216301	177216302	177216301	+	High_confidence	7	8	10	0.371320	2.846439	chr2	177216294	177216398	LINE|L1|L1ME3	-	chr2	177216525	177219687	HNRNPA3|ENST00000432457.2	+	177216525,177216675,177216907,177219036,177219246,177219407	177216592,177216747,177216940,177219159,177219314,177219687	0.800000
testis_male_adult_54_years	chr14	34895053	34895089	34895088	-	High_confidence	5	6	18	0.668376	3.690117	chr14	34894826	34895089	SINE|Alu|AluSc8	+	chr14	34810941	34895145	STRG.279582.7	-	34810941,34826012,34862043,34874491,34894808	34811036,34826156,34862322,34874662,34895145	0.833333
testis_male_adult_54_years	chr5	34683828	34683840	34683828	+	High_confidence	4	4	9	0.334188	3.000000	chr5	34683732	34684026	SINE|Alu|AluY	-	chr5	34684506	34832612	RAI14|NM_001145525.1	+	34684506,34685031,34686871,34688067,34757467,34795938,34803711,34807799,34808583,34811011,34811766,34812179,34813573,34814582,34818796,34821731,34822955,34826329,34829731,34830687	34684775,34685081,34686955,34688248,34757598,34796027,34803776,34807857,34808654,34811118,34811945,34812208,34813660,34814669,34818851,34821850,34824491,34826479,34829797,34832612	0.777778
testis_male_adult_54_years	chr11	26523237	26523245	26523237	+	RAMPAGE_only	3	3	8	0.297056	2.521641	chr11	26522939	26523292	LTR|ERVL-MaLR|THE1D	-	chr11	26473901	26660820	ANO3|ENST00000531568.1	+	26473901,26508103,26516826,26525634,26531204,26534455,26537405,26541946,26547415,26553248,26559718,26598364,26598857,26599549,26624461,26634203,26635012,26639143,26641895,26643181,26647708,26656124,26656375,26660261	26474128,26508262,26516927,26525679,26531336,26534562,26537461,26542068,26547550,26553345,26559779,26598447,26598998,26599714,26624498,26634315,26635070,26639241,26642029,26643334,26647856,26656205,26656481,26660820	0.500000
testis_male_adult_54_years	chr18	1099004	1099005	1099004	+	High_confidence	86	88	100	3.713201	5.101332	chr18	1098033	1099321	LTR|ERV1|LTR12C	+	chr18	1099007	1159335	AP005328.1|ENST00000581556.1	+	1099007,1133842,1159178	1099347,1133894,1159335	0.740000
testis_male_adult_54_years	chr4	177227482	177227483	177227482	+	High_confidence	18	18	20	0.742640	4.021928	chr4	177226748	177228090	LTR|ERV1|LTR12C	-	chr4	177227454	177228668	STRG.109182.1	+	177227454,177228543	177227770,177228668	0.500000
testis_male_adult_54_years	chr3	191316527	191316544	191316533	-	High_confidence	5	5	22	0.816904	4.392317	chr3	191316223	191317555	LTR|ERV1|LTR12C	-	chr3	191268336	191316621	STRG.86521.1	-	191268336,191273385,191275251,191276806,191278071,191282086,191316035	191268441,191273564,191275345,191276844,191278170,191282313,191316621	0.863636
testis_male_adult_54_years	chr10	46286291	46286292	46286291	+	High_confidence	33	33	43	1.596676	4.660058	chr10	46286131	46286633	LTR|ERVL-MaLR|MLT1G	+	chr10	46286016	46286773	STRG.217770.1	+	46286016	46286773	0.767442
testis_male_adult_54_years	chr4	141220472	141220521	141220504	+	High_confidence	8	8	45	1.670940	4.927799	chr4	141220377	141220506	LINE|L2|L2	-	chr4	141220886	141234697	ZNF330|NM_014487.5	+	141220886,141222365,141224486,141224606,141226766,141229570,141230165,141231438,141232524,141233714	141221108,141222491,141224506,141224677,141226846,141229697,141230270,141231485,141232642,141234697	0.911111
testis_male_adult_54_years	chr3	15756536	15756551	15756546	-	High_confidence	22	43	100	3.713201	6.152569	chr3	15756542	15756684	SINE|MIR|MIRc	+	chr3	15721100	15756547	ANKRD28|ENST00000476472.5	-	15721100,15724381,15735409,15737032,15751749,15756483	15721127,15724524,15735497,15737233,15751820,15756547	0.500000
testis_male_adult_54_years	chr16	57782292	57782332	57782312	-	High_confidence	8	9	42	1.559544	5.016089	chr16	57782226	57782370	SINE|MIR|MIRc	-	chr16	57758737	57782313	KIFC3|ENST00000564136.5	-	57758737,57759727,57760281,57760725,57761041,57761314,57762139,57764142,57765458,57766873,57769594,57769807,57770526,57771197,57771542,57772222,57779360,57779876,57781838	57758909,57759836,57760416,57760955,57761171,57761536,57762270,57764247,57765640,57766985,57769725,57769955,57770700,57771437,57771686,57772288,57779450,57779951,57782313	0.833333
testis_male_adult_54_years	chr11	73785298	73785308	73785307	+	RAMPAGE_only	4	5	13	0.482716	3.392747	chr11	73785129	73785574	LINE|L2|L2c	-	chr11	73787315	73864611	MRPL48|ENST00000310614.11	+	73787315,73805026,73808312,73825707,73844806,73859906,73863171,73864295	73787992,73805079,73808350,73825796,73844976,73860009,73863261,73864611	0.692308
testis_male_adult_54_years	chr12	71667770	71667774	71667770	-	RAMPAGE_only	14	14	34	1.262488	4.663910	chr12	71667688	71668064	DNA|hAT-Blackjack|MER63B	-	chr12	71613366	71663819	STRG.255992.3	-	71613366,71614534,71614833,71615205,71619314,71619925,71620209,71623359,71624103,71626259,71627750,71628917,71629608,71630599,71630822,71631777,71631971,71632885,71633263,71634154,71634703,71635442,71636489,71636849,71638417,71642435,71644094,71644876,71647748,71656884	71613435,71614700,71614938,71615316,71619409,71620124,71620315,71623597,71624292,71626446,71627934,71629037,71629710,71630721,71630954,71631887,71632514,71633017,71633438,71634304,71634825,71635580,71636654,71637059,71638515,71642559,71644318,71645075,71647813,71663819	0.529412
testis_male_adult_54_years	chr10	101176314	101176345	101176314	+	High_confidence	6	6	22	0.816904	4.459432	chr10	101176288	101176600	SINE|Alu|AluJb	-	chr10	101176321	101194147	LINC01514|NR_120620.1	+	101176321,101176988,101181689,101191070,101191309,101193697	101176697,101177102,101181745,101191212,101191510,101194147	0.818182
testis_male_adult_54_years	chr12	81270660	81270673	81270672	+	High_confidence	3	3	7	0.259924	2.584963	chr12	81270335	81270781	LTR|ERVL-MaLR|MLT1C	+	chr12	81270674	81312311	PPFIA2-AS1|ENST00000549161.5	+	81270674,81282686,81284215,81292393,81296633,81298062,81312046	81270849,81282794,81284379,81292524,81296769,81298163,81312311	0.571429
testis_male_adult_54_years	chr1	189149762	189149763	189149762	+	High_confidence	247	248	322	11.956508	6.040427	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	189149657	189389947	STRG.21183.1	+	189149657,189150541,189307728,189380805,189389824	189149876,189150759,189307878,189380921,189389947	0.701863
testis_male_adult_54_years	chr11	113898866	113898886	113898866	+	RAMPAGE_only	4	5	8	0.297056	3.000000	chr11	113898799	113898968	LTR|ERVL-MaLR|MLT1E3	+	chr11	113904676	113946565	HTR3B|ENST00000260191.6	+	113904676,113909294,113931383,113931757,113932288,113932935,113942981,113944572,113945901	113904985,113909455,113931428,113931867,113932458,113933093,113943192,113944755,113946565	0.625000
testis_male_adult_54_years	chr16	48502239	48502252	48502239	+	High_confidence	5	5	11	0.408452	3.321928	chr16	48502162	48502246	LTR|ERVL-MaLR|MLT1K	-	chr16	48502245	48502675	STRG.306186.1	+	48502245	48502675	0.818182
testis_male_adult_54_years	chr4	151956186	151956193	151956192	+	High_confidence	3	3	7	0.259924	2.584963	chr4	151955788	151956326	LTR|ERVL-MaLR|MLT1F1	+	chr4	151956002	151967590	AC097375.3|ENST00000513759.1	+	151956002,151966995	151956254,151967590	0.857143
testis_male_adult_54_years	chr3	49468669	49468686	49468669	+	High_confidence	5	5	10	0.371320	2.725481	chr3	49468531	49468836	SINE|Alu|AluSx1	-	chr3	49468702	49535618	DAG1|NM_001177643.2	+	49468702,49510418,49530796	49469055,49510819,49535618	0.900000
testis_male_adult_54_years	chr18	50105473	50105531	50105530	-	RAMPAGE_only	3	3	14	0.519848	3.378783	chr18	50105509	50105591	LINE|L1|L1MD2	+	chr18	50036548	50097620	STRG.327225.5	-	50036548,50040142,50055267,50097243	50036994,50040314,50055378,50097620	0.571429
testis_male_adult_54_years	chr4	137193791	137193808	137193796	+	High_confidence	6	6	24	0.891168	3.684561	chr4	137193712	137193847	LTR|ERVL|LTR67B	+	chr4	137193755	137198367	LINC02510|ENST00000509798.1	+	137193755,137197205	137194169,137198367	0.916667
testis_male_adult_54_years	chr16	11290578	11290587	11290580	+	High_confidence	24	33	58	2.153657	5.020009	chr16	11290053	11291074	LINE|L2|L2a	-	chr16	11289728	11291542	STRG.303639.1	+	11289728	11291542	0.931034
testis_male_adult_54_years	chr17	28899544	28899557	28899544	-	High_confidence	8	8	20	0.742640	3.576618	chr17	28899536	28899711	LINE|L2|L2a	+	chr17	28898822	28899523	DHRS13|ENST00000581974.1	-	28898822,28899126	28898892,28899523	0.900000
testis_male_adult_54_years	chr13	79505334	79505366	79505349	+	RAMPAGE_only	12	12	81	3.007693	4.876016	chr13	79505349	79505642	SINE|Alu|AluJr	+	chr13	79481473	79554096	NDFIP2|ENST00000620924.1	+	79481473,79520809,79533322,79539681,79543557,79548327,79551016,79552515	79481524,79520975,79533456,79539775,79543682,79548394,79551122,79554096	0.839506
testis_male_adult_54_years	chr11	96387548	96387595	96387594	-	High_confidence	3	3	11	0.408452	3.121928	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	0.818182
testis_male_adult_54_years	chr21	46142462	46142487	46142465	-	High_confidence	4	6	14	0.519848	3.180833	chr21	46142201	46143045	LTR|ERV1|LTR12	-	chr21	46137238	46142669	FTCD|ENST00000494498.1	-	46137238,46138507,46138879,46142108	46137334,46138646,46138923,46142669	0.928571
testis_male_adult_54_years	chr16	25015742	25015743	25015742	-	High_confidence	4	4	7	0.259924	2.584963	chr16	25015628	25015932	SINE|Alu|AluSx1	+	chr16	24919383	25015378	ARHGAP17|NM_018054.5	-	24919383,24930783,24935469,24941986,24943770,24947481,24949403,24952288,24952930,24954602,24959670,24959910,24964196,24968350,24968660,24970506,24977214,24978965,25015208	24920260,24931404,24935639,24942143,24943862,24947595,24949484,24952370,24953042,24954730,24959752,24959979,24964308,24968427,24968772,24970580,24977319,24979005,25015378	0.571429
testis_male_adult_54_years	chr1	28691938	28691949	28691938	+	High_confidence	5	5	10	0.371320	3.321928	chr1	28691898	28692007	SINE|Alu|AluJb	+	chr1	28691941	28714873	STRG.3630.5	+	28691941,28692941,28696926,28702437,28704191,28710519,28714072	28691999,28693045,28697084,28702569,28704329,28710642,28714873	1.000000
testis_male_adult_54_years	chr17	42493732	42493746	42493732	+	RAMPAGE_only	4	4	8	0.297056	2.807355	chr17	42493514	42493826	SINE|Alu|AluJr	+	chr17	42458903	42522578	ATP6V0A1|ENST00000544137.5	+	42458903,42460847,42487346,42490486,42494333,42495033,42495625,42498923,42500706,42501196,42507519,42508571,42513860,42514288,42521026	42458963,42460864,42487367,42490637,42494473,42495188,42495716,42499042,42500923,42501304,42507627,42508589,42513978,42514460,42522578	0.875000
testis_male_adult_54_years	chr1	229901026	229901038	229901035	+	High_confidence	2	2	7	0.259924	2.807355	chr1	229901076	229901425	LINE|L1|L1ME1	+	chr1	229901100	229901512	STRG.26502.1	+	229901100	229901512	0.714286
testis_male_adult_54_years	chr3	44836933	44836971	44836945	+	RAMPAGE_only	22	40	103	3.824597	4.326532	chr3	44836672	44837164	LTR|ERV1|LOR1a	-	chr3	44821847	44853021	STRG.66893.10	+	44821847,44827458,44828213,44829948,44830895,44838274,44840354,44841073,44843124,44847984,44848520,44851786,44852207,44852672	44826460,44827528,44828300,44830075,44831018,44838421,44840456,44841238,44843234,44848057,44848558,44851952,44852339,44853021	1.000000
testis_male_adult_54_years	chr5	151158464	151158499	151158498	-	High_confidence	21	21	41	1.522412	4.650662	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.634146
testis_male_adult_54_years	chr10	9878203	9878219	9878218	-	High_confidence	3	3	7	0.259924	2.807355	chr10	9877868	9878570	LTR|ERV1|MER50B	+	chr10	9785917	9878093	STRG.213766.2	-	9785917,9787401,9790252,9877747	9786265,9787483,9790788,9878093	0.714286
testis_male_adult_54_years	chr10	100270413	100270463	100270427	-	RAMPAGE_only	3	3	21	0.779772	4.037401	chr10	100270327	100270589	DNA|hAT-Charlie|MER1B	+	chr10	100232295	100267681	CWF19L1|NM_001303405.1	-	100232295,100235666,100236849,100238021,100243697,100245798,100246794,100250247,100253420,100256261,100260217,100260965,100261978,100267525	100233371,100235764,100236969,100238231,100243777,100245913,100246935,100250332,100253539,100256476,100260319,100261044,100262063,100267681	0.571429
testis_male_adult_54_years	chr8	69448260	69448309	69448280	-	High_confidence	7	9	32	1.188224	4.625000	chr8	69448185	69448365	DNA|DNA|UCON78	-	chr8	69424869	69448244	LINC01603|NR_110433.1	-	69424869,69429975,69447586,69447817	69425721,69430048,69447698,69448244	0.937500
testis_male_adult_54_years	chr12	126736893	126736945	126736935	-	High_confidence	158	222	807	29.965533	7.164558	chr12	126736798	126737145	LTR|ERVL-MaLR|MLT1K	-	chr12	126730225	126736964	STRG.263167.1	-	126730225,126732310,126736665	126730803,126732407,126736964	0.578686
testis_male_adult_54_years	chr13	45378474	45378489	45378474	+	High_confidence	3	3	8	0.297056	3.000000	chr13	45378076	45378674	LTR|ERV1|HERVE-int	-	chr13	45378529	45390879	TPT1-AS1|ENST00000520585.5	+	45378529,45379194,45379898,45383090,45383759,45389734,45390757	45378671,45379335,45380001,45383235,45383838,45389820,45390879	0.750000
testis_male_adult_54_years	chr9	70177322	70177371	70177322	+	RAMPAGE_only	4	4	27	1.002564	3.488525	chr9	70176864	70177539	DNA|TcMar-Tigger|MER44C	-	chr9	70169641	70179832	STRG.203282.3	+	70169641,70178730	70178651,70179832	0.518519
testis_male_adult_54_years	chrY	13345411	13345412	13345411	-	RAMPAGE_only	10	10	12	0.445584	2.845351	chrY	13339638	13346814	LTR|ERV1|HERV1_I-int	+	chrY	13336895	13479923	STRG.372158.12	-	13336895,13355922,13357876,13359087,13360429,13366266,13369255,13393858,13396917,13410992,13414734,13449016,13470120,13479253,13479513	13355398,13356018,13357969,13359986,13360528,13366393,13369349,13393893,13396972,13411113,13414793,13449066,13470229,13479317,13479923	0.916667
testis_male_adult_54_years	chr17	81197750	81197772	81197771	-	High_confidence	3	5	10	0.371320	2.721928	chr17	81197733	81197781	LINE|CR1|L3	-	chr17	81189596	81197019	CEP131|ENST00000573053.5	-	81189596,81189914,81190638,81190906,81191192,81192317,81192475,81192735,81193925,81194869,81195834,81196700,81196929	81189843,81189975,81190802,81191084,81191350,81192392,81192593,81192843,81194127,81194972,81195951,81196826,81197019	1.000000
testis_male_adult_54_years	chr12	4228225	4228260	4228225	+	High_confidence	3	3	14	0.519848	3.180833	chr12	4228064	4228475	LTR|ERVL-MaLR|MSTB1	+	chr12	4228323	4228759	STRG.245851.1	+	4228323	4228759	0.642857
testis_male_adult_54_years	chr16	49738453	49738473	49738453	-	RAMPAGE_only	60	60	121	4.492973	5.438162	chr16	49738353	49738507	SINE|MIR|MIRc	+	chr16	49490604	49780609	ZNF423|ENST00000562871.5	-	49490604,49523623,49525362,49626169,49635659,49730770,49780544	49491304,49523739,49525494,49626254,49638874,49730971,49780609	0.834711
testis_male_adult_54_years	chr6	32385504	32385541	32385504	-	RAMPAGE_only	3	3	13	0.482716	3.418296	chr6	32384189	32386122	Retroposon|SVA|SVA_D	-	chr6	32292697	32371912	C6orf10|NM_006781.4	-	32292697,32299921,32300679,32302608,32322485,32323116,32323590,32330588,32332033,32335436,32335911,32336614,32338978,32339599,32349739,32355123,32355648,32366166,32366272,32367924,32368781,32369896,32371693	32294035,32299936,32300700,32302629,32322506,32323137,32323614,32330609,32332054,32335457,32335932,32336635,32338999,32339638,32349829,32355144,32355669,32366187,32366302,32367957,32368814,32369983,32371912	0.692308
testis_male_adult_54_years	chr6	20319698	20319699	20319698	+	High_confidence	20	20	21	0.779772	4.121928	chr6	20318737	20320042	LTR|ERV1|LTR12C	+	chr6	20319655	20333114	STRG.137688.1	+	20319655,20331705	20321575,20333114	0.952381
testis_male_adult_54_years	chr2	69798814	69798862	69798849	-	High_confidence	49	49	134	4.975689	6.638595	chr2	69796454	69798802	LTR|ERV1|HUERS-P3-int	-	chr2	69789544	69799032	STRG.39731.5	-	69789544	69799032	1.000000
testis_male_adult_54_years	chr2	146838131	146838157	146838131	+	High_confidence	5	5	21	0.779772	3.821928	chr2	146837807	146838292	LTR|ERVL-MaLR|MLT1H	+	chr2	146837748	146850310	LINC01911|ENST00000450667.1	+	146837748,146838039,146846628,146848248,146849144,146850255	146837811,146838205,146846818,146848411,146849313,146850310	0.904762
testis_male_adult_54_years	chr8	123412146	123412179	123412162	-	RAMPAGE_only	2	2	9	0.334188	3.000000	chr8	123411857	123412291	LTR|ERVL-MaLR|MLT1J	+	chr8	123320501	123416350	ATAD2|ENST00000521903.5	-	123320501,123322937,123325892,123328189,123333877,123334199,123336372,123337624,123339310,123344883,123346085,123346617,123347091,123348186,123349284,123356388,123357561,123359220,123359576,123361538,123369057,123369820,123370902,123371235,123371669,123372636,123380528,123400742,123416247	123321175,123323066,123326026,123328579,123334021,123334322,123336532,123337821,123339446,123345069,123346272,123346750,123347406,123348273,123349421,123356477,123357736,123359336,123359685,123361646,123369175,123370024,123370990,123371338,123371835,123372686,123380677,123401175,123416350	0.555556
testis_male_adult_54_years	chr13	95784476	95784492	95784476	+	High_confidence	15	15	58	2.153657	5.517101	chr13	95784243	95784783	LTR|ERVL|MER68	-	chr13	95784465	95794989	STRG.274341.3	+	95784465,95785938,95787006,95790872,95793384	95784709,95786071,95787155,95793363,95794989	0.965517
testis_male_adult_54_years	chr19	48232679	48232680	48232679	-	RAMPAGE_only	14	14	17	0.631244	2.977217	chr19	48232582	48232775	DNA|hAT-Charlie|MER3	-	chr19	48211896	48234464	STRG.338294.11	-	48211896,48215339,48218870,48221729,48230437,48230776,48231659	48211975,48215384,48219012,48221855,48230700,48231006,48234464	0.941176
testis_male_adult_54_years	chr13	23108128	23108150	23108128	+	High_confidence	2	2	8	0.297056	2.807355	chr13	23107658	23108181	LTR|ERV1|LTR12F	+	chr13	23107876	23108884	STRG.264984.1	+	23107876	23108884	0.625000
testis_male_adult_54_years	chr6	165576506	165576507	165576506	-	High_confidence	4	4	6	0.222792	2.584963	chr6	165576342	165576862	LINE|L2|L2	+	chr6	165333024	165576448	PDE10A|ENST00000650117.1	-	165333024,165336122,165339277,165343390,165379193,165388297,165392645,165395180,165396316,165413500,165416188,165418634,165428657,165430286,165431421,165432973,165435236,165448927,165450241,165482314,165543439,165576411	165333127,165336211,165339358,165343502,165379366,165388453,165392796,165395264,165396459,165413687,165416281,165418777,165428709,165430345,165431472,165433129,165435377,165448977,165450362,165482343,165543568,165576448	0.500000
testis_male_adult_54_years	chr13	44782744	44782789	44782763	+	High_confidence	8	8	54	2.005129	5.078045	chr13	44782686	44783503	LTR|ERV1|LTR1D1	-	chr13	44782770	44783389	STRG.267452.1	+	44782770	44783389	0.759259
testis_male_adult_54_years	chr1	40980538	40980560	40980545	+	High_confidence	3	3	14	0.519848	3.392747	chr1	40980445	40980641	SINE|MIR|MIRc	-	chr1	40979757	41004250	CTPS1|ENST00000463285.6	+	40979757,40983277,40984820,40987371,40988593,40991164,40991764,40995916,40997393,41001028,41002159,41003113,41003980	40979829,40983456,40984991,40987472,40988710,40991248,40991845,40996068,40997526,41001117,41002254,41003176,41004250	0.714286
testis_male_adult_54_years	chr4	187671831	187671836	187671831	+	High_confidence	2	2	6	0.222792	2.584963	chr4	187671192	187672742	LINE|L1|L1PB1	-	chr4	187671748	187673031	STRG.110557.1	+	187671748	187673031	0.666667
testis_male_adult_54_years	chr16	21704962	21705017	21704979	+	High_confidence	5	5	23	0.854036	4.523562	chr16	21704651	21705137	LTR|ERV1|LTR45B	-	chr16	21704968	21760726	OTOA|ENST00000563871.5	+	21704968,21709887,21714984,21716906,21719132,21722904,21726522,21727111,21728240,21730836,21736260,21740720,21744880,21747297,21748870,21751934,21752368,21753026,21757081,21760469	21705292,21710103,21715152,21717047,21719504,21722978,21726658,21727159,21728431,21730930,21736390,21740908,21745036,21748773,21748960,21752077,21752505,21753124,21757277,21760726	0.608696
testis_male_adult_54_years	chr1	40999548	40999585	40999567	+	RAMPAGE_only	12	16	39	1.448148	4.907072	chr1	40999388	40999863	LINE|L1|L1ME2	+	chr1	40979717	41012554	CTPS1|ENST00000648020.1	+	40979717,40983277,40984820,40987371,40988593,40991164,40991764,40995916,40997393,40999829,41002159,41003113,41006050,41007448,41008658,41008793,41009444,41010160,41011657	40979829,40983456,40984991,40987472,40988710,40991248,40991845,40996068,40997526,41001117,41002254,41003176,41006094,41007545,41008714,41008890,41009589,41010254,41012554	0.974359
testis_male_adult_54_years	chr20	5118469	5118525	5118504	-	RAMPAGE_only	10	10	49	1.819469	5.053286	chr20	5118300	5118545	SINE|Alu|AluJr4	+	chr20	5114952	5120001	PCNA|NM_182649.1	-	5114952,5115448,5117469,5118609,5118768,5119577	5115362,5115572,5117664,5118677,5118866,5120001	0.775510
testis_male_adult_54_years	chr1	105956715	105956716	105956715	+	High_confidence	21	22	31	1.151092	3.950344	chr1	105956478	105956938	LTR|ERVL|MER70A	+	chr1	105956715	106042738	AL355306.2|ENST00000635395.1	+	105956715,105965679,106022017,106038349,106041566,106041831	105956847,105965822,106022141,106038604,106041651,106042738	0.935484
testis_male_adult_54_years	chr16	8964511	8964524	8964523	-	High_confidence	3	3	7	0.259924	2.807355	chr16	8964500	8964791	SINE|Alu|AluJr	+	chr16	8920442	8964514	USP7|ENST00000569230.5	-	8920442,8921156,8923214,8930292,8964393	8920447,8921295,8923413,8930397,8964514	0.571429
testis_male_adult_54_years	chr17	18856169	18856206	18856196	-	High_confidence	10	10	37	1.373884	4.707715	chr17	18856136	18856308	LTR|ERVL-MaLR|MLT1K	-	chr17	18855849	18856249	STRG.314928.1	-	18855849	18856249	0.540541
testis_male_adult_54_years	chr8	76988336	76988337	76988336	-	RAMPAGE_only	6	6	9	0.334188	2.750000	chr8	76988253	76988288	DNA|hAT-Charlie|MER5A	-	chr8	76983639	76986527	PEX2|ENST00000518986.5	-	76983639,76986186,76986493	76984195,76986296,76986527	0.888889
testis_male_adult_54_years	chr19	33553103	33553142	33553141	+	High_confidence	11	13	49	1.819469	4.845176	chr19	33553112	33553300	LTR|ERVL-MaLR|MLT1K	+	chr19	33553107	33557331	STRG.335621.1	+	33553107,33555067,33556685	33553550,33556171,33557331	0.979592
testis_male_adult_54_years	chr12	70219561	70219593	70219592	-	RAMPAGE_only	7	7	14	0.519848	2.985228	chr12	70219324	70219754	LTR|ERVL-MaLR|MLT1C	-	chr12	70219131	70221862	LINC01481|ENST00000552998.1	-	70219131,70221699	70219597,70221862	0.857143
testis_male_adult_54_years	chr12	114009216	114009241	114009224	+	RAMPAGE_only	21	21	59	2.190789	5.314709	chr12	114009085	114009379	LINE|L2|L2c	-	chr12	114011528	114023125	STRG.261413.1	+	114011528,114021879	114012345,114023125	0.610169
testis_male_adult_54_years	chr13	80706639	80706680	80706663	-	High_confidence	5	5	19	0.705508	4.169925	chr13	80706437	80707039	LTR|ERV1|HERVE-int	+	chr13	80699390	80706778	STRG.272376.1	-	80699390,80704787,80706440	80704244,80704932,80706778	0.789474
testis_male_adult_54_years	chr4	5432305	5432318	5432305	+	High_confidence	8	8	25	0.928300	4.103465	chr4	5432286	5432555	LINE|L2|L2b	-	chr4	5432285	5447330	STK32B|ENST00000511959.1	+	5432285,5435703,5446672	5432370,5435933,5447330	0.680000
testis_male_adult_54_years	chr6	4724884	4724885	4724884	-	High_confidence	177	177	182	6.758026	6.523353	chr6	4724469	4725869	LTR|ERV1|LTR12C	-	chr6	4714097	4724885	AL356747.1|ENST00000643972.1	-	4714097,4718526,4724410	4714908,4718594,4724885	0.884615
testis_male_adult_54_years	chr12	59295617	59295618	59295617	+	High_confidence	116	116	158	5.866858	5.930587	chr12	59295355	59296039	LTR|ERV1|LTR12_	+	chr12	59295570	59351961	STRG.254313.1	+	59295570,59351882	59296234,59351961	0.930380
testis_male_adult_54_years	chr10	56154986	56155035	56154986	-	High_confidence	5	5	31	1.151092	4.418157	chr10	56154938	56156388	LTR|ERV1|LTR12C	+	chr10	56151217	56155481	STRG.218785.2	-	56151217,56154831	56151995,56155481	0.709677
testis_male_adult_54_years	chr12	20822557	20822571	20822570	+	RAMPAGE_only	7	7	16	0.594112	3.906891	chr12	20822186	20822617	LTR|ERV1|LTR7	-	chr12	20815673	21090245	AC011604.2|ENST00000540229.1	+	20815673,20855027,20858438,20861016,20862411,20862755,20875234,20877771,20879435,20880854,20883417,20898435,20901349,21067318,21076451,21089907	20815822,20855169,20858571,20861138,20862558,20862854,20875477,20877936,20879631,20881020,20883602,20898500,20901467,21067383,21076569,21090245	0.500000
testis_male_adult_54_years	chr11	72008093	72008094	72008093	-	High_confidence	7	8	11	0.408452	3.027169	chr11	72007942	72008176	SINE|MIR|MIR	+	chr11	72002863	72007916	NUMA1|ENST00000540626.5	-	72002863,72003886,72004224,72004639,72005232,72006034,72007188	72003538,72004099,72004341,72004816,72005369,72006263,72007916	1.000000
testis_male_adult_54_years	chr5	109794098	109794168	109794098	+	RAMPAGE_only	7	7	35	1.299620	4.629004	chr5	109794028	109794254	LINE|RTE-X|L4_C_Mam	-	chr5	109790331	109867173	STRG.124557.3	+	109790331,109819668,109820219,109823722,109842327,109845864,109847656,109855139,109865035,109866845	109817438,109819887,109820342,109830980,109842461,109846006,109847790,109855334,109865146,109867173	1.000000
testis_male_adult_54_years	chr6	76774918	76775007	76774949	+	High_confidence	91	91	378	14.035900	6.591393	chr6	76774716	76775166	LTR|ERVL|MER70A	+	chr6	76774982	76814145	STRG.144652.1	+	76774982,76775167,76809019	76775075,76808896,76814145	0.801587
testis_male_adult_54_years	chr9	33528451	33528457	33528456	+	RAMPAGE_only	5	6	9	0.334188	2.947703	chr9	33528313	33528551	SINE|MIR|MIR	-	chr9	33524412	33573003	ANKRD18B|NM_001244752.1	+	33524412,33528726,33528999,33533438,33534369,33536877,33541146,33543184,33547937,33550429,33555707,33558057,33566218,33567102,33568670,33572315	33524695,33528841,33529173,33533545,33534507,33536945,33541227,33543255,33548855,33550579,33555820,33558187,33566500,33567314,33568893,33573003	1.000000
testis_male_adult_54_years	chr19	31167479	31167513	31167501	+	High_confidence	30	30	98	3.638937	6.141602	chr19	31167341	31167512	SINE|MIR|MIR3	-	chr19	31167515	31207663	LINC01791|ENST00000589511.1	+	31167515,31167684,31195589,31204745,31207498	31167589,31167833,31195703,31204920,31207663	0.571429
testis_male_adult_54_years	chr7	123925226	123925263	123925240	+	High_confidence	7	7	27	1.002564	4.623517	chr7	123924480	123925417	LTR|ERV1|MER34-int	-	chr7	123925231	123960046	SPAM1|NM_001174044.1	+	123925231,123949871,123953364,123954996,123959483	123925531,123949983,123954524,123955086,123960046	0.703704
testis_male_adult_54_years	chr17	41871737	41871746	41871745	-	RAMPAGE_only	4	4	9	0.334188	2.947703	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.777778
testis_male_adult_54_years	chr16	2669652	2669681	2669653	-	RAMPAGE_only	6	9	26	0.965432	4.469670	chr16	2669524	2670537	LTR|ERVK|LTR13	-	chr16	2611391	2671405	STRG.301687.1	-	2611391,2616599,2618481,2618821,2622689,2633738,2634494,2638283,2638669,2642228,2650983,2660901,2669410	2615242,2616773,2618578,2618890,2622765,2633836,2634639,2638421,2638712,2642489,2660875,2663407,2671405	0.769231
testis_male_adult_54_years	chr1	192987195	192987213	192987195	-	RAMPAGE_only	8	8	23	0.854036	3.038471	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192935795	192957713	AL390957.1|ENST00000647436.1	-	192935795,192957303	192935903,192957713	0.652174
testis_male_adult_54_years	chr1	33021386	33021417	33021416	-	High_confidence	3	3	12	0.445584	3.277613	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010518	33021690	STRG.4102.5	-	33010518,33012073,33014521,33021366,33021592	33010833,33013402,33014594,33021461,33021690	0.750000
testis_male_adult_54_years	chr22	35666719	35666738	35666737	+	RAMPAGE_only	6	7	13	0.482716	3.546594	chr22	35666573	35667325	LTR|ERV1|MER4-int	+	chr22	35653687	35668375	STRG.356109.1	+	35653687,35656378,35658614	35653720,35656475,35668375	1.000000
testis_male_adult_54_years	chr10	104566930	104566972	104566953	+	High_confidence	11	11	49	1.819469	5.573894	chr10	104566745	104567101	LTR|ERVL-MaLR|MLT1A0	+	chr10	104566971	104624795	AL161646.2|ENST00000649412.1	+	104566971,104585356,104594715,104596007,104597368,104616013,104616656,104624597	104567023,104585600,104594835,104596112,104597494,104616153,104616826,104624795	0.551020
testis_male_adult_54_years	chr21	39379587	39379591	39379587	+	High_confidence	6	6	14	0.519848	3.546594	chr21	39379417	39379706	SINE|Alu|AluSc	-	chr21	39379570	39397743	WRB|ENST00000650376.1	+	39379570,39390697,39391768,39393165,39396865	39379770,39390863,39391836,39393280,39397743	0.928571
testis_male_adult_54_years	chr1	22428861	22428874	22428861	+	High_confidence	3	3	8	0.297056	3.000000	chr1	22428699	22428944	LTR|ERVL-MaLR|MLT1J	+	chr1	22428875	22506241	STRG.2689.7	+	22428875,22489879,22491399,22501491,22506048	22429014,22490645,22491533,22502441,22506241	0.875000
testis_male_adult_54_years	chr7	74686180	74686192	74686180	+	RAMPAGE_only	3	3	12	0.445584	3.277613	chr7	74686020	74686347	LTR|ERV1|MER51A	-	chr7	74658030	74717066	GTF2I|ENST00000443166.5	+	74658030,74689123,74690972,74698960,74700246,74700605,74705163,74706389,74711031,74716893	74658068,74689227,74691111,74699095,74700430,74700634,74705218,74706433,74711109,74717066	0.500000
testis_male_adult_54_years	chr14	105547838	105547892	105547891	-	High_confidence	2	2	10	0.371320	3.121928	chr14	105547655	105549512	LTR|ERV1|LTR12C	+	chr14	105545804	105548001	STRG.289800.3	-	105545804	105548001	0.900000
testis_male_adult_54_years	chr7	150039088	150039129	150039088	+	RAMPAGE_only	4	4	18	0.668376	3.947703	chr7	150039030	150039107	LTR|ERV1|HERVE-int	-	chr7	150034265	150045092	STRG.177026.5	+	150034265,150037816,150039104,150044749	150037735,150038713,150043239,150045092	1.000000
testis_male_adult_54_years	chr4	136056805	136056830	136056813	+	RAMPAGE_only	7	7	29	1.076828	4.582119	chr4	136056696	136057117	LTR|ERVL|MER70B	-	chr4	136068255	136068671	STRG.103558.1	+	136068255	136068671	0.586207
testis_male_adult_54_years	chr4	116514412	116514465	116514412	-	High_confidence	3	3	22	0.816904	4.095795	chr4	116514326	116514454	LTR|ERV1|MER50-int	-	chr4	116490106	116514403	STRG.101081.1	-	116490106,116501667,116514287	116490151,116501765,116514403	0.909091
testis_male_adult_54_years	chr13	22040971	22040975	22040971	+	High_confidence	27	32	53	1.967997	5.633210	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.660377
testis_male_adult_54_years	chr8	57212197	57212259	57212249	+	RAMPAGE_only	47	50	307	11.399527	6.576016	chr8	57211576	57212321	LTR|ERV1|MER50	-	chr8	57193619	57220236	STRG.184749.4	+	57193619,57193884,57210733,57212877,57215108,57218269,57220110	57193689,57206354,57212583,57214932,57217976,57219623,57220236	0.765472
testis_male_adult_54_years	chr13	43062226	43062230	43062229	+	RAMPAGE_only	3	4	8	0.297056	2.807355	chr13	43062071	43062490	LTR|ERVL|LTR33	-	chr13	43055086	43114080	STRG.267280.2	+	43055086,43065685,43068929,43078611,43085767,43107177	43062295,43065737,43069003,43078688,43085838,43114080	0.500000
testis_male_adult_54_years	chr14	95516080	95516120	95516107	+	High_confidence	3	3	12	0.445584	3.095795	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.916667
testis_male_adult_54_years	chr2	190281143	190281222	190281221	+	High_confidence	10	10	43	1.596676	5.154222	chr2	190281110	190282222	LTR|ERVL-MaLR|MSTB2-int	-	chr2	190281188	190282578	STRG.54298.1	+	190281188	190282578	0.837209
testis_male_adult_54_years	chr2	55268581	55268596	55268588	-	High_confidence	2	2	8	0.297056	2.521641	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	0.625000
testis_male_adult_54_years	chr4	158173060	158173073	158173060	-	High_confidence	5	5	9	0.334188	3.169925	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158124473	158173050	FAM198B|ENST00000585682.5	-	158124473,158130785,158155610,158170465,158172867	158127614,158131012,158155825,158171599,158173050	1.000000
testis_male_adult_54_years	chr5	131315977	131315994	131315993	+	RAMPAGE_only	3	3	8	0.297056	2.807355	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131264613	131394667	STRG.127341.4	+	131264613,131315975,131359208,131385542,131390992,131391828	131264734,131316144,131359547,131385644,131391108,131394667	0.750000
testis_male_adult_54_years	chr20	16731004	16731025	16731004	+	High_confidence	10	10	28	1.039696	4.593069	chr20	16730915	16731143	SINE|MIR|MIR	-	chr20	16730028	16732468	SNRPB2|ENST00000478522.1	+	16730028,16731667,16732163	16730164,16731766,16732468	0.750000
testis_male_adult_54_years	chr12	106985290	106985291	106985290	-	RAMPAGE_only	9	9	9	0.334188	3.169925	chr12	106985200	106985407	LINE|L2|L2c	+	chr12	106977548	106987126	MTERF2|ENST00000552029.1	-	106977548,106985114	106978771,106987126	0.555556
testis_male_adult_54_years	chr11	61792133	61792159	61792158	+	High_confidence	7	7	17	0.631244	3.734522	chr11	61792006	61792276	LINE|L2|L2c	-	chr11	61792133	61797232	STRG.235302.3	+	61792133,61795340	61792329,61797232	0.588235
testis_male_adult_54_years	chr5	74765366	74765427	74765378	+	High_confidence	20	20	192	7.129346	6.117899	chr5	74765248	74765602	LINE|L2|L2a	-	chr5	74765425	74776804	STRG.119498.2	+	74765425,74768930,74769213,74770630,74772312,74773867,74776603	74765479,74769118,74769364,74770810,74772421,74774060,74776804	0.984375
testis_male_adult_54_years	chr6	6762017	6762018	6762017	-	High_confidence	49	49	62	2.302185	4.991349	chr6	6761636	6763043	LTR|ERV1|LTR12C	-	chr6	6761227	6762006	STRG.135317.1	-	6761227	6762006	0.822581
testis_male_adult_54_years	chr12	63584658	63584673	63584672	-	High_confidence	9	9	38	1.411016	4.939183	chr12	63584408	63585120	DNA|TcMar-Tigger|MER44C	+	chr12	63560195	63584162	DPY19L2|ENST00000413230.6	-	63560195,63569223,63570757,63580661,63582405,63583811	63560662,63569349,63570857,63580836,63582525,63584162	0.631579
testis_male_adult_54_years	chr8	9688959	9688977	9688959	-	High_confidence	4	4	8	0.297056	3.000000	chr8	9688627	9688940	SINE|Alu|AluSx1	-	chr8	9688520	9689104	STRG.179574.1	-	9688520	9689104	0.750000
testis_male_adult_54_years	chr8	53177734	53177789	53177788	+	High_confidence	2	3	11	0.408452	3.321928	chr8	53177749	53178170	LINE|L2|L2a	-	chr8	53177586	53242683	AC009646.2|ENST00000524425.1	+	53177586,53216298,53242527	53178050,53216504,53242683	0.636364
testis_male_adult_54_years	chrX	27712603	27712612	27712603	+	RAMPAGE_only	11	11	27	1.002564	4.504706	chrX	27712578	27712841	LINE|L1|L1MEf	-	chrX	27746808	27748821	DCAF8L2|ENST00000545306.2	+	27746808	27748821	0.925926
testis_male_adult_54_years	chr2	94932933	94932947	94932946	-	RAMPAGE_only	3	3	10	0.371320	3.169925	chr2	94932542	94932909	LTR|ERV1|LOR1a	-	chr2	94886860	94938226	STRG.42129.6	-	94886860,94892507,94895937,94930018,94930785,94932932,94935315	94887096,94892778,94897129,94930173,94930860,94932991,94938226	0.600000
testis_male_adult_54_years	chr16	57696569	57696570	57696569	+	RAMPAGE_only	6	6	9	0.334188	2.750000	chr16	57696211	57696616	LTR|ERVL-MaLR|MLT1J	-	chr16	57694835	57731454	DRC7|ENST00000336825.12	+	57694835,57697912,57698849,57700144,57704875,57707459,57718346,57721666,57722712,57723001,57724614,57726067,57726831,57727298,57728389,57730930,57731164	57694852,57698152,57699024,57700270,57705034,57707678,57718475,57721739,57722841,57723130,57724835,57726283,57726942,57727409,57728584,57731070,57731454	0.888889
testis_male_adult_54_years	chr2	17729940	17729972	17729971	-	RAMPAGE_only	11	12	45	1.670940	4.706718	chr2	17729819	17729937	DNA|hAT-Charlie|MER3	-	chr2	17716749	17746412	SMC6|ENST00000381272.5	-	17716749,17717087,17718076,17720939,17721141,17725256,17726388,17731077,17731740,17738220,17741611,17745826	17716905,17717176,17718223,17721038,17721261,17725358,17726469,17731139,17731877,17738326,17741729,17746412	0.888889
testis_male_adult_54_years	chr1	113759894	113759899	113759894	-	High_confidence	5	6	16	0.594112	3.875000	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.562500
testis_male_adult_54_years	chr6	11934029	11934030	11934029	+	High_confidence	213	214	226	8.391835	5.644435	chr6	11932842	11934427	LTR|ERV1|LTR12C	+	chr6	11934025	11939820	STRG.136193.2	+	11934025,11938390	11935474,11939820	0.951327
testis_male_adult_54_years	chr3	128991900	128991928	128991927	-	High_confidence	2	2	7	0.259924	2.807355	chr3	128991871	128992128	LTR|ERVL-MaLR|MLT1H	+	chr3	128970979	128991897	KIAA1257|ENST00000515659.1	-	128970979,128975778,128976978,128978044,128987615,128988727,128991478	128971433,128975903,128977066,128978185,128987829,128988918,128991897	1.000000
testis_male_adult_54_years	chr7	112441632	112441667	112441632	-	High_confidence	17	17	35	1.299620	4.594672	chr7	112441453	112441741	LTR|ERVL-MaLR|MLT1O	-	chr7	112433244	112442488	STRG.171362.1	-	112433244,112441517,112442304	112433460,112441713,112442488	0.771429
testis_male_adult_54_years	chr2	230961303	230961309	230961303	-	High_confidence	10	11	21	0.779772	3.517816	chr2	230961270	230961508	LTR|ERVL-MaLR|MLT1C	-	chr2	230909865	230961066	GPR55|ENST00000392039.2	-	230909865,230960774	230911096,230961066	0.761905
testis_male_adult_54_years	chr1	147173173	147173242	147173173	+	High_confidence	8	8	56	2.079393	5.495628	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.839286
testis_male_adult_54_years	chr2	27001979	27001996	27001995	+	RAMPAGE_only	4	4	13	0.482716	3.392747	chr2	27001875	27002037	LTR|ERVL-MaLR|MLT1J	-	chr2	26970636	27022619	MAPRE3|ENST00000494788.1	+	26970636,27022211	26970802,27022619	0.615385
testis_male_adult_54_years	chr7	150041299	150041338	150041337	+	High_confidence	13	13	31	1.151092	4.573557	chr7	150040867	150041464	LTR|ERV1|HERVE-int	-	chr7	150041362	150045092	AC092666.1|ENST00000493400.1	+	150041362,150044749	150041461,150045092	0.612903
testis_male_adult_54_years	chr6	105028179	105028206	105028179	+	High_confidence	35	35	97	3.601805	6.087312	chr6	105028172	105030006	LINE|L2|L2	-	chr6	105028233	105083318	STRG.148659.2	+	105028233,105078413	105028844,105083318	0.927835
testis_male_adult_54_years	chr6	26355617	26355636	26355635	+	High_confidence	13	13	31	1.151092	4.502583	chr6	26355166	26355700	LTR|ERVL|MER70A	-	chr6	26355289	26355967	STRG.138747.1	+	26355289	26355967	0.741935
testis_male_adult_54_years	chr2	8421614	8421654	8421614	-	RAMPAGE_only	3	3	13	0.482716	3.546594	chr2	8421530	8421756	LTR|Gypsy?|LTR88b	+	chr2	8390824	8488075	STRG.30284.7	-	8390824,8391952,8392705,8441353,8488001	8391811,8392085,8392968,8441578,8488075	0.538462
testis_male_adult_54_years	chr13	65866053	65866088	65866065	+	High_confidence	31	31	202	7.500666	6.722805	chr13	65865994	65866261	LTR|ERVL|ERV3-16A3_I-int	+	chr13	65866046	65878219	LINC01052|NR_132362.1	+	65866046,65875706,65877856	65866243,65875769,65878219	0.524752
testis_male_adult_54_years	chr20	13152151	13152152	13152151	+	RAMPAGE_only	7	8	9	0.334188	2.750000	chr20	13152085	13152328	SINE|MIR|MIR	+	chr20	13008993	13169103	SPTLC3|ENST00000399002.6	+	13008993,13048944,13072255,13074348,13091082,13093483,13110111,13117505,13126590,13154002,13160002,13164753	13009384,13049130,13072410,13074497,13091207,13093577,13110217,13117725,13126717,13154138,13160132,13169103	0.888889
testis_male_adult_54_years	chr12	106985321	106985329	106985321	-	RAMPAGE_only	6	6	10	0.371320	2.947703	chr12	106985200	106985407	LINE|L2|L2c	+	chr12	106977548	106987126	MTERF2|ENST00000552029.1	-	106977548,106985114	106978771,106987126	0.600000
testis_male_adult_54_years	chr8	31497466	31497467	31497466	+	RAMPAGE_only	8	10	12	0.445584	3.277613	chr8	31497170	31497771	LTR|ERVL|LTR50	+	chr8	31535183	31536075	STRG.182143.2	+	31535183	31536075	0.500000
testis_male_adult_54_years	chr7	35624129	35624144	35624138	-	RAMPAGE_only	12	12	36	1.336752	5.014997	chr7	35623863	35624195	LINE|L1|L1MC4a	-	chr7	35612853	35622384	STRG.162038.4	-	35612853,35615477,35621108	35615382,35615602,35622384	0.777778
testis_male_adult_54_years	chr21	35886227	35886233	35886232	-	RAMPAGE_only	2	2	7	0.259924	2.584963	chr21	35886194	35886255	SINE|MIR|MIR3	+	chr21	35064605	35887915	STRG.351362.8	-	35064605,35461960,35580659,35864284,35886209	35065072,35462025,35580929,35864467,35887915	0.714286
testis_male_adult_54_years	chr9	33068823	33068842	33068841	-	RAMPAGE_only	6	7	14	0.519848	3.392747	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.928571
testis_male_adult_54_years	chr4	86021990	86022060	86022003	-	RAMPAGE_only	8	8	39	1.448148	4.626621	chr4	86020510	86022172	LTR|ERV1|LTR12C	-	chr4	86016533	86031972	MAPK10|ENST00000641130.1	-	86016533,86029196,86031367	86017370,86029274,86031972	0.923077
testis_male_adult_54_years	chr13	45379032	45379033	45379032	-	High_confidence	7	7	9	0.334188	2.750000	chr13	45378752	45379338	LTR|ERV1|HERVE-int	-	chr13	45377510	45378818	STRG.267552.3	-	45377510	45378818	0.777778
testis_male_adult_54_years	chr15	36252297	36252312	36252307	-	High_confidence	3	3	10	0.371320	3.121928	chr15	36252074	36252450	LTR|ERVL-MaLR|THE1C	-	chr15	35945818	36252257	AC021351.1|ENST00000650498.1	-	35945818,35965027,35974710,36033192,36215691,36252191	35946143,35965071,35974769,36033255,36215761,36252257	0.600000
testis_male_adult_54_years	chrX	93677913	93677914	93677913	+	RAMPAGE_only	7	7	8	0.297056	2.807355	chrX	93677499	93678375	LINE|L1|L1ME1	-	chrX	93704444	93712265	STRG.366076.6	+	93704444,93709316	93708274,93712265	0.500000
testis_male_adult_54_years	chr15	41728087	41728114	41728097	+	RAMPAGE_only	5	6	17	0.631244	3.969816	chr15	41728047	41728349	SINE|Alu|AluSx	+	chr15	41668894	41769941	MGA|ENST00000570161.5	+	41668894,41696074,41698862,41699063,41707727,41708103,41710690,41713150,41727179,41729163,41734521,41736180,41740052,41742545,41748636,41749110,41754436,41757787,41760322,41761738,41762128,41764885,41766003	41669958,41697023,41698941,41699159,41707859,41708208,41711349,41713496,41727406,41729349,41734594,41736698,41740203,41743172,41748927,41750615,41754567,41757839,41760529,41761850,41762362,41765062,41769941	0.823529
testis_male_adult_54_years	chr1	180471711	180471712	180471711	-	RAMPAGE_only	7	8	10	0.371320	3.169925	chr1	180471444	180471794	LTR|ERVL-MaLR|THE1A	-	chr1	180288216	180502887	ACBD6|NM_032360.3	-	180288216,180314691,180397515,180413365,180430179,180492268,180495460,180502044	180288517,180314722,180397605,180413471,180430262,180492365,180495525,180502887	0.500000
testis_male_adult_54_years	chr4	93203844	93203923	93203872	+	High_confidence	63	68	343	12.736280	7.110665	chr4	93203798	93204057	LTR|ERVL-MaLR|MLT1J2	-	chr4	93203948	93284614	STRG.98732.4	+	93203948,93207403,93216737,93221239,93224613,93238370,93258895,93282376	93204086,93207457,93216911,93221385,93224775,93238490,93258943,93284614	0.892128
testis_male_adult_54_years	chr12	31117685	31117703	31117685	-	High_confidence	9	12	29	1.076828	4.182006	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.827586
testis_male_adult_54_years	chr3	184247710	184247730	184247710	-	RAMPAGE_only	3	3	8	0.297056	3.000000	chr3	184247597	184247844	LINE|L2|L2c	+	chr3	184242573	184248929	STRG.85619.3	-	184242573,184242812,184243553,184243790,184244600,184245197,184245467,184245712,184248781	184242676,184242957,184243630,184243996,184244721,184245358,184245615,184245812,184248929	0.875000
testis_male_adult_54_years	chr10	9877871	9877890	9877871	-	High_confidence	5	5	10	0.371320	3.121928	chr10	9877497	9877868	DNA|TcMar-Tigger|MER6A	-	chr10	9758782	9878060	AL358214.1|ENST00000647601.1	-	9758782,9790673,9877747	9758967,9790788,9878060	0.600000
testis_male_adult_54_years	chr20	10909253	10909272	10909271	-	High_confidence	8	8	21	0.779772	3.892407	chr20	10909001	10909373	LTR|ERVL-MaLR|MLT1J2	+	chr20	10875332	10909272	LOC101929413|NR_109866.1	-	10875332,10878323,10893964,10894615,10896014,10897105,10908965	10876230,10878373,10894020,10894862,10896400,10897167,10909272	0.619048
testis_male_adult_54_years	chr6	129552586	129552597	129552586	-	High_confidence	29	29	91	3.379013	5.376979	chr6	129552160	129552906	LINE|L2|L2a	+	chr6	129526625	129552587	AL356124.1|ENST00000430296.5	-	129526625,129528664,129532915,129539175,129540446,129546394,129552541	129526785,129528738,129532969,129539375,129540542,129546492,129552587	0.736264
testis_male_adult_54_years	chr8	57203089	57203190	57203133	+	RAMPAGE_only	21	22	111	4.121653	5.547769	chr8	57202512	57203371	LTR|ERV1|MER50-int	-	chr8	57193619	57220236	STRG.184749.3	+	57193619,57193884,57208831,57210675,57212877,57215108,57218269,57220110	57193689,57208668,57208928,57212583,57214932,57217976,57219623,57220236	1.000000
testis_male_adult_54_years	chr8	38282346	38282348	38282347	-	RAMPAGE_only	5	7	10	0.371320	2.947703	chr8	38281980	38282388	LINE|L1|L1MD2	-	chr8	38275489	38280210	NSD3|ENST00000528828.1	-	38275489,38276295,38278305,38279539	38275882,38276500,38278412,38280210	0.700000
testis_male_adult_54_years	chr20	47987029	47987080	47987079	+	High_confidence	8	8	29	1.076828	4.310443	chr20	47987024	47987138	LTR|ERVL|LTR47A2	-	chr20	47987060	48019107	STRG.345770.1	+	47987060,48010607,48010946,48018862	47987124,48010841,48011381,48019107	0.724138
testis_male_adult_54_years	chr14	28830242	28830264	28830242	+	High_confidence	17	19	89	3.304749	5.753221	chr14	28830132	28830430	SINE|Alu|AluY	-	chr14	28830243	28842337	LINC02327|ENST00000550827.5	+	28830243,28832005,28837252,28841952	28830502,28832060,28837330,28842337	0.516854
testis_male_adult_54_years	chr4	141616085	141616086	141616085	+	High_confidence	383	389	520	19.308646	5.881720	chr4	141615335	141616610	LTR|ERV1|LTR12D	+	chr4	141616074	141616690	STRG.104518.1	+	141616074	141616690	0.961538
testis_male_adult_54_years	chr8	42716533	42716535	42716534	-	High_confidence	13	21	25	0.928300	4.213661	chr8	42716410	42716812	LTR|ERV1|MER66B	-	chr8	42715385	42716655	STRG.183484.1	-	42715385	42716655	0.960000
testis_male_adult_54_years	chr1	192987371	192987378	192987377	-	RAMPAGE_only	4	4	10	0.371320	3.169925	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192956796	192957689	STRG.21940.1	-	192956796	192957689	0.500000
testis_male_adult_54_years	chr4	145153342	145153346	145153342	-	RAMPAGE_only	9	9	21	0.779772	3.916127	chr4	145153264	145153525	SINE|MIR|MIRb	+	chr4	145146093	145150895	OTUD4|ENST00000509517.1	-	145146093,145150512,145150801	145146429,145150699,145150895	0.666667
testis_male_adult_54_years	chr7	29334458	29334505	29334504	+	RAMPAGE_only	6	6	18	0.668376	3.852169	chr7	29334496	29334783	SINE|Alu|AluJo	+	chr7	29288880	29400781	CHN2|ENST00000409922.5	+	29288880,29354624,29367931,29393678,29398372,29400542	29289140,29354663,29367987,29393710,29398486,29400781	0.555556
testis_male_adult_54_years	chrX	147271391	147271418	147271391	-	RAMPAGE_only	17	22	33	1.225356	4.801970	chrX	147270251	147271565	LTR|ERVK|HERVK22-int	+	chrX	147259702	147334586	STRG.370678.1	-	147259702,147279686,147280976,147283674,147285083,147286373,147290100,147317831,147332093	147271800,147279731,147282429,147283780,147285128,147286479,147298355,147329084,147334586	1.000000
testis_male_adult_54_years	chr1	109461536	109461559	109461536	-	RAMPAGE_only	14	15	36	1.336752	4.461320	chr1	109461166	109461768	LTR|ERV1|LTR12_	-	chr1	109457382	109462802	STRG.14272.1	-	109457382	109462802	1.000000
testis_male_adult_54_years	chr12	4628208	4628242	4628240	-	RAMPAGE_only	5	7	20	0.742640	3.787144	chr12	4628177	4628245	LINE|RTE-BovB|MamRTE1	-	chr12	4615507	4649047	AKAP3|NM_006422.3	-	4615507,4626495,4638100,4641898,4645054,4648766	4615894,4628805,4638196,4642004,4645192,4649047	0.950000
testis_male_adult_54_years	chr7	48584401	48584413	48584401	+	RAMPAGE_only	2	2	11	0.408452	3.121928	chr7	48584321	48584898	DNA|TcMar-Tigger|MER6A	+	chr7	48455062	48647496	ABCA13|ENST00000411975.5	+	48455062,48471529,48481035,48483075,48489235,48506335,48507871,48511083,48516724,48520040,48524247,48528235,48580223,48587153,48594709,48615284,48643287,48644616,48645416	48455286,48471599,48481154,48483163,48489344,48506390,48508049,48511199,48516881,48520294,48524440,48528345,48580374,48587288,48594813,48615377,48643393,48644754,48647496	0.818182
testis_male_adult_54_years	chr8	86424471	86424503	86424471	+	RAMPAGE_only	2	2	15	0.556980	3.456565	chr8	86423243	86424858	Retroposon|SVA|SVA_C	-	chr8	86423224	86424814	STRG.188845.8	+	86423224,86423980	86423940,86424814	0.933333
testis_male_adult_54_years	chrX	35890883	35890910	35890901	+	High_confidence	31	31	54	2.005129	4.583998	chrX	35890725	35891088	LTR|ERVL|LTR41	+	chrX	35890886	36067154	STRG.361650.1	+	35890886,35926016,35941282,35948313,35951130,35951802,35953591,35955960,35966564,35967618,35970767,35971585,35971868,35975146,35975671,35989318,35991820,35993189,35997311,36000282,36001612,36014773,36031252,36035694,36038983,36046853,36065642,36066865	35891015,35926168,35941398,35948452,35951359,35951963,35953719,35956196,35966754,35967832,35970923,35971772,35971965,35975363,35975913,35989449,35991943,35993321,35997389,36000427,36001707,36014912,36031347,36035854,36039179,36047063,36065743,36067154	0.777778
testis_male_adult_54_years	chr5	9265489	9265538	9265489	-	High_confidence	4	5	22	0.816904	4.011365	chr5	9265168	9265679	LTR|ERVL|LTR53	+	chr5	9202123	9265545	SEMA5A|ENST00000514923.4	-	9202123,9224673,9226868,9237827,9265433	9202240,9224887,9226967,9237890,9265545	0.772727
testis_male_adult_54_years	chr12	883791	883830	883829	+	RAMPAGE_only	15	17	43	1.596676	4.594301	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	752922	911451	WNK1|ENST00000530271.6	+	752922,813641,827041,830002,857160,859244,861012,862082,867865,871264,878211,879572,880720,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,901560,904452,907846,908474	754324,813814,827262,830160,857249,859464,861343,862270,869104,871348,878361,880031,880999,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,901632,904494,908034,911451	1.000000
testis_male_adult_54_years	chr5	35760250	35760304	35760303	+	RAMPAGE_only	8	11	20	0.742640	3.576618	chr5	35760080	35760377	SINE|Alu|AluY	+	chr5	35739763	35779443	STRG.116267.10	+	35739763,35753623,35759567,35763521,35771608,35773892,35776256,35779116	35740267,35753761,35759719,35763702,35771756,35774021,35776395,35779443	0.950000
testis_male_adult_54_years	chr3	5256755	5256765	5256764	-	High_confidence	4	4	8	0.297056	2.500000	chr3	5256703	5257011	LTR|ERVL-MaLR|MLT1B	+	chr3	5255534	5256761	AC026202.1|ENST00000443087.1	-	5255534,5256457	5255815,5256761	0.750000
testis_male_adult_54_years	chr7	74180648	74180663	74180662	+	RAMPAGE_only	5	5	9	0.334188	2.947703	chr7	74180599	74180847	LINE|CR1|L3	+	chr7	74183821	74197096	STRG.168134.2	+	74183821,74187610,74189672,74189821,74190246,74194740,74195168	74183921,74187798,74189737,74189918,74190306,74194878,74197096	0.888889
testis_male_adult_54_years	chr10	30369332	30369343	30369342	-	RAMPAGE_only	5	5	15	0.556980	3.773557	chr10	30369249	30369301	SINE|MIR|MIRc	-	chr10	30364326	30371907	GOLGA2P6|NR_120609.1	-	30364326,30364705,30365148,30365344,30365826,30366350,30367765,30368145,30369045,30369326,30369532,30371064	30364619,30365067,30365251,30365565,30365920,30366426,30367878,30368650,30369133,30369425,30369619,30371907	1.000000
testis_male_adult_54_years	chr22	50207746	50207761	50207760	+	RAMPAGE_only	15	15	36	1.336752	4.947703	chr22	50207678	50207775	DNA|hAT-Charlie|MER20	-	chr22	50206441	50217616	SELENOO|ENST00000492092.1	+	50206441,50208487,50210180,50210630,50215716,50216690,50216971,50217204	50206520,50208716,50210311,50210911,50215867,50216876,50217128,50217616	0.583333
testis_male_adult_54_years	chr1	154671592	154671593	154671592	+	High_confidence	9	9	11	0.408452	3.459432	chr1	154670567	154671998	LTR|ERV1|LTR12C	+	chr1	154671778	154672009	STRG.17244.1	+	154671778	154672009	0.818182
testis_male_adult_54_years	chr17	52862099	52862102	52862101	+	High_confidence	233	278	388	14.407220	6.644044	chr17	52861817	52862431	LTR|ERV1|LTR12_	+	chr17	52862120	52931384	STRG.319588.1	+	52862120,52917867,52925032,52926804	52862471,52917938,52925183,52931384	0.791237
testis_male_adult_54_years	chr18	55664874	55664903	55664902	-	High_confidence	6	6	15	0.556980	3.807355	chr18	55664708	55665164	LTR|ERV1|LTR12C	+	chr18	55269923	55664787	TCF4|ENST00000568169.5	-	55269923,55275618,55279550,55350358,55350873,55403453,55461018,55464075,55585279,55664674	55269963,55275752,55279656,55350408,55351003,55403518,55461115,55464137,55585352,55664787	0.666667
testis_male_adult_54_years	chr12	113374556	113374572	113374556	+	RAMPAGE_only	4	4	9	0.334188	2.947703	chr12	113374588	113374752	SINE|MIR|MIR3	+	chr12	113358569	113391625	PLBD2|ENST00000280800.4	+	113358569,113369115,113372648,113374473,113374792,113380744,113384104,113384850,113385211,113386936,113387743,113388458	113358890,113369209,113372807,113374574,113375007,113380842,113384265,113384946,113385283,113387089,113387906,113391625	1.000000
testis_male_adult_54_years	chr12	81251216	81251235	81251234	+	High_confidence	3	3	10	0.371320	3.121928	chr12	81251109	81251546	LINE|L1|L1MC1	+	chr12	81251047	81255466	STRG.257192.7	+	81251047,81253306,81253494,81254856	81251262,81253406,81253670,81255466	0.600000
testis_male_adult_54_years	chr9	11834969	11834990	11834969	-	High_confidence	187	238	444	16.486613	5.736843	chr9	11834918	11835506	LTR|ERV1|LTR77	+	chr9	11828972	11834953	STRG.197557.1	-	11828972,11834673	11829360,11834953	0.909910
testis_male_adult_54_years	chr7	72412211	72412223	72412211	-	High_confidence	2	2	6	0.222792	2.584963	chr7	72412058	72412621	LTR|ERV1|LTR12_	-	chr7	72022959	72412373	STRG.167865.5	-	72022959,72106150,72278685,72326319,72412057	72023769,72106294,72278810,72326393,72412373	0.666667
testis_male_adult_54_years	chr22	24256715	24256732	24256715	+	High_confidence	11	11	22	0.816904	4.221928	chr22	24256728	24256802	LINE|L1|L1M3e	+	chr22	24256633	24261900	POM121L9P|ENST00000419222.1	+	24256633,24258766,24260907,24261692	24256959,24258873,24261036,24261900	0.590909
testis_male_adult_54_years	chr16	76309851	76309882	76309864	+	High_confidence	9	10	46	1.708073	5.202804	chr16	76309640	76309982	LTR|ERVL-MaLR|THE1A	+	chr16	76309852	76495198	CNTNAP4|ENST00000471618.5	+	76309852,76316412,76355317,76427451,76448011,76448766,76449714,76452507,76461955,76467351,76475938,76479418,76489685,76494909	76309906,76316523,76355511,76427599,76448215,76448951,76449858,76452769,76462105,76467523,76476045,76479538,76489883,76495198	0.717391
testis_male_adult_54_years	chr12	109881399	109881429	109881399	-	High_confidence	12	12	48	1.782337	4.970176	chr12	109881109	109881661	LTR|ERV1|MER51B	+	chr12	109852664	109881405	STRG.261202.3	-	109852664,109855618,109857525,109858682,109880271,109881360	109852737,109855769,109857659,109858741,109881007,109881405	0.854167
testis_male_adult_54_years	chr16	58421322	58421323	58421322	+	High_confidence	14	14	14	0.519848	3.807355	chr16	58421130	58421503	LTR|ERVL-MaLR|THE1C	+	chr16	58421325	58436169	LINC02137|ENST00000562322.1	+	58421325,58435691	58421385,58436169	0.785714
testis_male_adult_54_years	chr8	98636172	98636180	98636172	-	RAMPAGE_only	3	4	7	0.259924	2.521641	chr8	98636130	98636276	SINE|MIR|MIR	-	chr8	98622938	98825646	STRG.190726.4	-	98622938,98638459,98706466,98707146,98721073,98722742,98749275,98767242,98774738,98825514	98636193,98638560,98706634,98707311,98721163,98722969,98749390,98767371,98774819,98825646	0.571429
testis_male_adult_54_years	chr12	31959187	31959194	31959187	+	High_confidence	2	3	6	0.222792	2.584963	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959369	31992834	KIAA1551|ENST00000541981.5	+	31959369,31960776,31992377	31959491,31960871,31992834	0.833333
testis_male_adult_54_years	chr2	25830887	25830893	25830887	-	High_confidence	7	7	22	0.816904	4.392317	chr2	25830642	25831037	LINE|L1|L1MD2	+	chr2	25768761	25830891	ASXL2|ENST00000497092.1	-	25768761,25771439,25799384,25806228,25830810	25768868,25771540,25799535,25806337,25830891	0.727273
testis_male_adult_54_years	chr13	84085821	84085822	84085821	-	High_confidence	61	61	63	2.339317	4.829778	chr13	84085604	84086932	LTR|ERV1|LTR12C	-	chr13	84084862	84086000	STRG.272695.1	-	84084862	84086000	0.952381
testis_male_adult_54_years	chr3	48924794	48924814	48924813	+	High_confidence	3	3	7	0.259924	2.584963	chr3	48924715	48924993	SINE|Alu|AluSc8	-	chr3	48924715	48945181	ARIH2|ENST00000463204.5	+	48924715,48927461,48945135	48924839,48927813,48945181	0.714286
testis_male_adult_54_years	chr3	191363499	191363519	191363504	+	RAMPAGE_only	3	3	10	0.371320	3.169925	chr3	191363339	191363547	SINE|MIR|MIRb	+	chr3	191329374	191398670	STRG.86530.2	+	191329374,191357087,191357997,191361068,191369918,191380158,191380686,191380827,191382745,191389495,191391740,191395915	191329723,191357150,191358124,191361159,191370036,191380274,191380731,191380932,191382825,191389602,191391897,191398670	0.500000
testis_male_adult_54_years	chr18	14509581	14509640	14509581	-	RAMPAGE_only	5	5	24	0.891168	4.152391	chr18	14507336	14509789	LINE|L1|L1PA13	-	chr18	14507338	14523610	STRG.324761.8	-	14507338,14513661,14522253	14511993,14513785,14523610	0.916667
testis_male_adult_54_years	chr1	23109591	23109593	23109592	-	RAMPAGE_only	4	7	8	0.297056	2.807355	chr1	23109483	23109838	DNA|TcMar-Tigger|Tigger4b	+	chr1	23094154	23133679	LUZP1|ENST00000475164.2	-	23094154,23109021,23109584,23133464	23094380,23109127,23109650,23133679	0.625000
testis_male_adult_54_years	chr6	143562008	143562019	143562018	-	High_confidence	375	379	577	21.425170	7.021296	chr6	143561925	143562175	LINE|L2|L2c	+	chr6	143554496	143562031	STRG.153740.2	-	143554496,143557998,143561166	143555230,143558131,143562031	0.928943
testis_male_adult_54_years	chr9	97468385	97468411	97468394	+	RAMPAGE_only	12	12	30	1.113960	4.593069	chr9	97467701	97468405	LINE|L2|L2a	-	chr9	97412075	97496125	STRG.207265.1	+	97412075,97428459,97430932,97432024,97435389,97439244,97441657,97460177,97464841,97470557,97472292,97473491,97475382,97478438,97480827,97482848,97487171,97495662	97412840,97428672,97431074,97432238,97435620,97439318,97441875,97460764,97465028,97470669,97472495,97473626,97475469,97478573,97480938,97483351,97487332,97496125	0.833333
testis_male_adult_54_years	chr22	26512099	26512111	26512099	-	High_confidence	4	6	10	0.371320	2.947703	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	0.900000
testis_male_adult_54_years	chr9	72521648	72521687	72521686	+	High_confidence	4	4	16	0.594112	3.323231	chr9	72521483	72521764	SINE|Alu|AluSx	+	chr9	72521800	72836351	TMC1|ENST00000297784.9	+	72521800,72577901,72616367,72627920,72648596,72688708,72694542,72700517,72740118,72742443,72751849,72754785,72772412,72788338,72789122,72791885,72792190,72805381,72816142,72820841,72826868,72830450,72830630,72835950	72521913,72578023,72616477,72628063,72648664,72688756,72694714,72700643,72740209,72742525,72751956,72754884,72772555,72788483,72789317,72792065,72792352,72805510,72816210,72821081,72826994,72830529,72830682,72836351	0.875000
testis_male_adult_54_years	chr7	107580442	107580476	107580458	+	High_confidence	113	114	556	20.645398	7.019298	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.832734
testis_male_adult_54_years	chr9	95681244	95681245	95681244	+	High_confidence	30	30	30	1.113960	4.281728	chr9	95680147	95681529	LTR|ERV1|LTR12C	+	chr9	95681380	95681713	STRG.206819.1	+	95681380	95681713	0.766667
testis_male_adult_54_years	chr7	9961073	9961084	9961073	+	High_confidence	6	6	13	0.482716	3.334679	chr7	9961015	9961170	SINE|MIR|MIR3	+	chr7	9961023	9981817	AC004936.1|ENST00000451755.1	+	9961023,9961284,9981737	9961165,9961423,9981817	0.538462
testis_male_adult_54_years	chr5	165241718	165241756	165241751	-	High_confidence	41	41	144	5.347010	6.369905	chr5	165241000	165242560	LTR|ERVL|ERVL-B4-int	-	chr5	165220576	165241752	LINC01938|ENST00000521341.1	-	165220576,165240461,165241628	165222020,165240757,165241752	0.618056
testis_male_adult_54_years	chr18	58590966	58591003	58590982	-	RAMPAGE_only	7	8	27	1.002564	3.448884	chr18	58590847	58591208	LTR|ERVL|LTR33A_	+	chr18	58577958	58581606	STRG.328318.3	-	58577958,58578813,58581447	58578028,58580548,58581606	0.925926
testis_male_adult_54_years	chr11	70341963	70341964	70341963	+	High_confidence	7	7	11	0.408452	3.095795	chr11	70341355	70342292	LINE|L2|L2	-	chr11	70341872	70348261	PPFIA1|ENST00000528284.1	+	70341872,70343668,70348188	70342143,70343892,70348261	0.545455
testis_male_adult_54_years	chr1	179312625	179312663	179312625	+	RAMPAGE_only	23	29	63	2.339317	5.592127	chr1	179312548	179312870	LTR|ERVL|LTR33	+	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	0.841270
testis_male_adult_54_years	chr3	15754306	15754331	15754306	-	RAMPAGE_only	2	2	8	0.297056	2.521641	chr3	15754093	15754585	DNA|TcMar-Tigger|Tigger7	+	chr3	15721100	15756547	ANKRD28|ENST00000476472.5	-	15721100,15724381,15735409,15737032,15751749,15756483	15721127,15724524,15735497,15737233,15751820,15756547	0.750000
testis_male_adult_54_years	chr5	80407084	80407085	80407084	+	High_confidence	11	11	12	0.445584	3.459432	chr5	80406956	80407268	SINE|Alu|AluJr	-	chr5	80408012	80440376	ZFYVE16|NM_001284237.1	+	80408012,80434108,80436755,80439935	80408153,80434217,80439007,80440376	0.583333
testis_male_adult_54_years	chr3	197916379	197916392	197916379	-	High_confidence	193	193	302	11.213867	6.834798	chr3	197916298	197916573	SINE|Alu|AluJb	-	chr3	197889412	197916420	STRG.87439.4	-	197889412,197891445,197892627,197912674,197913880,197916171	197889714,197891547,197892759,197912749,197914042,197916420	0.715232
testis_male_adult_54_years	chr7	153412970	153412997	153412996	+	High_confidence	4	4	10	0.371320	2.947703	chr7	153409397	153413807	LTR|ERV1|HERV-Fc1-int	-	chr7	153413118	153422494	STRG.177299.1	+	153413118,153422243	153413850,153422494	0.900000
testis_male_adult_54_years	chr16	15464620	15464621	15464620	-	High_confidence	7	7	8	0.297056	2.521641	chr16	15464457	15464983	LTR|ERV1|MER41B	-	chr16	15464061	15464604	STRG.304083.2	-	15464061	15464604	0.625000
testis_male_adult_54_years	chr18	48750083	48750145	48750083	+	RAMPAGE_only	6	6	21	0.779772	4.037401	chr18	48750066	48750324	SINE|MIR|MIRc	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	0.523810
testis_male_adult_54_years	chr3	116921439	116921445	116921439	+	High_confidence	330	351	540	20.051286	7.135367	chr3	116921325	116921598	DNA|DNA|UCON78	+	chr3	116921430	116932238	LINC00901|NR_121607.1	+	116921430,116930916	116921560,116932238	0.894444
testis_male_adult_54_years	chr7	44829348	44829349	44829348	-	RAMPAGE_only	11	12	17	0.631244	3.750000	chr7	44829318	44829620	SINE|Alu|AluSq2	+	chr7	44826790	44848077	H2AFV|ENST00000222690.10	-	44826790,44835528,44840898,44843276,44847968	44830163,44835658,44841012,44843354,44848077	0.941176
testis_male_adult_54_years	chr4	74883327	74883348	74883344	+	High_confidence	48	49	98	3.638937	6.293182	chr4	74883138	74883696	LINE|L2|L2b	-	chr4	74883306	74888822	STRG.96239.2	+	74883306,74886436	74883518,74888822	0.755102
testis_male_adult_54_years	chr8	47941425	47941511	47941484	+	High_confidence	30	30	210	7.797722	6.043730	chr8	47941311	47941694	LTR|ERVL|MER77B	+	chr8	47941438	47944303	STRG.183923.2	+	47941438,47942229	47941686,47944303	0.933333
testis_male_adult_54_years	chr3	12825762	12825768	12825767	+	RAMPAGE_only	37	38	64	2.376449	5.240250	chr3	12825723	12825953	SINE|MIR|MIR	+	chr3	12827445	12871916	CAND2|ENST00000454887.1	+	12827445,12831464,12850658,12871735	12827604,12831572,12850860,12871916	0.562500
testis_male_adult_54_years	chr7	38392709	38392720	38392719	-	High_confidence	20	20	37	1.373884	4.777021	chr7	38392377	38392684	SINE|Alu|AluY	-	chr7	38389847	38392719	AMPH|ENST00000460887.1	-	38389847,38391747,38392617	38389905,38392017,38392719	0.756757
testis_male_adult_54_years	chr9	37752900	37752901	37752900	+	High_confidence	257	260	274	10.174171	4.524591	chr9	37752210	37753281	LTR|ERV1|LTR12C	+	chr9	37752888	37778972	STRG.201225.2	+	37752888,37761902,37762576,37768075,37769940,37770671,37776281,37777600	37753852,37762117,37763753,37768228,37770019,37770739,37776405,37778972	0.974453
testis_male_adult_54_years	chrY	3786819	3786851	3786837	+	High_confidence	5	5	23	0.854036	4.095795	chrY	3785809	3788528	LTR|ERV1|LTR46-int	-	chrY	3786278	3838594	STRG.371674.1	+	3786278,3800441,3803828,3804384	3786390,3800746,3803952,3838594	0.869565
testis_male_adult_54_years	chr10	18584412	18584440	18584439	-	RAMPAGE_only	8	8	33	1.225356	4.812500	chr10	18583820	18584476	LTR|ERV1|LTR36	+	chr10	18545560	18619577	STRG.215064.4	-	18545560,18551822,18585948,18596207,18609844,18614459,18616183	18548237,18551971,18586093,18596327,18609926,18614613,18619577	0.757576
testis_male_adult_54_years	chr6	53503108	53503144	53503143	+	High_confidence	28	29	127	4.715765	5.748346	chr6	53503031	53503407	LTR|ERVL-MaLR|MLT1A0	+	chr6	53503184	53506919	AL033397.2|ENST00000508884.1	+	53503184,53506153,53506797	53503328,53506434,53506919	0.850394
testis_male_adult_54_years	chr3	57267745	57267782	57267772	+	RAMPAGE_only	5	6	25	0.928300	3.772055	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.920000
testis_male_adult_54_years	chr14	57799483	57799538	57799483	-	RAMPAGE_only	3	3	19	0.705508	4.247928	chr14	57799017	57803576	LINE|L1|L1PA11	+	chr14	57563921	57865874	SLC35F4|NM_001206920.1	-	57563921,57566474,57569787,57571893,57581213,57589215,57593938,57865722	57564376,57566564,57569980,57572019,57581433,57589510,57594124,57865874	0.526316
testis_male_adult_54_years	chr2	38515783	38515807	38515806	-	High_confidence	2	2	7	0.259924	2.584963	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.571429
testis_male_adult_54_years	chr14	70223664	70223737	70223664	-	High_confidence	5	5	40	1.485280	4.132840	chr14	70223543	70223937	LTR|ERV1|MER61B	-	chr14	70208225	70223687	STRG.285151.1	-	70208225,70209965,70212557,70223259	70209042,70210393,70212649,70223687	0.650000
testis_male_adult_54_years	chr4	123032871	123032886	123032882	+	RAMPAGE_only	50	50	164	6.089650	6.489670	chr4	123032713	123033033	DNA|TcMar-Tigger|MER47B	+	chr4	123030688	123319450	STRG.102042.2	+	123030688,123056386,123057208,123090578,123256015,123313887	123032909,123056440,123057288,123090705,123256180,123319450	0.609756
testis_male_adult_54_years	chr3	167303634	167303652	167303650	-	RAMPAGE_only	3	5	10	0.371320	3.321928	chr3	167303119	167303886	LINE|L1|L1MEd	-	chr3	167240637	167282572	ZBBX|ENST00000465071.1	-	167240637,167242504,167282237	167240919,167242643,167282572	0.500000
testis_male_adult_54_years	chr3	126748971	126748998	126748971	+	RAMPAGE_only	19	20	48	1.782337	4.697894	chr3	126748776	126749205	LINE|L2|L2b	-	chr3	126730563	126960391	CHCHD6|ENST00000513253.1	+	126730563,126733077,126852646,126914679,126957424,126960195	126730630,126733222,126852730,126914750,126957551,126960391	0.770833
testis_male_adult_54_years	chr22	30971746	30971763	30971762	+	High_confidence	7	9	18	0.668376	3.852169	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.777778
testis_male_adult_54_years	chr7	152515682	152515683	152515682	-	High_confidence	70	70	79	2.933429	4.973816	chr7	152515329	152515917	LTR|ERV1|LTR12_	-	chr7	152514058	152515664	STRG.177412.1	-	152514058	152515664	0.987342
testis_male_adult_54_years	chr4	65241803	65241820	65241805	-	High_confidence	16	26	57	2.116525	5.014384	chr4	65241173	65242746	LTR|ERV1|MER52A	-	chr4	65225866	65241814	AC018683.1|ENST00000649562.1	-	65225866,65238383,65241181	65226010,65238464,65241814	0.807018
testis_male_adult_54_years	chr20	5445720	5445740	5445720	-	High_confidence	214	220	488	18.120421	7.363766	chr20	5445444	5445928	LTR|ERVL-MaLR|MLT1F	-	chr20	5434284	5445740	LINC00658|ENST00000609252.1	-	5434284,5437099,5438209,5445503	5434405,5437273,5438315,5445740	0.620902
testis_male_adult_54_years	chr7	101217578	101217595	101217594	-	High_confidence	6	6	11	0.408452	3.321928	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.909091
testis_male_adult_54_years	chr5	4866506	4866547	4866520	+	High_confidence	11	11	79	2.933429	5.138729	chr5	4866518	4866646	LTR|ERVL-MaLR|MLT1A0	-	chr5	4866518	4868695	STRG.111765.1	+	4866518,4867278	4866587,4868695	0.848101
testis_male_adult_54_years	chr20	22471537	22471563	22471537	-	High_confidence	7	8	29	1.076828	4.310443	chr20	22471304	22471719	LTR|ERVL-MaLR|MLT1C	-	chr20	22470960	22471552	STRG.342814.1	-	22470960	22471552	0.724138
testis_male_adult_54_years	chr4	70133548	70133606	70133563	+	High_confidence	18	22	80	2.970561	5.065634	chr4	70133589	70133920	DNA|hAT-Charlie|MER1B	+	chr4	70133596	70147202	STRG.95732.1	+	70133596,70136047,70139908,70141391,70141507,70142427,70143163,70146898	70133660,70136072,70139935,70141415,70141552,70142553,70143206,70147202	0.700000
testis_male_adult_54_years	chr11	94975709	94975728	94975727	-	RAMPAGE_only	9	11	39	1.448148	5.037401	chr11	94975634	94975773	LINE|L2|L2a	+	chr11	94962621	94973612	CWC15|NM_016403.3	-	94962621,94966294,94969988,94970976,94971374,94972054,94973497	94963514,94966413,94970096,94971065,94971487,94972193,94973612	0.846154
testis_male_adult_54_years	chr6	17018168	17018169	17018168	+	RAMPAGE_only	5	5	8	0.297056	3.000000	chr6	17017970	17018985	DNA|TcMar-Tigger|Tigger3b	+	chr6	17015824	17124164	STRG.136979.2	+	17015824,17018129,17114961,17120606	17015925,17018277,17115139,17124164	0.500000
testis_male_adult_54_years	chr8	110202493	110202494	110202493	+	High_confidence	20	21	29	1.076828	4.494680	chr8	110201761	110203133	LTR|ERV1|LTR12C	-	chr8	110202451	110564396	STRG.192277.1	+	110202451,110418831,110564235	110203134,110418923,110564396	0.827586
testis_male_adult_54_years	chr2	195572985	195572992	195572985	-	High_confidence	7	7	12	0.445584	3.251629	chr2	195572709	195573020	SINE|Alu|AluJo	+	chr2	195569627	195572970	LINC01827|ENST00000432711.1	-	195569627,195572650	195569862,195572970	0.916667
testis_male_adult_54_years	chr4	170226540	170226587	170226546	+	High_confidence	6	6	38	1.411016	4.932138	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.500000
testis_male_adult_54_years	chr7	100351255	100351322	100351255	+	RAMPAGE_only	9	11	45	1.670940	4.830199	chr7	100351233	100351301	SINE|Alu|FLAM_A	-	chr7	100338196	100351900	STRG.169954.43	+	100338196,100338772,100345864,100349716,100351251	100338264,100338889,100345968,100349887,100351900	0.955556
testis_male_adult_54_years	chr10	28335284	28335306	28335305	-	High_confidence	17	21	87	3.230485	4.815395	chr10	28335237	28335330	SINE|Alu|AluYc	-	chr10	28334783	28335312	STRG.216126.2	-	28334783	28335312	0.885057
testis_male_adult_54_years	chr13	85363595	85363619	85363618	+	High_confidence	48	50	78	2.896297	5.426903	chr13	85362954	85364056	LTR|ERV1|LTR12D	+	chr13	85363602	85544662	LINC00351|NR_046989.1	+	85363602,85533075,85542237,85544375	85364095,85533203,85542330,85544662	0.935897
testis_male_adult_54_years	chr5	78388844	78388870	78388844	+	RAMPAGE_only	3	4	9	0.334188	3.169925	chr5	78388798	78388903	LINE|CR1|L3	-	chr5	78360627	78416635	SCAMP1|ENST00000511551.2	+	78360627,78370619,78388836,78415519,78416540	78360728,78370805,78388914,78415618,78416635	0.666667
testis_male_adult_54_years	chr6	27803875	27803876	27803875	-	High_confidence	4	4	7	0.259924	2.807355	chr6	27803694	27804019	LTR|ERVL-MaLR|MLT1A0	-	chr6	27803478	27803709	STRG.139104.1	-	27803478	27803709	0.571429
testis_male_adult_54_years	chr8	2727222	2727225	2727222	+	High_confidence	2	2	6	0.222792	2.584963	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.833333
testis_male_adult_54_years	chr13	48444659	48444670	48444669	-	High_confidence	112	114	225	8.354702	7.047618	chr13	48444533	48444706	LTR|ERVL|MER21A	-	chr13	48389566	48444667	LPAR6|ENST00000465365.6	-	48389566,48401297,48404180,48408623,48415699,48417166,48422649,48423992,48426579,48439608,48444552	48389812,48401407,48404263,48408767,48415810,48417320,48422790,48424119,48426795,48439812,48444667	0.600000
testis_male_adult_54_years	chr9	97188519	97188588	97188519	-	RAMPAGE_only	3	3	17	0.631244	3.286896	chr9	97188329	97188625	SINE|Alu|AluSc	+	chr9	97156569	97221235	ANKRD18CP|ENST00000354752.5	-	97156569,97160181,97161754,97162564,97170606,97172947,97178263,97179996,97185441,97187453,97191730,97194702,97200458,97204860,97211372,97221029	97156585,97160402,97161966,97162846,97170736,97173060,97178413,97180916,97185515,97187507,97191798,97194840,97200565,97205034,97211487,97221235	0.882353
testis_male_adult_54_years	chr17	34859043	34859057	34859056	-	High_confidence	4	5	10	0.371320	3.169925	chr17	34858833	34859308	LTR|ERVL|LTR33	+	chr17	34857979	34859446	STRG.315768.1	-	34857979	34859446	0.500000
testis_male_adult_54_years	chr3	171710480	171710499	171710488	-	High_confidence	2	2	9	0.334188	2.750000	chr3	171710343	171710666	DNA|hAT-Charlie|MER1B	-	chr3	171642783	171711308	STRG.83312.4	-	171642783,171644909,171659212,171662059,171674499,171676714,171677565,171686684,171687370,171688675,171692331,171699744,171708754,171709559,171709940	171642889,171645023,171659301,171662170,171674613,171676833,171677694,171686798,171687584,171688876,171692442,171699826,171708838,171709709,171711308	0.888889
testis_male_adult_54_years	chr1	112005704	112005727	112005704	+	High_confidence	4	4	11	0.408452	3.095795	chr1	112005628	112005754	DNA|hAT-Charlie|MER5A	-	chr1	112005976	112008132	STRG.14594.1	+	112005976,112007050,112007907	112006208,112007099,112008132	0.909091
testis_male_adult_54_years	chr4	62165530	62165540	62165539	-	High_confidence	21	22	44	1.633808	4.896821	chr4	62165481	62166601	LTR|ERVL|HERVL-int	+	chr4	62071751	62165545	ADGRL3-AS1|ENST00000504135.5	-	62071751,62072752,62118061,62120227,62136665,62155941,62157322,62165513	62071779,62072877,62118102,62120289,62136756,62156041,62157385,62165545	0.818182
testis_male_adult_54_years	chr1	239408133	239408154	239408133	+	RAMPAGE_only	3	3	12	0.445584	3.584963	chr1	239407991	239408310	LTR|ERVL-MaLR|THE1C	+	chr1	239386644	239719691	STRG.27814.1	+	239386644,239492708,239545640,239632223,239678185,239718795	239387227,239492807,239545749,239632286,239678288,239719691	0.500000
testis_male_adult_54_years	chr7	92244918	92244944	92244943	-	High_confidence	8	8	16	0.594112	3.875000	chr7	92244870	92245026	DNA|hAT-Charlie|MER20B	+	chr7	92200357	92245795	KRIT1|ENST00000412043.6	-	92200357,92201306,92213194,92213891,92214610,92221901,92222821,92225719,92226525,92234448,92234807,92235402,92236412,92237666,92240992,92242033,92244001,92244901,92245426	92200804,92201423,92213401,92213979,92214777,92222053,92222978,92225827,92226682,92234592,92234923,92235646,92236542,92237759,92241152,92242137,92244149,92245171,92245795	0.875000
testis_male_adult_54_years	chr2	115757575	115757614	115757613	-	High_confidence	16	22	34	1.262488	3.200133	chr2	115757273	115757645	LTR|ERVL-MaLR|THE1B	-	chr2	115754319	115757434	STRG.44489.2	-	115754319,115756785,115757366	115754764,115756844,115757434	0.764706
testis_male_adult_54_years	chr2	195516089	195516090	195516089	-	RAMPAGE_only	5	5	7	0.259924	2.807355	chr2	195515497	195516972	LTR|ERV1|LTR12C	+	chr2	195507224	195519268	STRG.55093.1	-	195507224	195519268	0.571429
testis_male_adult_54_years	chr12	124355446	124355467	124355446	-	RAMPAGE_only	3	6	14	0.519848	3.546594	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124324415	124422554	NCOR2|ENST00000356219.7	-	124324415,124326190,124327408,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124398118,124400500,124402403,124419956,124422500	124325583,124326370,124327633,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362297,124363799,124372610,124374463,124378384,124385887,124398181,124400673,124402561,124420055,124422554	0.857143
testis_male_adult_54_years	chr21	33170639	33170684	33170654	-	High_confidence	24	27	115	4.270181	6.156062	chr21	33170423	33170674	LINE|L2|L2b	+	chr21	33165469	33170649	LINC01548|ENST00000451980.3	-	33165469,33168442,33169695,33170140,33170563	33165691,33168581,33169833,33170251,33170649	0.904348
testis_male_adult_54_years	chr1	119697342	119697395	119697342	+	RAMPAGE_only	2	3	17	0.631244	3.690117	chr1	119693242	119697521	LINE|L1|L1PA6	-	chr1	119711714	119744226	PHGDH|ENST00000641023.1	+	119711714,119721169,119723375,119726850,119727003,119734633,119735294,119737113,119740385,119741766,119742806,119743885	119712160,119721321,119723441,119726905,119727102,119734766,119735443,119737266,119740518,119741897,119743044,119744226	1.000000
testis_male_adult_54_years	chr1	64848120	64848127	64848126	-	High_confidence	5	6	13	0.482716	3.700440	chr1	64848086	64848254	SINE|MIR|MIR	+	chr1	64841473	64848107	JAK1|ENST00000465376.5	-	64841473,64844063,64844753,64845512,64846648,64847531,64848069	64841601,64844215,64844889,64845640,64846736,64847675,64848107	0.846154
testis_male_adult_54_years	chr8	144853500	144853556	144853555	-	High_confidence	8	8	50	1.856601	5.198563	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	0.980000
testis_male_adult_54_years	chr4	184714093	184714108	184714104	-	High_confidence	14	15	50	1.856601	4.498974	chr4	184714076	184714826	LINE|L1|L1MEf	+	chr4	184698193	184713941	CENPU|ENST00000506535.1	-	184698193,184702088,184702362,184710071,184710325,184712943,184713868	184698318,184702136,184702441,184710180,184710406,184713013,184713941	0.680000
testis_male_adult_54_years	chr6	37349096	37349113	37349096	+	RAMPAGE_only	10	11	22	0.816904	4.321928	chr6	37348783	37349848	LINE|L1|L1MC3	+	chr6	37353971	37394738	RNF8|NR_046399.1	+	37353971,37360445,37368377,37371511,37374619,37376925,37381149,37390741	37354275,37360574,37369218,37371574,37374709,37377033,37381354,37394738	0.681818
testis_male_adult_54_years	chr6	180391	180392	180391	+	High_confidence	90	91	125	4.641501	5.224276	chr6	179399	180718	LTR|ERV1|LTR12C	+	chr6	180409	182615	STRG.133988.1	+	180409	182615	0.960000
testis_male_adult_54_years	chr9	98943562	98943617	98943575	+	High_confidence	17	17	41	1.522412	4.549761	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
testis_male_adult_54_years	chr15	84778198	84778199	84778198	+	High_confidence	7	8	9	0.334188	3.000000	chr15	84778174	84778672	LTR|ERV1|LTR9B	-	chr15	84778259	84802438	ZNF592|ENST00000559607.1	+	84778259,84782656,84790704,84797868,84798314,84798587,84799097,84799841,84801862	84778312,84784895,84790872,84798045,84798474,84798875,84799210,84799977,84802438	0.777778
testis_male_adult_54_years	chr9	4606169	4606204	4606185	-	RAMPAGE_only	2	3	13	0.482716	3.418296	chr9	4605799	4611811	LINE|L1|L1PA3	+	chr9	4600519	4666347	SPATA6L|ENST00000381890.9	-	4600519,4605346,4622407,4625326,4629090,4635274,4646486,4656040,4661898,4666211	4600809,4605440,4622510,4625566,4629168,4635399,4646528,4656089,4662036,4666347	0.538462
testis_male_adult_54_years	chr7	2173350	2173355	2173354	-	RAMPAGE_only	3	3	7	0.259924	2.584963	chr7	2173036	2173807	LINE|L1|HAL1	-	chr7	1815793	2230418	MAD1L1|ENST00000265854.11	-	1815793,1898199,1936686,1957628,1980452,2002064,2014501,2069193,2149151,2213211,2215884,2216156,2217961,2219331,2222574,2225409,2229983	1816228,1898390,1936897,1957719,1980541,2002121,2014642,2069338,2149238,2213273,2215999,2216287,2218043,2219456,2222754,2225550,2230418	0.571429
testis_male_adult_54_years	chr6	53051973	53052002	53051986	+	High_confidence	17	20	75	2.784901	5.627226	chr6	53051931	53052290	LINE|L1|L1PA8A	-	chr6	53051990	53073638	FBXO9|ENST00000459845.6	+	53051990,53057762,53067904,53071056,53073480	53052033,53057824,53068006,53071143,53073638	0.666667
testis_male_adult_54_years	chr1	211366484	211366508	211366507	+	RAMPAGE_only	4	4	12	0.445584	2.913977	chr1	211366365	211366790	LINE|L2|L2c	-	chr1	211326836	211374785	STRG.24202.2	+	211326836,211353238,211354409,211356366,211359911,211360701,211361087,211365375,211371301,211372127	211326889,211353457,211354467,211356468,211360076,211360779,211361162,211369592,211371470,211374785	0.916667
testis_male_adult_54_years	chr3	13480041	13480094	13480041	-	High_confidence	6	6	32	1.188224	4.875000	chr3	13479881	13479998	SINE|MIR|MIR3	-	chr3	13476981	13480053	HDAC11-AS1|ENST00000424112.2	-	13476981,13479642	13477085,13480053	0.656250
testis_male_adult_54_years	chr10	87517367	87517369	87517367	+	RAMPAGE_only	7	9	13	0.482716	3.251629	chr10	87517376	87517542	LINE|L1|L1ME1	+	chr10	87521114	87552637	MINPP1|ENST00000472891.1	+	87521114,87546572,87552081	87521169,87546695,87552637	0.846154
testis_male_adult_54_years	chr15	43331911	43331953	43331911	+	High_confidence	6	7	15	0.556980	2.840224	chr15	43331694	43331973	LINE|L2|L2-3_Crp	-	chr15	43331974	43345877	ADAL|ENST00000563551.1	+	43331974,43333310,43335695,43340264,43342993,43345853	43332000,43333434,43335826,43340352,43343075,43345877	0.666667
testis_male_adult_54_years	chr3	160015999	160016026	160015999	+	High_confidence	3	4	11	0.408452	3.277613	chr3	160015946	160016117	DNA|hAT-Charlie|MER5A1	-	chr3	160016023	160031423	LINC01100|ENST00000471921.2	+	160016023,160019136,160020645,160026609,160031178	160016080,160019198,160020744,160026886,160031423	0.636364
testis_male_adult_54_years	chr1	1282160	1282168	1282160	+	High_confidence	9	9	19	0.705508	4.058814	chr1	1282152	1282284	SINE|MIR|MIRb	-	chr1	1282108	1292024	SCNN1D|ENST00000325425.12	+	1282108,1283977,1285570,1285925,1286767,1287108,1287507,1287672,1287938,1290270,1290476,1290636,1290894,1291064,1291253	1282315,1284090,1285664,1286278,1286975,1287299,1287596,1287836,1288037,1290388,1290555,1290694,1290953,1291140,1292024	0.842105
testis_male_adult_54_years	chr3	99863937	99863965	99863964	-	RAMPAGE_only	4	4	13	0.482716	3.084963	chr3	99863716	99863957	LINE|L1|L1ME4b	-	chr3	99848444	99876144	STRG.73010.1	-	99848444,99862601,99863888,99876071	99851070,99862860,99863960,99876144	0.923077
testis_male_adult_54_years	chr3	16361347	16361389	16361351	+	High_confidence	15	15	90	3.341881	6.099219	chr3	16361273	16361700	LINE|L2|L2a	-	chr3	16361275	16372275	STRG.63747.1	+	16361275,16363696,16363860,16371546	16361640,16363834,16363966,16372275	0.577778
testis_male_adult_54_years	chr11	72700354	72700376	72700354	-	High_confidence	6	6	16	0.594112	4.000000	chr11	72700094	72700423	LINE|RTE-X|L4_C_Mam	-	chr11	72685068	72700366	ARAP1|ENST00000495878.5	-	72685068,72686041,72687438,72687687,72688454,72693324,72693691,72694979,72695386,72695541,72695717,72696548,72696982,72697322,72697597,72697910,72699004,72699416,72700017,72700283	72685681,72686191,72687502,72687738,72688537,72693470,72693805,72695097,72695455,72695628,72695865,72696654,72697195,72697486,72697649,72698106,72699107,72699552,72700079,72700366	0.812500
testis_male_adult_54_years	chr6	104446425	104446448	104446425	-	High_confidence	2	2	9	0.334188	3.000000	chr6	104446155	104447635	LTR|ERV1|LTR12C	+	chr6	104428689	104446747	STRG.148472.3	-	104428689,104429472,104446051	104428775,104429532,104446747	0.666667
testis_male_adult_54_years	chr2	61178295	61178296	61178295	+	High_confidence	4	4	7	0.259924	2.521641	chr2	61178267	61178502	SINE|Alu|AluSx3	-	chr2	61178377	61186769	AHSA2P|ENST00000642505.1	+	61178377,61181319,61183546,61184711,61185501,61185979,61186445,61186616	61179171,61181405,61183662,61184800,61185618,61186081,61186497,61186769	1.000000
testis_male_adult_54_years	chr4	4540633	4540640	4540633	-	RAMPAGE_only	3	3	8	0.297056	2.807355	chr4	4540379	4540653	LINE|L2|L2c	+	chr4	4415741	4542010	STX18|ENST00000505286.5	-	4415741,4420863,4423517,4425163,4434769,4438393,4457190,4457422,4459371,4471638,4541796	4416163,4420944,4423587,4425222,4434858,4438509,4457257,4457500,4459487,4471706,4542010	0.875000
testis_male_adult_54_years	chr5	172958855	172958919	172958918	+	High_confidence	14	16	87	3.230485	5.145045	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.954023
testis_male_adult_54_years	chr8	100316362	100316363	100316362	-	High_confidence	138	138	158	5.866858	5.279131	chr8	100315948	100317351	LTR|ERV1|LTR12C	-	chr8	100315565	100316468	STRG.190830.1	-	100315565	100316468	0.987342
testis_male_adult_54_years	chr10	2189491	2189521	2189491	-	High_confidence	15	15	64	2.376449	5.327820	chr10	2189194	2189784	LTR|ERV1|LTR10C	+	chr10	2169139	2189474	AL441943.3|ENST00000418524.6	-	2169139,2172739,2176342,2187656,2189461	2169252,2172834,2176432,2187932,2189474	0.687500
testis_male_adult_54_years	chr15	50582454	50582464	50582463	-	High_confidence	14	16	40	1.485280	4.148600	chr15	50582258	50582553	LINE|L1|L1MEd	-	chr15	50574958	50582464	TRPM7|ENST00000558444.5	-	50574958,50575723,50575868,50578558,50580873,50582434	50575135,50575789,50575919,50578664,50580908,50582464	0.850000
testis_male_adult_54_years	chr1	35739138	35739181	35739146	-	RAMPAGE_only	11	11	29	1.076828	3.878451	chr1	35738800	35739098	SINE|Alu|AluSg	-	chr1	35736404	35769928	CLSPN|ENST00000520551.1	-	35736404,35736913,35737338,35737991,35738454,35739135,35739364,35743140,35743454,35745450,35746765,35747906,35748404,35749466,35749632,35751249,35753744,35760341,35761095,35761997,35762403,35763159,35764265,35765217,35769846	35736606,35737075,35737421,35738097,35738582,35739257,35739529,35743241,35743530,35745562,35746992,35748061,35748604,35749531,35749652,35751506,35753936,35760916,35761204,35762070,35762481,35763321,35764714,35765326,35769928	1.000000
testis_male_adult_54_years	chr18	9593999	9594000	9593999	-	RAMPAGE_only	8	9	10	0.371320	2.641604	chr18	9593938	9594229	SINE|Alu|AluJb	-	chr18	9577063	9595061	PPP4R1|ENST00000580583.5	-	9577063,9584514,9584720,9588088,9588710,9593767,9595017	9577191,9584580,9584828,9588235,9588853,9593874,9595061	0.600000
testis_male_adult_54_years	chr4	183725863	183725864	183725863	+	High_confidence	119	120	127	4.715765	5.706015	chr4	183725578	183726266	LTR|ERV1|LTR12_	+	chr4	183725870	183727590	STRG.109965.1	+	183725870	183727590	0.787402
testis_male_adult_54_years	chr10	127972412	127972436	127972428	-	High_confidence	8	8	38	1.411016	4.378992	chr10	127972288	127972485	SINE|MIR|MIR	+	chr10	127971034	127972417	STRG.227485.1	-	127971034	127972417	1.000000
testis_male_adult_54_years	chr14	55352804	55352863	55352862	+	RAMPAGE_only	7	7	18	0.668376	3.572469	chr14	55352765	55352941	DNA|TcMar-Mariner|MARNA	+	chr14	55271670	55353609	STRG.282792.7	+	55271670,55350380	55318269,55353609	0.888889
testis_male_adult_54_years	chr11	118792827	118792848	118792827	-	RAMPAGE_only	4	4	12	0.445584	3.418296	chr11	118792810	118793159	LTR|ERV1|MER89	+	chr11	118747762	118791263	DDX6|NM_004397.5	-	118747762,118754704,118755401,118756259,118757170,118758773,118759921,118763211,118765208,118768222,118779631,118781120,118786051,118791097	118752097,118754887,118755503,118756323,118757287,118758902,118760044,118763306,118765355,118768352,118779736,118781184,118786518,118791263	0.916667
testis_male_adult_54_years	chr22	17917763	17917783	17917782	-	RAMPAGE_only	5	8	15	0.556980	3.378783	chr22	17917754	17917859	LINE|L2|L2a	+	chr22	17904727	17926919	STRG.353634.18	-	17904727,17906548,17919993	17904839,17906886,17926919	0.600000
testis_male_adult_54_years	chr15	62223878	62224004	62223891	-	High_confidence	7	7	41	1.522412	4.853056	chr15	62223784	62224003	SINE|Alu|AluSq	+	chr15	62194266	62224784	STRG.295622.2	-	62194266,62198803,62201756	62196762,62198874,62224784	0.975610
testis_male_adult_54_years	chr22	25058925	25058939	25058938	-	RAMPAGE_only	401	403	1354	50.276743	5.375546	chr22	25058657	25058903	LTR|ERVL-MaLR|MLT1G	-	chr22	25052121	25065241	AL022323.4|ENST00000623980.1	-	25052121	25065241	0.975628
testis_male_adult_54_years	chr4	102777011	102777022	102777021	+	High_confidence	5	5	9	0.334188	2.500000	chr4	102776544	102777262	LINE|L1|L1MB7	+	chr4	102777036	102799575	LOC102723704|NR_125932.1	+	102777036,102777896,102778807,102779773,102799427	102777223,102778421,102779345,102779881,102799575	0.666667
testis_male_adult_54_years	chr2	10201462	10201473	10201463	-	High_confidence	69	113	173	6.423838	6.120443	chr2	10201178	10202321	LTR|ERV1|PABL_A-int	-	chr2	10198576	10201456	STRG.30481.1	-	10198576,10200284,10201240	10199274,10200343,10201456	0.959538
testis_male_adult_54_years	chr8	49307110	49307111	49307110	+	High_confidence	25	25	28	1.039696	4.593069	chr8	49306339	49307632	LTR|ERV1|LTR12D	+	chr8	49307119	49309007	STRG.183817.1	+	49307119,49308962	49307575,49309007	0.750000
testis_male_adult_54_years	chr19	39485759	39485794	39485793	+	High_confidence	12	12	20	0.742640	4.142664	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	0.950000
testis_male_adult_54_years	chr7	96358666	96358688	96358666	-	High_confidence	4	4	9	0.334188	2.750000	chr7	96358348	96359121	LTR|ERV1|LTR17	-	chr7	96351594	96358683	STRG.169235.1	-	96351594,96358148	96351676,96358683	0.666667
testis_male_adult_54_years	chr3	13904545	13904546	13904545	+	RAMPAGE_only	6	6	7	0.259924	2.584963	chr3	13903705	13905344	LINE|L1|L1PA10	+	chr3	13901779	13907930	STRG.63258.7	+	13901779	13907930	0.857143
testis_male_adult_54_years	chr3	153155302	153155303	153155302	-	High_confidence	70	70	72	2.673505	5.023796	chr3	153154903	153156285	LTR|ERV1|LTR12C	-	chr3	153108648	153155350	STRG.80595.1	-	153108648,153152730,153154831	153108668,153152919,153155350	0.888889
testis_male_adult_54_years	chr2	219313593	219313594	219313593	+	High_confidence	375	477	520	19.308646	5.967847	chr2	219312637	219314005	LTR|ERV1|LTR12C	+	chr2	219313599	219314978	STRG.58029.1	+	219313599	219314978	0.984615
testis_male_adult_54_years	chr12	4335534	4335543	4335542	+	RAMPAGE_only	12	12	19	0.705508	4.037401	chr12	4335377	4335719	LTR|ERVL-MaLR|MLT1A0	+	chr12	4324642	4354593	STRG.245873.3	+	4324642,4331279,4337038,4349818,4351266,4352259	4324763,4331317,4337160,4349896,4351377,4354593	0.789474
testis_male_adult_54_years	chr6	3254772	3254798	3254772	+	High_confidence	2	2	7	0.259924	2.807355	chr6	3253403	3254826	LTR|ERV1|LTR12C	+	chr6	3254410	3267781	STRG.134802.4	+	3254410,3263683,3267590	3255229,3263759,3267781	0.857143
testis_male_adult_54_years	chr10	1208363	1208390	1208363	-	High_confidence	11	14	51	1.893733	5.275079	chr10	1208241	1208365	LTR|ERVL-MaLR|MLT1C	-	chr10	1201231	1208383	STRG.212132.8	-	1201231,1208065	1202036,1208383	0.568627
testis_male_adult_54_years	chr10	73536385	73536388	73536387	-	RAMPAGE_only	4	7	10	0.371320	3.169925	chr10	73536351	73536426	LINE|L1|L1PBa	+	chr10	73497537	73534770	USP54|ENST00000466048.6	-	73497537,73500654,73504849,73505307,73516374,73520907,73523582,73526646,73529679,73530142,73534599	73499188,73500838,73504990,73505426,73517747,73521027,73523750,73526780,73529911,73530523,73534770	0.700000
testis_male_adult_54_years	chr13	80704950	80704987	80704986	-	RAMPAGE_only	18	18	42	1.559544	5.053056	chr13	80704784	80705387	LTR|ERV1|HERVE-int	+	chr13	80699390	80706778	STRG.272376.1	-	80699390,80704787,80706440	80704244,80704932,80706778	0.952381
testis_male_adult_54_years	chr2	209387417	209387441	209387440	-	High_confidence	3	3	6	0.222792	2.584963	chr2	209387196	209388502	LTR|ERV1|LTR12C	+	chr2	209370105	209387552	STRG.56816.1	-	209370105,209387179	209370194,209387552	0.666667
testis_male_adult_54_years	chr19	51027963	51028038	51028020	-	High_confidence	34	44	168	6.238178	6.007293	chr19	51027996	51028297	DNA|hAT-Tip100|ORSL-2a	-	chr19	51022230	51028034	KLK11|NM_001167605.1	-	51022230,51023091,51024044,51024633,51025591,51027943	51022697,51023228,51024381,51024794,51025666,51028034	0.934524
testis_male_adult_54_years	chr7	153433415	153433450	153433415	+	High_confidence	5	5	29	1.076828	4.430632	chr7	153433059	153433575	LTR|ERV1|LTR9	-	chr7	153433449	153433923	STRG.177302.1	+	153433449	153433923	0.827586
testis_male_adult_54_years	chr1	156252925	156252931	156252930	-	RAMPAGE_only	5	5	10	0.371320	3.321928	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156249223	156282825	SMG5|ENST00000361813.5	-	156249223,156250857,156251402,156252413,156252918,156253448,156259004,156260450,156261332,156263394,156265780,156266540,156267469,156268114,156268289,156272319,156273360,156274596,156277084,156277924,156278935,156282606	156250670,156250996,156251477,156252504,156253078,156253508,156259163,156260626,156261408,156263570,156266380,156266678,156267678,156268183,156268415,156272398,156273450,156274686,156277241,156278048,156279034,156282825	0.800000
testis_male_adult_54_years	chr1	78620056	78620058	78620057	+	High_confidence	6	10	10	0.371320	3.121928	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.900000
testis_male_adult_54_years	chr9	84467890	84467905	84467904	+	RAMPAGE_only	13	13	20	0.742640	3.208695	chr9	84467869	84468227	LTR|ERVL-MaLR|MLT1A0	+	chr9	84409510	84619516	STRG.205403.1	+	84409510,84412081,84497468,84521061,84538990,84552233,84557435,84577531,84578770,84583196,84584082,84611636,84611849,84615073,84619288	84409840,84412198,84497746,84521225,84539083,84552323,84558054,84577658,84578869,84583283,84584222,84611749,84611997,84615204,84619516	0.600000
testis_male_adult_54_years	chr19	49086488	49086547	49086520	+	High_confidence	37	50	135	5.012821	5.965178	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.881481
testis_male_adult_54_years	chr11	82404352	82404387	82404352	-	High_confidence	12	12	27	1.002564	4.623517	chr11	82403718	82405096	LTR|ERV1|LTR12C	+	chr11	82355982	82404396	STRG.237684.5	-	82355982,82403678	82356628,82404396	0.518519
testis_male_adult_54_years	chr6	6285853	6285863	6285853	-	High_confidence	6	6	18	0.668376	3.969816	chr6	6285632	6286116	LTR|ERV1|MER50	+	chr6	6144199	6285857	STRG.135195.2	-	6144199,6151812,6167457,6174579,6181987,6195796,6197222,6222032,6224685,6248311,6250810,6266557,6285810	6145772,6151949,6167618,6174867,6182141,6195885,6197326,6222171,6224860,6248419,6250929,6266809,6285857	0.944444
testis_male_adult_54_years	chr7	107549258	107549262	107549261	-	High_confidence	8	8	13	0.482716	3.084963	chr7	107549198	107549398	LINE|L2|L2a	+	chr7	107372594	107549259	COG5|ENST00000475638.6	-	107372594,107412501,107527236,107548110,107548277,107549210	107372760,107412632,107527357,107548180,107548332,107549259	0.923077
testis_male_adult_54_years	chr2	219279068	219279097	219279072	+	High_confidence	6	6	28	1.039696	4.254525	chr2	219278766	219279080	LINE|L2|L2c	-	chr2	219279266	219286900	DNAJB2|ENST00000336576.9	+	219279266,219279797,219280577,219281717,219281938,219282836,219283132,219283418,219284631	219279518,219279898,219280687,219281771,219282061,219282929,219283235,219283489,219286900	0.892857
testis_male_adult_54_years	chr16	49454194	49454225	49454224	+	High_confidence	9	9	27	1.002564	4.606739	chr16	49454082	49454228	LTR|ERVL-MaLR|MLT1L	+	chr16	49454228	49457269	AC007861.2|ENST00000573819.1	+	49454228,49456773	49454303,49457269	0.629630
testis_male_adult_54_years	chr4	141332616	141332617	141332616	-	High_confidence	523	526	604	22.427735	4.901613	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.975166
testis_male_adult_54_years	chr4	155082502	155082550	155082549	-	High_confidence	15	16	81	3.007693	5.943620	chr4	155082194	155082506	DNA|hAT-Tip100|Zaphod2	-	chr4	155071510	155082562	STRG.106381.1	-	155071510,155076364,155079788,155082333	155072483,155076495,155079930,155082562	0.679012
testis_male_adult_54_years	chr7	39829893	39829910	39829909	+	High_confidence	3	3	6	0.222792	2.584963	chr7	39829769	39830075	SINE|Alu|AluYc	-	chr7	39829942	39836952	STRG.162909.1	+	39829942,39830905,39836090,39836699	39830214,39830978,39836212,39836952	0.833333
testis_male_adult_54_years	chr11	80137132	80137151	80137132	+	High_confidence	3	3	12	0.445584	3.584963	chr11	80137054	80137842	LINE|L1|L1MB1	-	chr11	80137261	80137725	STRG.237481.1	+	80137261	80137725	0.583333
testis_male_adult_54_years	chr22	47517191	47517229	47517209	-	High_confidence	28	29	130	4.827161	4.069351	chr22	47516845	47517324	LTR|ERVL-MaLR|MLT1H2	-	chr22	47516912	47517223	STRG.357496.1	-	47516912	47517223	0.976923
testis_male_adult_54_years	chr12	28571046	28571056	28571055	+	RAMPAGE_only	3	3	11	0.408452	2.646439	chr12	28570604	28571280	DNA|TcMar-Tigger|MER44C	-	chr12	28549062	28573859	CCDC91|ENST00000542814.5	+	28549062,28571216,28573239	28549130,28571263,28573859	0.818182
testis_male_adult_54_years	chr4	187201886	187201913	187201886	-	High_confidence	29	29	84	3.119089	5.460615	chr4	187201551	187202085	LTR|ERVL-MaLR|MLT1F2	-	chr4	187192361	187201906	STRG.110412.2	-	187192361,187201626	187192969,187201906	0.630952
testis_male_adult_54_years	chr3	188947212	188947237	188947236	+	High_confidence	17	19	33	1.225356	4.452820	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.575758
testis_male_adult_54_years	chr2	227164620	227164621	227164620	+	High_confidence	14	14	15	0.556980	3.521641	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164569	227294204	STRG.58897.1	+	227164569,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259796,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227294204	0.600000
testis_male_adult_54_years	chr9	88077849	88077910	88077909	-	High_confidence	8	10	45	1.670940	4.739091	chr9	88077653	88078060	LTR|ERVL-MaLR|MLT1A	-	chr9	88066434	88077900	LOC102724156|NR_135137.1	-	88066434,88077382,88077722	88066781,88077483,88077900	0.866667
testis_male_adult_54_years	chr1	87158886	87158918	87158903	+	RAMPAGE_only	2	2	8	0.297056	2.807355	chr1	87158786	87158963	SINE|MIR|MIR	-	chr1	87129764	87168505	LINC01140|ENST00000469312.6	+	87129764,87133613,87165388,87168135	87129994,87133718,87165981,87168505	0.625000
testis_male_adult_54_years	chr5	19142319	19142342	19142319	-	High_confidence	39	39	117	4.344445	5.859261	chr5	19142064	19143334	LTR|ERV1|LTR12E	-	chr5	18965860	19142346	AC106744.1|ENST00000504827.1	-	18965860,19142057	18966231,19142346	0.641026
testis_male_adult_54_years	chr19	14018337	14018350	14018349	+	RAMPAGE_only	6	6	14	0.519848	3.392747	chr19	14018123	14018421	SINE|Alu|AluSq2	+	chr19	14028147	14031558	RLN3|NM_001311197.1	+	14028147,14030244,14030709	14028394,14030356,14031558	0.785714
testis_male_adult_54_years	chr5	170267249	170267278	170267253	-	High_confidence	3	4	19	0.705508	3.725481	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.842105
testis_male_adult_54_years	chr4	188615647	188615648	188615647	-	High_confidence	50	50	59	2.190789	4.400646	chr4	188615247	188615908	LTR|ERV1|LTR12_	-	chr4	188614928	188615641	STRG.110714.1	-	188614928	188615641	0.949153
testis_male_adult_54_years	chr8	103572465	103572479	103572478	+	RAMPAGE_only	3	3	7	0.259924	2.584963	chr8	103572478	103573066	LINE|L1|L1P4	-	chr8	103500750	104014615	RIMS2|ENST00000632716.1	+	103500750,103697085,103716308,103766226,103885297,103910133,103912052,103915494,103916413,103918440,103921671,103931262,103936550,103942772,103961064,103975349,103989304,103998184,104013441,104014505	103501062,103697296,103716320,103766537,103886223,103910201,103912172,103915594,103916537,103918487,103921784,103931393,103936722,103942926,103961133,103975506,103989421,103998250,104013621,104014615	0.571429
testis_male_adult_54_years	chr18	63490092	63490111	63490110	+	High_confidence	3	3	6	0.222792	2.584963	chr18	63489910	63490203	SINE|Alu|AluY	+	chr18	63490617	63503375	SERPINB5|ENST00000465652.5	+	63490617,63492952,63499119,63503329	63490714,63493095,63499287,63503375	0.666667
testis_male_adult_54_years	chr22	30972068	30972081	30972080	+	High_confidence	2	4	7	0.259924	2.584963	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30972262	30976063	TUG1|ENST00000602393.1	+	30972262,30975169	30973601,30976063	0.857143
testis_male_adult_54_years	chr22	22494081	22494105	22494104	-	RAMPAGE_only	4	5	13	0.482716	3.584963	chr22	22493886	22494222	LTR|ERVL-MaLR|MLT1A	+	chr22	22484872	22489468	ZNF280B|ENST00000613655.1	-	22484872,22486860	22485978,22489468	0.846154
testis_male_adult_54_years	chr18	9588101	9588121	9588114	-	RAMPAGE_only	3	3	12	0.445584	3.459432	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9547712	9614505	PPP4R1|ENST00000285124.12	-	9547712,9549196,9550051,9550277,9553321,9557220,9559418,9561979,9562921,9563377,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9595017,9614225,9614477	9547952,9549338,9550186,9550398,9553422,9557382,9559604,9562075,9563046,9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9595102,9614270,9614505	0.916667
testis_male_adult_54_years	chr21	36347861	36347881	36347861	+	High_confidence	12	13	30	1.113960	4.556088	chr21	36347587	36347919	LINE|L2|L2b	-	chr21	36347871	36360049	MORC3|ENST00000485299.1	+	36347871,36349310,36356619,36359954	36348260,36349408,36356724,36360049	0.900000
testis_male_adult_54_years	chr5	88282791	88282810	88282791	+	RAMPAGE_only	4	4	8	0.297056	3.000000	chr5	88282583	88283084	DNA|TcMar-Tigger|Tigger7	-	chr5	88269046	88287656	TMEM161B-AS1|ENST00000506584.5	+	88269046,88270525,88282041,88282756,88283009,88285740,88287435	88269119,88270585,88282106,88282866,88283086,88285851,88287656	1.000000
testis_male_adult_54_years	chr17	59620042	59620123	59620048	+	High_confidence	7	10	61	2.265053	5.134148	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.885246
testis_male_adult_54_years	chr7	79616549	79616552	79616549	+	High_confidence	13	13	20	0.742640	4.321928	chr7	79616289	79616843	LTR|ERV1|LTR12_	+	chr7	79616727	79617004	STRG.165918.1	+	79616727	79617004	0.550000
testis_male_adult_54_years	chr2	33797847	33797848	33797847	+	High_confidence	17	17	25	0.928300	3.914866	chr2	33797498	33798174	LTR|ERV1|LTR12	+	chr2	33797790	33801790	STRG.33727.1	+	33797790	33801790	0.760000
testis_male_adult_54_years	chr15	40657076	40657098	40657076	+	RAMPAGE_only	7	7	13	0.482716	2.815072	chr15	40657015	40657149	LINE|L2|L2	+	chr15	40623131	40664339	KNL1|ENST00000526913.5	+	40623131,40628069,40628610,40629272,40640911,40644996,40645655,40646986,40650300,40650543,40651470,40652004,40654908,40657041,40657354,40659338,40662073,40663334	40625640,40628208,40628678,40629371,40641027,40645087,40645772,40647074,40650378,40650583,40651572,40652105,40654977,40657151,40657473,40659461,40662683,40664339	1.000000
testis_male_adult_54_years	chr3	45307777	45307792	45307783	+	High_confidence	2	2	7	0.259924	2.584963	chr3	45306485	45308078	LTR|ERV1|LTR12C	+	chr3	45307674	45310163	STRG.66957.1	+	45307674,45309757	45308475,45310163	0.857143
testis_male_adult_54_years	chr2	193502728	193502786	193502777	+	High_confidence	41	42	155	5.755462	5.813244	chr2	193501468	193502973	LTR|ERV1|LTR12C	-	chr2	193502779	193503864	STRG.54739.1	+	193502779	193503864	0.935484
testis_male_adult_54_years	chr11	19135466	19135482	19135466	-	High_confidence	8	8	22	0.816904	4.297079	chr11	19135060	19141079	LINE|L1|L1PA3	+	chr11	19118217	19135589	STRG.231319.1	-	19118217,19135404	19118624,19135589	0.727273
testis_male_adult_54_years	chr2	88939803	88939859	88939858	-	High_confidence	17	17	73	2.710637	5.527297	chr2	88939619	88940041	LTR|ERVL|MER70A	-	chr2	88938345	88939527	STRG.41575.1	-	88938345	88939527	0.821918
testis_male_adult_54_years	chr3	192123145	192123150	192123145	-	High_confidence	16	16	38	1.411016	4.238335	chr3	192123060	192123611	LTR|ERVL|LTR33C	-	chr3	192119475	192123173	STRG.86591.2	-	192119475,192123050	192120096,192123173	0.842105
testis_male_adult_54_years	chr22	36889464	36889465	36889464	-	High_confidence	9	9	12	0.445584	3.418296	chr22	36889236	36889561	SINE|Alu|AluY	+	chr22	36887751	36889238	STRG.356201.1	-	36887751	36889238	0.583333
testis_male_adult_54_years	chrX	97237682	97237694	97237693	+	RAMPAGE_only	3	3	8	0.297056	2.750000	chrX	97237564	97237880	SINE|Alu|AluYk4	-	chrX	96685016	97469765	DIAPH2|ENST00000373054.5	+	96685016,96735757,96738585,96758153,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348117,97383908,97429649,97469693	96685190,96735790,96738762,96758258,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247841,97348280,97384044,97429745,97469765	0.750000
testis_male_adult_54_years	chr2	233311511	233311522	233311521	+	RAMPAGE_only	3	3	10	0.371320	2.947703	chr2	233311275	233311611	LTR|ERVL-MaLR|MLT1L	-	chr2	233307931	233347055	SAG|ENST00000412969.6	+	233307931,233309161,233316074,233318750,233322945,233327120,233329492,233331639,233334961,233338675,233340454,233342270,233346402,233346806	233308022,233309279,233316135,233318795,233323005,233328613,233329577,233331712,233335099,233338753,233340478,233342326,233346412,233347055	0.700000
testis_male_adult_54_years	chr11	115396708	115396745	115396744	+	High_confidence	13	13	26	0.965432	4.136842	chr11	115396628	115396895	DNA|DNA|UCON78	-	chr11	115396755	115397658	LOC105369507|NR_135102.1	+	115396755,115397268	115396891,115397658	0.807692
testis_male_adult_54_years	chr20	5445566	5445597	5445596	-	High_confidence	3	3	8	0.297056	2.500000	chr20	5445444	5445928	LTR|ERVL-MaLR|MLT1F	-	chr20	5431991	5445686	LINC00658|ENST00000420529.5	-	5431991,5433788,5434171,5437099,5445503	5432638,5434092,5434405,5437273,5445686	1.000000
testis_male_adult_54_years	chr15	26114187	26114200	26114187	-	High_confidence	24	24	38	1.411016	4.947703	chr15	26113995	26114499	LTR|ERV1|LTR12F	-	chr15	26113686	26114161	STRG.290173.1	-	26113686	26114161	0.578947
testis_male_adult_54_years	chr15	62186086	62186087	62186086	-	RAMPAGE_only	103	103	107	3.973125	5.676257	chr15	62185768	62187127	LTR|ERV1|LTR12C	-	chr15	62173898	62187688	STRG.295622.1	-	62173898,62185877	62174545,62187688	0.691589
testis_male_adult_54_years	chr1	52181634	52181707	52181667	+	RAMPAGE_only	3	5	20	0.742640	4.021928	chr1	52181047	52182764	Retroposon|SVA|SVA_D	+	chr1	52216379	52346686	ZFYVE9|ENST00000371591.1	+	52216379,52233170,52237487,52263772,52266654,52268462,52274463,52278491,52281660,52293452,52295894,52303820,52332767,52334687,52337771,52340125,52344767,52346059	52216474,52233276,52239595,52263872,52266831,52268632,52274584,52278614,52281816,52293677,52295977,52303925,52332918,52334768,52337934,52340231,52344944,52346686	0.650000
testis_male_adult_54_years	chr3	134037603	134037638	134037603	-	RAMPAGE_only	3	3	13	0.482716	3.700440	chr3	134037563	134037655	SINE|MIR|MIR	+	chr3	133950951	134029925	SLCO2A1|ENST00000464676.5	-	133950951,133953662,133954965,133973662,133979480,133998647,134029706	133951344,133953761,133955193,133973825,133979618,133998786,134029925	0.692308
testis_male_adult_54_years	chr19	38856082	38856134	38856133	-	RAMPAGE_only	3	3	16	0.594112	3.875000	chr19	38854970	38856692	Retroposon|SVA|SVA_D	-	chr19	38836394	38852347	HNRNPL|ENST00000388749.7	-	38836394,38837383,38837593,38838396,38838893,38840095,38840487,38841612,38843841,38844007,38845649,38845852,38847315,38852295	38836780,38837479,38837651,38838598,38839015,38840376,38840559,38841682,38843914,38844104,38845735,38846090,38847434,38852347	0.750000
testis_male_adult_54_years	chr10	27983064	27983085	27983064	-	High_confidence	124	128	822	30.522513	6.270428	chr10	27982876	27983540	LTR|ERVL|LTR50	+	chr10	27812163	27983106	ARMC4|NM_001312689.1	-	27812163,27860624,27862433,27907662,27935009,27936725,27939896,27940562,27944221,27944815,27961567,27968922,27971107,27981465,27982928	27812625,27860846,27862622,27907777,27935252,27936880,27940007,27940805,27944431,27944962,27961715,27969018,27971313,27981582,27983106	0.934307
testis_male_adult_54_years	chr8	78329236	78329237	78329236	-	High_confidence	20	20	27	1.002564	4.373661	chr8	78328808	78329591	LTR|ERV1|LTR12	-	chr8	78328273	78329246	STRG.187038.1	-	78328273	78329246	0.888889
testis_male_adult_54_years	chr4	146933972	146934018	146934004	+	High_confidence	52	52	243	9.023079	5.991557	chr4	146933924	146935245	LINE|L2|L2a	-	chr4	146934003	146934325	STRG.105570.1	+	146934003	146934325	0.790123
testis_male_adult_54_years	chr9	83272091	83272092	83272091	+	High_confidence	7	7	10	0.371320	3.169925	chr9	83272057	83273626	Retroposon|SVA|SVA_C	+	chr9	83272279	83276864	AL137847.2|ENST00000649946.1	+	83272279,83273840,83276447	83272845,83273956,83276864	0.800000
testis_male_adult_54_years	chr3	142429754	142429760	142429759	-	High_confidence	6	6	14	0.519848	3.392747	chr3	142429638	142429815	LTR|ERVL|LTR67B	+	chr3	142422634	142429774	XRN1|ENST00000477237.1	-	142422634,142422834,142423559,142425221,142425428,142426743,142429694	142422750,142422922,142423642,142425332,142425538,142426841,142429774	0.642857
testis_male_adult_54_years	chr7	20296621	20296657	20296639	+	High_confidence	5	5	13	0.482716	3.584963	chr7	20296154	20296865	DNA|TcMar-Tigger|MER44C	-	chr7	20296707	20311712	AC099342.1|ENST00000446399.5	+	20296707,20298281,20301011,20305791,20311034	20296759,20298397,20301057,20306023,20311712	0.615385
testis_male_adult_54_years	chr19	58306086	58306142	58306086	+	High_confidence	12	12	33	1.225356	4.301109	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.575758
testis_male_adult_54_years	chr5	93454617	93454618	93454617	-	RAMPAGE_only	5	5	7	0.259924	2.521641	chr5	93454400	93455152	LTR|ERVL|MER21C	+	chr5	93411032	93455949	STRG.122001.10	-	93411032,93438702,93454535	93411509,93438741,93455949	1.000000
testis_male_adult_54_years	chr11	12094016	12094038	12094016	+	High_confidence	90	90	383	14.221560	6.928070	chr11	12093951	12094241	LINE|L2|L2c	-	chr11	12094007	12204280	MICAL2|ENST00000532179.5	+	12094007,12162078,12204249	12094224,12162419,12204280	0.851175
testis_male_adult_54_years	chr9	94937624	94937646	94937625	-	High_confidence	113	157	328	12.179300	6.578596	chr9	94937586	94937765	LINE|L2|L2c	+	chr9	94927979	94937649	STRG.206684.2	-	94927979,94934772,94937598	94928863,94934944,94937649	0.753049
testis_male_adult_54_years	chr4	73144768	73144771	73144770	-	RAMPAGE_only	5	7	9	0.334188	3.169925	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	1.000000
testis_male_adult_54_years	chr18	56063098	56063101	56063100	-	High_confidence	7	9	13	0.482716	3.251629	chr18	56063040	56063261	SINE|MIR|MIR1_Amn	+	chr18	56061108	56063078	AC006305.2|ENST00000589617.1	-	56061108,56062696	56061278,56063078	0.615385
testis_male_adult_54_years	chr5	162036896	162036916	162036896	+	RAMPAGE_only	3	4	7	0.259924	2.521641	chr5	162030925	162036952	LINE|L1|L1PA2	-	chr5	162061578	162155515	GABRG2|ENST00000638660.1	+	162061578,162093827,162095494,162097637,162101234,162103888,162142163,162149107,162151729,162153092	162061909,162093979,162095562,162097858,162101317,162104026,162142316,162149313,162151753,162155515	1.000000
testis_male_adult_54_years	chr8	24524936	24524973	24524958	+	High_confidence	18	18	94	3.490409	5.939434	chr8	24524942	24525058	LTR|Gypsy?|LTR88b	-	chr8	24524709	24527066	STRG.181299.1	+	24524709,24526754	24525060,24527066	0.670213
testis_male_adult_54_years	chr19	36703659	36703682	36703680	+	High_confidence	35	44	104	3.861729	5.820884	chr19	36697923	36704066	LINE|L1|L1PA3	-	chr19	36703680	36723346	ZNF567|ENST00000588311.5	+	36703680,36712385,36712780,36718947,36723188	36703736,36712512,36712867,36720561,36723346	0.923077
testis_male_adult_54_years	chr17	42268380	42268440	42268422	-	RAMPAGE_only	16	17	66	2.450713	5.760229	chr17	42267982	42268501	DNA|TcMar-Tigger|Tigger3b	+	chr17	42217689	42276406	STAT5B|ENST00000468312.1	-	42217689,42218722,42219311,42219711,42223381,42224778,42227528,42231999,42276247	42218330,42218878,42219463,42219842,42223556,42224868,42227685,42232137,42276406	0.757576
testis_male_adult_54_years	chr10	96155901	96155926	96155923	+	High_confidence	10	10	23	0.854036	3.931838	chr10	96155915	96156029	SINE|MIR|MIR3	-	chr10	96155342	96163761	ZNF518A|ENST00000534948.2	+	96155342,96156196	96156047,96163761	1.000000
testis_male_adult_54_years	chr6	4687972	4688003	4688002	+	High_confidence	11	14	41	1.522412	4.565312	chr6	4687528	4688159	LINE|L1|L1MEh	+	chr6	4688089	4688617	STRG.135143.1	+	4688089	4688617	0.829268
testis_male_adult_54_years	chr13	23412560	23412561	23412560	-	RAMPAGE_only	5	5	7	0.259924	2.584963	chr13	23412407	23412715	SINE|Alu|AluSx1	-	chr13	23328829	23433701	SACS|ENST00000455470.6	-	23328829,23341444,23353784,23354518,23358334,23365165,23368401,23371077,23375118,23411219,23433614	23329484,23341690,23353876,23356007,23358481,23365277,23368487,23371165,23375269,23411740,23433701	0.714286
testis_male_adult_54_years	chr11	107120827	107120881	107120880	+	High_confidence	15	15	59	2.190789	5.416376	chr11	107120493	107124087	LINE|L1|L1M1	+	chr11	107120849	107128211	STRG.241875.1	+	107120849,107128171	107123115,107128211	1.000000
testis_male_adult_54_years	chr7	103353956	103353957	103353956	+	High_confidence	9	9	9	0.334188	3.169925	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.888889
testis_male_adult_54_years	chr9	66164740	66164753	66164740	-	High_confidence	4	4	9	0.334188	3.000000	chr9	66164559	66164946	LTR|ERV1|LOR1b	-	chr9	66159953	66164904	AL513478.2|ENST00000610400.1	-	66159953,66162050,66162812,66164294,66164565	66160229,66162202,66162887,66164440,66164904	0.777778
testis_male_adult_54_years	chr1	227142956	227142957	227142956	-	RAMPAGE_only	30	30	39	1.448148	4.777021	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.615385
testis_male_adult_54_years	chr17	31380091	31380093	31380091	+	High_confidence	2	4	7	0.259924	2.584963	chr17	31379988	31380178	LINE|L2|L2b	-	chr17	31380140	31382116	NF1|ENST00000488981.1	+	31380140,31381872	31380227,31382116	0.714286
testis_male_adult_54_years	chr8	27907626	27907658	27907637	-	RAMPAGE_only	17	18	58	2.153657	3.963012	chr8	27907572	27907869	SINE|Alu|AluSz	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.827586
testis_male_adult_54_years	chr9	72114591	72114605	72114591	+	High_confidence	4	4	9	0.334188	3.000000	chr9	72114564	72114671	SINE|Alu|AluYh9	-	chr9	72114594	72252223	GDA|ENST00000545168.5	+	72114594,72195499,72202570,72210686,72213885,72219478,72223119,72225676,72227942,72231113,72241151,72245147,72247405,72248271	72114833,72195588,72202742,72210774,72213991,72219506,72223227,72225784,72228040,72231181,72241298,72245278,72247433,72252223	0.666667
testis_male_adult_54_years	chr3	132627106	132627127	132627106	-	High_confidence	16	16	65	2.413581	5.495219	chr3	132627080	132627408	LTR|ERV1|MER61C	+	chr3	132579178	132627074	ACAD11|ENST00000487024.1	-	132579178,132603228,132605097,132618633,132619467,132626690	132579558,132603327,132605205,132618772,132619545,132627074	0.969231
testis_male_adult_54_years	chr9	20658568	20658608	20658607	+	High_confidence	3	4	12	0.445584	3.459432	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.666667
testis_male_adult_54_years	chr12	69594606	69594623	69594622	+	RAMPAGE_only	3	3	8	0.297056	3.000000	chr12	69594574	69594863	SINE|Alu|AluJr4	+	chr12	69599713	69601570	CCT2|ENST00000550653.1	+	69599713,69601294	69600004,69601570	0.500000
testis_male_adult_54_years	chr19	44397012	44397013	44397012	-	RAMPAGE_only	6	7	9	0.334188	2.641604	chr19	44396851	44396991	DNA|hAT-Charlie|Charlie10	-	chr19	44385928	44401575	ZNF285|ENST00000591679.5	-	44385928,44392339,44394519,44397198,44401567	44388102,44392466,44394540,44397256,44401575	0.888889
testis_male_adult_54_years	chr4	158200459	158200460	158200459	-	High_confidence	26	28	28	1.039696	4.469670	chr4	158200071	158200486	LTR|ERVL-MaLR|MSTB1	+	chr4	158199104	158200442	AC098679.1|ENST00000513067.1	-	158199104,158200323	158199350,158200442	0.928571
testis_male_adult_54_years	chr14	29650490	29650536	29650535	-	High_confidence	2	2	8	0.297056	2.750000	chr14	29649465	29650532	LTR|ERV1|HERV3-int	-	chr14	29636442	29650520	PRKD1|ENST00000551644.5	-	29636442,29638488,29638693,29650301	29636494,29638566,29638904,29650520	0.625000
testis_male_adult_54_years	chr1	221714465	221714492	221714465	-	High_confidence	6	6	35	1.299620	4.983788	chr1	221714228	221714848	LTR|ERV1|LTR9	+	chr1	221702426	221714687	STRG.25495.6	-	221702426,221706094,221714176	221702677,221706466,221714687	0.771429
testis_male_adult_54_years	chr13	46187427	46187443	46187442	-	RAMPAGE_only	6	6	16	0.594112	4.000000	chr13	46186832	46188146	LINE|L1|HAL1	-	chr13	46125922	46182324	LCP1|NM_002298.4	-	46125922,46130813,46134126,46142291,46143289,46144441,46146907,46148351,46150935,46152779,46154804,46156437,46158521,46158825,46159598,46182110	46127723,46130938,46134250,46142425,46143404,46144520,46147103,46148447,46151078,46152945,46154886,46156570,46158651,46158989,46159686,46182324	0.625000
testis_male_adult_54_years	chr7	150041397	150041398	150041397	+	High_confidence	7	7	8	0.297056	2.807355	chr7	150040867	150041464	LTR|ERV1|HERVE-int	-	chr7	150041362	150045092	AC092666.1|ENST00000493400.1	+	150041362,150044749	150041461,150045092	0.875000
testis_male_adult_54_years	chr20	50957371	50957406	50957371	-	RAMPAGE_only	2	2	10	0.371320	2.947703	chr20	50957178	50957429	LINE|L1|L1ME4b	+	chr20	50934944	50958521	DPM1|ENST00000371584.8	-	50934944,50936147,50940864,50941104,50942030,50945736,50945846,50948628,50955185,50958362	50935236,50936262,50940933,50941209,50942126,50945762,50945923,50948662,50955285,50958521	0.600000
testis_male_adult_54_years	chr9	35041099	35041135	35041134	+	High_confidence	18	18	58	2.153657	5.293242	chr9	35040834	35041419	LTR|ERV1|LTR10C	-	chr9	35041141	35043140	C9orf131|ENST00000534880.1	+	35041141,35042860	35041440,35043140	0.672414
testis_male_adult_54_years	chr3	9216663	9216683	9216680	+	High_confidence	88	89	336	12.476356	6.489141	chr3	9216588	9216732	SINE|MIR|MIRc	-	chr3	9216561	9218488	STRG.62565.1	+	9216561,9217730	9216989,9218488	0.812500
testis_male_adult_54_years	chr2	156618417	156618459	156618417	+	RAMPAGE_only	2	2	9	0.334188	2.947703	chr2	156617166	156618624	LTR|ERV1|LTR12C	-	chr2	156655223	156695659	LINC01958|ENST00000637749.1	+	156655223,156659372,156666582,156693178,156694010	156655348,156659413,156666671,156693215,156695659	0.555556
testis_male_adult_54_years	chr15	82160070	82160091	82160090	-	High_confidence	16	16	68	2.524977	5.434323	chr15	82159991	82160452	LTR|ERVL-MaLR|MLT1F	+	chr15	82152156	82160070	EFL1|ENST00000561340.1	-	82152156,82157712,82159931	82152423,82157860,82160070	0.514706
testis_male_adult_54_years	chr15	78879350	78879355	78879350	+	RAMPAGE_only	3	3	8	0.297056	2.750000	chr15	78879246	78879514	SINE|Alu|AluSg7	-	chr15	78878239	78893590	MORF4L1|ENST00000559751.1	+	78878239,78880511,78884969,78886140,78887268,78890988,78891483,78892211,78893538	78878259,78880579,78885083,78886227,78887349,78891014,78891572,78892313,78893590	1.000000
testis_male_adult_54_years	chr12	28305219	28305220	28305219	+	RAMPAGE_only	12	13	17	0.631244	3.690117	chr12	28305153	28305264	LINE|L2|L2a	+	chr12	28302633	28452636	STRG.250445.9	+	28302633,28304625,28305648,28306741,28307644,28362437,28391303,28450160,28450349,28452477	28302811,28304711,28305806,28306945,28307749,28362515,28391411,28450253,28450418,28452636	1.000000
testis_male_adult_54_years	chr10	65811647	65811648	65811647	-	High_confidence	28	28	33	1.225356	4.202820	chr10	65811231	65812586	LTR|ERV1|LTR12E	-	chr10	65782982	65811833	STRG.219830.1	-	65782982,65786836,65811347	65785189,65786976,65811833	0.878788
testis_male_adult_54_years	chr7	36065834	36065835	36065834	-	High_confidence	132	133	154	5.718330	5.915715	chr7	36065222	36066084	LTR|ERV1|LTR12D	-	chr7	36065102	36065857	STRG.162343.1	-	36065102	36065857	0.974026
testis_male_adult_54_years	chr5	36213174	36213194	36213177	-	High_confidence	72	72	240	8.911683	6.691377	chr5	36212793	36213310	LTR|ERVL-MaLR|MLT1F	+	chr5	36204815	36213177	STRG.116300.10	-	36204815,36211843,36212263	36207265,36211922,36213177	0.741667
testis_male_adult_54_years	chr2	78542038	78542064	78542038	-	High_confidence	31	32	82	3.044825	5.287570	chr2	78541256	78543178	LINE|L1|L1PBa1	+	chr2	77998049	78542048	STRG.40889.1	-	77998049,78025326,78156433,78485793,78541571	77998117,78025424,78156589,78485852,78542048	0.792683
testis_male_adult_54_years	chr5	120882674	120882693	120882692	-	High_confidence	15	15	53	1.967997	5.402175	chr5	120882298	120882779	LTR|ERVL|MER70A	-	chr5	120871345	120882679	STRG.126321.1	-	120871345	120882679	0.962264
testis_male_adult_54_years	chr12	7751619	7751620	7751619	-	High_confidence	31	42	44	1.633808	5.232159	chr12	7751374	7752625	LTR|ERV1|LTR12E	-	chr12	7751009	7751607	STRG.247753.5	-	7751009	7751607	0.545455
testis_male_adult_54_years	chr1	15588519	15588520	15588519	-	High_confidence	111	111	141	5.235614	5.638958	chr1	15587991	15588747	LTR|ERV1|LTR12D	-	chr1	15583091	15588507	STRG.2087.2	-	15583091,15587979	15583395,15588507	0.978723
testis_male_adult_54_years	chr3	156042132	156042133	156042132	+	RAMPAGE_only	313	313	319	11.845112	6.337555	chr3	156041137	156042550	LTR|ERV1|LTR12C	+	chr3	156041119	156047838	STRG.81007.6	+	156041119	156047838	0.968652
testis_male_adult_54_years	chr7	72412340	72412341	72412340	-	High_confidence	403	418	492	18.268949	7.579674	chr7	72412058	72412621	LTR|ERV1|LTR12_	-	chr7	71779490	72412373	CALN1|ENST00000395275.6	-	71779490,71810335,72023656,72106150,72278685,72403250,72412057	71787902,71810492,72023769,72106294,72278810,72403442,72412373	0.615854
testis_male_adult_54_years	chrX	136922340	136922341	136922340	+	High_confidence	264	266	273	10.137039	5.958766	chrX	136921248	136922756	LTR|ERV1|LTR12C	+	chrX	136922327	136928117	STRG.369242.2	+	136922327,136925246	136922776,136928117	0.871795
testis_male_adult_54_years	chr6	44551612	44551613	44551612	+	High_confidence	10	10	12	0.445584	3.459432	chr6	44551652	44551839	SINE|MIR|MIR3	+	chr6	44551576	44553281	AL136140.2|ENST00000624717.1	+	44551576	44553281	0.833333
testis_male_adult_54_years	chr16	87292588	87292614	87292604	+	High_confidence	12	12	43	1.596676	4.834184	chr16	87292123	87292641	LTR|ERVL-MaLR|MLT1F	-	chr16	87292760	87293179	STRG.311274.1	+	87292760	87293179	0.651163
testis_male_adult_54_years	chr8	86822483	86822484	86822483	+	RAMPAGE_only	35	40	45	1.670940	5.201841	chr8	86822298	86822668	LTR|ERVL-MaLR|THE1D	+	chr8	86866444	87382859	CNBD1|ENST00000518476.5	+	86866444,86887541,86905080,86939595,87205992,87236918,87284677,87286538,87351684,87353635,87382619	86866583,86887611,86905194,86939754,87206138,87237112,87284815,87286671,87351794,87353786,87382859	0.555556
testis_male_adult_54_years	chr1	51801067	51801108	51801107	-	High_confidence	46	47	169	6.275310	6.147558	chr1	51800859	51801103	SINE|Alu|AluJr	-	chr1	51794471	51801094	NRDC|ENST00000497358.1	-	51794471,51794822,51798248,51800555,51800856	51794610,51794854,51798411,51800683,51801094	0.899408
testis_male_adult_54_years	chr17	522967	523000	522967	-	High_confidence	7	7	23	0.854036	4.349649	chr17	522785	522928	SINE|MIR|MIRb	-	chr17	519118	522995	VPS53|ENST00000541903.6	-	519118,519825,521600,522924	519298,519930,521738,522995	0.782609
testis_male_adult_54_years	chr15	36702042	36702083	36702067	+	High_confidence	27	35	123	4.567237	5.833072	chr15	36701895	36702134	DNA|DNA|MER126	+	chr15	36702049	36808457	C15orf41|ENST00000566932.5	+	36702049,36709222,36709855,36790207,36808323	36702124,36709288,36709961,36790358,36808457	0.617886
testis_male_adult_54_years	chr8	57214089	57214159	57214141	+	RAMPAGE_only	13	14	42	1.559544	4.763295	chr8	57213634	57214467	LTR|ERV1|MER50-int	-	chr8	57193619	57220236	STRG.184749.4	+	57193619,57193884,57210733,57212877,57215108,57218269,57220110	57193689,57206354,57212583,57214932,57217976,57219623,57220236	0.976190
testis_male_adult_54_years	chr7	48000229	48000252	48000229	-	High_confidence	5	5	19	0.705508	3.947703	chr7	48000133	48000438	SINE|Alu|AluSx	-	chr7	47987147	48000181	SUN3|ENST00000473723.5	-	47987147,47988787,47991009,47994314,47996030,48000127	47987449,47988880,47991045,47994482,47996146,48000181	0.789474
testis_male_adult_54_years	chr19	40169694	40169695	40169694	-	High_confidence	588	592	611	22.687659	5.460182	chr19	40169279	40170706	LTR|ERV1|LTR12C	-	chr19	40167138	40169707	STRG.336494.1	-	40167138	40169707	0.959083
testis_male_adult_54_years	chr8	112808426	112808445	112808430	-	RAMPAGE_only	3	4	12	0.445584	3.459432	chr8	112808347	112808904	LTR|ERV1|LTR6A	+	chr8	112222931	112690042	CSMD3|ENST00000339701.7	-	112222931,112228755,112231544,112234364,112237189,112241719,112244393,112247019,112254252,112255253,112263638,112265410,112281173,112287063,112289364,112291509,112292536,112295832,112301792,112304720,112306006,112310977,112313905,112314428,112318836,112319900,112335328,112336651,112337542,112341476,112346096,112351174,112352415,112380351,112383566,112390663,112406523,112472590,112492488,112503789,112506690,112517033,112550670,112552593,112556762,112573500,112587065,112636816,112638695,112645108,112650160,112656153,112666276,112682441,112685405,112689867	112224930,112228891,112231632,112234477,112237348,112241785,112244573,112247131,112254326,112255427,112263812,112265590,112281350,112287246,112289538,112291695,112292710,112296006,112301966,112304915,112306192,112311166,112314052,112314617,112318950,112319981,112335474,112336829,112337731,112341686,112346213,112351244,112352534,112380456,112383663,112390788,112406727,112472707,112492683,112503977,112506829,112517225,112550873,112552720,112556954,112573657,112587235,112637005,112638911,112645225,112650349,112656341,112666415,112682636,112685732,112690042	0.833333
testis_male_adult_54_years	chr17	17686056	17686074	17686056	+	RAMPAGE_only	2	2	8	0.297056	2.807355	chr17	17685599	17686175	LINE|L2|L2b	+	chr17	17682494	17793143	RAI1|ENST00000471135.2	+	17682494,17683545,17724027,17792932	17682563,17683703,17724159,17793143	0.875000
testis_male_adult_54_years	chr5	143054199	143054218	143054199	+	High_confidence	7	7	12	0.445584	3.459432	chr5	143053748	143054428	LINE|L1|L1ME4c	-	chr5	143054438	143223194	ARHGAP26|ENST00000418236.5	+	143054438,143056027,143057641,143120987,143133966,143147230,143213996,143222357	143054526,143056086,143057747,143121147,143134105,143147381,143214088,143223194	0.666667
testis_male_adult_54_years	chr1	240763348	240763382	240763381	+	High_confidence	54	54	107	3.973125	5.712366	chr1	240762307	240763695	LTR|ERV1|LTR12C	+	chr1	240763381	240776044	AL365184.1|ENST00000644500.1	+	240763381,240765437,240768151,240770765,240771082,240774525,240775804	240763862,240765599,240768304,240770902,240771183,240774600,240776044	0.971963
testis_male_adult_54_years	chr7	99979845	99979878	99979854	-	RAMPAGE_only	4	4	12	0.445584	3.418296	chr7	99979751	99980248	LTR|ERVL-MaLR|MLT1N2	-	chr7	99966729	99976157	AZGP1|ENST00000292401.8	-	99966729,99968154,99971745,99975944	99967286,99968430,99972006,99976157	0.666667
testis_male_adult_54_years	chr10	84572171	84572172	84572171	+	High_confidence	45	45	46	1.708073	5.091853	chr10	84571017	84572588	LTR|ERV1|LTR12C	+	chr10	84572188	84572760	STRG.222339.1	+	84572188	84572760	0.869565
testis_male_adult_54_years	chr12	109179264	109179282	109179281	+	RAMPAGE_only	5	7	14	0.519848	3.664498	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109175976	109266555	STRG.261134.3	+	109175976,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109252045,109253014,109254213,109256139,109258267,109258972,109260479,109262356,109264231,109265109,109265388,109266235	109176040,109176263,109179297,109180087,109185740,109188162,109191763,109192961,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260657,109262469,109264386,109265280,109265525,109266555	1.000000
testis_male_adult_54_years	chr8	40369989	40370003	40370002	+	High_confidence	7	7	12	0.445584	3.418296	chr8	40369637	40370169	LINE|L1|L1MB5	+	chr8	40370027	40401848	AC105999.1|ENST00000518722.1	+	40370027,40370755,40401014,40401668	40370096,40370920,40401073,40401848	0.500000
testis_male_adult_54_years	chr8	81844207	81844208	81844207	+	High_confidence	43	43	57	2.116525	5.367634	chr8	81843895	81844359	LTR|ERV1|MER51A	+	chr8	81843668	81875008	STRG.187778.1	+	81843668	81875008	0.912281
testis_male_adult_54_years	chr12	18714804	18714805	18714804	-	High_confidence	6	6	7	0.259924	2.584963	chr12	18714673	18714885	DNA|hAT-Charlie|MER20	+	chr12	18683181	18714771	PLCZ1|ENST00000538330.5	-	18683181,18684129,18688088,18694909,18696149,18699793,18701500,18705165,18712841,18713736,18714655	18683324,18684279,18688218,18695079,18696266,18699950,18701776,18705284,18712986,18713825,18714771	0.714286
testis_male_adult_54_years	chr5	58068703	58068704	58068703	-	High_confidence	42	46	51	1.893733	5.268758	chr5	58068285	58069664	LTR|ERV1|LTR12C	-	chr5	58068008	58068691	STRG.117879.1	-	58068008	58068691	0.666667
testis_male_adult_54_years	chr14	39474727	39474761	39474760	-	RAMPAGE_only	22	22	48	1.782337	5.123426	chr14	39474624	39475115	LTR|ERVL-MaLR|MLT1G1	+	chr14	39470273	39470652	STRG.280116.1	-	39470273	39470652	0.583333
testis_male_adult_54_years	chr11	57568212	57568213	57568212	-	High_confidence	5	5	7	0.259924	2.584963	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	0.857143
testis_male_adult_54_years	chr2	44167387	44167429	44167426	-	High_confidence	91	94	438	16.263821	5.768870	chr2	44167377	44167621	LINE|L2|L2a	+	chr2	44165556	44167426	STRG.34862.2	-	44165556,44167297	44166875,44167426	0.956621
testis_male_adult_54_years	chr6	161470976	161471002	161470976	+	High_confidence	3	3	13	0.482716	3.700440	chr6	161470507	161471149	DNA|hAT-Tip100|MER115	+	chr6	161470976	161484045	LOC105378098|NR_134595.1	+	161470976,161479473,161479861,161483707	161471019,161479684,161479964,161484045	0.615385
testis_male_adult_54_years	chr15	33523239	33523259	33523258	+	High_confidence	5	5	9	0.334188	2.947703	chr15	33523024	33523550	LTR|ERV1|LTR12_	+	chr15	33522965	33523962	STRG.291800.1	+	33522965	33523962	0.888889
testis_male_adult_54_years	chr13	63740044	63740081	63740044	+	RAMPAGE_only	8	9	22	0.816904	3.356492	chr13	63739649	63740246	LTR|ERV1|HERVE-int	-	chr13	63738110	63742569	STRG.270366.4	+	63738110,63740765,63742351	63740243,63740909,63742569	1.000000
testis_male_adult_54_years	chr6	64218237	64218260	64218251	-	High_confidence	4	4	17	0.631244	4.000000	chr6	64218042	64218686	LTR|ERV1|MER67B	+	chr6	64215179	64218305	STRG.143423.1	-	64215179	64218305	0.647059
testis_male_adult_54_years	chr2	9287025	9287026	9287025	+	RAMPAGE_only	12	12	14	0.519848	3.546594	chr2	9286921	9287156	SINE|MIR|MIR	-	chr2	9323120	9358838	ASAP2|ENST00000641030.1	+	9323120,9327825,9334737,9335092,9336035,9344531,9344730,9350807,9356046,9356178,9358755	9323250,9327911,9334813,9335179,9336044,9344635,9344800,9350895,9356095,9356345,9358838	0.500000
testis_male_adult_54_years	chr9	73259279	73259306	73259292	+	RAMPAGE_only	21	38	119	4.418709	6.342378	chr9	73259106	73259490	LTR|ERVL-MaLR|MSTA	+	chr9	73362344	73364149	STRG.203745.1	+	73362344,73363557	73362888,73364149	0.521008
testis_male_adult_54_years	chr14	34894838	34894883	34894878	-	High_confidence	15	16	68	2.524977	5.265167	chr14	34894826	34895089	SINE|Alu|AluSc8	+	chr14	34810941	34895145	STRG.279582.7	-	34810941,34826012,34862043,34874491,34894808	34811036,34826156,34862322,34874662,34895145	0.985294
testis_male_adult_54_years	chr1	39625170	39625188	39625187	-	RAMPAGE_only	3	3	8	0.297056	2.521641	chr1	39625119	39625264	DNA|hAT|MamRep38	+	chr1	39623430	39639676	HEYL|NM_014571.3	-	39623430,39630226,39631495,39632648,39639545	39627180,39630308,39631579,39632715,39639676	0.750000
testis_male_adult_54_years	chr4	47790247	47790282	47790247	-	High_confidence	11	11	36	1.336752	4.725481	chr4	47790242	47790586	LTR|ERV1|MER61A	+	chr4	47595481	47790260	CORIN|ENST00000508498.5	-	47595481,47600213,47603396,47623570,47623898,47626404,47641919,47643145,47645080,47653552,47661710,47665031,47674392,47677937,47680140,47683730,47692969,47744401,47763378,47786724,47790220	47595903,47600347,47603668,47623745,47623948,47626521,47642049,47643256,47645194,47653660,47661856,47665263,47674500,47678054,47680251,47683838,47693083,47744583,47763586,47786925,47790260	0.916667
testis_male_adult_54_years	chr1	239629109	239629141	239629121	+	High_confidence	4	4	14	0.519848	2.931209	chr1	239623498	239629523	LINE|L1|L1HS	-	chr1	239629072	239915452	CHRM3|ENST00000255380.8	+	239629072,239632223,239678185,239827251,239907432	239629539,239632286,239678288,239827378,239915452	0.785714
testis_male_adult_54_years	chr9	81911611	81911637	81911611	-	RAMPAGE_only	3	3	9	0.334188	2.947703	chr9	81910990	81911656	LTR|ERV1|MER57-int	-	chr9	81907689	81930150	STRG.204892.6	-	81907689,81911428	81908785,81930150	0.888889
testis_male_adult_54_years	chr16	27816718	27816731	27816718	+	High_confidence	5	5	13	0.482716	3.251629	chr16	27816597	27816724	DNA|hAT-Blackjack|MER63A	-	chr16	27816734	27817102	STRG.304935.1	+	27816734	27817102	0.615385
testis_male_adult_54_years	chr7	48708363	48708383	48708382	+	High_confidence	4	4	9	0.334188	3.169925	chr7	48708130	48708556	LTR|ERVL|MER70B	-	chr7	48708439	48711582	STRG.163853.2	+	48708439,48711156	48708914,48711582	0.888889
testis_male_adult_54_years	chr3	12825723	12825729	12825723	+	RAMPAGE_only	7	7	14	0.519848	3.180833	chr3	12825723	12825953	SINE|MIR|MIR	+	chr3	12827445	12871916	CAND2|ENST00000454887.1	+	12827445,12831464,12850658,12871735	12827604,12831572,12850860,12871916	0.714286
testis_male_adult_54_years	chr7	98870593	98870601	98870600	-	High_confidence	3	3	8	0.297056	2.750000	chr7	98870597	98870897	SINE|Alu|AluSx1	-	chr7	98846487	98870050	TMEM130|NM_152913.2	-	98846487,98848582,98851420,98855239,98856016,98860178,98863094,98869776	98848208,98848695,98851623,98855324,98856183,98860338,98863400,98870050	0.750000
testis_male_adult_54_years	chr12	11486679	11486692	11486691	-	High_confidence	20	20	32	1.188224	4.453881	chr12	11486291	11486668	LTR|ERV1|MER110A	-	chr12	11399380	11486678	AC078950.1|ENST00000538349.5	-	11399380,11399849,11431481,11486048,11486563	11399477,11400003,11431562,11486151,11486678	0.781250
testis_male_adult_54_years	chr7	103274559	103274683	103274682	-	RAMPAGE_only	7	9	63	2.339317	5.249116	chr7	103274079	103275487	LTR|ERV1|LTR12C	-	chr7	103175132	103280219	DPY19L2P2|ENST00000439473.5	-	103175132,103184001,103185437,103195439,103197186,103198594,103210266,103212160,103214000,103216462,103225104,103233799,103234648,103237755,103238802,103240561,103242988,103254781,103257603,103271731,103274069,103277613,103279832	103175411,103184127,103185537,103195614,103197306,103198619,103210313,103212232,103214102,103216543,103225164,103233886,103234726,103237855,103238871,103240653,103243046,103254875,103257724,103271869,103275627,103277638,103280219	0.968254
testis_male_adult_54_years	chr2	179235830	179235896	179235830	-	High_confidence	12	12	49	1.819469	4.979620	chr2	179235792	179236139	LINE|L2|L2b	+	chr2	179151322	179236307	STRG.52202.6	-	179151322,179172119,179176447,179183079,179191786,179235686	179151391,179172233,179176538,179183188,179191866,179236307	0.755102
testis_male_adult_54_years	chrX	147332150	147332153	147332152	-	RAMPAGE_only	167	263	339	12.587752	6.096846	chrX	147331839	147332334	LINE|L1|L1M7	+	chrX	147305378	147334586	STRG.370678.8	-	147305378	147334586	0.988201
testis_male_adult_54_years	chr1	209858125	209858136	209858135	-	High_confidence	19	19	36	1.336752	4.781036	chr1	209857856	209859201	LTR|ERV1|LTR12C	-	chr1	209857549	209858151	STRG.23974.1	-	209857549	209858151	0.861111
testis_male_adult_54_years	chr4	105712506	105712527	105712526	+	High_confidence	17	17	76	2.822033	5.009257	chr4	105712168	105712985	LINE|L2|L2a	-	chr4	105712609	105712981	STRG.99643.1	+	105712609	105712981	0.881579
testis_male_adult_54_years	chr4	55383617	55383618	55383617	+	High_confidence	9	9	13	0.482716	3.584963	chr4	55383604	55383894	SINE|Alu|AluJb	+	chr4	55383599	55387303	STRG.94691.1	+	55383599,55385216,55386342	55383793,55385303,55387303	0.692308
testis_male_adult_54_years	chr20	47990070	47990103	47990084	-	High_confidence	129	130	305	11.325263	6.989612	chr20	47989885	47990095	DNA|hAT-Charlie|MER20	-	chr20	47980092	47990117	LINC01522|NR_110027.1	-	47980092,47988606,47990014	47980778,47988742,47990117	0.901639
testis_male_adult_54_years	chr4	184537538	184537596	184537549	-	High_confidence	22	27	151	5.606934	5.847768	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184536530	184537591	STRG.110003.1	-	184536530	184537591	0.741722
testis_male_adult_54_years	chr6	20319345	20319346	20319345	-	High_confidence	6	7	9	0.334188	2.750000	chr6	20318737	20320042	LTR|ERV1|LTR12C	+	chr6	20318424	20319338	STRG.137461.1	-	20318424	20319338	0.777778
testis_male_adult_54_years	chr2	217881895	217881901	217881898	-	RAMPAGE_only	5	5	10	0.371320	3.169925	chr2	217881825	217881996	LINE|CR1|Plat_L3	-	chr2	217848355	217885880	TNS1|ENST00000479185.1	-	217848355,217880897,217885034,217885743	217849087,217882411,217885164,217885880	0.900000
testis_male_adult_54_years	chr16	80556478	80556488	80556478	-	RAMPAGE_only	2	2	6	0.222792	2.584963	chr16	80556333	80556717	LTR|ERVL-MaLR|MLT1O	+	chr16	80553385	80553738	STRG.310475.1	-	80553385	80553738	0.500000
testis_male_adult_54_years	chr12	71772169	71772174	71772169	+	RAMPAGE_only	350	360	819	30.411117	6.596704	chr12	71772015	71772475	LTR|ERVL-MaLR|MLT1H	-	chr12	71770609	71785689	STRG.256000.3	+	71770609,71773958,71782030,71782569,71785530	71772228,71774022,71782085,71782658,71785689	0.853480
testis_male_adult_54_years	chr13	57286676	57286706	57286705	+	High_confidence	8	8	43	1.596676	5.054172	chr13	57285459	57287161	LTR|ERV1|LTR12C	-	chr13	57286538	57408294	STRG.269582.1	+	57286538,57408217	57287202,57408294	0.534884
testis_male_adult_54_years	chr13	20247707	20247719	20247707	-	High_confidence	2	2	7	0.259924	2.807355	chr13	20247702	20247872	LTR|ERVL?|LTR87	+	chr13	20246813	20247276	STRG.264658.1	-	20246813	20247276	0.571429
testis_male_adult_54_years	chr2	175594162	175594169	175594162	+	High_confidence	5	5	10	0.371320	3.321928	chr2	175588546	175594563	LINE|L1|L1PA2	-	chr2	175594250	175595424	STRG.51615.1	+	175594250	175595424	0.900000
testis_male_adult_54_years	chr5	131019883	131019884	131019883	+	RAMPAGE_only	17	17	25	0.928300	3.863465	chr5	131014663	131020611	LINE|L1|L1PB1	-	chr5	131023796	131036521	STRG.127263.1	+	131023796,131028237,131036319	131023856,131028383,131036521	0.720000
testis_male_adult_54_years	chr6	18196888	18196894	18196888	+	RAMPAGE_only	3	3	8	0.297056	2.521641	chr6	18196594	18196911	DNA|TcMar-Tigger|MER2	+	chr6	18155451	18223853	KDM1B|ENST00000297792.9	+	18155451,18155882,18159882,18161326,18162834,18166266,18171362,18185771,18197056,18197586,18200438,18207397,18208131,18212487,18213655,18215006,18217732,18221908	18155571,18155926,18159982,18161454,18162924,18166378,18171479,18185810,18197233,18197661,18200576,18207529,18208206,18212604,18213781,18215129,18217885,18223853	0.500000
testis_male_adult_54_years	chr11	10586684	10586707	10586684	-	RAMPAGE_only	8	10	24	0.891168	4.175736	chr11	10586416	10586717	SINE|Alu|AluSz	-	chr11	10573090	10652185	MRVI1|ENST00000424001.5	-	10573090,10580454,10581866,10591547,10593491,10594145,10600917,10603119,10604404,10606741,10609727,10623777,10625965,10627715,10627972,10628750,10629537,10631990,10652024	10576575,10580589,10581986,10591612,10593599,10594195,10601059,10603251,10604545,10606772,10609851,10623856,10626583,10627763,10628025,10628828,10629711,10632061,10652185	0.958333
testis_male_adult_54_years	chr12	30051483	30051498	30051497	-	RAMPAGE_only	7	7	16	0.594112	3.500000	chr12	30051160	30051482	DNA|hAT-Charlie|MER58B	-	chr12	29928720	29943040	STRG.250604.1	-	29928720,29942923	29928890,29943040	0.625000
testis_male_adult_54_years	chr7	153413933	153413934	153413933	-	High_confidence	5	5	7	0.259924	2.807355	chr7	153413807	153414153	LTR|ERV1|HERV-Fc1_LTR1	-	chr7	153411233	153413963	LINC01287|ENST00000416982.1	-	153411233,153411581	153411475,153413963	0.857143
testis_male_adult_54_years	chr2	1041935	1041952	1041951	-	High_confidence	10	10	36	1.336752	4.680768	chr2	1041838	1041981	LINE|L1|L1M5	-	chr2	1041183	1041914	STRG.29355.1	-	1041183	1041914	0.916667
testis_male_adult_54_years	chr4	170979143	170979166	170979158	+	High_confidence	6	6	22	0.816904	3.884184	chr4	170977400	170979316	LINE|L1|L1PB1	-	chr4	170979833	170994818	STRG.108030.1	+	170979833,170979925,170993736	170979884,170980128,170994818	0.909091
testis_male_adult_54_years	chr2	70983850	70983895	70983861	-	High_confidence	10	10	60	2.227921	5.022119	chr2	70983824	70983877	LTR|ERVL-MaLR|MLT1L	-	chr2	70983191	70984111	STRG.40040.11	-	70983191	70984111	0.800000
testis_male_adult_54_years	chr13	114285928	114285948	114285947	+	High_confidence	5	5	9	0.334188	2.947703	chr13	114285920	114286050	LINE|L1|L1ME1	-	chr13	114285974	114291718	UPF3A|ENST00000481131.5	+	114285974,114286518,114291488,114291633	114286400,114286629,114291544,114291718	0.777778
testis_male_adult_54_years	chr10	129070296	129070297	129070296	-	High_confidence	18	18	18	0.668376	4.058814	chr10	129070013	129071916	LTR|ERV1|LTR12C	-	chr10	129069676	129070119	STRG.227545.1	-	129069676	129070119	0.777778
testis_male_adult_54_years	chr14	100291506	100291507	100291506	-	RAMPAGE_only	9	9	11	0.408452	3.277613	chr14	100291489	100291554	SINE|MIR|MIR1_Amn	-	chr14	100291115	100296545	SLC25A29|ENST00000554912.1	-	100291115,100293293	100293032,100296545	0.727273
testis_male_adult_54_years	chr2	115757003	115757004	115757003	-	High_confidence	7	7	11	0.408452	3.277613	chr2	115756705	115757101	LTR|ERVL-MaLR|MSTD	-	chr2	115756447	115756778	STRG.44638.1	-	115756447	115756778	0.545455
testis_male_adult_54_years	chr7	56489006	56489007	56489006	+	RAMPAGE_only	11	11	11	0.408452	3.277613	chr7	56488890	56489186	LINE|L1|L1MEc	-	chr7	56483369	56497285	STRG.164744.1	+	56483369,56487760,56494693	56487037,56494538,56497285	1.000000
testis_male_adult_54_years	chr1	87528882	87528931	87528930	-	High_confidence	69	79	234	8.688891	5.108648	chr1	87528466	87529496	LTR|ERV1|LTR12D	-	chr1	87504196	87528905	STRG.11718.1	-	87504196,87528462	87504389,87528905	0.965812
testis_male_adult_54_years	chr7	37279734	37279747	37279734	-	RAMPAGE_only	3	3	9	0.334188	2.500000	chr7	37279323	37279941	LINE|L1|L1PB1	+	chr7	37233104	37342763	ELMO1|ENST00000455119.5	-	37233104,37259180,37271831,37314849,37315919,37342612	37233194,37259350,37271882,37314922,37315960,37342763	0.666667
testis_male_adult_54_years	chr21	46142704	46142708	46142707	-	High_confidence	718	725	1206	44.781205	6.591561	chr21	46142201	46143045	LTR|ERV1|LTR12	-	chr21	46136261	46142741	FTCD|ENST00000460011.5	-	46136261,46136914,46137238,46138507,46142108	46136494,46137073,46137334,46138646,46142741	0.895522
testis_male_adult_54_years	chrX	119895857	119895895	119895894	+	High_confidence	102	155	488	18.120421	6.806898	chrX	119895758	119895911	SINE|MIR|MIR	+	chrX	119895836	119920716	AKAP14|ENST00000371431.7	+	119895836,119896154,119903213,119903494,119914698,119919910,119920507	119895987,119896267,119903392,119903586,119914878,119919963,119920716	0.741803
testis_male_adult_54_years	chr8	70297097	70297115	70297114	-	RAMPAGE_only	7	8	15	0.556980	3.182006	chr8	70297092	70297231	LINE|L2|L2b	+	chr8	70112069	70402079	NCOA2|ENST00000518287.6	-	70112069,70123803,70124687,70126812,70128432,70128701,70131836,70138202,70141178,70148272,70155970,70159504,70162710,70163464,70166565,70170201,70174755,70213902,70216659,70296743,70401813	70113643,70124082,70124865,70127047,70128510,70128980,70132002,70138332,70141399,70148483,70157240,70159652,70162854,70163566,70166754,70170379,70174859,70214075,70216764,70296800,70402079	0.933333
testis_male_adult_54_years	chr4	79585145	79585147	79585145	+	RAMPAGE_only	3	5	7	0.259924	2.584963	chr4	79585003	79585349	LTR|ERVL-MaLR|MLT1L	-	chr4	79596541	79597173	AC092542.1|ENST00000513155.1	+	79596541,79596876	79596599,79597173	0.571429
testis_male_adult_54_years	chr2	208119108	208119142	208119108	+	High_confidence	10	10	27	1.002564	4.606739	chr2	208119142	208119295	LTR|ERVL-MaLR|MLT1L	+	chr2	208119128	208156762	LOC100507443|NR_038437.1	+	208119128,208137055,208156546	208119225,208137179,208156762	0.740741
testis_male_adult_54_years	chr6	9041152	9041153	9041152	-	High_confidence	16	16	17	0.631244	3.750000	chr6	9040590	9042044	LTR|ERV1|LTR12C	+	chr6	9040385	9041143	STRG.135927.1	-	9040385	9041143	0.882353
testis_male_adult_54_years	chr2	108451086	108451087	108451086	+	RAMPAGE_only	5	6	8	0.297056	2.807355	chr2	108451073	108451151	LINE|RTE-BovB|MamRTE1	-	chr2	108449883	108472899	GCC2|ENST00000409896.1	+	108449883,108451027,108452398,108468979,108469650,108472826	108449994,108451112,108452466,108469084,108472116,108472899	0.875000
testis_male_adult_54_years	chr3	42601913	42601914	42601913	+	RAMPAGE_only	8	9	10	0.371320	2.947703	chr3	42601842	42602117	LINE|L2|L2a	-	chr3	42600717	42603056	NKTR|ENST00000459950.1	+	42600717,42600983	42600778,42603056	0.800000
testis_male_adult_54_years	chr1	10318420	10318460	10318459	+	RAMPAGE_only	8	9	23	0.854036	3.936180	chr1	10318439	10318730	SINE|Alu|AluSq2	+	chr1	10282449	10361824	STRG.1307.4	+	10282449,10291081,10292046,10295085,10295659,10296581,10296896,10297173,10320042,10321708,10323883,10324757,10334519,10336656,10337073,10337370,10339768,10342049,10343231,10345844,10347760,10348648,10352630,10360928,10361691	10282533,10291161,10292122,10295165,10295766,10296665,10297077,10297246,10320136,10321857,10324062,10324895,10334638,10336742,10337203,10337533,10339859,10342168,10343287,10345953,10347827,10348733,10352736,10361043,10361824	0.739130
testis_male_adult_54_years	chr2	107826794	107826831	107826820	-	High_confidence	54	56	344	12.773412	6.835634	chr2	107826465	107826780	SINE|Alu|AluSx1	-	chr2	107820270	107826836	STRG.43605.1	-	107820270,107824560,107825668,107826680	107824185,107824743,107826126,107826836	0.953488
testis_male_adult_54_years	chr2	82325703	82325704	82325703	-	High_confidence	75	75	92	3.416145	5.434486	chr2	82325289	82326760	LTR|ERV1|LTR12C	-	chr2	82310131	82325769	STRG.41057.1	-	82310131,82323869,82325210	82310750,82323983,82325769	0.923913
testis_male_adult_54_years	chr19	51976459	51976496	51976477	+	RAMPAGE_only	2	2	9	0.334188	3.169925	chr19	51976453	51978688	LTR|ERVK|HERVK3-int	+	chr19	51949161	51981367	ZNF350-AS1|ENST00000595010.1	+	51949161,51976390,51980926	51949235,51976573,51981367	0.555556
testis_male_adult_54_years	chr16	83666625	83666673	83666625	+	RAMPAGE_only	4	4	17	0.631244	3.875000	chr16	83666513	83666815	LINE|L2|L2b	+	chr16	82626969	83795173	CDH13|ENST00000539548.6	+	82626969,82858361,83125384,83217344,83344861,83486476,83602453,83670789,83678207,83748107,83779967,83783253,83795022	82627137,82858473,83125501,83217497,83345006,83486655,83602594,83670972,83678461,83748250,83780201,83783472,83795173	0.823529
testis_male_adult_54_years	chr2	200519771	200519805	200519776	-	High_confidence	4	4	16	0.594112	3.327820	chr2	200519385	200519985	DNA|TcMar-Tigger|Tigger3c	-	chr2	200493225	200519784	KCTD18|ENST00000468413.5	-	200493225,200497752,200498890,200504769,200506856,200519697	200493274,200497847,200499084,200504959,200507091,200519784	0.937500
testis_male_adult_54_years	chr6	36769298	36769309	36769300	+	High_confidence	3	5	9	0.334188	3.000000	chr6	36769138	36769353	SINE|MIR|MIRc	-	chr6	36768484	36774651	Z85996.2|ENST00000650432.1	+	36768484,36774450	36769927,36774651	0.666667
testis_male_adult_54_years	chr9	95127459	95127497	95127496	-	High_confidence	5	6	24	0.891168	4.243300	chr9	95127352	95127591	DNA|hAT-Charlie|MER1B	-	chr9	95114134	95127420	FANCC|ENST00000464653.1	-	95114134,95117314,95125085,95126528	95114710,95117390,95125185,95127420	0.666667
testis_male_adult_54_years	chr15	30624362	30624368	30624362	+	High_confidence	4	4	9	0.334188	2.503258	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.777778
testis_male_adult_54_years	chr2	3536822	3536868	3536845	-	High_confidence	5	5	43	1.596676	5.144018	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531989	3536869	STRG.29812.6	-	3531989,3536723	3534255,3536869	0.790698
testis_male_adult_54_years	chr7	123763538	123763539	123763538	+	High_confidence	6	6	9	0.334188	3.169925	chr7	123762254	123763734	LTR|ERV1|LTR12C	-	chr7	123762902	123802191	STRG.172929.1	+	123762902,123787333,123802033	123763736,123787426,123802191	0.555556
testis_male_adult_54_years	chr2	187461472	187461484	187461483	+	High_confidence	5	6	19	0.705508	3.536887	chr2	187461411	187462268	LTR|ERV1|LTR1A2	+	chr2	187461319	187557116	STRG.53569.2	+	187461319,187499505,187546728,187547077,187547580,187554275,187555934	187462016,187499605,187546839,187547163,187547707,187554393,187557116	1.000000
testis_male_adult_54_years	chr19	28965109	28965174	28965155	+	High_confidence	39	46	260	9.654323	5.347575	chr19	28964872	28965578	LINE|L1|L1MC5	+	chr19	28965130	28970652	STRG.333765.1	+	28965130,28965929,28969671,28970200,28970403	28965355,28969042,28969839,28970267,28970652	0.961538
testis_male_adult_54_years	chr3	129456110	129456111	129456110	+	RAMPAGE_only	6	6	8	0.297056	2.750000	chr3	129456037	129456223	SINE|MIR|MIR	-	chr3	129440253	129520339	IFT122|ENST00000348417.6	+	129440253,129449870,129451913,129458598,129461227,129463559,129464634,129466889,129469341,129476314,129476662,129478015,129479784,129481529,129483484,129488256,129492140,129495445,129499901,129502710,129504318,129506408,129507667,129512311,129514388,129515487,129517468,129519106,129519567,129520175	129440371,129449937,129451998,129458677,129461304,129463626,129464781,129467066,129469417,129476506,129476801,129478218,129479922,129481694,129483682,129488397,129492194,129495607,129500068,129502882,129504421,129506549,129507762,129512412,129514554,129515599,129517594,129519186,129519732,129520339	0.625000
testis_male_adult_54_years	chr10	124882960	124882979	124882960	+	RAMPAGE_only	7	8	22	0.816904	3.725651	chr10	124882744	124882974	SINE|MIR|MIRc	-	chr10	124886261	124886634	STRG.227714.1	+	124886261	124886634	0.954545
testis_male_adult_54_years	chr8	2727243	2727254	2727253	+	High_confidence	3	3	9	0.334188	3.000000	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727215	2729202	STRG.178769.1	+	2727215	2729202	0.555556
testis_male_adult_54_years	chr22	23691568	23691569	23691568	-	RAMPAGE_only	12	12	13	0.482716	3.418296	chr22	23691427	23691602	LINE|L2|L2a	-	chr22	23638486	23693151	GUSBP11|ENST00000455485.5	-	23638486,23659864,23683724,23686830,23690235	23638942,23660000,23683867,23686995,23693151	0.923077
testis_male_adult_54_years	chr12	1257136	1257152	1257141	+	High_confidence	5	5	14	0.519848	3.546594	chr12	1256942	1257437	LTR|ERVL-MaLR|MLT1F	+	chr12	1257137	1371952	ERC1|ENST00000543263.2	+	1257137,1263033,1289851,1371832	1257237,1263165,1290012,1371952	0.571429
testis_male_adult_54_years	chr21	29651592	29651629	29651592	-	RAMPAGE_only	4	4	11	0.408452	2.921928	chr21	29651391	29651717	DNA|TcMar-Tigger|Tigger7	+	chr21	29536932	29939532	GRIK1|ENST00000327783.8	-	29536932,29537797,29555051,29561623,29576963,29581424,29587365,29588838,29591111,29596525,29598829,29642825,29651117,29654809,29672982,29689727,29693895,29939382	29537385,29537884,29555302,29561849,29577181,29581543,29587589,29589042,29591225,29596570,29598937,29642969,29651291,29654863,29673164,29689985,29694063,29939532	0.818182
testis_male_adult_54_years	chr12	69592123	69592147	69592146	+	RAMPAGE_only	4	4	9	0.334188	2.750000	chr12	69592196	69592505	SINE|Alu|AluSp	+	chr12	69585681	69601577	CCT2|NM_001198842.1	+	69585681,69586269,69586752,69587504,69587929,69588149,69589484,69592058,69592975,69593509,69597155,69597637,69597967,69598321,69599862,69601294	69586009,69586344,69586818,69587616,69588006,69588262,69589687,69592159,69593103,69593613,69597275,69597766,69598071,69598421,69600004,69601577	0.888889
testis_male_adult_54_years	chrX	111896050	111896070	111896061	+	RAMPAGE_only	2	2	7	0.259924	2.807355	chrX	111895979	111896310	LINE|L1|L1MEg2	-	chrX	111881896	111903990	TRPC5OS|NM_001195577.1	+	111881896,111895950,111896406,111901539	111882016,111896096,111896495,111903990	1.000000
testis_male_adult_54_years	chr3	139344535	139344548	139344547	+	High_confidence	169	169	424	15.743973	6.271705	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.889151
testis_male_adult_54_years	chr22	42596023	42596049	42596047	-	RAMPAGE_only	24	32	66	2.450713	5.055125	chr22	42596012	42596135	SINE|MIR|MIRb	+	chr22	42585886	42603012	POLDIP3|ENST00000491021.1	-	42585886,42587505,42591954,42595536,42596185,42597672,42599697,42601969,42602769	42585968,42587572,42592084,42595614,42596365,42597737,42599793,42602056,42603012	0.636364
testis_male_adult_54_years	chr2	106063234	106063241	106063240	+	High_confidence	372	376	915	33.975790	7.560990	chr2	106063052	106063413	LTR|ERVL-MaLR|MLT1A0	+	chr2	106063293	106078155	C2orf40|ENST00000409944.5	+	106063293,106064280,106071843,106073885,106077764	106063413,106064362,106071891,106074043,106078155	0.843716
testis_male_adult_54_years	chr3	163552661	163552694	163552661	+	High_confidence	5	5	12	0.445584	3.022055	chr3	163551509	163552885	LTR|ERV1|LTR12C	-	chr3	163552220	163553947	STRG.82026.1	+	163552220	163553947	0.750000
testis_male_adult_54_years	chr13	90495721	90495722	90495721	+	High_confidence	103	103	137	5.087086	5.186410	chr13	90494636	90496238	LTR|ERV1|LTR12C	+	chr13	90495972	90496541	STRG.273720.1	+	90495972	90496541	0.948905
testis_male_adult_54_years	chr4	158173024	158173025	158173024	-	High_confidence	15	15	18	0.668376	3.947703	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	1.000000
testis_male_adult_54_years	chr21	39411091	39411123	39411108	-	High_confidence	5	5	17	0.631244	3.969816	chr21	39411027	39411386	LINE|L1|L1ME2	+	chr21	39405977	39411147	LCA5L|ENST00000495240.1	-	39405977,39409978,39410263,39411032	39406612,39410096,39410367,39411147	1.000000
testis_male_adult_54_years	chr16	28720956	28720976	28720956	+	High_confidence	5	5	12	0.445584	3.251629	chr16	28720891	28721186	SINE|Alu|AluSc8	-	chr16	28721254	28735595	EIF3C|ENST00000565932.5	+	28721254,28723447,28724321,28724657,28724918,28726604,28727020,28731828,28734519,28734777,28734931,28735172,28735430	28723323,28723551,28724463,28724783,28725012,28726795,28727245,28732192,28734679,28734843,28735019,28735335,28735595	1.000000
testis_male_adult_54_years	chr13	93454865	93454896	93454880	+	High_confidence	37	57	162	6.015386	4.933901	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93454655	94029938	STRG.274089.3	+	93454655,93545262,93830153,94027728	93455438,93545421,93830545,94029938	0.987654
testis_male_adult_54_years	chr13	38567619	38567650	38567638	-	High_confidence	19	19	95	3.527541	5.827581	chr13	38567624	38569406	LINE|L1|L1PA16	+	chr13	38566085	38567637	STRG.266488.1	-	38566085,38567531	38567451,38567637	0.915789
testis_male_adult_54_years	chr4	78870158	78870192	78870191	+	RAMPAGE_only	10	10	20	0.742640	4.021928	chr4	78870184	78870442	LINE|L2|L2c	-	chr4	78859623	78879969	STRG.96744.5	+	78859623,78861388,78865556,78871849,78872613,78878733	78859687,78861468,78871060,78871948,78872798,78879969	1.000000
testis_male_adult_54_years	chr7	7969105	7969116	7969111	-	High_confidence	22	23	60	2.227921	5.267482	chr7	7969023	7969225	LINE|L1|L1M4b	-	chr7	7943266	7969128	STRG.157980.2	-	7943266,7949943,7958519,7968543	7946286,7950506,7958618,7969128	0.950000
testis_male_adult_54_years	chr1	54199994	54200029	54199996	-	High_confidence	20	35	103	3.824597	6.041985	chr1	54199790	54199971	SINE|MIR|MIRb	-	chr1	54172335	54200010	CYB5RL|ENST00000421415.5	-	54172335,54179148,54184160,54187651,54195418,54196368,54199975	54174822,54179352,54184265,54187739,54195715,54196491,54200010	0.747573
testis_male_adult_54_years	chr14	57274807	57274834	57274833	+	RAMPAGE_only	4	4	12	0.445584	3.277613	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.750000
testis_male_adult_54_years	chr7	128729795	128729801	128729795	+	RAMPAGE_only	3	3	7	0.259924	2.521641	chr7	128729646	128729825	SINE|MIR|MIR	+	chr7	128715388	128731743	FAM71F1|ENST00000315184.9	+	128715388,128716812,128718830,128723196,128726827,128729901,128731099	128715690,128716997,128719083,128723318,128726871,128730069,128731743	1.000000
testis_male_adult_54_years	chr3	81986143	81986176	81986150	+	High_confidence	19	19	56	2.079393	5.265131	chr3	81986020	81986349	LTR|ERV1|MER61A	+	chr3	81986151	82202454	LINC02008|ENST00000494340.1	+	81986151,82042724,82185351,82202328	81986381,82042790,82185453,82202454	0.535714
testis_male_adult_54_years	chr16	67571154	67571155	67571154	+	High_confidence	7	7	8	0.297056	2.807355	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.875000
testis_male_adult_54_years	chr12	10363706	10363707	10363706	+	High_confidence	50	51	60	2.227921	5.509762	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.800000
testis_male_adult_54_years	chr1	247748142	247748156	247748142	-	High_confidence	2	2	8	0.297056	2.521641	chr1	247747673	247749245	LTR|ERV1|MER31-int	-	chr1	247732757	247748123	STRG.28959.2	-	247732757,247734185,247735483,247747870	247733383,247734425,247735556,247748123	0.500000
testis_male_adult_54_years	chr1	23417904	23417931	23417904	-	RAMPAGE_only	2	2	7	0.259924	2.584963	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23408559	23419236	TCEA3|ENST00000374602.2	-	23408559,23417248,23417903,23419076	23408726,23417390,23418009,23419236	0.571429
testis_male_adult_54_years	chr22	34294565	34294590	34294589	+	High_confidence	8	8	24	0.891168	4.168296	chr22	34294521	34294764	LTR|ERVL-MaLR|MLT1L	+	chr22	34294459	34296319	STRG.355349.1	+	34294459	34296319	0.875000
testis_male_adult_54_years	chr3	46558476	46558504	46558476	-	High_confidence	4	4	13	0.482716	3.546594	chr3	46558357	46558849	LINE|L1|L1MEf	-	chr3	46532826	46558524	STRG.67067.1	-	46532826,46539044,46551466,46558383	46532909,46539201,46551610,46558524	0.692308
testis_male_adult_54_years	chr17	50518550	50518592	50518550	+	RAMPAGE_only	5	5	27	1.002564	4.236369	chr17	50518431	50518611	LINE|CR1|L3	-	chr17	50508621	50531497	MYCBPAP|ENST00000437498.1	+	50508621,50516569,50517292,50517594,50518540,50518973,50519639,50521109,50521315,50521972,50522938,50523596,50524876,50525880,50527286,50528154,50528694,50529017,50529764,50530212,50531326	50508750,50516697,50517452,50517698,50518724,50519089,50519787,50521225,50521431,50522081,50523128,50523784,50525023,50526267,50527408,50528270,50528840,50529188,50529824,50530312,50531497	0.962963
testis_male_adult_54_years	chr11	304387	304399	304387	+	RAMPAGE_only	3	3	10	0.371320	3.169925	chr11	304379	304657	LTR|ERV1|MER41E	-	chr11	307926	309392	IFITM2|ENST00000616316.1	+	307926,309012	308438,309392	0.700000
testis_male_adult_54_years	chr12	90917996	90918003	90917996	+	High_confidence	8	8	14	0.519848	3.664498	chr12	90917467	90918222	LTR|ERV1|LTR60B	-	chr12	90918022	90948669	LINC00615|ENST00000546725.1	+	90918022,90938670,90940148,90946423,90947654	90918050,90938753,90940360,90946491,90948669	0.785714
testis_male_adult_54_years	chr11	61949811	61949821	61949820	+	High_confidence	10	10	22	0.816904	4.201841	chr11	61949804	61949945	SINE|MIR|MIR3	-	chr11	61949820	61964461	BEST1|ENST00000378043.8	+	61949820,61951770,61955106,61955717,61956843,61957386,61958145,61959497,61959891,61962254,61964103	61950427,61951958,61955201,61955951,61956998,61957464,61958298,61959578,61960043,61962893,61964461	0.818182
testis_male_adult_54_years	chr11	118507906	118507928	118507927	+	High_confidence	4	5	13	0.482716	3.392747	chr11	118507682	118507980	SINE|Alu|AluY	+	chr11	118507901	118522868	KMT2A|ENST00000648565.1	+	118507901,118509135,118509947,118511950,118519617,118519956,118520801,118521287,118521896	118507972,118509200,118510118,118512025,118519792,118520064,118520885,118521417,118522868	0.769231
testis_male_adult_54_years	chr4	80301327	80301328	80301327	+	RAMPAGE_only	237	254	254	9.431531	6.239829	chr4	80301302	80301442	DNA|TcMar-Tigger|Tigger9b	+	chr4	80335719	80963756	C4orf22|NM_152770.2	+	80335719,80362753,80583092,80869992,80944809,80963516	80335879,80362884,80583183,80870135,80944939,80963756	0.889764
testis_male_adult_54_years	chrX	65520838	65520839	65520838	-	RAMPAGE_only	5	7	7	0.259924	2.807355	chrX	65520817	65520873	LINE|CR1|L3b	-	chrX	65512581	65534754	LAS1L|ENST00000374807.9	-	65512581,65514822,65517986,65523559,65524055,65524964,65528259,65529211,65529593,65531356,65532560,65533609,65534479	65512901,65514973,65518465,65523707,65524262,65525050,65528369,65529258,65529878,65531438,65532630,65533735,65534754	1.000000
testis_male_adult_54_years	chr8	57219110	57219125	57219110	+	High_confidence	2	2	9	0.334188	3.169925	chr8	57219003	57219613	LTR|ERV1|MER50-int	-	chr8	57219088	57232636	LINC01606|ENST00000519160.5	+	57219088,57219409,57220110,57221398,57222168,57222594,57229544,57231391	57219138,57219623,57220295,57221607,57222271,57222696,57229728,57232636	0.777778
testis_male_adult_54_years	chr6	31385156	31385170	31385169	-	RAMPAGE_only	17	17	44	1.633808	5.106937	chr6	31384093	31385123	LTR|ERVL|ERV3-16A3_I-int	-	chr6	31382901	31400607	STRG.139855.1	-	31382901,31386841,31398058	31383445,31387027,31400607	0.750000
testis_male_adult_54_years	chr3	156673129	156673135	156673134	-	High_confidence	6	6	14	0.519848	3.807355	chr3	156673031	156673229	LTR|ERVL-MaLR|MLT1H2	+	chr3	156671921	156672870	TIPARP-AS1|ENST00000463449.1	-	156671921,156672344	156672130,156672870	0.785714
testis_male_adult_54_years	chr3	188568990	188569044	188569004	+	High_confidence	320	324	1934	71.813309	6.332390	chr3	188568967	188569135	LINE|L2|L2a	-	chr3	188569030	188760201	LPP|ENST00000471917.1	+	188569030,188609160,188708266,188760112	188569128,188609844,188708393,188760201	0.882110
testis_male_adult_54_years	chr1	21111353	21111374	21111373	-	High_confidence	10	10	22	0.816904	3.984184	chr1	21111257	21111427	SINE|MIR|MIRb	+	chr1	20806291	21111383	EIF4G3|NM_003760.4	-	20806291,20810737,20813157,20817391,20825099,20827616,20829146,20840855,20849414,20851257,20853559,20854977,20857402,20860384,20862227,20864475,20865115,20879322,20886200,20893516,20895367,20899696,20904882,20941490,20950002,20969473,20973001,20980333,20981047,21002712,21050865,21111322	20807500,20810884,20813239,20817538,20825198,20827698,20829272,20841028,20849530,20851478,20853677,20855071,20857497,20860517,20862332,20864712,20865262,20879520,20886371,20893636,20895501,20899943,20904971,20942330,20950111,20969596,20973099,20980448,20981227,21002808,21050994,21111383	0.727273
testis_male_adult_54_years	chr9	84409496	84409497	84409496	+	High_confidence	113	117	126	4.678633	5.932654	chr9	84408306	84409815	LTR|ERV1|LTR12C	+	chr9	84409510	84619516	STRG.205403.1	+	84409510,84412081,84497468,84521061,84538990,84552233,84557435,84577531,84578770,84583196,84584082,84611636,84611849,84615073,84619288	84409840,84412198,84497746,84521225,84539083,84552323,84558054,84577658,84578869,84583283,84584222,84611749,84611997,84615204,84619516	0.857143
testis_male_adult_54_years	chr18	50097575	50097621	50097593	-	High_confidence	5	5	27	1.002564	4.700440	chr18	50097444	50097587	DNA|TcMar-Mariner|MARNA	-	chr18	50036548	50097620	STRG.327225.5	-	50036548,50040142,50055267,50097243	50036994,50040314,50055378,50097620	0.814815
testis_male_adult_54_years	chr12	104951527	104951534	104951527	-	High_confidence	12	12	34	1.262488	4.558051	chr12	104951478	104951633	DNA|DNA|UCON78	-	chr12	104928161	104951528	SLC41A2|ENST00000411411.1	-	104928161,104951490	104928694,104951528	0.794118
testis_male_adult_54_years	chr12	124840817	124840829	124840828	-	High_confidence	3	3	8	0.297056	2.521641	chr12	124840582	124840886	LINE|L2|L2b	+	chr12	124814972	124840543	STRG.262691.9	-	124814972,124817549,124840408	124815114,124817707,124840543	0.625000
testis_male_adult_54_years	chr19	36846880	36846885	36846880	-	RAMPAGE_only	4	4	8	0.297056	2.521641	chr19	36846721	36846945	LTR|ERVL|MER74B	+	chr19	36818321	36850267	ZNF790|NM_001242801.1	-	36818321,36823284,36823666,36825610,36850001	36820114,36823380,36823790,36825692,36850267	0.750000
testis_male_adult_54_years	chr12	105776063	105776065	105776063	+	RAMPAGE_only	10	18	20	0.742640	4.321928	chr12	105776064	105782085	LINE|L1|L1PA3	+	chr12	105785072	105785587	STRG.260801.1	+	105785072	105785587	0.650000
testis_male_adult_54_years	chr1	54659184	54659185	54659184	+	RAMPAGE_only	27	27	27	1.002564	4.430632	chr1	54659081	54659446	SINE|Alu|AluSp	-	chr1	54654086	54710261	MROH7|ENST00000440217.5	+	54654086,54665166,54668853,54670799,54673090,54673700,54674015,54678741,54679262,54679890,54686257,54692423,54695375,54700329,54701142,54702089,54702622,54706434,54709013,54709945	54654157,54665240,54668937,54670929,54673186,54673805,54674151,54678854,54679439,54680045,54686448,54692561,54695490,54700461,54701322,54702245,54702745,54706537,54709076,54710261	0.888889
testis_male_adult_54_years	chr9	113188423	113188483	113188482	+	High_confidence	6	7	37	1.373884	4.702565	chr9	113188470	113188512	LINE|L1|X9_LINE	+	chr9	113188420	113189546	STRG.209439.1	+	113188420	113189546	0.918919
testis_male_adult_54_years	chr17	36543432	36543460	36543432	-	High_confidence	3	3	12	0.445584	3.584963	chr17	36543165	36543452	SINE|Alu|AluSz	-	chr17	36533921	36543435	MYO19|ENST00000610496.1	-	36533921,36542080,36543125	36534104,36542165,36543435	0.500000
testis_male_adult_54_years	chr1	226467539	226467540	226467539	+	High_confidence	4	4	7	0.259924	2.584963	chr1	226467431	226467647	LINE|L2|L2a	+	chr1	226467645	226547883	STRG.26038.1	+	226467645,226474181,226477894,226547770	226468015,226474332,226478024,226547883	0.857143
testis_male_adult_54_years	chr12	72560538	72560550	72560538	+	High_confidence	3	3	12	0.445584	3.277613	chr12	72560544	72560853	SINE|Alu|AluJb	+	chr12	72560538	72618952	TRHDE|ENST00000549138.5	+	72560538,72562164,72562852,72568567,72575254,72575486,72618890	72560755,72562230,72563040,72568656,72575388,72575542,72618952	0.916667
testis_male_adult_54_years	chr17	31993952	31993994	31993993	+	High_confidence	21	21	65	2.413581	4.501189	chr17	31994036	31994094	LINE|L1|L1MA2	+	chr17	31994352	31999376	SUZ12|ENST00000578106.1	+	31994352,31995563,31996797,31998657	31994721,31995762,31996877,31999376	0.938462
testis_male_adult_54_years	chr7	99554981	99555058	99554981	-	High_confidence	22	22	107	3.973125	5.462969	chr7	99554599	99554946	LTR|ERVL|ERVL-B4-int	-	chr7	99546307	99555024	STRG.169738.2	-	99546307,99554658	99548506,99555024	0.934579
testis_male_adult_54_years	chr9	16388772	16388781	16388778	+	High_confidence	20	26	69	2.562109	5.771143	chr9	16388773	16388924	SINE|MIR|MIR	-	chr9	16388767	16406662	STRG.197997.2	+	16388767,16406262	16388982,16406662	0.623188
testis_male_adult_54_years	chr2	88504671	88504672	88504671	+	High_confidence	5	6	7	0.259924	2.807355	chr2	88504668	88504954	LTR|ERVL-MaLR|MLT1C	+	chr2	88503972	88523285	STRG.41523.5	+	88503972,88511386	88504894,88523285	0.714286
testis_male_adult_54_years	chr8	127948742	127948754	127948744	-	High_confidence	18	23	44	1.633808	4.879664	chr8	127948496	127948875	LTR|ERVL-MaLR|MLT1B	+	chr8	127946558	127948723	TMEM75|NR_103558.1	-	127946558	127948723	0.977273
testis_male_adult_54_years	chr4	170279998	170280031	170280019	-	High_confidence	8	8	39	1.448148	4.659387	chr4	170279986	170280159	DNA|hAT-Tip100|MER45A	-	chr4	170278913	170280130	STRG.107980.1	-	170278913	170280130	0.794872
testis_male_adult_54_years	chr3	183163806	183163841	183163840	-	High_confidence	25	29	74	2.747769	5.709189	chr3	183163785	183163921	SINE|MIR|MIRc	+	chr3	183153900	183163839	LAMP3|ENST00000476015.1	-	183153900,183162606,183163619	183154391,183162730,183163839	0.905405
testis_male_adult_54_years	chr18	66866653	66866713	66866675	-	High_confidence	18	19	122	4.530105	5.513786	chr18	66866519	66866942	LTR|ERV1|LTR12C	+	chr18	66864669	66866744	STRG.329160.1	-	66864669	66866744	0.754098
testis_male_adult_54_years	chr15	64316983	64317009	64317008	-	High_confidence	4	4	13	0.482716	3.418296	chr15	64316592	64317041	LTR|ERV1|LTR2	+	chr15	64216590	64317007	CSNK1G1|ENST00000635514.1	-	64216590,64251511,64259200,64300318,64316856	64216713,64251581,64259241,64300723,64317007	0.692308
testis_male_adult_54_years	chr3	39131500	39131508	39131507	+	High_confidence	6	6	15	0.556980	3.773557	chr3	39131370	39131535	SINE|MIR|MIRb	-	chr3	39131520	39138899	TTC21A|ENST00000472866.6	+	39131520,39133051,39134217,39135092,39136356,39136898,39137194,39137485,39138266,39138555,39138710	39131646,39133240,39134328,39135174,39136507,39137060,39137387,39137710,39138387,39138623,39138899	0.666667
testis_male_adult_54_years	chr2	54750447	54750473	54750472	-	RAMPAGE_only	6	6	18	0.668376	4.058814	chr2	54750433	54750631	LTR|ERVL-MaLR|MLT1K	-	chr2	54747102	54748404	AC104781.1|ENST00000449838.1	-	54747102,54748359	54747454,54748404	0.500000
testis_male_adult_54_years	chr2	95825760	95825873	95825872	-	RAMPAGE_only	32	34	96	3.564673	4.840078	chr2	95824349	95826979	LINE|L1|L1PA10	-	chr2	95807051	95826981	LINC00342|NR_103734.1	-	95807051,95814049,95824200	95807302,95814145,95826981	0.979167
testis_male_adult_54_years	chrX	27631912	27631945	27631912	+	RAMPAGE_only	3	4	11	0.408452	3.095795	chrX	27631891	27632332	LINE|L1|L1MB1	-	chrX	27590412	27748791	STRG.360953.1	+	27590412,27627351,27631878,27676945,27677835,27712557,27716087,27746837	27590440,27627458,27632000,27677045,27677912,27712649,27716171,27748791	0.909091
testis_male_adult_54_years	chr1	769592	769593	769592	-	RAMPAGE_only	5	5	7	0.259924	2.807355	chr1	769362	769790	LTR|ERVL-MaLR|MLT1D	+	chr1	764722	774280	AL669831.1|ENST00000428504.2	-	764722,765143,766328,768547,774170	764800,765247,766387,768613,774280	1.000000
testis_male_adult_54_years	chrX	136421475	136421476	136421475	+	High_confidence	69	69	80	2.970561	5.074912	chrX	136421124	136421903	LTR|ERV1|LTR12	+	chrX	136421494	136482999	STRG.369148.1	+	136421494,136482963	136421906,136482999	0.725000
testis_male_adult_54_years	chr2	191036375	191036376	191036375	-	RAMPAGE_only	5	5	8	0.297056	2.807355	chr2	191036335	191036559	LTR|ERV1|MER50	+	chr2	191031207	191033607	STAT4|ENST00000463951.1	-	191031207,191032957,191033489	191031516,191033149,191033607	0.500000
testis_male_adult_54_years	chr1	166850089	166850125	166850123	+	RAMPAGE_only	21	32	51	1.893733	4.813661	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166848924	166856344	STRG.18615.3	+	166848924,166849787,166852584	166849733,166850423,166856344	0.960784
testis_male_adult_54_years	chr5	82279566	82279591	82279576	+	High_confidence	8	8	22	0.816904	4.459432	chr5	82279305	82279599	LINE|L2|L2a	-	chr5	82279461	82318803	ATP6AP1L|ENST00000380167.8	+	82279461,82280959,82295492,82303486,82303773,82304614,82304933,82310156,82312610,82317997	82279878,82281011,82295544,82303527,82303832,82304850,82305481,82310207,82312851,82318803	0.727273
testis_male_adult_54_years	chr5	64766232	64766270	64766257	-	RAMPAGE_only	55	56	139	5.161350	6.574783	chr5	64766000	64766663	LINE|L2|L2b	+	chr5	64727670	64768619	SREK1IP1|ENST00000495198.6	-	64727670,64741056,64754314,64768504	64728179,64741200,64754362,64768619	0.539568
testis_male_adult_54_years	chr2	142931165	142931185	142931184	+	High_confidence	151	154	353	13.107600	6.742233	chr2	142930834	142931241	LTR|ERV1|MER48	-	chr2	142931176	142933114	STRG.47262.2	+	142931176	142933114	0.764873
testis_male_adult_54_years	chr21	22984519	22984545	22984519	-	High_confidence	3	3	10	0.371320	3.321928	chr21	22984210	22984555	LTR|ERVL-MaLR|THE1D	-	chr21	22961364	22984758	STRG.349394.1	-	22961364,22984292	22966348,22984758	0.600000
testis_male_adult_54_years	chr7	26638355	26638358	26638355	+	High_confidence	9	9	20	0.742640	4.247928	chr7	26638161	26638531	LTR|ERVL-MaLR|THE1C	+	chr7	26638456	26647305	C7orf71|ENST00000614528.3	+	26638456,26640695,26646299	26639344,26640764,26647305	0.550000
testis_male_adult_54_years	chr16	55049317	55049321	55049317	-	High_confidence	6	6	10	0.371320	2.947703	chr16	55049157	55049658	DNA|TcMar-Tigger|Tigger13a	+	chr16	55045699	55049318	AC109136.1|ENST00000650608.1	-	55045699,55046573,55049115	55045987,55047000,55049318	0.800000
testis_male_adult_54_years	chr10	5624679	5624687	5624679	+	High_confidence	7	7	15	0.556980	3.664498	chr10	5624729	5624876	SINE|MIR|MIRb	+	chr10	5624694	5626686	STRG.212929.1	+	5624694,5625853	5624942,5626686	0.666667
testis_male_adult_54_years	chr3	81977492	81977526	81977492	-	High_confidence	10	10	25	0.928300	4.483856	chr3	81976402	81978761	DNA|TcMar-Tigger|Tigger2	-	chr3	81976802	81977593	STRG.71436.1	-	81976802	81977593	0.840000
testis_male_adult_54_years	chr19	56833495	56833512	56833500	-	High_confidence	5	5	13	0.482716	3.584963	chr19	56833344	56833537	LTR|ERVL-MaLR|MLT1O	-	chr19	56814387	56833747	PEG3|ENST00000647852.1	-	56814387,56817745,56818599,56821650,56822752,56823589,56824261,56826387,56827133,56833289,56833642	56817579,56817838,56818702,56821754,56822836,56823679,56824427,56826463,56827246,56833420,56833747	0.615385
testis_male_adult_54_years	chr20	25296915	25296949	25296915	+	RAMPAGE_only	7	8	15	0.556980	3.324863	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	0.933333
testis_male_adult_54_years	chr1	236275678	236275712	236275711	-	RAMPAGE_only	8	8	21	0.779772	4.070656	chr1	236275574	236275726	LTR|ERVL|MER21C	-	chr1	236236331	236281601	ERO1B|ENST00000366589.1	-	236236331,236243421,236249884,236252049,236253421,236269874,236281466	236236398,236243495,236249967,236252091,236253505,236269994,236281601	0.714286
testis_male_adult_54_years	chr22	32371292	32371293	32371292	-	High_confidence	6	6	7	0.259924	2.584963	chr22	32371175	32371447	SINE|Alu|AluY	+	chr22	32359905	32371076	RFPL3S|ENST00000400234.5	-	32359905,32362971,32367689,32368496,32370898	32360839,32363058,32367714,32368567,32371076	0.714286
testis_male_adult_54_years	chr3	144757825	144757826	144757825	+	High_confidence	65	66	84	3.119089	5.823717	chr3	144756711	144758239	LTR|ERV1|LTR12C	+	chr3	144757839	144759342	STRG.79520.1	+	144757839	144759342	0.964286
testis_male_adult_54_years	chr3	102732101	102732106	102732105	-	High_confidence	10	10	27	1.002564	4.458591	chr3	102732010	102732436	LTR|ERV1|MER41B	+	chr3	102730089	102732085	STRG.73245.1	-	102730089,102731440,102731780	102730243,102731496,102732085	0.555556
testis_male_adult_54_years	chr15	62212797	62212827	62212797	-	RAMPAGE_only	9	9	15	0.556980	3.324863	chr15	62212626	62214081	LTR|ERVK|HERVK14-int	-	chr15	62194266	62220216	STRG.295622.3	-	62194266	62220216	0.933333
testis_male_adult_54_years	chr5	26484710	26484711	26484710	-	High_confidence	81	81	85	3.156221	5.144863	chr5	26484296	26485843	LTR|ERV1|LTR12C	-	chr5	26484301	26484692	STRG.115046.1	-	26484301	26484692	0.870588
testis_male_adult_54_years	chr1	54200557	54200588	54200557	+	High_confidence	4	8	25	0.928300	4.483856	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.680000
testis_male_adult_54_years	chr1	4556408	4556414	4556408	-	High_confidence	14	18	33	1.225356	4.657882	chr1	4556267	4556779	DNA|hAT-Charlie|Charlie1b	+	chr1	4555869	4556404	STRG.596.1	-	4555869	4556404	0.636364
testis_male_adult_54_years	chr17	50834853	50834854	50834853	+	High_confidence	5	5	8	0.297056	2.750000	chr17	50834717	50834860	SINE|MIR|MIRc	+	chr17	50834649	50841308	WFIKKN2|ENST00000426127.1	+	50834649,50839498	50835032,50841308	0.500000
testis_male_adult_54_years	chr15	59264989	59265003	59264993	-	High_confidence	4	4	12	0.445584	3.277613	chr15	59264739	59265036	SINE|Alu|AluJr	+	chr15	59223058	59264997	MYO1E|ENST00000558814.1	-	59223058,59224688,59227458,59231701,59236584,59256283,59264902	59223191,59224823,59227590,59231791,59236672,59256378,59264997	0.750000
testis_male_adult_54_years	chr22	31641374	31641400	31641386	-	RAMPAGE_only	5	6	14	0.519848	3.546594	chr22	31641154	31641534	DNA|TcMar-Tigger|Tigger7	-	chr22	31623683	31638445	PISD|ENST00000429683.1	-	31623683,31625762,31632182,31638365	31623849,31626016,31632291,31638445	0.571429
testis_male_adult_54_years	chr6	147743342	147743367	147743366	-	High_confidence	4	5	15	0.556980	3.521641	chr6	147743225	147743517	SINE|Alu|AluY	+	chr6	147741433	147743324	AL365271.1|ENST00000448909.1	-	147741433,147743172	147741884,147743324	0.533333
testis_male_adult_54_years	chr14	69214121	69214166	69214131	+	RAMPAGE_only	9	9	25	0.928300	4.220176	chr14	69213900	69214467	LINE|L1|L1MEd	-	chr14	69224129	69230585	EXD2|ENST00000489133.6	+	69224129,69228815,69230471	69224279,69229072,69230585	0.600000
testis_male_adult_54_years	chr8	138661515	138661549	138661548	-	RAMPAGE_only	4	4	22	0.816904	4.459432	chr8	138661432	138661543	LINE|L2|L2b	-	chr8	138588234	138722193	COL22A1|ENST00000341807.8	-	138588234,138591423,138594016,138596903,138598718,138602114,138604733,138606380,138607935,138613866,138616000,138616913,138619454,138623731,138626189,138630694,138635009,138636741,138646628,138649664,138655896,138660435,138662029,138663704,138676557,138684424,138685207,138688916,138690820,138693645,138694507,138694825,138700111,138703305,138715681,138716226,138716824,138720738,138722147	138589440,138591501,138594199,138596970,138598898,138602159,138604769,138606452,138607989,138613920,138616054,138616958,138619508,138623785,138626243,138630748,138635063,138636795,138646682,138649778,138655944,138660480,138662083,138663740,138676635,138684469,138685312,138688970,138690874,138693699,138694561,138694879,138700144,138703347,138715735,138716289,138716869,138720792,138722193	0.727273
testis_male_adult_54_years	chr10	59303176	59303189	59303176	-	High_confidence	3	6	17	0.631244	3.750000	chr10	59302952	59303486	LINE|L2|L2a	+	chr10	59257754	59302856	STRG.218958.12	-	59257754,59268552,59269898,59283362,59302800	59264166,59268691,59270109,59283447,59302856	0.705882
testis_male_adult_54_years	chr22	23538290	23538291	23538290	+	RAMPAGE_only	5	5	8	0.297056	2.750000	chr22	23537739	23538729	LTR|ERVK|LTR5B	+	chr22	23536880	23539480	PCAT14|ENST00000629869.1	+	23536880,23538760	23537136,23539480	0.750000
testis_male_adult_54_years	chr2	740915	740933	740915	+	High_confidence	5	5	9	0.334188	2.750000	chr2	740860	741050	LTR|ERVL-MaLR|MLT1D	+	chr2	739972	750593	STRG.29272.1	+	739972,749733,750410	741130,749856,750593	0.555556
testis_male_adult_54_years	chr7	119907374	119907375	119907374	-	RAMPAGE_only	100	102	131	4.864293	5.136315	chr7	119907219	119907508	LTR|ERVL-MaLR|THE1A	-	chr7	119799897	119800849	STRG.172551.3	-	119799897	119800849	0.725191
testis_male_adult_54_years	chr20	20220122	20220142	20220122	+	High_confidence	32	34	89	3.304749	6.124093	chr20	20219794	20220708	LTR|ERVL|MER21C	+	chr20	20220128	20225322	CFAP61|ENST00000493330.5	+	20220128,20221060,20221731,20225288	20220252,20221234,20222008,20225322	0.516854
testis_male_adult_54_years	chr1	79270204	79270240	79270204	+	High_confidence	2	3	17	0.631244	3.875000	chr1	79269498	79270456	LTR|ERV1|LTR12C	+	chr1	79269937	79271335	STRG.10561.1	+	79269937	79271335	0.882353
testis_male_adult_54_years	chr12	94408094	94408120	94408110	-	High_confidence	10	10	48	1.782337	4.889199	chr12	94407809	94408114	SINE|Alu|AluSx	-	chr12	94369952	94408104	CEP83|ENST00000549352.1	-	94369952,94375885,94378790,94400849,94403169,94407936	94370036,94376017,94379042,94400981,94403262,94408104	0.812500
testis_male_adult_54_years	chr7	103199439	103199454	103199453	-	RAMPAGE_only	10	11	40	1.485280	4.765795	chr7	103199189	103199900	DNA|TcMar-Tigger|MER44C	+	chr7	103175272	103202267	STRG.170403.9	-	103175272,103182377,103184001,103185437,103195439,103197186	103175411,103182477,103184127,103185537,103195614,103202267	0.900000
testis_male_adult_54_years	chr1	234474933	234474969	234474968	+	High_confidence	59	59	146	5.421274	5.506237	chr1	234474781	234476017	LINE|L1|L1MCc	+	chr1	234474955	234477511	STRG.27227.1	+	234474955	234477511	0.972603
testis_male_adult_54_years	chr20	3795750	3795789	3795750	+	High_confidence	31	32	121	4.492973	5.742074	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.966942
testis_male_adult_54_years	chr20	36847166	36847203	36847183	-	RAMPAGE_only	10	10	36	1.336752	4.669925	chr20	36847022	36847259	SINE|MIR|MIRb	-	chr20	36597674	36839402	STRG.344970.2	-	36597674,36781322,36793248,36796881,36797501,36802855,36804734,36805852,36808512,36809981,36812703,36815125,36817406,36829053,36839216	36598156,36786637,36794599,36796952,36797573,36803107,36804902,36805957,36808743,36810107,36812844,36816307,36817469,36829212,36839402	0.972222
testis_male_adult_54_years	chr12	9450416	9450525	9450416	+	High_confidence	7	7	78	2.896297	4.572360	chr12	9449408	9450949	LTR|ERV1|LTR12C	-	chr12	9450281	9585476	STRG.246806.2	+	9450281,9461323,9584105	9450632,9461434,9585476	0.666667
testis_male_adult_54_years	chr16	64343870	64343894	64343893	-	High_confidence	3	3	9	0.334188	2.750000	chr16	64343711	64345204	LTR|ERV1|LTR12C	+	chr16	64242607	64343909	AC012322.1|ENST00000561657.1	-	64242607,64245743,64294079,64317565,64343528	64242850,64245777,64294166,64317681,64343909	0.666667
testis_male_adult_54_years	chr5	72771732	72771733	72771732	-	RAMPAGE_only	126	127	164	6.089650	6.232201	chr5	72771382	72771928	LTR|ERVL-MaLR|MLT1F	-	chr5	72770678	72816565	STRG.119271.6	-	72770678,72771614,72794398,72816152	72770866,72771726,72794484,72816565	0.658537
testis_male_adult_54_years	chr8	129904528	129904578	129904528	-	RAMPAGE_only	3	3	19	0.705508	3.932138	chr8	129904249	129904641	LTR|ERVL|LTR16E2	+	chr8	129849291	129903351	FAM49B|ENST00000639004.1	-	129849291,129849326,129850834,129852161,129854265,129855610,129855674,129862228,129862262,129871374,129879388,129903311	129849324,129849369,129850914,129852278,129854343,129855673,129855747,129862260,129862335,129871496,129879471,129903351	0.894737
testis_male_adult_54_years	chr17	68557489	68557490	68557489	+	High_confidence	7	7	7	0.259924	2.807355	chr17	68557304	68557668	LTR|ERVL-MaLR|MLT1A0	+	chr17	68558093	68558393	STRG.321598.1	+	68558093	68558393	0.571429
testis_male_adult_54_years	chr17	51335149	51335167	51335149	-	High_confidence	4	4	8	0.297056	2.807355	chr17	51334984	51335329	LTR|ERVL-MaLR|MLT1A0	-	chr17	51312608	51335162	LOC101927274|NR_110751.1	-	51312608,51321585,51323632,51332999,51333711,51334345	51312784,51321676,51323732,51333128,51334118,51335162	0.875000
testis_male_adult_54_years	chr6	108960916	108960953	108960936	+	RAMPAGE_only	6	6	22	0.816904	4.186704	chr6	108960478	108961059	LINE|L2|L2a	-	chr6	108959459	108965117	ARMC2|ENST00000481850.1	+	108959459,108961571,108962013,108964179,108964979	108959519,108961694,108962127,108964312,108965117	0.500000
testis_male_adult_54_years	chr6	112396368	112396393	112396382	-	High_confidence	57	57	246	9.134475	6.730583	chr6	112396181	112396409	LINE|L2|L2a	+	chr6	112392239	112396406	STRG.149576.1	-	112392239,112393996,112396301	112392863,112394153,112396406	0.813008
testis_male_adult_54_years	chr10	59960884	59960896	59960884	-	High_confidence	107	107	315	11.696583	5.588567	chr10	59960613	59961584	LINE|L1|L1MA6	-	chr10	59955429	59960882	LINC01553|ENST00000521074.1	-	59955429,59959565,59960850	59959323,59959968,59960882	0.965079
testis_male_adult_54_years	chr12	31117598	31117609	31117606	-	High_confidence	35	44	78	2.896297	4.869785	chr12	31117577	31118801	LINE|L1|L1MDa	-	chr12	31111651	31117471	AC024940.1|ENST00000542490.5	-	31111651,31112111,31112980,31114395,31114836,31115202,31116356,31117419	31111809,31112288,31113083,31114464,31114927,31115703,31116469,31117471	0.910256
testis_male_adult_54_years	chr3	27367765	27367777	27367765	+	High_confidence	9	12	26	0.965432	4.392747	chr3	27367611	27367898	LINE|L2|L2b	-	chr3	27368749	27387886	STRG.65086.1	+	27368749,27387671,27387856	27370542,27387761,27387886	0.653846
testis_male_adult_54_years	chr6	80085411	80085447	80085429	+	RAMPAGE_only	2	2	12	0.445584	3.277613	chr6	80085211	80085524	SINE|Alu|AluY	+	chr6	80106609	80346270	BCKDHB|NR_134945.1	+	80106609,80127546,80129160,80167677,80168874,80169810,80171281,80200933,80203101,80273134,80343663	80106889,80127624,80129229,80167811,80169030,80169904,80171390,80201031,80203212,80273221,80346270	0.666667
testis_male_adult_54_years	chr11	104366530	104366581	104366530	+	High_confidence	7	7	41	1.522412	4.912273	chr11	104365603	104366774	LTR|ERV1|LTR12D	-	chr11	104366435	104426425	STRG.241143.1	+	104366435,104370650,104421220	104366793,104370756,104426425	0.756098
testis_male_adult_54_years	chr16	74304141	74304142	74304141	+	RAMPAGE_only	9	9	11	0.408452	3.459432	chr16	74304086	74304223	LINE|RTE-X|L4_A_Mam	-	chr16	74296828	74304709	PSMD7|ENST00000568615.2	+	74296828,74300114,74301051,74301554,74302211,74304302	74296988,74300206,74301144,74301652,74302292,74304709	0.545455
testis_male_adult_54_years	chr5	85647822	85647872	85647822	-	High_confidence	13	16	62	2.302185	5.448394	chr5	85647706	85648160	LTR|ERV1|LTR71A	-	chr5	85619237	85647624	STRG.121087.2	-	85619237,85629687,85633293,85635203,85647484	85620193,85629814,85633429,85635252,85647624	0.725806
testis_male_adult_54_years	chr7	112423385	112423403	112423400	+	High_confidence	27	27	48	1.782337	5.012480	chr7	112423337	112423544	SINE|MIR|MIRb	-	chr7	112423143	112475527	IFRD1|ENST00000005558.8	+	112423143,112450507,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112423432,112450782,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112475527	0.791667
testis_male_adult_54_years	chr6	35318910	35318925	35318924	+	High_confidence	6	6	10	0.371320	3.121928	chr6	35318902	35319096	SINE|MIR|MIRb	+	chr6	35318134	35321771	STRG.140578.10	+	35318134,35319523,35319818,35320883,35321186	35318895,35319690,35320017,35320974,35321771	1.000000
testis_male_adult_54_years	chr13	57286803	57286877	57286826	+	High_confidence	9	9	31	1.151092	4.438067	chr13	57285459	57287161	LTR|ERV1|LTR12C	-	chr13	57286538	57408294	STRG.269582.1	+	57286538,57408217	57287202,57408294	0.645161
testis_male_adult_54_years	chr19	44914321	44914338	44914321	+	High_confidence	4	4	8	0.297056	2.521641	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.750000
testis_male_adult_54_years	chr8	56489124	56489129	56489126	+	RAMPAGE_only	13	22	41	1.522412	5.028992	chr8	56488917	56489306	LTR|ERVL-MaLR|MSTB	+	chr8	56445806	56552067	LOC101929415|NR_125813.1	+	56445806,56496222,56548292,56550317	56446500,56496355,56548358,56552067	0.560976
testis_male_adult_54_years	chr2	147519349	147519359	147519358	-	High_confidence	4	4	10	0.371320	2.921928	chr2	147519286	147519460	SINE|MIR|MIR3	-	chr2	147518466	147519160	STRG.47852.1	-	147518466	147519160	0.900000
testis_male_adult_54_years	chr5	109451613	109451628	109451627	+	High_confidence	3	3	7	0.259924	2.584963	chr5	109451578	109451735	LTR|ERVL-MaLR|MLT1K	+	chr5	109451692	109469840	STRG.124453.1	+	109451692,109455675,109466055,109468919	109451753,109455919,109466186,109469840	0.857143
testis_male_adult_54_years	chr3	15571207	15571224	15571207	-	RAMPAGE_only	45	45	71	2.636373	5.384898	chr3	15570980	15571256	SINE|Alu|AluJr	-	chr3	15560745	15601557	HACL1|ENST00000383779.8	-	15560745,15563357,15564550,15567843,15568431,15571667,15573158,15579909,15582876,15585247,15586524,15591599,15596383,15601089,15601382	15560897,15563544,15564658,15568002,15568586,15571769,15573242,15580045,15582989,15585342,15586602,15591680,15596424,15601194,15601557	0.591549
testis_male_adult_54_years	chr7	145697717	145697741	145697736	+	High_confidence	6	6	27	1.002564	4.323856	chr7	145696593	145697932	LTR|ERV1|LTR12C	-	chr7	145697360	145785654	STRG.176376.1	+	145697360,145783714	145698001,145785654	0.518519
testis_male_adult_54_years	chr3	29472866	29472867	29472866	-	High_confidence	36	36	36	1.336752	4.329240	chr3	29472465	29474067	LTR|ERV1|LTR12C	-	chr3	29472266	29472854	STRG.65354.1	-	29472266	29472854	0.944444
testis_male_adult_54_years	chr10	72848050	72848069	72848052	+	High_confidence	15	23	51	1.893733	4.826496	chr10	72848100	72848163	DNA|TcMar-Tigger|MER47C	+	chr10	72848012	72860740	STRG.221625.7	+	72848012,72859176,72860422	72848608,72859347,72860740	0.862745
testis_male_adult_54_years	chr17	11882207	11882219	11882207	-	High_confidence	5	5	18	0.668376	3.734522	chr17	11882075	11882400	LTR|ERVL-MaLR|MLT1B	-	chr17	11874931	11882173	STRG.314258.1	-	11874931,11875721,11881183	11875113,11875880,11882173	0.722222
testis_male_adult_54_years	chr10	61041381	61041430	61041429	+	High_confidence	86	86	137	5.087086	5.681886	chr10	61040490	61041861	LTR|ERV1|LTR12C	+	chr10	61041387	61043171	STRG.219025.1	+	61041387	61043171	0.992701
testis_male_adult_54_years	chr17	76302593	76302614	76302613	+	High_confidence	6	6	16	0.594112	3.875000	chr17	76302392	76302821	LTR|ERVL-MaLR|MLT1D	+	chr17	76302557	76303258	STRG.322306.1	+	76302557	76303258	0.625000
testis_male_adult_54_years	chr1	26269612	26269613	26269612	+	High_confidence	9	9	10	0.371320	3.169925	chr1	26269629	26269767	SINE|MIR|MIR3	+	chr1	26269289	26278807	CEP85|ENST00000469609.5	+	26269289,26269459,26271013,26272020,26274963,26276534,26277132	26269364,26269614,26271107,26272071,26275071,26276760,26278807	0.700000
testis_male_adult_54_years	chr10	47095792	47095793	47095792	-	High_confidence	25	26	29	1.076828	4.532665	chr10	47095765	47096242	LTR|ERV1|LTR12	+	chr10	47095237	47095782	STRG.217864.1	-	47095237	47095782	0.724138
testis_male_adult_54_years	chr10	9183620	9183638	9183636	-	High_confidence	17	29	46	1.708073	5.088779	chr10	9183166	9184557	LTR|ERV1|LTR12C	+	chr10	9063045	9183783	STRG.213521.3	-	9063045,9176070,9183154	9065439,9176220,9183783	0.826087
testis_male_adult_54_years	chr12	112873860	112873916	112873869	+	High_confidence	14	14	68	2.524977	5.577210	chr12	112873817	112873966	LINE|L2|L2c	+	chr12	112873869	112883343	RPH3A|ENST00000552755.1	+	112873869,112874784,112875083,112875678,112876641,112879118,112881771,112883292	112874158,112874957,112875170,112875741,112876866,112879198,112881846,112883343	0.838235
testis_male_adult_54_years	chr4	177381365	177381366	177381365	-	High_confidence	23	23	28	1.039696	4.450212	chr4	177380669	177382315	LTR|ERV1|LTR28C	-	chr4	177343003	177381348	STRG.109191.1	-	177343003,177356994,177381314	177343718,177357170,177381348	0.857143
testis_male_adult_54_years	chr16	35516862	35516916	35516862	+	RAMPAGE_only	17	19	75	2.784901	5.878114	chr16	35516603	35517040	LTR|ERVK|LTR3B_	+	chr16	35506292	35524564	STRG.305854.2	+	35506292,35517014,35522118	35508765,35517144,35524564	0.733333
testis_male_adult_54_years	chr1	19298114	19298125	19298114	+	High_confidence	16	18	43	1.596676	3.748995	chr1	19297940	19298445	LTR|ERVL|MLT2A2	+	chr1	19297539	19308106	STRG.2296.1	+	19297539,19305210	19298412,19308106	0.930233
testis_male_adult_54_years	chr3	129488257	129488296	129488295	+	High_confidence	6	10	25	0.928300	4.293661	chr3	129488271	129488306	SINE|5S-Deu-L2|AmnSINE1	+	chr3	129487505	129520355	IFT122|ENST00000511425.5	+	129487505,129488256,129492140,129499901,129502710,129504318,129506408,129507667,129512311,129514388,129515487,129517468,129519106,129519567,129520175	129487927,129488397,129492194,129500068,129502882,129504421,129506549,129507762,129512412,129514554,129515599,129517594,129519186,129519732,129520355	0.680000
testis_male_adult_54_years	chr15	22758428	22758439	22758428	+	High_confidence	4	4	9	0.334188	3.000000	chr15	22758208	22758505	SINE|Alu|AluYm1	+	chr15	22758492	22764516	AC138649.1|ENST00000618814.1	+	22758492,22758818,22764223	22758525,22758921,22764516	0.555556
testis_male_adult_54_years	chr10	662890	662906	662890	+	High_confidence	19	25	65	2.413581	5.272508	chr10	662485	662890	DNA|TcMar-Tigger|Tigger13a	+	chr10	662923	669743	STRG.211972.1	+	662923,666217,666629	663702,666599,669743	0.938462
testis_male_adult_54_years	chr15	20826213	20826226	20826225	-	High_confidence	4	4	8	0.297056	2.521641	chr15	20825752	20826217	LINE|L1|L1P4	-	chr15	20803504	20826173	AC012414.7|ENST00000621235.1	-	20803504,20818038,20826148	20804932,20818092,20826173	0.875000
testis_male_adult_54_years	chr2	61159435	61159436	61159435	+	RAMPAGE_only	5	5	8	0.297056	2.750000	chr2	61159295	61159595	SINE|Alu|AluSz	-	chr2	61162190	61164825	C2orf74|ENST00000488469.3	+	61162190,61162415,61162841,61163090,61164353	61162320,61162609,61162973,61163232,61164825	1.000000
testis_male_adult_54_years	chr16	29917144	29917164	29917163	+	RAMPAGE_only	3	5	9	0.334188	2.725481	chr16	29916712	29917213	LTR|ERVL-MaLR|MLT1F	-	chr16	29900857	29919864	ASPHD1|ENST00000566693.1	+	29900857,29904851,29905787,29906078,29919530	29901920,29904965,29905959,29906127,29919864	0.777778
testis_male_adult_54_years	chr12	127983862	127983882	127983862	-	High_confidence	77	80	117	4.344445	5.265897	chr12	127983198	127984510	LTR|ERV1|LTR12C	+	chr12	127940594	127983857	STRG.263340.4	-	127940594,127983066	127940735,127983857	0.863248
testis_male_adult_54_years	chr13	111588089	111588104	111588093	-	High_confidence	22	22	52	1.930865	5.286790	chr13	111587853	111588246	LTR|ERVL-MaLR|MLT1C	-	chr13	111587190	111587839	STRG.276289.1	-	111587190	111587839	0.576923
testis_male_adult_54_years	chr21	27746301	27746337	27746333	+	High_confidence	94	94	494	18.343213	5.891888	chr21	27746272	27746768	LTR|ERV1|LOR1a	-	chr21	27746276	27751224	STRG.349979.1	+	27746276,27751071	27746594,27751224	0.973684
testis_male_adult_54_years	chr4	18418415	18418433	18418415	+	High_confidence	24	25	76	2.822033	5.189973	chr4	18417470	18418903	LTR|ERV1|LTR12C	-	chr4	18418418	18738301	STRG.90794.1	+	18418418,18488856,18629099,18738229	18418962,18488945,18629295,18738301	0.710526
testis_male_adult_54_years	chr19	42739461	42739478	42739477	-	High_confidence	7	7	13	0.482716	3.251629	chr19	42739304	42739617	LINE|L2|L2a	+	chr19	42733588	42739476	PSG3|ENST00000490592.1	-	42733588,42734046,42738723,42739320	42733726,42734195,42739089,42739476	0.769231
testis_male_adult_54_years	chr9	73080369	73080370	73080369	-	High_confidence	22	22	22	0.816904	4.368523	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.954545
testis_male_adult_54_years	chr5	147382883	147382900	147382883	+	High_confidence	21	21	89	3.304749	4.770160	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.898876
testis_male_adult_54_years	chr18	72919915	72919923	72919915	-	High_confidence	4	4	8	0.297056	2.750000	chr18	72918248	72920682	LINE|L1|L1MA3	-	chr18	72913458	72919868	STRG.329941.1	-	72913458	72919868	1.000000
testis_male_adult_54_years	chr14	100573693	100573722	100573702	+	RAMPAGE_only	9	9	51	1.893733	5.257367	chr14	100573668	100574066	LINE|L2|L2b	-	chr14	100578228	100580137	STRG.288652.1	+	100578228	100580137	0.607843
testis_male_adult_54_years	chr1	155637551	155637569	155637568	-	High_confidence	14	14	35	1.299620	4.000432	chr1	155637451	155637661	LTR|ERV1|LTR12F	-	chr1	155632611	155638064	STRG.17489.8	-	155632611	155638064	0.714286
testis_male_adult_54_years	chr4	62491814	62491815	62491814	+	High_confidence	8	10	10	0.371320	3.121928	chr4	62491042	62492459	LTR|ERV1|LTR12C	-	chr4	62491963	62492618	STRG.95155.1	+	62491963	62492618	0.900000
testis_male_adult_54_years	chr1	28681084	28681093	28681084	+	RAMPAGE_only	7	7	14	0.519848	3.546594	chr1	28681065	28681270	LINE|L2|L2c	-	chr1	28683563	28715065	GMEB1|ENST00000480454.1	+	28683563,28690073,28691584,28692941,28696926,28702437,28704191,28710519,28714072	28683740,28690186,28691709,28693045,28697084,28702569,28704329,28710642,28715065	0.642857
testis_male_adult_54_years	chr13	54572234	54572235	54572234	+	High_confidence	26	26	38	1.411016	4.774243	chr13	54572234	54573121	LINE|L1|L1HS	+	chr13	54572241	54600004	STRG.268807.1	+	54572241,54581570,54599978	54572331,54581771,54600004	0.710526
testis_male_adult_54_years	chr2	177342264	177342280	177342279	-	High_confidence	5	5	12	0.445584	3.277613	chr2	177342059	177342526	LINE|L2|L2	+	chr2	177338387	177342367	AC019080.1|ENST00000611493.1	-	177338387,177342009	177338699,177342367	0.833333
testis_male_adult_54_years	chr15	47396568	47396605	47396604	-	High_confidence	6	8	18	0.668376	3.947703	chr15	47396259	47396814	LTR|ERVL|MLT2A2	-	chr15	47394862	47396668	STRG.293691.1	-	47394862,47396350	47395688,47396668	0.833333
testis_male_adult_54_years	chr3	15720653	15720657	15720656	-	High_confidence	9	9	16	0.594112	4.000000	chr3	15720286	15720858	LINE|L1|L1ME2z	-	chr3	15709667	15721122	ANKRD28|ENST00000492895.1	-	15709667,15711210,15712139,15713526,15720914	15709736,15711274,15712222,15713641,15721122	0.500000
testis_male_adult_54_years	chr7	35106924	35106939	35106924	-	High_confidence	11	11	47	1.745205	4.784432	chr7	35106672	35107386	DNA|TcMar-Tigger|MER44C	+	chr7	35089843	35107734	DPY19L2P1|ENST00000436258.1	-	35089843,35104643,35106043	35091946,35104763,35107734	0.787234
testis_male_adult_54_years	chr15	62228916	62228956	62228916	+	RAMPAGE_only	14	16	34	1.262488	4.793345	chr15	62228862	62229278	LTR|ERVL-MaLR|MSTB	-	chr15	62222394	62271304	STRG.295655.1	+	62222394,62254960,62268139	62246950,62267854,62271304	1.000000
testis_male_adult_54_years	chr3	131027922	131027964	131027963	+	High_confidence	4	4	9	0.334188	2.947703	chr3	131027917	131028012	SINE|MIR|MIR3	+	chr3	131027728	131152703	STRG.77865.11	+	131027728,131080422,131109802,131132744,131133245,131133829,131152387,131152630	131029878,131080588,131109921,131132809,131133355,131133956,131152537,131152703	0.555556
testis_male_adult_54_years	chr6	10074116	10074117	10074116	-	High_confidence	93	93	96	3.564673	5.328370	chr6	10073719	10075241	LTR|ERV1|LTR12C	-	chr6	10060436	10074933	STRG.135597.3	-	10060436,10073197	10060766,10074933	0.968750
testis_male_adult_54_years	chr17	14834716	14834734	14834733	+	High_confidence	3	3	11	0.408452	3.095795	chr17	14834325	14834951	LTR|ERV1|LTR12D	+	chr17	14834637	14844151	STRG.313500.3	+	14834637,14837940	14834942,14844151	0.727273
testis_male_adult_54_years	chr22	29550778	29550834	29550826	-	RAMPAGE_only	2	2	12	0.445584	3.418296	chr22	29550799	29551148	DNA|hAT-Charlie|MER113	+	chr22	29508330	29549157	THOC5|ENST00000358079.8	-	29508330,29511105,29512020,29517028,29517262,29519005,29520007,29520997,29525837,29528077,29528425,29528936,29531830,29536623,29539329,29542858,29543414,29544459,29549051	29508520,29511296,29512136,29517116,29517366,29519120,29520104,29521099,29525946,29528177,29528466,29529239,29531963,29536738,29539476,29542956,29543542,29544603,29549157	1.000000
testis_male_adult_54_years	chr5	99410256	99410257	99410256	-	High_confidence	15	15	19	0.705508	3.683542	chr5	99409838	99410830	LTR|ERV1|LTR12D	-	chr5	99409548	99410306	STRG.122996.1	-	99409548	99410306	0.842105
testis_male_adult_54_years	chr2	177476670	177476713	177476712	+	RAMPAGE_only	17	17	67	2.487845	5.416690	chr2	177475927	177477423	LINE|L1|L1MB7	-	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.895522
testis_male_adult_54_years	chr19	51354384	51354412	51354411	-	High_confidence	3	3	17	0.631244	4.000000	chr19	51354373	51354482	SINE|MIR|MIR3	-	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.941176
testis_male_adult_54_years	chr4	153248494	153248507	153248494	-	High_confidence	35	36	97	3.601805	5.115540	chr4	153248295	153248499	SINE|MIR|MIR	-	chr4	153246843	153248497	STRG.106329.1	-	153246843,153248419	153247048,153248497	0.824742
testis_male_adult_54_years	chr7	142706798	142706861	142706847	+	High_confidence	14	14	35	1.299620	4.743289	chr7	142705071	142708422	LTR|ERV1|MER41-int	+	chr7	142706816	142710570	STRG.175700.3	+	142706816,142707902,142710353	142707017,142709185,142710570	0.714286
testis_male_adult_54_years	chr10	90076260	90076292	90076275	-	High_confidence	13	14	38	1.411016	4.553652	chr10	90072229	90077090	LINE|L1|L1MA3	-	chr10	90075713	90076275	STRG.222789.1	-	90075713	90076275	0.868421
testis_male_adult_54_years	chr19	51027651	51027678	51027667	-	High_confidence	54	57	189	7.017950	6.700080	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.888889
testis_male_adult_54_years	chr18	80148048	80148049	80148048	+	High_confidence	16	16	17	0.631244	4.000000	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.764706
testis_male_adult_54_years	chr15	42492811	42492842	42492811	+	High_confidence	25	25	90	3.341881	5.864380	chr15	42492767	42492966	LINE|RTE-BovB|MamRTE1	+	chr15	42492870	42531545	SNAP23|ENST00000563765.5	+	42492870,42511832,42512954,42513335,42515236,42528261,42529674,42531412	42492945,42511903,42512996,42513447,42515354,42528420,42529819,42531545	0.744444
testis_male_adult_54_years	chr15	26244854	26244922	26244854	-	High_confidence	13	13	47	1.745205	5.341823	chr15	26244669	26245170	LTR|ERV1|LTR12F	-	chr15	26241886	26244932	STRG.290212.2	-	26241886,26244648	26242166,26244932	0.744681
testis_male_adult_54_years	chr12	51469058	51469071	51469058	+	RAMPAGE_only	7	7	24	0.891168	4.584963	chr12	51469022	51469155	LINE|L2|L2b	+	chr12	51461217	51495018	STRG.253383.7	+	51461217,51462309,51463613,51466404,51469613,51470391,51471286,51474341,51475044,51485786,51488698,51489699,51493703	51461291,51462456,51463714,51466512,51469788,51470525,51471532,51474447,51475206,51485900,51488860,51489951,51495018	0.583333
testis_male_adult_54_years	chr3	189596745	189596746	189596745	+	High_confidence	520	522	583	21.647962	5.850627	chr3	189595942	189597160	LTR|ERV1|LTR12C	+	chr3	189596727	189897197	STRG.86263.1	+	189596727,189623192,189737739,189738641,189808271,189864231,189866681,189867832,189868579,189869323,189872858,189886393,189889339,189890788,189894205	189597238,189623317,189737868,189738774,189808526,189864418,189866797,189867942,189868716,189869406,189872995,189886551,189889484,189890882,189897197	0.963979
testis_male_adult_54_years	chr10	46370326	46370327	46370326	+	High_confidence	48	48	52	1.930865	5.078696	chr10	46370126	46370461	LTR|ERVK|LTR14A	+	chr10	46370346	46373563	FAM25BP|ENST00000624613.1	+	46370346,46371138,46373376	46370500,46371201,46373563	0.750000
testis_male_adult_54_years	chr13	77997881	77997898	77997897	+	High_confidence	2	2	6	0.222792	2.584963	chr13	77997705	77998024	LTR|ERVL-MaLR|MLT1I	+	chr13	77997909	77998280	STRG.271963.1	+	77997909	77998280	0.500000
testis_male_adult_54_years	chr3	19970560	19970588	19970578	+	RAMPAGE_only	9	9	21	0.779772	4.037401	chr3	19970315	19970700	DNA|TcMar-Tigger|Tigger12A	+	chr3	19975515	19984121	RAB5A|ENST00000473608.1	+	19975515,19976046,19978309,19983707	19975752,19976169,19978403,19984121	0.904762
testis_male_adult_54_years	chr7	15547747	15547748	15547747	-	High_confidence	7	8	9	0.334188	2.750000	chr7	15547309	15553333	LINE|L1|L1PA2	+	chr7	15394112	15547813	STRG.159325.3	-	15394112,15418557,15431004,15544771,15547563	15394179,15418653,15431108,15544923,15547813	0.777778
testis_male_adult_54_years	chr11	34050507	34050516	34050515	-	RAMPAGE_only	6	6	11	0.408452	3.121928	chr11	34050206	34050647	LINE|L2|L2a	+	chr11	34048237	34053239	STRG.233092.2	-	34048237,34052842	34052621,34053239	0.818182
testis_male_adult_54_years	chr8	5509092	5509116	5509115	-	High_confidence	15	16	39	1.448148	4.499598	chr8	5509107	5509294	LTR|ERVL-MaLR|MLT1G3	+	chr8	5506067	5509126	AC004944.1|ENST00000517807.1	-	5506067	5509126	0.846154
testis_male_adult_54_years	chr11	102374805	102374816	102374805	+	RAMPAGE_only	3	3	7	0.259924	2.807355	chr11	102369166	102375192	LINE|L1|L1PA2	-	chr11	102347373	102378663	BIRC2|ENST00000613397.4	+	102347373,102348597,102350843,102362895,102363667,102368305,102377495,102377856,102377989	102347845,102350749,102350943,102362974,102363716,102368548,102377750,102377898,102378663	0.571429
testis_male_adult_54_years	chr8	57213955	57214051	57214031	+	RAMPAGE_only	11	14	52	1.930865	5.288179	chr8	57213634	57214467	LTR|ERV1|MER50-int	-	chr8	57193619	57220236	STRG.184749.4	+	57193619,57193884,57210733,57212877,57215108,57218269,57220110	57193689,57206354,57212583,57214932,57217976,57219623,57220236	0.942308
testis_male_adult_54_years	chr12	81125688	81125724	81125709	-	High_confidence	5	10	26	0.965432	4.220176	chr12	81125377	81125820	LINE|L2|L2	+	chr12	81094374	81125845	AC078955.1|ENST00000547123.1	-	81094374,81104768,81117965,81124398,81125583	81094732,81104828,81118052,81124513,81125845	0.576923
testis_male_adult_54_years	chr2	135606006	135606028	135606016	+	RAMPAGE_only	2	2	9	0.334188	2.750000	chr2	135605983	135606461	LTR|ERVL-MaLR|MLT1H1	-	chr2	135531472	135606676	R3HDM1|ENST00000463230.5	+	135531472,135602499,135604805	135531633,135602708,135606676	0.777778
testis_male_adult_54_years	chr10	65570509	65570529	65570521	+	High_confidence	17	29	93	3.453277	5.986189	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570523	65660522	STRG.219847.1	+	65570523,65571424,65572934,65585484,65615635,65659794	65570759,65571579,65573056,65585802,65615761,65660522	0.752688
testis_male_adult_54_years	chr7	23904740	23904744	23904740	-	High_confidence	2	3	7	0.259924	2.584963	chr7	23904254	23904748	LTR|ERV1|LTR12C	-	chr7	23904262	23904747	STRG.160879.1	-	23904262,23904644	23904546,23904747	0.571429
testis_male_adult_54_years	chr13	39337095	39337156	39337126	-	High_confidence	17	17	143	5.309878	5.734466	chr13	39337076	39337291	DNA|TcMar-Tigger|Tigger3b	+	chr13	39284685	39337137	STRG.266667.1	-	39284685,39336270	39285024,39337137	0.972028
testis_male_adult_54_years	chr21	37219379	37219387	37219381	-	RAMPAGE_only	14	27	41	1.522412	4.663231	chr21	37219344	37219485	SINE|MIR|MIR	+	chr21	37218602	37221513	STRG.351506.1	-	37218602,37219566	37219393,37221513	0.902439
testis_male_adult_54_years	chr6	147743407	147743446	147743426	-	High_confidence	4	4	15	0.556980	3.807355	chr6	147743225	147743517	SINE|Alu|AluY	+	chr6	147741433	147743324	AL365271.1|ENST00000448909.1	-	147741433,147743172	147741884,147743324	0.866667
testis_male_adult_54_years	chr2	73072224	73072234	73072224	-	High_confidence	2	2	6	0.222792	2.584963	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.666667
testis_male_adult_54_years	chr15	49877248	49877311	49877298	+	High_confidence	33	33	130	4.827161	5.271028	chr15	49877200	49877310	DNA|hAT-Charlie|MER5A1	-	chr15	49877298	49883523	STRG.294319.1	+	49877298,49880318,49880584,49883165	49877428,49880472,49880693,49883523	0.961538
testis_male_adult_54_years	chr6	17015590	17015593	17015592	-	High_confidence	6	11	11	0.408452	3.277613	chr6	17015186	17016323	LTR|ERV1|LTR12D	-	chr6	17014748	17015548	STRG.136957.2	-	17014748	17015548	0.545455
testis_male_adult_54_years	chr8	101262918	101262938	101262937	-	High_confidence	136	148	421	15.632577	6.150411	chr8	101262833	101263182	LTR|ERVL-MaLR|MLT1K	-	chr8	101261540	101262903	AP001330.2|ENST00000523121.1	-	101261540,101262766	101262382,101262903	0.976247
testis_male_adult_54_years	chr6	110330093	110330111	110330110	-	RAMPAGE_only	3	3	7	0.259924	2.584963	chr6	110329832	110331376	LINE|L1|L1MD2	+	chr6	110245927	110358272	METTL24|ENST00000338882.4	-	110245927,110298921,110315341,110322773,110357954	110246260,110299150,110315481,110322872,110358272	0.714286
testis_male_adult_54_years	chr11	77686844	77686879	77686878	-	RAMPAGE_only	3	3	7	0.259924	2.584963	chr11	77686786	77686925	LINE|L2|L2c	+	chr11	77675078	77677061	RSF1|ENST00000529470.1	-	77675078,77676791	77675256,77677061	0.571429
testis_male_adult_54_years	chr2	130672530	130672531	130672530	+	RAMPAGE_only	8	8	8	0.297056	3.000000	chr2	130672181	130673739	LTR|ERVL-MaLR|MSTA-int	+	chr2	130611480	130691691	STRG.46606.1	+	130611480,130616789,130617064,130621465,130624063,130631408,130632489,130638618,130643982,130645736,130646128,130654920,130656548,130666961,130683330,130685133,130690152,130691534	130611942,130616904,130620151,130621603,130624134,130631453,130632656,130638689,130644053,130645781,130646310,130655041,130666724,130682240,130683528,130685356,130690323,130691691	0.625000
testis_male_adult_54_years	chr19	52345422	52345444	52345428	+	High_confidence	21	36	90	3.341881	5.966849	chr19	52345424	52345695	DNA|TcMar-Tigger|Tigger3	+	chr19	52345428	52367123	ZNF610|NM_173530.2	+	52345428,52347706,52349153,52353681,52354250,52365697	52345546,52347944,52349235,52353808,52354379,52367123	0.888889
testis_male_adult_54_years	chr20	33662212	33662229	33662212	-	High_confidence	19	20	62	2.302185	5.799590	chr20	33662113	33662220	SINE|MIR|MIRb	-	chr20	33657729	33662237	NECAB3|ENST00000478237.5	-	33657729,33657941,33658476,33658721,33659496,33659652,33659884,33660258,33662211	33657857,33658033,33658554,33658834,33659550,33659732,33660003,33660395,33662237	0.693548
testis_male_adult_54_years	chr10	11517456	11517485	11517484	-	RAMPAGE_only	10	15	48	1.782337	5.112996	chr10	11517446	11517546	LINE|L2|L2c	+	chr10	11460509	11526325	STRG.213928.4	-	11460509,11481769,11484970,11485168,11485816,11489101,11493118,11501100,11509594,11518534,11525385	11463849,11481922,11485070,11485234,11485911,11490880,11493228,11501208,11509675,11518574,11526325	0.687500
testis_male_adult_54_years	chr2	169840314	169840354	169840334	+	RAMPAGE_only	4	4	19	0.705508	4.058814	chr2	169839867	169840412	LTR|ERV1|LTR19B	-	chr2	169827507	170084131	UBR3|NM_172070.3	+	169827507,169872235,169875790,169877493,169878524,169891164,169895180,169896506,169905113,169906030,169914059,169923928,169924083,169925618,169926691,169926837,169927319,169928726,169932911,169942492,169946287,169947541,169949604,169958437,169986644,169994322,170001303,170006989,170008803,170015280,170029345,170040881,170055459,170061078,170061317,170073427,170079813,170080544,170081725	169828052,169872375,169875949,169877637,169878574,169891231,169895311,169896735,169905293,169906164,169914146,169923994,169924173,169925747,169926744,169926971,169927405,169928868,169933008,169942634,169946392,169947715,169950065,169958526,169986794,169994456,170001414,170007190,170008940,170015366,170029448,170040985,170055584,170061186,170061443,170073607,170080023,170080684,170084131	0.684211
testis_male_adult_54_years	chr12	7038369	7038374	7038373	+	High_confidence	147	149	243	9.023079	5.847188	chr12	7037242	7038779	LTR|ERV1|LTR12C	+	chr12	7038352	7041836	STRG.247581.8	+	7038352	7041836	0.958848
testis_male_adult_54_years	chr19	663390	663438	663437	+	High_confidence	2	2	10	0.371320	3.169925	chr19	663474	663667	LINE|L2|L2a	+	chr19	663481	669500	AC004156.1|ENST00000591866.2	+	663481,667211	664511,669500	0.900000
testis_male_adult_54_years	chr22	47631549	47631600	47631599	-	High_confidence	9	9	47	1.745205	4.655341	chr22	47631336	47631805	LTR|ERVL|MLT2B1	-	chr22	47621042	47631569	LINC00898|NR_033377.1	-	47621042,47622455,47624467,47627161,47627437,47629327	47621101,47622952,47625633,47627242,47627577,47631569	0.978723
testis_male_adult_54_years	chr2	23825174	23825203	23825192	-	RAMPAGE_only	6	6	22	0.816904	4.011365	chr2	23824939	23825243	SINE|Alu|AluJr	-	chr2	23751802	23832602	ATAD2B|ENST00000474583.5	-	23751802,23754178,23754646,23757417,23762208,23765505,23782868,23786026,23788511,23798137,23799824,23806170,23808988,23810315,23819746,23823257,23827797,23828848,23832207	23752087,23754307,23754774,23758101,23762346,23765628,23783028,23786223,23788647,23798323,23799993,23806228,23809176,23810502,23819882,23823569,23827860,23828939,23832602	0.636364
testis_male_adult_54_years	chr1	211271811	211271812	211271811	+	RAMPAGE_only	9	9	14	0.519848	3.546594	chr1	211271521	211272063	LINE|RTE-BovB|MamRTE1	+	chr1	211259974	211316385	RCOR3|ENST00000367005.8	+	211259974,211271231,211274209,211276256,211278116,211279237,211289177,211295675,211304082,211312719,211313423	211260164,211271309,211274262,211276418,211278241,211279316,211289396,211295753,211304140,211312961,211316385	0.714286
testis_male_adult_54_years	chr13	19239683	19239721	19239720	-	RAMPAGE_only	4	4	14	0.519848	3.521641	chr13	19239586	19239800	LTR|ERVL-MaLR|MLT1F	-	chr13	19201636	19227432	PSPC1P1|ENST00000442352.1	-	19201636,19204339,19208482,19219709,19227247	19201822,19204509,19208540,19219775,19227432	0.642857
testis_male_adult_54_years	chr11	12243192	12243205	12243204	+	High_confidence	26	26	63	2.339317	5.342769	chr11	12242949	12243215	LINE|RTE-X|L4_A_Mam	-	chr11	12242320	12259942	MICAL2|ENST00000534563.5	+	12242320,12256784,12258467,12259794	12242432,12256971,12258556,12259942	0.587302
testis_male_adult_54_years	chr19	45632633	45632676	45632666	-	High_confidence	22	30	70	2.599241	5.680847	chr19	45632503	45632628	DNA|hAT-Charlie|Charlie10	-	chr19	45621553	45632662	EML2|ENST00000586902.5	-	45621553,45624718,45626704,45629950,45632520	45621637,45624818,45626839,45630046,45632662	0.871429
testis_male_adult_54_years	chr7	101221653	101221656	101221655	+	RAMPAGE_only	6	9	10	0.371320	2.947703	chr7	101221517	101221678	LINE|L2|L2c	-	chr7	101220380	101224190	ZNHIT1|ENST00000485387.1	+	101220380,101223476,101223672,101223936	101222774,101223556,101223842,101224190	0.900000
testis_male_adult_54_years	chr15	92471706	92471707	92471706	+	High_confidence	24	25	27	1.002564	4.532665	chr15	92471642	92471799	DNA|hAT-Charlie|MER5B	-	chr15	92471676	92501117	C15orf32|NM_001301106.1	+	92471676,92472952,92500357	92472522,92473110,92501117	0.962963
testis_male_adult_54_years	chrX	17741348	17741401	17741348	+	RAMPAGE_only	3	4	14	0.519848	3.546594	chrX	17741088	17741396	DNA|hAT-Charlie|MER1B	-	chrX	17737724	17750114	STRG.359552.9	+	17737724,17738281,17746017,17749399,17749893	17738237,17744219,17746098,17749504,17750114	0.928571
testis_male_adult_54_years	chr11	60649176	60649180	60649176	+	RAMPAGE_only	3	3	7	0.259924	2.584963	chr11	60648916	60649608	LINE|L1|L1M4	+	chr11	60647280	60687149	LINC00301|ENST00000527161.5	+	60647280,60649167,60660721,60686909	60647592,60649310,60660775,60687149	0.714286
testis_male_adult_54_years	chr5	99410640	99410683	99410666	+	RAMPAGE_only	3	3	13	0.482716	3.418296	chr5	99409838	99410830	LTR|ERV1|LTR12D	-	chr5	99524714	99579367	STRG.122945.2	+	99524714,99532628,99533795,99534188,99537849,99549412,99577722	99526107,99532816,99533944,99534598,99537921,99549532,99579367	0.538462
testis_male_adult_54_years	chr14	70255628	70255632	70255628	+	High_confidence	131	131	221	8.206174	5.653540	chr14	70255023	70256182	LTR|ERV1|LTR12C	+	chr14	70255590	70275977	STRG.285167.3	+	70255590,70275295	70256189,70275977	0.963801
testis_male_adult_54_years	chr7	2230728	2230729	2230728	-	High_confidence	10	10	12	0.445584	3.584963	chr7	2230469	2230994	DNA|MULE-MuDR|Ricksha_c	-	chr7	1957628	2230661	STRG.157311.4	-	1957628,1980452,2002064,2014501,2069193,2149095,2213211,2215884,2216156,2217961,2219331,2222574,2225409,2229983,2230548	1957719,1980541,2004848,2014642,2069338,2149238,2213273,2215999,2216287,2218043,2219456,2222754,2225550,2230143,2230661	0.916667
testis_male_adult_54_years	chr9	92098040	92098083	92098082	-	RAMPAGE_only	5	6	11	0.408452	3.277613	chr9	92098026	92098485	LTR|ERV1|HERV-Fc1_LTR3	+	chr9	92031145	92115373	SPTLC1|ENST00000646534.1	-	92031145,92034809,92038247,92045998,92047171,92047612,92049959,92055404,92059178,92067965,92076797,92080015,92080869,92108739,92112454,92115313	92032558,92034883,92038365,92046053,92047268,92047708,92050067,92055494,92059308,92068098,92077035,92080088,92080963,92108834,92112562,92115373	0.909091
testis_male_adult_54_years	chr5	100399081	100399087	100399081	+	High_confidence	13	14	36	1.336752	5.014997	chr5	100399119	100399170	DNA|hAT-Ac|OldhAT1	+	chr5	100399069	100420467	STRG.123160.1	+	100399069,100401581,100407254,100419444,100420249	100399234,100401783,100407373,100419513,100420467	0.666667
testis_male_adult_54_years	chr22	26860552	26860555	26860552	+	High_confidence	206	210	305	11.325263	7.021644	chr22	26860295	26860755	LTR|ERV1|LTR12_	+	chr22	26860547	26877701	STRG.354338.1	+	26860547,26861981,26877328	26860763,26862105,26877701	0.563934
testis_male_adult_54_years	chr15	26186301	26186302	26186301	-	High_confidence	53	60	60	2.227921	5.191960	chr15	26186110	26186612	LTR|ERV1|LTR12F	-	chr15	26185482	26186487	STRG.290180.1	-	26185482	26186487	0.850000
testis_male_adult_54_years	chr1	49257814	49257818	49257817	-	RAMPAGE_only	5	5	9	0.334188	3.000000	chr1	49257178	49257818	LINE|L1|L1PA3	-	chr1	48866917	49851518	STRG.6475.1	-	48866917,49045583,49245769,49697312,49851395	48867230,49045800,49245864,49697437,49851518	0.555556
testis_male_adult_54_years	chr13	99496304	99496305	99496304	-	High_confidence	15	15	17	0.631244	3.807764	chr13	99496164	99496489	LTR|ERV1|MER51A	-	chr13	99491474	99496738	LINC01232|ENST00000626729.2	-	99491474,99493774,99496134,99496697	99492103,99495817,99496217,99496738	0.764706
testis_male_adult_54_years	chr8	55682464	55682513	55682512	+	High_confidence	40	41	125	4.641501	5.146537	chr8	55682499	55682992	LTR|ERVL|MLT2B1	-	chr8	55682485	55683132	STRG.184381.1	+	55682485	55683132	0.976000
testis_male_adult_54_years	chr19	35597874	35597875	35597874	+	High_confidence	13	13	13	0.482716	3.700440	chr19	35597863	35598363	LTR|ERV1|LTR36	-	chr19	35597894	35601501	LOC102723617|NR_110750.1	+	35597894,35600640,35601304	35597957,35600754,35601501	1.000000
testis_male_adult_54_years	chrX	39391784	39391812	39391791	-	High_confidence	3	3	12	0.445584	3.277613	chrX	39391476	39391860	LTR|ERVL|LTR16C	-	chrX	39367284	39391774	LINC01282|NR_110385.1	-	39367284,39367512,39376486,39376861,39379050,39391613	39367423,39367591,39376690,39376982,39379226,39391774	0.500000
testis_male_adult_54_years	chr18	70173987	70174018	70174017	-	RAMPAGE_only	3	4	10	0.371320	3.169925	chr18	70173820	70174163	LINE|L1|L1ME3A	+	chr18	70003803	70197686	RTTN|ENST00000583043.5	-	70003803,70005197,70006380,70017406,70020614,70024721,70028723,70030011,70030875,70047970,70051410,70054130,70057741,70059849,70065828,70073905,70075351,70086612,70087988,70092109,70092675,70109497,70114444,70121555,70127501,70128357,70134472,70135183,70139598,70142287,70145611,70148900,70149970,70150607,70166061,70166918,70168854,70176674,70188107,70190537,70193287,70196500,70197623	70004236,70005267,70006484,70017643,70020817,70024848,70028801,70030109,70030981,70048188,70051548,70054284,70057832,70060042,70065922,70073994,70075541,70086684,70088147,70092220,70092804,70109717,70114599,70121700,70127741,70128546,70134541,70135280,70139716,70142387,70145783,70149037,70150087,70150733,70166188,70167031,70169067,70176845,70188223,70190719,70193453,70196648,70197686	0.800000
testis_male_adult_54_years	chr5	66738204	66738205	66738204	+	RAMPAGE_only	4	4	6	0.222792	2.584963	chr5	66738111	66738429	LTR|ERVL-MaLR|MLT1I	-	chr5	66759727	67090203	STRG.119054.8	+	66759727,66788669,66870777,66899950,66916982,67054403,67090161	66759862,66788794,66870852,66899982,66917018,67054492,67090203	0.500000
testis_male_adult_54_years	chr12	24583123	24583139	24583123	-	RAMPAGE_only	2	2	6	0.222792	2.584963	chr12	24582699	24583118	DNA|TcMar-Tigger|Tigger2a	-	chr12	24331285	24562544	SOX5|ENST00000456299.2	-	24331285,24368562,24460595,24562337	24331396,24368639,24460776,24562544	0.666667
testis_male_adult_54_years	chr2	113980339	113980352	113980339	+	High_confidence	7	7	13	0.482716	2.918296	chr2	113980251	113980680	LTR|ERV1|MER65A	-	chr2	113979908	114007302	STRG.44273.5	+	113979908,114007018	113980404,114007302	0.846154
testis_male_adult_54_years	chr10	118759448	118759449	118759448	-	RAMPAGE_only	34	34	37	1.373884	4.499598	chr10	118759135	118760713	LTR|ERV1|LTR12C	-	chr10	118684555	118755249	CACUL1|ENST00000493518.5	-	118684555,118686597,118691264,118693701,118695140,118701305,118707491,118729294,118730283,118754395	118686168,118686641,118691403,118693749,118695230,118701408,118707587,118729397,118730410,118755249	0.513514
testis_male_adult_54_years	chr14	51857451	51857495	51857485	+	RAMPAGE_only	52	52	153	5.681198	6.533745	chr14	51857017	51857861	LINE|L2|L2c	-	chr14	51860303	51969800	GNG2|NM_001243774.1	+	51860303,51950649,51966558	51860790,51950765,51969800	0.712418
testis_male_adult_54_years	chr7	66886414	66886433	66886414	+	RAMPAGE_only	4	5	11	0.408452	3.027169	chr7	66885975	66886481	LINE|L2|L2a	+	chr7	66844938	66906297	STRG.165808.1	+	66844938,66847121,66848488,66858076,66863605,66880708,66882892,66884252,66885058,66886351,66886807,66893364,66893916,66896554,66899079,66900787,66904596	66845382,66847562,66848666,66858135,66863693,66881203,66882967,66884975,66885246,66886455,66890411,66893451,66894018,66898294,66899203,66904553,66906297	1.000000
testis_male_adult_54_years	chr8	32927967	32927984	32927967	+	High_confidence	94	94	317	11.770848	7.067675	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927946	33044802	STRG.182204.2	+	32927946,32996200,33041634,33044366	32928093,32996316,33041771,33044802	0.583596
testis_male_adult_54_years	chr7	47539258	47539278	47539277	-	High_confidence	15	18	45	1.670940	5.061482	chr7	47539244	47539410	DNA|hAT-Charlie|Chap1_Mam	-	chr7	47369280	47539277	TNS3|ENST00000450444.5	-	47369280,47396799,47400392,47400784,47411726,47413936,47415093,47424100,47428311,47435281,47437262,47439486,47442002,47481102,47506906,47529035,47539074	47369621,47396904,47400458,47400914,47411802,47413997,47415206,47424184,47428376,47435404,47437313,47439658,47442055,47481141,47506944,47529147,47539277	0.844444
testis_male_adult_54_years	chr2	173021490	173021520	173021490	+	RAMPAGE_only	10	10	41	1.522412	4.793664	chr2	173021442	173021610	SINE|Alu|AluYh3	+	chr2	173026625	173036795	RAPGEF4|ENST00000397085.3	+	173026625,173027080,173030163,173033913,173036124,173036627	173026697,173027259,173030254,173033964,173036212,173036795	0.707317
testis_male_adult_54_years	chr9	87042110	87042137	87042136	-	High_confidence	3	3	7	0.259924	2.807355	chr9	87041882	87047900	LINE|L1|L1PA3	+	chr9	87008450	87042126	LOC440173|NR_027471.1	-	87008450,87041870	87010210,87042126	0.571429
testis_male_adult_54_years	chrX	150421042	150421075	150421042	+	High_confidence	2	2	8	0.297056	2.807355	chrX	150417926	150421451	LINE|L1|L1PA2	-	chrX	150420998	150469982	MAMLD1|ENST00000358892.7	+	150420998,150445453,150462771,150469744	150421117,150445612,150462846,150469982	0.500000
testis_male_adult_54_years	chr4	175427958	175427967	175427958	-	High_confidence	2	2	7	0.259924	2.584963	chr4	175427746	175428951	LTR|ERV1|LTR12D	+	chr4	174979281	175428402	STRG.108923.1	-	174979281,174993815,175038568,175236580,175402970,175427725	174990145,174993902,175038723,175236698,175403107,175428402	0.714286
testis_male_adult_54_years	chr11	122882384	122882407	122882406	+	High_confidence	3	3	6	0.222792	2.584963	chr11	122881733	122882629	LINE|L1|L1ME3D	-	chr11	122882527	122905892	C11orf63|NM_199124.2	+	122882527,122885760,122903924,122905171	122882972,122886193,122904444,122905892	1.000000
testis_male_adult_54_years	chr17	21531937	21531980	21531952	+	High_confidence	29	29	88	3.267617	5.214407	chr17	21531340	21532290	DNA|TcMar-Tigger|Tigger17	+	chr17	21531871	21532776	STRG.315138.1	+	21531871	21532776	0.965909
testis_male_adult_54_years	chr1	174491815	174491837	174491815	-	High_confidence	2	2	13	0.482716	3.392747	chr1	174489857	174492165	LINE|L1|L1M1	-	chr1	174491321	174491853	STRG.19953.1	-	174491321	174491853	0.692308
testis_male_adult_54_years	chr5	109451654	109451696	109451695	+	High_confidence	18	23	50	1.856601	4.853661	chr5	109451578	109451735	LTR|ERVL-MaLR|MLT1K	+	chr5	109451692	109469840	STRG.124453.1	+	109451692,109455675,109466055,109468919	109451753,109455919,109466186,109469840	0.860000
testis_male_adult_54_years	chr2	144294476	144294494	144294493	-	High_confidence	3	3	6	0.222792	2.584963	chr2	144294264	144294524	LINE|L2|L2b	+	chr2	143945753	144294493	GTDC1|ENST00000409214.5	-	143945753,143951981,143952772,143957194,143970652,144007181,144141881,144145571,144208602,144211514,144235675,144294364	143947135,143952073,143952843,143957339,143970762,144007535,144142055,144145739,144208804,144211579,144235737,144294493	0.833333
testis_male_adult_54_years	chr3	114380866	114380867	114380866	-	RAMPAGE_only	9	9	10	0.371320	2.725481	chr3	114380802	114381001	SINE|MIR|MIR3	+	chr3	114338652	114383641	ZBTB20|ENST00000474710.5	-	114338652,114350273,114380216,114380776,114383615	114339426,114351878,114380404,114380940,114383641	0.900000
testis_male_adult_54_years	chr9	34482681	34482682	34482681	+	RAMPAGE_only	41	43	50	1.856601	4.901468	chr9	34481502	34483342	LTR|ERV1|LTR12C	-	chr9	34485045	34493328	DNAI1|ENST00000488369.1	+	34485045,34485436,34487945,34489173,34489322,34490011,34490368,34491494,34493193	34485240,34485517,34488018,34489201,34489449,34490124,34490488,34491554,34493328	0.720000
testis_male_adult_54_years	chr16	27632453	27632460	27632457	+	High_confidence	17	23	48	1.782337	5.191636	chr16	27632188	27632740	LTR|ERV1|MER72	-	chr16	27632463	27727873	KIAA0556|ENST00000567894.5	+	27632463,27648603,27654607,27677728,27681398,27698327,27699533,27701588,27703895,27708704,27721557,27727215	27632603,27648735,27654736,27677996,27681530,27698500,27699599,27701695,27703998,27708920,27721695,27727873	0.750000
testis_male_adult_54_years	chr8	29864617	29864668	29864643	+	High_confidence	7	7	56	2.079393	5.350562	chr8	29864404	29864991	LINE|L1|L1MC3	+	chr8	29864643	29871661	AC131254.3|ENST00000522967.1	+	29864643,29871152	29864698,29871661	0.571429
testis_male_adult_54_years	chr3	190965069	190965091	190965084	+	High_confidence	2	2	6	0.222792	2.584963	chr3	190964647	190965526	LINE|L1|L1HS	-	chr3	190965014	190965590	STRG.86343.1	+	190965014	190965590	0.833333
testis_male_adult_54_years	chr5	151669676	151669772	151669678	-	RAMPAGE_only	29	41	139	5.161350	6.064620	chr5	151669480	151669633	SINE|MIR|MIR1_Amn	-	chr5	151662487	151667654	SPARC|ENST00000520687.1	-	151662487,151664086,151666360,151667466	151663599,151664235,151666509,151667654	0.942446
testis_male_adult_54_years	chr18	35376399	35376419	35376418	+	High_confidence	7	7	18	0.668376	3.969816	chr18	35376293	35376479	SINE|MIR|MIR	-	chr18	35376469	35377494	STRG.326045.1	+	35376469	35377494	0.833333
testis_male_adult_54_years	chr9	79987956	79987987	79987964	+	RAMPAGE_only	2	2	11	0.408452	3.277613	chr9	79987732	79988279	LTR|ERVL|MER68	-	chr9	79975022	80034555	LINC01507|NR_121212.1	+	79975022,79975553,79989956,80030583,80034300	79975222,79975831,79990064,80030769,80034555	0.818182
testis_male_adult_54_years	chr4	178038612	178038639	178038621	-	High_confidence	4	6	20	0.742640	4.247928	chr4	178038539	178038737	LTR|ERVL-MaLR|MSTD	-	chr4	178021233	178038506	STRG.109261.1	-	178021233,178038392	178021506,178038506	0.600000
testis_male_adult_54_years	chr8	31177363	31177403	31177402	+	High_confidence	2	2	7	0.259924	2.807355	chr8	31177332	31177532	LTR|ERV1|MER51A	+	chr8	31177173	31182769	STRG.182507.1	+	31177173,31179091	31178147,31182769	0.857143
testis_male_adult_54_years	chr12	108531934	108531965	108531951	-	High_confidence	10	13	51	1.893733	5.235902	chr12	108531819	108531993	DNA|hAT-Charlie|MER20	+	chr12	108530222	108531968	SART3|ENST00000619503.4	-	108530222,108531203,108531363	108530310,108531280,108531968	0.843137
testis_male_adult_54_years	chr15	33018908	33018969	33018949	-	RAMPAGE_only	5	5	23	0.854036	4.277613	chr15	33018639	33020029	LTR|ERV1|LTR12C	-	chr15	32969069	33020314	STRG.291720.11	-	32969069,33008013,33018599	32969477,33008075,33020314	0.869565
testis_male_adult_54_years	chr15	48767980	48768030	48767996	-	RAMPAGE_only	12	12	62	2.302185	5.459346	chr15	48767825	48768118	DNA|TcMar-Tigger|Tigger16b	-	chr15	48738150	48810987	CEP152|ENST00000399334.7	-	48738150,48741600,48741946,48744239,48744895,48752348,48755902,48760134,48762390,48767059,48767334,48768218,48768955,48772486,48781195,48782138,48783972,48788800,48791236,48793320,48796009,48797300,48797660,48797947,48805562,48810960	48739288,48741704,48742100,48744343,48744992,48752469,48756553,48760266,48762672,48767192,48767463,48768328,48769081,48772691,48781359,48782230,48784120,48789001,48791376,48793461,48796160,48797579,48797730,48798051,48805656,48810987	0.903226
testis_male_adult_54_years	chr14	27845311	27845372	27845371	-	High_confidence	18	18	110	4.084521	5.133652	chr14	27845185	27846580	LTR|ERV1|LTR12C	+	chr14	27844660	27845833	STRG.278217.2	-	27844660	27845833	0.836364
testis_male_adult_54_years	chr12	79940597	79940623	79940622	+	RAMPAGE_only	4	4	10	0.371320	2.947703	chr12	79940413	79940640	LTR|Gypsy|MamGypLTR1a	+	chr12	79934900	79942712	PPP1R12A-AS1|ENST00000552885.2	+	79934900,79938727,79940361	79935658,79938852,79942712	0.800000
testis_male_adult_54_years	chr17	68052661	68052665	68052661	+	High_confidence	231	235	353	13.107600	5.138724	chr17	68051692	68053079	LTR|ERV1|LTR12C	+	chr17	68052668	68068817	STRG.321490.1	+	68052668,68068738	68053629,68068817	0.974504
testis_male_adult_54_years	chr5	78251493	78251526	78251525	-	RAMPAGE_only	5	5	12	0.445584	3.027169	chr5	78251258	78253343	LINE|L1|L1MA1	+	chr5	78002325	78294692	AP3B1|ENST00000519295.5	-	78002325,78015409,78020691,78034360,78039042,78089392,78100952,78110206,78113751,78116125,78128029,78129120,78141142,78156257,78162818,78165609,78175625,78175783,78177338,78181506,78216054,78225541,78227371,78228143,78240861,78267519,78294439	78003055,78015548,78020789,78034445,78039274,78089499,78101025,78110354,78113923,78116234,78128160,78129307,78141319,78156367,78162951,78165672,78175697,78175838,78177436,78181662,78216237,78225608,78227532,78228239,78240936,78267595,78294692	0.583333
testis_male_adult_54_years	chr7	101221507	101221536	101221521	+	RAMPAGE_only	3	3	9	0.334188	2.750000	chr7	101221517	101221678	LINE|L2|L2c	-	chr7	101220380	101224190	ZNHIT1|ENST00000485387.1	+	101220380,101223476,101223672,101223936	101222774,101223556,101223842,101224190	0.888889
testis_male_adult_54_years	chr11	70341910	70341913	70341912	+	High_confidence	3	4	7	0.259924	2.584963	chr11	70341355	70342292	LINE|L2|L2	-	chr11	70341872	70348261	PPFIA1|ENST00000528284.1	+	70341872,70343668,70348188	70342143,70343892,70348261	0.571429
testis_male_adult_54_years	chr5	166926369	166926370	166926369	-	High_confidence	55	55	56	2.079393	5.047459	chr5	166925926	166927511	LTR|ERV1|LTR12C	-	chr5	166905221	166926370	LINC01947|ENST00000523742.1	-	166905221,166907924,166925962	166905292,166908011,166926370	0.839286
testis_male_adult_54_years	chr2	125665129	125665130	125665129	-	High_confidence	26	28	32	1.188224	4.631616	chr2	125664718	125665394	LTR|ERV1|LTR12_	-	chr2	125664834	125665112	STRG.45478.1	-	125664834	125665112	0.718750
testis_male_adult_54_years	chr12	698248	698253	698252	-	RAMPAGE_only	5	8	18	0.668376	3.947703	chr12	697924	698510	LTR|ERV1|LTR10C	+	chr12	674800	684127	LINC02455|ENST00000541881.1	-	674800,681751,683994	675019,681895,684127	0.833333
testis_male_adult_54_years	chr1	84477913	84477928	84477913	-	RAMPAGE_only	3	3	10	0.371320	3.169925	chr1	84477411	84478013	LINE|L2|L2a	+	chr1	84476537	84479502	STRG.11331.1	-	84476537	84479502	0.500000
testis_male_adult_54_years	chr22	40433067	40433088	40433086	-	RAMPAGE_only	8	13	37	1.373884	5.003258	chr22	40432994	40433145	LTR|ERVL|MER21C	+	chr22	40410281	40436310	MRTFA|ENST00000614754.4	-	40410281,40416975,40417340,40418373,40420404,40420846,40423535,40424205,40429605,40431404,40435498,40436300	40411907,40417046,40417493,40419384,40420576,40421100,40423685,40424381,40429767,40431480,40435554,40436310	0.594595
testis_male_adult_54_years	chr11	5144389	5144427	5144396	-	RAMPAGE_only	5	5	32	1.188224	4.452820	chr11	5144230	5145619	LTR|ERV1|LTR12C	+	chr11	5121154	5124513	OR52A4P|ENST00000498233.5	-	5121154,5122632,5123442,5124467	5121907,5122778,5123511,5124513	0.625000
testis_male_adult_54_years	chr14	100574435	100574441	100574435	+	RAMPAGE_only	15	18	41	1.522412	4.869747	chr14	100574452	100574689	DNA|hAT-Charlie|MER102b	+	chr14	100573284	100575181	STRG.288648.1	+	100573284	100575181	0.951220
testis_male_adult_54_years	chr5	58937339	58937340	58937339	+	RAMPAGE_only	8	8	10	0.371320	3.321928	chr5	58937065	58937991	LINE|L1|L1M2	-	chr5	59039760	59063503	AC092343.1|ENST00000500224.2	+	59039760,59063084	59040070,59063503	0.500000
testis_male_adult_54_years	chr21	38121472	38121492	38121472	+	High_confidence	220	223	595	22.093547	6.681482	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.897479
testis_male_adult_54_years	chr1	179322456	179322516	179322456	+	RAMPAGE_only	4	5	16	0.594112	3.452820	chr1	179322375	179322519	SINE|Alu|AluSx3	-	chr1	179294319	179341310	SOAT1|ENST00000426956.1	+	179294319,179302676,179323436,179335505,179337836,179339437,179341027	179294401,179302802,179323495,179335657,179337896,179339545,179341310	1.000000
testis_male_adult_54_years	chr1	20028387	20028419	20028407	+	High_confidence	59	66	149	5.532670	6.191259	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028429	20091158	PLA2G5|ENST00000465698.5	+	20028429,20059631,20068872,20084820,20086082,20088824,20089788,20090567	20028709,20059692,20069032,20084870,20086227,20088943,20089895,20091158	0.684564
testis_male_adult_54_years	chr1	173637712	173637713	173637712	+	High_confidence	1409	1416	1697	63.013023	8.394009	chr1	173637250	173637824	LTR|ERV1|LTR10C	+	chr1	173637721	173705915	STRG.19894.13	+	173637721,173702912	173683892,173705915	0.938126
testis_male_adult_54_years	chr9	84409758	84409783	84409782	+	High_confidence	7	7	20	0.742640	4.021928	chr9	84409815	84410083	SINE|Alu|AluSz	+	chr9	84409510	84619516	STRG.205403.1	+	84409510,84412081,84497468,84521061,84538990,84552233,84557435,84577531,84578770,84583196,84584082,84611636,84611849,84615073,84619288	84409840,84412198,84497746,84521225,84539083,84552323,84558054,84577658,84578869,84583283,84584222,84611749,84611997,84615204,84619516	0.600000
testis_male_adult_54_years	chr6	12265366	12265378	12265377	-	High_confidence	10	11	16	0.594112	3.640224	chr6	12265287	12265698	LTR|ERVL-MaLR|MLT1B	+	chr6	12262969	12265375	STRG.135945.1	-	12262969,12265286	12263807,12265375	0.562500
testis_male_adult_54_years	chr18	73264461	73264502	73264501	-	High_confidence	7	7	44	1.633808	4.769329	chr18	73264307	73264608	SINE|Alu|AluY	+	chr18	73154057	73264498	LOC400655|NR_034133.1	-	73154057,73159540,73161823,73200652,73255812,73264239	73155935,73159664,73161973,73200789,73255918,73264498	0.931818
testis_male_adult_54_years	chr2	119734642	119734674	119734664	+	High_confidence	3	3	13	0.482716	3.251629	chr2	119734637	119734837	SINE|MIR|MIRc	+	chr2	119734643	119748360	STRG.44984.1	+	119734643,119748077	119735205,119748360	0.615385
testis_male_adult_54_years	chr4	147718171	147718183	147718171	+	RAMPAGE_only	7	7	28	1.039696	4.606739	chr4	147717960	147718380	LINE|CR1|L3	+	chr4	147732062	148072780	ARHGAP10|ENST00000336498.7	+	147732062,147822726,147822895,147847150,147857552,147864845,147866711,147875020,147879231,147881837,147906637,147909731,147913073,147939824,147946616,147955315,147965023,147966679,148023262,148046891,148063147,148064415,148071992	147732455,147822822,147822957,147847222,147857654,147864956,147866816,147875150,147879338,147881932,147906719,147909777,147913139,147939899,147946704,147955374,147965129,147966839,148023413,148047051,148063300,148064507,148072780	0.821429
testis_male_adult_54_years	chr1	111788812	111788835	111788812	-	RAMPAGE_only	18	20	49	1.819469	5.418296	chr1	111788716	111788880	SINE|MIR|MIR	+	chr1	111770661	111982796	KCND3|ENST00000369697.5	-	111770661,111777025,111780224,111780689,111786943,111981620	111776278,111777273,111780314,111780791,111787106,111982796	0.775510
testis_male_adult_54_years	chr8	99893269	99893291	99893276	-	High_confidence	266	278	607	22.539131	5.822670	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.943987
testis_male_adult_54_years	chr13	46467835	46467872	46467835	-	High_confidence	12	12	35	1.299620	4.743289	chr13	46467669	46468268	LTR|ERV1|HERVE-int	+	chr13	46455137	46467836	LINC01198|ENST00000650465.1	-	46455137,46457839,46460944,46464674,46465842,46466608,46467738	46455511,46457913,46461085,46464819,46465987,46466709,46467836	0.857143
testis_male_adult_54_years	chr3	150899495	150899508	150899495	+	RAMPAGE_only	2	2	6	0.222792	2.584963	chr3	150899284	150899532	LTR|ERVL|LTR33	-	chr3	150905163	150905687	STRG.80410.1	+	150905163	150905687	0.666667
testis_male_adult_54_years	chr22	33857945	33857969	33857956	-	RAMPAGE_only	7	7	27	1.002564	4.392747	chr22	33857885	33858684	LTR|ERV1|LTR17	-	chr22	33558007	33920421	STRG.355504.3	-	33558007,33604434,33626243,33650366,33761370,33765843,33856739,33919994	33565019,33604558,33626326,33650668,33761558,33765953,33856802,33920421	0.518519
testis_male_adult_54_years	chr12	132782312	132782347	132782346	-	RAMPAGE_only	3	3	16	0.594112	3.625000	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132768914	132794801	STRG.264186.14	-	132768914,132774156,132775140,132776633,132776957,132777665,132780797,132782295,132786338,132786692,132789026,132791215	132773294,132774320,132775305,132776756,132777090,132777805,132780914,132784307,132786555,132786787,132789290,132794801	0.875000
testis_male_adult_54_years	chr9	33815167	33815171	33815170	+	RAMPAGE_only	34	34	73	2.710637	5.423850	chr9	33814859	33815461	LINE|L1|L1MC3	+	chr9	33817183	33920403	UBE2R2|NM_017811.3	+	33817183,33886880,33900173,33911963,33917017	33817934,33886967,33900271,33912098,33920403	0.890411
testis_male_adult_54_years	chr12	9065161	9065181	9065173	+	High_confidence	19	19	63	2.339317	5.380063	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.619048
testis_male_adult_54_years	chr10	2070409	2070435	2070434	+	High_confidence	13	16	26	0.965432	4.303509	chr10	2070207	2071082	LINE|L1|L1M4b	-	chr10	2070422	2071017	STRG.212006.1	+	2070422	2071017	0.769231
testis_male_adult_54_years	chr18	31446527	31446572	31446571	+	RAMPAGE_only	5	5	10	0.371320	2.947703	chr18	31446330	31446646	SINE|Alu|AluYf1	+	chr18	31447768	31478702	DSG3|NM_001944.2	+	31447768,31456439,31456992,31458444,31459032,31459844,31460832,31461226,31464110,31465317,31466529,31469088,31472283,31472724,31474120,31475645	31447925,31456475,31457124,31458600,31459177,31460011,31460961,31461412,31464382,31465457,31466754,31469349,31472423,31472788,31474404,31478702	0.900000
testis_male_adult_54_years	chr9	121281891	121281892	121281891	+	RAMPAGE_only	13	13	19	0.705508	4.058814	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.631579
testis_male_adult_54_years	chrX	65524590	65524618	65524611	-	RAMPAGE_only	2	3	12	0.445584	3.277613	chrX	65524525	65524675	SINE|MIR|MIR3	+	chrX	65512582	65534754	STRG.363694.7	-	65512582,65514822,65517986,65523559,65524055,65524964,65528259,65529211,65529593,65531356,65532560,65533609,65534479	65512901,65514973,65522493,65523707,65524614,65525050,65528369,65529258,65529878,65531438,65532630,65533735,65534754	0.916667
testis_male_adult_54_years	chr4	44016753	44016801	44016757	-	High_confidence	3	3	16	0.594112	3.323231	chr4	44016424	44016724	LTR|ERV1|MER51A	-	chr4	44015677	44017130	STRG.93852.1	-	44015677	44017130	0.875000
testis_male_adult_54_years	chr9	15229587	15229614	15229613	-	RAMPAGE_only	4	4	9	0.334188	3.169925	chr9	15229278	15229615	LTR|ERV1|LTR37B	+	chr9	15171928	15232444	TTC39B|ENST00000507285.5	-	15171928,15175018,15177696,15182306,15185279,15186943,15187970,15189573,15189724,15190553,15191189,15192589,15199860,15203822,15210087,15211265,15214138,15224339,15225916,15232231	15172109,15175135,15177814,15182415,15185406,15187035,15188132,15189633,15189792,15190662,15191255,15192695,15199925,15203890,15210164,15211397,15214249,15224505,15226012,15232444	1.000000
testis_male_adult_54_years	chr3	15756644	15756652	15756644	+	High_confidence	5	6	9	0.334188	3.000000	chr3	15756542	15756684	SINE|MIR|MIRc	+	chr3	15756337	15757044	STRG.63682.1	+	15756337	15757044	0.555556
testis_male_adult_54_years	chr3	32940748	32940749	32940748	+	High_confidence	264	265	271	10.062775	5.789175	chr3	32939500	32941155	LTR|ERV1|LTR12C	+	chr3	32940761	32956349	STRG.65475.2	+	32940761,32953371	32941123,32956349	0.845018
testis_male_adult_54_years	chr12	53464795	53464842	53464815	+	RAMPAGE_only	6	6	32	1.188224	4.453881	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.812500
testis_male_adult_54_years	chr20	8600707	8600739	8600707	+	High_confidence	7	7	42	1.559544	4.050000	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.880952
testis_male_adult_54_years	chr16	67183376	67183377	67183376	-	High_confidence	5	5	8	0.297056	2.807355	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67179480	67183941	STRG.308490.6	-	67179480,67179814,67180040,67181557,67183261	67179562,67179958,67180666,67181697,67183941	0.625000
testis_male_adult_54_years	chr15	90511304	90511315	90511314	+	High_confidence	8	8	17	0.631244	3.202820	chr15	90510776	90511739	LTR|ERV1|LTR12D	+	chr15	90511139	90512313	STRG.299345.1	+	90511139	90512313	0.882353
testis_male_adult_54_years	chr4	177728726	177728757	177728735	+	High_confidence	52	72	236	8.763155	5.702768	chr4	177728388	177728944	LTR|ERVL|LTR18B	+	chr4	177728756	177990750	LINC01098|ENST00000507870.1	+	177728756,177732366,177960761,177966674,177975803,177990478	177729017,177732479,177960905,177966778,177975943,177990750	0.889831
testis_male_adult_54_years	chr7	10973307	10973336	10973307	+	High_confidence	8	8	29	1.076828	4.606739	chr7	10972816	10973509	LTR|ERV1|MER51A	+	chr7	10973871	11103655	PHF14|ENST00000403050.7	+	10973871,10974834,10982371,10990702,11013746,11022867,11028680,11035639,11036417,11036984,11038759,11040671,11042682,11051611,11061790,11061963,11102485	10974324,10974945,10983159,10990847,11013906,11022979,11028818,11035786,11036688,11037091,11038855,11040775,11042814,11051780,11061841,11062085,11103655	0.758621
testis_male_adult_54_years	chr10	123559963	123559967	123559966	+	High_confidence	71	71	104	3.861729	5.951438	chr10	123559841	123560044	DNA|hAT-Blackjack|MER63A	+	chr10	123559958	123562226	STRG.227345.2	+	123559958,123561827	123560196,123562226	0.865385
testis_male_adult_54_years	chr16	74563286	74563287	74563286	-	RAMPAGE_only	6	6	8	0.297056	2.750000	chr16	74562768	74563446	LTR|ERV1|MER57A-int	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	0.625000
testis_male_adult_54_years	chr1	24066557	24066590	24066578	-	High_confidence	18	27	72	2.673505	5.433542	chr1	24066515	24066692	SINE|MIR|MIRb	+	chr1	24056034	24066579	MYOM3|ENST00000338909.9	-	24056034,24058923,24061059,24061272,24061945,24063125,24063491,24064071,24065890,24066106	24057627,24058979,24061082,24061309,24062109,24063234,24063530,24064159,24066001,24066579	0.986111
testis_male_adult_54_years	chr5	99410338	99410368	99410338	+	High_confidence	4	5	14	0.519848	3.546594	chr5	99409838	99410830	LTR|ERV1|LTR12D	-	chr5	99409670	99411203	STRG.122945.1	+	99409670	99411203	0.571429
testis_male_adult_54_years	chr3	42770599	42770600	42770599	+	High_confidence	579	585	618	22.947583	5.769009	chr3	42769529	42771022	LTR|ERV1|LTR12C	+	chr3	42770611	42773635	LOC729083|NR_122070.1	+	42770611,42773204	42771077,42773635	0.959547
testis_male_adult_54_years	chr6	36329460	36329480	36329465	-	High_confidence	4	4	17	0.631244	3.690117	chr6	36329353	36329508	SINE|MIR|MIR	-	chr6	36325327	36328727	STRG.140687.1	-	36325327,36326509,36327029,36328597	36325414,36326753,36327094,36328727	1.000000
testis_male_adult_54_years	chr7	107889069	107889070	107889069	+	High_confidence	111	112	139	5.161350	4.136230	chr7	107887805	107889482	LTR|ERV1|LTR12C	+	chr7	107889076	107890358	STRG.170717.1	+	107889076	107890358	0.978417
testis_male_adult_54_years	chr15	51077625	51077636	51077625	-	High_confidence	7	7	14	0.519848	3.392747	chr15	51077571	51078015	LTR|ERV1|MER61B	+	chr15	51039044	51077741	STRG.294519.1	-	51039044,51043650,51070167	51043602,51069606,51077741	0.928571
testis_male_adult_54_years	chr3	27216565	27216593	27216585	+	High_confidence	25	28	73	2.710637	4.748866	chr3	27216391	27216862	LTR|ERVL-MaLR|MLT1G1	+	chr3	27216585	27221329	STRG.65072.1	+	27216585,27220659	27216680,27221329	0.931507
testis_male_adult_54_years	chr20	8022060	8022061	8022060	+	RAMPAGE_only	10	10	13	0.482716	3.584963	chr20	8021868	8022239	LTR|ERVL-MaLR|THE1B	+	chr20	8019901	8027956	AL021396.1|ENST00000457707.1	+	8019901,8020390,8022058,8022380,8022556,8023270,8027660	8020104,8021261,8022155,8022449,8022767,8023452,8027956	0.692308
testis_male_adult_54_years	chrX	107245219	107245328	107245311	-	High_confidence	20	21	101	3.750333	5.367342	chrX	107244866	107245402	DNA|MULE-MuDR|Ricksha_c	-	chrX	107069309	107245918	STRG.367198.3	-	107069309,107088435,107113396,107115351,107115861,107116649,107118765,107147742,107150855,107153171,107153453,107154095,107167648,107175088,107244958	107069402,107088839,107113468,107115556,107116054,107116766,107124332,107147809,107150967,107153306,107153503,107154246,107167784,107175193,107245918	0.980198
testis_male_adult_54_years	chrX	72305913	72305914	72305913	-	High_confidence	7117	8124	8264	306.858940	6.850163	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144885.1	-	72301637,72302809,72305301,72305824	72302244,72302934,72305422,72305914	0.892425
testis_male_adult_54_years	chr13	89163160	89163189	89163178	-	High_confidence	5	5	18	0.668376	3.852169	chr13	89163138	89163445	DNA|hAT-Charlie|MER1B	+	chr13	89141934	89163285	STRG.273674.1	-	89141934,89159465,89162739,89163105	89142131,89159648,89162881,89163285	0.777778
testis_male_adult_54_years	chr6	18522712	18522758	18522745	+	High_confidence	14	15	78	2.896297	5.349524	chr6	18522549	18522918	LTR|ERVL-MaLR|THE1B	+	chr6	18522746	18674001	MIR548A1HG|ENST00000637804.1	+	18522746,18535847,18536171,18590974,18665941,18673869	18522835,18536053,18536334,18591092,18666017,18674001	0.653846
testis_male_adult_54_years	chr11	66715235	66715282	66715235	-	RAMPAGE_only	6	6	18	0.668376	3.572469	chr11	66714958	66715210	DNA|hAT-Charlie|Charlie10	-	chr11	66685251	66721240	SPTBN2|ENST00000529997.5	-	66685251,66686993,66687426,66687867,66688003,66688168,66688652,66689095,66689804,66690038,66691283,66692535,66692969,66693185,66693771,66694138,66696276,66698638,66698991,66699405,66700525,66701583,66704597,66705683,66707515,66708140,66708901,66710581,66710916,66713630,66714090,66714315,66715221,66715829,66721083	66686440,66687167,66687647,66687918,66688079,66688311,66688849,66689180,66689943,66690283,66691658,66692740,66693100,66693446,66693861,66694363,66696540,66698785,66699082,66699608,66701282,66701721,66705468,66705837,66707818,66708299,66709019,66710769,66711029,66713746,66714171,66714407,66715395,66715981,66721240	0.833333
testis_male_adult_54_years	chr11	15561818	15561819	15561818	+	High_confidence	32	33	35	1.299620	4.557854	chr11	15560740	15562134	LTR|ERV1|LTR12C	+	chr11	15561796	15567089	STRG.230879.2	+	15561796,15567020	15562228,15567089	0.800000
testis_male_adult_54_years	chr8	25833438	25833441	25833440	-	High_confidence	48	58	70	2.599241	5.155344	chr8	25833424	25833519	DNA|hAT-Blackjack|MER94B	+	chr8	25832475	25833426	STRG.181618.1	-	25832475,25833246	25832932,25833426	0.671429
testis_male_adult_54_years	chr1	17755299	17755373	17755334	+	High_confidence	41	59	155	5.755462	5.970006	chr1	17755152	17755695	LTR|ERVL|LTR41	+	chr1	17755312	17827063	ACTL8|NM_030812.2	+	17755312,17822984,17825766	17755504,17823356,17827063	0.903226
testis_male_adult_54_years	chr12	121203568	121203588	121203577	-	RAMPAGE_only	3	3	11	0.408452	3.277613	chr12	121203331	121203576	LTR|ERVL-MaLR|MLT1O	-	chr12	121162158	121210265	STRG.262520.1	-	121162158,121203497,121209848	121162417,121203600,121210265	0.909091
testis_male_adult_54_years	chr6	104936982	104937026	104937025	+	High_confidence	28	33	95	3.527541	6.069753	chr6	104936824	104937119	SINE|Alu|AluJb	-	chr6	104936615	105078602	LIN28B|ENST00000635857.1	+	104936615,104936849,104950460,104958098,105026297,105078413	104936649,104937116,104950509,104958286,105026482,105078602	0.800000
testis_male_adult_54_years	chr10	74529325	74529338	74529325	-	High_confidence	8	9	19	0.705508	4.142664	chr10	74528479	74529532	LINE|L1|L1MB4	+	chr10	74506497	74529324	LOC102723439|NR_120673.1	-	74506497,74508371,74509391,74527765,74529292	74506593,74508415,74509509,74527992,74529324	0.947368
testis_male_adult_54_years	chr13	45370061	45370069	45370061	+	RAMPAGE_only	4	4	9	0.334188	3.000000	chr13	45369932	45370316	LINE|L2|L2a	+	chr13	45378529	45390879	TPT1-AS1|ENST00000520585.5	+	45378529,45379194,45379898,45383090,45383759,45389734,45390757	45378671,45379335,45380001,45383235,45383838,45389820,45390879	0.555556
testis_male_adult_54_years	chr15	97875618	97875650	97875619	-	High_confidence	51	84	349	12.959072	6.497764	chr15	97875560	97876737	LTR|ERV1|LTR12D	+	chr15	97700789	97876074	STRG.301022.7	-	97700789,97705460,97705936,97743329,97752908,97755742,97758489,97873952	97704108,97705527,97706066,97743483,97753050,97757775,97758661,97876074	0.968481
testis_male_adult_54_years	chr2	38515660	38515746	38515660	-	High_confidence	4	4	49	1.819469	4.868107	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.612245
testis_male_adult_54_years	chr1	147517502	147517537	147517502	-	High_confidence	2	2	12	0.445584	3.584963	chr1	147517442	147518143	LTR|ERV1|LTR12_	-	chr1	147382191	147517875	LINC00624|NR_038423.2	-	147382191,147514337,147515520,147517442	147384863,147514448,147515676,147517875	0.666667
testis_male_adult_54_years	chrX	100703117	100703142	100703141	-	RAMPAGE_only	7	7	15	0.556980	3.773557	chrX	100703070	100703372	SINE|Alu|AluJb	+	chrX	100674493	100724913	STRG.366413.10	-	100674493,100681226,100685989,100686678,100687066,100688350,100689855,100690074,100690562,100691107,100700896,100701219,100701457,100701927	100679567,100681335,100686151,100686781,100687245,100688443,100689959,100690165,100690638,100691209,100700999,100701329,100701673,100724913	1.000000
testis_male_adult_54_years	chr5	61735670	61735703	61735677	-	High_confidence	8	8	34	1.262488	4.801970	chr5	61735667	61735848	DNA|hAT-Charlie|MER5A	+	chr5	61732773	61735668	C5orf64-AS1|ENST00000506550.1	-	61732773,61735376	61733746,61735668	0.852941
testis_male_adult_54_years	chr5	894574	894598	894597	+	High_confidence	7	7	17	0.631244	4.000000	chr5	894447	894691	SINE|MIR|MIR	-	chr5	893641	908074	TRIP13|ENST00000513435.1	+	893641,894786,896664,900493,901340,904147,907129,907987	893720,894952,896794,900549,901431,904220,907193,908074	0.764706
testis_male_adult_54_years	chr12	79913880	79913911	79913889	-	High_confidence	63	77	274	10.174171	5.094877	chr12	79913211	79913843	LINE|L1|L1M5	-	chr12	79773562	79913911	PPP1R12A|NM_001143886.1	-	79773562,79778549,79781814,79786373,79788647,79790466,79793862,79795637,79796781,79797194,79798493,79805591,79806165,79807225,79808482,79809794,79817393,79820773,79821077,79822115,79828319,79832331,79845301,79872807,79913796	79776015,79778600,79781862,79786478,79788783,79790483,79793928,79795759,79796950,79797395,79798584,79805768,79806333,79807330,79808577,79810010,79817518,79820931,79821166,79822190,79828464,79832491,79845420,79872938,79913911	0.948905
testis_male_adult_54_years	chr7	133370551	133370552	133370551	+	RAMPAGE_only	14	14	20	0.742640	4.037401	chr7	133370157	133370732	LTR|ERV1|MER4A1_	-	chr7	133396138	133630138	EXOC4|ENST00000486409.6	+	133396138,133475327,133480049,133630044	133396414,133475473,133480138,133630138	0.550000
testis_male_adult_54_years	chr6	11420803	11420819	11420818	+	RAMPAGE_only	4	4	8	0.297056	3.000000	chr6	11418965	11422258	LINE|L1|L1M3e	+	chr6	11418428	11421250	STRG.136103.1	+	11418428	11421250	0.875000
testis_male_adult_54_years	chrX	119080900	119081077	119081076	-	RAMPAGE_only	47	54	240	8.911683	4.501135	chrX	119080982	119081289	SINE|Alu|AluY	+	chrX	119076233	119127846	STRG.367773.1	-	119076233,119083014,119085382,119086545,119093666,119096493,119104991,119108336,119109075,119116495,119123581,119127726	119081504,119083120,119085546,119089746,119093775,119096691,119105147,119108471,119109202,119116664,119123652,119127846	0.995833
testis_male_adult_54_years	chr10	122344801	122344843	122344820	-	High_confidence	10	18	45	1.670940	4.685972	chr10	122344720	122344772	LTR|ERV1|MER66C	-	chr10	122344552	122344795	STRG.227197.1	-	122344552	122344795	0.800000
testis_male_adult_54_years	chr6	143698983	143698999	143698988	+	RAMPAGE_only	2	2	7	0.259924	2.584963	chr6	143698827	143699156	LINE|L2|L2	+	chr6	143678172	143712336	PHACTR2|ENST00000545919.1	+	143678172,143712015	143678209,143712336	0.571429
testis_male_adult_54_years	chr6	2968829	2968832	2968829	-	RAMPAGE_only	5	5	14	0.519848	3.521641	chr6	2968783	2968841	LINE|L1|HAL1	-	chr6	2948162	2970743	SERPINB6|ENST00000644178.1	-	2948162,2948913,2953043,2954591,2955523,2959167,2966399	2948699,2949069,2953186,2954709,2955670,2959342,2970743	1.000000
testis_male_adult_54_years	chr1	234660296	234660319	234660311	+	RAMPAGE_only	14	16	33	1.225356	4.542748	chr1	234659950	234660648	LTR|ERV1|MER50B	+	chr1	234646288	234660924	AL160408.1|ENST00000417805.1	+	234646288,234655225,234656107,234660133	234646505,234655464,234656233,234660924	0.818182
testis_male_adult_54_years	chr9	452100	452109	452108	+	RAMPAGE_only	3	3	6	0.222792	2.584963	chr9	452151	452338	DNA|hAT-Charlie|MER5A	+	chr9	366250	465255	DOCK8|ENST00000382329.1	+	366250,368017,370229,371427,372184,376209,376976,379770,382512,386330,390470,396784,399145,404917,406929,414781,418067,420400,420948,422047,426884,428361,429701,432165,433874,434782,439244,441285,441874,443426,446369,449783,452010,463516,464158	366552,368300,370300,371566,372286,376305,377211,379935,382685,386426,390566,396934,399259,405073,407069,414951,418207,420583,421078,422135,426981,428496,429854,432324,433975,434975,439388,441417,442009,443516,446606,449927,452117,463687,465255	1.000000
testis_male_adult_54_years	chr17	7293481	7293537	7293505	-	High_confidence	16	17	74	2.747769	5.545677	chr17	7293490	7293550	LINE|RTE-BovB|MamRTE1	-	chr17	7288262	7293935	YBX2|ENST00000571834.5	-	7288262,7288748,7289529,7289967,7290250,7291092,7293474,7293827	7288643,7288838,7289725,7290071,7290535,7292059,7293538,7293935	0.918919
testis_male_adult_54_years	chr7	157307890	157307910	157307901	-	High_confidence	3	3	12	0.445584	3.459432	chr7	157307767	157308147	LTR|ERV1|MER41B	-	chr7	157302059	157307879	STRG.177943.1	-	157302059,157307521	157302076,157307879	0.583333
testis_male_adult_54_years	chr12	95857457	95857458	95857457	+	High_confidence	32	32	36	1.336752	3.972163	chr12	95857404	95857614	LTR|ERV1|MER51A	+	chr12	95857471	95866451	STRG.259434.2	+	95857471,95861167,95865323,95866004	95857678,95861293,95865388,95866451	0.888889
testis_male_adult_54_years	chr1	186977469	186977532	186977510	+	RAMPAGE_only	3	3	22	0.816904	4.004886	chr1	186977440	186977516	LINE|L2|L2c	+	chr1	186828952	186988981	PLA2G4A|ENST00000367466.3	+	186828952,186854285,186870434,186893010,186894097,186906964,186911247,186932762,186939007,186939979,186946636,186946868,186950656,186956101,186965408,186977592,186979314,186988376	186829035,186854387,186870516,186893159,186894211,186907002,186911389,186932899,186939230,186940094,186946774,186946961,186950728,186956344,186965593,186977788,186979472,186988981	0.863636
testis_male_adult_54_years	chr7	154059433	154059434	154059433	-	High_confidence	11	11	13	0.482716	3.392747	chr7	154059367	154059965	LTR|ERV1|HERVE-int	+	chr7	154055584	154059561	AC006019.1|ENST00000425591.1	-	154055584,154057432	154055925,154059561	1.000000
testis_male_adult_54_years	chr13	111588200	111588201	111588200	+	High_confidence	19	19	22	0.816904	4.277613	chr13	111587853	111588246	LTR|ERVL-MaLR|MLT1C	-	chr13	111588200	111589941	AL359649.1|ENST00000607406.1	+	111588200	111589941	0.636364
testis_male_adult_54_years	chr4	2763026	2763061	2763060	+	High_confidence	121	134	178	6.609498	5.102044	chr4	2762353	2763411	LTR|ERV1|LTR12E	-	chr4	2763068	2775710	STRG.88029.2	+	2763068,2775193	2763849,2775710	0.977528
testis_male_adult_54_years	chr2	219222057	219222083	219222057	-	High_confidence	6	8	18	0.668376	4.087463	chr2	219221951	219222030	SINE|MIR|MIRb	-	chr2	219220208	219222248	ATG9A|ENST00000475339.1	-	219220208,219220746,219221079,219222049	219220452,219220892,219221302,219222248	0.888889
testis_male_adult_54_years	chr3	122747553	122747582	122747553	-	RAMPAGE_only	3	3	20	0.742640	3.303702	chr3	122746616	122748398	Retroposon|SVA|SVA_D	+	chr3	122740002	122741776	HSPBAP1|ENST00000471534.1	-	122740002,122741002	122740875,122741776	0.850000
testis_male_adult_54_years	chr15	62232102	62232122	62232115	+	RAMPAGE_only	2	2	8	0.297056	2.807355	chr15	62232129	62232226	LINE|L2|L2b	+	chr15	62222394	62271304	STRG.295655.1	+	62222394,62254960,62268139	62246950,62267854,62271304	0.875000
testis_male_adult_54_years	chr2	65731674	65731675	65731674	+	High_confidence	19	19	27	1.002564	4.469670	chr2	65731354	65731976	LTR|ERV1|LTR9	-	chr2	65731674	65770104	AC007389.1|ENST00000414811.5	+	65731674,65732892,65733872,65754748,65770012	65731950,65732934,65733983,65754783,65770104	0.555556
testis_male_adult_54_years	chr5	777544	777573	777551	-	High_confidence	257	407	706	26.215200	5.987800	chr5	777028	778057	LTR|ERV1|LTR12D	-	chr5	716807	777531	STRG.111218.2	-	716807,730433,731961,733751,741593,745182,748403,749251,751140,754997,765842,766697,768834,774176	716865,730468,732664,733839,741628,745298,748559,750207,751257,755099,765935,767524,773931,777531	0.987252
testis_male_adult_54_years	chr7	2242922	2242923	2242922	+	High_confidence	64	64	74	2.747769	4.555058	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.986486
testis_male_adult_54_years	chr16	20679237	20679238	20679237	+	RAMPAGE_only	5	5	8	0.297056	2.807355	chr16	20678043	20681722	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.750000
testis_male_adult_54_years	chr17	31732093	31732094	31732093	+	High_confidence	16	16	18	0.668376	3.852169	chr17	31731596	31732520	LTR|ERV1|LTR12	+	chr17	31732046	31732446	STRG.316546.1	+	31732046	31732446	0.611111
testis_male_adult_54_years	chr12	58687311	58687350	58687341	-	RAMPAGE_only	9	12	38	1.411016	5.090033	chr12	58687224	58687498	LINE|L2|L2c	+	chr12	58683723	58781728	STRG.254241.3	-	58683723,58756962,58768611,58781570	58712352,58765387,58768732,58781728	1.000000
testis_male_adult_54_years	chr1	186224438	186224478	186224477	+	RAMPAGE_only	30	30	46	1.708073	5.159325	chr1	186224284	186227756	LTR|ERV1|MER41-int	+	chr1	186227541	186228201	STRG.21512.1	+	186227541	186228201	0.934783
testis_male_adult_54_years	chr2	113980268	113980306	113980305	+	High_confidence	4	5	16	0.594112	2.608459	chr2	113980251	113980680	LTR|ERV1|MER65A	-	chr2	113979908	114007302	STRG.44273.5	+	113979908,114007018	113980404,114007302	0.937500
testis_male_adult_54_years	chr4	189722280	189722323	189722290	-	High_confidence	26	26	61	2.265053	5.578118	chr4	189721949	189722303	LINE|L1|L1M3b	+	chr4	189719290	189722577	STRG.110973.4	-	189719290	189722577	0.557377
testis_male_adult_54_years	chr3	135965670	135965734	135965723	+	High_confidence	49	76	541	20.088418	6.825765	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965743	136021659	STRG.78433.8	+	135965743,136001058	135966421,136021659	0.876155
testis_male_adult_54_years	chr20	44351890	44351918	44351917	-	RAMPAGE_only	7	7	14	0.519848	3.085055	chr20	44351807	44351944	SINE|MIR|MIR3	-	chr20	44347551	44355185	AL117382.1|ENST00000438702.1	-	44347551,44350619,44351867,44355018	44347818,44350856,44351950,44355185	0.714286
testis_male_adult_54_years	chr10	26650672	26650673	26650672	+	High_confidence	6	6	6	0.222792	2.584963	chr10	26650702	26650955	SINE|Alu|AluJo	+	chr10	26650553	26653383	FAM238B|ENST00000612040.2	+	26650553,26653064	26650657,26653383	0.666667
testis_male_adult_54_years	chr14	81623082	81623083	81623082	-	High_confidence	209	210	242	8.985947	6.288179	chr14	81622661	81624332	LTR|ERV1|LTR12C	-	chr14	81617726	81623070	STRG.286324.1	-	81617726,81622652	81619372,81623070	0.938017
testis_male_adult_54_years	chr7	76977098	76977130	76977098	+	RAMPAGE_only	5	5	12	0.445584	3.084963	chr7	76977076	76977162	LINE|L2|L2b	-	chr7	76978616	77004308	DTX2P1|ENST00000425797.2	+	76978616,76980620,76990268,76995454,77000308,77002162,77003288,77004217	76978876,76981260,76990369,76995595,77000388,77002321,77003449,77004308	0.750000
testis_male_adult_54_years	chr19	53253092	53253127	53253092	-	RAMPAGE_only	4	4	14	0.519848	3.700440	chr19	53252821	53253277	DNA|TcMar-Tigger|Tigger2a	-	chr19	53235384	53251630	ZNF677|ENST00000333952.8	-	53235384,53243743,53251535	53238557,53243897,53251630	0.857143
testis_male_adult_54_years	chr1	222477623	222477633	222477623	-	RAMPAGE_only	4	4	9	0.334188	3.000000	chr1	222477164	222477584	DNA|hAT-Charlie|MER1A	-	chr1	222471914	222489700	STRG.25602.2	-	222471914,222474658,222477246,222479367,222486056,222489588	222474612,222477153,222477304,222479558,222486121,222489700	0.888889
testis_male_adult_54_years	chr7	29970319	29970359	29970319	-	High_confidence	6	6	23	0.854036	4.106603	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	0.782609
testis_male_adult_54_years	chr13	106561950	106561951	106561950	-	High_confidence	153	154	181	6.720894	6.292243	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.878453
testis_male_adult_54_years	chr1	6981019	6981047	6981019	+	RAMPAGE_only	10	11	20	0.742640	4.247928	chr1	6980966	6981263	DNA|TcMar-Tigger|MER46C	-	chr1	6785323	7769706	CAMTA1|ENST00000303635.11	+	6785323,6820180,6825091,7091303,7249490,7467829,7640399,7661725,7663352,7670910,7677598,7732447,7736343,7736930,7737254,7737958,7744834,7745844,7747709,7751198,7752458,7755637,7766458	6785575,6820250,6825210,7091371,7249626,7467901,7640553,7661866,7665199,7671037,7677733,7732599,7736540,7737009,7737570,7738482,7745022,7746091,7747781,7751392,7752533,7755668,7769706	0.650000
testis_male_adult_54_years	chr19	6939044	6939063	6939044	-	High_confidence	3	3	8	0.297056	2.750000	chr19	6938785	6939094	SINE|Alu|AluSx1	-	chr19	6938610	6939022	STRG.332082.1	-	6938610	6939022	0.875000
testis_male_adult_54_years	chr6	162809993	162810014	162810013	-	High_confidence	5	5	9	0.334188	2.947703	chr6	162809863	162811222	LINE|L1|L1MD1	+	chr6	162809692	162810006	STRG.155834.1	-	162809692	162810006	0.555556
testis_male_adult_54_years	chr20	36696739	36696780	36696739	-	RAMPAGE_only	11	11	31	1.151092	4.487123	chr20	36696486	36696790	SINE|Alu|AluSc	-	chr20	36651770	36700675	STRG.344969.4	-	36651770,36656359,36656496,36660336,36665045,36665235,36666288,36671340,36680815,36682517,36684412,36687491,36688678,36700434	36653701,36656411,36656532,36660384,36665097,36665301,36666392,36671397,36680902,36682578,36684475,36687612,36688784,36700675	0.903226
testis_male_adult_54_years	chr8	57203880	57203978	57203977	+	RAMPAGE_only	18	24	103	3.824597	6.101136	chr8	57203371	57203980	LTR|ERV1|MER50	-	chr8	57193619	57220236	STRG.184749.4	+	57193619,57193884,57210733,57212877,57215108,57218269,57220110	57193689,57206354,57212583,57214932,57217976,57219623,57220236	0.980583
testis_male_adult_54_years	chr6	7888062	7888065	7888062	-	RAMPAGE_only	4	4	11	0.408452	3.121928	chr6	7887958	7888157	LINE|L2|L2a	+	chr6	7881516	7889445	TXNDC5|ENST00000460138.5	-	7881516,7884358,7885960,7888704	7883266,7884488,7886043,7889445	0.909091
testis_male_adult_54_years	chr5	149331895	149331926	149331923	+	High_confidence	131	144	363	13.478920	6.508795	chr5	149331910	149332114	LTR|ERVL-MaLR|MLT1K	-	chr5	149331899	149341802	STRG.129846.5	+	149331899,149332694,149335593,149340006,149341756	149332535,149332873,149335722,149341565,149341802	0.964187
testis_male_adult_54_years	chr2	47526953	47527002	47526978	+	High_confidence	4	5	20	0.742640	4.021928	chr2	47526939	47527133	SINE|MIR|MIRb	-	chr2	47527007	47529164	HCG2040054|ENST00000648301.1	+	47527007,47529062	47527804,47529164	0.850000
testis_male_adult_54_years	chr8	57343774	57343822	57343797	+	High_confidence	8	8	29	1.076828	4.651084	chr8	57343822	57343947	SINE|MIR|MIRc	+	chr8	57343818	57344456	STRG.184581.1	+	57343818	57344456	0.689655
testis_male_adult_54_years	chr14	100573285	100573316	100573308	+	RAMPAGE_only	8	9	24	0.891168	4.142915	chr14	100572869	100573346	LINE|L2|L2b	-	chr14	100578228	100580137	STRG.288652.1	+	100578228	100580137	0.625000
testis_male_adult_54_years	chr4	177381452	177381499	177381498	+	High_confidence	10	12	48	1.782337	4.392779	chr4	177380669	177382315	LTR|ERV1|LTR28C	-	chr4	177381497	177383228	STRG.109184.1	+	177381497,177382588	177381654,177383228	0.916667
testis_male_adult_54_years	chr14	18959125	18959139	18959131	+	RAMPAGE_only	3	4	12	0.445584	3.095795	chr14	18958842	18959999	LINE|L1|L1MA6	-	chr14	18944198	19006846	STRG.277141.5	+	18944198,18954744,18957274,18959229,18967392,18972759,18973033,18974760,18976048,18977465,18980073,18985410,18987168,18988254,18997040,18998666	18952446,18954858,18957387,18959341,18968006,18972874,18973207,18975016,18976155,18977603,18980144,18985481,18987213,18988421,18997159,19006846	0.500000
testis_male_adult_54_years	chr9	107566802	107566820	107566819	+	High_confidence	10	10	42	1.559544	5.011365	chr9	107566751	107567157	DNA|hAT-Charlie|Charlie22a	-	chr9	107566811	107569633	STRG.208444.1	+	107566811,107569058	107567197,107569633	0.785714
testis_male_adult_54_years	chr7	128619056	128619107	128619056	+	RAMPAGE_only	4	6	31	1.151092	4.481728	chr7	128619037	128619073	LINE|L2|L2c	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.935484
testis_male_adult_54_years	chr5	163509531	163509559	163509546	+	RAMPAGE_only	8	8	35	1.299620	3.953247	chr5	163509415	163509569	DNA|hAT-Charlie|MER5A	+	chr5	163505638	163516615	MAT2B|ENST00000520449.1	+	163505638,163512001,163513841,163516517	163505749,163512196,163513994,163516615	0.742857
testis_male_adult_54_years	chr7	139230241	139230261	139230260	-	High_confidence	2	3	7	0.259924	2.584963	chr7	139230177	139230264	SINE|MIR|MIR3	-	chr7	139227234	139231156	STRG.175172.1	-	139227234,139230202	139227872,139231156	0.714286
testis_male_adult_54_years	chr2	178523594	178523595	178523594	+	High_confidence	5	5	8	0.297056	2.807355	chr2	178523565	178523643	SINE|MIR|MIR3	-	chr2	178523556	178578346	STRG.52349.3	+	178523556,178535731,178537603,178538697,178542221,178571299	178523636,178535828,178537691,178540169,178542361,178578346	0.625000
testis_male_adult_54_years	chr4	177227164	177227165	177227164	-	High_confidence	197	197	215	7.983382	5.204753	chr4	177226748	177228090	LTR|ERV1|LTR12C	-	chr4	177219884	177227180	STRG.109183.1	-	177219884,177226585	177220675,177227180	0.986047
testis_male_adult_54_years	chr12	32391085	32391102	32391085	+	High_confidence	12	13	23	0.854036	3.913977	chr12	32390329	32391256	LTR|ERV1|LTR12D	-	chr12	32390821	32391417	STRG.251228.1	+	32390821	32391417	0.695652
testis_male_adult_54_years	chr11	123797502	123797544	123797502	+	High_confidence	16	18	56	2.079393	4.736197	chr11	123796966	123797634	LTR|ERV1|LTR76	-	chr11	123796713	123891555	STRG.244120.8	+	123796713,123797788,123816990,123888832	123797665,123797992,123817128,123891555	0.857143
testis_male_adult_54_years	chr14	40954688	40954701	40954688	+	High_confidence	4	4	10	0.371320	3.121928	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954710	41141048	LOC644919|NR_109758.1	+	40954710,40962789,40974339,41140833	40954952,40962842,40974390,41141048	0.600000
testis_male_adult_54_years	chr9	31848660	31848680	31848660	+	High_confidence	16	20	76	2.822033	5.197480	chr9	31848550	31848874	LTR|ERV1|MER61A	+	chr9	31848675	31849029	STRG.200770.1	+	31848675	31849029	0.565789
testis_male_adult_54_years	chr8	53177567	53177568	53177567	+	High_confidence	167	167	172	6.386706	6.442539	chr8	53177213	53177691	LTR|ERV1|LTR10B	+	chr8	53177570	53216423	AC009646.2|ENST00000529837.1	+	53177570,53216298	53178003,53216423	0.750000
testis_male_adult_54_years	chr8	80485592	80485596	80485592	+	High_confidence	6	6	10	0.371320	3.169925	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.800000
testis_male_adult_54_years	chr12	31728485	31728486	31728485	-	High_confidence	6	6	9	0.334188	3.000000	chr12	31728300	31728554	SINE|MIR|MIR	-	chr12	31671944	31729010	AMN1|ENST00000537562.5	-	31671944,31689006,31697360,31697739,31701862,31709292,31714440,31714881,31719217,31728970	31672377,31689118,31697417,31697957,31702007,31709425,31714631,31714951,31719356,31729010	0.888889
testis_male_adult_54_years	chr22	28299795	28299826	28299825	-	High_confidence	11	12	38	1.411016	3.114805	chr22	28299683	28299851	SINE|MIR|MIRb	-	chr22	28296213	28300627	STRG.354992.10	-	28296213,28297579,28299585	28296328,28297852,28300627	0.763158
testis_male_adult_54_years	chr15	33019051	33019052	33019051	-	RAMPAGE_only	188	189	232	8.614627	6.352283	chr15	33018639	33020029	LTR|ERV1|LTR12C	-	chr15	32969069	33020314	STRG.291720.11	-	32969069,33008013,33018599	32969477,33008075,33020314	0.939655
testis_male_adult_54_years	chr13	49741030	49741041	49741040	-	RAMPAGE_only	4	4	10	0.371320	2.947703	chr13	49740720	49741456	LINE|L1|L1MA8	-	chr13	49699306	49792921	KPNA3|NM_002267.3	-	49699306,49702385,49705620,49706097,49706267,49709571,49710890,49719774,49721954,49722476,49725415,49732370,49732604,49732746,49732956,49746948,49792437	49701898,49702480,49705783,49706169,49706372,49709700,49711022,49719819,49722124,49722563,49725501,49732466,49732657,49732776,49733046,49746993,49792921	0.700000
testis_male_adult_54_years	chr5	29295896	29295931	29295896	-	High_confidence	13	13	36	1.336752	4.771143	chr5	29295500	29296998	LTR|ERV1|LTR12C	-	chr5	29295028	29296015	STRG.115438.1	-	29295028	29296015	0.861111
testis_male_adult_54_years	chr16	58684223	58684224	58684223	-	High_confidence	5	5	8	0.297056	2.807355	chr16	58684185	58684294	SINE|MIR|MIR1_Amn	-	chr16	58667277	58684181	SLC38A7|ENST00000566598.5	-	58667277,58670112,58671044,58672095,58675939,58676288,58677325,58678332,58678695,58679856,58683954	58667487,58670167,58671244,58672243,58676022,58676346,58677424,58678474,58678894,58680241,58684181	0.750000
testis_male_adult_54_years	chr5	116085461	116085498	116085472	+	High_confidence	3	3	10	0.371320	3.121928	chr5	116085484	116085794	DNA|hAT-Charlie|MER113	+	chr5	116085473	116292657	COMMD10|ENST00000515539.5	+	116085473,116087496,116091078,116092544,116134067,116291516,116292450	116085606,116087587,116091189,116092700,116134178,116291576,116292657	0.500000
testis_male_adult_54_years	chr3	98733246	98733265	98733246	+	High_confidence	2	2	8	0.297056	2.521641	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.625000
testis_male_adult_54_years	chr9	66164777	66164808	66164807	-	High_confidence	2	2	6	0.222792	2.584963	chr9	66164559	66164946	LTR|ERV1|LOR1b	-	chr9	66159953	66164904	AL513478.2|ENST00000610400.1	-	66159953,66162050,66162812,66164294,66164565	66160229,66162202,66162887,66164440,66164904	1.000000
testis_male_adult_54_years	chr1	35408134	35408154	35408134	+	RAMPAGE_only	5	5	10	0.371320	2.721928	chr1	35408149	35408455	LINE|L1|L1ME3G	+	chr1	35361704	35422058	ZMYM4|ENST00000457946.1	+	35361704,35370028,35370371,35381258,35381545,35387002,35387453,35388909,35389947,35392211,35392646,35393594,35396554,35397376,35398412,35398863,35399481,35405022,35405372,35408007,35413971,35415465,35418442,35419469	35361789,35370113,35370627,35381433,35381758,35387278,35387604,35389082,35390098,35392352,35392684,35393739,35396670,35397545,35398466,35399043,35399576,35405194,35405468,35408159,35414083,35415714,35418572,35422058	1.000000
testis_male_adult_54_years	chr5	124711693	124711722	124711711	-	RAMPAGE_only	12	12	65	2.413581	5.806983	chr5	124711630	124711684	LINE|L2|L2c	-	chr5	124648262	124713334	STRG.126642.5	-	124648262,124649609,124651599,124701013,124711617	124649133,124649697,124652298,124701269,124713334	0.569231
testis_male_adult_54_years	chr21	21746960	21746961	21746960	+	High_confidence	7	7	7	0.259924	2.807355	chr21	21746768	21747069	LTR|ERVL-MaLR|THE1A	+	chr21	21746972	21797415	LINC01425|ENST00000425979.5	+	21746972,21784972,21786298,21797178	21747043,21785053,21786391,21797415	1.000000
testis_male_adult_54_years	chr21	25779130	25779134	25779130	+	High_confidence	104	108	161	5.978254	5.581468	chr21	25778185	25779539	LTR|ERV1|LTR12C	+	chr21	25779115	25794543	STRG.350054.1	+	25779115	25794543	0.968944
testis_male_adult_54_years	chr13	30996278	30996285	30996284	-	High_confidence	7	7	13	0.482716	3.418296	chr13	30996171	30996593	LTR|ERVL-MaLR|MSTB	+	chr13	30995161	30996138	LINC01066|ENST00000415283.1	-	30995161,30996053	30995475,30996138	0.923077
testis_male_adult_54_years	chr7	73452346	73452385	73452360	-	RAMPAGE_only	3	4	14	0.519848	3.700440	chr7	73452172	73452379	LINE|L1|L1MB8	-	chr7	73440397	73522272	BAZ1B|ENST00000339594.8	-	73440397,73442180,73442724,73443983,73447263,73449541,73450846,73459535,73462921,73465438,73466295,73469516,73470344,73476867,73489193,73492799,73498496,73508326,73510735,73521826	73441693,73442553,73442828,73444129,73447379,73449689,73450994,73459718,73463099,73465537,73466401,73469650,73470483,73478569,73489391,73492921,73498698,73508471,73510852,73522272	0.785714
testis_male_adult_54_years	chr11	24262192	24262193	24262192	-	High_confidence	5	5	8	0.297056	2.750000	chr11	24262002	24262364	LTR|ERVL-MaLR|MLT1A0	-	chr11	24235476	24262205	AC015771.1|ENST00000527283.5	-	24235476,24248872,24258191,24259435,24259917,24262080	24235505,24248929,24258311,24259562,24260013,24262205	0.750000
testis_male_adult_54_years	chr11	105961069	105961081	105961069	-	RAMPAGE_only	16	16	35	1.299620	4.786426	chr11	105958719	105961070	LINE|L1|L1PA10	-	chr11	105946500	105964409	STRG.241716.1	-	105946500,105960846,105964237	105946578,105960982,105964409	0.600000
testis_male_adult_54_years	chr4	106525441	106525497	106525496	+	High_confidence	25	26	51	1.893733	5.369812	chr4	106524487	106525908	LTR|ERV1|LTR12C	-	chr4	106525437	106641982	STRG.99728.1	+	106525437,106627033,106641947	106525935,106627133,106641982	0.627451
testis_male_adult_54_years	chr1	112957342	112957343	112957342	+	High_confidence	56	59	66	2.450713	5.226813	chr1	112957313	112957439	LINE|L2|L2c	-	chr1	112956460	112975430	SLC16A1-AS1|ENST00000428411.5	+	112956460,112960476,112968034	112957722,112960575,112975430	0.848485
testis_male_adult_54_years	chr4	11722463	11722488	11722463	+	High_confidence	69	80	205	7.612062	7.069791	chr4	11722242	11722729	LTR|ERVL-MaLR|MLT1F1	+	chr4	11722494	11789866	AC005699.1|ENST00000509244.1	+	11722494,11770308,11778185,11789757	11722615,11770475,11778535,11789866	0.658537
testis_male_adult_54_years	chr3	9014097	9014114	9014108	+	High_confidence	7	7	18	0.668376	4.169925	chr3	9013910	9014194	LTR|ERVL-MaLR|MLT1K	+	chr3	9014122	9015979	SRGAP3-AS1|ENST00000414633.1	+	9014122,9015720	9014291,9015979	0.777778
testis_male_adult_54_years	chr15	34588450	34588453	34588452	-	High_confidence	99	198	244	9.060211	6.501022	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.545082
testis_male_adult_54_years	chr19	10690428	10690433	10690428	+	RAMPAGE_only	3	3	11	0.408452	3.095795	chr19	10690378	10690577	DNA|hAT-Charlie|MER20	+	chr19	10687604	10692398	ILF3|ENST00000586544.1	+	10687604,10688549,10689178	10688114,10688678,10692398	1.000000
testis_male_adult_54_years	chr22	26735024	26735051	26735050	+	RAMPAGE_only	4	4	10	0.371320	2.947703	chr22	26734948	26735087	LINE|L2|L2b	+	chr22	26736883	26741895	STRG.354262.5	+	26736883,26740331	26738240,26741895	0.700000
testis_male_adult_54_years	chr11	57793995	57793996	57793995	+	RAMPAGE_only	7	8	8	0.297056	2.521641	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.750000
testis_male_adult_54_years	chr14	95136800	95136822	95136800	-	High_confidence	11	11	32	1.188224	4.082598	chr14	95136751	95136965	LTR|ERVL-MaLR|MLT1L	+	chr14	95086227	95136810	DICER1|NM_001271282.2	-	95086227,95091033,95091202,95093887,95095824,95099779,95103345,95105070,95105677,95106040,95107607,95107879,95108323,95111316,95112171,95113091,95115666,95116452,95117621,95124195,95126579,95129471,95130057,95131508,95132514,95133314,95136622	95090663,95091109,95091365,95094156,95096713,95099935,95104126,95105246,95105783,95106223,95107761,95108093,95108503,95111456,95112247,95113224,95115821,95116695,95117754,95124668,95126748,95129632,95130192,95131639,95132677,95133503,95136810	0.906250
testis_male_adult_54_years	chr18	33316448	33316470	33316469	-	RAMPAGE_only	6	13	25	0.928300	4.418296	chr18	33316045	33317509	LTR|ERV1|LTR12C	+	chr18	32937671	33412112	CCDC178|ENST00000406524.6	-	32937671,32974546,32983280,33092760,33211895,33215549,33223105,33224774,33226792,33245244,33266915,33267201,33293158,33323490,33333173,33346210,33348889,33356323,33370049,33389539,33397148,33412030	32938091,32974681,32983352,33092910,33212055,33215695,33223219,33224936,33226855,33245428,33267052,33267297,33293312,33323633,33333394,33346411,33348975,33356346,33370189,33389629,33397208,33412112	0.560000
testis_male_adult_54_years	chr14	102178931	102178942	102178941	+	High_confidence	161	162	236	8.763155	6.988917	chr14	102178791	102179056	SINE|MIR|MIRb	-	chr14	102178941	102208902	WDR20|ENST00000558448.5	+	102178941,102194937,102197754,102208602	102178976,102195120,102197847,102208902	0.614407
testis_male_adult_54_years	chr5	140596680	140596720	140596719	+	RAMPAGE_only	4	4	14	0.519848	3.664498	chr5	140596528	140596989	LTR|ERVL|MER70A	+	chr5	140639426	140645402	TMCO6|ENST00000394671.7	+	140639426,140639738,140641664,140641869,140642314,140642585,140642924,140643563,140643779,140644099,140644572,140644984	140639612,140639851,140641780,140642053,140642419,140642671,140643041,140643675,140643966,140644194,140644740,140645402	0.500000
testis_male_adult_54_years	chr1	157279027	157279050	157279049	+	RAMPAGE_only	4	4	17	0.631244	3.625000	chr1	157275503	157279383	LTR|ERV1|HERVFH21-int	-	chr1	157280715	157283068	AL138900.3|ENST00000607010.1	+	157280715,157282577	157280853,157283068	0.647059
testis_male_adult_54_years	chr11	58578026	58578041	58578040	+	RAMPAGE_only	3	3	9	0.334188	2.641604	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58579110	58621042	ZFP91|ENST00000316059.6	+	58579110,58584855,58609829,58610297,58610949,58611603,58612277,58612761,58614228,58616715,58617195	58579622,58584884,58610039,58610334,58611054,58611738,58612328,58612840,58614343,58616815,58621042	1.000000
testis_male_adult_54_years	chr12	16058206	16058207	16058206	+	High_confidence	184	188	236	8.763155	5.725610	chr12	16057198	16058622	LTR|ERV1|LTR12C	+	chr12	16058215	16273850	STRG.248918.1	+	16058215,16107509,16199504,16271430,16272546,16273341	16058625,16107570,16199645,16271482,16272705,16273850	0.940678
testis_male_adult_54_years	chr15	92914973	92914974	92914973	+	High_confidence	6	6	9	0.334188	3.169925	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.666667
testis_male_adult_54_years	chr14	70965379	70965392	70965391	+	High_confidence	15	16	48	1.782337	4.924597	chr14	70965381	70965682	SINE|Alu|AluSc8	+	chr14	70965369	70977151	PCNX1|ENST00000553428.2	+	70965369,70968197,70969020,70969858,70976941	70965432,70968243,70969110,70969999,70977151	0.625000
testis_male_adult_54_years	chr16	61129069	61129088	61129069	+	High_confidence	2	2	7	0.259924	2.584963	chr16	61127777	61129337	LTR|ERV1|LTR12C	-	chr16	61128878	61365800	STRG.307470.1	+	61128878,61193622,61365497	61129393,61193694,61365800	0.714286
testis_male_adult_54_years	chr7	66493274	66493275	66493274	-	High_confidence	7	7	10	0.371320	3.321928	chr7	66493191	66493285	SINE|Alu|AluJo	-	chr7	66423147	66493355	LINC00174|ENST00000638592.1	-	66423147,66427948,66439134,66450070,66479008,66480393,66481540,66485094,66487948,66489937,66491030,66493215	66423878,66428040,66439304,66450236,66479096,66480448,66481599,66485153,66488038,66490107,66491471,66493355	0.500000
testis_male_adult_54_years	chr9	120471803	120471828	120471803	-	RAMPAGE_only	4	5	12	0.445584	3.251629	chr9	120471770	120471851	LINE|L2|L2	+	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.583333
testis_male_adult_54_years	chr3	12868600	12868601	12868600	-	RAMPAGE_only	8	8	12	0.445584	2.845351	chr3	12867826	12868729	LTR|ERVK|LTR13_	+	chr3	12848486	12876233	STRG.63176.2	-	12848486,12851833	12850935,12876233	0.916667
testis_male_adult_54_years	chr20	33017449	33017482	33017481	+	High_confidence	3	3	6	0.222792	2.584963	chr20	33017455	33017513	SINE|Alu|AluJo	-	chr20	33017710	33019081	STRG.344467.1	+	33017710,33018258,33018636,33019061	33017727,33018350,33018822,33019081	0.666667
testis_male_adult_54_years	chr10	103517416	103517440	103517424	-	High_confidence	25	25	111	4.121653	5.935317	chr10	103517381	103517478	SINE|MIR|MIRb	-	chr10	103511778	103517442	NEURL1-AS1|NR_120676.1	-	103511778,103515340,103517385	103512155,103515402,103517442	0.540541
testis_male_adult_54_years	chr2	34992241	34992264	34992261	-	High_confidence	4	4	14	0.519848	3.238901	chr2	34991877	34992957	LTR|ERV1|LTR12D	+	chr2	34986929	34992308	STRG.33661.1	-	34986929,34990691,34991871	34987570,34990813,34992308	0.857143
testis_male_adult_54_years	chr9	2073107	2073118	2073107	+	High_confidence	5	5	9	0.334188	2.750000	chr9	2072786	2073156	LTR|ERVL-MaLR|MLT1N2	-	chr9	2073096	2081860	SMARCA2|ENST00000635129.1	+	2073096,2073565,2076228,2077628,2081831	2073342,2073623,2076329,2077776,2081860	0.888889
testis_male_adult_54_years	chr1	154533162	154533187	154533186	+	RAMPAGE_only	36	67	131	4.864293	6.226279	chr1	154532638	154533615	LINE|L1|L1MDa	-	chr1	154528773	154548147	STRG.17227.5	+	154528773,154543962,154544371,154544794,154547408	154542821,154544110,154544517,154544949,154548147	0.969466
testis_male_adult_54_years	chr21	25606460	25606463	25606462	-	RAMPAGE_only	3	5	8	0.297056	2.521641	chr21	25606381	25606463	LINE|RTE-BovB|MamRTE1	+	chr21	25592811	25607484	MRPL39|ENST00000419219.1	-	25592811,25593892,25597301,25599798,25601367,25603795,25606448,25607402	25592965,25593958,25597414,25599836,25601467,25603935,25606655,25607484	0.875000
testis_male_adult_54_years	chr19	11039475	11039487	11039475	+	RAMPAGE_only	5	6	14	0.519848	3.521641	chr19	11039368	11039487	LINE|L1|L1ME4a	+	chr19	11040633	11062028	SMARCA4|ENST00000646889.1	+	11040633,11058254,11058787,11059752,11060044,11061783	11041560,11058363,11058889,11059885,11060187,11062028	0.785714
testis_male_adult_54_years	chr10	32681500	32681501	32681500	+	RAMPAGE_only	128	133	136	5.049954	5.987513	chr10	32681472	32681722	LTR|ERVL|MER76	-	chr10	32686018	32877139	CCDC7|ENST00000375028.8	+	32686018,32689052,32694878,32711619,32726733,32728931,32729331,32778976,32805014,32814369,32824517,32834814,32845242,32845542,32845875,32846375,32847832,32848595,32851806,32854399,32876346	32686080,32689163,32694992,32711730,32726832,32728997,32729457,32779084,32805098,32814453,32824604,32834898,32845326,32845626,32845959,32846459,32847916,32848718,32851932,32854489,32877139	0.742647
testis_male_adult_54_years	chr13	24277172	24277173	24277172	+	RAMPAGE_only	12	12	14	0.519848	3.467720	chr13	24277162	24277468	SINE|Alu|AluY	+	chr13	24270840	24286393	SPATA13|ENST00000454083.1	+	24270840,24278613,24284134,24286213	24270912,24278821,24284271,24286393	0.642857
testis_male_adult_54_years	chr11	133845982	133846004	133845982	-	High_confidence	3	3	12	0.445584	3.418296	chr11	133845773	133846303	LTR|ERV1|MER51A	+	chr11	133840621	133845538	SPATA19|NM_174927.2	-	133840621,133842029,133842484,133844245,133844508,133845133,133845368	133840923,133842105,133842562,133844337,133844640,133845190,133845538	0.916667
testis_male_adult_54_years	chr16	30930518	30930550	30930549	+	RAMPAGE_only	5	5	10	0.371320	2.947703	chr16	30930590	30930694	SINE|MIR|MIR1_Amn	+	chr16	30925891	30948783	FBXL19|ENST00000427128.5	+	30925891,30927307,30927572,30927744,30928466,30930072,30942115,30942374,30946729,30947051	30925931,30927451,30927659,30927963,30928499,30930584,30942279,30942536,30946948,30948783	0.800000
testis_male_adult_54_years	chr3	121512166	121512231	121512230	-	High_confidence	6	6	15	0.556980	3.807355	chr3	121512186	121512762	LTR|ERV1|MER34A	+	chr3	121458510	121512708	STRG.76682.3	-	121458510,121467518,121468304,121471989,121476539,121481571,121483385,121485040,121487301,121493477,121496807,121498476,121509560,121510038,121511886	121460234,121467640,121468431,121473487,121476733,121481812,121483582,121485184,121490408,121493653,121496932,121498670,121509703,121510243,121512708	0.866667
testis_male_adult_54_years	chr9	23735567	23735568	23735567	-	High_confidence	49	49	71	2.636373	5.523478	chr9	23735281	23735578	SINE|Alu|AluSz6	-	chr9	23701414	23735565	ELAVL2|ENST00000423281.1	-	23701414,23704917,23731021,23735236	23701604,23705071,23731125,23735565	0.830986
testis_male_adult_54_years	chr6	36755608	36755623	36755622	-	RAMPAGE_only	4	4	10	0.371320	3.121928	chr6	36755362	36755677	LINE|L2|L2a	+	chr6	36754232	36757400	CPNE5|ENST00000634222.1	-	36754232,36757284	36756298,36757400	1.000000
testis_male_adult_54_years	chr7	101538422	101538448	101538443	-	High_confidence	4	4	12	0.445584	3.459432	chr7	101538355	101538542	SINE|MIR|MIRc	+	chr7	101537967	101538425	STRG.170222.1	-	101537967	101538425	0.500000
testis_male_adult_54_years	chr8	98176472	98176479	98176478	+	High_confidence	29	33	61	2.265053	5.327642	chr8	98176430	98176954	LTR|ERVL-MaLR|MLT1F	+	chr8	98176481	98180616	STRG.190556.1	+	98176481,98179821,98180593	98176908,98180044,98180616	0.868852
testis_male_adult_54_years	chr14	95573545	95573568	95573550	+	High_confidence	16	16	39	1.448148	5.060918	chr14	95573286	95573852	LTR|ERV1|MER50	-	chr14	95573604	95578684	LINC02318|ENST00000553785.1	+	95573604,95577428	95573682,95578684	0.512821
testis_male_adult_54_years	chr15	40399640	40399643	40399640	+	High_confidence	4	5	10	0.371320	3.169925	chr15	40399404	40399850	LTR|ERV1|LTR12B	+	chr15	40399652	40400079	STRG.292905.1	+	40399652	40400079	0.600000
testis_male_adult_54_years	chr14	47626538	47626579	47626568	-	High_confidence	47	48	198	7.352138	6.537972	chr14	47626373	47628032	LTR|ERV1|LTR12C	+	chr14	46870937	47626525	MDGA2|ENST00000557238.5	-	46870937,46873432,46874044,46882043,46920011,46957373,47035010,47061248,47096853,47131713,47144077,47218020,47301410,47626338	46871960,46873591,46874200,46882221,46920160,46957643,47035278,47061578,47097123,47131846,47144274,47218195,47301550,47626525	0.580808
testis_male_adult_54_years	chr8	140663036	140663058	140663056	-	High_confidence	13	29	43	1.596676	4.879526	chr8	140662725	140663367	LINE|L1|L1MC4	+	chr8	140659486	140663084	PTK2|ENST00000523435.1	-	140659486,140662647	140659678,140663084	0.860465
testis_male_adult_54_years	chr17	4656059	4656062	4656061	-	High_confidence	179	274	306	11.362395	5.269119	chr17	4655641	4657054	LTR|ERV1|LTR12C	-	chr17	4651481	4656049	STRG.312623.1	-	4651481,4655673	4654258,4656049	0.921569
testis_male_adult_54_years	chr1	56762009	56762034	56762009	-	High_confidence	2	2	8	0.297056	2.807355	chr1	56761880	56763953	LINE|L1|L1MDa	-	chr1	56718870	56762013	FYB2|ENST00000493000.5	-	56718870,56720021,56720172,56723587,56726496,56737086,56740696,56744025,56744151,56751043,56753838,56755895,56758715,56761943	56719692,56720055,56720329,56723681,56726583,56737147,56740795,56744066,56744266,56751203,56753935,56755927,56758750,56762013	0.625000
testis_male_adult_54_years	chr13	63839946	63839947	63839946	-	RAMPAGE_only	6	7	8	0.297056	2.750000	chr13	63839745	63840345	LTR|ERV1|HERVE-int	+	chr13	63837294	63843424	OR7E104P|ENST00000641745.1	-	63837294,63838159,63839069,63839748,63841522,63843313	63837442,63838238,63839225,63839824,63841623,63843424	0.500000
testis_male_adult_54_years	chr21	35691203	35691233	35691232	-	High_confidence	9	9	23	0.854036	3.534219	chr21	35691113	35691413	SINE|Alu|AluSz6	+	chr21	35564191	35691519	STRG.351362.10	-	35564191,35654819,35691049	35580929,35654875,35691519	0.695652
testis_male_adult_54_years	chr11	106101889	106101923	106101904	-	High_confidence	4	4	18	0.668376	3.969816	chr11	106101563	106101911	LTR|ERVL|LTR33	+	chr11	106096546	106101975	AP001001.1|ENST00000527594.1	-	106096546,106101651	106096914,106101975	0.666667
testis_male_adult_54_years	chr17	44445876	44445877	44445876	-	RAMPAGE_only	6	6	6	0.222792	2.584963	chr17	44445869	44445937	SINE|MIR|MIR3	+	chr17	44395276	44436851	GPATCH8|NM_001304943.1	-	44395276,44405920,44424348,44435064,44436477	44401453,44406051,44424492,44435151,44436851	0.833333
testis_male_adult_54_years	chr3	64023988	64024007	64023988	-	High_confidence	112	125	294	10.916811	6.748731	chr3	64023821	64024009	SINE|MIR|MIRb	-	chr3	64010548	64024010	PSMD6|NM_001271780.1	-	64010548,64010877,64013438,64018598,64018817,64019295,64022317,64023804	64010764,64010955,64013607,64018707,64019037,64019441,64022523,64024010	0.996599
testis_male_adult_54_years	chr20	23519421	23519431	23519421	+	High_confidence	4	4	8	0.297056	3.000000	chr20	23519383	23519851	LTR|ERVL|LTR102_Mam	-	chr20	23519147	23542018	CST13P|ENST00000413633.5	+	23519147,23520749,23534197,23541673	23519484,23521108,23534308,23542018	0.875000
testis_male_adult_54_years	chr11	69337333	69337342	69337341	+	High_confidence	3	3	7	0.259924	2.584963	chr11	69337058	69337345	LINE|L1|L1ME1	-	chr11	69337359	69367726	MYEOV|ENST00000541137.5	+	69337359,69341509,69366742,69367038,69367294	69337436,69341678,69366866,69367112,69367726	0.857143
testis_male_adult_54_years	chr12	113773650	113773698	113773685	-	High_confidence	19	22	60	2.227921	4.717654	chr12	113773363	113773916	LTR|ERVL-MaLR|MLT1K	-	chr12	113744576	113773683	LINC01234|NR_110026.1	-	113744576,113767074,113773614	113746595,113767208,113773683	0.900000
testis_male_adult_54_years	chr12	81512337	81512391	81512374	-	High_confidence	38	41	153	5.681198	6.574085	chr12	81512110	81512385	LINE|L2|L2	+	chr12	81259435	81512362	PPFIA2|ENST00000550359.6	-	81259435,81261948,81263230,81266951,81267911,81277316,81281256,81283009,81284240,81294834,81299300,81325776,81339179,81341077,81344663,81347532,81353118,81358081,81362692,81367107,81368724,81369110,81374633,81375795,81384022,81405786,81439971,81445555,81457764,81512283	81259660,81262040,81263390,81267020,81268087,81277414,81281450,81283039,81284303,81295035,81299382,81325870,81339334,81341208,81344693,81347770,81353339,81358217,81362784,81367170,81368856,81369194,81374768,81375942,81384244,81405903,81440046,81445720,81457866,81512362	0.915033
testis_male_adult_54_years	chr1	74614579	74614626	74614579	+	RAMPAGE_only	5	5	21	0.779772	3.431624	chr1	74614392	74614692	SINE|Alu|AluY	+	chr1	74589734	74626098	ERICH3-AS1|NR_121670.1	+	74589734,74615205,74621395	74589907,74615296,74626098	0.904762
testis_male_adult_54_years	chr12	100093223	100093244	100093227	-	High_confidence	6	6	13	0.482716	3.026987	chr12	100093217	100093506	DNA|hAT-Charlie|Charlie2b	-	chr12	100072778	100092964	UHRF1BP1L|ENST00000551973.5	-	100072778,100083015,100084475,100086274,100088914,100092902	100072813,100083134,100084658,100086358,100089095,100092964	0.846154
testis_male_adult_54_years	chr17	38708926	38708968	38708967	+	High_confidence	2	2	10	0.371320	2.725481	chr17	38708924	38709069	DNA|hAT-Charlie|MER3	-	chr17	38709079	38715677	MLLT6|ENST00000618652.1	+	38709079,38709481,38711846,38712690,38715611	38709276,38709575,38712014,38712789,38715677	0.900000
testis_male_adult_54_years	chr6	34017091	34017092	34017091	+	High_confidence	11	11	14	0.519848	3.700440	chr6	34016359	34017710	LTR|ERV1|LTR12C	-	chr6	34017099	34018663	STRG.140364.1	+	34017099	34018663	0.928571
testis_male_adult_54_years	chr12	82805141	82805144	82805141	+	High_confidence	7	8	15	0.556980	3.906891	chr12	82804878	82805466	LTR|ERV1|LTR10C	-	chr12	82804534	82815904	STRG.257360.1	+	82804534,82814247	82805200,82815904	0.600000
testis_male_adult_54_years	chr4	99019581	99019584	99019583	+	RAMPAGE_only	58	110	154	5.718330	6.518867	chr4	99013919	99021508	LTR|ERV1|HERVIP10B3-int	-	chr4	99022294	99043271	METAP1|ENST00000513199.5	+	99022294,99028866,99034229,99035399,99035953,99039373,99041042,99043248	99022424,99028918,99034342,99035460,99036011,99039465,99041126,99043271	0.636364
testis_male_adult_54_years	chr5	38403439	38403471	38403439	-	High_confidence	18	21	67	2.487845	5.476064	chr5	38403268	38403777	DNA|TcMar-Tigger|Tigger7	-	chr5	38399813	38403413	EGFLAM-AS2|ENST00000512603.5	-	38399813,38401823,38403398	38400006,38402081,38403413	0.611940
testis_male_adult_54_years	chr1	13440084	13440086	13440085	+	High_confidence	9	18	20	0.742640	4.121928	chr1	13439100	13440398	LTR|ERV1|LTR12C	+	chr1	13439982	13442336	STRG.881.1	+	13439982,13441156	13440445,13442336	0.950000
testis_male_adult_54_years	chr13	60621429	60621442	60621429	-	RAMPAGE_only	3	3	10	0.371320	2.947703	chr13	60621387	60621550	DNA|hAT-Blackjack|MER63A	-	chr13	60616423	60618885	STRG.269783.1	-	60616423,60617564,60618833	60616936,60617832,60618885	0.800000
testis_male_adult_54_years	chr2	59067031	59067066	59067031	+	High_confidence	7	7	41	1.522412	4.663231	chr2	59066747	59067241	LTR|ERV1|LTR12E	+	chr2	59066770	59067968	STRG.37985.1	+	59066770	59067968	0.829268
testis_male_adult_54_years	chrX	24662816	24662834	24662820	+	High_confidence	9	9	46	1.708073	4.628752	chrX	24662451	24662978	LTR|ERVL|LTR75	+	chrX	24662785	24668392	STRG.360145.1	+	24662785,24668137	24662885,24668392	0.847826
testis_male_adult_54_years	chr1	23019104	23019107	23019106	-	RAMPAGE_only	13	20	27	1.002564	3.917189	chr1	23019089	23019192	LINE|L2|L2c	+	chr1	23010833	23015850	C1orf234|NM_001242521.1	-	23010833,23013882,23015771	23011101,23014045,23015850	0.740741
testis_male_adult_54_years	chr18	46389509	46389510	46389509	-	High_confidence	7	7	11	0.408452	3.121928	chr18	46389422	46389520	SINE|MIR|MIR3	-	chr18	46388738	46389501	STRG.326922.1	-	46388738,46389128,46389397	46388876,46389258,46389501	0.727273
testis_male_adult_54_years	chr6	130978725	130978830	130978738	-	High_confidence	108	112	459	17.043593	6.376488	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.773420
testis_male_adult_54_years	chr12	111023543	111023561	111023543	+	RAMPAGE_only	6	6	14	0.519848	3.392747	chr12	111023574	111023656	SINE|Alu|AluJr	+	chr12	111026169	111027582	STRG.261643.1	+	111026169,111027478	111026469,111027582	0.928571
testis_male_adult_54_years	chr15	33128640	33128672	33128640	-	High_confidence	2	2	9	0.334188	3.169925	chr15	33128552	33129144	LTR|ERV1|LTR12_	-	chr15	32969069	33128844	STRG.291720.4	-	32969069,33008013,33064956,33088798,33092132,33128549	32969477,33008075,33065074,33088974,33092203,33128844	0.666667
testis_male_adult_54_years	chr13	63306024	63306050	63306025	-	RAMPAGE_only	5	9	24	0.891168	3.501398	chr13	63305559	63307116	LTR|ERV1|LTR12C	+	chr13	63305405	63307384	STRG.270176.2	-	63305405	63307384	0.875000
testis_male_adult_54_years	chr20	32359397	32359398	32359397	+	High_confidence	13	14	18	0.668376	3.947703	chr20	32359379	32359561	DNA|hAT-Charlie|MER5A	-	chr20	32359564	32372553	ASXL1|ENST00000375689.5	+	32359564,32366383,32367726,32369014,32372163	32359791,32366466,32367729,32369123,32372553	0.888889
testis_male_adult_54_years	chrX	24151402	24151403	24151402	+	High_confidence	26	26	33	1.225356	4.429229	chrX	24151340	24151459	LINE|L2|L2b	-	chrX	24151425	24172914	ZFX|ENST00000480195.1	+	24151425,24152719,24172714	24151481,24152830,24172914	0.575758
testis_male_adult_54_years	chr7	54330441	54330442	54330441	-	High_confidence	30	32	35	1.299620	4.771143	chr7	54329994	54330847	LTR|ERVL|MER21C	-	chr7	54328936	54330424	STRG.164411.1	-	54328936	54330424	0.514286
testis_male_adult_54_years	chr12	21662312	21662316	21662312	+	High_confidence	164	181	288	10.694019	5.960865	chr12	21661347	21662731	LTR|ERV1|LTR12C	+	chr12	21662312	21760032	AC010197.1|ENST00000541860.1	+	21662312,21759913	21662771,21760032	0.920139
testis_male_adult_54_years	chr16	1957596	1957606	1957596	-	High_confidence	4	4	15	0.556980	2.985228	chr16	1957336	1958737	LTR|ERV1|LTR12C	-	chr16	1954656	1957597	RPL3L|ENST00000566484.1	-	1954656,1957393	1955009,1957597	0.733333
testis_male_adult_54_years	chr11	91794169	91794179	91794178	-	High_confidence	5	5	9	0.334188	3.000000	chr11	91794002	91794543	LTR|ERV1|MER51A	-	chr11	91790527	91794289	STRG.238708.1	-	91790527,91793783	91793250,91794289	0.777778
testis_male_adult_54_years	chr6	33683804	33683805	33683804	+	RAMPAGE_only	9	9	10	0.371320	3.169925	chr6	33683659	33683854	SINE|MIR|MIRc	-	chr6	33672728	33696569	STRG.140315.5	+	33672728,33674207,33675690,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33684019,33684356,33684597,33684773,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33673720,33674265,33675856,33676932,33677089,33677629,33678543,33678839,33680133,33680454,33680680,33683397,33684168,33684465,33684688,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696569	0.900000
testis_male_adult_54_years	chr1	166985221	166985238	166985232	+	RAMPAGE_only	114	114	246	9.134475	6.634379	chr1	166985042	166986207	LINE|L1|L1MEc	+	chr1	166989088	167022214	MAEL|NM_032858.2	+	166989088,166989736,166991377,166992685,166994027,167004179,167005075,167005255,167016221,167017826,167021084,167021667	166989484,166989829,166991477,166992841,166994069,167004304,167005130,167005397,167016284,167017959,167021160,167022214	0.727642
testis_male_adult_54_years	chr2	129144560	129144590	129144589	+	High_confidence	11	11	32	1.188224	4.147114	chr2	129143821	129144796	LTR|ERV1|LTR12D	-	chr2	129144511	129145544	STRG.46281.1	+	129144511	129145544	0.781250
testis_male_adult_54_years	chr14	87734295	87734298	87734297	-	High_confidence	79	100	132	4.901425	5.191414	chr14	87733892	87735317	LTR|ERV1|LTR12C	-	chr14	87464880	87734298	STRG.287436.2	-	87464880,87572960,87573662,87601467,87725954,87733867	87465588,87573139,87573858,87601619,87726010,87734298	0.984848
testis_male_adult_54_years	chr3	16536271	16536313	16536312	+	High_confidence	14	29	64	2.376449	5.476410	chr3	16536103	16536551	LTR|ERVL-MaLR|MLT1J	+	chr3	16536317	16541373	LINC00690|NR_103843.1	+	16536317,16539375,16540334	16536494,16539526,16541373	0.968750
testis_male_adult_54_years	chr2	113056201	113056215	113056214	+	RAMPAGE_only	6	6	12	0.445584	3.418296	chr2	113056071	113056441	LTR|ERVL-MaLR|MLT1F	-	chr2	113058637	113064744	IL36RN|NM_173170.1	+	113058637,113059411,113060851,113062123,113062452	113058743,113059467,113060937,113062251,113064744	0.833333
testis_male_adult_54_years	chr5	88439085	88439102	88439101	-	High_confidence	13	18	31	1.151092	4.736297	chr5	88438906	88439270	LTR|ERVL-MaLR|MLT1A0	-	chr5	88408981	88439090	LINC02060|ENST00000506041.2	-	88408981,88426501,88429358,88429780,88435979,88438984	88409945,88426793,88429488,88429850,88436043,88439090	0.838710
testis_male_adult_54_years	chr7	100349732	100349769	100349766	+	RAMPAGE_only	10	10	41	1.522412	4.659387	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100338176	100350158	STAG3L5P|ENST00000493499.1	+	100338176,100338772,100345864,100349716	100338264,100338889,100345968,100350158	0.512195
testis_male_adult_54_years	chr20	18793975	18794000	18793975	-	High_confidence	5	5	23	0.854036	4.297079	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18787970	18793982	LINC00652|NR_026884.1	-	18787970,18789573,18793664	18788898,18789709,18793982	0.652174
testis_male_adult_54_years	chr17	6190566	6190567	6190566	-	High_confidence	5	5	7	0.259924	2.584963	chr17	6190517	6190627	SINE|MIR|MIR	+	chr17	6189453	6190541	AC104770.1|ENST00000573698.1	-	6189453,6189724,6190453	6189554,6189860,6190541	0.571429
testis_male_adult_54_years	chr11	119110890	119110891	119110890	+	High_confidence	8	8	10	0.371320	2.947703	chr11	119110843	119110902	LINE|CR1|L3b	+	chr11	119111056	119117121	C2CD2L|ENST00000528586.2	+	119111056,119111262,119111520,119112327,119112481,119112699,119113610,119113854,119114079,119116024	119111168,119111374,119111629,119112392,119112609,119112874,119113712,119113988,119114365,119117121	0.900000
testis_male_adult_54_years	chr2	88291364	88291368	88291367	+	High_confidence	23	23	39	1.448148	5.017536	chr2	88291022	88291557	LTR|ERV1|LTR12F	+	chr2	88291128	88308498	STRG.41507.1	+	88291128,88308248	88292008,88308498	0.974359
testis_male_adult_54_years	chr12	30677219	30677230	30677224	-	High_confidence	2	2	7	0.259924	2.584963	chr12	30677086	30677179	LINE|L2|L2b	-	chr12	30628980	30677244	IPO8|NM_001190995.1	-	30628980,30631894,30634082,30636981,30639514,30649136,30652191,30652966,30656683,30661140,30662326,30663488,30665219,30665728,30666174,30669182,30670961,30673989,30674658,30676497,30676895	30630957,30632011,30634286,30637187,30639735,30649232,30652289,30653092,30656750,30661266,30662487,30663654,30665309,30665845,30666251,30669282,30671096,30674074,30674753,30676587,30677244	0.714286
testis_male_adult_54_years	chr2	69798997	69799002	69798997	-	High_confidence	38	51	73	2.710637	5.674051	chr2	69798831	69799610	LTR|ERV1|LTR19C	-	chr2	69789544	69799032	STRG.39731.5	-	69789544	69799032	0.972603
testis_male_adult_54_years	chr18	55665242	55665245	55665242	+	High_confidence	13	13	29	1.076828	4.450212	chr18	55665162	55665592	LTR|ERV1|LTR12C	+	chr18	55665298	55665688	STRG.327763.1	+	55665298	55665688	0.724138
testis_male_adult_54_years	chr5	80655151	80655185	80655184	+	High_confidence	5	6	30	1.113960	4.640224	chr5	80655174	80655239	SINE|MIR|MIR3	-	chr5	80655151	80656513	MSH3|ENST00000512531.1	+	80655151,80656410	80655579,80656513	0.666667
testis_male_adult_54_years	chr12	54744084	54744126	54744084	+	RAMPAGE_only	6	6	18	0.668376	3.852169	chr12	54738358	54744493	LINE|L1|L1PB1	-	chr12	54830518	54858260	MUCL1|ENST00000547990.1	+	54830518,54855115,54856769,54858192	54830875,54855157,54856892,54858260	0.777778
testis_male_adult_54_years	chr12	6987803	6987817	6987803	+	RAMPAGE_only	3	4	7	0.259924	2.521641	chr12	6987646	6988015	DNA|TcMar-Tigger|Tigger15a	-	chr12	6970941	7000062	STRG.247581.1	+	6970941,6974338,6974551,6975089,6975228,6983001,6987781,6988167,6997224	6971091,6974440,6974693,6975148,6975378,6983206,6987838,6988369,7000062	1.000000
testis_male_adult_54_years	chr1	45600392	45600436	45600392	+	RAMPAGE_only	6	6	29	1.076828	4.694019	chr1	45600220	45601560	LINE|L1|L1ME1	-	chr1	45584064	45615131	STRG.5965.4	+	45584064,45591222,45602254,45604935,45606481,45607320,45613168,45614095,45614292,45615012	45584205,45591270,45602365,45605016,45606591,45608337,45613248,45614181,45614366,45615131	0.965517
testis_male_adult_54_years	chr13	26345157	26345158	26345157	+	RAMPAGE_only	4	4	7	0.259924	2.584963	chr13	26344760	26345182	DNA|TcMar-Tigger|Tigger3b	-	chr13	26382345	26401599	STRG.265264.3	+	26382345,26385210,26393366,26396284,26397152,26400452,26401268,26401465	26383984,26385342,26393510,26396354,26397225,26400550,26401347,26401599	0.571429
testis_male_adult_54_years	chr13	19239630	19239637	19239636	-	RAMPAGE_only	6	6	11	0.408452	3.277613	chr13	19239586	19239800	LTR|ERVL-MaLR|MLT1F	-	chr13	19201636	19227432	PSPC1P1|ENST00000442352.1	-	19201636,19204339,19208482,19219709,19227247	19201822,19204509,19208540,19219775,19227432	1.000000
testis_male_adult_54_years	chr5	105392216	105392249	105392231	+	High_confidence	7	7	36	1.336752	5.014997	chr5	105391971	105393225	LTR|ERV1|LTR2752	-	chr5	105392198	105393330	STRG.124296.1	+	105392198	105393330	0.944444
testis_male_adult_54_years	chr3	112119846	112119847	112119846	+	RAMPAGE_only	44	44	52	1.930865	5.348758	chr3	112119825	112119912	SINE|MIR|MIR3	-	chr3	112111453	112131004	C3orf52|ENST00000467942.2	+	112111453,112112338,112112963,112116641,112119468,112128232	112111780,112112459,112113145,112116867,112119562,112131004	0.576923
testis_male_adult_54_years	chr14	41154559	41154589	41154559	+	High_confidence	5	5	13	0.482716	3.392747	chr14	41153443	41154795	LTR|ERV1|LTR12C	-	chr14	41153926	41157430	STRG.280606.1	+	41153926	41157430	0.615385
testis_male_adult_54_years	chr8	30872014	30872021	30872014	-	RAMPAGE_only	7	7	17	0.631244	4.000000	chr8	30871699	30872020	LTR|ERVL-MaLR|MLT1D-int	-	chr8	30831543	30888706	TEX15|ENST00000638951.1	-	30831543,30836802,30839905,30842003,30858667,30859910,30867264,30874936,30887166,30888635	30833323,30838061,30839964,30849316,30858830,30860057,30867502,30875102,30887311,30888706	0.529412
testis_male_adult_54_years	chr6	125644451	125644499	125644487	-	High_confidence	3	3	23	0.854036	3.268049	chr6	125644268	125645697	LTR|ERV1|LTR12C	+	chr6	125643547	125644602	STRG.151545.1	-	125643547	125644602	0.739130
testis_male_adult_54_years	chr6	108312840	108312851	108312848	+	RAMPAGE_only	5	5	21	0.779772	4.121928	chr6	108312766	108312935	SINE|Alu|FRAM	-	chr6	108317067	108347271	STRG.148977.5	+	108317067,108319616,108323824,108346987	108318373,108319791,108324048,108347271	0.619048
testis_male_adult_54_years	chr1	91952194	91952213	91952194	+	High_confidence	17	24	45	1.670940	4.802530	chr1	91952143	91952350	LINE|L2|L2c	-	chr1	91952161	92014421	BRDT|ENST00000402388.1	+	91952161,91962717,91964626,91968145,91976265,91977042,91978167,91979568,91980642,91980888,91981267,91981617,91991183,91992263,91994082,92002048,92004413,92005118,92014205	91952258,91962946,91964764,91968260,91976438,91977393,91978296,91979757,91980815,91981178,91981381,91981755,91991245,91992314,91994254,92002149,92004619,92005299,92014421	0.600000
testis_male_adult_54_years	chr13	24506413	24506414	24506413	-	High_confidence	807	810	848	31.487945	6.343710	chr13	24506039	24507335	LTR|ERV1|LTR12C	-	chr13	24488987	24506439	STRG.265182.3	-	24488987,24492420,24493595,24494572,24498115,24499300,24500315,24501632,24506032	24490828,24492594,24493733,24494722,24498229,24499376,24500382,24503777,24506439	0.935142
testis_male_adult_54_years	chr7	128648932	128648948	128648947	+	RAMPAGE_only	3	3	8	0.297056	2.807355	chr7	128648951	128649055	DNA|TcMar-Tigger|MER8	+	chr7	128651184	128652334	AC018638.4|ENST00000465971.1	+	128651184	128652334	0.875000
testis_male_adult_54_years	chr3	45022157	45022172	45022171	+	RAMPAGE_only	3	3	7	0.259924	2.807355	chr3	45022099	45022366	DNA|TcMar-Tigger|Tigger3b	-	chr3	45026182	45036071	CLEC3B|ENST00000296130.4	+	45026182,45030826,45035523	45026471,45030925,45036071	1.000000
testis_male_adult_54_years	chr5	176721273	176721274	176721273	+	High_confidence	30	30	32	1.188224	4.440224	chr5	176721103	176721588	LTR|ERV1|LTR12C	+	chr5	176721063	176722581	STRG.133442.1	+	176721063	176722581	0.906250
testis_male_adult_54_years	chr2	200398755	200398788	200398787	+	RAMPAGE_only	19	22	52	1.930865	5.180833	chr2	200398745	200398915	SINE|MIR|MIR3	+	chr2	200393076	200467378	SPATS2L|ENST00000438761.5	+	200393076,200412310,200416378,200419249,200440648,200459768,200467289	200393273,200412419,200416428,200419496,200440784,200459827,200467378	0.807692
testis_male_adult_54_years	chr7	150043615	150043629	150043615	+	RAMPAGE_only	5	5	9	0.334188	2.500000	chr7	150043566	150043646	LINE|L2|L2	+	chr7	150042295	150045092	STRG.177026.6	+	150042295,150043588,150044749	150043239,150043660,150045092	0.555556
testis_male_adult_54_years	chr14	53217839	53217850	53217839	+	High_confidence	2	2	9	0.334188	2.947703	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217954	53786106	AL365295.1|ENST00000648066.1	+	53217954,53313715,53318030,53369451,53687198,53737666,53765657,53769014,53785144,53785727	53218055,53313790,53318138,53369501,53687374,53737766,53765719,53769133,53785250,53786106	0.666667
testis_male_adult_54_years	chr1	247111302	247111318	247111302	-	High_confidence	10	10	26	0.965432	4.440636	chr1	247111182	247111265	SINE|Alu|FLAM_A	-	chr1	247107044	247112226	STRG.28613.1	-	247107044,247109686	247108705,247112226	1.000000
testis_male_adult_54_years	chr7	55862751	55862765	55862760	-	High_confidence	254	294	653	24.247203	5.969209	chr7	55862516	55862760	SINE|MIR|MIRb	-	chr7	55844536	55862755	SEPT14|ENST00000477628.1	-	55844536,55846516,55850786,55861942,55862687	55844718,55846637,55850906,55862011,55862755	0.756508
testis_male_adult_54_years	chr6	157830528	157830558	157830542	-	High_confidence	10	11	32	1.188224	4.726410	chr6	157829920	157830586	LINE|L1|L1MEd	-	chr6	157829142	157830573	AL391863.2|ENST00000411838.1	-	157829142,157830192	157829442,157830573	0.656250
testis_male_adult_54_years	chr17	82207911	82207912	82207911	-	RAMPAGE_only	5	5	7	0.259924	2.584963	chr17	82207808	82208047	LTR|ERVL|MER21A	+	chr17	82188224	82212813	STRG.323191.11	-	82188224,82193755,82195262,82198313,82201537,82206280,82212784	82188419,82194139,82195364,82198422,82201952,82208048,82212813	0.857143
testis_male_adult_54_years	chr4	53782628	53782629	53782628	-	RAMPAGE_only	4	5	7	0.259924	2.584963	chr4	53782268	53782747	LTR|ERVL|LTR33A_	+	chr4	53770471	53771166	STRG.94622.1	-	53770471	53771166	0.571429
testis_male_adult_54_years	chr2	232764305	232764327	232764305	-	High_confidence	35	37	72	2.673505	5.563457	chr2	232764038	232764765	LINE|CR1|L3	+	chr2	232760015	232764425	STRG.59493.1	-	232760015,232761492,232763564	232760654,232761627,232764425	0.902778
testis_male_adult_54_years	chr13	97124145	97124182	97124181	+	RAMPAGE_only	3	3	16	0.594112	3.773557	chr13	97123961	97124271	SINE|Alu|AluSz	+	chr13	97141357	97339016	STRG.274790.5	+	97141357,97275631,97334275	97141907,97276409,97339016	0.625000
testis_male_adult_54_years	chr1	150781553	150781571	150781553	+	High_confidence	6	7	16	0.594112	3.640224	chr1	150780849	150782545	Retroposon|SVA|SVA_F	+	chr1	150781123	150782288	STRG.16855.1	+	150781123	150782288	0.562500
testis_male_adult_54_years	chr4	15817755	15817766	15817755	+	RAMPAGE_only	3	3	8	0.297056	3.000000	chr4	15817764	15819003	LINE|L1|L1PA10	+	chr4	15816595	15840490	CD38|ENST00000510674.1	+	15816595,15824880,15834216,15838091,15840025,15840451	15816640,15824998,15834302,15838165,15840118,15840490	0.500000
testis_male_adult_54_years	chr14	100829453	100829472	100829464	+	High_confidence	8	8	20	0.742640	4.121928	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.700000
testis_male_adult_54_years	chr3	74900283	74900317	74900302	+	High_confidence	9	9	42	1.559544	4.671928	chr3	74899109	74900499	LTR|ERV1|LTR12C	-	chr3	74899897	74985077	STRG.70181.1	+	74899897,74906625,74907430,74962335,74983931	74900502,74906722,74907591,74962477,74985077	0.928571
testis_male_adult_54_years	chr15	34988764	34988792	34988767	-	High_confidence	10	11	31	1.151092	4.349200	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.774194
testis_male_adult_54_years	chr15	100350818	100350854	100350848	+	RAMPAGE_only	69	71	161	5.978254	6.277725	chr15	100350744	100351516	DNA|TcMar-Tigger|Tigger3	-	chr15	100349154	100352049	STRG.301423.1	+	100349154,100350214,100351678	100349676,100350945,100352049	0.627329
testis_male_adult_54_years	chr5	121954312	121954354	121954333	+	RAMPAGE_only	7	8	19	0.705508	4.058814	chr5	121954076	121954490	LTR|ERV1|LTR12E	-	chr5	121961960	122028619	SRFBP1|ENST00000339397.4	+	121961960,121974195,121975314,121994598,122019259,122020087,122022369,122026941	121962068,121974284,121975387,121994670,122019341,122020802,122022407,122028619	0.736842
testis_male_adult_54_years	chr11	32953978	32953993	32953978	+	RAMPAGE_only	4	4	9	0.334188	2.947703	chr11	32953932	32953995	LINE|CR1|L3	-	chr11	32934583	32975630	QSER1|ENST00000524678.1	+	32934583,32953856,32955295,32955987,32957868,32966299,32969045,32973396,32975247	32935435,32954179,32955412,32956121,32958086,32966437,32969143,32973549,32975630	0.888889
testis_male_adult_54_years	chr11	60491450	60491471	60491470	+	RAMPAGE_only	2	2	8	0.297056	2.807355	chr11	60490889	60492415	Retroposon|SVA|SVA_C	+	chr11	60492777	60498062	MS4A12|ENST00000525951.5	+	60492777,60492919,60497312	60492828,60493032,60498062	0.625000
testis_male_adult_54_years	chr2	190340570	190340595	190340589	+	RAMPAGE_only	23	27	66	2.450713	5.577820	chr2	190340365	190340767	LTR|ERVL-MaLR|MSTB	+	chr2	190343469	190371665	INPP1|NM_001128928.1	+	190343469,190348887,190360038,190362626,190366694,190369102,190370843	190343961,190349031,190360306,190362687,190366895,190369277,190371665	0.606061
testis_male_adult_54_years	chr2	216854628	216854629	216854628	-	High_confidence	8	8	10	0.371320	3.169925	chr2	216854555	216854611	SINE|MIR|MIR3	-	chr2	216854388	216855132	AC007557.2|ENST00000440900.1	-	216854388,216854968	216854807,216855132	0.800000
testis_male_adult_54_years	chr9	122406522	122406553	122406522	+	High_confidence	23	23	47	1.745205	4.799896	chr9	122405232	122406719	LTR|ERV1|LTR12C	-	chr9	122406086	122417679	STRG.210441.2	+	122406086,122415713,122416767	122406780,122415782,122417679	0.787234
testis_male_adult_54_years	chr2	69798946	69798947	69798946	-	High_confidence	6	6	7	0.259924	2.584963	chr2	69798831	69799610	LTR|ERV1|LTR19C	-	chr2	69789544	69799032	STRG.39731.5	-	69789544	69799032	0.857143
testis_male_adult_54_years	chr2	55048637	55048654	55048653	-	High_confidence	5	5	13	0.482716	3.584963	chr2	55048572	55048680	DNA|TcMar-Tigger|Tigger3b	-	chr2	54972188	55048666	RTN4|NM_001321862.1	-	54972188,54973562,54973820,54974694,54982514,54987490,55025085,55028163,55048545	54973198,54973621,54973867,54974764,54982653,54987698,55027485,55028220,55048666	0.923077
testis_male_adult_54_years	chr13	86792315	86792364	86792315	+	High_confidence	11	11	75	2.784901	5.682707	chr13	86792081	86793348	LTR|ERV1|LTR12C	+	chr13	86792272	86795768	STRG.273282.2	+	86792272,86794878	86792584,86795768	0.800000
testis_male_adult_54_years	chr16	51017612	51017644	51017632	+	High_confidence	5	5	18	0.668376	3.852169	chr16	51017640	51017830	SINE|MIR|MIRc	+	chr16	51017543	51035771	LINC02127|ENST00000568607.2	+	51017543,51022219,51024807,51035535	51017895,51022276,51025059,51035771	0.888889
testis_male_adult_54_years	chr7	97675628	97675637	97675628	+	High_confidence	4	5	11	0.408452	3.321928	chr7	97675287	97677038	DNA|TcMar-Tigger|Tigger1	+	chr7	97675596	97676760	STRG.169137.1	+	97675596	97676760	0.909091
testis_male_adult_54_years	chr11	74002285	74002306	74002305	-	High_confidence	6	6	13	0.482716	3.584963	chr11	74002108	74002357	LINE|L2|L2c	+	chr11	74001477	74002254	UCP3|ENST00000545271.1	-	74001477,74001739	74001526,74002254	0.615385
testis_male_adult_54_years	chr5	96934396	96934438	96934437	+	RAMPAGE_only	2	2	9	0.334188	3.000000	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.777778
testis_male_adult_54_years	chr7	33351851	33351886	33351873	+	High_confidence	5	5	20	0.742640	3.684184	chr7	33351872	33352111	LTR|ERV1|LTR27B	-	chr7	33351926	33388007	BBS9|ENST00000627264.1	+	33351926,33357854,33367766,33383665,33387991	33352049,33357995,33367862,33383838,33388007	0.950000
testis_male_adult_54_years	chr1	35146599	35146621	35146599	-	High_confidence	6	6	10	0.371320	3.121928	chr1	35145875	35146564	LTR|ERV1|HERV3-int	-	chr1	35146312	35146719	STRG.4284.1	-	35146312	35146719	0.800000
testis_male_adult_54_years	chr7	48203264	48203284	48203264	+	High_confidence	3	4	15	0.556980	3.521641	chr7	48201768	48203479	LTR|ERV1|LTR12C	-	chr7	48202769	48227583	STRG.163884.1	+	48202769,48219353,48221280,48227261	48203510,48219505,48221309,48227583	0.866667
testis_male_adult_54_years	chr7	64031884	64031885	64031884	+	High_confidence	11	11	13	0.482716	3.251629	chr7	64031905	64032157	SINE|Alu|AluSq	+	chr7	64032030	64033002	STRG.165161.1	+	64032030	64033002	0.769231
testis_male_adult_54_years	chr17	50738161	50738171	50738161	+	RAMPAGE_only	5	5	9	0.334188	2.947703	chr17	50738089	50739377	LINE|L1|HAL1	+	chr17	50719628	50751004	LUC7L3|ENST00000508482.5	+	50719628,50740305,50741101,50741656,50743705,50744651,50745719,50746541,50750500,50750723	50719831,50740345,50741246,50741731,50743810,50744813,50746003,50746702,50750641,50751004	0.666667
testis_male_adult_54_years	chr19	12137696	12137706	12137705	-	High_confidence	33	50	97	3.601805	5.656233	chr19	12137329	12137812	LTR|ERVL|MER54A	+	chr19	12133690	12137702	ZNF20|ENST00000485451.1	-	12133690,12135499,12135768,12136850,12137657	12133985,12135560,12135895,12136876,12137702	0.752577
testis_male_adult_54_years	chr14	30577737	30577761	30577760	+	High_confidence	252	260	442	16.412349	7.022226	chr14	30577335	30577821	LTR|ERVL-MaLR|MLT1F1	-	chr14	30577755	30593639	G2E3|ENST00000547532.5	+	30577755,30581075,30586717,30589382,30592322,30593473	30577846,30581116,30586815,30589484,30592447,30593639	0.660633
testis_male_adult_54_years	chr15	80059915	80059933	80059918	+	High_confidence	122	138	313	11.622319	5.591824	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.945687
testis_male_adult_54_years	chr2	112809675	112809683	112809675	+	High_confidence	6	6	13	0.482716	3.392747	chr2	112809518	112809872	LTR|ERVL-MaLR|MSTA	+	chr2	112808980	112814826	STRG.44133.4	+	112808980	112814826	0.769231
testis_male_adult_54_years	chr3	129559620	129559640	129559620	-	High_confidence	4	4	9	0.334188	3.000000	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	0.777778
testis_male_adult_54_years	chr12	130249636	130249702	130249676	+	High_confidence	11	11	62	2.302185	5.183641	chr12	130249452	130249963	LTR|ERV1|MER66A	+	chr12	130249678	130266725	AC026336.2|ENST00000563922.1	+	130249678,130266302	130250018,130266725	0.725806
testis_male_adult_54_years	chrX	40622092	40622134	40622112	-	High_confidence	9	9	25	0.928300	4.103465	chrX	40622087	40622573	LINE|L1|L1MC4	+	chrX	40621717	40622121	STRG.362047.1	-	40621717	40622121	0.880000
testis_male_adult_54_years	chrX	70162341	70162382	70162341	+	RAMPAGE_only	13	13	23	0.854036	3.827910	chrX	70161793	70162664	LINE|L1|L1MC3	+	chrX	70133467	70166324	IGBP1|NM_001551.2	+	70133467,70133722,70134522,70146632,70148760,70150209,70165832	70133540,70134135,70134816,70146828,70148840,70150322,70166324	0.956522
testis_male_adult_54_years	chr17	42662964	42663008	42662964	+	RAMPAGE_only	10	14	34	1.262488	4.712319	chr17	42662805	42662965	LTR|ERVL|MER21A	+	chr17	42659306	42666822	STRG.317454.8	+	42659306,42659833,42660148,42660638,42662972,42663376,42665475,42666086,42666322,42666602	42659552,42659946,42660316,42660707,42663052,42663503,42665827,42666239,42666484,42666822	0.911765
testis_male_adult_54_years	chr8	10529388	10529400	10529388	+	High_confidence	3	4	10	0.371320	3.321928	chr8	10529358	10529418	SINE|MIR|MIRb	+	chr8	10529411	10545198	PRSS55|ENST00000518641.1	+	10529411,10531294,10532905,10540257,10544971	10529699,10531712,10533048,10541555,10545198	0.800000
testis_male_adult_54_years	chr11	34055585	34055616	34055585	-	RAMPAGE_only	12	12	43	1.596676	5.041011	chr11	34055329	34055626	SINE|Alu|AluSq10	-	chr11	34044111	34053239	STRG.233092.1	-	34044111,34050670,34052032,34052842	34045375,34051033,34052621,34053239	0.767442
testis_male_adult_54_years	chr20	25408264	25408284	25408264	-	High_confidence	7	7	24	0.891168	4.088779	chr20	25408206	25408442	SINE|MIR|MIR	+	chr20	25402484	25408326	STRG.343504.1	-	25402484,25407764	25402837,25408326	0.666667
testis_male_adult_54_years	chr6	6940553	6940557	6940553	-	High_confidence	7	7	13	0.482716	3.251629	chr6	6939908	6941152	LTR|ERV1|LTR12C	+	chr6	6935677	6940586	STRG.135319.1	-	6935677,6939831	6935717,6940586	0.846154
testis_male_adult_54_years	chr10	67012235	67012266	67012265	+	High_confidence	27	27	101	3.750333	6.359105	chr10	67012215	67012300	SINE|MIR|MIR3	-	chr10	67012265	67101551	LRRTM3|NR_111909.1	+	67012265,67012983,67097586	67012352,67013026,67101551	0.524752
testis_male_adult_54_years	chr12	50937403	50937438	50937403	+	High_confidence	7	7	26	0.965432	4.334963	chr12	50937126	50938658	LTR|ERV1|MER52A	-	chr12	50937397	50938213	STRG.253282.1	+	50937397	50938213	0.653846
testis_male_adult_54_years	chr18	72209396	72209418	72209396	-	High_confidence	7	8	28	1.039696	4.363713	chr18	72208942	72210364	LTR|ERV1|LTR12C	+	chr18	71937265	72209702	STRG.329997.1	-	71937265,71938240,71944478,72208931	71937406,71938275,71944602,72209702	0.678571
testis_male_adult_54_years	chr8	126714019	126714020	126714019	-	High_confidence	98	99	110	4.084521	5.761738	chr8	126713610	126715199	LTR|ERV1|LTR12C	-	chr8	126713596	126714009	STRG.194088.1	-	126713596	126714009	0.863636
testis_male_adult_54_years	chr14	29064555	29064577	29064576	-	High_confidence	33	42	112	4.158785	5.723319	chr14	29064362	29064725	LTR|ERVL-MaLR|MLT1A0	-	chr14	29063751	29064580	STRG.278663.1	-	29063751	29064580	0.669643
testis_male_adult_54_years	chr7	54330669	54330700	54330669	+	High_confidence	8	9	18	0.668376	3.969816	chr7	54329994	54330847	LTR|ERVL|MER21C	-	chr7	54330696	54349845	LINC01445|NR_120516.1	+	54330696,54347293,54349364	54330818,54347365,54349845	0.666667
testis_male_adult_54_years	chrY	4036475	4036502	4036501	+	High_confidence	4	4	14	0.519848	3.664498	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	0.714286
testis_male_adult_54_years	chr3	149385801	149385802	149385801	-	High_confidence	6	6	8	0.297056	2.500000	chr3	149385643	149386323	LTR|ERV1|MER51A	-	chr3	149384178	149385800	AC108751.4|ENST00000462931.1	-	149384178,149385624	149385003,149385800	0.875000
testis_male_adult_54_years	chr9	63297019	63297023	63297019	-	High_confidence	11	11	22	0.816904	3.821928	chr9	63296399	63297638	LTR|ERV1|LTR12C	+	chr9	63296337	63297074	STRG.202637.1	-	63296337	63297074	0.727273
testis_male_adult_54_years	chr12	14530138	14530139	14530138	+	High_confidence	838	838	968	35.943787	7.062150	chr12	14529937	14530469	LTR|ERVL-MaLR|MLT1F1	+	chr12	14530150	14533229	AC008114.1|ENST00000544122.1	+	14530150,14531041,14533062	14530241,14531210,14533229	0.734504
testis_male_adult_54_years	chr2	200199761	200199765	200199764	-	High_confidence	36	38	75	2.784901	5.915852	chr2	200199607	200200382	LINE|L1|L1PBa	+	chr2	200195874	200199758	STRG.55681.1	-	200195874,200199544	200196531,200199758	0.560000
testis_male_adult_54_years	chr3	6507748	6507781	6507748	+	High_confidence	6	6	27	1.002564	3.954530	chr3	6507654	6507944	SINE|Alu|AluYi6	-	chr3	6507765	6508238	STRG.62046.1	+	6507765	6508238	0.666667
testis_male_adult_54_years	chr2	213923806	213923839	213923806	+	RAMPAGE_only	47	48	152	5.644066	6.245872	chr2	213921220	213924593	LINE|L1|L1PA14	-	chr2	213284454	214241376	SPAG16|ENST00000452556.5	+	213284454,213296063,213297261,213340162,213350527,213364075,213375009,213489962,213862484,213929959,214013950,214108195,214149139,214238135	213284619,213296128,213297357,213340270,213350645,213364145,213375119,213490090,213862628,213930145,214014077,214108261,214149266,214241376	0.605263
testis_male_adult_54_years	chr11	90167854	90167961	90167960	+	RAMPAGE_only	113	115	278	10.322699	5.378949	chr11	90167016	90168370	LTR|ERV1|LTR12C	+	chr11	90134728	90192611	STRG.238665.5	+	90134728,90135558,90147329,90149005,90150481,90152297,90158144,90162948,90163309,90163534,90164281,90170068,90173823,90175971,90177852,90181619,90182915,90191557	90134840,90135670,90147516,90149107,90150607,90152484,90158238,90163034,90163429,90163617,90168992,90170136,90173915,90176062,90178117,90181701,90183008,90192611	0.992806
testis_male_adult_54_years	chr12	88055097	88055098	88055097	-	RAMPAGE_only	8	8	9	0.334188	2.500000	chr12	88054554	88055473	LINE|L2|L2a	-	chr12	88049019	88056890	STRG.258112.7	-	88049019,88050353,88053651,88055575	88049414,88050433,88053746,88056890	0.888889
testis_male_adult_54_years	chr1	195722378	195722382	195722381	-	High_confidence	58	59	109	4.047389	5.149860	chr1	195721970	195723453	LTR|ERV1|LTR12C	-	chr1	195462335	195722413	STRG.22170.1	-	195462335,195470977,195568876,195690604,195721819	195462590,195471089,195568995,195690765,195722413	0.963303
testis_male_adult_54_years	chr19	10690483	10690593	10690535	+	RAMPAGE_only	6	6	53	1.967997	5.043682	chr19	10690378	10690577	DNA|hAT-Charlie|MER20	+	chr19	10687604	10692398	ILF3|ENST00000586544.1	+	10687604,10688549,10689178	10688114,10688678,10692398	1.000000
testis_male_adult_54_years	chr7	101308276	101308294	101308293	+	High_confidence	3	4	7	0.259924	2.521641	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	1.000000
testis_male_adult_54_years	chr1	162510480	162510495	162510480	+	RAMPAGE_only	3	3	8	0.297056	2.521641	chr1	162510092	162511168	LINE|L1|L1MA6	-	chr1	162498084	162524054	UHMK1|ENST00000282169.8	+	162498084,162499954,162503753,162512499,162512724,162518101,162522403	162498268,162501104,162503848,162512576,162512823,162518190,162524054	0.625000
testis_male_adult_54_years	chr3	13653824	13653875	13653862	-	High_confidence	13	13	62	2.302185	5.545331	chr3	13653625	13654341	LINE|L2|L2a	+	chr3	13650259	13653891	STRG.63209.1	-	13650259,13651798,13653772	13650817,13651975,13653891	0.725806
testis_male_adult_54_years	chr1	179528386	179528387	179528386	+	RAMPAGE_only	4	4	6	0.222792	2.584963	chr1	179528412	179528446	LINE|CR1|L3	+	chr1	179534492	179554713	AXDND1|ENST00000484455.1	+	179534492,179554511	179534962,179554713	0.666667
testis_male_adult_54_years	chr3	133791669	133791675	133791674	+	RAMPAGE_only	9	12	15	0.556980	3.807355	chr3	133789908	133795570	LTR|ERV1|MER51-int	+	chr3	133745955	133796640	TF|ENST00000402696.8	+	133745955,133748411,133753594,133754494,133755362,133756281,133756830,133757768,133759174,133764181,133764874,133766277,133768028,133770507,133775432,133777048,133778585	133746483,133748584,133753703,133754671,133755495,133756337,133757009,133757946,133759329,133764275,133764907,133766433,133768164,133770572,133775617,133777238,133796640	0.933333
testis_male_adult_54_years	chr21	37373128	37373136	37373135	+	RAMPAGE_only	13	13	21	0.779772	4.011365	chr21	37373099	37373287	SINE|MIR|MIRc	+	chr21	37375093	37512921	DYRK1A|ENST00000398960.7	+	37375093,37420298,37472683,37478180,37480637,37486466,37490174,37493016,37496117,37505282,37506098,37511910	37375117,37420384,37472880,37478300,37480826,37486614,37490461,37493163,37496258,37505589,37506223,37512921	0.619048
testis_male_adult_54_years	chr8	94950264	94950265	94950264	+	RAMPAGE_only	13	13	19	0.705508	3.683542	chr8	94950149	94950305	SINE|MIR|MIRc	+	chr8	94948645	94985443	STRG.190105.11	+	94948645,94950770,94957994,94975317,94975816,94980858,94984034	94950359,94950809,94958179,94975415,94975983,94980973,94985443	0.736842
testis_male_adult_54_years	chr8	109329979	109330003	109330002	+	High_confidence	24	24	69	2.562109	5.442590	chr8	109329908	109330059	LINE|L2|L2b	-	chr8	109329987	109343584	STRG.192104.6	+	109329987,109336127,109339319,109340488,109343404	109330624,109336204,109339390,109340563,109343584	0.942029
testis_male_adult_54_years	chr9	20658499	20658516	20658515	+	High_confidence	3	3	6	0.222792	2.584963	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.833333
testis_male_adult_54_years	chr8	69001509	69001532	69001531	-	High_confidence	22	27	72	2.673505	5.674051	chr8	69001297	69001689	LTR|ERVL-MaLR|MLT1B	-	chr8	68913162	69001512	LINC01592|ENST00000524286.1	-	68913162,68924386,68954057,69001383	68913540,68924495,68954162,69001512	0.680556
testis_male_adult_54_years	chr16	20679278	20679311	20679310	+	RAMPAGE_only	2	2	8	0.297056	2.807355	chr16	20678043	20681722	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.500000
testis_male_adult_54_years	chr13	31852086	31852112	31852111	+	RAMPAGE_only	4	4	12	0.445584	3.459432	chr13	31851982	31852512	LTR|ERVL|MER74A	-	chr13	31869103	31874663	STRG.265819.1	+	31869103	31874663	0.750000
testis_male_adult_54_years	chr13	102278293	102278312	102278293	+	High_confidence	9	10	22	0.816904	4.106603	chr13	102278225	102278320	SINE|MIR|MIR3	-	chr13	102278318	102298248	STRG.275436.1	+	102278318,102297886	102278399,102298248	0.500000
testis_male_adult_54_years	chr4	158201456	158201490	158201456	-	High_confidence	96	97	342	12.699148	6.906157	chr4	158201406	158201936	LTR|ERVL-MaLR|MLT1F	+	chr4	158199104	158201504	STRG.106772.1	-	158199104,158200323,158201440	158199350,158200458,158201504	0.523392
testis_male_adult_54_years	chr9	128740781	128740801	128740781	-	RAMPAGE_only	4	4	11	0.408452	3.121928	chr9	128740596	128740754	LINE|RTE-X|L4_C_Mam	-	chr9	128729785	128771893	ZER1|ENST00000291900.6	-	128729785,128733425,128735333,128739930,128740771,128741534,128741799,128742529,128750615,128751121,128751412,128752672,128753163,128753808,128755407,128771580	128731394,128733528,128735431,128740119,128740887,128741654,128741841,128742745,128750789,128751268,128751527,128752849,128753600,128753959,128755659,128771893	0.909091
testis_male_adult_54_years	chr16	30002552	30002566	30002552	+	RAMPAGE_only	4	4	19	0.705508	4.037401	chr16	30001976	30002726	LINE|L2|L2a	-	chr16	29996273	30005790	INO80E|ENST00000540562.1	+	29996273,29996546,29996807,30000757,30000928,30001211,30003435,30003649,30004554,30005220	29996391,29996617,29996860,30000836,30001040,30003013,30003526,30003714,30004657,30005790	0.947368
testis_male_adult_54_years	chr11	5938103	5938139	5938103	-	RAMPAGE_only	40	46	159	5.903990	5.615397	chr11	5937929	5938354	LTR|ERV1|HERV-Fc1_LTR2	+	chr11	5879220	5883528	STRG.229676.1	-	5879220	5883528	0.603774
testis_male_adult_54_years	chr10	78424329	78424335	78424334	+	High_confidence	32	32	49	1.819469	4.993641	chr10	78424051	78424535	LTR|ERV1|LTR12_	+	chr10	78424343	78471473	STRG.221579.1	+	78424343,78471202	78424690,78471473	0.775510
testis_male_adult_54_years	chr22	22506931	22506949	22506948	-	RAMPAGE_only	6	7	12	0.445584	3.584963	chr22	22506858	22507363	LTR|ERVL-MaLR|MLT1F	+	chr22	22484857	22508733	ZNF280B|ENST00000619852.2	-	22484857,22486860,22494062,22507809,22508658	22485978,22489466,22494180,22507870,22508733	1.000000
testis_male_adult_54_years	chr10	394215	394246	394245	-	RAMPAGE_only	5	6	12	0.445584	3.459432	chr10	393806	394279	LINE|L1|L1MA8	+	chr10	274189	486558	DIP2C|ENST00000381496.7	-	274189,281199,283271,286272,288363,310030,327005,329432,341198,344808,344998,348640,349330,356425,357827,362489,363196,364373,366274,369493,382646,384026,384545,387744,389990,390263,390739,399108,408925,413912,415768,419064,422823,440870,472438,486458	277577,281323,283446,286347,288421,310092,327176,329601,341329,344918,345110,348762,349454,356506,357937,362691,363311,364582,366411,369633,382761,384146,384639,387809,390093,390373,390863,399219,409017,414110,415888,419199,423033,440996,472549,486558	0.666667
testis_male_adult_54_years	chr9	123236890	123236968	123236890	-	RAMPAGE_only	5	5	24	0.891168	3.834963	chr9	123236851	123237154	SINE|Alu|AluSz	+	chr9	123179006	123213908	STRBP|ENST00000479114.2	-	123179006,123184131,123212584,123213588	123179227,123184298,123212708,123213908	0.750000
testis_male_adult_54_years	chr19	52587558	52587588	52587581	+	High_confidence	11	11	39	1.448148	5.080274	chr19	52587296	52587633	LINE|L2|L2a	+	chr19	52587547	52597345	STRG.339186.9	+	52587547,52587790,52588531,52592101,52595616	52587684,52587925,52588613,52592228,52597345	0.820513
testis_male_adult_54_years	chr22	15658146	15658174	15658146	+	RAMPAGE_only	3	3	10	0.371320	2.521928	chr22	15657997	15658563	LTR|ERV1|MER4-int	+	chr22	15660828	15667231	STRG.353423.5	+	15660828	15667231	0.700000
testis_male_adult_54_years	chr17	3472366	3472401	3472366	+	High_confidence	4	4	19	0.705508	3.947703	chr17	3472412	3472594	SINE|MIR|MIRb	+	chr17	3472373	3476395	ASPA|ENST00000577034.1	+	3472373,3475417,3476133	3472462,3475629,3476395	0.526316
testis_male_adult_54_years	chr7	39700603	39700615	39700614	+	High_confidence	19	19	34	1.262488	3.801109	chr7	39700154	39700741	LTR|ERVL-MaLR|MLT1G1	-	chr7	39700879	39706302	RALA|ENST00000466491.1	+	39700879,39706122	39701019,39706302	0.794118
testis_male_adult_54_years	chr5	157696224	157696237	157696224	+	RAMPAGE_only	3	3	15	0.556980	3.664498	chr5	157696042	157696456	LTR|ERV1|MER41-int	+	chr5	157703323	157703714	STRG.130974.1	+	157703323	157703714	0.666667
testis_male_adult_54_years	chr6	92724542	92724577	92724576	+	High_confidence	16	16	35	1.299620	4.729283	chr6	92723324	92725006	LTR|ERV1|LTR12C	+	chr6	92724700	92756407	STRG.146905.1	+	92724700,92756213	92725056,92756407	0.942857
testis_male_adult_54_years	chr2	241326681	241326687	241326681	+	RAMPAGE_only	30	30	75	2.784901	5.263665	chr2	241326334	241326806	LTR|ERVL-MaLR|MLT1F	+	chr2	241324153	241337716	SEPT2|ENST00000449239.5	+	241324153,241325992,241335125,241335974,241337381,241337672	241324241,241326113,241335212,241336098,241337516,241337716	0.560000
testis_male_adult_54_years	chr9	111783948	111783977	111783959	-	High_confidence	273	278	916	34.012922	7.258555	chr9	111783697	111784151	LTR|ERVL|MER70A	-	chr9	111686572	111783971	STRG.209196.6	-	111686572,111691550,111693798,111694230,111699953,111702104,111705246,111706567,111707854,111713099,111718183,111723791,111727632,111738279,111741475,111746233,111748091,111756324,111758083,111758694,111775790,111780929,111783798	111686870,111692511,111693948,111694362,111700047,111702226,111705364,111706746,111707924,111714623,111722585,111723911,111728049,111738522,111741570,111746342,111748199,111756478,111758195,111758848,111775975,111781017,111783971	0.895197
testis_male_adult_54_years	chr4	106321043	106321066	106321065	+	RAMPAGE_only	2	2	6	0.222792	2.584963	chr4	106320774	106322302	Retroposon|SVA|SVA_A	+	chr4	106316506	106332052	STRG.99723.4	+	106316506,106320865,106324984,106327450,106328075,106331671	106316594,106321451,106325118,106327564,106328243,106332052	1.000000
testis_male_adult_54_years	chr15	92710709	92710731	92710709	-	High_confidence	7	11	14	0.519848	3.664498	chr15	92710299	92711583	LTR|ERV1|LTR12C	-	chr15	92710006	92710680	STRG.299759.5	-	92710006	92710680	0.785714
testis_male_adult_54_years	chr13	65149896	65149971	65149926	+	High_confidence	6	7	59	2.190789	5.280087	chr13	65149668	65150113	LTR|ERV1|LTR12C	-	chr13	65149926	65150615	STRG.270446.1	+	65149926	65150615	0.593220
testis_male_adult_54_years	chr14	29064670	29064691	29064677	+	High_confidence	8	8	26	0.965432	4.386842	chr14	29064362	29064725	LTR|ERVL-MaLR|MLT1A0	-	chr14	29064781	29066101	STRG.278644.1	+	29064781	29066101	0.576923
testis_male_adult_54_years	chr2	81985973	81985974	81985973	+	High_confidence	184	185	196	7.277874	5.970913	chr2	81984998	81986388	LTR|ERV1|LTR12C	+	chr2	81985989	81986981	STRG.41043.1	+	81985989	81986981	0.959184
testis_male_adult_54_years	chr14	96663743	96663780	96663779	+	High_confidence	12	12	39	1.448148	4.375263	chr14	96663592	96664107	LTR|ERVL-MaLR|MLT1J	+	chr14	96663984	96664310	STRG.288444.1	+	96663984	96664310	0.794872
testis_male_adult_54_years	chr3	17860945	17860949	17860948	+	High_confidence	3	4	6	0.222792	2.584963	chr3	17858274	17861391	LINE|L1|L1HS	-	chr3	17860790	18041541	STRG.64191.1	+	17860790,18013654,18016617,18041448	17861402,18013774,18016711,18041541	0.666667
testis_male_adult_54_years	chr13	42999632	42999696	42999657	+	RAMPAGE_only	21	21	148	5.495538	6.068675	chr13	42999404	43000000	LTR|ERVL|MER70B	+	chr13	43023202	43114224	DNAJC15|ENST00000379221.3	+	43023202,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43114224	0.898649
testis_male_adult_54_years	chr11	73404325	73404479	73404351	-	RAMPAGE_only	11	11	64	2.376449	4.647368	chr11	73404305	73404446	SINE|MIR|MIRc	+	chr11	73400477	73598189	FAM168A|NM_001286051.1	-	73400477,73407512,73419873,73430689,73468404,73597922	73406744,73407643,73419999,73430770,73468492,73598189	1.000000
testis_male_adult_54_years	chr2	209387354	209387392	209387391	-	High_confidence	19	20	40	1.485280	4.580023	chr2	209387196	209388502	LTR|ERV1|LTR12C	+	chr2	209370105	209387552	STRG.56816.1	-	209370105,209387179	209370194,209387552	0.600000
testis_male_adult_54_years	chr16	89958287	89958317	89958316	+	High_confidence	3	3	11	0.408452	3.095795	chr16	89958222	89958381	LTR|ERVL-MaLR|MLT1K	-	chr16	89958350	89959365	DEF8|ENST00000562044.1	+	89958350,89959013	89958533,89959365	0.818182
testis_male_adult_54_years	chr19	51795150	51795187	51795162	+	High_confidence	6	6	28	1.039696	4.593069	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.892857
testis_male_adult_54_years	chr8	143648296	143648301	143648296	+	RAMPAGE_only	10	10	23	0.854036	4.368523	chr8	143647461	143648995	LINE|L2|L2a	-	chr8	143649659	143656418	ZNF623|ENST00000501748.3	+	143649659	143656418	0.826087
testis_male_adult_54_years	chr12	77777459	77777504	77777470	+	High_confidence	13	13	44	1.633808	4.516028	chr12	77777074	77777666	DNA|TcMar-Tigger|MER44D	-	chr12	77777408	77778126	STRG.256827.1	+	77777408	77778126	0.795455
testis_male_adult_54_years	chr3	156673847	156673891	156673847	-	High_confidence	7	7	23	0.854036	4.142915	chr3	156673846	156673936	LINE|L2|L2a	+	chr3	156671863	156673933	TIPARP-AS1|ENST00000478005.1	-	156671863,156673646	156672130,156673933	0.869565
testis_male_adult_54_years	chr6	28444849	28444850	28444849	-	High_confidence	167	171	188	6.980818	4.910442	chr6	28444417	28445193	LTR|ERV1|LTR12	-	chr6	28420545	28444843	STRG.139287.1	-	28420545,28424342,28426603,28434451,28435459,28435858,28443398	28423840,28426405,28432051,28435078,28435607,28436343,28444843	0.962766
testis_male_adult_54_years	chr11	43947162	43947165	43947164	-	High_confidence	6	8	10	0.371320	3.169925	chr11	43946971	43947375	LTR|ERVL-MaLR|MSTB	-	chr11	43943786	43947206	AC087521.1|ENST00000501541.1	-	43943786,43947051	43945676,43947206	0.800000
testis_male_adult_54_years	chr2	54509261	54509307	54509279	+	RAMPAGE_only	4	4	12	0.445584	3.277613	chr2	54508107	54509542	LTR|ERV1|HERVH-int	-	chr2	54558393	54662308	SPTBN1|NM_178313.2	+	54558393,54599091,54612160,54616206,54617607,54618077,54621399,54622299,54623478,54624803,54625931,54628096,54628932,54629891,54630854,54632565,54637712,54642982,54644322,54645228,54645927,54646193,54647130,54648985,54649614,54653608,54655069,54655913,54657849,54659153,54659935	54558887,54599243,54612334,54616298,54617688,54618193,54621512,54622487,54623596,54624962,54626234,54628250,54629803,54630029,54631611,54632768,54637803,54643129,54644586,54645453,54646017,54646475,54647261,54649190,54649989,54653853,54655208,54655998,54658046,54659266,54662308	0.750000
testis_male_adult_54_years	chr5	8012376	8012377	8012376	+	High_confidence	29	30	38	1.411016	4.836592	chr5	8012296	8012709	LTR|ERVL-MaLR|MSTB	-	chr5	8012362	8014625	STRG.112087.1	+	8012362,8013822	8012424,8014625	0.657895
testis_male_adult_54_years	chr20	44450569	44450601	44450584	-	High_confidence	61	62	137	5.087086	6.143193	chr20	44450509	44450885	LTR|ERVL|LTR33	+	chr20	44448776	44450557	LINC01430|NR_109893.1	-	44448776,44449959,44450536	44449054,44450090,44450557	0.802920
testis_male_adult_54_years	chr1	89127465	89127470	89127465	-	High_confidence	3	4	9	0.334188	3.169925	chr1	89127018	89128609	LTR|ERV1|LTR12C	-	chr1	89110186	89127414	STRG.12027.3	-	89110186,89112471,89114015,89116991,89117576,89120178,89121142,89121776,89125862,89126801	89110266,89112684,89114296,89117234,89117773,89120288,89121270,89121983,89126062,89127414	1.000000
testis_male_adult_54_years	chr12	130070108	130070136	130070114	-	High_confidence	8	8	34	1.262488	4.852169	chr12	130069857	130070374	LTR|ERVL-MaLR|MLT1L	-	chr12	130065588	130070106	STRG.263520.1	-	130065588,130067156,130068135,130068365	130066652,130067347,130068248,130070106	0.970588
testis_male_adult_54_years	chr19	48994931	48994932	48994931	+	RAMPAGE_only	25	27	27	1.002564	4.356558	chr19	48994647	48994932	SINE|Alu|AluSz	+	chr19	48993909	49009882	RUVBL2|ENST00000593570.5	+	48993909,48999318,49001348,49003278,49004276,49007017,49007301,49009775	48993923,48999373,49001590,49003334,49004418,49007147,49007368,49009882	0.851852
testis_male_adult_54_years	chr11	72088312	72088380	72088379	+	High_confidence	9	11	34	1.262488	4.734522	chr11	72088230	72088402	DNA|hAT-Tip100|MamTip2	-	chr11	72088352	72096890	LRTOMT|ENST00000615940.4	+	72088352,72093495,72094947,72095378	72088380,72093701,72095096,72096890	0.764706
testis_male_adult_54_years	chr1	2814055	2814056	2814055	+	High_confidence	240	288	305	11.325263	6.251964	chr1	2813098	2814487	LTR|ERV1|LTR12C	+	chr1	2814042	2817769	STRG.1394.2	+	2814042,2817500	2815044,2817769	0.970492
testis_male_adult_54_years	chr3	48055315	48055339	48055338	-	RAMPAGE_only	5	5	15	0.556980	3.521641	chr3	48055241	48056610	Retroposon|SVA|SVA_F	+	chr3	48038029	48059508	STRG.67322.1	-	48038029,48055909,48057105	48055869,48056789,48059508	0.666667
testis_male_adult_54_years	chr12	6132922	6132944	6132943	-	High_confidence	6	8	15	0.556980	3.521641	chr12	6132431	6133983	LTR|ERV1|LTR12C	+	chr12	6128337	6132975	STRG.247383.12	-	6128337,6129003,6132263	6128601,6129124,6132975	0.666667
testis_male_adult_54_years	chr6	118651563	118651632	118651625	-	High_confidence	320	328	1418	52.653192	7.532345	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.971791
testis_male_adult_54_years	chr6	163054160	163054184	163054163	-	High_confidence	22	22	81	3.007693	5.946928	chr6	163054120	163054507	LTR|ERVL-MaLR|MLT1B	+	chr6	163042979	163054161	PACRG-AS2|NR_110871.1	-	163042979,163046583,163051259,163053924	163043169,163046683,163052032,163054161	0.925926
testis_male_adult_54_years	chr6	15758251	15758262	15758251	-	High_confidence	3	3	14	0.519848	3.546594	chr6	15757782	15759321	LTR|ERV1|LTR12C	-	chr6	15749212	15758215	STRG.136858.2	-	15749212,15757634	15749999,15758215	0.928571
testis_male_adult_54_years	chr5	80083652	80083665	80083664	-	High_confidence	8	8	20	0.742640	4.121928	chr5	80083549	80083816	LINE|L2|L2c	+	chr5	80066348	80083665	CTD-2201I18.1|NR_109930.1	-	80066348,80068513,80071731,80072085,80072507,80080102,80082359,80083499	80067881,80068774,80071891,80072223,80072665,80080224,80082537,80083665	0.800000
testis_male_adult_54_years	chr13	27445105	27445120	27445105	-	RAMPAGE_only	10	11	23	0.854036	4.436605	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.869565
testis_male_adult_54_years	chr8	30732596	30732617	30732614	+	High_confidence	7	7	27	1.002564	4.026987	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30732618	30751518	UBXN8|ENST00000522968.1	+	30732618,30751395	30733308,30751518	0.888889
testis_male_adult_54_years	chr9	112413898	112413913	112413898	-	RAMPAGE_only	8	8	21	0.779772	4.201841	chr9	112413709	112414293	LTR|ERV1|LTR10C	-	chr9	112401676	112402719	STRG.209312.1	-	112401676	112402719	0.904762
testis_male_adult_54_years	chr17	64179424	64179425	64179424	+	High_confidence	52	52	55	2.042261	4.948143	chr17	64179079	64179620	LTR|ERV1|LTR12F	+	chr17	64179446	64180146	STRG.320199.1	+	64179446	64180146	0.927273
testis_male_adult_54_years	chr3	193614814	193614861	193614814	+	High_confidence	4	5	18	0.668376	3.683542	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	1.000000
testis_male_adult_54_years	chr10	65570459	65570466	65570465	+	High_confidence	4	4	8	0.297056	2.750000	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570501	65585801	LINC01515|ENST00000599409.5	+	65570501,65571424,65572934,65585484,65585664	65570759,65571579,65573056,65585567,65585801	0.625000
testis_male_adult_54_years	chr17	43027194	43027257	43027194	+	RAMPAGE_only	9	9	32	1.188224	4.415061	chr17	43027173	43027300	LINE|CR1|X6A_LINE	-	chr17	43025955	43029224	STRG.317676.2	+	43025955,43027182,43028060,43028431,43029089	43026047,43027292,43028195,43028676,43029224	0.750000
testis_male_adult_54_years	chr16	66451734	66451754	66451746	+	High_confidence	9	9	23	0.854036	4.186704	chr16	66451604	66451822	SINE|MIR|MIRb	-	chr16	66451753	66470584	STRG.308131.2	+	66451753,66469601	66452177,66470584	0.869565
testis_male_adult_54_years	chr4	20697886	20697955	20697932	+	RAMPAGE_only	19	19	48	1.782337	5.058303	chr4	20697627	20697990	LTR|ERVL-MaLR|MLT1A0	-	chr4	20696281	20752907	PACRGL|ENST00000471979.6	+	20696281,20704465,20704659,20707802,20709682,20712787,20713431,20724807,20727284,20752564	20696513,20704533,20704814,20707870,20709773,20712922,20713539,20724888,20727397,20752907	0.791667
testis_male_adult_54_years	chr2	191682487	191682490	191682487	+	RAMPAGE_only	2	2	7	0.259924	2.521641	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678146	191686157	STRG.54379.8	+	191678146,191678989,191681945,191684229,191685598	191678241,191679128,191683804,191684296,191686157	1.000000
testis_male_adult_54_years	chr2	190760500	190760501	190760500	-	High_confidence	458	461	494	18.343213	6.938922	chr2	190760093	190761528	LTR|ERV1|LTR12C	-	chr2	190753787	190760514	STRG.54026.3	-	190753787,190760091	190754559,190760514	0.809717
testis_male_adult_54_years	chr3	180868136	180868182	180868181	+	High_confidence	23	23	85	3.156221	5.968099	chr3	180868024	180868652	LTR|ERV1|LTR1C1	-	chr3	180868155	180948783	FXR1|ENST00000484790.5	+	180868155,180933333,180935137,180947864,180948346,180948720	180868295,180933386,180935231,180947936,180948495,180948783	0.564706
testis_male_adult_54_years	chr20	5445827	5445858	5445827	+	High_confidence	32	32	118	4.381577	5.503804	chr20	5445444	5445928	LTR|ERVL-MaLR|MLT1F	-	chr20	5445876	5447418	STRG.341113.1	+	5445876	5447418	0.991525
testis_male_adult_54_years	chr1	246605838	246605859	246605851	+	High_confidence	7	7	24	0.891168	4.142915	chr1	246605408	246605993	LTR|ERV1|MER48	-	chr1	246605872	246608102	AL591623.1|ENST00000417786.1	+	246605872,246607610	246607340,246608102	0.916667
testis_male_adult_54_years	chr15	97295932	97295944	97295932	+	High_confidence	3	3	8	0.297056	2.500000	chr15	97289925	97296313	LINE|L1|L1PA3	-	chr15	97295880	97415824	LINC02253|ENST00000560314.1	+	97295880,97411191,97415789	97296323,97411278,97415824	0.750000
testis_male_adult_54_years	chr4	152150263	152150282	152150263	+	High_confidence	73	76	106	3.935993	5.425063	chr4	152149983	152150322	LTR|ERVL-MaLR|MLT1A	-	chr4	152150271	152152468	STRG.106160.2	+	152150271,152152037	152150364,152152468	0.849057
testis_male_adult_54_years	chr4	118265611	118265640	118265626	+	High_confidence	9	11	26	0.965432	3.823935	chr4	118265367	118266730	LTR|ERV1|LTR12C	+	chr4	118265614	118266667	STRG.101246.1	+	118265614,118266450	118265982,118266667	0.923077
testis_male_adult_54_years	chr18	72209308	72209323	72209322	-	High_confidence	4	4	8	0.297056	2.807355	chr18	72208942	72210364	LTR|ERV1|LTR12C	+	chr18	71937265	72209702	STRG.329997.1	-	71937265,71938240,71944478,72208931	71937406,71938275,71944602,72209702	0.500000
testis_male_adult_54_years	chr2	101567898	101567933	101567898	-	High_confidence	8	9	23	0.854036	4.061482	chr2	101567737	101568306	LTR|ERV1|MER50	-	chr2	101556101	101567920	STRG.42963.1	-	101556101,101565141,101565816,101567813	101556367,101565298,101565937,101567920	0.695652
testis_male_adult_54_years	chr10	52955455	52955527	52955455	-	High_confidence	44	47	121	4.492973	5.916382	chr10	52946907	52955585	LTR|ERV1|HERVS71-int	-	chr10	52946430	52955585	AC073174.2|ENST00000648218.1	-	52946430,52955381	52952970,52955585	0.983471
testis_male_adult_54_years	chr1	36419185	36419303	36419185	-	High_confidence	68	74	353	13.107600	5.883692	chr1	36419141	36419506	LINE|L2|L2b	+	chr1	36417910	36419293	OSCP1|ENST00000471369.1	-	36417910,36418990	36418255,36419293	0.762040
testis_male_adult_54_years	chr22	18149845	18149869	18149868	+	High_confidence	6	6	17	0.631244	3.750000	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.823529
testis_male_adult_54_years	chr7	158859000	158859019	158859018	+	RAMPAGE_only	3	3	11	0.408452	3.321928	chr7	158858991	158859159	SINE|Alu|AluJb	-	chr7	158856577	158946192	WDR60|NM_018051.4	+	158856577,158869854,158871141,158876608,158879683,158884563,158887020,158891264,158901738,158902375,158905988,158911549,158912984,158914232,158918739,158922376,158923570,158926186,158926401,158926991,158930454,158934128,158934417,158941924,158945580	158856750,158869908,158871562,158876691,158879989,158884619,158887075,158891333,158901816,158902595,158906091,158911679,158913096,158914321,158918869,158922549,158923733,158926300,158926463,158927043,158930515,158934228,158934549,158942148,158946192	0.818182
testis_male_adult_54_years	chr9	98877317	98877347	98877317	-	RAMPAGE_only	3	3	13	0.482716	3.251629	chr9	98877295	98877786	LINE|CR1|L3	-	chr9	98869240	98872263	AL136084.2|ENST00000590999.5	-	98869240,98870432,98870890,98872188	98869490,98870771,98870984,98872263	0.538462
testis_male_adult_54_years	chr8	57219376	57219379	57219376	+	High_confidence	6	6	12	0.445584	3.277613	chr8	57219003	57219613	LTR|ERV1|MER50-int	-	chr8	57219378	57220738	LINC01606|ENST00000517611.1	+	57219378,57220110,57220588	57219623,57220295,57220738	0.750000
testis_male_adult_54_years	chr5	115296157	115296166	115296165	-	High_confidence	7	9	12	0.445584	3.277613	chr5	115296013	115296236	SINE|MIR|MIRb	-	chr5	115267354	115296065	CCDC112|ENST00000512261.5	-	115267354,115268881,115269702,115271212,115275215,115275993,115276964,115279646,115280351,115284786,115295909	115267918,115269000,115269798,115271626,115275606,115276069,115277054,115279768,115280480,115284908,115296065	0.916667
testis_male_adult_54_years	chr6	155364063	155364064	155364063	+	High_confidence	142	143	155	5.755462	4.106688	chr6	155362874	155364401	LTR|ERV1|LTR12C	+	chr6	155364081	155365129	STRG.154727.1	+	155364081	155365129	0.954839
testis_male_adult_54_years	chr13	89163277	89163336	89163277	-	High_confidence	8	9	28	1.039696	4.107011	chr13	89163138	89163445	DNA|hAT-Charlie|MER1B	+	chr13	89141934	89163285	STRG.273674.1	-	89141934,89159465,89162739,89163105	89142131,89159648,89162881,89163285	0.928571
testis_male_adult_54_years	chr16	9183755	9183775	9183755	-	High_confidence	105	105	156	5.792594	5.591353	chr16	9183367	9184727	LTR|ERV1|LTR12C	-	chr16	9182164	9183750	STRG.303259.1	-	9182164	9183750	0.987179
testis_male_adult_54_years	chr1	155991310	155991334	155991333	+	High_confidence	3	3	12	0.445584	3.418296	chr1	155991306	155991391	SINE|MIR|MIRc	-	chr1	155991389	156001787	AL355388.1|ENST00000415726.1	+	155991389,156001507	155991510,156001787	0.500000
testis_male_adult_54_years	chr1	239730464	239730465	239730464	-	High_confidence	814	822	1103	40.956608	7.031327	chr1	239730338	239730702	LINE|L2|L2c	-	chr1	239707342	239730465	CHRM3-AS2|ENST00000628573.2	-	239707342,239714176,239720138,239727653,239730400	239707760,239714264,239720178,239727808,239730465	0.559383
testis_male_adult_54_years	chr16	75248150	75248151	75248150	-	High_confidence	5	5	7	0.259924	2.521641	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	1.000000
testis_male_adult_54_years	chr10	68906309	68906328	68906309	+	RAMPAGE_only	3	3	9	0.334188	2.750000	chr10	68906269	68906366	SINE|MIR|MIRb	+	chr10	68901316	68913230	DDX50|ENST00000471475.1	+	68901316,68906225,68906710,68910306,68911067,68913161	68901471,68906337,68907007,68910382,68911246,68913230	0.666667
testis_male_adult_54_years	chr5	134613081	134613120	134613096	-	High_confidence	98	100	517	19.197250	5.970733	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.835590
testis_male_adult_54_years	chr1	235264588	235264602	235264588	-	RAMPAGE_only	13	13	27	1.002564	4.440636	chr1	235264454	235264642	SINE|MIR|MIR	+	chr1	235166894	235327487	ARID4B|NM_001206794.1	-	235166894,235172617,235175183,235177799,235181584,235194012,235196030,235213768,235219792,235220301,235221564,235223165,235224702,235229230,235231112,235234412,235240312,235246419,235252729,235255659,235257159,235260641,235326913,235327159	235168652,235172764,235175399,235177913,235182793,235194211,235196115,235214026,235219968,235220545,235221662,235223260,235224775,235229385,235231189,235234492,235240451,235246511,235252809,235255750,235257225,235260752,235326968,235327487	0.851852
testis_male_adult_54_years	chr7	111393007	111393036	111393035	-	High_confidence	3	3	6	0.222792	2.584963	chr7	111392522	111393282	LTR|ERVL|MER21C	-	chr7	110663425	111392915	IMMP2L|ENST00000450877.5	-	110663425,110886592,110963499,111391837,111392801	110663721,110886695,110963565,111392019,111392915	0.666667
testis_male_adult_54_years	chr14	51926659	51926681	51926676	-	RAMPAGE_only	20	20	55	2.042261	4.631520	chr14	51926562	51926893	LTR|ERV1|MER61A	+	chr14	51916144	51918571	AL358333.2|ENST00000556834.1	-	51916144,51917333,51918548	51916507,51917476,51918571	0.818182
testis_male_adult_54_years	chr10	28796164	28796196	28796195	+	High_confidence	2	3	9	0.334188	3.000000	chr10	28795966	28796239	LTR|ERVL-MaLR|MLT1J1	-	chr10	28795619	28798597	STRG.215859.1	+	28795619	28798597	0.666667
testis_male_adult_54_years	chr2	9554953	9554971	9554965	-	High_confidence	13	19	50	1.856601	5.188758	chr2	9554869	9555063	DNA|hAT-Tip100?|MamRep1879	-	chr2	9488636	9554729	ADAM17|ENST00000648548.1	-	9488636,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152,9551474,9554708	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526264,9527954,9535922,9536828,9543285,9551757,9554729	0.660000
testis_male_adult_54_years	chr5	151133278	151133303	151133302	-	High_confidence	9	9	28	1.039696	4.469670	chr5	151133251	151133323	LINE|L2|L2c	+	chr5	151126444	151133323	ANXA6|ENST00000517707.5	-	151126444,151128180,151129406,151131230,151132475,151133093	151126480,151128239,151129529,151131289,151132571,151133323	0.642857
testis_male_adult_54_years	chr21	40728042	40728084	40728058	-	High_confidence	30	48	138	5.124218	6.421907	chr21	40727476	40728316	LINE|L2|L2a	+	chr21	40188991	40728078	STRG.352014.1	-	40188991,40276096,40296054,40312080,40338100,40339118,40347669,40353464,40369098,40692809,40708453,40728004	40189238,40276270,40296174,40312359,40338376,40339415,40347945,40353743,40369245,40692956,40708771,40728078	0.789855
testis_male_adult_54_years	chr20	63926626	63926634	63926626	+	RAMPAGE_only	5	5	9	0.334188	2.750000	chr20	63926484	63926905	LTR|ERVL|MLT2B1	-	chr20	63919867	63936031	STRG.347973.8	+	63919867,63925872,63928334,63929311,63930850,63931464	63925711,63927322,63928452,63929525,63931022,63936031	0.888889
testis_male_adult_54_years	chr3	137714087	137714123	137714090	-	High_confidence	118	124	401	14.889936	6.033348	chr3	137713682	137715059	LTR|ERV1|LTR12C	-	chr3	137474712	137714102	STRG.78332.1	-	137474712,137477156,137626906,137691918,137710792,137713713	137474914,137477341,137627060,137691966,137710885,137714102	0.895262
testis_male_adult_54_years	chr2	110307096	110307117	110307116	+	High_confidence	4	5	10	0.371320	2.947703	chr2	110306676	110308064	Retroposon|SVA|SVA_B	+	chr2	110306744	110308016	STRG.43922.1	+	110306744	110308016	0.800000
testis_male_adult_54_years	chr17	14834604	14834605	14834604	+	High_confidence	76	76	88	3.267617	5.888304	chr17	14834325	14834951	LTR|ERV1|LTR12D	+	chr17	14834637	14844151	STRG.313500.3	+	14834637,14837940	14834942,14844151	0.761364
testis_male_adult_54_years	chr1	155378293	155378338	155378332	-	RAMPAGE_only	5	5	12	0.445584	3.418296	chr1	155378311	155378369	LINE|CR1|L3	+	chr1	155370146	155370868	ASH1L|ENST00000477427.1	-	155370146,155370776	155370650,155370868	0.500000
testis_male_adult_54_years	chr5	160412462	160412478	160412462	-	RAMPAGE_only	5	6	12	0.445584	3.584963	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160406348	160408421	SLU7|ENST00000520841.1	-	160406348,160407475,160407745,160407970,160408328	160406629,160407615,160407813,160408068,160408421	0.666667
testis_male_adult_54_years	chr2	142748894	142748931	142748930	+	RAMPAGE_only	16	16	53	1.967997	5.126519	chr2	142748611	142749226	LTR|ERV1|LTR9D	-	chr2	142877497	143055832	KYNU|ENST00000264170.8	+	142877497,142885348,142918608,142927658,142954809,142956202,142957640,142960623,142985083,142985947,143029626,143033235,143040427,143042046	142877736,142885536,142918729,142927741,142954871,142956274,142957715,142960770,142985182,142986021,143029679,143033321,143040658,143055832	0.566038
testis_male_adult_54_years	chr2	224339185	224339197	224339194	-	RAMPAGE_only	14	18	30	1.113960	4.112821	chr2	224339135	224339222	SINE|MIR|MIR3	+	chr2	224296414	224323606	STRG.58546.1	-	224296414,224323443	224296551,224323606	0.633333
testis_male_adult_54_years	chr2	156255009	156255029	156255009	+	High_confidence	5	5	15	0.556980	3.773557	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156255005	156255492	STRG.49231.1	+	156255005	156255492	0.533333
testis_male_adult_54_years	chr3	132285531	132285558	132285531	-	High_confidence	65	79	326	12.105036	7.429126	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	132028924	132285410	STRG.77957.7	-	132028924,132039524,132284042,132285239	132037710,132040321,132284170,132285410	0.745399
testis_male_adult_54_years	chr11	108116704	108116716	108116704	+	RAMPAGE_only	172	179	404	15.001332	6.059971	chr11	108116571	108116980	LTR|ERVL-MaLR|MLT1C	+	chr11	108121804	108131954	ACAT1|ENST00000526119.1	+	108121804,108128642,108131906	108121926,108129201,108131954	0.650990
testis_male_adult_54_years	chr14	66505728	66505742	66505728	-	RAMPAGE_only	2	2	6	0.222792	2.584963	chr14	66505609	66505940	DNA|hAT-Charlie|MER1B	+	chr14	66495695	66508028	STRG.284485.3	-	66495695,66505284	66496342,66508028	1.000000
testis_male_adult_54_years	chr19	38528653	38528680	38528667	+	High_confidence	2	4	10	0.371320	3.169925	chr19	38528658	38528699	LINE|RTE-BovB|MamRTE1	-	chr19	38528089	38536062	RYR1|ENST00000601514.5	+	38528089,38528305,38528598,38528950,38532489,38532670,38534719,38535140,38535315,38535996	38528194,38528418,38528695,38529057,38532541,38532736,38534819,38535220,38535392,38536062	0.900000
testis_male_adult_54_years	chr9	89479889	89479890	89479889	-	High_confidence	463	466	472	17.526309	5.517327	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89362238	89479890	SEMA4D|ENST00000537934.5	-	89362238,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89418362,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89418437,89455953,89479890	0.930085
testis_male_adult_54_years	chr4	119804512	119804521	119804520	-	High_confidence	16	16	36	1.336752	4.760067	chr4	119804465	119804582	LINE|L1|HAL1	-	chr4	119799088	119804515	LINC01365|ENST00000503266.5	-	119799088,119800636,119801351,119802723,119804451	119799236,119800762,119801394,119802892,119804515	0.555556
testis_male_adult_54_years	chr3	99598066	99598102	99598084	+	High_confidence	7	10	39	1.448148	4.938998	chr3	99598015	99598413	LTR|ERVL|LTR16	-	chr3	99598063	99623820	AC107029.2|ENST00000462011.1	+	99598063,99621951	99598499,99623820	0.794872
testis_male_adult_54_years	chr16	83776848	83776865	83776848	+	RAMPAGE_only	4	4	15	0.556980	3.640224	chr16	83776799	83776962	LINE|L2|L2	+	chr16	82626969	83795173	CDH13|ENST00000539548.6	+	82626969,82858361,83125384,83217344,83344861,83486476,83602453,83670789,83678207,83748107,83779967,83783253,83795022	82627137,82858473,83125501,83217497,83345006,83486655,83602594,83670972,83678461,83748250,83780201,83783472,83795173	0.600000
testis_male_adult_54_years	chr8	87971209	87971238	87971209	-	High_confidence	6	8	16	0.594112	3.640224	chr8	87970972	87972345	LTR|ERV1|LTR12C	+	chr8	87964161	87971634	STRG.188386.1	-	87964161,87970930	87964284,87971634	0.875000
testis_male_adult_54_years	chr3	10008581	10008606	10008581	-	High_confidence	2	2	10	0.371320	2.947703	chr3	10008574	10008675	SINE|MIR|MIRb	-	chr3	10007343	10008480	AC022007.1|ENST00000621000.1	-	10007343,10008403	10007623,10008480	0.800000
testis_male_adult_54_years	chr4	27673377	27673378	27673377	-	High_confidence	6	6	8	0.297056	2.500000	chr4	27673324	27673425	LINE|CR1|Plat_L3	-	chr4	27651794	27673358	STRG.91996.1	-	27651794,27655273,27656470,27656930,27673131	27651851,27655328,27656575,27656992,27673358	0.875000
testis_male_adult_54_years	chr13	81226985	81226986	81226985	-	High_confidence	88	89	118	4.381577	5.834817	chr13	81226671	81227228	LTR|ERV1|LTR12_	-	chr13	81225864	81226983	LINC00564|ENST00000567258.1	-	81225864	81226983	0.796610
testis_male_adult_54_years	chr5	81178839	81178840	81178839	+	RAMPAGE_only	15	15	20	0.742640	4.142664	chr5	81178744	81179036	SINE|Alu|AluY	-	chr5	81067323	81230166	STRG.120412.1	+	81067323,81068031,81070491,81073198,81080120,81080595,81085801,81086834,81092800,81094295,81094855,81108995,81112609,81113537,81123641,81127073,81180174,81183180,81201329,81206844,81207245,81208353,81212365,81215875,81217355,81219709,81225677	81067366,81068179,81070581,81073452,81080200,81080789,81085911,81086953,81092961,81094362,81094992,81109078,81112858,81113920,81123767,81127163,81180281,81183319,81201442,81206905,81207349,81208438,81212563,81215955,81217473,81219778,81230166	0.700000
testis_male_adult_54_years	chr2	53259280	53259315	53259280	-	High_confidence	22	22	51	1.893733	5.228758	chr2	53258756	53260053	LTR|ERV1|LTR12D	-	chr2	53258712	53259703	STRG.36313.1	-	53258712	53259703	0.901961
testis_male_adult_54_years	chr17	39917467	39917483	39917473	-	High_confidence	3	3	13	0.482716	3.188722	chr17	39917413	39917823	LTR|ERV1|LTR7B	+	chr17	39904594	39917540	GSDMB|NM_018530.2	-	39904594,39905425,39905846,39906110,39908957,39909755,39912325,39917081	39904964,39905496,39905985,39906271,39909042,39909924,39912497,39917540	0.923077
testis_male_adult_54_years	chr6	13270211	13270214	13270211	+	RAMPAGE_only	12	12	21	0.779772	3.503702	chr6	13269853	13270617	LTR|ERVL|MER21C	-	chr6	13272211	13286197	PHACTR1|ENST00000489548.1	+	13272211,13272859,13278267,13283421,13286145	13272468,13272915,13278329,13283562,13286197	0.666667
testis_male_adult_54_years	chr19	209244	209254	209244	-	RAMPAGE_only	3	3	7	0.259924	2.584963	chr19	208823	209255	DNA|hAT-Charlie|MER1A	-	chr19	208187	212219	LINC01002|ENST00000633151.1	-	208187,211761,212017	208391,211885,212219	0.571429
testis_male_adult_54_years	chr2	163121645	163121700	163121682	+	High_confidence	27	28	112	4.158785	5.797735	chr2	163121522	163122034	LINE|L1|L1ME2	-	chr2	163121623	163125029	STRG.50140.1	+	163121623,163124118	163121927,163125029	1.000000
testis_male_adult_54_years	chr13	30634193	30634238	30634237	+	High_confidence	70	94	355	13.181864	5.155971	chr13	30633820	30634460	DNA|TcMar-Tigger|Tigger7	-	chr13	30634178	30660770	USPL1|NM_001321534.1	+	30634178,30637743,30642627,30646931,30653147,30657473	30634414,30637857,30642757,30647057,30653305,30660770	0.949296
testis_male_adult_54_years	chr7	19353535	19353536	19353535	+	High_confidence	14	14	20	0.742640	3.932138	chr7	19353183	19353943	DNA|TcMar-Tigger|Tigger7	+	chr7	19353533	19578606	AC007091.1|ENST00000412563.1	+	19353533,19354739,19403700,19405331,19576286,19578528	19353641,19354885,19403763,19405370,19576418,19578606	0.600000
testis_male_adult_54_years	chr4	42486249	42486273	42486272	+	RAMPAGE_only	3	3	9	0.334188	2.947703	chr4	42485972	42486540	LTR|ERV1|LTR10C	-	chr4	42498243	42499555	STRG.93519.1	+	42498243,42499103	42498300,42499555	0.666667
testis_male_adult_54_years	chr3	7342656	7342662	7342656	+	RAMPAGE_only	5	5	10	0.371320	3.321928	chr3	7342584	7342771	DNA|hAT-Charlie|MER5A	-	chr3	7298682	7686427	GRM7|ENST00000402647.6	+	7298682,7306497,7415022,7452606,7461582,7578421,7680048,7686356	7298825,7306652,7415163,7452807,7461722,7579357,7680295,7686427	0.900000
testis_male_adult_54_years	chr1	148498710	148498739	148498738	-	High_confidence	14	14	42	1.559544	5.016089	chr1	148498566	148498914	LTR|ERVL-MaLR|MLT1A0	-	chr1	148434773	148498992	STRG.16409.2	-	148434773,148436443,148463387,148498640	148435354,148436564,148463542,148498992	0.571429
testis_male_adult_54_years	chr7	29905331	29905332	29905331	+	RAMPAGE_only	4	4	7	0.259924	2.521641	chr7	29905354	29907475	LINE|L1|L1MB3	+	chr7	29806485	29906175	WIPF3|ENST00000409123.5	+	29806485,29834667,29875829,29879008,29883849,29888067,29889305,29904285	29806678,29834814,29875962,29879140,29884593,29888217,29889407,29906175	0.714286
testis_male_adult_54_years	chr16	72627719	72627740	72627719	-	RAMPAGE_only	7	8	14	0.519848	3.664498	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.571429
testis_male_adult_54_years	chr4	152412488	152412530	152412488	-	High_confidence	11	11	49	1.819469	5.095176	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.979592
testis_male_adult_54_years	chr17	68045453	68045517	68045516	+	High_confidence	6	6	26	0.965432	3.719080	chr17	68045393	68045538	DNA|hAT-Charlie|MER5B	-	chr17	68045467	68046629	KPNA2|ENST00000582898.1	+	68045467,68045771,68046503	68045585,68045921,68046629	0.961538
testis_male_adult_54_years	chr10	46872829	46872837	46872829	-	High_confidence	8	8	17	0.631244	4.000000	chr10	46872799	46873020	SINE|MIR|MIR	-	chr10	46870470	46872822	STRG.217847.1	-	46870470,46872744	46872213,46872822	0.705882
testis_male_adult_54_years	chr9	99961024	99961025	99961024	+	RAMPAGE_only	7	7	8	0.297056	2.521641	chr9	99960904	99961367	LINE|L2|L2a	-	chr9	99906677	99963104	STRG.207562.7	+	99906677,99915177,99928777,99951059,99959483	99906706,99915362,99928843,99951285,99963104	0.875000
testis_male_adult_54_years	chr8	80673321	80673322	80673321	-	RAMPAGE_only	11	11	16	0.594112	3.875000	chr8	80672923	80673289	DNA|hAT-Charlie|Charlie4a	-	chr8	80628450	80874781	ZNF704|NM_001033723.2	-	80628450,80643034,80659584,80664814,80670502,80687225,80693003,80821373,80874570	80641477,80643129,80659689,80665082,80670603,80687458,80693107,80821615,80874781	0.812500
testis_male_adult_54_years	chr3	198185382	198185388	198185387	+	RAMPAGE_only	3	3	8	0.297056	2.500000	chr3	198185270	198185698	LTR|ERVL-MaLR|MLT1D	-	chr3	198180754	198190365	FAM157A|ENST00000615155.2	+	198180754,198186448,198188671,198189836,198190288	198180864,198186514,198188730,198189929,198190365	1.000000
testis_male_adult_54_years	chr16	77196066	77196100	77196092	+	RAMPAGE_only	5	6	15	0.556980	3.093069	chr16	77196084	77196186	LINE|L2|L2a	+	chr16	77193967	77199636	MON1B|ENST00000566455.1	+	77193967,77195534,77198107	77195154,77195682,77199636	0.866667
testis_male_adult_54_years	chr10	30922243	30922264	30922252	-	RAMPAGE_only	5	5	17	0.631244	3.852169	chr10	30921724	30922283	DNA|hAT-Charlie|Charlie2b	+	chr10	30827886	30904461	STRG.216250.8	-	30827886,30834120,30835566,30844852,30848530,30876997,30901613	30828865,30834212,30835640,30845573,30850367,30877065,30904461	0.647059
testis_male_adult_54_years	chr6	14661295	14661314	14661307	+	High_confidence	122	124	296	10.991075	6.942298	chr6	14661131	14661517	LINE|L2|L2c	-	chr6	14661318	14665110	STRG.136656.1	+	14661318,14662208,14665045	14661850,14662321,14665110	0.878378
testis_male_adult_54_years	chr11	66715046	66715057	66715056	-	RAMPAGE_only	4	4	8	0.297056	2.807355	chr11	66714958	66715210	DNA|hAT-Charlie|Charlie10	-	chr11	66685251	66721240	SPTBN2|ENST00000529997.5	-	66685251,66686993,66687426,66687867,66688003,66688168,66688652,66689095,66689804,66690038,66691283,66692535,66692969,66693185,66693771,66694138,66696276,66698638,66698991,66699405,66700525,66701583,66704597,66705683,66707515,66708140,66708901,66710581,66710916,66713630,66714090,66714315,66715221,66715829,66721083	66686440,66687167,66687647,66687918,66688079,66688311,66688849,66689180,66689943,66690283,66691658,66692740,66693100,66693446,66693861,66694363,66696540,66698785,66699082,66699608,66701282,66701721,66705468,66705837,66707818,66708299,66709019,66710769,66711029,66713746,66714171,66714407,66715395,66715981,66721240	0.750000
testis_male_adult_54_years	chr13	25512981	25513060	25513035	+	RAMPAGE_only	6	8	52	1.930865	5.061607	chr13	25511888	25514008	Retroposon|SVA|SVA_D	-	chr13	25529930	25582854	STRG.265255.3	+	25529930,25530561,25532271,25533272,25537987,25540318,25541918,25543290,25551337,25553792,25554990,25558972,25559720,25563955,25570766,25571609,25574807,25577068,25578814,25579807,25581818,25582377	25530098,25530660,25532317,25533313,25538061,25540388,25542046,25543402,25551503,25553920,25555068,25559061,25559765,25564031,25570872,25571692,25574857,25577138,25578899,25579947,25581957,25582854	0.923077
testis_male_adult_54_years	chr16	55670832	55670851	55670840	+	High_confidence	5	8	30	1.113960	4.651084	chr16	55670412	55670894	LTR|ERVL-MaLR|MLT1K	-	chr16	55671044	55671245	STRG.307044.1	+	55671044	55671245	0.500000
testis_male_adult_54_years	chr17	47324968	47325001	47325000	-	RAMPAGE_only	2	2	11	0.408452	3.121928	chr17	47324758	47325030	LINE|L2|L2a	+	chr17	47303442	47323901	THCAT158|NR_110880.1	-	47303442,47318471,47323688	47303782,47318620,47323901	0.545455
testis_male_adult_54_years	chr2	159382561	159382573	159382572	-	RAMPAGE_only	3	3	12	0.445584	3.459432	chr2	159382314	159382523	SINE|MIR|MIRb	-	chr2	159318978	159616569	BAZ2B|ENST00000392782.5	-	159318978,159324810,159325652,159332539,159336941,159337566,159347485,159348677,159349006,159349707,159373044,159374690,159382558,159383605,159385154,159386352,159389344,159395768,159397344,159398828,159400598,159404848,159405021,159412334,159428310,159429199,159430862,159432756,159438302,159439008,159446781,159448241,159453612,159478574,159555822,159616241	159320418,159324954,159325918,159332686,159337077,159337772,159347646,159348833,159349280,159350357,159373189,159374753,159382802,159383680,159385369,159386607,159389485,159395834,159397389,159398894,159400664,159404910,159405114,159412545,159428419,159429260,159431156,159433363,159438695,159439212,159446975,159448403,159453801,159478721,159555865,159616569	0.916667
testis_male_adult_54_years	chr2	2462060	2462124	2462091	-	High_confidence	6	6	36	1.336752	4.593429	chr2	2461807	2462108	LTR|ERVL|ERVL-E-int	+	chr2	2460936	2461662	STRG.29632.1	-	2460936,2461173,2461547	2461065,2461410,2461662	0.805556
testis_male_adult_54_years	chr18	68716591	68716592	68716591	+	RAMPAGE_only	6	6	6	0.222792	2.584963	chr18	68716540	68716652	DNA|hAT-Charlie|Charlie5	+	chr18	68715274	68874709	CCDC102B|ENST00000584775.5	+	68715274,68716527,68734733,68836748,68838705,68846312,68874668	68715361,68716594,68734766,68837369,68838926,68846421,68874709	1.000000
testis_male_adult_54_years	chr14	19381242	19381254	19381253	-	RAMPAGE_only	4	4	8	0.297056	2.807355	chr14	19380779	19381252	LINE|L1|L1P4	-	chr14	19362467	19384587	STRG.277180.23	-	19362467	19384587	0.750000
testis_male_adult_54_years	chr7	100367365	100367467	100367382	+	RAMPAGE_only	14	14	66	2.450713	4.570516	chr7	100367336	100367673	LTR|ERVL-MaLR|MLT1J2	+	chr7	100358002	100367831	PILRB|NM_178238.3	+	100358002,100358689,100359336,100367348	100358366,100359079,100359537,100367831	0.969697
testis_male_adult_54_years	chr7	40897983	40897984	40897983	+	High_confidence	209	210	276	10.248435	5.486711	chr7	40897735	40898432	LTR|ERV1|LTR12D	+	chr7	40897772	40898445	STRG.163130.1	+	40897772	40898445	0.974638
testis_male_adult_54_years	chr4	46909231	46909245	46909244	-	High_confidence	67	69	145	5.384142	6.331867	chr4	46909121	46909457	LTR|ERVL|LTR79	-	chr4	46734826	46909235	COX7B2|NM_130902.2	-	46734826,46844959,46909159	46735241,46845014,46909235	0.696552
testis_male_adult_54_years	chr7	111344333	111344362	111344356	-	RAMPAGE_only	4	4	12	0.445584	3.251629	chr7	111343858	111344474	LINE|L2|L2a	+	chr7	111325305	111402114	STRG.171087.7	-	111325305	111402114	1.000000
testis_male_adult_54_years	chr6	75891300	75891305	75891304	+	RAMPAGE_only	10	11	21	0.779772	4.297079	chr6	75891350	75891661	SINE|Alu|AluY	+	chr6	75817523	75915177	MYO6|ENST00000627432.2	+	75817523,75822781,75828539,75830415,75832841,75835900,75840584,75841213,75844896,75848350,75855138,75857096,75858901,75861022,75862595,75866525,75866931,75870646,75873206,75879819,75880042,75881688,75886003,75886843,75890056,75891227,75892529,75894813,75895230,75898372,75907604,75908495,75911671,75914062,75914812	75817664,75822851,75828613,75830545,75832947,75835956,75840682,75841378,75844977,75848531,75855283,75857254,75858993,75861095,75862723,75866621,75867105,75870685,75873300,75879950,75880120,75881818,75886094,75886994,75890265,75891306,75892690,75894840,75895260,75898411,75907708,75908627,75911698,75914281,75915177	0.857143
testis_male_adult_54_years	chr1	10430973	10430994	10430993	+	High_confidence	13	13	28	1.039696	4.469670	chr1	10431042	10431162	SINE|MIR|MIRb	+	chr1	10431122	10442502	CENPS|ENST00000462462.1	+	10431122,10440346,10442264	10431401,10440413,10442502	0.750000
testis_male_adult_54_years	chr9	94590735	94590736	94590735	-	High_confidence	121	123	124	4.604369	4.830489	chr9	94590436	94591627	LTR|ERV1|LTR12E	-	chr9	94558778	94590731	STRG.206340.1	-	94558778,94563341,94567269,94571461,94584576,94587306,94590140	94559132,94563461,94567407,94571602,94584669,94587469,94590731	0.967742
testis_male_adult_54_years	chr13	50397360	50397371	50397360	+	High_confidence	2	2	11	0.408452	3.121928	chr13	50396411	50397833	LTR|ERV1|LTR12C	+	chr13	50397418	50654079	DLEU1|ENST00000647700.1	+	50397418,50415088,50425577,50433412,50648592,50653710	50397896,50415202,50425729,50433550,50648643,50654079	0.909091
testis_male_adult_54_years	chr1	77169312	77169325	77169312	-	RAMPAGE_only	9	10	18	0.668376	3.057476	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77150970	77219423	STRG.10378.4	-	77150970,77161294,77163845,77166718,77169259,77206639,77210435,77219309	77154621,77161711,77163942,77166830,77169395,77206731,77210489,77219423	0.944444
testis_male_adult_54_years	chr12	129070303	129070333	129070313	+	High_confidence	8	8	24	0.891168	4.186704	chr12	129070134	129070650	DNA|hAT-Charlie|Charlie8	-	chr12	129070310	129071608	STRG.263409.2	+	129070310,129071267	129070621,129071608	0.708333
testis_male_adult_54_years	chr21	17901242	17901243	17901242	+	High_confidence	4	6	6	0.222792	2.584963	chr21	17900086	17901723	LINE|L1|L1PB1	-	chr21	17901262	18267373	CHODL|ENST00000400128.5	+	17901262,17917219,18256508,18256969,18260199,18262790,18265953	17901424,17917400,18256818,18257127,18260286,18262893,18267373	0.666667
testis_male_adult_54_years	chr6	104569506	104569543	104569515	-	High_confidence	4	4	21	0.779772	4.321928	chr6	104569215	104569478	LINE|L1|L1MC5	-	chr6	104568566	104569822	STRG.148556.1	-	104568566	104569822	0.809524
testis_male_adult_54_years	chr12	126094134	126094152	126094142	+	High_confidence	19	20	50	1.856601	4.971653	chr12	126094078	126094196	LTR|ERVL-MaLR|MLT1J2	-	chr12	126094116	126108943	STRG.263049.1	+	126094116,126096239,126100688,126107043	126094287,126096366,126100805,126108943	0.740000
testis_male_adult_54_years	chr9	121080354	121080355	121080354	+	RAMPAGE_only	14	14	17	0.631244	3.577820	chr9	121080297	121080460	SINE|Alu|FAM	-	chr9	121075011	121177608	CNTRL|ENST00000373855.5	+	121075011,121080305,121088295,121090274,121094887,121096421,121098385,121107801,121112458,121113501,121115090,121118345,121123930,121125715,121135805,121138544,121140640,121141380,121142090,121143902,121144842,121145243,121146107,121148671,121150169,121152484,121154720,121157469,121157739,121157982,121158854,121160142,121161855,121162053,121164942,121166106,121167488,121168095,121169610,121171407,121173242,121173674,121175017,121177162	121075067,121080478,121088543,121090405,121095018,121096563,121098572,121107995,121112578,121113724,121115200,121118540,121124084,121125936,121135982,121138679,121140786,121141588,121142270,121144082,121144959,121145385,121146256,121148861,121150483,121152693,121154913,121157600,121157880,121158109,121159019,121160302,121161971,121162271,121165100,121166180,121167677,121168321,121169816,121171548,121173509,121173737,121175224,121177608	0.882353
testis_male_adult_54_years	chr2	106585306	106585307	106585306	+	High_confidence	158	159	189	7.017950	6.305382	chr2	106584244	106585726	LTR|ERV1|LTR12C	+	chr2	106585312	106660963	STRG.43230.1	+	106585312,106660539	106586013,106660963	0.925926
testis_male_adult_54_years	chr12	49371242	49371243	49371242	+	RAMPAGE_only	7	7	7	0.259924	2.807355	chr12	49371035	49371545	LINE|L1|L1MB3	-	chr12	49367517	49484663	SPATS2|ENST00000548777.5	+	49367517,49406472,49460769,49484589	49367587,49406565,49461037,49484663	0.571429
testis_male_adult_54_years	chr16	82575443	82575508	82575443	-	High_confidence	6	6	38	1.411016	4.701746	chr16	82575303	82575476	DNA|hAT-Charlie|MER3	-	chr16	82573573	82575484	STRG.310612.1	-	82573573,82574789,82575148	82573812,82575031,82575484	0.789474
testis_male_adult_54_years	chr14	27845646	27845652	27845651	-	High_confidence	4	4	11	0.408452	3.121928	chr14	27845185	27846580	LTR|ERV1|LTR12C	+	chr14	27844660	27845833	STRG.278217.2	-	27844660	27845833	0.818182
testis_male_adult_54_years	chr4	118919764	118919765	118919764	+	RAMPAGE_only	21	21	23	0.854036	3.939471	chr4	118919460	118920420	LINE|L2|L2c	-	chr4	118916033	118952335	STRG.101380.1	+	118916033,118928055	118927994,118952335	0.913043
thoracic_aorta_male_adult_37_years	chr2	112020600	112020667	112020600	+	RAMPAGE_only	2	2	15	0.557024	2.692381	chr2	112020531	112020894	LTR|Gypsy|MamGypLTR3a	-	chr2	111997369	112029000	STRG.17886.4	+	111997369,112001200,112003091,112008382,112022257,112028350	111997476,112001286,112003984,112021581,112022394,112029000	0.933333
thoracic_aorta_male_adult_37_years	chr1	52913965	52913999	52913994	-	RAMPAGE_only	3	3	9	0.334214	2.947703	chr1	52913984	52914299	LINE|L2|L2b	-	chr1	52913419	52921785	ECHDC2|ENST00000542552.1	-	52913419,52917543,52921552	52914095,52917615,52921785	0.777778
thoracic_aorta_male_adult_37_years	chr19	49539124	49539158	49539157	+	RAMPAGE_only	5	5	31	1.151183	4.148394	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49528543	49543633	STRG.126701.10	+	49528543,49534192,49537032,49539118,49542552	49528714,49534301,49537205,49539179,49543633	0.903226
thoracic_aorta_male_adult_37_years	chr5	65988667	65988674	65988673	+	High_confidence	4	5	10	0.371349	3.169925	chr5	65988722	65989005	SINE|Alu|AluJb	+	chr5	65988632	66078936	ERBIN|ENST00000508515.1	+	65988632,65992709,65994746,66012048,66013548,66014668,66021321,66023289,66024305,66025479,66025847,66026301,66028273,66038382,66043076,66044136,66046352,66048666,66050782,66053405,66076315,66076874,66078422	65988682,65992907,65994864,66012127,66013638,66014725,66021385,66023364,66024450,66025552,66025977,66026417,66028343,66038482,66043198,66044310,66046538,66048781,66050966,66054951,66076408,66076949,66078936	0.900000
thoracic_aorta_male_adult_37_years	chr11	62600186	62600250	62600186	-	High_confidence	4	5	27	1.002643	4.053661	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.629630
thoracic_aorta_male_adult_37_years	chr22	17101890	17101923	17101922	+	RAMPAGE_only	2	2	8	0.297080	2.521641	chr22	17101933	17101968	LINE|Penelope|Penelope1_Vert	+	chr22	17084958	17115694	IL17RA|ENST00000612619.1	+	17084958,17097061,17097796,17098774,17100354,17101995,17102138,17103493,17104725,17105590,17107726,17108306	17085229,17097086,17097943,17098887,17100481,17102043,17102302,17103577,17104810,17105602,17107768,17115694	0.500000
thoracic_aorta_male_adult_37_years	chr4	4269609	4269614	4269613	-	High_confidence	11	14	28	1.039778	3.203987	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.928571
thoracic_aorta_male_adult_37_years	chr12	123390725	123390761	123390725	+	High_confidence	22	24	71	2.636581	5.260741	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.915493
thoracic_aorta_male_adult_37_years	chr3	179397857	179397879	179397857	-	RAMPAGE_only	3	3	13	0.482754	3.188722	chr3	179397743	179398028	SINE|Alu|AluSg7	-	chr3	179396088	179451476	STRG.32784.1	-	179396088,179405189,179413411,179413714,179414884,179416492,179419398,179420888,179424111,179426143,179451345	179401319,179405406,179413613,179413781,179415047,179416556,179419505,179420927,179424284,179426242,179451476	0.923077
thoracic_aorta_male_adult_37_years	chr8	118065929	118066298	118065980	-	RAMPAGE_only	24	24	255	9.469410	4.310139	chr8	118065854	118066003	SINE|MIR|MIR3	+	chr8	117997316	118079630	STRG.69914.7	-	117997316,118032172	118032099,118079630	0.984314
thoracic_aorta_male_adult_37_years	chr2	217815084	217815096	217815095	-	RAMPAGE_only	5	5	14	0.519889	3.521641	chr2	217815022	217815485	LTR|ERVL-MaLR|MLT1C	+	chr2	217813708	217885810	STRG.22865.13	-	217813708,217817689,217821739,217831454,217835090,217836014,217847509,217880897,217882345,217885034,217885743	217814998,217818759,217821938,217831547,217835166,217836211,217849087,217881014,217882411,217885164,217885810	1.000000
thoracic_aorta_male_adult_37_years	chr2	230417617	230417649	230417648	+	High_confidence	2	2	7	0.259945	2.584963	chr2	230417018	230417854	LINE|L1|L1ME3G	-	chr2	230416755	230470530	SP100|ENST00000409897.5	+	230416755,230417590,230440475,230442936,230444177,230446818,230449087,230449560,230450171,230461261,230462434,230464066,230466300,230467119,230469042,230470014	230416881,230417665,230440557,230443099,230444346,230446902,230449150,230449710,230450255,230461414,230462518,230464150,230466354,230467215,230469096,230470530	0.714286
thoracic_aorta_male_adult_37_years	chr2	227245980	227245998	227245986	+	RAMPAGE_only	3	3	14	0.519889	3.085055	chr2	227246019	227246071	LINE|L2|L2b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.785714
thoracic_aorta_male_adult_37_years	chr5	78549152	78549185	78549152	-	High_confidence	2	2	7	0.259945	2.521641	chr5	78548966	78549452	LTR|ERVL-MaLR|MLT1H	-	chr5	78485214	78549151	LHFPL2|ENST00000515007.6	-	78485214,78509783,78549025	78489153,78510398,78549151	0.714286
thoracic_aorta_male_adult_37_years	chr12	109179272	109179288	109179281	+	RAMPAGE_only	5	5	13	0.482754	3.026987	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109139396	109260147	ACACB|ENST00000377854.9	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260147	0.923077
thoracic_aorta_male_adult_37_years	chr7	131108707	131108708	131108707	-	RAMPAGE_only	23	23	24	0.891239	3.931838	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944159	131109916	LINC-PINT|NR_109854.1	-	130944159,130945719,130984052,131052424,131107719,131109736	130944889,130945791,130984109,131052555,131108803,131109916	0.958333
thoracic_aorta_male_adult_37_years	chr4	147864654	147864682	147864654	+	RAMPAGE_only	3	3	9	0.334214	2.725481	chr4	147864565	147864786	DNA|hAT-Charlie|MER58A	-	chr4	147860982	148072776	ARHGAP10|ENST00000506054.5	+	147860982,147875020,147879231,147881837,147906637,147909731,147913073,147939824,147946616,147955315,147965023,147966679,148023262,148046891,148063147,148064415,148071992	147866816,147875150,147879338,147881932,147906719,147909777,147913139,147939899,147946704,147955374,147965129,147966839,148023413,148047051,148063300,148064507,148072776	1.000000
thoracic_aorta_male_adult_37_years	chr5	139364688	139364714	139364707	+	RAMPAGE_only	2	2	10	0.371349	3.169925	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.900000
thoracic_aorta_male_adult_37_years	chr9	112275844	112275873	112275844	-	RAMPAGE_only	1	1	7	0.259945	2.584963	chr9	112275710	112275819	LINE|L1|L1ME4a	-	chr9	112217714	112333026	PTBP3|NM_001244898.1	-	112217714,112224132,112227410,112228379,112231379,112232098,112234819,112250928,112252677,112262434,112268048,112275843,112297840,112332783	112223983,112224210,112227627,112228472,112231413,112232238,112234897,112251103,112252788,112262599,112268195,112276013,112297916,112333026	0.857143
thoracic_aorta_male_adult_37_years	chr14	50756741	50756753	50756741	-	RAMPAGE_only	4	5	10	0.371349	3.121928	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.900000
thoracic_aorta_male_adult_37_years	chr16	2759903	2760062	2760017	+	High_confidence	22	27	217	8.058282	5.327520	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	0.967742
thoracic_aorta_male_adult_37_years	chr9	72363544	72363576	72363564	-	RAMPAGE_only	3	4	13	0.482754	3.700440	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72355954	72365197	STRG.73844.6	-	72355954,72356930,72359417,72360109,72360627,72364695	72356101,72357056,72359521,72360221,72363606,72365197	1.000000
thoracic_aorta_male_adult_37_years	chr9	129489221	129489252	129489251	+	High_confidence	3	4	14	0.519889	3.378783	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.642857
thoracic_aorta_male_adult_37_years	chr15	24985351	24985451	24985418	+	High_confidence	5	5	54	2.005287	4.516962	chr15	24985385	24985613	SINE|Alu|AluSz6	-	chr15	24985052	24988232	PWAR5|ENST00000624480.1	+	24985052	24988232	0.962963
thoracic_aorta_male_adult_37_years	chr1	6208681	6208682	6208681	-	High_confidence	180	181	182	6.758559	4.258409	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.978022
thoracic_aorta_male_adult_37_years	chr2	53936105	53936131	53936105	-	RAMPAGE_only	2	2	8	0.297080	3.000000	chr2	53935897	53936066	SINE|Alu|AluSx1	-	chr2	53923527	53970800	STRG.15138.5	-	53923527,53925958,53927393,53928116,53931834,53932667,53934604,53936086,53936763,53937390,53939955,53942158,53948420,53949142,53970542	53925689,53926023,53927483,53928303,53932100,53932760,53934727,53936161,53936827,53937540,53940000,53943843,53948537,53949283,53970800	1.000000
thoracic_aorta_male_adult_37_years	chr19	11539684	11539706	11539705	+	High_confidence	4	4	15	0.557024	3.182006	chr19	11539660	11539789	SINE|MIR|MIRb	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	0.866667
thoracic_aorta_male_adult_37_years	chr10	102779818	102779859	102779854	+	RAMPAGE_only	5	5	19	0.705564	3.947703	chr10	102779736	102779930	LINE|L2|L2c	-	chr10	102776248	102816267	WBP1L|ENST00000369889.5	+	102776248,102797992,102809892,102812594	102776417,102798095,102810054,102816267	0.684211
thoracic_aorta_male_adult_37_years	chr7	99410112	99410119	99410112	+	High_confidence	6	6	11	0.408484	3.095795	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.545455
thoracic_aorta_male_adult_37_years	chr14	58267173	58267239	58267202	-	RAMPAGE_only	12	12	32	1.188318	4.351410	chr14	58266998	58267301	SINE|Alu|AluSx	-	chr14	58266607	58298102	PSMA3-AS1|ENST00000556002.5	-	58266607,58273978,58291634,58297954	58267393,58274010,58291707,58298102	0.968750
thoracic_aorta_male_adult_37_years	chr15	75693080	75693154	75693085	-	RAMPAGE_only	23	24	203	7.538393	5.486044	chr15	75692930	75693052	SINE|MIR|MIR3	-	chr15	75674321	75712848	CSPG4|NM_001897.4	-	75674321,75677702,75682292,75682606,75682842,75684735,75685218,75687275,75693069,75712667	75677384,75677886,75682459,75682741,75683041,75684912,75685701,75690812,75693233,75712848	0.985222
thoracic_aorta_male_adult_37_years	chr17	2667103	2667196	2667195	+	High_confidence	21	22	71	2.636581	5.660242	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.915493
thoracic_aorta_male_adult_37_years	chr8	37331965	37331986	37331967	-	High_confidence	5	8	19	0.705564	3.947703	chr8	37331719	37332166	LTR|ERVL-MaLR|MLT1C	-	chr8	37329223	37331977	STRG.66936.1	-	37329223,37331672	37331166,37331977	0.947368
thoracic_aorta_male_adult_37_years	chr5	1585084	1585110	1585109	-	RAMPAGE_only	2	2	7	0.259945	2.584963	chr5	1584920	1585091	LTR|ERVK|HERVK9-int	-	chr5	1571842	1594586	STRG.41101.1	-	1571842,1576178,1579276,1584983,1589246,1593112,1594394	1574295,1576309,1581695,1585133,1589365,1593284,1594586	0.571429
thoracic_aorta_male_adult_37_years	chr1	65038942	65038943	65038942	-	RAMPAGE_only	8	8	10	0.371349	2.725481	chr1	65038640	65038937	SINE|Alu|AluSz6	-	chr1	65018328	65058430	STRG.4294.1	-	65018328,65031009,65052668	65030719,65052074,65058430	0.900000
thoracic_aorta_male_adult_37_years	chr1	1388680	1388715	1388680	-	High_confidence	2	2	11	0.408484	2.646439	chr1	1388612	1388794	SINE|Alu|AluSx1	+	chr1	1386494	1388713	CCNL2|ENST00000463260.5	-	1386494,1387776,1387953	1387582,1387869,1388713	0.909091
thoracic_aorta_male_adult_37_years	chr5	150125450	150125558	150125473	-	High_confidence	11	11	98	3.639224	5.506569	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113836	150125520	STRG.48086.4	-	150113836,150115150,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444	150115099,150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125520	0.877551
thoracic_aorta_male_adult_37_years	chr4	147909426	147909479	147909447	+	RAMPAGE_only	9	10	34	1.262588	3.715018	chr4	147908966	147909613	LTR|ERVL|MER21C	-	chr4	147881866	148072775	STRG.39695.5	+	147881866,147906637,147913073,147939824,147946616,147955315,147965023,147966679,148023262,148046891,148063147,148064415,148071992	147881932,147909777,147913139,147939899,147946704,147955374,147965129,147966839,148023413,148047051,148063300,148064507,148072775	0.911765
thoracic_aorta_male_adult_37_years	chr3	139344535	139344555	139344547	+	High_confidence	8	8	26	0.965508	4.161978	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.923077
thoracic_aorta_male_adult_37_years	chr4	119220720	119220743	119220720	+	RAMPAGE_only	3	3	11	0.408484	3.095795	chr4	119220704	119221185	LTR|ERV1|MER31A	-	chr4	119212742	119237311	STRG.38509.12	+	119212742,119217549,119220115	119214222,119217673,119237311	1.000000
thoracic_aorta_male_adult_37_years	chr9	113582165	113582240	113582239	+	High_confidence	10	10	23	0.854104	4.001823	chr9	113582216	113582304	SINE|MIR|MIRb	+	chr9	113581635	113597737	RGS3|ENST00000487344.1	+	113581635,113591332,113594429,113594918,113595598,113596767	113584427,113591397,113594531,113594980,113595765,113597737	1.000000
thoracic_aorta_male_adult_37_years	chr8	53523862	53523964	53523862	-	High_confidence	46	50	197	7.315583	6.354204	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53511785	53523931	STRG.67356.2	-	53511785,53521018,53523328	53516954,53521379,53523931	0.979695
thoracic_aorta_male_adult_37_years	chr17	75590514	75590515	75590514	+	High_confidence	8	9	10	0.371349	3.321928	chr17	75590498	75590621	SINE|MIR|MIRc	-	chr17	75590340	75591246	MYO15B|ENST00000578564.5	+	75590340,75590625,75591171	75590385,75590689,75591246	0.600000
thoracic_aorta_male_adult_37_years	chr3	9391714	9391744	9391720	-	High_confidence	3	4	16	0.594159	3.577820	chr3	9391557	9391833	DNA|TcMar-Tigger|Tigger1	-	chr3	9389914	9391822	THUMPD3-AS1|ENST00000522221.1	-	9389914,9391426	9390497,9391822	0.562500
thoracic_aorta_male_adult_37_years	chr3	68992258	68992259	68992258	-	RAMPAGE_only	26	26	33	1.225453	4.389365	chr3	68992098	68993676	LTR|ERVL-MaLR|THE1A-int	-	chr3	68977179	69009846	STRG.28030.9	-	68977179,68978332,68979667,68982810,68987444,68988294,68988505,68988924,68991821,69004377,69005139,69007712,69008427,69009636	68977764,68978435,68979787,68982872,68987513,68988381,68988577,68989017,69001714,69004482,69005234,69007821,69008528,69009846	0.939394
thoracic_aorta_male_adult_37_years	chr3	151531342	151531374	151531371	-	RAMPAGE_only	19	26	54	2.005287	5.325252	chr3	151528406	151534796	LINE|L1|L1PA7	+	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.555556
thoracic_aorta_male_adult_37_years	chr21	28090295	28090387	28090339	+	High_confidence	17	23	100	3.713494	4.485834	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.930000
thoracic_aorta_male_adult_37_years	chr1	202582239	202582272	202582271	+	RAMPAGE_only	2	2	8	0.297080	3.000000	chr1	202581884	202582432	LINE|CR1|L3	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	1.000000
thoracic_aorta_male_adult_37_years	chr19	51886854	51886864	51886854	-	RAMPAGE_only	3	3	8	0.297080	2.750000	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51878400	51887889	ZNF577|ENST00000638538.1	-	51878400,51880322,51880678,51886115,51886820,51887831	51878515,51880401,51880877,51886145,51886912,51887889	0.625000
thoracic_aorta_male_adult_37_years	chr8	117955726	117955789	117955757	-	RAMPAGE_only	10	14	46	1.708207	3.458745	chr8	117955568	117955856	SINE|Alu|AluSz6	-	chr8	117879550	117997227	STRG.69914.9	-	117879550,117887982	117887481,117997227	0.934783
thoracic_aorta_male_adult_37_years	chr19	52616962	52616989	52616962	-	RAMPAGE_only	2	2	9	0.334214	2.750000	chr19	52616863	52617165	LINE|L1|L1PA8	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	0.888889
thoracic_aorta_male_adult_37_years	chr19	58306086	58306116	58306086	+	High_confidence	4	4	21	0.779834	3.820889	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.714286
thoracic_aorta_male_adult_37_years	chr22	31093845	31093871	31093870	+	High_confidence	3	3	8	0.297080	2.500000	chr22	31093886	31094011	SINE|MIR|MIRc	+	chr22	31093367	31104623	SMTN|ENST00000493335.5	+	31093367,31093783,31095302,31095533,31095851,31096997,31098666,31099061,31099744,31100884,31104315	31093678,31093876,31095455,31095609,31096897,31097338,31098840,31099179,31099896,31101049,31104623	0.625000
thoracic_aorta_male_adult_37_years	chr7	90154183	90154184	90154183	+	High_confidence	9	9	14	0.519889	3.664498	chr7	90154032	90154206	DNA|hAT-Charlie|MER5A	+	chr7	90154374	90164827	STEAP1|ENST00000297205.6	+	90154374,90159757,90160804,90161913,90164476	90154543,90159872,90161317,90162078,90164827	1.000000
thoracic_aorta_male_adult_37_years	chr1	15776893	15776939	15776893	+	High_confidence	19	26	52	1.931017	4.958563	chr1	15776582	15776902	SINE|Alu|AluSx3	+	chr1	15777014	15784685	FBLIM1|ENST00000514156.1	+	15777014,15777169,15784547	15777078,15777287,15784685	0.557692
thoracic_aorta_male_adult_37_years	chr14	68877750	68877804	68877803	-	RAMPAGE_only	10	10	22	0.816969	3.879664	chr14	68877754	68877822	SINE|MIR|MIRb	-	chr14	68874322	68879022	ACTN1|ENST00000553882.1	-	68874322,68877081	68875017,68879022	1.000000
thoracic_aorta_male_adult_37_years	chrX	147937542	147937599	147937542	+	RAMPAGE_only	5	6	20	0.742699	3.846439	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147951116	STRG.141056.5	+	147940580,147943130,147944868,147945533,147948733	147940662,147943326,147945051,147945616,147951116	0.900000
thoracic_aorta_male_adult_37_years	chr9	92536601	92536602	92536601	-	High_confidence	103	116	116	4.307653	5.867692	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.836207
thoracic_aorta_male_adult_37_years	chrX	149533216	149533245	149533239	-	RAMPAGE_only	2	2	9	0.334214	3.000000	chrX	149533200	149533254	LINE|L2|L2a	-	chrX	149527590	149539752	LINC00893|NR_027455.5	-	149527590,149529366,149529512,149532881,149533629,149536173,149537632,149538114,149538723,149539700	149528358,149529428,149529593,149533055,149534374,149536255,149537778,149538172,149538906,149539752	0.555556
thoracic_aorta_male_adult_37_years	chr2	241843081	241843143	241843115	+	High_confidence	4	4	26	0.965508	4.085055	chr2	241842855	241843211	LINE|L1|L1MB3	-	chr2	241843253	241843723	STRG.24045.1	+	241843253	241843723	0.807692
thoracic_aorta_male_adult_37_years	chr3	62150038	62150064	62150063	-	High_confidence	8	8	22	0.816969	3.879664	chr3	62149964	62150083	LINE|L2|L2a	+	chr3	62138073	62150062	STRG.27997.1	-	62138073,62149845	62138214,62150062	0.681818
thoracic_aorta_male_adult_37_years	chr20	50131135	50131143	50131139	-	High_confidence	21	21	43	1.596802	4.635366	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.906977
thoracic_aorta_male_adult_37_years	chr16	19119435	19119489	19119488	+	RAMPAGE_only	9	9	26	0.965508	3.599484	chr16	19119461	19119594	DNA|hAT-Charlie|Charlie8	-	chr16	19114382	19121629	ITPRIPL2|ENST00000381440.4	+	19114382	19121629	0.923077
thoracic_aorta_male_adult_37_years	chr7	158743801	158743822	158743801	-	High_confidence	5	5	10	0.371349	2.947703	chr7	158743798	158744083	SINE|Alu|AluSx3	+	chr7	158733612	158744217	ESYT2|ENST00000435514.3	-	158733612,158734421,158735502,158737047,158739022,158741522,158743528	158734252,158734471,158735608,158737179,158739121,158741896,158744217	0.600000
thoracic_aorta_male_adult_37_years	chr1	15785467	15785560	15785526	+	RAMPAGE_only	45	48	336	12.477340	4.445604	chr1	15785352	15785645	SINE|Alu|AluSz6	+	chr1	15764963	15786589	FBLIM1|NM_001024216.1	+	15764963,15770408,15774617,15777169,15784547	15765233,15770578,15774796,15777287,15786589	0.994048
thoracic_aorta_male_adult_37_years	chr10	80176123	80176132	80176123	-	RAMPAGE_only	6	6	13	0.482754	3.085055	chr10	80176083	80176485	LINE|L1|L1ME4b	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	0.846154
thoracic_aorta_male_adult_37_years	chr1	1575362	1575375	1575374	-	High_confidence	7	8	17	0.631294	3.852169	chr1	1575374	1575512	LINE|L2|L2	-	chr1	1541672	1574882	SSU72|NM_014188.2	-	1541672,1543868,1544862,1564772,1574477	1542167,1543987,1545002,1564916,1574882	0.588235
thoracic_aorta_male_adult_37_years	chr5	122074134	122074159	122074134	-	RAMPAGE_only	4	4	13	0.482754	3.026987	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065943	122076083	LOX|ENST00000505593.5	-	122065943,122070052,122070493,122074012,122075403,122076017	122066749,122070168,122070589,122074169,122075541,122076083	1.000000
thoracic_aorta_male_adult_37_years	chr6	111387776	111387801	111387800	-	RAMPAGE_only	5	6	11	0.408484	2.921928	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.818182
thoracic_aorta_male_adult_37_years	chr5	142875156	142875165	142875156	+	High_confidence	2	2	7	0.259945	2.521641	chr5	142875200	142875313	SINE|MIR|MIR3	+	chr5	142874892	142919443	ARHGAP26|ENST00000475287.2	+	142874892,142879373,142885297,142894237,142901934,142903539,142907703,142913198,142919210	142875171,142879445,142885399,142894348,142902039,142903669,142907804,142913293,142919443	0.857143
thoracic_aorta_male_adult_37_years	chr15	41278873	41278887	41278886	+	RAMPAGE_only	5	5	10	0.371349	2.646439	chr15	41278930	41279226	SINE|Alu|AluSg	+	chr15	41231238	41281887	CHP1|NM_007236.4	+	41231238,41243666,41256909,41262755,41270556,41278766,41279335	41231449,41243739,41256990,41262883,41270618,41278889,41281887	1.000000
thoracic_aorta_male_adult_37_years	chr2	38083071	38083078	38083071	+	High_confidence	3	3	6	0.222810	2.584963	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.666667
thoracic_aorta_male_adult_37_years	chr19	37465349	37465350	37465349	-	RAMPAGE_only	5	5	7	0.259945	2.584963	chr19	37464765	37465454	LINE|L2|L2a	+	chr19	37411154	37467229	ZNF569|ENST00000392149.6	-	37411154,37425867,37426251,37444906,37467086	37414419,37425963,37426378,37444964,37467229	0.571429
thoracic_aorta_male_adult_37_years	chr15	93863039	93863082	93863065	+	High_confidence	17	18	56	2.079557	5.157988	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.839286
thoracic_aorta_male_adult_37_years	chr16	11895208	11895209	11895208	-	High_confidence	5	5	8	0.297080	2.521641	chr16	11895148	11895448	SINE|Alu|AluSq2	+	chr16	11890792	11895284	GSPT1|ENST00000567631.1	-	11890792,11894953	11891139,11895284	0.500000
thoracic_aorta_male_adult_37_years	chr20	35713365	35713374	35713372	-	High_confidence	3	6	10	0.371349	2.503258	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.900000
thoracic_aorta_male_adult_37_years	chr20	35171708	35171711	35171710	+	High_confidence	3	6	9	0.334214	2.750000	chr20	35171638	35171736	SINE|MIR|MIR3	+	chr20	35171870	35188253	STRG.129355.2	+	35171870,35174701,35176167,35179162	35172224,35174953,35178333,35188253	0.888889
thoracic_aorta_male_adult_37_years	chr20	44696110	44696112	44696111	-	High_confidence	8	12	13	0.482754	3.418296	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44656450	44696096	AL139352.1|ENST00000415889.2	-	44656450,44658994,44659710,44663204,44695390,44696002	44657051,44659181,44659778,44663553,44695507,44696096	0.538462
thoracic_aorta_male_adult_37_years	chr2	55618850	55618887	55618850	-	High_confidence	7	7	19	0.705564	3.836592	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55618144	55618856	STRG.15255.1	-	55618144	55618856	0.842105
thoracic_aorta_male_adult_37_years	chr2	232816731	232816766	232816731	+	RAMPAGE_only	19	20	72	2.673716	5.193750	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.930556
thoracic_aorta_male_adult_37_years	chr6	137218708	137218712	137218708	-	High_confidence	2	3	8	0.297080	2.807355	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.625000
thoracic_aorta_male_adult_37_years	chr1	166850112	166850135	166850124	+	RAMPAGE_only	14	14	33	1.225453	4.288910	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166848006	166856282	STRG.8318.3	+	166848006,166849787	166849733,166856282	0.969697
thoracic_aorta_male_adult_37_years	chr4	119504539	119504577	119504539	-	RAMPAGE_only	10	11	28	1.039778	4.039149	chr4	119503954	119504512	LINE|L1|L1PA17	-	chr4	119494394	119627287	PDE5A|NM_033430.2	-	119494394,119501169,119502580,119504535,119505854,119507603,119511046,119519044,119520934,119525548,119538959,119542458,119552549,119553637,119560295,119562832,119565320,119567072,119596522,119606708,119627149	119498738,119501253,119502655,119504599,119505932,119507704,119511134,119519139,119521060,119525695,119539019,119542634,119552637,119553746,119560363,119562970,119565410,119567144,119596612,119607297,119627287	0.892857
thoracic_aorta_male_adult_37_years	chr2	215384631	215384654	215384631	-	RAMPAGE_only	2	2	9	0.334214	3.000000	chr2	215384514	215384594	LINE|L1|L1ME4a	-	chr2	215360861	215393721	FN1|ENST00000492816.6	-	215360861,215361968,215364878,215365504,215367862,215370293,215371908,215372108,215373321,215375213,215375628,215376497,215378174,215379129,215383327,215384019,215386688,215388211,215391631	215361626,215362079,215364985,215365630,215368027,215370432,215372015,215372375,215373411,215375393,215375718,215376674,215378262,215382325,215383483,215384976,215386958,215388301,215393721	0.888889
thoracic_aorta_male_adult_37_years	chr7	111940125	111940147	111940125	-	RAMPAGE_only	2	2	9	0.334214	2.500000	chr7	111940063	111940135	LINE|RTE-BovB|MamRTE1	-	chr7	111728273	112004131	DOCK4|ENST00000445943.5	-	111728273,111732225,111735053,111736916,111739133,111739395,111741093,111741539,111742012,111746333,111747266,111755514,111758623,111760180,111765117,111767031,111769528,111778275,111782863,111783856,111784096,111788661,111790456,111808820,111809300,111811873,111822361,111834587,111840762,111844762,111846998,111863371,111867983,111869573,111871989,111872268,111872466,111877029,111895611,111900373,111901676,111915778,111935539,111940109,111944810,111945716,111977131,111984305,111989014,111994134,111998447,112000493,112004047	111728720,111732287,111735167,111736989,111739243,111739477,111741214,111741661,111742132,111746417,111747443,111755601,111758790,111760322,111765222,111767118,111769677,111778369,111782924,111783952,111784123,111788747,111790605,111808879,111809401,111811949,111822456,111834686,111840870,111844897,111847126,111863564,111868154,111869655,111872090,111872352,111872564,111877186,111895718,111900536,111901801,111915904,111935628,111940242,111944871,111945798,111977283,111984390,111989163,111994231,111998503,112000534,112004131	0.888889
thoracic_aorta_male_adult_37_years	chr4	5809585	5809596	5809585	+	RAMPAGE_only	4	4	9	0.334214	3.000000	chr4	5809619	5809815	SINE|MIR|MIR3	+	chr4	5793607	5830298	STRG.34172.6	+	5793607,5797021,5798585,5801949,5804729,5808200,5809517,5810338,5810952,5818210	5793717,5797232,5798792,5802094,5804841,5808327,5809611,5810450,5814162,5830298	0.888889
thoracic_aorta_male_adult_37_years	chr5	138170356	138170376	138170356	-	High_confidence	2	2	9	0.334214	2.500000	chr5	138170278	138170360	DNA|hAT-Ac|OldhAT1	+	chr5	138162764	138170880	STRG.46955.6	-	138162764,138164086,138164319,138164713,138165827,138167933,138168469,138169221,138170344,138170831	138163344,138164133,138164413,138165166,138166727,138168078,138168688,138169358,138170409,138170880	0.888889
thoracic_aorta_male_adult_37_years	chr8	11864404	11864439	11864404	-	RAMPAGE_only	4	4	23	0.854104	3.784942	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.695652
thoracic_aorta_male_adult_37_years	chr11	114282389	114282430	114282389	+	RAMPAGE_only	11	11	27	1.002643	4.356558	chr11	114282328	114282501	LINE|L1|L1ME5	+	chr11	114059592	114312515	STRG.89637.1	+	114059592,114063210,114156336,114186951,114242166,114247197,114250325,114293681	114061561,114064568,114156434,114187038,114242337,114247365,114293447,114312515	1.000000
thoracic_aorta_male_adult_37_years	chr3	114380866	114380917	114380866	-	RAMPAGE_only	13	13	28	1.039778	2.643052	chr3	114380802	114381001	SINE|MIR|MIR3	+	chr3	114338652	114383641	ZBTB20|ENST00000474710.5	-	114338652,114350273,114380216,114380776,114383615	114339426,114351878,114380404,114380940,114383641	0.964286
thoracic_aorta_male_adult_37_years	chr10	29530087	29530098	29530097	-	RAMPAGE_only	3	3	7	0.259945	2.807355	chr10	29529889	29530201	SINE|Alu|AluJr	+	chr10	29457347	29634972	SVIL|NM_021738.2	-	29457347,29458433,29462276,29463491,29465594,29467741,29470275,29471137,29473837,29480536,29481583,29484655,29486084,29486409,29487162,29488600,29490846,29493213,29494913,29495091,29499115,29512734,29522409,29523450,29524471,29526960,29529704,29530606,29531253,29532001,29532528,29535988,29550596,29554782,29555050,29563200,29569254,29634419	29458333,29458589,29462401,29463635,29465750,29467875,29470483,29471243,29473989,29480813,29481728,29484831,29486230,29486557,29487299,29488756,29491019,29493391,29495000,29495181,29499263,29512861,29522635,29524027,29524715,29527056,29529844,29530668,29531288,29532172,29533458,29536069,29551263,29554934,29555108,29563292,29569312,29634972	0.857143
thoracic_aorta_male_adult_37_years	chr7	128631677	128631695	128631677	+	RAMPAGE_only	5	5	9	0.334214	2.725481	chr7	128631488	128631793	SINE|Alu|AluJo	-	chr7	128626292	128653243	STRG.64234.7	+	128626292,128629393,128631679,128638773,128642216,128648791,128651037,128651188	128626530,128629458,128631869,128641379,128642281,128648982,128651095,128653243	1.000000
thoracic_aorta_male_adult_37_years	chr1	203799523	203799542	203799523	+	High_confidence	9	9	18	0.668429	3.969816	chr1	203799077	203799888	DNA|hAT-Ac|OldhAT1	+	chr1	203799334	203854118	ZBED6|ENST00000545588.5	+	203799334,203816925,203818569,203828298,203829450,203829779,203830122,203831660,203833790,203837965,203840305,203847183,203848330,203849710,203850514,203851056,203852140	203803016,203817124,203818689,203828422,203829654,203829896,203830203,203831771,203833853,203838064,203840374,203847687,203848407,203850026,203850681,203851124,203854118	0.944444
thoracic_aorta_male_adult_37_years	chr1	33031619	33031620	33031619	-	RAMPAGE_only	8	8	8	0.297080	2.750000	chr1	33031545	33031766	SINE|MIR|MIRb	+	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	1.000000
thoracic_aorta_male_adult_37_years	chr17	41871711	41871800	41871747	-	RAMPAGE_only	7	9	35	1.299723	4.801970	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.800000
thoracic_aorta_male_adult_37_years	chr5	34244815	34244819	34244818	-	High_confidence	3	5	11	0.408484	3.095795	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.636364
thoracic_aorta_male_adult_37_years	chr4	15308329	15308368	15308367	-	RAMPAGE_only	5	6	13	0.482754	3.084963	chr4	15307674	15309280	LTR|ERVL-MaLR|THE1D-int	-	chr4	15295416	15349990	STRG.34808.6	-	15295416	15349990	0.923077
thoracic_aorta_male_adult_37_years	chr2	227164611	227164646	227164620	+	High_confidence	12	12	26	0.965508	4.501629	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.846154
thoracic_aorta_male_adult_37_years	chr1	20028514	20028516	20028515	+	High_confidence	99	129	150	5.570241	6.286089	chr1	20028464	20028814	LTR|ERV1|LTR46-int	-	chr1	20028525	20090780	PLA2G5|ENST00000489871.5	+	20028525,20059631,20068872,20070293,20084820,20086082,20089788,20090567	20028709,20059692,20069032,20070465,20084870,20086227,20089895,20090780	0.666667
thoracic_aorta_male_adult_37_years	chr10	89888037	89888047	89888037	+	High_confidence	3	3	9	0.334214	2.750000	chr10	89888002	89888814	LTR|ERV1|LTR8B	+	chr10	89888951	89914898	STRG.81763.2	+	89888951,89914635	89889166,89914898	0.666667
thoracic_aorta_male_adult_37_years	chr7	30561569	30561570	30561569	-	High_confidence	5	5	7	0.259945	2.807355	chr7	30561212	30561820	DNA|hAT?|MER99	+	chr7	30516974	30561516	GARS-DT|ENST00000578293.6	-	30516974,30524366,30550635,30551317,30552099,30561465	30517498,30524486,30550781,30551395,30552179,30561516	0.571429
thoracic_aorta_male_adult_37_years	chr1	33021381	33021417	33021416	-	RAMPAGE_only	7	7	22	0.816969	3.425119	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33007983	33013990	STRG.2007.9	-	33007983,33009222	33009105,33013990	0.954545
thoracic_aorta_male_adult_37_years	chr16	24795735	24795757	24795735	+	RAMPAGE_only	2	2	7	0.259945	2.521641	chr16	24795680	24795885	SINE|MIR|MIRc	-	chr16	24730130	24804290	STRG.112606.10	+	24730130,24776932,24789231,24794543,24797914	24758360,24777358,24791817,24797570,24804290	0.857143
thoracic_aorta_male_adult_37_years	chr3	111814320	111814321	111814320	+	RAMPAGE_only	10	10	10	0.371349	2.846439	chr3	111814117	111814498	LTR|ERVL|MLT2A1	+	chr3	111732496	111976267	PHLDB2|ENST00000393923.7	+	111732496,111845820,111884063,111913318,111919071,111920281,111939474,111940534,111945267,111948931,111952571,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111732703,111845935,111885412,111913702,111919215,111920419,111939630,111940645,111945357,111949075,111952712,111954029,111962312,111966703,111967824,111969909,111973817,111976267	0.900000
thoracic_aorta_male_adult_37_years	chr20	36890526	36890793	36890642	-	RAMPAGE_only	112	117	804	29.856492	5.510545	chr20	36890464	36890776	SINE|Alu|AluSq2	-	chr20	36890268	36951707	SAMHD1|ENST00000646904.1	-	36890268,36897821,36898439,36904156,36905363,36911217,36912460,36916721,36916948,36917151,36919363,36927181,36930759,36935028,36941038,36946737,36951435	36893066,36897959,36898544,36904249,36905503,36911333,36912552,36916830,36917049,36917215,36919519,36927252,36930875,36935189,36941111,36946804,36951707	0.992537
thoracic_aorta_male_adult_37_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	21	21	21	0.779834	3.232102	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
thoracic_aorta_male_adult_37_years	chr19	53874813	53875004	53874882	+	RAMPAGE_only	14	15	185	6.869964	5.660544	chr19	53874763	53874953	SINE|Alu|AluSx	-	chr19	53869405	53876435	MYADM|ENST00000391769.2	+	53869405,53869753,53873527	53869598,53869838,53876435	1.000000
thoracic_aorta_male_adult_37_years	chr12	20009809	20009826	20009809	+	RAMPAGE_only	4	4	8	0.297080	2.750000	chr12	20009713	20010468	LTR|ERV1|LTR12	-	chr12	19966360	20018425	STRG.92161.3	+	19966360,20008644,20009720	19974727,20008767,20018425	1.000000
thoracic_aorta_male_adult_37_years	chr7	128648852	128648861	128648860	+	RAMPAGE_only	3	3	8	0.297080	3.000000	chr7	128648764	128648951	SINE|Alu|AluJb	-	chr7	128641240	128660998	LINC01000|NR_024368.1	+	128641240,128642216,128648791,128651037,128651188	128641379,128642281,128648982,128651095,128660998	0.750000
thoracic_aorta_male_adult_37_years	chr11	10574231	10574455	10574454	-	RAMPAGE_only	60	61	479	17.787636	4.743028	chr11	10574346	10574533	LINE|L2|L2c	-	chr11	10573090	10652185	MRVI1|ENST00000424001.5	-	10573090,10580454,10581866,10591547,10593491,10594145,10600917,10603119,10604404,10606741,10609727,10623777,10625965,10627715,10627972,10628750,10629537,10631990,10652024	10576575,10580589,10581986,10591612,10593599,10594195,10601059,10603251,10604545,10606772,10609851,10623856,10626583,10627763,10628025,10628828,10629711,10632061,10652185	0.997912
thoracic_aorta_male_adult_37_years	chr22	41583996	41584019	41583996	-	RAMPAGE_only	3	3	15	0.557024	3.139572	chr22	41583835	41583953	SINE|MIR|MIRc	-	chr22	41576902	41585402	PMM1|ENST00000482178.5	-	41576902,41577807,41578805,41583958,41584526	41577440,41577923,41578881,41584372,41585402	1.000000
thoracic_aorta_male_adult_37_years	chr8	143039256	143039267	143039266	+	High_confidence	13	14	31	1.151183	3.478118	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.903226
thoracic_aorta_male_adult_37_years	chr15	42675603	42675613	42675612	+	High_confidence	5	5	9	0.334214	3.000000	chr15	42675586	42675640	LINE|L2|L2a	+	chr15	42675495	42682213	STARD9|ENST00000562139.1	+	42675495,42675871,42681421,42682103	42675746,42675975,42681612,42682213	0.777778
thoracic_aorta_male_adult_37_years	chr6	43025311	43025329	43025311	+	High_confidence	3	3	7	0.259945	2.521641	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.571429
thoracic_aorta_male_adult_37_years	chr19	54448601	54448608	54448601	+	High_confidence	14	14	22	0.816969	4.095795	chr19	54448651	54448966	SINE|Alu|AluSg	+	chr19	54448886	54462037	LENG8|ENST00000326764.9	+	54448886,54451289,54452092,54452650,54453545,54454429,54454950,54455363,54455966,54456324,54456635,54457746,54457933,54458102,54458313,54460765	54449310,54451382,54452267,54452752,54453656,54454682,54455092,54455567,54456245,54456465,54456921,54457848,54458002,54458232,54458521,54462037	0.772727
thoracic_aorta_male_adult_37_years	chr7	101217578	101217599	101217578	-	High_confidence	8	9	25	0.928373	4.175736	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.920000
thoracic_aorta_male_adult_37_years	chr3	9792219	9792226	9792219	-	High_confidence	6	6	10	0.371349	2.947703	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.500000
thoracic_aorta_male_adult_37_years	chr4	79245321	79245325	79245321	+	RAMPAGE_only	2	3	7	0.259945	2.584963	chr4	79244642	79246390	Retroposon|SVA|SVA_B	+	chr4	79237571	79246566	STRG.36730.8	+	79237571	79246566	0.571429
thoracic_aorta_male_adult_37_years	chrX	71383095	71383147	71383129	+	RAMPAGE_only	3	3	12	0.445619	3.188722	chrX	71383170	71383464	LINE|L1|L1MC5a	+	chrX	71366304	71464046	TAF1|ENST00000276072.7	+	71366304,71367498,71368053,71375166,71376949,71377602,71378234,71378823,71381742,71382535,71382760,71382990,71383961,71384944,71387260,71388236,71388737,71389584,71392568,71392874,71393300,71394066,71397252,71398571,71401527,71406637,71407573,71407973,71421308,71423116,71423973,71424153,71454169,71454740,71458240,71459551,71460625,71463823	71366494,71367613,71368170,71375286,71377191,71377821,71378453,71379031,71381919,71382663,71382868,71383164,71384135,71385049,71387461,71388378,71388868,71389665,71392718,71392994,71393476,71394245,71397466,71398737,71401739,71406746,71407672,71408151,71421376,71423239,71424066,71424238,71454237,71454857,71458366,71459708,71460803,71464046	0.916667
thoracic_aorta_male_adult_37_years	chr3	123709025	123709026	123709025	-	RAMPAGE_only	6	6	6	0.222810	2.584963	chr3	123708971	123709134	SINE|MIR|MIR	+	chr3	123614104	123793841	MYLK|ENST00000475616.5	-	123614104,123618638,123620206,123626817,123629473,123638070,123640286,123647223,123648970,123649161,123657125,123664104,123666218,123667136,123682223,123692734,123700019,123701437,123707753,123708697,123709755,123722127,123725943,123732895,123733686,123735397,123737377,123738896,123739952,123752330,123793676	123614349,123618770,123620336,123626941,123629626,123638194,123640504,123647427,123649064,123649194,123657428,123664258,123666346,123667187,123682310,123692851,123701005,123701509,123708003,123708895,123709893,123722280,123726078,123733102,123734222,123735416,123737543,123739062,123740001,123752538,123793841	0.666667
thoracic_aorta_male_adult_37_years	chr5	82279566	82279595	82279566	+	High_confidence	2	2	10	0.371349	3.169925	chr5	82279305	82279599	LINE|L2|L2a	-	chr5	82279461	82318803	ATP6AP1L|ENST00000380167.8	+	82279461,82280959,82295492,82303486,82303773,82304614,82304933,82310156,82312610,82317997	82279878,82281011,82295544,82303527,82303832,82304850,82305481,82310207,82312851,82318803	0.800000
thoracic_aorta_male_adult_37_years	chr7	154928503	154928504	154928503	+	High_confidence	17	17	25	0.928373	4.251629	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.720000
thoracic_aorta_male_adult_37_years	chr5	94901224	94901225	94901224	-	RAMPAGE_only	9	9	12	0.445619	3.277613	chr5	94901056	94901420	LTR|ERVL-MaLR|THE1B	-	chr5	94706590	94929701	MCTP1|ENST00000505078.5	-	94706590,94708511,94710817,94714776,94779109,94799012,94868332,94870416,94870871,94871314,94873138,94888878,94894648,94909250,94912805,94929627	94707567,94708609,94710927,94714886,94779163,94799132,94868452,94870491,94870973,94871417,94873241,94888972,94894835,94909381,94912976,94929701	0.583333
thoracic_aorta_male_adult_37_years	chr19	3062922	3062986	3062924	-	High_confidence	10	15	45	1.671072	4.652421	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	1.000000
thoracic_aorta_male_adult_37_years	chr7	128622497	128622529	128622497	+	High_confidence	13	14	48	1.782477	4.970176	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128621706	128653243	STRG.64234.5	+	128621706,128623574,128625796,128626294,128629393,128631679,128638773,128642216,128648791,128651037,128651188	128622694,128623781,128625855,128626530,128629458,128631869,128641379,128642281,128648982,128651095,128653243	0.895833
thoracic_aorta_male_adult_37_years	chr11	61876682	61876734	61876733	-	High_confidence	7	8	18	0.668429	3.690117	chr11	61876705	61876801	SINE|MIR|MIRb	-	chr11	61873759	61876871	FADS3|ENST00000525094.5	-	61873759,61875850,61876110,61876370,61876865	61873865,61875976,61876190,61876455,61876871	0.500000
thoracic_aorta_male_adult_37_years	chr11	11963557	11964170	11963884	-	RAMPAGE_only	114	117	974	36.169431	6.644011	chr11	11963694	11963925	SINE|MIR|MIRc	+	chr11	11963105	12008630	DKK3|ENST00000527132.1	-	11963105,12008369	11964469,12008630	0.993840
thoracic_aorta_male_adult_37_years	chr11	10690276	10690367	10690364	-	RAMPAGE_only	4	5	37	1.373993	4.756619	chr11	10690108	10690385	SINE|Alu|AluSz6	+	chr11	10632027	10693514	MRVI1|ENST00000529547.1	-	10632027,10633967,10652024,10658383,10693461	10632061,10634071,10652182,10658579,10693514	0.648649
thoracic_aorta_male_adult_37_years	chr20	44714278	44714279	44714278	+	High_confidence	5	5	7	0.259945	2.807355	chr20	44714278	44714680	LINE|L2|L2b	+	chr20	44714281	44727481	STRG.129715.2	+	44714281,44715365,44719896,44724737,44727086	44714373,44715450,44720113,44724992,44727481	0.857143
thoracic_aorta_male_adult_37_years	chr5	154287451	154287470	154287469	+	High_confidence	4	4	8	0.297080	3.000000	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	1.000000
thoracic_aorta_male_adult_37_years	chr14	74553287	74553316	74553315	-	RAMPAGE_only	5	5	25	0.928373	3.684561	chr14	74553156	74553270	LINE|L2|L2b	-	chr14	74500731	74612072	LTBP2|ENST00000556690.5	-	74500731,74501440,74502652,74503218,74503468,74503925,74504777,74504982,74506047,74506697,74507972,74508603,74508829,74509237,74509733,74510090,74511244,74516821,74521910,74522789,74525123,74526074,74527346,74528482,74528957,74532425,74535925,74549862,74551063,74552186,74552891,74555502,74585853,74603634,74611450	74501029,74501590,74502934,74503386,74503606,74504054,74504861,74505174,74506191,74506823,74508095,74508729,74508952,74509363,74509859,74510213,74511364,74516941,74522039,74522918,74525225,74526114,74527366,74528698,74529122,74532548,74536000,74549965,74551350,74552393,74553062,74555693,74586118,74603705,74612072	0.520000
thoracic_aorta_male_adult_37_years	chr16	15782794	15782804	15782803	-	High_confidence	5	5	14	0.519889	3.546594	chr16	15782761	15782860	DNA|hAT-Tip100|MER91C	+	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.928571
thoracic_aorta_male_adult_37_years	chr6	75891280	75891305	75891304	+	RAMPAGE_only	2	3	6	0.222810	2.584963	chr6	75891350	75891661	SINE|Alu|AluY	+	chr6	75890209	75908560	MYO6|ENST00000430435.1	+	75890209,75891227,75892529,75894813,75895230,75907604,75908495	75890265,75891306,75892690,75894840,75895260,75907708,75908560	0.500000
thoracic_aorta_male_adult_37_years	chr6	169231381	169231405	169231396	-	RAMPAGE_only	6	7	34	1.262588	3.949699	chr6	169231041	169231495	LTR|ERVL-MaLR|MLT1D	+	chr6	169216191	169248680	STRG.57519.3	-	169216191,169220197,169221429,169222196,169223247,169225144,169226179,169229571,169232663,169232889,169234733,169237169,169237624,169239598,169240451,169241761,169246196,169248416	169217829,169220337,169221527,169222468,169223475,169225379,169228281,169232198,169232816,169233017,169234907,169237346,169237795,169239695,169240592,169241958,169246281,169248680	0.941176
thoracic_aorta_male_adult_37_years	chr11	108224074	108224075	108224074	+	High_confidence	8	8	12	0.445619	3.027169	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.833333
thoracic_aorta_male_adult_37_years	chr12	53464809	53464829	53464809	+	RAMPAGE_only	2	2	12	0.445619	3.095795	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.666667
thoracic_aorta_male_adult_37_years	chr15	22566309	22566310	22566309	+	RAMPAGE_only	4	4	7	0.259945	2.521641	chr15	22566189	22566330	DNA|TcMar-Tigger|MER2	-	chr15	22537789	22590579	STRG.105917.6	+	22537789,22539096,22541994,22542482,22542722,22542942,22545766,22546429,22546677,22546937,22547880,22554384,22556011,22556909,22559788,22560787,22561558,22564388,22566304,22569148,22572928,22573278,22573974,22577158,22577429,22579583,22587343,22589679	22538096,22539247,22542209,22542615,22542850,22543138,22545900,22546600,22546820,22547089,22548072,22554572,22556204,22557092,22559970,22561454,22563087,22564532,22566362,22569291,22573181,22573415,22574073,22577332,22577555,22579723,22587391,22590579	1.000000
thoracic_aorta_male_adult_37_years	chr1	153686708	153686731	153686714	+	RAMPAGE_only	17	21	76	2.822255	5.355355	chr1	153686764	153686881	SINE|MIR|MIR3	+	chr1	153678687	153693992	NPR1|NM_000906.3	+	153678687,153680500,153681179,153681703,153682497,153683375,153683739,153684963,153685805,153686122,153686645,153687015,153687199,153687633,153688052,153688952,153689187,153689452,153689805,153690283,153693105,153693351	153679829,153680700,153681293,153681839,153682589,153683511,153683824,153685084,153685880,153686200,153686750,153687087,153687356,153687789,153688221,153689099,153689311,153689521,153689980,153690382,153693197,153693992	0.973684
thoracic_aorta_male_adult_37_years	chr12	54400400	54400434	54400422	-	High_confidence	9	9	47	1.745342	5.198102	chr12	54400188	54400532	LINE|L2|L2a	+	chr12	54397365	54400858	ITGA5|ENST00000552387.1	-	54397365,54398596,54399644,54399863	54397487,54398698,54399758,54400858	0.978723
thoracic_aorta_male_adult_37_years	chr11	123060124	123060229	123060124	-	High_confidence	45	50	357	13.257174	5.585446	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.532213
thoracic_aorta_male_adult_37_years	chr10	17617777	17617797	17617790	-	High_confidence	3	3	11	0.408484	3.121928	chr10	17617759	17617913	SINE|Alu|FRAM	-	chr10	17589031	17617377	HACD1|ENST00000361271.7	-	17589031,17594204,17599289,17603559,17603725,17603929,17617082	17590446,17594383,17599411,17603648,17603744,17604047,17617377	0.818182
thoracic_aorta_male_adult_37_years	chr1	166850222	166850268	166850222	+	RAMPAGE_only	6	6	43	1.596802	4.815459	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166848006	166856282	STRG.8318.3	+	166848006,166849787	166849733,166856282	1.000000
thoracic_aorta_male_adult_37_years	chr1	161206415	161206445	161206444	+	High_confidence	2	3	8	0.297080	2.807355	chr1	161206361	161206444	SINE|tRNA|LFSINE_Vert	+	chr1	161206408	161214296	STRG.8112.2	+	161206408,161209192,161209482,161209856,161210110,161210303,161210590,161212350,161213379,161213648,161213863,161214155	161206597,161209313,161209595,161209931,161210188,161210389,161210710,161212480,161213475,161213732,161213921,161214296	0.625000
thoracic_aorta_male_adult_37_years	chr8	39083050	39083066	39083065	+	RAMPAGE_only	12	12	24	0.891239	3.938722	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.875000
thoracic_aorta_male_adult_37_years	chr1	17624220	17624221	17624220	+	RAMPAGE_only	10	12	12	0.445619	3.084963	chr1	17624115	17624252	SINE|MIR|MIR3	+	chr1	17618315	17697868	ARHGEF10L|ENST00000375408.7	+	17618315,17619338,17621863,17622995,17624386,17625955,17627329,17632320,17634834,17637887,17638561,17640201,17648553,17654635,17655878,17656553,17664446,17687572,17695157,17696847	17618522,17619445,17621941,17623175,17624503,17626048,17627503,17632466,17635016,17638003,17638689,17640302,17648675,17654722,17656102,17656708,17664595,17687747,17695280,17697868	0.500000
thoracic_aorta_male_adult_37_years	chr2	38515496	38515515	38515514	-	High_confidence	4	4	11	0.408484	3.121928	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.727273
thoracic_aorta_male_adult_37_years	chr5	172958875	172958919	172958918	+	High_confidence	5	5	13	0.482754	2.625815	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.923077
thoracic_aorta_male_adult_37_years	chr7	102822458	102822461	102822458	-	RAMPAGE_only	7	7	17	0.631294	3.750000	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.588235
thoracic_aorta_male_adult_37_years	chr2	218398232	218398239	218398232	+	High_confidence	6	6	10	0.371349	3.321928	chr2	218398216	218398343	SINE|MIR|MIRb	+	chr2	218398337	218405941	CTDSP1|NM_001206878.1	+	218398337,218401563,218402113,218402348,218403034,218403231,218404296	218398479,218401712,218402215,218402405,218403127,218403417,218405941	0.800000
thoracic_aorta_male_adult_37_years	chr6	144533090	144533113	144533105	+	RAMPAGE_only	10	10	34	1.262588	4.663910	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.794118
thoracic_aorta_male_adult_37_years	chr2	240022172	240022244	240022172	-	RAMPAGE_only	15	15	82	3.045065	3.989221	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.951220
thoracic_aorta_male_adult_37_years	chr3	194486602	194486632	194486602	-	High_confidence	3	3	10	0.371349	2.947703	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.900000
thoracic_aorta_male_adult_37_years	chr21	46256892	46256905	46256892	-	High_confidence	4	4	13	0.482754	3.188722	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.769231
thoracic_aorta_male_adult_37_years	chr3	29924789	29924912	29924789	+	High_confidence	139	208	1151	42.742316	6.017460	chr3	29924556	29924859	SINE|Alu|AluSp	+	chr3	29924750	29991197	RBMS3|ENST00000473799.1	+	29924750,29936085,29944206,29988142,29991081	29925243,29936196,29944254,29988223,29991197	0.984361
thoracic_aorta_male_adult_37_years	chr17	81845356	81845368	81845356	-	High_confidence	3	3	8	0.297080	2.521641	chr17	81845321	81845418	SINE|Alu|AluJo	+	chr17	81843491	81845456	P4HB|ENST00000473021.1	-	81843491,81845143	81844092,81845456	0.875000
thoracic_aorta_male_adult_37_years	chr1	19344388	19344429	19344388	-	RAMPAGE_only	16	17	63	2.339501	5.110650	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.873016
thoracic_aorta_male_adult_37_years	chr13	110057239	110057310	110057241	-	High_confidence	28	49	217	8.058282	6.163135	chr13	110056667	110057319	LTR|ERV1|LTR58	+	chr13	110036196	110057286	AL355974.2|ENST00000617298.1	-	110036196,110057125	110036971,110057286	0.741935
thoracic_aorta_male_adult_37_years	chr11	119046587	119046643	119046587	-	RAMPAGE_only	6	12	61	2.265231	4.343070	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119044231	119048825	STRG.89913.5	-	119044231,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713	119045654,119045834,119046467,119046802,119047818,119048080,119048370,119048563,119048825	1.000000
thoracic_aorta_male_adult_37_years	chr3	152267426	152267475	152267426	-	RAMPAGE_only	4	5	46	1.708207	4.544876	chr3	152267213	152267496	LINE|L2|L2c	+	chr3	152262615	152269555	MBNL1-AS1|ENST00000608395.1	-	152262615,152269427	152269072,152269555	0.934783
thoracic_aorta_male_adult_37_years	chr2	201169722	201169723	201169722	+	RAMPAGE_only	5	5	7	0.259945	2.521641	chr2	201168284	201170266	LINE|L1|L1P3	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	1.000000
thoracic_aorta_male_adult_37_years	chrX	103627070	103627090	103627089	+	RAMPAGE_only	11	13	30	1.114048	4.456565	chrX	103626903	103627134	SINE|MIR|MIR	-	chrX	103607970	103629690	TCEAL3|ENST00000477014.1	+	103607970,103608603,103610510,103625317,103627040,103628405,103629493	103608058,103608673,103610607,103625435,103627154,103628793,103629690	0.966667
thoracic_aorta_male_adult_37_years	chr19	16081424	16081454	16081453	+	High_confidence	4	4	13	0.482754	3.251629	chr19	16081397	16081692	SINE|Alu|AluSc	-	chr19	16081722	16093581	TPM4|ENST00000592138.5	+	16081722,16086422,16088026,16089044,16093535	16082046,16086540,16088097,16089120,16093581	0.923077
thoracic_aorta_male_adult_37_years	chr12	45270487	45270503	45270487	+	RAMPAGE_only	1	1	7	0.259945	2.584963	chr12	45270445	45270560	LINE|L2|L2c	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.857143
thoracic_aorta_male_adult_37_years	chr3	193614854	193614861	193614860	+	High_confidence	7	7	12	0.445619	3.084963	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.916667
thoracic_aorta_male_adult_37_years	chr8	30812418	30812454	30812453	-	High_confidence	8	8	37	1.373993	4.343289	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.945946
thoracic_aorta_male_adult_37_years	chr12	103777101	103777289	103777288	-	RAMPAGE_only	37	37	363	13.479983	3.815012	chr12	103777216	103777295	DNA|TcMar-Tigger|Tigger19b	+	chr12	103772302	103841197	NT5DC3|NM_001031701.2	-	103772302,103780299,103785334,103787440,103788837,103793163,103793409,103793936,103796893,103798586,103806321,103806854,103814936,103840948	103778081,103780364,103785475,103787527,103788919,103793265,103793512,103793997,103797031,103798677,103806377,103806929,103815121,103841197	0.997245
thoracic_aorta_male_adult_37_years	chr1	175177611	175177663	175177611	-	RAMPAGE_only	8	8	48	1.782477	4.053509	chr1	175177563	175177679	SINE|MIR|MIRc	+	chr1	175156986	175166741	KIAA0040|ENST00000619513.1	-	175156986,175166561	175161146,175166741	0.979167
thoracic_aorta_male_adult_37_years	chr12	27030070	27030091	27030070	+	High_confidence	3	3	8	0.297080	3.000000	chr12	27029851	27030119	LINE|L1|L1MDa	+	chr12	27030259	27030673	MED21|ENST00000621885.1	+	27030259	27030673	0.875000
thoracic_aorta_male_adult_37_years	chr10	51669207	51669286	51669207	+	RAMPAGE_only	9	10	40	1.485398	4.218469	chr10	51669149	51669503	LTR|ERVL-MaLR|MLT1B	-	chr10	51554385	51670555	STRG.80529.1	+	51554385,51595245	51595208,51670555	0.950000
thoracic_aorta_male_adult_37_years	chr16	27330079	27330180	27330079	+	RAMPAGE_only	8	9	34	1.262588	4.256149	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27313933	27363903	IL4R|ENST00000568746.5	+	27313933,27340185,27341069,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27314020,27340273,27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27363903	0.911765
thoracic_aorta_male_adult_37_years	chr19	39485793	39485794	39485793	+	High_confidence	7	7	9	0.334214	2.750000	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	0.888889
thoracic_aorta_male_adult_37_years	chr2	3536845	3536873	3536872	-	High_confidence	3	3	16	0.594159	3.773557	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.812500
thoracic_aorta_male_adult_37_years	chr8	30554340	30554392	30554391	+	RAMPAGE_only	7	7	19	0.705564	3.683542	chr8	30554375	30554467	DNA|hAT-Charlie|MER103C	+	chr8	30545199	30570757	STRG.66993.15	+	30545199,30569193	30569109,30570757	0.947368
thoracic_aorta_male_adult_37_years	chr16	15750486	15750487	15750486	-	RAMPAGE_only	8	8	9	0.334214	3.000000	chr16	15750469	15750508	LINE|Penelope|Penelope1_Vert	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.555556
thoracic_aorta_male_adult_37_years	chr17	20227559	20227611	20227588	+	RAMPAGE_only	4	5	22	0.816969	3.653757	chr17	20227633	20227880	SINE|Alu|AluSx1	+	chr17	20205795	20237148	SPECC1|ENST00000584527.1	+	20205795,20227412,20231757,20232199,20236859	20205912,20227620,20231831,20232451,20237148	0.818182
thoracic_aorta_male_adult_37_years	chr8	37331919	37331931	37331919	-	High_confidence	2	2	7	0.259945	2.584963	chr8	37331719	37332166	LTR|ERVL-MaLR|MLT1C	-	chr8	37329223	37331977	STRG.66936.1	-	37329223,37331672	37331166,37331977	0.571429
thoracic_aorta_male_adult_37_years	chr10	5768323	5768381	5768380	-	RAMPAGE_only	4	4	16	0.594159	3.577820	chr10	5768371	5769005	LINE|L1|L1MB3	+	chr10	5765228	5769389	GDI2|ENST00000479928.1	-	5765228,5766240,5768212	5766152,5766638,5769389	1.000000
thoracic_aorta_male_adult_37_years	chr8	19218232	19218234	19218233	-	RAMPAGE_only	15	26	29	1.076913	4.423252	chr8	19218068	19218426	LTR|ERVL-MaLR|THE1B	-	chr8	19181231	19185664	STRG.66367.13	-	19181231	19185664	0.655172
thoracic_aorta_male_adult_37_years	chr12	122218272	122218293	122218272	-	High_confidence	10	10	17	0.631294	3.625000	chr12	122218031	122218232	DNA|hAT-Charlie|MER58A	-	chr12	122208315	122218289	DIABLO|ENST00000439489.6	-	122208315,122209696,122216487,122216758,122218265	122208577,122209858,122216584,122216869,122218289	0.764706
thoracic_aorta_male_adult_37_years	chr10	45858478	45858517	45858516	-	RAMPAGE_only	5	5	18	0.668429	3.281036	chr10	45858310	45858520	LINE|L1|L1M3	-	chr10	45856604	45859575	STRG.80019.1	-	45856604	45859575	1.000000
thoracic_aorta_male_adult_37_years	chr11	70102983	70102984	70102983	+	High_confidence	7	7	10	0.371349	2.947703	chr11	70102819	70102987	SINE|MIR|MIRb	+	chr11	70103096	70132033	ANO1|ENST00000530480.5	+	70103096,70103998,70105733,70108352,70111125,70111706,70116457,70124349,70126060,70131918	70103164,70104150,70105788,70108404,70111191,70111762,70116499,70124414,70126195,70132033	0.700000
thoracic_aorta_male_adult_37_years	chr2	217815157	217815196	217815157	-	RAMPAGE_only	6	7	19	0.705564	3.947703	chr2	217815022	217815485	LTR|ERVL-MaLR|MLT1C	+	chr2	217813708	217885810	STRG.22865.13	-	217813708,217817689,217821739,217831454,217835090,217836014,217847509,217880897,217882345,217885034,217885743	217814998,217818759,217821938,217831547,217835166,217836211,217849087,217881014,217882411,217885164,217885810	0.631579
thoracic_aorta_male_adult_37_years	chr1	1655395	1655481	1655409	-	RAMPAGE_only	35	36	119	4.419058	6.242949	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635309	1658972	STRG.184.3	-	1635309,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652468,1655368,1657255,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657302,1657498,1658972	0.932773
thoracic_aorta_male_adult_37_years	chr1	6820197	6820198	6820197	+	RAMPAGE_only	9	11	11	0.408484	2.732159	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.636364
thoracic_aorta_male_adult_37_years	chr19	45424148	45424197	45424188	-	High_confidence	4	4	21	0.779834	4.201841	chr19	45424058	45424154	LINE|L2|L2b	-	chr19	45407332	45424365	ERCC1|ENST00000300853.7	-	45407332,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423780	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424365	1.000000
thoracic_aorta_male_adult_37_years	chr2	201164118	201164258	201164257	+	RAMPAGE_only	10	11	45	1.671072	4.651379	chr2	201163983	201164293	SINE|Alu|AluSx1	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	0.933333
thoracic_aorta_male_adult_37_years	chr15	90467553	90467576	90467553	+	RAMPAGE_only	10	10	18	0.668429	3.852169	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.722222
thoracic_aorta_male_adult_37_years	chr14	68882879	68883044	68882879	-	High_confidence	107	115	1126	41.813942	6.410633	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.948490
thoracic_aorta_male_adult_37_years	chr11	114295311	114295370	114295336	+	RAMPAGE_only	6	9	23	0.854104	4.175736	chr11	114294850	114295386	LTR|ERV1|LTR35A	-	chr11	114059592	114312515	STRG.89637.1	+	114059592,114063210,114156336,114186951,114242166,114247197,114250325,114293681	114061561,114064568,114156434,114187038,114242337,114247365,114293447,114312515	1.000000
thoracic_aorta_male_adult_37_years	chr2	36513561	36513757	36513735	+	High_confidence	26	41	217	8.058282	5.531129	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.912442
thoracic_aorta_male_adult_37_years	chrX	109689231	109689326	109689325	-	RAMPAGE_only	6	7	50	1.856747	4.765533	chrX	109688804	109689935	LINE|L2|L2a	+	chrX	109641336	109701896	STRG.139681.4	-	109641336,109659353,109661530,109663210,109665419,109668100,109669033,109674401,109677987,109678264,109680997,109681265,109682718,109683135	109644186,109659511,109661645,109663402,109665494,109668273,109669173,109674473,109678111,109678415,109681136,109681375,109682896,109701896	1.000000
thoracic_aorta_male_adult_37_years	chr10	103605862	103605898	103605862	-	RAMPAGE_only	3	3	11	0.408484	3.321928	chr10	103605815	103605885	LINE|CR1|L3	+	chr10	103593940	103661762	STRG.82906.5	-	103593940,103597729,103611580,103612852,103617196,103622469,103627088,103660982	103597558,103605917,103611630,103613190,103617314,103622553,103627202,103661762	0.909091
thoracic_aorta_male_adult_37_years	chr11	73272247	73272261	73272247	+	High_confidence	4	4	9	0.334214	2.500000	chr11	73272218	73272327	SINE|MIR|MIRc	+	chr11	73272201	73298617	P2RY6|ENST00000393590.2	+	73272201,73296484	73272466,73298617	0.666667
thoracic_aorta_male_adult_37_years	chr9	68975836	68975855	68975842	-	High_confidence	18	18	58	2.153827	4.976548	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68971716	68975837	STRG.73614.1	-	68971716,68975663	68972641,68975837	0.586207
thoracic_aorta_male_adult_37_years	chr6	30196521	30196538	30196521	-	RAMPAGE_only	3	4	10	0.371349	2.947703	chr6	30196338	30196501	SINE|MIR|MIRc	-	chr6	30184454	30190394	TRIM26|ENST00000480999.1	-	30184454,30189166,30189417	30186558,30189199,30190394	0.600000
thoracic_aorta_male_adult_37_years	chr5	168669784	168669804	168669803	-	RAMPAGE_only	5	5	9	0.334214	3.000000	chr5	168669607	168669760	SINE|MIR|MIRc	-	chr5	168661732	168883338	SLIT3|ENST00000404867.7	-	168661732,168669782,168671197,168673176,168683965,168685686,168686978,168692606,168696291,168700581,168707975,168710894,168712282,168722255,168722932,168724415,168748301,168749471,168752954,168753863,168760861,168762538,168772780,168774234,168785906,168789559,168795506,168806445,168817299,168823259,168844583,168883264	168666689,168669991,168671483,168673331,168684096,168685927,168687116,168692700,168696431,168700679,168708121,168711058,168712354,168722327,168723004,168724484,168748434,168749635,168753098,168754007,168760936,168762689,168772944,168774378,168785978,168789631,168795578,168806587,168817463,168823331,168844655,168883338	0.888889
thoracic_aorta_male_adult_37_years	chr14	50756874	50756943	50756942	-	RAMPAGE_only	9	9	47	1.745342	4.580665	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
thoracic_aorta_male_adult_37_years	chr17	40456971	40457378	40456971	+	RAMPAGE_only	78	83	539	20.015733	6.597698	chr17	40456908	40456980	LINE|L2|L2b	-	chr17	40443460	40457731	IGFBP4|ENST00000269593.4	+	40443460,40452984,40453927,40456448	40444084,40453142,40454062,40457731	0.990724
thoracic_aorta_male_adult_37_years	chr8	53523624	53523662	53523624	-	High_confidence	3	3	14	0.519889	3.546594	chr8	53523216	53523628	LTR|ERV1|HERVE_a-int	-	chr8	53511785	53523931	STRG.67356.2	-	53511785,53521018,53523328	53516954,53521379,53523931	0.857143
thoracic_aorta_male_adult_37_years	chr1	46193163	46193185	46193184	-	High_confidence	4	4	10	0.371349	2.947703	chr1	46193040	46193162	SINE|MIR|MIR1_Amn	-	chr1	46190116	46193800	POMGNT1|ENST00000485714.1	-	46190116,46192307,46192517,46192899,46193173,46193304	46192223,46192436,46192590,46192958,46193215,46193800	0.800000
thoracic_aorta_male_adult_37_years	chr17	38810412	38810440	38810412	-	High_confidence	2	2	6	0.222810	2.584963	chr17	38810300	38810417	LINE|L2|L2b	+	chr17	38802839	38810595	CWC25|ENST00000619462.4	-	38802839,38806296,38806764,38809701,38810275,38810467	38802861,38806395,38806976,38809765,38810400,38810595	0.666667
thoracic_aorta_male_adult_37_years	chr19	16086202	16086211	16086210	+	RAMPAGE_only	4	4	11	0.408484	3.095795	chr19	16086198	16086359	SINE|Alu|AluSx1	+	chr19	16081722	16093581	TPM4|ENST00000592138.5	+	16081722,16086422,16088026,16089044,16093535	16082046,16086540,16088097,16089120,16093581	0.727273
thoracic_aorta_male_adult_37_years	chr8	108948816	108948817	108948816	-	RAMPAGE_only	11	11	13	0.482754	2.792481	chr8	108948659	108949043	LINE|L2|L2b	+	chr8	108908216	108918613	AC104248.1|ENST00000524134.1	-	108908216,108910625,108910921,108916046,108918536	108908271,108910734,108911121,108916091,108918613	0.615385
thoracic_aorta_male_adult_37_years	chr14	68883408	68883417	68883416	-	RAMPAGE_only	3	6	9	0.334214	2.500000	chr14	68883398	68883489	LINE|L1|L1ME4b	+	chr14	68874317	68888263	ACTN1|ENST00000556083.1	-	68874317,68877081,68878988,68879961,68880809,68882457,68882872,68884167,68884774,68885424	68875017,68877240,68879069,68880108,68880989,68882592,68883055,68884308,68884883,68888263	0.555556
thoracic_aorta_male_adult_37_years	chr6	31186092	31186135	31186092	-	RAMPAGE_only	6	6	26	0.965508	4.315824	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31173734	31177899	PSORS1C3|ENST00000412143.1	-	31173734,31174237,31177638	31174033,31174270,31177899	0.500000
thoracic_aorta_male_adult_37_years	chr6	3076891	3076899	3076898	+	High_confidence	5	5	9	0.334214	2.947703	chr6	3076851	3076944	SINE|tRNA|LFSINE_Vert	-	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.888889
thoracic_aorta_male_adult_37_years	chr12	7502517	7502566	7502543	-	High_confidence	14	22	130	4.827542	5.987726	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.969231
thoracic_aorta_male_adult_37_years	chr3	9818575	9818610	9818609	+	High_confidence	2	3	10	0.371349	3.321928	chr3	9818371	9818667	SINE|Alu|AluY	-	chr3	9818560	9835404	TTLL3|ENST00000473661.5	+	9818560,9825799,9826996,9827214,9828959,9833103,9834426,9834680	9820741,9825948,9827072,9827240,9829395,9833245,9834503,9835404	1.000000
thoracic_aorta_male_adult_37_years	chr5	154038408	154038409	154038408	-	High_confidence	15	15	20	0.742699	4.142664	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.600000
thoracic_aorta_male_adult_37_years	chr21	46256844	46256861	46256844	-	High_confidence	3	3	9	0.334214	2.947703	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	1.000000
thoracic_aorta_male_adult_37_years	chr3	146222383	146222400	146222383	-	High_confidence	2	2	7	0.259945	2.584963	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146206586	146222371	PLSCR4|ENST00000498625.1	-	146206586,146220814,146222064	146206761,146220925,146222371	0.714286
thoracic_aorta_male_adult_37_years	chr16	15006404	15006422	15006404	+	RAMPAGE_only	2	3	7	0.259945	2.584963	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	14997747	15038323	PDXDC1|ENST00000450288.3	+	14997747,14998339,15006393,15008778,15009680,15016128,15017119,15017320,15018839,15022703,15026642,15028877,15029950,15031734,15032860,15033277,15034285,15034456,15035448,15036015	14997826,14998405,15006583,15008847,15009759,15016213,15017168,15017422,15018965,15022754,15026706,15028966,15030056,15031906,15032979,15033399,15034378,15034553,15035553,15038323	0.714286
thoracic_aorta_male_adult_37_years	chr11	3380960	3380961	3380960	+	High_confidence	119	120	129	4.790407	6.283757	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3381548	3412259	STRG.84300.1	+	3381548,3383461,3384166,3397116,3401758,3402612,3402914,3403592,3404853,3406498,3407621,3408685	3381932,3383546,3395939,3397406,3401867,3402729,3402956,3403652,3404963,3406715,3407697,3412259	0.744186
thoracic_aorta_male_adult_37_years	chr16	86682398	86682428	86682398	+	RAMPAGE_only	9	9	21	0.779834	4.011365	chr16	86682238	86682640	LTR|ERVL-MaLR|MLT1C	+	chr16	86680735	86683127	STRG.114927.1	+	86680735	86683127	0.904762
thoracic_aorta_male_adult_37_years	chr4	1241400	1241438	1241435	-	High_confidence	3	3	10	0.371349	2.921928	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1241463	STRG.33811.4	-	1225437,1228198,1231107,1231634,1237474,1241324	1225566,1228343,1231303,1237264,1238337,1241463	1.000000
thoracic_aorta_male_adult_37_years	chr2	87469947	87469950	87469949	+	High_confidence	12	21	26	0.965508	4.084963	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87469949	87521413	CYTOR|ENST00000437561.1	+	87469949,87470149,87521206	87470042,87470304,87521413	0.538462
thoracic_aorta_male_adult_37_years	chr6	17779597	17779607	17779606	-	RAMPAGE_only	4	4	9	0.334214	2.500000	chr6	17779257	17779571	SINE|Alu|AluSp	-	chr6	17759253	17794697	KIF13A|ENST00000502297.5	-	17759253,17764154,17771113,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571	17760877,17764946,17771218,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794697	0.888889
thoracic_aorta_male_adult_37_years	chr9	77822975	77822998	77822997	-	RAMPAGE_only	10	10	20	0.742699	3.932138	chr9	77822933	77823238	SINE|Alu|AluY	-	chr9	77786312	77824196	STRG.74050.3	-	77786312,77797519,77815615,77822890	77794592,77797648,77815770,77824196	0.550000
thoracic_aorta_male_adult_37_years	chr1	201588542	201588556	201588555	+	RAMPAGE_only	3	3	7	0.259945	2.584963	chr1	201588344	201588641	SINE|Alu|AluJr	-	chr1	201622884	201623610	NAV1|ENST00000593583.1	+	201622884	201623610	0.857143
thoracic_aorta_male_adult_37_years	chr5	38881708	38881741	38881740	+	RAMPAGE_only	5	5	15	0.557024	3.456565	chr5	38881676	38881753	SINE|tRNA-Deu|AmnSINE2	+	chr5	38845998	38886739	OSMR|NM_001323504.1	+	38845998,38869031,38876200,38881592,38883826,38885348,38886038	38846387,38869117,38876373,38881764,38884111,38885484,38886739	0.933333
thoracic_aorta_male_adult_37_years	chr14	22909534	22909561	22909534	-	RAMPAGE_only	2	2	6	0.222810	2.584963	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22906027	22919110	RBM23|ENST00000554955.5	-	22906027,22908332,22909482,22911327,22918998	22906368,22908380,22909595,22911403,22919110	0.666667
thoracic_aorta_male_adult_37_years	chr3	134485443	134485496	134485443	-	High_confidence	11	13	76	2.822255	5.143768	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.710526
thoracic_aorta_male_adult_37_years	chr8	53523367	53523381	53523367	-	High_confidence	2	3	6	0.222810	2.584963	chr8	53523216	53523628	LTR|ERV1|HERVE_a-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
thoracic_aorta_male_adult_37_years	chrX	155612337	155612360	155612359	+	High_confidence	3	4	9	0.334214	2.725481	chrX	155612307	155612443	SINE|MIR|MIR3	-	chrX	155612564	155782459	SPRY3|NM_001304990.1	+	155612564,155767961,155773765	155612647,155768136,155782459	0.666667
thoracic_aorta_male_adult_37_years	chr11	65431101	65431277	65431244	+	RAMPAGE_only	37	40	243	9.023790	5.289363	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.995885
thoracic_aorta_male_adult_37_years	chr7	55538663	55538667	55538663	-	High_confidence	9	9	18	0.668429	2.586888	chr7	55538614	55538881	LINE|L1|L1ME4b	+	chr7	55471967	55538660	VOPP1|ENST00000625836.2	-	55471967,55492281,55497612,55521071,55538612	55473045,55492418,55497690,55521130,55538660	0.888889
thoracic_aorta_male_adult_37_years	chr11	114282944	114283241	114283145	+	RAMPAGE_only	35	36	235	8.726711	5.867783	chr11	114282911	114283527	LINE|L1|L1ME5	+	chr11	114059592	114312515	STRG.89637.1	+	114059592,114063210,114156336,114186951,114242166,114247197,114250325,114293681	114061561,114064568,114156434,114187038,114242337,114247365,114293447,114312515	0.991489
thoracic_aorta_male_adult_37_years	chr5	145440120	145440141	145440120	-	RAMPAGE_only	2	2	6	0.222810	2.584963	chr5	145440116	145440322	DNA|hAT-Tip100|MamTip2	-	chr5	145439598	145442136	STRG.47565.1	-	145439598	145442136	0.833333
thoracic_aorta_male_adult_37_years	chr2	215379728	215379736	215379735	-	RAMPAGE_only	4	4	10	0.371349	2.947703	chr2	215379709	215379995	SINE|Alu|AluJr	-	chr2	215375632	215381329	FN1|ENST00000474036.1	-	215375632,215376497,215378174,215379129,215380810	215375718,215376674,215378262,215379317,215381329	0.500000
thoracic_aorta_male_adult_37_years	chr1	182390018	182390057	182390018	-	High_confidence	4	4	19	0.705564	3.836592	chr1	182389985	182390241	SINE|Alu|AluSx	+	chr1	182382893	182390304	GLUL|ENST00000491322.1	-	182382893,182388571	182387292,182390304	0.947368
thoracic_aorta_male_adult_37_years	chr19	9140390	9140428	9140393	+	High_confidence	31	31	145	5.384566	6.150008	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.717241
thoracic_aorta_male_adult_37_years	chr4	15208451	15208499	15208498	-	RAMPAGE_only	3	4	9	0.334214	3.000000	chr4	15208482	15208827	LTR|ERVL|LTR79	+	chr4	15180137	15212729	STRG.34832.1	-	15180137,15191151	15191020,15212729	0.888889
thoracic_aorta_male_adult_37_years	chr16	15732756	15732783	15732771	-	RAMPAGE_only	8	8	19	0.705564	4.058814	chr16	15732761	15733017	SINE|MIR|MIRc	+	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.947368
thoracic_aorta_male_adult_37_years	chr1	236810548	236810564	236810557	+	RAMPAGE_only	2	2	7	0.259945	2.584963	chr1	236810602	236810781	SINE|MIR|MIR	+	chr1	236795614	236853088	MTR|ENST00000463959.1	+	236795614,236803427,236806143,236810502,236812737,236815603,236816448,236824118,236825337,236826828,236829188,236831965,236835546,236838413,236850343,236852520,236852947	236795737,236803642,236806233,236810595,236812844,236815663,236816543,236824219,236825399,236826896,236829268,236832078,236835687,236838599,236850523,236852637,236853088	0.714286
thoracic_aorta_male_adult_37_years	chr1	30738957	30739039	30738957	-	RAMPAGE_only	5	6	28	1.039778	3.958229	chr1	30738862	30738914	SINE|MIR|MIR	-	chr1	30732468	30757820	LAPTM5|ENST00000294507.3	-	30732468,30735172,30737603,30738939,30739808,30741639,30742455,30757658	30733917,30735265,30737699,30739062,30739937,30741716,30742549,30757820	0.892857
thoracic_aorta_male_adult_37_years	chr8	101202374	101202408	101202407	-	High_confidence	3	3	8	0.297080	2.807355	chr8	101202158	101202485	SINE|Alu|AluSg7	+	chr8	101198936	101201657	ZNF706|ENST00000519103.1	-	101198936,101199989,101201606	101199239,101200123,101201657	0.875000
thoracic_aorta_male_adult_37_years	chr4	99133709	99133721	99133720	+	RAMPAGE_only	5	5	11	0.408484	2.921928	chr4	99133675	99133771	LINE|L1|L1MA7	+	chr4	99088876	99206748	STRG.37567.1	+	99088876,99133554,99154553,99159420,99204356	99089284,99133805,99157579,99159622,99206748	0.727273
thoracic_aorta_male_adult_37_years	chr7	130900593	130900594	130900593	-	RAMPAGE_only	6	6	9	0.334214	2.725481	chr7	130900553	130900882	LINE|L2|L2b	+	chr7	130892515	130984109	STRG.64351.11	-	130892515,130924864,130984052	130924787,130945835,130984109	1.000000
thoracic_aorta_male_adult_37_years	chr20	49513094	49513095	49513094	-	RAMPAGE_only	4	7	7	0.259945	2.521641	chr20	49512857	49513046	SINE|MIR|MIRb	-	chr20	49503873	49568146	PTGIS|ENST00000244043.4	-	49503873,49511027,49513079,49514226,49524057,49539569,49544304,49547840,49550065,49568042	49508064,49511179,49513261,49514395,49524239,49539721,49544448,49548019,49550189,49568146	0.714286
thoracic_aorta_male_adult_37_years	chr3	33151983	33152296	33152240	-	RAMPAGE_only	20	22	360	13.368578	6.482551	chr3	33152146	33152430	SINE|Alu|AluSz	+	chr3	33150041	33219215	SUSD5|ENST00000309558.7	-	33150041,33174885,33207807,33213927,33218685	33154033,33175074,33207926,33214105,33219215	0.997222
thoracic_aorta_male_adult_37_years	chr3	195689341	195689361	195689360	+	High_confidence	5	6	12	0.445619	3.027169	chr3	195689376	195689522	LINE|L1|L1MC5a	+	chr3	195689424	195696554	MUC20-OT1|ENST00000626677.1	+	195689424,195696360	195689608,195696554	0.500000
thoracic_aorta_male_adult_37_years	chr11	19737513	19737551	19737513	+	RAMPAGE_only	18	19	89	3.305010	5.154113	chr11	19737526	19737782	SINE|MIR|MIR	+	chr11	19713596	20080184	STRG.85312.8	+	19713596,19832483,19842870,19868924,19879868,19892433,19933175,19939660,19946400,19948690,19984124,20035958,20043980,20044967,20048727,20049835,20051288,20055768,20068185,20068323,20077551,20077992,20080063	19777517,19832601,19842923,19868997,19880127,19892594,19934277,19939773,19946509,19949080,19984247,20036097,20044272,20045670,20049195,20049901,20054240,20062359,20068209,20068398,20077635,20078104,20080184	0.988764
thoracic_aorta_male_adult_37_years	chr18	36122228	36122251	36122242	-	High_confidence	9	9	26	0.965508	4.293661	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.923077
thoracic_aorta_male_adult_37_years	chr16	89904144	89904175	89904144	+	High_confidence	2	3	16	0.594159	3.456565	chr16	89904174	89904222	LINE|CR1|L3	+	chr16	89905008	89909174	TCF25|ENST00000563484.1	+	89905008,89906193,89907242,89908965	89905096,89906284,89907322,89909174	0.562500
thoracic_aorta_male_adult_37_years	chr19	10555125	10555148	10555125	-	RAMPAGE_only	12	13	29	1.076913	3.610577	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	0.965517
thoracic_aorta_male_adult_37_years	chrX	16712861	16712924	16712899	-	High_confidence	3	4	29	1.076913	4.060262	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.793103
thoracic_aorta_male_adult_37_years	chr4	2867814	2867851	2867850	+	High_confidence	14	14	59	2.190961	5.327724	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.983051
thoracic_aorta_male_adult_37_years	chr5	55851353	55851383	55851353	+	High_confidence	3	3	14	0.519889	3.093069	chr5	55851124	55851720	DNA|TcMar-Tigger|Tigger17a	-	chr5	55851378	55909141	IL31RA|NM_001297570.1	+	55851378,55859508,55868790,55872269,55883043,55889969,55896349,55899915,55906105,55907358,55908264	55851633,55859599,55868908,55872451,55883195,55890135,55896429,55900132,55906288,55907460,55909141	0.928571
thoracic_aorta_male_adult_37_years	chr3	188153294	188153319	188153294	+	High_confidence	2	2	8	0.297080	2.750000	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.875000
thoracic_aorta_male_adult_37_years	chr19	13037391	13037409	13037396	+	RAMPAGE_only	2	2	10	0.371349	3.169925	chr19	13037335	13037620	LINE|CR1|L3b	+	chr19	13024938	13094770	NFIX|ENST00000587260.1	+	13024938,13073046,13073421,13073905,13075534,13078612,13081679,13090298,13094634	13025552,13073109,13073496,13074026,13075671,13078735,13081855,13090390,13094770	0.700000
thoracic_aorta_male_adult_37_years	chr12	9104561	9104562	9104561	-	RAMPAGE_only	9	10	11	0.408484	3.459432	chr12	9104458	9104683	LINE|L2|L2a	-	chr12	9072432	9106296	A2M|ENST00000545828.1	-	9072432,9072652,9101549,9104238,9106235	9072486,9072721,9101674,9104400,9106296	0.545455
thoracic_aorta_male_adult_37_years	chr12	643627	643636	643627	-	High_confidence	13	30	56	2.079557	4.397015	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.553571
thoracic_aorta_male_adult_37_years	chr12	110440313	110440320	110440313	-	RAMPAGE_only	3	6	10	0.371349	3.169925	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.900000
thoracic_aorta_male_adult_37_years	chr1	150457343	150457409	150457343	+	RAMPAGE_only	2	2	19	0.705564	4.142664	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150364710	150473556	RPRD2|ENST00000369068.4	+	150364710,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150364919,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	1.000000
thoracic_aorta_male_adult_37_years	chr19	20423688	20423704	20423703	-	RAMPAGE_only	11	19	44	1.633937	4.646968	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.704545
thoracic_aorta_male_adult_37_years	chr6	2968840	2968846	2968840	-	RAMPAGE_only	5	6	14	0.519889	3.324863	chr6	2968783	2968841	LINE|L1|HAL1	-	chr6	2948162	2970743	SERPINB6|ENST00000644178.1	-	2948162,2948913,2953043,2954591,2955523,2959167,2966399	2948699,2949069,2953186,2954709,2955670,2959342,2970743	1.000000
thoracic_aorta_male_adult_37_years	chr1	3831051	3831057	3831051	-	High_confidence	2	2	7	0.259945	2.584963	chr1	3830948	3831012	LINE|L2|L2a	-	chr1	3829691	3831224	CEP104|ENST00000495701.1	-	3829691,3831045	3829997,3831224	0.571429
thoracic_aorta_male_adult_37_years	chr2	86482561	86482578	86482577	+	RAMPAGE_only	15	17	30	1.114048	4.615061	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.633333
thoracic_aorta_male_adult_37_years	chr1	236163668	236163669	236163668	+	RAMPAGE_only	7	7	7	0.259945	2.807355	chr1	236163473	236163830	LTR|ERVL-MaLR|THE1A	+	chr1	236168700	236208482	GPR137B|ENST00000454895.2	+	236168700,236178413,236179878,236183777,236205125,236208060	236168755,236178636,236180028,236183906,236205250,236208482	0.571429
thoracic_aorta_male_adult_37_years	chr11	19745734	19745750	19745734	+	RAMPAGE_only	3	3	13	0.482754	3.418296	chr11	19745581	19745917	DNA|hAT-Charlie|MER1B	-	chr11	19713596	20080184	STRG.85312.8	+	19713596,19832483,19842870,19868924,19879868,19892433,19933175,19939660,19946400,19948690,19984124,20035958,20043980,20044967,20048727,20049835,20051288,20055768,20068185,20068323,20077551,20077992,20080063	19777517,19832601,19842923,19868997,19880127,19892594,19934277,19939773,19946509,19949080,19984247,20036097,20044272,20045670,20049195,20049901,20054240,20062359,20068209,20068398,20077635,20078104,20080184	0.923077
thoracic_aorta_male_adult_37_years	chr11	122066267	122066320	122066319	-	RAMPAGE_only	4	4	10	0.371349	3.121928	chr11	122066057	122066503	LTR|ERVL-MaLR|MLT1C	-	chr11	122060499	122084961	STRG.89962.2	-	122060499	122084961	1.000000
thoracic_aorta_male_adult_37_years	chr7	74045927	74046208	74045927	+	High_confidence	36	39	527	19.570113	7.363300	chr7	74045766	74046047	SINE|Alu|AluSp	+	chr7	74046658	74052236	ELN|ENST00000493839.1	+	74046658,74047674,74048141,74048502,74051749	74046767,74047716,74048201,74048556,74052236	0.508539
thoracic_aorta_male_adult_37_years	chr17	59619888	59619923	59619894	+	High_confidence	881	1037	2689	99.855853	5.034745	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.966902
thoracic_aorta_male_adult_37_years	chr5	55982724	55982800	55982799	-	High_confidence	13	14	35	1.299723	4.680758	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.885714
thoracic_aorta_male_adult_37_years	chr19	52616844	52616864	52616844	-	RAMPAGE_only	7	7	18	0.668429	3.969816	chr19	52616561	52616863	SINE|Alu|AluSp	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	0.944444
thoracic_aorta_male_adult_37_years	chrX	5726116	5726194	5726116	-	High_confidence	23	24	94	3.490684	5.160698	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719438	5726305	STRG.135493.1	-	5719438,5725929	5719872,5726305	0.914894
thoracic_aorta_male_adult_37_years	chr2	151481730	151481731	151481730	+	RAMPAGE_only	8	8	8	0.297080	2.500000	chr2	151481753	151481960	DNA|hAT-Charlie|MER1B	+	chr2	151409940	151482172	RIF1|ENST00000243326.9	+	151409940,151411259,151414822,151416560,151416806,151420189,151422949,151428783,151433076,151435462,151436826,151437240,151438683,151440026,151441904,151443258,151443528,151445337,151446425,151451605,151454894,151456577,151457760,151458810,151459999,151461137,151462241,151462411,151462883,151467999,151468473,151468640,151469710,151473963,151474856	151410527,151411338,151414919,151416688,151416901,151420379,151423042,151428922,151433228,151435580,151437003,151437351,151438746,151440127,151441991,151443329,151443709,151445445,151446575,151451705,151455159,151456620,151457963,151458910,151460119,151461289,151462322,151462466,151466120,151468146,151468551,151468756,151469864,151474072,151482172	0.875000
thoracic_aorta_male_adult_37_years	chrX	136688059	136688083	136688070	-	RAMPAGE_only	4	4	10	0.371349	2.646439	chrX	136688026	136688218	LINE|L1|L1ME1	+	chrX	136665546	136767343	ARHGEF6|ENST00000370620.5	-	136665546,136669481,136672019,136675006,136676623,136677935,136679534,136680730,136681889,136682757,136685676,136687931,136690609,136706907,136708674,136713275,136732101,136743584,136745222,136747507,136767143	136668169,136669536,136672119,136675096,136676717,136677956,136679660,136680876,136681968,136682844,136685823,136687991,136690748,136707030,136708770,136713370,136732172,136743786,136745347,136747592,136767343	1.000000
thoracic_aorta_male_adult_37_years	chr4	86453184	86453232	86453231	-	High_confidence	27	28	220	8.169687	5.040828	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016153	86453225	MAPK10|ENST00000639972.2	-	86016153,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194308,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453225	0.909091
thoracic_aorta_male_adult_37_years	chr8	69625527	69625533	69625532	+	RAMPAGE_only	3	4	9	0.334214	2.500000	chr8	69625370	69627029	LTR|ERV1|LTR12C	-	chr8	69617456	69658892	STRG.68033.5	+	69617456,69626260,69627771,69628170,69629503,69638501,69638734,69640807,69658504	69626143,69627306,69627866,69628236,69629679,69638644,69638858,69640841,69658892	0.888889
thoracic_aorta_male_adult_37_years	chr4	88595597	88595607	88595597	+	RAMPAGE_only	3	3	14	0.519889	2.692381	chr4	88595552	88595664	SINE|MIR|MIR3	+	chr4	88593377	88653088	HERC3|ENST00000452979.5	+	88593377,88595556,88605794,88649839,88652011,88652868	88593494,88595614,88606049,88649999,88652088,88653088	1.000000
thoracic_aorta_male_adult_37_years	chr4	8381736	8381737	8381736	-	RAMPAGE_only	6	6	7	0.259945	2.584963	chr4	8381683	8381862	SINE|MIR|MIR1_Amn	-	chr4	8374467	8415855	ACOX3|ENST00000510365.5	-	8374467,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765	8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415855	0.857143
thoracic_aorta_male_adult_37_years	chr15	75347037	75347053	75347037	+	High_confidence	4	4	18	0.668429	3.852169	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.555556
thoracic_aorta_male_adult_37_years	chr3	52518337	52518348	52518337	+	High_confidence	3	3	16	0.594159	3.625000	chr3	52518378	52518454	SINE|MIR|MIR3	+	chr3	52518800	52523476	STAB1|ENST00000481626.5	+	52518800,52519263,52519943,52520399,52520641,52521360,52521595,52521843,52522036,52522329,52522554,52522774,52523024,52523221,52523426	52518869,52519564,52520290,52520549,52521005,52521510,52521700,52521951,52522230,52522474,52522688,52522940,52523134,52523341,52523476	0.937500
thoracic_aorta_male_adult_37_years	chr2	113710102	113710125	113710102	-	RAMPAGE_only	8	8	19	0.705564	4.037401	chr2	113709808	113710102	SINE|Alu|AluJo	-	chr2	113706484	113719711	STRG.18120.14	-	113706484,113719153	113715195,113719711	1.000000
thoracic_aorta_male_adult_37_years	chr21	29077477	29077501	29077486	+	High_confidence	7	7	27	1.002643	4.209867	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.518519
thoracic_aorta_male_adult_37_years	chr10	95484432	95484490	95484432	-	RAMPAGE_only	3	3	15	0.557024	2.835238	chr10	95484343	95484548	DNA|hAT-Charlie|MER102a	-	chr10	95399016	95561355	STRG.82468.14	-	95399016,95406117,95410632,95414493,95421960,95422189,95432447,95437489,95441125,95482433,95561319	95399189,95406147,95410777,95416185,95422073,95422216,95432576,95437555,95441180,95491120,95561355	0.933333
thoracic_aorta_male_adult_37_years	chr11	3397235	3397243	3397235	+	RAMPAGE_only	2	3	9	0.334214	2.725481	chr11	3397121	3398090	Retroposon|SVA|SVA_E	+	chr11	3381548	3412259	STRG.84300.1	+	3381548,3383461,3384166,3397116,3401758,3402612,3402914,3403592,3404853,3406498,3407621,3408685	3381932,3383546,3395939,3397406,3401867,3402729,3402956,3403652,3404963,3406715,3407697,3412259	0.666667
thoracic_aorta_male_adult_37_years	chr1	201863204	201863246	201863204	+	RAMPAGE_only	2	3	10	0.371349	2.947703	chr1	201863068	201863363	SINE|Alu|AluSx1	+	chr1	201829159	201884294	IPO9|NM_018085.4	+	201829159,201847278,201847551,201848392,201852103,201853010,201854594,201854822,201855123,201855782,201857095,201858446,201858854,201863447,201866732,201868647,201869589,201870582,201871160,201872827,201874249,201874831,201875151,201875943	201829372,201847340,201847638,201848594,201852192,201853097,201854714,201854923,201855182,201855934,201857194,201858553,201858994,201863607,201866959,201868796,201869718,201870858,201871327,201872961,201874372,201874936,201875228,201884294	0.600000
thoracic_aorta_male_adult_37_years	chr7	64992037	64992070	64992069	-	RAMPAGE_only	5	5	14	0.519889	2.623517	chr7	64990915	64999343	LTR|ERV1|HERV3-int	-	chr7	64990808	65006653	ERV3-1|ENST00000394323.2	-	64990808,65006540	64993414,65006653	0.928571
thoracic_aorta_male_adult_37_years	chr9	39809852	39809870	39809858	-	High_confidence	3	5	14	0.519889	3.546594	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807380	39810058	GLIDR|ENST00000618092.2	-	39807380,39809730	39809633,39810058	0.500000
thoracic_aorta_male_adult_37_years	chr19	45424367	45424391	45424382	-	High_confidence	8	14	28	1.039778	4.566109	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	1.000000
thoracic_aorta_male_adult_37_years	chr11	19768794	19768831	19768830	+	RAMPAGE_only	6	6	18	0.668429	3.044110	chr11	19768674	19768885	SINE|MIR|MIR	+	chr11	19713596	20080184	STRG.85312.8	+	19713596,19832483,19842870,19868924,19879868,19892433,19933175,19939660,19946400,19948690,19984124,20035958,20043980,20044967,20048727,20049835,20051288,20055768,20068185,20068323,20077551,20077992,20080063	19777517,19832601,19842923,19868997,19880127,19892594,19934277,19939773,19946509,19949080,19984247,20036097,20044272,20045670,20049195,20049901,20054240,20062359,20068209,20068398,20077635,20078104,20080184	1.000000
thoracic_aorta_male_adult_37_years	chr1	183590910	183590926	183590910	-	High_confidence	3	3	11	0.408484	3.277613	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.636364
thoracic_aorta_male_adult_37_years	chr12	54400482	54400593	54400515	-	High_confidence	15	16	78	2.896525	4.860001	chr12	54400188	54400532	LINE|L2|L2a	+	chr12	54397365	54400858	ITGA5|ENST00000552387.1	-	54397365,54398596,54399644,54399863	54397487,54398698,54399758,54400858	0.974359
thoracic_aorta_male_adult_37_years	chr11	64242479	64242547	64242546	+	High_confidence	12	12	45	1.671072	4.924969	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.977778
thoracic_aorta_male_adult_37_years	chr11	123061128	123061328	123061256	-	High_confidence	43	46	409	15.188190	5.686184	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.960880
thoracic_aorta_male_adult_37_years	chr3	193614814	193614824	193614814	+	High_confidence	4	4	10	0.371349	3.169925	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.700000
thoracic_aorta_male_adult_37_years	chr12	883795	883830	883829	+	RAMPAGE_only	5	5	26	0.965508	4.238901	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	753055	907956	STRG.90704.2	+	753055,813641,827041,830002,857160,859244,861012,862082,871264,878211,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846	754324,813814,827262,830160,857249,859464,861343,862270,871348,878361,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,907956	1.000000
thoracic_aorta_male_adult_37_years	chr6	31587195	31587202	31587201	+	High_confidence	8	8	15	0.557024	3.906891	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	1.000000
thoracic_aorta_male_adult_37_years	chr7	149558836	149558858	149558857	-	RAMPAGE_only	3	3	8	0.297080	2.750000	chr7	149558782	149558919	SINE|MIR|MIR	+	chr7	149549082	149624628	ZNF767P|ENST00000486492.5	-	149549082,149550867,149551654,149552800,149558607,149619923,149621045,149621259,149624541	149549374,149550946,149551826,149553013,149558839,149620037,149621172,149621559,149624628	0.750000
thoracic_aorta_male_adult_37_years	chr7	74035307	74035313	74035307	+	RAMPAGE_only	17	17	33	1.225453	4.562500	chr7	74035255	74035319	DNA|TcMar-Mariner|MADE1	-	chr7	74028174	74043168	ELN|ENST00000416107.5	+	74028174,74035363,74036554,74037706,74041215,74042613,74042983,74043117	74028269,74035688,74036584,74037739,74041251,74042706,74043034,74043168	0.606061
thoracic_aorta_male_adult_37_years	chr17	28637853	28637864	28637853	-	RAMPAGE_only	2	2	6	0.222810	2.584963	chr17	28637660	28637803	SINE|Alu|AluSx3	-	chr17	28614439	28645131	KIAA0100|ENST00000528896.6	-	28614439,28615663,28616095,28616378,28616617,28616888,28617231,28618790,28619653,28619859,28620508,28620987,28621398,28623759,28624232,28628264,28631478,28631819,28632048,28632941,28633282,28633548,28633894,28634516,28636964,28637835,28638251,28638523,28639314,28639574,28639900,28640559,28641888,28642274,28642868,28643163,28643609,28644057,28644988	28615246,28615798,28616197,28616509,28616753,28616999,28617318,28618971,28619775,28620015,28620630,28621170,28621498,28623966,28624390,28628559,28631681,28631919,28632239,28633162,28633401,28633751,28634086,28635609,28637170,28638094,28638415,28638642,28639460,28639642,28640025,28640683,28642078,28642335,28642987,28643311,28643659,28644187,28645131	1.000000
thoracic_aorta_male_adult_37_years	chr4	55411362	55411363	55411362	+	RAMPAGE_only	11	11	17	0.631294	3.263933	chr4	55411250	55411434	DNA|TcMar-Tigger|Tigger4a	+	chr4	55403242	55412156	TMEM165|ENST00000502797.1	+	55403242,55411613	55403338,55412156	0.705882
thoracic_aorta_male_adult_37_years	chr6	143849991	143849992	143849991	+	RAMPAGE_only	11	11	13	0.482754	3.584963	chr6	143849659	143850038	LTR|ERVL-MaLR|MLT1C	-	chr6	143854869	143863812	STRG.56055.3	+	143854869,143857751,143862103,143862843,143863085,143863416	143857583,143860553,143862243,143862896,143863286,143863812	0.615385
thoracic_aorta_male_adult_37_years	chr12	9407491	9407507	9407506	-	High_confidence	5	5	9	0.334214	2.750000	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9402528	9407555	STRG.91362.1	-	9402528,9407307	9402556,9407555	0.555556
thoracic_aorta_male_adult_37_years	chr9	128473696	128473701	128473696	+	RAMPAGE_only	5	5	11	0.408484	3.121928	chr9	128473736	128473912	SINE|MIR|MIRb	+	chr9	128460558	128500255	ODF2|ENST00000444119.6	+	128460558,128460941,128469182,128471307,128472912,128473609,128481579,128482815,128483937,128484700,128485364,128487889,128492425,128492700,128494509,128496040,128498412,128499000,128500066	128460666,128461010,128469353,128471468,128473042,128473741,128481651,128482887,128484054,128484886,128485474,128488025,128492536,128492805,128494668,128496141,128498575,128499126,128500255	0.909091
thoracic_aorta_male_adult_37_years	chr8	118042605	118042638	118042605	-	RAMPAGE_only	8	9	28	1.039778	4.209867	chr8	118042287	118042598	SINE|Alu|AluSz	-	chr8	117997316	118079630	STRG.69914.7	-	117997316,118032172	118032099,118079630	0.928571
thoracic_aorta_male_adult_37_years	chr1	226871351	226871366	226871351	+	High_confidence	2	2	7	0.259945	2.521641	chr1	226871299	226871488	SINE|MIR|MIR3	-	chr1	226871267	226896098	PSEN2|ENST00000366782.5	+	226871267,226875364,226880468,226881887,226883704,226885537,226888090,226888828,226890034,226891277,226891742,226894006,226895423	226871404,226875550,226880724,226882048,226883919,226885679,226888158,226889049,226890133,226891361,226891844,226894125,226896098	0.714286
thoracic_aorta_male_adult_37_years	chr11	19761860	19761889	19761888	+	RAMPAGE_only	6	9	13	0.482754	3.085055	chr11	19761759	19761960	LINE|L2|L2a	+	chr11	19713596	20080184	STRG.85312.8	+	19713596,19832483,19842870,19868924,19879868,19892433,19933175,19939660,19946400,19948690,19984124,20035958,20043980,20044967,20048727,20049835,20051288,20055768,20068185,20068323,20077551,20077992,20080063	19777517,19832601,19842923,19868997,19880127,19892594,19934277,19939773,19946509,19949080,19984247,20036097,20044272,20045670,20049195,20049901,20054240,20062359,20068209,20068398,20077635,20078104,20080184	1.000000
thoracic_aorta_male_adult_37_years	chr12	91179462	91179526	91179462	-	High_confidence	4450	4966	12422	461.290223	7.554469	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.524392
thoracic_aorta_male_adult_37_years	chr11	65016272	65016273	65016272	+	RAMPAGE_only	79	95	96	3.564954	5.813247	chr11	65016219	65016460	LINE|L2|L2a	-	chr11	65497687	65506431	MALAT1|ENST00000619449.2	+	65497687,65498681,65498968,65506259	65497865,65498734,65503905,65506431	0.968750
thoracic_aorta_male_adult_37_years	chr20	62286393	62286413	62286393	+	RAMPAGE_only	4	4	12	0.445619	2.663533	chr20	62286166	62286468	SINE|Alu|AluSx1	+	chr20	62273308	62296213	STRG.130517.2	+	62273308,62279156,62281057,62281789,62284045,62285535,62289206,62291702,62293784	62273406,62279349,62281165,62281879,62284169,62286711,62289330,62291793,62296213	0.916667
thoracic_aorta_male_adult_37_years	chr17	7313835	7313844	7313835	-	High_confidence	2	2	8	0.297080	2.521641	chr17	7313740	7313844	LINE|L2|L2c	+	chr17	7312658	7313757	GPS2|ENST00000573807.5	-	7312658,7313028,7313211	7312839,7313124,7313757	0.875000
thoracic_aorta_male_adult_37_years	chr18	42027515	42027539	42027530	+	RAMPAGE_only	3	4	13	0.482754	3.180833	chr18	42027565	42027649	DNA|hAT-Charlie|MER58B	+	chr18	42025781	42037817	PIK3C3|ENST00000590013.2	+	42025781,42027442,42029324,42033825,42037691	42025939,42027548,42029441,42033957,42037817	1.000000
thoracic_aorta_male_adult_37_years	chr12	19775452	19775483	19775452	+	High_confidence	73	81	129	4.790407	6.413910	chr12	19775357	19775902	LINE|L1|L1PBa1	-	chr12	19775450	20009937	AC024901.1|ENST00000535764.1	+	19775450,19923197,19944378,20008644,20009720	19775603,19923256,19944544,20008767,20009937	0.581395
thoracic_aorta_male_adult_37_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	37	39	78	2.896525	4.103096	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.820513
thoracic_aorta_male_adult_37_years	chr15	92939396	92939453	92939396	+	High_confidence	3	3	21	0.779834	3.884184	chr15	92939359	92939489	DNA|hAT-Charlie|MER5A	+	chr15	92939653	92949228	CHD2|ENST00000637613.1	+	92939653,92941821,92942842,92944414,92945820,92946037,92946247,92948951	92939718,92941955,92943068,92944515,92945865,92946082,92946340,92949228	0.809524
thoracic_aorta_male_adult_37_years	chr1	196404228	196404273	196404272	-	High_confidence	46	67	208	7.724067	5.865586	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196315411	196404253	STRG.9505.2	-	196315411,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196316026,196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404253	0.774038
thoracic_aorta_male_adult_37_years	chr2	189782426	189782433	189782426	-	High_confidence	6	6	10	0.371349	3.121928	chr2	189782212	189782378	LINE|L1|L1MB3	-	chr2	189770323	189783382	ORMDL1|ENST00000325795.7	-	189770323,189775564,189782421	189771902,189775716,189783382	0.800000
thoracic_aorta_male_adult_37_years	chr8	118036712	118036914	118036839	-	RAMPAGE_only	26	28	130	4.827542	5.676764	chr8	118036811	118036875	LINE|L2|L2a	+	chr8	117997316	118079630	STRG.69914.7	-	117997316,118032172	118032099,118079630	0.984615
thoracic_aorta_male_adult_37_years	chr10	95493199	95493288	95493263	-	RAMPAGE_only	21	29	86	3.193605	5.283198	chr10	95493013	95493319	SINE|Alu|AluSg	+	chr10	95399016	95561355	STRG.82468.13	-	95399016,95406117,95410632,95414493,95415468,95421960,95422189,95432447,95437489,95441125,95491034,95561319	95399189,95406147,95410777,95414862,95416185,95422073,95422216,95432576,95437555,95441180,95491120,95561355	0.825581
thoracic_aorta_male_adult_37_years	chr14	102947722	102947755	102947722	-	RAMPAGE_only	4	5	23	0.854104	4.262692	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102944042	102968532	CDC42BPB|ENST00000559043.1	-	102944042,102945661,102946467,102947720,102949764,102950465,102952497,102954601,102959630,102963060,102964501,102966281,102967045,102968252,102968471	102944487,102945724,102946684,102947802,102949904,102950602,102952603,102954688,102959710,102963155,102964650,102966387,102967170,102968358,102968532	0.652174
thoracic_aorta_male_adult_37_years	chr5	81558501	81558567	81558501	-	High_confidence	5	5	39	1.448263	3.698089	chr5	81558452	81558522	LINE|L2|L2a	+	chr5	81555819	81559462	STRG.44212.1	-	81555819	81559462	0.974359
thoracic_aorta_male_adult_37_years	chr2	45192664	45192666	45192665	-	RAMPAGE_only	10	14	17	0.631294	3.969816	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	0.941176
thoracic_aorta_male_adult_37_years	chr14	103931833	103931834	103931833	+	RAMPAGE_only	6	6	9	0.334214	3.000000	chr14	103931646	103932201	LTR|ERVL-MaLR|MLT1E2	+	chr14	103928479	104052667	TDRD9|NM_153046.2	+	103928479,103955663,103963078,103965332,103966708,103970540,103975388,103986216,103991159,103994331,103994518,103995749,103998623,104004237,104005273,104006388,104006645,104006781,104007159,104008412,104014724,104015980,104018091,104022156,104024568,104025563,104026046,104026678,104031107,104032016,104033959,104034959,104040195,104042068,104049607,104051980	103928724,103955770,103963176,103965554,103966831,103970621,103975553,103986320,103991224,103994386,103994603,103995807,103998728,104004335,104005405,104006554,104006709,104006845,104007204,104008466,104014841,104016088,104018192,104022330,104024680,104025776,104026136,104026939,104031263,104032087,104034069,104035056,104040334,104042187,104049680,104052667	0.666667
thoracic_aorta_male_adult_37_years	chr14	100138794	100138813	100138810	+	RAMPAGE_only	6	7	16	0.594159	3.577820	chr14	100138741	100139027	LINE|L2|L2b	-	chr14	100065444	100143863	STRG.105356.3	+	100065444,100084686,100097480,100123538,100126706,100128518,100129562,100132718,100135904,100137577,100137739,100141735,100143700	100065511,100084855,100097658,100123602,100126771,100128748,100129684,100132779,100135968,100137644,100141246,100141793,100143863	0.937500
thoracic_aorta_male_adult_37_years	chr5	83096186	83096192	83096186	+	RAMPAGE_only	2	2	7	0.259945	2.521641	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	0.714286
thoracic_aorta_male_adult_37_years	chr5	96979799	96979847	96979809	+	RAMPAGE_only	8	8	34	1.262588	3.333088	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	0.941176
thoracic_aorta_male_adult_37_years	chr2	203015483	203015519	203015483	+	High_confidence	5	5	27	1.002643	4.363713	chr2	203015479	203015763	SINE|Alu|AluSx1	-	chr2	203015790	203041857	NBEAL1|ENST00000492870.1	+	203015790,203016155,203041764	203015864,203016427,203041857	0.814815
thoracic_aorta_male_adult_37_years	chr6	80453180	80453181	80453180	+	RAMPAGE_only	5	5	7	0.259945	2.521641	chr6	80453039	80453457	LTR|ERVL-MaLR|MLT1I	-	chr6	80443343	80465927	AL359715.1|ENST00000452402.5	+	80443343,80453156,80462871,80465746	80443538,80453261,80463072,80465927	0.714286
thoracic_aorta_male_adult_37_years	chr8	37775914	37775926	37775922	+	High_confidence	4	4	9	0.334214	2.947703	chr8	37775874	37775923	LINE|CR1|L3	-	chr8	37774935	37778080	PLPBP|ENST00000522808.1	+	37774935,37775917,37777972	37775481,37776016,37778080	0.555556
thoracic_aorta_male_adult_37_years	chr15	58851957	58851958	58851957	+	RAMPAGE_only	15	17	17	0.631294	3.263933	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58817680	58857533	STRG.108127.4	+	58817680,58821716,58831773,58847296,58851770,58854481	58820762,58821819,58831916,58847470,58851965,58857533	1.000000
thoracic_aorta_male_adult_37_years	chr1	65050191	65050222	65050221	-	RAMPAGE_only	8	8	24	0.891239	3.882045	chr1	65050167	65050467	LINE|L2|L2b	-	chr1	65018328	65058430	STRG.4294.1	-	65018328,65031009,65052668	65030719,65052074,65058430	0.958333
thoracic_aorta_male_adult_37_years	chr19	11196112	11196219	11196131	-	High_confidence	34	34	238	8.838116	6.240516	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.953782
thoracic_aorta_male_adult_37_years	chr16	2770026	2770064	2770026	+	High_confidence	5	5	20	0.742699	4.037401	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2770934	SRRM2|ENST00000574866.1	+	2769894,2770351,2770603,2770857	2770227,2770465,2770717,2770934	0.700000
thoracic_aorta_male_adult_37_years	chr2	231208138	231208156	231208155	+	RAMPAGE_only	3	3	9	0.334214	3.000000	chr2	231207773	231208170	LINE|L1|L1MD	-	chr2	231206238	231374837	ARMC9|ENST00000611582.4	+	231206238,231208126,231214830,231216637,231222727,231226773,231235223,231239942,231256585,231258990,231262305,231270981,231272954,231276635,231278381,231282058,231291352,231296197,231331792,231344974,231355797,231360753,231369952,231371512	231206289,231208252,231215001,231216793,231222820,231226798,231235381,231240041,231256620,231259102,231262398,231271072,231273078,231276775,231278458,231282133,231291443,231296253,231331897,231345090,231355934,231360883,231370125,231374837	0.777778
thoracic_aorta_male_adult_37_years	chr2	231072232	231072233	231072232	+	RAMPAGE_only	5	5	8	0.297080	2.750000	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231066903	231075566	PSMD1|ENST00000444007.1	+	231066903,231070024,231072332,231075510	231067111,231070168,231072415,231075566	0.625000
thoracic_aorta_male_adult_37_years	chr17	50165931	50165941	50165940	+	High_confidence	5	5	12	0.445619	3.251629	chr17	50165337	50165958	LINE|L2|L2b	-	chr17	50165984	50175932	SGCA|NM_001135697.2	+	50165984,50167367,50167581,50167946,50168373,50170639,50175256,50175711	50166077,50167487,50167736,50168019,50168572,50170666,50175449,50175932	0.916667
thoracic_aorta_male_adult_37_years	chr8	42320574	42320598	42320574	+	High_confidence	3	3	9	0.334214	2.947703	chr8	42320403	42320611	SINE|MIR|MIRb	-	chr8	42320705	42331609	IKBKB|ENST00000519938.5	+	42320705,42322053,42322346,42325969,42329123,42330913	42321945,42322153,42322494,42326097,42329214,42331609	1.000000
thoracic_aorta_male_adult_37_years	chrX	20204028	20204080	20204028	-	RAMPAGE_only	2	2	12	0.445619	2.732159	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.916667
thoracic_aorta_male_adult_37_years	chr10	133369948	133369967	133369966	-	RAMPAGE_only	2	2	7	0.259945	2.584963	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.857143
thoracic_aorta_male_adult_37_years	chr2	217937065	217937177	217937167	-	High_confidence	18	19	104	3.862034	6.204999	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.653846
thoracic_aorta_male_adult_37_years	chr19	58312242	58312243	58312242	+	RAMPAGE_only	6	7	7	0.259945	2.584963	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.714286
thoracic_aorta_male_adult_37_years	chr11	71999605	71999633	71999614	+	High_confidence	12	24	67	2.488041	4.913649	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.925373
thoracic_aorta_male_adult_37_years	chr9	97697123	97697146	97697123	-	High_confidence	3	3	8	0.297080	2.750000	chr9	97696883	97697140	LINE|L1|L1M4b	-	chr9	97674908	97697293	XPA|ENST00000462523.5	-	97674908,97682199,97684922,97687095,97689533,97693648,97697120	97675587,97682430,97685040,97687261,97689639,97693759,97697293	0.750000
thoracic_aorta_male_adult_37_years	chr16	75248150	75248151	75248150	-	High_confidence	20	21	27	1.002643	3.824539	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.888889
thoracic_aorta_male_adult_37_years	chr6	116518131	116518152	116518151	+	RAMPAGE_only	3	4	7	0.259945	2.521641	chr6	116517598	116518419	LTR|ERVL|MER21C	+	chr6	116511645	116524792	CALHM5|ENST00000368599.3	+	116511645,116515599	116512236,116524792	1.000000
thoracic_aorta_male_adult_37_years	chr5	177022091	177022093	177022092	+	High_confidence	3	5	7	0.259945	2.584963	chr5	177021951	177022107	LINE|L2|L2a	-	chr5	177022679	177067982	ZNF346|NM_001308216.1	+	177022679,177041125,177041777,177064511	177022913,177041229,177041870,177067982	0.714286
thoracic_aorta_male_adult_37_years	chr11	67432353	67432354	67432353	+	High_confidence	5	5	7	0.259945	2.807355	chr11	67432311	67432468	LINE|L2|L2b	+	chr11	67432775	67434644	RPS6KB2|ENST00000526268.5	+	67432775,67432951,67433125,67433994,67434197,67434376,67434581	67432837,67433042,67433447,67434057,67434275,67434484,67434644	0.571429
thoracic_aorta_male_adult_37_years	chr12	8681676	8681677	8681676	+	High_confidence	20	20	23	0.854104	4.316828	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.695652
thoracic_aorta_male_adult_37_years	chr3	195689386	195689407	195689406	+	High_confidence	10	10	17	0.631294	3.500000	chr3	195689376	195689522	LINE|L1|L1MC5a	+	chr3	195689424	195696554	MUC20-OT1|ENST00000626677.1	+	195689424,195696360	195689608,195696554	0.647059
thoracic_aorta_male_adult_37_years	chr9	134373102	134373106	134373102	+	RAMPAGE_only	13	18	33	1.225453	4.304229	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134371970	134440585	RXRA|ENST00000356384.4	+	134371970,134374006,134401395,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134372139,134374130,134401540,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440585	0.878788
thoracic_aorta_male_adult_37_years	chr14	38948236	38948258	38948245	-	High_confidence	10	10	28	1.039778	4.363713	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	0.928571
thoracic_aorta_male_adult_37_years	chr5	140697942	140697986	140697942	+	High_confidence	2	2	10	0.371349	3.321928	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140698679	140704502	ZMAT2|ENST00000519913.6	+	140698679,140700818,140702005,140703917,140704425	140698831,140700912,140702129,140703991,140704502	0.600000
thoracic_aorta_male_adult_37_years	chr2	227888511	227888533	227888511	+	RAMPAGE_only	1	1	7	0.259945	2.584963	chr2	227888311	227888642	LTR|ERVL|ERV3-16A3_LTR	-	chr2	227889512	227895591	DAW1|ENST00000472604.1	+	227889512,227889855,227891254,227893794,227895498	227889573,227890000,227891313,227893917,227895591	0.571429
thoracic_aorta_male_adult_37_years	chr1	171207387	171207409	171207387	+	High_confidence	8	8	13	0.482754	3.546594	chr1	171207202	171207514	LINE|L2|L2	+	chr1	171207542	171209207	FMO2|ENST00000488431.1	+	171207542,171208793	171207790,171209207	0.846154
thoracic_aorta_male_adult_37_years	chr14	81192622	81192712	81192654	-	RAMPAGE_only	13	13	74	2.747986	5.614482	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.986486
thoracic_aorta_male_adult_37_years	chr4	54264931	54265041	54265035	+	RAMPAGE_only	10	10	74	2.747986	4.630116	chr4	54265070	54265216	SINE|MIR|MIR3	+	chr4	54230321	54298245	STRG.35932.3	+	54230321,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54280315,54285370,54285840,54287429,54288798,54289008,54290312,54295124	54233443,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54280482,54285486,54285963,54287541,54288898,54289114,54290554,54298245	0.824324
thoracic_aorta_male_adult_37_years	chr6	3083186	3083276	3083275	+	RAMPAGE_only	6	6	50	1.856747	4.408327	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.920000
thoracic_aorta_male_adult_37_years	chrX	103577211	103577212	103577211	+	High_confidence	16	23	23	0.854104	3.969002	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	1.000000
thoracic_aorta_male_adult_37_years	chr10	51203080	51203093	51203080	+	RAMPAGE_only	4	4	10	0.371349	2.646439	chr10	51202707	51203147	LINE|L2|L2	-	chr10	51187025	51213306	STRG.80528.2	+	51187025	51213306	1.000000
thoracic_aorta_male_adult_37_years	chr2	110118115	110118147	110118141	-	RAMPAGE_only	5	7	16	0.594159	3.577820	chr2	110117625	110118184	LINE|L1|L1MD2	-	chr2	110083869	110116566	MALL|NM_005434.4	-	110083869,110087571,110091602,110115687	110085757,110087697,110091770,110116566	0.687500
thoracic_aorta_male_adult_37_years	chr15	34588450	34588453	34588450	-	High_confidence	10	14	18	0.668429	3.947703	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.555556
thoracic_aorta_male_adult_37_years	chr5	149429308	149429387	149429308	+	RAMPAGE_only	36	38	154	5.718781	5.731253	chr5	149429244	149429309	DNA|hAT-Charlie|MER117	-	chr5	149406963	149436616	STRG.48061.1	+	149406963,149421480,149424089,149431575,149433812	149407078,149421601,149431481,149433705,149436616	0.980519
thoracic_aorta_male_adult_37_years	chr8	25342488	25342498	25342488	+	RAMPAGE_only	2	2	8	0.297080	2.750000	chr8	25342534	25342606	SINE|Alu|AluSx3	+	chr8	25351392	25364777	DOCK5|ENST00000481728.2	+	25351392,25358962,25363046,25364625	25351826,25359061,25363141,25364777	1.000000
thoracic_aorta_male_adult_37_years	chr20	48679360	48679388	48679367	-	RAMPAGE_only	3	3	10	0.371349	2.947703	chr20	48679185	48679349	SINE|MIR|MIR	-	chr20	48624251	48827883	PREX1|ENST00000371941.3	-	48624251,48627547,48627860,48629448,48630727,48632276,48632495,48634675,48636462,48637710,48639765,48642167,48642406,48644408,48645850,48649299,48649995,48650893,48651395,48652585,48653360,48655289,48657039,48658135,48659918,48666282,48676192,48679359,48679650,48681234,48688656,48690946,48692671,48700752,48708259,48726289,48734545,48745024,48747808,48827641	48625927,48627615,48627963,48629621,48630794,48632391,48632639,48634775,48636683,48637752,48639894,48642258,48642489,48644497,48646057,48649576,48650206,48651055,48651583,48652706,48653497,48655375,48657188,48658228,48660061,48666355,48676268,48679409,48679754,48681335,48688804,48691096,48692790,48700886,48708421,48726391,48734650,48745147,48747880,48827883	0.900000
thoracic_aorta_male_adult_37_years	chr17	63691793	63691840	63691839	+	RAMPAGE_only	6	6	20	0.742699	3.642150	chr17	63691879	63692027	SINE|MIR|MIRc	+	chr17	63622709	63693874	MAP3K3|ENST00000577395.5	+	63622709,63632680,63646033,63652556,63657793,63666939,63681765,63685516,63688526,63688788,63689543,63690263,63691101,63691732,63692241,63693548	63622763,63632802,63646074,63652656,63657907,63667060,63681899,63685578,63688594,63688881,63689735,63690412,63691233,63691862,63692419,63693874	0.950000
thoracic_aorta_male_adult_37_years	chr19	50016097	50016129	50016128	-	RAMPAGE_only	6	6	18	0.668429	3.616875	chr19	50016092	50016166	DNA|hAT-Ac|OldhAT1	-	chr19	49994862	50020647	VRK3|ENST00000599342.5	-	49994862,50000789,50007568,50009235,50015731,50016023,50020584	49994919,50000854,50007826,50009385,50015793,50016163,50020647	0.944444
thoracic_aorta_male_adult_37_years	chr3	138095201	138095202	138095201	-	RAMPAGE_only	5	5	7	0.259945	2.584963	chr3	138095060	138095271	SINE|MIR|MIR	+	chr3	138092351	138103778	DZIP1L|ENST00000490472.1	-	138092351,138094861,138097762,138103470	138092544,138094983,138097847,138103778	0.857143
thoracic_aorta_male_adult_37_years	chr17	74610249	74610254	74610249	-	RAMPAGE_only	5	6	12	0.445619	3.095795	chr17	74610012	74610669	LINE|L2|L2c	+	chr17	74609886	74623738	CD300E|ENST00000392619.1	-	74609886,74613924,74617117,74623581	74612773,74614033,74617465,74623738	0.833333
thoracic_aorta_male_adult_37_years	chr11	19745057	19745098	19745097	+	RAMPAGE_only	9	9	37	1.373993	3.891321	chr11	19745134	19745279	DNA|hAT-Tip100|MamTip2	+	chr11	19713596	20080184	STRG.85312.8	+	19713596,19832483,19842870,19868924,19879868,19892433,19933175,19939660,19946400,19948690,19984124,20035958,20043980,20044967,20048727,20049835,20051288,20055768,20068185,20068323,20077551,20077992,20080063	19777517,19832601,19842923,19868997,19880127,19892594,19934277,19939773,19946509,19949080,19984247,20036097,20044272,20045670,20049195,20049901,20054240,20062359,20068209,20068398,20077635,20078104,20080184	1.000000
thoracic_aorta_male_adult_37_years	chr3	135965673	135965749	135965723	+	High_confidence	18	31	147	5.458836	5.899352	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.986395
thoracic_aorta_male_adult_37_years	chr2	102419795	102419796	102419795	+	High_confidence	6	6	6	0.222810	2.584963	chr2	102419712	102419900	SINE|MIR|MIRb	+	chr2	102419685	102452384	IL18RAP|ENST00000409369.1	+	102419685,102423177,102424230,102437211,102441311,102443199,102445188,102447069,102450847,102451765	102419797,102423347,102424414,102437362,102441377,102443323,102445340,102447207,102451021,102452384	0.666667
thoracic_aorta_male_adult_37_years	chr11	108134295	108134315	108134312	+	RAMPAGE_only	2	2	8	0.297080	3.000000	chr11	108134362	108134663	SINE|Alu|AluSc	+	chr11	108138719	108140171	ACAT1|ENST00000534773.1	+	108138719,108140064	108139041,108140171	1.000000
thoracic_aorta_male_adult_37_years	chr7	158863399	158863410	158863409	+	RAMPAGE_only	5	5	13	0.482754	3.418296	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.923077
thoracic_aorta_male_adult_37_years	chr6	159681330	159681343	159681330	-	RAMPAGE_only	5	5	9	0.334214	2.750000	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	0.888889
thoracic_aorta_male_adult_37_years	chr11	12219986	12220016	12220015	+	RAMPAGE_only	3	3	10	0.371349	2.725481	chr11	12219649	12220077	LINE|RTE-X|L4_B_Mam	+	chr11	12207724	12263785	MICAL2|ENST00000530691.5	+	12207724,12209496,12213254,12216218,12220200,12221643,12222616,12223410,12224672,12226170,12227024,12236176,12239435,12256784,12258467,12259794	12208139,12209598,12213410,12216319,12220458,12221759,12222743,12223501,12224820,12226370,12227131,12236245,12239585,12256971,12258556,12263785	0.600000
thoracic_aorta_male_adult_37_years	chr12	26832797	26832843	26832797	-	High_confidence	7	9	35	1.299723	4.536670	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26716161	26832786	ITPR2|ENST00000545235.1	-	26716161,26722396,26724655,26725649,26832689	26716242,26722555,26724742,26725765,26832786	0.914286
thoracic_aorta_male_adult_37_years	chr14	81170385	81170431	81170402	-	High_confidence	4	4	16	0.594159	3.500000	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	1.000000
thoracic_aorta_male_adult_37_years	chr12	24368564	24368608	24368595	-	RAMPAGE_only	3	3	20	0.742699	3.826875	chr12	24368549	24368674	LINE|L2|L2b	+	chr12	23845998	24357430	SOX5|ENST00000536729.2	-	23845998,23895897,24213342,24277215,24357337	23846193,23896024,24213417,24277312,24357430	0.850000
thoracic_aorta_male_adult_37_years	chr15	57451534	57451598	57451575	+	RAMPAGE_only	14	15	100	3.713494	4.713728	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57437507	57550727	STRG.108023.3	+	57437507,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547351	57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.990000
thoracic_aorta_male_adult_37_years	chr8	29018764	29018789	29018764	+	RAMPAGE_only	2	2	8	0.297080	2.750000	chr8	29018661	29018776	LINE|CR1|L3	+	chr8	29010774	29051549	STRG.66812.7	+	29010774,29018759,29045360,29047357,29048956,29051017	29011519,29018913,29045443,29047453,29049048,29051549	1.000000
thoracic_aorta_male_adult_37_years	chr8	120124439	120124455	120124439	+	High_confidence	4	4	11	0.408484	3.121928	chr8	120124361	120124487	DNA|hAT-Charlie|MER5A	+	chr8	120125107	120373575	COL14A1|NM_021110.3	+	120125107,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120278110,120278434,120279934,120280710,120280920,120283635,120285860,120289607,120297510,120300731,120310008,120313931,120315532,120315943,120332140,120332663,120341324,120342379,120345374,120367170,120369329,120371151	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120278234,120278578,120280099,120280749,120281059,120283778,120285970,120289766,120297588,120300818,120310062,120314027,120315586,120315997,120332194,120332735,120341360,120342446,120345563,120367248,120369485,120373575	0.909091
thoracic_aorta_male_adult_37_years	chr10	125122892	125122914	125122913	-	RAMPAGE_only	4	4	9	0.334214	2.750000	chr10	125122889	125123516	LINE|L1|L1MD2	+	chr10	125118899	125142379	STRG.83666.11	-	125118899,125135342	125134552,125142379	0.777778
thoracic_aorta_male_adult_37_years	chr4	75047346	75047500	75047499	+	RAMPAGE_only	29	30	192	7.129908	4.633954	chr4	75047494	75047704	DNA|hAT-Charlie|MER20	+	chr4	74933115	75050113	PARM1|ENST00000307428.7	+	74933115,75012424,75033882,75046162	74933370,75013150,75033961,75050113	1.000000
thoracic_aorta_male_adult_37_years	chr1	230936160	230936190	230936189	-	High_confidence	2	2	6	0.222810	2.584963	chr1	230935195	230936141	LINE|L2|L2c	-	chr1	230906242	230936637	STRG.11152.2	-	230906242,230908711,230908941,230911469,230912622,230916192,230920509,230921420,230923840,230924840,230925516,230928936,230931297,230931735,230933778,230936157	230907019,230908791,230909020,230911549,230912758,230916302,230920594,230921504,230923933,230924973,230925647,230929093,230931472,230931877,230933861,230936637	0.500000
thoracic_aorta_male_adult_37_years	chr10	15688254	15688288	15688262	-	RAMPAGE_only	4	5	19	0.705564	3.683542	chr10	15688172	15688492	SINE|Alu|AluJb	+	chr10	15513948	15720125	ITGA8|ENST00000378076.3	-	15513948,15519289,15531049,15548454,15558073,15572210,15575488,15586583,15592224,15597206,15604207,15605723,15606284,15607676,15608234,15613659,15616513,15644029,15646845,15655353,15658998,15660878,15671602,15672623,15677591,15678721,15684003,15687937,15718765,15719562	15517244,15519412,15531151,15548568,15558202,15572369,15575594,15586664,15592304,15597299,15604355,15605791,15606422,15607831,15608290,15613767,15616559,15644221,15647051,15655406,15659055,15660922,15671647,15672749,15677637,15678783,15684127,15688038,15718899,15720125	0.789474
thoracic_aorta_male_adult_37_years	chr19	17197809	17197858	17197856	+	High_confidence	13	17	31	1.151183	4.413716	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	1.000000
thoracic_aorta_male_adult_37_years	chr1	14946031	14946055	14946036	+	High_confidence	3	4	11	0.408484	3.027169	chr1	14945935	14946157	SINE|MIR|MIR	-	chr1	14945918	15068155	KAZN|NM_001017999.2	+	14945918,14960683,15034748,15043988,15056090,15060171,15063571,15065629	14946173,14960875,15034885,15044159,15056280,15060302,15063622,15068155	0.909091
thoracic_aorta_male_adult_37_years	chr17	42662962	42662965	42662964	+	RAMPAGE_only	10	14	17	0.631294	3.875000	chr17	42662805	42662965	LTR|ERVL|MER21A	+	chr17	42660108	42666942	STRG.117676.5	+	42660108,42660638,42665475,42665677,42666322,42666602	42660316,42663503,42665562,42666239,42666484,42666942	0.941176
thoracic_aorta_male_adult_37_years	chr9	122406522	122406543	122406522	+	RAMPAGE_only	4	4	11	0.408484	3.277613	chr9	122405232	122406719	LTR|ERV1|LTR12C	-	chr9	122403406	122448977	AL359636.1|ENST00000433572.2	+	122403406,122404671,122415713,122416767,122447428,122448929	122403456,122404791,122415782,122416885,122447545,122448977	0.727273
thoracic_aorta_male_adult_37_years	chr5	150640033	150640054	150640033	+	High_confidence	2	2	8	0.297080	2.750000	chr5	150639917	150640111	SINE|MIR|MIR	+	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.750000
thoracic_aorta_male_adult_37_years	chr12	27030154	27030218	27030217	+	High_confidence	15	16	54	2.005287	3.616347	chr12	27030124	27030371	SINE|Alu|AluJr	-	chr12	27030259	27030673	MED21|ENST00000621885.1	+	27030259	27030673	0.962963
thoracic_aorta_male_adult_37_years	chr9	98007625	98007626	98007625	+	RAMPAGE_only	7	7	11	0.408484	3.121928	chr9	98007012	98008959	DNA|hAT-Charlie|Charlie3	+	chr9	97983360	98015943	ANP32B|ENST00000339399.4	+	97983360,97994630,97998555,98004963,98011270,98012420,98015363	97983609,97994780,97998678,98005153,98011389,98012472,98015943	0.636364
thoracic_aorta_male_adult_37_years	chr9	121463298	121463327	121463298	-	RAMPAGE_only	16	20	36	1.336858	4.707715	chr9	121463204	121463259	LINE|L2|L2	-	chr9	121446910	121467922	GGTA1P|ENST00000488429.5	-	121446910,121452145,121460103,121461253,121463292,121467846	121447595,121452275,121460219,121461314,121463328,121467922	0.694444
thoracic_aorta_male_adult_37_years	chr1	89272827	89272883	89272859	-	High_confidence	15	16	159	5.904455	5.617059	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.987421
thoracic_aorta_male_adult_37_years	chr4	94234072	94234073	94234072	+	RAMPAGE_only	9	9	14	0.519889	3.378783	chr4	94234038	94234182	SINE|MIR|MIR3	-	chr4	94208083	94289899	SMARCAD1|ENST00000394961.6	+	94208083,94208345,94213034,94226118,94233953,94236951,94240905,94249653,94250751,94252615,94264706,94270727,94273616,94274737,94274889,94276338,94277021,94278421,94278615,94278922,94280591,94281471,94283120,94284959,94289472	94208242,94208584,94213152,94226296,94234122,94237018,94241006,94249755,94250833,94253007,94264906,94270818,94273716,94274797,94274965,94276474,94277159,94278517,94278733,94279050,94280780,94281590,94283303,94285069,94289899	0.857143
thoracic_aorta_male_adult_37_years	chr1	12572757	12572799	12572757	-	RAMPAGE_only	5	5	20	0.742699	3.784184	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.900000
thoracic_aorta_male_adult_37_years	chr19	45780335	45780354	45780335	-	High_confidence	5	5	13	0.482754	3.022055	chr19	45780252	45780372	DNA|hAT-Charlie|MER5A	-	chr19	45778546	45780506	DMPK|ENST00000598180.1	-	45778546,45779438,45779777	45779359,45779522,45780506	0.923077
thoracic_aorta_male_adult_37_years	chr20	44714469	44714470	44714469	+	High_confidence	12	12	17	0.631294	3.734522	chr20	44714278	44714680	LINE|L2|L2b	+	chr20	44714843	44727812	WISP2|NM_001323370.1	+	44714843,44715365,44719896,44724737,44727086	44715161,44715450,44720113,44724992,44727812	0.882353
thoracic_aorta_male_adult_37_years	chr13	52570323	52570324	52570323	+	RAMPAGE_only	5	6	6	0.222810	2.584963	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.500000
thoracic_aorta_male_adult_37_years	chr1	16950991	16951023	16950991	+	RAMPAGE_only	6	6	25	0.928373	3.823935	chr1	16950976	16951061	DNA|hAT-Ac|OldhAT1	+	chr1	16953156	16954781	CROCC|ENST00000497654.2	+	16953156,16954222,16954733	16953481,16954357,16954781	0.760000
thoracic_aorta_male_adult_37_years	chrX	53220846	53220857	53220846	-	RAMPAGE_only	2	2	6	0.222810	2.584963	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53217828	53218737	KDM5C|ENST00000495519.1	-	53217828,53218275	53217966,53218737	0.500000
thoracic_aorta_male_adult_37_years	chr7	131510303	131510330	131510303	-	High_confidence	4	4	10	0.371349	2.725481	chr7	131510213	131510511	SINE|Alu|AluSx3	+	chr7	131509068	131510898	PODXL|ENST00000482581.1	-	131509068,131510827	131509585,131510898	0.800000
thoracic_aorta_male_adult_37_years	chr4	141332616	141332617	141332616	-	High_confidence	38	38	44	1.633937	3.728736	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.977273
thoracic_aorta_male_adult_37_years	chr1	151119160	151119171	151119160	+	RAMPAGE_only	2	2	7	0.259945	2.584963	chr1	151119029	151119323	SINE|Alu|AluJr	+	chr1	151070603	151125542	GABPB2|ENST00000368918.7	+	151070603,151088189,151090405,151093191,151097851,151103561,151107036,151117391,151117956	151070934,151088297,151090573,151093386,151098002,151103675,151107222,151117516,151125542	0.857143
thoracic_aorta_male_adult_37_years	chr2	201790489	201790512	201790499	+	High_confidence	3	3	10	0.371349	2.646439	chr2	201790433	201790802	LINE|L2|L2-3_Crp	-	chr2	201790460	201876583	CDK15|ENST00000451080.5	+	201790460,201800783,201806428,201807493,201807852,201812482,201822808,201823664,201833847,201835642,201847380,201854873,201872277,201876523	201790660,201800901,201806547,201807643,201807952,201812562,201822903,201823727,201833971,201835763,201847474,201854937,201872326,201876583	0.500000
thoracic_aorta_male_adult_37_years	chr5	150640347	150640352	150640347	+	High_confidence	10	10	19	0.705564	3.947703	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.736842
thoracic_aorta_male_adult_37_years	chr16	65053812	65053840	65053820	-	RAMPAGE_only	10	10	34	1.262588	4.718488	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.823529
thoracic_aorta_male_adult_37_years	chr17	50286324	50286357	50286335	-	High_confidence	21	22	80	2.970795	5.380875	chr17	50286169	50286334	SINE|Alu|AluJo	-	chr17	50286072	50286306	STRG.118665.1	-	50286072	50286306	0.887500
thoracic_aorta_male_adult_37_years	chr15	25766392	25766417	25766410	-	RAMPAGE_only	4	6	17	0.631294	3.149397	chr15	25766295	25766398	SINE|MIR|MIRc	-	chr15	25758940	25863541	STRG.106110.14	-	25758940,25780002,25782851,25862647	25779954,25781223,25783003,25863541	0.941176
thoracic_aorta_male_adult_37_years	chr5	141646249	141646315	141646249	-	High_confidence	4	4	21	0.779834	3.422578	chr5	141646242	141646475	SINE|MIR|MIR	-	chr5	141644629	141646364	FCHSD1|ENST00000518499.1	-	141644629,141644858,141645019,141645770,141646086	141644690,141644942,141645148,141645932,141646364	1.000000
thoracic_aorta_male_adult_37_years	chr11	68180141	68180180	68180141	-	High_confidence	6	6	16	0.594159	3.640224	chr11	68180123	68180214	SINE|MIR|MIRc	+	chr11	68171118	68180165	KMT5B|ENST00000323599.10	-	68171118,68171231,68171542,68173803,68174087,68175017,68180131	68171151,68171251,68171709,68173913,68174210,68175183,68180165	0.750000
thoracic_aorta_male_adult_37_years	chr2	9422817	9422818	9422817	-	High_confidence	10	10	12	0.445619	3.277613	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NM_001319068.1	-	9405680,9407448,9408112,9412268,9414177,9418625,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9422660	0.500000
thoracic_aorta_male_adult_37_years	chr4	158173024	158173025	158173024	-	High_confidence	157	164	208	7.724067	6.135646	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.947115
thoracic_aorta_male_adult_37_years	chr4	119235088	119235127	119235088	+	RAMPAGE_only	5	5	13	0.482754	2.931209	chr4	119234977	119235125	SINE|MIR|MIRc	-	chr4	119212742	119237311	STRG.38509.12	+	119212742,119217549,119220115	119214222,119217673,119237311	1.000000
thoracic_aorta_male_adult_37_years	chr16	81664333	81664344	81664343	+	RAMPAGE_only	6	6	14	0.519889	3.378783	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.857143
thoracic_aorta_male_adult_37_years	chr3	195688686	195688699	195688686	+	High_confidence	2	2	9	0.334214	2.641604	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688755	195708806	MUC20-OT1|ENST00000628547.2	+	195688755,195689338,195696360,195699029,195708133,195708746	195688797,195689438,195696589,195699178,195708435,195708806	0.777778
thoracic_aorta_male_adult_37_years	chr12	6016516	6016580	6016541	-	RAMPAGE_only	4	4	29	1.076913	4.375222	chr12	6016356	6016502	SINE|MIR|MIR3	-	chr12	5948873	6124675	VWF|ENST00000261405.9	-	5948873,5949785,5951843,5952390,5953495,5967485,5968126,5969210,5971598,5976110,5981785,5983149,5985044,5985562,5991818,5993861,5994414,5996001,6011616,6012086,6013480,6016088,6016515,6016753,6018364,6021899,6022739,6023630,6025579,6025905,6029341,6031443,6034687,6036387,6044290,6046722,6052542,6056856,6057848,6062953,6064245,6065136,6071296,6072330,6073618,6075334,6095459,6110373,6110865,6121173,6123141,6124420	5949203,5949883,5951883,5952519,5953594,5967602,5968167,5969391,5971709,5976260,5981991,5983254,5985119,5985665,5992018,5994203,5994607,5996222,6011794,6012130,6013645,6016232,6016656,6016870,6019743,6022035,6022898,6023787,6025693,6026046,6029488,6031578,6034826,6036491,6044451,6046817,6052783,6057072,6058044,6063054,6064384,6065273,6071343,6072442,6073741,6075551,6095584,6110582,6110968,6121338,6123196,6124675	0.965517
thoracic_aorta_male_adult_37_years	chr14	68882758	68882777	68882771	-	High_confidence	8	8	25	0.928373	3.813661	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.680000
thoracic_aorta_male_adult_37_years	chr3	108165472	108165474	108165473	-	RAMPAGE_only	4	6	8	0.297080	2.521641	chr3	108165378	108165542	DNA|hAT-Ac|OldhAT1	+	chr3	108160811	108222570	IFT57|NM_018010.3	-	108160811,108163662,108165430,108166853,108167792,108191520,108206627,108213930,108218534,108219409,108222110	108162655,108163729,108165493,108166985,108167864,108191643,108206696,108214021,108218653,108219572,108222570	0.875000
thoracic_aorta_male_adult_37_years	chr5	73078288	73078289	73078288	+	RAMPAGE_only	4	6	6	0.222810	2.584963	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.833333
thoracic_aorta_male_adult_37_years	chr9	92536674	92536718	92536703	-	High_confidence	7	10	22	0.816969	4.201841	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.954545
thoracic_aorta_male_adult_37_years	chr9	129698743	129698760	129698743	+	RAMPAGE_only	10	10	40	1.485398	4.907072	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	0.675000
thoracic_aorta_male_adult_37_years	chr3	114693543	114693568	114693543	-	RAMPAGE_only	4	4	12	0.445619	2.918296	chr3	114693457	114693551	SINE|MIR|MIR	+	chr3	114338683	114758940	ZBTB20|ENST00000464560.5	-	114338683,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114758940	0.750000
thoracic_aorta_male_adult_37_years	chr19	1134589	1134610	1134609	-	RAMPAGE_only	3	3	11	0.408484	3.277613	chr19	1134434	1134765	LINE|L1|L1MB7	+	chr19	1107633	1132274	SBNO2|NM_001100122.1	-	1107633,1108778,1109134,1109291,1109505,1109682,1110744,1111018,1111505,1111995,1112188,1112401,1112817,1113534,1114230,1116020,1116828,1117322,1119010,1119515,1119905,1122138,1122467,1122657,1122893,1123533,1123941,1127603,1132089	1108704,1108969,1109211,1109423,1109598,1109777,1110888,1111093,1111614,1112067,1112301,1112537,1112949,1113704,1114422,1116103,1116926,1117499,1119164,1119621,1120023,1122282,1122558,1122791,1123045,1123639,1124022,1127765,1132274	0.909091
thoracic_aorta_male_adult_37_years	chr5	149429737	149430333	149430014	+	RAMPAGE_only	140	154	1194	44.339118	6.872227	chr5	149429900	149430079	SINE|MIR|MIRb	-	chr5	149406963	149436616	STRG.48061.1	+	149406963,149421480,149424089,149431575,149433812	149407078,149421601,149431481,149433705,149436616	1.000000
thoracic_aorta_male_adult_37_years	chr7	103353922	103353957	103353956	+	High_confidence	10	10	18	0.668429	2.816340	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.944444
thoracic_aorta_male_adult_37_years	chr4	2936007	2936054	2936007	+	High_confidence	8	9	30	1.114048	3.355913	chr4	2935837	2936474	LTR|ERV1|LTR8	+	chr4	2935545	2942051	NOP14-AS1|ENST00000512712.2	+	2935545,2937751,2940301	2936890,2937844,2942051	1.000000
thoracic_aorta_male_adult_37_years	chr5	140700445	140700452	140700445	+	High_confidence	654	757	1313	48.758176	5.094140	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.980198
thoracic_aorta_male_adult_37_years	chr3	194486575	194486576	194486575	-	High_confidence	6	6	8	0.297080	2.750000	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194459888	194486659	ATP13A3|ENST00000457986.5	-	194459888,194460657,194462139,194485793,194486565	194459971,194460831,194462236,194485835,194486659	0.625000
thoracic_aorta_male_adult_37_years	chr12	123617863	123617864	123617863	+	High_confidence	8	8	9	0.334214	2.750000	chr12	123617854	123617910	LINE|RTE-X|L4_A_Mam	-	chr12	123618015	123620422	DDX55|ENST00000421670.3	+	123618015,123619431,123619963	123618837,123619724,123620422	0.888889
thoracic_aorta_male_adult_37_years	chr8	117901176	117901193	117901192	-	RAMPAGE_only	4	4	11	0.408484	2.721928	chr8	117901114	117901685	DNA|TcMar-Tigger|Tigger3b	-	chr8	117879550	117997227	STRG.69914.9	-	117879550,117887982	117887481,117997227	0.909091
thoracic_aorta_male_adult_37_years	chr1	23417904	23417997	23417904	-	RAMPAGE_only	13	13	112	4.159113	5.718739	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23408559	23419236	TCEA3|ENST00000374602.2	-	23408559,23417248,23417903,23419076	23408726,23417390,23418009,23419236	0.562500
thoracic_aorta_male_adult_37_years	chr2	217814301	217814346	217814328	-	High_confidence	11	12	31	1.151183	4.232760	chr2	217814000	217814314	SINE|Alu|AluJr	-	chr2	217803797	217814016	TNS1|ENST00000490566.1	-	217803797,217808074,217808602,217809822,217810247,217812367,217813214,217813684	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217814016	0.741935
thoracic_aorta_male_adult_37_years	chr12	104131799	104131819	104131799	-	RAMPAGE_only	3	3	14	0.519889	3.039149	chr12	104131717	104131821	LINE|L2|L2c	-	chr12	104131131	104138241	NFYB|ENST00000550881.1	-	104131131,104135447,104138140	104131838,104135532,104138241	0.642857
thoracic_aorta_male_adult_37_years	chr12	56171849	56171926	56171925	-	RAMPAGE_only	5	7	29	1.076913	4.168326	chr12	56171922	56171983	DNA|hAT-Ac|OldhAT1	+	chr12	56163344	56174713	STRG.94471.5	-	56163344,56164647,56165317,56168059,56169528,56169775,56170143,56171270,56171678,56172427,56172584,56173695,56174650	56163765,56164731,56165699,56168194,56169695,56169911,56170208,56171432,56171937,56172490,56172704,56173849,56174713	1.000000
thoracic_aorta_male_adult_37_years	chrX	134514013	134514017	134514013	+	RAMPAGE_only	3	3	8	0.297080	2.807355	chrX	134513742	134514046	SINE|Alu|AluJb	-	chrX	134519857	134521665	STRG.140574.2	+	134519857	134521665	0.875000
thoracic_aorta_male_adult_37_years	chr7	107580245	107580267	107580245	+	High_confidence	522	526	2570	95.436795	6.947676	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.931128
thoracic_aorta_male_adult_37_years	chr8	144106356	144106394	144106393	+	High_confidence	8	8	30	1.114048	4.582119	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.800000
thoracic_aorta_male_adult_37_years	chr17	47067487	47067513	47067498	-	High_confidence	134	142	507	18.827415	5.685490	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.944773
thoracic_aorta_male_adult_37_years	chr1	202582347	202582366	202582365	+	RAMPAGE_only	6	7	12	0.445619	2.913977	chr1	202581884	202582432	LINE|CR1|L3	-	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.916667
thoracic_aorta_male_adult_37_years	chr1	110897875	110897886	110897875	+	RAMPAGE_only	6	6	13	0.482754	3.022055	chr1	110897898	110898002	SINE|MIR|MIR	+	chr1	110894308	110899851	CD53|ENST00000497404.1	+	110894308,110894959,110899123	110894401,110895055,110899851	0.923077
thoracic_aorta_male_adult_37_years	chr1	162781388	162781426	162781388	+	RAMPAGE_only	9	10	36	1.336858	4.314973	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.944444
thoracic_aorta_male_adult_37_years	chr1	227142956	227143016	227142956	-	RAMPAGE_only	18	19	33	1.225453	4.741364	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.696970
thoracic_aorta_male_adult_37_years	chr11	96387536	96387591	96387561	-	High_confidence	3	3	12	0.445619	3.277613	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	0.750000
thoracic_aorta_male_adult_37_years	chr6	31587007	31587014	31587009	+	High_confidence	3	5	11	0.408484	3.321928	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.909091
thoracic_aorta_male_adult_37_years	chr18	244443	244458	244457	-	RAMPAGE_only	6	7	10	0.371349	3.169925	chr18	243923	245900	LINE|L1|L1MEi	-	chr18	214520	245734	THOC1|ENST00000583228.5	-	214520,215428,216485,218885,223439,224083,224923,225088,226800,244301	214921,215504,216633,218969,223505,224179,224994,225403,226901,245734	0.600000
thoracic_aorta_male_adult_37_years	chr7	106249743	106249881	106249761	-	RAMPAGE_only	14	14	73	2.710851	4.611636	chr7	106249585	106249780	DNA|hAT-Charlie|MER58A	-	chr7	106248284	106284887	STRG.62974.2	-	106248284,106253016,106254363,106263391,106269153,106272529,106274945,106277022,106284827	106251193,106253151,106261707,106268600,106269312,106272658,106275049,106277179,106284887	0.986301
thoracic_aorta_male_adult_37_years	chr12	102108248	102108263	102108262	+	High_confidence	5	5	14	0.519889	3.180833	chr12	102108033	102108604	LTR|ERVL|MLT2B3	+	chr12	102108287	102109012	STRG.96556.1	+	102108287	102109012	0.571429
thoracic_aorta_male_adult_37_years	chr21	41430585	41430586	41430585	+	RAMPAGE_only	5	5	8	0.297080	2.521641	chr21	41429929	41430715	DNA|hAT-Charlie|Charlie2b	+	chr21	41431713	41459214	MX1|ENST00000288383.10	+	41431713,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41432175,41435960,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	0.875000
thoracic_aorta_male_adult_37_years	chr9	129858100	129858105	129858100	+	RAMPAGE_only	5	5	13	0.482754	3.251629	chr9	129858116	129858180	SINE|MIR|MIRb	+	chr9	129835477	129881828	USP20|ENST00000358355.5	+	129835477,129849812,129852539,129856306,129858049,129858466,129860936,129861542,129863185,129865302,129868004,129868861,129869309,129869671,129870452,129873481,129873698,129874575,129874828,129875309,129875559,129876129,129878337,129879572,129880112,129880466	129835597,129849924,129852636,129856360,129858112,129858598,129861033,129861612,129863299,129865381,129868449,129869002,129869425,129869844,129870547,129873515,129873744,129874756,129874955,129875479,129875641,129876238,129878440,129879644,129880289,129881828	0.846154
thoracic_aorta_male_adult_37_years	chr14	54694616	54694619	54694616	+	RAMPAGE_only	2	2	6	0.222810	2.584963	chr14	54693738	54694619	LINE|L2|L2a	-	chr14	54688019	54735137	SAMD4A|ENST00000557013.1	+	54688019,54689624,54692951,54696843,54701023,54702061,54734939	54688300,54690057,54694926,54696956,54701141,54702580,54735137	0.833333
thoracic_aorta_male_adult_37_years	chr9	71686285	71686367	71686285	-	RAMPAGE_only	20	20	36	1.336858	3.758981	chr9	71686096	71686602	DNA|hAT-Charlie|MER1A	+	chr9	71683570	71687428	CEMIP2|ENST00000538669.1	-	71683570,71685742	71685393,71687428	0.972222
thoracic_aorta_male_adult_37_years	chr11	65382641	65382646	65382645	-	High_confidence	4	4	9	0.334214	2.947703	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	1.000000
thoracic_aorta_male_adult_37_years	chr1	17634297	17634332	17634297	+	High_confidence	6	7	14	0.519889	3.093069	chr1	17634235	17634370	SINE|MIR|MIRb	+	chr1	17634256	17638003	ARHGEF10L|ENST00000482359.1	+	17634256,17634834,17637887	17634562,17635016,17638003	1.000000
thoracic_aorta_male_adult_37_years	chr22	45337916	45337925	45337916	+	RAMPAGE_only	2	2	6	0.222810	2.584963	chr22	45337899	45338230	LINE|L1|HAL1ME	-	chr22	45336394	45340882	FAM118A|ENST00000479180.1	+	45336394,45337833,45340385	45336411,45337968,45340882	1.000000
thoracic_aorta_male_adult_37_years	chr20	37297387	37297401	37297387	+	High_confidence	13	14	27	1.002643	4.085055	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.888889
thoracic_aorta_male_adult_37_years	chr12	7111444	7111479	7111454	+	RAMPAGE_only	2	2	9	0.334214	3.000000	chr12	7111409	7111556	SINE|Alu|AluJb	+	chr12	7108570	7121027	C1RL-AS1|ENST00000382215.3	+	7108570,7110297,7111024,7112006,7115129,7118898,7119499,7120505	7108947,7110572,7111606,7112064,7115219,7119026,7119553,7121027	0.777778
thoracic_aorta_male_adult_37_years	chr14	95516099	95516121	95516120	+	High_confidence	4	6	11	0.408484	2.921928	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.818182
thoracic_aorta_male_adult_37_years	chr19	48868595	48868617	48868595	-	High_confidence	1239	1303	5671	210.592244	7.758837	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.992770
thoracic_aorta_male_adult_37_years	chr11	47751518	47751522	47751521	-	RAMPAGE_only	5	5	9	0.334214	3.169925	chr11	47751373	47751591	DNA|hAT-Charlie|MER20	-	chr11	47731839	47767286	FNBP4|ENST00000534003.5	-	47731839,47734024,47736615,47743952,47746055,47750915,47751142,47752915,47754527,47765269,47767068	47732670,47734129,47736740,47744163,47746394,47751036,47751290,47753102,47754664,47765362,47767286	1.000000
thoracic_aorta_male_adult_37_years	chr9	89479889	89479890	89479889	-	High_confidence	41	41	47	1.745342	3.873211	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89402924	89479890	SEMA4D|ENST00000540475.5	-	89402924,89405350,89455887,89479571	89403016,89405699,89455953,89479890	0.957447
thoracic_aorta_male_adult_37_years	chr2	190915812	190915843	190915842	+	RAMPAGE_only	91	100	151	5.607376	3.945038	chr2	190915796	190916136	DNA|hAT-Charlie|Charlie2b	+	chr2	190881154	190924592	STRG.21575.5	+	190881154,190895603,190901946,190905003,190910262,190913192,190921023,190921144,190923916,190924542	190895248,190900693,190902026,190905167,190910321,190920248,190921056,190921203,190923983,190924592	0.993377
thoracic_aorta_male_adult_37_years	chr6	77369031	77369032	77369031	-	RAMPAGE_only	11	17	17	0.631294	3.969816	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77150982	77273309	STRG.52828.1	-	77150982,77151818,77271339,77273026	77151280,77151974,77271493,77273309	0.705882
thoracic_aorta_male_adult_37_years	chr16	53445773	53445794	53445780	+	High_confidence	6	6	22	0.816969	3.975418	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.681818
thoracic_aorta_male_adult_37_years	chr17	7576367	7576375	7576374	+	High_confidence	3	3	7	0.259945	2.807355	chr17	7576304	7576490	SINE|MIR|MIR	+	chr17	7576531	7578631	EIF4A1|ENST00000583389.5	+	7576531,7577055,7577343,7577568,7577826,7578226,7578341	7576692,7577165,7577487,7577706,7577916,7578244,7578631	1.000000
thoracic_aorta_male_adult_37_years	chr5	149411842	149412260	149411842	+	RAMPAGE_only	89	90	853	31.676104	5.963827	chr5	149411827	149412030	SINE|MIR|MIRb	-	chr5	149407244	149424381	STRG.48061.10	+	149407244,149421480,149423433	149420544,149423309,149424381	0.997655
thoracic_aorta_male_adult_37_years	chr19	18938355	18938395	18938355	-	High_confidence	3	3	15	0.557024	3.139572	chr19	18938201	18938361	SINE|MIR|MIR3	-	chr19	18929438	18938982	HOMER3|ENST00000594439.5	-	18929438,18931324,18931508,18931975,18932923,18938352,18938727,18938968	18929634,18931411,18931625,18932132,18933045,18938484,18938884,18938982	0.866667
thoracic_aorta_male_adult_37_years	chr11	307580	307581	307580	-	RAMPAGE_only	7	7	7	0.259945	2.521641	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	0.714286
thoracic_aorta_male_adult_37_years	chr21	46113594	46113627	46113594	+	High_confidence	39	45	107	3.973439	4.891336	chr21	46113375	46113722	SINE|Alu|AluJr	-	chr21	46113616	46117521	COL6A2|ENST00000485591.1	+	46113616,46115871,46116008,46116376,46116650,46116769,46117399	46114073,46115925,46116053,46116403,46116677,46116814,46117521	0.934579
thoracic_aorta_male_adult_37_years	chr19	37465314	37465319	37465318	-	RAMPAGE_only	6	6	12	0.445619	3.277613	chr19	37464765	37465454	LINE|L2|L2a	+	chr19	37411154	37467229	ZNF569|ENST00000392149.6	-	37411154,37425867,37426251,37444906,37467086	37414419,37425963,37426378,37444964,37467229	0.583333
thoracic_aorta_male_adult_37_years	chr3	8565250	8565332	8565250	+	RAMPAGE_only	7	7	37	1.373993	4.629004	chr3	8565226	8565399	SINE|MIR|MIR	-	chr3	8501887	8567764	LMCD1|ENST00000456506.2	+	8501887,8532736,8548567,8565431,8567439	8501980,8532825,8548903,8565647,8567764	0.648649
thoracic_aorta_male_adult_37_years	chrX	103607551	103607580	103607579	+	High_confidence	7	7	25	0.928373	3.605389	chrX	103607556	103607707	SINE|MIR|MIRb	+	chrX	103607450	103609927	TCEAL3|ENST00000372628.5	+	103607450,103608603,103609042	103607716,103608673,103609927	0.920000
thoracic_aorta_male_adult_37_years	chr5	133089637	133089678	133089677	+	RAMPAGE_only	39	39	96	3.564954	5.659606	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.947917
thoracic_aorta_male_adult_37_years	chrX	71547454	71547456	71547455	+	RAMPAGE_only	9	12	16	0.594159	3.327820	chrX	71547285	71547497	DNA|hAT-Charlie|MER103C	-	chrX	71533127	71574655	STRG.138155.5	+	71533127,71536177,71537828,71544566,71554512,71555189,71555953,71556679,71556951,71557194,71557492,71559266,71559587,71561774,71562846,71563129,71563328,71564600,71567992,71573619	71533336,71536358,71538072,71548023,71554592,71555385,71556094,71556780,71557105,71557296,71557672,71559425,71559677,71561900,71563017,71563246,71563499,71567752,71568116,71574655	1.000000
thoracic_aorta_male_adult_37_years	chr19	52215807	52215872	52215828	+	RAMPAGE_only	4	6	23	0.854104	4.088779	chr19	52215807	52215838	LINE|L2|L2b	-	chr19	52212829	52219734	PPP2R1A|ENST00000473820.1	+	52212829,52215778,52216003,52216528,52219690	52213110,52215893,52216074,52216663,52219734	0.652174
thoracic_aorta_male_adult_37_years	chr14	89486662	89486694	89486693	-	RAMPAGE_only	7	7	23	0.854104	4.023137	chr14	89486513	89486649	SINE|5S-Deu-L2|AmnSINE1	-	chr14	89161384	89417112	FOXN3|ENST00000557258.5	-	89161384,89180700,89280949,89350671,89411933,89416870	89162969,89180806,89281014,89350808,89412490,89417112	0.739130
thoracic_aorta_male_adult_37_years	chr6	75641991	75642023	75641991	+	RAMPAGE_only	2	2	11	0.408484	2.845351	chr6	75641935	75642135	DNA|TcMar-Tigger|Tigger8	+	chr6	75602223	75663505	STRG.52730.7	+	75602223,75621531,75623899,75633580,75634706,75640683,75659261,75663220	75602576,75621625,75623960,75633726,75634811,75647801,75659407,75663505	1.000000
thoracic_aorta_male_adult_37_years	chr1	151455065	151455066	151455065	-	RAMPAGE_only	5	5	7	0.259945	2.521641	chr1	151454831	151455120	SINE|Alu|AluSg	+	chr1	151430713	151458514	STRG.7685.11	-	151430713,151440927,151442080,151442304	151430841,151441086,151442205,151458514	0.857143
thoracic_aorta_male_adult_37_years	chr11	114291979	114291994	114291979	+	RAMPAGE_only	4	4	11	0.408484	2.721928	chr11	114291929	114292194	LINE|L1|L1ME3B	-	chr11	114059592	114312515	STRG.89637.1	+	114059592,114063210,114156336,114186951,114242166,114247197,114250325,114293681	114061561,114064568,114156434,114187038,114242337,114247365,114293447,114312515	0.909091
thoracic_aorta_male_adult_37_years	chr19	51688373	51688428	51688387	+	High_confidence	5	6	38	1.411128	4.939183	chr19	51688154	51688544	LINE|L2|L2c	+	chr19	51688604	51688993	STRG.126790.1	+	51688604	51688993	0.868421
thoracic_aorta_male_adult_37_years	chr19	19794137	19794155	19794154	-	RAMPAGE_only	3	3	8	0.297080	3.000000	chr19	19794027	19794322	SINE|Alu|AluSq2	+	chr19	19785841	19821709	ZNF506|ENST00000443905.6	-	19785841,19791561,19793833,19806030,19806941,19821600	19786854,19792484,19795660,19806126,19807068,19821709	0.500000
thoracic_aorta_male_adult_37_years	chr10	93431409	93431476	93431448	-	RAMPAGE_only	9	9	48	1.782477	4.852045	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.916667
thoracic_aorta_male_adult_37_years	chr5	176943322	176943348	176943337	-	RAMPAGE_only	3	3	10	0.371349	3.169925	chr5	176943235	176943320	DNA|hAT-Charlie|Charlie10	-	chr5	176905065	176970793	UIMC1|ENST00000510698.2	-	176905065,176906010,176907113,176908522,176911310,176943334,176951473,176955958,176958092,176969600,176970741	176905492,176906047,176907177,176908694,176911389,176943488,176951577,176956035,176958154,176969706,176970793	0.700000
thoracic_aorta_male_adult_37_years	chr20	44106143	44106169	44106168	-	RAMPAGE_only	3	4	11	0.408484	3.121928	chr20	44105858	44106122	LTR|ERVL-MaLR|MLT1L	-	chr20	44093831	44187093	STRG.129689.2	-	44093831,44115664,44118504,44159617,44181495,44186326	44114876,44116386,44118623,44160407,44181570,44187093	0.909091
thoracic_aorta_male_adult_37_years	chr22	42721262	42721272	42721262	-	High_confidence	5	5	18	0.668429	3.410417	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.888889
thoracic_aorta_male_adult_37_years	chr15	92914950	92914970	92914950	+	High_confidence	7	7	17	0.631294	3.734522	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.764706
thoracic_aorta_male_adult_37_years	chr2	113625629	113625679	113625643	-	RAMPAGE_only	10	10	40	1.485398	4.177567	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	1.000000
thoracic_aorta_male_adult_37_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	52	52	52	1.931017	4.169177	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
thoracic_aorta_male_adult_37_years	chr7	100349853	100349880	100349853	+	RAMPAGE_only	3	3	11	0.408484	3.095795	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336124	100353692	STRG.62406.8	+	100336124,100338178,100338772,100345864,100352563,100352996,100353209,100353372	100336220,100338264,100338889,100352478,100352914,100353123,100353270,100353692	1.000000
thoracic_aorta_male_adult_37_years	chr15	89196049	89196050	89196049	+	RAMPAGE_only	5	7	7	0.259945	2.807355	chr15	89196019	89196147	DNA|hAT-Charlie|MER5A	-	chr15	89088149	89202360	ABHD2|NM_007011.7	+	89088149,89090282,89102499,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89202360	1.000000
thoracic_aorta_male_adult_37_years	chr4	184855684	184855707	184855684	-	High_confidence	8	8	15	0.557024	3.521641	chr4	184855538	184855766	LTR|ERVL-MaLR|MLT1J1	-	chr4	184846277	184855682	MIR3945HG|ENST00000510284.1	-	184846277,184850494,184855468	184846534,184850599,184855682	0.733333
thoracic_aorta_male_adult_37_years	chr12	45952269	45952308	45952280	-	RAMPAGE_only	8	8	36	1.336858	3.582720	chr12	45952193	45952302	LINE|L1|L1ME4b	-	chr12	45924946	45990565	STRG.93436.2	-	45924946,45926141,45931505,45933130,45934175,45934446,45945248,45948436,45951649,45964106,45990352	45925074,45928859,45931612,45933232,45934285,45934505,45945313,45948537,45961857,45964188,45990565	0.944444
thoracic_aorta_male_adult_37_years	chr1	179118609	179118681	179118609	-	RAMPAGE_only	7	7	25	0.928373	4.055958	chr1	179118593	179118709	LINE|RTE-BovB|MamRTE1	-	chr1	179107717	179143044	ABL2|ENST00000504405.5	-	179107717,179109207,179110281,179112308,179114877,179117331,179118586,179120189,179121594,179126376,179131310,179142932	179108898,179109441,179110455,179112398,179115030,179117516,179118764,179120274,179121867,179126672,179131481,179143044	0.800000
thoracic_aorta_male_adult_37_years	chr9	125337374	125337383	125337374	+	RAMPAGE_only	5	7	14	0.519889	3.085055	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125323648	125363025	STRG.76607.8	+	125323648,125326415,125330077,125332509,125337017,125337220,125341176,125342218,125346818,125349389,125350294,125350712,125354653,125355643,125359419,125360527,125362605	125323923,125326589,125332060,125332629,125337095,125337591,125341264,125342299,125346941,125349519,125350404,125350872,125354841,125355857,125359492,125360725,125363025	0.714286
thoracic_aorta_male_adult_37_years	chr22	44181160	44181184	44181183	+	High_confidence	6	7	12	0.445619	2.855389	chr22	44181132	44181213	LINE|L2|L2a	-	chr22	44181335	44206622	PARVG|ENST00000475485.6	+	44181335,44181741,44183317,44185807,44186576,44189113,44190550,44192048,44196156,44196346,44198620,44205756,44206316	44181370,44181917,44183408,44185872,44187878,44189254,44190666,44192129,44196213,44196415,44198722,44205829,44206622	1.000000
thoracic_aorta_male_adult_37_years	chr20	49005209	49005210	49005209	+	RAMPAGE_only	5	5	7	0.259945	2.521641	chr20	49005231	49005414	LTR|ERVL|LTR84b	+	chr20	49009475	49021327	STRG.129944.4	+	49009475,49013563,49016279,49017248,49017495,49018883	49012084,49013960,49016415,49017387,49017550,49021327	1.000000
thoracic_aorta_male_adult_37_years	chr21	34512192	34512219	34512192	-	High_confidence	6	6	17	0.631294	3.616875	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.588235
thoracic_aorta_male_adult_37_years	chr1	202582664	202582755	202582737	+	RAMPAGE_only	12	12	69	2.562311	4.700218	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	1.000000
thoracic_aorta_male_adult_37_years	chrX	153487593	153487629	153487611	-	High_confidence	37	43	175	6.498614	5.630279	chrX	153487559	153487609	SINE|MIR|MIR3	-	chrX	153470857	153487705	STRG.141355.13	-	153470857,153487533	153471145,153487705	0.817143
thoracic_aorta_male_adult_37_years	chr4	119235316	119235411	119235337	+	RAMPAGE_only	4	4	30	1.114048	4.423252	chr4	119235263	119235577	SINE|Alu|AluJr	-	chr4	119212742	119237311	STRG.38509.12	+	119212742,119217549,119220115	119214222,119217673,119237311	0.733333
thoracic_aorta_male_adult_37_years	chr1	186301453	186301487	186301453	+	RAMPAGE_only	2	2	10	0.371349	3.121928	chr1	186301400	186301529	DNA|TcMar-Tigger|Tigger16b	+	chr1	186296278	186306478	STRG.9370.8	+	186296278,186296845,186301591,186304793,186306317	186296293,186300213,186304257,186304922,186306478	0.900000
thoracic_aorta_male_adult_37_years	chr12	124332526	124332546	124332526	-	High_confidence	3	3	9	0.334214	3.000000	chr12	124332509	124332545	LINE|CR1|L3	-	chr12	124328531	124333256	NCOR2|ENST00000440337.3	-	124328531,124330844,124332318,124333129	124329157,124330898,124332467,124333256	0.666667
thoracic_aorta_male_adult_37_years	chr21	38680567	38680571	38680567	-	RAMPAGE_only	3	3	6	0.222810	2.584963	chr21	38680349	38680772	LTR|ERVL-MaLR|MLT1B	-	chr21	38367260	38661780	ERG|NM_001243432.2	-	38367260,38390994,38391658,38392375,38400573,38402556,38403505,38423409,38445403,38575661,38584843,38661657	38367648,38391042,38391715,38392444,38400645,38402637,38403709,38423561,38445621,38575747,38584945,38661780	0.500000
thoracic_aorta_male_adult_37_years	chr22	18149844	18149864	18149844	+	High_confidence	4	6	16	0.594159	3.640224	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.937500
thoracic_aorta_male_adult_37_years	chr19	54617130	54617148	54617147	+	High_confidence	5	5	14	0.519889	3.700440	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.642857
thoracic_aorta_male_adult_37_years	chr2	174561864	174561999	174561864	-	RAMPAGE_only	13	14	71	2.636581	3.449219	chr2	174561764	174562035	DNA|hAT-Charlie|MER33	+	chr2	174559571	174634579	WIPF1|ENST00000392547.6	-	174559571,174567069,174567860,174571675,174575203,174581309,174585522,174634517	174562602,174567183,174568073,174572446,174575380,174581439,174585611,174634579	0.985915
thoracic_aorta_male_adult_37_years	chr2	201115931	201115960	201115931	+	High_confidence	4	4	11	0.408484	3.095795	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.909091
thoracic_aorta_male_adult_37_years	chr8	61646995	61647065	61647064	-	High_confidence	6	7	19	0.705564	3.681881	chr8	61646951	61647212	LINE|L2|L2a	+	chr8	61626140	61646872	ASPH|ENST00000519678.5	-	61626140,61633682,61637946,61642887,61643385,61643944,61644599,61646749	61626280,61633727,61638003,61642920,61643433,61644001,61644632,61646872	0.894737
thoracic_aorta_male_adult_37_years	chr20	44887709	44887735	44887734	+	RAMPAGE_only	5	5	11	0.408484	2.913977	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885739	44901833	YWHAB|ENST00000428262.1	+	44885739,44887544,44901530	44885886,44887742,44901833	0.909091
thoracic_aorta_male_adult_37_years	chr17	40088115	40088139	40088115	+	RAMPAGE_only	3	3	9	0.334214	2.725481	chr17	40088060	40088121	SINE|MIR|MIR	+	chr17	40068902	40089730	THRA|ENST00000546243.5	+	40068902,40074191,40076870,40077507,40083834,40084609,40086706,40088241,40089205	40069007,40074541,40076938,40077608,40083982,40084815,40086853,40088500,40089730	1.000000
thoracic_aorta_male_adult_37_years	chr10	95437783	95437827	95437815	-	RAMPAGE_only	5	8	38	1.411128	4.859641	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95315058	95441135	SORBS1|ENST00000354106.7	-	95315058,95318319,95321962,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95432576,95434717,95437555,95441135	0.552632
thoracic_aorta_male_adult_37_years	chr14	50756576	50756623	50756600	-	RAMPAGE_only	5	5	17	0.631294	3.500000	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.823529
thoracic_aorta_male_adult_37_years	chr10	35449700	35449732	35449725	+	RAMPAGE_only	7	12	44	1.633937	5.088630	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.704545
thoracic_aorta_male_adult_37_years	chr12	120168687	120168701	120168687	-	High_confidence	2	3	7	0.259945	2.521641	chr12	120168618	120168722	LINE|L2|L2b	+	chr12	120164670	120168414	GCN1|ENST00000551549.1	-	120164670,120168207	120164721,120168414	0.571429
thoracic_aorta_male_adult_37_years	chr7	94424175	94424203	94424175	+	RAMPAGE_only	2	3	9	0.334214	2.725481	chr7	94424087	94424233	SINE|tRNA-RTE|MamSINE1	+	chr7	94422470	94430688	COL1A2|ENST00000481570.5	+	94422470,94425609,94425749,94425997,94426422,94427187,94428292,94429187	94425224,94425663,94425857,94426051,94427061,94427885,94428477,94430688	1.000000
thoracic_aorta_male_adult_37_years	chr6	77369106	77369167	77369166	-	High_confidence	29	47	181	6.721424	6.028181	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77350365	77369158	STRG.52828.3	-	77350365,77368885	77350734,77369158	0.613260
thoracic_aorta_male_adult_37_years	chr22	39021146	39021156	39021155	+	High_confidence	6	7	10	0.371349	3.121928	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
thoracic_aorta_male_adult_37_years	chr12	7463530	7463532	7463531	-	RAMPAGE_only	4	8	8	0.297080	2.750000	chr12	7463116	7464875	LINE|L1|L1PA13	-	chr12	7457753	7467863	STRG.91245.1	-	7457753,7462398	7462299,7467863	1.000000
thoracic_aorta_male_adult_37_years	chr2	108451065	108451087	108451086	+	RAMPAGE_only	3	3	7	0.259945	2.807355	chr2	108451073	108451151	LINE|RTE-BovB|MamRTE1	-	chr2	108449883	108472899	GCC2|ENST00000409896.1	+	108449883,108451027,108452398,108468979,108469650,108472826	108449994,108451112,108452466,108469084,108472116,108472899	1.000000
thoracic_aorta_male_adult_37_years	chr17	8480583	8480693	8480692	-	High_confidence	9	11	71	2.636581	5.804213	chr17	8480581	8480943	LINE|L2|L2	+	chr17	8478311	8481445	MYH10|ENST00000476737.1	-	8478311,8480109,8480401,8481321	8478446,8480318,8480525,8481445	0.802817
thoracic_aorta_male_adult_37_years	chr16	15717519	15717538	15717537	-	RAMPAGE_only	3	4	10	0.371349	3.121928	chr16	15717512	15717802	SINE|Alu|AluSz	+	chr16	15712889	15724328	MYH11|ENST00000576164.5	-	15712889,15715163,15717139,15719584,15720150,15720838,15724160	15715081,15715272,15719308,15719713,15720312,15721634,15724328	1.000000
thoracic_aorta_male_adult_37_years	chr16	67183295	67183296	67183295	-	High_confidence	4	4	7	0.259945	2.807355	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67176729	67183941	KIAA0895L|ENST00000563902.1	-	67176729,67178009,67178198,67179429,67179814,67180040,67183261	67176975,67178107,67178504,67179562,67179958,67180666,67183941	0.857143
thoracic_aorta_male_adult_37_years	chr12	7137061	7137098	7137097	+	RAMPAGE_only	11	11	22	0.816969	4.186704	chr12	7137127	7137213	SINE|MIR|MIR1_Amn	+	chr12	7138681	7143198	CLSTN3|ENST00000544584.1	+	7138681,7141241,7142085,7142868,7143162	7138816,7141404,7142139,7143026,7143198	0.863636
thoracic_aorta_male_adult_37_years	chr22	37755641	37755658	37755641	+	RAMPAGE_only	8	9	23	0.854104	4.175736	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	0.782609
thoracic_aorta_male_adult_37_years	chrY	3002985	3002990	3002989	+	High_confidence	9	9	22	0.816969	4.368523	chrY	3002992	3005218	LTR|ERV1|HERV3-int	+	chrY	3002901	3008147	STRG.141508.1	+	3002901,3005799	3005361,3008147	0.818182
thoracic_aorta_male_adult_37_years	chr21	41426087	41426090	41426089	+	High_confidence	3	5	8	0.297080	2.807355	chr21	41426026	41426113	DNA|hAT-Charlie|MER5A	-	chr21	41426030	41432147	MX1|ENST00000419044.5	+	41426030,41427205,41427754,41430532,41432049	41426161,41427304,41427866,41430608,41432147	0.875000
thoracic_aorta_male_adult_37_years	chr10	102142819	102142822	102142821	+	High_confidence	3	6	6	0.222810	2.584963	chr10	102142715	102142850	SINE|Alu|FLAM_A	-	chr10	102142954	102144834	PPRC1|ENST00000462933.1	+	102142954,102144249	102143098,102144834	0.666667
thoracic_aorta_male_adult_37_years	chr1	45616352	45616393	45616392	+	High_confidence	6	7	18	0.668429	3.683542	chr1	45616440	45616559	SINE|Alu|FLAM_C	+	chr1	45617236	45618246	NASP|ENST00000472408.1	+	45617236,45618060	45617591,45618246	0.944444
thoracic_aorta_male_adult_37_years	chr2	217903766	217903891	217903800	-	High_confidence	39	44	227	8.429631	5.529410	chr2	217903613	217903790	LINE|CR1|L3b	-	chr2	217859228	217903813	TNS1|ENST00000310858.10	-	217859228,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217903602	217859701,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217903813	0.696035
thoracic_aorta_male_adult_37_years	chr3	99962054	99962059	99962054	+	RAMPAGE_only	2	2	6	0.222810	2.584963	chr3	99961963	99962273	LINE|L2|L2c	-	chr3	99817882	100172404	CMSS1|ENST00000491299.5	+	99817882,100141529,100146972,100160429,100162302,100166334,100167737,100171838,100172315	99818043,100141645,100147061,100160501,100162432,100166394,100167840,100171899,100172404	0.833333
thoracic_aorta_male_adult_37_years	chr22	28724885	28724886	28724885	-	High_confidence	7	7	7	0.259945	2.807355	chr22	28724569	28724864	SINE|Alu|AluSp	-	chr22	28699763	28725248	CHEK2|ENST00000439346.5	-	28699763,28703504,28710005,28711908,28724976,28725242	28699937,28703566,28710059,28712017,28725124,28725248	0.857143
thoracic_aorta_male_adult_37_years	chr15	68320658	68320685	68320681	-	RAMPAGE_only	3	3	10	0.371349	2.947703	chr15	68320681	68320826	LINE|RTE-X|L4_C_Mam	+	chr15	68302766	68359104	STRG.109290.4	-	68302766,68303771,68307347,68307585,68310993,68311289,68312772,68313778,68315650,68317264,68320184,68325130,68326653,68328095,68330980,68331858,68332337,68335696,68339499,68348829,68350616,68351257,68357150,68358457	68303130,68303885,68307443,68307696,68311080,68311403,68312863,68313942,68315727,68317363,68321503,68325241,68326796,68328262,68331111,68332062,68332478,68335845,68339644,68348900,68350782,68351402,68357299,68359104	0.900000
thoracic_aorta_male_adult_37_years	chr15	75626304	75626305	75626304	-	High_confidence	7	7	9	0.334214	2.500000	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.888889
thoracic_aorta_male_adult_37_years	chr20	51627610	51627655	51627610	-	RAMPAGE_only	11	11	29	1.076913	4.418157	chr20	51627270	51627593	LINE|L2|L2a	-	chr20	51596513	51768328	ATP9A|ENST00000311637.9	-	51596513,51604816,51607526,51608517,51610100,51613676,51617489,51618661,51618953,51622073,51625191,51627599,51628979,51639342,51656937,51669996,51671114,51674152,51676131,51712965,51725818,51729833,51768301	51601347,51605020,51607584,51608626,51610165,51613832,51617554,51618806,51619043,51622172,51625362,51627683,51629072,51639504,51657150,51670109,51671257,51674313,51676208,51713074,51725932,51729978,51768328	0.931034
thoracic_aorta_male_adult_37_years	chr1	9239843	9239873	9239843	+	High_confidence	4	4	13	0.482754	3.546594	chr1	9239801	9239853	LINE|Penelope|Penelope1_Vert	+	chr1	9239843	9271337	H6PD|NM_001282587.1	+	9239843,9244924,9246965,9262058,9263508	9240018,9245561,9247083,9262328,9271337	0.692308
thoracic_aorta_male_adult_37_years	chr1	15758286	15758342	15758297	+	High_confidence	9	9	46	1.708207	4.986189	chr1	15758111	15758311	SINE|MIR|MIRb	-	chr1	15758418	15786594	FBLIM1|ENST00000375766.7	+	15758418,15764495,15764963,15767375,15768527,15770408,15774617,15777169,15784547	15758848,15764685,15765233,15767563,15768630,15770578,15774796,15777287,15786594	0.978261
thoracic_aorta_male_adult_37_years	chr10	51506870	51506998	51506870	+	RAMPAGE_only	25	27	187	6.944234	4.903579	chr10	51506023	51507313	LINE|L1|L1PA4	+	chr10	51074569	51512165	STRG.80527.10	+	51074569,51153163,51467722,51479498	51074901,51153330,51479455,51512165	0.983957
thoracic_aorta_male_adult_37_years	chr20	38985938	38985969	38985968	+	RAMPAGE_only	5	5	15	0.557024	3.506891	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	1.000000
thoracic_aorta_male_adult_37_years	chrX	153463073	153463094	153463088	-	RAMPAGE_only	2	2	8	0.297080	2.521641	chrX	153463046	153463145	SINE|MIR|MIRb	-	chrX	153447669	153457191	HAUS7|ENST00000484394.5	-	153447669,153454393,153456264,153456492,153457136	153447909,153455766,153456364,153456651,153457191	0.875000
thoracic_aorta_male_adult_37_years	chr11	114297619	114297627	114297626	+	RAMPAGE_only	3	5	7	0.259945	2.521641	chr11	114297481	114297786	SINE|Alu|AluJr4	-	chr11	114059592	114312515	STRG.89637.1	+	114059592,114063210,114156336,114186951,114242166,114247197,114250325,114293681	114061561,114064568,114156434,114187038,114242337,114247365,114293447,114312515	1.000000
thoracic_aorta_male_adult_37_years	chr20	34369398	34369411	34369410	+	RAMPAGE_only	4	5	12	0.445619	3.277613	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.916667
thoracic_aorta_male_adult_37_years	chr19	18938744	18938746	18938745	-	High_confidence	4	7	9	0.334214	2.750000	chr19	18938564	18938695	SINE|MIR|MIR3	-	chr19	18929438	18938982	HOMER3|ENST00000594439.5	-	18929438,18931324,18931508,18931975,18932923,18938352,18938727,18938968	18929634,18931411,18931625,18932132,18933045,18938484,18938884,18938982	0.555556
thoracic_aorta_male_adult_37_years	chr5	160412454	160412478	160412477	-	RAMPAGE_only	4	4	9	0.334214	3.169925	chr5	160412010	160412428	LINE|L1|L1ME4c	-	chr5	160406348	160408421	SLU7|ENST00000520841.1	-	160406348,160407475,160407745,160407970,160408328	160406629,160407615,160407813,160408068,160408421	0.888889
thoracic_aorta_male_adult_37_years	chr11	93499283	93499313	93499303	-	High_confidence	8	8	23	0.854104	3.422578	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	0.869565
thoracic_aorta_male_adult_37_years	chr7	22728387	22728415	22728414	+	High_confidence	4	4	11	0.408484	3.027169	chr7	22728374	22728545	SINE|MIR|MIRb	-	chr7	22728499	22729788	IL6|ENST00000464710.1	+	22728499,22729513	22728806,22729788	0.636364
thoracic_aorta_male_adult_37_years	chr3	114380816	114380841	114380840	-	RAMPAGE_only	2	3	9	0.334214	2.750000	chr3	114380802	114381001	SINE|MIR|MIR3	+	chr3	114338652	114383641	ZBTB20|ENST00000474710.5	-	114338652,114350273,114380216,114380776,114383615	114339426,114351878,114380404,114380940,114383641	0.888889
thoracic_aorta_male_adult_37_years	chr5	37121921	37121972	37121971	-	RAMPAGE_only	3	4	11	0.408484	2.646439	chr5	37121881	37122050	SINE|Alu|AluSq2	-	chr5	37114500	37139370	STRG.42019.8	-	37114500,37120215,37121616,37125243,37138719,37139339	37115049,37120340,37122488,37125409,37138848,37139370	0.818182
thoracic_aorta_male_adult_37_years	chr9	76629164	76629262	76629164	-	RAMPAGE_only	5	5	55	2.042422	5.251916	chr9	76628851	76629142	SINE|Alu|AluJb	-	chr9	76617053	76710237	STRG.73975.6	-	76617053,76636470,76637417,76638185,76641971,76644738,76652482,76655422,76703336,76704760	76629290,76636557,76637549,76638288,76641980,76644912,76652683,76655502,76704099,76710237	0.509091
thoracic_aorta_male_adult_37_years	chr3	146222305	146222344	146222305	-	High_confidence	4	5	17	0.631294	3.690117	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146206586	146222371	PLSCR4|ENST00000498625.1	-	146206586,146220814,146222064	146206761,146220925,146222371	0.764706
thoracic_aorta_male_adult_37_years	chr9	97563794	97563813	97563794	+	RAMPAGE_only	2	2	8	0.297080	2.807355	chr9	97563706	97563887	SINE|MIR|MIRc	-	chr9	97555434	97601254	TMOD1|ENST00000375175.1	+	97555434,97562731,97564037,97565847,97568893,97591290,97599633	97555711,97562821,97564168,97565955,97569037,97591435,97601254	0.875000
thoracic_aorta_male_adult_37_years	chr2	95834120	95834135	95834120	-	RAMPAGE_only	5	5	11	0.408484	3.121928	chr2	95834037	95834122	LINE|L1|L1PA12	-	chr2	95831038	95836209	STRG.17195.2	-	95831038,95835300	95835197,95836209	0.818182
thoracic_aorta_male_adult_37_years	chr2	113117970	113117971	113117970	+	High_confidence	4	4	7	0.259945	2.807355	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.857143
thoracic_aorta_male_adult_37_years	chr5	34918370	34918379	34918370	+	RAMPAGE_only	5	5	11	0.408484	2.521928	chr5	34918350	34918397	LINE|CR1|L3b	+	chr5	34915751	34925345	BRIX1|ENST00000506023.1	+	34915751,34922216,34922538,34922694,34923000,34923132,34924846,34925225	34915897,34922287,34922588,34922768,34923051,34923234,34924975,34925345	0.909091
thoracic_aorta_male_adult_37_years	chr11	3093133	3093218	3093217	-	RAMPAGE_only	4	4	33	1.225453	4.220168	chr11	3093151	3093289	LINE|CR1|L3	-	chr11	3087115	3094879	OSBPL5|ENST00000478260.5	-	3087115,3089845,3090557,3092431,3092866,3093526,3093745,3094236	3088343,3089948,3090696,3092558,3093052,3093663,3093835,3094879	0.939394
thoracic_aorta_male_adult_37_years	chr14	101731413	101731422	101731413	+	High_confidence	8	8	16	0.594159	3.506891	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.625000
thoracic_aorta_male_adult_37_years	chr1	159005961	159005965	159005961	+	High_confidence	21	22	32	1.188318	4.413716	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.531250
thoracic_aorta_male_adult_37_years	chr18	36602740	36602759	36602758	+	RAMPAGE_only	3	3	7	0.259945	2.807355	chr18	36602780	36603226	LTR|ERVL-MaLR|MLT1C	+	chr18	36594785	36780055	FHOD3|ENST00000592930.5	+	36594785,36602673,36611951,36625510,36681435,36687127,36693208,36709094,36717831,36730645,36740655,36742736,36744031,36746944,36755118,36760607,36769264,36779447	36594898,36602768,36612095,36625749,36681570,36687178,36693423,36709391,36718715,36730804,36740838,36742856,36744193,36747135,36755311,36760782,36769426,36780055	0.857143
thoracic_aorta_male_adult_37_years	chr5	109383417	109383465	109383446	-	High_confidence	7	9	38	1.411128	4.520257	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.947368
thoracic_aorta_male_adult_37_years	chr1	155478111	155478216	155478111	-	RAMPAGE_only	9	9	35	1.299723	4.346832	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.885714
thoracic_aorta_male_adult_37_years	chr19	51795144	51795187	51795186	+	High_confidence	6	6	30	1.114048	4.256565	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	1.000000
thoracic_aorta_male_adult_37_years	chr3	28347646	28347654	28347653	-	High_confidence	13	13	29	1.076913	4.651084	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.896552
thoracic_aorta_male_adult_37_years	chr1	223759086	223759087	223759086	+	High_confidence	6	6	8	0.297080	2.750000	chr1	223759082	223759137	SINE|Alu|AluJr	-	chr1	223758225	223776018	CAPN2|ENST00000487223.5	+	223758225,223761580,223762185,223764149,223766366,223769840,223770446,223771808,223772180,223774833	223759481,223761617,223762251,223764207,223766431,223769909,223770525,223771925,223772239,223776018	0.875000
thoracic_aorta_male_adult_37_years	chr2	143070999	143071023	143070999	+	RAMPAGE_only	9	10	20	0.742699	3.787144	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143091361	143238352	ARHGAP15|ENST00000409869.5	+	143091361,143092156,143155476,143202133,143216383,143228580,143235945	143091422,143092258,143155655,143202202,143216445,143228668,143238352	0.600000
thoracic_aorta_male_adult_37_years	chr8	133499157	133499187	133499186	-	High_confidence	2	2	7	0.259945	2.521641	chr8	133499058	133499257	SINE|MIR|MIRb	+	chr8	133475883	133499361	ST3GAL1|ENST00000523855.1	-	133475883,133476277,133499134	133476074,133476600,133499361	0.857143
thoracic_aorta_male_adult_37_years	chr12	31570200	31570201	31570200	-	High_confidence	10	10	13	0.482754	2.918296	chr12	31569913	31570216	SINE|Alu|AluSc8	+	chr12	31565305	31570388	STRG.92947.1	-	31565305	31570388	0.846154
thoracic_aorta_male_adult_37_years	chr14	102370757	102370797	102370760	+	RAMPAGE_only	5	7	18	0.668429	3.690117	chr14	102370462	102370850	LINE|L2|L2b	-	chr14	102363078	102465671	TECPR2|ENST00000558678.1	+	102363078,102376649,102407337,102408487,102414635,102424978,102428249,102431795,102434234,102438021,102440435,102443646,102445805,102449628,102450559,102452393,102465140	102363116,102376940,102407466,102408619,102414793,102425291,102428382,102432128,102435211,102438205,102440609,102443827,102445947,102449869,102450649,102452627,102465671	0.500000
thoracic_aorta_male_adult_37_years	chr22	35381325	35381342	35381325	+	High_confidence	6	7	10	0.371349	2.921928	chr22	35381303	35381356	SINE|MIR|MIRb	+	chr22	35381092	35386908	HMOX1|ENST00000481190.1	+	35381092,35383105,35386684	35381329,35383226,35386908	0.600000
thoracic_aorta_male_adult_37_years	chr9	110170695	110170776	110170695	+	RAMPAGE_only	79	80	197	7.315583	5.825237	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	0.994924
thoracic_aorta_male_adult_37_years	chr4	48546128	48546144	48546139	-	High_confidence	7	7	14	0.519889	3.546594	chr4	48546053	48546089	LINE|CR1|X7C_LINE	-	chr4	48521093	48546759	FRYL|ENST00000513401.5	-	48521093,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066	48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546759	0.714286
thoracic_aorta_male_adult_37_years	chr3	8569881	8569934	8569911	+	RAMPAGE_only	9	9	33	1.225453	4.518397	chr3	8569714	8569995	SINE|Alu|AluJb	+	chr3	8501706	8574673	LMCD1|ENST00000157600.7	+	8501706,8532736,8537184,8548567,8565431,8567439	8501980,8532825,8537440,8548903,8565647,8574673	0.939394
thoracic_aorta_male_adult_37_years	chr4	119217569	119217625	119217569	+	RAMPAGE_only	10	10	43	1.596802	5.083128	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212742	119294746	STRG.38509.3	+	119212742,119214069,119217549,119239217,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119212873,119214222,119217673,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119294746	0.697674
thoracic_aorta_male_adult_37_years	chr3	129399238	129399252	129399251	-	High_confidence	4	4	9	0.334214	2.750000	chr3	129399072	129399375	SINE|Alu|AluSx1	+	chr3	129382921	129399405	RPL32P3|ENST00000510078.5	-	129382921,129393634,129396216,129397039,129399007	129384218,129393795,129396420,129397140,129399405	0.888889
thoracic_aorta_male_adult_37_years	chr1	162597815	162597850	162597849	+	High_confidence	9	12	33	1.225453	4.386143	chr1	162597899	162598081	LINE|L1|L1MA7	+	chr1	162597240	162599799	UAP1|ENST00000486089.1	+	162597240,162599270	162597858,162599799	0.787879
thoracic_aorta_male_adult_37_years	chr2	101281868	101281974	101281868	-	RAMPAGE_only	3	3	23	0.854104	3.880180	chr2	101281489	101281823	SINE|Alu|AluJo	-	chr2	101259861	101308696	STRG.17619.1	-	101259861,101260348,101261223,101271344,101273126,101274030,101286080,101288972,101294013,101294930	101260041,101260664,101261532,101271744,101273341,101282057,101286177,101289055,101294082,101308696	0.913043
thoracic_aorta_male_adult_37_years	chr17	68126005	68126046	68126005	+	RAMPAGE_only	2	2	13	0.482754	3.188722	chr17	68125981	68126285	SINE|Alu|AluJb	-	chr17	68101567	68129586	STRG.119519.1	+	68101567,68102942,68114421,68125389,68125584	68101959,68103058,68114525,68125480,68129586	0.923077
thoracic_aorta_male_adult_37_years	chr11	64236935	64236944	64236935	+	High_confidence	5	5	9	0.334214	2.947703	chr11	64236796	64237085	SINE|Alu|AluSq	+	chr11	64237126	64238787	VEGFB|ENST00000543462.1	+	64237126,64237520,64238355	64237222,64237655,64238787	0.555556
thoracic_aorta_male_adult_37_years	chr3	98733157	98733185	98733170	+	High_confidence	2	3	11	0.408484	2.921928	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.818182
thoracic_aorta_male_adult_37_years	chr4	48012935	48012945	48012935	-	High_confidence	4	5	12	0.445619	3.251629	chr4	48012591	48013262	LTR|ERV1|MER4-int	-	chr4	47935976	48012944	CNGA1|NM_000087.3	-	47935976,47940762,47942040,47943180,47943370,47949832,47951352,47952582,47981392,48010793,48012888	47937829,47940869,47942148,47943288,47943412,47949895,47951469,47952703,47981500,48010893,48012944	0.833333
thoracic_aorta_male_adult_37_years	chr2	71379923	71379949	71379948	+	High_confidence	3	3	6	0.222810	2.584963	chr2	71379856	71379996	DNA|TcMar-Tigger|MER44D	+	chr2	71379515	71380720	ZNF638|ENST00000486494.1	+	71379515,71380512	71380280,71380720	0.666667
thoracic_aorta_male_adult_37_years	chr10	130171634	130171635	130171634	+	RAMPAGE_only	4	4	6	0.222810	2.584963	chr10	130171683	130171980	SINE|Alu|AluJb	+	chr10	130179373	130180382	GLRX3|ENST00000496195.1	+	130179373,130180112	130179420,130180382	0.500000
thoracic_aorta_male_adult_37_years	chr11	108223508	108223517	108223516	+	High_confidence	5	5	10	0.371349	3.121928	chr11	108223533	108223589	SINE|MIR|MIR	+	chr11	108223102	108236534	ATM|ENST00000530958.5	+	108223102,108227775,108229177,108235669	108227696,108227888,108229323,108236534	1.000000
thoracic_aorta_male_adult_37_years	chr6	35474524	35474738	35474524	-	RAMPAGE_only	14	14	159	5.904455	5.873743	chr6	35474383	35474575	SINE|MIR|MIRb	+	chr6	35473784	35487041	STRG.51085.5	-	35473784,35475565,35477310,35478274,35478433	35475488,35476435,35477372,35478324,35487041	1.000000
thoracic_aorta_male_adult_37_years	chr19	45450729	45450758	45450734	-	High_confidence	6	6	13	0.482754	3.584963	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.692308
thoracic_aorta_male_adult_37_years	chr16	89672748	89672773	89672748	+	High_confidence	4	4	12	0.445619	3.418296	chr16	89672500	89673437	LTR|ERV1|MER4-int	+	chr16	89672939	89673462	STRG.115213.1	+	89672939	89673462	0.583333
thoracic_aorta_male_adult_37_years	chr5	177484865	177485140	177484865	-	RAMPAGE_only	21	27	251	9.320870	6.621096	chr5	177484314	177485260	LINE|L2|L2a	+	chr5	177483397	177492572	STRG.48997.18	-	177483397,177483866,177484069,177489392,177489770,177490869,177491009,177491403,177492404,177492525	177483730,177483982,177488248,177489627,177489832,177490906,177491146,177491420,177492435,177492572	0.996016
thoracic_aorta_male_adult_37_years	chr2	96638022	96638046	96638022	-	High_confidence	6	6	14	0.519889	2.873141	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.500000
thoracic_aorta_male_adult_37_years	chr7	102973265	102973272	102973265	-	High_confidence	5	5	9	0.334214	2.947703	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102883571	102973219	FBXL13|ENST00000477915.5	-	102883571,102884213,102913085,102926273,102963532,102968021,102973149	102883685,102884312,102913215,102926374,102963665,102968117,102973219	0.666667
thoracic_aorta_male_adult_37_years	chr22	41653666	41653685	41653666	+	RAMPAGE_only	1	1	6	0.222810	2.584963	chr22	41653710	41653849	DNA|hAT-Charlie|MER5A	+	chr22	41656952	41661699	XRCC6|ENST00000478914.1	+	41656952,41658251,41661330	41657032,41658352,41661699	0.833333
thoracic_aorta_male_adult_37_years	chr2	227534915	227535001	227534916	+	RAMPAGE_only	14	19	52	1.931017	4.221985	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.884615
thoracic_aorta_male_adult_37_years	chr11	57794056	57794070	57794069	+	RAMPAGE_only	4	7	13	0.482754	3.418296	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.923077
thoracic_aorta_male_adult_37_years	chr2	200889279	200889318	200889293	-	High_confidence	5	5	30	1.114048	4.735926	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.500000
thoracic_aorta_male_adult_37_years	chr11	71480175	71480253	71480175	+	High_confidence	7	7	36	1.336858	3.682049	chr11	71480150	71480472	SINE|Alu|AluSq2	-	chr11	71480148	71490876	NADSYN1|ENST00000526039.6	+	71480148,71480754,71481355,71482000,71482848,71484311,71485541,71490844	71480274,71480879,71481404,71482025,71483017,71484447,71485648,71490876	0.972222
thoracic_aorta_male_adult_37_years	chr10	51644928	51645026	51645015	+	RAMPAGE_only	10	10	41	1.522533	4.418723	chr10	51644797	51645120	SINE|Alu|AluSz	-	chr10	51554385	51670555	STRG.80529.1	+	51554385,51595245	51595208,51670555	0.926829
thoracic_aorta_male_adult_37_years	chr1	156252930	156252931	156252930	-	High_confidence	6	6	8	0.297080	2.807355	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.625000
thoracic_aorta_male_adult_37_years	chr16	70590328	70590335	70590328	+	RAMPAGE_only	11	11	22	0.816969	4.106603	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.909091
thoracic_aorta_male_adult_37_years	chr15	42638541	42638558	42638557	+	RAMPAGE_only	3	5	9	0.334214	2.725481	chr15	42638526	42638654	SINE|MIR|MIR3	-	chr15	42629841	42670050	STARD9|ENST00000568493.1	+	42629841,42634855,42637906,42638025,42638699,42651015,42652519,42661157,42662793,42663280,42669157	42630146,42634972,42637939,42638087,42638812,42651085,42652592,42661225,42662891,42663917,42670050	0.666667
thoracic_aorta_male_adult_37_years	chr12	102291795	102291796	102291795	+	RAMPAGE_only	12	14	16	0.594159	3.773557	chr12	102291614	102291972	LTR|ERVL-MaLR|THE1B	+	chr12	102304354	102463491	LINC02456|ENST00000635615.1	+	102304354,102304631,102315310,102348882,102423070,102462727	102304448,102304756,102315490,102348932,102423180,102463491	0.687500
thoracic_aorta_male_adult_37_years	chr4	147864611	147864612	147864611	+	RAMPAGE_only	7	7	8	0.297080	2.807355	chr4	147864565	147864786	DNA|hAT-Charlie|MER58A	-	chr4	147860982	148072776	ARHGAP10|ENST00000506054.5	+	147860982,147875020,147879231,147881837,147906637,147909731,147913073,147939824,147946616,147955315,147965023,147966679,148023262,148046891,148063147,148064415,148071992	147866816,147875150,147879338,147881932,147906719,147909777,147913139,147939899,147946704,147955374,147965129,147966839,148023413,148047051,148063300,148064507,148072776	0.875000
thoracic_aorta_male_adult_37_years	chr12	21818179	21818247	21818179	-	RAMPAGE_only	6	6	33	1.225453	3.513202	chr12	21817882	21818136	LINE|L1|L1PA8A	-	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	0.969697
thoracic_aorta_male_adult_37_years	chr5	77491290	77491310	77491290	-	High_confidence	4	5	9	0.334214	2.947703	chr5	77491010	77491450	LTR|ERV1|LTR7	+	chr5	77453865	77491285	WDR41|ENST00000504895.5	-	77453865,77459061,77463094,77464760,77489456,77491192	77453928,77459124,77463226,77464809,77489572,77491285	0.777778
thoracic_aorta_male_adult_37_years	chr19	49086519	49086547	49086546	+	High_confidence	111	112	309	11.474696	5.779426	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.941748
thoracic_aorta_male_adult_37_years	chr3	52482666	52482693	52482666	+	RAMPAGE_only	4	4	13	0.482754	3.584963	chr3	52482568	52482694	DNA|TcMar-Tc2|Kanga1c	+	chr3	52455616	52493036	STRG.27409.2	+	52455616,52457842,52458661,52470858,52471813,52472302,52473733,52476446,52477573,52478096,52478448,52479748,52480183,52480878,52485777,52487195,52489335,52490074,52490704,52491351,52491871	52455734,52457926,52458844,52470907,52471977,52472398,52473829,52476599,52477642,52478282,52478577,52479862,52480295,52484637,52485827,52488605,52489678,52490231,52490833,52491513,52493036	0.923077
thoracic_aorta_male_adult_37_years	chr14	99897266	99897289	99897283	+	High_confidence	2	3	9	0.334214	2.947703	chr14	99897314	99897417	SINE|Alu|FLAM_A	+	chr14	99898232	99911551	EML1|ENST00000554386.1	+	99898232,99900928,99909344,99910241,99911421	99898302,99901039,99909479,99910341,99911551	0.555556
thoracic_aorta_male_adult_37_years	chr14	100829553	100829555	100829554	+	High_confidence	7	10	12	0.445619	2.663533	chr14	100829596	100829639	LINE|L2|L2b	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.833333
thoracic_aorta_male_adult_37_years	chr20	48707042	48707066	48707042	-	RAMPAGE_only	37	41	65	2.413771	5.413910	chr20	48706744	48707383	LTR|ERVL|LTR67B	-	chr20	48624251	48827883	PREX1|ENST00000371941.3	-	48624251,48627547,48627860,48629448,48630727,48632276,48632495,48634675,48636462,48637710,48639765,48642167,48642406,48644408,48645850,48649299,48649995,48650893,48651395,48652585,48653360,48655289,48657039,48658135,48659918,48666282,48676192,48679359,48679650,48681234,48688656,48690946,48692671,48700752,48708259,48726289,48734545,48745024,48747808,48827641	48625927,48627615,48627963,48629621,48630794,48632391,48632639,48634775,48636683,48637752,48639894,48642258,48642489,48644497,48646057,48649576,48650206,48651055,48651583,48652706,48653497,48655375,48657188,48658228,48660061,48666355,48676268,48679409,48679754,48681335,48688804,48691096,48692790,48700886,48708421,48726391,48734650,48745147,48747880,48827883	0.892308
thoracic_aorta_male_adult_37_years	chr11	20114333	20114381	20114380	+	High_confidence	4	4	10	0.371349	2.725481	chr11	20114308	20114406	SINE|MIR|MIRb	-	chr11	20114382	20118282	NAV2|ENST00000528923.1	+	20114382,20118132	20114795,20118282	0.600000
thoracic_aorta_male_adult_37_years	chr16	28952140	28952153	28952152	+	RAMPAGE_only	5	7	11	0.408484	3.121928	chr16	28952153	28952214	DNA|hAT-Ac|OldhAT1	+	chr16	28950996	28966465	NFATC2IP|NM_032815.3	+	28950996,28952131,28954564,28955977,28956150,28958716,28958990,28963704	28951398,28952204,28954682,28956058,28956337,28958861,28959100,28966465	0.636364
thoracic_aorta_male_adult_37_years	chr11	65431602	65432065	65432064	+	RAMPAGE_only	70	72	741	27.516990	7.184560	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998650
thoracic_aorta_male_adult_37_years	chr17	5772217	5772218	5772217	+	High_confidence	16	16	16	0.594159	3.625000	chr17	5771061	5772733	LTR|ERV1|LTR12C	+	chr17	5772227	5772605	STRG.115484.1	+	5772227	5772605	0.562500
thoracic_aorta_male_adult_37_years	chr20	45833293	45833310	45833293	-	High_confidence	8	9	26	0.965508	3.636842	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.923077
thoracic_aorta_male_adult_37_years	chr5	149425582	149425994	149425684	+	RAMPAGE_only	306	310	2134	79.245962	6.548036	chr5	149425592	149425831	DNA|hAT-Charlie|MER113	-	chr5	149406963	149436616	STRG.48061.1	+	149406963,149421480,149424089,149431575,149433812	149407078,149421601,149431481,149433705,149436616	1.000000
thoracic_aorta_male_adult_37_years	chr1	202582562	202582607	202582571	+	RAMPAGE_only	6	6	25	0.928373	4.483856	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.960000
thoracic_aorta_male_adult_37_years	chr20	49507090	49507135	49507090	-	RAMPAGE_only	7	7	63	2.339501	4.658656	chr20	49506783	49507064	DNA|hAT-Charlie|MER102b	-	chr20	49503873	49568146	PTGIS|ENST00000244043.4	-	49503873,49511027,49513079,49514226,49524057,49539569,49544304,49547840,49550065,49568042	49508064,49511179,49513261,49514395,49524239,49539721,49544448,49548019,49550189,49568146	1.000000
thoracic_aorta_male_adult_37_years	chr10	51515798	51515810	51515798	+	RAMPAGE_only	3	4	11	0.408484	2.921928	chr10	51515716	51516590	LTR|ERV1|LTR28B	-	chr10	51512348	51520186	STRG.80534.1	+	51512348	51520186	0.909091
thoracic_aorta_male_adult_37_years	chr5	147382888	147382903	147382888	+	High_confidence	5	6	18	0.668429	2.974938	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.888889
thoracic_aorta_male_adult_37_years	chrX	65735170	65735195	65735170	+	RAMPAGE_only	6	6	11	0.408484	3.095795	chrX	65735035	65735187	SINE|MIR|MIR3	+	chrX	65667669	65741931	MSN|ENST00000360270.6	+	65667669,65716817,65727813,65729437,65731106,65731837,65733183,65735266,65736794,65737177,65738524,65738969,65739728	65667853,65716901,65727909,65729712,65731190,65731984,65733280,65735430,65736925,65737338,65738617,65739194,65741931	1.000000
thoracic_aorta_male_adult_37_years	chr5	150640300	150640321	150640314	+	High_confidence	5	6	23	0.854104	4.142915	chr5	150640219	150640383	LINE|L2|L2c	-	chr5	150640644	150659230	SYNPO|NM_007286.5	+	150640644,150647943,150656403	150640854,150650303,150659230	0.695652
thoracic_aorta_male_adult_37_years	chr13	111186748	111186846	111186748	+	High_confidence	4	4	40	1.485398	4.714647	chr13	111186585	111186768	LINE|L1|X9_LINE	-	chr13	111186825	111305734	ARHGEF7|NM_001113513.1	+	111186825,111205288,111209871,111217678,111233204,111243871,111244198,111267547,111273813,111274730,111275531,111277586,111280271,111280537,111283138,111286146,111288353,111300747,111301477,111302990	111186990,111205373,111210002,111217880,111233293,111243966,111244294,111267670,111273952,111274790,111275678,111277673,111280350,111280677,111283363,111286240,111288443,111300847,111301532,111305734	0.850000
thoracic_aorta_male_adult_37_years	chr9	92406722	92406736	92406727	-	RAMPAGE_only	5	11	21	0.779834	3.594466	chr9	92406482	92406846	LTR|ERVL-MaLR|MLT1F2	-	chr9	92383270	92404699	OGN|NM_033014.3	-	92383270,92386200,92389853,92393085,92401091,92403233,92404495	92385790,92386296,92390056,92393244,92401185,92403764,92404699	0.809524
thoracic_aorta_male_adult_37_years	chr1	161118870	161118875	161118874	+	High_confidence	5	6	13	0.482754	3.084963	chr1	161118894	161118942	LINE|L2|L2c	+	chr1	161118907	161119943	NIT1|ENST00000461376.1	+	161118907,161119508,161119818	161119388,161119612,161119943	0.769231
thoracic_aorta_male_adult_37_years	chrX	74201389	74201533	74201389	-	RAMPAGE_only	17	17	61	2.265231	4.203091	chrX	74201182	74202190	LINE|L1|L1MB7	+	chrX	74184758	74213660	STRG.138377.1	-	74184758,74187558	74187532,74213660	0.967213
thoracic_aorta_male_adult_37_years	chr7	102973502	102973503	102973502	+	High_confidence	4	4	6	0.222810	2.584963	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973521	102988856	NFE4|ENST00000420058.1	+	102973521,102978380,102988032,102988374	102973771,102978520,102988232,102988856	0.833333
thoracic_aorta_male_adult_37_years	chr7	134527596	134527597	134527596	+	High_confidence	27	27	27	1.002643	4.078419	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.962963
thoracic_aorta_male_adult_37_years	chr17	4143196	4143215	4143199	+	High_confidence	42	43	92	3.416414	5.629662	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.978261
thoracic_aorta_male_adult_37_years	chr11	57793768	57793807	57793768	+	RAMPAGE_only	2	3	14	0.519889	3.238901	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57781602	57796584	CTNND1|ENST00000530068.5	+	57781602,57791491,57794009,57795576,57796456	57781646,57791673,57794081,57795729,57796584	0.500000
thoracic_aorta_male_adult_37_years	chr13	106561950	106561951	106561950	-	High_confidence	14	15	15	0.557024	3.807355	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.866667
thoracic_aorta_male_adult_37_years	chr3	188153195	188153229	188153195	+	High_confidence	5	6	27	1.002643	3.923856	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.666667
thoracic_aorta_male_adult_37_years	chr10	95488613	95489065	95488892	-	RAMPAGE_only	54	56	842	31.267619	6.582382	chr10	95488492	95489385	LINE|L2|L2a	+	chr10	95399016	95561355	STRG.82468.14	-	95399016,95406117,95410632,95414493,95421960,95422189,95432447,95437489,95441125,95482433,95561319	95399189,95406147,95410777,95416185,95422073,95422216,95432576,95437555,95441180,95491120,95561355	0.998812
thoracic_aorta_male_adult_37_years	chr1	24813857	24813858	24813857	+	RAMPAGE_only	8	8	12	0.445619	3.022055	chr1	24813720	24814016	SINE|Alu|AluJb	-	chr1	24745381	24839907	CLIC4|ENST00000497755.1	+	24745381,24793176,24797741,24814093,24827009,24839859	24745625,24793213,24797851,24814219,24827116,24839907	0.750000
thoracic_aorta_male_adult_37_years	chr9	114394398	114394413	114394412	-	High_confidence	7	8	16	0.594159	3.280639	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	1.000000
thoracic_aorta_male_adult_37_years	chr19	45823800	45823823	45823800	-	RAMPAGE_only	6	6	14	0.519889	3.180833	chr19	45823777	45823871	LINE|RTE-BovB|MamRTE1	-	chr19	45818954	45855710	SYMPK|ENST00000599814.5	-	45818954,45822755,45823371,45823766,45825170,45826225,45827509,45827836,45828969,45830053,45831383,45835077,45838460,45842249,45844029,45847751,45848749,45852311,45852481,45854174,45854390	45821485,45822846,45823472,45823875,45825331,45826373,45827623,45827918,45829205,45830204,45831588,45835228,45838615,45842489,45844200,45848001,45848876,45852385,45852535,45854240,45855710	0.857143
thoracic_aorta_male_adult_37_years	chr20	58149021	58149069	58149036	-	High_confidence	20	36	100	3.713494	5.730312	chr20	58148882	58149227	LINE|L2|L2a	+	chr20	58090546	58149036	STRG.130319.1	-	58090546,58148807	58091134,58149036	0.620000
thoracic_aorta_male_adult_37_years	chr15	84778198	84778199	84778198	+	High_confidence	10	10	12	0.445619	3.277613	chr15	84778174	84778672	LTR|ERV1|LTR9B	-	chr15	84778259	84802438	ZNF592|ENST00000559607.1	+	84778259,84782656,84790704,84797868,84798314,84798587,84799097,84799841,84801862	84778312,84784895,84790872,84798045,84798474,84798875,84799210,84799977,84802438	0.833333
thoracic_aorta_male_adult_37_years	chr2	229232042	229232054	229232053	-	High_confidence	8	8	17	0.631294	4.000000	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.529412
thoracic_aorta_male_adult_37_years	chr21	28048446	28048447	28048446	+	High_confidence	53	56	63	2.339501	4.196089	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.920635
thoracic_aorta_male_adult_37_years	chr2	86482629	86482665	86482629	+	RAMPAGE_only	2	2	8	0.297080	3.000000	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.500000
thoracic_aorta_male_adult_37_years	chr9	5079759	5079804	5079762	+	RAMPAGE_only	3	3	16	0.594159	2.573557	chr9	5079636	5079828	SINE|Alu|AluJb	+	chr9	5064021	5130651	STRG.71669.3	+	5064021,5069924,5072491,5073697,5077452,5078305,5080532,5081724,5089673,5090445,5090738,5123003,5126332	5069208,5070052,5072626,5073785,5077580,5080380,5080683,5081861,5089863,5090570,5090911,5125165,5130651	0.937500
thoracic_aorta_male_adult_37_years	chr1	12356401	12356415	12356414	+	High_confidence	11	12	20	0.742699	3.041446	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12356350	12510346	VPS13D|ENST00000646411.1	+	12356350,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12356524,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	0.750000
thoracic_aorta_male_adult_37_years	chr12	2798807	2798817	2798816	+	High_confidence	3	3	7	0.259945	2.807355	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	1.000000
thoracic_aorta_male_adult_37_years	chr17	56904346	56904376	56904375	-	RAMPAGE_only	3	3	6	0.222810	2.584963	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56891582	56913472	TRIM25|ENST00000572021.5	-	56891582,56895342,56895520,56895925,56899114,56901418,56904254,56908467,56912104,56913391	56892229,56895441,56895604,56895952,56899180,56901578,56904488,56908563,56912165,56913472	0.500000
thoracic_aorta_male_adult_37_years	chr3	128626787	128626823	128626822	-	RAMPAGE_only	7	7	12	0.445619	3.095795	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.666667
thoracic_aorta_male_adult_37_years	chr11	78532950	78532951	78532950	+	High_confidence	9	9	13	0.482754	3.251629	chr11	78532498	78533068	LTR|ERV1|LTR24C	+	chr11	78533175	78558565	AP003110.1|ENST00000526976.1	+	78533175,78546508,78555214,78558263	78533303,78546640,78555369,78558565	0.538462
thoracic_aorta_male_adult_37_years	chr14	73463605	73463625	73463624	-	High_confidence	11	11	21	0.779834	4.021928	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73366896	73463625	AC005280.3|ENST00000556700.5	-	73366896,73409936,73462528,73463474	73366981,73410068,73462689,73463625	0.571429
thoracic_aorta_male_adult_37_years	chr8	27977120	27977126	27977125	-	RAMPAGE_only	14	18	29	1.076913	4.423252	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.586207
thoracic_aorta_male_adult_37_years	chr16	2759736	2759798	2759797	+	High_confidence	8	9	33	1.225453	4.331977	chr16	2759705	2759830	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.909091
thoracic_aorta_male_adult_37_years	chr3	112603036	112603154	112603135	-	RAMPAGE_only	19	20	83	3.082200	5.162951	chr3	112601964	112603244	DNA|TcMar-Tigger|Tigger1	+	chr3	112596793	112641269	CCDC80|ENST00000206423.7	-	112596793,112607175,112609977,112616709,112618967,112630112,112638027,112640326	112605763,112607256,112610081,112616858,112619104,112630269,112639916,112641269	1.000000
thoracic_aorta_male_adult_37_years	chr1	166850052	166850089	166850052	+	RAMPAGE_only	3	3	10	0.371349	3.321928	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166848006	166856282	STRG.8318.3	+	166848006,166849787	166849733,166856282	1.000000
thoracic_aorta_male_adult_37_years	chr11	3397148	3397192	3397191	+	RAMPAGE_only	8	8	31	1.151183	4.106949	chr11	3397121	3398090	Retroposon|SVA|SVA_E	+	chr11	3381548	3412259	STRG.84300.1	+	3381548,3383461,3384166,3397116,3401758,3402612,3402914,3403592,3404853,3406498,3407621,3408685	3381932,3383546,3395939,3397406,3401867,3402729,3402956,3403652,3404963,3406715,3407697,3412259	0.935484
thoracic_aorta_male_adult_37_years	chr6	124971445	124971495	124971457	+	High_confidence	3	4	23	0.854104	3.142065	chr6	124971448	124971753	SINE|Alu|AluSc	-	chr6	124971254	125045411	RNF217|ENST00000454842.2	+	124971254,125045210	124971598,125045411	0.565217
thoracic_aorta_male_adult_37_years	chr10	103605823	103605824	103605823	-	RAMPAGE_only	7	8	9	0.334214	2.750000	chr10	103605815	103605885	LINE|CR1|L3	+	chr10	103593940	103661762	STRG.82906.5	-	103593940,103597729,103611580,103612852,103617196,103622469,103627088,103660982	103597558,103605917,103611630,103613190,103617314,103622553,103627202,103661762	0.888889
thoracic_aorta_male_adult_37_years	chr1	51403428	51403482	51403428	-	RAMPAGE_only	28	28	93	3.453549	4.462471	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.838710
thoracic_aorta_male_adult_37_years	chr18	7946878	7946888	7946878	+	High_confidence	16	17	26	0.965508	3.589275	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.884615
thoracic_aorta_male_adult_37_years	chr9	98943562	98943576	98943575	+	High_confidence	11	12	23	0.854104	3.970573	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.956522
thoracic_aorta_male_adult_37_years	chr8	53523490	53523519	53523518	-	High_confidence	9	9	19	0.705564	4.058814	chr8	53523216	53523628	LTR|ERV1|HERVE_a-int	-	chr8	53511785	53523931	STRG.67356.2	-	53511785,53521018,53523328	53516954,53521379,53523931	0.947368
thoracic_aorta_male_adult_37_years	chr1	155378299	155378354	155378332	-	RAMPAGE_only	2	2	11	0.408484	3.277613	chr1	155378311	155378369	LINE|CR1|L3	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.909091
thoracic_aorta_male_adult_37_years	chr22	42721166	42721167	42721166	-	High_confidence	9	9	11	0.408484	2.646439	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.909091
thoracic_aorta_male_adult_37_years	chr7	149552989	149553009	149552989	-	RAMPAGE_only	3	3	9	0.334214	2.503258	chr7	149552375	149553298	LINE|L1|HAL1	+	chr7	149549082	149624628	ZNF767P|ENST00000486492.5	-	149549082,149550867,149551654,149552800,149558607,149619923,149621045,149621259,149624541	149549374,149550946,149551826,149553013,149558839,149620037,149621172,149621559,149624628	0.777778
thoracic_aorta_male_adult_37_years	chr4	8410219	8410220	8410219	-	RAMPAGE_only	13	14	19	0.705564	3.787144	chr4	8410043	8410198	DNA|hAT-Charlie|MER20	-	chr4	8374467	8415855	ACOX3|ENST00000510365.5	-	8374467,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765	8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415855	0.894737
thoracic_aorta_male_adult_37_years	chr1	10282518	10282533	10282518	+	High_confidence	2	2	12	0.445619	3.251629	chr1	10282562	10282741	LINE|CR1|L3	+	chr1	10282449	10361824	STRG.621.2	+	10282449,10291081,10292046,10295085,10295659,10296581,10296896,10297173,10320042,10321708,10323883,10324757,10334519,10336656,10337073,10337370,10339768,10342049,10343231,10345844,10347760,10348648,10352630,10360928,10361691	10282533,10291161,10292122,10295165,10295766,10296665,10297077,10297246,10320136,10321857,10324062,10324895,10334638,10336742,10337203,10337533,10339859,10342168,10343287,10345953,10347827,10348733,10352736,10361043,10361824	0.833333
thoracic_aorta_male_adult_37_years	chrY	3002893	3002905	3002893	+	High_confidence	17	17	49	1.819612	5.451445	chrY	3002436	3002992	LTR|ERV1|LTR4	+	chrY	3002901	3008147	STRG.141508.1	+	3002901,3005799	3005361,3008147	0.673469
thoracic_aorta_male_adult_37_years	chr3	48421693	48421697	48421693	-	RAMPAGE_only	7	8	15	0.557024	2.807355	chr3	48421525	48421664	SINE|MIR|MIRb	-	chr3	48414990	48424611	STRG.27105.4	-	48414990,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419674,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504	48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424611	0.866667
thoracic_aorta_male_adult_37_years	chr16	2669379	2669414	2669401	-	RAMPAGE_only	3	3	13	0.482754	2.918296	chr16	2668787	2669524	LTR|ERVK|HERVK13-int	-	chr16	2661148	2673426	STRG.111724.4	-	2661148,2672706,2673282	2672570,2672859,2673426	0.923077
thoracic_aorta_male_adult_37_years	chr16	24733839	24733904	24733839	+	RAMPAGE_only	6	8	23	0.854104	4.229871	chr16	24733831	24733893	LINE|L2|L2	-	chr16	24730130	24804290	STRG.112606.10	+	24730130,24776932,24789231,24794543,24797914	24758360,24777358,24791817,24797570,24804290	1.000000
thoracic_aorta_male_adult_37_years	chr2	127765174	127765175	127765174	-	RAMPAGE_only	9	9	10	0.371349	2.947703	chr2	127765110	127765160	LINE|CR1|L3	-	chr2	127701021	127811147	WDR33|ENST00000322313.8	-	127701021,127708676,127709489,127709692,127713582,127717154,127719264,127721835,127722590,127722957,127723252,127724332,127724886,127725060,127726650,127763061,127764827,127765173,127768188,127768932,127770777,127811011	127706552,127708892,127709582,127709856,127714021,127717263,127720353,127721988,127722730,127723044,127723347,127724443,127724965,127725215,127726777,127763159,127764979,127765269,127768293,127769001,127771004,127811147	0.800000
thoracic_aorta_male_adult_37_years	chr2	218287279	218287283	218287279	-	High_confidence	6	6	12	0.445619	3.095795	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.833333
thoracic_aorta_male_adult_37_years	chr1	100268268	100268284	100268283	+	RAMPAGE_only	3	3	7	0.259945	2.521641	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266288	100292769	STRG.5790.4	+	100266288,100266523,100268151,100270556,100273393,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100268295,100270680,100274965,100275723,100277316,100285322,100287203,100292769	1.000000
thoracic_aorta_male_adult_37_years	chr1	25553714	25553715	25553714	+	High_confidence	10	10	12	0.445619	2.855389	chr1	25553569	25553789	SINE|Alu|AluSz	+	chr1	25553363	25568884	LDLRAP1|ENST00000488127.1	+	25553363,25554859,25557152,25562643,25563069,25563660,25566847	25554064,25554972,25557267,25562716,25563153,25565207,25568884	1.000000
thoracic_aorta_male_adult_37_years	chr5	149415914	149415915	149415914	+	RAMPAGE_only	42	42	46	1.708207	4.716618	chr5	149415850	149416140	SINE|Alu|AluSx3	+	chr5	149407244	149424381	STRG.48061.10	+	149407244,149421480,149423433	149420544,149423309,149424381	1.000000
thoracic_aorta_male_adult_37_years	chr18	50843101	50843112	50843101	-	High_confidence	5	5	15	0.557024	3.324863	chr18	50842925	50843332	LTR|ERVL|MLT2D	-	chr18	50801463	50843088	STRG.121788.1	-	50801463,50805153,50806703,50809301,50843019	50801504,50805336,50806850,50809404,50843088	0.733333
thoracic_aorta_male_adult_37_years	chr3	57267745	57267782	57267781	+	RAMPAGE_only	13	18	32	1.188318	3.962103	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.843750
thoracic_aorta_male_adult_37_years	chr3	112599257	112599286	112599257	-	RAMPAGE_only	5	8	25	0.928373	4.251629	chr3	112599063	112599235	SINE|MIR|MIR3	-	chr3	112596793	112601969	LINC01279|NR_109779.1	-	112596793	112601969	0.960000
thoracic_aorta_male_adult_37_years	chr8	117901583	117901584	117901583	-	RAMPAGE_only	8	9	12	0.445619	3.095795	chr8	117901114	117901685	DNA|TcMar-Tigger|Tigger3b	-	chr8	117879550	117997227	STRG.69914.9	-	117879550,117887982	117887481,117997227	0.916667
thoracic_aorta_male_adult_37_years	chr11	12225761	12225762	12225761	+	High_confidence	7	7	7	0.259945	2.521641	chr11	12225490	12225784	SINE|Alu|AluSx1	-	chr11	12226206	12244034	MICAL2|ENST00000526475.1	+	12226206,12227024,12236176,12239435,12243986	12226370,12227131,12236245,12239585,12244034	0.857143
thoracic_aorta_male_adult_37_years	chr17	31993952	31993994	31993993	+	High_confidence	5	5	13	0.482754	2.931209	chr17	31994036	31994094	LINE|L1|L1MA2	+	chr17	31994352	31999376	SUZ12|ENST00000578106.1	+	31994352,31995563,31996797,31998657	31994721,31995762,31996877,31999376	0.923077
thoracic_aorta_male_adult_37_years	chr11	114300951	114301009	114301008	+	RAMPAGE_only	7	8	41	1.522533	5.162430	chr11	114301047	114301794	LINE|L1|L1MC1	+	chr11	114059592	114312515	STRG.89637.1	+	114059592,114063210,114156336,114186951,114242166,114247197,114250325,114293681	114061561,114064568,114156434,114187038,114242337,114247365,114293447,114312515	1.000000
thoracic_aorta_male_adult_37_years	chr1	15751900	15751949	15751900	+	RAMPAGE_only	42	46	176	6.535749	5.873964	chr1	15751870	15752034	LINE|L2|L2b	-	chr1	15756606	15765073	FBLIM1|ENST00000496928.6	+	15756606,15758173,15764492,15764963	15756732,15758355,15764685,15765073	0.835227
thoracic_aorta_male_adult_37_years	chr16	20674497	20674498	20674497	+	High_confidence	8	10	12	0.445619	3.095795	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.833333
thoracic_aorta_male_adult_37_years	chr1	171207461	171207488	171207487	+	High_confidence	4	5	14	0.519889	3.392747	chr1	171207202	171207514	LINE|L2|L2	+	chr1	171207542	171209207	FMO2|ENST00000488431.1	+	171207542,171208793	171207790,171209207	0.500000
thoracic_aorta_male_adult_37_years	chr14	91462124	91462210	91462209	-	High_confidence	14	14	76	2.822255	4.967380	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.921053
thoracic_aorta_male_adult_37_years	chr19	10379686	10379687	10379686	-	High_confidence	7	7	7	0.259945	2.807355	chr19	10379599	10379809	SINE|MIR|MIRb	+	chr19	10368328	10380510	TYK2|ENST00000530829.1	-	10368328,10369756,10378213,10379614,10380379	10368418,10369877,10378426,10379779,10380510	1.000000
thoracic_aorta_male_adult_37_years	chr1	161196556	161196559	161196558	-	RAMPAGE_only	4	7	10	0.371349	2.846439	chr1	161196461	161196536	DNA|hAT-Tip100|MER91C	-	chr1	161184307	161199053	STRG.8111.3	-	161184307,161193212,161193934,161197994	161192240,161193826,161196880,161199053	1.000000
thoracic_aorta_male_adult_37_years	chr6	169654661	169654723	169654722	-	RAMPAGE_only	4	4	20	0.742699	4.121928	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169558320	169667275	WDR27|ENST00000546525.5	-	169558320,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197,169651929,169658275,169659085,169659450,169660662,169662303,169663562,169664165,169665485,169667135	169559927,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649275,169652008,169658358,169659207,169659518,169660766,169662424,169663649,169664286,169665556,169667275	0.500000
thoracic_aorta_male_adult_37_years	chr1	16981055	16981094	16981087	-	High_confidence	9	15	62	2.302366	3.987176	chr1	16980989	16981106	LINE|L2|L2b	+	chr1	16974501	16980835	MFAP2|ENST00000375535.3	-	16974501,16975268,16975642,16976500,16976707,16976896,16977108,16978236,16980586	16975023,16975342,16975730,16976545,16976794,16976923,16977198,16978314,16980835	0.951613
thoracic_aorta_male_adult_37_years	chr7	142862035	142862050	142862035	+	High_confidence	2	2	11	0.408484	3.121928	chr7	142861936	142862309	LTR|ERVL-MaLR|MLT1A0	-	chr7	142862034	142871087	EPHB6|ENST00000611578.4	+	142862034,142862755,142863126,142863630,142863965,142864533,142865474,142865959,142866480,142866940,142867607,142867996,142868240,142868491,142868973,142869816,142870213,142870529,142870795	142862133,142862833,142863327,142863695,142864262,142864749,142865630,142866316,142866605,142867068,142867722,142868049,142868360,142868739,142869147,142869966,142870407,142870685,142871087	0.909091
thoracic_aorta_male_adult_37_years	chr2	29175280	29175281	29175280	+	High_confidence	4	5	7	0.259945	2.584963	chr2	29175307	29175605	LINE|CR1|L3	+	chr2	29175362	29181758	CLIP4|ENST00000481628.1	+	29175362,29181571	29175600,29181758	0.857143
thoracic_aorta_male_adult_37_years	chr1	176162936	176162963	176162936	-	RAMPAGE_only	15	15	32	1.188318	4.452820	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	176116645	176206440	COP1|ENST00000491600.5	-	176116645,176135009,176136487,176149005,176162868,176163814,176168664,176175909,176184632,176206348	176116681,176135086,176136547,176149074,176162988,176163891,176168748,176176007,176184692,176206440	0.812500
thoracic_aorta_male_adult_37_years	chr12	108330113	108330142	108330113	-	RAMPAGE_only	2	2	8	0.297080	2.521641	chr12	108329939	108330453	LTR|ERVL-MaLR|MLT1H	+	chr12	108288043	108339317	CMKLR1|ENST00000312143.11	-	108288043,108293588,108339026	108292959,108293664,108339317	0.750000
thoracic_aorta_male_adult_37_years	chr5	177487299	177487300	177487299	-	RAMPAGE_only	6	6	9	0.334214	2.750000	chr5	177487228	177487606	LTR|ERVL-MaLR|MLT1J	+	chr5	177483397	177492572	STRG.48997.18	-	177483397,177483866,177484069,177489392,177489770,177490869,177491009,177491403,177492404,177492525	177483730,177483982,177488248,177489627,177489832,177490906,177491146,177491420,177492435,177492572	0.888889
thoracic_aorta_male_adult_37_years	chr19	3667327	3667349	3667348	-	RAMPAGE_only	10	10	19	0.705564	3.826875	chr19	3667202	3667314	SINE|MIR|MIR3	-	chr19	3636600	3700390	PIP5K1C|ENST00000537021.1	-	3636600,3638883,3641704,3642906,3643242,3644086,3645973,3647337,3648624,3651825,3653289,3656404,3660965,3661870,3664821,3667321,3700296	3638006,3639016,3641809,3642939,3643381,3644251,3646058,3647386,3648708,3652031,3653589,3656557,3661083,3662001,3664914,3667353,3700390	0.736842
thoracic_aorta_male_adult_37_years	chr22	24011687	24011716	24011715	+	High_confidence	3	3	8	0.297080	2.750000	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
thoracic_aorta_male_adult_37_years	chr11	57793727	57793744	57793743	+	RAMPAGE_only	3	3	7	0.259945	2.807355	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57781602	57796584	CTNND1|ENST00000530068.5	+	57781602,57791491,57794009,57795576,57796456	57781646,57791673,57794081,57795729,57796584	0.571429
thoracic_aorta_male_adult_37_years	chr20	37297333	37297345	37297333	+	High_confidence	3	3	9	0.334214	2.947703	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
thoracic_aorta_male_adult_37_years	chr3	33838239	33838257	33838256	+	RAMPAGE_only	15	17	28	1.039778	4.458591	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.535714
thoracic_aorta_male_adult_37_years	chr3	50230995	50230996	50230995	+	High_confidence	7	7	7	0.259945	2.521641	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	1.000000
thoracic_aorta_male_adult_37_years	chr1	20028407	20028426	20028407	+	High_confidence	17	18	47	1.745342	5.214163	chr1	20028126	20028464	LTR|ERV1|LTR46	-	chr1	20028429	20091158	PLA2G5|ENST00000465698.5	+	20028429,20059631,20068872,20084820,20086082,20088824,20089788,20090567	20028709,20059692,20069032,20084870,20086227,20088943,20089895,20091158	0.702128
thoracic_aorta_male_adult_37_years	chr9	127451082	127451088	127451082	-	High_confidence	3	3	9	0.334214	2.503258	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	1.000000
thoracic_aorta_male_adult_37_years	chr9	94793082	94793116	94793115	+	High_confidence	12	15	63	2.339501	4.340676	chr9	94793083	94793350	SINE|Alu|AluSc	+	chr9	94793078	94990547	STRG.74816.9	+	94793078,94800756,94923985,94928424,94955176,94955907,94967757,94979366	94793762,94801002,94924175,94928531,94955279,94956015,94967801,94990547	0.968254
thoracic_aorta_male_adult_37_years	chr2	182928788	182928798	182928788	-	RAMPAGE_only	15	16	28	1.039778	4.286790	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.678571
thoracic_aorta_male_adult_37_years	chrX	65532875	65532876	65532875	-	RAMPAGE_only	7	7	8	0.297080	2.807355	chrX	65532780	65532966	LINE|L2|L2c	-	chrX	65512582	65534754	STRG.137764.5	-	65512582,65514822,65517986,65523559,65524055,65524964,65528259,65529211,65529593,65531356,65532560,65534479	65512901,65514973,65518465,65523707,65524262,65525050,65528369,65529258,65529878,65531438,65533735,65534754	0.875000
thoracic_aorta_male_adult_37_years	chr6	52579438	52579439	52579438	+	RAMPAGE_only	8	8	8	0.297080	2.750000	chr6	52579191	52579722	LTR|ERVL-MaLR|MLT1F1	+	chr6	52578365	52583559	TRAM2-AS1|ENST00000605910.1	+	52578365,52578501,52579374,52582862	52578393,52578594,52579609,52583559	0.500000
thoracic_aorta_male_adult_37_years	chr1	211366371	211366453	211366383	+	RAMPAGE_only	12	13	55	2.042422	5.158366	chr1	211366365	211366790	LINE|L2|L2c	-	chr1	211326836	211374785	STRG.10241.4	+	211326836,211353238,211354409,211356366,211359911,211360701,211361087,211365375,211371301,211372127	211326889,211353457,211354467,211356468,211360076,211360779,211361162,211369592,211371470,211374785	1.000000
thoracic_aorta_male_adult_37_years	chr1	36471454	36471479	36471454	-	High_confidence	2	2	8	0.297080	2.807355	chr1	36471346	36471414	SINE|MIR|MIR	-	chr1	36466082	36471474	CSF3R|ENST00000464465.6	-	36466082,36467229,36467557,36467821,36468074,36469651,36471432	36466827,36467311,36467651,36467962,36468221,36469840,36471474	0.625000
thoracic_aorta_male_adult_37_years	chr9	128187884	128187926	128187884	-	RAMPAGE_only	2	2	11	0.408484	3.121928	chr9	128187633	128188001	LINE|L1|L1M5	+	chr9	128166151	128190710	CIZ1|ENST00000415526.5	-	128166151,128166758,128167094,128169051,128169405,128170019,128176350,128177565,128178368,128178708,128180414,128180720,128185546,128190328,128190687	128166406,128166880,128167164,128169201,128169519,128170107,128176475,128177763,128178490,128179415,128180523,128180799,128185776,128190444,128190710	0.818182
thoracic_aorta_male_adult_37_years	chr4	54267140	54267153	54267152	+	RAMPAGE_only	3	3	6	0.222810	2.584963	chr4	54267043	54267244	LINE|L1|L1MC1	-	chr4	54230321	54298245	STRG.35932.3	+	54230321,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54280315,54285370,54285840,54287429,54288798,54289008,54290312,54295124	54233443,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54280482,54285486,54285963,54287541,54288898,54289114,54290554,54298245	0.500000
thoracic_aorta_male_adult_37_years	chr14	32402135	32402136	32402135	+	High_confidence	374	378	379	14.074142	3.676805	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32402040	32773829	STRG.101893.3	+	32402040,32433459,32535553,32545229,32577119,32599409,32600628,32678310,32695989,32732453,32735657,32773677	32402141,32433817,32535805,32546999,32577242,32599506,32600792,32678459,32696110,32732600,32735882,32773829	0.984169
thoracic_aorta_male_adult_37_years	chr19	10564937	10564938	10564937	-	RAMPAGE_only	6	6	9	0.334214	2.947703	chr19	10564755	10564893	SINE|MIR|MIRb	-	chr19	10553575	10565971	KRI1|ENST00000478863.5	-	10553575,10555086,10555284,10557551,10557971,10558163,10559358,10559612,10559809,10560311,10561002,10561168,10561666,10561790,10562728,10564928,10565716,10565905	10554281,10555185,10555349,10557895,10558060,10558239,10559529,10559708,10559936,10560448,10561080,10561265,10561716,10561845,10562837,10565034,10565790,10565971	1.000000
thoracic_aorta_male_adult_37_years	chr10	95441344	95441350	95441345	-	High_confidence	7	10	18	0.668429	3.616875	chr10	95441276	95441438	SINE|MIR|MIR3	+	chr10	95311772	95441180	SORBS1|NM_001034954.1	-	95311772,95318319,95321962,95336520,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95394610,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95422189,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95337294,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95394673,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95422216,95432576,95434717,95437555,95441180	0.666667
thoracic_aorta_male_adult_37_years	chr16	67183453	67183492	67183456	-	High_confidence	6	6	22	0.816969	3.913977	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.909091
thoracic_aorta_male_adult_37_years	chr16	70250782	70250818	70250796	-	RAMPAGE_only	10	10	28	1.039778	4.066109	chr16	70250712	70250826	SINE|Alu|AluJr	+	chr16	70246777	70251930	EXOSC6|ENST00000435634.2	-	70246777	70251930	0.964286
thoracic_aorta_male_adult_37_years	chr12	132782313	132782424	132782351	-	RAMPAGE_only	7	7	51	1.893882	5.109508	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132768914	132778568	STRG.98106.25	-	132768914,132774156,132775140,132776633,132776957	132773294,132774320,132775305,132776756,132778568	0.647059
thoracic_aorta_male_adult_37_years	chr15	80059915	80059933	80059918	+	High_confidence	31	38	107	3.973439	4.772465	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.981308
thoracic_aorta_male_adult_37_years	chr11	65434070	65434928	65434588	+	RAMPAGE_only	96	111	2625	97.479217	7.939294	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
thoracic_aorta_male_adult_37_years	chr11	68773389	68773415	68773414	-	RAMPAGE_only	7	7	12	0.445619	3.418296	chr11	68773373	68773449	LINE|CR1|L3	+	chr11	68757612	68815503	CPT1A|ENST00000539743.5	-	68757612,68759568,68760224,68761534,68762626,68773264,68775315,68780639,68781770,68784814,68793314,68794803,68796855,68799217,68803999,68807466,68812436,68815333	68757730,68759661,68760338,68761687,68762761,68773429,68775432,68780745,68781959,68785010,68793402,68794911,68796933,68799355,68804101,68807638,68812576,68815503	0.916667
thoracic_aorta_male_adult_37_years	chr3	123884214	123884251	123884214	-	High_confidence	6	7	23	0.854104	3.880180	chr3	123883879	123884307	LINE|L1|L1M4b	+	chr3	123612295	123884302	MYLK|NM_053025.3	-	123612295,123618638,123620206,123626817,123629473,123638070,123640286,123647223,123648970,123649161,123657125,123664104,123666218,123667136,123682223,123692734,123700019,123701437,123707753,123708697,123709755,123722127,123725943,123732895,123733686,123735397,123737377,123738896,123739952,123752330,123793676,123831547,123876558,123884205	123614349,123618770,123620336,123626941,123629626,123638194,123640504,123647427,123649064,123649194,123657428,123664258,123666346,123667187,123682310,123692851,123701005,123701509,123708003,123708895,123709893,123722280,123726078,123733102,123734222,123735416,123737543,123739062,123740001,123752538,123793844,123831670,123876617,123884302	0.695652
thoracic_aorta_male_adult_37_years	chr5	150125667	150125683	150125682	-	High_confidence	2	2	7	0.259945	2.584963	chr5	150125664	150125738	SINE|MIR|MIR3	-	chr5	150124169	150125520	PDGFRB|ENST00000520229.1	-	150124169,150125444	150124831,150125520	0.714286
thoracic_aorta_male_adult_37_years	chr3	195688558	195688580	195688562	+	High_confidence	2	3	10	0.371349	3.121928	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688581	195708801	STRG.33417.12	+	195688581,195689338,195696360,195699029,195708746	195688797,195689438,195696589,195708268,195708801	1.000000
thoracic_aorta_male_adult_37_years	chr14	21360437	21360477	21360437	-	RAMPAGE_only	4	4	27	1.002643	3.884155	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351478	21358402	SUPT16H|ENST00000557394.5	-	21351478,21353487,21353702,21354410,21357196,21357926	21352818,21353565,21353832,21354540,21357366,21358402	0.629630
thoracic_aorta_male_adult_37_years	chr5	151687193	151687251	151687244	-	High_confidence	13	13	59	2.190961	5.266295	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.983051
thoracic_aorta_male_adult_37_years	chr15	48162728	48162742	48162728	-	RAMPAGE_only	1	2	7	0.259945	2.584963	chr15	48162546	48165001	DNA|TcMar-Tigger|Tigger1	+	chr15	48152116	48178291	STRG.107448.6	-	48152116,48153791,48157992,48158174,48158768,48159612,48166120,48168630,48178076	48152284,48153893,48158056,48158224,48158922,48166026,48166128,48168839,48178291	0.857143
thoracic_aorta_male_adult_37_years	chr2	109186344	109186384	109186383	+	RAMPAGE_only	5	5	15	0.557024	3.056565	chr2	109186225	109186457	SINE|MIR|MIR	-	chr2	109129347	109199313	STRG.17856.2	+	109129347,109187155	109186996,109199313	1.000000
thoracic_aorta_male_adult_37_years	chr1	112956610	112956659	112956658	+	High_confidence	3	3	22	0.816969	3.913977	chr1	112956705	112956908	SINE|MIR|MIR	+	chr1	112956519	112968398	SLC16A1-AS1|ENST00000420168.1	+	112956519,112960476,112968034	112956956,112960575,112968398	0.909091
thoracic_aorta_male_adult_37_years	chr11	114281522	114281570	114281550	+	RAMPAGE_only	10	13	44	1.633937	4.945772	chr11	114281287	114281599	LINE|L2|L2c	-	chr11	114059592	114312515	STRG.89637.1	+	114059592,114063210,114156336,114186951,114242166,114247197,114250325,114293681	114061561,114064568,114156434,114187038,114242337,114247365,114293447,114312515	0.954545
thoracic_aorta_male_adult_37_years	chr4	70763562	70763604	70763603	+	RAMPAGE_only	4	4	18	0.668429	3.292770	chr4	70763601	70763658	LINE|L2|L2a	-	chr4	70734433	70807102	RUFY3|ENST00000502653.5	+	70734433,70741626,70762518,70763551,70764474,70768537,70773510,70775167,70778368,70783090,70784795,70788805,70789494,70793784,70794794,70800140,70802955,70804347,70806515	70734593,70741680,70762692,70763669,70764576,70768661,70773572,70775233,70778438,70783183,70784879,70788973,70789592,70793904,70794894,70800205,70802983,70804416,70807102	0.888889
thoracic_aorta_male_adult_37_years	chr8	116648828	116648917	116648864	-	RAMPAGE_only	10	11	47	1.745342	5.027889	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.978723
thoracic_aorta_male_adult_37_years	chr17	19386333	19386433	19386345	-	High_confidence	16	17	172	6.387210	6.182935	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.994186
thoracic_aorta_male_adult_37_years	chr7	128648788	128648789	128648788	+	RAMPAGE_only	9	10	14	0.519889	3.546594	chr7	128648764	128648951	SINE|Alu|AluJb	-	chr7	128641240	128660998	LINC01000|NR_024368.1	+	128641240,128642216,128648791,128651037,128651188	128641379,128642281,128648982,128651095,128660998	0.785714
thoracic_aorta_male_adult_37_years	chr14	102235458	102235481	102235458	-	High_confidence	8	9	24	0.891239	3.708132	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.875000
thoracic_aorta_male_adult_37_years	chr3	123835872	123835907	123835879	-	RAMPAGE_only	2	3	12	0.445619	3.277613	chr3	123835604	123836237	LTR|ERV1|MER39B	+	chr3	123612297	123876618	MYLK|ENST00000354792.9	-	123612297,123618638,123620206,123626817,123629473,123638070,123640286,123647223,123648970,123649161,123657125,123664104,123666218,123667136,123682223,123692734,123700019,123701437,123707753,123708697,123709755,123722127,123725943,123733686,123735397,123737377,123738896,123739952,123752330,123793676,123831547,123876558	123614349,123618770,123620336,123626941,123629626,123638194,123640504,123647427,123649064,123649194,123657428,123664258,123666346,123667187,123682310,123692851,123701005,123701509,123708003,123708895,123709893,123722280,123726078,123734222,123735416,123737543,123739062,123740001,123752538,123793844,123831670,123876618	0.500000
thoracic_aorta_male_adult_37_years	chr12	120810825	120810826	120810825	-	RAMPAGE_only	6	6	6	0.222810	2.584963	chr12	120810699	120810790	SINE|tRNA|LFSINE_Vert	-	chr12	120782689	120835657	SPPL3|ENST00000543181.5	-	120782689,120783673,120784473,120791468,120810808,120835438	120782767,120783752,120784593,120791557,120810886,120835657	0.833333
thoracic_aorta_male_adult_37_years	chr1	15758179	15758218	15758217	+	High_confidence	6	6	22	0.816969	4.152391	chr1	15758111	15758311	SINE|MIR|MIRb	-	chr1	15758418	15786594	FBLIM1|ENST00000375766.7	+	15758418,15764495,15764963,15767375,15768527,15770408,15774617,15777169,15784547	15758848,15764685,15765233,15767563,15768630,15770578,15774796,15777287,15786594	0.772727
thoracic_aorta_male_adult_37_years	chr6	122444147	122444780	122444187	-	RAMPAGE_only	56	70	964	35.798082	6.401117	chr6	122444020	122444285	SINE|Alu|AluJb	-	chr6	122443353	122471822	SERINC1|ENST00000339697.4	-	122443353,122446773,122447120,122451663,122451887,122453769,122454150,122456480,122458519,122471698	122445179,122447004,122447265,122451754,122452057,122453907,122454230,122456650,122458681,122471822	1.000000
thoracic_aorta_male_adult_37_years	chr2	231072254	231072255	231072254	+	RAMPAGE_only	5	5	8	0.297080	2.521641	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.750000
thoracic_aorta_male_adult_37_years	chr5	109383492	109383500	109383497	-	High_confidence	6	7	16	0.594159	3.506891	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.875000
thoracic_aorta_male_adult_37_years	chr2	110433512	110433531	110433529	-	RAMPAGE_only	2	4	9	0.334214	3.000000	chr2	110431817	110433632	LINE|L1|L1PB2	-	chr2	110403154	110435166	STRG.17878.16	-	110403154	110435166	0.888889
thoracic_aorta_male_adult_37_years	chr19	43734595	43734626	43734595	-	High_confidence	4	4	12	0.445619	3.095795	chr19	43734554	43734683	DNA|hAT-Charlie|Charlie4z	-	chr19	43733423	43734825	SMG9|ENST00000598860.1	-	43733423,43733625,43734388	43733452,43733733,43734825	0.666667
thoracic_aorta_male_adult_37_years	chr4	152412488	152412529	152412528	-	High_confidence	23	23	43	1.596802	4.737668	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
thoracic_aorta_male_adult_37_years	chr17	15475727	15475728	15475727	-	RAMPAGE_only	9	9	11	0.408484	3.459432	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15436014	15467611	CDRT4|ENST00000619038.4	-	15436014,15440207,15453003,15467459	15438200,15440285,15453085,15467611	0.545455
thoracic_aorta_male_adult_37_years	chr19	45524101	45524140	45524130	+	RAMPAGE_only	11	11	37	1.373993	4.030814	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.837838
thoracic_aorta_male_adult_37_years	chr4	73144765	73144781	73144770	-	RAMPAGE_only	4	6	18	0.668429	3.381580	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.888889
thoracic_aorta_male_adult_37_years	chr12	47753900	47753954	47753934	+	High_confidence	9	11	68	2.525176	4.652921	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47753929	47756485	SLC48A1|ENST00000552003.1	+	47753929,47755701	47754027,47756485	0.779412
thoracic_aorta_male_adult_37_years	chr20	3795750	3795789	3795750	+	High_confidence	34	34	157	5.830186	6.263803	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.980892
thoracic_aorta_male_adult_37_years	chr20	62366960	62367014	62366998	-	High_confidence	5	5	23	0.854104	4.186704	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.913043
thoracic_aorta_male_adult_37_years	chr10	22565238	22565262	22565261	-	RAMPAGE_only	3	5	13	0.482754	3.188722	chr10	22565088	22565287	LINE|L2|L2b	+	chr10	22554006	22714499	STRG.78899.4	-	22554006,22591628,22607926,22609619,22714182	22573457,22591781,22608023,22609717,22714499	0.923077
thoracic_aorta_male_adult_37_years	chr1	166850305	166850330	166850329	+	RAMPAGE_only	3	4	8	0.297080	2.807355	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166848006	166856282	STRG.8318.3	+	166848006,166849787	166849733,166856282	0.875000
thoracic_aorta_male_adult_37_years	chr15	90440420	90440421	90440420	+	RAMPAGE_only	5	6	7	0.259945	2.521641	chr15	90440315	90440432	SINE|MIR|MIRb	-	chr15	90388246	90500854	IQGAP1|ENST00000633485.1	+	90388246,90390773,90426109,90429588,90433718,90439331,90440501,90441505,90443393,90448572,90449558,90452774,90453131,90454427,90456151,90466000,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90482701,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390873,90426266,90429666,90433795,90439399,90440615,90441684,90443478,90448736,90449643,90452938,90453292,90454552,90456315,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90482749,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500854	1.000000
thoracic_aorta_male_adult_37_years	chr21	32641896	32641912	32641911	-	High_confidence	3	3	11	0.408484	3.121928	chr21	32641733	32641912	SINE|MIR|MIR3	-	chr21	32631777	32641945	SYNJ1|ENST00000418301.3	-	32631777,32634860,32638907,32639670,32641895	32631801,32634881,32639125,32639779,32641945	0.636364
thoracic_aorta_male_adult_37_years	chr10	10846058	10846069	10846068	+	RAMPAGE_only	3	3	8	0.297080	2.807355	chr10	10845996	10846078	SINE|MIR|MIR1_Amn	+	chr10	10798623	11329053	STRG.78092.4	+	10798623,10846062,10919963,11165485,11217424,11249152,11257737,11266597,11270665,11275056,11288417,11314138,11321206,11325835,11328925	10798817,10846156,10919999,11165682,11217507,11249201,11257872,11266677,11270824,11275120,11288552,11314270,11321386,11325979,11329053	0.750000
thoracic_aorta_male_adult_37_years	chr20	46363941	46363984	46363963	-	High_confidence	10	12	42	1.559667	4.500981	chr20	46363820	46363964	LINE|L2|L2a	+	chr20	46360717	46363956	STRG.129814.9	-	46360717	46363956	0.833333
thoracic_aorta_male_adult_37_years	chr16	86682471	86682472	86682471	+	RAMPAGE_only	6	6	9	0.334214	2.947703	chr16	86682238	86682640	LTR|ERVL-MaLR|MLT1C	+	chr16	86680735	86683127	STRG.114927.1	+	86680735	86683127	0.777778
thoracic_aorta_male_adult_37_years	chr7	100355169	100355175	100355169	+	RAMPAGE_only	5	5	12	0.445619	3.095795	chr7	100355125	100355232	LINE|L1|L1MD	-	chr7	100353735	100359014	PILRB|ENST00000431140.5	+	100353735,100355142,100356749,100358219,100358898	100354012,100355240,100356883,100358366,100359014	0.750000
thoracic_aorta_male_adult_37_years	chr1	93582539	93582552	93582539	-	RAMPAGE_only	3	3	7	0.259945	2.521641	chr1	93582523	93582592	LINE|L2|L2	+	chr1	93561786	93585082	BCAR3|ENST00000539242.5	-	93561786,93567278,93567739,93571669,93576013,93582300,93584017,93584971	93562419,93567491,93567851,93571841,93576129,93582953,93584121,93585082	0.857143
thoracic_aorta_male_adult_37_years	chr20	36547541	36547561	36547541	+	RAMPAGE_only	2	2	10	0.371349	2.947703	chr20	36547562	36547740	SINE|MIR|MIRb	+	chr20	36541496	36549825	STRG.129243.3	+	36541496,36544858,36549076	36541561,36548193,36549825	0.900000
thoracic_aorta_male_adult_37_years	chr1	179118710	179118735	179118734	-	RAMPAGE_only	3	3	8	0.297080	2.807355	chr1	179118593	179118709	LINE|RTE-BovB|MamRTE1	-	chr1	179107717	179143044	ABL2|ENST00000504405.5	-	179107717,179109207,179110281,179112308,179114877,179117331,179118586,179120189,179121594,179126376,179131310,179142932	179108898,179109441,179110455,179112398,179115030,179117516,179118764,179120274,179121867,179126672,179131481,179143044	0.750000
thoracic_aorta_male_adult_37_years	chr6	139277228	139277229	139277228	-	High_confidence	4	4	7	0.259945	2.584963	chr6	139277177	139277408	DNA|hAT-Charlie|Charlie19a	-	chr6	139239085	139277181	AL158850.1|ENST00000616537.4	-	139239085,139244594,139247816,139255563,139260317,139262578,139270455,139276829,139277081	139239331,139244690,139247909,139255638,139260437,139262773,139270626,139276921,139277181	0.857143
thoracic_aorta_male_adult_37_years	chr3	124438706	124438724	124438723	+	RAMPAGE_only	5	6	12	0.445619	3.277613	chr3	124438625	124438783	LINE|L2|L2	+	chr3	124384824	124488865	KALRN|ENST00000393501.5	+	124384824,124395134,124398696,124413469,124422811,124430655,124434306,124438887,124441944,124446160,124446762,124455176,124456609,124461889,124462523,124474662,124477244,124482807,124488203	124385036,124395304,124398871,124413665,124422978,124430775,124434525,124439037,124442059,124446276,124446885,124455359,124456728,124461956,124462633,124474732,124477334,124482900,124488865	0.500000
thoracic_aorta_male_adult_37_years	chr6	79631294	79631329	79631328	+	High_confidence	80	96	271	10.063569	6.127146	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.992620
thoracic_aorta_male_adult_37_years	chr1	166850177	166850187	166850177	+	RAMPAGE_only	4	5	12	0.445619	3.084963	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166848006	166856282	STRG.8318.3	+	166848006,166849787	166849733,166856282	1.000000
thoracic_aorta_male_adult_37_years	chr11	32953955	32953979	32953978	+	RAMPAGE_only	3	3	7	0.259945	2.584963	chr11	32953932	32953995	LINE|CR1|L3	-	chr11	32934583	32975630	QSER1|ENST00000524678.1	+	32934583,32953856,32955295,32955987,32957868,32966299,32969045,32973396,32975247	32935435,32954179,32955412,32956121,32958086,32966437,32969143,32973549,32975630	0.857143
thoracic_aorta_male_adult_37_years	chr22	23700730	23700737	23700730	-	RAMPAGE_only	3	3	7	0.259945	2.584963	chr22	23700074	23701270	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.857143
thoracic_aorta_male_adult_37_years	chr10	45000503	45000515	45000514	+	High_confidence	4	5	8	0.297080	3.000000	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
thoracic_aorta_male_adult_37_years	chr15	38004722	38004736	38004724	+	High_confidence	3	5	11	0.408484	3.121928	chr15	38003252	38004953	LINE|L1|L1M1	-	chr15	38004745	38025018	LINC02345|ENST00000557883.2	+	38004745,38020191,38024680	38004832,38020532,38025018	0.818182
thoracic_aorta_male_adult_37_years	chr10	29529911	29529979	29529911	-	RAMPAGE_only	2	3	17	0.631294	3.616875	chr10	29529889	29530201	SINE|Alu|AluJr	+	chr10	29457347	29634972	SVIL|NM_021738.2	-	29457347,29458433,29462276,29463491,29465594,29467741,29470275,29471137,29473837,29480536,29481583,29484655,29486084,29486409,29487162,29488600,29490846,29493213,29494913,29495091,29499115,29512734,29522409,29523450,29524471,29526960,29529704,29530606,29531253,29532001,29532528,29535988,29550596,29554782,29555050,29563200,29569254,29634419	29458333,29458589,29462401,29463635,29465750,29467875,29470483,29471243,29473989,29480813,29481728,29484831,29486230,29486557,29487299,29488756,29491019,29493391,29495000,29495181,29499263,29512861,29522635,29524027,29524715,29527056,29529844,29530668,29531288,29532172,29533458,29536069,29551263,29554934,29555108,29563292,29569312,29634972	0.941176
thoracic_aorta_male_adult_37_years	chr4	39508575	39508605	39508575	-	RAMPAGE_only	4	4	12	0.445619	3.277613	chr4	39508247	39508532	SINE|Alu|AluJr	-	chr4	39498787	39526557	UGDH|ENST00000506179.5	-	39498787,39503874,39504416,39505236,39505617,39508565,39509759,39510352,39510660,39514082,39521350,39526383	39500253,39503985,39504508,39505370,39505748,39508660,39509907,39510550,39510861,39514184,39521519,39526557	0.833333
thoracic_aorta_male_adult_37_years	chr10	29529999	29530010	29530007	-	RAMPAGE_only	4	6	12	0.445619	3.095795	chr10	29529889	29530201	SINE|Alu|AluJr	+	chr10	29457347	29634972	SVIL|NM_021738.2	-	29457347,29458433,29462276,29463491,29465594,29467741,29470275,29471137,29473837,29480536,29481583,29484655,29486084,29486409,29487162,29488600,29490846,29493213,29494913,29495091,29499115,29512734,29522409,29523450,29524471,29526960,29529704,29530606,29531253,29532001,29532528,29535988,29550596,29554782,29555050,29563200,29569254,29634419	29458333,29458589,29462401,29463635,29465750,29467875,29470483,29471243,29473989,29480813,29481728,29484831,29486230,29486557,29487299,29488756,29491019,29493391,29495000,29495181,29499263,29512861,29522635,29524027,29524715,29527056,29529844,29530668,29531288,29532172,29533458,29536069,29551263,29554934,29555108,29563292,29569312,29634972	0.750000
thoracic_aorta_male_adult_37_years	chr12	113374529	113374566	113374565	+	RAMPAGE_only	5	5	14	0.519889	3.180833	chr12	113374588	113374752	SINE|MIR|MIR3	+	chr12	113358569	113391625	PLBD2|ENST00000280800.4	+	113358569,113369115,113372648,113374473,113374792,113380744,113384104,113384850,113385211,113386936,113387743,113388458	113358890,113369209,113372807,113374574,113375007,113380842,113384265,113384946,113385283,113387089,113387906,113391625	0.928571
thoracic_aorta_male_adult_37_years	chr16	69996417	69996464	69996417	-	High_confidence	9	9	26	0.965508	4.238901	chr16	69996297	69996477	SINE|MIR|MIRb	+	chr16	69976387	69996188	NPIPB14P|ENST00000532298.5	-	69976387,69978076,69978221,69982349,69982657,69986380,69996068	69976732,69978112,69978282,69982545,69982757,69986509,69996188	0.576923
thoracic_aorta_male_adult_37_years	chr9	120475282	120475283	120475282	-	RAMPAGE_only	4	4	6	0.222810	2.584963	chr9	120475028	120475260	SINE|MIR|MIRb	-	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.833333
thoracic_aorta_male_adult_37_years	chr3	37058793	37058907	37058906	-	RAMPAGE_only	17	19	82	3.045065	4.349524	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.975610
thoracic_aorta_male_adult_37_years	chr8	141417179	141417191	141417179	+	RAMPAGE_only	4	4	10	0.371349	2.725481	chr8	141417197	141417374	SINE|MIR|MIR	+	chr8	141416009	141431294	STRG.70842.7	+	141416009,141425047,141426938,141430926	141422345,141425140,141427824,141431294	0.900000
thoracic_aorta_male_adult_37_years	chr1	41186202	41186203	41186202	-	RAMPAGE_only	5	5	8	0.297080	2.521641	chr1	41186124	41186319	SINE|MIR|MIR1_Amn	+	chr1	41027199	41161481	SCMH1|ENST00000397171.6	-	41027199,41028583,41037361,41046406,41048689,41070594,41075218,41113282,41116921,41142877,41151613,41159724,41160874,41161363	41028319,41028726,41037541,41046598,41048890,41070721,41075451,41113526,41117010,41143112,41151684,41159933,41160898,41161481	0.750000
thoracic_aorta_male_adult_37_years	chr7	128638847	128638872	128638871	+	RAMPAGE_only	2	2	7	0.259945	2.584963	chr7	128638760	128639054	SINE|Alu|AluJr	-	chr7	128626292	128653243	STRG.64234.7	+	128626292,128629393,128631679,128638773,128642216,128648791,128651037,128651188	128626530,128629458,128631869,128641379,128642281,128648982,128651095,128653243	0.857143
thoracic_aorta_male_adult_37_years	chr6	140898419	140898424	140898421	-	High_confidence	5	7	13	0.482754	3.251629	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140575787	140898381	AL035446.2|ENST00000650553.1	-	140575787,140620907,140651477,140816131,140898187	140576557,140620995,140651561,140816230,140898381	0.538462
thoracic_aorta_male_adult_37_years	chr14	50139955	50140001	50139955	-	RAMPAGE_only	2	3	13	0.482754	3.251629	chr14	50139667	50139914	SINE|MIR|MIRb	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.923077
thoracic_aorta_male_adult_37_years	chr4	141212875	141212891	141212875	-	High_confidence	2	3	8	0.297080	2.521641	chr4	141212711	141212921	LTR|ERVL-MaLR|MSTA	-	chr4	140865570	141212877	RNF150|ENST00000420921.6	-	140865570,140911143,140925976,140947653,140949300,140967622,141053665,141212793	140868379,140911354,140926073,140947736,140949372,140967873,141053731,141212877	0.500000
thoracic_aorta_male_adult_37_years	chr4	153687951	153687952	153687951	+	RAMPAGE_only	6	6	8	0.297080	2.807355	chr4	153687920	153688176	LTR|ERV1|MER57A-int	+	chr4	153684289	153688669	TLR2|ENST00000645889.1	+	153684289,153687901,153688092	153684360,153687988,153688669	0.625000
thoracic_aorta_male_adult_37_years	chrX	118393264	118393271	118393270	+	High_confidence	4	5	8	0.297080	2.500000	chrX	118393300	118393615	SINE|Alu|AluJb	+	chrX	118392747	118449336	WDR44|ENST00000371848.3	+	118392747,118394054,118395248,118396969,118398386,118404337,118406874,118409488,118410894,118432780,118436701,118441367,118442243,118442564,118443559,118444359,118447059,118448892	118393271,118394185,118395344,118397106,118398470,118404444,118407026,118409627,118410959,118432894,118436824,118441559,118442345,118442680,118443687,118444494,118447114,118449336	1.000000
thoracic_aorta_male_adult_37_years	chr10	32446972	32446988	32446977	+	High_confidence	6	6	16	0.594159	3.750000	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	1.000000
thoracic_aorta_male_adult_37_years	chr7	128631769	128631770	128631769	+	RAMPAGE_only	5	6	7	0.259945	2.521641	chr7	128631488	128631793	SINE|Alu|AluJo	-	chr7	128626292	128653243	STRG.64234.7	+	128626292,128629393,128631679,128638773,128642216,128648791,128651037,128651188	128626530,128629458,128631869,128641379,128642281,128648982,128651095,128653243	1.000000
thoracic_aorta_male_adult_37_years	chr1	168137436	168137487	168137486	-	High_confidence	3	3	11	0.408484	3.459432	chr1	168137391	168137473	LINE|L2|L2b	-	chr1	168085277	168137583	GPR161|ENST00000367835.1	-	168085277,168087584,168090563,168096507,168104476,168114455,168137164	168085796,168087704,168090668,168097232,168104894,168114549,168137583	0.545455
thoracic_aorta_male_adult_37_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	32	32	35	1.299723	4.616875	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.828571
thoracic_aorta_male_adult_37_years	chr11	72111434	72111478	72111477	-	High_confidence	3	3	9	0.334214	2.947703	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72108817	72111497	ANAPC15|ENST00000538117.5	-	72108817,72109228,72110087,72110543,72111156,72111411	72108875,72109341,72110225,72110603,72111281,72111497	0.555556
thoracic_aorta_male_adult_37_years	chr2	241749357	241749358	241749357	+	RAMPAGE_only	4	4	7	0.259945	2.584963	chr2	241749253	241749384	LINE|L2|L2a	+	chr2	241734614	241768811	D2HGDH|ENST00000436747.5	+	241734614,241735132,241741032,241742434,241743638,241744708,241748864,241750150,241751245,241754630,241755044,241767709	241734695,241735516,241741090,241742574,241743815,241744877,241749929,241750294,241751388,241754746,241756014,241768811	0.714286
thoracic_aorta_male_adult_37_years	chr3	11226025	11226047	11226025	+	High_confidence	8	9	23	0.854104	4.001823	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.826087
thoracic_aorta_male_adult_37_years	chrX	136222393	136222465	136222393	-	RAMPAGE_only	9	10	43	1.596802	4.433635	chrX	136222161	136222377	SINE|MIR|MIR	-	chrX	136216813	136220813	MAP7D3|ENST00000471510.1	-	136216813,136219397,136219592,136220764	136217258,136219495,136219671,136220813	0.883721
thoracic_aorta_male_adult_37_years	chr15	84872303	84872327	84872303	+	RAMPAGE_only	4	4	9	0.334214	2.947703	chr15	84872013	84872720	LTR|ERVL|ERVL-E-int	-	chr15	84817495	84873482	STRG.110290.6	+	84817495,84823329,84827483,84838979,84839701,84856391,84859242,84859775,84860036,84863551,84864441,84867316,84868110	84817595,84823368,84827605,84839097,84840932,84858555,84859390,84859903,84862915,84863640,84864665,84867365,84873482	1.000000
thoracic_aorta_male_adult_37_years	chr11	119009516	119009539	119009538	+	High_confidence	3	3	10	0.371349	2.947703	chr11	119009425	119009710	LTR|ERVL|LTR75	-	chr11	119009533	119012177	CCDC84|ENST00000528088.1	+	119009533,119011220,119011938,119012148	119010830,119011311,119012003,119012177	0.900000
thoracic_aorta_male_adult_37_years	chr5	149426917	149427131	149426961	+	RAMPAGE_only	345	402	1998	74.195610	5.986470	chr5	149426901	149427031	SINE|Alu|FLAM_C	-	chr5	149406963	149436616	STRG.48061.1	+	149406963,149421480,149424089,149431575,149433812	149407078,149421601,149431481,149433705,149436616	1.000000
thoracic_aorta_male_adult_37_years	chr3	42872269	42872275	42872274	+	RAMPAGE_only	3	4	7	0.259945	2.807355	chr3	42872226	42872456	LINE|L2|L2c	-	chr3	42870591	42872793	STRG.26695.1	+	42870591	42872793	0.714286
thoracic_aorta_male_adult_37_years	chrY	19041486	19041487	19041486	-	RAMPAGE_only	7	7	8	0.297080	2.521641	chrY	19041345	19041622	LTR|ERV1|HERVIP10FH-int	-	chrY	19036389	19043784	STRG.141965.1	-	19036389	19043784	0.750000
thoracic_aorta_male_adult_37_years	chr19	16101294	16102051	16102050	+	RAMPAGE_only	47	48	834	30.970540	6.713134	chr19	16102068	16102357	SINE|Alu|AluSz	+	chr19	16099666	16102338	TPM4|ENST00000591226.1	+	16099666	16102338	0.877698
thoracic_aorta_male_adult_37_years	chrX	47179105	47179148	47179105	+	High_confidence	3	3	15	0.557024	3.521641	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	0.866667
thoracic_aorta_male_adult_37_years	chr9	111284874	111284875	111284874	-	High_confidence	8	8	10	0.371349	2.725481	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.800000
thoracic_aorta_male_adult_37_years	chr6	169222521	169222538	169222537	-	High_confidence	5	7	14	0.519889	3.392747	chr6	169222512	169222824	SINE|Alu|AluSx1	+	chr6	169216191	169223440	STRG.57519.5	-	169216191,169220197,169221429,169222196	169217829,169220337,169221527,169223440	0.500000
thoracic_aorta_male_adult_37_years	chr3	188883854	188884347	188884174	+	RAMPAGE_only	56	60	1007	37.394884	6.865322	chr3	188884141	188884305	SINE|MIR|MIRc	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.999007
thoracic_aorta_male_adult_37_years	chr4	39627120	39627121	39627120	-	High_confidence	8	8	9	0.334214	2.750000	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.888889
thoracic_aorta_male_adult_37_years	chr21	39178983	39179008	39179007	-	High_confidence	6	7	10	0.371349	2.921928	chr21	39178878	39179293	LTR|ERVL-MaLR|MSTB	+	chr21	39175457	39178820	PSMG1|ENST00000481921.5	-	39175457,39177434,39178448	39175664,39177571,39178820	0.900000
thoracic_aorta_male_adult_37_years	chr4	137700864	137700881	137700880	-	RAMPAGE_only	4	4	8	0.297080	2.750000	chr4	137700532	137701143	LTR|ERV1|LTR27D	+	chr4	137645264	137655174	AC116563.1|ENST00000505454.1	-	137645264,137648364,137652162,137655127	137645493,137648459,137652187,137655174	0.500000
thoracic_aorta_male_adult_37_years	chr6	83137194	83137247	83137246	+	RAMPAGE_only	23	26	51	1.893882	4.285581	chr6	83137223	83137263	SINE|tRNA|LFSINE_Vert	+	chr6	83130213	83147706	STRG.53437.4	+	83130213,83132175,83134186,83135618,83137172,83139999,83140220,83141920,83145523,83147235	83130397,83132328,83134287,83135878,83139162,83140111,83140403,83142046,83145658,83147706	1.000000
thoracic_aorta_male_adult_37_years	chr1	225866181	225866210	225866209	-	High_confidence	3	3	9	0.334214	2.947703	chr1	225866202	225866280	SINE|MIR|MIR3	-	chr1	225859662	225866211	TMEM63A|ENST00000474478.5	-	225859662,225862454,225862770,225863941	225862351,225862578,225863094,225866211	1.000000
thoracic_aorta_male_adult_37_years	chr19	51350335	51350371	51350355	-	RAMPAGE_only	3	3	14	0.519889	2.873141	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.928571
thoracic_aorta_male_adult_37_years	chr18	9588111	9588121	9588111	-	RAMPAGE_only	2	2	11	0.408484	3.277613	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9577063	9595061	PPP4R1|ENST00000580583.5	-	9577063,9584514,9584720,9588088,9588710,9593767,9595017	9577191,9584580,9584828,9588235,9588853,9593874,9595061	0.636364
thoracic_aorta_male_adult_37_years	chr14	74614942	74614957	74614956	-	RAMPAGE_only	6	9	16	0.594159	3.456565	chr14	74614923	74615241	LTR|ERV1|LTR78B	-	chr14	74500410	74612378	LTBP2|ENST00000553939.5	-	74500410,74501440,74502563,74503218,74503468,74503925,74504777,74504982,74506047,74506697,74507178,74507972,74508603,74508829,74509237,74509733,74510090,74511244,74516821,74521910,74522789,74525123,74526074,74527346,74528482,74528957,74532425,74535925,74549862,74551063,74552186,74552891,74555502,74585853,74603634,74611450	74501029,74501590,74502934,74503386,74503606,74504054,74504861,74505174,74506191,74506823,74507310,74508095,74508729,74508952,74509363,74509859,74510213,74511364,74516941,74522039,74522918,74525225,74526114,74527366,74528698,74529122,74532548,74536000,74549965,74551350,74552393,74553062,74555693,74586118,74603705,74612378	0.937500
thoracic_aorta_male_adult_37_years	chr2	215848877	215848878	215848877	-	RAMPAGE_only	88	90	113	4.196248	5.667260	chr2	215848652	215849119	LTR|ERVL|MER70B	-	chr2	215743819	215843722	LINC00607|ENST00000417922.1	-	215743819,215747303,215750242,215843325,215843623	215743914,215747394,215750417,215843423,215843722	0.699115
thoracic_aorta_male_adult_37_years	chr4	79195854	79195860	79195854	+	High_confidence	2	3	6	0.222810	2.584963	chr4	79195638	79196015	LTR|ERVL-MaLR|THE1C	+	chr4	79195836	79308755	LINC01088|ENST00000507476.5	+	79195836,79306690,79307063,79308272	79195932,79306728,79307231,79308755	0.666667
thoracic_aorta_male_adult_37_years	chr1	184974869	184974899	184974869	-	High_confidence	1	1	8	0.297080	2.521641	chr1	184974824	184974995	DNA|hAT-Charlie|MER5A	+	chr1	184791024	184974586	FAM129A|NM_052966.3	-	184791024,184798078,184803584,184805945,184808073,184818637,184823166,184823637,184831846,184884632,184890107,184894074,184899178,184974301	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184823742,184831962,184884800,184890222,184894206,184899309,184974586	0.625000
thoracic_aorta_male_adult_37_years	chrX	77046604	77046618	77046604	-	High_confidence	3	3	7	0.259945	2.521641	chrX	77046226	77052252	LINE|L1|L1PA3	+	chrX	76963332	77046336	STRG.138692.1	-	76963332,77046162	76963405,77046336	0.714286
thoracic_aorta_male_adult_37_years	chr4	184855574	184855653	184855652	-	High_confidence	18	19	58	2.153827	5.625054	chr4	184855538	184855766	LTR|ERVL-MaLR|MLT1J1	-	chr4	184843295	184855652	MIR3945HG|NR_132989.1	-	184843295,184850494,184855468	184844925,184850599,184855652	0.741379
thoracic_aorta_male_adult_37_years	chr11	13419689	13419721	13419689	-	RAMPAGE_only	5	5	13	0.482754	3.251629	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.923077
thoracic_aorta_male_adult_37_years	chr3	112602543	112602583	112602554	-	RAMPAGE_only	14	15	43	1.596802	4.392897	chr3	112601964	112603244	DNA|TcMar-Tigger|Tigger1	+	chr3	112596793	112641269	CCDC80|ENST00000206423.7	-	112596793,112607175,112609977,112616709,112618967,112630112,112638027,112640326	112605763,112607256,112610081,112616858,112619104,112630269,112639916,112641269	0.930233
thoracic_aorta_male_adult_37_years	chr2	217937254	217937255	217937254	-	High_confidence	15	15	19	0.705564	3.947703	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.789474
thoracic_aorta_male_adult_37_years	chr2	111367486	111367512	111367486	-	RAMPAGE_only	2	2	8	0.297080	2.500000	chr2	111367440	111367512	SINE|MIR|MIRc	+	chr2	111204985	111495033	STRG.17969.2	-	111204985,111233627,111248147,111344060,111365560,111494884	111208661,111233739,111248241,111344237,111367575,111495033	0.875000
thoracic_aorta_male_adult_37_years	chr10	68042311	68042332	68042311	-	RAMPAGE_only	4	4	10	0.371349	3.121928	chr10	68042018	68042306	SINE|Alu|AluSg7	-	chr10	68029802	68055866	STRG.80655.16	-	68029802,68038092	68034186,68055866	1.000000
thoracic_aorta_male_adult_37_years	chr8	120125627	120125637	120125636	+	High_confidence	8	8	16	0.594159	3.640224	chr8	120125674	120125869	DNA|hAT-Tip100?|MamRep1879	+	chr8	120125143	120277865	COL14A1|ENST00000432943.6	+	120125143,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120277484	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120277865	0.937500
thoracic_aorta_male_adult_37_years	chr14	81427424	81427462	81427461	-	High_confidence	4	4	14	0.519889	3.180833	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.928571
thoracic_aorta_male_adult_37_years	chr7	6044569	6044644	6044570	-	RAMPAGE_only	5	8	41	1.522533	2.868947	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6041152	6046437	EIF2AK1|ENST00000470168.1	-	6041152,6042932,6044561,6046070	6041219,6042993,6044661,6046437	0.829268
thoracic_aorta_male_adult_37_years	chr3	188877503	188877519	188877518	+	RAMPAGE_only	28	32	64	2.376636	5.421570	chr3	188877563	188877737	SINE|Alu|AluJr	+	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
thoracic_aorta_male_adult_37_years	chr20	49506662	49506712	49506686	-	RAMPAGE_only	6	7	24	0.891239	3.732159	chr20	49506365	49506657	SINE|Alu|AluSz6	-	chr20	49503873	49568146	PTGIS|ENST00000244043.4	-	49503873,49511027,49513079,49514226,49524057,49539569,49544304,49547840,49550065,49568042	49508064,49511179,49513261,49514395,49524239,49539721,49544448,49548019,49550189,49568146	0.916667
thoracic_aorta_male_adult_37_years	chr22	49657346	49657356	49657346	-	High_confidence	7	7	18	0.668429	3.734522	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.722222
thoracic_aorta_male_adult_37_years	chr5	149417806	149418234	149417977	+	RAMPAGE_only	56	60	745	27.665530	5.961425	chr5	149417828	149417979	SINE|MIR|MIR3	+	chr5	149407244	149424381	STRG.48061.10	+	149407244,149421480,149423433	149420544,149423309,149424381	0.995973
thoracic_aorta_male_adult_37_years	chr11	20061910	20061933	20061932	+	RAMPAGE_only	5	5	11	0.408484	3.277613	chr11	20061856	20062077	LINE|L1|L1ME4a	+	chr11	19877624	20080184	STRG.85312.11	+	19877624,19892433,19933175,19939660,19946400,19948690,19984124,20035958,20043980,20044967,20048727,20049835,20055768,20068185,20068323,20077551,20077992,20080063	19880127,19892594,19934277,19939773,19946509,19949080,19984247,20036097,20044272,20045670,20049195,20054240,20062359,20068209,20068398,20077635,20078104,20080184	0.727273
thoracic_aorta_male_adult_37_years	chr8	118054461	118054834	118054520	-	RAMPAGE_only	16	19	266	9.877894	6.209025	chr8	118054490	118054728	SINE|MIR|MIRb	-	chr8	117997316	118079630	STRG.69914.7	-	117997316,118032172	118032099,118079630	0.992481
thoracic_aorta_male_adult_37_years	chr11	7906253	7906254	7906253	-	High_confidence	9	10	13	0.482754	3.251629	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.615385
thoracic_aorta_male_adult_37_years	chr1	205862297	205862298	205862297	+	RAMPAGE_only	7	7	8	0.297080	2.807355	chr1	205858178	205862406	LTR|ERVK|HERVK14-int	+	chr1	205861071	205867751	STRG.9970.1	+	205861071	205867751	0.875000
thoracic_aorta_male_adult_37_years	chr11	12221458	12221479	12221469	+	RAMPAGE_only	3	3	10	0.371349	2.725481	chr11	12221153	12221586	LINE|L2|L2c	+	chr11	12207724	12263785	MICAL2|ENST00000530691.5	+	12207724,12209496,12213254,12216218,12220200,12221643,12222616,12223410,12224672,12226170,12227024,12236176,12239435,12256784,12258467,12259794	12208139,12209598,12213410,12216319,12220458,12221759,12222743,12223501,12224820,12226370,12227131,12236245,12239585,12256971,12258556,12263785	0.900000
thoracic_aorta_male_adult_37_years	chr3	124693813	124693822	124693821	+	RAMPAGE_only	6	8	10	0.371349	2.921928	chr3	124693862	124694030	LINE|L1|L1ME4b	+	chr3	124584658	124726325	KALRN|ENST00000291478.9	+	124584658,124632419,124633848,124637207,124650807,124655600,124657447,124657733,124658430,124659364,124660922,124661850,124666448,124667011,124671659,124674360,124678189,124679457,124693803,124694331,124696133,124697592,124699868,124702037,124712934,124717246,124718924	124584906,124632703,124633953,124637303,124650938,124655667,124657551,124657803,124658517,124659457,124660973,124661928,124666634,124667183,124671898,124674614,124678313,124679517,124693831,124694503,124696255,124697724,124700033,124702116,124713135,124717385,124726325	1.000000
thoracic_aorta_male_adult_37_years	chr1	155954904	155954926	155954904	-	RAMPAGE_only	2	2	6	0.222810	2.584963	chr1	155954717	155954897	LINE|L1|L1ME4b	-	chr1	155947366	155952721	ARHGEF2|ENST00000368315.8	-	155947366,155950298,155950828,155950873,155951482,155951740,155951918,155952115,155952627	155948015,155950482,155950872,155951272,155951533,155951776,155951986,155952235,155952721	0.833333
thoracic_aorta_male_adult_37_years	chr6	118651563	118651626	118651592	-	High_confidence	15	16	75	2.785120	4.994107	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	1.000000
thoracic_aorta_male_adult_37_years	chr6	107872863	107872894	107872888	-	RAMPAGE_only	2	3	12	0.445619	3.277613	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.916667
thoracic_aorta_male_adult_37_years	chr3	33838280	33838293	33838292	+	RAMPAGE_only	2	2	8	0.297080	2.807355	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.750000
thoracic_aorta_male_adult_37_years	chr1	184793400	184793568	184793567	-	RAMPAGE_only	55	55	257	9.543680	5.359919	chr1	184793278	184793583	SINE|Alu|AluSz	+	chr1	184791029	184974550	FAM129A|ENST00000367511.3	-	184791029,184798078,184803584,184805945,184808073,184818637,184823166,184823637,184831846,184884632,184890107,184894074,184899178,184974301	184796097,184798190,184803692,184806056,184808235,184818825,184823329,184823742,184831962,184884800,184890222,184894206,184899309,184974550	1.000000
thoracic_aorta_male_adult_37_years	chr19	37465439	37465463	37465439	-	RAMPAGE_only	4	4	8	0.297080	2.750000	chr19	37464765	37465454	LINE|L2|L2a	+	chr19	37411154	37467229	ZNF569|ENST00000392149.6	-	37411154,37425867,37426251,37444906,37467086	37414419,37425963,37426378,37444964,37467229	0.875000
thoracic_aorta_male_adult_37_years	chr5	149418534	149418641	149418584	+	RAMPAGE_only	39	43	158	5.867320	5.205363	chr5	149418497	149418798	SINE|Alu|AluSx	-	chr5	149407244	149424381	STRG.48061.10	+	149407244,149421480,149423433	149420544,149423309,149424381	0.981013
thoracic_aorta_male_adult_37_years	chr5	172923753	172923765	172923757	+	RAMPAGE_only	3	3	10	0.371349	2.721928	chr5	172923703	172923933	SINE|MIR|MIRb	-	chr5	172922144	172932511	ERGIC1|ENST00000521392.5	+	172922144,172924004,172926508,172932435	172922468,172924109,172926569,172932511	0.800000
thoracic_aorta_male_adult_37_years	chr2	32477567	32477581	32477567	+	RAMPAGE_only	3	3	8	0.297080	3.000000	chr2	32477616	32477749	SINE|Alu|AluJb	+	chr2	32436074	32611581	STRG.14234.2	+	32436074,32439507,32441328,32442064,32442323,32443490,32445520,32448794,32453807,32463193,32464508,32465064,32467524,32467902,32468436,32469394,32470167,32471013,32473111,32476212,32477367,32478634,32479461,32481319,32482428,32485642,32487646,32488587,32490040,32491424,32493539,32499546,32501712,32502794,32503041,32505004,32507979,32509737,32510525,32512932,32514989,32518253,32518816,32524887,32525463,32529650,32531354,32543240,32545642,32547849,32549312,32575155,32593914,32595033,32597750,32599738,32603005,32607454,32611447	32436184,32439686,32441462,32442226,32442455,32443588,32445668,32448928,32453942,32463381,32464823,32465164,32467739,32468111,32468783,32469614,32470301,32471151,32473239,32476344,32477583,32478818,32479617,32481453,32482582,32485759,32487801,32488714,32490151,32491558,32493667,32500109,32501888,32502891,32503236,32505205,32508259,32509994,32510634,32513154,32515770,32518397,32518946,32525019,32525628,32529824,32531551,32543541,32545860,32548014,32549481,32575366,32594060,32595144,32597968,32599900,32603083,32607643,32611581	0.875000
thoracic_aorta_male_adult_37_years	chr1	52911575	52911608	52911575	-	RAMPAGE_only	3	3	14	0.519889	3.039149	chr1	52911549	52911601	LINE|RTE-BovB|MamRTE1	+	chr1	52907447	52927212	ECHDC2|ENST00000544365.5	-	52907447,52911565,52911722,52913894,52921552,52927108	52907954,52911653,52911790,52914095,52921919,52927212	0.500000
thoracic_aorta_male_adult_37_years	chr9	128993644	128993645	128993644	+	RAMPAGE_only	4	5	7	0.259945	2.521641	chr9	128993691	128993806	SINE|MIR|MIR	+	chr9	128995135	128998596	NUP188|ENST00000495726.1	+	128995135,128998150,128998537	128995514,128998228,128998596	0.714286
thoracic_aorta_male_adult_37_years	chr19	10379712	10379722	10379712	-	High_confidence	7	8	12	0.445619	2.913977	chr19	10379599	10379809	SINE|MIR|MIRb	+	chr19	10368328	10380510	TYK2|ENST00000530829.1	-	10368328,10369756,10378213,10379614,10380379	10368418,10369877,10378426,10379779,10380510	0.916667
thoracic_aorta_male_adult_37_years	chr22	31082940	31082941	31082940	+	High_confidence	15	15	21	0.779834	3.787144	chr22	31082905	31083026	SINE|MIR|MIRc	-	chr22	31082859	31104623	SMTN|ENST00000619644.4	+	31082859,31083178,31087964,31088512,31088698,31088871,31089698,31090107,31090807,31090960,31091674,31093783,31095302,31095533,31096732,31096997,31097268,31098666,31099061,31099744,31104315	31083002,31083309,31088113,31088606,31088777,31088969,31090019,31090180,31090879,31091482,31091847,31093876,31095455,31095609,31096897,31097060,31097338,31098840,31099179,31099896,31104623	0.809524
thoracic_aorta_male_adult_37_years	chr17	8310341	8310342	8310341	+	High_confidence	6	6	6	0.222810	2.584963	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310282	8322516	ARHGEF15|ENST00000361926.7	+	8310282,8311990,8312921,8313500,8314905,8315065,8315413,8315754,8316018,8318386,8318569,8318749,8319006,8319311,8319498,8320841	8310343,8312640,8313254,8313555,8314964,8315277,8315574,8315907,8316148,8318461,8318662,8318910,8319159,8319394,8319603,8322516	1.000000
thoracic_aorta_male_adult_37_years	chr5	103129605	103129651	103129650	+	High_confidence	4	5	11	0.408484	3.321928	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	0.727273
thoracic_aorta_male_adult_37_years	chr13	30376953	30376965	30376953	-	High_confidence	5	5	14	0.519889	3.392747	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30374002	30376964	LINC00426|ENST00000416261.1	-	30374002,30375466,30376826	30374093,30375776,30376964	0.714286
thoracic_aorta_male_adult_37_years	chr1	145904532	145904801	145904532	-	RAMPAGE_only	24	27	307	11.400427	6.885685	chr1	145904394	145904636	SINE|Alu|AluJr	-	chr1	145891213	145910090	STRG.7142.3	-	145891213,145893160,145893539,145895279,145895630,145895982,145896267,145896768,145897010,145897246,145897511,145897814,145898109,145898935,145899174,145900056,145900789,145901134,145901515,145901876,145902245,145902453,145902810,145904051,145906393,145906732,145907040,145909962	145892863,145893274,145893635,145895393,145895711,145896096,145896352,145896858,145897087,145897339,145897653,145897900,145898223,145899078,145899341,145900187,145900993,145901278,145901664,145902021,145902319,145902619,145902961,145904811,145906508,145906824,145907465,145910090	0.983713
thoracic_aorta_male_adult_37_years	chr10	51506315	51506404	51506315	+	RAMPAGE_only	25	26	113	4.196248	5.558574	chr10	51506023	51507313	LINE|L1|L1PA4	+	chr10	51074569	51512165	STRG.80527.10	+	51074569,51153163,51467722,51479498	51074901,51153330,51479455,51512165	0.991150
thoracic_aorta_male_adult_37_years	chr9	99023359	99023425	99023424	+	RAMPAGE_only	3	4	19	0.705564	3.794653	chr9	99023460	99023631	LINE|L1|L1MC5	+	chr9	98943712	99070792	COL15A1|NM_001855.4	+	98943712,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.842105
thoracic_aorta_male_adult_37_years	chr9	129489073	129489131	129489125	+	High_confidence	27	32	74	2.747986	5.331529	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.810811
thoracic_aorta_male_adult_37_years	chr5	95509594	95509600	95509594	-	RAMPAGE_only	6	7	12	0.445619	3.251629	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95502902	95516674	TTC37|ENST00000508181.5	-	95502902,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524	95503003,95503938,95506992,95509687,95512618,95513645,95514923,95516409,95516674	0.583333
thoracic_aorta_male_adult_37_years	chr12	2190618	2190674	2190618	+	RAMPAGE_only	3	3	18	0.668429	3.794653	chr12	2190508	2190686	LINE|L2|L2c	-	chr12	2177572	2193991	STRG.90874.1	+	2177572	2193991	1.000000
thoracic_aorta_male_adult_37_years	chr5	64788993	64789019	64789018	+	RAMPAGE_only	3	3	6	0.222810	2.584963	chr5	64789056	64789153	LINE|L2|L2b	+	chr5	64800244	64804907	CWC27|ENST00000506168.1	+	64800244,64801301,64804228	64800327,64801332,64804907	0.833333
thoracic_aorta_male_adult_37_years	chr2	27662198	27662261	27662260	-	RAMPAGE_only	9	9	23	0.854104	4.368523	chr2	27662206	27662384	LINE|L2|L2c	-	chr2	27660926	27663622	STRG.13776.6	-	27660926,27663323	27662281,27663622	0.956522
thoracic_aorta_male_adult_37_years	chr19	58311968	58311969	58311968	+	RAMPAGE_only	4	4	7	0.259945	2.521641	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.857143
thoracic_aorta_male_adult_37_years	chr11	119110890	119110922	119110890	+	High_confidence	10	11	21	0.779834	4.106603	chr11	119110843	119110902	LINE|CR1|L3b	+	chr11	119111056	119117121	C2CD2L|ENST00000528586.2	+	119111056,119111262,119111520,119112327,119112481,119112699,119113610,119113854,119114079,119116024	119111168,119111374,119111629,119112392,119112609,119112874,119113712,119113988,119114365,119117121	0.952381
thoracic_aorta_male_adult_37_years	chrY	12686572	12686590	12686572	+	RAMPAGE_only	10	13	20	0.742699	2.808695	chrY	12685409	12686624	LTR|ERV1|MER4-int	+	chrY	12701230	12860839	USP9Y|ENST00000338981.7	+	12701230,12708633,12709387,12720588,12722107,12725112,12726574,12735611,12735997,12736410,12738156,12739524,12757191,12758505,12760483,12771067,12773582,12775470,12776648,12778018,12778605,12779525,12786202,12786521,12790406,12791498,12793031,12810178,12810671,12811634,12812829,12816123,12818419,12833687,12837910,12839863,12841009,12842239,12843063,12846332,12846932,12847238,12856339,12856632,12857565,12859278	12702055,12708693,12709543,12720737,12722187,12725225,12726793,12735727,12736249,12736549,12738309,12739629,12757398,12758642,12760617,12771155,12773925,12775566,12776860,12778259,12778755,12779646,12786333,12786800,12790532,12791624,12793201,12810287,12810818,12811781,12813052,12816344,12818610,12833861,12838052,12840614,12841133,12842465,12843193,12846518,12847153,12847327,12856496,12856845,12857661,12860839	0.950000
thoracic_aorta_male_adult_37_years	chr16	15732843	15732849	15732848	-	RAMPAGE_only	3	3	7	0.259945	2.584963	chr16	15732761	15733017	SINE|MIR|MIRc	+	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.857143
thoracic_aorta_male_adult_37_years	chr9	6251199	6251241	6251232	+	RAMPAGE_only	4	4	19	0.705564	3.947703	chr9	6251008	6251757	DNA|hAT-Charlie|Charlie17b	+	chr9	6241694	6257982	IL33|ENST00000456383.3	+	6241694,6250473,6251139,6253551,6254461,6255967	6241785,6250599,6251265,6253602,6254553,6257982	0.842105
thoracic_aorta_male_adult_37_years	chr11	19717229	19717565	19717369	+	RAMPAGE_only	39	53	475	17.639096	6.502538	chr11	19717251	19717494	LINE|L2|L2c	-	chr11	19713596	20080184	STRG.85312.8	+	19713596,19832483,19842870,19868924,19879868,19892433,19933175,19939660,19946400,19948690,19984124,20035958,20043980,20044967,20048727,20049835,20051288,20055768,20068185,20068323,20077551,20077992,20080063	19777517,19832601,19842923,19868997,19880127,19892594,19934277,19939773,19946509,19949080,19984247,20036097,20044272,20045670,20049195,20049901,20054240,20062359,20068209,20068398,20077635,20078104,20080184	1.000000
thoracic_aorta_male_adult_37_years	chr4	86453293	86453342	86453324	-	High_confidence	3	4	18	0.668429	3.572469	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453325	MAPK10|ENST00000641313.1	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86354644,86453325	0.777778
thoracic_aorta_male_adult_37_years	chr8	22392883	22392884	22392883	+	High_confidence	11	11	14	0.519889	3.324863	chr8	22392932	22392982	LINE|L2|L2b	+	chr8	22392829	22404870	SLC39A14|ENST00000520832.1	+	22392829,22404695	22393232,22404870	1.000000
thoracic_aorta_male_adult_37_years	chr4	99157539	99157548	99157541	+	RAMPAGE_only	5	7	18	0.668429	3.690117	chr4	99157498	99157699	SINE|MIR|MIRb	-	chr4	99088876	99206748	STRG.37567.1	+	99088876,99133554,99154553,99159420,99204356	99089284,99133805,99157579,99159622,99206748	0.555556
thoracic_aorta_male_adult_37_years	chr10	110881148	110881149	110881148	+	High_confidence	4	4	7	0.259945	2.807355	chr10	110881075	110881155	DNA|TcMar-Mariner|MADE2	+	chr10	110880318	110887798	PDCD4|ENST00000492932.5	+	110880318,110881232,110883002,110885252,110887664	110880485,110881535,110883097,110885366,110887798	1.000000
thoracic_aorta_male_adult_37_years	chr16	15020825	15020837	15020825	+	High_confidence	4	4	8	0.297080	2.750000	chr16	15020701	15020967	SINE|Alu|AluSx1	+	chr16	15020589	15036678	STRG.112395.8	+	15020589,15026642,15028877,15029950,15031734,15032860,15033277,15035448	15022754,15026706,15028966,15030056,15031906,15032979,15034553,15036678	0.875000
thoracic_aorta_male_adult_37_years	chr1	1721677	1721705	1721704	-	High_confidence	9	9	29	1.076913	4.310443	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.862069
thoracic_aorta_male_adult_37_years	chr11	123071268	123071359	123071268	-	RAMPAGE_only	5	5	42	1.559667	4.669352	chr11	123071151	123071444	SINE|Alu|AluSx	+	chr11	123069864	123195281	CLMP|ENST00000448775.3	-	123069864,123074701,123083084,123083679,123084511,123097794,123194912	123073774,123074843,123083207,123083847,123084713,123097952,123195281	1.000000
thoracic_aorta_male_adult_37_years	chr14	91883349	91883358	91883349	-	RAMPAGE_only	6	7	12	0.445619	2.663533	chr14	91883123	91883337	LINE|CR1|L3	-	chr14	91870042	91947074	FBLN5|ENST00000556154.5	-	91870042,91877486,91881291,91882953,91887192,91891220,91894949,91936946,91940564,91942906,91946710	91870385,91877682,91881418,91883076,91887312,91891337,91895072,91937201,91940616,91942961,91947074	0.500000
thoracic_aorta_male_adult_37_years	chr3	33864081	33864119	33864090	+	RAMPAGE_only	5	5	26	0.965508	4.168296	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.923077
thoracic_aorta_male_adult_37_years	chr10	95399336	95399458	95399457	-	RAMPAGE_only	6	6	36	1.336858	5.003258	chr10	95399346	95399491	DNA|hAT-Charlie|MER58A	+	chr10	95384050	95413764	SORBS1|ENST00000465489.1	-	95384050,95384237,95397219,95399016,95406117,95410632,95413552	95384114,95384285,95397283,95399189,95406147,95410777,95413764	0.611111
thoracic_aorta_male_adult_37_years	chr3	64602350	64602500	64602470	-	RAMPAGE_only	5	5	45	1.671072	4.819305	chr3	64602423	64602956	LINE|L2|L2a	+	chr3	64521480	64616150	ADAMTS9|ENST00000481060.2	-	64521480,64522165,64533165,64539202,64541094,64541319,64541525,64541837,64546757,64550891,64561577,64568367,64594257,64596829,64601943,64603921,64604226,64606959,64613344,64615320,64615959	64521668,64522260,64533270,64539294,64541228,64541414,64541620,64541970,64546952,64551062,64561751,64568535,64594434,64596991,64602213,64604089,64604331,64607079,64613509,64615485,64616150	0.755556
thoracic_aorta_male_adult_37_years	chr12	7115158	7115173	7115158	+	RAMPAGE_only	4	4	8	0.297080	2.521641	chr12	7114990	7115194	LINE|L2|L2b	+	chr12	7108307	7121851	C1RL-AS1|NR_026947.1	+	7108307,7108672,7110063,7110297,7111024,7112006,7115129,7115385,7118898,7119499,7120505,7121711	7108481,7108947,7110147,7110572,7111606,7112064,7115219,7118677,7119026,7119553,7120625,7121851	0.750000
thoracic_aorta_male_adult_37_years	chr11	65429831	65430845	65430815	+	RAMPAGE_only	155	160	3855	143.155193	7.307065	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.997665
thoracic_aorta_male_adult_37_years	chr13	45379308	45379320	45379308	+	RAMPAGE_only	2	2	7	0.259945	2.521641	chr13	45378752	45379338	LTR|ERV1|HERVE-int	-	chr13	45341512	45391737	TPT1-AS1|ENST00000524062.5	+	45341512,45344304,45377060,45378529,45379194,45383090,45389734,45391031	45341614,45344446,45377215,45378671,45380001,45383235,45389820,45391737	1.000000
thoracic_aorta_male_adult_37_years	chr6	143964791	143964822	143964791	-	High_confidence	2	2	10	0.371349	2.947703	chr6	143964544	143965292	LTR|Gypsy|MamGyp-int	+	chr6	143940337	143964868	PLAGL1|ENST00000367572.3	-	143940337,143960468,143964786	143942663,143960556,143964868	0.900000
thoracic_aorta_male_adult_37_years	chr19	19349164	19349186	19349185	+	High_confidence	3	3	8	0.297080	2.521641	chr19	19349195	19349248	LINE|L1|X9_LINE	+	chr19	19348714	19354610	MAU2|ENST00000589947.7	+	19348714,19349154,19349324,19354354	19348938,19349232,19349436,19354610	0.500000
thoracic_aorta_male_adult_37_years	chr15	87981290	87981326	87981325	-	RAMPAGE_only	4	4	11	0.408484	3.121928	chr15	87981217	87981350	SINE|MIR|MIR3	+	chr15	87979053	88127191	NTRK3|ENST00000558306.1	-	87979053,88032856,88127161	87979463,88033045,88127191	0.818182
thoracic_aorta_male_adult_37_years	chr10	89888921	89888931	89888929	+	High_confidence	12	13	23	0.854104	4.165894	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89888951	89914898	STRG.81763.2	+	89888951,89914635	89889166,89914898	0.565217
thoracic_aorta_male_adult_37_years	chr14	50754773	50754774	50754773	-	RAMPAGE_only	5	7	7	0.259945	2.807355	chr14	50754738	50754803	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
thoracic_aorta_male_adult_37_years	chr7	128655576	128655597	128655596	+	RAMPAGE_only	2	2	7	0.259945	2.584963	chr7	128655512	128655817	SINE|Alu|AluSg	+	chr7	128641240	128660998	LINC01000|NR_024368.1	+	128641240,128642216,128648791,128651037,128651188	128641379,128642281,128648982,128651095,128660998	0.714286
thoracic_aorta_male_adult_37_years	chr11	12249193	12249239	12249200	+	RAMPAGE_only	13	16	97	3.602089	5.206632	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.752577
thoracic_aorta_male_adult_37_years	chrX	91418859	91418860	91418859	-	RAMPAGE_only	4	4	7	0.259945	2.807355	chrX	91418756	91418870	DNA|hAT-Blackjack|MER81	+	chrX	91414877	91434999	PABPC5-AS1|ENST00000456187.1	-	91414877,91418324,91418783,91434902	91415049,91418393,91418871,91434999	0.714286
thoracic_aorta_male_adult_37_years	chr6	127330839	127330860	127330839	-	High_confidence	2	3	9	0.334214	2.947703	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	1.000000
thoracic_aorta_male_adult_37_years	chr9	88418934	88418956	88418934	+	High_confidence	2	3	9	0.334214	2.500000	chr9	88418784	88418941	SINE|MIR|MIR	+	chr9	88418350	88475203	STRG.74291.2	+	88418350,88426381,88448940,88462495,88468371,88475077	88418951,88426591,88448989,88462749,88468605,88475203	0.555556
thoracic_aorta_male_adult_37_years	chr17	82081606	82081652	82081606	-	RAMPAGE_only	15	15	36	1.336858	4.537845	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079331	82085660	STRG.120425.6	-	82079331,82080139,82080369,82080691,82081163,82081600,82081939,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481	82079608,82080238,82080590,82080922,82081352,82081881,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085660	0.972222
thoracic_aorta_male_adult_37_years	chr7	100349766	100349813	100349766	+	RAMPAGE_only	4	4	14	0.519889	3.546594	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336124	100353692	STRG.62406.8	+	100336124,100338178,100338772,100345864,100352563,100352996,100353209,100353372	100336220,100338264,100338889,100352478,100352914,100353123,100353270,100353692	0.928571
thoracic_aorta_male_adult_37_years	chr20	50267474	50267502	50267474	+	High_confidence	9	14	55	2.042422	4.991703	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.909091
thoracic_aorta_male_adult_37_years	chr12	53464773	53464778	53464773	+	RAMPAGE_only	2	4	8	0.297080	2.521641	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.875000
thoracic_aorta_male_adult_37_years	chr5	177487026	177487075	177487032	-	RAMPAGE_only	23	23	61	2.265231	4.244656	chr5	177486968	177487223	SINE|Alu|AluSx	-	chr5	177483397	177492572	STRG.48997.18	-	177483397,177483866,177484069,177489392,177489770,177490869,177491009,177491403,177492404,177492525	177483730,177483982,177488248,177489627,177489832,177490906,177491146,177491420,177492435,177492572	0.934426
thoracic_aorta_male_adult_37_years	chr9	39810023	39810034	39810033	-	High_confidence	14	14	22	0.816969	4.021928	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.727273
thoracic_aorta_male_adult_37_years	chr16	15125917	15125935	15125917	-	High_confidence	2	2	7	0.259945	2.521641	chr16	15125899	15126034	DNA|hAT-Charlie|MER3	+	chr16	15104329	15125948	STRG.112387.9	-	15104329,15106114,15106259,15107329,15110413,15110721,15114442,15118925,15123290	15104758,15106150,15106320,15107437,15110558,15110821,15114571,15119054,15125948	1.000000
thoracic_aorta_male_adult_37_years	chr11	118655340	118655358	118655357	+	RAMPAGE_only	3	3	6	0.222810	2.584963	chr11	118655017	118655463	LINE|L1|L1MC4a	-	chr11	118650600	118657490	PHLDB1|ENST00000620788.1	+	118650600,118656682	118655690,118657490	0.666667
thoracic_aorta_male_adult_37_years	chr5	149409451	149409642	149409585	+	RAMPAGE_only	102	126	970	36.020892	6.489761	chr5	149409401	149409639	SINE|MIR|MIRb	-	chr5	149407244	149412768	CARMN|ENST00000614517.1	+	149407244	149412768	1.000000
thoracic_aorta_male_adult_37_years	chr4	79086177	79086180	79086179	+	High_confidence	10	17	18	0.668429	4.087463	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.500000
thoracic_aorta_male_adult_37_years	chr12	124374423	124374443	124374423	-	High_confidence	3	3	8	0.297080	2.521641	chr12	124374395	124374495	LINE|CR1|L3b	+	chr12	124360737	124373729	STRG.97921.29	-	124360737,124372021	124363799,124373729	0.625000
thoracic_aorta_male_adult_37_years	chr2	102141879	102141907	102141906	+	RAMPAGE_only	4	4	12	0.445619	3.084963	chr2	102141941	102142029	SINE|MIR|MIR3	+	chr2	102104568	102176759	STRG.17704.7	+	102104568,102157718,102164773,102165114,102166112,102168597,102171800,102172686,102174586,102175477,102176352	102154017,102157785,102165008,102165304,102166281,102168663,102171918,102172838,102174730,102175645,102176759	1.000000
thoracic_aorta_male_adult_37_years	chr16	15798662	15798670	15798664	-	RAMPAGE_only	389	503	825	30.636325	6.526457	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.894545
thoracic_aorta_male_adult_37_years	chr5	60533916	60533920	60533919	+	RAMPAGE_only	113	137	208	7.724067	5.054591	chr5	60533762	60534097	LTR|ERVL-MaLR|MSTD	+	chr5	60546218	60546349	RF02161|ENST00000619680.1	+	60546218	60546349	0.759615
thoracic_aorta_male_adult_37_years	chr20	44746203	44746259	44746253	-	High_confidence	29	34	167	6.201535	6.220588	chr20	44746252	44746334	SINE|MIR|MIR3	+	chr20	44695201	44746255	STRG.129719.1	-	44695201,44716624,44738819,44745964	44695507,44716793,44738934,44746255	0.802395
thoracic_aorta_male_adult_37_years	chr18	9593969	9593982	9593981	-	RAMPAGE_only	4	5	11	0.408484	3.121928	chr18	9593938	9594229	SINE|Alu|AluJb	-	chr18	9577063	9595061	PPP4R1|ENST00000580583.5	-	9577063,9584514,9584720,9588088,9588710,9593767,9595017	9577191,9584580,9584828,9588235,9588853,9593874,9595061	0.545455
thoracic_aorta_male_adult_37_years	chr20	49506853	49507004	49507003	-	RAMPAGE_only	17	20	87	3.230740	4.864304	chr20	49506783	49507064	DNA|hAT-Charlie|MER102b	-	chr20	49503873	49568146	PTGIS|ENST00000244043.4	-	49503873,49511027,49513079,49514226,49524057,49539569,49544304,49547840,49550065,49568042	49508064,49511179,49513261,49514395,49524239,49539721,49544448,49548019,49550189,49568146	0.977011
thoracic_aorta_male_adult_37_years	chr2	55654901	55654927	55654906	-	RAMPAGE_only	3	3	13	0.482754	3.251629	chr2	55654742	55654866	SINE|Alu|AluJr	-	chr2	55636369	55647382	PNPT1|ENST00000481066.1	-	55636369,55637551,55640626,55643157,55643318,55644636,55646258,55646414,55647346	55636392,55637599,55640705,55643213,55643425,55645432,55646322,55646486,55647382	0.846154
thoracic_aorta_male_adult_37_years	chr1	153967482	153967504	153967486	+	High_confidence	9	9	22	0.816969	3.784184	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.727273
thoracic_aorta_male_adult_37_years	chr19	10825199	10825216	10825214	+	RAMPAGE_only	3	6	12	0.445619	2.913977	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	0.916667
thoracic_aorta_male_adult_37_years	chr18	9117532	9117557	9117532	+	High_confidence	2	2	14	0.519889	3.085055	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9117525	9119566	NDUFV2|ENST00000483511.1	+	9117525,9117837,9119325,9119473	9117638,9117903,9119388,9119566	0.571429
thoracic_aorta_male_adult_37_years	chr7	99410146	99410147	99410146	+	High_confidence	13	13	17	0.631294	3.852169	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.705882
thoracic_aorta_male_adult_37_years	chr11	114260449	114260766	114260765	+	RAMPAGE_only	29	29	410	15.225325	5.008507	chr11	114260815	114261064	SINE|MIR|MIRc	+	chr11	114059592	114312515	STRG.89637.1	+	114059592,114063210,114156336,114186951,114242166,114247197,114250325,114293681	114061561,114064568,114156434,114187038,114242337,114247365,114293447,114312515	0.997561
thoracic_aorta_male_adult_37_years	chr11	65541126	65541181	65541126	-	High_confidence	4	4	12	0.445619	3.584963	chr11	65541043	65541115	SINE|MIR|MIRb	-	chr11	65539194	65540683	LTBP3|ENST00000532661.5	-	65539194,65539327,65539547,65539719,65540244,65540485	65539231,65539459,65539628,65539881,65540382,65540683	0.583333
thoracic_aorta_male_adult_37_years	chr20	18794063	18794086	18794085	+	High_confidence	21	21	57	2.116692	3.521126	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.964912
thoracic_aorta_male_adult_37_years	chr8	22101194	22101195	22101194	+	High_confidence	5	5	8	0.297080	2.807355	chr8	22101007	22101322	SINE|Alu|AluSx	-	chr8	22101189	22104379	STRG.66510.7	+	22101189,22101707,22102174,22102527	22101530,22101851,22102315,22104379	0.875000
thoracic_aorta_male_adult_37_years	chr22	50785201	50785227	50785222	+	RAMPAGE_only	11	13	26	0.965508	4.161978	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.884615
thoracic_aorta_male_adult_37_years	chr14	50756673	50756693	50756673	-	RAMPAGE_only	4	4	14	0.519889	3.664498	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.642857
thoracic_aorta_male_adult_37_years	chr7	40509494	40509498	40509494	+	High_confidence	193	196	439	16.302239	7.488189	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40509134	41034535	STRG.59941.1	+	40509134,40749433,40860315,40881680,41029023,41032357	40509545,40749497,40860631,40881854,41029246,41034535	0.605923
thoracic_aorta_male_adult_37_years	chr10	65570519	65570536	65570535	+	High_confidence	3	3	9	0.334214	2.750000	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570874	65615757	LINC01515|ENST00000593568.1	+	65570874,65572934,65585484,65615635	65571579,65573056,65585567,65615757	0.666667
thoracic_aorta_male_adult_37_years	chrX	48683361	48683363	48683362	+	High_confidence	35	66	66	2.450906	4.894859	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.954545
thoracic_aorta_male_adult_37_years	chr22	36297299	36297338	36297299	-	High_confidence	5	5	18	0.668429	3.734522	chr22	36297101	36297382	LINE|L1|L1ME3E	-	chr22	36295511	36297323	MYH9|ENST00000459960.1	-	36295511,36296842	36295717,36297323	0.944444
thoracic_aorta_male_adult_37_years	chr8	123499042	123499091	123499090	-	RAMPAGE_only	4	4	11	0.408484	3.321928	chr8	123499079	123499174	SINE|MIR|MIRc	+	chr8	123497886	123532143	FBXO32|NM_148177.2	-	123497886,123504603,123506391,123513197,123514239,123531897	123503462,123504747,123506574,123513382,123514333,123532143	0.909091
thoracic_aorta_male_adult_37_years	chr22	23705471	23705503	23705471	-	RAMPAGE_only	3	3	11	0.408484	2.721928	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.909091
thoracic_aorta_male_adult_37_years	chr21	28776826	28776828	28776826	-	High_confidence	7	8	12	0.445619	3.095795	chr21	28776487	28777037	LTR|ERVL|MLT2A2	-	chr21	28776335	28777165	STRG.131508.1	-	28776335	28777165	0.833333
thoracic_aorta_male_adult_37_years	chr10	51202009	51202013	51202009	+	RAMPAGE_only	9	10	17	0.631294	3.452820	chr10	51202049	51202532	LTR|ERVL|LTR16A1	+	chr10	51187025	51213306	STRG.80528.2	+	51187025	51213306	0.941176
thoracic_aorta_male_adult_37_years	chr4	118769888	118769894	118769888	-	High_confidence	4	5	9	0.334214	2.750000	chr4	118769853	118769919	SINE|MIR|MIRb	+	chr4	118723023	118769840	SEC24D|ENST00000511481.5	-	118723023,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118769763	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118769840	0.555556
thoracic_aorta_male_adult_37_years	chr18	57761878	57761924	57761903	-	RAMPAGE_only	3	3	17	0.631294	3.702820	chr18	57761672	57761967	SINE|Alu|AluSc	+	chr18	57669422	57731754	ATP8B1|ENST00000648467.1	-	57669422,57671467,57674833,57684035,57685071,57688298,57691806,57694581,57695170,57695449,57697617,57697794,57701038,57701214,57706489,57731626	57669482,57671580,57675054,57684192,57685115,57688507,57691997,57694670,57695329,57695532,57697688,57697867,57701100,57701313,57706587,57731754	0.647059
thoracic_aorta_male_adult_37_years	chr17	28695343	28695381	28695343	+	High_confidence	6	6	23	0.854104	4.262692	chr17	28695199	28695350	SINE|MIR|MIR3	+	chr17	28695009	28696883	SUPT6H|ENST00000580471.1	+	28695009,28696843	28695547,28696883	0.521739
thoracic_aorta_male_adult_37_years	chr11	72135724	72135725	72135724	+	High_confidence	4	4	6	0.222810	2.584963	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	0.833333
thoracic_aorta_male_adult_37_years	chr11	65429087	65429576	65429548	+	RAMPAGE_only	50	56	1063	39.474441	6.103206	chr11	65429519	65429591	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
thoracic_aorta_male_adult_37_years	chr13	110179288	110179412	110179297	-	RAMPAGE_only	20	20	168	6.238670	6.211756	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110138872	110307131	STRG.101205.1	-	110138872,110150331,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110139584,110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307131	0.886905
thoracic_aorta_male_adult_37_years	chr6	130894344	130894423	130894344	-	RAMPAGE_only	5	5	29	1.076913	4.521641	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	0.827586
thoracic_aorta_male_adult_37_years	chr6	31587226	31587275	31587258	+	High_confidence	7	8	26	0.965508	4.209867	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	0.769231
thoracic_aorta_male_adult_37_years	chr14	50756775	50756798	50756797	-	RAMPAGE_only	4	4	15	0.557024	3.664498	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.933333
thoracic_aorta_male_adult_37_years	chr10	63610117	63610138	63610117	+	RAMPAGE_only	2	2	6	0.222810	2.584963	chr10	63609919	63610126	LINE|L1|L1ME2z	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	1.000000
thoracic_aorta_male_adult_37_years	chr16	11587465	11587475	11587465	-	High_confidence	9	9	21	0.779834	3.684184	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.857143
thoracic_aorta_male_adult_37_years	chr8	118075740	118075951	118075950	-	RAMPAGE_only	17	17	108	4.010574	5.150559	chr8	118075590	118075988	LTR|ERVL-MaLR|MSTB	-	chr8	117997316	118079630	STRG.69914.7	-	117997316,118032172	118032099,118079630	0.981481
thoracic_aorta_male_adult_37_years	chr9	111011690	111011692	111011690	-	RAMPAGE_only	2	4	7	0.259945	2.521641	chr9	111011255	111011741	LINE|CR1|L3	-	chr9	110873777	110999466	LPAR1|ENST00000374430.6	-	110873777,110941420,110972072,110973480,110999392	110875722,110942168,110972220,110973558,110999466	0.857143
thoracic_aorta_male_adult_37_years	chr8	118016927	118017032	118016927	-	RAMPAGE_only	9	9	44	1.633937	4.501278	chr8	118016857	118016998	LINE|L1|L1ME3A	+	chr8	117997316	118079630	STRG.69914.7	-	117997316,118032172	118032099,118079630	0.954545
thoracic_aorta_male_adult_37_years	chrX	71198195	71198208	71198207	-	High_confidence	3	5	10	0.371349	2.725481	chrX	71198068	71198187	SINE|MIR|MIR3	-	chrX	71183558	71198175	AL590764.1|ENST00000450860.1	-	71183558,71197908	71184017,71198175	0.700000
thoracic_aorta_male_adult_37_years	chr3	121788316	121788358	121788316	-	RAMPAGE_only	4	4	14	0.519889	3.378783	chr3	121788145	121788280	SINE|MIR|MIRc	-	chr3	121769993	121835034	IQCB1|ENST00000349820.10	-	121769993,121772556,121781742,121788283,121790072,121807343,121808915,121826050,121828469,121828860,121834390,121834965	121770574,121772713,121781874,121788432,121790215,121807443,121809009,121826180,121828632,121828972,121834479,121835034	1.000000
thoracic_aorta_male_adult_37_years	chr6	89655997	89656046	89656045	-	RAMPAGE_only	2	2	9	0.334214	2.750000	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642498	89819723	MDN1|ENST00000369393.7	-	89642498,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89706058,89707360,89708495,89710680,89712035,89712574,89713147,89714542,89715652,89716649,89718365,89718766,89719135,89722954,89723511,89725198,89727832,89728930,89730725,89732556,89738325,89740233,89743149,89743575,89745272,89745491,89747328,89749222,89749542,89750353,89751430,89753511,89754082,89756276,89758254,89758815,89761644,89762318,89771560,89772572,89774620,89776599,89780211,89781398,89785011,89787853,89789779,89790158,89793761,89794099,89794576,89803327,89819505	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89706192,89707476,89708628,89710794,89712256,89712786,89713296,89714751,89715769,89716809,89718627,89719030,89719225,89723143,89723619,89725396,89727955,89729139,89730923,89732775,89738455,89740378,89743280,89743714,89745411,89745626,89747470,89749369,89749751,89750532,89751582,89753622,89754230,89756390,89758351,89758960,89761748,89762530,89771621,89772721,89774733,89776695,89780293,89781592,89785126,89787957,89789911,89790401,89793954,89794207,89794801,89803554,89819723	0.888889
thoracic_aorta_male_adult_37_years	chr17	19281934	19281971	19281970	+	High_confidence	4	4	13	0.482754	3.188722	chr17	19281937	19282036	LINE|L2|L2a	-	chr17	19281954	19335194	EPN2|ENST00000395620.6	+	19281954,19309884,19312051,19313104,19328710,19329560,19331852,19333955	19283714,19309997,19312144,19313279,19328887,19329647,19332068,19335194	0.923077
thoracic_aorta_male_adult_37_years	chr7	6590435	6590452	6590435	+	High_confidence	3	3	7	0.259945	2.584963	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.571429
thoracic_aorta_male_adult_37_years	chr12	2608289	2608311	2608310	+	High_confidence	4	4	8	0.297080	2.500000	chr12	2608211	2608425	SINE|MIR|MIRc	-	chr12	2607879	2610699	CACNA1C|ENST00000496818.2	+	2607879,2608510,2610540	2608063,2608712,2610699	1.000000
thoracic_aorta_male_adult_37_years	chr16	4355592	4355593	4355592	-	High_confidence	31	32	33	1.225453	4.696132	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.757576
thoracic_aorta_male_adult_37_years	chr1	92847193	92847224	92847193	-	RAMPAGE_only	2	2	10	0.371349	2.721928	chr1	92847043	92847171	LINE|L1|L1ME4c	-	chr1	92842159	92877150	FAM69A|ENST00000613047.4	-	92842159,92847182,92850847,92876295,92876960	92844195,92847359,92850955,92876430,92877150	1.000000
thoracic_aorta_male_adult_37_years	chr3	40300091	40300092	40300091	-	RAMPAGE_only	8	8	8	0.297080	2.750000	chr3	40299910	40300324	LTR|ERVL-MaLR|MSTD	-	chr3	40225269	40225987	STRG.26481.1	-	40225269	40225987	0.750000
thoracic_aorta_male_adult_37_years	chr17	4843427	4843441	4843427	+	RAMPAGE_only	3	3	8	0.297080	2.521641	chr17	4843194	4843507	SINE|Alu|AluSx1	+	chr17	4833620	4885965	MINK1|ENST00000577021.1	+	4833620,4878316,4880983,4881113,4884362,4884911,4885482,4885910	4833640,4878382,4881040,4881257,4884473,4885002,4885613,4885965	0.750000
thoracic_aorta_male_adult_37_years	chr3	188225403	188225480	188225403	+	High_confidence	13	14	70	2.599446	5.111835	chr3	188225342	188225427	SINE|MIR|MIR3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.828571
thoracic_aorta_male_adult_37_years	chr19	46350849	46350851	46350849	+	RAMPAGE_only	3	5	8	0.297080	2.521641	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.875000
thoracic_aorta_male_adult_37_years	chrY	12686523	12686531	12686530	+	RAMPAGE_only	4	4	8	0.297080	2.521641	chrY	12685409	12686624	LTR|ERV1|MER4-int	+	chrY	12701230	12860839	USP9Y|ENST00000338981.7	+	12701230,12708633,12709387,12720588,12722107,12725112,12726574,12735611,12735997,12736410,12738156,12739524,12757191,12758505,12760483,12771067,12773582,12775470,12776648,12778018,12778605,12779525,12786202,12786521,12790406,12791498,12793031,12810178,12810671,12811634,12812829,12816123,12818419,12833687,12837910,12839863,12841009,12842239,12843063,12846332,12846932,12847238,12856339,12856632,12857565,12859278	12702055,12708693,12709543,12720737,12722187,12725225,12726793,12735727,12736249,12736549,12738309,12739629,12757398,12758642,12760617,12771155,12773925,12775566,12776860,12778259,12778755,12779646,12786333,12786800,12790532,12791624,12793201,12810287,12810818,12811781,12813052,12816344,12818610,12833861,12838052,12840614,12841133,12842465,12843193,12846518,12847153,12847327,12856496,12856845,12857661,12860839	0.750000
thoracic_aorta_male_adult_37_years	chr1	196715595	196715610	196715603	+	RAMPAGE_only	4	5	14	0.519889	3.807355	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.857143
thoracic_aorta_male_adult_37_years	chrX	11351675	11351676	11351675	-	RAMPAGE_only	44	47	62	2.302366	5.415061	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11346644	11353956	STRG.135667.1	-	11346644	11353956	0.532258
thoracic_aorta_male_adult_37_years	chr11	17282810	17282814	17282810	+	RAMPAGE_only	8	8	13	0.482754	3.251629	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.846154
thoracic_aorta_male_adult_37_years	chr9	113484732	113484733	113484732	+	RAMPAGE_only	14	17	17	0.631294	3.875000	chr9	113484629	113484751	SINE|MIR|MIR	+	chr9	113463731	113542089	RGS3|ENST00000317613.10	+	113463731,113479490,113483058,113484137,113485624,113495785,113497313,113498024,113505441,113506387,113507286,113508540,113514457,113517540,113522929,113529220,113536795,113541319	113463881,113479541,113483117,113484232,113485693,113495846,113497404,113498080,113505523,113506493,113507638,113508580,113514654,113517624,113523041,113529264,113536918,113542089	0.647059
thoracic_aorta_male_adult_37_years	chr8	30508190	30508212	30508211	+	RAMPAGE_only	10	11	23	0.854104	3.533771	chr8	30507969	30508353	LTR|ERVL-MaLR|MLT1B	+	chr8	30384526	30547519	STRG.66993.5	+	30384526,30474778,30477798,30479314,30504285,30511510,30535064	30385158,30474856,30477837,30479377,30511479,30534760,30547519	0.956522
thoracic_aorta_male_adult_37_years	chr14	100829421	100829477	100829455	+	High_confidence	3	4	17	0.631294	3.969816	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.882353
thoracic_aorta_male_adult_37_years	chr16	89672808	89672809	89672808	+	High_confidence	4	4	6	0.222810	2.584963	chr16	89672500	89673437	LTR|ERV1|MER4-int	+	chr16	89672939	89673462	STRG.115213.1	+	89672939	89673462	0.833333
thoracic_aorta_male_adult_37_years	chr19	54616967	54616968	54616967	+	High_confidence	12	15	17	0.631294	3.690117	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54616929	54637556	LILRB1|NM_006669.6	+	54616929,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637556	0.823529
thoracic_aorta_male_adult_37_years	chr7	66795515	66795534	66795529	+	RAMPAGE_only	5	5	14	0.519889	3.182006	chr7	66795573	66795610	DNA|hAT-Tip100|MamTip2	+	chr7	66797371	66808064	RABGEF1|ENST00000461017.1	+	66797371,66799322,66805139,66807837	66797506,66799414,66805396,66808064	0.928571
thoracic_aorta_male_adult_37_years	chr11	77175226	77175303	77175226	+	High_confidence	23	23	120	4.456193	5.901863	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175251	77191570	STRG.87389.1	+	77175251,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77191570	0.991667
thoracic_aorta_male_adult_37_years	chr2	217814431	217814432	217814431	-	RAMPAGE_only	17	17	21	0.779834	4.121928	chr2	217814315	217814528	DNA|hAT-Charlie|MER58A	-	chr2	217813708	217885810	STRG.22865.13	-	217813708,217817689,217821739,217831454,217835090,217836014,217847509,217880897,217882345,217885034,217885743	217814998,217818759,217821938,217831547,217835166,217836211,217849087,217881014,217882411,217885164,217885810	0.904762
thoracic_aorta_male_adult_37_years	chr2	159428326	159428375	159428356	-	RAMPAGE_only	20	24	77	2.859390	5.681881	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.805195
thoracic_aorta_male_adult_37_years	chr5	150118764	150118789	150118788	-	RAMPAGE_only	6	6	32	1.188318	4.452820	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113836	150125520	STRG.48086.4	-	150113836,150115150,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444	150115099,150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125520	1.000000
thoracic_aorta_male_adult_37_years	chr1	196715644	196715767	196715644	+	RAMPAGE_only	9	9	60	2.228096	5.163763	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.883333
thoracic_aorta_male_adult_37_years	chr3	195686735	195686767	195686735	+	High_confidence	2	2	12	0.445619	2.732159	chr3	195686644	195686804	DNA|hAT-Charlie|MER1B	+	chr3	195686489	195687106	STRG.33417.40	+	195686489	195687106	0.583333
thoracic_aorta_male_adult_37_years	chrX	5726323	5726325	5726324	-	High_confidence	109	127	159	5.904455	5.260709	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5719438	5726305	STRG.135493.1	-	5719438,5725929	5719872,5726305	0.974843
thoracic_aorta_male_adult_37_years	chr2	217814036	217814159	217814158	-	High_confidence	16	22	61	2.265231	5.043494	chr2	217814000	217814314	SINE|Alu|AluJr	-	chr2	217803797	217814016	TNS1|ENST00000490566.1	-	217803797,217808074,217808602,217809822,217810247,217812367,217813214,217813684	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217814016	0.950820
thoracic_aorta_male_adult_37_years	chr14	34536099	34536110	34536109	-	RAMPAGE_only	4	4	10	0.371349	2.947703	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34515928	34539710	EAPP|ENST00000250454.7	-	34515928,34524696,34529357,34533443,34536093,34539554	34516586,34524807,34529475,34533539,34536275,34539710	0.700000
thoracic_aorta_male_adult_37_years	chr11	20077444	20077445	20077444	+	RAMPAGE_only	11	12	14	0.519889	3.392747	chr11	20077024	20077445	LINE|L2|L2c	-	chr11	20022837	20080184	NAV2|ENST00000525322.5	+	20022837,20035958,20043980,20044967,20048727,20054079,20055768,20062306,20068185,20068323,20077551,20077992,20080063	20023132,20036097,20044272,20045670,20049195,20054240,20055957,20062359,20068209,20068398,20077635,20078104,20080184	0.785714
thoracic_aorta_male_adult_37_years	chr11	65432953	65433095	65433039	+	RAMPAGE_only	29	29	326	12.105990	6.356322	chr11	65432693	65433229	LINE|L1|L1PB3	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
thoracic_aorta_male_adult_37_years	chr17	8310240	8310257	8310256	+	High_confidence	7	8	24	0.891239	4.095795	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.791667
thoracic_aorta_male_adult_37_years	chr9	13386132	13386133	13386132	+	RAMPAGE_only	78	80	98	3.639224	5.709311	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.693878
thoracic_aorta_male_adult_37_years	chr12	53173817	53173839	53173819	-	High_confidence	5	7	19	0.705564	3.461320	chr12	53173811	53174022	LINE|L1|L1MB7	-	chr12	53157688	53173775	CSAD|ENST00000379843.7	-	53157688,53159621,53159886,53160119,53160762,53161272,53170071,53170422,53171272,53171881,53172345,53172521,53173344,53173727	53158423,53159712,53159938,53160319,53160844,53161389,53170126,53170502,53171441,53171988,53172436,53172648,53173476,53173775	0.789474
thoracic_aorta_male_adult_37_years	chr9	92720691	92720725	92720724	-	RAMPAGE_only	4	4	15	0.557024	3.521641	chr9	92720689	92720791	DNA|TcMar-Tigger|Tigger19b	-	chr9	92711362	92764801	BICD2|NM_001003800.1	-	92711362,92717796,92718538,92720299,92722655,92729023,92764504	92715463,92717948,92719582,92720755,92722808,92729236,92764801	0.933333
thoracic_aorta_male_adult_37_years	chr10	95489461	95489577	95489543	-	RAMPAGE_only	21	23	95	3.527819	5.818444	chr10	95489409	95489520	LINE|L2|L2a	-	chr10	95399016	95561355	STRG.82468.14	-	95399016,95406117,95410632,95414493,95421960,95422189,95432447,95437489,95441125,95482433,95561319	95399189,95406147,95410777,95416185,95422073,95422216,95432576,95437555,95441180,95491120,95561355	1.000000
thoracic_aorta_male_adult_37_years	chr6	17856034	17856041	17856034	-	RAMPAGE_only	4	4	9	0.334214	3.169925	chr6	17855745	17856010	SINE|Alu|AluJo	-	chr6	17759182	17987463	KIF13A|ENST00000378814.9	-	17759182,17764154,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571,17796668,17799265,17799951,17804360,17805474,17808767,17817019,17825767,17826037,17828239,17831100,17833960,17836877,17837471,17849376,17850322,17851954,17855436,17856029,17873376,17898167,17987053,17987408	17760877,17764946,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794704,17796820,17799439,17800113,17804510,17805615,17808930,17817233,17825934,17826124,17828370,17831235,17834071,17837090,17837583,17849489,17850457,17852042,17855617,17856122,17873437,17898180,17987144,17987463	0.666667
thoracic_aorta_male_adult_37_years	chr19	11547613	11547614	11547613	+	High_confidence	4	4	7	0.259945	2.521641	chr19	11547428	11547728	SINE|Alu|AluY	+	chr19	11547839	11550321	CNN1|ENST00000588935.1	+	11547839,11549322,11549549,11550032	11547907,11549469,11549745,11550321	0.571429
thoracic_aorta_male_adult_37_years	chrX	53399759	53399792	53399791	-	RAMPAGE_only	3	3	8	0.297080	2.750000	chrX	53399750	53399790	LINE|L1|L1ME4a	-	chrX	53374148	53422728	SMC1A|ENST00000322213.8	-	53374148,53380619,53381017,53382231,53382505,53383096,53394777,53396226,53396471,53399588,53403565,53403776,53405011,53405244,53405492,53405770,53409061,53409420,53411760,53411994,53412899,53413231,53414757,53414980,53422491	53380186,53380730,53381087,53382383,53382660,53383253,53394888,53396380,53396617,53399730,53403672,53403893,53405149,53405391,53405672,53405956,53409269,53409503,53411901,53412253,53413138,53413435,53414870,53415169,53422728	0.875000
thoracic_aorta_male_adult_37_years	chr12	7111535	7111559	7111558	+	RAMPAGE_only	4	5	12	0.445619	3.251629	chr12	7111556	7111739	LINE|L1|L1MEf	+	chr12	7108307	7121851	C1RL-AS1|NR_026947.1	+	7108307,7108672,7110063,7110297,7111024,7112006,7115129,7115385,7118898,7119499,7120505,7121711	7108481,7108947,7110147,7110572,7111606,7112064,7115219,7118677,7119026,7119553,7120625,7121851	0.916667
thoracic_aorta_male_adult_37_years	chr14	76780431	76780445	76780431	+	RAMPAGE_only	4	4	9	0.334214	2.500000	chr14	76780307	76780463	LINE|CR1|L3	+	chr14	76762188	76783015	VASH1|ENST00000167106.8	+	76762188,76769962,76771189,76773136,76775891,76777958,76778945	76763130,76770051,76771246,76773211,76776273,76778071,76783015	0.888889
thoracic_aorta_male_adult_37_years	chr9	129488726	129488857	129488856	+	High_confidence	111	114	581	21.575400	6.102235	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.950086
thoracic_aorta_male_adult_37_years	chr5	31530850	31530897	31530877	-	RAMPAGE_only	3	3	13	0.482754	3.418296	chr5	31530667	31530954	LINE|L2|L2c	+	chr5	31400496	31532061	DROSHA|ENST00000511367.6	-	31400496,31405676,31406852,31409055,31409249,31410745,31421271,31422786,31424426,31429474,31431575,31435764,31437238,31448546,31449280,31451532,31464235,31466181,31467938,31472062,31483553,31484880,31486490,31493206,31495285,31504554,31508620,31511034,31514987,31515453,31521122,31526078,31529039,31530797,31531989	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31422944,31424471,31429545,31431678,31435864,31437298,31448607,31449419,31451640,31464343,31466281,31468063,31472232,31483628,31484962,31486562,31493293,31495372,31504635,31508775,31511176,31515219,31515564,31521215,31526912,31529105,31530924,31532061	0.692308
thoracic_aorta_male_adult_37_years	chr5	147405866	147405867	147405866	-	High_confidence	5	5	7	0.259945	2.584963	chr5	147405844	147405951	SINE|MIR|MIRb	+	chr5	147395676	147405640	DPYSL3|ENST00000523458.1	-	147395676,147397665,147399081,147401539,147405609	147395721,147397845,147399252,147401696,147405640	0.571429
thoracic_aorta_male_adult_37_years	chr9	121313981	121314021	121314020	+	RAMPAGE_only	435	441	1304	48.423962	5.745355	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.996933
thoracic_aorta_male_adult_37_years	chr14	64025418	64025419	64025418	+	RAMPAGE_only	8	8	8	0.297080	2.500000	chr14	64025468	64025746	LINE|CR1|L3b	+	chr14	64003023	64049279	SYNE2|ENST00000557005.1	+	64003023,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024911,64025129,64026578,64027483,64029894,64031015,64047999	64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64049279	1.000000
thoracic_aorta_male_adult_37_years	chr10	43966637	43966638	43966637	+	RAMPAGE_only	12	12	17	0.631294	3.750000	chr10	43966565	43967049	LTR|ERVL|LTR33A_	-	chr10	43980463	43981185	STRG.79906.1	+	43980463	43981185	0.588235
thoracic_aorta_male_adult_37_years	chr14	68902775	68902776	68902775	-	RAMPAGE_only	12	12	15	0.557024	3.323231	chr14	68902604	68903277	LINE|L1|L1MC5a	+	chr14	68893702	68921038	ACTN1|ENST00000554508.5	-	68893702,68900861,68902476,68904654,68909317,68909954,68912155,68921005	68893747,68900946,68902562,68904736,68909396,68910042,68912242,68921038	0.600000
thoracic_aorta_male_adult_37_years	chr3	44439853	44439896	44439853	-	RAMPAGE_only	10	11	63	2.339501	5.335813	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431783	44477653	STRG.26879.2	-	44431783,44449512,44450446,44451313,44455120,44458243,44477590	44448739,44449623,44450962,44451482,44455696,44458364,44477653	0.555556
thoracic_aorta_male_adult_37_years	chr15	28745694	28745699	28745698	+	RAMPAGE_only	4	4	9	0.334214	3.000000	chr15	28745517	28745845	LINE|L1|L1ME4a	+	chr15	28741100	28759204	WHAMMP2|ENST00000512149.3	+	28741100,28744748,28745596,28745979,28747709,28751487,28754468,28754808	28741266,28744899,28745755,28746149,28747875,28751674,28754555,28759204	0.777778
thoracic_aorta_male_adult_37_years	chr19	45823857	45823858	45823857	-	High_confidence	4	4	6	0.222810	2.584963	chr19	45823777	45823871	LINE|RTE-BovB|MamRTE1	-	chr19	45816482	45824012	SYMPK|ENST00000598329.2	-	45816482,45816797,45817958,45821383,45822755,45823371,45823766	45816577,45816974,45818146,45821485,45822846,45823472,45824012	0.833333
thoracic_aorta_male_adult_37_years	chr11	10687534	10687587	10687547	-	RAMPAGE_only	3	3	19	0.705564	4.169925	chr11	10687272	10687634	LTR|ERVL|LTR79	+	chr11	10632027	10693514	MRVI1|ENST00000529547.1	-	10632027,10633967,10652024,10658383,10693461	10632061,10634071,10652182,10658579,10693514	0.526316
thoracic_aorta_male_adult_37_years	chr7	88283838	88283859	88283855	-	RAMPAGE_only	15	22	48	1.782477	3.730858	chr7	88283844	88283877	LINE|RTE-BovB|MamRTE1	-	chr7	88270891	88306880	STRG.61432.1	-	88270891,88280914,88282640,88283813,88290915,88306791	88279628,88281079,88283168,88284271,88291014,88306880	0.958333
thoracic_aorta_male_adult_37_years	chr7	134947287	134947341	134947299	+	RAMPAGE_only	10	10	58	2.153827	5.303820	chr7	134947289	134947319	SINE|MIR|MIR	-	chr7	134941181	134948102	CALD1|ENST00000472096.1	+	134941181,134947507	134941237,134948102	0.810345
thoracic_aorta_male_adult_37_years	chr10	51210675	51210699	51210698	+	RAMPAGE_only	3	3	13	0.482754	3.700440	chr10	51210054	51213477	LINE|L1|L1PA4	+	chr10	51187025	51213306	STRG.80528.2	+	51187025	51213306	1.000000
thoracic_aorta_male_adult_37_years	chr1	27558484	27558504	27558503	-	High_confidence	13	13	24	0.891239	4.251629	chr1	27558497	27558557	SINE|MIR|MIR3	+	chr1	27551667	27558361	AHDC1|ENST00000487743.3	-	27551667,27552038,27552891,27553073,27558304	27551850,27552189,27552929,27553185,27558361	0.583333
thoracic_aorta_male_adult_37_years	chr1	240285318	240285319	240285318	+	RAMPAGE_only	4	6	6	0.222810	2.584963	chr1	240285122	240285870	LINE|L2|L2c	-	chr1	240091884	240475189	FMN2|NM_020066.4	+	240091884,240123178,240177920,240188206,240206798,240211090,240257944,240294821,240329075,240329338,240330602,240333886,240334108,240355815,240392510,240438060,240472371,240474127	240093724,240123345,240178068,240188262,240208732,240211235,240258032,240294883,240329167,240329468,240330749,240333946,240334229,240355908,240392562,240438210,240472453,240475189	0.500000
thoracic_aorta_male_adult_37_years	chr13	45378644	45378670	45378644	+	High_confidence	2	2	6	0.222810	2.584963	chr13	45378076	45378674	LTR|ERV1|HERVE-int	-	chr13	45378559	45391722	TPT1-AS1|ENST00000522673.5	+	45378559,45379194,45379925,45383090,45383759,45389734,45390713,45391031	45378671,45379335,45380001,45383235,45383838,45389820,45390902,45391722	1.000000
thoracic_aorta_male_adult_37_years	chr3	129559620	129559751	129559620	-	High_confidence	6	6	32	1.188318	4.625000	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	0.843750
thoracic_aorta_male_adult_37_years	chr19	58312058	58312080	58312069	+	RAMPAGE_only	6	6	14	0.519889	3.392747	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.928571
thoracic_aorta_male_adult_37_years	chr4	15338347	15338450	15338347	-	RAMPAGE_only	4	4	56	2.079557	4.680223	chr4	15338320	15338374	LTR|ERVL-MaLR|MLT1J1	-	chr4	15295416	15349990	STRG.34808.6	-	15295416	15349990	1.000000
thoracic_aorta_male_adult_37_years	chr21	37083976	37084016	37083992	+	High_confidence	2	3	10	0.371349	3.321928	chr21	37083879	37084118	DNA|hAT-Charlie|MER113B	+	chr21	37083625	37093402	TTC3|ENST00000484047.5	+	37083625,37087246,37087832,37088798,37090232,37091292,37093308	37084331,37087401,37088346,37088886,37090286,37091626,37093402	1.000000
thoracic_aorta_male_adult_37_years	chr12	57532056	57532081	57532080	-	RAMPAGE_only	3	3	11	0.408484	3.121928	chr12	57531960	57532134	LINE|RTE-BovB|MamRTE1	+	chr12	57530616	57547120	DCTN2|ENST00000549394.5	-	57530616,57532014,57532212,57532571,57532732,57532983,57533237,57533952,57534291,57535055,57535483,57535748,57538252,57541363,57546027,57547027	57530775,57532106,57532315,57532643,57532810,57533022,57533303,57534097,57534452,57535154,57535545,57535845,57538347,57541372,57546096,57547120	0.636364
thoracic_aorta_male_adult_37_years	chr8	18063197	18063216	18063197	-	High_confidence	4	4	11	0.408484	3.095795	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
thoracic_aorta_male_adult_37_years	chr5	142621153	142621154	142621153	-	High_confidence	6	6	6	0.222810	2.584963	chr5	142620934	142621256	LINE|L2|L2c	+	chr5	142592177	142621342	FGF1|ENST00000359370.10	-	142592177,142600701,142613958,142621296	142595484,142600805,142614161,142621342	1.000000
thoracic_aorta_male_adult_37_years	chr10	51265851	51265952	51265851	+	RAMPAGE_only	37	39	127	4.716137	5.595168	chr10	51265838	51265934	LINE|L2|L2	-	chr10	51187025	51284854	STRG.80528.1	+	51187025,51197866	51197793,51284854	0.976378
thoracic_aorta_male_adult_37_years	chr3	189121501	189121507	189121501	+	RAMPAGE_only	9	9	17	0.631294	2.660130	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.941176
thoracic_aorta_male_adult_37_years	chr2	102159009	102159025	102159009	+	RAMPAGE_only	1	2	6	0.222810	2.584963	chr2	102158241	102159285	LINE|L2|L2a	-	chr2	102153962	102176759	STRG.17704.9	+	102153962,102157718,102165114,102166112,102168597,102171800,102172686,102174586,102175477,102176352	102154017,102165008,102165304,102166281,102168663,102171918,102172838,102174730,102175645,102176759	1.000000
thoracic_aorta_male_adult_37_years	chr22	42644615	42644626	42644615	-	High_confidence	3	3	10	0.371349	2.947703	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	0.900000
thoracic_aorta_male_adult_37_years	chr3	124398528	124398543	124398542	+	RAMPAGE_only	3	4	8	0.297080	2.750000	chr3	124398529	124398585	LINE|L2|L2c	+	chr3	124384824	124488865	KALRN|ENST00000393501.5	+	124384824,124395134,124398696,124413469,124422811,124430655,124434306,124438887,124441944,124446160,124446762,124455176,124456609,124461889,124462523,124474662,124477244,124482807,124488203	124385036,124395304,124398871,124413665,124422978,124430775,124434525,124439037,124442059,124446276,124446885,124455359,124456728,124461956,124462633,124474732,124477334,124482900,124488865	0.500000
thoracic_aorta_male_adult_37_years	chr19	52616742	52616792	52616742	-	RAMPAGE_only	2	4	15	0.557024	2.923231	chr19	52616561	52616863	SINE|Alu|AluSp	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	0.933333
thoracic_aorta_male_adult_37_years	chrX	151971266	151971310	151971309	-	High_confidence	4	4	10	0.371349	3.121928	chrX	151971131	151971345	LINE|L1|L1ME3A	+	chrX	151969398	151970552	GABRE|ENST00000465405.1	-	151969398,151970184	151969736,151970552	0.600000
thoracic_aorta_male_adult_37_years	chrX	53546444	53546447	53546444	-	RAMPAGE_only	6	6	11	0.408484	3.277613	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.818182
thoracic_aorta_male_adult_37_years	chr21	45134707	45134741	45134716	+	High_confidence	2	2	10	0.371349	3.169925	chr21	45134610	45134741	LINE|L1|L1M	+	chr21	45134795	45226559	ADARB1|ENST00000629643.2	+	45134795,45171609,45175729,45180329,45182584,45183361,45184922,45204554,45220835,45222017,45225546	45134832,45171684,45176664,45180444,45182753,45183510,45185091,45204736,45221014,45223577,45226559	0.500000
thoracic_aorta_male_adult_37_years	chr22	20753351	20753352	20753351	-	RAMPAGE_only	4	4	6	0.222810	2.584963	chr22	20753247	20753679	LINE|L1|L1MD3	-	chr22	20707690	20858812	PI4KA|NM_058004.3	-	20707690,20709295,20709907,20710698,20711340,20712485,20712692,20713280,20714457,20714627,20717707,20718692,20721297,20726487,20727229,20727773,20729312,20729631,20729891,20732970,20733735,20734042,20734394,20742227,20742607,20744627,20747582,20749904,20751292,20751673,20752902,20753109,20761303,20764816,20765099,20765584,20793192,20796145,20798583,20799092,20799670,20801972,20803190,20804299,20804973,20807361,20810966,20813357,20818482,20819640,20820538,20824325,20834561,20838614,20858569	20708098,20709379,20709997,20710858,20711461,20712611,20712797,20713390,20714528,20714700,20717778,20718822,20721418,20726541,20727397,20727864,20729506,20729711,20730011,20733098,20733843,20734194,20734553,20742355,20742764,20744720,20747702,20749994,20751376,20751755,20753027,20753180,20761386,20764950,20765236,20765693,20793243,20796314,20798687,20799276,20799766,20802105,20803320,20804400,20805165,20807458,20811032,20813506,20818549,20819900,20820611,20824414,20834655,20838731,20858812	1.000000
thoracic_aorta_male_adult_37_years	chr9	128498557	128498558	128498557	+	RAMPAGE_only	6	6	7	0.259945	2.584963	chr9	128498530	128498750	SINE|MIR|MIR	+	chr9	128497501	128500391	ODF2|ENST00000488909.1	+	128497501,128499000,128500066	128498575,128499126,128500391	0.857143
thoracic_aorta_male_adult_37_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	15	15	15	0.557024	3.773557	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.533333
thoracic_aorta_male_adult_37_years	chr2	187513632	187513653	187513652	-	High_confidence	2	2	6	0.222810	2.584963	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	0.500000
thoracic_aorta_male_adult_37_years	chr7	6590246	6590286	6590246	+	High_confidence	8	8	40	1.485398	4.348753	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.500000
thoracic_aorta_male_adult_37_years	chr17	56904425	56904463	56904425	-	High_confidence	4	4	12	0.445619	3.095795	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.500000
thoracic_aorta_male_adult_37_years	chr2	63827822	63827823	63827822	-	High_confidence	12	12	13	0.482754	3.251629	chr2	63827753	63828092	LTR|ERVL?|LTR55	-	chr2	63484603	63827843	WDPCP|ENST00000490935.5	-	63484603,63484916,63487446,63492855,63650658,63711496,63813621,63827621	63484663,63484987,63487494,63492940,63650838,63711591,63813707,63827843	0.615385
thoracic_aorta_male_adult_37_years	chr9	122897280	122897299	122897280	-	High_confidence	2	2	8	0.297080	2.807355	chr9	122897211	122897256	DNA|TcMar-Mariner|MADE1	-	chr9	122849452	122897534	STRG.76409.4	-	122849452,122851080,122851322,122853951,122854184,122854530,122855183,122855731,122857922,122858668,122859916,122865348,122877470,122879754,122879992,122880593,122883203,122890311,122892908,122897278	122849822,122851229,122851436,122854086,122854266,122854615,122855397,122855878,122858093,122858917,122860131,122865657,122877583,122879873,122880125,122880794,122883379,122890545,122893026,122897534	0.875000
thoracic_aorta_male_adult_37_years	chr11	58578102	58578168	58578102	-	High_confidence	21	24	95	3.527819	5.636137	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.526316
thoracic_aorta_male_adult_37_years	chr16	74485805	74485828	74485827	-	RAMPAGE_only	3	3	8	0.297080	3.000000	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	0.625000
thoracic_aorta_male_adult_37_years	chr17	4736361	4736404	4736361	-	High_confidence	15	19	65	2.413771	3.902311	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.892308
thoracic_aorta_male_adult_37_years	chr19	10400658	10400675	10400658	-	RAMPAGE_only	4	4	11	0.408484	3.095795	chr19	10400416	10400718	SINE|Alu|AluJb	+	chr19	10395022	10403511	CDC37|ENST00000588869.1	-	10395022,10395227,10395927,10400574,10403377	10395143,10395543,10396203,10400693,10403511	1.000000
thoracic_aorta_male_adult_37_years	chr11	64226142	64226180	64226158	-	High_confidence	49	51	271	10.063569	6.992666	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.974170
thoracic_aorta_male_adult_37_years	chr2	201115990	201116019	201115997	+	High_confidence	3	3	13	0.482754	3.180833	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.923077
thyroid_gland_female_adult_51_years	chr2	119730526	119730564	119730563	-	High_confidence	122	123	246	15.797135	4.495142	chr2	119730532	119730650	DNA|hAT-Charlie|MER5A1	-	chr2	119723206	119730794	STRG.17596.2	-	119723206,119730285	119723527,119730794	0.894309
thyroid_gland_female_adult_51_years	chr2	187529459	187529476	187529459	-	RAMPAGE_only	4	6	11	0.706376	2.913977	chr2	187529293	187529670	LTR|ERVL-MaLR|MLT1B	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.909091
thyroid_gland_female_adult_51_years	chr12	52307937	52307978	52307937	+	RAMPAGE_only	3	3	11	0.706376	2.921928	chr12	52307875	52308069	SINE|MIR|MIRb	-	chr12	52306125	52309201	STRG.94638.1	+	52306125,52308232,52308403	52306280,52308264,52309201	0.909091
thyroid_gland_female_adult_51_years	chr11	123061200	123061328	123061256	-	High_confidence	29	35	222	14.255951	5.651486	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.968468
thyroid_gland_female_adult_51_years	chr8	132885974	132886033	132885981	+	RAMPAGE_only	5	5	29	1.862264	4.021268	chr8	132885676	132886076	LTR|ERVL-MaLR|MLT1C	-	chr8	132866960	133134897	TG|ENST00000220616.8	+	132866960,132868114,132869728,132871347,132873061,132881862,132882468,132882813,132886447,132887983,132893689,132897648,132898168,132898797,132900236,132901352,132906687,132908185,132911376,132913046,132919375,132923337,132929075,132933560,132935755,132941350,132948775,132961007,132962993,132966559,132967793,132969457,132971793,132972597,132983349,133011900,133013599,133017777,133019601,133021990,133029820,133095043,133096205,133113421,133116608,133131811,133133469,133134675	132867067,132868223,132869826,132871551,132873221,132881969,132882612,132882999,132887548,132888568,132893929,132897786,132898246,132898910,132900339,132901553,132906900,132908340,132911533,132913265,132919525,132923508,132929192,132933676,132935864,132941542,132948943,132961073,132963074,132966697,132967970,132969569,132971873,132972741,132983412,133012035,133013764,133017997,133019695,133022150,133030023,133095208,133096373,133113603,133116716,133131946,133133660,133134897	0.862069
thyroid_gland_female_adult_51_years	chr2	43277300	43277318	43277317	-	High_confidence	9	10	22	1.412752	3.621928	chr2	43277189	43277438	LINE|L2|L2	+	chr2	43231206	43277301	THADA|ENST00000467668.1	-	43231206,43232712,43277226	43231343,43232882,43277301	0.545455
thyroid_gland_female_adult_51_years	chr19	40608581	40608592	40608591	+	RAMPAGE_only	7	7	12	0.770592	3.095795	chr19	40608638	40608924	SINE|Alu|AluSq2	+	chr19	40610212	40611922	LTBP4|ENST00000598256.1	+	40610212,40611151,40611858	40610657,40611394,40611922	0.500000
thyroid_gland_female_adult_51_years	chr2	226466290	226466291	226466290	-	RAMPAGE_only	13	16	18	1.155888	3.683542	chr2	226466172	226467862	LINE|L2|L2a	+	chr2	226332429	226508810	STRG.23032.2	-	226332429,226454655,226508767	226333581,226454814,226508810	0.555556
thyroid_gland_female_adult_51_years	chr12	50930272	50930771	50930770	+	RAMPAGE_only	41	47	489	31.401622	6.530285	chr12	50930582	50930881	SINE|Alu|AluSp	-	chr12	50924750	50932517	METTL7A|ENST00000332160.4	+	50924750,50929913	50925536,50932517	1.000000
thyroid_gland_female_adult_51_years	chr2	29130412	29130425	29130424	-	High_confidence	7	7	14	0.899024	3.467720	chr2	29130249	29130396	LTR|ERV1|LTR109A2	-	chr2	29124100	29130443	STRG.13737.1	-	29124100	29130443	1.000000
thyroid_gland_female_adult_51_years	chr6	84139533	84139566	84139533	+	RAMPAGE_only	9	9	24	1.541184	4.084963	chr6	84139529	84140525	LTR|ERV1|MER34-int	+	chr6	84146022	84146521	STRG.55080.1	+	84146022	84146521	0.750000
thyroid_gland_female_adult_51_years	chr21	45563091	45563128	45563114	-	High_confidence	2	3	9	0.577944	2.500000	chr21	45562422	45564060	LINE|L1|L1MC3	+	chr21	45561900	45563117	STRG.129458.5	-	45561900	45563117	0.666667
thyroid_gland_female_adult_51_years	chr6	106970552	106971830	106970672	-	RAMPAGE_only	102	119	2055	131.963872	7.664390	chr6	106970529	106970829	SINE|Alu|AluSx1	+	chr6	106969830	106974039	CD24|NM_001291739.1	-	106969830,106973669	106971834,106974039	0.999513
thyroid_gland_female_adult_51_years	chr16	8842153	8842154	8842153	+	High_confidence	7	7	8	0.513728	2.521641	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.875000
thyroid_gland_female_adult_51_years	chr2	56192044	56192045	56192044	+	High_confidence	7	7	11	0.706376	3.277613	chr2	56192020	56192167	SINE|MIR|MIRb	+	chr2	56192021	56348880	STRG.14913.3	+	56192021,56192476,56342878	56192075,56193440,56348880	1.000000
thyroid_gland_female_adult_51_years	chr15	55513689	55513716	55513715	-	RAMPAGE_only	17	18	64	4.109824	5.413633	chr15	55513405	55516274	LTR|ERV1|HERVE_a-int	-	chr15	55359017	55515365	STRG.107980.8	-	55359017,55365187,55371792,55376948,55378299,55385599,55389364,55432496,55434904,55439471,55450221,55491122,55497711,55498206	55360944,55365309,55372044,55377150,55378376,55385714,55389433,55432602,55435058,55439581,55450367,55491256,55497810,55515365	0.921875
thyroid_gland_female_adult_51_years	chr2	168856513	168856526	168856523	+	High_confidence	7	7	24	1.541184	3.605389	chr2	168856294	168856585	SINE|Alu|AluSg	+	chr2	168855685	168865054	NOSTRIN|ENST00000472260.1	+	168855685,168859511,168860794,168861959,168864833	168856778,168859637,168860909,168862049,168865054	1.000000
thyroid_gland_female_adult_51_years	chr10	34973954	34973991	34973977	+	High_confidence	22	22	131	8.412295	5.548894	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34973983	34975576	STRG.81522.4	+	34973983	34975576	0.977099
thyroid_gland_female_adult_51_years	chr4	128428066	128428074	128428073	+	High_confidence	4	4	9	0.577944	2.500000	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428069	128519394	AC108062.1|ENST00000511497.5	+	128428069,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519394	0.888889
thyroid_gland_female_adult_51_years	chr2	113237314	113237339	113237338	-	High_confidence	2	2	8	0.513728	2.521641	chr2	113237242	113237460	SINE|MIR|MIRc	-	chr2	113225596	113237508	PAX8|ENST00000485840.1	-	113225596,113235393,113236600	113227256,113235582,113237508	0.875000
thyroid_gland_female_adult_51_years	chr18	36807863	36807870	36807863	-	High_confidence	4	4	9	0.577944	2.641604	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.666667
thyroid_gland_female_adult_51_years	chr9	73080369	73080370	73080369	-	High_confidence	78	78	78	5.008848	5.288294	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.923077
thyroid_gland_female_adult_51_years	chr7	47401170	47401219	47401196	-	RAMPAGE_only	15	15	62	3.981392	4.777317	chr7	47401190	47401377	LINE|CR1|L3b	-	chr7	47369496	47403425	TNS3|ENST00000469470.1	-	47369496,47396799,47400392,47400784,47403267	47369621,47396904,47400458,47400914,47403425	0.693548
thyroid_gland_female_adult_51_years	chr19	45450739	45450769	45450739	-	High_confidence	2	3	10	0.642160	2.921928	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.700000
thyroid_gland_female_adult_51_years	chr3	187024609	187024629	187024626	+	High_confidence	4	4	14	0.899024	3.546594	chr3	187024583	187024927	LINE|L1|L1MC5a	+	chr3	187024687	187042927	ST6GAL1|ENST00000416235.5	+	187024687,187038741,187042653	187024858,187038873,187042927	0.571429
thyroid_gland_female_adult_51_years	chr1	1655378	1655466	1655410	-	RAMPAGE_only	7	9	34	2.183344	4.562500	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635586	1656490	STRG.294.6	-	1635586,1635936,1636332,1636681,1636896,1637080,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368	1635856,1636126,1636481,1636798,1637004,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1656490	0.941176
thyroid_gland_female_adult_51_years	chr5	112219334	112219335	112219334	+	RAMPAGE_only	25	25	25	1.605400	3.763856	chr5	112219140	112219503	LTR|ERVL-MaLR|THE1D	+	chr5	112228282	112257309	AC104126.1|ENST00000504004.1	+	112228282,112249597,112250614,112256862	112228352,112249632,112250773,112257309	0.960000
thyroid_gland_female_adult_51_years	chr3	125323701	125323771	125323701	-	RAMPAGE_only	5	6	47	3.018152	4.926721	chr3	125323678	125323983	SINE|Alu|AluY	+	chr3	125313414	125357280	ZNF148|ENST00000495019.5	-	125313414,125323308,125331157,125356976	125313656,125323444,125331238,125357280	0.617021
thyroid_gland_female_adult_51_years	chr8	32927967	32927984	32927976	+	High_confidence	27	30	69	4.430904	5.315073	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927990	33047167	STRG.69486.1	+	32927990,32996200,33041634,33044366	32928093,32996316,33041771,33047167	0.855072
thyroid_gland_female_adult_51_years	chr6	158665257	158665275	158665257	+	RAMPAGE_only	9	10	25	1.605400	4.293661	chr6	158665118	158665308	SINE|MIR|MIRb	-	chr6	158663478	158768287	STRG.59106.2	+	158663478,158665394,158682924,158707229,158708321,158713799,158718086,158725502,158745479,158751927,158757210,158760639,158762075,158763303,158764494	158663625,158665613,158682989,158707281,158708391,158713878,158718211,158725637,158745658,158752030,158757381,158760745,158762178,158763509,158768287	0.920000
thyroid_gland_female_adult_51_years	chr18	41632158	41632189	41632158	-	High_confidence	4	5	10	0.642160	2.921928	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41521197	41632075	KC6|ENST00000600183.5	-	41521197,41525354,41631999	41521496,41525526,41632075	0.700000
thyroid_gland_female_adult_51_years	chr16	15006444	15006474	15006444	+	RAMPAGE_only	2	2	10	0.642160	2.503258	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.600000
thyroid_gland_female_adult_51_years	chr15	80059918	80059933	80059918	+	High_confidence	38	43	105	6.742680	5.044989	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.904762
thyroid_gland_female_adult_51_years	chr15	24920433	24920471	24920454	+	High_confidence	21	42	81	5.201496	5.792371	chr15	24920380	24920543	DNA|hAT-Charlie|MER5A	-	chr15	24919550	24977850	STRG.105985.9	+	24919550,24962113,24967931,24974310,24975357,24976304,24976876,24977777	24920124,24962209,24968082,24974456,24975509,24976416,24977029,24977850	0.716049
thyroid_gland_female_adult_51_years	chr11	72758550	72758553	72758550	-	RAMPAGE_only	4	4	8	0.513728	2.521641	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72793657	STARD10|ENST00000543304.5	-	72754728,72755700,72757766,72758529,72759233,72780974,72792874,72793409	72755142,72755753,72757884,72758633,72759381,72781294,72792982,72793657	0.750000
thyroid_gland_female_adult_51_years	chr19	40267230	40267295	40267230	-	High_confidence	9	9	77	4.944632	3.811680	chr19	40267026	40267282	LINE|L2|L2c	+	chr19	40255157	40267635	STRG.123319.25	-	40255157,40256925,40265221,40267136	40255269,40257054,40265351,40267635	0.857143
thyroid_gland_female_adult_51_years	chr3	135965673	135965749	135965723	+	High_confidence	17	26	113	7.256408	5.557651	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.929204
thyroid_gland_female_adult_51_years	chr21	41426089	41426092	41426089	+	High_confidence	7	7	16	1.027456	3.373557	chr21	41426026	41426113	DNA|hAT-Charlie|MER5A	-	chr21	41426030	41459214	MX1|NM_002462.4	+	41426030,41427205,41427754,41430532,41432049,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41426263,41427304,41427866,41430608,41432175,41436029,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	0.937500
thyroid_gland_female_adult_51_years	chr4	145480761	145480772	145480771	+	High_confidence	5	6	14	0.899024	3.026987	chr4	145480763	145480842	LINE|L2|L2a	-	chr4	145481305	145514900	SMAD1|ENST00000507594.1	+	145481305,145514437	145481400,145514900	0.500000
thyroid_gland_female_adult_51_years	chr8	27977120	27977126	27977125	-	High_confidence	20	27	42	2.697072	4.784143	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977114	STRG.69307.3	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977114	0.928571
thyroid_gland_female_adult_51_years	chr12	46243208	46243223	46243208	-	RAMPAGE_only	4	4	9	0.577944	2.947703	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	1.000000
thyroid_gland_female_adult_51_years	chr3	187031694	187031711	187031694	+	RAMPAGE_only	3	3	13	0.834808	3.084963	chr3	187031440	187031734	SINE|Alu|AluSz	-	chr3	187025478	187043084	ST6GAL1|ENST00000423451.5	+	187025478,187038741,187042653	187025517,187038873,187043084	0.769231
thyroid_gland_female_adult_51_years	chr9	111284874	111284875	111284874	-	High_confidence	15	17	21	1.348536	3.246439	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.904762
thyroid_gland_female_adult_51_years	chr21	42955786	42955834	42955806	-	High_confidence	30	30	209	13.421143	5.760809	chr21	42955408	42955905	LTR|ERV1|HERVE-int	-	chr21	42944232	42955810	STRG.129287.1	-	42944232,42955689	42955584,42955810	0.976077
thyroid_gland_female_adult_51_years	chr8	11475907	11475941	11475907	-	High_confidence	46	49	108	6.935328	5.365462	chr8	11475885	11476030	LINE|L2|L2b	+	chr8	11444030	11475908	FAM167A|ENST00000648766.1	-	11444030,11475865	11444808,11475908	0.675926
thyroid_gland_female_adult_51_years	chr3	134485443	134485490	134485443	-	High_confidence	15	15	91	5.843656	5.750719	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.912088
thyroid_gland_female_adult_51_years	chr2	85432945	85432946	85432945	+	High_confidence	4	4	7	0.449512	2.521641	chr2	85432840	85432984	DNA|TcMar-Mariner|MARNA	-	chr2	85433714	85437027	STRG.16044.2	+	85433714,85434339,85435064,85435665,85436465,85436836	85434111,85434497,85435123,85435824,85436594,85437027	1.000000
thyroid_gland_female_adult_51_years	chr5	156972318	156972352	156972338	-	RAMPAGE_only	8	9	42	2.697072	4.061977	chr5	156972200	156972374	LTR|ERVL-MaLR|MLT1M	-	chr5	156919284	156965535	STRG.49826.1	-	156919284,156920463,156922098,156926262,156948415,156949650,156951511,156954414,156965516	156919541,156920503,156922216,156926312,156948499,156949731,156951790,156954668,156965535	0.904762
thyroid_gland_female_adult_51_years	chr12	114701212	114701213	114701212	-	High_confidence	7	7	10	0.642160	2.646439	chr12	114701162	114701316	SINE|MIR|MIRb	+	chr12	114699940	114701233	STRG.97367.7	-	114699940	114701233	0.900000
thyroid_gland_female_adult_51_years	chr15	55514631	55514652	55514631	-	High_confidence	100	115	272	17.466751	5.780042	chr15	55513405	55516274	LTR|ERV1|HERVE_a-int	-	chr15	55359017	55515365	STRG.107980.8	-	55359017,55365187,55371792,55376948,55378299,55385599,55389364,55432496,55434904,55439471,55450221,55491122,55497711,55498206	55360944,55365309,55372044,55377150,55378376,55385714,55389433,55432602,55435058,55439581,55450367,55491256,55497810,55515365	0.992647
thyroid_gland_female_adult_51_years	chr2	105329670	105329674	105329670	-	High_confidence	4	4	8	0.513728	2.500000	chr2	105329666	105329774	LTR|ERV1|LTR2752	-	chr2	105264389	105329714	TGFBRAP1|NM_001142621.2	-	105264389,105269271,105272854,105273543,105275559,105277613,105280381,105284315,105296355,105298510,105307613,105329624	105267559,105269705,105273014,105273690,105275703,105277671,105280723,105284398,105296510,105298705,105308315,105329714	1.000000
thyroid_gland_female_adult_51_years	chr2	159940427	159940490	159940489	-	RAMPAGE_only	4	4	21	1.348536	3.521928	chr2	159940405	159940556	SINE|Alu|AluJo	-	chr2	159932005	159945000	STRG.19233.12	-	159932005,159941745,159942126,159944905	159940567,159941992,159942159,159945000	0.904762
thyroid_gland_female_adult_51_years	chr7	53811930	53811935	53811930	-	High_confidence	24	24	50	3.210800	5.038319	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.720000
thyroid_gland_female_adult_51_years	chr7	107580475	107580507	107580506	+	High_confidence	6	6	16	1.027456	3.132915	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.750000
thyroid_gland_female_adult_51_years	chr19	44914321	44914322	44914321	+	High_confidence	9	9	10	0.642160	2.947703	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.900000
thyroid_gland_female_adult_51_years	chr10	65570512	65570522	65570521	+	High_confidence	18	31	57	3.660312	5.071913	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570535	65585775	LINC01515|ENST00000608678.5	+	65570535,65571424,65572934,65581611,65585484	65570759,65571579,65573056,65581673,65585775	0.526316
thyroid_gland_female_adult_51_years	chr2	141375547	141375603	141375602	-	RAMPAGE_only	3	3	12	0.770592	3.277613	chr2	141371204	141376570	LINE|L1|L1PB4	-	chr2	141332737	142131566	STRG.18346.8	-	141332737,141480395,141810278,142130647	141420450,141480533,141810401,142131566	0.916667
thyroid_gland_female_adult_51_years	chr6	73637602	73637617	73637602	-	RAMPAGE_only	17	17	27	1.733832	4.243856	chr6	73637447	73637797	LINE|L2|L2a	+	chr6	73593378	73654014	SLC17A5|NM_012434.4	-	73593378,73600350,73610399,73615314,73621803,73635381,73636620,73638411,73641690,73644406,73653792	73595214,73600441,73610547,73615447,73621962,73635500,73636707,73638499,73641924,73644603,73654014	0.518519
thyroid_gland_female_adult_51_years	chrX	71645570	71645663	71645655	-	High_confidence	4	4	29	1.862264	4.254196	chrX	71644370	71645918	Retroposon|SVA|SVA_B	-	chrX	71644411	71645399	STRG.134981.1	-	71644411,71645179	71644599,71645399	0.931034
thyroid_gland_female_adult_51_years	chr11	96411664	96411673	96411664	-	High_confidence	4	6	9	0.577944	2.947703	chr11	96405620	96411665	LINE|L1|L1PA2	-	chr11	96410674	96411650	STRG.90673.1	-	96410674	96411650	0.777778
thyroid_gland_female_adult_51_years	chr8	50934664	50934776	50934775	-	High_confidence	361	365	926	59.464012	4.883573	chr8	50934564	50935650	LINE|L1|L1MCb	+	chr8	50926383	50934774	STRG.69776.1	-	50926383,50934001,50934221,50934693	50926879,50934050,50934461,50934774	0.982721
thyroid_gland_female_adult_51_years	chr1	89272859	89272883	89272859	-	High_confidence	6	6	26	1.669616	4.001629	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.923077
thyroid_gland_female_adult_51_years	chr1	183355225	183355309	183355262	-	High_confidence	40	49	184	11.815743	4.766753	chr1	183355138	183355282	LINE|L2|L2c	+	chr1	183252543	183355349	STRG.9027.3	-	183252543,183261001,183261201,183278552,183283994,183284709,183286661,183290127,183292789,183293704,183355166	183252743,183261069,183261303,183278629,183284039,183284790,183286788,183290206,183292857,183293793,183355349	0.913043
thyroid_gland_female_adult_51_years	chr18	41632117	41632128	41632117	-	High_confidence	4	4	9	0.577944	2.750000	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41521337	41632124	KC6|ENST00000599934.1	-	41521337,41525354,41564798,41631999	41521496,41525526,41564898,41632124	0.666667
thyroid_gland_female_adult_51_years	chr19	3726268	3726284	3726268	+	RAMPAGE_only	4	4	9	0.577944	2.500000	chr19	3726316	3726584	SINE|Alu|AluSx1	+	chr19	3728128	3750809	STRG.121038.5	+	3728128,3728603,3730027,3731934,3733752,3734326,3735565,3735868,3736164,3738554,3738896,3740551,3743938,3746010,3746484,3746775,3747793,3750137,3750581	3728480,3728713,3730706,3732038,3733912,3734435,3735639,3735935,3736321,3738663,3739134,3740763,3744034,3746081,3746695,3746876,3748081,3750184,3750809	0.666667
thyroid_gland_female_adult_51_years	chr15	40375903	40375934	40375926	-	High_confidence	29	34	117	7.513272	5.790822	chr15	40375715	40376016	DNA|hAT-Charlie|Charlie2a	+	chr15	40357028	40376369	STRG.107187.4	-	40357028,40371838,40375622	40371017,40372094,40376369	0.811966
thyroid_gland_female_adult_51_years	chr6	28354137	28354206	28354205	-	High_confidence	54	59	185	11.879959	6.541645	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329363	28354204	STRG.52459.8	-	28329363,28336789,28353861	28329778,28336943,28354204	0.627027
thyroid_gland_female_adult_51_years	chr11	58578102	58578168	58578132	-	High_confidence	19	24	120	7.705920	6.045357	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	STRG.88483.4	-	58526870,58549785,58549972,58554840,58564154,58570555,58576733	58528191,58549867,58551232,58554940,58564201,58570713,58578166	0.958333
thyroid_gland_female_adult_51_years	chr2	169294606	169294694	169294606	-	RAMPAGE_only	5	6	38	2.440208	4.576618	chr2	169294369	169294576	DNA|hAT-Blackjack|MER63A	-	chr2	169127108	169362534	LRP2|ENST00000649046.1	-	169127108,169129012,169132573,169137391,169138576,169139250,169139542,169140454,169142673,169145746,169146738,169150897,169152798,169154459,169156273,169157370,169162471,169165931,169168538,169169701,169170550,169172014,169173095,169173918,169175192,169176410,169177802,169181447,169182166,169185502,169187969,169191831,169193760,169196910,169198785,169201627,169202755,169203981,169205478,169206022,169206329,169209452,169211967,169213656,169216252,169220453,169225309,169226421,169231713,169233410,169235839,169237102,169238090,169239526,169240987,169242955,169243402,169244692,169246704,169247377,169256105,169257123,169259024,169270903,169272926,169275035,169277744,169279371,169280349,169282872,169289025,169290844,169292252,169294147,169294599,169307280,169318761,169320776,169362320	169128830,169129084,169132681,169137493,169138706,169139371,169139610,169140545,169142793,169145923,169146959,169151026,169152964,169154603,169156405,169157502,169162600,169166054,169168676,169169818,169170667,169172134,169173224,169174164,169175389,169176588,169178026,169181618,169182319,169186019,169188265,169192033,169193892,169197030,169198911,169201870,169202959,169204271,169205637,169206188,169207250,169209641,169212207,169213870,169216430,169220563,169225453,169226588,169231842,169233588,169236068,169237287,169238302,169239775,169241365,169243072,169243522,169244932,169246986,169247515,169256236,169257249,169259217,169271107,169273067,169275238,169277951,169279595,169280519,169283001,169289145,169290997,169292369,169294261,169294710,169307397,169318884,169320884,169362534	0.973684
thyroid_gland_female_adult_51_years	chr18	35467117	35467130	35467117	-	High_confidence	6	6	15	0.963240	3.039149	chr18	35467057	35467118	DNA|hAT-Charlie|MER5A	-	chr18	35445742	35467081	AC007998.3|ENST00000591141.1	-	35445742,35446874,35466623	35445900,35446955,35467081	0.733333
thyroid_gland_female_adult_51_years	chr15	88635654	88635659	88635654	+	High_confidence	3	3	8	0.513728	2.807355	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NR_130134.1	+	88635636,88652109,88655414	88635700,88652310,88656344	0.750000
thyroid_gland_female_adult_51_years	chr8	133499148	133499187	133499148	-	High_confidence	4	4	15	0.963240	3.235926	chr8	133499058	133499257	SINE|MIR|MIRb	+	chr8	133475883	133499361	ST3GAL1|ENST00000523855.1	-	133475883,133476277,133499134	133476074,133476600,133499361	0.866667
thyroid_gland_female_adult_51_years	chr1	99993189	99993215	99993197	+	High_confidence	5	5	21	1.348536	3.681881	chr1	99993045	99993378	LINE|L1|L1ME1	-	chr1	99993042	100015341	SLC35A3|ENST00000422078.1	+	99993042,99993536,99999260,100007033,100011364,100015301	99993098,99993741,99999415,100007156,100011533,100015341	0.809524
thyroid_gland_female_adult_51_years	chr8	143558019	143558020	143558019	+	High_confidence	14	14	14	0.899024	3.235926	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.857143
thyroid_gland_female_adult_51_years	chr7	107580552	107580644	107580552	+	High_confidence	4	4	41	2.632856	4.684146	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.853659
thyroid_gland_female_adult_51_years	chr11	123060124	123060253	123060168	-	High_confidence	33	36	309	19.842743	5.604969	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.553398
thyroid_gland_female_adult_51_years	chr1	189149633	189149656	189149655	+	High_confidence	13	14	54	3.467664	4.831289	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	189149654	189605290	STRG.9227.1	+	189149654,189150541,189307728,189452040,189568328,189603482,189605097	189149876,189150759,189307878,189452170,189568395,189603622,189605290	0.722222
thyroid_gland_female_adult_51_years	chr2	107529464	107529512	107529489	+	High_confidence	60	76	216	13.870655	6.488852	chr2	107529145	107529729	LTR|ERV1|LTR9	-	chr2	107529486	107533846	STRG.17091.3	+	107529486	107533846	0.902778
thyroid_gland_female_adult_51_years	chr16	2205826	2205874	2205828	+	High_confidence	3	5	20	1.284320	3.621928	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	1.000000
thyroid_gland_female_adult_51_years	chr14	81263413	81263463	81263462	-	RAMPAGE_only	2	2	8	0.513728	2.750000	chr14	81263256	81263567	SINE|Alu|AluSx	+	chr14	81260649	81427212	STON2|NM_033104.3	-	81260649,81276900,81370987,81395893,81398294,81427101	81270872,81278739,81371185,81396178,81398580,81427212	1.000000
thyroid_gland_female_adult_51_years	chr17	21001586	21001610	21001609	-	RAMPAGE_only	4	5	9	0.577944	3.000000	chr17	21001557	21001631	DNA|hAT-Charlie|MER58C	+	chr17	20999592	21043039	USP22|ENST00000261497.8	-	20999592,21004201,21004927,21006895,21007869,21011150,21012829,21015751,21017941,21019083,21021112,21028541,21042664	21003073,21004351,21004990,21006987,21007996,21011309,21012935,21015899,21018111,21019185,21021226,21028674,21043039	0.888889
thyroid_gland_female_adult_51_years	chr6	148790883	148790885	148790884	-	High_confidence	13	15	22	1.412752	3.921928	chr6	148790557	148790913	LTR|ERVL|LTR16	+	chr6	148788540	148790937	STRG.58772.1	-	148788540	148790937	0.909091
thyroid_gland_female_adult_51_years	chr16	63618044	63618046	63618045	-	High_confidence	102	134	149	9.568183	6.487961	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63514065	63618046	STRG.112516.2	-	63514065,63528677,63617692	63515974,63531304,63618046	0.624161
thyroid_gland_female_adult_51_years	chr16	20446996	20446997	20446996	-	High_confidence	8	8	10	0.642160	2.503258	chr16	20446813	20447004	SINE|MIR|MIRb	+	chr16	20441249	20447000	AC137056.1|ENST00000575772.1	-	20441249,20442225,20445992,20446866	20441586,20442388,20446111,20447000	0.800000
thyroid_gland_female_adult_51_years	chr19	20750334	20750371	20750334	-	High_confidence	58	66	274	17.595183	6.051378	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746873	20750375	STRG.122418.1	-	20746873,20749986,20750237	20749661,20750132,20750375	0.602190
thyroid_gland_female_adult_51_years	chr19	11196100	11196157	11196126	-	High_confidence	3	3	18	1.155888	3.572469	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.888889
thyroid_gland_female_adult_51_years	chr5	34244725	34244761	34244760	-	High_confidence	3	3	10	0.642160	2.947703	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.700000
thyroid_gland_female_adult_51_years	chr8	109581057	109581118	109581081	-	High_confidence	3	3	18	1.155888	2.558051	chr8	109580602	109581257	LINE|L2|L2c	+	chr8	109575974	109581058	SYBU|ENST00000527707.5	-	109575974,109577867,109579798,109580878	109576013,109578017,109580002,109581058	0.944444
thyroid_gland_female_adult_51_years	chr10	79980422	79980444	79980422	-	RAMPAGE_only	3	3	8	0.513728	3.000000	chr10	79979245	79981467	LINE|L1|L1M1	+	chr10	79937739	79982586	STRG.83108.2	-	79937739,79940704,79941397,79941953,79942387,79942762,79946460,79982217	79938228,79940788,79941514,79942070,79942504,79942879,79946662,79982586	0.875000
thyroid_gland_female_adult_51_years	chr2	113237157	113237229	113237157	-	High_confidence	2	2	10	0.642160	3.121928	chr2	113237106	113237236	SINE|MIR|MIR	-	chr2	113235344	113236929	PAX8|ENST00000554352.1	-	113235344,113236600	113235582,113236929	0.900000
thyroid_gland_female_adult_51_years	chr13	98988460	98988461	98988460	-	RAMPAGE_only	349	358	382	24.530510	5.402797	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98793486	98978084	DOCK9|NM_001130048.1	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,98977783	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,98978084	0.842932
thyroid_gland_female_adult_51_years	chr15	45010587	45010588	45010587	+	RAMPAGE_only	18	18	20	1.284320	3.446439	chr15	45010299	45010775	LTR|ERV1|LTR12F	+	chr15	45023103	45075089	SORD|NM_003104.5	+	45023103,45040407,45043256,45061066,45065270,45068180,45068876,45072316,45073364	45023349,45040441,45043421,45061226,45065389,45068246,45069052,45072438,45075089	0.850000
thyroid_gland_female_adult_51_years	chr19	20362568	20362633	20362568	+	High_confidence	25	26	153	9.825047	6.094149	chr19	20362580	20362814	LTR|ERV1|HERVS71-int	+	chr19	20362593	20371952	STRG.122324.1	+	20362593,20369177	20362794,20371952	0.973856
thyroid_gland_female_adult_51_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	16	16	16	1.027456	3.155639	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
thyroid_gland_female_adult_51_years	chr18	14971719	14971726	14971719	-	High_confidence	3	3	6	0.385296	2.584963	chr18	14971322	14971848	LTR|ERVL-MaLR|MLT1G3	+	chr18	14970799	14972169	STRG.118667.1	-	14970799	14972169	0.833333
thyroid_gland_female_adult_51_years	chr2	159996308	159996324	159996323	-	RAMPAGE_only	167	171	257	16.503511	6.825013	chr2	159995925	159997907	LINE|L1|L1MCa	-	chr2	159932005	160062610	STRG.19233.8	-	159932005,159942126,159944905,159946800,159947418,159949607,159955198,159955697,159956509,159967538,159969255,159970147,159976067,159976684,159977283,159979829,159983927,159987155,159996107,159999663,160005651,160013262,160016613,160020105,160022664,160028217,160028849,160032958,160042024,160044773,160062294	159941992,159942159,159945082,159946917,159947559,159951578,159955346,159955828,159956627,159967678,159969359,159970212,159976225,159976720,159977416,159979914,159984073,159987358,159999340,160004866,160005821,160013375,160016712,160020263,160022859,160028361,160028963,160033132,160042198,160045157,160062610	0.859922
thyroid_gland_female_adult_51_years	chr1	12356412	12356439	12356414	+	High_confidence	5	7	19	1.220104	2.582060	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12356350	12510346	VPS13D|ENST00000646411.1	+	12356350,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12356524,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	0.894737
thyroid_gland_female_adult_51_years	chr1	60949435	60949449	60949443	-	High_confidence	49	73	154	9.889263	5.179692	chr1	60949259	60949438	SINE|MIR|MIRb	-	chr1	60940243	60949449	STRG.3814.3	-	60940243,60941179,60949365	60940631,60941252,60949449	0.779221
thyroid_gland_female_adult_51_years	chr3	157582731	157582745	157582731	-	High_confidence	2	2	8	0.513728	2.750000	chr3	157579686	157587547	LTR|ERV1|HERVE_a-int	-	chr3	157581392	157582021	STRG.31688.1	-	157581392	157582021	1.000000
thyroid_gland_female_adult_51_years	chr11	76401793	76401803	76401793	+	RAMPAGE_only	4	5	16	1.027456	3.240224	chr11	76401492	76401803	SINE|Alu|AluSq2	+	chr11	76381324	76408136	GVQW3|ENST00000321844.6	+	76381324,76403659	76382210,76408136	0.937500
thyroid_gland_female_adult_51_years	chr9	129488856	129488905	129488856	+	High_confidence	32	32	106	6.806896	4.863046	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.981132
thyroid_gland_female_adult_51_years	chr17	2975621	2975682	2975628	+	High_confidence	7	7	42	2.697072	4.909825	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975613	3037739	STRG.114055.1	+	2975613,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2975771,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037739	0.904762
thyroid_gland_female_adult_51_years	chr5	117455061	117455102	117455061	+	High_confidence	6	6	23	1.476968	4.061482	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.826087
thyroid_gland_female_adult_51_years	chr3	33838228	33838261	33838239	+	RAMPAGE_only	3	3	14	0.899024	3.392747	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.928571
thyroid_gland_female_adult_51_years	chr2	96638016	96638023	96638022	-	High_confidence	6	6	12	0.770592	3.277613	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.583333
thyroid_gland_female_adult_51_years	chr8	11864380	11864460	11864408	-	RAMPAGE_only	5	5	29	1.862264	4.253434	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.586207
thyroid_gland_female_adult_51_years	chr4	37668422	37668470	37668422	+	High_confidence	3	3	10	0.642160	2.646439	chr4	37668201	37670053	Retroposon|SVA|SVA_D	+	chr4	37668337	37674606	STRG.35789.1	+	37668337,37674494	37668958,37674606	0.800000
thyroid_gland_female_adult_51_years	chr6	110996820	110996884	110996875	+	RAMPAGE_only	6	6	21	1.348536	2.684017	chr6	110996790	110997100	SINE|Alu|AluSz6	-	chr6	110982315	111024327	RPF2|ENST00000425871.1	+	110982315,110985005,110989027,110991746,110997182,110999710,111008037,111015753,111024182	110982503,110985138,110989065,110991786,110997264,110999787,111008137,111015856,111024327	1.000000
thyroid_gland_female_adult_51_years	chr21	45563011	45563027	45563026	-	RAMPAGE_only	8	8	14	0.899024	3.664498	chr21	45562422	45564060	LINE|L1|L1MC3	+	chr21	45498200	45544411	SLC19A1|ENST00000567670.5	-	45498200,45525816,45530769,45531388,45537770,45544136	45498612,45525958,45530971,45532148,45538008,45544411	0.785714
thyroid_gland_female_adult_51_years	chr20	24930628	24930692	24930639	+	High_confidence	371	376	2619	168.181693	6.281302	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930620	24932983	STRG.126073.1	+	24930620,24931346	24930774,24932983	0.979000
thyroid_gland_female_adult_51_years	chr12	123390725	123390761	123390760	+	High_confidence	7	7	20	1.284320	3.826875	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.800000
thyroid_gland_female_adult_51_years	chr16	2770192	2770208	2770192	+	High_confidence	7	7	13	0.834808	2.855389	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2770354	2771410	SRRM2|ENST00000573692.1	+	2770354,2770603,2770857,2771368	2770465,2770717,2771049,2771410	0.692308
thyroid_gland_female_adult_51_years	chr17	4143193	4143215	4143199	+	High_confidence	100	101	270	17.338319	5.630755	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.988889
thyroid_gland_female_adult_51_years	chr11	17282830	17282874	17282859	+	RAMPAGE_only	6	6	26	1.669616	4.243856	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.923077
thyroid_gland_female_adult_51_years	chr9	129489111	129489145	129489125	+	High_confidence	37	51	126	8.091215	6.070828	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.769841
thyroid_gland_female_adult_51_years	chr2	174410277	174410288	174410277	+	High_confidence	4	4	10	0.642160	2.503258	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.600000
thyroid_gland_female_adult_51_years	chr6	36914686	36914687	36914686	+	RAMPAGE_only	6	6	9	0.577944	2.500000	chr6	36914707	36914996	SINE|Alu|AluSz6	+	chr6	36885863	36928964	C6orf89|NM_152734.3	+	36885863,36899425,36902220,36914283,36914553,36916444,36919577,36923346	36886028,36899633,36902434,36914435,36914693,36916574,36919701,36928964	0.888889
thyroid_gland_female_adult_51_years	chr19	19958453	19958454	19958453	+	High_confidence	16	16	24	1.541184	3.970176	chr19	19958163	19958689	LTR|ERVL|LTR66	+	chr19	19958001	19964881	STRG.122264.1	+	19958001,19958488,19963118	19958144,19958554,19964881	1.000000
thyroid_gland_female_adult_51_years	chr12	104864903	104864924	104864923	+	High_confidence	5	5	12	0.770592	3.084963	chr12	104863461	104865746	LINE|L1|HAL1	-	chr12	104864962	104870412	STRG.96936.1	+	104864962,104870161	104865071,104870412	0.750000
thyroid_gland_female_adult_51_years	chr2	70257706	70257707	70257706	+	High_confidence	6	6	9	0.577944	2.750000	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.888889
thyroid_gland_female_adult_51_years	chr9	69122987	69123047	69123019	+	High_confidence	10	10	52	3.339232	4.177546	chr9	69122999	69123107	DNA|hAT-Charlie|MER5A1	+	chr9	69123047	69246746	TJP2|ENST00000647986.1	+	69123047,69151650,69185086,69212547,69216338,69218256,69220886,69225303,69226021,69227764,69227980,69229183,69230081,69234438,69236027,69236948,69237877,69238709,69239936,69246689	69123113,69151771,69185204,69212601,69216463,69218359,69221496,69225407,69226175,69227873,69228114,69229250,69230232,69234547,69236238,69237136,69237973,69238789,69240147,69246746	0.961538
thyroid_gland_female_adult_51_years	chr6	35566953	35566954	35566953	-	RAMPAGE_only	7	9	10	0.642160	2.947703	chr6	35566829	35567331	LTR|ERV1|LTR10B	-	chr6	35563168	35563525	STRG.52978.1	-	35563168	35563525	0.700000
thyroid_gland_female_adult_51_years	chr9	5609016	5609036	5609020	-	RAMPAGE_only	3	5	11	0.706376	3.321928	chr9	5608852	5609009	LTR|ERVL|MLT2F	-	chr9	5577297	5629974	STRG.73917.1	-	5577297,5600809,5604891,5629566	5577511,5600829,5604935,5629974	0.727273
thyroid_gland_female_adult_51_years	chr2	48722597	48722598	48722597	+	RAMPAGE_only	6	8	8	0.513728	3.000000	chr2	48722394	48722813	LTR|ERVL-MaLR|MSTA	+	chr2	48768953	48776481	STON1-GTF2A1L|ENST00000463040.5	+	48768953,48776279	48769121,48776481	0.875000
thyroid_gland_female_adult_51_years	chr21	29077437	29077501	29077486	+	High_confidence	11	11	41	2.632856	4.596483	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.560976
thyroid_gland_female_adult_51_years	chr7	107580245	107580272	107580264	+	High_confidence	1406	1411	6644	426.651077	6.950638	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.931066
thyroid_gland_female_adult_51_years	chr22	37849317	37849333	37849317	-	High_confidence	37	43	127	8.155431	5.298900	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.984252
thyroid_gland_female_adult_51_years	chr18	39800313	39800316	39800313	-	High_confidence	4	4	8	0.513728	2.521641	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.500000
thyroid_gland_female_adult_51_years	chr9	94145101	94145115	94145114	-	High_confidence	9	9	20	1.284320	3.446439	chr9	94145103	94145395	SINE|Alu|AluSx1	+	chr9	94144687	94145153	STRG.77386.1	-	94144687	94145153	0.600000
thyroid_gland_female_adult_51_years	chr13	93454880	93454896	93454880	+	High_confidence	36	45	82	5.265712	4.087390	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93455067	94407399	STRG.100160.2	+	93455067,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93455438,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407399	0.890244
thyroid_gland_female_adult_51_years	chr2	26298400	26298428	26298427	+	High_confidence	9	9	19	1.220104	3.721612	chr2	26298403	26299683	LTR|ERV1|HERV15-int	+	chr2	26298883	26306197	STRG.13555.1	+	26298883,26303830	26299038,26306197	0.789474
thyroid_gland_female_adult_51_years	chr4	2867814	2867851	2867850	+	High_confidence	6	6	20	1.284320	4.021928	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
thyroid_gland_female_adult_51_years	chr4	41118092	41118093	41118092	-	RAMPAGE_only	11	11	11	0.706376	3.095795	chr4	41117925	41118210	SINE|Alu|AluJb	+	chr4	40814606	41214458	APBB2|ENST00000513140.5	-	40814606,40821870,40823643,40825886,40827131,40830462,40890363,40893264,40934455,40934613,40944864,41013582,41033235,41065575,41100638,41142986,41214404	40816259,40822050,40823759,40825967,40827219,40830577,40890491,40893411,40934516,40934699,40945070,41014398,41033304,41065673,41100750,41143142,41214458	0.909091
thyroid_gland_female_adult_51_years	chr6	150392111	150392158	150392111	+	RAMPAGE_only	5	5	26	1.669616	3.763342	chr6	150392047	150392197	SINE|Alu|AluJb	-	chr6	150368891	150405969	IYD|ENST00000344419.7	+	150368891,150389351,150392344,150394098,150398054	150369209,150389543,150392504,150394255,150405969	0.769231
thyroid_gland_female_adult_51_years	chr14	81169733	81169776	81169733	+	RAMPAGE_only	6	6	22	1.412752	4.061482	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81168718	81171714	STRG.104801.1	+	81168718,81169660	81168803,81171714	0.863636
thyroid_gland_female_adult_51_years	chr16	20676160	20676208	20676161	-	RAMPAGE_only	5	7	17	1.091672	3.702820	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20691256	ACSM1|ENST00000307493.8	-	20623236,20624095,20625422,20627188,20636738,20637370,20640460,20661793,20669826,20671530,20682255,20685192,20690996	20623572,20624215,20625522,20627316,20636840,20637451,20640584,20661873,20669986,20671671,20682463,20685403,20691256	0.529412
thyroid_gland_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	414	515	986	63.316972	4.856635	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.982759
thyroid_gland_female_adult_51_years	chr14	95516120	95516121	95516120	+	High_confidence	9	11	13	0.834808	3.418296	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.923077
thyroid_gland_female_adult_51_years	chr15	24920393	24920404	24920393	+	High_confidence	2	2	8	0.513728	2.750000	chr15	24920380	24920543	DNA|hAT-Charlie|MER5A	-	chr15	24919550	24977850	STRG.105985.9	+	24919550,24962113,24967931,24974310,24975357,24976304,24976876,24977777	24920124,24962209,24968082,24974456,24975509,24976416,24977029,24977850	0.875000
thyroid_gland_female_adult_51_years	chr13	43055390	43055407	43055406	+	RAMPAGE_only	3	4	6	0.385296	2.584963	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.500000
thyroid_gland_female_adult_51_years	chr4	25249966	25249992	25249966	-	High_confidence	5	5	15	0.963240	3.807355	chr4	25248810	25250216	Retroposon|SVA|SVA_B	-	chr4	25249096	25250133	STRG.35606.1	-	25249096,25249492	25249424,25250133	0.866667
thyroid_gland_female_adult_51_years	chr17	28233986	28234046	28234030	-	High_confidence	121	126	845	54.262517	5.985910	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28230609	28234043	STRG.115255.1	-	28230609,28233917	28233342,28234043	0.867456
thyroid_gland_female_adult_51_years	chr1	151769797	151769856	151769855	-	High_confidence	3	3	13	0.834808	3.238901	chr1	151768666	151770134	Retroposon|SVA|SVA_C	-	chr1	151763383	151769501	AL589765.4|ENST00000512280.1	-	151763383,151768137,151769343	151763501,151768243,151769501	0.615385
thyroid_gland_female_adult_51_years	chrX	73837439	73837504	73837473	-	RAMPAGE_only	3	3	22	1.412752	3.204448	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
thyroid_gland_female_adult_51_years	chr12	52118182	52118262	52118217	-	High_confidence	6	7	42	2.697072	5.106603	chr12	52116006	52118404	LTR|ERV1|HERVE-int	-	chr12	52104447	52118349	STRG.94457.1	-	52104447,52108068,52115995	52106001,52108209,52118349	1.000000
thyroid_gland_female_adult_51_years	chr2	26299942	26299951	26299942	+	RAMPAGE_only	8	8	16	1.027456	3.373557	chr2	26299720	26300034	LTR|ERV1|HERV15-int	+	chr2	26298883	26306197	STRG.13555.1	+	26298883,26303830	26299038,26306197	0.562500
thyroid_gland_female_adult_51_years	chr1	235379896	235379913	235379907	+	High_confidence	15	15	65	4.174040	3.666934	chr1	235379666	235379964	SINE|Alu|AluSz6	+	chr1	235380018	235448968	TBCE|ENST00000642339.1	+	235380018,235414432,235419472,235427139,235430704,235435744,235436385,235436543,235437321,235438768,235441813,235442851,235448348,235448669	235380149,235414618,235419561,235427239,235430804,235435840,235436450,235436608,235437474,235438922,235441882,235442911,235448440,235448968	0.784615
thyroid_gland_female_adult_51_years	chr3	50230995	50230996	50230995	+	High_confidence	8	8	8	0.513728	2.500000	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	1.000000
thyroid_gland_female_adult_51_years	chr4	56977899	56977912	56977899	+	High_confidence	4	4	10	0.642160	2.721928	chr4	56977901	56978210	SINE|Alu|AluY	+	chr4	56977781	56978961	POLR2B|ENST00000495311.1	+	56977781,56978639	56978000,56978961	0.900000
thyroid_gland_female_adult_51_years	chr2	206161410	206161455	206161454	+	High_confidence	5	5	24	1.541184	3.621654	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	0.958333
thyroid_gland_female_adult_51_years	chr3	164451400	164451402	164451400	+	High_confidence	22	32	41	2.632856	4.853056	chr3	164449656	164452200	LINE|L1|L1PA15	-	chr3	164451286	164623087	STRG.32113.1	+	164451286,164532285,164608991,164619324	164451535,164532393,164609068,164623087	0.634146
thyroid_gland_female_adult_51_years	chr6	77369117	77369167	77369166	-	RAMPAGE_only	44	61	202	12.971631	6.695567	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77151491	77273309	STRG.54552.3	-	77151491,77271339,77273026	77151974,77271493,77273309	0.524752
thyroid_gland_female_adult_51_years	chr20	44696111	44696112	44696111	-	High_confidence	10	10	14	0.899024	3.392747	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.785714
thyroid_gland_female_adult_51_years	chr7	87039869	87039870	87039869	-	High_confidence	6	6	8	0.513728	2.807355	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.500000
thyroid_gland_female_adult_51_years	chr6	141404139	141404154	141404141	+	High_confidence	8	13	29	1.862264	3.245447	chr6	141403283	141405210	LTR|ERV1|LOR1-int	+	chr6	141404108	141411559	STRG.57983.1	+	141404108	141411559	0.793103
thyroid_gland_female_adult_51_years	chr12	50924078	50924079	50924078	+	High_confidence	12	18	18	1.155888	3.127987	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	1.000000
thyroid_gland_female_adult_51_years	chr21	32661248	32661263	32661248	+	High_confidence	7	7	28	1.798048	3.763342	chr21	32660023	32664304	LTR|ERV1|HERVE_a-int	+	chr21	32661246	32662054	STRG.128709.1	+	32661246,32661498	32661393,32662054	0.857143
thyroid_gland_female_adult_51_years	chr14	100291506	100291507	100291506	-	High_confidence	16	16	20	1.284320	3.826875	chr14	100291489	100291554	SINE|MIR|MIR1_Amn	-	chr14	100279958	100291456	AL157871.6|ENST00000553954.1	-	100279958,100291357	100280065,100291456	0.500000
thyroid_gland_female_adult_51_years	chrX	74254586	74254632	74254631	-	RAMPAGE_only	6	6	15	0.963240	3.521641	chrX	74254333	74256146	LTR|ERV1|HUERS-P3b-int	+	chrX	74218546	74292075	STRG.135363.3	-	74218546,74280930,74281701,74284742,74291757	74280494,74281085,74281848,74284948,74292075	0.933333
thyroid_gland_female_adult_51_years	chr6	31587007	31587010	31587009	+	High_confidence	7	11	13	0.834808	2.855389	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.923077
thyroid_gland_female_adult_51_years	chr1	189149762	189149763	189149762	+	High_confidence	15	15	16	1.027456	3.640224	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	189149654	189605290	STRG.9227.1	+	189149654,189150541,189307728,189452040,189568328,189603482,189605097	189149876,189150759,189307878,189452170,189568395,189603622,189605290	0.625000
thyroid_gland_female_adult_51_years	chr20	34022607	34022662	34022661	+	RAMPAGE_only	5	5	24	1.541184	3.675311	chr20	34022680	34022788	SINE|MIR|MIR3	+	chr20	34029860	34077129	RALY|ENST00000442805.1	+	34029860,34031521,34072065,34073562,34075873,34076701,34077027	34029927,34031604,34072330,34073635,34076040,34076815,34077129	0.708333
thyroid_gland_female_adult_51_years	chr2	3536827	3536846	3536845	-	High_confidence	6	6	10	0.642160	2.947703	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3533223	3536869	AC108488.1|ENST00000438482.1	-	3533223,3534112,3536723	3533848,3534255,3536869	0.600000
thyroid_gland_female_adult_51_years	chr19	18938387	18938409	18938387	-	High_confidence	3	3	13	0.834808	2.918296	chr19	18938201	18938361	SINE|MIR|MIR3	-	chr19	18929438	18938982	HOMER3|ENST00000594439.5	-	18929438,18931324,18931508,18931975,18932923,18938352,18938727,18938968	18929634,18931411,18931625,18932132,18933045,18938484,18938884,18938982	0.923077
thyroid_gland_female_adult_51_years	chr19	20271642	20271652	20271642	-	High_confidence	4	4	11	0.706376	3.121928	chr19	20271392	20271698	SINE|Alu|AluSx3	+	chr19	20263216	20271983	STRG.122312.7	-	20263216	20271983	0.818182
thyroid_gland_female_adult_51_years	chr20	50057178	50057222	50057204	-	High_confidence	13	14	70	4.495120	5.604830	chr20	50057071	50057285	SINE|MIR|MIRb	+	chr20	50053156	50057220	STRG.127068.1	-	50053156,50054356,50057067	50054026,50054559,50057220	0.614286
thyroid_gland_female_adult_51_years	chr3	29280832	29280866	29280838	-	High_confidence	3	3	22	1.412752	4.121928	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.590909
thyroid_gland_female_adult_51_years	chr2	29130347	29130353	29130347	-	High_confidence	35	35	53	3.403448	4.646370	chr2	29130249	29130396	LTR|ERV1|LTR109A2	-	chr2	29124100	29130443	STRG.13737.1	-	29124100	29130443	0.943396
thyroid_gland_female_adult_51_years	chr17	1769647	1769668	1769667	+	RAMPAGE_only	3	3	8	0.513728	2.807355	chr17	1769649	1769740	DNA|TcMar-Tigger|Tigger19a	+	chr17	1766273	1771080	SERPINF1|ENST00000577053.1	+	1766273,1766902,1769851,1771028	1766661,1766994,1770050,1771080	0.625000
thyroid_gland_female_adult_51_years	chr3	113810084	113810128	113810105	+	RAMPAGE_only	5	5	26	1.669616	3.580462	chr3	113810029	113810341	SINE|Alu|AluSp	-	chr3	113747018	113812056	ATP6V1A|ENST00000273398.7	+	113747018,113778740,113781049,113784223,113784695,113786231,113788712,113789731,113794871,113795089,113795875,113798242,113803582,113805353,113809334	113747113,113778835,113781178,113784438,113784833,113786383,113788875,113789840,113794994,113795204,113795939,113798446,113803677,113805525,113812056	1.000000
thyroid_gland_female_adult_51_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	7	7	9	0.577944	2.750000	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.555556
thyroid_gland_female_adult_51_years	chr8	91350395	91350439	91350407	+	RAMPAGE_only	5	5	17	1.091672	3.577820	chr8	91350361	91351015	LINE|L1|L1ME1	-	chr8	91249306	91393836	STRG.71433.4	+	91249306,91249538,91289135,91295530,91318215,91334294,91338149,91340403,91343352,91352900,91362352,91363471,91366579,91369784,91389337,91393796	91249413,91249844,91289246,91295703,91318380,91334447,91338232,91340551,91351887,91352996,91362459,91363538,91366717,91369833,91389438,91393836	0.941176
thyroid_gland_female_adult_51_years	chr17	59651214	59651236	59651214	+	RAMPAGE_only	5	5	15	0.963240	3.506891	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	1.000000
thyroid_gland_female_adult_51_years	chr14	100291603	100291647	100291603	-	High_confidence	6	6	27	1.733832	4.384517	chr14	100291489	100291554	SINE|MIR|MIR1_Amn	-	chr14	100279958	100291456	AL157871.6|ENST00000553954.1	-	100279958,100291357	100280065,100291456	0.555556
thyroid_gland_female_adult_51_years	chr9	128684459	128684485	128684459	-	High_confidence	10	10	78	5.008848	5.535026	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128682685	128684461	STRG.79661.10	-	128682685	128684461	0.641026
thyroid_gland_female_adult_51_years	chr10	72355123	72355146	72355145	-	High_confidence	6	6	20	1.284320	3.684184	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
thyroid_gland_female_adult_51_years	chr3	50816069	50816134	50816133	+	RAMPAGE_only	5	5	19	1.220104	3.215841	chr3	50815749	50816183	LTR|ERV1|LTR54B	-	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.684211
thyroid_gland_female_adult_51_years	chr4	9479964	9479985	9479984	+	RAMPAGE_only	7	7	24	1.541184	3.762267	chr4	9476314	9480369	LTR|ERV1|HERVE-int	+	chr4	9483717	9484702	OR7E85P|ENST00000512164.1	+	9483717	9484702	0.583333
thyroid_gland_female_adult_51_years	chr13	52570292	52570324	52570323	+	RAMPAGE_only	12	12	30	1.926480	3.507752	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.833333
thyroid_gland_female_adult_51_years	chr15	65642904	65642951	65642904	+	High_confidence	6	6	41	2.632856	4.832923	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	1.000000
thyroid_gland_female_adult_51_years	chr1	16017955	16017957	16017955	-	High_confidence	2	4	6	0.385296	2.584963	chr1	16017886	16017984	LINE|CR1|L3	+	chr1	16015498	16018005	HSPB7|ENST00000406363.2	-	16015498,16017073,16017764	16015759,16017219,16018005	0.666667
thyroid_gland_female_adult_51_years	chr5	50443255	50443258	50443255	-	High_confidence	5	5	14	0.899024	3.180833	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.642857
thyroid_gland_female_adult_51_years	chr2	55618852	55618881	55618869	-	High_confidence	7	7	16	1.027456	3.323231	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.937500
thyroid_gland_female_adult_51_years	chr18	35467058	35467081	35467080	-	High_confidence	41	41	61	3.917176	5.033451	chr18	35467057	35467118	DNA|hAT-Charlie|MER5A	-	chr18	35433051	35467081	STRG.119257.7	-	35433051,35446874,35466623	35438289,35446955,35467081	0.786885
thyroid_gland_female_adult_51_years	chr2	186602121	186602141	186602121	+	RAMPAGE_only	2	2	6	0.385296	2.584963	chr2	186602116	186602175	LINE|RTE-BovB|MamRTE1	-	chr2	186600204	186677441	ITGAV|ENST00000433736.6	+	186600204,186602020,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186600381,186602151,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186677441	0.833333
thyroid_gland_female_adult_51_years	chr2	44327027	44327035	44327028	-	RAMPAGE_only	9	14	26	1.669616	4.334963	chr2	44326986	44327071	DNA|hAT-Charlie|MER58C	+	chr2	44320265	44323342	PREPL|ENST00000444696.5	-	44320265,44322730,44323261	44320643,44322854,44323342	0.692308
thyroid_gland_female_adult_51_years	chr7	45192644	45192649	45192644	-	High_confidence	3	3	8	0.513728	2.750000	chr7	45192444	45192721	LTR|ERV1|LOR1a	-	chr7	45192275	45192615	STRG.62447.1	-	45192275	45192615	0.625000
thyroid_gland_female_adult_51_years	chr8	39902409	39902410	39902409	+	High_confidence	12	12	16	1.027456	3.875000	chr8	39902359	39903639	LTR|ERV1|LTR49-int	+	chr8	39902374	39928426	IDO1|ENST00000522495.5	+	39902374,39913000,39913888,39917874,39918087,39918814,39920099,39922551,39923468,39924720,39925222,39927829	39902448,39913148,39914009,39917970,39918207,39918933,39920114,39922651,39923586,39924772,39925371,39928426	0.812500
thyroid_gland_female_adult_51_years	chr1	45522858	45522876	45522858	-	High_confidence	6	6	11	0.706376	2.721928	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.909091
thyroid_gland_female_adult_51_years	chr12	91179462	91179526	91179462	-	High_confidence	1613	1665	7843	503.646056	7.539098	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91146165	91179513	DCN|ENST00000546391.5	-	91146165,91151653,91153095,91178341,91179361	91146252,91151792,91153189,91178585,91179513	0.514089
thyroid_gland_female_adult_51_years	chr19	46350849	46350851	46350849	+	RAMPAGE_only	4	6	8	0.513728	2.750000	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	1.000000
thyroid_gland_female_adult_51_years	chr15	74901221	74901222	74901221	-	RAMPAGE_only	6	6	6	0.385296	2.584963	chr15	74901174	74901275	SINE|Alu|AluJb	+	chr15	74899992	74906796	FAM219B|ENST00000566894.1	-	74899992,74904663,74906586	74902786,74906365,74906796	1.000000
thyroid_gland_female_adult_51_years	chr3	107883175	107883189	107883188	+	High_confidence	6	7	10	0.642160	2.947703	chr3	107882851	107883323	LTR|ERVL|LTR16B1	-	chr3	107883204	107928907	LINC00636|NR_015394.1	+	107883204,107923630,107927872	107883306,107923800,107928907	0.700000
thyroid_gland_female_adult_51_years	chr15	63942942	63942992	63942942	-	High_confidence	236	238	417	26.778070	7.220415	chr15	63942686	63942977	LINE|L2|L2c	+	chr15	63908252	63942995	STRG.108427.6	-	63908252,63911907,63912107,63924815,63925940,63929550,63930406,63939231,63942863	63908600,63911991,63912197,63924861,63926093,63929577,63930455,63939361,63942995	0.592326
thyroid_gland_female_adult_51_years	chr12	27579290	27579369	27579305	+	RAMPAGE_only	6	6	44	2.825504	5.083128	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.659091
thyroid_gland_female_adult_51_years	chr8	91351376	91351445	91351376	+	RAMPAGE_only	3	3	29	1.862264	2.761637	chr8	91351267	91351428	LINE|RTE-BovB|MamRTE1	+	chr8	91249306	91393836	STRG.71433.4	+	91249306,91249538,91289135,91295530,91318215,91334294,91338149,91340403,91343352,91352900,91362352,91363471,91366579,91369784,91389337,91393796	91249413,91249844,91289246,91295703,91318380,91334447,91338232,91340551,91351887,91352996,91362459,91363538,91366717,91369833,91389438,91393836	1.000000
thyroid_gland_female_adult_51_years	chr5	175960318	175960337	175960336	-	RAMPAGE_only	7	7	42	2.697072	4.350069	chr5	175960190	175960347	SINE|MIR|MIR	-	chr5	175959590	175961413	THOC3|ENST00000505969.1	-	175959590,175961272	175960132,175961413	0.619048
thyroid_gland_female_adult_51_years	chr11	65382771	65382795	65382789	-	High_confidence	4	4	12	0.770592	3.277613	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.916667
thyroid_gland_female_adult_51_years	chr3	197299286	197299317	197299307	-	High_confidence	8	8	30	1.926480	4.593069	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.766667
thyroid_gland_female_adult_51_years	chr8	19682027	19682057	19682027	-	High_confidence	2	2	10	0.642160	2.721928	chr8	19682024	19682271	DNA|hAT-Tip100|MER115	+	chr8	19404160	19682583	CSGALNACT1|NM_018371.4	-	19404160,19408612,19418655,19420339,19439829,19458425,19505200,19585165,19601770,19682472	19406069,19408694,19418750,19420518,19439931,19458642,19506130,19585317,19601865,19682583	0.900000
thyroid_gland_female_adult_51_years	chr3	154089542	154089603	154089599	-	High_confidence	8	8	46	2.953936	4.345351	chr3	154089524	154089737	DNA|hAT-Charlie|MER102a	-	chr3	154024592	154089622	STRG.31114.1	-	154024592,154030276,154089328	154026642,154030379,154089622	0.543478
thyroid_gland_female_adult_51_years	chr19	10555125	10555148	10555125	-	RAMPAGE_only	4	4	8	0.513728	2.750000	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	1.000000
thyroid_gland_female_adult_51_years	chr10	53030022	53030110	53030023	-	High_confidence	140	264	650	41.740397	6.669719	chr10	53029943	53030661	LTR|ERV1|LTR30	-	chr10	53025271	53030061	STRG.81991.6	-	53025271,53029891	53026127,53030061	0.592308
thyroid_gland_female_adult_51_years	chr17	7013027	7013074	7013068	+	High_confidence	2	2	9	0.577944	2.500000	chr17	7012918	7013141	SINE|Alu|AluSx	+	chr17	7013230	7014520	RNASEK|ENST00000552321.2	+	7013230,7013665,7014144	7013516,7013742,7014520	0.666667
thyroid_gland_female_adult_51_years	chr7	99410146	99410162	99410146	+	High_confidence	4	5	12	0.770592	3.022055	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	1.000000
thyroid_gland_female_adult_51_years	chr4	81154187	81154222	81154221	-	High_confidence	3	3	9	0.577944	3.169925	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	1.000000
thyroid_gland_female_adult_51_years	chr14	23231862	23231910	23231893	+	High_confidence	10	10	43	2.761288	4.753774	chr14	23231647	23233421	Retroposon|SVA|SVA_C	+	chr14	23231856	23233380	STRG.101005.1	+	23231856,23232909	23232521,23233380	0.651163
thyroid_gland_female_adult_51_years	chr7	100082565	100082580	100082579	-	High_confidence	8	8	15	0.963240	3.640224	chr7	100082301	100082600	SINE|Alu|AluSx1	+	chr7	100069970	100082548	ZNF3|NM_001278287.1	-	100069970,100075134,100075541,100077302,100079535,100082300	100072212,100075261,100075630,100077433,100079572,100082548	0.733333
thyroid_gland_female_adult_51_years	chr1	109177636	109177655	109177636	-	High_confidence	10	10	27	1.733832	4.286790	chr1	109176604	109177644	Retroposon|SVA|SVA_D	-	chr1	109176181	109177644	STRG.6252.1	-	109176181	109177644	0.925926
thyroid_gland_female_adult_51_years	chr19	58381371	58381411	58381371	+	High_confidence	7	7	38	2.440208	4.714647	chr19	58381391	58381508	DNA|hAT-Charlie|MER5B	+	chr19	58381021	58383833	STRG.124392.1	+	58381021	58383833	0.973684
thyroid_gland_female_adult_51_years	chr17	75498237	75498258	75498237	+	High_confidence	4	4	12	0.770592	3.095795	chr17	75498201	75498275	LINE|L2|L2-1_Crp	+	chr17	75498216	75498814	TMEM94|ENST00000577194.1	+	75498216,75498443	75498323,75498814	0.666667
thyroid_gland_female_adult_51_years	chr1	196404216	196404229	196404228	-	High_confidence	4	4	9	0.577944	2.750000	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196279859	196404277	STRG.9392.4	-	196279859,196282272,196285656,196305233,196315891,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196280988,196282356,196285758,196305345,196316026,196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404277	0.777778
thyroid_gland_female_adult_51_years	chr18	49563655	49563705	49563681	+	RAMPAGE_only	5	5	20	1.284320	3.921928	chr18	49563415	49563839	LINE|L2|L2a	-	chr18	49562344	49567763	LIPG|ENST00000579750.1	+	49562344,49565316,49567441	49562405,49565498,49567763	0.700000
thyroid_gland_female_adult_51_years	chr14	80992795	80992800	80992795	+	RAMPAGE_only	2	2	7	0.449512	2.521641	chr14	80992631	80993276	LINE|CR1|L3	+	chr14	80955587	80995695	TSHR|ENST00000642209.1	+	80955587,80991540	80955850,80995695	1.000000
thyroid_gland_female_adult_51_years	chr11	44564415	44564429	44564426	+	RAMPAGE_only	4	4	17	1.091672	3.875000	chr11	44564373	44564477	SINE|MIR|MIRc	+	chr11	44565590	44620363	CD82|ENST00000227155.8	+	44565590,44587474,44594642,44600157,44605057,44605354,44615271,44618161,44618639,44619048	44565736,44587556,44594725,44600230,44605182,44605429,44615373,44618365,44618723,44620363	0.588235
thyroid_gland_female_adult_51_years	chr1	242001557	242001589	242001562	-	High_confidence	6	6	36	2.311776	4.017918	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	242001590	STRG.11753.1	-	241995489,241998513,241998775,241998950,242001308	241996385,241998620,241998831,241999026,242001590	0.944444
thyroid_gland_female_adult_51_years	chr2	46000871	46000971	46000970	+	High_confidence	3	3	16	1.027456	3.456565	chr2	46000000	46000990	LINE|L1|L1MCa	-	chr2	46000901	46010964	PRKCE|ENST00000394874.1	+	46000901,46001403,46004541,46007461,46010343,46010683	46001002,46001546,46004638,46007661,46010517,46010964	0.562500
thyroid_gland_female_adult_51_years	chr19	2983871	2983883	2983882	+	High_confidence	8	8	14	0.899024	3.039149	chr19	2983200	2983942	LINE|L2|L2a	-	chr19	2983905	2987187	TLE6|ENST00000591953.5	+	2983905,2986828,2986982	2984219,2986891,2987187	0.928571
thyroid_gland_female_adult_51_years	chr19	20247570	20247607	20247570	+	High_confidence	114	130	368	23.631486	6.876853	chr19	20246144	20248488	LTR|ERV1|HERVE_a-int	+	chr19	20247569	20259360	STRG.122316.1	+	20247569,20247811,20248281,20249057,20250200,20257226,20257642	20247699,20247956,20248447,20249184,20250295,20257430,20259360	0.706522
thyroid_gland_female_adult_51_years	chr19	41545191	41545192	41545191	+	RAMPAGE_only	35	35	35	2.247560	4.514718	chr19	41544577	41545607	LTR|ERVK|LTR5A	+	chr19	41549517	41586844	CEACAM21|NM_001288773.2	+	41549517,41564681,41577199,41579269,41584346,41585442,41585839,41586463	41549552,41565056,41577559,41579628,41584443,41585495,41585871,41586844	0.542857
thyroid_gland_female_adult_51_years	chr2	229232040	229232054	229232053	-	High_confidence	21	21	43	2.761288	4.772186	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.860465
thyroid_gland_female_adult_51_years	chr8	102930135	102930183	102930162	+	High_confidence	8	9	38	2.440208	4.787144	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.789474
thyroid_gland_female_adult_51_years	chr20	37298760	37298761	37298760	+	RAMPAGE_only	10	12	12	0.770592	3.251629	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
thyroid_gland_female_adult_51_years	chr1	33021454	33021456	33021455	-	High_confidence	6	10	15	0.963240	3.456565	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010518	33021690	STRG.1498.5	-	33010518,33014521,33021366,33021592	33013402,33014594,33021461,33021690	1.000000
thyroid_gland_female_adult_51_years	chr15	65244453	65244455	65244454	-	RAMPAGE_only	6	10	11	0.706376	2.921928	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234371	65248195	STRG.108536.1	-	65234371,65248116	65234823,65248195	0.909091
thyroid_gland_female_adult_51_years	chr4	141332616	141332617	141332616	-	High_confidence	477	482	527	33.841830	4.848070	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.944972
thyroid_gland_female_adult_51_years	chr10	79446868	79446869	79446868	-	RAMPAGE_only	17	17	22	1.412752	2.732159	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.954545
thyroid_gland_female_adult_51_years	chr19	20409301	20409317	20409309	-	High_confidence	9	15	32	2.054912	4.506891	chr19	20409218	20409462	SINE|Alu|AluSp	-	chr19	20397333	20409959	ZNF826P|ENST00000622273.1	-	20397333,20408949,20409829	20399038,20409024,20409959	0.562500
thyroid_gland_female_adult_51_years	chr2	107529409	107529416	107529409	+	High_confidence	7	8	16	1.027456	3.750000	chr2	107529145	107529729	LTR|ERV1|LTR9	-	chr2	107529486	107533846	STRG.17091.3	+	107529486	107533846	1.000000
thyroid_gland_female_adult_51_years	chr7	87039797	87039828	87039797	-	High_confidence	3	3	11	0.706376	3.321928	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86897477	87040682	STRG.63814.5	-	86897477,86907669,86908446,86909811,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86897632,86907771,86908565,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040682	0.727273
thyroid_gland_female_adult_51_years	chr6	169628319	169628357	169628324	+	RAMPAGE_only	4	4	14	0.899024	3.546594	chr6	169628013	169628366	LTR|ERVL-MaLR|MLT1A0	+	chr6	169631079	169631545	STRG.59645.1	+	169631079	169631545	0.642857
thyroid_gland_female_adult_51_years	chr19	38289169	38289181	38289169	+	High_confidence	2	3	9	0.577944	2.750000	chr19	38289206	38289513	SINE|Alu|AluSc8	+	chr19	38288405	38292468	SPINT2|ENST00000585357.1	+	38288405,38290536	38290280,38292468	0.888889
thyroid_gland_female_adult_51_years	chr12	80778361	80778416	80778361	+	High_confidence	20	22	47	3.018152	4.807367	chr12	80778022	80778485	LTR|ERVL-MaLR|MLT1H	+	chr12	80778349	80782879	STRG.95591.1	+	80778349,80781440	80779045,80782879	0.808511
thyroid_gland_female_adult_51_years	chr21	45370864	45370948	45370947	+	High_confidence	10	10	69	4.430904	5.517538	chr21	45370573	45371212	LTR|ERVL-MaLR|MLT1E2	+	chr21	45370813	45372141	STRG.129448.1	+	45370813,45371858	45371243,45372141	0.739130
thyroid_gland_female_adult_51_years	chr10	45000503	45000514	45000503	+	High_confidence	4	4	13	0.834808	2.918296	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.923077
thyroid_gland_female_adult_51_years	chr3	80770347	80770393	80770375	-	High_confidence	11	11	85	5.458360	5.627580	chr3	80769735	80770387	LTR|ERV1|LTR1A1	-	chr3	80761532	80770219	STRG.28173.1	-	80761532,80769758	80761573,80770219	0.529412
thyroid_gland_female_adult_51_years	chr3	50790186	50790201	50790200	+	RAMPAGE_only	3	3	8	0.513728	2.750000	chr3	50790032	50790807	LINE|L1|L1PB1	-	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.750000
thyroid_gland_female_adult_51_years	chr3	16228411	16228448	16228447	+	RAMPAGE_only	3	3	11	0.706376	2.646439	chr3	16228359	16228663	SINE|Alu|AluSx	+	chr3	16219399	16229745	GALNT15|ENST00000617544.3	+	16219399,16219909,16222614,16227353,16227444	16219534,16220014,16222758,16227443,16229745	0.909091
thyroid_gland_female_adult_51_years	chr5	14653390	14653391	14653390	-	High_confidence	39	39	39	2.504424	4.259351	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	1.000000
thyroid_gland_female_adult_51_years	chr2	221501623	221501637	221501636	-	High_confidence	5	5	11	0.706376	3.321928	chr2	221501442	221501654	SINE|MIR|MIRb	-	chr2	221481436	221501616	STRG.22373.9	-	221481436,221501016,221501536	221482690,221501172,221501616	0.727273
thyroid_gland_female_adult_51_years	chrX	153463082	153463094	153463082	-	RAMPAGE_only	7	7	21	1.348536	3.884184	chrX	153463046	153463145	SINE|MIR|MIRb	-	chrX	153447669	153457191	HAUS7|ENST00000484394.5	-	153447669,153454393,153456264,153456492,153457136	153447909,153455766,153456364,153456651,153457191	0.857143
thyroid_gland_female_adult_51_years	chr4	173369526	173369553	173369533	-	High_confidence	3	3	11	0.706376	3.121928	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.545455
thyroid_gland_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	94	94	94	6.036304	3.576308	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.989362
thyroid_gland_female_adult_51_years	chr20	63617318	63617343	63617342	+	High_confidence	3	3	11	0.706376	2.721928	chr20	63617275	63617500	LTR|ERVL-MaLR|MLT1A	+	chr20	63617367	63619476	STRG.127509.1	+	63617367	63619476	0.909091
thyroid_gland_female_adult_51_years	chr20	35315140	35315141	35315140	-	RAMPAGE_only	5	5	7	0.449512	2.584963	chr20	35315017	35315328	LINE|L2|L2c	-	chr20	35303452	35394203	UQCC1|ENST00000397556.7	-	35303452,35306665,35314687,35347163,35366556,35381925,35384037,35394091	35304069,35306779,35314765,35347272,35366614,35382025,35384133,35394203	0.571429
thyroid_gland_female_adult_51_years	chr5	172854678	172854703	172854702	+	RAMPAGE_only	5	6	19	1.220104	3.787144	chr5	172854401	172854991	DNA|TcMar-Tigger|MER6A	+	chr5	172834274	172952685	ERGIC1|ENST00000393784.7	+	172834274,172888698,172897001,172909666,172914713,172924004,172926508,172932435,172935187,172950708	172834433,172888760,172897074,172909761,172914838,172924109,172926569,172932536,172935310,172952685	0.842105
thyroid_gland_female_adult_51_years	chr19	49086475	49086547	49086520	+	High_confidence	5	5	26	1.669616	4.056021	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.923077
thyroid_gland_female_adult_51_years	chr6	28335904	28335940	28335904	-	High_confidence	7	7	23	1.476968	3.732159	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.913043
thyroid_gland_female_adult_51_years	chrX	115647922	115647980	115647972	+	RAMPAGE_only	5	5	35	2.247560	4.675698	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.971429
thyroid_gland_female_adult_51_years	chr19	2545998	2546035	2545998	+	High_confidence	7	7	36	2.311776	4.382021	chr19	2545987	2545998	SINE|Alu|AluSx1	+	chr19	2546211	2547954	STRG.120962.1	+	2546211	2547954	0.916667
thyroid_gland_female_adult_51_years	chr2	96303166	96303200	96303166	-	RAMPAGE_only	3	3	11	0.706376	3.121928	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.909091
thyroid_gland_female_adult_51_years	chr3	187021850	187021852	187021850	+	High_confidence	66	110	138	8.861807	4.906362	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.963768
thyroid_gland_female_adult_51_years	chr15	26831541	26831557	26831552	+	RAMPAGE_only	3	3	12	0.770592	3.095795	chr15	26830154	26831744	LTR|ERV1|LTR12C	-	chr15	26866362	26949207	GABRA5|ENST00000335625.9	+	26866362,26868728,26869174,26880845,26883165,26883336,26914802,26937184,26939924,26943214,26947933	26867111,26868793,26869334,26880967,26883233,26883557,26914885,26937328,26940077,26943426,26949207	0.833333
thyroid_gland_female_adult_51_years	chr5	79471002	79471003	79471002	-	RAMPAGE_only	8	8	11	0.706376	3.121928	chr5	79470946	79471011	LINE|L2|L2a	+	chr5	79375929	79512794	HOMER1|ENST00000508576.5	-	79375929,79439009,79447052,79450989,79456861,79512769	79376197,79439149,79447145,79451121,79457018,79512794	0.636364
thyroid_gland_female_adult_51_years	chr4	41359606	41359607	41359606	+	High_confidence	8	8	8	0.513728	2.500000	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.875000
thyroid_gland_female_adult_51_years	chr1	156252930	156252931	156252930	-	High_confidence	4	5	7	0.449512	2.807355	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.571429
thyroid_gland_female_adult_51_years	chr12	28825945	28825962	28825947	-	High_confidence	11	21	33	2.119128	4.125000	chr12	28825676	28826170	LTR|ERVL|MLT2B3	-	chr12	28821974	28825831	AC022081.1|ENST00000537327.1	-	28821974,28825697	28822273,28825831	0.939394
thyroid_gland_female_adult_51_years	chr7	88890550	88890562	88890561	+	RAMPAGE_only	4	4	8	0.513728	2.500000	chr7	88890315	88890835	LINE|L1|L1ME3D	-	chr7	88877077	88967921	STRG.64116.6	+	88877077,88925182	88925158,88967921	1.000000
thyroid_gland_female_adult_51_years	chr6	79631404	79631468	79631441	+	High_confidence	6	6	37	2.375992	4.411892	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
thyroid_gland_female_adult_51_years	chr8	143018394	143018434	143018394	-	High_confidence	4	4	22	1.412752	4.061482	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.681818
thyroid_gland_female_adult_51_years	chr12	120292781	120292806	120292805	-	High_confidence	6	7	10	0.642160	2.921928	chr12	120292741	120292816	SINE|Alu|AluYe5	+	chr12	120292277	120292571	STRG.97576.1	-	120292277	120292571	0.600000
thyroid_gland_female_adult_51_years	chr6	156310926	156310956	156310940	+	High_confidence	40	45	115	7.384840	5.963940	chr6	156310778	156311273	LINE|L2|L2a	-	chr6	156310921	156352490	STRG.59044.1	+	156310921,156350520,156351850	156311760,156350710,156352490	0.721739
thyroid_gland_female_adult_51_years	chr4	79492592	79492616	79492595	+	High_confidence	3	3	9	0.577944	2.503258	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492593	79493781	STRG.37050.3	+	79492593,79493151	79492774,79493781	0.666667
thyroid_gland_female_adult_51_years	chr11	57425751	57425784	57425778	-	High_confidence	8	8	27	1.733832	4.056021	chr11	57425746	57425858	LINE|CR1|L3	-	chr11	57417879	57425856	SLC43A3|ENST00000529113.5	-	57417879,57420971,57421296,57423981,57425540	57417887,57421064,57421373,57424028,57425856	0.666667
thyroid_gland_female_adult_51_years	chr6	89638799	89638829	89638823	+	High_confidence	12	12	49	3.146584	3.052656	chr6	89638870	89638965	SINE|MIR|MIRb	+	chr6	89638731	89639467	STRG.55355.1	+	89638731	89639467	0.959184
thyroid_gland_female_adult_51_years	chr6	170410197	170410251	170410248	-	High_confidence	10	11	47	3.018152	4.969002	chr6	170410161	170410365	LINE|L1|L1M4c	+	chr6	170403528	170410265	STRG.59753.1	-	170403528,170410158	170407712,170410265	0.936170
thyroid_gland_female_adult_51_years	chr8	108948904	108948909	108948904	-	RAMPAGE_only	2	2	6	0.385296	2.584963	chr8	108948659	108949043	LINE|L2|L2b	+	chr8	108908216	108918613	AC104248.1|ENST00000524134.1	-	108908216,108910625,108910921,108916046,108918536	108908271,108910734,108911121,108916091,108918613	0.500000
thyroid_gland_female_adult_51_years	chr2	159996687	159996721	159996720	-	RAMPAGE_only	5	5	17	1.091672	3.500000	chr2	159995925	159997907	LINE|L1|L1MCa	-	chr2	159932005	160062610	STRG.19233.8	-	159932005,159942126,159944905,159946800,159947418,159949607,159955198,159955697,159956509,159967538,159969255,159970147,159976067,159976684,159977283,159979829,159983927,159987155,159996107,159999663,160005651,160013262,160016613,160020105,160022664,160028217,160028849,160032958,160042024,160044773,160062294	159941992,159942159,159945082,159946917,159947559,159951578,159955346,159955828,159956627,159967678,159969359,159970212,159976225,159976720,159977416,159979914,159984073,159987358,159999340,160004866,160005821,160013375,160016712,160020263,160022859,160028361,160028963,160033132,160042198,160045157,160062610	0.941176
thyroid_gland_female_adult_51_years	chr7	102822458	102822461	102822458	-	RAMPAGE_only	8	10	16	1.027456	3.456565	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.812500
thyroid_gland_female_adult_51_years	chr9	92536703	92536704	92536703	-	High_confidence	4	4	6	0.385296	2.584963	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	1.000000
thyroid_gland_female_adult_51_years	chr3	101692171	101692188	101692171	+	RAMPAGE_only	11	13	19	1.220104	3.536887	chr3	101691892	101692861	LTR|ERVK|LTR5_Hs	+	chr3	101676474	101705477	STRG.28732.3	+	101676474,101685848	101677272,101705477	1.000000
thyroid_gland_female_adult_51_years	chr2	24328540	24328572	24328540	-	High_confidence	23	24	95	6.100520	5.236480	chr2	24328467	24328762	SINE|Alu|AluSz6	-	chr2	24202866	24328118	ITSN2|ENST00000622089.4	-	24202866,24204244,24205213,24208236,24209099,24209817,24210779,24212649,24216048,24217906,24220944,24246128,24246796,24248628,24248836,24252344,24254366,24257887,24261105,24261560,24270670,24271765,24275712,24286211,24293687,24295663,24298664,24299908,24301153,24301964,24303798,24308616,24310283,24310488,24312211,24313459,24315131,24328051,24328103	24203783,24204418,24205297,24208319,24209221,24210033,24210947,24212748,24216232,24218013,24221066,24246320,24246893,24248750,24248882,24252511,24254431,24258093,24261250,24261742,24270768,24271941,24275849,24286351,24293775,24295804,24298814,24300171,24301239,24302102,24303862,24308756,24310380,24310692,24312375,24313523,24315224,24328100,24328118	0.852632
thyroid_gland_female_adult_51_years	chr1	6820195	6820201	6820197	+	RAMPAGE_only	7	10	16	1.027456	2.739572	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.687500
thyroid_gland_female_adult_51_years	chr3	195688693	195688725	195688693	+	High_confidence	3	3	13	0.834808	2.918296	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688681	195708807	MUC20-OT1|ENST00000627562.2	+	195688681,195689338,195699029,195701379,195708133	195688797,195689438,195699207,195701495,195708807	0.615385
thyroid_gland_female_adult_51_years	chr9	39810023	39810094	39810033	-	High_confidence	42	42	120	7.705920	5.796596	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.583333
thyroid_gland_female_adult_51_years	chr11	78081872	78081882	78081881	-	RAMPAGE_only	7	7	19	1.220104	2.969389	chr11	78081299	78085065	LTR|ERV1|HERVH-int	+	chr11	78068303	78080219	NDUFC2|ENST00000281031.4	-	78068303,78072997,78079578	78070036,78073141,78080219	0.894737
thyroid_gland_female_adult_51_years	chr19	15256176	15256207	15256203	-	RAMPAGE_only	2	2	10	0.642160	2.503258	chr19	15256082	15256220	LINE|L1|L1M5	-	chr19	15235527	15272981	STRG.121422.1	-	15235527,15238742,15239058,15239391,15239658,15239909,15242899,15244230,15244709,15254151,15255296,15256063,15256963,15263419,15264403,15265353,15267415,15268904,15272814	15238445,15238980,15239264,15239522,15239821,15240022,15243487,15244600,15244762,15254262,15255592,15256263,15257173,15263548,15264766,15265643,15267551,15269042,15272981	0.700000
thyroid_gland_female_adult_51_years	chr21	42350309	42350339	42350338	-	High_confidence	5	5	21	1.348536	3.441446	chr21	42350245	42350552	SINE|Alu|AluJb	+	chr21	42346421	42350994	TFF2|ENST00000475297.1	-	42346421,42347485,42349880,42350266,42350878	42346546,42347632,42350030,42350359,42350994	0.714286
thyroid_gland_female_adult_51_years	chr3	32167049	32167070	32167069	+	RAMPAGE_only	4	4	8	0.513728	2.750000	chr3	32166945	32167073	DNA|hAT-Charlie|MER5A	+	chr3	32158333	32168706	GPD1L|ENST00000474846.5	+	32158333,32159567,32165813	32159109,32159674,32168706	1.000000
thyroid_gland_female_adult_51_years	chr9	13386132	13386133	13386132	+	RAMPAGE_only	14	14	15	0.963240	2.896292	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.933333
thyroid_gland_female_adult_51_years	chr1	39526541	39526603	39526541	+	RAMPAGE_only	25	35	80	5.137280	4.261301	chr1	39526339	39526637	SINE|Alu|AluSx1	-	chr1	39491645	39529869	BMP8A|NM_181809.3	+	39491645,39511173,39511755,39521375,39522402,39523006,39525648	39492325,39511363,39511904,39521570,39522482,39523117,39529869	0.962500
thyroid_gland_female_adult_51_years	chr15	24919743	24919750	24919749	+	High_confidence	5	5	9	0.577944	3.000000	chr15	24919446	24919852	LTR|ERV1|MER31A	-	chr15	24919550	24977850	STRG.105985.9	+	24919550,24962113,24967931,24974310,24975357,24976304,24976876,24977777	24920124,24962209,24968082,24974456,24975509,24976416,24977029,24977850	0.555556
thyroid_gland_female_adult_51_years	chr9	132263267	132263285	132263282	-	RAMPAGE_only	5	5	13	0.834808	2.815072	chr9	132263232	132263299	DNA|hAT-Charlie|MER5A	-	chr9	132261355	132275382	SETX|ENST00000477049.1	-	132261355,132266126,132269614,132271709,132275255	132264985,132266249,132269702,132271808,132275382	1.000000
thyroid_gland_female_adult_51_years	chr8	143281669	143281687	143281686	-	High_confidence	26	30	95	6.100520	5.263769	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143281069	143281665	MINCR|ENST00000524335.1	-	143281069,143281481	143281384,143281665	0.515789
thyroid_gland_female_adult_51_years	chr20	35732439	35732446	35732439	-	High_confidence	3	3	10	0.642160	2.641604	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.900000
thyroid_gland_female_adult_51_years	chr9	94144662	94144663	94144662	+	RAMPAGE_only	4	4	6	0.385296	2.584963	chr9	94144621	94144952	LTR|ERVL-MaLR|MLT1L	-	chr9	94145800	94149036	STRG.77360.1	+	94145800	94149036	0.666667
thyroid_gland_female_adult_51_years	chr2	168857061	168857062	168857061	+	High_confidence	7	7	9	0.577944	2.500000	chr2	168857092	168857289	SINE|MIR|MIRb	+	chr2	168857081	168857433	STRG.19402.1	+	168857081	168857433	0.555556
thyroid_gland_female_adult_51_years	chr17	82081601	82081623	82081601	-	High_confidence	2	2	8	0.513728	2.807355	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.625000
thyroid_gland_female_adult_51_years	chr19	35899347	35899371	35899347	+	RAMPAGE_only	5	6	13	0.834808	2.625815	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35902479	35904271	HCST|NM_014266.3	+	35902479,35903350,35903771,35904119	35902636,35903416,35903903,35904271	0.923077
thyroid_gland_female_adult_51_years	chr15	89133485	89133490	89133485	+	RAMPAGE_only	2	3	6	0.385296	2.584963	chr15	89133190	89133834	LINE|L1|L1MC5	-	chr15	89116503	89183373	ABHD2|ENST00000562073.1	+	89116503,89151676,89155366,89175811,89183331	89116521,89151852,89155534,89175995,89183373	0.833333
thyroid_gland_female_adult_51_years	chr11	65427940	65428515	65428514	+	RAMPAGE_only	37	63	571	36.667334	6.637772	chr11	65428531	65428593	DNA|hAT-Tip100|MamRep4096	+	chr11	65423637	65437172	STRG.88982.8	+	65423637,65433874	65433520,65437172	1.000000
thyroid_gland_female_adult_51_years	chr10	109953884	109953910	109953909	-	RAMPAGE_only	6	6	16	1.027456	3.456565	chr10	109953667	109954091	LTR|ERVL-MaLR|MLT1J2	-	chr10	109950136	110008604	STRG.84752.22	-	109950136,109953755,110005956,110008526	109950458,109953891,110006081,110008604	0.687500
thyroid_gland_female_adult_51_years	chr6	155214185	155214213	155214210	+	RAMPAGE_only	7	12	34	2.183344	4.393062	chr6	155212598	155214287	LTR|ERV1|MER52A	-	chr6	155216636	155257220	TIAM2|ENST00000275246.11	+	155216636,155240529,155244010,155244657,155245622,155247999,155249850,155250912,155251944,155252947,155253972,155254418,155256483	155217090,155240709,155244079,155244783,155245731,155248179,155249969,155251021,155252003,155253053,155254060,155254573,155257220	0.529412
thyroid_gland_female_adult_51_years	chr21	42524975	42524978	42524975	+	RAMPAGE_only	4	4	11	0.706376	3.095795	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42513913	42581440	SLC37A1|ENST00000352133.2	+	42513913,42518276,42525775,42534697,42535471,42539511,42542403,42543435,42547102,42554061,42558957,42562077,42563814,42564707,42565826,42566984,42568359,42574817,42579735,42580344	42514717,42518510,42525857,42534830,42535550,42539647,42542480,42543602,42547140,42554142,42559089,42562168,42563877,42564793,42565875,42567058,42568438,42574915,42579800,42581440	0.545455
thyroid_gland_female_adult_51_years	chr11	67848662	67848702	67848701	-	High_confidence	19	19	89	5.715224	4.502314	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67845212	67848697	STRG.89213.1	-	67845212,67848565	67847989,67848697	0.932584
thyroid_gland_female_adult_51_years	chr8	102929989	102930010	102929989	+	High_confidence	5	5	11	0.706376	2.846439	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.909091
thyroid_gland_female_adult_51_years	chr8	11795578	11795579	11795578	+	High_confidence	38	38	40	2.568640	4.649115	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.950000
thyroid_gland_female_adult_51_years	chr8	18063197	18063216	18063197	-	High_confidence	17	17	70	4.495120	5.272509	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
thyroid_gland_female_adult_51_years	chr3	57267742	57267787	57267772	+	RAMPAGE_only	4	4	16	1.027456	3.506891	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.875000
thyroid_gland_female_adult_51_years	chr21	36980868	36980987	36980986	-	High_confidence	12	13	77	4.944632	5.090120	chr21	36980978	36981177	LINE|L2|L2b	+	chr21	36937184	36980964	STRG.128954.5	-	36937184,36938831,36947332,36962035,36980640	36937392,36938994,36948287,36962170,36980964	0.974026
thyroid_gland_female_adult_51_years	chrX	73825084	73825120	73825119	-	RAMPAGE_only	3	3	10	0.642160	2.646439	chrX	73825100	73825142	LINE|L2|L2b	+	chrX	73820766	73829127	STRG.135054.14	-	73820766,73824281,73829067	73824222,73827984,73829127	1.000000
thyroid_gland_female_adult_51_years	chr12	53464763	53464816	53464815	+	RAMPAGE_only	6	6	30	1.926480	4.211261	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479614	STRG.94673.13	+	53462513,53464759,53465931,53467220,53468776,53471637,53479405	53462567,53464852,53465973,53467843,53468832,53471807,53479614	0.900000
thyroid_gland_female_adult_51_years	chr14	92733091	92733122	92733091	-	RAMPAGE_only	2	2	10	0.642160	2.947703	chr14	92732868	92733169	SINE|Alu|AluSg	+	chr14	92703846	92748603	LGMN|ENST00000557609.5	-	92703846,92704639,92706482,92709671,92711658,92711836,92712804,92713822,92714375,92717379,92718746,92732648,92748488	92704361,92704707,92706653,92709872,92711748,92711955,92712871,92713885,92714451,92717461,92718844,92732815,92748603	0.500000
thyroid_gland_female_adult_51_years	chr6	91476210	91476216	91476210	+	High_confidence	454	483	716	45.978653	4.616228	chr6	91475986	91476298	LTR|ERVL-MaLR|MLT1N2	-	chr6	91476223	91489959	STRG.55473.1	+	91476223	91489959	0.981844
thyroid_gland_female_adult_51_years	chr3	194486575	194486632	194486612	-	High_confidence	5	5	25	1.605400	4.053509	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194402673	194487002	ATP13A3|ENST00000645538.1	-	194402673,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194487002	0.880000
thyroid_gland_female_adult_51_years	chr2	185425017	185425076	185425017	+	High_confidence	9	9	26	1.669616	4.085055	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185425111	185434689	STRG.20182.1	+	185425111,185434096	185425507,185434689	0.653846
thyroid_gland_female_adult_51_years	chr7	107847797	107847845	107847797	+	High_confidence	2	2	15	0.963240	3.128085	chr7	107847518	107849053	Retroposon|SVA|SVA_C	+	chr7	107847629	107848411	STRG.65353.1	+	107847629	107848411	0.533333
thyroid_gland_female_adult_51_years	chr3	43490931	43490974	43490973	-	High_confidence	6	6	21	1.348536	3.921928	chr3	43490741	43491230	LTR|ERV1|MER50	+	chr3	43366358	43491706	STRG.26108.6	-	43366358,43432610,43490683	43366974,43432727,43491706	0.857143
thyroid_gland_female_adult_51_years	chr9	128921399	128921400	128921399	+	High_confidence	8	8	12	0.770592	3.459432	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.833333
thyroid_gland_female_adult_51_years	chr2	41708134	41708156	41708155	-	High_confidence	34	34	97	6.228952	5.369079	chr2	41707760	41708133	LTR|ERVL-MaLR|MLT1B	-	chr2	40960594	41708200	STRG.14280.1	-	40960594,40970208,41166462,41418927,41707834	40960945,40970263,41166555,41419041,41708200	0.546392
thyroid_gland_female_adult_51_years	chr8	80485592	80485619	80485592	+	High_confidence	16	16	29	1.862264	4.521641	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.689655
thyroid_gland_female_adult_51_years	chr19	7642274	7642295	7642274	+	High_confidence	5	5	15	0.963240	3.106891	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7647455	STRG.121166.6	+	7642245,7642428,7642765,7642982,7643164,7644613,7645196,7646248,7647161	7642333,7642536,7642823,7643048,7643245,7644752,7645306,7646344,7647455	1.000000
thyroid_gland_female_adult_51_years	chr19	40280802	40280832	40280831	-	High_confidence	4	4	16	1.027456	2.973557	chr19	40280545	40281038	LINE|L2|L2a	+	chr19	40242039	40280832	AKT2|ENST00000486368.6	-	40242039,40242533,40255157,40256925,40265221,40280781	40242069,40242687,40255269,40257054,40265351,40280832	0.625000
thyroid_gland_female_adult_51_years	chr4	86453161	86453207	86453161	-	High_confidence	4	4	39	2.504424	4.663231	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86159297	86453162	MAPK10|ENST00000642049.1	-	86159297,86194318,86354529,86370713,86453029	86159467,86194407,86354644,86370867,86453162	0.717949
thyroid_gland_female_adult_51_years	chr2	86063806	86063808	86063807	-	RAMPAGE_only	5	7	9	0.577944	2.500000	chr2	86063770	86064077	LINE|L1|L1M5	-	chr2	86020215	86106155	POLR1A|ENST00000263857.10	-	86020215,86027884,86028593,86030195,86031329,86032271,86033660,86038699,86039326,86040391,86041888,86042973,86044138,86045277,86045616,86047164,86048883,86049159,86052816,86054139,86065273,86070017,86075029,86077858,86078113,86080815,86081600,86083081,86088565,86088784,86089821,86098610,86099967,86105699	86027523,86028049,86028711,86030396,86031635,86032382,86033787,86038857,86039462,86040559,86042103,86043195,86044304,86045360,86045769,86047263,86049042,86049242,86053000,86054289,86065465,86070272,86075260,86077981,86078284,86080978,86081706,86083168,86088669,86088870,86089929,86098760,86100172,86106155	0.888889
thyroid_gland_female_adult_51_years	chr19	9140393	9140428	9140393	+	High_confidence	16	16	74	4.751984	5.600516	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9161433	STRG.121136.3	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9158075,9158908,9161433	0.594595
thyroid_gland_female_adult_51_years	chr1	25796698	25796700	25796698	-	High_confidence	4	7	10	0.642160	2.947703	chr1	25796270	25796730	LINE|L2|L2b	+	chr1	25796271	25796510	STRG.1232.1	-	25796271	25796510	0.800000
thyroid_gland_female_adult_51_years	chr8	102925026	102925046	102925045	+	RAMPAGE_only	3	3	8	0.513728	3.000000	chr8	102925075	102925163	DNA|hAT-Charlie|MER5B	+	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.500000
thyroid_gland_female_adult_51_years	chr6	28985669	28985686	28985669	+	High_confidence	2	3	8	0.513728	2.500000	chr6	28985713	28985796	SINE|Alu|AluJo	+	chr6	28986202	28987484	HCG15|ENST00000438190.1	+	28986202,28986312,28986676	28986232,28986506,28987484	0.875000
thyroid_gland_female_adult_51_years	chr10	32446977	32446988	32446977	+	High_confidence	13	14	25	1.605400	4.001629	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.920000
thyroid_gland_female_adult_51_years	chr2	201139251	201139329	201139251	+	RAMPAGE_only	2	2	20	1.284320	3.484184	chr2	201139001	201139967	LTR|ERVK|LTR5_Hs	+	chr2	201116406	201139877	CFLAR|ENST00000395148.6	+	201116406,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.850000
thyroid_gland_female_adult_51_years	chr13	24968346	24968472	24968346	-	High_confidence	117	135	400	25.686398	7.281798	chr13	24967953	24968364	LINE|L1|L1PA15-16	+	chr13	24885289	24968453	STRG.98235.3	-	24885289,24889315,24892642,24899418,24903925,24905345,24907090,24908017,24909789,24911945,24912581,24924823,24925847,24933494,24937576,24951396,24954776,24961748,24962277,24967391	24885670,24889400,24892867,24899584,24904058,24906960,24907193,24908126,24910086,24912069,24913091,24924875,24925894,24933536,24943021,24951770,24954869,24961849,24965580,24968453	0.790000
thyroid_gland_female_adult_51_years	chr4	158172987	158173025	158173024	-	High_confidence	22	23	43	2.761288	4.434184	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.883721
thyroid_gland_female_adult_51_years	chr1	228103435	228103471	228103470	+	High_confidence	4	4	12	0.770592	3.022055	chr1	228103518	228103807	SINE|Alu|AluSz	+	chr1	228103696	228104671	STRG.11068.1	+	228103696	228104671	0.916667
thyroid_gland_female_adult_51_years	chr2	1552379	1552399	1552379	+	High_confidence	3	3	7	0.449512	2.521641	chr2	1552132	1552593	LTR|ERV1|LTR24	-	chr2	1552444	1554701	AC141930.2|ENST00000640435.1	+	1552444,1552737,1554169	1552554,1552857,1554701	0.857143
thyroid_gland_female_adult_51_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	70	70	71	4.559336	5.411216	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.619718
thyroid_gland_female_adult_51_years	chr11	61249402	61249440	61249439	+	High_confidence	17	18	79	5.073064	4.842869	chr11	61249400	61249513	LINE|L2|L2a	+	chr11	61249332	61251418	PGA5|ENST00000541528.1	+	61249332,61249915,61251131	61249813,61250014,61251418	0.632911
thyroid_gland_female_adult_51_years	chr3	187024677	187024683	187024677	+	High_confidence	7	7	21	1.348536	3.471354	chr3	187024583	187024927	LINE|L1|L1MC5a	+	chr3	187025478	187043084	ST6GAL1|ENST00000423451.5	+	187025478,187038741,187042653	187025517,187038873,187043084	0.857143
thyroid_gland_female_adult_51_years	chr10	17181946	17181962	17181961	-	RAMPAGE_only	6	6	16	1.027456	3.373557	chr10	17181841	17182407	LTR|ERVL-MaLR|MLT1K	+	chr10	17151413	17169419	TRDMT1|ENST00000452380.6	-	17151413,17153506,17154676,17157440,17159145,17160304,17161482,17162165,17168840,17169309	17152099,17153636,17154734,17157784,17159229,17160374,17161548,17162237,17168917,17169419	0.687500
thyroid_gland_female_adult_51_years	chr9	20658553	20658608	20658607	+	High_confidence	13	18	48	3.082368	4.332070	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658318	20770112	STRG.74469.6	+	20658318,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.750000
thyroid_gland_female_adult_51_years	chr1	51403428	51403484	51403432	-	RAMPAGE_only	4	4	13	0.834808	3.188722	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.769231
thyroid_gland_female_adult_51_years	chr12	12927723	12927751	12927733	+	High_confidence	33	35	80	5.137280	5.616886	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.575000
thyroid_gland_female_adult_51_years	chr7	134527596	134527597	134527596	+	High_confidence	8	8	8	0.513728	2.500000	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.750000
thyroid_gland_female_adult_51_years	chr1	174161437	174161465	174161464	+	RAMPAGE_only	3	3	14	0.899024	3.700440	chr1	174161256	174161539	SINE|Alu|AluSp	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.928571
thyroid_gland_female_adult_51_years	chr18	46087012	46087061	46087012	-	High_confidence	2	2	14	0.899024	3.238901	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.785714
thyroid_gland_female_adult_51_years	chr9	18702070	18702071	18702070	-	High_confidence	12	13	17	1.091672	3.454822	chr9	18701896	18702263	LTR|ERVL-MaLR|THE1B	-	chr9	18657110	18702050	STRG.74332.1	-	18657110,18670172,18694347,18701979	18657739,18670287,18694419,18702050	0.764706
thyroid_gland_female_adult_51_years	chr6	150398770	150399038	150399037	+	RAMPAGE_only	12	13	172	11.045151	5.823225	chr6	150398759	150399060	SINE|Alu|AluSx	+	chr6	150368891	150405969	IYD|ENST00000344419.7	+	150368891,150389351,150392344,150394098,150398054	150369209,150389543,150392504,150394255,150405969	1.000000
thyroid_gland_female_adult_51_years	chr6	79631273	79631329	79631302	+	High_confidence	173	173	594	38.144302	6.817213	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.986532
thyroid_gland_female_adult_51_years	chr6	31587195	31587196	31587195	+	High_confidence	5	5	7	0.449512	2.807355	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	1.000000
thyroid_gland_female_adult_51_years	chr9	39809852	39809865	39809858	-	High_confidence	14	19	45	2.889720	4.470205	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39801558	39810063	STRG.75463.2	-	39801558,39809485,39809730	39803859,39809615,39810063	0.911111
thyroid_gland_female_adult_51_years	chr11	108923686	108923718	108923686	+	RAMPAGE_only	4	4	25	1.605400	3.438722	chr11	108923524	108923886	LINE|L2|L2c	-	chr11	108929518	108940925	DDX10|ENST00000534221.1	+	108929518,108940245	108929708,108940925	0.960000
thyroid_gland_female_adult_51_years	chr3	46163733	46163741	46163733	+	High_confidence	2	3	8	0.513728	2.521641	chr3	46161736	46164342	LINE|L1|L1PA12	-	chr3	46163604	46189521	STRG.26317.1	+	46163604,46188931	46163862,46189521	0.500000
thyroid_gland_female_adult_51_years	chr7	45192594	45192605	45192594	-	High_confidence	31	31	50	3.210800	4.498172	chr7	45192444	45192721	LTR|ERV1|LOR1a	-	chr7	45192275	45192615	STRG.62447.1	-	45192275	45192615	0.680000
thyroid_gland_female_adult_51_years	chr1	76699753	76699755	76699753	+	High_confidence	6	12	15	0.963240	3.640224	chr1	76699712	76699753	LINE|L1|L1MA8	+	chr1	76699788	76700538	TPI1P1|ENST00000420977.1	+	76699788	76700538	0.933333
thyroid_gland_female_adult_51_years	chr7	134549156	134549185	134549164	+	High_confidence	3	3	12	0.770592	3.277613	chr7	134549070	134551552	LTR|ERV1|HERVS71-int	+	chr7	134549135	134579875	AKR1B15|ENST00000457545.6	+	134549135,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579875	0.583333
thyroid_gland_female_adult_51_years	chr11	74328053	74328125	74328074	+	High_confidence	14	14	79	5.073064	5.456823	chr11	74327828	74329146	Retroposon|SVA|SVA_B	+	chr11	74328024	74371071	STRG.89426.1	+	74328024,74329344,74368064	74328472,74329488,74371071	0.784810
thyroid_gland_female_adult_51_years	chr1	238486008	238486043	238486042	-	High_confidence	11	11	51	3.275016	4.933661	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480403	238486044	LINC01139|ENST00000649385.1	-	238480403,238485784,238486004	238481681,238485896,238486044	0.705882
thyroid_gland_female_adult_51_years	chr2	210225579	210225591	210225579	-	High_confidence	9	9	22	1.412752	3.408549	chr2	210225525	210225678	DNA|hAT-Charlie|Charlie24	-	chr2	210187938	210225491	ACADL|ENST00000233710.3	-	210187938,210192803,210195210,210203330,210204580,210205631,210210195,210216346,210217964,210220646,210225186	210189054,210192890,210195338,210203444,210204682,210205796,210210262,210216511,210218102,210220802,210225491	1.000000
thyroid_gland_female_adult_51_years	chr16	74485813	74485854	74485822	-	RAMPAGE_only	3	3	15	0.963240	2.896292	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	0.933333
thyroid_gland_female_adult_51_years	chr6	112880122	112880147	112880122	+	High_confidence	3	3	16	1.027456	3.456565	chr6	112879825	112880495	LTR|ERV1|MER52C	-	chr6	112880133	112883123	STRG.56084.1	+	112880133,112883040	112880838,112883123	0.500000
thyroid_gland_female_adult_51_years	chrX	47179136	47179159	47179136	+	High_confidence	2	2	8	0.513728	2.807355	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	0.875000
thyroid_gland_female_adult_51_years	chr17	47067498	47067518	47067498	-	High_confidence	313	333	1238	79.499403	5.912645	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.928918
thyroid_gland_female_adult_51_years	chr19	35899309	35899345	35899344	-	High_confidence	3	3	11	0.706376	3.277613	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35887951	35899737	NFKBID|NM_001321831.1	-	35887951,35889889,35890373,35895979,35896217,35896391,35896725,35896912,35897650,35898471,35898718,35899706	35888612,35890054,35890490,35896128,35896269,35896538,35896831,35897103,35897838,35898532,35898822,35899737	1.000000
thyroid_gland_female_adult_51_years	chr7	87040212	87040223	87040212	-	High_confidence	24	29	88	5.651008	5.497736	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86897477	87040682	STRG.63814.5	-	86897477,86907669,86908446,86909811,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86897632,86907771,86908565,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040682	0.920455
thyroid_gland_female_adult_51_years	chr12	27579419	27579434	27579433	+	RAMPAGE_only	2	3	8	0.513728	2.521641	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27535486	27676557	STRG.93514.6	+	27535486,27537787,27578151,27633361,27634909,27646061,27647728,27650009,27654721,27656615,27658815,27664361,27667165,27671430,27672426,27673766,27674191,27676427	27537729,27538299,27578239,27633460,27635115,27646148,27647842,27650141,27654814,27656730,27660945,27664446,27667320,27671546,27672483,27673827,27674221,27676557	0.750000
thyroid_gland_female_adult_51_years	chr19	20513324	20513396	20513369	-	High_confidence	6	6	25	1.605400	4.175736	chr19	20510335	20518101	LTR|ERV1|HERVE_a-int	-	chr19	20508814	20513396	STRG.122394.2	-	20508814	20513396	0.920000
thyroid_gland_female_adult_51_years	chr3	44120801	44120804	44120801	+	RAMPAGE_only	3	3	8	0.513728	2.521641	chr3	44120733	44120815	LINE|L2|L2b	+	chr3	44117298	44122365	AC006058.1|ENST00000568686.1	+	44117298	44122365	0.875000
thyroid_gland_female_adult_51_years	chr7	27827749	27827813	27827812	+	RAMPAGE_only	5	5	18	1.155888	3.337175	chr7	27827862	27827982	DNA|hAT-Charlie|MER5A	+	chr7	27793137	27829022	TAX1BP1|ENST00000457186.2	+	27793137,27794322,27796115,27799964,27803108,27816348,27816889,27827737,27828627	27793212,27794446,27796219,27800090,27803180,27816394,27817038,27827820,27829022	0.944444
thyroid_gland_female_adult_51_years	chr13	93454833	93454840	93454833	+	High_confidence	2	3	7	0.449512	2.807355	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93455067	94407399	STRG.100160.2	+	93455067,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93455438,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407399	0.857143
thyroid_gland_female_adult_51_years	chr19	20368237	20368280	20368237	+	RAMPAGE_only	6	6	34	2.183344	4.558051	chr19	20362807	20371352	LTR|ERV1|HERVS71-int	+	chr19	20362593	20371952	STRG.122324.1	+	20362593,20369177	20362794,20371952	0.764706
thyroid_gland_female_adult_51_years	chr3	42770599	42770600	42770599	+	High_confidence	22	22	23	1.476968	3.170135	chr3	42769529	42771022	LTR|ERV1|LTR12C	+	chr3	42770611	42773635	LOC729083|NR_122070.1	+	42770611,42773204	42771077,42773635	0.869565
thyroid_gland_female_adult_51_years	chr7	77416673	77416739	77416738	-	High_confidence	4	4	18	1.155888	2.614369	chr7	77416711	77416761	DNA|hAT-Charlie|MER5B	+	chr7	77310750	77416400	GSAP|NM_017439.3	-	77310750,77311840,77312100,77313487,77314369,77320724,77321332,77323646,77326211,77328605,77329332,77330238,77349350,77352943,77353571,77355212,77355554,77360823,77362582,77374069,77375057,77376847,77377285,77381304,77382573,77387359,77396981,77397345,77404558,77406028,77416212	77311449,77311940,77312202,77313549,77314489,77320819,77321403,77323742,77326273,77328637,77329391,77330367,77349404,77353026,77353641,77355430,77355647,77360901,77362660,77374155,77375101,77376907,77377390,77381354,77382643,77387448,77397035,77397415,77404615,77406105,77416400	0.833333
thyroid_gland_female_adult_51_years	chr14	81170372	81170414	81170392	-	High_confidence	25	25	199	12.778983	6.052888	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.824121
thyroid_gland_female_adult_51_years	chr14	81166251	81166336	81166335	-	High_confidence	41	44	205	13.164279	6.057419	chr14	81166191	81166439	LTR|ERVL-MaLR|MLT1J2	+	chr14	81150670	81166725	STRG.104743.7	-	81150670,81166112	81165381,81166725	0.921951
thyroid_gland_female_adult_51_years	chr1	53902412	53902424	53902412	-	RAMPAGE_only	17	18	48	3.082368	5.178509	chr1	53901976	53902482	LINE|L2|L2a	+	chr1	53851732	53889834	YIPF1|ENST00000072644.6	-	53851732,53860055,53866199,53866757,53871371,53878314,53878641,53883112,53888906,53889243,53889712	53852270,53860153,53866382,53866924,53871488,53878402,53878722,53883276,53888986,53889463,53889834	0.666667
thyroid_gland_female_adult_51_years	chr2	160035356	160035380	160035356	+	High_confidence	7	7	20	1.284320	3.621928	chr2	160035321	160035476	LTR|ERVL|LTR16A	+	chr2	160035365	160061264	STRG.19251.2	+	160035365,160056125,160060462	160035501,160056230,160061264	0.500000
thyroid_gland_female_adult_51_years	chr15	40406528	40406544	40406543	+	High_confidence	3	3	7	0.449512	2.584963	chr15	40406511	40406643	SINE|Alu|AluJo	+	chr15	40405794	40418767	IVD|ENST00000487418.6	+	40405794,40407635,40407938,40410627,40411259,40411554,40412990,40414888,40415400,40416077,40416289,40418129	40405971,40407725,40407990,40410797,40411353,40411691,40413087,40414982,40415482,40416182,40416362,40418767	0.571429
thyroid_gland_female_adult_51_years	chr12	9739966	9739982	9739974	+	RAMPAGE_only	2	2	8	0.513728	2.521641	chr12	9738753	9740142	LTR|ERV1|LTR12C	-	chr12	9827480	9845007	KLRF1|ENST00000617889.4	+	9827480,9832315,9833302,9841811,9842320,9844417	9827629,9832414,9833452,9841951,9842433,9845007	0.500000
thyroid_gland_female_adult_51_years	chr11	36609784	36609819	36609784	+	RAMPAGE_only	8	8	22	1.412752	3.845351	chr11	36609726	36609793	LINE|CR1|L3	+	chr11	36594849	36659274	C11orf74|ENST00000532470.2	+	36594849,36597643,36610080,36633283,36636050,36648015,36659018	36594915,36597730,36610239,36633438,36636117,36648155,36659274	0.863636
thyroid_gland_female_adult_51_years	chr19	20409405	20409411	20409410	-	High_confidence	4	5	8	0.513728	2.521641	chr19	20409218	20409462	SINE|Alu|AluSp	-	chr19	20397333	20409959	ZNF826P|ENST00000622273.1	-	20397333,20408949,20409829	20399038,20409024,20409959	0.875000
thyroid_gland_female_adult_51_years	chr1	21013096	21013143	21013096	-	RAMPAGE_only	4	4	34	2.183344	4.413910	chr1	21012696	21013221	LINE|L1|L1PBa	+	chr1	20806469	21050994	EIF4G3|ENST00000264211.12	-	20806469,20810737,20813157,20817391,20825099,20827616,20829146,20840855,20849414,20851257,20853559,20854977,20857402,20860384,20862227,20864475,20865115,20879322,20886200,20893516,20895367,20899696,20904882,20941490,20950002,20969473,20973001,20980333,20981047,21002712,21050865	20807500,20810884,20813239,20817538,20825198,20827698,20829272,20841028,20849530,20851478,20853677,20855071,20857497,20860517,20862332,20864712,20865262,20879520,20886371,20893636,20895501,20899943,20904971,20942330,20950111,20969596,20973099,20980448,20981227,21002808,21050994	0.852941
thyroid_gland_female_adult_51_years	chr9	97575039	97575040	97575039	+	RAMPAGE_only	11	13	13	0.834808	3.238901	chr9	97574036	97575455	LTR|ERV1|LTR12C	+	chr9	97501645	97601254	STRG.77890.2	+	97501645,97524140,97553280,97562731,97564037,97565847,97568893,97591290,97599633	97501803,97524308,97553400,97562821,97564168,97565955,97575486,97591435,97601254	0.923077
thyroid_gland_female_adult_51_years	chr19	34860633	34860646	34860633	-	High_confidence	6	6	15	0.963240	3.006239	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.666667
thyroid_gland_female_adult_51_years	chr1	212792444	212792445	212792444	-	High_confidence	7	7	10	0.642160	2.725481	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.900000
thyroid_gland_female_adult_51_years	chr2	113237250	113237277	113237276	-	High_confidence	3	3	8	0.513728	3.000000	chr2	113237106	113237236	SINE|MIR|MIR	-	chr2	113225596	113237508	PAX8|ENST00000485840.1	-	113225596,113235393,113236600	113227256,113235582,113237508	1.000000
thyroid_gland_female_adult_51_years	chr3	139344537	139344548	139344547	+	High_confidence	27	27	56	3.596096	4.779189	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.892857
thyroid_gland_female_adult_51_years	chr2	46904324	46904358	46904354	-	RAMPAGE_only	3	5	13	0.834808	3.022055	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.923077
thyroid_gland_female_adult_51_years	chr15	32613813	32613833	32613832	+	High_confidence	8	9	14	0.899024	3.026987	chr15	32613860	32614055	LINE|CR1|L3	+	chr15	32613732	32615111	AC123768.2|ENST00000500941.2	+	32613732,32614108,32614739	32613998,32614202,32615111	0.571429
thyroid_gland_female_adult_51_years	chr19	20214119	20214175	20214150	+	High_confidence	22	22	178	11.430447	5.906123	chr19	20213862	20215311	Retroposon|SVA|SVA_D	+	chr19	20213945	20222463	STRG.122308.2	+	20213945,20219683	20218857,20222463	0.994382
thyroid_gland_female_adult_51_years	chr1	31654253	31654322	31654265	-	RAMPAGE_only	11	16	76	4.880416	5.015961	chr1	31654231	31654348	LINE|L2|L2c	+	chr1	31652587	31663456	COL16A1|ENST00000488897.5	-	31652587,31653598,31653866,31654791,31655313,31656097,31657032,31658487,31658913,31660584,31661065,31661413,31661659,31662333,31662586	31652853,31653676,31654043,31654858,31655502,31656444,31657068,31658577,31658964,31660638,31661119,31661458,31661704,31662387,31663456	0.921053
thyroid_gland_female_adult_51_years	chr12	118139096	118139097	118139096	+	High_confidence	9	9	9	0.577944	3.169925	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.777778
thyroid_gland_female_adult_51_years	chr20	15328272	15328293	15328272	+	RAMPAGE_only	6	8	26	1.669616	3.636921	chr20	15327854	15328480	LINE|L2|L2a	-	chr20	15196857	16053197	MACROD2|ENST00000402914.5	+	15196857,15229939,15431404,15499773,15862744,15885763,15933275,15937475,15967552,15986726,15987065,16041200,16044570,16049829	15197032,15230061,15431435,15499847,15862826,15885811,15933338,15937544,15967630,15986801,15987158,16041278,16044639,16053197	0.538462
thyroid_gland_female_adult_51_years	chr1	19344388	19344429	19344388	-	RAMPAGE_only	10	10	30	1.926480	4.506891	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
thyroid_gland_female_adult_51_years	chr22	23527443	23527515	23527506	+	High_confidence	16	16	63	4.045608	5.211174	chr22	23527401	23527785	LINE|L2|L2b	-	chr22	23527384	23547797	STRG.130133.1	+	23527384,23536971,23538672,23546485	23527564,23537136,23544306,23547797	0.936508
thyroid_gland_female_adult_51_years	chr17	1769722	1769723	1769722	+	RAMPAGE_only	5	5	7	0.449512	2.807355	chr17	1769649	1769740	DNA|TcMar-Tigger|Tigger19a	+	chr17	1762828	1771141	SERPINF1|ENST00000570731.5	+	1762828,1766902,1769851,1771028	1762883,1766994,1770050,1771141	0.571429
thyroid_gland_female_adult_51_years	chr10	73536384	73536401	73536384	-	RAMPAGE_only	3	5	18	1.155888	3.734522	chr10	73536351	73536426	LINE|L1|L1PBa	+	chr10	73497537	73534770	USP54|ENST00000466048.6	-	73497537,73500654,73504849,73505307,73516374,73520907,73523582,73526646,73529679,73530142,73534599	73499188,73500838,73504990,73505426,73517747,73521027,73523750,73526780,73529911,73530523,73534770	0.722222
thyroid_gland_female_adult_51_years	chr2	71024055	71024083	71024055	+	High_confidence	14	15	55	3.531880	5.012911	chr2	71020399	71024471	LTR|ERV1|HERVE-int	+	chr2	71024074	71029931	OR7E91P|NR_002185.3	+	71024074,71024305,71028915	71024200,71024394,71029931	0.581818
thyroid_gland_female_adult_51_years	chr21	28048446	28048447	28048446	+	High_confidence	52	52	56	3.596096	4.197079	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.982143
thyroid_gland_female_adult_51_years	chr9	135444253	135444260	135444253	-	High_confidence	51	51	83	5.329928	5.939690	chr9	135444140	135444321	LTR|ERV1|LTR2C	-	chr9	135436306	135444289	STRG.79918.3	-	135436306,135440069	135440034,135444289	0.855422
thyroid_gland_female_adult_51_years	chr8	27633350	27633375	27633362	+	High_confidence	2	2	10	0.642160	3.169925	chr8	27633291	27633377	SINE|MIR|MIR3	-	chr8	27633363	27673020	STRG.69289.1	+	27633363,27634043,27649701,27651507,27656781,27658495,27670899	27633695,27634207,27649800,27651627,27656880,27659539,27673020	0.900000
thyroid_gland_female_adult_51_years	chr18	7946867	7946888	7946878	+	High_confidence	15	16	35	2.247560	4.535849	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.714286
thyroid_gland_female_adult_51_years	chr2	159428313	159428357	159428356	-	RAMPAGE_only	14	15	31	1.990696	4.168326	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.612903
thyroid_gland_female_adult_51_years	chrX	16712879	16712959	16712889	-	High_confidence	7	7	31	1.990696	4.413716	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.967742
thyroid_gland_female_adult_51_years	chr1	153967486	153967512	153967486	+	High_confidence	12	13	43	2.761288	4.208298	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153973072	STRG.7691.7	+	153967533,153968521,153968929,153969333,153972743,153972971	153967884,153968699,153969176,153969455,153972836,153973072	0.906977
thyroid_gland_female_adult_51_years	chr11	74070871	74070874	74070873	-	High_confidence	10	13	19	1.220104	3.947703	chr11	74070756	74071175	LINE|L2|L2c	+	chr11	74049518	74070869	C2CD3|ENST00000542484.1	-	74049518,74054606,74057405,74070505	74049542,74054671,74057544,74070869	0.736842
thyroid_gland_female_adult_51_years	chr6	35543633	35543666	35543648	+	High_confidence	71	125	298	19.136367	6.706241	chr6	35543503	35543668	DNA|hAT-Charlie|MER5B	+	chr6	35543633	35598515	STRG.52982.3	+	35543633,35544867,35593029	35543758,35544933,35598515	0.546980
thyroid_gland_female_adult_51_years	chr15	57516608	57516725	57516614	+	High_confidence	15	16	118	7.577488	5.602681	chr15	57516656	57516717	SINE|MIR|MIR	+	chr15	57516448	57550727	STRG.108167.3	+	57516448,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547351	57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.974576
thyroid_gland_female_adult_51_years	chr12	27579244	27579245	27579244	+	RAMPAGE_only	7	7	11	0.706376	3.321928	chr12	27579150	27579292	SINE|MIR|MIR3	+	chr12	27535486	27676557	STRG.93514.6	+	27535486,27537787,27578151,27633361,27634909,27646061,27647728,27650009,27654721,27656615,27658815,27664361,27667165,27671430,27672426,27673766,27674191,27676427	27537729,27538299,27578239,27633460,27635115,27646148,27647842,27650141,27654814,27656730,27660945,27664446,27667320,27671546,27672483,27673827,27674221,27676557	0.545455
thyroid_gland_female_adult_51_years	chr3	49181586	49181640	49181617	+	High_confidence	4	4	19	1.220104	4.037401	chr3	49181626	49181796	LINE|L1|L1MD1	+	chr3	49181487	49182185	STRG.26551.1	+	49181487	49182185	0.578947
thyroid_gland_female_adult_51_years	chr4	128428000	128428006	128428005	+	High_confidence	20	20	37	2.375992	4.482289	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.729730
thyroid_gland_female_adult_51_years	chr19	20358162	20358163	20358162	+	High_confidence	53	53	62	3.981392	4.983342	chr19	20357990	20358269	LTR|ERVL|LTR66	+	chr19	20358185	20371952	STRG.122324.2	+	20358185,20369177	20358333,20371952	0.741935
thyroid_gland_female_adult_51_years	chr8	57746128	57746129	57746128	+	High_confidence	9	9	11	0.706376	2.721928	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.909091
thyroid_gland_female_adult_51_years	chr2	38319324	38319348	38319347	-	High_confidence	3	3	9	0.577944	2.500000	chr2	38319316	38319616	SINE|Alu|AluJb	+	chr2	38296482	38318624	ATL2|ENST00000629272.2	-	38296482,38296685,38298143,38299255,38300271,38309378,38310308,38313150,38314607,38315283,38318534	38296590,38296700,38298575,38299327,38300328,38309506,38310447,38313243,38314664,38315334,38318624	0.666667
thyroid_gland_female_adult_51_years	chr7	37438974	37439027	37439026	-	RAMPAGE_only	5	5	21	1.348536	4.121928	chr7	37439006	37439070	DNA|hAT-Tip100?|MamRep1879	+	chr7	37269453	37448856	ELMO1|ENST00000463390.1	-	37269453,37314849,37315919,37342612,37448674	37271882,37314922,37315960,37342763,37448856	0.619048
thyroid_gland_female_adult_51_years	chr21	42350424	42350451	42350424	-	High_confidence	4	4	10	0.642160	2.721928	chr21	42350245	42350552	SINE|Alu|AluJb	+	chr21	42346421	42350994	TFF2|ENST00000475297.1	-	42346421,42347485,42349880,42350266,42350878	42346546,42347632,42350030,42350359,42350994	0.900000
thyroid_gland_female_adult_51_years	chrX	147937542	147937599	147937598	+	RAMPAGE_only	3	3	13	0.834808	3.334679	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147943244	147948830	STRG.137859.13	+	147943244,147945533,147948682	147945051,147945616,147948830	0.923077
thyroid_gland_female_adult_51_years	chr17	28605048	28605090	28605048	-	High_confidence	9	9	37	2.375992	4.171861	chr17	28603476	28605306	Retroposon|SVA|SVA_D	-	chr17	28602615	28605267	STRG.115294.9	-	28602615	28605267	0.891892
thyroid_gland_female_adult_51_years	chr8	56559496	56559497	56559496	-	High_confidence	23	23	31	1.990696	4.607264	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.580645
thyroid_gland_female_adult_51_years	chr3	14225516	14225558	14225557	+	RAMPAGE_only	298	321	589	37.823222	4.892168	chr3	14225513	14226223	LTR|ERVK|HERVK3-int	+	chr3	14178766	14230817	STRG.24760.1	+	14178766,14181559,14183936,14225446,14229704	14178881,14181670,14184032,14225626,14230817	0.876061
thyroid_gland_female_adult_51_years	chr8	91350588	91350603	91350588	+	RAMPAGE_only	2	2	8	0.513728	2.807355	chr8	91350361	91351015	LINE|L1|L1ME1	-	chr8	91249306	91393836	STRG.71433.4	+	91249306,91249538,91289135,91295530,91318215,91334294,91338149,91340403,91343352,91352900,91362352,91363471,91366579,91369784,91389337,91393796	91249413,91249844,91289246,91295703,91318380,91334447,91338232,91340551,91351887,91352996,91362459,91363538,91366717,91369833,91389438,91393836	0.875000
thyroid_gland_female_adult_51_years	chr6	3175836	3175844	3175836	+	RAMPAGE_only	11	11	25	1.605400	4.229871	chr6	3175663	3176185	LTR|ERVL-MaLR|MLT1E3	+	chr6	3258960	3307908	STRG.51100.5	+	3258960,3302857	3259196,3307908	0.600000
thyroid_gland_female_adult_51_years	chr9	64019198	64019215	64019198	+	RAMPAGE_only	13	13	20	1.284320	4.021928	chr9	64018820	64020467	LINE|L1|L1PB	-	chr9	64114291	64116007	STRG.75880.1	+	64114291,64115829	64114457,64116007	0.500000
thyroid_gland_female_adult_51_years	chrX	23692227	23692231	23692227	-	High_confidence	107	121	161	10.338775	5.957286	chrX	23691675	23692316	LTR|ERVL|MER21A	-	chrX	23063541	23692297	STRG.132580.3	-	23063541,23659372,23692032	23064121,23659627,23692297	0.627329
thyroid_gland_female_adult_51_years	chr6	43013392	43013393	43013392	-	High_confidence	12	12	13	0.834808	3.418296	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.923077
thyroid_gland_female_adult_51_years	chr8	42398408	42398433	42398408	+	RAMPAGE_only	8	8	19	1.220104	3.787144	chr8	42398281	42398526	SINE|Alu|AluSz6	-	chr8	42399549	42401905	VDAC3|ENST00000522178.1	+	42399549,42401787	42399703,42401905	0.631579
thyroid_gland_female_adult_51_years	chr3	46558627	46558636	46558627	+	RAMPAGE_only	5	7	9	0.577944	2.947703	chr3	46558357	46558849	LINE|L1|L1MEf	-	chr3	46557397	46559688	LRRC2-AS1|ENST00000599511.1	+	46557397	46559688	0.777778
thyroid_gland_female_adult_51_years	chr13	49495593	49495633	49495632	+	High_confidence	10	10	35	2.247560	3.968340	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495609	49528992	PHF11|NM_001040443.2	+	49495609,49506634,49513058,49518017,49520893,49522042,49523174,49524084,49526386,49528510	49496095,49506756,49513166,49518151,49520940,49522107,49523241,49524216,49526458,49528992	0.914286
thyroid_gland_female_adult_51_years	chr16	15006394	15006422	15006421	+	RAMPAGE_only	2	2	9	0.577944	2.500000	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.666667
thyroid_gland_female_adult_51_years	chr18	73264461	73264502	73264501	-	High_confidence	4	4	18	1.155888	3.969816	chr18	73264307	73264608	SINE|Alu|AluY	+	chr18	73154057	73264498	LOC400655|NR_034133.1	-	73154057,73159540,73161823,73200652,73255812,73264239	73155935,73159664,73161973,73200789,73255918,73264498	0.722222
thyroid_gland_female_adult_51_years	chr3	114624940	114625007	114624984	-	High_confidence	74	78	441	28.319254	6.508340	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.682540
thyroid_gland_female_adult_51_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	9	9	9	0.577944	2.947703	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
thyroid_gland_female_adult_51_years	chr5	140250522	140250541	140250522	-	RAMPAGE_only	8	8	16	1.027456	3.375000	chr5	140250210	140250661	LINE|L2|L2a	+	chr5	140245086	140300583	PFDN1|ENST00000514611.1	-	140245086,140300415	140246057,140300583	0.500000
thyroid_gland_female_adult_51_years	chr3	164451294	164451328	164451327	+	High_confidence	72	73	201	12.907415	6.414838	chr3	164449656	164452200	LINE|L1|L1PA15	-	chr3	164451286	164623087	STRG.32113.1	+	164451286,164532285,164608991,164619324	164451535,164532393,164609068,164623087	0.641791
thyroid_gland_female_adult_51_years	chr9	129698737	129698747	129698737	+	High_confidence	17	17	41	2.632856	4.338663	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129698620	129722642	STRG.79749.2	+	129698620,129719230,129720595,129722216	129698809,129719418,129720774,129722642	0.951220
thyroid_gland_female_adult_51_years	chr2	174409993	174410040	174410039	+	High_confidence	5	5	11	0.706376	3.095795	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410081	174427895	SCRN3|ENST00000549848.5	+	174410081,174422884,174424474,174427712	174410503,174423047,174424649,174427895	1.000000
thyroid_gland_female_adult_51_years	chr5	151687233	151687241	151687240	-	High_confidence	5	5	15	0.963240	3.235926	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.933333
thyroid_gland_female_adult_51_years	chr2	233794206	233794232	233794206	+	High_confidence	19	19	53	3.403448	4.788780	chr2	233794052	233794248	SINE|MIR|MIR	-	chr2	233794222	233805720	STRG.23350.1	+	233794222,233795652,233795966,233796199,233798773,233799779,233800204,233802167,233803447,233804050,233804494,233805003	233794506,233795745,233796045,233796313,233798850,233799899,233800315,233802315,233803488,233804192,233804547,233805720	0.962264
thyroid_gland_female_adult_51_years	chr20	3795740	3795783	3795750	+	High_confidence	25	31	125	8.026999	5.784496	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.968000
thyroid_gland_female_adult_51_years	chr18	49561267	49561284	49561283	+	High_confidence	4	5	10	0.642160	3.321928	chr18	49561276	49561483	SINE|MIR|MIRb	-	chr18	49561171	49599182	STRG.119759.3	+	49561171,49565316,49567441,49569436,49575368,49581414,49582361,49586745,49590500	49561460,49565498,49567621,49569548,49575590,49581657,49583774,49586850,49599182	1.000000
thyroid_gland_female_adult_51_years	chr12	120495908	120495946	120495945	-	High_confidence	37	44	154	9.889263	6.189915	chr12	120495927	120495980	LTR|ERV1|LTR71B	+	chr12	120490337	120495946	NRAV|NR_038854.1	-	120490337,120495822	120492110,120495946	0.987013
thyroid_gland_female_adult_51_years	chrX	5726324	5726325	5726324	-	High_confidence	42	44	55	3.531880	4.747362	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.890909
thyroid_gland_female_adult_51_years	chr8	53523862	53523891	53523862	-	High_confidence	4	5	16	1.027456	3.323231	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.937500
thyroid_gland_female_adult_51_years	chr6	118651542	118651626	118651592	-	High_confidence	11	11	57	3.660312	5.503857	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.964912
thyroid_gland_female_adult_51_years	chr15	53911116	53911167	53911166	+	High_confidence	5	6	26	1.669616	4.168296	chr15	53910904	53913193	LTR|ERVL|HERVL18-int	+	chr15	53910768	53914712	AC084759.3|ENST00000624468.1	+	53910768	53914712	0.884615
thyroid_gland_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	85	86	86	5.522576	4.826233	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.930233
thyroid_gland_female_adult_51_years	chr3	176916956	176916974	176916956	-	High_confidence	33	33	77	4.944632	5.611552	chr3	176916689	176916913	LTR|ERV1|MER92D	-	chr3	176916306	176916965	STRG.32861.1	-	176916306	176916965	0.636364
thyroid_gland_female_adult_51_years	chr11	65382641	65382702	65382645	-	High_confidence	11	11	37	2.375992	4.972835	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	1.000000
thyroid_gland_female_adult_51_years	chr12	109112895	109112903	109112902	+	RAMPAGE_only	3	3	8	0.513728	2.750000	chr12	109112836	109113146	DNA|hAT-Charlie|MER58B	-	chr12	109111217	109180040	STRG.97101.4	+	109111217,109113065,109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916	109111472,109113415,109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180040	1.000000
thyroid_gland_female_adult_51_years	chr1	147173173	147173220	147173219	+	High_confidence	3	3	15	0.963240	3.521641	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.666667
thyroid_gland_female_adult_51_years	chr5	177883461	177883489	177883461	+	RAMPAGE_only	27	28	196	12.586335	6.177171	chr5	177883451	177883608	SINE|MIR|MIR	+	chr5	177875521	177884272	AC106795.1|ENST00000506672.5	+	177875521,177876531,177878643,177882368,177882651,177883666	177875860,177876688,177878848,177882530,177882752,177884272	0.765306
thyroid_gland_female_adult_51_years	chr6	34757079	34757109	34757100	+	High_confidence	9	10	35	2.247560	4.036007	chr6	34757127	34757285	LINE|L2|L2a	+	chr6	34757093	34773857	SNRPC|NM_003093.2	+	34757093,34757911,34762594,34767907,34770290,34773445	34757551,34757954,34762703,34767997,34770395,34773857	0.942857
thyroid_gland_female_adult_51_years	chr3	151539250	151539316	151539270	-	RAMPAGE_only	4	4	18	1.155888	3.969816	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.555556
thyroid_gland_female_adult_51_years	chr4	102431244	102431248	102431247	-	High_confidence	13	14	22	1.412752	3.784942	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.681818
thyroid_gland_female_adult_51_years	chr14	80957132	80957189	80957132	+	RAMPAGE_only	27	27	202	12.971631	6.317434	chr14	80957036	80957463	LINE|L2|L2c	+	chr14	80955654	81108918	TSHR|ENST00000554263.5	+	80955654,81062147,81068253,81087953,81091068,81092530,81096638,81108374	80955850,81062219,81068328,81088028,81091143,81092608,81096707,81108918	0.673267
thyroid_gland_female_adult_51_years	chrX	5726096	5726129	5726116	-	High_confidence	13	14	43	2.761288	4.600456	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719231	5726092	STRG.131623.1	-	5719231,5725929	5719872,5726092	0.883721
thyroid_gland_female_adult_51_years	chr4	4269578	4269610	4269609	-	High_confidence	4	4	11	0.706376	2.646439	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.909091
thyroid_gland_female_adult_51_years	chr5	117454948	117454953	117454949	+	High_confidence	39	56	99	6.357384	5.662863	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.808081
thyroid_gland_female_adult_51_years	chr1	100268242	100268281	100268280	+	RAMPAGE_only	5	5	21	1.348536	2.869738	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266288	100292769	STRG.6107.2	+	100266288,100266523,100268151,100270556,100273393,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100268295,100270680,100274965,100275723,100277316,100285322,100287203,100292769	1.000000
thyroid_gland_female_adult_51_years	chr11	64242611	64242620	64242619	+	High_confidence	13	13	28	1.798048	4.134336	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.964286
thyroid_gland_female_adult_51_years	chr21	8817798	8817799	8817798	+	RAMPAGE_only	48	53	59	3.788744	4.606291	chr21	8817416	8819072	LINE|L1|L1PB	-	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	0.966102
thyroid_gland_female_adult_51_years	chr9	121313980	121314021	121314002	+	RAMPAGE_only	36	39	176	11.302015	5.234438	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
thyroid_gland_female_adult_51_years	chr2	107529599	107529620	107529619	+	High_confidence	4	4	8	0.513728	2.750000	chr2	107529145	107529729	LTR|ERV1|LTR9	-	chr2	107529486	107533846	STRG.17091.3	+	107529486	107533846	1.000000
thyroid_gland_female_adult_51_years	chr11	71745875	71745936	71745935	+	High_confidence	80	84	504	32.364862	6.082186	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.918651
thyroid_gland_female_adult_51_years	chr7	80369531	80369575	80369531	+	High_confidence	58	58	248	15.925567	6.690073	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.754032
thyroid_gland_female_adult_51_years	chr3	14225331	14225365	14225364	+	RAMPAGE_only	17	19	44	2.825504	4.606138	chr3	14225057	14225513	LTR|ERVK|LTR3A	+	chr3	14178766	14230817	STRG.24760.1	+	14178766,14181559,14183936,14225446,14229704	14178881,14181670,14184032,14225626,14230817	0.568182
thyroid_gland_female_adult_51_years	chr22	49925503	49925509	49925503	+	RAMPAGE_only	3	4	8	0.513728	2.521641	chr22	49925493	49925572	LINE|CR1|L3b	+	chr22	49923209	49927528	CRELD2|ENST00000487969.1	+	49923209,49927254	49925557,49927528	0.875000
thyroid_gland_female_adult_51_years	chr11	12989579	12989597	12989579	-	High_confidence	4	4	12	0.770592	3.084963	chr11	12989406	12989730	LTR|ERVL-MaLR|THE1D	-	chr11	12980037	12989537	LINC00958|ENST00000532541.5	-	12980037,12986039,12988401,12989455	12980909,12986144,12988466,12989537	0.500000
thyroid_gland_female_adult_51_years	chr19	3062922	3062983	3062922	-	High_confidence	22	23	90	5.779440	5.287620	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.977778
thyroid_gland_female_adult_51_years	chr15	62753449	62753456	62753449	+	RAMPAGE_only	5	5	13	0.834808	2.918296	chr15	62753239	62753497	LTR|ERVL-MaLR|MLT1L	-	chr15	62740444	62841486	TLN2|ENST00000489129.5	+	62740444,62748350,62750401,62752304,62753772,62761680,62762271,62763562,62766320,62770963,62776763,62781139,62783770,62792640,62796126,62797218,62800367,62800652,62805599,62809924,62819515,62820485,62833503,62835736,62835890,62838855,62840481	62740769,62748444,62750491,62752427,62755693,62761821,62762453,62763695,62766422,62771134,62776910,62781241,62783890,62792787,62796293,62797402,62800493,62800769,62805785,62810032,62819621,62820610,62833629,62835799,62836073,62838981,62841486	0.923077
thyroid_gland_female_adult_51_years	chr2	36513734	36513757	36513740	+	High_confidence	2	3	8	0.513728	2.750000	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.750000
thyroid_gland_female_adult_51_years	chr15	57451559	57451569	57451564	+	RAMPAGE_only	4	4	11	0.706376	3.321928	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.909091
thyroid_gland_female_adult_51_years	chr5	148319974	148319975	148319974	+	RAMPAGE_only	5	7	8	0.513728	2.807355	chr5	148319975	148321427	LINE|L1|L1P1	+	chr5	148321202	148339722	SPINK9|ENST00000511717.6	+	148321202,148323678,148336421,148338477,148339666	148321400,148323868,148336453,148338605,148339722	0.625000
thyroid_gland_female_adult_51_years	chr6	26956588	26956606	26956588	-	High_confidence	3	3	9	0.577944	2.503258	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.555556
thyroid_gland_female_adult_51_years	chr3	37683694	37683709	37683702	+	RAMPAGE_only	4	5	10	0.642160	3.121928	chr3	37683583	37683799	SINE|MIR|MIRc	-	chr3	37452321	37819790	ITGA9|NM_002207.2	+	37452321,37471006,37473353,37481483,37494500,37503177,37505999,37508558,37513762,37517503,37519259,37523520,37526025,37533313,37542424,37629186,37653713,37683864,37732711,37736903,37741729,37743925,37750461,37777391,37779901,37784976,37803822,37818890	37452559,37471134,37473460,37481607,37494568,37503307,37506085,37508627,37513900,37517609,37519354,37523611,37526071,37533468,37542585,37629336,37653790,37684015,37732798,37736983,37741819,37744034,37750569,37777517,37780021,37785078,37803942,37819790	0.800000
thyroid_gland_female_adult_51_years	chr6	77369017	77369032	77369031	-	RAMPAGE_only	6	7	10	0.642160	3.321928	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77151491	77273309	STRG.54552.3	-	77151491,77271339,77273026	77151974,77271493,77273309	0.600000
thyroid_gland_female_adult_51_years	chr10	4944214	4944236	4944227	+	High_confidence	4	4	13	0.834808	2.617492	chr10	4944209	4944407	LTR|ERVL-MaLR|MSTA	+	chr10	4944133	4947022	STRG.80260.14	+	4944133	4947022	0.538462
thyroid_gland_female_adult_51_years	chr8	144106344	144106365	144106364	+	RAMPAGE_only	5	5	15	0.963240	2.950212	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144104511	144107611	MAF1|ENST00000534585.5	+	144104511,144105639,144105868,144106075,144106342,144106834,144107087	144104858,144105766,144105997,144106241,144106674,144106963,144107611	0.933333
thyroid_gland_female_adult_51_years	chr10	102449836	102449845	102449836	+	High_confidence	16	16	66	4.238256	4.804229	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.818182
thyroid_gland_female_adult_51_years	chr18	46087118	46087174	46087118	-	High_confidence	6	6	31	1.990696	4.607264	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.580645
thyroid_gland_female_adult_51_years	chr8	110203071	110203087	110203086	+	High_confidence	8	8	28	1.798048	4.028605	chr8	110201761	110203133	LTR|ERV1|LTR12C	-	chr8	110202891	110203478	STRG.71951.1	+	110202891	110203478	0.678571
thyroid_gland_female_adult_51_years	chr2	159996829	159996952	159996951	-	RAMPAGE_only	195	200	957	61.454708	6.638883	chr2	159995925	159997907	LINE|L1|L1MCa	-	chr2	159932005	160062610	STRG.19233.8	-	159932005,159942126,159944905,159946800,159947418,159949607,159955198,159955697,159956509,159967538,159969255,159970147,159976067,159976684,159977283,159979829,159983927,159987155,159996107,159999663,160005651,160013262,160016613,160020105,160022664,160028217,160028849,160032958,160042024,160044773,160062294	159941992,159942159,159945082,159946917,159947559,159951578,159955346,159955828,159956627,159967678,159969359,159970212,159976225,159976720,159977416,159979914,159984073,159987358,159999340,160004866,160005821,160013375,160016712,160020263,160022859,160028361,160028963,160033132,160042198,160045157,160062610	0.986416
thyroid_gland_female_adult_51_years	chr6	144349109	144349110	144349109	+	RAMPAGE_only	7	7	9	0.577944	2.750000	chr6	144349009	144349307	SINE|Alu|AluY	-	chr6	144344200	144828851	STRG.58367.2	+	144344200,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789	144344304,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828851	0.666667
thyroid_gland_female_adult_51_years	chr5	151158489	151158523	151158498	-	High_confidence	5	5	20	1.284320	3.932138	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.900000
thyroid_gland_female_adult_51_years	chr20	18794065	18794086	18794077	+	High_confidence	45	45	138	8.861807	3.923071	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.963768
thyroid_gland_female_adult_51_years	chr11	111097287	111097344	111097343	-	High_confidence	5	6	25	1.605400	4.053509	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.960000
thyroid_gland_female_adult_51_years	chr7	111413972	111414028	111413976	-	RAMPAGE_only	4	4	15	0.963240	3.640224	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	110663049	111562291	IMMP2L|NM_032549.3	-	110663049,110886592,110963499,111487237,111521312,111561850	110663721,110886695,110963565,111487341,111521449,111562291	0.533333
thyroid_gland_female_adult_51_years	chr2	174410324	174410372	174410371	+	High_confidence	7	7	40	2.568640	4.404260	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.800000
thyroid_gland_female_adult_51_years	chr8	144160991	144160992	144160991	+	High_confidence	17	17	20	1.284320	3.721612	chr8	144160811	144161348	LTR|ERVL-MaLR|MLT1E2	-	chr8	144161024	144261927	MROH1|ENST00000528919.5	+	144161024,144163770,144168294,144179454,144180177,144180424,144190783,144191714,144192308,144199121,144200427,144220599,144223107,144238755,144239034,144239322,144239613,144240100,144240569,144240991,144241394,144242368,144242601,144243493,144243862,144244221,144244443,144245155,144247300,144247566,144248876,144250211,144254812,144255508,144258776,144259239,144259910,144260185,144260676,144260906,144261113,144261283,144261654	144161089,144163848,144168440,144179586,144180340,144180523,144190935,144191855,144192401,144199200,144200541,144220673,144223230,144238863,144239179,144239363,144239755,144240153,144240677,144241111,144241517,144242515,144242628,144243616,144243942,144244336,144244539,144245260,144247436,144247679,144249029,144250366,144254978,144255705,144258914,144259354,144260057,144260374,144260832,144261041,144261216,144261349,144261927	0.900000
thyroid_gland_female_adult_51_years	chr8	143039246	143039267	143039266	+	High_confidence	15	16	42	2.697072	4.564820	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.690476
thyroid_gland_female_adult_51_years	chr8	38825352	38825367	38825366	+	RAMPAGE_only	3	3	8	0.513728	2.500000	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.500000
thyroid_gland_female_adult_51_years	chr11	64773464	64773498	64773464	-	RAMPAGE_only	2	2	11	0.706376	3.277613	chr11	64773369	64773442	LINE|RTE-BovB|MamRTE1	-	chr11	64769541	64771607	SF1|ENST00000496969.1	-	64769541,64769963,64770255,64771463	64769609,64770053,64770408,64771607	0.636364
thyroid_gland_female_adult_51_years	chr11	118729894	118729904	118729894	-	High_confidence	21	26	62	3.981392	4.704299	chr11	118729206	118730174	LTR|ERVK|LTR5_Hs	-	chr11	118721106	118729892	STRG.91423.1	-	118721106,118729098,118729844	118722075,118729265,118729892	0.532258
thyroid_gland_female_adult_51_years	chr8	132966207	132966222	132966207	+	RAMPAGE_only	2	3	6	0.385296	2.584963	chr8	132966028	132966310	LINE|CR1|L3	+	chr8	132964606	133134903	TG|ENST00000519543.5	+	132964606,132966559,132967793,132969457,132971793,132972597,133011900,133013599,133017777,133019601,133021990,133029820,133095043,133096205,133113421,133116608,133131811,133133469,133134675	132964933,132966697,132967970,132969569,132971873,132972741,133012035,133013764,133017997,133019695,133022150,133030023,133095208,133096373,133113603,133116716,133131946,133133660,133134903	0.500000
thyroid_gland_female_adult_51_years	chr1	23417917	23417950	23417917	-	RAMPAGE_only	11	13	31	1.990696	4.231402	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.967742
thyroid_gland_female_adult_51_years	chr20	50267474	50267480	50267474	+	High_confidence	3	4	11	0.706376	2.721928	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.909091
thyroid_gland_female_adult_51_years	chrX	5726229	5726256	5726255	-	High_confidence	3	3	8	0.513728	2.807355	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.750000
thyroid_gland_female_adult_51_years	chr6	28080277	28080283	28080282	+	High_confidence	27	30	41	2.632856	4.123479	chr6	28079856	28080354	LTR|ERV1|LTR10A	+	chr6	28080302	28089545	STRG.52397.2	+	28080302,28085480,28086171,28088562	28080970,28085891,28086310,28089545	0.926829
thyroid_gland_female_adult_51_years	chr18	47827724	47827758	47827749	+	High_confidence	227	232	1445	92.792114	6.495403	chr18	47827452	47828948	Retroposon|SVA|SVA_B	+	chr18	47827702	47836550	STRG.119599.1	+	47827702,47834840	47828182,47836550	0.975087
thyroid_gland_female_adult_51_years	chr7	1147702	1147743	1147724	-	RAMPAGE_only	6	6	23	1.476968	4.106603	chr7	1146822	1147951	Retroposon|SVA|SVA_E	-	chr7	997632	1138260	C7orf50|ENST00000491163.1	-	997632,1000469,1009949,1127256,1138217	997804,1000551,1010143,1127386,1138260	0.608696
thyroid_gland_female_adult_51_years	chr16	3129626	3129655	3129626	-	RAMPAGE_only	2	2	8	0.513728	2.521641	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3128832	3132042	ZNF213-AS1|ENST00000573447.1	-	3128832,3131746	3129653,3132042	0.625000
thyroid_gland_female_adult_51_years	chr5	122074153	122074156	122074153	-	RAMPAGE_only	4	4	12	0.770592	2.918296	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065943	122076083	LOX|ENST00000505593.5	-	122065943,122070052,122070493,122074012,122075403,122076017	122066749,122070168,122070589,122074169,122075541,122076083	1.000000
thyroid_gland_female_adult_51_years	chr15	65300634	65300635	65300634	-	High_confidence	36	36	38	2.440208	4.537845	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65266576	65300618	PARP16|ENST00000558873.1	-	65266576,65270934,65282546,65300196	65266768,65271072,65282632,65300618	0.789474
thyroid_gland_female_adult_51_years	chr19	17336685	17336727	17336685	+	High_confidence	9	9	23	1.476968	3.969002	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.695652
thyroid_gland_female_adult_51_years	chr11	3477038	3477079	3477055	-	High_confidence	78	79	363	23.310407	6.470420	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3473408	3477061	STRG.86107.2	-	3473408,3476942	3476373,3477061	0.881543
thyroid_gland_female_adult_51_years	chr12	109112927	109112928	109112927	+	RAMPAGE_only	9	9	11	0.706376	3.095795	chr12	109112836	109113146	DNA|hAT-Charlie|MER58B	-	chr12	109111217	109180040	STRG.97101.4	+	109111217,109113065,109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916	109111472,109113415,109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180040	1.000000
thyroid_gland_female_adult_51_years	chr21	42350447	42350488	42350487	+	High_confidence	52	72	204	13.100063	6.720332	chr21	42350245	42350552	SINE|Alu|AluJb	+	chr21	42350456	42365112	STRG.129210.2	+	42350456,42350880,42352398,42352650,42359051,42364276,42364769	42350605,42351013,42352508,42358953,42363421,42364365,42365112	0.789216
thyroid_gland_female_adult_51_years	chr2	76445409	76445410	76445409	-	High_confidence	22	23	27	1.733832	3.676391	chr2	76445391	76445484	LTR|ERV1|MER66B	+	chr2	76445078	76445410	RN7SKP203|ENST00000363618.1	-	76445078	76445410	0.962963
thyroid_gland_female_adult_51_years	chr4	152412497	152412529	152412497	-	High_confidence	4	4	14	0.899024	3.664498	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
thyroid_gland_female_adult_51_years	chr8	124526271	124526281	124526280	-	RAMPAGE_only	9	13	21	1.348536	4.142664	chr8	124525908	124526339	LTR|ERV1|LTR56	+	chr8	124515923	124523479	TATDN1|ENST00000518133.5	-	124515923,124518741,124522150,124522936,124523206	124516030,124518881,124522200,124523002,124523479	0.571429
thyroid_gland_female_adult_51_years	chr7	101217578	101217595	101217578	-	High_confidence	4	4	17	1.091672	4.000000	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.941176
thyroid_gland_female_adult_51_years	chr7	88803648	88803732	88803648	+	RAMPAGE_only	6	6	48	3.082368	4.969002	chr7	88803530	88804193	LINE|L2|L2	-	chr7	88759367	88815023	STRG.64116.3	+	88759367,88796162,88809358	88796106,88809334,88815023	0.958333
thyroid_gland_female_adult_51_years	chr2	113237117	113237137	113237117	-	High_confidence	4	4	11	0.706376	2.845351	chr2	113237106	113237236	SINE|MIR|MIR	-	chr2	113235344	113236929	PAX8|ENST00000554352.1	-	113235344,113236600	113235582,113236929	1.000000
thyroid_gland_female_adult_51_years	chr1	171268995	171268996	171268995	+	High_confidence	33	36	45	2.889720	3.702313	chr1	171268815	171269160	LTR|ERVL-MaLR|THE1B	+	chr1	171269008	171285521	STRG.8345.1	+	171269008,171275345,171278728,171280785,171281977,171283143,171285201	171269086,171275508,171278871,171280985,171282333,171283216,171285521	0.955556
thyroid_gland_female_adult_51_years	chr19	44718579	44718624	44718579	-	High_confidence	3	3	11	0.706376	2.550341	chr19	44718492	44718563	SINE|MIR|MIR3	-	chr19	44715563	44718685	AC243964.2|ENST00000591312.1	-	44715563,44718453	44716083,44718685	0.909091
thyroid_gland_female_adult_51_years	chr22	39021127	39021156	39021127	+	High_confidence	4	4	8	0.513728	2.750000	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
thyroid_gland_female_adult_51_years	chr7	154928480	154928504	154928503	+	High_confidence	41	43	103	6.614248	5.595480	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.893204
thyroid_gland_female_adult_51_years	chr19	19957988	19957992	19957991	+	High_confidence	94	95	156	10.017695	5.222390	chr19	19957700	19958100	LTR|ERVL|LTR66	+	chr19	19958001	19964881	STRG.122264.1	+	19958001,19958488,19963118	19958144,19958554,19964881	0.967949
thyroid_gland_female_adult_51_years	chr4	128570456	128570488	128570487	-	High_confidence	4	4	9	0.577944	3.000000	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.777778
thyroid_gland_female_adult_51_years	chr1	31641127	31641219	31641127	-	RAMPAGE_only	10	10	28	1.798048	4.137538	chr1	31641057	31641163	LINE|L2|L2b	+	chr1	31630788	31644589	PEF1|ENST00000489164.5	-	31630788,31632494,31633158,31635221,31644379	31630842,31632638,31633314,31635522,31644589	0.642857
thyroid_gland_female_adult_51_years	chr3	114759276	114759277	114759276	-	High_confidence	10	11	14	0.899024	3.392747	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.642857
thyroid_gland_female_adult_51_years	chr18	49561352	49561371	49561359	+	High_confidence	2	2	9	0.577944	2.750000	chr18	49561276	49561483	SINE|MIR|MIRb	-	chr18	49561171	49599182	STRG.119759.3	+	49561171,49565316,49567441,49569436,49575368,49581414,49582361,49586745,49590500	49561460,49565498,49567621,49569548,49575590,49581657,49583774,49586850,49599182	0.888889
thyroid_gland_female_adult_51_years	chr10	122127024	122127025	122127024	+	High_confidence	93	93	109	6.999544	5.815155	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.532110
thyroid_gland_female_adult_51_years	chr10	85188732	85188737	85188736	-	High_confidence	11	11	29	1.862264	3.332429	chr10	85184859	85190222	LTR|ERV1|MER41-int	-	chr10	85186838	85188884	STRG.83389.1	-	85186838	85188884	0.862069
thyroid_gland_female_adult_51_years	chr15	40375820	40375857	40375820	-	High_confidence	8	8	21	1.348536	3.939471	chr15	40375715	40376016	DNA|hAT-Charlie|Charlie2a	+	chr15	40357028	40376369	STRG.107187.4	-	40357028,40371838,40375622	40371017,40372094,40376369	0.761905
thyroid_gland_female_adult_51_years	chr4	103079379	103079396	103079379	-	RAMPAGE_only	2	2	6	0.385296	2.584963	chr4	103079071	103079432	LTR|ERVL-MaLR|MLT1A0	+	chr4	103077624	103099867	BDH2|NM_020139.3	-	103077624,103082080,103082870,103085348,103086479,103091176,103092599,103095202,103096182,103099782	103079755,103082173,103082929,103085462,103086540,103091285,103092696,103095281,103096274,103099867	1.000000
thyroid_gland_female_adult_51_years	chr9	125538282	125538302	125538282	+	High_confidence	75	76	111	7.127976	5.259005	chr9	125538091	125538491	LINE|L2|L2	-	chr9	125538234	125541344	STRG.79360.1	+	125538234,125541134	125538364,125541344	0.630631
thyroid_gland_female_adult_51_years	chr9	97751652	97751673	97751652	-	RAMPAGE_only	3	3	8	0.513728	2.750000	chr9	97751486	97751659	SINE|MIR|MIRb	-	chr9	97684960	97765404	STRG.77901.12	-	97684960,97687095,97689533,97693648,97704289,97708919,97713694,97717648,97724412	97685040,97687261,97689639,97693759,97706841,97709011,97713807,97722934,97765404	1.000000
thyroid_gland_female_adult_51_years	chr14	104048991	104049005	104049004	+	High_confidence	7	7	20	1.284320	3.932138	chr14	104048402	104049097	LINE|L1|L1M4a1	-	chr14	104049417	104052665	TDRD9|ENST00000462273.1	+	104049417,104051980	104049680,104052665	0.850000
thyroid_gland_female_adult_51_years	chr16	68834305	68834362	68834361	+	RAMPAGE_only	4	4	22	1.412752	3.845351	chr16	68834273	68834516	SINE|Alu|AluJr	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.727273
thyroid_gland_female_adult_51_years	chrX	5726181	5726194	5726193	-	High_confidence	6	6	10	0.642160	2.725481	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5719231	5726092	STRG.131623.1	-	5719231,5725929	5719872,5726092	0.700000
thyroid_gland_female_adult_51_years	chr9	20658312	20658349	20658348	+	High_confidence	32	64	150	9.632399	5.200297	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658318	20770112	STRG.74469.6	+	20658318,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.806667
thyroid_gland_female_adult_51_years	chr1	12572738	12572784	12572783	-	RAMPAGE_only	4	4	17	1.091672	3.750000	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.941176
thyroid_gland_female_adult_51_years	chrX	35890901	35890902	35890901	+	High_confidence	28	29	35	2.247560	3.964046	chrX	35890725	35891088	LTR|ERVL|LTR41	+	chrX	35890916	35970955	STRG.133251.1	+	35890916,35926016,35941282,35948313,35951130,35951802,35953591,35955960,35966564,35967618,35970767	35891015,35926168,35941398,35948452,35951359,35951963,35953719,35956196,35966754,35967832,35970955	0.742857
thyroid_gland_female_adult_51_years	chr9	92536601	92536602	92536601	-	High_confidence	13	13	13	0.834808	3.238901	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	1.000000
thyroid_gland_female_adult_51_years	chr11	18706991	18707033	18706991	-	High_confidence	17	17	86	5.522576	5.276263	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18703942	18707021	STRG.87090.1	-	18703942,18705816,18706913	18704538,18706146,18707021	0.802326
thyroid_gland_female_adult_51_years	chr15	24919641	24919693	24919688	+	High_confidence	25	27	133	8.540727	6.258643	chr15	24919446	24919852	LTR|ERV1|MER31A	-	chr15	24919550	24977850	STRG.105985.9	+	24919550,24962113,24967931,24974310,24975357,24976304,24976876,24977777	24920124,24962209,24968082,24974456,24975509,24976416,24977029,24977850	0.721805
thyroid_gland_female_adult_51_years	chr8	53523948	53523968	53523967	-	High_confidence	2	4	7	0.449512	2.521641	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
thyroid_gland_female_adult_51_years	chr15	28718680	28718700	28718680	-	RAMPAGE_only	5	6	25	1.605400	4.084963	chr15	28718670	28718973	SINE|Alu|AluSz	+	chr15	28698582	28721232	STRG.105937.5	-	28698582,28700047,28702213,28702464,28703318,28703841,28705158,28705482,28706115,28706398,28706612,28707747,28707952,28708125,28709266,28709528	28699749,28702129,28702369,28702745,28703410,28703917,28705227,28705739,28706203,28706506,28706699,28707857,28708037,28708413,28709347,28721232	0.960000
thyroid_gland_female_adult_51_years	chr10	73536319	73536355	73536354	-	RAMPAGE_only	3	3	7	0.449512	2.584963	chr10	73536351	73536426	LINE|L1|L1PBa	+	chr10	73497537	73534770	USP54|ENST00000466048.6	-	73497537,73500654,73504849,73505307,73516374,73520907,73523582,73526646,73529679,73530142,73534599	73499188,73500838,73504990,73505426,73517747,73521027,73523750,73526780,73529911,73530523,73534770	0.714286
thyroid_gland_female_adult_51_years	chr8	50934345	50934350	50934345	-	High_confidence	7	7	14	0.899024	2.815072	chr8	50934317	50934459	LINE|L2|L2a	+	chr8	50926383	50934774	STRG.69776.1	-	50926383,50934001,50934221,50934693	50926879,50934050,50934461,50934774	0.642857
thyroid_gland_female_adult_51_years	chr8	124673346	124673352	124673346	-	High_confidence	3	3	9	0.577944	2.500000	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.777778
thyroid_gland_female_adult_51_years	chr12	643627	643636	643635	-	High_confidence	20	20	51	3.275016	3.796473	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.960784
thyroid_gland_female_adult_51_years	chr2	86482577	86482600	86482577	+	RAMPAGE_only	6	6	12	0.770592	3.022055	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.666667
thyroid_gland_female_adult_51_years	chr18	71212611	71212617	71212615	+	High_confidence	21	34	63	4.045608	5.326176	chr18	71211548	71213041	LTR|ERV1|LTR12C	-	chr18	71212618	71548036	STRG.120434.1	+	71212618,71395118,71547970	71213089,71395199,71548036	0.714286
thyroid_gland_female_adult_51_years	chr9	123179187	123179221	123179187	-	RAMPAGE_only	4	4	14	0.899024	3.521641	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.785714
thyroid_gland_female_adult_51_years	chr13	93455158	93455206	93455182	+	High_confidence	28	28	110	7.063760	4.467671	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93455067	94407399	STRG.100160.2	+	93455067,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93455438,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407399	0.945455
thyroid_gland_female_adult_51_years	chr19	48868595	48868631	48868595	-	High_confidence	183	196	863	55.418404	7.592026	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.989571
thyroid_gland_female_adult_51_years	chr11	76401697	76401724	76401721	+	RAMPAGE_only	102	102	195	12.522119	4.531670	chr11	76401492	76401803	SINE|Alu|AluSq2	+	chr11	76381324	76408136	GVQW3|ENST00000321844.6	+	76381324,76403659	76382210,76408136	0.994872
thyroid_gland_female_adult_51_years	chr17	39927951	39927961	39927951	-	High_confidence	4	4	9	0.577944	2.641604	chr17	39927855	39928002	SINE|MIR|MIRc	-	chr17	39921040	39927804	ORMDL3|NM_139280.3	-	39921040,39923111,39924029,39927483	39922685,39923263,39924225,39927804	0.777778
thyroid_gland_female_adult_51_years	chr14	22909560	22909561	22909560	-	RAMPAGE_only	4	4	6	0.385296	2.584963	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22906027	22919110	RBM23|ENST00000554955.5	-	22906027,22908332,22909482,22911327,22918998	22906368,22908380,22909595,22911403,22919110	0.500000
thyroid_gland_female_adult_51_years	chr15	34588448	34588451	34588450	-	High_confidence	7	10	12	0.770592	3.251629	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.916667
thyroid_gland_female_adult_51_years	chr15	97875616	97875653	97875618	-	High_confidence	13	29	65	4.174040	5.173642	chr15	97875560	97876737	LTR|ERV1|LTR12D	+	chr15	97873957	97875670	STRG.110257.1	-	97873957	97875670	0.969231
thyroid_gland_female_adult_51_years	chr5	39189918	39189957	39189927	+	High_confidence	3	3	12	0.770592	3.418296	chr5	39189757	39190077	LTR|Gypsy?|LTR85a	+	chr5	39189924	39191828	STRG.42950.1	+	39189924,39190844	39190072,39191828	0.583333
thyroid_gland_female_adult_51_years	chr14	81168748	81168760	81168749	+	High_confidence	7	14	28	1.798048	4.532665	chr14	81168204	81168933	LTR|ERVL|MER21A	+	chr14	81168718	81171714	STRG.104801.1	+	81168718,81169660	81168803,81171714	0.571429
thyroid_gland_female_adult_51_years	chr2	227164620	227164645	227164620	+	High_confidence	52	52	79	5.073064	5.743548	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.645570
thyroid_gland_female_adult_51_years	chr9	92536651	92536675	92536651	-	High_confidence	2	3	8	0.513728	2.521641	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.875000
thyroid_gland_female_adult_51_years	chr4	189722280	189722291	189722290	-	RAMPAGE_only	11	11	28	1.798048	4.458591	chr4	189721949	189722303	LINE|L1|L1M3b	+	chr4	189706119	189719173	STRG.41989.1	-	189706119,189716224	189708489,189719173	0.607143
thyroid_gland_female_adult_51_years	chr10	89556703	89556704	89556703	-	High_confidence	113	129	162	10.402991	6.227889	chr10	89556405	89557345	LTR|ERVL|MER21A	+	chr10	89462502	89556723	STRG.83771.5	-	89462502,89512082,89555881,89556523	89462624,89512143,89555981,89556723	0.506173
thyroid_gland_female_adult_51_years	chr14	77076182	77076194	77076193	-	High_confidence	11	11	41	2.632856	4.887716	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77074104	77076236	STRG.104246.1	-	77074104,77076104	77074598,77076236	0.512195
thyroid_gland_female_adult_51_years	chr7	36661288	36661305	36661288	-	High_confidence	9	9	24	1.541184	4.055958	chr7	36661075	36661436	LTR|ERVL-MaLR|MLT1O	+	chr7	36539681	36661300	STRG.61986.5	-	36539681,36548611,36549438,36576573,36594338,36616379,36618296,36620780,36621709,36623189,36632035,36637850,36659165,36661042	36540491,36548686,36549475,36576656,36594430,36616474,36618345,36620829,36621780,36623250,36632106,36637910,36659265,36661300	0.875000
thyroid_gland_female_adult_51_years	chr19	20362471	20362472	20362471	+	High_confidence	4	4	7	0.449512	2.584963	chr19	20362027	20362578	LTR|ERV1|LTR6A	+	chr19	20362593	20371952	STRG.122324.1	+	20362593,20369177	20362794,20371952	0.857143
thyroid_gland_female_adult_51_years	chr12	104030726	104030727	104030726	+	High_confidence	14	14	19	1.220104	3.905765	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.842105
thyroid_gland_female_adult_51_years	chr6	2990740	2990755	2990748	-	RAMPAGE_only	18	30	73	4.687768	4.796273	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.808219
thyroid_gland_female_adult_51_years	chr5	34244698	34244699	34244698	-	High_confidence	30	31	40	2.568640	3.832299	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34063516	34245279	STRG.42771.7	-	34063516,34175444,34175821,34179012,34182679,34218294,34244615	34064715,34175537,34175957,34179097,34182867,34218450,34245279	0.800000
thyroid_gland_female_adult_51_years	chr7	141737998	141738072	141738057	-	High_confidence	3	3	18	1.155888	3.683542	chr7	141737808	141738038	SINE|Alu|AluJb	-	chr7	141727125	141737996	STRG.66667.1	-	141727125,141727991,141737382	141727642,141728145,141737996	1.000000
thyroid_gland_female_adult_51_years	chrX	3697279	3697310	3697309	-	RAMPAGE_only	4	4	9	0.577944	3.000000	chrX	3697073	3697383	SINE|Alu|AluJb	+	chrX	3604369	3713608	PRKX|ENST00000262848.5	-	3604369,3612176,3615814,3621258,3626418,3641851,3655148,3674597,3713087	3608945,3612325,3615892,3621316,3626514,3641971,3655412,3674766,3713608	0.666667
thyroid_gland_female_adult_51_years	chr16	2760015	2760021	2760017	+	High_confidence	3	5	9	0.577944	2.500000	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	0.888889
thyroid_gland_female_adult_51_years	chr3	43490776	43490823	43490776	-	High_confidence	20	20	129	8.283863	6.161062	chr3	43490741	43491230	LTR|ERV1|MER50	+	chr3	43366358	43491706	STRG.26108.6	-	43366358,43432610,43490683	43366974,43432727,43491706	0.868217
thyroid_gland_female_adult_51_years	chr14	40954688	40954701	40954700	+	High_confidence	4	4	11	0.706376	2.521928	chr14	40948916	40954934	LINE|L1|L1PA3	-	chr14	40954704	40974466	STRG.102570.2	+	40954704,40962789,40974339	40954952,40962842,40974466	0.727273
thyroid_gland_female_adult_51_years	chr22	18149858	18149869	18149868	+	High_confidence	8	8	28	1.798048	3.719295	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.892857
thyroid_gland_female_adult_51_years	chr17	6853899	6853950	6853928	+	High_confidence	13	13	77	4.944632	5.685739	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6895102	ALOX12P2|ENST00000576636.6	+	6853929,6854213,6892002,6894883,6895095	6854060,6854453,6892075,6895006,6895102	0.506494
thyroid_gland_female_adult_51_years	chr4	105970188	105970461	105970409	+	RAMPAGE_only	12	12	133	8.540727	5.358653	chr4	105970389	105970602	LINE|CR1|Plat_L3	+	chr4	105959058	105971670	NPNT|ENST00000504787.1	+	105959058,105970384	105959126,105971670	0.984962
thyroid_gland_female_adult_51_years	chr7	130915857	130915922	130915921	+	High_confidence	35	43	148	9.503967	6.066336	chr7	130915903	130916038	SINE|MIR|MIRc	+	chr7	130915862	130942289	STRG.66191.3	+	130915862,130939239	130916132,130942289	0.783784
thyroid_gland_female_adult_51_years	chr3	187076368	187076486	187076465	+	RAMPAGE_only	4	4	37	2.375992	3.918868	chr3	187076438	187076681	LINE|L2|L2c	-	chr3	187071973	187078551	ST6GAL1|ENST00000470633.1	+	187071973,187073404,187075561	187072947,187074333,187078551	0.945946
thyroid_gland_female_adult_51_years	chr5	67646698	67646709	67646698	-	High_confidence	3	3	7	0.449512	2.584963	chr5	67646558	67646761	SINE|MIR|MIRc	-	chr5	67627138	67646816	STRG.44295.1	-	67627138,67634306,67646605	67633335,67634395,67646816	0.571429
thyroid_gland_female_adult_51_years	chr18	14971762	14971794	14971793	-	High_confidence	7	8	14	0.899024	3.392747	chr18	14971322	14971848	LTR|ERVL-MaLR|MLT1G3	+	chr18	14970799	14972169	STRG.118667.1	-	14970799	14972169	0.785714
thyroid_gland_female_adult_51_years	chr21	33448790	33448823	33448790	-	High_confidence	2	2	10	0.642160	2.503258	chr21	33448485	33448743	SINE|Alu|AluY	-	chr21	33432484	33448964	TMEM50B|ENST00000484377.5	-	33432484,33436882,33439213,33448781	33432802,33436992,33439297,33448964	0.900000
thyroid_gland_female_adult_51_years	chr7	107660111	107660192	107660111	-	RAMPAGE_only	6	6	36	2.311776	4.571861	chr7	107660073	107660151	LINE|CR1|X6A_LINE	+	chr7	107656515	107661798	SLC26A4-AS1|NR_028137.1	-	107656515,107661601	107660206,107661798	0.972222
thyroid_gland_female_adult_51_years	chr1	196404272	196404273	196404272	-	High_confidence	10	10	14	0.899024	2.623517	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196279859	196404277	STRG.9392.4	-	196279859,196282272,196285656,196305233,196315891,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196280988,196282356,196285758,196305345,196316026,196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404277	0.785714
thyroid_gland_female_adult_51_years	chr11	108142497	108142518	108142517	+	RAMPAGE_only	3	3	13	0.834808	3.238901	chr11	108142554	108142845	SINE|Alu|AluJo	+	chr11	108146120	108147588	ACAT1|ENST00000533597.1	+	108146120,108147269	108146359,108147588	1.000000
thyroid_gland_female_adult_51_years	chr17	59619874	59619923	59619894	+	High_confidence	1439	1567	4675	300.209781	5.660581	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.954011
thyroid_gland_female_adult_51_years	chr11	117836274	117836298	117836274	+	RAMPAGE_only	4	4	13	0.834808	3.251629	chr11	117836254	117836523	SINE|Alu|AluJb	-	chr11	117833892	117837655	AP000757.1|ENST00000525260.5	+	117833892,117836268,117837167	117834061,117836502,117837655	0.769231
thyroid_gland_female_adult_51_years	chr4	101669362	101669384	101669362	+	RAMPAGE_only	2	2	8	0.513728	2.521641	chr4	101669401	101672686	LTR|ERV1|MER57-int	+	chr4	101419960	102074812	BANK1|ENST00000504592.5	+	101419960,101422632,101669402,101671072,101721363,101829807,101855034,101862525,101870504,101895304,101917992,102021513,102025200,102029959,102043838,102060210,102063074,102071274,102072344,102073683,102074004	101420097,101422658,101669523,101671161,101721433,101830206,101855189,101862664,101870644,101895410,101918189,102021592,102025509,102030265,102043907,102060389,102063138,102071304,102072400,102073748,102074812	0.500000
thyroid_gland_female_adult_51_years	chr7	6590248	6590286	6590269	+	High_confidence	7	7	27	1.733832	3.776874	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	1.000000
thyroid_gland_female_adult_51_years	chr1	20685285	20685298	20685297	-	High_confidence	4	4	10	0.642160	2.725481	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.800000
thyroid_gland_female_adult_51_years	chr15	85330237	85330238	85330237	-	RAMPAGE_only	14	14	17	1.091672	3.852169	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.529412
thyroid_gland_female_adult_51_years	chr10	72235076	72235077	72235076	+	RAMPAGE_only	8	8	10	0.642160	2.503258	chr10	72234868	72235167	SINE|Alu|AluSz	+	chr10	72216047	72235860	ANAPC16|ENST00000299381.4	+	72216047,72223887,72230365,72233000	72216138,72224056,72230440,72235860	0.700000
thyroid_gland_female_adult_51_years	chr3	135038455	135038463	135038456	+	RAMPAGE_only	3	5	10	0.642160	2.947703	chr3	135038197	135038544	LTR|ERVL-MaLR|MLT1H1	+	chr3	135067531	135259370	EPHB1|ENST00000493838.1	+	135067531,135106447,135132713,135154151,135162017,135165967,135166941,135179859,135192575,135201473,135241147,135248315,135249335,135259011	135067917,135106603,135133049,135154276,135162180,135166076,135167006,135179982,135192823,135201689,135241297,135248509,135249491,135259370	0.700000
thyroid_gland_female_adult_51_years	chr8	30427420	30427431	30427420	+	RAMPAGE_only	6	6	11	0.706376	2.921928	chr8	30427369	30427731	LINE|L2|L2c	+	chr8	30442616	30545591	RBPMS|ENST00000520191.5	+	30442616,30474778,30477798,30479314,30504285,30544493	30442800,30474856,30477837,30479377,30504436,30545591	0.636364
thyroid_gland_female_adult_51_years	chr16	81181319	81181331	81181319	-	High_confidence	3	3	10	0.642160	3.169925	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81100888	81181324	PKD1L2|ENST00000533478.5	-	81100888,81108561,81109193,81112162,81117370,81121585,81123650,81127760,81130458,81133562,81137436,81139507,81141296,81147297,81148139,81149689,81151766,81153960,81154236,81156858,81159623,81160682,81163599,81164643,81165838,81167918,81170942,81174719,81175604,81177806,81179644,81181150	81101284,81108693,81109295,81112373,81117531,81121713,81123784,81128066,81130644,81133700,81137533,81139712,81141525,81147514,81148357,81149889,81151913,81154139,81154338,81157089,81159817,81160905,81163731,81164770,81165963,81168101,81171074,81174914,81175750,81177983,81179786,81181324	0.800000
thyroid_gland_female_adult_51_years	chr12	105041229	105041280	105041237	-	RAMPAGE_only	19	23	71	4.559336	4.425670	chr12	105040817	105042825	LINE|L1|L1MC4	-	chr12	105019626	105053000	STRG.96953.1	-	105019626,105026544,105030323,105031768,105034299,105038102,105039712,105040606,105046709,105046898,105049907,105052089,105052811	105024479,105026744,105030429,105031934,105034398,105038202,105039806,105040694,105046815,105046969,105050058,105052217,105053000	0.943662
thyroid_gland_female_adult_51_years	chr19	20362715	20362716	20362715	+	High_confidence	13	13	19	1.220104	3.308271	chr19	20362580	20362814	LTR|ERV1|HERVS71-int	+	chr19	20362593	20371952	STRG.122324.1	+	20362593,20369177	20362794,20371952	0.947368
thyroid_gland_female_adult_51_years	chr22	49925453	49925479	49925453	+	RAMPAGE_only	4	6	13	0.834808	3.392747	chr22	49925493	49925572	LINE|CR1|L3b	+	chr22	49923209	49927528	CRELD2|ENST00000487969.1	+	49923209,49927254	49925557,49927528	0.923077
thyroid_gland_female_adult_51_years	chr15	55514003	55514014	55514013	-	RAMPAGE_only	13	17	30	1.926480	4.573557	chr15	55513405	55516274	LTR|ERV1|HERVE_a-int	-	chr15	55359017	55515365	STRG.107980.8	-	55359017,55365187,55371792,55376948,55378299,55385599,55389364,55432496,55434904,55439471,55450221,55491122,55497711,55498206	55360944,55365309,55372044,55377150,55378376,55385714,55389433,55432602,55435058,55439581,55450367,55491256,55497810,55515365	1.000000
thyroid_gland_female_adult_51_years	chr15	74174534	74174572	74174571	+	High_confidence	11	11	50	3.210800	3.850658	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	0.980000
thyroid_gland_female_adult_51_years	chr17	35432499	35432536	35432533	-	High_confidence	4	4	15	0.963240	3.235926	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.733333
thyroid_gland_female_adult_51_years	chr2	54709664	54709710	54709664	+	High_confidence	7	8	28	1.798048	4.324863	chr2	54708539	54710604	LTR|ERV1|MER52D	+	chr2	54709653	54718386	STRG.14790.1	+	54709653,54711498,54717406	54710612,54711541,54718386	0.964286
thyroid_gland_female_adult_51_years	chr1	33021381	33021399	33021393	-	High_confidence	5	6	25	1.605400	3.490602	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010518	33021690	STRG.1498.5	-	33010518,33014521,33021366,33021592	33013402,33014594,33021461,33021690	0.960000
thyroid_gland_female_adult_51_years	chr8	129752862	129752912	129752905	-	High_confidence	10	10	31	1.990696	4.640224	chr8	129752564	129757710	LINE|L1|L1MA2	+	chr8	129748195	129752886	GSDMC|ENST00000522273.5	-	129748195,129749451,129749989,129750430,129751541,129751861,129752105,129752697	129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752886	0.806452
thyroid_gland_female_adult_51_years	chr19	20247422	20247423	20247422	+	High_confidence	17	17	22	1.412752	3.232102	chr19	20246144	20248488	LTR|ERV1|HERVE_a-int	+	chr19	20247569	20259360	STRG.122316.2	+	20247569,20248281,20249057,20250200,20257226,20257642	20247699,20248447,20249184,20250295,20257430,20259360	0.954545
thyroid_gland_female_adult_51_years	chr5	180830955	180831032	180831031	+	High_confidence	25	25	168	10.788287	6.382820	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831026	180834779	LINC00847|ENST00000508309.1	+	180831026,180834311	180831229,180834779	0.815476
thyroid_gland_female_adult_51_years	chr5	109383422	109383455	109383422	-	High_confidence	2	2	11	0.706376	2.846439	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.909091
thyroid_gland_female_adult_51_years	chr11	64226142	64226180	64226158	-	High_confidence	133	135	598	38.401166	6.996253	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.974916
thyroid_gland_female_adult_51_years	chr6	26956544	26956545	26956544	-	High_confidence	7	7	11	0.706376	2.846439	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.909091
thyroid_gland_female_adult_51_years	chr17	70100660	70100719	70100660	+	RAMPAGE_only	5	5	30	1.926480	4.423252	chr17	70100541	70100738	SINE|MIR|MIR	-	chr17	70096639	70133604	KCNJ16|ENST00000586462.1	+	70096639,70131994	70096926,70133604	0.833333
thyroid_gland_female_adult_51_years	chr12	9065173	9065181	9065173	+	High_confidence	6	6	13	0.834808	2.777363	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.692308
thyroid_gland_female_adult_51_years	chr5	55982752	55982800	55982799	-	High_confidence	3	3	10	0.642160	2.721928	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	1.000000
thyroid_gland_female_adult_51_years	chr20	45833293	45833308	45833305	-	High_confidence	5	5	19	1.220104	3.614369	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823316	45833320	STRG.126879.1	-	45823316,45823990,45824291,45824494,45824782,45833250	45823379,45824127,45824406,45824638,45824834,45833320	0.947368
thyroid_gland_female_adult_51_years	chr18	26741774	26741813	26741812	-	High_confidence	150	217	451	28.961414	6.852543	chr18	26741679	26742001	LTR|ERVL-MaLR|MLT1L	+	chr18	26706763	26741822	STRG.118928.16	-	26706763,26732457,26741722	26729251,26732580,26741822	0.767184
thyroid_gland_female_adult_51_years	chr2	119715603	119715609	119715603	+	High_confidence	14	14	28	1.798048	4.180451	chr2	119715481	119715735	LINE|L2|L2b	+	chr2	119715611	119716846	STRG.17575.2	+	119715611	119716846	0.714286
thyroid_gland_female_adult_51_years	chr11	119046423	119046464	119046458	-	RAMPAGE_only	5	6	26	1.669616	4.003856	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057024	STRG.91444.3	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049017,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049203,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054625,119055060,119055339,119055571,119055843,119056167,119057024	0.923077
thyroid_gland_female_adult_51_years	chr7	134549109	134549114	134549109	+	High_confidence	8	9	18	1.155888	3.616875	chr7	134549070	134551552	LTR|ERV1|HERVS71-int	+	chr7	134549096	134579840	AKR1B15|NM_001080538.2	+	134549096,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579840	0.722222
thyroid_gland_female_adult_51_years	chr19	20423688	20423704	20423703	-	High_confidence	39	52	120	7.705920	5.624338	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20423716	STRG.122325.8	-	20398657,20408949,20423480	20399038,20409956,20423716	0.666667
thyroid_gland_female_adult_51_years	chr12	50931108	50931259	50931108	+	RAMPAGE_only	6	6	43	2.761288	4.711035	chr12	50931107	50931191	LTR|ERV1|LTR9A1	-	chr12	50924750	50932517	METTL7A|ENST00000332160.4	+	50924750,50929913	50925536,50932517	1.000000
thyroid_gland_female_adult_51_years	chr5	34244811	34244816	34244815	-	High_confidence	10	16	23	1.476968	3.522572	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34063516	34245279	STRG.42771.7	-	34063516,34175444,34175821,34179012,34182679,34218294,34244615	34064715,34175537,34175957,34179097,34182867,34218450,34245279	0.826087
thyroid_gland_female_adult_51_years	chr20	3873226	3873237	3873226	+	RAMPAGE_only	2	2	6	0.385296	2.584963	chr20	3873250	3873549	SINE|Alu|AluSz	+	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	1.000000
thyroid_gland_female_adult_51_years	chr19	51350356	51350382	51350356	-	RAMPAGE_only	2	2	12	0.770592	2.918296	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
thyroid_gland_female_adult_51_years	chr8	119875394	119875416	119875415	+	RAMPAGE_only	7	11	19	1.220104	3.725481	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.578947
thyroid_gland_female_adult_51_years	chr14	52008300	52008301	52008300	-	High_confidence	8	8	10	0.642160	2.725481	chr14	52008011	52008545	LTR|ERVL-MaLR|MLT1F2	+	chr14	52005303	52008106	NID2|ENST00000555310.1	-	52005303,52005736,52006536,52007809	52005496,52005849,52006660,52008106	0.900000
thyroid_gland_female_adult_51_years	chr17	19386333	19386360	19386333	-	High_confidence	4	4	15	0.963240	3.093069	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.933333
thyroid_gland_female_adult_51_years	chr3	164451245	164451246	164451245	+	High_confidence	50	58	70	4.495120	5.370859	chr3	164449656	164452200	LINE|L1|L1PA15	-	chr3	164451286	164623087	STRG.32113.1	+	164451286,164532285,164608991,164619324	164451535,164532393,164609068,164623087	0.600000
thyroid_gland_female_adult_51_years	chr2	179043807	179043808	179043807	-	RAMPAGE_only	9	9	10	0.642160	2.947703	chr2	179042647	179044414	LINE|L1|L1PA10	+	chr2	178915310	179047408	STRG.19923.6	-	178915310,178918712,178944534,178961229,178975056,178978483,179047283	178915807,178918907,178944651,178961483,178975165,178978675,179047408	0.800000
thyroid_gland_female_adult_53_years	chr6	158665253	158665258	158665253	+	RAMPAGE_only	6	6	14	1.021019	2.565448	chr6	158665118	158665308	SINE|MIR|MIRb	-	chr6	158663402	158764876	SYTL3|NM_001318745.1	+	158663402,158665394,158682924,158707229,158708321,158713799,158718086,158725502,158745479,158751927,158757210,158760639,158762075,158763303,158764494	158663625,158665613,158682989,158707281,158708391,158713878,158718211,158725637,158745658,158752030,158757381,158760745,158762178,158763509,158764876	0.928571
thyroid_gland_female_adult_53_years	chr3	44439896	44439917	44439896	-	High_confidence	3	3	10	0.729299	2.503258	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421126	44439917	C3orf86|ENST00000636468.1	-	44421126,44439796	44421813,44439917	0.500000
thyroid_gland_female_adult_53_years	chr6	140898421	140898430	140898421	-	High_confidence	7	9	15	1.093949	3.589898	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140575787	140898381	AL035446.2|ENST00000650553.1	-	140575787,140620907,140651477,140816131,140898187	140576557,140620995,140651561,140816230,140898381	0.600000
thyroid_gland_female_adult_53_years	chr9	68975842	68975855	68975842	-	High_confidence	16	16	44	3.208916	4.851366	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.613636
thyroid_gland_female_adult_53_years	chr17	77127869	77127873	77127869	+	High_confidence	7	7	12	0.875159	2.913977	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.750000
thyroid_gland_female_adult_53_years	chr2	96303166	96303280	96303177	-	RAMPAGE_only	8	9	46	3.354775	4.290708	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.934783
thyroid_gland_female_adult_53_years	chr14	81166251	81166336	81166335	-	High_confidence	34	36	135	9.845537	5.006775	chr14	81166191	81166439	LTR|ERVL-MaLR|MLT1J2	+	chr14	81118102	81166296	STRG.110957.6	-	81118102,81142200,81165192,81166112	81142168,81154131,81165381,81166296	0.903704
thyroid_gland_female_adult_53_years	chr6	79631273	79631329	79631302	+	High_confidence	242	243	822	59.948379	6.882499	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.975669
thyroid_gland_female_adult_53_years	chr10	17031902	17031931	17031930	+	High_confidence	47	48	123	8.970378	5.165803	chr10	17031877	17032057	LINE|CR1|L3	+	chr10	17031889	17033073	STRG.84529.1	+	17031889	17033073	0.975610
thyroid_gland_female_adult_53_years	chr2	229232024	229232054	229232053	-	High_confidence	3	3	8	0.583439	2.500000	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.625000
thyroid_gland_female_adult_53_years	chr10	30999506	30999520	30999519	-	High_confidence	7	7	17	1.239808	3.625000	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.529412
thyroid_gland_female_adult_53_years	chr19	40280802	40280811	40280802	-	High_confidence	6	6	15	1.093949	2.840224	chr19	40280545	40281038	LINE|L2|L2a	+	chr19	40242039	40280832	AKT2|ENST00000486368.6	-	40242039,40242533,40255157,40256925,40265221,40280781	40242069,40242687,40255269,40257054,40265351,40280832	0.866667
thyroid_gland_female_adult_53_years	chr22	50541367	50541368	50541367	+	RAMPAGE_only	4	4	7	0.510509	2.521641	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	1.000000
thyroid_gland_female_adult_53_years	chr6	156310926	156310946	156310940	+	High_confidence	19	22	63	4.594584	5.262684	chr6	156310778	156311273	LINE|L2|L2a	-	chr6	156311641	156352993	STRG.60878.1	+	156311641,156350520,156351850,156352668	156311760,156350710,156352020,156352993	0.571429
thyroid_gland_female_adult_53_years	chr1	20685285	20685298	20685297	-	High_confidence	6	7	13	0.948089	3.418296	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.923077
thyroid_gland_female_adult_53_years	chr2	107529599	107529623	107529619	+	High_confidence	3	3	10	0.729299	2.721928	chr2	107529145	107529729	LTR|ERV1|LTR9	-	chr2	107529486	107538536	STRG.18205.2	+	107529486	107538536	1.000000
thyroid_gland_female_adult_53_years	chr4	102431237	102431260	102431237	-	High_confidence	3	3	15	1.093949	3.272906	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.933333
thyroid_gland_female_adult_53_years	chr11	19430971	19430989	19430988	+	RAMPAGE_only	5	6	10	0.729299	3.121928	chr11	19430879	19431025	LTR|ERV1|LTR78B	-	chr11	19425728	19443417	STRG.90990.1	+	19425728	19443417	0.900000
thyroid_gland_female_adult_53_years	chr11	76669907	76669969	76669907	-	High_confidence	6	6	24	1.750318	4.186704	chr11	76669703	76669860	SINE|MIR|MIRb	-	chr11	76657523	76670000	LRRC32|NM_005512.2	-	76657523,76665870,76669761	76661508,76665958,76670000	0.750000
thyroid_gland_female_adult_53_years	chr9	39810023	39810084	39810033	-	High_confidence	34	34	100	7.292990	5.514527	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.610000
thyroid_gland_female_adult_53_years	chr3	101692162	101692172	101692171	+	RAMPAGE_only	3	5	11	0.802229	2.921928	chr3	101691892	101692861	LTR|ERVK|LTR5_Hs	+	chr3	101676474	101700930	STRG.30262.2	+	101676474,101684894,101685848,101692802	101677272,101685029,101687389,101700930	0.818182
thyroid_gland_female_adult_53_years	chr10	122127024	122127025	122127024	+	High_confidence	114	114	142	10.356046	5.396085	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.669014
thyroid_gland_female_adult_53_years	chr12	12927723	12927741	12927733	+	High_confidence	92	92	197	14.367191	6.543588	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.558376
thyroid_gland_female_adult_53_years	chr19	20362715	20362726	20362725	+	High_confidence	12	13	21	1.531528	3.721928	chr19	20362580	20362814	LTR|ERV1|HERVS71-int	+	chr19	20362555	20371950	STRG.129725.1	+	20362555,20369177	20362794,20371950	0.857143
thyroid_gland_female_adult_53_years	chr12	4580863	4580881	4580863	+	RAMPAGE_only	6	6	23	1.677388	3.390805	chr12	4580796	4580870	LINE|RTE-X|L4_C_Mam	+	chr12	4590071	4597173	DYRK4|NR_104115.1	+	4590071,4590329,4591159,4593001,4596148,4596588	4590207,4590554,4591298,4593165,4596445,4597173	0.956522
thyroid_gland_female_adult_53_years	chr3	146222303	146222324	146222303	-	High_confidence	5	6	9	0.656369	2.503258	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146206586	146222371	PLSCR4|ENST00000498625.1	-	146206586,146220814,146222064	146206761,146220925,146222371	0.888889
thyroid_gland_female_adult_53_years	chr2	119730563	119730564	119730563	-	RAMPAGE_only	98	101	134	9.772607	3.899022	chr2	119730532	119730650	DNA|hAT-Charlie|MER5A1	-	chr2	119723298	119724583	STRG.18611.1	-	119723298	119724583	0.641791
thyroid_gland_female_adult_53_years	chr3	134485415	134485471	134485470	-	High_confidence	13	14	69	5.032163	5.190117	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.884058
thyroid_gland_female_adult_53_years	chr15	65300634	65300635	65300634	-	High_confidence	15	15	15	1.093949	3.506891	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65266576	65300618	PARP16|ENST00000558873.1	-	65266576,65270934,65282546,65300196	65266768,65271072,65282632,65300618	0.866667
thyroid_gland_female_adult_53_years	chr10	16467132	16467150	16467149	+	High_confidence	3	4	7	0.510509	2.521641	chr10	16467096	16467427	DNA|TcMar-Tigger|MER44A	+	chr10	16466382	16513737	STRG.84515.4	+	16466382,16484336,16486351,16505019,16511045	16467210,16484816,16486617,16505160,16513737	1.000000
thyroid_gland_female_adult_53_years	chr10	53030022	53030102	53030023	-	High_confidence	32	61	199	14.513050	6.066284	chr10	53029943	53030661	LTR|ERV1|LTR30	-	chr10	52972033	53030093	STRG.85918.1	-	52972033,52974664,53022823,53029910	52973690,52975813,53022960,53030093	0.572864
thyroid_gland_female_adult_53_years	chr15	40375903	40375939	40375926	-	High_confidence	12	12	37	2.698406	4.493133	chr15	40375715	40376016	DNA|hAT-Charlie|Charlie2a	+	chr15	40358477	40375926	STRG.113783.9	-	40358477,40370882,40371838,40375622	40369527,40371017,40372094,40375926	0.918919
thyroid_gland_female_adult_53_years	chr1	33021381	33021456	33021455	-	RAMPAGE_only	9	10	29	2.114967	4.162295	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.896552
thyroid_gland_female_adult_53_years	chr1	153967497	153967504	153967497	+	High_confidence	12	12	19	1.385668	3.080501	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153969924	STRG.7857.6	+	153967533,153968521,153968929,153969333	153967884,153968699,153969176,153969924	0.947368
thyroid_gland_female_adult_53_years	chr5	177883461	177883483	177883470	+	RAMPAGE_only	24	27	113	8.241079	5.912840	chr5	177883451	177883608	SINE|MIR|MIR	+	chr5	177875521	177884272	AC106795.1|ENST00000506672.5	+	177875521,177876531,177878643,177882368,177882651,177883666	177875860,177876688,177878848,177882530,177882752,177884272	0.584071
thyroid_gland_female_adult_53_years	chr3	129559620	129559624	129559620	-	High_confidence	4	4	8	0.583439	2.750000	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129560414	STRG.31338.3	-	129555213,129555997,129556616,129557082,129558427,129559619,129560329	129555928,129556428,129556691,129557223,129558575,129559783,129560414	1.000000
thyroid_gland_female_adult_53_years	chr19	7642274	7642307	7642274	+	High_confidence	2	2	10	0.729299	3.121928	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.900000
thyroid_gland_female_adult_53_years	chr15	80059918	80059933	80059918	+	High_confidence	134	156	316	23.045849	4.993307	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.974684
thyroid_gland_female_adult_53_years	chr5	140655869	140655987	140655986	+	RAMPAGE_only	7	7	64	4.667514	4.864515	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.984375
thyroid_gland_female_adult_53_years	chr4	128570480	128570493	128570487	-	High_confidence	13	13	34	2.479617	4.222594	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.970588
thyroid_gland_female_adult_53_years	chr11	3380960	3380961	3380960	+	High_confidence	12	12	12	0.875159	3.251629	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.666667
thyroid_gland_female_adult_53_years	chr12	109112908	109112928	109112927	+	RAMPAGE_only	5	5	12	0.875159	3.095795	chr12	109112836	109113146	DNA|hAT-Charlie|MER58B	-	chr12	109111217	109125594	AC007637.1|ENST00000541704.2	+	109111217,109113094,109125260	109111472,109113415,109125594	0.833333
thyroid_gland_female_adult_53_years	chr4	25249996	25250071	25250070	-	High_confidence	4	4	22	1.604458	3.481715	chr4	25248810	25250216	Retroposon|SVA|SVA_B	-	chr4	25249124	25250049	STRG.37054.1	-	25249124	25250049	0.909091
thyroid_gland_female_adult_53_years	chr18	8376048	8376200	8376199	+	RAMPAGE_only	10	10	45	3.281846	4.641527	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8370932	8379313	PTPRM|ENST00000583153.2	+	8370932,8371759,8376045,8376461,8378264,8379166	8371006,8371810,8376200,8376597,8378414,8379313	0.888889
thyroid_gland_female_adult_53_years	chr11	64226142	64226180	64226158	-	High_confidence	70	74	296	21.587251	6.997569	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.966216
thyroid_gland_female_adult_53_years	chr14	73463605	73463630	73463629	-	High_confidence	3	3	10	0.729299	2.921928	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73460934	73463618	AC005280.2|ENST00000557577.1	-	73460934,73462528,73463474	73461264,73462689,73463618	0.700000
thyroid_gland_female_adult_53_years	chr19	20358162	20358163	20358162	+	High_confidence	806	836	892	65.053472	6.383716	chr19	20357990	20358269	LTR|ERVL|LTR66	+	chr19	20358162	20371950	STRG.129725.2	+	20358162,20369177	20358333,20371950	0.914798
thyroid_gland_female_adult_53_years	chr2	1484231	1484339	1484245	+	High_confidence	7	7	48	3.500635	4.228308	chr2	1484143	1484258	SINE|MIR|MIRb	-	chr2	1484662	1542660	TPO|ENST00000446278.5	+	1484662,1493801,1495988,1496594,1503947,1516882,1542420	1484854,1494039,1496197,1496765,1504079,1516982,1542660	0.687500
thyroid_gland_female_adult_53_years	chr15	65642904	65642951	65642932	+	High_confidence	7	10	63	4.594584	5.323238	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	0.984127
thyroid_gland_female_adult_53_years	chr2	24328516	24328572	24328553	-	High_confidence	4	5	19	1.385668	3.576618	chr2	24328467	24328762	SINE|Alu|AluSz6	-	chr2	24202866	24328118	ITSN2|ENST00000622089.4	-	24202866,24204244,24205213,24208236,24209099,24209817,24210779,24212649,24216048,24217906,24220944,24246128,24246796,24248628,24248836,24252344,24254366,24257887,24261105,24261560,24270670,24271765,24275712,24286211,24293687,24295663,24298664,24299908,24301153,24301964,24303798,24308616,24310283,24310488,24312211,24313459,24315131,24328051,24328103	24203783,24204418,24205297,24208319,24209221,24210033,24210947,24212748,24216232,24218013,24221066,24246320,24246893,24248750,24248882,24252511,24254431,24258093,24261250,24261742,24270768,24271941,24275849,24286351,24293775,24295804,24298814,24300171,24301239,24302102,24303862,24308756,24310380,24310692,24312375,24313523,24315224,24328100,24328118	0.842105
thyroid_gland_female_adult_53_years	chr2	218287279	218287280	218287279	-	High_confidence	5	5	7	0.510509	2.584963	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.571429
thyroid_gland_female_adult_53_years	chr2	182030747	182030774	182030751	+	High_confidence	4	4	20	1.458598	3.391893	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.800000
thyroid_gland_female_adult_53_years	chr2	169187982	169188053	169187982	-	High_confidence	2	3	16	1.166878	3.640224	chr2	169187889	169187969	DNA|TcMar-Tigger|Tigger19b	-	chr2	169128435	169188197	LRP2|ENST00000649153.1	-	169128435,169129012,169132573,169137391,169138576,169139250,169139542,169142673,169145746,169146738,169150897,169152798,169154459,169156273,169157370,169162471,169165931,169168538,169169701,169170550,169172014,169173095,169173918,169175192,169176410,169177802,169181447,169182166,169185502,169187969	169128830,169129084,169132681,169137493,169138706,169139371,169139610,169142793,169145923,169146959,169151026,169152964,169154603,169156405,169157502,169162600,169166054,169168676,169169818,169170667,169172134,169173224,169174164,169175389,169176588,169178026,169181618,169182319,169186019,169188197	0.937500
thyroid_gland_female_adult_53_years	chr11	17208517	17208564	17208563	+	High_confidence	7	7	17	1.239808	3.734522	chr11	17208523	17208605	SINE|MIR|MIRc	-	chr11	17208597	17209807	STRG.90813.1	+	17208597	17209807	0.588235
thyroid_gland_female_adult_53_years	chr19	16877318	16877348	16877318	+	High_confidence	2	2	7	0.510509	2.521641	chr19	16877129	16877321	LTR|ERVL-MaLR|MLT1C	-	chr19	16877161	16878942	SIN3B|ENST00000594235.1	+	16877161,16877544,16878182,16878496	16877335,16877639,16878390,16878942	0.714286
thyroid_gland_female_adult_53_years	chr4	99906530	99906557	99906530	-	High_confidence	2	2	11	0.802229	2.721928	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.909091
thyroid_gland_female_adult_53_years	chrX	23692227	23692231	23692227	-	High_confidence	54	62	80	5.834392	5.178599	chrX	23691675	23692316	LTR|ERVL|MER21A	-	chrX	23659375	23692217	STRG.141448.1	-	23659375,23692032	23659627,23692217	0.500000
thyroid_gland_female_adult_53_years	chr2	174410277	174410372	174410286	+	High_confidence	6	8	34	2.479617	3.911752	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.823529
thyroid_gland_female_adult_53_years	chr19	20247568	20247607	20247570	+	High_confidence	74	96	277	20.201583	6.413998	chr19	20246144	20248488	LTR|ERV1|HERVE_a-int	+	chr19	20247421	20258319	STRG.129718.10	+	20247421,20250200,20257250,20257642	20249184,20250301,20257430,20258319	0.989170
thyroid_gland_female_adult_53_years	chr12	47753900	47753950	47753949	+	RAMPAGE_only	3	4	18	1.312738	2.866587	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47758577	47780307	SLC48A1|ENST00000547002.5	+	47758577,47760215,47772169,47779027,47780144	47758660,47760401,47772320,47779195,47780307	0.777778
thyroid_gland_female_adult_53_years	chr2	29114170	29114174	29114173	+	High_confidence	8	8	17	1.239808	3.175123	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.941176
thyroid_gland_female_adult_53_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	9	10	10	0.729299	2.947703	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.900000
thyroid_gland_female_adult_53_years	chr1	196715644	196715676	196715644	+	RAMPAGE_only	3	3	10	0.729299	2.521928	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	1.000000
thyroid_gland_female_adult_53_years	chr16	72627719	72627740	72627719	-	High_confidence	3	3	7	0.510509	2.521641	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72479750	72627686	LINC01572|ENST00000563770.5	-	72479750,72491903,72523331,72540577,72555264,72570434,72617182,72627534	72479790,72491966,72523415,72540611,72555326,72570515,72617234,72627686	0.714286
thyroid_gland_female_adult_53_years	chr9	20658568	20658619	20658607	+	High_confidence	13	19	54	3.938215	4.338345	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658329	20995948	STRG.77284.4	+	20658329,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	0.833333
thyroid_gland_female_adult_53_years	chr8	109581075	109581093	109581081	-	High_confidence	6	6	20	1.458598	2.670340	chr8	109580602	109581257	LINE|L2|L2c	+	chr8	109575974	109581058	SYBU|ENST00000527707.5	-	109575974,109577867,109579798,109580878	109576013,109578017,109580002,109581058	0.950000
thyroid_gland_female_adult_53_years	chr17	47067498	47067518	47067498	-	High_confidence	295	318	1197	87.297092	5.902351	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.939014
thyroid_gland_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	11	11	11	0.802229	3.095795	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
thyroid_gland_female_adult_53_years	chr3	48979519	48979550	48979519	+	RAMPAGE_only	2	2	10	0.729299	2.503258	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.900000
thyroid_gland_female_adult_53_years	chr21	28090397	28090410	28090397	+	High_confidence	7	7	16	1.166878	2.573557	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.937500
thyroid_gland_female_adult_53_years	chr15	62753449	62753456	62753451	+	RAMPAGE_only	3	5	9	0.656369	2.947703	chr15	62753239	62753497	LTR|ERVL-MaLR|MLT1L	-	chr15	62758589	62784838	TLN2|ENST00000472902.1	+	62758589,62761680,62762271,62763562,62766320,62770963,62776763,62781139,62783770	62758659,62761821,62762453,62763695,62766422,62771134,62776910,62781241,62784838	0.555556
thyroid_gland_female_adult_53_years	chr6	169182801	169182833	169182832	-	High_confidence	3	3	11	0.802229	3.095795	chr6	169182607	169182961	LTR|ERVL-MaLR|THE1A	-	chr6	169175303	169182740	LINC02544|ENST00000564830.2	-	169175303,169179275,169182683	169175671,169179394,169182740	0.909091
thyroid_gland_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	5462	5627	15549	1133.987033	7.411381	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.508714
thyroid_gland_female_adult_53_years	chr5	34244698	34244699	34244698	-	High_confidence	17	18	25	1.823248	3.543465	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34173730	34244885	STRG.44728.8	-	34173730,34175821,34179012,34182679,34218294,34219916,34244615	34175537,34175957,34179097,34182867,34218450,34219950,34244885	0.760000
thyroid_gland_female_adult_53_years	chr2	105329670	105329674	105329673	-	High_confidence	4	4	10	0.729299	2.921928	chr2	105329666	105329774	LTR|ERV1|LTR2752	-	chr2	105264389	105329714	TGFBRAP1|NM_001142621.2	-	105264389,105269271,105272854,105273543,105275559,105277613,105280381,105284315,105296355,105298510,105307613,105329624	105267559,105269705,105273014,105273690,105275703,105277671,105280723,105284398,105296510,105298705,105308315,105329714	1.000000
thyroid_gland_female_adult_53_years	chr2	113237202	113237208	113237205	-	High_confidence	6	7	16	1.166878	3.189898	chr2	113237106	113237236	SINE|MIR|MIR	-	chr2	113235344	113236929	PAX8|ENST00000554352.1	-	113235344,113236600	113235582,113236929	0.687500
thyroid_gland_female_adult_53_years	chr7	87040212	87040223	87040212	-	RAMPAGE_only	8	9	29	2.114967	4.349192	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.689655
thyroid_gland_female_adult_53_years	chr1	53249529	53249558	53249529	-	RAMPAGE_only	5	6	13	0.948089	2.565448	chr1	53249444	53249560	LINE|L2|L2b	+	chr1	53246567	53328014	STRG.2944.9	-	53246567,53250689,53255116,53257239,53258318,53260463,53262067,53262445,53264168,53266472,53271027,53271226,53275630,53276691,53280586,53289566,53326872,53327788	53249556,53250862,53255185,53257464,53258471,53260605,53262207,53262564,53264396,53266647,53271153,53271346,53275753,53277078,53280715,53289689,53326992,53328014	1.000000
thyroid_gland_female_adult_53_years	chr6	43013375	43013393	43013392	-	High_confidence	13	13	24	1.750318	4.136842	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
thyroid_gland_female_adult_53_years	chr1	19344364	19344412	19344364	-	RAMPAGE_only	9	9	39	2.844266	4.239878	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.948718
thyroid_gland_female_adult_53_years	chr10	102449836	102449870	102449836	+	High_confidence	5	5	26	1.896177	4.315824	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449838	102456292	STRG.88306.1	+	102449838,102450186,102451398,102452065,102455336	102450022,102450330,102451555,102452187,102456292	1.000000
thyroid_gland_female_adult_53_years	chr11	64242499	64242547	64242546	+	High_confidence	10	11	53	3.865285	4.717374	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.981132
thyroid_gland_female_adult_53_years	chr11	57794023	57794070	57794023	+	RAMPAGE_only	2	3	10	0.729299	3.169925	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.900000
thyroid_gland_female_adult_53_years	chr1	21013074	21013133	21013102	-	RAMPAGE_only	8	8	30	2.187897	4.186569	chr1	21012696	21013221	LINE|L1|L1PBa	+	chr1	20806469	21050994	EIF4G3|ENST00000264211.12	-	20806469,20810737,20813157,20817391,20825099,20827616,20829146,20840855,20849414,20851257,20853559,20854977,20857402,20860384,20862227,20864475,20865115,20879322,20886200,20893516,20895367,20899696,20904882,20941490,20950002,20969473,20973001,20980333,20981047,21002712,21050865	20807500,20810884,20813239,20817538,20825198,20827698,20829272,20841028,20849530,20851478,20853677,20855071,20857497,20860517,20862332,20864712,20865262,20879520,20886371,20893636,20895501,20899943,20904971,20942330,20950111,20969596,20973099,20980448,20981227,21002808,21050994	0.866667
thyroid_gland_female_adult_53_years	chr3	187024613	187024661	187024626	+	High_confidence	4	4	16	1.166878	3.106891	chr3	187024583	187024927	LINE|L1|L1MC5a	+	chr3	187024687	187042927	ST6GAL1|ENST00000416235.5	+	187024687,187038741,187042653	187024858,187038873,187042927	0.812500
thyroid_gland_female_adult_53_years	chr19	51795156	51795187	51795186	+	High_confidence	7	7	20	1.458598	3.784184	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.950000
thyroid_gland_female_adult_53_years	chr11	108923686	108923741	108923686	+	RAMPAGE_only	8	8	36	2.625476	4.261725	chr11	108923524	108923886	LINE|L2|L2c	-	chr11	108929518	108940925	DDX10|ENST00000534221.1	+	108929518,108940245	108929708,108940925	0.972222
thyroid_gland_female_adult_53_years	chr2	48722595	48722598	48722595	+	RAMPAGE_only	10	10	17	1.239808	3.690117	chr2	48722394	48722813	LTR|ERVL-MaLR|MSTA	+	chr2	48529924	48776517	STON1-GTF2A1L|ENST00000402114.6	+	48529924,48580586,48591652,48620850,48621166,48642401,48645032,48646452,48669721,48671590,48776279	48529988,48582563,48591855,48620952,48621290,48642457,48645117,48647042,48669982,48671680,48776517	0.705882
thyroid_gland_female_adult_53_years	chrX	5726193	5726194	5726193	-	High_confidence	11	11	17	1.239808	3.690117	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.529412
thyroid_gland_female_adult_53_years	chr9	72363483	72363522	72363483	-	High_confidence	2	2	14	1.021019	3.378783	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.928571
thyroid_gland_female_adult_53_years	chr1	226542738	226542739	226542738	-	RAMPAGE_only	22	22	29	2.114967	4.185230	chr1	226542461	226543018	LTR|ERVL|LTR66	-	chr1	226538180	226538600	STRG.11295.1	-	226538180	226538600	0.620690
thyroid_gland_female_adult_53_years	chr8	80485592	80485619	80485592	+	High_confidence	6	6	17	1.239808	3.292770	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.941176
thyroid_gland_female_adult_53_years	chr3	139344537	139344579	139344547	+	High_confidence	41	41	116	8.459869	4.884034	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.905172
thyroid_gland_female_adult_53_years	chr22	23527443	23527507	23527506	+	High_confidence	9	9	28	2.042037	4.021641	chr22	23527401	23527785	LINE|L2|L2b	-	chr22	23527441	23547797	STRG.138256.2	+	23527441,23536971,23538760,23546485	23527564,23537136,23544306,23547797	0.964286
thyroid_gland_female_adult_53_years	chr10	63594825	63594847	63594825	+	RAMPAGE_only	3	4	11	0.802229	3.121928	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	0.909091
thyroid_gland_female_adult_53_years	chr8	27977120	27977126	27977125	-	High_confidence	19	21	38	2.771336	4.347986	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27869881	27977115	STRG.72417.2	-	27869881,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977115	0.842105
thyroid_gland_female_adult_53_years	chr18	47827702	47827750	47827728	+	High_confidence	99	102	597	43.539151	6.437267	chr18	47827452	47828948	Retroposon|SVA|SVA_B	+	chr18	47827700	47836679	STRG.127066.1	+	47827700,47834840,47836345	47828182,47836177,47836679	0.994975
thyroid_gland_female_adult_53_years	chr19	19957988	19957992	19957988	+	High_confidence	30	30	61	4.448724	4.977317	chr19	19957700	19958100	LTR|ERVL|LTR66	+	chr19	19958005	19964881	STRG.129723.1	+	19958005,19958488,19963118	19958144,19958554,19964881	0.852459
thyroid_gland_female_adult_53_years	chr22	42721166	42721167	42721166	-	High_confidence	13	13	13	0.948089	3.546594	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	1.000000
thyroid_gland_female_adult_53_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	14	14	31	2.260827	3.760017	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	1.000000
thyroid_gland_female_adult_53_years	chr9	132319563	132319566	132319563	-	RAMPAGE_only	2	2	7	0.510509	2.584963	chr9	132319064	132319644	LINE|L2|L2a	+	chr9	132261355	132311856	SETX|ENST00000436441.5	-	132261355,132269402,132269614,132271709,132275255,132277059,132278069,132281466,132283263,132286422,132288235,132288549,132295871,132296886,132298079,132300629,132311756	132264985,132269489,132269702,132271808,132275420,132277152,132278257,132281574,132283413,132286494,132288351,132288651,132296028,132297054,132298312,132300803,132311856	0.571429
thyroid_gland_female_adult_53_years	chr19	35899314	35899337	35899336	-	High_confidence	4	4	15	1.093949	3.235926	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35887951	35899737	NFKBID|NM_001321831.1	-	35887951,35889889,35890373,35895979,35896217,35896391,35896725,35896912,35897650,35898471,35898718,35899706	35888612,35890054,35890490,35896128,35896269,35896538,35896831,35897103,35897838,35898532,35898822,35899737	0.866667
thyroid_gland_female_adult_53_years	chr11	111097295	111097352	111097343	-	High_confidence	4	4	15	1.093949	2.789898	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	1.000000
thyroid_gland_female_adult_53_years	chr12	6016538	6016562	6016538	-	RAMPAGE_only	3	4	12	0.875159	2.663533	chr12	6016356	6016502	SINE|MIR|MIR3	-	chr12	5948873	6124675	VWF|ENST00000261405.9	-	5948873,5949785,5951843,5952390,5953495,5967485,5968126,5969210,5971598,5976110,5981785,5983149,5985044,5985562,5991818,5993861,5994414,5996001,6011616,6012086,6013480,6016088,6016515,6016753,6018364,6021899,6022739,6023630,6025579,6025905,6029341,6031443,6034687,6036387,6044290,6046722,6052542,6056856,6057848,6062953,6064245,6065136,6071296,6072330,6073618,6075334,6095459,6110373,6110865,6121173,6123141,6124420	5949203,5949883,5951883,5952519,5953594,5967602,5968167,5969391,5971709,5976260,5981991,5983254,5985119,5985665,5992018,5994203,5994607,5996222,6011794,6012130,6013645,6016232,6016656,6016870,6019743,6022035,6022898,6023787,6025693,6026046,6029488,6031578,6034826,6036491,6044451,6046817,6052783,6057072,6058044,6063054,6064384,6065273,6071343,6072442,6073741,6075551,6095584,6110582,6110968,6121338,6123196,6124675	0.916667
thyroid_gland_female_adult_53_years	chr3	24018948	24019044	24018976	+	High_confidence	8	8	38	2.771336	4.550953	chr3	24018754	24020004	LTR|ERV1|LTR2752	-	chr3	24018927	24179751	STRG.26504.1	+	24018927,24087924,24173783,24177949	24019269,24088061,24173904,24179751	0.789474
thyroid_gland_female_adult_53_years	chr18	46087030	46087043	46087042	-	High_confidence	3	3	8	0.583439	2.750000	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.750000
thyroid_gland_female_adult_53_years	chr11	58578102	58578145	58578102	-	High_confidence	16	19	122	8.897448	5.455642	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	STRG.92400.3	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58576733	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.991803
thyroid_gland_female_adult_53_years	chr5	180909572	180909573	180909572	+	High_confidence	20	22	26	1.896177	3.844107	chr5	180909597	180909731	SINE|Alu|FLAM_C	+	chr5	180909572	180948353	BTNL8|ENST00000514448.5	+	180909572,180911338,180947511	180909697,180911614,180948353	0.923077
thyroid_gland_female_adult_53_years	chr21	45563026	45563027	45563026	-	High_confidence	6	6	8	0.583439	2.750000	chr21	45562422	45564060	LINE|L1|L1MC3	+	chr21	45513775	45562991	STRG.137547.2	-	45513775,45525816,45530769,45531388,45537770,45562741	45516140,45525958,45530971,45532148,45538008,45562991	0.875000
thyroid_gland_female_adult_53_years	chr12	91179053	91179075	91179053	-	High_confidence	3	4	11	0.802229	3.277613	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.909091
thyroid_gland_female_adult_53_years	chr10	72355126	72355154	72355145	-	High_confidence	9	9	23	1.677388	3.321324	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.869565
thyroid_gland_female_adult_53_years	chr2	3536845	3536867	3536845	-	High_confidence	3	3	13	0.948089	3.085055	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.615385
thyroid_gland_female_adult_53_years	chr8	132867801	132867882	132867881	+	High_confidence	5	6	32	2.333757	3.219537	chr8	132867801	132867981	SINE|MIR|MIRc	+	chr8	132866960	133134897	TG|ENST00000220616.8	+	132866960,132868114,132869728,132871347,132873061,132881862,132882468,132882813,132886447,132887983,132893689,132897648,132898168,132898797,132900236,132901352,132906687,132908185,132911376,132913046,132919375,132923337,132929075,132933560,132935755,132941350,132948775,132961007,132962993,132966559,132967793,132969457,132971793,132972597,132983349,133011900,133013599,133017777,133019601,133021990,133029820,133095043,133096205,133113421,133116608,133131811,133133469,133134675	132867067,132868223,132869826,132871551,132873221,132881969,132882612,132882999,132887548,132888568,132893929,132897786,132898246,132898910,132900339,132901553,132906900,132908340,132911533,132913265,132919525,132923508,132929192,132933676,132935864,132941542,132948943,132961073,132963074,132966697,132967970,132969569,132971873,132972741,132983412,133012035,133013764,133017997,133019695,133022150,133030023,133095208,133096373,133113603,133116716,133131946,133133660,133134897	0.906250
thyroid_gland_female_adult_53_years	chr11	77175226	77175303	77175302	+	High_confidence	7	8	35	2.552547	4.207436	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
thyroid_gland_female_adult_53_years	chr4	48012935	48012945	48012935	-	High_confidence	4	4	12	0.875159	2.663533	chr4	48012591	48013262	LTR|ERV1|MER4-int	-	chr4	47935976	48012944	CNGA1|NM_000087.3	-	47935976,47940762,47942040,47943180,47943370,47949832,47951352,47952582,47981392,48010793,48012888	47937829,47940869,47942148,47943288,47943412,47949895,47951469,47952703,47981500,48010893,48012944	0.750000
thyroid_gland_female_adult_53_years	chr13	49495733	49495741	49495740	+	High_confidence	2	2	7	0.510509	2.584963	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495664	49518060	PHF11|ENST00000481509.5	+	49495664,49513058,49518017	49496095,49513166,49518060	0.571429
thyroid_gland_female_adult_53_years	chr11	65427916	65428578	65428514	+	RAMPAGE_only	50	77	1150	83.869386	7.018208	chr11	65428531	65428593	DNA|hAT-Tip100|MamRep4096	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
thyroid_gland_female_adult_53_years	chr8	143281669	143281687	143281686	-	High_confidence	40	42	130	9.480887	4.961457	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.676923
thyroid_gland_female_adult_53_years	chr20	3795750	3795789	3795750	+	High_confidence	27	28	139	10.137256	5.794599	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.978417
thyroid_gland_female_adult_53_years	chrX	47179147	47179159	47179158	+	High_confidence	5	5	12	0.875159	2.688722	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	1.000000
thyroid_gland_female_adult_53_years	chr4	41118092	41118093	41118092	-	RAMPAGE_only	7	7	8	0.583439	2.521641	chr4	41117925	41118210	SINE|Alu|AluJb	+	chr4	40814606	41214458	APBB2|ENST00000513140.5	-	40814606,40821870,40823643,40825886,40827131,40830462,40890363,40893264,40934455,40934613,40944864,41013582,41033235,41065575,41100638,41142986,41214404	40816259,40822050,40823759,40825967,40827219,40830577,40890491,40893411,40934516,40934699,40945070,41014398,41033304,41065673,41100750,41143142,41214458	0.875000
thyroid_gland_female_adult_53_years	chr7	102822458	102822459	102822458	-	RAMPAGE_only	4	4	7	0.510509	2.521641	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	1.000000
thyroid_gland_female_adult_53_years	chr5	180830869	180830900	180830869	-	RAMPAGE_only	3	3	16	1.166878	3.189898	chr5	180830726	180830835	LTR|ERV1|MER67A	-	chr5	180826869	180827293	STRG.52137.1	-	180826869	180827293	0.750000
thyroid_gland_female_adult_53_years	chr11	57425745	57425779	57425751	-	High_confidence	4	4	15	1.093949	3.521641	chr11	57425746	57425858	LINE|CR1|L3	-	chr11	57415213	57426479	SLC43A3|ENST00000528098.5	-	57415213,57416572,57417747,57420971,57421296,57423981,57425540,57425988	57415397,57416670,57417887,57421064,57421373,57424028,57425670,57426479	0.866667
thyroid_gland_female_adult_53_years	chr16	2757801	2757911	2757801	+	High_confidence	5	5	65	4.740444	4.903459	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.953846
thyroid_gland_female_adult_53_years	chr3	114380842	114380919	114380866	-	RAMPAGE_only	4	5	33	2.406687	3.060820	chr3	114380802	114381001	SINE|MIR|MIR3	+	chr3	114338652	114383641	ZBTB20|ENST00000474710.5	-	114338652,114350273,114380216,114380776,114383615	114339426,114351878,114380404,114380940,114383641	0.969697
thyroid_gland_female_adult_53_years	chr7	11193340	11193367	11193366	+	High_confidence	3	3	6	0.437579	2.584963	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.833333
thyroid_gland_female_adult_53_years	chr3	43490940	43490967	43490966	-	High_confidence	4	5	10	0.729299	2.503258	chr3	43490741	43491230	LTR|ERV1|MER50	+	chr3	43365847	43491772	STRG.27610.8	-	43365847,43432610,43490683	43366974,43432727,43491772	0.900000
thyroid_gland_female_adult_53_years	chr22	37755641	37755658	37755641	+	High_confidence	3	4	9	0.656369	2.503258	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37754881	37774140	STRG.139267.2	+	37754881,37755100,37755549,37757612,37759153,37765669,37768073,37769027,37769261,37771649,37772600	37754984,37755190,37755659,37758138,37759264,37765817,37768176,37769187,37769375,37771736,37774140	1.000000
thyroid_gland_female_adult_53_years	chr1	21876236	21876268	21876236	-	RAMPAGE_only	2	4	8	0.583439	2.750000	chr1	21876092	21876241	LINE|L2|L2c	+	chr1	21822244	21896271	STRG.1046.2	-	21822244,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884677,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896271	1.000000
thyroid_gland_female_adult_53_years	chr19	19958443	19958454	19958453	+	High_confidence	43	43	64	4.667514	4.667254	chr19	19958163	19958689	LTR|ERVL|LTR66	+	chr19	19958005	19964881	STRG.129723.1	+	19958005,19958488,19963118	19958144,19958554,19964881	0.921875
thyroid_gland_female_adult_53_years	chr4	128428005	128428018	128428005	+	High_confidence	4	4	12	0.875159	3.084963	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.750000
thyroid_gland_female_adult_53_years	chr19	44914321	44914322	44914321	+	High_confidence	8	8	11	0.802229	3.459432	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.909091
thyroid_gland_female_adult_53_years	chr15	75347037	75347053	75347042	+	High_confidence	9	9	22	1.604458	3.663533	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.727273
thyroid_gland_female_adult_53_years	chr12	107864773	107864816	107864796	-	High_confidence	3	3	11	0.802229	2.732159	chr12	107864193	107865394	LTR|ERV1|LTR12D	+	chr12	107839349	107864562	AC126177.4|ENST00000551629.2	-	107839349,107845400,107845962,107864441	107839366,107845587,107846117,107864562	0.818182
thyroid_gland_female_adult_53_years	chr9	104763726	104763744	104763743	+	High_confidence	2	2	6	0.437579	2.584963	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	1.000000
thyroid_gland_female_adult_53_years	chr6	35543633	35543649	35543648	+	High_confidence	62	101	210	15.315279	5.982369	chr6	35543503	35543668	DNA|hAT-Charlie|MER5B	+	chr6	35543633	35597893	STRG.54567.3	+	35543633,35544867,35593029	35543758,35544933,35597893	0.676190
thyroid_gland_female_adult_53_years	chr9	13386129	13386133	13386132	+	RAMPAGE_only	5	5	9	0.656369	2.725481	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	1.000000
thyroid_gland_female_adult_53_years	chr10	103181309	103181329	103181309	-	RAMPAGE_only	5	5	12	0.875159	3.022055	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.583333
thyroid_gland_female_adult_53_years	chr9	127642428	127642455	127642451	+	High_confidence	14	14	52	3.792355	4.907336	chr9	127642433	127642559	LINE|CR1|L3	+	chr9	127642342	127663258	STXBP1|ENST00000626333.1	+	127642342,127651602,127653714,127658374,127660029,127661101,127663204	127642563,127651652,127653796,127658451,127660108,127661205,127663258	0.730769
thyroid_gland_female_adult_53_years	chr19	51350355	51350357	51350355	-	RAMPAGE_only	6	7	10	0.729299	2.725481	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.900000
thyroid_gland_female_adult_53_years	chr3	164451380	164451401	164451400	+	High_confidence	8	10	16	1.166878	3.327820	chr3	164449656	164452200	LINE|L1|L1PA15	-	chr3	164451189	164628483	STRG.33577.2	+	164451189,164608991,164615798,164619324	164451535,164609068,164616502,164628483	0.625000
thyroid_gland_female_adult_53_years	chr11	65382641	65382646	65382641	-	High_confidence	14	14	33	2.406687	4.437500	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382642	STRG.92855.5	-	65375193,65376817,65379375,65379866,65380131,65380533	65376675,65377076,65379561,65379938,65380175,65382642	0.939394
thyroid_gland_female_adult_53_years	chr11	93499283	93499313	93499303	-	High_confidence	3	3	13	0.948089	3.084963	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	0.923077
thyroid_gland_female_adult_53_years	chr7	101308295	101308301	101308295	+	High_confidence	7	9	17	1.239808	3.625000	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.882353
thyroid_gland_female_adult_53_years	chr8	119875396	119875440	119875413	+	RAMPAGE_only	4	4	12	0.875159	3.084963	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.666667
thyroid_gland_female_adult_53_years	chr7	107580245	107580267	107580264	+	High_confidence	869	872	3936	287.052091	6.510388	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.955793
thyroid_gland_female_adult_53_years	chr3	125323728	125323729	125323728	-	RAMPAGE_only	4	4	7	0.510509	2.521641	chr3	125323678	125323983	SINE|Alu|AluY	+	chr3	125313414	125357280	ZNF148|ENST00000495019.5	-	125313414,125323308,125331157,125356976	125313656,125323444,125331238,125357280	0.571429
thyroid_gland_female_adult_53_years	chr6	84139533	84139566	84139533	+	RAMPAGE_only	15	15	51	3.719425	4.653324	chr6	84139529	84140525	LTR|ERV1|MER34-int	+	chr6	84145490	84146232	STRG.57258.1	+	84145490	84146232	0.607843
thyroid_gland_female_adult_53_years	chr19	48868595	48868631	48868595	-	High_confidence	457	469	1867	136.160125	7.619037	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.992501
thyroid_gland_female_adult_53_years	chr6	141404139	141404142	141404141	+	High_confidence	6	9	11	0.802229	2.845351	chr6	141403283	141405210	LTR|ERV1|LOR1-int	+	chr6	141403987	141446588	STRG.60121.1	+	141403987,141446008	141404274,141446588	0.545455
thyroid_gland_female_adult_53_years	chr14	81427409	81427444	81427409	-	High_confidence	4	4	23	1.677388	3.638148	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	1.000000
thyroid_gland_female_adult_53_years	chr11	65434491	65434748	65434552	+	RAMPAGE_only	14	16	213	15.534069	5.902113	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.995305
thyroid_gland_female_adult_53_years	chr2	159428356	159428357	159428356	-	RAMPAGE_only	5	5	8	0.583439	2.521641	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.750000
thyroid_gland_female_adult_53_years	chr2	216864755	216864764	216864755	-	High_confidence	2	2	7	0.510509	2.807355	chr2	216864671	216864773	SINE|MIR|MIRc	-	chr2	216859457	216864749	STRG.23470.1	-	216859457,216859895,216860924,216864391	216859695,216860360,216860982,216864749	0.714286
thyroid_gland_female_adult_53_years	chr10	89556703	89556704	89556703	-	High_confidence	72	91	102	7.438850	5.236814	chr10	89556405	89557345	LTR|ERVL|MER21A	+	chr10	89462502	89556641	SLC16A12|ENST00000475682.1	-	89462502,89555881,89556523	89462624,89555981,89556641	0.519608
thyroid_gland_female_adult_53_years	chr16	70590328	70590331	70590328	+	RAMPAGE_only	4	6	11	0.802229	2.721928	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.909091
thyroid_gland_female_adult_53_years	chr16	11587465	11587469	11587465	-	High_confidence	10	10	19	1.385668	3.070847	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
thyroid_gland_female_adult_53_years	chr2	9473635	9473653	9473639	+	High_confidence	5	5	15	1.093949	2.739572	chr2	9473556	9473708	DNA|hAT-Charlie|MER5B	-	chr2	9473657	9484548	IAH1|ENST00000496603.5	+	9473657,9478221,9481285,9484431	9473899,9478370,9481447,9484548	1.000000
thyroid_gland_female_adult_53_years	chr4	119217569	119217608	119217569	+	RAMPAGE_only	3	3	11	0.802229	2.845351	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212742	119294638	STRG.41281.2	+	119212742,119217549,119235289,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119212873,119217673,119235411,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119294638	1.000000
thyroid_gland_female_adult_53_years	chr22	39021127	39021156	39021155	+	High_confidence	6	6	16	1.166878	3.875000	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
thyroid_gland_female_adult_53_years	chr2	113237350	113237371	113237350	-	High_confidence	3	3	7	0.510509	2.584963	chr2	113237242	113237460	SINE|MIR|MIRc	-	chr2	113225596	113237508	PAX8|ENST00000485840.1	-	113225596,113235393,113236600	113227256,113235582,113237508	0.857143
thyroid_gland_female_adult_53_years	chr1	97904654	97904676	97904675	-	RAMPAGE_only	5	5	12	0.875159	2.855389	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	1.000000
thyroid_gland_female_adult_53_years	chrX	48683361	48683363	48683361	+	High_confidence	6	10	10	0.729299	2.947703	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683757	48685621	STRG.142064.1	+	48683757,48684282,48685546	48683985,48684423,48685621	0.500000
thyroid_gland_female_adult_53_years	chrX	5726107	5726129	5726116	-	High_confidence	16	18	57	4.157004	4.527968	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719123	5726359	STRG.140277.1	-	5719123,5725929	5719872,5726359	0.912281
thyroid_gland_female_adult_53_years	chr7	44619050	44619051	44619050	+	RAMPAGE_only	28	28	31	2.260827	3.974695	chr7	44618793	44619481	LTR|ERVL|MER21A	+	chr7	44606638	44709066	OGDH|ENST00000222673.5	+	44606638,44624316,44645326,44647656,44666735,44673786,44674410,44675177,44675969,44681719,44693824,44694423,44696024,44696428,44696913,44697369,44697603,44698191,44700140,44701542,44707224,44707581,44707878	44606653,44624565,44645518,44647759,44666851,44673941,44674557,44675268,44676149,44681848,44694004,44694576,44696127,44696557,44697064,44697497,44697782,44698263,44700269,44701615,44707388,44707736,44709066	0.935484
thyroid_gland_female_adult_53_years	chr2	55618850	55618904	55618850	-	High_confidence	4	7	18	1.312738	3.852169	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.944444
thyroid_gland_female_adult_53_years	chr12	97476464	97476548	97476495	+	RAMPAGE_only	4	4	28	2.042037	4.280395	chr12	97476471	97476569	SINE?|SINE?|UCON83	+	chr12	97462772	97482644	STRG.102324.3	+	97462772,97463151,97463411	97462872,97463336,97482644	0.892857
thyroid_gland_female_adult_53_years	chr7	101217578	101217599	101217578	-	High_confidence	8	8	21	1.531528	3.826875	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.904762
thyroid_gland_female_adult_53_years	chr10	98391166	98391200	98391199	-	RAMPAGE_only	3	3	12	0.875159	2.913977	chr10	98391143	98391387	LINE|L2|L2c	+	chr10	98383564	98394084	STRG.88037.5	-	98383564,98384946,98387200,98390597,98392431,98392941	98383868,98385067,98388508,98391082,98392566,98394084	0.916667
thyroid_gland_female_adult_53_years	chrX	19350008	19350082	19350008	+	RAMPAGE_only	2	2	15	1.093949	3.521641	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19343967	19353327	PDHA1|ENST00000379805.3	+	19343967,19349311,19349936,19351280,19353081	19344094,19349371,19350110,19351407,19353327	0.600000
thyroid_gland_female_adult_53_years	chr3	187021891	187021901	187021900	+	High_confidence	6	6	17	1.239808	3.499228	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021876	187078553	ST6GAL1|NM_003032.2	+	187021876,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	1.000000
thyroid_gland_female_adult_53_years	chr18	80148048	80148049	80148048	+	High_confidence	12	12	12	0.875159	3.084963	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148010	80178432	PARD6G-AS1|ENST00000589574.1	+	80148010,80175879,80178085	80148254,80175935,80178432	0.666667
thyroid_gland_female_adult_53_years	chr19	48270080	48270081	48270080	+	High_confidence	8	8	8	0.583439	2.500000	chr19	48269716	48270187	LTR|ERV1|LTR7C	+	chr19	48270098	48287608	ZNF114|NM_153608.2	+	48270098,48271244,48271726,48279730,48282370,48285760	48270219,48271449,48271828,48279808,48282497,48287608	0.875000
thyroid_gland_female_adult_53_years	chr9	129698737	129698760	129698737	+	High_confidence	23	25	60	4.375794	4.798069	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129698752	129722671	STRG.83486.2	+	129698752,129719230,129720595,129722216	129698809,129719418,129720774,129722671	0.983333
thyroid_gland_female_adult_53_years	chr8	30812434	30812454	30812453	-	High_confidence	15	15	45	3.281846	4.802915	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30793961	30812818	STRG.72548.3	-	30793961,30794191,30797580,30799545,30812319,30812514	30794078,30794281,30797754,30799755,30812467,30812818	0.800000
thyroid_gland_female_adult_53_years	chr2	227164620	227164621	227164620	+	High_confidence	111	113	143	10.428976	6.283646	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.636364
thyroid_gland_female_adult_53_years	chr16	8842153	8842192	8842153	+	High_confidence	4	4	13	0.948089	3.418296	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.923077
thyroid_gland_female_adult_53_years	chr2	119730622	119730655	119730622	-	High_confidence	3	3	18	1.312738	3.503258	chr2	119730532	119730650	DNA|hAT-Charlie|MER5A1	-	chr2	119727463	119730723	STRG.18614.1	-	119727463,119728350,119730285	119728289,119728856,119730723	0.555556
thyroid_gland_female_adult_53_years	chr11	123060124	123060219	123060174	-	High_confidence	19	19	239	17.430246	4.953713	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.577406
thyroid_gland_female_adult_53_years	chr20	45833293	45833311	45833293	-	High_confidence	3	3	14	1.021019	3.026987	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.928571
thyroid_gland_female_adult_53_years	chr11	65434054	65434369	65434070	+	RAMPAGE_only	9	11	180	13.127382	6.007694	chr11	65433870	65434194	LINE|L1|L1ME3F	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
thyroid_gland_female_adult_53_years	chr11	78081870	78081884	78081872	-	RAMPAGE_only	5	8	20	1.458598	3.721928	chr11	78081299	78085065	LTR|ERV1|HERVH-int	+	chr11	78015714	78080219	NDUFC2-KCTD14|NM_001203261.1	-	78015714,78072997,78079578	78017270,78073141,78080219	0.950000
thyroid_gland_female_adult_53_years	chr5	151157944	151158006	151157944	-	High_confidence	3	3	10	0.729299	2.521928	chr5	151157893	151158048	SINE|MIR|MIR3	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	1.000000
thyroid_gland_female_adult_53_years	chr15	24919672	24919693	24919692	+	RAMPAGE_only	11	11	35	2.552547	4.436007	chr15	24919446	24919852	LTR|ERV1|MER31A	-	chr15	24954892	24978723	SNURF|NM_005678.4	+	24954892,24962113,24967931,24974310,24975357,24976304,24976876,24977777,24978192,24978406	24955062,24962209,24968082,24974456,24975509,24976416,24977029,24977916,24978318,24978723	0.600000
thyroid_gland_female_adult_53_years	chr19	20423697	20423704	20423703	-	High_confidence	18	27	52	3.792355	3.264440	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20402682	20424601	STRG.129662.7	-	20402682,20408949,20423480	20406132,20409028,20424601	0.884615
thyroid_gland_female_adult_53_years	chr22	18149848	18149869	18149865	+	High_confidence	5	7	19	1.385668	3.321104	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.894737
thyroid_gland_female_adult_53_years	chr1	196742010	196742046	196742045	+	RAMPAGE_only	2	2	7	0.510509	2.584963	chr1	196742092	196742390	SINE|Alu|AluSz	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.857143
thyroid_gland_female_adult_53_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	16	16	16	1.166878	2.899397	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	1.000000
thyroid_gland_female_adult_53_years	chr12	119179290	119179297	119179290	+	High_confidence	4	4	10	0.729299	2.921928	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	1.000000
thyroid_gland_female_adult_53_years	chr21	8817798	8817799	8817798	+	RAMPAGE_only	22	26	27	1.969107	4.546594	chr21	8817416	8819072	LINE|L1|L1PB	-	chr21	8824945	8878846	STRG.136139.1	+	8824945,8857287,8859996,8863997,8866870,8866990,8873016,8877130,8878663	8825130,8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878846	0.962963
thyroid_gland_female_adult_53_years	chr2	48568957	48568989	48568986	+	High_confidence	15	27	58	4.229934	4.725532	chr2	48569019	48569241	SINE|MIR|MIRb	+	chr2	48569019	48679609	STON1-GTF2A1L|NM_172311.2	+	48569019,48580586,48591652,48620850,48621166,48642401,48645032,48646452,48669721,48671590,48679334	48569086,48582563,48591855,48620952,48621290,48642457,48645117,48647042,48669982,48671680,48679609	0.982759
thyroid_gland_female_adult_53_years	chr2	11201309	11201327	11201318	-	RAMPAGE_only	3	4	11	0.802229	3.321928	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.909091
thyroid_gland_female_adult_53_years	chr7	80369531	80369569	80369531	+	High_confidence	120	120	370	26.984063	6.532884	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.854054
thyroid_gland_female_adult_53_years	chr18	7946878	7946898	7946878	+	High_confidence	23	23	45	3.281846	4.453417	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.844444
thyroid_gland_female_adult_53_years	chr12	643627	643636	643635	-	High_confidence	18	18	41	2.990126	3.889823	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.975610
thyroid_gland_female_adult_53_years	chr8	53523862	53523902	53523862	-	High_confidence	5	5	18	1.312738	3.266333	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
thyroid_gland_female_adult_53_years	chr12	123390709	123390757	123390725	+	High_confidence	3	5	15	1.093949	3.373557	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.933333
thyroid_gland_female_adult_53_years	chr8	143558019	143558020	143558019	+	High_confidence	15	15	15	1.093949	3.773557	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.933333
thyroid_gland_female_adult_53_years	chr19	20362546	20362629	20362546	+	High_confidence	101	114	473	34.495843	6.327737	chr19	20362580	20362814	LTR|ERV1|HERVS71-int	+	chr19	20362555	20371950	STRG.129725.1	+	20362555,20369177	20362794,20371950	0.980973
thyroid_gland_female_adult_53_years	chr8	116648847	116648905	116648864	-	RAMPAGE_only	4	4	20	1.458598	3.826875	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.950000
thyroid_gland_female_adult_53_years	chr8	109581129	109581199	109581129	-	High_confidence	3	3	18	1.312738	3.308271	chr8	109580602	109581257	LINE|L2|L2c	+	chr8	109575974	109581058	SYBU|ENST00000527707.5	-	109575974,109577867,109579798,109580878	109576013,109578017,109580002,109581058	1.000000
thyroid_gland_female_adult_53_years	chr17	4143196	4143215	4143199	+	High_confidence	98	99	213	15.534069	5.712321	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	1.000000
thyroid_gland_female_adult_53_years	chr3	33838239	33838264	33838239	+	RAMPAGE_only	4	4	14	1.021019	3.378783	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.857143
thyroid_gland_female_adult_53_years	chr2	113222624	113222640	113222624	-	RAMPAGE_only	5	5	11	0.802229	3.121928	chr2	113222501	113223504	LINE|L2|L2a	+	chr2	113218527	113235443	STRG.18633.11	-	113218527,113220091,113225903,113235393	113218609,113225770,113227256,113235443	0.727273
thyroid_gland_female_adult_53_years	chr2	96638013	96638023	96638022	-	High_confidence	4	4	10	0.729299	2.725481	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.700000
thyroid_gland_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	447	531	855	62.355065	4.842258	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.982456
thyroid_gland_female_adult_53_years	chr3	164451245	164451328	164451327	+	High_confidence	25	25	118	8.605728	5.981764	chr3	164449656	164452200	LINE|L1|L1PA15	-	chr3	164451189	164691459	STRG.33577.1	+	164451189,164608991,164615798,164619324,164687627	164451535,164609068,164616502,164619440,164691459	0.754237
thyroid_gland_female_adult_53_years	chr10	65570512	65570522	65570519	+	High_confidence	5	5	15	1.093949	3.456565	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.666667
thyroid_gland_female_adult_53_years	chr14	57112666	57112667	57112666	-	High_confidence	4	4	7	0.510509	2.521641	chr14	57112210	57118214	LINE|L1|L1PA2	+	chr14	57067007	57112660	AL391152.1|ENST00000551408.2	-	57067007,57112194	57067165,57112660	0.571429
thyroid_gland_female_adult_53_years	chr17	70100660	70100739	70100660	+	RAMPAGE_only	6	6	31	2.260827	4.192595	chr17	70100541	70100738	SINE|MIR|MIR	-	chr17	70096639	70133604	KCNJ16|ENST00000586462.1	+	70096639,70131994	70096926,70133604	0.967742
thyroid_gland_female_adult_53_years	chr15	55514013	55514014	55514013	-	High_confidence	20	20	27	1.969107	4.243856	chr15	55513405	55516274	LTR|ERV1|HERVE_a-int	-	chr15	55510367	55514719	STRG.114525.27	-	55510367	55514719	0.666667
thyroid_gland_female_adult_53_years	chr3	43490757	43490820	43490776	-	High_confidence	30	30	200	14.585980	6.194814	chr3	43490741	43491230	LTR|ERV1|MER50	+	chr3	43365847	43491772	STRG.27610.8	-	43365847,43432610,43490683	43366974,43432727,43491772	0.880000
thyroid_gland_female_adult_53_years	chr5	73078286	73078288	73078287	+	RAMPAGE_only	4	7	8	0.583439	2.807355	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.875000
thyroid_gland_female_adult_53_years	chr8	143018394	143018434	143018394	-	High_confidence	9	10	69	5.032163	4.958031	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.811594
thyroid_gland_female_adult_53_years	chr8	132911403	132911526	132911474	+	RAMPAGE_only	138	146	1371	99.986894	7.983488	chr8	132911503	132911684	SINE|MIR|MIRc	+	chr8	132897688	133134897	TG|ENST00000523756.5	+	132897688,132898168,132898797,132906687,132908185,132911376,132913046,132919375,132923337,132929075,132933560,132935755,132941350,132948775,132961007,132962993,132966559,132967793,132969457,132971793,132972597,132983349,133011900,133013599,133017777,133019601,133021990,133029820,133095043,133096205,133113421,133116608,133131811,133133469,133134675	132897786,132898246,132898910,132906900,132908340,132911533,132913265,132919525,132923508,132929192,132933676,132935864,132941542,132948943,132961073,132963074,132966697,132967970,132969569,132971873,132972741,132983412,133012035,133013764,133017997,133019695,133022150,133030023,133095208,133096373,133113603,133116716,133131946,133133660,133134897	0.846827
thyroid_gland_female_adult_53_years	chr19	43528044	43528045	43528044	-	High_confidence	18	18	23	1.677388	3.663533	chr19	43527982	43528071	SINE|Alu|AluSz6	+	chr19	43506718	43527256	ETHE1|NM_014297.4	-	43506718,43507943,43508774,43511436,43526200,43526514,43527096	43506902,43508060,43508864,43511566,43526349,43526659,43527256	0.826087
thyroid_gland_female_adult_53_years	chr8	18063185	18063216	18063185	-	High_confidence	12	13	51	3.719425	4.363506	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.980392
thyroid_gland_female_adult_53_years	chr6	28354137	28354206	28354205	-	High_confidence	50	52	126	9.189168	5.283400	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.865079
thyroid_gland_female_adult_53_years	chr8	132966295	132966314	132966295	+	RAMPAGE_only	2	2	8	0.583439	2.750000	chr8	132966028	132966310	LINE|CR1|L3	+	chr8	132964606	133134903	TG|ENST00000519543.5	+	132964606,132966559,132967793,132969457,132971793,132972597,133011900,133013599,133017777,133019601,133021990,133029820,133095043,133096205,133113421,133116608,133131811,133133469,133134675	132964933,132966697,132967970,132969569,132971873,132972741,133012035,133013764,133017997,133019695,133022150,133030023,133095208,133096373,133113603,133116716,133131946,133133660,133134903	1.000000
thyroid_gland_female_adult_53_years	chr2	41708134	41708156	41708134	-	High_confidence	6	7	13	0.948089	3.180833	chr2	41707760	41708133	LTR|ERVL-MaLR|MLT1B	-	chr2	40970227	41708179	STRG.14483.1	-	40970227,41166462,41418927,41707834	40970263,41166555,41419041,41708179	0.615385
thyroid_gland_female_adult_53_years	chr2	200889135	200889157	200889153	-	High_confidence	10	10	27	1.969107	4.151799	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889154	PPIL3|ENST00000392283.8	-	200870955,200876918,200881420,200882341,200885697,200887612,200888955	200871521,200877037,200881488,200882435,200885772,200887685,200889154	0.814815
thyroid_gland_female_adult_53_years	chr16	15006444	15006450	15006449	+	RAMPAGE_only	4	4	9	0.656369	2.750000	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	14997747	15038323	PDXDC1|ENST00000450288.3	+	14997747,14998339,15006393,15008778,15009680,15016128,15017119,15017320,15018839,15022703,15026642,15028877,15029950,15031734,15032860,15033277,15034285,15034456,15035448,15036015	14997826,14998405,15006583,15008847,15009759,15016213,15017168,15017422,15018965,15022754,15026706,15028966,15030056,15031906,15032979,15033399,15034378,15034553,15035553,15038323	0.666667
thyroid_gland_female_adult_53_years	chr1	154975497	154975519	154975518	+	High_confidence	6	6	12	0.875159	2.625815	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.833333
thyroid_gland_female_adult_53_years	chr12	50924078	50924079	50924078	+	High_confidence	24	31	31	2.260827	4.056565	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	0.967742
thyroid_gland_female_adult_53_years	chr8	39083028	39083066	39083065	+	RAMPAGE_only	5	6	19	1.385668	3.681881	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.789474
thyroid_gland_female_adult_53_years	chr2	47369479	47369492	47369479	+	High_confidence	63	65	248	18.086615	6.450519	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369474	47375254	EPCAM|ENST00000474691.1	+	47369474,47373462,47375233	47369581,47374048,47375254	0.733871
thyroid_gland_female_adult_53_years	chr9	20658426	20658453	20658426	+	High_confidence	5	5	15	1.093949	3.240224	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658329	20995948	STRG.77284.4	+	20658329,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	0.866667
thyroid_gland_female_adult_53_years	chr4	75047174	75047506	75047499	+	RAMPAGE_only	16	16	307	22.389480	5.735966	chr4	75047494	75047704	DNA|hAT-Charlie|MER20	+	chr4	74933115	75050113	PARM1|ENST00000307428.7	+	74933115,75012424,75033882,75046162	74933370,75013150,75033961,75050113	0.993485
thyroid_gland_female_adult_53_years	chr1	39310294	39310361	39310294	+	RAMPAGE_only	4	6	21	1.531528	3.784942	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	1.000000
thyroid_gland_female_adult_53_years	chr4	86453184	86453203	86453190	-	High_confidence	9	12	48	3.500635	3.817907	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453192	MAPK10|ENST00000361569.8	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86453029	86017375,86029287,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453192	0.833333
thyroid_gland_female_adult_53_years	chr3	135965670	135965742	135965723	+	High_confidence	8	10	64	4.667514	4.974196	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	1.000000
thyroid_gland_female_adult_53_years	chr10	88545483	88545513	88545483	-	RAMPAGE_only	4	4	15	1.093949	3.373557	chr10	88545305	88545664	LTR|ERVL-MaLR|THE1B	-	chr10	88284958	88583213	RNLS|ENST00000331772.8	-	88284958,88314465,88362551,88572902,88581566,88582201,88583072	88285506,88314641,88362725,88573061,88581709,88582307,88583213	1.000000
thyroid_gland_female_adult_53_years	chr6	31587243	31587275	31587243	+	High_confidence	3	3	8	0.583439	2.750000	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	0.875000
thyroid_gland_female_adult_53_years	chr22	49657443	49657466	49657443	-	High_confidence	5	5	15	1.093949	3.521641	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49414523	49657504	C22orf34|ENST00000414287.5	-	49414523,49416601,49416814,49440875,49657404	49416035,49416735,49416928,49441212,49657504	0.533333
thyroid_gland_female_adult_53_years	chr2	88784890	88784894	88784890	+	RAMPAGE_only	7	8	15	1.093949	2.950212	chr2	88784858	88784980	DNA|hAT-Charlie|MER5A1	-	chr2	88782730	88806546	STRG.17247.1	+	88782730,88782852,88784597,88784720,88786469,88786590,88788317,88788441,88792420,88801098,88804379,88804786,88805378	88782762,88782925,88784626,88784926,88786498,88786663,88788346,88788514,88792494,88801305,88804450,88804880,88806546	0.933333
thyroid_gland_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	30	31	36	2.625476	4.461320	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.972222
thyroid_gland_female_adult_53_years	chr9	92536601	92536602	92536601	-	High_confidence	14	18	18	1.312738	2.984234	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.888889
thyroid_gland_female_adult_53_years	chr18	73691288	73691305	73691288	-	High_confidence	30	34	59	4.302864	5.083300	chr18	73691250	73691410	LTR|ERV1|MER41C	+	chr18	73378358	73691278	STRG.127868.1	-	73378358,73400411,73408614,73647570,73653601,73655244,73691228	73378446,73400508,73408722,73648396,73653732,73655403,73691278	0.627119
thyroid_gland_female_adult_53_years	chr2	113240968	113240973	113240972	+	RAMPAGE_only	14	14	22	1.604458	3.541446	chr2	113240741	113241195	LINE|L2|L2b	-	chr2	113235526	113241410	PAX8-AS1|ENST00000437551.5	+	113235526,113238089,113239088,113241200	113235570,113238212,113241101,113241410	0.590909
thyroid_gland_female_adult_53_years	chr19	9140393	9140428	9140393	+	High_confidence	42	42	164	11.960504	5.891198	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.841463
thyroid_gland_female_adult_53_years	chr20	50057200	50057222	50057204	-	High_confidence	8	8	24	1.750318	4.334963	chr20	50057071	50057285	SINE|MIR|MIRb	+	chr20	50056624	50057202	STRG.135198.1	-	50056624	50057202	0.583333
thyroid_gland_female_adult_53_years	chr2	231072232	231072255	231072254	+	RAMPAGE_only	3	4	10	0.729299	2.521928	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.800000
thyroid_gland_female_adult_53_years	chr3	48430182	48430190	48430182	-	High_confidence	5	6	19	1.385668	3.576618	chr3	48430133	48430258	SINE|MIR|MIRb	+	chr3	48403853	48430051	PLXNB1|ENST00000296440.10	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48430007	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48430051	1.000000
thyroid_gland_female_adult_53_years	chr3	50816069	50816070	50816069	+	RAMPAGE_only	7	7	8	0.583439	2.521641	chr3	50815749	50816183	LTR|ERV1|LTR54B	-	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.875000
thyroid_gland_female_adult_53_years	chr10	85170164	85170169	85170168	-	High_confidence	8	9	14	1.021019	3.026987	chr10	85169831	85170417	LTR|ERV1|LTR78	+	chr10	85169719	85169968	STRG.87047.1	-	85169719	85169968	0.642857
thyroid_gland_female_adult_53_years	chr1	89272836	89272874	89272859	-	High_confidence	15	17	101	7.365920	5.168724	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.960396
thyroid_gland_female_adult_53_years	chr5	171400153	171400190	171400153	+	RAMPAGE_only	4	4	18	1.312738	3.807764	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171387850	171407125	NPM1|ENST00000393820.2	+	171387850,171390050,171391304,171391705,171392709,171392913,171400152,171400838,171405301,171406396	171388006,171390130,171391424,171391799,171392816,171392978,171400210,171400925,171405403,171407125	0.500000
thyroid_gland_female_adult_53_years	chr4	75127183	75127264	75127263	-	RAMPAGE_only	9	20	44	3.208916	4.536041	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.954545
thyroid_gland_female_adult_53_years	chr2	210225579	210225609	210225579	-	High_confidence	5	5	18	1.312738	3.381580	chr2	210225525	210225678	DNA|hAT-Charlie|Charlie24	-	chr2	210187938	210225491	ACADL|ENST00000233710.3	-	210187938,210192803,210195210,210203330,210204580,210205631,210210195,210216346,210217964,210220646,210225186	210189054,210192890,210195338,210203444,210204682,210205796,210210262,210216511,210218102,210220802,210225491	0.888889
thyroid_gland_female_adult_53_years	chr21	29077486	29077487	29077486	+	High_confidence	23	23	30	2.187897	3.950212	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.800000
thyroid_gland_female_adult_53_years	chr2	185425075	185425086	185425085	+	High_confidence	4	4	10	0.729299	2.846439	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185425340	185425588	STRG.21260.1	+	185425340	185425588	0.700000
thyroid_gland_female_adult_53_years	chr4	137700860	137700881	137700880	-	RAMPAGE_only	4	4	8	0.583439	2.500000	chr4	137700532	137701143	LTR|ERV1|LTR27D	+	chr4	137645264	137655174	AC116563.1|ENST00000505454.1	-	137645264,137648364,137652162,137655127	137645493,137648459,137652187,137655174	0.500000
thyroid_gland_female_adult_53_years	chr6	28354022	28354055	28354039	-	High_confidence	4	4	21	1.531528	4.201841	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329610	28354065	ZSCAN31|ENST00000444081.5	-	28329610,28336789,28337798,28353861	28329714,28336943,28337893,28354065	0.523810
thyroid_gland_female_adult_53_years	chr3	128626815	128626821	128626820	-	RAMPAGE_only	5	5	10	0.729299	2.641604	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.600000
thyroid_gland_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	73	74	74	5.396813	5.003123	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.837838
thyroid_gland_female_adult_53_years	chr15	55513689	55513699	55513698	-	RAMPAGE_only	8	8	14	1.021019	3.546594	chr15	55513405	55516274	LTR|ERV1|HERVE_a-int	-	chr15	55417754	55508234	DYX1C1|NM_001033560.1	-	55417754,55434904,55439471,55450221,55466929,55491122,55497711,55498206,55508121	55418133,55435058,55439581,55450367,55467161,55491256,55497859,55498584,55508234	0.500000
thyroid_gland_female_adult_53_years	chr17	6853872	6853934	6853928	+	High_confidence	10	10	42	3.063056	4.804508	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6895102	ALOX12P2|ENST00000576636.6	+	6853929,6854213,6892002,6894883,6895095	6854060,6854453,6892075,6895006,6895102	0.642857
thyroid_gland_female_adult_53_years	chr13	98988460	98988461	98988460	-	RAMPAGE_only	584	610	635	46.310487	5.103247	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98793486	98978084	DOCK9|NM_001130048.1	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,98977783	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,98978084	0.877165
thyroid_gland_female_adult_53_years	chr7	6953942	6953962	6953961	-	High_confidence	8	8	31	2.260827	4.321627	chr7	6950904	6958745	LTR|ERV1|HERVE-int	-	chr7	6952178	6953932	STRG.62332.1	-	6952178,6953825	6953249,6953932	0.870968
thyroid_gland_female_adult_53_years	chr7	134527596	134527597	134527596	+	High_confidence	7	7	7	0.510509	2.807355	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.857143
thyroid_gland_female_adult_53_years	chr2	26298400	26298434	26298418	+	RAMPAGE_only	3	5	13	0.948089	2.918296	chr2	26298403	26299683	LTR|ERV1|HERV15-int	+	chr2	26303784	26304243	STRG.13961.1	+	26303784	26304243	0.846154
thyroid_gland_female_adult_53_years	chr8	56559496	56559497	56559496	-	High_confidence	10	10	11	0.802229	2.921928	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520158	56559497	LINC00968|ENST00000521483.1	-	56520158,56544078,56559452	56520567,56544178,56559497	0.727273
thyroid_gland_female_adult_53_years	chr14	101731413	101731414	101731413	+	High_confidence	9	9	14	1.021019	3.521641	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	1.000000
thyroid_gland_female_adult_53_years	chr5	117454948	117454978	117454949	+	High_confidence	12	23	51	3.719425	4.347683	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.803922
thyroid_gland_female_adult_53_years	chr10	34973954	34973991	34973977	+	High_confidence	9	9	24	1.750318	3.936180	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34973983	34975576	STRG.85419.2	+	34973983,34974657	34974282,34975576	0.791667
thyroid_gland_female_adult_53_years	chr15	57451514	57451598	57451514	+	RAMPAGE_only	3	3	23	1.677388	3.754442	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57406695	57544600	STRG.114640.3	+	57406695,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472	57407102,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544600	0.956522
thyroid_gland_female_adult_53_years	chr19	3062922	3062983	3062922	-	High_confidence	21	23	129	9.407957	5.470337	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.984496
thyroid_gland_female_adult_53_years	chr9	121313981	121314021	121314020	+	RAMPAGE_only	86	88	269	19.618143	5.275817	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.996283
thyroid_gland_female_adult_53_years	chr12	56784482	56784522	56784482	-	RAMPAGE_only	3	3	17	1.239808	3.690117	chr12	56782660	56784730	Retroposon|SVA|SVA_D	-	chr12	56758830	56790332	STRG.100482.1	-	56758830,56783911,56790305	56759205,56784429,56790332	1.000000
thyroid_gland_female_adult_53_years	chr15	57516631	57516661	57516631	+	RAMPAGE_only	2	2	9	0.656369	2.503258	chr15	57516656	57516717	SINE|MIR|MIR	+	chr15	57406695	57544600	STRG.114640.3	+	57406695,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472	57407102,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544600	1.000000
thyroid_gland_female_adult_53_years	chr13	30376953	30376965	30376953	-	High_confidence	5	6	9	0.656369	2.725481	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30374002	30376964	LINC00426|ENST00000416261.1	-	30374002,30375466,30376826	30374093,30375776,30376964	0.777778
thyroid_gland_female_adult_53_years	chr19	20750334	20750366	20750354	-	High_confidence	16	16	107	7.803499	5.901064	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746861	20750360	STRG.129716.1	-	20746861,20750237	20750132,20750360	0.971963
thyroid_gland_female_adult_53_years	chr15	40375820	40375821	40375820	-	High_confidence	9	9	10	0.729299	2.947703	chr15	40375715	40376016	DNA|hAT-Charlie|Charlie2a	+	chr15	40358477	40375926	STRG.113783.9	-	40358477,40370882,40371838,40375622	40369527,40371017,40372094,40375926	0.800000
thyroid_gland_female_adult_53_years	chr3	164450716	164450717	164450716	+	High_confidence	5	5	8	0.583439	2.807355	chr3	164449656	164452200	LINE|L1|L1PA15	-	chr3	164451189	164628483	STRG.33577.2	+	164451189,164608991,164615798,164619324	164451535,164609068,164616502,164628483	0.625000
thyroid_gland_female_adult_53_years	chr7	6590246	6590258	6590257	+	High_confidence	5	6	13	0.948089	2.688722	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.846154
thyroid_gland_female_adult_53_years	chr2	227164544	227164545	227164544	+	High_confidence	4	4	6	0.437579	2.584963	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.833333
thyroid_gland_female_adult_53_years	chr14	104048991	104049001	104049000	+	High_confidence	3	3	7	0.510509	2.521641	chr14	104048402	104049097	LINE|L1|L1M4a1	-	chr14	104049417	104052665	TDRD9|ENST00000462273.1	+	104049417,104051980	104049680,104052665	1.000000
thyroid_gland_female_adult_53_years	chr11	18706988	18707033	18707010	-	High_confidence	9	14	62	4.521654	5.008986	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18705417	18706129	IGSF22|ENST00000510673.1	-	18705417,18705816	18705617,18706129	0.516129
thyroid_gland_female_adult_53_years	chr7	130915850	130915885	130915884	+	RAMPAGE_only	7	7	25	1.823248	4.403856	chr7	130915903	130916038	SINE|MIR|MIRc	+	chr7	130913463	130921946	LOC100506860|NR_109780.1	+	130913463,130914961,130915899,130921535	130913625,130915102,130916132,130921946	0.720000
thyroid_gland_female_adult_53_years	chr3	57267779	57267787	57267779	+	RAMPAGE_only	3	3	9	0.656369	2.503258	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	1.000000
thyroid_gland_female_adult_53_years	chr14	81166367	81166383	81166382	-	High_confidence	4	4	8	0.583439	2.521641	chr14	81166191	81166439	LTR|ERVL-MaLR|MLT1J2	+	chr14	81118102	81166296	STRG.110957.6	-	81118102,81142200,81165192,81166112	81142168,81154131,81165381,81166296	0.875000
thyroid_gland_female_adult_53_years	chr1	12409854	12409855	12409854	+	RAMPAGE_only	10	10	15	1.093949	3.521641	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.666667
thyroid_gland_female_adult_53_years	chr1	23417917	23418004	23417917	-	RAMPAGE_only	9	9	41	2.990126	4.177929	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23408559	23419236	TCEA3|ENST00000374602.2	-	23408559,23417248,23417903,23419076	23408726,23417390,23418009,23419236	0.756098
thyroid_gland_female_adult_53_years	chr12	27579368	27579391	27579368	+	RAMPAGE_only	5	5	10	0.729299	2.921928	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	1.000000
thyroid_gland_female_adult_53_years	chr7	111413967	111413977	111413972	-	RAMPAGE_only	4	5	17	1.239808	3.499228	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	111402183	111521447	STRG.68837.4	-	111402183,111403045,111487237,111521312	111402614,111417342,111487341,111521447	0.647059
thyroid_gland_female_adult_53_years	chr11	74328011	74328098	74328074	+	High_confidence	15	15	126	9.189168	6.121135	chr11	74327828	74329146	Retroposon|SVA|SVA_B	+	chr11	74327981	74371877	STRG.93693.1	+	74327981,74329344,74368064	74328472,74329488,74371877	0.873016
thyroid_gland_female_adult_53_years	chr4	184537589	184537596	184537595	-	High_confidence	6	6	12	0.875159	3.084963	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.500000
thyroid_gland_female_adult_53_years	chr2	113222792	113223372	113222973	-	RAMPAGE_only	16	16	536	39.090427	7.324091	chr2	113222501	113223504	LINE|L2|L2a	+	chr2	113218527	113235443	STRG.18633.11	-	113218527,113220091,113225903,113235393	113218609,113225770,113227256,113235443	1.000000
thyroid_gland_female_adult_53_years	chr9	89479889	89479890	89479889	-	High_confidence	51	51	52	3.792355	3.804246	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89402924	89479890	SEMA4D|ENST00000540475.5	-	89402924,89405350,89455887,89479571	89403016,89405699,89455953,89479890	0.961538
thyroid_gland_female_adult_53_years	chr11	122322365	122322384	122322371	-	RAMPAGE_only	3	3	10	0.729299	2.725481	chr11	122322142	122322989	LINE|L2|L2c	+	chr11	122289285	122295206	STRG.96315.5	-	122289285,122293306,122294841	122292403,122294361,122295206	0.500000
thyroid_gland_female_adult_53_years	chr8	27633364	27633377	27633364	+	High_confidence	3	3	7	0.510509	2.521641	chr8	27633291	27633377	SINE|MIR|MIR3	-	chr8	27633342	27673020	STRG.72448.1	+	27633342,27634043,27649701,27651507,27656781,27658495,27670899	27633695,27634207,27649800,27651627,27656880,27659539,27673020	1.000000
thyroid_gland_female_adult_53_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	19	19	19	1.385668	3.326360	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
thyroid_gland_female_adult_53_years	chr17	28233986	28234043	28234030	-	High_confidence	102	103	630	45.945838	6.387310	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28230528	28234049	STRG.122296.1	-	28230528,28233917	28233342,28234049	0.930159
thyroid_gland_female_adult_53_years	chr11	117836297	117836324	117836323	+	High_confidence	3	3	8	0.583439	2.500000	chr11	117836254	117836523	SINE|Alu|AluJb	-	chr11	117836431	117838096	STRG.96094.1	+	117836431,117837167	117836502,117838096	0.750000
thyroid_gland_female_adult_53_years	chr9	73080369	73080370	73080369	-	High_confidence	34	35	35	2.552547	4.675698	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.942857
thyroid_gland_female_adult_53_years	chr1	238485985	238486043	238486028	-	High_confidence	6	8	32	2.333757	4.218139	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480440	238486023	LINC01139|ENST00000649681.1	-	238480440	238486023	1.000000
thyroid_gland_female_adult_53_years	chr5	32403141	32403169	32403148	-	RAMPAGE_only	3	4	14	1.021019	3.546594	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.928571
thyroid_gland_female_adult_53_years	chrX	15602157	15602158	15602157	-	High_confidence	4	4	6	0.437579	2.584963	chrX	15602053	15602111	LINE|CR1|L3	-	chrX	15594886	15602148	ACE2|ENST00000484756.1	-	15594886,15600725,15601955	15595003,15601014,15602148	0.833333
thyroid_gland_female_adult_53_years	chr18	35467071	35467118	35467080	-	High_confidence	41	45	97	7.074200	5.641215	chr18	35467057	35467118	DNA|hAT-Charlie|MER5A	-	chr18	35435292	35467081	STRG.126732.3	-	35435292,35446874,35466623	35438852,35446955,35467081	0.639175
thyroid_gland_female_adult_53_years	chr15	63942991	63942992	63942991	-	High_confidence	107	110	153	11.158275	6.226247	chr15	63942987	63943124	SINE|MIR|MIRb	-	chr15	63907922	63942995	STRG.114967.6	-	63907922,63911907,63912107,63924815,63925940,63926852,63929673,63939231,63942863	63908600,63911991,63912197,63924861,63926093,63929577,63930455,63939361,63942995	0.647059
thyroid_gland_female_adult_53_years	chrX	5726311	5726325	5726324	-	High_confidence	93	100	150	10.939485	4.810340	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.960000
thyroid_gland_female_adult_53_years	chr3	11225885	11225919	11225885	-	High_confidence	4	4	13	0.948089	3.334679	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.846154
thyroid_gland_female_adult_53_years	chr19	49867873	49867885	49867873	-	High_confidence	2	3	8	0.583439	2.750000	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49863730	49867880	PNKP|ENST00000636214.1	-	49863730,49863963,49864178,49864323,49865126,49866398,49867053,49867678	49863760,49864071,49864236,49864403,49865242,49866445,49867217,49867880	0.500000
thyroid_gland_female_adult_53_years	chr4	73144752	73144771	73144752	-	RAMPAGE_only	2	2	7	0.510509	2.521641	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	1.000000
thyroid_gland_female_adult_53_years	chr1	53258318	53258322	53258320	-	RAMPAGE_only	3	5	8	0.583439	2.521641	chr1	53258163	53258293	LINE|L2|L2-3_Crp	-	chr1	53257242	53262497	LRP8|ENST00000460214.5	-	53257242,53258008,53258318,53260463,53262067,53262445	53257464,53258074,53258471,53260605,53262207,53262497	0.500000
thyroid_gland_female_adult_53_years	chr3	69237146	69237172	69237171	-	RAMPAGE_only	4	5	13	0.948089	3.022055	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.615385
thyroid_gland_female_adult_53_years	chr19	20513336	20513378	20513356	-	High_confidence	4	4	25	1.823248	3.970176	chr19	20510335	20518101	LTR|ERV1|HERVE_a-int	-	chr19	20508815	20512748	STRG.129679.1	-	20508815	20512748	0.680000
thyroid_gland_female_adult_53_years	chr11	65430347	65430845	65430775	+	RAMPAGE_only	81	84	665	48.498384	6.075417	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
thyroid_gland_female_adult_53_years	chr3	29280826	29280854	29280853	-	High_confidence	6	7	12	0.875159	2.855389	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.500000
thyroid_gland_female_adult_53_years	chr11	10020275	10020294	10020282	-	RAMPAGE_only	3	3	10	0.729299	2.646439	chr11	10019979	10020694	LTR|ERV1|MER50	+	chr11	9993011	10044606	SBF2|ENST00000527019.5	-	9993011,9993920,10000913,10002556,10028451,10029764,10031047,10042843,10044518	9993103,9993998,10001022,10002689,10028557,10029875,10031170,10042981,10044606	0.600000
thyroid_gland_female_adult_53_years	chrX	102339367	102339368	102339367	-	High_confidence	71	82	90	6.563691	4.379739	chrX	102338893	102340240	LTR|ERV1|MER52A	-	chrX	102337831	102339358	STRG.144508.1	-	102337831	102339358	0.988889
thyroid_gland_female_adult_53_years	chr6	2990740	2990755	2990754	-	RAMPAGE_only	11	11	48	3.500635	4.702379	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.875000
thyroid_gland_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	61	61	61	4.448724	3.625767	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
thyroid_gland_female_adult_53_years	chrX	72305913	72305914	72305913	-	High_confidence	8	9	9	0.656369	2.750000	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	0.777778
thyroid_gland_female_adult_53_years	chr7	47401170	47401197	47401196	-	RAMPAGE_only	14	14	70	5.105093	5.210765	chr7	47401190	47401377	LINE|CR1|L3b	-	chr7	47369496	47403425	TNS3|ENST00000469470.1	-	47369496,47396799,47400392,47400784,47403267	47369621,47396904,47400458,47400914,47403425	0.614286
thyroid_gland_female_adult_53_years	chr4	8436023	8436026	8436023	-	RAMPAGE_only	8	8	17	1.239808	3.852169	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.705882
thyroid_gland_female_adult_53_years	chr19	20214078	20214151	20214119	+	High_confidence	38	42	217	15.825789	6.072312	chr19	20213862	20215311	Retroposon|SVA|SVA_D	+	chr19	20214096	20222463	STRG.129722.2	+	20214096,20219683	20218857,20222463	0.990783
thyroid_gland_female_adult_53_years	chr1	196404347	196404348	196404347	-	High_confidence	7	8	11	0.802229	2.663533	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225795	196404336	STRG.9496.4	-	196225795,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404336	0.909091
thyroid_gland_female_adult_53_years	chr20	18794077	18794086	18794085	+	High_confidence	31	31	75	5.469743	3.690940	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.973333
thyroid_gland_female_adult_53_years	chr6	118651538	118651593	118651592	-	High_confidence	33	33	140	10.210186	5.958046	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.971429
thyroid_gland_female_adult_53_years	chr1	75376268	75376269	75376268	-	RAMPAGE_only	6	6	9	0.656369	2.500000	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.666667
thyroid_gland_female_adult_53_years	chr19	20362471	20362472	20362471	+	High_confidence	30	31	31	2.260827	4.123231	chr19	20362027	20362578	LTR|ERV1|LTR6A	+	chr19	20362555	20371950	STRG.129725.1	+	20362555,20369177	20362794,20371950	0.838710
thyroid_gland_female_adult_53_years	chr2	201116021	201116024	201116021	+	High_confidence	3	3	7	0.510509	2.584963	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.714286
thyroid_gland_female_adult_53_years	chr17	28605048	28605090	28605089	-	High_confidence	21	22	57	4.157004	5.088343	chr17	28603476	28605306	Retroposon|SVA|SVA_D	-	chr17	28592471	28605079	STRG.122318.7	-	28592471,28598509,28598895,28604449	28593066,28598635,28599830,28605079	0.947368
thyroid_gland_female_adult_53_years	chr13	24968346	24968472	24968346	-	High_confidence	23	25	116	8.459869	5.841147	chr13	24967953	24968364	LINE|L1|L1PA15-16	+	chr13	24954701	24968455	STRG.104456.11	-	24954701,24961748,24962277,24967391,24968205	24954869,24961849,24965580,24967453,24968455	0.655172
thyroid_gland_female_adult_53_years	chr6	169654690	169654714	169654695	-	High_confidence	3	3	18	1.312738	3.572469	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169582400	169655364	STRG.61852.2	-	169582400,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197,169651929,169654478	169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649275,169652008,169655364	0.500000
thyroid_gland_female_adult_53_years	chr1	12572757	12572817	12572757	-	RAMPAGE_only	4	4	29	2.114967	4.185230	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.931034
thyroid_gland_female_adult_53_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	42	42	51	3.719425	4.311641	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.784314
thyroid_gland_female_adult_53_years	chr9	129489111	129489141	129489125	+	High_confidence	39	43	138	10.064326	5.749663	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.876812
thyroid_gland_female_adult_53_years	chr15	24920418	24920478	24920434	+	RAMPAGE_only	4	7	22	1.604458	3.481715	chr15	24920380	24920543	DNA|hAT-Charlie|MER5A	-	chr15	24954892	24978723	SNURF|NM_005678.4	+	24954892,24962113,24967931,24974310,24975357,24976304,24976876,24977777,24978192,24978406	24955062,24962209,24968082,24974456,24975509,24976416,24977029,24977916,24978318,24978723	0.500000
thyroid_gland_female_adult_53_years	chr1	51403428	51403490	51403428	-	RAMPAGE_only	9	9	30	2.187897	3.003690	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.966667
thyroid_gland_female_adult_53_years	chr5	50443255	50443259	50443255	-	High_confidence	4	4	8	0.583439	2.500000	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.750000
thyroid_gland_female_adult_53_years	chr9	20658321	20658349	20658348	+	High_confidence	34	59	129	9.407957	5.297000	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658329	20995948	STRG.77284.4	+	20658329,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995948	0.953488
thyroid_gland_female_adult_53_years	chr6	113873339	113873340	113873339	-	High_confidence	11	11	16	1.166878	2.789898	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.812500
thyroid_gland_female_adult_53_years	chr3	114624940	114625007	114624984	-	High_confidence	74	80	510	37.194250	6.018865	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.803922
thyroid_gland_female_adult_53_years	chr20	44696110	44696112	44696111	-	High_confidence	7	11	15	1.093949	2.923231	chr20	44695924	44696275	LTR|ERVL-MaLR|MLT1A0	-	chr20	44695075	44696084	KCNK15-AS1|ENST00000419931.1	-	44695075,44696002	44695507,44696084	0.866667
thyroid_gland_female_adult_53_years	chr1	60949435	60949467	60949443	-	RAMPAGE_only	34	44	95	6.928341	5.230088	chr1	60949259	60949438	SINE|MIR|MIRb	-	chr1	60940238	60970776	NFIA-AS2|ENST00000438559.5	-	60940238,60941179,60952510,60954321,60954484,60963565,60970547	60940631,60941252,60952684,60954370,60954602,60963804,60970776	0.757895
thyroid_gland_female_adult_53_years	chr3	187021850	187021852	187021851	+	High_confidence	114	200	211	15.388209	5.842247	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021854	187042839	ST6GAL1|ENST00000440338.5	+	187021854,187038391,187038741,187042653	187022004,187038491,187038873,187042839	0.630332
thyroid_gland_female_adult_53_years	chr1	53902412	53902424	53902412	-	RAMPAGE_only	9	9	30	2.187897	4.249868	chr1	53901976	53902482	LINE|L2|L2a	+	chr1	53851732	53889834	YIPF1|ENST00000072644.6	-	53851732,53860055,53866199,53866757,53871371,53878314,53878641,53883112,53888906,53889243,53889712	53852270,53860153,53866382,53866924,53871488,53878402,53878722,53883276,53888986,53889463,53889834	0.533333
thyroid_gland_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	186	186	212	15.461139	4.262134	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.976415
thyroid_gland_female_adult_53_years	chr4	4269605	4269614	4269613	-	High_confidence	73	80	223	16.263368	3.861592	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4269627	STRG.35370.2	-	4267700,4268529,4269428	4268023,4268615,4269627	1.000000
thyroid_gland_female_adult_53_years	chr1	196404228	196404273	196404228	-	High_confidence	78	79	328	23.921008	4.883446	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225795	196404336	STRG.9496.4	-	196225795,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404336	0.948171
thyroid_gland_female_adult_53_years	chr11	3477038	3477073	3477055	-	RAMPAGE_only	119	124	606	44.195520	5.827045	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3473450	3478454	STRG.89773.2	-	3473450	3478454	0.975248
thyroid_gland_female_adult_53_years	chr18	49563681	49563707	49563681	+	RAMPAGE_only	4	4	9	0.656369	2.947703	chr18	49563415	49563839	LINE|L2|L2a	-	chr18	49562344	49567763	LIPG|ENST00000579750.1	+	49562344,49565316,49567441	49562405,49565498,49567763	1.000000
thyroid_gland_female_adult_53_years	chr11	108224064	108224075	108224074	+	High_confidence	5	5	9	0.656369	2.725481	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.666667
thyroid_gland_female_adult_53_years	chr9	135444237	135444254	135444253	-	High_confidence	28	28	48	3.500635	5.126629	chr9	135444140	135444321	LTR|ERV1|LTR2C	-	chr9	135437854	135444272	STRG.83682.2	-	135437854,135443411	135443356,135444272	0.958333
thyroid_gland_female_adult_53_years	chr5	151158473	151158499	151158498	-	High_confidence	3	3	9	0.656369	2.947703	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.777778
thyroid_gland_female_adult_53_years	chr2	107529485	107529512	107529489	+	High_confidence	41	53	149	10.866555	5.772880	chr2	107529145	107529729	LTR|ERV1|LTR9	-	chr2	107529486	107538536	STRG.18205.2	+	107529486	107538536	0.859060
thyroid_gland_female_adult_53_years	chr10	45000453	45000515	45000503	+	High_confidence	8	10	32	2.333757	4.582913	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.906250
thyroid_gland_female_adult_53_years	chr1	183355225	183355270	183355262	-	High_confidence	87	96	330	24.066867	4.549632	chr1	183355138	183355282	LINE|L2|L2c	+	chr1	183248236	183355324	STRG.9224.3	-	183248236,183261001,183261201,183278552,183283994,183284709,183286661,183290127,183292789,183293704,183355166	183252743,183261069,183261303,183278629,183284039,183284790,183286788,183290206,183292857,183293793,183355324	0.954545
thyroid_gland_female_adult_53_years	chr8	99892029	99892057	99892056	-	RAMPAGE_only	71	71	160	11.668784	4.805084	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
thyroid_gland_female_adult_53_years	chr9	83947757	83947806	83947805	+	High_confidence	6	7	33	2.406687	4.210765	chr9	83947512	83949108	Retroposon|SVA|SVA_B	+	chr9	83948015	83948302	STRG.80069.1	+	83948015	83948302	0.818182
thyroid_gland_female_adult_53_years	chr8	102930170	102930183	102930182	+	High_confidence	4	4	11	0.802229	3.121928	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.909091
thyroid_gland_female_adult_53_years	chr6	43025287	43025312	43025311	+	High_confidence	2	2	6	0.437579	2.584963	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	0.666667
thyroid_gland_female_adult_53_years	chr8	32927967	32927979	32927967	+	RAMPAGE_only	35	36	103	7.511780	5.534194	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.747573
thyroid_gland_female_adult_53_years	chr9	124804317	124804339	124804338	+	RAMPAGE_only	2	2	7	0.510509	2.584963	chr9	124804356	124804442	DNA|hAT-Charlie|MER58B	+	chr9	124800873	124814891	OLFML2A|NM_001282715.1	+	124800873,124801413,124804093,124807780,124809807	124801074,124801663,124804342,124807966,124814891	0.857143
thyroid_gland_female_adult_53_years	chr10	17181946	17181950	17181946	-	RAMPAGE_only	6	6	12	0.875159	3.084963	chr10	17181841	17182407	LTR|ERVL-MaLR|MLT1K	+	chr10	17157443	17174660	TRDMT1|ENST00000313936.14	-	17157443,17159145,17160304,17168840,17174550	17157784,17159229,17160374,17168917,17174660	0.583333
thyroid_gland_female_adult_53_years	chr1	44738065	44738081	44738065	+	High_confidence	4	4	11	0.802229	2.732159	chr1	44738044	44739134	Retroposon|SVA|SVA_B	+	chr1	44738332	44738829	STRG.2394.1	+	44738332	44738829	0.909091
thyroid_gland_female_adult_53_years	chr20	50267479	50267511	50267487	+	High_confidence	3	3	12	0.875159	3.084963	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	1.000000
thyroid_gland_female_adult_53_years	chr1	20639954	20639976	20639975	+	RAMPAGE_only	7	7	15	1.093949	2.822580	chr1	20640002	20640112	LINE|L2|L2b	+	chr1	20638128	20651316	PINK1|ENST00000492302.1	+	20638128,20644489,20645559,20648504,20650433	20639992,20644672,20645723,20649231,20651316	0.800000
thyroid_gland_female_adult_53_years	chr6	77369134	77369167	77369166	-	High_confidence	25	29	78	5.688532	5.121370	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77273025	77369098	STRG.56720.2	-	77273025,77350621,77368885	77273307,77350734,77369098	0.858974
thyroid_gland_female_adult_53_years	chr16	30354663	30354680	30354663	-	High_confidence	4	4	15	1.093949	2.638460	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.933333
thyroid_gland_female_adult_53_years	chr14	100291579	100291633	100291603	-	High_confidence	4	5	22	1.604458	4.004886	chr14	100291489	100291554	SINE|MIR|MIR1_Amn	-	chr14	100279958	100291456	AL157871.6|ENST00000553954.1	-	100279958,100291357	100280065,100291456	0.727273
thyroid_gland_female_adult_53_years	chr6	79631434	79631503	79631441	+	High_confidence	13	14	39	2.844266	4.455543	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
thyroid_gland_female_adult_53_years	chr11	119046588	119046605	119046604	-	RAMPAGE_only	7	12	29	2.114967	3.016678	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119044191	119048825	STRG.96181.7	-	119044191,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713	119045654,119045834,119046467,119046802,119047818,119048080,119048370,119048563,119048825	0.965517
thyroid_gland_female_adult_53_years	chr14	95516120	95516123	95516122	+	High_confidence	9	19	22	1.604458	3.558519	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.954545
thyroid_gland_female_adult_53_years	chr14	81170372	81170414	81170392	-	High_confidence	34	34	181	13.200312	5.745147	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.922652
thyroid_gland_female_adult_53_years	chr2	227534913	227534941	227534913	+	RAMPAGE_only	2	2	9	0.656369	2.725481	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227472371	227554545	STRG.24248.6	+	227472371,227491546,227519947,227523762,227524761,227531090,227533548,227551958,227553709,227554435	227472588,227491640,227520063,227523925,227524915,227531210,227536993,227552117,227553795,227554545	0.555556
thyroid_gland_female_adult_53_years	chr8	143039246	143039267	143039266	+	High_confidence	29	29	76	5.542672	4.964537	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.828947
thyroid_gland_female_adult_53_years	chr11	61588377	61588395	61588394	-	RAMPAGE_only	4	4	9	0.656369	2.750000	chr11	61588272	61588409	SINE|MIR|MIRb	-	chr11	61513715	61580872	SYT7|NM_001300773.1	-	61513715,61523074,61523826,61524362,61527914,61532988,61547176,61551383,61556103,61580789	61518731,61523274,61523941,61524532,61528185,61533124,61547308,61551463,61556207,61580872	0.666667
thyroid_gland_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	1629	1804	4654	339.415760	4.924175	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.981736
thyroid_gland_female_adult_53_years	chr14	80957093	80957170	80957164	+	RAMPAGE_only	11	11	85	6.199042	5.559522	chr14	80957036	80957463	LINE|L2|L2c	+	chr14	80955654	81108918	TSHR|ENST00000554263.5	+	80955654,81062147,81068253,81087953,81091068,81092530,81096638,81108374	80955850,81062219,81068328,81088028,81091143,81092608,81096707,81108918	0.517647
thyroid_gland_female_adult_53_years	chr2	113220416	113220593	113220548	-	High_confidence	10	10	115	8.386939	4.791406	chr2	113220427	113220543	SINE|MIR|MIR	-	chr2	113218468	113220477	PAX8|ENST00000480684.1	-	113218468,113220091	113218609,113220477	0.913043
thyroid_gland_female_adult_53_years	chr14	30690379	30690392	30690391	+	RAMPAGE_only	3	3	8	0.583439	2.521641	chr14	30684809	30690837	LINE|L1|L1HS	-	chr14	30676125	30705885	SCFD1|ENST00000554486.1	+	30676125,30694772,30700187,30702295,30705822	30676633,30694869,30700258,30702375,30705885	0.875000
thyroid_gland_female_adult_53_years	chr6	144533105	144533113	144533105	+	RAMPAGE_only	6	6	17	1.239808	3.155639	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144322625	144561052	STRG.60394.5	+	144322625,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156	144331018,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144561052	0.823529
thyroid_gland_female_adult_53_years	chr9	69122987	69123016	69122987	+	High_confidence	3	3	15	1.093949	2.699514	chr9	69122999	69123107	DNA|hAT-Charlie|MER5A1	+	chr9	69123047	69246746	TJP2|ENST00000647986.1	+	69123047,69151650,69185086,69212547,69216338,69218256,69220886,69225303,69226021,69227764,69227980,69229183,69230081,69234438,69236027,69236948,69237877,69238709,69239936,69246689	69123113,69151771,69185204,69212601,69216463,69218359,69221496,69225407,69226175,69227873,69228114,69229250,69230232,69234547,69236238,69237136,69237973,69238789,69240147,69246746	0.800000
thyroid_gland_female_adult_53_years	chr20	24930628	24930676	24930639	+	High_confidence	119	123	1137	82.921298	6.614059	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930641	24932983	STRG.134266.1	+	24930641,24931346,24932741	24930774,24932719,24932983	0.976253
thyroid_gland_female_adult_53_years	chr1	45522855	45522859	45522858	-	High_confidence	8	8	13	0.948089	3.251629	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.923077
thyroid_gland_female_adult_53_years	chr15	63942942	63942943	63942942	-	High_confidence	298	305	319	23.264638	6.775303	chr15	63942686	63942977	LINE|L2|L2c	+	chr15	63907922	63942995	STRG.114967.6	-	63907922,63911907,63912107,63924815,63925940,63926852,63929673,63939231,63942863	63908600,63911991,63912197,63924861,63926093,63929577,63930455,63939361,63942995	0.742947
thyroid_gland_female_adult_53_years	chr16	87381451	87381483	87381451	-	RAMPAGE_only	3	4	12	0.875159	3.084963	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87326986	87383757	FBXO31|ENST00000311635.11	-	87326986,87333885,87335303,87336154,87342876,87343597,87347173,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87360366,87383757	0.583333
thyroid_gland_female_adult_53_years	chr7	158863400	158863419	158863400	+	RAMPAGE_only	3	4	8	0.583439	2.750000	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.875000
thyroid_gland_female_adult_53_years	chrX	16712889	16712929	16712889	-	High_confidence	7	7	19	1.385668	3.932138	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.842105
thyroid_gland_female_adult_53_years	chr11	44564415	44564427	44564426	+	High_confidence	7	7	15	1.093949	3.182006	chr11	44564373	44564477	SINE|MIR|MIRc	+	chr11	44564426	44620229	STRG.92153.2	+	44564426,44587474,44594642,44600157,44605057,44605354,44615271,44618161,44618639,44619048	44564502,44587556,44594725,44600230,44605182,44605429,44615373,44618365,44618723,44620229	0.933333
thyroid_gland_female_adult_53_years	chr5	34244811	34244814	34244813	-	High_confidence	5	8	10	0.729299	2.725481	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34173730	34244885	STRG.44728.8	-	34173730,34175821,34179012,34182679,34218294,34219916,34244615	34175537,34175957,34179097,34182867,34218450,34219950,34244885	0.600000
thyroid_gland_female_adult_53_years	chr14	102235451	102235459	102235451	-	High_confidence	4	4	12	0.875159	2.732159	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.583333
thyroid_gland_female_adult_53_years	chr7	80369673	80369674	80369673	+	High_confidence	10	10	11	0.802229	2.921928	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.636364
thyroid_gland_female_adult_53_years	chr4	79493261	79493284	79493261	+	High_confidence	5	5	13	0.948089	2.918296	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.692308
thyroid_gland_female_adult_53_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	6	6	9	0.656369	2.750000	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.888889
thyroid_gland_female_adult_53_years	chr5	156972307	156972348	156972347	-	High_confidence	13	13	51	3.719425	4.308037	chr5	156972200	156972374	LTR|ERVL-MaLR|MLT1M	-	chr5	156948273	156972344	STRG.51351.1	-	156948273,156948415,156949650,156951511,156954414,156972242	156948320,156948499,156949731,156951790,156954756,156972344	0.980392
thyroid_gland_female_adult_53_years	chr1	23935188	23935216	23935200	+	High_confidence	8	11	46	3.354775	4.582901	chr1	23934958	23936501	Retroposon|SVA|SVA_D	+	chr1	23935209	23936680	STRG.1150.1	+	23935209,23935904	23935808,23936680	0.913043
thyroid_gland_female_adult_53_years	chr21	28048446	28048447	28048446	+	High_confidence	9	9	9	0.656369	2.725481	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	1.000000
thyroid_gland_female_adult_53_years	chr11	61249407	61249454	61249453	+	High_confidence	4	4	18	1.312738	3.392147	chr11	61249400	61249513	LINE|L2|L2a	+	chr11	61249332	61251418	PGA5|ENST00000541528.1	+	61249332,61249915,61251131	61249813,61250014,61251418	0.944444
thyroid_gland_female_adult_53_years	chr11	57425862	57425889	57425888	-	High_confidence	3	4	11	0.802229	3.095795	chr11	57425746	57425858	LINE|CR1|L3	-	chr11	57417879	57425856	SLC43A3|ENST00000529113.5	-	57417879,57420971,57421296,57423981,57425540	57417887,57421064,57421373,57424028,57425856	0.818182
thyroid_gland_female_adult_53_years	chr11	71745875	71745936	71745935	+	High_confidence	116	118	690	50.321632	6.513613	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.971014
thyroid_gland_female_adult_53_years	chr19	49086488	49086547	49086546	+	High_confidence	24	26	40	2.917196	4.143943	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	1.000000
thyroid_gland_female_adult_53_years	chr2	113117892	113117971	113117970	+	High_confidence	7	10	33	2.406687	4.304229	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.909091
thyroid_gland_female_adult_53_years	chr7	154928503	154928506	154928503	+	High_confidence	13	13	25	1.823248	4.105389	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.720000
thyroid_gland_female_adult_53_years	chr8	109487659	109487740	109487739	+	RAMPAGE_only	6	7	26	1.896177	4.183465	chr8	109487732	109487857	SINE|Alu|FLAM_C	+	chr8	109362476	109509416	STRG.75232.4	+	109362476,109364546,109381369,109382462,109384069,109385536,109388496,109389078,109390451,109394414,109396026,109398458,109400075,109401496,109404553,109404994,109406334,109408048,109409864,109412264,109413420,109419096,109420517,109425084,109427001,109429339,109429931,109433105,109435189,109436337,109438896,109441274,109442945,109444660,109448142,109450974,109452123,109452717,109454166,109454722,109456261,109459594,109461771,109464215,109475117,109476507,109477224,109481432,109482986,109485043,109486647,109490971,109491872,109493660,109497149,109498461,109498654,109508096	109362653,109364636,109381514,109382571,109384127,109385630,109388550,109389152,109390494,109394485,109396137,109398548,109400344,109401588,109404713,109405130,109406478,109408206,109409978,109412414,109413545,109419260,109420690,109425232,109427156,109429462,109430037,109433216,109435354,109438456,109440852,109442195,109443902,109445645,109449487,109451149,109452280,109452874,109454246,109454852,109456391,109459836,109461908,109466769,109475269,109476667,109480139,109481562,109483105,109485173,109490055,109491101,109491994,109497067,109497272,109498573,109507895,109509416	0.923077
thyroid_gland_female_adult_53_years	chr5	117455061	117455068	117455061	+	High_confidence	3	3	7	0.510509	2.807355	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.714286
thyroid_gland_female_adult_53_years	chr1	31654253	31654301	31654253	-	RAMPAGE_only	5	5	18	1.312738	3.836592	chr1	31654231	31654348	LINE|L2|L2c	+	chr1	31652587	31663456	COL16A1|ENST00000488897.5	-	31652587,31653598,31653866,31654791,31655313,31656097,31657032,31658487,31658913,31660584,31661065,31661413,31661659,31662333,31662586	31652853,31653676,31654043,31654858,31655502,31656444,31657068,31658577,31658964,31660638,31661119,31661458,31661704,31662387,31663456	0.833333
thyroid_gland_female_adult_53_years	chr11	67848662	67848702	67848701	-	High_confidence	31	31	110	8.022289	5.503136	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67845199	67848774	STRG.93194.1	-	67845199,67848565	67847989,67848774	0.927273
thyroid_gland_female_adult_53_years	chr2	187461965	187461966	187461965	+	High_confidence	22	22	22	1.604458	3.754442	chr2	187461411	187462268	LTR|ERV1|LTR1A2	+	chr2	187461957	187499991	STRG.21667.1	+	187461957,187499505	187462016,187499991	0.545455
thyroid_gland_female_adult_53_years	chr3	15738511	15738512	15738511	+	High_confidence	347	364	365	26.619414	4.748337	chr3	15738158	15739435	LTR|ERVK|MER11B	-	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.994521
thyroid_gland_female_adult_53_years	chr8	4622423	4622432	4622423	-	RAMPAGE_only	3	3	8	0.583439	2.521641	chr8	4622066	4622669	LTR|ERVL|LTR41C	-	chr8	4419596	4420067	STRG.71319.1	-	4419596	4420067	0.500000
thyroid_gland_female_adult_53_years	chr15	85719298	85719308	85719307	+	RAMPAGE_only	3	4	8	0.583439	2.807355	chr15	85719357	85719584	SINE|MIR|MIRb	+	chr15	85717151	85727247	AKAP13|ENST00000558644.2	+	85717151,85718012,85719075,85721990,85722229,85723071,85726409,85727065	85717402,85718159,85719326,85722116,85722347,85723320,85726486,85727247	0.875000
thyroid_gland_female_adult_53_years	chr17	47056730	47056736	47056735	-	RAMPAGE_only	6	6	13	0.948089	3.180833	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.923077
thyroid_gland_female_adult_53_years	chr6	150398857	150399113	150398857	+	RAMPAGE_only	17	17	236	17.211457	5.420347	chr6	150398759	150399060	SINE|Alu|AluSx	+	chr6	150368891	150405969	IYD|ENST00000344419.7	+	150368891,150389351,150392344,150394098,150398054	150369209,150389543,150392504,150394255,150405969	0.987288
thyroid_gland_female_adult_53_years	chr17	2975656	2975667	2975666	+	RAMPAGE_only	10	17	44	3.208916	4.686704	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2980317	3037741	STRG.121049.1	+	2980317,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037741	0.886364
thyroid_gland_female_adult_53_years	chr11	74328206	74328234	74328233	+	High_confidence	4	5	13	0.948089	3.700440	chr11	74327828	74329146	Retroposon|SVA|SVA_B	+	chr11	74327981	74371877	STRG.93693.1	+	74327981,74329344,74368064	74328472,74329488,74371877	0.692308
thyroid_gland_female_adult_53_years	chr9	64019197	64019199	64019198	+	High_confidence	13	22	26	1.896177	4.001629	chr9	64018820	64020467	LINE|L1|L1PB	-	chr9	64019211	64083836	STRG.79165.2	+	64019211,64024164,64026112,64054475,64060143,64075394,64075668,64078962,64080898,64083683	64019334,64024300,64026230,64054751,64060381,64075509,64075846,64079159,64081034,64083836	0.769231
thyroid_gland_female_adult_53_years	chr15	88635631	88635655	88635654	+	High_confidence	13	13	34	2.479617	4.210765	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.823529
thyroid_gland_female_adult_53_years	chr2	85319377	85319379	85319378	-	RAMPAGE_only	4	9	9	0.656369	2.725481	chr2	85319170	85319474	SINE|Alu|AluSc	-	chr2	85318026	85328251	TGOLN2|ENST00000398263.6	-	85318026,85324914,85326507,85326978,85327916	85322741,85324998,85326804,85327685,85328251	1.000000
thyroid_gland_female_adult_53_years	chr9	111284874	111284875	111284874	-	High_confidence	13	13	18	1.312738	2.984234	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.833333
thyroid_gland_female_adult_53_years	chr11	74328364	74328388	74328387	+	High_confidence	7	7	21	1.531528	3.077573	chr11	74327828	74329146	Retroposon|SVA|SVA_B	+	chr11	74327981	74371877	STRG.93693.1	+	74327981,74329344,74368064	74328472,74329488,74371877	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	9503533	9503538	9503535	-	High_confidence	4	5	10	0.331224	2.947703	chr1	9503513	9503575	LINE|CR1|L3	+	chr1	9501091	9503471	AL928921.1|ENST00000441033.1	-	9501091,9503220	9501548,9503471	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	65433906	65434055	65433906	+	RAMPAGE_only	9	9	115	3.809073	5.748722	chr11	65433870	65434194	LINE|L1|L1ME3F	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.982609
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	89889028	89889077	89889028	+	RAMPAGE_only	43	45	115	3.809073	4.841446	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.652174
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	26260865	26260910	26260867	+	High_confidence	5	9	19	0.629325	2.860321	chr2	26260732	26261182	LTR|ERVL-MaLR|MLT1M	-	chr2	26260537	26290464	HADHB|ENST00000494615.1	+	26260537,26263379,26269952,26273650,26277072,26278613,26279134,26279993,26282844,26283003,26284116,26284882,26285406,26289917	26261593,26263479,26269997,26273750,26277160,26278801,26279315,26280115,26282924,26283051,26284204,26284957,26285571,26290464	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	65434114	65434286	65434285	+	RAMPAGE_only	37	38	129	4.272786	5.916244	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.976744
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	98891572	98891599	98891572	-	High_confidence	2	2	8	0.264979	2.500000	chr4	98891322	98891802	LINE|L1|L1MB2	+	chr4	98887162	98891571	EIF4E|ENST00000505829.1	-	98887162,98887888,98891236	98887192,98887952,98891571	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	39809803	39809859	39809858	-	High_confidence	13	18	66	2.186076	4.436049	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.818182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	154327183	154327201	154327183	+	RAMPAGE_only	4	4	9	0.298101	3.000000	chrX	154327074	154327312	SINE|MIR|MIRb	+	chrX	154305056	154330350	TKTL1|ENST00000369912.2	+	154305056,154309344,154310835,154311110,154312579,154315172,154320756,154323206,154325338,154327590,154327838,154329515	154305421,154309442,154311027,154311238,154312773,154315337,154320913,154323337,154325422,154327687,154327958,154330350	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	57746128	57746129	57746128	+	High_confidence	9	9	9	0.298101	3.169925	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	21833817	21833836	21833817	-	High_confidence	4	4	15	0.496836	2.985228	chr1	21833729	21833783	LINE|L2|L2c	-	chr1	21829992	21833577	HSPG2|ENST00000635682.1	-	21829992,21830981,21831214,21831462,21831651,21832494,21832874,21833267,21833466	21830091,21831090,21831324,21831562,21831796,21832606,21832892,21833384,21833577	0.933333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	48590006	48590053	48590029	+	RAMPAGE_only	6	6	23	0.761815	4.436605	chrX	48589881	48590353	LTR|ERVL|LTR75	+	chrX	48597477	48608867	WDR13|ENST00000376729.9	+	48597477,48597957,48598716,48599352,48599586,48600318,48601783,48602064,48604271,48604847	48597614,48598037,48598957,48599462,48599717,48600626,48601964,48602206,48604390,48608867	0.652174
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	39874066	39874067	39874066	-	RAMPAGE_only	9	9	12	0.397468	3.084963	chr22	39873891	39874245	LTR|ERVL-MaLR|THE1B	-	chr22	39743043	39893790	ENTHD1|NM_152512.3	-	39743043,39765222,39820992,39835839,39861764,39887399,39893694	39744283,39765609,39821113,39835958,39862007,39887903,39893790	0.916667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	146222301	146222319	146222301	-	High_confidence	14	15	38	1.258650	4.609384	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146206586	146222371	PLSCR4|ENST00000498625.1	-	146206586,146220814,146222064	146206761,146220925,146222371	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	82139698	82139735	82139708	-	High_confidence	6	6	27	0.894304	4.430632	chr16	82139255	82145258	LINE|L1|L1PA2	+	chr16	82044370	82139631	AC092142.1|ENST00000567021.1	-	82044370,82063092,82070802,82139588	82044608,82063253,82071189,82139631	0.629630
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	56157332	56157411	56157351	+	High_confidence	10	10	88	2.914769	4.206372	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.897727
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	6200176	6200197	6200196	+	RAMPAGE_only	7	7	14	0.463713	3.392747	chr10	6200061	6200209	SINE|MIR|MIR3	+	chr10	6202865	6228284	PFKFB3|ENST00000317350.8	+	6202865,6213622,6215220,6216124,6216705,6217134,6219568,6220657,6221380,6221640,6222854,6223957,6224148,6226191,6228195	6203336,6213748,6215317,6216191,6216780,6217191,6219693,6220865,6221527,6221745,6222984,6224020,6224213,6226365,6228284	0.928571
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	169182827	169182833	169182832	-	High_confidence	7	7	22	0.728692	4.095795	chr6	169182607	169182961	LTR|ERVL-MaLR|THE1A	-	chr6	169175303	169182740	LINC02544|ENST00000564830.2	-	169175303,169179275,169182683	169175671,169179394,169182740	0.772727
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	43482932	43482949	43482932	-	RAMPAGE_only	2	2	8	0.264979	3.000000	chr2	43482863	43483049	SINE|MIR|MIRc	-	chr2	43344156	43463259	THADA|ENST00000485353.5	-	43344156,43397970,43428099,43430212,43463033	43344237,43398139,43428231,43430302,43463259	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	30863393	30863414	30863413	+	RAMPAGE_only	8	9	15	0.496836	3.521641	chr13	30863143	30863642	LTR|ERVL|MER74A	+	chr13	30906174	30925572	MEDAG|NM_032849.3	+	30906174,30917402,30921013,30921560,30924310	30906793,30917512,30921126,30921846,30925572	0.533333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	71198195	71198212	71198195	-	High_confidence	4	4	12	0.397468	3.095795	chrX	71198068	71198187	SINE|MIR|MIR3	-	chrX	71183558	71198175	AL590764.1|ENST00000450860.1	-	71183558,71197908	71184017,71198175	0.583333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	3473013	3473063	3473039	+	High_confidence	21	26	54	1.788608	4.892534	chr2	3472789	3473098	LTR|ERV1|MER31B	-	chr2	3472420	3479567	TRAPPC12|ENST00000469400.1	+	3472420,3477694,3478845,3479218	3472602,3477795,3478933,3479567	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	6016515	6016542	6016541	-	RAMPAGE_only	4	6	16	0.529958	3.202820	chr12	6016356	6016502	SINE|MIR|MIR3	-	chr12	6004803	6124665	MSTRG.4707.10	-	6004803,6012086,6013480,6016088,6016515,6016753,6018364,6021899,6022739,6023630,6025579,6025905,6029341,6031443,6034687,6036387,6044290,6046722,6052542,6056856,6057848,6062953,6064245,6065136,6071296,6072330,6073618,6075334,6095459,6110373,6110865,6121173,6122724,6124420	6011794,6012130,6013645,6016232,6016656,6016870,6019743,6022035,6022898,6023787,6025693,6026046,6029488,6031578,6034826,6036491,6044451,6046817,6052783,6057072,6058044,6063054,6064384,6065273,6071343,6072442,6073741,6075551,6095584,6110582,6110968,6121338,6123196,6124665	0.937500
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	150153268	150153287	150153271	+	RAMPAGE_only	14	17	40	1.324895	4.576618	chr5	150153259	150153413	LINE|CR1|L3b	+	chr5	150166780	150184558	CDX1|NM_001804.2	+	150166780,150182767,150183473	150167321,150182913,150184558	0.950000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	112935972	112935973	112935972	-	High_confidence	12	13	16	0.529958	3.750000	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	127514496	127514507	127514496	-	RAMPAGE_only	6	6	12	0.397468	3.095795	chr2	127513896	127514997	LTR|ERV1|LTR27E	+	chr2	127504997	127526466	IWS1|ENST00000495369.1	-	127504997,127526410	127505752,127526466	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	130978880	130978881	130978880	-	High_confidence	4	4	7	0.231857	2.584963	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	19126400	19126424	19126423	-	RAMPAGE_only	5	5	15	0.496836	3.664498	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19108374	19127475	MSTRG.22799.1	-	19108374,19116358,19118320,19119649,19120879,19123564,19126113,19126396,19127418	19108747,19116649,19118455,19119831,19121165,19123647,19126309,19126448,19127475	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	176411458	176411459	176411458	-	RAMPAGE_only	6	6	7	0.231857	2.584963	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	152243808	152243814	152243808	+	High_confidence	2	4	9	0.298101	2.947703	chr3	152243797	152244104	SINE|Alu|AluSx1	-	chr3	152243827	152300110	MBNL1|ENST00000477171.1	+	152243827,152244320,152299404	152244040,152244440,152300110	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	86981263	86981264	86981263	+	RAMPAGE_only	8	8	8	0.264979	2.750000	chr10	86981077	86981384	LTR|ERVL-MaLR|THE1C	+	chr10	86970740	87010126	AGAP11|ENST00000433214.2	+	86970740,86983139,86983853,86992246,86993361,86994823,86999448,87000318,87001635,87004324,87007654,87008354	86970915,86983240,86983941,86992469,86993552,86994903,86999591,87000434,87001736,87004360,87007706,87010126	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	102431237	102431250	102431247	-	High_confidence	12	15	51	1.689241	4.663465	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.960784
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	70154099	70154134	70154133	+	High_confidence	7	7	23	0.761815	3.849224	chr4	70153923	70154270	LINE|RTE-X|L4_A_Mam	-	chr4	70154186	70164939	PRR27|ENST00000344526.9	+	70154186,70156053,70158327,70161585,70162694	70154426,70156077,70158900,70161630,70164939	0.956522
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	50924078	50924079	50924078	+	High_confidence	7	11	11	0.364346	3.277613	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	16712869	16712919	16712889	-	High_confidence	26	28	126	4.173419	6.199192	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.968254
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	33838239	33838281	33838239	+	RAMPAGE_only	3	4	14	0.463713	3.238901	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.785714
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	62553775	62553796	62553795	+	RAMPAGE_only	4	4	17	0.563080	3.577820	chr5	62553752	62554029	SINE|Alu|AluSx1	-	chr5	62578734	62628589	IPO11-LRRC70|NR_073584.1	+	62578734,62591576,62601763,62627153	62578935,62591672,62601848,62628589	0.882353
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	103746672	103746697	103746696	+	RAMPAGE_only	3	3	8	0.264979	2.521641	chr12	103746733	103746888	SINE|MIR|MIRc	+	chr12	103587290	103766724	STAB2|NM_017564.9	+	103587290,103590896,103594394,103620467,103622041,103631597,103637110,103638015,103640122,103648689,103650495,103652555,103654554,103655250,103655455,103660330,103660682,103662845,103666290,103668642,103669540,103670695,103673906,103675927,103677452,103683204,103684988,103688167,103689845,103690423,103692811,103695549,103695736,103699095,103703147,103704557,103705631,103706791,103708440,103711470,103712366,103713642,103715814,103717769,103724974,103726115,103727266,103728848,103730115,103731575,103733005,103735490,103737633,103739411,103740629,103742404,103745172,103746596,103748962,103750578,103753219,103755301,103755611,103758169,103759132,103761299,103762273,103763491,103766285	103587557,103591030,103594510,103620553,103622111,103631693,103637236,103638212,103640256,103648823,103650578,103652705,103654698,103655307,103655581,103660384,103660763,103662998,103666353,103668729,103669627,103670807,103674087,103676021,103677611,103683300,103685084,103688215,103689982,103690538,103692889,103695648,103695844,103699227,103703276,103704614,103705727,103706987,103708536,103711516,103712443,103713768,103715888,103717841,103725094,103726163,103727350,103728995,103730256,103731635,103733182,103735580,103737780,103739468,103740756,103742554,103745277,103746704,103749156,103750720,103753353,103755467,103755718,103758289,103759273,103761410,103762402,103763608,103766724	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	97241169	97241177	97241169	+	RAMPAGE_only	7	7	13	0.430591	3.026987	chr2	97241018	97241180	LINE|L2|L2c	+	chr2	97212726	97249050	ANKRD36|ENST00000421946.2	+	97212726,97213541,97215300,97215424,97217176,97217299,97219049,97219173,97224808,97233729,97241265,97243845,97245156,97247475	97213447,97213614,97215329,97215497,97217205,97217372,97219078,97219246,97224879,97233871,97241479,97244029,97246071,97249050	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	55228156	55228159	55228158	-	RAMPAGE_only	6	9	14	0.463713	3.664498	chr2	55228053	55228212	LINE|L2|L2c	+	chr2	55175648	55232158	CLHC1|ENST00000407122.5	-	55175648,55177601,55180509,55181569,55206269,55208625,55209403,55209629,55212672,55217810,55222234,55232003	55175986,55177781,55180712,55181744,55206376,55208710,55209516,55209831,55212806,55217998,55222493,55232158	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	1655378	1655410	1655409	-	RAMPAGE_only	11	14	25	0.828059	4.403856	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	0.960000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	34233920	34233921	34233920	+	RAMPAGE_only	37	37	53	1.755486	5.079965	chr9	34233518	34234003	LINE|L2|L2a	-	chr9	34220438	34252522	UBAP1|ENST00000359544.2	+	34220438,34220907,34234215,34241184,34249778,34250657,34251391	34220467,34220948,34234340,34242108,34249961,34250759,34252522	0.981132
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	97366678	97366680	97366679	+	High_confidence	11	16	24	0.794937	4.251629	chr4	97366483	97367057	LTR|ERVL-MaLR|MLT1E1A	+	chr4	97366925	97490164	STPG2-AS1|NR_102713.1	+	97366925,97439353,97441409,97463544,97489773,97489995	97366988,97439421,97441559,97463592,97489812,97490164	0.583333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	55255762	55255769	55255768	-	High_confidence	12	13	28	0.927426	4.363713	chr19	55255671	55256025	LINE|L2|L2b	+	chr19	55245343	55255769	PPP6R1|ENST00000592242.1	-	55245343,55245491,55246876,55255674	55245402,55245678,55247109,55255769	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	102779843	102779855	102779854	+	RAMPAGE_only	3	3	6	0.198734	2.584963	chr10	102779736	102779930	LINE|L2|L2c	-	chr10	102776248	102816267	WBP1L|ENST00000369889.5	+	102776248,102797992,102809892,102812594	102776417,102798095,102810054,102816267	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	104254460	104254480	104254460	+	High_confidence	3	4	9	0.298101	2.500000	chr10	104253808	104254461	LTR|ERV1|MER4CL34	-	chr10	104254709	104267459	GSTO1|ENST00000369710.8	+	104254709,104255162,104259575,104266083,104267251	104254962,104255271,104259798,104266190,104267459	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	81939905	81939916	81939915	+	RAMPAGE_only	2	2	7	0.231857	2.584963	chr16	81939853	81939915	LINE|L2|L2	+	chr16	81785989	81958020	PLCG2|ENST00000359376.7	+	81785989,81854443,81858262,81859115,81869213,81870851,81880909,81883268,81889171,81891471,81893708,81895806,81900611,81905402,81907684,81908415,81910519,81912596,81919483,81921197,81923484,81927081,81928557,81931496,81934428,81936168,81937757,81938800,81939891,81946174,81956694,81956848,81957955	81786182,81854587,81858356,81859163,81869298,81870935,81880953,81883341,81889273,81891590,81893794,81895927,81900780,81905507,81907774,81908591,81910720,81912716,81919664,81921269,81923594,81927178,81928624,81931654,81934531,81936378,81937903,81938915,81940059,81946263,81956847,81956879,81958020	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	110440313	110440374	110440313	-	RAMPAGE_only	6	12	38	1.258650	4.984770	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.973684
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	9668138	9668156	9668155	+	RAMPAGE_only	2	3	7	0.231857	2.584963	chr12	9668111	9668674	LINE|L1|L1MEg1	+	chr12	9648046	9692883	MSTRG.4797.12	+	9648046,9653682,9655872,9656920,9680922,9687901,9692827	9648933,9653808,9655979,9669795,9681033,9688086,9692883	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	108224068	108224075	108224074	+	High_confidence	159	162	253	8.379960	6.537871	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.707510
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	54573001	54573002	54573001	+	High_confidence	6	6	6	0.198734	2.584963	chr19	54572997	54573273	SINE|Alu|AluJr	-	chr19	54572996	54587560	LILRA2|NM_006866.3	+	54572996,54573697,54574075,54574300,54574730,54575255,54575806,54587200	54573435,54573912,54574111,54574582,54575033,54575552,54576109,54587560	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	77980141	77980145	77980141	+	RAMPAGE_only	24	25	36	1.192405	4.096892	chr12	77979813	77980297	LTR|ERV1|LOR1a	-	chr12	77966275	78006766	NAV3|ENST00000550503.1	+	77966275,77968518,77998336,78006418	77966301,77968702,77998476,78006766	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	128684459	128684485	128684476	-	RAMPAGE_only	13	13	57	1.887975	4.635718	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.719298
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	127084194	127084222	127084214	-	High_confidence	5	5	25	0.828059	4.262692	chr2	127084080	127084233	DNA|hAT-Charlie|MER5A1	+	chr2	127048022	127084550	BIN1|NM_001320642.1	-	127048022,127050420,127050801,127051153,127052254,127053421,127053904,127057472,127059010,127062114,127063570,127063932,127068162,127068923,127069994,127070552,127070761,127076625,127083588	127048633,127050522,127050912,127051243,127052362,127053445,127054012,127057601,127059155,127062197,127063646,127064018,127068255,127069031,127070090,127070647,127070816,127076706,127084550	0.840000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	48568987	48568988	48568987	+	High_confidence	6	8	8	0.264979	3.000000	chr2	48569019	48569241	SINE|MIR|MIRb	+	chr2	48569019	48679609	STON1-GTF2A1L|NM_172311.2	+	48569019,48580586,48591652,48620850,48621166,48642401,48645032,48646452,48669721,48671590,48679334	48569086,48582563,48591855,48620952,48621290,48642457,48645117,48647042,48669982,48671680,48679609	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	52569721	52569722	52569721	-	High_confidence	9	9	9	0.298101	2.947703	chr15	52569688	52569809	LINE|L2|L2	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	187513652	187513653	187513652	-	High_confidence	7	7	9	0.298101	2.947703	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	107069861	107069862	107069861	+	RAMPAGE_only	7	8	8	0.264979	3.000000	chr7	107069817	107070165	LINE|L1|L1ME4c	-	chr7	107044732	107161811	PRKAR2B|NM_002736.2	+	107044732,107070280,107121951,107128211,107140846,107146307,107150921,107153176,107156983,107157185,107159448	107045214,107070316,107122004,107128295,107140953,107146461,107151023,107153251,107157049,107157324,107161811	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	39217699	39217700	39217699	-	RAMPAGE_only	5	5	8	0.264979	2.521641	chr5	39217514	39217714	SINE|MIR|MIR	-	chr5	39107301	39219573	FYB1|ENST00000505428.5	-	39107301,39108230,39110355,39118873,39119534,39122335,39124252,39125997,39127740,39130589,39134207,39134854,39137599,39138656,39139232,39141094,39153447,39201825,39219442	39107465,39108262,39110389,39119036,39119634,39122402,39124278,39126135,39127807,39130612,39134349,39135014,39137720,39138691,39139252,39141141,39153604,39202987,39219573	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	119420439	119420470	119420440	+	High_confidence	44	63	171	5.663925	6.177455	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119420411	119475873	MSTRG.18851.1	+	119420411,119456314,119473907,119474400,119475677,119475823	119420813,119456368,119474015,119474460,119475727,119475873	0.789474
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	80485592	80485619	80485592	+	High_confidence	25	25	55	1.821730	5.281182	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.581818
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	183163620	183163621	183163620	-	High_confidence	4	6	7	0.231857	2.584963	chr3	183163266	183163587	SINE|Alu|AluSc5	-	chr3	183153900	183163839	LAMP3|ENST00000476015.1	-	183153900,183162606,183163619	183154391,183162730,183163839	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	128450737	128450748	128450742	+	RAMPAGE_only	7	8	22	0.728692	4.011365	chr7	128450695	128451001	SINE|Alu|AluSz	-	chr7	128455936	128469197	AC010655.2|ENST00000493710.1	+	128455936,128457200,128466562,128468844	128456023,128457299,128466685,128469197	0.681818
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	143281669	143281687	143281686	-	High_confidence	82	95	334	11.062872	5.486175	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.628743
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	123179220	123179221	123179220	-	RAMPAGE_only	13	14	15	0.496836	3.773557	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.733333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	229586905	229586910	229586905	-	RAMPAGE_only	6	6	12	0.397468	3.084963	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229357628	229714558	DNER|ENST00000341772.4	-	229357628,229366872,229388264,229407231,229418107,229447315,229477139,229512782,229546946,229585857,229588393,229591579,229714147	229358651,229367119,229388396,229407345,229418230,229447540,229477253,229512936,229547092,229586024,229588488,229591888,229714558	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	1765690	1765710	1765690	-	RAMPAGE_only	2	2	10	0.331224	2.725481	chr6	1765547	1765692	SINE|MIR|MIR1_Amn	-	chr6	1623806	1930999	GMDS|ENST00000380805.6	-	1623806,1624471,1717507,1726415,1742467,1930102	1624231,1624540,1717643,1726512,1742586,1930999	0.700000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	73841948	73841952	73841948	-	High_confidence	3	3	8	0.264979	2.807355	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	29434271	29434288	29434287	+	RAMPAGE_only	4	4	8	0.264979	2.500000	chr21	29434091	29434453	LTR|ERVL-MaLR|THE1B	+	chr21	29327275	29630751	BACH1|ENST00000468059.1	+	29327275,29329486,29597569,29630538	29327393,29329693,29597694,29630751	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	17282813	17282831	17282821	+	RAMPAGE_only	3	3	13	0.430591	3.700440	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17331523	MSTRG.3592.15	+	17277022,17282788,17295323,17296103,17301743,17309571,17310824,17311192,17311871,17312027,17315385,17330126,17330901,17331411	17277095,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17331523	0.923077
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	80544700	80544701	80544700	+	RAMPAGE_only	10	10	13	0.430591	3.251629	chr7	80544505	80544872	LTR|ERVL-MaLR|THE1B	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.846154
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	158734829	158734837	158734829	-	High_confidence	4	4	8	0.264979	2.750000	chr2	158734613	158734820	SINE|MIR|MIRb	-	chr2	158678655	158734818	PKP4-AS1|ENST00000442666.1	-	158678655,158734727	158679389,158734818	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	100663220	100663224	100663223	-	High_confidence	5	5	11	0.364346	3.277613	chr8	100662939	100663274	LINE|L1|L1PA17	+	chr8	100617643	100663219	SNX31|ENST00000520661.5	-	100617643,100630326,100635896,100657723,100663141	100617730,100630391,100636011,100657867,100663219	0.636364
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	41535348	41535367	41535348	+	High_confidence	2	2	8	0.264979	2.521641	chr19	41534903	41535457	LINE|L1|L1PB	+	chr19	41535182	41536900	LINC01480|ENST00000597199.1	+	41535182	41536900	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	143247349	143247353	143247352	+	RAMPAGE_only	6	6	10	0.331224	2.947703	chr2	143246994	143247508	LTR|ERVL|LTR32	+	chr2	143129329	143768352	ARHGAP15|NM_018460.3	+	143129329,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	7905967	7905976	7905970	-	High_confidence	4	4	12	0.397468	2.913977	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	86369000	86369007	86369006	+	RAMPAGE_only	4	5	9	0.298101	2.500000	chr8	86368776	86369052	LINE|L2|L2c	+	chr8	86374040	86467476	WWP1|ENST00000265428.4	+	86374040,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	72693353	72693354	72693353	-	RAMPAGE_only	14	15	18	0.596203	3.410417	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.944444
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	118419276	118419289	118419288	+	RAMPAGE_only	2	2	7	0.231857	2.584963	chrX	118415803	118419707	LINE|L1|L1PB1	-	chrX	118392747	118449336	WDR44|ENST00000371848.3	+	118392747,118394054,118395248,118396969,118398386,118404337,118406874,118409488,118410894,118432780,118436701,118441367,118442243,118442564,118443559,118444359,118447059,118448892	118393271,118394185,118395344,118397106,118398470,118404444,118407026,118409627,118410959,118432894,118436824,118441559,118442345,118442680,118443687,118444494,118447114,118449336	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	122064308	122064337	122064308	+	RAMPAGE_only	3	3	14	0.463713	3.664498	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	55671844	55671876	55671875	+	High_confidence	3	3	11	0.364346	3.459432	chr14	55671902	55672073	DNA|hAT-Charlie|MER5A	+	chr14	55671314	55684579	KTN1|ENST00000556631.1	+	55671314,55678351,55679564,55684098	55675918,55678444,55679685,55684579	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	65438567	65438750	65438567	+	RAMPAGE_only	14	15	268	8.876795	5.729744	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	27445105	27445116	27445105	-	RAMPAGE_only	2	2	9	0.298101	3.000000	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	107580245	107580267	107580245	+	High_confidence	1002	1013	4682	155.078938	7.391240	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.901538
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	101308295	101308300	101308295	+	High_confidence	4	4	12	0.397468	3.022055	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	48492530	48492556	48492555	-	RAMPAGE_only	2	2	7	0.231857	2.584963	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48488958	48533233	RCBTB2|ENST00000344532.7	-	48488958,48496190,48499620,48501741,48502723,48510628,48511769,48512015,48512728,48515204,48515585,48521897,48522307,48524658,48533027	48490251,48496321,48499760,48501868,48502914,48510771,48511877,48512174,48512895,48515355,48515741,48521962,48522403,48524757,48533233	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	12522797	12522814	12522813	+	RAMPAGE_only	4	4	12	0.397468	2.550341	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	21075853	21075856	21075853	+	High_confidence	9	9	15	0.496836	3.456565	chr17	21075733	21075870	LINE|L2|L2a	-	chr17	21075555	21090615	LINC01563|ENST00000456235.1	+	21075555,21090267	21075957,21090615	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	141332616	141332617	141332616	-	High_confidence	235	236	247	8.181225	5.302941	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.927126
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	7147287	7147288	7147287	+	High_confidence	15	15	20	0.662447	4.221928	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	95005096	95005097	95005096	+	RAMPAGE_only	4	4	7	0.231857	2.584963	chr7	95005086	95005142	LINE|L2|L2a	+	chr7	94910082	95290364	PPP1R9A|ENST00000289495.7	+	94910082,95111258,95120711,95161866,95198348,95225960,95247472,95250025,95251761,95251958,95268549,95269260,95273898,95274084,95284017,95286205,95288535,95290090	94911508,95111391,95120832,95161971,95198484,95226116,95247526,95250255,95251858,95252130,95268707,95269507,95273986,95274168,95284216,95286325,95288718,95290364	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	96892473	96892474	96892473	+	RAMPAGE_only	28	28	28	0.927426	4.521641	chr12	96892283	96892630	LTR|ERVL-MaLR|THE1A	+	chr12	96907222	96953777	NEDD1|ENST00000266742.8	+	96907222,96907603,96909751,96912722,96917620,96919984,96934975,96936610,96937197,96940408,96942576,96943559,96944638,96945692,96951431,96951948	96907300,96907856,96909895,96912817,96917737,96920125,96935205,96936812,96937393,96940537,96942624,96943762,96944795,96945849,96951498,96953777	0.678571
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	131316074	131316084	131316083	+	RAMPAGE_only	4	4	8	0.264979	2.521641	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131264099	131394667	CDC42SE2|ENST00000505065.1	+	131264099,131315975,131359208,131385542,131390992	131264166,131316144,131359547,131385644,131394667	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	7906253	7906287	7906253	-	High_confidence	17	19	49	1.622996	5.053509	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.693878
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	31577941	31577963	31577941	+	High_confidence	2	2	10	0.331224	3.169925	chr14	31577911	31578038	LINE|L2|L2c	+	chr14	31577915	31861224	NUBPL|NM_001201573.1	+	31577915,31599288,31673354,31673483,31787779,31826628,31846470,31850118,31859117	31578025,31599379,31673394,31673574,31787873,31826714,31846591,31850201,31861224	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	99274028	99274048	99274047	+	RAMPAGE_only	3	3	8	0.264979	2.807355	chr4	99273774	99274067	LTR|ERVL-MaLR|MLT1E1A	+	chr4	99267670	99275051	AP002026.1|ENST00000510764.1	+	99267670,99274124,99274961	99267836,99274255,99275051	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	22086341	22086384	22086345	+	High_confidence	4	4	26	0.861182	4.392747	chr14	22086381	22086487	LINE|CR1|L3b	+	chr14	22086406	22086961	TRAV23DV6|ENST00000390451.2	+	22086406,22086649	22086503,22086961	0.576923
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	75347014	75347066	75347065	+	High_confidence	7	7	36	1.192405	4.607018	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347068	75349024	NEIL1|ENST00000568881.1	+	75347068,75347958,75348883	75347473,75347999,75349024	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	20658312	20658349	20658338	+	High_confidence	29	30	119	3.941562	5.205993	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.747899
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	169708932	169708933	169708932	-	High_confidence	9	10	12	0.397468	3.251629	chr1	169708829	169709010	SINE|MIR|MIR3	-	chr1	169690664	169708856	SELL|NR_029467.1	-	169690664,169696534,169701559,169703254,169704567,169707341,169708416	169691802,169696553,169701688,169703440,169704753,169707449,169708856	0.916667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	238486008	238486043	238486034	-	High_confidence	11	24	76	2.517300	5.331317	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.763158
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	99893225	99893277	99893225	-	High_confidence	4	5	24	0.794937	4.136842	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	95437800	95437816	95437815	-	RAMPAGE_only	3	3	7	0.231857	2.584963	chr10	95437676	95437818	LINE|L2|L2c	+	chr10	95341583	95561373	SORBS1|ENST00000474353.6	-	95341583,95346405,95351215,95354881,95357630,95367649,95381684,95383984,95384237,95397219,95399016,95406117,95410632,95414493,95415468,95421960,95432447,95437489,95441125,95491034,95561319	95341678,95346452,95351376,95354967,95357803,95367699,95381799,95384114,95384285,95397283,95399189,95406147,95410777,95414862,95416185,95422073,95432576,95437555,95441180,95491120,95561373	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	22392829	22392884	22392883	+	High_confidence	14	14	31	1.026793	4.706891	chr8	22392932	22392982	LINE|L2|L2b	+	chr8	22392829	22404870	SLC39A14|ENST00000520832.1	+	22392829,22404695	22393232,22404870	0.774194
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	38468560	38468597	38468596	-	High_confidence	6	6	11	0.364346	2.921928	chr5	38468426	38468568	SINE|MIR|MIRc	-	chr5	38466162	38468339	AC010457.1|ENST00000510137.1	-	38466162,38468238	38466398,38468339	0.636364
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	92061938	92061939	92061938	-	RAMPAGE_only	8	9	12	0.397468	3.418296	chr12	92061775	92062118	LTR|ERVL-MaLR|THE1B	-	chr12	91993084	92028257	LINC01619|ENST00000551306.1	-	91993084,92028169	91993529,92028257	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	9987152	9987163	9987162	+	High_confidence	8	8	15	0.496836	2.521641	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9987214	10003097	EMC3-AS1|ENST00000440568.1	+	9987214,9987814,9988711,10002716	9987264,9987905,9988747,10003097	0.533333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	53445764	53445783	53445780	+	High_confidence	10	12	46	1.523629	4.291583	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.934783
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	23319798	23319839	23319831	-	RAMPAGE_only	4	4	13	0.430591	3.546594	chr1	23319118	23320193	LINE|L2|L2a	+	chr1	23304687	23344317	MSTRG.377.3	-	23304687,23318482,23333517,23337753,23338489,23340851,23344210	23313702,23323732,23333631,23337861,23338608,23341017,23344317	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	128492145	128492219	128492145	-	High_confidence	2	3	18	0.596203	3.219528	chr6	128492117	128492389	LINE|L2|L2c	+	chr6	128219069	128491857	PTPRK|ENST00000495748.5	-	128219069,128240034,128242520,128322038,128397565,128491731	128219096,128240150,128242602,128322310,128397688,128491857	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	80744332	80744354	80744332	-	RAMPAGE_only	3	3	13	0.430591	3.546594	chr7	80744204	80744304	SINE|MIR|MIR	-	chr7	80742537	80919351	SEMA3C|ENST00000265361.7	-	80742537,80748897,80751268,80758330,80761615,80765154,80789305,80798091,80800756,80802664,80804105,80805638,80810610,80818298,80827424,80828584,80916678,80918827	80745307,80749028,80751336,80758488,80761657,80765243,80789528,80798236,80800826,80802779,80804248,80805758,80810701,80818418,80827487,80828745,80916819,80919351	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	145503827	145503848	145503847	+	RAMPAGE_only	4	4	19	0.629325	3.321104	chr4	145503639	145504201	DNA|TcMar-Tigger|MER6A	+	chr4	145484512	145514703	SMAD1|ENST00000506626.1	+	145484512,145514437	145484764,145514703	0.684211
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	111392850	111392900	111392899	-	RAMPAGE_only	9	9	16	0.529958	3.773557	chr7	111392522	111393282	LTR|ERVL|MER21C	-	chr7	110663300	111390750	IMMP2L|ENST00000489381.1	-	110663300,110664823,110963499,111390570	110663721,110665012,110963565,111390750	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	65382645	65382673	65382645	-	High_confidence	11	12	35	1.159283	4.852169	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.971429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr18	2589120	2589121	2589120	+	RAMPAGE_only	7	7	11	0.364346	3.121928	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	0.909091
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	65244449	65244455	65244454	-	RAMPAGE_only	9	11	16	0.529958	3.106891	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.937500
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	2881285	2881286	2881285	-	High_confidence	10	10	10	0.331224	3.121928	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	39026129	39026183	39026139	+	High_confidence	4	6	32	1.059916	4.321627	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.968750
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	99361501	99361502	99361501	-	RAMPAGE_only	8	8	12	0.397468	2.594907	chr4	99361269	99361501	SINE|MIR|MIR	-	chr4	99336491	99353045	ADH1C|NM_000669.4	-	99336491,99339576,99340574,99342794,99344861,99345178,99347005,99347744,99352657	99336776,99339715,99340710,99343055,99345081,99345266,99347144,99347846,99353045	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	45034830	45034841	45034840	+	RAMPAGE_only	4	5	11	0.364346	3.121928	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	0.909091
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	127084154	127084155	127084154	-	High_confidence	9	9	13	0.430591	3.238901	chr2	127084080	127084233	DNA|hAT-Charlie|MER5A1	+	chr2	127048022	127084550	BIN1|NM_001320642.1	-	127048022,127050420,127050801,127051153,127052254,127053421,127053904,127057472,127059010,127062114,127063570,127063932,127068162,127068923,127069994,127070552,127070761,127076625,127083588	127048633,127050522,127050912,127051243,127052362,127053445,127054012,127057601,127059155,127062197,127063646,127064018,127068255,127069031,127070090,127070647,127070816,127076706,127084550	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	66408530	66408539	66408530	+	High_confidence	8	8	16	0.529958	3.640224	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.812500
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	125497354	125497365	125497354	-	RAMPAGE_only	1	1	7	0.231857	2.584963	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	134527596	134527597	134527596	+	High_confidence	7	7	8	0.264979	2.807355	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	234994850	234994864	234994850	+	RAMPAGE_only	8	10	30	0.993671	4.256565	chr2	234994764	234995166	LTR|ERVL|LTR16A	-	chr2	234981623	235041288	SH3BP4|ENST00000446904.5	+	234981623,234995302,235034870,235040887	234981727,234995376,235035120,235041288	0.533333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	91883349	91883350	91883349	-	RAMPAGE_only	7	11	11	0.364346	2.913977	chr14	91883123	91883337	LINE|CR1|L3	-	chr14	91870042	91947074	FBLN5|ENST00000556154.5	-	91870042,91877486,91881291,91882953,91887192,91891220,91894949,91936946,91940564,91942906,91946710	91870385,91877682,91881418,91883076,91887312,91891337,91895072,91937201,91940616,91942961,91947074	0.909091
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	45192659	45192666	45192665	-	RAMPAGE_only	17	18	30	0.993671	4.582119	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	54616933	54616934	54616933	+	High_confidence	7	7	9	0.298101	2.947703	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54616929	54637556	LILRB1|NM_006669.6	+	54616929,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637556	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	36850360	36850396	36850371	+	High_confidence	4	4	24	0.794937	4.251629	chr19	36850362	36850429	LTR|ERV1|MER67D	-	chr19	36850360	36879572	ZNF345|ENST00000589046.1	+	36850360,36851727,36876784	36850515,36851904,36879572	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	4736361	4736404	4736366	-	High_confidence	6	7	28	0.927426	4.035582	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.785714
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	202551736	202551798	202551736	+	RAMPAGE_only	32	33	157	5.200212	6.301408	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.528662
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	67980769	67980770	67980769	+	RAMPAGE_only	16	19	19	0.629325	3.405822	chr8	67980581	67980945	LTR|ERVL-MaLR|THE1C	+	chr8	67952367	68106007	PREX2|ENST00000529398.5	+	67952367,68017845,68019548,68022035,68027221,68030496,68038158,68044486,68053096,68055829,68060678,68069032,68069834,68072494,68077396,68080442,68080745,68083239,68087723,68090578,68093604,68097016,68099681,68105137	67952535,68017917,68019671,68022140,68027323,68030658,68038292,68044590,68053246,68055974,68060779,68069136,68069884,68072570,68077469,68080585,68080838,68083388,68087809,68090715,68093722,68097201,68099843,68106007	0.526316
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	62056704	62056715	62056704	+	RAMPAGE_only	3	3	11	0.364346	2.663533	chr10	62056749	62056941	DNA|hAT-Charlie|MER58A	+	chr10	61901629	62096944	MSTRG.2711.3	+	61901629,61902158,61940182,62000090,62050887,62090861	61901730,61902413,61940408,62049483,62085900,62096944	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	44977228	44977271	44977251	-	RAMPAGE_only	3	3	23	0.761815	3.916127	chr10	44977078	44977207	SINE|MIR|MIR	-	chr10	44976128	44978810	DEPP1|ENST00000298295.3	-	44976128,44978617	44978055,44978810	0.913043
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	134613015	134613044	134613031	-	RAMPAGE_only	25	26	62	2.053587	4.354249	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606429	134614903	SAR1B|ENST00000508363.5	-	134606429,134608371,134609570,134612690	134607066,134608503,134609674,134614903	0.967742
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	95516119	95516123	95516119	+	High_confidence	14	23	47	1.556751	4.836080	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.957447
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	128921386	128921411	128921399	+	High_confidence	3	3	12	0.397468	3.459432	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.916667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	38318984	38318985	38318984	-	High_confidence	7	8	11	0.364346	2.721928	chr7	38318855	38319140	LINE|L2|L2c	+	chr7	38317016	38318861	TRGV9|ENST00000444775.2	-	38317016,38317446	38317336,38318861	0.636364
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	32477554	32477583	32477582	+	RAMPAGE_only	2	2	7	0.231857	2.521641	chr2	32477616	32477749	SINE|Alu|AluJb	+	chr2	32357324	32524908	BIRC6|ENST00000648282.1	+	32357324,32377587,32380152,32388749,32392038,32395510,32401162,32401462,32406498,32414768,32429145,32430864,32433643,32436052,32439507,32441328,32442064,32442323,32443490,32445520,32448794,32453807,32463193,32464508,32465064,32467524,32467902,32468436,32469394,32470167,32471013,32473111,32476212,32477367,32478634,32479461,32481319,32482428,32485642,32487646,32488587,32490040,32491424,32493539,32499546,32501712,32502794,32503041,32505004,32507979,32509737,32510525,32512932,32514989,32518253,32518816,32521661,32524887	32357486,32377769,32380290,32388943,32392150,32395593,32401385,32401623,32406557,32416163,32429295,32431090,32433804,32436184,32439686,32441462,32442226,32442455,32443588,32445668,32448928,32453954,32463381,32464823,32465164,32467739,32468111,32468783,32469614,32470301,32471151,32473239,32476344,32477583,32478818,32479617,32481453,32482582,32485759,32487801,32488714,32490151,32491558,32493667,32500109,32501888,32502891,32503236,32505205,32508259,32509994,32510634,32513154,32515770,32518397,32518946,32521757,32524908	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	44953990	44954037	44954009	+	RAMPAGE_only	18	18	102	3.378482	5.710205	chr21	44953871	44954037	LINE|L1|L1M5	-	chr21	44958245	44976973	FAM207A|ENST00000479127.5	+	44958245,44960099,44967033,44973196,44976679	44958424,44960168,44967181,44973265,44976973	0.803922
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	89272838	89272887	89272882	-	High_confidence	35	35	320	10.599159	6.182786	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.940625
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	182390098	182390123	182390098	-	High_confidence	7	7	20	0.662447	3.921928	chr1	182389985	182390241	SINE|Alu|AluSx	+	chr1	182382893	182390304	GLUL|ENST00000491322.1	-	182382893,182388571	182387292,182390304	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	40453546	40453547	40453546	-	High_confidence	6	6	7	0.231857	2.584963	chr2	40453521	40453703	DNA|hAT-Charlie|MER5B	+	chr2	40430019	40453438	SLC8A1|ENST00000455476.5	-	40430019,40453160	40430304,40453438	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	179699766	179699767	179699766	+	High_confidence	6	6	6	0.198734	2.584963	chr5	179699708	179699835	SINE|MIR|MIR3	-	chr5	179699025	179709949	CANX|ENST00000510810.5	+	179699025,179706257,179707131,179708238,179708977,179709872	179699102,179706331,179707190,179708380,179709059,179709949	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	57404834	57404835	57404834	+	High_confidence	16	18	18	0.596203	3.038562	chr16	57404660	57404877	SINE|MIR|MIR	-	chr16	57404766	57416062	CCL17|NM_002987.2	+	57404766,57413873,57415080,57415764	57404836,57414002,57415198,57416062	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	125214247	125214248	125214247	+	RAMPAGE_only	4	4	6	0.198734	2.584963	chr6	125213832	125214305	LTR|ERVL|LTR33	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	150125450	150125474	150125450	-	RAMPAGE_only	2	2	9	0.298101	3.000000	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	235865237	235865255	235865237	-	RAMPAGE_only	4	4	13	0.430591	3.251629	chr1	235864944	235865509	LINE|L2|L2a	+	chr1	235661040	235866920	LYST|ENST00000389793.6	-	235661040,235663983,235664464,235677090,235677479,235686948,235693349,235697082,235702746,235709090,235712056,235715200,235716711,235720660,235724027,235728075,235729595,235730846,235731031,235733502,235733829,235734482,235741421,235743978,235746335,235751209,235752004,235753043,235755477,235757280,235758971,235762719,235766078,235770159,235773841,235774912,235777062,235780864,235781926,235787199,235788700,235791698,235793502,235800319,235800870,235802907,235804503,235805742,235808454,235812970,235830225,235833577,235866842	235663078,235664055,235664621,235677188,235677619,235687047,235693486,235697272,235702977,235709308,235712197,235715357,235716778,235720905,235724180,235728131,235729657,235730943,235731177,235733691,235733906,235734659,235741628,235744157,235746527,235751362,235752171,235753274,235755647,235757458,235759599,235762851,235766277,235770297,235773991,235775086,235777308,235781055,235782087,235787373,235788845,235792125,235793612,235800386,235801097,235803064,235804665,235806772,235810534,235813061,235830424,235833667,235866920	0.923077
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	116661543	116661544	116661543	+	High_confidence	14	14	14	0.463713	3.664498	chr12	116660542	116661920	LTR|ERV1|LTR12C	+	chr12	116661581	116698065	AC125603.2|ENST00000546835.1	+	116661581,116697854	116662246,116698065	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	101731413	101731433	101731413	+	High_confidence	12	12	22	0.728692	3.984184	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.681818
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	67387467	67387492	67387467	-	RAMPAGE_only	3	3	8	0.264979	2.750000	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	143707962	143707973	143707968	+	RAMPAGE_only	13	14	37	1.225528	4.007537	chr6	143707720	143708120	LTR|ERVL-MaLR|MSTA	-	chr6	143678067	143755499	PHACTR2|ENST00000397980.3	+	143678067,143712015,143748984,143753753,143755304	143678209,143712183,143749065,143753912,143755499	0.810811
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	39265954	39265971	39265954	+	High_confidence	4	4	19	0.629325	3.836592	chr14	39265902	39265967	LINE|RTE-BovB|MamRTE1	+	chr14	39265967	39350423	MIA2|ENST00000396165.8	+	39265967,39276933,39279336,39279448,39291018,39293270,39293999,39294924,39299863,39302128,39303477,39304290,39308448,39313339,39314738,39315682,39317943,39319208,39320927,39326863,39345903,39347712,39348742,39350097	39266527,39277065,39279358,39279537,39291096,39293381,39294071,39295029,39299986,39302249,39303524,39304381,39308587,39313441,39314799,39315718,39318011,39319291,39321056,39327022,39346026,39347771,39348977,39350423	0.947368
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	17012378	17012388	17012378	-	RAMPAGE_only	2	2	6	0.198734	2.584963	chr11	17011267	17012726	LINE|L2|L2a	+	chr11	16787483	17014412	PLEKHA7|ENST00000355661.7	-	16787483,16789774,16790797,16791010,16794487,16794909,16800973,16801667,16802971,16803226,16813112,16816177,16816799,16826119,16841546,16851190,16852282,16854888,16855802,16871098,17013988,17014124,17014315	16789296,16789878,16790915,16791199,16794714,16795018,16801075,16801817,16803052,16803295,16813166,16816264,16817322,16826590,16841722,16851291,16852355,16854993,16855914,16871182,17014046,17014201,17014412	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	65434368	65434800	65434799	+	RAMPAGE_only	25	26	428	14.176375	6.782475	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.997664
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	32537176	32537177	32537176	-	High_confidence	11	11	16	0.529958	3.405639	chr20	32537119	32537267	SINE|MIR|MIRb	-	chr20	32464779	32536397	NOL4L|ENST00000375678.7	-	32464779,32474600,32511346,32520810,32527757,32532316,32533375,32535440	32465134,32474742,32511456,32520922,32527913,32532416,32533485,32536397	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	70238380	70238387	70238380	+	RAMPAGE_only	290	297	720	23.848107	6.074119	chr4	70238055	70239428	LINE|L2|L2a	-	chr4	70242587	70251428	CSN3|ENST00000304954.3	+	70242587,70244811,70247817,70248997,70251261	70242665,70244873,70247850,70249493,70251428	0.981944
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	74260291	74260300	74260291	-	RAMPAGE_only	8	8	17	0.563080	3.101881	chrX	74259927	74260438	LTR|ERV1|LTR9B	+	chrX	74209975	74292529	MSTRG.23896.12	-	74209975,74218620,74280930,74281701,74292426	74218577,74280494,74281085,74281848,74292529	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	15740061	15740078	15740077	-	RAMPAGE_only	3	3	7	0.231857	2.807355	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	11321325	11321326	11321325	-	High_confidence	19	20	21	0.695570	3.576618	chr19	11321200	11321519	LTR|ERVL-MaLR|THE1D	-	chr19	11300866	11321323	AC011472.2|ENST00000585801.1	-	11300866,11306678,11321293	11301236,11306824,11321323	0.809524
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	102083051	102083235	102083165	-	RAMPAGE_only	8	8	106	3.510971	5.977254	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.990566
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	45833251	45833252	45833251	-	High_confidence	47	47	47	1.556751	4.485128	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	84139251	84139290	84139289	-	RAMPAGE_only	3	3	9	0.298101	2.750000	chr16	84139153	84139637	LTR|ERVL-MaLR|MLT1D	+	chr16	84122280	84145188	HSDL1|ENST00000219439.8	-	84122280,84129547,84129985,84131101,84135543,84145079	84124728,84129775,84130431,84131327,84135605,84145188	0.555556
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	231799584	231799593	231799592	+	RAMPAGE_only	9	10	31	1.026793	4.453881	chr1	231799399	231799683	LINE|L2|L2a	-	chr1	231626836	232009654	DISC1|ENST00000422590.6	+	231626836,231693829,231701954,231749925,231767139,231770834,231795241,231800107,231818328,231958827,232008784	231626934,231694805,231702024,231750076,231767269,231771070,231795296,231800210,231818517,231958888,232009654	0.709677
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	39942093	39942121	39942093	+	High_confidence	2	2	10	0.331224	3.321928	chr6	39941788	39942313	LTR|ERVL-MaLR|MLT1F1	+	chr6	39941980	39958958	MSTRG.19900.2	+	39941980,39947505,39948429,39953047	39942244,39947565,39948503,39958958	0.700000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	70676492	70676546	70676492	-	RAMPAGE_only	3	3	24	0.794937	4.152391	chr15	70676255	70676461	SINE|MIR|MIRb	-	chr15	70669093	70671973	UACA|ENST00000559290.1	-	70669093,70671038	70669462,70671973	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	196715644	196715731	196715651	+	RAMPAGE_only	6	6	53	1.755486	4.886370	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.924528
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	30097080	30097081	30097080	+	High_confidence	6	6	6	0.198734	2.584963	chr16	30096875	30097207	LTR|ERV1|LTR10B2	+	chr16	30096429	30104116	AC012645.1|ENST00000515455.2	+	30096429,30103456	30097419,30104116	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	35713210	35713233	35713224	-	High_confidence	4	4	13	0.430591	3.251629	chr20	35713201	35713317	SINE|Alu|AluJb	+	chr20	35704325	35713203	RBM39|ENST00000495293.5	-	35704325,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709274,35713203	0.538462
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	170267244	170267290	170267259	-	High_confidence	3	3	11	0.364346	3.321928	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.818182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	41430585	41430586	41430585	+	RAMPAGE_only	8	8	8	0.264979	2.750000	chr21	41429929	41430715	DNA|hAT-Charlie|Charlie2b	+	chr21	41431713	41459214	MX1|ENST00000288383.10	+	41431713,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41432175,41435960,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	110046331	110046457	110046354	+	RAMPAGE_only	6	6	62	2.053587	5.337024	chrX	110046353	110046415	DNA|TcMar-Tigger|Tigger19b	-	chrX	110003114	110177788	TMEM164|ENST00000288381.4	+	110003114,110003500,110144797,110171419,110173244	110003178,110004164,110144876,110171520,110177788	0.725806
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	14075234	14075267	14075234	+	RAMPAGE_only	3	4	14	0.463713	3.807355	chr11	14075105	14075323	SINE|MIR|MIRb	-	chr11	13962688	14267884	SPON1|ENST00000576479.3	+	13962688,13982846,14041520,14075344,14079898,14135419,14243331,14254527,14255646,14256616,14257715,14259279,14259533,14260587,14262711,14265523	13963142,13982953,14041654,14075418,14080021,14135568,14243396,14254729,14255787,14256692,14257898,14259450,14259701,14260752,14262975,14267884	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	96797182	96797193	96797192	-	RAMPAGE_only	3	3	7	0.231857	2.521641	chr5	96797097	96797154	DNA|hAT-Blackjack|MER81	-	chr5	96790584	96793671	ERAP1|ENST00000503311.1	-	96790584,96792060,96793399	96790643,96792192,96793671	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	15475732	15475733	15475732	-	RAMPAGE_only	6	6	7	0.231857	2.584963	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15436014	15467611	CDRT4|ENST00000619038.4	-	15436014,15440207,15453003,15467459	15438200,15440285,15453085,15467611	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	206161379	206161466	206161454	+	High_confidence	11	11	100	3.312237	5.509624	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	0.980000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	44722856	44722888	44722882	-	RAMPAGE_only	4	4	14	0.463713	3.546594	chr19	44722780	44723070	LINE|L2|L2b	-	chr19	44632198	44718631	AC243964.2|ENST00000590796.1	-	44632198,44699083,44715949,44718449	44632619,44699177,44716081,44718631	0.642857
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	38881001	38881017	38881001	-	RAMPAGE_only	13	13	21	0.695570	4.121928	chr14	38880649	38881113	LTR|ERVL-MaLR|MLT1F2	-	chr14	38749338	38916882	LINC00639|NR_039982.1	-	38749338,38835230,38835541,38890740,38916781	38749654,38835398,38839204,38890798,38916882	0.904762
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	18706991	18707000	18706991	-	RAMPAGE_only	4	4	10	0.331224	2.921928	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18704304	18726180	IGSF22|ENST00000513874.5	-	18704304,18705816,18706913,18707803,18708206,18709386,18710326,18710654,18712081,18713851,18714276,18714499,18715431,18716727,18717930,18718614,18719715,18720063,18720185,18721534,18721909,18724127,18726073	18704538,18706146,18707213,18707996,18708295,18709683,18710455,18710828,18712384,18714148,18714418,18714624,18715716,18717000,18718093,18718728,18719893,18720103,18720285,18721671,18722041,18724269,18726180	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	151687233	151687251	151687244	-	High_confidence	70	71	324	10.731648	5.802605	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151662487	151687265	MSTRG.19178.2	-	151662487,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687265	0.941358
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	128622497	128622527	128622497	+	RAMPAGE_only	2	2	10	0.331224	2.947703	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	102235451	102235473	102235451	-	High_confidence	5	5	15	0.496836	3.521641	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	40381283	40381293	40381283	+	RAMPAGE_only	3	3	9	0.298101	2.947703	chr1	40381190	40381531	LINE|L2|L2c	-	chr1	40373696	40415369	MSTRG.653.4	+	40373696,40399592,40408652,40409756,40413015,40414158,40415271	40399258,40406869,40408738,40409835,40413102,40414240,40415369	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	134432378	134432436	134432378	-	High_confidence	4	5	22	0.728692	3.936260	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.772727
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	196176330	196176332	196176331	-	High_confidence	26	41	49	1.622996	5.194236	chr2	196176299	196176378	LINE|RTE-BovB|MamRTE1	-	chr2	196133565	196176327	MSTRG.14010.1	-	196133565,196139619,196141248,196143559,196145910,196154967,196163261,196174248,196176225	196137729,196139799,196141297,196143686,196146055,196156651,196163427,196174407,196176327	0.795918
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	143824510	143824547	143824540	-	RAMPAGE_only	4	4	16	0.529958	3.906891	chr3	143824344	143824714	LINE|L2|L2a	+	chr3	143265221	143848531	SLC9A9|ENST00000316549.10	-	143265221,143268874,143363483,143382059,143467036,143493652,143495334,143552361,143574087,143578584,143652254,143693191,143795000,143796825,143832018,143848147	143266929,143268980,143363563,143382114,143467190,143493764,143495448,143552450,143574193,143578723,143652360,143693307,143795077,143796903,143832221,143848531	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	60183258	60183260	60183258	-	High_confidence	4	6	9	0.298101	2.947703	chr11	60183230	60183437	SINE|MIR|MIRb	+	chr11	60172496	60183223	MS4A6A|ENST00000412309.6	-	60172496,60175401,60178259,60179830,60181580,60183135	60173129,60175611,60178316,60179965,60181741,60183223	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	4355592	4355593	4355592	-	High_confidence	339	341	341	11.294728	5.374341	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.906158
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	65570512	65570536	65570521	+	High_confidence	27	40	112	3.709705	6.034642	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.598214
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	8244521	8244555	8244554	-	High_confidence	4	4	14	0.463713	3.334679	chr8	8244455	8244522	LTR|ERV1|MER57A-int	-	chr8	8240223	8244493	ALG1L13P|ENST00000522393.1	-	8240223,8240428,8241321,8242786,8243992,8244459	8240351,8240549,8241400,8242926,8244040,8244493	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	8867777	8867818	8867817	-	High_confidence	2	2	7	0.231857	2.807355	chr16	8867793	8868007	LINE|L2|L2a	-	chr16	8855230	8867887	CARHSP1|ENST00000567908.5	-	8855230,8858349,8859170,8867706	8855326,8858472,8859335,8867887	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	74000237	74000241	74000240	+	RAMPAGE_only	3	4	8	0.264979	2.500000	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	5768356	5768381	5768380	-	RAMPAGE_only	3	3	10	0.331224	3.121928	chr10	5768371	5769005	LINE|L1|L1MB3	+	chr10	5765228	5769389	GDI2|ENST00000479928.1	-	5765228,5766240,5768212	5766152,5766638,5769389	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	121756596	121756633	121756632	+	High_confidence	3	3	10	0.331224	3.121928	chr2	121756622	121756935	SINE|Alu|AluSx	+	chr2	121756170	121765661	TSN|ENST00000409193.1	+	121756170,121757239,121758709,121761408,121763004,121765133	121756691,121757333,121758806,121761524,121763084,121765661	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	38376015	38376033	38376032	+	RAMPAGE_only	6	7	17	0.563080	3.852169	chr19	38375972	38376110	SINE|MIR|MIR	-	chr19	38375008	38382753	PSMD8|ENST00000592035.5	+	38375008,38376159,38376351,38379239,38380898,38382116	38375509,38376232,38376454,38379405,38380999,38382753	0.823529
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	4642169	4642184	4642173	+	RAMPAGE_only	12	12	43	1.424262	4.768947	chr16	4642124	4642285	SINE|Alu|AluSz	-	chr16	4650386	4680067	MGRN1|ENST00000590790.5	+	4650386,4651962,4652677,4657245,4664708,4665098,4668264,4671390,4673497,4677462,4680031	4650483,4652051,4652824,4657363,4664775,4665151,4668312,4671459,4673657,4677572,4680067	0.651163
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	116605987	116605988	116605987	-	RAMPAGE_only	6	6	9	0.298101	2.947703	chr9	116605863	116606013	SINE|MIR|MIR3	+	chr9	116425224	116687215	ASTN2|NM_198186.3	-	116425224,116440608,116442452,116487358,116618323,116620309,116651527,116686696	116426088,116440792,116442553,116487500,116618472,116620443,116651793,116687215	0.555556
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	50342583	50342605	50342604	-	High_confidence	3	3	7	0.231857	2.807355	chr14	50342457	50342639	DNA|hAT|MER53	+	chr14	50341037	50342609	CDKL1|ENST00000529347.1	-	50341037,50342131	50341232,50342609	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	88635643	88635661	88635654	+	High_confidence	146	149	381	12.619623	6.778619	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303234.1	+	88635636,88636166,88639342,88652109,88655414	88635700,88636292,88639594,88652310,88656344	0.745407
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	71691513	71691523	71691522	-	High_confidence	5	5	11	0.364346	2.721928	chr15	71691454	71691674	SINE|MIR|MIRb	+	chr15	71688700	71691539	THSD4-AS2|NR_120346.1	-	71688700,71690659,71691365	71690554,71690770,71691539	0.545455
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	75481403	75481424	75481403	+	High_confidence	4	4	12	0.397468	3.418296	chr12	75481422	75481626	SINE|MIR|MIRb	+	chr12	75481203	75495662	GLIPR1|ENST00000550491.1	+	75481203,75481833,75490405,75495576	75481425,75482079,75490518,75495662	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	102401286	102401404	102401403	-	RAMPAGE_only	11	20	48	1.589874	4.941744	chr12	102401159	102401389	SINE|MIR|MIRb	-	chr12	102395866	102478651	IGF1|NM_001111284.1	-	102395866,102419508,102475642,102478486	102402566,102419690,102475799,102478651	0.937500
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	77475879	77475948	77475879	+	RAMPAGE_only	17	17	64	2.119832	5.329117	chr13	77474476	77476020	LTR|ERV1|LTR12C	-	chr13	77535673	77645263	SCEL|NM_144777.2	+	77535673,77555856,77556595,77559803,77563830,77567679,77568294,77569370,77572123,77589143,77591394,77593513,77597544,77599328,77599688,77602064,77602653,77603075,77604355,77608055,77609057,77610046,77612890,77613892,77617598,77617802,77618003,77627946,77634378,77637119,77640675,77642705,77644257	77535824,77555918,77556713,77559863,77563899,77567748,77568333,77569451,77572189,77589224,77591460,77593573,77597589,77599388,77599748,77602124,77602713,77603135,77604415,77608115,77609117,77610106,77612941,77613955,77617658,77617862,77618060,77628009,77634450,77637194,77640784,77642808,77645263	0.890625
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	169581157	169581192	169581157	-	RAMPAGE_only	4	4	17	0.563080	3.690117	chr4	169581068	169581193	SINE|Alu|AluJr4	+	chr4	169554042	169599143	NEK1|ENST00000509912.5	-	169554042,169555931,169561479,169561686,169561831,169562136,169576927,169580841,169585348,169587558,169588648,169589446,169590725,169599099	169555851,169556095,169561554,169561737,169561891,169562196,169577079,169580902,169585549,169587613,169588735,169589514,169590809,169599143	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	158631135	158631158	158631135	+	RAMPAGE_only	6	7	25	0.828059	4.418296	chr6	158631108	158631267	SINE|MIR|MIRc	-	chr6	158560049	158635428	MSTRG.20545.4	+	158560049,158573419,158580939,158583953,158585303,158589671,158605266,158607243,158608332,158608658,158623549,158625103,158625702,158628407,158629729,158631322,158631809	158561373,158573523,158580995,158584044,158585425,158589782,158605347,158607343,158608463,158608750,158623607,158625206,158625754,158628490,158629819,158631389,158635428	0.920000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	93773408	93773412	93773411	+	RAMPAGE_only	15	18	31	1.026793	4.481728	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.741935
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	5680196	5680261	5680240	-	High_confidence	15	15	106	3.510971	5.623523	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.896226
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	154038408	154038409	154038408	-	High_confidence	33	33	44	1.457384	4.930484	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	153991702	154038866	FAM114A2|ENST00000522858.5	-	153991702,153994918,153997802,154002250,154002846,154011240,154026398,154027175,154028148,154029488,154033790,154034277,154034743,154038292	153993110,153994972,153997875,154002390,154002969,154011320,154026522,154027334,154028283,154029580,154033883,154034377,154034967,154038866	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	32446970	32446988	32446977	+	High_confidence	22	25	61	2.020465	5.236237	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.967213
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	105500635	105500652	105500651	+	High_confidence	3	3	7	0.231857	2.584963	chr9	105500002	105500744	LINE|L1|L1MCa	-	chr9	105500658	105552433	FSD1L|ENST00000374707.1	+	105500658,105506398,105508616,105512806,105534492,105535066,105539262,105546357	105500763,105506608,105508715,105512936,105534593,105535318,105539351,105552433	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	9554953	9554971	9554953	-	High_confidence	3	3	8	0.264979	3.000000	chr2	9554869	9555063	DNA|hAT-Tip100?|MamRep1879	-	chr2	9488636	9554729	ADAM17|ENST00000648548.1	-	9488636,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152,9551474,9554708	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526264,9527954,9535922,9536828,9543285,9551757,9554729	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	171268995	171268996	171268995	+	RAMPAGE_only	30	31	37	1.225528	4.197160	chr1	171268815	171269160	LTR|ERVL-MaLR|THE1B	+	chr1	171275345	171283196	FMO1|ENST00000472893.1	+	171275345,171278728,171280785,171281977,171283143	171275508,171278871,171280985,171282065,171283196	0.864865
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	39530197	39530198	39530197	-	RAMPAGE_only	40	40	52	1.722363	4.924199	chr22	39530129	39530441	LINE|L2|L2a	-	chr22	39529096	39532093	RPS19BP1|ENST00000488602.1	-	39529096,39529819	39529623,39532093	0.942308
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	6590246	6590263	6590246	+	High_confidence	4	4	10	0.331224	3.169925	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	10363706	10363707	10363706	+	High_confidence	22	23	25	0.828059	3.969002	chr12	10363332	10363811	LTR|ERV1|LTR15	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.680000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	57516609	57516615	57516614	+	RAMPAGE_only	3	3	8	0.264979	2.521641	chr15	57516656	57516717	SINE|MIR|MIR	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	131108707	131108708	131108707	-	RAMPAGE_only	39	39	41	1.358017	4.977710	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944159	131109916	LINC-PINT|NR_109854.1	-	130944159,130945719,130984052,131052424,131107719,131109736	130944889,130945791,130984109,131052555,131108803,131109916	0.951220
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	24580593	24580613	24580612	+	High_confidence	7	7	13	0.430591	3.700440	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.846154
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	34512209	34512219	34512209	-	High_confidence	3	3	12	0.397468	3.251629	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	15923313	15923314	15923313	-	High_confidence	11	12	13	0.430591	3.022055	chr20	15923155	15923507	LTR|ERVL-MaLR|THE1A	-	chr20	15892332	15923314	LOC613266|NR_130925.1	-	15892332,15923231	15894277,15923314	0.615385
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	47780107	47780108	47780107	+	High_confidence	24	27	28	0.927426	3.950064	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	193656716	193656757	193656716	+	RAMPAGE_only	37	41	73	2.417933	5.438022	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193638018	193697800	OPA1|ENST00000646544.1	+	193638018,193642764,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193638065,193642845,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193697800	0.931507
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	9109558	9109624	9109623	-	RAMPAGE_only	6	6	25	0.828059	4.220176	chr3	9109543	9109955	LINE|L2|L2c	-	chr3	9006978	9124977	SRGAP3|ENST00000618999.4	-	9006978,9010307,9013307,9013736,9014741,9015596,9025260,9026934,9028099,9032649,9038062,9047390,9049260,9053026,9056232,9058250,9060230,9064395,9080024,9104679,9124724	9008347,9010387,9013535,9013842,9014841,9015731,9025338,9026995,9028130,9032752,9038090,9047475,9049469,9053224,9056334,9058472,9060359,9064581,9080087,9104842,9124977	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	154928492	154928506	154928503	+	High_confidence	20	20	37	1.225528	4.571861	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.864865
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	138369945	138369956	138369945	+	RAMPAGE_only	2	3	6	0.198734	2.584963	chr5	138369795	138370010	SINE|MIR|MIRc	-	chr5	138372673	138437028	KDM3B|ENST00000510866.5	+	138372673,138375092,138377719,138379583,138381515,138386021,138386288,138391012,138393170,138398177,138399859,138415131,138417482,138418952,138420705,138424074,138425410,138426974,138427188,138427966,138429825,138430248,138431424,138435619	138372841,138375206,138377825,138379708,138381590,138386190,138386621,138392261,138393372,138398392,138400012,138415239,138417610,138419232,138420962,138424341,138425582,138427065,138427319,138428086,138429965,138430425,138431559,138437028	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	20674741	20674763	20674762	+	High_confidence	5	5	9	0.298101	3.000000	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.555556
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	30568912	30568913	30568912	-	RAMPAGE_only	4	4	7	0.231857	2.807355	chr7	30568321	30569340	LTR|ERV1|MER4-int	+	chr7	30558095	30573088	GARS-DT|ENST00000584621.5	-	30558095,30561465,30563730,30568832,30572999	30559355,30562128,30563998,30568989,30573088	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	212792405	212792426	212792425	-	High_confidence	2	3	6	0.198734	2.584963	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	39021127	39021156	39021155	+	High_confidence	53	53	197	6.525107	5.695291	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.994924
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	42415354	42415381	42415354	-	RAMPAGE_only	2	2	9	0.298101	2.750000	chr15	42415122	42415421	SINE|Alu|AluSq2	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	39810023	39810084	39810033	-	High_confidence	45	46	212	7.021943	5.651932	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.853774
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	100834651	100834662	100834661	+	High_confidence	6	6	10	0.331224	2.921928	chr14	100834648	100834738	LINE|L2|L2b	+	chr14	100833763	100861021	MEG3|ENST00000524035.5	+	100833763,100836166,100845457,100860690	100836075,100836300,100845533,100861021	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	200857733	200857778	200857733	-	High_confidence	2	2	22	0.728692	4.084184	chr2	200857615	200857696	LINE|L1|L1MA8	-	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	0.909091
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	31376356	31376357	31376356	-	High_confidence	48	50	50	1.656119	4.334963	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.780000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	13386132	13386133	13386132	+	RAMPAGE_only	103	106	142	4.703377	5.307908	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.852113
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	180909572	180909573	180909572	+	High_confidence	25	26	36	1.192405	5.014997	chr5	180909597	180909731	SINE|Alu|FLAM_C	+	chr5	180909572	180948353	BTNL8|ENST00000514448.5	+	180909572,180911338,180947511	180909697,180911614,180948353	0.555556
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	54617130	54617152	54617147	+	High_confidence	13	13	54	1.788608	5.120357	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.759259
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	27612576	27612587	27612576	+	High_confidence	6	6	11	0.364346	3.277613	chr14	27612284	27612881	LTR|ERVL|LTR66	+	chr14	27612587	27639636	LINC00645|ENST00000557359.5	+	27612587,27613420,27634243,27636419	27612677,27613496,27634344,27639636	0.727273
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	65440281	65440782	65440781	+	RAMPAGE_only	36	36	468	15.501269	6.725957	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	36594495	36594539	36594538	-	High_confidence	4	4	14	0.463713	3.521641	chr2	36594337	36594691	LTR|ERVL-MaLR|THE1A	-	chr2	36552257	36594566	FEZ2|ENST00000413938.5	-	36552257,36555682,36558437,36578596,36581289,36581504,36583352,36590902,36594413	36553179,36555748,36558513,36578865,36581431,36581590,36583469,36591011,36594566	0.928571
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	122322349	122322392	122322349	-	RAMPAGE_only	2	2	13	0.430591	3.700440	chr11	122322142	122322989	LINE|L2|L2c	+	chr11	122089195	122309451	MIR100HG|ENST00000648734.1	-	122089195,122155550,122180335,122202763,122292283,122309249	122091719,122155632,122180398,122202909,122292403,122309451	0.538462
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	106269455	106269504	106269455	-	RAMPAGE_only	3	3	14	0.463713	3.392747	chr7	106269454	106269610	LINE|RTE-X|L4_B_Mam	+	chr7	106248284	106284887	MSTRG.21388.1	-	106248284,106253016,106254363,106267880,106269153,106274945,106277022,106284827	106251193,106253151,106267551,106268600,106272658,106275049,106277179,106284887	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	50785226	50785261	50785257	+	RAMPAGE_only	3	3	15	0.496836	3.378783	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	64990025	64990080	64990025	-	RAMPAGE_only	5	8	37	1.225528	4.879143	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.702703
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	8835256	8835270	8835256	+	RAMPAGE_only	4	4	11	0.364346	3.321928	chr16	8835216	8835364	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.636364
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	101120839	101120874	101120873	+	High_confidence	3	3	11	0.364346	3.121928	chr14	101120596	101120905	LTR|ERVL-MaLR|MLT1J2	-	chr14	101120855	101123542	LINC02285|ENST00000557121.1	+	101120855,101122888	101121144,101123542	0.545455
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	83806175	83806187	83806175	-	High_confidence	2	2	6	0.198734	2.584963	chr16	83806046	83806177	DNA|hAT-Charlie|MER20	+	chr16	83803456	83806127	AC009119.1|ENST00000565064.1	-	83803456,83805622	83803528,83806127	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	74273722	74273773	74273722	-	RAMPAGE_only	3	3	16	0.529958	3.875000	chrX	74273515	74273827	SINE|Alu|AluJb	+	chrX	74209975	74292529	MSTRG.23896.12	-	74209975,74218620,74280930,74281701,74292426	74218577,74280494,74281085,74281848,74292529	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	44752579	44752614	44752600	-	RAMPAGE_only	6	7	28	0.927426	4.430632	chr21	44752494	44752625	LINE|L2|L2a	+	chr21	44497891	44711580	TSPEAR|NM_001272037.1	-	44497891,44504779,44509198,44521882,44525652,44527291,44528451,44529797,44531042,44533684,44567784,44690544,44711432	44499936,44504881,44509386,44522112,44525839,44527518,44528583,44529954,44531133,44533923,44568005,44690606,44711580	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	59729702	59729729	59729702	+	High_confidence	4	4	22	0.728692	4.070656	chr17	59729673	59729983	SINE|Alu|AluSq2	-	chr17	59729714	59737517	VMP1|ENST00000587259.5	+	59729714,59731420,59735337,59737452	59730017,59731522,59735473,59737517	0.636364
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	50766316	50766337	50766336	-	High_confidence	2	3	7	0.231857	2.584963	chr14	50766057	50766321	SINE|MIR|MIR	-	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	37811159	37811167	37811166	+	RAMPAGE_only	4	5	8	0.264979	2.807355	chrX	37811068	37811312	SINE|MIR|MIRc	-	chrX	37780016	37813461	CYBB|NM_000397.3	+	37780016,37782087,37783489,37791974,37793664,37795950,37798954,37801255,37803876,37805005,37806386,37809566,37810790	37780122,37782183,37783600,37792059,37793810,37796141,37799084,37801348,37804130,37805168,37806533,37809691,37813461	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr18	23576947	23576948	23576947	-	High_confidence	5	5	7	0.231857	2.807355	chr18	23576532	23578195	LTR|ERV1|LTR12C	-	chr18	23573451	23576947	NPC1|ENST00000587223.1	-	23573451,23576480	23573574,23576947	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	104907339	104907340	104907339	+	RAMPAGE_only	38	42	43	1.424262	4.689704	chr4	104907196	104907543	LTR|ERVL-MaLR|MLT1I	+	chr4	104973711	105120000	AC096577.1|ENST00000506386.1	+	104973711,105061226,105116828,105119868	104973782,105061474,105116918,105120000	0.883721
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	1407812	1407842	1407831	-	High_confidence	3	3	10	0.331224	3.169925	chr1	1407717	1407798	SINE|Alu|AluYh9	-	chr1	1401895	1407313	MRPL20|NM_017971.3	-	1401895,1405808,1406908,1407130	1402256,1405886,1407019,1407313	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	9668114	9668115	9668114	+	RAMPAGE_only	7	9	10	0.331224	2.503258	chr12	9668111	9668674	LINE|L1|L1MEg1	+	chr12	9648046	9692883	MSTRG.4797.12	+	9648046,9653682,9655872,9656920,9680922,9687901,9692827	9648933,9653808,9655979,9669795,9681033,9688086,9692883	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	55930641	55930642	55930641	+	High_confidence	18	18	18	0.596203	3.947703	chr12	55930357	55930665	SINE|Alu|AluSc8	-	chr12	55930971	55954015	DGKA|ENST00000331886.9	+	55930971,55936422,55937016,55937407,55937977,55938510,55938914,55939185,55939414,55940081,55940313,55940623,55940896,55941251,55941509,55941997,55942173,55951622,55952034,55952340,55952733,55953039,55953349,55953684	55931344,55936567,55937090,55937543,55938052,55938560,55938989,55939305,55939529,55940170,55940433,55940722,55940980,55941325,55941584,55942083,55942263,55951783,55952099,55952431,55952932,55953160,55953410,55954015	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	56582811	56582835	56582834	+	RAMPAGE_only	3	3	7	0.231857	2.521641	chr8	56582691	56583072	LTR|ERVL-MaLR|MSTA	+	chr8	56588384	56588787	RPL37P6|ENST00000464216.1	+	56588384	56588787	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	8788252	8788253	8788252	+	High_confidence	33	34	45	1.490507	5.002964	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.866667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	78532947	78532951	78532947	+	High_confidence	8	11	18	0.596203	3.086049	chr11	78532498	78533068	LTR|ERV1|LTR24C	+	chr11	78533175	78558565	AP003110.1|ENST00000526976.1	+	78533175,78546508,78555214,78558263	78533303,78546640,78555369,78558565	0.944444
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	3380960	3380961	3380960	+	High_confidence	52	52	55	1.821730	5.118427	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.527273
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	111128023	111128033	111128023	-	High_confidence	15	15	33	1.093038	4.363609	chr1	111127946	111128007	DNA|hAT-Charlie|Charlie7a	-	chr1	111118123	111128027	DRAM2|ENST00000461449.5	-	111118123,111118804,111119876,111120515,111126226,111127982	111118267,111118897,111119959,111120693,111126294,111128027	0.636364
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	89888015	89888038	89888037	+	RAMPAGE_only	29	31	73	2.417933	4.733408	chr10	89888002	89888814	LTR|ERV1|LTR8B	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.657534
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	32927967	32927977	32927976	+	RAMPAGE_only	119	124	271	8.976162	6.413373	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.800738
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	42837773	42837774	42837773	-	RAMPAGE_only	18	19	23	0.761815	4.061482	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.869565
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	152100757	152100790	152100778	+	High_confidence	4	5	23	0.761815	4.349649	chr4	152100450	152100876	LTR|ERVL|LTR16	-	chr4	152100753	152104232	LINC02273|ENST00000509332.5	+	152100753,152101483,152103626	152100817,152101580,152104232	0.739130
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	79481739	79481759	79481758	-	RAMPAGE_only	3	4	11	0.364346	2.846439	chr5	79481262	79481938	LINE|L1|L1MEc	+	chr5	79375929	79512794	HOMER1|ENST00000282260.10	-	79375929,79396822,79397526,79450989,79456861,79512769	79376197,79396903,79397637,79451121,79457018,79512794	0.818182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	8413615	8413638	8413637	+	High_confidence	3	3	9	0.298101	2.641604	chr17	8413630	8413872	SINE|MIR|MIRc	+	chr17	8413194	8446884	NDEL1|ENST00000580237.5	+	8413194,8444259,8444623,8445710,8446753	8413269,8444357,8444742,8445864,8446884	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	95169741	95169742	95169741	-	RAMPAGE_only	9	9	9	0.298101	2.725481	chr7	95169696	95169786	LINE|L1|L1ME1	+	chr7	95154712	95214332	AC002429.2|ENST00000417881.2	-	95154712,95174946,95176492,95214184	95156951,95175089,95176531,95214332	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	197198036	197198054	197198053	-	High_confidence	4	4	9	0.298101	2.750000	chr2	197198011	197198416	LINE|L2|L2c	-	chr2	196994525	197198038	ANKRD44|ENST00000328737.6	-	196994525,196998336,196998906,197000418,197001752,197005693,197007805,197008943,197013510,197025195,197078702,197081644,197083368,197086679,197088710,197089949,197099815,197110765,197121331,197122649,197125380,197125836,197136591,197147026,197187022,197198009	196995461,196998419,196999052,197000502,197001840,197005910,197007923,197009031,197013712,197025267,197078814,197081725,197083509,197086748,197088774,197090032,197099930,197110844,197121544,197122792,197125468,197126037,197136662,197147105,197187106,197198038	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	15602157	15602171	15602157	-	High_confidence	9	9	17	0.563080	3.852169	chrX	15602053	15602111	LINE|CR1|L3	-	chrX	15594886	15602148	ACE2|ENST00000484756.1	-	15594886,15600725,15601955	15595003,15601014,15602148	0.647059
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	91953547	91953548	91953547	+	RAMPAGE_only	4	4	7	0.231857	2.584963	chr10	91953570	91953644	LINE|L1|L1MC	+	chr10	91935151	92030321	BTAF1|ENST00000544642.2	+	91935151,91935651,91939951,91942421,91951402,91953736,91956527,91957224,91959064,91959784,91959977,91962537,91964076,91966636,91980453,91981642,91982082,91982586,91984200,91989153,91992118,91993693,91994534,91996368,91997602,92008122,92008828,92009040,92011072,92011285,92013666,92013898,92016339,92018782,92024755,92026591,92027129,92028789	91935160,91935780,91940066,91942568,91951566,91953873,91956657,91957293,91959154,91959880,91960154,91962678,91964201,91966757,91980558,91981792,91982225,91982761,91984404,91989580,91992309,91993847,91994644,91996570,91997751,92008275,92008950,92009208,92011150,92011415,92013808,92014029,92016465,92018935,92024967,92026751,92027300,92030321	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	96303159	96303167	96303166	-	RAMPAGE_only	3	3	7	0.231857	2.584963	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	49657340	49657356	49657355	-	High_confidence	9	9	20	0.662447	3.746439	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	186324019	186324020	186324019	-	RAMPAGE_only	8	9	9	0.298101	2.500000	chr1	186323983	186324220	SINE|MIR|MIRb	+	chr1	186311651	186375325	TPR|NM_003292.2	-	186311651,186314628,186317481,186318446,186318732,186320311,186322317,186322517,186323685,186325763,186326103,186327459,186331497,186332194,186333121,186334324,186335067,186335337,186336495,186337012,186338032,186339641,186341027,186341251,186343325,186343905,186344374,186345579,186346134,186347291,186350222,186351329,186351975,186353687,186355409,186355634,186356285,186357396,186358542,186359798,186360272,186360764,186361621,186361788,186362287,186362836,186363341,186367885,186370969,186373358,186374877	186314026,186314724,186317600,186318603,186318828,186320418,186322412,186322586,186323870,186325854,186326235,186327660,186331581,186332343,186333394,186334533,186335129,186335543,186336694,186337156,186338243,186339772,186341159,186341389,186343473,186344090,186344578,186345696,186346287,186347458,186350388,186351470,186352110,186353850,186355558,186355768,186356449,186357623,186358650,186359996,186360364,186360905,186361709,186361869,186362380,186363001,186363445,186367982,186371043,186373463,186375325	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	86482577	86482578	86482577	+	RAMPAGE_only	55	55	62	2.053587	5.123231	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.822581
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	212697280	212697283	212697280	-	RAMPAGE_only	9	12	18	0.596203	3.503258	chr1	212697248	212697403	SINE|MIR|MIRb	-	chr1	212686417	212698755	BATF3|ENST00000478275.1	-	212686417,212696960	212686979,212698755	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	20685285	20685307	20685306	-	High_confidence	5	5	23	0.761815	4.011365	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.782609
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	77127872	77127877	77127872	+	High_confidence	121	121	210	6.955698	6.872180	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77194757	MSTRG.10944.25	+	77127872,77142645,77143566,77190802,77191187,77193420,77194676	77128087,77142750,77143659,77190952,77191312,77193549,77194757	0.823810
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	33931146	33931167	33931166	+	High_confidence	5	5	20	0.662447	3.531631	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	77736978	77737051	77736978	-	High_confidence	6	7	24	0.794937	3.970176	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.916667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	207662375	207662376	207662375	+	High_confidence	24	24	28	0.927426	4.060262	chr2	207662277	207662604	LTR|ERVL-MaLR|MLT1A1	+	chr2	207662374	207667024	LINC01857|ENST00000429730.1	+	207662374,207666680	207662522,207667024	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	202471466	202471469	202471468	+	RAMPAGE_only	3	5	6	0.198734	2.584963	chr1	202470938	202471780	LINE|L1|L1ME3Cz	-	chr1	202462742	202581152	PPP1R12B|ENST00000491336.5	+	202462742,202488532,202493113,202495292,202495569,202496780,202558876,202562777,202564442,202567777,202569146,202580473	202463097,202488623,202493317,202495482,202495682,202496822,202558893,202562922,202564547,202567831,202569197,202581152	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	143558019	143558020	143558019	+	High_confidence	9	10	10	0.331224	3.169925	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.700000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	91462209	91462216	91462209	-	High_confidence	5	5	10	0.331224	2.646439	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	108923712	108923731	108923712	+	RAMPAGE_only	3	4	14	0.463713	3.378783	chr11	108923524	108923886	LINE|L2|L2c	-	chr11	108929518	108940925	DDX10|ENST00000534221.1	+	108929518,108940245	108929708,108940925	0.785714
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	157487448	157487449	157487448	-	RAMPAGE_only	24	25	26	0.861182	3.918296	chr3	157486755	157488128	LINE|L1|L1ME3C	+	chr3	157460094	157489356	VEPH1|ENST00000482434.1	-	157460094,157470313,157489054	157460355,157470529,157489356	0.615385
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	112850275	112850280	112850275	+	High_confidence	2	2	7	0.231857	2.807355	chr1	112850184	112850373	SINE|MIR|MIR	+	chr1	112850075	112877867	AL390729.1|ENST00000422022.1	+	112850075,112877729	112850427,112877867	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	30563893	30563895	30563894	-	High_confidence	7	9	13	0.430591	3.251629	chr7	30563654	30564076	LTR|ERVL-MaLR|MLT1C	-	chr7	30548356	30564617	GARS-DT|ENST00000355837.4	-	30548356,30563722	30562128,30564617	0.769231
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	31004516	31004544	31004543	-	RAMPAGE_only	4	4	11	0.364346	3.459432	chr3	31004363	31004856	LTR|ERVL-MaLR|MLT1G1	-	chr3	30726199	30894765	GADL1|ENST00000282538.9	-	30726199,30778178,30786354,30800888,30833852,30834216,30838996,30844209,30844386,30849995,30850834,30854698,30857014,30861592,30894577	30728415,30778268,30786406,30801088,30833934,30834281,30839113,30844264,30844466,30850111,30850941,30854789,30857141,30861765,30894765	0.545455
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	122074155	122074161	122074155	-	RAMPAGE_only	7	8	13	0.430591	3.022055	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065943	122076083	LOX|ENST00000505593.5	-	122065943,122070052,122070493,122074012,122075403,122076017	122066749,122070168,122070589,122074169,122075541,122076083	0.846154
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	38825311	38825361	38825360	+	RAMPAGE_only	11	11	41	1.358017	4.723406	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.829268
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	111284841	111284875	111284874	-	High_confidence	148	149	221	7.320044	6.653774	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.619910
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	41940217	41940222	41940221	-	High_confidence	21	21	41	1.358017	4.458103	chr22	41939903	41940386	LINE|L2|L2a	+	chr22	41938720	41940219	CENPM|NM_001110215.2	-	41938720,41940138	41939196,41940219	0.707317
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr18	12653079	12653098	12653097	-	High_confidence	3	3	8	0.264979	2.521641	chr18	12653065	12653265	DNA|hAT-Charlie|MER20	+	chr18	12506495	12653085	SPIRE1|ENST00000449797.5	-	12506495,12512453,12535475,12546673,12635061,12653000	12506641,12512531,12535601,12546904,12635096,12653085	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	4239748	4239749	4239748	-	High_confidence	14	14	20	0.662447	4.084184	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	134597814	134597857	134597816	+	High_confidence	4	7	26	0.861182	3.584303	chr3	134597473	134597869	LTR|ERVL|ERV3-16A3_LTR	+	chr3	134597823	134628104	EPHB1|ENST00000472904.5	+	134597823,134615183,134627939	134597984,134615438,134628104	0.653846
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	127082987	127082989	127082988	-	High_confidence	4	7	10	0.331224	2.721928	chr2	127082958	127083081	LINE|L1|L1MC4	-	chr2	127048037	127082967	MSTRG.13622.12	-	127048037,127050420,127050801,127051153,127057472,127059010,127062114,127063570,127063932,127068923,127069994,127070552,127070761,127076625,127081831	127048633,127050522,127050912,127051243,127057601,127059155,127062197,127063646,127064018,127069031,127070090,127070647,127070816,127076706,127082967	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	155058784	155058785	155058784	+	High_confidence	6	6	9	0.298101	2.947703	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	174238901	174238910	174238909	+	RAMPAGE_only	3	3	7	0.231857	2.584963	chr1	174233266	174239293	LINE|L1|L1PA2	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	39530241	39530257	39530241	-	RAMPAGE_only	7	7	13	0.430591	3.251629	chr22	39530129	39530441	LINE|L2|L2a	-	chr22	39529096	39532093	RPS19BP1|ENST00000488602.1	-	39529096,39529819	39529623,39532093	0.923077
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	172854440	172854467	172854440	+	RAMPAGE_only	2	3	11	0.364346	3.121928	chr5	172854401	172854991	DNA|TcMar-Tigger|MER6A	+	chr5	172834384	172924061	ERGIC1|ENST00000520642.5	+	172834384,172888698,172897001,172914713,172915517,172924004	172834433,172888760,172897074,172914838,172915690,172924061	0.636364
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	86003891	86003922	86003904	-	High_confidence	2	2	12	0.397468	2.845351	chr11	86003863	86004511	LINE|L1|L1ME2	+	chr11	86001030	86003778	PICALM|ENST00000533350.1	-	86001030,86003365	86001158,86003778	0.916667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	36481313	36481335	36481313	-	High_confidence	3	3	11	0.364346	3.095795	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467590	36481340	TXN2|ENST00000403313.5	-	36467590,36476732,36480574,36481142	36467917,36476856,36480837,36481340	0.818182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	45004518	45004585	45004518	-	High_confidence	12	14	47	1.556751	4.662483	chr21	45004415	45004509	LINE|L1|L1MB7	-	chr21	44999207	45004727	PICSAR|ENST00000615826.1	-	44999207,45004443	44999656,45004727	0.851064
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	75582071	75582078	75582071	+	RAMPAGE_only	3	3	7	0.231857	2.584963	chr13	75581999	75582122	SINE|MIR|MIRc	+	chr13	75569122	75605930	UCHL3|ENST00000606347.1	+	75569122,75594914,75604768,75605728	75569507,75594990,75604827,75605930	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	93231761	93231776	93231761	+	RAMPAGE_only	6	6	10	0.331224	2.721928	chr15	93231353	93231820	LINE|L1|L1MD2	-	chr15	93312556	93554870	AC091078.1|ENST00000543286.5	+	93312556,93322222,93530236,93553604	93312977,93322346,93530437,93554870	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	63581668	63581714	63581713	+	RAMPAGE_only	7	7	20	0.662447	3.826875	chr6	63581722	63581820	SINE|MIR|MIRb	+	chr6	63572011	63583587	AL135905.2|ENST00000370651.6	+	63572011,63576435,63578436,63578897,63579256,63580056	63572719,63576985,63578529,63579028,63579331,63583587	0.950000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	35713479	35713490	35713479	-	High_confidence	3	3	10	0.331224	3.121928	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	81418792	81418818	81418792	-	RAMPAGE_only	2	2	8	0.264979	2.521641	chr5	81418515	81418848	DNA|TcMar-Tigger|Tigger3a	-	chr5	81413020	81751253	SSBP2|ENST00000320672.8	-	81413020,81428584,81437429,81440557,81442652,81446867,81448789,81461054,81466973,81473699,81474495,81489249,81513627,81615472,81636556,81650266,81750980	81420533,81428683,81437458,81440636,81442723,81446922,81448825,81461103,81467041,81473770,81474562,81489309,81513717,81615557,81636618,81650339,81751253	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	86826108	86826131	86826129	-	RAMPAGE_only	5	9	17	0.563080	3.327820	chr2	86826118	86826191	SINE|MIR|MIR1_Amn	+	chr2	86815346	86861915	CD8B|ENST00000393759.6	-	86815346,86822320,86844921,86846683,86852996,86858056,86861822	86815718,86822374,86844958,86846773,86853086,86858416,86861915	0.941176
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	11494007	11494028	11494027	+	High_confidence	4	4	13	0.430591	3.251629	chr8	11493862	11494036	SINE|MIR|MIRb	-	chr8	11494011	11564599	BLK|NM_001715.2	+	11494011,11543223,11546051,11548031,11549023,11550158,11554742,11555331,11556657,11557961,11561301,11562978,11563902	11494591,11543347,11546103,11548125,11549122,11550262,11554889,11555484,11556837,11558038,11561452,11563110,11564599	0.769231
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	182390050	182390057	182390056	-	High_confidence	3	3	8	0.264979	2.807355	chr1	182389985	182390241	SINE|Alu|AluSx	+	chr1	182382893	182390304	GLUL|ENST00000491322.1	-	182382893,182388571	182387292,182390304	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	151025258	151025269	151025258	+	High_confidence	3	3	7	0.231857	2.521641	chr5	151025181	151025313	SINE|MIR|MIR3	+	chr5	151025343	151028954	GPX3|ENST00000521632.1	+	151025343,151026899,151027908	151025493,151027017,151028954	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	30561535	30561560	30561535	-	High_confidence	18	20	53	1.755486	4.813661	chr7	30561212	30561820	DNA|hAT?|MER99	+	chr7	30516974	30561516	GARS-DT|ENST00000578293.6	-	30516974,30524366,30550635,30551317,30552099,30561465	30517498,30524486,30550781,30551395,30552179,30561516	0.528302
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	93431427	93431466	93431443	-	RAMPAGE_only	2	2	14	0.463713	3.392747	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.928571
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	37187475	37187484	37187483	+	RAMPAGE_only	12	13	44	1.457384	4.314783	chr9	37187210	37187548	DNA|hAT-Charlie|MER1B	-	chr9	37144931	37356980	ZCCHC7|ENST00000488607.5	+	37144931,37147361,37302187,37304187,37305543,37327798,37349356,37354709,37356834	37144997,37147445,37302231,37304313,37305714,37327834,37349452,37354824,37356980	0.772727
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	48492783	48492791	48492783	-	High_confidence	16	17	32	1.059916	4.607264	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.843750
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	153967486	153967512	153967486	+	High_confidence	11	12	29	0.960549	4.378783	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.517241
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	107732851	107732874	107732873	-	RAMPAGE_only	8	8	29	0.960549	3.995238	chr11	107732820	107733121	SINE|Alu|AluSz	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	158863388	158863410	158863388	+	RAMPAGE_only	8	10	35	1.159283	4.741364	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.885714
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	79492572	79492616	79492595	+	High_confidence	7	9	40	1.324895	4.734184	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	170538229	170538259	170538258	-	RAMPAGE_only	5	5	12	0.397468	2.663533	chr1	170538033	170538257	SINE|MIR|MIRc	-	chr1	170460452	170517706	AL354732.1|ENST00000416416.1	-	170460452,170517593	170462419,170517706	0.916667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	128619061	128619065	128619061	+	RAMPAGE_only	3	3	8	0.264979	3.000000	chr7	128619037	128619073	LINE|L2|L2c	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	65441567	65442031	65441801	+	RAMPAGE_only	21	21	375	12.420889	6.232073	chr11	65441504	65441864	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	38612580	38612626	38612622	+	RAMPAGE_only	30	33	118	3.908440	4.669233	chrX	38612500	38614189	LINE|L1|HAL1	-	chrX	38570682	38675816	TSPAN7|ENST00000488893.5	+	38570682,38666120,38671375,38674220,38675704	38570946,38666309,38671450,38674316,38675816	0.737288
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	17386955	17387000	17386999	+	High_confidence	11	12	43	1.424262	4.739991	chr10	17386994	17387141	LTR|ERVL|LTR33	-	chr10	17386993	17408286	ST8SIA6-AS1|ENST00000451225.2	+	17386993,17399104,17408062	17387075,17399202,17408286	0.790698
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	34807244	34807279	34807278	+	RAMPAGE_only	24	24	69	2.285444	4.762508	chr5	34807136	34807608	LINE|L2|L2b	-	chr5	34687558	34830785	RAI14|ENST00000506376.1	+	34687558,34757467,34795938,34803711,34807799,34808583,34811011,34811766,34812179,34813573,34814582,34818796,34821731,34822955,34826329,34829731,34830687	34687722,34757598,34796027,34803776,34807857,34808654,34811118,34811945,34812208,34813660,34814669,34818851,34821850,34824491,34826479,34829797,34830785	0.927536
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	32677531	32677571	32677539	+	High_confidence	6	7	25	0.828059	4.483856	chr15	32677294	32677614	LTR?|LTR?|MamRep605	+	chr15	32677559	32696626	SCG5|ENST00000498069.5	+	32677559,32679765,32684559,32691709,32696513	32677744,32679915,32684669,32691763,32696626	0.720000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	95938640	95938695	95938694	-	RAMPAGE_only	2	2	10	0.331224	2.725481	chr5	95938441	95938722	SINE|Alu|AluJr	+	chr5	95913819	95961782	MSTRG.18734.8	-	95913819,95919423,95927524,95961574	95913934,95927402,95943049,95961782	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	70154237	70154239	70154237	+	High_confidence	1411	2171	2579	85.422593	6.514335	chr4	70153923	70154270	LINE|RTE-X|L4_A_Mam	-	chr4	70154242	70166606	PRR27|ENST00000509633.1	+	70154242,70154745,70156053,70158327,70161585,70162694	70154426,70154791,70156077,70158900,70161630,70166606	0.957736
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	6516440	6516458	6516440	-	RAMPAGE_only	2	3	9	0.298101	2.947703	chr8	6516262	6516469	SINE|MIR|MIRb	-	chr8	6503079	6563044	ANGPT2|ENST00000338312.10	-	6503079,6508931,6513677,6514676,6519863,6521177,6527554,6562646	6503261,6509062,6513844,6514778,6519994,6521410,6527676,6563044	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	29643375	29643378	29643375	-	RAMPAGE_only	3	5	8	0.264979	3.000000	chr17	29643278	29643403	LTR|ERVL-MaLR|MLT1L	+	chr17	29630799	29761417	SSH2|ENST00000649863.1	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677738,29684684,29695523,29703062,29761417	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	13419702	13419730	13419729	-	RAMPAGE_only	4	4	11	0.364346	2.913977	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.909091
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	34993112	34993142	34993118	+	High_confidence	2	3	10	0.331224	2.725481	chr9	34992995	34993120	SINE|MIR|MIR3	-	chr9	34992871	34996519	DNAJB5|ENST00000443266.2	+	34992871,34993199,34996264	34992986,34993444,34996519	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	79631441	79631453	79631441	+	High_confidence	3	3	11	0.364346	3.121928	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.909091
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	80059915	80059933	80059918	+	High_confidence	175	203	420	13.911396	5.512186	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.976190
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	55618850	55618887	55618850	-	High_confidence	13	14	37	1.225528	4.704511	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.810811
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	155679929	155679930	155679929	-	High_confidence	10	10	10	0.331224	2.921928	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	9986887	9986905	9986887	+	High_confidence	9	11	30	0.993671	4.593069	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.566667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	90751539	90751574	90751539	+	RAMPAGE_only	3	3	14	0.463713	3.700440	chr15	90751534	90751607	DNA|TcMar-Tigger|Tigger8	+	chr15	90750007	90760822	BLM|ENST00000558599.1	+	90750007,90751786,90754810,90760593	90750067,90751946,90754938,90760822	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	29193421	29193460	29193459	+	High_confidence	63	64	135	4.471520	4.616521	chr21	29193019	29193674	LTR|ERV1|MER50B	+	chr21	29193493	29288205	LINC00189|NR_027072.2	+	29193493,29287983	29194260,29288205	0.992593
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	53464815	53464834	53464833	+	RAMPAGE_only	3	3	11	0.364346	3.095795	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.818182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	92914950	92914974	92914950	+	High_confidence	31	31	81	2.682912	5.768785	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.604938
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	101217581	101217595	101217594	-	High_confidence	5	5	18	0.596203	3.690117	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.944444
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	28090339	28090398	28090339	+	High_confidence	33	36	196	6.491985	4.510633	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	44627095	44627096	44627095	+	RAMPAGE_only	7	7	7	0.231857	2.807355	chr19	44626936	44627280	LINE|L2|L2b	-	chr19	44613629	44636781	IGSF23|ENST00000402988.5	+	44613629,44623706,44627419,44635400,44636418	44613770,44623972,44627573,44635465,44636781	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	15032194	15032213	15032194	+	High_confidence	11	11	27	0.894304	3.972687	chr10	15031985	15032436	LTR|ERVL|MLT2A2	+	chr10	15032226	15065611	OLAH|ENST00000428897.5	+	15032226,15047125,15049634,15061723,15064402,15065583	15032350,15047320,15049765,15061862,15064502,15065611	0.703704
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	46266488	46266489	46266488	-	High_confidence	7	7	7	0.231857	2.807355	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	140700445	140700452	140700445	+	High_confidence	1323	1596	2673	88.536096	5.070914	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.987654
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	143070964	143070965	143070964	+	RAMPAGE_only	30	32	35	1.159283	4.594672	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143129313	143768352	ARHGAP15|ENST00000295095.10	+	143129313,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.742857
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	57300338	57300344	57300338	+	High_confidence	52	53	138	4.570887	5.336859	chr15	57300291	57300572	SINE|Alu|AluSg	-	chr15	57300364	57307761	LINC00926|ENST00000501726.1	+	57300364,57305318,57307541	57300924,57307068,57307761	0.905797
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	20208042	20208043	20208042	+	RAMPAGE_only	15	16	16	0.529958	3.906891	chr7	20207849	20208212	LTR|ERVL-MaLR|THE1D	+	chr7	20217576	20221700	LOC100506098|NR_134567.1	+	20217576,20217787,20218255,20219491,20221342	20217622,20217858,20218363,20219756,20221700	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	64999443	64999444	64999443	-	High_confidence	1132	1149	1335	44.218364	7.284225	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64971775	64999428	MSTRG.20969.1	-	64971775,64981386,64981983,64989946,64999120	64979536,64981482,64982116,64993414,64999428	0.880899
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	121313971	121314021	121314020	+	RAMPAGE_only	62	63	266	8.810551	5.434895	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.992481
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	50267467	50267488	50267475	+	High_confidence	2	3	10	0.331224	2.947703	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	62897400	62897431	62897430	+	High_confidence	10	10	32	1.059916	4.429229	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.562500
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	147937529	147937543	147937542	+	RAMPAGE_only	3	5	6	0.198734	2.584963	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	MSTRG.24132.19	+	147940580,147943130,147944904,147945533,147948682	147940662,147943326,147945051,147945616,147950315	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	30373014	30373015	30373014	+	High_confidence	36	38	38	1.258650	4.353870	chr16	30372675	30373134	LINE|L2|L2b	+	chr16	30372317	30377991	MYLPF|NM_001324458.1	+	30372317,30372877,30374821,30375819,30376144,30376422,30376619,30377653,30377795	30372360,30373016,30374860,30375912,30376220,30376527,30376698,30377702,30377991	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	70180325	70180336	70180325	+	High_confidence	4	4	11	0.364346	2.921928	chr12	70180098	70180628	LTR|ERVL|MLT2B2	+	chr12	70180337	70202004	AC084032.1|ENST00000552324.1	+	70180337,70199732,70201714	70180538,70199819,70202004	0.727273
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	150118757	150118815	150118788	-	RAMPAGE_only	4	4	23	0.761815	4.106603	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.913043
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	90762385	90762407	90762406	+	High_confidence	4	7	15	0.496836	3.521641	chr15	90762254	90762815	LINE|L2|L2b	-	chr15	90762395	90811327	BLM|ENST00000560136.5	+	90762395,90762965,90766909,90769132,90769437,90782821,90784920,90790648,90794166,90798189,90803520,90804166,90809136,90811204	90762422,90763157,90767023,90769231,90769586,90782928,90785081,90790844,90794357,90798337,90803720,90804359,90809259,90811327	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	102978793	102978828	102978793	+	RAMPAGE_only	2	2	10	0.331224	3.321928	chr8	102978224	102978995	DNA|TcMar-Tigger|Tigger6a	+	chr8	102864279	103001684	AZIN1-AS1|ENST00000520750.6	+	102864279,102879894,102937623,102941920,102977586,102995624,103000008	102864623,102880058,102937757,102942053,102978955,102995682,103001684	0.700000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	6251226	6251233	6251232	+	RAMPAGE_only	6	6	10	0.331224	2.641604	chr9	6251008	6251757	DNA|hAT-Charlie|Charlie17b	+	chr9	6241694	6257982	IL33|ENST00000456383.3	+	6241694,6250473,6251139,6253551,6254461,6255967	6241785,6250599,6251265,6253602,6254553,6257982	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	110874160	110874192	110874160	+	RAMPAGE_only	3	6	26	0.861182	3.163074	chr10	110874056	110874276	SINE|MIR|MIRb	+	chr10	110871954	110898122	MSTRG.3177.6	+	110871954,110883002,110885252,110887664,110890599,110894090,110894411,110895947,110898027	110881535,110883097,110885366,110887814,110890670,110894198,110894522,110896087,110898122	0.923077
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	74849980	74849999	74849998	+	RAMPAGE_only	24	24	40	1.324895	3.534830	chr8	74849937	74850052	LINE|L2|L2c	-	chr8	74824536	74855044	PI15|NM_015886.4	+	74824536,74825209,74843980,74845127,74845381,74849117	74824675,74825522,74844099,74845260,74845497,74855044	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	86453324	86453342	86453324	-	High_confidence	5	7	14	0.463713	3.467720	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453325	MAPK10|ENST00000641313.1	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86354644,86453325	0.928571
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	43777281	43777285	43777284	+	High_confidence	10	10	16	0.529958	3.456565	chr6	43777305	43777366	LINE|CR1|L3b	+	chr6	43777719	43786439	VEGFA|ENST00000497139.5	+	43777719,43778888,43784540	43778536,43778918,43786439	0.812500
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	114295302	114295337	114295318	+	High_confidence	3	3	9	0.298101	2.947703	chr11	114294850	114295386	LTR|ERV1|LTR35A	-	chr11	114295812	114312516	NNMT|NM_006169.2	+	114295812,114297950,114312044	114296710,114298158,114312516	0.555556
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	39064932	39064933	39064932	-	RAMPAGE_only	6	6	9	0.298101	2.500000	chr14	39064766	39064897	SINE|Alu|FLAM_C	-	chr14	39031918	39088723	SEC23A|ENST00000537403.5	-	39031918,39039030,39040731,39042785,39045162,39048651,39055142,39061764,39063323,39064912,39067172,39074414,39075934,39085761,39086928,39087523	39033328,39039096,39040887,39042872,39045324,39048729,39055296,39061871,39063413,39064993,39067296,39074530,39076093,39085906,39087008,39088723	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	89837965	89837969	89837965	-	High_confidence	5	5	10	0.331224	2.921928	chr15	89837927	89838155	SINE|MIR|MIRb	+	chr15	89835423	89837954	AP3S2|ENST00000558926.1	-	89835423,89837614	89835643,89837954	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	25244109	25244144	25244109	-	High_confidence	4	8	34	1.126161	3.385938	chr1	25244059	25244116	SINE|Alu|Alu	-	chr1	25242248	25244105	RSRP1|ENST00000569495.5	-	25242248,25242538,25243549	25242426,25242705,25244105	0.911765
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	9065161	9065174	9065167	+	High_confidence	5	5	26	0.861182	4.101227	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.615385
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	38881679	38881706	38881696	+	RAMPAGE_only	2	2	9	0.298101	2.750000	chr5	38881676	38881753	SINE|tRNA-Deu|AmnSINE2	+	chr5	38845998	38935641	OSMR|ENST00000274276.7	+	38845998,38869031,38876200,38881592,38883826,38885348,38886038,38903881,38904352,38917545,38918839,38921614,38923149,38924421,38925203,38931882,38932462,38932871	38846387,38869117,38876373,38881764,38884111,38885484,38886190,38904024,38904503,38917622,38919062,38921794,38923254,38924595,38925371,38931964,38932535,38935641	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	129489073	129489126	129489125	+	High_confidence	9	12	44	1.457384	5.078639	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.818182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	35164201	35164236	35164235	+	High_confidence	6	6	18	0.596203	3.350209	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	0.944444
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	137218704	137218760	137218725	-	High_confidence	18	20	46	1.523629	4.811499	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.804348
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	28538632	28538636	28538635	-	High_confidence	8	8	14	0.463713	3.521641	chr16	28538407	28538698	SINE|Alu|AluJo	+	chr16	28537506	28538951	NUPR1|ENST00000567646.1	-	28537506,28538005,28538525,28538795	28537669,28538155,28538654,28538951	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	69315786	69315822	69315821	+	High_confidence	7	7	38	1.258650	4.859641	chr10	69315806	69315937	SINE|MIR|MIRc	+	chr10	69315853	69401882	HK1|NM_033496.2	+	69315853,69343826,69359896,69364782,69368535,69369236,69369440,69376933,69379861,69382486,69384332,69384795,69386322,69389196,69392124,69394949,69398594,69400990	69316014,69343989,69360045,69364902,69368631,69369336,69369624,69377089,69380095,69382791,69384481,69384915,69386418,69389296,69392308,69395105,69398828,69401882	0.894737
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	25562793	25562794	25562793	+	RAMPAGE_only	68	68	95	3.146625	5.822156	chr1	25562741	25562929	SINE|MIR|MIRb	+	chr1	25553363	25568884	LDLRAP1|ENST00000488127.1	+	25553363,25554859,25557152,25562643,25563069,25563660,25566847	25554064,25554972,25557267,25562716,25563153,25565207,25568884	0.515789
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	48693196	48693220	48693209	+	High_confidence	7	7	20	0.662447	3.721612	chr22	48693219	48693333	LINE|L1|L1ME4c	+	chr22	48693246	48750408	FAM19A5|ENST00000406880.1	+	48693246,48707716,48749838	48693381,48707844,48750408	0.950000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	50756741	50756780	50756741	-	RAMPAGE_only	5	5	12	0.397468	3.277613	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	108474797	108474817	108474801	+	RAMPAGE_only	2	2	9	0.298101	2.750000	chr2	108474176	108474954	LINE|L2|L2c	-	chr2	108471813	108475394	GCC2|ENST00000462897.2	+	108471813,108472826,108474788	108472116,108472899,108475394	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	35449689	35449726	35449714	+	RAMPAGE_only	8	9	46	1.523629	4.733029	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.760870
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	70164245	70164291	70164252	+	RAMPAGE_only	3	4	23	0.761815	3.936260	chr4	70163611	70164288	LINE|L2|L2a	+	chr4	70154242	70166606	PRR27|ENST00000509633.1	+	70154242,70154745,70156053,70158327,70161585,70162694	70154426,70154791,70156077,70158900,70161630,70166606	0.956522
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	57451497	57451576	57451534	+	RAMPAGE_only	4	5	32	1.059916	4.238609	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.968750
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	42644615	42644626	42644615	-	High_confidence	3	3	8	0.264979	2.500000	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	201115961	201116014	201115997	+	High_confidence	6	6	28	0.927426	4.039149	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	143070999	143071000	143070999	+	RAMPAGE_only	7	8	11	0.364346	3.095795	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143091361	143238352	ARHGAP15|ENST00000409869.5	+	143091361,143092156,143155476,143202133,143216383,143228580,143235945	143091422,143092258,143155655,143202202,143216445,143228668,143238352	0.636364
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	144106393	144106394	144106393	+	High_confidence	5	6	7	0.231857	2.521641	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	31053448	31053449	31053448	+	High_confidence	9	13	13	0.430591	3.546594	chr6	31053266	31053607	LTR|ERVL-MaLR|THE1A	+	chr6	31053449	31059890	HCG22|NR_003948.2	+	31053449,31054099,31055709,31059407	31053531,31054516,31056910,31059890	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	50756930	50756943	50756942	-	RAMPAGE_only	5	5	9	0.298101	2.947703	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	26399442	26399443	26399442	-	High_confidence	4	5	7	0.231857	2.584963	chr7	26399411	26399720	DNA|hAT-Charlie|MER33	+	chr7	26372018	26399418	LOC105375304|NR_136272.1	-	26372018,26399340	26372568,26399418	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr18	80148048	80148049	80148048	+	High_confidence	45	48	51	1.689241	5.308758	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.862745
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	171137782	171137804	171137787	+	High_confidence	8	11	20	0.662447	3.997670	chr1	171137826	171137983	SINE|MIR|MIR3	+	chr1	171137739	171161568	FMO6P|ENST00000367754.3	+	171137739,171146477,171147625,171149559,171151909,171154141,171161157	171138644,171146519,171147768,171149759,171152265,171154214,171161568	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	17282887	17282903	17282887	+	RAMPAGE_only	2	2	8	0.264979	2.750000	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17331523	MSTRG.3592.15	+	17277022,17282788,17295323,17296103,17301743,17309571,17310824,17311192,17311871,17312027,17315385,17330126,17330901,17331411	17277095,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17331523	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	60182437	60182445	60182444	-	High_confidence	4	4	11	0.364346	3.121928	chr11	60182383	60182456	SINE|MIR|MIRb	-	chr11	60172014	60183040	MS4A6A|ENST00000420732.6	-	60172014,60173027,60175505,60178259,60179830,60181580,60182977	60172253,60173129,60175611,60178316,60179965,60181741,60183040	0.818182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	101670319	101670409	101670407	+	RAMPAGE_only	11	21	61	2.020465	4.913395	chr12	101670426	101670659	LINE|CR1|L3b	+	chr12	101666202	101685811	MYBPC1|ENST00000549608.1	+	101666202,101667731,101670320,101673426,101675291,101677234,101678101,101680342,101685581	101666797,101667899,101670409,101673622,101675431,101677394,101678238,101680529,101685811	0.967213
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	20446996	20446997	20446996	-	High_confidence	7	7	7	0.231857	2.807355	chr16	20446813	20447004	SINE|MIR|MIRb	+	chr16	20441249	20447000	AC137056.1|ENST00000575772.1	-	20441249,20442225,20445992,20446866	20441586,20442388,20446111,20447000	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	89479889	89479890	89479889	-	High_confidence	287	287	290	9.605487	5.916662	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89362238	89479890	SEMA4D|ENST00000537934.5	-	89362238,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89418362,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89418437,89455953,89479890	0.862069
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	106265904	106265928	106265921	-	RAMPAGE_only	6	6	20	0.662447	3.892407	chr7	106265919	106266168	SINE|MIR|MIRc	-	chr7	106248284	106284887	MSTRG.21388.1	-	106248284,106253016,106254363,106267880,106269153,106274945,106277022,106284827	106251193,106253151,106267551,106268600,106272658,106275049,106277179,106284887	0.950000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	12927701	12927751	12927733	+	High_confidence	29	29	84	2.782279	6.008214	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.678571
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	31887208	31887220	31887216	-	High_confidence	6	11	25	0.828059	3.267601	chr12	31887197	31887704	LTR|ERV1|LOR1a	+	chr12	31876968	31887203	LOC105369723|NR_135029.1	-	31876968,31887166	31877893,31887203	0.960000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	29667464	29667465	29667464	-	RAMPAGE_only	22	22	29	0.960549	4.116265	chr17	29667384	29667678	DNA|hAT-Charlie|MER1B	+	chr17	29630799	29761417	SSH2|ENST00000649863.1	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677738,29684684,29695523,29703062,29761417	0.862069
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	128241286	128241324	128241323	-	High_confidence	5	5	27	0.894304	3.829275	chr6	128241276	128241454	DNA|hAT-Charlie|MER5A	+	chr6	128184431	128241299	PTPRK|ENST00000368205.7	-	128184431,128218921,128240034,128241222	128184725,128219096,128240150,128241299	0.740741
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	70473327	70473350	70473349	+	RAMPAGE_only	5	5	13	0.430591	3.022055	chr4	70473152	70473457	SINE|Alu|AluJb	+	chr4	70472196	70481278	MUC7|ENST00000514512.1	+	70472196,70480798	70472291,70481278	0.846154
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	212697307	212697343	212697342	-	RAMPAGE_only	4	4	12	0.397468	3.251629	chr1	212697248	212697403	SINE|MIR|MIRb	-	chr1	212686417	212698755	BATF3|ENST00000478275.1	-	212686417,212696960	212686979,212698755	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	109953855	109953910	109953892	-	RAMPAGE_only	13	15	47	1.556751	5.289760	chr10	109953667	109954091	LTR|ERVL-MaLR|MLT1J2	-	chr10	109946118	109957911	ADD3-AS1|ENST00000631276.2	-	109946118,109947195,109951843	109946295,109947276,109957911	0.553191
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	100829321	100829613	100829513	+	High_confidence	20	21	293	9.704855	7.030475	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.877133
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	46266515	46266516	46266515	-	High_confidence	5	5	8	0.264979	2.521641	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	16186271	16186277	16186271	-	High_confidence	15	17	25	0.828059	4.088779	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.760000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	57129029	57129056	57129038	+	High_confidence	3	3	10	0.331224	2.947703	chr16	57128916	57129133	LINE|L2|L2b	-	chr16	57129051	57147966	CPNE2|ENST00000566910.1	+	57129051,57134774,57137148,57146084,57147550	57129150,57134826,57137282,57146321,57147966	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	21472448	21472449	21472448	-	RAMPAGE_only	9	9	9	0.298101	3.169925	chr12	21472270	21472755	LTR|ERV1|MER66D	-	chr12	21469801	21501551	RECQL|ENST00000421138.6	-	21469801,21470968,21471427,21473550,21474840,21475467,21475675,21476910,21477802,21483375,21486478,21490198,21491518,21499554,21501169,21501412	21470346,21471098,21471647,21473642,21474979,21475585,21475824,21476992,21477969,21483574,21486585,21490378,21491716,21499615,21501215,21501551	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	158173024	158173025	158173024	-	High_confidence	138	138	179	5.928904	6.223652	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.787709
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	104907255	104907286	104907255	+	High_confidence	2	2	12	0.397468	3.418296	chr4	104907196	104907543	LTR|ERVL-MaLR|MLT1I	+	chr4	104907356	105116845	AC096577.1|ENST00000506148.5	+	104907356,104969244,105061226,105116828	104907460,104969347,105061474,105116845	0.583333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	137254947	137254959	137254947	-	RAMPAGE_only	2	2	7	0.231857	2.584963	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	121207793	121207794	121207793	+	High_confidence	7	7	11	0.364346	3.121928	chr9	121207755	121207923	SINE|Alu|AluJb	-	chr9	121207793	121265186	GSN|ENST00000434663.5	+	121207793,121209295,121210235,121210783,121231164,121265153	121207897,121209397,121210329,121210867,121231303,121265186	0.818182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	144106420	144106452	144106420	+	High_confidence	1	1	8	0.264979	2.807355	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	102449836	102449840	102449838	+	High_confidence	6	14	20	0.662447	3.721928	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	113117970	113117976	113117970	+	High_confidence	50	66	105	3.477849	5.551999	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.733333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	33394050	33394067	33394066	-	High_confidence	6	8	13	0.430591	3.546594	chr9	33394009	33394115	LINE|L2|L2b	+	chr9	33385505	33394176	AQP7|ENST00000447660.3	-	33385505,33386076,33386403,33393796	33385866,33386195,33386541,33394176	0.769231
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	85839704	85839705	85839704	+	High_confidence	6	6	6	0.198734	2.584963	chr8	85839524	85839864	LTR|ERVL-MaLR|THE1B	+	chr8	85839704	85908613	AC100801.1|ENST00000517368.1	+	85839704,85885934,85889578,85908312	85839785,85885994,85889653,85908613	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	79631273	79631329	79631302	+	High_confidence	241	242	896	29.677644	6.728852	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.962054
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	9858174	9858175	9858174	-	High_confidence	7	7	11	0.364346	3.027169	chr19	9858024	9858218	LINE|L2|L2b	+	chr19	9853717	9858168	OLFM2|NM_001304348.1	-	9853717,9856806,9857262,9857714,9858096	9854863,9856913,9857482,9857861,9858168	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	87530813	87530870	87530813	-	High_confidence	6	7	27	0.894304	4.053661	chr4	87530812	87530989	SINE|MIR|MIR1_Amn	-	chr4	87494439	87531049	SPARCL1|ENST00000512317.5	-	87494439,87494980,87499520,87529044,87530544,87530977	87494598,87495127,87499585,87529101,87530631,87531049	0.740741
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	121756510	121756525	121756510	+	High_confidence	7	7	16	0.529958	3.006239	chr2	121756508	121756618	LINE|L2|L2a	+	chr2	121756170	121765661	TSN|ENST00000409193.1	+	121756170,121757239,121758709,121761408,121763004,121765133	121756691,121757333,121758806,121761524,121763084,121765661	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	81192654	81192670	81192654	-	RAMPAGE_only	3	3	8	0.264979	2.807355	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	9567425	9567436	9567435	+	RAMPAGE_only	10	10	24	0.794937	3.360306	chr12	9567035	9567632	LTR|ERV1|HERVE-int	-	chr12	9557313	9576275	AC092821.1|ENST00000520314.2	+	9557313,9558368,9559174,9560109,9560816,9565091,9567489,9570765,9571460,9573002,9573465,9574846	9557580,9558452,9559348,9560191,9564325,9565303,9569202,9570892,9571573,9573093,9573534,9576275	0.958333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	106450815	106450822	106450821	+	High_confidence	8	9	13	0.430591	3.238901	chr9	106450433	106450967	LTR|ERVL-MaLR|MLT1G1	+	chr9	106450815	106604795	LINC01505|ENST00000425709.1	+	106450815,106558471,106588376,106603755	106450888,106558583,106588464,106604795	0.692308
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	49019922	49019944	49019922	-	High_confidence	1	1	7	0.231857	2.584963	chr15	49019767	49020200	LINE|L1|L1MD1	+	chr15	49016916	49019647	SECISBP2L|ENST00000557940.1	-	49016916,49017547,49019417	49017015,49017628,49019647	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	112452416	112452435	112452418	+	High_confidence	7	12	28	0.927426	4.178439	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112477203	IFRD1|NM_001197079.1	+	112452057,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112452511,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112477203	0.964286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	7906965	7906976	7906965	-	RAMPAGE_only	3	3	7	0.231857	2.807355	chr4	7906738	7907020	SINE|Alu|AluSq2	+	chr4	7758712	7939926	AFAP1|NM_198595.2	-	7758712,7768843,7772819,7774738,7778761,7786193,7793680,7800441,7809613,7816017,7819075,7838523,7843138,7855465,7868621,7871951,7939655	7763791,7769008,7773010,7774903,7778876,7786311,7793826,7800653,7809763,7816099,7819171,7838703,7843350,7855574,7868719,7872080,7939926	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	113625940	113625943	113625940	+	RAMPAGE_only	9	9	15	0.496836	3.640224	chr3	113625438	113625948	LINE|L1|L1MA3	-	chr3	113532370	113629575	SIDT1|NM_001322294.1	+	113532370,113566419,113567539,113576921,113580607,113581360,113583408,113584697,113585176,113593004,113601587,113603004,113603959,113604909,113607040,113608093,113608418,113611007,113612085,113615062,113616096,113619679,113623426,113623622,113626101,113627645	113533243,113566541,113567710,113576967,113580709,113581444,113583496,113584769,113585270,113593048,113601659,113603150,113604033,113604976,113607114,113608217,113608536,113611144,113612194,113615077,113616176,113619726,113623532,113623733,113626215,113629575	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	36584049	36584055	36584049	-	High_confidence	11	11	23	0.761815	3.880180	chr2	36584029	36584427	LTR|ERVL|LTR33	+	chr2	36555682	36584058	FEZ2|ENST00000464964.1	-	36555682,36558437,36578596,36581289,36583352,36584029	36555748,36558513,36578865,36581431,36583469,36584058	0.826087
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	77088097	77088109	77088107	+	High_confidence	7	10	18	0.596203	3.572469	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.555556
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	92536601	92536704	92536601	-	High_confidence	43	45	177	5.862660	6.461574	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.830508
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr18	9117553	9117565	9117556	+	RAMPAGE_only	4	4	13	0.430591	3.584963	chr18	9117554	9117678	SINE|MIR|MIR3	+	chr18	9119472	9134341	NDUFV2|ENST00000465096.5	+	9119472,9122512,9124873,9126830,9134185	9119590,9122681,9124996,9126907,9134341	0.846154
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	65441068	65441127	65441081	+	RAMPAGE_only	4	10	25	0.828059	4.053509	chr11	65440951	65441153	SINE|MIR|MIR	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.960000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	72363483	72363557	72363506	-	RAMPAGE_only	8	8	49	1.622996	5.112996	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72355954	72365197	MSTRG.23026.6	-	72355954,72356930,72359417,72360109,72360627,72364695	72356101,72357056,72359521,72360221,72363606,72365197	0.938776
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	106272308	106272387	106272360	-	RAMPAGE_only	8	9	50	1.656119	4.506328	chr7	106272347	106272479	SINE|MIR|MIR3	-	chr7	106248284	106284887	MSTRG.21388.1	-	106248284,106253016,106254363,106267880,106269153,106274945,106277022,106284827	106251193,106253151,106267551,106268600,106272658,106275049,106277179,106284887	0.960000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	52570261	52570324	52570323	+	RAMPAGE_only	6	8	27	0.894304	3.484684	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.814815
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	12514054	12514070	12514054	+	RAMPAGE_only	4	5	19	0.629325	4.037401	chr3	12513979	12514484	LINE|L2|L2b	-	chr3	12529778	12539288	TSEN2|ENST00000455118.5	+	12529778,12531569,12532661,12538801	12529873,12531659,12532773,12539288	0.526316
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	109053954	109053957	109053956	-	High_confidence	5	6	9	0.298101	3.000000	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	50130092	50130118	50130092	-	RAMPAGE_only	8	9	17	0.563080	3.750000	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.941176
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	242001549	242001569	242001568	-	RAMPAGE_only	3	3	9	0.298101	2.750000	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	241999083	MAP1LC3C|NM_001004343.2	-	241995489,241998513,241998775,241998950	241996385,241998620,241998831,241999083	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	108225407	108225441	108225440	+	High_confidence	41	41	73	2.417933	5.523671	chr11	108225380	108225464	LINE|CR1|L3	+	chr11	108224782	108231594	ATM|ENST00000638443.1	+	108224782,108227594,108227775,108229177,108231487	108224871,108227696,108227888,108230912,108231594	0.726027
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	122822384	122822420	122822408	+	RAMPAGE_only	6	6	28	0.927426	4.208966	chr8	122822318	122822453	SINE|MIR|MIR3	-	chr8	122781661	122974515	ZHX2|NM_014943.3	+	122781661,122863476,122951291,122973241	122781946,122863539,122954028,122974515	0.785714
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	129970960	129970982	129970960	-	High_confidence	5	5	9	0.298101	3.169925	chr8	129970879	129971079	SINE|MIR|MIR	+	chr8	129855582	129970990	FAM49B|ENST00000519142.5	-	129855582,129862228,129871374,129879388,129903311,129904498,129912469,129970942	129855747,129862334,129871496,129879471,129903350,129904585,129912515,129970990	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	159005961	159005962	159005961	+	High_confidence	21	21	24	0.794937	4.152391	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.916667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	122074112	122074126	122074112	-	RAMPAGE_only	2	2	7	0.231857	2.807355	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065943	122076083	LOX|ENST00000505593.5	-	122065943,122070052,122070493,122074012,122075403,122076017	122066749,122070168,122070589,122074169,122075541,122076083	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	125828183	125828184	125828183	+	RAMPAGE_only	5	5	7	0.231857	2.521641	chr6	125827884	125828197	LINE|L2|L2a	-	chr6	125815217	125874968	NCOA7|ENST00000419660.1	+	125815217,125855019,125874888	125815404,125855240,125874968	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	119217569	119217599	119217598	+	RAMPAGE_only	4	4	16	0.529958	3.323231	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212635	119294746	USP53|ENST00000274030.10	+	119212635,119214069,119217549,119235289,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119212873,119214222,119217673,119235411,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119294746	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	108225478	108225519	108225518	+	High_confidence	4	4	19	0.629325	4.058814	chr11	108225464	108225775	SINE|Alu|AluSg	-	chr11	108224782	108231594	ATM|ENST00000638443.1	+	108224782,108227594,108227775,108229177,108231487	108224871,108227696,108227888,108230912,108231594	0.684211
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	50172389	50172426	50172389	+	High_confidence	1	1	6	0.198734	2.584963	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	100831428	100831503	100831484	+	High_confidence	8	8	34	1.126161	4.538910	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100831480	100861026	MEG3|ENST00000555928.5	+	100831480,100834631,100836166,100845457,100860690	100831534,100834751,100836300,100845533,100861026	0.735294
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	19980362	19980363	19980362	-	High_confidence	21	25	25	0.828059	4.220176	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	0.920000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	151532158	151532185	151532158	-	High_confidence	2	2	8	0.264979	2.807355	chr2	151532092	151532225	SINE|Alu|AluSx4	-	chr2	151530640	151532163	NEB|ENST00000480784.1	-	151530640,151531791	151531101,151532163	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	8681599	8681600	8681599	+	High_confidence	41	41	51	1.689241	5.304682	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.529412
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	80524841	80524872	80524846	+	RAMPAGE_only	19	19	33	1.093038	4.538910	chr7	80524761	80524908	LTR|ERV1|LTR38B	+	chr7	80602149	80674409	CD36|ENST00000309881.11	+	80602149,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80602379,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.818182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	69237169	69237180	69237176	-	RAMPAGE_only	11	12	46	1.523629	4.507713	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69195248	69200898	FRMD4B|ENST00000462512.1	-	69195248,69196254,69196899,69198697,69200811	69195364,69196396,69197038,69198774,69200898	0.608696
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	46269576	46269624	46269609	-	High_confidence	31	35	95	3.146625	5.752631	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.821053
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	37690429	37690430	37690429	+	RAMPAGE_only	7	7	7	0.231857	2.521641	chr7	37690241	37690627	LTR|ERVL-MaLR|MSTB	+	chr7	37683871	37741374	GPR141|ENST00000447769.1	+	37683871,37685178,37729915,37740379	37683903,37685298,37730038,37741374	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	19386326	19386346	19386345	-	High_confidence	3	3	11	0.364346	3.121928	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.909091
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	19349980	19350023	19350008	+	RAMPAGE_only	4	4	23	0.761815	3.795089	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19355317	19359025	PDHA1|ENST00000481733.1	+	19355317,19355685,19357651,19358915	19355504,19355757,19357719,19359025	0.695652
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	12522265	12522274	12522265	+	RAMPAGE_only	7	7	13	0.430591	3.238901	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	98943562	98943578	98943575	+	High_confidence	27	30	89	2.947891	5.564045	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.988764
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	3536476	3536497	3536496	-	High_confidence	4	5	14	0.463713	3.238901	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.642857
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	27121396	27121435	27121396	-	RAMPAGE_only	2	2	14	0.463713	3.085055	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	187021850	187021896	187021850	+	High_confidence	41	82	121	4.007807	5.135436	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.876033
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	40418301	40418302	40418301	+	RAMPAGE_only	9	9	10	0.331224	2.503258	chr1	40417492	40419268	LINE|L1|L1MC4	+	chr1	40373696	40423324	MSTRG.653.3	+	40373696,40406735,40408652,40409756,40413015,40414158,40415271,40416175	40374223,40406869,40408738,40409835,40413102,40414240,40415381,40423324	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	105842371	105842400	105842387	+	High_confidence	3	3	9	0.298101	3.169925	chr11	105842025	105842553	LINE|L2|L2a	-	chr11	105842782	105903983	GRIA4|ENST00000527687.1	+	105842782,105862023,105887518,105898268,105903813	105842912,105862208,105887572,105898427,105903983	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	48683361	48683363	48683361	+	High_confidence	148	284	284	9.406753	5.781546	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.947183
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	43508424	43508443	43508424	+	RAMPAGE_only	3	3	6	0.198734	2.584963	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	31959160	31959180	31959178	+	High_confidence	8	14	31	1.026793	3.366218	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31981060	KIAA1551|ENST00000540924.5	+	31959407,31960776,31980877	31959491,31960871,31981060	0.548387
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	33129987	33130044	33130037	+	RAMPAGE_only	3	4	19	0.629325	3.826875	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	30493021	30493269	30493021	+	RAMPAGE_only	17	17	136	4.504642	6.080773	chr6	30493011	30493324	SINE|Alu|AluSc8	+	chr6	30489511	30494205	MSTRG.19690.3	+	30489511,30489725,30490239,30491136,30491536,30492540,30492748	30489595,30489995,30490515,30491412,30492436,30492583,30494205	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	71876840	71876854	71876853	+	RAMPAGE_only	3	3	13	0.430591	2.855389	chr12	71876794	71877109	SINE|Alu|AluSz	-	chr12	71839762	71894722	TBC1D15|ENST00000468049.2	+	71839762,71872069,71872928,71893221,71894685	71839811,71872168,71873003,71893324,71894722	0.538462
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	11223351	11223352	11223351	-	RAMPAGE_only	6	6	8	0.264979	3.000000	chr19	11223304	11223458	LTR|ERVL-MaLR|MLT1J2	+	chr19	11199496	11236497	DOCK6|ENST00000587656.5	-	11199496,11200307,11200715,11200908,11201888,11202393,11202583,11204080,11204199,11208685,11208910,11211775,11211992,11213175,11214274,11214552,11215386,11215800,11216913,11217230,11221850,11222108,11222734,11222992,11227336,11228939,11232184,11233202,11235597,11236345	11199539,11200469,11200822,11201052,11202125,11202483,11202709,11204095,11204331,11208829,11209103,11211876,11212151,11213328,11214409,11214649,11215471,11215927,11217096,11217391,11222020,11222248,11222905,11223106,11227477,11229035,11232289,11233366,11235759,11236497	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	67886517	67886518	67886517	+	High_confidence	4	4	7	0.231857	2.521641	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	46243230	46243246	46243236	-	RAMPAGE_only	3	4	14	0.463713	3.182006	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.928571
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	144063549	144063555	144063554	-	High_confidence	5	5	11	0.364346	3.121928	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144058886	144063965	OPLAH|ENST00000567871.2	-	144058886,144058979,144059598,144059861,144063699	144058896,144059079,144059790,144060085,144063965	0.727273
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	155555205	155555230	155555229	-	RAMPAGE_only	2	2	7	0.231857	2.584963	chr3	155555213	155555573	LTR|ERVL-MaLR|MLT1J2	+	chr3	155479881	155676039	PLCH1|ENST00000340059.11	-	155479881,155485355,155486146,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155675996	155483051,155485710,155486206,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155676039	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	39627120	39627121	39627120	-	High_confidence	463	473	504	16.693675	5.662978	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.954365
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	152101057	152101081	152101057	+	High_confidence	6	7	15	0.496836	3.640224	chr4	152100876	152101312	LINE|L2|L2a	-	chr4	152100817	152104720	LOC100996286|NR_121627.1	+	152100817,152101483,152103626	152101218,152101580,152104720	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	41359606	41359607	41359606	+	High_confidence	169	180	210	6.955698	5.300084	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.809524
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	37592325	37592351	37592350	-	RAMPAGE_only	3	3	10	0.331224	2.947703	chr17	37591051	37592936	LINE|L1|L1MD1	+	chr17	37584321	37585413	SYNRG|ENST00000612770.1	-	37584321,37585324	37584759,37585413	0.700000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	137201626	137201632	137201626	-	RAMPAGE_only	6	6	10	0.331224	2.947703	chr6	137201393	137201700	SINE|Alu|AluSc	+	chr6	137197496	137219449	MSTRG.20383.4	-	137197496,137200880,137204331,137206135,137206962,137219242	137198639,137203685,137204504,137206308,137207077,137219449	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	183590910	183590926	183590910	-	High_confidence	7	7	27	0.894304	4.392747	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.851852
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	109383417	109383498	109383462	-	High_confidence	4	4	34	1.126161	4.354852	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.941176
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	227534899	227534933	227534932	+	RAMPAGE_only	4	6	14	0.463713	3.238901	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.642857
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	108018843	108018875	108018843	+	RAMPAGE_only	5	5	27	0.894304	3.543465	chrX	108018632	108020157	LINE|L1|L1M2	-	chrX	108044969	108079184	VSIG1|ENST00000415430.7	+	108044969,108058037,108061427,108066935,108072676,108073249,108076076,108077047	108045179,108058201,108061535,108067134,108072832,108073369,108076218,108079184	0.814815
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	31587007	31587021	31587009	+	High_confidence	177	268	500	16.561185	5.961864	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.966000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	81170412	81170431	81170413	-	High_confidence	14	22	60	1.987342	5.194309	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.916667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	140641459	140641460	140641459	-	High_confidence	8	8	8	0.264979	2.750000	chr7	140641382	140641679	LINE|L2|L2b	-	chr7	140601924	140641485	DENND2A|ENST00000491728.5	-	140601924,140605704,140641405	140602542,140605806,140641485	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	24387453	24387473	24387472	-	High_confidence	13	15	37	1.225528	4.628108	chr8	24386908	24387825	LTR|ERVK|HERVK22-int	-	chr8	24295813	24387515	AC120193.1|ENST00000518988.5	-	24295813,24296153,24300884,24387160	24296057,24296250,24300929,24387515	0.810811
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	159428356	159428417	159428356	-	RAMPAGE_only	12	13	33	1.093038	4.718488	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.575758
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	15227307	15227308	15227307	-	RAMPAGE_only	9	9	9	0.298101	2.947703	chr12	15227116	15227490	LTR|ERVL-MaLR|MLT1B	-	chr12	15107781	15221477	RERG|NM_032918.2	-	15107781,15111343,15121062,15217428,15221194	15109517,15111417,15121119,15217603,15221477	0.555556
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	9645300	9645305	9645300	+	RAMPAGE_only	4	5	10	0.331224	2.947703	chr12	9645124	9645474	LTR|ERVL-MaLR|THE1B	+	chr12	9642867	9658415	LOC374443|NR_046449.2	+	9642867,9653682,9655872,9656920	9643103,9653808,9655979,9658415	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	64999248	64999269	64999268	-	High_confidence	3	4	7	0.231857	2.584963	chr7	64990915	64999343	LTR|ERV1|HERV3-int	-	chr7	64971775	64999428	MSTRG.20969.1	-	64971775,64981386,64981983,64989946,64999120	64979536,64981482,64982116,64993414,64999428	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	5726324	5726325	5726324	-	High_confidence	100	103	109	3.610338	5.372668	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.532110
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	45292805	45292832	45292825	+	High_confidence	3	4	15	0.496836	3.373557	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.933333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	102822458	102822463	102822458	-	RAMPAGE_only	49	58	110	3.643461	5.779348	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.709091
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	178679617	178679675	178679674	-	RAMPAGE_only	7	7	45	1.490507	4.880525	chr2	178679617	178679655	LINE|CR1|L3	-	chr2	178636751	178702520	TTN|ENST00000414766.5	-	178636751,178639698,178640047,178640540,178641240,178642236,178673632,178674313,178678124,178678413,178678746,178681660,178682696,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453	178636799,178639788,178640110,178640630,178641315,178642317,178673710,178674409,178678208,178678497,178678830,178681738,178682903,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702520	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	39032920	39032921	39032920	-	High_confidence	5	6	7	0.231857	2.807355	chr4	39032656	39032950	SINE|Alu|AluJr	+	chr4	38993734	39032922	TMEM156|ENST00000344606.6	-	38993734,38998723,39032225,39032641	38993998,38998909,39032443,39032922	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	6952982	6952983	6952982	-	RAMPAGE_only	6	6	6	0.198734	2.584963	chr8	6952819	6952939	LTR|ERVL|MER54B	-	chr8	6950725	6951599	DEFA8P|ENST00000457582.1	-	6950725,6951427	6950838,6951599	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	90467513	90467523	90467513	+	RAMPAGE_only	4	4	11	0.364346	3.459432	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.545455
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	55796687	55796688	55796687	-	High_confidence	8	9	9	0.298101	3.000000	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796688	LINC00520|ENST00000649892.1	-	55781136,55793367,55796602	55782581,55793456,55796688	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	180830482	180830483	180830482	+	High_confidence	65	65	65	2.152954	5.487677	chr5	180830359	180830506	LTR|ERVL-MaLR|MLT1D	+	chr5	180830956	180835726	LINC00847|NR_045679.1	+	180830956,180832672,180834311	180831229,180832860,180835726	0.784615
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	116390239	116390372	116390289	+	RAMPAGE_only	13	13	88	2.914769	5.075631	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.886364
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	44180908	44180952	44180950	+	High_confidence	5	9	31	1.026793	3.870014	chr22	44180997	44181117	LINE|L2|L2c	+	chr22	44180889	44208469	PARVG|NM_022141.6	+	44180889,44181741,44183317,44185807,44187775,44189113,44190550,44192048,44193800,44196154,44196346,44198620,44205756,44206316	44181185,44181917,44183408,44185872,44187878,44189254,44190666,44192104,44193823,44196213,44196415,44198722,44205829,44208469	0.838710
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	59839182	59839208	59839182	+	RAMPAGE_only	2	3	12	0.397468	3.277613	chr17	59838987	59839290	SINE|Alu|AluSq2	-	chr17	59837930	59842255	VMP1|ENST00000592790.1	+	59837930	59842255	0.916667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	95664807	95664817	95664816	+	RAMPAGE_only	5	5	12	0.397468	3.584963	chr14	95664736	95664975	LTR|ERVL-MaLR|MLT1H	-	chr14	95663255	95679833	TCL6|ENST00000352367.10	+	95663255,95668125,95669550,95670441,95671330,95679071	95665076,95668580,95669617,95670577,95671487,95679833	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	64993254	64993275	64993254	-	RAMPAGE_only	4	4	10	0.331224	2.725481	chr7	64990915	64999343	LTR|ERV1|HERV3-int	-	chr7	64971775	64999428	MSTRG.20969.1	-	64971775,64981386,64981983,64989946,64999120	64979536,64981482,64982116,64993414,64999428	0.700000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	107719695	107719701	107719695	-	High_confidence	453	477	743	24.609921	5.554426	chr11	107719646	107719884	LTR|Gypsy?|LTR88c	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.970390
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	48492596	48492656	48492622	-	RAMPAGE_only	14	17	54	1.788608	5.388298	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48488958	48533233	RCBTB2|ENST00000344532.7	-	48488958,48496190,48499620,48501741,48502723,48510628,48511769,48512015,48512728,48515204,48515585,48521897,48522307,48524658,48533027	48490251,48496321,48499760,48501868,48502914,48510771,48511877,48512174,48512895,48515355,48515741,48521962,48522403,48524757,48533233	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	74255037	74255057	74255056	-	RAMPAGE_only	3	3	8	0.264979	2.521641	chrX	74254333	74256146	LTR|ERV1|HUERS-P3b-int	+	chrX	74209975	74292529	MSTRG.23896.12	-	74209975,74218620,74280930,74281701,74292426	74218577,74280494,74281085,74281848,74292529	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	38612530	38612549	38612530	+	RAMPAGE_only	3	3	8	0.264979	2.807355	chrX	38612500	38614189	LINE|L1|HAL1	-	chrX	38561543	38688271	TSPAN7|ENST00000475216.5	+	38561543,38622902,38666120,38671375,38674220,38675704,38681203,38687598,38687938	38561627,38623033,38666309,38671450,38674316,38675860,38681287,38687674,38688271	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	24324975	24324976	24324975	+	High_confidence	10	13	14	0.463713	3.546594	chr8	24324695	24325068	LTR|ERVL-MaLR|MLT1H1	-	chr8	24325036	24332725	ADAM28|ENST00000521110.1	+	24325036,24326553,24329984,24331149,24332659	24325089,24326635,24330115,24331327,24332725	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	9674490	9674491	9674490	+	RAMPAGE_only	7	7	11	0.364346	2.663533	chr12	9672445	9674544	LINE|L1|L1PA10	-	chr12	9669727	9695129	CLEC2D|ENST00000479877.5	+	9669727,9680922,9687901,9692827,9694759	9669795,9681033,9688086,9693948,9695129	0.727273
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	2667195	2667196	2667195	+	High_confidence	6	6	9	0.298101	3.169925	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	2242922	2242923	2242922	+	High_confidence	11	11	11	0.364346	3.459432	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	65570465	65570466	65570465	+	High_confidence	5	6	7	0.231857	2.584963	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570451	65615757	LINC01515|ENST00000601979.5	+	65570451,65572934,65585484,65585664,65615635	65570545,65573056,65585567,65585802,65615757	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	60949433	60949449	60949443	-	RAMPAGE_only	14	17	57	1.887975	5.307355	chr1	60949259	60949438	SINE|MIR|MIRb	-	chr1	60940238	60970776	NFIA-AS2|ENST00000438559.5	-	60940238,60941179,60952510,60954321,60954484,60963565,60970547	60940631,60941252,60952684,60954370,60954602,60963804,60970776	0.596491
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	134549156	134549168	134549156	+	RAMPAGE_only	3	6	13	0.430591	3.418296	chr7	134549070	134551552	LTR|ERV1|HERVS71-int	+	chr7	134564787	134570474	AKR1B15|ENST00000467156.1	+	134564787,134568157,134569412	134565546,134568325,134570474	0.538462
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	37484780	37484788	37484787	-	High_confidence	6	7	11	0.364346	2.921928	chr13	37484620	37484966	LTR|ERVL-MaLR|THE1B	-	chr13	37481463	37484784	LINC01048|NR_125762.1	-	37481463,37484284,37484469,37484704	37481727,37484393,37484545,37484784	0.909091
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	140785902	140785915	140785914	-	RAMPAGE_only	4	4	10	0.331224	2.947703	chr2	140785621	140786177	LINE|L2|L2c	+	chr2	140231422	142131701	LRP1B|ENST00000389484.7	-	140231422,140234785,140238151,140239441,140247085,140270241,140274423,140297807,140314934,140321962,140323892,140325761,140334452,140335614,140350796,140352952,140356341,140357978,140358820,140364660,140370709,140371178,140373007,140378179,140385892,140442503,140444329,140444562,140450567,140456454,140457462,140475137,140485342,140487616,140492607,140495564,140501686,140502962,140506795,140509927,140514652,140516888,140525843,140526236,140534020,140536580,140540972,140541778,140598630,140601449,140700249,140701720,140702140,140702426,140715972,140716681,140769212,140770880,140776097,140813656,140839990,140840917,140850101,140851651,140867589,140868098,140883816,140886137,140902919,140907876,140922964,140950234,140951859,140982159,140989531,140993994,141005334,141013555,141015695,141019921,141048985,141055115,141058882,141062050,141188420,141229182,141247225,141254521,141480395,141810278,142130647	140233326,140234884,140238296,140239532,140247162,140270346,140274598,140297969,140315099,140322088,140324066,140325878,140334559,140335838,140351038,140353072,140356476,140358116,140358946,140364783,140370842,140371285,140373137,140378286,140386009,140442623,140444449,140444679,140450661,140456603,140457651,140475337,140485524,140487739,140492693,140495748,140501874,140503103,140506918,140510056,140514772,140517011,140525993,140526350,140534140,140536709,140541098,140541971,140598835,140601639,140700621,140701845,140702292,140702553,140716102,140716816,140769344,140771006,140776238,140813806,140840085,140841092,140850329,140851783,140867834,140868263,140884021,140886335,140903165,140908077,140923147,140950402,140951940,140982276,140989657,140994135,141005457,141013745,141015915,141020102,141049222,141055259,141059054,141062273,141188583,141229440,141247354,141254641,141480533,141810401,142131701	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	81995552	81995567	81995552	-	High_confidence	2	4	8	0.264979	2.750000	chr15	81995166	82000000	LINE|L1|L1HS	+	chr15	81953302	81995666	AC025219.1|ENST00000559299.1	-	81953302,81954388,81995426	81953507,81954469,81995666	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	70753181	70753182	70753181	-	RAMPAGE_only	6	6	6	0.198734	2.584963	chr15	70753130	70753317	LINE|L1|L1M5	+	chr15	70654553	70763511	UACA|NM_018003.2	-	70654553,70660150,70664661,70666723,70671038,70671964,70676492,70677107,70678098,70679607,70682757,70684264,70687539,70687749,70690453,70691298,70695016,70699526,70763329	70657127,70660216,70664814,70669462,70671091,70672001,70676591,70677140,70678206,70679676,70682795,70684446,70687646,70687820,70690511,70691363,70695105,70699660,70763511	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	112452380	112452386	112452385	+	High_confidence	6	6	12	0.397468	3.277613	chr7	112452155	112452428	SINE|Alu|AluJr	-	chr7	112452057	112477203	IFRD1|NM_001197079.1	+	112452057,112455762,112456001,112456913,112458860,112461865,112462000,112462269,112467980,112472218,112472765,112475429	112452511,112455867,112456086,112457038,112459018,112461916,112462179,112462378,112468115,112472347,112472861,112477203	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	21818159	21818192	21818159	-	RAMPAGE_only	3	3	13	0.430591	3.418296	chr12	21817882	21818136	LINE|L1|L1PA8A	-	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	0.769231
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	53427241	53427242	53427241	+	RAMPAGE_only	4	4	7	0.231857	2.521641	chr12	53427040	53427257	LINE|L2|L2a	-	chr12	53423934	53431473	AMHR2|ENST00000379791.7	+	53423934,53424287,53424708,53425164,53425454,53425688,53428895,53429452,53431176	53423983,53424470,53424900,53425242,53425573,53425919,53429010,53429625,53431473	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	43762659	43762675	43762669	+	RAMPAGE_only	9	9	43	1.424262	4.440244	chr7	43762606	43762916	SINE|Alu|AluSc	-	chr7	43758686	43807342	BLVRA|ENST00000402924.5	+	43758686,43760016,43771137,43787903,43791248,43792714,43800464,43803675,43806976	43758734,43760110,43771170,43788025,43791368,43792812,43800572,43803847,43807342	0.953488
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	10282521	10282533	10282521	+	RAMPAGE_only	2	2	6	0.198734	2.584963	chr1	10282562	10282741	LINE|CR1|L3	+	chr1	10232328	10381596	KIF1B|ENST00000620295.2	+	10232328,10256246,10258492,10261904,10267379,10268151,10271501,10272240,10273013,10275427,10276320,10277985,10282321,10291081,10292046,10295085,10295659,10296581,10296896,10297173,10320042,10321708,10323883,10324757,10326110,10334519,10336656,10337073,10337370,10339768,10342049,10343231,10345844,10347760,10348648,10352630,10360928,10361691,10363282,10365099,10365408,10368466,10371140,10374315,10374853,10375254,10378338	10232434,10256323,10258672,10261970,10267558,10268263,10271579,10272306,10273031,10275503,10276399,10278128,10282533,10291161,10292122,10295165,10295766,10296665,10297077,10297246,10320136,10321857,10324062,10324895,10326359,10334638,10336742,10337203,10337533,10339859,10342168,10343287,10345953,10347827,10348733,10352736,10361043,10361825,10363344,10365245,10365648,10368538,10371262,10374465,10375046,10375373,10381596	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	130894334	130894345	130894344	-	RAMPAGE_only	7	8	12	0.397468	3.277613	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	20423690	20423704	20423703	-	RAMPAGE_only	13	23	51	1.689241	3.955729	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.843137
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	103181328	103181329	103181328	-	RAMPAGE_only	30	30	35	1.159283	4.620152	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.542857
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	134485387	134485471	134485443	-	High_confidence	31	31	175	5.796415	6.179151	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.971429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	6866547	6866553	6866552	-	High_confidence	3	3	8	0.264979	2.807355	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	8310240	8310257	8310240	+	High_confidence	7	8	21	0.695570	3.921928	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	0.809524
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	133089677	133089678	133089677	+	RAMPAGE_only	12	12	13	0.430591	3.188722	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.923077
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	2144371	2144393	2144392	-	RAMPAGE_only	4	4	16	0.529958	3.506891	chr6	2144319	2144762	LTR|ERVL|MER74B	-	chr6	1623799	2175991	GMDS|NM_001253846.1	-	1623799,1624471,1726415,1742467,1930102,1959866,1960773,2115770,2117468,2124686,2175931	1624231,1624540,1726512,1742586,1930230,1959971,1960966,2115880,2117556,2124731,2175991	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	43143091	43143114	43143113	-	RAMPAGE_only	32	37	95	3.146625	5.948597	chr2	43142863	43143298	LTR|ERVL-MaLR|MLT1N2	-	chr2	43097745	43102691	LINC02580|ENST00000434020.1	-	43097745,43102034	43098040,43102691	0.578947
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	141333565	141333606	141333575	+	RAMPAGE_only	8	9	45	1.490507	4.661263	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141636595	141733987	IL15|NM_172175.2	+	141636595,141656185,141688821,141719377,141720468,141721058,141721923,141727939,141729846,141732737	141636748,141656307,141689035,141719476,141720566,141721177,141722008,141727984,141729984,141733987	0.511111
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	97366637	97366642	97366637	+	High_confidence	5	5	9	0.298101	2.500000	chr4	97366483	97367057	LTR|ERVL-MaLR|MLT1E1A	+	chr4	97366925	97490164	STPG2-AS1|NR_102713.1	+	97366925,97439353,97441409,97463544,97489773,97489995	97366988,97439421,97441559,97463592,97489812,97490164	0.555556
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	145480753	145480777	145480776	+	High_confidence	2	2	6	0.198734	2.584963	chr4	145480763	145480842	LINE|L2|L2a	-	chr4	145481193	145514932	SMAD1|ENST00000514778.1	+	145481193,145514437	145481314,145514932	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	91179462	91179526	91179462	-	High_confidence	2325	2373	12193	403.861061	7.625374	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.913803
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	95716909	95716910	95716909	+	High_confidence	9	9	9	0.298101	2.725481	chr5	95716714	95717048	LTR|ERVL-MaLR|THE1B	+	chr5	95717632	95756093	RHOBTB3|ENST00000504949.1	+	95717632,95731858,95736888,95748332,95752238,95755395	95717765,95732084,95737075,95748487,95752350,95756093	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	212697248	212697251	212697248	-	RAMPAGE_only	7	8	15	0.496836	2.842371	chr1	212697248	212697403	SINE|MIR|MIRb	-	chr1	212686417	212698755	BATF3|ENST00000478275.1	-	212686417,212696960	212686979,212698755	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	107719823	107719824	107719823	-	High_confidence	8	8	9	0.298101	3.000000	chr11	107719646	107719884	LTR|Gypsy?|LTR88c	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	134549109	134549114	134549113	+	RAMPAGE_only	8	8	19	0.629325	4.247928	chr7	134549070	134551552	LTR|ERV1|HERVS71-int	+	chr7	134564787	134570474	AKR1B15|ENST00000467156.1	+	134564787,134568157,134569412	134565546,134568325,134570474	0.684211
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	174874418	174874458	174874418	+	RAMPAGE_only	41	44	190	6.293250	6.828158	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174877439	174995301	RABGAP1L|ENST00000392064.6	+	174877439,174957456,174969276,174976077,174978806,174982833,174988640,174989848	174877605,174957549,174969387,174976182,174978890,174982905,174988838,174995301	0.526316
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	227142956	227142978	227142956	-	RAMPAGE_only	9	9	15	0.496836	3.182006	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317714	CDC42BPA|ENST00000334218.9	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227059372,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227112670,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227059411,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227112913,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317714	0.933333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	27579390	27579393	27579392	+	RAMPAGE_only	7	10	13	0.430591	3.188722	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.692308
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	106262650	106262699	106262650	-	RAMPAGE_only	3	3	18	0.596203	3.572469	chr7	106262628	106262858	SINE|MIR|MIRb	+	chr7	106248284	106284887	MSTRG.21388.1	-	106248284,106253016,106254363,106267880,106269153,106274945,106277022,106284827	106251193,106253151,106267551,106268600,106272658,106275049,106277179,106284887	0.944444
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	88614003	88614029	88614003	-	RAMPAGE_only	16	16	48	1.589874	4.490418	chr2	88613982	88615337	LINE|L2|L2a	+	chr2	88570919	88627576	MSTRG.13366.5	-	88570919,88574665,88576553,88579517,88583429,88585840,88587981,88588760,88590442,88590817,88593912,88626966	88571041,88575446,88576703,88579640,88583542,88586061,88588104,88588901,88590605,88593405,88613853,88627576	0.979167
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	27920133	27920151	27920138	-	High_confidence	6	6	13	0.430591	3.546594	chr22	27919974	27920411	LINE|L2|L2b	-	chr22	27860195	27920134	PITPNB|ENST00000415296.5	-	27860195,27873737,27894554,27896551,27897129,27897800,27910963,27914316,27919810	27860241,27873815,27894638,27896626,27897137,27897892,27911109,27914347,27920134	0.538462
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	31233173	31233212	31233211	+	High_confidence	3	3	12	0.397468	3.084963	chr17	31233237	31233291	LINE|L2|L2a	+	chr17	31233029	31261794	NF1|ENST00000479614.1	+	31233029,31235610,31235917,31248983,31257686,31258343,31259031,31260368,31261710	31233213,31235772,31236021,31249119,31257726,31258502,31259129,31260515,31261794	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	27579351	27579369	27579368	+	RAMPAGE_only	5	5	10	0.331224	2.721928	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	75248150	75248151	75248150	-	High_confidence	13	14	15	0.496836	3.378783	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.733333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	11728439	11728443	11728439	-	RAMPAGE_only	5	5	10	0.331224	2.725481	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713674	11736714	ADTRP|ENST00000514824.5	-	11713674,11717308,11723348,11735567,11736003	11714512,11717414,11723500,11735683,11736714	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	7502477	7502520	7502519	-	High_confidence	3	5	13	0.430591	3.251629	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.923077
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	170226587	170226607	170226587	+	High_confidence	27	30	54	1.788608	5.383114	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.518519
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	64226142	64226180	64226158	-	High_confidence	151	156	743	24.609921	7.368291	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.955585
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	32403108	32403116	32403108	-	RAMPAGE_only	7	7	15	0.496836	3.324863	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.933333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr18	7946878	7946898	7946878	+	High_confidence	10	10	26	0.861182	4.286790	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.730769
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	58455289	58455303	58455289	-	RAMPAGE_only	3	3	8	0.264979	2.521641	chr5	58455099	58455251	DNA|hAT-Charlie|MER5A	-	chr5	58453981	58460139	PLK2|NM_006622.3	-	58453981,58454910,58455284,58455538,58456025,58456491,58456944,58457180,58457487,58458083,58458398,58458724,58458984,58459689	58454774,58455021,58455414,58455779,58456155,58456589,58457092,58457379,58457583,58458171,58458528,58458841,58459092,58460139	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	77127964	77127965	77127964	+	High_confidence	6	7	8	0.264979	2.750000	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77194757	MSTRG.10944.25	+	77127872,77142645,77143566,77190802,77191187,77193420,77194676	77128087,77142750,77143659,77190952,77191312,77193549,77194757	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	31587201	31587275	31587274	+	High_confidence	59	63	281	9.307386	5.344484	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	0.583630
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	100593594	100593612	100593611	+	RAMPAGE_only	3	3	8	0.264979	2.807355	chrX	100593595	100593649	LINE|CR1|L3	+	chrX	100584801	100599885	TNMD|ENST00000373031.4	+	100584801,100585230,100593894,100594260,100597503,100599015,100599507	100585066,100585362,100594035,100594362,100597657,100599182,100599885	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	35294429	35294443	35294429	+	RAMPAGE_only	3	4	10	0.331224	2.641604	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	107266356	107266357	107266356	+	RAMPAGE_only	25	25	27	0.894304	3.863465	chr4	107265946	107266484	LTR|ERVL|MLT2F	+	chr4	107258699	107301870	AC104663.1|ENST00000508555.1	+	107258699,107301488	107258874,107301870	0.925926
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	20676160	20676162	20676161	-	High_confidence	13	17	21	0.695570	4.221928	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.904762
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	50131093	50131140	50131093	-	High_confidence	15	15	77	2.550423	5.261799	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	11728391	11728404	11728391	-	High_confidence	4	6	15	0.496836	3.182006	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.866667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	4143196	4143215	4143199	+	High_confidence	75	78	206	6.823208	5.916829	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.975728
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	229232042	229232054	229232053	-	High_confidence	13	13	23	0.761815	4.152391	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.826087
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	7913233	7913254	7913248	-	RAMPAGE_only	11	13	28	0.927426	4.182006	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.535714
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	98988460	98988461	98988460	-	RAMPAGE_only	10	11	11	0.364346	2.921928	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98793486	98978084	DOCK9|NM_001130048.1	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,98977783	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,98978084	0.909091
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	95042538	95042552	95042538	-	RAMPAGE_only	9	10	31	1.026793	4.215061	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.645161
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	49448222	49448223	49448222	-	High_confidence	4	4	7	0.231857	2.584963	chr19	49448212	49448629	LINE|L2|L2b	+	chr19	49446298	49448062	PIH1D1|ENST00000594845.5	-	49446298,49446550,49447023,49447826,49448000	49446423,49446694,49447099,49447908,49448062	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	35188521	35188527	35188526	+	RAMPAGE_only	4	4	10	0.331224	2.947703	chr17	35188467	35188692	SINE|Alu|AluJo	-	chr17	35148263	35189345	UNC45B|NM_001308281.1	+	35148263,35148972,35150047,35152892,35154573,35155295,35159374,35163994,35168060,35171321,35174241,35175967,35177016,35177494,35180558,35183426,35186298	35148431,35149009,35150223,35152982,35154741,35155464,35159545,35164166,35168361,35171462,35174369,35176034,35177130,35177610,35180676,35183582,35189345	0.700000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	2975621	2975682	2975621	+	RAMPAGE_only	5	5	31	1.026793	4.696132	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.903226
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	38948236	38948246	38948245	-	High_confidence	10	10	21	0.695570	4.037401	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	0.761905
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	84836072	84836080	84836072	+	RAMPAGE_only	12	14	23	0.761815	4.011365	chr15	84835841	84837447	LINE|L2|L2a	-	chr15	84816679	84873482	ALPK3|NM_020778.4	+	84816679,84823329,84827483,84838979,84839701,84856391,84859242,84859775,84860036,84862634,84863551,84864441,84867316,84868110	84817595,84823368,84827605,84839097,84840932,84858555,84859390,84859903,84860072,84862915,84863640,84864665,84867365,84873482	0.695652
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	133130662	133130684	133130670	-	RAMPAGE_only	6	7	21	0.695570	3.880180	chr2	133130556	133130812	SINE|tRNA-RTE|MamSINE1	+	chr2	132671798	133568460	NCKAP5|NM_207481.3	-	132671798,132725626,132728815,132731736,132773815,132790022,132796627,132860491,132868935,132878847,132963719,132994151,133129977,133213715,133303036,133517457,133559049,133568215	132673305,132725759,132728952,132732051,132773894,132790205,132796729,132860611,132868974,132878916,132963869,132994239,133130111,133213779,133303110,133517587,133559117,133568460	0.904762
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	19487898	19487901	19487900	-	High_confidence	33	61	76	2.517300	4.654353	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.802632
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	188397636	188397683	188397666	+	RAMPAGE_only	6	6	33	1.093038	4.413716	chr3	188397610	188397913	SINE|Alu|AluSz	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	127451076	127451105	127451104	-	High_confidence	5	5	15	0.496836	3.235926	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.866667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	28165292	28165304	28165303	+	RAMPAGE_only	9	10	17	0.563080	3.381580	chr2	28165020	28165437	LINE|L2|L2b	-	chr2	27890792	28338901	BABAM2|ENST00000361704.6	+	27890792,27894532,27929831,27987992,28025225,28045724,28129270,28237201,28241322,28244779,28298337,28310081,28338449	27890842,27894684,27929908,27988087,28025420,28045799,28129380,28237301,28241393,28244862,28298491,28310153,28338901	0.941176
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	138557286	138557287	138557286	-	High_confidence	4	4	7	0.231857	2.521641	chr5	138557194	138557264	SINE|Alu|AluSx3	-	chr5	138555826	138557891	HSPA9|ENST00000524109.1	-	138555826,138556451,138556773,138557868	138556114,138556592,138557496,138557891	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	31387991	31387992	31387991	+	RAMPAGE_only	7	7	9	0.298101	2.750000	chr15	31387992	31388093	LINE|CR1|L3b	+	chr15	31393574	31435665	KLF13|ENST00000558225.1	+	31393574,31435369	31393691,31435665	0.555556
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	145553557	145553583	145553577	+	RAMPAGE_only	6	8	24	0.794937	4.251629	chr4	145553310	145553641	DNA|hAT-Charlie|MER1B	-	chr4	145544177	145558079	SMAD1|ENST00000511125.1	+	145544177,145553783,145557790	145546924,145554040,145558079	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	45000457	45000504	45000503	+	High_confidence	11	11	31	1.026793	4.548394	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.967742
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	32684271	32684272	32684271	-	High_confidence	8	8	8	0.264979	2.750000	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32653863	32684284	MYO1D|ENST00000582217.1	-	32653863,32654476,32659114,32684174	32653947,32654621,32659338,32684284	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	6702632	6702647	6702632	-	RAMPAGE_only	3	3	10	0.331224	2.921928	chr19	6702615	6702750	SINE|Alu|AluSz	+	chr19	6696613	6697715	C3|ENST00000594005.1	-	6696613,6697343	6696659,6697715	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	2727243	2727264	2727243	+	High_confidence	2	2	10	0.331224	3.321928	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	29077448	29077501	29077486	+	High_confidence	8	8	37	1.225528	4.836592	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077470	29109791	MAP3K7CL|NM_001286623.1	+	29077470,29080551,29085812,29091500,29091667,29092438,29109039	29077713,29080708,29085917,29091576,29091761,29092581,29109791	0.621622
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	95717623	95717657	95717623	+	High_confidence	22	22	58	1.921097	3.636268	chr5	95717605	95717747	LTR|ERVL|LTR33	-	chr5	95717632	95756093	RHOBTB3|ENST00000504949.1	+	95717632,95731858,95736888,95748332,95752238,95755395	95717765,95732084,95737075,95748487,95752350,95756093	0.913793
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	196715603	196715621	196715620	+	RAMPAGE_only	3	3	8	0.264979	2.750000	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	123061128	123061257	123061256	-	High_confidence	20	23	109	3.610338	5.703509	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.954128
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	18063185	18063216	18063197	-	High_confidence	9	10	34	1.126161	4.306075	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.970588
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	74230122	74230192	74230122	-	RAMPAGE_only	5	5	27	0.894304	4.315824	chrX	74228865	74230951	LINE|L1|L1MB7	+	chrX	74209975	74292529	MSTRG.23896.12	-	74209975,74218620,74280930,74281701,74292426	74218577,74280494,74281085,74281848,74292529	0.962963
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	3905218	3905232	3905231	+	High_confidence	32	33	79	2.616667	5.588220	chr12	3904972	3905441	LTR|ERVL-MaLR|MLT1H2	+	chr12	3905219	3910270	AC005842.1|ENST00000545163.1	+	3905219,3909883	3905381,3910270	0.797468
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	102370760	102370793	102370792	+	RAMPAGE_only	4	4	12	0.397468	3.418296	chr14	102370462	102370850	LINE|L2|L2b	-	chr14	102363078	102465671	TECPR2|ENST00000558678.1	+	102363078,102376649,102407337,102408487,102414635,102424978,102428249,102431795,102434234,102438021,102440435,102443646,102445805,102449628,102450559,102452393,102465140	102363116,102376940,102407466,102408619,102414793,102425291,102428382,102432128,102435211,102438205,102440609,102443827,102445947,102449869,102450649,102452627,102465671	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	29667518	29667577	29667531	-	RAMPAGE_only	7	11	36	1.192405	4.650572	chr17	29667384	29667678	DNA|hAT-Charlie|MER1B	+	chr17	29630799	29761417	SSH2|ENST00000649863.1	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677738,29684684,29695523,29703062,29761417	0.944444
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	150153226	150153227	150153226	+	RAMPAGE_only	27	28	31	1.026793	4.047299	chr5	150153259	150153413	LINE|CR1|L3b	+	chr5	150166780	150184558	CDX1|NM_001804.2	+	150166780,150182767,150183473	150167321,150182913,150184558	0.935484
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	20832892	20832916	20832892	-	RAMPAGE_only	2	2	9	0.298101	2.750000	chr13	20832849	20832905	SINE|tRNA|LFSINE_Vert	-	chr13	20777328	20902774	XPO4|NM_022459.4	-	20777328,20786964,20787480,20788485,20790461,20796075,20796763,20799164,20800155,20800830,20807456,20808435,20809082,20809790,20821703,20822131,20827066,20842894,20843769,20855626,20862716,20868595,20902669	20783919,20787057,20787598,20788616,20790580,20796256,20797057,20799339,20800325,20800990,20807634,20808581,20809225,20809967,20821878,20822289,20827179,20843048,20843886,20855765,20862858,20868701,20902774	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	53368101	53368143	53368122	-	High_confidence	6	6	24	0.794937	4.004886	chr1	53367866	53368194	LINE|L2|L2b	+	chr1	53366667	53368245	AC119428.2|ENST00000449958.1	-	53366667,53368005	53367277,53368245	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	106278172	106278192	106278172	+	High_confidence	3	3	6	0.198734	2.584963	chr9	106277947	106278267	LINE|RTE-X|L4_C_Mam	+	chr9	106278391	106604795	LINC01505|ENST00000435485.5	+	106278391,106279100,106499486,106500356,106558471,106588376,106603755	106278472,106279190,106499612,106500505,106558583,106588464,106604795	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	77532106	77532107	77532106	+	High_confidence	8	9	9	0.298101	2.750000	chr1	77531016	77532288	LTR|ERV1|LTR12C	-	chr1	77532106	77558731	AK5|ENST00000478255.1	+	77532106,77535846,77558601	77532340,77536038,77558731	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	180870516	180870519	180870518	-	High_confidence	13	20	25	0.828059	3.939471	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180707588	180870178	LOC101928882|NR_109986.1	-	180707588,180711192,180711309,180725514,180733478,180734486,180737492,180747879,180748245,180751347,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180733682,180734606,180737814,180748043,180748319,180751410,180782124,180810470,180847624,180870178	0.840000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	6208681	6208682	6208681	-	High_confidence	146	146	146	4.835866	3.803470	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.986301
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	28048446	28048447	28048446	+	High_confidence	22	24	25	0.828059	3.605389	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.960000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	183045407	183045449	183045407	-	RAMPAGE_only	2	2	13	0.430591	3.084963	chr3	183045092	183045379	SINE|Alu|AluSx1	-	chr3	183022468	183037355	MCCC1|ENST00000489909.1	-	183022468,183025754,183029092,183033990,183037217	183022554,183025804,183029189,183034077,183037355	0.538462
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	2726956	2726963	2726962	+	High_confidence	15	15	49	1.622996	4.764461	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.795918
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	125828203	125828228	125828227	+	RAMPAGE_only	2	3	7	0.231857	2.584963	chr6	125828208	125828418	LINE|L2|L2-3_Crp	-	chr6	125815217	125855590	NCOA7|ENST00000487635.1	+	125815217,125855019	125815404,125855590	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	129488756	129488891	129488856	+	High_confidence	48	48	210	6.955698	4.946962	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.976190
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	31121337	31121347	31121337	-	RAMPAGE_only	23	26	39	1.291772	4.663231	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.871795
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	65442818	65442867	65442861	+	RAMPAGE_only	7	7	32	1.059916	4.226410	chr11	65442603	65442894	SINE|Alu|AluSx4	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	2757786	2757811	2757810	+	High_confidence	5	5	24	0.794937	4.386842	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.916667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	65382795	65382813	65382795	-	High_confidence	2	2	7	0.231857	2.584963	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375191	65382674	SLC25A45|NM_182556.3	-	65375191,65376817,65379375,65379866,65380131,65381914,65382485	65376675,65377076,65379561,65379938,65380175,65381969,65382674	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	74202186	74202230	74202199	-	RAMPAGE_only	4	5	14	0.463713	3.182006	chrX	74202190	74202495	SINE|Alu|AluSq	+	chrX	74200228	74242148	FTX|ENST00000641360.1	-	74200228,74241932	74203909,74242148	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	44277228	44277234	44277228	-	RAMPAGE_only	162	230	389	12.884602	5.281509	chr1	44276448	44277739	LINE|L2|L2b	+	chr1	44221069	44278435	MSTRG.698.1	-	44221069,44247938,44277178	44221640,44248038,44278435	0.994859
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	57426754	57426755	57426754	-	High_confidence	5	5	8	0.264979	2.521641	chr11	57426722	57426811	SINE|MIR|MIRb	-	chr11	57407405	57426752	SLC43A3|ENST00000529554.5	-	57407405,57409174,57409934,57414614,57414932,57416572,57417747,57420971,57421296,57423981,57425540,57425988,57426587	57407896,57409298,57410121,57414731,57415106,57416670,57417887,57421064,57421373,57424028,57425670,57426352,57426752	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	7732792	7732793	7732792	-	High_confidence	26	30	30	0.993671	4.323231	chr19	7732758	7732907	SINE|Alu|FLAM_C	+	chr19	7728956	7732171	CLEC4G|NM_001244856.1	-	7728956,7729820,7730018,7730350,7730754,7731025,7731265,7731660,7732083	7729504,7729936,7730167,7730440,7730859,7731088,7731319,7731771,7732171	0.966667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	111097312	111097329	111097319	-	High_confidence	6	6	15	0.496836	3.664498	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.866667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	15676598	15676599	15676598	+	RAMPAGE_only	6	6	8	0.264979	2.500000	chr7	15676588	15676870	SINE|Alu|AluSz	+	chr7	15667946	15681980	AC005550.2|ENST00000451240.1	+	15667946,15676019,15677462,15678913	15668296,15676160,15677647,15681980	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	70590308	70590329	70590328	+	RAMPAGE_only	30	31	81	2.682912	5.151319	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.604938
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	129698737	129698760	129698737	+	RAMPAGE_only	10	11	47	1.556751	4.404821	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	0.914894
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	26551825	26551839	26551838	+	High_confidence	3	3	6	0.198734	2.584963	chr7	26551639	26551841	SINE|MIR|MIR	-	chr7	26551838	26555114	AC004947.1|ENST00000457000.1	+	26551838,26554808,26555021	26552210,26554919,26555114	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	84836033	84836034	84836033	+	RAMPAGE_only	13	13	16	0.529958	3.773557	chr15	84835841	84837447	LINE|L2|L2a	-	chr15	84816679	84873482	ALPK3|NM_020778.4	+	84816679,84823329,84827483,84838979,84839701,84856391,84859242,84859775,84860036,84862634,84863551,84864441,84867316,84868110	84817595,84823368,84827605,84839097,84840932,84858555,84859390,84859903,84860072,84862915,84863640,84864665,84867365,84873482	0.562500
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	1655443	1655462	1655443	-	RAMPAGE_only	2	3	14	0.463713	3.807355	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	51221891	51221910	51221909	-	RAMPAGE_only	8	8	13	0.430591	3.546594	chr2	51221760	51222092	LTR|ERV1|LTR43B	-	chr2	51028373	51082864	NRXN1|ENST00000635310.1	-	51028373,51072767,51081389,51082691	51029194,51072903,51081505,51082864	0.615385
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	3112860	3112864	3112863	+	RAMPAGE_only	6	7	15	0.496836	3.521641	chr4	3112259	3112985	LINE|L1|L1ME3A	-	chr4	3115328	3121712	HTT|ENST00000506137.1	+	3115328,3116084,3121227	3115445,3116263,3121712	0.933333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	40509494	40509498	40509494	+	RAMPAGE_only	13	13	24	0.794937	4.229871	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	14776966	14776986	14776985	-	RAMPAGE_only	3	3	8	0.264979	2.521641	chr17	14776695	14777201	LTR|ERVL-MaLR|MLT1F	+	chr17	14767582	14780203	AC005863.1|ENST00000379640.1	-	14767582,14779869	14770246,14780203	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	287314	287315	287314	+	High_confidence	17	17	20	0.662447	4.037401	chr11	287048	287379	LINE|L2|L2a	-	chr11	288037	288987	AC136475.3|ENST00000534742.1	+	288037,288949	288811,288987	0.950000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	87040212	87040223	87040222	-	RAMPAGE_only	10	10	22	0.728692	4.011365	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.818182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	114394412	114394413	114394412	-	High_confidence	4	5	7	0.231857	2.807355	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	65432869	65432939	65432869	+	RAMPAGE_only	3	3	37	1.225528	4.648510	chr11	65432693	65433229	LINE|L1|L1PB3	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	30971746	30971770	30971746	+	High_confidence	3	3	10	0.331224	3.169925	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	99410031	99410052	99410031	+	RAMPAGE_only	5	8	27	0.894304	4.026987	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.925926
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	112219334	112219335	112219334	+	RAMPAGE_only	10	10	10	0.331224	3.321928	chr5	112219140	112219503	LTR|ERVL-MaLR|THE1D	+	chr5	112228282	112257309	AC104126.1|ENST00000504004.1	+	112228282,112249597,112250614,112256862	112228352,112249632,112250773,112257309	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	9965312	9965321	9965320	+	RAMPAGE_only	35	36	53	1.755486	5.026987	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971504	9995694	CLEC12A|ENST00000449959.6	+	9971504,9978965,9980581,9982019,9995017	9971687,9979524,9980733,9982129,9995694	0.849057
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	11795569	11795570	11795569	+	High_confidence	12	12	12	0.397468	3.251629	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.916667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	38468481	38468504	38468484	-	High_confidence	19	19	44	1.457384	5.054172	chr5	38468426	38468568	SINE|MIR|MIRc	-	chr5	38466162	38468339	AC010457.1|ENST00000510137.1	-	38466162,38468238	38466398,38468339	0.704545
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	23243634	23243635	23243634	+	High_confidence	136	136	143	4.736499	6.408312	chr8	23243551	23243732	LTR|ERV1|LTR21A	+	chr8	23243636	23262000	CHMP7|NM_152272.4	+	23243636,23246255,23249209,23255246,23256459,23258032,23258329,23258731,23259065,23260143,23260537	23243844,23246994,23249381,23255432,23256593,23258081,23258449,23258830,23259126,23260323,23262000	0.650350
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	27409660	27409663	27409660	-	RAMPAGE_only	3	4	7	0.231857	2.584963	chr10	27409469	27409805	LTR|ERVL-MaLR|MLT1A0	-	chr10	27397120	27414368	PTCHD3|ENST00000642324.1	-	27397120,27403211,27411807,27413161	27399240,27403357,27411929,27414368	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	113187330	113187344	113187343	-	High_confidence	6	6	13	0.430591	3.546594	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.615385
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	29647337	29647361	29647337	+	High_confidence	4	4	20	0.662447	3.932138	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	27525738	27525746	27525738	+	High_confidence	2	2	8	0.264979	2.521641	chr1	27525728	27525810	LINE|L2|L2b	+	chr1	27525804	27530561	BX293535.1|ENST00000443579.1	+	27525804,27530359	27525885,27530561	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	113759894	113759899	113759898	-	High_confidence	3	3	7	0.231857	2.807355	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	3536827	3536863	3536845	-	High_confidence	10	10	49	1.622996	5.247363	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.775510
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	33554875	33554904	33554882	+	RAMPAGE_only	11	11	44	1.457384	4.936260	chr7	33553757	33554962	LINE|L2|L2a	-	chr7	33344606	33605626	BBS9|ENST00000434373.3	+	33344606,33349067,33351218,33352858,33357854,33367766,33383665,33387991,33505462,33533953,33604864	33344634,33349170,33351323,33352873,33357995,33367862,33383838,33388144,33505645,33534176,33605626	0.772727
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	76781587	76781593	76781587	+	RAMPAGE_only	2	2	7	0.231857	2.521641	chr12	76781376	76781761	LTR|ERVL-MaLR|MSTD	+	chr12	76797518	76822490	ZDHHC17|ENST00000549944.1	+	76797518,76805316,76809042,76809712,76813312,76815145,76815856,76822405	76797537,76805439,76809120,76809857,76813449,76815210,76816019,76822490	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	77099126	77099127	77099126	+	High_confidence	5	5	8	0.264979	3.000000	chr14	77099069	77099131	DNA|hAT-Ac|OldhAT1	+	chr14	77098234	77117287	CIPC|NM_033426.2	+	77098234,77105656,77109811,77113424	77098361,77105844,77109981,77117287	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	97475655	97475656	97475655	-	RAMPAGE_only	109	124	143	4.736499	6.381686	chr1	97475570	97475778	DNA|hAT-Charlie|MER58A	-	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.783217
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	48685460	48685461	48685460	+	High_confidence	11	11	15	0.496836	2.950212	chr10	48685477	48685570	SINE|MIR|MIR1_Amn	+	chr10	48685472	48982956	WDFY4|NM_020945.1	+	48685472,48709715,48720010,48721260,48723432,48725880,48727469,48729431,48731109,48733930,48735879,48742967,48760346,48774457,48775711,48776749,48777418,48778610,48779940,48786638,48788529,48789873,48790726,48796297,48803285,48805259,48806003,48807858,48810529,48811538,48813956,48817244,48820233,48821061,48822379,48826670,48828777,48830699,48832572,48867264,48873490,48875088,48877032,48890578,48897453,48900220,48901800,48941805,48943329,48946039,48946859,48957128,48959721,48963841,48966525,48969063,48970130,48974861,48976796,48978308,48981366,48982508	48685532,48709966,48720125,48721367,48723567,48726070,48727659,48729589,48731562,48734035,48736070,48743548,48760440,48774672,48775806,48776984,48777495,48778832,48780119,48786870,48788675,48789985,48790917,48796450,48803359,48805421,48806095,48807958,48810735,48811708,48814082,48817409,48820437,48821176,48822537,48826909,48828896,48830885,48832709,48867342,48873697,48875140,48877199,48890727,48897574,48900306,48901863,48941848,48943449,48946157,48946969,48957282,48959813,48964054,48966673,48969248,48970289,48975041,48976979,48978393,48981478,48982956	0.733333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	74071070	74071073	74071070	-	High_confidence	3	3	6	0.198734	2.584963	chr11	74070756	74071175	LINE|L2|L2c	+	chr11	74049518	74070869	C2CD3|ENST00000542484.1	-	74049518,74054606,74057405,74070505	74049542,74054671,74057544,74070869	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	65300634	65300635	65300634	-	High_confidence	39	39	39	1.291772	4.560667	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65266576	65300618	PARP16|ENST00000558873.1	-	65266576,65270934,65282546,65300196	65266768,65271072,65282632,65300618	0.794872
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	65431761	65432065	65432016	+	RAMPAGE_only	21	21	290	9.605487	6.192576	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.993103
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	45441877	45441878	45441877	-	High_confidence	19	19	21	0.695570	3.932138	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45430651	45441808	AC025580.1|ENST00000559553.1	-	45430651,45433612,45441780	45430814,45434150,45441808	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	8842153	8842175	8842153	+	High_confidence	16	17	33	1.093038	4.280639	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.818182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	103890280	103890286	103890285	-	RAMPAGE_only	8	8	15	0.496836	3.521641	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103917669	STN1|ENST00000369764.1	-	103882554,103889071,103892129,103897547,103898876,103900061,103905090,103910526,103917461	103882841,103889144,103892252,103897719,103899000,103900223,103905156,103910622,103917669	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	19344364	19344389	19344364	-	RAMPAGE_only	5	6	14	0.463713	3.182006	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.928571
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	127013187	127013211	127013187	+	High_confidence	2	3	7	0.231857	2.521641	chr8	127013164	127013252	LTR|ERV1|LTR78B	+	chr8	127013153	127021014	PCAT1|NR_045262.1	+	127013153,127019643	127013774,127021014	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	27579285	27579303	27579302	+	RAMPAGE_only	3	3	7	0.231857	2.584963	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	58306188	58306214	58306188	+	High_confidence	4	4	8	0.264979	2.521641	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305374	58314781	ERVK3-1|ENST00000610038.5	+	58305374,58306087,58312027,58314747	58305445,58306216,58312462,58314781	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	161518891	161519018	161518891	+	RAMPAGE_only	20	20	123	4.074052	4.151006	chr1	161518618	161518922	SINE|Alu|AluSz6	-	chr1	161505429	161519568	FCGR2A|ENST00000271450.10	+	161505429,161505986,161506333,161509819,161510833,161513894,161517974	161505552,161506007,161506591,161510074,161510956,161513932,161519568	0.975610
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	77175254	77175303	77175302	+	High_confidence	15	16	57	1.887975	4.896292	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.982456
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	126600248	126600249	126600248	+	High_confidence	7	8	8	0.264979	2.807355	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	35713328	35713388	35713387	-	High_confidence	2	2	9	0.298101	2.725481	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	39485802	39485803	39485802	+	High_confidence	8	8	8	0.264979	2.500000	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	176162936	176162953	176162936	-	RAMPAGE_only	2	2	7	0.231857	2.521641	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	44662617	44662623	44662617	-	RAMPAGE_only	5	5	12	0.397468	2.845351	chr15	44662388	44662674	SINE|Alu|AluJb	+	chr15	44563120	44663647	SPG11|ENST00000427534.6	-	44563120,44567423,44569397,44570524,44572682,44573546,44574901,44583813,44585635,44589251,44592330,44595258,44596082,44596783,44598264,44598630,44600466,44606024,44608443,44610839,44613429,44615362,44620189,44621758,44622219,44622727,44626330,44628668,44629232,44633504,44648865,44651490,44652128,44657094,44659078,44660431,44663390	44563301,44567592,44569505,44570658,44572820,44573745,44575041,44584558,44585850,44589414,44592438,44595459,44596355,44596943,44598373,44598836,44600632,44606091,44608605,44610985,44613536,44615566,44620403,44621934,44622347,44622799,44626507,44628844,44629388,44633637,44649011,44651939,44652266,44657296,44659303,44660616,44663647	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	145553507	145553532	145553507	+	RAMPAGE_only	2	2	8	0.264979	2.807355	chr4	145553310	145553641	DNA|hAT-Charlie|MER1B	-	chr4	145544177	145558079	SMAD1|ENST00000511125.1	+	145544177,145553783,145557790	145546924,145554040,145558079	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	2867835	2867851	2867835	+	High_confidence	7	7	14	0.463713	3.238901	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.928571
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	10553364	10553365	10553364	+	High_confidence	278	297	311	10.301057	6.877629	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.749196
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	147173193	147173261	147173260	+	High_confidence	3	3	19	0.629325	4.169925	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.789474
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	53523862	53523906	53523890	-	High_confidence	7	8	29	0.960549	4.450212	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.896552
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	12409848	12409855	12409854	+	RAMPAGE_only	10	10	23	0.761815	4.186704	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.913043
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	27409715	27409729	27409715	-	RAMPAGE_only	6	6	10	0.331224	3.169925	chr10	27409469	27409805	LTR|ERVL-MaLR|MLT1A0	-	chr10	27397120	27414368	PTCHD3|ENST00000642324.1	-	27397120,27403211,27411807,27413161	27399240,27403357,27411929,27414368	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	40388737	40388738	40388737	+	RAMPAGE_only	329	331	387	12.818357	5.707007	chr1	40387671	40389155	LTR|ERV1|LTR12C	+	chr1	40373696	40415369	MSTRG.653.4	+	40373696,40399592,40408652,40409756,40413015,40414158,40415271	40399258,40406869,40408738,40409835,40413102,40414240,40415369	0.981912
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	105353510	105353543	105353510	+	High_confidence	8	10	51	1.689241	4.903465	chr12	105353069	105353608	LTR|ERVL-MaLR|MLT1K	-	chr12	105353508	105371203	C12orf75|ENST00000548336.1	+	105353508,105365806,105366616,105367471,105370633	105353586,105365842,105366696,105367509,105371203	0.941176
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	95594539	95594572	95594539	-	RAMPAGE_only	2	2	9	0.298101	2.725481	chr7	95594375	95594617	SINE|MIR|MIR	-	chr7	95583498	95596460	MSTRG.21234.1	-	95583498,95587009,95587417,95587726,95589639,95591987,95592510,95592759,95596163	95585781,95587123,95587528,95587825,95589716,95592065,95592597,95595164,95596460	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	97521630	97521631	97521630	-	High_confidence	6	6	8	0.264979	3.000000	chr15	97521399	97521640	SINE|tRNA|LFSINE_Vert	+	chr15	97370370	97521811	LINC02254|ENST00000558621.2	-	97370370,97397656,97427650,97515286,97521580	97371341,97397740,97427952,97515424,97521811	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	50443255	50443314	50443278	-	High_confidence	4	4	25	0.828059	4.323856	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	200889279	200889318	200889293	-	High_confidence	43	43	147	4.868988	6.220074	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.687075
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	26126335	26126336	26126335	+	RAMPAGE_only	4	4	7	0.231857	2.521641	chr2	26126295	26126597	SINE|Alu|AluSz6	+	chr2	26034109	26137454	RAB10|ENST00000264710.4	+	26034109,26098661,26109767,26127143,26127849,26134937	26034735,26098722,26109906,26127233,26127951,26137454	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	87524679	87524701	87524679	-	RAMPAGE_only	7	7	18	0.596203	3.852169	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87473417	87529092	SPARCL1|ENST00000503414.5	-	87473417,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87497130,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87497239,87499585,87529092	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	134537889	134537906	134537889	+	High_confidence	4	4	14	0.463713	2.873141	chr7	134537885	134537973	SINE|MIR|MIRb	+	chr7	134537612	134541408	AKR1B10|ENST00000496435.1	+	134537612,134538144,134538934,134541046	134537661,134538277,134539017,134541408	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	45292676	45292709	45292685	+	High_confidence	7	11	27	0.894304	4.440636	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.925926
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	71383124	71383130	71383129	+	RAMPAGE_only	5	6	9	0.298101	2.947703	chrX	71383170	71383464	LINE|L1|L1MC5a	+	chrX	71387085	71388301	TAF1|ENST00000472567.1	+	71387085,71388236	71387461,71388301	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	71745875	71745899	71745875	+	High_confidence	14	14	73	2.417933	5.473870	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.972603
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	94119471	94119493	94119471	+	RAMPAGE_only	23	25	68	2.252321	5.359378	chr13	94119131	94119537	LINE|L2|L2a	-	chr13	94286347	94403217	GPC6|ENST00000617456.1	+	94286347,94305979,94382413,94398465,94403014	94286479,94306123,94382550,94398641,94403217	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	6673446	6673447	6673446	+	High_confidence	10	10	10	0.331224	2.921928	chr4	6672540	6673747	LTR|ERV1|LTR12C	+	chr4	6673450	6676047	AC093323.1|ENST00000307533.10	+	6673450,6674992	6674706,6676047	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	21876237	21876316	21876237	-	RAMPAGE_only	5	5	27	0.894304	4.392747	chr1	21876092	21876241	LINE|L2|L2c	+	chr1	21823300	21896271	MSTRG.352.3	-	21823300,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884677,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896271	0.962963
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	15798662	15798665	15798664	-	RAMPAGE_only	8	11	15	0.496836	3.664498	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.866667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	47753920	47753962	47753940	+	High_confidence	8	10	48	1.589874	4.925523	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47753929	47756485	SLC48A1|ENST00000552003.1	+	47753929,47755701	47754027,47756485	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	75512945	75512946	75512945	+	High_confidence	6	6	6	0.198734	2.584963	chr5	75512845	75513016	SINE|Alu|AluSx1	+	chr5	75512068	75573837	POLK|ENST00000514296.5	+	75512068,75534827,75547009,75552471,75569339,75573737	75512946,75534964,75547157,75552591,75569492,75573837	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	118835953	118835954	118835953	-	High_confidence	6	6	7	0.231857	2.584963	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	11587465	11587469	11587465	-	High_confidence	6	6	17	0.563080	3.750000	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.941176
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	4269605	4269614	4269609	-	High_confidence	17	17	45	1.490507	3.958543	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.933333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	85378112	85378113	85378112	-	High_confidence	519	538	538	17.819835	5.575172	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.934944
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	228309243	228309293	228309292	+	RAMPAGE_only	2	2	9	0.298101	3.000000	chr1	228309335	228309443	LINE|CR1|L3	+	chr1	228294194	228378874	MSTRG.2213.11	+	228294194,228303674,228304302,228306900,228307258,228308110,228309098,228309483,228315846,228316708,228317891,228318883,228321343,228323327,228332859,228333198,228333582,228334511,228334814,228335079,228335790,228336199,228337003,228337243,228337943,228338289,228338852,228339941,228340505,228340723,228341094,228341436,228342118,228349889,228350840,228351320,228352950,228362575,228364980,228365435,228366073,228366399,228366807,228366974,228367885,228368338,228368721,228369135,228369941,228370192,228370678,228371022,228373931,228374313,228374584,228375701,228376007,228376792,228377051,228377488,228377930,228378270,228378617	228300145,228303938,228306638,228307167,228307531,228308383,228309295,228309559,228316119,228317751,228318173,228319254,228322214,228323606,228332938,228333323,228333780,228334544,228334913,228335298,228335851,228336270,228337126,228337383,228338144,228338372,228339026,228340101,228340622,228340888,228341253,228341614,228342232,228350057,228350943,228351450,228353062,228362755,228365077,228365560,228366186,228366568,228366889,228367175,228367946,228368416,228368894,228369162,228370094,228370238,228370756,228373081,228374012,228374424,228374752,228375824,228376178,228376874,228377291,228377712,228378006,228378420,228378874	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	9140393	9140428	9140427	+	High_confidence	40	40	176	5.829537	6.574038	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.710227
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	18794054	18794086	18794077	+	High_confidence	70	70	214	7.088187	6.573094	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.990654
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	51961397	51961429	51961407	+	High_confidence	3	3	13	0.430591	2.719295	chr8	51960557	51961435	LINE|L2|L2a	-	chr8	51961457	52022974	AC064807.2|ENST00000521188.1	+	51961457,52022415	51961570,52022974	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	193614854	193614873	193614872	+	High_confidence	3	3	8	0.264979	2.521641	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	166957417	166957439	166957417	-	High_confidence	3	3	9	0.298101	2.947703	chr6	166957416	166957859	LINE|L2|L2a	+	chr6	166929539	166957184	RNASET2|ENST00000476238.6	-	166929539,166931043,166934090,166938894,166943018,166946681,166948569,166952487,166956096,166957125	166929791,166931118,166934136,166939008,166943089,166946739,166948625,166952548,166956191,166957184	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	106270161	106270191	106270173	-	RAMPAGE_only	2	2	10	0.331224	2.725481	chr7	106270098	106270260	LINE|RTE-X|L4_B_Mam	+	chr7	106248284	106284887	MSTRG.21388.1	-	106248284,106253016,106254363,106267880,106269153,106274945,106277022,106284827	106251193,106253151,106267551,106268600,106272658,106275049,106277179,106284887	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	38121491	38121492	38121491	+	High_confidence	12	12	18	0.596203	3.852169	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.944444
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	139344535	139344548	139344547	+	High_confidence	29	29	91	3.014136	4.845407	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	34244753	34244816	34244753	-	High_confidence	7	8	73	2.417933	5.296931	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34244698	MSTRG.18299.2	-	34175821,34179012,34182679,34218294,34244615	34175957,34179097,34182867,34218450,34244698	0.630137
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	37353636	37353649	37353636	-	High_confidence	38	40	75	2.484178	5.489098	chr7	37353223	37353900	LTR|ERV1|LTR12_	-	chr7	36852905	37353668	ELMO1|NM_001206482.1	-	36852905,36861658,36870392,36878009,36887559,36894853,37013298,37096618,37133129,37211385,37213334,37216644,37222614,37224878,37233094,37244355,37259180,37271831,37314849,37315919,37342612,37353031	36855751,36861736,36870475,36878117,36887672,36895017,37013435,37096727,37133234,37211517,37213457,37216695,37222693,37225030,37233194,37244391,37259350,37271882,37314922,37315960,37342763,37353668	0.813333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	28291847	28291848	28291847	+	High_confidence	364	386	418	13.845151	6.283789	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.622010
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	168093055	168093057	168093055	-	High_confidence	4	6	9	0.298101	2.500000	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.555556
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	29667400	29667418	29667417	-	RAMPAGE_only	11	12	39	1.291772	4.837148	chr17	29667384	29667678	DNA|hAT-Charlie|MER1B	+	chr17	29630799	29761417	SSH2|ENST00000649863.1	-	29630799,29635967,29648143,29650653,29655560,29666866,29667129,29671934,29676819,29677672,29684562,29695458,29702958,29761149	29632931,29636802,29648344,29650800,29655607,29666995,29667223,29672129,29676885,29677738,29684684,29695523,29703062,29761417	0.923077
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	84	84	84	2.782279	4.142669	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	64242582	64242620	64242619	+	High_confidence	82	83	308	10.201690	6.065772	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.993506
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	39335661	39335718	39335672	-	High_confidence	8	10	28	0.927426	4.236369	chr19	39335628	39335746	DNA|hAT-Tip100|MER91A	-	chr19	39328358	39335531	GMFG|ENST00000596583.5	-	39328358,39328999,39329547,39333076,39335434	39328548,39329073,39329626,39333126,39335531	0.892857
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	180830990	180831032	180831009	+	High_confidence	33	33	260	8.611816	6.612640	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.957692
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	58851957	58851958	58851957	+	RAMPAGE_only	4	6	6	0.198734	2.584963	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	16353884	16353889	16353884	+	High_confidence	13	14	20	0.662447	3.892407	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16353416	16364409	MGST1|ENST00000396207.1	+	16353416,16354230,16357604,16363794	16353467,16354378,16357699,16364409	0.850000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	48012913	48012945	48012913	-	High_confidence	2	2	11	0.364346	3.277613	chr4	48012591	48013262	LTR|ERV1|MER4-int	-	chr4	47935976	48012944	CNGA1|NM_000087.3	-	47935976,47940762,47942040,47943180,47943370,47949832,47951352,47952582,47981392,48010793,48012888	47937829,47940869,47942148,47943288,47943412,47949895,47951469,47952703,47981500,48010893,48012944	0.636364
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	40350303	40350411	40350410	-	RAMPAGE_only	19	27	91	3.014136	5.354022	chr13	40350403	40350604	SINE|MIR|MIR3	+	chr13	40284776	40403766	LINC00598|ENST00000636192.1	-	40284776,40343956,40350108,40403598	40285666,40344205,40350302,40403766	0.725275
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	31582649	31582650	31582649	+	RAMPAGE_only	13	13	14	0.463713	3.180833	chr6	31582632	31582783	SINE|MIR|MIR3	-	chr6	31586123	31588909	LST1|ENST00000418507.6	+	31586123,31587199,31587943,31588517	31586315,31587318,31587966,31588909	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	11193340	11193367	11193340	+	High_confidence	7	7	17	0.563080	3.616875	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.588235
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	110936582	110936585	110936584	+	High_confidence	178	300	407	13.480805	5.372111	chr12	110936431	110936780	LTR|ERVL-MaLR|THE1D	+	chr12	110936601	110937451	LINC01405|ENST00000331096.2	+	110936601,110937184	110936698,110937451	0.896806
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	59892716	59892746	59892716	-	High_confidence	5	5	18	0.596203	3.690117	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.944444
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	128369561	128369606	128369561	+	RAMPAGE_only	3	3	17	0.563080	3.405639	chr3	128369587	128369654	SINE|MIR|MIRb	+	chr3	128153500	128408642	EEFSEC|ENST00000483457.1	+	128153500,128246835,128262127,128341232,128408068	128153823,128247043,128262224,128341889,128408642	0.941176
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	82214040	82214042	82214041	-	RAMPAGE_only	73	115	145	4.802744	5.579019	chr7	82213847	82214213	LTR|ERVL-MaLR|MLT1A0	-	chr7	81950101	82443715	CACNA2D1|ENST00000356253.9	-	81950101,81959274,81959719,81961893,81962439,81964055,81964206,81965593,81967168,81967595,81968886,81969880,81970674,81971776,81974454,81982566,81984634,81991184,81994867,81997178,82001658,82005422,82005764,82007678,82012153,82013460,82014400,82032796,82038076,82060427,82064303,82066454,82084768,82117043,82136634,82170549,82335134,82349567,82443364	81950508,81959357,81959829,81962023,81962495,81964108,81964359,81965665,81967207,81967663,81968973,81969984,81970737,81971864,81974552,81982627,81984711,81991246,81994939,81997250,82001715,82005497,82005839,82007756,82012243,82013510,82014479,82032901,82038235,82060527,82064354,82066524,82084900,82117173,82136676,82170609,82335251,82349649,82443715	0.889655
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	74070873	74070879	74070873	-	High_confidence	14	15	22	0.728692	3.884184	chr11	74070756	74071175	LINE|L2|L2c	+	chr11	74049518	74070869	C2CD3|ENST00000542484.1	-	74049518,74054606,74057405,74070505	74049542,74054671,74057544,74070869	0.818182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	188947212	188947237	188947212	+	High_confidence	6	6	24	0.794937	4.105389	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	127543805	127543810	127543805	-	RAMPAGE_only	10	10	19	0.629325	4.058814	chr9	127543678	127543822	LINE|L2|L2c	+	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.684211
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	87503005	87503021	87503011	-	RAMPAGE_only	5	5	10	0.331224	2.947703	chr4	87502566	87503540	LINE|L1|HAL1	-	chr4	87473417	87529092	SPARCL1|ENST00000503414.5	-	87473417,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87497130,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87497239,87499585,87529092	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	50541367	50541389	50541388	+	RAMPAGE_only	15	15	73	2.417933	4.913262	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	0.876712
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	73837439	73837494	73837439	-	RAMPAGE_only	12	12	46	1.523629	3.791830	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.847826
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	3129660	3129669	3129660	-	RAMPAGE_only	5	5	11	0.364346	2.921928	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3128832	3132042	ZNF213-AS1|ENST00000573447.1	-	3128832,3131746	3129653,3132042	0.545455
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	51795150	51795167	51795150	+	High_confidence	8	8	29	0.960549	4.324863	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795145	51826190	FPR3|NM_002030.4	+	51795145,51823738	51795331,51826190	0.931034
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	101823631	101823653	101823652	+	High_confidence	33	33	88	2.914769	5.032267	chr14	101823598	101823757	SINE|MIR|MIRc	-	chr14	101824161	101824478	PPP2R5C|ENST00000607042.1	+	101824161	101824478	0.590909
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	93863039	93863066	93863065	+	High_confidence	5	5	22	0.728692	4.459432	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.545455
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	29647246	29647283	29647246	+	High_confidence	4	4	20	0.662447	3.826875	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	10400701	10400737	10400713	+	High_confidence	2	2	9	0.298101	2.750000	chr5	10399603	10400724	LINE|L1|L1MC5a	-	chr5	10400932	10402451	MARCH6|ENST00000514961.1	+	10400932,10402058,10402383	10401486,10402139,10402451	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	74260114	74260162	74260126	-	RAMPAGE_only	3	3	16	0.529958	2.955913	chrX	74259927	74260438	LTR|ERV1|LTR9B	+	chrX	74209975	74292529	MSTRG.23896.12	-	74209975,74218620,74280930,74281701,74292426	74218577,74280494,74281085,74281848,74292529	0.937500
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	29924847	29924860	29924847	+	High_confidence	2	2	7	0.231857	2.521641	chr3	29924556	29924859	SINE|Alu|AluSp	+	chr3	29924750	29991197	RBMS3|ENST00000473799.1	+	29924750,29936085,29944206,29988142,29991081	29925243,29936196,29944254,29988223,29991197	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	157113199	157113206	157113199	-	RAMPAGE_only	2	2	8	0.264979	2.750000	chr5	157112815	157113303	LINE|L1|L1MC5a	-	chr5	157085831	157109714	HAVCR2|ENST00000307851.8	-	157085831,157088940,157095305,157098857,157104665,157106626,157108925	157087294,157088977,157095459,157098901,157104749,157106962,157109714	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	46105691	46105696	46105693	-	RAMPAGE_only	61	85	132	4.372153	5.753653	chr6	46104973	46106121	LTR|ERV1|LTR49-int	+	chr6	46097092	46129591	AL035701.1|ENST00000444038.2	-	46097092,46102539,46129503	46097346,46102659,46129591	0.568182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	50666923	50666930	50666929	-	RAMPAGE_only	3	4	8	0.264979	2.807355	chr14	50666916	50667076	SINE|MIR|MIRb	+	chr14	50633635	50668331	SAV1|ENST00000324679.4	-	50633635,50640749,50644743,50665178,50667873	50635384,50640893,50645014,50665619,50668331	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	110871187	110871210	110871209	+	High_confidence	14	14	49	1.622996	4.857676	chr1	110870731	110871665	LINE|L2|L2b	-	chr1	110871198	110899936	CD53|NM_001040033.1	+	110871198,110873155,110891391,110892344,110894326,110894959,110896652,110897808,110899123	110871259,110873248,110891471,110892533,110894401,110895055,110896733,110897892,110899936	0.632653
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	70843191	70843253	70843252	-	RAMPAGE_only	4	5	30	0.993671	4.548394	chr4	70843081	70843484	LTR|ERV1|LTR54	+	chr4	70815781	70839945	GRSF1|ENST00000254799.10	-	70815781,70824293,70825295,70826123,70827851,70831538,70832306,70833117,70836157,70839470	70820861,70824368,70825431,70826245,70828036,70831674,70832450,70833273,70836314,70839945	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	122917834	122917838	122917834	-	RAMPAGE_only	4	4	8	0.264979	2.807355	chr4	122917758	122918008	LINE|L2|L2b	+	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	79493485	79493500	79493499	+	High_confidence	3	3	8	0.264979	2.521641	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	75127206	75127272	75127261	-	RAMPAGE_only	18	29	176	5.829537	5.368676	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.903409
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	50756939	50756950	50756939	+	High_confidence	3	3	7	0.231857	2.584963	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	3795750	3795789	3795750	+	High_confidence	22	22	114	3.775950	5.834479	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.973684
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	85330227	85330238	85330237	-	RAMPAGE_only	5	5	10	0.331224	3.121928	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	13477897	13477934	13477897	+	RAMPAGE_only	4	4	27	0.894304	3.244854	chr9	13476790	13478011	LINE|L1|L1PA15	-	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.962963
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	29352964	29352990	29352964	+	RAMPAGE_only	3	3	7	0.231857	2.807355	chr3	29352454	29352967	LINE|L1|L1MA4A	-	chr3	29329919	29739922	MSTRG.16018.25	+	29329919,29337317,29488440,29587113,29739719	29337284,29434915,29488499,29587205,29739922	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	74052559	74052560	74052559	+	High_confidence	11	11	14	0.463713	3.235926	chr7	74052324	74052610	SINE|Alu|AluJr	+	chr7	74052293	74056365	ELN|ENST00000466878.5	+	74052293,74053162,74054715,74056270	74052561,74053309,74054769,74056365	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	65838747	65838748	65838747	-	RAMPAGE_only	5	5	7	0.231857	2.807355	chr8	65838685	65838845	DNA|TcMar-Tigger|Tigger15a	-	chr8	65718378	65841508	MSTRG.22186.3	-	65718378,65723540,65724254,65724776,65726874,65727169,65737066,65747651,65779719,65782782,65788881,65841370	65719495,65723621,65724351,65724921,65726966,65736955,65745470,65747803,65779803,65782843,65788978,65841508	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	10454487	10454494	10454487	-	High_confidence	3	4	10	0.331224	2.921928	chr12	10454129	10454577	LINE|L1|L1M3a	+	chr12	10446027	10454616	KLRC1|NM_213658.2	-	10446027,10447531,10449236,10449913,10450483,10450969,10453197,10454331	10446662,10447632,10449388,10449967,10450579,10451187,10453269,10454616	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	134612587	134612614	134612613	-	RAMPAGE_only	14	14	66	2.186076	3.988634	chr5	134612457	134612672	SINE|Alu|AluSz6	+	chr5	134606429	134614903	SAR1B|ENST00000508363.5	-	134606429,134608371,134609570,134612690	134607066,134608503,134609674,134614903	0.984848
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	74664443	74664477	74664476	+	RAMPAGE_only	5	6	10	0.331224	3.121928	chr7	74664429	74664732	SINE|Alu|AluSz	-	chr7	74658030	74717066	GTF2I|ENST00000443166.5	+	74658030,74689123,74690972,74698960,74700246,74700605,74705163,74706389,74711031,74716893	74658068,74689227,74691111,74699095,74700430,74700634,74705218,74706433,74711109,74717066	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	101583353	101583354	101583353	+	RAMPAGE_only	4	4	7	0.231857	2.807355	chr13	101583386	101583681	LINE|L1|L1MA1	+	chr13	101598144	101718344	ITGBL1|ENST00000490242.2	+	101598144,101692584,101706755,101714437,101715562,101717498	101598299,101692701,101706902,101714551,101715670,101718344	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	75613161	75613166	75613165	+	RAMPAGE_only	12	12	20	0.662447	4.021928	chr2	75612715	75613195	LTR|ERVL|LTR33A	-	chr2	75646782	75657860	MRPL19|ENST00000393909.6	+	75646782,75647101,75652141,75652522,75654735,75655063	75646910,75647219,75652260,75652657,75654917,75657860	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	36584327	36584334	36584327	-	High_confidence	2	2	6	0.198734	2.584963	chr2	36584029	36584427	LTR|ERVL|LTR33	+	chr2	36555682	36584058	FEZ2|ENST00000464964.1	-	36555682,36558437,36578596,36581289,36583352,36584029	36555748,36558513,36578865,36581431,36583469,36584058	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	130978732	130978739	130978738	-	High_confidence	24	25	40	1.324895	4.663231	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	133602417	133602418	133602417	-	RAMPAGE_only	4	4	6	0.198734	2.584963	chr9	133602245	133602376	SINE|MIR|MIR	-	chr9	133578956	133586197	FAM163B|ENST00000496132.1	-	133578956,133580130,133585975	133579429,133580246,133586197	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	233357063	233357067	233357063	+	RAMPAGE_only	3	3	9	0.298101	2.500000	chr2	233356905	233357200	LTR|ERVL|LTR33A_	-	chr2	233354571	233392399	DGKD|ENST00000442524.4	+	233354571,233388256,233390402,233392069	233354674,233388367,233390483,233392399	0.555556
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	38468422	38468437	38468436	-	High_confidence	9	9	19	0.629325	3.576618	chr5	38468426	38468568	SINE|MIR|MIRc	-	chr5	38466162	38468339	AC010457.1|ENST00000510137.1	-	38466162,38468238	38466398,38468339	0.894737
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	99410092	99410119	99410092	+	High_confidence	3	3	14	0.463713	3.521641	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	10363956	10363965	10363964	+	High_confidence	9	9	17	0.563080	2.875000	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.823529
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	17895504	17895505	17895504	-	High_confidence	5	5	7	0.231857	2.584963	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	129559620	129559621	129559620	-	High_confidence	7	7	11	0.364346	2.846439	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	0.818182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	73841827	73841877	73841876	-	High_confidence	10	10	36	1.192405	4.253212	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.861111
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	89888929	89888962	89888929	+	RAMPAGE_only	38	47	93	3.080380	5.187126	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.623656
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	643625	643636	643635	-	High_confidence	74	75	298	9.870466	5.156615	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.959732
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	152412528	152412529	152412528	-	High_confidence	8	8	9	0.298101	2.750000	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	12183982	12184005	12183982	-	RAMPAGE_only	1	1	7	0.231857	2.584963	chr12	12183981	12184016	LINE|RTE-BovB|MamRTE1	-	chr12	12116028	12244304	LRP6|ENST00000538239.5	-	12116028,12120369,12121085,12124564,12125295,12126690,12130782,12131820,12135174,12138324,12147365,12148941,12150835,12158828,12159779,12162192,12164272,12165078,12179809,12181042,12183979,12186922,12203202,12244261	12119330,12120403,12121420,12124662,12125432,12126921,12130893,12132057,12135300,12138534,12147556,12149153,12151038,12159155,12159964,12162419,12164562,12165295,12179981,12181439,12184111,12187119,12203400,12244304	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	59619894	59619929	59619894	+	High_confidence	515	578	1923	63.694318	6.635881	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.880915
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	6590285	6590320	6590319	+	High_confidence	2	2	8	0.264979	3.000000	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	87524562	87524585	87524562	-	RAMPAGE_only	4	6	17	0.563080	3.750000	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87473417	87529092	SPARCL1|ENST00000503414.5	-	87473417,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87497130,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87497239,87499585,87529092	0.529412
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	34369420	34369435	34369420	+	RAMPAGE_only	2	2	8	0.264979	2.807355	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	16277868	16277924	16277868	+	RAMPAGE_only	8	8	69	2.285444	5.553964	chr6	16277565	16277912	LINE|L2|L2b	-	chr6	16289517	16295544	GMPR|ENST00000544145.1	+	16289517,16290461,16295005	16289568,16290621,16295544	0.710145
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	55982737	55982800	55982799	-	High_confidence	8	8	40	1.324895	4.123479	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.850000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr18	75280681	75280741	75280681	+	RAMPAGE_only	5	6	27	0.894304	4.363713	chr18	75280540	75280747	SINE|MIR|MIRb	+	chr18	75282863	75289943	TSHZ1|ENST00000584217.1	+	75282863	75289943	0.851852
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	82081603	82081652	82081606	-	RAMPAGE_only	9	9	44	1.457384	4.834209	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079006	82085660	MSTRG.11049.4	-	82079006,82079253,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82085034,82085237,82085481	82079116,82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084953,82085156,82085402,82085660	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	45825373	45825406	45825405	-	RAMPAGE_only	5	7	13	0.430591	3.180833	chr20	45825287	45825591	SINE|Alu|AluSx	-	chr20	45823213	45827314	TNNC2|NM_003279.2	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827314	0.923077
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	30974856	30974879	30974856	-	RAMPAGE_only	4	4	18	0.596203	3.852169	chr10	30974767	30974948	SINE|MIR|MIR3	-	chr10	30844633	30984426	ZNF438|ENST00000361310.7	-	30844633,30848530,30876997,30908932,30910359,30941574,30984368	30845573,30850367,30877065,30909015,30910440,30941651,30984426	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	92678192	92678200	92678192	-	RAMPAGE_only	3	4	8	0.264979	2.521641	chr15	92678051	92678466	LTR|ERVL-MaLR|MSTC	-	chr15	92619182	92668043	FAM174B|ENST00000557480.5	-	92619182,92630213,92667897	92619459,92630345,92668043	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	49516087	49516103	49516095	+	RAMPAGE_only	5	5	12	0.397468	2.845351	chr19	49516011	49516134	LINE|L2|L2a	-	chr19	49514057	49526333	FCGRT|ENST00000598076.1	+	49514057,49514210,49526009	49514133,49514486,49526333	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	117836274	117836293	117836274	+	RAMPAGE_only	6	6	11	0.364346	2.921928	chr11	117836254	117836523	SINE|Alu|AluJb	-	chr11	117833892	117837655	AP000757.1|ENST00000525260.5	+	117833892,117836268,117837167	117834061,117836502,117837655	0.818182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	73567616	73567617	73567616	+	High_confidence	10	10	12	0.397468	3.084963	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	56160917	56160963	56160929	-	High_confidence	8	11	35	1.159283	4.729283	chr5	56160851	56161074	SINE|MIR|MIR	+	chr5	56111577	56160929	ANKRD55|ENST00000505970.2	-	56111577,56114202,56116614,56143800,56156945,56159832,56160787	56111782,56114300,56116782,56143929,56156995,56159893,56160929	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	30456469	30456514	30456513	+	RAMPAGE_only	6	7	18	0.596203	3.852169	chr17	30456561	30456872	SINE|Alu|AluSx1	+	chr17	30380477	30469657	CPD|NM_001199775.1	+	30380477,30384988,30420840,30421663,30422673,30423505,30427390,30431771,30438974,30442307,30443801,30445690,30449552,30451710,30455338,30456255,30456461,30461179,30461876,30462369,30464587	30380642,30385236,30420983,30421833,30423023,30423697,30427558,30431881,30439077,30442450,30443971,30446020,30449748,30451846,30455470,30456351,30456526,30461311,30462062,30462469,30469657	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	73463624	73463630	73463624	-	RAMPAGE_only	25	25	55	1.821730	5.381360	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73275106	73458617	NUMB|ENST00000554546.5	-	73275106,73282358,73284080,73287109,73292733,73297210,73323129,73355625,73366896,73409936,73458492	73277293,73282505,73284374,73287314,73292874,73297285,73323204,73355766,73366981,73410068,73458617	0.545455
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	25346017	25346046	25346023	-	High_confidence	38	38	122	4.040929	6.029737	chr15	25345979	25347018	LINE|L1|L1ME2	+	chr15	25333727	25346031	UBE3A|ENST00000636667.1	-	25333727,25340084,25345979	25339257,25340228,25346031	0.893443
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	45833293	45833313	45833293	-	High_confidence	15	16	70	2.318566	4.391256	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.971429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	65639861	65639872	65639871	+	High_confidence	4	4	10	0.331224	3.321928	chr11	65639882	65640011	SINE|MIR|MIRc	+	chr11	65640120	65650920	SIPA1|NM_153253.29	+	65640120,65640800,65642249,65642462,65644954,65645853,65646220,65646455,65647383,65649261,65649560,65649756,65649949,65650137,65650400,65650568	65640295,65641600,65642377,65642639,65645129,65645957,65646378,65647065,65647658,65649480,65649672,65649865,65650051,65650192,65650479,65650920	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	9108757	9108787	9108786	+	RAMPAGE_only	5	5	11	0.364346	3.095795	chr16	9108771	9108857	SINE|MIR|MIRb	+	chr16	9104847	9113181	AC087190.3|ENST00000574616.2	+	9104847	9113181	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	134612933	134612989	134612937	-	High_confidence	26	26	109	3.610338	4.917306	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606737	134613086	SAR1B|ENST00000502539.5	-	134606737,134608371,134609570,134612690,134613009	134607066,134608503,134609674,134612756,134613086	0.587156
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	28291880	28291881	28291880	+	RAMPAGE_only	5	8	8	0.264979	3.000000	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28297100	28319773	CMC1|ENST00000467644.5	+	28297100,28298218,28316332,28319508	28297161,28298350,28316423,28319773	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	86395146	86395181	86395173	+	High_confidence	6	6	30	0.993671	4.349192	chr11	86395046	86395200	DNA|TcMar-Mariner|MARNA	+	chr11	86395173	86423109	CCDC81|ENST00000528728.1	+	86395173,86397620,86400677,86407613,86409260,86412386,86414788,86415092,86419927,86422573	86395413,86397742,86400801,86407701,86409365,86412559,86414867,86415313,86420053,86423109	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	44984294	44984325	44984307	+	High_confidence	6	7	28	0.927426	4.137538	chr19	44984292	44984595	LINE|L2|L2a	-	chr19	44984286	44987390	CLPTM1|ENST00000589158.1	+	44984286,44985217,44986454,44987178	44984616,44985303,44986575,44987390	0.964286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	107266313	107266314	107266313	+	RAMPAGE_only	110	116	126	4.173419	5.115164	chr4	107265946	107266484	LTR|ERVL|MLT2F	+	chr4	107258699	107301870	AC104663.1|ENST00000508555.1	+	107258699,107301488	107258874,107301870	0.920635
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr18	64192652	64192680	64192679	-	RAMPAGE_only	4	6	13	0.430591	3.251629	chr18	64192338	64192663	LTR|ERVL|LTR50	-	chr18	64181313	64259994	LINC01538|ENST00000649058.1	-	64181313,64192523,64258217,64259914	64181759,64192822,64258519,64259994	0.538462
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	84368670	84368721	84368670	-	High_confidence	8	8	21	0.695570	4.201841	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	76372220	76372242	76372230	-	RAMPAGE_only	3	3	10	0.331224	2.947703	chr17	76372164	76372727	LINE|L1|L1MB5	-	chr17	76330482	76353628	PRPSAP1|ENST00000494662.5	-	76330482,76332262,76344670,76348528,76353533	76330666,76332435,76344737,76348581,76353628	0.700000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	79455514	79455548	79455514	-	High_confidence	2	2	8	0.264979	2.807355	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	100834697	100834708	100834707	+	High_confidence	10	10	19	0.629325	3.794653	chr14	100834648	100834738	LINE|L2|L2b	+	chr14	100833763	100861021	MEG3|ENST00000524035.5	+	100833763,100836166,100845457,100860690	100836075,100836300,100845533,100861021	0.947368
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	53456881	53456889	53456888	+	RAMPAGE_only	12	15	24	0.794937	4.229871	chr16	53456559	53457052	LINE|L2|L2a	+	chr16	53461768	53480755	MSTRG.9116.5	+	53461768,53462551,53464225,53465437,53469915,53470382,53470745,53479153,53479885,53480566	53461850,53463519,53464363,53467169,53470185,53470663,53470922,53479225,53479991,53480755	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	135965723	135965765	135965723	+	High_confidence	43	59	233	7.717512	6.105227	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.974249
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	189309866	189309889	189309866	+	High_confidence	6	7	20	0.662447	2.752855	chr3	189309787	189309871	LINE|RTE-BovB|MamRTE1	+	chr3	189309893	189315595	TPRG1|ENST00000481307.1	+	189309893,189310385,189315492	189310177,189310539,189315595	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	235865138	235865165	235865164	-	RAMPAGE_only	3	3	11	0.364346	3.121928	chr1	235864944	235865509	LINE|L2|L2a	+	chr1	235829408	235866876	LYST|ENST00000468626.2	-	235829408,235833577,235866842	235830424,235833667,235866876	0.636364
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	38004724	38004736	38004735	+	High_confidence	3	3	7	0.231857	2.584963	chr15	38003252	38004953	LINE|L1|L1M1	-	chr15	38004745	38025018	LINC02345|ENST00000557883.2	+	38004745,38020191,38024680	38004832,38020532,38025018	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	201427175	201427176	201427175	-	RAMPAGE_only	53	53	53	1.755486	5.109904	chr1	201427119	201427295	SINE|MIR|MIR	-	chr1	201408863	201429866	TNNI1|ENST00000336092.8	-	201408863,201410325,201411356,201413031,201414517,201415212,201417115,201417782,201421672,201427174,201428837,201429698	201409250,201410435,201411533,201413121,201414649,201415254,201417119,201417812,201421726,201427293,201429274,201429866	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	36584210	36584221	36584213	-	High_confidence	8	8	20	0.662447	3.721928	chr2	36584029	36584427	LTR|ERVL|LTR33	+	chr2	36555682	36584058	FEZ2|ENST00000464964.1	-	36555682,36558437,36578596,36581289,36583352,36584029	36555748,36558513,36578865,36581431,36583469,36584058	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	42925623	42925633	42925632	-	High_confidence	7	7	12	0.397468	3.084963	chr21	42925506	42925876	LTR|ERV1|MER48	-	chr21	42916802	42925646	ERVH48-1|ENST00000447535.1	-	42916802,42925345	42919291,42925646	0.916667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	9869585	9869594	9869593	-	High_confidence	5	5	11	0.364346	3.095795	chr12	9869538	9869722	DNA|hAT-Charlie|MER105	-	chr12	9856900	9869386	CLEC2B|ENST00000540743.1	-	9856900,9862498,9869204	9857637,9862573,9869386	0.545455
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	150433712	150433750	150433729	+	High_confidence	28	35	91	3.014136	6.043348	chr7	150433631	150433743	LINE|CR1|CR1_Mam	-	chr7	150433729	150442892	MSTRG.21680.2	+	150433729,150435029	150433829,150442892	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	2990740	2990755	2990748	-	RAMPAGE_only	9	12	27	0.894304	3.898613	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	106541105	106541114	106541113	+	High_confidence	11	14	34	1.126161	4.594672	chr6	106541083	106541354	DNA|hAT-Charlie|MER102c	-	chr6	106541133	106555897	CRYBG1|ENST00000457437.1	+	106541133,106541585,106543439,106544570,106544787,106551851,106552183,106553454,106555767	106541295,106541621,106543597,106544697,106544933,106551978,106552216,106553567,106555897	0.941176
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	9568962	9568982	9568962	+	RAMPAGE_only	4	5	10	0.331224	2.646439	chr12	9568603	9569205	LTR|ERV1|HERVE-int	-	chr12	9557313	9576275	AC092821.1|ENST00000520314.2	+	9557313,9558368,9559174,9560109,9560816,9565091,9567489,9570765,9571460,9573002,9573465,9574846	9557580,9558452,9559348,9560191,9564325,9565303,9569202,9570892,9571573,9573093,9573534,9576275	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	7555304	7555348	7555304	-	RAMPAGE_only	14	17	79	2.616667	4.925705	chr7	7555240	7555694	LTR|ERVL|LTR16A	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.974684
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	222737198	222737225	222737215	+	High_confidence	23	36	85	2.815401	5.790224	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737215	222750805	FAM177B|ENST00000391880.6	+	222737215,222737877,222746530,222747014,222748960,222749920	222737322,222738021,222746719,222747081,222749562,222750805	0.682353
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	2759957	2759972	2759957	+	High_confidence	2	2	7	0.231857	2.584963	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2760032	2762211	SRRM2|ENST00000572952.1	+	2760032,2761560	2760499,2762211	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	6582139	6582172	6582139	-	High_confidence	3	3	12	0.397468	2.845351	chr12	6581880	6582102	SINE|Alu|AluSx1	-	chr12	6570190	6581343	CHD4|ENST00000644652.1	-	6570190,6570868,6573073,6577784,6578028,6578408,6578845,6580581,6581043,6581290	6570693,6571032,6573269,6577917,6578137,6578546,6578917,6580699,6581173,6581343	0.916667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	46338794	46338798	46338794	+	RAMPAGE_only	2	3	7	0.231857	2.584963	chr11	46338709	46338886	SINE|MIR|MIRb	+	chr11	46345266	46380554	DGKZ|NM_201533.3	+	46345266,46367290,46367654,46368001,46369493,46369940,46371312,46371486,46371703,46372074,46372427,46372616,46372770,46372960,46374156,46374398,46374603,46374765,46374933,46375431,46375850,46376065,46376327,46376523,46377072,46378197,46378456,46378990,46379202,46379468,46379830	46345585,46367399,46367747,46368079,46369550,46370009,46371384,46371603,46371775,46372170,46372510,46372677,46372884,46373101,46374235,46374454,46374666,46374839,46375045,46375631,46375951,46376145,46376397,46376564,46377212,46378229,46378500,46379111,46379236,46379568,46380554	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	11351608	11351637	11351636	-	RAMPAGE_only	9	9	23	0.761815	4.175736	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.565217
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	246417412	246417413	246417412	-	High_confidence	8	8	9	0.298101	2.750000	chr1	246417275	246418033	LTR|ERV1|LTR8B	-	chr1	245749339	246417412	SMYD3|NM_022743.2	-	245749339,245764040,245858495,245863798,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246417295	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246417412	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	39819960	39819976	39819975	+	RAMPAGE_only	3	5	11	0.364346	3.095795	chr6	39819646	39819981	LTR|ERVL-MaLR|MLT1A0	-	chr6	39793017	39904872	DAAM2|ENST00000398904.6	+	39793017,39856246,39860927,39864432,39864979,39867509,39868822,39870339,39871505,39873237,39875329,39878202,39878403,39879177,39883961,39887485,39888678,39891340,39891633,39896811,39897174,39898876,39900076,39901301,39901812	39793143,39856470,39861017,39864507,39865074,39867843,39868933,39870443,39871572,39873355,39875468,39878261,39878588,39879477,39884069,39887592,39888763,39891447,39891722,39896980,39897282,39898937,39900208,39901472,39904872	0.909091
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	76766396	76766397	76766396	+	RAMPAGE_only	18	18	18	0.596203	3.947703	chr12	76766342	76766508	SINE|MIR|MIRb	+	chr12	76764572	76809763	ZDHHC17|ENST00000549682.5	+	76764572,76797433,76805316,76809042,76809712	76764812,76797537,76805439,76809120,76809763	0.722222
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	143039246	143039267	143039266	+	High_confidence	7	8	27	0.894304	4.103910	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.592593
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	48479540	48479551	48479540	-	High_confidence	4	4	8	0.264979	2.500000	chr3	48479425	48479570	LINE|L1|L1M4	+	chr3	48469359	48479559	SHISA5|ENST00000486344.5	-	48469359,48469727,48479176	48469573,48469843,48479559	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	36757385	36757400	36757399	-	High_confidence	4	4	10	0.331224	3.121928	chr6	36757386	36757542	SINE|MIR|MIRc	-	chr6	36740777	36757409	CPNE5|NM_001314020.1	-	36740777,36743688,36744267,36745047,36745387,36746395,36748220,36756244,36757284	36742486,36743762,36744325,36745150,36745515,36746577,36748267,36756298,36757409	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	73943913	73943914	73943913	+	High_confidence	12	12	12	0.397468	3.251629	chrX	73943785	73943965	SINE|MIR|MIRc	+	chrX	73944341	74000491	JPX|ENST00000414209.5	+	73944341,73944583,73946998,73998767,73998953	73944465,73944662,73947374,73998844,74000491	0.583333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	150567287	150567288	150567287	+	High_confidence	4	4	6	0.198734	2.584963	chr7	150567129	150567290	DNA|hAT-Charlie|MER3	-	chr7	150567276	150573955	GIMAP4|ENST00000255945.3	+	150567276,150569887,150572128	150567437,150569959,150573955	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	240022172	240022246	240022172	-	RAMPAGE_only	4	4	45	1.490507	3.241396	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.933333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	78620056	78620057	78620056	+	High_confidence	33	46	46	1.523629	5.088779	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.826087
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	8681676	8681677	8681676	+	High_confidence	65	65	89	2.947891	5.947846	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.584270
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	69265806	69265876	69265806	+	RAMPAGE_only	3	3	25	0.828059	3.121654	chr12	69265598	69265905	SINE|Alu|AluSp	-	chr12	69251174	69274358	MSTRG.5424.9	+	69251174,69253050,69256696,69258589,69259427	69251338,69253154,69258145,69259094,69274358	0.960000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	100291409	100291419	100291418	-	RAMPAGE_only	6	7	19	0.629325	3.947703	chr10	100291357	100291454	SINE|MIR|MIR1_Amn	+	chr10	100288145	100330486	PKD2L1|NM_001253837.1	-	100288145,100288971,100290014,100290400,100291300,100292947,100293280,100294534,100294941,100296121,100296979,100297381,100298561,100299590,100329210,100329868	100288478,100289056,100290138,100290519,100291427,100293069,100293379,100294655,100295123,100296292,100297208,100297606,100298815,100299718,100329346,100330486	0.526316
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	218287266	218287306	218287279	-	High_confidence	16	16	42	1.391140	4.900116	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.595238
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	113149840	113149871	113149850	-	RAMPAGE_only	4	5	19	0.629325	3.947703	chr5	113149690	113150736	LINE|L1|HAL1M8	+	chr5	113101499	113122830	MCC|ENST00000502648.5	-	113101499,113104191,113122683	113101945,113104355,113122830	0.684211
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	81154201	81154222	81154221	-	High_confidence	5	5	17	0.563080	3.616875	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.823529
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	44914321	44914322	44914321	+	High_confidence	228	229	259	8.578694	5.669519	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.868726
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	91241962	91241963	91241962	+	High_confidence	4	4	6	0.198734	2.584963	chr14	91241759	91242172	LINE|L2|L2a	-	chr14	91242758	91250835	AL135818.1|ENST00000553725.5	+	91242758,91244354,91250764	91243013,91244499,91250835	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	72100409	72100422	72100421	-	High_confidence	5	6	9	0.298101	3.000000	chr3	72100285	72100568	DNA|hAT-Charlie|MER102b	-	chr3	72035299	72100427	LINC00877|ENST00000468646.6	-	72035299,72055860,72059686,72060509,72060802,72099903,72100168	72036520,72055962,72060109,72060611,72061094,72100010,72100427	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	54617347	54617348	54617347	+	High_confidence	9	11	11	0.364346	3.277613	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	17045247	17045271	17045255	-	High_confidence	4	4	12	0.397468	3.277613	chr1	17045024	17045325	LINE|L2|L2c	-	chr1	17023972	17045219	SDHB|ENST00000491274.5	-	17023972,17027748,17028599,17033059,17044760,17045140	17024074,17027865,17028736,17033145,17044888,17045219	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	12800944	12801038	12800944	-	High_confidence	9	9	65	2.152954	4.674925	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.969231
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	100035528	100035543	100035528	+	RAMPAGE_only	4	4	12	0.397468	3.022055	chr7	100035147	100035840	LINE|RTE-BovB|MamRTE1	+	chr7	100023407	100041688	ZKSCAN1|ENST00000620510.1	+	100023407,100023551,100024153,100029860,100030248,100033304	100023461,100023932,100024307,100029952,100030375,100041688	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	20674497	20674512	20674497	+	High_confidence	27	28	45	1.490507	4.457868	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.755556
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	37893830	37893872	37893871	-	RAMPAGE_only	14	14	24	0.794937	3.153572	chr1	37893462	37893926	LINE|L2|L2c	+	chr1	37885508	37888344	INPP5B|ENST00000467066.1	-	37885508,37886887,37887350,37888242	37885825,37887004,37887465,37888344	0.958333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	40381330	40381376	40381352	+	RAMPAGE_only	3	4	13	0.430591	3.418296	chr1	40381190	40381531	LINE|L2|L2c	-	chr1	40373696	40415369	MSTRG.653.4	+	40373696,40399592,40408652,40409756,40413015,40414158,40415271	40399258,40406869,40408738,40409835,40413102,40414240,40415369	0.846154
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr18	35467080	35467118	35467080	-	High_confidence	43	46	106	3.510971	6.233915	chr18	35467057	35467118	DNA|hAT-Charlie|MER5A	-	chr18	35445742	35467081	AC007998.3|ENST00000591141.1	-	35445742,35446874,35466623	35445900,35446955,35467081	0.556604
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	32613862	32613863	32613862	+	High_confidence	8	8	9	0.298101	3.000000	chr15	32613860	32614055	LINE|CR1|L3	+	chr15	32613732	32615111	AC123768.2|ENST00000500941.2	+	32613732,32614108,32614739	32613998,32614202,32615111	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	155343321	155343322	155343321	-	RAMPAGE_only	5	5	7	0.231857	2.584963	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	86453149	86453203	86453184	-	High_confidence	23	38	251	8.313715	6.785160	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016014	86453185	MAPK10|ENST00000641634.1	-	86016014,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194318,86354529,86429677,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86429805,86453185	0.677291
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	28538668	28538691	28538686	-	High_confidence	12	19	47	1.556751	4.586189	chr16	28538407	28538698	SINE|Alu|AluJo	+	chr16	28532707	28539174	NUPR1|ENST00000324873.7	-	28532707,28538005,28538795	28537669,28538155,28539174	0.957447
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	101298298	101298309	101298298	+	RAMPAGE_only	14	16	23	0.761815	4.061482	chr12	101298161	101298637	LINE|L2|L2a	-	chr12	101280126	101386619	UTP20|NM_014503.2	+	101280126,101281115,101285569,101285748,101286320,101288959,101290136,101290732,101291741,101291969,101293167,101295479,101299681,101299972,101302447,101305914,101306698,101308184,101309762,101311718,101312035,101317477,101319544,101320851,101321503,101327080,101329240,101333300,101334424,101338050,101338812,101340522,101342445,101342786,101342940,101344594,101345553,101346450,101352054,101353046,101354831,101356553,101356925,101361961,101363575,101365458,101366557,101367859,101369720,101370431,101371057,101372883,101373400,101373584,101374807,101375623,101379370,101381139,101383040,101383542,101385582,101385967	101280327,101281196,101285636,101285881,101286509,101289041,101290274,101290888,101291888,101292104,101293245,101295658,101299837,101300061,101302553,101306065,101306761,101308343,101309839,101311798,101312276,101317663,101319635,101320937,101321629,101327247,101329449,101333444,101334504,101338277,101338957,101340610,101342589,101342837,101343093,101344750,101345694,101346588,101352194,101353129,101355118,101356693,101357082,101362060,101363743,101365625,101366699,101367976,101369891,101370563,101371168,101372963,101373470,101373767,101374939,101375756,101379558,101381211,101383313,101383669,101385728,101386619	0.521739
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	11194708	11194727	11194708	+	RAMPAGE_only	7	11	30	0.993671	4.593069	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	15001807	15001826	15001810	+	High_confidence	13	15	36	1.192405	4.712319	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.555556
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	33931121	33931125	33931121	+	High_confidence	4	4	8	0.264979	2.521641	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931121	33938372	LINC00649|NR_134559.1	+	33931121,33938224	33931742,33938372	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	40772059	40772060	40772059	+	RAMPAGE_only	66	66	67	2.219199	4.226403	chr19	40771932	40772225	SINE|Alu|AluJo	-	chr19	40775176	40777493	MIA|NM_001202553.1	+	40775176,40775536,40775751,40776968,40777396	40775211,40775669,40775885,40777079,40777493	0.985075
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	196404228	196404273	196404264	-	RAMPAGE_only	13	13	57	1.887975	5.188067	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225782	196465387	KCNT2|ENST00000498426.5	-	196225782,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196317173,196331155,196333846,196340340,196342078,196373139,196398562,196423049,196425851,196428104,196429576,196465292	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196317269,196331261,196334060,196340570,196342228,196373248,196398671,196423113,196425988,196428269,196429757,196465387	0.631579
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	7575264	7575284	7575283	-	RAMPAGE_only	6	6	19	0.629325	4.037401	chr12	7575005	7575582	LINE|L1|L1MB8	+	chr12	7470812	7503893	CD163|ENST00000359156.8	-	7470812,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7503644	7471397,7479996,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7503893	0.789474
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	3062922	3062983	3062922	-	High_confidence	23	25	99	3.279115	5.472116	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.979798
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	99893444	99893445	99893444	-	High_confidence	8	8	8	0.264979	2.500000	chr8	99893204	99893422	SINE|MIR|MIRb	-	chr8	99878148	99893622	COX6C|ENST00000520271.5	-	99878148,99887489,99891907,99893442	99878265,99887618,99892052,99893622	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	146222370	146222437	146222432	-	High_confidence	9	12	49	1.622996	5.241962	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146200008	146222433	PLSCR4|ENST00000481701.5	-	146200008,146201034,146206525,146220814,146222064,146222199	146200039,146201077,146206761,146220925,146222092,146222433	0.816327
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	95713494	95713522	95713521	+	RAMPAGE_only	82	93	208	6.889453	5.364127	chr5	95713280	95713670	LTR|ERVL-MaLR|MSTA	+	chr5	95717632	95756093	RHOBTB3|ENST00000504949.1	+	95717632,95731858,95736888,95748332,95752238,95755395	95717765,95732084,95737075,95748487,95752350,95756093	0.836538
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	172854659	172854679	172854671	+	RAMPAGE_only	2	2	7	0.231857	2.584963	chr5	172854401	172854991	DNA|TcMar-Tigger|MER6A	+	chr5	172834274	172952685	ERGIC1|ENST00000393784.7	+	172834274,172888698,172897001,172909666,172914713,172924004,172926508,172932435,172935187,172950708	172834433,172888760,172897074,172909761,172914838,172924109,172926569,172932536,172935310,172952685	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	136489429	136489430	136489429	+	High_confidence	20	23	29	0.960549	4.384517	chr8	136489231	136489726	LTR|ERV1|MER61F	+	chr8	136489447	136529876	LINC02055|ENST00000523232.1	+	136489447,136515965,136519147,136529794	136489502,136516300,136519239,136529876	0.793103
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	65431154	65431199	65431198	+	RAMPAGE_only	5	5	20	0.662447	3.616349	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.950000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	12522673	12522683	12522682	+	RAMPAGE_only	4	6	11	0.364346	2.921928	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.909091
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	28234026	28234048	28234026	-	RAMPAGE_only	8	8	46	1.523629	4.566190	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	35432496	35432508	35432496	-	High_confidence	2	2	8	0.264979	2.807355	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	117454948	117454966	117454949	+	High_confidence	26	33	63	2.086709	5.252426	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.952381
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	77285030	77285037	77285036	-	RAMPAGE_only	3	3	8	0.264979	2.521641	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	91742167	91742168	91742167	-	RAMPAGE_only	7	9	9	0.298101	2.947703	chr9	91742006	91742402	LTR|ERVL-MaLR|THE1A	-	chr9	91722601	91887199	ROR2|ENST00000550066.5	-	91722601,91726540,91730909,91733121,91737390,91756070,91757271,91775740,91883257,91886667,91886863	91725107,91726743,91731155,91733436,91737518,91756101,91757559,91775818,91883383,91886770,91887199	0.888889
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	74254226	74254487	74254486	-	RAMPAGE_only	8	8	143	4.736499	5.282779	chrX	74254333	74256146	LTR|ERV1|HUERS-P3b-int	+	chrX	74209975	74292529	MSTRG.23896.12	-	74209975,74218620,74280930,74281701,74292426	74218577,74280494,74281085,74281848,74292529	0.993007
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	106561950	106561951	106561950	-	High_confidence	23	23	26	0.861182	4.483856	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.576923
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	50757112	50757130	50757129	+	High_confidence	6	6	20	0.662447	3.932138	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.700000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	71547376	71547393	71547376	+	RAMPAGE_only	4	4	8	0.264979	2.807355	chrX	71547285	71547497	DNA|hAT-Charlie|MER103C	-	chrX	71533299	71557047	MSTRG.23882.5	+	71533299,71536177,71537828,71544566,71554512,71555189,71555953,71556679,71556951	71533336,71536358,71538072,71548023,71554592,71555385,71556094,71556780,71557047	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	9700673	9700674	9700673	-	High_confidence	23	26	27	0.894304	4.209867	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.814815
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	42524977	42524978	42524977	+	RAMPAGE_only	4	5	6	0.198734	2.584963	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42513913	42581440	SLC37A1|ENST00000352133.2	+	42513913,42518276,42525775,42534697,42535471,42539511,42542403,42543435,42547102,42554061,42558957,42562077,42563814,42564707,42565826,42566984,42568359,42574817,42579735,42580344	42514717,42518510,42525857,42534830,42535550,42539647,42542480,42543602,42547140,42554142,42559089,42562168,42563877,42564793,42565875,42567058,42568438,42574915,42579800,42581440	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	49539145	49539166	49539145	+	RAMPAGE_only	3	3	14	0.463713	3.378783	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49527617	49543638	RCN3|ENST00000270645.7	+	49527617,49528466,49534192,49537032,49539118,49542552,49543105	49528058,49528714,49534395,49537205,49539179,49542752,49543638	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	217842173	217842195	217842173	-	High_confidence	15	16	45	1.490507	4.987730	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	8681719	8681737	8681719	+	High_confidence	3	3	8	0.264979	2.521641	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681690	8783095	RIMKLB|ENST00000544257.5	+	8681690,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783095	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	182390237	182390263	182390237	-	High_confidence	2	2	10	0.331224	2.725481	chr1	182389985	182390241	SINE|Alu|AluSx	+	chr1	182382893	182390304	GLUL|ENST00000491322.1	-	182382893,182388571	182387292,182390304	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr15	65642904	65642934	65642906	+	High_confidence	14	25	91	3.014136	5.672604	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	0.956044
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	238909323	238909324	238909323	+	RAMPAGE_only	7	7	10	0.331224	2.725481	chr2	238909324	238909392	LINE|L2|L2	+	chr2	238848031	238910548	TWIST2|NM_001271893.3	+	238848031,238909841	238848733,238910548	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	40082433	40082448	40082447	+	RAMPAGE_only	2	2	7	0.231857	2.584963	chr22	40082185	40084512	LINE|L2|L2a	-	chr22	40045473	40323360	TNRC6B|ENST00000402203.5	+	40045473,40117054,40125771,40156114,40246014,40251178,40261831,40270121,40273424,40277076,40277998,40279994,40285644,40300454,40300909,40301149,40308511,40310816,40312504,40312901,40315282,40315941,40321089,40322853	40045588,40117128,40125862,40156182,40246102,40251200,40262173,40270280,40273600,40277151,40278044,40280143,40285770,40300586,40301005,40301333,40308649,40310993,40312651,40312997,40315507,40316012,40321229,40323360	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	158167205	158167209	158167208	-	RAMPAGE_only	3	3	8	0.264979	2.521641	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158124579	158172566	FAM198B|NM_016613.6	-	158124579,158130785,158155610,158170465,158172338	158127614,158131012,158155825,158171599,158172566	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	80231057	80231058	80231057	-	High_confidence	8	8	8	0.264979	2.750000	chr14	80230830	80231256	LTR|ERVL|MLT2A1	-	chr14	80197524	80231054	DIO2|NM_000793.5	-	80197524,80211250,80215971,80230900	80203288,80211525,80216150,80231054	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	37101549	37101554	37101553	-	RAMPAGE_only	5	8	15	0.496836	3.324863	chr2	37101194	37101980	LINE|L1|L1MC5a	+	chr2	37099209	37157047	EIF2AK2|ENST00000233057.8	-	37099209,37107473,37109193,37114730,37119958,37122505,37126288,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687,37148856,37156907	37107395,37107527,37109295,37114859,37120139,37122664,37126411,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147822,37149023,37157047	0.933333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	47067498	47067534	47067498	-	High_confidence	196	206	798	26.431652	6.140198	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.916040
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	2205780	2205851	2205823	+	High_confidence	8	8	79	2.616667	4.433779	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	7502565	7502566	7502565	-	High_confidence	4	4	7	0.231857	2.807355	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	30377180	30377192	30377191	-	High_confidence	3	3	8	0.264979	2.750000	chr13	30377180	30377360	DNA|hAT-Charlie|MER5A	+	chr13	30357741	30377145	LINC00426|ENST00000420219.5	-	30357741,30358253,30363160,30372284,30375466,30376826	30357889,30358376,30363226,30372374,30375776,30377145	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	44439853	44439897	44439896	-	High_confidence	10	11	27	0.894304	4.282484	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421126	44439917	C3orf86|ENST00000636468.1	-	44421126,44439796	44421813,44439917	0.518519
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	159681539	159681550	159681539	-	RAMPAGE_only	3	3	12	0.397468	3.188722	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	123060156	123060256	123060168	-	High_confidence	27	29	184	6.094516	5.308912	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.652174
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	26474343	26474348	26474345	+	RAMPAGE_only	24	29	47	1.556751	4.702379	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.787234
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	71547455	71547501	71547455	+	RAMPAGE_only	4	4	18	0.596203	3.130718	chrX	71547285	71547497	DNA|hAT-Charlie|MER103C	-	chrX	71533299	71557047	MSTRG.23882.5	+	71533299,71536177,71537828,71544566,71554512,71555189,71555953,71556679,71556951	71533336,71536358,71538072,71548023,71554592,71555385,71556094,71556780,71557047	0.944444
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	124673331	124673382	124673381	-	High_confidence	5	5	20	0.662447	3.721928	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	51350335	51350382	51350381	-	RAMPAGE_only	3	3	13	0.430591	3.022055	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.923077
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	106270252	106270278	106270252	-	RAMPAGE_only	2	2	15	0.496836	3.378783	chr7	106270098	106270260	LINE|RTE-X|L4_B_Mam	+	chr7	106248284	106284887	MSTRG.21388.1	-	106248284,106253016,106254363,106267880,106269153,106274945,106277022,106284827	106251193,106253151,106267551,106268600,106272658,106275049,106277179,106284887	0.933333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	55678461	55678462	55678461	+	RAMPAGE_only	8	8	10	0.331224	2.947703	chr19	55678409	55678486	LINE|L2|L2c	-	chr19	55676624	55695441	EPN1|ENST00000411543.6	+	55676624,55677549,55678526,55685395,55688869,55689866,55691753,55692685,55692950,55694725,55695147	55677218,55677734,55678855,55685645,55688994,55689950,55692057,55692796,55693037,55694983,55695441	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	96638011	96638017	96638016	-	High_confidence	4	4	11	0.364346	2.721928	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.818182
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	74211066	74211084	74211066	-	RAMPAGE_only	3	3	7	0.231857	2.807355	chrX	74211024	74211772	LINE|L1|L1ME1	+	chrX	74209975	74213660	Z83843.1|ENST00000604070.1	-	74209975	74213660	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	100715407	100715410	100715407	+	RAMPAGE_only	7	8	16	0.529958	3.875000	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	102973485	102973526	102973485	+	High_confidence	8	8	32	1.059916	4.601410	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102973521	102988856	NFE4|ENST00000420058.1	+	102973521,102978380,102988032,102988374	102973771,102978520,102988232,102988856	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	997318	997319	997318	-	High_confidence	4	5	7	0.231857	2.521641	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	121974531	121974537	121974531	-	High_confidence	7	8	19	0.629325	3.572431	chr10	121974357	121974506	DNA|hAT-Charlie|MER5A	-	chr10	121959364	121974285	NSMCE4A|ENST00000468209.5	-	121959364,121959500,121960357,121961422,121963237,121965285,121967654,121970938,121974003	121959410,121959595,121960406,121961517,121963328,121965385,121967806,121971069,121974285	0.947368
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	128921939	128921961	128921939	+	High_confidence	2	3	7	0.231857	2.584963	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	91178974	91178977	91178974	-	High_confidence	5	5	9	0.298101	2.750000	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91143276	91178646	DCN|NM_133506.3	-	91143276,91164604,91178341	91146252,91164717,91178646	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	33864081	33864126	33864081	+	RAMPAGE_only	3	3	17	0.563080	2.939829	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	40350596	40350597	40350596	-	RAMPAGE_only	12	12	13	0.430591	3.251629	chr13	40350403	40350604	SINE|MIR|MIR3	+	chr13	40284776	40403766	LINC00598|ENST00000636192.1	-	40284776,40343956,40350108,40403598	40285666,40344205,40350302,40403766	0.769231
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	2798793	2798822	2798793	+	High_confidence	2	2	7	0.231857	2.521641	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	69425677	69425709	69425689	+	High_confidence	6	6	45	1.490507	3.935429	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425689	69429621	AP000439.3|ENST00000545202.1	+	69425689,69427362	69425806,69429621	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	13814178	13814194	13814178	+	High_confidence	2	2	8	0.264979	2.521641	chr20	13814082	13814204	SINE|MIR|MIR	-	chr20	13814076	13817228	NDUFAF5|ENST00000476200.5	+	13814076,13816462,13816874,13817117	13814515,13816546,13816957,13817228	0.875000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr9	120534000	120534050	120534028	-	RAMPAGE_only	9	10	54	1.788608	5.336319	chr9	120533823	120534313	LINE|L2|L2c	+	chr9	120518599	120532555	CDK5RAP2|ENST00000482047.1	-	120518599,120524985,120527805,120528743,120529977,120532466	120518645,120525078,120527925,120528797,120530140,120532555	0.574074
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	120143500	120143501	120143500	+	RAMPAGE_only	161	161	166	5.498313	5.863487	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120036235	120146854	RHOXF1-AS1|ENST00000553843.5	+	120036235,120120851,120138997,120143722,120145637	120036532,120121139,120139119,120143900,120146854	0.969880
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	70947808	70947811	70947808	-	RAMPAGE_only	8	10	22	0.728692	3.939471	chr17	70947384	70948869	LINE|L1|L1PB1	+	chr17	70778603	70779230	AC007423.1|ENST00000605009.1	-	70778603	70779230	0.681818
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	39941977	39942028	39942027	+	High_confidence	21	21	129	4.272786	6.343483	chr6	39941788	39942313	LTR|ERVL-MaLR|MLT1F1	+	chr6	39941980	39958958	MSTRG.19900.2	+	39941980,39947505,39948429,39953047	39942244,39947565,39948503,39958958	0.744186
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	74715689	74715690	74715689	+	High_confidence	6	6	8	0.264979	2.750000	chr5	74715734	74716041	SINE|Alu|AluSx1	+	chr5	74715585	74721288	HEXB|ENST00000513336.5	+	74715585,74718290,74718796,74720427,74720642,74721117	74715690,74718363,74718971,74720518,74720747,74721288	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	78600124	78600130	78600129	+	RAMPAGE_only	4	4	8	0.264979	3.000000	chr4	78599930	78600224	LTR|ERV1|MER92A	-	chr4	78601863	78610451	ANXA3|ENST00000503776.2	+	78601863,78610055	78604399,78610451	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	212233398	212233425	212233406	-	RAMPAGE_only	10	10	26	0.861182	4.084963	chr1	212233221	212233468	LINE|CR1|L3b	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	0.923077
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	141530064	141530067	141530064	-	RAMPAGE_only	5	5	12	0.397468	3.095795	chr5	141529801	141530088	SINE|Alu|AluJb	+	chr5	141528544	141534488	DIAPH1|ENST00000494967.5	-	141528544,141528701,141529171,141529602,141534334	141528582,141528941,141529273,141529697,141534488	0.500000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr18	46087042	46087222	46087042	-	High_confidence	11	11	75	2.484178	5.745290	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.706667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	18010632	18010660	18010653	+	RAMPAGE_only	3	3	12	0.397468	3.418296	chr8	18010700	18010985	SINE|Alu|AluSg	+	chr8	18013827	18027758	PCM1|ENST00000519802.5	+	18013827,18014583,18025360,18025543,18027636	18014036,18014840,18025453,18025658,18027758	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	40381235	40381236	40381235	+	RAMPAGE_only	10	13	15	0.496836	3.373557	chr1	40381190	40381531	LINE|L2|L2c	-	chr1	40374647	40423326	SMAP2|ENST00000372708.5	+	40374647,40406735,40408652,40409756,40413015,40414158,40415271,40416175,40416779,40421975	40374708,40406869,40408738,40409835,40413102,40414240,40415381,40416341,40417096,40423326	0.733333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	36505070	36505091	36505090	-	RAMPAGE_only	6	6	16	0.529958	3.577820	chr6	36505057	36505226	DNA|hAT-Charlie|MER5B	+	chr6	36493891	36547470	STK38|ENST00000229812.7	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540207,36547470	0.625000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	62056832	62056857	62056853	+	RAMPAGE_only	3	3	13	0.430591	3.251629	chr10	62056749	62056941	DNA|hAT-Charlie|MER58A	+	chr10	62049210	62096948	ARID5B|NM_001244638.1	+	62049210,62050887,62057116,62059242,62069699,62085701,62090861	62049483,62051000,62057318,62059295,62069797,62085900,62096948	0.923077
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr14	90258074	90258080	90258074	+	RAMPAGE_only	4	4	8	0.264979	3.000000	chr14	90258077	90258330	SINE|MIR|MIRb	+	chr14	90256577	90272550	PSMC1|ENST00000543772.2	+	90256577,90259159,90263317,90263661,90264040,90265069,90268223,90269396,90270197,90272272	90256600,90259213,90263442,90263847,90264169,90265166,90268413,90269548,90270352,90272550	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	48868595	48868617	48868595	-	High_confidence	1006	1046	3232	107.051501	7.829663	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.991027
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	119179290	119179297	119179296	+	High_confidence	5	6	13	0.430591	3.546594	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	0.923077
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	64932619	64932620	64932619	-	High_confidence	7	7	7	0.231857	2.521641	chr2	64932619	64932698	DNA|hAT-Tip100|MER91C	+	chr2	64901839	64932447	LOC400958|NR_036586.1	-	64901839,64904990,64932344	64904620,64905135,64932447	0.571429
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr3	197299316	197299321	197299316	-	High_confidence	6	7	10	0.331224	3.121928	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	50172544	50172578	50172544	+	High_confidence	3	3	19	0.629325	3.826875	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.684211
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr16	15085653	15085684	15085653	-	RAMPAGE_only	2	2	9	0.298101	2.750000	chr16	15085367	15085615	SINE|Alu|AluJr	-	chr16	15061628	15094008	RRN3|ENST00000327307.11	-	15061628,15063195,15065218,15068168,15070069,15071120,15072949,15074722,15076557,15079997,15083512,15084641,15085638,15086128,15086364,15091314,15092508,15093951	15061905,15063283,15065371,15068277,15070254,15071251,15073080,15074861,15076650,15080096,15083582,15084705,15085698,15086258,15086454,15091371,15092614,15094008	0.777778
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr4	8436023	8436026	8436023	-	RAMPAGE_only	10	11	20	0.662447	4.142664	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.650000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	26832788	26832835	26832788	-	High_confidence	2	2	18	0.596203	3.836592	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26716161	26832786	ITPR2|ENST00000545235.1	-	26716161,26722396,26724655,26725649,26832689	26716242,26722555,26724742,26725765,26832786	0.944444
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	119420337	119420373	119420337	+	High_confidence	3	5	17	0.563080	3.750000	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119420411	119475873	MSTRG.18851.1	+	119420411,119456314,119473907,119474400,119475677,119475823	119420813,119456368,119474015,119474460,119475727,119475873	0.941176
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr21	38959445	38959448	38959445	+	High_confidence	56	56	122	4.040929	6.217140	chr21	38959250	38959684	LTR|ERVL-MaLR|MLT1C	+	chr21	38959440	38961268	MSTRG.15094.1	+	38959440	38961268	0.967213
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	116648830	116648884	116648883	-	RAMPAGE_only	4	5	27	0.894304	3.840266	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.962963
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	86417235	86417241	86417235	+	RAMPAGE_only	16	16	29	0.960549	4.593069	chr8	86417268	86417372	DNA|hAT-Charlie|MER58D	+	chr8	86380816	86448497	WWP1|ENST00000518683.5	+	86380816,86381504,86398341,86398571,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147	86380864,86381629,86398479,86398638,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448497	0.896552
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	177499689	177499720	177499695	+	RAMPAGE_only	4	4	13	0.430591	3.026987	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177392767	177538418	AGPS|ENST00000409888.1	+	177392767,177420268,177521328,177523747,177538073	177393049,177420358,177521368,177523805,177538418	0.923077
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	182928785	182928789	182928788	-	RAMPAGE_only	6	6	10	0.331224	2.947703	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182909114	183038472	NCKAP1|ENST00000361354.8	-	182909114,182926815,182928116,182928782,182930694,182934751,182935292,182942069,182952404,182952792,182953112,182956461,182957456,182962158,182964675,182967215,182976892,182978833,182981243,182982820,182983285,182986170,182989029,182994838,182995700,183001952,183002126,183002973,183003232,183023805,183037991	182925818,182926905,182928226,182928899,182930788,182934832,182935375,182942163,182952502,182952923,182953331,182956593,182957596,182962278,182964808,182967361,182976951,182978915,182981376,182982927,182983382,182986227,182989186,182994887,182995838,183002043,183002269,183003030,183003325,183023916,183038472	0.700000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	36914686	36914687	36914686	+	RAMPAGE_only	4	4	7	0.231857	2.807355	chr6	36914707	36914996	SINE|Alu|AluSz6	+	chr6	36885863	36928964	C6orf89|NM_152734.3	+	36885863,36899425,36902220,36914283,36914553,36916444,36919577,36923346	36886028,36899633,36902434,36914435,36914693,36916574,36919701,36928964	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	42175253	42175291	42175290	-	High_confidence	79	81	188	6.227006	4.500784	chr5	42175074	42175255	LTR|ERVL-MaLR|MSTC	-	chr5	42155832	42175345	LOC101926960|NR_104636.1	-	42155832,42159026,42159336,42175152	42157411,42159053,42159446,42175345	0.872340
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	54616967	54616968	54616967	+	High_confidence	8	8	10	0.331224	3.169925	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54616929	54637556	LILRB1|NM_006669.6	+	54616929,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637556	0.900000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr6	22717935	22717938	22717937	-	High_confidence	4	7	9	0.298101	2.947703	chr6	22717913	22718256	DNA|hAT-Ac|OldhAT1	-	chr6	22654159	22717924	LOC105374972|NR_134613.1	-	22654159,22717720	22654704,22717924	0.555556
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	4126960	4126972	4126960	-	RAMPAGE_only	3	4	10	0.331224	3.121928	chr17	4126672	4126993	SINE|Alu|AluSz6	+	chr17	4004444	4142959	ZZEF1|NM_015113.3	-	4004444,4008882,4009603,4013448,4014089,4014346,4016322,4017370,4017835,4019668,4021128,4022708,4024918,4032125,4032827,4034014,4042428,4044223,4049707,4050780,4051970,4054056,4056215,4057993,4059170,4062752,4064360,4066446,4067162,4070683,4072607,4074149,4075096,4075262,4076636,4076867,4077882,4081375,4082436,4085669,4086485,4087433,4088677,4090718,4095830,4096608,4102316,4104632,4105692,4109652,4112608,4114298,4116971,4123906,4142541	4006970,4008954,4009757,4013614,4014188,4014515,4016466,4017730,4017971,4019769,4021320,4022828,4025118,4032258,4033002,4034292,4042568,4044374,4049859,4051043,4052136,4054195,4056345,4058155,4059290,4062917,4064829,4066540,4067242,4070924,4072756,4074351,4075178,4075429,4076759,4076989,4078042,4081490,4082504,4085803,4086655,4087534,4088893,4090830,4095979,4096700,4102415,4104811,4105809,4109863,4112808,4114470,4117166,4124051,4142959	0.600000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr20	25025531	25025574	25025573	-	RAMPAGE_only	31	31	75	2.484178	3.407469	chr20	25025445	25026012	LTR|ERVL-MaLR|MLT1E2	-	chr20	25006229	25032706	ACSS1|NM_001252676.1	-	25006229,25009269,25012600,25012811,25013535,25013960,25015137,25020009,25021388,25022939,25023465,25030758,25032368	25007941,25009388,25012664,25012939,25013662,25014073,25015230,25020147,25021536,25023092,25023641,25030958,25032706	0.933333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	72305913	72305914	72305913	-	High_confidence	17	20	20	0.662447	3.584184	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	60887070	60887071	60887070	+	High_confidence	7	8	10	0.331224	3.121928	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	158717608	158717623	158717608	-	RAMPAGE_only	4	5	12	0.397468	2.751629	chr2	158717539	158717675	SINE|MIR|MIR	+	chr2	158678655	158723980	PKP4-AS1|ENST00000629904.2	-	158678655,158722763	158679389,158723980	0.833333
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chrX	74247385	74247420	74247406	-	RAMPAGE_only	3	3	12	0.397468	2.913977	chrX	74247312	74247442	SINE|Alu|FLAM_A	+	chrX	74209975	74292529	MSTRG.23896.12	-	74209975,74218620,74280930,74281701,74292426	74218577,74280494,74281085,74281848,74292529	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	64393180	64393184	64393180	-	RAMPAGE_only	3	3	9	0.298101	3.000000	chr17	64392994	64393185	LTR|ERV1|MER51D	+	chr17	64375175	64391280	MSTRG.10746.6	-	64375175,64377823,64390488,64390601,64391246	64375356,64378117,64390515,64390763,64391280	0.666667
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr7	102973265	102973266	102973265	-	RAMPAGE_only	31	31	42	1.391140	4.753774	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102813232	103050059	FBXL13|ENST00000436908.5	-	102813232,102822039,102832839,102854776,102877466,102878330,102883304,102883567,102884213,102913085,102926273,102931880,102963532,102968021,103025062,103027448,103028599,103029350,103046808,103050025	102813531,102822203,102832974,102854860,102877593,102878450,102883467,102883685,102884312,102913215,102926374,102931933,102963665,102968117,103025230,103027558,103028748,103029418,103047034,103050059	0.595238
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	42721166	42721167	42721166	-	High_confidence	13	13	14	0.463713	3.026987	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.928571
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr2	24887184	24887185	24887184	-	RAMPAGE_only	31	31	35	1.159283	4.734522	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24841324	24878027	ADCY3|ENST00000433852.1	-	24841324,24841555,24842253,24872569,24877921	24841386,24841667,24842384,24872719,24878027	0.800000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr17	68413739	68413763	68413739	+	High_confidence	3	3	7	0.231857	2.521641	chr17	68408123	68414142	LINE|L1|L1PA3	-	chr17	68413739	68428763	AC007780.1|ENST00000592030.1	+	68413739,68413910,68420188,68428636	68413795,68414182,68420506,68428763	0.714286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr22	18029384	18029405	18029384	+	High_confidence	14	16	37	1.225528	4.815623	chr22	18029082	18029800	LINE|CR1|L3	+	chr22	18029384	18037968	FLJ41941|NR_024417.1	+	18029384,18035759	18029554,18037968	0.783784
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	11864387	11864409	11864408	-	RAMPAGE_only	3	3	7	0.231857	2.807355	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.857143
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr8	47360804	47360819	47360804	+	High_confidence	16	16	33	1.093038	3.977143	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47440397	SPIDR|ENST00000521918.6	+	47360818,47396375,47407860,47440322	47360949,47396626,47407961,47440397	0.848485
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	12572738	12572758	12572757	-	RAMPAGE_only	7	7	21	0.695570	3.681881	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.904762
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr10	102727667	102727692	102727667	+	RAMPAGE_only	3	3	11	0.364346	2.921928	chr10	102727660	102728003	LINE|L2|L2c	-	chr10	102714540	102739189	SFXN2|NM_178858.4	+	102714540,102726611,102726986,102728430,102729318,102729722,102731722,102732151,102732858,102733553,102735861,102737662	102714681,102726797,102727157,102728529,102729394,102729808,102731783,102732218,102732908,102733603,102735909,102739189	0.545455
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	29647536	29647557	29647536	+	High_confidence	2	2	11	0.364346	3.121928	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.636364
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr13	46374832	46374833	46374832	-	RAMPAGE_only	124	125	163	5.398946	6.365556	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46371940	46378645	RUBCNL|ENST00000439642.1	-	46371940,46377889,46378446	46372597,46378005,46378645	0.711656
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr5	177431710	177431721	177431720	+	High_confidence	15	20	39	1.291772	4.594456	chr5	177431745	177431876	SINE|MIR|MIRb	+	chr5	177431710	177442064	GRK6|ENST00000515666.5	+	177431710,177432232,177432705,177433146,177433346,177433535,177433913,177434901,177435031,177436072,177436392,177440699,177440918,177441736	177432107,177432310,177432806,177433239,177433410,177433676,177434104,177434939,177435121,177436281,177436530,177440837,177441053,177442064	0.948718
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr1	91713218	91713276	91713229	-	RAMPAGE_only	14	15	35	1.159283	4.366681	chr1	91713160	91713262	DNA|hAT?|MER121	+	chr1	91682646	91718459	MSTRG.1085.6	-	91682646,91695671,91698088,91708662,91712242,91716567	91683857,91695779,91698130,91708783,91716394,91718459	0.914286
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	17823626	17823627	17823626	-	RAMPAGE_only	7	7	7	0.231857	2.521641	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr19	46350849	46350867	46350849	+	RAMPAGE_only	37	42	76	2.517300	4.810317	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.973684
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr11	58927709	58927721	58927709	+	High_confidence	4	4	8	0.264979	2.521641	chr11	58927656	58928383	LTR|ERVK|HERVK22-int	-	chr11	58927700	58956405	GLYATL1|ENST00000317391.8	+	58927700,58942539,58943542,58947045,58947857,58954769,58955175,58955609	58927829,58942584,58943666,58947165,58947965,58954896,58955353,58956405	0.750000
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr12	31121301	31121302	31121301	-	RAMPAGE_only	19	20	21	0.695570	4.037401	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.761905
thyroid_gland_female_fetal_37_weeks_and_female_fetal_40_weeks	chr18	36805389	36805409	36805392	-	RAMPAGE_only	2	2	7	0.231857	2.584963	chr18	36805277	36805349	LINE|L2|L2b	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.571429
thyroid_gland_male_adult_54_years	chrX	136222393	136222435	136222393	-	RAMPAGE_only	3	3	15	0.527668	3.664498	chrX	136222161	136222377	SINE|MIR|MIR	-	chrX	136216813	136220813	MAP7D3|ENST00000471510.1	-	136216813,136219397,136219592,136220764	136217258,136219495,136219671,136220813	0.800000
thyroid_gland_male_adult_54_years	chr5	170267243	170267254	170267253	-	High_confidence	6	7	18	0.633202	3.454822	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.944444
thyroid_gland_male_adult_54_years	chr20	63619639	63619670	63619657	-	High_confidence	8	8	21	0.738735	3.499228	chr20	63619610	63619939	LINE|L1|L1MD2	+	chr20	63587601	63619876	GMEB2|ENST00000266068.5	-	63587601,63592021,63592532,63593010,63595609,63597756,63602964,63604742,63619266	63590729,63592144,63592670,63593082,63595767,63597860,63603092,63604840,63619876	0.809524
thyroid_gland_male_adult_54_years	chr8	27977125	27977126	27977125	-	RAMPAGE_only	5	5	8	0.281423	2.521641	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.875000
thyroid_gland_male_adult_54_years	chr3	134485387	134485415	134485387	-	High_confidence	6	6	11	0.386957	2.646439	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.909091
thyroid_gland_male_adult_54_years	chr2	113184962	113184969	113184962	+	High_confidence	5	5	13	0.457312	3.584963	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.923077
thyroid_gland_male_adult_54_years	chr1	206053041	206053059	206053041	+	RAMPAGE_only	4	4	11	0.386957	2.646439	chr1	206053000	206053902	LTR|ERV1|Harlequin-int	+	chr1	206035186	206061913	STRG.6856.1	+	206035186,206041565,206051741,206053020,206061344,206061661	206035299,206041678,206052001,206060449,206061397,206061913	0.909091
thyroid_gland_male_adult_54_years	chr6	151449686	151449708	151449686	+	High_confidence	2	2	12	0.422134	3.418296	chr6	151449629	151451218	Retroposon|SVA|SVA_D	+	chr6	151449686	151450427	STRG.39146.1	+	151449686	151450427	0.916667
thyroid_gland_male_adult_54_years	chr15	88604016	88604028	88604016	+	High_confidence	3	3	12	0.422134	3.251629	chr15	88603877	88604016	DNA|hAT-Charlie|MER102b	-	chr15	88603919	88608316	STRG.76294.1	+	88603919,88604992	88604759,88608316	0.916667
thyroid_gland_male_adult_54_years	chr6	2881285	2881286	2881285	-	High_confidence	34	36	36	1.266403	4.594672	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	0.944444
thyroid_gland_male_adult_54_years	chr12	80778415	80778441	80778415	+	High_confidence	5	5	9	0.316601	2.725481	chr12	80778022	80778485	LTR|ERVL-MaLR|MLT1H	+	chr12	80778349	80781604	STRG.66012.1	+	80778349,80781440	80779045,80781604	1.000000
thyroid_gland_male_adult_54_years	chr15	24919641	24919693	24919672	+	High_confidence	22	23	133	4.678656	6.027213	chr15	24919446	24919852	LTR|ERV1|MER31A	-	chr15	24919667	24978539	STRG.73755.1	+	24919667,24920010,24920472,24921156,24962113,24967931,24974310,24975357,24976304,24976876,24977777,24978192,24978406	24919719,24920124,24920547,24921255,24962209,24968082,24974456,24975509,24976416,24977029,24977916,24978318,24978539	0.819549
thyroid_gland_male_adult_54_years	chr17	1769722	1769723	1769722	+	High_confidence	7	8	11	0.386957	3.277613	chr17	1769649	1769740	DNA|TcMar-Tigger|Tigger19a	+	chr17	1770525	1772032	SERPINF1|ENST00000570820.1	+	1770525,1771871	1771184,1772032	0.727273
thyroid_gland_male_adult_54_years	chr6	169654701	169654742	169654701	-	RAMPAGE_only	6	7	27	0.949802	4.384517	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169558320	169667275	WDR27|ENST00000546525.5	-	169558320,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197,169651929,169658275,169659085,169659450,169660662,169662303,169663562,169664165,169665485,169667135	169559927,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649275,169652008,169658358,169659207,169659518,169660766,169662424,169663649,169664286,169665556,169667275	0.555556
thyroid_gland_male_adult_54_years	chr11	287589	287602	287601	+	High_confidence	3	5	9	0.316601	3.000000	chr11	287468	287623	LINE|L2|L2b	-	chr11	288037	288987	AC136475.3|ENST00000534742.1	+	288037,288949	288811,288987	0.666667
thyroid_gland_male_adult_54_years	chr18	80147918	80147930	80147929	+	High_confidence	8	8	25	0.879447	4.243856	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80147923	80178432	PARD6G-AS1|NR_028340.1	+	80147923,80175879,80178085	80148254,80175935,80178432	0.760000
thyroid_gland_male_adult_54_years	chr2	231072232	231072255	231072254	+	RAMPAGE_only	5	6	20	0.703557	3.787144	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.950000
thyroid_gland_male_adult_54_years	chr8	39083057	39083066	39083065	+	RAMPAGE_only	14	14	24	0.844269	3.938722	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.791667
thyroid_gland_male_adult_54_years	chr20	18794063	18794086	18794085	+	High_confidence	63	63	186	6.543083	5.512389	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.978495
thyroid_gland_male_adult_54_years	chr9	123179098	123179221	123179220	-	RAMPAGE_only	13	14	48	1.688538	4.498317	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.895833
thyroid_gland_male_adult_54_years	chr14	50159437	50159473	50159437	-	RAMPAGE_only	3	3	15	0.527668	3.506891	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.933333
thyroid_gland_male_adult_54_years	chr4	2867835	2867851	2867835	+	High_confidence	17	17	45	1.583004	4.569414	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
thyroid_gland_male_adult_54_years	chr15	57402674	57402684	57402674	+	RAMPAGE_only	3	4	10	0.351779	3.121928	chr15	57402644	57402725	LINE|L2|L2a	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.800000
thyroid_gland_male_adult_54_years	chr6	31587243	31587268	31587243	+	High_confidence	2	2	11	0.386957	3.277613	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	0.727273
thyroid_gland_male_adult_54_years	chr8	91394706	91394762	91394742	+	RAMPAGE_only	5	6	23	0.809091	4.106603	chr8	91394704	91394926	SINE|MIR|MIR	-	chr8	91343029	91398138	SLC26A7|ENST00000520249.5	+	91343029,91343352,91351809,91352900,91362352,91363471,91366579,91369784,91389337,91393796,91393935,91395061	91343183,91343466,91351887,91352996,91362459,91363538,91366717,91369833,91389438,91393851,91394039,91398138	0.695652
thyroid_gland_male_adult_54_years	chr11	57793995	57794024	57793995	+	RAMPAGE_only	2	2	10	0.351779	2.921928	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.900000
thyroid_gland_male_adult_54_years	chr1	166850301	166850307	166850306	+	RAMPAGE_only	3	3	7	0.246245	2.584963	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.857143
thyroid_gland_male_adult_54_years	chr1	33021393	33021458	33021416	-	RAMPAGE_only	5	5	37	1.301581	4.152172	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.918919
thyroid_gland_male_adult_54_years	chr9	94144637	94144668	94144662	+	High_confidence	5	5	15	0.527668	3.664498	chr9	94144621	94144952	LTR|ERVL-MaLR|MLT1L	-	chr9	94144629	94150605	STRG.51969.1	+	94144629,94145785	94144866,94150605	0.733333
thyroid_gland_male_adult_54_years	chr3	187031686	187031703	187031694	+	RAMPAGE_only	2	2	8	0.281423	3.000000	chr3	187031440	187031734	SINE|Alu|AluSz	-	chr3	187021876	187078553	ST6GAL1|NM_003032.2	+	187021876,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.625000
thyroid_gland_male_adult_54_years	chr1	21227158	21227177	21227164	-	RAMPAGE_only	3	3	10	0.351779	3.169925	chr1	21227023	21227146	SINE|Alu|AluJr4	-	chr1	21218583	21279549	ECE1|ENST00000357071.8	-	21218583,21221746,21225249,21227158,21227930,21233557,21235849,21236745,21238133,21244988,21247220,21255946,21257524,21258692,21260270,21272698,21279190	21220131,21221842,21225440,21227226,21228041,21233661,21235927,21236844,21238244,21245103,21247363,21256138,21257590,21258839,21260392,21272911,21279549	0.900000
thyroid_gland_male_adult_54_years	chr15	40375820	40375934	40375820	-	High_confidence	70	70	354	12.452965	6.702089	chr15	40375715	40376016	DNA|hAT-Charlie|Charlie2a	+	chr15	40358729	40375930	STRG.74619.10	-	40358729,40371838,40375622	40371017,40372094,40375930	0.844633
thyroid_gland_male_adult_54_years	chr7	100082573	100082577	100082576	-	High_confidence	13	17	41	1.442293	4.211702	chr7	100082301	100082600	SINE|Alu|AluSx1	+	chr7	100069970	100082548	ZNF3|NM_001278284.1	-	100069970,100075134,100075541,100077302,100079535,100082300	100072212,100075261,100075630,100077433,100079656,100082548	0.878049
thyroid_gland_male_adult_54_years	chr2	229232042	229232054	229232042	-	High_confidence	5	6	12	0.422134	3.095795	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.750000
thyroid_gland_male_adult_54_years	chr7	107580245	107580272	107580264	+	High_confidence	1614	1623	7836	275.653758	7.087436	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.924834
thyroid_gland_male_adult_54_years	chr17	70100660	70100671	70100660	+	RAMPAGE_only	6	6	19	0.668379	3.572431	chr17	70100541	70100738	SINE|MIR|MIR	-	chr17	70096639	70133604	KCNJ16|ENST00000586462.1	+	70096639,70131994	70096926,70133604	0.894737
thyroid_gland_male_adult_54_years	chr13	54572234	54572235	54572234	+	High_confidence	53	55	76	2.673518	5.298858	chr13	54572234	54573121	LINE|L1|L1HS	+	chr13	54572241	54776661	STRG.68464.1	+	54572241,54581570,54776434	54572331,54581771,54776661	0.539474
thyroid_gland_male_adult_54_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	46	47	51	1.794071	5.046370	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.509804
thyroid_gland_male_adult_54_years	chr11	58578102	58578168	58578132	-	High_confidence	29	41	206	7.246640	6.327252	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.640777
thyroid_gland_male_adult_54_years	chr2	159428326	159428411	159428356	-	RAMPAGE_only	19	20	56	1.969960	5.458591	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159400598	159419867	BAZ2B|ENST00000482501.5	-	159400598,159404848,159405021,159412334,159419779	159400664,159404910,159405114,159412545,159419867	0.660714
thyroid_gland_male_adult_54_years	chr6	150398857	150399113	150398959	+	RAMPAGE_only	14	16	315	11.081028	5.842247	chr6	150398759	150399060	SINE|Alu|AluSx	+	chr6	150368891	150405969	IYD|ENST00000344419.7	+	150368891,150389351,150392344,150394098,150398054	150369209,150389543,150392504,150394255,150405969	0.993651
thyroid_gland_male_adult_54_years	chr9	110170898	110170945	110170898	+	RAMPAGE_only	2	2	13	0.457312	3.546594	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
thyroid_gland_male_adult_54_years	chr21	42350457	42350493	42350487	+	High_confidence	47	69	166	5.839526	6.288090	chr21	42350245	42350552	SINE|Alu|AluJb	+	chr21	42350457	42363712	STRG.89909.1	+	42350457,42350880,42358773,42359051	42350605,42351013,42358953,42363712	0.584337
thyroid_gland_male_adult_54_years	chr1	53905838	53905839	53905838	+	RAMPAGE_only	4	4	6	0.211067	2.584963	chr1	53905879	53905956	SINE|MIR|MIR3	+	chr1	53894210	53909999	DIO1|ENST00000525202.5	+	53894210,53904665,53906094,53909930	53894355,53904809,53906294,53909999	0.666667
thyroid_gland_male_adult_54_years	chr6	118651538	118651602	118651592	-	High_confidence	11	11	79	2.779051	5.086890	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.987342
thyroid_gland_male_adult_54_years	chr9	128740800	128740811	128740800	-	RAMPAGE_only	2	2	7	0.246245	2.584963	chr9	128740596	128740754	LINE|RTE-X|L4_C_Mam	-	chr9	128729785	128771893	ZER1|ENST00000291900.6	-	128729785,128733425,128735333,128739930,128740771,128741534,128741799,128742529,128750615,128751121,128751412,128752672,128753163,128753808,128755407,128771580	128731394,128733528,128735431,128740119,128740887,128741654,128741841,128742745,128750789,128751268,128751527,128752849,128753600,128753959,128755659,128771893	0.714286
thyroid_gland_male_adult_54_years	chr10	133369924	133369994	133369953	-	RAMPAGE_only	3	3	31	1.090514	4.237291	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.870968
thyroid_gland_male_adult_54_years	chr14	81166312	81166336	81166335	-	RAMPAGE_only	20	23	47	1.653360	4.597083	chr14	81166191	81166439	LTR|ERVL-MaLR|MLT1J2	+	chr14	81012098	81170224	AC007262.2|ENST00000646052.1	-	81012098,81053682,81087466,81093581,81094214,81099398,81165192,81170108	81014404,81053816,81087652,81093737,81094324,81099526,81165381,81170224	0.893617
thyroid_gland_male_adult_54_years	chr15	45631147	45631148	45631147	+	High_confidence	6	6	6	0.211067	2.584963	chr15	45630952	45631306	LTR|ERVL-MaLR|THE1A	+	chr15	45631147	45691280	SQOR|ENST00000568606.5	+	45631147,45631926,45658906,45661954,45669927,45673606,45676100,45682477,45688336,45689038,45690972	45631230,45632015,45659157,45662125,45669981,45673801,45676310,45682661,45688404,45689217,45691280	1.000000
thyroid_gland_male_adult_54_years	chr1	147173169	147173226	147173173	+	High_confidence	7	7	34	1.196047	4.653496	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.911765
thyroid_gland_male_adult_54_years	chr13	52570267	52570324	52570323	+	RAMPAGE_only	15	15	39	1.371937	4.316827	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.846154
thyroid_gland_male_adult_54_years	chr3	125497354	125497355	125497354	-	RAMPAGE_only	5	5	7	0.246245	2.584963	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	0.857143
thyroid_gland_male_adult_54_years	chr14	104048946	104049001	104048991	+	High_confidence	6	6	27	0.949802	4.243856	chr14	104048402	104049097	LINE|L1|L1M4a1	-	chr14	104049417	104052665	TDRD9|ENST00000462273.1	+	104049417,104051980	104049680,104052665	0.925926
thyroid_gland_male_adult_54_years	chr2	221501636	221501654	221501636	-	High_confidence	16	17	35	1.231225	4.214997	chr2	221501442	221501654	SINE|MIR|MIRb	-	chr2	221482439	221501344	EPHA4|ENST00000463446.1	-	221482439,221501016	221482690,221501344	0.571429
thyroid_gland_male_adult_54_years	chr2	46903828	46903920	46903828	-	RAMPAGE_only	9	9	34	1.196047	4.477025	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	1.000000
thyroid_gland_male_adult_54_years	chr12	27030154	27030175	27030154	+	High_confidence	7	7	13	0.457312	2.688722	chr12	27030124	27030371	SINE|Alu|AluJr	-	chr12	27030259	27030673	MED21|ENST00000621885.1	+	27030259	27030673	0.769231
thyroid_gland_male_adult_54_years	chr11	17282800	17282825	17282813	+	RAMPAGE_only	9	9	40	1.407115	4.859641	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.825000
thyroid_gland_male_adult_54_years	chr1	54172715	54172728	54172727	-	RAMPAGE_only	3	3	6	0.211067	2.584963	chr1	54172537	54172738	LINE|L2|L2b	+	chr1	54138994	54153770	CDCP2|ENST00000371330.1	-	54138994,54141097,54144465,54152843	54140106,54141433,54144813,54153770	0.500000
thyroid_gland_male_adult_54_years	chr8	30812360	30812454	30812453	-	High_confidence	33	33	177	6.226482	5.748789	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	1.000000
thyroid_gland_male_adult_54_years	chr11	71999605	71999642	71999614	+	High_confidence	5	7	20	0.703557	3.684184	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	0.850000
thyroid_gland_male_adult_54_years	chr21	28048446	28048447	28048446	+	High_confidence	231	235	258	9.075889	4.407811	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.937984
thyroid_gland_male_adult_54_years	chrY	12686530	12686573	12686530	+	RAMPAGE_only	3	3	13	0.457312	2.855389	chrY	12685409	12686624	LTR|ERV1|MER4-int	+	chrY	12701230	12860839	USP9Y|ENST00000338981.7	+	12701230,12708633,12709387,12720588,12722107,12725112,12726574,12735611,12735997,12736410,12738156,12739524,12757191,12758505,12760483,12771067,12773582,12775470,12776648,12778018,12778605,12779525,12786202,12786521,12790406,12791498,12793031,12810178,12810671,12811634,12812829,12816123,12818419,12833687,12837910,12839863,12841009,12842239,12843063,12846332,12846932,12847238,12856339,12856632,12857565,12859278	12702055,12708693,12709543,12720737,12722187,12725225,12726793,12735727,12736249,12736549,12738309,12739629,12757398,12758642,12760617,12771155,12773925,12775566,12776860,12778259,12778755,12779646,12786333,12786800,12790532,12791624,12793201,12810287,12810818,12811781,12813052,12816344,12818610,12833861,12838052,12840614,12841133,12842465,12843193,12846518,12847153,12847327,12856496,12856845,12857661,12860839	0.769231
thyroid_gland_male_adult_54_years	chr7	111413976	111414006	111413984	-	RAMPAGE_only	7	9	32	1.125692	4.562500	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	110663049	111562291	IMMP2L|NM_032549.3	-	110663049,110886592,110963499,111487237,111521312,111561850	110663721,110886695,110963565,111487341,111521449,111562291	0.531250
thyroid_gland_male_adult_54_years	chr16	29963519	29963579	29963560	+	High_confidence	4	4	18	0.633202	3.852169	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.666667
thyroid_gland_male_adult_54_years	chr8	144106344	144106374	144106364	+	High_confidence	4	4	18	0.633202	3.683542	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.555556
thyroid_gland_male_adult_54_years	chr9	135444237	135444254	135444253	-	High_confidence	125	157	232	8.161265	6.871840	chr9	135444140	135444321	LTR|ERV1|LTR2C	-	chr9	135428801	135444309	STRG.53762.3	-	135428801	135444309	0.896552
thyroid_gland_male_adult_54_years	chr6	31587195	31587202	31587201	+	High_confidence	4	4	9	0.316601	2.500000	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.888889
thyroid_gland_male_adult_54_years	chr4	41118092	41118093	41118092	-	RAMPAGE_only	15	15	15	0.527668	3.506891	chr4	41117925	41118210	SINE|Alu|AluJb	+	chr4	40814606	41214458	APBB2|ENST00000513140.5	-	40814606,40821870,40823643,40825886,40827131,40830462,40890363,40893264,40934455,40934613,40944864,41013582,41033235,41065575,41100638,41142986,41214404	40816259,40822050,40823759,40825967,40827219,40830577,40890491,40893411,40934516,40934699,40945070,41014398,41033304,41065673,41100750,41143142,41214458	1.000000
thyroid_gland_male_adult_54_years	chr13	38354269	38354285	38354269	+	RAMPAGE_only	2	2	6	0.211067	2.584963	chr13	38354306	38354393	LINE|L1|L1M5	+	chr13	38349885	38363457	STRG.67986.3	+	38349885,38349998,38354238,38358092,38359300	38349921,38350055,38354296,38358132,38363457	1.000000
thyroid_gland_male_adult_54_years	chr1	6820178	6820198	6820197	+	RAMPAGE_only	3	4	10	0.351779	2.947703	chr1	6820180	6820209	DNA|hAT-Charlie|MER103C	-	chr1	6806987	6871858	CAMTA1|ENST00000486138.1	+	6806987,6820180,6825091,6871756	6807088,6820250,6825210,6871858	0.600000
thyroid_gland_male_adult_54_years	chr12	9407491	9407507	9407506	-	RAMPAGE_only	3	3	6	0.211067	2.584963	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9398354	9414851	AC141557.1|ENST00000540982.1	-	9398354,9400235,9402426,9414802	9398484,9400326,9402556,9414851	0.833333
thyroid_gland_male_adult_54_years	chr5	70401416	70401470	70401416	+	High_confidence	8	8	61	2.145850	4.729357	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70401408	70447526	STRG.29801.9	+	70401408,70420248,70421279,70421736,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70401668,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.950820
thyroid_gland_male_adult_54_years	chr9	132354459	132354465	132354459	-	High_confidence	4	4	8	0.281423	2.521641	chr9	132354269	132354525	SINE|Alu|AluJr	+	chr9	132261355	132354985	SETX|ENST00000224140.5	-	132261355,132269614,132271709,132275255,132277059,132278069,132281466,132283263,132286422,132288235,132288549,132295871,132296886,132298079,132300629,132311756,132326323,132331051,132331276,132334607,132336295,132342689,132346260,132349251,132353648,132354916	132264985,132269702,132271808,132275420,132277152,132278257,132281574,132283413,132286494,132288351,132288651,132296028,132297054,132298312,132300803,132311856,132330499,132331139,132331448,132334727,132336515,132342799,132346471,132349435,132353755,132354985	0.625000
thyroid_gland_male_adult_54_years	chr5	151158488	151158509	151158498	-	High_confidence	8	8	40	1.407115	4.804508	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.825000
thyroid_gland_male_adult_54_years	chr17	21000803	21000825	21000803	-	RAMPAGE_only	15	15	26	0.914625	4.323856	chr17	21000780	21001059	SINE|Alu|AluSx	+	chr17	20999592	21043039	USP22|ENST00000261497.8	-	20999592,21004201,21004927,21006895,21007869,21011150,21012829,21015751,21017941,21019083,21021112,21028541,21042664	21003073,21004351,21004990,21006987,21007996,21011309,21012935,21015899,21018111,21019185,21021226,21028674,21043039	0.961538
thyroid_gland_male_adult_54_years	chr20	24931344	24931425	24931377	+	High_confidence	12	16	97	3.412253	4.945239	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24931839	24932983	AL035661.1|ENST00000620459.1	+	24931839	24932983	0.567010
thyroid_gland_male_adult_54_years	chr5	140596762	140596763	140596762	+	RAMPAGE_only	11	11	11	0.386957	2.845351	chr5	140596528	140596989	LTR|ERVL|MER70A	+	chr5	140639452	140642385	TMCO6|ENST00000511410.5	+	140639452,140639738,140641664	140639612,140639851,140642385	0.545455
thyroid_gland_male_adult_54_years	chr11	119110890	119110891	119110890	+	High_confidence	7	7	7	0.246245	2.521641	chr11	119110843	119110902	LINE|CR1|L3b	+	chr11	119111056	119117121	C2CD2L|ENST00000528586.2	+	119111056,119111262,119111520,119112327,119112481,119112699,119113610,119113854,119114079,119116024	119111168,119111374,119111629,119112392,119112609,119112874,119113712,119113988,119114365,119117121	0.714286
thyroid_gland_male_adult_54_years	chr19	45823822	45823824	45823822	-	RAMPAGE_only	6	10	12	0.422134	2.845351	chr19	45823777	45823871	LINE|RTE-BovB|MamRTE1	-	chr19	45818954	45855710	SYMPK|ENST00000599814.5	-	45818954,45822755,45823371,45823766,45825170,45826225,45827509,45827836,45828969,45830053,45831383,45835077,45838460,45842249,45844029,45847751,45848749,45852311,45852481,45854174,45854390	45821485,45822846,45823472,45823875,45825331,45826373,45827623,45827918,45829205,45830204,45831588,45835228,45838615,45842489,45844200,45848001,45848876,45852385,45852535,45854240,45855710	0.916667
thyroid_gland_male_adult_54_years	chr1	12356414	12356456	12356414	+	High_confidence	7	8	18	0.633202	2.927451	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12356350	12510346	VPS13D|ENST00000646411.1	+	12356350,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12356524,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	1.000000
thyroid_gland_male_adult_54_years	chr2	113220450	113220489	113220466	-	High_confidence	3	6	23	0.809091	3.969002	chr2	113220427	113220543	SINE|MIR|MIR	-	chr2	113218468	113220477	PAX8|ENST00000480684.1	-	113218468,113220091	113218609,113220477	0.826087
thyroid_gland_male_adult_54_years	chr16	11587465	11587469	11587465	-	High_confidence	5	5	18	0.633202	3.614369	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	1.000000
thyroid_gland_male_adult_54_years	chr8	132911403	132912101	132911474	+	RAMPAGE_only	197	217	4117	144.827274	9.016934	chr8	132911503	132911684	SINE|MIR|MIRc	+	chr8	132897747	133017967	STRG.55349.4	+	132897747,132898168,132898797,132900236,132901352,132906687,132908185,132911376,132913046,132919375,132923337,132929075,132933560,132935755,132941350,132948775,132961007,132961831,132966559,132967793,132969457,132971793,132972597,132983349,133011900,133013599,133017777	132897786,132898246,132898910,132900339,132901553,132906900,132908340,132911533,132913265,132919525,132923508,132929192,132933676,132935864,132941542,132948943,132961073,132963074,132966697,132967970,132969569,132971873,132972741,132983412,133012035,133013764,133017967	0.586592
thyroid_gland_male_adult_54_years	chr1	39526521	39526543	39526541	+	RAMPAGE_only	15	28	47	1.653360	4.550630	chr1	39526339	39526637	SINE|Alu|AluSx1	-	chr1	39491645	39529869	BMP8A|NM_181809.3	+	39491645,39511173,39511755,39521375,39522402,39523006,39525648	39492325,39511363,39511904,39521570,39522482,39523117,39529869	0.978723
thyroid_gland_male_adult_54_years	chr16	68834430	68834493	68834430	+	RAMPAGE_only	3	3	18	0.633202	3.836592	chr16	68834273	68834516	SINE|Alu|AluJr	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.500000
thyroid_gland_male_adult_54_years	chr14	100291506	100291507	100291506	-	RAMPAGE_only	8	8	9	0.316601	2.750000	chr14	100291489	100291554	SINE|MIR|MIR1_Amn	-	chr14	100291115	100296545	SLC25A29|ENST00000554912.1	-	100291115,100293293	100293032,100296545	0.555556
thyroid_gland_male_adult_54_years	chr4	86453149	86453203	86453184	-	High_confidence	8	9	44	1.547826	4.707677	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016014	86453185	MAPK10|ENST00000641634.1	-	86016014,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194318,86354529,86429677,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86429805,86453185	0.795455
thyroid_gland_male_adult_54_years	chr17	1659356	1659379	1659356	-	RAMPAGE_only	3	3	10	0.351779	3.169925	chr17	1659014	1659325	SINE|Alu|AluSx3	-	chr17	1650630	1684837	PRPF8|ENST00000572621.5	-	1650630,1651107,1651413,1651647,1653541,1653776,1655349,1656391,1656647,1658252,1658525,1659356,1659840,1660431,1660697,1660992,1661270,1661610,1661905,1673080,1673356,1673745,1674441,1675151,1675619,1675927,1676206,1676504,1676975,1677564,1678517,1678761,1679016,1679290,1679608,1680725,1680928,1681477,1681819,1682128,1683532,1684471	1650956,1651310,1651553,1651788,1653683,1654016,1655543,1656565,1656761,1658381,1658763,1659548,1660001,1660578,1660827,1661162,1661406,1661790,1662153,1673197,1673567,1673892,1674680,1675339,1675812,1676054,1676370,1676711,1677172,1677694,1678652,1678881,1679206,1679410,1679799,1680831,1681054,1681690,1682038,1682293,1683701,1684837	0.900000
thyroid_gland_male_adult_54_years	chr1	235379879	235379913	235379912	+	High_confidence	10	13	37	1.301581	3.592956	chr1	235379666	235379964	SINE|Alu|AluSz6	+	chr1	235380018	235448968	TBCE|ENST00000642339.1	+	235380018,235414432,235419472,235427139,235430704,235435744,235436385,235436543,235437321,235438768,235441813,235442851,235448348,235448669	235380149,235414618,235419561,235427239,235430804,235435840,235436450,235436608,235437474,235438922,235441882,235442911,235448440,235448968	0.756757
thyroid_gland_male_adult_54_years	chr1	25244109	25244201	25244143	-	High_confidence	5	5	34	1.196047	3.195745	chr1	25244059	25244116	SINE|Alu|Alu	-	chr1	25242248	25244105	RSRP1|ENST00000569495.5	-	25242248,25242538,25243549	25242426,25242705,25244105	1.000000
thyroid_gland_male_adult_54_years	chr1	6208681	6208682	6208681	-	High_confidence	213	213	213	7.492885	3.791814	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.990610
thyroid_gland_male_adult_54_years	chr3	52615383	52615424	52615409	-	High_confidence	3	3	17	0.598024	3.280639	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.941176
thyroid_gland_male_adult_54_years	chr9	125337365	125337376	125337365	+	RAMPAGE_only	4	4	12	0.422134	3.084963	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125302209	125340630	STRG.53409.11	+	125302209,125305062,125307412,125307690,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220	125302826,125305149,125307547,125307880,125312612,125321562,125323923,125326589,125330218,125332060,125335252,125337095,125340630	0.500000
thyroid_gland_male_adult_54_years	chr16	70590308	70590329	70590328	+	RAMPAGE_only	5	5	13	0.457312	3.418296	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.692308
thyroid_gland_male_adult_54_years	chr19	57901656	57901657	57901656	-	RAMPAGE_only	11	11	12	0.422134	2.845351	chr19	57901134	57902661	LTR|ERVK|HERVK14-int	+	chr19	57850319	57888958	ZNF814|ENST00000597342.5	-	57850319,57876915,57885882,57888766	57850561,57877042,57885969,57888958	0.916667
thyroid_gland_male_adult_54_years	chr22	39021125	39021156	39021155	+	High_confidence	10	10	35	1.231225	4.536286	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
thyroid_gland_male_adult_54_years	chr5	117455061	117455068	117455067	+	High_confidence	7	7	19	0.668379	3.721612	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.894737
thyroid_gland_male_adult_54_years	chr4	141333512	141333592	141333512	+	High_confidence	149	166	786	27.649803	6.160515	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141332966	141657522	STRG.26940.7	+	141332966,141580370,141656185	141333774,141580563,141657522	0.650127
thyroid_gland_male_adult_54_years	chr5	79471002	79471003	79471002	-	RAMPAGE_only	16	16	21	0.738735	3.784184	chr5	79470946	79471011	LINE|L2|L2a	+	chr5	79375929	79512794	HOMER1|ENST00000508576.5	-	79375929,79439009,79447052,79450989,79456861,79512769	79376197,79439149,79447145,79451121,79457018,79512794	0.761905
thyroid_gland_male_adult_54_years	chr19	7642294	7642310	7642309	+	High_confidence	2	2	7	0.246245	2.584963	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642780	7647873	STXBP2|ENST00000600702.5	+	7642780,7642982,7643164,7644613,7645196,7646248,7647161,7647724	7642823,7643048,7643245,7644752,7645306,7646344,7647247,7647873	0.857143
thyroid_gland_male_adult_54_years	chr16	72627719	72627730	72627719	-	RAMPAGE_only	10	11	24	0.844269	4.061482	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.583333
thyroid_gland_male_adult_54_years	chr6	48111150	48111194	48111180	-	High_confidence	114	121	611	21.493676	6.961952	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47899608	48111236	STRG.35910.2	-	47899608,48008633,48068229,48068952,48111048	47901935,48009114,48068641,48069926,48111236	0.664484
thyroid_gland_male_adult_54_years	chr9	111284874	111284875	111284874	-	High_confidence	14	15	15	0.527668	3.235926	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.666667
thyroid_gland_male_adult_54_years	chr9	131122014	131122090	131122023	+	RAMPAGE_only	9	10	53	1.864427	4.410881	chr9	131121938	131122086	LINE|L2|L2c	-	chr9	131096550	131123145	AIF1L|ENST00000372300.5	+	131096550,131096801,131111596,131114576,131117755,131120234	131096660,131096863,131111663,131114618,131117847,131123145	0.943396
thyroid_gland_male_adult_54_years	chr8	133017325	133017356	133017336	+	High_confidence	4	4	10	0.351779	2.921928	chr8	133017209	133017437	DNA|TcMar-Tigger|MER46C	+	chr8	133017698	133029979	TG|ENST00000518108.1	+	133017698,133019601,133021990,133029820	133017866,133019695,133022150,133029979	0.500000
thyroid_gland_male_adult_54_years	chr2	160035439	160035441	160035440	+	High_confidence	7	11	12	0.422134	3.277613	chr2	160035321	160035476	LTR|ERVL|LTR16A	+	chr2	160035365	160061534	STRG.12952.1	+	160035365,160056125,160060462	160035501,160056230,160061534	0.666667
thyroid_gland_male_adult_54_years	chr18	35467052	35467081	35467080	-	High_confidence	10	10	16	0.562846	3.750000	chr18	35467057	35467118	DNA|hAT-Charlie|MER5A	-	chr18	35466318	35467309	STRG.82964.1	-	35466318	35467309	0.500000
thyroid_gland_male_adult_54_years	chr18	36807856	36807870	36807856	-	High_confidence	3	3	13	0.457312	3.418296	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.615385
thyroid_gland_male_adult_54_years	chr1	77169367	77169391	77169387	-	RAMPAGE_only	2	3	8	0.281423	3.000000	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77088989	77219426	PIGK|ENST00000370812.7	-	77088989,77122274,77154448,77161294,77161593,77163845,77166718,77169259,77206639,77210435,77219309	77092490,77122359,77154621,77161405,77161711,77163942,77166830,77169395,77206731,77210489,77219426	1.000000
thyroid_gland_male_adult_54_years	chr2	113223792	113224003	113223792	-	RAMPAGE_only	11	12	164	5.769170	6.373225	chr2	113223533	113223885	LINE|L2|L2a	+	chr2	113218527	113235443	STRG.11994.18	-	113218527,113220091,113235393	113218609,113227256,113235443	0.993902
thyroid_gland_male_adult_54_years	chr9	37426612	37426649	37426648	+	RAMPAGE_only	4	5	11	0.386957	3.095795	chr9	37426667	37426970	SINE|Alu|AluSx3	+	chr9	37427705	37436989	GRHPR|ENST00000497693.1	+	37427705,37436660	37432138,37436989	1.000000
thyroid_gland_male_adult_54_years	chr1	196404264	196404273	196404272	-	High_confidence	6	6	10	0.351779	3.321928	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196324657	196404247	STRG.6548.3	-	196324657,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404247	0.700000
thyroid_gland_male_adult_54_years	chr3	24018910	24018949	24018948	+	High_confidence	4	4	17	0.598024	3.499228	chr3	24018754	24020004	LTR|ERV1|LTR2752	-	chr3	24018965	24189726	STRG.17399.1	+	24018965,24087924,24173783,24177949,24189574	24019269,24088061,24173904,24178012,24189726	0.705882
thyroid_gland_male_adult_54_years	chr3	43490913	43490932	43490931	-	High_confidence	7	8	15	0.527668	3.589898	chr3	43490741	43491230	LTR|ERV1|MER50	+	chr3	43365847	43490917	STRG.17985.8	-	43365847,43432610,43490683	43366974,43432727,43490917	0.866667
thyroid_gland_male_adult_54_years	chr15	55514631	55514652	55514631	-	High_confidence	102	114	211	7.422530	5.965053	chr15	55513405	55516274	LTR|ERV1|HERVE_a-int	-	chr15	55509923	55514639	STRG.75071.25	-	55509923	55514639	1.000000
thyroid_gland_male_adult_54_years	chr18	5295387	5295388	5295387	-	High_confidence	4	4	7	0.246245	2.521641	chr18	5295086	5295338	LINE|L1|L1M4b	-	chr18	5289018	5295702	ZBTB14|NM_001243702.1	-	5289018,5293243,5293971,5295651	5292204,5293327,5294001,5295702	1.000000
thyroid_gland_male_adult_54_years	chr15	57357170	57357171	57357170	+	RAMPAGE_only	5	5	8	0.281423	3.000000	chr15	57357113	57357474	DNA|TcMar-Tigger|Tigger2a	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
thyroid_gland_male_adult_54_years	chr5	139364701	139364719	139364701	+	RAMPAGE_only	3	3	9	0.316601	2.750000	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.666667
thyroid_gland_male_adult_54_years	chr11	85682862	85682891	85682862	-	High_confidence	3	6	13	0.457312	3.251629	chr11	85682520	85682971	DNA|hAT-Tip100|MER115	+	chr11	85681701	85682455	STRG.61432.1	-	85681701	85682455	0.615385
thyroid_gland_male_adult_54_years	chr5	156972307	156972348	156972334	-	High_confidence	49	57	290	10.201581	5.040653	chr5	156972200	156972374	LTR|ERVL-MaLR|MLT1M	-	chr5	156947951	156972334	STRG.33127.1	-	156947951,156948415,156949650,156951511,156954414,156972242	156948320,156948499,156949731,156951790,156954756,156972334	0.962069
thyroid_gland_male_adult_54_years	chr15	53911116	53911167	53911166	+	High_confidence	13	14	99	3.482609	5.277460	chr15	53910904	53913193	LTR|ERVL|HERVL18-int	+	chr15	53910768	53914712	AC084759.3|ENST00000624468.1	+	53910768	53914712	0.959596
thyroid_gland_male_adult_54_years	chr1	12572727	12572809	12572757	-	RAMPAGE_only	6	7	40	1.407115	4.631305	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.925000
thyroid_gland_male_adult_54_years	chr1	1721704	1721708	1721704	-	High_confidence	7	7	12	0.422134	3.277613	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.916667
thyroid_gland_male_adult_54_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	10	10	11	0.386957	2.721928	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155440937	STRG.5589.8	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155440502	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155440937	0.727273
thyroid_gland_male_adult_54_years	chr14	75132316	75132418	75132316	-	RAMPAGE_only	5	5	77	2.708696	5.146466	chr14	75132105	75132408	SINE|Alu|AluSz	+	chr14	75131469	75176631	TMED10|ENST00000303575.8	-	75131469,75135759,75147663,75152031,75176354	75135006,75135886,75147737,75152143,75176631	1.000000
thyroid_gland_male_adult_54_years	chr10	30999441	30999447	30999446	-	RAMPAGE_only	5	5	9	0.316601	2.750000	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30985910	31020761	STRG.54648.1	-	30985910	31020761	0.555556
thyroid_gland_male_adult_54_years	chr11	65431421	65431484	65431469	+	RAMPAGE_only	6	6	40	1.407115	4.803056	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
thyroid_gland_male_adult_54_years	chr3	154089571	154089612	154089599	-	RAMPAGE_only	20	20	165	5.804348	4.892808	chr3	154089524	154089737	DNA|hAT-Charlie|MER102a	-	chr3	154026577	154085263	ARHGEF26-AS1|ENST00000630930.2	-	154026577,154030276,154084681	154026642,154030379,154085263	0.575758
thyroid_gland_male_adult_54_years	chr21	42350323	42350339	42350338	-	High_confidence	4	4	20	0.703557	3.511085	chr21	42350245	42350552	SINE|Alu|AluJb	+	chr21	42346421	42350994	TFF2|ENST00000475297.1	-	42346421,42347485,42349880,42350266,42350878	42346546,42347632,42350030,42350359,42350994	0.800000
thyroid_gland_male_adult_54_years	chr2	113238786	113238827	113238797	-	RAMPAGE_only	7	7	32	1.125692	4.115487	chr2	113238660	113238873	SINE|MIR|MIRb	+	chr2	113218527	113241683	STRG.11994.13	-	113218527,113220091,113226143,113235393,113236600	113218609,113220178,113227256,113235582,113241683	0.968750
thyroid_gland_male_adult_54_years	chr3	197299271	197299321	197299271	-	High_confidence	12	12	55	1.934783	5.132487	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197042559	197299272	DLG1|NM_001290983.1	-	197042559,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299272	0.927273
thyroid_gland_male_adult_54_years	chr1	60949435	60949444	60949443	-	RAMPAGE_only	48	72	121	4.256522	5.500705	chr1	60949259	60949438	SINE|MIR|MIRb	-	chr1	60940238	60970776	NFIA-AS2|ENST00000438559.5	-	60940238,60941179,60952510,60954321,60954484,60963565,60970547	60940631,60941252,60952684,60954370,60954602,60963804,60970776	0.760331
thyroid_gland_male_adult_54_years	chr1	39526879	39526918	39526917	+	RAMPAGE_only	5	5	26	0.914625	4.022055	chr1	39526850	39526971	DNA|hAT-Charlie|MER117	-	chr1	39491645	39529869	BMP8A|NM_181809.3	+	39491645,39511173,39511755,39521375,39522402,39523006,39525648	39492325,39511363,39511904,39521570,39522482,39523117,39529869	0.923077
thyroid_gland_male_adult_54_years	chr2	113222624	113222664	113222663	-	RAMPAGE_only	6	6	19	0.668379	3.721612	chr2	113222501	113223504	LINE|L2|L2a	+	chr2	113218527	113235443	STRG.11994.18	-	113218527,113220091,113235393	113218609,113227256,113235443	0.894737
thyroid_gland_male_adult_54_years	chr2	160035301	160035308	160035307	+	High_confidence	6	6	14	0.492490	3.026987	chr2	160035321	160035476	LTR|ERVL|LTR16A	+	chr2	160035365	160061534	STRG.12952.1	+	160035365,160056125,160060462	160035501,160056230,160061534	0.785714
thyroid_gland_male_adult_54_years	chr15	80059915	80059926	80059918	+	High_confidence	186	209	403	14.176680	5.600268	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.980149
thyroid_gland_male_adult_54_years	chr3	50816069	50816075	50816069	+	RAMPAGE_only	11	11	23	0.809091	3.820889	chr3	50815749	50816183	LTR|ERV1|LTR54B	-	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.739130
thyroid_gland_male_adult_54_years	chr3	133933944	133933946	133933944	-	RAMPAGE_only	7	11	15	0.527668	3.378783	chr3	133933665	133934080	DNA|TcMar-Tigger|Tigger19b	+	chr3	133928144	134030076	SLCO2A1|ENST00000310926.9	-	133928144,133935773,133938428,133942604,133945094,133947255,133948535,133948892,133951207,133953662,133954965,133973662,133979480,134029706	133934830,133935897,133938493,133942768,133945260,133947445,133948700,133948971,133951344,133953761,133955193,133973825,133979618,134030076	0.933333
thyroid_gland_male_adult_54_years	chr14	36153812	36153931	36153846	-	RAMPAGE_only	7	8	50	1.758893	4.766939	chr14	36153784	36154080	SINE|Alu|AluJb	+	chr14	36135709	36176651	PTCSC3|NR_049735.2	-	36135709,36153803,36162623,36176297	36136356,36153894,36162683,36176651	0.820000
thyroid_gland_male_adult_54_years	chr1	21833822	21833828	21833827	-	High_confidence	3	6	10	0.351779	3.169925	chr1	21833729	21833783	LINE|L2|L2c	-	chr1	21829992	21833577	HSPG2|ENST00000635682.1	-	21829992,21830981,21831214,21831462,21831651,21832494,21832874,21833267,21833466	21830091,21831090,21831324,21831562,21831796,21832606,21832892,21833384,21833577	0.900000
thyroid_gland_male_adult_54_years	chr5	79784498	79784526	79784498	+	RAMPAGE_only	3	3	9	0.316601	2.750000	chr5	79778884	79784938	LINE|L1|L1HS	-	chr5	79761240	79800136	STRG.30018.3	+	79761240,79788970,79790969,79793436,79799369	79763209,79789104,79791069,79793610,79800136	0.666667
thyroid_gland_male_adult_54_years	chr2	169294605	169294681	169294606	-	RAMPAGE_only	9	15	82	2.884585	5.080108	chr2	169294369	169294576	DNA|hAT-Blackjack|MER63A	-	chr2	169127108	169362534	LRP2|ENST00000649046.1	-	169127108,169129012,169132573,169137391,169138576,169139250,169139542,169140454,169142673,169145746,169146738,169150897,169152798,169154459,169156273,169157370,169162471,169165931,169168538,169169701,169170550,169172014,169173095,169173918,169175192,169176410,169177802,169181447,169182166,169185502,169187969,169191831,169193760,169196910,169198785,169201627,169202755,169203981,169205478,169206022,169206329,169209452,169211967,169213656,169216252,169220453,169225309,169226421,169231713,169233410,169235839,169237102,169238090,169239526,169240987,169242955,169243402,169244692,169246704,169247377,169256105,169257123,169259024,169270903,169272926,169275035,169277744,169279371,169280349,169282872,169289025,169290844,169292252,169294147,169294599,169307280,169318761,169320776,169362320	169128830,169129084,169132681,169137493,169138706,169139371,169139610,169140545,169142793,169145923,169146959,169151026,169152964,169154603,169156405,169157502,169162600,169166054,169168676,169169818,169170667,169172134,169173224,169174164,169175389,169176588,169178026,169181618,169182319,169186019,169188265,169192033,169193892,169197030,169198911,169201870,169202959,169204271,169205637,169206188,169207250,169209641,169212207,169213870,169216430,169220563,169225453,169226588,169231842,169233588,169236068,169237287,169238302,169239775,169241365,169243072,169243522,169244932,169246986,169247515,169256236,169257249,169259217,169271107,169273067,169275238,169277951,169279595,169280519,169283001,169289145,169290997,169292369,169294261,169294710,169307397,169318884,169320884,169362534	0.987805
thyroid_gland_male_adult_54_years	chr2	61949731	61949793	61949792	-	High_confidence	10	10	32	1.125692	4.663910	chr2	61949725	61949845	LTR|ERV1|MER34-int	-	chr2	61937476	61949773	STRG.10161.1	-	61937476,61943010,61949498	61938807,61943098,61949773	0.531250
thyroid_gland_male_adult_54_years	chr19	20362715	20362773	20362715	+	High_confidence	18	19	75	2.638340	5.277031	chr19	20362580	20362814	LTR|ERV1|HERVS71-int	+	chr19	20362557	20372226	STRG.85082.1	+	20362557,20369177	20362794,20372226	1.000000
thyroid_gland_male_adult_54_years	chr6	112880122	112880154	112880153	+	High_confidence	3	3	12	0.422134	3.277613	chr6	112879825	112880495	LTR|ERV1|MER52C	-	chr6	112880400	112880761	STRG.37825.1	+	112880400	112880761	0.583333
thyroid_gland_male_adult_54_years	chr20	44907378	44907410	44907393	+	RAMPAGE_only	3	5	16	0.562846	3.000000	chr20	44907296	44907477	SINE|Alu|FAM	+	chr20	44885710	44908532	YWHAB|ENST00000372839.7	+	44885710,44887647,44901530,44903992,44904967,44906000,44906381	44885886,44887742,44901833,44904116,44905131,44906096,44908532	1.000000
thyroid_gland_male_adult_54_years	chrX	154542217	154542240	154542239	+	High_confidence	3	3	8	0.281423	2.807355	chrX	154542235	154542311	SINE|MIR|MIR3	-	chrX	154542239	154565046	IKBKG|NM_001099856.4	+	154542239,154551987,154556164,154558531,154560406,154561687,154562809,154563558,154563958,154564318	154542452,154552189,154556376,154558650,154560559,154561784,154562953,154563701,154564020,154565046	0.875000
thyroid_gland_male_adult_54_years	chr6	150392258	150392259	150392258	+	RAMPAGE_only	4	4	7	0.246245	2.584963	chr6	150392226	150392276	SINE|Alu|AluJb	-	chr6	150368891	150405969	IYD|ENST00000344419.7	+	150368891,150389351,150392344,150394098,150398054	150369209,150389543,150392504,150394255,150405969	0.714286
thyroid_gland_male_adult_54_years	chr9	69122987	69123050	69123045	+	High_confidence	18	29	108	3.799210	4.913634	chr9	69122999	69123107	DNA|hAT-Charlie|MER5A1	+	chr9	69123047	69246746	TJP2|ENST00000647986.1	+	69123047,69151650,69185086,69212547,69216338,69218256,69220886,69225303,69226021,69227764,69227980,69229183,69230081,69234438,69236027,69236948,69237877,69238709,69239936,69246689	69123113,69151771,69185204,69212601,69216463,69218359,69221496,69225407,69226175,69227873,69228114,69229250,69230232,69234547,69236238,69237136,69237973,69238789,69240147,69246746	0.944444
thyroid_gland_male_adult_54_years	chr15	62753439	62753452	62753451	+	RAMPAGE_only	4	7	14	0.492490	3.664498	chr15	62753239	62753497	LTR|ERVL-MaLR|MLT1L	-	chr15	62757786	62844631	STRG.75298.5	+	62757786,62761680,62762271,62763562,62766320,62770963,62776763,62781139,62783770,62792640,62796126,62797218,62800367,62800652,62805599,62809924,62819515,62820485,62833503,62835736,62835890,62838855,62840481	62758659,62761821,62762453,62763695,62766422,62771134,62776910,62781241,62783890,62792787,62796293,62797402,62800493,62800769,62805785,62810032,62819621,62820610,62833629,62835799,62836073,62838981,62844631	0.714286
thyroid_gland_male_adult_54_years	chr2	61971451	61971458	61971451	+	RAMPAGE_only	2	2	7	0.246245	2.584963	chr2	61971115	61971625	LTR|ERV1|LTR10D	-	chr2	61905646	62136247	COMMD1|ENST00000311832.5	+	61905646,62000700,62135830	61905858,62000982,62136247	0.857143
thyroid_gland_male_adult_54_years	chr16	53077494	53077509	53077508	+	RAMPAGE_only	3	3	7	0.246245	2.584963	chr16	53077310	53077626	SINE|Alu|AluY	-	chr16	53099159	53222755	CHD9|ENST00000565832.5	+	53099159,53155925,53209481,53222643	53099268,53157541,53209813,53222755	0.714286
thyroid_gland_male_adult_54_years	chr20	8600719	8600739	8600719	+	High_confidence	4	4	11	0.386957	2.845351	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	1.000000
thyroid_gland_male_adult_54_years	chr19	3062922	3062983	3062939	-	High_confidence	21	23	105	3.693676	5.675838	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	1.000000
thyroid_gland_male_adult_54_years	chr10	78977923	78977972	78977923	-	RAMPAGE_only	6	7	27	0.949802	4.180833	chr10	78977477	78978221	LINE|L2|L2c	+	chr10	78943327	78962394	ZMIZ1-AS1|ENST00000428862.5	-	78943327,78945911,78960504,78961253	78944747,78945989,78960716,78962394	0.888889
thyroid_gland_male_adult_54_years	chr14	81169737	81169746	81169745	+	High_confidence	6	6	15	0.527668	3.373557	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81170678	81171910	STRG.72768.1	+	81170678	81171910	0.600000
thyroid_gland_male_adult_54_years	chr13	24580610	24580649	24580626	+	High_confidence	5	5	23	0.809091	4.055958	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.565217
thyroid_gland_male_adult_54_years	chr6	31400598	31400631	31400617	-	High_confidence	6	6	27	0.949802	4.083856	chr6	31400351	31400638	SINE|Alu|AluSp	+	chr6	31399632	31400599	STRG.35189.1	-	31399632	31400599	0.703704
thyroid_gland_male_adult_54_years	chr2	46000837	46000872	46000871	+	High_confidence	3	3	11	0.386957	2.646439	chr2	46000000	46000990	LINE|L1|L1MCa	-	chr2	46000901	46010964	PRKCE|ENST00000394874.1	+	46000901,46001403,46004541,46007461,46010343,46010683	46001002,46001546,46004638,46007661,46010517,46010964	0.818182
thyroid_gland_male_adult_54_years	chr22	31124143	31124256	31124143	+	RAMPAGE_only	5	5	50	1.758893	4.376175	chr22	31124115	31124241	SINE|MIR|MIR3	-	chr22	31122965	31125373	INPP5J|ENST00000412985.5	+	31122965,31124141,31124844	31123119,31124263,31125373	0.980000
thyroid_gland_male_adult_54_years	chr3	114380891	114380917	114380891	-	RAMPAGE_only	2	2	9	0.316601	2.641604	chr3	114380802	114381001	SINE|MIR|MIR3	+	chr3	114338652	114383641	ZBTB20|ENST00000474710.5	-	114338652,114350273,114380216,114380776,114383615	114339426,114351878,114380404,114380940,114383641	0.777778
thyroid_gland_male_adult_54_years	chr1	31641127	31641158	31641133	-	RAMPAGE_only	4	4	12	0.422134	2.792481	chr1	31641057	31641163	LINE|L2|L2b	+	chr1	31630788	31644589	PEF1|ENST00000489164.5	-	31630788,31632494,31633158,31635221,31644379	31630842,31632638,31633314,31635522,31644589	0.500000
thyroid_gland_male_adult_54_years	chr5	131315978	131316033	131315978	+	High_confidence	3	3	19	0.668379	3.905765	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131315553	131394667	STRG.32037.5	+	131315553,131359208,131385542,131390992,131391828	131316144,131359547,131385644,131391108,131394667	0.894737
thyroid_gland_male_adult_54_years	chr10	44971686	44971725	44971686	+	High_confidence	15	15	29	1.020158	4.384517	chr10	44971649	44971712	SINE|MIR|MIRb	-	chr10	44971793	44994707	STRG.54995.6	+	44971793,44982520,44984021,44984812,44989273,44989669,44990947,44991904	44971848,44982663,44984113,44984970,44989375,44989721,44991069,44994707	0.724138
thyroid_gland_male_adult_54_years	chr18	46946059	46946153	46946081	+	RAMPAGE_only	6	9	48	1.688538	5.096934	chr18	46945793	46946160	LINE|L2|L2	-	chr18	46917574	47101005	STRG.83173.1	+	46917574,46946056,46946853,47046456,47052879,47054395,47058234,47059555,47062971,47063283,47067020,47069219,47069481,47075276,47077350,47099242,47100253,47100865	46917926,46946546,46946923,47046527,47053046,47054438,47058352,47059654,47063070,47063361,47067119,47069283,47069600,47075368,47077461,47099405,47100356,47101005	0.979167
thyroid_gland_male_adult_54_years	chr14	57274833	57274861	57274844	+	RAMPAGE_only	4	5	16	0.562846	3.106891	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.500000
thyroid_gland_male_adult_54_years	chr17	1769659	1769668	1769659	+	High_confidence	3	3	7	0.246245	2.521641	chr17	1769649	1769740	DNA|TcMar-Tigger|Tigger19a	+	chr17	1770525	1772032	SERPINF1|ENST00000570820.1	+	1770525,1771871	1771184,1772032	0.714286
thyroid_gland_male_adult_54_years	chr15	65300634	65300635	65300634	-	High_confidence	15	15	19	0.668379	3.090033	chr15	65300210	65301637	LTR|ERV1|LTR12C	-	chr15	65266576	65300618	PARP16|ENST00000558873.1	-	65266576,65270934,65282546,65300196	65266768,65271072,65282632,65300618	0.894737
thyroid_gland_male_adult_54_years	chr4	65024450	65024473	65024461	-	High_confidence	10	12	36	1.266403	4.629004	chr4	65024156	65024597	LTR|ERVL-MaLR|MSTB1	-	chr4	64914280	65024485	LINC02232|ENST00000509932.2	-	64914280,64926591,64937606,64939272,64939955,64977488,65004402,65008781,65024236	64917643,64926661,64937839,64939365,64940036,64977629,65004501,65008912,65024485	0.583333
thyroid_gland_male_adult_54_years	chr2	159938668	159938734	159938692	-	RAMPAGE_only	9	9	48	1.688538	4.322233	chr2	159938609	159938818	LTR|Gypsy|LTR81A	+	chr2	159803354	159945000	STRG.12955.3	-	159803354,159806972,159808448,159810525,159815404,159816805,159819725,159831669,159834043,159835479,159840728,159842244,159849979,159850361,159852200,159853272,159853629,159854359,159854903,159858361,159860820,159864838,159872450,159875443,159878323,159878632,159879258,159881082,159882123,159885152,159886419,159890212,159893913,159898687,159904898,159942126	159805222,159807140,159808571,159810675,159815573,159817032,159819920,159831786,159834211,159835645,159840955,159842374,159850140,159850467,159852340,159853352,159853697,159854535,159854939,159858476,159860889,159864920,159872593,159875643,159878493,159878721,159879369,159881240,159882315,159885293,159886530,159890377,159894084,159899059,159941992,159945000	0.958333
thyroid_gland_male_adult_54_years	chr2	218355239	218355258	218355257	-	RAMPAGE_only	4	7	19	0.668379	3.614369	chr2	218354573	218355539	LTR|ERVK|LTR13A	+	chr2	218326240	218357966	CATIP-AS2|NR_125777.1	-	218326240,218327803,218351159,218357913	218327147,218327959,218351226,218357966	0.631579
thyroid_gland_male_adult_54_years	chr7	95869948	95869954	95869948	+	RAMPAGE_only	3	3	8	0.281423	2.521641	chr7	95869931	95869979	LINE|L2|L2	-	chr7	95837617	96028321	DYNC1I1|ENST00000519371.1	+	95837617,95869882,95977511,95984814,95987055,95995947,96028174	95837649,95869998,95977601,95984977,95987155,95996073,96028321	0.625000
thyroid_gland_male_adult_54_years	chr9	92536649	92536675	92536674	-	High_confidence	4	4	8	0.281423	2.750000	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.750000
thyroid_gland_male_adult_54_years	chr9	20658568	20658624	20658607	+	High_confidence	22	27	85	2.990119	4.755307	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658314	20912908	STRG.50048.6	+	20658314,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912908	0.705882
thyroid_gland_male_adult_54_years	chr3	43490757	43490815	43490776	-	High_confidence	85	88	455	16.005929	6.786723	chr3	43490741	43491230	LTR|ERV1|MER50	+	chr3	43365847	43490917	STRG.17985.8	-	43365847,43432610,43490683	43366974,43432727,43490917	0.925275
thyroid_gland_male_adult_54_years	chr5	172854666	172854703	172854682	+	RAMPAGE_only	5	6	28	0.984980	4.235926	chr5	172854401	172854991	DNA|TcMar-Tigger|MER6A	+	chr5	172834274	172952685	ERGIC1|ENST00000393784.7	+	172834274,172888698,172897001,172909666,172914713,172924004,172926508,172932435,172935187,172950708	172834433,172888760,172897074,172909761,172914838,172924109,172926569,172932536,172935310,172952685	0.892857
thyroid_gland_male_adult_54_years	chr9	128684459	128684485	128684473	-	RAMPAGE_only	22	24	144	5.065613	5.344614	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128663133	128663578	HMGA1P4|ENST00000428643.1	-	128663133,128663511	128663400,128663578	0.680556
thyroid_gland_male_adult_54_years	chr14	36173718	36173751	36173750	+	RAMPAGE_only	11	11	22	0.773913	3.458525	chr14	36173688	36175415	LINE|L1|L1MEf	-	chr14	36214606	36235608	AL162511.1|ENST00000556542.1	+	36214606,36215373,36235323	36215058,36215515,36235608	0.727273
thyroid_gland_male_adult_54_years	chr1	16048846	16048862	16048846	+	High_confidence	3	3	8	0.281423	3.000000	chr1	16048792	16048900	SINE|MIR|MIR	+	chr1	16048788	16057308	CLCNKB|ENST00000375667.7	+	16048788,16049617,16049814,16050515,16050874,16051477,16051709,16052197,16053638,16055434,16055677,16056421,16056868	16049245,16049702,16049916,16050600,16051048,16051547,16051820,16052411,16053772,16055523,16055758,16056508,16057308	1.000000
thyroid_gland_male_adult_54_years	chr11	57568212	57568213	57568212	-	High_confidence	8	8	8	0.281423	3.000000	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	1.000000
thyroid_gland_male_adult_54_years	chr17	77324017	77324043	77324042	-	High_confidence	11	13	40	1.407115	4.491220	chr17	77323877	77324327	LTR|ERVL-MaLR|MLT1C	-	chr17	77321085	77324055	STRG.82160.1	-	77321085	77324055	0.925000
thyroid_gland_male_adult_54_years	chr5	109383446	109383498	109383464	-	High_confidence	9	12	65	2.286561	5.280862	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.969231
thyroid_gland_male_adult_54_years	chr19	44914355	44914432	44914409	+	High_confidence	3	3	20	0.703557	3.536887	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.900000
thyroid_gland_male_adult_54_years	chr22	23709161	23709175	23709166	-	RAMPAGE_only	2	2	9	0.316601	2.750000	chr22	23708980	23709629	LINE|L1|L1MA6	+	chr22	23638677	23717267	STRG.90423.1	-	23638677,23640307,23652478,23652860,23659864,23683724,23690231,23700725,23705428,23709129,23709785,23714186,23715008,23717030	23638942,23640423,23652576,23652944,23660000,23683867,23695517,23700845,23705541,23709241,23709867,23714342,23715194,23717267	0.888889
thyroid_gland_male_adult_54_years	chr4	122700441	122700442	122700441	+	High_confidence	54	57	76	2.673518	5.480586	chr4	122700197	122700669	LTR|ERVL|MER70A	+	chr4	122700619	122702644	STRG.26562.1	+	122700619	122702644	0.605263
thyroid_gland_male_adult_54_years	chr2	240022172	240022324	240022172	-	RAMPAGE_only	14	14	68	2.392095	3.832289	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.955882
thyroid_gland_male_adult_54_years	chr11	83617763	83617788	83617783	-	RAMPAGE_only	3	3	12	0.422134	3.459432	chr11	83615996	83617741	LINE|L1|L1ME3	-	chr11	83455176	83682394	DLG2|ENST00000426717.6	-	83455176,83462001,83466707,83469200,83471625,83472726,83483252,83532707,83541681,83633210,83682157	83459924,83462093,83466817,83469373,83471727,83472777,83483298,83532783,83541858,83633325,83682394	0.666667
thyroid_gland_male_adult_54_years	chr19	50835666	50835667	50835666	+	RAMPAGE_only	7	8	10	0.351779	2.947703	chr19	50835604	50835755	SINE|MIR|MIRb	-	chr19	50830529	50851089	AC011523.1|ENST00000598079.1	+	50830529,50831115,50850910	50830564,50831293,50851089	0.500000
thyroid_gland_male_adult_54_years	chr3	164451245	164451328	164451327	+	High_confidence	76	77	284	9.990514	6.760277	chr3	164449656	164452200	LINE|L1|L1PA15	-	chr3	164451263	164535481	STRG.21896.2	+	164451263,164532285	164451535,164535481	0.507042
thyroid_gland_male_adult_54_years	chr19	49086462	49086547	49086546	+	High_confidence	14	15	64	2.251383	5.070623	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.781250
thyroid_gland_male_adult_54_years	chrX	23692227	23692231	23692227	-	High_confidence	217	246	346	12.171542	6.048659	chrX	23691675	23692316	LTR|ERVL|MER21A	-	chrX	23657927	23692288	STRG.92534.1	-	23657927,23692032	23659627,23692288	0.835260
thyroid_gland_male_adult_54_years	chr5	112219334	112219338	112219334	+	RAMPAGE_only	22	22	34	1.196047	4.210765	chr5	112219140	112219503	LTR|ERVL-MaLR|THE1D	+	chr5	112228282	112257309	AC104126.1|ENST00000504004.1	+	112228282,112249597,112250614,112256862	112228352,112249632,112250773,112257309	0.882353
thyroid_gland_male_adult_54_years	chr6	140898421	140898430	140898421	-	RAMPAGE_only	4	6	10	0.351779	2.947703	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140852924	AL035446.1|ENST00000455011.1	-	140845957,140852818	140846304,140852924	0.500000
thyroid_gland_male_adult_54_years	chr13	30376944	30376965	30376944	-	High_confidence	4	4	15	0.527668	3.773557	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30357741	30377145	LINC00426|ENST00000420219.5	-	30357741,30358253,30363160,30372284,30375466,30376826	30357889,30358376,30363226,30372374,30375776,30377145	0.666667
thyroid_gland_male_adult_54_years	chr19	11507465	11507469	11507468	-	High_confidence	3	3	8	0.281423	2.500000	chr19	11507282	11507445	SINE|Alu|FRAM	-	chr19	11506074	11507709	ECSIT|ENST00000585898.1	-	11506074,11507456	11506428,11507709	0.500000
thyroid_gland_male_adult_54_years	chr2	71024055	71024056	71024055	+	High_confidence	4	4	7	0.246245	2.584963	chr2	71020399	71024471	LTR|ERV1|HERVE-int	+	chr2	71024074	71029931	OR7E91P|NR_002185.3	+	71024074,71024305,71028915	71024200,71024394,71029931	0.857143
thyroid_gland_male_adult_54_years	chr13	40868598	40868632	40868598	-	High_confidence	2	2	9	0.316601	2.750000	chr13	40864571	40870598	LINE|L1|L1PA3	-	chr13	40867476	40869205	STRG.68113.1	-	40867476	40869205	0.888889
thyroid_gland_male_adult_54_years	chr1	84298026	84298065	84298026	-	RAMPAGE_only	15	15	79	2.779051	5.523417	chr1	84297928	84298031	SINE|MIR|MIRc	+	chr1	84293457	84299281	STRG.3985.1	-	84293457	84299281	0.962025
thyroid_gland_male_adult_54_years	chr9	136951394	136951395	136951394	+	High_confidence	16	16	16	0.562846	3.125000	chr9	136951254	136951554	SINE|Alu|AluJr	-	chr9	136952315	136955497	LCN12|NM_178536.3	+	136952315,136952891,136953699,136953847,136954153,136955370	136952441,136953028,136953779,136953964,136954255,136955497	0.937500
thyroid_gland_male_adult_54_years	chr21	45562932	45562969	45562932	-	RAMPAGE_only	4	4	17	0.598024	3.734522	chr21	45562422	45564060	LINE|L1|L1MC3	+	chr21	45498200	45544411	SLC19A1|ENST00000567670.5	-	45498200,45525816,45530769,45531388,45537770,45544136	45498612,45525958,45530971,45532148,45538008,45544411	0.705882
thyroid_gland_male_adult_54_years	chr22	23705504	23705531	23705513	-	RAMPAGE_only	6	6	15	0.527668	3.773557	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638677	23717267	STRG.90423.1	-	23638677,23640307,23652478,23652860,23659864,23683724,23690231,23700725,23705428,23709129,23709785,23714186,23715008,23717030	23638942,23640423,23652576,23652944,23660000,23683867,23695517,23700845,23705541,23709241,23709867,23714342,23715194,23717267	0.933333
thyroid_gland_male_adult_54_years	chr21	28090339	28090410	28090409	+	High_confidence	9	11	58	2.040316	3.331886	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.982759
thyroid_gland_male_adult_54_years	chr13	43053971	43053972	43053971	+	RAMPAGE_only	7	7	9	0.316601	2.503258	chr13	43052716	43054750	LINE|L1|L1PB1	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	1.000000
thyroid_gland_male_adult_54_years	chr1	31654265	31654322	31654314	-	RAMPAGE_only	10	10	39	1.371937	4.054222	chr1	31654231	31654348	LINE|L2|L2c	+	chr1	31652587	31663456	COL16A1|ENST00000488897.5	-	31652587,31653598,31653866,31654791,31655313,31656097,31657032,31658487,31658913,31660584,31661065,31661413,31661659,31662333,31662586	31652853,31653676,31654043,31654858,31655502,31656444,31657068,31658577,31658964,31660638,31661119,31661458,31661704,31662387,31663456	0.923077
thyroid_gland_male_adult_54_years	chr18	77127983	77127984	77127983	-	High_confidence	5	5	8	0.281423	2.500000	chr18	77125932	77128521	LINE|L1|L1MD2	+	chr18	77016929	77127945	MBP|ENST00000581878.5	-	77016929,77066297,77105210,77127885	77017268,77066385,77105286,77127945	0.625000
thyroid_gland_male_adult_54_years	chr11	66372460	66372480	66372479	-	High_confidence	6	7	11	0.386957	3.459432	chr11	66372296	66372448	DNA|hAT-Tip100|ORSL-2b	-	chr11	66362520	66372476	SLC29A2|NM_001300868.1	-	66362520,66364224,66365935,66366125,66366430,66367463,66367771,66368536,66369059,66369368,66371243,66371562,66372009,66372357	66363547,66364424,66366021,66366231,66366564,66367548,66367869,66368671,66369199,66369532,66371325,66371646,66372265,66372476	0.909091
thyroid_gland_male_adult_54_years	chr13	93455278	93455304	93455303	+	High_confidence	5	6	11	0.386957	2.921928	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93455119	94407316	STRG.69051.2	+	93455119,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93455438,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407316	0.818182
thyroid_gland_male_adult_54_years	chr2	26298557	26298567	26298566	+	RAMPAGE_only	4	4	12	0.422134	3.277613	chr2	26298403	26299683	LTR|ERV1|HERV15-int	+	chr2	26303047	26305221	STRG.9272.1	+	26303047	26305221	0.500000
thyroid_gland_male_adult_54_years	chr21	8817797	8817799	8817798	+	RAMPAGE_only	35	44	52	1.829249	5.108758	chr21	8817416	8819072	LINE|L1|L1PB	-	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	0.942308
thyroid_gland_male_adult_54_years	chr16	31127392	31127403	31127399	+	High_confidence	8	8	19	0.668379	3.350209	chr16	31127445	31127616	SINE|MIR|MIRc	+	chr16	31127271	31131393	KAT8|ENST00000537402.1	+	31127271,31128049,31130016,31130266,31130455	31127353,31128139,31130157,31130360,31131393	0.526316
thyroid_gland_male_adult_54_years	chr3	15341379	15341380	15341379	-	High_confidence	8	8	8	0.281423	3.000000	chr3	15341159	15341407	LINE|L2|L2a	+	chr3	15255649	15341368	SH3BP5|ENST00000408919.7	-	15255649,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341368	0.875000
thyroid_gland_male_adult_54_years	chr11	64242611	64242621	64242619	+	High_confidence	72	87	143	5.030435	5.662757	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.958042
thyroid_gland_male_adult_54_years	chr1	53258318	53258366	53258318	-	High_confidence	4	4	26	0.914625	4.243856	chr1	53258163	53258293	LINE|L2|L2-3_Crp	-	chr1	53245748	53257323	LRP8|ENST00000529670.5	-	53245748,53246955,53250689,53255116,53257239	53245981,53247056,53250862,53255185,53257323	0.576923
thyroid_gland_male_adult_54_years	chr12	9065161	9065178	9065161	+	High_confidence	4	4	25	0.879447	3.886842	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.640000
thyroid_gland_male_adult_54_years	chr14	92733111	92733148	92733111	-	RAMPAGE_only	8	8	34	1.196047	4.734522	chr14	92732868	92733169	SINE|Alu|AluSg	+	chr14	92703846	92748603	LGMN|ENST00000557609.5	-	92703846,92704639,92706482,92709671,92711658,92711836,92712804,92713822,92714375,92717379,92718746,92732648,92748488	92704361,92704707,92706653,92709872,92711748,92711955,92712871,92713885,92714451,92717461,92718844,92732815,92748603	0.823529
thyroid_gland_male_adult_54_years	chr22	37855576	37855622	37855576	+	RAMPAGE_only	4	4	22	0.773913	3.621928	chr22	37855622	37855711	SINE|tRNA|LFSINE_Vert	+	chr22	37858564	37871290	EIF3L|ENST00000464790.1	+	37858564,37862968,37863271,37870175,37871199	37858740,37863038,37863345,37870347,37871290	0.500000
thyroid_gland_male_adult_54_years	chr6	35680264	35680286	35680264	-	RAMPAGE_only	2	2	7	0.246245	2.521641	chr6	35680148	35680449	SINE|Alu|AluJr	+	chr6	35573589	35688915	STRG.35408.4	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35646162	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35642843,35688915	1.000000
thyroid_gland_male_adult_54_years	chr1	89272819	89272868	89272856	-	High_confidence	22	41	195	6.859684	5.578309	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.979487
thyroid_gland_male_adult_54_years	chr2	86482561	86482578	86482577	+	RAMPAGE_only	12	13	24	0.844269	4.095795	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.625000
thyroid_gland_male_adult_54_years	chr3	33864081	33864119	33864118	+	RAMPAGE_only	5	5	21	0.738735	3.576618	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	0.904762
thyroid_gland_male_adult_54_years	chr2	156254934	156254966	156254962	-	High_confidence	21	24	78	2.743874	5.822078	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156254110	156255025	STRG.12692.1	-	156254110	156255025	0.512821
thyroid_gland_male_adult_54_years	chr1	99993214	99993234	99993214	+	High_confidence	15	24	64	2.251383	4.695501	chr1	99993045	99993378	LINE|L1|L1ME1	-	chr1	99993042	100015341	SLC35A3|ENST00000422078.1	+	99993042,99993536,99999260,100007033,100011364,100015301	99993098,99993741,99999415,100007156,100011533,100015341	0.953125
thyroid_gland_male_adult_54_years	chr9	73080369	73080370	73080369	-	High_confidence	68	73	73	2.567984	4.910591	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.890411
thyroid_gland_male_adult_54_years	chr16	11741950	11741969	11741963	+	High_confidence	4	4	10	0.351779	2.947703	chr16	11741751	11742041	SINE|Alu|AluSx	+	chr16	11741909	11744506	AC007613.1|ENST00000572811.1	+	11741909	11744506	0.900000
thyroid_gland_male_adult_54_years	chr18	47827724	47827758	47827749	+	High_confidence	222	238	1496	52.626087	6.447686	chr18	47827452	47828948	Retroposon|SVA|SVA_B	+	chr18	47827712	47835941	STRG.83181.1	+	47827712,47834840	47828182,47835941	0.982620
thyroid_gland_male_adult_54_years	chr19	5680248	5680261	5680248	-	High_confidence	3	3	11	0.386957	3.277613	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.909091
thyroid_gland_male_adult_54_years	chr20	34369409	34369426	34369409	+	RAMPAGE_only	2	2	10	0.351779	2.947703	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.900000
thyroid_gland_male_adult_54_years	chr15	81995621	81995632	81995621	-	High_confidence	4	5	11	0.386957	3.027169	chr15	81995166	82000000	LINE|L1|L1HS	+	chr15	81953302	81995666	AC025219.1|ENST00000559299.1	-	81953302,81954388,81995426	81953507,81954469,81995666	0.545455
thyroid_gland_male_adult_54_years	chr8	86478002	86478032	86478031	-	High_confidence	3	3	15	0.527668	2.973557	chr8	86477911	86478183	SINE|Alu|AluJb	-	chr8	86474245	86477453	RMDN1|ENST00000517821.1	-	86474245,86474819,86477293	86474358,86474953,86477453	0.800000
thyroid_gland_male_adult_54_years	chr19	52215792	52215808	52215807	+	RAMPAGE_only	3	3	11	0.386957	3.121928	chr19	52215807	52215838	LINE|L2|L2b	-	chr19	52201092	52226417	PPP2R1A|ENST00000462990.5	+	52201092,52201943,52205962,52211259,52212685,52212954,52215778,52216003,52216528,52219690,52220188,52220978,52222098,52225716,52225964	52201694,52202034,52206063,52211492,52212833,52213110,52215893,52216074,52216663,52219864,52220249,52221133,52222241,52225808,52226417	0.909091
thyroid_gland_male_adult_54_years	chr8	102930113	102930136	102930113	+	High_confidence	2	2	12	0.422134	2.855389	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.750000
thyroid_gland_male_adult_54_years	chr11	63570915	63570961	63570915	-	RAMPAGE_only	8	10	34	1.196047	4.616875	chr11	63570833	63570921	SINE|Alu|AluJr	-	chr11	63568547	63571966	STRG.60526.1	-	63568547	63571966	1.000000
thyroid_gland_male_adult_54_years	chr8	30427415	30427491	30427490	+	RAMPAGE_only	5	5	25	0.879447	4.084963	chr8	30427369	30427731	LINE|L2|L2c	+	chr8	30442616	30545591	RBPMS|ENST00000520191.5	+	30442616,30474778,30477798,30479314,30504285,30544493	30442800,30474856,30477837,30479377,30504436,30545591	0.760000
thyroid_gland_male_adult_54_years	chr4	128428000	128428006	128428005	+	High_confidence	29	29	58	2.040316	5.198245	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428009	128505731	STRG.26752.1	+	128428009,128466607,128470049,128470351,128481672,128483328	128428298,128466968,128470216,128470549,128481750,128505731	0.724138
thyroid_gland_male_adult_54_years	chr16	3129639	3129661	3129639	-	RAMPAGE_only	4	4	18	0.633202	3.616875	chr16	3129169	3129828	LTR|ERVL|LTR41	-	chr16	3128832	3132042	ZNF213-AS1|ENST00000573447.1	-	3128832,3131746	3129653,3132042	0.722222
thyroid_gland_male_adult_54_years	chr3	122183645	122183671	122183647	+	High_confidence	4	6	20	0.703557	3.932138	chr3	122183547	122183832	LINE|L2|L2c	-	chr3	122183682	122286497	CASR|NM_000388.3	+	122183682,122253947,122257080,122261527,122275811,122282112,122283686	122183812,122254374,122257387,122262412,122276042,122282236,122286497	0.850000
thyroid_gland_male_adult_54_years	chr18	49872166	49872209	49872174	-	RAMPAGE_only	3	3	11	0.386957	3.321928	chr18	49871998	49872125	SINE|MIR|MIR3	-	chr18	49863261	49876283	MYO5B|ENST00000587895.1	-	49863261,49864140,49872166,49875686,49876235	49863327,49864380,49872232,49875827,49876283	0.909091
thyroid_gland_male_adult_54_years	chr4	141332616	141332617	141332616	-	High_confidence	496	498	611	21.493676	4.953058	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.960720
thyroid_gland_male_adult_54_years	chr19	20409291	20409308	20409291	-	RAMPAGE_only	2	2	8	0.281423	2.807355	chr19	20409218	20409462	SINE|Alu|AluSp	-	chr19	20404966	20424969	ZNF826P|ENST00000597334.1	-	20404966,20408949,20424785	20406132,20409045,20424969	0.625000
thyroid_gland_male_adult_54_years	chr17	67920028	67920114	67920092	+	High_confidence	4	4	23	0.809091	4.055958	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	0.913043
thyroid_gland_male_adult_54_years	chr1	154975497	154975525	154975524	+	High_confidence	5	5	10	0.351779	2.721928	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975530	154979241	CKS1B|ENST00000474215.5	+	154975530,154977986,154978724	154975624,154978114,154979241	0.700000
thyroid_gland_male_adult_54_years	chr19	46350849	46350861	46350849	+	RAMPAGE_only	6	6	11	0.386957	3.121928	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.818182
thyroid_gland_male_adult_54_years	chr2	210225579	210225590	210225579	-	High_confidence	10	10	22	0.773913	3.422578	chr2	210225525	210225678	DNA|hAT-Charlie|Charlie24	-	chr2	210187938	210225491	ACADL|ENST00000233710.3	-	210187938,210192803,210195210,210203330,210204580,210205631,210210195,210216346,210217964,210220646,210225186	210189054,210192890,210195338,210203444,210204682,210205796,210210262,210216511,210218102,210220802,210225491	0.909091
thyroid_gland_male_adult_54_years	chr2	1552455	1552474	1552457	+	High_confidence	3	5	14	0.492490	3.238901	chr2	1552132	1552593	LTR|ERV1|LTR24	-	chr2	1552444	1554701	AC141930.2|ENST00000640435.1	+	1552444,1552737,1554169	1552554,1552857,1554701	0.500000
thyroid_gland_male_adult_54_years	chr13	49495740	49495741	49495740	+	High_confidence	12	12	17	0.598024	3.327820	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495664	49518060	PHF11|ENST00000481509.5	+	49495664,49513058,49518017	49496095,49513166,49518060	0.882353
thyroid_gland_male_adult_54_years	chr12	118126521	118126546	118126521	-	RAMPAGE_only	3	3	14	0.492490	3.392747	chr12	118126091	118126475	LTR|ERVL|MER76	-	chr12	118115269	118135972	STRG.67154.1	-	118115269,118121032,118126480,118135856	118117882,118121175,118126670,118135972	0.571429
thyroid_gland_male_adult_54_years	chrX	54562618	54562619	54562618	+	RAMPAGE_only	8	8	9	0.316601	2.500000	chrX	54562643	54562809	SINE|Alu|AluSx	+	chrX	54530210	54567287	GNL3L|NM_001184819.1	+	54530210,54532519,54539039,54540134,54541272,54542954,54543206,54544222,54548228,54550962,54551567,54551831,54552291,54554564,54558435,54560519	54530419,54532585,54539101,54540242,54541389,54543038,54543342,54544326,54548373,54551050,54551742,54551974,54552428,54554692,54558655,54567287	0.888889
thyroid_gland_male_adult_54_years	chr11	3477038	3477079	3477055	-	RAMPAGE_only	146	151	730	25.679842	5.880994	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3475387	3478185	STRG.58347.1	-	3475387,3476942	3476373,3478185	0.932877
thyroid_gland_male_adult_54_years	chr19	49867879	49867894	49867879	-	High_confidence	2	2	9	0.316601	2.500000	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49863730	49867880	PNKP|ENST00000636214.1	-	49863730,49863963,49864178,49864323,49865126,49866398,49867053,49867678	49863760,49864071,49864236,49864403,49865242,49866445,49867217,49867880	0.666667
thyroid_gland_male_adult_54_years	chr11	74328376	74328388	74328387	+	High_confidence	5	6	12	0.422134	3.277613	chr11	74327828	74329146	Retroposon|SVA|SVA_B	+	chr11	74329342	74368823	STRG.61058.1	+	74329342,74368064	74329488,74368823	0.750000
thyroid_gland_male_adult_54_years	chr10	32446964	32446978	32446977	+	High_confidence	5	6	10	0.351779	2.725481	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.900000
thyroid_gland_male_adult_54_years	chr19	48270910	48270915	48270914	+	High_confidence	5	5	9	0.316601	3.000000	chr19	48270796	48271084	SINE|Alu|AluYc	+	chr19	48271055	48287070	ZNF114|ENST00000600687.5	+	48271055,48271286,48279730,48282370,48285760	48271119,48271449,48279808,48282497,48287070	0.888889
thyroid_gland_male_adult_54_years	chr5	91314125	91314142	91314125	-	High_confidence	5	5	28	0.984980	4.307355	chr5	91313947	91314128	LINE|L2|L2c	+	chr5	91302730	91314298	LUCAT1|ENST00000648636.1	-	91302730,91310855,91313637,91314079	91303161,91311032,91313777,91314298	0.535714
thyroid_gland_male_adult_54_years	chr19	9140393	9140428	9140427	+	High_confidence	33	33	106	3.728854	5.656735	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.830189
thyroid_gland_male_adult_54_years	chr19	45450739	45450766	45450765	-	High_confidence	5	5	14	0.492490	3.182006	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.928571
thyroid_gland_male_adult_54_years	chr21	44770591	44770620	44770619	-	RAMPAGE_only	7	11	19	0.668379	3.511085	chr21	44770419	44770716	SINE|Alu|AluSc8	-	chr21	44769039	44775436	UBE2G2|ENST00000481546.1	-	44769039,44773546	44771489,44775436	1.000000
thyroid_gland_male_adult_54_years	chr9	129489234	129489253	129489234	+	High_confidence	3	3	8	0.281423	2.521641	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.750000
thyroid_gland_male_adult_54_years	chr11	57425751	57425784	57425778	-	High_confidence	7	7	28	0.984980	3.383793	chr11	57425746	57425858	LINE|CR1|L3	-	chr11	57417879	57425856	SLC43A3|ENST00000529113.5	-	57417879,57420971,57421296,57423981,57425540	57417887,57421064,57421373,57424028,57425856	0.607143
thyroid_gland_male_adult_54_years	chr15	92914950	92914974	92914973	+	RAMPAGE_only	5	5	16	0.562846	3.625000	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92924277	92997069	CHD2|ENST00000637572.1	+	92924277,92927243,92929029,92937517,92939577,92941821,92942842,92944414,92945820,92946037,92948951,92953356,92955422,92956458,92967324,92971764,92972264,92974878,92978233,92979134,92980814,92981364,92984329,92985497,92991475,92992858,92996956	92924552,92927330,92929091,92937625,92939718,92941955,92943068,92944515,92945865,92946216,92949076,92954336,92955512,92956649,92967513,92971927,92972417,92974950,92978383,92979283,92980911,92981457,92984500,92985673,92991517,92992998,92997069	0.875000
thyroid_gland_male_adult_54_years	chr12	109113097	109113108	109113097	+	RAMPAGE_only	3	3	6	0.211067	2.584963	chr12	109112836	109113146	DNA|hAT-Charlie|MER58B	-	chr12	109111217	109139910	STRG.66882.13	+	109111217,109113094,109139396	109111472,109113415,109139910	1.000000
thyroid_gland_male_adult_54_years	chr1	200411661	200411691	200411690	+	High_confidence	5	7	16	0.562846	3.500000	chr1	200411470	200412304	LTR|ERVL|MER21B	+	chr1	200411693	200478360	AC104461.1|ENST00000647823.1	+	200411693,200444617,200472040,200473908,200477967	200411962,200444945,200472119,200474186,200478360	0.750000
thyroid_gland_male_adult_54_years	chr5	117454948	117454966	117454949	+	High_confidence	48	81	175	6.156127	6.384384	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.668571
thyroid_gland_male_adult_54_years	chr2	85354337	85354405	85354363	-	High_confidence	5	5	19	0.668379	3.721612	chr2	85354216	85354326	SINE|MIR|MIR1_Amn	-	chr2	85349431	85354506	RETSAT|ENST00000409984.2	-	85349431,85350039,85350779,85354335	85349581,85350241,85351021,85354506	0.947368
thyroid_gland_male_adult_54_years	chr1	56569868	56569889	56569888	-	RAMPAGE_only	15	17	26	0.914625	4.180833	chr1	56569708	56570129	LINE|L2|L2c	+	chr1	56494746	56579568	PLPP3|ENST00000371250.3	-	56494746,56511975,56523822,56524276,56536954,56578877	56496676,56512152,56523880,56524554,56537112,56579568	0.500000
thyroid_gland_male_adult_54_years	chr9	135444102	135444122	135444102	-	High_confidence	2	2	10	0.351779	2.947703	chr9	135440176	135444140	LTR|ERV1|HERVE-int	-	chr9	135428801	135444309	STRG.53762.3	-	135428801	135444309	0.600000
thyroid_gland_male_adult_54_years	chr3	80770347	80770413	80770347	-	High_confidence	16	18	86	3.025296	5.841571	chr3	80769735	80770387	LTR|ERV1|LTR1A1	-	chr3	80761452	80770093	STRG.19369.1	-	80761452,80769758	80761573,80770093	0.546512
thyroid_gland_male_adult_54_years	chr4	40544460	40544496	40544495	-	RAMPAGE_only	4	5	19	0.668379	3.614369	chr4	40544455	40544556	SINE|MIR|MIR1_Amn	+	chr4	40423254	40515973	RBM47|NM_019027.3	-	40423254,40432650,40437770,40466576,40515866	40426143,40432862,40438924,40466699,40515973	0.578947
thyroid_gland_male_adult_54_years	chr10	49077445	49077446	49077445	-	RAMPAGE_only	5	5	7	0.246245	2.584963	chr10	49077426	49078858	LINE|L1|L1MD1	+	chr10	49014244	49115509	VSTM4|ENST00000332853.8	-	49014244,49046982,49048477,49064702,49077218,49085954,49107593,49115430	49019775,49047044,49048584,49064736,49077326,49086023,49107995,49115509	0.571429
thyroid_gland_male_adult_54_years	chr2	189571739	189571748	189571747	-	RAMPAGE_only	4	4	8	0.281423	2.521641	chr2	189571695	189571755	LINE|CR1|L3	+	chr2	189560578	189580741	STRG.14014.1	-	189560578,189563583,189565353,189571714,189572845,189575160,189578218,189579812,189580417	189562191,189564225,189565599,189571841,189572961,189575320,189578353,189579880,189580741	0.750000
thyroid_gland_male_adult_54_years	chr8	109487619	109487660	109487653	+	RAMPAGE_only	12	12	29	1.020158	4.392127	chr8	109487465	109487732	LINE|L1|L1MC5	-	chr8	109362476	109537018	STRG.48447.3	+	109362476,109364546,109381369,109382462,109384069,109385536,109388496,109389078,109390451,109394414,109396026,109398458,109400075,109401496,109404553,109404994,109406334,109408048,109409864,109412264,109413420,109419096,109420517,109425084,109427001,109429339,109429931,109433105,109435189,109438896,109441274,109442006,109442945,109444660,109448142,109449337,109450974,109452123,109452717,109454166,109454722,109456261,109459594,109461771,109464215,109466577,109475117,109476507,109477224,109481432,109482986,109485043,109486647,109490971,109491872,109493660,109496918,109497149,109498461,109498654,109507662,109508096,109510776,109515169,109518166,109522185,109522743,109523232,109526783,109530633	109362653,109364636,109381514,109382571,109384127,109385630,109388550,109389152,109390494,109394485,109396137,109398548,109400344,109401588,109404713,109405130,109406478,109408206,109409978,109412414,109413545,109419260,109420690,109425232,109427156,109429462,109430037,109433216,109438456,109440852,109441379,109442195,109443902,109445645,109448391,109449487,109451149,109452280,109452874,109454246,109454852,109456391,109459836,109461908,109465245,109466769,109475269,109476667,109480139,109481562,109483105,109485173,109490055,109491101,109491994,109493751,109497067,109497272,109498573,109504492,109507895,109508264,109510934,109515305,109518508,109522337,109522890,109523386,109527020,109537018	0.965517
thyroid_gland_male_adult_54_years	chr14	80957132	80957177	80957164	+	RAMPAGE_only	40	40	328	11.538340	6.426961	chr14	80957036	80957463	LINE|L2|L2c	+	chr14	80955654	81108918	TSHR|ENST00000554263.5	+	80955654,81062147,81068253,81087953,81091068,81092530,81096638,81108374	80955850,81062219,81068328,81088028,81091143,81092608,81096707,81108918	0.756098
thyroid_gland_male_adult_54_years	chr17	59619856	59619923	59619894	+	High_confidence	2262	2457	6771	238.189331	5.439914	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.950229
thyroid_gland_male_adult_54_years	chr6	99521921	99521927	99521926	-	High_confidence	6	6	13	0.457312	3.238901	chr6	99521850	99522167	SINE|Alu|AluJr	-	chr6	99508725	99521728	USP45|ENST00000508908.1	-	99508725,99510120,99520939,99521650	99508782,99510230,99521163,99521728	0.538462
thyroid_gland_male_adult_54_years	chrX	91250976	91250977	91250976	+	RAMPAGE_only	9	9	13	0.457312	3.238901	chrX	91250532	91251211	LINE|L1|L1M3b	-	chrX	91307780	91308878	AL121823.1|ENST00000418369.1	+	91307780,91308289	91307932,91308878	1.000000
thyroid_gland_male_adult_54_years	chr19	18938382	18938395	18938382	-	High_confidence	8	8	15	0.527668	3.378783	chr19	18938201	18938361	SINE|MIR|MIR3	-	chr19	18929438	18938982	HOMER3|ENST00000594439.5	-	18929438,18931324,18931508,18931975,18932923,18938352,18938727,18938968	18929634,18931411,18931625,18932132,18933045,18938484,18938884,18938982	0.933333
thyroid_gland_male_adult_54_years	chr2	56192040	56192045	56192044	+	RAMPAGE_only	20	20	32	1.125692	4.220168	chr2	56192020	56192167	SINE|MIR|MIRb	+	chr2	56184122	56386174	CCDC85A|NM_001080433.1	+	56184122,56192476,56342878,56372343,56375815,56384265	56184900,56193440,56342955,56372478,56375935,56386174	0.968750
thyroid_gland_male_adult_54_years	chr4	4269605	4269614	4269613	-	High_confidence	20	23	62	2.181028	3.414872	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	1.000000
thyroid_gland_male_adult_54_years	chrY	3002785	3002801	3002794	-	High_confidence	6	6	18	0.633202	3.852169	chrY	3002436	3002992	LTR|ERV1|LTR4	+	chrY	2966843	3002626	ZFY-AS1|ENST00000417305.1	-	2966843,2981837,3002312	2966939,2981927,3002626	0.777778
thyroid_gland_male_adult_54_years	chr1	78620056	78620058	78620057	+	High_confidence	17	27	27	0.949802	4.458591	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.814815
thyroid_gland_male_adult_54_years	chr18	7946867	7946898	7946878	+	High_confidence	46	48	157	5.522925	5.701756	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.815287
thyroid_gland_male_adult_54_years	chr15	32613834	32613835	32613834	+	High_confidence	6	7	9	0.316601	2.500000	chr15	32613860	32614055	LINE|CR1|L3	+	chr15	32613732	32615111	AC123768.2|ENST00000500941.2	+	32613732,32614108,32614739	32613998,32614202,32615111	0.777778
thyroid_gland_male_adult_54_years	chr19	35899320	35899345	35899344	-	High_confidence	6	6	19	0.668379	3.614369	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35887951	35899737	NFKBID|NM_001321831.1	-	35887951,35889889,35890373,35895979,35896217,35896391,35896725,35896912,35897650,35898471,35898718,35899706	35888612,35890054,35890490,35896128,35896269,35896538,35896831,35897103,35897838,35898532,35898822,35899737	0.894737
thyroid_gland_male_adult_54_years	chr22	19423136	19423156	19423155	-	RAMPAGE_only	4	5	8	0.281423	3.000000	chr22	19423144	19423261	LINE|L2|L2a	+	chr22	19351367	19431733	STRG.90257.5	-	19351367,19353355,19353995,19355759,19356229,19356889,19359335,19361236,19361726,19375630,19377868,19383619,19385520,19387710,19388483,19392100,19394341,19396786,19397991,19405785,19407183,19408273,19410715,19423016	19351446,19353519,19354118,19355865,19356288,19357051,19359484,19361341,19361931,19375792,19378066,19383705,19385736,19387816,19388554,19392214,19394509,19396947,19398087,19405880,19407274,19408593,19410778,19431733	0.625000
thyroid_gland_male_adult_54_years	chr9	127762417	127762431	127762417	-	High_confidence	3	3	10	0.351779	2.725481	chr9	127762302	127762854	LINE|L2|L2a	+	chr9	127738316	127762418	SH2D3C|NM_001142532.1	-	127738316,127739681,127740257,127741787,127742848,127744563,127747146,127749210,127751171,127761610,127762120	127738921,127739888,127740369,127741959,127742964,127745099,127747271,127749665,127751300,127761650,127762418	0.800000
thyroid_gland_male_adult_54_years	chr15	55513939	55513971	55513953	-	RAMPAGE_only	5	5	18	0.633202	3.734522	chr15	55513405	55516274	LTR|ERV1|HERVE_a-int	-	chr15	55417754	55508234	DYX1C1|NM_001033560.1	-	55417754,55434904,55439471,55450221,55466929,55491122,55497711,55498206,55508121	55418133,55435058,55439581,55450367,55467161,55491256,55497859,55498584,55508234	0.500000
thyroid_gland_male_adult_54_years	chr12	104030726	104030754	104030726	+	High_confidence	29	31	44	1.547826	5.016089	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.840909
thyroid_gland_male_adult_54_years	chr16	20446996	20446997	20446996	-	High_confidence	6	6	6	0.211067	2.584963	chr16	20446813	20447004	SINE|MIR|MIRb	+	chr16	20441249	20447000	AC137056.1|ENST00000575772.1	-	20441249,20442225,20445992,20446866	20441586,20442388,20446111,20447000	0.666667
thyroid_gland_male_adult_54_years	chr3	12994709	12994720	12994717	-	High_confidence	2	2	7	0.246245	2.584963	chr3	12994635	12994703	SINE|MIR|MIRc	-	chr3	12908348	12994384	IQSEC1|ENST00000648386.1	-	12908348,12909272,12911628,12913427,12915103,12915593,12920429,12922119,12924580,12935447,12941570,12994080	12908525,12909434,12911728,12913553,12915133,12915733,12920596,12922242,12924742,12936697,12941865,12994384	0.714286
thyroid_gland_male_adult_54_years	chr8	11864408	11864460	11864408	-	RAMPAGE_only	9	9	59	2.075494	5.005110	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.525424
thyroid_gland_male_adult_54_years	chr3	125323681	125323726	125323709	-	RAMPAGE_only	7	7	37	1.301581	4.307715	chr3	125323678	125323983	SINE|Alu|AluY	+	chr3	125313414	125357280	ZNF148|ENST00000495019.5	-	125313414,125323308,125331157,125356976	125313656,125323444,125331238,125357280	0.513514
thyroid_gland_male_adult_54_years	chr8	39902303	39902314	39902313	+	High_confidence	6	6	11	0.386957	2.913977	chr8	39902359	39903639	LTR|ERV1|LTR49-int	+	chr8	39902274	39918138	IDO1|ENST00000518804.5	+	39902274,39909178,39913888,39917874,39918087	39902448,39909348,39914009,39917970,39918138	0.636364
thyroid_gland_male_adult_54_years	chr1	238485982	238486036	238486024	-	High_confidence	5	6	58	2.040316	5.183508	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480440	238486023	LINC01139|ENST00000649681.1	-	238480440	238486023	1.000000
thyroid_gland_male_adult_54_years	chr3	37683616	37683703	37683694	+	High_confidence	15	15	90	3.166008	5.697587	chr3	37683583	37683799	SINE|MIR|MIRc	-	chr3	37683875	37823514	STRG.17766.3	+	37683875,37732711,37736903,37741729,37743925,37750461,37777391,37779901,37784976,37791405,37803822,37818890	37684015,37732798,37736983,37741819,37744034,37750569,37777517,37780021,37785078,37791734,37803942,37823514	0.600000
thyroid_gland_male_adult_54_years	chrX	48683361	48683363	48683362	+	High_confidence	9	17	17	0.598024	3.381580	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
thyroid_gland_male_adult_54_years	chr4	56977899	56977912	56977899	+	High_confidence	4	4	8	0.281423	2.750000	chr4	56977901	56978210	SINE|Alu|AluY	+	chr4	56977781	56978961	POLR2B|ENST00000495311.1	+	56977781,56978639	56978000,56978961	0.625000
thyroid_gland_male_adult_54_years	chr20	15328244	15328293	15328272	+	RAMPAGE_only	10	23	78	2.743874	5.056836	chr20	15327854	15328480	LINE|L2|L2a	-	chr20	15196857	16053197	MACROD2|ENST00000402914.5	+	15196857,15229939,15431404,15499773,15862744,15885763,15933275,15937475,15967552,15986726,15987065,16041200,16044570,16049829	15197032,15230061,15431435,15499847,15862826,15885811,15933338,15937544,15967630,15986801,15987158,16041278,16044639,16053197	0.730769
thyroid_gland_male_adult_54_years	chr8	42398408	42398409	42398408	+	RAMPAGE_only	5	5	8	0.281423	2.521641	chr8	42398281	42398526	SINE|Alu|AluSz6	-	chr8	42399549	42401905	VDAC3|ENST00000522178.1	+	42399549,42401787	42399703,42401905	0.625000
thyroid_gland_male_adult_54_years	chr8	132983181	132983309	132983270	+	RAMPAGE_only	9	10	83	2.919763	5.018372	chr8	132983219	132983275	SINE|MIR|MIR	-	chr8	132969485	132983753	TG|ENST00000520089.5	+	132969485,132971793,132972597,132983349	132969569,132971873,132972741,132983753	0.915663
thyroid_gland_male_adult_54_years	chr2	113237200	113237323	113237322	-	High_confidence	5	6	49	1.723715	4.886842	chr2	113237242	113237460	SINE|MIR|MIRc	-	chr2	113225596	113237508	PAX8|ENST00000485840.1	-	113225596,113235393,113236600	113227256,113235582,113237508	0.959184
thyroid_gland_male_adult_54_years	chr4	101669383	101669398	101669383	+	RAMPAGE_only	3	3	8	0.281423	2.500000	chr4	101669401	101672686	LTR|ERV1|MER57-int	+	chr4	101419960	102074812	BANK1|ENST00000504592.5	+	101419960,101422632,101669402,101671072,101721363,101829807,101855034,101862525,101870504,101895304,101917992,102021513,102025200,102029959,102043838,102060210,102063074,102071274,102072344,102073683,102074004	101420097,101422658,101669523,101671161,101721433,101830206,101855189,101862664,101870644,101895410,101918189,102021592,102025509,102030265,102043907,102060389,102063138,102071304,102072400,102073748,102074812	0.500000
thyroid_gland_male_adult_54_years	chr12	21818179	21818192	21818179	-	RAMPAGE_only	6	6	13	0.457312	2.815072	chr12	21817882	21818136	LINE|L1|L1PA8A	-	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	1.000000
thyroid_gland_male_adult_54_years	chr17	75498232	75498258	75498257	+	High_confidence	5	5	14	0.492490	3.546594	chr17	75498201	75498275	LINE|L2|L2-1_Crp	+	chr17	75498216	75498814	TMEM94|ENST00000577194.1	+	75498216,75498443	75498323,75498814	0.571429
thyroid_gland_male_adult_54_years	chr7	103353922	103353957	103353922	+	High_confidence	6	6	20	0.703557	3.821928	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.700000
thyroid_gland_male_adult_54_years	chr6	144533141	144533178	144533141	+	RAMPAGE_only	4	6	22	0.773913	3.970573	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144318714	144678552	STRG.38834.3	+	144318714,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405	144331018,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678552	0.863636
thyroid_gland_male_adult_54_years	chr8	53523862	53523891	53523862	-	High_confidence	4	4	16	0.562846	3.625000	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.875000
thyroid_gland_male_adult_54_years	chr4	87531027	87531054	87531027	-	RAMPAGE_only	2	2	11	0.386957	3.459432	chr4	87530812	87530989	SINE|MIR|MIR1_Amn	-	chr4	87473334	87529504	SPARCL1|ENST00000282470.10	-	87473334,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87499585,87529504	0.909091
thyroid_gland_male_adult_54_years	chr1	39528349	39528605	39528604	+	RAMPAGE_only	23	26	253	8.900000	4.287982	chr1	39528640	39528699	SINE|MIR|MIRb	+	chr1	39491645	39529869	BMP8A|NM_181809.3	+	39491645,39511173,39511755,39521375,39522402,39523006,39525648	39492325,39511363,39511904,39521570,39522482,39523117,39529869	0.988142
thyroid_gland_male_adult_54_years	chr6	130978738	130978739	130978738	-	High_confidence	6	6	7	0.246245	2.584963	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.714286
thyroid_gland_male_adult_54_years	chr2	227164620	227164645	227164620	+	High_confidence	32	32	63	2.216206	5.723312	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.619048
thyroid_gland_male_adult_54_years	chr7	153969320	153969323	153969322	+	RAMPAGE_only	3	6	7	0.246245	2.584963	chr7	153969248	153969400	LINE|L1|L1M4	-	chr7	153887096	154894290	DPP6|NM_001039350.2	+	153887096,154446213,154474938,154540531,154566841,154637820,154669359,154727766,154769416,154772844,154794078,154795844,154801354,154803863,154804916,154806993,154853779,154867994,154872623,154875905,154880887,154885632,154887675,154889271,154889456,154892333	153887734,154446328,154475037,154540626,154566916,154637873,154669441,154727887,154769571,154772942,154794202,154795883,154801462,154803955,154804964,154807112,154853827,154868093,154872693,154876100,154880942,154885744,154887734,154889344,154889530,154894290	0.571429
thyroid_gland_male_adult_54_years	chr2	47369479	47369501	47369479	+	High_confidence	162	174	763	26.840712	7.209000	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369494	47414437	STRG.9908.4	+	47369494,47373462,47373807,47375233,47377013,47378952,47379768,47385165,47386571,47414418	47369581,47373570,47374048,47375299,47377077,47379054,47379969,47385210,47386912,47414437	0.986894
thyroid_gland_male_adult_54_years	chr18	73691288	73691305	73691288	-	High_confidence	23	24	50	1.758893	5.129057	chr18	73691250	73691410	LTR|ERV1|MER41C	+	chr18	73647730	73691316	STRG.83724.1	-	73647730,73653601,73691228	73648396,73653732,73691316	0.520000
thyroid_gland_male_adult_54_years	chr2	227534916	227534929	227534916	+	RAMPAGE_only	4	5	12	0.422134	2.594907	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.833333
thyroid_gland_male_adult_54_years	chr8	132912813	132912846	132912813	+	RAMPAGE_only	3	3	17	0.598024	3.499228	chr8	132912784	132912975	SINE|MIR|MIR3	+	chr8	132897747	133017967	STRG.55349.4	+	132897747,132898168,132898797,132900236,132901352,132906687,132908185,132911376,132913046,132919375,132923337,132929075,132933560,132935755,132941350,132948775,132961007,132961831,132966559,132967793,132969457,132971793,132972597,132983349,133011900,133013599,133017777	132897786,132898246,132898910,132900339,132901553,132906900,132908340,132911533,132913265,132919525,132923508,132929192,132933676,132935864,132941542,132948943,132961073,132963074,132966697,132967970,132969569,132971873,132972741,132983412,133012035,133013764,133017967	0.529412
thyroid_gland_male_adult_54_years	chr5	73078286	73078289	73078287	+	RAMPAGE_only	2	5	8	0.281423	2.807355	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.875000
thyroid_gland_male_adult_54_years	chr15	45118545	45118584	45118568	-	RAMPAGE_only	2	2	10	0.351779	2.725481	chr15	45118509	45118643	SINE|MIR|MIRc	-	chr15	45092654	45122953	STRG.74866.1	-	45092654,45094562,45094935,45095436,45095827,45097237,45097613,45098008,45099382,45099661,45100049,45100754,45101204,45101792,45103959,45104139,45105642,45106124,45106527,45106831,45107344,45108046,45108788,45109523,45109889,45110427,45110649,45111110,45111383,45111767,45112553,45112986,45113341,45113972,45117903,45120102,45120591,45121086,45122184,45122867	45094272,45094691,45095091,45095595,45096060,45097391,45097741,45098058,45099482,45099892,45100228,45100838,45101274,45101989,45104053,45104365,45105828,45106327,45106641,45106969,45107463,45108222,45108952,45109626,45109980,45110524,45110710,45111277,45111585,45111955,45112718,45113076,45113425,45117809,45119365,45120320,45120805,45121221,45122242,45122953	0.900000
thyroid_gland_male_adult_54_years	chr19	55280217	55280236	55280217	-	High_confidence	5	9	19	0.668379	2.768854	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.947368
thyroid_gland_male_adult_54_years	chr19	38289157	38289181	38289157	+	High_confidence	2	2	14	0.492490	3.521641	chr19	38289206	38289513	SINE|Alu|AluSc8	+	chr19	38288405	38292468	SPINT2|ENST00000585357.1	+	38288405,38290536	38290280,38292468	1.000000
thyroid_gland_male_adult_54_years	chr12	6453615	6453688	6453687	+	RAMPAGE_only	4	5	20	0.703557	3.208695	chr12	6453735	6454042	SINE|Alu|AluSq2	+	chr12	6452485	6462277	TAPBPL|ENST00000543567.5	+	6452485,6453066,6453446,6457405,6458644,6460854,6462033	6452619,6453297,6453716,6457744,6458947,6460938,6462277	1.000000
thyroid_gland_male_adult_54_years	chr11	65382789	65382790	65382789	-	High_confidence	7	8	9	0.316601	2.750000	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.888889
thyroid_gland_male_adult_54_years	chr17	68248551	68248558	68248551	+	High_confidence	3	3	8	0.281423	3.000000	chr17	68248543	68248580	LINE|L2|L2c	-	chr17	68248503	68257090	AMZ2|ENST00000577866.5	+	68248503,68249010,68250187,68250793,68251049,68254403,68255699,68256813	68248705,68249096,68250470,68250967,68251178,68254567,68255876,68257090	1.000000
thyroid_gland_male_adult_54_years	chr8	132867881	132867946	132867881	+	High_confidence	6	6	34	1.196047	3.676458	chr8	132867801	132867981	SINE|MIR|MIRc	+	chr8	132866960	133134897	TG|ENST00000220616.8	+	132866960,132868114,132869728,132871347,132873061,132881862,132882468,132882813,132886447,132887983,132893689,132897648,132898168,132898797,132900236,132901352,132906687,132908185,132911376,132913046,132919375,132923337,132929075,132933560,132935755,132941350,132948775,132961007,132962993,132966559,132967793,132969457,132971793,132972597,132983349,133011900,133013599,133017777,133019601,133021990,133029820,133095043,133096205,133113421,133116608,133131811,133133469,133134675	132867067,132868223,132869826,132871551,132873221,132881969,132882612,132882999,132887548,132888568,132893929,132897786,132898246,132898910,132900339,132901553,132906900,132908340,132911533,132913265,132919525,132923508,132929192,132933676,132935864,132941542,132948943,132961073,132963074,132966697,132967970,132969569,132971873,132972741,132983412,133012035,133013764,133017997,133019695,133022150,133030023,133095208,133096373,133113603,133116716,133131946,133133660,133134897	0.676471
thyroid_gland_male_adult_54_years	chr2	143247332	143247350	143247332	+	RAMPAGE_only	3	3	7	0.246245	2.521641	chr2	143246994	143247508	LTR|ERVL|LTR32	+	chr2	143129329	143768352	ARHGAP15|NM_018460.3	+	143129329,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.857143
thyroid_gland_male_adult_54_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	7	7	8	0.281423	2.807355	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.750000
thyroid_gland_male_adult_54_years	chr4	141688924	141688944	141688924	+	RAMPAGE_only	3	4	8	0.281423	2.521641	chr4	141688840	141690423	LTR|ERV1|LTR12C	-	chr4	141636848	141712566	STRG.26940.6	+	141636848,141656185,141688821,141709055	141637224,141656307,141709003,141712566	0.750000
thyroid_gland_male_adult_54_years	chr2	210225533	210225534	210225533	-	High_confidence	6	6	9	0.316601	2.947703	chr2	210225525	210225678	DNA|hAT-Charlie|Charlie24	-	chr2	210187938	210225491	ACADL|ENST00000233710.3	-	210187938,210192803,210195210,210203330,210204580,210205631,210210195,210216346,210217964,210220646,210225186	210189054,210192890,210195338,210203444,210204682,210205796,210210262,210216511,210218102,210220802,210225491	1.000000
thyroid_gland_male_adult_54_years	chr6	144533090	144533106	144533092	+	RAMPAGE_only	3	5	12	0.422134	3.418296	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144318714	144678552	STRG.38834.3	+	144318714,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405	144331018,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678552	1.000000
thyroid_gland_male_adult_54_years	chr19	58381340	58381385	58381384	+	High_confidence	7	9	29	1.020158	4.112821	chr19	58381391	58381508	DNA|hAT-Charlie|MER5B	+	chr19	58381582	58382081	STRG.86944.1	+	58381582	58382081	0.724138
thyroid_gland_male_adult_54_years	chr2	71417037	71417058	71417057	+	RAMPAGE_only	9	11	31	1.090514	4.631616	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.870968
thyroid_gland_male_adult_54_years	chr5	72896524	72896543	72896542	+	RAMPAGE_only	3	3	13	0.457312	3.026987	chr5	72896587	72896884	SINE|Alu|AluSx1	+	chr5	72893675	72905580	TNPO1|ENST00000605210.1	+	72893675,72896457,72897055,72900005,72900973,72903708,72905302	72893703,72896556,72897151,72900081,72901073,72903783,72905580	0.692308
thyroid_gland_male_adult_54_years	chr2	174410019	174410040	174410028	+	High_confidence	3	4	12	0.422134	3.027169	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410036	174428859	SCRN3|ENST00000548921.5	+	174410036,174422884,174424474,174427712	174410225,174423047,174424649,174428859	0.666667
thyroid_gland_male_adult_54_years	chr1	206054989	206055171	206054989	+	RAMPAGE_only	14	15	119	4.186166	3.079184	chr1	206054885	206058429	LTR|ERV1|Harlequin-int	+	chr1	206035186	206061913	STRG.6856.1	+	206035186,206041565,206051741,206053020,206061344,206061661	206035299,206041678,206052001,206060449,206061397,206061913	1.000000
thyroid_gland_male_adult_54_years	chr1	205917590	205917607	205917590	-	High_confidence	7	7	23	0.809091	3.427333	chr1	205917586	205917804	SINE|MIR|MIRc	+	chr1	205912343	205917658	STRG.6837.1	-	205912343,205917282,205917499	205915404,205917354,205917658	0.869565
thyroid_gland_male_adult_54_years	chr1	27155470	27155491	27155490	-	High_confidence	8	8	18	0.633202	2.969389	chr1	27155432	27155584	SINE|MIR|MIR	+	chr1	27098808	27155130	SLC9A1|NM_003047.4	-	27098808,27101202,27101724,27102015,27102384,27102672,27103222,27105884,27107647,27109526,27113825,27153982	27100644,27101275,27101826,27102130,27102558,27102743,27103312,27106087,27107865,27109777,27114286,27155130	1.000000
thyroid_gland_male_adult_54_years	chr17	2975600	2975661	2975660	+	High_confidence	10	11	46	1.618182	4.923352	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2975616	3037716	STRG.79464.1	+	2975616,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2975775,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037716	0.978261
thyroid_gland_male_adult_54_years	chr19	58306141	58306164	58306141	+	High_confidence	6	7	17	0.598024	3.750000	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58315202	STRG.86957.4	+	58305376,58306087,58314747	58305445,58312462,58315202	0.941176
thyroid_gland_male_adult_54_years	chr4	102431228	102431260	102431259	-	High_confidence	5	7	26	0.914625	4.133661	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.692308
thyroid_gland_male_adult_54_years	chr2	44327027	44327035	44327028	-	RAMPAGE_only	31	43	75	2.638340	5.264814	chr2	44326986	44327071	DNA|hAT-Charlie|MER58C	+	chr2	44320265	44323342	PREPL|ENST00000444696.5	-	44320265,44322730,44323261	44320643,44322854,44323342	0.626667
thyroid_gland_male_adult_54_years	chr1	39310278	39310307	39310294	+	RAMPAGE_only	3	4	14	0.492490	3.378783	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	1.000000
thyroid_gland_male_adult_54_years	chr21	33448785	33448835	33448834	-	High_confidence	6	6	29	1.020158	3.763966	chr21	33448743	33448924	SINE|Alu|AluJo	+	chr21	33432484	33448964	TMEM50B|ENST00000484377.5	-	33432484,33436882,33439213,33448781	33432802,33436992,33439297,33448964	0.931034
thyroid_gland_male_adult_54_years	chr15	90467526	90467554	90467553	+	RAMPAGE_only	4	4	16	0.562846	3.640224	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.562500
thyroid_gland_male_adult_54_years	chr22	49925420	49925454	49925451	+	RAMPAGE_only	6	8	26	0.914625	3.593270	chr22	49925493	49925572	LINE|CR1|L3b	+	chr22	49923209	49927528	CRELD2|ENST00000487969.1	+	49923209,49927254	49925557,49927528	0.923077
thyroid_gland_male_adult_54_years	chr15	57451509	57451576	57451564	+	RAMPAGE_only	7	10	65	2.286561	4.429308	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
thyroid_gland_male_adult_54_years	chr16	15798662	15798665	15798664	-	RAMPAGE_only	10	12	16	0.562846	3.456565	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.812500
thyroid_gland_male_adult_54_years	chr2	46903975	46904026	46904024	-	RAMPAGE_only	7	11	47	1.653360	4.785754	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.957447
thyroid_gland_male_adult_54_years	chr15	45010587	45010588	45010587	+	RAMPAGE_only	8	8	8	0.281423	2.750000	chr15	45010299	45010775	LTR|ERV1|LTR12F	+	chr15	45023103	45075089	SORD|NM_003104.5	+	45023103,45040407,45043256,45061066,45065270,45068180,45068876,45072316,45073364	45023349,45040441,45043421,45061226,45065389,45068246,45069052,45072438,45075089	0.750000
thyroid_gland_male_adult_54_years	chr20	35713358	35713424	35713358	-	High_confidence	2	2	16	0.562846	3.375000	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	1.000000
thyroid_gland_male_adult_54_years	chr3	69237169	69237177	69237169	-	RAMPAGE_only	4	4	11	0.386957	3.277613	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69169989	69386073	FRMD4B|ENST00000398540.7	-	69169989,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69195230,69196254,69196899,69198697,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69385827	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195141,69195364,69196396,69197038,69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69386073	0.818182
thyroid_gland_male_adult_54_years	chr4	75127251	75127264	75127261	-	RAMPAGE_only	3	3	9	0.316601	2.641604	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.888889
thyroid_gland_male_adult_54_years	chr16	69996417	69996438	69996417	-	RAMPAGE_only	3	3	8	0.281423	2.750000	chr16	69996297	69996477	SINE|MIR|MIRb	+	chr16	69993019	70021930	PDXDC2P-NPIPB14P|ENST00000525331.5	-	69993019,69996068,69996389,70010750,70011840,70014103,70018046,70021823	69993248,69996226,69996468,70010856,70011929,70014167,70018097,70021930	1.000000
thyroid_gland_male_adult_54_years	chr14	81427421	81427445	81427421	-	High_confidence	5	5	24	0.844269	3.407268	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	1.000000
thyroid_gland_male_adult_54_years	chr4	184768320	184768351	184768348	-	RAMPAGE_only	2	2	11	0.386957	3.121928	chr4	184768056	184768306	SINE|MIR|MIRc	-	chr4	184755600	184766702	ACSL1|ENST00000503407.5	-	184755600,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621	184757265,184757706,184757920,184760500,184762493,184763255,184764925,184765986,184766702	0.636364
thyroid_gland_male_adult_54_years	chr6	158665253	158665264	158665257	+	RAMPAGE_only	6	10	20	0.703557	4.247928	chr6	158665118	158665308	SINE|MIR|MIRb	-	chr6	158663402	158764876	SYTL3|NM_001318745.1	+	158663402,158665394,158682924,158707229,158708321,158713799,158718086,158725502,158745479,158751927,158757210,158760639,158762075,158763303,158764494	158663625,158665613,158682989,158707281,158708391,158713878,158718211,158725637,158745658,158752030,158757381,158760745,158762178,158763509,158764876	0.950000
thyroid_gland_male_adult_54_years	chr2	24328540	24328572	24328540	-	High_confidence	20	20	77	2.708696	4.494964	chr2	24328467	24328762	SINE|Alu|AluSz6	-	chr2	24202866	24328118	ITSN2|ENST00000622089.4	-	24202866,24204244,24205213,24208236,24209099,24209817,24210779,24212649,24216048,24217906,24220944,24246128,24246796,24248628,24248836,24252344,24254366,24257887,24261105,24261560,24270670,24271765,24275712,24286211,24293687,24295663,24298664,24299908,24301153,24301964,24303798,24308616,24310283,24310488,24312211,24313459,24315131,24328051,24328103	24203783,24204418,24205297,24208319,24209221,24210033,24210947,24212748,24216232,24218013,24221066,24246320,24246893,24248750,24248882,24252511,24254431,24258093,24261250,24261742,24270768,24271941,24275849,24286351,24293775,24295804,24298814,24300171,24301239,24302102,24303862,24308756,24310380,24310692,24312375,24313523,24315224,24328100,24328118	0.935065
thyroid_gland_male_adult_54_years	chr19	19958453	19958454	19958453	+	High_confidence	17	17	21	0.738735	3.576618	chr19	19958163	19958689	LTR|ERVL|LTR66	+	chr19	19958462	19964632	STRG.85009.1	+	19958462,19963118	19958554,19964632	0.904762
thyroid_gland_male_adult_54_years	chr4	141333695	141333713	141333695	+	High_confidence	4	6	13	0.457312	2.653544	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141332966	141657522	STRG.26940.7	+	141332966,141580370,141656185	141333774,141580563,141657522	0.846154
thyroid_gland_male_adult_54_years	chr7	1455739	1455740	1455739	-	RAMPAGE_only	7	7	10	0.351779	2.947703	chr7	1455719	1455815	LINE|CR1|L3b	+	chr7	1449336	1449967	STRG.39887.6	-	1449336	1449967	0.700000
thyroid_gland_male_adult_54_years	chr6	35562259	35562273	35562272	+	RAMPAGE_only	6	6	10	0.351779	2.846439	chr6	35561561	35563248	LTR|ERV1|HERVIP10B3-int	-	chr6	35543634	35597141	STRG.35401.2	+	35543634,35544867,35593029	35543758,35544933,35597141	1.000000
thyroid_gland_male_adult_54_years	chr1	53902412	53902431	53902423	-	RAMPAGE_only	7	7	27	0.949802	4.356558	chr1	53901976	53902482	LINE|L2|L2a	+	chr1	53851732	53889834	YIPF1|ENST00000072644.6	-	53851732,53860055,53866199,53866757,53871371,53878314,53878641,53883112,53888906,53889243,53889712	53852270,53860153,53866382,53866924,53871488,53878402,53878722,53883276,53888986,53889463,53889834	0.925926
thyroid_gland_male_adult_54_years	chrX	72305913	72305914	72305913	-	High_confidence	202	230	232	8.161265	5.530541	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144885.1	-	72301637,72302809,72305301,72305824	72302244,72302934,72305422,72305914	0.900862
thyroid_gland_male_adult_54_years	chr8	133091014	133091021	133091020	+	RAMPAGE_only	5	6	14	0.492490	3.467720	chr8	133090916	133091161	SINE|MIR|MIRb	+	chr8	132964606	133134903	TG|ENST00000519543.5	+	132964606,132966559,132967793,132969457,132971793,132972597,133011900,133013599,133017777,133019601,133021990,133029820,133095043,133096205,133113421,133116608,133131811,133133469,133134675	132964933,132966697,132967970,132969569,132971873,132972741,133012035,133013764,133017997,133019695,133022150,133030023,133095208,133096373,133113603,133116716,133131946,133133660,133134903	0.642857
thyroid_gland_male_adult_54_years	chr11	65431712	65431914	65431767	+	RAMPAGE_only	9	11	145	5.100791	6.264897	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.979310
thyroid_gland_male_adult_54_years	chr7	107580498	107580507	107580506	+	High_confidence	7	7	19	0.668379	3.826875	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580454	107619446	BCAP29|ENST00000379117.6	+	107580454,107580758,107583881,107593954,107595866,107600396,107613331,107618327	107580577,107580864,107583982,107594105,107596002,107600505,107613432,107619446	0.842105
thyroid_gland_male_adult_54_years	chr5	50443255	50443263	50443255	-	High_confidence	8	8	27	0.949802	4.083856	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.740741
thyroid_gland_male_adult_54_years	chr9	128921939	128921947	128921940	+	High_confidence	5	8	16	0.562846	3.327820	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.937500
thyroid_gland_male_adult_54_years	chr6	155214208	155214213	155214208	+	RAMPAGE_only	3	4	17	0.598024	3.219528	chr6	155212598	155214287	LTR|ERV1|MER52A	-	chr6	155216636	155257220	TIAM2|ENST00000275246.11	+	155216636,155240529,155244010,155244657,155245622,155247999,155249850,155250912,155251944,155252947,155253972,155254418,155256483	155217090,155240709,155244079,155244783,155245731,155248179,155249969,155251021,155252003,155253053,155254060,155254573,155257220	0.941176
thyroid_gland_male_adult_54_years	chr9	128921399	128921400	128921399	+	High_confidence	8	9	11	0.386957	3.121928	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.727273
thyroid_gland_male_adult_54_years	chr15	65577208	65577343	65577302	+	RAMPAGE_only	29	30	148	5.206324	5.364850	chr15	65577153	65577426	SINE|Alu|AluJr	+	chr15	65530488	65578355	HACD3|NM_016395.2	+	65530488,65551675,65554886,65556738,65558679,65562773,65564214,65570090,65571547,65572234,65576302	65530718,65551718,65554960,65556903,65558731,65562884,65564342,65570203,65571654,65572366,65578355	0.979730
thyroid_gland_male_adult_54_years	chr9	62376790	62376798	62376790	-	High_confidence	4	4	10	0.351779	2.521928	chr9	62376774	62377000	LTR|ERV1|MER90	-	chr9	62374127	62376783	AL590399.1|ENST00000377518.3	-	62374127,62376497	62376382,62376783	0.900000
thyroid_gland_male_adult_54_years	chr6	127330835	127330890	127330889	-	High_confidence	4	5	16	0.562846	3.240224	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.750000
thyroid_gland_male_adult_54_years	chr1	21665301	21665303	21665301	-	RAMPAGE_only	3	5	8	0.281423	2.521641	chr1	21665068	21665273	SINE|MIR|MIRb	-	chr1	21596221	21669300	RAP1GAP|ENST00000611549.4	-	21596221,21597685,21597960,21598399,21599493,21601683,21602803,21606065,21608212,21608849,21609574,21610119,21611451,21611715,21612025,21613175,21613627,21613985,21617305,21617933,21619024,21620014,21626303,21649760,21669253	21597264,21597728,21598095,21598502,21599617,21601797,21603912,21606197,21608350,21608936,21609646,21610275,21611581,21611816,21612109,21613229,21613706,21614089,21617491,21617972,21619072,21620050,21626397,21649796,21669300	0.750000
thyroid_gland_male_adult_54_years	chr11	72111434	72111497	72111455	-	High_confidence	4	5	28	0.984980	4.106377	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72107158	72111443	ANAPC15|ENST00000543050.5	-	72107158,72110087,72110543,72111156,72111411	72107605,72110225,72110603,72111286,72111443	0.571429
thyroid_gland_male_adult_54_years	chr9	20658312	20658349	20658348	+	High_confidence	52	92	272	9.568380	5.726122	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658314	20912908	STRG.50048.6	+	20658314,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912908	0.867647
thyroid_gland_male_adult_54_years	chr10	114698830	114698844	114698843	-	RAMPAGE_only	8	8	14	0.492490	3.392747	chr10	114698749	114699028	LINE|L1|HAL1	+	chr10	114435953	114685003	ABLIM1|ENST00000369256.6	-	114435953,114437843,114439175,114440081,114441016,114441721,114444028,114445311,114447879,114451623,114453378,114465697,114468180,114472976,114473878,114485296,114487957,114491790,114545004,114547649,114571296,114575415,114601826,114684289	114436373,114437924,114439250,114440089,114441077,114441786,114444134,114445403,114448026,114451671,114453483,114465827,114468216,114473132,114473956,114485380,114488016,114491878,114545098,114547776,114571406,114575599,114601961,114685003	0.785714
thyroid_gland_male_adult_54_years	chr2	241099419	241099439	241099419	-	RAMPAGE_only	2	2	8	0.281423	2.500000	chr2	241099079	241099374	SINE|Alu|AluSz	-	chr2	241087093	241102295	MTERF4|ENST00000241527.10	-	241087093,241089979,241094276,241095129,241097242,241099395,241102252	241089365,241090044,241094432,241096438,241097427,241099894,241102295	1.000000
thyroid_gland_male_adult_54_years	chr15	40377647	40377648	40377647	-	RAMPAGE_only	10	10	10	0.351779	3.321928	chr15	40377333	40378317	LINE|L1|L1MEc	+	chr15	40358729	40375930	STRG.74619.10	-	40358729,40371838,40375622	40371017,40372094,40375930	1.000000
thyroid_gland_male_adult_54_years	chr9	124804320	124804342	124804320	+	RAMPAGE_only	3	4	8	0.281423	2.750000	chr9	124804356	124804442	DNA|hAT-Charlie|MER58B	+	chr9	124800873	124814891	OLFML2A|NM_001282715.1	+	124800873,124801413,124804093,124807780,124809807	124801074,124801663,124804342,124807966,124814891	1.000000
thyroid_gland_male_adult_54_years	chr8	133459114	133459206	133459114	-	RAMPAGE_only	9	9	60	2.110672	4.797626	chr8	133458873	133459194	SINE|Alu|AluJo	-	chr8	133454852	133571925	ST3GAL1|ENST00000521180.5	-	133454852,133461874,133463413,133464777,133465893,133475718,133499134,133545773,133571692	133459937,133461994,133463459,133464957,133466090,133476600,133499189,133545926,133571925	0.983333
thyroid_gland_male_adult_54_years	chr2	107529464	107529512	107529489	+	High_confidence	20	26	91	3.201186	5.907474	chr2	107529145	107529729	LTR|ERV1|LTR9	-	chr2	107529486	107532478	STRG.11701.2	+	107529486	107532478	0.890110
thyroid_gland_male_adult_54_years	chr9	92536703	92536718	92536703	-	High_confidence	4	5	10	0.351779	2.947703	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.700000
thyroid_gland_male_adult_54_years	chr9	132319555	132319576	132319563	-	RAMPAGE_only	2	3	9	0.316601	3.000000	chr9	132319064	132319644	LINE|L2|L2a	+	chr9	132261355	132311856	SETX|ENST00000436441.5	-	132261355,132269402,132269614,132271709,132275255,132277059,132278069,132281466,132283263,132286422,132288235,132288549,132295871,132296886,132298079,132300629,132311756	132264985,132269489,132269702,132271808,132275420,132277152,132278257,132281574,132283413,132286494,132288351,132288651,132296028,132297054,132298312,132300803,132311856	0.555556
thyroid_gland_male_adult_54_years	chr21	29077476	29077517	29077486	+	High_confidence	15	15	48	1.688538	5.306171	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.562500
thyroid_gland_male_adult_54_years	chr14	100138810	100138811	100138810	+	RAMPAGE_only	5	5	7	0.246245	2.521641	chr14	100138741	100139027	LINE|L2|L2b	-	chr14	100019381	100140117	EVL|ENST00000544450.6	+	100019381,100084686,100097480,100123538,100126706,100128518,100129562,100132718,100135904,100137577,100137739	100019687,100084855,100097658,100123602,100126771,100128748,100129684,100132779,100135968,100137644,100140117	0.714286
thyroid_gland_male_adult_54_years	chr22	18149858	18149869	18149868	+	High_confidence	57	57	123	4.326878	5.306321	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.959350
thyroid_gland_male_adult_54_years	chr15	24985301	24985501	24985473	+	High_confidence	9	9	123	4.326878	5.136903	chr15	24985385	24985613	SINE|Alu|AluSz6	-	chr15	24985052	24988232	PWAR5|ENST00000624480.1	+	24985052	24988232	0.991870
thyroid_gland_male_adult_54_years	chr19	44914321	44914323	44914321	+	High_confidence	42	50	62	2.181028	4.515061	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.870968
thyroid_gland_male_adult_54_years	chr6	28335904	28335941	28335904	-	High_confidence	5	5	26	0.914625	4.334963	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.884615
thyroid_gland_male_adult_54_years	chr14	81166367	81166383	81166382	-	RAMPAGE_only	5	5	11	0.386957	2.721928	chr14	81166191	81166439	LTR|ERVL-MaLR|MLT1J2	+	chr14	81012098	81170224	AC007262.2|ENST00000646052.1	-	81012098,81053682,81087466,81093581,81094214,81099398,81165192,81170108	81014404,81053816,81087652,81093737,81094324,81099526,81165381,81170224	0.727273
thyroid_gland_male_adult_54_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	33	33	33	1.160870	4.392583	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
thyroid_gland_male_adult_54_years	chr11	74328049	74328130	74328129	+	RAMPAGE_only	17	18	143	5.030435	6.127724	chr11	74327828	74329146	Retroposon|SVA|SVA_B	+	chr11	74329342	74368823	STRG.61058.1	+	74329342,74368064	74329488,74368823	0.671329
thyroid_gland_male_adult_54_years	chr13	93455144	93455185	93455182	+	High_confidence	109	109	499	17.553755	4.911878	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93455119	94407316	STRG.69051.2	+	93455119,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93455438,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407316	0.943888
thyroid_gland_male_adult_54_years	chr8	133113078	133113105	133113104	+	RAMPAGE_only	9	10	22	0.773913	3.535175	chr8	133113104	133113329	SINE|MIR|MIR	-	chr8	133095158	133113668	TG|ENST00000522809.1	+	133095158,133096205,133113421	133095208,133096373,133113668	0.772727
thyroid_gland_male_adult_54_years	chr11	72135724	72135725	72135724	+	High_confidence	5	5	7	0.246245	2.521641	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	1.000000
thyroid_gland_male_adult_54_years	chr1	151769815	151769847	151769815	-	RAMPAGE_only	1	1	8	0.281423	2.521641	chr1	151768666	151770134	Retroposon|SVA|SVA_C	-	chr1	151769210	151790479	STRG.5399.3	-	151769210,151774412,151774709,151775064,151775391,151775819,151776095,151776438,151778684,151779102,151779950,151781480,151782898,151790379	151770562,151774504,151774806,151775166,151775543,151775884,151776268,151776599,151779006,151779242,151780140,151781587,151783049,151790479	0.750000
thyroid_gland_male_adult_54_years	chr6	2990740	2990749	2990748	-	RAMPAGE_only	14	15	39	1.371937	3.881902	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.897436
thyroid_gland_male_adult_54_years	chr19	6469067	6469100	6469079	+	High_confidence	2	2	10	0.351779	2.947703	chr19	6469029	6469330	SINE|Alu|AluSq	-	chr19	6469464	6470152	AC010503.4|ENST00000615487.1	+	6469464	6470152	0.800000
thyroid_gland_male_adult_54_years	chr13	27445105	27445110	27445105	-	RAMPAGE_only	4	4	11	0.386957	3.321928	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.909091
thyroid_gland_male_adult_54_years	chr21	33450484	33450535	33450484	-	RAMPAGE_only	4	5	37	1.301581	4.354443	chr21	33450204	33450495	SINE|Alu|AluSx1	-	chr21	33432484	33479943	TMEM50B|ENST00000420455.5	-	33432484,33439213,33448781,33455726,33460412,33465341,33467009,33468786,33479837	33432802,33439297,33450863,33455784,33460505,33465409,33467122,33468926,33479943	0.945946
thyroid_gland_male_adult_54_years	chr15	40389355	40389360	40389355	+	RAMPAGE_only	2	2	7	0.246245	2.807355	chr15	40389143	40389448	SINE|Alu|AluSp	-	chr15	40383254	40392023	KNSTRN|ENST00000559083.1	+	40383254,40389505,40389835,40391492,40391948	40383322,40389611,40389929,40391554,40392023	0.714286
thyroid_gland_male_adult_54_years	chr14	36160824	36160860	36160841	-	RAMPAGE_only	4	5	11	0.386957	2.846439	chr14	36157673	36162691	LINE|L1|L1PA7	-	chr14	36136107	36176815	STRG.70435.2	-	36136107,36153803,36162623,36176297	36136356,36162247,36162683,36176815	0.909091
thyroid_gland_male_adult_54_years	chr7	130915850	130915885	130915884	+	RAMPAGE_only	8	8	26	0.914625	4.103910	chr7	130915903	130916038	SINE|MIR|MIRc	+	chr7	130853719	130928649	LINC00513|ENST00000447430.1	+	130853719,130862123,130914963,130915899,130927561	130853796,130862202,130915102,130916132,130928649	0.692308
thyroid_gland_male_adult_54_years	chr1	156752112	156752113	156752112	-	High_confidence	8	9	12	0.422134	2.913977	chr1	156752098	156752165	LINE|L2|L2c	-	chr1	156742106	156752232	HDGF|NM_001126051.1	-	156742106,156743651,156744162,156745007,156745296,156752037	156743455,156743878,156744348,156745146,156745373,156752232	0.916667
thyroid_gland_male_adult_54_years	chr10	49077475	49077476	49077475	-	RAMPAGE_only	20	20	21	0.738735	3.303702	chr10	49077426	49078858	LINE|L1|L1MD1	+	chr10	49014244	49115509	VSTM4|ENST00000332853.8	-	49014244,49046982,49048477,49064702,49077218,49085954,49107593,49115430	49019775,49047044,49048584,49064736,49077326,49086023,49107995,49115509	0.809524
thyroid_gland_male_adult_54_years	chr20	37298760	37298761	37298760	+	RAMPAGE_only	9	9	11	0.386957	2.921928	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.909091
thyroid_gland_male_adult_54_years	chr17	39927960	39927992	39927991	-	High_confidence	5	8	20	0.703557	3.681881	chr17	39927855	39928002	SINE|MIR|MIRc	-	chr17	39921040	39927804	ORMDL3|NM_139280.3	-	39921040,39923111,39924029,39927483	39922685,39923263,39924225,39927804	0.550000
thyroid_gland_male_adult_54_years	chr9	72363549	72363574	72363558	-	High_confidence	2	3	10	0.351779	2.947703	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.600000
thyroid_gland_male_adult_54_years	chr1	212234697	212234703	212234697	-	High_confidence	2	2	7	0.246245	2.521641	chr1	212234586	212234675	DNA|hAT-Charlie|Charlie24	-	chr1	212225277	212234736	LOC101929541|NR_125983.1	-	212225277,212230202,212234502	212225513,212230259,212234736	0.857143
thyroid_gland_male_adult_54_years	chr1	189149759	189149763	189149762	+	High_confidence	17	18	26	0.914625	4.103465	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	189149642	189389879	STRG.6417.1	+	189149642,189150541,189307728,189389824	189149876,189150759,189307878,189389879	0.692308
thyroid_gland_male_adult_54_years	chrY	3002742	3002755	3002754	-	High_confidence	6	7	16	0.562846	3.373557	chrY	3002436	3002992	LTR|ERV1|LTR4	+	chrY	2966843	3002626	ZFY-AS1|ENST00000417305.1	-	2966843,2981837,3002312	2966939,2981927,3002626	0.750000
thyroid_gland_male_adult_54_years	chr1	153967486	153967512	153967486	+	High_confidence	30	35	88	3.095652	5.674049	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.750000
thyroid_gland_male_adult_54_years	chr4	55101938	55101955	55101938	-	RAMPAGE_only	3	3	7	0.246245	2.521641	chr4	55101500	55101889	LINE|L1|L1PA10	-	chr4	55078530	55122921	KDR|ENST00000647068.1	-	55078530,55081955,55082535,55087606,55088867,55089373,55089690,55089955,55092616,55094801,55095576,55096228,55097661,55098136,55098696,55101896,55102361,55104642,55105831,55106686,55107736,55110402,55110653,55113303,55114125,55114873,55115280,55118603,55121096,55122841	55080163,55082041,55082635,55087758,55088973,55089473,55089802,55090078,55092714,55094955,55095665,55096342,55097766,55098272,55098803,55102028,55102508,55104984,55105940,55106810,55107893,55110566,55110768,55113481,55114265,55115042,55115411,55118800,55121190,55122921	0.714286
thyroid_gland_male_adult_54_years	chr11	78081872	78081884	78081872	-	RAMPAGE_only	31	36	83	2.919763	5.170191	chr11	78081299	78085065	LTR|ERV1|HERVH-int	+	chr11	78068303	78080219	NDUFC2|ENST00000281031.4	-	78068303,78072997,78079578	78070036,78073141,78080219	0.891566
thyroid_gland_male_adult_54_years	chr22	30973573	30973599	30973598	+	RAMPAGE_only	2	2	6	0.211067	2.584963	chr22	30973598	30973802	SINE|MIR|MIRc	-	chr22	30972262	30976063	TUG1|ENST00000602393.1	+	30972262,30975169	30973601,30976063	1.000000
thyroid_gland_male_adult_54_years	chr2	70987031	70987187	70987068	-	RAMPAGE_only	7	7	61	2.145850	4.388664	chr2	70985936	70987135	LINE|L2|L2b	-	chr2	70985943	70989721	TEX261|ENST00000478068.1	-	70985943,70988914	70988715,70989721	0.983607
thyroid_gland_male_adult_54_years	chr11	65429201	65429549	65429548	+	RAMPAGE_only	13	15	210	7.387352	4.345886	chr11	65429519	65429591	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.995238
thyroid_gland_male_adult_54_years	chr19	51886854	51886862	51886861	-	RAMPAGE_only	5	5	9	0.316601	2.500000	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51878400	51887889	ZNF577|ENST00000638538.1	-	51878400,51880322,51880678,51886115,51886820,51887831	51878515,51880401,51880877,51886145,51886912,51887889	0.555556
thyroid_gland_male_adult_54_years	chr14	50138614	50138653	50138614	-	RAMPAGE_only	2	3	11	0.386957	3.095795	chr14	50138460	50138574	LINE|L1|L1MA1	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	1.000000
thyroid_gland_male_adult_54_years	chr19	18938729	18938746	18938745	-	High_confidence	6	7	11	0.386957	3.121928	chr19	18938564	18938695	SINE|MIR|MIR3	-	chr19	18929438	18938982	HOMER3|ENST00000594439.5	-	18929438,18931324,18931508,18931975,18932923,18938352,18938727,18938968	18929634,18931411,18931625,18932132,18933045,18938484,18938884,18938982	0.545455
thyroid_gland_male_adult_54_years	chr11	18706991	18707033	18707032	-	High_confidence	42	58	209	7.352174	6.277846	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18704303	18707024	STRG.59032.1	-	18704303,18705816,18706913	18704538,18706146,18707024	0.732057
thyroid_gland_male_adult_54_years	chr8	129752884	129752912	129752905	-	High_confidence	20	20	62	2.181028	4.952303	chr8	129752564	129757710	LINE|L1|L1MA2	+	chr8	129748195	129752886	GSDMC|ENST00000522273.5	-	129748195,129749451,129749989,129750430,129751541,129751861,129752105,129752697	129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752886	0.854839
thyroid_gland_male_adult_54_years	chr18	35467167	35467169	35467167	-	High_confidence	4	8	9	0.316601	2.750000	chr18	35467057	35467118	DNA|hAT-Charlie|MER5A	-	chr18	35446907	35467088	AC007998.3|ENST00000586741.1	-	35446907,35447484,35466623	35446955,35447542,35467088	0.777778
thyroid_gland_male_adult_54_years	chr10	122127024	122127025	122127024	+	High_confidence	99	99	111	3.904743	5.659921	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.594595
thyroid_gland_male_adult_54_years	chr2	201168755	201168866	201168755	+	RAMPAGE_only	7	7	53	1.864427	5.054587	chr2	201168284	201170266	LINE|L1|L1P3	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	0.962264
thyroid_gland_male_adult_54_years	chr3	114380866	114380867	114380866	-	RAMPAGE_only	14	14	14	0.492490	2.842371	chr3	114380802	114381001	SINE|MIR|MIR3	+	chr3	114338652	114383641	ZBTB20|ENST00000474710.5	-	114338652,114350273,114380216,114380776,114383615	114339426,114351878,114380404,114380940,114383641	1.000000
thyroid_gland_male_adult_54_years	chr11	62600241	62600250	62600249	-	High_confidence	4	4	9	0.316601	2.500000	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.666667
thyroid_gland_male_adult_54_years	chr2	55267593	55267620	55267619	-	High_confidence	4	6	11	0.386957	3.121928	chr2	55267563	55267721	SINE|MIR|MIRc	+	chr2	55252541	55267604	MTIF2|ENST00000417741.5	-	55252541,55254653,55262315,55263639,55267568	55252653,55254825,55262427,55263865,55267604	0.909091
thyroid_gland_male_adult_54_years	chr9	127642428	127642461	127642437	+	High_confidence	5	5	27	0.949802	4.356558	chr9	127642433	127642559	LINE|CR1|L3	+	chr9	127642342	127663258	STXBP1|ENST00000626333.1	+	127642342,127651602,127653714,127658374,127660029,127661101,127663204	127642563,127651652,127653796,127658451,127660108,127661205,127663258	0.777778
thyroid_gland_male_adult_54_years	chr19	46412753	46412759	46412753	-	High_confidence	2	2	7	0.246245	2.584963	chr19	46412619	46412892	LTR|Gypsy|MamGyp-int	-	chr19	46410378	46413564	CCDC8|ENST00000307522.4	-	46410378	46413564	0.857143
thyroid_gland_male_adult_54_years	chr10	73536338	73536355	73536354	-	RAMPAGE_only	2	2	7	0.246245	2.584963	chr10	73536351	73536426	LINE|L1|L1PBa	+	chr10	73497537	73534770	USP54|ENST00000466048.6	-	73497537,73500654,73504849,73505307,73516374,73520907,73523582,73526646,73529679,73530142,73534599	73499188,73500838,73504990,73505426,73517747,73521027,73523750,73526780,73529911,73530523,73534770	0.857143
thyroid_gland_male_adult_54_years	chr19	48270080	48270081	48270080	+	High_confidence	9	9	9	0.316601	2.947703	chr19	48269716	48270187	LTR|ERV1|LTR7C	+	chr19	48270098	48287608	ZNF114|NM_153608.2	+	48270098,48271244,48271726,48279730,48282370,48285760	48270219,48271449,48271828,48279808,48282497,48287608	0.888889
thyroid_gland_male_adult_54_years	chr2	200889279	200889318	200889279	-	High_confidence	14	15	62	2.181028	5.226464	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889276	PPIL3|ENST00000465823.5	-	200870955,200876918,200881420,200885697,200887612,200888955	200871521,200877037,200881488,200885772,200887685,200889276	0.709677
thyroid_gland_male_adult_54_years	chr5	76938022	76938045	76938042	+	High_confidence	11	11	40	1.407115	4.839776	chr5	76937882	76938123	SINE|Alu|AluSx	+	chr5	76938060	76953326	STRG.29916.5	+	76938060,76952834	76938288,76953326	0.550000
thyroid_gland_male_adult_54_years	chr19	20362471	20362472	20362471	+	High_confidence	24	24	27	0.949802	4.078419	chr19	20362027	20362578	LTR|ERV1|LTR6A	+	chr19	20362557	20372226	STRG.85082.1	+	20362557,20369177	20362794,20372226	1.000000
thyroid_gland_male_adult_54_years	chrY	3002537	3002539	3002537	-	RAMPAGE_only	31	58	80	2.814229	5.525348	chrY	3002436	3002992	LTR|ERV1|LTR4	+	chrY	2965839	2967313	STRG.96118.1	-	2965839	2967313	0.575000
thyroid_gland_male_adult_54_years	chr4	121565022	121565121	121565022	-	High_confidence	45	45	164	5.769170	5.806345	chr4	121564946	121565119	LTR|ERV1|MER34B	-	chr4	121564195	121564621	STRG.26546.1	-	121564195	121564621	0.634146
thyroid_gland_male_adult_54_years	chr2	160648330	160648351	160648343	-	RAMPAGE_only	8	9	20	0.703557	3.932138	chr2	160648118	160650080	LTR|ERV1|MER52D	+	chr2	160274539	160555299	STRG.12862.3	-	160274539,160275629,160277302,160278547,160281313,160284774,160284994,160286968,160300650,160303329,160313155,160318168,160367215,160555236	160274764,160275714,160277383,160278658,160281364,160284868,160285044,160287084,160300730,160303487,160313247,160318227,160367391,160555299	0.550000
thyroid_gland_male_adult_54_years	chr16	67415891	67415940	67415932	+	High_confidence	3	3	12	0.422134	3.251629	chr16	67415897	67416018	LINE|L2|L2b	+	chr16	67415907	67425843	STRG.78427.1	+	67415907,67425378	67416143,67425843	0.916667
thyroid_gland_male_adult_54_years	chr3	97962107	97962108	97962107	-	High_confidence	14	14	18	0.633202	3.616875	chr3	97961949	97962521	LINE|L2|L2c	-	chr3	97954006	97961678	RIOX2|ENST00000507612.1	-	97954006,97959050,97961588	97954495,97959179,97961678	0.611111
thyroid_gland_male_adult_54_years	chr10	72355123	72355169	72355145	-	High_confidence	4	4	20	0.703557	4.037401	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.850000
thyroid_gland_male_adult_54_years	chr14	105072343	105072344	105072343	-	RAMPAGE_only	6	6	8	0.281423	3.000000	chr14	105072181	105072358	LTR|ERV1|MER110A	+	chr14	105049388	105065550	GPR132|NM_001278694.1	-	105049388,105055386,105057166,105057937,105065378	105052102,105056166,105057280,105058027,105065550	0.625000
thyroid_gland_male_adult_54_years	chr14	64087849	64087850	64087849	+	RAMPAGE_only	7	7	7	0.246245	2.807355	chr14	64087899	64088180	SINE|Alu|AluSz	+	chr14	64075614	64226430	SYNE2|ENST00000394768.6	+	64075614,64078465,64080455,64081442,64087418,64087670,64089573,64090865,64093348,64097948,64098746,64101931,64107490,64113340,64119426,64120926,64122011,64122285,64125078,64126326,64126597,64128451,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64165284,64167232,64167494,64168876,64170227,64174943,64177357,64186423,64188549,64190070,64202800,64208757,64209427,64209941,64211960,64212810,64214193,64216247,64218397,64219207,64220436,64221575,64223188,64224460,64224995,64225318	64076100,64078606,64080638,64081580,64087487,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64122427,64125210,64126479,64126807,64128553,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64165410,64167387,64167639,64168971,64170462,64175138,64177483,64186579,64188708,64190237,64202963,64208945,64209578,64210124,64212098,64213005,64214470,64216387,64218512,64219410,64220637,64221704,64223380,64224547,64225045,64226430	1.000000
thyroid_gland_male_adult_54_years	chr11	72758533	72758601	72758550	-	High_confidence	5	5	40	1.407115	3.618897	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72759309	STARD10|ENST00000537351.5	-	72754728,72755121,72755700,72757766,72758529,72759233	72754782,72755142,72755753,72757884,72758633,72759309	0.650000
thyroid_gland_male_adult_54_years	chrX	53546446	53546454	53546453	-	RAMPAGE_only	3	3	7	0.246245	2.584963	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.714286
thyroid_gland_male_adult_54_years	chr9	62897365	62897431	62897430	+	High_confidence	10	10	29	1.020158	4.137538	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.689655
thyroid_gland_male_adult_54_years	chr1	150457334	150457350	150457334	+	RAMPAGE_only	2	2	7	0.246245	2.584963	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150364710	150473556	RPRD2|ENST00000369068.4	+	150364710,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150364919,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	0.714286
thyroid_gland_male_adult_54_years	chr2	37147696	37147757	37147696	-	High_confidence	2	2	12	0.422134	3.251629	chr2	37147318	37147662	LINE|L1|L1PA4	-	chr2	37107272	37147806	EIF2AK2|ENST00000405334.5	-	37107272,37107473,37109193,37114730,37119958,37122505,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687	37107395,37107527,37109295,37114859,37120139,37122664,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147806	1.000000
thyroid_gland_male_adult_54_years	chr17	47067498	47067534	47067498	-	High_confidence	521	560	2313	81.366404	6.134443	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.929529
thyroid_gland_male_adult_54_years	chr11	108923686	108923724	108923712	+	RAMPAGE_only	6	6	39	1.371937	4.063203	chr11	108923524	108923886	LINE|L2|L2c	-	chr11	108929518	108940925	DDX10|ENST00000534221.1	+	108929518,108940245	108929708,108940925	0.923077
thyroid_gland_male_adult_54_years	chr2	182030747	182030784	182030773	+	High_confidence	12	12	44	1.547826	4.152978	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.840909
thyroid_gland_male_adult_54_years	chr10	73536415	73536434	73536415	-	RAMPAGE_only	2	3	6	0.211067	2.584963	chr10	73536351	73536426	LINE|L1|L1PBa	+	chr10	73497537	73534770	USP54|ENST00000466048.6	-	73497537,73500654,73504849,73505307,73516374,73520907,73523582,73526646,73529679,73530142,73534599	73499188,73500838,73504990,73505426,73517747,73521027,73523750,73526780,73529911,73530523,73534770	1.000000
thyroid_gland_male_adult_54_years	chr1	52911575	52911608	52911575	-	RAMPAGE_only	2	2	9	0.316601	2.750000	chr1	52911549	52911601	LINE|RTE-BovB|MamRTE1	+	chr1	52899173	52912830	ECHDC2|ENST00000487866.5	-	52899173,52904645,52905033,52906518,52907867,52911565,52911722,52912753	52899224,52904833,52905090,52906611,52907954,52911653,52912021,52912830	0.555556
thyroid_gland_male_adult_54_years	chr1	196404216	196404229	196404228	-	High_confidence	9	9	20	0.703557	3.521928	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196324657	196404247	STRG.6548.3	-	196324657,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404247	0.800000
thyroid_gland_male_adult_54_years	chr10	84327572	84327591	84327572	+	High_confidence	3	5	14	0.492490	3.378783	chr10	84327502	84327573	LINE|RTE-X|L4_A_Mam	-	chr10	84328557	84518492	CCSER2|ENST00000372088.7	+	84328557,84371013,84373618,84417770,84425730,84438511,84463932,84470371,84477574,84513448	84328808,84372469,84373815,84417861,84425893,84438707,84464016,84470458,84477664,84518492	1.000000
thyroid_gland_male_adult_54_years	chr1	56542762	56542771	56542762	-	RAMPAGE_only	3	3	10	0.351779	2.947703	chr1	56542747	56543033	SINE|Alu|AluJb	+	chr1	56494746	56579568	PLPP3|ENST00000371250.3	-	56494746,56511975,56523822,56524276,56536954,56578877	56496676,56512152,56523880,56524554,56537112,56579568	0.700000
thyroid_gland_male_adult_54_years	chr22	24011756	24011757	24011756	+	High_confidence	10	10	11	0.386957	3.321928	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	0.909091
thyroid_gland_male_adult_54_years	chr6	79631273	79631329	79631302	+	High_confidence	575	576	1764	62.053756	6.883846	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.976190
thyroid_gland_male_adult_54_years	chr7	153983411	153983488	153983487	+	RAMPAGE_only	5	5	24	0.844269	4.053509	chr7	153977557	153984005	LINE|L1|L1PA7	-	chr7	153887096	153989985	STRG.45590.12	+	153887096,153959310	153959281,153989985	0.958333
thyroid_gland_male_adult_54_years	chr5	76938197	76938256	76938248	+	RAMPAGE_only	6	8	32	1.125692	4.812500	chr5	76938125	76938555	LTR|ERV1|MER39B	-	chr5	76952712	76969474	CRHBP|ENST00000274368.8	+	76952712,76953600,76954028,76955652,76958740,76963342,76968727	76953215,76953694,76954186,76955863,76958889,76963460,76969474	0.625000
thyroid_gland_male_adult_54_years	chr11	10020293	10020309	10020293	-	RAMPAGE_only	3	3	12	0.422134	2.855389	chr11	10019979	10020694	LTR|ERV1|MER50	+	chr11	9993011	10021966	STRG.58748.6	-	9993011,9993920,9998265,10000913,10002556,10020162	9993103,9993998,9998379,10001022,10002689,10021966	0.916667
thyroid_gland_male_adult_54_years	chr9	39810033	39810099	39810033	-	High_confidence	52	52	207	7.281818	6.065684	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	STRG.50686.4	-	39807694	39810013	0.642512
thyroid_gland_male_adult_54_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	16	16	16	0.562846	3.625000	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
thyroid_gland_male_adult_54_years	chr2	28956529	28956559	28956536	+	High_confidence	2	2	10	0.351779	2.641604	chr2	28956428	28956586	DNA|hAT-Charlie|MER5A	-	chr2	28956565	29003677	STRG.9372.1	+	28956565,28994724,28998142,28999180,29002535,29003491	28956697,28994862,28998253,28999468,29002747,29003677	0.900000
thyroid_gland_male_adult_54_years	chr14	81192622	81192670	81192622	-	RAMPAGE_only	5	7	28	0.984980	4.315824	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.928571
thyroid_gland_male_adult_54_years	chr7	158863386	158863410	158863400	+	RAMPAGE_only	8	10	24	0.844269	4.229871	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.750000
thyroid_gland_male_adult_54_years	chr5	34244780	34244816	34244811	-	High_confidence	6	6	25	0.879447	4.053509	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34164697	34244831	STRG.28798.6	-	34164697,34175821,34179012,34182679,34218294,34244615	34175537,34175957,34179097,34182867,34218450,34244831	0.800000
thyroid_gland_male_adult_54_years	chr12	114701194	114701213	114701212	-	High_confidence	3	4	9	0.316601	3.000000	chr12	114701162	114701316	SINE|MIR|MIRb	+	chr12	114699934	114701110	STRG.67087.6	-	114699934	114701110	0.666667
thyroid_gland_male_adult_54_years	chr15	57516527	57516551	57516527	+	RAMPAGE_only	4	4	12	0.422134	3.095795	chr15	57516424	57516656	DNA|hAT-Charlie|MER58A	-	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.916667
thyroid_gland_male_adult_54_years	chr13	46121235	46121238	46121235	-	RAMPAGE_only	6	6	16	0.562846	3.323231	chr13	46121221	46121392	DNA|hAT-Charlie|MER5B	+	chr13	46053186	46105076	CPB2|NM_001872.4	-	46053186,46055761,46058178,46064647,46067306,46073872,46078799,46082440,46084218,46087744,46104935	46053798,46055849,46058381,46064741,46067417,46073977,46078901,46082549,46084343,46087820,46105076	0.625000
thyroid_gland_male_adult_54_years	chr1	240406397	240406408	240406407	+	RAMPAGE_only	5	5	10	0.351779	2.725481	chr1	240406423	240406583	SINE|MIR|MIR	+	chr1	240457481	240474267	FMN2|ENST00000543681.1	+	240457481,240471653,240474127	240459443,240472453,240474267	0.500000
thyroid_gland_male_adult_54_years	chr5	175960325	175960353	175960325	-	High_confidence	4	4	13	0.457312	3.022055	chr5	175960190	175960347	SINE|MIR|MIR	-	chr5	175917872	175961324	THOC3|ENST00000432305.6	-	175917872,175961050,175961272	175918172,175961151,175961324	0.615385
thyroid_gland_male_adult_54_years	chr10	5018014	5018020	5018014	-	High_confidence	6	6	12	0.422134	3.084963	chr10	5017765	5018153	LTR|ERVL-MaLR|MSTA	-	chr10	5006461	5017934	AKR1C2|ENST00000604711.1	-	5006461,5007406,5010343,5017899	5006592,5007506,5010653,5017934	0.666667
thyroid_gland_male_adult_54_years	chr7	6590251	6590312	6590251	+	High_confidence	4	4	19	0.668379	3.932138	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.526316
thyroid_gland_male_adult_54_years	chr13	52817715	52817773	52817741	+	High_confidence	9	10	73	2.567984	5.285179	chr13	52817495	52818852	Retroposon|SVA|SVA_B	+	chr13	52817775	52818855	STRG.68425.1	+	52817775	52818855	0.643836
thyroid_gland_male_adult_54_years	chr20	3282639	3282658	3282639	-	RAMPAGE_only	4	4	10	0.351779	2.503258	chr20	3282354	3283011	LINE|L2|L2a	+	chr20	3249304	3407625	C20orf194|ENST00000252032.9	-	3249304,3253725,3255218,3256005,3259479,3259921,3264437,3270426,3278911,3281640,3287631,3290128,3294138,3294527,3296860,3298028,3304439,3315032,3315734,3316722,3318288,3322216,3322651,3324891,3326196,3330645,3332279,3340503,3343675,3348524,3359515,3374047,3375029,3376177,3381378,3382426,3407474	3252684,3253819,3255284,3256211,3259554,3260028,3264524,3270562,3278949,3281766,3287790,3290217,3294256,3294629,3296949,3298175,3304543,3315120,3315785,3316793,3318400,3322262,3322696,3324968,3326284,3330682,3332361,3340639,3343731,3348623,3359593,3374154,3375126,3376302,3381498,3382506,3407625	0.700000
thyroid_gland_male_adult_54_years	chr16	67571179	67571194	67571188	+	High_confidence	2	2	8	0.281423	2.500000	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	1.000000
thyroid_gland_male_adult_54_years	chr7	80369531	80369575	80369531	+	High_confidence	39	39	149	5.241502	6.227978	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.704698
thyroid_gland_male_adult_54_years	chr11	72124658	72124668	72124658	+	RAMPAGE_only	3	3	7	0.246245	2.584963	chr11	72124073	72125099	LTR|ERV1|LTR28	-	chr11	72114868	72139628	FOLR3|ENST00000622388.4	+	72114868,72115034,72135946,72138960,72139346,72139586	72114925,72115185,72136120,72139149,72139482,72139628	0.714286
thyroid_gland_male_adult_54_years	chr11	61249407	61249454	61249407	+	High_confidence	10	11	63	2.216206	4.789054	chr11	61249400	61249513	LINE|L2|L2a	+	chr11	61249332	61251418	PGA5|ENST00000541528.1	+	61249332,61249915,61251131	61249813,61250014,61251418	0.634921
thyroid_gland_male_adult_54_years	chr1	119150579	119150590	119150579	+	RAMPAGE_only	3	3	7	0.246245	2.584963	chr1	119150457	119150757	LTR|ERVL-MaLR|MLT1D	+	chr1	119140405	119152155	STRG.4873.3	+	119140405,119146952,119150564	119140793,119147069,119152155	0.714286
thyroid_gland_male_adult_54_years	chr17	4143199	4143215	4143199	+	High_confidence	244	252	553	19.453360	5.959926	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.969259
thyroid_gland_male_adult_54_years	chr9	135443961	135443970	135443966	-	High_confidence	5	5	18	0.633202	3.725481	chr9	135440176	135444140	LTR|ERV1|HERVE-int	-	chr9	135428801	135444309	STRG.53762.3	-	135428801	135444309	0.777778
thyroid_gland_male_adult_54_years	chr5	34244698	34244699	34244698	-	High_confidence	17	17	19	0.668379	3.787144	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34164697	34244831	STRG.28798.6	-	34164697,34175821,34179012,34182679,34218294,34244615	34175537,34175957,34179097,34182867,34218450,34244831	0.894737
thyroid_gland_male_adult_54_years	chr18	49591289	49591850	49591849	+	RAMPAGE_only	63	68	1082	38.062451	6.164835	chr18	49591725	49591922	SINE|MIR|MIRc	-	chr18	49589358	49592906	LIPG|ENST00000623277.1	+	49589358	49592906	1.000000
thyroid_gland_male_adult_54_years	chr19	2983871	2983904	2983882	+	High_confidence	14	14	42	1.477470	4.650383	chr19	2983200	2983942	LINE|L2|L2a	-	chr19	2983905	2987187	TLE6|ENST00000591953.5	+	2983905,2986828,2986982	2984219,2986891,2987187	0.833333
thyroid_gland_male_adult_54_years	chr5	77139273	77139279	77139278	+	High_confidence	4	4	9	0.316601	3.169925	chr5	77139300	77139468	LTR|ERVL-MaLR|MLT1H	+	chr5	77139248	77148523	ZBED3-AS1|ENST00000515356.2	+	77139248,77146116,77147651	77139317,77147162,77148523	0.555556
thyroid_gland_male_adult_54_years	chr22	19456897	19456909	19456908	-	RAMPAGE_only	3	3	8	0.281423	2.807355	chr22	19456874	19456946	LINE|CR1|L3	+	chr22	19450624	19467716	UFD1|ENST00000466373.1	-	19450624,19451877,19454801,19455679,19456586,19456852,19458070,19465201	19450744,19452000,19454830,19455768,19456634,19456918,19458139,19467716	0.500000
thyroid_gland_male_adult_54_years	chr11	47486749	47486791	47486749	-	High_confidence	3	3	10	0.351779	3.121928	chr11	47486415	47486707	SINE|Alu|AluSz6	-	chr11	47477295	47486799	CELF1|ENST00000422993.2	-	47477295,47478876,47482694,47484388,47486749	47477425,47478952,47482856,47484523,47486799	0.600000
thyroid_gland_male_adult_54_years	chr12	97496504	97496511	97496510	+	RAMPAGE_only	8	8	16	0.562846	2.923231	chr12	97496189	97496510	DNA|TcMar-Tigger|Tigger19a	+	chr12	97464817	97598415	RMST|ENST00000639121.1	+	97464817,97465667,97483430,97492460,97493176,97493874,97494694,97495930,97530654,97560536,97560796,97590975,97593966,97598205	97465071,97465727,97483488,97492606,97493285,97494002,97494881,97496056,97530859,97560698,97561047,97591090,97594054,97598415	0.500000
thyroid_gland_male_adult_54_years	chr22	49657355	49657356	49657355	-	High_confidence	5	5	8	0.281423	2.807355	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49656061	49657429	STRG.91502.1	-	49656061	49657429	0.625000
thyroid_gland_male_adult_54_years	chr6	111387800	111387801	111387800	-	RAMPAGE_only	6	6	8	0.281423	2.500000	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.750000
thyroid_gland_male_adult_54_years	chr14	36146820	36146841	36146820	-	RAMPAGE_only	2	2	7	0.246245	2.521641	chr14	36142656	36148690	LINE|L1|L1PA3	-	chr14	36136107	36176815	STRG.70435.3	-	36136107,36162623,36176297	36153896,36162683,36176815	1.000000
thyroid_gland_male_adult_54_years	chr7	130915921	130915922	130915921	+	RAMPAGE_only	6	8	8	0.281423	2.750000	chr7	130915903	130916038	SINE|MIR|MIRc	+	chr7	130936463	130939661	AC058791.1|ENST00000608412.1	+	130936463	130939661	0.500000
thyroid_gland_male_adult_54_years	chr2	127082979	127082987	127082986	-	High_confidence	3	4	7	0.246245	2.584963	chr2	127082958	127083081	LINE|L1|L1MC4	-	chr2	127048022	127082065	BIN1|NM_001320634.1	-	127048022,127050420,127050801,127059010,127062114,127063570,127063932,127068923,127069994,127070552,127070761,127076625,127081831	127048633,127050522,127050912,127059155,127062197,127063646,127064018,127069031,127070090,127070647,127070816,127076706,127082065	0.857143
thyroid_gland_male_adult_54_years	chr1	112762648	112762696	112762648	+	High_confidence	5	5	38	1.336759	4.553652	chr1	112762625	112762805	SINE|MIR|MIRb	+	chr1	112762664	112797880	STRG.4667.1	+	112762664,112797591	112762746,112797880	0.657895
thyroid_gland_male_adult_54_years	chr1	31373705	31373711	31373705	-	High_confidence	3	3	9	0.316601	2.725481	chr1	31373523	31373667	SINE|MIR|MIRb	-	chr1	31365252	31373288	FABP3|NM_001320996.1	-	31365252,31367392,31369384,31372941	31365939,31367494,31369590,31373288	0.555556
thyroid_gland_male_adult_54_years	chr20	63619801	63619820	63619813	-	High_confidence	4	4	12	0.422134	3.095795	chr20	63619610	63619939	LINE|L1|L1MD2	+	chr20	63587601	63619876	GMEB2|ENST00000266068.5	-	63587601,63592021,63592532,63593010,63595609,63597756,63602964,63604742,63619266	63590729,63592144,63592670,63593082,63595767,63597860,63603092,63604840,63619876	0.916667
thyroid_gland_male_adult_54_years	chr12	91179462	91179549	91179462	-	High_confidence	774	931	3967	139.550594	7.550231	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.906478
thyroid_gland_male_adult_54_years	chr7	44619050	44619051	44619050	+	RAMPAGE_only	31	31	40	1.407115	4.470673	chr7	44618793	44619481	LTR|ERVL|MER21A	+	chr7	44606638	44709066	OGDH|ENST00000222673.5	+	44606638,44624316,44645326,44647656,44666735,44673786,44674410,44675177,44675969,44681719,44693824,44694423,44696024,44696428,44696913,44697369,44697603,44698191,44700140,44701542,44707224,44707581,44707878	44606653,44624565,44645518,44647759,44666851,44673941,44674557,44675268,44676149,44681848,44694004,44694576,44696127,44696557,44697064,44697497,44697782,44698263,44700269,44701615,44707388,44707736,44709066	0.675000
thyroid_gland_male_adult_54_years	chr6	35543643	35543658	35543648	+	High_confidence	165	281	598	21.036364	7.160824	chr6	35543503	35543668	DNA|hAT-Charlie|MER5B	+	chr6	35543634	35597141	STRG.35401.2	+	35543634,35544867,35593029	35543758,35544933,35597141	0.598662
thyroid_gland_male_adult_54_years	chr11	65439400	65439411	65439400	+	RAMPAGE_only	5	5	11	0.386957	3.121928	chr11	65439400	65439684	SINE|Alu|AluSz6	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.909091
thyroid_gland_male_adult_54_years	chr20	3795750	3795783	3795750	+	High_confidence	18	18	101	3.552964	5.788425	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
thyroid_gland_male_adult_54_years	chrX	103607563	103607580	103607579	+	High_confidence	4	4	8	0.281423	2.521641	chrX	103607556	103607707	SINE|MIR|MIRb	+	chrX	103607450	103609927	TCEAL3|ENST00000372628.5	+	103607450,103608603,103609042	103607716,103608673,103609927	0.875000
thyroid_gland_male_adult_54_years	chr4	177445009	177445033	177445009	+	High_confidence	25	25	49	1.723715	4.809492	chr4	177444910	177445732	LTR|ERV1|LTR1A2	+	chr4	177444774	177446259	STRG.27875.1	+	177444774	177446259	0.673469
thyroid_gland_male_adult_54_years	chr19	38037379	38037394	38037382	+	RAMPAGE_only	3	3	9	0.316601	2.500000	chr19	38037052	38037495	LINE|L2|L2b	-	chr19	37932345	38119493	STRG.85802.2	+	37932345,38029088,38081255,38088720,38099961,38101051,38106536,38110226,38119305	37932692,38029156,38083099,38088851,38100150,38101226,38106640,38110384,38119493	0.888889
thyroid_gland_male_adult_54_years	chr7	101217578	101217599	101217598	-	High_confidence	8	8	37	1.301581	4.815623	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.972973
thyroid_gland_male_adult_54_years	chr3	49181606	49181628	49181617	+	RAMPAGE_only	6	6	18	0.633202	3.969816	chr3	49181626	49181796	LINE|L1|L1MD1	+	chr3	49198427	49257723	CCDC36|ENST00000296449.9	+	49198427,49198541,49198889,49211765,49236547,49241225,49244403,49244645,49255389,49256133	49198460,49198662,49199107,49211836,49236722,49241389,49244452,49244733,49255493,49257723	0.500000
thyroid_gland_male_adult_54_years	chr11	26567080	26567092	26567080	-	High_confidence	8	8	19	0.668379	3.725481	chr11	26566991	26567187	SINE|MIR|MIRc	-	chr11	26559032	26567094	MUC15|ENST00000436318.6	-	26559032,26563115,26565164,26567051	26561225,26563265,26565896,26567094	0.947368
thyroid_gland_male_adult_54_years	chr3	164450674	164450677	164450674	+	High_confidence	4	4	11	0.386957	3.277613	chr3	164449656	164452200	LINE|L1|L1PA15	-	chr3	164451263	164622910	STRG.21896.1	+	164451263,164608991,164619324	164451535,164609068,164622910	0.545455
thyroid_gland_male_adult_54_years	chr2	187529467	187529495	187529467	-	RAMPAGE_only	2	2	12	0.422134	2.918296	chr2	187529293	187529670	LTR|ERVL-MaLR|MLT1B	-	chr2	187496883	187554492	TFPI|ENST00000453013.5	-	187496883,187503647,187529363,187554199	187497078,187503770,187529485,187554492	0.583333
thyroid_gland_male_adult_54_years	chr9	121313981	121314021	121314002	+	RAMPAGE_only	76	81	401	14.106324	5.563669	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
thyroid_gland_male_adult_54_years	chr12	7502517	7502529	7502517	-	High_confidence	2	2	8	0.281423	2.807355	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.875000
thyroid_gland_male_adult_54_years	chr21	45563003	45563027	45563026	-	RAMPAGE_only	22	22	47	1.653360	4.913977	chr21	45562422	45564060	LINE|L1|L1MC3	+	chr21	45498200	45544411	SLC19A1|ENST00000567670.5	-	45498200,45525816,45530769,45531388,45537770,45544136	45498612,45525958,45530971,45532148,45538008,45544411	0.553191
thyroid_gland_male_adult_54_years	chr3	48924754	48924765	48924764	+	High_confidence	3	3	7	0.246245	2.584963	chr3	48924715	48924993	SINE|Alu|AluSc8	-	chr3	48924715	48945181	ARIH2|ENST00000463204.5	+	48924715,48927461,48945135	48924839,48927813,48945181	0.857143
thyroid_gland_male_adult_54_years	chr2	32481435	32481438	32481435	+	RAMPAGE_only	3	3	7	0.246245	2.584963	chr2	32481484	32481786	SINE|Alu|AluYj4	+	chr2	32436074	32611581	STRG.9506.7	+	32436074,32439507,32441328,32442064,32442323,32443490,32445520,32448794,32453807,32463193,32464508,32465064,32467524,32467902,32468436,32469394,32470167,32471013,32473111,32476212,32477367,32478634,32479461,32481319,32482428,32485642,32487646,32488587,32490040,32491424,32493539,32499546,32501712,32502794,32503041,32505004,32507979,32509737,32510525,32512932,32514989,32518253,32518816,32524887,32525463,32529650,32531354,32543240,32545642,32547849,32549312,32575155,32593914,32595033,32597750,32599738,32603005,32607454,32611447	32436184,32439686,32441462,32442226,32442455,32443588,32445668,32448928,32453942,32463381,32464823,32465164,32467739,32468111,32468783,32469614,32470301,32471151,32473239,32476344,32477583,32478818,32479617,32481453,32482582,32485759,32487801,32488714,32490151,32491558,32493667,32500109,32501888,32502891,32503236,32505205,32508259,32509994,32510634,32513154,32515770,32518397,32518946,32525019,32525628,32529824,32531551,32543541,32545860,32548014,32549481,32575366,32594060,32595144,32597968,32599900,32603083,32607643,32611581	0.714286
thyroid_gland_male_adult_54_years	chr11	123060168	123060256	123060168	-	High_confidence	56	58	379	13.332411	5.577386	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.678100
thyroid_gland_male_adult_54_years	chr14	102235451	102235481	102235458	-	High_confidence	9	9	30	1.055336	3.939572	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.900000
thyroid_gland_male_adult_54_years	chr12	53464774	53464834	53464774	+	RAMPAGE_only	3	3	24	0.844269	4.136842	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479614	STRG.65200.14	+	53462513,53465931,53467220,53468776,53471297,53471637,53479405	53462567,53465973,53467293,53468832,53471348,53471807,53479614	0.958333
thyroid_gland_male_adult_54_years	chr1	12409848	12409855	12409854	+	RAMPAGE_only	9	9	22	0.773913	3.880180	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.727273
thyroid_gland_male_adult_54_years	chrX	16712958	16712959	16712958	-	High_confidence	6	6	6	0.211067	2.584963	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16587998	16712979	CTPS2|NM_019857.4	-	16587998,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712979	1.000000
thyroid_gland_male_adult_54_years	chr22	49925501	49925553	49925501	+	RAMPAGE_only	4	4	23	0.809091	3.234367	chr22	49925493	49925572	LINE|CR1|L3b	+	chr22	49923209	49927528	CRELD2|ENST00000487969.1	+	49923209,49927254	49925557,49927528	0.826087
thyroid_gland_male_adult_54_years	chr6	3083250	3083298	3083280	+	RAMPAGE_only	5	6	19	0.668379	3.503258	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.947368
thyroid_gland_male_adult_54_years	chr17	28605041	28605090	28605089	-	RAMPAGE_only	8	8	45	1.583004	4.766968	chr17	28603476	28605306	Retroposon|SVA|SVA_D	-	chr17	28455751	28614183	AC005726.1|ENST00000481916.6	-	28455751,28604050,28611767,28612043,28613077,28613261,28613439,28614086	28456109,28605215,28611795,28612084,28613146,28613345,28613688,28614183	0.911111
thyroid_gland_male_adult_54_years	chr4	98891320	98891330	98891329	-	High_confidence	6	7	16	0.562846	3.327820	chr4	98891322	98891802	LINE|L1|L1MB2	+	chr4	98881009	98890898	EIF4E|ENST00000505194.5	-	98881009,98884921,98887078,98887888,98890786	98881142,98885061,98887192,98887952,98890898	1.000000
thyroid_gland_male_adult_54_years	chr7	24481344	24481367	24481344	-	High_confidence	5	6	12	0.422134	3.188722	chr7	24481128	24481493	LINE|L2|L2c	+	chr7	24467745	24480658	STRG.40515.1	-	24467745,24480463	24471589,24480658	0.916667
thyroid_gland_male_adult_54_years	chr8	143039246	143039267	143039266	+	High_confidence	14	16	42	1.477470	4.269770	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.666667
thyroid_gland_male_adult_54_years	chr12	118139096	118139097	118139096	+	High_confidence	13	13	13	0.457312	3.546594	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	0.923077
thyroid_gland_male_adult_54_years	chr8	39902379	39902416	39902409	+	High_confidence	26	26	72	2.532806	5.694027	chr8	39902359	39903639	LTR|ERV1|LTR49-int	+	chr8	39902374	39928426	IDO1|ENST00000522495.5	+	39902374,39913000,39913888,39917874,39918087,39918814,39920099,39922551,39923468,39924720,39925222,39927829	39902448,39913148,39914009,39917970,39918207,39918933,39920114,39922651,39923586,39924772,39925371,39928426	0.791667
thyroid_gland_male_adult_54_years	chr20	45833293	45833320	45833293	-	High_confidence	6	8	19	0.668379	3.191612	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.947368
thyroid_gland_male_adult_54_years	chr11	108224074	108224075	108224074	+	High_confidence	6	6	6	0.211067	2.584963	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.833333
thyroid_gland_male_adult_54_years	chr10	53030022	53030102	53030023	-	High_confidence	158	305	771	27.122135	6.870915	chr10	53029943	53030661	LTR|ERV1|LTR30	-	chr10	53025258	53030097	STRG.55140.2	-	53025258,53029891	53026127,53030097	0.582361
thyroid_gland_male_adult_54_years	chr7	134527596	134527597	134527596	+	High_confidence	48	49	51	1.794071	5.027875	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.921569
thyroid_gland_male_adult_54_years	chr18	9588147	9588184	9588172	-	RAMPAGE_only	2	3	12	0.422134	3.277613	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9547712	9614505	PPP4R1|ENST00000285124.12	-	9547712,9549196,9550051,9550277,9553321,9557220,9559418,9561979,9562921,9563377,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9595017,9614225,9614477	9547952,9549338,9550186,9550398,9553422,9557382,9559604,9562075,9563046,9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9595102,9614270,9614505	0.833333
thyroid_gland_male_adult_54_years	chr5	77255737	77255771	77255770	+	RAMPAGE_only	4	4	8	0.281423	2.500000	chr5	77255333	77255935	DNA|hAT-Tip100|MER45C	+	chr5	77246071	77309167	STRG.29988.12	+	77246071,77268875	77268766,77309167	0.875000
thyroid_gland_male_adult_54_years	chr18	49564823	49564851	49564823	+	RAMPAGE_only	4	4	13	0.457312	3.251629	chr18	49564634	49564999	DNA|TcMar-Tigger|MER46C	+	chr18	49562344	49567763	LIPG|ENST00000579750.1	+	49562344,49565316,49567441	49562405,49565498,49567763	0.538462
thyroid_gland_male_adult_54_years	chr11	8776425	8776437	8776425	-	High_confidence	5	5	13	0.457312	3.418296	chr11	8776369	8776474	LINE|L2|L2b	-	chr11	8730980	8776679	ST5|ENST00000533016.1	-	8730980,8750620,8776191	8731209,8750725,8776679	0.615385
thyroid_gland_male_adult_54_years	chr10	34973954	34973991	34973977	+	High_confidence	26	26	128	4.502767	5.724086	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34973983	34975576	AL392046.2|ENST00000635301.1	+	34973983,34974193,34974657	34974088,34974282,34975576	0.554688
thyroid_gland_male_adult_54_years	chr10	91414624	91414627	91414626	+	RAMPAGE_only	4	6	8	0.281423	2.521641	chr10	91414422	91414860	LINE|L2|L2c	-	chr10	91410344	91514761	HECTD2|ENST00000298068.9	+	91410344,91425280,91460426,91461253,91462094,91478200,91481093,91482966,91484506,91485179,91487681,91491199,91492351,91493419,91496213,91498107,91498871,91499043,91500501,91501190,91512263	91410576,91425410,91460565,91461356,91462184,91478265,91481139,91483076,91484655,91485303,91487778,91491307,91492484,91493508,91496372,91498182,91498959,91499150,91500617,91501334,91514761	0.875000
thyroid_gland_male_adult_54_years	chr22	23527443	23527507	23527506	+	RAMPAGE_only	9	9	43	1.512648	4.528873	chr22	23527401	23527785	LINE|L2|L2b	-	chr22	23536880	23539480	PCAT14|ENST00000629869.1	+	23536880,23538760	23537136,23539480	0.813953
thyroid_gland_male_adult_54_years	chr3	189121298	189121345	189121298	+	RAMPAGE_only	3	3	15	0.527668	3.664498	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.533333
thyroid_gland_male_adult_54_years	chr16	20676161	20676162	20676161	-	High_confidence	10	10	13	0.457312	3.584963	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.846154
thyroid_gland_male_adult_54_years	chr3	194486571	194486613	194486571	-	High_confidence	4	5	27	0.949802	4.032303	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194403464	194486659	STRG.22658.1	-	194403464,194412198,194413758,194419878,194425341,194427074,194428844,194429677,194430071,194430272,194430942,194431103,194431716,194433771,194437094,194437310,194437555,194438855,194441310,194444724,194446926,194447851,194448456,194450144,194453705,194454257,194455892,194457093,194459470,194459788,194460657,194462139,194485793,194486565	194406116,194412288,194413839,194419967,194425529,194427252,194428917,194429774,194430181,194430315,194431022,194431226,194431892,194433896,194437215,194437464,194437573,194438972,194441461,194444786,194447115,194448009,194448636,194450276,194453778,194454392,194455962,194457174,194459541,194459971,194460831,194462236,194485835,194486659	1.000000
thyroid_gland_male_adult_54_years	chr1	183355223	183355285	183355262	-	High_confidence	201	240	1024	36.022135	5.249858	chr1	183355138	183355282	LINE|L2|L2c	+	chr1	183248236	183355328	STRG.6328.2	-	183248236,183261001,183261201,183278552,183283994,183284709,183286661,183290127,183292789,183293704,183355166	183252743,183261069,183261303,183278629,183284039,183284790,183286788,183290206,183292857,183293793,183355328	0.904297
thyroid_gland_male_adult_54_years	chr7	143853174	143853175	143853174	-	RAMPAGE_only	4	4	6	0.211067	2.584963	chr7	143853075	143853314	SINE|Alu|AluJr	-	chr7	143851367	143885373	TCAF1|NM_001206941.1	-	143851367,143857099,143858823,143860207,143861094,143862415,143862801,143885209	143854142,143857350,143859161,143860447,143861308,143862513,143863796,143885373	1.000000
thyroid_gland_male_adult_54_years	chr14	68882879	68882993	68882879	-	High_confidence	7	7	50	1.758893	4.491862	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.980000
thyroid_gland_male_adult_54_years	chr8	32927967	32927984	32927976	+	High_confidence	50	58	148	5.206324	5.906277	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927988	33046237	STRG.46673.1	+	32927988,32996200,33041634,33044366	32928093,32996355,33041771,33046237	0.878378
thyroid_gland_male_adult_54_years	chr19	9725666	9725693	9725666	-	High_confidence	5	5	12	0.422134	3.584963	chr19	9725352	9730427	LTR|ERV1|HERVE_a-int	-	chr19	9724007	9725086	AC008759.1|ENST00000589783.1	-	9724007,9724391	9724295,9725086	1.000000
thyroid_gland_male_adult_54_years	chr17	6853886	6853939	6853928	+	High_confidence	27	28	176	6.191304	6.672604	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6895102	ALOX12P2|ENST00000576636.6	+	6853929,6854213,6892002,6894883,6895095	6854060,6854453,6892075,6895006,6895102	0.613636
thyroid_gland_male_adult_54_years	chr3	14225516	14225558	14225557	+	High_confidence	151	159	285	10.025692	5.811280	chr3	14225513	14226223	LTR|ERVK|HERVK3-int	+	chr3	14225530	14230150	STRG.17104.1	+	14225530,14229704	14225626,14230150	0.747368
thyroid_gland_male_adult_54_years	chr15	34588450	34588453	34588450	-	RAMPAGE_only	11	18	31	1.090514	4.260333	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34379067	34437466	GOLGA8A|NR_027409.1	-	34379067,34381700,34381967,34382150,34382385,34382796,34383440,34383745,34383960,34385047,34385253,34385426,34385739,34386624,34389643,34391122,34398633,34399154,34400711,34404916,34406673,34407523,34435382,34437397	34381613,34381856,34382068,34382251,34382529,34383053,34383528,34383853,34384047,34385157,34385338,34385474,34385778,34387952,34389768,34391426,34398729,34399203,34400759,34405055,34406870,34407735,34435471,34437466	0.645161
thyroid_gland_male_adult_54_years	chr14	81166171	81166252	81166251	-	RAMPAGE_only	10	11	45	1.583004	4.789417	chr14	81166191	81166439	LTR|ERVL-MaLR|MLT1J2	+	chr14	81012098	81170224	AC007262.2|ENST00000646052.1	-	81012098,81053682,81087466,81093581,81094214,81099398,81165192,81170108	81014404,81053816,81087652,81093737,81094324,81099526,81165381,81170224	0.777778
thyroid_gland_male_adult_54_years	chr9	62376595	62376647	62376632	+	High_confidence	11	12	50	1.758893	4.733661	chr9	62376600	62376639	SINE|MIR|MIRb	+	chr9	62376516	62434255	STRG.51002.1	+	62376516,62386773,62432875,62434066	62376813,62386883,62432979,62434255	0.880000
thyroid_gland_male_adult_54_years	chr8	144103552	144103594	144103593	-	High_confidence	4	4	12	0.422134	3.095795	chr8	144103289	144103558	SINE|MIR|MIR	-	chr8	144098636	144104190	SHARPIN|ENST00000398712.6	-	144098636,144098865,144099080,144099276,144099509,144099702,144099928,144103050,144103552	144098788,144098994,144099205,144099430,144099618,144099844,144100069,144103225,144104190	0.916667
thyroid_gland_male_adult_54_years	chr3	187021850	187021852	187021850	+	High_confidence	4	7	8	0.281423	2.807355	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021854	187042839	ST6GAL1|ENST00000440338.5	+	187021854,187038391,187038741,187042653	187022004,187038491,187038873,187042839	0.625000
thyroid_gland_male_adult_54_years	chr1	53905885	53905897	53905892	+	RAMPAGE_only	4	4	10	0.351779	2.947703	chr1	53905879	53905956	SINE|MIR|MIR3	+	chr1	53894187	53911085	DIO1|ENST00000613679.4	+	53894187,53904665,53904706,53906094,53909930	53894547,53904703,53904809,53906294,53911085	0.800000
thyroid_gland_male_adult_54_years	chr3	46558627	46558630	46558627	+	RAMPAGE_only	7	8	14	0.492490	3.392747	chr3	46558357	46558849	LINE|L1|L1MEf	-	chr3	46557397	46559688	LRRC2-AS1|ENST00000599511.1	+	46557397	46559688	0.571429
thyroid_gland_male_adult_54_years	chr2	130428509	130428524	130428523	-	High_confidence	14	15	49	1.723715	4.852045	chr2	130428373	130428505	SINE|Alu|AluY	-	chr2	130416749	130428546	FAR2P2|NR_046259.1	-	130416749,130419070,130425090,130425913,130427703	130418298,130419245,130425158,130426038,130428546	0.938776
thyroid_gland_male_adult_54_years	chr14	101731410	101731414	101731413	+	High_confidence	6	6	14	0.492490	3.182006	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.714286
thyroid_gland_male_adult_54_years	chr12	80778342	80778386	80778361	+	High_confidence	11	11	32	1.125692	4.625000	chr12	80778022	80778485	LTR|ERVL-MaLR|MLT1H	+	chr12	80778349	80781604	STRG.66012.1	+	80778349,80781440	80779045,80781604	0.937500
thyroid_gland_male_adult_54_years	chr1	33031619	33031620	33031619	-	RAMPAGE_only	6	6	7	0.246245	2.584963	chr1	33031545	33031766	SINE|MIR|MIRb	+	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.857143
thyroid_gland_male_adult_54_years	chr11	3512247	3512257	3512247	+	High_confidence	10	10	36	1.266403	4.390017	chr11	3510213	3513027	LTR|ERV1|HERVS71-int	-	chr11	3512138	3520965	STRG.58384.1	+	3512138,3520607	3512280,3520965	0.694444
thyroid_gland_male_adult_54_years	chr6	28354022	28354055	28354022	-	High_confidence	3	5	20	0.703557	4.021928	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324736	28354195	ZSCAN31|ENST00000396838.6	-	28324736,28327382,28329302,28336789,28337755,28341745,28353861,28354130	28326854,28327533,28329714,28336943,28337893,28341792,28353952,28354195	0.550000
thyroid_gland_male_adult_54_years	chr1	39527752	39528075	39527752	+	RAMPAGE_only	12	12	245	8.618577	4.870243	chr1	39527708	39527890	SINE|MIR|MIR3	+	chr1	39491645	39529869	BMP8A|NM_181809.3	+	39491645,39511173,39511755,39521375,39522402,39523006,39525648	39492325,39511363,39511904,39521570,39522482,39523117,39529869	0.975510
thyroid_gland_male_adult_54_years	chr20	24930628	24930676	24930639	+	High_confidence	407	415	2765	97.266799	6.656154	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930628	24932983	STRG.87695.1	+	24930628,24931346	24930774,24932983	0.984448
thyroid_gland_male_adult_54_years	chr5	34244734	34244754	34244753	-	High_confidence	4	4	13	0.457312	3.546594	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.615385
thyroid_gland_male_adult_54_years	chr7	30568893	30568913	30568893	-	RAMPAGE_only	3	3	8	0.281423	2.500000	chr7	30568321	30569340	LTR|ERV1|MER4-int	+	chr7	30558095	30573088	GARS-DT|ENST00000584621.5	-	30558095,30561465,30563730,30568832,30572999	30559355,30562128,30563998,30568989,30573088	0.625000
thyroid_gland_male_adult_54_years	chr8	50934716	50934776	50934775	-	High_confidence	321	324	699	24.589328	4.804260	chr8	50934564	50935650	LINE|L1|L1MCb	+	chr8	50933899	50934764	STRG.46954.1	-	50933899,50934221,50934693	50934050,50934461,50934764	0.879828
thyroid_gland_male_adult_54_years	chr2	174410329	174410372	174410371	+	High_confidence	6	6	27	0.949802	3.286790	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.888889
thyroid_gland_male_adult_54_years	chr6	91476210	91476216	91476210	+	High_confidence	370	386	635	22.337945	4.602268	chr6	91475986	91476298	LTR|ERVL-MaLR|MLT1N2	-	chr6	91476213	91478189	STRG.37149.1	+	91476213	91478189	0.987402
thyroid_gland_male_adult_54_years	chr1	176162918	176162937	176162936	-	RAMPAGE_only	6	6	12	0.422134	3.459432	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.666667
thyroid_gland_male_adult_54_years	chr16	68834133	68834230	68834133	+	RAMPAGE_only	3	3	39	1.371937	3.949205	chr16	68833960	68834253	SINE|Alu|AluJb	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.846154
thyroid_gland_male_adult_54_years	chr16	57641604	57641624	57641604	+	High_confidence	4	4	14	0.492490	3.026987	chr16	57641565	57641864	SINE|Alu|AluSz6	-	chr16	57640964	57651468	ADGRG1|ENST00000563414.5	+	57640964,57641590,57650252,57651199	57641064,57641708,57650351,57651468	0.857143
thyroid_gland_male_adult_54_years	chr10	89432271	89432317	89432316	+	High_confidence	7	8	40	1.407115	3.359918	chr10	89432362	89432418	SINE|MIR|MIR3	+	chr10	89432220	89432709	STRG.56674.1	+	89432220	89432709	0.875000
thyroid_gland_male_adult_54_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	11	11	11	0.386957	2.845351	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.909091
thyroid_gland_male_adult_54_years	chr14	36158723	36158848	36158723	-	RAMPAGE_only	5	5	40	1.407115	4.682587	chr14	36157673	36162691	LINE|L1|L1PA7	-	chr14	36136107	36176815	STRG.70435.2	-	36136107,36153803,36162623,36176297	36136356,36162247,36162683,36176815	0.975000
thyroid_gland_male_adult_54_years	chr12	12927723	12927751	12927733	+	High_confidence	151	151	346	12.171542	7.472082	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.526012
thyroid_gland_male_adult_54_years	chr17	7013056	7013074	7013073	+	High_confidence	6	6	11	0.386957	2.921928	chr17	7012918	7013141	SINE|Alu|AluSx	+	chr17	7013230	7014520	RNASEK|ENST00000552321.2	+	7013230,7013665,7014144	7013516,7013742,7014520	0.909091
thyroid_gland_male_adult_54_years	chr12	132277751	132277763	132277751	+	High_confidence	3	3	9	0.316601	2.641604	chr12	132277738	132277949	LTR|ERVL-MaLR|MLT1A0	+	chr12	132277348	132280900	AC148477.2|ENST00000537762.2	+	132277348,132278419	132277906,132280900	1.000000
thyroid_gland_male_adult_54_years	chr11	65434531	65434977	65434588	+	RAMPAGE_only	23	23	476	16.744664	6.883780	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.997899
thyroid_gland_male_adult_54_years	chr15	25115345	25115368	25115355	+	RAMPAGE_only	2	3	9	0.316601	3.169925	chr15	25115166	25115549	LTR|ERVL|MER54A	+	chr15	25116544	25120051	SNHG14|ENST00000626200.2	+	25116544,25118267,25119064	25117515,25118382,25120051	0.666667
thyroid_gland_male_adult_54_years	chr6	150392080	150392112	150392111	+	RAMPAGE_only	6	6	17	0.598024	3.577820	chr6	150392047	150392197	SINE|Alu|AluJb	-	chr6	150368996	150396890	IYD|ENST00000500320.7	+	150368996,150389351,150392344,150394098,150395454	150369209,150389543,150392504,150394255,150396890	0.529412
thyroid_gland_male_adult_54_years	chr2	159940553	159940573	159940558	-	RAMPAGE_only	3	3	9	0.316601	3.000000	chr2	159940405	159940556	SINE|Alu|AluJo	-	chr2	159803354	159945000	STRG.12955.3	-	159803354,159806972,159808448,159810525,159815404,159816805,159819725,159831669,159834043,159835479,159840728,159842244,159849979,159850361,159852200,159853272,159853629,159854359,159854903,159858361,159860820,159864838,159872450,159875443,159878323,159878632,159879258,159881082,159882123,159885152,159886419,159890212,159893913,159898687,159904898,159942126	159805222,159807140,159808571,159810675,159815573,159817032,159819920,159831786,159834211,159835645,159840955,159842374,159850140,159850467,159852340,159853352,159853697,159854535,159854939,159858476,159860889,159864920,159872593,159875643,159878493,159878721,159879369,159881240,159882315,159885293,159886530,159890377,159894084,159899059,159941992,159945000	0.888889
thyroid_gland_male_adult_54_years	chr8	124526271	124526281	124526280	-	RAMPAGE_only	12	18	37	1.301581	4.571861	chr8	124525908	124526339	LTR|ERV1|LTR56	+	chr8	124515923	124523479	TATDN1|ENST00000518133.5	-	124515923,124518741,124522150,124522936,124523206	124516030,124518881,124522200,124523002,124523479	0.513514
thyroid_gland_male_adult_54_years	chr21	42955784	42955834	42955802	-	High_confidence	34	36	188	6.613439	5.927578	chr21	42955408	42955905	LTR|ERV1|HERVE-int	-	chr21	42953392	42955805	STRG.89965.2	-	42953392,42955689	42955584,42955805	0.664894
thyroid_gland_male_adult_54_years	chr1	23177523	23177533	23177523	-	High_confidence	4	5	20	0.703557	3.576618	chr1	23177412	23177535	SINE|MIR|MIRb	+	chr1	23084029	23177808	LUZP1|ENST00000302291.8	-	23084029,23091189,23109021,23168765,23177490	23089053,23094380,23109127,23169024,23177808	0.950000
thyroid_gland_male_adult_54_years	chr21	33931413	33931418	33931417	+	High_confidence	3	3	8	0.281423	2.521641	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.500000
thyroid_gland_male_adult_54_years	chr2	26298416	26298437	26298416	+	RAMPAGE_only	1	1	7	0.246245	2.521641	chr2	26298403	26299683	LTR|ERV1|HERV15-int	+	chr2	26303047	26305221	STRG.9272.1	+	26303047	26305221	0.857143
thyroid_gland_male_adult_54_years	chr17	41871790	41871833	41871790	-	RAMPAGE_only	2	2	9	0.316601	2.947703	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.777778
thyroid_gland_male_adult_54_years	chr9	97843158	97843161	97843158	-	RAMPAGE_only	3	3	7	0.246245	2.584963	chr9	97842909	97843409	LTR|ERVL-MaLR|MLT1F2	+	chr9	97824767	97844274	STRG.52363.13	-	97824767	97844274	0.857143
thyroid_gland_male_adult_54_years	chr11	287308	287315	287308	+	High_confidence	3	3	8	0.281423	3.000000	chr11	287048	287379	LINE|L2|L2a	-	chr11	288037	288987	AC136475.3|ENST00000534742.1	+	288037,288949	288811,288987	1.000000
thyroid_gland_male_adult_54_years	chr2	201116023	201116034	201116033	+	High_confidence	7	8	16	0.562846	2.732915	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.937500
thyroid_gland_male_adult_54_years	chr18	49563679	49563705	49563681	+	RAMPAGE_only	19	25	50	1.758893	5.079449	chr18	49563415	49563839	LINE|L2|L2a	-	chr18	49562344	49567763	LIPG|ENST00000579750.1	+	49562344,49565316,49567441	49562405,49565498,49567763	0.760000
thyroid_gland_male_adult_54_years	chr5	67646708	67646729	67646708	-	High_confidence	2	3	9	0.316601	2.750000	chr5	67646558	67646761	SINE|MIR|MIRc	-	chr5	67627159	67646835	STRG.29591.1	-	67627159,67634306,67636807,67646605	67633335,67634395,67636948,67646835	0.555556
thyroid_gland_male_adult_54_years	chr16	28688557	28688558	28688557	+	High_confidence	7	7	10	0.351779	3.169925	chr16	28688394	28688869	LTR|ERVL|LTR41B	+	chr16	28688557	28735730	EIF3C|NM_001199142.1	+	28688557,28711656,28713700,28713908,28714320,28714635,28714818,28715306,28723163,28723447,28724321,28724657,28724918,28726604,28727020,28731828,28734519,28734777,28734931,28735172,28735430	28688828,28711787,28713766,28714098,28714446,28714690,28714928,28715434,28723323,28723551,28724463,28724783,28725012,28726795,28727245,28732192,28734679,28734843,28735019,28735335,28735730	0.900000
thyroid_gland_male_adult_54_years	chr9	129698737	129698747	129698737	+	RAMPAGE_only	8	12	33	1.160870	3.763647	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	1.000000
thyroid_gland_male_adult_54_years	chr1	27720178	27720179	27720178	-	RAMPAGE_only	6	7	8	0.281423	2.807355	chr1	27719941	27720396	LINE|L2|L2b	+	chr1	27666060	27672218	IFI6|ENST00000361157.10	-	27666060,27668225,27668457,27669244,27672122	27666475,27668375,27668535,27669346,27672218	0.625000
thyroid_gland_male_adult_54_years	chr20	35732306	35732368	35732367	-	High_confidence	6	6	22	0.773913	3.265583	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	1.000000
thyroid_gland_male_adult_54_years	chr15	24920435	24920485	24920454	+	High_confidence	16	30	98	3.447431	5.531232	chr15	24920380	24920543	DNA|hAT-Charlie|MER5A	-	chr15	24919667	24978539	STRG.73755.1	+	24919667,24920010,24920472,24921156,24962113,24967931,24974310,24975357,24976304,24976876,24977777,24978192,24978406	24919719,24920124,24920547,24921255,24962209,24968082,24974456,24975509,24976416,24977029,24977916,24978318,24978539	0.877551
thyroid_gland_male_adult_54_years	chr12	50924078	50924079	50924078	+	High_confidence	18	27	27	0.949802	3.902175	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	0.962963
thyroid_gland_male_adult_54_years	chr14	44798443	44798454	44798453	-	RAMPAGE_only	4	6	15	0.527668	3.324863	chr14	44798404	44800073	LTR|ERV1|LTR12C	+	chr14	44390944	44394048	STRG.71088.1	-	44390944	44394048	0.533333
thyroid_gland_male_adult_54_years	chr15	63942942	63942992	63942942	-	High_confidence	277	279	452	15.900395	7.253437	chr15	63942686	63942977	LINE|L2|L2c	+	chr15	63907922	63943049	STRG.75359.6	-	63907922,63911907,63912107,63924815,63925940,63929550,63930406,63939231,63942863	63908600,63911991,63912197,63924861,63926093,63929577,63930455,63939361,63943049	0.615044
thyroid_gland_male_adult_54_years	chr10	102449836	102449845	102449836	+	High_confidence	51	52	121	4.256522	5.455343	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102455883	STRG.57243.3	+	102449830,102450186,102455336	102450022,102451018,102455883	0.892562
thyroid_gland_male_adult_54_years	chr3	193402109	193402128	193402109	-	RAMPAGE_only	4	4	15	0.527668	3.773557	chr3	193402046	193402121	LTR|ERVL-MaLR|MLT1I	+	chr3	193398851	193442552	STRG.22653.7	-	193398851,193410981,193412177,193414578,193433844,193435647,193438474,193439022,193441465,193442392	193407393,193411070,193412371,193414750,193433917,193435744,193438584,193440637,193441588,193442552	1.000000
thyroid_gland_male_adult_54_years	chr5	177883461	177883489	177883470	+	RAMPAGE_only	88	90	619	21.775099	6.635922	chr5	177883451	177883608	SINE|MIR|MIR	+	chr5	177875521	177884272	AC106795.1|ENST00000506672.5	+	177875521,177876531,177878643,177882368,177882651,177883666	177875860,177876688,177878848,177882530,177882752,177884272	0.791599
thyroid_gland_male_adult_54_years	chr11	93499283	93499290	93499289	-	High_confidence	6	7	13	0.457312	3.251629	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	0.846154
thyroid_gland_male_adult_54_years	chr1	21665217	21665270	21665217	-	RAMPAGE_only	6	6	24	0.844269	3.153572	chr1	21665068	21665273	SINE|MIR|MIRb	-	chr1	21596221	21669300	RAP1GAP|ENST00000611549.4	-	21596221,21597685,21597960,21598399,21599493,21601683,21602803,21606065,21608212,21608849,21609574,21610119,21611451,21611715,21612025,21613175,21613627,21613985,21617305,21617933,21619024,21620014,21626303,21649760,21669253	21597264,21597728,21598095,21598502,21599617,21601797,21603912,21606197,21608350,21608936,21609646,21610275,21611581,21611816,21612109,21613229,21613706,21614089,21617491,21617972,21619072,21620050,21626397,21649796,21669300	0.916667
thyroid_gland_male_adult_54_years	chr3	50790120	50790137	50790120	+	RAMPAGE_only	2	2	14	0.492490	3.807355	chr3	50790032	50790807	LINE|L1|L1PB1	-	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.928571
thyroid_gland_male_adult_54_years	chr9	92536601	92536602	92536601	-	High_confidence	15	16	16	0.562846	3.773557	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.812500
thyroid_gland_male_adult_54_years	chr6	73637602	73637617	73637602	-	RAMPAGE_only	6	6	13	0.457312	3.238901	chr6	73637447	73637797	LINE|L2|L2a	+	chr6	73593378	73654014	SLC17A5|NM_012434.4	-	73593378,73600350,73610399,73615314,73621803,73635381,73636620,73638411,73641690,73644406,73653792	73595214,73600441,73610547,73615447,73621962,73635500,73636707,73638499,73641924,73644603,73654014	0.692308
thyroid_gland_male_adult_54_years	chr17	59892716	59892717	59892716	-	High_confidence	6	8	9	0.316601	3.000000	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.666667
thyroid_gland_male_adult_54_years	chr6	77369117	77369167	77369166	-	High_confidence	53	71	223	7.844664	6.570298	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77150486	77369165	STRG.36524.1	-	77150486,77151818,77271339,77273026,77350621,77368885	77151280,77151974,77271493,77273307,77350734,77369165	0.865471
thyroid_gland_male_adult_54_years	chr12	105041229	105041238	105041237	-	RAMPAGE_only	6	8	14	0.492490	3.664498	chr12	105040817	105042825	LINE|L1|L1MC4	-	chr12	105019913	105052894	STRG.66737.1	-	105019913,105026544,105030323,105031768,105034299,105038102,105039712,105040606,105046709,105046898,105049907,105052089,105052811	105024479,105026744,105030429,105031934,105034398,105038202,105039806,105040694,105046815,105046969,105050058,105052217,105052894	1.000000
thyroid_gland_male_adult_54_years	chr8	109581072	109581138	109581075	-	High_confidence	3	3	31	1.090514	3.132915	chr8	109580602	109581257	LINE|L2|L2c	+	chr8	109575974	109581058	SYBU|ENST00000527707.5	-	109575974,109577867,109579798,109580878	109576013,109578017,109580002,109581058	0.935484
thyroid_gland_male_adult_54_years	chr16	2757779	2757894	2757871	+	High_confidence	13	13	82	2.884585	5.305917	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2769248	STRG.76942.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2760300,2761560,2768504,2768996	2757945,2758547,2759047,2759172,2759402,2759661,2760499,2768261,2768767,2769248	0.914634
thyroid_gland_male_adult_54_years	chr4	185620073	185620127	185620116	-	RAMPAGE_only	5	5	30	1.055336	4.148394	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.700000
thyroid_gland_male_adult_54_years	chr7	101308299	101308317	101308316	+	High_confidence	6	6	22	0.773913	3.970573	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	1.000000
thyroid_gland_male_adult_54_years	chr15	24919584	24919587	24919584	+	High_confidence	10	10	16	0.562846	3.452820	chr15	24919446	24919852	LTR|ERV1|MER31A	-	chr15	24919667	24978539	STRG.73755.1	+	24919667,24920010,24920472,24921156,24962113,24967931,24974310,24975357,24976304,24976876,24977777,24978192,24978406	24919719,24920124,24920547,24921255,24962209,24968082,24974456,24975509,24976416,24977029,24977916,24978318,24978539	0.625000
thyroid_gland_male_adult_54_years	chr5	95509593	95509617	95509593	-	RAMPAGE_only	2	4	10	0.351779	3.169925	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	0.900000
thyroid_gland_male_adult_54_years	chr2	113220519	113220589	113220557	-	High_confidence	5	5	44	1.547826	3.565435	chr2	113220427	113220543	SINE|MIR|MIR	-	chr2	113218468	113220477	PAX8|ENST00000480684.1	-	113218468,113220091	113218609,113220477	0.931818
thyroid_gland_male_adult_54_years	chr8	38825346	38825367	38825366	+	RAMPAGE_only	7	9	21	0.738735	3.784184	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.904762
thyroid_gland_male_adult_54_years	chr6	52955040	52955041	52955040	+	RAMPAGE_only	18	18	18	0.633202	2.821888	chr6	52955078	52955376	SINE|Alu|AluSz6	+	chr6	52995619	52995950	RF00100|ENST00000365328.1	+	52995619	52995950	1.000000
thyroid_gland_male_adult_54_years	chr2	159940455	159940503	159940502	-	RAMPAGE_only	8	9	39	1.371937	4.756619	chr2	159940405	159940556	SINE|Alu|AluJo	-	chr2	159803354	159945000	STRG.12955.3	-	159803354,159806972,159808448,159810525,159815404,159816805,159819725,159831669,159834043,159835479,159840728,159842244,159849979,159850361,159852200,159853272,159853629,159854359,159854903,159858361,159860820,159864838,159872450,159875443,159878323,159878632,159879258,159881082,159882123,159885152,159886419,159890212,159893913,159898687,159904898,159942126	159805222,159807140,159808571,159810675,159815573,159817032,159819920,159831786,159834211,159835645,159840955,159842374,159850140,159850467,159852340,159853352,159853697,159854535,159854939,159858476,159860889,159864920,159872593,159875643,159878493,159878721,159879369,159881240,159882315,159885293,159886530,159890377,159894084,159899059,159941992,159945000	0.948718
thyroid_gland_male_adult_54_years	chr2	187514139	187514148	187514139	-	RAMPAGE_only	3	3	6	0.211067	2.584963	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.833333
thyroid_gland_male_adult_54_years	chr14	34536109	34536181	34536109	-	High_confidence	5	6	37	1.301581	4.454722	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.729730
thyroid_gland_male_adult_54_years	chr6	170410239	170410249	170410248	-	RAMPAGE_only	7	8	12	0.422134	3.277613	chr6	170410161	170410365	LINE|L1|L1M4c	+	chr6	170406441	170407714	STRG.39846.1	-	170406441	170407714	0.500000
thyroid_gland_male_adult_54_years	chr9	129489111	129489140	129489125	+	High_confidence	55	61	133	4.678656	6.060202	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.774436
thyroid_gland_male_adult_54_years	chr14	81427147	81427179	81427178	-	High_confidence	5	9	20	0.703557	3.681881	chr14	81426946	81427161	SINE|MIR|MIR	-	chr14	81260649	81427212	STON2|NM_033104.3	-	81260649,81276900,81370987,81395893,81398294,81427101	81270872,81278739,81371185,81396178,81398580,81427212	0.950000
thyroid_gland_male_adult_54_years	chr1	26284538	26284571	26284570	-	RAMPAGE_only	3	3	11	0.386957	2.846439	chr1	26284514	26284630	SINE|MIR|MIR3	-	chr1	26282304	26298026	UBXN11|ENST00000496466.1	-	26282304,26282648,26282863,26284141,26284361,26285822,26294204,26296918,26297426,26297961	26282569,26282789,26282937,26284281,26285541,26286037,26294331,26296995,26297481,26298026	0.818182
thyroid_gland_male_adult_54_years	chr13	52236182	52236227	52236182	-	High_confidence	3	4	19	0.668379	3.576618	chr13	52235788	52236194	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.842105
thyroid_gland_male_adult_54_years	chr7	6054548	6054582	6054548	-	RAMPAGE_only	5	6	27	0.949802	4.103465	chr7	6054207	6054503	SINE|Alu|AluSx1	-	chr7	6040975	6059175	STRG.40018.2	-	6040975,6042932,6044561,6046070,6046991,6048806,6049911,6054545,6058965	6041219,6042990,6044661,6046151,6047091,6048844,6050045,6054704,6059175	0.925926
thyroid_gland_male_adult_54_years	chr6	127330928	127330952	127330928	-	High_confidence	9	9	19	0.668379	3.572431	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.789474
thyroid_gland_male_adult_54_years	chr1	212233506	212233531	212233512	-	RAMPAGE_only	5	6	23	0.809091	3.795089	chr1	212233221	212233468	LINE|CR1|L3b	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	0.956522
thyroid_gland_male_adult_54_years	chr1	75376210	75376230	75376210	-	RAMPAGE_only	4	4	14	0.492490	3.238901	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.857143
thyroid_gland_male_adult_54_years	chr15	52548710	52548829	52548828	-	RAMPAGE_only	11	14	37	1.301581	4.400432	chr15	52548772	52548988	DNA|TcMar-Tigger|MamRep434	-	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	0.945946
thyroid_gland_male_adult_54_years	chr20	50172404	50172431	50172430	+	High_confidence	4	4	22	0.773913	4.121928	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.545455
thyroid_gland_male_adult_54_years	chr6	34757079	34757104	34757079	+	High_confidence	6	6	20	0.703557	3.511085	chr6	34757127	34757285	LINE|L2|L2a	+	chr6	34757093	34773857	SNRPC|NR_029472.1	+	34757093,34762594,34767907,34770290,34773445	34757551,34762703,34767997,34770395,34773857	0.950000
thyroid_gland_male_adult_54_years	chr6	34757208	34757216	34757215	+	High_confidence	3	3	9	0.316601	2.947703	chr6	34757127	34757285	LINE|L2|L2a	+	chr6	34757093	34773857	SNRPC|NR_029472.1	+	34757093,34762594,34767907,34770290,34773445	34757551,34762703,34767997,34770395,34773857	1.000000
thyroid_gland_male_adult_54_years	chr12	109053947	109053957	109053951	-	High_confidence	8	8	22	0.773913	3.754442	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.818182
thyroid_gland_male_adult_54_years	chr16	4483669	4483680	4483669	+	RAMPAGE_only	4	4	10	0.351779	2.846439	chr16	4483607	4483911	SINE|Alu|AluSz	-	chr16	4476458	4508197	HMOX2|ENST00000570445.5	+	4476458,4483636,4505483,4506894,4507712	4476487,4483754,4505610,4507012,4508197	0.900000
thyroid_gland_male_adult_54_years	chr19	3062734	3062735	3062734	-	High_confidence	5	5	8	0.281423	2.750000	chr19	3062710	3062746	SINE|MIR|MIR3	+	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	1.000000
thyroid_gland_male_adult_54_years	chr20	35263425	35263434	35263433	+	RAMPAGE_only	6	7	10	0.351779	2.721928	chr20	35263264	35263726	LINE|L2|L2b	+	chr20	35267246	35269987	STRG.88003.1	+	35267246,35269759	35267419,35269987	0.900000
thyroid_gland_male_adult_54_years	chr1	160350211	160350218	160350217	+	High_confidence	3	3	8	0.281423	2.521641	chr1	160350194	160350231	LINE|RTE-BovB|MamRTE1	-	chr1	160350104	160355753	NCSTN|ENST00000424645.6	+	160350104,160351287,160351695,160352053,160352886,160353159,160354117,160355654	160350250,160351372,160351805,160352206,160352991,160353237,160354290,160355753	0.875000
thyroid_gland_male_adult_54_years	chr8	109354822	109354823	109354822	-	High_confidence	17	17	23	0.809091	3.083765	chr8	109354679	109355292	LTR|ERV1|LTR58	+	chr8	109354088	109354700	STRG.48357.1	-	109354088	109354700	0.913043
thyroid_gland_male_adult_54_years	chr2	11201309	11201319	11201309	-	RAMPAGE_only	3	3	10	0.351779	2.725481	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.900000
thyroid_gland_male_adult_54_years	chr2	46903438	46903606	46903560	-	RAMPAGE_only	15	15	87	3.060474	4.998917	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	0.977011
thyroid_gland_male_adult_54_years	chr17	47056653	47056678	47056664	-	RAMPAGE_only	3	3	10	0.351779	2.721928	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.800000
thyroid_gland_male_adult_54_years	chr6	43013392	43013393	43013392	-	High_confidence	17	17	25	0.879447	4.483856	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
thyroid_gland_male_adult_54_years	chr21	42524977	42524994	42524988	+	RAMPAGE_only	3	3	11	0.386957	3.095795	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42513913	42581440	SLC37A1|ENST00000352133.2	+	42513913,42518276,42525775,42534697,42535471,42539511,42542403,42543435,42547102,42554061,42558957,42562077,42563814,42564707,42565826,42566984,42568359,42574817,42579735,42580344	42514717,42518510,42525857,42534830,42535550,42539647,42542480,42543602,42547140,42554142,42559089,42562168,42563877,42564793,42565875,42567058,42568438,42574915,42579800,42581440	0.818182
thyroid_gland_male_adult_54_years	chr19	20214057	20214145	20214119	+	High_confidence	8	9	66	2.321739	5.154577	chr19	20213862	20215311	Retroposon|SVA|SVA_D	+	chr19	20213932	20222463	STRG.85048.1	+	20213932,20218733,20219683	20214562,20218857,20222463	0.954545
thyroid_gland_male_adult_54_years	chr8	133090880	133090954	133090953	+	RAMPAGE_only	8	8	29	1.020158	4.651084	chr8	133090916	133091161	SINE|MIR|MIRb	+	chr8	133094622	133113496	TG|ENST00000522996.5	+	133094622,133096205,133113421	133095208,133096373,133113496	0.517241
thyroid_gland_male_adult_54_years	chr9	20658426	20658427	20658426	+	High_confidence	8	10	12	0.422134	2.688722	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658314	20912908	STRG.50048.6	+	20658314,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912908	0.916667
thyroid_gland_male_adult_54_years	chr1	56060768	56060769	56060768	-	RAMPAGE_only	10	10	10	0.351779	3.121928	chr1	56060567	56060748	SINE|MIR|MIRb	-	chr1	56048614	56050920	STRG.2237.1	-	56048614	56050920	0.600000
thyroid_gland_male_adult_54_years	chr3	33838239	33838293	33838256	+	RAMPAGE_only	8	8	37	1.301581	4.682162	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.810811
thyroid_gland_male_adult_54_years	chr3	134485443	134485494	134485443	-	High_confidence	12	13	64	2.251383	4.929229	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.968750
thyroid_gland_male_adult_54_years	chr8	17792747	17792756	17792755	-	RAMPAGE_only	14	14	39	1.371937	4.448861	chr8	17792581	17792869	SINE|Alu|AluSz6	+	chr8	17643803	17800668	MTUS1|ENST00000262102.10	-	17643803,17646981,17649845,17653185,17653424,17654560,17655862,17675185,17684327,17713213,17715766,17723671,17743603,17753716,17800597	17646139,17647079,17649962,17653281,17653498,17654666,17656065,17675252,17684542,17713252,17715901,17723833,17743799,17755961,17800668	0.743590
thyroid_gland_male_adult_54_years	chr11	44564426	44564431	44564426	+	High_confidence	19	19	41	1.442293	4.243943	chr11	44564373	44564477	SINE|MIR|MIRc	+	chr11	44564426	44615295	CD82|ENST00000526958.5	+	44564426,44587474,44594642,44600157,44605057,44605354,44615271	44564502,44587556,44594725,44600230,44605182,44605429,44615295	0.853659
thyroid_gland_male_adult_54_years	chr2	43277304	43277318	43277317	-	RAMPAGE_only	5	6	18	0.633202	3.503258	chr2	43277189	43277438	LINE|L2|L2	+	chr2	43230850	43570515	THADA|ENST00000407351.5	-	43230850,43232712,43279764,43286907,43291695,43292103,43292833,43320445,43344121,43397970,43485233,43498832,43505621,43508647,43527878,43541158,43549209,43551788,43552203,43556344,43560233,43566697,43570387	43231343,43232882,43279896,43287061,43291768,43292222,43293213,43320540,43344237,43398139,43485325,43498955,43505735,43508780,43527988,43541316,43549368,43551925,43552339,43556555,43560385,43566821,43570515	1.000000
thyroid_gland_male_adult_54_years	chr5	76938159	76938160	76938159	+	RAMPAGE_only	4	4	7	0.246245	2.807355	chr5	76938125	76938555	LTR|ERV1|MER39B	-	chr5	76952712	76969474	CRHBP|ENST00000274368.8	+	76952712,76953600,76954028,76955652,76958740,76963342,76968727	76953215,76953694,76954186,76955863,76958889,76963460,76969474	0.714286
thyroid_gland_male_adult_54_years	chr11	65429831	65430816	65430606	+	RAMPAGE_only	61	63	1133	39.856522	6.892785	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.998235
thyroid_gland_male_adult_54_years	chr2	29130347	29130348	29130347	-	High_confidence	292	298	416	14.633992	4.974174	chr2	29130249	29130396	LTR|ERV1|LTR109A2	-	chr2	29120115	29130408	STRG.9393.1	-	29120115	29130408	0.987981
thyroid_gland_male_adult_54_years	chr1	56062065	56062069	56062065	+	High_confidence	1662	1702	2607	91.708697	6.169353	chr1	56062109	56062170	DNA|hAT-Tip100|MamTip1	+	chr1	56062074	56092786	STRG.2251.1	+	56062074,56070299	56062178,56092786	0.737246
thyroid_gland_male_adult_54_years	chr1	25820158	25820193	25820192	+	High_confidence	7	7	28	0.984980	4.307355	chr1	25820183	25820280	SINE|MIR|MIR1_Amn	-	chr1	25820192	25832938	MTFR1L|ENST00000374301.7	+	25820192,25823018,25823643,25826301,25826614,25829508,25831920	25820414,25823128,25823748,25826411,25826826,25829830,25832938	0.785714
thyroid_gland_male_adult_54_years	chr4	99906556	99906612	99906556	-	High_confidence	4	5	21	0.738735	4.165894	chr4	99906288	99906508	LINE|CR1|L3	-	chr4	99900634	99906597	DNAJB14|ENST00000455208.5	-	99900634,99903725,99905596,99906037,99906516	99901152,99903898,99905706,99906153,99906597	0.857143
thyroid_gland_male_adult_54_years	chr2	113237946	113237960	113237946	-	RAMPAGE_only	4	5	15	0.527668	3.378783	chr2	113237927	113238013	DNA|DNA|MER135	-	chr2	113218527	113241683	STRG.11994.13	-	113218527,113220091,113226143,113235393,113236600	113218609,113220178,113227256,113235582,113241683	0.933333
thyroid_gland_male_adult_54_years	chr11	119046437	119046464	119046463	-	RAMPAGE_only	5	6	14	0.492490	3.093069	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119044191	119048825	STRG.62682.5	-	119044191,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713	119045654,119045834,119046467,119046802,119047818,119048080,119048370,119048563,119048825	1.000000
thyroid_gland_male_adult_54_years	chr17	28233986	28234043	28234030	-	High_confidence	249	255	1422	50.022925	6.104242	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28230451	28234034	STRG.80299.1	-	28230451,28233917	28233342,28234034	0.914205
thyroid_gland_male_adult_54_years	chr7	107660083	107660112	107660090	-	RAMPAGE_only	4	4	23	0.809091	3.916127	chr7	107660073	107660151	LINE|CR1|X6A_LINE	+	chr7	107656515	107661798	SLC26A4-AS1|NR_028137.1	-	107656515,107661601	107660206,107661798	0.869565
thyroid_gland_male_adult_54_years	chr15	55514003	55514014	55514013	-	High_confidence	48	51	80	2.814229	5.500071	chr15	55513405	55516274	LTR|ERV1|HERVE_a-int	-	chr15	55509923	55514639	STRG.75071.24	-	55509923,55514267,55514518	55513942,55514413,55514639	0.600000
thyroid_gland_male_adult_54_years	chr11	77175248	77175303	77175296	+	High_confidence	4	4	17	0.598024	3.734522	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
thyroid_gland_male_adult_54_years	chr22	30971689	30971706	30971705	+	High_confidence	2	3	7	0.246245	2.521641	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	1.000000
thyroid_gland_male_adult_54_years	chr12	105041320	105041338	105041320	-	RAMPAGE_only	3	4	10	0.351779	2.947703	chr12	105040817	105042825	LINE|L1|L1MC4	-	chr12	105019913	105052894	STRG.66737.1	-	105019913,105026544,105030323,105031768,105034299,105038102,105039712,105040606,105046709,105046898,105049907,105052089,105052811	105024479,105026744,105030429,105031934,105034398,105038202,105039806,105040694,105046815,105046969,105050058,105052217,105052894	0.900000
thyroid_gland_male_adult_54_years	chr6	36914686	36914687	36914686	+	RAMPAGE_only	6	6	6	0.211067	2.584963	chr6	36914707	36914996	SINE|Alu|AluSz6	+	chr6	36885863	36928964	C6orf89|NM_152734.3	+	36885863,36899425,36902220,36914283,36914553,36916444,36919577,36923346	36886028,36899633,36902434,36914435,36914693,36916574,36919701,36928964	0.833333
thyroid_gland_male_adult_54_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	35	36	36	1.266403	3.667533	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	0.972222
thyroid_gland_male_adult_54_years	chr1	58903674	58903680	58903674	-	High_confidence	2	3	7	0.246245	2.521641	chr1	58903524	58903639	SINE|MIR|MIRb	-	chr1	58882871	58903679	AC105277.1|ENST00000635492.1	-	58882871,58889148,58895844,58896997,58903567	58883734,58889208,58896009,58897090,58903679	1.000000
thyroid_gland_male_adult_54_years	chr19	51350339	51350379	51350355	-	RAMPAGE_only	4	4	21	0.738735	3.039633	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	1.000000
thyroid_gland_male_adult_54_years	chr4	105970289	105970452	105970409	+	RAMPAGE_only	21	21	130	4.573123	5.856038	chr4	105970389	105970602	LINE|CR1|Plat_L3	+	chr4	105959058	105971670	NPNT|ENST00000504787.1	+	105959058,105970384	105959126,105971670	1.000000
thyroid_gland_male_adult_54_years	chr14	36160234	36160344	36160234	-	RAMPAGE_only	13	14	59	2.075494	4.753335	chr14	36157673	36162691	LINE|L1|L1PA7	-	chr14	36136107	36176815	STRG.70435.2	-	36136107,36153803,36162623,36176297	36136356,36162247,36162683,36176815	0.983051
thyroid_gland_male_adult_54_years	chr17	28681390	28681398	28681397	+	RAMPAGE_only	5	5	11	0.386957	2.845351	chr17	28681439	28681743	SINE|Alu|AluSz6	+	chr17	28662197	28701735	SUPT6H|ENST00000347486.8	+	28662197,28672756,28673370,28674282,28674536,28674969,28675400,28676156,28677714,28678075,28678544,28678820,28681255,28681881,28682726,28682941,28683267,28683620,28684585,28684843,28686338,28686653,28687087,28687303,28688090,28689353,28690081,28690920,28693695,28695351,28696843,28697619,28697905,28699780,28700172,28700345,28700940,28701438	28662342,28672858,28673510,28674441,28674613,28675162,28675485,28676430,28677816,28678192,28678634,28678963,28681404,28681980,28682856,28683092,28683422,28683816,28684725,28684961,28686415,28686789,28687225,28687471,28688218,28689561,28690229,28691063,28693836,28695547,28697082,28697733,28698030,28699893,28700250,28700512,28701128,28701735	0.727273
thyroid_gland_male_adult_54_years	chr8	97930993	97931041	97930993	+	High_confidence	3	3	16	0.562846	3.750000	chr8	97931029	97931087	LINE|RTE-BovB|MamRTE1	+	chr8	97931340	98036214	MATN2|ENST00000518154.5	+	97931340,97941776,97978885,97994479,98003660,98007104,98007478,98016539,98017993,98021204,98027415,98030461,98032245,98033098,98033560,98035656	97931522,97941899,97979008,97994602,98003783,98007227,98007601,98016662,98018116,98021327,98027829,98030614,98032317,98033176,98033659,98036214	0.562500
thyroid_gland_male_adult_54_years	chr3	9973632	9973654	9973632	-	RAMPAGE_only	4	4	16	0.562846	3.625000	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	1.000000
thyroid_gland_male_adult_54_years	chr4	9102701	9102725	9102704	+	High_confidence	18	18	80	2.814229	5.177476	chr4	9097916	9105755	LTR|ERV1|HERVE-int	+	chr4	9102830	9103591	STRG.23375.1	+	9102830	9103591	0.750000
thyroid_gland_male_adult_54_years	chr11	65431101	65431295	65431244	+	RAMPAGE_only	20	21	141	4.960079	5.255954	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
thyroid_gland_male_adult_54_years	chr10	17181946	17181977	17181946	-	RAMPAGE_only	5	6	24	0.844269	4.105389	chr10	17181841	17182407	LTR|ERVL-MaLR|MLT1K	+	chr10	17157443	17174660	TRDMT1|ENST00000313936.14	-	17157443,17159145,17160304,17168840,17174550	17157784,17159229,17160374,17168917,17174660	0.541667
thyroid_gland_male_adult_54_years	chr6	28354137	28354206	28354205	-	High_confidence	91	98	222	7.809486	6.404282	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.626126
thyroid_gland_male_adult_54_years	chr5	69044019	69044046	69044045	-	High_confidence	4	5	17	0.598024	3.454822	chr5	69043966	69044273	SINE|Alu|AluSq	-	chr5	69026667	69043821	STRG.29723.1	-	69026667,69029787,69038518,69043442	69027995,69030163,69038576,69043821	0.941176
thyroid_gland_male_adult_54_years	chr2	201163895	201163956	201163955	+	RAMPAGE_only	5	5	19	0.668379	3.461320	chr2	201163983	201164293	SINE|Alu|AluSx1	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	0.947368
thyroid_gland_male_adult_54_years	chr2	71417011	71417016	71417011	+	RAMPAGE_only	5	5	9	0.316601	3.169925	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	1.000000
thyroid_gland_male_adult_54_years	chr21	8817837	8817838	8817837	+	RAMPAGE_only	12	13	15	0.527668	3.506891	chr21	8817416	8819072	LINE|L1|L1PB	-	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	0.866667
thyroid_gland_male_adult_54_years	chr7	100349884	100349885	100349884	+	RAMPAGE_only	7	7	9	0.316601	3.000000	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336124	100353692	STRG.43409.10	+	100336124,100338178,100338772,100345864,100349798,100351251,100352563,100353209,100353372	100336337,100338264,100338889,100345968,100349887,100352478,100353123,100353270,100353692	0.777778
thyroid_gland_male_adult_54_years	chr13	93454880	93454896	93454880	+	High_confidence	88	109	264	9.286957	4.979628	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93455119	94407316	STRG.69051.2	+	93455119,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93455438,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407316	0.981061
thyroid_gland_male_adult_54_years	chr8	11450178	11450187	11450186	-	RAMPAGE_only	6	6	10	0.351779	2.503258	chr8	11450098	11450248	LINE|L2|L2c	+	chr8	11424017	11445369	FAM167A|ENST00000528897.1	-	11424017,11444030,11445146	11424636,11444808,11445369	0.900000
thyroid_gland_male_adult_54_years	chr2	1552735	1552756	1552735	+	High_confidence	2	2	13	0.457312	3.546594	chr2	1552596	1553258	LTR|ERV1|ERV24_Prim-int	-	chr2	1552444	1554701	AC141930.2|ENST00000640435.1	+	1552444,1552737,1554169	1552554,1552857,1554701	0.769231
thyroid_gland_male_adult_54_years	chr8	144160991	144160992	144160991	+	High_confidence	9	11	11	0.386957	3.277613	chr8	144160811	144161348	LTR|ERVL-MaLR|MLT1E2	-	chr8	144161024	144261927	MROH1|ENST00000528919.5	+	144161024,144163770,144168294,144179454,144180177,144180424,144190783,144191714,144192308,144199121,144200427,144220599,144223107,144238755,144239034,144239322,144239613,144240100,144240569,144240991,144241394,144242368,144242601,144243493,144243862,144244221,144244443,144245155,144247300,144247566,144248876,144250211,144254812,144255508,144258776,144259239,144259910,144260185,144260676,144260906,144261113,144261283,144261654	144161089,144163848,144168440,144179586,144180340,144180523,144190935,144191855,144192401,144199200,144200541,144220673,144223230,144238863,144239179,144239363,144239755,144240153,144240677,144241111,144241517,144242515,144242628,144243616,144243942,144244336,144244539,144245260,144247436,144247679,144249029,144250366,144254978,144255705,144258914,144259354,144260057,144260374,144260832,144261041,144261216,144261349,144261927	0.818182
thyroid_gland_male_adult_54_years	chr1	21875628	21875658	21875657	-	High_confidence	6	6	13	0.457312	3.584963	chr1	21875470	21875616	SINE|MIR|MIRb	-	chr1	21823300	21874706	STRG.723.2	-	21823300,21823665,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615	21823451,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21864954,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874706	0.769231
thyroid_gland_male_adult_54_years	chr12	27579279	27579369	27579337	+	RAMPAGE_only	6	6	34	1.196047	4.513646	chr12	27579296	27579725	LINE|L1|L1ME3A	-	chr12	27599347	27647789	PPFIBP1|ENST00000542187.1	+	27599347,27633361,27634909,27646061,27647728	27599479,27633460,27635115,27646148,27647789	0.500000
thyroid_gland_male_adult_54_years	chr2	55618869	55618904	55618869	-	High_confidence	4	4	14	0.492490	3.324863	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.928571
thyroid_gland_male_adult_54_years	chr1	20685280	20685307	20685297	-	High_confidence	6	8	20	0.703557	4.037401	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.700000
thyroid_gland_male_adult_54_years	chr8	132971902	132972003	132971970	+	High_confidence	8	8	40	1.407115	4.693943	chr8	132971878	132972019	SINE|MIR|MIRc	-	chr8	132972260	133017967	TG|ENST00000522523.5	+	132972260,132972597,132983349,133011900,133013599,133017777	132972376,132972741,132983412,133012035,133013764,133017967	0.550000
thyroid_gland_male_adult_54_years	chr8	80485592	80485593	80485592	+	High_confidence	12	12	18	0.633202	3.614369	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.833333
thyroid_gland_male_adult_54_years	chr6	28080281	28080283	28080282	+	High_confidence	40	46	62	2.181028	4.541365	chr6	28079856	28080354	LTR|ERV1|LTR10A	+	chr6	28080303	28089563	STRG.34987.2	+	28080303,28085480,28086171,28088562	28080970,28085891,28086310,28089563	0.951613
thyroid_gland_male_adult_54_years	chr6	150386935	150386949	150386935	+	RAMPAGE_only	2	2	6	0.211067	2.584963	chr6	150385259	150386951	LINE|L1|L1ME3B	-	chr6	150369976	150395532	IYD|ENST00000425615.3	+	150369976,150389351,150392344,150394098,150395393	150370012,150389543,150392504,150394255,150395532	0.500000
thyroid_gland_male_adult_54_years	chr6	144349109	144349123	144349109	+	RAMPAGE_only	6	6	10	0.351779	2.503258	chr6	144349009	144349307	SINE|Alu|AluY	-	chr6	144344100	144426328	UTRN|ENST00000421035.2	+	144344100,144403122,144421877,144423548,144423985,144426286	144344304,144403184,144421970,144423626,144424078,144426328	0.500000
thyroid_gland_male_adult_54_years	chr19	40280831	40280856	40280831	-	High_confidence	4	4	8	0.281423	2.500000	chr19	40280545	40281038	LINE|L2|L2a	+	chr19	40242039	40280832	AKT2|ENST00000486368.6	-	40242039,40242533,40255157,40256925,40265221,40280781	40242069,40242687,40255269,40257054,40265351,40280832	0.750000
thyroid_gland_male_adult_54_years	chr6	31587007	31587010	31587009	+	High_confidence	10	15	16	0.562846	3.750000	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.937500
thyroid_gland_male_adult_54_years	chr1	21876237	21876247	21876237	-	RAMPAGE_only	4	4	12	0.422134	3.459432	chr1	21876092	21876241	LINE|L2|L2c	+	chr1	21822231	21937297	HSPG2|NM_005529.6	-	21822231,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174,21937154	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896310,21937297	0.916667
thyroid_gland_male_adult_54_years	chr2	1552516	1552534	1552533	+	High_confidence	2	2	8	0.281423	3.000000	chr2	1552132	1552593	LTR|ERV1|LTR24	-	chr2	1552444	1554701	AC141930.2|ENST00000640435.1	+	1552444,1552737,1554169	1552554,1552857,1554701	0.750000
thyroid_gland_male_adult_54_years	chr3	58565335	58565371	58565335	-	RAMPAGE_only	2	2	9	0.316601	2.725481	chr3	58565323	58565435	DNA|hAT-Charlie|Charlie19a	+	chr3	58564111	58577764	FAM107A|NM_007177.3	-	58564111,58567207,58569690,58570325,58577308	58566695,58567364,58569865,58570423,58577764	1.000000
thyroid_gland_male_adult_54_years	chr14	36173812	36173839	36173838	+	RAMPAGE_only	5	5	18	0.633202	3.197160	chr14	36173688	36175415	LINE|L1|L1MEf	-	chr14	36214606	36235608	AL162511.1|ENST00000556542.1	+	36214606,36215373,36235323	36215058,36215515,36235608	0.777778
thyroid_gland_male_adult_54_years	chr5	170267298	170267346	170267323	-	High_confidence	4	4	16	0.562846	3.577820	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170256556	170267327	LCP2|ENST00000520344.1	-	170256556,170258036,170258865,170261106,170262634,170262841,170262966,170267008	170256575,170258166,170258878,170261137,170262742,170262861,170262992,170267327	0.500000
thyroid_gland_male_adult_54_years	chr9	125538282	125538283	125538282	+	High_confidence	177	178	237	8.337154	5.469778	chr9	125538091	125538491	LINE|L2|L2	-	chr9	125538325	125542271	STRG.53413.1	+	125538325,125541134	125538364,125542271	0.940928
thyroid_gland_male_adult_54_years	chr9	89479889	89479890	89479889	-	High_confidence	73	74	80	2.814229	4.288986	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89402924	89479890	SEMA4D|ENST00000540475.5	-	89402924,89405350,89455887,89479571	89403016,89405699,89455953,89479890	0.975000
thyroid_gland_male_adult_54_years	chr2	160035356	160035364	160035356	+	High_confidence	44	44	78	2.743874	5.415219	chr2	160035321	160035476	LTR|ERVL|LTR16A	+	chr2	160035365	160061534	STRG.12952.1	+	160035365,160056125,160060462	160035501,160056230,160061534	0.820513
thyroid_gland_male_adult_54_years	chr5	159331943	159331978	159331962	+	High_confidence	3	3	10	0.351779	3.321928	chr5	159332002	159332069	LINE|L1|L1ME4b	+	chr5	159331517	159362834	AC008691.1|ENST00000515337.1	+	159331517,159332781,159347515,159354003,159362207	159332040,159333003,159347605,159354121,159362834	0.500000
thyroid_gland_male_adult_54_years	chr14	55352729	55352758	55352729	+	RAMPAGE_only	7	7	19	0.668379	3.826875	chr14	55352765	55352941	DNA|TcMar-Mariner|MARNA	+	chr14	55271302	55353609	FBXO34|ENST00000313833.4	+	55271302,55350380	55271537,55353609	0.947368
thyroid_gland_male_adult_54_years	chr2	159938244	159938387	159938282	-	RAMPAGE_only	10	10	68	2.392095	4.362037	chr2	159938238	159938433	LTR|ERVL-MaLR|MLT1J2	+	chr2	159803354	159945000	STRG.12955.3	-	159803354,159806972,159808448,159810525,159815404,159816805,159819725,159831669,159834043,159835479,159840728,159842244,159849979,159850361,159852200,159853272,159853629,159854359,159854903,159858361,159860820,159864838,159872450,159875443,159878323,159878632,159879258,159881082,159882123,159885152,159886419,159890212,159893913,159898687,159904898,159942126	159805222,159807140,159808571,159810675,159815573,159817032,159819920,159831786,159834211,159835645,159840955,159842374,159850140,159850467,159852340,159853352,159853697,159854535,159854939,159858476,159860889,159864920,159872593,159875643,159878493,159878721,159879369,159881240,159882315,159885293,159886530,159890377,159894084,159899059,159941992,159945000	0.970588
thyroid_gland_male_adult_54_years	chr15	55514423	55514472	55514423	-	High_confidence	35	37	93	3.271542	4.698317	chr15	55513405	55516274	LTR|ERV1|HERVE_a-int	-	chr15	55509923	55514639	STRG.75071.25	-	55509923	55514639	0.978495
thyroid_gland_male_adult_54_years	chrX	153463079	153463089	153463082	-	RAMPAGE_only	10	10	39	1.371937	4.465946	chrX	153463046	153463145	SINE|MIR|MIRb	-	chrX	153447669	153457191	HAUS7|ENST00000484394.5	-	153447669,153454393,153456264,153456492,153457136	153447909,153455766,153456364,153456651,153457191	0.897436
thyroid_gland_male_adult_54_years	chr1	26554708	26554735	26554734	+	RAMPAGE_only	6	6	17	0.598024	3.410417	chr1	26554776	26554842	SINE|MIR|MIR3	+	chr1	26545851	26574276	RPS6KA1|ENST00000531382.5	+	26545851,26546866,26547188,26551396,26551643,26553390,26554213,26554595,26555150,26555536,26556653,26556997,26558806,26560725,26561044,26561504,26571448,26571848,26572175,26573223,26574078	26546035,26546983,26547270,26551477,26551723,26553497,26554251,26554738,26555221,26555625,26556718,26557100,26558937,26560851,26561134,26561663,26571610,26571925,26572293,26573361,26574276	1.000000
thyroid_gland_male_adult_54_years	chr5	170267390	170267415	170267414	-	High_confidence	5	10	16	0.562846	3.006239	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170256556	170267327	LCP2|ENST00000520344.1	-	170256556,170258036,170258865,170261106,170262634,170262841,170262966,170267008	170256575,170258166,170258878,170261137,170262742,170262861,170262992,170267327	0.750000
thyroid_gland_male_adult_54_years	chr11	65440060	65440073	65440060	+	RAMPAGE_only	3	3	13	0.457312	3.546594	chr11	65439978	65440104	SINE|Alu|FLAM_C	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
thyroid_gland_male_adult_54_years	chr7	154928480	154928504	154928503	+	High_confidence	82	84	176	6.191304	6.102567	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.937500
thyroid_gland_male_adult_54_years	chr12	643625	643636	643635	-	High_confidence	25	25	68	2.392095	4.790290	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.941176
thyroid_gland_male_adult_54_years	chrX	35890901	35890902	35890901	+	RAMPAGE_only	23	23	29	1.020158	4.134336	chrX	35890725	35891088	LTR|ERVL|LTR41	+	chrX	35919733	35990147	CFAP47|ENST00000297866.9	+	35919733,35926016,35941282,35948313,35951130,35951802,35953591,35955960,35966564,35967618,35970767,35971585,35971868,35975146,35975671,35989318	35920048,35926168,35941398,35948452,35951359,35951963,35953719,35956196,35966754,35967832,35970923,35971772,35971965,35975363,35975913,35990147	0.724138
thyroid_gland_male_adult_54_years	chr15	65611629	65611653	65611652	+	High_confidence	2	2	6	0.211067	2.584963	chr15	65611666	65611863	SINE|Alu|AluSz	+	chr15	65611404	65660918	SLC24A1|NM_001301033.1	+	65611404,65612579,65618879,65623954,65639594,65644426,65645611,65650381,65651669,65652641,65660278,65660692	65611767,65612613,65618980,65625970,65639703,65644513,65645703,65650942,65651759,65652808,65660338,65660918	0.833333
thyroid_gland_male_adult_54_years	chr1	54200558	54200586	54200558	+	High_confidence	3	4	13	0.457312	3.251629	chr1	54200600	54200755	SINE|MIR|MIRb	+	chr1	54200203	54210131	MRPL37|ENST00000490670.1	+	54200203,54205017,54205294,54207359,54209945	54200241,54205201,54205410,54207504,54210131	0.615385
thyroid_gland_male_adult_54_years	chr4	158173024	158173025	158173024	-	High_confidence	33	33	46	1.618182	4.747191	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.913043
thyroid_gland_male_adult_54_years	chr4	177445145	177445149	177445145	+	High_confidence	3	3	9	0.316601	3.000000	chr4	177444910	177445732	LTR|ERV1|LTR1A2	+	chr4	177444978	177677126	AC078881.1|ENST00000507023.1	+	177444978,177451474,177593471,177596460,177623658,177675836	177445443,177451590,177593546,177596531,177623802,177677126	0.555556
thyroid_gland_male_adult_54_years	chr10	110083464	110083470	110083464	+	RAMPAGE_only	2	2	7	0.246245	2.584963	chr10	110083314	110083542	SINE|Alu|AluY	+	chr10	110007963	110135565	ADD3|ENST00000277900.12	+	110007963,110100624,110112776,110116258,110117341,110118586,110119210,110119465,110122109,110124016,110125825,110126416,110130362,110133325	110008299,110100848,110112915,110116410,110117422,110118736,110119354,110119564,110122292,110124274,110125945,110126503,110130486,110135565	0.571429
thyroid_gland_male_adult_54_years	chr2	178679652	178679672	178679658	-	RAMPAGE_only	3	3	9	0.316601	2.750000	chr2	178679617	178679655	LINE|CR1|L3	-	chr2	178636751	178702520	TTN|ENST00000414766.5	-	178636751,178639698,178640047,178640540,178641240,178642236,178673632,178674313,178678124,178678413,178678746,178681660,178682696,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453	178636799,178639788,178640110,178640630,178641315,178642317,178673710,178674409,178678208,178678497,178678830,178681738,178682903,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702520	0.666667
thyroid_gland_male_adult_54_years	chr22	30971746	30971763	30971753	+	High_confidence	2	2	9	0.316601	2.947703	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.777778
thyroid_gland_male_adult_54_years	chr9	128285730	128285731	128285730	+	RAMPAGE_only	6	7	9	0.316601	2.500000	chr9	128285776	128285871	LINE|L2|L2c	+	chr9	128276243	128288989	SWI5|ENST00000418976.1	+	128276243,128276706,128284509,128285938,128288651	128276402,128276755,128284631,128286033,128288989	0.555556
thyroid_gland_male_adult_54_years	chr9	116605987	116605995	116605987	-	RAMPAGE_only	6	6	10	0.351779	2.947703	chr9	116605863	116606013	SINE|MIR|MIR3	+	chr9	116425224	116687215	ASTN2|NM_198186.3	-	116425224,116440608,116442452,116487358,116618323,116620309,116651527,116686696	116426088,116440792,116442553,116487500,116618472,116620443,116651793,116687215	0.700000
thyroid_gland_male_adult_54_years	chr14	95516099	95516123	95516119	+	High_confidence	13	19	39	1.371937	4.855790	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.974359
thyroid_gland_male_adult_54_years	chr13	98988460	98988461	98988460	-	High_confidence	810	847	899	31.624902	5.049277	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98831395	98988488	STRG.69099.2	-	98831395,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98925836,98930167,98955434,98986223,98988177	98831530,98831786,98837609,98846060,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98923371,98925919,98930257,98955551,98986399,98988488	0.939933
thyroid_gland_male_adult_54_years	chr8	133499137	133499187	133499186	-	High_confidence	3	3	9	0.316601	3.169925	chr8	133499058	133499257	SINE|MIR|MIRb	+	chr8	133475883	133499361	ST3GAL1|ENST00000523855.1	-	133475883,133476277,133499134	133476074,133476600,133499361	0.777778
thyroid_gland_male_adult_54_years	chr2	3536827	3536868	3536845	-	High_confidence	4	4	21	0.738735	3.826875	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.809524
thyroid_gland_male_adult_54_years	chr17	43027194	43027207	43027194	+	RAMPAGE_only	3	3	7	0.246245	2.584963	chr17	43027173	43027300	LINE|CR1|X6A_LINE	-	chr17	43025240	43032041	RND2|NM_005440.4	+	43025240,43025959,43027182,43028060,43028431	43025449,43026047,43027292,43028195,43032041	0.857143
thyroid_gland_male_adult_54_years	chr5	151687233	151687245	151687233	-	High_confidence	4	4	11	0.386957	3.095795	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
thyroid_gland_male_adult_54_years	chr3	101692166	101692196	101692171	+	RAMPAGE_only	6	8	25	0.879447	4.103465	chr3	101691892	101692861	LTR|ERVK|LTR5_Hs	+	chr3	101684142	101706292	STRG.19768.2	+	101684142,101685848,101703020	101685322,101702369,101706292	1.000000
thyroid_gland_male_adult_54_years	chr15	57516608	57516634	57516633	+	RAMPAGE_only	31	54	166	5.839526	5.906517	chr15	57516656	57516717	SINE|MIR|MIR	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.981928
thyroid_gland_male_adult_54_years	chr2	187529384	187529404	187529403	-	RAMPAGE_only	3	3	8	0.281423	2.500000	chr2	187529293	187529670	LTR|ERVL-MaLR|MLT1B	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.750000
thyroid_gland_male_adult_54_years	chr2	233794206	233794257	233794206	+	RAMPAGE_only	28	42	204	7.176285	5.940568	chr2	233794052	233794248	SINE|MIR|MIR	-	chr2	233792464	233825135	STRG.16073.1	+	233792464,233793672,233794362,233795652,233795966,233796199,233798773,233799779,233800204,233802167,233803447,233804050,233804494,233805003,233807422,233807732,233809125,233810793,233811879,233813669,233814581,233816780,233818001,233818651,233819316,233819901,233822123,233822362,233822880,233823555	233792894,233793824,233794506,233795745,233796045,233796313,233798850,233799899,233800315,233802315,233803488,233804192,233804547,233805111,233807542,233807855,233809278,233810916,233811959,233813778,233814677,233816885,233818125,233818770,233819469,233820056,233822283,233822556,233823018,233825135	0.921569
thyroid_gland_male_adult_54_years	chr11	65181215	65181251	65181215	+	High_confidence	10	10	26	0.914625	4.026987	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	1.000000
thyroid_gland_male_adult_54_years	chr6	106970552	106971138	106970645	-	RAMPAGE_only	54	62	2036	71.622135	7.218334	chr6	106970529	106970829	SINE|Alu|AluSx1	+	chr6	106969830	106974039	CD24|NM_001291739.1	-	106969830,106973669	106971834,106974039	0.998527
thyroid_gland_male_adult_54_years	chr17	35432499	35432513	35432499	-	High_confidence	4	4	13	0.457312	3.418296	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.846154
thyroid_gland_male_adult_54_years	chr11	74070871	74070891	74070873	-	High_confidence	5	6	10	0.351779	2.725481	chr11	74070756	74071175	LINE|L2|L2c	+	chr11	74049518	74070869	C2CD3|ENST00000542484.1	-	74049518,74054606,74057405,74070505	74049542,74054671,74057544,74070869	0.800000
thyroid_gland_male_adult_54_years	chr2	219208247	219208272	219208251	+	RAMPAGE_only	6	6	13	0.457312	3.085055	chr2	219208198	219208283	LINE|RTE-BovB|MamRTE1	+	chr2	219207084	219209647	ZFAND2B|ENST00000464902.5	+	219207084,219207647,219207886,219208255,219208425,219208571	219207421,219207779,219208038,219208348,219208486,219209647	1.000000
thyroid_gland_male_adult_54_years	chr14	36136107	36136296	36136192	-	RAMPAGE_only	12	13	189	6.648617	5.211889	chr14	36135930	36136328	LTR|ERVL|MLT2A1	-	chr14	36135709	36176651	PTCSC3|NR_049735.2	-	36135709,36153803,36162623,36176297	36136356,36153894,36162683,36176651	0.920635
thyroid_gland_male_adult_54_years	chr1	84297786	84297813	84297812	-	RAMPAGE_only	3	3	7	0.246245	2.521641	chr1	84297812	84297908	SINE|Alu|Alu	+	chr1	84293457	84299281	STRG.3985.1	-	84293457	84299281	1.000000
thyroid_gland_male_adult_54_years	chr20	34022630	34022662	34022661	+	RAMPAGE_only	19	19	53	1.864427	4.283313	chr20	34022680	34022788	SINE|MIR|MIR3	+	chr20	34029860	34077129	RALY|ENST00000442805.1	+	34029860,34031521,34072065,34073562,34075873,34076701,34077027	34029927,34031604,34072330,34073635,34076040,34076815,34077129	0.830189
thyroid_gland_male_adult_54_years	chr6	3720076	3720077	3720076	-	High_confidence	21	21	24	0.844269	4.251629	chr6	3719558	3721329	LTR|ERV1|LTR12C	-	chr6	3719377	3720066	STRG.33860.1	-	3719377	3720066	0.916667
thyroid_gland_male_adult_54_years	chr16	56992022	56992040	56992022	+	RAMPAGE_only	6	6	11	0.386957	2.663533	chr16	56991822	56992273	LTR|ERVL-MaLR|MLT1C	+	chr16	56989562	56992444	NLRC5|ENST00000543141.5	+	56989562,56991914	56989595,56992444	0.818182
thyroid_gland_male_adult_54_years	chr12	46243208	46243235	46243208	-	RAMPAGE_only	1	1	8	0.281423	2.807355	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.875000
thyroid_gland_male_adult_54_years	chr14	75133987	75134004	75134001	-	RAMPAGE_only	4	4	14	0.492490	3.392747	chr14	75133229	75134244	LINE|L1|L1ME1	+	chr14	75131469	75176631	TMED10|ENST00000303575.8	-	75131469,75135759,75147663,75152031,75176354	75135006,75135886,75147737,75152143,75176631	0.928571
thyroid_gland_male_adult_54_years	chr5	23951353	23951372	23951359	+	High_confidence	8	8	21	0.738735	3.576618	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951347	24178265	C5orf17|NR_131245.1	+	23951347,23975996,23977780,23979936,24177836	23951803,23976050,23977922,23980841,24178265	0.857143
thyroid_gland_male_adult_54_years	chr8	11795578	11795579	11795578	+	High_confidence	77	77	105	3.693676	4.407726	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.942857
thyroid_gland_male_adult_54_years	chr16	68833979	68834061	68833979	+	RAMPAGE_only	17	17	73	2.567984	5.063265	chr16	68833960	68834253	SINE|Alu|AluJb	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	1.000000
thyroid_gland_male_adult_54_years	chr11	3380960	3380961	3380960	+	High_confidence	12	12	12	0.422134	3.418296	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.500000
thyroid_gland_male_adult_54_years	chr12	52118182	52118268	52118198	-	High_confidence	15	15	158	5.558103	6.152492	chr12	52116006	52118404	LTR|ERV1|HERVE-int	-	chr12	52092989	52118277	STRG.65067.2	-	52092989,52104158,52108068,52108931	52094852,52106001,52108853,52118277	1.000000
thyroid_gland_male_adult_54_years	chr2	3569711	3569762	3569711	-	High_confidence	6	6	37	1.301581	4.071582	chr2	3568503	3570040	Retroposon|SVA|SVA_D	-	chr2	3568646	3569990	STRG.8691.1	-	3568646	3569990	0.918919
thyroid_gland_male_adult_54_years	chr15	64130752	64130803	64130802	+	RAMPAGE_only	3	5	13	0.457312	3.392747	chr15	64130837	64131003	DNA|hAT-Charlie|MER58C	+	chr15	64095999	64138006	SNX1|ENST00000559844.5	+	64095999,64112572,64118116,64118787,64123502,64126078,64127173,64127730,64129915,64130227,64131686,64134663,64136329,64136860,64137567	64096172,64112684,64118244,64118854,64123546,64126220,64127252,64127806,64130029,64130321,64131892,64134807,64136410,64136932,64138006	0.692308
thyroid_gland_male_adult_54_years	chr20	50267477	50267500	50267477	+	High_confidence	7	10	28	0.984980	4.134336	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.857143
thyroid_gland_male_adult_54_years	chr5	77271180	77271208	77271180	+	RAMPAGE_only	2	2	7	0.246245	2.521641	chr5	77271211	77271351	LINE|L2|L2c	+	chr5	77246071	77309167	STRG.29988.12	+	77246071,77268875	77268766,77309167	0.857143
thyroid_gland_male_adult_54_years	chr10	17031902	17031931	17031930	+	High_confidence	99	103	288	10.131225	6.284601	chr10	17031877	17032057	LINE|CR1|L3	+	chr10	17031905	17033458	STRG.54275.1	+	17031905	17033458	0.902778
thyroid_gland_male_adult_54_years	chr5	150125450	150125474	150125450	-	RAMPAGE_only	4	4	14	0.492490	3.238901	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.857143
thyroid_gland_male_adult_54_years	chr4	152412488	152412529	152412488	-	High_confidence	9	9	38	1.336759	4.356498	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.921053
thyroid_gland_male_adult_54_years	chr21	28048413	28048414	28048413	+	High_confidence	8	8	8	0.281423	2.750000	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048413	28137609	LOC284825|NR_126010.1	+	28048413,28102549,28130529,28135313,28136689	28048537,28102769,28130622,28135708,28137609	0.875000
thyroid_gland_male_adult_54_years	chr10	49113828	49113890	49113851	+	High_confidence	142	154	614	21.599210	6.921776	chr10	49113750	49113872	SINE|MIR|MIRb	+	chr10	49113802	49115484	STRG.55104.1	+	49113802	49115484	0.990228
thyroid_gland_male_adult_54_years	chr8	98045641	98045660	98045659	+	High_confidence	4	4	25	0.879447	4.349649	chr8	98045692	98046014	SINE|Alu|AluJb	+	chr8	98045670	98047055	STRG.47915.1	+	98045670	98047055	0.920000
thyroid_gland_male_adult_54_years	chr11	65382641	65382702	65382641	-	High_confidence	28	30	75	2.638340	5.423958	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65379452	65382645	SLC25A45|ENST00000529962.5	-	65379452,65379866,65380131,65380533,65381874,65382485	65379561,65379938,65380175,65380622,65381969,65382645	0.546667
thyroid_gland_male_adult_54_years	chr2	169187994	169188126	169187994	-	High_confidence	6	6	59	2.075494	5.008253	chr2	169187889	169187969	DNA|TcMar-Tigger|Tigger19b	-	chr2	169128435	169188197	LRP2|ENST00000649153.1	-	169128435,169129012,169132573,169137391,169138576,169139250,169139542,169142673,169145746,169146738,169150897,169152798,169154459,169156273,169157370,169162471,169165931,169168538,169169701,169170550,169172014,169173095,169173918,169175192,169176410,169177802,169181447,169182166,169185502,169187969	169128830,169129084,169132681,169137493,169138706,169139371,169139610,169142793,169145923,169146959,169151026,169152964,169154603,169156405,169157502,169162600,169166054,169168676,169169818,169170667,169172134,169173224,169174164,169175389,169176588,169178026,169181618,169182319,169186019,169188197	0.932203
thyroid_gland_male_adult_54_years	chr8	143558019	143558020	143558019	+	High_confidence	17	18	18	0.633202	3.734522	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.888889
thyroid_gland_male_adult_54_years	chr1	171268995	171268996	171268995	+	High_confidence	49	49	51	1.794071	4.183302	chr1	171268815	171269160	LTR|ERVL-MaLR|THE1B	+	chr1	171269010	171285504	STRG.5988.1	+	171269010,171275345,171278728,171280785,171281977,171283143,171285201	171269086,171275508,171278871,171280985,171282333,171283216,171285504	0.960784
thyroid_gland_male_adult_54_years	chr8	27633359	27633365	27633359	+	High_confidence	5	5	11	0.386957	3.321928	chr8	27633291	27633377	SINE|MIR|MIR3	-	chr8	27633361	27673020	STRG.46542.1	+	27633361,27634043,27649701,27651507,27656781,27658495,27670899	27633597,27634207,27649800,27651627,27656880,27659539,27673020	0.909091
thyroid_gland_male_adult_54_years	chr2	9473639	9473651	9473650	+	High_confidence	3	4	7	0.246245	2.807355	chr2	9473556	9473708	DNA|hAT-Charlie|MER5B	-	chr2	9473657	9484548	IAH1|ENST00000496603.5	+	9473657,9478221,9481285,9484431	9473899,9478370,9481447,9484548	0.571429
thyroid_gland_male_adult_54_years	chr2	203533425	203533430	203533429	-	High_confidence	4	5	8	0.281423	2.521641	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.875000
thyroid_gland_male_adult_54_years	chr1	166850124	166850135	166850124	+	RAMPAGE_only	2	2	9	0.316601	3.169925	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
thyroid_gland_male_adult_54_years	chr7	87040212	87040223	87040212	-	High_confidence	53	56	99	3.482609	5.427745	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86925911	87040331	STRG.42827.3	-	86925911,86938125,86938807,86940009,86942017,86944898,86947726,86964903,87039755	86926916,86938214,86938960,86940115,86942104,86945046,86947922,86965024,87040331	0.939394
thyroid_gland_male_adult_54_years	chr3	139344535	139344573	139344547	+	High_confidence	120	124	395	13.895257	5.775168	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.941772
thyroid_gland_male_adult_54_years	chr6	125219777	125219778	125219777	+	High_confidence	11	12	12	0.422134	3.251629	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	1.000000
thyroid_gland_male_adult_54_years	chr19	20750334	20750371	20750334	-	High_confidence	72	88	451	15.865218	6.971341	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746876	20750368	STRG.85126.1	-	20746876,20749986,20750237	20749661,20750132,20750368	0.689579
thyroid_gland_male_adult_54_years	chr15	65642904	65642934	65642916	+	High_confidence	11	12	86	3.025296	5.484483	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	0.965116
thyroid_gland_male_adult_54_years	chr6	107872864	107872888	107872864	-	RAMPAGE_only	3	3	8	0.281423	2.521641	chr6	107872838	107872931	LINE|CR1|L3	+	chr6	107870764	107877400	SEC63|ENST00000459782.1	-	107870764,107872807,107876563	107871847,107872912,107877400	0.875000
thyroid_gland_male_adult_54_years	chr6	3175829	3175837	3175836	+	RAMPAGE_only	11	11	24	0.844269	4.136842	chr6	3175663	3176185	LTR|ERVL-MaLR|MLT1E3	+	chr6	3258976	3304054	STRG.33978.4	+	3258976,3263683,3302857	3259196,3263759,3304054	0.708333
thyroid_gland_male_adult_54_years	chr7	87231262	87231269	87231266	-	RAMPAGE_only	20	26	49	1.723715	5.094102	chr7	87230028	87231593	LTR|ERV1|MER52A	+	chr7	87196161	87220587	TMEM243|ENST00000433078.5	-	87196161,87197940,87199006,87219425,87220360	87196758,87198045,87199057,87219718,87220587	0.551020
thyroid_gland_male_adult_54_years	chrX	147937528	147937575	147937542	+	RAMPAGE_only	7	8	34	1.196047	4.690117	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950636	STRG.95778.10	+	147940580,147944868,147945533,147948682	147943326,147945051,147945616,147950636	1.000000
thyroid_gland_male_adult_54_years	chr17	68413648	68413649	68413648	+	High_confidence	6	6	9	0.316601	3.000000	chr17	68408123	68414142	LINE|L1|L1PA3	-	chr17	68413622	68533431	PRKAR1A|NM_001278433.1	+	68413622,68515393,68522755,68523724,68524015,68524911,68525753,68527839,68528869,68529919,68530276	68413795,68515576,68522926,68523816,68524077,68524958,68525912,68527900,68528991,68530001,68533431	0.555556
thyroid_gland_male_adult_54_years	chr20	50172544	50172567	50172544	+	High_confidence	2	3	9	0.316601	3.000000	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172549	50173370	LINC01273|ENST00000427333.5	+	50172549,50172922,50173201	50172788,50173017,50173370	0.666667
thyroid_gland_male_adult_54_years	chr15	97875616	97875640	97875639	-	High_confidence	17	19	95	3.341897	5.717290	chr15	97875560	97876737	LTR|ERV1|LTR12D	+	chr15	97703415	97875672	STRG.76515.6	-	97703415,97705460,97743329,97757608,97758489,97873952	97704108,97705527,97743483,97757775,97758661,97875672	1.000000
thyroid_gland_male_adult_54_years	chr14	81170364	81170413	81170392	-	High_confidence	20	23	128	4.502767	5.723157	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81149444	81170398	STRG.72769.1	-	81149444,81170108	81165381,81170398	0.859375
thyroid_gland_male_adult_54_years	chr15	88635654	88635661	88635654	+	High_confidence	6	6	13	0.457312	3.251629	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.615385
thyroid_gland_male_adult_54_years	chr19	19957988	19957992	19957991	+	High_confidence	51	51	93	3.271542	4.492871	chr19	19957700	19958100	LTR|ERVL|LTR66	+	chr19	19958462	19964632	STRG.85009.1	+	19958462,19963118	19958554,19964632	0.956989
thyroid_gland_male_adult_54_years	chr7	47401159	47401224	47401209	-	RAMPAGE_only	7	9	62	2.181028	5.099042	chr7	47401190	47401377	LINE|CR1|L3b	-	chr7	47369496	47403425	TNS3|ENST00000469470.1	-	47369496,47396799,47400392,47400784,47403267	47369621,47396904,47400458,47400914,47403425	0.580645
thyroid_gland_male_adult_54_years	chr10	85226058	85226081	85226058	-	RAMPAGE_only	2	3	7	0.246245	2.521641	chr10	85225767	85226116	LTR|ERVL-MaLR|MSTA	-	chr10	85193420	85198938	LINC01519|NR_120667.1	-	85193420,85195853,85197763,85198918	85194174,85196933,85197956,85198938	1.000000
thyroid_gland_male_adult_54_years	chr11	123061128	123061297	123061256	-	High_confidence	26	34	297	10.447826	6.095399	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.969697
thyroid_gland_male_adult_54_years	chr8	61578141	61578142	61578141	+	High_confidence	618	634	642	22.584190	5.528821	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.982866
thyroid_gland_male_adult_54_years	chr3	6067374	6067396	6067395	+	RAMPAGE_only	5	6	11	0.386957	2.663533	chr3	6067440	6067686	DNA|hAT-Charlie|MER5C	+	chr3	6148483	6365885	AC026167.1|ENST00000435651.1	+	6148483,6358900,6365728	6148578,6358947,6365885	0.636364
thyroid_gland_male_adult_54_years	chr16	81181325	81181331	81181330	-	High_confidence	7	7	17	0.598024	3.375000	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.823529
thyroid_gland_male_adult_54_years	chr19	20513324	20513396	20513324	-	High_confidence	16	16	64	2.251383	4.975652	chr19	20510335	20518101	LTR|ERV1|HERVE_a-int	-	chr19	20511829	20513392	STRG.85103.1	-	20511829,20513260	20512684,20513392	0.875000
thyroid_gland_male_adult_54_years	chr16	67415962	67416006	67416005	+	High_confidence	15	17	80	2.814229	5.073299	chr16	67415897	67416018	LINE|L2|L2b	+	chr16	67415907	67425843	STRG.78427.1	+	67415907,67425378	67416143,67425843	1.000000
thyroid_gland_male_adult_54_years	chr3	135965673	135965742	135965723	+	High_confidence	21	25	138	4.854546	5.351126	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	1.000000
thyroid_gland_male_adult_54_years	chr6	150392137	150392162	150392161	+	RAMPAGE_only	6	6	29	1.020158	4.110577	chr6	150392047	150392197	SINE|Alu|AluJb	-	chr6	150369976	150395532	IYD|ENST00000425615.3	+	150369976,150389351,150392344,150394098,150395393	150370012,150389543,150392504,150394255,150395532	0.586207
thyroid_gland_male_adult_54_years	chr9	33068829	33068884	33068829	-	RAMPAGE_only	3	3	20	0.703557	3.155565	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.950000
thyroid_gland_male_adult_54_years	chr4	65024367	65024369	65024368	-	High_confidence	5	8	10	0.351779	2.846439	chr4	65024156	65024597	LTR|ERVL-MaLR|MSTB1	-	chr4	64914280	65024485	LINC02232|ENST00000509932.2	-	64914280,64926591,64937606,64939272,64939955,64977488,65004402,65008781,65024236	64917643,64926661,64937839,64939365,64940036,64977629,65004501,65008912,65024485	0.500000
thyroid_gland_male_adult_54_years	chr3	29280823	29280851	29280838	-	High_confidence	2	2	10	0.351779	2.947703	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.500000
thyroid_gland_male_adult_54_years	chr10	65570509	65570522	65570519	+	High_confidence	25	38	114	4.010277	5.770363	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570524	65586058	STRG.55594.1	+	65570524,65571424,65572934,65585484	65570759,65571579,65573056,65586058	0.763158
thyroid_gland_male_adult_54_years	chr3	43490958	43490974	43490973	-	High_confidence	3	3	10	0.351779	2.947703	chr3	43490741	43491230	LTR|ERV1|MER50	+	chr3	43365847	43490917	STRG.17985.8	-	43365847,43432610,43490683	43366974,43432727,43490917	0.900000
thyroid_gland_male_adult_54_years	chr14	35294427	35294446	35294427	+	RAMPAGE_only	4	4	16	0.562846	3.625000	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	0.937500
thyroid_gland_male_adult_54_years	chr3	122183718	122183719	122183718	+	High_confidence	7	7	7	0.246245	2.521641	chr3	122183547	122183832	LINE|L2|L2c	-	chr3	122183682	122286497	CASR|NM_000388.3	+	122183682,122253947,122257080,122261527,122275811,122282112,122283686	122183812,122254374,122257387,122262412,122276042,122282236,122286497	1.000000
thyroid_gland_male_adult_54_years	chr10	6737341	6737415	6737341	+	High_confidence	6	6	31	1.090514	4.349200	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	1.000000
thyroid_gland_male_adult_54_years	chr1	189149633	189149656	189149646	+	High_confidence	11	11	45	1.583004	4.644107	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	189149642	189389879	STRG.6417.1	+	189149642,189150541,189307728,189389824	189149876,189150759,189307878,189389879	0.711111
thyroid_gland_male_adult_54_years	chr1	19344364	19344410	19344373	-	RAMPAGE_only	9	12	56	1.969960	4.549097	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.964286
thyroid_gland_male_adult_54_years	chr11	64226142	64226180	64226158	-	High_confidence	227	241	1159	40.771147	7.511303	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.970664
thyroid_gland_male_adult_54_years	chr15	34988764	34988792	34988791	-	High_confidence	4	4	13	0.457312	3.334679	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	1.000000
thyroid_gland_male_adult_54_years	chr3	187076618	187076645	187076618	+	RAMPAGE_only	2	2	10	0.351779	2.921928	chr3	187076438	187076681	LINE|L2|L2c	-	chr3	187071973	187078551	ST6GAL1|ENST00000470633.1	+	187071973,187073404,187075561	187072947,187074333,187078551	1.000000
thyroid_gland_male_adult_54_years	chrX	74000211	74000239	74000224	+	RAMPAGE_only	2	3	11	0.386957	2.646439	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944594	74010176	STRG.94199.4	+	73944594,73994839,73998767,73998953,74004269	73944662,73994961,73998844,74000496,74010176	0.909091
thyroid_gland_male_adult_54_years	chr9	135444046	135444054	135444046	-	High_confidence	4	5	17	0.598024	3.690117	chr9	135440176	135444140	LTR|ERV1|HERVE-int	-	chr9	135428801	135444309	STRG.53762.3	-	135428801	135444309	0.705882
thyroid_gland_male_adult_54_years	chr11	26567127	26567134	26567127	-	High_confidence	9	11	18	0.633202	3.155222	chr11	26566991	26567187	SINE|MIR|MIRc	-	chr11	26559032	26567094	MUC15|ENST00000436318.6	-	26559032,26563115,26565164,26567051	26561225,26563265,26565896,26567094	1.000000
thyroid_gland_male_adult_54_years	chr14	36162611	36162667	36162642	-	RAMPAGE_only	4	8	30	1.055336	4.012188	chr14	36157673	36162691	LINE|L1|L1PA7	-	chr14	36135709	36176651	PTCSC3|NR_049735.2	-	36135709,36153803,36162623,36176297	36136356,36153894,36162683,36176651	0.500000
thyroid_gland_male_adult_54_years	chr5	55982777	55982804	55982799	-	High_confidence	3	3	13	0.457312	3.238901	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.923077
thyroid_gland_male_adult_54_years	chr5	173746184	173746209	173746194	-	High_confidence	2	2	8	0.281423	2.521641	chr5	173745880	173746596	LTR|ERV1|MER4A	+	chr5	173719245	173746211	LINC01484|ENST00000518902.1	-	173719245,173746019	173719543,173746211	0.750000
thyroid_gland_male_adult_54_years	chr14	36161972	36162006	36161972	-	RAMPAGE_only	2	2	11	0.386957	3.121928	chr14	36157673	36162691	LINE|L1|L1PA7	-	chr14	36136107	36176815	STRG.70435.2	-	36136107,36153803,36162623,36176297	36136356,36162247,36162683,36176815	0.909091
thyroid_gland_male_adult_54_years	chr7	141119048	141119071	141119048	+	RAMPAGE_only	10	12	26	0.914625	4.623517	chr7	141119018	141119433	LTR|ERVL|LTR16C	-	chr7	141074231	141480380	TMEM178B|ENST00000565468.5	+	141074231,141212590,141437607,141470535	141074692,141212704,141437745,141480380	0.615385
thyroid_gland_male_adult_54_years	chr11	47769733	47769737	47769736	-	RAMPAGE_only	9	9	16	0.562846	3.056565	chr11	47769430	47769893	LTR|ERV1|LTR2	+	chr11	47716509	47767478	FNBP4|NM_001318339.1	-	47716509,47719928,47722975,47724027,47724467,47731373,47732536,47734024,47736615,47743952,47746055,47750915,47751142,47752915,47754527,47765269,47767062	47717512,47720086,47723316,47724172,47724778,47731561,47732670,47734129,47736740,47744163,47746394,47751036,47751290,47753102,47754664,47765362,47767478	0.937500
thyroid_gland_male_adult_54_years	chr6	79631425	79631464	79631441	+	High_confidence	8	8	49	1.723715	4.556051	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	1.000000
thyroid_gland_male_adult_54_years	chr19	10555125	10555126	10555125	-	RAMPAGE_only	9	9	10	0.351779	2.947703	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	0.900000
thyroid_gland_male_adult_54_years	chr16	28539432	28539437	28539432	-	High_confidence	2	2	9	0.316601	3.000000	chr16	28539431	28539724	SINE|Alu|AluSx1	-	chr16	28532707	28539174	NUPR1|ENST00000324873.7	-	28532707,28538005,28538795	28537669,28538155,28539174	0.888889
thyroid_gland_male_adult_54_years	chr7	2230553	2230578	2230553	-	High_confidence	2	2	7	0.246245	2.807355	chr7	2230469	2230994	DNA|MULE-MuDR|Ricksha_c	-	chr7	1815793	2230418	MAD1L1|ENST00000265854.11	-	1815793,1898199,1936686,1957628,1980452,2002064,2014501,2069193,2149151,2213211,2215884,2216156,2217961,2219331,2222574,2225409,2229983	1816228,1898390,1936897,1957719,1980541,2002121,2014642,2069338,2149238,2213273,2215999,2216287,2218043,2219456,2222754,2225550,2230418	1.000000
thyroid_gland_male_adult_54_years	chr3	14225322	14225332	14225322	+	High_confidence	6	8	18	0.633202	4.058814	chr3	14225057	14225513	LTR|ERVK|LTR3A	+	chr3	14225530	14230150	STRG.17104.1	+	14225530,14229704	14225626,14230150	0.777778
thyroid_gland_male_adult_54_years	chr11	71745875	71745936	71745914	+	High_confidence	163	168	1374	48.334388	6.583671	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.887191
thyroid_gland_male_adult_54_years	chr22	26512099	26512130	26512099	-	High_confidence	2	4	8	0.281423	2.750000	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	1.000000
thyroid_gland_male_adult_54_years	chr8	102930162	102930183	102930176	+	High_confidence	4	4	13	0.457312	3.085055	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.692308
thyroid_gland_male_adult_54_years	chr2	96637972	96638060	96637972	-	High_confidence	5	5	35	1.231225	4.172186	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96593171	96638020	KANSL3|ENST00000487070.5	-	96593171,96601642,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96611063,96612281,96612461,96612817,96613487,96615491,96619358,96631311,96636920,96637948	96595631,96601776,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96610883,96611138,96612353,96612563,96612934,96613619,96615544,96619544,96631482,96637185,96638020	0.914286
thyroid_gland_male_adult_54_years	chr9	129493433	129493452	129493444	+	High_confidence	3	3	11	0.386957	2.646439	chr9	129493238	129493460	SINE|MIR|MIR	+	chr9	129493576	129513683	LINC00963|ENST00000623185.3	+	129493576,129503322,129504891,129513418	129493595,129503672,129505043,129513683	0.636364
thyroid_gland_male_adult_54_years	chr15	57402037	57402038	57402037	+	RAMPAGE_only	7	7	7	0.246245	2.521641	chr15	57402062	57402472	LTR|ERVL-MaLR|MSTB	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
thyroid_gland_male_adult_54_years	chr20	37297344	37297345	37297344	+	High_confidence	8	8	8	0.281423	2.500000	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
thyroid_gland_male_adult_54_years	chr3	9986881	9986905	9986898	+	High_confidence	3	3	11	0.386957	3.121928	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.818182
thyroid_gland_male_adult_54_years	chr1	46280225	46280285	46280225	-	RAMPAGE_only	5	5	28	0.984980	2.574165	chr1	46280045	46280180	SINE|MIR|MIRb	-	chr1	46278400	46286112	LRRC41|ENST00000617760.4	-	46278400,46278906,46279181,46279491,46280191,46280395,46281124,46285361	46278905,46279084,46279257,46279614,46280290,46280560,46281385,46286112	1.000000
thyroid_gland_male_adult_54_years	chr3	19702554	19702602	19702568	-	High_confidence	5	5	22	0.773913	3.446439	chr3	19702399	19703772	LTR|ERV1|LTR12C	+	chr3	19400618	19702612	STRG.17297.1	-	19400618,19615974,19700927,19702342	19400647,19616053,19700985,19702612	0.681818
thyroid_gland_male_adult_54_years	chr11	74328213	74328234	74328218	+	RAMPAGE_only	10	10	37	1.301581	4.416608	chr11	74327828	74329146	Retroposon|SVA|SVA_B	+	chr11	74329342	74368823	STRG.61058.1	+	74329342,74368064	74329488,74368823	0.783784
thyroid_gland_male_adult_54_years	chr2	70085583	70085604	70085583	-	High_confidence	3	3	11	0.386957	3.121928	chr2	70085547	70085755	SINE|MIR|MIR	+	chr2	70029997	70086267	PCBP1-AS1|ENST00000416395.5	-	70029997,70032132,70051202,70085546,70086054	70031931,70032255,70051305,70085624,70086267	0.636364
thyroid_gland_male_adult_54_years	chr8	109354873	109354874	109354873	-	High_confidence	108	115	138	4.854546	4.960817	chr8	109354679	109355292	LTR|ERV1|LTR58	+	chr8	109354088	109354700	STRG.48357.1	-	109354088	109354700	0.637681
thyroid_gland_male_adult_54_years	chr1	75376268	75376269	75376268	-	RAMPAGE_only	9	10	14	0.492490	3.392747	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.571429
thyroid_gland_male_adult_54_years	chr12	123617832	123617864	123617863	+	High_confidence	5	5	10	0.351779	3.121928	chr12	123617854	123617910	LINE|RTE-X|L4_A_Mam	-	chr12	123618015	123620422	DDX55|ENST00000421670.3	+	123618015,123619431,123619963	123618837,123619724,123620422	1.000000
thyroid_gland_male_adult_54_years	chr5	154287456	154287470	154287469	+	High_confidence	13	13	20	0.703557	3.541446	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	0.900000
thyroid_gland_male_adult_54_years	chr6	151449830	151449870	151449830	+	High_confidence	8	8	55	1.934783	4.778428	chr6	151449629	151451218	Retroposon|SVA|SVA_D	+	chr6	151449686	151450427	STRG.39146.1	+	151449686	151450427	0.945455
thyroid_gland_male_adult_54_years	chr11	111097312	111097352	111097312	-	High_confidence	10	10	68	2.392095	4.477534	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.941176
thyroid_gland_male_adult_54_years	chr3	99691456	99691473	99691472	+	RAMPAGE_only	3	3	8	0.281423	2.750000	chr3	99691450	99691571	DNA|hAT-Charlie|MER5A1	+	chr3	99638621	99794508	COL8A1|ENST00000621757.1	+	99638621,99691398,99744896,99790679,99794229	99638664,99691568,99745021,99791010,99794508	0.875000
thyroid_gland_male_adult_54_years	chrX	120137207	120137218	120137207	+	RAMPAGE_only	3	3	9	0.316601	2.725481	chrX	120136863	120137319	LTR|ERV1|LTR36	-	chrX	120036235	120146854	RHOXF1-AS1|ENST00000553843.5	+	120036235,120120851,120138997,120143722,120145637	120036532,120121139,120139119,120143900,120146854	0.888889
thyroid_gland_male_adult_54_years	chrX	20204046	20204080	20204079	-	RAMPAGE_only	2	3	8	0.281423	2.521641	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.875000
thyroid_gland_male_adult_54_years	chr11	67848662	67848702	67848701	-	High_confidence	78	79	324	11.397629	5.703190	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67845199	67848718	STRG.60877.1	-	67845199,67848565	67847989,67848718	0.981481
thyroid_gland_male_adult_54_years	chr16	89904133	89904155	89904154	+	High_confidence	2	2	10	0.351779	2.947703	chr16	89904174	89904222	LINE|CR1|L3	+	chr16	89905008	89909174	TCF25|ENST00000563484.1	+	89905008,89906193,89907242,89908965	89905096,89906284,89907322,89909174	0.500000
thyroid_gland_male_adult_54_years	chr9	110170695	110170716	110170695	+	RAMPAGE_only	10	10	30	1.055336	4.615061	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
thyroid_gland_male_adult_54_years	chr18	49561366	49561450	49561369	+	High_confidence	6	9	68	2.392095	5.349671	chr18	49561276	49561483	SINE|MIR|MIRb	-	chr18	49561171	49592906	STRG.83217.3	+	49561171,49565316,49567441,49569436,49575368,49581414,49582361,49583555,49586745,49590500	49561890,49565498,49567621,49569548,49575590,49581657,49582482,49583774,49586850,49592906	0.970588
thyroid_gland_male_adult_54_years	chr1	21013074	21013143	21013102	-	RAMPAGE_only	57	66	249	8.759289	6.042107	chr1	21012696	21013221	LINE|L1|L1PBa	+	chr1	20973046	20982445	EIF4G3|ENST00000476088.1	-	20973046,20980333,20981047,20982387	20973099,20980448,20981227,20982445	0.574297
thyroid_gland_male_adult_54_years	chr2	159996258	159996324	159996323	-	RAMPAGE_only	342	352	545	19.171937	7.034492	chr2	159995925	159997907	LINE|L1|L1MCa	-	chr2	159932005	160062610	PLA2R1|ENST00000283243.12	-	159932005,159942126,159944905,159946800,159947418,159949607,159951339,159955198,159955697,159956509,159967538,159969255,159970147,159976067,159976684,159977283,159979829,159983927,159987155,160005651,160013262,160016613,160020105,160022664,160028217,160028849,160032958,160042024,160044773,160062294	159941992,159942159,159945082,159946917,159947559,159949776,159951578,159955346,159955828,159956627,159967678,159969359,159970212,159976225,159976720,159977416,159979914,159984073,159987358,160005821,160013375,160016712,160020263,160022859,160028361,160028963,160033132,160042198,160045157,160062610	0.812844
thyroid_gland_male_adult_54_years	chr9	39809843	39809865	39809858	-	High_confidence	15	21	54	1.899605	4.570181	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807694	39810013	STRG.50686.4	-	39807694	39810013	0.500000
thyroid_gland_male_adult_54_years	chr20	13206016	13206035	13206018	-	RAMPAGE_only	19	33	102	3.588142	5.700920	chr20	13205783	13206133	LTR|ERVL|LTR16C	-	chr20	13103078	13105853	STRG.87405.1	-	13103078	13105853	0.519608
thyroid_gland_male_adult_54_years	chrX	103577211	103577212	103577211	+	High_confidence	18	19	19	0.668379	3.725481	chrX	103577231	103577505	LINE|L1|L1ME3G	+	chrX	103576230	103587518	TCEAL4|ENST00000372629.4	+	103576230,103577093,103585624,103586218,103586648	103576532,103577213,103585760,103586301,103587518	0.947368
thyroid_gland_male_adult_54_years	chr2	107529599	107529600	107529599	+	High_confidence	4	4	7	0.246245	2.584963	chr2	107529145	107529729	LTR|ERV1|LTR9	-	chr2	107529486	107532478	STRG.11701.2	+	107529486	107532478	0.714286
thyroid_gland_male_adult_54_years	chr16	4355592	4355593	4355592	-	High_confidence	111	116	116	4.080632	4.769226	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.887931
thyroid_gland_male_adult_54_years	chr5	134875045	134875065	134875064	+	High_confidence	3	3	8	0.281423	2.521641	chr5	134874872	134875108	SINE|MIR|MIRb	-	chr5	134875095	134888180	TXNDC15|ENST00000508810.1	+	134875095,134887694	134875188,134888180	0.875000
thyroid_gland_male_adult_54_years	chr7	87039869	87039870	87039869	-	High_confidence	7	7	7	0.246245	2.521641	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.571429
thyroid_gland_male_adult_54_years	chr8	119875413	119875433	119875415	+	RAMPAGE_only	4	9	19	0.668379	3.350209	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.526316
thyroid_gland_male_adult_54_years	chr2	113222818	113223622	113223621	-	RAMPAGE_only	27	27	1078	37.921740	7.757495	chr2	113223533	113223885	LINE|L2|L2a	+	chr2	113218527	113235443	STRG.11994.18	-	113218527,113220091,113235393	113218609,113227256,113235443	0.994434
thyroid_gland_male_adult_54_years	chr19	48868595	48868631	48868595	-	High_confidence	580	619	2569	90.371938	7.683980	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.996107
thyroid_gland_male_adult_54_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	20	20	38	1.336759	3.628704	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.921053
thyroid_gland_male_adult_54_years	chr17	82081603	82081626	82081606	-	RAMPAGE_only	9	9	40	1.407115	4.462815	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	1.000000
thyroid_gland_male_adult_54_years	chr6	8672056	8672082	8672056	-	RAMPAGE_only	6	10	31	1.090514	3.415922	chr6	8671876	8672253	LTR|ERVL-MaLR|THE1D	-	chr6	8662058	8663414	STRG.34165.1	-	8662058	8663414	0.903226
thyroid_gland_male_adult_54_years	chr17	41757421	41757469	41757421	-	RAMPAGE_only	4	4	21	0.738735	3.684184	chr17	41757254	41757383	DNA|hAT-Tip100|MER91B	-	chr17	41754603	41785155	JUP|ENST00000393930.5	-	41754603,41755729,41756174,41757414,41757633,41758398,41758714,41762982,41764712,41764922,41767378,41768968,41769417,41771646,41784946	41755432,41755895,41756214,41757536,41757784,41758518,41758870,41763321,41764816,41765067,41767580,41769207,41769677,41771862,41785155	0.857143
thyroid_gland_male_adult_54_years	chr14	36161191	36161213	36161212	-	RAMPAGE_only	5	7	18	0.633202	3.350209	chr14	36157673	36162691	LINE|L1|L1PA7	-	chr14	36136107	36176815	STRG.70435.2	-	36136107,36153803,36162623,36176297	36136356,36162247,36162683,36176815	1.000000
thyroid_gland_male_adult_54_years	chr12	123390725	123390761	123390725	+	High_confidence	14	14	31	1.090514	4.128079	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.774194
thyroid_gland_male_adult_54_years	chr15	24919749	24919750	24919749	+	High_confidence	6	6	9	0.316601	2.500000	chr15	24919446	24919852	LTR|ERV1|MER31A	-	chr15	24919667	24978539	STRG.73755.1	+	24919667,24920010,24920472,24921156,24962113,24967931,24974310,24975357,24976304,24976876,24977777,24978192,24978406	24919719,24920124,24920547,24921255,24962209,24968082,24974456,24975509,24976416,24977029,24977916,24978318,24978539	0.666667
thyroid_gland_male_adult_54_years	chr19	11196131	11196213	11196131	-	High_confidence	5	5	39	1.371937	4.323732	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.923077
thyroid_gland_male_adult_54_years	chr19	20423690	20423704	20423703	-	High_confidence	41	63	158	5.558103	5.758642	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20395954	20423842	STRG.85087.7	-	20395954,20408949,20423480	20399038,20409045,20423842	0.848101
thyroid_gland_male_adult_54_years	chr17	2667091	2667196	2667195	+	High_confidence	7	7	40	1.407115	4.953056	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.850000
thyroid_gland_male_adult_54_years	chr5	133089588	133089693	133089677	+	RAMPAGE_only	27	28	92	3.236364	5.326680	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.967391
thyroid_gland_male_adult_54_years	chrX	16712880	16712911	16712889	-	High_confidence	7	7	44	1.547826	4.975418	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.863636
thyroid_gland_male_adult_54_years	chr22	37849317	37849333	37849317	-	High_confidence	65	66	194	6.824506	5.577552	chr22	37848992	37849280	SINE|Alu|AluSp	-	chr22	37848178	37849318	ANKRD54|ENST00000609706.1	-	37848178	37849318	0.984536
thyroid_gland_male_adult_54_years	chr19	3726268	3726275	3726268	+	High_confidence	13	13	27	0.949802	4.162295	chr19	3726316	3726584	SINE|Alu|AluSx1	+	chr19	3726279	3750770	STRG.84015.3	+	3726279,3728423,3728603,3730027,3730354,3731934,3733752,3734326,3735565,3735868,3736164,3738554,3738896,3740551,3743938,3746010,3746484,3746775,3747793,3750137,3750581	3726416,3728480,3728713,3730130,3730706,3732038,3733912,3734435,3735639,3735935,3736321,3738663,3739134,3740763,3744034,3746081,3746695,3746876,3748081,3750184,3750770	1.000000
thyroid_gland_male_adult_54_years	chr19	20358162	20358163	20358162	+	High_confidence	199	202	214	7.528063	6.175181	chr19	20357990	20358269	LTR|ERVL|LTR66	+	chr19	20358173	20372226	STRG.85082.2	+	20358173,20369177	20358333,20372226	0.892523
thyroid_gland_male_adult_54_years	chr2	113237071	113237137	113237117	-	High_confidence	12	14	46	1.618182	4.525589	chr2	113237106	113237236	SINE|MIR|MIR	-	chr2	113235344	113236929	PAX8|ENST00000554352.1	-	113235344,113236600	113235582,113236929	0.782609
thyroid_gland_male_adult_54_years	chr11	65440230	65440806	65440332	+	RAMPAGE_only	46	62	819	28.810672	6.885885	chr11	65440323	65440484	SINE|Alu|AluJo	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.997558
thyroid_gland_male_adult_54_years	chr2	217756562	217756577	217756562	-	High_confidence	5	7	22	0.773913	3.439936	chr2	217756466	217756533	SINE|MIR|MIR3	-	chr2	217284022	217756593	DIRC3|NR_026597.1	-	217284022,217317965,217318919,217325845,217327996,217425301,217426590,217427390,217432922,217433947,217478380,217599611,217756467	217284863,217318201,217319177,217325970,217328152,217425522,217426786,217427473,217433021,217434116,217478558,217600829,217756593	0.590909
thyroid_gland_male_adult_54_years	chr5	140700445	140700452	140700445	+	High_confidence	749	932	2098	73.803163	4.827329	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.980458
thyroid_gland_male_adult_54_years	chr7	102822458	102822459	102822458	-	RAMPAGE_only	4	4	7	0.246245	2.584963	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.714286
thyroid_gland_male_adult_54_years	chr3	52518326	52518345	52518344	+	High_confidence	4	4	8	0.281423	2.521641	chr3	52518378	52518454	SINE|MIR|MIR3	+	chr3	52518800	52523476	STAB1|ENST00000481626.5	+	52518800,52519263,52519943,52520399,52520641,52521360,52521595,52521843,52522036,52522329,52522554,52522774,52523024,52523221,52523426	52518869,52519564,52520290,52520549,52521005,52521510,52521700,52521951,52522230,52522474,52522688,52522940,52523134,52523341,52523476	0.625000
thyroid_gland_male_adult_54_years	chr17	45585820	45585834	45585833	-	High_confidence	5	6	10	0.351779	2.947703	chr17	45585678	45585861	SINE|Alu|AluSp	+	chr17	45506740	45585169	STRG.81014.1	-	45506740,45508484,45510243,45513184,45513867,45517177,45517860,45521306,45539162,45539891,45542763,45545604,45547726,45550632,45551439,45584571	45508406,45508539,45510293,45513289,45515525,45517282,45519518,45521425,45539243,45539963,45542835,45545676,45550055,45550732,45551537,45585169	0.600000
thyroid_gland_male_adult_54_years	chr1	1721622	1721673	1721636	-	High_confidence	14	17	52	1.829249	5.003042	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.884615
thyroid_gland_male_adult_54_years	chr6	169654640	169654675	169654640	-	RAMPAGE_only	2	2	8	0.281423	2.521641	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169652634	169656160	STRG.39768.1	-	169652634	169656160	0.500000
thyroid_gland_male_adult_54_years	chr3	194219216	194219217	194219216	-	RAMPAGE_only	5	5	8	0.281423	2.807355	chr3	194218998	194219264	LINE|L2|L2c	+	chr3	194203015	194206307	LOC100505920|NR_125404.1	-	194203015,194204818,194206247	194203679,194204966,194206307	0.750000
thyroid_gland_male_adult_54_years	chr16	28538626	28538646	28538626	-	High_confidence	3	4	12	0.422134	3.022055	chr16	28538407	28538698	SINE|Alu|AluJo	+	chr16	28537506	28538951	NUPR1|ENST00000567646.1	-	28537506,28538005,28538525,28538795	28537669,28538155,28538654,28538951	0.666667
thyroid_gland_male_adult_54_years	chr8	18063185	18063216	18063197	-	High_confidence	25	27	89	3.130830	5.361191	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.988764
thyroid_gland_male_adult_54_years	chr2	200889019	200889154	200889153	-	High_confidence	30	31	323	11.362451	6.931454	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200870955	200889154	PPIL3|ENST00000392283.8	-	200870955,200876918,200881420,200882341,200885697,200887612,200888955	200871521,200877037,200881488,200882435,200885772,200887685,200889154	0.888545
thyroid_gland_male_adult_54_years	chr10	134285	134326	134285	+	High_confidence	4	4	21	0.738735	4.011365	chr10	134050	134295	DNA|TcMar-Tigger|MER44A	-	chr10	134464	252470	ZMYND11|ENST00000397962.8	+	134464,179993,209888,221194,236837,237584,239437,240055,240892,242020,246765,247397,248335,248902,252347	134786,180128,210048,221356,236915,237677,239525,240111,240970,242139,246973,247466,248608,249088,252470	0.904762
thyroid_gland_male_adult_54_years	chr2	232816727	232816766	232816731	+	RAMPAGE_only	5	5	21	0.738735	3.784184	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.857143
thyroid_gland_male_adult_54_years	chr19	20362568	20362629	20362590	+	High_confidence	141	148	825	29.021739	6.855161	chr19	20362580	20362814	LTR|ERV1|HERVS71-int	+	chr19	20362557	20372226	STRG.85082.1	+	20362557,20369177	20362794,20372226	0.986667
thyroid_gland_male_adult_54_years	chr14	21360422	21360499	21360437	-	RAMPAGE_only	3	4	21	0.738735	3.932138	chr14	21360327	21360404	SINE|MIR|MIRb	-	chr14	21351471	21384266	SUPT16H|ENST00000216297.6	-	21351471,21353487,21353702,21354410,21357196,21357926,21358314,21359483,21360414,21360845,21361077,21362196,21362793,21363033,21363232,21363437,21364826,21365069,21366438,21368268,21369203,21369749,21370335,21371873,21373337,21383861	21352818,21353565,21353832,21354540,21357366,21358002,21358427,21359609,21360533,21360972,21361213,21362324,21362947,21363149,21363328,21363503,21364939,21365143,21366529,21368441,21369355,21369896,21370488,21372044,21373430,21384266	0.809524
thyroid_gland_male_adult_54_years	chr20	35315193	35315223	35315193	-	High_confidence	5	6	12	0.422134	3.277613	chr20	35315017	35315328	LINE|L2|L2c	-	chr20	35303970	35315436	UQCC1|ENST00000473982.6	-	35303970,35306665,35314687,35315176	35304069,35306779,35314765,35315436	0.500000
thyroid_gland_male_adult_54_years	chr16	68834299	68834355	68834354	+	RAMPAGE_only	10	11	37	1.301581	3.962454	chr16	68834273	68834516	SINE|Alu|AluJr	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.810811
thyroid_gland_male_adult_54_years	chr12	10553364	10553365	10553364	+	High_confidence	22	24	25	0.879447	4.168296	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.840000
thyroid_gland_male_adult_54_years	chrX	74255041	74255096	74255095	-	RAMPAGE_only	2	2	10	0.351779	2.947703	chrX	74254333	74256146	LTR|ERV1|HUERS-P3b-int	+	chrX	74219895	74292075	STRG.94215.2	-	74219895,74224841,74280930,74281701,74284742,74291757	74224675,74280494,74281085,74281848,74284944,74292075	0.900000
thyroid_gland_male_adult_54_years	chr1	159920334	159920386	159920334	-	RAMPAGE_only	5	6	24	0.844269	3.936260	chr1	159920065	159920288	LINE|CR1|L3b	-	chr1	159918106	159923717	TAGLN2|NM_001277224.1	-	159918106,159919273,159919660,159920329,159923435	159918941,159919376,159919835,159920537,159923717	0.916667
thyroid_gland_male_adult_54_years	chr8	97931074	97931114	97931074	+	High_confidence	2	2	10	0.351779	2.947703	chr8	97931029	97931087	LINE|RTE-BovB|MamRTE1	+	chr8	97931340	98036214	MATN2|ENST00000518154.5	+	97931340,97941776,97978885,97994479,98003660,98007104,98007478,98016539,98017993,98021204,98027415,98030461,98032245,98033098,98033560,98035656	97931522,97941899,97979008,97994602,98003783,98007227,98007601,98016662,98018116,98021327,98027829,98030614,98032317,98033176,98033659,98036214	0.700000
thyroid_gland_male_adult_54_years	chr10	93431475	93431497	93431475	-	RAMPAGE_only	3	3	12	0.422134	3.188722	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	1.000000
tibial_nerve_female_adult_51_years	chr3	134485443	134485489	134485443	-	High_confidence	4	4	21	1.800268	4.011365	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.761905
tibial_nerve_female_adult_51_years	chr5	109383500	109383504	109383500	-	High_confidence	4	5	9	0.771543	2.500000	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.888889
tibial_nerve_female_adult_51_years	chr5	38468428	38468444	38468428	-	High_confidence	6	6	26	2.228903	3.943465	chr5	38468426	38468568	SINE|MIR|MIRc	-	chr5	38466162	38468339	AC010457.1|ENST00000510137.1	-	38466162,38468238	38466398,38468339	0.692308
tibial_nerve_female_adult_51_years	chr3	29280838	29280877	29280876	-	High_confidence	7	7	28	2.400357	4.236369	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.500000
tibial_nerve_female_adult_51_years	chrX	48683362	48683363	48683362	+	High_confidence	9	14	14	1.200178	3.039149	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
tibial_nerve_female_adult_51_years	chr20	35153155	35153161	35153155	+	High_confidence	5	5	12	1.028724	2.732159	chr20	35152901	35155074	Retroposon|SVA|SVA_F	+	chr20	35153230	35177362	STRG.138635.1	+	35153230,35172088,35174701,35176167,35176697	35153567,35172224,35174953,35176446,35177362	0.500000
tibial_nerve_female_adult_51_years	chr17	59619894	59619923	59619894	+	High_confidence	525	588	1622	139.049246	5.914543	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.942047
tibial_nerve_female_adult_51_years	chr11	65440504	65440882	65440781	+	RAMPAGE_only	37	37	376	32.233364	5.981921	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65423637	65445540	STRG.94435.5	+	65423637,65437252	65437175,65445540	0.997340
tibial_nerve_female_adult_51_years	chr14	102235451	102235481	102235458	-	High_confidence	10	10	28	2.400357	3.824863	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.964286
tibial_nerve_female_adult_51_years	chr2	38073455	38073480	38073455	+	High_confidence	5	5	12	1.028724	3.251629	chr2	38073414	38073513	DNA|hAT|MER53	-	chr2	38073464	38131567	STRG.14427.2	+	38073464,38074306,38121984,38131510	38073490,38076560,38122225,38131567	1.000000
tibial_nerve_female_adult_51_years	chr17	42760431	42760447	42760431	-	High_confidence	4	4	10	0.857270	2.646439	chr17	42760261	42760392	SINE|MIR|MIRb	-	chr17	42756198	42761011	STRG.127544.1	-	42756198,42757899,42759738,42760425,42760634,42760879	42757799,42759022,42759880,42760509,42760711,42761011	0.800000
tibial_nerve_female_adult_51_years	chr11	58578102	58578138	58578132	-	High_confidence	17	23	102	8.744157	5.455220	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58527126	58578132	STRG.94028.3	-	58527126,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58577985	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578132	0.617647
tibial_nerve_female_adult_51_years	chr7	11192949	11192978	11192977	+	High_confidence	5	5	9	0.771543	2.500000	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11192963	11379366	STRG.64020.2	+	11192963,11244257,11248292,11379286	11193050,11244479,11248375,11379366	0.777778
tibial_nerve_female_adult_51_years	chr8	96513770	96513773	96513770	+	RAMPAGE_only	26	26	41	3.514808	4.241067	chr8	96513732	96513971	LINE|CR1|L3	+	chr8	96494007	96609643	SDC2|ENST00000522911.5	+	96494007,96593479,96602394,96608334,96609384	96494043,96593591,96602528,96608470,96609643	0.512195
tibial_nerve_female_adult_51_years	chr9	39810023	39810034	39810033	-	High_confidence	19	20	37	3.171900	4.343289	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	STRG.79944.3	-	39807694	39810013	0.729730
tibial_nerve_female_adult_51_years	chrX	73837439	73837504	73837439	-	RAMPAGE_only	11	11	41	3.514808	3.260478	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
tibial_nerve_female_adult_51_years	chr4	119242227	119242397	119242396	+	RAMPAGE_only	17	17	95	8.144068	4.946794	chr4	119241292	119242654	LINE|L1|L1MEc	-	chr4	119239639	119294638	STRG.41334.4	+	119239639,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119269690,119271295,119273631,119291164,119292337	119245429,119248882,119256359,119256523,119259925,119260653,119261864,119268420,119269837,119272034,119273708,119291261,119294638	0.989474
tibial_nerve_female_adult_51_years	chr10	105644347	105644368	105644347	+	High_confidence	38	40	60	5.143622	4.589111	chr10	105644158	105644712	LTR|ERVL|MLT2B3	+	chr10	105644338	105681414	STRG.89938.1	+	105644338,105663803,105677192	105644626,105663936,105681414	0.883333
tibial_nerve_female_adult_51_years	chr4	119174736	119174737	119174736	+	High_confidence	203	205	213	18.259858	5.076076	chr4	119173597	119175151	LTR|ERV1|LTR12C	+	chr4	119174754	119175351	STRG.41307.1	+	119174754	119175351	0.943662
tibial_nerve_female_adult_51_years	chr6	169654692	169654724	169654692	-	RAMPAGE_only	3	3	14	1.200178	3.378783	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169558320	169667275	WDR27|ENST00000546525.5	-	169558320,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197,169651929,169658275,169659085,169659450,169660662,169662303,169663562,169664165,169665485,169667135	169559927,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649275,169652008,169658358,169659207,169659518,169660766,169662424,169663649,169664286,169665556,169667275	0.500000
tibial_nerve_female_adult_51_years	chr18	46087118	46087119	46087118	-	High_confidence	10	10	10	0.857270	2.521928	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.900000
tibial_nerve_female_adult_51_years	chr2	9422801	9422818	9422817	-	High_confidence	8	8	15	1.285905	3.039149	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NM_001319068.1	-	9405680,9407448,9408112,9412268,9414177,9418625,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9422660	0.800000
tibial_nerve_female_adult_51_years	chr19	35115804	35115845	35115822	+	High_confidence	13	14	46	3.943443	4.629412	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_021910.2	+	35115827,35116263,35119167,35119362,35121077,35121221,35122764,35123270,35123440	35115959,35116359,35119251,35119416,35121110,35121245,35122954,35123308,35124324	0.739130
tibial_nerve_female_adult_51_years	chr14	81192644	81192722	81192644	-	RAMPAGE_only	4	4	20	1.714541	3.984184	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	1.000000
tibial_nerve_female_adult_51_years	chr6	140898419	140898422	140898419	-	High_confidence	13	13	36	3.086173	4.648956	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140575787	140898381	AL035446.2|ENST00000650553.1	-	140575787,140620907,140651477,140816131,140898187	140576557,140620995,140651561,140816230,140898381	0.611111
tibial_nerve_female_adult_51_years	chr1	179877329	179877344	179877329	-	High_confidence	3	3	9	0.771543	3.000000	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179865064	179877790	TOR1AIP2|ENST00000495650.1	-	179865064,179877692	179865854,179877790	0.888889
tibial_nerve_female_adult_51_years	chr8	133254723	133254757	133254756	-	High_confidence	3	3	10	0.857270	2.721928	chr8	133254749	133254865	LINE|L2|L2b	+	chr8	133246626	133254882	NDRG1|ENST00000521664.1	-	133246626,133247874,133248714,133250439,133254538	133246663,133247926,133248771,133250543,133254882	0.600000
tibial_nerve_female_adult_51_years	chr3	98763339	98763372	98763371	+	High_confidence	5	5	21	1.800268	3.784942	chr3	98763413	98763578	DNA|hAT-Tip100|MER91A	+	chr3	98763352	98788426	ST3GAL6|ENST00000492254.5	+	98763352,98768429,98770878,98772812,98773919,98784944,98788035,98788325	98763431,98768529,98770956,98772916,98773983,98785040,98788222,98788426	0.523810
tibial_nerve_female_adult_51_years	chr14	34536109	34536131	34536109	-	High_confidence	3	3	9	0.771543	3.000000	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.888889
tibial_nerve_female_adult_51_years	chr5	150118767	150118840	150118767	-	RAMPAGE_only	6	6	31	2.657538	3.952303	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.903226
tibial_nerve_female_adult_51_years	chr16	81181295	81181340	81181330	-	High_confidence	14	14	43	3.686262	4.651379	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.906977
tibial_nerve_female_adult_51_years	chr2	38082992	38083006	38082992	+	High_confidence	3	3	8	0.685816	2.750000	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.875000
tibial_nerve_female_adult_51_years	chr6	31586978	31587014	31587009	+	High_confidence	4	5	14	1.200178	2.896292	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.928571
tibial_nerve_female_adult_51_years	chr5	109383454	109383465	109383454	-	High_confidence	9	9	34	2.914719	4.454822	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
tibial_nerve_female_adult_51_years	chr14	81170392	81170427	81170402	-	High_confidence	10	10	42	3.600535	4.272804	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.976190
tibial_nerve_female_adult_51_years	chr1	196742007	196742046	196742045	+	RAMPAGE_only	5	5	19	1.628814	3.681881	chr1	196742092	196742390	SINE|Alu|AluSz	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.894737
tibial_nerve_female_adult_51_years	chr6	125219777	125219781	125219777	+	High_confidence	17	19	28	2.400357	4.056021	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	0.857143
tibial_nerve_female_adult_51_years	chr1	212792444	212792470	212792469	-	High_confidence	4	4	8	0.685816	2.521641	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.875000
tibial_nerve_female_adult_51_years	chr1	6208681	6208682	6208681	-	High_confidence	217	217	217	18.602766	4.323386	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.940092
tibial_nerve_female_adult_51_years	chr4	2867814	2867836	2867814	+	High_confidence	4	4	10	0.857270	2.725481	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.800000
tibial_nerve_female_adult_51_years	chr8	32927967	32927977	32927967	+	RAMPAGE_only	12	12	36	3.086173	4.479143	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.861111
tibial_nerve_female_adult_51_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	8	8	8	0.685816	3.000000	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
tibial_nerve_female_adult_51_years	chr3	188947214	188947237	188947236	+	High_confidence	7	7	20	1.714541	3.784184	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.550000
tibial_nerve_female_adult_51_years	chr2	210207567	210207617	210207596	-	RAMPAGE_only	8	8	34	2.914719	4.271371	chr2	210207053	210207602	LINE|L2|L2b	+	chr2	210187938	210219629	STRG.23680.12	-	210187938,210192803,210195210,210203330,210205631,210207366,210210195,210216346	210189054,210192890,210195338,210204682,210205796,210207614,210210262,210219629	0.911765
tibial_nerve_female_adult_51_years	chr9	19126413	19126437	19126436	-	RAMPAGE_only	4	4	11	0.942997	3.027169	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19108374	19127475	STRG.79085.1	-	19108374,19116358,19118320,19119649,19120879,19123564,19126113,19126396,19127418	19109537,19116649,19118455,19119831,19121165,19123647,19126309,19126448,19127475	0.909091
tibial_nerve_female_adult_51_years	chr14	77076182	77076194	77076193	-	RAMPAGE_only	12	12	42	3.600535	4.732927	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77074128	77075144	STRG.114728.2	-	77074128	77075144	0.761905
tibial_nerve_female_adult_51_years	chr6	35677284	35677332	35677306	-	RAMPAGE_only	7	8	23	1.971722	4.095795	chr6	35677058	35677372	SINE|Alu|AluY	-	chr6	35573589	35688915	STRG.55810.4	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35688093	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35684485,35688915	0.913043
tibial_nerve_female_adult_51_years	chr10	44971686	44971687	44971686	+	High_confidence	10	10	15	1.285905	3.373557	chr10	44971649	44971712	SINE|MIR|MIRb	-	chr10	44971793	44993430	RASSF4|ENST00000472561.5	+	44971793,44982520,44984812,44989273,44989669,44990947,44991904,44993268	44971848,44982663,44984970,44989375,44989721,44991069,44992002,44993430	0.600000
tibial_nerve_female_adult_51_years	chr3	135965670	135965749	135965723	+	High_confidence	35	47	153	13.116236	5.788798	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.993464
tibial_nerve_female_adult_51_years	chr20	9333276	9333277	9333276	+	RAMPAGE_only	7	7	9	0.771543	2.947703	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9307799	9480816	PLCB4|NM_000933.3	+	9307799,9337125,9338007,9338893,9362895,9365460,9371213,9372302,9373046,9380053,9384200,9387462,9389878,9390530,9393587,9395522,9401489,9407916,9408632,9409056,9411036,9419806,9421296,9423747,9435559,9437001,9443980,9444177,9453346,9457413,9459634,9468570,9472789,9473278,9476716,9478920	9307898,9337206,9338067,9339037,9362975,9365514,9371295,9372403,9373104,9380162,9384411,9387556,9389958,9390615,9393678,9395618,9401590,9408058,9408717,9409181,9411088,9419909,9421461,9423952,9435648,9437152,9444030,9444243,9453462,9457489,9459810,9468672,9472847,9473365,9476753,9480816	0.555556
tibial_nerve_female_adult_51_years	chr7	29970353	29970359	29970358	-	High_confidence	5	5	9	0.771543	2.947703	chr7	29969922	29970672	LINE|L2|L2a	+	chr7	29944096	29969938	SCRN1|ENST00000438497.5	-	29944096,29955178,29968908,29969803	29944179,29955360,29969068,29969938	1.000000
tibial_nerve_female_adult_51_years	chrX	5726110	5726129	5726116	-	RAMPAGE_only	8	9	27	2.314630	4.060262	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5719420	5719872	STRG.144276.1	-	5719420	5719872	0.555556
tibial_nerve_female_adult_51_years	chr17	42403939	42404016	42403958	-	RAMPAGE_only	15	16	66	5.657984	5.303156	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	0.939394
tibial_nerve_female_adult_51_years	chr1	153686722	153686731	153686730	+	RAMPAGE_only	6	6	14	1.200178	3.039149	chr1	153686764	153686881	SINE|MIR|MIR3	+	chr1	153678745	153693968	STRG.8067.3	+	153678745,153680500,153681703,153682497,153683375,153683739,153684963,153685805,153686645,153687015,153687199,153687633,153688052,153688952,153689187,153689452,153689805,153690283,153693105,153693351	153679829,153681293,153681839,153682589,153683511,153683824,153685084,153686200,153686750,153687087,153687356,153687789,153688221,153689099,153689311,153689521,153689980,153690382,153693197,153693968	0.857143
tibial_nerve_female_adult_51_years	chr1	16017955	16017957	16017955	-	High_confidence	13	15	20	1.714541	2.984770	chr1	16017886	16017984	LINE|CR1|L3	+	chr1	16015498	16018005	HSPB7|ENST00000406363.2	-	16015498,16017073,16017764	16015759,16017219,16018005	0.800000
tibial_nerve_female_adult_51_years	chr3	164451237	164451246	164451245	+	High_confidence	6	6	10	0.857270	2.503258	chr3	164449656	164452200	LINE|L1|L1PA15	-	chr3	164451414	164532520	STRG.33663.1	+	164451414,164532285	164451535,164532520	0.500000
tibial_nerve_female_adult_51_years	chr4	169581157	169581166	169581157	-	RAMPAGE_only	5	5	13	1.114451	3.418296	chr4	169581068	169581193	SINE|Alu|AluJr4	+	chr4	169476812	169585499	STRG.43984.10	-	169476812,169477431,169479402,169507036,169507714,169508247,169537808,169555719,169555931,169561479,169561686,169561831,169562136,169576927,169580841,169585348	169477352,169478380,169479534,169507132,169507792,169508331,169537911,169555851,169556095,169561554,169561737,169561891,169562196,169577079,169580902,169585499	0.692308
tibial_nerve_female_adult_51_years	chr15	85330219	85330246	85330219	-	RAMPAGE_only	1	1	7	0.600089	2.584963	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.571429
tibial_nerve_female_adult_51_years	chr6	35670522	35670710	35670522	-	RAMPAGE_only	6	6	71	6.086619	4.852015	chr6	35670455	35670761	SINE|Alu|AluSx1	+	chr6	35573589	35688915	STRG.55810.4	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35688093	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35684485,35688915	1.000000
tibial_nerve_female_adult_51_years	chr14	53217892	53217926	53217892	+	High_confidence	7	9	18	1.543087	3.614369	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217890	53369501	AL365295.1|ENST00000435322.1	+	53217890,53304807,53318030,53369454	53218055,53305053,53318138,53369501	0.611111
tibial_nerve_female_adult_51_years	chr5	167721348	167721349	167721348	+	RAMPAGE_only	12	12	12	1.028724	3.584963	chr5	167721329	167721823	LTR|ERVL-MaLR|MLT1D	-	chr5	167754935	168264157	TENM2|ENST00000519204.5	+	167754935,167875985,167952587,167992943,168047426,168062059,168090573,168098025,168118291,168124849,168126753,168162610,168190336,168195175,168198852,168199863,168203688,168204371,168211733,168215039,168216767,168218124,168226087,168227894,168244419,168246756,168260282,168262048	167755192,167876195,167952822,167993182,168047549,168062265,168090769,168098127,168118486,168125050,168126966,168162757,168190547,168195295,168199114,168200131,168203832,168204621,168211754,168215272,168216922,168218999,168226263,168228130,168244716,168248371,168260413,168264157	0.500000
tibial_nerve_female_adult_51_years	chr9	111284874	111284875	111284874	-	High_confidence	49	52	69	5.915165	5.191362	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.898551
tibial_nerve_female_adult_51_years	chr10	69495244	69495256	69495244	+	High_confidence	7	7	13	1.114451	2.688722	chr10	69495210	69495361	SINE|MIR|MIRc	+	chr10	69495134	69506995	TSPAN15|ENST00000459981.1	+	69495134,69495593,69498279,69504437,69506123,69506828	69495423,69495689,69498396,69504485,69506240,69506995	0.923077
tibial_nerve_female_adult_51_years	chr3	14047205	14047216	14047205	-	High_confidence	10	11	25	2.143176	4.053509	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14041145	14047125	STRG.26485.1	-	14041145,14046812	14041628,14047125	0.840000
tibial_nerve_female_adult_51_years	chrX	5726193	5726325	5726324	-	High_confidence	47	48	98	8.401249	4.831465	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.846939
tibial_nerve_female_adult_51_years	chr22	42721262	42721282	42721262	-	High_confidence	18	19	71	6.086619	4.370821	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.943662
tibial_nerve_female_adult_51_years	chr1	53082472	53082627	53082501	+	RAMPAGE_only	82	85	396	33.947905	6.296417	chr1	53082433	53082563	LINE|L2|L2c	-	chr1	53078649	53085501	STRG.3306.7	+	53078649,53080727,53081980	53079022,53080876,53085501	0.994949
tibial_nerve_female_adult_51_years	chr8	86417201	86417236	86417235	+	High_confidence	7	7	25	2.143176	3.969002	chr8	86417268	86417372	DNA|hAT-Charlie|MER58D	+	chr8	86417222	86431665	WWP1|ENST00000521079.1	+	86417222,86425222,86427642,86430696,86431405,86431614	86417279,86425318,86427817,86430751,86431490,86431665	0.680000
tibial_nerve_female_adult_51_years	chr12	8668603	8668621	8668603	+	RAMPAGE_only	8	12	28	2.400357	4.132944	chr12	8668440	8668935	LTR|ERVL-MaLR|MLT1F2	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.678571
tibial_nerve_female_adult_51_years	chr9	72363549	72363646	72363573	-	High_confidence	16	17	143	12.258966	4.872137	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72356945	72364346	STRG.81256.11	-	72356945,72359417	72357056,72364346	1.000000
tibial_nerve_female_adult_51_years	chr17	2667167	2667196	2667195	+	High_confidence	14	14	28	2.400357	4.235926	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.892857
tibial_nerve_female_adult_51_years	chr11	119046587	119046598	119046588	-	RAMPAGE_only	3	5	11	0.942997	3.277613	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	1.000000
tibial_nerve_female_adult_51_years	chr5	176411455	176411459	176411458	-	RAMPAGE_only	18	18	31	2.657538	4.323161	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.612903
tibial_nerve_female_adult_51_years	chr3	138347752	138347798	138347797	+	High_confidence	5	5	21	1.800268	2.833791	chr3	138347598	138347891	SINE|Alu|AluSx	-	chr3	138347780	138348248	STRG.32453.1	+	138347780	138348248	0.904762
tibial_nerve_female_adult_51_years	chr8	81441772	81441843	81441842	-	RAMPAGE_only	6	6	34	2.914719	4.197326	chr8	81441615	81442280	LINE|L1|L1MC4	-	chr8	81440325	81447484	PMP2|NM_002677.3	-	81440325,81444499,81444816,81447313	81443448,81444601,81444989,81447484	1.000000
tibial_nerve_female_adult_51_years	chr7	102822458	102822461	102822458	-	RAMPAGE_only	17	22	38	3.257627	4.402040	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.736842
tibial_nerve_female_adult_51_years	chr12	91179462	91179526	91179462	-	High_confidence	6152	6411	20734	1777.464284	7.736295	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.549966
tibial_nerve_female_adult_51_years	chr1	154435143	154435156	154435155	+	High_confidence	3	3	8	0.685816	3.000000	chr1	154435204	154435227	SINE|MIR|MIRc	+	chr1	154435009	154465314	IL6R|ENST00000507256.1	+	154435009,154448124,154449910,154454487,154465133	154435156,154448171,154449980,154454581,154465314	0.500000
tibial_nerve_female_adult_51_years	chr7	122075037	122075231	122075124	-	RAMPAGE_only	9	9	107	9.172792	5.287287	chr7	122074849	122075173	SINE|Alu|AluJr	-	chr7	122073543	122144290	AASS|NM_005763.3	-	122073543,122077837,122078861,122079596,122081499,122086011,122091702,122092842,122093047,122098449,122098744,122101370,122101620,122113117,122113597,122115073,122116632,122116878,122118306,122118562,122126374,122129360,122133516,122144160	122076607,122078014,122078950,122079712,122081595,122086179,122091843,122092951,122093158,122098576,122098866,122101438,122101680,122113229,122113720,122115222,122116760,122116957,122118453,122118630,122126459,122129537,122133741,122144290	0.971963
tibial_nerve_female_adult_51_years	chr5	67646708	67646812	67646810	-	High_confidence	85	116	293	25.118020	6.756637	chr5	67646558	67646761	SINE|MIR|MIRc	-	chr5	67627151	67646800	STRG.47364.1	-	67627151,67634306,67636807,67646605	67633335,67634395,67636948,67646800	0.767918
tibial_nerve_female_adult_51_years	chr3	15738511	15738512	15738511	+	High_confidence	379	389	391	33.519270	4.389312	chr3	15738158	15739435	LTR|ERVK|MER11B	-	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.992327
tibial_nerve_female_adult_51_years	chr6	36505070	36505091	36505090	-	RAMPAGE_only	49	54	134	11.487422	5.887806	chr6	36505057	36505226	DNA|hAT-Charlie|MER5B	+	chr6	36493891	36499158	STRG.55840.7	-	36493891,36497779,36498362	36496805,36497875,36499158	0.783582
tibial_nerve_female_adult_51_years	chr3	69999732	69999733	69999732	+	High_confidence	29	30	32	2.743265	4.195816	chr3	69999500	70000000	LTR|ERV1|LTR1A2	+	chr3	69999732	70014787	SAMMSON|ENST00000641286.1	+	69999732,70012356,70013519	69999867,70012598,70014787	0.812500
tibial_nerve_female_adult_51_years	chr9	124804296	124804319	124804318	+	RAMPAGE_only	3	3	9	0.771543	2.725481	chr9	124804356	124804442	DNA|hAT-Charlie|MER58B	+	chr9	124800873	124814891	OLFML2A|NM_001282715.1	+	124800873,124801413,124804093,124807780,124809807	124801074,124801663,124804342,124807966,124814891	1.000000
tibial_nerve_female_adult_51_years	chr1	23417917	23417997	23417917	-	RAMPAGE_only	9	9	46	3.943443	4.854977	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	1.000000
tibial_nerve_female_adult_51_years	chr2	200857745	200857778	200857745	-	High_confidence	2	2	7	0.600089	2.807355	chr2	200857615	200857696	LINE|L1|L1MA8	-	chr2	200853097	200858166	CLK1|ENST00000409769.6	-	200853097,200853902,200854615,200855003,200856681,200856890,200857717,200857972	200853449,200853993,200854695,200855086,200856811,200856985,200857884,200858166	1.000000
tibial_nerve_female_adult_51_years	chr16	2770026	2770079	2770078	+	High_confidence	12	22	49	4.200625	4.621423	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2771410	STRG.122141.20	+	2769894,2770603,2770857,2771120	2770465,2770717,2771049,2771410	1.000000
tibial_nerve_female_adult_51_years	chr8	27977120	27977126	27977125	-	High_confidence	221	256	390	33.433543	6.630745	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977116	STRG.73291.3	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977116	0.858974
tibial_nerve_female_adult_51_years	chr9	39809843	39809857	39809856	-	High_confidence	4	4	11	0.942997	3.121928	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.545455
tibial_nerve_female_adult_51_years	chr3	33838256	33838261	33838256	+	RAMPAGE_only	3	3	12	1.028724	3.095795	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.916667
tibial_nerve_female_adult_51_years	chr16	4355592	4355593	4355592	-	High_confidence	100	100	100	8.572703	5.627369	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.790000
tibial_nerve_female_adult_51_years	chr1	28617958	28617998	28617960	-	RAMPAGE_only	5	9	15	1.285905	3.323231	chr1	28617880	28617910	SINE|MIR|MIR	-	chr1	28603100	28643005	TAF12|ENST00000263974.4	-	28603100,28605371,28613246,28617952,28621913,28642654	28603574,28605460,28613361,28618030,28622165,28643005	1.000000
tibial_nerve_female_adult_51_years	chr2	179043807	179043808	179043807	-	RAMPAGE_only	9	9	11	0.942997	3.277613	chr2	179042647	179044414	LINE|L1|L1PA10	+	chr2	178829756	179050059	CCDC141|NM_173648.3	-	178829756,178836893,178845625,178850048,178853440,178855346,178856256,178865766,178868025,178869116,178871426,178872132,178877963,178884900,178886751,178888526,178905328,178918712,178944534,178961229,178975056,178978483,179047283,179049839	178834440,178837744,178845742,178850161,178853624,178855541,178856397,178865916,178868205,178869305,178871552,178872312,178878143,178885092,178886871,178888668,178905501,178918907,178944651,178961483,178975165,178978675,179047406,179050059	0.727273
tibial_nerve_female_adult_51_years	chr5	140700445	140700452	140700445	+	High_confidence	505	578	907	77.754418	5.504881	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.986770
tibial_nerve_female_adult_51_years	chr5	24271820	24271854	24271853	-	High_confidence	5	5	12	1.028724	2.663533	chr5	24271508	24272027	LTR|ERVL|MLT2A2	-	chr5	24268010	24271683	STRG.45756.1	-	24268010,24271567	24268484,24271683	0.750000
tibial_nerve_female_adult_51_years	chr22	18149868	18149883	18149868	+	High_confidence	28	28	47	4.029171	3.577697	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.978723
tibial_nerve_female_adult_51_years	chr15	71691468	71691469	71691468	-	High_confidence	10	13	13	1.114451	3.392747	chr15	71691454	71691674	SINE|MIR|MIRb	+	chr15	71688700	71691539	THSD4-AS2|NR_120346.1	-	71688700,71690659,71691365	71690554,71690770,71691539	0.538462
tibial_nerve_female_adult_51_years	chr11	77175226	77175303	77175302	+	High_confidence	31	32	89	7.629706	5.300643	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.932584
tibial_nerve_female_adult_51_years	chr11	107441577	107441593	107441577	-	RAMPAGE_only	3	3	10	0.857270	2.503258	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	0.900000
tibial_nerve_female_adult_51_years	chr4	119217542	119217650	119217569	+	RAMPAGE_only	10	12	92	7.886887	5.301203	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119213178	119239312	USP53|ENST00000510737.1	+	119213178,119214069,119217549,119235289,119239217	119213218,119214222,119217673,119235411,119239312	0.532609
tibial_nerve_female_adult_51_years	chr3	14047155	14047156	14047155	-	High_confidence	12	12	12	1.028724	3.251629	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14041145	14047125	STRG.26485.1	-	14041145,14046812	14041628,14047125	0.833333
tibial_nerve_female_adult_51_years	chr6	125219965	125219966	125219965	+	High_confidence	8	8	10	0.857270	3.121928	chr6	125219459	125220024	LINE|L1|L1ME3E	-	chr6	125219844	125263148	TPD52L1|ENST00000524679.1	+	125219844,125229117,125248281,125262833	125220193,125229266,125248383,125263148	1.000000
tibial_nerve_female_adult_51_years	chr14	68882879	68882956	68882879	-	High_confidence	9	10	55	4.714987	4.641203	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.909091
tibial_nerve_female_adult_51_years	chr6	77369106	77369167	77369166	-	RAMPAGE_only	26	33	103	8.829884	5.496740	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77151119	77273309	STRG.57560.1	-	77151119,77151818,77271339,77273026	77151280,77151974,77271493,77273309	0.504854
tibial_nerve_female_adult_51_years	chr7	37353636	37353646	37353636	-	High_confidence	24	24	38	3.257627	4.083738	chr7	37353223	37353900	LTR|ERV1|LTR12_	-	chr7	36852905	37353668	ELMO1|NM_001206482.1	-	36852905,36861658,36870392,36878009,36887559,36894853,37013298,37096618,37133129,37211385,37213334,37216644,37222614,37224878,37233094,37244355,37259180,37271831,37314849,37315919,37342612,37353031	36855751,36861736,36870475,36878117,36887672,36895017,37013435,37096727,37133234,37211517,37213457,37216695,37222693,37225030,37233194,37244391,37259350,37271882,37314922,37315960,37342763,37353668	0.947368
tibial_nerve_female_adult_51_years	chr11	65442731	65442746	65442745	+	RAMPAGE_only	2	2	7	0.600089	2.584963	chr11	65442603	65442894	SINE|Alu|AluSx4	+	chr11	65423637	65445540	STRG.94435.5	+	65423637,65437252	65437175,65445540	0.857143
tibial_nerve_female_adult_51_years	chr1	227758573	227758625	227758603	+	RAMPAGE_only	12	12	52	4.457806	4.973661	chr1	227758567	227758649	DNA|hAT-Charlie|MER3	-	chr1	227748153	227770744	SNAP47|ENST00000478768.2	+	227748153,227758994,227766958,227770570	227748233,227759485,227767083,227770744	0.846154
tibial_nerve_female_adult_51_years	chr3	45034830	45034841	45034840	+	RAMPAGE_only	4	7	15	1.285905	2.923231	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	1.000000
tibial_nerve_female_adult_51_years	chr7	11194708	11194721	11194708	+	RAMPAGE_only	21	30	48	4.114898	4.468633	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.770833
tibial_nerve_female_adult_51_years	chr16	66408519	66408564	66408530	+	High_confidence	5	8	18	1.543087	3.734522	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.888889
tibial_nerve_female_adult_51_years	chr1	33021446	33021455	33021454	-	RAMPAGE_only	7	8	12	1.028724	3.095795	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.916667
tibial_nerve_female_adult_51_years	chr3	52615443	52615444	52615443	-	High_confidence	5	5	7	0.600089	2.807355	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.714286
tibial_nerve_female_adult_51_years	chr4	79492585	79492596	79492585	+	High_confidence	7	7	17	1.457360	2.851019	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492587	79513888	STRG.39101.1	+	79492587,79493151,79513784	79492623,79493585,79513888	0.882353
tibial_nerve_female_adult_51_years	chr15	93863065	93863066	93863065	+	High_confidence	4	4	7	0.600089	2.807355	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.571429
tibial_nerve_female_adult_51_years	chr7	125564242	125564268	125564260	+	High_confidence	32	35	95	8.144068	4.988703	chr7	125563548	125564348	LTR|ERV1|LTR1A1	+	chr7	125564375	125564821	STRG.70212.1	+	125564375	125564821	0.905263
tibial_nerve_female_adult_51_years	chr19	52616791	52616802	52616791	-	RAMPAGE_only	4	4	11	0.942997	2.921928	chr19	52616561	52616863	SINE|Alu|AluSp	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	0.909091
tibial_nerve_female_adult_51_years	chr22	42721166	42721167	42721166	-	High_confidence	9	9	10	0.857270	2.503258	chr22	42721115	42721232	SINE|MIR|MIRb	-	chr22	42692114	42721301	A4GALT|NM_001318038.1	-	42692114,42695490,42721164	42693997,42695631,42721301	0.900000
tibial_nerve_female_adult_51_years	chr20	3912584	3912632	3912631	+	High_confidence	4	4	9	0.771543	2.503258	chr20	3912669	3912954	SINE|Alu|AluSg	+	chr20	3913126	3917486	STRG.136936.6	+	3913126,3916926	3913438,3917486	0.666667
tibial_nerve_female_adult_51_years	chr2	38083060	38083082	38083060	+	High_confidence	5	5	16	1.371633	3.155639	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.937500
tibial_nerve_female_adult_51_years	chr5	170267210	170267414	170267390	-	High_confidence	32	36	321	27.518377	6.588349	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170256556	170267327	LCP2|ENST00000520344.1	-	170256556,170258036,170258865,170261106,170262634,170262841,170262966,170267008	170256575,170258166,170258878,170261137,170262742,170262861,170262992,170267327	0.707165
tibial_nerve_female_adult_51_years	chr7	111413967	111414006	111413976	-	High_confidence	20	21	80	6.858163	5.423859	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	111411162	111414497	STRG.69681.1	-	111411162	111414497	0.575000
tibial_nerve_female_adult_51_years	chr9	92536601	92536652	92536601	-	High_confidence	15	16	26	2.228903	4.286790	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.884615
tibial_nerve_female_adult_51_years	chr13	80902515	80902529	80902515	+	High_confidence	3	3	11	0.942997	2.732159	chr13	80902413	80902743	SINE|Alu|AluJb	-	chr13	80901922	81009906	STRG.109410.4	+	80901922,80902430,80909202,81008056	80901963,80902558,80909300,81009906	0.545455
tibial_nerve_female_adult_51_years	chr4	101669374	101669380	101669374	+	RAMPAGE_only	3	3	8	0.685816	2.750000	chr4	101669401	101672686	LTR|ERV1|MER57-int	+	chr4	101790606	102074810	BANK1|ENST00000428908.5	+	101790606,101855034,101862525,101870504,101895304,101917992,102021513,102025200,102029959,102043838,102060210,102063074,102071274,102072344,102073683,102074004	101790950,101855189,101862664,101870644,101895410,101918189,102021592,102025509,102030265,102043907,102060389,102063138,102071304,102072400,102073748,102074810	0.500000
tibial_nerve_female_adult_51_years	chr5	42813788	42813828	42813827	+	High_confidence	4	4	16	1.371633	3.323231	chr5	42813649	42814032	LTR|ERV1|Harlequin-int	+	chr5	42813383	42959903	STRG.46529.1	+	42813383,42891306,42922737,42959381	42813919,42891443,42922873,42959903	0.500000
tibial_nerve_female_adult_51_years	chr8	11795578	11795579	11795578	+	High_confidence	82	82	84	7.201071	4.542336	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.976190
tibial_nerve_female_adult_51_years	chr4	101669331	101669348	101669331	+	RAMPAGE_only	6	7	14	1.200178	3.180833	chr4	101669002	101669401	LTR|ERV1|MER57B1	+	chr4	101689460	101754057	STRG.40298.1	+	101689460,101690264,101754032	101689533,101690370,101754057	0.571429
tibial_nerve_female_adult_51_years	chr1	1655395	1655410	1655409	-	RAMPAGE_only	21	22	47	4.029171	4.865635	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.617021
tibial_nerve_female_adult_51_years	chr7	7537207	7537234	7537207	-	RAMPAGE_only	2	2	9	0.771543	2.750000	chr7	7536885	7537476	DNA|TcMar-Tigger|MER6A	-	chr7	7357874	7535853	COL28A1|ENST00000399429.7	-	7357874,7360389,7370724,7372997,7375460,7380659,7380781,7381543,7417858,7419884,7432472,7432631,7436394,7437393,7440789,7443584,7444417,7452318,7453439,7456043,7474600,7477111,7489388,7490577,7506013,7507116,7511090,7515813,7517795,7520061,7521904,7524228,7531347,7532751,7535749	7358805,7360528,7370882,7373546,7375497,7380695,7380862,7381612,7417927,7419953,7432541,7432700,7436463,7437462,7440861,7443653,7444489,7452387,7453508,7456112,7474669,7477180,7489457,7490646,7506067,7507161,7511135,7515840,7517837,7520115,7521961,7524249,7531904,7532912,7535853	0.888889
tibial_nerve_female_adult_51_years	chr20	35732309	35732359	35732358	-	High_confidence	6	6	21	1.800268	2.688773	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	1.000000
tibial_nerve_female_adult_51_years	chr11	114185060	114185248	114185087	+	RAMPAGE_only	22	22	170	14.573595	4.796700	chr11	114184889	114185232	SINE|Alu|AluJo	+	chr11	114059724	114247296	STRG.97876.6	+	114059724,114063210,114156336,114242166,114247197	114059882,114064568,114187038,114242337,114247296	0.994118
tibial_nerve_female_adult_51_years	chr10	45000453	45000515	45000514	+	High_confidence	11	18	58	4.972168	4.981200	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.913793
tibial_nerve_female_adult_51_years	chr19	40772059	40772060	40772059	+	RAMPAGE_only	38	38	38	3.257627	4.123479	chr19	40771932	40772225	SINE|Alu|AluJo	-	chr19	40775176	40777493	MIA|NM_001202553.1	+	40775176,40775536,40775751,40776968,40777396	40775211,40775669,40775885,40777079,40777493	0.947368
tibial_nerve_female_adult_51_years	chr2	94205787	94205808	94205787	-	RAMPAGE_only	4	4	15	1.285905	3.378783	chr2	94205319	94206820	LINE|L1|L1MDa	+	chr2	94190563	94208693	STRG.17719.1	-	94190563,94199450,94202396,94203213,94208309	94199366,94199639,94202568,94203287,94208693	0.933333
tibial_nerve_female_adult_51_years	chr15	80059915	80059933	80059918	+	High_confidence	15	15	44	3.771989	4.451147	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	1.000000
tibial_nerve_female_adult_51_years	chr7	134527596	134527597	134527596	+	High_confidence	67	72	89	7.629706	5.193000	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.932584
tibial_nerve_female_adult_51_years	chr2	3536480	3536516	3536515	-	High_confidence	8	10	17	1.457360	3.202820	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.705882
tibial_nerve_female_adult_51_years	chr20	50267474	50267502	50267477	+	High_confidence	5	5	16	1.371633	3.240224	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.937500
tibial_nerve_female_adult_51_years	chr5	42813740	42813763	42813740	+	High_confidence	4	4	15	1.285905	3.093069	chr5	42813649	42814032	LTR|ERV1|Harlequin-int	+	chr5	42813383	42959903	STRG.46529.1	+	42813383,42891306,42922737,42959381	42813919,42891443,42922873,42959903	0.666667
tibial_nerve_female_adult_51_years	chr2	219605510	219605546	219605510	+	High_confidence	2	2	8	0.685816	2.750000	chr2	219605506	219605588	LTR|ERV1|MER67A	-	chr2	219605506	219606633	STK11IP|ENST00000465230.5	+	219605506,219605955,219606194	219605734,219606059,219606633	0.500000
tibial_nerve_female_adult_51_years	chr17	19386333	19386360	19386333	-	High_confidence	8	8	16	1.371633	3.240224	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.937500
tibial_nerve_female_adult_51_years	chr4	119268059	119268115	119268069	+	High_confidence	4	4	22	1.885995	3.558519	chr4	119267885	119268193	SINE|Alu|AluYb8	+	chr4	119267380	119273330	USP53|ENST00000510852.1	+	119267380,119268267,119269690,119271295	119267482,119268420,119269837,119273330	0.954545
tibial_nerve_female_adult_51_years	chr17	13931151	13931183	13931161	-	RAMPAGE_only	4	4	16	1.371633	3.280639	chr17	13931030	13931624	LTR|ERVL-MaLR|MLT1L	+	chr17	13776831	13892839	COX10-AS1|ENST00000577798.6	-	13776831,13790268,13865078,13880301,13892724	13777349,13790313,13865266,13880371,13892839	0.750000
tibial_nerve_female_adult_51_years	chr10	99843660	99843696	99843695	+	High_confidence	13	18	66	5.657984	5.077997	chr10	99843635	99843721	LINE|L2|L2a	+	chr10	99843709	99850713	ABCC2|ENST00000649459.1	+	99843709,99844321,99845623,99846960,99850601	99843900,99844465,99845782,99847127,99850713	0.621212
tibial_nerve_female_adult_51_years	chr3	134485387	134485388	134485387	-	High_confidence	7	7	10	0.857270	2.947703	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.900000
tibial_nerve_female_adult_51_years	chr6	79631294	79631329	79631302	+	High_confidence	44	44	141	12.087512	5.902829	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.964539
tibial_nerve_female_adult_51_years	chr14	27673171	27673240	27673239	-	High_confidence	10	10	34	2.914719	4.113609	chr14	27673059	27679095	LINE|L1|L1PA3	+	chr14	27321921	27673221	AL390334.1|ENST00000556890.1	-	27321921,27656337,27673028	27322141,27656502,27673221	0.764706
tibial_nerve_female_adult_51_years	chr2	3706824	3706910	3706824	+	RAMPAGE_only	9	9	27	2.314630	3.578056	chr2	3706780	3706996	SINE|MIR|MIRb	+	chr2	3703609	3754939	STRG.13008.1	+	3703609,3708548,3741919,3752762,3754591	3704038,3708600,3742048,3752900,3754939	0.592593
tibial_nerve_female_adult_51_years	chr2	113625623	113625651	113625623	-	RAMPAGE_only	3	3	14	1.200178	2.815072	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	0.928571
tibial_nerve_female_adult_51_years	chr2	232816731	232816761	232816751	+	RAMPAGE_only	4	5	16	1.371633	3.577820	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.812500
tibial_nerve_female_adult_51_years	chr9	129489067	129489126	129489125	+	High_confidence	7	10	31	2.657538	4.389365	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.806452
tibial_nerve_female_adult_51_years	chr17	47067487	47067513	47067498	-	High_confidence	118	132	501	42.949243	6.004214	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.950100
tibial_nerve_female_adult_51_years	chr5	54310448	54310473	54310472	-	High_confidence	3	3	9	0.771543	2.750000	chr5	54310446	54310538	DNA|TcMar-Tigger|Tigger15a	+	chr5	53886444	54310415	ARL15|ENST00000510591.6	-	53886444,54113201,54154579,54171783,54310294	53886713,54113410,54154639,54171928,54310415	0.666667
tibial_nerve_female_adult_51_years	chr2	3536822	3536873	3536822	-	High_confidence	4	4	38	3.257627	4.405765	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3533223	3536869	AC108488.1|ENST00000438482.1	-	3533223,3534112,3536723	3533848,3534255,3536869	0.631579
tibial_nerve_female_adult_51_years	chr11	3380960	3380961	3380960	+	High_confidence	9	9	10	0.857270	2.641604	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.600000
tibial_nerve_female_adult_51_years	chr17	35367000	35367030	35367029	-	High_confidence	8	8	13	1.114451	3.026987	chr17	35366789	35367087	SINE|Alu|AluJb	+	chr17	35363621	35367294	SLFN11|ENST00000589562.1	-	35363621,35366946	35363826,35367294	0.769231
tibial_nerve_female_adult_51_years	chr3	16228559	16228595	16228594	+	RAMPAGE_only	15	16	54	4.629260	3.875558	chr3	16228359	16228663	SINE|Alu|AluSx	+	chr3	16219399	16229745	GALNT15|ENST00000617544.3	+	16219399,16219909,16222614,16227353,16227444	16219534,16220014,16222758,16227443,16229745	0.962963
tibial_nerve_female_adult_51_years	chr14	64453850	64453851	64453850	+	RAMPAGE_only	4	4	7	0.600089	2.584963	chr14	64453898	64454014	SINE|MIR|MIR3	+	chr14	64457996	64460003	MTHFD1|ENST00000554353.1	+	64457996,64459758	64458307,64460003	0.714286
tibial_nerve_female_adult_51_years	chr9	125337326	125337361	125337360	+	RAMPAGE_only	6	6	11	0.942997	2.663533	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125335388	125342106	STRG.84054.10	+	125335388,125337220,125341176,125341751	125337095,125337591,125341264,125342106	0.909091
tibial_nerve_female_adult_51_years	chr12	131000412	131000431	131000412	+	RAMPAGE_only	2	2	9	0.771543	2.503258	chr12	131000459	131000769	SINE|Alu|AluSx1	+	chr12	131002498	131141460	ADGRD1|ENST00000376682.8	+	131002498,131003184,131004185,131005971,131014198,131076800,131084539,131104830,131105753,131108723,131118384,131120846,131131724,131136036,131136972,131138136,131139167	131002837,131003302,131004296,131006047,131014340,131076874,131084663,131104934,131105865,131108877,131118451,131120913,131131816,131136163,131137014,131138229,131141460	1.000000
tibial_nerve_female_adult_51_years	chr7	30563894	30563899	30563894	-	RAMPAGE_only	2	2	6	0.514362	2.584963	chr7	30563654	30564076	LTR|ERVL-MaLR|MLT1C	-	chr7	30561561	30594760	STRG.65345.7	-	30561561,30576563,30577648,30579230,30585329,30594710	30574881,30576710,30579128,30579314,30585479,30594760	0.500000
tibial_nerve_female_adult_51_years	chr18	7946878	7946898	7946878	+	High_confidence	12	12	33	2.828992	4.331977	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.878788
tibial_nerve_female_adult_51_years	chr21	46600319	46600334	46600319	-	RAMPAGE_only	3	3	9	0.771543	2.500000	chr21	46600259	46600567	SINE|Alu|AluJb	+	chr21	46599280	46602893	S100B|ENST00000397648.1	-	46599280,46602277	46599503,46602893	0.777778
tibial_nerve_female_adult_51_years	chr7	48525976	48526015	48525999	+	High_confidence	7	10	30	2.571811	4.254196	chr7	48525740	48526007	LINE|L1|L1PA10	-	chr7	48525985	48647773	STRG.66369.1	+	48525985,48528235,48580223,48587153,48594709,48615284,48643287,48644616,48645416	48526075,48528345,48580374,48587288,48594813,48615377,48643393,48644754,48647773	0.900000
tibial_nerve_female_adult_51_years	chrX	11351666	11351676	11351675	-	High_confidence	20	20	34	2.914719	4.515320	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11138821	11352253	STRG.144530.4	-	11138821,11142232,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11351385	11139530,11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11352253	0.647059
tibial_nerve_female_adult_51_years	chr11	123060124	123060256	123060135	-	High_confidence	18	18	134	11.487422	4.944611	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	0.992537
tibial_nerve_female_adult_51_years	chr22	23705502	23705531	23705502	-	RAMPAGE_only	3	3	13	1.114451	3.238901	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23658389	23701078	STRG.142253.5	-	23658389,23683724,23686837,23690235,23694118,23700725	23660000,23683867,23686995,23690356,23695517,23701078	1.000000
tibial_nerve_female_adult_51_years	chr13	81020603	81020622	81020603	+	RAMPAGE_only	5	5	14	1.200178	3.182006	chr13	81020592	81021344	LINE|L1|L1PA15-16	+	chr13	81018390	81044442	LINC00377|NR_125770.1	+	81018390,81020605,81043670,81043966	81018460,81020806,81043850,81044442	0.785714
tibial_nerve_female_adult_51_years	chr7	101217578	101217595	101217587	-	High_confidence	4	4	19	1.628814	3.366091	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
tibial_nerve_female_adult_51_years	chr10	19768195	19768257	19768195	+	RAMPAGE_only	29	33	141	12.087512	6.087474	chr10	19768143	19768495	LTR|ERV1|LTR23	+	chr10	19816238	20289856	PLXDC2|ENST00000377252.4	+	19816238,20001774,20046868,20068169,20143294,20147783,20164467,20176998,20177327,20211668,20217425,20219063,20245344,20279702	19817191,20001986,20047015,20068239,20143417,20147902,20164567,20177094,20177409,20211729,20217576,20219102,20245505,20289856	0.787234
tibial_nerve_female_adult_51_years	chr7	107580245	107580267	107580245	+	High_confidence	308	309	1425	122.161021	6.934867	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.952281
tibial_nerve_female_adult_51_years	chr6	158631135	158631174	158631146	+	RAMPAGE_only	5	5	20	1.714541	4.121928	chr6	158631108	158631267	SINE|MIR|MIRc	-	chr6	158560079	158635428	STRG.62109.2	+	158560079,158573419,158580939,158583953,158585303,158589671,158605266,158607243,158608332,158608658,158623549,158625103,158625702,158628407,158629729,158631322,158631809	158560232,158573523,158580995,158584044,158585425,158589782,158605347,158607343,158608463,158608750,158623607,158625206,158625754,158628490,158629819,158631389,158635428	0.800000
tibial_nerve_female_adult_51_years	chr22	36158724	36158737	36158736	+	High_confidence	11	11	30	2.571811	4.487123	chr22	36158538	36158824	SINE|Alu|AluSc8	+	chr22	36158741	36189026	STRG.143047.1	+	36158741,36188397	36158912,36189026	0.533333
tibial_nerve_female_adult_51_years	chr19	48868595	48868614	48868595	-	High_confidence	2921	3097	8675	743.682003	7.558300	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.994352
tibial_nerve_female_adult_51_years	chr1	40042734	40042770	40042769	+	RAMPAGE_only	6	6	22	1.885995	3.172811	chr1	40042259	40043053	LINE|L2|L2c	-	chr1	40040779	40066295	CAP1|ENST00000424977.1	+	40040779,40041428,40059336,40060066,40061734,40064226,40064473,40066214	40040801,40041493,40059458,40060170,40061812,40064370,40064559,40066295	0.818182
tibial_nerve_female_adult_51_years	chr8	114285476	114285494	114285489	-	High_confidence	8	15	40	3.429081	4.701944	chr8	114285382	114285530	LTR|ERV1|HERVH-int	+	chr8	114284873	114285307	STRG.76751.1	-	114284873	114285307	0.775000
tibial_nerve_female_adult_51_years	chr9	128921399	128921411	128921399	+	High_confidence	23	23	37	3.171900	3.826466	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.972973
tibial_nerve_female_adult_51_years	chr17	69196781	69196814	69196799	-	RAMPAGE_only	2	2	9	0.771543	2.750000	chr17	69195559	69197005	Retroposon|SVA|SVA_B	-	chr17	69148744	69225442	STRG.129161.45	-	69148744,69149032,69149983,69152042,69152361,69153304,69153830,69154234,69155018,69155804,69156831,69164073,69164963,69174280,69174606,69175405,69182152,69182674,69185476,69187680,69190357,69191175,69192562,69193109,69193492,69193813,69194384,69197063,69201499,69214703,69215814,69216216,69219544,69221791,69222532,69225324	69148925,69149088,69150063,69152183,69152481,69153546,69154009,69154326,69155136,69155925,69156923,69164154,69165083,69174394,69174777,69175513,69182290,69182808,69185643,69187879,69190477,69191315,69192653,69193248,69193612,69193989,69196663,69197122,69201668,69214851,69216000,69216358,69219771,69221895,69222697,69225442	0.888889
tibial_nerve_female_adult_51_years	chr4	152412488	152412529	152412528	-	High_confidence	8	8	21	1.800268	3.916127	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
tibial_nerve_female_adult_51_years	chr8	97931047	97931071	97931047	+	High_confidence	4	4	10	0.857270	2.725481	chr8	97931029	97931087	LINE|RTE-BovB|MamRTE1	+	chr8	97931340	98036214	MATN2|ENST00000518154.5	+	97931340,97941776,97978885,97994479,98003660,98007104,98007478,98016539,98017993,98021204,98027415,98030461,98032245,98033098,98033560,98035656	97931522,97941899,97979008,97994602,98003783,98007227,98007601,98016662,98018116,98021327,98027829,98030614,98032317,98033176,98033659,98036214	0.800000
tibial_nerve_female_adult_51_years	chr17	15475732	15475733	15475732	-	High_confidence	21	21	30	2.571811	3.702472	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15437858	15475728	CDRT4|ENST00000520956.2	-	15437858,15475600	15438200,15475728	0.766667
tibial_nerve_female_adult_51_years	chr1	238486024	238486043	238486036	-	High_confidence	13	36	97	8.315522	5.483884	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.690722
tibial_nerve_female_adult_51_years	chr14	100834607	100834682	100834619	+	High_confidence	11	11	42	3.600535	4.272804	chr14	100834648	100834738	LINE|L2|L2b	+	chr14	100833763	100861021	MEG3|ENST00000524035.5	+	100833763,100836166,100845457,100860690	100836075,100836300,100845533,100861021	1.000000
tibial_nerve_female_adult_51_years	chr12	8788252	8788253	8788252	+	High_confidence	10	10	13	1.114451	2.873141	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	1.000000
tibial_nerve_female_adult_51_years	chr12	26832795	26832838	26832795	-	High_confidence	6	6	21	1.800268	3.681881	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26716161	26832786	ITPR2|ENST00000545235.1	-	26716161,26722396,26724655,26725649,26832689	26716242,26722555,26724742,26725765,26832786	0.904762
tibial_nerve_female_adult_51_years	chr15	58851957	58851958	58851957	+	RAMPAGE_only	7	7	8	0.685816	2.521641	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	0.875000
tibial_nerve_female_adult_51_years	chr12	9965312	9965321	9965320	+	RAMPAGE_only	46	46	92	7.886887	5.636080	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.641304
tibial_nerve_female_adult_51_years	chr12	109179125	109179282	109179281	+	RAMPAGE_only	19	19	80	6.858163	4.875796	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109175976	109266555	STRG.105814.3	+	109175976,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260479,109262356,109264231,109265109,109265388,109266235	109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260657,109262469,109264386,109265280,109265525,109266555	0.937500
tibial_nerve_female_adult_51_years	chr15	70753181	70753182	70753181	-	RAMPAGE_only	14	14	16	1.371633	3.452820	chr15	70753130	70753317	LINE|L1|L1M5	+	chr15	70656976	70763430	UACA|ENST00000539319.5	-	70656976,70660150,70664661,70666723,70671038,70671964,70676492,70677107,70678098,70679607,70687749,70690453,70691298,70695016,70699526,70763329	70657127,70660216,70664814,70669462,70671091,70672001,70676591,70677140,70678206,70679676,70687820,70690511,70691363,70695105,70699660,70763430	0.562500
tibial_nerve_female_adult_51_years	chr7	7519213	7519214	7519213	-	High_confidence	7	7	10	0.857270	2.947703	chr7	7519045	7519413	LTR|ERVL-MaLR|THE1B	-	chr7	7417631	7520073	COL28A1|ENST00000444268.1	-	7417631,7419884,7432472,7432631,7436394,7437393,7440789,7443584,7444417,7452318,7453439,7456043,7474600,7477111,7489388,7490577,7506013,7507116,7511090,7511651,7515813,7517795,7520061	7417927,7419953,7432541,7432700,7436463,7437462,7440861,7443653,7444489,7452387,7453508,7456112,7474669,7477180,7489457,7490646,7506067,7507161,7511135,7511844,7515840,7517837,7520073	0.900000
tibial_nerve_female_adult_51_years	chr1	46804462	46804478	46804477	+	RAMPAGE_only	11	12	31	2.657538	4.256565	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.709677
tibial_nerve_female_adult_51_years	chr10	133369969	133370029	133370028	-	RAMPAGE_only	3	3	12	1.028724	2.918296	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
tibial_nerve_female_adult_51_years	chr6	130894363	130894379	130894363	-	RAMPAGE_only	12	12	22	1.885995	3.884184	chr6	130894202	130894318	SINE|Alu|FLAM_A	-	chr6	130869658	130890424	EPB41L2|ENST00000456097.6	-	130869658,130870327,130876673,130878103,130880143,130885095,130890293	130870126,130870381,130876775,130878250,130880206,130885268,130890424	0.772727
tibial_nerve_female_adult_51_years	chr8	2727222	2727254	2727222	+	High_confidence	2	2	12	1.028724	3.459432	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.833333
tibial_nerve_female_adult_51_years	chr3	195688578	195688612	195688611	+	High_confidence	4	4	13	1.114451	2.931209	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688650	195708777	MUC20-OT1|ENST00000630863.2	+	195688650,195689338,195689545,195708133	195688797,195689438,195689608,195708777	0.692308
tibial_nerve_female_adult_51_years	chr5	172854659	172854699	172854698	+	RAMPAGE_only	3	4	9	0.771543	2.750000	chr5	172854401	172854991	DNA|TcMar-Tigger|MER6A	+	chr5	172834274	172952685	ERGIC1|ENST00000393784.7	+	172834274,172888698,172897001,172909666,172914713,172924004,172926508,172932435,172935187,172950708	172834433,172888760,172897074,172909761,172914838,172924109,172926569,172932536,172935310,172952685	0.666667
tibial_nerve_female_adult_51_years	chr11	65431854	65432017	65432016	+	RAMPAGE_only	11	11	56	4.800714	4.896292	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65423637	65433586	STRG.94435.6	+	65423637,65430307	65430233,65433586	1.000000
tibial_nerve_female_adult_51_years	chr19	9140393	9140422	9140393	+	High_confidence	11	11	41	3.514808	4.668170	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.780488
tibial_nerve_female_adult_51_years	chr1	166850227	166850243	166850234	+	RAMPAGE_only	4	4	12	1.028724	3.418296	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
tibial_nerve_female_adult_51_years	chr6	127330880	127330929	127330917	-	High_confidence	7	8	28	2.400357	3.671406	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.892857
tibial_nerve_female_adult_51_years	chr11	45888360	45888399	45888360	+	RAMPAGE_only	2	2	13	1.114451	2.855389	chr11	45888286	45888466	SINE|MIR|MIR	-	chr11	45885650	45906465	MAPK8IP1|ENST00000241014.6	+	45885650,45898084,45900137,45901979,45902371,45903364,45903988,45904454,45904717,45904970,45905150,45905648	45885921,45898190,45900452,45902061,45903184,45903440,45904161,45904564,45904834,45905041,45905249,45906465	0.769231
tibial_nerve_female_adult_51_years	chr16	68267936	68267937	68267936	+	RAMPAGE_only	18	19	21	1.800268	3.975418	chr16	68267617	68268452	LTR|ERVL|MER21B	+	chr16	68266601	68294801	STRG.123922.3	+	68266601,68273817,68274690,68287322,68290395,68291557,68294704	68266721,68273904,68275249,68287871,68291332,68291661,68294801	0.666667
tibial_nerve_female_adult_51_years	chr18	9588145	9588181	9588145	-	RAMPAGE_only	3	3	16	1.371633	3.077820	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9577063	9595061	PPP4R1|ENST00000580583.5	-	9577063,9584514,9584720,9588088,9588710,9593767,9595017	9577191,9584580,9584828,9588235,9588853,9593874,9595061	0.562500
tibial_nerve_female_adult_51_years	chr21	46256892	46256893	46256892	-	High_confidence	5	5	8	0.685816	3.000000	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	1.000000
tibial_nerve_female_adult_51_years	chr14	100569559	100569583	100569561	-	High_confidence	4	9	21	1.800268	3.511085	chr14	100569527	100569624	LINE|L2|L2b	+	chr14	100538887	100569558	BEGAIN|ENST00000556188.5	-	100538887,100540495,100543857,100544999,100546500,100567910,100569426	100539315,100540579,100543965,100545066,100546662,100567939,100569558	0.714286
tibial_nerve_female_adult_51_years	chr19	3062917	3062939	3062924	-	High_confidence	9	17	48	4.114898	4.813722	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	1.000000
tibial_nerve_female_adult_51_years	chr8	2726962	2726963	2726962	+	High_confidence	14	14	21	1.800268	3.499228	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727085	2804669	STRG.72106.1	+	2727085,2804585	2727493,2804669	0.952381
tibial_nerve_female_adult_51_years	chr10	89888929	89888962	89888929	+	RAMPAGE_only	5	7	15	1.285905	3.324863	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.666667
tibial_nerve_female_adult_51_years	chr4	141332616	141332617	141332616	-	High_confidence	165	171	183	15.688047	4.822926	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.978142
tibial_nerve_female_adult_51_years	chr19	11196112	11196213	11196126	-	High_confidence	25	25	190	16.288136	5.524579	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.931579
tibial_nerve_female_adult_51_years	chr7	87040212	87040223	87040212	-	High_confidence	8	8	22	1.885995	3.879664	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.500000
tibial_nerve_female_adult_51_years	chr1	166850306	166850330	166850329	+	RAMPAGE_only	4	4	11	0.942997	3.121928	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.909091
tibial_nerve_female_adult_51_years	chr5	108768090	108768091	108768090	+	RAMPAGE_only	4	4	7	0.600089	2.521641	chr5	108768042	108768250	LINE|CR1|L3b	-	chr5	108748966	108843001	FER|ENST00000502752.1	+	108748966,108768092,108782662,108798123,108832769,108835707,108841830,108842261	108748993,108768238,108782755,108798389,108832943,108835807,108841868,108843001	1.000000
tibial_nerve_female_adult_51_years	chr21	28090339	28090410	28090409	+	High_confidence	5	5	25	2.143176	3.843856	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	1.000000
tibial_nerve_female_adult_51_years	chr12	53464825	53464834	53464833	+	RAMPAGE_only	6	7	12	1.028724	3.084963	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.833333
tibial_nerve_female_adult_51_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	11	11	14	1.200178	3.238901	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.642857
tibial_nerve_female_adult_51_years	chr2	229232040	229232054	229232042	-	High_confidence	17	29	59	5.057895	5.478671	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.644068
tibial_nerve_female_adult_51_years	chr20	34132091	34132123	34132114	+	High_confidence	4	4	26	2.228903	3.970176	chr20	34131810	34133679	Retroposon|SVA|SVA_D	+	chr20	34131882	34136365	STRG.138518.1	+	34131882,34135500	34132547,34136365	0.923077
tibial_nerve_female_adult_51_years	chr7	154928503	154928504	154928503	+	High_confidence	49	49	71	6.086619	5.450572	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.929577
tibial_nerve_female_adult_51_years	chr1	168137432	168137500	168137432	-	High_confidence	3	3	15	1.285905	3.106891	chr1	168137391	168137473	LINE|L2|L2b	-	chr1	168085277	168137583	GPR161|ENST00000367835.1	-	168085277,168087584,168090563,168096507,168104476,168114455,168137164	168085796,168087704,168090668,168097232,168104894,168114549,168137583	1.000000
tibial_nerve_female_adult_51_years	chr4	158173024	158173025	158173024	-	High_confidence	31	34	39	3.343354	4.721300	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158130785	158173027	STRG.43396.4	-	158130785,158155610,158170465,158172872	158131012,158155825,158171489,158173027	0.615385
tibial_nerve_female_adult_51_years	chr15	81209979	81210012	81209979	+	RAMPAGE_only	2	3	11	0.942997	2.721928	chr15	81209880	81211048	LINE|L1|L1P4a	-	chr15	81196878	81314058	IL16|ENST00000394660.6	+	81196878,81225298,81259771,81265658,81269537,81273089,81278816,81279557,81282638,81285697,81290452,81292555,81296927,81299379,81301343,81303548,81305907,81306422,81308604	81197137,81225711,81259880,81265801,81269648,81273204,81278890,81279774,81282756,81285830,81290540,81293037,81297078,81300475,81301512,81303650,81306166,81306545,81314058	0.636364
tibial_nerve_female_adult_51_years	chr2	240033437	240033481	240033471	-	High_confidence	29	32	57	4.886441	4.720889	chr2	240033344	240033532	LINE|L2|L2a	+	chr2	240029063	240033458	STRG.25177.1	-	240029063,240032892	240030454,240033458	0.807018
tibial_nerve_female_adult_51_years	chr19	53865343	53865346	53865343	+	High_confidence	6	6	14	1.200178	2.985228	chr19	53865313	53865624	SINE|Alu|AluSx	-	chr19	53865583	53876435	MYADM|NM_001290193.1	+	53865583,53869753,53873527	53865728,53869838,53876435	0.642857
tibial_nerve_female_adult_51_years	chr13	35858064	35858065	35858064	+	High_confidence	463	469	553	47.407049	7.645625	chr13	35857905	35858332	LINE|L2|L2	-	chr13	35858007	35907584	STRG.107364.1	+	35858007,35896626,35897261,35901652	35858146,35896749,35897414,35907584	0.602170
tibial_nerve_female_adult_51_years	chrX	56808017	56808039	56808017	+	RAMPAGE_only	3	3	10	0.857270	2.947703	chrX	56805824	56812210	LINE|L1|L1PA7	-	chrX	56810779	56817620	STRG.146126.3	+	56810779,56817319	56811179,56817620	0.900000
tibial_nerve_female_adult_51_years	chr2	37928733	37928734	37928733	+	High_confidence	4	4	7	0.600089	2.807355	chr2	37928485	37928833	LINE|L2|L2	+	chr2	37928758	38017744	RMDN2|ENST00000406384.5	+	37928758,37929261,37974039,37975211,37981282,37989540,37991219,37997415,38003990,38004135,38017185	37928936,37929729,37974214,37975314,37981343,37989616,37991297,37997514,38004044,38004216,38017744	1.000000
tibial_nerve_female_adult_51_years	chr11	61949811	61949821	61949820	+	High_confidence	7	7	13	1.114451	3.238901	chr11	61949804	61949945	SINE|MIR|MIR3	-	chr11	61949820	61964461	BEST1|ENST00000378043.8	+	61949820,61951770,61955106,61955717,61956843,61957386,61958145,61959497,61959891,61962254,61964103	61950427,61951958,61955201,61955951,61956998,61957464,61958298,61959578,61960043,61962893,61964461	1.000000
tibial_nerve_female_adult_51_years	chr12	122274041	122274088	122274041	-	RAMPAGE_only	5	6	17	1.457360	3.327820	chr12	122273741	122274010	SINE|Alu|AluSz	-	chr12	122272460	122275823	CLIP1|ENST00000501271.2	-	122272460,122274037	122273100,122275823	0.941176
tibial_nerve_female_adult_51_years	chr19	3047779	3047812	3047811	-	High_confidence	9	10	17	1.457360	3.454822	chr19	3047758	3047946	LINE|L2|L2a	+	chr19	2997637	3047635	TLE2|NM_001144761.1	-	2997637,3002352,3005436,3005720,3006419,3008868,3009541,3011021,3013668,3014569,3015652,3017839,3019282,3019698,3025019,3027828,3028318,3028705,3045725,3047562	2997955,3002503,3005584,3005968,3006669,3008945,3009702,3011160,3013818,3014614,3015760,3017859,3019466,3019773,3025082,3027873,3028382,3028803,3045799,3047635	0.705882
tibial_nerve_female_adult_51_years	chr18	66670107	66670144	66670121	-	RAMPAGE_only	7	7	30	2.571811	3.694740	chr18	66669951	66670217	LINE|L2|L2	+	chr18	66501186	66604138	CDH19|NR_073130.1	-	66501186,66508994,66511567,66529844,66534985,66543970,66544718,66551093,66554404,66568415,66572009,66603953	66505302,66509218,66511685,66529966,66535107,66544224,66544903,66551258,66554524,66568710,66572316,66604138	0.833333
tibial_nerve_female_adult_51_years	chrX	11351742	11351746	11351742	-	High_confidence	13	13	20	1.714541	3.008695	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11138821	11352253	STRG.144530.4	-	11138821,11142232,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11351385	11139530,11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11352253	0.700000
tibial_nerve_female_adult_51_years	chr1	174874429	174874439	174874429	+	High_confidence	4	4	10	0.857270	3.121928	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874457	174958182	RABGAP1L|ENST00000478442.5	+	174874457,174877391,174957456,174957890	174874506,174877605,174957549,174958182	0.700000
tibial_nerve_female_adult_51_years	chr5	67798680	67798683	67798682	-	High_confidence	66	100	110	9.429974	5.451190	chr5	67798510	67798862	LTR|ERVL-MaLR|THE1B	-	chr5	67723812	67798672	STRG.47364.4	-	67723812,67798592	67724088,67798672	0.572727
tibial_nerve_female_adult_51_years	chr14	77736987	77737020	77736987	-	High_confidence	6	6	13	1.114451	3.085055	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	1.000000
tibial_nerve_female_adult_51_years	chr11	64226142	64226180	64226158	-	High_confidence	54	58	302	25.889564	6.740636	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.966887
tibial_nerve_female_adult_51_years	chr5	115956529	115956676	115956675	+	High_confidence	39	40	301	25.803837	6.814658	chr5	115956262	115957250	LINE|L2|L2b	-	chr5	115956536	115958565	STRG.49978.1	+	115956536,115958428	115956920,115958565	0.634551
tibial_nerve_female_adult_51_years	chr1	226939240	226939242	226939240	+	High_confidence	4	7	9	0.771543	2.503258	chr1	226939237	226939309	DNA|hAT-Charlie|Charlie18a	-	chr1	226940236	226987545	ADCK3|NM_020247.4	+	226940236,226961376,226964999,226965670,226977448,226982026,226982677,226982893,226983551,226983760,226984093,226984547,226984875,226985253,226986452	226940399,226961562,226965410,226965737,226977523,226982149,226982763,226983034,226983633,226983854,226984235,226984655,226984941,226985340,226987545	1.000000
tibial_nerve_female_adult_51_years	chr4	102431237	102431250	102431247	-	High_confidence	8	9	21	1.800268	3.576618	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.904762
tibial_nerve_female_adult_51_years	chr5	42813610	42813647	42813613	+	High_confidence	57	60	208	17.831223	4.541031	chr5	42813649	42814032	LTR|ERV1|Harlequin-int	+	chr5	42813383	42959903	STRG.46529.1	+	42813383,42891306,42922737,42959381	42813919,42891443,42922873,42959903	0.509615
tibial_nerve_female_adult_51_years	chr3	128626784	128626823	128626822	-	RAMPAGE_only	4	4	16	1.371633	3.189898	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.937500
tibial_nerve_female_adult_51_years	chr9	20658312	20658349	20658312	+	High_confidence	7	7	28	2.400357	3.912114	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.678571
tibial_nerve_female_adult_51_years	chr8	124673331	124673384	124673383	-	High_confidence	10	16	50	4.286352	4.317781	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.800000
tibial_nerve_female_adult_51_years	chr6	35665638	35665725	35665638	-	RAMPAGE_only	10	13	132	11.315968	5.557811	chr6	35665293	35665588	SINE|Alu|AluSc	-	chr6	35573589	35688915	STRG.55810.4	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35688093	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35684485,35688915	1.000000
tibial_nerve_female_adult_51_years	chr10	105644475	105644497	105644475	+	High_confidence	4	4	10	0.857270	2.521928	chr10	105644158	105644712	LTR|ERVL|MLT2B3	+	chr10	105644338	105681414	STRG.89938.2	+	105644338,105677192	105644626,105681414	0.900000
tibial_nerve_female_adult_51_years	chr7	154928682	154928712	154928682	+	High_confidence	3	3	10	0.857270	2.846439	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928553	154948511	STRG.71811.1	+	154928553,154928955,154944026,154946359,154946639,154947692,154947897	154928767,154929024,154944620,154946493,154946791,154947773,154948511	1.000000
tibial_nerve_female_adult_51_years	chr5	34244813	34244817	34244815	-	High_confidence	19	35	50	4.286352	3.693778	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34172324	34244783	STRG.45984.2	-	34172324,34175821,34179012,34182679,34218294,34239374,34244615	34175537,34175957,34179097,34182867,34218450,34239448,34244783	0.880000
tibial_nerve_female_adult_51_years	chr2	217704048	217704094	217704048	-	RAMPAGE_only	2	2	9	0.771543	2.503258	chr2	217703989	217704059	SINE|tRNA|LFSINE_Vert	+	chr2	217284022	217756593	DIRC3|NR_026597.1	-	217284022,217317965,217318919,217325845,217327996,217425301,217426590,217427390,217432922,217433947,217478380,217599611,217756467	217284863,217318201,217319177,217325970,217328152,217425522,217426786,217427473,217433021,217434116,217478558,217600829,217756593	0.888889
tibial_nerve_female_adult_51_years	chr6	33640851	33640896	33640895	+	RAMPAGE_only	3	3	13	1.114451	3.392747	chr6	33640927	33641005	SINE|MIR|MIR3	+	chr6	33621378	33696574	ITPR3|NM_002224.3	+	33621378,33640483,33655765,33657931,33658669,33659020,33659465,33662527,33662910,33663499,33663737,33664869,33665052,33665834,33667128,33667791,33668514,33668973,33670324,33670670,33671164,33672028,33673590,33674207,33675690,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33683206,33684019,33684356,33684597,33684773,33685358,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33621691,33640554,33655887,33658018,33658828,33659119,33659549,33662674,33663006,33663550,33663880,33664969,33665213,33665976,33667290,33667964,33668634,33669156,33670576,33670815,33671306,33672228,33673720,33674265,33675856,33676932,33677089,33677629,33678543,33678839,33680133,33680454,33680680,33682644,33683397,33684168,33684465,33684688,33684943,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696574	0.846154
tibial_nerve_female_adult_51_years	chr7	82214035	82214042	82214035	-	RAMPAGE_only	4	4	9	0.771543	2.725481	chr7	82213847	82214213	LTR|ERVL-MaLR|MLT1A0	-	chr7	82117043	82343236	CACNA2D1|ENST00000484706.1	-	82117043,82136634,82170549,82335134,82343053	82117173,82136676,82170609,82335251,82343236	0.555556
tibial_nerve_female_adult_51_years	chr17	67920092	67920096	67920092	+	High_confidence	5	5	10	0.857270	2.725481	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	0.900000
tibial_nerve_female_adult_51_years	chr8	116648864	116648905	116648874	-	RAMPAGE_only	5	5	31	2.657538	4.349200	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.967742
tibial_nerve_female_adult_51_years	chr5	32403108	32403109	32403108	-	RAMPAGE_only	8	8	12	1.028724	2.594907	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354628	32400364	STRG.45812.3	-	32354628,32363947,32364163,32379114,32387548,32388468,32390274,32395158,32397218,32400006	32355939,32364045,32364275,32385649,32387699,32388674,32390437,32395304,32397338,32400364	0.916667
tibial_nerve_female_adult_51_years	chr10	103181328	103181329	103181328	-	High_confidence	12	12	12	1.028724	3.084963	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103099925	103181383	STRG.89877.7	-	103099925,103101044,103101234,103105705,103106588,103111744,103139405,103174857,103176485	103100019,103101102,103101326,103105801,103106706,103111805,103139479,103174982,103181383	0.666667
tibial_nerve_female_adult_51_years	chr13	49495740	49495741	49495740	+	High_confidence	6	6	9	0.771543	2.500000	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495664	49518060	PHF11|ENST00000481509.5	+	49495664,49513058,49518017	49496095,49513166,49518060	0.666667
tibial_nerve_female_adult_51_years	chr9	98943575	98943578	98943575	+	High_confidence	8	8	14	1.200178	3.235926	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
tibial_nerve_female_adult_51_years	chr8	38825317	38825361	38825360	+	RAMPAGE_only	53	53	125	10.715879	5.660573	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.928000
tibial_nerve_female_adult_51_years	chr20	45833293	45833324	45833305	-	High_confidence	3	3	16	1.371633	3.189898	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45824315	45833705	STRG.138866.1	-	45824315,45824494,45824782,45833250,45833657	45824406,45824638,45824834,45833328,45833705	0.875000
tibial_nerve_female_adult_51_years	chr14	38948236	38948252	38948245	-	High_confidence	19	19	59	5.057895	4.929114	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	0.898305
tibial_nerve_female_adult_51_years	chr2	73072209	73072234	73072233	-	High_confidence	3	4	14	1.200178	3.324863	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.571429
tibial_nerve_female_adult_51_years	chr9	106278166	106278185	106278166	+	High_confidence	4	4	14	1.200178	2.777363	chr9	106277947	106278267	LINE|RTE-X|L4_C_Mam	+	chr9	106278156	106278471	STRG.82770.1	+	106278156	106278471	0.785714
tibial_nerve_female_adult_51_years	chr4	86453190	86453232	86453195	-	High_confidence	7	10	49	4.200625	4.800949	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016074	86453196	MAPK10|ENST00000641854.1	-	86016074,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86107352,86159467,86194407,86354644,86453196	0.714286
tibial_nerve_female_adult_51_years	chr7	100351420	100351443	100351420	+	RAMPAGE_only	5	5	13	1.114451	2.815072	chr7	100351420	100351962	LINE|L2|L2	-	chr7	100336242	100351900	STRG.69253.16	+	100336242,100338178,100338772,100345864,100349716,100351251	100336337,100338264,100338889,100345968,100349887,100351900	0.923077
tibial_nerve_female_adult_51_years	chr2	159428356	159428357	159428356	-	RAMPAGE_only	12	13	15	1.285905	3.521641	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.600000
tibial_nerve_female_adult_51_years	chr3	155018841	155018867	155018841	+	RAMPAGE_only	8	8	24	2.057449	4.088779	chr3	155018833	155019082	SINE|MIR|MIRc	-	chr3	155024123	155180849	MME|ENST00000492661.5	+	155024123,155084157,155085058,155114993,155116478,155116663,155116867,155118745,155138101,155140190,155141990,155142236,155143442,155144358,155147143,155148549,155160389,155166901,155168491,155168731,155172116,155172535,155180359	155024324,155084327,155085094,155115155,155116559,155116759,155116986,155118811,155138236,155140292,155142127,155142330,155143571,155144457,155147224,155148653,155160448,155167021,155168625,155168797,155172212,155172612,155180849	0.791667
tibial_nerve_female_adult_51_years	chr5	149509882	149509920	149509882	-	RAMPAGE_only	5	5	24	2.057449	3.538311	chr5	149509722	149509839	SINE|Alu|AluJb	-	chr5	149496587	149513221	CSNK1A1|ENST00000606719.5	-	149496587,149505446,149507026,149509878,149511793,149513069	149496860,149505595,149507133,149509953,149511872,149513221	0.916667
tibial_nerve_female_adult_51_years	chr3	44439829	44439872	44439871	-	RAMPAGE_only	2	2	6	0.514362	2.584963	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431719	44477670	ZNF445|ENST00000396077.7	-	44431719,44449512,44450446,44450867,44451313,44455120,44458243,44477590	44448739,44449623,44450573,44450962,44451482,44455696,44458364,44477670	0.666667
tibial_nerve_female_adult_51_years	chr1	242001524	242001601	242001562	-	High_confidence	14	15	76	6.515254	4.970969	chr1	242001333	242001643	SINE|Alu|AluSx1	+	chr1	241995489	242001587	STRG.12170.1	-	241995489,241998513,241998775,241998950,242001308	241996385,241998620,241998831,241999026,242001587	0.960526
tibial_nerve_female_adult_51_years	chr13	101529688	101529695	101529694	+	RAMPAGE_only	6	7	18	1.543087	3.616875	chr13	101529576	101529918	LTR|ERVL-MaLR|THE1C	+	chr13	101489951	101716446	ITGBL1|NM_001271756.1	+	101489951,101567698,101575423,101579286,101583215,101598152,101692584,101706755,101714437,101715562	101490000,101567845,101575546,101579427,101583356,101598299,101692701,101706902,101714551,101716446	0.777778
tibial_nerve_female_adult_51_years	chr8	18848418	18848449	18848448	-	RAMPAGE_only	6	6	14	1.200178	3.085055	chr8	18848357	18848497	SINE|5S-Deu-L2|AmnSINE1	+	chr8	18800996	18854336	PSD3|ENST00000518303.5	-	18800996,18804521,18804703,18854097	18801382,18804602,18804898,18854336	0.642857
tibial_nerve_female_adult_51_years	chr10	44984661	44984662	44984661	+	RAMPAGE_only	12	12	12	1.028724	2.751629	chr10	44984593	44984662	SINE|MIR|MIR	+	chr10	44983027	44991960	RASSF4|ENST00000471941.5	+	44983027,44989273,44989669,44990947,44991904	44984970,44989375,44989721,44991069,44991960	0.750000
tibial_nerve_female_adult_51_years	chr11	114246774	114246775	114246774	+	High_confidence	19	19	25	2.143176	3.588354	chr11	114246569	114246781	LINE|L2|L2c	-	chr11	114246789	114250476	ZBTB16|ENST00000535509.1	+	114246789,114250325	114247365,114250476	0.840000
tibial_nerve_female_adult_51_years	chr2	204544982	204544986	204544985	+	High_confidence	8	8	16	1.371633	2.858459	chr2	204544936	204545029	SINE|MIR|MIR3	+	chr2	204545179	205194558	STRG.23344.9	+	204545179,204545426,204661808,204686180,204965151,205047580,205104425,205113490,205118920,205121590,205124326,205125608,205158721,205172210,205176444,205185763,205193204	204545351,204546119,204661960,204686282,204965323,205047690,205104514,205113577,205119046,205121949,205124466,205125737,205158907,205172381,205176577,205185863,205194558	0.812500
tibial_nerve_female_adult_51_years	chrX	54998755	54998789	54998788	-	High_confidence	22	23	45	3.857716	4.658303	chrX	54998783	54998927	LINE|L1|L1ME4c	+	chrX	54956074	54998845	STRG.145915.1	-	54956074,54958305,54958850,54959826,54960823,54963256,54998405	54956274,54958362,54958925,54959893,54960917,54963382,54998845	0.822222
tibial_nerve_female_adult_51_years	chr6	35672690	35672744	35672690	-	RAMPAGE_only	2	2	12	1.028724	3.095795	chr6	35672643	35672949	SINE|Alu|AluY	+	chr6	35573589	35688915	STRG.55810.4	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35688093	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35684485,35688915	0.916667
tibial_nerve_female_adult_51_years	chrX	113991907	113991954	113991926	-	RAMPAGE_only	16	16	65	5.572257	5.001964	chrX	113991687	113992070	LTR|ERVL|MLT2A1	-	chrX	113961653	113963678	STRG.148917.1	-	113961653	113963678	0.692308
tibial_nerve_female_adult_51_years	chr6	52955040	52955041	52955040	+	RAMPAGE_only	6	6	6	0.514362	2.584963	chr6	52955078	52955376	SINE|Alu|AluSz6	+	chr6	52995619	52995950	RF00100|ENST00000365328.1	+	52995619	52995950	1.000000
tibial_nerve_female_adult_51_years	chr3	195688688	195688702	195688688	+	High_confidence	2	3	8	0.685816	2.500000	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688681	195708807	MUC20-OT1|ENST00000627562.2	+	195688681,195689338,195699029,195701379,195708133	195688797,195689438,195699207,195701495,195708807	1.000000
tibial_nerve_female_adult_51_years	chr3	33130009	33130038	33130037	+	RAMPAGE_only	5	5	14	1.200178	2.610577	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33114053	33143158	CRTAP|ENST00000449224.1	+	33114053,33120343,33124407,33132554,33134181,33142394	33114548,33120493,33124579,33132700,33134265,33143158	1.000000
tibial_nerve_female_adult_51_years	chr2	6918655	6918680	6918679	-	High_confidence	3	3	8	0.685816	2.750000	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.750000
tibial_nerve_female_adult_51_years	chr13	106561950	106561951	106561950	-	High_confidence	9	9	11	0.942997	2.845351	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.909091
tibial_nerve_female_adult_51_years	chr12	9065161	9065174	9065167	+	High_confidence	7	7	39	3.343354	4.336183	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.666667
tibial_nerve_female_adult_51_years	chr6	35672805	35672840	35672813	-	RAMPAGE_only	4	6	15	1.285905	2.789898	chr6	35672643	35672949	SINE|Alu|AluY	+	chr6	35573589	35688915	STRG.55810.4	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35688093	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35684485,35688915	1.000000
tibial_nerve_female_adult_51_years	chr17	70947788	70947813	70947798	-	RAMPAGE_only	8	8	32	2.743265	4.231402	chr17	70947384	70948869	LINE|L1|L1PB1	+	chr17	70778603	70779230	AC007423.1|ENST00000605009.1	-	70778603	70779230	0.531250
tibial_nerve_female_adult_51_years	chr2	96303166	96303280	96303166	-	RAMPAGE_only	7	7	45	3.857716	4.880525	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.977778
tibial_nerve_female_adult_51_years	chr12	10363964	10363965	10363964	+	High_confidence	7	7	11	0.942997	2.921928	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.636364
tibial_nerve_female_adult_51_years	chr17	69067514	69067535	69067529	-	RAMPAGE_only	3	3	9	0.771543	2.503258	chr17	69067285	69067579	SINE|Alu|AluJb	+	chr17	68975096	69115442	STRG.129161.16	-	68975096,68976134,68982561,68983708,68984055,68984884,68986163,68989026,68990836,68992174,68993015,69007758,69008061,69011975,69016252,69017655,69018412,69020387,69021741,69024213,69026975,69027329,69027639,69028534,69029168,69032107,69033725,69035245,69035659,69043488,69044496,69045171,69049282,69051030,69060865,69061595,69062008,69069256,69079209,69081065,69082872,69083211,69084260,69084431,69085027,69085624,69086617,69087352,69088166,69089464,69091142,69096239,69096627,69097919,69100796,69102834,69105461,69106027,69107695,69110800,69112182,69113221,69113617,69114761,69115375	68976013,68976190,68982641,68983849,68984175,68985128,68986324,68989930,68990957,68992266,68996014,69007872,69008235,69012083,69016390,69017789,69018579,69020586,69021861,69026467,69027114,69027449,69027815,69028645,69029227,69032276,69033873,69035431,69035801,69043715,69044600,69045336,69049490,69051139,69061150,69061917,69062136,69079074,69079265,69081145,69083013,69083331,69084355,69084507,69085182,69085716,69086735,69087473,69088258,69089542,69091262,69096353,69096801,69098027,69100934,69102968,69105628,69106211,69107812,69110940,69112273,69113360,69113737,69114937,69115442	0.777778
tibial_nerve_female_adult_51_years	chr17	2975628	2975661	2975660	+	RAMPAGE_only	4	4	11	0.942997	3.277613	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2991300	3026224	STRG.125207.1	+	2991300,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007	2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026224	0.545455
tibial_nerve_female_adult_51_years	chr2	201115997	201116019	201116007	+	High_confidence	11	11	36	3.086173	4.114718	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201176687	CFLAR|ENST00000309955.7	+	201116103,201129728,201133028,201135971,201140356,201145377,201149002,201149753,201160431,201163834	201116481,201130146,201133134,201136107,201140439,201145432,201149052,201149835,201160942,201176687	0.972222
tibial_nerve_female_adult_51_years	chr12	123390707	123390745	123390744	+	High_confidence	3	3	12	1.028724	3.459432	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.833333
tibial_nerve_female_adult_51_years	chr6	127330839	127330854	127330839	-	High_confidence	2	2	8	0.685816	3.000000	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.875000
tibial_nerve_female_adult_51_years	chr15	75347042	75347082	75347042	+	High_confidence	4	4	10	0.857270	2.721928	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.600000
tibial_nerve_female_adult_51_years	chrX	19349942	19349980	19349979	+	RAMPAGE_only	3	3	10	0.857270	2.921928	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19352828	19355445	PDHA1|ENST00000479146.1	+	19352828,19354490,19355348	19353173,19354583,19355445	0.600000
tibial_nerve_female_adult_51_years	chr4	79244799	79244809	79244808	+	RAMPAGE_only	5	5	10	0.857270	2.947703	chr4	79244642	79246390	Retroposon|SVA|SVA_B	+	chr4	79211680	79245532	LINC01088|ENST00000437737.3	+	79211680,79244683	79211804,79245532	0.600000
tibial_nerve_female_adult_51_years	chr8	30812437	30812454	30812453	-	High_confidence	6	6	16	1.371633	3.773557	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.937500
tibial_nerve_female_adult_51_years	chr22	49657443	49657491	49657443	-	High_confidence	4	4	31	2.657538	4.131300	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49414523	49657504	C22orf34|ENST00000414287.5	-	49414523,49416601,49416814,49440875,49657404	49416035,49416735,49416928,49441212,49657504	0.677419
tibial_nerve_female_adult_51_years	chr9	127451087	127451137	127451087	-	High_confidence	3	3	11	0.942997	3.095795	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.636364
tibial_nerve_female_adult_51_years	chr3	114624940	114625007	114625006	-	High_confidence	21	25	155	13.287690	5.856851	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.767742
tibial_nerve_female_adult_51_years	chr3	29924789	29924907	29924789	+	High_confidence	17	22	97	8.315522	5.213877	chr3	29924556	29924859	SINE|Alu|AluSp	+	chr3	29924750	29991197	RBMS3|ENST00000473799.1	+	29924750,29936085,29944206,29988142,29991081	29925243,29936196,29944254,29988223,29991197	0.969072
tibial_nerve_female_adult_51_years	chr6	36542116	36542135	36542116	-	RAMPAGE_only	4	4	14	1.200178	2.719295	chr6	36541819	36542134	SINE|Alu|AluSx1	-	chr6	36493891	36545268	STRG.55840.5	-	36493891,36496710,36497779,36498362,36499872,36515337,36524340,36525590,36540071	36495914,36496805,36497875,36498486,36507602,36521817,36524463,36525642,36545268	0.928571
tibial_nerve_female_adult_51_years	chr1	166850105	166850153	166850124	+	RAMPAGE_only	7	7	29	2.486084	3.852498	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.931034
tibial_nerve_female_adult_51_years	chr1	89272843	89272887	89272867	-	High_confidence	7	7	30	2.571811	3.883337	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.866667
tibial_nerve_female_adult_51_years	chr12	7502480	7502547	7502546	-	High_confidence	8	10	51	4.372079	4.981658	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.941176
tibial_nerve_female_adult_51_years	chr5	62432200	62432227	62432226	+	RAMPAGE_only	3	3	9	0.771543	2.725481	chr5	62432201	62432725	LINE|L1|L1M4b	-	chr5	62418883	62627704	IPO11|ENST00000409296.7	+	62418883,62437273,62442982,62449926,62451729,62467130,62470249,62474415,62476682,62483100,62484009,62485418,62487770,62489301,62490114,62493997,62504666,62504857,62506240,62515387,62526141,62530708,62536701,62537208,62550366,62551222,62561135,62591576,62601763,62627153	62419127,62437417,62443083,62449999,62451933,62467263,62470308,62474464,62476753,62483293,62484162,62485462,62487861,62489349,62490220,62494124,62504700,62504898,62506357,62515501,62526257,62530785,62536781,62537289,62550462,62551336,62561257,62591672,62601848,62627704	0.777778
tibial_nerve_female_adult_51_years	chr20	18794054	18794086	18794085	+	High_confidence	29	30	106	9.087065	5.100902	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.971698
tibial_nerve_female_adult_51_years	chr11	94643897	94643898	94643897	+	RAMPAGE_only	6	6	8	0.685816	2.750000	chr11	94642011	94645008	LTR|ERV1|HERVH-int	+	chr11	94641929	94648574	AP000943.2|ENST00000541293.1	+	94641929,94647334,94648259	94641944,94647578,94648574	0.750000
tibial_nerve_female_adult_51_years	chr4	79086177	79086180	79086177	+	High_confidence	10	10	19	1.628814	3.536887	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.789474
tibial_nerve_female_adult_51_years	chr17	4143196	4143209	4143199	+	High_confidence	47	49	95	8.144068	4.921640	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.989474
tibial_nerve_female_adult_51_years	chr12	643625	643636	643627	-	High_confidence	11	25	42	3.600535	4.560667	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.571429
tibial_nerve_female_adult_51_years	chr17	42403487	42403828	42403692	-	RAMPAGE_only	27	27	328	28.118467	6.679956	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	1.000000
tibial_nerve_female_adult_51_years	chr10	45594266	45594316	45594305	-	High_confidence	2	2	8	0.685816	2.521641	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45461386	45594491	MARCH8|ENST00000453980.3	-	45461386,45464238,45489366,45533109,45553111,45594234	45461411,45464327,45489417,45533289,45553204,45594491	0.875000
tibial_nerve_female_adult_51_years	chr2	240022172	240022196	240022172	-	RAMPAGE_only	6	6	22	1.885995	3.684184	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.863636
tibial_nerve_female_adult_51_years	chr2	229586887	229586909	229586902	-	High_confidence	4	4	12	1.028724	3.459432	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229477161	229586950	STRG.24742.1	-	229477161,229512782,229546946,229585857,229586693	229477253,229512936,229547092,229586024,229586950	0.833333
tibial_nerve_female_adult_51_years	chr22	48693187	48693220	48693219	+	High_confidence	26	31	112	9.601428	5.760772	chr22	48693219	48693333	LINE|L1|L1ME4c	+	chr22	48693246	48750408	FAM19A5|ENST00000406880.1	+	48693246,48707716,48749838	48693381,48707844,48750408	0.919643
tibial_nerve_female_adult_51_years	chr11	123487414	123487466	123487441	+	High_confidence	38	42	231	19.802944	4.929844	chr11	123487237	123487531	LINE|L2|L2c	-	chr11	123487393	123627770	STRG.98339.1	+	123487393,123577366,123584311,123594081,123594734,123595941,123600467,123603425,123605321,123606608,123608658,123609794,123610195,123612760,123613454,123614744,123618692,123619106,123622505	123488060,123577577,123584332,123594166,123594838,123596037,123600548,123603541,123605478,123606798,123608802,123609913,123610338,123612864,123613658,123614835,123618800,123619224,123627770	0.900433
tibial_nerve_female_adult_51_years	chr7	74883320	74883360	74883320	-	RAMPAGE_only	4	4	12	1.028724	3.027169	chr7	74883163	74883298	SINE|Alu|FLAM_C	-	chr7	74882162	74890610	STAG3L2|ENST00000426587.5	-	74882162,74883727,74884143,74884433,74885022,74887682,74888311,74890387	74883463,74883835,74884223,74884524,74885146,74887799,74888397,74890610	0.833333
tibial_nerve_female_adult_51_years	chr10	17386935	17387000	17386935	+	High_confidence	12	13	35	3.000446	4.300554	chr10	17386606	17386994	LTR|ERV1|MER48	-	chr10	17387037	17441658	STRG.85411.1	+	17387037,17399104,17407967,17437204,17441237,17441639	17387075,17399202,17408244,17437320,17441286,17441658	0.514286
tibial_nerve_female_adult_51_years	chr20	3795750	3795789	3795788	+	High_confidence	15	15	118	10.115790	5.892903	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.966102
tibial_nerve_female_adult_51_years	chr17	82081603	82081710	82081603	-	RAMPAGE_only	8	13	46	3.943443	4.838567	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079006	82086017	STRG.129778.5	-	82079006,82079356,82080139,82080369,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481	82079280,82079608,82080238,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82086017	1.000000
tibial_nerve_female_adult_51_years	chr14	91462153	91462224	91462223	-	High_confidence	4	5	23	1.971722	3.754442	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.956522
tibial_nerve_female_adult_51_years	chr12	76050866	76050894	76050866	-	RAMPAGE_only	3	3	11	0.942997	2.663533	chr12	76050731	76051020	SINE|Alu|AluJo	+	chr12	76049433	76053158	NAP1L1|ENST00000547969.5	-	76049433,76050530,76053090	76049785,76050653,76053158	0.727273
tibial_nerve_female_adult_51_years	chr13	52570288	52570324	52570323	+	RAMPAGE_only	5	5	21	1.800268	2.944395	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.809524
tibial_nerve_female_adult_51_years	chr7	104940943	104940944	104940943	+	High_confidence	34	34	35	3.000446	3.876838	chr7	104939974	104941430	LTR|ERV1|LTR12C	+	chr7	104941062	104962060	AC007384.1|ENST00000415513.1	+	104941062,104961983	104941670,104962060	0.942857
tibial_nerve_female_adult_51_years	chr11	32854381	32854424	32854420	+	RAMPAGE_only	38	38	99	8.486976	2.871297	chr11	32854273	32854578	SINE|Alu|AluSx1	+	chr11	32829942	32858123	PRRG4|ENST00000257836.3	+	32829942,32830507,32836657,32838881,32840106,32853295	32830173,32830632,32836821,32838930,32840239,32858123	0.989899
tibial_nerve_female_adult_51_years	chr14	100829513	100829577	100829513	+	High_confidence	6	6	34	2.914719	3.884859	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.823529
tibial_nerve_female_adult_51_years	chr6	35662588	35662603	35662602	-	RAMPAGE_only	17	18	37	3.171900	3.392865	chr6	35662276	35662582	SINE|Alu|AluJb	-	chr6	35573589	35688915	STRG.55810.4	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35688093	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35684485,35688915	0.972973
tibial_nerve_female_adult_51_years	chr1	46804345	46804370	46804354	+	RAMPAGE_only	86	86	267	22.889118	6.372379	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.561798
tibial_nerve_female_adult_51_years	chr8	108948901	108948919	108948918	-	High_confidence	5	5	14	1.200178	3.238901	chr8	108948659	108949043	LINE|L2|L2b	+	chr8	108915977	108948901	STRG.76551.2	-	108915977,108918536,108948774	108916091,108918646,108948901	0.500000
tibial_nerve_female_adult_51_years	chr6	56836753	56836756	56836755	-	RAMPAGE_only	6	8	10	0.857270	2.921928	chr6	56836568	56836880	SINE|Alu|AluYi6	+	chr6	56670487	56843146	DST|ENST00000521821.1	-	56670487,56699652,56701887,56704279,56735227,56843054	56670807,56699745,56701965,56704369,56735289,56843146	0.800000
tibial_nerve_female_adult_51_years	chr14	95516099	95516122	95516107	+	High_confidence	9	9	35	3.000446	4.499228	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.971429
tibial_nerve_female_adult_51_years	chr7	99410146	99410162	99410146	+	High_confidence	4	4	10	0.857270	2.921928	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.800000
tibial_nerve_female_adult_51_years	chr3	114759213	114759277	114759276	-	High_confidence	5	5	11	0.942997	3.277613	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.727273
tibial_nerve_female_adult_51_years	chr19	47780076	47780108	47780083	+	High_confidence	5	5	16	1.371633	3.750000	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.937500
tibial_nerve_female_adult_51_years	chr11	117836267	117836303	117836297	+	High_confidence	4	4	21	1.800268	4.021928	chr11	117836254	117836523	SINE|Alu|AluJb	-	chr11	117836291	117838090	STRG.98028.1	+	117836291,117837167	117836502,117838090	0.809524
tibial_nerve_female_adult_51_years	chr22	39874066	39874070	39874066	-	High_confidence	37	44	59	5.057895	4.668649	chr22	39873891	39874245	LTR|ERVL-MaLR|THE1B	-	chr22	39861729	39874099	STRG.143398.2	-	39861729,39873974	39862007,39874099	0.593220
tibial_nerve_female_adult_51_years	chr12	57532020	57532075	57532074	-	RAMPAGE_only	3	3	9	0.771543	2.500000	chr12	57531960	57532134	LINE|RTE-BovB|MamRTE1	+	chr12	57530678	57535070	DCTN2|ENST00000546758.5	-	57530678,57532014,57532212,57532571,57532783,57532983,57533237,57533952,57534291,57535055	57530775,57532106,57532315,57532643,57532810,57533022,57533303,57534097,57534452,57535070	0.555556
tibial_nerve_female_adult_51_years	chr9	2559276	2559323	2559314	-	RAMPAGE_only	13	13	43	3.686262	4.553944	chr9	2559104	2562332	LINE|L1|L1M1	+	chr9	2421596	2621386	VLDLR-AS1|ENST00000648733.1	-	2421596,2425396,2493239,2494179,2503269,2506418,2521902,2523052,2525537,2536358,2539398,2621228	2424510,2425540,2493425,2494302,2503403,2506540,2522046,2523157,2525717,2536453,2539552,2621386	0.604651
tibial_nerve_female_adult_51_years	chr16	2769849	2769910	2769884	+	High_confidence	7	7	29	2.486084	3.749868	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2771410	STRG.122141.20	+	2769894,2770603,2770857,2771120	2770465,2770717,2771049,2771410	0.965517
tibial_nerve_female_adult_51_years	chr1	21876237	21876279	21876237	-	RAMPAGE_only	3	3	17	1.457360	3.577820	chr1	21876092	21876241	LINE|L2|L2c	+	chr1	21822244	21896271	STRG.1105.1	-	21822244,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896271	0.823529
tibial_nerve_female_adult_51_years	chr19	11165791	11165813	11165791	-	RAMPAGE_only	7	7	12	1.028724	3.084963	chr19	11165564	11165853	SINE|Alu|AluJo	-	chr19	11164269	11175947	KANK2|ENST00000588787.5	-	11164269,11170047,11172980,11174472,11175901	11166611,11170248,11173123,11174692,11175947	1.000000
tibial_nerve_female_adult_51_years	chr10	124605476	124605477	124605476	+	RAMPAGE_only	6	6	9	0.771543	2.500000	chr10	124605271	124605664	LINE|L2|L2b	-	chr10	124461842	124614141	LHPP|ENST00000368839.1	+	124461842,124484138,124488421,124496960,124498035,124613263	124461987,124484326,124488575,124497024,124498128,124614141	0.888889
tibial_nerve_female_adult_51_years	chr6	35680227	35680306	35680266	-	RAMPAGE_only	7	11	41	3.514808	4.405856	chr6	35680148	35680449	SINE|Alu|AluJr	+	chr6	35573589	35688915	STRG.55810.4	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35688093	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35684485,35688915	1.000000
tibial_nerve_female_adult_51_years	chr19	41545191	41545192	41545191	+	RAMPAGE_only	11	11	11	0.942997	3.459432	chr19	41544577	41545607	LTR|ERVK|LTR5A	+	chr19	41549517	41586844	CEACAM21|NM_001288773.2	+	41549517,41564681,41577199,41579269,41584346,41585442,41585839,41586463	41549552,41565056,41577559,41579628,41584443,41585495,41585871,41586844	0.545455
tibial_nerve_female_adult_51_years	chr12	8681676	8681677	8681676	+	High_confidence	14	14	18	1.543087	3.530493	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.722222
tibial_nerve_female_adult_51_years	chr5	180830993	180831032	180831031	+	High_confidence	12	12	69	5.915165	5.296662	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831026	180834779	LINC00847|ENST00000508309.1	+	180831026,180834311	180831229,180834779	0.695652
tibial_nerve_female_adult_51_years	chr1	23441105	23441119	23441105	-	RAMPAGE_only	5	5	9	0.771543	2.500000	chr1	23441037	23441124	SINE|MIR|MIR	+	chr1	23436926	23442271	ASAP3|ENST00000475814.5	-	23436926,23437129,23437423,23438746,23441101,23441386,23441654,23442185	23437044,23437320,23437472,23438834,23441211,23441473,23441730,23442271	0.555556
tibial_nerve_female_adult_51_years	chr10	124605274	124605364	124605282	+	High_confidence	37	38	194	16.631044	6.630680	chr10	124605271	124605664	LINE|L2|L2b	-	chr10	124605199	124613425	LHPP|ENST00000486535.1	+	124605199,124613263	124605515,124613425	0.618557
tibial_nerve_female_adult_51_years	chr15	69422823	69422859	69422823	+	High_confidence	5	5	16	1.371633	3.240224	chr15	69422804	69423097	SINE|Alu|AluSx	-	chr15	69422899	69447918	KIF23|ENST00000558585.5	+	69422899,69423158,69425281,69426069,69426335,69429110,69435482,69435651,69436137,69436563,69438247,69439903,69440307,69444789,69446008,69446282,69446870,69447791	69423034,69423329,69425323,69426182,69426457,69429213,69435562,69435771,69436261,69436722,69438405,69440077,69440487,69445041,69446091,69446364,69446941,69447918	0.875000
tibial_nerve_female_adult_51_years	chr15	34588450	34588453	34588450	-	High_confidence	11	15	22	1.885995	3.516028	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	1.000000
tibial_nerve_female_adult_51_years	chr5	142875135	142875157	142875156	+	High_confidence	6	6	14	1.200178	3.026987	chr5	142875200	142875313	SINE|MIR|MIR3	+	chr5	142874892	142919443	ARHGAP26|ENST00000475287.2	+	142874892,142879373,142885297,142894237,142901934,142903539,142907703,142913198,142919210	142875171,142879445,142885399,142894348,142902039,142903669,142907804,142913293,142919443	0.857143
tibial_nerve_female_adult_51_years	chr10	67601015	67601032	67601031	-	RAMPAGE_only	4	5	9	0.771543	2.750000	chr10	67600489	67601182	LINE|L1|L1ME3A	+	chr10	65912528	67665642	STRG.87574.1	-	65912528,65966611,65988691,66069307,66103156,66280469,66379151,66520616,66621691,66766263,66775443,67180316,67219606,67521841,67539502,67606856,67647414,67648739,67665540	65920617,65966746,65988797,66069489,66103249,66280621,66379352,66520773,66621784,66766416,66775524,67180520,67219870,67521961,67539669,67607049,67647518,67648816,67665642	0.888889
tibial_nerve_female_adult_51_years	chr8	57746128	57746129	57746128	+	High_confidence	79	80	82	7.029617	4.273011	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.963415
tibial_nerve_female_adult_51_years	chr5	150125450	150125484	150125450	-	High_confidence	16	17	27	2.314630	3.317406	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150124169	150125520	PDGFRB|ENST00000520229.1	-	150124169,150125444	150124831,150125520	0.518519
tibial_nerve_female_adult_51_years	chr10	69494984	69495006	69494998	+	High_confidence	3	3	13	1.114451	3.546594	chr10	69494989	69495143	SINE|MIR|MIR3	+	chr10	69494970	69507077	TSPAN15|ENST00000486093.5	+	69494970,69495593,69498279,69504437,69506123,69506828	69495036,69495689,69498396,69504485,69506240,69507077	0.769231
tibial_nerve_female_adult_51_years	chr1	176162904	176162937	176162936	-	RAMPAGE_only	6	6	14	1.200178	3.392747	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.642857
tibial_nerve_female_adult_51_years	chrX	16712889	16712923	16712889	-	High_confidence	6	6	21	1.800268	2.931109	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16590681	16712897	STRG.144775.1	-	16590681,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712334	16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712897	0.904762
tibial_nerve_female_adult_51_years	chr13	48580933	48580938	48580933	-	High_confidence	7	7	13	1.114451	3.180833	chr13	48580763	48581196	LTR|ERVL-MaLR|THE1B	-	chr13	48576973	48580901	LINC00462|NR_051983.1	-	48576973,48578012,48580840	48577859,48578088,48580901	1.000000
tibial_nerve_female_adult_51_years	chr19	48797753	48797793	48797753	-	High_confidence	8	8	24	2.057449	3.827910	chr19	48797676	48797747	SINE|Alu|AluYk11	-	chr19	48796246	48797543	BCAT2|ENST00000599510.1	-	48796246,48796577,48796936,48797190	48796502,48796718,48797022,48797543	0.500000
tibial_nerve_female_adult_51_years	chr3	151539230	151539266	151539265	-	RAMPAGE_only	5	5	15	1.285905	3.378783	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151453391	151460819	STRG.33006.1	-	151453391,151457025,151458515,151460260	151453774,151457155,151458710,151460819	0.533333
tibial_nerve_female_adult_51_years	chr17	41871745	41871820	41871745	-	RAMPAGE_only	3	3	17	1.457360	3.499228	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.941176
tibial_nerve_female_adult_51_years	chr11	123061200	123061322	123061321	-	High_confidence	19	22	156	13.373417	5.311926	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.955128
tibial_nerve_female_adult_51_years	chr3	180870518	180870522	180870518	-	High_confidence	4	6	12	1.028724	3.251629	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180747908	180870515	STRG.34828.1	-	180747908,180751347,180781983,180847506,180870046	180748316,180751410,180782124,180847624,180870515	0.750000
tibial_nerve_female_adult_51_years	chr1	19344364	19344429	19344388	-	RAMPAGE_only	12	12	49	4.200625	4.765534	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.877551
tibial_nerve_female_adult_51_years	chr12	28825943	28825962	28825961	-	High_confidence	4	7	15	1.285905	3.056565	chr12	28825676	28826170	LTR|ERVL|MLT2B3	-	chr12	28821974	28825831	AC022081.1|ENST00000537327.1	-	28821974,28825697	28822273,28825831	1.000000
tibial_nerve_female_adult_51_years	chr6	144533090	144533113	144533090	+	RAMPAGE_only	16	17	32	2.743265	4.389365	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.906250
tibial_nerve_female_adult_51_years	chr2	227164620	227164621	227164620	+	High_confidence	12	12	13	1.114451	3.584963	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164636	227280952	STRG.24483.2	+	227164636,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227279792,227280439,227280892	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227279890,227280590,227280952	0.692308
tibial_nerve_female_adult_51_years	chr19	20423690	20423704	20423697	-	RAMPAGE_only	14	18	58	4.972168	4.525495	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.672414
tibial_nerve_female_adult_51_years	chr14	73273140	73273161	73273151	+	RAMPAGE_only	3	3	8	0.685816	2.521641	chr14	73272980	73273279	SINE|Alu|AluSq2	-	chr14	73262499	73274620	PAPLN|ENST00000559759.1	+	73262499,73263644,73264210,73264587,73265369,73272494	73262827,73263782,73264335,73264726,73265507,73274620	0.875000
tibial_nerve_female_adult_51_years	chrX	53585017	53585018	53585017	-	RAMPAGE_only	7	7	7	0.600089	2.521641	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	1.000000
tibial_nerve_female_adult_51_years	chr7	121062866	121062867	121062866	+	High_confidence	65	65	75	6.429527	5.110671	chr7	121062672	121063032	LTR|ERVL-MaLR|THE1B	+	chr7	121062764	121261918	CPED1|ENST00000423795.5	+	121062764,121064237,121097698,121099925,121124330,121125819,121127089,121128381,121130124,121133822,121136039,121140826,121141972,121236713,121244201,121261631	121062896,121064313,121097831,121100094,121124473,121125892,121127257,121128486,121130294,121133893,121136090,121141013,121142141,121236831,121244338,121261918	0.880000
tibial_nerve_female_adult_51_years	chr9	92536697	92536704	92536703	-	High_confidence	6	6	11	0.942997	2.921928	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.727273
tibial_nerve_female_adult_51_years	chr14	95481761	95481766	95481761	-	RAMPAGE_only	16	17	32	2.743265	4.687500	chr14	95481614	95481737	LTR|ERVL|LTR33A_	-	chr14	95443660	95475836	SYNE3|ENST00000553340.1	-	95443660,95445908,95449930,95452246,95455376,95457176,95465930,95467794,95475677	95444628,95446091,95450105,95452383,95455724,95457338,95466240,95467967,95475836	0.906250
tibial_nerve_female_adult_51_years	chr17	69196714	69196736	69196718	-	RAMPAGE_only	3	4	14	1.200178	3.085055	chr17	69195559	69197005	Retroposon|SVA|SVA_B	-	chr17	69148744	69225442	STRG.129161.45	-	69148744,69149032,69149983,69152042,69152361,69153304,69153830,69154234,69155018,69155804,69156831,69164073,69164963,69174280,69174606,69175405,69182152,69182674,69185476,69187680,69190357,69191175,69192562,69193109,69193492,69193813,69194384,69197063,69201499,69214703,69215814,69216216,69219544,69221791,69222532,69225324	69148925,69149088,69150063,69152183,69152481,69153546,69154009,69154326,69155136,69155925,69156923,69164154,69165083,69174394,69174777,69175513,69182290,69182808,69185643,69187879,69190477,69191315,69192653,69193248,69193612,69193989,69196663,69197122,69201668,69214851,69216000,69216358,69219771,69221895,69222697,69225442	0.928571
tibial_nerve_female_adult_51_years	chr7	134549109	134549114	134549113	+	High_confidence	3	3	7	0.600089	2.584963	chr7	134549070	134551552	LTR|ERV1|HERVS71-int	+	chr7	134549096	134579840	AKR1B15|NM_001080538.2	+	134549096,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579840	0.571429
tibial_nerve_female_adult_51_years	chr4	86453415	86453438	86453427	-	High_confidence	5	5	12	1.028724	2.617492	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016085	86453436	MAPK10|ENST00000641170.1	-	86016085,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453436	0.916667
tibial_nerve_female_adult_51_years	chr9	121313938	121314021	121314002	+	RAMPAGE_only	87	88	544	46.635505	5.990846	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.992647
tibial_nerve_female_adult_51_years	chr17	41108251	41108295	41108252	+	High_confidence	18	36	166	14.230687	5.264980	chr17	41107954	41108546	LTR|ERV1|MER4-int	+	chr17	41108293	41110938	STRG.127302.1	+	41108293,41110003	41108379,41110938	0.969880
tibial_nerve_female_adult_51_years	chr16	8842153	8842160	8842153	+	High_confidence	32	32	54	4.629260	4.309719	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.962963
tibial_nerve_female_adult_51_years	chr9	129698722	129698738	129698737	+	RAMPAGE_only	6	6	12	1.028724	2.663533	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	0.916667
tibial_nerve_female_adult_51_years	chr5	133089677	133089678	133089677	+	RAMPAGE_only	8	8	11	0.942997	2.646439	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.909091
tibial_nerve_female_adult_51_years	chr19	40608536	40608594	40608593	+	RAMPAGE_only	5	6	21	1.800268	3.892407	chr19	40608638	40608924	SINE|Alu|AluSq2	+	chr19	40601370	40629820	LTBP4|NM_001042545.1	+	40601370,40605034,40605404,40605728,40606232,40606403,40607364,40608219,40608483,40609529,40609745,40610531,40611151,40611858,40612072,40613064,40613403,40613915,40614314,40616888,40617099,40619346,40622400,40622949,40623603,40623935,40625856,40626974,40627704,40629395	40601637,40605226,40605652,40605831,40606307,40606526,40607529,40608369,40608603,40609661,40609871,40610657,40611394,40611984,40612192,40613196,40613529,40614038,40614446,40617020,40617225,40619493,40622667,40623021,40623732,40624082,40626009,40627355,40627857,40629820	0.761905
tibial_nerve_female_adult_51_years	chr9	121299286	121299287	121299286	+	High_confidence	9	9	14	1.200178	2.753434	chr9	121299335	121299426	SINE|MIR|MIR	+	chr9	121299792	121312475	STRG.83780.12	+	121299792,121301923,121302910,121310683,121312338	121300126,121302167,121303065,121310845,121312475	0.642857
tibial_nerve_female_adult_51_years	chr5	151687244	151687251	151687244	-	High_confidence	20	21	47	4.029171	4.832813	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151667473	151687249	STRG.52476.2	-	151667473,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687249	0.702128
tibial_nerve_female_adult_51_years	chr8	53523862	53523863	53523862	-	High_confidence	7	7	9	0.771543	2.947703	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
tibial_nerve_female_adult_51_years	chr2	121902489	121902534	121902489	+	High_confidence	9	10	16	1.371633	3.250000	chr2	121902488	121902606	LINE|L2|L2a	-	chr2	121902472	121944449	STRG.19003.1	+	121902472,121944333	121902989,121944449	0.687500
tibial_nerve_female_adult_51_years	chr7	6590248	6590286	6590285	+	High_confidence	5	5	32	2.743265	4.440224	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.625000
tibial_nerve_female_adult_51_years	chr12	121335498	121335533	121335498	-	High_confidence	7	7	17	1.457360	3.250000	chr12	121335158	121335465	SINE|Alu|AluSq2	-	chr12	121326485	121335172	ANAPC5|ENST00000538334.1	-	121326485,121327095,121330582	121326642,121328497,121335172	0.588235
tibial_nerve_female_adult_51_years	chr9	33068841	33068884	33068841	-	RAMPAGE_only	3	3	17	1.457360	3.280639	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.941176
tibial_nerve_female_adult_51_years	chr17	75720489	75720512	75720511	+	High_confidence	15	17	24	2.057449	3.688722	chr17	75720318	75720616	SINE|Alu|AluSx1	+	chr17	75721327	75757818	ITGB4|NM_001321123.1	+	75721327,75724693,75727194,75727403,75727650,75728376,75729264,75730240,75730874,75731245,75731811,75732162,75733489,75736050,75736287,75736564,75737321,75737537,75739671,75739879,75740357,75740792,75740981,75742340,75742581,75743712,75748840,75750110,75750679,75750973,75752173,75752445,75754575,75755700,75756428,75756703,75756942,75757199,75757415	75721563,75724782,75727277,75727505,75727855,75728473,75729436,75730504,75730964,75731368,75731973,75732239,75733692,75736154,75736386,75736694,75737444,75737644,75739705,75740071,75740461,75740851,75741005,75742489,75742761,75743861,75749045,75750268,75750860,75751111,75752356,75752577,75754815,75755850,75756617,75756859,75757107,75757310,75757818	0.833333
tibial_nerve_female_adult_51_years	chr8	11795959	11795987	11795986	+	High_confidence	4	4	10	0.857270	2.921928	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.900000
tibial_nerve_female_adult_51_years	chr8	143018389	143018456	143018394	-	High_confidence	8	8	53	4.543533	4.673823	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	143016665	143018437	LY6E-DT|ENST00000518831.1	-	143016665,143018159	143017146,143018437	0.622642
tibial_nerve_female_adult_51_years	chr1	153119468	153119469	153119468	-	RAMPAGE_only	16	17	18	1.543087	3.454822	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112113	153113515	SPRR2F|ENST00000468739.1	-	153112113,153113473	153112752,153113515	0.944444
tibial_nerve_female_adult_51_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	16	19	19	1.628814	3.431624	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
tibial_nerve_female_adult_51_years	chr5	176943365	176943380	176943365	-	RAMPAGE_only	2	2	6	0.514362	2.584963	chr5	176943235	176943320	DNA|hAT-Charlie|Charlie10	-	chr5	176905192	176959431	STRG.53301.6	-	176905192,176906010,176907113,176908522,176911310,176943334,176951473,176955958,176958092	176905492,176906047,176907177,176908652,176911389,176943488,176951577,176956035,176959431	0.833333
tibial_nerve_female_adult_51_years	chr4	40814528	40814559	40814528	-	RAMPAGE_only	8	8	26	2.228903	3.763342	chr4	40814402	40814631	SINE|MIR|MIRc	+	chr4	40810026	40857155	APBB2|NM_001166052.1	-	40810026,40821870,40823643,40825886,40827131,40830462,40856984	40816259,40822050,40823759,40825970,40827219,40830577,40857155	1.000000
tibial_nerve_female_adult_51_years	chr1	12572757	12572857	12572757	-	RAMPAGE_only	4	4	45	3.857716	4.495650	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.955556
tibial_nerve_female_adult_51_years	chr11	100715392	100715415	100715407	+	RAMPAGE_only	9	10	23	1.971722	3.914866	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.652174
tibial_nerve_female_adult_51_years	chr21	29077458	29077501	29077486	+	High_confidence	14	14	30	2.571811	3.892725	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.800000
tibial_nerve_female_adult_51_years	chr11	63479003	63479004	63479003	-	RAMPAGE_only	10	10	10	0.857270	3.321928	chr11	63478801	63478955	SINE|MIR|MIR3	-	chr11	62533983	62556235	AHNAK|ENST00000530285.5	-	62533983,62535002,62535944,62536468,62556187	62534074,62535190,62536098,62536567,62556235	1.000000
tibial_nerve_female_adult_51_years	chr5	77139278	77139279	77139278	+	High_confidence	4	4	7	0.600089	2.521641	chr5	77139300	77139468	LTR|ERVL-MaLR|MLT1H	+	chr5	77139248	77148523	ZBED3-AS1|ENST00000515356.2	+	77139248,77146116,77147651	77139317,77147162,77148523	0.571429
tibial_nerve_female_adult_51_years	chr6	113873326	113873388	113873356	-	High_confidence	4	4	21	1.800268	3.521928	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873351	LINC01268|ENST00000434296.2	-	113868012,113870668,113872993	113870343,113870734,113873351	0.952381
tibial_nerve_female_adult_51_years	chr2	76445409	76445410	76445409	-	High_confidence	19	19	20	1.714541	3.326360	chr2	76445391	76445484	LTR|ERV1|MER66B	+	chr2	76445078	76445410	RN7SKP203|ENST00000363618.1	-	76445078	76445410	0.900000
tibial_nerve_female_adult_51_years	chr1	7913248	7913263	7913248	-	RAMPAGE_only	6	6	18	1.543087	3.503258	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.611111
tibial_nerve_female_adult_51_years	chr12	16353884	16353885	16353884	+	High_confidence	11	11	13	1.114451	2.873141	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.692308
tibial_nerve_female_adult_51_years	chr4	119220954	119220996	119220957	+	RAMPAGE_only	4	4	24	2.057449	3.827910	chr4	119220704	119221185	LTR|ERV1|MER31A	-	chr4	119212586	119221495	USP53|ENST00000514665.1	+	119212586,119217549	119212873,119221495	0.833333
tibial_nerve_female_adult_51_years	chr12	21818179	21818247	21818179	-	RAMPAGE_only	3	3	17	1.457360	2.660130	chr12	21817882	21818136	LINE|L1|L1PA8A	-	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	1.000000
tibial_nerve_female_adult_51_years	chr1	153967486	153967504	153967486	+	High_confidence	11	11	34	2.914719	3.660130	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153974131	STRG.8088.2	+	153967533,153968521,153968929,153969333,153972743,153972971,153973379,153973619,153973871	153967884,153968699,153969176,153969455,153972836,153973263,153973464,153973716,153974131	1.000000
tibial_nerve_female_adult_51_years	chr6	43013392	43013393	43013392	-	High_confidence	14	14	16	1.371633	3.702820	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
tibial_nerve_female_adult_51_years	chr1	33021381	33021417	33021416	-	RAMPAGE_only	14	14	26	2.228903	3.170654	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	1.000000
tibial_nerve_female_adult_51_years	chr14	81192574	81192593	81192592	-	RAMPAGE_only	6	6	20	1.714541	3.646439	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	1.000000
tibial_nerve_female_adult_51_years	chr18	48621520	48621525	48621520	+	RAMPAGE_only	3	3	11	0.942997	3.121928	chr18	48621468	48621857	LINE|L2|L2a	-	chr18	48539987	48711695	CTIF|ENST00000587752.5	+	48539987,48619537,48636613,48663751,48664446,48670668,48711618	48540058,48619745,48636685,48663825,48664551,48670744,48711695	0.545455
tibial_nerve_female_adult_53_years	chr1	150330368	150330399	150330398	+	High_confidence	5	5	13	1.236115	2.565448	chr1	150330375	150330654	SINE|Alu|AluSc8	-	chr1	150329751	150334979	PRPF3|ENST00000467514.1	+	150329751,150332683,150332978,150334934	150330498,150332767,150333199,150334979	1.000000
tibial_nerve_female_adult_53_years	chr1	31694219	31694237	31694219	-	RAMPAGE_only	5	5	10	0.950857	2.725481	chr1	31694205	31694316	SINE|MIR|MIR3	-	chr1	31688860	31697010	COL16A1|ENST00000373667.4	-	31688860,31689049,31689740,31690366,31690528,31691187,31691416,31691597,31692004,31692473,31692597,31692766,31693091,31695185,31695760,31696087,31696962	31688971,31689085,31689851,31690393,31690573,31691226,31691512,31691642,31692067,31692509,31692642,31692808,31693154,31695221,31695787,31696141,31697010	0.900000
tibial_nerve_female_adult_53_years	chr1	16635091	16635116	16635115	-	RAMPAGE_only	6	7	13	1.236115	3.026987	chr1	16635030	16635337	SINE|Alu|AluSx	-	chr1	16618772	16643109	STRG.764.11	-	16618772,16619844,16625774,16626352,16627144,16628467,16630889,16631529,16632274,16633094,16635026,16642766,16643027	16619103,16620024,16626005,16626499,16627289,16628650,16631109,16631613,16632371,16633346,16635168,16642850,16643109	0.769231
tibial_nerve_female_adult_53_years	chr10	44971686	44971687	44971686	+	High_confidence	20	21	24	2.282058	3.663533	chr10	44971649	44971712	SINE|MIR|MIRb	-	chr10	44971793	44993430	RASSF4|ENST00000472561.5	+	44971793,44982520,44984812,44989273,44989669,44990947,44991904,44993268	44971848,44982663,44984970,44989375,44989721,44991069,44992002,44993430	0.541667
tibial_nerve_female_adult_53_years	chr1	156252930	156252932	156252930	-	High_confidence	5	6	9	0.855772	3.000000	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.666667
tibial_nerve_female_adult_53_years	chr4	119217555	119217625	119217569	+	RAMPAGE_only	10	11	45	4.278858	4.990105	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212742	119294638	STRG.36449.1	+	119212742,119214069,119217549,119235289,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337,119293704	119212873,119214222,119217673,119235411,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119293666,119294638	0.711111
tibial_nerve_female_adult_53_years	chr14	100138792	100138811	100138810	+	RAMPAGE_only	13	13	38	3.613258	3.970840	chr14	100138741	100139027	LINE|L2|L2b	-	chr14	100129511	100143863	STRG.101019.3	+	100129511,100132718,100135904,100137577,100137739,100141735,100143700	100129684,100132779,100135968,100137644,100141246,100141793,100143863	1.000000
tibial_nerve_female_adult_53_years	chr1	155611401	155611402	155611401	+	RAMPAGE_only	6	6	8	0.760686	2.521641	chr1	155611412	155611477	LINE|CR1|L3	+	chr1	155610262	155612342	MSTO1|ENST00000483832.5	+	155610262,155610424,155611038,155611215,155611739,155611920,155612181	155610332,155610560,155611108,155611291,155611827,155612100,155612342	0.500000
tibial_nerve_female_adult_53_years	chr12	16353884	16353885	16353884	+	High_confidence	265	276	333	31.663552	5.498816	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.780781
tibial_nerve_female_adult_53_years	chr8	61647042	61647091	61647042	-	High_confidence	5	5	21	1.996801	3.916127	chr8	61646951	61647212	LINE|L2|L2a	+	chr8	61626140	61646872	ASPH|ENST00000519678.5	-	61626140,61633682,61637946,61642887,61643385,61643944,61644599,61646749	61626280,61633727,61638003,61642920,61643433,61644001,61644632,61646872	0.809524
tibial_nerve_female_adult_53_years	chr11	33711384	33711385	33711384	-	RAMPAGE_only	7	7	7	0.665600	2.521641	chr11	33711302	33711405	LINE|L1|L1MB7	+	chr11	33702691	33710283	AL049629.2|ENST00000533181.1	-	33702691,33709905	33702737,33710283	0.857143
tibial_nerve_female_adult_53_years	chr12	26832728	26832767	26832766	-	High_confidence	5	5	13	1.236115	3.546594	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.923077
tibial_nerve_female_adult_53_years	chr2	240033437	240033472	240033471	-	High_confidence	4	4	10	0.950857	3.121928	chr2	240033344	240033532	LINE|L2|L2a	+	chr2	239960740	240033446	STRG.22105.2	-	239960740,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240032892	239961186,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240033446	0.800000
tibial_nerve_female_adult_53_years	chr1	166850216	166850243	166850234	+	RAMPAGE_only	6	6	30	2.852572	4.081728	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166847474	166856344	STRG.7780.4	+	166847474,166848937,166849787	166847592,166849733,166856344	1.000000
tibial_nerve_female_adult_53_years	chr19	54253103	54253128	54253103	-	RAMPAGE_only	5	5	14	1.331200	3.807355	chr19	54253022	54253257	SINE|MIR|MIRb	-	chr19	54250545	54257245	LILRB5|ENST00000621581.1	-	54250545,54255285,54256488	54255037,54255582,54257245	1.000000
tibial_nerve_female_adult_53_years	chr1	11076994	11076995	11076994	-	High_confidence	5	5	7	0.665600	2.521641	chr1	11076987	11077290	SINE|Alu|AluSq2	-	chr1	11068653	11077651	STRG.604.2	-	11068653,11069558,11070899,11072086,11073933,11074230,11076841	11068706,11069730,11070973,11072171,11074008,11074326,11077651	0.714286
tibial_nerve_female_adult_53_years	chr17	50737268	50737313	50737268	+	RAMPAGE_only	2	2	13	1.236115	3.188722	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50719598	50743792	LUC7L3|ENST00000504563.6	+	50719598,50736959,50737286,50740305,50741101,50741656,50743705	50719831,50737026,50737479,50740345,50741246,50741731,50743792	0.692308
tibial_nerve_female_adult_53_years	chr19	11223351	11223352	11223351	-	High_confidence	6	6	6	0.570514	2.584963	chr19	11223304	11223458	LTR|ERVL-MaLR|MLT1J2	+	chr19	11199294	11223338	STRG.117564.2	-	11199294,11200307,11200715,11200908,11201888,11202393,11204080,11204199,11208685,11208910,11211775,11211992,11213175,11214274,11214552,11215386,11215800,11216913,11217230,11221850,11222108,11222734,11222992	11199539,11200469,11200822,11201052,11202125,11202709,11204095,11204331,11208829,11209103,11211876,11212151,11213328,11214409,11214649,11215471,11215927,11217096,11217391,11222020,11222248,11222905,11223338	1.000000
tibial_nerve_female_adult_53_years	chr17	41108251	41108319	41108318	+	High_confidence	30	32	348	33.089838	5.193596	chr17	41107954	41108546	LTR|ERV1|MER4-int	+	chr17	41108293	41110654	STRG.111991.1	+	41108293,41110003	41108379,41110654	0.954023
tibial_nerve_female_adult_53_years	chr6	36540256	36540264	36540256	-	RAMPAGE_only	4	4	9	0.855772	2.947703	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36547454	STRG.49080.2	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540204,36547454	1.000000
tibial_nerve_female_adult_53_years	chr15	50360612	50360635	50360634	+	RAMPAGE_only	4	4	15	1.426286	3.506891	chr15	50360588	50360868	SINE|Alu|AluJb	-	chr15	50355466	50372202	GABPB1-AS1|ENST00000499624.3	+	50355466,50356099	50355545,50372202	0.933333
tibial_nerve_female_adult_53_years	chr1	1655378	1655478	1655409	-	RAMPAGE_only	17	18	65	6.180573	5.538910	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.830769
tibial_nerve_female_adult_53_years	chr19	10555125	10555126	10555125	-	RAMPAGE_only	32	33	39	3.708344	4.387465	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	1.000000
tibial_nerve_female_adult_53_years	chr13	109268950	109269012	109268998	-	High_confidence	49	51	191	18.161376	5.053264	chr13	109265521	109269052	LTR|ERV1|HERVH-int	+	chr13	109234058	109268937	STRG.96918.1	-	109234058,109267733,109268785	109235985,109267840,109268937	0.764398
tibial_nerve_female_adult_53_years	chr3	139344535	139344555	139344535	+	High_confidence	1	1	8	0.760686	2.521641	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.875000
tibial_nerve_female_adult_53_years	chr4	1241437	1241458	1241457	-	High_confidence	4	4	9	0.855772	2.500000	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1235752	1241463	CTBP1|ENST00000515690.1	-	1235752,1238182,1241324	1236316,1238337,1241463	0.888889
tibial_nerve_female_adult_53_years	chr8	56559496	56559497	56559496	-	High_confidence	78	81	109	10.364346	6.226929	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56520118	56559497	LINC00968|ENST00000523786.5	-	56520118,56534945,56559452	56520567,56535009,56559497	0.577982
tibial_nerve_female_adult_53_years	chr5	34244811	34244814	34244813	-	High_confidence	6	9	14	1.331200	3.182006	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.571429
tibial_nerve_female_adult_53_years	chr21	26841236	26841237	26841236	-	High_confidence	14	14	14	1.331200	3.378783	chr21	26841205	26841502	SINE|Alu|AluSz	+	chr21	26836286	26841711	ADAMTS1|ENST00000464589.1	-	26836286,26838438,26839874,26840997	26838278,26839762,26840562,26841711	0.928571
tibial_nerve_female_adult_53_years	chr2	39453858	39453919	39453918	+	High_confidence	3	3	12	1.141029	3.251629	chr2	39453626	39453953	SINE|Alu|AluJo	-	chr2	39453921	39624356	AC007388.1|ENST00000446698.5	+	39453921,39454296,39516413,39518582,39624098	39453931,39454365,39516541,39518710,39624356	0.583333
tibial_nerve_female_adult_53_years	chr17	47067487	47067513	47067498	-	High_confidence	49	51	202	19.207320	5.438934	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.960396
tibial_nerve_female_adult_53_years	chr17	69147647	69147655	69147647	-	RAMPAGE_only	30	31	51	4.849373	4.804491	chr17	69147555	69147884	LTR|ERVL-MaLR|MSTB1	-	chr17	69147213	69150062	ABCA10|ENST00000522787.5	-	69147213,69149032,69149983	69147440,69149088,69150062	0.843137
tibial_nerve_female_adult_53_years	chr22	23705439	23705440	23705439	-	RAMPAGE_only	6	7	8	0.760686	2.500000	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	1.000000
tibial_nerve_female_adult_53_years	chr21	36005319	36005320	36005319	+	High_confidence	7	7	10	0.950857	3.121928	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	1.000000
tibial_nerve_female_adult_53_years	chr14	50756882	50756943	50756942	-	RAMPAGE_only	6	7	27	2.567315	3.782122	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.888889
tibial_nerve_female_adult_53_years	chr5	78388848	78388870	78388866	+	RAMPAGE_only	3	3	8	0.760686	3.000000	chr5	78388798	78388903	LINE|CR1|L3	-	chr5	78360804	78416588	SCAMP1|ENST00000510030.2	+	78360804,78388836,78415519,78416540	78361056,78388914,78415618,78416588	0.625000
tibial_nerve_female_adult_53_years	chr18	23149808	23149809	23149808	+	High_confidence	9	9	9	0.855772	2.947703	chr18	23149657	23149836	DNA|hAT-Charlie|MER5A	+	chr18	23149740	23260467	STRG.115007.3	+	23149740,23188837,23194447,23213976,23234607,23235894,23237141,23252959,23253728,23257226	23149975,23188909,23194540,23214054,23234704,23236051,23237245,23253066,23253936,23260467	1.000000
tibial_nerve_female_adult_53_years	chr12	68624654	68624705	68624704	+	RAMPAGE_only	3	3	13	1.236115	3.180833	chr12	68624506	68624834	SINE|Alu|AluSz	+	chr12	68610928	68640923	STRG.90794.12	+	68610928,68624674	68611043,68640923	0.923077
tibial_nerve_female_adult_53_years	chr12	57532041	57532084	57532041	-	RAMPAGE_only	6	6	16	1.521372	2.866248	chr12	57531960	57532134	LINE|RTE-BovB|MamRTE1	+	chr12	57530616	57547120	DCTN2|ENST00000549394.5	-	57530616,57532014,57532212,57532571,57532732,57532983,57533237,57533952,57534291,57535055,57535483,57535748,57538252,57541363,57546027,57547027	57530775,57532106,57532315,57532643,57532810,57533022,57533303,57534097,57534452,57535154,57535545,57535845,57538347,57541372,57546096,57547120	0.875000
tibial_nerve_female_adult_53_years	chr8	124673331	124673342	124673331	-	High_confidence	5	5	9	0.855772	2.750000	chr8	124673233	124673401	SINE|Alu|AluSx1	+	chr8	124585086	124673513	MTSS1|ENST00000529463.5	-	124585086,124589619,124591150,124673196	124585161,124589711,124591235,124673513	0.555556
tibial_nerve_female_adult_53_years	chr1	21876237	21876238	21876237	-	RAMPAGE_only	18	18	27	2.567315	3.753270	chr1	21876092	21876241	LINE|L2|L2c	+	chr1	21822231	21937297	HSPG2|NM_005529.6	-	21822231,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174,21937154	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896310,21937297	0.925926
tibial_nerve_female_adult_53_years	chr2	9422817	9422831	9422817	-	High_confidence	7	7	14	1.331200	3.546594	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NM_001319068.1	-	9405680,9407448,9408112,9412268,9414177,9418625,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9422660	0.928571
tibial_nerve_female_adult_53_years	chr3	129488291	129488347	129488291	+	High_confidence	7	7	27	2.567315	4.134336	chr3	129488271	129488306	SINE|5S-Deu-L2|AmnSINE1	+	chr3	129487505	129520355	IFT122|ENST00000511425.5	+	129487505,129488256,129492140,129499901,129502710,129504318,129506408,129507667,129512311,129514388,129515487,129517468,129519106,129519567,129520175	129487927,129488397,129492194,129500068,129502882,129504421,129506549,129507762,129512412,129514554,129515599,129517594,129519186,129519732,129520355	0.703704
tibial_nerve_female_adult_53_years	chrX	5726116	5726325	5726324	-	High_confidence	43	45	167	15.879319	5.833266	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.646707
tibial_nerve_female_adult_53_years	chr19	46733283	46733284	46733283	-	High_confidence	13	13	17	1.616458	3.452820	chr19	46733275	46733512	LINE|L1|L1MC	+	chr19	46727906	46733449	STRN4|ENST00000594847.6	-	46727906,46728617,46730731,46733038	46728007,46728777,46730873,46733449	0.941176
tibial_nerve_female_adult_53_years	chr7	107580245	107580267	107580264	+	High_confidence	100	100	517	49.159328	6.534595	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.967118
tibial_nerve_female_adult_53_years	chr8	144853500	144853556	144853555	-	High_confidence	4	5	18	1.711543	3.969816	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	0.888889
tibial_nerve_female_adult_53_years	chr6	89656011	89656046	89656045	-	High_confidence	3	3	7	0.665600	2.521641	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642652	89657005	STRG.51212.3	-	89642652,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763	89644407,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89657005	1.000000
tibial_nerve_female_adult_53_years	chr1	27881303	27881314	27881303	+	High_confidence	4	4	14	1.331200	2.842371	chr1	27881168	27881465	SINE|Alu|AluY	+	chr1	27881168	27881690	STRG.1491.1	+	27881168	27881690	0.928571
tibial_nerve_female_adult_53_years	chr15	75693080	75693108	75693080	-	RAMPAGE_only	5	5	17	1.616458	3.690117	chr15	75692930	75693052	SINE|MIR|MIR3	-	chr15	75674321	75712848	CSPG4|NM_001897.4	-	75674321,75677702,75682292,75682606,75682842,75684735,75685218,75687275,75693069,75712667	75677384,75677886,75682459,75682741,75683041,75684912,75685701,75690812,75693233,75712848	1.000000
tibial_nerve_female_adult_53_years	chr17	59619894	59619929	59619894	+	High_confidence	286	313	914	86.908367	5.431289	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.958425
tibial_nerve_female_adult_53_years	chr3	188947170	188947237	188947231	+	High_confidence	3	3	10	0.950857	2.921928	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.500000
tibial_nerve_female_adult_53_years	chr5	180830991	180831041	180831009	+	High_confidence	3	4	19	1.806629	3.836592	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.789474
tibial_nerve_female_adult_53_years	chr17	13931126	13931162	13931161	-	RAMPAGE_only	5	5	22	2.091886	3.630413	chr17	13931030	13931624	LTR|ERVL-MaLR|MLT1L	+	chr17	13776831	13892839	COX10-AS1|ENST00000577798.6	-	13776831,13790268,13865078,13880301,13892724	13777349,13790313,13865266,13880371,13892839	0.909091
tibial_nerve_female_adult_53_years	chr19	35115816	35115845	35115816	+	High_confidence	6	6	27	2.567315	4.356558	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.851852
tibial_nerve_female_adult_53_years	chr4	1241488	1241510	1241488	-	High_confidence	11	11	18	1.711543	3.683542	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1235752	1241463	CTBP1|ENST00000515690.1	-	1235752,1238182,1241324	1236316,1238337,1241463	0.833333
tibial_nerve_female_adult_53_years	chr19	39459894	39459895	39459894	+	RAMPAGE_only	16	16	16	1.521372	3.500000	chr19	39459842	39459908	LTR|ERV1|LTR78B	-	chr19	39457700	39466720	SUPT5H|ENST00000593727.1	+	39457700,39458293,39458817,39459004,39459183,39459558,39459891,39466479,39466674	39457740,39458305,39458887,39459073,39459249,39459589,39459960,39466569,39466720	0.625000
tibial_nerve_female_adult_53_years	chr9	19126423	19126437	19126423	-	RAMPAGE_only	9	10	16	1.521372	3.375000	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19056489	19127475	STRG.69964.1	-	19056489,19060087,19063007,19063513,19070218,19076601,19078175,19082872,19086733,19087090,19089411,19093170,19094316,19096673,19116358,19118320,19119649,19120879,19123564,19126113,19126396,19127418	19059001,19060223,19063193,19063580,19070300,19076704,19078302,19083043,19086782,19087156,19089559,19093303,19094395,19096769,19116649,19118455,19119831,19121165,19123647,19126309,19126448,19127475	1.000000
tibial_nerve_female_adult_53_years	chr10	17386935	17386951	17386950	+	High_confidence	3	3	8	0.760686	2.521641	chr10	17386606	17386994	LTR|ERV1|MER48	-	chr10	17386950	17410631	ST8SIA6-AS1|ENST00000377597.6	+	17386950,17399104,17407967,17409320	17387075,17399202,17408244,17410631	0.875000
tibial_nerve_female_adult_53_years	chrX	53585016	53585018	53585017	-	RAMPAGE_only	8	9	13	1.236115	3.188722	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53550510	53609000	STRG.129135.5	-	53550510,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602563,53603367,53604588,53607522,53608851	53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53609000	0.923077
tibial_nerve_female_adult_53_years	chr11	64807587	64807613	64807612	-	RAMPAGE_only	7	7	13	1.236115	3.418296	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64804333	64810132	MEN1|ENST00000377313.5	-	64804333,64805033,64805634,64806231,64807010,64807178,64807551,64807890,64809649	64804816,64805198,64805770,64806368,64807098,64807219,64807680,64808099,64810132	0.846154
tibial_nerve_female_adult_53_years	chr3	48979425	48979436	48979435	+	RAMPAGE_only	7	7	14	1.331200	2.815072	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.857143
tibial_nerve_female_adult_53_years	chr6	39865071	39865072	39865071	+	High_confidence	8	8	8	0.760686	2.750000	chr6	39865016	39865115	DNA|TcMar-Tigger|Tigger19b	-	chr6	39864306	39904865	STRG.48893.6	+	39864306,39864979,39867509,39868822,39870339,39871505,39873237,39875329,39878202,39878403,39879177,39883961,39887485,39888678,39891340,39891633,39896811,39897174,39898876,39900076,39901301,39901812	39864507,39865074,39867843,39868993,39870443,39871572,39873355,39875468,39878261,39878588,39879477,39884069,39887592,39888763,39891447,39891722,39896980,39897282,39898937,39900208,39901472,39904865	0.875000
tibial_nerve_female_adult_53_years	chr2	61516305	61516320	61516313	-	RAMPAGE_only	13	13	39	3.708344	3.349916	chr2	61516163	61516335	SINE|Alu|AluSq	+	chr2	61516032	61526518	STRG.14364.10	-	61516032,61522610,61525269,61526419	61520475,61522683,61525333,61526518	0.897436
tibial_nerve_female_adult_53_years	chr12	53173861	53173892	53173880	-	High_confidence	3	3	10	0.950857	2.725481	chr12	53173811	53174022	LINE|L1|L1MB7	-	chr12	53160276	53173919	STRG.90010.4	-	53160276,53160762,53161272,53170071,53170422,53171325,53171881,53172345,53172521,53173344,53173727	53160319,53160844,53161389,53170126,53170502,53171441,53171988,53172436,53172648,53173476,53173919	0.900000
tibial_nerve_female_adult_53_years	chr14	77076188	77076194	77076188	-	High_confidence	33	33	83	7.892116	5.606673	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77073964	77076314	STRG.100044.2	-	77073964,77076104	77074598,77076314	0.662651
tibial_nerve_female_adult_53_years	chr1	1721636	1721705	1721636	-	High_confidence	10	10	44	4.183773	4.972549	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.659091
tibial_nerve_female_adult_53_years	chr17	67920095	67920114	67920113	+	High_confidence	8	8	16	1.521372	3.875000	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	1.000000
tibial_nerve_female_adult_53_years	chr17	1704990	1705002	1705001	-	RAMPAGE_only	8	9	16	1.521372	3.189898	chr17	1704709	1705001	SINE|Alu|AluSc8	-	chr17	1702789	1710368	TLCD2|NM_001164407.1	-	1702789,1709498,1709803,1710066	1708222,1709581,1709886,1710368	0.875000
tibial_nerve_female_adult_53_years	chr20	36911567	36911603	36911595	-	RAMPAGE_only	4	4	12	1.141029	3.095795	chr20	36911497	36911692	SINE|MIR|MIRb	-	chr20	36904021	36927190	SAMHD1|ENST00000644688.1	-	36904021,36905363,36911217,36912460,36916721,36916948,36919363,36927181	36904249,36905503,36911333,36912552,36916830,36917049,36919519,36927190	0.500000
tibial_nerve_female_adult_53_years	chrX	5726383	5726387	5726386	-	High_confidence	3	3	7	0.665600	2.584963	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.714286
tibial_nerve_female_adult_53_years	chr1	150457343	150457366	150457343	+	RAMPAGE_only	3	3	9	0.855772	2.641604	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150364710	150473556	RPRD2|ENST00000369068.4	+	150364710,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150364919,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	1.000000
tibial_nerve_female_adult_53_years	chr11	46553244	46553245	46553244	-	High_confidence	18	18	20	1.901715	3.536887	chr11	46552949	46553242	SINE|Alu|AluSx1	-	chr11	46552844	46554003	STRG.83106.1	-	46552844	46554003	0.900000
tibial_nerve_female_adult_53_years	chr19	44722856	44722873	44722856	-	RAMPAGE_only	2	2	11	1.045943	2.521928	chr19	44722780	44723070	LINE|L2|L2b	-	chr19	44632198	44718631	AC243964.2|ENST00000590796.1	-	44632198,44699083,44715949,44718449	44632619,44699177,44716081,44718631	0.909091
tibial_nerve_female_adult_53_years	chr22	49925478	49925504	49925503	+	RAMPAGE_only	4	4	9	0.855772	2.500000	chr22	49925493	49925572	LINE|CR1|L3b	+	chr22	49923209	49927528	CRELD2|ENST00000487969.1	+	49923209,49927254	49925557,49927528	0.777778
tibial_nerve_female_adult_53_years	chr3	134485443	134485501	134485470	-	High_confidence	3	3	28	2.662401	4.208966	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.714286
tibial_nerve_female_adult_53_years	chr1	40769278	40769302	40769278	+	High_confidence	5	5	10	0.950857	2.721928	chr1	40769217	40769281	SINE|MIR|MIRb	-	chr1	40768729	40771601	NFYC|ENST00000496608.1	+	40768729,40770322	40769415,40771601	0.900000
tibial_nerve_female_adult_53_years	chr22	23700730	23700737	23700736	-	RAMPAGE_only	13	15	21	1.996801	3.916127	chr22	23700074	23701270	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	1.000000
tibial_nerve_female_adult_53_years	chr12	7111558	7111559	7111558	+	RAMPAGE_only	10	10	15	1.426286	3.589898	chr12	7111556	7111739	LINE|L1|L1MEf	+	chr12	7108570	7121027	C1RL-AS1|ENST00000382215.3	+	7108570,7110297,7111024,7112006,7115129,7118898,7119499,7120505	7108947,7110572,7111606,7112064,7115219,7119026,7119553,7121027	0.733333
tibial_nerve_female_adult_53_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	119	138	151	14.357947	5.816412	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54227060	54281637	STRG.3209.3	-	54227060,54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54277188	54227160,54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54251860,54281637	0.913907
tibial_nerve_female_adult_53_years	chr11	107441579	107441593	107441592	-	RAMPAGE_only	6	6	11	1.045943	3.095795	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	1.000000
tibial_nerve_female_adult_53_years	chr16	2759957	2760018	2759957	+	High_confidence	8	8	44	4.183773	4.469999	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.704545
tibial_nerve_female_adult_53_years	chr4	73144770	73144800	73144770	-	RAMPAGE_only	4	4	9	0.855772	2.750000	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.777778
tibial_nerve_female_adult_53_years	chr17	42662964	42662965	42662964	+	RAMPAGE_only	11	12	15	1.426286	3.378783	chr17	42662805	42662965	LTR|ERVL|MER21A	+	chr17	42659306	42666822	TUBG2|ENST00000588870.1	+	42659306,42660148,42660638,42663376,42665475,42665677,42666086,42666322,42666602	42659946,42660316,42660707,42663503,42665562,42665827,42666239,42666484,42666822	0.866667
tibial_nerve_female_adult_53_years	chr5	109383427	109383460	109383459	-	High_confidence	4	4	22	2.091886	4.004886	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
tibial_nerve_female_adult_53_years	chr12	15624446	15624461	15624460	-	RAMPAGE_only	7	7	14	1.331200	3.378783	chr12	15624456	15624793	LINE|L2|L2a	+	chr12	15623219	15631762	EPS8|ENST00000545610.1	-	15623219,15624226,15631441	15623287,15624407,15631762	0.857143
tibial_nerve_female_adult_53_years	chr1	46804462	46804474	46804462	+	RAMPAGE_only	4	4	12	1.141029	2.845351	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.833333
tibial_nerve_female_adult_53_years	chr7	111413972	111414006	111413972	-	High_confidence	16	17	71	6.751088	5.418534	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	111413292	111414434	STRG.61087.1	-	111413292	111414434	0.605634
tibial_nerve_female_adult_53_years	chr1	196404228	196404273	196404272	-	RAMPAGE_only	6	8	37	3.518172	4.707715	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225782	196465387	KCNT2|ENST00000498426.5	-	196225782,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196317173,196331155,196333846,196340340,196342078,196373139,196398562,196423049,196425851,196428104,196429576,196465292	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196317269,196331261,196334060,196340570,196342228,196373248,196398671,196423113,196425988,196428269,196429757,196465387	0.729730
tibial_nerve_female_adult_53_years	chr12	122274041	122274073	122274041	-	High_confidence	5	6	23	2.186972	3.732159	chr12	122273741	122274010	SINE|Alu|AluSz	-	chr12	122272833	122273635	STRG.93578.12	-	122272833,122273499	122273100,122273635	0.826087
tibial_nerve_female_adult_53_years	chr22	22286466	22286486	22286472	-	High_confidence	7	7	38	3.613258	3.997670	chr22	22286402	22286703	LINE|L1|HAL1b	-	chr22	22283927	22287220	AC245060.5|ENST00000610778.1	-	22283927	22287220	1.000000
tibial_nerve_female_adult_53_years	chr6	35677372	35677409	35677372	-	RAMPAGE_only	81	82	159	15.118633	5.376401	chr6	35677058	35677372	SINE|Alu|AluY	-	chr6	35677042	35701538	STRG.49028.7	-	35677042,35701475	35677305,35701538	0.842767
tibial_nerve_female_adult_53_years	chr3	16228559	16228595	16228559	+	RAMPAGE_only	43	45	142	13.502175	4.362903	chr3	16228359	16228663	SINE|Alu|AluSx	+	chr3	16219399	16229745	GALNT15|ENST00000617544.3	+	16219399,16219909,16222614,16227353,16227444	16219534,16220014,16222758,16227443,16229745	0.957746
tibial_nerve_female_adult_53_years	chr11	94461297	94461307	94461297	-	RAMPAGE_only	3	3	8	0.760686	2.500000	chr11	94461258	94461448	DNA|hAT-Charlie|Charlie1a	+	chr11	94445749	94462629	STRG.85298.7	-	94445749,94447218,94456275,94459407,94460935	94445893,94447438,94456338,94459581,94462629	0.875000
tibial_nerve_female_adult_53_years	chr19	49539145	49539152	49539151	+	RAMPAGE_only	4	5	11	1.045943	2.646439	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49528543	49543633	STRG.120112.2	+	49528543,49534192,49537032,49539118,49542552,49543105	49528714,49534301,49537205,49539179,49542752,49543633	0.818182
tibial_nerve_female_adult_53_years	chr5	170267389	170267415	170267414	-	High_confidence	2	2	7	0.665600	2.584963	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170256556	170267327	LCP2|ENST00000520344.1	-	170256556,170258036,170258865,170261106,170262634,170262841,170262966,170267008	170256575,170258166,170258878,170261137,170262742,170262861,170262992,170267327	0.857143
tibial_nerve_female_adult_53_years	chr22	17101913	17101937	17101936	+	High_confidence	4	4	8	0.760686	2.750000	chr22	17101933	17101968	LINE|Penelope|Penelope1_Vert	+	chr22	17101650	17112050	STRG.125241.5	+	17101650,17102138,17103493,17104725,17105590,17107726,17108306	17102043,17102302,17103577,17104810,17105954,17107768,17112050	1.000000
tibial_nerve_female_adult_53_years	chr4	79245087	79245093	79245087	+	RAMPAGE_only	10	10	24	2.282058	3.675311	chr4	79244642	79246390	Retroposon|SVA|SVA_B	+	chr4	79211680	79245532	LINC01088|ENST00000437737.3	+	79211680,79244683	79211804,79245532	0.666667
tibial_nerve_female_adult_53_years	chr1	70947322	70947350	70947349	+	High_confidence	9	9	15	1.426286	3.373557	chr1	70947197	70947555	LTR|ERVL-MaLR|THE1A	+	chr1	70947358	70965225	STRG.4463.1	+	70947358,70961054,70964845	70947475,70961258,70965225	0.666667
tibial_nerve_female_adult_53_years	chr12	30680486	30680493	30680492	-	RAMPAGE_only	6	6	12	1.141029	3.084963	chr12	30680406	30680446	LINE|L2|L2c	-	chr12	30628980	30677244	IPO8|NM_001190995.1	-	30628980,30631894,30634082,30636981,30639514,30649136,30652191,30652966,30656683,30661140,30662326,30663488,30665219,30665728,30666174,30669182,30670961,30673989,30674658,30676497,30676895	30630957,30632011,30634286,30637187,30639735,30649232,30652289,30653092,30656750,30661266,30662487,30663654,30665309,30665845,30666251,30669282,30671096,30674074,30674753,30676587,30677244	0.916667
tibial_nerve_female_adult_53_years	chr9	72363527	72363574	72363573	-	High_confidence	21	21	84	7.987202	4.741089	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72356945	72364346	STRG.71947.12	-	72356945,72359417	72357056,72364346	1.000000
tibial_nerve_female_adult_53_years	chr7	30563938	30563948	30563938	-	High_confidence	3	3	9	0.855772	2.750000	chr7	30563654	30564076	LTR|ERVL-MaLR|MLT1C	-	chr7	30523974	30563998	GARS-DT|ENST00000580902.5	-	30523974,30550635,30563730	30524486,30550781,30563998	0.555556
tibial_nerve_female_adult_53_years	chr14	38948236	38948246	38948245	-	High_confidence	12	12	26	2.472229	4.392747	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	0.961538
tibial_nerve_female_adult_53_years	chr4	4269594	4269610	4269609	-	High_confidence	4	4	9	0.855772	2.503258	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.777778
tibial_nerve_female_adult_53_years	chr21	29077458	29077487	29077486	+	High_confidence	4	4	10	0.950857	2.725481	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.900000
tibial_nerve_female_adult_53_years	chr3	47041465	47041466	47041465	-	RAMPAGE_only	4	4	7	0.665600	2.584963	chr3	47041366	47041501	SINE|Alu|AluJr	+	chr3	47016688	47123535	SETD2|ENST00000445387.5	-	47016688,47017637,47019759,47037665,47042560,47046486,47056820,47062162,47064554,47067069,47083719,47086194,47088112,47097954,47101457,47103345,47105996,47113875,47116622,47120181	47017254,47017739,47019840,47037777,47042700,47046621,47057490,47062346,47064630,47067118,47084382,47086314,47088247,47098081,47101555,47103423,47106120,47114004,47116754,47123535	0.714286
tibial_nerve_female_adult_53_years	chr21	44769478	44769545	44769508	-	RAMPAGE_only	7	7	52	4.944459	4.772273	chr21	44769378	44769677	SINE|Alu|AluY	-	chr21	44769039	44775436	UBE2G2|ENST00000481546.1	-	44769039,44773546	44771489,44775436	0.980769
tibial_nerve_female_adult_53_years	chr17	35367000	35367030	35367029	-	High_confidence	6	6	11	1.045943	2.921928	chr17	35366789	35367087	SINE|Alu|AluJb	+	chr17	35363621	35367294	SLFN11|ENST00000589562.1	-	35363621,35366946	35363826,35367294	0.818182
tibial_nerve_female_adult_53_years	chr7	100349719	100349748	100349747	+	RAMPAGE_only	3	3	11	1.045943	2.845351	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100338176	100350158	STAG3L5P|ENST00000493499.1	+	100338176,100338772,100345864,100349716	100338264,100338889,100345968,100350158	0.727273
tibial_nerve_female_adult_53_years	chr15	34588448	34588451	34588450	-	High_confidence	7	10	13	1.236115	3.392747	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.692308
tibial_nerve_female_adult_53_years	chr5	109383499	109383504	109383503	-	High_confidence	4	5	11	1.045943	3.121928	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.909091
tibial_nerve_female_adult_53_years	chr6	35680233	35680278	35680264	-	RAMPAGE_only	11	11	64	6.085487	3.814617	chr6	35680148	35680449	SINE|Alu|AluJr	+	chr6	35573589	35688937	STRG.49028.1	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35646729,35678957	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35646366,35646850,35688937	0.984375
tibial_nerve_female_adult_53_years	chr14	77736987	77737051	77736987	-	High_confidence	4	4	16	1.521372	2.872906	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.937500
tibial_nerve_female_adult_53_years	chr17	70947788	70947809	70947798	-	RAMPAGE_only	2	2	8	0.760686	2.521641	chr17	70947384	70948869	LINE|L1|L1PB1	+	chr17	70778603	70779230	AC007423.1|ENST00000605009.1	-	70778603	70779230	0.750000
tibial_nerve_female_adult_53_years	chr21	46256892	46256911	46256892	-	High_confidence	4	4	8	0.760686	3.000000	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46243042	46256986	STRG.125271.12	-	46243042,46244806,46246306,46251528,46254391,46256788	46243722,46245197,46246886,46251682,46254844,46256986	0.750000
tibial_nerve_female_adult_53_years	chr10	11196853	11196884	11196883	+	High_confidence	141	142	542	51.536471	5.214784	chr10	11196677	11196988	SINE|Alu|AluSg	+	chr10	11196844	11197104	STRG.75531.1	+	11196844	11197104	0.723247
tibial_nerve_female_adult_53_years	chr2	3536827	3536919	3536918	-	High_confidence	7	7	28	2.662401	4.450212	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.821429
tibial_nerve_female_adult_53_years	chr12	7111446	7111505	7111504	+	RAMPAGE_only	12	12	41	3.898515	4.560667	chr12	7111409	7111556	SINE|Alu|AluJb	+	chr12	7108570	7121027	C1RL-AS1|ENST00000382215.3	+	7108570,7110297,7111024,7112006,7115129,7118898,7119499,7120505	7108947,7110572,7111606,7112064,7115219,7119026,7119553,7121027	0.902439
tibial_nerve_female_adult_53_years	chr9	121313960	121314021	121314002	+	RAMPAGE_only	35	36	143	13.597261	5.351059	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.986014
tibial_nerve_female_adult_53_years	chr17	64764529	64764570	64764534	-	RAMPAGE_only	9	9	19	1.806629	3.747413	chr17	64764423	64764603	SINE|Alu|AluSx1	+	chr17	64761911	64762710	BPTFP1|ENST00000579209.1	-	64761911,64762354	64762047,64762710	0.947368
tibial_nerve_female_adult_53_years	chr15	57451564	57451569	57451564	+	RAMPAGE_only	5	5	12	1.141029	2.550341	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.916667
tibial_nerve_female_adult_53_years	chr19	18938369	18938395	18938369	-	High_confidence	4	4	14	1.331200	3.546594	chr19	18938201	18938361	SINE|MIR|MIR3	-	chr19	18929438	18938982	HOMER3|ENST00000594439.5	-	18929438,18931324,18931508,18931975,18932923,18938352,18938727,18938968	18929634,18931411,18931625,18932132,18933045,18938484,18938884,18938982	0.785714
tibial_nerve_female_adult_53_years	chr10	45594312	45594362	45594315	-	High_confidence	3	3	15	1.426286	3.773557	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45461386	45594491	MARCH8|ENST00000453980.3	-	45461386,45464238,45489366,45533109,45553111,45594234	45461411,45464327,45489417,45533289,45553204,45594491	1.000000
tibial_nerve_female_adult_53_years	chr1	89272843	89272871	89272843	-	High_confidence	2	2	7	0.665600	2.584963	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89262697	89272804	GBP5|ENST00000443807.1	-	89262697,89263735,89264685,89266345,89266956,89267416,89268728,89269365	89262785,89263948,89264966,89266588,89267153,89267526,89268856,89272804	0.857143
tibial_nerve_female_adult_53_years	chr12	131371482	131371505	131371482	-	High_confidence	2	2	7	0.665600	2.807355	chr12	131371471	131371655	LTR|ERVL|LTR33A	-	chr12	131352658	131371449	STRG.93760.1	-	131352658,131353686,131371390	131352999,131353783,131371449	0.714286
tibial_nerve_female_adult_53_years	chr12	2798753	2798817	2798816	+	High_confidence	6	6	20	1.901715	3.984184	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.850000
tibial_nerve_female_adult_53_years	chr14	81192577	81192682	81192644	-	RAMPAGE_only	7	7	45	4.278858	4.730416	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	1.000000
tibial_nerve_female_adult_53_years	chr5	140655986	140655989	140655988	+	RAMPAGE_only	6	9	10	0.950857	2.947703	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.800000
tibial_nerve_female_adult_53_years	chr7	6590285	6590325	6590285	+	High_confidence	4	4	21	1.996801	3.536887	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.523810
tibial_nerve_female_adult_53_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	8	9	10	0.950857	3.321928	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.700000
tibial_nerve_female_adult_53_years	chr11	62600241	62600244	62600241	-	High_confidence	10	10	18	1.711543	3.080501	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.944444
tibial_nerve_female_adult_53_years	chr6	144533090	144533106	144533090	+	RAMPAGE_only	20	20	35	3.328001	4.535849	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.914286
tibial_nerve_female_adult_53_years	chr21	13898947	13898959	13898947	-	RAMPAGE_only	5	6	11	1.045943	2.721928	chr21	13898559	13899880	LTR|ERVL-MaLR|MSTA-int	-	chr21	13898451	13900511	STRG.123253.2	-	13898451	13900511	0.818182
tibial_nerve_female_adult_53_years	chr13	81020681	81020698	81020681	+	RAMPAGE_only	3	3	8	0.760686	2.750000	chr13	81020592	81021344	LINE|L1|L1PA15-16	+	chr13	81018390	81044442	LINC00377|NR_125770.1	+	81018390,81020605,81043670,81043966	81018460,81020806,81043850,81044442	1.000000
tibial_nerve_female_adult_53_years	chr20	51627601	51627611	51627610	-	RAMPAGE_only	5	5	10	0.950857	2.947703	chr20	51627270	51627593	LINE|L2|L2a	-	chr20	51596513	51768328	ATP9A|ENST00000311637.9	-	51596513,51604816,51607526,51608517,51610100,51613676,51617489,51618661,51618953,51622073,51625191,51627599,51628979,51639342,51656937,51669996,51671114,51674152,51676131,51712965,51725818,51729833,51768301	51601347,51605020,51607584,51608626,51610165,51613832,51617554,51618806,51619043,51622172,51625362,51627683,51629072,51639504,51657150,51670109,51671257,51674313,51676208,51713074,51725932,51729978,51768328	0.900000
tibial_nerve_female_adult_53_years	chr1	54277569	54277604	54277603	-	RAMPAGE_only	3	3	10	0.950857	2.921928	chr1	54277464	54277668	SINE|MIR|MIR1_Amn	+	chr1	54227060	54281637	STRG.3209.3	-	54227060,54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54277188	54227160,54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54251860,54281637	1.000000
tibial_nerve_female_adult_53_years	chr2	240022172	240022173	240022172	-	RAMPAGE_only	15	15	15	1.426286	3.323231	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
tibial_nerve_female_adult_53_years	chr11	65206298	65206317	65206316	+	High_confidence	3	3	8	0.760686	2.521641	chr11	65206214	65206363	SINE|MIR|MIR	-	chr11	65206256	65209383	CAPN1|ENST00000525013.1	+	65206256,65206779,65208054,65208204,65209322	65206674,65206819,65208120,65208262,65209383	0.750000
tibial_nerve_female_adult_53_years	chr19	51886821	51886827	51886821	-	High_confidence	4	4	8	0.760686	2.750000	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51880697	51886465	ZNF577|ENST00000639183.1	-	51880697,51886115	51880877,51886465	0.875000
tibial_nerve_female_adult_53_years	chr8	142344379	142344380	142344379	-	RAMPAGE_only	9	9	13	1.236115	3.700440	chr8	142344146	142344350	DNA|DNA|UCON8	-	chr8	142212166	142354763	TSNARE1|ENST00000520166.5	-	142212166,142229472,142274780,142284412,142300485,142314383,142315002,142318543,142330900,142331753,142343965,142345742,142354636	142212313,142229579,142274863,142284485,142300647,142314440,142315092,142318634,142330970,142331831,142344472,142345892,142354763	1.000000
tibial_nerve_female_adult_53_years	chr22	36266619	36266620	36266619	+	RAMPAGE_only	5	5	8	0.760686	2.807355	chr22	36266623	36266924	SINE|Alu|AluY	+	chr22	36253140	36267083	APOL1|ENST00000397279.8	+	36253140,36254936,36257082,36257318,36261595,36265150,36266888	36253219,36254999,36257136,36257407,36261722,36266107,36267083	0.500000
tibial_nerve_female_adult_53_years	chr1	65052811	65052826	65052825	-	High_confidence	10	10	16	1.521372	3.189898	chr1	65052796	65053050	SINE|Alu|AluSx	+	chr1	65044287	65052787	STRG.4064.2	-	65044287	65052787	0.875000
tibial_nerve_female_adult_53_years	chr1	23417917	23417997	23417917	-	RAMPAGE_only	19	19	58	5.514973	5.245743	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23408559	23419236	TCEA3|ENST00000374602.2	-	23408559,23417248,23417903,23419076	23408726,23417390,23418009,23419236	0.500000
tibial_nerve_female_adult_53_years	chr17	63691770	63691840	63691839	+	RAMPAGE_only	3	3	16	1.521372	3.640224	chr17	63691879	63692027	SINE|MIR|MIRc	+	chr17	63666643	63693874	STRG.113333.5	+	63666643,63681765,63685516,63688526,63688788,63689543,63691101,63691732,63692241,63693548	63667060,63681899,63685590,63688594,63688881,63690412,63691233,63691862,63692419,63693874	0.875000
tibial_nerve_female_adult_53_years	chr4	2867814	2867836	2867814	+	High_confidence	5	5	10	0.950857	3.169925	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.900000
tibial_nerve_female_adult_53_years	chr4	851139	851196	851139	-	High_confidence	16	17	27	2.567315	4.254525	chr4	851102	851393	SINE|Alu|AluJb	-	chr4	849275	851673	GAK|ENST00000502799.1	-	849275,849891	849774,851673	1.000000
tibial_nerve_female_adult_53_years	chr12	55695169	55695186	55695169	-	RAMPAGE_only	2	2	7	0.665600	2.521641	chr12	55695123	55695326	SINE|MIR|MIRb	+	chr12	55694649	55696416	ITGA7|ENST00000557058.1	-	55694649,55694777,55696282	55694695,55695637,55696416	0.571429
tibial_nerve_female_adult_53_years	chr3	98733184	98733204	98733184	+	High_confidence	6	6	12	1.141029	2.663533	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.916667
tibial_nerve_female_adult_53_years	chr13	81008019	81008057	81008056	+	RAMPAGE_only	4	5	8	0.760686	2.500000	chr13	81007839	81008210	LTR|ERVL-MaLR|THE1D	+	chr13	80902428	81009325	STRG.96264.3	+	80902428,80909202,81008056,81008516,81009264	80902558,80909300,81008127,81008696,81009325	0.875000
tibial_nerve_female_adult_53_years	chr11	119046591	119046643	119046603	-	RAMPAGE_only	12	15	56	5.324801	4.571736	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119044310	119057105	STRG.86323.2	-	119044310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049017,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119057019	119045654,119045834,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049203,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119057105	0.982143
tibial_nerve_female_adult_53_years	chr16	68267936	68267937	68267936	+	RAMPAGE_only	16	16	16	1.521372	3.875000	chr16	68267617	68268452	LTR|ERVL|MER21B	+	chr16	68266601	68275001	SLC7A6|ENST00000563146.1	+	68266601,68273821,68274690	68266721,68273904,68275001	0.625000
tibial_nerve_female_adult_53_years	chr12	9065161	9065181	9065180	+	High_confidence	2	2	7	0.665600	2.521641	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.571429
tibial_nerve_female_adult_53_years	chr5	141931133	141931149	141931133	+	High_confidence	3	3	8	0.760686	2.807355	chr5	141930908	141931644	LINE|L2|L2a	-	chr5	141931218	141933882	DELE1|ENST00000506775.1	+	141931218,141933258	141931280,141933882	0.625000
tibial_nerve_female_adult_53_years	chr3	42872117	42872118	42872117	+	High_confidence	9	10	14	1.331200	3.026987	chr3	42872069	42872212	SINE|MIR|MIR1_Amn	-	chr3	42871724	42872643	STRG.24626.1	+	42871724	42872643	0.857143
tibial_nerve_female_adult_53_years	chr6	43502209	43502210	43502209	+	High_confidence	7	7	10	0.950857	2.503258	chr6	43502114	43502254	SINE|MIR|MIR3	-	chr6	43501525	43506553	TJAP1|ENST00000454762.1	+	43501525,43502282,43503400,43503622	43501687,43502349,43503508,43506553	0.800000
tibial_nerve_female_adult_53_years	chr11	123487414	123487461	123487460	+	High_confidence	14	15	52	4.944459	4.908877	chr11	123487237	123487531	LINE|L2|L2c	-	chr11	123487373	123609902	STRG.86544.4	+	123487373,123577366,123584311,123594081,123594734,123595941,123600467,123603425,123605321,123606608,123608658,123609794	123488060,123577577,123584332,123594166,123594838,123596037,123600548,123603541,123605478,123606798,123608802,123609902	0.961538
tibial_nerve_female_adult_53_years	chr8	29148576	29148586	29148585	-	RAMPAGE_only	3	4	8	0.760686	2.521641	chr8	29148400	29148564	SINE|Alu|FAM	-	chr8	29067278	29166010	STRG.64524.2	-	29067278,29071619,29092744,29099132,29108138,29109433,29109917,29113462,29116830,29118867,29122590,29123365,29124023,29126481,29127121,29130532,29132307,29134039,29140062,29140467,29142156,29146377,29147391,29148576,29150296,29155725,29160732,29165661	29070766,29072316,29092878,29099241,29108192,29109511,29110070,29113555,29117007,29118992,29122646,29123492,29124123,29126511,29127268,29130665,29132465,29134210,29140191,29140617,29142303,29146540,29147602,29148767,29150383,29155856,29160867,29166010	0.875000
tibial_nerve_female_adult_53_years	chr5	148440515	148440516	148440515	+	RAMPAGE_only	8	8	12	1.141029	3.095795	chr5	148440564	148440673	SINE|Alu|AluJo	+	chr5	148410033	148442776	STRG.45666.5	+	148410033,148415927,148416993,148423997,148425521,148427212,148433423,148433634,148438331,148439646,148440423,148441123,148441968	148414306,148416070,148417204,148424117,148425701,148427947,148433524,148433737,148438498,148439792,148440527,148441237,148442776	0.916667
tibial_nerve_female_adult_53_years	chr1	12572750	12572758	12572757	-	RAMPAGE_only	4	4	9	0.855772	2.500000	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.888889
tibial_nerve_female_adult_53_years	chr14	102235416	102235481	102235458	-	High_confidence	9	9	42	3.993601	4.375487	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.880952
tibial_nerve_female_adult_53_years	chr9	98110122	98110123	98110122	-	RAMPAGE_only	8	9	10	0.950857	2.947703	chr9	98110049	98110173	SINE|MIR|MIR3	-	chr9	98094866	98119136	TRIM14|ENST00000478401.1	-	98094866,98099930,98109888,98110068,98118981	98095029,98100164,98109984,98110234,98119136	0.700000
tibial_nerve_female_adult_53_years	chr6	169654690	169654702	169654690	-	RAMPAGE_only	3	3	8	0.760686	3.000000	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169457211	169649233	WDR27|ENST00000479310.5	-	169457211,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197	169457634,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649233	0.500000
tibial_nerve_female_adult_53_years	chr22	36158691	36158737	36158736	+	High_confidence	5	5	22	2.091886	3.884184	chr22	36158538	36158824	SINE|Alu|AluSc8	+	chr22	36158758	36158964	STRG.126247.1	+	36158758	36158964	0.545455
tibial_nerve_female_adult_53_years	chr6	5936180	5936266	5936180	-	High_confidence	4	4	37	3.518172	4.607706	chr6	5935731	5936187	LINE|L2|L2c	+	chr6	5935695	5936254	STRG.47350.1	-	5935695	5936254	0.972973
tibial_nerve_female_adult_53_years	chr9	128926945	128926974	128926973	+	High_confidence	3	3	8	0.760686	2.750000	chr9	128926857	128926990	LINE|L2|L2b	-	chr9	128927045	128940709	PHYHD1|ENST00000424503.1	+	128927045,128933726,128934010,128936447,128936582,128937756,128940368,128940598	128927196,128933857,128934058,128936503,128936645,128937778,128940497,128940709	1.000000
tibial_nerve_female_adult_53_years	chr17	75742693	75742749	75742747	+	High_confidence	9	16	49	4.659201	4.843803	chr17	75742779	75742995	SINE|MIR|MIRb	+	chr17	75742423	75749045	ITGB4|ENST00000584025.1	+	75742423,75743712,75746263,75748840	75742761,75743861,75746375,75749045	0.734694
tibial_nerve_female_adult_53_years	chr13	110179288	110179325	110179288	-	RAMPAGE_only	8	8	28	2.662401	3.810081	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	0.964286
tibial_nerve_female_adult_53_years	chr4	5640761	5640768	5640761	-	High_confidence	5	5	12	1.141029	3.251629	chr4	5640709	5640794	LINE|L2|L2	-	chr4	5562524	5640671	STRG.32289.2	-	5562524,5565257,5568443,5574684,5576239,5584622,5615421,5618477,5622536,5625748,5628558,5631792,5640521	5563115,5565359,5568640,5574772,5576454,5584850,5615544,5618682,5622991,5625908,5628734,5632032,5640671	0.750000
tibial_nerve_female_adult_53_years	chr19	47052113	47052154	47052113	+	High_confidence	4	4	19	1.806629	3.932138	chr19	47052007	47052153	LTR|ERV1|HERVH-int	-	chr19	47052022	47063897	STRG.119892.1	+	47052022,47052950,47062009	47052203,47053091,47063897	0.789474
tibial_nerve_female_adult_53_years	chr11	65434536	65434686	65434552	+	RAMPAGE_only	12	12	111	10.554517	5.094998	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
tibial_nerve_female_adult_53_years	chr19	51886854	51886864	51886863	-	High_confidence	3	3	7	0.665600	2.807355	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51880697	51886465	ZNF577|ENST00000639183.1	-	51880697,51886115	51880877,51886465	0.714286
tibial_nerve_female_adult_53_years	chr4	79086177	79086178	79086177	+	High_confidence	11	11	17	1.616458	3.202820	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308472	STRG.34946.3	+	79085238,79086095,79195835,79306690,79308272	79085347,79086262,79195932,79306728,79308472	0.823529
tibial_nerve_female_adult_53_years	chr19	20423697	20423704	20423697	-	RAMPAGE_only	6	8	14	1.331200	3.664498	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.571429
tibial_nerve_female_adult_53_years	chr6	35662588	35662603	35662588	-	RAMPAGE_only	17	17	45	4.278858	3.868271	chr6	35662276	35662582	SINE|Alu|AluJb	-	chr6	35573589	35666367	STRG.49028.5	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35661967	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35658655,35666367	0.933333
tibial_nerve_female_adult_53_years	chr16	8842153	8842215	8842153	+	High_confidence	9	9	31	2.947658	3.603412	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	1.000000
tibial_nerve_female_adult_53_years	chr1	35177443	35177476	35177443	-	High_confidence	3	3	9	0.855772	3.000000	chr1	35177421	35177635	SINE|Alu|AluJb	-	chr1	35176377	35177661	SFPQ|ENST00000471991.5	-	35176377,35177318	35176474,35177661	0.555556
tibial_nerve_female_adult_53_years	chr9	111284874	111284875	111284874	-	High_confidence	33	35	38	3.613258	3.747413	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111272826	111284849	STRG.73869.1	-	111272826,111284619	111272965,111284849	0.868421
tibial_nerve_female_adult_53_years	chr11	61949820	61949827	61949820	+	High_confidence	4	4	11	1.045943	2.921928	chr11	61949804	61949945	SINE|MIR|MIR3	-	chr11	61949820	61964461	BEST1|ENST00000378043.8	+	61949820,61951770,61955106,61955717,61956843,61957386,61958145,61959497,61959891,61962254,61964103	61950427,61951958,61955201,61955951,61956998,61957464,61958298,61959578,61960043,61962893,61964461	0.909091
tibial_nerve_female_adult_53_years	chr7	125564260	125564268	125564260	+	High_confidence	33	36	81	7.701945	5.471193	chr7	125563548	125564348	LTR|ERV1|LTR1A1	+	chr7	125564366	125565019	STRG.61868.1	+	125564366	125565019	0.839506
tibial_nerve_female_adult_53_years	chr3	142184805	142184848	142184810	-	RAMPAGE_only	5	6	32	3.042744	3.265851	chr3	142184570	142184847	SINE|Alu|AluSq2	+	chr3	142181461	142183488	GK5|ENST00000460630.1	-	142181461,142182922	142181565,142183488	0.968750
tibial_nerve_female_adult_53_years	chr9	127517314	127517332	127517314	-	RAMPAGE_only	5	5	12	1.141029	2.913977	chr9	127517274	127517652	LINE|L2|L2a	+	chr9	127505342	127568953	STRG.74707.1	-	127505342,127505725,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127505558,127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127568953	0.833333
tibial_nerve_female_adult_53_years	chr16	11774341	11774369	11774368	-	High_confidence	2	3	6	0.570514	2.584963	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	1.000000
tibial_nerve_female_adult_53_years	chr17	82081601	82081607	82081606	-	RAMPAGE_only	5	5	10	0.950857	2.646439	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	1.000000
tibial_nerve_female_adult_53_years	chr1	153967485	153967512	153967486	+	High_confidence	4	6	14	1.331200	3.093069	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.785714
tibial_nerve_female_adult_53_years	chr9	132935044	132935097	132935044	-	High_confidence	4	4	13	1.236115	3.238901	chr9	132935029	132935100	SINE|tRNA|LFSINE_Vert	+	chr9	132910260	132935090	TSC1|ENST00000647078.1	-	132910260,132911001,132911409,132912281,132921362,132921818,132923347,132925586,132927200,132928766,132935032	132910689,132911113,132911568,132912457,132921436,132921973,132923492,132925739,132927304,132928952,132935090	1.000000
tibial_nerve_female_adult_53_years	chr1	40041449	40041490	40041489	+	High_confidence	3	3	16	1.521372	3.056565	chr1	40041503	40041638	SINE|MIR|MIRc	+	chr1	40040779	40066295	CAP1|ENST00000424977.1	+	40040779,40041428,40059336,40060066,40061734,40064226,40064473,40066214	40040801,40041493,40059458,40060170,40061812,40064370,40064559,40066295	0.937500
tibial_nerve_female_adult_53_years	chr3	29924687	29924790	29924700	+	High_confidence	24	24	127	12.075889	4.947029	chr3	29924556	29924859	SINE|Alu|AluSp	+	chr3	29924750	29991197	RBMS3|ENST00000473799.1	+	29924750,29936085,29944206,29988142,29991081	29925243,29936196,29944254,29988223,29991197	1.000000
tibial_nerve_female_adult_53_years	chr8	99892029	99892057	99892056	-	RAMPAGE_only	24	24	90	8.557717	4.755719	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
tibial_nerve_female_adult_53_years	chr10	63610117	63610118	63610117	+	RAMPAGE_only	5	5	7	0.665600	2.584963	chr10	63609919	63610126	LINE|L1|L1ME2z	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	0.571429
tibial_nerve_female_adult_53_years	chr17	41871745	41871809	41871745	-	RAMPAGE_only	5	5	23	2.186972	3.638148	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.956522
tibial_nerve_female_adult_53_years	chr19	52616806	52616839	52616811	-	RAMPAGE_only	4	4	16	1.521372	2.702820	chr19	52616561	52616863	SINE|Alu|AluSp	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	1.000000
tibial_nerve_female_adult_53_years	chr9	1298287	1298288	1298287	+	RAMPAGE_only	8	8	11	1.045943	2.913977	chr9	1298301	1298444	SINE|MIR|MIRb	+	chr9	1321455	1328545	STRG.68891.1	+	1321455,1327073,1328424	1321495,1327173,1328545	0.545455
tibial_nerve_female_adult_53_years	chr5	42813613	42813647	42813613	+	High_confidence	23	23	91	8.652802	4.397628	chr5	42813649	42814032	LTR|ERV1|Harlequin-int	+	chr5	42813620	42922995	STRG.40403.1	+	42813620,42891306,42922737	42813919,42891443,42922995	0.527473
tibial_nerve_female_adult_53_years	chr13	40377921	40377940	40377921	-	High_confidence	3	3	12	1.141029	2.845351	chr13	40377863	40377935	SINE|MIR|MIRc	+	chr13	40343884	40377180	STRG.94940.1	-	40343884,40350108,40377050	40344205,40350336,40377180	0.500000
tibial_nerve_female_adult_53_years	chr19	49717736	49717766	49717746	+	High_confidence	4	4	14	1.331200	3.378783	chr19	49717515	49717903	LTR|ERVL|LTR50	+	chr19	49717752	49719130	STRG.120124.1	+	49717752	49719130	0.857143
tibial_nerve_female_adult_53_years	chr7	154928503	154928504	154928503	+	High_confidence	11	11	13	1.236115	3.546594	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	1.000000
tibial_nerve_female_adult_53_years	chr17	80288857	80288864	80288863	+	High_confidence	6	6	15	1.426286	3.378783	chr17	80288813	80288929	LINE|L2|L2c	-	chr17	80289443	80332669	STRG.114202.9	+	80289443,80290569,80291627,80294120,80295556,80298320,80306251,80307127,80309017,80313011,80317187,80319189,80325029,80327815,80328327,80332005	80289837,80290728,80291827,80295003,80295813,80298518,80306468,80307201,80309171,80313167,80317277,80319312,80325198,80327989,80328477,80332669	0.800000
tibial_nerve_female_adult_53_years	chr20	3795750	3795789	3795750	+	High_confidence	10	10	53	5.039544	4.822747	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
tibial_nerve_female_adult_53_years	chr14	68882879	68882887	68882879	-	High_confidence	16	16	25	2.377144	3.348799	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.920000
tibial_nerve_female_adult_53_years	chr12	9407491	9407507	9407491	-	High_confidence	8	8	26	2.472229	3.619471	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9397090	9407502	STRG.87844.1	-	9397090,9397614,9398381,9399794,9400235,9401746,9402426,9406307,9407307	9397214,9397689,9398484,9399863,9400326,9401859,9402553,9406398,9407502	0.961538
tibial_nerve_female_adult_53_years	chr10	19768169	19768211	19768195	+	RAMPAGE_only	13	13	58	5.514973	5.367634	chr10	19768143	19768495	LTR|ERV1|LTR23	+	chr10	19816238	20289856	PLXDC2|ENST00000377252.4	+	19816238,20001774,20046868,20068169,20143294,20147783,20164467,20176998,20177327,20211668,20217425,20219063,20245344,20279702	19817191,20001986,20047015,20068239,20143417,20147902,20164567,20177094,20177409,20211729,20217576,20219102,20245505,20289856	0.586207
tibial_nerve_female_adult_53_years	chr21	33756829	33756849	33756848	+	RAMPAGE_only	3	3	6	0.570514	2.584963	chr21	33756773	33757065	SINE|Alu|AluSq2	-	chr21	33754182	33772300	ITSN1|ENST00000488166.1	+	33754182,33755296,33756786,33761922,33765874,33767712,33772060	33754222,33755397,33757073,33761986,33766012,33767828,33772300	0.500000
tibial_nerve_female_adult_53_years	chr3	69999732	69999733	69999732	+	High_confidence	17	17	17	1.616458	3.337175	chr3	69999500	70000000	LTR|ERV1|LTR1A2	+	chr3	69999732	70014787	SAMMSON|ENST00000641286.1	+	69999732,70012356,70013519	69999867,70012598,70014787	1.000000
tibial_nerve_female_adult_53_years	chr5	143054417	143054421	143054417	+	High_confidence	3	3	8	0.760686	3.000000	chr5	143053748	143054428	LINE|L1|L1ME4c	-	chr5	143054438	143223194	ARHGAP26|ENST00000418236.5	+	143054438,143056027,143057641,143120987,143133966,143147230,143213996,143222357	143054526,143056086,143057747,143121147,143134105,143147381,143214088,143223194	0.625000
tibial_nerve_female_adult_53_years	chr20	36545621	36545662	36545631	+	RAMPAGE_only	8	8	24	2.282058	4.168296	chr20	36545648	36545942	SINE|Alu|AluY	+	chr20	36541496	36549825	STRG.122345.3	+	36541496,36544858,36549076	36541561,36548193,36549825	0.958333
tibial_nerve_female_adult_53_years	chr6	157702943	157702962	157702943	+	RAMPAGE_only	5	5	15	1.426286	2.923231	chr6	157702842	157702990	LTR|ERV1|HERVH-int	-	chr6	157700386	157875149	SNX9|ENST00000614703.4	+	157700386,157766384,157779823,157867546,157873101,157875050	157700471,157766536,157779867,157867633,157873176,157875149	0.533333
tibial_nerve_female_adult_53_years	chr11	117202782	117202837	117202782	+	High_confidence	3	3	20	1.901715	3.787144	chr11	117202579	117202783	DNA|hAT-Charlie|MER58A	+	chr11	117201872	117204778	TAGLN|ENST00000532870.5	+	117201872,117203306,117203781,117204214	117203193,117203484,117203884,117204778	0.950000
tibial_nerve_female_adult_53_years	chr6	112165386	112165406	112165386	-	RAMPAGE_only	3	3	6	0.570514	2.584963	chr6	112165361	112165475	SINE|MIR|MIRb	+	chr6	112142143	112191801	STRG.52167.5	-	112142143,112144793,112148156,112150510,112154850,112155564,112165159,112172610,112175312,112178120,112185236,112187449,112189109,112191635	112142292,112144933,112148336,112150627,112154947,112158880,112165276,112172804,112175480,112178232,112185347,112187601,112189205,112191801	0.500000
tibial_nerve_female_adult_53_years	chr2	36513647	36513760	36513759	+	High_confidence	14	14	66	6.275659	4.560224	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.969697
tibial_nerve_female_adult_53_years	chr11	123061191	123061322	123061256	-	High_confidence	43	47	170	16.164576	4.852627	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.970588
tibial_nerve_female_adult_53_years	chr21	33448834	33448876	33448834	-	High_confidence	14	14	28	2.662401	3.902175	chr21	33448743	33448924	SINE|Alu|AluJo	+	chr21	33432484	33448964	TMEM50B|ENST00000484377.5	-	33432484,33436882,33439213,33448781	33432802,33436992,33439297,33448964	0.928571
tibial_nerve_female_adult_53_years	chr12	122513877	122513878	122513877	-	High_confidence	4	5	7	0.665600	2.521641	chr12	122513839	122514036	SINE|Alu|AluJo	+	chr12	122505329	122513917	RSRC2|ENST00000392442.6	-	122505329,122506833,122508217,122511108,122513766	122505706,122506923,122508447,122511188,122513917	1.000000
tibial_nerve_female_adult_53_years	chr19	40772059	40772060	40772059	+	RAMPAGE_only	17	17	17	1.616458	3.101881	chr19	40771932	40772225	SINE|Alu|AluJo	-	chr19	40775176	40777493	MIA|NM_001202553.1	+	40775176,40775536,40775751,40776968,40777396	40775211,40775669,40775885,40777079,40777493	1.000000
tibial_nerve_female_adult_53_years	chr1	16950991	16951023	16951022	+	RAMPAGE_only	6	6	12	1.141029	2.845351	chr1	16950976	16951061	DNA|hAT-Ac|OldhAT1	+	chr1	16953156	16954781	CROCC|ENST00000497654.2	+	16953156,16954222,16954733	16953481,16954357,16954781	0.916667
tibial_nerve_female_adult_53_years	chr5	150125450	150125474	150125450	-	RAMPAGE_only	18	18	30	2.852572	4.281728	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.966667
tibial_nerve_female_adult_53_years	chr10	124605282	124605371	124605322	+	High_confidence	6	6	38	3.613258	4.463247	chr10	124605271	124605664	LINE|L2|L2b	-	chr10	124605199	124613425	LHPP|ENST00000486535.1	+	124605199,124613263	124605515,124613425	0.657895
tibial_nerve_female_adult_53_years	chr4	79245277	79245364	79245326	+	RAMPAGE_only	20	22	68	6.465830	4.939829	chr4	79244642	79246390	Retroposon|SVA|SVA_B	+	chr4	78971747	79252890	STRG.34946.4	+	78971747,78972999,79086095,79195835,79244943	78971876,78973052,79086262,79195932,79252890	0.970588
tibial_nerve_female_adult_53_years	chr1	19344373	19344389	19344388	-	RAMPAGE_only	12	12	31	2.947658	4.542748	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	1.000000
tibial_nerve_female_adult_53_years	chr7	64993383	64993403	64993402	-	RAMPAGE_only	4	6	16	1.521372	3.506891	chr7	64990915	64999343	LTR|ERV1|HERV3-int	-	chr7	64974451	65006653	STRG.58409.1	-	64974451,64981386,64981983,64989946,65006540	64979536,64981482,64982116,64993414,65006653	0.937500
tibial_nerve_female_adult_53_years	chr12	109179278	109179282	109179278	+	RAMPAGE_only	4	5	13	1.236115	3.334679	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109139396	109260147	ACACB|ENST00000377854.9	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260147	1.000000
tibial_nerve_female_adult_53_years	chr7	92457378	92457379	92457378	+	RAMPAGE_only	7	7	7	0.665600	2.521641	chr7	92457181	92457482	SINE|Alu|AluSx	+	chr7	92447447	92459432	GATAD1|ENST00000287957.4	+	92447447,92448751,92450700,92454501,92456371	92447978,92448877,92450760,92454685,92459432	1.000000
tibial_nerve_female_adult_53_years	chr6	33652491	33652524	33652523	+	High_confidence	10	10	29	2.757486	4.208966	chr6	33652459	33652763	SINE|Alu|AluSg	-	chr6	33652388	33696567	STRG.48765.3	+	33652388,33655765,33657931,33658669,33659020,33659465,33662527,33662910,33663499,33663737,33664869,33665052,33665834,33667128,33667791,33668514,33668973,33670324,33670670,33671164,33672028,33673590,33674207,33675690,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33683206,33684019,33684356,33684597,33684773,33685358,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33652608,33655887,33658018,33658828,33659119,33659549,33662674,33663006,33663550,33663880,33664969,33665213,33665976,33667290,33667964,33668634,33669156,33670576,33670815,33671306,33672228,33673720,33674265,33675856,33676932,33677089,33677629,33678543,33678802,33680133,33680454,33680680,33682644,33683397,33684168,33684465,33684688,33684943,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696567	0.931034
tibial_nerve_female_adult_53_years	chr1	166850124	166850144	166850124	+	RAMPAGE_only	6	9	20	1.901715	3.821928	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166847474	166856344	STRG.7780.4	+	166847474,166848937,166849787	166847592,166849733,166856344	1.000000
tibial_nerve_female_adult_53_years	chr8	25342488	25342502	25342497	+	RAMPAGE_only	2	5	9	0.855772	2.750000	chr8	25342534	25342606	SINE|Alu|AluSx3	+	chr8	25351392	25364777	DOCK5|ENST00000481728.2	+	25351392,25358962,25363046,25364625	25351826,25359061,25363141,25364777	0.555556
tibial_nerve_female_adult_53_years	chr2	86482561	86482578	86482577	+	RAMPAGE_only	12	12	20	1.901715	3.826875	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86441460	86492716	KDM3A|ENST00000409064.5	+	86441460,86442017,86449806,86451102,86455084,86456441,86456804,86456982,86464052,86466371,86470203,86474775,86477876,86478169,86478607,86480166,86481929,86482457,86483986,86484941,86485728,86489317,86489519,86490880,86491140,86492038	86441488,86442233,86449962,86451213,86455187,86456566,86456877,86457071,86464216,86466883,86470408,86474990,86478029,86478265,86478735,86480362,86482102,86482694,86484158,86485029,86485859,86489437,86489659,86491057,86491275,86492716	0.950000
tibial_nerve_female_adult_53_years	chr16	67539739	67539740	67539739	+	High_confidence	7	7	8	0.760686	2.521641	chr16	67539759	67539840	DNA|TcMar-Tigger|Tigger19b	+	chr16	67539864	67541758	RIPOR1|ENST00000569474.5	+	67539864,67540052,67540299,67540457,67541429,67541652	67539899,67540205,67540363,67540704,67541578,67541758	0.875000
tibial_nerve_female_adult_53_years	chr10	12076630	12076651	12076630	+	High_confidence	4	4	9	0.855772	2.503258	chr10	12076552	12076662	SINE|Alu|FLAM_A	+	chr10	12076539	12077014	STRG.75555.1	+	12076539	12077014	0.888889
tibial_nerve_female_adult_53_years	chr7	64990025	64990031	64990025	-	RAMPAGE_only	6	6	10	0.950857	2.641604	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.900000
tibial_nerve_female_adult_53_years	chr12	52056911	52056934	52056911	+	RAMPAGE_only	3	3	10	0.950857	2.521928	chr12	52056859	52057005	DNA|hAT-Tip100|MER91A	-	chr12	52053417	52059503	NR4A1|ENST00000550557.1	+	52053417,52057351,52058687	52057259,52057530,52059503	0.700000
tibial_nerve_female_adult_53_years	chr3	52615423	52615447	52615423	-	High_confidence	3	3	13	1.236115	2.918296	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.923077
tibial_nerve_female_adult_53_years	chr12	53173836	53173839	53173836	-	High_confidence	4	4	9	0.855772	2.725481	chr12	53173811	53174022	LINE|L1|L1MB7	-	chr12	53170070	53173790	CSAD|ENST00000424845.5	-	53170070,53170422,53171325,53171877,53173344,53173727	53170126,53170502,53171441,53171988,53173476,53173790	0.666667
tibial_nerve_female_adult_53_years	chr8	32927960	32927968	32927967	+	RAMPAGE_only	17	17	30	2.852572	4.664498	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.733333
tibial_nerve_female_adult_53_years	chr3	114624958	114625034	114625033	-	High_confidence	8	8	53	5.039544	5.298583	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.811321
tibial_nerve_female_adult_53_years	chr8	56559578	56559581	56559580	-	High_confidence	5	6	9	0.855772	2.750000	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56496245	56559586	LINC00968|ENST00000519144.5	-	56496245,56520120,56559557	56496333,56520567,56559586	0.555556
tibial_nerve_female_adult_53_years	chr15	52548499	52548517	52548516	-	RAMPAGE_only	3	5	9	0.855772	2.500000	chr15	52548513	52548656	DNA|TcMar-Tigger|Tigger7	+	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	0.777778
tibial_nerve_female_adult_53_years	chr5	146228877	146228878	146228877	+	RAMPAGE_only	6	6	8	0.760686	3.000000	chr5	146228592	146228912	SINE|Alu|AluJr	-	chr5	146218785	146252076	STRG.45418.2	+	146218785,146223402,146228945,146229716,146230656,146233449,146233647,146237297,146251710	146219103,146223527,146229037,146229910,146230917,146233611,146233743,146237432,146252076	1.000000
tibial_nerve_female_adult_53_years	chr8	2727222	2727264	2727222	+	High_confidence	7	8	24	2.282058	4.220176	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.958333
tibial_nerve_female_adult_53_years	chr2	128173731	128173738	128173737	+	RAMPAGE_only	7	7	17	1.616458	2.984234	chr2	128173483	128173742	LINE|L1|L1ME1	-	chr2	128091310	128195677	UGGT1|ENST00000259253.10	+	128091310,128097428,128103931,128107937,128109633,128113083,128115123,128116264,128120355,128121198,128123185,128127360,128129028,128133140,128134875,128138716,128143093,128145802,128152783,128155488,128156391,128157251,128159513,128160459,128161137,128164729,128170287,128171204,128172572,128173780,128174772,128176813,128177831,128178467,128179785,128180889,128182129,128183674,128186682,128187448,128189716	128091415,128097564,128104014,128108068,128109746,128113258,128115220,128116343,128120456,128121298,128123246,128127452,128129179,128133260,128134961,128138852,128143225,128145967,128152904,128155587,128156415,128157346,128159720,128160591,128161268,128164825,128170390,128171284,128172762,128173939,128174858,128176898,128177920,128178569,128179870,128181072,128182290,128183789,128186799,128187614,128195677	0.941176
tibial_nerve_female_adult_53_years	chr11	68756070	68756112	68756092	-	RAMPAGE_only	4	4	20	1.901715	3.146439	chr11	68755831	68756133	SINE|Alu|AluSq	+	chr11	68754888	68841916	CPT1A|ENST00000265641.9	-	68754888,68759568,68760224,68761534,68762626,68773264,68775315,68780639,68781770,68784814,68793314,68794803,68796855,68799217,68803999,68807466,68812436,68815333,68841774	68757730,68759661,68760338,68761687,68762761,68773429,68775432,68780745,68781959,68785010,68793402,68794911,68796933,68799355,68804101,68807638,68812576,68815487,68841916	0.950000
tibial_nerve_female_adult_53_years	chr10	89556703	89556704	89556703	-	High_confidence	8	10	12	1.141029	2.845351	chr10	89556405	89557345	LTR|ERVL|MER21A	+	chr10	89462502	89556641	SLC16A12|ENST00000475682.1	-	89462502,89555881,89556523	89462624,89555981,89556641	0.500000
tibial_nerve_female_adult_53_years	chr2	218287261	218287280	218287279	-	High_confidence	4	4	8	0.760686	2.521641	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.875000
tibial_nerve_female_adult_53_years	chr6	118651542	118651602	118651563	-	High_confidence	42	43	253	24.056692	6.315281	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.988142
tibial_nerve_female_adult_53_years	chr1	54277258	54277312	54277270	-	RAMPAGE_only	4	4	21	1.996801	3.932138	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54227060	54281637	STRG.3209.3	-	54227060,54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54277188	54227160,54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54251860,54281637	0.761905
tibial_nerve_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	2097	2158	5541	526.870089	7.453010	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.584191
tibial_nerve_female_adult_53_years	chr12	109458963	109459004	109458970	-	High_confidence	2	2	10	0.950857	2.947703	chr12	109458651	109459343	LINE|L1|HAL1	+	chr12	109449960	109458985	KCTD10|ENST00000540089.5	-	109449960,109456117,109457629,109457991	109451813,109456313,109457682,109458985	0.900000
tibial_nerve_female_adult_53_years	chr7	11192789	11192803	11192800	+	High_confidence	3	3	9	0.855772	2.750000	chr7	11192822	11192883	LINE|L1|L1MA1	+	chr7	11192759	11197417	AC004160.1|ENST00000611449.1	+	11192759,11197309	11193050,11197417	0.555556
tibial_nerve_female_adult_53_years	chr14	21020022	21020048	21020047	-	High_confidence	11	11	18	1.711543	3.683542	chr14	21020013	21020322	SINE|Alu|AluSg4	+	chr14	21017994	21020109	NDRG2|ENST00000557416.5	-	21017994,21018203,21018456,21018626,21018762,21019115,21019638,21019919	21018038,21018239,21018504,21018663,21018814,21019160,21019742,21020109	0.833333
tibial_nerve_female_adult_53_years	chr4	158172987	158173025	158173024	-	High_confidence	17	17	27	2.567315	4.238901	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.814815
tibial_nerve_female_adult_53_years	chr5	1579493	1579502	1579493	-	RAMPAGE_only	6	6	16	1.521372	3.577820	chr5	1578346	1579846	LTR|ERVK|HERVK9-int	-	chr5	1572136	1594620	STRG.39528.3	-	1572136,1574181,1576178,1579276,1579706,1584983,1589246,1593112,1594394	1572286,1574295,1576309,1579484,1581695,1585133,1589365,1593284,1594620	0.875000
tibial_nerve_female_adult_53_years	chr12	131000414	131000426	131000414	+	RAMPAGE_only	7	7	13	1.236115	3.085055	chr12	131000459	131000769	SINE|Alu|AluSx1	+	chr12	131002498	131141460	ADGRD1|ENST00000376682.8	+	131002498,131003184,131004185,131005971,131014198,131076800,131084539,131104830,131105753,131108723,131118384,131120846,131131724,131136036,131136972,131138136,131139167	131002837,131003302,131004296,131006047,131014340,131076874,131084663,131104934,131105865,131108877,131118451,131120913,131131816,131136163,131137014,131138229,131141460	1.000000
tibial_nerve_female_adult_53_years	chr14	100829521	100829554	100829521	+	High_confidence	2	2	9	0.855772	2.500000	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.888889
tibial_nerve_female_adult_53_years	chr9	125337360	125337392	125337360	+	RAMPAGE_only	3	3	12	1.141029	3.418296	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125302209	125363025	STRG.74584.5	+	125302209,125305062,125307412,125307690,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176,125342218,125346818,125349389,125350294,125350712,125354653,125355643,125359419,125360527,125362605	125302826,125305149,125307547,125307880,125312612,125321562,125323923,125326589,125330218,125332060,125332629,125337095,125337591,125341264,125342299,125346941,125349519,125350404,125350872,125354841,125355857,125359492,125360725,125363025	0.750000
tibial_nerve_female_adult_53_years	chr2	159428347	159428357	159428356	-	RAMPAGE_only	17	29	46	4.373944	5.078639	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.826087
tibial_nerve_female_adult_53_years	chr6	79631294	79631329	79631328	+	High_confidence	16	21	67	6.370745	5.356988	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.985075
tibial_nerve_female_adult_53_years	chr19	3062920	3062925	3062924	-	High_confidence	3	5	9	0.855772	2.947703	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	1.000000
tibial_nerve_female_adult_53_years	chr6	32120213	32120262	32120261	-	High_confidence	9	9	34	3.232915	4.300554	chr6	32120093	32120397	SINE|Alu|AluY	-	chr6	32118830	32120420	ATF6B|ENST00000492342.1	-	32118830,32118955,32119823	32118866,32119141,32120420	1.000000
tibial_nerve_female_adult_53_years	chr17	7313747	7313773	7313772	-	High_confidence	11	11	20	1.901715	3.511085	chr17	7313740	7313844	LINE|L2|L2c	+	chr17	7312658	7313757	GPS2|ENST00000573807.5	-	7312658,7313028,7313211	7312839,7313124,7313757	0.950000
tibial_nerve_female_adult_53_years	chr17	4143196	4143209	4143199	+	High_confidence	26	26	52	4.944459	4.461468	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.961538
tibial_nerve_female_adult_53_years	chr22	48693170	48693220	48693219	+	High_confidence	44	48	157	14.928461	5.793916	chr22	48693219	48693333	LINE|L1|L1ME4c	+	chr22	48693246	48750408	FAM19A5|ENST00000406880.1	+	48693246,48707716,48749838	48693381,48707844,48750408	0.917197
tibial_nerve_female_adult_53_years	chr5	32403108	32403149	32403108	-	RAMPAGE_only	8	8	16	1.521372	3.375000	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
tibial_nerve_female_adult_53_years	chr20	34369400	34369419	34369400	+	RAMPAGE_only	3	3	8	0.760686	2.521641	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.750000
tibial_nerve_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	130	152	300	28.525722	5.591681	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.973333
tibial_nerve_female_adult_53_years	chr2	217478558	217478559	217478558	-	RAMPAGE_only	5	5	8	0.760686	2.750000	chr2	217478481	217478582	SINE|MIR|MIRb	+	chr2	217425509	217434216	DIRC3|ENST00000484635.1	-	217425509,217426590,217427390,217432922,217433947	217425522,217426786,217427473,217433021,217434216	0.875000
tibial_nerve_female_adult_53_years	chr11	93499283	93499290	93499289	-	High_confidence	7	7	12	1.141029	2.845351	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	0.916667
tibial_nerve_female_adult_53_years	chr8	116648864	116648917	116648864	-	RAMPAGE_only	4	4	19	1.806629	3.530493	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.947368
tibial_nerve_female_adult_53_years	chr20	34132088	34132170	34132169	+	High_confidence	3	3	13	1.236115	3.026987	chr20	34131810	34133679	Retroposon|SVA|SVA_D	+	chr20	34132123	34132926	STRG.122171.1	+	34132123	34132926	0.615385
tibial_nerve_female_adult_53_years	chr6	43223193	43223201	43223200	+	High_confidence	5	5	12	1.141029	3.418296	chr6	43223152	43223215	LINE|L2|L2a	+	chr6	43223239	43224584	CUL9|ENST00000504647.1	+	43223239,43224094,43224249	43223397,43224168,43224584	0.916667
tibial_nerve_female_adult_53_years	chr12	643627	643633	643627	-	High_confidence	5	9	14	1.331200	2.777363	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.785714
tibial_nerve_female_adult_53_years	chr4	128570452	128570488	128570482	-	High_confidence	3	4	12	1.141029	3.095795	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.916667
tibial_nerve_female_adult_53_years	chr19	9140390	9140394	9140393	+	High_confidence	12	12	22	2.091886	3.921928	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.818182
tibial_nerve_female_adult_53_years	chr3	197613288	197613289	197613288	-	RAMPAGE_only	6	7	8	0.760686	2.750000	chr3	197613253	197613977	LTR|ERV1|LTR8A	-	chr3	197579212	197603968	STRG.31793.4	-	197579212,197593090,197603528	197579299,197593159,197603968	0.500000
tibial_nerve_female_adult_53_years	chr3	15049838	15049853	15049838	-	High_confidence	2	2	6	0.570514	2.584963	chr3	15049773	15049897	SINE|Alu|AluJb	-	chr3	15043405	15049967	STRG.23258.6	-	15043405,15049707	15047663,15049967	0.833333
tibial_nerve_female_adult_53_years	chr14	24308813	24308835	24308834	-	RAMPAGE_only	5	5	12	1.141029	3.084963	chr14	24308792	24309154	LTR|ERVL|LTR42	+	chr14	24305186	24311370	CIDEB|NM_014430.2	-	24305186,24305946,24306373,24307370,24307817,24308478,24310648	24305765,24306137,24306523,24307515,24307920,24308830,24311370	0.916667
tibial_nerve_female_adult_53_years	chrX	16712889	16712933	16712889	-	High_confidence	4	4	11	1.045943	3.095795	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16620278	16712903	STRG.127738.2	-	16620278,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712903	0.818182
tibial_nerve_female_adult_53_years	chr10	6223884	6223885	6223884	+	RAMPAGE_only	24	26	31	2.947658	4.453881	chr10	6223627	6223916	SINE|Alu|AluSp	-	chr10	6222707	6226447	PFKFB3|ENST00000487989.1	+	6222707,6223957,6224148,6226191	6222984,6224020,6224213,6226447	0.516129
tibial_nerve_female_adult_53_years	chr20	33624700	33624717	33624716	+	High_confidence	3	3	8	0.760686	2.750000	chr20	33624662	33624719	LINE|L2|L2b	+	chr20	33623746	33637722	STRG.122134.3	+	33623746,33628349,33629718,33636639,33637687	33625017,33628435,33629914,33636708,33637722	0.750000
tibial_nerve_female_adult_53_years	chr19	10379686	10379687	10379686	-	High_confidence	8	8	8	0.760686	2.500000	chr19	10379599	10379809	SINE|MIR|MIRb	+	chr19	10368328	10380510	TYK2|ENST00000530829.1	-	10368328,10369756,10378213,10379614,10380379	10368418,10369877,10378426,10379779,10380510	0.875000
tibial_nerve_female_adult_53_years	chr5	133089677	133089695	133089677	+	RAMPAGE_only	8	8	18	1.711543	3.239098	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.722222
tibial_nerve_female_adult_53_years	chr1	54277464	54277489	54277488	-	RAMPAGE_only	3	3	9	0.855772	2.750000	chr1	54277464	54277668	SINE|MIR|MIR1_Amn	+	chr1	54227060	54281637	STRG.3209.3	-	54227060,54228254,54228448,54228747,54239128,54240904,54241473,54242163,54243234,54251615,54251793,54277188	54227160,54228356,54228477,54228826,54239199,54240959,54241509,54242212,54243299,54251692,54251860,54281637	0.888889
tibial_nerve_female_adult_53_years	chr9	68975842	68975846	68975842	-	High_confidence	10	10	21	1.996801	3.584184	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68972269	68975832	STRG.71643.1	-	68972269,68975663	68972641,68975832	0.619048
tibial_nerve_female_adult_53_years	chr18	66670192	66670193	66670192	-	RAMPAGE_only	17	17	20	1.901715	3.747413	chr18	66669951	66670217	LINE|L2|L2	+	chr18	66501186	66604138	CDH19|NR_073130.1	-	66501186,66508994,66511567,66529844,66534985,66543970,66544718,66551093,66554404,66568415,66572009,66603953	66505302,66509218,66511685,66529966,66535107,66544224,66544903,66551258,66554524,66568710,66572316,66604138	0.500000
tibial_nerve_female_adult_53_years	chr17	69196825	69196848	69196825	-	RAMPAGE_only	13	13	31	2.947658	4.440224	chr17	69195559	69197005	Retroposon|SVA|SVA_B	-	chr17	69190896	69228655	STRG.113809.29	-	69190896,69192562,69193109,69193492,69193813,69194384,69196205,69201499,69214703,69215814,69216216,69219544,69221791,69222532,69225324,69227144,69228580	69191315,69192653,69193248,69193612,69193989,69194495,69197122,69201668,69214851,69216000,69216358,69219771,69221895,69222697,69225529,69227285,69228655	0.935484
tibial_nerve_female_adult_53_years	chr13	101583350	101583351	101583350	+	RAMPAGE_only	6	6	7	0.665600	2.584963	chr13	101583386	101583681	LINE|L1|L1MA1	+	chr13	101598144	101718344	ITGBL1|ENST00000490242.2	+	101598144,101692584,101706755,101714437,101715562,101717498	101598299,101692701,101706902,101714551,101715670,101718344	0.857143
tibial_nerve_female_adult_53_years	chr1	166850294	166850323	166850294	+	RAMPAGE_only	2	2	9	0.855772	2.641604	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166847474	166856344	STRG.7780.4	+	166847474,166848937,166849787	166847592,166849733,166856344	1.000000
tibial_nerve_female_adult_53_years	chr20	3869510	3869572	3869510	+	RAMPAGE_only	10	11	56	5.324801	4.518412	chr20	3869472	3869587	SINE|Alu|AluJr4	-	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.946429
tibial_nerve_female_adult_53_years	chr3	52518416	52518417	52518416	+	RAMPAGE_only	8	8	11	1.045943	3.121928	chr3	52518378	52518454	SINE|MIR|MIR3	+	chr3	52516177	52520246	STAB1|ENST00000461325.1	+	52516177,52516541,52516701,52517319,52517549,52517880,52518722,52519263,52519504,52520203	52516451,52516587,52517109,52517393,52517624,52518613,52518869,52519404,52520120,52520246	0.909091
tibial_nerve_female_adult_53_years	chr20	34369457	34369458	34369457	+	RAMPAGE_only	8	8	11	1.045943	3.027169	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.727273
tibial_nerve_female_adult_53_years	chr1	39556692	39556721	39556692	-	High_confidence	3	3	8	0.760686	3.000000	chr1	39556616	39556755	SINE|Alu|FLAM_C	+	chr1	39523844	39556719	PPIEL|ENST00000644158.1	-	39523844,39524835,39529054,39541719,39545732,39547578,39547708,39548682,39548861,39553117,39554348,39556598	39523896,39525057,39529164,39541841,39545857,39547608,39547749,39548746,39548951,39553144,39554392,39556719	0.875000
tibial_nerve_female_adult_53_years	chr19	52093972	52093991	52093990	-	High_confidence	4	4	11	1.045943	3.121928	chr19	52093852	52094032	SINE|Alu|AluJb	+	chr19	52076907	52093899	ZNF841|ENST00000599430.1	-	52076907,52084786,52088936,52093845	52077084,52084878,52089002,52093899	0.909091
tibial_nerve_female_adult_53_years	chr5	67646708	67646723	67646708	-	High_confidence	6	6	15	1.426286	3.640224	chr5	67646558	67646761	SINE|MIR|MIRc	-	chr5	67627129	67646798	STRG.41387.1	-	67627129,67634306,67636807,67646605	67633335,67634395,67636948,67646798	0.866667
tibial_nerve_female_adult_53_years	chr2	200889279	200889294	200889293	-	High_confidence	5	5	12	1.141029	2.918296	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.583333
tibial_nerve_female_adult_53_years	chr3	195688688	195688702	195688688	+	High_confidence	2	2	11	1.045943	3.277613	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688681	195708807	MUC20-OT1|ENST00000627562.2	+	195688681,195689338,195699029,195701379,195708133	195688797,195689438,195699207,195701495,195708807	0.727273
tibial_nerve_female_adult_53_years	chr1	238486008	238486036	238486008	-	High_confidence	7	7	42	3.993601	4.128494	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480383	238486017	LINC01139|NR_015407.1	-	238480383,238485784	238481681,238486017	0.785714
tibial_nerve_female_adult_53_years	chr9	104816478	104816518	104816497	-	RAMPAGE_only	2	3	8	0.760686	2.807355	chr9	104816479	104816577	LINE|L2|L2c	+	chr9	104781007	104847296	STRG.73326.3	-	104781007,104785395,104786297,104786872,104787919,104788425,104790921,104791935,104792785,104793170,104794386,104796052,104796308,104798420,104799818,104800509,104802053,104803283,104804625,104806240,104809465,104810799,104812573,104814117,104814426,104816142,104817331,104819585,104819926,104821374,104822495,104824464,104825682,104826947,104830924,104831621,104832573,104836979,104837427,104840278,104845476	104784455,104785639,104786390,104786976,104788054,104788567,104791028,104791998,104792906,104793300,104794510,104796197,104796424,104798598,104799988,104800584,104802159,104803316,104804720,104806430,104809564,104810924,104812722,104814231,104814475,104816345,104818883,104819723,104820069,104821506,104822667,104824578,104825887,104829138,104831101,104831827,104832771,104837096,104837567,104840519,104847296	0.875000
tibial_nerve_female_adult_53_years	chr15	80059915	80059926	80059918	+	High_confidence	6	7	20	1.901715	4.121928	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	1.000000
tibial_nerve_female_adult_53_years	chr22	39874066	39874070	39874066	-	RAMPAGE_only	57	60	86	8.177374	4.770425	chr22	39873891	39874245	LTR|ERVL-MaLR|THE1B	-	chr22	39743132	39862106	STRG.126550.1	-	39743132,39765222,39820992,39835839,39861764	39744283,39765609,39821113,39835958,39862106	0.860465
tibial_nerve_female_adult_53_years	chr4	78971860	78971869	78971860	+	High_confidence	2	3	7	0.665600	2.807355	chr4	78971775	78972175	LINE|L1|L1MA7	-	chr4	78971747	79308799	LINC01088|NR_038342.1	+	78971747,78972999,79086095,79195835,79306690,79308272	78971876,78973052,79086262,79195932,79306728,79308799	1.000000
tibial_nerve_female_adult_53_years	chr2	48568957	48568988	48568987	+	High_confidence	6	12	18	1.711543	3.725481	chr2	48569019	48569241	SINE|MIR|MIRb	+	chr2	48569019	48679609	STON1-GTF2A1L|NM_172311.2	+	48569019,48580586,48591652,48620850,48621166,48642401,48645032,48646452,48669721,48671590,48679334	48569086,48582563,48591855,48620952,48621290,48642457,48645117,48647042,48669982,48671680,48679609	0.944444
tibial_nerve_female_adult_53_years	chr6	127330835	127330854	127330853	-	High_confidence	4	4	14	1.331200	2.661226	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.928571
tibial_nerve_female_adult_53_years	chr15	75396547	75396548	75396547	-	RAMPAGE_only	6	6	8	0.760686	2.500000	chr15	75396541	75396779	SINE|MIR|MIR	+	chr15	75375739	75436417	STRG.105277.2	-	75375739,75380628,75381612,75384263,75389651,75392241,75394679,75396257,75400039,75400729,75401851,75407054,75409835,75410133,75411491,75412762,75414204,75422646,75430186,75436345	75375872,75380723,75381705,75384437,75389821,75392815,75394863,75396496,75400156,75400940,75401970,75407144,75409991,75410286,75411743,75413045,75414311,75422823,75430408,75436417	1.000000
tibial_nerve_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	38	38	38	3.613258	4.471354	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.789474
tibial_nerve_female_adult_53_years	chr1	193130173	193130234	193130233	+	RAMPAGE_only	5	5	18	1.711543	3.734522	chr1	193130278	193132058	LINE|L2|L2a	+	chr1	193122534	193141955	CDC73|ENST00000649706.1	+	193122534,193125111,193130173,193135390,193135536,193138084,193141849	193122606,193125217,193130243,193135453,193135589,193138173,193141955	0.888889
tibial_nerve_female_adult_53_years	chr5	115956591	115956676	115956675	+	High_confidence	31	33	166	15.784233	6.449223	chr5	115956262	115957250	LINE|L2|L2b	-	chr5	115956613	115958587	STRG.43640.1	+	115956613,115958428	115956920,115958587	0.668675
tibial_nerve_female_adult_53_years	chr5	67646802	67646811	67646810	-	High_confidence	11	17	24	2.282058	3.486441	chr5	67646558	67646761	SINE|MIR|MIRc	-	chr5	67627129	67646798	STRG.41387.1	-	67627129,67634306,67636807,67646605	67633335,67634395,67636948,67646798	0.791667
tibial_nerve_female_adult_53_years	chr11	90251203	90251205	90251204	+	High_confidence	6	9	10	0.950857	3.169925	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.700000
tibial_nerve_female_adult_53_years	chr22	23705467	23705468	23705467	-	RAMPAGE_only	8	11	11	1.045943	2.845351	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	1.000000
tibial_nerve_female_adult_53_years	chr6	127330917	127330929	127330928	-	High_confidence	7	7	14	1.331200	3.378783	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	1.000000
tibial_nerve_female_adult_53_years	chr11	64226142	64226180	64226158	-	High_confidence	29	30	166	15.784233	6.359706	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.981928
tibial_nerve_female_adult_53_years	chr19	45823800	45823858	45823822	-	High_confidence	15	15	38	3.613258	4.701746	chr19	45823777	45823871	LINE|RTE-BovB|MamRTE1	-	chr19	45816482	45824012	SYMPK|ENST00000598329.2	-	45816482,45816797,45817958,45821383,45822755,45823371,45823766	45816577,45816974,45818146,45821485,45822846,45823472,45824012	0.605263
tibial_nerve_female_adult_53_years	chr12	7115158	7115173	7115172	+	RAMPAGE_only	17	17	34	3.232915	4.718488	chr12	7114990	7115194	LINE|L2|L2b	+	chr12	7108307	7121851	C1RL-AS1|NR_026947.1	+	7108307,7108672,7110063,7110297,7111024,7112006,7115129,7115385,7118898,7119499,7120505,7121711	7108481,7108947,7110147,7110572,7111606,7112064,7115219,7118677,7119026,7119553,7120625,7121851	0.676471
tibial_nerve_female_adult_53_years	chr16	65053812	65053840	65053812	-	RAMPAGE_only	2	4	10	0.950857	3.169925	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	65004708	65059678	CDH11|ENST00000562712.5	-	65004708,65053803,65059523	65005041,65053928,65059678	0.600000
tibial_nerve_female_adult_53_years	chr22	49925451	49925454	49925451	+	RAMPAGE_only	6	6	10	0.950857	2.846439	chr22	49925493	49925572	LINE|CR1|L3b	+	chr22	49923209	49927528	CRELD2|ENST00000487969.1	+	49923209,49927254	49925557,49927528	1.000000
tibial_nerve_female_adult_53_years	chr14	24435997	24435998	24435997	+	High_confidence	8	8	12	1.141029	3.277613	chr14	24435906	24436044	LINE|L1|L1PB4	-	chr14	24435456	24438408	KHNYN|ENST00000556255.1	+	24435456,24436387,24437035	24436179,24436489,24438408	0.750000
tibial_nerve_female_adult_53_years	chr1	204116615	204116632	204116631	+	High_confidence	5	5	13	1.236115	2.855389	chr1	204116612	204116693	LINE|RTE-BovB|MamRTE1	+	chr1	204116506	204122917	SOX13|ENST00000480326.1	+	204116506,204117121,204117592,204121870,204122236,204122853	204116679,204117190,204117707,204121985,204122399,204122917	0.615385
tibial_nerve_female_adult_53_years	chr1	51366133	51366166	51366151	-	RAMPAGE_only	5	5	17	1.616458	2.984234	chr1	51366072	51366367	SINE|Alu|AluJb	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.882353
tibial_nerve_female_adult_53_years	chr1	227758589	227758625	227758624	+	High_confidence	6	7	16	1.521372	3.625000	chr1	227758567	227758649	DNA|hAT-Charlie|MER3	-	chr1	227758546	227767352	STRG.10209.6	+	227758546,227758994,227766958	227758659,227759485,227767352	1.000000
tibial_nerve_female_adult_53_years	chr17	69067533	69067590	69067536	-	RAMPAGE_only	3	3	13	1.236115	3.180833	chr17	69067285	69067579	SINE|Alu|AluJb	+	chr17	69067274	69115442	STRG.113809.14	-	69067274,69069256,69078959,69079209,69081065,69082872,69083211,69084260,69084431,69085027,69085624,69086617,69087352,69088166,69089464,69091142,69096239,69096627,69097919,69100796,69102834,69105461,69106027,69107695,69110800,69112182,69113221,69113617,69114761,69115375	69067556,69077836,69079074,69079265,69081145,69083013,69083331,69084355,69084507,69085182,69085716,69086735,69087473,69088258,69089542,69091262,69096353,69096801,69098027,69100934,69102968,69105628,69106211,69107812,69110940,69112273,69113360,69113737,69114937,69115442	0.769231
tibial_nerve_female_adult_53_years	chr3	143043267	143043274	143043273	+	RAMPAGE_only	6	7	11	1.045943	3.095795	chr3	143043314	143043694	LINE|L2|L2b	+	chr3	143036082	143056846	U2SURP|ENST00000467348.1	+	143036082,143037178,143038107,143038893,143043116,143050938,143053675,143056311	143036104,143037335,143038203,143038960,143043276,143051049,143053794,143056846	0.909091
tibial_nerve_female_adult_53_years	chr11	65434793	65434802	65434793	+	RAMPAGE_only	2	2	7	0.665600	2.521641	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
tibial_nerve_female_adult_53_years	chr10	30999441	30999520	30999519	-	High_confidence	10	10	36	3.423087	4.734522	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30998836	30999734	STRG.76359.4	-	30998836	30999734	0.777778
tibial_nerve_female_adult_53_years	chr6	149632768	149632769	149632768	-	RAMPAGE_only	6	6	7	0.665600	2.584963	chr6	149632576	149632725	LINE|L1|L1ME4b	-	chr6	149594872	149638592	KATNA1|ENST00000335647.9	-	149594872,149597062,149597506,149598223,149601593,149603267,149604660,149623102,149632758,149638385	149595234,149597189,149597641,149598350,149601752,149603373,149604782,149623283,149632916,149638592	0.857143
tibial_nerve_female_adult_53_years	chr5	170267193	170267294	170267293	-	High_confidence	5	5	26	2.472229	4.163856	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.730769
tibial_nerve_female_adult_53_years	chr1	33021454	33021455	33021454	-	RAMPAGE_only	23	26	31	2.947658	4.389898	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.967742
tibial_nerve_female_adult_53_years	chr7	64990064	64990080	64990079	-	High_confidence	3	4	7	0.665600	2.584963	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.714286
tibial_nerve_female_adult_53_years	chr8	96513766	96513773	96513770	+	RAMPAGE_only	6	6	17	1.616458	3.219528	chr8	96513732	96513971	LINE|CR1|L3	+	chr8	96494007	96609643	SDC2|ENST00000522911.5	+	96494007,96593479,96602394,96608334,96609384	96494043,96593591,96602528,96608470,96609643	0.588235
tibial_nerve_female_adult_53_years	chr13	81020603	81020625	81020621	+	RAMPAGE_only	11	11	26	2.472229	4.363713	chr13	81020592	81021344	LINE|L1|L1PA15-16	+	chr13	81018390	81044442	LINC00377|NR_125770.1	+	81018390,81020605,81043670,81043966	81018460,81020806,81043850,81044442	0.961538
tibial_nerve_female_adult_53_years	chr5	151687139	151687245	151687244	-	High_confidence	13	15	96	9.128231	5.970176	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.864583
tibial_nerve_female_adult_53_years	chr4	102431237	102431248	102431247	-	High_confidence	3	3	7	0.665600	2.807355	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	1.000000
tibial_nerve_female_adult_53_years	chr3	33838232	33838257	33838256	+	RAMPAGE_only	8	8	19	1.806629	3.616349	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.736842
tibial_nerve_female_adult_53_years	chr1	26284445	26284559	26284538	-	RAMPAGE_only	19	19	46	4.373944	4.774861	chr1	26284514	26284630	SINE|MIR|MIR3	-	chr1	26282304	26298026	UBXN11|ENST00000496466.1	-	26282304,26282648,26282863,26284141,26284361,26285822,26294204,26296918,26297426,26297961	26282569,26282789,26282937,26284281,26285541,26286037,26294331,26296995,26297481,26298026	0.978261
tibial_nerve_female_adult_53_years	chr3	9818575	9818606	9818575	+	High_confidence	3	4	10	0.950857	2.947703	chr3	9818371	9818667	SINE|Alu|AluY	-	chr3	9818560	9835404	TTLL3|ENST00000473661.5	+	9818560,9825799,9826996,9827214,9828959,9833103,9834426,9834680	9820741,9825948,9827072,9827240,9829395,9833245,9834503,9835404	0.900000
tibial_nerve_female_adult_53_years	chr3	180870518	180870522	180870518	-	High_confidence	3	4	12	1.141029	3.095795	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180782028	180870526	STRG.31084.1	-	180782028,180847506,180870046	180782124,180847624,180870526	0.833333
tibial_nerve_female_adult_53_years	chr2	240022215	240022322	240022215	-	RAMPAGE_only	11	11	52	4.944459	4.461668	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.980769
tibial_nerve_female_adult_53_years	chr8	19955896	19955909	19955904	+	RAMPAGE_only	5	5	12	1.141029	2.845351	chr8	19955939	19955979	DNA|TcMar-Tigger|Tigger19b	+	chr8	19939252	19967259	LPL|ENST00000650287.1	+	19939252,19948179,19951768,19953309,19954119,19955840,19959259,19960900,19962114,19965309	19939528,19948340,19951948,19953421,19954353,19956083,19959380,19961083,19962219,19967259	0.916667
tibial_nerve_female_adult_53_years	chr21	34512179	34512219	34512209	-	High_confidence	4	5	21	1.996801	3.921928	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.666667
tibial_nerve_female_adult_53_years	chr16	30729544	30729566	30729565	+	RAMPAGE_only	8	8	15	1.426286	2.706891	chr16	30729600	30729733	LINE|CR1|L3	+	chr16	30711510	30739733	STRG.108111.5	+	30711510,30711834,30712261,30712678,30713207,30713518,30716065,30716292,30720161,30720712,30722121,30722962,30723583,30728965,30729369,30733279,30733601,30733893,30734495,30736199,30736540,30737048	30711744,30712157,30712439,30712815,30713377,30713711,30716202,30716479,30720331,30721476,30722286,30723229,30725082,30729231,30729572,30733449,30733798,30734008,30734615,30736394,30736624,30739733	1.000000
tibial_nerve_female_adult_53_years	chr12	62305945	62305989	62305988	+	High_confidence	3	3	7	0.665600	2.521641	chr12	62305734	62306281	LTR|ERVL-MaLR|MLT1F	+	chr12	62305594	62325933	USP15|ENST00000546694.1	+	62305594,62314789,62321463,62325871	62306058,62314916,62321609,62325933	0.571429
tibial_nerve_female_adult_53_years	chr11	77175226	77175303	77175302	+	High_confidence	35	35	179	17.020348	5.978100	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.972067
tibial_nerve_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	70	70	77	7.321602	4.309556	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.974026
tibial_nerve_female_adult_53_years	chr12	120465641	120465645	120465641	-	High_confidence	3	3	9	0.855772	2.500000	chr12	120465539	120465607	SINE|MIR|MIRb	-	chr12	120461710	120464943	SRSF9|ENST00000548792.1	-	120461710,120463949	120462162,120464943	0.888889
tibial_nerve_female_adult_53_years	chr13	48492746	48492784	48492746	-	High_confidence	2	2	10	0.950857	2.725481	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489059	48492764	STRG.95393.4	-	48489059,48492439	48490251,48492764	0.900000
tibial_nerve_female_adult_53_years	chr8	19955978	19955990	19955978	+	High_confidence	3	3	8	0.760686	2.750000	chr8	19955939	19955979	DNA|TcMar-Tigger|Tigger19b	+	chr8	19956004	19967196	LPL|ENST00000650478.1	+	19956004,19960900,19962114,19965309	19956083,19961083,19962219,19967196	0.625000
tibial_nerve_female_adult_53_years	chr7	76502100	76502101	76502100	+	High_confidence	4	4	6	0.570514	2.584963	chr7	76501888	76502176	SINE|Alu|AluSx1	-	chr7	76501888	76505991	DTX2|ENST00000468546.5	+	76501888,76503425,76504355,76505373	76502456,76503587,76504445,76505991	0.833333
tibial_nerve_female_adult_53_years	chr15	96119977	96119996	96119977	-	High_confidence	3	3	8	0.760686	2.521641	chr15	96119893	96120178	SINE|Alu|AluSx	-	chr15	96119640	96120170	STRG.106264.1	-	96119640	96120170	0.750000
tibial_nerve_female_adult_53_years	chr7	95869948	95869969	95869948	+	RAMPAGE_only	5	5	11	1.045943	2.845351	chr7	95869931	95869979	LINE|L2|L2	-	chr7	95837617	96028321	DYNC1I1|ENST00000519371.1	+	95837617,95869882,95977511,95984814,95987055,95995947,96028174	95837649,95869998,95977601,95984977,95987155,95996073,96028321	1.000000
tibial_nerve_female_adult_53_years	chr5	142875135	142875157	142875156	+	High_confidence	8	8	31	2.947658	4.542748	chr5	142875200	142875313	SINE|MIR|MIR3	+	chr5	142874892	142919443	ARHGAP26|ENST00000475287.2	+	142874892,142879373,142885297,142894237,142901934,142903539,142907703,142913198,142919210	142875171,142879445,142885399,142894348,142902039,142903669,142907804,142913293,142919443	1.000000
tibial_nerve_female_adult_53_years	chr12	50033423	50033482	50033423	-	High_confidence	3	3	11	1.045943	3.277613	chr12	50033334	50033456	LINE|L2|L2c	-	chr12	50005255	50033136	RACGAP1|ENST00000548247.1	-	50005255,50016630,50031696,50032969	50005392,50016719,50031867,50033136	0.727273
tibial_nerve_female_adult_53_years	chr11	64242479	64242547	64242537	+	High_confidence	3	4	19	1.806629	3.794653	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.947368
tibial_nerve_female_adult_53_years	chr9	39810033	39810064	39810033	-	High_confidence	2	2	8	0.760686	2.807355	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.500000
tibial_nerve_female_adult_53_years	chr1	97904649	97904676	97904675	-	RAMPAGE_only	6	6	15	1.426286	3.506891	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.666667
tibial_nerve_female_adult_53_years	chr17	59620043	59620116	59620043	+	High_confidence	3	4	24	2.282058	4.053509	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.875000
tibial_nerve_female_adult_53_years	chr2	29175401	29175446	29175403	+	High_confidence	17	28	61	5.800230	4.861569	chr2	29175307	29175605	LINE|CR1|L3	+	chr2	29175362	29181758	CLIP4|ENST00000481628.1	+	29175362,29181571	29175600,29181758	0.934426
tibial_nerve_female_adult_53_years	chr1	46804322	46804370	46804369	+	RAMPAGE_only	30	30	117	11.125032	5.197026	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.538462
tibial_nerve_female_adult_53_years	chr10	95493243	95493264	95493243	-	RAMPAGE_only	4	4	8	0.760686	2.750000	chr10	95493013	95493319	SINE|Alu|AluSg	+	chr10	95311772	95441180	SORBS1|NM_001034954.1	-	95311772,95318319,95321962,95336520,95339132,95341284,95341563,95346405,95351208,95354881,95357630,95367649,95371325,95371983,95375972,95381684,95383984,95384237,95394610,95395000,95397219,95399016,95406117,95410632,95414493,95421960,95422189,95432447,95434621,95437489,95441125	95315126,95318432,95322021,95337294,95339327,95341410,95341678,95346452,95351376,95354967,95357803,95367699,95371427,95372049,95376056,95381799,95384114,95384285,95394673,95395075,95397283,95399189,95406147,95410777,95414862,95422073,95422216,95432576,95434717,95437555,95441180	0.500000
tibial_nerve_female_adult_53_years	chr16	89549600	89549638	89549618	+	RAMPAGE_only	3	4	10	0.950857	2.921928	chr16	89549377	89549680	SINE|Alu|AluJr	+	chr16	89548158	89557762	SPG7|ENST00000561702.6	+	89548158,89552978,89553793,89554485,89556886	89550609,89553135,89553960,89554563,89557762	1.000000
tibial_nerve_female_adult_53_years	chr1	21260417	21260437	21260436	-	RAMPAGE_only	5	5	9	0.855772	2.750000	chr1	21260391	21260603	SINE|MIR|MIRb	+	chr1	21218583	21279549	ECE1|ENST00000357071.8	-	21218583,21221746,21225249,21227158,21227930,21233557,21235849,21236745,21238133,21244988,21247220,21255946,21257524,21258692,21260270,21272698,21279190	21220131,21221842,21225440,21227226,21228041,21233661,21235927,21236844,21238244,21245103,21247363,21256138,21257590,21258839,21260392,21272911,21279549	0.888889
tibial_nerve_female_adult_53_years	chr12	93773411	93773412	93773411	+	RAMPAGE_only	13	13	16	1.521372	3.373557	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	0.500000
tibial_nerve_female_adult_53_years	chr1	52916426	52916513	52916476	-	High_confidence	30	30	93	8.842974	5.258757	chr1	52916375	52916563	SINE|MIR|MIRb	+	chr1	52915030	52917273	STRG.3036.17	-	52915030	52917273	0.989247
tibial_nerve_female_adult_53_years	chrX	123911194	123911197	123911194	+	RAMPAGE_only	4	4	8	0.760686	2.500000	chrX	123911196	123911490	SINE|Alu|AluSp	+	chrX	123860271	123913965	XIAP|ENST00000355640.3	+	123860271,123885630,123888618,123891237,123892730,123900492,123906987	123860545,123886539,123888718,123891316,123892773,123900693,123913965	0.875000
tibial_nerve_female_adult_53_years	chr7	121062866	121062867	121062866	+	High_confidence	17	18	22	2.091886	4.106603	chr7	121062672	121063032	LTR|ERVL-MaLR|THE1B	+	chr7	121062879	121125893	STRG.61822.3	+	121062879,121064237,121097698,121099925,121124330,121125819	121062896,121064313,121097831,121100094,121124473,121125893	0.909091
tibial_nerve_female_adult_53_years	chr19	51350329	51350373	51350356	-	RAMPAGE_only	3	4	12	1.141029	3.188722	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345687	51348530	ETFB|ENST00000594361.1	-	51345687	51348530	0.500000
tibial_nerve_female_adult_53_years	chrX	113991926	113991941	113991926	-	RAMPAGE_only	5	5	15	1.426286	2.978095	chrX	113991687	113992070	LTR|ERVL|MLT2A1	-	chrX	113961710	114059289	XACT|ENST00000649506.1	-	113961710,114042367,114059003	113963599,114042484,114059289	0.666667
tibial_nerve_female_adult_53_years	chr1	21841544	21841642	21841544	-	RAMPAGE_only	7	8	33	3.137829	3.094737	chr1	21841366	21841498	SINE|MIR|MIRb	-	chr1	21822231	21937297	HSPG2|NM_005529.6	-	21822231,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174,21937154	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896310,21937297	1.000000
tibial_nerve_female_adult_53_years	chrX	73837439	73837451	73837439	-	RAMPAGE_only	19	19	37	3.518172	3.949205	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
tibial_nerve_female_adult_53_years	chr1	52911895	52911921	52911905	-	High_confidence	3	3	10	0.950857	2.725481	chr1	52911855	52912001	SINE|MIR|MIRc	+	chr1	52907838	52911888	ECHDC2|ENST00000492992.1	-	52907838,52911565,52911722	52907954,52911653,52911888	0.500000
tibial_nerve_female_adult_53_years	chr7	100349866	100349885	100349884	+	RAMPAGE_only	6	6	11	1.045943	3.095795	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336124	100351900	STRG.60368.11	+	100336124,100338178,100338772,100345864,100349716,100351251	100336337,100338264,100338889,100345968,100349887,100351900	0.636364
tibial_nerve_female_adult_53_years	chr7	102822458	102822461	102822458	-	RAMPAGE_only	7	8	14	1.331200	3.085055	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.857143
tibial_nerve_female_adult_53_years	chr17	56904425	56904426	56904425	-	High_confidence	6	6	9	0.855772	2.947703	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.888889
tibial_nerve_female_adult_53_years	chr6	77369106	77369167	77369166	-	High_confidence	11	13	44	4.183773	4.680689	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77350655	77369150	STRG.50476.1	-	77350655,77368885	77350734,77369150	0.522727
tibial_nerve_female_adult_53_years	chr11	117373825	117373826	117373825	+	RAMPAGE_only	8	8	8	0.760686	2.750000	chr11	117373844	117374062	SINE|MIR|MIRb	+	chr11	117370629	117412830	STRG.86277.3	+	117370629,117373750,117375707,117380613,117381700,117387202,117390776,117390998,117392225,117392495,117393003,117394349,117394919,117395122,117395546,117396056,117396549,117397090,117407924,117408889,117409617,117410827,117411794,117412071	117371466,117373831,117375791,117380705,117381868,117387412,117390908,117391215,117392303,117392627,117393126,117394493,117395003,117395191,117395722,117396180,117396611,117397313,117408032,117409028,117409965,117410894,117411917,117412830	1.000000
tibial_nerve_female_adult_53_years	chr22	23705502	23705514	23705513	-	RAMPAGE_only	15	15	34	3.232915	4.337175	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.941176
tibial_nerve_female_adult_53_years	chr2	159382560	159382569	159382560	-	RAMPAGE_only	3	3	10	0.950857	3.169925	chr2	159382314	159382523	SINE|MIR|MIRb	-	chr2	159318978	159616569	BAZ2B|ENST00000392782.5	-	159318978,159324810,159325652,159332539,159336941,159337566,159347485,159348677,159349006,159349707,159373044,159374690,159382558,159383605,159385154,159386352,159389344,159395768,159397344,159398828,159400598,159404848,159405021,159412334,159428310,159429199,159430862,159432756,159438302,159439008,159446781,159448241,159453612,159478574,159555822,159616241	159320418,159324954,159325918,159332686,159337077,159337772,159347646,159348833,159349280,159350357,159373189,159374753,159382802,159383680,159385369,159386607,159389485,159395834,159397389,159398894,159400664,159404910,159405114,159412545,159428419,159429260,159431156,159433363,159438695,159439212,159446975,159448403,159453801,159478721,159555865,159616569	0.900000
tibial_nerve_female_adult_53_years	chr19	48868595	48868617	48868595	-	High_confidence	1804	1875	5391	512.607228	7.382501	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.995734
tibial_nerve_female_adult_53_years	chr14	50756779	50756808	50756779	-	RAMPAGE_only	4	4	15	1.426286	3.039149	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.933333
tibial_nerve_female_adult_53_years	chr21	43067975	43067986	43067975	-	High_confidence	11	11	36	3.423087	4.243010	chr21	43067853	43068123	LTR|ERV1|MER92B	+	chr21	43053190	43068404	CBS|ENST00000461686.5	-	43053190,43056802,43058144,43058833,43059225,43060440,43062310,43062952,43063899,43065202,43065386,43065615,43066242,43067777	43053983,43056887,43058253,43058968,43059303,43060546,43062395,43063078,43063991,43065272,43065521,43065695,43066377,43068404	0.916667
tibial_nerve_female_adult_53_years	chr13	52429437	52429464	52429437	-	High_confidence	7	7	19	1.806629	3.826875	chr13	52429311	52429618	LINE|L2|L2b	+	chr13	52425769	52429367	VPS36|ENST00000492650.1	-	52425769,52426988,52427186,52429235	52426066,52427066,52427219,52429367	0.736842
tibial_nerve_female_adult_53_years	chr9	129489096	129489126	129489125	+	High_confidence	4	4	16	1.521372	3.773557	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.625000
tibial_nerve_female_adult_53_years	chr15	77285030	77285037	77285036	-	RAMPAGE_only	5	5	12	1.141029	3.584963	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.666667
tibial_nerve_female_adult_53_years	chr9	129698737	129698760	129698759	+	RAMPAGE_only	4	4	8	0.760686	2.500000	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	1.000000
tibial_nerve_female_adult_53_years	chr3	195577224	195577248	195577247	-	RAMPAGE_only	19	19	48	4.564116	4.023699	chr3	195577216	195577702	LINE|L1|L1MB8	+	chr3	195568752	195583954	APOD|ENST00000458447.5	-	195568752,195571276,195573849,195577061,195579338,195583877	195569135,195571365,195573971,195577183,195579495,195583954	0.625000
tibial_nerve_female_adult_53_years	chr7	130984057	130984058	130984057	-	RAMPAGE_only	9	9	13	1.236115	3.238901	chr7	130983943	130984021	SINE|MIR|MIR	-	chr7	130944168	131081013	LINC-PINT|ENST00000646587.1	-	130944168,130984052,131052424,131080865	130945835,130984109,131052555,131081013	1.000000
tibial_nerve_female_adult_53_years	chr4	152412488	152412529	152412488	-	High_confidence	6	6	19	1.806629	4.037401	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
tibial_nerve_female_adult_53_years	chr9	111011652	111011656	111011652	-	RAMPAGE_only	5	5	9	0.855772	2.503258	chr9	111011255	111011741	LINE|CR1|L3	-	chr9	111010060	111039268	STRG.73880.12	-	111010060,111038869	111011690,111039268	0.777778
tibial_nerve_female_adult_53_years	chr18	46087060	46087092	46087091	-	High_confidence	2	2	6	0.570514	2.584963	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.833333
tibial_nerve_female_adult_53_years	chr3	44439864	44439885	44439884	-	High_confidence	3	3	7	0.665600	2.521641	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421126	44439917	C3orf86|ENST00000636468.1	-	44421126,44439796	44421813,44439917	0.714286
tibial_nerve_female_adult_53_years	chr7	11192985	11193005	11192985	+	High_confidence	3	3	8	0.760686	2.521641	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.750000
tibial_nerve_female_adult_53_years	chr12	12110981	12110982	12110981	+	High_confidence	17	20	25	2.377144	3.943465	chr12	12110866	12110982	SINE|Alu|AluJb	+	chr12	12111162	12111489	AC007537.1|ENST00000539347.1	+	12111162	12111489	0.560000
tibial_nerve_female_adult_53_years	chr12	112039669	112039731	112039669	-	RAMPAGE_only	7	7	23	2.186972	4.229871	chr12	112039466	112039729	LINE|L2|L2c	+	chr12	112027787	112108785	NAA25|ENST00000552527.5	-	112027787,112033232,112039228,112042038,112043087,112043624,112047664,112048291,112053557,112054387,112060269,112061180,112068879,112071894,112074674,112075677,112078187,112078633,112081059,112087682,112090725,112093050,112108715	112029653,112033379,112040578,112042104,112043211,112043868,112047790,112048443,112053657,112054568,112060359,112061388,112068992,112072064,112074764,112075789,112078266,112078741,112081134,112087801,112090864,112093136,112108785	1.000000
tibial_nerve_female_adult_53_years	chr11	58578102	58578133	58578102	-	High_confidence	6	6	23	2.186972	4.186704	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.652174
tibial_nerve_female_adult_53_years	chr6	35650775	35650785	35650779	-	RAMPAGE_only	39	39	125	11.885718	4.807917	chr6	35650464	35650774	SINE|Alu|AluSz	-	chr6	35573589	35666367	STRG.49028.5	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35661967	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35658655,35666367	0.952000
tibial_nerve_female_adult_53_years	chr14	27673236	27673266	27673239	-	High_confidence	5	5	17	1.616458	3.454822	chr14	27673059	27679095	LINE|L1|L1PA3	+	chr14	27321921	27673221	AL390334.1|ENST00000556890.1	-	27321921,27656337,27673028	27322141,27656502,27673221	0.823529
tibial_nerve_female_adult_53_years	chr7	74877385	74877411	74877405	-	RAMPAGE_only	5	5	15	1.426286	2.842371	chr7	74877352	74877487	SINE|MIR|MIR	-	chr7	74877037	74890566	STRG.59228.4	-	74877037,74883348,74884433,74887682,74888311,74890270	74883041,74884223,74884524,74887799,74888397,74890566	0.866667
tibial_nerve_female_adult_53_years	chr20	35713352	35713424	35713423	-	High_confidence	3	3	14	1.331200	3.039149	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	1.000000
tibial_nerve_female_adult_53_years	chr6	36505073	36505091	36505073	-	RAMPAGE_only	4	4	10	0.950857	2.846439	chr6	36505057	36505226	DNA|hAT-Charlie|MER5B	+	chr6	36493891	36501431	STRG.49080.3	-	36493891,36496710,36497779,36498362	36495914,36496805,36497875,36501431	0.700000
tibial_nerve_female_adult_53_years	chr8	116648805	116648829	116648828	-	RAMPAGE_only	4	4	8	0.760686	2.807355	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.875000
tibial_nerve_female_adult_53_years	chr19	58306086	58306105	58306086	+	High_confidence	6	6	11	1.045943	2.921928	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58312462	ERVK3-1|ENST00000609864.5	+	58305376,58306087,58312020,58312165	58305445,58306216,58312061,58312462	0.545455
tibial_nerve_female_adult_53_years	chr11	62600186	62600196	62600186	-	High_confidence	3	3	8	0.760686	2.750000	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.875000
tibial_nerve_female_adult_53_years	chr16	29515828	29515829	29515828	-	RAMPAGE_only	8	8	10	0.950857	2.721928	chr16	29515801	29515907	DNA|hAT-Charlie|Charlie19a	+	chr16	29506255	29595069	STRG.108011.9	-	29506255,29528416,29528950,29530070,29533044,29533394,29536027,29537278,29538194,29538946,29539706,29539897,29540444,29541268,29541579,29545178,29546165,29548537,29551188,29553085,29554415,29554866,29558664,29560156,29561514,29565350,29566085,29594886	29527687,29528576,29529098,29530180,29533246,29533537,29536182,29537807,29538394,29539087,29539808,29539985,29540563,29541430,29541710,29545450,29546267,29548762,29551361,29553183,29554488,29554992,29558878,29560215,29561651,29565506,29566249,29595069	0.900000
tibial_nerve_female_adult_53_years	chr8	27977120	27977126	27977125	-	High_confidence	74	89	136	12.931661	6.043629	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977114	STRG.64460.3	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977114	0.786765
tibial_nerve_female_adult_53_years	chr2	232816731	232816752	232816751	+	RAMPAGE_only	18	18	50	4.754287	4.996115	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.900000
tibial_nerve_female_adult_53_years	chr11	114246774	114246775	114246774	+	High_confidence	26	26	35	3.328001	4.185867	chr11	114246569	114246781	LINE|L2|L2c	-	chr11	114246789	114250476	ZBTB16|ENST00000535509.1	+	114246789,114250325	114247365,114250476	0.914286
tibial_nerve_female_adult_53_years	chr16	69996417	69996464	69996417	-	High_confidence	4	4	9	0.855772	3.169925	chr16	69996297	69996477	SINE|MIR|MIRb	+	chr16	69976387	69996188	NPIPB14P|ENST00000532298.5	-	69976387,69978076,69978221,69982349,69982657,69986380,69996068	69976732,69978112,69978282,69982545,69982757,69986509,69996188	0.666667
tibial_nerve_female_adult_53_years	chr7	7519208	7519214	7519213	-	High_confidence	9	11	20	1.901715	4.037401	chr7	7519045	7519413	LTR|ERVL-MaLR|THE1B	-	chr7	7417631	7520073	COL28A1|ENST00000444268.1	-	7417631,7419884,7432472,7432631,7436394,7437393,7440789,7443584,7444417,7452318,7453439,7456043,7474600,7477111,7489388,7490577,7506013,7507116,7511090,7511651,7515813,7517795,7520061	7417927,7419953,7432541,7432700,7436463,7437462,7440861,7443653,7444489,7452387,7453508,7456112,7474669,7477180,7489457,7490646,7506067,7507161,7511135,7511844,7515840,7517837,7520073	0.900000
tibial_nerve_female_adult_53_years	chr22	30420266	30420278	30420266	-	High_confidence	4	5	13	1.236115	2.584963	chr22	30419937	30420252	SINE|Alu|AluSp	-	chr22	30419883	30420640	STRG.125972.1	-	30419883	30420640	0.846154
tibial_nerve_female_adult_53_years	chr8	142344147	142344167	142344166	-	RAMPAGE_only	3	3	11	1.045943	3.121928	chr8	142344146	142344350	DNA|DNA|UCON8	-	chr8	142212166	142354763	TSNARE1|ENST00000520166.5	-	142212166,142229472,142274780,142284412,142300485,142314383,142315002,142318543,142330900,142331753,142343965,142345742,142354636	142212313,142229579,142274863,142284485,142300647,142314440,142315092,142318634,142330970,142331831,142344472,142345892,142354763	0.909091
tibial_nerve_female_adult_53_years	chrX	48683361	48683363	48683362	+	High_confidence	10	16	16	1.521372	3.452820	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.937500
tibial_nerve_female_adult_53_years	chr14	92049774	92049794	92049793	-	High_confidence	5	6	9	0.855772	2.500000	chr14	92049745	92049821	LTR|ERV1|LTR7	-	chr14	92044774	92049786	ATXN3|ENST00000564606.6	-	92044774,92047895,92049602	92044958,92047987,92049786	0.888889
tibial_nerve_female_adult_53_years	chr13	80902439	80902485	80902484	+	High_confidence	3	3	9	0.855772	3.000000	chr13	80902413	80902743	SINE|Alu|AluJb	-	chr13	80902428	81009325	STRG.96264.3	+	80902428,80909202,81008056,81008516,81009264	80902558,80909300,81008127,81008696,81009325	0.888889
tibial_nerve_female_adult_53_years	chr10	45000453	45000515	45000503	+	High_confidence	8	8	29	2.757486	4.000646	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.931034
tibial_nerve_female_adult_53_years	chr17	69196620	69196782	69196620	-	RAMPAGE_only	34	34	138	13.121832	5.686996	chr17	69195559	69197005	Retroposon|SVA|SVA_B	-	chr17	69148591	69225442	ABCA10|ENST00000518929.5	-	69148591,69149032,69149983,69152042,69152361,69153304,69154234,69155018,69155804,69156831,69164073,69164963,69174280,69174606,69175405,69182152,69182674,69185476,69187680,69190357,69191175,69192562,69193109,69193492,69193813,69194384,69196245,69197063,69214703,69215814,69216216,69219544,69221791,69222532,69225324	69148925,69149088,69150063,69152183,69152481,69154009,69154326,69155136,69155925,69156923,69164154,69165083,69174394,69174777,69175513,69182290,69182808,69185643,69187879,69190477,69191315,69192653,69193248,69193612,69193989,69194495,69196483,69197122,69214851,69216000,69216358,69219771,69221895,69222697,69225442	0.876812
tibial_nerve_female_adult_53_years	chr1	1756715	1756730	1756729	-	High_confidence	4	4	10	0.950857	2.641604	chr1	1756708	1756827	LTR|ERVL-MaLR|MSTD	+	chr1	1754180	1756608	NADK|ENST00000489538.1	-	1754180,1754283,1754543,1756257,1756502	1754208,1754383,1754698,1756343,1756608	0.700000
tibial_nerve_female_adult_53_years	chr12	62559346	62559373	62559346	+	RAMPAGE_only	3	3	7	0.665600	2.521641	chr12	62559374	62559580	SINE|Alu|AluJo	+	chr12	62557991	62571519	STRG.90421.10	+	62557991,62565236,62571391	62561113,62566450,62571519	1.000000
tibial_nerve_female_adult_53_years	chr17	62520832	62520841	62520840	+	RAMPAGE_only	4	4	8	0.760686	2.521641	chr17	62520890	62521168	SINE|Alu|AluJr	+	chr17	62481120	62606241	TLK2|ENST00000581041.5	+	62481120,62520772,62522203,62523133,62536169,62553662,62560015,62565000,62573214,62576708,62578476,62580110,62586134,62596584,62600650,62602041,62606129	62481206,62520844,62522273,62523177,62536337,62553755,62560126,62565137,62573367,62576775,62578574,62580192,62586226,62596674,62600820,62602180,62606241	0.500000
tibial_nerve_female_adult_53_years	chr10	110496232	110496245	110496232	-	High_confidence	2	2	7	0.665600	2.807355	chr10	110496171	110496447	LINE|L2|L2b	+	chr10	110475103	110496204	AL355512.1|ENST00000607952.1	-	110475103,110496118	110475226,110496204	0.857143
tibial_nerve_female_adult_53_years	chr7	128463140	128463223	128463204	+	High_confidence	3	3	21	1.996801	3.689704	chr7	128462838	128464284	Retroposon|SVA|SVA_B	+	chr7	128462868	128464466	STRG.62018.3	+	128462868	128464466	0.857143
tibial_nerve_female_adult_53_years	chr22	50785254	50785272	50785254	+	RAMPAGE_only	2	2	9	0.855772	2.500000	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.888889
tibial_nerve_female_adult_53_years	chr4	173369582	173369607	173369606	-	High_confidence	14	15	22	2.091886	3.546439	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363993	173369815	AC097534.2|ENST00000608794.1	-	173363993,173369433	173364198,173369815	0.909091
tibial_nerve_female_adult_53_years	chrX	73837503	73837510	73837503	-	RAMPAGE_only	5	6	13	1.236115	3.392747	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
tibial_nerve_female_adult_53_years	chr1	144459450	144459461	144459450	-	RAMPAGE_only	11	11	23	2.186972	3.762267	chr1	144459208	144459506	SINE|Alu|AluJb	+	chr1	144448825	144456761	NBPF15|ENST00000578953.1	-	144448825,144450771,144456536	144448916,144450870,144456761	0.565217
tibial_nerve_female_adult_53_years	chr17	69067458	69067462	69067461	-	RAMPAGE_only	7	7	15	1.426286	3.456565	chr17	69067285	69067579	SINE|Alu|AluJb	+	chr17	69067274	69115442	STRG.113809.14	-	69067274,69069256,69078959,69079209,69081065,69082872,69083211,69084260,69084431,69085027,69085624,69086617,69087352,69088166,69089464,69091142,69096239,69096627,69097919,69100796,69102834,69105461,69106027,69107695,69110800,69112182,69113221,69113617,69114761,69115375	69067556,69077836,69079074,69079265,69081145,69083013,69083331,69084355,69084507,69085182,69085716,69086735,69087473,69088258,69089542,69091262,69096353,69096801,69098027,69100934,69102968,69105628,69106211,69107812,69110940,69112273,69113360,69113737,69114937,69115442	0.866667
tibial_nerve_female_adult_53_years	chr12	53464773	53464829	53464828	+	RAMPAGE_only	4	4	14	1.331200	3.521641	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.642857
tibial_nerve_female_adult_53_years	chr7	11194703	11194709	11194708	+	RAMPAGE_only	4	4	8	0.760686	2.521641	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.750000
tibial_nerve_female_adult_53_years	chr3	50230995	50230996	50230995	+	High_confidence	9	9	9	0.855772	2.947703	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	1.000000
tibial_nerve_female_adult_53_years	chr3	135965708	135965749	135965723	+	High_confidence	13	20	68	6.465830	5.013413	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.985294
tibial_nerve_female_adult_53_years	chr5	31515458	31515468	31515458	-	RAMPAGE_only	4	4	13	1.236115	3.546594	chr5	31515356	31515548	DNA|hAT-Charlie|MER5A	-	chr5	31514993	31526326	DROSHA|ENST00000512302.1	-	31514993,31515453,31526078	31515219,31515564,31526326	0.923077
tibial_nerve_female_adult_53_years	chr12	21818179	21818193	21818179	-	RAMPAGE_only	6	6	12	1.141029	2.688722	chr12	21817882	21818136	LINE|L1|L1PA8A	-	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	1.000000
tibial_nerve_female_adult_53_years	chr13	80896265	80896297	80896265	+	RAMPAGE_only	5	5	14	1.331200	3.546594	chr13	80896240	80896458	SINE|Alu|AluJb	-	chr13	80814525	81009325	STRG.96264.1	+	80814525,80823825,80896260,80898658,80902434,80909202,81008056,81008516,81009230	80814752,80823956,80896391,80898750,80902558,80909300,81008127,81008696,81009325	0.714286
tibial_nerve_female_adult_53_years	chr1	166850042	166850055	166850054	+	RAMPAGE_only	4	6	11	1.045943	3.121928	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166847474	166856344	STRG.7780.4	+	166847474,166848937,166849787	166847592,166849733,166856344	0.818182
tibial_nerve_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	104	104	104	9.888917	4.679689	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.990385
tibial_nerve_female_adult_53_years	chr21	46142707	46142708	46142707	-	High_confidence	4	4	7	0.665600	2.807355	chr21	46142201	46143045	LTR|ERV1|LTR12	-	chr21	46138546	46142694	STRG.125259.1	-	46138546,46142108	46138646,46142694	0.857143
tibial_nerve_female_adult_53_years	chr5	176411458	176411459	176411458	-	RAMPAGE_only	6	6	7	0.665600	2.584963	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.571429
tibial_nerve_female_adult_53_years	chr2	201115959	201115998	201115997	+	High_confidence	5	5	16	1.521372	3.506891	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.562500
tibial_nerve_female_adult_53_years	chr2	96303166	96303280	96303166	-	RAMPAGE_only	15	15	73	6.941259	5.096533	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.986301
tibial_nerve_female_adult_53_years	chr11	1883348	1883349	1883348	+	RAMPAGE_only	12	13	14	1.331200	3.238901	chr11	1883278	1883384	SINE|MIR|MIR1_Amn	-	chr11	1880676	1892267	LSP1|ENST00000485341.5	+	1880676,1881431,1883418,1883931,1884279,1884499,1886731,1887236,1887473,1891772	1881363,1881596,1883560,1884024,1884323,1884581,1886866,1887314,1887576,1892267	0.857143
tibial_nerve_female_adult_53_years	chr11	62824623	62824624	62824623	-	High_confidence	9	12	12	1.141029	3.022055	chr11	62824595	62824822	SINE|MIR|MIR	+	chr11	62823914	62825526	STX5|ENST00000431400.1	-	62823914,62824458,62825035,62825282,62825422	62824287,62824565,62825117,62825339,62825526	0.916667
tibial_nerve_female_adult_53_years	chr17	42117145	42117146	42117145	-	High_confidence	5	5	7	0.665600	2.521641	chr17	42117078	42117181	LINE|CR1|L3	+	chr17	42113389	42117489	STRG.112078.3	-	42113389,42113999,42114357,42114489,42114891,42115722,42117034,42117387	42113842,42114282,42114394,42114604,42115035,42115833,42117161,42117489	0.857143
tibial_nerve_female_adult_53_years	chr8	143281669	143281679	143281678	-	High_confidence	5	5	14	1.331200	3.324863	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281250	MINCR|ENST00000519852.5	-	143280827,143281092	143280997,143281250	0.500000
tibial_nerve_female_adult_53_years	chr1	52913975	52914003	52914002	-	RAMPAGE_only	3	3	9	0.855772	2.750000	chr1	52913984	52914299	LINE|L2|L2b	-	chr1	52913719	52921721	ECHDC2|ENST00000474789.1	-	52913719,52921552	52914095,52921721	0.555556
tibial_nerve_female_adult_53_years	chr11	65438494	65438510	65438509	+	RAMPAGE_only	3	3	7	0.665600	2.584963	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.857143
tibial_nerve_female_adult_53_years	chr8	57746128	57746129	57746128	+	High_confidence	22	23	23	2.186972	3.356492	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	0.956522
tibial_nerve_female_adult_53_years	chr2	38083051	38083101	38083053	+	High_confidence	5	8	23	2.186972	3.879664	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.739130
tibial_nerve_female_adult_53_years	chr2	171414675	171414676	171414675	-	RAMPAGE_only	11	11	11	1.045943	3.095795	chr2	171414444	171414743	SINE|Alu|AluJb	+	chr2	171331807	171433116	METTL8|ENST00000460539.5	-	171331807,171339183,171392042,171433025	171331867,171339554,171392197,171433116	0.545455
tibial_nerve_female_adult_53_years	chr6	169655197	169655224	169655197	-	High_confidence	3	3	7	0.665600	2.807355	chr6	169654862	169655164	LTR|ERV1|MER41G	-	chr6	169638565	169655545	STRG.55114.5	-	169638565,169654997	169638660,169655545	0.857143
tibial_nerve_female_adult_53_years	chr15	34400744	34400754	34400744	-	RAMPAGE_only	5	6	10	0.950857	3.121928	chr15	34400639	34400739	LINE|CR1|L3	-	chr15	34379067	34399282	STRG.101994.5	-	34379067,34381700,34381967,34382150,34382385,34382796,34383440,34383745,34383960,34385047,34385253,34385426,34385739,34386624,34387832,34389643,34391122,34398633,34399154	34381613,34381856,34382068,34382251,34382529,34383053,34383528,34383853,34384047,34385157,34385338,34385474,34385778,34387263,34387952,34389768,34391426,34398729,34399282	1.000000
tibial_nerve_female_adult_53_years	chr4	522048	522058	522048	+	RAMPAGE_only	5	5	10	0.950857	2.947703	chr4	522014	522062	LINE|L2|L2c	-	chr4	499288	522843	PIGG|ENST00000509768.1	+	499288,500395,505717,507404,508828,515972,521055,521659	500047,500601,505927,507593,508970,516185,521273,522843	0.800000
tibial_nerve_female_adult_53_years	chr1	176162892	176162937	176162936	-	RAMPAGE_only	5	6	20	1.901715	3.821928	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	176116645	176206440	COP1|ENST00000491600.5	-	176116645,176135009,176136487,176149005,176162868,176163814,176168664,176175909,176184632,176206348	176116681,176135086,176136547,176149074,176162988,176163891,176168748,176176007,176184692,176206440	0.900000
tibial_nerve_female_adult_53_years	chr21	28626636	28626672	28626671	-	High_confidence	4	4	13	1.236115	3.188722	chr21	28626563	28626693	SINE|Alu|AluJr	+	chr21	28444548	28626604	AF165147.1|ENST00000430247.1	-	28444548,28446289,28482956,28577274,28626584	28444809,28446472,28483069,28577380,28626604	0.846154
tibial_nerve_female_adult_53_years	chr3	16226398	16226399	16226398	+	RAMPAGE_only	31	31	35	3.328001	4.337175	chr3	16226342	16226723	LTR|ERVL-MaLR|MSTA	-	chr3	16222668	16226762	GALNT15|ENST00000650034.1	+	16222668,16226428	16222758,16226762	0.942857
tibial_nerve_female_adult_53_years	chr7	98240861	98240896	98240877	-	RAMPAGE_only	3	3	12	1.141029	2.845351	chr7	98240718	98240843	SINE|Alu|AluJr	-	chr7	98233426	98246123	TECPR1|ENST00000471397.1	-	98233426,98236775,98245921	98233911,98236862,98246123	0.500000
tibial_nerve_female_adult_53_years	chr8	2726956	2726963	2726962	+	High_confidence	7	7	19	1.806629	3.794653	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727053	2834519	STRG.63355.1	+	2727053,2804585,2834348	2727493,2804709,2834519	0.894737
tibial_nerve_female_adult_53_years	chr1	33021381	33021417	33021416	-	RAMPAGE_only	11	11	30	2.852572	4.040224	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	1.000000
tibial_nerve_female_adult_53_years	chr4	86453149	86453203	86453202	-	High_confidence	3	3	17	1.616458	2.727217	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.764706
tibial_nerve_female_adult_53_years	chr18	48621491	48621539	48621522	+	High_confidence	5	7	24	2.282058	4.055958	chr18	48621468	48621857	LINE|L2|L2a	-	chr18	48621443	48711657	CTIF|ENST00000589585.1	+	48621443,48636613,48663751,48664446,48670668,48711618	48621641,48636685,48663825,48664551,48670744,48711657	0.666667
tibial_nerve_female_adult_53_years	chr16	68273827	68273828	68273827	+	High_confidence	7	7	11	1.045943	2.913977	chr16	68273775	68274059	SINE|Alu|AluSc5	-	chr16	68272978	68275095	SLC7A6|ENST00000568024.1	+	68272978,68273794,68274690	68273044,68273904,68275095	0.636364
tibial_nerve_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	36	36	38	3.613258	3.634894	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.947368
tibial_nerve_female_adult_53_years	chr19	10825211	10825212	10825211	+	RAMPAGE_only	7	7	7	0.665600	2.807355	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	1.000000
tibial_nerve_female_adult_53_years	chrX	101256246	101256254	101256246	+	RAMPAGE_only	4	4	9	0.855772	3.000000	chrX	101256265	101256528	SINE|MIR|MIRb	+	chrX	101234553	101264488	STRG.130675.4	+	101234553,101235859,101237618,101238980,101241667,101242324,101242903,101245016,101245387,101247089,101248088,101248513,101250422,101250916,101252604,101254424,101254858,101255183,101256117,101258308,101260048,101260496	101234682,101236023,101237775,101239101,101241936,101242471,101242982,101245077,101245449,101247164,101248290,101248599,101250580,101251083,101252716,101254561,101254924,101255249,101256261,101258546,101260169,101264488	0.888889
tibial_nerve_female_adult_53_years	chr5	96746260	96746273	96746260	+	RAMPAGE_only	2	2	7	0.665600	2.521641	chr5	96746196	96746292	SINE|MIR|MIRc	-	chr5	96743626	96774679	CAST|ENST00000325674.11	+	96743626,96746341,96747344,96748517,96750586,96754059,96754657,96757443,96757582,96762273,96765223,96766052,96767437,96767906,96770530,96771643,96772639	96743746,96746425,96747392,96748613,96750682,96754161,96754741,96757494,96757654,96762372,96765325,96766145,96767482,96767999,96770602,96771702,96774679	1.000000
tibial_nerve_female_adult_53_years	chr9	128921399	128921400	128921399	+	High_confidence	18	18	21	1.996801	3.636894	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.904762
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	155719045	155719046	155719045	-	RAMPAGE_only	8	9	12	0.669780	3.459432	chrX	155718901	155722240	LINE|L1|L1M1	+	chrX	155489010	155612961	TMLHE|NM_018196.3	-	155489010,155492356,155506897,155511672,155513985,155524455,155545095,155612791	155491666,155492495,155507134,155511792,155514265,155524632,155545277,155612961	0.583333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	80231057	80231058	80231057	-	High_confidence	33	35	39	2.176786	4.826875	chr14	80230830	80231256	LTR|ERVL|MLT2A1	-	chr14	80197524	80231054	DIO2|NM_000793.5	-	80197524,80211250,80215971,80230900	80203288,80211525,80216150,80231054	0.820513
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	158167223	158167224	158167223	-	High_confidence	11	11	16	0.893041	3.773557	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158127544	158167212	MSTRG.33263.5	-	158127544,158155610,158167176	158131012,158155825,158167212	0.625000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	76246774	76246814	76246774	-	High_confidence	28	28	113	6.307099	6.165620	chr18	76246640	76247080	LTR|ERVL-MaLR|MLT1C	-	chr18	76219628	76246823	MSTRG.20498.1	-	76219628,76246720	76225040,76246823	0.513274
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	216655432	216655433	216655432	+	RAMPAGE_only	8	8	8	0.446520	3.000000	chr2	216655238	216655617	LTR|ERVL-MaLR|THE1D	+	chr2	216659617	216664436	IGFBP2|NM_001313990.1	+	216659617,216660556,216661857,216663939	216659746,216660786,216661998,216664436	0.750000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	34154833	34154834	34154833	-	High_confidence	7	7	8	0.446520	2.521641	chr15	34154725	34155010	LTR|ERV1|LTR10A	-	chr15	34147202	34154831	KATNBL1|ENST00000560308.5	-	34147202,34147379,34148631,34152789,34154643	34147289,34147430,34148750,34153069,34154831	0.750000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	158172987	158173025	158173024	-	High_confidence	87	88	147	8.204810	6.253016	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.877551
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	28854718	28854719	28854718	-	RAMPAGE_only	7	8	10	0.558150	2.921928	chr21	28854444	28854926	LTR|ERVL|MLT2A1	-	chr21	28439345	28674848	AF165147.1|ENST00000433310.6	-	28439345,28446289,28577218,28626584,28674646	28444809,28446472,28577380,28626676,28674848	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	117454947	117454953	117454949	+	High_confidence	8	14	24	1.339561	3.772055	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.916667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	28291847	28291848	28291847	+	High_confidence	7	7	7	0.390705	2.521641	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.571429
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	217909698	217909744	217909698	-	RAMPAGE_only	4	4	11	0.613965	3.027169	chr2	217909603	217909688	DNA|hAT-Charlie|MER5A	-	chr2	217848883	217905461	TNS1|ENST00000413554.5	-	217848883,217880897,217882345,217885034,217885743,217886043,217886533,217890961,217892947,217893438,217895005,217897797,217900462,217905295	217849087,217881014,217882411,217885164,217885819,217886104,217886646,217891045,217893012,217893561,217895056,217897969,217900512,217905461	0.909091
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	54310442	54310462	54310446	-	High_confidence	5	6	17	0.948856	3.616875	chr5	54310446	54310538	DNA|TcMar-Tigger|Tigger15a	+	chr5	53886444	54310415	ARL15|ENST00000510591.6	-	53886444,54113201,54154579,54171783,54310294	53886713,54113410,54154639,54171928,54310415	0.705882
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	16277868	16277951	16277868	+	RAMPAGE_only	9	10	42	2.344231	4.668170	chr6	16277565	16277912	LINE|L2|L2b	-	chr6	16289517	16295544	GMPR|ENST00000544145.1	+	16289517,16290461,16295005	16289568,16290621,16295544	0.857143
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	147382883	147382900	147382899	+	High_confidence	5	5	16	0.893041	3.625000	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.750000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	58578123	58578133	58578123	-	High_confidence	2	3	11	0.613965	3.277613	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.545455
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	45825271	45825285	45825284	-	RAMPAGE_only	11	11	18	1.004671	3.239098	chr20	45825009	45825275	SINE|Alu|AluJr	-	chr20	45823213	45827314	TNNC2|NM_003279.2	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827314	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	52641402	52641412	52641402	-	RAMPAGE_only	4	4	12	0.669780	2.918296	chr14	52641319	52641634	SINE|Alu|AluY	+	chr14	52639915	52695705	ERO1A|ENST00000395686.7	-	52639915,52646153,52646374,52652238,52653068,52657916,52658123,52661292,52663800,52666374,52671629,52671794,52678433,52682324,52683787,52695367	52643630,52646287,52646461,52652308,52653315,52658009,52658150,52661304,52663847,52666495,52671703,52671871,52678472,52682408,52683907,52695705	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	6918647	6918667	6918647	-	High_confidence	2	2	7	0.390705	2.584963	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6916850	6918663	RNF144A-AS1|ENST00000439208.1	-	6916850,6918280	6917224,6918663	0.857143
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	31533506	31533520	31533506	+	High_confidence	3	3	9	0.502335	2.947703	chr3	31533377	31533564	LINE|L1|L1M4b	-	chr3	31533624	31617005	STT3B|ENST00000462235.5	+	31533624,31576395,31579808,31596797,31600359,31615104,31616928	31533686,31576504,31580096,31596863,31600459,31615203,31617005	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	48683362	48683363	48683362	+	High_confidence	11	16	16	0.893041	3.625000	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	50756934	50756950	50756949	+	High_confidence	6	6	11	0.613965	3.095795	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.545455
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	100919772	100919828	100919783	-	RAMPAGE_only	4	5	26	1.451191	4.251629	chr8	100919701	100920019	LTR|ERV1|MER34B-int	-	chr8	100918575	100950571	YWHAZ|NM_001135702.1	-	100918575,100923954,100924134,100924915,100948595,100950405	100920752,100924050,100924298,100925039,100948900,100950571	0.923077
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100929920	100929921	100929920	+	RAMPAGE_only	86	90	99	5.525688	5.619639	chr14	100929864	100929989	LINE|L1|L1ME5	+	chr14	100907042	100947076	MSTRG.13609.70	+	100907042,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100931545,100935881,100937488,100938956,100940450,100942838,100944925,100947076	0.969697
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	5726324	5726325	5726324	-	High_confidence	44	50	56	3.125642	5.115374	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.660714
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	131522829	131522830	131522829	-	RAMPAGE_only	5	5	8	0.446520	2.807355	chr5	131522682	131523194	LINE|L1|L1MEg	+	chr5	131472089	131533006	RAPGEF6|ENST00000514179.5	-	131472089,131479612,131489545,131492581,131495552,131498442,131504625,131505363,131508070,131510313,131511292,131521389,131532100,131532961	131472744,131479753,131489654,131492785,131495660,131498518,131504778,131505522,131508207,131510491,131511301,131521521,131532194,131533006	0.875000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	130497232	130497233	130497232	+	High_confidence	6	7	9	0.502335	2.725481	chr7	130497281	130497565	SINE|Alu|AluSx	+	chr7	130498225	130505298	MEST|ENST00000463263.1	+	130498225,130498418,130499874,130500461,130500834,130502643,130503932,130504938	130498275,130498477,130499915,130500518,130500890,130502720,130503996,130505298	0.777778
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	10706012	10706016	10706012	+	RAMPAGE_only	34	34	56	3.125642	5.063000	chr17	10705694	10706186	LINE|L2|L2a	-	chr17	10704899	10711230	ADPRM|ENST00000609540.1	+	10704899,10706437,10710833	10705527,10706550,10711230	0.982143
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	112995629	112995671	112995629	-	High_confidence	34	34	95	5.302428	5.671076	chr7	112995411	112995725	LINE|L2|L2	+	chr7	112954645	112995634	HRAT17|ENST00000451962.5	-	112954645,112956521,112973604,112980045,112986535,112995567	112954768,112956702,112973672,112980164,112986664,112995634	0.652632
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	20658312	20658347	20658346	+	High_confidence	9	11	46	2.567492	3.886541	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658315	20694520	MSTRG.43493.2	+	20658315,20694519	20658826,20694520	0.586957
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	7555293	7555320	7555304	-	RAMPAGE_only	21	21	46	2.567492	4.317053	chr7	7555240	7555694	LTR|ERVL|LTR16A	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.934783
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	101550438	101550468	101550467	+	High_confidence	5	5	12	0.669780	2.845351	chrX	101550258	101550488	LINE|L1|L1M5	+	chrX	101550530	101554700	ARMCX1|ENST00000372829.7	+	101550530,101550970,101551568,101552808	101550660,101551024,101551633,101554700	0.916667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	11507459	11507486	11507459	-	RAMPAGE_only	2	2	7	0.390705	2.521641	chr19	11507282	11507445	SINE|Alu|FRAM	-	chr19	11505957	11513168	ECSIT|ENST00000592571.1	-	11505957,11507456,11507701,11507990,11510616,11513055	11506428,11507562,11507850,11508048,11510660,11513168	0.857143
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	79631273	79631329	79631302	+	High_confidence	57	57	243	13.563053	6.154564	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.987654
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	154191908	154191923	154191922	-	High_confidence	4	6	14	0.781410	3.026987	chr1	154191808	154191898	LINE|CR1|L3	-	chr1	154157317	154192058	TPM3|ENST00000271850.11	-	154157317,154170399,154170648,154172028,154172907,154173083,154176114,154191185,154191901	154157721,154170469,154170711,154172104,154172978,154173201,154176248,154191311,154192058	0.857143
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	105458215	105458216	105458215	+	RAMPAGE_only	7	7	10	0.558150	2.646439	chr9	105457577	105458817	LTR|ERV1|LTR2752	-	chr9	105448122	105546602	FSD1L|ENST00000484973.5	+	105448122,105464235,105468192,105471903,105479353,105484380,105506398,105508616,105512806,105534495,105535066,105539262,105546357	105448235,105464331,105468324,105472005,105479376,105484502,105506608,105508715,105512936,105534593,105535318,105539351,105546602	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	46266534	46266555	46266534	-	High_confidence	5	5	10	0.558150	2.846439	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	113078001	113078003	113078002	+	RAMPAGE_only	10	17	18	1.004671	3.969816	chr2	113077919	113078146	LINE|L2|L2c	-	chr2	113111115	113134013	IL1RN|ENST00000409052.5	+	113111115,113112999,113120065,113121447,113127688,113129575,113131044,113132655,113133602	113111199,113113114,113120128,113121618,113127740,113129664,113131157,113133460,113134013	0.833333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	109009957	109010002	109009957	+	RAMPAGE_only	2	2	10	0.558150	3.321928	chr5	109009885	109010094	LTR|ERVL-MaLR|MLT1H	-	chr5	108924605	109196841	FER|NM_001308031.1	+	108924605,108946129,108954728,108959224,109037421,109044679,109047103,109100395,109180746,109186199,109187432	108924789,108946222,108954932,108959347,109037478,109044795,109047198,109100519,109180901,109186322,109196841	0.600000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	127093742	127093743	127093742	-	RAMPAGE_only	5	5	7	0.390705	2.584963	chr2	127093177	127093806	LTR|ERV1|MER39	+	chr2	127048022	127084550	BIN1|NM_001320642.1	-	127048022,127050420,127050801,127051153,127052254,127053421,127053904,127057472,127059010,127062114,127063570,127063932,127068162,127068923,127069994,127070552,127070761,127076625,127083588	127048633,127050522,127050912,127051243,127052362,127053445,127054012,127057601,127059155,127062197,127063646,127064018,127068255,127069031,127070090,127070647,127070816,127076706,127084550	0.857143
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	13794241	13794242	13794241	-	RAMPAGE_only	5	5	7	0.390705	2.521641	chr6	13794117	13794268	SINE|Alu|FLAM_C	-	chr6	13787133	13801345	MCUR1|ENST00000607303.1	-	13787133,13788645,13791877,13793893,13798832,13800340,13801287	13787355,13788704,13791992,13793947,13798904,13800382,13801345	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	77369150	77369167	77369166	-	RAMPAGE_only	8	9	26	1.451191	4.293661	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77273027	77273307	MSTRG.37361.1	-	77273027	77273307	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	52955040	52955041	52955040	+	RAMPAGE_only	10	10	10	0.558150	2.646439	chr6	52955078	52955376	SINE|Alu|AluSz6	+	chr6	52995619	52995950	RF00100|ENST00000365328.1	+	52995619	52995950	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	153478407	153478449	153478409	-	High_confidence	47	69	132	7.367584	5.582381	chr7	153478116	153481370	LINE|L1|L1MA4A	+	chr7	153475174	153478452	MSTRG.41106.1	-	153475174	153478452	0.833333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	102083129	102083246	102083165	-	RAMPAGE_only	8	8	76	4.241943	5.367096	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.986842
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	40987037	40987058	40987057	-	High_confidence	29	34	66	3.683792	5.463113	chr17	40986869	40987070	LINE|L2|L2c	+	chr17	40977715	40987001	KRT40|ENST00000461923.5	-	40977715,40978803,40980784,40980989,40982306,40983045,40983826,40986303,40986921	40978296,40979024,40980910,40981324,40982463,40983128,40984274,40986374,40987001	0.833333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	47780100	47780108	47780107	+	High_confidence	26	35	49	2.734937	5.011842	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.959184
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	45825348	45825406	45825369	-	RAMPAGE_only	54	56	267	14.902614	4.974636	chr20	45825287	45825591	SINE|Alu|AluSx	-	chr20	45823213	45827314	TNNC2|NM_003279.2	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827314	0.996255
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	107719695	107719701	107719695	-	High_confidence	67	68	107	5.972209	5.236703	chr11	107719646	107719884	LTR|Gypsy?|LTR88c	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.962617
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	6208681	6208682	6208681	-	High_confidence	75	75	75	4.186128	3.465601	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.960000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	201115924	201115984	201115931	+	High_confidence	6	6	20	1.116301	3.471354	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.800000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	761104	761115	761114	+	High_confidence	4	4	8	0.446520	3.000000	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.875000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	643625	643636	643635	-	High_confidence	8	8	26	1.451191	3.372879	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.961538
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	99282785	99282822	99282785	-	RAMPAGE_only	11	11	20	1.116301	3.684184	chr4	99282766	99282919	DNA|hAT-Charlie|MER5B	+	chr4	99281814	99291003	ADH1A|ENST00000503461.5	-	99281814,99284398,99284672,99286849,99287563,99290896	99282606,99284528,99284803,99286988,99287665,99291003	0.550000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	19386369	19386409	19386369	-	High_confidence	1	1	9	0.502335	3.000000	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.888889
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	60182527	60182551	60182550	-	High_confidence	7	7	18	1.004671	3.969816	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60172014	60183040	MS4A6A|ENST00000420732.6	-	60172014,60173027,60175505,60178259,60179830,60181580,60182977	60172253,60173129,60175611,60178316,60179965,60181741,60183040	0.722222
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	134485415	134485489	134485443	-	High_confidence	10	10	59	3.293087	5.163763	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.932203
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	57451499	57451546	57451523	+	RAMPAGE_only	3	3	22	1.227931	3.697846	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	19344364	19344389	19344388	-	RAMPAGE_only	5	5	15	0.837226	3.235926	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.933333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	139647357	139647358	139647357	-	RAMPAGE_only	43	43	50	2.790752	5.038319	chr4	139647213	139647611	LINE|L2|L2b	+	chr4	139618135	139623232	AC112236.1|ENST00000561977.1	-	139618135,139623100	139619101,139623232	0.520000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	48492767	48492788	48492783	-	High_confidence	6	6	16	0.893041	3.452820	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.875000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	127876015	127876020	127876015	-	RAMPAGE_only	5	5	13	0.725595	3.334679	chr9	127875960	127876265	LINE|L2|L2c	+	chr9	127867998	127875007	AK1|ENST00000373156.5	-	127867998,127868320,127871822,127872689,127873025,127874610,127874876	127868076,127868512,127871939,127872853,127873061,127874649,127875007	0.692308
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	108380019	108380034	108380033	-	High_confidence	5	5	11	0.613965	3.121928	chr5	108379933	108380070	SINE|MIR|MIRb	+	chr5	107878236	108380613	MSTRG.34829.4	-	107878236,108020924,108186116,108224120,108348398,108364737,108367830,108379893,108380520	107881179,108021001,108186247,108224228,108348530,108364995,108367953,108379910,108380613	0.818182
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	240022181	240022216	240022197	-	RAMPAGE_only	4	5	17	0.948856	2.977217	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.882353
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	38468405	38468437	38468436	-	High_confidence	6	6	10	0.558150	2.921928	chr5	38468426	38468568	SINE|MIR|MIRc	-	chr5	38466162	38468339	AC010457.1|ENST00000510137.1	-	38466162,38468238	38466398,38468339	0.800000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	38612580	38612626	38612625	+	RAMPAGE_only	14	14	67	3.739607	5.311920	chrX	38612500	38614189	LINE|L1|HAL1	-	chrX	38611580	38688920	MSTRG.45411.18	+	38611580,38666120,38671375,38674220,38675704,38681203,38687598,38687938	38612666,38666309,38671450,38674316,38675860,38681287,38687674,38688920	0.985075
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	42415423	42415452	42415423	-	RAMPAGE_only	3	3	11	0.613965	2.550341	chr15	42415122	42415421	SINE|Alu|AluSq2	-	chr15	42412822	42457532	ZNF106|ENST00000263805.8	-	42412822,42417804,42421060,42421916,42422500,42423997,42424833,42428017,42435383,42437231,42438611,42439032,42442072,42444201,42444826,42446588,42448071,42449770,42456957	42417360,42417951,42421132,42421988,42422620,42424060,42425025,42428134,42435518,42437377,42438667,42439813,42442414,42444262,42444981,42446658,42448705,42451954,42457532	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	189309866	189309890	189309866	+	High_confidence	5	5	12	0.669780	3.251629	chr3	189309787	189309871	LINE|RTE-BovB|MamRTE1	+	chr3	189309893	189315595	TPRG1|ENST00000481307.1	+	189309893,189310385,189315492	189310177,189310539,189315595	0.833333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	35412729	35412764	35412763	+	RAMPAGE_only	4	5	16	0.893041	3.056565	chr10	35412569	35412888	SINE|Alu|AluSx	+	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.812500
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	47067498	47067534	47067498	-	High_confidence	115	127	473	26.400511	5.890024	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.906977
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	21876237	21876247	21876237	-	RAMPAGE_only	7	7	13	0.725595	3.392747	chr1	21876092	21876241	LINE|L2|L2c	+	chr1	21822231	21937297	HSPG2|NM_005529.6	-	21822231,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174,21937154	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896310,21937297	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	65642904	65642934	65642906	+	High_confidence	3	6	26	1.451191	4.363713	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	21875639	21875640	21875639	-	High_confidence	4	4	6	0.334890	2.584963	chr1	21875470	21875616	SINE|MIR|MIRb	-	chr1	21872858	21874706	HSPG2|ENST00000427897.1	-	21872858,21873374,21873924,21874405,21874615	21873091,21873424,21874011,21874533,21874706	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	110170695	110170731	110170695	+	RAMPAGE_only	5	5	20	1.116301	3.621928	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	10363964	10363965	10363964	+	High_confidence	7	7	10	0.558150	2.947703	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	120534000	120534044	120534031	-	RAMPAGE_only	39	39	200	11.163007	6.415579	chr9	120533823	120534313	LINE|L2|L2c	+	chr9	120518599	120532555	CDK5RAP2|ENST00000482047.1	-	120518599,120524985,120527805,120528743,120529977,120532466	120518645,120525078,120527925,120528797,120530140,120532555	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	28226064	28226065	28226064	+	RAMPAGE_only	8	8	9	0.502335	2.500000	chr12	28226041	28226162	LTR|ERVL-MaLR|MLT1L	+	chr12	28256003	28549240	CCDC91|ENST00000543809.5	+	28256003,28257201,28259363,28305648,28306741,28307644,28362437,28391303,28412753,28450160,28450349,28452477,28484051,28549062	28256078,28257245,28259442,28305806,28306945,28307749,28362515,28391411,28412938,28450253,28450418,28452654,28484165,28549240	0.777778
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	8351847	8351848	8351847	-	RAMPAGE_only	12	12	12	0.669780	3.251629	chr21	8350922	8352925	Retroposon|SVA|SVA_D	-	chr21	8210383	8211306	FP671120.3|ENST00000631211.1	-	8210383	8211306	0.583333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	54264971	54265030	54265029	+	RAMPAGE_only	4	4	32	1.786081	3.869577	chr4	54265070	54265216	SINE|MIR|MIR3	+	chr4	54229310	54281978	PDGFRA|ENST00000509490.5	+	54229310,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54278818,54280315,54281580	54229415,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54278971,54280482,54281978	0.937500
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	1526621	1526643	1526621	+	High_confidence	2	2	8	0.446520	2.750000	chr10	1526359	1526763	LTR|ERVL-MaLR|MSTB1	+	chr10	1526629	1556984	ADARB2-AS1|NR_033387.1	+	1526629,1556610	1526899,1556984	0.750000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	21075853	21075856	21075853	+	High_confidence	13	13	27	1.507006	3.411602	chr17	21075733	21075870	LINE|L2|L2a	-	chr17	21075555	21090615	LINC01563|ENST00000456235.1	+	21075555,21090267	21075957,21090615	0.703704
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	28135343	28135423	28135412	+	RAMPAGE_only	8	8	34	1.897711	4.675698	chr21	28135237	28135794	LTR|ERVL|MLT2B3	+	chr21	28048413	28137609	LOC284825|NR_126010.1	+	28048413,28102549,28130529,28135313,28136689	28048537,28102769,28130622,28135708,28137609	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	72135708	72135725	72135724	+	High_confidence	6	6	19	1.060486	3.826875	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	29647319	29647361	29647319	+	High_confidence	4	4	18	1.004671	3.947703	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.944444
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	14753461	14753487	14753477	-	High_confidence	4	4	12	0.669780	2.625815	chr21	14753142	14753541	LINE|L1|L1M3c	+	chr21	14746761	14753863	AF127936.2|ENST00000455253.6	-	14746761,14750862,14753800	14748375,14750909,14753863	0.583333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	66372460	66372480	66372460	-	High_confidence	4	4	9	0.502335	2.725481	chr11	66372296	66372448	DNA|hAT-Tip100|ORSL-2b	-	chr11	66362520	66372476	SLC29A2|NM_001300868.1	-	66362520,66364224,66365935,66366125,66366430,66367463,66367771,66368536,66369059,66369368,66371243,66371562,66372009,66372357	66363547,66364424,66366021,66366231,66366564,66367548,66367869,66368671,66369199,66369532,66371325,66371646,66372265,66372476	0.777778
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	80927195	80927241	80927195	-	RAMPAGE_only	18	19	39	2.176786	4.509385	chr14	80925611	80928702	LINE|L1|L1PB3	+	chr14	80496473	80939540	CEP128|ENST00000281129.7	-	80496473,80504911,80526868,80530808,80559278,80580373,80743074,80756891,80761436,80777881,80784894,80792759,80831142,80836204,80838203,80840681,80862756,80895717,80899937,80904812,80905954,80914321,80916400,80939384	80497582,80505020,80526982,80530886,80559302,80580423,80743267,80756951,80761613,80778046,80785545,80793110,80831294,80836337,80838278,80840768,80862873,80895790,80900029,80904931,80906081,80914408,80916562,80939540	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	4239748	4239749	4239748	-	High_confidence	9	9	11	0.613965	2.913977	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.727273
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	23	23	23	1.283746	3.381620	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	90233691	90233692	90233691	+	RAMPAGE_only	15	18	19	1.060486	3.725481	chr14	90233487	90233938	LTR|ERVL|MLT2A2	+	chr14	90256494	90275429	PSMC1|ENST00000261303.12	+	90256494,90259159,90260114,90263317,90263661,90264040,90265069,90268223,90269396,90270197,90272272	90256600,90259213,90260211,90263442,90263847,90264169,90265166,90268413,90269548,90270352,90275429	0.578947
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	46087042	46087066	46087042	-	High_confidence	6	6	16	0.893041	3.106891	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	64226142	64226209	64226158	-	High_confidence	84	86	573	31.982014	6.917826	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.965096
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	159005961	159005962	159005961	+	High_confidence	22	22	25	1.395376	3.973661	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.960000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	12522253	12522266	12522253	+	RAMPAGE_only	8	8	17	0.948856	2.977217	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.882353
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	6590251	6590293	6590292	+	High_confidence	3	3	12	0.669780	3.095795	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	107542747	107542753	107542747	+	High_confidence	11	12	26	1.451191	4.392747	chr2	107542342	107542809	LTR|ERVL|MER70A	-	chr2	107542748	107555639	LINC01886|ENST00000439893.1	+	107542748,107555132	107542821,107555639	0.653846
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	29077486	29077501	29077486	+	High_confidence	6	8	19	1.060486	3.576618	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077474	29091576	MAP3K7CL|ENST00000419845.5	+	29077474,29080551,29085812,29091500	29077713,29080708,29085917,29091576	0.631579
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	143853173	143853229	143853228	-	RAMPAGE_only	7	7	40	2.232601	4.754378	chr7	143853075	143853314	SINE|Alu|AluJr	-	chr7	143851367	143885373	TCAF1|NM_001206941.1	-	143851367,143857099,143858823,143860207,143861094,143862415,143862801,143885209	143854142,143857350,143859161,143860447,143861308,143862513,143863796,143885373	0.950000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	55851364	55851383	55851364	+	High_confidence	7	7	21	1.172116	3.821928	chr5	55851124	55851720	DNA|TcMar-Tigger|Tigger17a	-	chr5	55851378	55909141	IL31RA|NM_001297570.1	+	55851378,55859508,55868790,55872269,55883043,55889969,55896349,55899915,55906105,55907358,55908264	55851633,55859599,55868908,55872451,55883195,55890135,55896429,55900132,55906288,55907460,55909141	0.761905
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	212233397	212233430	212233406	-	RAMPAGE_only	61	64	149	8.316440	5.346782	chr1	212233221	212233468	LINE|CR1|L3b	-	chr1	212225277	212234546	AL451060.1|ENST00000443448.5	-	212225277,212230202,212234502	212225513,212230259,212234546	0.959732
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	72220310	72220311	72220310	+	RAMPAGE_only	9	9	9	0.502335	2.725481	chr10	72220047	72220353	SINE|Alu|AluSp	+	chr10	72223132	72233829	ANAPC16|ENST00000470481.2	+	72223132,72230365,72233000	72224056,72230440,72233829	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	106450815	106450822	106450821	+	High_confidence	16	21	35	1.953526	4.657882	chr9	106450433	106450967	LTR|ERVL-MaLR|MLT1G1	+	chr9	106450815	106604795	LINC01505|ENST00000425709.1	+	106450815,106558471,106588376,106603755	106450888,106558583,106588464,106604795	0.685714
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	74000281	74000306	74000305	+	RAMPAGE_only	2	2	6	0.334890	2.584963	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.833333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	76773096	76773113	76773096	+	High_confidence	11	11	22	1.227931	4.277613	chr17	76772816	76773304	LINE|L1|L1MEc	-	chr17	76773096	76778338	MFSD11|ENST00000590070.1	+	76773096,76774996,76776405,76778187	76773351,76775171,76776541,76778338	0.727273
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	12514052	12514060	12514054	+	RAMPAGE_only	7	9	19	1.060486	3.826875	chr3	12513979	12514484	LINE|L2|L2b	-	chr3	12529778	12539288	TSEN2|ENST00000455118.5	+	12529778,12531569,12532661,12538801	12529873,12531659,12532773,12539288	0.631579
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	8600707	8600726	8600707	+	High_confidence	2	2	8	0.446520	2.807355	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.625000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	79631441	79631476	79631441	+	High_confidence	2	2	11	0.613965	2.921928	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.818182
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	129752862	129752906	129752905	-	High_confidence	3	3	11	0.613965	2.845351	chr8	129752564	129757710	LINE|L1|L1MA2	+	chr8	129748195	129752886	GSDMC|ENST00000522273.5	-	129748195,129749451,129749989,129750430,129751541,129751861,129752105,129752697	129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752886	0.909091
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	18076304	18076305	18076304	-	High_confidence	6	8	8	0.446520	3.000000	chr8	18076044	18076387	LINE|L2|L2c	+	chr8	18066766	18076305	ASAH1|ENST00000637872.1	-	18066766,18069791,18071299,18075540,18076176	18067298,18069878,18071390,18075587,18076305	0.750000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	74199380	74199405	74199404	+	High_confidence	27	28	55	3.069827	4.649275	chr8	74199086	74199513	LINE|L2|L2a	+	chr8	74199395	74208441	AC087627.1|ENST00000522339.2	+	74199395,74207358,74207720	74199532,74207493,74208441	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	238486034	238486037	238486036	-	High_confidence	4	8	12	0.669780	3.027169	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.750000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	128921939	128921961	128921960	+	High_confidence	3	3	9	0.502335	2.500000	chr9	128921893	128921999	SINE|MIR|MIR3	-	chr9	128921747	128940442	PHYHD1|ENST00000426694.5	+	128921747,128922282,128927037,128933781,128934010,128936447,128936582,128937756,128940368	128922047,128922356,128927196,128933857,128934058,128936503,128936645,128937778,128940442	0.777778
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	54639841	54639857	54639841	-	High_confidence	2	2	11	0.613965	3.121928	chr3	54639752	54640204	LTR|ERV1|LTR7	-	chr3	54632121	54639857	ESRG|ENST00000583516.1	-	54632121,54633558,54634460,54637690	54632807,54633740,54634565,54639857	0.818182
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	64293377	64293380	64293377	-	High_confidence	5	7	13	0.725595	3.418296	chr12	64287349	64293377	LINE|L1|L1PA2	-	chr12	64266982	64293383	C12orf56|ENST00000536975.5	-	64266982,64270535,64274900,64275297,64277679,64284663,64285953,64293280	64267288,64270714,64274975,64275372,64277803,64284753,64286060,64293383	0.769231
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	217842167	217842185	217842184	-	High_confidence	5	5	18	1.004671	3.734522	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.888889
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	70180293	70180342	70180341	+	High_confidence	17	17	79	4.409388	5.112655	chr12	70180098	70180628	LTR|ERVL|MLT2B2	+	chr12	70180337	70202004	AC084032.1|ENST00000552324.1	+	70180337,70199732,70201714	70180538,70199819,70202004	0.518987
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	24151402	24151403	24151402	+	RAMPAGE_only	4	4	6	0.334890	2.584963	chrX	24151340	24151459	LINE|L2|L2b	-	chrX	24149789	24211700	ZFX|ENST00000304543.9	+	24149789,24151690,24152719,24172714,24179182,24207325,24207711,24208217,24208899,24210192	24149794,24151800,24152830,24172800,24179770,24207475,24207855,24208370,24209040,24211700	0.666667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	143018270	143018292	143018291	-	High_confidence	4	4	10	0.558150	2.721928	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	142982048	143018381	LY6E-DT|ENST00000522060.1	-	142982048,143009048,143018159	142982501,143009207,143018381	0.700000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	16712889	16712979	16712889	-	High_confidence	14	15	89	4.967538	5.597768	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.932584
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	36005313	36005320	36005319	+	High_confidence	5	5	10	0.558150	3.321928	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.800000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	29193456	29193460	29193459	+	High_confidence	12	13	23	1.283746	3.663533	chr21	29193019	29193674	LTR|ERV1|MER50B	+	chr21	29193493	29288205	LINC00189|NR_027072.2	+	29193493,29287983	29194260,29288205	0.913043
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	20208042	20208043	20208042	+	RAMPAGE_only	624	632	780	43.535726	7.111811	chr7	20207849	20208212	LTR|ERVL-MaLR|THE1D	+	chr7	20217576	20221700	LOC100506098|NR_134567.1	+	20217576,20217787,20218255,20219491,20221342	20217622,20217858,20218363,20219756,20221700	0.597436
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	30746653	30746656	30746655	+	RAMPAGE_only	6	10	12	0.669780	3.084963	chr13	30746681	30746787	DNA|hAT-Charlie|Charlie7	+	chr13	30735507	30764426	ALOX5AP|ENST00000380490.4	+	30735507,30744059,30752051,30755943,30763943	30735675,30744159,30752122,30756025,30764426	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	45825524	45825551	45825550	-	RAMPAGE_only	9	9	34	1.897711	4.058657	chr20	45825287	45825591	SINE|Alu|AluSx	-	chr20	45823213	45827314	TNNC2|NM_003279.2	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827314	0.970588
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	65382623	65382646	65382641	-	High_confidence	5	5	10	0.558150	2.641604	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382638	SLC25A45|ENST00000294187.10	-	65375193,65376817,65379375,65379866,65380131,65382485	65376675,65377076,65379561,65379938,65380175,65382638	0.600000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	53464803	53464824	53464815	+	RAMPAGE_only	2	2	8	0.446520	2.807355	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479821	MSTRG.9472.39	+	53462513,53465931,53467220,53467804,53471637,53479405	53462567,53465973,53467293,53468832,53471807,53479821	0.750000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	34244736	34244781	34244778	-	High_confidence	5	5	25	1.395376	4.053661	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34153881	34245180	MSTRG.33820.1	-	34153881,34175444,34175821,34179012,34182679,34218294,34239374,34244615	34169153,34175537,34175957,34179097,34182867,34218450,34239448,34245180	0.840000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	31121301	31121338	31121301	-	RAMPAGE_only	9	9	26	1.451191	3.840266	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.961538
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	31376356	31376357	31376356	-	High_confidence	105	106	106	5.916394	4.255226	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.877358
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	49086520	49086521	49086520	+	High_confidence	5	5	7	0.390705	2.521641	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.857143
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	80147915	80147921	80147920	+	High_confidence	5	6	9	0.502335	2.947703	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80147923	80178432	PARD6G-AS1|NR_028340.1	+	80147923,80175879,80178085	80148254,80175935,80178432	0.555556
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	103890325	103890336	103890335	-	RAMPAGE_only	3	3	7	0.390705	2.521641	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103892356	MSTRG.5749.8	-	103882554,103889071,103892296	103882841,103889144,103892356	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	32927967	32927977	32927976	+	RAMPAGE_only	23	25	56	3.125642	5.113089	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.839286
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	79607621	79607622	79607621	-	RAMPAGE_only	6	6	9	0.502335	3.169925	chr6	79607600	79607662	LTR|ERVL-MaLR|MSTA	-	chr6	79487827	79537458	LCA5|ENST00000467898.3	-	79487827,79491587,79492550,79493612,79513211,79518704,79537242	79489216,79491730,79492647,79493750,79513741,79519085,79537458	0.666667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	7566032	7566047	7566032	-	High_confidence	3	3	9	0.502335	2.725481	chr7	7565778	7566082	SINE|Alu|AluSc	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	80485618	80485655	80485618	+	High_confidence	3	4	9	0.502335	3.169925	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.888889
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	50443318	50443319	50443318	-	High_confidence	5	5	7	0.390705	2.807355	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.714286
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	76740500	76740509	76740508	+	RAMPAGE_only	5	5	14	0.781410	3.392747	chr17	76740464	76740701	SINE|MIR|MIR	+	chr17	76742190	76769840	MFSD11|ENST00000585584.5	+	76742190,76743397,76744321,76745392,76754046,76767385,76769745	76742273,76743456,76744466,76745439,76754087,76767451,76769840	0.642857
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	119420412	119420460	119420439	+	RAMPAGE_only	2	4	13	0.725595	3.584963	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.923077
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	16015432	16015433	16015432	+	RAMPAGE_only	12	12	14	0.781410	3.182006	chr12	16015241	16015617	LTR|ERVL-MaLR|THE1D	+	chr12	15956587	16037280	DERA|ENST00000526530.1	+	15956587,15956935,15958187,15959828,15962812,15982307,16032541,16036231,16036689	15956746,15957033,15958335,15959924,15962947,15982436,16032654,16036381,16037280	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	4355592	4355593	4355592	-	High_confidence	197	198	198	11.051377	4.322946	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.994949
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	31587009	31587021	31587009	+	High_confidence	9	11	31	1.730266	4.481728	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.935484
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	2726956	2726959	2726956	+	High_confidence	4	4	9	0.502335	2.750000	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.555556
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	66401878	66401899	66401878	+	RAMPAGE_only	6	6	13	0.725595	3.546594	chr15	66401474	66401958	LINE|L2|L2c	-	chr15	66386872	66491544	MAP2K1|NM_002755.3	+	66386872,66435026,66436745,66443279,66444655,66481754,66484989,66487227,66489214,66489717,66490501	66387427,66435237,66436892,66443357,66444707,66481879,66485191,66487292,66489276,66489763,66491544	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	23849096	23849106	23849105	-	RAMPAGE_only	3	3	7	0.390705	2.584963	chr1	23848965	23849282	SINE|Alu|AluSq2	-	chr1	23845076	23868294	FUCA1|ENST00000374479.3	-	23845076,23846073,23848648,23854359,23859797,23863133,23865490,23867897	23845855,23846173,23848839,23854560,23859903,23863271,23865625,23868294	0.857143
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	127084194	127084222	127084214	-	High_confidence	13	15	51	2.846567	5.037827	chr2	127084080	127084233	DNA|hAT-Charlie|MER5A1	+	chr2	127048022	127084550	BIN1|NM_001320642.1	-	127048022,127050420,127050801,127051153,127052254,127053421,127053904,127057472,127059010,127062114,127063570,127063932,127068162,127068923,127069994,127070552,127070761,127076625,127083588	127048633,127050522,127050912,127051243,127052362,127053445,127054012,127057601,127059155,127062197,127063646,127064018,127068255,127069031,127070090,127070647,127070816,127076706,127084550	0.960784
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	29280832	29280895	29280838	-	High_confidence	11	11	74	4.130312	5.536826	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.635135
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	38825356	38825361	38825360	+	RAMPAGE_only	5	5	10	0.558150	3.121928	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	80059915	80059919	80059918	+	High_confidence	64	74	127	7.088509	5.102628	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	26395603	26395612	26395611	+	High_confidence	5	7	10	0.558150	2.646439	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.800000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	37298760	37298761	37298760	+	RAMPAGE_only	7	7	7	0.390705	2.521641	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73837439	73837451	73837439	-	RAMPAGE_only	7	7	17	0.948856	3.327820	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.882353
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	39809843	39809865	39809843	-	High_confidence	7	7	36	2.009341	3.760250	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.888889
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	151539360	151539399	151539379	-	RAMPAGE_only	3	4	22	1.227931	3.784184	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.636364
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	49168514	49168519	49168515	+	High_confidence	8	14	20	1.116301	3.921928	chr8	49167941	49168559	LTR|ERVL|MER70B	-	chr8	49168681	49225029	AC022568.1|ENST00000519828.1	+	49168681,49193106,49224940	49168809,49193195,49225029	0.550000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	45825908	45825947	45825937	-	RAMPAGE_only	10	10	29	1.618636	3.869331	chr20	45825601	45825919	SINE|Alu|AluSp	-	chr20	45823213	45827314	TNNC2|NM_003279.2	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827314	0.931034
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	42959045	42959078	42959077	+	High_confidence	4	4	13	0.725595	3.022055	chr1	42959103	42959181	SINE|MIR|MIR3	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.846154
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	134485387	134485388	134485387	-	High_confidence	9	9	11	0.613965	3.027169	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	132073257	132073261	132073260	+	RAMPAGE_only	3	3	8	0.446520	2.521641	chr6	132073198	132073645	LTR|ERV1|MER4A1	-	chr6	131950945	132077393	AL133346.1|ENST00000435287.1	+	131950945,132077207	131951254,132077393	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	50131130	50131140	50131139	-	High_confidence	131	136	266	14.846799	6.443580	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.954887
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	2242922	2242923	2242922	+	High_confidence	10	10	10	0.558150	2.721928	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	39800293	39800314	39800304	-	High_confidence	10	10	40	2.232601	4.621928	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.575000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	45192697	45192710	45192707	-	RAMPAGE_only	7	9	18	1.004671	3.734522	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	140700445	140700452	140700445	+	High_confidence	813	913	1699	94.829742	4.893270	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.985874
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	29114199	29114219	29114199	+	High_confidence	2	2	8	0.446520	2.500000	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	30863413	30863434	30863433	+	RAMPAGE_only	3	3	9	0.502335	3.000000	chr13	30863143	30863642	LTR|ERVL|MER74A	+	chr13	30906174	30925572	MEDAG|NM_032849.3	+	30906174,30917402,30921013,30921560,30924310	30906793,30917512,30921126,30921846,30925572	0.555556
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	12522810	12522814	12522813	+	RAMPAGE_only	9	9	20	1.116301	3.384184	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.950000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	65564703	65564722	65564703	-	RAMPAGE_only	4	4	10	0.558150	2.641604	chr17	65564452	65564758	SINE|Alu|AluSp	+	chr17	65528562	65561647	AXIN2|ENST00000307078.9	-	65528562,65533911,65535625,65536319,65536868,65537323,65538202,65541454,65549519,65557805,65561449	65530102,65534079,65535721,65536553,65537063,65537835,65538343,65541557,65549660,65558736,65561647	0.900000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	59892716	59892746	59892716	-	High_confidence	5	5	22	1.227931	4.061482	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.909091
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	59619894	59619923	59619894	+	High_confidence	230	264	800	44.652027	6.434547	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.898750
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	35413016	35413021	35413016	+	RAMPAGE_only	3	3	7	0.390705	2.521641	chr10	35412983	35413034	LINE|L2|L2a	+	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	71050189	71050203	71050189	+	RAMPAGE_only	3	3	12	0.669780	2.625815	chr2	71048568	71050605	LTR|ERV1|HERVE-int	+	chr2	71055526	71056003	OR7E62P|ENST00000456741.1	+	71055526	71056003	0.666667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	18794063	18794086	18794085	+	High_confidence	14	14	49	2.734937	5.165730	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	130367263	130367296	130367281	+	RAMPAGE_only	2	2	9	0.502335	3.169925	chr7	130366972	130367289	LTR|ERVL-MaLR|MLT1J2	-	chr7	130363440	130368730	CPA5|ENST00000479492.1	+	130363440,130368409	130363509,130368730	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	35732358	35732359	35732358	-	High_confidence	38	38	44	2.455861	3.668422	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.954545
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	10844420	10844421	10844420	+	RAMPAGE_only	9	9	13	0.725595	3.418296	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10878266	10885118	LOC101929733|NR_110575.1	+	10878266,10884833	10878444,10885118	0.769231
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	46203082	46203083	46203082	-	High_confidence	20	20	21	1.172116	3.484184	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.619048
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	5848767	5848772	5848767	-	High_confidence	59	59	103	5.748948	5.103982	chr19	5847625	5849489	LTR|ERV1|HERVH-int	+	chr19	5844539	5848905	FUT3|ENST00000587048.1	-	5844539,5846425,5848833	5844851,5846618,5848905	0.747573
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	190261994	190262012	190262011	-	RAMPAGE_only	4	4	9	0.502335	2.750000	chr2	190261918	190262094	LTR|ERVL-MaLR|MLT1M	+	chr2	190205014	190250513	HIBCH|ENST00000410045.5	-	190205014,190208879,190212955,190244886,190246153,190249639,190250259	190205232,190208913,190213075,190244968,190246212,190249726,190250513	0.888889
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	128369561	128369606	128369605	+	RAMPAGE_only	36	39	124	6.921064	4.959283	chr3	128369587	128369654	SINE|MIR|MIRb	+	chr3	128153500	128408642	EEFSEC|ENST00000483457.1	+	128153500,128246835,128262127,128341232,128408068	128153823,128247043,128262224,128341889,128408642	0.943548
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100913310	100913438	100913310	+	RAMPAGE_only	10	11	79	4.409388	5.036683	chr14	100913266	100913386	LINE|L1|L1ME5	+	chr14	100907042	100947076	MSTRG.13609.70	+	100907042,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100931545,100935881,100937488,100938956,100940450,100942838,100944925,100947076	0.962025
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	74174554	74174572	74174558	+	High_confidence	98	105	360	20.093412	5.332477	chr15	74174565	74174721	SINE|MIR|MIR3	+	chr15	74174563	74176871	ISLR|NM_201526.1	+	74174563,74174850	74174653,74176871	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	101217580	101217599	101217598	-	High_confidence	4	4	14	0.781410	3.392747	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.928571
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	53523885	53523891	53523885	-	High_confidence	3	4	11	0.613965	2.921928	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.818182
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	153967486	153967517	153967497	+	High_confidence	8	10	34	1.897711	4.354852	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	233691673	233691710	233691709	+	RAMPAGE_only	16	16	37	2.065156	4.810673	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233692865	233773305	UGT1A6|NM_001072.3	+	233692865,233767033,233767848,233768219,233772261	233693865,233767165,233767936,233768439,233773305	0.594595
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	33194701	33194726	33194701	-	High_confidence	3	3	11	0.613965	2.921928	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.818182
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	67166512	67166531	67166530	+	High_confidence	6	6	17	0.948856	2.905639	chr15	67166449	67166543	LINE|L2|L2b	-	chr15	67166530	67181420	SMAD3|ENST00000558428.5	+	67166530,67170553,67181240	67166853,67170604,67181420	0.941176
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	2990748	2990755	2990748	-	RAMPAGE_only	13	13	23	1.283746	2.754442	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.913043
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	78293478	78293501	78293500	+	RAMPAGE_only	8	11	21	1.172116	3.916127	chr1	78293369	78293720	LTR|ERVL-MaLR|THE1A	+	chr1	78303883	78539749	PTGFR|ENST00000370758.5	+	78303883,78398950,78492671,78536405	78303931,78399025,78493541,78539749	0.571429
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	80517075	80517092	80517091	+	RAMPAGE_only	4	4	9	0.502335	2.750000	chr5	80516845	80517384	DNA|TcMar-Tigger|MER44B	+	chr5	80487985	80542042	FAM151B|ENST00000511718.5	+	80487985,80495052,80499884,80501791,80505942,80510713,80513603,80518763,80519692,80522002,80541672	80488148,80495283,80499985,80501917,80506076,80511086,80513769,80518930,80519910,80522138,80542042	0.555556
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	24580612	24580623	24580612	+	High_confidence	3	3	7	0.390705	2.521641	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	40772059	40772060	40772059	+	RAMPAGE_only	35	35	35	1.953526	3.257118	chr19	40771932	40772225	SINE|Alu|AluJo	-	chr19	40775176	40777493	MIA|NM_001202553.1	+	40775176,40775536,40775751,40776968,40777396	40775211,40775669,40775885,40777079,40777493	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	151958581	151958582	151958581	-	RAMPAGE_only	8	8	8	0.446520	2.750000	chrX	151958580	151958655	DNA|DNA|MER135	-	chrX	151953124	151959723	GABRE|ENST00000486255.1	-	151953124,151955367,151955707	151955084,151955567,151959723	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	127329745	127329746	127329745	-	RAMPAGE_only	11	11	11	0.613965	3.277613	chr3	127329590	127333426	LINE|L1|L1MA8	+	chr3	127322306	127390670	LOC101927123|NR_110147.1	-	127322306,127324534,127355889,127356250,127390445	127322727,127324731,127355940,127356283,127390670	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	191245143	191245200	191245143	+	High_confidence	3	3	17	0.948856	3.750000	chr2	191245108	191245343	LINE|L1|L1M4b	+	chr2	191245184	191346274	MYO1B|ENST00000418908.5	+	191245184,191276886,191296110,191329934,191341460,191346235	191245257,191277030,191296226,191330029,191341565,191346274	0.647059
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	47779747	47779772	47779747	+	High_confidence	2	2	10	0.558150	3.321928	chr19	47779522	47779824	SINE|Alu|AluJo	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	63592261	63592274	63592261	+	RAMPAGE_only	2	2	7	0.390705	2.521641	chr17	63592124	63592427	SINE|Alu|AluY	+	chr17	63550460	63594266	DCAF7|ENST00000614556.4	+	63550460,63578469,63579336,63579824,63583501,63585210,63588999	63550815,63578628,63579448,63579943,63583711,63585328,63594266	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	88887267	88887342	88887267	-	RAMPAGE_only	4	4	16	0.893041	3.750000	chr1	88886926	88887218	SINE|Alu|AluSx1	-	chr1	88853223	88891496	GTF2B|ENST00000448623.5	-	88853223,88857372,88859881,88860139,88863980,88887260,88891482	88853346,88857487,88860011,88860286,88864114,88887367,88891496	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	75127183	75127264	75127224	-	High_confidence	18	18	81	4.521018	4.805583	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75127237	MSTRG.32189.1	-	75081701,75084588,75127065	75082357,75084703,75127237	0.950617
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	71480100	71480115	71480100	+	High_confidence	8	8	16	0.893041	3.155639	chr11	71479919	71480150	LINE|L1|L1MB7	-	chr11	71480148	71490876	NADSYN1|ENST00000526039.6	+	71480148,71480754,71481355,71482000,71482848,71484311,71485541,71490844	71480274,71480879,71481404,71482025,71483017,71484447,71485648,71490876	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	71024055	71024083	71024055	+	High_confidence	4	4	10	0.558150	2.947703	chr2	71020399	71024471	LTR|ERV1|HERVE-int	+	chr2	71024074	71029931	OR7E91P|NR_002185.3	+	71024074,71024305,71028915	71024200,71024394,71029931	0.900000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	77980141	77980142	77980141	+	RAMPAGE_only	99	99	107	5.972209	4.321142	chr12	77979813	77980297	LTR|ERV1|LOR1a	-	chr12	77966275	78006766	NAV3|ENST00000550503.1	+	77966275,77968518,77998336,78006418	77966301,77968702,77998476,78006766	0.925234
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	80369531	80369569	80369531	+	High_confidence	8	8	27	1.507006	4.532665	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.740741
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	143852541	143852591	143852590	-	RAMPAGE_only	8	9	32	1.786081	4.562500	chr7	143852406	143853075	LINE|L1|L1M6B	-	chr7	143851367	143885373	TCAF1|NM_001206941.1	-	143851367,143857099,143858823,143860207,143861094,143862415,143862801,143885209	143854142,143857350,143859161,143860447,143861308,143862513,143863796,143885373	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	128921399	128921411	128921399	+	High_confidence	21	21	46	2.567492	4.716618	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.934783
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	38121472	38121492	38121491	+	High_confidence	43	43	94	5.246613	5.252423	chr21	38121186	38121599	LTR|ERV1|LTR9	-	chr21	38121472	38156511	DSCR8|ENST00000465532.5	+	38121472,38122311,38154432,38156303	38121601,38122668,38154529,38156511	0.989362
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100914805	100914865	100914864	+	RAMPAGE_only	3	3	15	0.837226	3.323231	chr14	100914604	100915346	LTR|ERVL|MER54A	+	chr14	100907042	100947076	MSTRG.13609.70	+	100907042,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100931545,100935881,100937488,100938956,100940450,100942838,100944925,100947076	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	45292684	45292709	45292685	+	High_confidence	32	45	133	7.423399	5.809052	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.984962
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	113918675	113918744	113918713	-	High_confidence	2	3	16	0.893041	3.456565	chr7	113918643	113918708	DNA|hAT-Ac|OldhAT1	-	chr7	113872409	113918996	MSTRG.40468.1	-	113872409,113879488,113882038,113882261,113918214	113879390,113880125,113882163,113882320,113918996	0.937500
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	178679617	178679677	178679676	-	RAMPAGE_only	4	8	29	1.618636	4.356558	chr2	178679617	178679655	LINE|CR1|L3	-	chr2	178636751	178702520	TTN|ENST00000414766.5	-	178636751,178639698,178640047,178640540,178641240,178642236,178673632,178674313,178678124,178678413,178678746,178681660,178682696,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453	178636799,178639788,178640110,178640630,178641315,178642317,178673710,178674409,178678208,178678497,178678830,178681738,178682903,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702520	0.620690
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	50756896	50756943	50756942	-	RAMPAGE_only	4	4	14	0.781410	3.238901	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.928571
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100834619	100834682	100834661	+	High_confidence	7	7	26	1.451191	3.943465	chr14	100834648	100834738	LINE|L2|L2b	+	chr14	100833763	100861021	MEG3|ENST00000524035.5	+	100833763,100836166,100845457,100860690	100836075,100836300,100845533,100861021	0.961538
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	126207586	126207609	126207608	-	RAMPAGE_only	6	9	22	1.227931	3.921928	chr11	126207561	126207848	SINE|Alu|AluSz	+	chr11	126203321	126206512	RPUSD4|ENST00000530903.1	-	126203321,126204230,126205467,126205687	126203657,126204328,126205612,126206512	0.909091
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	1655380	1655411	1655410	-	RAMPAGE_only	5	9	20	1.116301	3.921928	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	39026112	39026136	39026135	+	High_confidence	7	7	24	1.339561	3.606937	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	0.916667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	102822458	102822465	102822458	-	RAMPAGE_only	3	3	9	0.502335	2.750000	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.888889
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100831422	100831436	100831435	+	High_confidence	3	3	12	0.669780	2.663533	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100831450	100860770	MEG3|ENST00000649161.1	+	100831450,100834631,100836166,100845457,100857647,100860690	100831534,100834751,100836300,100845533,100857797,100860770	0.583333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	85379925	85379947	85379946	-	RAMPAGE_only	5	5	11	0.613965	3.321928	chr1	85379701	85380025	LINE|L2|L2	+	chr1	85321451	85404528	DDAH1|ENST00000633113.1	-	85321451,85324739,85350414,85351505,85358747,85404380	85321568,85324883,85350534,85351579,85358847,85404528	0.636364
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	70394883	70394884	70394883	+	High_confidence	28	28	29	1.618636	4.378783	chr6	70394625	70395013	LTR|ERV1|MER48	+	chr6	70394886	70399417	AL365226.2|ENST00000418403.1	+	70394886,70395229,70399214	70395043,70395266,70399417	0.931034
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	120381567	120381631	120381630	+	RAMPAGE_only	9	11	51	2.846567	4.915431	chrX	120381437	120381749	SINE|Alu|AluSz	-	chrX	120362111	120382371	ATP1B4|ENST00000218008.7	+	120362111,120366524,120370714,120371105,120375371,120376379,120378677,120379472	120362231,120366789,120370843,120371210,120375568,120376436,120378773,120382371	0.941176
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	201427175	201427176	201427175	-	RAMPAGE_only	39	39	39	2.176786	4.611949	chr1	201427119	201427295	SINE|MIR|MIR	-	chr1	201408863	201429866	TNNI1|ENST00000336092.8	-	201408863,201410325,201411356,201413031,201414517,201415212,201417115,201417782,201421672,201427174,201428837,201429698	201409250,201410435,201411533,201413121,201414649,201415254,201417119,201417812,201421726,201427293,201429274,201429866	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100903672	100903705	100903704	-	High_confidence	16	17	51	2.846567	4.905378	chr14	100903521	100903697	SINE|MIR|MIRb	-	chr14	100879752	100903722	RTL1|ENST00000649591.1	-	100879752,100893443,100903290,100903604	100884874,100893505,100903386,100903722	0.882353
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	113583448	113583509	113583448	+	High_confidence	13	13	34	1.897711	3.664977	chr2	113583263	113583560	LINE|L1|L1MB3	-	chr2	113583652	113599037	WASH2P|NR_024077.2	+	113583652,113588549,113595062,113595368,113595692,113596067,113596380,113596670,113597485,113598397,113598606	113583928,113588703,113595161,113595515,113595829,113596203,113596578,113596829,113597638,113598466,113599037	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	36584210	36584221	36584210	-	High_confidence	2	2	7	0.390705	2.521641	chr2	36584029	36584427	LTR|ERVL|LTR33	+	chr2	36555682	36584058	FEZ2|ENST00000464964.1	-	36555682,36558437,36578596,36581289,36583352,36584029	36555748,36558513,36578865,36581431,36583469,36584058	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	45522855	45522859	45522858	-	High_confidence	20	20	34	1.897711	4.616875	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	35412546	35412569	35412546	+	RAMPAGE_only	6	6	12	0.669780	3.095795	chr10	35412569	35412888	SINE|Alu|AluSx	+	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.916667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	70701807	70701828	70701827	-	RAMPAGE_only	5	5	14	0.781410	2.807355	chr16	70701088	70701988	LINE|L2|L2a	+	chr16	70687441	70700245	VAC14|ENST00000536184.6	-	70687441,70692820,70695543,70697138,70698636,70699258	70688090,70692971,70695623,70697257,70698811,70700245	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	85330237	85330287	85330237	-	RAMPAGE_only	8	8	28	1.562821	4.328600	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.607143
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	171251831	171251850	171251831	-	High_confidence	2	2	8	0.446520	3.000000	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171247579	171251794	AL445673.1|ENST00000455124.2	-	171247579,171251522	171247723,171251794	0.625000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	68679930	68679962	68679961	+	High_confidence	4	4	8	0.446520	3.000000	chr2	68677861	68680074	LINE|L1|L1PA3	-	chr2	68679961	68782286	ARHGAP25|ENST00000491237.5	+	68679961,68710504,68775220,68782232	68680095,68710698,68775420,68782286	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	39556478	39556479	39556478	+	RAMPAGE_only	25	27	30	1.674451	4.351823	chr12	39556281	39556660	LTR|ERVL-MaLR|THE1D	+	chr12	39626166	39692187	C12orf40|NM_001319247.1	+	39626166,39640954,39643778,39646328,39646839,39647791,39650238,39682610,39683414,39684866,39692048	39626359,39640994,39643917,39646461,39646888,39647977,39650354,39683140,39683484,39684927,39692187	0.733333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	60949435	60949444	60949443	-	RAMPAGE_only	26	45	70	3.907052	4.644339	chr1	60949259	60949438	SINE|MIR|MIRb	-	chr1	60940238	60970776	NFIA-AS2|ENST00000438559.5	-	60940238,60941179,60952510,60954321,60954484,60963565,60970547	60940631,60941252,60952684,60954370,60954602,60963804,60970776	0.857143
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	120381238	120381495	120381370	+	RAMPAGE_only	10	16	128	7.144324	5.828676	chrX	120381172	120381437	LINE|L2|L2c	-	chrX	120362111	120382371	ATP1B4|ENST00000218008.7	+	120362111,120366524,120370714,120371105,120375371,120376379,120378677,120379472	120362231,120366789,120370843,120371210,120375568,120376436,120378773,120382371	0.984375
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	116838442	116838467	116838466	+	High_confidence	5	5	11	0.613965	3.095795	chr9	116838426	116838730	SINE|Alu|AluSq2	-	chr9	116838143	116877264	AL157829.1|ENST00000648160.1	+	116838143,116841428,116842381,116870198,116876607	116839290,116841517,116842517,116870244,116877264	0.909091
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	36584049	36584050	36584049	-	High_confidence	8	8	11	0.613965	2.732159	chr2	36584029	36584427	LTR|ERVL|LTR33	+	chr2	36555682	36584058	FEZ2|ENST00000464964.1	-	36555682,36558437,36578596,36581289,36583352,36584029	36555748,36558513,36578865,36581431,36583469,36584058	0.818182
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	32446967	32446978	32446977	+	High_confidence	8	8	16	0.893041	3.280639	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	34754775	34754799	34754798	+	High_confidence	4	4	8	0.446520	2.807355	chr1	34754671	34754841	SINE|MIR|MIR	-	chr1	34755046	34758512	GJB5|NM_005268.3	+	34755046,34757306	34755195,34758512	0.750000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	218287266	218287280	218287279	-	High_confidence	91	92	228	12.725828	6.214113	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.719298
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	172453103	172453132	172453103	+	High_confidence	13	14	54	3.014012	4.829625	chr1	172453135	172453205	LINE|RTE-BovB|MamRTE1	+	chr1	172452892	172468829	C1orf105|NM_001300760.1	+	172452892,172456414,172462177,172465298,172468448	172453189,172456489,172462245,172465363,172468829	0.981481
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	149719343	149719351	149719350	+	High_confidence	9	10	18	1.004671	3.734522	chr7	149718995	149719389	LTR|ERVL-MaLR|MLT1C	-	chr7	149719638	149734571	KRBA1|ENST00000485033.6	+	149719638,149720007,149720834,149721379,149722421,149722782,149723733,149724651,149725314,149725886,149728522,149730146,149730427,149731671,149733205	149719672,149720127,149720990,149721535,149722553,149722956,149723889,149724849,149725488,149726060,149728675,149730341,149730568,149731776,149734571	0.722222
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	35449700	35449725	35449709	+	RAMPAGE_only	3	3	10	0.558150	2.846439	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.900000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	64242603	64242620	64242619	+	High_confidence	5	5	13	0.725595	2.653544	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	102431237	102431250	102431247	-	High_confidence	10	11	23	1.283746	3.253158	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	42403958	42404114	42403958	-	RAMPAGE_only	6	6	65	3.627977	5.359070	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402451	42423259	MSTRG.18454.1	-	42402451,42404534,42422626	42404372,42405388,42423259	0.984615
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	154928492	154928504	154928503	+	High_confidence	14	14	25	1.395376	4.175736	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.880000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	178725386	178725551	178725386	-	RAMPAGE_only	18	18	213	11.888602	6.599803	chr2	178725187	178725337	LINE|CR1|L3b	-	chr2	178527011	178804642	TTN|ENST00000615779.5	-	178527011,178527445,178528273,178528527,178529959,178530240,178535981,178536937,178537341,178538539,178538945,178539381,178540067,178541281,178542263,178542661,178543068,178543833,178544200,178545387,178545819,178546211,178546599,178547002,178547406,178549569,178549985,178550966,178551629,178553501,178553913,178554452,178554864,178556847,178557252,178557647,178558340,178559310,178576528,178576922,178577601,178577987,178578610,178578805,178579560,178579938,178580321,178581498,178581905,178582295,178582939,178583606,178584275,178584668,178585071,178586504,178587117,178587515,178587898,178588537,178591598,178591977,178592378,178592774,178593172,178593567,178593960,178594343,178595506,178597537,178597907,178598505,178598747,178599145,178599553,178600853,178601264,178601657,178601881,178602001,178602281,178603875,178604707,178604986,178605413,178607020,178607400,178607784,178608177,178608605,178609207,178609683,178610089,178610992,178611371,178611757,178612056,178612276,178612772,178613160,178613750,178614051,178614465,178614846,178615306,178615640,178616478,178616728,178617119,178617324,178617778,178618188,178618583,178619620,178619987,178620216,178620714,178621101,178621474,178621839,178622669,178624464,178625272,178629300,178630240,178630803,178631033,178632146,178632525,178632917,178633186,178633412,178633816,178634365,178634722,178635164,178635439,178635962,178636397,178637368,178639698,178640047,178640540,178641240,178642236,178644547,178645919,178649816,178650163,178650750,178651242,178651452,178651665,178651883,178652095,178652263,178652457,178659004,178659171,178662965,178670217,178671089,178671970,178672406,178672634,178673632,178674313,178675038,178675920,178677620,178678124,178678413,178678746,178679338,178679598,178679893,178680253,178681078,178681375,178681660,178682696,178683210,178683998,178684329,178684665,178684905,178685252,178685517,178688110,178688676,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453,178704146,178704509,178704876,178705173,178706453,178706861,178707525,178709565,178710634,178711061,178711943,178712314,178712696,178713084,178713896,178714291,178714985,178715492,178717094,178717522,178717942,178718321,178718694,178719163,178719553,178719982,178720384,178720920,178721846,178722258,178722658,178723045,178723417,178723855,178724259,178725367,178725767,178727089,178727584,178728109,178728499,178728890,178729287,178729663,178730092,178730504,178730924,178731304,178731692,178732065,178732439,178732833,178733238,178733613,178734327,178734706,178735510,178738081,178739140,178753123,178758983,178764176,178764526,178766380,178767758,178768013,178768672,178769678,178770059,178770411,178771210,178773108,178773461,178773837,178774206,178774920,178775355,178777148,178777419,178777703,178778873,178779228,178779999,178781120,178782211,178782538,178782805,178783719,178784069,178785619,178785847,178789359,178789977,178790707,178792071,178793403,178794398,178794921,178799486,178799824,178800394,178802137,178804551	178527307,178527748,178528427,178529219,178530116,178535849,178536575,178537243,178537917,178538839,178539251,178539966,178540370,178541584,178542563,178542949,178543662,178544115,178544506,178545693,178546116,178546502,178546905,178547305,178549473,178549869,178550273,178551260,178553396,178553807,178554216,178554752,178555152,178557144,178557555,178558235,178558637,178576416,178576831,178577510,178577898,178578185,178578715,178579393,178579848,178580229,178580609,178581804,178582208,178582592,178583227,178583906,178584578,178584968,178585347,178586807,178587417,178587800,178588219,178591504,178591892,178592277,178592660,178593083,178593475,178593867,178594242,178594646,178595809,178597819,178598058,178598654,178599062,178599445,178599850,178601171,178601564,178601787,178601914,178602150,178602590,178604305,178604898,178605295,178605713,178607314,178607685,178608081,178608477,178608908,178609570,178609986,178610389,178611271,178611677,178611954,178612162,178612576,178613072,178613276,178613937,178614348,178614753,178614968,178615484,178615788,178616630,178617013,178617234,178617512,178618081,178618491,178618853,178619887,178620112,178620625,178620993,178621368,178621741,178622008,178622767,178624731,178625396,178629443,178630367,178630943,178631300,178632413,178632792,178633044,178633326,178633676,178634083,178634629,178634849,178635304,178635715,178636241,178636799,178637419,178639788,178640110,178640630,178641315,178642317,178644616,178646030,178649894,178650271,178650834,178651320,178651536,178651749,178651967,178652179,178652347,178652541,178659088,178659255,178663055,178670295,178671170,178672267,178672481,178672703,178673710,178674409,178675113,178675995,178677917,178678208,178678497,178678830,178679416,178679682,178680055,178680331,178681171,178681450,178681738,178682903,178683291,178684082,178684413,178684749,178684989,178685330,178685598,178688224,178688778,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702663,178704407,178704777,178704966,178705357,178706739,178706954,178707813,178709856,178710922,178711349,178712222,178712593,178712975,178713372,178714175,178714573,178715264,178715774,178717382,178717810,178718221,178718600,178718973,178719451,178719832,178720264,178720663,178721202,178722134,178722546,178722937,178723324,178723696,178724143,178724538,178725649,178726046,178727371,178727863,178728397,178728778,178729169,178729566,178729945,178730371,178730792,178731203,178731583,178731971,178732347,178732718,178733121,178733517,178733892,178734606,178734988,178736074,178738360,178741921,178753180,178759172,178764302,178764811,178766612,178767924,178768155,178768933,178769939,178770320,178770675,178771471,178773369,178773725,178774110,178774473,178775202,178777049,178777317,178777584,178777975,178779118,178779462,178780205,178781263,178782427,178782602,178783064,178783785,178784351,178785742,178786141,178789497,178790115,178790845,178792197,178793541,178794551,178795252,178799731,178799910,178800682,178802341,178804642	0.967136
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	159428345	159428357	159428356	-	RAMPAGE_only	10	10	19	1.060486	3.947703	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159386373	159400650	BAZ2B|ENST00000294905.4	-	159386373,159389344,159395768,159397073,159397344,159398828,159400598	159386607,159389485,159395834,159397100,159397389,159398894,159400650	0.526316
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	3795763	3795792	3795763	+	High_confidence	8	8	58	3.237272	4.991349	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	32403145	32403177	32403148	-	RAMPAGE_only	11	13	25	1.395376	3.973661	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	182928788	182928818	182928788	-	RAMPAGE_only	4	4	11	0.613965	3.121928	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.545455
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	51027559	51027668	51027667	-	High_confidence	23	23	131	7.311769	6.016260	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.793893
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	116648883	116648893	116648883	-	RAMPAGE_only	3	3	8	0.446520	2.807355	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.875000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	3536476	3536516	3536496	-	High_confidence	10	10	26	1.451191	4.286790	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.807692
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	20921027	20921045	20921027	+	High_confidence	4	4	9	0.502335	3.000000	chr17	20920944	20921033	LINE|L2|L2a	+	chr17	20921044	20930046	CCDC144NL-AS1|ENST00000443508.6	+	20921044,20924358,20929430	20921169,20924833,20930046	0.888889
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	149371589	149371630	149371589	+	High_confidence	4	4	20	1.116301	3.641446	chr5	149371562	149371710	LINE|L2|L2b	-	chr5	149372173	149375116	AC131025.1|ENST00000521756.1	+	149372173,149374708	149372353,149375116	0.950000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	47610553	47610588	47610553	-	High_confidence	14	15	28	1.562821	3.824863	chr3	47610404	47610841	LINE|CR1|L3	-	chr3	47590805	47610798	SMARCC1|ENST00000492896.1	-	47590805,47610065,47610524	47590837,47610327,47610798	0.535714
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	71745875	71745899	71745875	+	High_confidence	15	17	49	2.734937	4.695944	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.959184
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	15006394	15006395	15006394	+	RAMPAGE_only	9	9	11	0.613965	2.550341	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	14997747	15038323	PDXDC1|ENST00000450288.3	+	14997747,14998339,15006393,15008778,15009680,15016128,15017119,15017320,15018839,15022703,15026642,15028877,15029950,15031734,15032860,15033277,15034285,15034456,15035448,15036015	14997826,14998405,15006583,15008847,15009759,15016213,15017168,15017422,15018965,15022754,15026706,15028966,15030056,15031906,15032979,15033399,15034378,15034553,15035553,15038323	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	78620056	78620058	78620056	+	High_confidence	9	18	18	1.004671	3.836592	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.833333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	65570512	65570522	65570521	+	High_confidence	16	30	71	3.962867	5.752832	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.619718
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	197458401	197458402	197458401	+	High_confidence	8	9	9	0.502335	3.000000	chr3	197458272	197458415	DNA|hAT-Tip100|MER91A	+	chr3	197458404	197467105	AC128709.3|ENST00000420213.1	+	197458404,197466617	197458542,197467105	0.555556
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	34546843	34546859	34546858	+	RAMPAGE_only	6	7	15	0.837226	3.182006	chr20	34546707	34546884	LTR|ERVL-MaLR|MLT1J	-	chr20	34558107	34560345	MAP1LC3A|ENST00000360668.7	+	34558107,34559207,34559346,34559735	34558908,34559263,34559453,34560345	0.866667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	4221920	4221921	4221920	-	RAMPAGE_only	5	5	8	0.446520	2.750000	chr16	4221649	4222087	LTR|ERVL-MaLR|MLT1C	-	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.875000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	45450729	45450747	45450734	-	High_confidence	7	7	28	1.562821	4.532665	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.892857
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	113117956	113117972	113117970	+	High_confidence	1172	1451	2418	134.960751	7.395766	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117980	113133121	MSTRG.24025.7	+	113117980,113127688,113129575,113132655	113118028,113127740,113131157,113133121	0.687758
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	28090267	28090340	28090290	+	High_confidence	9	9	54	3.014012	4.130677	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	0.925926
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	92536601	92536602	92536601	-	High_confidence	22	24	24	1.339561	3.697846	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.833333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	2205804	2205860	2205804	+	High_confidence	4	4	27	1.507006	3.708048	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	29114170	29114174	29114170	+	High_confidence	3	3	9	0.502335	3.169925	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.777778
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	4341368	4341399	4341380	-	RAMPAGE_only	16	16	41	2.288416	4.734184	chr17	4341334	4342347	LINE|L2|L2a	+	chr17	4269258	4366482	UBE2G1|ENST00000396981.6	-	4269258,4282797,4289229,4296716,4307020,4366270	4272516,4282921,4289408,4296814,4307123,4366482	0.829268
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	123061141	123061278	123061256	-	High_confidence	13	16	125	6.976879	5.658918	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.984000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	111097295	111097352	111097337	-	High_confidence	7	8	34	1.897711	4.205110	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.970588
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	44953990	44954037	44953990	+	High_confidence	13	13	96	5.358243	5.479348	chr21	44953871	44954037	LINE|L1|L1M5	-	chr21	44953970	44976973	MSTRG.27400.4	+	44953970,44960099,44967033,44973196,44976679	44954121,44960168,44967181,44973265,44976973	0.968750
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	109726342	109726355	109726342	+	High_confidence	2	2	8	0.446520	2.521641	chr9	109726109	109726612	LTR|ERVL-MaLR|MLT1N2	+	chr9	109726314	110172512	MSTRG.44405.3	+	109726314,109780487,109867490,109880550,109923734,109925060,109931926,110015953,110136126,110156318,110162093,110168398	109726519,109780533,109867571,109880681,109923849,109925082,109932028,110016039,110138539,110156497,110162132,110172512	0.625000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	143281669	143281687	143281669	-	High_confidence	25	25	61	3.404717	4.986786	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281250	MINCR|ENST00000519852.5	-	143280827,143281092	143280997,143281250	0.524590
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	137254876	137254941	137254940	-	RAMPAGE_only	13	13	75	4.186128	4.824042	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	151539265	151539316	151539291	-	RAMPAGE_only	6	6	27	1.507006	4.315824	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.666667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	121313963	121314021	121314020	+	RAMPAGE_only	7	7	47	2.623307	4.697894	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	107719823	107719824	107719823	-	High_confidence	9	10	12	0.669780	3.095795	chr11	107719646	107719884	LTR|Gypsy?|LTR88c	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.916667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	2757780	2757811	2757810	+	High_confidence	2	2	9	0.502335	2.750000	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.777778
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	172213128	172213188	172213132	-	High_confidence	4	5	20	1.116301	4.321928	chr1	172212898	172213110	SINE|MIR|MIR3	-	chr1	172140051	172213133	MSTRG.3034.5	-	172140051,172142135,172144364,172212880	172140596,172142213,172144437,172213133	0.600000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	16878663	16878710	16878663	-	RAMPAGE_only	6	6	18	1.004671	3.350209	chr11	16878610	16878767	SINE|Alu|AluSx	-	chr11	16851197	16881358	PLEKHA7|ENST00000528376.5	-	16851197,16852282,16854888,16855802,16871098,16881283	16851291,16852355,16854993,16855914,16871182,16881358	0.555556
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	9140390	9140428	9140427	+	High_confidence	19	19	56	3.125642	5.208410	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.767857
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	130367163	130367194	130367163	-	High_confidence	5	8	22	1.227931	3.788755	chr7	130366972	130367289	LTR|ERVL-MaLR|MLT1J2	-	chr7	130365649	130367127	LOC105375504|NR_133928.1	-	130365649,130366829	130365869,130367127	0.772727
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	114759263	114759301	114759276	-	High_confidence	6	6	18	1.004671	3.836592	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.611111
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	9849550	9849624	9849623	+	RAMPAGE_only	6	6	34	1.897711	3.086313	chr18	9849471	9850083	LINE|L2|L2a	-	chr18	9856043	9859520	RAB31|ENST00000577284.1	+	9856043,9859227	9856354,9859520	0.794118
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	18149868	18149883	18149882	+	High_confidence	5	5	16	0.893041	3.077820	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	46243250	46243268	46243267	-	RAMPAGE_only	4	4	9	0.502335	2.750000	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.555556
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100914926	100914967	100914941	+	RAMPAGE_only	3	3	10	0.558150	2.921928	chr14	100914604	100915346	LTR|ERVL|MER54A	+	chr14	100907042	100947076	MSTRG.13609.70	+	100907042,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100931545,100935881,100937488,100938956,100940450,100942838,100944925,100947076	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	5680196	5680249	5680248	-	High_confidence	17	24	97	5.414058	5.355716	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.989691
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	159920334	159920384	159920334	-	RAMPAGE_only	8	8	21	1.172116	4.011365	chr1	159920065	159920288	LINE|CR1|L3b	-	chr1	159918106	159923717	TAGLN2|NM_001277224.1	-	159918106,159919273,159919660,159920329,159923435	159918941,159919376,159919835,159920537,159923717	0.952381
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	93017667	93017734	93017733	-	High_confidence	7	8	36	2.009341	4.743289	chr8	93017253	93017736	LTR|ERVL|LTR79	-	chr8	92885319	93017673	TRIQK|ENST00000520686.5	-	92885319,92891988,92916928,92954405,93017608	92886735,92892074,92917010,92954564,93017673	0.555556
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	2589118	2589121	2589120	+	RAMPAGE_only	4	7	9	0.502335	3.000000	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	0.888889
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	172958855	172958919	172958918	+	High_confidence	11	13	53	2.958197	3.936681	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.962264
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	110885091	110885092	110885091	+	High_confidence	14	16	16	0.893041	3.327820	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110885252	110898122	PDCD4|ENST00000462577.5	+	110885252,110887664,110890599,110894090,110894411,110895947,110898027	110885366,110887814,110890670,110894198,110894522,110896087,110898122	0.750000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	112219334	112219335	112219334	+	RAMPAGE_only	38	38	41	2.288416	4.409130	chr5	112219140	112219503	LTR|ERVL-MaLR|THE1D	+	chr5	112228282	112257309	AC104126.1|ENST00000504004.1	+	112228282,112249597,112250614,112256862	112228352,112249632,112250773,112257309	0.926829
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	34233920	34233921	34233920	+	RAMPAGE_only	104	105	146	8.148995	6.163642	chr9	34233518	34234003	LINE|L2|L2a	-	chr9	34220438	34252522	UBAP1|ENST00000359544.2	+	34220438,34220907,34234215,34241184,34249778,34250657,34251391	34220467,34220948,34234340,34242108,34249961,34250759,34252522	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	82935294	82935337	82935294	-	RAMPAGE_only	3	3	12	0.669780	3.459432	chr15	82934248	82936442	LINE|L2|L2a	+	chr15	82848982	82952721	HOMER2|ENST00000450735.6	-	82848982,82851150,82852141,82854643,82859028,82864166,82875272,82892684,82952530	82849903,82851231,82852252,82854800,82859135,82864259,82875404,82892841,82952721	0.833333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	28234030	28234043	28234030	-	RAMPAGE_only	3	4	9	0.502335	2.500000	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.888889
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	48868595	48868631	48868595	-	High_confidence	462	480	1513	84.448146	7.582458	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.991408
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	127531649	127531693	127531680	-	RAMPAGE_only	4	4	11	0.613965	2.921928	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.727273
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	174874385	174874434	174874418	+	High_confidence	37	38	97	5.414058	5.803509	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.608247
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	6737490	6737574	6737545	+	High_confidence	11	12	61	3.404717	4.707308	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	2881285	2881286	2881285	-	High_confidence	17	17	17	0.948856	3.734522	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	65244454	65244455	65244454	-	RAMPAGE_only	6	6	8	0.446520	2.500000	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	83096150	83096174	83096152	+	RAMPAGE_only	12	21	36	2.009341	4.426734	chr5	83096041	83096667	LINE|L1|L1M3a	-	chr5	83104907	83259339	XRCC4|ENST00000509268.1	+	83104907,83111027,83195769,83203551,83204814,83258529	83105058,83111203,83195936,83203707,83204921,83259339	0.972222
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	4187100	4187109	4187108	-	High_confidence	7	7	12	0.669780	3.277613	chr17	4187012	4187196	LINE|L1|L1PB2	-	chr17	4183525	4187109	ANKFY1|ENST00000574736.1	-	4183525,4183811,4184817,4186893	4183551,4183910,4185046,4187109	0.833333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	44914313	44914322	44914321	+	High_confidence	7	7	12	0.669780	2.617492	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	177314885	177314917	177314885	-	RAMPAGE_only	4	4	17	0.948856	3.500000	chr2	177314867	177315028	DNA|hAT-Charlie|MER5A1	+	chr2	177283513	177323164	AC019080.1|ENST00000430416.5	-	177283513,177287484,177310963,177311232,177323084	177283804,177287834,177311035,177311328,177323164	0.882353
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	209429061	209429086	209429061	+	High_confidence	50	50	87	4.855908	5.135007	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429082	209430621	MIR205HG|ENST00000444286.1	+	209429082,209430424	209429408,209430621	0.770115
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	103890260	103890286	103890285	-	RAMPAGE_only	6	6	12	0.669780	3.277613	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103892356	MSTRG.5749.8	-	103882554,103889071,103892296	103882841,103889144,103892356	0.833333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	92536682	92536704	92536682	-	High_confidence	4	4	10	0.558150	3.321928	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.900000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	39909325	39909326	39909325	+	RAMPAGE_only	4	4	7	0.390705	2.521641	chr2	39909133	39909489	LTR|ERVL-MaLR|THE1D	+	chr2	39917633	40255209	SLC8A1-AS1|NR_038441.1	+	39917633,39922848,40104908,40251683,40254419	39917659,39922889,40104962,40251774,40255209	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	39810033	39810094	39810033	-	High_confidence	15	15	55	3.069827	4.961007	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.690909
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	4143196	4143215	4143199	+	High_confidence	51	52	109	6.083839	5.367725	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.972477
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	70154237	70154238	70154237	+	High_confidence	5	8	8	0.446520	2.500000	chr4	70153923	70154270	LINE|RTE-X|L4_A_Mam	-	chr4	70154242	70166606	PRR27|ENST00000509633.1	+	70154242,70154745,70156053,70158327,70161585,70162694	70154426,70154791,70156077,70158900,70161630,70166606	0.750000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	103181328	103181329	103181328	-	RAMPAGE_only	19	19	19	1.060486	3.932138	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.578947
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	10710653	10710654	10710653	-	High_confidence	9	9	9	0.502335	2.725481	chr12	10710581	10711015	DNA|hAT-Charlie|Charlie1b	+	chr12	10701274	10710714	YBX3|ENST00000541351.3	-	10701274,10701959,10703522,10704050,10709907,10710653	10701353,10702134,10703619,10704148,10710114,10710714	0.555556
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	12522682	12522704	12522682	+	RAMPAGE_only	6	7	12	0.669780	3.251629	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.916667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	151687233	151687241	151687233	-	High_confidence	3	3	7	0.390705	2.807355	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	56835470	56835482	56835481	-	High_confidence	8	9	18	1.004671	3.734522	chr19	56835430	56835525	LINE|L2|L2c	+	chr19	56814387	56836078	MSTRG.22282.24	-	56814387,56817745,56818599,56821650,56822752,56823589,56824261,56826387,56836017	56817579,56817838,56818702,56821754,56822836,56823679,56824741,56826463,56836078	0.666667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	70590296	70590309	70590308	+	RAMPAGE_only	3	3	8	0.446520	2.750000	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.625000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	81170402	81170420	81170419	-	High_confidence	10	10	29	1.618636	4.430632	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.827586
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	3062922	3062983	3062922	-	High_confidence	17	19	60	3.348902	5.096501	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.950000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	80927146	80927147	80927146	-	RAMPAGE_only	7	8	10	0.558150	2.947703	chr14	80925611	80928702	LINE|L1|L1PB3	+	chr14	80496473	80939540	CEP128|ENST00000281129.7	-	80496473,80504911,80526868,80530808,80559278,80580373,80743074,80756891,80761436,80777881,80784894,80792759,80831142,80836204,80838203,80840681,80862756,80895717,80899937,80904812,80905954,80914321,80916400,80939384	80497582,80505020,80526982,80530886,80559302,80580423,80743267,80756951,80761613,80778046,80785545,80793110,80831294,80836337,80838278,80840768,80862873,80895790,80900029,80904931,80906081,80914408,80916562,80939540	0.900000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	39321623	39321624	39321623	-	RAMPAGE_only	6	6	8	0.446520	2.500000	chr21	39321465	39322038	LINE|L2|L2a	+	chr21	39184175	39313819	BRWD1|ENST00000333229.6	-	39184175,39196497,39198762,39200218,39202324,39206107,39209994,39210785,39212665,39213480,39215236,39218151,39218504,39224407,39225085,39228499,39229311,39232176,39232372,39236594,39238478,39247700,39250795,39255644,39258486,39264459,39264890,39269898,39270282,39274373,39276172,39277250,39278742,39280147,39293810,39295742,39296264,39298431,39312840,39313071,39313240,39313442	39187417,39197415,39199662,39200386,39202545,39206274,39210147,39210929,39212707,39213553,39215362,39218272,39218660,39224469,39225197,39228582,39229436,39232284,39232498,39236784,39238573,39247832,39250889,39255828,39258672,39264685,39265019,39270033,39270433,39274472,39276213,39277351,39278813,39280248,39294032,39295903,39296363,39298582,39312900,39313101,39313299,39313819	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	45833251	45833252	45833251	-	High_confidence	114	114	114	6.362914	4.719874	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	69495007	69495008	69495007	+	High_confidence	4	4	7	0.390705	2.584963	chr10	69494989	69495143	SINE|MIR|MIR3	+	chr10	69494970	69507077	TSPAN15|ENST00000486093.5	+	69494970,69495593,69498279,69504437,69506123,69506828	69495036,69495689,69498396,69504485,69506240,69507077	0.714286
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	5850869	5850886	5850881	-	High_confidence	4	4	12	0.669780	2.625815	chr19	5850730	5850957	SINE|Alu|AluJo	+	chr19	5842889	5851449	FUT3|ENST00000458379.7	-	5842889,5851389	5844851,5851449	0.583333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	85682851	85682863	85682862	-	High_confidence	4	4	8	0.446520	2.500000	chr11	85682520	85682971	DNA|hAT-Tip100|MER115	+	chr11	85660167	85682863	CREBZF|ENST00000531515.5	-	85660167,85662388,85663523,85682716	85660597,85662457,85663601,85682863	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	48489292	48489316	48489292	+	RAMPAGE_only	4	7	14	0.781410	2.753434	chr12	48489156	48489319	DNA|hAT-Tip100|MamTip3	+	chr12	48490811	48496386	C12orf54|ENST00000549398.5	+	48490811,48492946,48494797,48495551,48496180	48490836,48492995,48494979,48495595,48496386	0.928571
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	7147267	7147288	7147287	+	High_confidence	17	17	35	1.953526	4.271371	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147298	7354817	MSTRG.45047.1	+	7147298,7190883,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147606,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354817	0.942857
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	69425664	69425692	69425684	+	High_confidence	3	3	10	0.558150	2.641604	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425689	69429621	AP000439.3|ENST00000545202.1	+	69425689,69427362	69425806,69429621	0.900000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100910252	100910294	100910288	+	RAMPAGE_only	4	4	19	1.060486	3.614369	chr14	100910200	100910300	SINE|MIR|MIRc	+	chr14	100907042	100947076	MSTRG.13609.70	+	100907042,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100931545,100935881,100937488,100938956,100940450,100942838,100944925,100947076	0.947368
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100834707	100834713	100834707	+	High_confidence	6	6	10	0.558150	2.947703	chr14	100834648	100834738	LINE|L2|L2b	+	chr14	100833763	100861021	MEG3|ENST00000524035.5	+	100833763,100836166,100845457,100860690	100836075,100836300,100845533,100861021	0.900000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	6737334	6737415	6737334	+	High_confidence	13	13	103	5.748948	5.555399	chr10	6737297	6737688	LTR|ERVL-MaLR|MLT1H	+	chr10	6737336	6739432	LINP1|ENST00000649087.1	+	6737336	6739432	0.941748
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	28090125	28090143	28090131	+	High_confidence	4	4	13	0.725595	2.931209	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28089888	28102790	LINC01697|ENST00000423808.2	+	28089888,28102549	28090521,28102790	0.923077
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	11351675	11351676	11351675	-	RAMPAGE_only	8	8	12	0.669780	3.277613	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.583333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	91179462	91179526	91179525	-	High_confidence	94	124	446	24.893505	6.663086	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91145258	91179582	DCN|ENST00000393155.5	-	91145258,91151653,91153095,91157074,91158295,91164604,91178341,91179361	91146252,91151792,91153189,91157188,91158509,91164717,91178585,91179582	0.977578
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	98092595	98092615	98092614	+	RAMPAGE_only	27	27	92	5.134983	5.172928	chr6	98092422	98092646	LTR|ERVL|LTR16B2	-	chr6	97938788	98398771	AL589740.1|ENST00000607032.1	+	97938788,97969405,98076066,98099185,98275163,98292563,98294186,98398470	97938973,97969466,98076145,98099270,98275267,98292680,98294310,98398771	0.760870
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	45034833	45034841	45034840	+	RAMPAGE_only	4	4	8	0.446520	2.521641	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	0.875000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	35412634	35412635	35412634	+	RAMPAGE_only	24	25	33	1.841896	3.718139	chr10	35412569	35412888	SINE|Alu|AluSx	+	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	0.848485
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100829321	100829556	100829523	+	High_confidence	58	59	322	17.972441	7.097935	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.875776
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	174410366	174410372	174410371	+	High_confidence	4	4	9	0.502335	2.947703	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.777778
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	136142280	136142281	136142280	+	RAMPAGE_only	7	7	9	0.502335	3.169925	chr5	136142069	136142328	LINE|L2|L2c	-	chr5	136133911	136182732	MSTRG.35296.11	+	136133911,136147831,136153591,136160855,136163271,136172433,136177336	136133959,136147906,136154163,136161107,136163391,136174632,136182732	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	111911611	111911613	111911612	+	High_confidence	20	29	33	1.841896	4.601410	chr3	111911655	111911757	DNA|hAT-Ac|OldhAT1	+	chr3	111911609	111976465	PHLDB2|ENST00000495180.1	+	111911609,111913318,111919071,111920281,111932268,111939474,111940534,111945267,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111911724,111913702,111919215,111920419,111932397,111939630,111940645,111945357,111954029,111962312,111966703,111967824,111969909,111973817,111976465	0.969697
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	135965679	135965762	135965723	+	High_confidence	32	49	274	15.293319	6.329178	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.985401
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100934258	100934279	100934258	+	RAMPAGE_only	11	14	22	1.227931	3.754442	chr14	100934026	100934356	LINE|L1|L1MC1	-	chr14	100907042	100947076	MSTRG.13609.70	+	100907042,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100931545,100935881,100937488,100938956,100940450,100942838,100944925,100947076	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	35412932	35412970	35412969	+	RAMPAGE_only	13	14	28	1.562821	3.467720	chr10	35412983	35413034	LINE|L2|L2a	+	chr10	35337051	35553183	CCNY|ENST00000492478.5	+	35337051,35394815,35483403,35501500,35516522,35525963,35529972,35530123,35553018	35337207,35394878,35483478,35501535,35516623,35525999,35530030,35530243,35553183	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	19386330	19386334	19386333	-	High_confidence	5	5	14	0.781410	3.180833	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.928571
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	34244811	34244816	34244815	-	High_confidence	11	15	25	1.395376	3.468577	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34153881	34245180	MSTRG.33820.1	-	34153881,34175444,34175821,34179012,34182679,34218294,34239374,34244615	34169153,34175537,34175957,34179097,34182867,34218450,34239448,34245180	0.920000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	107580245	107580267	107580264	+	High_confidence	574	575	2808	156.728614	7.213155	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.908120
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	10844303	10844374	10844373	+	RAMPAGE_only	10	10	39	2.176786	4.013111	chr2	10844223	10844565	LINE|L2|L2a	-	chr2	10878266	10885118	LOC101929733|NR_110575.1	+	10878266,10884833	10878444,10885118	0.743590
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	167937116	167937150	167937116	+	High_confidence	2	2	12	0.669780	3.188722	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167937152	167993330	DCAF6|ENST00000455334.5	+	167937152,167951799,167966628,167974829,167987494,167991203,167993225	167937252,167951861,167966721,167975015,167987608,167991339,167993330	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	59620042	59620081	59620043	+	High_confidence	5	10	30	1.674451	4.494680	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.866667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100906104	100906105	100906104	+	High_confidence	7	7	7	0.390705	2.807355	chr14	100905713	100906123	LINE|L1|L1MC5	-	chr14	100906043	100947076	MSTRG.13609.66	+	100906043,100906935,100931913,100938879,100940364,100942761,100944808,100947033	100906163,100931545,100937488,100938956,100940450,100942838,100944925,100947076	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	94640103	94640107	94640103	+	RAMPAGE_only	6	7	11	0.613965	2.521928	chr11	94639948	94640291	LTR|ERV1|MER61A	+	chr11	94638044	94652884	AP000943.2|ENST00000648581.1	+	94638044,94638251,94638673,94639825,94640213,94641999,94643969,94647334,94648016,94648259,94650473,94651476	94638160,94638353,94638767,94639897,94640322,94642157,94644134,94647578,94648108,94648388,94650537,94652884	0.545455
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	101624758	101624759	101624758	-	RAMPAGE_only	10	10	15	0.837226	3.640224	chr7	101624689	101625117	LINE|L2|L2c	+	chr7	101613474	101627524	MYL10|ENST00000642629.2	-	101613474,101613661,101616219,101622095,101622996,101624171,101627478	101613573,101613710,101616298,101622200,101623072,101624264,101627524	0.666667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	107732843	107732874	107732867	-	RAMPAGE_only	5	5	19	1.060486	3.725481	chr11	107732820	107733121	SINE|Alu|AluSz	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.947368
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	30373014	30373015	30373014	+	High_confidence	56	79	81	4.521018	4.547391	chr16	30372675	30373134	LINE|L2|L2b	+	chr16	30372979	30377991	MSTRG.16211.3	+	30372979,30374821,30375819,30376144,30376422,30376619,30377653,30377795	30373016,30374860,30375912,30376220,30376527,30376698,30377702,30377991	0.962963
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	133370016	133370029	133370016	-	RAMPAGE_only	2	2	7	0.390705	2.521641	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	57516416	57516417	57516416	+	RAMPAGE_only	16	16	17	0.948856	3.577820	chr15	57516211	57516424	SINE|MIR|MIR	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.941176
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	147173219	147173242	147173225	+	High_confidence	4	4	17	0.948856	3.616875	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.647059
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	101670364	101670409	101670408	+	RAMPAGE_only	22	39	98	5.469873	5.464842	chr12	101670426	101670659	LINE|CR1|L3b	+	chr12	101666202	101685811	MYBPC1|ENST00000549608.1	+	101666202,101667731,101670320,101673426,101675291,101677234,101678101,101680342,101685581	101666797,101667899,101670409,101673622,101675431,101677394,101678238,101680529,101685811	0.989796
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	57746128	57746129	57746128	+	High_confidence	11	11	11	0.613965	3.095795	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	60447246	60447277	60447246	+	RAMPAGE_only	19	19	47	2.623307	5.262692	chr18	60443442	60447792	LINE|L1|L1PA11	-	chr18	60329232	60538595	AC091576.1|ENST00000650201.1	+	60329232,60479570,60535632,60538299	60329345,60479672,60535755,60538595	0.765957
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	39657326	39657337	39657336	+	High_confidence	4	4	8	0.446520	2.750000	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657326	39662889	B3GALT5|ENST00000380618.5	+	39657326,39659752,39660559	39657599,39659912,39662889	0.625000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	15001807	15001826	15001807	+	High_confidence	20	29	94	5.246613	5.640784	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.521277
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	22082486	22082527	22082523	-	RAMPAGE_only	4	4	22	1.227931	4.011365	chr12	22082443	22082846	LTR|ERVL|LTR16A	+	chr12	22063772	22070613	ST8SIA1|ENST00000536535.1	-	22063772,22066344,22068862,22070571	22063927,22066435,22069020,22070613	0.954545
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	10655729	10655766	10655749	-	RAMPAGE_only	15	15	51	2.846567	3.591886	chr17	10655661	10655949	SINE|Alu|AluSg	-	chr17	10652272	10657309	MYH3|ENST00000582580.1	-	10652272,10654860,10656089,10657288	10652563,10655072,10656148,10657309	0.921569
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	133089659	133089678	133089677	+	RAMPAGE_only	6	7	15	0.837226	3.773557	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.800000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100831484	100831521	100831487	+	High_confidence	2	2	11	0.613965	3.121928	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100831480	100861026	MEG3|ENST00000555928.5	+	100831480,100834631,100836166,100845457,100860690	100831534,100834751,100836300,100845533,100861026	0.545455
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	139344535	139344584	139344547	+	High_confidence	18	18	51	2.846567	4.522699	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.980392
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	98943525	98943576	98943575	+	High_confidence	16	20	59	3.293087	5.315175	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	99070792	COL15A1|ENST00000375001.7	+	98943638,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.949153
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	21200825	21200826	21200825	+	High_confidence	8	8	10	0.558150	2.846439	chr6	21200835	21201081	LINE|L1|L1MC3	+	chr6	21200811	21231441	CDKAL1|ENST00000476517.1	+	21200811,21201109,21230847	21200892,21201274,21231441	0.900000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	116648820	116648842	116648839	-	RAMPAGE_only	2	2	9	0.502335	2.750000	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.888889
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	12927690	12927734	12927733	+	High_confidence	16	16	33	1.841896	4.536670	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.666667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	79481730	79481791	79481762	-	High_confidence	18	18	135	7.535030	5.627714	chr5	79481262	79481938	LINE|L1|L1MEc	+	chr5	79437495	79481772	MSTRG.34421.6	-	79437495,79447052,79450989,79456861,79481631	79439149,79447145,79451121,79457018,79481772	0.629630
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	57464247	57464248	57464247	+	RAMPAGE_only	5	7	7	0.390705	2.521641	chr4	57464044	57464454	LTR|ERVL-MaLR|MLT1J1	+	chr4	57491389	57495233	AC013724.1|ENST00000511962.1	+	57491389,57494553	57491492,57495233	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	176411458	176411459	176411458	-	RAMPAGE_only	258	297	368	20.539932	6.173593	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.904891
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	1655436	1655444	1655443	-	RAMPAGE_only	4	5	9	0.502335	2.503258	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1659012	CDK11B|ENST00000341832.10	-	1635226,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1645125,1649498,1652438,1655368,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1642508,1645262,1649637,1652566,1655484,1657498,1659012	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	11795578	11795579	11795578	+	High_confidence	23	23	31	1.730266	4.373551	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	29647540	29647557	29647556	+	High_confidence	4	4	10	0.558150	2.947703	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.900000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	148310059	148310094	148310093	+	RAMPAGE_only	11	13	19	1.060486	3.932138	chr5	148310047	148310490	DNA|TcMar-Tigger|Tigger2a	+	chr5	148312422	148315922	SPINK7|ENST00000274565.4	+	148312422,148313373,148314099,148315638	148312544,148313399,148314224,148315922	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	3536827	3536873	3536866	-	High_confidence	5	8	40	2.232601	4.784184	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.925000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	96934341	96934358	96934357	+	RAMPAGE_only	4	4	10	0.558150	2.947703	chr5	96934085	96934504	LINE|L2|L2a	-	chr5	96935463	97037515	LNPEP|ENST00000231368.9	+	96935463,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96936174,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97037515	0.900000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	143193432	143193466	143193432	+	RAMPAGE_only	20	20	40	2.232601	4.921928	chr2	143192526	143193504	DNA|DNA|MER130	+	chr2	143129412	143437357	ARHGAP15|ENST00000552641.5	+	143129412,143155476,143202133,143216383,143228580,143250510,143435600,143436912	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437357	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	22717935	22717972	22717935	-	High_confidence	98	103	255	14.232834	6.809313	chr6	22717913	22718256	DNA|hAT-Ac|OldhAT1	-	chr6	22643509	22717924	LOC105374972|NR_134614.1	-	22643509,22666994,22717720	22644018,22667039,22717924	0.560784
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	72627651	72627693	72627651	-	RAMPAGE_only	8	8	26	1.451191	4.403856	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72425484	72665004	LINC01572|ENST00000561611.2	-	72425484,72479682,72664891	72427457,72479790,72665004	0.538462
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	120125627	120125653	120125627	+	High_confidence	3	3	13	0.725595	3.026987	chr8	120125674	120125869	DNA|hAT-Tip100?|MamRep1879	+	chr8	120125143	120277865	COL14A1|ENST00000432943.6	+	120125143,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120277484	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120277865	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	49977920	49977958	49977957	+	RAMPAGE_only	26	27	123	6.865249	6.262443	chrX	49977956	49978051	SINE|MIR|MIR	+	chrX	50042337	50092660	CLCN5|ENST00000643129.1	+	50042337,50050282,50054439,50069878,50072488,50075794,50080593,50081640,50085979,50086327,50088697,50090115,50090669,50092128	50042462,50050413,50054633,50070030,50072588,50075982,50080716,50081847,50086060,50086870,50088884,50090514,50090886,50092660	0.544715
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	41705825	41705847	41705846	-	High_confidence	5	5	10	0.558150	2.721928	chr6	41705810	41705860	DNA|hAT-Tip100|MamTip2	+	chr6	41687909	41705940	TFEB|ENST00000419574.5	-	41687909,41689730,41690662,41691000,41705646	41688028,41689811,41690917,41691235,41705940	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	34973974	34973991	34973977	+	High_confidence	5	5	12	0.669780	3.095795	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34973983	34975576	AL392046.2|ENST00000635301.1	+	34973983,34974193,34974657	34974088,34974282,34975576	0.583333
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	72305913	72305914	72305913	-	High_confidence	24	26	26	1.451191	4.220176	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	0.923077
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	32059155	32059180	32059169	+	High_confidence	5	5	12	0.669780	3.459432	chr22	32059153	32059234	SINE|Alu|AluSz6	+	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	0.916667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	134432435	134432453	134432435	-	High_confidence	2	3	10	0.558150	2.846439	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	0.900000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	89161450	89161486	89161450	+	RAMPAGE_only	2	2	8	0.446520	2.500000	chr6	89161143	89161517	LINE|L2|L2b	-	chr6	89146049	89165569	PM20D2|NM_001010853.2	+	89146049,89149264,89153042,89154747,89158324,89161782,89162108	89146609,89149413,89153185,89154902,89158460,89161890,89165569	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	45192659	45192666	45192659	-	RAMPAGE_only	95	96	171	9.544371	6.470638	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	0.801170
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	25346012	25346026	25346023	-	High_confidence	19	20	68	3.795422	5.118568	chr15	25345979	25347018	LINE|L1|L1ME2	+	chr15	25333727	25346031	UBE3A|ENST00000636667.1	-	25333727,25340084,25345979	25339257,25340228,25346031	0.911765
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	43120107	43120148	43120147	+	RAMPAGE_only	6	7	33	1.841896	4.671781	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43145152	43156396	FAM183A|ENST00000410048.5	+	43145152,43150760,43152827,43156205	43145297,43150820,43152931,43156396	0.636364
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	115110165	115110207	115110206	-	RAMPAGE_only	8	9	18	1.004671	3.836592	chr3	115109927	115110224	SINE|Alu|AluSx	+	chr3	114338651	115100361	MSTRG.29951.7	-	114338651,114350273,114380216,114389004,114500351,114693527,114801100,114900303,114974365,115071218,115100174	114339426,114351878,114380404,114389105,114500391,114693575,114801174,114900342,114974416,115071414,115100361	0.666667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	101975321	101975329	101975321	-	RAMPAGE_only	2	2	9	0.502335	3.000000	chr8	101975304	101975478	DNA|hAT-Charlie|MER5A	-	chr8	101687894	102124320	NCALD|ENST00000521599.5	-	101687894,101692790,101719251,101915808,102020236,102029009,102124236	101689406,101692896,101719648,101915858,102020289,102029096,102124320	0.666667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	123211355	123211356	123211355	+	RAMPAGE_only	9	10	11	0.613965	3.459432	chr7	123211158	123211525	LTR|ERVL-MaLR|THE1D	+	chr7	123456628	123459856	AC073323.1|ENST00000419832.1	+	123456628,123457398,123459692	123456765,123457548,123459856	0.727273
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	5487603	5487636	5487603	-	High_confidence	12	12	48	2.679122	4.995766	chr10	5487372	5487553	SINE|MIR|MIR	-	chr10	5485054	5487618	MSTRG.4206.1	-	5485054,5487498	5486634,5487618	0.604167
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100934020	100934044	100934020	+	RAMPAGE_only	3	3	8	0.446520	2.750000	chr14	100933883	100934023	LINE|L1|L1MC1	-	chr14	100907042	100947076	MSTRG.13609.70	+	100907042,100931913,100937402,100938879,100940364,100942761,100944808,100947033	100931545,100935881,100937488,100938956,100940450,100942838,100944925,100947076	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	8608023	8608049	8608048	+	RAMPAGE_only	4	4	11	0.613965	3.121928	chr18	8607829	8608179	SINE|Alu|AluJr	+	chr18	8609436	8639381	RAB12|ENST00000649141.1	+	8609436,8624937,8633188,8635532,8636252,8638148	8609953,8624998,8633327,8635622,8636357,8639381	0.909091
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	122042082	122042088	122042082	-	RAMPAGE_only	6	6	16	0.893041	2.739572	chr9	122042012	122042298	SINE|Alu|AluSz6	-	chr9	121988909	122092766	TTLL11|ENST00000487468.5	-	121988909,122039271,122092686	121989770,122039368,122092766	0.875000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	79492572	79492601	79492595	+	High_confidence	2	2	8	0.446520	2.750000	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.750000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	98943483	98943484	98943483	+	High_confidence	19	19	22	1.227931	3.880180	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.954545
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	65440330	65440424	65440342	+	RAMPAGE_only	4	4	50	2.790752	4.903465	chr11	65440323	65440484	SINE|Alu|AluJo	+	chr11	65423637	65445540	MSTRG.7158.9	+	65423637,65425212	65425114,65445540	1.000000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	20423688	20423704	20423697	-	RAMPAGE_only	5	6	13	0.725595	3.251629	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20404966	20424969	ZNF826P|ENST00000597334.1	-	20404966,20408949,20424785	20406132,20409045,20424969	0.615385
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	53427241	53427250	53427241	+	RAMPAGE_only	13	13	30	1.674451	3.806239	chr12	53427040	53427257	LINE|L2|L2a	-	chr12	53423934	53431473	AMHR2|ENST00000379791.7	+	53423934,53424287,53424708,53425164,53425454,53425688,53428895,53429452,53431176	53423983,53424470,53424900,53425242,53425573,53425919,53429010,53429625,53431473	0.966667
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	39627120	39627121	39627120	-	High_confidence	7	7	7	0.390705	2.521641	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.857143
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	90733370	90733383	90733382	-	RAMPAGE_only	3	5	8	0.446520	3.000000	chr14	90733163	90733377	SINE|MIR|MIRb	-	chr14	90540587	90689712	TTC7B|ENST00000555005.5	-	90540587,90578105,90593485,90602005,90610741,90617928,90644047,90646950,90652840,90654992,90657173,90658303,90676522,90680471,90689539	90541589,90578308,90593626,90602200,90610839,90618045,90644208,90647023,90652898,90655110,90657278,90658387,90676660,90680535,90689712	0.625000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	209429204	209429239	209429204	+	High_confidence	5	5	17	0.948856	3.625000	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.764706
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	69237164	69237186	69237182	-	RAMPAGE_only	6	7	42	2.344231	4.784942	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69197714	69320944	FRMD4B|ENST00000470070.6	-	69197714,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69320888	69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69320944	0.500000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	30846802	30846823	30846802	-	RAMPAGE_only	11	11	22	1.227931	2.684017	chr9	30846414	30847027	LINE|L1|L1M4	+	chr9	30831877	30832225	RPS26P2|ENST00000440331.1	-	30831877	30832225	0.727273
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	2975658	2975667	2975658	+	RAMPAGE_only	3	3	9	0.502335	2.750000	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	0.888889
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	7913248	7913268	7913248	-	RAMPAGE_only	4	4	12	0.669780	3.584963	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.750000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	123060167	123060256	123060255	-	High_confidence	15	19	166	9.265296	5.142648	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.602410
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	52615426	52615427	52615426	-	High_confidence	7	7	10	0.558150	2.725481	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.900000
tongue_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	99891976	99892057	99892056	-	RAMPAGE_only	30	30	99	5.525688	4.795603	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.979798
transverse_colon_female_adult_53_years	chr5	75336514	75336529	75336514	+	High_confidence	4	4	13	0.627405	3.334679	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.846154
transverse_colon_female_adult_53_years	chr22	39021125	39021156	39021150	+	High_confidence	20	27	95	4.584884	5.548417	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.915789
transverse_colon_female_adult_53_years	chr17	59620046	59620100	59620099	+	High_confidence	5	7	19	0.916977	3.461320	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.947368
transverse_colon_female_adult_53_years	chr11	121586173	121586200	121586199	+	RAMPAGE_only	4	5	13	0.627405	3.546594	chr11	121585554	121586209	LINE|L1|L1ME4b	-	chr11	121576837	121629678	SORL1|ENST00000534286.5	+	121576837,121577280,121583457,121586221,121588019,121589258,121590039,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121577038,121577400,121583583,121586329,121588151,121589390,121590174,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121629678	0.846154
transverse_colon_female_adult_53_years	chr16	66408519	66408539	66408519	+	High_confidence	4	4	15	0.723929	3.378783	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.533333
transverse_colon_female_adult_53_years	chr7	6590236	6590286	6590257	+	High_confidence	6	7	32	1.544382	4.601410	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	1.000000
transverse_colon_female_adult_53_years	chr3	39407628	39407738	39407682	+	High_confidence	16	19	99	4.777931	5.463043	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.929293
transverse_colon_female_adult_53_years	chr19	3062922	3062940	3062922	-	High_confidence	19	21	56	2.702668	4.912114	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.964286
transverse_colon_female_adult_53_years	chr11	123797502	123797503	123797502	+	High_confidence	4	4	7	0.337834	2.807355	chr11	123796966	123797634	LTR|ERV1|LTR76	-	chr11	123797464	123817068	STRG.84536.1	+	123797464,123816990	123797992,123817068	0.714286
transverse_colon_female_adult_53_years	chr2	159428345	159428357	159428356	-	RAMPAGE_only	14	15	34	1.640906	4.536670	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.764706
transverse_colon_female_adult_53_years	chr11	90251204	90251205	90251204	+	High_confidence	5	8	8	0.386095	3.000000	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.625000
transverse_colon_female_adult_53_years	chr13	24580622	24580623	24580622	+	High_confidence	20	20	27	1.303072	4.213661	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.666667
transverse_colon_female_adult_53_years	chr6	30108293	30108309	30108293	-	RAMPAGE_only	3	3	10	0.482619	3.121928	chr6	30108284	30108587	SINE|Alu|AluSq	+	chr6	30103056	30111706	STRG.48537.3	-	30103056,30105167,30108052,30109025,30110447,30111647	30104167,30105242,30108168,30109048,30110678,30111706	0.500000
transverse_colon_female_adult_53_years	chr14	93051027	93051062	93051027	-	RAMPAGE_only	11	12	29	1.399596	4.720050	chr14	93050957	93051066	LINE|L2|L2b	+	chr14	92958233	93066358	ITPK1|ENST00000556185.5	-	92958233,92962354,92962750,92993879,93016675,93066184	92958366,92962395,92962849,92993997,93016801,93066358	0.517241
transverse_colon_female_adult_53_years	chr5	131316069	131316102	131316083	+	RAMPAGE_only	7	7	21	1.013501	3.921928	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131278752	131394667	STRG.44655.7	+	131278752,131315975,131359208,131385542,131390992,131391828	131287813,131316144,131359547,131385644,131391108,131394667	0.761905
transverse_colon_female_adult_53_years	chr22	22336752	22336753	22336752	+	RAMPAGE_only	14	18	18	0.868715	3.794653	chr22	22331689	22336920	LINE|L1|L1PA8	+	chr22	22758699	22759218	IGLV2-14|ENST00000390312.2	+	22758699,22758903	22758786,22759218	0.555556
transverse_colon_female_adult_53_years	chr6	113873326	113873347	113873339	-	High_confidence	82	96	416	20.076964	6.023797	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.889423
transverse_colon_female_adult_53_years	chr12	105231533	105231535	105231534	-	RAMPAGE_only	7	10	15	0.723929	3.906891	chr12	105231352	105231559	SINE|MIR|MIRb	-	chr12	105177109	105233154	APPL2|ENST00000547809.5	-	105177109,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105233090	105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105233154	0.800000
transverse_colon_female_adult_53_years	chr12	20418336	20418351	20418336	+	RAMPAGE_only	3	3	10	0.482619	2.947703	chr12	20418113	20418336	SINE|MIR|MIRb	+	chr12	20369244	20684107	PDE3A|NM_000921.4	+	20369244,20556659,20613442,20616229,20621295,20629907,20633692,20634901,20637099,20639845,20646489,20646750,20648687,20650444,20653946,20680029	20370244,20556710,20613700,20616384,20621411,20630127,20633778,20635056,20637237,20639957,20646603,20646950,20648891,20650600,20654205,20684107	0.600000
transverse_colon_female_adult_53_years	chr1	176162918	176162957	176162936	-	RAMPAGE_only	5	6	18	0.868715	3.969816	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944852	176184664	STRG.8891.4	-	175944852,175947194,175986942,175988287,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176136487,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176136547,176149074,176162988,176163891,176176007,176184664	0.833333
transverse_colon_female_adult_53_years	chr4	75180938	75180983	75180938	-	High_confidence	12	12	66	3.185288	4.652751	chr4	75180613	75186400	LINE|L1|L1PB1	+	chr4	75178687	75180975	STRG.34695.1	-	75178687,75180410,75180803	75178890,75180465,75180975	0.909091
transverse_colon_female_adult_53_years	chr11	85810955	85810972	85810971	-	High_confidence	2	2	7	0.337834	2.584963	chr11	85810837	85810962	SINE|MIR|MIR3	-	chr11	85694274	85811129	SYTL2|ENST00000316356.8	-	85694274,85696182,85697978,85700514,85704857,85707428,85709330,85711112,85714412,85718789,85720857,85727895,85733938,85736500,85737574,85745636,85748271,85757624,85810953	85695340,85696388,85698078,85700593,85705028,85707531,85709500,85711232,85714507,85718843,85720959,85727967,85734742,85736615,85737656,85745772,85748423,85758114,85811129	0.714286
transverse_colon_female_adult_53_years	chr3	193614854	193614861	193614854	+	High_confidence	3	3	7	0.337834	2.584963	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.714286
transverse_colon_female_adult_53_years	chr7	150393441	150393448	150393447	+	High_confidence	15	15	24	1.158286	4.251629	chr7	150392833	150393658	LINE|L1|L1MC2	-	chr7	150393380	150398562	STRG.62696.1	+	150393380,150396512	150393507,150398562	0.791667
transverse_colon_female_adult_53_years	chr7	150323671	150323751	150323750	-	High_confidence	52	56	243	11.727650	6.045155	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	0.897119
transverse_colon_female_adult_53_years	chr11	123060124	123060253	123060168	-	High_confidence	18	19	154	7.432338	5.289578	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	0.980519
transverse_colon_female_adult_53_years	chr2	218287259	218287280	218287279	-	High_confidence	5	5	18	0.868715	3.614369	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.611111
transverse_colon_female_adult_53_years	chr13	21593013	21593014	21593013	-	RAMPAGE_only	11	11	11	0.530881	3.459432	chr13	21590883	21594990	LINE|L1|L1PA8A	+	chr13	21510026	21603711	MICU2|ENST00000476895.5	-	21510026,21514352,21521244,21522602,21539301,21539656,21566796,21582873,21603573	21510101,21514418,21521327,21522650,21539377,21539688,21566944,21582923,21603711	0.636364
transverse_colon_female_adult_53_years	chr3	108555437	108555451	108555437	+	RAMPAGE_only	3	3	9	0.434357	2.947703	chr3	108555257	108556040	LTR|ERV1|LTR39	+	chr3	108589489	108694846	DZIP3|NM_014648.3	+	108589489,108605334,108608088,108611173,108616540,108624443,108625844,108629061,108632952,108634870,108636615,108637495,108642437,108644163,108646616,108647942,108648917,108651136,108654144,108661876,108662129,108669680,108672559,108674077,108675785,108677496,108684215,108686444,108687975,108688592,108688822,108690786,108693359	108589839,108605438,108608158,108611329,108616657,108624524,108625969,108629176,108633072,108634972,108636708,108637548,108642514,108644781,108646649,108648112,108648962,108651162,108654310,108661972,108662257,108669749,108672656,108674181,108675873,108677598,108684341,108686584,108688096,108688736,108688924,108690903,108694846	1.000000
transverse_colon_female_adult_53_years	chr1	160222037	160222063	160222037	-	RAMPAGE_only	2	3	9	0.434357	2.750000	chr1	160222014	160222281	LINE|L1|L1MC4	-	chr1	160217485	160224472	STRG.7594.10	-	160217485,160218323,160218848,160224441	160217708,160218440,160222781,160224472	0.888889
transverse_colon_female_adult_53_years	chr10	119038238	119038239	119038238	-	RAMPAGE_only	4	5	7	0.337834	2.584963	chr10	119037907	119038207	SINE|Alu|AluSq2	-	chr10	119033669	119080804	EIF3A|ENST00000369144.7	-	119033669,119037118,119038237,119041993,119044053,119049800,119050520,119051198,119056739,119056935,119057955,119059211,119059601,119060745,119061223,119065398,119069445,119070885,119072889,119073440,119073746,119080627	119036268,119037309,119038439,119042772,119044142,119049985,119050674,119051321,119056853,119057040,119058303,119059397,119059718,119060844,119061328,119065570,119069654,119071085,119073053,119073577,119073937,119080804	0.857143
transverse_colon_female_adult_53_years	chr1	1721663	1721708	1721704	-	High_confidence	3	3	14	0.675667	3.378783	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.785714
transverse_colon_female_adult_53_years	chr2	109694259	109694263	109694262	+	High_confidence	7	9	14	0.675667	3.392747	chr2	109694059	109694406	LTR|ERVL-MaLR|MSTA	+	chr2	109694237	109705065	STRG.17237.1	+	109694237,109695309,109701101	109694525,109695518,109705065	0.571429
transverse_colon_female_adult_53_years	chr11	34656783	34656793	34656783	+	RAMPAGE_only	2	2	6	0.289572	2.584963	chr11	34656421	34656843	LINE|L2|L2a	+	chr11	34632463	34659317	EHF|ENST00000531794.5	+	34632463,34642627,34646438,34649018,34651541,34651736,34656907,34658532,34658831	34632652,34642727,34646684,34649081,34651610,34651805,34656970,34658728,34659317	0.833333
transverse_colon_female_adult_53_years	chr17	4736353	4736362	4736361	-	High_confidence	7	8	12	0.579143	2.663533	chr17	4736085	4736351	LTR|ERV1|MER39	-	chr17	4733574	4736380	CXCL16|ENST00000576153.5	-	4733574,4734582,4735091,4736288	4734479,4734652,4735508,4736380	0.833333
transverse_colon_female_adult_53_years	chr12	643625	643636	643635	-	High_confidence	9	9	32	1.544382	4.256565	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.781250
transverse_colon_female_adult_53_years	chr15	89804981	89804986	89804985	-	High_confidence	3	5	8	0.386095	2.521641	chr15	89804868	89804982	SINE|MIR|MIRb	-	chr15	89803984	89804851	ANPEP|ENST00000559887.1	-	89803984,89804252,89804490	89804002,89804407,89804851	0.750000
transverse_colon_female_adult_53_years	chr20	3873785	3873845	3873811	+	RAMPAGE_only	8	12	53	2.557882	5.185375	chr20	3873828	3874352	LINE|L1|L1ME3A	+	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	1.000000
transverse_colon_female_adult_53_years	chr11	58578102	58578133	58578102	-	High_confidence	92	98	217	10.472840	6.447536	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58542093	58578166	STRG.81205.4	-	58542093,58549972,58554840,58564154,58570555,58577985	58549867,58551232,58554940,58564201,58570713,58578166	0.635945
transverse_colon_female_adult_53_years	chr16	53445773	53445783	53445780	+	High_confidence	16	16	41	1.978739	4.560667	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.682927
transverse_colon_female_adult_53_years	chr10	16794073	16794096	16794073	-	RAMPAGE_only	4	4	8	0.386095	3.000000	chr10	16793814	16794303	LTR|ERVL|MLT2B2	+	chr10	16590610	16817383	RSU1|ENST00000377921.7	-	16590610,16695022,16752538,16752917,16754870,16764389,16782033,16816972	16593496,16695155,16752653,16753000,16754989,16764510,16782084,16817383	0.625000
transverse_colon_female_adult_53_years	chr15	64326658	64326660	64326659	+	High_confidence	16	21	25	1.206548	4.251629	chr15	64326660	64332685	LINE|L1|L1PA2	+	chr15	64326666	64327173	STRG.101888.1	+	64326666	64327173	0.520000
transverse_colon_female_adult_53_years	chr17	10802394	10802395	10802394	+	High_confidence	11	11	12	0.579143	3.095795	chr17	10802319	10802484	SINE|MIR|MIRb	-	chr17	10802113	10805430	STRG.108634.4	+	10802113	10805430	0.666667
transverse_colon_female_adult_53_years	chr13	52159863	52159881	52159863	-	High_confidence	3	3	7	0.337834	2.521641	chr13	52159786	52159872	SINE|MIR|MIRc	+	chr13	52132642	52159861	NEK3|ENST00000610828.4	-	52132642,52133688,52135728,52136115,52136799,52141019,52143914,52144690,52148414,52151145,52151324,52152608,52153894,52154079,52156074,52159542	52133226,52133815,52135863,52136259,52136902,52141069,52143987,52144891,52148469,52151232,52151392,52152692,52153992,52154173,52156248,52159861	0.857143
transverse_colon_female_adult_53_years	chr2	87469947	87469950	87469949	+	High_confidence	211	381	425	20.511322	4.619378	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87468960	87471752	STRG.16101.1	+	87468960	87471752	0.882353
transverse_colon_female_adult_53_years	chr1	40388737	40388738	40388737	+	RAMPAGE_only	211	212	230	11.100245	5.239976	chr1	40387671	40389155	LTR|ERV1|LTR12C	+	chr1	40373725	40415369	STRG.1948.2	+	40373725,40387855,40406735,40408652,40409756,40413015,40414158,40415271	40387813,40396006,40406869,40408738,40409835,40413102,40414240,40415369	0.956522
transverse_colon_female_adult_53_years	chr9	19126407	19126424	19126407	-	RAMPAGE_only	2	2	6	0.289572	2.584963	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19123234	19127476	PLIN2|ENST00000380465.7	-	19123234,19123564,19126113,19126396,19127418	19123476,19123647,19126309,19126448,19127476	0.500000
transverse_colon_female_adult_53_years	chr14	81170392	81170420	81170419	-	High_confidence	11	12	60	2.895716	4.543245	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.900000
transverse_colon_female_adult_53_years	chr3	152335065	152335095	152335094	+	RAMPAGE_only	3	3	8	0.386095	2.500000	chr3	152335017	152335180	DNA|DNA|UCON8	+	chr3	152329729	152432917	STRG.30362.16	+	152329729,152414940,152432716	152338673,152415111,152432917	1.000000
transverse_colon_female_adult_53_years	chr4	119217569	119217570	119217569	+	RAMPAGE_only	7	7	9	0.434357	3.169925	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119212742	119294638	STRG.37202.2	+	119212742,119217549,119235289,119239217,119245336,119248747,119256245,119256440,119259819,119260506,119261714,119267319,119268267,119269690,119271295,119273631,119291164,119292337	119212873,119217673,119235411,119239903,119245429,119248882,119256359,119256523,119259925,119260653,119261864,119267482,119268420,119269837,119272034,119273708,119291261,119294638	0.555556
transverse_colon_female_adult_53_years	chr16	28608285	28608330	28608308	-	High_confidence	5	5	30	1.447858	3.967720	chr16	28608009	28608286	SINE|Alu|AluSp	-	chr16	28605195	28608920	SULT1A1|ENST00000569554.5	-	28605195,28606055,28606760,28606950,28608290,28608477,28608707	28605933,28606236,28606855,28607077,28608388,28608603,28608920	0.866667
transverse_colon_female_adult_53_years	chr6	12350731	12350736	12350735	-	High_confidence	7	7	15	0.723929	3.640224	chr6	12350503	12350887	LTR|ERVL-MaLR|MSTA	-	chr6	12350071	12350639	STRG.47719.1	-	12350071	12350639	0.800000
transverse_colon_female_adult_53_years	chr15	59555942	59556037	59556036	+	High_confidence	187	202	673	32.480281	7.130945	chr15	59555944	59556107	SINE|Alu|AluJr	+	chr15	59555954	59560143	STRG.101515.1	+	59555954	59560143	0.893016
transverse_colon_female_adult_53_years	chr16	29760809	29760814	29760809	+	High_confidence	4	4	10	0.482619	3.321928	chr16	29760474	29761018	LTR|ERVL-MaLR|MLT1G1	+	chr16	29760739	29780491	STRG.106215.2	+	29760739,29779259,29779504,29780103	29760949,29779321,29779637,29780491	0.700000
transverse_colon_female_adult_53_years	chr3	139344535	139344555	139344547	+	High_confidence	48	48	120	5.791432	5.511791	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.908333
transverse_colon_female_adult_53_years	chr6	106733640	106733662	106733640	-	RAMPAGE_only	7	8	20	0.965239	3.511085	chr6	106733614	106734506	DNA|hAT-Tip100|MER97c	+	chr6	106717451	106746004	LINC02532|ENST00000602621.5	-	106717451,106724566,106733981,106735297,106739700,106744940	106718242,106724660,106734073,106735418,106739770,106746004	0.800000
transverse_colon_female_adult_53_years	chr7	104940943	104940944	104940943	+	High_confidence	581	584	593	28.619326	5.540602	chr7	104939974	104941430	LTR|ERV1|LTR12C	+	chr7	104941062	104962060	AC007384.1|ENST00000415513.1	+	104941062,104961983	104941670,104962060	0.974705
transverse_colon_female_adult_53_years	chr1	31448438	31448500	31448438	+	High_confidence	47	54	123	5.936218	5.517198	chr1	31448200	31448510	LINE|L1|L1M5	-	chr1	31448324	31449836	STRG.1356.2	+	31448324,31449556	31449456,31449836	0.983740
transverse_colon_female_adult_53_years	chr17	81727433	81727476	81727475	+	High_confidence	8	8	41	1.978739	4.831687	chr17	81727280	81727646	LTR|ERVL-MaLR|MLT1K	+	chr17	81727343	81728442	STRG.111938.1	+	81727343	81728442	0.780488
transverse_colon_female_adult_53_years	chr14	96365193	96365216	96365193	+	High_confidence	2	3	7	0.337834	2.807355	chr14	96365016	96365548	LINE|L2|L2a	-	chr14	96364735	96387290	GSKIP|NM_001271904.1	+	96364735,96379687,96382246,96385522	96365266,96379788,96382505,96387290	0.857143
transverse_colon_female_adult_53_years	chr17	39917430	39917453	39917430	-	High_confidence	2	2	9	0.434357	2.500000	chr17	39917413	39917823	LTR|ERV1|LTR7B	+	chr17	39904594	39917540	GSDMB|NM_018530.2	-	39904594,39905425,39905846,39906110,39908957,39909755,39912325,39917081	39904964,39905496,39905985,39906271,39909042,39909924,39912497,39917540	0.888889
transverse_colon_female_adult_53_years	chr6	34953307	34953317	34953316	+	RAMPAGE_only	7	8	15	0.723929	3.640224	chr6	34953113	34953356	LINE|L2|L2b	-	chr6	34889313	34989316	ANKS1A|ENST00000650178.1	+	34889313,34967238,34970009,34972580,34981689,34982751,34983112,34983323,34985081,34989223	34889599,34967319,34970166,34972643,34981986,34982827,34983214,34983425,34985278,34989316	0.733333
transverse_colon_female_adult_53_years	chr16	28952152	28952153	28952152	+	RAMPAGE_only	5	5	7	0.337834	2.807355	chr16	28952153	28952214	DNA|hAT-Ac|OldhAT1	+	chr16	28951006	28965698	STRG.106116.2	+	28951006,28952131,28954564,28956150,28958716,28958990,28963704	28951398,28952204,28956058,28956337,28958861,28959100,28965698	1.000000
transverse_colon_female_adult_53_years	chr2	199419415	199419437	199419415	-	RAMPAGE_only	5	6	17	0.820453	3.577820	chr2	199419334	199419454	DNA|DNA|MER135	-	chr2	199408632	199456088	STRG.21544.11	-	199408632,199423581,199455868	199423504,199433514,199456088	0.941176
transverse_colon_female_adult_53_years	chr8	144106344	144106371	144106344	+	High_confidence	3	3	13	0.627405	2.855389	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.692308
transverse_colon_female_adult_53_years	chr19	56106475	56106494	56106493	-	High_confidence	4	6	20	0.965239	4.037401	chr19	56106098	56106444	LINE|L1|L1MB8	-	chr19	56087365	56107038	STRG.117687.2	-	56087365,56103138,56106330	56089092,56103227,56107038	0.550000
transverse_colon_female_adult_53_years	chr7	117536162	117536163	117536162	+	RAMPAGE_only	15	15	19	0.916977	4.037401	chr7	117536168	117536403	SINE|MIR|MIRb	+	chr7	117480094	117667108	CFTR|ENST00000649781.1	+	117480094,117504252,117509033,117530898,117534275,117535247,117536547,117540099,117542015,117559463,117587738,117590352,117591933,117594929,117602825,117603531,117606673,117610518,117611580,117614612,117627521,117642437,117652841,117664687,117665458,117666907	117480147,117504363,117509142,117531114,117534365,117535411,117536673,117540346,117542108,117559655,117587833,117590439,117592657,117595058,117602863,117603782,117606753,117610669,117611808,117614713,117627770,117642593,117652931,117664860,117665564,117667108	0.578947
transverse_colon_female_adult_53_years	chr9	128684459	128684493	128684459	-	High_confidence	17	17	101	4.874455	6.119535	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128682634	128684476	STRG.73945.2	-	128682634	128684476	0.910891
transverse_colon_female_adult_53_years	chr19	49867874	49867885	49867884	-	High_confidence	8	8	18	0.868715	3.852169	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49861203	49867886	PNKP|ENST00000322344.7	-	49861203,49861448,49861607,49861771,49862043,49862184,49862370,49862537,49862689,49863688,49863963,49864178,49864323,49865126,49866398,49867053,49867468	49861365,49861510,49861695,49861881,49862105,49862281,49862463,49862608,49862738,49863760,49864071,49864236,49864403,49865426,49866445,49867217,49867886	0.777778
transverse_colon_female_adult_53_years	chr12	9065161	9065174	9065173	+	High_confidence	2	2	9	0.434357	3.000000	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.666667
transverse_colon_female_adult_53_years	chr3	108322908	108322982	108322908	+	RAMPAGE_only	3	3	23	1.110024	2.824242	chr3	108322899	108323108	LINE|L1|HAL1	-	chr3	108299421	108353653	STRG.27914.10	+	108299421,108353426	108351877,108353653	0.956522
transverse_colon_female_adult_53_years	chr21	42524962	42524979	42524977	+	RAMPAGE_only	4	7	14	0.675667	3.392747	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42513776	42581440	STRG.122301.4	+	42513776,42514869,42518276,42525775,42530656,42542403,42543435,42547102,42554061,42558957,42562077,42563814,42564707,42565826,42566984,42568359,42574817,42579735,42580344	42514717,42514935,42518510,42530630,42539647,42542480,42543602,42547140,42554142,42559089,42562168,42563877,42564793,42565875,42567058,42568438,42574915,42579800,42581440	0.642857
transverse_colon_female_adult_53_years	chr7	107580245	107580267	107580245	+	High_confidence	528	533	2516	121.427024	7.413660	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.901431
transverse_colon_female_adult_53_years	chr9	98110116	98110123	98110116	-	RAMPAGE_only	4	4	11	0.530881	2.732159	chr9	98110049	98110173	SINE|MIR|MIR3	-	chr9	98094866	98119136	TRIM14|ENST00000478401.1	-	98094866,98099930,98109888,98110068,98118981	98095029,98100164,98109984,98110234,98119136	0.818182
transverse_colon_female_adult_53_years	chr1	17513356	17513416	17513372	+	RAMPAGE_only	60	61	229	11.051983	6.549573	chr1	17513264	17513548	DNA|TcMar-Mariner|MARNA	-	chr1	17519563	17638003	STRG.744.4	+	17519563,17580552,17587459,17588445,17602126,17603507,17607801,17616093,17619338,17621863,17622995,17624386,17625955,17627329,17632320,17634547,17634834,17637887	17520458,17580632,17587645,17588479,17602218,17603591,17607977,17616202,17619445,17621941,17623175,17624503,17626048,17627503,17632466,17634562,17635016,17638003	0.519651
transverse_colon_female_adult_53_years	chr1	83182365	83182379	83182365	-	High_confidence	3	3	7	0.337834	2.584963	chr1	83182174	83188201	LINE|L1|L1PA2	+	chr1	83180863	83182593	STRG.4500.2	-	83180863	83182593	0.571429
transverse_colon_female_adult_53_years	chr8	16186271	16186273	16186271	-	High_confidence	5	9	10	0.482619	2.947703	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.800000
transverse_colon_female_adult_53_years	chr1	159937218	159937219	159937218	-	RAMPAGE_only	5	5	7	0.337834	2.584963	chr1	159937165	159937358	SINE|MIR|MIRc	+	chr1	159927038	159945593	IGSF9|ENST00000476102.1	-	159927038,159927759,159928157,159929350,159929637,159929890,159930188,159930691,159931452,159931811,159932511,159934189,159934424,159934680,159936398,159936753,159937685,159942962,159943396,159945572	159927526,159927887,159929018,159929393,159929785,159929975,159930439,159930867,159931603,159931928,159932652,159934332,159934570,159934822,159936516,159936908,159937838,159943151,159943628,159945593	0.571429
transverse_colon_female_adult_53_years	chr19	41673750	41674651	41673816	-	RAMPAGE_only	59	74	1602	77.315617	7.830533	chr19	41673574	41674158	LTR|ERV1|MER65-int	-	chr19	41673306	41688277	CEACAM7|NM_006890.4	-	41673306,41677375,41683784,41686858,41688101	41674759,41677503,41684063,41687221,41688277	0.998127
transverse_colon_female_adult_53_years	chr5	78517603	78517610	78517609	-	RAMPAGE_only	17	22	33	1.592644	4.413910	chr5	78517440	78517802	LTR|ERVL-MaLR|THE1B	-	chr5	78510038	78522637	STRG.41572.9	-	78510038,78517523	78510398,78522637	0.727273
transverse_colon_female_adult_53_years	chr1	71147870	71147871	71147870	+	RAMPAGE_only	5	7	8	0.386095	2.521641	chr1	71147669	71148038	LTR|ERVL-MaLR|THE1D	+	chr1	71081323	71237723	ZRANB2-AS2|NR_046217.1	+	71081323,71091663,71223056,71237129	71081413,71091704,71223114,71237723	0.625000
transverse_colon_female_adult_53_years	chr12	4720419	4720471	4720429	+	High_confidence	41	41	101	4.874455	5.360819	chr12	4720007	4720593	LTR|ERVK|LTR14C	-	chr12	4720340	4772726	GALNT8|ENST00000252318.6	+	4720340,4726531,4739162,4744516,4745428,4746143,4760957,4763252,4763951,4765378,4772444	4720888,4726829,4739329,4744700,4745626,4746258,4761143,4763390,4764047,4765546,4772726	0.970297
transverse_colon_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	13	13	13	0.627405	2.565448	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
transverse_colon_female_adult_53_years	chr1	26358929	26358934	26358929	-	High_confidence	6	7	18	0.868715	3.905765	chr1	26358817	26358907	SINE|MIR|MIR3	-	chr1	26358400	26358908	STRG.1106.1	-	26358400	26358908	0.666667
transverse_colon_female_adult_53_years	chr16	20805903	20805907	20805903	-	High_confidence	2	2	7	0.337834	2.584963	chr16	20805458	20806036	LTR|ERV1|LTR10C	+	chr16	20803424	20806105	ERI2|ENST00000562277.5	-	20803424,20803602,20805714	20803511,20803670,20806105	0.857143
transverse_colon_female_adult_53_years	chr1	227142954	227143001	227142956	-	RAMPAGE_only	9	12	22	1.061763	3.970573	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.772727
transverse_colon_female_adult_53_years	chr15	92914950	92914974	92914950	+	High_confidence	17	17	64	3.088764	5.532835	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.812500
transverse_colon_female_adult_53_years	chr1	84273124	84273125	84273124	+	RAMPAGE_only	4	6	7	0.337834	2.584963	chr1	84272747	84274716	LINE|L1|L1MC1	-	chr1	84274997	84285375	STRG.4798.1	+	84274997,84284775	84275075,84285375	0.714286
transverse_colon_female_adult_53_years	chr11	114643433	114644377	114644373	-	RAMPAGE_only	23	29	795	38.368237	7.752535	chr11	114642325	114644484	LINE|L1|L1PA7	-	chr11	114640385	114651608	STRG.84086.18	-	114640385,114648240,114651162	114644382,114648469,114651608	0.998742
transverse_colon_female_adult_53_years	chr21	43353003	43353022	43353021	+	High_confidence	14	14	24	1.158286	4.334963	chr21	43352841	43353107	LTR|ERV1|MER57F	-	chr21	43353038	43354976	STRG.122325.1	+	43353038	43354976	1.000000
transverse_colon_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	793	909	2301	111.050709	6.598482	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.913081
transverse_colon_female_adult_53_years	chr11	3477049	3477073	3477055	-	RAMPAGE_only	25	27	147	7.094504	6.075641	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3475150	3478364	STRG.79449.2	-	3475150	3478364	1.000000
transverse_colon_female_adult_53_years	chr14	55352810	55352886	55352824	+	RAMPAGE_only	4	4	28	1.351334	4.056021	chr14	55352765	55352941	DNA|TcMar-Mariner|MARNA	+	chr14	55271302	55353609	FBXO34|ENST00000313833.4	+	55271302,55350380	55271537,55353609	0.892857
transverse_colon_female_adult_53_years	chr19	7642274	7642315	7642274	+	High_confidence	5	5	22	1.061763	3.689704	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642780	7647873	STXBP2|ENST00000600702.5	+	7642780,7642982,7643164,7644613,7645196,7646248,7647161,7647724	7642823,7643048,7643245,7644752,7645306,7646344,7647247,7647873	0.863636
transverse_colon_female_adult_53_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	15	17	40	1.930477	4.784184	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.800000
transverse_colon_female_adult_53_years	chr14	68167022	68167062	68167022	-	RAMPAGE_only	9	9	52	2.509621	5.392747	chr14	68166677	68167265	LINE|L2|L2	+	chr14	68125003	68130196	AL133370.1|ENST00000554679.1	-	68125003,68130065	68125409,68130196	0.596154
transverse_colon_female_adult_53_years	chr6	35674763	35674900	35674763	-	RAMPAGE_only	4	4	41	1.978739	4.286426	chr6	35674600	35674775	SINE|MIR|MIR	-	chr6	35573589	35688915	STRG.48887.2	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35646162,35661967	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35642843,35658655,35688915	1.000000
transverse_colon_female_adult_53_years	chr5	133089620	133089693	133089677	+	RAMPAGE_only	7	9	25	1.206548	4.483856	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
transverse_colon_female_adult_53_years	chr19	55069739	55069774	55069773	-	High_confidence	6	7	12	0.579143	2.913977	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55063900	55069531	RDH13|ENST00000587373.1	-	55063900,55069321	55064412,55069531	0.666667
transverse_colon_female_adult_53_years	chr7	158863386	158863401	158863400	+	RAMPAGE_only	6	7	21	1.013501	4.037401	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.761905
transverse_colon_female_adult_53_years	chr21	39657322	39657337	39657336	+	High_confidence	84	88	276	13.320294	6.925248	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657326	39662889	B3GALT5|ENST00000380618.5	+	39657326,39659752,39660559	39657599,39659912,39662889	0.789855
transverse_colon_female_adult_53_years	chr12	127060613	127060614	127060613	+	High_confidence	300	357	379	18.291273	6.389044	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060475	127146926	STRG.91144.1	+	127060475,127119553,127145711	127061334,127119678,127146926	0.947230
transverse_colon_female_adult_53_years	chr15	44662617	44662618	44662617	-	RAMPAGE_only	5	5	7	0.337834	2.807355	chr15	44662388	44662674	SINE|Alu|AluJb	+	chr15	44563120	44663647	SPG11|ENST00000427534.6	-	44563120,44567423,44569397,44570524,44572682,44573546,44574901,44583813,44585635,44589251,44592330,44595258,44596082,44596783,44598264,44598630,44600466,44606024,44608443,44610839,44613429,44615362,44620189,44621758,44622219,44622727,44626330,44628668,44629232,44633504,44648865,44651490,44652128,44657094,44659078,44660431,44663390	44563301,44567592,44569505,44570658,44572820,44573745,44575041,44584558,44585850,44589414,44592438,44595459,44596355,44596943,44598373,44598836,44600632,44606091,44608605,44610985,44613536,44615566,44620403,44621934,44622347,44622799,44626507,44628844,44629388,44633637,44649011,44651939,44652266,44657296,44659303,44660616,44663647	0.571429
transverse_colon_female_adult_53_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	7	7	7	0.337834	2.807355	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
transverse_colon_female_adult_53_years	chr5	122475806	122475825	122475806	+	High_confidence	351	396	537	25.916658	6.330933	chr5	122475794	122475946	LTR|ERV1|HERVH-int	-	chr5	122475816	122476387	STRG.44037.1	+	122475816	122476387	0.947858
transverse_colon_female_adult_53_years	chr19	45524115	45524142	45524136	+	RAMPAGE_only	4	4	17	0.820453	3.690117	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.588235
transverse_colon_female_adult_53_years	chrX	19349956	19350023	19349983	+	RAMPAGE_only	3	3	22	1.061763	3.984184	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19343967	19353164	STRG.125405.8	+	19343967,19346509,19349311,19349936,19351280	19344094,19346623,19349371,19350110,19353164	0.545455
transverse_colon_female_adult_53_years	chr7	7566514	7566534	7566514	-	High_confidence	14	17	62	2.992240	5.631616	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.532258
transverse_colon_female_adult_53_years	chrX	100593436	100593437	100593436	+	High_confidence	9	9	13	0.627405	3.251629	chrX	100593420	100593562	LINE|CR1|L3	+	chrX	100594343	100599127	STRG.127592.1	+	100594343,100597503,100599015	100594362,100597657,100599127	0.538462
transverse_colon_female_adult_53_years	chr5	117455061	117455102	117455061	+	High_confidence	23	23	62	2.992240	5.446971	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.629032
transverse_colon_female_adult_53_years	chr4	81217882	81217883	81217882	-	RAMPAGE_only	9	11	13	0.627405	2.661226	chr4	81217757	81218127	LTR|ERVL-MaLR|MLT1L	-	chr4	81087369	81215117	PRKG2|NM_006259.2	-	81087369,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81167160,81169662,81171690,81174792,81204586,81214935	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81167224,81169768,81171804,81174959,81205060,81215117	1.000000
transverse_colon_female_adult_53_years	chr5	157053009	157053037	157053025	-	High_confidence	89	90	276	13.320294	6.359234	chr5	157052925	157053104	SINE|Alu|AluJr	-	chr5	157028225	157053069	STRG.46063.4	-	157028225,157037246,157042626,157049037,157052360,157052947	157029841,157037361,157042682,157049145,157052654,157053069	0.956522
transverse_colon_female_adult_53_years	chr10	45000503	45000515	45000503	+	High_confidence	7	7	14	0.675667	3.546594	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.928571
transverse_colon_female_adult_53_years	chr7	76829007	76829026	76829007	-	High_confidence	4	4	18	0.868715	3.852169	chr7	76828805	76829163	LTR|ERVL-MaLR|THE1B	-	chr7	76828368	76828789	STRG.58904.1	-	76828368	76828789	0.500000
transverse_colon_female_adult_53_years	chr3	195688578	195688603	195688578	+	High_confidence	2	2	9	0.434357	3.000000	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688520	195708807	MUC20-OT1|ENST00000630417.2	+	195688520,195689338,195699029,195708133,195708746	195688797,195689438,195699207,195708435,195708807	0.666667
transverse_colon_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	57	57	57	2.750930	5.433681	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.666667
transverse_colon_female_adult_53_years	chr1	59295909	59295930	59295929	+	High_confidence	7	11	32	1.544382	4.750000	chr1	59295878	59295975	SINE|MIR|MIR3	+	chr1	59295936	59346369	STRG.3412.8	+	59295936,59296370,59321535,59339957,59346246	59296038,59296460,59321750,59340069,59346369	0.625000
transverse_colon_female_adult_53_years	chr19	38289145	38289170	38289169	+	High_confidence	3	3	21	1.013501	3.921928	chr19	38289206	38289513	SINE|Alu|AluSc8	+	chr19	38288405	38292468	SPINT2|ENST00000585357.1	+	38288405,38290536	38290280,38292468	0.952381
transverse_colon_female_adult_53_years	chr11	114639226	114639282	114639226	-	RAMPAGE_only	6	6	18	0.868715	3.807764	chr11	114633465	114639620	LINE|L1|L1PA3	-	chr11	114633589	114651608	STRG.84086.19	-	114633589,114648240,114651162	114639619,114648345,114651608	0.944444
transverse_colon_female_adult_53_years	chr1	116383610	116383625	116383624	+	High_confidence	2	3	6	0.289572	2.584963	chr1	116383406	116383629	SINE|MIR|MIR	-	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.500000
transverse_colon_female_adult_53_years	chr17	48095948	48095995	48095994	-	RAMPAGE_only	17	17	31	1.496120	4.438067	chr17	48095883	48096178	SINE|Alu|AluSx	-	chr17	48075088	48100582	CBX1|ENST00000444685.1	-	48075088,48076000,48076864,48095714,48100530	48075100,48076178,48077041,48095839,48100582	0.903226
transverse_colon_female_adult_53_years	chr21	39657249	39657260	39657249	+	High_confidence	4	4	8	0.386095	2.807355	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657319	39662889	B3GALT5|NM_033171.2	+	39657319,39657784,39659752,39660559	39657599,39657893,39659912,39662889	0.875000
transverse_colon_female_adult_53_years	chr11	85811000	85811012	85811011	-	High_confidence	3	3	8	0.386095	2.807355	chr11	85810837	85810962	SINE|MIR|MIR3	-	chr11	85694274	85811129	SYTL2|ENST00000316356.8	-	85694274,85696182,85697978,85700514,85704857,85707428,85709330,85711112,85714412,85718789,85720857,85727895,85733938,85736500,85737574,85745636,85748271,85757624,85810953	85695340,85696388,85698078,85700593,85705028,85707531,85709500,85711232,85714507,85718843,85720959,85727967,85734742,85736615,85737656,85745772,85748423,85758114,85811129	0.875000
transverse_colon_female_adult_53_years	chr1	6639923	6639948	6639923	-	RAMPAGE_only	3	3	9	0.434357	2.750000	chr1	6639724	6639885	SINE|MIR|MIR	-	chr1	6634167	6645057	DNAJC11|ENST00000465508.5	-	6634167,6636116,6637197,6637446,6639901,6644557,6645040	6635700,6636246,6637340,6638364,6640057,6644674,6645057	0.888889
transverse_colon_female_adult_53_years	chr7	154928503	154928506	154928503	+	High_confidence	13	13	20	0.965239	3.787144	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.950000
transverse_colon_female_adult_53_years	chr1	116984535	116984536	116984535	+	RAMPAGE_only	23	23	29	1.399596	4.378783	chr1	116984390	116984612	SINE|MIR|MIR	+	chr1	116910056	116990358	PTGFRN|ENST00000393203.2	+	116910056,116941714,116944678,116949191,116961242,116966910,116974215,116984679,116986800	116910252,116942083,116945092,116949572,116961668,116967330,116974323,116984985,116990358	0.965517
transverse_colon_female_adult_53_years	chr19	44662279	44662280	44662279	+	RAMPAGE_only	5	7	8	0.386095	2.521641	chr19	44662259	44662524	SINE|Alu|AluJb	-	chr19	44657215	44663583	STRG.116940.8	+	44657215,44658741,44661739	44657910,44661323,44663583	0.875000
transverse_colon_female_adult_53_years	chr5	117455240	117455262	117455261	+	High_confidence	3	3	6	0.289572	2.584963	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.500000
transverse_colon_female_adult_53_years	chr1	9743889	9743908	9743904	-	RAMPAGE_only	2	2	9	0.434357	3.000000	chr1	9743549	9743856	SINE|Alu|AluJo	-	chr1	9729027	9751581	CLSTN1|ENST00000435891.5	-	9729027,9731205,9731760,9733400,9733971,9734947,9735466,9735884,9741093,9743883,9744394,9749460,9749763,9751472	9730705,9731390,9731896,9733546,9734142,9735174,9735615,9736042,9741256,9744005,9744643,9749646,9749913,9751581	0.888889
transverse_colon_female_adult_53_years	chr10	72355105	72355146	72355145	-	High_confidence	9	9	26	1.254810	4.220176	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.884615
transverse_colon_female_adult_53_years	chr4	23723067	23723102	23723101	+	RAMPAGE_only	5	5	10	0.482619	3.121928	chr4	23722872	23723321	LTR|ERV1|LTR7	-	chr4	23560922	23768652	AC093607.1|ENST00000514290.1	+	23560922,23768318	23561039,23768652	0.500000
transverse_colon_female_adult_53_years	chr2	227164620	227164621	227164620	+	High_confidence	6	6	9	0.434357	2.947703	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.555556
transverse_colon_female_adult_53_years	chr6	16493280	16493303	16493291	-	RAMPAGE_only	18	18	49	2.364835	5.235902	chr6	16493229	16493323	LINE|L2|L2c	+	chr6	16485134	16761460	ATXN1|ENST00000473388.6	-	16485134,16522626,16585779,16657775,16753232,16761297	16486109,16522688,16585907,16657901,16753347,16761460	0.755102
transverse_colon_female_adult_53_years	chr17	4143199	4143218	4143199	+	High_confidence	71	72	168	8.108005	5.555992	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.988095
transverse_colon_female_adult_53_years	chr2	174410286	174410372	174410371	+	High_confidence	15	15	86	4.150526	5.408944	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.662791
transverse_colon_female_adult_53_years	chr19	754589	754606	754589	+	RAMPAGE_only	3	3	11	0.530881	3.121928	chr19	754477	754640	SINE|Alu|AluSx1	+	chr19	751125	764318	MISP|ENST00000215582.7	+	751125,756889,759908,761624,763500	751171,758726,760039,761663,764318	0.727273
transverse_colon_female_adult_53_years	chr9	4726820	4726821	4726820	-	RAMPAGE_only	5	5	8	0.386095	2.750000	chr9	4725911	4728263	DNA|TcMar-Tigger|Tigger1	-	chr9	4712044	4741227	STRG.69042.1	-	4712044,4718418,4719134,4722505,4726082,4740936	4713096,4718537,4719307,4722625,4727924,4741227	1.000000
transverse_colon_female_adult_53_years	chr12	93019680	93019703	93019680	-	High_confidence	33	34	95	4.584884	5.712130	chr12	93019136	93019733	DNA|TcMar-Tigger|Tigger12c	-	chr12	93019113	93020026	STRG.89634.1	-	93019113	93020026	0.894737
transverse_colon_female_adult_53_years	chr1	84274984	84274999	84274998	+	High_confidence	77	77	152	7.335814	5.686352	chr1	84274743	84275154	LTR|ERVL-MaLR|MSTD	+	chr1	84274997	84285375	STRG.4798.1	+	84274997,84284775	84275075,84285375	0.888158
transverse_colon_female_adult_53_years	chr11	114638157	114638468	114638377	-	RAMPAGE_only	36	36	238	11.486340	6.216396	chr11	114633465	114639620	LINE|L1|L1PA3	-	chr11	114633589	114651608	STRG.84086.19	-	114633589,114648240,114651162	114639619,114648345,114651608	0.983193
transverse_colon_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	551	670	1189	57.383439	5.855775	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.985702
transverse_colon_female_adult_53_years	chr5	177431710	177431715	177431710	+	High_confidence	4	4	9	0.434357	2.500000	chr5	177431745	177431876	SINE|MIR|MIRb	+	chr5	177431710	177442064	GRK6|ENST00000515666.5	+	177431710,177432232,177432705,177433146,177433346,177433535,177433913,177434901,177435031,177436072,177436392,177440699,177440918,177441736	177432107,177432310,177432806,177433239,177433410,177433676,177434104,177434939,177435121,177436281,177436530,177440837,177441053,177442064	0.777778
transverse_colon_female_adult_53_years	chr2	173532853	173532864	173532853	+	High_confidence	5	5	13	0.627405	3.251629	chr2	173527289	173533317	LINE|L1|L1PA3	-	chr2	173532705	173534270	STRG.19978.1	+	173532705	173534270	0.846154
transverse_colon_female_adult_53_years	chr11	114537004	114537005	114537004	-	RAMPAGE_only	7	10	11	0.530881	3.095795	chr11	114533301	114539446	LINE|L1|L1PA4	+	chr11	114521715	114551201	STRG.84086.12	-	114521715,114522878,114527839,114528795,114531331	114522503,114523091,114527901,114530908,114551201	1.000000
transverse_colon_female_adult_53_years	chr14	95516121	95516123	95516121	+	High_confidence	3	9	9	0.434357	2.500000	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.666667
transverse_colon_female_adult_53_years	chr7	107776849	107776876	107776849	-	RAMPAGE_only	3	3	13	0.627405	3.392747	chr7	107776842	107776901	LINE|L2|L2c	+	chr7	107765471	107803207	SLC26A3|ENST00000340010.9	-	107765471,107767578,107767765,107772053,107773919,107774776,107776451,107776636,107778174,107779667,107782796,107782979,107783204,107786826,107787356,107789523,107791047,107791829,107793741,107794378,107803110	107765878,107767644,107767908,107772108,107774153,107774872,107776544,107776706,107778281,107779763,107782874,107783093,107783352,107786909,107787509,107789688,107791235,107791940,107793881,107794597,107803207	0.923077
transverse_colon_female_adult_53_years	chr11	24932587	24932653	24932587	+	High_confidence	28	28	92	4.440098	5.633169	chr11	24931536	24933353	LINE|L1|L1PB1	-	chr11	24932586	25082706	STRG.80557.1	+	24932586,24976590,24983125,25050037,25077328,25078553	24932688,24976665,24983293,25050130,25077406,25082706	0.804348
transverse_colon_female_adult_53_years	chr15	45441849	45441878	45441877	-	High_confidence	255	266	432	20.849155	6.906942	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45430651	45441808	AC025580.1|ENST00000559553.1	-	45430651,45433612,45441780	45430814,45434150,45441808	0.726852
transverse_colon_female_adult_53_years	chr17	16981401	16981405	16981404	-	High_confidence	5	5	10	0.482619	2.646439	chr17	16980989	16981426	LINE|L2|L2a	+	chr17	16979976	16981441	STRG.108911.2	-	16979976	16981441	1.000000
transverse_colon_female_adult_53_years	chr1	84968906	84968951	84968935	-	RAMPAGE_only	14	18	64	3.088764	5.425705	chr1	84968788	84969287	LTR|ERVL|MER21A	+	chr1	84925582	84996940	MCOLN2|ENST00000370608.7	-	84925582,84929557,84931361,84937754,84937980,84939552,84940878,84947032,84952242,84952445,84956430,84958528,84965548,84996795	84926721,84929679,84931568,84937877,84938082,84939702,84940991,84947132,84952339,84952530,84956584,84958702,84965708,84996940	0.703125
transverse_colon_female_adult_53_years	chr4	168317998	168318043	168317998	-	High_confidence	15	19	59	2.847454	5.204677	chr4	168317795	168318076	LTR|ERVL-MaLR|MLT1E1A	+	chr4	168262706	168318775	STRG.38791.2	-	168262706,168267581,168267840,168268853,168272042,168273278,168273933,168275344,168276014,168280334,168283445,168284819,168285392,168287047,168288173,168291747,168293786,168302299,168306378,168308005,168310997,168311255,168317921	168262787,168267691,168267983,168268969,168272138,168273398,168274083,168275503,168276181,168280590,168283606,168284935,168285498,168287203,168288315,168291906,168293945,168302416,168306720,168308195,168311067,168311365,168318775	0.881356
transverse_colon_female_adult_53_years	chrX	11351636	11351637	11351636	-	RAMPAGE_only	4	4	7	0.337834	2.807355	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.571429
transverse_colon_female_adult_53_years	chr3	69237176	69237186	69237185	-	RAMPAGE_only	15	15	46	2.220049	5.323068	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.543478
transverse_colon_female_adult_53_years	chr4	93893973	93894014	93894013	-	High_confidence	30	37	93	4.488360	5.677450	chr4	93893568	93894080	LTR|ERVL-MaLR|MLT1H1	-	chr4	93891662	93894006	STRG.35824.2	-	93891662,93893685	93892505,93894006	0.903226
transverse_colon_female_adult_53_years	chr20	44355223	44355242	44355234	-	High_confidence	44	48	193	9.314553	5.816769	chr20	44355193	44355255	SINE|MIR|MIR	+	chr20	44344697	44355185	STRG.120016.2	-	44344697,44351867,44355018	44350856,44351950,44355185	0.989637
transverse_colon_female_adult_53_years	chr8	97931083	97931089	97931083	+	RAMPAGE_only	2	2	7	0.337834	2.584963	chr8	97931029	97931087	LINE|RTE-BovB|MamRTE1	+	chr8	97888074	98027678	STRG.66826.4	+	97888074,97930952,97941776,97961407,97978885,97994479,98003660,98004536,98007478,98016539,98017993,98021204,98027415	97888242,97931522,97941899,97961530,97979008,97994602,98003783,98007227,98007601,98016662,98018116,98021327,98027678	0.857143
transverse_colon_female_adult_53_years	chr15	71747851	71747852	71747851	+	RAMPAGE_only	8	9	10	0.482619	3.321928	chr15	71747409	71747892	LTR|ERV1|LTR44	-	chr15	71728445	71783383	STRG.102144.4	+	71728445,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71771063,71777231	71728724,71733049,71738007,71745235,71747042,71748594,71758075,71765199,71771208,71783383	0.700000
transverse_colon_female_adult_53_years	chr17	31762436	31762437	31762436	+	High_confidence	153	154	163	7.866695	6.097415	chr17	31762038	31762862	LTR|ERV1|LTR12	+	chr17	31762439	31769048	AC007923.1|ENST00000577970.1	+	31762439,31769006	31762902,31769048	0.840491
transverse_colon_female_adult_53_years	chr5	154038408	154038409	154038408	-	High_confidence	18	18	26	1.254810	4.286790	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.500000
transverse_colon_female_adult_53_years	chr20	36624284	36624306	36624305	-	RAMPAGE_only	5	5	9	0.434357	2.750000	chr20	36624215	36624341	LINE|L2|L2a	+	chr20	36612518	36645881	SLA2|ENST00000360672.2	-	36612518,36614304,36615224,36632594,36633542,36634489,36641244,36645836	36613986,36614387,36615374,36632698,36633629,36634589,36641378,36645881	0.555556
transverse_colon_female_adult_53_years	chr6	30136133	30136140	30136139	+	High_confidence	115	121	217	10.472840	6.503593	chr6	30136119	30136206	LINE|CR1|L3b	+	chr6	30136123	30151461	STRG.48556.4	+	30136123,30136411,30145993,30146984,30147519	30136189,30137381,30146089,30147209,30151461	0.838710
transverse_colon_female_adult_53_years	chr11	114648526	114648559	114648526	-	RAMPAGE_only	2	2	15	0.723929	3.521641	chr11	114648239	114648618	LTR|ERVL|MLT2B4	-	chr11	114640385	114651608	STRG.84086.26	-	114640385,114651162	114648469,114651608	0.933333
transverse_colon_female_adult_53_years	chr2	241372946	241372947	241372946	+	RAMPAGE_only	7	7	10	0.482619	2.725481	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241356296	241466030	FARP2|ENST00000373287.8	+	241356296,241373083,241403827,241404798,241407536,241411032,241413306,241417961,241431678,241434157,241434961,241436480,241441303,241456746,241462522,241463334,241463898,241465459	241356388,241373290,241403932,241404841,241407615,241411130,241413421,241418109,241431774,241434321,241435030,241436538,241441556,241456922,241462612,241463468,241463980,241466030	0.900000
transverse_colon_female_adult_53_years	chr19	46350849	46350850	46350849	+	RAMPAGE_only	5	7	8	0.386095	2.807355	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.875000
transverse_colon_female_adult_53_years	chr9	110678223	110678226	110678223	+	RAMPAGE_only	5	5	11	0.530881	3.095795	chr9	110678111	110678442	SINE|Alu|AluJo	-	chr9	110668858	110800998	MUSK|ENST00000189978.10	+	110668858,110682673,110687116,110695402,110697324,110728687,110734250,110747640,110762201,110775787,110784814,110785526,110787689,110800305	110668983,110682800,110687268,110695530,110697466,110728717,110734375,110747800,110762208,110775963,110785016,110785718,110787838,110800998	1.000000
transverse_colon_female_adult_53_years	chr2	201115946	201116014	201116013	+	High_confidence	3	3	14	0.675667	3.664498	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	1.000000
transverse_colon_female_adult_53_years	chr14	73463624	73463625	73463624	-	High_confidence	7	7	10	0.482619	2.503258	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73409975	73463642	AC005280.3|ENST00000553415.5	-	73409975,73459033,73462528,73463474	73410068,73459305,73462689,73463642	0.500000
transverse_colon_female_adult_53_years	chr1	149229339	149229368	149229367	-	RAMPAGE_only	5	6	15	0.723929	3.378783	chr1	149229335	149229457	SINE|MIR|MIR3	+	chr1	149197559	149285810	STRG.6990.2	-	149197559,149198360,149201013,149240376,149261639,149266968,149285453	149198171,149198484,149201090,149240487,149261791,149267024,149285810	0.866667
transverse_colon_female_adult_53_years	chr1	247171424	247171425	247171424	-	High_confidence	23	25	29	1.399596	4.521641	chr1	247171309	247171510	LTR|ERV1|MER57E3	+	chr1	247156419	247171967	ZNF124|ENST00000543802.2	-	247156419,247159005,247159686,247171847	247157403,247159066,247159813,247171967	0.793103
transverse_colon_female_adult_53_years	chrX	66172288	66172318	66172288	+	RAMPAGE_only	4	5	11	0.530881	3.027169	chrX	66172197	66172316	LINE|CR1|L3b	-	chrX	66170545	66208246	HEPH|ENST00000425114.1	+	66170545,66172354,66173588,66188358,66189683,66192129,66193501,66195097,66197811,66198877,66200539,66203363,66207194,66208114	66170737,66172599,66173801,66188541,66189938,66192298,66193638,66195229,66197894,66199028,66200752,66203577,66207334,66208246	0.636364
transverse_colon_female_adult_53_years	chr3	193824678	193824698	193824678	+	RAMPAGE_only	8	8	27	1.303072	4.004344	chr3	193824075	193824978	LINE|L1|L1ME2	-	chr3	193826156	193826669	STRG.31609.1	+	193826156	193826669	0.592593
transverse_colon_female_adult_53_years	chr9	74848113	74848181	74848180	-	RAMPAGE_only	27	28	102	4.922717	5.664641	chr9	74847872	74848586	DNA|TcMar-Tigger|MER44C	-	chr9	74723934	74849250	STRG.71462.8	-	74723934,74728238,74732684,74738406,74739366,74739722,74742560,74747888,74752276,74755352,74761695,74761998,74771702,74775882,74782361,74782678,74785873,74792623,74796740,74800253,74801897,74812298,74816668,74816891,74820303,74821668,74827777,74833997,74840023,74842165,74847889	74724746,74728345,74732736,74738612,74739449,74740009,74744145,74750722,74752368,74755473,74761808,74763134,74771835,74776076,74782476,74782853,74786125,74792770,74796893,74800482,74810868,74812433,74816769,74816964,74820427,74821837,74827949,74834122,74840237,74842343,74849250	0.725490
transverse_colon_female_adult_53_years	chr4	121074204	121074242	121074230	+	High_confidence	80	85	617	29.777613	6.468491	chr4	121073822	121075070	LINE|L2|L2c	-	chr4	121074203	121075221	STRG.37286.1	+	121074203	121075221	0.959481
transverse_colon_female_adult_53_years	chr14	106844863	106844893	106844884	+	High_confidence	5	5	25	1.206548	3.969002	chr14	106836775	106845293	LTR|ERV1|HERV3-int	-	chr14	106844891	106866835	STRG.98892.2	+	106844891,106864196	106845913,106866835	0.880000
transverse_colon_female_adult_53_years	chr11	134467260	134467265	134467264	+	RAMPAGE_only	217	218	492	23.744871	6.556018	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134466185	134487915	STRG.84916.5	+	134466185,134467864,134469486,134482626,134487551	134467615,134467987,134480911,134487500,134487915	0.957317
transverse_colon_female_adult_53_years	chr1	110871198	110871212	110871200	+	High_confidence	16	30	76	3.667907	5.530201	chr1	110870731	110871665	LINE|L2|L2b	-	chr1	110871198	110899936	CD53|NM_001040033.1	+	110871198,110873155,110891391,110892344,110894326,110894959,110896652,110897808,110899123	110871259,110873248,110891471,110892533,110894401,110895055,110896733,110897892,110899936	0.671053
transverse_colon_female_adult_53_years	chr3	180870518	180870522	180870518	-	High_confidence	3	4	9	0.434357	3.169925	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180707588	180870178	LOC101928882|NR_109986.1	-	180707588,180711192,180711309,180725514,180733478,180734486,180737492,180747879,180748245,180751347,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180733682,180734606,180737814,180748043,180748319,180751410,180782124,180810470,180847624,180870178	0.555556
transverse_colon_female_adult_53_years	chr4	69723284	69723396	69723284	-	RAMPAGE_only	8	8	38	1.833953	4.668980	chr4	69723014	69726028	LINE|L1|L1PA5	+	chr4	69721161	69760712	SULT1B1|ENST00000310613.7	-	69721161,69730500,69733412,69734137,69749720,69754669,69755069,69760458	69727200,69730681,69733507,69734264,69749818,69754798,69755261,69760712	1.000000
transverse_colon_female_adult_53_years	chr8	85187677	85187678	85187677	+	High_confidence	4	4	6	0.289572	2.584963	chr8	85186969	85188500	LINE|L1|L1M1	-	chr8	85187674	85214518	E2F5|NM_001083589.1	+	85187674,85202146,85203093,85206176,85207424,85209141,85212156,85213752	85187796,85202256,85203255,85206220,85207489,85209409,85212204,85214518	0.833333
transverse_colon_female_adult_53_years	chr14	91279246	91279279	91279246	-	RAMPAGE_only	4	4	8	0.386095	2.750000	chr14	91278889	91279197	SINE|Alu|AluJb	-	chr14	91273468	91283623	CCDC88C|ENST00000334448.5	-	91273468,91277921,91279237,91281161,91281456,91283328	91273653,91278211,91279306,91281308,91281525,91283623	1.000000
transverse_colon_female_adult_53_years	chr16	74485799	74485814	74485805	-	RAMPAGE_only	3	3	9	0.434357	3.000000	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74467758	74504061	STRG.107383.6	-	74467758,74469984,74471172,74472348,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530	74469063,74470073,74471286,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74504061	0.888889
transverse_colon_female_adult_53_years	chr9	77945016	77945044	77945043	-	RAMPAGE_only	5	6	17	0.820453	3.734522	chr9	77944910	77945186	DNA|TcMar-Tigger|Tigger19b	+	chr9	77797527	78030604	GNAQ|ENST00000411677.1	-	77797527,77815615,77922160,78030514	77797648,77815770,77922345,78030604	0.588235
transverse_colon_female_adult_53_years	chr10	69232571	69232588	69232572	+	High_confidence	8	12	37	1.785692	4.722967	chr10	69232519	69232745	SINE|MIR|MIRb	+	chr10	69232576	69267552	STRG.76416.1	+	69232576,69233013,69239041,69240651,69243181,69246078,69247359,69248423,69250289,69250532,69257035,69257326,69258775,69261138,69265584,69266609	69232912,69233133,69239137,69240751,69243365,69246234,69247593,69248728,69250435,69250652,69257131,69257426,69258959,69261294,69265818,69267552	0.810811
transverse_colon_female_adult_53_years	chr10	28335269	28335306	28335269	-	High_confidence	14	24	69	3.330073	4.492036	chr10	28334857	28335233	LTR|ERVL-MaLR|MLT1F	-	chr10	28334810	28335323	STRG.75464.3	-	28334810	28335323	0.956522
transverse_colon_female_adult_53_years	chr7	55025522	55025553	55025552	+	RAMPAGE_only	4	4	11	0.530881	2.921928	chr7	55025123	55025628	LINE|L2|L2	-	chr7	55019150	55118613	STRG.57743.7	+	55019150,55072118	55072089,55118613	0.909091
transverse_colon_female_adult_53_years	chr6	87213675	87213732	87213724	+	RAMPAGE_only	13	15	114	5.501860	5.963078	chr6	87213283	87213856	LTR|ERV1|LTR10A	-	chr6	87204670	87240178	STRG.50965.6	+	87204670,87213330,87214997,87215902,87216298	87210598,87214594,87215142,87216057,87240178	0.982456
transverse_colon_female_adult_53_years	chr10	45594412	45594452	45594451	-	High_confidence	3	3	11	0.530881	3.121928	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45457510	45594491	STRG.75894.1	-	45457510,45459119,45461230,45464238,45489366,45533109,45553111,45594234	45458543,45459267,45461411,45464327,45489417,45533289,45553204,45594491	0.727273
transverse_colon_female_adult_53_years	chr11	68773384	68773415	68773389	-	RAMPAGE_only	5	5	22	1.061763	3.463281	chr11	68773373	68773449	LINE|CR1|L3	+	chr11	68757612	68815503	CPT1A|ENST00000539743.5	-	68757612,68759568,68760224,68761534,68762626,68773264,68775315,68780639,68781770,68784814,68793314,68794803,68796855,68799217,68803999,68807466,68812436,68815333	68757730,68759661,68760338,68761687,68762761,68773429,68775432,68780745,68781959,68785010,68793402,68794911,68796933,68799355,68804101,68807638,68812576,68815503	0.954545
transverse_colon_female_adult_53_years	chr8	11493990	11494028	11493990	+	High_confidence	8	10	37	1.785692	4.786426	chr8	11493862	11494036	SINE|MIR|MIRb	-	chr8	11494000	11564604	BLK|ENST00000259089.8	+	11494000,11543223,11546051,11548031,11549023,11550158,11554742,11555331,11556657,11557961,11561301,11562978,11563902	11494591,11543347,11546103,11548125,11549122,11550262,11554889,11555484,11556837,11558038,11561452,11563110,11564604	0.567568
transverse_colon_female_adult_53_years	chr14	34536100	34536110	34536109	-	High_confidence	5	5	14	0.675667	3.546594	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.857143
transverse_colon_female_adult_53_years	chr2	64401654	64401693	64401692	-	High_confidence	11	12	29	1.399596	4.487123	chr2	64401392	64401771	LTR|Gypsy?|LTR85a	-	chr2	64401012	64401830	STRG.15080.1	-	64401012	64401830	0.862069
transverse_colon_female_adult_53_years	chr16	27286197	27286234	27286233	+	High_confidence	2	2	6	0.289572	2.584963	chr16	27285896	27286308	LTR|ERVL-MaLR|MLT1G	-	chr16	27286084	27286488	STRG.105891.1	+	27286084	27286488	0.666667
transverse_colon_female_adult_53_years	chr8	102978502	102978505	102978504	+	RAMPAGE_only	3	5	8	0.386095	2.521641	chr8	102978224	102978995	DNA|TcMar-Tigger|Tigger6a	+	chr8	102864279	103001684	AZIN1-AS1|ENST00000520750.6	+	102864279,102879894,102937623,102941920,102977586,102995624,103000008	102864623,102880058,102937757,102942053,102978955,102995682,103001684	0.875000
transverse_colon_female_adult_53_years	chr6	35663751	35663802	35663799	-	RAMPAGE_only	11	11	41	1.978739	4.754378	chr6	35663475	35663909	LINE|L2|L2a	+	chr6	35573589	35688915	STRG.48887.2	-	35573589,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35646162,35661967	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35642843,35658655,35688915	0.926829
transverse_colon_female_adult_53_years	chr13	25685710	25685711	25685710	+	RAMPAGE_only	5	5	8	0.386095	2.521641	chr13	25685329	25686219	LINE|L2|L2a	-	chr13	25567132	25927283	ATP8A2|ENST00000491840.1	+	25567132,25570766,25571609,25574807,25577068,25578814,25579807,25581818,25589634,25591253,25699172,25769045,25774848,25828117,25837162,25839545,25860194,25860803,25862300,25927110	25567356,25570872,25571692,25574857,25577138,25578899,25579947,25581957,25589699,25591373,25699345,25769229,25774959,25828192,25837285,25839624,25860256,25860860,25862408,25927283	0.875000
transverse_colon_female_adult_53_years	chr16	53047535	53047597	53047552	-	High_confidence	22	26	49	2.364835	5.109508	chr16	53047342	53047712	LTR|ERVL-MaLR|MLT1B	-	chr16	53046999	53047544	STRG.106443.1	-	53046999,53047396	53047283,53047544	0.510204
transverse_colon_female_adult_53_years	chr20	50130101	50130102	50130101	-	RAMPAGE_only	4	4	7	0.337834	2.521641	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.857143
transverse_colon_female_adult_53_years	chr9	127531649	127531711	127531649	-	RAMPAGE_only	3	4	20	0.965239	3.932138	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127507171	127568953	FAM129B|ENST00000468379.1	-	127507171,127507866,127525057,127527193,127531647,127568819	127507431,127507934,127525163,127527322,127531778,127568953	0.500000
transverse_colon_female_adult_53_years	chr19	44914358	44914410	44914383	+	High_confidence	4	4	23	1.110024	4.243300	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.826087
transverse_colon_female_adult_53_years	chr8	24387314	24387337	24387336	-	RAMPAGE_only	7	7	15	0.723929	3.807355	chr8	24386908	24387825	LTR|ERVK|HERVK22-int	-	chr8	24385719	24548540	STRG.64038.1	-	24385719,24548539	24387991,24548540	0.800000
transverse_colon_female_adult_53_years	chr17	19386333	19386371	19386370	-	High_confidence	2	2	7	0.337834	2.521641	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	1.000000
transverse_colon_female_adult_53_years	chr11	114528292	114528566	114528456	-	RAMPAGE_only	20	20	278	13.416817	6.283245	chr11	114528125	114528623	LINE|L2|L2a	+	chr11	114521715	114530020	STRG.84086.24	-	114521715,114522878	114522503,114530020	0.989209
transverse_colon_female_adult_53_years	chr2	238300061	238300086	238300085	-	High_confidence	6	6	16	0.772191	3.640224	chr2	238299957	238300152	LTR|ERVL|ERV3-16A3_I-int	+	chr2	238295391	238300620	AC012485.2|ENST00000437372.2	-	238295391,238298639,238299801,238300511	238295740,238298776,238300188,238300620	0.562500
transverse_colon_female_adult_53_years	chr1	89272843	89272887	89272859	-	High_confidence	28	29	211	10.183268	6.114449	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.909953
transverse_colon_female_adult_53_years	chr9	121356240	121356242	121356241	-	RAMPAGE_only	9	15	22	1.061763	4.061482	chr9	121356223	121356327	SINE|MIR|MIRb	-	chr9	121339076	121370205	STOM|ENST00000286713.6	-	121339076,121348014,121349119,121353219,121354600,121356052,121370126	121341408,121348149,121349323,121353302,121354673,121356156,121370205	0.954545
transverse_colon_female_adult_53_years	chr17	56904425	56904438	56904425	-	High_confidence	3	3	8	0.386095	2.521641	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.625000
transverse_colon_female_adult_53_years	chr7	87039797	87039870	87039869	-	High_confidence	11	11	46	2.220049	5.115847	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.521739
transverse_colon_female_adult_53_years	chr8	34174869	34174887	34174878	+	High_confidence	12	14	41	1.978739	4.753774	chr8	34174849	34181329	LINE|L1|L1PB1	+	chr8	34174885	34184895	AC087855.2|ENST00000518217.1	+	34174885,34184486	34175013,34184895	0.658537
transverse_colon_female_adult_53_years	chr7	97272546	97272579	97272546	-	High_confidence	64	74	240	11.582864	6.786512	chr7	97272260	97272897	LTR|ERVL|MER73	-	chr7	97265643	97273114	STRG.60176.4	-	97265643	97273114	0.612500
transverse_colon_female_adult_53_years	chr15	29931238	29931294	29931293	-	High_confidence	28	32	110	5.308813	5.732619	chr15	29930932	29931367	DNA|TcMar-Tigger|Tigger2a	-	chr15	29922848	29931237	STRG.99378.1	-	29922848	29931237	0.700000
transverse_colon_female_adult_53_years	chr20	9333276	9333289	9333276	+	High_confidence	3833	3894	6736	325.092383	7.233125	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9333286	9480813	STRG.118559.2	+	9333286,9337125,9338007,9338893,9362895,9365460,9371213,9372302,9373046,9380053,9384200,9387462,9389878,9390530,9393587,9395522,9401489,9405312,9407916,9408632,9409056,9411036,9419806,9421296,9423747,9435559,9437001,9443980,9444177,9453346,9457413,9459634,9468570,9472789,9473278,9476716,9478920	9333570,9337206,9338067,9339037,9362975,9365514,9371295,9372403,9373104,9380162,9384411,9387556,9389958,9390615,9393678,9395618,9401590,9405348,9408058,9408717,9409181,9411088,9419909,9421461,9423952,9435648,9437152,9444030,9444243,9453462,9457489,9459810,9468672,9472847,9473365,9476753,9480813	0.960808
transverse_colon_female_adult_53_years	chr4	39627120	39627121	39627120	-	High_confidence	65	68	78	3.764431	5.393763	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.858974
transverse_colon_female_adult_53_years	chr7	107776920	107776945	107776944	-	High_confidence	15	16	31	1.496120	4.415061	chr7	107776908	107777072	SINE|MIR|MIRc	-	chr7	107776014	107776752	SLC26A3|ENST00000469651.1	-	107776014,107776636	107776544,107776752	0.516129
transverse_colon_female_adult_53_years	chr12	116661543	116661544	116661543	+	High_confidence	10	11	11	0.530881	3.095795	chr12	116660542	116661920	LTR|ERV1|LTR12C	+	chr12	116661581	116698065	AC125603.2|ENST00000546835.1	+	116661581,116697854	116662246,116698065	0.909091
transverse_colon_female_adult_53_years	chr2	101998957	101998978	101998977	+	High_confidence	3	3	10	0.482619	3.121928	chr2	101998446	101999045	LTR|ERVL-MaLR|MLT1H1	-	chr2	101998961	102028423	IL1R2|NR_048564.1	+	101998961,102008514,102009561,102015870,102019637,102022186,102024532,102026110,102028225	101999116,102008642,102009826,102016051,102019812,102022249,102024668,102026253,102028423	0.700000
transverse_colon_female_adult_53_years	chr22	23705504	23705515	23705504	-	RAMPAGE_only	2	3	7	0.337834	2.584963	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638677	23717267	STRG.122891.1	-	23638677,23640307,23652478,23652860,23659864,23683724,23695172,23705428,23709129,23709785,23714186,23715008,23717030	23638942,23640423,23652576,23652944,23660000,23683867,23695517,23705541,23709241,23709867,23714342,23715194,23717267	0.857143
transverse_colon_female_adult_53_years	chr8	101891899	101891930	101891917	-	RAMPAGE_only	3	3	10	0.482619	2.947703	chr8	101891500	101897529	LINE|L1|L1PA2	+	chr8	101692865	101975329	NCALD|ENST00000520690.5	-	101692865,101719251,101915808,101975259	101692896,101719648,101915858,101975329	0.500000
transverse_colon_female_adult_53_years	chr15	90467526	90467554	90467553	+	RAMPAGE_only	3	3	9	0.434357	3.000000	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90388260	90500371	IQGAP1|ENST00000560738.1	+	90388260,90390773,90466046,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390824,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500371	0.888889
transverse_colon_female_adult_53_years	chr6	89656028	89656046	89656045	-	RAMPAGE_only	3	3	7	0.337834	2.521641	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642498	89819723	MDN1|ENST00000369393.7	-	89642498,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89706058,89707360,89708495,89710680,89712035,89712574,89713147,89714542,89715652,89716649,89718365,89718766,89719135,89722954,89723511,89725198,89727832,89728930,89730725,89732556,89738325,89740233,89743149,89743575,89745272,89745491,89747328,89749222,89749542,89750353,89751430,89753511,89754082,89756276,89758254,89758815,89761644,89762318,89771560,89772572,89774620,89776599,89780211,89781398,89785011,89787853,89789779,89790158,89793761,89794099,89794576,89803327,89819505	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89706192,89707476,89708628,89710794,89712256,89712786,89713296,89714751,89715769,89716809,89718627,89719030,89719225,89723143,89723619,89725396,89727955,89729139,89730923,89732775,89738455,89740378,89743280,89743714,89745411,89745626,89747470,89749369,89749751,89750532,89751582,89753622,89754230,89756390,89758351,89758960,89761748,89762530,89771621,89772721,89774733,89776695,89780293,89781592,89785126,89787957,89789911,89790401,89793954,89794207,89794801,89803554,89819723	1.000000
transverse_colon_female_adult_53_years	chr9	72363490	72363507	72363498	-	High_confidence	2	3	9	0.434357	3.000000	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.555556
transverse_colon_female_adult_53_years	chr16	63618045	63618046	63618045	-	High_confidence	27	32	36	1.737430	4.781036	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63531087	63618046	AC138305.1|ENST00000564290.1	-	63531087,63617692	63531304,63618046	0.527778
transverse_colon_female_adult_53_years	chr2	29114158	29114174	29114161	+	High_confidence	4	5	13	0.627405	3.180833	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	1.000000
transverse_colon_female_adult_53_years	chr16	11587444	11587487	11587444	-	High_confidence	5	5	16	0.772191	3.625000	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.812500
transverse_colon_female_adult_53_years	chr7	107776977	107777004	107776981	-	High_confidence	4	6	18	0.868715	3.410417	chr7	107776908	107777072	SINE|MIR|MIRc	-	chr7	107776014	107776752	SLC26A3|ENST00000469651.1	-	107776014,107776636	107776544,107776752	0.611111
transverse_colon_female_adult_53_years	chr11	114650511	114650585	114650584	+	High_confidence	45	55	176	8.494100	5.913855	chr11	114650014	114651054	LINE|L1|L1MCc	+	chr11	114650403	114715651	STRG.84100.1	+	114650403,114651241,114679656,114698044,114703990,114705780,114706394	114651045,114651425,114679762,114698778,114704052,114705996,114715651	0.948864
transverse_colon_female_adult_53_years	chr15	59556109	59556113	59556112	+	High_confidence	2	3	7	0.337834	2.584963	chr15	59556112	59556480	LINE|L2|L2a	-	chr15	59555954	59560143	STRG.101515.1	+	59555954	59560143	0.714286
transverse_colon_female_adult_53_years	chr6	11728691	11728714	11728713	-	High_confidence	2	2	7	0.337834	2.584963	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.714286
transverse_colon_female_adult_53_years	chr15	44811503	44811504	44811503	-	High_confidence	58	64	66	3.185288	4.377649	chr15	44811320	44811696	LTR|ERVL-MaLR|THE1D	-	chr15	44811164	44811485	STRG.100675.1	-	44811164	44811485	0.803030
transverse_colon_female_adult_53_years	chr13	24348819	24348851	24348819	-	High_confidence	6	11	35	1.689168	4.436007	chr13	24348067	24350232	LTR|ERVL|ERVL-B4-int	-	chr13	24348133	24348851	STRG.91519.2	-	24348133	24348851	0.685714
transverse_colon_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	38	38	42	2.027001	4.900116	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.857143
transverse_colon_female_adult_53_years	chr4	2036550	2036588	2036571	+	High_confidence	94	103	507	24.468800	5.652188	chr4	2036585	2036842	LTR|ERVL|ERVL-E-int	+	chr4	2036568	2043964	STRG.32077.3	+	2036568,2039996,2040863,2042326,2042735,2043860	2036661,2040092,2042068,2042484,2042824,2043964	0.875740
transverse_colon_female_adult_53_years	chr18	34331526	34331552	34331526	-	High_confidence	3	3	14	0.675667	2.835238	chr18	34331115	34337159	LINE|L1|L1PA2	+	chr18	34328691	34331547	STRG.112904.1	-	34328691,34331079	34329090,34331547	0.785714
transverse_colon_female_adult_53_years	chr5	96797176	96797193	96797192	-	RAMPAGE_only	3	4	13	0.627405	2.873141	chr5	96797097	96797154	DNA|hAT-Blackjack|MER81	-	chr5	96790584	96793671	ERAP1|ENST00000503311.1	-	96790584,96792060,96793399	96790643,96792192,96793671	0.692308
transverse_colon_female_adult_53_years	chr10	95096081	95096147	95096116	-	RAMPAGE_only	7	7	26	1.254810	4.483856	chr10	95095632	95096781	LINE|L1|L1M1	-	chr10	95036771	95069497	CYP2C8|NM_000770.3	-	95036771,95038896,95042889,95045809,95058334,95064799,95067207,95067528,95069234	95037309,95039038,95043077,95045951,95058511,95064960,95067357,95067691,95069497	0.576923
transverse_colon_female_adult_53_years	chr7	107774295	107774304	107774303	-	RAMPAGE_only	4	5	14	0.675667	2.873141	chr7	107774269	107774556	SINE|Alu|AluJb	+	chr7	107765471	107803207	SLC26A3|ENST00000340010.9	-	107765471,107767578,107767765,107772053,107773919,107774776,107776451,107776636,107778174,107779667,107782796,107782979,107783204,107786826,107787356,107789523,107791047,107791829,107793741,107794378,107803110	107765878,107767644,107767908,107772108,107774153,107774872,107776544,107776706,107778281,107779763,107782874,107783093,107783352,107786909,107787509,107789688,107791235,107791940,107793881,107794597,107803207	0.785714
transverse_colon_female_adult_53_years	chr10	45594328	45594355	45594354	-	High_confidence	2	2	8	0.386095	2.807355	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45457510	45594491	STRG.75894.1	-	45457510,45459119,45461230,45464238,45489366,45533109,45553111,45594234	45458543,45459267,45461411,45464327,45489417,45533289,45553204,45594491	0.750000
transverse_colon_female_adult_53_years	chr11	68833973	68833991	68833973	-	RAMPAGE_only	2	2	11	0.530881	2.732159	chr11	68833857	68833983	SINE|Alu|FLAM_A	-	chr11	68807566	68839684	CPT1A|ENST00000569129.5	-	68807566,68812436,68815333,68839551	68807638,68812576,68815487,68839684	0.545455
transverse_colon_female_adult_53_years	chr2	164761385	164761424	164761409	-	RAMPAGE_only	9	9	51	2.461359	5.133018	chr2	164761399	164761470	SINE|Alu|AluSp	+	chr2	164743188	164773733	COBLL1|ENST00000480873.1	-	164743188,164773706	164743875,164773733	0.568627
transverse_colon_female_adult_53_years	chr5	140697952	140697988	140697952	+	RAMPAGE_only	2	2	10	0.482619	2.921928	chr5	140697883	140698127	DNA|TcMar-Tigger|Tigger19b	+	chr5	140691682	140699248	HARS2|ENST00000642452.1	+	140691682,140693590,140693934,140694184,140695507,140695737,140696028,140696520,140696942,140697163,140697568,140697931,140698492	140691756,140693665,140694054,140694280,140695633,140695845,140696201,140696614,140697070,140697406,140697685,140698078,140699248	0.900000
transverse_colon_female_adult_53_years	chr2	240686302	240686351	240686336	+	High_confidence	4	4	17	0.820453	2.578552	chr2	240685606	240686514	LTR|ERV1|MER49	-	chr2	240686333	240690414	AC011298.1|ENST00000407635.2	+	240686333,240688415,240688601	240687821,240688512,240690414	1.000000
transverse_colon_female_adult_53_years	chr4	48012913	48012936	48012935	-	High_confidence	3	3	6	0.289572	2.584963	chr4	48012591	48013262	LTR|ERV1|MER4-int	-	chr4	47935976	48012944	CNGA1|NM_000087.3	-	47935976,47940762,47942040,47943180,47943370,47949832,47951352,47952582,47981392,48010793,48012888	47937829,47940869,47942148,47943288,47943412,47949895,47951469,47952703,47981500,48010893,48012944	0.666667
transverse_colon_female_adult_53_years	chr7	76591647	76591656	76591647	-	High_confidence	5	9	20	0.965239	3.536887	chr7	76590244	76592675	LINE|L1|L1PA15	+	chr7	76571334	76591759	STRG.58786.1	-	76571334,76591423	76574177,76591759	0.500000
transverse_colon_female_adult_53_years	chr17	4140547	4140577	4140576	-	RAMPAGE_only	8	10	28	1.351334	4.450212	chr17	4140229	4140608	LINE|L2|L2c	+	chr17	4017647	4143020	STRG.108217.3	-	4017647,4017835,4019668,4021128,4022708,4024918,4032125,4032827,4034014,4042428,4044223,4049707,4050780,4051970,4054056,4056215,4057993,4059170,4062752,4064360,4066446,4067162,4070683,4072607,4074149,4075096,4075262,4076636,4076867,4077882,4081375,4082436,4085669,4086485,4087433,4088677,4090718,4095830,4096608,4102316,4104632,4105692,4109652,4112608,4114298,4116971,4123906,4134395	4017730,4017971,4019769,4021320,4022828,4025118,4032258,4033002,4034292,4042568,4044374,4049859,4051043,4052136,4054195,4056345,4058155,4059290,4062917,4064829,4066540,4067242,4070924,4072756,4074351,4075178,4075429,4076759,4076989,4078042,4081490,4082507,4085803,4086655,4087534,4088893,4090830,4095979,4096700,4102415,4104811,4105809,4109863,4112808,4114470,4117166,4124051,4143020	1.000000
transverse_colon_female_adult_53_years	chr7	76828935	76828977	76828976	-	High_confidence	4	4	15	0.723929	3.506891	chr7	76828805	76829163	LTR|ERVL-MaLR|THE1B	-	chr7	76828368	76828789	STRG.58904.1	-	76828368	76828789	0.533333
transverse_colon_female_adult_53_years	chr1	212792419	212792428	212792419	-	High_confidence	2	2	9	0.434357	2.947703	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	0.888889
transverse_colon_female_adult_53_years	chr12	109069834	109069857	109069837	+	RAMPAGE_only	10	10	24	1.158286	3.788755	chr12	109069527	109070326	LINE|L2|L2a	-	chr12	109067593	109081628	USP30|ENST00000467307.1	+	109067593,109071611,109072304,109073437,109081333	109067627,109071710,109072350,109073532,109081628	0.583333
transverse_colon_female_adult_53_years	chr6	31186084	31186118	31186117	-	High_confidence	287	295	710	34.265973	6.933682	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31181774	31186528	STRG.48613.12	-	31181774	31186528	0.961972
transverse_colon_female_adult_53_years	chrX	118727199	118727230	118727199	+	High_confidence	9	12	36	1.737430	4.239098	chrX	118727146	118727201	SINE|MIR|MIRc	-	chrX	118727571	118794539	IL13RA1|ENST00000371666.7	+	118727571,118741016,118746953,118749657,118758054,118761137,118766529,118766843,118773878,118776426,118791761	118727726,118741156,118747092,118749778,118758242,118761289,118766577,118766976,118773975,118776511,118794539	0.916667
transverse_colon_female_adult_53_years	chr1	195721913	195721934	195721933	+	High_confidence	4	4	19	0.916977	3.576618	chr1	195721489	195721970	LTR|ERVK|LTR14C	-	chr1	195721789	195758085	STRG.9785.1	+	195721789,195738115,195749004,195752074,195757775	195722034,195738437,195749147,195752121,195758085	0.842105
transverse_colon_female_adult_53_years	chr2	177499694	177499714	177499713	+	RAMPAGE_only	2	2	7	0.337834	2.584963	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177436983	177543836	STRG.20415.2	+	177436983,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177538073,177541361	177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177541336,177543836	0.857143
transverse_colon_female_adult_53_years	chr1	24108941	24108966	24108963	-	High_confidence	4	4	13	0.627405	2.855389	chr1	24108883	24109009	SINE|MIR|MIR3	+	chr1	24075437	24108954	STRG.1021.1	-	24075437,24076158,24080015,24081329,24082000,24082592,24084467,24086643,24089537,24090064,24090796,24092173,24092946,24094852,24095441,24097922,24099679,24105919,24107072,24107992,24108475	24075475,24076273,24080194,24081456,24082188,24082714,24084639,24086827,24089665,24090118,24090996,24092315,24093108,24094990,24095486,24098011,24099775,24106077,24107232,24108073,24108954	0.923077
transverse_colon_female_adult_53_years	chr4	121074056	121074091	121074071	-	RAMPAGE_only	3	4	12	0.579143	3.459432	chr4	121073822	121075070	LINE|L2|L2c	-	chr4	121037535	121073021	NDNF|ENST00000515757.5	-	121037535,121039929,121045649,121072893	121037657,121040054,121045838,121073021	0.583333
transverse_colon_female_adult_53_years	chr14	68167236	68167296	68167237	-	High_confidence	95	164	419	20.221750	7.066912	chr14	68166677	68167265	LINE|L2|L2	+	chr14	68162002	68167401	STRG.96824.3	-	68162002,68167189	68167065,68167401	0.510740
transverse_colon_female_adult_53_years	chr13	106096029	106096053	106096038	-	High_confidence	7	10	30	1.447858	4.481728	chr13	106095609	106096100	LINE|L2|L2	+	chr13	106095511	106095771	STRG.93861.1	-	106095511	106095771	0.500000
transverse_colon_female_adult_53_years	chr1	86521236	86521237	86521236	+	High_confidence	16	16	16	0.772191	3.702820	chr1	86520963	86521311	LINE|L2|L2c	-	chr1	86521895	86522729	STRG.5024.1	+	86521895	86522729	0.625000
transverse_colon_female_adult_53_years	chr5	151037131	151037148	151037131	-	High_confidence	2	3	8	0.386095	2.750000	chr5	151037023	151037247	SINE|MIR|MIRc	-	chr5	151030483	151037438	TNIP1|ENST00000522574.5	-	151030483,151032286,151033607,151035001,151035581,151036789	151030747,151032383,151033799,151035067,151035707,151037438	1.000000
transverse_colon_female_adult_53_years	chr2	240022172	240022280	240022172	-	RAMPAGE_only	18	18	56	2.702668	3.991271	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.964286
transverse_colon_female_adult_53_years	chr7	99658658	99658754	99658658	-	RAMPAGE_only	3	3	22	1.061763	3.653757	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648199	99660602	STRG.60382.18	-	99648199,99650072	99648400,99660602	0.954545
transverse_colon_female_adult_53_years	chr1	149429233	149429241	149429233	+	RAMPAGE_only	8	8	17	0.820453	3.852169	chr1	149429192	149429328	SINE|MIR|MIRc	+	chr1	149390616	149477233	STRG.6984.2	+	149390616,149430933,149455317,149463490	149390922,149431015,149455577,149477233	0.529412
transverse_colon_female_adult_53_years	chr3	188153195	188153229	188153228	+	High_confidence	5	5	15	0.723929	3.664498	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.666667
transverse_colon_female_adult_53_years	chr12	27751997	27752000	27751997	+	RAMPAGE_only	5	6	11	0.530881	3.027169	chr12	27751956	27752215	SINE|Alu|AluJr	+	chr12	27710846	27755537	MRPS35|ENST00000542791.1	+	27710846,27755180	27710955,27755537	0.545455
transverse_colon_female_adult_53_years	chr15	45513612	45513626	45513612	+	RAMPAGE_only	4	4	11	0.530881	2.921928	chr15	45513473	45513967	LINE|L1|L1M4	+	chr15	45511152	45519664	HMGN2P46|ENST00000495658.2	+	45511152,45512372,45513697,45515768,45519262	45511205,45512449,45513963,45515892,45519664	0.909091
transverse_colon_female_adult_53_years	chr16	15740077	15740182	15740077	-	RAMPAGE_only	20	21	102	4.922717	6.218850	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	1.000000
transverse_colon_female_adult_53_years	chr14	50159437	50159445	50159437	-	RAMPAGE_only	3	3	11	0.530881	3.321928	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50117119	50180654	STRG.96064.7	-	50117119,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50174453,50180571	50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50174552,50180654	0.909091
transverse_colon_female_adult_53_years	chr16	15798664	15798686	15798664	-	RAMPAGE_only	26	27	65	3.137026	5.250702	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.861538
transverse_colon_female_adult_53_years	chr12	46266488	46266516	46266515	-	High_confidence	12	15	35	1.689168	4.764858	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.800000
transverse_colon_female_adult_53_years	chr3	124631214	124631243	124631242	+	RAMPAGE_only	11	12	21	1.013501	4.011365	chr3	124631189	124632228	LINE|L2|L2a	+	chr3	124584681	124650915	KALRN|ENST00000454902.1	+	124584681,124632419,124633848,124650807	124584906,124632703,124633953,124650915	0.761905
transverse_colon_female_adult_53_years	chr1	111128023	111128030	111128023	-	High_confidence	4	6	10	0.482619	2.521928	chr1	111127946	111128007	DNA|hAT-Charlie|Charlie7a	-	chr1	111118123	111128027	DRAM2|ENST00000461449.5	-	111118123,111118804,111119876,111120515,111126226,111127982	111118267,111118897,111119959,111120693,111126294,111128027	0.600000
transverse_colon_female_adult_53_years	chr6	106098075	106098089	106098088	+	RAMPAGE_only	3	3	9	0.434357	2.750000	chr6	106098107	106098187	LINE|L2|L2	+	chr6	106086321	106107508	STRG.51605.6	+	106086321,106088200,106104824	106086595,106099552,106107508	0.777778
transverse_colon_female_adult_53_years	chr7	12497207	12497211	12497207	+	High_confidence	6	6	15	0.723929	3.467720	chr7	12497211	12500000	LINE|L1|L1HS	+	chr7	12497245	12541135	LOC102725191|NR_136262.1	+	12497245,12528901,12531012,12540919	12497309,12529044,12531092,12541135	0.600000
transverse_colon_female_adult_53_years	chr6	25753323	25753368	25753323	+	High_confidence	13	15	82	3.957479	5.978056	chr6	25753191	25754237	LINE|L2|L2	-	chr6	25753311	25781174	STRG.48091.9	+	25753311,25761926,25768984,25773274,25776811,25779053	25753416,25762053,25771012,25776727,25778016,25781174	0.512195
transverse_colon_female_adult_53_years	chr11	114528225	114528226	114528225	-	RAMPAGE_only	7	7	8	0.386095	2.807355	chr11	114528125	114528623	LINE|L2|L2a	+	chr11	114521715	114530020	STRG.84086.24	-	114521715,114522878	114522503,114530020	0.875000
transverse_colon_female_adult_53_years	chr1	195722208	195722295	195722208	-	High_confidence	3	3	21	1.013501	3.787144	chr1	195721970	195723453	LTR|ERV1|LTR12C	-	chr1	195459449	195722409	STRG.9786.2	-	195459449,195470977,195568876,195690604,195721819	195462590,195471089,195568995,195690765,195722409	0.857143
transverse_colon_female_adult_53_years	chr13	48492758	48492791	48492783	-	High_confidence	18	19	40	1.930477	4.701746	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.700000
transverse_colon_female_adult_53_years	chr6	79631101	79631329	79631302	+	High_confidence	808	815	4039	194.929949	7.376704	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.960386
transverse_colon_female_adult_53_years	chr3	170045493	170045529	170045497	+	RAMPAGE_only	6	6	33	1.592644	4.518397	chr3	170045282	170045619	SINE|Alu|AluSc8	+	chr3	170049854	170084461	GPR160|ENST00000485735.6	+	170049854,170079773,170083904	170049904,170079897,170084461	0.636364
transverse_colon_female_adult_53_years	chr12	31756998	31756999	31756998	-	High_confidence	329	389	470	22.683109	6.453566	chr12	31756862	31757481	LTR|ERV1|LTR8B	-	chr12	31745264	31757061	STRG.86855.1	-	31745264,31753147,31756871	31752737,31753336,31757061	0.561702
transverse_colon_female_adult_53_years	chr1	205512316	205512320	205512316	+	RAMPAGE_only	13	13	20	0.965239	3.546439	chr1	205512088	205512401	LINE|L2|L2	-	chr1	205504801	205527825	CDK18|ENST00000419301.1	+	205504801,205523146,205523482,205524231,205525138,205526064,205526366,205526774,205527793	205504878,205523297,205523715,205524357,205525195,205526179,205526461,205526837,205527825	0.950000
transverse_colon_female_adult_53_years	chr2	201169858	201169875	201169858	+	RAMPAGE_only	2	2	8	0.386095	2.750000	chr2	201168284	201170266	LINE|L1|L1P3	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	1.000000
transverse_colon_female_adult_53_years	chr8	26395611	26395612	26395611	+	High_confidence	16	18	20	0.965239	3.621928	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.800000
transverse_colon_female_adult_53_years	chr17	50476629	50476660	50476652	-	High_confidence	93	101	189	9.121505	5.966782	chr17	50476465	50476629	SINE|MIR|MIRb	-	chr17	50469328	50476646	STRG.110589.1	-	50469328,50476386	50471085,50476646	0.708995
transverse_colon_female_adult_53_years	chr11	65432889	65432955	65432923	+	RAMPAGE_only	25	29	69	3.330073	4.886225	chr11	65432693	65433229	LINE|L1|L1PB3	-	chr11	65423637	65445540	STRG.81845.2	+	65423637,65426060,65439492	65425737,65439402,65445540	1.000000
transverse_colon_female_adult_53_years	chr12	91179383	91179393	91179383	-	High_confidence	3	3	10	0.482619	3.321928	chr12	91179305	91179397	SINE|MIR|MIRb	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.800000
transverse_colon_female_adult_53_years	chr10	4678100	4678168	4678146	-	High_confidence	10	10	40	1.930477	4.643943	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4650184	4678154	MANCR|ENST00000430998.6	-	4650184,4657600,4659452,4678048	4651203,4657725,4659680,4678154	0.550000
transverse_colon_female_adult_53_years	chr11	129839632	129839682	129839632	+	RAMPAGE_only	4	6	13	0.627405	3.085055	chr11	129839532	129839834	SINE|Alu|AluJb	-	chr11	129850331	129859215	TMEM45B|ENST00000524567.1	+	129850331,129852474,129854609,129855707,129857312,129858573	129850604,129852660,129854816,129855892,129857458,129859215	0.538462
transverse_colon_female_adult_53_years	chr5	149885367	149885370	149885369	-	RAMPAGE_only	9	17	24	1.158286	4.349649	chr5	149885363	149885504	SINE|MIR|MIRc	+	chr5	149858089	149898477	STRG.45752.1	-	149858089,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362	149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898477	0.708333
transverse_colon_female_adult_53_years	chr9	71964326	71964327	71964326	+	RAMPAGE_only	7	7	7	0.337834	2.521641	chr9	71963356	71964735	LTR|ERV1|LTR12C	+	chr9	71958283	71967630	STRG.71415.1	+	71958283	71967630	0.857143
transverse_colon_female_adult_53_years	chr2	17720951	17720960	17720951	-	RAMPAGE_only	3	3	8	0.386095	2.500000	chr2	17720840	17720910	DNA|TcMar-Mariner|MADE2	-	chr2	17716749	17746412	SMC6|ENST00000381272.5	-	17716749,17717087,17718076,17720939,17721141,17725256,17726388,17731077,17731740,17738220,17741611,17745826	17716905,17717176,17718223,17721038,17721261,17725358,17726469,17731139,17731877,17738326,17741729,17746412	0.625000
transverse_colon_female_adult_53_years	chr18	49872174	49872193	49872174	-	RAMPAGE_only	5	9	15	0.723929	3.807355	chr18	49871998	49872125	SINE|MIR|MIR3	-	chr18	49863261	49876283	MYO5B|ENST00000587895.1	-	49863261,49864140,49872166,49875686,49876235	49863327,49864380,49872232,49875827,49876283	0.666667
transverse_colon_female_adult_53_years	chr7	87519338	87519364	87519338	-	High_confidence	2	3	9	0.434357	2.750000	chr7	87519184	87519318	SINE|5S-Deu-L2|AmnSINE1	-	chr7	87505901	87518963	ABCB1|ENST00000475929.5	-	87505901,87509274,87515230,87516508,87518880	87506043,87509481,87515428,87516665,87518963	0.888889
transverse_colon_female_adult_53_years	chr21	41480700	41480727	41480702	-	RAMPAGE_only	8	12	28	1.351334	3.994680	chr21	41480630	41480937	SINE|Alu|AluSx1	-	chr21	41466008	41507982	TMPRSS2|ENST00000458356.5	-	41466008,41467733,41468395,41470647,41471805,41473324,41476576,41479171,41480475,41488393,41489506,41494355,41498118,41507949	41466153,41467886,41468538,41470743,41471981,41473496,41476620,41479282,41480602,41488513,41489593,41494578,41498189,41507982	0.642857
transverse_colon_female_adult_53_years	chr4	81153824	81153867	81153866	-	High_confidence	16	16	68	3.281811	5.506437	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81087369	81153732	PRKG2|ENST00000545647.5	-	81087369,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153429,81153643	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153555,81153732	0.750000
transverse_colon_female_adult_53_years	chr1	45651964	45651996	45651964	-	High_confidence	4	4	11	0.530881	3.121928	chr1	45651932	45652028	LINE|L1|L1ME3C	+	chr1	45651038	45651826	AL604028.2|ENST00000437848.1	-	45651038	45651826	0.727273
transverse_colon_female_adult_53_years	chr19	10825128	10825215	10825214	+	RAMPAGE_only	4	5	34	1.640906	4.415458	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	0.941176
transverse_colon_female_adult_53_years	chr7	93219150	93219195	93219179	-	High_confidence	3	3	16	0.772191	3.506891	chr7	93219071	93219143	LINE|CR1|L3	-	chr7	93188585	93219545	HEPACAM2|ENST00000440868.5	-	93188585,93192253,93195827,93197240,93197484,93208579,93215400,93219100	93189270,93192363,93195901,93197278,93197610,93208876,93215685,93219545	0.875000
transverse_colon_female_adult_53_years	chr8	11795650	11795668	11795667	+	High_confidence	3	3	8	0.386095	2.807355	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287744.1	+	11795572,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.875000
transverse_colon_female_adult_53_years	chr5	18746155	18746202	18746155	-	High_confidence	10	10	26	1.254810	4.546594	chr5	18746065	18746356	LTR|ERV1|LTR12F	-	chr5	18744488	18746133	STRG.39958.1	-	18744488	18746133	0.961538
transverse_colon_female_adult_53_years	chr2	47369310	47369313	47369310	+	High_confidence	342	428	547	26.399278	5.414017	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369147	47387028	EPCAM|NM_002354.2	+	47369147,47373462,47373807,47375233,47377013,47378952,47379768,47385165,47386571	47369581,47373570,47374048,47375299,47377077,47379054,47379969,47385210,47387028	0.954296
transverse_colon_female_adult_53_years	chr7	35012317	35012346	35012327	-	RAMPAGE_only	4	4	16	0.772191	3.773557	chr7	35011987	35012416	LTR|ERVL|LTR16	+	chr7	34928875	35037525	DPY19L1|ENST00000638088.1	-	34928875,34937993,34939275,34940152,34941764,34942614,34945666,34947629,34949796,34954697,34955307,34957983,34966893,34969432,34973513,34989883,35010467,35011329,35013567,35017881,35018571,35037096	34931729,34938119,34939375,34940327,34941884,34942639,34945716,34947701,34949898,34954778,34955367,34958070,34966971,34969532,34973605,34989941,35010561,35011450,35013705,35017969,35018596,35037525	0.500000
transverse_colon_female_adult_53_years	chr21	38959445	38959448	38959445	+	High_confidence	48	48	71	3.426597	5.629004	chr21	38959250	38959684	LTR|ERVL-MaLR|MLT1C	+	chr21	38959455	38960436	STRG.122151.1	+	38959455	38960436	0.943662
transverse_colon_female_adult_53_years	chr15	39609308	39609343	39609309	-	High_confidence	196	234	585	28.233231	7.212273	chr15	39608720	39609354	LINE|L1|L1MA7	+	chr15	39588356	39609321	STRG.100292.2	-	39588356,39594054,39609163	39593683,39600926,39609321	0.786325
transverse_colon_female_adult_53_years	chr19	35122666	35122706	35122705	+	RAMPAGE_only	7	8	35	1.689168	4.712319	chr19	35122484	35122706	LINE|L2|L2a	+	chr19	35119362	35123286	FXYD3|ENST00000605677.1	+	35119362,35121077,35121221,35122764	35119416,35121110,35121245,35123286	0.771429
transverse_colon_female_adult_53_years	chr2	199428634	199428643	199428642	-	RAMPAGE_only	5	5	9	0.434357	3.000000	chr2	199428484	199428715	SINE|MIR|MIR	+	chr2	199408632	199456088	STRG.21544.11	-	199408632,199423581,199455868	199423504,199433514,199456088	0.888889
transverse_colon_female_adult_53_years	chr8	143281669	143281687	143281686	-	High_confidence	24	25	85	4.102264	5.556832	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143281069	143281665	MINCR|ENST00000524335.1	-	143281069,143281481	143281384,143281665	0.564706
transverse_colon_female_adult_53_years	chr7	11194708	11194709	11194708	+	RAMPAGE_only	25	26	36	1.737430	4.650572	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.527778
transverse_colon_female_adult_53_years	chr8	12522253	12522266	12522253	+	RAMPAGE_only	15	16	30	1.447858	4.211261	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.633333
transverse_colon_female_adult_53_years	chr9	35772199	35772234	35772199	+	High_confidence	1	1	9	0.434357	3.000000	chr9	35772160	35772420	LINE|L2|L2	-	chr9	35772162	35780598	AL133410.1|ENST00000574939.1	+	35772162,35780266	35772376,35780598	0.777778
transverse_colon_female_adult_53_years	chr11	58597400	58597419	58597418	+	RAMPAGE_only	3	3	8	0.386095	2.807355	chr11	58595946	58598465	DNA|TcMar-Tigger|Tigger2	-	chr11	58609978	58624639	ZFP91-CNTF|ENST00000422974.2	+	58609978,58610297,58610949,58611603,58612277,58612761,58614228,58616715,58617195,58622740,58624033	58610039,58610334,58611054,58611738,58612328,58612840,58614343,58616815,58617568,58622866,58624639	0.875000
transverse_colon_female_adult_53_years	chr1	95066337	95066338	95066337	-	RAMPAGE_only	5	5	7	0.337834	2.807355	chr1	95066241	95066522	SINE|Alu|AluSq2	-	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.571429
transverse_colon_female_adult_53_years	chr2	118143019	118143020	118143019	-	RAMPAGE_only	7	8	11	0.530881	3.121928	chr2	118137000	118143020	LINE|L1|L1PA2	-	chr2	118132127	118186386	THORLNC|ENST00000414886.5	-	118132127,118176764,118183086,118186230	118132372,118176905,118183322,118186386	0.636364
transverse_colon_female_adult_53_years	chr11	14891187	14891223	14891222	-	High_confidence	4	4	10	0.482619	2.725481	chr11	14891179	14891312	SINE|MIR|MIR	+	chr11	14878037	14891651	CYP2R1|ENST00000532378.5	-	14878037,14879113,14880135,14885775,14890431,14890899	14878297,14879443,14880359,14885917,14890469,14891651	0.800000
transverse_colon_female_adult_53_years	chr2	173533121	173533154	173533121	+	High_confidence	5	5	12	0.579143	3.584963	chr2	173527289	173533317	LINE|L1|L1PA3	-	chr2	173532705	173534270	STRG.19978.1	+	173532705	173534270	0.666667
transverse_colon_female_adult_53_years	chr9	72363564	72363574	72363573	-	High_confidence	3	3	8	0.386095	2.807355	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.500000
transverse_colon_female_adult_53_years	chr4	70663268	70663269	70663268	-	RAMPAGE_only	9	9	14	0.675667	2.968919	chr4	70663216	70663491	SINE|Alu|AluSz	-	chr4	70655540	70666631	JCHAIN|NM_144646.3	-	70655540,70657210,70662091,70666426	70656539,70657291,70662215,70666631	0.928571
transverse_colon_female_adult_53_years	chr12	4720116	4720161	4720126	-	High_confidence	4	4	22	1.061763	4.368523	chr12	4720007	4720593	LTR|ERVK|LTR14C	-	chr12	4700416	4720102	LOC101929549|NR_110112.1	-	4700416,4703312,4704177,4719864	4701179,4703440,4704297,4720102	0.818182
transverse_colon_female_adult_53_years	chr3	12994707	12994726	12994725	-	High_confidence	3	3	8	0.386095	2.521641	chr3	12994635	12994703	SINE|MIR|MIRc	-	chr3	12908348	12994384	IQSEC1|ENST00000648386.1	-	12908348,12909272,12911628,12913427,12915103,12915593,12920429,12922119,12924580,12935447,12941570,12994080	12908525,12909434,12911728,12913553,12915133,12915733,12920596,12922242,12924742,12936697,12941865,12994384	0.625000
transverse_colon_female_adult_53_years	chr5	149905164	149905189	149905188	-	RAMPAGE_only	79	101	215	10.376316	6.263812	chr5	149904974	149905604	LINE|L2|L2c	+	chr5	149857954	149944793	PDE6A|ENST00000617647.4	-	149857954,149859891,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647,149907311,149914942,149921634,149931027,149944199	149858530,149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149903695,149907378,149915007,149921709,149931168,149944793	0.930233
transverse_colon_female_adult_53_years	chr4	148638524	148638525	148638524	-	RAMPAGE_only	4	4	7	0.337834	2.521641	chr4	148638295	148638650	LTR|ERVL-MaLR|THE1A	-	chr4	148622282	148680537	STRG.38241.4	-	148622282,148644525	148644505,148680537	1.000000
transverse_colon_female_adult_53_years	chr11	114651543	114651544	114651543	-	High_confidence	21683	21824	23039	1111.906682	5.862221	chr11	114651116	114651893	LTR|ERV1|LTR12	-	chr11	114640385	114651608	STRG.84086.25	-	114640385,114648240	114645469,114651608	0.950432
transverse_colon_female_adult_53_years	chr14	91646234	91646235	91646234	-	High_confidence	9	10	10	0.482619	2.947703	chr14	91640244	91646233	LINE|L1|L1PA2	-	chr14	91635523	91646235	CATSPERB|ENST00000556901.1	-	91635523,91639095,91646136	91636579,91639250,91646235	0.900000
transverse_colon_female_adult_53_years	chr20	18794077	18794086	18794077	+	High_confidence	27	27	65	3.137026	4.566266	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.969231
transverse_colon_female_adult_53_years	chr8	144853497	144853556	144853555	-	High_confidence	11	12	55	2.654406	5.454087	chr8	144853538	144853640	LTR|ERV1|LTR54	-	chr8	144850165	144853578	COMMD5|NM_001081003.2	-	144850165,144853371	144851395,144853578	0.963636
transverse_colon_female_adult_53_years	chr8	23243634	23243635	23243634	+	High_confidence	18	18	18	0.868715	4.058814	chr8	23243551	23243732	LTR|ERV1|LTR21A	+	chr8	23243636	23262000	CHMP7|NM_152272.4	+	23243636,23246255,23249209,23255246,23256459,23258032,23258329,23258731,23259065,23260143,23260537	23243844,23246994,23249381,23255432,23256593,23258081,23258449,23258830,23259126,23260323,23262000	0.944444
transverse_colon_female_adult_53_years	chr4	81154211	81154222	81154221	-	High_confidence	24	25	85	4.102264	5.345819	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.917647
transverse_colon_female_adult_53_years	chrX	5726324	5726325	5726324	-	High_confidence	26	27	31	1.496120	3.522496	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.903226
transverse_colon_female_adult_53_years	chr12	64293377	64293380	64293379	-	High_confidence	8	14	14	0.675667	3.664498	chr12	64287349	64293377	LINE|L1|L1PA2	-	chr12	64266982	64293383	C12orf56|ENST00000536975.5	-	64266982,64270535,64274900,64275297,64277679,64284663,64285953,64293280	64267288,64270714,64274975,64275372,64277803,64284753,64286060,64293383	0.714286
transverse_colon_female_adult_53_years	chr8	24324974	24324976	24324975	+	High_confidence	10	16	21	1.013501	3.880180	chr8	24324695	24325068	LTR|ERVL-MaLR|MLT1H1	-	chr8	24325036	24332725	ADAM28|ENST00000521110.1	+	24325036,24326553,24329984,24331149,24332659	24325089,24326635,24330115,24331327,24332725	0.523810
transverse_colon_female_adult_53_years	chr12	31121301	31121323	31121301	-	RAMPAGE_only	4	4	11	0.530881	2.646439	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.727273
transverse_colon_female_adult_53_years	chr16	66943874	66944351	66944230	+	RAMPAGE_only	69	69	822	39.671309	6.522061	chr16	66944189	66944323	SINE|Alu|FLAM_A	+	chr16	66934470	66945096	CES2|NR_036684.1	+	66934470,66938036,66939216,66940221,66940436,66941123,66941505,66941767,66942104,66942647,66943298,66943838	66935976,66938241,66939358,66940355,66940695,66941222,66941646,66941848,66942249,66942785,66943371,66945096	0.998783
transverse_colon_female_adult_53_years	chr20	1467679	1467723	1467699	-	High_confidence	19	19	66	3.185288	5.202820	chr20	1467673	1468159	LTR|ERV1|LTR10B	+	chr20	1442161	1467692	NSFL1C|ENST00000216879.8	-	1442161,1445665,1452492,1453030,1454212,1454966,1458199,1464328,1466719	1443911,1445830,1452630,1453140,1454305,1455132,1458274,1464426,1467692	0.969697
transverse_colon_female_adult_53_years	chr19	35137182	35137190	35137182	+	RAMPAGE_only	2	2	7	0.337834	2.584963	chr19	35137130	35137263	SINE|MIR|MIRc	-	chr19	35138788	35143055	FXYD1|NM_021902.3	+	35138788,35140075,35140596,35141131,35141535,35142471,35142719,35142916	35138894,35140140,35140629,35141206,35141572,35142521,35142771,35143055	0.571429
transverse_colon_female_adult_53_years	chr6	27367612	27367613	27367612	-	RAMPAGE_only	4	6	7	0.337834	2.584963	chr6	27367435	27367797	LTR|ERVL-MaLR|MSTA	-	chr6	27357822	27371525	ZNF204P|NR_002722.2	-	27357822,27363178,27367516,27370135	27360221,27363302,27367612,27371525	0.857143
transverse_colon_female_adult_53_years	chr12	109179261	109179282	109179281	+	RAMPAGE_only	2	3	8	0.386095	2.521641	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109139396	109260147	ACACB|ENST00000377854.9	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260147	0.875000
transverse_colon_female_adult_53_years	chr21	29121989	29121990	29121989	+	High_confidence	5	5	8	0.386095	2.521641	chr21	29121887	29122110	DNA|hAT-Charlie|Charlie29a	+	chr21	29122054	29175029	MAP3K7CL|ENST00000460883.5	+	29122054,29149188,29159940,29174711	29122213,29149250,29160056,29175029	0.750000
transverse_colon_female_adult_53_years	chr11	114705478	114705498	114705484	+	RAMPAGE_only	10	11	28	1.351334	4.066109	chr11	114705404	114705591	SINE|tRNA-RTE|MamSINE1	+	chr11	114687473	114741361	STRG.84100.3	+	114687473,114698044,114703990,114739672	114697917,114698778,114705996,114741361	0.928571
transverse_colon_female_adult_53_years	chr14	101819779	101819793	101819781	+	RAMPAGE_only	5	7	15	0.723929	3.664498	chr14	101819651	101819923	SINE|Alu|AluJb	-	chr14	101761861	101821098	PPP2R5C|ENST00000556068.5	+	101761861,101762904,101786017,101818026	101761920,101762970,101786183,101821098	0.533333
transverse_colon_female_adult_53_years	chr2	38082980	38083072	38083053	+	High_confidence	4	4	21	1.013501	4.106603	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083096	38084486	STRG.13963.1	+	38083096	38084486	0.761905
transverse_colon_female_adult_53_years	chr1	43875626	43875629	43875626	+	RAMPAGE_only	13	13	20	0.965239	3.431624	chr1	43875454	43875808	LTR|ERVL-MaLR|THE1D	+	chr1	43879243	43930838	ST3GAL3|ENST00000645644.1	+	43879243,43894382,43898234,43899167,43899540,43920403,43920781,43930131	43879507,43894477,43898298,43899263,43899727,43920550,43920928,43930838	0.700000
transverse_colon_female_adult_53_years	chr1	43452934	43452970	43452969	-	High_confidence	2	2	6	0.289572	2.584963	chr1	43452925	43453093	LINE|L2|L2c	+	chr1	43451666	43453675	STRG.2331.9	-	43451666,43451797,43451934,43452204,43453594	43451717,43451847,43452013,43453497,43453675	1.000000
transverse_colon_female_adult_53_years	chr6	44126632	44126692	44126632	+	High_confidence	54	54	90	4.343574	5.614145	chr6	44126578	44126686	LINE|CR1|X7A_LINE	-	chr6	44126659	44140328	STRG.49396.3	+	44126659,44126797,44134560,44135016,44135327,44136348,44138479,44139466,44139707,44140251	44126715,44127141,44134743,44135096,44135366,44136439,44138517,44139609,44139759,44140328	0.966667
transverse_colon_female_adult_53_years	chr11	63563660	63563682	63563681	-	High_confidence	8	8	13	0.627405	3.334679	chr11	63563436	63563737	SINE|Alu|AluY	+	chr11	63552769	63563383	HRASLS2|ENST00000255695.1	-	63552769,63558391,63560084,63563315	63553065,63558660,63560193,63563383	0.923077
transverse_colon_female_adult_53_years	chr7	140260535	140260547	140260535	-	RAMPAGE_only	31	32	67	3.233550	5.657882	chr7	140260344	140260594	LINE|CR1|CR1_Mam	-	chr7	140084745	140177035	KDM7A|ENST00000397560.6	-	140084745,140091803,140094055,140096554,140096898,140097544,140098878,140099898,140101950,140111094,140113490,140119112,140120441,140124620,140126636,140127441,140129492,140133538,140139104,140176743	140091188,140092077,140094138,140096763,140097047,140097642,140099033,140100023,140102160,140111184,140113582,140119219,140120529,140124783,140126823,140127583,140129653,140133656,140139190,140177035	0.507463
transverse_colon_female_adult_53_years	chr11	1092865	1092911	1092865	+	RAMPAGE_only	3	3	12	0.579143	3.459432	chr11	1092816	1092887	DNA|hAT-Ac|OldhAT1	-	chr11	1077063	1098212	STRG.79248.2	+	1077063,1078122,1078311,1081661,1082284,1082480,1082877,1083076,1083424,1083652,1084290,1084591,1085067,1085553,1085744,1086245,1086734,1087754,1087946,1088257,1089508,1089941,1090763,1092398,1092843,1094141,1097115	1078042,1078232,1078522,1081787,1082402,1082619,1082988,1083146,1083562,1083817,1084385,1084718,1085323,1085606,1085845,1086397,1086873,1087865,1088126,1088497,1089665,1090073,1090911,1092442,1093047,1096662,1098212	0.916667
transverse_colon_female_adult_53_years	chr14	50533190	50533306	50533254	+	High_confidence	18	24	112	5.405337	6.133391	chr14	50533262	50533367	SINE|MIR|MIRc	+	chr14	50533081	50633068	ATL1|NM_001127713.1	+	50533081,50560126,50587830,50590940,50591534,50593845,50595575,50613258,50614372,50620598,50621842,50623176,50628030,50632228	50533367,50560299,50588078,50591075,50591639,50593896,50595632,50613351,50614511,50620726,50621899,50623248,50628462,50633068	0.678571
transverse_colon_female_adult_53_years	chr4	113695947	113695967	113695947	-	RAMPAGE_only	2	2	7	0.337834	2.584963	chr4	113695554	113696179	LINE|L2|L2a	+	chr4	113454104	113761068	CAMK2D|ENST00000342666.9	-	113454104,113455725,113457334,113460146,113465528,113500462,113509637,113513327,113513829,113515068,113517562,113531215,113537340,113548656,113552030,113609151,113661712,113759319,113761003	113454515,113455821,113457563,113460241,113465604,113500511,113509675,113513370,113513913,113515191,113517657,113531299,113537443,113548729,113552096,113609206,113661772,113759414,113761068	0.714286
transverse_colon_female_adult_53_years	chr1	64757440	64757450	64757440	+	RAMPAGE_only	30	30	86	4.150526	5.744340	chr1	64757260	64757640	LTR|ERVL-MaLR|MLT1B	+	chr1	64745094	64833229	RAVER2|ENST00000294428.7	+	64745094,64768655,64777622,64781379,64789387,64802975,64804733,64804990,64807205,64812737,64814703,64830838	64745421,64768722,64778092,64781571,64789514,64803061,64804838,64805105,64807474,64812849,64814840,64833229	0.593023
transverse_colon_female_adult_53_years	chr5	121918386	121918420	121918386	-	RAMPAGE_only	3	3	12	0.579143	2.688722	chr5	121918309	121918387	LTR|ERVL-MaLR|MLT1K	+	chr5	121912111	121916988	STRG.43904.1	-	121912111,121916440	121912442,121916988	1.000000
transverse_colon_female_adult_53_years	chr5	150183695	150184274	150183695	+	RAMPAGE_only	32	32	391	18.870416	6.690059	chr5	150183743	150183890	SINE|MIR|MIR1_Amn	+	chr5	150166889	150184558	CDX1|ENST00000616154.1	+	150166889,150167232,150182767,150183473	150166912,150167321,150182913,150184558	0.969309
transverse_colon_female_adult_53_years	chr2	187513625	187513653	187513652	-	High_confidence	2	3	7	0.337834	2.584963	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	0.857143
transverse_colon_female_adult_53_years	chr11	75728615	75728646	75728644	+	RAMPAGE_only	6	10	18	0.868715	3.572469	chr11	75728518	75728688	SINE|MIR|MIR3	-	chr11	75719373	75732958	MOGAT2|ENST00000526712.1	+	75719373,75727434,75727969,75728789,75731131	75720170,75727639,75728144,75728989,75732958	0.555556
transverse_colon_female_adult_53_years	chr12	100410563	100410618	100410563	+	High_confidence	75	75	191	9.218029	5.933584	chr12	100410510	100410676	SINE|Alu|AluSx1	+	chr12	100410620	100420089	SLC17A8|ENST00000552697.1	+	100410620,100412769,100418028,100419814	100410699,100412880,100418156,100420089	0.743455
transverse_colon_female_adult_53_years	chr12	104030726	104030727	104030726	+	High_confidence	22	22	25	1.206548	4.501629	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.920000
transverse_colon_female_adult_53_years	chr20	31573363	31573414	31573413	+	RAMPAGE_only	20	20	40	1.930477	4.088709	chr20	31573375	31573489	SINE|MIR|MIR	+	chr20	31572143	31573879	STRG.119467.1	+	31572143	31573879	0.700000
transverse_colon_female_adult_53_years	chr2	38515493	38515515	38515493	-	High_confidence	3	3	8	0.386095	2.500000	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.750000
transverse_colon_female_adult_53_years	chr6	48111154	48111178	48111177	-	RAMPAGE_only	6	6	14	0.675667	3.238901	chr6	48110974	48111361	LTR|ERVL|LTR33	+	chr6	47878027	48068689	PTCHD4|NM_001013732.3	-	47878027,48008633,48068229	47879936,48009114,48068689	0.500000
transverse_colon_female_adult_53_years	chr9	128113464	128113553	128113530	-	RAMPAGE_only	4	4	26	1.254810	4.053509	chr9	128113521	128113996	LTR|ERVL-MaLR|MLT1D	+	chr9	128105234	128118649	STRG.73889.1	-	128105234,128115073,128117709,128117922,128118236	128114686,128115289,128117835,128118118,128118649	0.923077
transverse_colon_female_adult_53_years	chrX	74260694	74260747	74260731	-	RAMPAGE_only	3	3	17	0.820453	3.499228	chrX	74260636	74260969	SINE|Alu|AluJb	+	chrX	74219897	74292351	STRG.127252.3	-	74219897,74261945,74280930,74281701,74292168	74261775,74280494,74281085,74281848,74292351	1.000000
transverse_colon_female_adult_53_years	chr5	131224467	131224471	131224467	-	High_confidence	89	90	147	7.094504	6.434614	chr5	131224178	131224746	LINE|L2|L2	+	chr5	131209413	131224589	STRG.44659.1	-	131209413,131223948	131210153,131224589	0.782313
transverse_colon_female_adult_53_years	chr1	211271740	211271741	211271740	+	RAMPAGE_only	4	4	7	0.337834	2.584963	chr1	211271521	211272063	LINE|RTE-BovB|MamRTE1	+	chr1	211259974	211316385	RCOR3|ENST00000367005.8	+	211259974,211271231,211274209,211276256,211278116,211279237,211289177,211295675,211304082,211312719,211313423	211260164,211271309,211274262,211276418,211278241,211279316,211289396,211295753,211304140,211312961,211316385	0.571429
transverse_colon_female_adult_53_years	chr2	168932399	168932410	168932399	-	RAMPAGE_only	3	3	11	0.530881	3.095795	chr2	168932007	168932368	LINE|L1|L1PA7	-	chr2	168922981	168970170	ABCB11|ENST00000649448.1	-	168922981,168924656,168927155,168929291,168930664,168932376,168935183,168936229,168944604,168944856,168957963,168964205,168968426,168969349,168970044	168923822,168924803,168927362,168929351,168930862,168932533,168935425,168936433,168944766,168944961,168958128,168964308,168968490,168969551,168970170	1.000000
transverse_colon_female_adult_53_years	chr16	68834299	68834398	68834330	+	RAMPAGE_only	11	16	60	2.895716	4.760620	chr16	68834273	68834516	SINE|Alu|AluJr	-	chr16	68737311	68835030	CDH1|ENST00000566612.5	+	68737311,68738296,68801669,68808423,68808692,68810196,68811683,68812134,68813312,68815514,68822000,68823398,68828173,68829653,68833289	68737463,68738411,68801893,68808567,68808848,68810341,68811859,68812263,68813495,68815759,68822225,68823626,68828304,68829797,68835030	0.933333
transverse_colon_female_adult_53_years	chr19	20423696	20423704	20423701	-	RAMPAGE_only	5	5	17	0.820453	2.524397	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.823529
transverse_colon_female_adult_53_years	chr7	100349884	100349885	100349884	+	RAMPAGE_only	11	11	11	0.530881	3.095795	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100336242	100356721	STRG.60474.2	+	100336242,100338178,100338772,100345864,100349716,100351251,100352563,100352996,100353209,100353372,100355142,100355691	100336337,100338264,100338889,100345968,100349887,100352478,100352914,100353123,100353270,100353483,100355240,100356721	1.000000
transverse_colon_female_adult_53_years	chr10	102449836	102449845	102449836	+	High_confidence	4	4	15	0.723929	3.664498	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.666667
transverse_colon_female_adult_53_years	chrX	20204040	20204050	20204049	-	RAMPAGE_only	6	6	15	0.723929	3.521641	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.933333
transverse_colon_female_adult_53_years	chr3	197913295	197913296	197913295	-	High_confidence	9	10	14	0.675667	3.392747	chr3	197913188	197913307	SINE|Alu|FLAM_A	-	chr3	197889077	197913284	IQCG|ENST00000478903.5	-	197889077,197891445,197892627,197912674	197889714,197891547,197892759,197913284	0.928571
transverse_colon_female_adult_53_years	chr16	19393734	19393735	19393734	-	High_confidence	171	173	183	8.831934	5.872336	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19392212	19393468	AC130456.7|ENST00000623838.1	-	19392212	19393468	0.612022
transverse_colon_female_adult_53_years	chr1	1655395	1655451	1655410	-	RAMPAGE_only	14	23	44	2.123525	5.019061	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.772727
transverse_colon_female_adult_53_years	chr1	75375885	75375886	75375885	-	High_confidence	10	10	12	0.579143	3.459432	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75222417	75376272	STRG.4091.1	-	75222417,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75376272	0.916667
transverse_colon_female_adult_53_years	chr18	57648049	57648079	57648050	-	RAMPAGE_only	8	11	39	1.882215	4.099129	chr18	57647996	57648285	SINE|Alu|AluSx1	-	chr18	57646442	57801988	ATP8B1|ENST00000642462.1	-	57646442,57650366,57652033,57652483,57653991,57655193,57659742,57661173,57662482,57667091,57668428,57669317,57671467,57674833,57684035,57685071,57688298,57691806,57694581,57695170,57695449,57697617,57697794,57701038,57701214,57704554,57706489,57731626,57801931	57648712,57650497,57652172,57652729,57654075,57655417,57659815,57661462,57662615,57667167,57668540,57669482,57671580,57675022,57684192,57685115,57688507,57691997,57694670,57695329,57695532,57697688,57697867,57701100,57701313,57704668,57706587,57731832,57801988	1.000000
transverse_colon_female_adult_53_years	chrX	53576956	53576969	53576959	-	High_confidence	4	5	10	0.482619	2.947703	chrX	53576946	53576998	LTR|ERV1|LTR43-int	+	chrX	53567690	53577447	STRG.126210.11	-	53567690,53569615,53573749,53575154	53568874,53569827,53573964,53577447	0.900000
transverse_colon_female_adult_53_years	chr13	24925924	24925963	24925942	+	High_confidence	4	7	21	1.013501	3.880180	chr13	24925661	24926143	LTR|ERVK|LTR22A	+	chr13	24925951	24933927	STRG.91490.1	+	24925951,24933002,24933745	24926194,24933135,24933927	0.666667
transverse_colon_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	54	54	57	2.750930	4.182432	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.894737
transverse_colon_female_adult_53_years	chr17	48634303	48634338	48634337	-	RAMPAGE_only	21	29	50	2.413097	4.808367	chr17	48634187	48634487	SINE|Alu|AluSx3	-	chr17	48621158	48647023	STRG.110493.1	-	48621158,48633513,48639085	48623135,48636773,48647023	1.000000
transverse_colon_female_adult_53_years	chr3	189121289	189121315	189121294	+	RAMPAGE_only	10	10	26	1.254810	3.426616	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.807692
transverse_colon_female_adult_53_years	chr21	22062521	22062540	22062530	-	High_confidence	4	5	17	0.820453	3.499228	chr21	22062350	22062974	LINE|L2|L2a	+	chr21	22025993	22062693	STRG.121196.3	-	22025993,22042192,22062008	22041435,22043087,22062693	1.000000
transverse_colon_female_adult_53_years	chr4	81164921	81164928	81164921	+	High_confidence	12	12	22	1.061763	3.621928	chr4	81164812	81164959	LINE|CR1|X6B_LINE	+	chr4	81164797	81167250	STRG.35127.1	+	81164797	81167250	0.681818
transverse_colon_female_adult_53_years	chr19	49086488	49086547	49086520	+	High_confidence	20	21	60	2.895716	5.056565	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.933333
transverse_colon_female_adult_53_years	chr1	184568398	184568409	184568398	+	High_confidence	5	5	10	0.482619	2.921928	chr1	184568204	184568449	LINE|L1|L1MB3	-	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	1.000000
transverse_colon_female_adult_53_years	chr8	99892036	99892057	99892056	-	RAMPAGE_only	477	477	766	36.968641	5.078542	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.985640
transverse_colon_female_adult_53_years	chr1	113432147	113432173	113432160	+	RAMPAGE_only	3	3	8	0.386095	2.807355	chr1	113431382	113432217	LINE|L1|L1M5	+	chr1	113416469	113484613	STRG.6180.6	+	113416469,113425561,113480351	113424857,113480331,113484613	0.875000
transverse_colon_female_adult_53_years	chr3	11225963	11226026	11226025	+	High_confidence	76	78	293	14.140746	6.391808	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.668942
transverse_colon_female_adult_53_years	chr17	48199418	48199419	48199418	-	RAMPAGE_only	4	4	7	0.337834	2.521641	chr17	48199174	48199607	LINE|L2|L2c	+	chr17	48180091	48185179	SKAP1|ENST00000579336.1	-	48180091,48182393,48184722	48180248,48182457,48185179	0.714286
transverse_colon_female_adult_53_years	chr1	162419798	162419843	162419842	+	High_confidence	17	26	88	4.247050	5.552904	chr1	162419359	162419942	LTR|ERVK|LTR14C	+	chr1	162419828	162420557	STRG.7748.1	+	162419828	162420557	0.897727
transverse_colon_female_adult_53_years	chr8	29735252	29735275	29735252	-	High_confidence	9	9	20	0.965239	3.892407	chr8	29735013	29735262	SINE|MIR|MIR	-	chr8	29673921	29735223	LINC00589|ENST00000518623.5	-	29673921,29677909,29726155,29735170	29674443,29678004,29726423,29735223	0.850000
transverse_colon_female_adult_53_years	chr11	65429713	65429914	65429824	+	RAMPAGE_only	10	14	149	7.191028	6.020066	chr11	65429592	65429862	LINE|L1|L1ME4a	-	chr11	65423637	65445540	STRG.81845.2	+	65423637,65426060,65439492	65425737,65439402,65445540	0.993289
transverse_colon_female_adult_53_years	chrX	73824167	73824226	73824192	-	RAMPAGE_only	5	5	28	1.351334	4.208966	chrX	73824094	73824164	SINE|MIR|MIRc	-	chrX	73823336	73829691	XIST|ENST00000649757.1	-	73823336,73829067	73827984,73829691	0.964286
transverse_colon_female_adult_53_years	chr2	110780695	110780715	110780697	+	RAMPAGE_only	4	7	14	0.675667	3.700440	chr2	110779462	110780748	LINE|L1|L1ME2	+	chr2	110732633	110888017	ACOXL|ENST00000340561.8	+	110732633,110768367,110784731,110793649,110794075,110798609,110799013,110801651,110805262,110841370,110886780	110732774,110768464,110784815,110793736,110794174,110798724,110799100,110801724,110805395,110841405,110888017	0.571429
transverse_colon_female_adult_53_years	chr17	50271487	50271488	50271487	+	High_confidence	13	19	19	0.916977	3.787144	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
transverse_colon_female_adult_53_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	10	10	11	0.530881	3.321928	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86441460	86492716	KDM3A|ENST00000409064.5	+	86441460,86442017,86449806,86451102,86455084,86456441,86456804,86456982,86464052,86466371,86470203,86474775,86477876,86478169,86478607,86480166,86481929,86482457,86483986,86484941,86485728,86489317,86489519,86490880,86491140,86492038	86441488,86442233,86449962,86451213,86455187,86456566,86456877,86457071,86464216,86466883,86470408,86474990,86478029,86478265,86478735,86480362,86482102,86482694,86484158,86485029,86485859,86489437,86489659,86491057,86491275,86492716	0.818182
transverse_colon_female_adult_53_years	chr9	113375487	113375525	113375524	-	High_confidence	2	2	8	0.386095	2.521641	chr9	113375358	113375529	SINE|MIR|MIR3	-	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	0.875000
transverse_colon_female_adult_53_years	chr2	113625664	113625675	113625674	-	RAMPAGE_only	4	4	11	0.530881	3.321928	chr2	113625528	113625691	LINE|L2|L2	+	chr2	113610501	113627040	RPL23AP7|ENST00000416673.6	-	113610501,113625608,113626829	113612247,113625729,113627040	0.909091
transverse_colon_female_adult_53_years	chr14	55352714	55352730	55352729	+	RAMPAGE_only	6	8	15	0.723929	3.056565	chr14	55352765	55352941	DNA|TcMar-Mariner|MARNA	+	chr14	55271302	55353609	FBXO34|ENST00000313833.4	+	55271302,55350380	55271537,55353609	0.933333
transverse_colon_female_adult_53_years	chr15	101295822	101295839	101295838	+	High_confidence	5	5	15	0.723929	3.456565	chr15	101295782	101295880	LINE|L1|L1ME3	-	chr15	101295801	101296654	STRG.103702.1	+	101295801	101296654	0.733333
transverse_colon_female_adult_53_years	chr18	34709357	34709374	34709369	+	High_confidence	4	4	13	0.627405	3.700440	chr18	34709150	34709395	LINE|L2|L2c	-	chr18	34710212	34820868	STRG.112976.2	+	34710212,34755975,34765960,34794036,34806218,34811958,34815908,34818163,34820790	34710445,34756043,34766041,34794250,34806304,34812113,34816014,34818330,34820868	0.692308
transverse_colon_female_adult_53_years	chr1	2048507	2048551	2048537	+	RAMPAGE_only	10	10	61	2.943978	4.812822	chr1	2048414	2048562	LINE|L2|L2a	-	chr1	2050469	2185395	PRKCZ|ENST00000378567.7	+	2050469,2055440,2056483,2059540,2135261,2144209,2146026,2148871,2150789,2155994,2169517,2172054,2172300,2173896,2174753,2175223,2184582,2184921	2050701,2055562,2056573,2059591,2135347,2144341,2146108,2148924,2150978,2156092,2169604,2172190,2172388,2174016,2174833,2175313,2184698,2185395	0.901639
transverse_colon_female_adult_53_years	chr16	19430443	19430573	19430443	+	RAMPAGE_only	4	5	37	1.785692	4.614859	chr16	19430397	19430533	LINE|RTE-X|L4_B_Mam	+	chr16	19439268	19498277	STRG.105493.6	+	19439268,19444080,19449541,19460234,19463279,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19490394,19492149,19494261,19497120,19497919	19440826,19444250,19449631,19460334,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487326,19490568,19492228,19494366,19497163,19498277	0.918919
transverse_colon_female_adult_53_years	chr19	5846442	5846483	5846442	-	RAMPAGE_only	7	7	21	1.013501	3.576618	chr19	5846396	5846476	LINE|L1|L1MB8	+	chr19	5844539	5848905	FUT3|ENST00000587048.1	-	5844539,5846425,5848833	5844851,5846618,5848905	0.761905
transverse_colon_female_adult_53_years	chr6	128241293	128241324	128241308	-	High_confidence	3	3	13	0.627405	3.238901	chr6	128241276	128241454	DNA|hAT-Charlie|MER5A	+	chr6	128184431	128241299	PTPRK|ENST00000368205.7	-	128184431,128218921,128240034,128241222	128184725,128219096,128240150,128241299	1.000000
transverse_colon_female_adult_53_years	chr4	102431247	102431249	102431247	-	High_confidence	3	5	8	0.386095	2.521641	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.875000
transverse_colon_female_adult_53_years	chr4	4542465	4542474	4542465	+	High_confidence	6	7	18	0.868715	2.816308	chr4	4542511	4542647	SINE|MIR|MIRb	+	chr4	4542417	4545060	STX18-AS1|ENST00000514763.1	+	4542417,4544737	4542625,4545060	0.833333
transverse_colon_female_adult_53_years	chr14	103529009	103529076	103529027	-	High_confidence	6	6	40	1.930477	4.153702	chr14	103528849	103528983	SINE|Alu|AluJo	-	chr14	103525009	103529072	AL133367.1|ENST00000568177.1	-	103525009	103529072	0.775000
transverse_colon_female_adult_53_years	chr12	6493553	6493591	6493590	-	High_confidence	18	31	67	3.233550	5.294246	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	0.985075
transverse_colon_female_adult_53_years	chr13	75798998	75798999	75798998	+	RAMPAGE_only	6	6	9	0.434357	2.725481	chr13	75798751	75799243	LINE|RTE-X|L4_C_Mam	+	chr13	75804173	75805760	LMO7|ENST00000526371.1	+	75804173,75805478	75804541,75805760	0.777778
transverse_colon_female_adult_53_years	chr4	99218782	99218811	99218810	-	High_confidence	3	3	10	0.482619	3.321928	chr4	99218562	99218890	LINE|L2|L2b	+	chr4	99202637	99219235	ADH6|ENST00000394897.5	-	99202637,99208667,99210081,99210414,99213605,99216160,99219134	99205063,99208928,99210298,99210502,99213747,99216262,99219235	0.700000
transverse_colon_female_adult_53_years	chr17	49120354	49120413	49120412	+	High_confidence	7	7	38	1.833953	4.334736	chr17	49120136	49120464	LINE|L2|L2c	-	chr17	49120309	49176840	STRG.110527.3	+	49120309,49141246,49142034,49152799,49156565,49159036,49160554,49164087,49166113,49168680,49169522	49120446,49141447,49142172,49152906,49156603,49159217,49160641,49164275,49166254,49168900,49176840	0.947368
transverse_colon_female_adult_53_years	chr1	84297935	84297941	84297935	-	RAMPAGE_only	186	197	283	13.658127	5.906220	chr1	84297928	84298031	SINE|MIR|MIRc	+	chr1	84288423	84299244	STRG.4865.1	-	84288423	84299244	0.954064
transverse_colon_female_adult_53_years	chr1	1721596	1721638	1721637	-	High_confidence	3	6	15	0.723929	3.521641	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.866667
transverse_colon_female_adult_53_years	chr19	42516964	42517000	42516964	-	RAMPAGE_only	3	6	18	0.868715	3.807764	chr19	42516941	42518139	LINE|L1|L1MB3	+	chr19	42509206	42528481	CEACAM1|ENST00000599389.1	-	42509206,42510888,42512349,42516772,42521266,42521923,42527040,42528310	42509228,42510920,42512479,42516865,42521521,42522202,42527400,42528481	0.555556
transverse_colon_female_adult_53_years	chr11	114638898	114638946	114638945	-	RAMPAGE_only	8	8	22	1.061763	4.121928	chr11	114633465	114639620	LINE|L1|L1PA3	-	chr11	114633589	114651608	STRG.84086.19	-	114633589,114648240,114651162	114639619,114648345,114651608	0.909091
transverse_colon_female_adult_53_years	chr11	112150589	112150622	112150621	-	High_confidence	2	2	8	0.386095	2.807355	chr11	112150354	112150650	LINE|L2|L2c	+	chr11	112143256	112151073	IL18|ENST00000525547.5	-	112143256,112148602,112150071	112143817,112148736,112151073	0.875000
transverse_colon_female_adult_53_years	chr19	58312242	58312257	58312242	+	RAMPAGE_only	4	4	8	0.386095	2.750000	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.500000
transverse_colon_female_adult_53_years	chr10	46269609	46269624	46269609	-	High_confidence	10	11	26	1.254810	4.209867	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.769231
transverse_colon_female_adult_53_years	chr11	76920089	76920139	76920089	+	RAMPAGE_only	7	7	57	2.750930	5.296464	chr11	76919910	76920629	LTR|ERVL|LTR41	+	chr11	76860942	77021545	ACER3|ENST00000531352.5	+	76860942,76868119,76926556,76958978,76976288,76985642,76990538,76998762,77015015,77016674,77019730,77020273	76861079,76868156,76926667,76959031,76976341,76985724,76990574,76998821,77015117,77016779,77019776,77021545	0.508772
transverse_colon_female_adult_53_years	chr12	121582278	121582279	121582278	-	RAMPAGE_only	5	5	7	0.337834	2.807355	chr12	121582118	121582290	SINE|MIR|MIRb	-	chr12	121429095	121581015	KDM2B|NM_032590.4	-	121429095,121439856,121440815,121441069,121442156,121442991,121443679,121444011,121444449,121445274,121453119,121494578,121509566,121513275,121520984,121532805,121534496,121548876,121549459,121574546,121575780,121578801,121580785	121430469,121440075,121440977,121441233,121442836,121443030,121443793,121444272,121444536,121445418,121453344,121494665,121510039,121513402,121521100,121532959,121534590,121548983,121549638,121574593,121575859,121578946,121581015	0.714286
transverse_colon_female_adult_53_years	chr12	85317998	85318015	85317998	+	High_confidence	4	4	8	0.386095	2.750000	chr12	85312419	85318459	LINE|L1|L1PA2	-	chr12	85318059	85342912	AC131532.1|ENST00000555596.1	+	85318059,85318957,85342471	85318115,85318979,85342912	0.875000
transverse_colon_female_adult_53_years	chr17	42980374	42980396	42980395	-	High_confidence	22	22	38	1.833953	4.596483	chr17	42980326	42980440	LINE|L2|L2a	+	chr17	42968725	42980349	PTGES3L|ENST00000462157.5	-	42968725,42970288,42971606,42979169,42979377	42969186,42970342,42971696,42979268,42980349	0.947368
transverse_colon_female_adult_53_years	chr1	59029931	59029979	59029940	-	High_confidence	14	14	36	1.737430	4.593429	chr1	59029799	59029983	SINE|MIR|MIRc	+	chr1	59011489	59029945	STRG.3408.1	-	59011489,59012905,59029695	59012049,59012977,59029945	0.833333
transverse_colon_female_adult_53_years	chr2	201122588	201122590	201122589	+	RAMPAGE_only	3	5	7	0.337834	2.521641	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201118663	201160455	CFLAR|ENST00000439154.6	+	201118663,201129728,201133028,201135971,201140356,201142644,201145377,201149002,201149753,201160431	201118901,201130146,201133134,201136107,201140439,201142762,201145432,201149052,201149835,201160455	0.571429
transverse_colon_female_adult_53_years	chr7	134527596	134527597	134527596	+	High_confidence	2686	2736	3148	151.928566	7.655922	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.974587
transverse_colon_female_adult_53_years	chr1	83182456	83182474	83182473	-	High_confidence	6	6	10	0.482619	3.121928	chr1	83182174	83188201	LINE|L1|L1PA2	+	chr1	83180863	83182593	STRG.4500.2	-	83180863	83182593	0.900000
transverse_colon_female_adult_53_years	chr1	148900909	148900910	148900909	+	RAMPAGE_only	7	7	10	0.482619	2.725481	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148889783	148932725	PDE4DIP|ENST00000612094.1	+	148889783,148929196,148932112	148889894,148931923,148932725	0.700000
transverse_colon_female_adult_53_years	chrX	71198191	71198196	71198195	-	High_confidence	9	9	17	0.820453	3.452820	chrX	71198068	71198187	SINE|MIR|MIR3	-	chrX	71183558	71198175	AL590764.1|ENST00000450860.1	-	71183558,71197908	71184017,71198175	0.823529
transverse_colon_female_adult_53_years	chr11	87359622	87359647	87359639	+	High_confidence	5	5	21	1.013501	3.684184	chr11	87359683	87359924	LTR|ERVL|LTR18A	+	chr11	87359637	87372930	STRG.83056.1	+	87359637,87362356,87372791	87359950,87362476,87372930	0.761905
transverse_colon_female_adult_53_years	chr8	2726956	2726963	2726962	+	High_confidence	18	19	47	2.268311	4.994864	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.659574
transverse_colon_female_adult_53_years	chr6	128492265	128492358	128492303	-	RAMPAGE_only	4	5	36	1.737430	4.278352	chr6	128492117	128492389	LINE|L2|L2c	+	chr6	128477749	128505297	STRG.52945.14	-	128477749,128493611	128493589,128505297	0.944444
transverse_colon_female_adult_53_years	chr6	142308179	142308186	142308179	+	RAMPAGE_only	5	5	11	0.530881	3.121928	chr6	142308138	142308365	SINE|MIR|MIRb	-	chr6	142302625	142367890	ADGRG6|ENST00000435011.6	+	142302625,142309543,142367565	142302739,142309644,142367890	0.909091
transverse_colon_female_adult_53_years	chr17	28525381	28525382	28525381	+	RAMPAGE_only	8	8	12	0.579143	2.663533	chr17	28525111	28525398	DNA|TcMar-Tigger|Tigger19b	+	chr17	28523940	28538896	FOXN1|ENST00000226247.2	+	28523940,28524502,28527250,28529093,28530748,28534330,28534706,28537116	28524092,28524967,28527361,28529224,28530845,28534538,28535198,28538896	0.666667
transverse_colon_female_adult_53_years	chr11	57814118	57814131	57814118	+	High_confidence	6	8	13	0.627405	3.238901	chr11	57814032	57814187	SINE|Alu|AluJr4	+	chr11	57813916	57815481	CTNND1|ENST00000525821.1	+	57813916,57815393	57814373,57815481	0.846154
transverse_colon_female_adult_53_years	chr14	95190285	95190329	95190285	-	RAMPAGE_only	3	3	11	0.530881	3.321928	chr14	95190276	95190420	SINE|MIR|MIR3	+	chr14	95185116	95193917	STRG.98379.7	-	95185116,95187480,95193848	95187436,95191732,95193917	0.909091
transverse_colon_female_adult_53_years	chr5	149983618	149983681	149983618	+	RAMPAGE_only	20	25	108	5.212289	5.457971	chr5	149983581	149983876	SINE|Alu|AluJr	-	chr5	149960784	149987405	STRG.45782.5	+	149960784,149977627	149960979,149987405	1.000000
transverse_colon_female_adult_53_years	chr20	37343775	37343806	37343775	+	High_confidence	2	2	6	0.289572	2.584963	chr20	37343702	37343880	LINE|L2|L2c	-	chr20	37344684	37382787	SRC|ENST00000497734.5	+	37344684,37365203,37382618	37344887,37365277,37382787	0.500000
transverse_colon_female_adult_53_years	chr3	134485415	134485490	134485443	-	High_confidence	5	5	28	1.351334	3.623517	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.892857
transverse_colon_female_adult_53_years	chr17	35085070	35085071	35085070	-	RAMPAGE_only	5	6	7	0.337834	2.584963	chr17	35085029	35085098	DNA|hAT-Charlie|MER5A	+	chr17	35012048	35089194	STRG.109530.4	-	35012048,35016369,35017522,35021370,35026373,35089104	35012149,35016580,35017606,35021781,35026561,35089194	0.571429
transverse_colon_female_adult_53_years	chr4	69756719	69756785	69756743	-	RAMPAGE_only	4	4	19	0.916977	3.836592	chr4	69756339	69756752	LTR|ERVL|MLT2B4	+	chr4	69726093	69773510	STRG.34555.3	-	69726093,69730500,69733412,69734137,69749720,69754669,69755069,69760458,69773427	69727200,69730681,69733507,69734264,69749818,69754798,69758489,69760571,69773510	0.947368
transverse_colon_female_adult_53_years	chr2	47342962	47342963	47342962	-	RAMPAGE_only	9	9	11	0.530881	2.845351	chr2	47342845	47343148	SINE|Alu|AluSp	-	chr2	47341970	47344050	STRG.14479.1	-	47341970	47344050	0.636364
transverse_colon_female_adult_53_years	chr8	117954935	117954968	117954967	-	RAMPAGE_only	3	3	7	0.337834	2.521641	chr8	117954749	117955568	LTR|ERVL|MER21C	-	chr8	117892721	117997250	STRG.67673.2	-	117892721,117959338,117968876	117959269,117968525,117997250	1.000000
transverse_colon_female_adult_53_years	chr3	135965673	135965762	135965723	+	High_confidence	49	71	426	20.559584	6.623385	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965743	136010201	STRG.29814.5	+	135965743,136001058	135966628,136010201	0.957746
transverse_colon_female_adult_53_years	chr1	180270112	180270143	180270133	+	RAMPAGE_only	3	3	12	0.579143	3.418296	chr1	180270174	180270263	SINE|MIR|MIR	+	chr1	180248284	180271894	LHX4|ENST00000561113.1	+	180248284,180266391,180271379,180271834	180248469,180266594,180271534,180271894	0.583333
transverse_colon_female_adult_53_years	chr21	34512187	34512210	34512209	-	High_confidence	8	8	14	0.675667	3.664498	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.714286
transverse_colon_female_adult_53_years	chr9	22113500	22113501	22113500	+	High_confidence	22	22	27	1.303072	4.363713	chr9	22113274	22113535	LTR|ERVL-MaLR|MLT1E1	-	chr9	22113209	22120713	STRG.69776.7	+	22113209,22120199	22118767,22120713	0.925926
transverse_colon_female_adult_53_years	chr21	41836887	41836888	41836887	-	High_confidence	4	4	7	0.337834	2.521641	chr21	41836880	41837100	LINE|RTE-X|L4_B_Mam	+	chr21	41825976	41836894	PRDM15|ENST00000489661.5	-	41825976,41828165,41835436,41836112,41836467	41826054,41828333,41835524,41836207,41836894	0.857143
transverse_colon_female_adult_53_years	chr4	184382288	184382295	184382294	-	RAMPAGE_only	82	83	166	8.011481	5.955247	chr4	184382179	184382738	LTR|ERVL|LTR67B	+	chr4	184378524	184383668	STRG.39311.3	-	184378524,184382133	184379129,184383668	0.584337
transverse_colon_female_adult_53_years	chr1	83182566	83182607	83182566	-	High_confidence	3	3	12	0.579143	2.617492	chr1	83182174	83188201	LINE|L1|L1PA2	+	chr1	83180863	83182593	STRG.4500.2	-	83180863	83182593	1.000000
transverse_colon_female_adult_53_years	chr20	33813222	33813223	33813222	+	RAMPAGE_only	8	8	12	0.579143	3.459432	chr20	33812865	33813547	LINE|L2|L2a	-	chr20	33811303	33854367	CHMP4B|NM_176812.4	+	33811303,33848466,33850951,33852076,33853495	33811658,33848644,33851066,33852203,33854367	0.750000
transverse_colon_female_adult_53_years	chr2	199428822	199428896	199428830	-	RAMPAGE_only	13	14	36	1.737430	3.888542	chr2	199428751	199429035	SINE|Alu|AluJo	+	chr2	199408632	199456088	STRG.21544.11	-	199408632,199423581,199455868	199423504,199433514,199456088	0.972222
transverse_colon_female_adult_53_years	chr1	43525091	43525092	43525091	+	High_confidence	1328	1332	1802	86.968004	7.342629	chr1	43524527	43525317	LINE|L2|L2c	-	chr1	43525186	43553519	PTPRF|ENST00000496043.5	+	43525186,43528656,43538197,43545030,43553491	43525257,43528756,43538277,43545166,43553519	0.836848
transverse_colon_female_adult_53_years	chr13	113187343	113187344	113187343	-	High_confidence	4	4	6	0.289572	2.584963	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	1.000000
transverse_colon_female_adult_53_years	chr7	128622482	128622518	128622517	+	RAMPAGE_only	2	2	8	0.386095	2.750000	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128606250	128626473	STRG.61861.5	+	128606250,128609486,128615859,128617867,128619045,128622478,128622978,128623574,128625796,128626294	128608213,128609579,128615970,128617977,128619177,128622694,128623132,128623781,128625855,128626473	1.000000
transverse_colon_female_adult_53_years	chrX	114059045	114059046	114059045	-	High_confidence	38	38	52	2.509621	4.897987	chrX	114059021	114059467	LTR|ERV1|LTR2	-	chrX	113942254	114059285	STRG.128264.4	-	113942254,114059003	113963599,114059285	0.538462
transverse_colon_female_adult_53_years	chr4	42313844	42313853	42313844	+	High_confidence	25	28	40	1.930477	4.484184	chr4	42313410	42313975	LTR|ERV1|LTR10F	+	chr4	42313850	42319261	STRG.34123.1	+	42313850,42317866	42314221,42319261	0.725000
transverse_colon_female_adult_53_years	chr11	65438629	65438929	65438714	+	RAMPAGE_only	29	32	395	19.063464	6.443811	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65423637	65445540	STRG.81845.2	+	65423637,65426060,65439492	65425737,65439402,65445540	0.979747
transverse_colon_female_adult_53_years	chr11	77175226	77175303	77175302	+	High_confidence	11	11	39	1.882215	4.487468	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175243	77197583	STRG.82534.1	+	77175243,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353,77197480	77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194524,77197583	1.000000
transverse_colon_female_adult_53_years	chr7	12802617	12802628	12802617	+	High_confidence	4	4	14	0.675667	3.334679	chr7	12802409	12802673	LTR|ERVL|LTR33	+	chr7	12802017	12806007	STRG.55632.1	+	12802017	12806007	0.785714
transverse_colon_female_adult_53_years	chr4	152412488	152412529	152412528	-	High_confidence	13	15	33	1.592644	4.657882	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
transverse_colon_female_adult_53_years	chr12	2798793	2798808	2798807	+	High_confidence	7	8	12	0.579143	2.845351	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.916667
transverse_colon_female_adult_53_years	chrX	114059117	114059158	114059117	-	High_confidence	4	4	10	0.482619	2.947703	chrX	114059021	114059467	LTR|ERV1|LTR2	-	chrX	113942254	114059285	STRG.128264.4	-	113942254,114059003	113963599,114059285	0.800000
transverse_colon_female_adult_53_years	chr14	46734392	46734432	46734396	-	High_confidence	117	131	418	20.173488	6.937777	chr14	46733820	46734635	LINE|L1|L1MCb	+	chr14	46591465	46734448	STRG.95669.4	-	46591465,46615116,46617696,46623607,46625052,46625432,46655193,46655997,46660309,46734337	46597489,46615202,46617792,46623739,46625235,46625572,46655262,46656064,46660467,46734448	0.576555
transverse_colon_female_adult_53_years	chr1	75376267	75376289	75376268	-	High_confidence	5	8	13	0.627405	3.334679	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75222417	75376272	STRG.4091.1	-	75222417,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75376272	0.923077
transverse_colon_female_adult_53_years	chr9	22113544	22113547	22113546	+	High_confidence	112	232	253	12.210269	6.712320	chr9	22113591	22113733	SINE|MIR|MIRc	+	chr9	22113677	22121097	CDKN2B-AS1|ENST00000422420.1	+	22113677,22120199,22120503	22113799,22120410,22121097	0.664032
transverse_colon_female_adult_53_years	chr2	69567136	69567163	69567162	-	RAMPAGE_only	11	13	31	1.496120	4.542748	chr2	69566977	69567521	LINE|L2|L2b	+	chr2	69457996	69544509	STRG.15454.2	-	69457996,69505568,69507420,69509230,69514470,69518953,69520833,69525032,69527215,69530007,69530624,69532040,69542522,69544435	69466551,69505673,69507578,69509460,69514749,69519240,69520988,69525112,69527319,69530140,69530706,69532162,69542665,69544509	0.677419
transverse_colon_female_adult_53_years	chr11	65382789	65382792	65382789	-	High_confidence	4	4	8	0.386095	2.521641	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.875000
transverse_colon_female_adult_53_years	chr4	70676931	70676961	70676950	-	RAMPAGE_only	35	36	159	7.673647	5.441757	chr4	70676811	70677107	SINE|Alu|AluSz	-	chr4	70657268	70681817	JCHAIN|ENST00000470866.1	-	70657268,70662091,70666426,70681777	70657291,70662215,70666514,70681817	0.559748
transverse_colon_female_adult_53_years	chr21	22041413	22041414	22041413	-	RAMPAGE_only	6	6	9	0.434357	2.641604	chr21	22039560	22041431	LINE|L1|L1PA13	-	chr21	22025993	22062693	STRG.121196.1	-	22025993,22042944,22062008,22062553	22041435,22043087,22062165,22062693	0.888889
transverse_colon_female_adult_53_years	chr17	39187625	39187657	39187656	-	High_confidence	20	20	74	3.571383	5.438919	chr17	39187650	39187724	LINE|L1|L1ME3B	+	chr17	39184324	39187439	CACNB1|ENST00000577582.5	-	39184324,39184783,39186495,39186792,39187230	39184383,39184864,39186572,39186929,39187439	0.648649
transverse_colon_female_adult_53_years	chr9	26346994	26347020	26346994	-	High_confidence	13	13	47	2.268311	4.226615	chr9	26346323	26346968	LINE|L1|L1PB1	-	chr9	26329098	26346989	STRG.69989.1	-	26329098,26346246,26346687	26329208,26346288,26346989	0.851064
transverse_colon_female_adult_53_years	chr9	123055004	123055005	123055004	+	RAMPAGE_only	4	4	7	0.337834	2.807355	chr9	123054433	123055214	LINE|L1|L1MC3	-	chr9	123033666	123074317	RABGAP1|ENST00000475607.1	+	123033666,123065347,123070349,123073551,123074284	123033742,123065601,123070424,123073677,123074317	0.571429
transverse_colon_female_adult_53_years	chr16	761096	761118	761110	+	High_confidence	3	3	14	0.675667	2.968919	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.857143
transverse_colon_female_adult_53_years	chr3	51986165	51986188	51986171	+	High_confidence	26	48	109	5.260551	5.675903	chr3	51986054	51986192	SINE|MIR|MIR1_Amn	-	chr3	51986209	51987453	ACY1|ENST00000464587.2	+	51986209,51986414,51986604,51986987,51987146,51987308	51986331,51986504,51986661,51987061,51987196,51987453	0.844037
transverse_colon_female_adult_53_years	chr3	114624940	114625007	114624984	-	High_confidence	9	9	36	1.737430	4.629004	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.666667
transverse_colon_female_adult_53_years	chr2	230925215	230925265	230925264	-	High_confidence	3	3	9	0.434357	2.947703	chr2	230925193	230925329	SINE|MIR|MIR3	+	chr2	230907317	230925226	GPR55|ENST00000444078.5	-	230907317,230909621,230925167	230908310,230911096,230925226	0.666667
transverse_colon_female_adult_53_years	chr11	112152438	112152587	112152513	-	RAMPAGE_only	15	15	111	5.357075	5.636959	chr11	112152486	112152914	LTR|ERVL-MaLR|MLT1J	+	chr11	112143260	112164074	STRG.83899.3	-	112143260,112148602,112150071,112154974,112163905	112143817,112148736,112153603,112155061,112164074	1.000000
transverse_colon_female_adult_53_years	chr11	307580	307581	307580	-	RAMPAGE_only	8	8	8	0.386095	2.750000	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	0.625000
transverse_colon_female_adult_53_years	chr1	90219732	90219775	90219732	+	High_confidence	91	95	270	13.030722	7.138474	chr1	90218768	90219842	LINE|L1|L1PA3	-	chr1	90219671	90285873	STRG.5191.1	+	90219671,90264681,90281560,90283805	90219858,90264734,90281690,90285873	0.574074
transverse_colon_female_adult_53_years	chr20	17888193	17888194	17888193	-	High_confidence	23	24	33	1.592644	4.597276	chr20	17887886	17888373	LTR|ERVL-MaLR|MLT1F	+	chr20	17887362	17888160	AL035045.1|ENST00000425405.1	-	17887362,17887970	17887804,17888160	0.545455
transverse_colon_female_adult_53_years	chr1	27301454	27301458	27301454	+	RAMPAGE_only	5	5	10	0.482619	2.721928	chr1	27301504	27301735	SINE|MIR|MIRb	+	chr1	27305013	27306890	WDTC1|ENST00000472249.2	+	27305013,27306185,27306707	27305193,27306450,27306890	0.900000
transverse_colon_female_adult_53_years	chr9	7240281	7240343	7240300	-	High_confidence	18	18	77	3.716169	5.691814	chr9	7240093	7240394	SINE|Alu|AluJr4	+	chr9	7199291	7240368	STRG.69275.1	-	7199291,7239079,7240087	7205091,7239162,7240368	0.649351
transverse_colon_female_adult_53_years	chr17	36002007	36002034	36002007	-	High_confidence	2	4	13	0.627405	3.584963	chr17	36001935	36002541	LTR|ERV1|MER50	-	chr17	35997581	36002038	CCL15|NM_032965.5	-	35997581,35998279,35998865,36001416	35997860,35998391,35998925,36002038	0.923077
transverse_colon_female_adult_53_years	chr12	126772220	126772259	126772258	-	High_confidence	7	7	28	1.351334	4.494680	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126752340	126772262	LINC00944|ENST00000536517.1	-	126752340,126760931,126772078	126752451,126761057,126772262	0.535714
transverse_colon_female_adult_53_years	chr14	24423156	24423190	24423184	+	High_confidence	114	115	522	25.192729	6.436162	chr14	24422287	24423820	LINE|L2|L2b	-	chr14	24423132	24437425	STRG.94572.6	+	24423132,24430713,24432721,24432935,24436071,24436387,24437035	24423476,24432610,24432852,24433032,24436179,24436489,24437425	0.917625
transverse_colon_female_adult_53_years	chr6	12261016	12261057	12261016	+	High_confidence	3	3	14	0.675667	3.180833	chr6	12260893	12261158	LINE|L1|L1M5	+	chr6	12260998	12264364	STRG.47689.1	+	12260998	12264364	0.785714
transverse_colon_female_adult_53_years	chr15	68192368	68192398	68192368	-	RAMPAGE_only	3	5	10	0.482619	2.503258	chr15	68192284	68192438	DNA|hAT-Tip100|Arthur1A	+	chr15	68190704	68205298	CALML4|ENST00000478113.1	-	68190704,68197439,68205244	68194112,68197628,68205298	0.900000
transverse_colon_female_adult_53_years	chr16	21048703	21048704	21048703	-	High_confidence	71	72	79	3.812693	5.869574	chr16	21042672	21048703	LINE|L1|L1PA2	-	chr16	21018967	21048685	STRG.105799.1	-	21018967,21021970,21024595,21027026,21031044,21033973,21036713,21037760,21039851,21042026,21048605	21019869,21022100,21024701,21027127,21031286,21034085,21036848,21037980,21039943,21042203,21048685	0.721519
transverse_colon_female_adult_53_years	chr8	17654922	17654948	17654922	-	High_confidence	2	2	7	0.337834	2.521641	chr8	17654807	17654924	SINE|Alu|AluJo	+	chr8	17647003	17655025	MTUS1|ENST00000523471.5	-	17647003,17649845,17653185,17653424,17654560	17647079,17649962,17653281,17653498,17655025	0.571429
transverse_colon_female_adult_53_years	chrX	55141046	55141047	55141046	+	High_confidence	6	6	9	0.434357	2.750000	chrX	55140760	55141214	LTR|ERVL-MaLR|THE1D	+	chrX	55141036	55153212	STRG.126228.1	+	55141036,55151189,55153077	55141727,55151340,55153212	0.777778
transverse_colon_female_adult_53_years	chr10	5699506	5699523	5699522	+	High_confidence	2	2	6	0.289572	2.584963	chr10	5699528	5699730	LINE|L1|L1M7	+	chr10	5699492	5714207	FAM208B|ENST00000463468.5	+	5699492,5712393,5712822,5714134	5699737,5712539,5712918,5714207	0.500000
transverse_colon_female_adult_53_years	chr12	20504606	20504610	20504609	+	RAMPAGE_only	5	5	9	0.434357	3.000000	chr12	20504432	20504963	LTR|ERVL-MaLR|MLT1D	-	chr12	20392569	20509770	STRG.86262.4	+	20392569,20395554	20395496,20509770	0.777778
transverse_colon_female_adult_53_years	chr18	2800589	2800601	2800600	+	RAMPAGE_only	2	2	7	0.337834	2.584963	chr18	2800506	2800637	SINE|Alu|AluJr	-	chr18	2796098	2801263	SMCHD1|ENST00000583800.1	+	2796098,2796406,2800522	2796107,2796521,2801263	0.571429
transverse_colon_female_adult_53_years	chr12	11017108	11017121	11017108	-	RAMPAGE_only	2	2	9	0.434357	3.000000	chr12	11016700	11017238	LTR|ERVL|HERVL-int	+	chr12	10973283	11047114	PRH1|ENST00000534923.1	-	10973283,11047019	10973721,11047114	0.555556
transverse_colon_female_adult_53_years	chr13	48492652	48492658	48492652	-	High_confidence	2	2	8	0.386095	2.521641	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.625000
transverse_colon_female_adult_53_years	chr7	107874227	107874257	107874252	-	High_confidence	86	89	232	11.196769	5.881131	chr7	107873942	107874331	LTR|ERVL-MaLR|MLT1K	-	chr7	107871768	107874329	STRG.60958.3	-	107871768,107874120	107872607,107874329	0.857759
transverse_colon_female_adult_53_years	chr7	32677729	32677756	32677744	-	RAMPAGE_only	2	2	8	0.386095	2.807355	chr7	32677451	32677853	LTR|ERVL|LTR16	+	chr7	32580938	32719168	DPY19L1P1|NR_036680.1	-	32580938,32581571,32585976,32590878,32593183,32620403,32621012,32623360,32632542,32635251,32639273,32655986,32675931,32676787,32678992,32716717,32719135	32581313,32581664,32586136,32591004,32593306,32620484,32621072,32623439,32632620,32635351,32639365,32656044,32676025,32676908,32679130,32716809,32719168	0.500000
transverse_colon_female_adult_53_years	chr1	71087198	71087199	71087198	-	High_confidence	20	20	26	1.254810	4.213661	chr1	71087151	71087333	LTR|ERVL-MaLR|MLT1O	-	chr1	71086788	71087103	STRG.4105.1	-	71086788	71087103	0.500000
transverse_colon_female_adult_53_years	chr3	58668434	58668457	58668434	-	High_confidence	8	8	15	0.723929	3.323231	chr3	58668148	58668671	LTR|ERV1|MER34A	-	chr3	58667599	58668361	STRG.26450.1	-	58667599	58668361	0.933333
transverse_colon_female_adult_53_years	chr2	170751706	170751707	170751706	+	High_confidence	9	11	13	0.627405	3.392747	chr2	170750015	170751707	LINE|L1|L1MEc	+	chr2	170751804	170752788	EIF2S2P4|ENST00000461070.1	+	170751804	170752788	0.923077
transverse_colon_female_adult_53_years	chr20	17925244	17925250	17925244	-	High_confidence	2	2	7	0.337834	2.584963	chr20	17925239	17925416	SINE|MIR|MIRc	-	chr20	17923943	17925198	STRG.119201.1	-	17923943	17925198	0.714286
transverse_colon_female_adult_53_years	chr15	76576920	76577011	76577010	-	High_confidence	24	26	144	6.949718	6.375455	chr15	76576480	76577164	LINE|L1|L1MA3	+	chr15	76471261	76576985	SCAPER|ENST00000569784.1	-	76471261,76504858,76567269,76574157,76576858	76471335,76504974,76567405,76574284,76576985	0.597222
transverse_colon_female_adult_53_years	chr10	94683469	94683484	94683483	+	High_confidence	19	20	40	1.930477	4.903056	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_000772.2	+	94683493,94687769,94688124,94694916,94706783,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94706960,94720537,94724533,94733438,94736190	1.000000
transverse_colon_female_adult_53_years	chr1	95117531	95117577	95117571	+	High_confidence	6	7	40	1.930477	4.681881	chr1	95117576	95117935	LINE|L1|L1M4b	+	chr1	95117438	95173878	TMEM56|ENST00000456991.5	+	95117438,95121054,95143890,95148701,95150207,95151324,95173815	95117827,95121184,95144056,95148791,95150266,95151419,95173878	0.600000
transverse_colon_female_adult_53_years	chr15	69314390	69314484	69314418	+	High_confidence	19	26	145	6.997980	5.691505	chr15	69314411	69314496	SINE|MIR|MIR3	+	chr15	69314402	69404504	PAQR5|ENST00000561153.5	+	69314402,69337340,69359965,69379882,69384676,69389653,69397467,69399973,69403580	69314794,69337505,69360131,69380010,69384882,69389780,69397564,69400115,69404504	0.800000
transverse_colon_female_adult_53_years	chr4	76592205	76592263	76592205	+	RAMPAGE_only	2	2	13	0.627405	3.084963	chr4	76591820	76592259	LINE|L2|L2a	-	chr4	76586312	76785318	STRG.34825.1	+	76586312,76608750,76710155,76730803,76738760,76749016,76754310,76756448,76759544,76770625,76778808,76782829	76608624,76689702,76710287,76730935,76741926,76749090,76755192,76756937,76759695,76770898,76782789,76785318	0.923077
transverse_colon_female_adult_53_years	chr16	58755976	58755977	58755976	-	RAMPAGE_only	10	10	10	0.482619	3.121928	chr16	58755907	58756071	SINE|MIR|MIRb	+	chr16	58707130	58734357	GOT2|ENST00000245206.9	-	58707130,58709416,58716013,58716662,58718195,58718526,58719195,58722149,58723745,58734139	58708293,58709567,58716179,58716813,58718300,58718688,58719255,58722278,58723902,58734357	1.000000
transverse_colon_female_adult_53_years	chr20	53504313	53504351	53504313	-	High_confidence	4	4	16	0.772191	3.702820	chr20	53503851	53509874	LINE|L1|L1PA2	+	chr20	53453057	53504314	AL354993.2|ENST00000558738.1	-	53453057,53455255,53461468,53504108	53453108,53455440,53461568,53504314	0.562500
transverse_colon_female_adult_53_years	chr12	113334552	113334587	113334552	-	High_confidence	2	2	8	0.386095	2.500000	chr12	113334544	113334646	SINE|MIR|MIRb	+	chr12	113320849	113334613	SLC8B1|ENST00000552613.1	-	113320849,113321055,113321195,113332748,113334442	113320907,113321108,113321348,113332960,113334613	1.000000
transverse_colon_female_adult_53_years	chr19	44914321	44914322	44914321	+	High_confidence	7	7	9	0.434357	2.641604	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.888889
transverse_colon_female_adult_53_years	chr6	36540276	36540278	36540276	-	RAMPAGE_only	29	35	44	2.123525	5.186704	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36547470	STK38|ENST00000229812.7	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540207,36547470	0.954545
transverse_colon_female_adult_53_years	chr18	39800293	39800314	39800297	-	High_confidence	10	10	35	1.689168	4.862576	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39750743	39800297	STRG.113161.1	-	39750743,39800068	39751360,39800297	0.600000
transverse_colon_female_adult_53_years	chr9	39810033	39810034	39810033	-	High_confidence	13	13	19	0.916977	3.836592	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803657	39810061	STRG.70633.1	-	39803657,39809485,39809730	39803859,39809615,39810061	0.789474
transverse_colon_female_adult_53_years	chr9	22113610	22113613	22113612	+	High_confidence	12	18	21	1.013501	3.721612	chr9	22113591	22113733	SINE|MIR|MIRc	+	chr9	22113209	22120713	STRG.69776.7	+	22113209,22120199	22118767,22120713	0.904762
transverse_colon_female_adult_53_years	chrX	74251503	74251552	74251503	-	RAMPAGE_only	6	6	23	1.110024	3.882045	chrX	74251448	74251749	LTR|ERVL|MER21C	+	chrX	74219897	74292351	STRG.127252.3	-	74219897,74261945,74280930,74281701,74292168	74261775,74280494,74281085,74281848,74292351	1.000000
transverse_colon_female_adult_53_years	chr11	65433775	65434286	65434285	+	RAMPAGE_only	15	15	301	14.526842	6.650786	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65423637	65445540	STRG.81845.2	+	65423637,65426060,65439492	65425737,65439402,65445540	0.990033
transverse_colon_female_adult_53_years	chr11	9775695	9775713	9775711	+	High_confidence	2	4	9	0.434357	2.750000	chr11	9775466	9776058	LTR|ERVL|MER21C	+	chr11	9775730	9808379	SBF2-AS1|ENST00000534671.1	+	9775730,9780375,9807847	9775765,9780575,9808379	0.666667
transverse_colon_female_adult_53_years	chr1	155343321	155343324	155343321	-	RAMPAGE_only	19	19	29	1.399596	4.237291	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.862069
transverse_colon_female_adult_53_years	chr10	65570512	65570522	65570521	+	High_confidence	19	34	83	4.005740	5.532639	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570526	65616807	STRG.76177.2	+	65570526,65571424,65572934,65585484,65615635	65570759,65571579,65573056,65585802,65616807	0.759036
transverse_colon_female_adult_53_years	chr12	108635848	108635849	108635848	+	High_confidence	443	447	458	22.103965	7.310863	chr12	108635755	108635962	SINE|MIR|MIRb	-	chr12	108635855	108658484	STRG.90457.1	+	108635855,108658227	108636455,108658484	0.650655
transverse_colon_female_adult_53_years	chr17	50737409	50737431	50737409	+	RAMPAGE_only	1	1	7	0.337834	2.584963	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50744660	50750847	LUC7L3|ENST00000504065.5	+	50744660,50745719,50746541,50749218,50750500	50744813,50746003,50746702,50749344,50750847	0.571429
transverse_colon_female_adult_53_years	chr18	80148048	80148049	80148048	+	High_confidence	77	79	86	4.150526	5.790224	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.732558
transverse_colon_female_adult_53_years	chr3	125774666	125774697	125774696	+	RAMPAGE_only	19	24	49	2.364835	4.368792	chr3	125774578	125774774	DNA|hAT-Charlie|MER58A	+	chr3	125766647	125790120	STRG.29256.4	+	125766647,125772990	125766818,125790120	0.877551
transverse_colon_female_adult_53_years	chr1	75376210	75376224	75376210	-	High_confidence	6	7	15	0.723929	3.807355	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75222417	75376272	STRG.4091.1	-	75222417,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75376272	0.733333
transverse_colon_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	105	105	105	5.067503	4.127346	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.980952
transverse_colon_female_adult_53_years	chr11	57794068	57794070	57794069	+	RAMPAGE_only	10	14	21	1.013501	4.121928	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.952381
transverse_colon_female_adult_53_years	chr9	69123014	69123020	69123014	+	High_confidence	3	5	9	0.434357	2.641604	chr9	69122999	69123107	DNA|hAT-Charlie|MER5A1	+	chr9	69123047	69246746	TJP2|ENST00000647986.1	+	69123047,69151650,69185086,69212547,69216338,69218256,69220886,69225303,69226021,69227764,69227980,69229183,69230081,69234438,69236027,69236948,69237877,69238709,69239936,69246689	69123113,69151771,69185204,69212601,69216463,69218359,69221496,69225407,69226175,69227873,69228114,69229250,69230232,69234547,69236238,69237136,69237973,69238789,69240147,69246746	1.000000
transverse_colon_female_adult_53_years	chr5	131315995	131316048	131315997	+	RAMPAGE_only	4	7	22	1.061763	3.788755	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131278752	131394667	STRG.44655.7	+	131278752,131315975,131359208,131385542,131390992,131391828	131287813,131316144,131359547,131385644,131391108,131394667	0.909091
transverse_colon_female_adult_53_years	chr17	28233986	28234054	28234042	-	High_confidence	13	13	81	3.909217	5.198822	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28230574	28234049	STRG.109146.1	-	28230574,28233917	28233342,28234049	0.802469
transverse_colon_female_adult_53_years	chr6	12350699	12350700	12350699	-	High_confidence	6	6	9	0.434357	3.169925	chr6	12350503	12350887	LTR|ERVL-MaLR|MSTA	-	chr6	12350071	12350639	STRG.47719.1	-	12350071	12350639	0.666667
transverse_colon_female_adult_53_years	chr6	11803079	11803111	11803110	-	RAMPAGE_only	3	3	11	0.530881	3.277613	chr6	11802842	11803160	SINE|Alu|AluJr	+	chr6	11735567	11807046	ADTRP|ENST00000379415.6	-	11735567,11766273,11768248,11778606,11803014,11806883	11735683,11766375,11768383,11778966,11803129,11807046	0.727273
transverse_colon_female_adult_53_years	chr5	39448700	39448723	39448700	-	RAMPAGE_only	47	55	114	5.501860	5.924471	chr5	39448488	39449045	LTR|ERVL|MLT2B3	-	chr5	39393257	39462300	DAB2|ENST00000511792.5	-	39393257,39394229,39462077	39393393,39394421,39462300	0.605263
transverse_colon_female_adult_53_years	chr4	174497596	174497648	174497620	+	RAMPAGE_only	16	17	82	3.957479	5.252318	chr4	174497545	174497875	SINE|Alu|AluSc	-	chr4	174521779	174536055	STRG.39139.2	+	174521779	174536055	0.719512
transverse_colon_female_adult_53_years	chr16	53456884	53456889	53456884	+	RAMPAGE_only	3	3	6	0.289572	2.584963	chr16	53456559	53457052	LINE|L2|L2a	+	chr16	53461768	53480755	STRG.106462.5	+	53461768,53462551,53464225,53465437,53469915,53470745,53479153,53479885,53480566	53461850,53462655,53464363,53467169,53470663,53470922,53479225,53479991,53480755	0.833333
transverse_colon_female_adult_53_years	chr1	113444869	113444895	113444869	+	RAMPAGE_only	3	3	7	0.337834	2.521641	chr1	113443929	113445320	LINE|L1|L1M4c	+	chr1	113416469	113484613	STRG.6180.6	+	113416469,113425561,113480351	113424857,113480331,113484613	1.000000
transverse_colon_female_adult_53_years	chr1	222737198	222737290	222737215	+	High_confidence	40	63	219	10.569363	6.538844	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737215	222750805	FAM177B|ENST00000391880.6	+	222737215,222737877,222746530,222747014,222748960,222749920	222737322,222738021,222746719,222747081,222749562,222750805	0.689498
transverse_colon_female_adult_53_years	chr4	142474407	142474421	142474407	-	High_confidence	3	3	7	0.337834	2.584963	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.571429
transverse_colon_female_adult_53_years	chr6	31186398	31186399	31186398	-	High_confidence	74	82	91	4.391836	5.802904	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31181774	31186528	STRG.48613.12	-	31181774	31186528	0.967033
transverse_colon_female_adult_53_years	chr9	4726609	4726634	4726609	-	RAMPAGE_only	5	6	14	0.675667	3.128085	chr9	4725911	4728263	DNA|TcMar-Tigger|Tigger1	-	chr9	4712044	4741227	STRG.69042.1	-	4712044,4718418,4719134,4722505,4726082,4740936	4713096,4718537,4719307,4722625,4727924,4741227	1.000000
transverse_colon_female_adult_53_years	chr14	61639212	61639235	61639212	+	RAMPAGE_only	2	3	9	0.434357	3.169925	chr14	61638832	61639491	DNA|TcMar-Tigger|Tigger2b_Pri	+	chr14	61570595	61654713	FLJ22447|ENST00000556569.4	+	61570595,61650961,61653622	61570760,61651017,61654713	1.000000
transverse_colon_female_adult_53_years	chrX	73837439	73837451	73837450	-	RAMPAGE_only	9	9	18	0.868715	3.130718	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.888889
transverse_colon_female_adult_53_years	chr13	60442023	60442040	60442023	+	RAMPAGE_only	14	14	34	1.640906	4.741364	chr13	60441716	60442080	LTR|ERVL|MER68B	-	chr13	60434048	60485899	TDRD3|ENST00000377882.7	+	60434048,60439687,60444686,60460379,60467237,60483774,60485798	60434085,60439772,60444748,60460540,60467379,60483846,60485899	0.735294
transverse_colon_female_adult_53_years	chrX	49148830	49148857	49148830	-	RAMPAGE_only	3	3	10	0.482619	2.725481	chrX	49148651	49148812	LTR|ERV1|LTR2C	-	chrX	49143296	49156105	STRG.126021.1	-	49143296,49148383,49155965	49145519,49149165,49156105	0.900000
transverse_colon_female_adult_53_years	chr22	49657443	49657484	49657443	-	High_confidence	8	8	25	1.206548	4.053661	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49414523	49657504	C22orf34|ENST00000414287.5	-	49414523,49416601,49416814,49440875,49657404	49416035,49416735,49416928,49441212,49657504	0.560000
transverse_colon_female_adult_53_years	chr2	121221779	121221799	121221797	-	RAMPAGE_only	3	5	14	0.675667	2.565448	chr2	121221473	121222808	LINE|L1|L1MB8	+	chr2	121216586	121285202	TFCP2L1|NM_014553.2	-	121216586,121225561,121231825,121234090,121235220,121237622,121237801,121239557,121242358,121246817,121248163,121248981,121249570,121281119,121285047	121224387,121225613,121231968,121234194,121235311,121237716,121237850,121239649,121242469,121246970,121248270,121249087,121249647,121281271,121285202	0.928571
transverse_colon_female_adult_53_years	chr11	114117058	114117097	114117096	+	RAMPAGE_only	36	39	96	4.633146	6.055078	chr11	114116797	114117665	LINE|L2|L2c	-	chr11	114076855	114143253	STRG.84044.12	+	114076855,114093670	114093586,114143253	0.500000
transverse_colon_female_adult_53_years	chr1	45005805	45005868	45005805	-	High_confidence	7	7	32	1.544382	4.366729	chr1	45004848	45005768	LINE|L2|L2c	-	chr1	45002539	45005588	HECTD3|ENST00000486132.5	-	45002539,45003668,45003854,45004059,45004247,45004599	45003576,45003740,45003936,45004134,45004377,45005588	1.000000
transverse_colon_female_adult_53_years	chr6	31587007	31587010	31587007	+	High_confidence	3	3	7	0.337834	2.584963	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.714286
transverse_colon_female_adult_53_years	chr19	571751	571792	571754	-	High_confidence	8	13	46	2.220049	4.747191	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.869565
transverse_colon_female_adult_53_years	chr19	40751802	40751834	40751802	-	High_confidence	79	84	186	8.976720	5.339871	chr19	40751529	40751903	LINE|L2|L2b	+	chr19	40740861	40751898	STRG.116559.2	-	40740861,40743904,40744558,40745129,40749480	40742770,40744196,40744683,40745198,40751898	0.989247
transverse_colon_female_adult_53_years	chr9	73160322	73160373	73160372	+	High_confidence	4	4	15	0.723929	3.640224	chr9	73160421	73160511	SINE|MIR|MIR	+	chr9	73160284	73165544	ANXA1|ENST00000489109.1	+	73160284,73160802,73162781,73163475,73165115	73160376,73160893,73162861,73163532,73165544	0.933333
transverse_colon_female_adult_53_years	chr1	31441750	31441767	31441766	+	RAMPAGE_only	4	6	11	0.530881	3.277613	chr1	31441650	31441812	LINE|L2|L2a	+	chr1	31448324	31449836	STRG.1356.2	+	31448324,31449556	31449456,31449836	0.727273
transverse_colon_female_adult_53_years	chr16	8842153	8842179	8842153	+	High_confidence	13	13	20	0.965239	3.584184	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.900000
transverse_colon_female_adult_53_years	chr6	105892925	105893002	105892969	-	High_confidence	5	5	20	0.965239	4.221928	chr6	105892573	105892986	LINE|L2|L2b	+	chr6	105679377	105893041	AL591518.1|ENST00000644129.1	-	105679377,105830056,105885025,105893025	105679491,105830193,105885153,105893041	0.650000
transverse_colon_female_adult_53_years	chrX	16712879	16712933	16712879	-	High_confidence	4	4	31	1.496120	3.828073	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.967742
transverse_colon_female_adult_53_years	chr2	182030773	182030784	182030783	+	High_confidence	5	6	16	0.772191	3.625000	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.937500
transverse_colon_female_adult_53_years	chr1	120031526	120031540	120031539	-	RAMPAGE_only	4	4	10	0.482619	2.947703	chr1	120031341	120031584	SINE|MIR|MIRb	-	chr1	119950407	120051714	NOTCH2|ENST00000579475.7	-	119950407,119953542,119955039,119959391,119963573,119965452,119966375,119967432,119968076,119969510,119986959,119996996,120005328,120029905,120051483	119950837,119953688,119955232,119959502,119963807,119965566,119966489,119967621,119968232,119969744,119987082,119997332,120005588,120029988,120051714	0.800000
transverse_colon_female_adult_53_years	chr22	24301784	24301797	24301784	+	RAMPAGE_only	13	17	38	1.833953	4.864727	chr22	24301766	24302060	SINE|Alu|AluY	+	chr22	24304395	24321688	SPECC1L|ENST00000440893.1	+	24304395,24313312,24321287	24304452,24313466,24321688	0.500000
transverse_colon_female_adult_53_years	chr19	16066963	16066964	16066963	+	High_confidence	12	12	15	0.723929	3.182006	chr19	16066937	16067003	LINE|L2|L2c	-	chr19	16067020	16076141	TPM4|ENST00000589897.1	+	16067020,16067533,16076046	16067306,16067738,16076141	0.866667
transverse_colon_female_adult_53_years	chr14	92726867	92726888	92726867	-	RAMPAGE_only	4	4	12	0.579143	3.277613	chr14	92726862	92727148	LTR|ERVL-MaLR|MLT1L	+	chr14	92703806	92748612	LGMN|ENST00000555699.5	-	92703806,92709671,92711658,92711836,92712804,92713822,92714375,92716135,92717379,92718746,92732648,92748488	92704361,92709872,92711748,92711955,92712871,92713885,92714451,92716221,92717461,92718844,92732815,92748612	0.500000
transverse_colon_female_adult_53_years	chr12	45292831	45292847	45292846	+	High_confidence	3	3	8	0.386095	2.807355	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.875000
transverse_colon_female_adult_53_years	chr18	23992795	23992800	23992795	+	High_confidence	5	6	10	0.482619	2.921928	chr18	23992712	23992806	LINE|RTE-BovB|MamRTE1	+	chr18	23992772	24135610	TTC39C|NM_153211.3	+	23992772,24064139,24066011,24069156,24080584,24082912,24114553,24118124,24123833,24125426,24128885,24130312,24131881,24132484	23993038,24064188,24066140,24069271,24080939,24083081,24114647,24118232,24123943,24125550,24128983,24130417,24131920,24135610	0.500000
transverse_colon_female_adult_53_years	chr11	119046591	119046605	119046604	-	RAMPAGE_only	4	7	17	0.820453	3.750000	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.941176
transverse_colon_female_adult_53_years	chr3	33864009	33864110	33864049	+	High_confidence	4	4	37	1.785692	4.397579	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33863895	33866468	PDCD6IP|ENST00000473593.1	+	33863895,33865242,33866350	33864129,33865430,33866468	0.513514
transverse_colon_female_adult_53_years	chr4	71602757	71602814	71602791	+	High_confidence	4	4	30	1.447858	4.240224	chr4	71602665	71603204	LTR|ERVL|MLT2B3	-	chr4	71602759	71603166	STRG.34582.1	+	71602759	71603166	0.633333
transverse_colon_female_adult_53_years	chr9	123179187	123179221	123179220	-	RAMPAGE_only	17	19	34	1.640906	4.862576	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.911765
transverse_colon_female_adult_53_years	chr12	56642458	56642479	56642458	-	RAMPAGE_only	3	4	9	0.434357	2.641604	chr12	56642329	56642417	SINE|Alu|AluJb	-	chr12	56638174	56645279	ATP5F1B|ENST00000548474.2	-	56638174,56639105,56645170	56638423,56639196,56645279	1.000000
transverse_colon_female_adult_53_years	chr12	111841704	111841722	111841721	-	High_confidence	2	3	8	0.386095	2.521641	chr12	111841557	111841731	SINE|MIR|MIRb	+	chr12	111839776	111841710	MAPKAPK5-AS1|ENST00000590479.5	-	111839776,111840332,111841326,111841683	111840003,111840477,111841470,111841710	0.750000
transverse_colon_female_adult_53_years	chr3	37987981	37987994	37987993	+	High_confidence	228	272	766	36.968641	7.029252	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.826371
transverse_colon_female_adult_53_years	chr1	200789451	200789469	200789451	+	RAMPAGE_only	11	11	18	0.868715	3.614369	chr1	200788951	200790019	LINE|L1|L1MC1	-	chr1	200739778	200860701	CAMSAP2|ENST00000236925.8	+	200739778,200760838,200807375,200815560,200828572,200832199,200832705,200841993,200844781,200847209,200847639,200848031,200852540,200853274,200854816,200856009,200857305,200857753	200739966,200761098,200807537,200815644,200828605,200832341,200832845,200842087,200844869,200847292,200847709,200850234,200852677,200853495,200854889,200856125,200857424,200860701	0.777778
transverse_colon_female_adult_53_years	chr21	22062638	22062676	22062647	-	High_confidence	770	821	2395	115.587330	7.328749	chr21	22062350	22062974	LINE|L2|L2a	+	chr21	22025993	22062693	STRG.121196.3	-	22025993,22042192,22062008	22041435,22043087,22062693	0.938205
transverse_colon_female_adult_53_years	chrX	2917810	2917811	2917810	-	RAMPAGE_only	7	7	7	0.337834	2.521641	chrX	2917473	2917770	SINE|Alu|AluJo	-	chrX	2903969	2929351	ARSD|ENST00000381154.5	-	2903969,2908720,2909816,2910658,2915555,2917803,2920600,2921902,2925615,2929231	2907632,2908842,2909979,2910793,2915692,2918227,2920723,2922024,2925765,2929351	0.857143
transverse_colon_female_adult_53_years	chr16	19449558	19449604	19449599	+	RAMPAGE_only	5	6	27	1.303072	4.323856	chr16	19449636	19450005	LTR|ERVL-MaLR|THE1D	+	chr16	19456449	19499113	TMC5|ENST00000219821.9	+	19456449,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19457016,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	0.814815
transverse_colon_female_adult_53_years	chr3	32077630	32077657	32077656	-	High_confidence	8	8	23	1.110024	3.499228	chr3	32077310	32077987	LTR|ERV1|MER50B	+	chr3	31876432	32077580	OSBPL10|ENST00000479173.1	-	31876432,31879654,32046490,32077395	31876512,31879830,32046603,32077580	0.521739
transverse_colon_female_adult_53_years	chr5	171400153	171400187	171400153	+	RAMPAGE_only	9	9	32	1.544382	4.348394	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171407492	171410884	NPM1|ENST00000524204.1	+	171407492,171410526	171407774,171410884	0.562500
transverse_colon_female_adult_53_years	chr12	79455527	79455537	79455527	-	High_confidence	5	5	12	0.579143	2.855389	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	1.000000
transverse_colon_female_adult_53_years	chr14	32075871	32075899	32075883	+	High_confidence	2	2	8	0.386095	2.500000	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076113	32090780	ARHGAP5|ENST00000555814.1	+	32076113,32076457,32090501	32076217,32076657,32090780	0.875000
transverse_colon_female_adult_53_years	chr3	195689360	195689361	195689360	+	High_confidence	6	6	8	0.386095	2.521641	chr3	195689376	195689522	LINE|L1|L1MC5a	+	chr3	195689377	195708807	MUC20-OT1|ENST00000451216.6	+	195689377,195689545,195708133,195708428,195708746	195689438,195689608,195708268,195708513,195708807	0.625000
transverse_colon_female_adult_53_years	chr8	75324293	75324332	75324331	-	RAMPAGE_only	25	25	72	3.474859	5.413625	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223116	75278889	CASC9|NR_103849.2	-	75223116,75278712	75224358,75278889	0.541667
transverse_colon_female_adult_53_years	chr17	49120296	49120313	49120312	+	High_confidence	4	4	9	0.434357	2.750000	chr17	49120136	49120464	LINE|L2|L2c	-	chr17	49120309	49176840	STRG.110527.3	+	49120309,49141246,49142034,49152799,49156565,49159036,49160554,49164087,49166113,49168680,49169522	49120446,49141447,49142172,49152906,49156603,49159217,49160641,49164275,49166254,49168900,49176840	0.888889
transverse_colon_female_adult_53_years	chr9	39809858	39809870	39809858	-	High_confidence	5	6	12	0.579143	3.188722	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803657	39810061	STRG.70633.1	-	39803657,39809485,39809730	39803859,39809615,39810061	0.750000
transverse_colon_female_adult_53_years	chr22	18079072	18079119	18079072	+	High_confidence	17	17	40	1.930477	4.504121	chr22	18079052	18079186	SINE|Alu|FLAM_C	+	chr22	18078376	18088119	PEX26|ENST00000428061.2	+	18078376,18079873,18083436,18087971	18078606,18080014,18083732,18088119	0.750000
transverse_colon_female_adult_53_years	chr17	72504195	72504196	72504195	-	RAMPAGE_only	14	14	17	0.820453	3.750000	chr17	72504028	72504153	LINE|L2|L2b	-	chr17	72486812	72513849	STRG.111414.1	-	72486812	72513849	0.941176
transverse_colon_female_adult_53_years	chr4	84299222	84299244	84299223	-	High_confidence	4	7	14	0.675667	3.324863	chr4	84298780	84304810	LINE|L1|L1PA2	+	chr4	84286676	84299238	STRG.35365.1	-	84286676,84293219,84299123	84286827,84293409,84299238	0.500000
transverse_colon_female_adult_53_years	chr3	125810917	125810918	125810917	+	RAMPAGE_only	31	33	38	1.833953	4.790270	chr3	125810780	125811138	LTR|ERVL-MaLR|THE1B	+	chr3	125805654	125825323	STRG.29256.7	+	125805654	125825323	0.631579
transverse_colon_female_adult_53_years	chr4	47187727	47187755	47187742	-	High_confidence	6	6	29	1.399596	4.487123	chr4	47187646	47188171	LINE|L2|L2a	+	chr4	47185243	47187734	STRG.33931.1	-	47185243	47187734	0.862069
transverse_colon_female_adult_53_years	chrX	155073380	155073402	155073380	+	RAMPAGE_only	2	2	6	0.289572	2.584963	chrX	155073000	155073435	DNA|TcMar-Tigger|Tigger20a	-	chrX	155071531	155123036	BRCC3|ENST00000453705.1	+	155071531,155073373,155077169,155078615,155089262,155090783,155116056,155116710,155119998,155121222	155071654,155073431,155077289,155078703,155089351,155090839,155116188,155116754,155120168,155123036	1.000000
transverse_colon_female_adult_53_years	chr7	104926544	104926545	104926544	-	High_confidence	37	39	42	2.027001	5.095238	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104911915	104926630	LHFPL3-AS2|ENST00000453666.2	-	104911915,104915705,104917559,104920384,104926452	104912076,104915827,104917980,104920425,104926630	0.500000
transverse_colon_female_adult_53_years	chr2	196176330	196176332	196176331	-	High_confidence	33	64	80	3.860955	5.480875	chr2	196176299	196176378	LINE|RTE-BovB|MamRTE1	-	chr2	196156571	196176327	STK17B|ENST00000420683.1	-	196156571,196163261,196174248,196176225	196156651,196163427,196174407,196176327	0.650000
transverse_colon_female_adult_53_years	chr19	15681562	15681592	15681576	+	High_confidence	2	2	8	0.386095	2.807355	chr19	15681355	15681801	LTR|ERVL|LTR40c	-	chr19	15681500	15697143	CYP4F12|ENST00000546608.1	+	15681500,15683492,15685067,15695935,15696160,15696907	15682514,15684882,15685197,15696069,15696512,15697143	0.750000
transverse_colon_female_adult_53_years	chr7	117489179	117489211	117489179	+	RAMPAGE_only	6	6	20	0.965239	3.884184	chr7	117489145	117489456	DNA|TcMar-Tc2|Kanga11a	+	chr7	117480094	117667108	CFTR|ENST00000649781.1	+	117480094,117504252,117509033,117530898,117534275,117535247,117536547,117540099,117542015,117559463,117587738,117590352,117591933,117594929,117602825,117603531,117606673,117610518,117611580,117614612,117627521,117642437,117652841,117664687,117665458,117666907	117480147,117504363,117509142,117531114,117534365,117535411,117536673,117540346,117542108,117559655,117587833,117590439,117592657,117595058,117602863,117603782,117606753,117610669,117611808,117614713,117627770,117642593,117652931,117664860,117665564,117667108	0.900000
transverse_colon_female_adult_53_years	chr10	68307085	68307128	68307107	-	High_confidence	58	61	208	10.038482	5.232033	chr10	68307029	68307329	SINE|Alu|AluSx1	-	chr10	68287026	68306879	PBLD|ENST00000277795.8	-	68287026,68292009,68292128,68296885,68306760	68289019,68292039,68292238,68296985,68306879	0.812500
transverse_colon_female_adult_53_years	chr1	43537615	43537646	43537640	+	High_confidence	5	5	14	0.675667	3.546594	chr1	43537442	43537857	LINE|L2|L2b	-	chr1	43538197	43580078	PTPRF|ENST00000372405.1	+	43538197,43545030,43553491,43553799,43569589,43578809	43538277,43545166,43553637,43553941,43569778,43580078	0.571429
transverse_colon_female_adult_53_years	chr4	184353936	184353960	184353955	-	High_confidence	5	5	16	0.772191	3.750000	chr4	184353593	184354081	LTR|ERVL-MaLR|MLT1G	+	chr4	184340755	184353977	LINC02363|ENST00000317596.3	-	184340755,184350088,184353312	184342053,184350278,184353977	1.000000
transverse_colon_female_adult_53_years	chrX	74245352	74245392	74245352	-	RAMPAGE_only	4	4	12	0.579143	2.617492	chrX	74245328	74245575	LINE|L1|L1MB4	+	chrX	74219897	74292351	STRG.127252.3	-	74219897,74261945,74280930,74281701,74292168	74261775,74280494,74281085,74281848,74292351	1.000000
transverse_colon_female_adult_53_years	chr20	35605288	35605326	35605298	-	High_confidence	17	18	51	2.461359	5.277569	chr20	35605067	35605498	LINE|L2|L2c	+	chr20	35600698	35605326	FER1L4|ENST00000325076.9	-	35600698,35601531,35601805,35603009,35603258,35603796,35604303,35604529,35605101	35600924,35601718,35602751,35603141,35603319,35603967,35604345,35604621,35605326	0.803922
transverse_colon_female_adult_53_years	chr17	4134476	4134518	4134476	-	RAMPAGE_only	5	6	23	1.110024	4.055958	chr17	4134402	4134548	LINE|L2|L2c	-	chr17	4004444	4142959	ZZEF1|NM_015113.3	-	4004444,4008882,4009603,4013448,4014089,4014346,4016322,4017370,4017835,4019668,4021128,4022708,4024918,4032125,4032827,4034014,4042428,4044223,4049707,4050780,4051970,4054056,4056215,4057993,4059170,4062752,4064360,4066446,4067162,4070683,4072607,4074149,4075096,4075262,4076636,4076867,4077882,4081375,4082436,4085669,4086485,4087433,4088677,4090718,4095830,4096608,4102316,4104632,4105692,4109652,4112608,4114298,4116971,4123906,4142541	4006970,4008954,4009757,4013614,4014188,4014515,4016466,4017730,4017971,4019769,4021320,4022828,4025118,4032258,4033002,4034292,4042568,4044374,4049859,4051043,4052136,4054195,4056345,4058155,4059290,4062917,4064829,4066540,4067242,4070924,4072756,4074351,4075178,4075429,4076759,4076989,4078042,4081490,4082504,4085803,4086655,4087534,4088893,4090830,4095979,4096700,4102415,4104811,4105809,4109863,4112808,4114470,4117166,4124051,4142959	0.782609
transverse_colon_female_adult_53_years	chrX	119552599	119552614	119552599	-	RAMPAGE_only	4	5	12	0.579143	3.251629	chrX	119552336	119552767	LTR|ERVL|MER21A	-	chrX	119539569	119542767	CXorf56|ENST00000469448.1	-	119539569,119541327,119542504	119539789,119541420,119542767	1.000000
transverse_colon_female_adult_53_years	chr6	150201512	150201513	150201512	+	RAMPAGE_only	9	9	9	0.434357	2.725481	chr6	150201380	150201892	LINE|L2|L2a	-	chr6	150143075	150250357	PPP1R14C|ENST00000361131.4	+	150143075,150214743,150216823,150248745	150143498,150214827,150216856,150250357	0.666667
transverse_colon_female_adult_53_years	chr11	100715407	100715410	100715407	+	RAMPAGE_only	11	11	21	1.013501	4.142664	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100738442	100913524	ARHGAP42|ENST00000534060.5	+	100738442,100770342,100795104,100816714,100859553,100913451	100738498,100770438,100795166,100816856,100859625,100913524	0.523810
transverse_colon_female_adult_53_years	chr14	101731413	101731423	101731413	+	High_confidence	16	16	35	1.689168	4.594672	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.800000
transverse_colon_female_adult_53_years	chr2	121203991	121204026	121204025	-	High_confidence	27	27	111	5.357075	5.464143	chr2	121203877	121204117	LTR|ERVL|MER21C	+	chr2	121203501	121204020	STRG.17947.1	-	121203501	121204020	0.927928
transverse_colon_female_adult_53_years	chr5	109383445	109383455	109383448	-	High_confidence	5	9	20	0.965239	3.784184	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	1.000000
transverse_colon_female_adult_53_years	chr1	204116564	204116581	204116564	+	High_confidence	2	2	6	0.289572	2.584963	chr1	204116612	204116693	LINE|RTE-BovB|MamRTE1	+	chr1	204116506	204122917	SOX13|ENST00000480326.1	+	204116506,204117121,204117592,204121870,204122236,204122853	204116679,204117190,204117707,204121985,204122399,204122917	1.000000
transverse_colon_female_adult_53_years	chr2	3536845	3536868	3536867	-	High_confidence	4	4	18	0.868715	3.616875	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.500000
transverse_colon_female_adult_53_years	chr5	140655883	140655989	140655988	+	RAMPAGE_only	8	10	81	3.909217	5.192496	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.950617
transverse_colon_female_adult_53_years	chr2	203015503	203015535	203015503	+	High_confidence	9	9	31	1.496120	4.413716	chr2	203015479	203015763	SINE|Alu|AluSx1	-	chr2	203015511	203057706	STRG.21798.12	+	203015511,203016155,203041764,203049813,203057325	203015864,203016435,203041856,203056508,203057706	0.935484
transverse_colon_female_adult_53_years	chr15	40650121	40650152	40650125	+	RAMPAGE_only	6	8	23	1.110024	3.823068	chr15	40650091	40650181	LINE|L2|L2c	+	chr15	40623131	40664339	KNL1|ENST00000526913.5	+	40623131,40628069,40628610,40629272,40640911,40644996,40645655,40646986,40650300,40650543,40651470,40652004,40654908,40657041,40657354,40659338,40662073,40663334	40625640,40628208,40628678,40629371,40641027,40645087,40645772,40647074,40650378,40650583,40651572,40652105,40654977,40657151,40657473,40659461,40662683,40664339	0.869565
transverse_colon_female_adult_53_years	chr10	77498958	77498961	77498958	-	High_confidence	3	3	9	0.434357	2.947703	chr10	77498859	77499086	SINE|MIR|MIR	+	chr10	77183472	77498970	KCNMA1|ENST00000640311.1	-	77183472,77184822,77251194,77403861,77493797,77498583	77183532,77184916,77251256,77404023,77493929,77498970	0.777778
transverse_colon_female_adult_53_years	chr1	100268183	100268281	100268280	+	RAMPAGE_only	8	8	46	2.220049	4.213731	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266248	100291771	RTCA|ENST00000260563.4	+	100266248,100266523,100267499,100268151,100270556,100273393,100274823,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100267538,100268295,100270680,100273452,100274965,100275723,100277316,100285322,100287203,100291771	0.913043
transverse_colon_female_adult_53_years	chr13	49495740	49495741	49495740	+	High_confidence	6	6	9	0.434357	3.000000	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495664	49518060	PHF11|ENST00000481509.5	+	49495664,49513058,49518017	49496095,49513166,49518060	0.777778
transverse_colon_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	1713	1774	5479	264.427133	7.433866	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.590436
transverse_colon_female_adult_53_years	chr11	64242608	64242620	64242619	+	High_confidence	51	53	130	6.274051	5.838882	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.961538
transverse_colon_female_adult_53_years	chr8	80485592	80485650	80485592	+	High_confidence	21	21	50	2.413097	5.053286	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.740000
transverse_colon_female_adult_53_years	chr4	110134688	110134744	110134743	+	High_confidence	60	60	199	9.604125	5.669843	chr4	110134680	110134965	SINE|Alu|AluJr	+	chr4	110134611	110138695	STRG.36826.1	+	110134611	110138695	0.944724
transverse_colon_female_adult_53_years	chr1	90219424	90219446	90219445	+	High_confidence	5	5	11	0.530881	3.121928	chr1	90218768	90219842	LINE|L1|L1PA3	-	chr1	90219671	90285873	STRG.5191.1	+	90219671,90264681,90281560,90283805	90219858,90264734,90281690,90285873	0.636364
transverse_colon_female_adult_53_years	chr3	124938154	124938155	124938154	-	RAMPAGE_only	9	9	9	0.434357	3.169925	chr3	124938000	124938162	LTR|ERVL|LTR79	+	chr3	124905441	124934751	MUC13|ENST00000616727.4	-	124905441,124908146,124910414,124912103,124913110,124913561,124916316,124920233,124922196,124923526,124927531,124934660	124906742,124908348,124910499,124912141,124913240,124913681,124916480,124920289,124922303,124923649,124927993,124934751	1.000000
transverse_colon_female_adult_53_years	chr1	230601541	230601579	230601541	+	High_confidence	143	146	261	12.596365	5.847968	chr1	230601215	230601646	LTR|ERV1|LTR7	+	chr1	230601548	230609276	STRG.11538.1	+	230601548,230608650	230601794,230609276	0.559387
transverse_colon_female_adult_53_years	chr5	131224107	131224157	131224107	-	High_confidence	34	39	121	5.839694	6.159307	chr5	131223718	131224171	LINE|L2|L2-3_Crp	+	chr5	131209413	131224589	STRG.44659.1	-	131209413,131223948	131210153,131224589	0.644628
transverse_colon_female_adult_53_years	chr4	6927314	6927319	6927318	+	RAMPAGE_only	7	7	17	0.820453	3.750000	chr4	6927305	6927415	SINE|MIR|MIR	+	chr4	6909844	7033111	TBC1D14|ENST00000409757.8	+	6909844,6923372,6967303,6994183,6996324,6999084,7001144,7004843,7006631,7009876,7010652,7014447,7025003,7030326	6909951,6924111,6967424,6994302,6996407,6999202,7001251,7004924,7006726,7009948,7010781,7014557,7025262,7033111	0.764706
transverse_colon_female_adult_53_years	chr19	35115816	35115923	35115844	+	High_confidence	470	492	3234	156.079092	8.088648	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.805195
transverse_colon_female_adult_53_years	chr22	46578331	46578332	46578331	+	RAMPAGE_only	47	51	68	3.281811	5.291221	chr22	46578347	46578471	SINE|MIR|MIRc	+	chr22	46576011	46637936	GRAMD4|ENST00000447351.5	+	46576011,46626750,46637839	46576078,46626961,46637936	0.750000
transverse_colon_female_adult_53_years	chr11	65431234	65431347	65431244	+	RAMPAGE_only	7	8	50	2.413097	5.054381	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65423637	65445540	STRG.81845.2	+	65423637,65426060,65439492	65425737,65439402,65445540	0.940000
transverse_colon_female_adult_53_years	chr17	41797757	41797794	41797757	-	RAMPAGE_only	16	20	81	3.909217	5.501284	chr17	41797695	41797862	SINE|Alu|AluSz	-	chr17	41767400	41786931	JUP|ENST00000437187.5	-	41767400,41768968,41769417,41771646,41786797	41767580,41769207,41769677,41771862,41786931	0.530864
transverse_colon_female_adult_53_years	chr12	126772317	126772352	126772336	-	High_confidence	14	14	28	1.351334	3.825252	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126748055	126772356	LINC00944|ENST00000542248.5	-	126748055,126760931,126763414,126772078	126748127,126761045,126763498,126772356	0.642857
transverse_colon_female_adult_53_years	chr17	41550091	41550098	41550091	+	RAMPAGE_only	6	6	10	0.482619	2.725481	chr17	41550014	41550235	SINE|MIR|MIRb	+	chr17	41555952	41557003	STRG.109892.1	+	41555952	41557003	0.600000
transverse_colon_female_adult_53_years	chr1	33021446	33021456	33021446	-	RAMPAGE_only	6	7	16	0.772191	3.506891	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.937500
transverse_colon_female_adult_53_years	chr3	136618103	136618104	136618103	-	RAMPAGE_only	4	4	7	0.337834	2.584963	chr3	136618032	136618497	LTR|ERV1|LTR10F	+	chr3	136368602	136629281	STRG.29825.3	-	136368602,136377659,136398748,136417884,136421092,136422409,136422767,136422951,136433555,136443286,136452032,136464880,136472412,136473538,136477288,136500222,136502627,136542118,136568764,136604308,136623145,136625204	136369282,136377752,136398829,136417972,136421163,136422613,136422857,136423044,136433659,136443404,136452147,136464988,136472492,136473637,136477412,136500296,136521417,136542195,136568861,136604473,136623248,136629281	0.857143
transverse_colon_female_adult_53_years	chr1	26848214	26848253	26848214	+	RAMPAGE_only	10	10	31	1.496120	4.348394	chr1	26848030	26848328	SINE|Alu|AluSx	+	chr1	26832003	26853963	ZDHHC18|ENST00000374141.6	+	26832003,26832446,26848607,26850300,26850557,26851128,26852752,26853725	26832053,26832607,26848757,26850438,26850606,26851231,26852865,26853963	0.612903
transverse_colon_female_adult_53_years	chr3	187021850	187021852	187021851	+	High_confidence	37	64	74	3.571383	5.095504	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.783784
transverse_colon_female_adult_53_years	chr1	40381323	40381353	40381330	+	RAMPAGE_only	4	4	17	0.820453	3.750000	chr1	40381190	40381531	LINE|L2|L2c	-	chr1	40373725	40415369	STRG.1948.2	+	40373725,40387855,40406735,40408652,40409756,40413015,40414158,40415271	40387813,40396006,40406869,40408738,40409835,40413102,40414240,40415369	0.941176
transverse_colon_female_adult_53_years	chr7	29376393	29376422	29376393	+	RAMPAGE_only	24	28	67	3.233550	5.339837	chr7	29376417	29376587	DNA|hAT-Charlie|MER5A	+	chr7	29396647	29401281	CHN2|ENST00000491856.1	+	29396647,29400542	29398486,29401281	0.791045
transverse_colon_female_adult_53_years	chr16	23354985	23355015	23354985	+	RAMPAGE_only	2	2	10	0.482619	3.321928	chr16	23354922	23355096	LTR|ERVL|LTR16A1	-	chr16	23348591	23380803	SCNN1B|ENST00000564275.5	+	23348591,23352800,23355298,23371298,23371775,23375737,23377164,23377328,23378705,23380093,23380420	23348910,23353074,23355489,23371462,23371883,23375855,23377240,23377386,23378767,23380169,23380803	0.500000
transverse_colon_female_adult_53_years	chr1	67138980	67139011	67139010	+	High_confidence	17	17	101	4.874455	5.834114	chr1	67139035	67139205	LTR|ERVL-MaLR|MLT1K	+	chr1	67138995	67261598	STRG.3952.1	+	67138995,67160039,67168091,67169341,67182835,67200736,67206909,67219573,67236712,67240178,67255836,67258477	67139161,67160154,67168190,67169638,67182959,67200897,67207055,67219730,67236802,67240281,67255927,67261598	0.732673
transverse_colon_female_adult_53_years	chr3	37988128	37988160	37988159	+	High_confidence	3	3	6	0.289572	2.584963	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.833333
transverse_colon_female_adult_53_years	chr3	112498018	112498023	112498022	-	RAMPAGE_only	6	6	10	0.482619	2.641604	chr3	112498003	112498161	SINE|tRNA-RTE|MamSINE1	+	chr3	112466107	112499358	BTLA|ENST00000383680.4	-	112466107,112469757,112479454,112499270	112466383,112469804,112479769,112499358	0.600000
transverse_colon_female_adult_53_years	chr6	31186510	31186568	31186532	-	High_confidence	29	38	124	5.984480	6.235038	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31181774	31186528	STRG.48613.12	-	31181774	31186528	0.991935
transverse_colon_female_adult_53_years	chr9	20658607	20658692	20658607	+	High_confidence	7	8	40	1.930477	4.421928	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658335	20770112	STRG.69687.6	+	20658335,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.675000
transverse_colon_female_adult_53_years	chr19	5847518	5847519	5847518	+	High_confidence	51	51	51	2.461359	5.054587	chr19	5847388	5847625	LTR|ERV1|LTR7B	+	chr19	5847466	5858239	AC024592.2|ENST00000589276.1	+	5847466,5852503,5854570,5857615	5847768,5852673,5854662,5858239	0.509804
transverse_colon_female_adult_53_years	chr14	81427441	81427467	81427441	-	High_confidence	5	5	22	1.061763	3.975418	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.954545
transverse_colon_female_adult_53_years	chr1	23417917	23417997	23417917	-	RAMPAGE_only	22	23	136	6.563623	5.764950	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23383432	23424618	TCEA3|ENST00000476978.2	-	23383432,23384345,23387272,23393878,23397544,23397791,23408663,23417248,23417903,23419076,23424564	23384068,23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418009,23419139,23424618	0.992647
transverse_colon_female_adult_53_years	chr8	29148576	29148616	29148576	-	RAMPAGE_only	2	3	18	0.868715	3.852169	chr8	29148400	29148564	SINE|Alu|FAM	-	chr8	29067278	29263073	KIF13B|ENST00000524189.5	-	29067278,29071619,29075280,29092744,29099132,29108138,29109433,29109917,29113462,29116830,29118867,29122590,29123365,29124023,29126481,29127121,29130532,29132307,29134039,29140062,29140467,29142156,29146377,29147391,29148576,29150296,29155725,29160732,29165661,29167372,29176067,29177465,29180103,29181918,29186291,29188514,29190996,29196186,29245345,29262979	29070766,29072316,29075343,29092878,29099241,29108192,29109511,29110070,29113555,29117007,29118992,29122646,29123492,29124123,29126511,29127268,29130665,29132465,29134210,29140191,29140617,29142303,29146540,29147602,29148767,29150383,29155856,29160867,29165772,29167585,29176179,29177578,29180238,29182006,29186472,29188607,29191057,29196199,29245439,29263073	0.833333
transverse_colon_female_adult_53_years	chr12	127944402	127944408	127944402	+	RAMPAGE_only	5	5	11	0.530881	2.921928	chr12	127943789	127944506	LTR|ERV1|LTR8	-	chr12	127915471	127951552	LINC00507|ENST00000542089.1	+	127915471,127934289,127944717,127949973	127915682,127934349,127944799,127951552	0.909091
transverse_colon_female_adult_53_years	chr8	119875414	119875416	119875414	+	RAMPAGE_only	5	9	11	0.530881	3.277613	chr8	119875349	119875433	LTR|ERV1|HERVH-int	-	chr8	119873716	120050913	DEPTOR|ENST00000286234.5	+	119873716,119928399,119929814,119965231,120001524,120002976,120006804,120009028,120049575	119873968,119928578,119929938,119965410,120001710,120003111,120006875,120009133,120050913	0.727273
transverse_colon_female_adult_53_years	chr6	166957403	166957430	166957417	-	High_confidence	2	2	10	0.482619	2.947703	chr6	166957416	166957859	LINE|L2|L2a	+	chr6	166929539	166957184	RNASET2|ENST00000476238.6	-	166929539,166931043,166934090,166938894,166943018,166946681,166948569,166952487,166956096,166957125	166929791,166931118,166934136,166939008,166943089,166946739,166948625,166952548,166956191,166957184	0.700000
transverse_colon_female_adult_53_years	chr8	118054776	118054801	118054776	-	RAMPAGE_only	3	3	14	0.675667	3.180833	chr8	118054490	118054728	SINE|MIR|MIRb	-	chr8	117858646	118111853	STRG.67672.6	-	117858646,118041709	117858768,118111853	0.928571
transverse_colon_female_adult_53_years	chr6	28354039	28354042	28354041	-	High_confidence	5	9	14	0.675667	3.546594	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28352028	28354215	STRG.48401.6	-	28352028	28354215	0.571429
transverse_colon_female_adult_53_years	chr3	28347653	28347654	28347653	-	RAMPAGE_only	10	10	12	0.579143	3.277613	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28322352	28348790	AZI2|ENST00000295748.7	-	28322352,28326831,28332368,28336736,28337936,28338492,28340401,28341511,28348600	28324454,28326950,28332427,28336885,28338036,28338615,28340601,28341596,28348790	0.500000
transverse_colon_female_adult_53_years	chr22	26711441	26711453	26711452	+	RAMPAGE_only	3	3	12	0.579143	3.251629	chr22	26711101	26711565	LTR|ERVL|LTR16C	-	chr22	26717251	26742838	MIATNB|ENST00000446336.1	+	26717251,26726643,26742738	26717459,26726794,26742838	0.666667
transverse_colon_female_adult_53_years	chr2	109546077	109546091	109546077	-	RAMPAGE_only	4	4	9	0.434357	2.750000	chr2	109545815	109546035	LINE|L2|L2a	-	chr2	109542796	109613657	SEPT10|NM_001321513.1	-	109542796,109553086,109564365,109565762,109567814,109574580,109585125,109585720,109593050,109613111	109546237,109553219,109564534,109565859,109567976,109574767,109585321,109585838,109593119,109613657	0.888889
transverse_colon_female_adult_53_years	chr2	182928788	182928790	182928788	-	RAMPAGE_only	7	10	12	0.579143	2.845351	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.666667
transverse_colon_female_adult_53_years	chr5	117454948	117454966	117454949	+	High_confidence	64	100	200	9.652387	6.720981	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.550000
transverse_colon_female_adult_53_years	chr2	55618869	55618873	55618869	-	High_confidence	4	4	8	0.386095	2.521641	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.875000
transverse_colon_female_adult_53_years	chr2	169035157	169035196	169035157	-	High_confidence	14	14	49	2.364835	5.247363	chr2	169034898	169035259	LTR|ERVL-MaLR|MLT1J1	-	chr2	169032310	169035174	STRG.19818.1	-	169032310	169035174	0.836735
transverse_colon_female_adult_53_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	10	10	12	0.579143	3.277613	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.666667
transverse_colon_female_adult_53_years	chr12	123390683	123390745	123390725	+	High_confidence	5	5	26	1.254810	3.973661	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.846154
transverse_colon_female_adult_53_years	chr15	70057810	70057846	70057810	-	High_confidence	3	3	9	0.434357	2.750000	chr15	70057809	70057964	SINE|MIR|MIR3	-	chr15	70048976	70058790	TLE3|ENST00000557815.1	-	70048976,70052373,70057473	70051467,70056374,70058790	0.888889
transverse_colon_female_adult_53_years	chr9	69477104	69477105	69477104	+	RAMPAGE_only	6	6	6	0.289572	2.584963	chr9	69477107	69483129	LINE|L1|L1PA2	+	chr9	69472465	69494513	AL353693.1|ENST00000429567.2	+	69472465,69474262,69494286	69472590,69474352,69494513	1.000000
transverse_colon_female_adult_53_years	chr9	131676834	131676841	131676834	-	RAMPAGE_only	21	28	82	3.957479	5.803657	chr9	131676817	131677003	DNA|hAT-Charlie|MER5A	+	chr9	131638697	131687928	STRG.74094.7	-	131638697,131643238,131650128,131676556	131638791,131643417,131650949,131687928	0.634146
transverse_colon_female_adult_53_years	chr5	122475891	122475916	122475915	+	High_confidence	4	4	11	0.530881	2.732159	chr5	122475794	122475946	LTR|ERV1|HERVH-int	-	chr5	122475816	122476387	STRG.44037.1	+	122475816	122476387	0.545455
transverse_colon_female_adult_53_years	chr14	53217884	53217897	53217890	+	High_confidence	3	3	11	0.530881	2.921928	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217890	53369501	AL365295.1|ENST00000435322.1	+	53217890,53304807,53318030,53369454	53218055,53305053,53318138,53369501	0.545455
transverse_colon_female_adult_53_years	chr21	36005313	36005320	36005319	+	High_confidence	19	20	40	1.930477	4.859641	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.825000
transverse_colon_female_adult_53_years	chr16	29736923	29736924	29736923	-	High_confidence	166	192	208	10.038482	5.894235	chr16	29736740	29737042	LTR|ERVL-MaLR|THE1C	-	chr16	29731050	29736944	STRG.106211.1	-	29731050,29736632,29736823	29736296,29736707,29736944	0.947115
transverse_colon_female_adult_53_years	chr14	57274828	57274861	57274860	+	RAMPAGE_only	3	5	13	0.627405	3.392747	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.769231
transverse_colon_female_adult_53_years	chr1	160998174	160998175	160998174	-	RAMPAGE_only	13	13	19	0.916977	3.308271	chr1	160998004	160998172	SINE|Alu|AluSp	-	chr1	160995210	161021343	F11R|NM_016946.4	-	160995210,160999042,160999395,160999639,160999875,161000145,161000630,161001019,161001284,161021009	160998906,160999091,160999408,160999747,160999978,161000348,161000777,161001127,161001353,161021343	0.947368
transverse_colon_female_adult_53_years	chr19	5680234	5680261	5680248	-	High_confidence	10	11	38	1.833953	4.458793	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.921053
transverse_colon_female_adult_53_years	chr16	81664297	81664344	81664343	+	RAMPAGE_only	5	6	16	0.772191	3.202820	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81648508	81710538	STRG.107564.4	+	81648508,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81651427,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	1.000000
transverse_colon_female_adult_53_years	chr20	38985938	38985975	38985938	+	RAMPAGE_only	4	4	14	0.675667	3.664498	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.928571
transverse_colon_female_adult_53_years	chr19	4338656	4338676	4338675	-	High_confidence	3	3	8	0.386095	2.521641	chr19	4338558	4338631	SINE|MIR|MIR1_Amn	-	chr19	4325458	4338809	STAP2|ENST00000601482.1	-	4325458,4326941,4327123,4327315,4329960,4332021,4333689,4333972,4338651	4325545,4327007,4327226,4327385,4330061,4332074,4333816,4334044,4338809	0.875000
transverse_colon_female_adult_53_years	chr7	15668184	15668220	15668185	+	High_confidence	9	14	47	2.268311	4.942783	chr7	15668111	15668470	DNA|TcMar-Tigger|Tigger2a	+	chr7	15667946	15681980	AC005550.2|ENST00000451240.1	+	15667946,15676019,15677462,15678913	15668296,15676160,15677647,15681980	0.872340
transverse_colon_female_adult_53_years	chr16	2769809	2769878	2769820	+	High_confidence	8	9	43	2.075263	5.064869	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2770934	SRRM2|ENST00000574866.1	+	2769894,2770351,2770603,2770857	2770227,2770465,2770717,2770934	0.930233
transverse_colon_female_adult_53_years	chr11	114534549	114534566	114534565	-	RAMPAGE_only	3	3	8	0.386095	2.807355	chr11	114533301	114539446	LINE|L1|L1PA4	+	chr11	114521715	114551201	STRG.84086.12	-	114521715,114522878,114527839,114528795,114531331	114522503,114523091,114527901,114530908,114551201	0.875000
transverse_colon_female_adult_53_years	chr9	112755155	112755156	112755155	+	RAMPAGE_only	5	5	8	0.386095	2.807355	chr9	112755032	112755595	LINE|L2|L2a	-	chr9	112750853	112874987	SNX30|NM_001012994.1	+	112750853,112804775,112817704,112830724,112836213,112838497,112850858,112864246,112868783	112751157,112804967,112817815,112830883,112836409,112838697,112850945,112864399,112874987	0.875000
transverse_colon_female_adult_53_years	chr7	6990709	6990730	6990729	+	High_confidence	77	88	292	14.092485	6.412936	chr7	6989229	6992060	LTR|ERV1|HERVS71-int	-	chr7	6990731	6992836	STRG.55292.1	+	6990731	6992836	0.674658
transverse_colon_female_adult_53_years	chr6	106970672	106971830	106970672	-	RAMPAGE_only	51	64	1808	87.257575	8.028685	chr6	106970529	106970829	SINE|Alu|AluSx1	+	chr6	106969830	106974039	CD24|NM_001291739.1	-	106969830,106973669	106971834,106974039	1.000000
transverse_colon_female_adult_53_years	chr4	142565979	142566076	142566075	+	High_confidence	15	28	64	3.088764	5.107901	chr4	142566070	142566604	LINE|L2|L2c	-	chr4	142566018	142660950	AC139720.1|ENST00000509497.1	+	142566018,142583451,142660782	142566190,142583623,142660950	0.640625
transverse_colon_female_adult_53_years	chr12	13376226	13376260	13376226	-	High_confidence	4	4	14	0.675667	3.546594	chr12	13376083	13376246	DNA|hAT-Charlie|Charlie15a	-	chr12	13373013	13376430	LINC01559|ENST00000527705.2	-	13373013,13376223	13373438,13376430	0.571429
transverse_colon_female_adult_53_years	chr19	14491699	14491739	14491738	-	RAMPAGE_only	3	4	8	0.386095	3.000000	chr19	14491587	14491827	LINE|L2|L2	+	chr19	14477761	14496132	GIPC1|ENST00000393033.8	-	14477761,14478683,14479411,14480304,14480592,14482688,14491655,14492856,14496036	14478567,14478765,14479524,14480485,14480778,14483006,14491743,14492912,14496132	0.625000
transverse_colon_female_adult_53_years	chr8	29140057	29140152	29140071	-	RAMPAGE_only	4	4	27	1.303072	4.483856	chr8	29139958	29140038	DNA|TcMar-Mariner|MADE1	-	chr8	29067278	29263073	KIF13B|ENST00000524189.5	-	29067278,29071619,29075280,29092744,29099132,29108138,29109433,29109917,29113462,29116830,29118867,29122590,29123365,29124023,29126481,29127121,29130532,29132307,29134039,29140062,29140467,29142156,29146377,29147391,29148576,29150296,29155725,29160732,29165661,29167372,29176067,29177465,29180103,29181918,29186291,29188514,29190996,29196186,29245345,29262979	29070766,29072316,29075343,29092878,29099241,29108192,29109511,29110070,29113555,29117007,29118992,29122646,29123492,29124123,29126511,29127268,29130665,29132465,29134210,29140191,29140617,29142303,29146540,29147602,29148767,29150383,29155856,29160867,29165772,29167585,29176179,29177578,29180238,29182006,29186472,29188607,29191057,29196199,29245439,29263073	0.592593
transverse_colon_female_adult_53_years	chr10	113048000	113048029	113048000	+	RAMPAGE_only	2	2	10	0.482619	3.321928	chr10	113047925	113048037	DNA|hAT-Charlie|MER103C	+	chr10	112950756	113116659	STRG.78439.9	+	112950756,112951206,112951482,112964555,113040024,113072303,113075204	112950945,112951273,112951607,112964624,113070004,113075109,113116659	1.000000
transverse_colon_female_adult_53_years	chr16	15006394	15006427	15006394	+	RAMPAGE_only	5	6	14	0.675667	3.392747	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	14997747	15038323	PDXDC1|ENST00000450288.3	+	14997747,14998339,15006393,15008778,15009680,15016128,15017119,15017320,15018839,15022703,15026642,15028877,15029950,15031734,15032860,15033277,15034285,15034456,15035448,15036015	14997826,14998405,15006583,15008847,15009759,15016213,15017168,15017422,15018965,15022754,15026706,15028966,15030056,15031906,15032979,15033399,15034378,15034553,15035553,15038323	0.785714
transverse_colon_female_adult_53_years	chr12	93151202	93151207	93151202	-	High_confidence	3	3	8	0.386095	2.807355	chr12	93151088	93151281	LINE|L2|L2a	+	chr12	93150696	93151664	STRG.89686.1	-	93150696	93151664	0.500000
transverse_colon_female_adult_53_years	chr9	37187475	37187503	37187476	+	RAMPAGE_only	6	8	19	0.916977	4.247928	chr9	37187210	37187548	DNA|hAT-Charlie|MER1B	-	chr9	37144931	37356980	ZCCHC7|ENST00000488607.5	+	37144931,37147361,37302187,37304187,37305543,37327798,37349356,37354709,37356834	37144997,37147445,37302231,37304313,37305714,37327834,37349452,37354824,37356980	0.578947
transverse_colon_female_adult_53_years	chr12	126030632	126030633	126030632	+	RAMPAGE_only	12	12	17	0.820453	3.625000	chr12	126030296	126030746	LTR|ERVK|LTR22A	+	chr12	126032994	126043485	AC005186.1|ENST00000620193.1	+	126032994,126042438,126043254	126033295,126042583,126043485	0.705882
transverse_colon_female_adult_53_years	chr3	146222301	146222319	146222301	-	High_confidence	10	10	32	1.544382	4.601410	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146206586	146222371	PLSCR4|ENST00000498625.1	-	146206586,146220814,146222064	146206761,146220925,146222371	0.718750
transverse_colon_female_adult_53_years	chr15	85330303	85330318	85330317	-	High_confidence	4	4	10	0.482619	3.169925	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314922	85330329	ADAMTS7P4|ENST00000558365.1	-	85314922,85319857,85330077	85314984,85319995,85330329	0.600000
transverse_colon_female_adult_53_years	chr5	109383494	109383504	109383503	-	High_confidence	3	3	8	0.386095	2.521641	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.875000
transverse_colon_female_adult_53_years	chr20	35732352	35732440	35732439	-	High_confidence	7	7	48	2.316573	4.766939	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.937500
transverse_colon_female_adult_53_years	chr15	80017769	80017793	80017792	-	High_confidence	15	16	52	2.509621	4.215536	chr15	80016339	80017800	LTR|ERV1|LTR12C	+	chr15	79960930	80017771	STRG.102616.2	-	79960930,80017604	79961174,80017771	0.596154
transverse_colon_female_adult_53_years	chr17	41521774	41521776	41521774	-	High_confidence	6	9	12	0.579143	3.277613	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41513745	41521774	KRT15|ENST00000474031.5	-	41513745,41515884,41516103,41516807,41518329,41521684	41515692,41516010,41516265,41516964,41518461,41521774	0.666667
transverse_colon_female_adult_53_years	chr5	156828900	156828917	156828916	-	High_confidence	11	17	26	1.254810	4.053661	chr5	156828816	156828935	SINE|Alu|AluSc	+	chr5	156827733	156828923	STRG.46025.1	-	156827733	156828923	0.692308
transverse_colon_female_adult_53_years	chr9	121313963	121314023	121314002	+	RAMPAGE_only	33	33	109	5.260551	5.121342	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.990826
transverse_colon_female_adult_53_years	chr7	107792206	107792207	107792206	-	RAMPAGE_only	25	27	34	1.640906	4.331977	chr7	107792181	107792709	DNA|hAT-Charlie|MER1A	-	chr7	107765471	107803207	SLC26A3|ENST00000340010.9	-	107765471,107767578,107767765,107772053,107773919,107774776,107776451,107776636,107778174,107779667,107782796,107782979,107783204,107786826,107787356,107789523,107791047,107791829,107793741,107794378,107803110	107765878,107767644,107767908,107772108,107774153,107774872,107776544,107776706,107778281,107779763,107782874,107783093,107783352,107786909,107787509,107789688,107791235,107791940,107793881,107794597,107803207	0.794118
transverse_colon_female_adult_53_years	chr1	179517522	179517558	179517545	+	High_confidence	109	127	364	17.567344	7.349230	chr1	179516075	179517979	LINE|L1|L1PB1	-	chr1	179517550	179556142	STRG.9052.1	+	179517550,179525333,179528326,179533794,179534729,179554511	179517681,179525447,179528431,179533877,179534962,179556142	0.719780
transverse_colon_female_adult_53_years	chr2	200889268	200889318	200889293	-	High_confidence	6	6	32	1.544382	4.706891	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.562500
transverse_colon_female_adult_53_years	chr7	66292886	66292887	66292886	-	High_confidence	9	12	12	0.579143	3.251629	chr7	66286853	66292884	LINE|L1|L1HS	-	chr7	66292079	66292664	STRG.57941.1	-	66292079	66292664	0.750000
transverse_colon_female_adult_53_years	chr4	84299165	84299167	84299166	-	High_confidence	4	7	10	0.482619	2.725481	chr4	84298780	84304810	LINE|L1|L1PA2	+	chr4	83968081	84299169	LOC101928978|NR_125909.1	-	83968081,84012054,84148046,84149218,84243110,84284205,84286668,84293219,84299123	83970110,84012119,84148130,84149256,84243216,84284326,84286827,84293409,84299169	0.500000
transverse_colon_female_adult_53_years	chrX	48683362	48683363	48683362	+	High_confidence	27	38	38	1.833953	4.892147	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.894737
transverse_colon_female_adult_53_years	chr2	227534888	227534917	227534916	+	RAMPAGE_only	3	3	8	0.386095	2.807355	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.500000
transverse_colon_female_adult_53_years	chr7	101308295	101308325	101308299	+	High_confidence	10	12	47	2.268311	4.764814	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.978723
transverse_colon_female_adult_53_years	chr17	41996310	41996341	41996310	-	RAMPAGE_only	2	2	10	0.482619	2.721928	chr17	41996098	41996284	SINE|MIR|MIRc	-	chr17	41981983	41988873	DNAJC7|ENST00000586335.1	-	41981983,41982254,41983562,41987594,41987818,41988731	41982007,41982401,41983636,41987694,41987910,41988873	0.800000
transverse_colon_female_adult_53_years	chr3	75502388	75502409	75502388	+	High_confidence	25	27	71	3.426597	5.200801	chr3	75502089	75503728	LTR|ERV1|HERVS71-int	-	chr3	75502398	75503202	STRG.27187.1	+	75502398	75503202	0.901408
transverse_colon_female_adult_53_years	chr12	16353884	16353885	16353884	+	High_confidence	38	40	43	2.075263	3.827567	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.790698
transverse_colon_female_adult_53_years	chr19	9140393	9140428	9140393	+	High_confidence	56	56	212	10.231530	6.645118	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140392	9158262	STRG.114697.4	+	9140392,9155924,9156611	9140592,9156041,9158262	0.580189
transverse_colon_female_adult_53_years	chr4	4032585	4032596	4032585	+	High_confidence	163	166	267	12.885936	5.928365	chr4	4031112	4033931	LTR|ERV1|HERVS71-int	-	chr4	4032592	4036436	STRG.32152.1	+	4032592,4036312	4033183,4036436	0.928839
transverse_colon_female_adult_53_years	chr4	86453161	86453203	86453202	-	High_confidence	10	13	50	2.413097	4.813722	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.820000
transverse_colon_female_adult_53_years	chr13	26972117	26972180	26972179	+	High_confidence	2	2	9	0.434357	3.000000	chr13	26972052	26972335	LINE|L2|L2c	-	chr13	26972388	26972779	STRG.91545.1	+	26972388	26972779	0.555556
transverse_colon_female_adult_53_years	chr20	24930628	24930651	24930639	+	High_confidence	71	74	323	15.588604	6.663794	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930632	24932955	STRG.119477.1	+	24930632,24931346	24930774,24932955	0.913313
transverse_colon_female_adult_53_years	chr11	118647713	118647733	118647732	+	RAMPAGE_only	3	3	7	0.337834	2.584963	chr11	118647666	118647768	SINE|MIR|MIRb	-	chr11	118646333	118657152	PHLDB1|ENST00000526537.2	+	118646333,118650076,118650444,118655604,118656682	118648076,118650193,118650547,118655690,118657152	0.571429
transverse_colon_female_adult_53_years	chr17	50657817	50657879	50657834	+	High_confidence	4	4	35	1.689168	4.614997	chr17	50657721	50657878	SINE|MIR|MIRb	+	chr17	50658142	50663855	ABCC3|ENST00000515585.1	+	50658142,50658434,50659236,50663680	50658207,50658546,50659368,50663855	0.514286
transverse_colon_female_adult_53_years	chr3	108375786	108375788	108375786	+	RAMPAGE_only	3	5	8	0.386095	2.807355	chr3	108375646	108375863	LTR|ERVL|LTR33	-	chr3	108353655	108378285	HHLA2|ENST00000482099.1	+	108353655,108355114,108357843,108362341,108375749,108376492	108353780,108355381,108358161,108362446,108375800,108378285	0.875000
transverse_colon_female_adult_53_years	chr5	122477121	122477143	122477142	-	High_confidence	11	13	34	1.640906	4.862576	chr5	122475917	122478731	LTR|ERV1|HERVH-int	-	chr5	122444658	122477090	MGC32805|ENST00000505546.1	-	122444658,122476787	122444913,122477090	0.558824
transverse_colon_female_adult_53_years	chr13	24326605	24326606	24326605	-	RAMPAGE_only	9	13	13	0.627405	3.392747	chr13	24324053	24327020	LINE|L1|L1ME1	+	chr13	24322213	24323209	STRG.91513.1	-	24322213	24323209	0.615385
transverse_colon_female_adult_53_years	chr14	64934140	64934242	64934228	+	RAMPAGE_only	8	8	37	1.785692	3.841097	chr14	64934061	64934368	SINE|Alu|AluSx	+	chr14	64914360	64935368	CHURC1|NM_001204064.1	+	64914360,64923990,64932137	64914534,64924126,64935368	1.000000
transverse_colon_female_adult_53_years	chr19	48868595	48868617	48868595	-	High_confidence	97	98	422	20.366536	7.121601	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.988152
transverse_colon_female_adult_53_years	chrX	7147267	7147288	7147287	+	High_confidence	15	16	32	1.544382	4.631616	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147283	7354330	STRG.124687.1	+	7147283,7190883,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147606,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354330	0.687500
transverse_colon_female_adult_53_years	chr7	104926606	104926641	104926626	-	High_confidence	29	30	68	3.281811	5.447613	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104911915	104926630	LHFPL3-AS2|ENST00000453666.2	-	104911915,104915705,104917559,104920384,104926452	104912076,104915827,104917980,104920425,104926630	0.544118
transverse_colon_female_adult_53_years	chr19	55333909	55333970	55333909	-	High_confidence	5	5	29	1.399596	4.310443	chr19	55333705	55334001	LINE|L1|L1MB5	-	chr19	55319463	55334048	TMEM150B|ENST00000592891.1	-	55319463,55320390,55320557,55320968,55322647,55333903	55320166,55320458,55320617,55321093,55322743,55334048	0.620690
transverse_colon_female_adult_53_years	chr8	100336285	100336318	100336308	+	High_confidence	17	18	58	2.799192	4.740528	chr8	100336300	100336359	DNA|hAT-Charlie|MER102b	-	chr8	100336271	100336909	STRG.66913.1	+	100336271	100336909	0.879310
transverse_colon_female_adult_53_years	chr4	184343887	184343908	184343887	-	High_confidence	4	4	9	0.434357	2.947703	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184340572	184344404	STRG.39300.3	-	184340572,184343552	184342053,184344404	1.000000
transverse_colon_female_adult_53_years	chr19	15681933	15681957	15681933	+	High_confidence	4	4	9	0.434357	2.750000	chr19	15681898	15682076	SINE|MIR|MIRb	-	chr19	15681500	15697143	CYP4F12|ENST00000546608.1	+	15681500,15683492,15685067,15695935,15696160,15696907	15682514,15684882,15685197,15696069,15696512,15697143	0.888889
transverse_colon_female_adult_53_years	chr11	65431654	65431855	65431654	+	RAMPAGE_only	10	17	165	7.963219	6.276095	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65423637	65445540	STRG.81845.2	+	65423637,65426060,65439492	65425737,65439402,65445540	1.000000
transverse_colon_female_adult_53_years	chr5	149984396	149985087	149984567	+	RAMPAGE_only	52	52	1302	62.837037	7.312281	chr5	149984377	149984678	SINE|Alu|AluSc8	+	chr5	149960784	149987405	STRG.45782.5	+	149960784,149977627	149960979,149987405	0.999232
transverse_colon_female_adult_53_years	chr17	41206899	41206900	41206899	-	RAMPAGE_only	6	6	8	0.386095	2.521641	chr17	41200867	41206900	LINE|L1|L1PA2	-	chr17	41184101	41185342	KRTAP4-1|ENST00000398472.1	-	41184101	41185342	0.750000
transverse_colon_female_adult_53_years	chr4	75127193	75127272	75127193	-	High_confidence	25	27	167	8.059743	6.130564	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75075140	75127670	STRG.34677.2	-	75075140,75084588,75127065	75082357,75084703,75127670	0.700599
transverse_colon_female_adult_53_years	chr8	56559496	56559497	56559496	-	High_confidence	46	48	58	2.799192	5.363506	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56559029	56559278	STRG.64820.1	-	56559029	56559278	0.551724
transverse_colon_female_adult_53_years	chr4	9577223	9577248	9577245	+	RAMPAGE_only	4	4	12	0.579143	2.913977	chr4	9577069	9578641	LTR|ERVL-MaLR|THE1B-int	+	chr4	9575824	9613890	STRG.32577.11	+	9575824	9613890	0.916667
transverse_colon_female_adult_53_years	chr20	34546839	34546859	34546843	+	High_confidence	162	167	449	21.669608	7.695544	chr20	34546707	34546884	LTR|ERVL-MaLR|MLT1J	-	chr20	34546853	34560343	STRG.119637.3	+	34546853,34549904,34559207,34559346,34559735	34546916,34558908,34559263,34559453,34560343	0.786192
transverse_colon_female_adult_53_years	chr3	197454344	197454349	197454344	+	High_confidence	20	20	40	1.930477	4.903056	chr3	197454171	197454554	LINE|CR1|L3	+	chr3	197454494	197454965	STRG.31821.1	+	197454494	197454965	0.525000
transverse_colon_female_adult_53_years	chr12	109053947	109053957	109053956	-	High_confidence	14	16	48	2.316573	5.011842	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.708333
transverse_colon_female_adult_53_years	chr12	46243267	46243305	46243267	-	RAMPAGE_only	3	3	18	0.868715	3.410417	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.944444
transverse_colon_female_adult_53_years	chr9	122164574	122164596	122164595	+	High_confidence	21	26	36	1.737430	4.422001	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122164614	122174568	MORN5|ENST00000418632.1	+	122164614,122166767,122169644,122174495	122164647,122166915,122169756,122174568	0.666667
transverse_colon_female_adult_53_years	chr3	195688724	195688758	195688752	+	High_confidence	2	2	9	0.434357	3.000000	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688755	195708806	MUC20-OT1|ENST00000628547.2	+	195688755,195689338,195696360,195699029,195708133,195708746	195688797,195689438,195696589,195699178,195708435,195708806	0.777778
transverse_colon_female_adult_53_years	chr4	170226587	170226588	170226587	+	High_confidence	291	300	377	18.194749	6.904551	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.527851
transverse_colon_female_adult_53_years	chr8	144063432	144063458	144063457	-	High_confidence	24	24	58	2.799192	5.267211	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144063116	144063461	STRG.68506.1	-	144063116	144063461	0.517241
transverse_colon_female_adult_53_years	chr1	86521117	86521121	86521117	+	High_confidence	14	14	32	1.544382	4.663910	chr1	86520963	86521311	LINE|L2|L2c	-	chr1	86521895	86522729	STRG.5024.1	+	86521895	86522729	0.593750
transverse_colon_female_adult_53_years	chrX	32854138	32854151	32854150	-	RAMPAGE_only	10	10	21	1.013501	4.011365	chrX	32851464	32854639	LINE|L1|L1MA3	+	chrX	32573610	32849802	DMD|ENST00000447523.1	-	32573610,32573744,32823294,32844782,32849727	32573637,32573846,32823387,32844860,32849802	0.714286
transverse_colon_female_adult_53_years	chr4	48676174	48676175	48676174	+	High_confidence	142	146	179	8.638886	5.455723	chr4	48675158	48676488	LTR|ERV1|LTR12C	+	chr4	48676183	48679131	STRG.34178.1	+	48676183	48679131	0.972067
transverse_colon_female_adult_53_years	chr22	46171505	46171549	46171538	+	RAMPAGE_only	9	10	39	1.882215	4.964904	chr22	46171297	46171902	LINE|L2|L2a	-	chr22	46176747	46235403	PPARA|ENST00000402126.1	+	46176747,46198344,46215172,46218262,46219811,46231791,46235132	46176836,46198591,46215333,46218401,46220014,46232239,46235403	0.589744
transverse_colon_female_adult_53_years	chr20	50131135	50131162	50131139	-	High_confidence	7	8	21	1.013501	3.646439	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.952381
transverse_colon_female_adult_53_years	chr11	15768351	15768352	15768351	-	High_confidence	1985	2019	2808	135.519509	7.787690	chr11	15768094	15768378	LTR|ERVL-MaLR|MLT1N2	-	chr11	15701275	15768383	STRG.80123.1	-	15701275,15702281,15703750,15704543,15714335,15716120,15725679,15768217	15702183,15702342,15703809,15704620,15714378,15716278,15725791,15768383	0.563390
transverse_colon_female_adult_53_years	chr7	76591605	76591616	76591615	-	High_confidence	3	3	7	0.337834	2.584963	chr7	76590244	76592675	LINE|L1|L1PA15	+	chr7	76571334	76591759	STRG.58786.1	-	76571334,76591423	76574177,76591759	0.714286
transverse_colon_female_adult_53_years	chr15	60402878	60402888	60402878	-	RAMPAGE_only	2	3	6	0.289572	2.584963	chr15	60402666	60403161	LINE|L2|L2c	+	chr15	60351732	60398742	ANXA2|ENST00000559818.5	-	60351732,60352382,60354153,60355918,60357145,60360940,60364428,60382341,60386027,60398644	60351819,60352476,60354213,60355998,60357236,60361054,60364523,60382441,60386086,60398742	0.666667
transverse_colon_female_adult_53_years	chr15	88635654	88635670	88635654	+	High_confidence	47	50	143	6.901456	6.047573	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303234.1	+	88635636,88636166,88639342,88652109,88655414	88635700,88636292,88639594,88652310,88656344	0.538462
transverse_colon_female_adult_53_years	chr15	43133126	43133135	43133126	+	High_confidence	3	3	8	0.386095	2.807355	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133143	43148788	TMEM62|ENST00000569535.5	+	43133143,43135511,43146492,43148754	43133402,43135649,43146634,43148788	0.500000
transverse_colon_female_adult_53_years	chr19	17336685	17336727	17336685	+	High_confidence	29	30	73	3.523121	5.390954	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.780822
transverse_colon_female_adult_53_years	chr6	26474345	26474346	26474345	+	High_confidence	5	5	7	0.337834	2.521641	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26474335	26474739	STRG.48211.1	+	26474335	26474739	0.571429
transverse_colon_female_adult_53_years	chr20	3869424	3869508	3869486	+	RAMPAGE_only	3	3	14	0.675667	3.664498	chr20	3869472	3869587	SINE|Alu|AluJr4	-	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.928571
transverse_colon_female_adult_53_years	chr12	46254866	46254897	46254866	-	RAMPAGE_only	2	2	10	0.482619	2.725481	chr12	46253756	46255325	LTR|ERV1|MER41-int	-	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.700000
transverse_colon_female_adult_53_years	chr2	88784890	88784891	88784890	+	RAMPAGE_only	9	9	9	0.434357	2.725481	chr2	88784858	88784980	DNA|hAT-Charlie|MER5A1	-	chr2	88782711	88805403	ANKRD36BP2|ENST00000575193.1	+	88782711,88782852,88784597,88784720,88786469,88786590,88788317,88788441,88792420,88797281,88801053,88802712,88804379,88804786,88805378	88782762,88782925,88784626,88784793,88786498,88786663,88788346,88788514,88792494,88797423,88801309,88802865,88804450,88804880,88805403	0.777778
transverse_colon_female_adult_53_years	chr12	22662501	22662543	22662542	+	RAMPAGE_only	7	11	27	1.303072	3.272813	chr12	22662387	22662697	SINE|Alu|AluJr	-	chr12	22625356	22684551	STRG.86272.3	+	22625356,22643762,22659013,22661062,22662342,22673499,22684482	22625586,22644022,22659154,22662155,22671355,22673660,22684551	1.000000
transverse_colon_female_adult_53_years	chr1	197691968	197691988	197691968	-	RAMPAGE_only	4	4	8	0.386095	2.500000	chr1	197690937	197692135	LINE|L1|L1MB1	+	chr1	197605481	197658350	DENND1B|ENST00000496935.1	-	197605481,197611930,197617658,197642710,197645689,197652234,197658299	197607174,197611976,197617759,197642821,197645743,197652315,197658350	0.500000
transverse_colon_female_adult_53_years	chr10	89888929	89888962	89888961	+	RAMPAGE_only	10	10	22	1.061763	3.458525	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.545455
transverse_colon_female_adult_53_years	chr1	17084601	17084682	17084615	-	RAMPAGE_only	4	4	25	1.206548	3.699471	chr1	17084357	17084577	SINE|MIR|MIRb	-	chr1	17067785	17083426	PADI2|ENST00000466151.1	-	17067785,17070087,17071405,17074855,17079263,17082544,17083235	17069277,17070216,17071491,17075823,17079415,17083138,17083426	0.760000
transverse_colon_female_adult_53_years	chrX	147937525	147937549	147937548	+	RAMPAGE_only	3	3	11	0.530881	2.721928	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.909091
transverse_colon_female_adult_53_years	chr6	46003779	46003788	46003779	-	RAMPAGE_only	4	4	8	0.386095	2.750000	chr6	46003689	46003847	DNA|hAT-Charlie|MER5A	-	chr6	45997374	46005975	STRG.49686.1	-	45997374,46000048	45999721,46005975	1.000000
transverse_colon_female_adult_53_years	chr21	22041320	22041350	22041320	-	RAMPAGE_only	2	2	9	0.434357	3.000000	chr21	22039560	22041431	LINE|L1|L1PA13	-	chr21	22025993	22062693	STRG.121196.1	-	22025993,22042944,22062008,22062553	22041435,22043087,22062165,22062693	0.888889
transverse_colon_female_adult_53_years	chr18	46087042	46087061	46087042	-	High_confidence	3	3	10	0.482619	2.503258	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.900000
transverse_colon_female_adult_53_years	chr17	62507197	62507200	62507199	+	RAMPAGE_only	4	7	10	0.482619	2.721928	chr17	62507124	62507291	SINE|Alu|AluSp	+	chr17	62479245	62523141	TLK2|ENST00000583690.6	+	62479245,62481120,62507380,62508407,62520772,62522203,62523133	62479290,62481206,62507449,62508553,62520844,62522273,62523141	1.000000
transverse_colon_female_adult_53_years	chr4	92026135	92026139	92026135	+	High_confidence	52	53	82	3.957479	5.720178	chr4	92025771	92026242	LTR|ERV1|LTR7Y	+	chr4	92026149	92028438	STRG.35786.2	+	92026149,92027874	92026388,92028438	0.658537
transverse_colon_female_adult_53_years	chr3	24505749	24505761	24505760	-	High_confidence	20	26	64	3.088764	5.274666	chr3	24505476	24505915	LTR|ERVL-MaLR|MLT1H	-	chr3	24505169	24505751	STRG.24526.1	-	24505169	24505751	0.750000
transverse_colon_female_adult_53_years	chr10	103890267	103890286	103890285	-	RAMPAGE_only	59	60	112	5.405337	5.642002	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103917669	STN1|ENST00000369764.1	-	103882554,103889071,103892129,103897547,103898876,103900061,103905090,103910526,103917461	103882841,103889144,103892252,103897719,103899000,103900223,103905156,103910622,103917669	0.892857
transverse_colon_female_adult_53_years	chr20	25296855	25296931	25296873	+	RAMPAGE_only	10	11	66	3.185288	4.395778	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	1.000000
transverse_colon_female_adult_53_years	chr11	112152316	112152369	112152368	-	RAMPAGE_only	5	6	30	1.447858	4.253434	chr11	112151537	112152480	LINE|L2|L2c	+	chr11	112143260	112164074	STRG.83899.3	-	112143260,112148602,112150071,112154974,112163905	112143817,112148736,112153603,112155061,112164074	0.933333
transverse_colon_female_adult_53_years	chr12	20413420	20413763	20413420	+	RAMPAGE_only	8	8	153	7.384076	6.033726	chr12	20413309	20413508	DNA|hAT-Charlie|MER107	-	chr12	20392569	20509770	STRG.86262.4	+	20392569,20395554	20395496,20509770	0.993464
transverse_colon_female_adult_53_years	chr6	168093055	168093063	168093055	-	High_confidence	12	12	25	1.206548	4.133661	chr6	168092887	168093246	LTR|ERVL-MaLR|THE1B	-	chr6	168053165	168093012	FRMD1|ENST00000646385.1	-	168053165,168059123,168060760,168061806,168062670,168062893,168063600,168064870,168066754,168067366,168075244,168078881,168081342,168092970	168057339,168059188,168061057,168061981,168062739,168062959,168063756,168065057,168066831,168067446,168075335,168079024,168081862,168093012	0.760000
transverse_colon_female_adult_53_years	chr16	30354679	30354682	30354679	-	High_confidence	6	8	15	0.723929	3.506891	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	1.000000
transverse_colon_female_adult_53_years	chr9	81689492	81689524	81689519	-	High_confidence	292	292	921	44.449241	5.942688	chr9	81689312	81689527	LTR|ERV1|MER52D	-	chr9	81583682	81689535	TLE1|NM_001303103.1	-	81583682,81584447,81585504,81587680,81590804,81593024,81610219,81611768,81613376,81615981,81616645,81620440,81633347,81634096,81652183,81653973,81685675,81685832,81687333,81688216	81584305,81584524,81585655,81587828,81591052,81593274,81610296,81611959,81613521,81616134,81616699,81620557,81633364,81634301,81652288,81654036,81685720,81685896,81687434,81689535	0.991314
transverse_colon_female_adult_53_years	chr19	54617130	54617148	54617147	+	High_confidence	21	21	50	2.413097	5.108758	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.640000
transverse_colon_female_adult_53_years	chr3	197299316	197299321	197299316	-	High_confidence	26	26	47	2.268311	5.091853	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.914894
transverse_colon_female_adult_53_years	chr12	46243222	46243246	46243245	-	RAMPAGE_only	2	2	7	0.337834	2.807355	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	1.000000
transverse_colon_female_adult_53_years	chr11	114639010	114639012	114639010	-	RAMPAGE_only	4	8	11	0.530881	3.121928	chr11	114633465	114639620	LINE|L1|L1PA3	-	chr11	114633589	114651608	STRG.84086.19	-	114633589,114648240,114651162	114639619,114648345,114651608	0.909091
transverse_colon_female_adult_53_years	chr9	121356287	121356293	121356287	-	RAMPAGE_only	4	5	11	0.530881	3.321928	chr9	121356223	121356327	SINE|MIR|MIRb	-	chr9	121339076	121370205	STOM|ENST00000286713.6	-	121339076,121348014,121349119,121353219,121354600,121356052,121370126	121341408,121348149,121349323,121353302,121354673,121356156,121370205	0.727273
transverse_colon_female_adult_53_years	chrX	115935232	115935277	115935232	-	RAMPAGE_only	3	3	13	0.627405	3.238901	chrX	115931093	115936482	LINE|L1|L1MA1	-	chrX	115928062	115969169	STRG.128279.4	-	115928062,115968960	115946456,115969169	1.000000
transverse_colon_female_adult_53_years	chr10	110885060	110885071	110885060	+	High_confidence	7	10	17	0.820453	3.499228	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110885252	110898122	PDCD4|ENST00000462577.5	+	110885252,110887664,110890599,110894090,110894411,110895947,110898027	110885366,110887814,110890670,110894198,110894522,110896087,110898122	0.764706
transverse_colon_female_adult_53_years	chr12	46185895	46185985	46185984	-	RAMPAGE_only	8	8	43	2.075263	4.963746	chr12	46185953	46186190	DNA|TcMar-Tigger|Tigger16b	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.976744
transverse_colon_female_adult_53_years	chr1	34685295	34685409	34685308	-	High_confidence	45	45	352	16.988201	7.664928	chr1	34685288	34685485	LTR|ERVL-MaLR|MLT1G	-	chr1	34529663	34685400	STRG.1654.3	-	34529663,34559113,34560956,34604472,34615563,34685164	34547629,34559247,34561068,34604577,34615695,34685400	0.599432
transverse_colon_female_adult_53_years	chr11	47214443	47214463	47214462	+	High_confidence	3	3	8	0.386095	3.000000	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214464	47216873	DDB2|ENST00000622878.4	+	47214464,47215070,47216335,47216857	47214674,47215263,47216472,47216873	0.500000
transverse_colon_female_adult_53_years	chr11	76963523	76963539	76963538	-	RAMPAGE_only	5	5	12	0.579143	3.277613	chr11	76963508	76963722	LTR|ERV1|MER41E	-	chr11	76955416	76978619	AP002498.1|ENST00000530190.1	-	76955416,76958833,76978400	76955585,76959013,76978619	0.750000
transverse_colon_female_adult_53_years	chr13	24968470	24968482	24968470	-	High_confidence	3	3	9	0.434357	2.500000	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24928754	24968469	TPTE2P1|NR_026730.1	-	24928754,24941986,24942931,24951396,24968205	24934663,24942108,24943021,24951488,24968469	0.555556
transverse_colon_female_adult_53_years	chr15	97875618	97875644	97875618	-	High_confidence	12	23	48	2.316573	4.785702	chr15	97875560	97876737	LTR|ERV1|LTR12D	+	chr15	97875332	97875606	STRG.103472.1	-	97875332	97875606	0.562500
transverse_colon_female_adult_53_years	chr3	156540569	156540570	156540569	-	RAMPAGE_only	15	15	18	0.868715	2.822182	chr3	156540323	156540630	SINE|Alu|AluY	+	chr3	156539552	156554125	SSR3|NM_001308205.1	-	156539552,156544307,156548904,156553654,156553992	156543269,156544439,156549003,156553781,156554125	0.888889
transverse_colon_female_adult_53_years	chr1	29166059	29166072	29166059	-	RAMPAGE_only	3	3	6	0.289572	2.584963	chr1	29165912	29166153	SINE|tRNA-RTE|MamSINE1	-	chr1	29154696	29160563	SRSF4|ENST00000497015.5	-	29154696,29159373,29160374	29154910,29159486,29160563	0.500000
transverse_colon_female_adult_53_years	chr16	20676201	20676202	20676201	-	High_confidence	7	7	9	0.434357	2.750000	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.666667
transverse_colon_female_adult_53_years	chr14	67478414	67478426	67478414	-	RAMPAGE_only	2	2	8	0.386095	2.500000	chr14	67478346	67478698	LINE|L2|L2c	+	chr14	67470265	67515304	TMEM229B|NM_182526.2	-	67470265,67486999,67515085	67473941,67487172,67515304	0.500000
transverse_colon_female_adult_53_years	chr17	1115362	1115409	1115408	-	High_confidence	18	21	95	4.584884	5.198888	chr17	1115307	1115433	LINE|L2|L2b	+	chr17	1072732	1115436	ABR|ENST00000570441.5	-	1072732,1073624,1079329,1083519,1091664,1100636,1115275	1072754,1073677,1079390,1083627,1091850,1100735,1115436	0.915789
transverse_colon_female_adult_53_years	chr5	149983822	149983995	149983822	+	RAMPAGE_only	14	14	134	6.467099	5.336044	chr5	149983581	149983876	SINE|Alu|AluJr	-	chr5	149960784	149987405	STRG.45782.5	+	149960784,149977627	149960979,149987405	0.992537
transverse_colon_female_adult_53_years	chr1	161206434	161206498	161206434	+	High_confidence	6	6	23	1.110024	3.880180	chr1	161206361	161206444	SINE|tRNA|LFSINE_Vert	+	chr1	161206408	161214239	STRG.7707.3	+	161206408,161209192,161209482,161209856,161210110,161210303,161210590,161212350,161213379,161213648,161213863,161214155	161206597,161209313,161209595,161209931,161210188,161210389,161210710,161212480,161213475,161213732,161213921,161214239	0.782609
transverse_colon_female_adult_53_years	chr4	110411266	110411335	110411334	+	RAMPAGE_only	48	48	138	6.660147	6.247898	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110476072	110565285	ENPEP|ENST00000265162.9	+	110476072,110488540,110491032,110506636,110509652,110510244,110513414,110515376,110520007,110520214,110531197,110542750,110543014,110548175,110549345,110549527,110549715,110553314,110559646,110561405	110477058,110488682,110491164,110506757,110509807,110510358,110513549,110515442,110520073,110520366,110531277,110542887,110543070,110548326,110549419,110549632,110549886,110553455,110559725,110565285	0.666667
transverse_colon_female_adult_53_years	chrX	73841834	73841877	73841876	-	High_confidence	14	15	34	1.640906	3.726737	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.941176
transverse_colon_female_adult_53_years	chr12	6356415	6356457	6356415	-	High_confidence	3	3	17	0.820453	3.750000	chr12	6356219	6356436	LINE|L2|L2b	+	chr12	6355391	6356293	SCNN1A|ENST00000536087.1	-	6355391,6355776	6355435,6356293	0.882353
transverse_colon_female_adult_53_years	chr8	61578141	61578142	61578141	+	High_confidence	1403	1426	1443	69.641970	6.206393	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578219	61579668	KRT8P3|ENST00000519669.1	+	61578219	61579668	0.979903
transverse_colon_female_adult_53_years	chr8	118343981	118343998	118343982	-	RAMPAGE_only	3	5	10	0.482619	2.646439	chr8	118343834	118344019	SINE|MIR|MIRb	+	chr8	118337183	118366815	STRG.67682.6	-	118337183	118366815	1.000000
transverse_colon_female_adult_53_years	chr6	2881607	2881636	2881635	-	High_confidence	8	8	18	0.868715	3.794653	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854627	2881636	STRG.47319.1	-	2854627,2881525	2855690,2881636	0.500000
transverse_colon_female_adult_53_years	chr11	65427829	65428525	65428524	+	RAMPAGE_only	95	98	2708	130.693315	7.663966	chr11	65428531	65428593	DNA|hAT-Tip100|MamRep4096	+	chr11	65423637	65445540	STRG.81845.2	+	65423637,65426060,65439492	65425737,65439402,65445540	0.999631
transverse_colon_female_adult_53_years	chr3	195688686	195688694	195688686	+	High_confidence	3	3	11	0.530881	2.913977	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688755	195708806	MUC20-OT1|ENST00000628547.2	+	195688755,195689338,195696360,195699029,195708133,195708746	195688797,195689438,195696589,195699178,195708435,195708806	0.636364
transverse_colon_female_adult_53_years	chr8	141278084	141278085	141278084	-	RAMPAGE_only	13	13	14	0.675667	3.180833	chr8	141277917	141278080	SINE|Alu|AluJr4	-	chr8	141207165	141254629	SLC45A4|NM_001286646.1	-	141207165,141212196,141215758,141217089,141218010,141219649,141221576,141253988	141211697,141212556,141215970,141217189,141219029,141219829,141221765,141254629	0.785714
transverse_colon_female_adult_53_years	chr3	120596707	120596754	120596753	-	High_confidence	4	4	21	1.013501	3.932138	chr3	120596706	120596936	SINE|MIR|MIR	+	chr3	120596051	120596780	STRG.28910.1	-	120596051	120596780	0.809524
transverse_colon_female_adult_53_years	chr16	81181319	81181331	81181330	-	High_confidence	4	4	11	0.530881	3.321928	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.727273
transverse_colon_female_adult_53_years	chr11	114650738	114650758	114650740	+	High_confidence	21	26	47	2.268311	4.687464	chr11	114650014	114651054	LINE|L1|L1MCc	+	chr11	114650403	114715651	STRG.84100.1	+	114650403,114651241,114679656,114698044,114703990,114705780,114706394	114651045,114651425,114679762,114698778,114704052,114705996,114715651	0.893617
transverse_colon_female_adult_53_years	chr15	45449836	45449842	45449841	+	High_confidence	5	6	9	0.434357	3.000000	chr15	45449608	45449894	LINE|L2|L2c	-	chr15	45450117	45477479	STRG.100726.15	+	45450117,45460445,45476401	45459050,45460569,45477479	0.888889
transverse_colon_female_adult_53_years	chr12	57050719	57050720	57050719	-	High_confidence	91	108	108	5.212289	5.895898	chr12	57050705	57050920	SINE|MIR|MIRc	-	chr12	57028516	57050765	MYO1A|NM_001256041.1	-	57028516,57029131,57029434,57029739,57030209,57031039,57036306,57036771,57036941,57037547,57037868,57038411,57038808,57039211,57041183,57041431,57043071,57043239,57043855,57044105,57046551,57046862,57047060,57047302,57047626,57047988,57048209,57049886,57050717	57028881,57029259,57029587,57029872,57030316,57031174,57036381,57036840,57037091,57037641,57038069,57038638,57039009,57039274,57041288,57041497,57043158,57043358,57044003,57044209,57046650,57046926,57047107,57047407,57047721,57048104,57048343,57050106,57050765	0.898148
transverse_colon_female_adult_53_years	chr16	29760841	29760853	29760852	+	High_confidence	2	2	7	0.337834	2.584963	chr16	29760474	29761018	LTR|ERVL-MaLR|MLT1G1	+	chr16	29760739	29780491	STRG.106215.2	+	29760739,29779259,29779504,29780103	29760949,29779321,29779637,29780491	0.857143
transverse_colon_female_adult_53_years	chr12	53464809	53464834	53464809	+	RAMPAGE_only	2	2	7	0.337834	2.584963	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479614	STRG.87658.14	+	53462513,53464759,53465931,53467220,53468776,53471637,53479405	53462567,53464852,53465973,53467843,53468832,53471807,53479614	0.714286
transverse_colon_female_adult_53_years	chr6	127330831	127330840	127330831	-	High_confidence	2	2	9	0.434357	2.500000	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.888889
transverse_colon_female_adult_53_years	chr4	4031694	4031707	4031694	+	RAMPAGE_only	5	5	12	0.579143	3.277613	chr4	4031112	4033931	LTR|ERV1|HERVS71-int	-	chr4	4037920	4046176	STRG.32152.2	+	4037920,4042060	4039012,4046176	0.500000
transverse_colon_female_adult_53_years	chr14	95664816	95664817	95664816	+	High_confidence	11	11	16	0.772191	3.323231	chr14	95664736	95664975	LTR|ERVL-MaLR|MLT1H	-	chr14	95664861	95670414	TCL6|ENST00000486671.1	+	95664861,95668125	95665076,95670414	0.750000
transverse_colon_female_adult_53_years	chr1	116984584	116984588	116984587	+	RAMPAGE_only	4	4	8	0.386095	2.807355	chr1	116984390	116984612	SINE|MIR|MIR	+	chr1	116910056	116990358	PTGFRN|ENST00000393203.2	+	116910056,116941714,116944678,116949191,116961242,116966910,116974215,116984679,116986800	116910252,116942083,116945092,116949572,116961668,116967330,116974323,116984985,116990358	0.875000
transverse_colon_female_adult_53_years	chr15	40894518	40894544	40894518	+	High_confidence	3	3	9	0.434357	2.750000	chr15	40894565	40894630	LINE|CR1|X6A_LINE	+	chr15	40894466	40909432	STRG.100339.1	+	40894466,40895937,40898906,40899143,40902615,40908828	40894859,40896079,40898998,40901014,40903831,40909432	0.888889
transverse_colon_female_adult_53_years	chr5	59301068	59301087	59301086	-	RAMPAGE_only	16	17	36	1.737430	4.704511	chr5	59300586	59301126	LTR|ERVL|MER21A	-	chr5	58969037	59276119	PDE4D|NM_001197220.1	-	58969037,58975656,58976349,58977190,58988492,58989754,58990803,58991831,58993371,59038858,59180594,59185188,59193499,59215776,59275337	58975080,58975839,58976472,58977345,58988592,58989919,58990902,58992004,58993465,59038971,59180644,59185262,59193536,59215968,59276119	0.666667
transverse_colon_female_adult_53_years	chr1	246689692	246689778	246689699	+	High_confidence	3	4	35	1.689168	4.597276	chr1	246689571	246689829	LTR|ERVL|LTR41	+	chr1	246690046	246691821	AL591848.2|ENST00000442712.1	+	246690046,246691467	246690214,246691821	0.657143
transverse_colon_female_adult_53_years	chr2	74908959	74908962	74908959	+	High_confidence	57	57	115	5.550122	5.673056	chr2	74908797	74909521	LTR|ERV1|LTR1C	+	chr2	74908973	74910378	STRG.15695.1	+	74908973	74910378	0.695652
transverse_colon_female_adult_53_years	chr4	110134879	110134906	110134879	+	High_confidence	3	5	10	0.482619	2.646439	chr4	110134680	110134965	SINE|Alu|AluJr	+	chr4	110134611	110138695	STRG.36826.1	+	110134611	110138695	0.900000
transverse_colon_female_adult_53_years	chr15	89852590	89852631	89852630	-	RAMPAGE_only	22	37	73	3.523121	5.895170	chr15	89852343	89852609	LINE|CR1|L3	-	chr15	89835423	89837954	AP3S2|ENST00000558926.1	-	89835423,89837614	89835643,89837954	0.520548
transverse_colon_female_adult_53_years	chr12	7502477	7502537	7502519	-	High_confidence	5	9	33	1.592644	4.518397	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.939394
transverse_colon_female_adult_53_years	chr1	151366049	151366096	151366095	-	RAMPAGE_only	3	3	12	0.579143	3.022055	chr1	151365988	151366096	LINE|L2|L2a	+	chr1	151364304	151372705	SELENBP1|ENST00000474352.5	-	151364304,151364925,151365188,151365767,151366721,151368198,151369003,151372637	151364705,151365044,151365684,151366453,151366904,151368319,151369769,151372705	1.000000
transverse_colon_female_adult_53_years	chr13	39025572	39025621	39025620	-	High_confidence	3	3	15	0.723929	3.773557	chr13	39025332	39025814	LTR|ERVL-MaLR|MLT1F	+	chr13	39022353	39026472	PROSER1|ENST00000496138.2	-	39022353,39023051,39024472,39026276	39022412,39023130,39024556,39026472	0.533333
transverse_colon_female_adult_53_years	chr12	122064375	122064376	122064375	+	RAMPAGE_only	9	9	10	0.482619	2.947703	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.700000
transverse_colon_female_adult_53_years	chr1	195721832	195721882	195721832	+	High_confidence	47	48	85	4.102264	5.276865	chr1	195721489	195721970	LTR|ERVK|LTR14C	-	chr1	195721789	195758085	STRG.9785.1	+	195721789,195738115,195749004,195752074,195757775	195722034,195738437,195749147,195752121,195758085	0.752941
transverse_colon_female_adult_53_years	chr4	184343954	184343968	184343967	-	High_confidence	14	16	48	2.316573	4.746115	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184340572	184344404	STRG.39300.3	-	184340572,184343552	184342053,184344404	0.895833
transverse_colon_female_adult_53_years	chr2	198491118	198491137	198491121	+	High_confidence	26	30	76	3.667907	5.557292	chr2	198491086	198491177	LINE|L2|L2a	-	chr2	198491133	198511826	STRG.21446.1	+	198491133	198511826	0.750000
transverse_colon_female_adult_53_years	chr12	31959158	31959201	31959200	+	High_confidence	4	4	17	0.820453	3.219528	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959407	31981060	KIAA1551|ENST00000540924.5	+	31959407,31960776,31980877	31959491,31960871,31981060	0.588235
transverse_colon_female_adult_53_years	chr3	142684036	142684167	142684076	+	RAMPAGE_only	9	9	72	3.474859	5.338337	chr3	142683987	142684094	LINE|RTE-BovB|MamRTE1	+	chr3	142656896	142713664	PLS1|NM_001172312.1	+	142656896,142664201,142669389,142670992,142676156,142678031,142684005,142684252,142686283,142689617,142694468,142697952,142703867,142704462,142711500,142711871	142657180,142664307,142669553,142671122,142676289,142678113,142684171,142684395,142686376,142689813,142694547,142698067,142704001,142704586,142711625,142713664	0.875000
transverse_colon_female_adult_53_years	chr5	148104623	148104624	148104623	+	RAMPAGE_only	33	33	35	1.689168	4.476064	chr5	148104613	148104913	SINE|Alu|AluSx3	+	chr5	148064002	148137289	SPINK5|ENST00000256084.7	+	148064002,148065346,148070322,148072147,148086404,148088541,148089493,148091164,148094353,148095817,148097866,148099233,148100453,148101354,148101780,148104951,148107036,148108752,148111767,148112867,148114361,148116369,148118436,148118985,148120008,148120294,148123832,148124764,148125722,148126982,148131258,148133796,148136982	148064099,148065372,148070450,148072220,148086532,148088605,148089621,148091228,148094481,148095905,148097994,148099315,148100581,148101436,148101908,148105000,148107164,148108837,148111895,148112934,148114489,148116466,148118564,148119058,148120136,148120391,148123960,148124837,148125850,148127079,148131389,148133887,148137289	0.771429
transverse_colon_female_adult_53_years	chr22	35311038	35311077	35311057	+	High_confidence	10	10	34	1.640906	4.454822	chr22	35310706	35311148	LINE|L2|L2c	-	chr22	35311061	35323819	TOM1|ENST00000443206.2	+	35311061,35317876,35321958,35323027,35323495,35323767	35311127,35317961,35322037,35323177,35323630,35323819	0.941176
transverse_colon_female_adult_53_years	chr22	50330658	50330675	50330658	+	RAMPAGE_only	3	3	10	0.482619	2.646439	chr22	50330424	50330745	SINE|Alu|AluY	+	chr22	50343303	50445090	PPP6R2|ENST00000359139.7	+	50343303,50372019,50393892,50406688,50414551,50416091,50418866,50419348,50422253,50423461,50431172,50432264,50434965,50436366,50437505,50437842,50438173,50438598,50439697,50439960,50440821,50443865,50444202	50343550,50372150,50394135,50406875,50414689,50416157,50418979,50419462,50422380,50423614,50431382,50432329,50435081,50436452,50437603,50437900,50438298,50438762,50439857,50440049,50441026,50444117,50445090	0.600000
transverse_colon_female_adult_53_years	chr3	142596124	142596125	142596124	+	High_confidence	12	12	16	0.772191	3.625000	chr3	142595959	142596147	DNA|hAT-Charlie|MER5A	+	chr3	142596386	142713664	PLS1|NM_001145319.1	+	142596386,142664201,142669389,142670992,142676156,142678031,142684005,142684252,142686283,142689617,142694468,142697952,142703867,142704462,142711500,142711871	142596509,142664307,142669553,142671122,142676289,142678113,142684171,142684395,142686376,142689813,142694547,142698067,142704001,142704586,142711625,142713664	0.812500
transverse_colon_female_adult_53_years	chr17	29825744	29825775	29825774	-	RAMPAGE_only	3	3	7	0.337834	2.584963	chr17	29825736	29825852	LINE|RTE-BovB|MamRTE1	-	chr17	29817995	29833711	STRG.109284.15	-	29817995	29833711	0.571429
transverse_colon_female_adult_53_years	chr9	129488803	129488857	129488856	+	High_confidence	16	16	54	2.606144	4.724101	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.925926
transverse_colon_female_adult_53_years	chr20	3873619	3873700	3873653	+	RAMPAGE_only	6	6	33	1.592644	4.116729	chr20	3873549	3873828	LTR|ERVL-MaLR|MLT1A0	+	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.969697
transverse_colon_female_adult_53_years	chr5	14209329	14209349	14209344	+	RAMPAGE_only	3	4	10	0.482619	2.947703	chr5	14209316	14209521	LINE|L1|L1MC5	-	chr5	14183797	14399400	TRIO|ENST00000509967.6	+	14183797,14270824,14280321,14286870,14290715,14293011,14297071,14304460,14316512,14330777,14336535,14358177,14359356,14363731,14364649,14366859,14368707,14369373,14374228,14378011,14381129,14387437,14387731,14388612,14389288,14390230,14390900,14394037,14397042,14398879	14183959,14270899,14280436,14287063,14291228,14293134,14297263,14304592,14316743,14330900,14336727,14358347,14359531,14363927,14364816,14366979,14368899,14369523,14374343,14378127,14381252,14387632,14387847,14388679,14389398,14390300,14390990,14394130,14397154,14399400	0.600000
transverse_colon_female_adult_53_years	chr4	148680527	148680547	148680546	-	High_confidence	836	870	1906	91.987245	6.744328	chr4	148680464	148680625	DNA|hAT-Charlie|MER5A	+	chr4	148622282	148680537	STRG.38241.4	-	148622282,148644525	148644505,148680537	0.971668
transverse_colon_female_adult_53_years	chr9	111284841	111284875	111284874	-	High_confidence	42	44	66	3.185288	5.131994	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.833333
transverse_colon_female_adult_53_years	chr20	33624674	33624708	33624674	+	RAMPAGE_only	1	1	7	0.337834	2.584963	chr20	33624662	33624719	LINE|L2|L2b	+	chr20	33619564	33636662	CBFA2T2|ENST00000491618.1	+	33619564,33623114,33623772,33624763,33628349,33629718,33636639	33619606,33623296,33623854,33625017,33628435,33629914,33636662	0.571429
transverse_colon_female_adult_53_years	chr5	168667698	168667721	168667709	+	RAMPAGE_only	5	7	20	0.965239	3.721612	chr5	168667660	168667779	SINE|MIR|MIRc	+	chr5	168706566	168720884	AC011365.1|ENST00000522615.1	+	168706566,168710054,168712284,168712679,168718068,168719938	168708647,168710200,168712380,168712771,168718185,168720884	0.500000
transverse_colon_female_adult_53_years	chr9	20658338	20658349	20658338	+	High_confidence	23	23	92	4.440098	5.240672	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658335	20770112	STRG.69687.6	+	20658335,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.826087
transverse_colon_female_adult_53_years	chr17	48096110	48096125	48096124	-	RAMPAGE_only	4	4	10	0.482619	2.947703	chr17	48095883	48096178	SINE|Alu|AluSx	-	chr17	48075088	48100582	CBX1|ENST00000444685.1	-	48075088,48076000,48076864,48095714,48100530	48075100,48076178,48077041,48095839,48100582	0.800000
transverse_colon_female_adult_53_years	chr16	29745246	29745292	29745246	+	High_confidence	9	9	32	1.544382	4.002910	chr16	29745050	29745346	SINE|Alu|AluJb	+	chr16	29745246	29748299	AC009133.3|ENST00000565600.1	+	29745246,29746782	29745385,29748299	0.656250
transverse_colon_female_adult_53_years	chr9	34368082	34368083	34368082	-	RAMPAGE_only	4	4	7	0.337834	2.584963	chr9	34367297	34368859	LTR|ERVL-MaLR|THE1B-int	-	chr9	34366669	34376853	MYORG|ENST00000297625.7	-	34366669,34376792	34373006,34376853	0.857143
transverse_colon_female_adult_53_years	chr19	11888463	11888486	11888485	+	High_confidence	3	5	11	0.530881	2.663533	chr19	11888459	11888685	LTR|ERV1|MER4D	-	chr19	11887854	11914329	STRG.114784.13	+	11887854,11903904,11904648	11903699,11903965,11914329	1.000000
transverse_colon_female_adult_53_years	chr7	127018995	127019002	127018995	-	RAMPAGE_only	3	3	10	0.482619	2.947703	chr7	127018509	127019019	LTR|ERVL-MaLR|MLT1J	+	chr7	126533050	127112320	GRM8|ENST00000480995.5	-	126533050,126609493,126701756,126769864,126902541,126903971,126904547,127105295,127106495,127112168	126533778,126609498,126701827,126770065,126902679,126904126,126904683,127105370,127106712,127112320	0.700000
transverse_colon_female_adult_53_years	chr17	2975621	2975661	2975621	+	RAMPAGE_only	5	6	34	1.640906	4.538910	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2957454	3020880	STRG.108170.5	+	2957454,2957758,2963429,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476	2957548,2957794,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020880	0.764706
transverse_colon_female_adult_53_years	chr10	5023230	5023307	5023239	-	High_confidence	68	69	254	12.258531	5.587441	chr10	5023105	5023345	LTR|ERVL-MaLR|MLT1F2	-	chr10	5004459	5023397	STRG.74524.9	-	5004459,5007406,5023058	5006592,5007506,5023397	0.629921
transverse_colon_female_adult_53_years	chr19	58306115	58306166	58306165	+	High_confidence	5	6	13	0.627405	2.931209	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58315202	STRG.117856.3	+	58305376,58306087,58314747	58305445,58312462,58315202	1.000000
transverse_colon_female_adult_53_years	chr6	28354137	28354206	28354205	-	High_confidence	57	60	212	10.231530	6.478288	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28352028	28354215	STRG.48401.6	-	28352028	28354215	0.801887
transverse_colon_female_adult_53_years	chr5	75611178	75611197	75611185	+	RAMPAGE_only	3	3	11	0.530881	3.321928	chr5	75610835	75611347	Retroposon|SVA|SVA_A	-	chr5	75618335	75671846	STRG.41383.1	+	75618335,75653141,75656028,75659282,75663393,75666791,75669251,75670978	75635882,75653240,75656127,75659381,75663489,75666993,75669383,75671846	0.545455
transverse_colon_female_adult_53_years	chr3	52482656	52482675	52482656	+	RAMPAGE_only	3	4	7	0.337834	2.584963	chr3	52482568	52482694	DNA|TcMar-Tc2|Kanga1c	+	chr3	52455616	52493071	STRG.25869.2	+	52455616,52457842,52458661,52470858,52471813,52472302,52473733,52476446,52477573,52478096,52478448,52479748,52480183,52480878,52485777,52487195,52489335,52490074,52490704,52491351,52491871	52455734,52457926,52458844,52470907,52471977,52472398,52473829,52476599,52477642,52478282,52478577,52479862,52480295,52484637,52485827,52488605,52489678,52490231,52490833,52491513,52493071	0.857143
transverse_colon_female_adult_53_years	chr11	114528084	114528129	114528128	-	RAMPAGE_only	7	8	25	1.206548	3.969002	chr11	114528125	114528623	LINE|L2|L2a	+	chr11	114521715	114530020	STRG.84086.24	-	114521715,114522878	114522503,114530020	0.920000
transverse_colon_female_adult_53_years	chr2	229232040	229232054	229232040	-	High_confidence	2	2	9	0.434357	2.750000	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.777778
transverse_colon_female_adult_53_years	chr1	156252925	156252931	156252930	-	High_confidence	3	3	9	0.434357	3.000000	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.666667
transverse_colon_female_adult_53_years	chr2	233691701	233691710	233691709	+	RAMPAGE_only	4	5	9	0.434357	2.750000	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233682367	233692347	UGT1A7|ENST00000485022.1	+	233682367,233689898,233690519	233682792,233689904,233692347	0.666667
transverse_colon_female_adult_53_years	chr1	110041824	110041843	110041824	+	High_confidence	3	4	8	0.386095	2.807355	chr1	110041871	110041959	LINE|L1|L1ME4b	+	chr1	110041170	110074641	STRIP1|ENST00000473429.5	+	110041170,110043087,110043638,110044839,110045014,110046679,110047541,110047771,110049111,110050955,110051682,110053664,110072454,110074126	110041861,110043270,110043856,110044905,110045078,110046751,110047616,110047869,110050409,110051060,110051887,110054802,110072596,110074641	0.750000
transverse_colon_female_adult_53_years	chr6	122846240	122846282	122846243	-	High_confidence	40	65	165	7.963219	4.752534	chr6	122845972	122846407	LINE|L1|L1MEc	-	chr6	122844404	122846231	STRG.52676.2	-	122844404	122846231	0.933333
transverse_colon_female_adult_53_years	chr9	27009124	27009157	27009156	+	RAMPAGE_only	3	4	8	0.386095	2.750000	chr9	27009197	27009327	DNA|hAT-Charlie|MER5A1	+	chr9	27002214	27048272	STRG.70016.5	+	27002214,27009019,27011905,27016906,27018646,27029024,27044741,27047273,27048147	27004005,27009158,27011968,27017050,27018687,27029104,27044795,27047371,27048272	1.000000
transverse_colon_female_adult_53_years	chr1	31471452	31471480	31471478	-	High_confidence	9	16	26	1.254810	4.373661	chr1	31471367	31471933	LTR|ERV1|LTR10A	-	chr1	31469685	31471474	STRG.1381.1	-	31469685	31471474	0.884615
transverse_colon_female_adult_53_years	chr4	174154657	174154663	174154657	-	RAMPAGE_only	3	3	7	0.337834	2.521641	chr4	174154622	174154667	SINE|tRNA-Deu|AmnSINE2	+	chr4	174097754	174120517	LINC02268|ENST00000503140.1	-	174097754,174114040,174119896,174120418	174097829,174114272,174120086,174120517	0.857143
transverse_colon_female_adult_53_years	chr17	42980286	42980345	42980330	-	High_confidence	4	5	23	1.110024	4.368523	chr17	42980326	42980440	LINE|L2|L2a	+	chr17	42968725	42980349	PTGES3L|ENST00000462157.5	-	42968725,42970288,42971606,42979169,42979377	42969186,42970342,42971696,42979268,42980349	0.869565
transverse_colon_female_adult_53_years	chr19	50249795	50249812	50249811	+	RAMPAGE_only	8	10	25	1.206548	3.934561	chr19	50249856	50250043	SINE|MIR|MIR	+	chr19	50210365	50309790	MYH14|ENST00000596571.5	+	50210365,50217614,50223082,50223246,50225584,50226902,50230524,50231929,50244241,50247003,50248986,50249649,50250514,50252638,50257298,50259143,50260645,50261474,50263311,50266876,50268160,50271408,50271848,50272559,50275990,50276756,50278082,50280036,50280230,50281593,50286481,50289435,50290886,50292260,50293232,50293563,50301660,50307048,50309004,50309639	50210770,50217771,50223110,50223349,50225677,50226966,50230623,50232070,50244337,50247122,50249139,50249823,50250688,50252753,50257486,50259265,50260715,50261635,50263420,50267008,50268367,50271546,50271972,50272731,50276203,50276901,50278289,50280141,50280383,50281842,50286694,50289648,50291048,50292389,50293321,50293687,50301869,50307157,50309177,50309790	0.960000
transverse_colon_female_adult_53_years	chr4	1881905	1881940	1881928	+	RAMPAGE_only	6	6	17	0.820453	3.625000	chr4	1881812	1881991	LINE|L2|L2b	-	chr4	1887500	1901251	NSD2|ENST00000515806.1	+	1887500,1900625	1887690,1901251	0.529412
transverse_colon_female_adult_53_years	chr20	37345083	37345131	37345126	+	High_confidence	30	31	113	5.453598	5.846665	chr20	37345047	37345146	SINE|MIR|MIR3	+	chr20	37344686	37405432	STRG.119767.2	+	37344686,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.628319
transverse_colon_female_adult_53_years	chr1	203429182	203429251	203429250	-	High_confidence	271	278	650	31.370257	7.410090	chr1	203429152	203429582	LTR|ERVK|LTR22A	-	chr1	203421368	203429279	STRG.10086.1	-	203421368	203429279	0.966154
transverse_colon_female_adult_53_years	chr8	47360804	47360848	47360804	+	High_confidence	12	12	30	1.447858	4.351823	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47440397	SPIDR|ENST00000521918.6	+	47360818,47396375,47407860,47440322	47360949,47396626,47407961,47440397	0.566667
transverse_colon_female_adult_53_years	chr11	64807583	64807613	64807583	-	RAMPAGE_only	2	2	8	0.386095	2.750000	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64804374	64806368	MEN1|ENST00000478548.1	-	64804374,64805033,64805634	64804816,64805198,64806368	0.750000
transverse_colon_female_adult_53_years	chr17	66553614	66553668	66553667	+	RAMPAGE_only	3	3	11	0.530881	3.027169	chr17	66553431	66553756	LTR|ERVL-MaLR|MLT1F1	+	chr17	66302859	66775127	PRKCA|ENST00000284384.6	+	66302859,66306095,66496200,66554518,66641354,66645382,66687110,66688301,66688950,66732687,66735488,66738763,66741658,66742621,66773986	66303024,66306127,66496283,66554579,66641466,66645511,66687267,66688436,66689047,66732825,66735662,66738855,66741721,66742760,66775127	0.727273
transverse_colon_female_adult_53_years	chr15	75347012	75347053	75347042	+	High_confidence	16	16	80	3.860955	5.709184	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347089	75355245	NEIL1|ENST00000561643.5	+	75347089,75347202,75348883,75352110,75352323,75352601,75354652,75354963	75347110,75347473,75349339,75352230,75352387,75354492,75354818,75355245	0.925000
transverse_colon_female_adult_53_years	chr11	65434368	65434945	65434710	+	RAMPAGE_only	19	20	784	37.837356	7.387388	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65423637	65445540	STRG.81845.2	+	65423637,65426060,65439492	65425737,65439402,65445540	0.997449
transverse_colon_female_adult_53_years	chr11	57793698	57793744	57793743	+	RAMPAGE_only	8	8	38	1.833953	4.662015	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57781602	57796584	CTNND1|ENST00000530068.5	+	57781602,57791491,57794009,57795576,57796456	57781646,57791673,57794081,57795729,57796584	0.657895
transverse_colon_female_adult_53_years	chr2	156455616	156455686	156455622	+	RAMPAGE_only	9	11	42	2.027001	4.681687	chr2	156455639	156455884	LINE|L2|L2c	+	chr2	156473571	156583228	GPD2|ENST00000409125.8	+	156473571,156476097,156496043,156501784,156510796,156512219,156513332,156549607,156550601,156557388,156568824,156569362,156570086,156571133,156578888,156579085,156579689,156582792	156473636,156476207,156496215,156501879,156510920,156512317,156513496,156549772,156550746,156557582,156568959,156569538,156570218,156571292,156579001,156579164,156579788,156583228	0.500000
transverse_colon_female_adult_53_years	chr11	114648221	114648331	114648258	-	RAMPAGE_only	8	8	81	3.909217	5.592574	chr11	114648239	114648618	LTR|ERVL|MLT2B4	-	chr11	114640385	114651608	STRG.84086.22	-	114640385,114651162,114651418	114648345,114651317,114651608	0.950617
transverse_colon_female_adult_53_years	chr7	99210280	99210295	99210294	-	High_confidence	4	5	9	0.434357	2.750000	chr7	99210034	99210321	LINE|L2|L2b	+	chr7	99210056	99210455	STRG.60271.1	-	99210056	99210455	0.666667
transverse_colon_female_adult_53_years	chr16	72677738	72677740	72677739	-	RAMPAGE_only	18	24	32	1.544382	4.515320	chr16	72677587	72677820	LINE|L1|L1MB4	+	chr16	72283300	72665009	LINC01572|NR_126330.1	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72665009	0.500000
transverse_colon_female_adult_53_years	chr1	174874418	174874454	174874418	+	RAMPAGE_only	35	39	164	7.914957	6.407996	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174877439	174995301	RABGAP1L|ENST00000392064.6	+	174877439,174957456,174969276,174976077,174978806,174982833,174988640,174989848	174877605,174957549,174969387,174976182,174978890,174982905,174988838,174995301	0.500000
transverse_colon_female_adult_53_years	chr7	117489252	117489254	117489252	+	RAMPAGE_only	4	7	8	0.386095	2.521641	chr7	117489145	117489456	DNA|TcMar-Tc2|Kanga11a	+	chr7	117480094	117667108	CFTR|ENST00000649781.1	+	117480094,117504252,117509033,117530898,117534275,117535247,117536547,117540099,117542015,117559463,117587738,117590352,117591933,117594929,117602825,117603531,117606673,117610518,117611580,117614612,117627521,117642437,117652841,117664687,117665458,117666907	117480147,117504363,117509142,117531114,117534365,117535411,117536673,117540346,117542108,117559655,117587833,117590439,117592657,117595058,117602863,117603782,117606753,117610669,117611808,117614713,117627770,117642593,117652931,117664860,117665564,117667108	0.625000
transverse_colon_female_adult_53_years	chr6	11728598	11728658	11728598	-	High_confidence	2	2	15	0.723929	3.773557	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.800000
transverse_colon_female_adult_53_years	chr9	98807288	98807297	98807293	-	High_confidence	2	3	9	0.434357	2.750000	chr9	98807264	98807412	SINE|MIR|MIRc	+	chr9	98798465	98807564	AL807776.1|ENST00000647710.1	-	98798465,98806770	98799609,98807564	0.666667
transverse_colon_female_adult_53_years	chrX	114059284	114059307	114059288	-	High_confidence	177	191	396	19.111726	6.792946	chrX	114059021	114059467	LTR|ERV1|LTR2	-	chrX	113961710	114059289	XACT|ENST00000649506.1	-	113961710,114042367,114059003	113963599,114042484,114059289	0.787879
transverse_colon_female_adult_53_years	chr11	57785792	57785812	57785811	+	RAMPAGE_only	4	4	9	0.434357	2.500000	chr11	57785570	57785846	SINE|Alu|AluSg	-	chr11	57761800	57808535	STRG.81264.34	+	57761800,57795576,57796456,57801732,57803620,57804662,57805881,57806914,57808164,57808389	57794081,57795729,57796992,57802196,57803804,57804780,57806035,57806983,57808292,57808535	0.888889
transverse_colon_female_adult_53_years	chr17	47067498	47067534	47067498	-	High_confidence	141	154	693	33.445520	6.188522	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.923521
transverse_colon_female_adult_53_years	chr1	151369245	151369264	151369245	-	High_confidence	2	4	9	0.434357	2.725481	chr1	151369225	151369333	DNA|hAT-Tip100|MER91A	-	chr1	151365572	151369841	SELENBP1|ENST00000424475.5	-	151365572,151365767,151366274,151366721,151368198,151369441,151369712	151365684,151365846,151366453,151366904,151368319,151369554,151369841	0.777778
transverse_colon_female_adult_53_years	chr13	46374832	46374833	46374832	-	RAMPAGE_only	43	44	59	2.847454	5.398594	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46371940	46378645	RUBCNL|ENST00000439642.1	-	46371940,46377889,46378446	46372597,46378005,46378645	0.728814
transverse_colon_female_adult_53_years	chr12	4720066	4720068	4720066	-	High_confidence	3	6	8	0.386095	2.521641	chr12	4720007	4720593	LTR|ERVK|LTR14C	-	chr12	4700416	4720102	LOC101929549|NR_110112.1	-	4700416,4703312,4704177,4719864	4701179,4703440,4704297,4720102	0.625000
transverse_colon_female_adult_53_years	chr15	29760051	29760079	29760051	-	RAMPAGE_only	2	2	7	0.337834	2.521641	chr15	29759330	29760109	LINE|L1|L1MA9	-	chr15	29758902	29822502	TJP1|ENST00000495972.6	-	29758902,29761138,29761600,29762334,29766265,29772063,29773232,29800645,29822001	29760308,29761286,29761769,29762438,29766542,29772166,29773357,29800702,29822502	0.571429
transverse_colon_female_adult_53_years	chr10	96768264	96768266	96768264	-	RAMPAGE_only	6	12	16	0.772191	3.500000	chr10	96767924	96768442	DNA|hAT-Charlie|MER1A	-	chr10	96593311	96720522	PIK3AP1|NM_152309.2	-	96593311,96602279,96603978,96609711,96616638,96620351,96623471,96626707,96628397,96645472,96648658,96651247,96651508,96652697,96656797,96709566,96720381	96595634,96602398,96604049,96609867,96616711,96620557,96623537,96626905,96628493,96645662,96648855,96651380,96651651,96652842,96656934,96709983,96720522	0.500000
transverse_colon_female_adult_53_years	chr4	1241430	1241458	1241430	-	High_confidence	2	2	8	0.386095	2.521641	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1235752	1241463	CTBP1|ENST00000515690.1	-	1235752,1238182,1241324	1236316,1238337,1241463	0.500000
transverse_colon_female_adult_53_years	chr11	114650425	114650426	114650425	+	High_confidence	18	20	25	1.206548	4.373661	chr11	114650014	114651054	LINE|L1|L1MCc	+	chr11	114650403	114715651	STRG.84100.1	+	114650403,114651241,114679656,114698044,114703990,114705780,114706394	114651045,114651425,114679762,114698778,114704052,114705996,114715651	1.000000
transverse_colon_female_adult_53_years	chr11	65382641	65382646	65382645	-	High_confidence	6	6	11	0.530881	2.921928	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.909091
transverse_colon_female_adult_53_years	chr17	8062615	8062633	8062629	+	High_confidence	72	72	217	10.472840	6.292502	chr17	8062291	8063901	LTR|ERVK|HERVK-int	+	chr17	8062633	8063905	STRG.108448.1	+	8062633	8063905	0.972350
transverse_colon_female_adult_53_years	chr8	65979196	65979197	65979196	+	RAMPAGE_only	12	12	14	0.675667	3.700440	chr8	65979005	65979377	LTR|ERVL-MaLR|THE1B	+	chr8	66021555	66100520	DNAJC5B|NM_033105.4	+	66021555,66043487,66051530,66076659,66080376,66099936	66021705,66043611,66051666,66076873,66080548,66100520	0.785714
transverse_colon_female_adult_53_years	chr7	40142296	40142308	40142307	+	RAMPAGE_only	6	6	16	0.772191	3.640224	chr7	40141752	40142344	LTR|ERV1|LTR10F	-	chr7	40135015	40195060	SUGCT|ENST00000413931.5	+	40135015,40141823,40180946,40181954,40188494,40189543,40194939	40135120,40141873,40180998,40182028,40188580,40189594,40195060	0.875000
transverse_colon_female_adult_53_years	chr6	36757385	36757400	36757399	-	High_confidence	27	28	73	3.523121	5.543266	chr6	36757386	36757542	SINE|MIR|MIRc	-	chr6	36754232	36757400	CPNE5|ENST00000634222.1	-	36754232,36757284	36756298,36757400	0.589041
transverse_colon_female_adult_53_years	chrX	118419227	118419276	118419227	+	RAMPAGE_only	2	2	21	1.013501	3.630413	chrX	118415803	118419707	LINE|L1|L1PB1	-	chrX	118392747	118449336	WDR44|ENST00000371848.3	+	118392747,118394054,118395248,118396969,118398386,118404337,118406874,118409488,118410894,118432780,118436701,118441367,118442243,118442564,118443559,118444359,118447059,118448892	118393271,118394185,118395344,118397106,118398470,118404444,118407026,118409627,118410959,118432894,118436824,118441559,118442345,118442680,118443687,118444494,118447114,118449336	0.761905
transverse_colon_female_adult_53_years	chr1	120609356	120609364	120609363	-	RAMPAGE_only	12	12	19	0.916977	3.905765	chr1	120609331	120609453	SINE|MIR|MIR3	+	chr1	120489859	120701289	AC241952.1|ENST00000612480.2	-	120489859,120491581,120491934,120493157,120494233,120495029,120497181,120501109,120501927,120503599,120504381,120505710,120509484,120511665,120512469,120513765,120514824,120516823,120518529,120519217,120520233,120523893,120530295,120536310,120538322,120538570,120541891,120543005,120543946,120544266,120545280,120548288,120548640,120548972,120550144,120573071,120578705,120579070,120620354,120641607,120646872,120701056	120489916,120491628,120492073,120493301,120494460,120495146,120497421,120501234,120502117,120503719,120504513,120505962,120509670,120511818,120512693,120513817,120515060,120517352,120518649,120519410,120520669,120524126,120530384,120536402,120538404,120538735,120542078,120543196,120544084,120544380,120545439,120548501,120548733,120549092,120550276,120573189,120578881,120579194,120620465,120641759,120646928,120701289	0.736842
transverse_colon_female_adult_53_years	chrX	73825034	73825085	73825034	-	RAMPAGE_only	9	9	29	1.399596	4.384517	chrX	73825002	73825055	SINE|MIR|MIRc	-	chrX	73823336	73829691	XIST|ENST00000649757.1	-	73823336,73829067	73827984,73829691	0.931034
transverse_colon_female_adult_53_years	chr6	158572514	158572548	158572536	+	RAMPAGE_only	3	3	16	0.772191	3.506891	chr6	158572502	158572647	DNA|hAT-Charlie|MER58B	+	chr6	158560105	158635428	STRG.54430.3	+	158560105,158573419,158580939,158583953,158585303,158589671,158605266,158607243,158608332,158608658,158623549,158625103,158625702,158628407,158629729,158631322,158631809	158560232,158573523,158580995,158584044,158585425,158589782,158605347,158607343,158608463,158608750,158623607,158625206,158625754,158628490,158629819,158631389,158635428	0.750000
transverse_colon_female_adult_53_years	chr11	65439297	65439523	65439360	+	RAMPAGE_only	9	9	132	6.370575	5.476346	chr11	65439400	65439684	SINE|Alu|AluSz6	+	chr11	65423637	65445540	STRG.81845.2	+	65423637,65426060,65439492	65425737,65439402,65445540	0.969697
transverse_colon_female_adult_53_years	chr12	127060497	127060505	127060497	+	High_confidence	68	70	166	8.011481	6.273774	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060475	127146926	STRG.91144.1	+	127060475,127119553,127145711	127061334,127119678,127146926	1.000000
transverse_colon_female_adult_53_years	chr10	110881140	110881171	110881148	+	High_confidence	10	12	48	2.316573	4.669196	chr10	110881075	110881155	DNA|TcMar-Mariner|MADE2	+	chr10	110880318	110887798	PDCD4|ENST00000492932.5	+	110880318,110881232,110883002,110885252,110887664	110880485,110881535,110883097,110885366,110887798	0.770833
transverse_colon_female_adult_53_years	chr3	58136031	58136155	58136154	+	RAMPAGE_only	20	20	139	6.708409	5.906289	chr3	58136192	58136456	SINE|MIR|MIRb	+	chr3	58132077	58148364	STRG.26476.6	+	58132077,58134615,58135978,58138281,58141857,58142576,58143472,58145920,58146819,58148205	58132931,58134772,58136168,58138529,58142399,58142752,58143613,58146049,58146993,58148364	0.949640
transverse_colon_female_adult_53_years	chr19	572249	572261	572260	-	High_confidence	4	4	9	0.434357	2.641604	chr19	572109	572238	SINE|Alu|AluJo	-	chr19	567432	572228	AC009005.1|ENST00000588290.3	-	567432,571439,572108	567624,571596,572228	0.777778
transverse_colon_female_adult_53_years	chr12	20423680	20423835	20423718	+	RAMPAGE_only	19	19	118	5.694908	5.775616	chr12	20423744	20423796	LTR|Gypsy|LTR81	+	chr12	20392569	20509770	STRG.86262.4	+	20392569,20395554	20395496,20509770	0.906780
transverse_colon_female_adult_53_years	chr9	74822487	74822492	74822487	-	High_confidence	1068	1157	1910	92.180293	7.529743	chr9	74822251	74822549	SINE|Alu|AluJb	-	chr9	74723934	74822485	STRG.71462.9	-	74723934,74728238,74732684,74735743,74739366,74739722,74742560,74744094,74747888,74750663,74752276,74755352,74761695,74761998,74771702,74775882,74782361,74782678,74785873,74788613,74792623,74796740,74800253,74801897,74803793,74812298,74816668,74816891,74820303,74821668,74822341	74724746,74728345,74735484,74738612,74739449,74740009,74742626,74744891,74747914,74750722,74752368,74755798,74761808,74763134,74771835,74776076,74782476,74782853,74786125,74788742,74792770,74796893,74800482,74802175,74810868,74812433,74816769,74816964,74820427,74821837,74822485	0.848691
transverse_colon_female_adult_53_years	chr14	101823645	101823653	101823652	+	High_confidence	28	28	48	2.316573	4.602436	chr14	101823598	101823757	SINE|MIR|MIRc	-	chr14	101824161	101824478	PPP2R5C|ENST00000607042.1	+	101824161	101824478	0.541667
transverse_colon_female_adult_53_years	chr3	127711308	127711364	127711337	-	RAMPAGE_only	4	5	17	0.820453	3.500000	chr3	127711197	127711374	SINE|MIR|MIRb	+	chr3	127692111	127714146	MGLL|ENST00000476682.1	-	127692111,127694974,127710575	127692323,127695190,127714146	0.941176
transverse_colon_female_adult_53_years	chr19	7456360	7456403	7456402	+	RAMPAGE_only	5	6	13	0.627405	3.238901	chr19	7456434	7456770	SINE|Alu|AluSz	+	chr19	7449249	7472477	STRG.114611.5	+	7449249,7453466,7456326,7458511,7459902,7462151,7463817,7464559,7466917,7467070,7468824,7469903,7470125	7451266,7453715,7456403,7458690,7459994,7462334,7463955,7464690,7466974,7467684,7469131,7470029,7472477	1.000000
transverse_colon_female_adult_53_years	chr11	85774892	85774906	85774892	-	RAMPAGE_only	2	2	8	0.386095	2.521641	chr11	85774848	85774995	SINE|MIR|MIR3	+	chr11	85694220	85758069	SYTL2|NM_001162951.2	-	85694220,85696182,85697978,85700514,85704857,85707428,85709330,85711112,85714412,85718789,85720857,85727895,85733938,85736500,85737574,85745636,85748271,85757624	85695340,85696388,85698078,85700593,85705028,85707531,85709500,85711232,85714507,85718843,85720959,85727967,85734742,85736612,85737656,85745772,85748423,85758069	0.500000
transverse_colon_female_adult_53_years	chr19	15829094	15829095	15829094	+	High_confidence	11	13	13	0.627405	3.546594	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	0.692308
transverse_colon_female_adult_53_years	chr5	75336426	75336455	75336426	+	High_confidence	2	2	8	0.386095	3.000000	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.875000
transverse_colon_female_adult_53_years	chr14	103848775	103848814	103848813	-	RAMPAGE_only	4	5	17	0.820453	3.577820	chr14	103848808	103849048	SINE|MIR|MIRb	+	chr14	103733750	103847590	PPP1R13B|NM_015316.2	-	103733750,103736002,103737693,103738678,103738885,103739823,103741789,103742653,103746372,103749793,103752999,103754069,103757649,103778744,103784794,103797370,103847298	103735195,103736202,103737860,103738812,103739023,103740593,103742291,103742823,103746553,103749934,103753196,103754244,103757751,103778821,103784914,103797518,103847590	0.529412
transverse_colon_female_adult_53_years	chr1	159976774	159976789	159976774	+	RAMPAGE_only	4	5	11	0.530881	2.732159	chr1	159976818	159976895	SINE|Alu|FLAM_A	+	chr1	159961233	159989451	STRG.7567.3	+	159961233,159965498,159976643	159961405,159965645,159989451	0.818182
transverse_colon_female_adult_53_years	chr20	45833293	45833313	45833305	-	High_confidence	7	7	25	1.206548	4.053509	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.960000
transverse_colon_female_adult_53_years	chr1	30039392	30039418	30039417	-	RAMPAGE_only	3	4	10	0.482619	3.169925	chr1	30039248	30039696	LTR|ERVK|LTR22A	-	chr1	30013951	30037612	LINC01648|ENST00000445180.2	-	30013951,30015243,30016719,30025024,30029289,30036771,30037497	30014509,30015295,30016921,30025183,30029490,30037003,30037612	0.700000
transverse_colon_female_adult_53_years	chr15	57300338	57300344	57300338	+	High_confidence	28	28	68	3.281811	5.450656	chr15	57300291	57300572	SINE|Alu|AluSg	-	chr15	57300364	57307761	STRG.101293.2	+	57300364,57307541	57307068,57307761	0.955882
transverse_colon_female_adult_53_years	chr21	28048446	28048447	28048446	+	High_confidence	28	28	34	1.640906	3.632049	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.911765
transverse_colon_female_adult_53_years	chr12	50924078	50924079	50924078	+	High_confidence	5	8	8	0.386095	2.750000	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	1.000000
transverse_colon_female_adult_53_years	chr10	110881044	110881105	110881044	+	High_confidence	6	7	22	1.061763	3.880180	chr10	110881075	110881155	DNA|TcMar-Mariner|MADE2	+	chr10	110880318	110887798	PDCD4|ENST00000492932.5	+	110880318,110881232,110883002,110885252,110887664	110880485,110881535,110883097,110885366,110887798	0.636364
transverse_colon_female_adult_53_years	chr5	116554807	116554811	116554810	-	High_confidence	3	3	7	0.337834	2.584963	chr5	116554799	116555125	SINE|tRNA|LFSINE_Vert	-	chr5	116496250	116554896	SEMA6A|ENST00000509665.1	-	116496250,116497326,116502209,116504844,116554738	116496313,116497387,116502327,116504982,116554896	0.571429
transverse_colon_female_adult_53_years	chrX	44225802	44225827	44225802	-	High_confidence	51	51	124	5.984480	4.847225	chrX	44225702	44225811	SINE|MIR|MIR3	-	chrX	44147881	44225756	EFHC2|ENST00000343571.3	-	44147881,44163921,44176291,44178366,44225684	44148896,44164027,44176384,44178564,44225756	0.975806
transverse_colon_female_adult_53_years	chr11	68180141	68180142	68180141	-	High_confidence	4	4	7	0.337834	2.584963	chr11	68180123	68180214	SINE|MIR|MIRc	+	chr11	68171118	68180165	KMT5B|ENST00000323599.10	-	68171118,68171231,68171542,68173803,68174087,68175017,68180131	68171151,68171251,68171709,68173913,68174210,68175183,68180165	0.857143
transverse_colon_female_adult_53_years	chr9	74848002	74848006	74848002	-	RAMPAGE_only	6	6	13	0.627405	3.418296	chr9	74847872	74848586	DNA|TcMar-Tigger|MER44C	-	chr9	74723934	74849250	STRG.71462.8	-	74723934,74728238,74732684,74738406,74739366,74739722,74742560,74747888,74752276,74755352,74761695,74761998,74771702,74775882,74782361,74782678,74785873,74792623,74796740,74800253,74801897,74812298,74816668,74816891,74820303,74821668,74827777,74833997,74840023,74842165,74847889	74724746,74728345,74732736,74738612,74739449,74740009,74744145,74750722,74752368,74755473,74761808,74763134,74771835,74776076,74782476,74782853,74786125,74792770,74796893,74800482,74810868,74812433,74816769,74816964,74820427,74821837,74827949,74834122,74840237,74842343,74849250	0.923077
transverse_colon_female_adult_53_years	chr3	136625270	136625271	136625270	-	RAMPAGE_only	1630	1653	1783	86.051027	6.851729	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136368602	136629281	STRG.29825.3	-	136368602,136377659,136398748,136417884,136421092,136422409,136422767,136422951,136433555,136443286,136452032,136464880,136472412,136473538,136477288,136500222,136502627,136542118,136568764,136604308,136623145,136625204	136369282,136377752,136398829,136417972,136421163,136422613,136422857,136423044,136433659,136443404,136452147,136464988,136472492,136473637,136477412,136500296,136521417,136542195,136568861,136604473,136623248,136629281	0.916994
transverse_colon_female_adult_53_years	chr2	102619895	102619947	102619895	+	High_confidence	2	2	14	0.675667	3.235926	chr2	102619869	102619940	LINE|L1|L1MD2	-	chr2	102619706	102711318	SLC9A2|ENST00000233969.2	+	102619706,102657563,102665099,102683260,102684133,102694413,102695042,102701069,102702405,102704543,102705845,102708118	102620137,102658027,102665350,102683478,102684336,102694503,102695113,102701231,102702502,102704675,102705936,102711318	0.642857
transverse_colon_female_adult_53_years	chr4	42428685	42428714	42428713	-	RAMPAGE_only	5	6	17	0.820453	3.500000	chr4	42428198	42428856	LINE|L2|L2a	+	chr4	42408376	42465075	STRG.34137.4	-	42408376,42414626,42422806,42423616,42444577,42446582,42451980,42455296,42455524,42464689,42464892	42413013,42414718,42422899,42443672,42444634,42446644,42452059,42455419,42455599,42464800,42465075	0.941176
transverse_colon_female_adult_53_years	chr2	233012616	233012638	233012637	+	High_confidence	8	9	41	1.978739	3.420930	chr2	233012609	233012781	DNA|hAT-Tip100|MER45A	+	chr2	233012613	233015885	AC106876.1|ENST00000409905.1	+	233012613,233013139,233015706	233012969,233013247,233015885	0.902439
transverse_colon_female_adult_53_years	chr7	46969661	46969669	46969661	+	High_confidence	6	6	12	0.579143	3.095795	chr7	46969489	46969705	LINE|L2|L2c	-	chr7	46969701	46983429	AC004870.2|ENST00000445615.5	+	46969701,46972276,46982212,46983010	46969913,46972385,46982303,46983429	0.666667
transverse_colon_female_adult_53_years	chr10	32381292	32381296	32381292	-	RAMPAGE_only	10	11	20	0.965239	3.108376	chr10	32380981	32381420	DNA|TcMar-Tigger|Tigger2	-	chr10	32267715	32378798	EPC1|NM_001282391.1	-	32267715,32271553,32272025,32273162,32284697,32286693,32286925,32287097,32291162,32292495,32292987,32293591,32305771,32378490	32269135,32271917,32272167,32273281,32285050,32286842,32287015,32287274,32291322,32292644,32293194,32293737,32305931,32378798	0.700000
transverse_colon_female_adult_53_years	chr1	153967486	153967512	153967486	+	High_confidence	11	11	29	1.399596	3.780395	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.827586
transverse_colon_female_adult_53_years	chr4	83089244	83089525	83089524	-	RAMPAGE_only	15	17	202	9.748911	6.120034	chr4	83089487	83089519	LINE|L2|L2a	-	chr4	83079734	83114715	STRG.35435.4	-	83079734,83094677,83104895,83107803	83090971,83094791,83105020,83114715	0.995050
transverse_colon_female_adult_53_years	chr1	21227192	21227204	21227192	-	RAMPAGE_only	3	3	8	0.386095	2.521641	chr1	21227023	21227146	SINE|Alu|AluJr4	-	chr1	21218583	21279549	ECE1|ENST00000357071.8	-	21218583,21221746,21225249,21227158,21227930,21233557,21235849,21236745,21238133,21244988,21247220,21255946,21257524,21258692,21260270,21272698,21279190	21220131,21221842,21225440,21227226,21228041,21233661,21235927,21236844,21238244,21245103,21247363,21256138,21257590,21258839,21260392,21272911,21279549	0.625000
transverse_colon_female_adult_53_years	chr15	45645874	45645925	45645895	+	High_confidence	18	20	97	4.681408	5.499657	chr15	45645871	45646155	DNA|hAT-Tip100|Arthur1C	+	chr15	45645880	45669946	SQOR|ENST00000561493.5	+	45645880,45658906,45661954,45669927	45646008,45659157,45662125,45669946	0.701031
transverse_colon_female_adult_53_years	chr18	54945425	54945461	54945425	-	RAMPAGE_only	3	3	15	0.723929	2.866248	chr18	54945305	54945474	SINE|MIR|MIRc	-	chr18	54901510	54942950	CCDC68|ENST00000432185.5	-	54901510,54907785,54917912,54919270,54928799,54934819,54936832,54937956,54940996,54942674	54904415,54907862,54917996,54919376,54928882,54934948,54936958,54938097,54941083,54942950	1.000000
transverse_colon_female_adult_53_years	chr1	27155470	27155491	27155475	-	High_confidence	7	7	23	1.110024	3.697846	chr1	27155432	27155584	SINE|MIR|MIR	+	chr1	27098808	27155130	SLC9A1|NM_003047.4	-	27098808,27101202,27101724,27102015,27102384,27102672,27103222,27105884,27107647,27109526,27113825,27153982	27100644,27101275,27101826,27102130,27102558,27102743,27103312,27106087,27107865,27109777,27114286,27155130	0.956522
transverse_colon_female_adult_53_years	chr7	45940646	45940660	45940646	+	RAMPAGE_only	3	3	15	0.723929	2.835238	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45969656	45980191	AC073115.2|ENST00000416708.1	+	45969656,45978349,45979908	45969809,45978468,45980191	0.666667
transverse_colon_female_adult_53_years	chr4	149901222	149901249	149901245	-	High_confidence	51	59	183	8.831934	6.651715	chr4	149901183	149901298	SINE|MIR|MIRb	+	chr4	149898963	149901382	STRG.38348.8	-	149898963	149901382	0.601093
transverse_colon_female_adult_53_years	chr7	6991286	6991287	6991286	+	RAMPAGE_only	5	5	7	0.337834	2.521641	chr7	6989229	6992060	LTR|ERV1|HERVS71-int	-	chr7	7094264	7106396	STRG.55332.1	+	7094264,7097989,7103122	7095131,7098118,7106396	0.571429
transverse_colon_female_adult_53_years	chr1	179877329	179877348	179877347	-	High_confidence	4	4	11	0.530881	3.277613	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179843930	179877790	STRG.9063.2	-	179843930,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877790	0.636364
transverse_colon_female_adult_53_years	chr21	39642389	39642396	39642395	+	RAMPAGE_only	13	13	29	1.399596	3.838040	chr21	39642371	39642477	LINE|L2|L2b	-	chr21	39645195	39662888	STRG.122215.5	+	39645195,39659752	39646622,39662888	0.793103
transverse_colon_female_adult_53_years	chr19	18109059	18109094	18109093	+	High_confidence	12	12	19	0.916977	3.947703	chr19	18108852	18109256	LINE|L2|L2b	-	chr19	18109124	18147701	STRG.115539.1	+	18109124,18121684,18121852,18122672,18123216,18123579,18123938,18124264,18124641,18128399,18128865,18130493,18131908,18134578,18134816,18135739,18137238,18139014,18141881,18143762,18144465,18145002,18145742,18146880,18147442	18109651,18121773,18121922,18122751,18123374,18123655,18124148,18124366,18124774,18128458,18128951,18130702,18132047,18134711,18134982,18135841,18137361,18139124,18142015,18144007,18144693,18145229,18145865,18147017,18147701	0.894737
transverse_colon_female_adult_53_years	chr4	2037119	2037126	2037119	+	High_confidence	5	5	16	0.772191	3.640224	chr4	2036935	2037276	LTR|ERVL-MaLR|MSTA	+	chr4	2037127	2043964	STRG.32077.4	+	2037127,2039996,2042326,2042735,2043860	2037183,2042068,2042484,2042824,2043964	0.937500
transverse_colon_female_adult_53_years	chr2	113704173	113704174	113704173	-	High_confidence	89	89	89	4.295312	5.952932	chr2	113703868	113704969	LTR|ERV1|LTR12E	-	chr2	113677701	113704078	AC017074.1|ENST00000424612.1	-	113677701,113688160,113703696	113677783,113688257,113704078	0.696629
transverse_colon_female_adult_53_years	chr11	65430105	65430816	65430580	+	RAMPAGE_only	68	92	1179	56.900819	6.806858	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65423637	65445540	STRG.81845.2	+	65423637,65426060,65439492	65425737,65439402,65445540	0.999152
transverse_colon_female_adult_53_years	chr10	122018672	122018686	122018672	+	RAMPAGE_only	7	12	22	1.061763	4.061482	chr10	122018391	122018791	LINE|L1|L1MB5	-	chr10	122019747	122226480	STRG.78665.2	+	122019747,122021936,122050437,122082646,122088477,122132608,122195039,122210396,122215390,122216626,122224725,122226365	122019881,122022014,122050550,122087959,122088591,122132734,122195176,122211708,122215451,122216828,122224787,122226480	0.772727
transverse_colon_female_adult_53_years	chr11	64242485	64242549	64242548	+	High_confidence	5	8	38	1.833953	4.807009	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.947368
transverse_colon_female_adult_53_years	chr12	50924037	50924051	50924037	+	High_confidence	2	2	6	0.289572	2.584963	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50924004	50929955	METTL7A|ENST00000550502.1	+	50924004,50925036,50929913	50924080,50925536,50929955	0.500000
transverse_colon_female_adult_53_years	chr11	108224074	108224075	108224074	+	High_confidence	16	16	22	1.061763	3.203702	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.636364
transverse_colon_female_adult_53_years	chr8	27977120	27977126	27977125	-	High_confidence	112	128	174	8.397576	6.215625	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27870235	27977115	STRG.64155.3	-	27870235,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977115	0.798851
transverse_colon_female_adult_53_years	chr6	2968831	2968849	2968831	-	RAMPAGE_only	3	3	9	0.434357	3.000000	chr6	2968783	2968841	LINE|L1|HAL1	-	chr6	2948162	2970743	SERPINB6|ENST00000644178.1	-	2948162,2948913,2953043,2954591,2955523,2959167,2966399	2948699,2949069,2953186,2954709,2955670,2959342,2970743	0.888889
transverse_colon_female_adult_53_years	chr4	4269605	4269614	4269609	-	High_confidence	22	22	47	2.268311	3.864025	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.957447
transverse_colon_female_adult_53_years	chr12	120429608	120429619	120429608	+	RAMPAGE_only	9	9	33	1.592644	4.601410	chr12	120429527	120429802	LINE|L2|L2b	-	chr12	120438089	120440742	COX6A1|NM_004373.3	+	120438089,120438378,120440453	120438229,120438521,120440742	0.909091
transverse_colon_female_adult_53_years	chr4	110134816	110134836	110134825	+	High_confidence	5	5	17	0.820453	3.734522	chr4	110134680	110134965	SINE|Alu|AluJr	+	chr4	110134611	110138695	STRG.36826.1	+	110134611	110138695	0.941176
transverse_colon_female_adult_53_years	chr12	20447026	20447052	20447051	+	RAMPAGE_only	4	4	14	0.675667	3.182006	chr12	20446619	20447254	LINE|L2|L2a	-	chr12	20392569	20509770	STRG.86262.4	+	20392569,20395554	20395496,20509770	1.000000
transverse_colon_female_adult_53_years	chr7	37977433	37977462	37977461	+	High_confidence	44	45	90	4.343574	5.857536	chr7	37977392	37977492	LINE|L2|L2c	-	chr7	37977524	37978814	STRG.57238.1	+	37977524	37978814	0.911111
transverse_colon_female_adult_53_years	chr11	123061207	123061323	123061256	-	High_confidence	23	24	136	6.563623	5.736143	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.926471
transverse_colon_female_adult_53_years	chr7	7519213	7519215	7519213	-	High_confidence	5	7	11	0.530881	3.459432	chr7	7519045	7519413	LTR|ERVL-MaLR|THE1B	-	chr7	7417631	7520073	COL28A1|ENST00000444268.1	-	7417631,7419884,7432472,7432631,7436394,7437393,7440789,7443584,7444417,7452318,7453439,7456043,7474600,7477111,7489388,7490577,7506013,7507116,7511090,7511651,7515813,7517795,7520061	7417927,7419953,7432541,7432700,7436463,7437462,7440861,7443653,7444489,7452387,7453508,7456112,7474669,7477180,7489457,7490646,7506067,7507161,7511135,7511844,7515840,7517837,7520073	0.909091
transverse_colon_female_adult_53_years	chr1	209107530	209107531	209107530	-	High_confidence	46	49	53	2.557882	4.630868	chr1	209107420	209107903	LTR|ERV1|LTR2B	-	chr1	209105976	209107303	STRG.10536.1	-	209105976	209107303	0.830189
transverse_colon_female_adult_53_years	chr1	192986909	192986933	192986909	-	RAMPAGE_only	2	2	13	0.627405	2.931209	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192935795	192957713	AL390957.1|ENST00000647436.1	-	192935795,192957303	192935903,192957713	0.846154
transverse_colon_female_adult_53_years	chr1	23838643	23838644	23838643	-	High_confidence	4	4	7	0.337834	2.584963	chr1	23837780	23838651	LTR|ERV1|LTR1A2	+	chr1	23801886	23838620	HMGCL|ENST00000374487.6	-	23801886,23804399,23808134,23810735,23814189,23816674,23817475,23820509,23826083,23838063	23802564,23804525,23808323,23810799,23814338,23816770,23817583,23820593,23826183,23838620	0.714286
transverse_colon_female_adult_53_years	chr1	202551736	202551798	202551797	+	RAMPAGE_only	8	8	40	1.930477	4.934184	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	0.550000
transverse_colon_female_adult_53_years	chr4	48546113	48546193	48546124	-	High_confidence	5	5	38	1.833953	4.271101	chr4	48546053	48546089	LINE|CR1|X7C_LINE	-	chr4	48521093	48546759	FRYL|ENST00000513401.5	-	48521093,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066	48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546759	0.789474
transverse_colon_female_adult_53_years	chr14	102083125	102083130	102083125	-	RAMPAGE_only	4	4	11	0.530881	2.732159	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	1.000000
transverse_colon_female_adult_53_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	87	87	87	4.198788	4.164731	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
transverse_colon_female_adult_53_years	chr14	90399774	90399812	90399774	+	RAMPAGE_only	1	1	10	0.482619	3.121928	chr14	90399671	90399778	SINE|5S-Deu-L2|AmnSINE1	+	chr14	90398261	90405107	CALM1|ENST00000544280.6	+	90398261,90400064,90401258,90403861,90404378,90404688	90398488,90400095,90401402,90403968,90404514,90405107	1.000000
transverse_colon_female_adult_53_years	chr1	150765957	150765978	150765957	-	High_confidence	20	21	33	1.592644	4.476064	chr1	150765956	150766249	SINE|Alu|AluJr	+	chr1	150730195	150765957	CTSS|NM_004079.4	-	150730195,150747776,150750005,150751780,150755000,150757857,150764637,150765697	150733145,150747879,150750171,150752008,150755150,150757980,150764764,150765957	0.969697
transverse_colon_female_adult_53_years	chr15	85433962	85433963	85433962	+	RAMPAGE_only	7	8	8	0.386095	3.000000	chr15	85433963	85439965	LINE|L1|L1PA2	+	chr15	85380728	85745610	AKAP13|ENST00000361243.6	+	85380728,85485709,85521427,85533583,85543771,85575130,85578929,85585701,85639373,85645817,85655416,85662387,85664562,85669721,85682157,85684740,85693276,85708018,85710578,85715787,85717289,85718006,85719075,85721990,85722229,85723071,85726409,85727065,85727380,85730512,85734991,85735559,85736089,85740221,85741045,85743491,85744627	85380798,85485753,85521575,85533880,85543955,85575329,85582107,85585823,85639449,85645954,85655787,85662453,85664755,85669830,85682212,85684873,85693451,85708086,85710645,85715923,85717402,85718159,85719326,85722116,85722347,85723320,85726486,85727247,85727463,85730707,85735150,85735630,85736134,85740272,85741495,85743825,85745610	0.500000
transverse_colon_female_adult_53_years	chr1	222615753	222615760	222615753	+	RAMPAGE_only	13	13	30	1.447858	4.349192	chr1	222615172	222615888	LINE|L2|L2a	-	chr1	222618085	222668012	MIA3|ENST00000344922.9	+	222618085,222621158,222624767,222627574,222632164,222633103,222645553,222648828,222650291,222650633,222650792,222651976,222652227,222653007,222653227,222654242,222654388,222654654,222658721,222659452,222659621,222659733,222659905,222660176,222662055,222662252,222663997,222665308	222618243,222621292,222624854,222630389,222632326,222633249,222645685,222648850,222650380,222650711,222650903,222652048,222652332,222653130,222653339,222654298,222654479,222654793,222658823,222659513,222659657,222659801,222660006,222660314,222662124,222662332,222664148,222668012	0.966667
transverse_colon_female_adult_53_years	chr13	30376944	30376965	30376953	-	High_confidence	19	23	59	2.847454	5.079589	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30374002	30376964	LINC00426|ENST00000416261.1	-	30374002,30375466,30376826	30374093,30375776,30376964	0.525424
transverse_colon_female_adult_53_years	chr1	23436216	23436241	23436240	-	High_confidence	6	7	13	0.627405	3.584963	chr1	23436174	23436462	SINE|Alu|AluSz6	-	chr1	23428562	23436677	ASAP3|ENST00000495646.5	-	23428562,23431034,23431695,23433076,23433424,23433625,23434253,23434532,23435850,23436559	23429930,23431125,23431918,23433272,23433532,23433693,23434369,23434618,23436028,23436677	0.769231
transverse_colon_female_adult_53_years	chr4	69773428	69773429	69773428	-	High_confidence	10	11	11	0.530881	2.921928	chr4	69772613	69773518	LTR|ERV1|MER41-int	+	chr4	69726093	69773510	STRG.34555.1	-	69726093,69730500,69733412,69734137,69749720,69754669,69755069,69758303,69760458,69773427	69727200,69730681,69733507,69734264,69749818,69754798,69755261,69760250,69760571,69773510	0.909091
transverse_colon_female_adult_53_years	chr17	75720489	75720512	75720511	+	High_confidence	3	3	8	0.386095	2.807355	chr17	75720318	75720616	SINE|Alu|AluSx1	+	chr17	75721327	75757818	ITGB4|NM_001321123.1	+	75721327,75724693,75727194,75727403,75727650,75728376,75729264,75730240,75730874,75731245,75731811,75732162,75733489,75736050,75736287,75736564,75737321,75737537,75739671,75739879,75740357,75740792,75740981,75742340,75742581,75743712,75748840,75750110,75750679,75750973,75752173,75752445,75754575,75755700,75756428,75756703,75756942,75757199,75757415	75721563,75724782,75727277,75727505,75727855,75728473,75729436,75730504,75730964,75731368,75731973,75732239,75733692,75736154,75736386,75736694,75737444,75737644,75739705,75740071,75740461,75740851,75741005,75742489,75742761,75743861,75749045,75750268,75750860,75751111,75752356,75752577,75754815,75755850,75756617,75756859,75757107,75757310,75757818	0.625000
transverse_colon_female_adult_53_years	chr1	15758186	15758210	15758186	+	High_confidence	3	3	12	0.579143	2.663533	chr1	15758111	15758311	SINE|MIR|MIRb	-	chr1	15758418	15786594	FBLIM1|ENST00000375766.7	+	15758418,15764495,15764963,15767375,15768527,15770408,15774617,15777169,15784547	15758848,15764685,15765233,15767563,15768630,15770578,15774796,15777287,15786594	0.916667
transverse_colon_female_adult_53_years	chr7	99208111	99208119	99208118	-	High_confidence	14	25	44	2.123525	4.615933	chr7	99208098	99208244	SINE|Alu|AluSx3	-	chr7	99173573	99207506	KPNA7|ENST00000327442.6	-	99173573,99177919,99181882,99184928,99188299,99193018,99195069,99196083,99203105,99207400	99173794,99178066,99182065,99185162,99188563,99193101,99195338,99196166,99203240,99207506	0.772727
transverse_colon_female_adult_53_years	chr20	31566028	31566077	31566028	+	High_confidence	7	9	29	1.399596	4.513153	chr20	31566028	31566111	SINE|MIR|MIR3	+	chr20	31566056	31569252	HM13|ENST00000493364.1	+	31566056,31569119	31566295,31569252	0.655172
transverse_colon_female_adult_53_years	chr11	96387594	96387605	96387594	-	High_confidence	4	4	10	0.482619	3.169925	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	0.800000
transverse_colon_female_adult_53_years	chr20	37382696	37382700	37382696	+	High_confidence	6	8	12	0.579143	3.084963	chr20	37382563	37382753	SINE|MIR|MIRb	-	chr20	37382603	37405432	SRC|ENST00000358208.8	+	37382603,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.750000
transverse_colon_female_adult_53_years	chr20	3795750	3795781	3795750	+	High_confidence	8	8	49	2.364835	5.124914	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
transverse_colon_female_adult_53_years	chr16	72627719	72627766	72627719	-	RAMPAGE_only	14	14	92	4.440098	6.080574	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.608696
transverse_colon_female_adult_53_years	chr1	183590910	183590926	183590910	-	High_confidence	3	3	10	0.482619	2.921928	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.700000
transverse_colon_female_adult_53_years	chr7	80369531	80369569	80369531	+	High_confidence	7	7	17	0.820453	3.280639	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.823529
transverse_colon_female_adult_53_years	chr1	75375936	75376018	75375936	-	High_confidence	10	10	57	2.750930	4.970412	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75222417	75376272	STRG.4091.1	-	75222417,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75376272	0.771930
transverse_colon_female_adult_53_years	chr6	43013375	43013393	43013392	-	High_confidence	17	17	29	1.399596	4.392127	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
transverse_colon_female_adult_53_years	chr18	7946878	7946898	7946897	+	High_confidence	10	10	36	1.737430	4.551462	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.750000
transverse_colon_female_adult_53_years	chr17	49646471	49646499	49646495	-	High_confidence	6	6	40	1.930477	4.165838	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.850000
transverse_colon_female_adult_53_years	chr8	37599844	37599862	37599861	-	High_confidence	11	11	28	1.351334	4.494680	chr8	37599819	37600081	LINE|CR1|Plat_L3	+	chr8	37597479	37599858	AC124067.4|ENST00000519691.1	-	37597479	37599858	0.964286
transverse_colon_female_adult_53_years	chr3	33838256	33838326	33838256	+	RAMPAGE_only	8	8	49	2.364835	5.150324	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.918367
transverse_colon_female_adult_53_years	chr8	2727222	2727264	2727243	+	High_confidence	5	5	17	0.820453	3.452820	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.882353
transverse_colon_female_adult_53_years	chr4	73144752	73144771	73144770	-	RAMPAGE_only	4	5	12	0.579143	2.845351	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.916667
transverse_colon_female_adult_53_years	chr3	57267745	57267783	57267772	+	RAMPAGE_only	6	6	19	0.916977	3.892407	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.842105
transverse_colon_female_adult_53_years	chr1	147173225	147173261	147173260	+	High_confidence	4	4	10	0.482619	3.169925	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.800000
transverse_colon_female_adult_53_years	chr8	24387769	24387790	24387789	-	RAMPAGE_only	4	5	17	0.820453	3.750000	chr8	24386908	24387825	LTR|ERVK|HERVK22-int	-	chr8	24385719	24548540	STRG.64038.1	-	24385719,24548539	24387991,24548540	0.764706
transverse_colon_female_adult_53_years	chr4	184537514	184537567	184537566	-	High_confidence	16	21	98	4.729669	4.976032	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184534519	184537514	STRG.39389.1	-	184534519	184537514	0.908163
transverse_colon_female_adult_53_years	chr12	55930641	55930642	55930641	+	High_confidence	14	14	14	0.675667	3.664498	chr12	55930357	55930665	SINE|Alu|AluSc8	-	chr12	55930971	55954015	DGKA|ENST00000331886.9	+	55930971,55936422,55937016,55937407,55937977,55938510,55938914,55939185,55939414,55940081,55940313,55940623,55940896,55941251,55941509,55941997,55942173,55951622,55952034,55952340,55952733,55953039,55953349,55953684	55931344,55936567,55937090,55937543,55938052,55938560,55938989,55939305,55939529,55940170,55940433,55940722,55940980,55941325,55941584,55942083,55942263,55951783,55952099,55952431,55952932,55953160,55953410,55954015	0.857143
transverse_colon_female_adult_53_years	chr1	33021381	33021417	33021416	-	RAMPAGE_only	4	4	16	0.772191	3.702820	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	1.000000
transverse_colon_female_adult_53_years	chr17	62520811	62520841	62520840	+	RAMPAGE_only	6	6	11	0.530881	3.277613	chr17	62520890	62521168	SINE|Alu|AluJr	+	chr17	62552304	62613489	STRG.111042.4	+	62552304,62553662,62560015,62565000,62573214,62576708,62578476,62580110,62586134,62596584,62600650,62602041,62606129,62608040	62552397,62553755,62560126,62565137,62573367,62576775,62578574,62580192,62586226,62596674,62600820,62602180,62606241,62613489	0.636364
transverse_colon_female_adult_53_years	chr1	156282208	156282238	156282237	-	High_confidence	4	4	9	0.434357	2.750000	chr1	156282075	156282226	SINE|MIR|MIR3	-	chr1	156249223	156282890	SMG5|NM_001323616.1	-	156249223,156250857,156251402,156252413,156252918,156253448,156259004,156260450,156261332,156263394,156265780,156266540,156267469,156268114,156268289,156272319,156273360,156274596,156277084,156277924,156278935,156281792,156282606	156250670,156250996,156251477,156252504,156253078,156253508,156259163,156260626,156261408,156263570,156266380,156266678,156267678,156268183,156268415,156272398,156273450,156274686,156277241,156278048,156279034,156281924,156282890	0.777778
transverse_colon_female_adult_53_years	chr1	206929155	206929496	206929295	-	RAMPAGE_only	610	696	4038	194.881687	6.707919	chr1	206929265	206929570	SINE|Alu|AluY	+	chr1	206928517	206946466	PIGR|ENST00000356495.4	-	206928517,206931496,206931670,206932455,206932985,206934419,206935485,206937094,206939118,206940488,206946335	206930413,206931555,206931802,206932577,206933166,206934746,206935818,206937751,206939463,206940584,206946466	0.997028
transverse_colon_female_adult_53_years	chr1	195722378	195722382	195722381	-	High_confidence	582	582	1177	56.804296	6.254938	chr1	195721970	195723453	LTR|ERV1|LTR12C	-	chr1	195459449	195722409	STRG.9786.2	-	195459449,195470977,195568876,195690604,195721819	195462590,195471089,195568995,195690765,195722409	0.926083
transverse_colon_female_adult_53_years	chr11	114650811	114650930	114650900	+	High_confidence	127	127	473	22.827894	7.501252	chr11	114650014	114651054	LINE|L1|L1MCc	+	chr11	114650403	114715651	STRG.84100.1	+	114650403,114651241,114679656,114698044,114703990,114705780,114706394	114651045,114651425,114679762,114698778,114704052,114705996,114715651	0.710359
transverse_colon_female_adult_53_years	chr3	125497340	125497355	125497354	-	RAMPAGE_only	5	5	9	0.434357	2.750000	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	0.888889
transverse_colon_female_adult_53_years	chr7	2242922	2242923	2242922	+	High_confidence	10	10	10	0.482619	2.721928	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
transverse_colon_female_adult_53_years	chr11	121465856	121465865	121465856	+	RAMPAGE_only	5	5	10	0.482619	3.121928	chr11	121465836	121465864	DNA|hAT-Charlie|MER5B	-	chr11	121452379	121547024	SORL1|ENST00000532451.1	+	121452379,121470006,121478117,121488031,121490042,121496868,121513002,121514151,121520656,121522585,121522915,121532463,121543547,121545242,121546862	121452616,121470123,121478243,121488193,121490110,121497049,121513104,121514321,121520849,121522703,121522989,121532552,121543726,121545429,121547024	1.000000
transverse_colon_female_adult_53_years	chr12	109070129	109070130	109070129	+	RAMPAGE_only	7	7	8	0.386095	2.807355	chr12	109069527	109070326	LINE|L2|L2a	-	chr12	109067593	109081628	USP30|ENST00000467307.1	+	109067593,109071611,109072304,109073437,109081333	109067627,109071710,109072350,109073532,109081628	0.500000
transverse_colon_female_adult_53_years	chr17	10843565	10843585	10843565	+	RAMPAGE_only	4	4	12	0.579143	3.251629	chr17	10843349	10843935	LTR|ERV1|LTR36	+	chr17	10844673	10880895	AC015908.2|ENST00000645807.1	+	10844673,10847891,10878369,10880471	10844964,10848045,10878524,10880895	0.500000
transverse_colon_female_adult_53_years	chr5	42837772	42837774	42837773	-	RAMPAGE_only	17	22	28	1.351334	4.236369	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.785714
transverse_colon_female_adult_53_years	chr18	6947458	6947461	6947458	-	High_confidence	9	9	17	0.820453	3.852169	chr18	6947365	6947479	SINE|MIR|MIR3	+	chr18	6941885	6947585	STRG.112277.1	-	6941885,6943179,6947162	6942239,6943402,6947585	0.647059
transverse_colon_female_adult_53_years	chr1	155304810	155304822	155304810	+	RAMPAGE_only	13	14	46	2.220049	4.896821	chr1	155304792	155304940	SINE|MIR|MIRb	-	chr1	155306270	155306792	STRG.7396.1	+	155306270	155306792	0.652174
transverse_colon_female_adult_53_years	chr17	39357947	39357957	39357956	-	RAMPAGE_only	6	7	10	0.482619	3.169925	chr17	39357706	39357934	LINE|L1|L1M4a2	-	chr17	39260586	39401623	FBXL20|ENST00000394294.7	-	39260586,39264174,39265396,39268826,39270795,39274969,39281388,39282728,39297126,39298989,39301000,39303584,39343179,39401360	39261567,39264387,39265453,39268871,39270856,39275100,39281463,39282855,39297195,39299084,39301075,39303639,39343241,39401623	0.800000
transverse_colon_female_adult_53_years	chr12	72432463	72432482	72432481	+	High_confidence	79	210	378	18.243011	6.897478	chr12	72432166	72432618	LTR|ERVK|LTR22A	-	chr12	72432343	72670839	STRG.88803.1	+	72432343,72469757,72473066,72499497,72542290,72562164,72562852,72568567,72575254,72575486,72618890,72621107,72621643,72652321,72653015,72656926,72663051	72432566,72469912,72473180,72499635,72542356,72562230,72563040,72568656,72575388,72575542,72619038,72621205,72621751,72652489,72653156,72657008,72670839	0.714286
transverse_colon_female_adult_53_years	chr19	39485748	39485794	39485793	+	High_confidence	3	3	8	0.386095	2.750000	chr19	39485832	39486027	SINE|MIR|MIR1_Amn	+	chr19	39485590	39491230	TIMM50|ENST00000595961.5	+	39485590,39486396,39488060,39488538,39489718	39486291,39486495,39488217,39488645,39491230	1.000000
transverse_colon_female_adult_53_years	chrX	2964562	2964584	2964583	-	High_confidence	5	5	11	0.530881	2.646439	chrX	2964489	2964607	SINE|Alu|AluJb	-	chrX	2934631	2964453	ARSE|NM_001282628.1	-	2934631,2936741,2938094,2943064,2945997,2949303,2953142,2955415,2958273,2959602,2960377,2964223	2935190,2936863,2938257,2943199,2946134,2949727,2953265,2955537,2958435,2959888,2960420,2964453	0.909091
transverse_colon_female_adult_53_years	chr8	94950148	94950164	94950163	-	High_confidence	4	5	10	0.482619	3.169925	chr8	94950149	94950305	SINE|MIR|MIRc	+	chr8	94925971	94949411	TP53INP1|ENST00000342697.4	-	94925971,94939859,94940829,94949153	94930728,94940220,94941091,94949411	0.500000
transverse_colon_female_adult_53_years	chr22	30667200	30667255	30667233	-	High_confidence	8	8	34	1.640906	4.165014	chr22	30667090	30667253	SINE|MIR|MIRc	-	chr22	30663970	30667353	DUSP18|ENST00000442752.1	-	30663970,30666806	30664080,30667353	0.911765
transverse_colon_female_adult_53_years	chr8	18919214	18919259	18919233	-	RAMPAGE_only	4	4	13	0.627405	3.584963	chr8	18918926	18919366	LINE|CR1|L3	-	chr8	18530710	18887034	PSD3|ENST00000523619.5	-	18530710,18556208,18572527,18575127,18600363,18632612,18655641,18765448,18799294,18801269,18804521,18804703,18867673,18871625,18886935	18535958,18556352,18572672,18575285,18600434,18632806,18655685,18765538,18799353,18801382,18804602,18804898,18868069,18872733,18887034	0.692308
transverse_colon_female_adult_53_years	chr6	106731838	106731839	106731838	-	RAMPAGE_only	7	7	7	0.337834	2.521641	chr6	106731708	106731965	LINE|L2|L2c	+	chr6	106717638	106718480	STRG.51635.1	-	106717638	106718480	0.571429
transverse_colon_female_adult_53_years	chr9	98807070	98807075	98807074	-	High_confidence	3	3	7	0.337834	2.584963	chr9	98806836	98807126	SINE|Alu|AluJr4	-	chr9	98798465	98807564	AL807776.1|ENST00000647710.1	-	98798465,98806770	98799609,98807564	0.714286
transverse_colon_female_adult_53_years	chr21	29077464	29077501	29077486	+	High_confidence	20	20	60	2.895716	4.700797	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.533333
transverse_colon_female_adult_53_years	chr7	107792094	107792136	107792094	-	RAMPAGE_only	5	5	18	0.868715	3.683542	chr7	107792048	107792181	LINE|L1|L1MB7	+	chr7	107765471	107803207	SLC26A3|ENST00000340010.9	-	107765471,107767578,107767765,107772053,107773919,107774776,107776451,107776636,107778174,107779667,107782796,107782979,107783204,107786826,107787356,107789523,107791047,107791829,107793741,107794378,107803110	107765878,107767644,107767908,107772108,107774153,107774872,107776544,107776706,107778281,107779763,107782874,107783093,107783352,107786909,107787509,107789688,107791235,107791940,107793881,107794597,107803207	0.666667
transverse_colon_female_adult_53_years	chr3	9792225	9792255	9792225	-	High_confidence	4	4	12	0.579143	3.022055	chr3	9792183	9792281	SINE|MIR|MIR	+	chr3	9789702	9792408	TADA3|ENST00000492635.1	-	9789702,9791259,9792215	9789963,9791381,9792408	0.750000
transverse_colon_female_adult_53_years	chr6	11728546	11728555	11728554	-	High_confidence	9	9	16	0.772191	3.640224	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.750000
transverse_colon_female_adult_53_years	chr15	34588448	34588451	34588450	-	High_confidence	3	5	7	0.337834	2.807355	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	1.000000
transverse_colon_female_adult_53_years	chr14	95146665	95146685	95146668	-	RAMPAGE_only	4	4	10	0.482619	3.121928	chr14	95146085	95146813	LTR|ERV1|LTR27C	+	chr14	95086228	95141718	DICER1|ENST00000393063.5	-	95086228,95091033,95091202,95093887,95095824,95099779,95103345,95105070,95105677,95106040,95107607,95107879,95108323,95111316,95112171,95113091,95115666,95116452,95117621,95124195,95126579,95129471,95130057,95131508,95132514,95133314,95140658,95141682	95090663,95091109,95091365,95094156,95096713,95099935,95104126,95105246,95105783,95106223,95107761,95108093,95108503,95111456,95112247,95113224,95115821,95116695,95117754,95124668,95126748,95129632,95130192,95131639,95132677,95133503,95140759,95141718	0.500000
transverse_colon_female_adult_53_years	chr12	4736105	4736127	4736126	-	High_confidence	23	25	37	1.785692	5.003258	chr12	4735148	4736323	LINE|L1|L1M4b	+	chr12	4732161	4736176	STRG.85104.1	-	4732161	4736176	0.972973
transverse_colon_female_adult_53_years	chr8	30812434	30812454	30812453	-	High_confidence	9	9	19	0.916977	3.683542	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.947368
transverse_colon_female_adult_53_years	chr19	50016122	50016131	50016128	-	RAMPAGE_only	3	3	8	0.386095	2.807355	chr19	50016092	50016166	DNA|hAT-Ac|OldhAT1	-	chr19	49994862	50020647	VRK3|ENST00000599342.5	-	49994862,50000789,50007568,50009235,50015731,50016023,50020584	49994919,50000854,50007826,50009385,50015793,50016163,50020647	0.875000
transverse_colon_female_adult_53_years	chr11	114549917	114549920	114549917	-	RAMPAGE_only	4	5	8	0.386095	2.521641	chr11	114548053	114550673	LINE|L1|L1M5	+	chr11	114521715	114551201	STRG.84086.12	-	114521715,114522878,114527839,114528795,114531331	114522503,114523091,114527901,114530908,114551201	0.875000
transverse_colon_female_adult_53_years	chr16	20676155	20676162	20676161	-	High_confidence	8	10	14	0.675667	3.467720	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.857143
transverse_colon_female_adult_53_years	chr4	39508572	39508576	39508572	-	RAMPAGE_only	2	2	9	0.434357	2.750000	chr4	39508247	39508532	SINE|Alu|AluJr	-	chr4	39498787	39526557	UGDH|ENST00000506179.5	-	39498787,39503874,39504416,39505236,39505617,39508565,39509759,39510352,39510660,39514082,39521350,39526383	39500253,39503985,39504508,39505370,39505748,39508660,39509907,39510550,39510861,39514184,39521519,39526557	0.888889
transverse_colon_female_adult_53_years	chr1	220090399	220090421	220090420	-	High_confidence	58	62	220	10.617625	5.802978	chr1	220090323	220090490	SINE|Alu|AluJr	-	chr1	220057483	220090462	BPNT1|ENST00000469520.6	-	220057483,220059685,220062756,220067301,220069383,220072849,220073966,220079726,220089685,220090286	220058992,220059791,220062954,220067393,220069432,220072957,220074071,220079854,220089951,220090462	0.909091
transverse_colon_female_adult_53_years	chr11	16998148	16998157	16998150	-	RAMPAGE_only	3	6	11	0.530881	2.846439	chr11	16997940	16998187	SINE|MIR|MIR	+	chr11	16787483	17014412	PLEKHA7|ENST00000355661.7	-	16787483,16789774,16790797,16791010,16794487,16794909,16800973,16801667,16802971,16803226,16813112,16816177,16816799,16826119,16841546,16851190,16852282,16854888,16855802,16871098,17013988,17014124,17014315	16789296,16789878,16790915,16791199,16794714,16795018,16801075,16801817,16803052,16803295,16813166,16816264,16817322,16826590,16841722,16851291,16852355,16854993,16855914,16871182,17014046,17014201,17014412	0.727273
transverse_colon_female_adult_53_years	chr2	207662375	207662376	207662375	+	High_confidence	17	17	19	0.916977	3.616349	chr2	207662277	207662604	LTR|ERVL-MaLR|MLT1A1	+	chr2	207662374	207667024	LINC01857|ENST00000429730.1	+	207662374,207666680	207662522,207667024	0.789474
transverse_colon_female_adult_53_years	chr11	112151709	112151922	112151764	-	RAMPAGE_only	10	10	98	4.729669	5.207139	chr11	112151537	112152480	LINE|L2|L2c	+	chr11	112143260	112164074	STRG.83899.3	-	112143260,112148602,112150071,112154974,112163905	112143817,112148736,112153603,112155061,112164074	0.969388
transverse_colon_female_adult_53_years	chr5	52745608	52745609	52745608	-	RAMPAGE_only	7	7	11	0.530881	2.663533	chr5	52745284	52745728	LTR|ERVL|MLT2A1	-	chr5	52675192	52788026	AC022126.1|ENST00000502995.1	-	52675192,52685604,52785534,52787917	52675532,52685690,52785592,52788026	0.545455
transverse_colon_female_adult_53_years	chr3	183318411	183318434	183318411	-	RAMPAGE_only	4	4	11	0.530881	3.459432	chr3	183318372	183318522	SINE|MIR|MIR3	+	chr3	183298426	183400493	MCF2L2|ENST00000459750.5	-	183298426,183309715,183310515,183310914,183311647,183318067,183323234,183338799,183341539,183379296,183389695,183400350	183300196,183309835,183310655,183311029,183311772,183318217,183323351,183338919,183341630,183379411,183389779,183400493	0.636364
transverse_colon_female_adult_53_years	chr16	2759893	2759958	2759957	+	High_confidence	8	9	51	2.461359	4.364012	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.862745
transverse_colon_female_adult_53_years	chr5	131224546	131224568	131224546	-	High_confidence	5	7	19	0.916977	4.037401	chr5	131224178	131224746	LINE|L2|L2	+	chr5	131209413	131224589	STRG.44659.1	-	131209413,131223948	131210153,131224589	0.947368
transverse_colon_female_adult_53_years	chr9	89479889	89479890	89479889	-	High_confidence	155	155	156	7.528862	5.373094	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	0.961538
transverse_colon_female_adult_53_years	chr4	128098315	128098327	128098315	+	RAMPAGE_only	2	2	6	0.289572	2.584963	chr4	128098347	128098409	LINE|L1|L1MC2	+	chr4	128088054	128211131	STRG.37492.6	+	128088054,128091346,128098185,128107138,128114569,128121825,128162193,128178514,128179405,128199438,128200520,128206427,128207255,128209855	128091144,128091512,128098330,128107313,128114742,128122188,128162317,128178642,128179512,128199599,128200665,128206537,128207383,128211131	1.000000
transverse_colon_female_adult_53_years	chr2	55228153	55228159	55228158	-	RAMPAGE_only	19	23	39	1.882215	4.576618	chr2	55228053	55228212	LINE|L2|L2c	+	chr2	55217588	55225453	STRG.14698.7	-	55217588	55225453	0.589744
transverse_colon_female_adult_53_years	chr22	41752503	41752579	41752503	+	High_confidence	8	9	45	2.171787	4.897300	chr22	41752296	41752513	SINE|MIR|MIRb	-	chr22	41752516	41770706	MEI1|ENST00000476614.1	+	41752516,41753948,41758364,41763173,41770685	41752651,41754046,41758533,41763321,41770706	0.555556
transverse_colon_female_adult_53_years	chr11	71745875	71745915	71745914	+	High_confidence	11	11	64	3.088764	4.956705	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.890625
transverse_colon_female_adult_53_years	chr15	80059918	80059933	80059918	+	High_confidence	95	107	239	11.534602	5.628597	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.958159
transverse_colon_female_adult_53_years	chr14	68882879	68882887	68882879	-	High_confidence	3	4	9	0.434357	2.947703	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	1.000000
transverse_colon_female_adult_53_years	chr1	159976859	159976860	159976859	+	RAMPAGE_only	5	6	7	0.337834	2.584963	chr1	159976818	159976895	SINE|Alu|FLAM_A	+	chr1	159961233	159989451	STRG.7567.3	+	159961233,159965498,159976643	159961405,159965645,159989451	0.714286
transverse_colon_female_adult_53_years	chr10	103890335	103890336	103890335	-	RAMPAGE_only	9	11	13	0.627405	3.392747	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103917669	STN1|ENST00000369764.1	-	103882554,103889071,103892129,103897547,103898876,103900061,103905090,103910526,103917461	103882841,103889144,103892252,103897719,103899000,103900223,103905156,103910622,103917669	1.000000
transverse_colon_female_adult_53_years	chr7	107774354	107774355	107774354	-	RAMPAGE_only	5	5	7	0.337834	2.521641	chr7	107774269	107774556	SINE|Alu|AluJb	+	chr7	107765471	107803207	SLC26A3|ENST00000340010.9	-	107765471,107767578,107767765,107772053,107773919,107774776,107776451,107776636,107778174,107779667,107782796,107782979,107783204,107786826,107787356,107789523,107791047,107791829,107793741,107794378,107803110	107765878,107767644,107767908,107772108,107774153,107774872,107776544,107776706,107778281,107779763,107782874,107783093,107783352,107786909,107787509,107789688,107791235,107791940,107793881,107794597,107803207	0.857143
transverse_colon_female_adult_53_years	chr11	121586131	121586139	121586131	+	RAMPAGE_only	2	2	8	0.386095	2.521641	chr11	121585554	121586209	LINE|L1|L1ME4b	-	chr11	121576837	121629678	SORL1|ENST00000534286.5	+	121576837,121577280,121583457,121586221,121588019,121589258,121590039,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121577038,121577400,121583583,121586329,121588151,121589390,121590174,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121629678	0.625000
transverse_colon_female_adult_53_years	chr11	67633782	67633788	67633783	-	RAMPAGE_only	7	11	18	0.868715	3.947703	chr11	67633313	67633935	LINE|L2|L2a	+	chr11	67631302	67639560	TBX10|NM_005995.4	-	67631302,67632317,67632602,67632947,67634188,67634815,67634995,67639465	67631894,67632412,67632670,67633103,67634360,67634917,67635263,67639560	0.500000
transverse_colon_female_adult_53_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	12	13	13	0.627405	3.584963	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.615385
transverse_colon_female_adult_53_years	chr20	51627627	51627655	51627627	-	RAMPAGE_only	2	2	9	0.434357	2.500000	chr20	51627270	51627593	LINE|L2|L2a	-	chr20	51596513	51768328	ATP9A|ENST00000311637.9	-	51596513,51604816,51607526,51608517,51610100,51613676,51617489,51618661,51618953,51622073,51625191,51627599,51628979,51639342,51656937,51669996,51671114,51674152,51676131,51712965,51725818,51729833,51768301	51601347,51605020,51607584,51608626,51610165,51613832,51617554,51618806,51619043,51622172,51625362,51627683,51629072,51639504,51657150,51670109,51671257,51674313,51676208,51713074,51725932,51729978,51768328	0.666667
transverse_colon_female_adult_53_years	chr7	87040212	87040223	87040222	-	High_confidence	7	7	23	1.110024	4.262692	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	87038478	87040793	STRG.59258.7	-	87038478	87040793	0.521739
transverse_colon_female_adult_53_years	chr9	113508363	113508450	113508363	+	RAMPAGE_only	38	38	201	9.700649	6.399245	chr9	113508286	113508373	LINE|CR1|L3	+	chr9	113505261	113551938	STRG.73406.6	+	113505261,113506387,113507286,113514457,113517540,113522929,113529220,113536795,113541319	113505523,113506493,113508580,113514654,113517624,113523041,113529264,113536918,113551938	0.791045
transverse_colon_female_adult_53_years	chr5	148440500	148440516	148440515	+	RAMPAGE_only	5	5	9	0.434357	2.750000	chr5	148440564	148440673	SINE|Alu|AluJo	+	chr5	148394711	148442835	FBXO38|ENST00000513826.1	+	148394711,148398998,148401981,148402347,148404684,148406256,148409123,148410634,148414135,148415927,148416993,148423997,148425521,148433423,148433634,148438331,148439646,148440423,148441123,148441968	148394904,148399132,148402145,148402513,148404822,148406394,148409217,148410765,148414306,148416070,148417204,148424117,148425701,148433524,148433737,148438498,148439792,148440527,148441237,148442835	0.666667
transverse_colon_female_adult_53_years	chr5	148654591	148654620	148654591	-	High_confidence	2	2	8	0.386095	2.750000	chr5	148654529	148654620	SINE|MIR|MIRb	+	chr5	148481551	148654527	HTR4|NR_104445.1	-	148481551,148490599,148509455,148523192,148548667,148550136,148636988,148654061	148483293,148490846,148510024,148523346,148548868,148550262,148637061,148654527	1.000000
transverse_colon_female_adult_53_years	chr7	101217578	101217595	101217578	-	High_confidence	6	6	16	0.772191	3.906891	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.937500
transverse_colon_female_adult_53_years	chr12	13376665	13376734	13376665	-	High_confidence	67	70	345	16.650367	6.173864	chr12	13376413	13376888	LTR|ERVL|MLT2B1	-	chr12	13371088	13376675	STRG.85974.3	-	13371088,13376223,13376513	13375064,13376425,13376675	0.915942
transverse_colon_female_adult_53_years	chr6	140898421	140898430	140898421	-	High_confidence	10	17	36	1.737430	4.926734	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140575787	140898381	AL035446.2|ENST00000650553.1	-	140575787,140620907,140651477,140816131,140898187	140576557,140620995,140651561,140816230,140898381	0.666667
transverse_colon_female_adult_53_years	chr6	2881667	2881676	2881667	-	High_confidence	7	7	12	0.579143	3.251629	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854627	2881636	STRG.47319.1	-	2854627,2881525	2855690,2881636	0.500000
transverse_colon_female_adult_53_years	chr11	76979082	76979094	76979082	-	High_confidence	3	3	9	0.434357	3.169925	chr11	76977630	76979181	LTR|ERV1|MER52A	+	chr11	76955416	76978619	AP002498.1|ENST00000530190.1	-	76955416,76958833,76978400	76955585,76959013,76978619	0.666667
transverse_colon_female_adult_53_years	chr6	47442136	47442138	47442136	+	RAMPAGE_only	6	10	10	0.482619	2.721928	chr6	47441938	47442253	SINE|Alu|AluSx1	-	chr6	47477788	47627263	CD2AP|NM_012120.2	+	47477788,47503279,47533601,47544605,47554645,47574063,47576523,47577008,47579384,47580863,47582002,47595860,47599300,47606164,47607926,47609122,47612472,47624185	47478248,47503440,47533755,47544706,47554766,47574251,47576602,47577103,47579489,47580900,47582065,47596026,47599443,47606277,47608028,47609304,47612536,47627263	1.000000
transverse_colon_female_adult_53_years	chr4	70667382	70667403	70667402	-	High_confidence	7	7	14	0.675667	3.392747	chr4	70667350	70667655	SINE|Alu|AluSx1	+	chr4	70656319	70666975	JCHAIN|ENST00000510437.5	-	70656319,70657210,70662091,70666426,70666848	70656539,70657291,70662215,70666514,70666975	0.785714
transverse_colon_female_adult_53_years	chr5	126600248	126600249	126600248	+	High_confidence	16	18	19	0.916977	4.142664	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	1.000000
transverse_colon_female_adult_53_years	chr12	10553364	10553365	10553364	+	High_confidence	28	32	34	1.640906	4.663910	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.794118
transverse_colon_female_adult_53_years	chr16	30445873	30445877	30445873	-	High_confidence	189	250	413	19.932178	6.933909	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.958838
transverse_colon_female_adult_53_years	chr5	150209138	150209163	150209138	+	RAMPAGE_only	6	6	15	0.723929	3.640224	chr5	150209029	150209231	SINE|MIR|MIRb	-	chr5	150189956	150211072	SLC6A7|ENST00000230671.6	+	150189956,150194727,150196715,150197041,150199227,150201088,150202346,150202578,150203666,150203906,150204531,150204826,150205455,150209405	150190360,150194911,150196847,150197276,150199366,150201223,150202450,150202703,150203779,150204038,150204631,150204927,150205623,150211072	0.800000
transverse_colon_female_adult_53_years	chr19	44725180	44725192	44725180	-	High_confidence	35	35	120	5.791432	6.293895	chr19	44725104	44725160	SINE|MIR|MIR1_Amn	-	chr19	44631533	44725176	STRG.116944.1	-	44631533,44699083,44724836	44632619,44699177,44725176	0.691667
transverse_colon_female_adult_53_years	chr1	19344371	19344410	19344388	-	RAMPAGE_only	8	8	26	1.254810	4.303509	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.923077
transverse_colon_female_adult_53_years	chr1	52708380	52708381	52708380	-	RAMPAGE_only	39	40	55	2.654406	5.356558	chr1	52708320	52708479	LINE|L2|L2c	+	chr1	52684450	52698366	COA7|ENST00000371538.4	-	52684450,52692726,52698220	52688168,52692867,52698366	0.636364
transverse_colon_female_adult_53_years	chr9	114394412	114394413	114394412	-	High_confidence	7	9	9	0.434357	2.750000	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	0.888889
transverse_colon_female_adult_53_years	chr6	33577909	33577914	33577909	-	RAMPAGE_only	4	4	9	0.434357	2.750000	chr6	33577769	33577861	SINE|Alu|AluSx3	-	chr6	33572551	33580242	BAK1|ENST00000374467.3	-	33572551,33574033,33575297,33575792,33577534,33580024	33573907,33574214,33575441,33575928,33577635,33580242	0.777778
transverse_colon_female_adult_53_years	chr8	116648828	116648884	116648828	-	RAMPAGE_only	4	4	33	1.592644	4.567100	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.939394
transverse_colon_male_adult_37_years	chr9	74822482	74822492	74822487	-	High_confidence	641	694	1246	93.308353	6.895819	chr9	74822251	74822549	SINE|Alu|AluJb	-	chr9	74722483	74822526	STRG.39585.2	-	74722483,74728238,74732684,74738406,74739366,74739722,74742560,74744094,74747888,74750663,74752276,74755352,74761695,74761998,74771702,74775882,74782361,74782678,74785873,74792623,74796740,74800253,74801897,74803793,74808033,74810814,74812298,74816668,74816891,74820303,74821668,74822341	74724746,74728345,74732736,74738612,74739449,74740009,74742626,74744145,74747914,74750722,74752368,74755473,74761808,74763134,74771835,74776076,74782476,74782853,74786125,74792770,74796893,74800482,74802175,74803886,74808174,74810868,74812433,74816769,74816964,74820427,74821837,74822526	0.897271
transverse_colon_male_adult_37_years	chr11	114643614	114643839	114643670	-	RAMPAGE_only	35	35	191	14.303287	6.158325	chr11	114642325	114644484	LINE|L1|L1PA7	-	chr11	114640648	114651541	STRG.48457.5	-	114640648,114648240,114651162	114644382,114648345,114651541	1.000000
transverse_colon_male_adult_37_years	chr11	64242546	64242549	64242546	+	High_confidence	12	12	21	1.572613	3.984184	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.952381
transverse_colon_male_adult_37_years	chr19	5680191	5680261	5680240	-	High_confidence	4	4	16	1.198181	3.773557	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.937500
transverse_colon_male_adult_37_years	chr1	2048517	2048550	2048549	+	RAMPAGE_only	2	3	11	0.823750	3.321928	chr1	2048414	2048562	LINE|L2|L2a	-	chr1	2050469	2185395	PRKCZ|ENST00000378567.7	+	2050469,2055440,2056483,2059540,2135261,2144209,2146026,2148871,2150789,2155994,2169517,2172054,2172300,2173896,2174753,2175223,2184582,2184921	2050701,2055562,2056573,2059591,2135347,2144341,2146108,2148924,2150978,2156092,2169604,2172190,2172388,2174016,2174833,2175313,2184698,2185395	0.909091
transverse_colon_male_adult_37_years	chr10	16794128	16794129	16794128	-	RAMPAGE_only	7	7	11	0.823750	3.121928	chr10	16793814	16794303	LTR|ERVL|MLT2B2	+	chr10	16590610	16817383	RSU1|ENST00000377921.7	-	16590610,16695022,16752538,16752917,16754870,16764389,16782033,16816972	16593496,16695155,16752653,16753000,16754989,16764510,16782084,16817383	0.545455
transverse_colon_male_adult_37_years	chr6	113873326	113873343	113873339	-	High_confidence	15	19	55	4.118748	4.433379	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.963636
transverse_colon_male_adult_37_years	chr7	6590250	6590299	6590292	+	High_confidence	4	4	17	1.273067	3.500000	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.823529
transverse_colon_male_adult_37_years	chr11	71480163	71480217	71480175	+	High_confidence	6	6	35	2.621021	4.025920	chr11	71480150	71480472	SINE|Alu|AluSq2	-	chr11	71480148	71490876	NADSYN1|ENST00000526039.6	+	71480148,71480754,71481355,71482000,71482848,71484311,71485541,71490844	71480274,71480879,71481404,71482025,71483017,71484447,71485648,71490876	0.942857
transverse_colon_male_adult_37_years	chr9	74847938	74847958	74847957	-	RAMPAGE_only	7	7	15	1.123295	3.640224	chr9	74847872	74848586	DNA|TcMar-Tigger|MER44C	-	chr9	74722494	74887347	TRPM6|ENST00000361255.7	-	74722494,74728238,74732684,74738406,74739366,74739722,74742560,74744094,74747888,74750663,74752276,74755352,74761695,74761998,74771702,74775882,74782361,74782678,74785873,74788613,74792623,74796740,74800253,74801897,74803793,74808033,74810814,74812298,74816668,74816891,74820303,74821668,74827777,74833997,74840023,74842165,74855526,74858668,74887230	74724746,74728345,74732736,74738612,74739449,74740009,74742626,74744145,74747914,74750722,74752368,74755473,74761808,74763134,74771835,74776076,74782476,74782853,74786125,74788742,74792770,74796893,74800482,74802175,74803886,74808174,74810868,74812433,74816769,74816964,74820427,74821837,74827949,74834122,74840237,74842343,74855565,74858748,74887347	1.000000
transverse_colon_male_adult_37_years	chr14	55671844	55671859	55671858	+	High_confidence	5	5	10	0.748863	2.947703	chr14	55671902	55672073	DNA|hAT-Charlie|MER5A	+	chr14	55671861	55674304	KTN1|ENST00000555506.1	+	55671861,55672629,55672928	55671877,55672701,55674304	0.500000
transverse_colon_male_adult_37_years	chr9	32445665	32445700	32445665	-	High_confidence	4	4	9	0.673977	2.947703	chr9	32444664	32448809	LINE|L1|L1PA7	-	chr9	32445302	32446213	STRG.38862.1	-	32445302	32446213	0.888889
transverse_colon_male_adult_37_years	chr1	32768074	32768112	32768074	+	RAMPAGE_only	4	5	14	1.048408	2.638460	chr1	32768079	32768253	SINE|MIR|MIR3	+	chr1	32765666	32774970	KIAA1522|ENST00000373480.1	+	32765666,32767786,32768061,32768651,32769672,32769879,32772864	32765827,32767957,32768117,32768775,32769786,32772441,32774970	0.928571
transverse_colon_male_adult_37_years	chr6	25753297	25753313	25753297	+	RAMPAGE_only	2	2	9	0.673977	3.000000	chr6	25753191	25754237	LINE|L2|L2	-	chr6	25754695	25772482	STRG.27423.1	+	25754695,25761926,25768335,25768984,25770066	25754781,25762053,25768435,25769190,25772482	0.777778
transverse_colon_male_adult_37_years	chr19	52093952	52093991	52093990	-	High_confidence	4	4	9	0.673977	2.947703	chr19	52093852	52094032	SINE|Alu|AluJb	+	chr19	52076907	52093899	ZNF841|ENST00000599430.1	-	52076907,52084786,52088936,52093845	52077084,52084878,52089002,52093899	0.888889
transverse_colon_male_adult_37_years	chr19	55333930	55333965	55333961	-	High_confidence	3	3	9	0.673977	2.500000	chr19	55333705	55334001	LINE|L1|L1MB5	-	chr19	55312579	55333955	STRG.69258.1	-	55312579,55316785,55320038,55320390,55320557,55320968,55322647,55333903	55313055,55316966,55320166,55320458,55320617,55321093,55322743,55333955	0.555556
transverse_colon_male_adult_37_years	chr14	55796687	55796689	55796687	-	High_confidence	4	7	8	0.599091	2.521641	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796688	LINC00520|ENST00000649892.1	-	55781136,55793367,55796602	55782581,55793456,55796688	0.500000
transverse_colon_male_adult_37_years	chr4	151310010	151310011	151310010	-	High_confidence	10	10	15	1.123295	3.640224	chr4	151310002	151310066	SINE|Alu|AluJb	+	chr4	151309546	151310009	STRG.21826.1	-	151309546	151310009	0.933333
transverse_colon_male_adult_37_years	chr4	1241443	1241458	1241457	-	High_confidence	4	4	8	0.599091	2.750000	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1211913	1241923	STRG.18893.2	-	1211913,1212912,1213477,1214342,1215990,1225359,1228198,1238182,1241324	1212426,1213030,1213605,1214473,1216205,1225566,1228343,1238337,1241923	0.875000
transverse_colon_male_adult_37_years	chr15	45441877	45441878	45441877	-	High_confidence	14	15	15	1.123295	3.521641	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45430651	45441808	AC025580.1|ENST00000559553.1	-	45430651,45433612,45441780	45430814,45434150,45441808	0.866667
transverse_colon_male_adult_37_years	chr12	132782313	132782323	132782313	-	RAMPAGE_only	5	5	11	0.823750	3.459432	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132768914	132822311	GOLGA3|ENST00000450791.6	-	132768914,132774156,132775140,132776633,132776957,132777665,132780797,132782295,132784163,132786338,132786692,132789026,132791215,132795851,132796538,132798339,132801766,132804715,132807176,132807890,132813306,132816539,132821995	132773294,132774320,132775305,132776756,132777090,132777805,132780914,132782493,132784307,132786555,132786787,132789290,132791293,132796220,132796700,132798477,132801969,132805022,132807288,132808549,132813419,132816812,132822311	1.000000
transverse_colon_male_adult_37_years	chr16	69996417	69996464	69996417	-	RAMPAGE_only	44	44	89	6.664882	5.493890	chr16	69996297	69996477	SINE|MIR|MIRb	+	chr16	69993019	70021930	PDXDC2P-NPIPB14P|ENST00000525331.5	-	69993019,69996068,69996389,70010750,70011840,70014103,70018046,70021823	69993248,69996226,69996468,70010856,70011929,70014167,70018097,70021930	0.966292
transverse_colon_male_adult_37_years	chr5	147839192	147839196	147839192	-	High_confidence	4	6	14	1.048408	3.378783	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.571429
transverse_colon_male_adult_37_years	chr19	10400617	10400626	10400625	-	RAMPAGE_only	5	5	9	0.673977	2.500000	chr19	10400416	10400718	SINE|Alu|AluJb	+	chr19	10395022	10403511	CDC37|ENST00000588869.1	-	10395022,10395227,10395927,10400574,10403377	10395143,10395543,10396203,10400693,10403511	0.888889
transverse_colon_male_adult_37_years	chr5	133089677	133089678	133089677	+	RAMPAGE_only	6	6	8	0.599091	2.807355	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133092681	133104477	STRG.25367.1	+	133092681,133096097,133097160,133099544,133101758,133103864,133104232	133092789,133096250,133097286,133099652,133101878,133104026,133104477	0.750000
transverse_colon_male_adult_37_years	chr6	35643365	35643409	35643365	-	RAMPAGE_only	4	4	15	1.123295	3.807355	chr6	35643239	35643389	SINE|MIR|MIRb	+	chr6	35573584	35688915	FKBP5|ENST00000539068.5	-	35573584,35576993,35580035,35587033,35591129,35597247,35619095,35620131,35637013,35642719,35688731	35575942,35577233,35580221,35587117,35591220,35597404,35619210,35620274,35637158,35642843,35688915	0.600000
transverse_colon_male_adult_37_years	chr20	3795740	3795754	3795750	+	High_confidence	4	5	15	1.123295	3.128085	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.933333
transverse_colon_male_adult_37_years	chr16	67183549	67183575	67183549	-	High_confidence	6	6	15	1.123295	3.506891	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67176770	67183586	KIAA0895L|ENST00000563831.2	-	67176770,67178198,67183261	67176975,67178504,67183586	0.533333
transverse_colon_male_adult_37_years	chr1	2551031	2551052	2551031	-	RAMPAGE_only	4	4	9	0.673977	3.169925	chr1	2550899	2551364	LINE|L1|L1ME2	-	chr1	2549919	2552106	TNFRSF14-AS1|ENST00000449660.5	-	2549919,2550572,2550991	2550274,2550731,2552106	0.888889
transverse_colon_male_adult_37_years	chr6	101203249	101203262	101203261	+	RAMPAGE_only	8	8	17	1.273067	3.381580	chr6	101203057	101203452	LTR|ERVL-MaLR|MLT1A1	+	chr6	101181256	102070083	GRIK2|ENST00000421544.6	+	101181256,101205076,101244629,101398984,101621948,101626379,101676622,101682552,101686179,101799647,101802330,101818369,101859286,101889639,101924600,101928414,102035340,102055329,102068346	101181372,101205143,101244656,101399392,101622116,101626637,101676804,101682606,101686353,101799791,101802438,101818483,101859493,101889863,101924719,101928632,102035566,102055580,102070083	0.764706
transverse_colon_male_adult_37_years	chr15	40807864	40807865	40807864	+	High_confidence	6	6	6	0.449318	2.584963	chr15	40807894	40808104	SINE|MIR|MIRc	+	chr15	40807767	40814521	ZFYVE19|ENST00000561768.5	+	40807767,40809118,40809407,40809851,40810070,40810648,40812698,40813337,40813712,40813942,40814147	40807821,40809240,40809458,40809970,40810216,40810757,40812902,40813417,40813811,40814070,40814521	1.000000
transverse_colon_male_adult_37_years	chr4	128098315	128098327	128098326	+	RAMPAGE_only	7	7	12	0.898636	3.251629	chr4	128098347	128098409	LINE|L1|L1MC2	+	chr4	128091366	128108727	STRG.21365.1	+	128091366,128098185,128107138	128091512,128098330,128108727	0.583333
transverse_colon_male_adult_37_years	chr11	9775633	9775666	9775665	+	High_confidence	5	5	9	0.673977	3.169925	chr11	9775466	9776058	LTR|ERVL|MER21C	+	chr11	9775644	9808038	SBF2-AS1|ENST00000525636.5	+	9775644,9779816,9780375,9807847	9775765,9779942,9780575,9808038	0.555556
transverse_colon_male_adult_37_years	chr8	142344272	142344312	142344272	-	RAMPAGE_only	2	2	8	0.599091	2.500000	chr8	142344146	142344350	DNA|DNA|UCON8	-	chr8	142212166	142354763	TSNARE1|ENST00000520166.5	-	142212166,142229472,142274780,142284412,142300485,142314383,142315002,142318543,142330900,142331753,142343965,142345742,142354636	142212313,142229579,142274863,142284485,142300647,142314440,142315092,142318634,142330970,142331831,142344472,142345892,142354763	1.000000
transverse_colon_male_adult_37_years	chr7	7566512	7566531	7566527	-	High_confidence	4	4	15	1.123295	3.235926	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7552461	7566996	AC004982.2|ENST00000609497.5	-	7552461,7555155,7565913	7552922,7555189,7566996	0.800000
transverse_colon_male_adult_37_years	chr2	37929501	37929533	37929532	+	High_confidence	4	4	11	0.823750	3.095795	chr2	37929546	37929613	LINE|L1|HAL1M8	+	chr2	37928758	38017744	RMDN2|ENST00000406384.5	+	37928758,37929261,37974039,37975211,37981282,37989540,37991219,37997415,38003990,38004135,38017185	37928936,37929729,37974214,37975314,37981343,37989616,37991297,37997514,38004044,38004216,38017744	0.909091
transverse_colon_male_adult_37_years	chr19	754575	754606	754605	+	RAMPAGE_only	3	3	11	0.823750	2.721928	chr19	754477	754640	SINE|Alu|AluSx1	+	chr19	756675	764318	STRG.66999.3	+	756675,759908,763500	758726,760039,764318	0.909091
transverse_colon_male_adult_37_years	chr17	80288857	80288869	80288868	+	High_confidence	8	8	24	1.797272	3.653107	chr17	80288813	80288929	LINE|L2|L2c	-	chr17	80288631	80345549	STRG.65498.3	+	80288631,80289658,80290569,80291627,80294719,80295556,80298320,80306251,80307127,80309017,80313011,80317187,80319189,80325029,80327815,80328327,80332005,80334104,80336160,80337585,80337832,80339200,80343131,80343856,80344677	80288936,80289837,80290728,80291827,80295003,80295813,80298518,80306468,80307201,80309171,80313167,80317277,80319312,80325198,80327989,80328477,80332631,80334270,80336378,80337726,80337997,80340356,80343325,80344015,80345549	0.875000
transverse_colon_male_adult_37_years	chr1	155680504	155680529	155680528	-	High_confidence	2	2	8	0.599091	2.521641	chr1	155680508	155680580	LINE|CR1|L3b	+	chr1	155672361	155680456	YY1AP1|ENST00000496324.5	-	155672361,155676547,155679408,155680415	155672731,155676746,155679512,155680456	0.750000
transverse_colon_male_adult_37_years	chr12	95172688	95172704	95172688	-	RAMPAGE_only	2	2	8	0.599091	2.807355	chr12	95172658	95172733	LINE|CR1|L3	-	chr12	95092827	95217379	FGD6|ENST00000549499.1	-	95092827,95094591,95105006,95106953,95107562,95108347,95108502,95113650,95134738,95137521,95141387,95152810,95152925,95172599,95208842,95217224	95092845,95094694,95105086,95107037,95107631,95108419,95108561,95113701,95134826,95137678,95141539,95152841,95152993,95172744,95211267,95217379	0.875000
transverse_colon_male_adult_37_years	chrX	100703104	100703142	100703141	-	RAMPAGE_only	9	9	19	1.422840	3.683542	chrX	100703070	100703372	SINE|Alu|AluJb	+	chrX	100674490	100731510	SYTL4|ENST00000372989.5	-	100674490,100678390,100679312,100681226,100685989,100686678,100687066,100688350,100689855,100690074,100690562,100691107,100700896,100701219,100701457,100701927,100703092,100704810,100731417	100676176,100678599,100679412,100681335,100686151,100686781,100687245,100688443,100689959,100690165,100690638,100691209,100700999,100701329,100701673,100702107,100703185,100704886,100731510	0.947368
transverse_colon_male_adult_37_years	chr6	144533090	144533097	144533090	+	RAMPAGE_only	5	6	14	1.048408	3.026987	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144479859	144554884	STRG.30181.1	+	144479859,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687	144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554884	0.928571
transverse_colon_male_adult_37_years	chr14	57274833	57274843	57274833	+	RAMPAGE_only	5	5	11	0.823750	2.594907	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	1.000000
transverse_colon_male_adult_37_years	chr1	19344359	19344374	19344359	-	RAMPAGE_only	5	5	15	1.123295	3.182006	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19339358	19342874	STRG.787.7	-	19339358,19342751	19339617,19342874	0.733333
transverse_colon_male_adult_37_years	chr5	117454949	117454953	117454949	+	High_confidence	4	6	12	0.898636	3.251629	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.500000
transverse_colon_male_adult_37_years	chr1	19093555	19093584	19093555	-	High_confidence	2	2	11	0.823750	2.845351	chr1	19093526	19093673	LINE|L2|L2	+	chr1	19092732	19093440	UBR4|ENST00000492606.1	-	19092732,19093312	19092918,19093440	0.909091
transverse_colon_male_adult_37_years	chr2	113184962	113185010	113184988	+	High_confidence	3	3	18	1.347954	3.197160	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	1.000000
transverse_colon_male_adult_37_years	chr1	46411435	46411471	46411470	+	RAMPAGE_only	3	3	8	0.599091	2.500000	chr1	46411370	46411498	SINE|MIR|MIR3	+	chr1	46410051	46411651	FAAH|ENST00000493636.1	+	46410051,46410813,46411611	46410497,46410854,46411651	0.750000
transverse_colon_male_adult_37_years	chr1	174874418	174874458	174874418	+	High_confidence	9	9	24	1.797272	4.001629	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.541667
transverse_colon_male_adult_37_years	chr9	35772166	35772213	35772166	+	High_confidence	7	10	38	2.845680	3.985781	chr9	35772160	35772420	LINE|L2|L2	-	chr9	35772162	35780598	AL133410.1|ENST00000574939.1	+	35772162,35780266	35772376,35780598	0.947368
transverse_colon_male_adult_37_years	chr16	66967738	66967815	66967814	+	High_confidence	6	6	42	3.145225	4.403420	chr16	66967751	66968058	SINE|Alu|AluJr	-	chr16	66967474	66975148	CES3|ENST00000543856.1	+	66967474,66969678,66971171,66972355,66972667,66972853	66967899,66969759,66971319,66972505,66972746,66975148	0.809524
transverse_colon_male_adult_37_years	chr17	4143199	4143200	4143199	+	High_confidence	9	9	14	1.048408	3.235926	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	1.000000
transverse_colon_male_adult_37_years	chr21	37084147	37084170	37084148	+	High_confidence	3	4	13	0.973522	3.418296	chr21	37084122	37084370	LINE|L2|L2	-	chr21	37083625	37093402	TTC3|ENST00000484047.5	+	37083625,37087246,37087832,37088798,37090232,37091292,37093308	37084331,37087401,37088346,37088886,37090286,37091626,37093402	0.923077
transverse_colon_male_adult_37_years	chr21	22062086	22062087	22062086	-	High_confidence	5	5	7	0.524204	2.521641	chr21	22062002	22062278	LINE|L2|L2a	+	chr21	22037174	22062641	STRG.71352.2	-	22037174,22062008	22041435,22062641	0.857143
transverse_colon_male_adult_37_years	chr3	139344535	139344548	139344547	+	High_confidence	6	6	20	1.497726	3.576618	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.750000
transverse_colon_male_adult_37_years	chr15	28274905	28274906	28274905	-	RAMPAGE_only	5	5	7	0.524204	2.584963	chr15	28274761	28274861	SINE|MIR|MIR3	-	chr15	28248694	28299483	STRG.57158.2	-	28248694,28254339,28255871,28256088,28257060,28260776,28262917,28265617,28265816,28268464,28269247,28270694,28272214,28272893,28274290,28274904,28280067,28292887,28299401	28248736,28254518,28255996,28256317,28257261,28260970,28263169,28265731,28265974,28268616,28269436,28270868,28272386,28273004,28274447,28275005,28280287,28293022,28299483	0.857143
transverse_colon_male_adult_37_years	chr3	119235192	119235195	119235194	-	RAMPAGE_only	3	5	8	0.599091	2.521641	chr3	119235077	119235199	LINE|L1|L1MC5a	+	chr3	119211778	119237071	B4GALT4|ENST00000480814.5	-	119211778,119216239,119218711,119224057,119226808,119229846,119236852	119212681,119216344,119218772,119224245,119227041,119230244,119237071	0.625000
transverse_colon_male_adult_37_years	chr5	80253505	80253548	80253505	-	RAMPAGE_only	2	2	8	0.599091	3.000000	chr5	80253406	80253731	LINE|L2|L2c	+	chr5	80177314	80255198	SERINC5|ENST00000513907.1	-	80177314,80177885,80202885,80255081	80177397,80178064,80203053,80255198	0.500000
transverse_colon_male_adult_37_years	chr9	89334715	89334722	89334721	+	High_confidence	3	3	6	0.449318	2.584963	chr9	89334741	89334932	LINE|L1|L1MB3	+	chr9	89334583	89357557	STRG.39850.2	+	89334583,89338457,89339863,89341346,89346881,89348078,89349775,89350631,89357410	89334730,89338580,89339953,89341479,89347048,89348214,89349929,89350852,89357557	0.833333
transverse_colon_male_adult_37_years	chr7	8227638	8227639	8227638	-	RAMPAGE_only	4	4	6	0.449318	2.584963	chr7	8227605	8227885	SINE|Alu|AluJr4	-	chr7	8113922	8235926	ICA1|ENST00000422063.6	-	8113922,8127872,8138839,8138984,8141764,8141968,8143874,8157115,8158526,8218304,8221274,8228600,8232589,8235909	8114044,8128142,8138881,8139047,8141817,8142055,8143972,8157214,8158652,8218503,8221398,8228673,8232755,8235926	0.666667
transverse_colon_male_adult_37_years	chr11	15725721	15725735	15725721	-	RAMPAGE_only	6	6	13	0.973522	2.815072	chr11	15725683	15725794	LINE|CR1|L3	-	chr11	15715955	15716277	STRG.45920.1	-	15715955	15716277	0.923077
transverse_colon_male_adult_37_years	chr9	109251793	109251794	109251793	-	RAMPAGE_only	9	9	14	1.048408	3.700440	chr9	109251693	109251821	LINE|L2|L2c	-	chr9	109171973	109320964	EPB41L4B|NM_019114.4	-	109171973,109176550,109182728,109185488,109192277,109194219,109200235,109203662,109207923,109213699,109216921,109243617,109247755,109251480,109253440,109255510,109255773,109256135,109256392,109258176,109263049,109264979,109267472,109268390,109279816,109320140	109174623,109176696,109182797,109185605,109192355,109194397,109200334,109203730,109208049,109213818,109217145,109243682,109247789,109251511,109253550,109255680,109255843,109256224,109256480,109258297,109263102,109265024,109267551,109268433,109279921,109320964	0.500000
transverse_colon_male_adult_37_years	chr17	16464656	16464696	16464656	-	RAMPAGE_only	3	3	10	0.748863	2.921928	chr17	16464610	16464686	DNA|hAT-Charlie|Charlie24	-	chr17	16441576	16448294	LRRC75A|ENST00000409887.3	-	16441576,16446879,16447844	16444131,16447031,16448294	0.500000
transverse_colon_male_adult_37_years	chr17	39708193	39708230	39708229	+	High_confidence	5	5	12	0.898636	2.913977	chr17	39708092	39708239	SINE|MIR|MIRc	-	chr17	39707403	39726351	ERBB2|ENST00000583038.5	+	39707403,39709317,39709812,39710085,39710339,39711927,39712321,39715285,39715445,39715739,39717319,39719786,39723318,39723537,39723911,39724725,39725048	39708534,39709452,39709881,39710201,39710481,39712047,39712448,39715359,39715536,39716605,39717480,39719834,39723457,39723660,39724010,39724911,39726351	0.916667
transverse_colon_male_adult_37_years	chr10	46554691	46554705	46554691	-	High_confidence	3	5	8	0.599091	3.000000	chr10	46554368	46554805	LTR|LTR|MamRep1527	+	chr10	46549043	46555530	GPRIN2|ENST00000374317.1	-	46549043,46554584,46555374	46550742,46554695,46555530	1.000000
transverse_colon_male_adult_37_years	chr8	143281636	143281682	143281681	-	High_confidence	2	3	12	0.898636	3.277613	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.500000
transverse_colon_male_adult_37_years	chr16	2768524	2768539	2768524	+	High_confidence	4	4	9	0.673977	2.947703	chr16	2768449	2768579	LINE|CR1|Plat_L3	+	chr16	2768527	2771410	STRG.59879.8	+	2768527,2768996,2770603,2770857,2771120	2768599,2770465,2770717,2771049,2771410	0.555556
transverse_colon_male_adult_37_years	chr11	85810956	85810957	85810956	-	High_confidence	8	8	9	0.673977	3.000000	chr11	85810837	85810962	SINE|MIR|MIR3	-	chr11	85694274	85811129	SYTL2|ENST00000316356.8	-	85694274,85696182,85697978,85700514,85704857,85707428,85709330,85711112,85714412,85718789,85720857,85727895,85733938,85736500,85737574,85745636,85748271,85757624,85810953	85695340,85696388,85698078,85700593,85705028,85707531,85709500,85711232,85714507,85718843,85720959,85727967,85734742,85736615,85737656,85745772,85748423,85758114,85811129	0.888889
transverse_colon_male_adult_37_years	chr15	53116364	53116368	53116367	+	High_confidence	28	51	71	5.316929	5.464455	chr15	53116204	53116486	LTR|ERVL-MaLR|MSTD	+	chr15	53116364	53129698	LINC02490|ENST00000559915.1	+	53116364,53118218,53129238	53116458,53118265,53129698	0.816901
transverse_colon_male_adult_37_years	chr15	39609309	39609343	39609309	-	High_confidence	10	12	41	3.070339	4.785152	chr15	39608720	39609354	LINE|L1|L1MA7	+	chr15	39600471	39609321	STRG.57496.1	-	39600471,39609163	39600926,39609321	0.682927
transverse_colon_male_adult_37_years	chr17	28695267	28695302	28695285	+	High_confidence	2	2	8	0.599091	2.807355	chr17	28695199	28695350	SINE|MIR|MIR3	+	chr17	28695009	28696883	SUPT6H|ENST00000580471.1	+	28695009,28696843	28695547,28696883	0.875000
transverse_colon_male_adult_37_years	chr17	50737451	50737469	50737451	+	High_confidence	3	3	12	0.898636	3.418296	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50736634	50741673	LUC7L3|ENST00000513025.2	+	50736634,50740305,50741101,50741656	50737026,50740345,50741246,50741673	0.500000
transverse_colon_male_adult_37_years	chr17	82081606	82081607	82081606	-	RAMPAGE_only	11	11	15	1.123295	3.189898	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82080370	82083380	STRG.65604.1	-	82080370,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201	82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083380	1.000000
transverse_colon_male_adult_37_years	chr11	119110890	119110922	119110890	+	High_confidence	23	23	56	4.193634	4.743236	chr11	119110843	119110902	LINE|CR1|L3b	+	chr11	119111056	119117121	C2CD2L|ENST00000528586.2	+	119111056,119111262,119111520,119112327,119112481,119112699,119113610,119113854,119114079,119116024	119111168,119111374,119111629,119112392,119112609,119112874,119113712,119113988,119114365,119117121	0.910714
transverse_colon_male_adult_37_years	chr11	62600171	62600196	62600195	-	High_confidence	4	4	10	0.748863	2.725481	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.700000
transverse_colon_male_adult_37_years	chr7	158879614	158879615	158879614	+	High_confidence	5	5	8	0.599091	3.000000	chr7	158879307	158879633	DNA|TcMar-Tigger|MER2	-	chr7	158879779	158946189	WDR60|ENST00000444851.5	+	158879779,158884563,158887020,158891264,158901738,158902375,158905988,158911549,158912984,158914232,158918739,158923570,158926186,158926401,158926991,158930454,158934128,158934417,158941924,158945580	158879989,158884619,158887075,158891333,158901816,158902595,158906091,158911679,158913096,158914321,158918869,158923733,158926300,158926463,158927043,158930515,158934228,158934549,158942148,158946189	0.750000
transverse_colon_male_adult_37_years	chr7	105068496	105068524	105068496	+	RAMPAGE_only	2	4	9	0.673977	2.725481	chr7	105068454	105068624	SINE|Alu|AluJb	-	chr7	105066741	105106806	STRG.33595.1	+	105066741,105073618,105074642,105076042,105076962,105077302,105078845,105081687,105090008,105091215,105101424,105101885,105105438,105105858,105106521	105066807,105073677,105074815,105076081,105077193,105077433,105078963,105081797,105090273,105091314,105101589,105102194,105105693,105106003,105106806	0.555556
transverse_colon_male_adult_37_years	chr7	149551774	149551784	149551783	-	RAMPAGE_only	5	5	10	0.748863	2.947703	chr7	149551663	149551773	LTR|ERVL-MaLR|MLT1M	-	chr7	149549082	149624628	ZNF767P|ENST00000486492.5	-	149549082,149550867,149551654,149552800,149558607,149619923,149621045,149621259,149624541	149549374,149550946,149551826,149553013,149558839,149620037,149621172,149621559,149624628	0.800000
transverse_colon_male_adult_37_years	chr19	58312242	58312243	58312242	+	RAMPAGE_only	7	7	7	0.524204	2.807355	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	1.000000
transverse_colon_male_adult_37_years	chr17	64764500	64764554	64764500	-	RAMPAGE_only	2	2	13	0.973522	3.180833	chr17	64764423	64764603	SINE|Alu|AluSx1	+	chr17	64761911	64762710	BPTFP1|ENST00000579209.1	-	64761911,64762354	64762047,64762710	1.000000
transverse_colon_male_adult_37_years	chr16	30729514	30729566	30729565	+	RAMPAGE_only	11	11	32	2.396362	4.389365	chr16	30729600	30729733	LINE|CR1|L3	+	chr16	30722158	30736327	STRG.60922.1	+	30722158,30722962,30723583,30728965,30729369,30733279,30733601,30733893,30734495,30736199	30722286,30723229,30725082,30729231,30729572,30733449,30733798,30734008,30734615,30736327	0.968750
transverse_colon_male_adult_37_years	chr10	80176109	80176149	80176148	-	RAMPAGE_only	3	3	10	0.748863	2.641604	chr10	80176083	80176485	LINE|L1|L1ME4b	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	0.800000
transverse_colon_male_adult_37_years	chr1	110871200	110871210	110871200	+	RAMPAGE_only	3	3	7	0.524204	2.521641	chr1	110870731	110871665	LINE|L2|L2b	-	chr1	110873182	110892855	CD53|ENST00000471220.5	+	110873182,110891391,110892344	110873248,110891471,110892855	0.714286
transverse_colon_male_adult_37_years	chr5	88282837	88282838	88282837	+	RAMPAGE_only	6	6	7	0.524204	2.584963	chr5	88282583	88283084	DNA|TcMar-Tigger|Tigger7	-	chr5	88269046	88287656	TMEM161B-AS1|ENST00000506584.5	+	88269046,88270525,88282041,88282756,88283009,88285740,88287435	88269119,88270585,88282106,88282866,88283086,88285851,88287656	0.571429
transverse_colon_male_adult_37_years	chr1	155954932	155954938	155954937	-	RAMPAGE_only	2	3	7	0.524204	2.584963	chr1	155954717	155954897	LINE|L1|L1ME4b	-	chr1	155947366	155952721	ARHGEF2|ENST00000368315.8	-	155947366,155950298,155950828,155950873,155951482,155951740,155951918,155952115,155952627	155948015,155950482,155950872,155951272,155951533,155951776,155951986,155952235,155952721	0.714286
transverse_colon_male_adult_37_years	chr15	75347014	75347043	75347042	+	High_confidence	9	10	24	1.797272	4.349649	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.500000
transverse_colon_male_adult_37_years	chr12	7115158	7115173	7115172	+	High_confidence	10	10	19	1.422840	3.681881	chr12	7114990	7115194	LINE|L2|L2b	+	chr12	7115444	7127630	STRG.49389.1	+	7115444,7118898,7120505,7127587	7118677,7118944,7120625,7127630	0.684211
transverse_colon_male_adult_37_years	chrY	3002985	3002990	3002989	+	High_confidence	8	9	19	1.422840	3.905765	chrY	3002992	3005218	LTR|ERV1|HERV3-int	+	chrY	3002995	3102272	LINC00278|NR_046502.1	+	3002995,3079283,3096994,3102084	3003217,3079341,3097056,3102272	0.789474
transverse_colon_male_adult_37_years	chr16	23354101	23354120	23354119	+	RAMPAGE_only	4	4	9	0.673977	2.750000	chr16	23354161	23354295	SINE|MIR|MIR	+	chr16	23348794	23380803	STRG.60523.2	+	23348794,23352800,23354227,23367855,23371298,23371775,23375737,23377164,23377328,23378705,23380093,23380420	23348910,23353074,23355489,23367959,23371462,23371883,23375855,23377240,23377386,23378767,23380169,23380803	0.777778
transverse_colon_male_adult_37_years	chr12	109053937	109053952	109053947	-	High_confidence	2	2	8	0.599091	2.807355	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.625000
transverse_colon_male_adult_37_years	chr19	35115822	35115923	35115822	+	High_confidence	65	73	530	39.689749	7.317415	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.749057
transverse_colon_male_adult_37_years	chr1	12356414	12356415	12356414	+	RAMPAGE_only	6	6	8	0.599091	2.750000	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12299280	12373848	VPS13D|ENST00000460333.5	+	12299280,12304505,12308430,12311453,12311812,12314114,12318071,12319496,12321808,12322535,12323705,12327647,12329828,12333225,12335704,12341779,12342898,12345373,12346604,12348822,12353973,12355898,12356397,12358458,12362719,12363071,12368467,12369466,12373749	12299384,12304728,12308641,12311625,12311925,12314327,12318337,12319630,12321964,12322746,12323780,12327854,12329918,12333366,12335827,12341885,12343051,12345509,12346652,12349374,12354221,12356090,12356524,12358601,12362850,12363247,12368591,12369702,12373848	0.500000
transverse_colon_male_adult_37_years	chr5	140655953	140655987	140655986	+	RAMPAGE_only	6	8	31	2.321476	4.413716	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.967742
transverse_colon_male_adult_37_years	chr2	120100752	120100767	120100752	+	RAMPAGE_only	2	2	6	0.449318	2.584963	chr2	120100735	120100772	LINE|CR1|L3b	-	chr2	120013210	120105115	EPB41L5|ENST00000443124.5	+	120013210,120019076,120042005,120073177,120074099,120075475,120075700,120076970,120077228,120078492,120087170,120090346,120091554,120093248,120100243,120100698,120104059	120013681,120019264,120042110,120073220,120074178,120075520,120075753,120077091,120077316,120078581,120087240,120090516,120091661,120093276,120100286,120100814,120105115	0.833333
transverse_colon_male_adult_37_years	chr11	93499289	93499304	93499303	-	High_confidence	12	12	29	2.171703	3.672692	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	0.931034
transverse_colon_male_adult_37_years	chr19	17197856	17197857	17197856	+	High_confidence	9	9	10	0.748863	2.641604	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	0.900000
transverse_colon_male_adult_37_years	chr8	102275542	102275571	102275542	-	RAMPAGE_only	3	3	12	0.898636	3.277613	chr8	102275368	102275493	LINE|L1|L1ME3E	-	chr8	102271193	102276820	UBR5|ENST00000521566.1	-	102271193,102272528,102275520,102275707,102276773	102271245,102272772,102275619,102275828,102276820	0.833333
transverse_colon_male_adult_37_years	chr11	107441569	107441593	107441592	-	RAMPAGE_only	3	3	8	0.599091	2.521641	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	0.875000
transverse_colon_male_adult_37_years	chr19	13761485	13761505	13761485	+	High_confidence	4	4	8	0.599091	2.500000	chr19	13761456	13761598	LINE|L2|L2a	+	chr19	13761390	13762973	CCDC130|ENST00000589669.1	+	13761390,13762298,13762589	13761568,13762437,13762973	1.000000
transverse_colon_male_adult_37_years	chr4	149901234	149901249	149901234	-	High_confidence	12	12	28	2.096817	4.469670	chr4	149901183	149901298	SINE|MIR|MIRb	+	chr4	149900312	149901221	STRG.21692.2	-	149900312,149901192	149900867,149901221	0.607143
transverse_colon_male_adult_37_years	chr17	56904485	56904542	56904518	-	High_confidence	8	8	20	1.497726	3.681881	chr17	56904513	56905129	LINE|L1|L1ME3C	+	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.700000
transverse_colon_male_adult_37_years	chr16	66973410	66973650	66973462	+	RAMPAGE_only	15	15	142	10.633857	6.281548	chr16	66973207	66973539	LINE|L2|L2b	+	chr16	66967474	66975148	CES3|ENST00000543856.1	+	66967474,66969678,66971171,66972355,66972667,66972853	66967899,66969759,66971319,66972505,66972746,66975148	1.000000
transverse_colon_male_adult_37_years	chrX	19349963	19349981	19349963	+	High_confidence	2	2	8	0.599091	2.521641	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19349315	19359832	STRG.73363.1	+	19349315,19349936,19351280,19353081,19355348,19355685,19357651,19358915,19359488	19349371,19350110,19351407,19353173,19355504,19355757,19357719,19359024,19359832	0.500000
transverse_colon_male_adult_37_years	chr22	50582177	50582181	50582180	-	High_confidence	6	6	10	0.748863	2.947703	chr22	50582144	50582195	SINE|MIR|MIRb	+	chr22	50581606	50582420	CHKB|ENST00000465842.1	-	50581606,50582248	50581862,50582420	0.500000
transverse_colon_male_adult_37_years	chr3	134485431	134485448	134485431	-	High_confidence	2	2	11	0.823750	2.921928	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.545455
transverse_colon_male_adult_37_years	chr9	129010473	129010515	129010514	-	RAMPAGE_only	3	3	8	0.599091	2.807355	chr9	129010444	129010507	LINE|L2|L2a	-	chr9	129008136	129013950	SH3GLB2|ENST00000461811.5	-	129008136,129009105,129009770,129010119	129008791,129009346,129009871,129013950	0.875000
transverse_colon_male_adult_37_years	chr19	10379686	10379687	10379686	-	High_confidence	12	12	15	1.123295	3.240224	chr19	10379599	10379809	SINE|MIR|MIRb	+	chr19	10354537	10379732	STRG.67472.1	-	10354537,10356567,10357763,10358002,10359174,10361510,10361769,10362077,10362263,10362548,10364613,10364850,10365516,10366416,10368054,10368294,10378213,10379614	10354609,10356718,10357918,10358138,10359302,10361598,10361955,10362181,10362456,10362657,10364771,10365048,10365898,10366580,10368202,10368418,10378426,10379732	1.000000
transverse_colon_male_adult_37_years	chr3	37988098	37988099	37988098	+	High_confidence	12	12	14	1.048408	2.985228	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.785714
transverse_colon_male_adult_37_years	chr11	71473626	71473672	71473671	+	High_confidence	11	12	26	1.947044	3.902175	chr11	71473716	71473794	LINE|L2|L2b	+	chr11	71474394	71482986	NADSYN1|ENST00000527852.6	+	71474394,71477344,71478394,71480754,71481355,71481922,71482848	71474526,71477438,71478469,71480879,71481404,71482025,71482986	0.500000
transverse_colon_male_adult_37_years	chr19	55094777	55094851	55094818	-	High_confidence	5	5	24	1.797272	4.251629	chr19	55094806	55095145	LINE|L2|L2a	-	chr19	55090913	55094796	PPP1R12C|ENST00000591938.5	-	55090913,55091649,55091858,55092221,55092441,55092621,55093185,55094344,55094660	55091558,55091700,55091909,55092326,55092544,55092653,55093233,55094435,55094796	0.791667
transverse_colon_male_adult_37_years	chr2	38083041	38083072	38083053	+	High_confidence	5	5	17	1.273067	3.577820	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.705882
transverse_colon_male_adult_37_years	chr20	9333276	9333330	9333276	+	High_confidence	290	297	814	60.957464	6.633033	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9333454	9362967	STRG.69718.1	+	9333454,9337125,9338007,9338893,9362895	9333570,9337206,9338067,9339037,9362967	0.812039
transverse_colon_male_adult_37_years	chr5	141931148	141931190	141931186	+	High_confidence	7	7	26	1.947044	3.854286	chr5	141930908	141931644	LINE|L2|L2a	-	chr5	141931218	141933882	DELE1|ENST00000506775.1	+	141931218,141933258	141931280,141933882	0.500000
transverse_colon_male_adult_37_years	chr3	108295736	108295737	108295736	+	High_confidence	17	17	23	1.722385	3.969002	chr3	108295771	108295812	DNA|hAT-Ac|OldhAT1	+	chr3	108296489	108378285	HHLA2|NM_001282558.1	+	108296489,108310654,108328269,108351787,108353426,108355114,108357843,108362341,108376492,108377257	108296599,108310741,108328347,108351877,108353780,108355381,108358161,108362446,108376557,108378285	0.695652
transverse_colon_male_adult_37_years	chr11	69479801	69479841	69479801	-	High_confidence	2	3	12	0.898636	3.277613	chr11	69479627	69479839	LINE|L2|L2c	+	chr11	69477132	69479940	AP000439.2|ENST00000542064.1	-	69477132,69479695	69477613,69479940	0.666667
transverse_colon_male_adult_37_years	chr6	107044206	107044213	107044212	+	RAMPAGE_only	10	10	25	1.872158	3.294664	chr6	107044140	107044239	LINE|L1|L1PB4	-	chr6	107028568	107051335	C6orf203|ENST00000625458.1	+	107028568,107030024,107039748,107044259,107051056	107028797,107030107,107040230,107044332,107051335	0.920000
transverse_colon_male_adult_37_years	chr19	55056796	55056806	55056805	-	RAMPAGE_only	4	4	8	0.599091	3.000000	chr19	55056791	55057338	LINE|L1|L1MB7	+	chr19	55048656	55059174	RDH13|ENST00000589605.5	-	55048656,55050699,55056652,55059156	55048763,55051002,55056808,55059174	0.625000
transverse_colon_male_adult_37_years	chr4	142566075	142566076	142566075	+	High_confidence	6	8	9	0.673977	3.000000	chr4	142566070	142566604	LINE|L2|L2c	-	chr4	142566018	142660950	AC139720.1|ENST00000509497.1	+	142566018,142583451,142660782	142566190,142583623,142660950	0.666667
transverse_colon_male_adult_37_years	chr4	81154187	81154222	81154221	-	High_confidence	3	3	11	0.823750	3.121928	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.909091
transverse_colon_male_adult_37_years	chr11	68180133	68180142	68180141	-	High_confidence	4	4	9	0.673977	2.750000	chr11	68180123	68180214	SINE|MIR|MIRc	+	chr11	68171118	68180165	KMT5B|ENST00000323599.10	-	68171118,68171231,68171542,68173803,68174087,68175017,68180131	68171151,68171251,68171709,68173913,68174210,68175183,68180165	0.888889
transverse_colon_male_adult_37_years	chr9	74847994	74848003	74848002	-	RAMPAGE_only	9	9	19	1.422840	3.947703	chr9	74847872	74848586	DNA|TcMar-Tigger|MER44C	-	chr9	74722494	74887347	TRPM6|ENST00000361255.7	-	74722494,74728238,74732684,74738406,74739366,74739722,74742560,74744094,74747888,74750663,74752276,74755352,74761695,74761998,74771702,74775882,74782361,74782678,74785873,74788613,74792623,74796740,74800253,74801897,74803793,74808033,74810814,74812298,74816668,74816891,74820303,74821668,74827777,74833997,74840023,74842165,74855526,74858668,74887230	74724746,74728345,74732736,74738612,74739449,74740009,74742626,74744145,74747914,74750722,74752368,74755473,74761808,74763134,74771835,74776076,74782476,74782853,74786125,74788742,74792770,74796893,74800482,74802175,74803886,74808174,74810868,74812433,74816769,74816964,74820427,74821837,74827949,74834122,74840237,74842343,74855565,74858748,74887347	0.947368
transverse_colon_male_adult_37_years	chr11	114650740	114650749	114650740	+	High_confidence	10	11	20	1.497726	3.784184	chr11	114650014	114651054	LINE|L1|L1MCc	+	chr11	114650932	114651474	STRG.48454.1	+	114650932,114651241	114651045,114651474	0.600000
transverse_colon_male_adult_37_years	chr6	11728538	11728547	11728546	-	High_confidence	7	7	18	1.347954	3.572431	chr6	11728359	11728734	LINE|L2|L2b	+	chr6	11713953	11728557	ADTRP|ENST00000513651.5	-	11713953,11723348,11728326	11714512,11723500,11728557	0.722222
transverse_colon_male_adult_37_years	chr16	29834372	29834435	29834418	+	High_confidence	7	8	22	1.647499	3.192418	chr16	29834396	29834653	SINE|Alu|AluJr	+	chr16	29834185	29840267	MVP|ENST00000570061.1	+	29834185,29835703,29836721,29840177	29834437,29835798,29836958,29840267	0.909091
transverse_colon_male_adult_37_years	chr11	114644043	114644377	114644373	-	RAMPAGE_only	42	44	318	23.813849	6.564301	chr11	114642325	114644484	LINE|L1|L1PA7	-	chr11	114640648	114651541	STRG.48457.5	-	114640648,114648240,114651162	114644382,114648345,114651541	0.990566
transverse_colon_male_adult_37_years	chr16	67183456	67183467	67183456	-	High_confidence	5	5	12	0.898636	3.188722	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	1.000000
transverse_colon_male_adult_37_years	chr18	46087018	46087043	46087042	-	High_confidence	8	8	20	1.497726	3.441446	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	1.000000
transverse_colon_male_adult_37_years	chr11	112150608	112150622	112150621	-	High_confidence	9	9	21	1.572613	3.975418	chr11	112150354	112150650	LINE|L2|L2c	+	chr11	112143256	112151073	IL18|ENST00000525547.5	-	112143256,112148602,112150071	112143817,112148736,112151073	1.000000
transverse_colon_male_adult_37_years	chr11	65437384	65437585	65437584	+	RAMPAGE_only	29	29	227	16.999194	4.898516	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.995595
transverse_colon_male_adult_37_years	chr19	35135751	35135777	35135751	-	High_confidence	3	3	14	1.048408	3.546594	chr19	35135727	35135959	SINE|MIR|MIR	-	chr19	35135396	35135664	STRG.68338.1	-	35135396	35135664	0.714286
transverse_colon_male_adult_37_years	chr5	134613239	134613240	134613239	-	High_confidence	4	4	7	0.524204	2.807355	chr5	134612808	134613396	LTR|ERV1|LTR10C	+	chr5	134606986	134613137	SAR1B|ENST00000509730.5	-	134606986,134608371,134609570,134612690,134613013	134607066,134608503,134609674,134612756,134613137	0.714286
transverse_colon_male_adult_37_years	chr2	219222038	219222083	219222038	-	High_confidence	2	2	7	0.524204	2.521641	chr2	219221951	219222030	SINE|MIR|MIRb	-	chr2	219220208	219222248	ATG9A|ENST00000475339.1	-	219220208,219220746,219221079,219222049	219220452,219220892,219221302,219222248	0.714286
transverse_colon_male_adult_37_years	chr1	26284538	26284576	26284538	-	RAMPAGE_only	8	8	21	1.572613	4.011365	chr1	26284514	26284630	SINE|MIR|MIR3	-	chr1	26282738	26286017	STRG.1070.1	-	26282738,26282863,26284141,26284361,26285822	26282789,26282937,26284245,26285541,26286017	0.952381
transverse_colon_male_adult_37_years	chr19	49086520	49086559	49086520	+	High_confidence	106	113	354	26.509757	5.631493	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.971751
transverse_colon_male_adult_37_years	chr22	20977493	20977494	20977493	+	High_confidence	8	8	11	0.823750	3.321928	chr22	20977467	20977523	LINE|L2|L2b	-	chr22	20976872	20981355	AIFM3|ENST00000486003.1	+	20976872,20977887,20979270,20979626	20977776,20978005,20979369,20981355	0.909091
transverse_colon_male_adult_37_years	chr5	103129650	103129651	103129650	+	High_confidence	9	9	11	0.823750	2.845351	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	1.000000
transverse_colon_male_adult_37_years	chr19	16066963	16066970	16066969	+	High_confidence	4	4	9	0.673977	3.169925	chr19	16066937	16067003	LINE|L2|L2c	-	chr19	16067020	16076141	TPM4|ENST00000589897.1	+	16067020,16067533,16076046	16067306,16067738,16076141	1.000000
transverse_colon_male_adult_37_years	chr4	75928909	75928952	75928951	-	High_confidence	4	4	18	1.347954	2.984234	chr4	75928784	75929091	SINE|Alu|AluY	-	chr4	75928174	75928973	STRG.20233.1	-	75928174	75928973	0.888889
transverse_colon_male_adult_37_years	chr1	43537671	43537706	43537705	+	High_confidence	6	7	26	1.947044	4.084963	chr1	43537442	43537857	LINE|L2|L2b	-	chr1	43538197	43580078	PTPRF|ENST00000372405.1	+	43538197,43545030,43553491,43553799,43569589,43578809	43538277,43545166,43553637,43553941,43569778,43580078	0.576923
transverse_colon_male_adult_37_years	chr16	15798664	15798670	15798664	-	RAMPAGE_only	52	56	107	8.012836	5.863258	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.887850
transverse_colon_male_adult_37_years	chr7	128622497	128622529	128622528	+	RAMPAGE_only	14	14	36	2.695907	4.124084	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128577908	128626473	STRG.34094.2	+	128577908,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128578033,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.861111
transverse_colon_male_adult_37_years	chr22	23705502	23705537	23705502	-	RAMPAGE_only	3	3	15	1.123295	3.906891	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23695146	23698001	STRG.72107.10	-	23695146,23697882	23695517,23698001	1.000000
transverse_colon_male_adult_37_years	chr11	13708076	13708077	13708076	+	RAMPAGE_only	5	6	8	0.599091	3.000000	chr11	13708123	13708382	SINE|Alu|AluSx3	+	chr11	13710723	13715843	FAR1|ENST00000527202.1	+	13710723,13711763,13711927,13712965,13714508,13715800	13710870,13711808,13712055,13713033,13714680,13715843	0.875000
transverse_colon_male_adult_37_years	chr3	37987981	37987994	37987993	+	High_confidence	87	111	370	27.707938	6.457507	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.859459
transverse_colon_male_adult_37_years	chr7	36661138	36661164	36661138	-	High_confidence	6	6	21	1.572613	3.984184	chr7	36661075	36661436	LTR|ERVL-MaLR|MLT1O	+	chr7	36540322	36661300	STRG.31788.1	-	36540322,36548611,36549438,36576573,36594338,36616379,36618296,36620780,36621709,36623189,36632035,36637850,36659165,36661042	36540491,36548686,36549475,36576656,36594430,36616474,36618345,36620829,36621780,36623250,36632106,36637910,36659265,36661300	0.904762
transverse_colon_male_adult_37_years	chr20	51608762	51608763	51608762	-	RAMPAGE_only	6	6	6	0.449318	2.584963	chr20	51608712	51608922	LINE|L2|L2a	-	chr20	51599771	51619180	STRG.70903.3	-	51599771,51604816,51608517,51610100,51613676,51617489,51618661,51618953	51601347,51605020,51608626,51610165,51613832,51617554,51618806,51619180	0.666667
transverse_colon_male_adult_37_years	chr5	150199011	150199012	150199011	+	RAMPAGE_only	10	10	14	1.048408	3.378783	chr5	150198982	150199037	SINE|Alu|AluJr	-	chr5	150196342	150201225	STRG.26082.5	+	150196342,150198942,150199227,150201088	150197276,150199048,150199366,150201225	0.928571
transverse_colon_male_adult_37_years	chr19	10400658	10400675	10400658	-	RAMPAGE_only	4	4	9	0.673977	2.725481	chr19	10400416	10400718	SINE|Alu|AluJb	+	chr19	10395022	10403511	CDC37|ENST00000588869.1	-	10395022,10395227,10395927,10400574,10403377	10395143,10395543,10396203,10400693,10403511	1.000000
transverse_colon_male_adult_37_years	chr2	201458835	201458864	201458863	+	RAMPAGE_only	6	6	16	1.198181	3.024397	chr2	201458879	201459004	SINE|Alu|FLAM_C	+	chr2	201451795	201480846	STRADB|ENST00000392249.6	+	201451795,201454745,201458783,201469952,201472954,201474646,201475618,201477618,201478086,201478356,201479488,201480007	201451938,201454852,201458864,201470052,201473076,201474755,201475742,201477790,201478191,201478601,201479531,201480846	1.000000
transverse_colon_male_adult_37_years	chr12	7502517	7502550	7502519	-	High_confidence	5	9	31	2.321476	4.573557	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.967742
transverse_colon_male_adult_37_years	chr10	110884978	110885005	110884978	+	High_confidence	9	11	22	1.647499	3.168233	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110884770	110894179	PDCD4|ENST00000481353.5	+	110884770,110887664,110889532,110890555,110894090	110885366,110887886,110889630,110890670,110894179	1.000000
transverse_colon_male_adult_37_years	chr4	168317944	168317998	168317944	-	High_confidence	1	1	8	0.599091	2.521641	chr4	168317795	168318076	LTR|ERVL-MaLR|MLT1E1A	+	chr4	168283447	168318723	STRG.22088.1	-	168283447,168284819,168285392,168287047,168288173,168291747,168293786,168302299,168306378,168308005,168310997,168311255,168318621	168283606,168284935,168285498,168287203,168288315,168291906,168293945,168302416,168306720,168308195,168311067,168311365,168318723	0.750000
transverse_colon_male_adult_37_years	chr16	30445873	30445877	30445873	-	High_confidence	52	66	116	8.686813	5.883018	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.965517
transverse_colon_male_adult_37_years	chr19	11196100	11196137	11196131	-	High_confidence	7	7	36	2.695907	4.159799	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.972222
transverse_colon_male_adult_37_years	chr16	2769656	2769880	2769820	+	High_confidence	49	55	375	28.082370	6.057782	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2770934	SRRM2|ENST00000574866.1	+	2769894,2770351,2770603,2770857	2770227,2770465,2770717,2770934	0.866667
transverse_colon_male_adult_37_years	chr1	16635057	16635080	16635057	-	RAMPAGE_only	2	3	8	0.599091	2.521641	chr1	16635030	16635337	SINE|Alu|AluSx	-	chr1	16625374	16644672	CROCCP2|ENST00000635081.1	-	16625374,16626352,16627144,16628467,16630889,16631529,16632274,16633094,16643027,16644645	16626005,16626499,16627289,16628650,16631109,16631613,16632371,16633346,16643145,16644672	0.500000
transverse_colon_male_adult_37_years	chr16	29760735	29760779	29760778	+	High_confidence	2	2	6	0.449318	2.584963	chr16	29760474	29761018	LTR|ERVL-MaLR|MLT1G1	+	chr16	29760800	29780425	STRG.60862.2	+	29760800,29779259,29779504,29780103	29760949,29779321,29779637,29780425	0.833333
transverse_colon_male_adult_37_years	chr12	72432463	72432487	72432481	+	High_confidence	20	45	91	6.814655	5.271892	chr12	72432166	72432618	LTR|ERVK|LTR22A	-	chr12	72432503	72562192	STRG.51565.1	+	72432503,72469757,72473066,72499497,72542290,72562164	72432566,72469912,72473180,72499635,72542356,72562192	0.769231
transverse_colon_male_adult_37_years	chr22	42644562	42644634	42644615	-	High_confidence	3	3	15	1.123295	3.182006	chr22	42644357	42644632	LINE|L2|L2c	+	chr22	42617839	42644634	CYB5R3|NM_001171660.1	-	42617839,42623788,42627303,42627604,42628151,42630881,42631377,42636714,42644389	42619945,42623888,42627389,42627688,42628281,42630988,42631450,42636846,42644634	0.933333
transverse_colon_male_adult_37_years	chr13	30376953	30376977	30376953	-	RAMPAGE_only	2	2	9	0.673977	2.750000	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30340265	30373914	LINC00426|NR_024464.2	-	30340265,30363160,30367600,30372284,30373782	30341468,30363226,30367717,30372374,30373914	0.555556
transverse_colon_male_adult_37_years	chr21	41480685	41480701	41480700	-	High_confidence	10	12	16	1.198181	3.506891	chr21	41480630	41480937	SINE|Alu|AluSx1	-	chr21	41467765	41481612	STRG.71718.7	-	41467765,41470647,41471805,41473324,41476576,41479171,41480475	41468538,41470743,41471981,41473496,41476620,41479282,41481612	0.625000
transverse_colon_male_adult_37_years	chr7	134527669	134527687	134527669	+	High_confidence	2	2	6	0.449318	2.584963	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527619	134537087	AKR1B10|ENST00000475559.1	+	134527619,134530642,134531907,134533003,134535616,134536708,134537050	134527977,134530810,134532024,134533081,134535663,134536772,134537087	1.000000
transverse_colon_male_adult_37_years	chr15	76576920	76576996	76576992	-	High_confidence	3	3	27	2.021931	4.132944	chr15	76576480	76577164	LINE|L1|L1MA3	+	chr15	76471261	76576985	SCAPER|ENST00000569784.1	-	76471261,76504858,76567269,76574157,76576858	76471335,76504974,76567405,76574284,76576985	0.814815
transverse_colon_male_adult_37_years	chr11	65431724	65431768	65431761	+	RAMPAGE_only	6	6	21	1.572613	3.784184	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.952381
transverse_colon_male_adult_37_years	chr4	851063	851140	851139	-	High_confidence	26	26	51	3.819202	4.149275	chr4	851102	851393	SINE|Alu|AluJb	-	chr4	849275	851673	GAK|ENST00000502799.1	-	849275,849891	849774,851673	0.980392
transverse_colon_male_adult_37_years	chr6	43502209	43502210	43502209	+	High_confidence	9	9	10	0.748863	2.947703	chr6	43502114	43502254	SINE|MIR|MIR3	-	chr6	43502219	43504917	STRG.28313.1	+	43502219,43503400,43503622,43504760	43502349,43503508,43503706,43504917	0.600000
transverse_colon_male_adult_37_years	chr5	131316083	131316089	131316083	+	RAMPAGE_only	4	4	10	0.748863	2.947703	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131264099	131394667	CDC42SE2|ENST00000505065.1	+	131264099,131315975,131359208,131385542,131390992	131264166,131316144,131359547,131385644,131394667	0.900000
transverse_colon_male_adult_37_years	chr22	46578331	46578332	46578331	+	RAMPAGE_only	20	25	28	2.096817	4.351823	chr22	46578347	46578471	SINE|MIR|MIRc	+	chr22	46577149	46679683	STRG.72950.1	+	46577149,46626750,46637839,46658186,46661380,46663039,46663837,46664025,46665614,46666824,46668095,46668688,46668798,46672842,46673669,46674656,46675467,46676599,46677146	46577290,46626961,46637960,46658307,46661442,46663172,46663863,46664117,46665706,46666873,46668167,46668732,46668908,46672997,46673814,46674750,46675552,46676668,46679683	0.892857
transverse_colon_male_adult_37_years	chr8	133250622	133250623	133250622	-	RAMPAGE_only	18	18	23	1.722385	4.262692	chr8	133250581	133250664	SINE|MIR|MIRb	+	chr8	133246626	133254882	NDRG1|ENST00000521664.1	-	133246626,133247874,133248714,133250439,133254538	133246663,133247926,133248771,133250543,133254882	0.739130
transverse_colon_male_adult_37_years	chr14	53217892	53217907	53217896	+	High_confidence	5	5	10	0.748863	2.641604	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217890	53369501	AL365295.1|ENST00000435322.1	+	53217890,53304807,53318030,53369454	53218055,53305053,53318138,53369501	0.600000
transverse_colon_male_adult_37_years	chr12	132862333	132862334	132862333	-	High_confidence	12	12	13	0.973522	2.855389	chr12	132862311	132862594	SINE|Alu|AluJo	+	chr12	132859078	132861904	CHFR|ENST00000535897.1	-	132859078,132861466	132859227,132861904	0.923077
transverse_colon_male_adult_37_years	chr1	184590798	184590803	184590802	+	RAMPAGE_only	4	4	8	0.599091	2.750000	chr1	184590844	184591183	DNA|TcMar-Tigger|MER2B	+	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	1.000000
transverse_colon_male_adult_37_years	chr12	6356327	6356374	6356373	-	High_confidence	16	18	52	3.894089	5.030173	chr12	6356219	6356436	LINE|L2|L2b	+	chr12	6355391	6356293	SCNN1A|ENST00000536087.1	-	6355391,6355776	6355435,6356293	0.942308
transverse_colon_male_adult_37_years	chr10	16794073	16794096	16794073	-	RAMPAGE_only	7	7	16	1.198181	3.280639	chr10	16793814	16794303	LTR|ERVL|MLT2B2	+	chr10	16590610	16817383	RSU1|ENST00000377921.7	-	16590610,16695022,16752538,16752917,16754870,16764389,16782033,16816972	16593496,16695155,16752653,16753000,16754989,16764510,16782084,16817383	1.000000
transverse_colon_male_adult_37_years	chr4	9641214	9641275	9641231	+	RAMPAGE_only	3	3	14	1.048408	3.521641	chr4	9639324	9642266	LTR|ERV1|HERVH-int	+	chr4	9532428	9641530	STRG.19183.1	+	9532428,9641070	9532647,9641530	0.571429
transverse_colon_male_adult_37_years	chr9	113375464	113375535	113375534	-	High_confidence	10	10	42	3.145225	4.772186	chr9	113375358	113375529	SINE|MIR|MIR3	-	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	0.928571
transverse_colon_male_adult_37_years	chrX	66172263	66172282	66172281	+	RAMPAGE_only	16	16	42	3.145225	4.772186	chrX	66172197	66172316	LINE|CR1|L3b	-	chrX	66170545	66208246	HEPH|ENST00000425114.1	+	66170545,66172354,66173588,66188358,66189683,66192129,66193501,66195097,66197811,66198877,66200539,66203363,66207194,66208114	66170737,66172599,66173801,66188541,66189938,66192298,66193638,66195229,66197894,66199028,66200752,66203577,66207334,66208246	0.904762
transverse_colon_male_adult_37_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	16	16	16	1.198181	3.327820	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
transverse_colon_male_adult_37_years	chr19	40786747	40786759	40786747	+	RAMPAGE_only	6	6	12	0.898636	2.855389	chr19	40786688	40786750	LINE|CR1|L3	-	chr19	40785532	40796938	RAB4B|ENST00000598430.1	+	40785532,40786847,40796569	40786760,40786978,40796938	0.916667
transverse_colon_male_adult_37_years	chr6	79631273	79631363	79631302	+	High_confidence	70	70	291	21.791919	6.479524	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.927835
transverse_colon_male_adult_37_years	chr14	46597482	46597490	46597482	-	High_confidence	2	2	8	0.599091	2.521641	chr14	46596873	46598012	LINE|L2|L2a	+	chr14	46597232	46597537	STRG.55218.1	-	46597232	46597537	0.625000
transverse_colon_male_adult_37_years	chr2	159382560	159382573	159382572	-	High_confidence	4	4	8	0.599091	2.750000	chr2	159382314	159382523	SINE|MIR|MIRb	-	chr2	159347598	159382769	STRG.10994.1	-	159347598,159348677,159349006,159349707,159373044,159374690,159382558	159347646,159348833,159349280,159350357,159373189,159374753,159382769	1.000000
transverse_colon_male_adult_37_years	chr11	65429305	65429369	65429305	+	RAMPAGE_only	59	59	159	11.906925	5.110431	chr11	65428987	65429477	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.987421
transverse_colon_male_adult_37_years	chr9	129042477	129042507	129042506	+	RAMPAGE_only	6	6	18	1.347954	4.169925	chr9	129042512	129042674	SINE|MIR|MIRc	+	chr9	129036973	129072072	FAM73B|NM_032809.2	+	129036973,129040451,129042303,129048426,129049380,129049826,129059153,129060549,129061230,129063243,129063544,129067772,129068197,129069075,129069848,129070246	129037016,129040690,129042514,129048539,129049498,129049963,129059271,129060650,129061346,129063316,129063631,129067871,129068332,129069129,129069965,129072072	1.000000
transverse_colon_male_adult_37_years	chr1	206929142	206929358	206929357	-	RAMPAGE_only	385	398	1787	133.821852	6.411107	chr1	206929265	206929570	SINE|Alu|AluY	+	chr1	206928517	206946466	PIGR|ENST00000356495.4	-	206928517,206931496,206931670,206932455,206932985,206934419,206935485,206937094,206939118,206940488,206946335	206930413,206931555,206931802,206932577,206933166,206934746,206935818,206937751,206939463,206940584,206946466	0.994404
transverse_colon_male_adult_37_years	chr7	134527596	134527597	134527596	+	High_confidence	122	124	136	10.184539	6.192253	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.941176
transverse_colon_male_adult_37_years	chr1	202551709	202551710	202551709	+	High_confidence	7	7	10	0.748863	2.725481	chr1	202551661	202552117	LTR|ERVL-MaLR|MLT1E2	+	chr1	202551651	202552057	STRG.6052.1	+	202551651	202552057	0.800000
transverse_colon_male_adult_37_years	chr20	25296857	25296939	25296873	+	RAMPAGE_only	23	23	77	5.766247	5.144418	chr20	25296856	25297216	LTR|ERV1|MER57A-int	+	chr20	25248069	25298012	PYGB|NM_002862.3	+	25248069,25259236,25269128,25271382,25274591,25276645,25277243,25278318,25279056,25280265,25280948,25282032,25283175,25284103,25288424,25290480,25292405,25294157,25295603,25296369	25248421,25259338,25269207,25271486,25274723,25276757,25277326,25278462,25279149,25280412,25281112,25282147,25283277,25284251,25288483,25290622,25292613,25294292,25295670,25298012	1.000000
transverse_colon_male_adult_37_years	chr16	67183332	67183333	67183332	-	High_confidence	7	7	10	0.748863	3.121928	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.900000
transverse_colon_male_adult_37_years	chr1	21111368	21111374	21111368	-	High_confidence	4	4	12	0.898636	3.277613	chr1	21111257	21111427	SINE|MIR|MIRb	+	chr1	20806291	21111383	EIF4G3|NM_003760.4	-	20806291,20810737,20813157,20817391,20825099,20827616,20829146,20840855,20849414,20851257,20853559,20854977,20857402,20860384,20862227,20864475,20865115,20879322,20886200,20893516,20895367,20899696,20904882,20941490,20950002,20969473,20973001,20980333,20981047,21002712,21050865,21111322	20807500,20810884,20813239,20817538,20825198,20827698,20829272,20841028,20849530,20851478,20853677,20855071,20857497,20860517,20862332,20864712,20865262,20879520,20886371,20893636,20895501,20899943,20904971,20942330,20950111,20969596,20973099,20980448,20981227,21002808,21050994,21111383	0.750000
transverse_colon_male_adult_37_years	chr3	124938154	124938155	124938154	-	RAMPAGE_only	14	14	14	1.048408	3.521641	chr3	124938000	124938162	LTR|ERVL|LTR79	+	chr3	124905441	124934751	MUC13|ENST00000616727.4	-	124905441,124908146,124910414,124912103,124913110,124913561,124916316,124920233,124922196,124923526,124927531,124934660	124906742,124908348,124910499,124912141,124913240,124913681,124916480,124920289,124922303,124923649,124927993,124934751	1.000000
transverse_colon_male_adult_37_years	chr17	56904401	56904446	56904445	-	High_confidence	8	10	28	2.096817	4.209867	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56898960	56904488	TRIM25|ENST00000570749.5	-	56898960,56901418,56904254	56899180,56901578,56904488	0.714286
transverse_colon_male_adult_37_years	chr10	4678115	4678147	4678130	-	High_confidence	3	3	12	0.898636	3.095795	chr10	4678128	4678205	SINE|MIR|MIR3	-	chr10	4651160	4678132	MANCR|ENST00000449712.1	-	4651160,4656702,4657600,4659452,4678048	4651203,4656925,4657725,4659680,4678132	0.500000
transverse_colon_male_adult_37_years	chr16	84454680	84454696	84454695	+	RAMPAGE_only	4	4	9	0.673977	2.500000	chr16	84454520	84454746	SINE|MIR|MIRb	-	chr16	84453235	84463730	ATP2C2|ENST00000567892.5	+	84453235,84454817,84459119,84460653,84461713,84461987,84463613	84453371,84454984,84459188,84460801,84461812,84462129,84463730	0.777778
transverse_colon_male_adult_37_years	chr3	135965658	135965758	135965723	+	High_confidence	7	11	68	5.092270	5.237452	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.852941
transverse_colon_male_adult_37_years	chr19	49867884	49867900	49867884	-	High_confidence	9	12	23	1.722385	4.262692	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49861203	49867886	PNKP|ENST00000322344.7	-	49861203,49861448,49861607,49861771,49862043,49862184,49862370,49862537,49862689,49863688,49863963,49864178,49864323,49865126,49866398,49867053,49867468	49861365,49861510,49861695,49861881,49862105,49862281,49862463,49862608,49862738,49863760,49864071,49864236,49864403,49865426,49866445,49867217,49867886	0.956522
transverse_colon_male_adult_37_years	chr6	31186510	31186533	31186532	-	High_confidence	5	8	21	1.572613	4.021928	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31174821	31186444	STRG.27706.1	-	31174821,31177638,31186025	31175955,31177899,31186444	0.571429
transverse_colon_male_adult_37_years	chr3	136625270	136625271	136625270	-	High_confidence	932	953	1070	80.128361	6.492409	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136604252	136625262	STRG.17010.3	-	136604252,136623145,136625204	136604473,136623248,136625262	0.906542
transverse_colon_male_adult_37_years	chr11	114638335	114638739	114638365	-	RAMPAGE_only	208	214	1431	107.162322	6.793428	chr11	114633465	114639620	LINE|L1|L1PA3	-	chr11	114633808	114651541	STRG.48457.4	-	114633808,114648240,114651162	114639619,114648345,114651541	0.998602
transverse_colon_male_adult_37_years	chr2	164761375	164761404	164761375	-	RAMPAGE_only	2	2	8	0.599091	2.750000	chr2	164761126	164761399	SINE|Alu|AluSp	+	chr2	164743188	164773733	COBLL1|ENST00000480873.1	-	164743188,164773706	164743875,164773733	0.500000
transverse_colon_male_adult_37_years	chr15	89852486	89852533	89852486	-	High_confidence	1	1	7	0.524204	2.584963	chr15	89852343	89852609	LINE|CR1|L3	-	chr15	89837617	89852656	AP3S2|ENST00000558186.1	-	89837617,89852360	89837722,89852656	0.857143
transverse_colon_male_adult_37_years	chr2	86482613	86482619	86482613	+	High_confidence	2	3	8	0.599091	2.521641	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86483573	86492715	STRG.9413.2	+	86483573,86484941,86485728,86489317,86489519,86490880,86491140,86492038	86484158,86485029,86485859,86489437,86489659,86491057,86491275,86492715	0.750000
transverse_colon_male_adult_37_years	chr14	46734392	46734432	46734392	-	RAMPAGE_only	16	16	63	4.717838	4.548864	chr14	46733820	46734635	LINE|L1|L1MCb	+	chr14	46615122	46656061	STRG.55223.1	-	46615122,46655193,46655997	46615202,46655262,46656061	0.507937
transverse_colon_male_adult_37_years	chr5	178224396	178224413	178224412	-	High_confidence	2	2	7	0.524204	2.584963	chr5	178224147	178224424	LINE|L2|L2a	+	chr5	178223387	178224496	PHYKPL|ENST00000504096.1	-	178223387,178224447	178223945,178224496	0.571429
transverse_colon_male_adult_37_years	chr11	123061212	123061257	123061256	-	High_confidence	40	42	70	5.242042	4.555157	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.957143
transverse_colon_male_adult_37_years	chr9	39809858	39809868	39809867	-	High_confidence	4	4	10	0.748863	2.503258	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.500000
transverse_colon_male_adult_37_years	chr11	114650811	114650901	114650900	+	High_confidence	14	14	76	5.691360	5.451489	chr11	114650014	114651054	LINE|L1|L1MCc	+	chr11	114650932	114651474	STRG.48454.1	+	114650932,114651241	114651045,114651474	0.565789
transverse_colon_male_adult_37_years	chr10	65570509	65570522	65570521	+	High_confidence	4	5	12	0.898636	3.277613	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570535	65585775	LINC01515|ENST00000608678.5	+	65570535,65571424,65572934,65581611,65585484	65570759,65571579,65573056,65581673,65585775	0.583333
transverse_colon_male_adult_37_years	chr6	25753355	25753365	25753355	+	RAMPAGE_only	3	3	8	0.599091	2.521641	chr6	25753191	25754237	LINE|L2|L2	-	chr6	25754695	25772482	STRG.27423.1	+	25754695,25761926,25768335,25768984,25770066	25754781,25762053,25768435,25769190,25772482	0.875000
transverse_colon_male_adult_37_years	chr16	2759736	2759820	2759797	+	High_confidence	11	11	40	2.995453	4.233998	chr16	2759705	2759830	LINE|L2|L2c	-	chr16	2759746	2761810	SRRM2|ENST00000572278.1	+	2759746,2760300,2761560	2760008,2760499,2761810	0.625000
transverse_colon_male_adult_37_years	chr21	22062635	22062676	22062647	-	High_confidence	153	170	497	37.218500	6.908527	chr21	22062350	22062974	LINE|L2|L2a	+	chr21	22037174	22062641	STRG.71352.2	-	22037174,22062008	22041435,22062641	0.947686
transverse_colon_male_adult_37_years	chr10	93431448	93431495	93431448	-	RAMPAGE_only	11	11	32	2.396362	4.327820	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93404027	93409734	STRG.44129.1	-	93404027,93408786,93409572	93404219,93408915,93409734	0.843750
transverse_colon_male_adult_37_years	chr10	5023239	5023307	5023239	-	High_confidence	9	9	70	5.242042	5.216679	chr10	5023105	5023345	LTR|ERVL-MaLR|MLT1F2	-	chr10	5006328	5023312	STRG.41656.1	-	5006328,5007406,5023058	5006592,5007506,5023312	0.642857
transverse_colon_male_adult_37_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	41	43	43	3.220112	3.790751	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.953488
transverse_colon_male_adult_37_years	chr19	41674452	41674651	41674650	-	RAMPAGE_only	52	52	310	23.214759	6.549790	chr19	41674247	41675954	LTR|ERV1|MER65-int	-	chr19	41673306	41688277	CEACAM7|NM_006890.4	-	41673306,41677375,41683784,41686858,41688101	41674759,41677503,41684063,41687221,41688277	1.000000
transverse_colon_male_adult_37_years	chr6	36540276	36540277	36540276	-	RAMPAGE_only	25	25	29	2.171703	4.582119	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36494694	36547452	STRG.27902.2	-	36494694,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540204,36547452	1.000000
transverse_colon_male_adult_37_years	chr21	46256814	46256859	46256855	-	High_confidence	2	2	8	0.599091	2.500000	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.750000
transverse_colon_male_adult_37_years	chr16	29760809	29760853	29760852	+	High_confidence	6	6	30	2.246590	4.349192	chr16	29760474	29761018	LTR|ERVL-MaLR|MLT1G1	+	chr16	29760800	29780425	STRG.60862.2	+	29760800,29779259,29779504,29780103	29760949,29779321,29779637,29780425	0.633333
transverse_colon_male_adult_37_years	chr4	148638429	148638435	148638429	-	RAMPAGE_only	4	4	8	0.599091	2.521641	chr4	148638295	148638650	LTR|ERVL-MaLR|THE1A	-	chr4	148636620	148636913	STRG.21750.1	-	148636620	148636913	0.875000
transverse_colon_male_adult_37_years	chr14	24435991	24436010	24436006	+	High_confidence	8	8	16	1.198181	3.456565	chr14	24435906	24436044	LINE|L1|L1PB4	-	chr14	24435456	24438408	KHNYN|ENST00000556255.1	+	24435456,24436387,24437035	24436179,24436489,24438408	0.937500
transverse_colon_male_adult_37_years	chr15	89852597	89852630	89852597	-	High_confidence	2	2	11	0.823750	3.321928	chr15	89852343	89852609	LINE|CR1|L3	-	chr15	89852067	89852463	STRG.59293.1	-	89852067	89852463	0.636364
transverse_colon_male_adult_37_years	chr18	47920076	47920106	47920105	-	RAMPAGE_only	4	4	9	0.673977	2.500000	chr18	47919993	47920302	LTR|ERVL-MaLR|MLT1A0	-	chr18	47870474	47923642	SMAD2|ENST00000585978.1	-	47870474,47896520,47920071,47922546,47923565	47870564,47896809,47920169,47922655,47923642	0.666667
transverse_colon_male_adult_37_years	chr21	46256892	46256893	46256892	-	High_confidence	8	8	10	0.748863	3.121928	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.900000
transverse_colon_male_adult_37_years	chr3	53495138	53495159	53495158	+	High_confidence	4	4	8	0.599091	3.000000	chr3	53495032	53495170	LINE|L2|L2a	+	chr3	53495158	53650957	CACNA1D|ENST00000636480.1	+	53495158,53497151,53501614,53650778	53495233,53497461,53501720,53650957	1.000000
transverse_colon_male_adult_37_years	chr21	41480798	41480799	41480798	-	High_confidence	6	6	9	0.673977	3.000000	chr21	41480630	41480937	SINE|Alu|AluSx1	-	chr21	41467765	41481612	STRG.71718.7	-	41467765,41470647,41471805,41473324,41476576,41479171,41480475	41468538,41470743,41471981,41473496,41476620,41479282,41481612	0.888889
transverse_colon_male_adult_37_years	chr7	107776932	107776933	107776932	-	High_confidence	6	6	8	0.599091	3.000000	chr7	107776908	107777072	SINE|MIR|MIRc	-	chr7	107776014	107776752	SLC26A3|ENST00000469651.1	-	107776014,107776636	107776544,107776752	0.500000
transverse_colon_male_adult_37_years	chr11	64242611	64242620	64242611	+	High_confidence	7	7	25	1.872158	3.819774	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.960000
transverse_colon_male_adult_37_years	chr3	195696330	195696388	195696330	+	High_confidence	7	7	25	1.872158	3.893661	chr3	195696374	195696623	LINE|L1|L1PA7	+	chr3	195696436	195708504	MUC20-OT1|ENST00000620737.3	+	195696436,195699029,195708133	195696589,195699207,195708504	0.920000
transverse_colon_male_adult_37_years	chr16	56992022	56992044	56992022	+	RAMPAGE_only	4	4	10	0.748863	2.947703	chr16	56991822	56992273	LTR|ERVL-MaLR|MLT1C	+	chr16	56989562	56992444	NLRC5|ENST00000543141.5	+	56989562,56991914	56989595,56992444	0.700000
transverse_colon_male_adult_37_years	chr9	125337329	125337361	125337329	+	RAMPAGE_only	6	6	14	1.048408	3.392747	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125302306	125342234	GAPVD1|ENST00000436712.2	+	125302306,125305062,125307412,125307690,125309928,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176,125342218	125302826,125305149,125307547,125307880,125310009,125312612,125321499,125323923,125326589,125330218,125332060,125332629,125337095,125337591,125341264,125342234	0.571429
transverse_colon_male_adult_37_years	chr11	71480100	71480115	71480100	+	High_confidence	6	6	14	1.048408	3.238901	chr11	71479919	71480150	LINE|L1|L1MB7	-	chr11	71480148	71490876	NADSYN1|ENST00000526039.6	+	71480148,71480754,71481355,71482000,71482848,71484311,71485541,71490844	71480274,71480879,71481404,71482025,71483017,71484447,71485648,71490876	0.928571
transverse_colon_male_adult_37_years	chr3	67809941	67809942	67809941	+	RAMPAGE_only	5	5	7	0.524204	2.584963	chr3	67809820	67810025	LTR|ERVL|LTR33B	-	chr3	67654757	67947713	SUCLG2-AS1|ENST00000482677.5	+	67654757,67669815,67670828,67840021,67844232,67889009,67947140	67655102,67669909,67671004,67840839,67844352,67889109,67947713	0.571429
transverse_colon_male_adult_37_years	chr19	9140390	9140428	9140393	+	High_confidence	8	8	32	2.396362	4.500000	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.812500
transverse_colon_male_adult_37_years	chr19	13927777	13927784	13927783	+	RAMPAGE_only	5	9	13	0.973522	2.815072	chr19	13927496	13927808	SINE|Alu|AluY	+	chr19	13923578	13928227	STRG.67698.3	+	13923578,13923694,13926516,13926666,13926820,13926977,13927892,13928123	13923606,13923811,13926590,13926725,13926872,13927265,13928030,13928227	0.692308
transverse_colon_male_adult_37_years	chr11	43881075	43881088	43881087	+	High_confidence	4	5	15	1.123295	3.093069	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880918	43889821	STRG.46496.1	+	43880918,43882582,43883084,43883982,43886605,43889724	43881179,43882731,43883188,43884017,43886653,43889821	0.733333
transverse_colon_male_adult_37_years	chr11	624233	624271	624247	-	High_confidence	4	4	19	1.422840	3.947703	chr11	624236	624405	SINE|MIR|MIR1_Amn	-	chr11	617255	624932	CDHR5|ENST00000531177.5	-	617255,617953,618598,619305,619473,619680,620066,620295,621079,621344,621561,621811,624212,624556,624817	617770,618111,619180,619390,619587,619881,620164,620386,621250,621455,621663,621904,624416,624732,624932	0.894737
transverse_colon_male_adult_37_years	chr1	23798402	23798443	23798442	-	High_confidence	7	7	21	1.572613	3.446439	chr1	23798311	23798605	SINE|Alu|AluJb	-	chr1	23797695	23799436	GALE|ENST00000467493.5	-	23797695,23798116,23798886,23799365	23797871,23798730,23799012,23799436	0.857143
transverse_colon_male_adult_37_years	chr19	45524130	45524140	45524139	+	RAMPAGE_only	8	8	15	1.123295	3.906891	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522733	45526983	STRG.68812.2	+	45522733,45523643,45523843,45524096,45524569,45525945,45526139	45522818,45523695,45523877,45524142,45524660,45526003,45526983	0.933333
transverse_colon_male_adult_37_years	chr3	195696423	195696424	195696423	+	High_confidence	12	12	15	1.123295	3.324863	chr3	195696374	195696623	LINE|L1|L1PA7	+	chr3	195696436	195708504	MUC20-OT1|ENST00000620737.3	+	195696436,195699029,195708133	195696589,195699207,195708504	0.733333
transverse_colon_male_adult_37_years	chr16	67571154	67571213	67571212	+	High_confidence	4	4	17	1.273067	3.007196	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	1.000000
transverse_colon_male_adult_37_years	chr18	46087118	46087174	46087118	-	RAMPAGE_only	5	5	18	1.347954	3.794653	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084149	46088696	ATP5F1A|ENST00000586523.1	-	46084149	46088696	1.000000
transverse_colon_male_adult_37_years	chr9	22113709	22113727	22113709	+	High_confidence	1	1	7	0.524204	2.584963	chr9	22113591	22113733	SINE|MIR|MIRc	+	chr9	22113677	22121097	CDKN2B-AS1|ENST00000422420.1	+	22113677,22120199,22120503	22113799,22120410,22121097	0.857143
transverse_colon_male_adult_37_years	chr2	240022172	240022313	240022172	-	RAMPAGE_only	14	14	61	4.568065	4.813705	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
transverse_colon_male_adult_37_years	chr5	126908938	126908945	126908944	-	High_confidence	5	5	9	0.673977	2.500000	chr5	126903810	126909817	LINE|L1|L1PA3	-	chr5	126907946	126908875	STRG.25139.1	-	126907946	126908875	0.777778
transverse_colon_male_adult_37_years	chr7	6590324	6590346	6590345	+	High_confidence	3	3	8	0.599091	2.500000	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.875000
transverse_colon_male_adult_37_years	chr16	89687626	89687648	89687638	+	High_confidence	4	4	15	1.123295	3.506891	chr16	89687559	89687726	SINE|Alu|AluJb	-	chr16	89687460	89687836	STRG.62154.1	+	89687460	89687836	0.800000
transverse_colon_male_adult_37_years	chr7	30594379	30594390	30594389	-	High_confidence	5	7	16	1.198181	3.506891	chr7	30594385	30594501	SINE|MIR|MIR3	+	chr7	30578952	30594413	STRG.31641.1	-	30578952,30579230,30585329,30594298	30579128,30579314,30585479,30594413	0.687500
transverse_colon_male_adult_37_years	chr19	10555125	10555126	10555125	-	RAMPAGE_only	13	14	18	1.347954	3.616875	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	0.944444
transverse_colon_male_adult_37_years	chr13	98569153	98569196	98569153	-	High_confidence	3	3	18	1.347954	2.984234	chr13	98568892	98569531	LINE|L1|HAL1	+	chr13	98568765	98569019	STRG.54242.1	-	98568765	98569019	0.722222
transverse_colon_male_adult_37_years	chr11	65181205	65181233	65181222	+	High_confidence	7	7	16	1.198181	3.373557	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.937500
transverse_colon_male_adult_37_years	chr17	59619894	59619923	59619894	+	High_confidence	141	165	418	31.302481	5.940018	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.964115
transverse_colon_male_adult_37_years	chr1	1655395	1655410	1655409	-	RAMPAGE_only	57	58	102	7.638405	5.846112	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641870	1657495	STRG.130.5	-	1641870,1642385,1645125,1649498,1652438,1655368,1657255	1642001,1642508,1645262,1649637,1652566,1655484,1657495	0.970588
transverse_colon_male_adult_37_years	chr19	15372465	15372477	15372476	-	High_confidence	3	3	9	0.673977	2.500000	chr19	15372472	15372805	LINE|L1|L1MB7	+	chr19	15353520	15373151	AKAP8|ENST00000598597.6	-	15353520,15358966,15360847,15361728,15362109,15368234,15369066,15370145,15371951,15372217,15372850	15355370,15359062,15360978,15361822,15362251,15368322,15369224,15370179,15371998,15372347,15373151	0.888889
transverse_colon_male_adult_37_years	chr7	100349884	100349885	100349884	+	RAMPAGE_only	21	22	29	2.171703	3.821296	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100351264	100351778	STRG.33413.1	+	100351264	100351778	0.758621
transverse_colon_male_adult_37_years	chr10	73536352	73536386	73536354	-	RAMPAGE_only	4	6	11	0.823750	3.027169	chr10	73536351	73536426	LINE|L1|L1PBa	+	chr10	73497537	73534770	USP54|ENST00000466048.6	-	73497537,73500654,73504849,73505307,73516374,73520907,73523582,73526646,73529679,73530142,73534599	73499188,73500838,73504990,73505426,73517747,73521027,73523750,73526780,73529911,73530523,73534770	0.636364
transverse_colon_male_adult_37_years	chr15	80059918	80059933	80059918	+	High_confidence	8	9	27	2.021931	4.103465	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.925926
transverse_colon_male_adult_37_years	chr19	50279957	50280006	50279957	+	RAMPAGE_only	9	10	30	2.246590	4.440224	chr19	50279653	50279970	LINE|L1|L1MB7	-	chr19	50268345	50310539	MYH14|ENST00000262269.12	+	50268345,50271408,50271848,50272559,50275990,50276756,50278082,50280036,50280230,50281593,50286481,50286536,50289435,50290886,50292260,50293232,50293563,50301660,50307048,50309004,50309639	50268367,50271546,50271972,50272731,50276203,50276901,50278289,50280141,50280383,50281842,50286535,50286694,50289648,50291048,50292389,50293321,50293687,50301869,50307157,50309177,50310539	0.733333
transverse_colon_male_adult_37_years	chr17	74764507	74764530	74764529	+	RAMPAGE_only	6	6	11	0.823750	2.845351	chr17	74764447	74764536	SINE|MIR|MIRb	-	chr17	74763427	74768803	SLC9A3R1|ENST00000581356.1	+	74763427,74768146,74768467	74763520,74768236,74768803	1.000000
transverse_colon_male_adult_37_years	chr11	65441801	65442117	65441842	+	RAMPAGE_only	148	150	834	62.455190	6.605788	chr11	65441504	65441864	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
transverse_colon_male_adult_37_years	chr10	122127024	122127025	122127024	+	High_confidence	8	8	11	0.823750	3.321928	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122126713	122254544	TACC2|ENST00000369000.5	+	122126713,122132608,122195039,122210396,122215402,122216626,122224725,122226365,122227836,122237394,122237960,122241957,122248642,122249049,122249543,122253990	122127142,122132734,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122237538,122238037,122242001,122248803,122249156,122249664,122254544	0.727273
transverse_colon_male_adult_37_years	chr7	107580245	107580265	107580245	+	High_confidence	42	42	161	12.056697	6.023728	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.919255
transverse_colon_male_adult_37_years	chr11	114639619	114639628	114639619	-	RAMPAGE_only	11	12	33	2.471249	4.002268	chr11	114633465	114639620	LINE|L1|L1PA3	-	chr11	114633808	114651541	STRG.48457.4	-	114633808,114648240,114651162	114639619,114648345,114651541	0.939394
transverse_colon_male_adult_37_years	chr12	13376226	13376262	13376226	-	High_confidence	5	5	12	0.898636	3.459432	chr12	13376083	13376246	DNA|hAT-Charlie|Charlie15a	-	chr12	13373013	13376430	LINC01559|ENST00000527705.2	-	13373013,13376223	13373438,13376430	0.750000
transverse_colon_male_adult_37_years	chr15	69314407	69314484	69314483	+	High_confidence	6	6	46	3.444771	5.099436	chr15	69314411	69314496	SINE|MIR|MIR3	+	chr15	69314402	69404504	PAQR5|ENST00000561153.5	+	69314402,69337340,69359965,69379882,69384676,69389653,69397467,69399973,69403580	69314794,69337505,69360131,69380010,69384882,69389780,69397564,69400115,69404504	0.847826
transverse_colon_male_adult_37_years	chr19	46733283	46733300	46733283	-	High_confidence	5	5	9	0.673977	2.500000	chr19	46733275	46733512	LINE|L1|L1MC	+	chr19	46727906	46733449	STRN4|ENST00000594847.6	-	46727906,46728617,46730731,46733038	46728007,46728777,46730873,46733449	0.888889
transverse_colon_male_adult_37_years	chr13	60442023	60442037	60442036	+	RAMPAGE_only	3	3	8	0.599091	2.807355	chr13	60441716	60442080	LTR|ERVL|MER68B	-	chr13	60434048	60485899	TDRD3|ENST00000377882.7	+	60434048,60439687,60444686,60460379,60467237,60483774,60485798	60434085,60439772,60444748,60460540,60467379,60483846,60485899	0.875000
transverse_colon_male_adult_37_years	chr17	69314662	69314663	69314662	-	High_confidence	7	7	10	0.748863	2.947703	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	0.800000
transverse_colon_male_adult_37_years	chr20	9333522	9333555	9333534	+	High_confidence	5	5	16	1.198181	3.250000	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9333454	9362967	STRG.69718.1	+	9333454,9337125,9338007,9338893,9362895	9333570,9337206,9338067,9339037,9362967	1.000000
transverse_colon_male_adult_37_years	chr1	33021373	33021432	33021416	-	RAMPAGE_only	7	7	30	2.246590	4.047299	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.966667
transverse_colon_male_adult_37_years	chr16	14678687	14678693	14678692	-	RAMPAGE_only	3	4	7	0.524204	2.584963	chr16	14678486	14678779	SINE|Alu|AluSx	+	chr16	14672547	14694573	PLA2G10|NM_003561.2	-	14672547,14688164,14690494,14694132	14672749,14688271,14690645,14694573	0.571429
transverse_colon_male_adult_37_years	chr15	92914969	92914974	92914973	+	High_confidence	6	6	14	1.048408	3.467720	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.928571
transverse_colon_male_adult_37_years	chr9	68742556	68742565	68742556	+	High_confidence	3	3	11	0.823750	2.913977	chr9	68742382	68742567	SINE|MIR|MIRb	-	chr9	68742254	68889133	PIP5K1B|ENST00000440050.5	+	68742254,68742500,68818460,68822614,68863836,68876676,68888980	68742354,68742657,68818545,68822683,68863967,68876794,68889133	1.000000
transverse_colon_male_adult_37_years	chr6	70783182	70783190	70783182	+	High_confidence	2	2	7	0.524204	2.807355	chr6	70782891	70788469	LINE|L1|L1PA4	+	chr6	70783536	70784198	STRG.28660.1	+	70783536	70784198	0.571429
transverse_colon_male_adult_37_years	chr14	91462209	91462247	91462209	-	RAMPAGE_only	5	6	21	1.572613	3.820889	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458007	91509763	PPP4R3A|ENST00000554943.5	-	91458007,91461380,91462048,91462734,91465249,91470836,91473032,91473238,91475810,91476407,91476908,91481575,91485631,91490746,91509505	91458869,91461607,91462239,91462877,91465419,91470995,91473135,91473370,91475966,91476524,91476986,91482193,91485730,91490802,91509763	0.571429
transverse_colon_male_adult_37_years	chr19	43734595	43734596	43734595	-	High_confidence	8	8	12	0.898636	3.188722	chr19	43734554	43734683	DNA|hAT-Charlie|Charlie4z	-	chr19	43733423	43734825	SMG9|ENST00000598860.1	-	43733423,43733625,43734388	43733452,43733733,43734825	0.916667
transverse_colon_male_adult_37_years	chr5	149905163	149905189	149905188	-	RAMPAGE_only	19	24	45	3.369884	4.630633	chr5	149904974	149905604	LINE|L2|L2c	+	chr5	149857954	149944793	PDE6A|ENST00000617647.4	-	149857954,149859891,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647,149907311,149914942,149921634,149931027,149944199	149858530,149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149903695,149907378,149915007,149921709,149931168,149944793	0.977778
transverse_colon_male_adult_37_years	chr10	84204577	84204599	84204598	+	High_confidence	3	3	6	0.449318	2.584963	chr10	84204631	84204716	SINE|MIR|MIR	+	chr10	84204552	84208862	CDHR1|ENST00000624091.1	+	84204552,84205731,84208173,84208728	84204605,84205927,84208377,84208862	1.000000
transverse_colon_male_adult_37_years	chr15	88635631	88635655	88635654	+	High_confidence	5	5	16	1.198181	3.000000	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303233.1	+	88635636,88639342,88652109,88655414	88635700,88639594,88652310,88656344	0.625000
transverse_colon_male_adult_37_years	chr19	50249718	50249812	50249811	+	RAMPAGE_only	21	23	65	4.867611	4.416158	chr19	50249856	50250043	SINE|MIR|MIR	+	chr19	50210365	50309790	MYH14|ENST00000596571.5	+	50210365,50217614,50223082,50223246,50225584,50226902,50230524,50231929,50244241,50247003,50248986,50249649,50250514,50252638,50257298,50259143,50260645,50261474,50263311,50266876,50268160,50271408,50271848,50272559,50275990,50276756,50278082,50280036,50280230,50281593,50286481,50289435,50290886,50292260,50293232,50293563,50301660,50307048,50309004,50309639	50210770,50217771,50223110,50223349,50225677,50226966,50230623,50232070,50244337,50247122,50249139,50249823,50250688,50252753,50257486,50259265,50260715,50261635,50263420,50267008,50268367,50271546,50271972,50272731,50276203,50276901,50278289,50280141,50280383,50281842,50286694,50289648,50291048,50292389,50293321,50293687,50301869,50307157,50309177,50309790	0.969231
transverse_colon_male_adult_37_years	chr2	70081003	70081023	70081003	-	RAMPAGE_only	4	4	13	0.973522	3.238901	chr2	70080946	70081068	SINE|Alu|AluJo	-	chr2	69963281	70083565	PCBP1-AS1|ENST00000626370.2	-	69963281,69975558,69996685,70032132,70051202,70083506	69963500,69975635,69996888,70032255,70051305,70083565	0.615385
transverse_colon_male_adult_37_years	chr9	121314002	121314021	121314020	+	RAMPAGE_only	38	39	57	4.268520	4.585181	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.982456
transverse_colon_male_adult_37_years	chr11	65430404	65430424	65430423	+	RAMPAGE_only	3	4	10	0.748863	3.169925	chr11	65430444	65430516	DNA|hAT-Charlie|Charlie4z	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.900000
transverse_colon_male_adult_37_years	chr2	95121526	95121564	95121563	-	High_confidence	2	2	7	0.524204	2.521641	chr2	95121485	95121588	SINE|MIR|MIR3	-	chr2	95085390	95121557	MRPS5|NM_001321995.1	-	95085390,95090385,95100473,95100836,95101676,95104639,95106422,95108174,95109915,95115065,95117864,95121442	95087581,95090522,95100536,95100894,95101723,95104730,95106457,95108408,95110041,95115203,95117945,95121557	0.857143
transverse_colon_male_adult_37_years	chr22	38099039	38099071	38099039	-	RAMPAGE_only	3	3	12	0.898636	3.095795	chr22	38098978	38099043	LINE|L2|L2b	+	chr22	38084902	38110645	BAIAP2L2|ENST00000332536.9	-	38084902,38085685,38086241,38086389,38087123,38088747,38089095,38089521,38097031,38098062,38098410,38107851,38108254,38109132,38110474	38085375,38085732,38086347,38086449,38087264,38088964,38089231,38089674,38097178,38098179,38098482,38107913,38108341,38109208,38110645	0.666667
transverse_colon_male_adult_37_years	chr14	22909560	22909561	22909560	-	RAMPAGE_only	7	7	8	0.599091	2.521641	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22906027	22919110	RBM23|ENST00000554955.5	-	22906027,22908332,22909482,22911327,22918998	22906368,22908380,22909595,22911403,22919110	0.875000
transverse_colon_male_adult_37_years	chr16	19430479	19430501	19430500	+	RAMPAGE_only	4	4	10	0.748863	3.169925	chr16	19430397	19430533	LINE|RTE-X|L4_B_Mam	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	0.900000
transverse_colon_male_adult_37_years	chr4	48546124	48546228	48546124	-	High_confidence	4	4	34	2.546135	3.987301	chr4	48546053	48546089	LINE|CR1|X7C_LINE	-	chr4	48521093	48546759	FRYL|ENST00000513401.5	-	48521093,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066	48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546759	0.882353
transverse_colon_male_adult_37_years	chr2	11201313	11201359	11201313	-	RAMPAGE_only	3	3	26	1.947044	4.363713	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11194558	11221340	STRG.7455.2	-	11194558,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197	11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221340	1.000000
transverse_colon_male_adult_37_years	chr5	157053004	157053057	157053025	-	High_confidence	41	41	125	9.360790	5.645187	chr5	157052925	157053104	SINE|Alu|AluJr	-	chr5	157049102	157052998	STRG.26211.1	-	157049102,157052360,157052947	157049145,157052654,157052998	0.880000
transverse_colon_male_adult_37_years	chr3	195722495	195722526	195722495	+	RAMPAGE_only	21	23	50	3.744316	4.988758	chr3	195722358	195722503	SINE|MIR|MIRc	-	chr3	195720994	195733504	MUC20|ENST00000320736.10	+	195720994,195724679,195725672,195729647,195733149	195721083,195725159,195726572,195729739,195733504	0.660000
transverse_colon_male_adult_37_years	chr1	89272843	89272883	89272843	-	High_confidence	2	2	11	0.823750	3.027169	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.909091
transverse_colon_male_adult_37_years	chrX	101499217	101499218	101499217	+	RAMPAGE_only	12	12	13	0.973522	3.084963	chrX	101498232	101500000	LTR|ERVL|HERV16-int	+	chrX	101485474	101533459	ARMCX4|ENST00000354842.4	+	101485474,101486022,101487192,101487607,101488043,101488443,101498144,101504936,101509363,101509589,101511024,101531643,101533083	101485530,101486092,101487272,101487691,101488099,101489315,101499366,101505355,101509427,101509678,101511055,101532012,101533459	0.923077
transverse_colon_male_adult_37_years	chr18	49872174	49872209	49872174	-	RAMPAGE_only	7	7	13	0.973522	3.251629	chr18	49871998	49872125	SINE|MIR|MIR3	-	chr18	49863261	49876283	MYO5B|ENST00000587895.1	-	49863261,49864140,49872166,49875686,49876235	49863327,49864380,49872232,49875827,49876283	0.769231
transverse_colon_male_adult_37_years	chr19	50286305	50286329	50286305	+	RAMPAGE_only	4	4	9	0.673977	2.503258	chr19	50286245	50286337	LINE|L1|L1MEf	-	chr19	50284763	50310539	MYH14|ENST00000595016.1	+	50284763,50289435,50290886,50292260,50293232,50293563,50301660,50307048,50309004,50309639	50286694,50289648,50291048,50292389,50293321,50293687,50301869,50307157,50309177,50310539	0.888889
transverse_colon_male_adult_37_years	chr1	222737215	222737290	222737289	+	High_confidence	15	16	92	6.889541	5.930852	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.565217
transverse_colon_male_adult_37_years	chr7	100349734	100349767	100349734	+	RAMPAGE_only	5	6	14	1.048408	3.378783	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100338176	100350158	STAG3L5P|ENST00000493499.1	+	100338176,100338772,100345864,100349716	100338264,100338889,100345968,100350158	0.642857
transverse_colon_male_adult_37_years	chr10	87127818	87127826	87127822	+	RAMPAGE_only	4	4	13	0.973522	3.251629	chr10	87127730	87127850	SINE|MIR|MIR	-	chr10	87095218	87152928	STRG.43876.1	+	87095218,87096933,87151349	87095248,87096989,87152928	0.615385
transverse_colon_male_adult_37_years	chr16	27330079	27330102	27330079	+	RAMPAGE_only	3	3	8	0.599091	3.000000	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27320240	27346618	STRG.60645.4	+	27320240,27330065,27340185,27342120,27344593,27346466	27320290,27330198,27340273,27342259,27345020,27346618	0.625000
transverse_colon_male_adult_37_years	chr16	29821628	29821670	29821669	-	High_confidence	2	2	7	0.524204	2.807355	chr16	29821655	29821819	SINE|MIR|MIRb	+	chr16	29819416	29821252	AC009133.1|ENST00000564980.1	-	29819416,29820877	29819601,29821252	0.857143
transverse_colon_male_adult_37_years	chr10	103890280	103890286	103890285	-	RAMPAGE_only	13	13	26	1.947044	3.813661	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103917669	STN1|ENST00000369764.1	-	103882554,103889071,103892129,103897547,103898876,103900061,103905090,103910526,103917461	103882841,103889144,103892252,103897719,103899000,103900223,103905156,103910622,103917669	0.961538
transverse_colon_male_adult_37_years	chr1	17513356	17513434	17513372	+	RAMPAGE_only	13	13	65	4.867611	5.120865	chr1	17513264	17513548	DNA|TcMar-Mariner|MARNA	-	chr1	17520217	17697649	STRG.724.2	+	17520217,17580552,17587459,17588445,17602126,17603507,17607798,17616093,17619338,17621863,17622995,17624386,17625955,17627329,17632320,17634547,17637887,17638561,17640201,17648553,17654635,17655878,17656553,17664446,17687572,17695157,17696847	17520458,17580632,17587645,17588479,17602218,17603591,17607977,17616202,17619445,17621941,17623175,17624503,17626048,17627503,17632466,17635016,17638003,17638689,17640302,17648675,17654722,17656102,17656708,17664595,17687747,17695280,17697649	0.600000
transverse_colon_male_adult_37_years	chr22	35311050	35311077	35311076	+	High_confidence	4	4	12	0.898636	3.022055	chr22	35310706	35311148	LINE|L2|L2c	-	chr22	35311061	35323819	TOM1|ENST00000443206.2	+	35311061,35317876,35321958,35323027,35323495,35323767	35311127,35317961,35322037,35323177,35323630,35323819	1.000000
transverse_colon_male_adult_37_years	chr1	195722237	195722295	195722256	-	High_confidence	10	10	64	4.792724	4.836395	chr1	195721970	195723453	LTR|ERV1|LTR12C	-	chr1	195721760	195722365	STRG.5825.1	-	195721760	195722365	0.937500
transverse_colon_male_adult_37_years	chr12	100410563	100410609	100410563	+	High_confidence	12	12	33	2.471249	4.502583	chr12	100410510	100410676	SINE|Alu|AluSx1	+	chr12	100410620	100420089	SLC17A8|ENST00000552697.1	+	100410620,100412769,100418028,100419814	100410699,100412880,100418156,100420089	0.787879
transverse_colon_male_adult_37_years	chr11	1092854	1092878	1092854	+	RAMPAGE_only	15	15	40	2.995453	4.701944	chr11	1092816	1092887	DNA|hAT-Ac|OldhAT1	-	chr11	1074883	1100068	STRG.45379.2	+	1074883,1075650,1077453,1078122,1078311,1081661,1082284,1082480,1082877,1083076,1083424,1083652,1084290,1084591,1085067,1085553,1085744,1086245,1086734,1087754,1087946,1088257,1089508,1089941,1090763,1092398,1092843,1094141,1095757	1074977,1075921,1078042,1078232,1078522,1081787,1082402,1082619,1082988,1083146,1083562,1083817,1084385,1084718,1085323,1085606,1085845,1086397,1086873,1087865,1088126,1088497,1089665,1090073,1090911,1092442,1093047,1095619,1100068	0.950000
transverse_colon_male_adult_37_years	chr2	232816731	232816752	232816751	+	RAMPAGE_only	28	31	113	8.462154	5.396029	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.946903
transverse_colon_male_adult_37_years	chr11	77175254	77175297	77175259	+	High_confidence	3	3	16	1.198181	3.640224	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.937500
transverse_colon_male_adult_37_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	10	10	10	0.748863	2.721928	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336248	155440539	STRG.4665.1	-	155336248,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155440502	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155440539	1.000000
transverse_colon_male_adult_37_years	chr13	44142536	44142540	44142537	+	High_confidence	2	3	6	0.449318	2.584963	chr13	44142564	44142638	SINE|MIR|MIRb	+	chr13	44142545	44148030	SMIM2-AS1|ENST00000444663.5	+	44142545,44143556,44146781,44147937	44142696,44143737,44146855,44148030	0.833333
transverse_colon_male_adult_37_years	chr17	50737390	50737391	50737390	+	High_confidence	6	6	9	0.673977	2.641604	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50736634	50741673	LUC7L3|ENST00000513025.2	+	50736634,50740305,50741101,50741656	50737026,50740345,50741246,50741673	0.555556
transverse_colon_male_adult_37_years	chr1	220090399	220090421	220090402	-	High_confidence	8	8	34	2.546135	3.638140	chr1	220090323	220090490	SINE|Alu|AluJr	-	chr1	220057483	220090462	BPNT1|ENST00000469520.6	-	220057483,220059685,220062756,220067301,220069383,220072849,220073966,220079726,220089685,220090286	220058992,220059791,220062954,220067393,220069432,220072957,220074071,220079854,220089951,220090462	0.970588
transverse_colon_male_adult_37_years	chr5	109383420	109383460	109383446	-	High_confidence	6	6	22	1.647499	3.653757	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.954545
transverse_colon_male_adult_37_years	chr1	24666746	24666769	24666768	+	High_confidence	6	7	13	0.973522	3.546594	chr1	24666479	24666789	SINE|Alu|AluSx1	+	chr1	24666554	24669264	SRRM1|ENST00000489130.2	+	24666554,24669122	24666925,24669264	0.846154
transverse_colon_male_adult_37_years	chr7	93219154	93219170	93219169	-	High_confidence	8	11	21	1.572613	3.916127	chr7	93219071	93219143	LINE|CR1|L3	-	chr7	93208622	93219483	STRG.33139.2	-	93208622,93215400,93219100	93208876,93215685,93219483	0.952381
transverse_colon_male_adult_37_years	chr16	2669653	2669678	2669657	-	RAMPAGE_only	3	4	9	0.673977	3.000000	chr16	2669524	2670537	LTR|ERVK|LTR13	-	chr16	2663081	2671461	ERVK13-1|ENST00000562807.5	-	2663081,2669410,2671344	2663407,2669561,2671461	0.555556
transverse_colon_male_adult_37_years	chr17	59651208	59651236	59651214	+	RAMPAGE_only	3	3	12	0.898636	2.913977	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.833333
transverse_colon_male_adult_37_years	chr9	127531649	127531707	127531649	-	RAMPAGE_only	6	6	15	1.123295	3.521641	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.666667
transverse_colon_male_adult_37_years	chr9	72207925	72207959	72207927	+	RAMPAGE_only	2	3	10	0.748863	2.641604	chr9	72207825	72208107	SINE|Alu|AluJr	+	chr9	72149466	72228166	STRG.39533.3	+	72149466,72195499,72202570,72208029,72210686,72213885,72219478,72223119,72225676,72227942	72149682,72195588,72202742,72208171,72210774,72213991,72219506,72223227,72225784,72228166	0.900000
transverse_colon_male_adult_37_years	chr7	15668217	15668227	15668220	+	High_confidence	3	4	9	0.673977	2.500000	chr7	15668111	15668470	DNA|TcMar-Tigger|Tigger2a	+	chr7	15667946	15681980	AC005550.2|ENST00000451240.1	+	15667946,15676019,15677462,15678913	15668296,15676160,15677647,15681980	0.888889
transverse_colon_male_adult_37_years	chr5	142875119	142875157	142875156	+	High_confidence	6	6	20	1.497726	3.892407	chr5	142875200	142875313	SINE|MIR|MIR3	+	chr5	142874892	142919443	ARHGAP26|ENST00000475287.2	+	142874892,142879373,142885297,142894237,142901934,142903539,142907703,142913198,142919210	142875171,142879445,142885399,142894348,142902039,142903669,142907804,142913293,142919443	0.900000
transverse_colon_male_adult_37_years	chr3	108375756	108375777	108375776	+	RAMPAGE_only	7	7	13	0.973522	3.700440	chr3	108375646	108375863	LTR|ERVL|LTR33	-	chr3	108353655	108378285	HHLA2|ENST00000482099.1	+	108353655,108355114,108357843,108362341,108375749,108376492	108353780,108355381,108358161,108362446,108375800,108378285	1.000000
transverse_colon_male_adult_37_years	chr11	15768351	15768352	15768351	-	RAMPAGE_only	716	726	997	74.661660	7.191630	chr11	15768094	15768378	LTR|ERVL-MaLR|MLT1N2	-	chr11	15701962	15758898	AC087379.1|ENST00000524613.1	-	15701962,15702281,15703750,15704543,15706966,15710961,15714335,15716120,15758711	15702183,15702342,15703809,15704620,15707094,15711020,15714378,15716278,15758898	0.575727
transverse_colon_male_adult_37_years	chr21	41480736	41480764	41480736	-	High_confidence	3	3	12	0.898636	2.918296	chr21	41480630	41480937	SINE|Alu|AluSx1	-	chr21	41467765	41481612	STRG.71718.7	-	41467765,41470647,41471805,41473324,41476576,41479171,41480475	41468538,41470743,41471981,41473496,41476620,41479282,41481612	0.750000
transverse_colon_male_adult_37_years	chr9	111284874	111284875	111284874	-	High_confidence	4	4	6	0.449318	2.584963	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111284619	111284840	STRG.40445.1	-	111284619	111284840	0.833333
transverse_colon_male_adult_37_years	chr3	195689341	195689361	195689360	+	High_confidence	5	5	9	0.673977	3.000000	chr3	195689376	195689522	LINE|L1|L1MC5a	+	chr3	195689350	195708807	MUC20-OT1|ENST00000625776.2	+	195689350,195696360,195699029,195701379,195708133,195708746	195689438,195696589,195699207,195701432,195708435,195708807	0.555556
transverse_colon_male_adult_37_years	chr3	195688578	195688580	195688578	+	High_confidence	6	12	15	1.123295	3.373557	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688520	195708807	MUC20-OT1|ENST00000630417.2	+	195688520,195689338,195699029,195708133,195708746	195688797,195689438,195699207,195708435,195708807	0.533333
transverse_colon_male_adult_37_years	chr5	1812115	1812147	1812115	+	High_confidence	4	4	10	0.748863	2.846439	chr5	1812032	1812378	LTR|ERVL-MaLR|MSTD	-	chr5	1812337	1816048	STRG.22460.3	+	1812337,1814338,1815850	1812382,1814461,1816048	0.700000
transverse_colon_male_adult_37_years	chr1	195722378	195722382	195722381	-	High_confidence	117	117	250	18.721580	5.690613	chr1	195721970	195723453	LTR|ERV1|LTR12C	-	chr1	195721760	195722365	STRG.5825.1	-	195721760	195722365	0.940000
transverse_colon_male_adult_37_years	chr5	39448700	39448713	39448700	-	RAMPAGE_only	15	17	29	2.171703	4.351823	chr5	39448488	39449045	LTR|ERVL|MLT2B3	-	chr5	39393257	39462300	DAB2|ENST00000511792.5	-	39393257,39394229,39462077	39393393,39394421,39462300	0.655172
transverse_colon_male_adult_37_years	chr12	123390760	123390774	123390773	+	High_confidence	7	7	14	1.048408	3.180833	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123390379	123408242	STRG.52761.1	+	123390379,123395046,123396344,123403572,123404883,123407492	123390786,123395266,123396432,123403632,123405074,123408242	0.928571
transverse_colon_male_adult_37_years	chr13	46374832	46374833	46374832	-	High_confidence	9	9	12	0.898636	3.277613	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46368764	46374832	STRG.53648.1	-	46368764,46371940,46374722	46368815,46372597,46374832	0.750000
transverse_colon_male_adult_37_years	chr1	17637779	17637780	17637779	+	High_confidence	6	6	7	0.524204	2.584963	chr1	17637500	17637803	SINE|Alu|AluY	-	chr1	17637557	17697649	STRG.724.4	+	17637557,17638561,17640201,17648553,17654635,17655878,17656553,17664446,17687572,17694784,17695162,17696847	17638003,17638689,17640302,17648675,17654722,17656102,17656708,17664595,17687747,17694997,17695280,17697649	0.571429
transverse_colon_male_adult_37_years	chr22	37755641	37755658	37755657	+	RAMPAGE_only	8	10	13	0.973522	3.238901	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	0.769231
transverse_colon_male_adult_37_years	chr21	39657326	39657337	39657326	+	High_confidence	20	21	72	5.391815	5.582916	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657326	39662889	B3GALT5|ENST00000380618.5	+	39657326,39659752,39660559	39657599,39659912,39662889	0.833333
transverse_colon_male_adult_37_years	chr4	148680517	148680547	148680546	-	High_confidence	174	184	449	33.623957	5.670252	chr4	148680464	148680625	DNA|hAT-Charlie|MER5A	+	chr4	148680149	148680521	STRG.21783.1	-	148680149	148680521	0.886414
transverse_colon_male_adult_37_years	chr20	18794077	18794086	18794085	+	High_confidence	12	12	23	1.722385	3.653757	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.913043
transverse_colon_male_adult_37_years	chr6	89656003	89656023	89656003	-	RAMPAGE_only	2	2	8	0.599091	2.807355	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642498	89819723	MDN1|ENST00000369393.7	-	89642498,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89706058,89707360,89708495,89710680,89712035,89712574,89713147,89714542,89715652,89716649,89718365,89718766,89719135,89722954,89723511,89725198,89727832,89728930,89730725,89732556,89738325,89740233,89743149,89743575,89745272,89745491,89747328,89749222,89749542,89750353,89751430,89753511,89754082,89756276,89758254,89758815,89761644,89762318,89771560,89772572,89774620,89776599,89780211,89781398,89785011,89787853,89789779,89790158,89793761,89794099,89794576,89803327,89819505	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89706192,89707476,89708628,89710794,89712256,89712786,89713296,89714751,89715769,89716809,89718627,89719030,89719225,89723143,89723619,89725396,89727955,89729139,89730923,89732775,89738455,89740378,89743280,89743714,89745411,89745626,89747470,89749369,89749751,89750532,89751582,89753622,89754230,89756390,89758351,89758960,89761748,89762530,89771621,89772721,89774733,89776695,89780293,89781592,89785126,89787957,89789911,89790401,89793954,89794207,89794801,89803554,89819723	0.875000
transverse_colon_male_adult_37_years	chr2	86482577	86482578	86482577	+	High_confidence	45	45	49	3.669430	4.726755	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86483573	86492715	STRG.9413.2	+	86483573,86484941,86485728,86489317,86489519,86490880,86491140,86492038	86484158,86485029,86485859,86489437,86489659,86491057,86491275,86492715	0.918367
transverse_colon_male_adult_37_years	chr17	81845356	81845379	81845356	-	High_confidence	12	12	23	1.722385	3.879664	chr17	81845321	81845418	SINE|Alu|AluJo	+	chr17	81843491	81845456	P4HB|ENST00000473021.1	-	81843491,81845143	81844092,81845456	0.913043
transverse_colon_male_adult_37_years	chr1	116984535	116984536	116984535	+	RAMPAGE_only	6	6	7	0.524204	2.584963	chr1	116984390	116984612	SINE|MIR|MIR	+	chr1	116910056	116990358	PTGFRN|ENST00000393203.2	+	116910056,116941714,116944678,116949191,116961242,116966910,116974215,116984679,116986800	116910252,116942083,116945092,116949572,116961668,116967330,116974323,116984985,116990358	0.714286
transverse_colon_male_adult_37_years	chr17	2667195	2667196	2667195	+	High_confidence	8	8	8	0.599091	2.750000	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	1.000000
transverse_colon_male_adult_37_years	chr17	39187656	39187659	39187656	-	High_confidence	2	3	6	0.449318	2.584963	chr17	39187650	39187724	LINE|L1|L1ME3B	+	chr17	39184324	39187439	CACNB1|ENST00000577582.5	-	39184324,39184783,39186495,39186792,39187230	39184383,39184864,39186572,39186929,39187439	0.500000
transverse_colon_male_adult_37_years	chr17	75742748	75742759	75742748	+	High_confidence	8	9	24	1.797272	3.224679	chr17	75742779	75742995	SINE|MIR|MIRb	+	chr17	75742423	75749045	ITGB4|ENST00000584025.1	+	75742423,75743712,75746263,75748840	75742761,75743861,75746375,75749045	0.791667
transverse_colon_male_adult_37_years	chr1	179517545	179517558	179517545	+	High_confidence	30	31	102	7.638405	5.809671	chr1	179516075	179517979	LINE|L1|L1PB1	-	chr1	179517575	179533825	STRG.5525.1	+	179517575,179525333,179528326,179533794	179517681,179525447,179528431,179533825	0.558824
transverse_colon_male_adult_37_years	chr20	44355238	44355242	44355241	-	High_confidence	9	10	22	1.647499	3.784184	chr20	44355193	44355255	SINE|MIR|MIR	+	chr20	44347551	44355185	AL117382.1|ENST00000438702.1	-	44347551,44350619,44351867,44355018	44347818,44350856,44351950,44355185	0.863636
transverse_colon_male_adult_37_years	chr12	13376665	13376748	13376708	-	High_confidence	19	19	90	6.739769	5.669918	chr12	13376413	13376888	LTR|ERVL|MLT2B1	-	chr12	13371088	13376711	LINC01559|ENST00000318426.6	-	13371088,13376223,13376513	13373438,13376425,13376711	0.911111
transverse_colon_male_adult_37_years	chr1	15758297	15758353	15758297	+	High_confidence	6	6	17	1.273067	3.734522	chr1	15758111	15758311	SINE|MIR|MIRb	-	chr1	15758418	15786594	FBLIM1|ENST00000375766.7	+	15758418,15764495,15764963,15767375,15768527,15770408,15774617,15777169,15784547	15758848,15764685,15765233,15767563,15768630,15770578,15774796,15777287,15786594	1.000000
transverse_colon_male_adult_37_years	chr5	180831002	180831019	180831009	+	High_confidence	4	4	11	0.823750	2.721928	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831364	180835678	LINC00847|ENST00000501937.2	+	180831364,180834311	180831806,180835678	0.727273
transverse_colon_male_adult_37_years	chr18	6947458	6947465	6947458	-	High_confidence	8	8	13	0.973522	3.418296	chr18	6947365	6947479	SINE|MIR|MIR3	+	chr18	6941907	6947470	STRG.65789.1	-	6941907,6943179,6947162	6942239,6943402,6947470	0.923077
transverse_colon_male_adult_37_years	chr17	36510968	36510969	36510968	-	High_confidence	8	8	10	0.748863	3.321928	chr17	36510964	36511121	SINE|MIR|MIRc	-	chr17	36507422	36510853	MYO19|ENST00000615902.1	-	36507422,36507802,36508896,36510745	36507512,36507924,36509135,36510853	1.000000
transverse_colon_male_adult_37_years	chr7	107792094	107792095	107792094	-	RAMPAGE_only	5	7	8	0.599091	2.521641	chr7	107792048	107792181	LINE|L1|L1MB7	+	chr7	107765471	107803207	SLC26A3|ENST00000340010.9	-	107765471,107767578,107767765,107772053,107773919,107774776,107776451,107776636,107778174,107779667,107782796,107782979,107783204,107786826,107787356,107789523,107791047,107791829,107793741,107794378,107803110	107765878,107767644,107767908,107772108,107774153,107774872,107776544,107776706,107778281,107779763,107782874,107783093,107783352,107786909,107787509,107789688,107791235,107791940,107793881,107794597,107803207	0.625000
transverse_colon_male_adult_37_years	chr20	9333479	9333488	9333479	+	High_confidence	33	33	69	5.167156	4.880147	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9333454	9362967	STRG.69718.1	+	9333454,9337125,9338007,9338893,9362895	9333570,9337206,9338067,9339037,9362967	0.956522
transverse_colon_male_adult_37_years	chrX	5726116	5726129	5726128	-	High_confidence	3	4	7	0.524204	2.807355	chrX	5725893	5726121	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.857143
transverse_colon_male_adult_37_years	chr1	26301699	26301702	26301699	-	RAMPAGE_only	7	7	12	0.898636	2.732159	chr1	26301608	26301669	LINE|L2|L2	-	chr1	26285942	26303016	UBXN11|ENST00000442942.6	-	26285942,26294204,26296918,26297426,26297961,26301693,26302812	26286037,26294331,26296995,26297481,26298062,26301722,26303016	0.916667
transverse_colon_male_adult_37_years	chr11	114651543	114651544	114651543	-	High_confidence	4087	4125	5221	390.981471	5.822970	chr11	114651116	114651893	LTR|ERV1|LTR12	-	chr11	114640648	114651541	STRG.48457.5	-	114640648,114648240,114651162	114644382,114648345,114651541	0.919747
transverse_colon_male_adult_37_years	chr1	1721622	1721708	1721636	-	High_confidence	58	59	174	13.030219	6.333024	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.810345
transverse_colon_male_adult_37_years	chr19	51350329	51350379	51350378	-	RAMPAGE_only	4	4	14	1.048408	3.180833	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.928571
transverse_colon_male_adult_37_years	chr15	67223153	67223154	67223153	-	RAMPAGE_only	10	10	13	0.973522	3.251629	chr15	67222907	67223177	LINE|L2|L2-3_Crp	+	chr15	67201672	67221202	AAGAB|ENST00000538028.1	-	67201672,67203547,67204043,67208561,67209461,67220488,67221038	67202898,67203597,67204148,67208658,67209544,67220540,67221202	0.615385
transverse_colon_male_adult_37_years	chr7	101091420	101091442	101091441	+	RAMPAGE_only	13	13	30	2.246590	4.240224	chr7	101091445	101091756	SINE|Alu|AluSq2	+	chr7	101085438	101097967	TRIM56|ENST00000306085.10	+	101085438,101087005,101087311	101085571,101087168,101097967	0.933333
transverse_colon_male_adult_37_years	chr18	57761898	57761904	57761898	-	RAMPAGE_only	2	3	6	0.449318	2.584963	chr18	57761672	57761967	SINE|Alu|AluSc	+	chr18	57669422	57731754	ATP8B1|ENST00000648467.1	-	57669422,57671467,57674833,57684035,57685071,57688298,57691806,57694581,57695170,57695449,57697617,57697794,57701038,57701214,57706489,57731626	57669482,57671580,57675054,57684192,57685115,57688507,57691997,57694670,57695329,57695532,57697688,57697867,57701100,57701313,57706587,57731754	0.666667
transverse_colon_male_adult_37_years	chr14	81192654	81192682	81192669	-	RAMPAGE_only	13	14	53	3.968975	5.171132	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81185542	81197469	STRG.56385.1	-	81185542,81192518,81196107,81197408	81185620,81192839,81196241,81197469	0.981132
transverse_colon_male_adult_37_years	chr1	203429182	203429251	203429250	-	High_confidence	38	39	134	10.034767	6.211717	chr1	203429152	203429582	LTR|ERVK|LTR22A	-	chr1	203428817	203429229	STRG.6081.1	-	203428817	203429229	0.776119
transverse_colon_male_adult_37_years	chr9	123179130	123179221	123179220	-	High_confidence	23	23	73	5.466701	5.470245	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123136392	123179219	STRG.40771.1	-	123136392,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006	123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179219	0.945205
transverse_colon_male_adult_37_years	chr1	20895568	20895578	20895577	-	High_confidence	5	5	11	0.823750	2.521928	chr1	20895547	20896174	DNA|TcMar-Tigger|Tigger3b	+	chr1	20807003	20895635	STRG.808.6	-	20807003,20810737,20813157,20817391,20825099,20827616,20829146,20840855,20849414,20851257,20853559,20854977,20857402,20860384,20862227,20864475,20865115,20879281,20886200,20893516,20895367	20807500,20810884,20813239,20817538,20825198,20827698,20829272,20841028,20849530,20851478,20853677,20855071,20857497,20860517,20862332,20864712,20865262,20879520,20886371,20893636,20895635	0.909091
transverse_colon_male_adult_37_years	chr7	66560661	66560662	66560661	-	RAMPAGE_only	4	4	7	0.524204	2.584963	chr7	66560421	66560709	SINE|Alu|AluSq10	+	chr7	66554587	66576923	AC006001.3|ENST00000428370.1	-	66554587,66573388,66576757	66554837,66573551,66576923	0.857143
transverse_colon_male_adult_37_years	chr19	47751067	47751103	47751102	+	High_confidence	5	5	9	0.673977	3.169925	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47750177	47757005	NOP53|ENST00000595143.5	+	47750177,47750907,47751519,47752511,47754526,47754708,47755783,47756527,47756687,47756998	47750286,47751107,47751590,47752607,47754631,47754757,47755822,47756604,47756744,47757005	0.555556
transverse_colon_male_adult_37_years	chr12	20385253	20385269	20385262	+	RAMPAGE_only	17	17	51	3.819202	4.849402	chr12	20385213	20385939	LINE|L1|L1PA5	+	chr12	20382054	20385778	STRG.49878.1	+	20382054	20385778	0.941176
transverse_colon_male_adult_37_years	chr1	44783887	44783909	44783887	-	RAMPAGE_only	6	6	11	0.823750	3.121928	chr1	44783725	44783905	DNA|hAT-Charlie|MER5A	+	chr1	44783584	44787705	BEST4|ENST00000372207.3	-	44783584,44784628,44784904,44785107,44785598,44786073,44786462,44787371,44787553	44784483,44784783,44784985,44785305,44785676,44786228,44786696,44787466,44787705	0.818182
transverse_colon_male_adult_37_years	chr4	56272390	56272412	56272398	+	High_confidence	2	2	12	0.898636	2.732159	chr4	56272344	56272407	LINE|CR1|L3	+	chr4	56272403	56328092	KIAA1211|ENST00000541073.5	+	56272403,56298213,56301225,56307534,56310665,56313196,56314039,56323376,56324103,56327643	56272492,56298349,56301247,56307699,56310734,56313379,56316689,56323567,56324266,56328092	0.750000
transverse_colon_male_adult_37_years	chr9	123097670	123097683	123097670	+	RAMPAGE_only	5	5	14	1.048408	3.664498	chr9	123097604	123097718	SINE|MIR|MIR3	+	chr9	123073559	123103498	STRG.40757.2	+	123073559,123074284,123076244,123076633,123089757,123090274,123097740,123098714,123099477,123101565,123103090	123073677,123074428,123076286,123076762,123089850,123090385,123097845,123098798,123099549,123101763,123103498	0.928571
transverse_colon_male_adult_37_years	chr1	176162874	176162963	176162936	-	RAMPAGE_only	13	13	29	2.171703	4.450212	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	176116645	176206440	COP1|ENST00000491600.5	-	176116645,176135009,176136487,176149005,176162868,176163814,176168664,176175909,176184632,176206348	176116681,176135086,176136547,176149074,176162988,176163891,176168748,176176007,176184692,176206440	0.758621
transverse_colon_male_adult_37_years	chr16	2669572	2669585	2669582	-	RAMPAGE_only	6	6	20	1.497726	3.892407	chr16	2669524	2670537	LTR|ERVK|LTR13	-	chr16	2663081	2671461	ERVK13-1|ENST00000562807.5	-	2663081,2669410,2671344	2663407,2669561,2671461	0.750000
transverse_colon_male_adult_37_years	chr12	46413622	46413676	46413622	+	High_confidence	7	7	67	5.017383	5.132816	chr12	46413542	46413678	LINE|L2|L2c	-	chr12	46413206	46413989	STRG.50538.1	+	46413206	46413989	0.597015
transverse_colon_male_adult_37_years	chr3	11225963	11226026	11225998	+	High_confidence	7	7	34	2.546135	4.513646	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.882353
transverse_colon_male_adult_37_years	chr7	92579322	92579334	92579322	-	RAMPAGE_only	3	3	9	0.673977	2.500000	chr7	92579142	92579278	SINE|Alu|FLAM_C	-	chr7	92560757	92590070	FAM133B|NM_001288584.1	-	92560757,92566013,92569822,92575770,92577102,92577654,92578149,92578318,92579316,92581505,92589859	92562368,92566061,92569915,92575821,92577195,92577717,92578182,92578393,92579395,92581603,92590070	0.777778
transverse_colon_male_adult_37_years	chr1	159976773	159976861	159976846	+	High_confidence	26	33	146	10.933403	4.794232	chr1	159976818	159976895	SINE|Alu|FLAM_A	+	chr1	159976651	159978699	STRG.4798.1	+	159976651,159978599	159977112,159978699	0.760274
transverse_colon_male_adult_37_years	chr7	6044569	6044613	6044569	-	RAMPAGE_only	4	4	18	1.347954	2.866587	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6038516	6042995	STRG.30987.4	-	6038516,6040891,6042932	6038671,6041219,6042995	0.944444
transverse_colon_male_adult_37_years	chr19	7642274	7642328	7642327	+	High_confidence	9	10	59	4.418293	5.209912	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.711864
transverse_colon_male_adult_37_years	chr5	140700445	140700452	140700445	+	High_confidence	67	85	160	11.981811	5.402717	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.962500
transverse_colon_male_adult_37_years	chr3	47041444	47041485	47041484	-	RAMPAGE_only	3	3	6	0.449318	2.584963	chr3	47041366	47041501	SINE|Alu|AluJr	+	chr3	47016688	47123535	SETD2|ENST00000445387.5	-	47016688,47017637,47019759,47037665,47042560,47046486,47056820,47062162,47064554,47067069,47083719,47086194,47088112,47097954,47101457,47103345,47105996,47113875,47116622,47120181	47017254,47017739,47019840,47037777,47042700,47046621,47057490,47062346,47064630,47067118,47084382,47086314,47088247,47098081,47101555,47103423,47106120,47114004,47116754,47123535	0.833333
transverse_colon_male_adult_37_years	chr2	85354337	85354338	85354337	-	High_confidence	7	7	7	0.524204	2.807355	chr2	85354216	85354326	SINE|MIR|MIR1_Amn	-	chr2	85349431	85354506	RETSAT|ENST00000409984.2	-	85349431,85350039,85350779,85354335	85349581,85350241,85351021,85354506	0.714286
transverse_colon_male_adult_37_years	chr8	142344193	142344212	142344211	-	RAMPAGE_only	3	3	7	0.524204	2.521641	chr8	142344146	142344350	DNA|DNA|UCON8	-	chr8	142212166	142354763	TSNARE1|ENST00000520166.5	-	142212166,142229472,142274780,142284412,142300485,142314383,142315002,142318543,142330900,142331753,142343965,142345742,142354636	142212313,142229579,142274863,142284485,142300647,142314440,142315092,142318634,142330970,142331831,142344472,142345892,142354763	0.857143
transverse_colon_male_adult_37_years	chr16	15740056	15740152	15740077	-	RAMPAGE_only	50	51	157	11.757152	6.562813	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	1.000000
transverse_colon_male_adult_37_years	chr10	132771486	132771502	132771486	+	High_confidence	3	3	10	0.748863	2.646439	chr10	132770921	132771575	DNA|hAT-Charlie|Charlie1a	-	chr10	132771604	132772547	STRG.45225.1	+	132771604	132772547	0.700000
transverse_colon_male_adult_37_years	chr1	148900909	148900918	148900909	+	RAMPAGE_only	7	8	23	1.722385	3.969002	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148889783	148932725	PDE4DIP|ENST00000612094.1	+	148889783,148929196,148932112	148889894,148931923,148932725	0.565217
transverse_colon_male_adult_37_years	chr4	170226587	170226588	170226587	+	High_confidence	69	71	88	6.589996	5.400839	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.670455
transverse_colon_male_adult_37_years	chr18	54945443	54945461	54945443	-	RAMPAGE_only	4	4	12	0.898636	3.188722	chr18	54945305	54945474	SINE|MIR|MIRc	-	chr18	54901510	54942950	CCDC68|ENST00000432185.5	-	54901510,54907785,54917912,54919270,54928799,54934819,54936832,54937956,54940996,54942674	54904415,54907862,54917996,54919376,54928882,54934948,54936958,54938097,54941083,54942950	1.000000
transverse_colon_male_adult_37_years	chr1	2551257	2551258	2551257	-	High_confidence	16	17	22	1.647499	4.186704	chr1	2550899	2551364	LINE|L1|L1ME2	-	chr1	2550073	2551598	TNFRSF14-AS1|ENST00000448624.2	-	2550073,2550991	2550274,2551598	0.727273
transverse_colon_male_adult_37_years	chr17	50737306	50737313	50737312	+	RAMPAGE_only	10	12	27	2.021931	4.403856	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50719598	50743792	LUC7L3|ENST00000504563.6	+	50719598,50736959,50737286,50740305,50741101,50741656,50743705	50719831,50737026,50737479,50740345,50741246,50741731,50743792	0.518519
transverse_colon_male_adult_37_years	chr10	122576694	122576720	122576694	+	High_confidence	2	2	8	0.599091	2.500000	chr10	122576744	122576876	SINE|Alu|FLAM_C	+	chr10	122576320	122643705	STRG.45035.10	+	122576320,122577810,122578717,122579577,122580865,122581792,122582599,122597024,122597973,122598773,122600063,122600990,122601796,122603099,122617227,122618016,122619307,122620252,122621056,122625276,122625932,122629839,122630287,122630960,122631854,122632860,122633190,122635990,122637127,122640039,122643121	122576722,122577840,122578759,122579901,122580895,122581825,122582923,122597054,122598012,122599097,122600093,122601023,122602120,122603129,122617260,122618340,122619337,122620291,122621380,122625303,122625965,122629993,122630490,122631281,122631875,122632890,122633341,122636199,122637312,122640449,122643705	1.000000
transverse_colon_male_adult_37_years	chr16	29736923	29736924	29736923	-	High_confidence	42	51	60	4.493179	5.122995	chr16	29736740	29737042	LTR|ERVL-MaLR|THE1C	-	chr16	29735986	29736906	STRG.60859.1	-	29735986,29736823	29736707,29736906	0.883333
transverse_colon_male_adult_37_years	chr22	18079027	18079119	18079072	+	High_confidence	11	13	53	3.968975	4.706068	chr22	18079052	18079186	SINE|Alu|FLAM_C	+	chr22	18079082	18091019	STRG.71933.4	+	18079082,18079873,18083436,18085111,18087971	18079256,18080014,18083732,18085258,18091019	0.924528
transverse_colon_male_adult_37_years	chr11	117159683	117159723	117159722	+	High_confidence	8	8	32	2.396362	3.539717	chr11	117159461	117159762	SINE|Alu|AluJb	+	chr11	117159386	117161263	PAFAH1B2|ENST00000533677.1	+	117159386,117161144	117160023,117161263	0.906250
transverse_colon_male_adult_37_years	chr2	237579488	237579540	237579517	-	High_confidence	8	8	27	2.021931	3.708048	chr2	237579285	237579685	LTR|ERVL-MaLR|MLT1C	-	chr2	237574325	237579570	RAB17|ENST00000477149.5	-	237574325,237575386,237577256	237575128,237575480,237579570	1.000000
transverse_colon_male_adult_37_years	chr19	49539139	49539152	49539139	+	RAMPAGE_only	3	3	8	0.599091	2.750000	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49527617	49543638	RCN3|ENST00000270645.7	+	49527617,49528466,49534192,49537032,49539118,49542552,49543105	49528058,49528714,49534395,49537205,49539179,49542752,49543638	1.000000
transverse_colon_male_adult_37_years	chr1	6208681	6208682	6208681	-	High_confidence	21	21	21	1.572613	3.553763	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
transverse_colon_male_adult_37_years	chr12	31756998	31756999	31756998	-	RAMPAGE_only	44	53	59	4.418293	5.071214	chr12	31756862	31757481	LTR|ERV1|LTR8B	-	chr12	31751275	31753719	STRG.50170.1	-	31751275,31753147	31751353,31753719	0.627119
transverse_colon_male_adult_37_years	chr8	144490065	144490088	144490079	+	High_confidence	4	4	10	0.748863	2.947703	chr8	144489994	144490130	LINE|L2|L2c	-	chr8	144490093	144496762	PPP1R16A|ENST00000533829.1	+	144490093,144495619,144496460	144490212,144495756,144496762	0.900000
transverse_colon_male_adult_37_years	chr2	168866626	168866638	168866637	+	High_confidence	4	4	8	0.599091	2.750000	chr2	168865486	168867268	LINE|L1|L1P1	+	chr2	168865798	168866978	STRG.11331.1	+	168865798	168866978	0.625000
transverse_colon_male_adult_37_years	chr7	100355171	100355188	100355174	+	RAMPAGE_only	3	3	10	0.748863	3.121928	chr7	100355125	100355232	LINE|L1|L1MD	-	chr7	100353735	100359014	PILRB|ENST00000431140.5	+	100353735,100355142,100356749,100358219,100358898	100354012,100355240,100356883,100358366,100359014	0.700000
transverse_colon_male_adult_37_years	chr2	204544985	204544986	204544985	+	High_confidence	7	7	8	0.599091	2.521641	chr2	204544936	204545029	SINE|MIR|MIR3	+	chr2	204545499	205401107	STRG.12472.1	+	204545499,204686180,204965151,205047580,205104425,205113490,205118920,205121590,205124326,205125608,205158721,205172210,205176444,205185763,205193204,205245777,205300529,205301463,205401012	204546119,204686282,204965323,205047690,205104514,205113577,205119046,205121949,205124466,205125737,205158907,205172381,205176577,205185863,205193320,205245822,205300736,205301701,205401107	0.875000
transverse_colon_male_adult_37_years	chr17	50679419	50679435	50679419	+	High_confidence	5	5	10	0.748863	3.169925	chr17	50679396	50679565	DNA|hAT-Charlie|MER5A1	+	chr17	50679632	50691699	STRG.64381.8	+	50679632,50683609,50683948,50684708,50687535,50691145	50679899,50683756,50684107,50684875,50687619,50691699	0.500000
transverse_colon_male_adult_37_years	chr12	113334806	113334807	113334806	-	High_confidence	4	5	7	0.524204	2.584963	chr12	113334758	113334823	LINE|L2|L2b	-	chr12	113307799	113334833	SLC8B1|ENST00000553238.5	-	113307799,113310233,113315334,113316525,113316941,113318963,113320580,113320849,113321055,113321195,113332722,113334442	113307912,113310355,113315476,113316656,113317001,113319071,113320686,113320907,113321108,113321348,113332960,113334833	0.857143
transverse_colon_male_adult_37_years	chr4	184343966	184343968	184343967	-	RAMPAGE_only	8	15	19	1.422840	3.787144	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184341689	184347912	LINC02363|ENST00000511465.1	-	184341689,184347712	184342053,184347912	0.789474
transverse_colon_male_adult_37_years	chr16	19393734	19393735	19393734	-	High_confidence	28	28	28	2.096817	4.182006	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19392212	19393468	AC130456.7|ENST00000623838.1	-	19392212	19393468	0.642857
transverse_colon_male_adult_37_years	chr10	45594281	45594329	45594315	-	High_confidence	6	6	20	1.497726	3.921928	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45454617	45594491	STRG.42672.1	-	45454617,45459119,45461230,45464238,45489366,45533109,45553111,45594234	45458543,45459267,45461411,45464327,45489417,45533289,45553202,45594491	0.950000
transverse_colon_male_adult_37_years	chr4	6927317	6927319	6927318	+	RAMPAGE_only	3	5	8	0.599091	2.521641	chr4	6927305	6927415	SINE|MIR|MIR	+	chr4	6909844	7033111	TBC1D14|ENST00000409757.8	+	6909844,6923372,6967303,6994183,6996324,6999084,7001144,7004843,7006631,7009876,7010652,7014447,7025003,7030326	6909951,6924111,6967424,6994302,6996407,6999202,7001251,7004924,7006726,7009948,7010781,7014557,7025262,7033111	0.875000
transverse_colon_male_adult_37_years	chr14	68882879	68882918	68882879	-	High_confidence	2	2	9	0.673977	2.500000	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.888889
transverse_colon_male_adult_37_years	chr3	142159976	142160012	142160011	-	RAMPAGE_only	154	154	359	26.884188	3.820868	chr3	142159854	142160147	SINE|Alu|AluSx	-	chr3	142157526	142225607	GK5|NM_001039547.2	-	142157526,142170324,142171418,142172352,142177481,142181460,142182922,142185928,142186193,142186451,142187703,142198801,142204694,142213525,142215598,142225308	142165770,142170458,142171478,142172456,142177576,142181565,142183049,142185989,142186267,142186513,142187779,142198933,142204788,142213601,142215692,142225607	0.983287
transverse_colon_male_adult_37_years	chrX	53585017	53585018	53585017	-	High_confidence	5	5	8	0.599091	2.521641	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53564532	53584416	STRG.73857.3	-	53564532,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185	53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584416	0.750000
transverse_colon_male_adult_37_years	chr1	227142956	227142957	227142956	-	RAMPAGE_only	10	10	11	0.823750	2.646439	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	227035444	227129228	STRG.6591.1	-	227035444,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227112670,227119803,227129108	227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227112913,227119937,227129228	0.818182
transverse_colon_male_adult_37_years	chr19	10825211	10825216	10825211	+	RAMPAGE_only	17	20	30	2.246590	3.978334	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	0.966667
transverse_colon_male_adult_37_years	chr17	30324825	30324828	30324827	-	High_confidence	3	5	8	0.599091	2.807355	chr17	30324732	30324797	LINE|L2|L2b	-	chr17	30315849	30325291	STRG.63188.2	-	30315849,30317192,30318809,30322842,30324815	30316690,30317233,30318913,30323002,30325291	0.875000
transverse_colon_male_adult_37_years	chr9	122164595	122164605	122164595	+	High_confidence	5	6	12	0.898636	2.751629	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122164614	122174568	MORN5|ENST00000418632.1	+	122164614,122166767,122169644,122174495	122164647,122166915,122169756,122174568	0.750000
transverse_colon_male_adult_37_years	chr7	140260463	140260464	140260463	-	High_confidence	4	4	7	0.524204	2.521641	chr7	140260344	140260594	LINE|CR1|CR1_Mam	-	chr7	140090902	140260434	STRG.34493.2	-	140090902,140091803,140094055,140096554,140096898,140097544,140098878,140099898,140101950,140111094,140113490,140119112,140120441,140124620,140126636,140127441,140129496,140133538,140139104,140260371	140091188,140092077,140094138,140096763,140097047,140097642,140099033,140100023,140102160,140111184,140113582,140119219,140120529,140124783,140126823,140127583,140129653,140133656,140139190,140260434	0.714286
transverse_colon_male_adult_37_years	chr10	50082678	50082679	50082678	+	RAMPAGE_only	5	5	8	0.599091	2.807355	chr10	50082483	50082779	SINE|Alu|AluSq	-	chr10	50078125	50133506	WASHC2A|ENST00000399339.6	+	50078125,50078674,50080757,50084071,50085496,50087274,50090775,50091430,50092161,50093267,50093859,50095147,50095598,50097674,50099977,50104041,50106333,50110100,50113894,50117905,50119586,50125112,50125368,50126056,50127159,50127582,50129418,50130900,50132805	50078152,50078737,50080931,50084165,50085558,50087322,50090886,50091518,50092233,50093386,50093917,50095207,50095778,50097802,50100064,50104143,50106465,50110270,50113997,50118058,50119769,50125241,50125449,50126179,50127222,50127795,50130039,50131078,50133506	0.750000
transverse_colon_male_adult_37_years	chr1	1655450	1655481	1655480	-	RAMPAGE_only	9	9	23	1.722385	3.913977	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641870	1657495	STRG.130.5	-	1641870,1642385,1645125,1649498,1652438,1655368,1657255	1642001,1642508,1645262,1649637,1652566,1655484,1657495	0.956522
transverse_colon_male_adult_37_years	chr15	89333860	89333895	89333894	-	High_confidence	3	3	6	0.449318	2.584963	chr15	89333757	89333941	SINE|MIR|MIRc	+	chr15	89330207	89333809	POLG|ENST00000650303.1	-	89330207,89333095	89330276,89333809	1.000000
transverse_colon_male_adult_37_years	chr14	93051015	93051028	93051015	-	RAMPAGE_only	5	5	14	1.048408	2.719295	chr14	93050957	93051066	LINE|L2|L2b	+	chr14	92946330	93036880	ITPK1|ENST00000556954.5	-	92946330,92951945,92958200,92962354,92962750,93016675,93036846	92946493,92952013,92958366,92962395,92962849,93016801,93036880	0.714286
transverse_colon_male_adult_37_years	chr7	150323668	150323751	150323750	-	High_confidence	25	27	94	7.039314	5.334180	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	0.978723
transverse_colon_male_adult_37_years	chr3	195688616	195688694	195688686	+	High_confidence	9	9	42	3.145225	4.820889	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688681	195708807	MUC20-OT1|ENST00000627562.2	+	195688681,195689338,195699029,195701379,195708133	195688797,195689438,195699207,195701495,195708807	0.761905
transverse_colon_male_adult_37_years	chr10	5768371	5768381	5768371	-	RAMPAGE_only	2	2	9	0.673977	3.000000	chr10	5768371	5769005	LINE|L1|L1MB3	+	chr10	5765228	5769389	GDI2|ENST00000479928.1	-	5765228,5766240,5768212	5766152,5766638,5769389	0.888889
transverse_colon_male_adult_37_years	chr3	37058844	37058907	37058886	-	RAMPAGE_only	12	13	40	2.995453	4.458103	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	0.975000
transverse_colon_male_adult_37_years	chr22	24301782	24301787	24301784	+	RAMPAGE_only	11	17	28	2.096817	4.028605	chr22	24301766	24302060	SINE|Alu|AluY	+	chr22	24270897	24442356	SPECC1L-ADORA2A|ENST00000358654.2	+	24270897,24276699,24302194,24313312,24321287,24324219,24328845,24330255,24334409,24338385,24343481,24347085,24363260,24365475,24369217,24411587,24412647,24414533,24433130,24440582	24270983,24276803,24302384,24313466,24322918,24324427,24328919,24330431,24334573,24338477,24343603,24347176,24363344,24365632,24369320,24411704,24412707,24414744,24433736,24442356	0.964286
transverse_colon_male_adult_37_years	chr8	144160991	144161012	144160993	+	High_confidence	3	5	9	0.673977	3.000000	chr8	144160811	144161348	LTR|ERVL-MaLR|MLT1E2	-	chr8	144161024	144261927	MROH1|ENST00000528919.5	+	144161024,144163770,144168294,144179454,144180177,144180424,144190783,144191714,144192308,144199121,144200427,144220599,144223107,144238755,144239034,144239322,144239613,144240100,144240569,144240991,144241394,144242368,144242601,144243493,144243862,144244221,144244443,144245155,144247300,144247566,144248876,144250211,144254812,144255508,144258776,144259239,144259910,144260185,144260676,144260906,144261113,144261283,144261654	144161089,144163848,144168440,144179586,144180340,144180523,144190935,144191855,144192401,144199200,144200541,144220673,144223230,144238863,144239179,144239363,144239755,144240153,144240677,144241111,144241517,144242515,144242628,144243616,144243942,144244336,144244539,144245260,144247436,144247679,144249029,144250366,144254978,144255705,144258914,144259354,144260057,144260374,144260832,144261041,144261216,144261349,144261927	0.666667
transverse_colon_male_adult_37_years	chr17	30329055	30329077	30329055	-	RAMPAGE_only	13	13	29	2.171703	3.208394	chr17	30328997	30329172	LINE|L1|L1ME4b	+	chr17	30328474	30334047	STRG.63188.3	-	30328474,30333999	30329529,30334047	0.896552
transverse_colon_male_adult_37_years	chr1	15758245	15758262	15758245	+	High_confidence	4	4	10	0.748863	2.641604	chr1	15758111	15758311	SINE|MIR|MIRb	-	chr1	15758418	15786594	FBLIM1|ENST00000375766.7	+	15758418,15764495,15764963,15767375,15768527,15770408,15774617,15777169,15784547	15758848,15764685,15765233,15767563,15768630,15770578,15774796,15777287,15786594	0.900000
transverse_colon_male_adult_37_years	chr15	40838732	40838752	40838751	-	RAMPAGE_only	7	7	14	1.048408	3.392747	chr15	40838376	40838886	LTR|ERVL-MaLR|MLT1G1	-	chr15	40838338	40844300	SPINT1-AS1|ENST00000568525.1	-	40838338,40844178	40838686,40844300	0.857143
transverse_colon_male_adult_37_years	chr10	68307082	68307128	68307107	-	High_confidence	10	10	28	2.096817	4.039149	chr10	68307029	68307329	SINE|Alu|AluSx1	-	chr10	68287026	68306879	PBLD|ENST00000277795.8	-	68287026,68292009,68292128,68296885,68306760	68289019,68292039,68292238,68296985,68306879	0.607143
transverse_colon_male_adult_37_years	chr4	148638478	148638498	148638497	-	RAMPAGE_only	5	5	13	0.973522	2.625815	chr4	148638295	148638650	LTR|ERVL-MaLR|THE1A	-	chr4	148636620	148636913	STRG.21750.1	-	148636620	148636913	0.923077
transverse_colon_male_adult_37_years	chr1	204116622	204116632	204116622	+	High_confidence	5	5	9	0.673977	3.169925	chr1	204116612	204116693	LINE|RTE-BovB|MamRTE1	+	chr1	204116506	204122917	SOX13|ENST00000480326.1	+	204116506,204117121,204117592,204121870,204122236,204122853	204116679,204117190,204117707,204121985,204122399,204122917	0.777778
transverse_colon_male_adult_37_years	chr5	176270372	176270373	176270372	+	High_confidence	5	5	8	0.599091	2.750000	chr5	176270405	176271083	LINE|L1|L1M1	+	chr5	176270229	176290209	SIMC1|ENST00000503595.1	+	176270229,176289653	176270520,176290209	0.750000
transverse_colon_male_adult_37_years	chr20	37382699	37382700	37382699	+	High_confidence	9	11	11	0.823750	2.913977	chr20	37382563	37382753	SINE|MIR|MIRb	-	chr20	37382603	37405432	SRC|ENST00000358208.8	+	37382603,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.818182
transverse_colon_male_adult_37_years	chr1	26358913	26358930	26358929	-	RAMPAGE_only	4	4	8	0.599091	3.000000	chr1	26358817	26358907	SINE|MIR|MIR3	-	chr1	26321697	26360080	CRYBG2|ENST00000475866.3	-	26321697,26322163,26324151,26328208,26328733,26331488,26336094,26336337,26336605,26336840,26337252,26337537,26338011,26338350,26339289,26342753,26343046,26343245,26343744,26354045,26356458,26359936	26322056,26322323,26324310,26328332,26328873,26331618,26336207,26336370,26336732,26336980,26337379,26337674,26338047,26338477,26339429,26342883,26343159,26343293,26346712,26354785,26356522,26360080	0.750000
transverse_colon_male_adult_37_years	chr19	11110578	11110590	11110578	+	High_confidence	6	6	10	0.748863	2.846439	chr19	11110485	11110590	SINE|Alu|AluSc8	+	chr19	11110712	11113481	LDLR|ENST00000560173.1	+	11110712,11111513,11113277	11110771,11111639,11113481	0.600000
transverse_colon_male_adult_37_years	chr11	129839602	129839633	129839602	+	RAMPAGE_only	7	7	13	0.973522	2.873141	chr11	129839532	129839834	SINE|Alu|AluJb	-	chr11	129850331	129859215	TMEM45B|ENST00000524567.1	+	129850331,129852474,129854609,129855707,129857312,129858573	129850604,129852660,129854816,129855892,129857458,129859215	0.538462
transverse_colon_male_adult_37_years	chr1	43537632	43537641	43537640	+	High_confidence	12	12	24	1.797272	4.061482	chr1	43537442	43537857	LINE|L2|L2b	-	chr1	43538197	43580078	PTPRF|ENST00000372405.1	+	43538197,43545030,43553491,43553799,43569589,43578809	43538277,43545166,43553637,43553941,43569778,43580078	0.625000
transverse_colon_male_adult_37_years	chr17	1115377	1115409	1115389	-	High_confidence	5	11	29	2.171703	4.450212	chr17	1115307	1115433	LINE|L2|L2b	+	chr17	1072732	1115436	ABR|ENST00000570441.5	-	1072732,1073624,1079329,1083519,1091664,1100636,1115275	1072754,1073677,1079390,1083627,1091850,1100735,1115436	0.862069
transverse_colon_male_adult_37_years	chr2	127630663	127630664	127630663	+	RAMPAGE_only	15	15	17	1.273067	3.499228	chr2	127630581	127630704	SINE|MIR|MIR3	-	chr2	127626630	127637696	STRG.10341.8	+	127626630,127628371,127629644,127630777,127631205,127631599,127632245,127633257,127634175,127634595,127635119,127635721,127636207,127636544,127636793,127637315	127627092,127628535,127629826,127630908,127631363,127631753,127632401,127633363,127634289,127634683,127635226,127635907,127636324,127636628,127636913,127637696	0.823529
transverse_colon_male_adult_37_years	chrX	53634365	53634422	53634365	-	RAMPAGE_only	2	3	14	1.048408	3.182006	chrX	53634324	53634391	SINE|Alu|AluJb	+	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	1.000000
transverse_colon_male_adult_37_years	chr9	22113544	22113547	22113546	+	High_confidence	22	43	46	3.444771	4.990105	chr9	22113591	22113733	SINE|MIR|MIRc	+	chr9	22113677	22121097	CDKN2B-AS1|ENST00000422420.1	+	22113677,22120199,22120503	22113799,22120410,22121097	0.717391
transverse_colon_male_adult_37_years	chr2	113704173	113704174	113704173	-	High_confidence	10	11	11	0.823750	2.646439	chr2	113703868	113704969	LTR|ERV1|LTR12E	-	chr2	113677701	113704078	AC017074.1|ENST00000424612.1	-	113677701,113688160,113703696	113677783,113688257,113704078	0.909091
transverse_colon_male_adult_37_years	chr1	93582539	93582552	93582545	-	RAMPAGE_only	3	3	10	0.748863	2.947703	chr1	93582523	93582592	LINE|L2|L2	+	chr1	93561786	93585082	BCAR3|ENST00000539242.5	-	93561786,93567278,93567739,93571669,93576013,93582300,93584017,93584971	93562419,93567491,93567851,93571841,93576129,93582953,93584121,93585082	0.900000
transverse_colon_male_adult_37_years	chr2	69567126	69567163	69567162	-	RAMPAGE_only	2	2	7	0.524204	2.807355	chr2	69566977	69567521	LINE|L2|L2b	+	chr2	69461399	69643654	AAK1|ENST00000409068.5	-	69461399,69509250,69514470,69518953,69520833,69525032,69527215,69530007,69530624,69532040,69542522,69544435,69556859,69642877,69643574	69461705,69509460,69514749,69519240,69520988,69525112,69527319,69530140,69530706,69532162,69542665,69544544,69556978,69643274,69643654	0.857143
transverse_colon_male_adult_37_years	chrX	66258750	66258765	66258750	+	RAMPAGE_only	5	5	11	0.823750	2.921928	chrX	66258313	66258772	LINE|L2|L2c	-	chrX	66256821	66267383	STRG.74161.5	+	66256821,66258839,66260099,66263643,66266439	66257411,66258979,66260262,66263688,66267383	0.909091
transverse_colon_male_adult_37_years	chr12	26832797	26832820	26832797	-	High_confidence	2	3	8	0.599091	2.750000	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26716161	26832786	ITPR2|ENST00000545235.1	-	26716161,26722396,26724655,26725649,26832689	26716242,26722555,26724742,26725765,26832786	0.875000
transverse_colon_male_adult_37_years	chr12	4720419	4720430	4720419	+	High_confidence	9	9	15	1.123295	3.521641	chr12	4720007	4720593	LTR|ERVK|LTR14C	-	chr12	4720340	4772726	GALNT8|ENST00000252318.6	+	4720340,4726531,4739162,4744516,4745428,4746143,4760957,4763252,4763951,4765378,4772444	4720888,4726829,4739329,4744700,4745626,4746258,4761143,4763390,4764047,4765546,4772726	0.933333
transverse_colon_male_adult_37_years	chr21	41426089	41426123	41426089	+	High_confidence	2	2	11	0.823750	3.121928	chr21	41426026	41426113	DNA|hAT-Charlie|MER5A	-	chr21	41426146	41429921	STRG.71716.3	+	41426146,41427205,41427754	41426263,41427304,41429921	0.636364
transverse_colon_male_adult_37_years	chr12	123390725	123390726	123390725	+	High_confidence	6	6	8	0.599091	2.750000	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123390379	123408242	STRG.52761.1	+	123390379,123395046,123396344,123403572,123404883,123407492	123390786,123395266,123396432,123403632,123405074,123408242	1.000000
transverse_colon_male_adult_37_years	chrY	3003053	3003067	3003053	+	High_confidence	5	5	9	0.673977	2.947703	chrY	3002992	3005218	LTR|ERV1|HERV3-int	+	chrY	3002997	3102272	LINC00278|ENST00000425031.1	+	3002997,3079283,3096994,3102084	3003217,3079341,3097056,3102272	0.666667
transverse_colon_male_adult_37_years	chr3	51986165	51986192	51986165	+	High_confidence	12	12	28	2.096817	4.085055	chr3	51986054	51986192	SINE|MIR|MIR1_Amn	-	chr3	51986209	51987453	ACY1|ENST00000464587.2	+	51986209,51986414,51986604,51986987,51987146,51987308	51986331,51986504,51986661,51987061,51987196,51987453	0.785714
transverse_colon_male_adult_37_years	chr1	67138988	67139011	67138988	+	High_confidence	2	2	12	0.898636	3.418296	chr1	67139035	67139205	LTR|ERVL-MaLR|MLT1K	+	chr1	67138906	67259167	IL23R|ENST00000637002.1	+	67138906,67168091,67169341,67182835,67200741,67206909,67219573,67236712,67240178,67255836,67258477	67139161,67168190,67169638,67182959,67200897,67207055,67219730,67236802,67240281,67255927,67259167	0.750000
transverse_colon_male_adult_37_years	chr20	46356648	46356698	46356697	-	RAMPAGE_only	4	4	15	1.123295	3.240224	chr20	46356695	46356868	DNA|hAT|MamRep38	-	chr20	46350770	46357701	SLC35C2|ENST00000487729.5	-	46350770,46352050,46354881,46355072,46355801,46356573,46357622	46350890,46352226,46354965,46355279,46355874,46356637,46357701	0.800000
transverse_colon_male_adult_37_years	chr4	142474407	142474443	142474442	-	High_confidence	3	3	6	0.449318	2.584963	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.666667
transverse_colon_male_adult_37_years	chr11	58578102	58578131	58578102	-	High_confidence	12	14	55	4.118748	5.081470	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58527437	58578084	STRG.46725.1	-	58527437,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58577985	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578084	0.745455
transverse_colon_male_adult_37_years	chr19	3743881	3743885	3743884	+	High_confidence	13	13	22	1.647499	3.346439	chr19	3743650	3743892	LTR|ERVL-MaLR|MLT1J	-	chr19	3743662	3747894	TJP3|ENST00000591493.1	+	3743662,3746010,3746484,3746775,3747793	3744034,3746081,3746695,3746876,3747894	0.818182
transverse_colon_male_adult_37_years	chr8	27977120	27977126	27977120	-	RAMPAGE_only	3	4	9	0.673977	2.750000	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904368	27992624	SCARA5|ENST00000524352.5	-	27904368,27907147,27909662,27921570,27966413,27987503,27992256	27904834,27907246,27909743,27922245,27966542,27987630,27992624	0.777778
transverse_colon_male_adult_37_years	chr8	142344379	142344380	142344379	-	RAMPAGE_only	16	16	18	1.347954	3.947703	chr8	142344146	142344350	DNA|DNA|UCON8	-	chr8	142212166	142354763	TSNARE1|ENST00000520166.5	-	142212166,142229472,142274780,142284412,142300485,142314383,142315002,142318543,142330900,142331753,142343965,142345742,142354636	142212313,142229579,142274863,142284485,142300647,142314440,142315092,142318634,142330970,142331831,142344472,142345892,142354763	0.888889
transverse_colon_male_adult_37_years	chr12	6493553	6493591	6493553	-	High_confidence	4	5	20	1.497726	4.084184	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	1.000000
transverse_colon_male_adult_37_years	chr12	32473316	32473410	32473352	+	High_confidence	21	21	83	6.215564	4.901019	chr12	32472106	32473651	LTR|ERV1|LTR12C	+	chr12	32472837	32473714	STRG.50265.1	+	32472837	32473714	0.951807
transverse_colon_male_adult_37_years	chr12	57050719	57050720	57050719	-	High_confidence	16	18	18	1.347954	3.836592	chr12	57050705	57050920	SINE|MIR|MIRc	-	chr12	57028516	57050765	MYO1A|NM_001256041.1	-	57028516,57029131,57029434,57029739,57030209,57031039,57036306,57036771,57036941,57037547,57037868,57038411,57038808,57039211,57041183,57041431,57043071,57043239,57043855,57044105,57046551,57046862,57047060,57047302,57047626,57047988,57048209,57049886,57050717	57028881,57029259,57029587,57029872,57030316,57031174,57036381,57036840,57037091,57037641,57038069,57038638,57039009,57039274,57041288,57041497,57043158,57043358,57044003,57044209,57046650,57046926,57047107,57047407,57047721,57048104,57048343,57050106,57050765	0.666667
transverse_colon_male_adult_37_years	chr11	57793672	57793807	57793743	+	RAMPAGE_only	10	10	49	3.669430	4.621115	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57781602	57796584	CTNND1|ENST00000530068.5	+	57781602,57791491,57794009,57795576,57796456	57781646,57791673,57794081,57795729,57796584	0.755102
transverse_colon_male_adult_37_years	chr16	27330147	27330148	27330147	+	RAMPAGE_only	15	15	15	1.123295	3.589898	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27320240	27346618	STRG.60645.4	+	27320240,27330065,27340185,27342120,27344593,27346466	27320290,27330198,27340273,27342259,27345020,27346618	0.800000
transverse_colon_male_adult_37_years	chr6	44126682	44126685	44126682	+	High_confidence	3	3	9	0.673977	2.725481	chr6	44126578	44126686	LINE|CR1|X7A_LINE	-	chr6	44126913	44155519	TMEM63B|NM_001318792.1	+	44126913,44134560,44135016,44135327,44136348,44138479,44139466,44139707,44140251,44141027,44146846,44147376,44148251,44148512,44148791,44149858,44150223,44150563,44151845,44152592,44153675,44154072,44154364,44154691	44127072,44134743,44135096,44135366,44136439,44138517,44139609,44139759,44140360,44141098,44146927,44147500,44148385,44148650,44148945,44149965,44150310,44150629,44152008,44152698,44153843,44154188,44154445,44155519	0.777778
transverse_colon_male_adult_37_years	chr4	174535158	174535182	174535158	+	High_confidence	3	3	9	0.673977	2.947703	chr4	174534995	174535543	LINE|CR1|L3	+	chr4	174535267	174535537	STRG.22235.1	+	174535267	174535537	0.555556
transverse_colon_male_adult_37_years	chr12	109113107	109113115	109113107	+	RAMPAGE_only	7	7	17	1.273067	3.410417	chr12	109112836	109113146	DNA|hAT-Charlie|MER58B	-	chr12	109111217	109125594	AC007637.1|ENST00000541704.2	+	109111217,109113094,109125260	109111472,109113415,109125594	0.588235
transverse_colon_male_adult_37_years	chr1	156252925	156252931	156252925	-	High_confidence	6	6	12	0.898636	2.845351	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.916667
transverse_colon_male_adult_37_years	chr12	109179243	109179288	109179281	+	RAMPAGE_only	6	6	25	1.872158	3.849224	chr12	109179316	109179444	LINE|CR1|L3	+	chr12	109139396	109260147	ACACB|ENST00000377854.9	+	109139396,109166860,109167895,109171804,109172274,109174131,109175930,109176152,109179087,109179916,109185578,109187998,109191612,109191846,109193647,109197007,109199401,109201566,109206709,109209164,109212835,109216617,109216795,109222506,109222798,109223814,109227370,109232668,109233747,109233937,109235312,109235605,109237164,109239829,109241077,109242436,109245625,109246178,109247605,109249983,109252045,109253014,109254213,109256139,109258267,109258972,109260064	109140058,109166993,109168034,109171914,109172356,109174230,109176040,109176263,109179297,109180087,109185740,109188162,109191763,109191950,109193729,109197153,109199552,109201701,109206856,109209353,109212936,109216706,109216920,109222620,109222912,109223904,109227489,109232806,109233847,109234045,109235369,109235647,109237380,109239985,109241281,109242592,109245748,109246448,109247703,109250104,109252156,109253158,109254334,109256236,109258364,109259108,109260147	0.880000
transverse_colon_male_adult_37_years	chr19	51886861	51886881	51886880	-	High_confidence	4	4	14	1.048408	3.546594	chr19	51886663	51886875	SINE|MIR|MIRb	-	chr19	51880697	51886465	ZNF577|ENST00000639183.1	-	51880697,51886115	51880877,51886465	0.500000
transverse_colon_male_adult_37_years	chr4	39627120	39627121	39627120	-	High_confidence	16	17	20	1.497726	3.932138	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.900000
transverse_colon_male_adult_37_years	chr2	159428356	159428357	159428356	-	RAMPAGE_only	25	27	37	2.770794	4.764858	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159386359	159433121	STRG.10997.1	-	159386359,159389344,159395768,159397344,159398828,159400598,159404848,159405021,159412334,159428310,159429199,159430862,159432756	159386607,159389485,159395834,159397389,159398894,159400664,159404910,159405114,159412545,159428419,159429260,159431156,159433121	0.918919
transverse_colon_male_adult_37_years	chr8	144490184	144490185	144490184	+	High_confidence	11	12	15	1.123295	2.896292	chr8	144490224	144490523	SINE|Alu|AluSx1	+	chr8	144490093	144496762	PPP1R16A|ENST00000533829.1	+	144490093,144495619,144496460	144490212,144495756,144496762	0.866667
transverse_colon_male_adult_37_years	chr6	36498005	36498006	36498005	-	RAMPAGE_only	24	24	24	1.797272	2.970176	chr6	36497934	36498231	SINE|Alu|AluJb	-	chr6	36494694	36547452	STRG.27902.2	-	36494694,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540204,36547452	1.000000
transverse_colon_male_adult_37_years	chr1	39310282	39310337	39310282	+	RAMPAGE_only	8	9	34	2.546135	4.477025	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	1.000000
transverse_colon_male_adult_37_years	chr3	39407652	39407683	39407671	+	High_confidence	3	3	12	0.898636	2.918296	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.833333
transverse_colon_male_adult_37_years	chr11	134467541	134467542	134467541	+	High_confidence	7	8	9	0.673977	3.000000	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134467278	134467987	STRG.48922.1	+	134467278,134467864	134467615,134467987	0.666667
transverse_colon_male_adult_37_years	chr22	23705433	23705444	23705433	-	RAMPAGE_only	8	8	16	1.198181	2.523231	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23695146	23698001	STRG.72107.10	-	23695146,23697882	23695517,23698001	0.812500
transverse_colon_male_adult_37_years	chr16	21048703	21048704	21048703	-	RAMPAGE_only	34	35	44	3.294998	4.591979	chr16	21042672	21048703	LINE|L1|L1PA2	-	chr16	20996858	21063000	DNAH3|ENST00000572640.5	-	20996858,21000223,21003103,21019623,21021970,21024595,21027026,21031044,21033973,21036713,21037760,21039851,21042026,21049568,21049909,21051669,21054419,21058085,21060263,21062481,21062771	20997462,21000518,21003207,21019869,21022100,21024701,21027127,21031286,21034085,21036848,21037980,21039943,21042203,21049682,21050018,21051868,21054534,21058196,21060356,21062683,21063000	0.886364
transverse_colon_male_adult_37_years	chrX	114059277	114059289	114059288	-	High_confidence	9	9	25	1.872158	4.083856	chrX	114059021	114059467	LTR|ERV1|LTR2	-	chrX	113961710	114059289	XACT|ENST00000649506.1	-	113961710,114042367,114059003	113963599,114042484,114059289	0.920000
transverse_colon_male_adult_37_years	chr19	1917612	1917613	1917612	+	RAMPAGE_only	6	6	6	0.449318	2.584963	chr19	1917314	1917635	LTR|ERVL-MaLR|MLT1D	-	chr19	1914520	1924701	SCAMP4|ENST00000621748.1	+	1914520,1914978,1917693,1918126,1918888,1923069,1924107	1914544,1915026,1917822,1918283,1918990,1923187,1924701	0.500000
transverse_colon_male_adult_37_years	chr12	120429618	120429629	120429618	+	RAMPAGE_only	5	7	10	0.748863	2.725481	chr12	120429527	120429802	LINE|L2|L2b	-	chr12	120438089	120440742	COX6A1|NM_004373.3	+	120438089,120438378,120440453	120438229,120438521,120440742	0.800000
transverse_colon_male_adult_37_years	chr21	22062115	22062169	22062168	-	High_confidence	5	6	18	1.347954	4.087463	chr21	22062002	22062278	LINE|L2|L2a	+	chr21	22037174	22062641	STRG.71352.2	-	22037174,22062008	22041435,22062641	0.777778
transverse_colon_male_adult_37_years	chr12	91179462	91179549	91179462	-	High_confidence	45	47	226	16.924308	6.235906	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.738938
transverse_colon_male_adult_37_years	chr11	134467260	134467265	134467264	+	High_confidence	21	21	41	3.070339	4.552197	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134467278	134467987	STRG.48922.1	+	134467278,134467864	134467615,134467987	0.756098
transverse_colon_male_adult_37_years	chr13	22040971	22040972	22040971	+	High_confidence	11	13	16	1.198181	3.773557	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.937500
transverse_colon_male_adult_37_years	chr3	195689406	195689422	195689406	+	High_confidence	6	6	15	1.123295	3.521641	chr3	195689376	195689522	LINE|L1|L1MC5a	+	chr3	195689424	195696554	MUC20-OT1|ENST00000626677.1	+	195689424,195696360	195689608,195696554	0.533333
transverse_colon_male_adult_37_years	chr1	1714956	1714983	1714956	-	High_confidence	2	2	8	0.599091	2.750000	chr1	1714539	1715181	LINE|L1|L1M4a1	-	chr1	1714618	1715243	STRG.147.1	-	1714618	1715243	0.875000
transverse_colon_male_adult_37_years	chrX	136922441	136922461	136922451	+	RAMPAGE_only	2	2	8	0.599091	2.807355	chrX	136921248	136922756	LTR|ERV1|LTR12C	+	chrX	136909394	136993655	AL390879.1|ENST00000424306.5	+	136909394,136921243,136925246,136993485	136909780,136922776,136925379,136993655	0.875000
transverse_colon_male_adult_37_years	chr12	20668975	20669063	20668980	+	RAMPAGE_only	81	81	186	13.928855	5.757520	chr12	20667835	20673859	LINE|L1|L1PA3	+	chr12	19816161	20671476	STRG.49868.1	+	19816161,20669118	19816203,20671476	0.725806
transverse_colon_male_adult_37_years	chr16	23354923	23354952	23354923	+	High_confidence	7	7	13	0.973522	2.931209	chr16	23354922	23355096	LTR|ERVL|LTR16A1	-	chr16	23355416	23380803	STRG.60523.5	+	23355416,23367855,23375737,23377164,23377328,23378705,23380093,23380420	23355489,23367959,23375855,23377240,23377386,23378767,23380169,23380803	0.538462
transverse_colon_male_adult_37_years	chr16	81181295	81181331	81181330	-	High_confidence	2	2	7	0.524204	2.584963	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.857143
transverse_colon_male_adult_37_years	chr6	79631434	79631468	79631441	+	High_confidence	4	4	18	1.347954	3.263933	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.944444
transverse_colon_male_adult_37_years	chr3	142684017	142684081	142684055	+	RAMPAGE_only	6	8	54	4.043861	5.074241	chr3	142683987	142684094	LINE|RTE-BovB|MamRTE1	+	chr3	142656896	142713664	PLS1|NM_001172312.1	+	142656896,142664201,142669389,142670992,142676156,142678031,142684005,142684252,142686283,142689617,142694468,142697952,142703867,142704462,142711500,142711871	142657180,142664307,142669553,142671122,142676289,142678113,142684171,142684395,142686376,142689813,142694547,142698067,142704001,142704586,142711625,142713664	0.925926
transverse_colon_male_adult_37_years	chr20	37345083	37345133	37345126	+	High_confidence	10	10	44	3.294998	4.845351	chr20	37345047	37345146	SINE|MIR|MIR3	+	chr20	37344724	37394053	STRG.70399.4	+	37344724,37365203,37382618,37384149,37386074,37393894	37344887,37365277,37382786,37384403,37386174,37394053	0.568182
transverse_colon_male_adult_37_years	chr14	100138761	100138795	100138763	+	High_confidence	5	8	22	1.647499	3.351953	chr14	100138741	100139027	LINE|L2|L2b	-	chr14	100138811	100144232	EVL|ENST00000555606.5	+	100138811,100139333,100141179,100141735,100143700,100144013	100138897,100139369,100141246,100141793,100143890,100144232	0.590909
transverse_colon_male_adult_37_years	chr20	43583261	43583283	43583261	+	RAMPAGE_only	8	8	15	1.123295	3.240224	chr20	43583305	43583401	SINE|MIR|MIRc	+	chr20	43566096	43585633	SGK2|NM_016276.3	+	43566096,43567067,43567664,43567915,43569384,43570616,43571023,43572050,43574908,43576223,43579971,43584851	43566531,43567117,43567722,43567999,43569516,43570729,43571060,43572137,43575004,43576379,43580061,43585633	0.733333
transverse_colon_male_adult_37_years	chr12	122513823	122513876	122513875	-	High_confidence	4	4	14	1.048408	3.378783	chr12	122513839	122514036	SINE|Alu|AluJo	+	chr12	122505329	122513917	RSRC2|ENST00000392442.6	-	122505329,122506833,122508217,122511108,122513766	122505706,122506923,122508447,122511188,122513917	1.000000
transverse_colon_male_adult_37_years	chr22	17101901	17101923	17101901	+	RAMPAGE_only	4	4	11	0.823750	2.845351	chr22	17101933	17101968	LINE|Penelope|Penelope1_Vert	+	chr22	17084958	17115694	IL17RA|ENST00000612619.1	+	17084958,17097061,17097796,17098774,17100354,17101995,17102138,17103493,17104725,17105590,17107726,17108306	17085229,17097086,17097943,17098887,17100481,17102043,17102302,17103577,17104810,17105602,17107768,17115694	0.545455
transverse_colon_male_adult_37_years	chr11	3093151	3093152	3093151	-	RAMPAGE_only	8	8	9	0.673977	2.500000	chr11	3093151	3093289	LINE|CR1|L3	-	chr11	3087115	3094879	OSBPL5|ENST00000478260.5	-	3087115,3089845,3090557,3092431,3092866,3093526,3093745,3094236	3088343,3089948,3090696,3092558,3093052,3093663,3093835,3094879	0.888889
transverse_colon_male_adult_37_years	chr4	79197521	79197539	79197521	+	High_confidence	3	4	12	0.898636	3.251629	chr4	79197378	79197549	LTR|ERVL-MaLR|MLT1H	+	chr4	79197540	79308655	LINC01088|ENST00000512130.5	+	79197540,79306690,79308272	79197644,79306728,79308655	0.833333
transverse_colon_male_adult_37_years	chr1	29165963	29166019	29166018	-	RAMPAGE_only	5	5	19	1.422840	3.681881	chr1	29165912	29166153	SINE|tRNA-RTE|MamSINE1	-	chr1	29154696	29167428	STRG.1217.1	-	29154696,29159373,29160374,29165889,29166728	29154910,29159486,29160517,29166064,29167428	0.842105
transverse_colon_male_adult_37_years	chr2	240617012	240617033	240617012	+	High_confidence	5	5	13	0.973522	3.084963	chr2	240616628	240617072	LTR|ERVL-MaLR|MLT1F2	+	chr2	240616850	240631170	STRG.13222.3	+	240616850,240618887,240627659	240617393,240619031,240631170	0.923077
transverse_colon_male_adult_37_years	chr11	129839656	129839674	129839656	+	RAMPAGE_only	2	2	8	0.599091	2.750000	chr11	129839532	129839834	SINE|Alu|AluJb	-	chr11	129850331	129859215	TMEM45B|ENST00000524567.1	+	129850331,129852474,129854609,129855707,129857312,129858573	129850604,129852660,129854816,129855892,129857458,129859215	1.000000
transverse_colon_male_adult_37_years	chr3	197299291	197299320	197299319	-	High_confidence	3	3	9	0.673977	2.947703	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.666667
transverse_colon_male_adult_37_years	chr5	82279590	82279591	82279590	+	High_confidence	9	9	10	0.748863	2.725481	chr5	82279305	82279599	LINE|L2|L2a	-	chr5	82279461	82318803	ATP6AP1L|ENST00000380167.8	+	82279461,82280959,82295492,82303486,82303773,82304614,82304933,82310156,82312610,82317997	82279878,82281011,82295544,82303527,82303832,82304850,82305481,82310207,82312851,82318803	0.800000
transverse_colon_male_adult_37_years	chr1	43525091	43525092	43525091	+	High_confidence	199	199	275	20.593738	6.698728	chr1	43524527	43525317	LINE|L2|L2c	-	chr1	43525186	43553519	PTPRF|ENST00000496043.5	+	43525186,43528656,43538197,43545030,43553491	43525257,43528756,43538277,43545166,43553519	0.825455
transverse_colon_male_adult_37_years	chr14	34536102	34536110	34536102	-	High_confidence	3	3	9	0.673977	2.500000	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.555556
transverse_colon_male_adult_37_years	chr5	148104623	148104624	148104623	+	RAMPAGE_only	12	12	14	1.048408	3.700440	chr5	148104613	148104913	SINE|Alu|AluSx3	+	chr5	148101838	148114388	STRG.26004.1	+	148101838,148104951,148107036,148108752,148111767,148112867,148114361	148101908,148105000,148107164,148108837,148111895,148112934,148114388	0.785714
transverse_colon_male_adult_37_years	chr1	205512316	205512317	205512316	+	RAMPAGE_only	9	9	10	0.748863	2.947703	chr1	205512088	205512401	LINE|L2|L2	-	chr1	205504801	205527825	CDK18|ENST00000419301.1	+	205504801,205523146,205523482,205524231,205525138,205526064,205526366,205526774,205527793	205504878,205523297,205523715,205524357,205525195,205526179,205526461,205526837,205527825	0.700000
transverse_colon_male_adult_37_years	chr11	64836631	64836634	64836631	-	High_confidence	3	3	7	0.524204	2.584963	chr11	64836620	64836693	SINE|MIR|MIRc	-	chr11	64833279	64836619	STRG.47011.4	-	64833279,64833599,64833737,64833924,64834265,64834848,64835046,64835346,64835761,64836116,64836426	64833336,64833659,64833836,64833977,64834577,64834963,64835153,64835621,64835851,64836296,64836619	0.714286
transverse_colon_male_adult_37_years	chr1	1756660	1756730	1756729	-	RAMPAGE_only	4	4	15	1.123295	3.324863	chr1	1756708	1756827	LTR|ERVL-MaLR|MSTD	+	chr1	1756003	1779962	NADK|ENST00000492845.6	-	1756003,1756502,1757180,1761951,1765227,1779904	1756343,1756608,1757310,1762035,1765446,1779962	0.733333
transverse_colon_male_adult_37_years	chr9	114394382	114394413	114394412	-	High_confidence	9	13	20	1.497726	3.155565	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	0.950000
transverse_colon_male_adult_37_years	chr3	33838228	33838257	33838256	+	RAMPAGE_only	7	7	18	1.347954	3.836592	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.833333
transverse_colon_male_adult_37_years	chr9	128113478	128113479	128113478	-	RAMPAGE_only	5	5	7	0.524204	2.521641	chr9	128113305	128113520	LINE|L2|L2a	+	chr9	128112521	128118042	STRG.41084.3	-	128112521,128117709,128117922	128115289,128117835,128118042	0.571429
transverse_colon_male_adult_37_years	chr17	47067498	47067534	47067498	-	High_confidence	19	20	97	7.263973	5.066819	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.917526
transverse_colon_male_adult_37_years	chr9	131454973	131454998	131454997	+	RAMPAGE_only	3	3	9	0.673977	3.000000	chr9	131454923	131455021	SINE|Alu|AluSx3	-	chr9	131447088	131476557	STRG.41236.1	+	131447088,131447661,131455075,131459163,131464762,131467562,131470787,131473507,131474453	131447206,131447804,131455166,131459356,131465078,131467753,131470983,131473724,131476557	0.666667
transverse_colon_male_adult_37_years	chr9	74848113	74848181	74848113	-	RAMPAGE_only	13	14	70	5.242042	5.327737	chr9	74847872	74848586	DNA|TcMar-Tigger|MER44C	-	chr9	74722494	74887347	TRPM6|ENST00000361255.7	-	74722494,74728238,74732684,74738406,74739366,74739722,74742560,74744094,74747888,74750663,74752276,74755352,74761695,74761998,74771702,74775882,74782361,74782678,74785873,74788613,74792623,74796740,74800253,74801897,74803793,74808033,74810814,74812298,74816668,74816891,74820303,74821668,74827777,74833997,74840023,74842165,74855526,74858668,74887230	74724746,74728345,74732736,74738612,74739449,74740009,74742626,74744145,74747914,74750722,74752368,74755473,74761808,74763134,74771835,74776076,74782476,74782853,74786125,74788742,74792770,74796893,74800482,74802175,74803886,74808174,74810868,74812433,74816769,74816964,74820427,74821837,74827949,74834122,74840237,74842343,74855565,74858748,74887347	0.557143
transverse_colon_male_adult_54_years	chr2	241983239	241983257	241983249	+	RAMPAGE_only	21	21	54	4.350375	4.786896	chr2	241983211	241983626	LINE|L1|L1ME2	+	chr2	241989674	242001131	STRG.15989.1	+	241989674	242001131	0.629630
transverse_colon_male_adult_54_years	chr4	148680527	148680547	148680546	-	High_confidence	1260	1301	2253	181.507313	6.589830	chr4	148680464	148680625	DNA|hAT-Charlie|MER5A	+	chr4	148610854	148680557	STRG.26731.6	-	148610854,148644525	148644505,148680557	0.976032
transverse_colon_male_adult_54_years	chr3	53371324	53371326	53371324	-	High_confidence	77	95	123	9.909188	5.977172	chr3	53365276	53371325	LINE|L1|L1PA2	-	chr3	53350602	53371328	STRG.18146.1	-	53350602,53362004,53371227	53350879,53362107,53371328	0.634146
transverse_colon_male_adult_54_years	chr11	26704383	26704392	26704383	-	RAMPAGE_only	5	6	9	0.725063	2.947703	chr11	26704039	26704370	LINE|L2|L2b	-	chr11	26691657	26721999	SLC5A12|ENST00000280467.10	-	26691657,26697163,26698405,26703530,26703792,26709311,26711306,26712640,26721375	26692601,26697252,26698535,26703671,26703947,26709379,26711358,26712706,26721999	1.000000
transverse_colon_male_adult_54_years	chr15	85433962	85433963	85433962	+	RAMPAGE_only	5	6	6	0.483375	2.584963	chr15	85433963	85439965	LINE|L1|L1PA2	+	chr15	85380755	85613683	STRG.72394.3	+	85380755,85485709,85521427,85533583,85543771,85575130,85578929,85585701,85603277	85380798,85485753,85521575,85533880,85543955,85575329,85582107,85585823,85613683	0.666667
transverse_colon_male_adult_54_years	chr18	80148048	80148049	80148048	+	High_confidence	49	52	54	4.350375	4.842186	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.740741
transverse_colon_male_adult_54_years	chr7	104926606	104926641	104926626	-	High_confidence	6	6	19	1.530688	3.947703	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104916226	104926625	STRG.42431.2	-	104916226,104920384,104926452	104917980,104920425,104926625	0.736842
transverse_colon_male_adult_54_years	chr1	205512316	205512317	205512316	+	RAMPAGE_only	10	10	10	0.805625	2.646439	chr1	205512088	205512401	LINE|L2|L2	-	chr1	205504801	205527825	CDK18|ENST00000419301.1	+	205504801,205523146,205523482,205524231,205525138,205526064,205526366,205526774,205527793	205504878,205523297,205523715,205524357,205525195,205526179,205526461,205526837,205527825	1.000000
transverse_colon_male_adult_54_years	chrY	3002893	3002901	3002893	+	High_confidence	468	473	774	62.355375	6.440042	chrY	3002436	3002992	LTR|ERV1|LTR4	+	chrY	3002997	3116719	STRG.92332.6	+	3002997,3096994,3111282	3079341,3102194,3116719	0.990956
transverse_colon_male_adult_54_years	chr11	63563627	63563665	63563627	-	High_confidence	17	17	65	5.236563	5.102761	chr11	63563436	63563737	SINE|Alu|AluY	+	chr11	63552769	63563383	HRASLS2|ENST00000255695.1	-	63552769,63558391,63560084,63563315	63553065,63558660,63560193,63563383	0.907692
transverse_colon_male_adult_54_years	chr11	67884427	67884448	67884427	+	RAMPAGE_only	28	28	73	5.881063	5.129733	chr11	67882928	67885775	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.739726
transverse_colon_male_adult_54_years	chr11	114651223	114651269	114651223	-	High_confidence	2	2	14	1.127875	2.896292	chr11	114651116	114651893	LTR|ERV1|LTR12	-	chr11	114640307	114651608	STRG.58958.17	-	114640307,114648240,114651162	114644382,114648469,114651608	0.928571
transverse_colon_male_adult_54_years	chr3	128626784	128626823	128626822	-	High_confidence	3	4	8	0.644500	2.750000	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128625973	128627266	RPN1|ENST00000490166.1	-	128625973,128626732	128626012,128627266	0.500000
transverse_colon_male_adult_54_years	chr8	38825317	38825361	38825360	+	RAMPAGE_only	9	9	22	1.772375	3.936260	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.909091
transverse_colon_male_adult_54_years	chr2	227534926	227534933	227534926	+	RAMPAGE_only	5	5	12	0.966750	2.918296	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	1.000000
transverse_colon_male_adult_54_years	chr1	23838619	23838662	23838650	-	High_confidence	2	2	8	0.644500	2.750000	chr1	23837780	23838651	LTR|ERV1|LTR1A2	+	chr1	23801886	23838620	HMGCL|ENST00000374487.6	-	23801886,23804399,23808134,23810735,23814189,23816674,23817475,23820509,23826083,23838063	23802564,23804525,23808323,23810799,23814338,23816770,23817583,23820593,23826183,23838620	0.875000
transverse_colon_male_adult_54_years	chr1	247171424	247171425	247171424	-	High_confidence	9	9	11	0.886188	2.921928	chr1	247171309	247171510	LTR|ERV1|MER57E3	+	chr1	247156419	247171967	ZNF124|ENST00000543802.2	-	247156419,247159005,247159686,247171847	247157403,247159066,247159813,247171967	0.818182
transverse_colon_male_adult_54_years	chr19	45524130	45524140	45524139	+	RAMPAGE_only	5	5	12	0.966750	3.084963	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	1.000000
transverse_colon_male_adult_54_years	chr21	29077437	29077487	29077486	+	High_confidence	8	8	44	3.544750	3.727364	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.795455
transverse_colon_male_adult_54_years	chr8	143281669	143281687	143281686	-	High_confidence	30	32	58	4.672625	5.218512	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281250	MINCR|ENST00000519852.5	-	143280827,143281092	143280997,143281250	0.500000
transverse_colon_male_adult_54_years	chr13	46374832	46374833	46374832	-	RAMPAGE_only	27	29	32	2.578000	4.072906	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46342963	46376097	STRG.64705.5	-	46342963,46344740,46345446,46349285,46350112,46356431,46359485,46361440,46362537,46363114,46368041,46371940,46374722	46343497,46344831,46345600,46349347,46350351,46356496,46359631,46361573,46362598,46363213,46368815,46372597,46376097	0.843750
transverse_colon_male_adult_54_years	chr9	123179121	123179131	123179121	-	RAMPAGE_only	4	4	9	0.725063	2.500000	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.888889
transverse_colon_male_adult_54_years	chr12	109069834	109069857	109069834	+	RAMPAGE_only	9	9	20	1.611250	3.511085	chr12	109069527	109070326	LINE|L2|L2a	-	chr12	109067593	109081628	USP30|ENST00000467307.1	+	109067593,109071611,109072304,109073437,109081333	109067627,109071710,109072350,109073532,109081628	0.800000
transverse_colon_male_adult_54_years	chr4	184382288	184382309	184382288	-	High_confidence	4	4	8	0.644500	2.521641	chr4	184382179	184382738	LTR|ERVL|LTR67B	+	chr4	184372406	184382306	LINC02362|ENST00000608785.1	-	184372406,184376440,184378964,184382133	184372480,184376544,184379129,184382306	0.500000
transverse_colon_male_adult_54_years	chr16	21048703	21048704	21048703	-	High_confidence	92	94	98	7.895125	5.899812	chr16	21042672	21048703	LINE|L1|L1PA2	-	chr16	20987995	21048698	STRG.74402.4	-	20987995,21019623,21021970,21024595,21027026,21031044,21033973,21036713,21037760,21039851,21042026,21048605	20988065,21019869,21022100,21024701,21027127,21031286,21034042,21036848,21037980,21039943,21042203,21048698	0.857143
transverse_colon_male_adult_54_years	chr1	222737198	222737199	222737198	+	High_confidence	6	6	9	0.725063	2.725481	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737206	222749524	FAM177B|ENST00000434700.5	+	222737206,222737903,222746530,222747014,222749464	222737238,222738021,222746719,222747081,222749524	0.777778
transverse_colon_male_adult_54_years	chr12	132782351	132782384	132782351	-	RAMPAGE_only	5	5	12	0.966750	2.918296	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132768914	132805161	STRG.63847.11	-	132768914,132774156,132775140,132776633,132776957,132777665,132780797,132782295,132786338,132786692,132789026,132791215,132795851,132796538,132798339,132801766,132804715	132773294,132774320,132775305,132776756,132777090,132777805,132780914,132784307,132786555,132786787,132789290,132791293,132796220,132796700,132798477,132801969,132805161	0.916667
transverse_colon_male_adult_54_years	chr1	206929142	206929358	206929357	-	RAMPAGE_only	866	889	3452	278.101751	6.666917	chr1	206929265	206929570	SINE|Alu|AluY	+	chr1	206928517	206946466	PIGR|ENST00000356495.4	-	206928517,206931496,206931670,206932455,206932985,206934419,206935485,206937094,206939118,206940488,206946335	206930413,206931555,206931802,206932577,206933166,206934746,206935818,206937751,206939463,206940584,206946466	0.994496
transverse_colon_male_adult_54_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	8	8	8	0.644500	3.000000	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.750000
transverse_colon_male_adult_54_years	chr7	107253084	107253085	107253084	-	High_confidence	4	4	6	0.483375	2.584963	chr7	107252247	107253175	LINE|L1|L1MEf	+	chr7	107210454	107253247	COG5|ENST00000464542.5	-	107210454,107211098,107230614,107236449,107248395,107253047	107210605,107211225,107230691,107236687,107248499,107253247	0.666667
transverse_colon_male_adult_54_years	chr5	75611178	75611200	75611181	+	High_confidence	7	7	26	2.094625	4.469670	chr5	75610835	75611347	Retroposon|SVA|SVA_A	-	chr5	75611458	75671846	ANKDD1B|ENST00000601380.2	+	75611458,75616803,75620314,75625646,75625850,75634897,75635783,75653141,75656028,75659282,75663393,75666791,75669251,75670978	75611827,75616907,75620413,75625745,75625955,75634996,75635882,75653240,75656127,75659381,75663489,75666993,75669383,75671846	0.769231
transverse_colon_male_adult_54_years	chr3	51986165	51986194	51986165	+	High_confidence	26	37	107	8.620188	5.356221	chr3	51986054	51986192	SINE|MIR|MIR1_Amn	-	chr3	51986209	51987453	ACY1|ENST00000464587.2	+	51986209,51986414,51986604,51986987,51987146,51987308	51986331,51986504,51986661,51987061,51987196,51987453	0.831776
transverse_colon_male_adult_54_years	chr12	120429608	120429620	120429618	+	RAMPAGE_only	10	21	31	2.497438	3.878451	chr12	120429527	120429802	LINE|L2|L2b	-	chr12	120438089	120440742	COX6A1|NM_004373.3	+	120438089,120438378,120440453	120438229,120438521,120440742	0.903226
transverse_colon_male_adult_54_years	chr2	131104946	131104971	131104970	+	High_confidence	4	4	10	0.805625	2.725481	chr2	131104659	131105113	LINE|L1|L1MC3	-	chr2	131104943	131149852	PLEKHB2|ENST00000234115.10	+	131104943,131120933,131125752,131126683,131130720,131132901,131140169,131146636	131105398,131120978,131125905,131126786,131130760,131132991,131140275,131149852	0.900000
transverse_colon_male_adult_54_years	chr3	9973632	9973633	9973632	-	RAMPAGE_only	5	5	7	0.563938	2.521641	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	1.000000
transverse_colon_male_adult_54_years	chr19	44725180	44725192	44725180	-	High_confidence	17	17	60	4.833750	5.289091	chr19	44725104	44725160	SINE|MIR|MIR1_Amn	-	chr19	44630240	44725224	STRG.83226.1	-	44630240,44699083,44724836	44632619,44699177,44725224	0.816667
transverse_colon_male_adult_54_years	chr11	123061128	123061257	123061256	-	High_confidence	114	117	238	19.173875	5.112420	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.974790
transverse_colon_male_adult_54_years	chrX	2502856	2502879	2502856	-	High_confidence	3	3	11	0.886188	2.721928	chrX	2502799	2503215	LTR|ERV1|MER41D	+	chrX	2266853	2502805	DHRSX|ENST00000441131.7	-	2266853,2291501,2392353,2408744,2425196,2502760	2266947,2291603,2392474,2408813,2425304,2502805	0.727273
transverse_colon_male_adult_54_years	chr6	113873326	113873357	113873326	-	High_confidence	17	17	70	5.639375	4.864578	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.800000
transverse_colon_male_adult_54_years	chr1	52708380	52708388	52708380	-	RAMPAGE_only	8	9	16	1.289000	3.250000	chr1	52708320	52708479	LINE|L2|L2c	+	chr1	52684450	52698366	COA7|ENST00000371538.4	-	52684450,52692726,52698220	52688168,52692867,52698366	1.000000
transverse_colon_male_adult_54_years	chr20	8600707	8600739	8600707	+	High_confidence	5	5	21	1.691813	3.884184	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.809524
transverse_colon_male_adult_54_years	chr6	77369117	77369167	77369166	-	High_confidence	24	29	51	4.108688	4.868758	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77270788	77369158	STRG.35330.1	-	77270788,77273026,77316635,77350621,77368885	77271493,77273307,77316704,77350734,77369158	0.862745
transverse_colon_male_adult_54_years	chr8	144063432	144063458	144063457	-	High_confidence	8	8	24	1.933500	3.827910	chr8	144063426	144063587	LINE|L2|L2a	+	chr8	144053212	144063503	STRG.47628.2	-	144053212,144054560,144054811,144055028,144055787,144056146,144056384,144056617,144056947,144057207,144057447,144058009,144058238,144058495,144058772,144058979,144059598,144059861,144060652,144063303	144053393,144054735,144054913,144055184,144055939,144056259,144056523,144056755,144057118,144057320,144057923,144058148,144058404,144058691,144058896,144059079,144059790,144060085,144062614,144063503	0.625000
transverse_colon_male_adult_54_years	chr12	10553364	10553365	10553364	+	High_confidence	21	21	22	1.772375	3.594466	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.636364
transverse_colon_male_adult_54_years	chr12	4736105	4736127	4736126	-	High_confidence	26	26	52	4.189250	5.051663	chr12	4735148	4736323	LINE|L1|L1M4b	+	chr12	4724304	4736328	STRG.59711.1	-	4724304	4736328	0.942308
transverse_colon_male_adult_54_years	chr5	122477121	122477140	122477139	-	High_confidence	9	11	18	1.450125	3.499228	chr5	122475917	122478731	LTR|ERV1|HERVH-int	-	chr5	122444658	122477090	MGC32805|ENST00000505546.1	-	122444658,122476787	122444913,122477090	0.611111
transverse_colon_male_adult_54_years	chr16	30535319	30535320	30535319	-	High_confidence	14	14	14	1.127875	2.950212	chr16	30535226	30535680	LTR|ERV1|MER4A1	-	chr16	30530366	30535347	ZNF747|ENST00000252799.3	-	30530366,30534196	30533151,30535347	1.000000
transverse_colon_male_adult_54_years	chr8	30812434	30812454	30812453	-	High_confidence	5	5	17	1.369563	3.625000	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.941176
transverse_colon_male_adult_54_years	chr2	110382924	110382941	110382924	-	High_confidence	4	4	10	0.805625	2.721928	chr2	110382151	110383024	LINE|L1|L1MB8	+	chr2	110375155	110382099	STRG.11791.1	-	110375155,110375435,110375515,110375715	110375355,110375475,110375595,110382099	0.700000
transverse_colon_male_adult_54_years	chr16	72627719	72627766	72627719	-	RAMPAGE_only	9	12	61	4.914313	5.151889	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72283300	72664947	LINC01572|ENST00000624829.3	-	72283300,72284571,72285378,72290449,72291169,72349066,72368652,72427389,72522552,72523331,72540577,72555264,72570434,72664891	72283634,72284760,72285453,72290607,72291413,72349206,72368722,72427457,72522623,72523415,72540611,72555326,72570515,72664947	0.672131
transverse_colon_male_adult_54_years	chr17	49120340	49120367	49120354	+	RAMPAGE_only	4	4	10	0.805625	2.721928	chr17	49120136	49120464	LINE|L2|L2c	-	chr17	49132459	49169989	B4GALNT2|NM_001159388.1	+	49132459,49141246,49142034,49152799,49156565,49159036,49160554,49164087,49166113,49168680,49169522	49132510,49141447,49142172,49152906,49156603,49159217,49160641,49164275,49166254,49168900,49169989	1.000000
transverse_colon_male_adult_54_years	chr2	96303188	96303200	96303199	-	RAMPAGE_only	4	4	10	0.805625	2.503258	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.900000
transverse_colon_male_adult_54_years	chr7	141737460	141737480	141737479	+	High_confidence	4	5	12	0.966750	3.084963	chr7	141736645	141737590	DNA|TcMar-Tigger|Tigger3b	+	chr7	141738320	141750461	SSBP1|ENST00000265304.10	+	141738320,141739123,141742168,141743560,141743901,141745495,141750310	141738410,141739190,141742229,141743701,141743989,141745584,141750461	1.000000
transverse_colon_male_adult_54_years	chr9	128113478	128113479	128113478	-	RAMPAGE_only	13	13	18	1.450125	3.175123	chr9	128113305	128113520	LINE|L2|L2a	+	chr9	128105231	128115385	STRG.51413.3	-	128105231,128115073	128114686,128115385	0.944444
transverse_colon_male_adult_54_years	chr19	14491738	14491739	14491738	-	RAMPAGE_only	12	12	12	0.966750	2.918296	chr19	14491587	14491827	LINE|L2|L2	+	chr19	14477761	14496132	GIPC1|ENST00000393033.8	-	14477761,14478683,14479411,14480304,14480592,14482688,14491655,14492856,14496036	14478567,14478765,14479524,14480485,14480778,14483006,14491743,14492912,14496132	0.750000
transverse_colon_male_adult_54_years	chr10	103890285	103890309	103890285	-	High_confidence	26	26	55	4.430938	4.621824	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103890875	STRG.54591.5	-	103882554,103889071,103890224	103882841,103889144,103890875	0.890909
transverse_colon_male_adult_54_years	chr14	51599923	51600018	51599923	-	High_confidence	8	9	50	4.028125	4.598905	chr14	51599913	51599958	SINE|MIR|MIR3	+	chr14	51546628	51599920	FRMD6-AS2|ENST00000557625.1	-	51546628,51547706,51584165,51599826	51546820,51547883,51584283,51599920	0.880000
transverse_colon_male_adult_54_years	chr5	157053009	157053037	157053025	-	High_confidence	127	134	323	26.021688	6.225003	chr5	157052925	157053104	SINE|Alu|AluJr	-	chr5	157025839	157053071	STRG.32355.1	-	157025839,157037246,157042626,157049037,157052360,157052947	157029841,157037361,157042682,157049145,157052654,157053071	0.928793
transverse_colon_male_adult_54_years	chr7	144836400	144836426	144836425	-	High_confidence	7	7	12	0.966750	3.022055	chr7	144836402	144836699	SINE|Alu|AluSx3	+	chr7	144681445	144836395	STRG.43521.5	-	144681445,144682908,144765879,144835559,144836171	144681864,144682978,144765951,144835618,144836395	0.666667
transverse_colon_male_adult_54_years	chr9	113508363	113508447	113508363	+	High_confidence	31	31	140	11.278750	5.459472	chr9	113508286	113508373	LINE|CR1|L3	+	chr9	113508403	113593003	STRG.51137.5	+	113508403,113514457,113517540,113522929,113529220,113536795,113561606,113583449,113591332	113508580,113514654,113517624,113523041,113529264,113536918,113565730,113584427,113593003	0.892857
transverse_colon_male_adult_54_years	chr4	92026135	92026136	92026135	+	High_confidence	100	102	137	11.037063	5.870192	chr4	92025771	92026242	LTR|ERV1|LTR7Y	+	chr4	92026142	92028834	STRG.24989.2	+	92026142,92027874	92026388,92028834	0.905109
transverse_colon_male_adult_54_years	chr6	42227088	42227099	42227089	+	High_confidence	47	59	114	9.184125	5.104883	chr6	42226978	42227346	DNA|TcMar-Tigger|MamRep434	-	chr6	42227072	42234595	STRG.34499.1	+	42227072,42234359	42227146,42234595	0.535088
transverse_colon_male_adult_54_years	chr1	162419798	162419881	162419842	+	High_confidence	21	28	102	8.217375	5.616066	chr1	162419359	162419942	LTR|ERVK|LTR14C	+	chr1	162419839	162446566	STRG.5358.1	+	162419839,162444618,162445548,162446297	162420518,162444691,162445881,162446566	0.784314
transverse_colon_male_adult_54_years	chr9	22113500	22113501	22113500	+	High_confidence	48	48	58	4.672625	5.314709	chr9	22113274	22113535	LTR|ERVL-MaLR|MLT1E1	-	chr9	22113677	22120713	STRG.48490.1	+	22113677,22118643,22120199,22120503	22113799,22118767,22120410,22120713	0.810345
transverse_colon_male_adult_54_years	chr12	6493553	6493590	6493553	-	High_confidence	25	34	113	9.103563	5.613908	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6491885	6493598	MRPL51|ENST00000229238.4	-	6491885,6492861,6493057	6492467,6492972,6493598	0.964602
transverse_colon_male_adult_54_years	chr16	761112	761115	761114	+	High_confidence	9	11	16	1.289000	3.240224	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.937500
transverse_colon_male_adult_54_years	chr16	29760763	29760853	29760809	+	High_confidence	96	98	601	48.418063	6.103981	chr16	29760474	29761018	LTR|ERVL-MaLR|MLT1G1	+	chr16	29760736	29780490	STRG.74794.2	+	29760736,29779259,29779504,29780103	29760949,29779321,29779637,29780490	0.913478
transverse_colon_male_adult_54_years	chr3	75502388	75502409	75502388	+	High_confidence	33	35	60	4.833750	5.287399	chr3	75502089	75503728	LTR|ERV1|HERVS71-int	-	chr3	75502155	75512108	STRG.18987.1	+	75502155	75512108	0.800000
transverse_colon_male_adult_54_years	chr7	76591589	76591627	76591626	-	High_confidence	4	4	8	0.644500	2.500000	chr7	76590244	76592675	LINE|L1|L1PA15	+	chr7	76573725	76591651	STRG.41272.1	-	76573725,76591423	76574177,76591651	0.625000
transverse_colon_male_adult_54_years	chr10	68307085	68307128	68307107	-	High_confidence	31	32	133	10.714813	4.995814	chr10	68307029	68307329	SINE|Alu|AluSx1	-	chr10	68287026	68306879	PBLD|ENST00000277795.8	-	68287026,68292009,68292128,68296885,68306760	68289019,68292039,68292238,68296985,68306879	0.729323
transverse_colon_male_adult_54_years	chr12	109070116	109070130	109070129	+	RAMPAGE_only	6	6	12	0.966750	2.550341	chr12	109069527	109070326	LINE|L2|L2a	-	chr12	109052603	109082917	USP30|ENST00000377883.7	+	109052603,109067523,109071611,109072304,109073437,109081333,109081932,109082662,109082842	109052761,109067627,109071710,109072350,109073532,109081393,109082019,109082743,109082917	0.833333
transverse_colon_male_adult_54_years	chr16	85981671	85981684	85981683	+	High_confidence	8	8	15	1.208438	3.235926	chr16	85981548	85981870	SINE|Alu|AluJo	+	chr16	85981749	85984881	AC092723.1|ENST00000599411.2	+	85981749,85984371	85981871,85984881	0.933333
transverse_colon_male_adult_54_years	chr19	56106475	56106484	56106483	-	High_confidence	6	6	10	0.805625	2.641604	chr19	56106098	56106444	LINE|L1|L1MB8	-	chr19	56087365	56107382	STRG.83824.3	-	56087365,56103138,56106330	56089092,56103227,56107382	0.500000
transverse_colon_male_adult_54_years	chr1	233655694	233655698	233655694	+	RAMPAGE_only	8	10	21	1.691813	3.535175	chr1	233655516	233655871	LTR|ERVL-MaLR|MLT1A0	+	chr1	233649940	233671491	KCNK1|ENST00000446915.1	+	233649940,233666594,233671270	233650049,233666990,233671491	0.523810
transverse_colon_male_adult_54_years	chr4	68750936	68750937	68750936	-	High_confidence	25	26	35	2.819688	4.334238	chr4	68750819	68751238	LTR|ERVK|LTR3B	-	chr4	68744650	68750924	STRG.24202.1	-	68744650,68750701	68745105,68750924	0.771429
transverse_colon_male_adult_54_years	chr9	121720596	121720640	121720614	+	RAMPAGE_only	2	3	12	0.966750	3.459432	chr9	121720356	121720633	SINE|MIR|MIRb	-	chr9	121737150	121785530	DAB2IP|ENST00000648444.1	+	121737150,121757012,121758897,121759884,121763504,121763734,121766493,121768431,121770545,121772606,121774259,121776197,121781463,121782330	121737715,121757166,121758996,121760439,121763649,121763879,121766730,121768633,121770724,121773495,121774412,121776391,121781551,121785530	0.750000
transverse_colon_male_adult_54_years	chr1	43525174	43525187	43525186	+	RAMPAGE_only	12	12	19	1.530688	3.681881	chr1	43524527	43525317	LINE|L2|L2c	-	chr1	43530875	43579285	PTPRF|ENST00000617451.4	+	43530875,43538197,43545030,43553491,43553799,43569589,43578809,43579175	43531090,43538277,43545166,43553637,43553941,43569778,43578920,43579285	0.526316
transverse_colon_male_adult_54_years	chr9	68975752	68975784	68975752	-	RAMPAGE_only	3	3	11	0.886188	3.277613	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68971052	68972610	STRG.49642.1	-	68971052	68972610	0.727273
transverse_colon_male_adult_54_years	chr19	3062922	3062983	3062922	-	High_confidence	12	13	53	4.269813	4.601265	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.943396
transverse_colon_male_adult_54_years	chr7	46969657	46969662	46969657	+	High_confidence	4	4	14	1.127875	3.093069	chr7	46969489	46969705	LINE|L2|L2c	-	chr7	46969701	46983429	AC004870.2|ENST00000445615.5	+	46969701,46972276,46982212,46983010	46969913,46972385,46982303,46983429	0.500000
transverse_colon_male_adult_54_years	chr6	31587009	31587014	31587009	+	High_confidence	3	5	8	0.644500	2.750000	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	1.000000
transverse_colon_male_adult_54_years	chr1	120609356	120609364	120609363	-	High_confidence	5	10	15	1.208438	3.378783	chr1	120609331	120609453	SINE|MIR|MIR3	+	chr1	120528386	120609387	STRG.4526.2	-	120528386,120531877,120536310,120538322,120538570,120541891,120543016,120543946,120544266,120545280,120548288,120548640,120548972,120550144,120573071,120578705,120579070,120609288	120530384,120532089,120536402,120538404,120538735,120542086,120543196,120544084,120544380,120545439,120548501,120548733,120549092,120550276,120573189,120578881,120579194,120609387	0.733333
transverse_colon_male_adult_54_years	chr8	9436175	9436210	9436175	-	High_confidence	4	5	25	2.014063	3.833270	chr8	9436012	9436289	LINE|L2|L2c	-	chr8	9427701	9436204	STRG.44280.1	-	9427701,9435184,9436031	9428465,9435281,9436204	0.920000
transverse_colon_male_adult_54_years	chr4	132262933	132262952	132262933	+	RAMPAGE_only	13	13	23	1.852938	3.551191	chr4	132262711	132263100	LTR|ERVL-MaLR|MSTA	+	chr4	132295205	132295647	STRG.26202.1	+	132295205	132295647	0.608696
transverse_colon_male_adult_54_years	chr16	11587468	11587475	11587474	-	High_confidence	7	7	14	1.127875	2.873141	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.857143
transverse_colon_male_adult_54_years	chr1	17513356	17513417	17513372	+	RAMPAGE_only	19	19	99	7.975688	5.850727	chr1	17513264	17513548	DNA|TcMar-Mariner|MARNA	-	chr1	17519729	17638003	STRG.572.6	+	17519729,17580552,17587459,17588445,17602126,17603507,17607801,17616093,17619338,17621863,17622995,17624386,17625955,17627329,17632320,17634547,17634834,17637887	17520458,17580632,17587645,17588479,17602218,17603591,17607977,17616202,17619445,17621941,17623175,17624503,17626048,17627503,17632466,17634562,17635016,17638003	0.777778
transverse_colon_male_adult_54_years	chr10	102449836	102449845	102449836	+	High_confidence	7	7	15	1.208438	3.093069	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.933333
transverse_colon_male_adult_54_years	chr12	127060497	127060505	127060497	+	High_confidence	98	98	180	14.501250	6.013790	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060474	127150081	STRG.63708.2	+	127060474,127119553,127145711	127061334,127120525,127150081	0.977778
transverse_colon_male_adult_54_years	chr9	89479889	89479890	89479889	-	High_confidence	59	60	61	4.914313	4.083406	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	0.967213
transverse_colon_male_adult_54_years	chr10	29438979	29438982	29438979	-	High_confidence	11	11	30	2.416875	3.695947	chr10	29438848	29439409	LTR|ERV1|LTR10F	-	chr10	29426989	29438972	STRG.52628.3	-	29426989,29438600	29428542,29438972	0.933333
transverse_colon_male_adult_54_years	chr7	6590251	6590299	6590298	+	High_confidence	5	5	21	1.691813	3.499228	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.619048
transverse_colon_male_adult_54_years	chrX	63441913	63441917	63441916	-	RAMPAGE_only	12	13	27	2.175188	4.103910	chrX	63441592	63442156	LINE|L1|L1PA13	+	chrX	63426559	63431612	LINC01278|ENST00000608623.1	-	63426559	63431612	0.629630
transverse_colon_male_adult_54_years	chr16	81995892	81995893	81995892	+	High_confidence	13	13	17	1.369563	3.616875	chr16	81995714	81996778	LINE|L2|L2c	-	chr16	81995908	81997411	STRG.75906.1	+	81995908,81996859	81996048,81997411	0.647059
transverse_colon_male_adult_54_years	chr2	119431400	119431423	119431400	+	High_confidence	4	4	19	1.530688	3.155565	chr2	119431376	119431442	SINE|MIR|MIRc	-	chr2	119431868	119438520	TMEM37|ENST00000306406.4	+	119431868,119436888	119431924,119438520	0.789474
transverse_colon_male_adult_54_years	chr1	151369310	151369360	151369326	-	High_confidence	13	14	66	5.317125	5.258420	chr1	151369225	151369333	DNA|hAT-Tip100|MER91A	-	chr1	151369067	151370285	SELENBP1|ENST00000427867.2	-	151369067,151369441,151369712,151370200	151369189,151369554,151369769,151370285	0.575758
transverse_colon_male_adult_54_years	chr12	105231482	105231535	105231485	-	RAMPAGE_only	9	9	38	3.061375	4.418723	chr12	105231352	105231559	SINE|MIR|MIRb	-	chr12	105177109	105233154	APPL2|ENST00000547809.5	-	105177109,105188272,105189771,105189990,105195260,105195444,105195584,105197764,105199372,105203702,105207060,105207970,105208157,105211229,105217068,105217665,105229124,105233090	105177262,105188447,105189824,105190155,105195349,105195501,105195627,105197953,105199531,105203785,105207207,105208029,105208199,105211317,105217140,105217725,105229223,105233154	0.894737
transverse_colon_male_adult_54_years	chr1	43525091	43525092	43525091	+	High_confidence	244	245	296	23.846500	6.697362	chr1	43524527	43525317	LINE|L2|L2c	-	chr1	43525186	43553519	PTPRF|ENST00000496043.5	+	43525186,43528656,43538197,43545030,43553491	43525257,43528756,43538277,43545166,43553519	0.770270
transverse_colon_male_adult_54_years	chr19	7642274	7642317	7642316	+	High_confidence	3	5	17	1.369563	2.727217	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.705882
transverse_colon_male_adult_54_years	chr4	6927314	6927319	6927318	+	RAMPAGE_only	3	3	8	0.644500	2.807355	chr4	6927305	6927415	SINE|MIR|MIR	+	chr4	6909844	7033111	TBC1D14|ENST00000409757.8	+	6909844,6923372,6967303,6994183,6996324,6999084,7001144,7004843,7006631,7009876,7010652,7014447,7025003,7030326	6909951,6924111,6967424,6994302,6996407,6999202,7001251,7004924,7006726,7009948,7010781,7014557,7025262,7033111	0.875000
transverse_colon_male_adult_54_years	chr20	24930628	24930660	24930639	+	High_confidence	29	29	135	10.875938	5.778437	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930630	24932970	STRG.84916.1	+	24930630,24931346	24930774,24932970	0.955556
transverse_colon_male_adult_54_years	chr6	122652713	122652716	122652713	+	High_confidence	4	4	8	0.644500	2.750000	chr6	122652687	122652852	DNA|TcMar-Tigger|Tigger10	-	chr6	122652728	122726373	PKIB|NM_001270395.1	+	122652728,122675077,122701439,122717786,122725127	122652775,122675144,122701500,122717963,122726373	0.875000
transverse_colon_male_adult_54_years	chr6	43013392	43013393	43013392	-	High_confidence	10	10	10	0.805625	3.321928	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
transverse_colon_male_adult_54_years	chr5	149983618	149983727	149983618	+	RAMPAGE_only	9	10	62	4.994875	4.420756	chr5	149983581	149983876	SINE|Alu|AluJr	-	chr5	149960736	149987400	SLC26A2|NM_000112.3	+	149960736,149977627,149980292	149960979,149978351,149987400	1.000000
transverse_colon_male_adult_54_years	chr4	47187693	47187721	47187693	-	High_confidence	2	3	9	0.725063	2.750000	chr4	47187646	47188171	LINE|L2|L2a	+	chr4	47186738	47187708	STRG.23885.3	-	47186738	47187708	0.777778
transverse_colon_male_adult_54_years	chr16	85047462	85047463	85047462	+	High_confidence	5	5	8	0.644500	2.500000	chr16	85046674	85047999	LINE|L1|L1MD2	-	chr16	85047401	85069149	STRG.75988.6	+	85047401,85066899	85048332,85069149	1.000000
transverse_colon_male_adult_54_years	chr2	156254934	156254963	156254934	-	High_confidence	23	26	112	9.023000	5.516517	chr2	156254518	156260532	LINE|L1|L1PA2	+	chr2	156246068	156255095	STRG.13084.3	-	156246068	156255095	0.544643
transverse_colon_male_adult_54_years	chr9	101385007	101385008	101385007	-	High_confidence	9	9	11	0.886188	2.732159	chr9	101384858	101386000	LTR|ERVK|MER11A	-	chr9	101360416	101385005	BAAT|NM_001701.3	-	101360416,101368119,101370938,101384854	101363015,101368322,101371463,101385005	1.000000
transverse_colon_male_adult_54_years	chr22	46171538	46171549	46171542	+	High_confidence	5	5	14	1.127875	2.896292	chr22	46171297	46171902	LINE|L2|L2a	-	chr22	46171283	46243755	STRG.88676.4	+	46171283,46198344,46215172,46218262,46219811,46231791,46235132	46171492,46198591,46215333,46218401,46220014,46232239,46243755	0.500000
transverse_colon_male_adult_54_years	chr4	4032585	4032586	4032585	+	High_confidence	34	34	49	3.947563	4.602357	chr4	4031112	4033931	LTR|ERV1|HERVS71-int	-	chr4	4032512	4033846	STRG.22605.1	+	4032512	4033846	0.877551
transverse_colon_male_adult_54_years	chr12	110440313	110440336	110440319	-	RAMPAGE_only	6	7	19	1.530688	3.721612	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	1.000000
transverse_colon_male_adult_54_years	chr11	15768351	15768352	15768351	-	High_confidence	1356	1372	1715	138.164688	7.058167	chr11	15768094	15768378	LTR|ERVL-MaLR|MLT1N2	-	chr11	15697408	15768362	STRG.55996.1	-	15697408,15702281,15703750,15704543,15714335,15725679,15768217	15702183,15702342,15703809,15704620,15716278,15725791,15768362	0.549271
transverse_colon_male_adult_54_years	chr11	12249213	12249239	12249213	+	RAMPAGE_only	3	3	11	0.886188	2.845351	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	0.545455
transverse_colon_male_adult_54_years	chr15	89852590	89852631	89852629	-	RAMPAGE_only	19	37	83	6.686688	5.594999	chr15	89852343	89852609	LINE|CR1|L3	-	chr15	89835423	89837954	AP3S2|ENST00000558926.1	-	89835423,89837614	89835643,89837954	0.542169
transverse_colon_male_adult_54_years	chr8	27977120	27977126	27977125	-	High_confidence	15	16	25	2.014063	3.844882	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27869881	27977116	STRG.44707.2	-	27869881,27879568,27904777,27907147,27909662,27921570,27966413,27977029	27872070,27879766,27904834,27907246,27909743,27922245,27966542,27977116	0.880000
transverse_colon_male_adult_54_years	chr12	126030632	126030633	126030632	+	RAMPAGE_only	19	20	20	1.611250	3.536887	chr12	126030296	126030746	LTR|ERVK|LTR22A	+	chr12	126032473	126033271	STRG.63672.1	+	126032473,126033073	126032552,126033271	0.550000
transverse_colon_male_adult_54_years	chrX	11351675	11351676	11351675	-	RAMPAGE_only	5	5	8	0.644500	3.000000	chrX	11351610	11351708	DNA|TcMar-Tigger|Tigger16b	-	chrX	11143396	11290478	ARHGAP6|ENST00000380717.7	-	11143396,11156528,11169504,11178099,11179301,11182062,11186235,11188727,11196924,11254547,11290382	11144248,11156626,11169684,11178248,11179452,11182118,11186431,11188984,11196996,11254707,11290478	0.500000
transverse_colon_male_adult_54_years	chr16	20676155	20676192	20676161	-	High_confidence	10	11	23	1.852938	4.088779	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.739130
transverse_colon_male_adult_54_years	chr3	11225963	11226026	11226025	+	High_confidence	18	18	92	7.411750	5.675311	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.597826
transverse_colon_male_adult_54_years	chr13	50185864	50185953	50185884	+	High_confidence	13	13	90	7.250625	5.727091	chr13	50180295	50186330	LINE|L1|L1PA2	-	chr13	50185879	50528064	DLEU1|ENST00000485007.5	+	50185879,50390197,50415088,50433412,50527865	50186070,50390291,50415202,50433550,50528064	0.611111
transverse_colon_male_adult_54_years	chr15	23714069	23714070	23714069	+	RAMPAGE_only	41	41	51	4.108688	5.039785	chr15	23714069	23720096	LINE|L1|L1PA3	+	chr15	23734145	23736590	STRG.69235.1	+	23734145	23736590	0.607843
transverse_colon_male_adult_54_years	chr7	107874241	107874257	107874252	-	RAMPAGE_only	42	44	98	7.895125	4.375638	chr7	107873942	107874331	LTR|ERVL-MaLR|MLT1K	-	chr7	107871756	107872602	STRG.42541.1	-	107871756	107872602	0.979592
transverse_colon_male_adult_54_years	chr19	49086520	49086547	49086520	+	High_confidence	32	34	59	4.753188	4.991349	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.915254
transverse_colon_male_adult_54_years	chr5	117455064	117455102	117455101	+	High_confidence	27	27	85	6.847813	5.296338	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.870588
transverse_colon_male_adult_54_years	chr15	43133134	43133146	43133134	+	High_confidence	5	5	12	0.966750	3.022055	chr15	43132939	43133196	SINE|Alu|AluJo	+	chr15	43133143	43148788	TMEM62|ENST00000569535.5	+	43133143,43135511,43146492,43148754	43133402,43135649,43146634,43148788	0.583333
transverse_colon_male_adult_54_years	chr4	81154211	81154222	81154221	-	High_confidence	10	10	29	2.336313	4.017825	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.965517
transverse_colon_male_adult_54_years	chr15	101295822	101295835	101295827	+	High_confidence	10	10	30	2.416875	3.589898	chr15	101295782	101295880	LINE|L1|L1ME3	-	chr15	101296824	101298739	STRG.72917.1	+	101296824	101298739	0.900000
transverse_colon_male_adult_54_years	chr5	126674965	126675005	126674965	-	High_confidence	16	19	50	4.028125	4.988758	chr5	126674799	126674960	LTR|ERV1|HERVH-int	-	chr5	126661164	126674998	STRG.31105.13	-	126661164,126673498,126674817	126664619,126673599,126674998	0.520000
transverse_colon_male_adult_54_years	chr20	3795735	3795751	3795750	+	High_confidence	5	5	10	0.805625	2.921928	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
transverse_colon_male_adult_54_years	chrX	48683362	48683363	48683362	+	High_confidence	9	12	12	0.966750	3.084963	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
transverse_colon_male_adult_54_years	chr14	73567616	73567641	73567640	+	High_confidence	7	8	19	1.530688	3.681881	chr14	73567334	73568063	LTR|ERV1|LTR12_	+	chr14	73567619	73575658	ACOT2|NR_046028.1	+	73567619,73569277,73573387,73574907	73568129,73569396,73573590,73575658	0.947368
transverse_colon_male_adult_54_years	chr11	67886471	67886473	67886471	+	High_confidence	5	10	10	0.805625	2.521928	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.900000
transverse_colon_male_adult_54_years	chr2	113704173	113704174	113704173	-	High_confidence	58	58	59	4.753188	5.067045	chr2	113703868	113704969	LTR|ERV1|LTR12E	-	chr2	113677701	113704078	AC017074.1|ENST00000424612.1	-	113677701,113688160,113703696	113677783,113688257,113704078	0.847458
transverse_colon_male_adult_54_years	chr1	64757440	64757450	64757449	+	RAMPAGE_only	4	6	16	1.289000	3.405639	chr1	64757260	64757640	LTR|ERVL-MaLR|MLT1B	+	chr1	64745094	64833229	RAVER2|ENST00000294428.7	+	64745094,64768655,64777622,64781379,64789387,64802975,64804733,64804990,64807205,64812737,64814703,64830838	64745421,64768722,64778092,64781571,64789514,64803061,64804838,64805105,64807474,64812849,64814840,64833229	0.750000
transverse_colon_male_adult_54_years	chr15	64326659	64326662	64326659	+	High_confidence	4	6	10	0.805625	2.725481	chr15	64326660	64332685	LINE|L1|L1PA2	+	chr15	64326660	64328407	STRG.71446.1	+	64326660	64328407	0.800000
transverse_colon_male_adult_54_years	chr17	31762436	31762437	31762436	+	High_confidence	7	7	7	0.563938	2.807355	chr17	31762038	31762862	LTR|ERV1|LTR12	+	chr17	31762439	31769048	AC007923.1|ENST00000577970.1	+	31762439,31769006	31762902,31769048	0.857143
transverse_colon_male_adult_54_years	chr9	39809856	39809874	39809858	-	High_confidence	4	8	19	1.530688	3.947703	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39807380	39810058	GLIDR|ENST00000618092.2	-	39807380,39809730	39809633,39810058	0.526316
transverse_colon_male_adult_54_years	chr5	154038408	154038409	154038408	-	High_confidence	9	9	11	0.886188	2.646439	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.545455
transverse_colon_male_adult_54_years	chr19	49867879	49867885	49867884	-	High_confidence	4	4	8	0.644500	2.521641	chr19	49867867	49867996	SINE|MIR|MIR	+	chr19	49861203	49867886	PNKP|ENST00000322344.7	-	49861203,49861448,49861607,49861771,49862043,49862184,49862370,49862537,49862689,49863688,49863963,49864178,49864323,49865126,49866398,49867053,49867468	49861365,49861510,49861695,49861881,49862105,49862281,49862463,49862608,49862738,49863760,49864071,49864236,49864403,49865426,49866445,49867217,49867886	0.750000
transverse_colon_male_adult_54_years	chr5	39448700	39448723	39448700	-	High_confidence	41	54	108	8.700750	5.035626	chr5	39448488	39449045	LTR|ERVL|MLT2B3	-	chr5	39389107	39448718	STRG.28545.8	-	39389107,39389851,39390443,39392364,39393253,39394229,39448575	39389123,39389932,39390575,39392463,39393393,39394421,39448718	0.916667
transverse_colon_male_adult_54_years	chr13	60442023	60442037	60442023	+	RAMPAGE_only	8	9	15	1.208438	3.521641	chr13	60441716	60442080	LTR|ERVL|MER68B	-	chr13	60434048	60485899	TDRD3|ENST00000377882.7	+	60434048,60439687,60444686,60460379,60467237,60483774,60485798	60434085,60439772,60444748,60460540,60467379,60483846,60485899	0.666667
transverse_colon_male_adult_54_years	chr2	240617389	240617390	240617389	+	RAMPAGE_only	10	10	11	0.886188	2.921928	chr2	240617180	240617426	LTR|ERVL-MaLR|MLT1F2	+	chr2	240618942	240631258	GPR35|ENST00000430267.2	+	240618942,240629948	240619031,240631258	0.727273
transverse_colon_male_adult_54_years	chr3	193824696	193824700	193824696	+	High_confidence	2	3	8	0.644500	2.521641	chr3	193824075	193824978	LINE|L1|L1ME2	-	chr3	193824716	193827531	STRG.22189.1	+	193824716,193826182	193824771,193827531	0.625000
transverse_colon_male_adult_54_years	chr21	22062635	22062676	22062647	-	High_confidence	245	268	869	70.008813	7.091570	chr21	22062350	22062974	LINE|L2|L2a	+	chr21	22019069	22062759	STRG.86473.3	-	22019069,22042192,22062008	22041435,22043087,22062759	0.962025
transverse_colon_male_adult_54_years	chr11	77175291	77175303	77175302	+	High_confidence	9	9	17	1.369563	3.875000	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.941176
transverse_colon_male_adult_54_years	chr17	39187459	39187489	39187488	-	RAMPAGE_only	5	5	13	1.047313	2.918296	chr17	39187272	39187460	SINE|MIR|MIRb	-	chr17	39173800	39193883	CACNB1|ENST00000539338.6	-	39173800,39177349,39177983,39183712,39184030,39184324,39184783,39185130,39186495,39186792,39187478,39191473	39175657,39177535,39178079,39183864,39184140,39184383,39184864,39185150,39186572,39186929,39187601,39193883	0.769231
transverse_colon_male_adult_54_years	chr9	39810033	39810099	39810033	-	High_confidence	13	13	34	2.739125	4.256515	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.676471
transverse_colon_male_adult_54_years	chr20	50267477	50267502	50267499	+	High_confidence	3	3	10	0.805625	3.121928	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267498	50278427	SMIM25|ENST00000445003.5	+	50267498,50277490,50278176	50267663,50277613,50278427	0.700000
transverse_colon_male_adult_54_years	chr22	41583996	41584028	41583996	-	RAMPAGE_only	6	6	13	1.047313	2.855389	chr22	41583835	41583953	SINE|MIR|MIRc	-	chr22	41576902	41585402	PMM1|ENST00000482178.5	-	41576902,41577807,41578805,41583958,41584526	41577440,41577923,41578881,41584372,41585402	0.846154
transverse_colon_male_adult_54_years	chrX	7147267	7147288	7147267	+	High_confidence	8	8	19	1.530688	3.683542	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.894737
transverse_colon_male_adult_54_years	chr17	47067487	47067518	47067498	-	High_confidence	118	125	514	41.409125	5.584581	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.951362
transverse_colon_male_adult_54_years	chr2	96638016	96638039	96638022	-	High_confidence	6	9	30	2.416875	3.770942	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96610725	96638020	STRG.11306.6	-	96610725,96611063,96612281,96612461,96612817,96613487,96619358,96636920	96610883,96611138,96612353,96612563,96612934,96613619,96631543,96638020	0.866667
transverse_colon_male_adult_54_years	chr8	61578141	61578142	61578141	+	High_confidence	1857	1868	1889	152.182563	6.208456	chr8	61577893	61578148	LTR|ERVL-MaLR|THE1D-int	-	chr8	61578153	61579668	STRG.45306.1	+	61578153,61578986	61578938,61579668	0.983589
transverse_colon_male_adult_54_years	chr16	29736923	29736924	29736923	-	High_confidence	109	118	143	11.520438	5.805273	chr16	29736740	29737042	LTR|ERVL-MaLR|THE1C	-	chr16	29731050	29736911	STRG.74787.1	-	29731050,29736632,29736823	29736296,29736707,29736911	0.944056
transverse_colon_male_adult_54_years	chr8	136530791	136530808	136530791	+	High_confidence	12	13	26	2.094625	3.430457	chr8	136530234	136530974	LTR|ERV1|LTR12C	-	chr8	136530797	136897601	LINC02055|ENST00000524346.5	+	136530797,136536977,136789834,136797273,136896984,136897432	136531006,136537059,136789889,136797370,136897078,136897601	0.769231
transverse_colon_male_adult_54_years	chr7	140260440	140260444	140260443	-	High_confidence	10	10	18	1.450125	3.381580	chr7	140260344	140260594	LINE|CR1|CR1_Mam	-	chr7	140084854	140260679	STRG.43389.3	-	140084854,140091803,140094055,140096554,140096898,140097544,140098878,140099898,140101950,140111094,140113490,140119112,140120441,140126636,140127441,140129492,140133538,140139104,140260371	140091188,140092077,140094138,140096763,140097047,140097642,140099033,140100023,140102160,140111184,140113582,140119219,140124783,140126823,140127583,140129653,140133656,140139190,140260679	0.611111
transverse_colon_male_adult_54_years	chr5	149905164	149905189	149905188	-	RAMPAGE_only	13	16	30	2.416875	3.758867	chr5	149904974	149905604	LINE|L2|L2c	+	chr5	149857952	149903814	STRG.32162.1	-	149857952,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647	149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149903814	0.966667
transverse_colon_male_adult_54_years	chr8	38922156	38922174	38922156	+	RAMPAGE_only	5	5	10	0.805625	2.721928	chr8	38921944	38922157	SINE|MIR|MIR	-	chr8	38901802	38971956	PLEKHA2|ENST00000616834.1	+	38901802,38917906,38935993,38950849,38952165,38952635,38953296,38957322,38968591,38969420	38902069,38918070,38936050,38950990,38952312,38952704,38953367,38957386,38968669,38971956	0.500000
transverse_colon_male_adult_54_years	chr21	36005313	36005320	36005319	+	High_confidence	8	8	15	1.208438	3.323231	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.933333
transverse_colon_male_adult_54_years	chr9	109251793	109251794	109251793	-	RAMPAGE_only	12	12	14	1.127875	2.931209	chr9	109251693	109251821	LINE|L2|L2c	-	chr9	109171973	109320964	EPB41L4B|NM_019114.4	-	109171973,109176550,109182728,109185488,109192277,109194219,109200235,109203662,109207923,109213699,109216921,109243617,109247755,109251480,109253440,109255510,109255773,109256135,109256392,109258176,109263049,109264979,109267472,109268390,109279816,109320140	109174623,109176696,109182797,109185605,109192355,109194397,109200334,109203730,109208049,109213818,109217145,109243682,109247789,109251511,109253550,109255680,109255843,109256224,109256480,109258297,109263102,109265024,109267551,109268433,109279921,109320964	0.500000
transverse_colon_male_adult_54_years	chr22	45150342	45150373	45150344	+	High_confidence	15	26	37	2.980813	4.648956	chr22	45150161	45150578	LTR|ERVL-MaLR|MLT1B	+	chr22	45150356	45150911	STRG.88622.1	+	45150356	45150911	0.918919
transverse_colon_male_adult_54_years	chr15	89852502	89852520	89852502	-	RAMPAGE_only	5	6	14	1.127875	2.896292	chr15	89852343	89852609	LINE|CR1|L3	-	chr15	89835423	89837954	AP3S2|ENST00000558926.1	-	89835423,89837614	89835643,89837954	0.642857
transverse_colon_male_adult_54_years	chr15	53116364	53116368	53116367	+	High_confidence	77	149	211	16.998688	6.418809	chr15	53116204	53116486	LTR|ERVL-MaLR|MSTD	+	chr15	53116364	53129698	LINC02490|ENST00000559915.1	+	53116364,53118218,53129238	53116458,53118265,53129698	0.535545
transverse_colon_male_adult_54_years	chr5	147839192	147839238	147839194	-	High_confidence	16	29	60	4.833750	4.700028	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824571	147839230	STRG.32075.1	-	147824571,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839230	0.783333
transverse_colon_male_adult_54_years	chr6	85390189	85390222	85390189	-	High_confidence	2	3	12	0.966750	3.084963	chr6	85390133	85390460	LINE|L2|L2c	+	chr6	85387218	85390186	LINC02535|ENST00000455071.1	-	85387218,85390012	85389557,85390186	0.833333
transverse_colon_male_adult_54_years	chr2	91766682	91766704	91766703	+	High_confidence	7	7	17	1.369563	3.337175	chr2	91766515	91766814	LINE|L2|L2	-	chr2	91766691	91790241	STRG.11148.1	+	91766691,91772820,91774828,91775113,91776028,91780409	91767439,91772890,91774897,91775393,91776107,91790241	1.000000
transverse_colon_male_adult_54_years	chr5	133089677	133089678	133089677	+	RAMPAGE_only	13	13	17	1.369563	3.616875	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
transverse_colon_male_adult_54_years	chr3	146222301	146222319	146222303	-	High_confidence	18	25	45	3.625313	4.383535	chr3	146222213	146223104	LINE|L2|L2a	-	chr3	146206586	146222371	PLSCR4|ENST00000498625.1	-	146206586,146220814,146222064	146206761,146220925,146222371	0.866667
transverse_colon_male_adult_54_years	chr3	188153195	188153210	188153195	+	High_confidence	6	6	12	0.966750	2.663533	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.916667
transverse_colon_male_adult_54_years	chr4	110411345	110411356	110411345	+	RAMPAGE_only	4	4	15	1.208438	3.182006	chr4	110409693	110411445	LINE|L1|L1PA2	-	chr4	110365732	110506258	ENPEP|ENST00000510961.1	+	110365732,110488540,110491032,110500028,110506182	110365804,110488682,110491164,110500163,110506258	0.733333
transverse_colon_male_adult_54_years	chr16	15798664	15798670	15798664	-	RAMPAGE_only	24	26	50	4.028125	4.890021	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.880000
transverse_colon_male_adult_54_years	chr6	28354122	28354138	28354137	-	High_confidence	4	4	9	0.725063	2.725481	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.555556
transverse_colon_male_adult_54_years	chr15	98017769	98017774	98017769	-	RAMPAGE_only	11	11	20	1.611250	3.784184	chr15	98016264	98017842	LINE|L2|L2a	+	chr15	97990037	97996229	STRG.72710.1	-	97990037,97995325	97990590,97996229	0.500000
transverse_colon_male_adult_54_years	chr7	7566514	7566534	7566514	-	High_confidence	23	25	76	6.122750	5.304493	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.842105
transverse_colon_male_adult_54_years	chr4	37727785	37727833	37727818	-	RAMPAGE_only	3	3	13	1.047313	3.026987	chr4	37727747	37727981	SINE|MIR|MIR	+	chr4	37709302	37709726	STRG.23606.1	-	37709302	37709726	0.769231
transverse_colon_male_adult_54_years	chr9	20658338	20658349	20658338	+	High_confidence	14	16	77	6.203313	4.448435	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.740260
transverse_colon_male_adult_54_years	chr7	150393447	150393448	150393447	+	High_confidence	24	25	29	2.336313	3.753434	chr7	150392833	150393658	LINE|L1|L1MC2	-	chr7	150393413	150398631	STRG.43787.18	+	150393413,150396512	150393507,150398631	0.931034
transverse_colon_male_adult_54_years	chr5	107631048	107631051	107631050	-	High_confidence	3	5	7	0.563938	2.521641	chr5	107630228	107631152	DNA|TcMar-Tigger|Tigger3b	-	chr5	107592111	107631623	STRG.30441.1	-	107592111	107631623	0.857143
transverse_colon_male_adult_54_years	chr2	240022243	240022269	240022243	-	RAMPAGE_only	5	5	13	1.047313	3.085055	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
transverse_colon_male_adult_54_years	chr1	195722378	195722382	195722381	-	High_confidence	716	716	1078	86.846375	5.897394	chr1	195721970	195723453	LTR|ERV1|LTR12C	-	chr1	195572053	195722390	STRG.6522.4	-	195572053,195690604,195721819	195574805,195690765,195722390	0.960111
transverse_colon_male_adult_54_years	chr20	44355234	44355256	44355241	-	High_confidence	21	25	78	6.283875	4.899197	chr20	44355193	44355255	SINE|MIR|MIR	+	chr20	44347551	44355185	AL117382.1|ENST00000438702.1	-	44347551,44350619,44351867,44355018	44347818,44350856,44351950,44355185	0.948718
transverse_colon_male_adult_54_years	chr9	74822487	74822492	74822487	-	RAMPAGE_only	300	325	578	46.565125	6.455942	chr9	74822251	74822549	SINE|Alu|AluJb	-	chr9	74723924	74824478	STRG.49803.5	-	74723924,74728238,74732684,74738406,74739366,74739722,74742560,74744094,74747888,74750663,74752276,74755352,74761695,74761998,74771702,74775882,74782361,74782678,74785873,74788613,74792623,74796740,74800253,74801897,74803793,74808033,74810814,74812298,74816668,74816891,74820303,74821668,74822341	74724746,74728345,74732736,74738612,74739449,74740009,74742626,74744145,74747914,74750722,74752368,74755473,74761808,74763134,74771835,74776076,74782476,74782853,74786125,74788742,74792770,74796893,74800482,74802175,74803886,74808174,74810868,74812433,74816769,74816964,74820427,74821837,74824478	0.889273
transverse_colon_male_adult_54_years	chr2	182030773	182030782	182030781	+	High_confidence	3	3	7	0.563938	2.807355	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.857143
transverse_colon_male_adult_54_years	chr17	42980374	42980396	42980395	-	High_confidence	6	6	15	1.208438	3.456565	chr17	42980326	42980440	LINE|L2|L2a	+	chr17	42968103	42980433	PTGES3L|ENST00000409446.7	-	42968103,42970288,42971606,42979169,42979377,42980045	42969186,42970342,42971696,42979268,42979444,42980433	0.666667
transverse_colon_male_adult_54_years	chr14	81427428	81427462	81427461	-	High_confidence	3	3	7	0.563938	2.807355	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	1.000000
transverse_colon_male_adult_54_years	chr15	67063927	67063965	67063964	+	High_confidence	7	8	32	2.578000	3.802910	chr15	67063857	67064075	SINE|MIR|MIRb	+	chr15	67063968	67064766	STRG.71586.1	+	67063968	67064766	0.875000
transverse_colon_male_adult_54_years	chr17	50271485	50271486	50271485	+	High_confidence	5	5	7	0.563938	2.521641	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
transverse_colon_male_adult_54_years	chr2	174410329	174410372	174410340	+	High_confidence	7	7	30	2.416875	3.866433	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.866667
transverse_colon_male_adult_54_years	chr9	123179165	123179188	123179187	-	RAMPAGE_only	5	6	10	0.805625	2.521928	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	1.000000
transverse_colon_male_adult_54_years	chr11	624215	624271	624270	-	High_confidence	15	15	31	2.497438	4.300498	chr11	624236	624405	SINE|MIR|MIR1_Amn	-	chr11	617255	624932	CDHR5|ENST00000531177.5	-	617255,617953,618598,619305,619473,619680,620066,620295,621079,621344,621561,621811,624212,624556,624817	617770,618111,619180,619390,619587,619881,620164,620386,621250,621455,621663,621904,624416,624732,624932	0.903226
transverse_colon_male_adult_54_years	chr14	81170385	81170414	81170402	-	High_confidence	4	4	29	2.336313	4.180451	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.793103
transverse_colon_male_adult_54_years	chr14	34536109	34536110	34536109	-	High_confidence	10	10	14	1.127875	2.623517	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.857143
transverse_colon_male_adult_54_years	chr2	240022172	240022173	240022172	-	RAMPAGE_only	10	10	13	1.047313	2.815072	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
transverse_colon_male_adult_54_years	chr1	195721881	195721934	195721933	+	High_confidence	13	13	39	3.141938	4.143625	chr1	195721489	195721970	LTR|ERVK|LTR14C	-	chr1	195721742	195758046	STRG.6523.1	+	195721742,195738115,195749004,195757775	195722034,195738437,195749147,195758046	0.743590
transverse_colon_male_adult_54_years	chr11	123060124	123060229	123060168	-	High_confidence	27	28	151	12.164938	4.844784	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	1.000000
transverse_colon_male_adult_54_years	chr2	174410483	174410484	174410483	-	RAMPAGE_only	7	7	7	0.563938	2.521641	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174348021	174395715	CIR1|ENST00000342016.7	-	174348021,174350659,174351618,174378922,174380201,174380650,174380803,174381703,174387684,174395550	174349172,174350745,174351725,174379040,174380250,174380715,174380814,174381777,174387779,174395715	0.714286
transverse_colon_male_adult_54_years	chr5	80253505	80253517	80253505	-	RAMPAGE_only	8	10	17	1.369563	3.577820	chr5	80253406	80253731	LINE|L2|L2c	+	chr5	80177314	80255198	SERINC5|ENST00000513907.1	-	80177314,80177885,80202885,80255081	80177397,80178064,80203053,80255198	0.705882
transverse_colon_male_adult_54_years	chr9	122164574	122164596	122164595	+	RAMPAGE_only	30	38	63	5.075438	5.094775	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122166767	122200083	MORN5|ENST00000486801.1	+	122166767,122174495,122199884	122166915,122174627,122200083	0.936508
transverse_colon_male_adult_54_years	chr11	100715407	100715410	100715407	+	RAMPAGE_only	13	13	20	1.611250	3.784184	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.500000
transverse_colon_male_adult_54_years	chr9	121313981	121314021	121314002	+	RAMPAGE_only	54	54	171	13.776188	5.271203	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.982456
transverse_colon_male_adult_54_years	chr15	39609309	39609352	39609309	-	High_confidence	73	84	184	14.823500	6.588705	chr15	39608720	39609354	LINE|L1|L1MA7	+	chr15	39583712	39609341	STRG.70173.3	-	39583712,39594054	39593683,39609341	0.983696
transverse_colon_male_adult_54_years	chr8	119151996	119152037	119151996	+	High_confidence	13	14	46	3.705875	4.788755	chr8	119151807	119152162	LTR|ERVL-MaLR|THE1B	+	chr8	119151950	119243522	STRG.46961.1	+	119151950,119169682,119221586,119240164,119243416	119152079,119169784,119221757,119240320,119243522	0.500000
transverse_colon_male_adult_54_years	chr7	99660161	99660162	99660161	-	High_confidence	12	12	14	1.127875	2.807355	chr7	99654085	99660201	LINE|L1|L1PA4	-	chr7	99648199	99660602	STRG.42168.18	-	99648199,99650072,99652552	99648400,99650232,99660602	1.000000
transverse_colon_male_adult_54_years	chr12	4720410	4720433	4720429	+	High_confidence	64	67	259	20.865688	5.830249	chr12	4720007	4720593	LTR|ERVK|LTR14C	-	chr12	4720340	4772726	GALNT8|ENST00000252318.6	+	4720340,4726531,4739162,4744516,4745428,4746143,4760957,4763252,4763951,4765378,4772444	4720888,4726829,4739329,4744700,4745626,4746258,4761143,4763390,4764047,4765546,4772726	0.984556
transverse_colon_male_adult_54_years	chr20	45833310	45833338	45833310	-	High_confidence	3	4	11	0.886188	2.663533	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
transverse_colon_male_adult_54_years	chr2	159428326	159428357	159428356	-	RAMPAGE_only	9	10	18	1.450125	4.058814	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.555556
transverse_colon_male_adult_54_years	chr8	12522253	12522274	12522253	+	RAMPAGE_only	17	17	49	3.947563	4.451046	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12560717	12583036	STRG.44379.8	+	12560717	12583036	0.857143
transverse_colon_male_adult_54_years	chr12	31756998	31757009	31756998	-	High_confidence	65	77	102	8.217375	5.534370	chr12	31756862	31757481	LTR|ERV1|LTR8B	-	chr12	31750344	31757087	STRG.60901.3	-	31750344,31753147	31752737,31757087	0.862745
transverse_colon_male_adult_54_years	chr17	8062615	8062630	8062629	+	High_confidence	40	42	80	6.445000	5.265841	chr17	8062291	8063901	LTR|ERVK|HERVK-int	+	chr17	8062629	8063173	STRG.76641.1	+	8062629	8063173	0.875000
transverse_colon_male_adult_54_years	chrX	103718223	103718277	103718276	-	High_confidence	4	4	24	1.933500	4.084963	chrX	103718252	103718364	LINE|L2|L2a	+	chrX	103704718	103718272	STRG.91263.1	-	103704718,103713519,103718144	103707514,103713669,103718272	0.833333
transverse_colon_male_adult_54_years	chr20	21160833	21160834	21160833	+	RAMPAGE_only	4	7	7	0.563938	2.807355	chr20	21160661	21161021	LTR|ERVL-MaLR|MLT1A0	+	chr20	21145588	21246622	KIZ|ENST00000619179.4	+	21145588,21161870,21162849,21205490,21214534,21229010,21232733,21244244,21246478	21145654,21162507,21163159,21205584,21214700,21229115,21232830,21244288,21246622	1.000000
transverse_colon_male_adult_54_years	chr6	29924920	29924921	29924920	+	RAMPAGE_only	25	25	25	2.014063	3.623465	chr6	29924869	29924950	LINE|L2|L2	-	chr6	29926325	29927057	STRG.33980.31	+	29926325,29926659	29926530,29927057	0.840000
transverse_colon_male_adult_54_years	chr12	2798762	2798794	2798793	+	High_confidence	6	6	12	0.966750	2.663533	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.833333
transverse_colon_male_adult_54_years	chr19	38289175	38289188	38289175	+	High_confidence	3	3	10	0.805625	2.921928	chr19	38289206	38289513	SINE|Alu|AluSc8	+	chr19	38288405	38292468	SPINT2|ENST00000585357.1	+	38288405,38290536	38290280,38292468	1.000000
transverse_colon_male_adult_54_years	chr2	230713864	230713884	230713864	+	High_confidence	4	4	9	0.725063	2.750000	chr2	230713791	230714179	LINE|L2|L2c	-	chr2	230713547	230821075	CAB39|NM_001130850.1	+	230713547,230759958,230790871,230793212,230798728,230810262,230814048,230817753,230818515	230713802,230760115,230791036,230793331,230798897,230810322,230814114,230817897,230821075	0.666667
transverse_colon_male_adult_54_years	chr15	41278798	41278887	41278886	+	RAMPAGE_only	7	7	63	5.075438	4.244307	chr15	41278930	41279226	SINE|Alu|AluSg	+	chr15	41231238	41281887	CHP1|NM_007236.4	+	41231238,41243666,41256909,41262755,41270556,41278766,41279335	41231449,41243739,41256990,41262883,41270618,41278889,41281887	1.000000
transverse_colon_male_adult_54_years	chr8	34174878	34174894	34174878	+	High_confidence	7	10	28	2.255750	4.110577	chr8	34174849	34181329	LINE|L1|L1PB1	+	chr8	34174885	34184895	AC087855.2|ENST00000518217.1	+	34174885,34184486	34175013,34184895	0.607143
transverse_colon_male_adult_54_years	chr16	4355592	4355593	4355592	-	High_confidence	50	50	50	4.028125	4.511272	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.920000
transverse_colon_male_adult_54_years	chr7	150323681	150323751	150323750	-	High_confidence	51	57	295	23.765938	5.656054	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150272795	150323725	STRG.43765.3	-	150272795,150286366,150289449,150293311,150295251,150323468	150284845,150286540,150289593,150293419,150295347,150323725	0.976271
transverse_colon_male_adult_54_years	chr5	14209344	14209349	14209348	+	RAMPAGE_only	6	6	13	1.047313	2.584963	chr5	14209316	14209521	LINE|L1|L1MC5	-	chr5	14183797	14399400	TRIO|ENST00000509967.6	+	14183797,14270824,14280321,14286870,14290715,14293011,14297071,14304460,14316512,14330777,14336535,14358177,14359356,14363731,14364649,14366859,14368707,14369373,14374228,14378011,14381129,14387437,14387731,14388612,14389288,14390230,14390900,14394037,14397042,14398879	14183959,14270899,14280436,14287063,14291228,14293134,14297263,14304592,14316743,14330900,14336727,14358347,14359531,14363927,14364816,14366979,14368899,14369523,14374343,14378127,14381252,14387632,14387847,14388679,14389398,14390300,14390990,14394130,14397154,14399400	0.846154
transverse_colon_male_adult_54_years	chr11	58578102	58578133	58578102	-	High_confidence	52	58	154	12.406625	5.686909	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58527038	58578166	STRG.56897.3	-	58527038,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58576733	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.922078
transverse_colon_male_adult_54_years	chr19	12800915	12800962	12800921	-	High_confidence	2	2	12	0.966750	2.913977	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.833333
transverse_colon_male_adult_54_years	chr1	227142956	227142957	227142956	-	RAMPAGE_only	12	12	12	0.966750	2.751629	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.833333
transverse_colon_male_adult_54_years	chr19	55333948	55333970	55333948	-	High_confidence	2	2	11	0.886188	2.913977	chr19	55333705	55334001	LINE|L1|L1MB5	-	chr19	55319463	55334048	TMEM150B|ENST00000592891.1	-	55319463,55320390,55320557,55320968,55322647,55333903	55320166,55320458,55320617,55321093,55322743,55334048	1.000000
transverse_colon_male_adult_54_years	chr1	116984535	116984585	116984535	+	RAMPAGE_only	39	40	80	6.445000	4.850375	chr1	116984390	116984612	SINE|MIR|MIR	+	chr1	116910056	116990358	PTGFRN|ENST00000393203.2	+	116910056,116941714,116944678,116949191,116961242,116966910,116974215,116984679,116986800	116910252,116942083,116945092,116949572,116961668,116967330,116974323,116984985,116990358	0.962500
transverse_colon_male_adult_54_years	chrX	155612325	155612360	155612359	+	High_confidence	3	3	9	0.725063	3.169925	chrX	155612307	155612443	SINE|MIR|MIR3	-	chrX	155612463	155782459	STRG.92237.1	+	155612463,155767961,155773765	155612647,155768136,155782459	0.777778
transverse_colon_male_adult_54_years	chr14	24423136	24423190	24423184	+	High_confidence	41	42	220	17.723750	6.049019	chr14	24422287	24423820	LINE|L2|L2b	-	chr14	24423164	24437425	STRG.66542.4	+	24423164,24430713,24431462,24432721,24432935,24436071,24436387,24437035	24423476,24430931,24432610,24432852,24433032,24436179,24436489,24437425	0.963636
transverse_colon_male_adult_54_years	chr19	15829094	15829095	15829094	+	High_confidence	236	246	264	21.268500	5.958780	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	0.897727
transverse_colon_male_adult_54_years	chr7	36661138	36661164	36661141	-	High_confidence	7	7	24	1.933500	4.084963	chr7	36661075	36661436	LTR|ERVL-MaLR|MLT1O	+	chr7	36513002	36661300	STRG.40053.4	-	36513002,36522038,36530417,36532146,36532285,36540318,36548611,36549438,36576573,36594338,36616379,36618296,36620780,36621709,36623189,36632035,36637850,36659165,36661042	36513380,36522115,36530514,36532206,36532344,36540491,36548686,36549475,36576656,36594430,36616474,36618345,36620829,36621780,36623250,36632106,36637910,36659265,36661300	0.625000
transverse_colon_male_adult_54_years	chr10	105644347	105644348	105644347	+	High_confidence	9	9	14	1.127875	2.835238	chr10	105644158	105644712	LTR|ERVL|MLT2B3	+	chr10	105644292	105683408	STRG.54629.1	+	105644292,105663803,105677192	105644626,105663936,105683408	1.000000
transverse_colon_male_adult_54_years	chr17	32684271	32684272	32684271	-	High_confidence	4	6	6	0.483375	2.584963	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32653863	32684284	MYO1D|ENST00000582217.1	-	32653863,32654476,32659114,32684174	32653947,32654621,32659338,32684284	0.833333
transverse_colon_male_adult_54_years	chr11	114648260	114648295	114648278	-	RAMPAGE_only	2	2	10	0.805625	2.947703	chr11	114648239	114648618	LTR|ERVL|MLT2B4	-	chr11	114640307	114651608	STRG.58958.19	-	114640307,114646916,114651162	114644382,114648345,114651608	0.900000
transverse_colon_male_adult_54_years	chr5	131224464	131224471	131224467	-	High_confidence	45	45	88	7.089500	5.616637	chr5	131224178	131224746	LINE|L2|L2	+	chr5	131209275	131224278	STRG.31301.1	-	131209275,131223948	131210153,131224278	0.863636
transverse_colon_male_adult_54_years	chrX	147937574	147937575	147937574	+	RAMPAGE_only	5	7	7	0.563938	2.521641	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147950315	STRG.92042.11	+	147940580,147944868,147945533,147948682	147943326,147945051,147945616,147950315	1.000000
transverse_colon_male_adult_54_years	chr14	68167231	68167247	68167237	-	RAMPAGE_only	12	17	42	3.383625	4.737323	chr14	68166677	68167265	LINE|L2|L2	+	chr14	68125003	68130196	AL133370.1|ENST00000554679.1	-	68125003,68130065	68125409,68130196	0.619048
transverse_colon_male_adult_54_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	10	10	10	0.805625	3.321928	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
transverse_colon_male_adult_54_years	chr1	180270112	180270130	180270129	+	RAMPAGE_only	5	5	11	0.886188	2.921928	chr1	180270174	180270263	SINE|MIR|MIR	+	chr1	180230297	180275053	LHX4|NM_033343.3	+	180230297,180248284,180266391,180271379,180271834,180274184	180230605,180248456,180266594,180271534,180272006,180275053	0.909091
transverse_colon_male_adult_54_years	chr12	57050719	57050720	57050719	-	High_confidence	45	54	54	4.350375	5.023225	chr12	57050705	57050920	SINE|MIR|MIRc	-	chr12	57028516	57050765	MYO1A|NM_001256041.1	-	57028516,57029131,57029434,57029739,57030209,57031039,57036306,57036771,57036941,57037547,57037868,57038411,57038808,57039211,57041183,57041431,57043071,57043239,57043855,57044105,57046551,57046862,57047060,57047302,57047626,57047988,57048209,57049886,57050717	57028881,57029259,57029587,57029872,57030316,57031174,57036381,57036840,57037091,57037641,57038069,57038638,57039009,57039274,57041288,57041497,57043158,57043358,57044003,57044209,57046650,57046926,57047107,57047407,57047721,57048104,57048343,57050106,57050765	0.944444
transverse_colon_male_adult_54_years	chr6	122803474	122803475	122803474	+	RAMPAGE_only	6	6	6	0.483375	2.584963	chr6	122803456	122803505	LINE|L2|L2b	+	chr6	122789169	122809720	SMPDL3A|ENST00000368440.4	+	122789169,122795676,122796823,122801309,122803663,122804908,122806232,122809090	122789458,122795890,122796968,122801406,122803833,122805089,122806357,122809720	1.000000
transverse_colon_male_adult_54_years	chr17	10843547	10843570	10843565	+	RAMPAGE_only	5	6	17	1.369563	3.454822	chr17	10843349	10843935	LTR|ERV1|LTR36	+	chr17	10844673	10880895	AC015908.2|ENST00000645807.1	+	10844673,10847891,10878369,10880471	10844964,10848045,10878524,10880895	0.705882
transverse_colon_male_adult_54_years	chr1	156282208	156282229	156282213	-	High_confidence	2	2	8	0.644500	2.521641	chr1	156282075	156282226	SINE|MIR|MIR3	-	chr1	156249223	156282890	SMG5|NM_001323616.1	-	156249223,156250857,156251402,156252413,156252918,156253448,156259004,156260450,156261332,156263394,156265780,156266540,156267469,156268114,156268289,156272319,156273360,156274596,156277084,156277924,156278935,156281792,156282606	156250670,156250996,156251477,156252504,156253078,156253508,156259163,156260626,156261408,156263570,156266380,156266678,156267678,156268183,156268415,156272398,156273450,156274686,156277241,156278048,156279034,156281924,156282890	0.750000
transverse_colon_male_adult_54_years	chr13	24348843	24348867	24348850	-	RAMPAGE_only	5	5	17	1.369563	3.499228	chr13	24348067	24350232	LTR|ERVL|ERVL-B4-int	-	chr13	24337903	24339360	STRG.63986.1	-	24337903	24339360	0.764706
transverse_colon_male_adult_54_years	chr6	31186084	31186118	31186117	-	High_confidence	67	69	128	10.312000	5.528062	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31181660	31186533	STRG.34062.11	-	31181660	31186533	0.921875
transverse_colon_male_adult_54_years	chr17	41797749	41797774	41797757	-	RAMPAGE_only	13	13	41	3.303063	4.045286	chr17	41797695	41797862	SINE|Alu|AluSz	-	chr17	41767400	41786931	JUP|ENST00000437187.5	-	41767400,41768968,41769417,41771646,41786797	41767580,41769207,41769677,41771862,41786931	0.780488
transverse_colon_male_adult_54_years	chr7	40808923	40808924	40808923	+	RAMPAGE_only	7	7	7	0.563938	2.807355	chr7	40808940	40809038	SINE|MIR|MIR3	+	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.714286
transverse_colon_male_adult_54_years	chr15	65244454	65244455	65244454	-	RAMPAGE_only	8	9	12	0.966750	2.913977	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.666667
transverse_colon_male_adult_54_years	chr18	7946878	7946888	7946878	+	High_confidence	20	21	36	2.900250	4.273684	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.777778
transverse_colon_male_adult_54_years	chr12	91179462	91179549	91179462	-	High_confidence	235	248	1231	99.172438	6.934510	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.718928
transverse_colon_male_adult_54_years	chr1	86549200	86549216	86549212	+	RAMPAGE_only	102	103	184	14.823500	6.219099	chr1	86549018	86549901	LINE|L2|L2a	-	chr1	86547077	86580754	CLCA4|ENST00000370563.3	+	86547077,86559931,86560210,86563660,86565273,86565801,86567423,86571076,86572613,86574539,86575331,86577901,86579353,86579941	86547278,86560072,86560358,86563769,86565451,86566020,86567651,86571254,86572720,86574755,86575599,86578072,86579587,86580754	0.733696
transverse_colon_male_adult_54_years	chrX	114059045	114059046	114059045	-	High_confidence	16	16	18	1.450125	3.038562	chrX	114059021	114059467	LTR|ERV1|LTR2	-	chrX	113961710	114059289	XACT|ENST00000649506.1	-	113961710,114042367,114059003	113963599,114042484,114059289	0.944444
transverse_colon_male_adult_54_years	chr15	100986785	100986803	100986802	+	RAMPAGE_only	7	7	19	1.530688	3.536887	chr15	100986493	100986911	LTR|ERVK|LTR22A	-	chr15	100924602	101069068	LRRK1|ENST00000525284.5	+	100924602,100973803,100983527,100988633,100989249,101008836,101010449,101010673,101012007,101014315,101015325,101021052,101021844,101022382,101024799,101025964,101027260,101027637,101028955,101045980,101048493,101049643,101051710,101052921,101053222,101054945,101056855,101057989,101061170,101062380,101065351,101066639,101068670	100924729,100973967,100983699,100988813,100989398,101009063,101010577,101010837,101012145,101014428,101015402,101021182,101021957,101022597,101024967,101026137,101027381,101027797,101029232,101046152,101048657,101049783,101051960,101053088,101053420,101055223,101057050,101058141,101061288,101062690,101066205,101066741,101069068	1.000000
transverse_colon_male_adult_54_years	chr15	92914950	92914959	92914958	+	RAMPAGE_only	3	6	9	0.725063	2.947703	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92924277	92997069	CHD2|ENST00000637572.1	+	92924277,92927243,92929029,92937517,92939577,92941821,92942842,92944414,92945820,92946037,92948951,92953356,92955422,92956458,92967324,92971764,92972264,92974878,92978233,92979134,92980814,92981364,92984329,92985497,92991475,92992858,92996956	92924552,92927330,92929091,92937625,92939718,92941955,92943068,92944515,92945865,92946216,92949076,92954336,92955512,92956649,92967513,92971927,92972417,92974950,92978383,92979283,92980911,92981457,92984500,92985673,92991517,92992998,92997069	0.666667
transverse_colon_male_adult_54_years	chr13	54572234	54572235	54572234	+	High_confidence	26	28	33	2.658563	4.476064	chr13	54572234	54573121	LINE|L1|L1HS	+	chr13	54572241	54582409	STRG.65086.1	+	54572241,54581570	54572379,54582409	0.969697
transverse_colon_male_adult_54_years	chr3	125774662	125774700	125774662	+	High_confidence	3	4	10	0.805625	2.721928	chr3	125774578	125774774	DNA|hAT-Charlie|MER58A	+	chr3	125774713	125797953	AC092902.3|ENST00000610060.1	+	125774713,125797774	125774907,125797953	0.800000
transverse_colon_male_adult_54_years	chr3	33864073	33864119	33864115	+	RAMPAGE_only	5	6	18	1.450125	3.572431	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33798574	33869680	PDCD6IP|ENST00000648706.1	+	33798574,33812071,33813558,33821954,33825186,33826479,33827621,33828837,33836043,33838203,33841896,33844111,33845418,33852487,33853878,33855165,33864005,33865242,33866350	33798937,33812126,33813628,33822082,33825340,33826580,33827739,33828969,33836266,33838327,33842074,33844223,33845588,33852736,33854013,33855260,33864129,33865430,33869680	1.000000
transverse_colon_male_adult_54_years	chr4	81153824	81153856	81153824	-	High_confidence	3	3	11	0.886188	2.732159	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81087369	81153732	PRKG2|ENST00000545647.5	-	81087369,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153429,81153643	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153555,81153732	1.000000
transverse_colon_male_adult_54_years	chr2	47369308	47369311	47369310	+	High_confidence	318	401	466	37.542125	5.111600	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369147	47387028	EPCAM|NM_002354.2	+	47369147,47373462,47373807,47375233,47377013,47378952,47379768,47385165,47386571	47369581,47373570,47374048,47375299,47377077,47379054,47379969,47385210,47387028	0.995708
transverse_colon_male_adult_54_years	chr7	29376372	29376394	29376393	+	RAMPAGE_only	10	11	22	1.772375	3.572624	chr7	29376417	29376587	DNA|hAT-Charlie|MER5A	+	chr7	29396647	29401281	CHN2|ENST00000491856.1	+	29396647,29400542	29398486,29401281	0.909091
transverse_colon_male_adult_54_years	chr6	79631242	79631329	79631302	+	High_confidence	97	98	584	47.048500	6.698690	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.986301
transverse_colon_male_adult_54_years	chr4	4031694	4031728	4031694	+	RAMPAGE_only	6	6	20	1.611250	3.884184	chr4	4031112	4033931	LTR|ERV1|HERVS71-int	-	chr4	4071958	4075178	STRG.22605.3	+	4071958	4075178	0.500000
transverse_colon_male_adult_54_years	chr20	8600640	8600661	8600640	+	High_confidence	4	4	10	0.805625	2.646439	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	1.000000
transverse_colon_male_adult_54_years	chr9	123054992	123055005	123054992	+	RAMPAGE_only	3	3	7	0.563938	2.521641	chr9	123054433	123055214	LINE|L1|L1MC3	-	chr9	123033666	123074317	RABGAP1|ENST00000475607.1	+	123033666,123065347,123070349,123073551,123074284	123033742,123065601,123070424,123073677,123074317	0.857143
transverse_colon_male_adult_54_years	chr19	44744925	44744996	44744940	+	High_confidence	7	7	39	3.141938	4.753226	chr19	44744681	44744974	SINE|Alu|AluJo	+	chr19	44744933	44759825	STRG.83218.1	+	44744933,44747837,44748694,44751226,44756231,44757016,44757326,44757645,44758245,44758723,44759427	44745137,44748128,44749046,44751380,44756340,44757221,44757415,44757723,44758413,44758841,44759825	0.564103
transverse_colon_male_adult_54_years	chr5	176216369	176216392	176216382	-	RAMPAGE_only	5	6	16	1.289000	3.506891	chr5	176216196	176218144	LTR|ERV1|MER83A-int	+	chr5	176203803	176204928	STRG.32762.2	-	176203803	176204928	0.750000
transverse_colon_male_adult_54_years	chr6	44126632	44126633	44126632	+	High_confidence	43	46	56	4.511500	4.867457	chr6	44126578	44126686	LINE|CR1|X7A_LINE	-	chr6	44126630	44140328	STRG.34622.4	+	44126630,44126797,44134560,44135016,44135327,44136348,44138479,44139466,44139707,44140251	44126715,44127141,44134743,44135096,44135366,44136439,44138517,44139609,44139759,44140328	0.964286
transverse_colon_male_adult_54_years	chr1	1655409	1655410	1655409	-	RAMPAGE_only	8	8	12	0.966750	3.251629	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.916667
transverse_colon_male_adult_54_years	chr1	43537671	43537684	43537683	+	RAMPAGE_only	14	14	37	2.980813	4.739098	chr1	43537442	43537857	LINE|L2|L2b	-	chr1	43530889	43622357	PTPRF|ENST00000438120.5	+	43530889,43538197,43545030,43553491,43553799,43569589,43578809,43588730,43590971,43591811,43592456,43597747,43598719,43603415,43603610,43604902,43605189,43605528,43606239,43606813,43609382,43613617,43617444,43617735,43618629,43619047,43619287,43619679,43620094,43620453,43620837,43621096,43621934	43531090,43538277,43545166,43553637,43553941,43569778,43578920,43589000,43591553,43591948,43592601,43598053,43598913,43603533,43604189,43605000,43605443,43605622,43606458,43606968,43609498,43613715,43617568,43617911,43618749,43619202,43619573,43619858,43620221,43620579,43620992,43621232,43622357	0.540541
transverse_colon_male_adult_54_years	chr1	2048517	2048551	2048549	+	RAMPAGE_only	4	6	14	1.127875	3.235926	chr1	2048414	2048562	LINE|L2|L2a	-	chr1	2050469	2185395	PRKCZ|ENST00000378567.7	+	2050469,2055440,2056483,2059540,2135261,2144209,2146026,2148871,2150789,2155994,2169517,2172054,2172300,2173896,2174753,2175223,2184582,2184921	2050701,2055562,2056573,2059591,2135347,2144341,2146108,2148924,2150978,2156092,2169604,2172190,2172388,2174016,2174833,2175313,2184698,2185395	0.857143
transverse_colon_male_adult_54_years	chr3	180870518	180870521	180870518	-	High_confidence	5	6	11	0.886188	3.459432	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180707588	180870178	LOC101928882|NR_109986.1	-	180707588,180711192,180711309,180725514,180733478,180734486,180737492,180747879,180748245,180751347,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180733682,180734606,180737814,180748043,180748319,180751410,180782124,180810470,180847624,180870178	0.727273
transverse_colon_male_adult_54_years	chr1	149229360	149229369	149229367	-	RAMPAGE_only	15	23	37	2.980813	4.550953	chr1	149229335	149229457	SINE|MIR|MIR3	+	chr1	149190264	149285960	STRG.4824.1	-	149190264,149197995,149198360,149201013,149240376,149261639,149266968,149285453	149190531,149198171,149198484,149201090,149240487,149261791,149267024,149285960	0.864865
transverse_colon_male_adult_54_years	chr17	4143186	4143209	4143199	+	High_confidence	35	38	100	8.056250	5.356495	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.990000
transverse_colon_male_adult_54_years	chr1	19384882	19384889	19384882	-	RAMPAGE_only	6	7	14	1.127875	2.807355	chr1	19384800	19385021	LINE|L2|L2c	+	chr1	19374174	19485488	CAPZB|ENST00000482808.1	-	19374174,19378539,19385504,19419660,19485435	19374455,19378653,19385626,19419750,19485488	0.714286
transverse_colon_male_adult_54_years	chr9	18702070	18702071	18702070	-	High_confidence	6	7	9	0.725063	2.750000	chr9	18701896	18702263	LTR|ERVL-MaLR|THE1B	-	chr9	18657346	18702057	STRG.48368.1	-	18657346,18670172,18694347,18701979	18657739,18670287,18694419,18702057	0.666667
transverse_colon_male_adult_54_years	chr3	124631226	124631243	124631242	+	RAMPAGE_only	9	11	19	1.530688	3.572431	chr3	124631189	124632228	LINE|L2|L2a	+	chr3	124584681	124650915	KALRN|ENST00000454902.1	+	124584681,124632419,124633848,124650807	124584906,124632703,124633953,124650915	0.894737
transverse_colon_male_adult_54_years	chr8	11795578	11795579	11795578	+	High_confidence	33	33	34	2.739125	2.930800	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.970588
transverse_colon_male_adult_54_years	chr4	121074204	121074242	121074235	+	High_confidence	17	19	108	8.700750	5.729889	chr4	121073822	121075070	LINE|L2|L2c	-	chr4	121074179	121081926	STRG.26022.1	+	121074179	121081926	0.759259
transverse_colon_male_adult_54_years	chr9	69099420	69099426	69099425	-	High_confidence	3	3	7	0.563938	2.807355	chr9	69099147	69099440	SINE|Alu|AluSz6	+	chr9	69088549	69099420	STRG.49661.1	-	69088549,69098996	69088782,69099420	1.000000
transverse_colon_male_adult_54_years	chr3	37987981	37987994	37987989	+	High_confidence	118	126	416	33.514000	6.755639	chr3	37987850	37988363	LINE|L2|L2b	-	chr3	37988058	38007188	VILL|ENST00000283713.10	+	37988058,37993586,37993897,37994260,37995738,37997076,37997482,37998089,37998265,37998911,37999338,38001455,38001701,38002395,38003167,38004254,38005791,38006180,38006448,38006941	37988238,37993732,37993972,37994466,37995847,37997187,37997685,37998168,37998364,37999050,37999439,38001593,38001860,38002575,38003313,38004399,38005974,38006252,38006700,38007188	0.867788
transverse_colon_male_adult_54_years	chr17	59619894	59619923	59619894	+	High_confidence	454	527	1560	125.677500	6.213686	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.978846
transverse_colon_male_adult_54_years	chr5	131225541	131225664	131225541	+	High_confidence	75	76	310	24.974375	6.606395	chr5	131225381	131226063	LTR|ERVL|ERVL-E-int	+	chr5	131225441	131394667	STRG.31304.1	+	131225441,131232921,131255094,131256076,131258894,131315975,131359208,131385542,131390992,131391828	131225846,131245599,131255229,131256192,131258972,131316144,131359547,131385644,131391108,131394667	0.735484
transverse_colon_male_adult_54_years	chr5	140655985	140655987	140655985	+	RAMPAGE_only	8	11	14	1.127875	3.546594	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.928571
transverse_colon_male_adult_54_years	chr4	132262900	132262903	132262900	+	RAMPAGE_only	30	30	47	3.786438	3.717940	chr4	132262711	132263100	LTR|ERVL-MaLR|MSTA	+	chr4	132295205	132295647	STRG.26202.1	+	132295205	132295647	0.617021
transverse_colon_male_adult_54_years	chr21	28048446	28048447	28048446	+	High_confidence	72	74	81	6.525563	4.044330	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.975309
transverse_colon_male_adult_54_years	chr5	131224107	131224157	131224107	-	High_confidence	16	21	72	5.800500	5.229841	chr5	131223718	131224171	LINE|L2|L2-3_Crp	+	chr5	131209275	131224278	STRG.31301.1	-	131209275,131223948	131210153,131224278	0.805556
transverse_colon_male_adult_54_years	chr2	9744725	9744791	9744736	+	High_confidence	9	9	71	5.719938	4.954822	chr2	9744526	9744746	DNA|hAT-Charlie|Charlie23a	+	chr2	9744743	9748977	STRG.8643.1	+	9744743,9745804	9744970,9748977	0.760563
transverse_colon_male_adult_54_years	chr16	2205814	2205835	2205823	+	High_confidence	6	6	17	1.369563	3.625000	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.882353
transverse_colon_male_adult_54_years	chr7	158863386	158863402	158863386	+	High_confidence	3	3	10	0.805625	2.725481	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158863548	158871499	STRG.44103.7	+	158863548,158869854,158871141	158863575,158869908,158871499	0.900000
transverse_colon_male_adult_54_years	chr16	19430417	19430472	19430417	+	RAMPAGE_only	3	3	16	1.289000	3.702820	chr16	19430397	19430533	LINE|RTE-X|L4_B_Mam	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	0.937500
transverse_colon_male_adult_54_years	chr2	61962595	61962615	61962595	+	RAMPAGE_only	2	2	9	0.725063	2.725481	chr2	61962268	61962878	LTR|ERVL|MER77B	+	chr2	61905646	62136247	COMMD1|ENST00000311832.5	+	61905646,62000700,62135830	61905858,62000982,62136247	1.000000
transverse_colon_male_adult_54_years	chr11	67886517	67886535	67886517	+	High_confidence	15	15	33	2.658563	3.855931	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.939394
transverse_colon_male_adult_54_years	chr4	11722458	11722488	11722458	+	High_confidence	3	3	18	1.450125	3.836592	chr4	11722242	11722729	LTR|ERVL-MaLR|MLT1F1	+	chr4	11722440	11724371	STRG.22810.1	+	11722440	11724371	0.777778
transverse_colon_male_adult_54_years	chr10	69232572	69232593	69232587	+	High_confidence	20	29	104	8.378500	5.357173	chr10	69232519	69232745	SINE|MIR|MIRb	+	chr10	69232582	69267559	STRG.53340.2	+	69232582,69239041,69240651,69242894,69246078,69247359,69248423,69250289,69250532,69257035,69257326,69258775,69261138,69262057,69265584,69266609	69233133,69239137,69240751,69243365,69246234,69247593,69248728,69250435,69250652,69257131,69257426,69258959,69261294,69262188,69265818,69267559	0.932692
transverse_colon_male_adult_54_years	chr1	75375885	75375937	75375885	-	High_confidence	8	8	36	2.900250	4.272140	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75202132	75376022	STRG.2944.1	-	75202132,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75375815	75203833,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75376022	0.666667
transverse_colon_male_adult_54_years	chr3	135965673	135965749	135965723	+	High_confidence	27	35	236	19.012750	5.982398	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.974576
transverse_colon_male_adult_54_years	chr6	25753299	25753356	25753299	+	RAMPAGE_only	5	5	21	1.691813	4.011365	chr6	25753191	25754237	LINE|L2|L2	-	chr6	25754698	25781174	STRG.33676.11	+	25754698,25760296,25761926,25768984,25773512,25776594,25779053	25754781,25760362,25762053,25773393,25773674,25778016,25781174	0.761905
transverse_colon_male_adult_54_years	chr2	230877665	230877683	230877682	-	High_confidence	11	12	31	2.497438	4.418157	chr2	230877651	230877880	SINE|MIR|MIR	-	chr2	230874939	230877728	STRG.15639.2	-	230874939,230875928,230877411	230875697,230876272,230877728	0.677419
transverse_colon_male_adult_54_years	chr19	17336685	17336686	17336685	+	High_confidence	13	14	15	1.208438	3.189898	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.600000
transverse_colon_male_adult_54_years	chr2	48479481	48479482	48479481	+	RAMPAGE_only	5	6	7	0.563938	2.521641	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48471310	48498501	PPP1R21|ENST00000455978.1	+	48471310,48474682,48479483,48479923,48486630,48491017,48495678,48498492	48471367,48474819,48479556,48480016,48486758,48491170,48495771,48498501	0.857143
transverse_colon_male_adult_54_years	chr19	5847518	5847519	5847518	+	High_confidence	30	32	32	2.578000	4.256565	chr19	5847388	5847625	LTR|ERV1|LTR7B	+	chr19	5847528	5848741	STRG.81380.1	+	5847528	5848741	0.906250
transverse_colon_male_adult_54_years	chr12	13376643	13376730	13376665	-	High_confidence	33	34	145	11.681563	6.330707	chr12	13376413	13376888	LTR|ERVL|MLT2B1	-	chr12	13371088	13376675	STRG.60319.3	-	13371088,13376223,13376513	13375064,13376425,13376675	0.951724
transverse_colon_male_adult_54_years	chr3	19702552	19702586	19702583	-	High_confidence	2	3	8	0.644500	2.750000	chr3	19702399	19703772	LTR|ERV1|LTR12C	+	chr3	19484282	19702882	STRG.16989.1	-	19484282,19615974,19700927,19702342	19484752,19616053,19700985,19702882	1.000000
transverse_colon_male_adult_54_years	chr15	58528575	58528604	58528582	+	High_confidence	6	6	20	1.611250	3.426367	chr15	58528515	58528670	SINE|Alu|AluJb	-	chr15	58528535	58564008	STRG.70988.2	+	58528535,58538332,58541784,58542533,58545741,58548329,58560863,58563504	58528959,58538517,58541967,58542651,58545975,58548572,58560981,58564008	0.750000
transverse_colon_male_adult_54_years	chr3	134057707	134057752	134057707	-	High_confidence	3	3	18	1.450125	3.499228	chr3	134057661	134057803	DNA|hAT-Ac|OldhAT1	-	chr3	134055249	134057648	LOC100507210|NR_135574.1	-	134055249,134057409	134055660,134057648	0.555556
transverse_colon_male_adult_54_years	chr9	128684459	128684480	128684459	-	High_confidence	11	11	46	3.705875	4.689550	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683006	128684461	STRG.51481.1	-	128683006	128684461	0.869565
transverse_colon_male_adult_54_years	chr6	122749158	122749189	122749158	+	RAMPAGE_only	2	2	19	1.530688	3.836592	chr6	122748804	122749262	LTR|ERV1|LTR2	-	chr6	122761869	122764391	STRG.36786.1	+	122761869	122764391	0.578947
transverse_colon_male_adult_54_years	chr13	52159809	52159832	52159809	-	High_confidence	8	8	18	1.450125	3.683542	chr13	52159786	52159872	SINE|MIR|MIRc	+	chr13	52132642	52159861	NEK3|ENST00000610828.4	-	52132642,52133688,52135728,52136115,52136799,52141019,52143914,52144690,52148414,52151145,52151324,52152608,52153894,52154079,52156074,52159542	52133226,52133815,52135863,52136259,52136902,52141069,52143987,52144891,52148469,52151232,52151392,52152692,52153992,52154173,52156248,52159861	1.000000
transverse_colon_male_adult_54_years	chr3	114624984	114625007	114625006	-	High_confidence	4	4	12	0.966750	3.084963	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.666667
transverse_colon_male_adult_54_years	chr4	142566075	142566101	142566075	+	High_confidence	5	7	15	1.208438	2.556657	chr4	142566070	142566604	LINE|L2|L2c	-	chr4	142566018	142660950	AC139720.1|ENST00000509497.1	+	142566018,142583451,142660782	142566190,142583623,142660950	0.666667
transverse_colon_male_adult_54_years	chr4	2036471	2036572	2036571	+	High_confidence	62	67	324	26.102250	5.102136	chr4	2036585	2036842	LTR|ERVL|ERVL-E-int	+	chr4	2036508	2043964	STRG.22537.3	+	2036508,2039996,2040863,2042326,2042735,2043860	2037183,2040092,2042175,2042484,2042824,2043964	0.990741
transverse_colon_male_adult_54_years	chr1	46181632	46181644	46181643	+	RAMPAGE_only	20	21	76	6.122750	5.251696	chr1	46181615	46181833	LINE|L2|L2b	-	chr1	46180378	46184882	STRG.1858.7	+	46180378,46181099,46184593,46184784	46180658,46184397,46184668,46184882	0.763158
transverse_colon_male_adult_54_years	chr16	2757801	2757891	2757810	+	High_confidence	13	14	91	7.331188	5.339875	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2761707	STRG.73183.3	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746,2760300,2761560	2757945,2758547,2759047,2759172,2759402,2759661,2760008,2760499,2761707	1.000000
transverse_colon_male_adult_54_years	chr8	144427932	144427957	144427932	+	High_confidence	10	10	26	2.094625	3.833270	chr8	144427788	144427946	LINE|L2|L2	-	chr8	144427945	144431089	STRG.47649.1	+	144427945	144431089	0.615385
transverse_colon_male_adult_54_years	chr11	3477049	3477068	3477055	-	RAMPAGE_only	18	19	72	5.800500	4.996588	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3474073	3479187	STRG.55534.1	-	3474073	3479187	0.986111
transverse_colon_male_adult_54_years	chr19	16082029	16082046	16082045	+	High_confidence	4	4	9	0.725063	2.947703	chr19	16082077	16082207	SINE|MIR|MIRb	+	chr19	16081722	16093581	TPM4|ENST00000592138.5	+	16081722,16086422,16088026,16089044,16093535	16082046,16086540,16088097,16089120,16093581	0.777778
transverse_colon_male_adult_54_years	chr3	12994717	12994740	12994739	-	High_confidence	3	5	9	0.725063	2.500000	chr3	12994635	12994703	SINE|MIR|MIRc	-	chr3	12908348	12994384	IQSEC1|ENST00000648386.1	-	12908348,12909272,12911628,12913427,12915103,12915593,12920429,12922119,12924580,12935447,12941570,12994080	12908525,12909434,12911728,12913553,12915133,12915733,12920596,12922242,12924742,12936697,12941865,12994384	0.888889
transverse_colon_male_adult_54_years	chr17	43872296	43872297	43872296	+	High_confidence	65	66	80	6.445000	5.201003	chr17	43871996	43872421	LTR|ERVK|LTR3B_	+	chr17	43872280	43873187	STRG.77811.1	+	43872280	43873187	0.825000
transverse_colon_male_adult_54_years	chr11	64242611	64242620	64242619	+	High_confidence	43	46	108	8.700750	5.634575	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.981481
transverse_colon_male_adult_54_years	chr3	197299307	197299317	197299316	-	High_confidence	7	8	17	1.369563	3.327820	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.882353
transverse_colon_male_adult_54_years	chr14	57274833	57274834	57274833	+	RAMPAGE_only	9	9	13	1.047313	3.085055	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	1.000000
transverse_colon_male_adult_54_years	chr1	19344364	19344410	19344388	-	RAMPAGE_only	6	6	16	1.289000	3.155639	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.812500
transverse_colon_male_adult_54_years	chr4	4269609	4269614	4269609	-	High_confidence	23	25	50	4.028125	3.170756	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.960000
transverse_colon_male_adult_54_years	chr15	40856285	40856322	40856321	+	RAMPAGE_only	7	8	27	2.175188	3.873141	chr15	40856350	40856491	DNA|hAT-Charlie|MER117	+	chr15	40854209	40857123	SPINT1|ENST00000563135.5	+	40854209,40854638,40855891,40856275,40856769	40854522,40854689,40856062,40856323,40857123	0.814815
transverse_colon_male_adult_54_years	chr5	176411458	176411459	176411458	-	RAMPAGE_only	7	8	10	0.805625	2.947703	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392641	176416261	CLTB|ENST00000508425.5	-	176392641,176397943,176410256,176416176	176392932,176398047,176410303,176416261	0.800000
transverse_colon_male_adult_54_years	chrX	114059281	114059289	114059288	-	High_confidence	54	56	99	7.975688	5.527401	chrX	114059021	114059467	LTR|ERV1|LTR2	-	chrX	113961710	114059289	XACT|ENST00000649506.1	-	113961710,114042367,114059003	113963599,114042484,114059289	0.868687
transverse_colon_male_adult_54_years	chr17	28234014	28234046	28234014	-	High_confidence	4	4	18	1.450125	3.337175	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232116	28233993	STRG.77172.1	-	28232116,28233917	28233342,28233993	0.944444
transverse_colon_male_adult_54_years	chr13	50083119	50083133	50083132	+	High_confidence	4	5	11	0.886188	3.121928	chr13	50083020	50083238	SINE|MIR|MIRb	-	chr13	50082170	50107218	DLEU1|ENST00000469754.2	+	50082170,50083141,50104703	50082557,50083194,50107218	0.909091
transverse_colon_male_adult_54_years	chr2	36513756	36513758	36513756	+	High_confidence	6	9	13	1.047313	2.873141	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.769231
transverse_colon_male_adult_54_years	chr4	148636749	148636750	148636749	-	RAMPAGE_only	8	8	8	0.644500	2.500000	chr4	148636398	148636754	LTR|ERVL-MaLR|THE1A	-	chr4	148610854	148680557	STRG.26731.6	-	148610854,148644525	148644505,148680557	1.000000
transverse_colon_male_adult_54_years	chr16	15740056	15740152	15740077	-	RAMPAGE_only	12	12	51	4.108688	4.922138	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	1.000000
transverse_colon_male_adult_54_years	chr4	158173024	158173027	158173024	-	High_confidence	31	32	49	3.947563	4.912782	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158130799	158173014	STRG.27222.3	-	158130799,158155610,158170465,158172872	158131012,158155825,158171599,158173014	0.979592
transverse_colon_male_adult_54_years	chr4	121074064	121074072	121074071	-	RAMPAGE_only	4	4	8	0.644500	2.521641	chr4	121073822	121075070	LINE|L2|L2c	-	chr4	121035612	121072518	NDNF|ENST00000379692.8	-	121035612,121039929,121045649,121071992	121037657,121040054,121045838,121072518	0.875000
transverse_colon_male_adult_54_years	chr14	93050993	93051038	93051015	-	RAMPAGE_only	5	5	23	1.852938	3.468577	chr14	93050957	93051066	LINE|L2|L2b	+	chr14	92962831	93036974	ITPK1|ENST00000553655.1	-	92962831,92993879,93016675,93036846	92962849,92993997,93016801,93036974	0.652174
transverse_colon_male_adult_54_years	chr2	10602280	10602316	10602315	-	RAMPAGE_only	3	3	8	0.644500	2.750000	chr2	10602211	10602350	LTR|ERVL|LTR50	+	chr2	10571654	10689967	NOL10|ENST00000381685.9	-	10571654,10577635,10589042,10589577,10600852,10602775,10603077,10607184,10644319,10654480,10657741,10659171,10662958,10667217,10668657,10671553,10673519,10675793,10681970,10684566,10689795	10572190,10577738,10589290,10589751,10600942,10602874,10603157,10607311,10644372,10654547,10657891,10659250,10663044,10667278,10668723,10671690,10673557,10675871,10682069,10684612,10689967	0.625000
transverse_colon_male_adult_54_years	chr12	31757094	31757097	31757094	-	High_confidence	3	4	9	0.725063	2.500000	chr12	31756862	31757481	LTR|ERV1|LTR8B	-	chr12	31750344	31757087	STRG.60901.2	-	31750344,31753147,31756871	31752737,31753336,31757087	0.888889
transverse_colon_male_adult_54_years	chr7	116239250	116239253	116239250	-	High_confidence	9	12	16	1.289000	3.577820	chr7	116238900	116239327	LTR|ERVL-MaLR|MLT1E2	-	chr7	116237928	116239249	AC073130.2|ENST00000456289.5	-	116237928,116239014	116238276,116239249	0.750000
transverse_colon_male_adult_54_years	chr5	23951328	23951356	23951355	+	High_confidence	5	5	13	1.047313	3.251629	chr5	23951094	23952511	LTR|ERV1|LTR12C	+	chr5	23951357	23978324	STRG.28205.1	+	23951357,23975996,23977780	23951803,23976050,23978324	0.846154
transverse_colon_male_adult_54_years	chr4	75127193	75127252	75127224	-	RAMPAGE_only	28	40	163	13.131688	5.528244	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.803681
transverse_colon_male_adult_54_years	chr11	24932568	24932600	24932568	+	High_confidence	5	6	23	1.852938	3.970573	chr11	24931536	24933353	LINE|L1|L1PB1	-	chr11	24932560	25082525	STRG.56406.1	+	24932560,24976590,24983125,25050037,25077328,25078553	24932688,24976665,24983293,25050130,25077406,25082525	0.826087
transverse_colon_male_adult_54_years	chr8	75324606	75324732	75324664	-	High_confidence	5	5	37	2.980813	4.259149	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223702	75324741	CASC9|ENST00000522183.1	-	75223702,75324564	75224358,75324741	0.513514
transverse_colon_male_adult_54_years	chr7	6990719	6990730	6990729	+	High_confidence	21	25	52	4.189250	4.623214	chr7	6989229	6992060	LTR|ERV1|HERVS71-int	-	chr7	6990697	7006009	STRG.38976.1	+	6990697	7006009	0.730769
transverse_colon_male_adult_54_years	chr12	127060613	127060614	127060613	+	High_confidence	219	253	278	22.396375	5.999950	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060474	127150081	STRG.63708.2	+	127060474,127119553,127145711	127061334,127120525,127150081	0.974820
transverse_colon_male_adult_54_years	chr6	36540276	36540277	36540276	-	RAMPAGE_only	31	31	31	2.497438	4.220168	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36547470	STK38|ENST00000229812.7	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540207,36547470	0.935484
transverse_colon_male_adult_54_years	chr3	139344535	139344548	139344547	+	High_confidence	57	57	114	9.184125	5.033943	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.964912
transverse_colon_male_adult_54_years	chr16	23764583	23764607	23764583	+	High_confidence	5	6	16	1.289000	3.030639	chr16	23764599	23764788	SINE|MIR|MIR1_Amn	+	chr16	23764766	23765574	STRG.74287.1	+	23764766	23765574	0.562500
transverse_colon_male_adult_54_years	chr3	37058880	37058907	37058906	-	RAMPAGE_only	3	3	8	0.644500	2.750000	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	1.000000
transverse_colon_male_adult_54_years	chr10	65570509	65570529	65570519	+	High_confidence	13	20	79	6.364438	5.473763	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570526	65617073	STRG.53153.1	+	65570526,65571424,65572934,65585484,65615635	65570759,65571579,65573056,65585802,65617073	0.721519
transverse_colon_male_adult_54_years	chr4	86453195	86453211	86453195	-	High_confidence	6	6	22	1.772375	3.200910	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016074	86453196	MAPK10|ENST00000641854.1	-	86016074,86029196,86031367,86064265,86067772,86089205,86101051,86101893,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86089277,86101217,86102032,86107352,86159467,86194407,86354644,86453196	0.954545
transverse_colon_male_adult_54_years	chr22	46578331	46578332	46578331	+	RAMPAGE_only	25	25	30	2.416875	3.952303	chr22	46578347	46578471	SINE|MIR|MIRc	+	chr22	46576011	46637936	GRAMD4|ENST00000447351.5	+	46576011,46626750,46637839	46576078,46626961,46637936	0.666667
transverse_colon_male_adult_54_years	chr2	241372940	241372950	241372949	+	High_confidence	9	9	21	1.691813	3.232102	chr2	241372927	241373003	LINE|L1|L1MC4a	-	chr2	241372848	241403923	FARP2|ENST00000445489.1	+	241372848,241403827	241373290,241403923	0.809524
transverse_colon_male_adult_54_years	chr5	131224546	131224568	131224567	-	High_confidence	6	8	12	0.966750	3.095795	chr5	131224178	131224746	LINE|L2|L2	+	chr5	131209275	131224748	STRG.31301.2	-	131209275,131224360	131210153,131224748	0.833333
transverse_colon_male_adult_54_years	chr18	46087012	46087066	46087042	-	High_confidence	8	8	36	2.900250	4.326466	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.972222
transverse_colon_male_adult_54_years	chr19	35115816	35115923	35115844	+	High_confidence	590	616	4025	324.264064	7.562105	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.912795
transverse_colon_male_adult_54_years	chr1	222615749	222615754	222615753	+	RAMPAGE_only	4	5	10	0.805625	2.947703	chr1	222615172	222615888	LINE|L2|L2a	-	chr1	222618085	222668012	MIA3|ENST00000344922.9	+	222618085,222621158,222624767,222627574,222632164,222633103,222645553,222648828,222650291,222650633,222650792,222651976,222652227,222653007,222653227,222654242,222654388,222654654,222658721,222659452,222659621,222659733,222659905,222660176,222662055,222662252,222663997,222665308	222618243,222621292,222624854,222630389,222632326,222633249,222645685,222648850,222650380,222650711,222650903,222652048,222652332,222653130,222653339,222654298,222654479,222654793,222658823,222659513,222659657,222659801,222660006,222660314,222662124,222662332,222664148,222668012	0.900000
transverse_colon_male_adult_54_years	chr12	127944402	127944408	127944402	+	High_confidence	10	10	24	1.933500	3.501629	chr12	127943789	127944506	LTR|ERV1|LTR8	-	chr12	127944416	127951551	STRG.63722.1	+	127944416,127944717,127949973	127944443,127944799,127951551	0.500000
transverse_colon_male_adult_54_years	chr8	100336260	100336318	100336308	+	High_confidence	30	33	88	7.089500	5.150812	chr8	100336300	100336359	DNA|hAT-Charlie|MER102b	-	chr8	100336244	100336922	STRG.46437.1	+	100336244	100336922	0.784091
transverse_colon_male_adult_54_years	chr15	76576920	76577011	76576995	-	High_confidence	10	18	110	8.861875	5.510386	chr15	76576480	76577164	LINE|L1|L1MA3	+	chr15	76471261	76576985	SCAPER|ENST00000569784.1	-	76471261,76504858,76567269,76574157,76576858	76471335,76504974,76567405,76574284,76576985	0.727273
transverse_colon_male_adult_54_years	chr1	230601541	230601545	230601541	+	High_confidence	543	545	808	65.094500	5.943814	chr1	230601215	230601646	LTR|ERV1|LTR7	+	chr1	230601551	230609572	STRG.7752.1	+	230601551,230606180	230601794,230609572	0.912129
transverse_colon_male_adult_54_years	chr4	184343887	184343888	184343887	-	High_confidence	4	4	7	0.563938	2.807355	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184340561	184343967	STRG.27656.1	-	184340561,184343826	184342053,184343967	0.714286
transverse_colon_male_adult_54_years	chr9	74848113	74848181	74848147	-	High_confidence	41	45	103	8.297938	5.376061	chr9	74847872	74848586	DNA|TcMar-Tigger|MER44C	-	chr9	74723924	74848175	STRG.49803.4	-	74723924,74728238,74732684,74738406,74739366,74739722,74742560,74744094,74747888,74750663,74752276,74755352,74761695,74761998,74771702,74775882,74782361,74782678,74785873,74788613,74792623,74796740,74800253,74801897,74803793,74808033,74810814,74812298,74816668,74816891,74820303,74821668,74827777,74833997,74840023,74842165,74847889	74724746,74728345,74732736,74738612,74739449,74740009,74742626,74744145,74747914,74750722,74752368,74755473,74761808,74763134,74771835,74776076,74782476,74782853,74786125,74788742,74792770,74796893,74800482,74802175,74803886,74808174,74810868,74812433,74816769,74816964,74820427,74821837,74827949,74834122,74840237,74842343,74848175	0.815534
transverse_colon_male_adult_54_years	chr7	134527800	134527816	134527815	+	High_confidence	6	6	18	1.450125	3.130718	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527619	134537087	AKR1B10|ENST00000475559.1	+	134527619,134530642,134531907,134533003,134535616,134536708,134537050	134527977,134530810,134532024,134533081,134535663,134536772,134537087	0.722222
transverse_colon_male_adult_54_years	chr12	93019680	93019689	93019688	-	High_confidence	9	9	21	1.691813	3.916127	chr12	93019136	93019733	DNA|TcMar-Tigger|Tigger12c	-	chr12	93019260	93019687	STRG.62623.1	-	93019260	93019687	0.761905
transverse_colon_male_adult_54_years	chr15	45645895	45645974	45645902	+	High_confidence	8	11	43	3.464188	4.140585	chr15	45645871	45646155	DNA|hAT-Tip100|Arthur1C	+	chr15	45645880	45669946	SQOR|ENST00000561493.5	+	45645880,45658906,45661954,45669927	45646008,45659157,45662125,45669946	0.790698
transverse_colon_male_adult_54_years	chr5	34244811	34244819	34244818	-	High_confidence	3	3	8	0.644500	2.521641	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34154095	34244796	STRG.28422.16	-	34154095,34175444,34175821,34179012,34182679,34218294,34239374,34244615	34169153,34175537,34175957,34179097,34182867,34218450,34239448,34244796	0.875000
transverse_colon_male_adult_54_years	chr12	72432475	72432482	72432481	+	High_confidence	43	84	148	11.923250	5.894097	chr12	72432166	72432618	LTR|ERVK|LTR22A	-	chr12	72432466	72670845	STRG.62158.1	+	72432466,72469757,72473066,72499497,72542290,72562164,72562852,72568567,72575254,72575486,72618890,72621107,72621643,72652321,72653015,72656926,72663051	72432566,72469912,72473180,72499635,72542356,72562230,72563040,72568656,72575388,72575542,72619038,72621205,72621751,72652489,72653156,72657008,72670845	0.824324
transverse_colon_male_adult_54_years	chr7	140260535	140260568	140260535	-	High_confidence	12	12	40	3.222500	4.784184	chr7	140260344	140260594	LINE|CR1|CR1_Mam	-	chr7	140084854	140260679	STRG.43389.3	-	140084854,140091803,140094055,140096554,140096898,140097544,140098878,140099898,140101950,140111094,140113490,140119112,140120441,140126636,140127441,140129492,140133538,140139104,140260371	140091188,140092077,140094138,140096763,140097047,140097642,140099033,140100023,140102160,140111184,140113582,140119219,140124783,140126823,140127583,140129653,140133656,140139190,140260679	0.775000
transverse_colon_male_adult_54_years	chr16	19393734	19393735	19393734	-	High_confidence	180	180	208	16.757000	5.581796	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19329647	19393724	STRG.74239.3	-	19329647,19393375	19334911,19393724	0.774038
transverse_colon_male_adult_54_years	chr11	57794023	57794070	57794056	+	RAMPAGE_only	7	8	23	1.852938	3.588354	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.956522
transverse_colon_male_adult_54_years	chr4	70676929	70676967	70676966	-	RAMPAGE_only	4	4	11	0.886188	2.913977	chr4	70676811	70677107	SINE|Alu|AluSz	-	chr4	70656319	70666975	JCHAIN|ENST00000510437.5	-	70656319,70657210,70662091,70666426,70666848	70656539,70657291,70662215,70666514,70666975	0.818182
transverse_colon_male_adult_54_years	chr15	29686769	29686774	29686769	+	High_confidence	21	26	40	3.222500	4.714513	chr15	29686408	29686972	LTR|ERV1|LTR12F	+	chr15	29686785	29687742	STRG.69395.1	+	29686785	29687742	0.950000
transverse_colon_male_adult_54_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	10	11	11	0.886188	2.921928	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.909091
transverse_colon_male_adult_54_years	chr19	44914307	44914322	44914321	+	High_confidence	3	3	8	0.644500	2.750000	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914246	44919342	APOC1|ENST00000588750.5	+	44914246,44914671,44914871,44916189,44919172	44914489,44914733,44914949,44916325,44919342	0.875000
transverse_colon_male_adult_54_years	chr22	18079070	18079107	18079072	+	High_confidence	15	19	43	3.464188	4.248842	chr22	18079052	18079186	SINE|Alu|FLAM_C	+	chr22	18078376	18088119	PEX26|ENST00000428061.2	+	18078376,18079873,18083436,18087971	18078606,18080014,18083732,18088119	0.813953
transverse_colon_male_adult_54_years	chr16	81664337	81664344	81664343	+	RAMPAGE_only	10	10	24	1.933500	3.236186	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.916667
transverse_colon_male_adult_54_years	chr16	19430522	19430573	19430572	+	RAMPAGE_only	5	5	27	2.175188	3.589275	chr16	19430590	19430808	DNA|hAT-Charlie|Charlie18a	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	0.925926
transverse_colon_male_adult_54_years	chr20	9333276	9333289	9333276	+	High_confidence	674	697	1180	95.063750	6.556730	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9333286	9480813	STRG.84346.1	+	9333286,9337125,9338007,9338893,9362895,9365460,9371213,9372302,9373046,9380053,9384200,9387462,9389878,9390530,9393587,9395522,9401489,9405913,9407916,9408632,9409056,9411036,9419806,9421296,9423747,9435559,9437001,9443980,9444177,9453346,9457413,9459634,9468570,9472789,9473278,9476716,9478920	9333570,9337206,9338067,9339037,9362975,9365514,9371295,9372403,9373104,9380162,9384411,9387556,9389958,9390615,9393678,9395618,9405348,9406049,9408058,9408717,9409181,9411088,9419909,9421461,9423952,9435648,9437152,9444030,9444243,9453462,9457489,9459810,9468672,9472847,9473365,9476753,9480813	0.967797
transverse_colon_male_adult_54_years	chr16	53047552	53047553	53047552	-	RAMPAGE_only	9	10	10	0.805625	2.725481	chr16	53047342	53047712	LTR|ERVL-MaLR|MLT1B	-	chr16	53042744	53052849	AC007906.2|ENST00000619363.2	-	53042744,53047204,53052760	53044263,53047283,53052849	0.600000
transverse_colon_male_adult_54_years	chr10	94683448	94683515	94683469	+	High_confidence	4	5	23	1.852938	3.497056	chr10	94683305	94683574	SINE|Alu|AluSq2	+	chr10	94683493	94736190	CYP2C18|NM_001128925.1	+	94683493,94687769,94688124,94694916,94720395,94724345,94733296,94735262	94683987,94687932,94688274,94695077,94720537,94724533,94733438,94736190	1.000000
transverse_colon_male_adult_54_years	chr1	33021398	33021449	33021398	-	RAMPAGE_only	4	4	24	1.933500	3.879664	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.833333
transverse_colon_male_adult_54_years	chr2	223950939	223950956	223950954	+	RAMPAGE_only	3	5	18	1.450125	3.969816	chr2	223950874	223951178	LINE|L2|L2a	-	chr2	223957403	223967714	MRPL44|ENST00000258383.3	+	223957403,223959533,223963755,223966862	223957651,223960002,223963934,223967714	0.611111
transverse_colon_male_adult_54_years	chr15	75347033	75347043	75347042	+	High_confidence	18	18	45	3.625313	4.675924	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.600000
transverse_colon_male_adult_54_years	chr9	74847994	74848006	74847994	-	High_confidence	7	8	23	1.852938	3.732159	chr9	74847872	74848586	DNA|TcMar-Tigger|MER44C	-	chr9	74723924	74848175	STRG.49803.4	-	74723924,74728238,74732684,74738406,74739366,74739722,74742560,74744094,74747888,74750663,74752276,74755352,74761695,74761998,74771702,74775882,74782361,74782678,74785873,74788613,74792623,74796740,74800253,74801897,74803793,74808033,74810814,74812298,74816668,74816891,74820303,74821668,74827777,74833997,74840023,74842165,74847889	74724746,74728345,74732736,74738612,74739449,74740009,74742626,74744145,74747914,74750722,74752368,74755473,74761808,74763134,74771835,74776076,74782476,74782853,74786125,74788742,74792770,74796893,74800482,74802175,74803886,74808174,74810868,74812433,74816769,74816964,74820427,74821837,74827949,74834122,74840237,74842343,74848175	0.913043
transverse_colon_male_adult_54_years	chr1	150765957	150765978	150765957	-	High_confidence	4	4	8	0.644500	2.500000	chr1	150765956	150766249	SINE|Alu|AluJr	+	chr1	150730195	150765957	CTSS|NM_004079.4	-	150730195,150747776,150750005,150751780,150755000,150757857,150764637,150765697	150733145,150747879,150750171,150752008,150755150,150757980,150764764,150765957	1.000000
transverse_colon_male_adult_54_years	chr11	114650524	114650585	114650524	+	High_confidence	16	19	62	4.994875	4.883801	chr11	114650014	114651054	LINE|L1|L1MCc	+	chr11	114650394	114723111	STRG.58965.1	+	114650394,114651241,114679656,114698044,114703990,114705780,114706394	114651045,114651425,114679762,114698778,114704052,114705996,114723111	1.000000
transverse_colon_male_adult_54_years	chr19	15829013	15829014	15829013	+	High_confidence	5	5	8	0.644500	2.521641	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829050	15835417	UCA1|ENST00000644845.1	+	15829050,15831254,15834635,15835217	15829338,15831356,15835114,15835417	0.750000
transverse_colon_male_adult_54_years	chr8	116648828	116648848	116648828	-	RAMPAGE_only	4	4	11	0.886188	2.721928	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.818182
transverse_colon_male_adult_54_years	chr2	233012622	233012638	233012637	+	High_confidence	8	10	28	2.255750	3.796218	chr2	233012609	233012781	DNA|hAT-Tip100|MER45A	+	chr2	233012613	233015885	AC106876.1|ENST00000409905.1	+	233012613,233013139,233015706	233012969,233013247,233015885	0.750000
transverse_colon_male_adult_54_years	chr1	195721832	195721833	195721832	+	High_confidence	117	124	156	12.567750	5.590296	chr1	195721489	195721970	LTR|ERVK|LTR14C	-	chr1	195721742	195758046	STRG.6523.1	+	195721742,195738115,195749004,195757775	195722034,195738437,195749147,195758046	0.750000
transverse_colon_male_adult_54_years	chr1	184568398	184568409	184568398	+	High_confidence	8	8	19	1.530688	3.115834	chr1	184568204	184568449	LINE|L1|L1MB3	-	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	1.000000
transverse_colon_male_adult_54_years	chr7	154928503	154928504	154928503	+	High_confidence	5	6	8	0.644500	2.521641	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.875000
transverse_colon_male_adult_54_years	chr9	20658568	20658608	20658568	+	High_confidence	6	6	22	1.772375	3.139354	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.772727
transverse_colon_male_adult_54_years	chr12	4720336	4720354	4720336	+	High_confidence	12	17	29	2.336313	4.185230	chr12	4720007	4720593	LTR|ERVK|LTR14C	-	chr12	4720340	4772726	GALNT8|ENST00000252318.6	+	4720340,4726531,4739162,4744516,4745428,4746143,4760957,4763252,4763951,4765378,4772444	4720888,4726829,4739329,4744700,4745626,4746258,4761143,4763390,4764047,4765546,4772726	1.000000
transverse_colon_male_adult_54_years	chr3	136625270	136625271	136625270	-	High_confidence	816	829	898	72.345125	6.672771	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136337156	136625306	STRG.20814.4	-	136337156,136338369,136340490,136341440,136343831,136349157,136357719,136359147,136363365,136366942,136369107,136377659,136398748,136417884,136421092,136422409,136422767,136422951,136433555,136443286,136452032,136464880,136472412,136473538,136477288,136500222,136502627,136521212,136542118,136568764,136604308,136623145,136625204	136338277,136338450,136340605,136341551,136344006,136349363,136357848,136359296,136363467,136367082,136369282,136377752,136398829,136417972,136421163,136422613,136422857,136423044,136433659,136443404,136452147,136464988,136472492,136473637,136477412,136500296,136502779,136521417,136542195,136568861,136604473,136623248,136625306	0.953229
transverse_colon_male_adult_54_years	chr4	79197488	79197522	79197512	+	High_confidence	3	3	11	0.886188	2.913977	chr4	79197378	79197549	LTR|ERVL-MaLR|MLT1H	+	chr4	79197540	79308655	LINC01088|ENST00000512130.5	+	79197540,79306690,79308272	79197644,79306728,79308655	0.727273
transverse_colon_male_adult_54_years	chr1	148900909	148900917	148900909	+	High_confidence	11	13	29	2.336313	4.110577	chr1	148900820	148900942	SINE|MIR|MIR3	-	chr1	148900907	148989385	STRG.4792.6	+	148900907,148929196,148931799,148932112,148937746,148960653,148961836,148962195,148962427,148965483,148966542,148966838,148967725,148968835,148972179,148972510,148974513,148989183	148900985,148929273,148931923,148932288,148937864,148960785,148961956,148962288,148962640,148965642,148966656,148966976,148967905,148969030,148972344,148972592,148974605,148989385	0.827586
transverse_colon_male_adult_54_years	chr4	184537538	184537574	184537538	-	High_confidence	3	3	15	1.208438	2.950212	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184536466	184537362	STRG.27779.1	-	184536466	184537362	0.800000
transverse_colon_male_adult_54_years	chr21	41426042	41426090	41426042	+	High_confidence	7	7	20	1.611250	3.421928	chr21	41426026	41426113	DNA|hAT-Charlie|MER5A	-	chr21	41426030	41432147	MX1|ENST00000419044.5	+	41426030,41427205,41427754,41430532,41432049	41426161,41427304,41427866,41430608,41432147	0.950000
transverse_colon_male_adult_54_years	chr12	109053947	109053961	109053956	-	High_confidence	15	20	56	4.511500	4.789149	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.910714
transverse_colon_male_adult_54_years	chr9	113375494	113375495	113375494	-	High_confidence	9	9	14	1.127875	2.777363	chr9	113375358	113375529	SINE|MIR|MIR3	-	chr9	113373415	113376061	HDHD3|NM_031219.3	-	113373415,113375452	113374529,113376061	0.928571
transverse_colon_male_adult_54_years	chr19	5848767	5848772	5848767	-	High_confidence	84	91	168	13.534500	5.438606	chr19	5847625	5849489	LTR|ERV1|HERVH-int	+	chr19	5844539	5848905	FUT3|ENST00000587048.1	-	5844539,5846425,5848833	5844851,5846618,5848905	0.761905
transverse_colon_male_adult_54_years	chr19	571754	571792	571754	-	High_confidence	13	15	40	3.222500	4.650662	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.825000
transverse_colon_male_adult_54_years	chr5	117454948	117454966	117454949	+	High_confidence	33	53	112	9.023000	5.762999	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.705357
transverse_colon_male_adult_54_years	chr20	50130098	50130118	50130098	-	High_confidence	3	3	11	0.886188	2.913977	chr20	50130055	50130545	LTR|ERVL-MaLR|MLT1K	+	chr20	50124043	50130208	STRG.85689.6	-	50124043,50127974,50129545,50130051	50125179,50128187,50129690,50130208	1.000000
transverse_colon_male_adult_54_years	chr10	32446970	32446993	32446992	+	High_confidence	4	4	9	0.725063	2.641604	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	1.000000
transverse_colon_male_adult_54_years	chr1	156252918	156252931	156252925	-	High_confidence	4	4	10	0.805625	3.121928	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.900000
transverse_colon_male_adult_54_years	chr1	90219732	90219775	90219732	+	High_confidence	37	38	100	8.056250	5.807295	chr1	90218768	90219842	LINE|L1|L1PA3	-	chr1	90219743	90295054	STRG.3588.1	+	90219743,90264681,90281560,90282219,90283805	90219858,90264734,90281690,90282347,90295054	0.570000
transverse_colon_male_adult_54_years	chr11	114650732	114650741	114650740	+	High_confidence	9	12	21	1.691813	3.200910	chr11	114650014	114651054	LINE|L1|L1MCc	+	chr11	114650394	114723111	STRG.58965.1	+	114650394,114651241,114679656,114698044,114703990,114705780,114706394	114651045,114651425,114679762,114698778,114704052,114705996,114723111	1.000000
transverse_colon_male_adult_54_years	chr2	70080999	70081016	70081003	-	RAMPAGE_only	3	3	11	0.886188	3.321928	chr2	70080946	70081068	SINE|Alu|AluJo	-	chr2	70031578	70083627	PCBP1-AS1|ENST00000626509.2	-	70031578,70032132,70051202,70059642,70083506	70031931,70032255,70051305,70059680,70083627	0.545455
transverse_colon_male_adult_54_years	chr11	108134305	108134315	108134314	+	High_confidence	6	6	17	1.369563	3.337175	chr11	108134362	108134663	SINE|Alu|AluSc	+	chr11	108133893	108139164	ACAT1|ENST00000528370.1	+	108133893,108134220,108135141,108138897	108133937,108134316,108135242,108139164	0.647059
transverse_colon_male_adult_54_years	chr12	123390760	123390761	123390760	+	High_confidence	6	6	8	0.644500	2.750000	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	1.000000
transverse_colon_male_adult_54_years	chr4	170226587	170226588	170226587	+	High_confidence	278	296	366	29.485875	6.973435	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226597	170283079	STRG.27400.3	+	170226597,170273658,170276581,170282750	170226783,170273964,170276675,170283079	0.816940
transverse_colon_male_adult_54_years	chr11	71745875	71745938	71745914	+	High_confidence	19	19	82	6.606125	5.487014	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.817073
transverse_colon_male_adult_54_years	chr1	179517522	179517551	179517545	+	High_confidence	56	59	147	11.842688	6.400384	chr1	179516075	179517979	LINE|L1|L1PB1	-	chr1	179517450	179555441	STRG.6150.1	+	179517450,179525333,179528326,179533794,179534729,179554511	179517681,179525447,179528431,179533877,179534962,179555441	0.843537
transverse_colon_male_adult_54_years	chr19	10825211	10825216	10825211	+	RAMPAGE_only	4	4	13	1.047313	2.522055	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	0.923077
transverse_colon_male_adult_54_years	chr8	80485592	80485619	80485592	+	High_confidence	14	14	38	3.061375	4.303784	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.763158
transverse_colon_male_adult_54_years	chr17	59620042	59620049	59620042	+	High_confidence	5	6	12	0.966750	3.027169	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.666667
transverse_colon_male_adult_54_years	chr9	69477098	69477105	69477104	+	RAMPAGE_only	16	17	36	2.900250	3.954443	chr9	69477107	69483129	LINE|L1|L1PA2	+	chr9	69472465	69494513	AL353693.1|ENST00000429567.2	+	69472465,69474262,69494286	69472590,69474352,69494513	0.833333
transverse_colon_male_adult_54_years	chr12	100410563	100410618	100410563	+	High_confidence	79	86	249	20.060063	5.908941	chr12	100410510	100410676	SINE|Alu|AluSx1	+	chr12	100410620	100420089	SLC17A8|ENST00000552697.1	+	100410620,100412769,100418028,100419814	100410699,100412880,100418156,100420089	0.775100
transverse_colon_male_adult_54_years	chr10	122018643	122018674	122018672	+	High_confidence	7	12	20	1.611250	3.681881	chr10	122018391	122018791	LINE|L1|L1MB5	-	chr10	122019311	122226421	STRG.55024.2	+	122019311,122021936,122050437,122082646,122088477,122132608,122143571,122195039,122210396,122215390,122216626,122224725,122226365	122019881,122022014,122050550,122087959,122088591,122132734,122143706,122195176,122211708,122215451,122216828,122224787,122226421	0.700000
transverse_colon_male_adult_54_years	chr5	70401457	70401543	70401467	+	RAMPAGE_only	13	14	92	7.411750	4.885029	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.967391
transverse_colon_male_adult_54_years	chr22	24301784	24301797	24301784	+	RAMPAGE_only	30	34	58	4.672625	5.042736	chr22	24301766	24302060	SINE|Alu|AluY	+	chr22	24304395	24321688	SPECC1L|ENST00000440893.1	+	24304395,24313312,24321287	24304452,24313466,24321688	0.500000
transverse_colon_male_adult_54_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	43	43	46	3.705875	4.385453	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.608696
transverse_colon_male_adult_54_years	chr4	93894005	93894014	93894013	-	High_confidence	33	40	72	5.800500	5.199449	chr4	93893568	93894080	LTR|ERVL-MaLR|MLT1H1	-	chr4	93884011	93894027	STRG.25024.2	-	93884011,93893685	93892505,93894027	0.972222
transverse_colon_male_adult_54_years	chr12	4720061	4720117	4720068	-	High_confidence	4	5	27	2.175188	3.763342	chr12	4720007	4720593	LTR|ERVK|LTR14C	-	chr12	4700416	4720102	LOC101929549|NR_110112.1	-	4700416,4703312,4704177,4719864	4701179,4703440,4704297,4720102	0.888889
transverse_colon_male_adult_54_years	chr16	29963560	29963561	29963560	+	High_confidence	10	11	15	1.208438	2.999581	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963399	29968594	TMEM219|ENST00000569445.2	+	29963399,29968024	29963589,29968594	0.666667
transverse_colon_male_adult_54_years	chr1	89272843	89272891	89272867	-	High_confidence	10	10	58	4.672625	4.874483	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.965517
transverse_colon_male_adult_54_years	chr14	50533190	50533288	50533254	+	High_confidence	11	11	47	3.786438	4.925523	chr14	50533262	50533367	SINE|MIR|MIRc	+	chr14	50533081	50633068	ATL1|NM_001127713.1	+	50533081,50560126,50587830,50590940,50591534,50593845,50595575,50613258,50614372,50620598,50621842,50623176,50628030,50632228	50533367,50560299,50588078,50591075,50591639,50593896,50595632,50613351,50614511,50620726,50621899,50623248,50628462,50633068	0.765957
transverse_colon_male_adult_54_years	chr22	35085926	35085956	35085926	+	RAMPAGE_only	4	4	9	0.725063	2.725481	chr22	35085973	35086090	SINE|MIR|MIR3	+	chr22	35066135	35087387	ISX|NM_001303508.1	+	35066135,35066751,35082517,35084382,35085453	35066462,35067316,35082669,35084499,35087387	1.000000
transverse_colon_male_adult_54_years	chr20	37345083	37345131	37345130	+	High_confidence	13	13	56	4.511500	4.912734	chr20	37345047	37345146	SINE|MIR|MIR3	+	chr20	37344711	37405432	STRG.85365.1	+	37344711,37345048,37347117,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37345229,37347236,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.803571
transverse_colon_male_adult_54_years	chr12	643627	643648	643635	-	High_confidence	15	15	35	2.819688	4.017918	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.971429
transverse_colon_male_adult_54_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	24	24	24	1.933500	4.168296	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
transverse_colon_male_adult_54_years	chr17	16464677	16464696	16464695	-	RAMPAGE_only	5	6	12	0.966750	2.855389	chr17	16464610	16464686	DNA|hAT-Charlie|Charlie24	-	chr17	16441576	16448294	LRRC75A|ENST00000409887.3	-	16441576,16446879,16447844	16444131,16447031,16448294	0.666667
transverse_colon_male_adult_54_years	chr6	36505070	36505091	36505090	-	RAMPAGE_only	3	3	7	0.563938	2.584963	chr6	36505057	36505226	DNA|hAT-Charlie|MER5B	+	chr6	36493891	36547470	STRG.34371.5	-	36493891,36497779,36498362,36507499,36515337,36524340,36525590,36540071,36547189	36496805,36497875,36506644,36507602,36521817,36524463,36525642,36545285,36547470	0.857143
transverse_colon_male_adult_54_years	chr21	39642381	39642396	39642381	+	High_confidence	70	71	160	12.890000	6.114019	chr21	39642371	39642477	LINE|L2|L2b	-	chr21	39641992	39673220	STRG.87100.1	+	39641992,39646391,39659752,39660559	39642476,39646622,39659912,39673220	0.868750
transverse_colon_male_adult_54_years	chr2	47369221	47369235	47369234	+	High_confidence	4	4	11	0.886188	2.845351	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369147	47387028	EPCAM|NM_002354.2	+	47369147,47373462,47373807,47375233,47377013,47378952,47379768,47385165,47386571	47369581,47373570,47374048,47375299,47377077,47379054,47379969,47385210,47387028	1.000000
transverse_colon_male_adult_54_years	chr15	69314407	69314484	69314407	+	High_confidence	11	13	94	7.572875	5.625419	chr15	69314411	69314496	SINE|MIR|MIR3	+	chr15	69314402	69407641	STRG.71661.1	+	69314402,69337340,69350854,69359316,69359965,69379882,69384676,69389653,69397467,69399973,69403580	69314794,69337501,69351014,69359422,69360131,69380010,69384882,69389780,69397564,69400115,69407641	0.904255
transverse_colon_male_adult_54_years	chr3	183318411	183318412	183318411	-	High_confidence	13	13	14	1.127875	3.085055	chr3	183318372	183318522	SINE|MIR|MIR3	+	chr3	183310927	183318402	STRG.21988.1	-	183310927,183311647,183318067,183318328	183311029,183311772,183318217,183318402	0.785714
transverse_colon_male_adult_54_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	7	8	14	1.127875	3.392747	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.785714
transverse_colon_male_adult_54_years	chr3	33838256	33838257	33838256	+	RAMPAGE_only	14	14	17	1.369563	3.155639	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.647059
transverse_colon_male_adult_54_years	chr5	75336517	75336519	75336517	+	High_confidence	7	10	13	1.047313	2.931209	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	0.769231
transverse_colon_male_adult_54_years	chr22	35311057	35311077	35311057	+	High_confidence	14	16	46	3.705875	3.958210	chr22	35310706	35311148	LINE|L2|L2c	-	chr22	35311061	35323819	TOM1|ENST00000443206.2	+	35311061,35317876,35321958,35323027,35323495,35323767	35311127,35317961,35322037,35323177,35323630,35323819	0.826087
transverse_colon_male_adult_54_years	chr10	87127817	87127841	87127822	+	RAMPAGE_only	21	21	53	4.269813	5.185923	chr10	87127730	87127850	SINE|MIR|MIR	-	chr10	87095195	87191463	SHLD2|ENST00000298784.5	+	87095195,87096933,87151349,87158047,87170477,87170839,87180074,87187084,87190483	87095248,87096989,87152879,87158155,87170672,87170974,87180303,87187200,87191463	0.867925
transverse_colon_male_adult_54_years	chr9	22113544	22113547	22113544	+	High_confidence	314	397	856	68.961500	7.160722	chr9	22113591	22113733	SINE|MIR|MIRc	+	chr9	22113677	22120713	STRG.48490.1	+	22113677,22118643,22120199,22120503	22113799,22118767,22120410,22120713	0.808411
transverse_colon_male_adult_54_years	chr8	18919258	18919280	18919258	-	RAMPAGE_only	5	5	17	1.369563	2.748940	chr8	18918926	18919366	LINE|CR1|L3	-	chr8	18530710	18887034	PSD3|ENST00000523619.5	-	18530710,18556208,18572527,18575127,18600363,18632612,18655641,18765448,18799294,18801269,18804521,18804703,18867673,18871625,18886935	18535958,18556352,18572672,18575285,18600434,18632806,18655685,18765538,18799353,18801382,18804602,18804898,18868069,18872733,18887034	0.941176
transverse_colon_male_adult_54_years	chr12	20423679	20423719	20423718	+	RAMPAGE_only	7	7	21	1.691813	4.021928	chr12	20423744	20423796	LTR|Gypsy|LTR81	+	chr12	20386236	20551073	STRG.60511.4	+	20386236,20392534	20392510,20551073	0.714286
transverse_colon_male_adult_54_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	16	16	17	1.369563	3.500000	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.705882
transverse_colon_male_adult_54_years	chr13	22040971	22040972	22040971	+	High_confidence	14	14	16	1.289000	3.750000	chr13	22040750	22041268	LTR|ERV1|LTR1A2	+	chr13	22040974	22276524	LINC00540|ENST00000631321.1	+	22040974,22274522	22041384,22276524	0.625000
transverse_colon_male_adult_54_years	chr1	67138993	67139018	67139010	+	High_confidence	10	10	30	2.416875	4.272906	chr1	67139035	67139205	LTR|ERVL-MaLR|MLT1K	+	chr1	67138906	67259167	IL23R|ENST00000637002.1	+	67138906,67168091,67169341,67182835,67200741,67206909,67219573,67236712,67240178,67255836,67258477	67139161,67168190,67169638,67182959,67200897,67207055,67219730,67236802,67240281,67255927,67259167	0.700000
transverse_colon_male_adult_54_years	chr10	5023239	5023323	5023239	-	High_confidence	30	30	160	12.890000	6.476402	chr10	5023105	5023345	LTR|ERVL-MaLR|MLT1F2	-	chr10	4987399	5023312	STRG.51935.1	-	4987399,4991830,4995318,4995755,4998624,4999199,5000549,5001513,5003751,5007406,5010343,5023058	4990038,4991913,4995484,4995865,4998747,4999277,5000666,5001681,5004014,5007506,5017944,5023312	0.687500
transverse_colon_male_adult_54_years	chr15	40650125	40650146	40650145	+	High_confidence	5	5	14	1.127875	3.093069	chr15	40650091	40650181	LINE|L2|L2c	+	chr15	40650126	40654977	KNL1|ENST00000532347.1	+	40650126,40650543,40651470,40652004,40654908	40650378,40650583,40651572,40652105,40654977	0.857143
transverse_colon_male_adult_54_years	chr1	90219400	90219425	90219418	+	High_confidence	3	3	13	1.047313	3.022055	chr1	90218768	90219842	LINE|L1|L1PA3	-	chr1	90219743	90295054	STRG.3588.1	+	90219743,90264681,90281560,90282219,90283805	90219858,90264734,90281690,90282347,90295054	0.538462
transverse_colon_male_adult_54_years	chr7	11194708	11194709	11194708	+	RAMPAGE_only	7	7	11	0.886188	3.277613	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.545455
transverse_colon_male_adult_54_years	chr8	75324378	75324413	75324380	-	High_confidence	13	16	45	3.625313	4.276941	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.933333
transverse_colon_male_adult_54_years	chr7	87040212	87040223	87040222	-	High_confidence	10	10	29	2.336313	4.004364	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86942080	87040312	STRG.41562.4	-	86942080,86944898,86947726,86964903,87039755	86942104,86945046,86947922,86965024,87040312	0.965517
transverse_colon_male_adult_54_years	chr11	1092829	1092878	1092854	+	RAMPAGE_only	15	15	45	3.625313	4.898153	chr11	1092816	1092887	DNA|hAT-Ac|OldhAT1	-	chr11	1074874	1110511	MUC2|ENST00000361558.7	+	1074874,1075650,1077453,1077951,1078122,1078311,1081661,1082284,1082480,1082877,1083076,1083424,1083652,1084290,1084591,1085067,1085553,1085744,1086245,1086734,1087754,1087946,1088257,1089508,1089941,1090763,1092398,1092843,1093533,1094141,1100756,1101222,1101755,1102416,1103273,1103780,1104732,1105302,1105510,1105855,1107085,1107649,1108003,1108172,1108547,1109280,1109646,1109900,1110135	1074977,1075921,1077568,1078042,1078232,1078522,1081787,1082402,1082619,1082988,1083146,1083562,1083817,1084385,1084718,1085323,1085606,1085845,1086397,1086873,1087865,1088126,1088497,1089665,1090073,1090911,1092442,1093047,1093551,1100025,1100954,1101446,1101930,1102664,1103457,1104009,1104911,1105372,1105611,1105887,1107263,1107754,1108044,1108295,1108646,1109409,1109686,1110027,1110511	0.888889
transverse_colon_male_adult_54_years	chr8	75324289	75324332	75324331	-	High_confidence	64	69	176	14.179000	5.556208	chr8	75324221	75330225	LINE|L1|L1PA5	+	chr8	75223897	75324316	CASC9|ENST00000523313.1	-	75223897,75324220	75224358,75324316	0.778409
transverse_colon_male_adult_54_years	chr2	198491121	198491122	198491121	+	RAMPAGE_only	8	8	12	0.966750	2.663533	chr2	198491086	198491177	LINE|L2|L2a	-	chr2	198571368	198572898	STRG.14802.1	+	198571368,198571855	198571477,198572898	0.500000
transverse_colon_male_adult_54_years	chr3	69237174	69237186	69237185	-	RAMPAGE_only	5	6	13	1.047313	2.603158	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.692308
transverse_colon_male_adult_54_years	chrX	44225792	44225827	44225802	-	High_confidence	33	34	112	9.023000	4.330579	chrX	44225702	44225811	SINE|MIR|MIR3	-	chrX	44147881	44225756	EFHC2|ENST00000343571.3	-	44147881,44163921,44176291,44178366,44225684	44148896,44164027,44176384,44178564,44225756	0.991071
transverse_colon_male_adult_54_years	chr11	134467260	134467293	134467264	+	High_confidence	94	94	207	16.676438	5.771629	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134467265	134487915	STRG.59479.3	+	134467265,134467864,134469486,134480844,134482626	134467615,134467987,134474827,134480911,134487915	0.942029
transverse_colon_male_adult_54_years	chr1	6208681	6208682	6208681	-	High_confidence	44	44	44	3.544750	3.762363	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.977273
transverse_colon_male_adult_54_years	chr2	3536862	3536899	3536862	-	High_confidence	3	3	11	0.886188	3.321928	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.636364
transverse_colon_male_adult_54_years	chr1	220090399	220090433	220090412	-	High_confidence	23	23	99	7.975688	5.179583	chr1	220090323	220090490	SINE|Alu|AluJr	-	chr1	220057483	220090462	BPNT1|ENST00000469520.6	-	220057483,220059685,220062756,220067301,220069383,220072849,220073966,220079726,220089685,220090286	220058992,220059791,220062954,220067393,220069432,220072957,220074071,220079854,220089951,220090462	0.989899
transverse_colon_male_adult_54_years	chr15	71747851	71747852	71747851	+	RAMPAGE_only	9	9	10	0.805625	3.169925	chr15	71747409	71747892	LTR|ERV1|LTR44	-	chr15	71660454	71767651	THSD4|ENST00000567838.1	+	71660454,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71766698	71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71767651	0.600000
transverse_colon_male_adult_54_years	chr12	9065173	9065181	9065173	+	High_confidence	4	4	9	0.725063	2.750000	chr12	9065173	9066669	LTR|ERV1|MER52D	+	chr12	9065176	9068060	A2M-AS1|ENST00000499762.2	+	9065176,9065825,9066155	9065228,9066060,9068060	0.666667
transverse_colon_male_adult_54_years	chr5	140700445	140700452	140700445	+	High_confidence	305	381	663	53.412938	5.009953	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.987934
transverse_colon_male_adult_54_years	chr17	50476632	50476660	50476652	-	High_confidence	25	28	62	4.994875	5.117907	chr17	50476465	50476629	SINE|MIR|MIRb	-	chr17	50464841	50476650	STRG.78372.1	-	50464841,50465293,50465706,50468039,50476386	50465049,50465439,50465870,50471085,50476650	0.838710
transverse_colon_male_adult_54_years	chr3	108295736	108295764	108295736	+	High_confidence	40	41	80	6.445000	5.603848	chr3	108295771	108295812	DNA|hAT-Ac|OldhAT1	+	chr3	108296489	108378285	HHLA2|NM_001282558.1	+	108296489,108310654,108328269,108351787,108353426,108355114,108357843,108362341,108376492,108377257	108296599,108310741,108328347,108351877,108353780,108355381,108358161,108362446,108376557,108378285	0.650000
transverse_colon_male_adult_54_years	chr15	59556000	59556037	59556036	+	High_confidence	16	17	52	4.189250	4.931663	chr15	59555944	59556107	SINE|Alu|AluJr	+	chr15	59555979	59642631	STRG.71083.1	+	59555979,59609734,59611901,59616691,59618178,59625791,59640089,59640867	59556173,59609868,59611981,59616881,59621280,59625918,59640843,59642631	0.538462
transverse_colon_male_adult_54_years	chr1	1721677	1721708	1721707	-	High_confidence	8	8	18	1.450125	3.219528	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1635586	1721655	STRG.158.12	-	1635586,1635936,1636332,1636681,1636896,1637080,1637407,1637761,1638499,1640276,1641047,1641661,1708864,1709037,1709517,1712263,1716345,1719327,1721595	1635856,1636126,1636481,1636798,1637004,1637202,1637513,1637883,1638590,1640452,1641113,1641723,1708952,1709133,1709640,1712400,1716478,1719455,1721655	0.944444
transverse_colon_male_adult_54_years	chr12	10363964	10363974	10363964	+	High_confidence	16	18	25	2.014063	3.767894	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.720000
transverse_colon_male_adult_54_years	chr2	73072209	73072224	73072209	-	High_confidence	3	3	9	0.725063	2.500000	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.666667
transverse_colon_male_adult_54_years	chr7	7751662	7751732	7751662	+	RAMPAGE_only	3	3	20	1.611250	3.787144	chr7	7751693	7751981	DNA|hAT-Tip100|Arthur1B	+	chr7	7772360	7879223	UMAD1|ENST00000406829.2	+	7772360,7801669,7877280	7772454,7801743,7879223	0.800000
transverse_colon_male_adult_54_years	chr19	35135742	35135777	35135776	-	High_confidence	5	5	19	1.530688	3.932138	chr19	35135727	35135959	SINE|MIR|MIR	-	chr19	35124512	35135274	LGI4|NM_139284.2	-	35124512,35126269,35126852,35131385,35131788,35131970,35133692,35134032,35134510	35125507,35126775,35127017,35131555,35131860,35132042,35133764,35134104,35135274	0.684211
transverse_colon_male_adult_54_years	chrY	21451857	21451916	21451885	-	High_confidence	25	27	139	11.198188	5.790499	chrY	21451769	21452370	LTR|ERVK|LTR14C	-	chrY	21417190	21451860	STRG.92575.1	-	21417190,21451643	21426263,21451860	0.712230
transverse_colon_male_adult_54_years	chr8	100303406	100303407	100303406	-	High_confidence	12	12	12	0.966750	3.251629	chr8	100303086	100303537	LTR|ERVL-MaLR|MLT1D	-	chr8	100257341	100303230	STRG.46444.3	-	100257341,100259853,100261541,100264033,100264670,100268784,100269868	100259246,100259997,100261755,100264195,100264785,100268947,100303230	0.583333
transverse_colon_male_adult_54_years	chr12	7502517	7502544	7502543	-	High_confidence	6	6	13	1.047313	3.026987	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	1.000000
transverse_colon_male_adult_54_years	chr20	50131139	50131162	50131139	-	High_confidence	19	20	39	3.141938	4.599379	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.974359
transverse_colon_male_adult_54_years	chr9	94640272	94640285	94640284	-	High_confidence	4	7	14	1.127875	2.815072	chr9	94640267	94640989	LINE|L2|L2a	-	chr9	94603132	94640249	FBP1|NM_001127628.1	-	94603132,94605456,94606814,94609920,94617767,94620328,94639140,94640043	94603572,94605576,94606952,94610061,94617860,94620491,94639334,94640249	0.857143
transverse_colon_male_adult_54_years	chr1	222737262	222737290	222737289	+	High_confidence	43	43	92	7.411750	5.338939	chr1	222737157	222738331	LINE|L2|L2a	-	chr1	222737306	222750196	FAM177B|ENST00000360827.6	+	222737306,222737903,222746530,222747014,222749464,222749920	222737322,222738021,222746719,222747081,222749562,222750196	0.793478
transverse_colon_male_adult_54_years	chr11	64329381	64329407	64329381	-	High_confidence	7	9	23	1.852938	3.689704	chr11	64329293	64329370	LINE|L2|L2a	-	chr11	64325049	64329504	AP003774.4|ENST00000447028.1	-	64325049,64327483,64329167	64325331,64327536,64329504	0.913043
transverse_colon_male_adult_54_years	chr11	64242548	64242554	64242548	+	High_confidence	4	6	11	0.886188	2.845351	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.909091
transverse_colon_male_adult_54_years	chr11	72758533	72758553	72758533	-	High_confidence	10	11	24	1.933500	3.425119	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72759309	STARD10|ENST00000537351.5	-	72754728,72755121,72755700,72757766,72758529,72759233	72754782,72755142,72755753,72757884,72758633,72759309	0.583333
transverse_colon_male_adult_54_years	chr11	77175254	77175260	77175259	+	High_confidence	8	11	20	1.611250	3.384184	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.950000
transverse_colon_male_adult_54_years	chr11	114528225	114528226	114528225	-	RAMPAGE_only	8	8	9	0.725063	2.500000	chr11	114528125	114528623	LINE|L2|L2a	+	chr11	114521715	114530020	STRG.58958.10	-	114521715,114522878	114522503,114530020	0.888889
transverse_colon_male_adult_54_years	chr16	1581096	1581122	1581096	-	RAMPAGE_only	6	7	17	1.369563	3.625000	chr16	1580906	1581055	SINE|MIR|MIR	-	chr16	1510429	1584263	IFT140|ENST00000565298.5	-	1510429,1518215,1519880,1520130,1520601,1523517,1523827,1524783,1525230,1525886,1557934,1561984,1563996,1566160,1568216,1571406,1580758,1583313,1584216	1511150,1518357,1520047,1520343,1520808,1523700,1524695,1524916,1525326,1526796,1558134,1562116,1564162,1566291,1568334,1571534,1580850,1583386,1584263	0.941176
transverse_colon_male_adult_54_years	chr11	67633707	67633784	67633783	-	RAMPAGE_only	13	19	61	4.914313	5.039957	chr11	67633313	67633935	LINE|L2|L2a	+	chr11	67631302	67635023	STRG.57441.3	-	67631302,67632317,67632602,67632947,67634815,67634995	67631894,67632412,67632670,67634360,67634917,67635023	0.934426
transverse_colon_male_adult_54_years	chr15	45441849	45441878	45441877	-	High_confidence	102	103	183	14.742938	5.531220	chr15	45441583	45442168	LTR|ERVL|LTR66	-	chr15	45430651	45441808	AC025580.1|ENST00000559553.1	-	45430651,45433612,45441780	45430814,45434150,45441808	0.923497
transverse_colon_male_adult_54_years	chr7	93219169	93219204	93219169	-	High_confidence	6	6	16	1.289000	3.452820	chr7	93219071	93219143	LINE|CR1|L3	-	chr7	93188585	93219545	HEPACAM2|ENST00000440868.5	-	93188585,93192253,93195827,93197240,93197484,93208579,93215400,93219100	93189270,93192363,93195901,93197278,93197610,93208876,93215685,93219545	1.000000
transverse_colon_male_adult_54_years	chr6	34953297	34953317	34953316	+	RAMPAGE_only	5	5	16	1.289000	3.625000	chr6	34953113	34953356	LINE|L2|L2b	-	chr6	34889313	34989316	ANKS1A|ENST00000650178.1	+	34889313,34967238,34970009,34972580,34981689,34982751,34983112,34983323,34985081,34989223	34889599,34967319,34970166,34972643,34981986,34982827,34983214,34983425,34985278,34989316	1.000000
transverse_colon_male_adult_54_years	chr12	127060711	127060770	127060711	+	High_confidence	3	3	19	1.530688	3.405822	chr12	127060406	127061243	LTR|ERV1|LTR1A2	+	chr12	127060474	127150081	STRG.63708.1	+	127060474,127119553,127145711	127061334,127119678,127150081	1.000000
transverse_colon_male_adult_54_years	chr1	116123782	116123808	116123807	-	High_confidence	4	4	10	0.805625	2.721928	chr1	116123797	116123952	SINE|MIR|MIR3	-	chr1	116122776	116124368	STRG.4288.1	-	116122776	116124368	0.700000
transverse_colon_male_adult_54_years	chr19	3743876	3743885	3743876	+	High_confidence	4	4	12	0.966750	2.855389	chr19	3743650	3743892	LTR|ERVL-MaLR|MLT1J	-	chr19	3743662	3747894	TJP3|ENST00000591493.1	+	3743662,3746010,3746484,3746775,3747793	3744034,3746081,3746695,3746876,3747894	0.666667
transverse_colon_male_adult_54_years	chr11	44564415	44564429	44564426	+	High_confidence	6	6	20	1.611250	3.181366	chr11	44564373	44564477	SINE|MIR|MIRc	+	chr11	44564426	44615295	CD82|ENST00000526958.5	+	44564426,44587474,44594642,44600157,44605057,44605354,44615271	44564502,44587556,44594725,44600230,44605182,44605429,44615295	0.800000
transverse_colon_male_adult_54_years	chr17	39187625	39187657	39187656	-	RAMPAGE_only	18	19	47	3.786438	4.559804	chr17	39187650	39187724	LINE|L1|L1ME3B	+	chr17	39173800	39193883	CACNB1|ENST00000539338.6	-	39173800,39177349,39177983,39183712,39184030,39184324,39184783,39185130,39186495,39186792,39187478,39191473	39175657,39177535,39178079,39183864,39184140,39184383,39184864,39185150,39186572,39186929,39187601,39193883	0.851064
transverse_colon_male_adult_54_years	chr11	8227494	8227520	8227494	-	High_confidence	4	4	15	1.208438	3.506891	chr11	8227406	8227570	SINE|MIR|MIRb	+	chr11	8224495	8227271	STRG.55775.1	-	8224495,8226974	8224721,8227271	0.933333
transverse_colon_male_adult_54_years	chr4	75180913	75180983	75180938	-	High_confidence	14	17	72	5.800500	4.191864	chr4	75180613	75186400	LINE|L1|L1PB1	+	chr4	75176752	75181201	STRG.24365.1	-	75176752,75180410,75180803	75178890,75180465,75181201	0.986111
transverse_colon_male_adult_54_years	chr21	39657249	39657274	39657249	+	High_confidence	4	5	11	0.886188	3.121928	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657319	39662889	B3GALT5|NM_033171.2	+	39657319,39657784,39659752,39660559	39657599,39657893,39659912,39662889	0.818182
transverse_colon_male_adult_54_years	chr17	1115390	1115412	1115390	-	High_confidence	7	8	31	2.497438	3.925993	chr17	1115307	1115433	LINE|L2|L2b	+	chr17	1072732	1115436	ABR|ENST00000570441.5	-	1072732,1073624,1079329,1083519,1091664,1100636,1115275	1072754,1073677,1079390,1083627,1091850,1100735,1115436	0.870968
transverse_colon_male_adult_54_years	chr3	195722489	195722526	195722495	+	RAMPAGE_only	19	22	39	3.141938	4.378992	chr3	195722358	195722503	SINE|MIR|MIRc	-	chr3	195720994	195733504	MUC20|ENST00000320736.10	+	195720994,195724679,195725672,195729647,195733149	195721083,195725159,195726572,195729739,195733504	0.615385
transverse_colon_male_adult_54_years	chr4	168317998	168318004	168317998	-	High_confidence	9	12	21	1.691813	3.784942	chr4	168317795	168318076	LTR|ERVL-MaLR|MLT1E1A	+	chr4	168216292	168318804	STRG.27266.6	-	168216292,168220654,168221729,168224242,168225528,168236251,168237285,168237690,168246417,168248187,168250953,168252508,168255710,168260864,168261999,168262682,168267581,168267840,168268853,168272042,168273278,168273933,168275344,168276014,168280334,168283445,168284819,168285392,168287047,168288173,168291747,168293786,168302299,168306378,168308005,168310997,168311255,168318006	168217032,168220717,168221881,168224385,168225676,168236373,168237427,168237795,168246618,168248292,168251106,168252656,168255869,168260989,168262128,168262787,168267691,168267983,168268969,168272138,168273398,168274083,168275503,168276181,168280590,168283606,168284935,168285498,168287203,168288315,168291906,168293945,168302416,168306720,168308195,168311067,168311365,168318804	0.952381
transverse_colon_male_adult_54_years	chr11	114651543	114651544	114651543	-	High_confidence	10887	10975	11689	941.695066	5.270235	chr11	114651116	114651893	LTR|ERV1|LTR12	-	chr11	114640307	114651608	STRG.58958.21	-	114640307,114651162	114648469,114651608	0.939944
transverse_colon_male_adult_54_years	chr1	203429182	203429251	203429250	-	High_confidence	316	320	517	41.650813	6.951251	chr1	203429152	203429582	LTR|ERVK|LTR22A	-	chr1	203421375	203429312	STRG.6711.2	-	203421375,203429281	203429223,203429312	0.943907
transverse_colon_male_adult_54_years	chr11	9775640	9775676	9775675	+	High_confidence	12	12	46	3.705875	4.455749	chr11	9775466	9776058	LTR|ERVL|MER21C	+	chr11	9775730	9808379	SBF2-AS1|ENST00000534671.1	+	9775730,9780375,9807847	9775765,9780575,9808379	0.717391
transverse_colon_male_adult_54_years	chr1	47389901	47389951	47389903	-	RAMPAGE_only	6	10	33	2.658563	3.423669	chr1	47389763	47389866	LINE|CR1|L3	-	chr1	47380795	47437317	LINC01389|NR_126355.1	-	47380795,47386247,47408319,47409681,47437289	47381143,47386356,47408475,47409901,47437317	0.969697
transverse_colon_male_adult_54_years	chr14	106845760	106845817	106845800	+	High_confidence	13	13	82	6.606125	5.473048	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106845745	106863781	STRG.69196.1	+	106845745	106863781	0.500000
transverse_colon_male_adult_54_years	chr1	6277776	6277785	6277778	-	RAMPAGE_only	4	7	14	1.127875	3.378783	chr1	6277508	6277865	LINE|L2|L2a	+	chr1	6264271	6358944	ACOT7|NM_181866.2	-	6264271,6281101,6294863,6318491,6327298,6333476,6339432,6349748,6358825	6264695,6281286,6294980,6318578,6327413,6333568,6339589,6349866,6358944	0.928571
transverse_colon_male_adult_54_years	chr14	101731413	101731433	101731432	+	High_confidence	9	10	26	2.094625	3.902175	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.846154
transverse_colon_male_adult_54_years	chr5	168590842	168590871	168590852	+	High_confidence	3	3	10	0.805625	2.725481	chr5	168590593	168591206	DNA|TcMar-Tigger|MER6A	+	chr5	168590303	168667089	STRG.32532.1	+	168590303,168665020,168666355	168590732,168665143,168667089	0.600000
transverse_colon_male_adult_54_years	chr1	84968899	84968936	84968935	-	RAMPAGE_only	27	33	123	9.909188	5.568111	chr1	84968788	84969287	LTR|ERVL|MER21A	+	chr1	84925582	84996940	MCOLN2|ENST00000370608.7	-	84925582,84929557,84931361,84937754,84937980,84939552,84940878,84947032,84952242,84952445,84956430,84958528,84965548,84996795	84926721,84929679,84931568,84937877,84938082,84939702,84940991,84947132,84952339,84952530,84956584,84958702,84965708,84996940	0.674797
transverse_colon_male_adult_54_years	chr1	23417917	23418003	23417917	-	RAMPAGE_only	9	9	70	5.639375	5.155869	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23408559	23419236	TCEA3|ENST00000374602.2	-	23408559,23417248,23417903,23419076	23408726,23417390,23418009,23419236	0.585714
transverse_colon_male_adult_54_years	chr8	79018041	79018047	79018041	+	High_confidence	2	2	7	0.563938	2.807355	chr8	79016872	79018169	LINE|L1|L1MA2	-	chr8	79018049	79018919	STRG.45787.1	+	79018049	79018919	0.714286
transverse_colon_male_adult_54_years	chr2	240606552	240606574	240606552	+	RAMPAGE_only	6	6	12	0.966750	2.550341	chr2	240606494	240607081	LINE|L2|L2b	-	chr2	240605444	240630882	STRG.15917.7	+	240605444,240606416,240616387,240616975,240618887,240629948	240605570,240606612,240616511,240617393,240619031,240630882	0.666667
transverse_colon_male_adult_54_years	chr4	141332616	141332617	141332616	-	High_confidence	22	22	22	1.772375	3.351953	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	1.000000
transverse_colon_male_adult_54_years	chr16	63618045	63618046	63618045	-	High_confidence	24	30	32	2.578000	4.706891	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.500000
transverse_colon_male_adult_54_years	chr20	9333454	9333480	9333479	+	High_confidence	5	5	11	0.886188	2.646439	chr20	9333192	9334446	LINE|L2|L2b	-	chr20	9333286	9480813	STRG.84346.1	+	9333286,9337125,9338007,9338893,9362895,9365460,9371213,9372302,9373046,9380053,9384200,9387462,9389878,9390530,9393587,9395522,9401489,9405913,9407916,9408632,9409056,9411036,9419806,9421296,9423747,9435559,9437001,9443980,9444177,9453346,9457413,9459634,9468570,9472789,9473278,9476716,9478920	9333570,9337206,9338067,9339037,9362975,9365514,9371295,9372403,9373104,9380162,9384411,9387556,9389958,9390615,9393678,9395618,9405348,9406049,9408058,9408717,9409181,9411088,9419909,9421461,9423952,9435648,9437152,9444030,9444243,9453462,9457489,9459810,9468672,9472847,9473365,9476753,9480813	0.909091
transverse_colon_male_adult_54_years	chr9	7240294	7240344	7240343	-	High_confidence	6	6	34	2.739125	4.161988	chr9	7240093	7240394	SINE|Alu|AluJr4	+	chr9	7203144	7240353	STRG.48123.1	-	7203144,7239079,7240087	7205091,7239162,7240353	0.852941
transverse_colon_male_adult_54_years	chr4	118265823	118265846	118265845	-	High_confidence	4	6	16	1.289000	3.375000	chr4	118265367	118266730	LTR|ERV1|LTR12C	+	chr4	118193404	118265975	STRG.25906.3	-	118193404,118251568,118258975,118265783	118204282,118251687,118259075,118265975	0.812500
transverse_colon_male_adult_54_years	chr5	149939821	149939822	149939821	-	RAMPAGE_only	12	12	12	0.966750	3.251629	chr5	149939569	149939803	SINE|MIR|MIRb	-	chr5	149857955	149944793	PDE6A|ENST00000255266.9	-	149857955,149863118,149866169,149867724,149868094,149883428,149884478,149884779,149886264,149895182,149896355,149896710,149898362,149899374,149903647,149907311,149914942,149921634,149931027,149933929,149934565,149944199	149860971,149863266,149866253,149867799,149868158,149883536,149884579,149884867,149886374,149895290,149896502,149896776,149898506,149899524,149903695,149907378,149915007,149921709,149931168,149934019,149934718,149944793	0.833333
transverse_colon_male_adult_54_years	chr2	79790305	79790323	79790318	+	RAMPAGE_only	2	2	8	0.644500	2.807355	chr2	79790101	79790481	LINE|L2|L2b	-	chr2	79856306	80419509	STRG.10961.1	+	79856306,79858012,79869815,79874075,79909593,80393210,80419448	79856447,79858179,79869935,79874342,79909797,80393291,80419509	0.875000
transverse_colon_male_adult_54_years	chr7	107580245	107580267	107580264	+	High_confidence	261	263	1326	106.825875	6.520261	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.941931
transverse_colon_male_adult_54_years	chr16	2770063	2770079	2770063	+	High_confidence	7	9	28	2.255750	3.551596	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2770934	SRRM2|ENST00000574866.1	+	2769894,2770351,2770603,2770857	2770227,2770465,2770717,2770934	0.964286
transverse_colon_male_adult_54_years	chr7	134527596	134527597	134527596	+	High_confidence	800	818	870	70.089375	7.163689	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.983908
transverse_colon_male_adult_54_years	chr11	96411663	96411665	96411663	-	High_confidence	3	5	7	0.563938	2.521641	chr11	96405620	96411665	LINE|L1|L1PA2	-	chr11	96410923	96411658	STRG.58407.1	-	96410923	96411658	0.714286
transverse_colon_male_adult_54_years	chr15	80059915	80059926	80059918	+	High_confidence	94	109	238	19.173875	5.128292	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.966387
transverse_colon_male_adult_54_years	chr17	75742748	75742759	75742748	+	High_confidence	11	13	30	2.416875	3.264084	chr17	75742779	75742995	SINE|MIR|MIRb	+	chr17	75742423	75749045	ITGB4|ENST00000584025.1	+	75742423,75743712,75746263,75748840	75742761,75743861,75746375,75749045	0.900000
transverse_colon_male_adult_54_years	chr7	134527669	134527715	134527714	+	High_confidence	19	21	40	3.222500	4.446439	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527619	134537087	AKR1B10|ENST00000475559.1	+	134527619,134530642,134531907,134533003,134535616,134536708,134537050	134527977,134530810,134532024,134533081,134535663,134536772,134537087	0.825000
transverse_colon_male_adult_54_years	chr13	39025531	39025594	39025593	-	High_confidence	10	10	69	5.558813	4.833283	chr13	39025332	39025814	LTR|ERVL-MaLR|MLT1F	+	chr13	39022353	39026472	PROSER1|ENST00000496138.2	-	39022353,39023051,39024472,39026276	39022412,39023130,39024556,39026472	0.710145
transverse_colon_male_adult_54_years	chr17	59651208	59651235	59651208	+	RAMPAGE_only	3	3	13	1.047313	2.777363	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.846154
transverse_colon_male_adult_54_years	chr1	59295900	59295930	59295929	+	High_confidence	3	4	11	0.886188	3.121928	chr1	59295878	59295975	SINE|MIR|MIR3	+	chr1	59295913	59346369	STRG.2424.5	+	59295913,59296370,59321535,59331842,59339957,59346246	59296038,59296460,59321750,59332032,59340069,59346369	0.818182
transverse_colon_male_adult_54_years	chr20	34546843	34546866	34546843	+	High_confidence	126	131	352	28.358000	7.064021	chr20	34546707	34546884	LTR|ERVL-MaLR|MLT1J	-	chr20	34546853	34560343	STRG.85167.3	+	34546853,34549904,34559207,34559346,34559735	34546916,34558908,34559263,34559453,34560343	0.909091
transverse_colon_male_adult_54_years	chr3	63645170	63645171	63645170	+	RAMPAGE_only	6	6	6	0.483375	2.584963	chr3	63645170	63651333	LINE|L1|L1PA4	+	chr3	63652667	63664721	SNTN|ENST00000343837.7	+	63652667,63654761,63659724,63663936	63652797,63654796,63659864,63664721	0.833333
transverse_colon_male_adult_54_years	chr13	39006874	39006875	39006874	-	RAMPAGE_only	7	8	8	0.644500	2.521641	chr13	39000817	39006875	LINE|L1|L1PA2	-	chr13	38965924	38991066	STOML3|ENST00000379631.8	-	38965924,38968399,38970184,38972511,38976539,38976693,38990669	38967049,38968534,38970388,38972594,38976612,38976797,38991066	0.625000
transverse_colon_male_adult_54_years	chr1	197691962	197691969	197691968	-	RAMPAGE_only	9	18	23	1.852938	3.913977	chr1	197690937	197692135	LINE|L1|L1MB1	+	chr1	197605481	197658350	DENND1B|ENST00000496935.1	-	197605481,197611930,197617658,197642710,197645689,197652234,197658299	197607174,197611976,197617759,197642821,197645743,197652315,197658350	0.826087
transverse_colon_male_adult_54_years	chr11	114650811	114650904	114650900	+	High_confidence	61	62	207	16.676438	6.302942	chr11	114650014	114651054	LINE|L1|L1MCc	+	chr11	114650394	114723111	STRG.58965.1	+	114650394,114651241,114679656,114698044,114703990,114705780,114706394	114651045,114651425,114679762,114698778,114704052,114705996,114723111	0.903382
transverse_colon_male_adult_54_years	chr1	192986893	192986934	192986920	-	RAMPAGE_only	2	2	8	0.644500	2.807355	chr1	192986727	192988054	LTR|ERV1|LTR12C	+	chr1	192935795	192957713	AL390957.1|ENST00000647436.1	-	192935795,192957303	192935903,192957713	0.750000
transverse_colon_male_adult_54_years	chr19	5680240	5680261	5680240	-	High_confidence	14	14	64	5.156000	4.802015	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.937500
transverse_colon_male_adult_54_years	chr5	116554807	116554830	116554829	-	High_confidence	4	4	8	0.644500	2.521641	chr5	116554799	116555125	SINE|tRNA|LFSINE_Vert	-	chr5	116496250	116554896	SEMA6A|ENST00000509665.1	-	116496250,116497326,116502209,116504844,116554738	116496313,116497387,116502327,116504982,116554896	0.500000
transverse_colon_male_adult_54_years	chr6	118651542	118651593	118651592	-	High_confidence	14	14	79	6.364438	5.282009	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118469096	118651595	STRG.36673.1	-	118469096,118470536,118479870,118480395,118481778,118483705,118491685,118511297,118523801,118565528,118632452,118651196	118469303,118470644,118479921,118480513,118481933,118483858,118491865,118511415,118523920,118566316,118632611,118651595	0.974684
transverse_colon_male_adult_54_years	chr21	39657326	39657337	39657336	+	High_confidence	105	107	380	30.613750	6.936236	chr21	39657152	39657674	LTR|ERVL|MLT2B3	+	chr21	39657326	39662889	B3GALT5|ENST00000380618.5	+	39657326,39659752,39660559	39657599,39659912,39662889	0.702632
transverse_colon_male_adult_54_years	chr16	85047402	85047419	85047418	+	High_confidence	4	4	23	1.852938	3.880180	chr16	85046674	85047999	LINE|L1|L1MD2	-	chr16	85047401	85069149	STRG.75988.6	+	85047401,85066899	85048332,85069149	0.913043
transverse_colon_male_adult_54_years	chr18	6947458	6947465	6947458	-	High_confidence	8	8	15	1.208438	3.189898	chr18	6947365	6947479	SINE|MIR|MIR3	+	chr18	6941674	6947545	STRG.79646.1	-	6941674,6943179,6947162	6942239,6943402,6947545	0.866667
transverse_colon_male_adult_54_years	chrX	5726324	5726325	5726324	-	High_confidence	14	14	16	1.289000	2.739572	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.750000
transverse_colon_male_adult_54_years	chr7	87039792	87039870	87039869	-	High_confidence	4	4	18	1.450125	3.503258	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86942080	87040312	STRG.41562.4	-	86942080,86944898,86947726,86964903,87039755	86942104,86945046,86947922,86965024,87040312	0.777778
transverse_colon_male_adult_54_years	chr15	45397277	45397284	45397279	-	High_confidence	8	13	21	1.691813	3.184184	chr15	45397083	45398013	LTR|ERVL|MER21C	+	chr15	45376608	45397259	GATM|ENST00000560538.1	-	45376608,45396921	45376819,45397259	0.761905
transverse_colon_male_adult_54_years	chr16	2769792	2769880	2769792	+	High_confidence	9	9	82	6.606125	5.461964	chr16	2769420	2770193	LINE|L2|L2c	+	chr16	2769894	2770934	SRRM2|ENST00000574866.1	+	2769894,2770351,2770603,2770857	2770227,2770465,2770717,2770934	0.926829
transverse_colon_male_adult_54_years	chr3	142596124	142596125	142596124	+	High_confidence	21	23	27	2.175188	4.023465	chr3	142595959	142596147	DNA|hAT-Charlie|MER5A	+	chr3	142596386	142713664	PLS1|NM_001145319.1	+	142596386,142664201,142669389,142670992,142676156,142678031,142684005,142684252,142686283,142689617,142694468,142697952,142703867,142704462,142711500,142711871	142596509,142664307,142669553,142671122,142676289,142678113,142684171,142684395,142686376,142689813,142694547,142698067,142704001,142704586,142711625,142713664	0.629630
transverse_colon_male_adult_54_years	chr11	114678873	114678876	114678873	+	High_confidence	4	4	9	0.725063	2.500000	chr11	114678671	114678874	DNA|hAT-Charlie|MER112	+	chr11	114678477	114706930	NXPE2|NM_182495.5	+	114678477,114679656,114698044,114703990,114705780,114706394	114678601,114679762,114698778,114704052,114705996,114706930	0.888889
transverse_colon_male_adult_54_years	chr16	81181330	81181331	81181330	-	High_confidence	13	13	16	1.289000	3.240224	chr16	81181316	81181500	LTR|ERVL-MaLR|MSTB1	+	chr16	81170288	81181329	PKD1L2|ENST00000531391.5	-	81170288,81170942,81174719,81175604,81177806,81179644,81181150	81170805,81171074,81174914,81175750,81177983,81179786,81181329	0.937500
transverse_colon_male_adult_54_years	chr10	16794073	16794129	16794073	-	High_confidence	23	29	125	10.070313	5.686997	chr10	16793814	16794303	LTR|ERVL|MLT2B2	+	chr10	16593312	16794364	STRG.52265.6	-	16593312,16695022,16752538,16752917,16754870,16764389,16782033,16793955	16593496,16695155,16752653,16753000,16754989,16764510,16782084,16794364	0.936000
transverse_colon_male_adult_54_years	chr12	122064375	122064376	122064375	+	RAMPAGE_only	17	17	17	1.369563	3.572469	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.882353
transverse_colon_male_adult_54_years	chr5	122475806	122475825	122475806	+	High_confidence	66	70	109	8.781313	5.256341	chr5	122475794	122475946	LTR|ERV1|HERVH-int	-	chr5	122475816	122476226	STRG.30978.1	+	122475816	122476226	0.825688
transverse_colon_male_adult_54_years	chr19	5848860	5848907	5848906	-	RAMPAGE_only	4	4	15	1.208438	3.323231	chr19	5847625	5849489	LTR|ERV1|HERVH-int	+	chr19	5842887	5851471	FUT3|ENST00000303225.11	-	5842887,5846425,5851389	5844851,5846966,5851471	0.533333
transverse_colon_male_adult_54_years	chr19	9140390	9140428	9140393	+	High_confidence	25	25	101	8.136813	5.413501	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9161433	STRG.81474.2	+	9140396,9155924,9156611,9157267,9157979,9158825,9160113	9140592,9156041,9156736,9157394,9158075,9158908,9161433	0.782178
transverse_colon_male_adult_54_years	chrX	16712899	16712959	16712958	-	High_confidence	3	3	18	1.450125	3.690117	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16587998	16712979	CTPS2|NM_019857.4	-	16587998,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712979	0.888889
transverse_colon_male_adult_54_years	chr20	37344712	37344725	37344712	+	High_confidence	94	170	328	26.424500	6.849182	chr20	37344715	37344779	SINE|MIR|MIRc	+	chr20	37344711	37405432	STRG.85365.5	+	37344711,37345048,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402748,37403170	37344887,37345229,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37402588,37402880,37405432	0.579268
transverse_colon_male_adult_54_years	chr19	38820189	38820190	38820189	+	High_confidence	8	8	11	0.886188	2.550341	chr19	38820053	38820358	SINE|Alu|AluY	-	chr19	38820165	38823223	AC104534.1|ENST00000594558.1	+	38820165,38822984	38820492,38823223	0.636364
transverse_colon_male_adult_54_years	chr7	130915857	130915922	130915857	+	RAMPAGE_only	10	10	53	4.269813	4.952082	chr7	130915903	130916038	SINE|MIR|MIRc	+	chr7	130853719	130928649	LINC00513|ENST00000447430.1	+	130853719,130862123,130914963,130915899,130927561	130853796,130862202,130915102,130916132,130928649	0.603774
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	152412488	152412529	152412528	-	High_confidence	7	7	16	1.330517	3.625000	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr7	6590248	6590270	6590248	+	High_confidence	3	3	8	0.665259	2.500000	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.500000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr6	52955040	52955041	52955040	+	RAMPAGE_only	10	10	10	0.831573	3.121928	chr6	52955078	52955376	SINE|Alu|AluSz6	+	chr6	52995619	52995950	RF00100|ENST00000365328.1	+	52995619	52995950	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	32403105	32403158	32403115	-	RAMPAGE_only	9	10	37	3.076821	4.208925	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chrX	8122395	8122396	8122395	+	High_confidence	40	40	40	3.326293	4.831687	chrX	8121415	8122700	LTR|ERV1|LTR12C	+	chrX	8122602	8228459	MSTRG.148401.2	+	8122602,8228334	8122723,8228459	0.750000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	70401450	70401479	70401467	+	High_confidence	4	4	26	2.162090	3.923856	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70401439	70427969	MSTRG.109306.17	+	70401439,70420248,70421279,70421734,70422112,70422872,70423298,70427584	70401668,70420337,70421357,70421771,70422199,70422923,70423353,70427969	0.884615
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	86453139	86453232	86453202	-	High_confidence	6	6	28	2.328405	3.636921	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.821429
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr10	93431439	93431495	93431448	-	RAMPAGE_only	7	8	30	2.494720	4.021641	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.866667
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	5680220	5680249	5680248	-	High_confidence	5	5	11	0.914730	2.521928	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.727273
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr10	45594339	45594391	45594390	-	High_confidence	2	2	8	0.665259	2.521641	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45461386	45594491	MARCH8|ENST00000453980.3	-	45461386,45464238,45489366,45533109,45553111,45594234	45461411,45464327,45489417,45533289,45553204,45594491	0.875000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	32598775	32598779	32598778	+	RAMPAGE_only	5	5	10	0.831573	2.503258	chr5	32598085	32598840	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr5	32588536	32601342	SUB1|ENST00000504016.1	+	32588536,32591562,32601004	32588584,32591685,32601342	0.500000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr11	72111494	72111495	72111494	-	High_confidence	10	13	13	1.081045	3.084963	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72109586	72112232	ANAPC15|NM_001278494.1	-	72109586,72110087,72110543,72111156,72111411,72111923	72109928,72110225,72110603,72111286,72111496,72112232	0.923077
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr9	68975842	68975846	68975845	-	RAMPAGE_only	16	16	43	3.575765	4.433635	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68971775	68972642	MSTRG.144847.1	-	68971775	68972642	0.511628
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr8	32927963	32927977	32927976	+	RAMPAGE_only	30	33	56	4.656810	5.158366	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.875000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr7	2242922	2242923	2242922	+	High_confidence	6	6	8	0.665259	2.500000	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr11	111097312	111097344	111097343	-	High_confidence	7	7	46	3.825237	4.269196	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.978261
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	53464815	53464842	53464841	+	RAMPAGE_only	7	7	12	0.997888	2.663533	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479624	MSTRG.29989.38	+	53462513,53465931,53467220,53467804,53468779,53471637,53479405	53462567,53465973,53467293,53467843,53468832,53471807,53479624	0.916667
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	181954512	181954524	181954512	+	High_confidence	4	4	10	0.831573	2.721928	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954530	182117685	PPP1R1C|ENST00000490645.5	+	181954530,181962133,181975218,182061441,182063730,182117206	181954634,181962196,181975264,182061479,182063791,182117685	0.900000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr16	65053813	65053883	65053820	-	RAMPAGE_only	13	14	48	3.991551	4.751629	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.854167
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	113117911	113117971	113117970	+	High_confidence	24	34	124	10.311507	5.148424	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.903226
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr16	2205788	2205855	2205826	+	High_confidence	6	6	43	3.575765	3.990745	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.953488
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	206161460	206161467	206161466	+	High_confidence	10	10	23	1.912618	3.323143	chr2	206161500	206161786	SINE|Alu|AluSg7	+	chr2	206162227	206162928	EEF1B2|ENST00000482103.1	+	206162227,206162728	206162614,206162928	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr14	50756973	50757005	50757004	-	RAMPAGE_only	3	3	9	0.748416	2.500000	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.888889
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	150125445	150125474	150125450	-	RAMPAGE_only	7	7	18	1.496832	3.419382	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.944444
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	245860512	245860718	245860593	-	High_confidence	57	58	447	37.171321	6.816834	chr1	245860451	245860544	DNA|hAT-Tip100|UCON132b	-	chr1	245749350	245860730	MSTRG.12175.6	-	245749350,245764040,245858495,245860442	245749664,245764149,245858701,245860730	0.780761
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	154287469	154287470	154287469	+	High_confidence	6	6	8	0.665259	2.500000	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	19344371	19344399	19344373	-	RAMPAGE_only	6	8	19	1.579989	3.614369	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.947368
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr7	40509494	40509498	40509494	+	RAMPAGE_only	18	18	50	4.157866	4.641541	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.600000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr20	18794063	18794086	18794085	+	High_confidence	22	22	47	3.908394	3.368185	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.978723
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr8	143281631	143281680	143281669	-	High_confidence	19	19	45	3.742079	3.801770	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280165	143281660	MINCR|ENST00000517411.1	-	143280165,143280881,143281481	143280515,143280997,143281660	0.800000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr18	36265378	36265419	36265418	+	RAMPAGE_only	6	6	25	2.078933	4.088779	chr18	36265277	36265421	LTR|ERV1|MER65D	-	chr18	36187518	36272157	MOCOS|ENST00000261326.5	+	36187518,36195256,36198689,36199682,36203112,36205076,36213365,36215515,36220054,36248921,36251158,36256967,36260036,36266748,36268532	36187681,36195346,36198756,36200324,36203189,36205276,36213482,36215977,36220217,36249000,36251283,36257073,36260175,36266853,36272157	0.920000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr17	19386313	19386393	19386333	-	High_confidence	18	19	97	8.066260	5.621626	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.989691
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	209429271	209429407	209429277	+	High_confidence	5	5	43	3.575765	4.582901	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.906977
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr7	107580245	107580267	107580264	+	High_confidence	364	365	1733	144.111630	6.905588	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.932487
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	209429178	209429206	209429181	+	High_confidence	2	2	10	0.831573	2.725481	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.500000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	33838256	33838281	33838256	+	RAMPAGE_only	8	9	19	1.579989	3.794653	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.894737
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	90990577	90990600	90990599	+	RAMPAGE_only	3	3	8	0.665259	2.750000	chr4	90990629	90990739	DNA|hAT-Charlie|MER5A	+	chr4	91085949	91601913	CCSER1|ENST00000649522.1	+	91085949,91283808,91598571	91085994,91283854,91601913	0.875000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	133089637	133089678	133089677	+	RAMPAGE_only	11	12	28	2.328405	3.923252	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr20	13851415	13851426	13851415	-	High_confidence	3	3	6	0.498944	2.584963	chr20	13851304	13851476	LINE|L2|L2a	+	chr20	13849246	13851419	SEL1L2|ENST00000482196.5	-	13849246,13850190,13851323	13849604,13850319,13851419	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr16	27243358	27243371	27243370	-	RAMPAGE_only	5	5	10	0.831573	2.947703	chr16	27243362	27243410	LINE|L2|L2c	+	chr16	27233069	27258151	NSMCE1|ENST00000563900.5	-	27233069,27234187,27235177,27257434,27258083	27233147,27234265,27235299,27257581,27258151	0.700000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	46243246	46243297	46243267	-	RAMPAGE_only	6	6	18	1.496832	3.381580	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.944444
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	34244734	34244781	34244757	-	High_confidence	4	4	16	1.330517	2.811278	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.500000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chrX	147937499	147937575	147937559	+	RAMPAGE_only	4	4	20	1.663146	3.446439	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147943244	147948534	FMR1|ENST00000463120.2	+	147943244,147944868,147945533,147948412	147943326,147945051,147945616,147948534	0.850000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr10	117492027	117492032	117492031	-	High_confidence	3	3	8	0.665259	2.500000	chr10	117491808	117492291	LTR|ERVL|LTR33	-	chr10	117473236	117492037	MSTRG.18653.3	-	117473236,117485952,117492020	117473422,117490906,117492037	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	42809307	42809308	42809307	+	High_confidence	11	16	16	1.330517	3.773557	chr3	42809252	42809581	LTR|ERV1|MER39	-	chr3	42809461	42887974	ACKR2|ENST00000498111.5	+	42809461,42819630,42864465,42887537	42809532,42819711,42864859,42887974	0.500000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr6	127330928	127330929	127330928	-	High_confidence	4	4	7	0.582101	2.521641	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.857143
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	166850124	166850125	166850124	+	RAMPAGE_only	10	10	14	1.164202	3.238901	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.928571
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr6	2881285	2881286	2881285	-	High_confidence	5	7	7	0.582101	2.521641	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	172954201	172954224	172954201	+	RAMPAGE_only	6	6	18	1.496832	3.219528	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172958728	172969716	RPL26L1|ENST00000519974.5	+	172958728,172959864,172968458,172969412	172958801,172960041,172968599,172969716	0.888889
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr6	43013392	43013393	43013392	-	High_confidence	9	9	12	0.997888	3.418296	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr17	2975647	2975661	2975658	+	RAMPAGE_only	2	2	7	0.582101	2.807355	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2796481	3034771	RAP1GAP2|ENST00000542807.1	+	2796481,2800514,2905283,2957758,2962669,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391,3034751	2796571,2800550,2905368,2957794,2962714,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3034212,3034771	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr11	71745875	71745915	71745914	+	High_confidence	6	6	13	1.081045	2.751629	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.923077
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr15	80059915	80059919	80059918	+	High_confidence	80	86	163	13.554643	4.809615	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.981595
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr6	2990742	2990755	2990748	-	RAMPAGE_only	16	18	41	3.409450	3.643780	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.951220
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	84085811	84085812	84085811	-	High_confidence	12	15	18	1.496832	3.175123	chr5	84085110	84086606	LINE|L1|L1P3	-	chr5	84060294	84085792	MSTRG.110336.4	-	84060294,84064699,84066450,84085158	84060484,84064844,84066606,84085792	0.944444
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	12927723	12927756	12927733	+	High_confidence	10	10	31	2.577877	4.319903	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.645161
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	53874819	53874820	53874819	+	RAMPAGE_only	7	8	11	0.914730	2.845351	chr19	53874763	53874953	SINE|Alu|AluSx	-	chr19	53869405	53876435	MYADM|ENST00000391769.2	+	53869405,53869753,53873527	53869598,53869838,53876435	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr13	48492783	48492790	48492783	-	High_confidence	5	6	14	1.164202	3.392747	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.571429
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr16	15798664	15798684	15798664	-	RAMPAGE_only	20	20	49	4.074709	4.624315	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.918367
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr8	11911642	11911661	11911660	-	RAMPAGE_only	19	21	48	3.991551	4.713955	chr8	11907116	11911625	LTR|ERV1|HERVE-int	-	chr8	11848103	11868917	CTSB|ENST00000530296.5	-	11848103,11849045,11850865,11852609,11853328,11868876	11848152,11849164,11850980,11852695,11853479,11868917	0.541667
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr9	129698737	129698746	129698737	+	RAMPAGE_only	14	16	36	2.993663	3.936892	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	0.944444
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr21	44954012	44954033	44954021	+	RAMPAGE_only	8	8	29	2.411562	4.021268	chr21	44953871	44954037	LINE|L1|L1M5	-	chr21	44958245	44976973	FAM207A|ENST00000479127.5	+	44958245,44960099,44967033,44973196,44976679	44958424,44960168,44967181,44973265,44976973	0.965517
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr6	79631242	79631303	79631302	+	High_confidence	15	15	67	5.571540	4.953711	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.955224
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	151687233	151687245	151687233	-	High_confidence	82	83	254	21.121959	5.302595	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687230	MSTRG.114718.1	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687230	0.929134
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	91353190	91353210	91353201	-	RAMPAGE_only	43	43	159	13.222013	5.838362	chr12	91353109	91353281	LTR|ERVL-MaLR|MLT1A0	-	chr12	91143276	91183124	DCN|NM_001920.4	-	91143276,91151653,91153095,91157074,91158295,91164604,91178341,91182654	91146252,91151792,91153189,91157188,91158509,91164717,91178585,91183124	0.723270
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	188153195	188153251	188153250	+	High_confidence	6	8	31	2.577877	4.306891	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.903226
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	46203082	46203083	46203082	-	High_confidence	64	67	70	5.821012	4.106312	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.728571
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr22	50785201	50785243	50785222	+	RAMPAGE_only	7	7	18	1.496832	3.734522	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.944444
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr20	35732358	35732359	35732358	-	High_confidence	49	49	52	4.324180	3.789691	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.942308
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	31997378	31997379	31997378	+	High_confidence	13	13	13	1.081045	2.931209	chr4	31996206	31997789	LTR|ERV1|LTR12C	+	chr4	31997378	32155406	LOC102723828|NR_125936.1	+	31997378,32146052,32155313	31997822,32146267,32155406	0.846154
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr17	49646481	49646514	49646481	-	High_confidence	4	6	29	2.411562	3.272665	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.931034
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr20	25319898	25319923	25319898	-	RAMPAGE_only	2	2	9	0.748416	2.500000	chr20	25319592	25319927	LTR|ERV1|LTR65	+	chr20	25306832	25310472	ABHD12|ENST00000481556.1	-	25306832,25307965,25308456,25309445,25310199	25306915,25308045,25308494,25309575,25310472	0.666667
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	202135838	202135856	202135838	+	High_confidence	18	19	33	2.744191	4.028946	chr2	202135840	202135976	SINE|MIR|MIRc	+	chr2	202135715	202197862	KIAA2012|ENST00000469462.1	+	202135715,202154672,202165283,202184752,202186932,202188151,202190173,202193300,202194189,202196799	202138508,202154810,202165356,202184843,202187098,202188266,202190493,202193503,202194362,202197862	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chrX	10589962	10589963	10589962	-	High_confidence	41	41	45	3.742079	4.791636	chrX	10589852	10590340	LTR|ERV1|LTR2B	-	chrX	10445555	10589909	MID1|ENST00000380780.5	-	10445555,10454869,10459645,10469696,10474622,10482479,10495583,10523091,10566887,10589586	10449716,10455077,10459807,10469840,10474750,10482628,10495691,10523187,10567603,10589909	0.711111
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	193656743	193656757	193656756	+	High_confidence	10	13	19	1.579989	3.836592	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193656727	193697526	MSTRG.94202.30	+	193656727,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193656922,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193697526	0.947368
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	173289464	173289482	173289481	-	High_confidence	7	7	19	1.579989	2.655051	chr4	173289284	173289916	LTR|ERV1|MER61F	-	chr4	173289239	173289474	MSTRG.104955.1	-	173289239	173289474	0.736842
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	120793967	120793968	120793967	+	RAMPAGE_only	21	21	23	1.912618	3.327340	chr2	120793847	120793996	SINE|MIR|MIRc	+	chr2	120792408	120992653	GLI2|ENST00000452319.5	+	120792408,120797290,120927360,120951242,120955244,120968713,120970392,120971940,120974923,120978433,120982715,120984470,120986277,120988207	120792438,120797468,120927466,120951445,120955430,120968915,120970606,120972063,120975109,120978583,120982880,120984743,120986614,120992653	0.913043
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr10	67387433	67387465	67387433	-	RAMPAGE_only	4	4	15	1.247360	3.006239	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.733333
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	4782345	4782422	4782358	+	High_confidence	36	36	118	9.812563	5.748987	chr3	4782402	4782508	DNA|hAT-Charlie|MER117	+	chr3	4782339	4788458	ITPR1|ENST00000481415.2	+	4782339,4783815,4787946	4782741,4783920,4788458	0.923729
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	193656716	193656717	193656716	+	High_confidence	40	40	47	3.908394	4.880525	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193656727	193697526	MSTRG.94202.30	+	193656727,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193656922,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193697526	0.957447
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr13	111337451	111337478	111337477	+	RAMPAGE_only	16	17	69	5.737855	4.903208	chr13	111337198	111337649	LTR|ERVL-MaLR|MLT1F	-	chr13	111320667	111344247	TEX29|ENST00000283547.1	+	111320667,111320856,111328182,111339862,111342755,111344082	111320762,111320948,111328293,111339932,111342931,111344247	0.927536
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr13	106561950	106561951	106561950	-	High_confidence	9	9	9	0.748416	2.725481	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.666667
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr18	7946929	7946946	7946929	+	High_confidence	7	8	13	1.081045	2.719295	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.923077
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	245944123	245944147	245944136	-	RAMPAGE_only	5	5	12	0.997888	2.663533	chr1	245941822	245946127	LINE|L1|L1PA10	+	chr1	245749341	245956102	SMYD3|ENST00000366517.5	-	245749341,245764040,245858495,245863798,245915529,245927930,245929869,245953230,245955832	245749664,245764149,245858670,245863886,245915640,245928033,245929937,245953355,245956102	0.916667
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr7	74052559	74052560	74052559	+	High_confidence	4	4	7	0.582101	2.584963	chr7	74052324	74052610	SINE|Alu|AluJr	+	chr7	74052850	74056347	ELN|ENST00000492210.1	+	74052850,74054715,74056270	74053309,74054769,74056347	0.571429
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	185620092	185620126	185620125	-	RAMPAGE_only	7	11	39	3.243135	3.694656	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.974359
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr15	90413612	90413626	90413625	+	RAMPAGE_only	7	9	12	0.997888	2.913977	chr15	90413281	90413747	LTR|ERV1|MER84	-	chr15	90388276	90440528	IQGAP1|ENST00000560418.1	+	90388276,90426109,90429588,90431220,90433718,90439331,90440501	90388396,90426266,90429666,90431252,90433795,90439399,90440528	0.583333
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	162597847	162597850	162597849	+	High_confidence	4	7	9	0.748416	2.947703	chr1	162597899	162598081	LINE|L1|L1MA7	+	chr1	162597240	162599799	UAP1|ENST00000486089.1	+	162597240,162599270	162597858,162599799	0.888889
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr9	20658316	20658349	20658321	+	High_confidence	4	4	13	1.081045	3.022055	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.615385
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	190918797	190918856	190918823	+	RAMPAGE_only	4	4	13	1.081045	3.546594	chr2	190916709	190919183	DNA|TcMar-Tigger|Tigger1	-	chr2	190900021	190924592	MSTRG.73753.8	+	190900021,190901946,190905003,190910262,190921023,190921144,190923916,190924542	190900693,190902026,190905167,190920248,190921056,190921203,190923983,190924592	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr18	8701804	8701834	8701808	+	RAMPAGE_only	8	10	34	2.827349	4.010134	chr18	8701808	8702158	LTR|ERVL|LTR33A	-	chr18	8705660	8828946	MTCL1|ENST00000306329.15	+	8705660,8718423,8720337,8777832,8783529,8785935,8796231,8798096,8806892,8812978,8818962,8821466,8824698,8828907	8706713,8718648,8720496,8777892,8784843,8786091,8796462,8798291,8807060,8813233,8819259,8821498,8826232,8828946	0.735294
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr17	47056722	47056726	47056725	-	RAMPAGE_only	7	7	12	0.997888	3.095795	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.833333
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr16	19487898	19487901	19487898	-	High_confidence	19	19	41	3.409450	4.277567	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.804878
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	91178974	91178996	91178974	-	High_confidence	7	8	20	1.663146	3.721612	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91143276	91178646	DCN|NM_133506.3	-	91143276,91164604,91178341	91146252,91164717,91178646	0.750000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	95042538	95042540	95042538	-	RAMPAGE_only	12	15	20	1.663146	3.826875	chr1	95042354	95042649	LINE|L1|HAL1	-	chr1	94974406	95072945	ALG14|ENST00000370205.5	-	94974406,95027128,95064865,95072762	94983306,95027260,95065017,95072945	0.700000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	158173024	158173025	158173024	-	High_confidence	33	33	37	3.076821	4.722967	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.891892
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	49539126	49539158	49539145	+	RAMPAGE_only	8	8	47	3.908394	4.307159	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49527617	49543638	RCN3|ENST00000270645.7	+	49527617,49528466,49534192,49537032,49539118,49542552,49543105	49528058,49528714,49534395,49537205,49539179,49542752,49543638	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr20	51526030	51526044	51526030	-	RAMPAGE_only	8	8	16	1.330517	2.822580	chr20	51525529	51526222	LINE|L2|L2b	+	chr20	51386956	51542719	NFATC2|NM_012340.4	-	51386956,51398642,51432066,51435187,51435705,51454547,51473979,51475457,51516783,51523080,51542369	51391451,51398730,51432756,51435314,51435761,51454688,51474152,51475660,51516955,51524110,51542719	0.937500
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr17	42403661	42404016	42403661	-	RAMPAGE_only	20	20	189	15.716733	6.174285	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	0.994709
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr17	47067498	47067518	47067498	-	High_confidence	221	243	770	64.031134	5.735656	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.941558
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr6	77369144	77369194	77369144	-	High_confidence	5	5	22	1.829461	3.481715	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77350678	77369046	MSTRG.120136.1	-	77350678,77368885	77350734,77369046	0.545455
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	149284778	149284779	149284778	+	High_confidence	62	62	67	5.571540	4.651697	chr3	149283837	149285090	LTR|ERV1|LTR12C	+	chr3	149284781	149333653	AC093001.1|ENST00000489011.1	+	149284781,149333503	149285182,149333653	0.611940
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr18	46087012	46087043	46087042	-	High_confidence	4	4	10	0.831573	2.921928	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	43148092	43148095	43148092	+	RAMPAGE_only	7	7	12	0.997888	2.845351	chr12	43147709	43148138	LINE|RTE-X|L4_A_Mam	+	chr12	43155314	43163110	LINC02461|ENST00000553211.1	+	43155314,43159392,43160878,43162967	43155865,43159444,43160968,43163110	0.666667
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	104237921	104237971	104237960	+	High_confidence	4	4	17	1.413674	3.969816	chr5	104237041	104238970	LINE|L2|L2	-	chr5	104238030	104238258	MSTRG.111668.1	+	104238030	104238258	0.588235
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	122074114	122074156	122074155	-	RAMPAGE_only	10	12	34	2.827349	3.776211	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065943	122076083	LOX|ENST00000505593.5	-	122065943,122070052,122070493,122074012,122075403,122076017	122066749,122070168,122070589,122074169,122075541,122076083	0.852941
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	46180865	46180868	46180865	-	High_confidence	5	5	10	0.831573	2.725481	chr19	46180519	46181084	LTR|ERVL|MLT2B3	-	chr19	46163892	46180647	AC006262.2|ENST00000599127.1	-	46163892,46164577,46173933,46179485,46180604	46164216,46164651,46174052,46179537,46180647	0.700000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	147382877	147382900	147382899	+	High_confidence	13	14	51	4.241023	3.769549	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.764706
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	39310256	39310293	39310282	+	RAMPAGE_only	4	4	19	1.579989	3.461320	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.947368
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	97516029	97516041	97516040	-	RAMPAGE_only	5	5	10	0.831573	2.641604	chr2	97516030	97516368	LINE|L2|L2c	-	chr2	97492665	97536028	MSTRG.68299.2	-	97492665,97507035,97507563,97509580,97511137,97513179,97515731,97523325,97532310,97535939	97492855,97507065,97508065,97509733,97512052,97513363,97515945,97523467,97532381,97536028	0.900000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	49086519	49086547	49086520	+	High_confidence	11	17	38	3.159978	4.402991	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.763158
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr6	31587009	31587014	31587013	+	High_confidence	7	7	12	0.997888	2.845351	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.916667
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	227142956	227142979	227142956	-	RAMPAGE_only	7	7	15	1.247360	3.324863	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.666667
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	172954054	172954067	172954066	+	RAMPAGE_only	5	5	9	0.748416	2.503258	chr5	172954067	172954286	DNA|TcMar-Tigger|Tigger13a	+	chr5	172958728	172969716	RPL26L1|ENST00000519974.5	+	172958728,172959864,172968458,172969412	172958801,172960041,172968599,172969716	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	107091596	107091605	107091604	-	RAMPAGE_only	6	6	10	0.831573	2.947703	chr12	107091327	107092108	LINE|L2|L2a	+	chr12	106991363	107093829	CRY1|ENST00000008527.9	-	106991363,106992786,106992964,106997293,106997487,106997914,106999550,106999941,107001279,107001763,107005105,107022083,107092803	106992001,106992890,106993036,106997386,106997690,106998066,106999862,107000082,107001368,107001948,107005248,107022192,107093829	0.700000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	36513674	36513757	36513735	+	High_confidence	9	11	71	5.904170	4.869288	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.887324
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	159428326	159428357	159428356	-	RAMPAGE_only	6	6	18	1.496832	3.734522	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.722222
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr9	84368670	84368699	84368698	-	High_confidence	12	12	44	3.658922	4.948896	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.818182
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	117454948	117454972	117454949	+	High_confidence	6	11	18	1.496832	3.836592	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.666667
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr9	127543805	127543810	127543805	-	RAMPAGE_only	11	11	33	2.744191	4.265320	chr9	127543678	127543822	LINE|L2|L2c	+	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.545455
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	189309856	189309867	189309866	+	High_confidence	6	6	10	0.831573	2.721928	chr3	189309787	189309871	LINE|RTE-BovB|MamRTE1	+	chr3	189309893	189315595	TPRG1|ENST00000481307.1	+	189309893,189310385,189315492	189310177,189310539,189315595	0.500000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr16	70590328	70590335	70590334	+	RAMPAGE_only	3	3	7	0.582101	2.521641	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70660091	MSTRG.51838.2	+	70579908,70646547,70654537,70656601,70656962,70659617,70659996	70580049,70646975,70654671,70656679,70657121,70659753,70660091	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr16	920837	920873	920837	+	High_confidence	9	10	23	1.912618	4.106603	chr16	920344	920841	LINE|L1|L1MEf	+	chr16	921032	934524	LMF1-AS1|NR_110945.1	+	921032,933100,933337	921167,933255,934524	0.869565
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	45616359	45616393	45616392	+	High_confidence	2	2	6	0.498944	2.584963	chr1	45616440	45616559	SINE|Alu|FLAM_C	+	chr1	45617236	45618246	NASP|ENST00000472408.1	+	45617236,45618060	45617591,45618246	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr8	39082971	39083066	39083065	+	RAMPAGE_only	16	16	42	3.492607	4.533785	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.809524
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr10	103605823	103605824	103605823	-	RAMPAGE_only	6	8	8	0.665259	3.000000	chr10	103605815	103605885	LINE|CR1|L3	+	chr10	103594026	103678188	MSTRG.17795.1	-	103594026,103605797,103611580,103612852,103617196,103622469,103627088,103660982,103678080	103603789,103605917,103611630,103613190,103617314,103622553,103627202,103661114,103678188	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr17	20401848	20401858	20401857	+	RAMPAGE_only	8	9	19	1.579989	3.683542	chr17	20401701	20401984	SINE|Alu|AluJb	+	chr17	20321316	20403557	CCDC144CP|ENST00000433419.2	+	20321316,20324182,20335831,20338156,20342357,20348557,20350937,20351256,20357878,20362183,20362921,20365085,20367612,20391474,20392363,20394020,20400520,20401138,20402055	20321660,20324253,20336080,20338230,20342494,20348739,20350971,20351398,20358096,20362367,20363050,20366030,20367750,20391768,20392584,20394230,20400563,20401248,20403557	0.736842
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	74449135	74449136	74449135	+	RAMPAGE_only	6	6	9	0.748416	2.750000	chr4	74449070	74449168	LINE|L1|L1MEf	+	chr4	74445301	74455005	AREG|ENST00000502307.1	+	74445301,74446533,74449046,74450379,74454758	74445406,74446782,74449248,74450532,74455005	0.666667
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	15256206	15256254	15256235	-	RAMPAGE_only	7	7	33	2.744191	4.202820	chr19	15256082	15256220	LINE|L1|L1M5	-	chr19	15235518	15280451	BRD4|ENST00000263377.6	-	15235518,15238742,15239058,15239391,15239658,15239909,15242899,15244230,15244709,15254151,15255296,15256063,15256963,15263419,15264403,15265353,15267415,15268904,15272814,15280263	15238445,15238980,15239264,15239522,15239821,15240022,15243487,15244600,15244762,15254262,15255592,15256263,15257173,15263548,15264766,15265643,15267551,15269042,15273133,15280451	0.969697
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	151684928	151684945	151684928	-	RAMPAGE_only	3	4	8	0.665259	2.500000	chr5	151684675	151684879	SINE|MIR|MIRc	-	chr5	151662487	151686963	MSTRG.114718.3	-	151662487,151664086,151666360,151667466,151669663,151671572,151673128,151674644,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673189,151674674,151676201,151686963	0.750000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	71786176	71786196	71786176	+	RAMPAGE_only	5	5	10	0.831573	2.725481	chr12	71785920	71786200	SINE|Alu|AluY	-	chr12	71754873	71800285	RAB21|ENST00000261263.4	+	71754873,71769799,71770591,71773958,71782030,71782569,71785530	71755288,71769859,71770699,71774022,71782085,71782658,71800285	0.900000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	171400153	171400178	171400153	+	RAMPAGE_only	13	13	59	4.906282	5.143497	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171387850	171407125	NPM1|ENST00000393820.2	+	171387850,171390050,171391304,171391705,171392709,171392913,171400152,171400838,171405301,171406396	171388006,171390130,171391424,171391799,171392816,171392978,171400210,171400925,171405403,171407125	0.593220
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	21876237	21876343	21876237	-	RAMPAGE_only	12	12	100	8.315732	5.546370	chr1	21876092	21876241	LINE|L2|L2c	+	chr1	21822231	21937297	HSPG2|NM_005529.6	-	21822231,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174,21937154	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896310,21937297	0.990000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr6	166957417	166957431	166957417	-	High_confidence	5	5	10	0.831573	2.921928	chr6	166957416	166957859	LINE|L2|L2a	+	chr6	166929539	166957184	RNASET2|ENST00000476238.6	-	166929539,166931043,166934090,166938894,166943018,166946681,166948569,166952487,166956096,166957125	166929791,166931118,166934136,166939008,166943089,166946739,166948625,166952548,166956191,166957184	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	42809429	42809483	42809475	+	High_confidence	5	5	18	1.496832	3.616875	chr3	42809252	42809581	LTR|ERV1|MER39	-	chr3	42809475	42867283	ACKR2|ENST00000422265.5	+	42809475,42819630,42864465	42809532,42819711,42867283	0.500000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	42959077	42959101	42959077	+	High_confidence	6	6	11	0.914730	2.721928	chr1	42959103	42959181	SINE|MIR|MIR3	+	chr1	42959103	42976428	SLC2A1-AS1|ENST00000416689.1	+	42959103,42970248,42973973	42959577,42970394,42976428	0.818182
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	9140390	9140428	9140390	+	High_confidence	3	3	19	1.579989	3.572431	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.789474
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chrX	48683362	48683363	48683362	+	High_confidence	5	8	8	0.665259	2.500000	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr15	85330237	85330261	85330237	-	RAMPAGE_only	13	13	22	1.829461	3.784942	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.863636
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr14	34536093	34536110	34536109	-	High_confidence	3	3	11	0.914730	2.913977	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.727273
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	78600124	78600125	78600124	+	RAMPAGE_only	7	7	9	0.748416	3.000000	chr4	78599930	78600224	LTR|ERV1|MER92A	-	chr4	78601863	78610451	ANXA3|ENST00000503776.2	+	78601863,78610055	78604399,78610451	0.666667
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr6	43013464	43013507	43013506	-	High_confidence	4	4	16	1.330517	3.625000	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr20	34369406	34369421	34369420	+	RAMPAGE_only	3	3	9	0.748416	2.725481	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	140700445	140700452	140700445	+	High_confidence	686	718	1072	89.144644	4.487780	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.979478
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr8	97930961	97931215	97931070	+	High_confidence	12	12	161	13.388328	6.306012	chr8	97931029	97931087	LINE|RTE-BovB|MamRTE1	+	chr8	97931340	98036214	MATN2|ENST00000518154.5	+	97931340,97941776,97978885,97994479,98003660,98007104,98007478,98016539,98017993,98021204,98027415,98030461,98032245,98033098,98033560,98035656	97931522,97941899,97979008,97994602,98003783,98007227,98007601,98016662,98018116,98021327,98027829,98030614,98032317,98033176,98033659,98036214	0.590062
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr10	65570519	65570540	65570519	+	High_confidence	9	12	41	3.409450	4.826875	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.707317
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr21	29077464	29077487	29077486	+	High_confidence	10	10	23	1.912618	3.368042	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.652174
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr11	17282800	17282822	17282821	+	RAMPAGE_only	6	6	11	0.914730	3.277613	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.909091
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	139344537	139344548	139344547	+	High_confidence	26	26	53	4.407338	4.364012	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.924528
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr15	57451499	57451576	57451575	+	RAMPAGE_only	12	12	71	5.904170	4.744837	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57421131	57550700	MSTRG.46648.4	+	57421131,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547351	57421250,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550700	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	24368595	24368634	24368633	-	RAMPAGE_only	4	6	18	1.496832	3.683542	chr12	24368549	24368674	LINE|L2|L2b	+	chr12	23845998	24357430	SOX5|ENST00000536729.2	-	23845998,23895897,24213342,24277215,24357337	23846193,23896024,24213417,24277312,24357430	0.833333
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	6208681	6208682	6208681	-	High_confidence	129	129	129	10.727294	3.940879	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.976744
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr7	154928480	154928504	154928503	+	High_confidence	16	16	25	2.078933	3.593270	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	121950281	121950292	121950291	+	RAMPAGE_only	13	13	29	2.411562	4.208966	chr12	121949929	121950482	LINE|L1|L1MB5	+	chr12	121952694	121959739	WDR66|ENST00000535257.1	+	121952694,121957073,121958271,121958942	121954334,121957268,121958522,121959739	0.965517
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr10	27121390	27121424	27121390	-	RAMPAGE_only	2	2	14	1.164202	3.026987	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	0.928571
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	566729	566730	566729	+	RAMPAGE_only	15	15	20	1.663146	4.021928	chr19	566638	566854	LTR|ERV1|LTR4	-	chr19	571276	583493	BSG|NM_198590.2	+	571276,579499,580378,580645,581314,582305,582513,582749	571579,579656,580461,580782,581591,582330,582582,583493	0.750000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	172958862	172958916	172958915	+	High_confidence	4	4	14	1.164202	2.950212	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	643625	643648	643625	-	High_confidence	4	4	14	1.164202	2.753434	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.928571
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr17	59619888	59619923	59619894	+	High_confidence	271	344	1101	91.556206	5.506175	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.966394
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr21	38235512	38235536	38235512	+	RAMPAGE_only	2	3	7	0.582101	2.521641	chr21	38235271	38235576	SINE|Alu|AluSx	+	chr21	38229914	38301826	KCNJ15|NM_001276439.1	+	38229914,38257045,38296925,38299243	38230023,38257185,38297023,38301826	0.714286
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	8681599	8681600	8681599	+	High_confidence	11	13	16	1.330517	3.323231	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.750000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	52615437	52615444	52615437	-	High_confidence	4	4	8	0.665259	2.521641	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.875000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	239578371	239578391	239578371	+	High_confidence	5	5	14	1.164202	2.815072	chr2	239578371	239578718	LTR|ERVL|MLT2B1	-	chr2	239578300	239586094	AC079612.1|ENST00000358775.1	+	239578300,239583018	239578924,239586094	0.928571
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr15	75693082	75693086	75693082	-	RAMPAGE_only	5	5	10	0.831573	2.725481	chr15	75692930	75693052	SINE|MIR|MIR3	-	chr15	75674321	75712848	CSPG4|NM_001897.4	-	75674321,75677702,75682292,75682606,75682842,75684735,75685218,75687275,75693069,75712667	75677384,75677886,75682459,75682741,75683041,75684912,75685701,75690812,75693233,75712848	0.900000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr17	59620048	59620080	59620048	+	High_confidence	2	2	8	0.665259	3.000000	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr11	17282857	17282915	17282885	+	RAMPAGE_only	3	3	19	1.579989	3.794653	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.947368
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr9	73160436	73160483	73160436	+	High_confidence	5	5	17	1.413674	3.852169	chr9	73160421	73160511	SINE|MIR|MIR	+	chr9	73160262	73170393	MSTRG.145088.8	+	73160262,73162781,73163475,73165115,73166096,73167496,73169031,73170050	73160893,73162861,73163532,73165209,73166192,73167555,73169154,73170393	0.647059
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	35902456	35902466	35902459	+	High_confidence	2	3	8	0.665259	2.521641	chr19	35901853	35902464	LINE|L2|L2b	+	chr19	35902479	35904271	HCST|NM_014266.3	+	35902479,35903350,35903771,35904119	35902636,35903416,35903903,35904271	0.875000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	21833817	21833855	21833827	-	High_confidence	13	13	43	3.575765	4.711035	chr1	21833729	21833783	LINE|L2|L2c	-	chr1	21829992	21833577	HSPG2|ENST00000635682.1	-	21829992,21830981,21831214,21831462,21831651,21832494,21832874,21833267,21833466	21830091,21831090,21831324,21831562,21831796,21832606,21832892,21833384,21833577	0.976744
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr18	2589102	2589121	2589120	+	RAMPAGE_only	4	5	10	0.831573	2.947703	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	0.900000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr10	126039295	126039336	126039295	-	RAMPAGE_only	13	14	39	3.243135	4.391490	chr10	126038952	126039246	SINE|Alu|AluYc	-	chr10	126012380	126388455	ADAM12|ENST00000368679.8	-	126012380,126019694,126036145,126038240,126039293,126043039,126046054,126049252,126049560,126064805,126066716,126071476,126093984,126098415,126101071,126108592,126109774,126118037,126135583,126155217,126278914,126330411,126388057	126017339,126019825,126036325,126038349,126039429,126043148,126046132,126049451,126049669,126065001,126066806,126071654,126094133,126098500,126101241,126108664,126109840,126118224,126135660,126155305,126278988,126330509,126388455	0.948718
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	157384903	157384904	157384903	-	High_confidence	7	7	9	0.748416	3.000000	chr5	157384657	157384963	SINE|Alu|AluSx1	+	chr5	157375740	157384939	AC008676.1|ENST00000508443.1	-	157375740,157384212	157376945,157384939	0.555556
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	75127183	75127207	75127183	-	RAMPAGE_only	6	6	12	0.997888	3.277613	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.833333
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr16	4642169	4642179	4642178	+	RAMPAGE_only	9	9	22	1.829461	3.141446	chr16	4642124	4642285	SINE|Alu|AluSz	-	chr16	4650386	4680067	MGRN1|ENST00000590790.5	+	4650386,4651962,4652677,4657245,4664708,4665098,4668264,4671390,4673497,4677462,4680031	4650483,4652051,4652824,4657363,4664775,4665151,4668312,4671459,4673657,4677572,4680067	0.772727
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr9	129488756	129488857	129488856	+	High_confidence	65	65	167	13.887272	4.728520	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	56835476	56835482	56835481	-	High_confidence	11	11	20	1.663146	4.037401	chr19	56835430	56835525	LINE|L2|L2c	+	chr19	56774593	56836078	ZIM2|ENST00000595671.5	-	56774593,56779376,56781952,56782399,56789871,56817745,56818599,56821650,56822752,56823589,56824261,56836017	56775529,56779472,56782121,56782471,56789951,56817838,56818702,56821754,56822836,56823679,56824427,56836078	0.700000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr11	85773514	85773535	85773516	-	RAMPAGE_only	4	7	13	1.081045	2.873141	chr11	85773277	85773644	LINE|L2|L2c	+	chr11	85694220	85758069	SYTL2|NM_001162951.2	-	85694220,85696182,85697978,85700514,85704857,85707428,85709330,85711112,85714412,85718789,85720857,85727895,85733938,85736500,85737574,85745636,85748271,85757624	85695340,85696388,85698078,85700593,85705028,85707531,85709500,85711232,85714507,85718843,85720959,85727967,85734742,85736612,85737656,85745772,85748423,85758069	0.769231
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	180692008	180692009	180692008	+	High_confidence	8	8	10	0.831573	2.721928	chr2	180691204	180692425	LTR|ERV1|LTR12C	+	chr2	180692103	180916939	SCHLAP1|NR_104322.1	+	180692103,180724595,180725190,180823932,180827240,180899649,180916272	180692441,180724690,180725291,180824070,180827507,180899718,180916939	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr11	8771791	8771794	8771793	-	RAMPAGE_only	7	10	13	1.081045	3.251629	chr11	8771676	8772009	LTR|ERVL-MaLR|MSTD	-	chr11	8730856	8774301	ST5|ENST00000533681.5	-	8730856,8750620,8774121	8731209,8750725,8774301	0.846154
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	166850306	166850323	166850322	+	RAMPAGE_only	4	4	10	0.831573	2.521928	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr11	77175289	77175303	77175291	+	High_confidence	4	6	12	0.997888	2.855389	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr6	142308185	142308186	142308185	+	RAMPAGE_only	11	11	16	1.330517	2.872906	chr6	142308138	142308365	SINE|MIR|MIRb	-	chr6	142302625	142367890	ADGRG6|ENST00000435011.6	+	142302625,142309543,142367565	142302739,142309644,142367890	0.875000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	169812903	169812904	169812903	-	High_confidence	14	14	15	1.247360	3.182006	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.933333
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr7	137268349	137268383	137268382	-	High_confidence	10	10	41	3.409450	4.336183	chr7	137267941	137268351	LTR|ERV1|HERVE_a-int	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.951220
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr15	30493741	30493758	30493741	+	RAMPAGE_only	4	4	8	0.665259	2.500000	chr15	30493661	30493815	DNA|hAT-Charlie|MER20	+	chr15	30484543	30507623	AC127502.1|ENST00000564861.1	+	30484543,30493588,30507376	30484686,30493816,30507623	0.875000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr13	112703291	112703318	112703291	+	High_confidence	6	6	19	1.579989	3.576618	chr13	112703103	112703441	LTR|ERVL-MaLR|MLT1A	-	chr13	112703286	112810699	ATP11A|ENST00000466946.5	+	112703286,112785134,112804956,112806212,112810618	112703342,112785257,112805046,112806293,112810699	0.526316
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr9	125567576	125567577	125567576	+	High_confidence	13	13	14	1.164202	3.546594	chr9	125567192	125567732	LTR|ERV1|MER41A	+	chr9	125567578	125573023	AL162584.1|ENST00000437097.1	+	125567578,125568760,125572894	125567993,125568849,125573023	0.785714
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr7	100818527	100818581	100818527	-	RAMPAGE_only	4	4	24	1.995776	3.969002	chr7	100818323	100818478	SINE|MIR|MIRb	-	chr7	100806417	100814088	EPHB4|ENST00000478459.5	-	100806417,100807364,100812746,100813094,100813651,100813918	100806569,100807580,100812994,100813208,100813716,100814088	0.833333
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr10	21070044	21070067	21070044	-	RAMPAGE_only	4	4	14	1.164202	3.039149	chr10	21069984	21070246	SINE|5S-Deu-L2|AmnSINE1	-	chr10	20779972	21174187	NEBL|NM_213569.2	-	20779972,20787201,20812768,20961671,21020116,21172382,21173764	20785923,20787308,20812940,20961779,21020201,21172477,21174187	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	86482577	86482578	86482577	+	RAMPAGE_only	15	15	16	1.330517	3.373557	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.812500
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	196404210	196404217	196404216	-	RAMPAGE_only	4	4	8	0.665259	3.000000	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225782	196465387	KCNT2|ENST00000498426.5	-	196225782,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196317173,196331155,196333846,196340340,196342078,196373139,196398562,196423049,196425851,196428104,196429576,196465292	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196317269,196331261,196334060,196340570,196342228,196373248,196398671,196423113,196425988,196428269,196429757,196465387	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	45292794	45292829	45292794	+	High_confidence	2	2	10	0.831573	2.725481	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.800000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	62030101	62030144	62030113	+	RAMPAGE_only	19	20	79	6.569428	4.483773	chr2	62029832	62030441	LTR|ERV1|MER39B	-	chr2	61905646	62136247	COMMD1|ENST00000311832.5	+	61905646,62000700,62135830	61905858,62000982,62136247	0.911392
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr16	760891	760925	760924	+	High_confidence	11	11	30	2.494720	3.715932	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	0.966667
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr9	129489124	129489141	129489124	+	High_confidence	2	5	10	0.831573	2.725481	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.900000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr16	2757793	2757811	2757793	+	High_confidence	7	9	22	1.829461	3.821928	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.909091
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	48529375	48529392	48529391	+	High_confidence	11	11	30	2.494720	3.655046	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	0.733333
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr16	81664292	81664332	81664292	+	RAMPAGE_only	3	3	14	1.164202	2.968919	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645738	81700579	MSTRG.52444.8	+	81645738,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81700509	81645781,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81700579	0.928571
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr6	143966040	143966120	143966119	-	RAMPAGE_only	18	19	62	5.155754	5.054029	chr6	143966082	143966184	LINE|L2|L2	+	chr6	143940301	143968838	PLAGL1|ENST00000392307.2	-	143940301,143942506,143964786	143942388,143942663,143968838	0.887097
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	48868595	48868631	48868595	-	High_confidence	174	179	752	62.534302	7.105004	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.993351
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	122064308	122064376	122064375	+	RAMPAGE_only	9	9	38	3.159978	4.668980	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.684211
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr8	28846959	28846960	28846959	-	RAMPAGE_only	5	5	8	0.665259	2.807355	chr8	28846894	28847049	SINE|MIR|MIR3	-	chr8	28813491	28859503	INTS9|ENST00000520437.1	-	28813491,28835291,28837636,28859435	28813612,28835378,28837776,28859503	0.875000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	7913233	7913268	7913267	-	RAMPAGE_only	3	3	6	0.498944	2.584963	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7847611	7853491	UTS2|NM_021995.2	-	7847611,7849639,7850811,7852900,7853306	7847882,7849683,7850922,7852923,7853491	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	13037411	13037412	13037411	+	RAMPAGE_only	8	8	12	0.997888	3.251629	chr19	13037335	13037620	LINE|CR1|L3b	+	chr19	13024938	13094770	NFIX|ENST00000587260.1	+	13024938,13073046,13073421,13073905,13075534,13078612,13081679,13090298,13094634	13025552,13073109,13073496,13074026,13075671,13078735,13081855,13090390,13094770	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr14	100903704	100903726	100903704	-	High_confidence	7	7	13	1.081045	2.777363	chr14	100903521	100903697	SINE|MIR|MIRb	-	chr14	100879752	100903722	RTL1|ENST00000649591.1	-	100879752,100893443,100903290,100903604	100884874,100893505,100903386,100903722	0.923077
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	102431247	102431248	102431247	-	High_confidence	9	9	14	1.164202	3.546594	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.857143
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	69773755	69773781	69773780	-	RAMPAGE_only	4	4	10	0.831573	2.846439	chr4	69773518	69773984	LTR|ERV1|MER41A	+	chr4	69721161	69760712	SULT1B1|ENST00000310613.7	-	69721161,69730500,69733412,69734137,69749720,69754669,69755069,69760458	69727200,69730681,69733507,69734264,69749818,69754798,69755261,69760712	0.900000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr14	100831386	100831525	100831524	+	RAMPAGE_only	6	7	50	4.157866	4.604833	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100826132	100847301	MSTRG.44197.26	+	100826132,100828707,100829033,100836166,100845457,100845875	100826217,100828816,100834751,100836300,100845533,100847301	0.960000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr13	30743872	30743906	30743872	+	RAMPAGE_only	10	10	47	3.908394	3.742836	chr13	30743467	30743894	LINE|L2|L2c	+	chr13	30735507	30764426	ALOX5AP|ENST00000380490.4	+	30735507,30744059,30752051,30755943,30763943	30735675,30744159,30752122,30756025,30764426	0.829787
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	16017942	16017988	16017942	-	High_confidence	5	5	16	1.330517	3.006239	chr1	16017886	16017984	LINE|CR1|L3	+	chr1	16015498	16018005	HSPB7|ENST00000406363.2	-	16015498,16017073,16017764	16015759,16017219,16018005	0.875000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr10	84172094	84172095	84172094	-	High_confidence	54	54	61	5.072596	5.169146	chr10	84171986	84172465	LTR|ERV1|LTR2B	-	chr10	84167227	84172093	CERNA2|ENST00000647830.1	-	84167227,84171721	84168729,84172093	0.639344
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr8	11795578	11795579	11795578	+	High_confidence	359	362	384	31.932410	5.148430	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.947917
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr14	81192654	81192717	81192654	-	RAMPAGE_only	6	6	33	2.744191	4.453881	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.939394
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	68053084	68053132	68053131	-	RAMPAGE_only	5	7	24	1.995776	3.555533	chr2	68052911	68053126	SINE|MIR|MIR	-	chr2	68042713	68046568	C1D|ENST00000479484.1	-	68042713,68045987,68046343	68043053,68046043,68046568	0.958333
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr21	35359226	35359260	35359241	-	RAMPAGE_only	13	14	55	4.573652	3.885639	chr21	35359112	35359279	LINE|L1|L1ME4b	-	chr21	35349681	35349927	MSTRG.80929.1	-	35349681	35349927	0.872727
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	152267467	152267486	152267467	-	RAMPAGE_only	2	2	11	0.914730	3.277613	chr3	152267213	152267496	LINE|L2|L2c	+	chr3	152262615	152269555	MBNL1-AS1|ENST00000608395.1	-	152262615,152269427	152269072,152269555	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr8	11795986	11796010	11795986	+	High_confidence	12	13	34	2.827349	4.594672	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839304	FDFT1|ENST00000618539.4	+	11795572,11802257,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802455,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839304	0.852941
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr20	37297344	37297345	37297344	+	High_confidence	4	4	7	0.582101	2.521641	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	1655409	1655410	1655409	-	RAMPAGE_only	6	6	8	0.665259	2.807355	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.625000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	109383446	109383504	109383446	-	High_confidence	4	4	22	1.829461	3.784942	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.954545
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr9	2110849	2110856	2110849	+	High_confidence	3	3	13	1.081045	3.546594	chr9	2110738	2110916	SINE|MIR|MIRb	-	chr9	2110356	2186121	SMARCA2|ENST00000634772.1	+	2110356,2119457,2123718,2161685,2181570,2182140,2186095	2110417,2119535,2123937,2161903,2181676,2182242,2186121	0.846154
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	166850222	166850266	166850265	+	RAMPAGE_only	3	3	9	0.748416	3.000000	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.888889
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr17	4143199	4143215	4143199	+	High_confidence	18	19	65	5.405226	4.737001	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.984615
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr9	98943533	98943578	98943575	+	High_confidence	18	23	50	4.157866	4.872577	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943521	99070792	MSTRG.146220.2	+	98943521,98943954,98944161,98985564,98987293,98989177,98996933,99000838,99003452,99004897,99015416,99015975,99020388,99022090,99023356,99024873,99025903,99034548,99035013,99035349,99036169,99036312,99038667,99040520,99042044,99044567,99044734,99047785,99047940,99049689,99049853,99052387,99054575,99055101,99055261,99056259,99059888,99061970,99062244,99063049,99066881,99068554,99069672	98943628,98944072,98944250,98986112,98987368,98989258,98997081,99000951,99003587,99005050,99015566,99016119,99020442,99022150,99023449,99024999,99025966,99034584,99035154,99035418,99036205,99036396,99038733,99040556,99042107,99044636,99044770,99047839,99048000,99049758,99049895,99052433,99054656,99055151,99055372,99056404,99059953,99062099,99062304,99063109,99067067,99068670,99070792	0.620000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr13	43062220	43062230	43062229	+	RAMPAGE_only	8	8	16	1.330517	3.875000	chr13	43062071	43062490	LTR|ERVL|LTR33	-	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.687500
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	142474388	142474408	142474407	-	High_confidence	11	12	20	1.663146	3.403702	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.950000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chrX	5726324	5726325	5726324	-	High_confidence	109	114	123	10.228350	4.938039	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.788618
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	89681469	89681505	89681504	+	RAMPAGE_only	3	5	12	0.997888	3.095795	chr4	89681260	89681677	LTR|ERV1|MER61C	+	chr4	89627783	89720172	AC097478.1|ENST00000507916.6	+	89627783,89691284,89719825	89627917,89691405,89720172	0.500000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	26832797	26832805	26832797	-	High_confidence	2	2	8	0.665259	2.807355	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26716161	26832786	ITPR2|ENST00000545235.1	-	26716161,26722396,26724655,26725649,26832689	26716242,26722555,26724742,26725765,26832786	0.625000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr9	122164568	122164596	122164595	+	RAMPAGE_only	25	34	81	6.735743	5.101002	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122166767	122200083	MORN5|ENST00000486801.1	+	122166767,122174495,122199884	122166915,122174627,122200083	0.913580
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	56157351	56157459	56157351	+	High_confidence	8	8	57	4.739967	4.676466	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.824561
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr20	50131135	50131140	50131139	-	High_confidence	95	99	166	13.804115	6.005444	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.981928
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	3536839	3536875	3536839	-	High_confidence	9	9	37	3.076821	4.650572	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.864865
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	215848877	215848878	215848877	-	RAMPAGE_only	24	24	26	2.162090	3.886842	chr2	215848652	215849119	LTR|ERVL|MER70B	-	chr2	215743819	215843722	LINC00607|ENST00000417922.1	-	215743819,215747303,215750242,215843325,215843623	215743914,215747394,215750417,215843423,215843722	0.769231
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr17	59651214	59651281	59651214	+	RAMPAGE_only	7	7	25	2.078933	3.555533	chr17	59650639	59651221	LINE|L1|L1MD1	-	chr17	59655960	59663992	CLTC|ENST00000483176.2	+	59655960,59658661,59660390,59661442,59663841	59656027,59658804,59660588,59661643,59663992	0.920000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	96303166	96303178	96303166	-	RAMPAGE_only	9	9	25	2.078933	4.133661	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr6	31587201	31587202	31587201	+	High_confidence	14	14	17	1.413674	3.155639	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.941176
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr17	4187108	4187109	4187108	-	RAMPAGE_only	8	8	11	0.914730	2.921928	chr17	4187012	4187196	LINE|L1|L1PB2	-	chr17	4163370	4263847	ANKFY1|NM_001257999.1	-	4163370,4169197,4170714,4172555,4173353,4173908,4177125,4178856,4179720,4181253,4182180,4183397,4183811,4184817,4189381,4194977,4195402,4197372,4206320,4207932,4209823,4216982,4235771,4242255,4263594	4167911,4169288,4170861,4172680,4173444,4174056,4177302,4179057,4179877,4181372,4182349,4183551,4183910,4185046,4189479,4195177,4195471,4197577,4206486,4208082,4209947,4217118,4235890,4242448,4263847	0.545455
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr7	137254882	137254941	137254940	-	RAMPAGE_only	10	12	78	6.486271	4.872863	chr7	137254934	137254992	SINE|tRNA|LFSINE_Vert	+	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chrX	74000305	74000351	74000350	+	RAMPAGE_only	4	4	9	0.748416	2.725481	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	212688406	212688483	212688482	-	High_confidence	7	8	41	3.409450	4.056198	chr1	212688077	212688769	LINE|CR1|L3	-	chr1	212686417	212687509	BATF3|ENST00000471382.5	-	212686417,212687466	212686979,212687509	0.658537
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr8	30729040	30729041	30729040	+	RAMPAGE_only	28	28	33	2.744191	3.320356	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30732246	30766470	UBXN8|ENST00000620074.4	+	30732246,30744327,30751395,30753034,30754664,30756764,30760887,30763272,30766226	30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763347,30766470	0.818182
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr6	37320182	37320183	37320182	+	RAMPAGE_only	20	20	24	1.995776	3.068030	chr6	37320221	37320448	SINE|MIR|MIR	+	chr6	37257771	37332970	TBC1D22B|ENST00000373491.3	+	37257771,37269593,37279303,37282184,37282881,37284335,37287006,37291242,37312917,37313815,37316702,37317110,37331043	37257973,37269650,37279611,37282364,37282952,37284464,37287072,37291357,37313024,37313891,37316830,37317206,37332970	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	110440313	110440320	110440313	-	RAMPAGE_only	4	4	9	0.748416	3.000000	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.888889
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr14	100829421	100829975	100829554	+	High_confidence	53	75	732	60.871156	7.164112	chr14	100829596	100829639	LINE|L2|L2b	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.938525
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr9	121313949	121314021	121314002	+	RAMPAGE_only	14	14	49	4.074709	4.148415	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	19980362	19980363	19980362	-	High_confidence	4	7	7	0.582101	2.521641	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr15	58851912	58851958	58851957	+	RAMPAGE_only	6	6	16	1.330517	3.625000	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58845376	58861547	MSTRG.46880.7	+	58845376,58847296,58851770,58854484	58845435,58847470,58851965,58861547	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr11	64242486	64242547	64242546	+	High_confidence	7	7	26	2.162090	3.943465	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.961538
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr7	134711483	134711504	134711503	+	RAMPAGE_only	18	18	30	2.494720	4.513153	chr7	134711275	134711628	LTR|ERVL|MLT2D	+	chr7	134744251	134968402	CALD1|ENST00000417172.5	+	134744251,134843883,134867692,134928753,134932987,134941091,134947507,134950373,134958068,134958208,134959973,134960532,134965305,134968339	134744363,134843971,134867804,134928900,134933390,134941237,134947769,134950514,134958112,134958290,134960111,134960628,134965386,134968402	0.666667
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	45292684	45292686	45292685	+	High_confidence	5	7	11	0.914730	2.846439	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.909091
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	152347679	152347680	152347679	-	RAMPAGE_only	12	12	12	0.997888	2.584963	chr5	152347584	152347683	DNA|TcMar-Mariner|MADE1	+	chr5	151661095	151687230	MSTRG.114718.1	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687230	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	135730349	135730393	135730392	+	RAMPAGE_only	22	23	39	3.243135	4.590033	chr5	135730211	135730571	LTR|ERVL-MaLR|THE1B	+	chr5	135609311	135824863	MSTRG.113676.4	+	135609311,135629236,135634768,135671663,135714681,135812522,135824402	135609728,135629376,135634956,135671747,135714821,135812926,135824863	0.846154
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	122917884	122917912	122917911	-	RAMPAGE_only	3	3	6	0.498944	2.584963	chr4	122917758	122918008	LINE|L2|L2b	+	chr4	122892649	122922442	NUDT6|ENST00000510735.1	-	122892649,122897623,122922334	122893225,122897678,122922442	0.833333
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	233691709	233691710	233691709	+	High_confidence	11	11	14	1.164202	3.521641	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233691709	233772341	UGT1A6|ENST00000446481.6	+	233691709,233693798,233767033,233767848,233768219,233769530,233772261	233691820,233693865,233767165,233767936,233768439,233769664,233772341	0.500000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	142621149	142621154	142621149	-	High_confidence	3	3	8	0.665259	2.750000	chr5	142620934	142621256	LINE|L2|L2c	+	chr5	142592177	142621342	FGF1|ENST00000359370.10	-	142592177,142600701,142613958,142621296	142595484,142600805,142614161,142621342	0.750000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chrX	115647957	115648010	115647987	+	RAMPAGE_only	5	5	30	2.494720	4.137538	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.933333
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr11	65181205	65181244	65181222	+	High_confidence	3	3	9	0.748416	2.750000	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	0.888889
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr11	7906253	7906295	7906294	-	High_confidence	10	10	28	2.328405	3.986188	chr11	7906232	7906607	LTR|ERV1|LTR10C	-	chr11	7850750	7906174	MSTRG.19609.6	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602,7906104	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905825,7906174	0.714286
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	188225402	188225405	188225404	+	High_confidence	2	4	7	0.582101	2.584963	chr3	188225342	188225427	SINE|MIR|MIR3	-	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	0.857143
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	189722264	189722291	189722290	-	High_confidence	4	4	13	1.081045	3.026987	chr4	189721949	189722303	LINE|L1|L1M3b	+	chr4	189708253	189722252	MSTRG.105852.1	-	189708253,189722176	189708489,189722252	0.615385
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr22	37755653	37755658	37755653	+	RAMPAGE_only	5	5	10	0.831573	2.646439	chr22	37755671	37755809	SINE|MIR|MIR1_Amn	+	chr22	37751397	37758047	TRIOBP|ENST00000417857.1	+	37751397,37751771,37754876,37755100,37755549,37757612	37751516,37751828,37754984,37755190,37755659,37758047	0.900000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	151687314	151687325	151687324	-	High_confidence	8	8	13	1.081045	3.418296	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687230	MSTRG.114718.1	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687230	0.923077
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr21	45161677	45161678	45161677	+	RAMPAGE_only	8	8	8	0.665259	3.000000	chr21	45161105	45162583	LTR|ERV1|MER52A	+	chr21	45981736	46005050	COL6A1|ENST00000361866.7	+	45981736,45982633,45984268,45986525,45986943,45987154,45987498,45987609,45989083,45989607,45989751,45990257,45990377,45990772,45990978,45992009,45992163,45992362,45992747,45994166,45997420,45997699,45998120,45998397,45998896,45999152,45999656,46000330,46000758,46001252,46001960,46002217,46002526,46003119,46003390	45981947,45982763,45984469,45986685,45987072,45987175,45987519,45987654,45989137,45989652,45989778,45990284,45990422,45990826,45991041,45992072,45992217,45992398,45992810,45994229,45997483,45997762,45998171,45998433,45998959,45999218,45999692,46000367,46000767,46001386,46002070,46002401,46002710,46003149,46005050	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	11196100	11196132	11196131	-	High_confidence	8	8	31	2.577877	3.771437	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.870968
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chrX	13606464	13606510	13606509	+	RAMPAGE_only	7	7	37	3.076821	3.417064	chrX	13606482	13606534	LINE|RTE-BovB|MamRTE1	-	chrX	13569621	13633575	EGFL6|ENST00000380602.3	+	13569621,13589555,13594835,13599974,13603316,13606378,13608323,13617729,13619162,13623820,13627010,13632984	13569935,13589668,13594928,13600094,13603436,13606513,13608446,13618053,13619243,13623925,13627276,13633575	0.945946
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr16	74485828	74485869	74485828	-	RAMPAGE_only	3	4	16	1.330517	3.589898	chr16	74485740	74485842	DNA|hAT-Ac|OldhAT1	+	chr16	74451958	74607094	GLG1|ENST00000422840.6	-	74451958,74456648,74457873,74459681,74462093,74462487,74463355,74465675,74467755,74468945,74469984,74471172,74472348,74474545,74477395,74480240,74483022,74485795,74491000,74492956,74494759,74496440,74503530,74508838,74532120,74606656	74453334,74456755,74457994,74459789,74462195,74462630,74463479,74465813,74467848,74469063,74470073,74471286,74472411,74474632,74477533,74480394,74483124,74485917,74491215,74493140,74494831,74496644,74503746,74508925,74532153,74607094	0.875000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	61517417	61517444	61517440	+	RAMPAGE_only	16	16	46	3.825237	4.569773	chr4	61517137	61518029	DNA|hAT-Charlie|Charlie17b	+	chr4	61497293	62071127	ADGRL3|ENST00000514996.5	+	61497293,61587226,61676825,61730621,61732753,61813808,61892655,61895730,61909559,61912718,61934839,61935922,61946913,61948099,61979562,61983382,61996290,61998173,62031441,62037730,62044452,62063504,62070108	61497348,61587440,61676935,61730636,61733554,61813889,61892958,61895834,61909745,61912757,61935023,61936045,61947122,61948276,61979772,61983603,61996357,61998265,62031610,62037856,62044549,62063633,62071127	0.934783
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr10	32446945	32446988	32446977	+	High_confidence	8	8	19	1.579989	3.836592	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.894737
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	189571715	189571745	189571744	-	RAMPAGE_only	3	3	7	0.582101	2.521641	chr2	189571695	189571755	LINE|CR1|L3	+	chr2	189560589	189580811	SLC40A1|NM_014585.5	-	189560589,189563583,189565353,189571714,189572845,189575160,189579812,189580417	189562191,189564225,189565599,189571841,189572961,189575320,189579880,189580811	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	45524105	45524131	45524130	+	RAMPAGE_only	9	9	16	1.330517	3.202820	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.687500
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr20	3795750	3795823	3795788	+	High_confidence	21	22	129	10.727294	5.004373	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.984496
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr10	3263768	3263792	3263791	+	RAMPAGE_only	3	3	9	0.748416	2.947703	chr10	3263810	3263910	DNA|hAT-Charlie|MER5A1	+	chr10	3266002	3267015	AL139280.1|ENST00000436340.1	+	3266002,3266657	3266107,3267015	0.666667
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr21	33945809	33945810	33945809	-	RAMPAGE_only	8	8	8	0.665259	2.750000	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	174874385	174874439	174874438	+	High_confidence	6	6	37	3.076821	4.777021	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874457	174958182	RABGAP1L|ENST00000478442.5	+	174874457,174877391,174957456,174957890	174874506,174877605,174957549,174958182	0.540541
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chrY	4036475	4036532	4036531	+	High_confidence	32	32	89	7.401001	4.380287	chrY	4036436	4036630	LTR|ERV1|PABL_B	-	chrY	4036496	4100320	AC010737.1|ENST00000426699.1	+	4036496,4099985	4036720,4100320	0.943820
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	122917806	122917835	122917834	-	RAMPAGE_only	6	7	11	0.914730	2.846439	chr4	122917758	122918008	LINE|L2|L2b	+	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	0.909091
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	46266488	46266516	46266515	-	High_confidence	8	9	26	2.162090	4.243856	chr12	46266441	46266766	LINE|L2|L2a	+	chr12	46183054	46266495	SLC38A1|NM_001278389.1	-	46183054,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678,46243199,46266445	46189071,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239893,46243314,46266495	0.692308
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	240022215	240022269	240022215	-	RAMPAGE_only	9	9	22	1.829461	3.174674	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	0.954545
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr11	123061198	123061257	123061256	-	High_confidence	37	49	114	9.479934	5.133709	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.947368
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr8	120125627	120125637	120125627	+	High_confidence	10	10	25	2.078933	3.323074	chr8	120125674	120125869	DNA|hAT-Tip100?|MamRep1879	+	chr8	120125143	120277865	COL14A1|ENST00000432943.6	+	120125143,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120277484	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120277865	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	91179044	91179089	91179044	-	High_confidence	4	4	27	2.245248	4.133661	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.888889
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr13	48492620	48492656	48492655	-	High_confidence	3	3	10	0.831573	2.725481	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.800000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	217842173	217842185	217842173	-	High_confidence	8	8	28	2.328405	4.208966	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.964286
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	166185025	166185032	166185025	+	RAMPAGE_only	11	11	24	1.995776	3.969002	chr2	166184665	166185205	LINE|L2|L2a	-	chr2	166149180	166294588	AC010127.1|ENST00000630020.2	+	166149180,166171386,166199638,166248194,166249342,166251833,166277087,166294564	166149572,166171558,166199818,166248276,166249384,166251912,166277247,166294588	0.625000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr8	53523885	53523886	53523885	-	High_confidence	4	4	7	0.582101	2.807355	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr9	39810023	39810094	39810093	-	High_confidence	6	6	25	2.078933	4.053661	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.760000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr16	761051	761120	761114	+	High_confidence	26	29	109	9.064148	5.250927	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.963303
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chrX	16712878	16712890	16712879	-	High_confidence	4	8	15	1.247360	3.373557	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	47610750	47610801	47610800	-	High_confidence	19	24	54	4.490495	4.697181	chr3	47610404	47610841	LINE|CR1|L3	-	chr3	47590805	47610798	SMARCC1|ENST00000492896.1	-	47590805,47610065,47610524	47590837,47610327,47610798	0.814815
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr16	4355592	4355593	4355592	-	High_confidence	40	40	40	3.326293	3.715312	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.950000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr22	39021141	39021156	39021150	+	High_confidence	3	4	9	0.748416	2.947703	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr13	24968471	24968477	24968471	-	High_confidence	4	4	11	0.914730	3.095795	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24928754	24968469	TPTE2P1|NR_026730.1	-	24928754,24941986,24942931,24951396,24968205	24934663,24942108,24943021,24951488,24968469	0.545455
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	997305	997319	997318	-	High_confidence	10	10	24	1.995776	3.414441	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.958333
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr17	16773307	16773327	16773326	+	RAMPAGE_only	3	3	10	0.831573	2.725481	chr17	16773166	16773451	SINE|Alu|AluJb	+	chr17	16786488	16798429	USP32P1|ENST00000417524.5	+	16786488,16796042,16798241	16787122,16796234,16798429	0.500000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	155085060	155085078	155085077	+	High_confidence	12	15	27	2.245248	4.074876	chr3	155085055	155085093	LINE|L2|L2	-	chr3	155084167	155183729	MME|ENST00000615825.1	+	155084167,155085058,155114993,155116478,155116663,155116867,155118745,155138101,155140190,155141990,155142236,155143442,155144358,155147143,155148549,155160389,155166901,155168491,155168731,155172116,155172535,155180359	155084327,155085094,155115155,155116559,155116759,155116986,155118811,155138236,155140292,155142127,155142330,155143571,155144457,155147224,155148653,155160448,155167021,155168625,155168797,155172212,155172612,155183729	0.962963
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	135965710	135965749	135965718	+	High_confidence	8	10	54	4.490495	4.587472	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.962963
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	78620057	78620058	78620057	+	High_confidence	15	19	19	1.579989	3.892407	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.842105
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	218287266	218287280	218287266	-	High_confidence	8	8	24	1.995776	3.803509	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.958333
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr5	84085705	84085752	84085705	-	High_confidence	19	21	51	4.241023	3.615338	chr5	84085110	84086606	LINE|L1|L1P3	-	chr5	84060294	84085792	MSTRG.110336.4	-	84060294,84064699,84066450,84085158	84060484,84064844,84066606,84085792	0.980392
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr20	50451125	50451140	50451125	+	RAMPAGE_only	6	6	14	1.164202	3.093069	chr20	50451103	50451426	LTR|ERVL-MaLR|MLT1G3	+	chr20	50510320	50584762	PTPN1|NM_001278618.1	+	50510320,50564968,50568379,50574516,50578419,50579167,50579702,50581264,50582691	50510590,50565069,50568478,50574654,50578629,50579329,50579926,50581460,50584762	0.642857
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr4	21544656	21544692	21544656	-	High_confidence	6	6	22	1.829461	4.070656	chr4	21544311	21544682	LTR|ERVL-MaLR|MLT1E2	-	chr4	20728615	21544656	KCNIP4|NM_001035004.1	-	20728615,20732005,20732680,20734627,20749661,20758820,20850542,21544389	20730129,20732068,20732785,20734735,20749732,20758890,20850667,21544656	0.545455
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr18	7946878	7946888	7946878	+	High_confidence	33	33	55	4.573652	4.318526	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.909091
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	134485414	134485471	134485449	-	High_confidence	11	12	39	3.243135	4.594456	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.871795
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr9	92536601	92536602	92536601	-	High_confidence	6	7	7	0.582101	2.584963	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.857143
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr1	147173180	147173204	147173203	+	High_confidence	3	3	11	0.914730	2.521928	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.727273
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr11	86395119	86395174	86395119	+	High_confidence	43	43	217	18.045138	6.313821	chr11	86395046	86395200	DNA|TcMar-Mariner|MARNA	+	chr11	86395173	86423109	CCDC81|ENST00000528728.1	+	86395173,86397620,86400677,86407613,86409260,86412386,86414788,86415092,86419927,86422573	86395413,86397742,86400801,86407701,86409365,86412559,86414867,86415313,86420053,86423109	0.861751
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr14	100569593	100569612	100569593	-	High_confidence	5	5	14	1.164202	2.699514	chr14	100569527	100569624	LINE|L2|L2b	+	chr14	100538887	100569558	BEGAIN|ENST00000556188.5	-	100538887,100540495,100543857,100544999,100546500,100567910,100569426	100539315,100540579,100543965,100545066,100546662,100567939,100569558	0.785714
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr19	33395166	33395191	33395190	-	High_confidence	8	8	18	1.496832	3.419382	chr19	33395097	33395227	LINE|L2|L2b	+	chr19	33386954	33395148	PEPD|ENST00000591968.1	-	33386954,33387889,33391294,33395109	33387481,33388081,33391479,33395148	1.000000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr11	64226142	64226180	64226158	-	High_confidence	28	30	96	7.983102	5.663130	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.989583
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	8788252	8788253	8788252	+	High_confidence	46	46	50	4.157866	4.861468	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.960000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr18	63587282	63587346	63587345	+	High_confidence	12	12	49	4.074709	5.027889	chr18	63587176	63587346	DNA|hAT-Charlie|MER5B	-	chr18	63587365	63599199	SERPINB13|ENST00000344731.9	+	63587365,63588650,63589655,63592347,63592853,63594354,63595028,63596958	63587450,63588832,63589715,63592476,63592971,63594497,63595184,63599199	0.836735
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	6787003	6787004	6787003	+	RAMPAGE_only	8	8	9	0.748416	2.500000	chr12	6786967	6787079	DNA|hAT-Charlie|MER102c	-	chr12	6789471	6820808	CD4|ENST00000011653.8	+	6789471,6800071,6800306,6814141,6814758,6816055,6817129,6818420,6818846,6819298	6789662,6800187,6800471,6814300,6814992,6816403,6817330,6818542,6818914,6820808	0.888889
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr12	91179462	91179526	91179462	-	High_confidence	2717	2762	7326	609.210504	7.413754	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.913868
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr13	52236177	52236239	52236238	-	RAMPAGE_only	4	4	23	1.912618	4.088779	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52167708	52291557	AL158066.1|ENST00000451298.1	-	52167708,52169986,52171157,52175638,52180581,52183975,52186682,52189638,52223238,52227004,52229325,52233063,52235219,52253744,52253936,52258528,52279840,52280651,52280861,52283237,52289821,52291506	52169304,52170099,52171248,52175776,52180654,52184114,52186823,52189914,52223331,52227096,52229431,52233144,52235281,52253833,52254018,52258590,52279905,52280715,52280961,52283357,52289983,52291557	0.521739
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr3	171821126	171821183	171821141	-	High_confidence	52	53	214	17.795666	6.780730	chr3	171820971	171822002	LINE|CR1|L3	+	chr3	171713877	171821357	MSTRG.92889.10	-	171713877,171724695,171726017,171733443,171734864,171735491,171737531,171737891,171821038,171821329	171714045,171724788,171726076,171733509,171734970,171735637,171737659,171738082,171821211,171821357	0.500000
umbilical_cord_male_fetal_20_weeks_and_male_fetal_31_week	chr2	3536480	3536536	3536522	-	High_confidence	4	4	16	1.330517	3.500000	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr11	307580	307581	307580	-	RAMPAGE_only	11	11	11	0.542439	3.277613	chr11	307491	307788	SINE|Alu|AluY	-	chr11	202925	207428	BET1L|ENST00000382762.7	-	202925,205610,205951,207302	205469,205667,206043,207428	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr7	80369531	80369569	80369534	+	High_confidence	5	6	16	0.789002	3.875000	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.812500
upper_lobe_of_left_lung_female_adult_53_years	chr13	110057302	110057310	110057309	-	High_confidence	4	6	9	0.443814	2.500000	chr13	110056667	110057319	LTR|ERV1|LTR58	+	chr13	110036196	110057286	AL355974.2|ENST00000617298.1	-	110036196,110057125	110036971,110057286	0.555556
upper_lobe_of_left_lung_female_adult_53_years	chr3	140334958	140334969	140334968	+	RAMPAGE_only	5	5	11	0.542439	3.459432	chr3	140334833	140335165	LTR|ERVL|LTR86B2	+	chr3	139935186	140557055	CLSTN2|ENST00000511524.1	+	139935186,140175950,140403628,140404557,140421124,140448518,140459520,140466609,140532323,140546514,140556512	139935483,140176073,140403824,140404766,140421274,140448704,140459769,140466731,140532486,140546681,140557055	0.636364
upper_lobe_of_left_lung_female_adult_53_years	chr10	114121975	114121976	114121975	-	RAMPAGE_only	5	5	8	0.394501	2.750000	chr10	114121801	114122111	SINE|Alu|AluJb	-	chr10	114120900	114132094	STRG.127367.3	-	114120900,114125885,114127460,114129890,114131928	114125226,114126105,114127671,114131336,114132094	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chrUn_GL000219v1	58961	58977	58976	-	RAMPAGE_only	4	4	8	0.394501	2.521641	chrUn_GL000219v1	58601	59054	LTR|ERVL|LTR53-int	-	chrUn_GL000219v1	56348	99642	LOC283788|NR_027436.2	-	56348,78841,79936,83212,88294,97293,99125	58989,78952,80028,83317,88420,97363,99642	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr21	36005313	36005320	36005319	+	High_confidence	53	53	83	4.092948	5.396595	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.963855
upper_lobe_of_left_lung_female_adult_53_years	chr3	189121294	189121345	189121294	+	High_confidence	13	13	47	2.317694	4.192055	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189121124	189121914	STRG.52692.2	+	189121124,189121661	189121371,189121914	0.872340
upper_lobe_of_left_lung_female_adult_53_years	chr20	34369406	34369421	34369406	+	RAMPAGE_only	2	2	8	0.394501	2.807355	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr3	12994714	12994739	12994714	-	High_confidence	1	1	7	0.345188	2.584963	chr3	12994635	12994703	SINE|MIR|MIRc	-	chr3	12908348	12994384	IQSEC1|ENST00000648386.1	-	12908348,12909272,12911628,12913427,12915103,12915593,12920429,12922119,12924580,12935447,12941570,12994080	12908525,12909434,12911728,12913553,12915133,12915733,12920596,12922242,12924742,12936697,12941865,12994384	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr2	170743955	170743956	170743955	-	RAMPAGE_only	29	29	34	1.676629	4.812500	chr2	170743777	170744187	LTR|ERVL|LTR52	-	chr2	170723085	170770766	AC007405.1|ENST00000442456.4	-	170723085,170727284,170727658,170730367,170733878,170740631,170770701	170723593,170727328,170727788,170730997,170733994,170741287,170770766	0.941176
upper_lobe_of_left_lung_female_adult_53_years	chr2	201115902	201116019	201115902	+	High_confidence	10	12	90	4.438137	5.658292	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201176687	CFLAR|ENST00000309955.7	+	201116103,201129728,201133028,201135971,201140356,201145377,201149002,201149753,201160431,201163834	201116481,201130146,201133134,201136107,201140439,201145432,201149052,201149835,201160942,201176687	0.855556
upper_lobe_of_left_lung_female_adult_53_years	chr22	23705513	23705531	23705530	-	RAMPAGE_only	4	4	8	0.394501	2.750000	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23686732	23696019	STRG.195722.9	-	23686732,23694118	23690356,23696019	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr1	166850267	166850330	166850267	+	RAMPAGE_only	4	6	26	1.282128	4.303509	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.923077
upper_lobe_of_left_lung_female_adult_53_years	chr14	85934700	85934710	85934700	+	High_confidence	4	4	11	0.542439	3.121928	chr14	85934517	85934812	LTR|ERV1|LTR12F	+	chr14	85934682	85934975	STRG.159128.1	+	85934682	85934975	0.545455
upper_lobe_of_left_lung_female_adult_53_years	chr3	28291847	28291848	28291847	+	High_confidence	16	16	20	0.986253	4.221928	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.650000
upper_lobe_of_left_lung_female_adult_53_years	chr2	207662407	207662425	207662411	+	High_confidence	2	2	9	0.443814	3.000000	chr2	207662277	207662604	LTR|ERVL-MaLR|MLT1A1	+	chr2	207662429	207667024	LOC102724714|NR_135567.1	+	207662429,207666680	207662522,207667024	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr7	106012326	106012364	106012343	+	RAMPAGE_only	22	22	62	3.057383	5.490408	chr7	106012114	106012744	LINE|L2|L2a	-	chr7	106001547	106032763	STRG.98885.3	+	106001547,106004497,106015110,106015926,106017845,106020372,106022197,106024380,106026681,106028550,106030791,106032392	106001610,106013031,106015213,106016025,106018072,106020544,106022448,106024562,106026695,106028582,106030840,106032763	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr3	136625270	136625271	136625270	-	RAMPAGE_only	27	27	30	1.479379	4.253434	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr1	185950493	185950518	185950517	+	High_confidence	11	11	26	1.282128	4.501629	chr1	185950481	185950631	LTR|ERV1|HERVH-int	-	chr1	185950563	185951293	STRG.13713.1	+	185950563	185951293	0.884615
upper_lobe_of_left_lung_female_adult_53_years	chr13	48492576	48492623	48492622	-	High_confidence	4	4	8	0.394501	3.000000	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr5	77088097	77088109	77088108	+	High_confidence	19	24	39	1.923193	4.649115	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.615385
upper_lobe_of_left_lung_female_adult_53_years	chr2	196176330	196176332	196176331	-	High_confidence	12	16	19	0.936940	3.932138	chr2	196176299	196176378	LINE|RTE-BovB|MamRTE1	-	chr2	196156571	196176327	STK17B|ENST00000420683.1	-	196156571,196163261,196174248,196176225	196156651,196163427,196174407,196176327	0.894737
upper_lobe_of_left_lung_female_adult_53_years	chr2	230417604	230417649	230417648	+	High_confidence	3	3	12	0.591752	3.584963	chr2	230417018	230417854	LINE|L1|L1ME3G	-	chr2	230416755	230470530	SP100|ENST00000409897.5	+	230416755,230417590,230440475,230442936,230444177,230446818,230449087,230449560,230450171,230461261,230462434,230464066,230466300,230467119,230469042,230470014	230416881,230417665,230440557,230443099,230444346,230446902,230449150,230449710,230450255,230461414,230462518,230464150,230466354,230467215,230469096,230470530	0.916667
upper_lobe_of_left_lung_female_adult_53_years	chr16	29963558	29963578	29963558	+	High_confidence	4	5	15	0.739689	3.506891	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr10	79659995	79659996	79659995	-	RAMPAGE_only	68	82	82	4.043636	5.818064	chr10	79659933	79660018	LINE|L2|L2a	+	chr10	79555851	79560461	SFTPA2|NM_001320813.1	-	79555851,79558051,79558885,79559311,79559968,79560363	79557585,79558129,79559005,79559509,79559998,79560461	0.987805
upper_lobe_of_left_lung_female_adult_53_years	chr12	53464773	53464775	53464774	+	RAMPAGE_only	6	7	10	0.493126	2.947703	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.700000
upper_lobe_of_left_lung_female_adult_53_years	chr4	56657892	56657896	56657895	-	RAMPAGE_only	3	4	7	0.345188	2.521641	chr4	56657736	56657851	SINE|MIR|MIR3	-	chr4	56647997	56656525	HOPX|ENST00000556614.6	-	56647997,56655856,56656343	56648797,56656012,56656525	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr20	45763154	45763199	45763154	-	RAMPAGE_only	11	11	59	2.909445	5.119600	chr20	45759753	45763699	LTR|ERV1|HERVH-int	+	chr20	45705441	45709444	STRG.191207.2	-	45705441	45709444	0.711864
upper_lobe_of_left_lung_female_adult_53_years	chr9	84368691	84368706	84368705	-	High_confidence	3	3	7	0.345188	2.584963	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr20	3795750	3795789	3795788	+	High_confidence	19	20	125	6.164079	6.216890	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795834	3806118	CDC25B|ENST00000245960.9	+	3795834,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806118	0.992000
upper_lobe_of_left_lung_female_adult_53_years	chr13	30376944	30376965	30376964	-	High_confidence	8	10	28	1.380754	4.356558	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30374002	30376964	LINC00426|ENST00000416261.1	-	30374002,30375466,30376826	30374093,30375776,30376964	0.642857
upper_lobe_of_left_lung_female_adult_53_years	chr16	27330079	27330111	27330079	+	RAMPAGE_only	5	5	13	0.641064	3.238901	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27340203	27363903	STRG.169745.5	+	27340203,27342120,27344868,27352539,27358915,27360765,27362251	27340273,27342259,27346618,27355907,27358994,27360815,27363903	0.846154
upper_lobe_of_left_lung_female_adult_53_years	chr17	75087058	75087061	75087058	+	High_confidence	3	3	7	0.345188	2.807355	chr17	75087077	75087353	SINE|Alu|AluSx	+	chr17	75087726	75106162	SLC16A5|ENST00000580123.5	+	75087726,75089150,75093588,75098037,75100006,75103969,75105879	75087896,75089304,75093835,75098181,75100816,75104180,75106162	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr2	48568986	48568988	48568987	+	High_confidence	17	31	34	1.676629	4.359378	chr2	48569019	48569241	SINE|MIR|MIRb	+	chr2	48569019	48679609	STON1-GTF2A1L|NM_172311.2	+	48569019,48580586,48591652,48620850,48621166,48642401,48645032,48646452,48669721,48671590,48679334	48569086,48582563,48591855,48620952,48621290,48642457,48645117,48647042,48669982,48671680,48679609	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr17	59107193	59107215	59107214	+	High_confidence	5	5	19	0.936940	3.892407	chr17	59107089	59107281	DNA|hAT-Charlie|MER5A	-	chr17	59106597	59118267	AC099850.1|ENST00000451775.1	+	59106597,59117923	59107591,59118267	0.842105
upper_lobe_of_left_lung_female_adult_53_years	chr2	237473751	237473761	237473760	+	High_confidence	555	577	881	43.444428	6.641134	chr2	237473374	237473814	LTR|ERVL|LTR33	+	chr2	237473763	237540446	STRG.35540.6	+	237473763,237486266,237487397,237493402,237510573,237510988,237518538,237519909,237525600,237527376,237540347	237474032,237486309,237487437,237493536,237510795,237511101,237518648,237520029,237525805,237527516,237540446	0.820658
upper_lobe_of_left_lung_female_adult_53_years	chr19	5775170	5775184	5775174	+	High_confidence	92	92	228	11.243280	5.599005	chr19	5775110	5775356	LTR|ERVK|LTR3B_	-	chr19	5775241	5778499	CATSPERD|ENST00000448307.1	+	5775241,5776160,5778375	5775289,5776315,5778499	0.859649
upper_lobe_of_left_lung_female_adult_53_years	chr9	77945016	77945044	77945016	-	RAMPAGE_only	7	7	32	1.578004	4.573557	chr9	77944910	77945186	DNA|TcMar-Tigger|Tigger19b	+	chr9	77797527	78030604	GNAQ|ENST00000411677.1	-	77797527,77815615,77922160,78030514	77797648,77815770,77922345,78030604	0.531250
upper_lobe_of_left_lung_female_adult_53_years	chr13	27445105	27445121	27445105	-	RAMPAGE_only	3	3	7	0.345188	2.807355	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr13	43921443	43921495	43921472	+	High_confidence	45	45	141	6.953081	6.385708	chr13	43921366	43921716	LINE|L2|L2c	-	chr13	43921493	44030380	STRG.150192.1	+	43921493,43942422,44022474,44026822	43921679,43942613,44022668,44030380	0.581560
upper_lobe_of_left_lung_female_adult_53_years	chr6	136225622	136225623	136225622	-	High_confidence	8	8	9	0.443814	2.750000	chr6	136225478	136225763	LTR|ERVL-MaLR|THE1B	-	chr6	136094714	136225595	AL138828.1|ENST00000417643.5	-	136094714,136095715,136095993,136096119,136110995,136117069,136162251,136225537	136094779,136095825,136096019,136096288,136111101,136117172,136162348,136225595	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr12	126772237	126772259	126772258	-	High_confidence	7	7	21	1.035565	3.916127	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126730700	126772262	LINC00944|NR_033878.1	-	126730700,126732342,126746260,126747930,126772078	126730803,126732407,126746332,126748127,126772262	0.952381
upper_lobe_of_left_lung_female_adult_53_years	chr6	43391283	43391323	43391322	+	High_confidence	7	8	26	1.282128	4.293661	chr6	43391250	43391384	SINE|Alu|AluSx3	+	chr6	43391146	43397725	STRG.81318.1	+	43391146,43397536	43391734,43397725	0.769231
upper_lobe_of_left_lung_female_adult_53_years	chr1	155954904	155954932	155954904	-	RAMPAGE_only	7	7	17	0.838315	3.690117	chr1	155954717	155954897	LINE|L1|L1ME4b	-	chr1	155947366	155952721	ARHGEF2|ENST00000368315.8	-	155947366,155950298,155950828,155950873,155951482,155951740,155951918,155952115,155952627	155948015,155950482,155950872,155951272,155951533,155951776,155951986,155952235,155952721	0.941176
upper_lobe_of_left_lung_female_adult_53_years	chr19	40926281	40926284	40926281	+	RAMPAGE_only	4	5	8	0.394501	3.000000	chr19	40926161	40926571	LTR|ERVL-MaLR|THE1D	-	chr19	40924272	40949234	STRG.186339.3	+	40924272,40928695,40936391,40938968,40941295,40942064,40944330,40944710,40949052	40926620,40936259,40936541,40939129,40941472,40942206,40944518,40944852,40949234	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr16	726514	726519	726518	+	High_confidence	12	12	30	1.479379	4.735926	chr16	726550	726593	SINE|MIR|MIR1_Amn	+	chr16	726421	728399	STRG.167992.2	+	726421,727411,727964,728115,728315	726887,727614,728029,728233,728399	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr7	87039869	87039870	87039869	-	RAMPAGE_only	10	10	15	0.739689	3.664498	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.866667
upper_lobe_of_left_lung_female_adult_53_years	chr17	76551108	76551129	76551128	-	High_confidence	5	5	11	0.542439	3.121928	chr17	76550828	76551081	SINE|MIR|MIRb	-	chr17	76528533	76551175	CYGB|ENST00000589145.1	-	76528533,76530978,76531459,76550861	76528611,76531142,76531691,76551175	0.818182
upper_lobe_of_left_lung_female_adult_53_years	chr7	100924463	100924527	100924463	+	RAMPAGE_only	7	7	31	1.528692	4.280226	chr7	100922671	100925567	LTR|ERV1|HERVH-int	+	chr7	100942840	100943117	STRG.98216.1	+	100942840	100943117	0.612903
upper_lobe_of_left_lung_female_adult_53_years	chr1	47004182	47004183	47004182	+	High_confidence	92	93	97	4.783325	5.354697	chr1	47003946	47004346	LTR|ERV1|MER51B	+	chr1	47004239	47050754	CYP4X1|NM_001320290.1	+	47004239,47029989,47031435,47033240,47035805,47036016,47038659,47039341,47046466,47048564,47049421,47049999	47004369,47030131,47031480,47033368,47035933,47036171,47038766,47039532,47046600,47048629,47049504,47050754	0.948454
upper_lobe_of_left_lung_female_adult_53_years	chr14	81170392	81170420	81170413	-	High_confidence	8	10	29	1.430066	4.078419	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.896552
upper_lobe_of_left_lung_female_adult_53_years	chr6	169654674	169654699	169654674	-	High_confidence	3	3	8	0.394501	2.521641	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169652968	169654766	STRG.91209.1	-	169652968	169654766	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr5	39134931	39134971	39134970	-	RAMPAGE_only	2	2	9	0.443814	2.947703	chr5	39134954	39135006	SINE|tRNA-RTE|MamSINE1	-	chr5	39107283	39203027	FYB1|ENST00000515010.5	-	39107283,39108230,39110355,39118873,39119534,39122335,39124252,39127740,39130589,39134207,39134854,39137599,39138656,39139232,39141094,39153447,39201825	39107465,39108262,39110389,39119036,39119634,39122402,39124278,39127807,39130612,39134349,39135014,39137720,39138691,39139252,39141141,39153604,39203027	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr10	19749727	19749735	19749734	+	RAMPAGE_only	4	4	8	0.394501	2.807355	chr10	19749477	19750269	LTR|ERVL|MER54B	+	chr10	19816238	20289856	PLXDC2|ENST00000377252.4	+	19816238,20001774,20046868,20068169,20143294,20147783,20164467,20176998,20177327,20211668,20217425,20219063,20245344,20279702	19817191,20001986,20047015,20068239,20143417,20147902,20164567,20177094,20177409,20211729,20217576,20219102,20245505,20289856	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr2	181954491	181954513	181954512	+	High_confidence	24	25	43	2.120443	4.908482	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954530	182117685	PPP1R1C|ENST00000490645.5	+	181954530,181962133,181975218,182061441,182063730,182117206	181954634,181962196,181975264,182061479,182063791,182117685	0.767442
upper_lobe_of_left_lung_female_adult_53_years	chr1	48211163	48211207	48211163	+	High_confidence	11	11	50	2.465632	5.155549	chr1	48210673	48211176	LTR|ERV1|HERVH-int	-	chr1	48211055	48211625	STRG.3660.1	+	48211055	48211625	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chrX	16712889	16712933	16712889	-	High_confidence	6	7	28	1.380754	4.680813	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.964286
upper_lobe_of_left_lung_female_adult_53_years	chr19	39136881	39136923	39136899	+	RAMPAGE_only	9	12	37	1.824567	4.892147	chr19	39136818	39136982	LINE|L2|L2b	-	chr19	39125833	39178610	STRG.186138.2	+	39125833,39168229,39169531,39172917,39173575,39174930,39175311,39176589,39177674,39178423	39125919,39168302,39169757,39173376,39174010,39175064,39175438,39176715,39177809,39178610	0.648649
upper_lobe_of_left_lung_female_adult_53_years	chr1	42480562	42480563	42480562	+	RAMPAGE_only	6	8	8	0.394501	2.750000	chr1	42480468	42480584	SINE|Alu|AluJb	-	chr1	42482655	42654181	CCDC30|ENST00000428554.6	+	42482655,42490157,42497097,42498817,42534888,42536475,42539172,42545409,42556155,42566295,42577019,42581359,42589320,42610977,42637236,42642472,42644692,42646134,42653375,42653817	42482816,42490229,42497213,42498916,42534989,42536601,42539310,42545579,42556405,42566475,42577229,42581514,42589483,42611090,42637378,42642609,42644807,42646317,42653443,42654181	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr2	119695390	119695415	119695402	+	RAMPAGE_only	19	19	48	2.367006	4.289412	chr2	119695338	119695525	LINE|L2|L2c	+	chr2	119701041	119703775	STRG.27028.1	+	119701041,119703619	119701094,119703775	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr16	69996413	69996438	69996437	-	High_confidence	3	3	6	0.295876	2.584963	chr16	69996297	69996477	SINE|MIR|MIRb	+	chr16	69976387	69996188	NPIPB14P|ENST00000532298.5	-	69976387,69978076,69978221,69982349,69982657,69986380,69996068	69976732,69978112,69978282,69982545,69982757,69986509,69996188	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr4	185287290	185287298	185287297	+	RAMPAGE_only	81	94	141	6.953081	5.994976	chr4	185287289	185287386	DNA|hAT-Charlie|MER5B	-	chr4	185210078	185363966	SNX25|ENST00000264694.12	+	185210078,185247293,185258847,185264437,185266968,185288011,185310634,185320732,185323527,185332594,185339378,185341975,185346536,185351444,185353484,185357670,185361923,185362610,185363384	185210255,185247378,185259064,185264610,185267155,185288082,185310816,185320864,185323800,185332759,185339510,185342116,185346650,185351609,185353602,185357737,185362105,185362711,185363966	0.624113
upper_lobe_of_left_lung_female_adult_53_years	chr4	142474407	142474454	142474407	-	High_confidence	55	56	135	6.657205	6.031937	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.866667
upper_lobe_of_left_lung_female_adult_53_years	chr1	21218750	21218751	21218750	-	RAMPAGE_only	11	12	13	0.641064	3.084963	chr1	21218585	21218890	SINE|Alu|AluSx1	-	chr1	21217246	21279690	ECE1|NM_001113347.1	-	21217246,21221746,21225249,21227158,21227930,21233557,21235849,21236745,21238133,21244988,21247220,21255946,21257524,21258692,21260270,21272698,21279190	21220131,21221842,21225440,21227226,21228041,21233661,21235927,21236844,21238244,21245103,21247363,21256138,21257590,21258839,21260392,21272911,21279690	0.923077
upper_lobe_of_left_lung_female_adult_53_years	chr9	38604393	38604408	38604407	-	RAMPAGE_only	3	4	8	0.394501	2.807355	chr9	38604311	38604498	LTR|ERVL-MaLR|MLT1L	+	chr9	38571363	38620363	ANKRD18A|NM_147195.2	-	38571363,38575475,38577052,38577866,38586182,38588550,38593759,38595485,38601130,38603158,38607425,38610272,38611214,38615593,38615929,38620079	38572059,38575698,38577264,38578148,38586312,38588663,38593909,38596403,38601204,38603212,38607493,38610410,38611321,38615767,38616044,38620363	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr5	31530870	31530871	31530870	-	RAMPAGE_only	4	5	7	0.345188	2.584963	chr5	31530667	31530954	LINE|L2|L2c	+	chr5	31400496	31532061	DROSHA|ENST00000511367.6	-	31400496,31405676,31406852,31409055,31409249,31410745,31421271,31422786,31424426,31429474,31431575,31435764,31437238,31448546,31449280,31451532,31464235,31466181,31467938,31472062,31483553,31484880,31486490,31493206,31495285,31504554,31508620,31511034,31514987,31515453,31521122,31526078,31529039,31530797,31531989	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31422944,31424471,31429545,31431678,31435864,31437298,31448607,31449419,31451640,31464343,31466281,31468063,31472232,31483628,31484962,31486562,31493293,31495372,31504635,31508775,31511176,31515219,31515564,31521215,31526912,31529105,31530924,31532061	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr12	49309548	49309596	49309592	-	RAMPAGE_only	9	15	64	3.156008	5.199192	chr12	49309476	49309596	SINE|Alu|AluSz	+	chr12	49292630	49324576	AC125611.4|ENST00000553259.1	-	49292630,49294447,49295259,49296715,49303099,49303805,49324146,49324491	49293896,49294535,49296584,49297706,49303230,49303892,49324339,49324576	0.531250
upper_lobe_of_left_lung_female_adult_53_years	chr11	125895226	125895227	125895226	-	RAMPAGE_only	6	7	7	0.345188	2.584963	chr11	125895047	125895200	SINE|Alu|AluSc8	-	chr11	125893484	125896330	PUS3|ENST00000530811.5	-	125893484,125895223,125895906	125894286,125895789,125896330	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr4	128428040	128428117	128428063	+	High_confidence	6	7	48	2.367006	5.178509	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428069	128519394	AC108062.1|ENST00000511497.5	+	128428069,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519394	0.729167
upper_lobe_of_left_lung_female_adult_53_years	chr7	17374741	17374746	17374741	+	High_confidence	10	12	26	1.282128	4.168296	chr7	17374638	17374768	DNA|hAT-Charlie|MER5B	+	chr7	17374866	17466664	KCCAT333|ENST00000419463.1	+	17374866,17448880,17450994,17466151	17375055,17448948,17451061,17466664	0.807692
upper_lobe_of_left_lung_female_adult_53_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	12	12	15	0.739689	3.664498	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.733333
upper_lobe_of_left_lung_female_adult_53_years	chr4	41359606	41359607	41359606	+	High_confidence	6866	7124	8253	406.977146	6.542819	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.822125
upper_lobe_of_left_lung_female_adult_53_years	chr1	1655477	1655481	1655477	-	RAMPAGE_only	8	8	16	0.789002	3.323231	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.937500
upper_lobe_of_left_lung_female_adult_53_years	chr10	73536334	73536355	73536354	-	RAMPAGE_only	6	8	14	0.690377	3.700440	chr10	73536351	73536426	LINE|L1|L1PBa	+	chr10	73497537	73534770	USP54|ENST00000466048.6	-	73497537,73500654,73504849,73505307,73516374,73520907,73523582,73526646,73529679,73530142,73534599	73499188,73500838,73504990,73505426,73517747,73521027,73523750,73526780,73529911,73530523,73534770	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr6	44126632	44126633	44126632	+	High_confidence	6	6	6	0.295876	2.584963	chr6	44126578	44126686	LINE|CR1|X7A_LINE	-	chr6	44126913	44155519	TMEM63B|NM_001318792.1	+	44126913,44134560,44135016,44135327,44136348,44138479,44139466,44139707,44140251,44141027,44146846,44147376,44148251,44148512,44148791,44149858,44150223,44150563,44151845,44152592,44153675,44154072,44154364,44154691	44127072,44134743,44135096,44135366,44136439,44138517,44139609,44139759,44140360,44141098,44146927,44147500,44148385,44148650,44148945,44149965,44150310,44150629,44152008,44152698,44153843,44154188,44154445,44155519	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr10	79611493	79611535	79611493	+	High_confidence	13	15	36	1.775255	4.947703	chr10	79611409	79611573	SINE|MIR|MIR3	-	chr10	79610954	79613840	SFTPA1|ENST00000439264.1	+	79610954,79611318,79611802,79612311,79613188,79613736	79610982,79611389,79611997,79612431,79613266,79613840	0.805556
upper_lobe_of_left_lung_female_adult_53_years	chr7	101217578	101217595	101217578	-	High_confidence	13	13	36	1.775255	4.910992	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.944444
upper_lobe_of_left_lung_female_adult_53_years	chr15	57516588	57516615	57516614	+	RAMPAGE_only	8	9	31	1.528692	4.513153	chr15	57516656	57516717	SINE|MIR|MIR	+	chr15	57420813	57550727	STRG.163726.5	+	57420813,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57421250,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.903226
upper_lobe_of_left_lung_female_adult_53_years	chr1	156232400	156232424	156232423	+	RAMPAGE_only	3	3	6	0.295876	2.584963	chr1	156232451	156232560	LINE|L2|L2c	+	chr1	156213025	156239718	PMF1|ENST00000497069.2	+	156213025,156225556,156232319,156233627,156236287,156239547	156213176,156225668,156232425,156233728,156236483,156239718	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr8	38753075	38753076	38753075	+	RAMPAGE_only	4	5	7	0.345188	2.584963	chr8	38752749	38753095	LTR|ERVL|LTR84b	-	chr8	38728343	38769408	STRG.104772.20	+	38728343,38744894	38742451,38769408	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr15	93863018	93863066	93863065	+	High_confidence	9	9	29	1.430066	4.532665	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.862069
upper_lobe_of_left_lung_female_adult_53_years	chr17	28637853	28637854	28637853	-	RAMPAGE_only	4	4	7	0.345188	2.521641	chr17	28637660	28637803	SINE|Alu|AluSx3	-	chr17	28614439	28645131	KIAA0100|ENST00000528896.6	-	28614439,28615663,28616095,28616378,28616617,28616888,28617231,28618790,28619653,28619859,28620508,28620987,28621398,28623759,28624232,28628264,28631478,28631819,28632048,28632941,28633282,28633548,28633894,28634516,28636964,28637835,28638251,28638523,28639314,28639574,28639900,28640559,28641888,28642274,28642868,28643163,28643609,28644057,28644988	28615246,28615798,28616197,28616509,28616753,28616999,28617318,28618971,28619775,28620015,28620630,28621170,28621498,28623966,28624390,28628559,28631681,28631919,28632239,28633162,28633401,28633751,28634086,28635609,28637170,28638094,28638415,28638642,28639460,28639642,28640025,28640683,28642078,28642335,28642987,28643311,28643659,28644187,28645131	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr1	184590788	184590802	184590801	+	RAMPAGE_only	5	6	11	0.542439	2.913977	chr1	184590844	184591183	DNA|TcMar-Tigger|MER2B	+	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr12	8697193	8697216	8697195	+	High_confidence	8	15	31	1.528692	4.556088	chr12	8697043	8697239	SINE|MIR|MIRc	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.741935
upper_lobe_of_left_lung_female_adult_53_years	chr3	155664978	155665008	155664994	-	RAMPAGE_only	7	7	21	1.035565	3.684184	chr3	155664915	155665290	LTR|ERVL-MaLR|MLT1J2	+	chr3	155514616	155667724	STRG.49924.5	-	155514616,155523896,155549786,155554075,155564914,155568230,155583471,155586064,155593940,155596231,155664948	155514884,155524004,155549958,155554196,155565118,155568324,155583642,155586194,155594184,155596378,155667724	0.952381
upper_lobe_of_left_lung_female_adult_53_years	chr14	50756715	50756742	50756741	-	RAMPAGE_only	6	6	10	0.493126	3.321928	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr7	11194708	11194724	11194708	+	RAMPAGE_only	5	10	20	0.986253	3.621928	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.800000
upper_lobe_of_left_lung_female_adult_53_years	chr7	2242922	2242923	2242922	+	High_confidence	9	9	10	0.493126	2.947703	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr11	77175226	77175303	77175226	+	High_confidence	16	16	54	2.662882	5.132487	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr20	1467679	1467700	1467699	-	High_confidence	51	54	106	5.227139	5.084743	chr20	1467673	1468159	LTR|ERV1|LTR10B	+	chr20	1442161	1467692	NSFL1C|ENST00000216879.8	-	1442161,1445665,1452492,1453030,1454212,1454966,1458199,1464328,1466719	1443911,1445830,1452630,1453140,1454305,1455132,1458274,1464426,1467692	0.990566
upper_lobe_of_left_lung_female_adult_53_years	chr3	183123434	183123538	183123483	-	RAMPAGE_only	13	14	78	3.846385	5.178807	chr3	183123276	183123575	SINE|Alu|AluSq2	+	chr3	183122214	183162879	LAMP3|NM_014398.3	-	183122214,183135716,183140537,183152374,183153681,183162606	183124214,183135887,183140595,183152503,183154391,183162879	0.987179
upper_lobe_of_left_lung_female_adult_53_years	chr10	88234617	88234651	88234650	+	High_confidence	87	89	178	8.777648	4.990003	chr10	88234610	88234927	LINE|L2|L2c	-	chr10	88234598	88277884	STRG.125535.1	+	88234598,88249568	88249522,88277884	0.938202
upper_lobe_of_left_lung_female_adult_53_years	chr15	37984611	37984626	37984611	+	High_confidence	12	12	29	1.430066	4.487123	chr15	37984547	37984681	LTR|ERVL-MaLR|MLT1A0	+	chr15	37984743	38044676	STRG.161885.1	+	37984743,37993401,38020191,38024680,38039995,38044573	37984835,37993486,38020532,38024901,38040429,38044676	0.793103
upper_lobe_of_left_lung_female_adult_53_years	chr1	176162874	176162896	176162895	-	RAMPAGE_only	4	5	9	0.443814	2.750000	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr2	36513735	36513760	36513756	+	High_confidence	10	11	31	1.528692	4.415061	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.903226
upper_lobe_of_left_lung_female_adult_53_years	chr19	40926523	40926530	40926523	+	RAMPAGE_only	4	4	8	0.394501	2.807355	chr19	40926161	40926571	LTR|ERVL-MaLR|THE1D	-	chr19	40924272	40949234	STRG.186339.3	+	40924272,40928695,40936391,40938968,40941295,40942064,40944330,40944710,40949052	40926620,40936259,40936541,40939129,40941472,40942206,40944518,40944852,40949234	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr2	201167128	201167248	201167247	+	High_confidence	19	22	120	5.917516	5.874955	chr2	201167231	201167526	SINE|Alu|AluJo	+	chr2	201166964	201167546	AC007283.1|ENST00000434645.1	+	201166964,201167409	201167272,201167546	0.550000
upper_lobe_of_left_lung_female_adult_53_years	chr18	39800304	39800317	39800315	-	High_confidence	3	6	11	0.542439	3.459432	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.636364
upper_lobe_of_left_lung_female_adult_53_years	chr8	3893653	3893658	3893653	-	RAMPAGE_only	3	3	9	0.443814	2.750000	chr8	3893641	3894245	LTR|ERV1|LTR43	+	chr8	2935353	4032100	CSMD1|ENST00000537824.2	-	2935353,2942471,2949298,2950230,2951113,2954223,2955588,2957695,2961140,2962465,2963221,2965774,2966569,2973116,2974450,2978611,2998010,2999957,3018476,3029318,3052461,3087096,3091515,3096848,3106527,3107717,3108602,3110157,3118398,3142464,3151396,3157896,3162158,3181109,3187868,3188886,3189911,3199713,3201611,3205503,3214496,3219254,3223728,3230039,3284143,3307694,3308311,3343293,3347991,3359151,3367031,3369253,3387493,3396193,3399390,3406026,3407898,3409422,3468711,3493622,3574944,3586135,3616709,3708413,3753929,3949955,3997902,4031904	2938744,2942604,2949386,2950343,2951275,2954268,2955768,2957807,2961214,2962639,2963395,2965954,2966746,2973299,2974624,2978800,2998184,3000131,3018650,3029513,3052647,3087285,3091662,3097037,3106641,3107798,3108748,3110335,3118587,3142674,3151513,3157966,3162277,3181214,3187965,3189011,3190115,3199809,3201725,3205620,3214691,3219442,3223867,3230231,3284346,3307821,3308503,3343450,3348161,3359340,3367247,3369370,3387682,3396381,3399529,3406221,3408225,3409605,3468824,3493726,3575066,3586260,3616797,3708491,3754038,3949959,3998110,4032100	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr11	65429022	65429306	65429305	+	RAMPAGE_only	45	45	373	18.393611	6.110960	chr11	65428987	65429477	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.991957
upper_lobe_of_left_lung_female_adult_53_years	chr7	107580245	107580267	107580245	+	High_confidence	447	451	2224	109.671292	7.270876	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.930306
upper_lobe_of_left_lung_female_adult_53_years	chr2	39453855	39453868	39453855	+	RAMPAGE_only	2	2	7	0.345188	2.521641	chr2	39453626	39453953	SINE|Alu|AluJo	-	chr2	39437430	39474758	AC007388.1|ENST00000445520.5	+	39437430,39453838,39454296,39474526	39437535,39453931,39454365,39474758	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr22	24011756	24011757	24011756	+	High_confidence	11	11	11	0.542439	3.277613	chr22	24011632	24011858	SINE|MIR|MIRb	-	chr22	24011417	24178628	CABIN1|ENST00000398319.6	+	24011417,24035443,24036088,24038347,24041138,24042903,24049090,24050824,24054872,24056191,24059226,24059923,24061946,24062958,24064034,24066986,24070799,24072353,24076168,24083227,24084578,24085005,24087451,24091582,24095930,24098013,24113565,24119366,24134301,24164399,24165529,24166638,24168446,24171712,24176110,24177503,24178052	24011728,24035520,24036181,24038461,24041273,24043084,24049220,24050974,24055159,24056360,24059363,24060141,24062025,24063146,24064187,24067181,24071042,24072510,24076284,24083389,24084785,24085151,24087713,24091843,24096082,24098192,24113748,24119698,24134415,24164563,24165626,24167313,24168521,24171995,24176275,24177817,24178628	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr5	131316026	131316084	131316083	+	RAMPAGE_only	5	5	18	0.887627	3.969816	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131264099	131394667	CDC42SE2|ENST00000505065.1	+	131264099,131315975,131359208,131385542,131390992	131264166,131316144,131359547,131385644,131394667	0.944444
upper_lobe_of_left_lung_female_adult_53_years	chr3	195688578	195688587	195688578	+	High_confidence	2	2	7	0.345188	2.584963	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688520	195708807	MUC20-OT1|ENST00000630417.2	+	195688520,195689338,195699029,195708133,195708746	195688797,195689438,195699207,195708435,195708807	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr15	33194708	33194715	33194708	-	High_confidence	10	10	20	0.986253	3.921928	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr5	95509599	95509600	95509599	-	RAMPAGE_only	5	5	7	0.345188	2.521641	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95463894	95522086	STRG.71092.3	-	95463894,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522086	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr19	35899295	35899345	35899344	-	High_confidence	6	6	14	0.690377	3.664498	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35887951	35899737	NFKBID|NM_001321831.1	-	35887951,35889889,35890373,35895979,35896217,35896391,35896725,35896912,35897650,35898471,35898718,35899706	35888612,35890054,35890490,35896128,35896269,35896538,35896831,35897103,35897838,35898532,35898822,35899737	0.928571
upper_lobe_of_left_lung_female_adult_53_years	chr6	131325816	131325866	131325835	-	RAMPAGE_only	13	14	48	2.367006	4.902569	chr6	131323748	131326796	LTR|ERV1|HERVH-int	+	chr6	131247397	131326925	STRG.87792.2	-	131247397,131283892,131284784,131324733	131283835,131284741,131296766,131326925	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr3	187796169	187796226	187796225	+	High_confidence	5	7	33	1.627317	4.091135	chr3	187796208	187796275	SINE|MIR|MIR	+	chr3	187796254	187805137	AC108681.1|ENST00000417384.1	+	187796254,187804216,187804827	187796363,187804386,187805137	0.727273
upper_lobe_of_left_lung_female_adult_53_years	chr1	8464503	8464573	8464542	-	RAMPAGE_only	11	13	69	3.402572	5.241731	chr1	8464286	8464828	LINE|L2|L2a	+	chr1	8364055	8425212	RERE|ENST00000488215.5	-	8364055,8364745,8365811,8422726,8424787	8364255,8364838,8365974,8422807,8425212	0.884058
upper_lobe_of_left_lung_female_adult_53_years	chr3	117471975	117471998	117471997	-	RAMPAGE_only	6	8	16	0.789002	3.906891	chr3	117471790	117472002	LINE|L1|L1ME3A	-	chr3	117337381	117352406	STRG.45250.1	-	117337381,117349050,117352353	117339787,117349220,117352406	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr19	47289917	47289918	47289917	+	High_confidence	14	14	16	0.789002	3.577820	chr19	47289949	47290265	LINE|L1|L1M1	+	chr19	47289926	47297803	STRG.187009.3	+	47289926,47291977,47296599	47290061,47292173,47297803	0.812500
upper_lobe_of_left_lung_female_adult_53_years	chr5	65988667	65988674	65988673	+	High_confidence	4	5	8	0.394501	2.500000	chr5	65988722	65989005	SINE|Alu|AluJb	+	chr5	65988632	66078936	ERBIN|ENST00000508515.1	+	65988632,65992709,65994746,66012048,66013548,66014668,66021321,66023289,66024305,66025479,66025847,66026301,66028273,66038382,66043076,66044136,66046352,66048666,66050782,66053405,66076315,66076874,66078422	65988682,65992907,65994864,66012127,66013638,66014725,66021385,66023364,66024450,66025552,66025977,66026417,66028343,66038482,66043198,66044310,66046538,66048781,66050966,66054951,66076408,66076949,66078936	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr9	128684459	128684483	128684459	-	High_confidence	21	21	80	3.945010	5.792837	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683718	128684469	STRG.119695.1	-	128683718	128684469	0.662500
upper_lobe_of_left_lung_female_adult_53_years	chr8	102929989	102930000	102929989	+	High_confidence	5	5	18	0.887627	3.969816	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr10	103890267	103890286	103890285	-	High_confidence	9	9	21	1.035565	4.070656	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103890677	STRG.126718.7	-	103882554,103889071,103889998	103882841,103889144,103890677	0.952381
upper_lobe_of_left_lung_female_adult_53_years	chr7	7484227	7484253	7484252	-	RAMPAGE_only	7	7	20	0.986253	3.821928	chr7	7483997	7484719	LINE|L1|L1MEd	+	chr7	7417631	7520073	COL28A1|ENST00000444268.1	-	7417631,7419884,7432472,7432631,7436394,7437393,7440789,7443584,7444417,7452318,7453439,7456043,7474600,7477111,7489388,7490577,7506013,7507116,7511090,7511651,7515813,7517795,7520061	7417927,7419953,7432541,7432700,7436463,7437462,7440861,7443653,7444489,7452387,7453508,7456112,7474669,7477180,7489457,7490646,7506067,7507161,7511135,7511844,7515840,7517837,7520073	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr8	12565883	12565884	12565883	+	RAMPAGE_only	8	8	11	0.542439	3.121928	chr8	12565799	12565977	LTR|ERVK|HERVK-int	+	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.818182
upper_lobe_of_left_lung_female_adult_53_years	chr2	75569716	75569722	75569716	-	High_confidence	5	5	24	1.183503	4.418296	chr2	75569550	75569879	LINE|L2|L2b	+	chr2	75518057	75569698	EVA1A|ENST00000486696.1	-	75518057,75522364,75526111,75569475	75518208,75522487,75526199,75569698	0.583333
upper_lobe_of_left_lung_female_adult_53_years	chr9	33539955	33539970	33539955	+	RAMPAGE_only	4	5	14	0.690377	3.521641	chr9	33539865	33540052	LTR|ERVL-MaLR|MLT1L	-	chr9	33536927	33558237	STRG.113487.1	+	33536927,33541146,33543184,33547937,33550429,33555707,33558057	33536945,33541227,33543255,33548855,33550579,33555820,33558237	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr19	41268090	41268103	41268090	+	High_confidence	2	2	8	0.394501	2.750000	chr19	41267950	41268100	LINE|L2|L2c	+	chr19	41268077	41272206	HNRNPUL1|ENST00000595336.1	+	41268077,41272081	41268345,41272206	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr2	100192419	100192428	100192419	-	High_confidence	389	399	605	29.834142	7.414499	chr2	100192079	100192499	LTR|ERVL-MaLR|MLT1L	-	chr2	100007336	100192417	STRG.25935.3	-	100007336,100008811,100104401,100105503,100112385,100129223,100142483,100192141	100007460,100008932,100104518,100105583,100112524,100129306,100142595,100192417	0.813223
upper_lobe_of_left_lung_female_adult_53_years	chr18	9588114	9588181	9588180	-	RAMPAGE_only	4	4	22	1.084878	4.095795	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9577063	9595061	PPP4R1|ENST00000580583.5	-	9577063,9584514,9584720,9588088,9588710,9593767,9595017	9577191,9584580,9584828,9588235,9588853,9593874,9595061	0.636364
upper_lobe_of_left_lung_female_adult_53_years	chr10	62259162	62259166	62259165	+	RAMPAGE_only	4	4	8	0.394501	3.000000	chr10	62258971	62259329	LTR|ERVL-MaLR|THE1B	+	chr10	62374156	62402458	ZNF365|NM_014951.2	+	62374156,62376180,62388395,62398739,62399527	62374458,62376936,62388576,62398777,62402458	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr2	182030747	182030784	182030773	+	High_confidence	8	8	34	1.676629	4.432620	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.941176
upper_lobe_of_left_lung_female_adult_53_years	chr4	184382440	184382441	184382440	-	High_confidence	4	4	6	0.295876	2.584963	chr4	184382179	184382738	LTR|ERVL|LTR67B	+	chr4	184372406	184382306	LINC02362|ENST00000608785.1	-	184372406,184376440,184378964,184382133	184372480,184376544,184379129,184382306	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr2	100192248	100192317	100192308	-	High_confidence	4	4	18	0.887627	3.852169	chr2	100192079	100192499	LTR|ERVL-MaLR|MLT1L	-	chr2	100007336	100192417	STRG.25935.3	-	100007336,100008811,100104401,100105503,100112385,100129223,100142483,100192141	100007460,100008932,100104518,100105583,100112524,100129306,100142595,100192417	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr12	40366504	40366555	40366504	+	RAMPAGE_only	6	6	14	0.690377	3.664498	chr12	40366064	40366553	LINE|L2|L2b	+	chr12	40298465	40369285	LRRK2|ENST00000479187.5	+	40298465,40299108,40302788,40303947,40305784,40308466,40309105,40310430,40313971,40315211,40319987,40321033,40322034,40322318,40323159,40328359,40334966,40340293,40346752,40348408,40351538,40354298,40356114,40359259,40363401,40364841	40298493,40299257,40302882,40304134,40305966,40308696,40309233,40310649,40314173,40315300,40320175,40321188,40322181,40322510,40323306,40328460,40335157,40340454,40346923,40348509,40351733,40354492,40356187,40359444,40363554,40369285	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr15	78996031	78996036	78996031	-	RAMPAGE_only	11	11	22	1.084878	3.884184	chr15	78995966	78996151	LINE|L2|L2b	+	chr15	78959861	78998071	STRG.165929.1	-	78959861,78971865,78973302,78980619,78985006,78990188,78991690,78995739,78997950	78962236,78971934,78973420,78980699,78985204,78990273,78991794,78995800,78998071	0.636364
upper_lobe_of_left_lung_female_adult_53_years	chr12	56157338	56157349	56157341	+	High_confidence	6	6	19	0.936940	3.503258	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.842105
upper_lobe_of_left_lung_female_adult_53_years	chr16	10444425	10444452	10444451	-	RAMPAGE_only	3	4	7	0.345188	2.584963	chr16	10443659	10445502	LTR|ERV1|HERVIP10B3-int	-	chr16	10439985	10498350	STRG.168731.4	-	10439985,10444075,10444317,10470655,10481387	10441844,10444200,10470590,10481351,10498350	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr9	92536601	92536602	92536601	-	High_confidence	10	10	10	0.493126	3.121928	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr8	143558019	143558020	143558019	+	High_confidence	16	16	16	0.789002	3.625000	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.937500
upper_lobe_of_left_lung_female_adult_53_years	chr11	71999607	71999642	71999641	+	High_confidence	6	6	29	1.430066	4.582119	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999616	72002526	IL18BP|ENST00000260049.9	+	71999616,71999926,72000350,72001200,72001404,72001783	71999662,72000012,72000557,72001324,72001552,72002526	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr16	8842153	8842179	8842153	+	High_confidence	17	17	35	1.725942	3.633154	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr3	193506779	193506780	193506779	+	RAMPAGE_only	187	187	191	9.418713	6.299011	chr3	193506586	193506961	LTR|ERVL-MaLR|THE1C	+	chr3	193539640	193555508	STRG.52977.2	+	193539640,193554769	193540090,193555508	0.780105
upper_lobe_of_left_lung_female_adult_53_years	chr3	119458450	119458464	119458450	-	RAMPAGE_only	2	2	6	0.295876	2.584963	chr3	119458304	119458612	LINE|L2|L2	+	chr3	119446641	119462008	TMEM39A|ENST00000486235.5	-	119446641,119452446,119458017,119461961	119447172,119452530,119458240,119462008	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr21	41430577	41430586	41430585	+	RAMPAGE_only	3	4	7	0.345188	2.584963	chr21	41429929	41430715	DNA|hAT-Charlie|Charlie2b	+	chr21	41431713	41459214	MX1|ENST00000288383.10	+	41431713,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41432175,41435960,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chrX	71198186	71198196	71198195	-	High_confidence	10	10	24	1.183503	3.879664	chrX	71198068	71198187	SINE|MIR|MIR3	-	chrX	71183558	71198175	AL590764.1|ENST00000450860.1	-	71183558,71197908	71184017,71198175	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr7	99410146	99410162	99410146	+	High_confidence	12	13	19	0.936940	3.836592	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.736842
upper_lobe_of_left_lung_female_adult_53_years	chr17	67920067	67920136	67920135	+	High_confidence	3	3	15	0.739689	3.773557	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr17	59729704	59729734	59729733	+	High_confidence	5	5	18	0.887627	4.058814	chr17	59729673	59729983	SINE|Alu|AluSq2	-	chr17	59729714	59737517	VMP1|ENST00000587259.5	+	59729714,59731420,59735337,59737452	59730017,59731522,59735473,59737517	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr7	101308269	101308325	101308324	+	High_confidence	6	6	26	1.282128	4.026987	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr2	219730121	219730129	219730128	+	RAMPAGE_only	15	15	26	1.282128	4.363713	chr2	219729861	219730382	LINE|L1|L1ME1	-	chr2	219685491	219737937	AC009502.1|ENST00000606673.1	+	219685491,219737453	219685609,219737937	0.769231
upper_lobe_of_left_lung_female_adult_53_years	chr5	74765422	74765436	74765426	+	RAMPAGE_only	5	8	25	1.232816	4.168296	chr5	74765248	74765602	LINE|L2|L2a	-	chr5	74766990	74776912	NSA2|NM_014886.4	+	74766990,74768930,74769213,74770630,74773867,74776603	74767363,74769118,74769364,74770810,74774060,74776912	0.960000
upper_lobe_of_left_lung_female_adult_53_years	chr1	228949873	228949879	228949873	-	High_confidence	13	18	25	1.232816	3.863465	chr1	228949769	228950272	LTR|ERV1|HERVH-int	+	chr1	228891521	228949767	STRG.17262.1	-	228891521,228948620,228949581	228891664,228948733,228949767	0.600000
upper_lobe_of_left_lung_female_adult_53_years	chr20	3873786	3873812	3873811	+	RAMPAGE_only	8	10	31	1.528692	4.254196	chr20	3873828	3874352	LINE|L1|L1ME3A	+	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.870968
upper_lobe_of_left_lung_female_adult_53_years	chr8	13277075	13277092	13277085	-	High_confidence	9	9	29	1.430066	3.624519	chr8	13277041	13277334	SINE|Alu|AluJr	+	chr8	13100605	13276873	DLC1|ENST00000503161.6	-	13100605,13102789,13110741,13115585,13276694	13100770,13102853,13110823,13115657,13276873	0.965517
upper_lobe_of_left_lung_female_adult_53_years	chr5	32403105	32403172	32403115	-	RAMPAGE_only	10	10	53	2.613569	5.501505	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr2	160195415	160195451	160195450	-	RAMPAGE_only	6	6	16	0.789002	3.773557	chr2	160195366	160195442	LINE|CR1|L3	-	chr2	160101635	160200252	ITGB6|ENST00000428609.6	-	160101635,160107678,160112079,160123790,160126378,160137433,160138064,160141981,160169211,160172568,160173973,160195368,160196215,160200002	160101834,160107845,160112199,160123888,160126601,160137851,160138199,160142071,160169307,160172730,160174139,160195615,160196420,160200252	0.687500
upper_lobe_of_left_lung_female_adult_53_years	chr2	42097690	42097731	42097730	-	RAMPAGE_only	2	2	6	0.295876	2.584963	chr2	42097527	42097943	LINE|L2|L2c	+	chr2	42083692	42113631	STRG.21813.1	-	42083692,42113453	42084020,42113631	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr12	111873	111884	111875	-	High_confidence	98	174	328	16.174543	6.677691	chr12	110820	111833	LTR|ERV1|HERVP71A-int	-	chr12	106523	111850	AC026369.3|ENST00000540226.1	-	106523,111618	106877,111850	0.786585
upper_lobe_of_left_lung_female_adult_53_years	chr7	99210279	99210295	99210294	-	High_confidence	6	6	13	0.641064	3.584963	chr7	99210034	99210321	LINE|L2|L2b	+	chr7	99195085	99210294	STRG.97898.1	-	99195085,99203105,99207400,99210214	99195338,99203240,99207489,99210294	0.538462
upper_lobe_of_left_lung_female_adult_53_years	chr2	55618850	55618889	55618850	-	High_confidence	8	11	26	1.282128	4.251629	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.884615
upper_lobe_of_left_lung_female_adult_53_years	chr19	55280199	55280227	55280218	-	High_confidence	10	15	37	1.824567	3.671582	chr19	55280119	55280184	DNA|hAT-Ac|OldhAT1	-	chr19	55262352	55280177	HSPBP1|ENST00000433386.6	-	55262352,55265277,55265885,55266130,55274397,55277641,55279398,55280034	55262682,55265389,55265982,55266286,55274622,55277846,55279702,55280177	0.945946
upper_lobe_of_left_lung_female_adult_53_years	chr9	82887253	82887296	82887256	-	High_confidence	40	44	108	5.325764	5.010714	chr9	82887143	82887293	LTR|ERV1|HERVH-int	+	chr9	82886299	82887190	STRG.115756.1	-	82886299	82887190	0.990741
upper_lobe_of_left_lung_female_adult_53_years	chr19	40926132	40926240	40926215	+	RAMPAGE_only	8	8	49	2.416319	4.466942	chr19	40926161	40926571	LTR|ERVL-MaLR|THE1D	-	chr19	40924272	40949234	STRG.186339.3	+	40924272,40928695,40936391,40938968,40941295,40942064,40944330,40944710,40949052	40926620,40936259,40936541,40939129,40941472,40942206,40944518,40944852,40949234	0.897959
upper_lobe_of_left_lung_female_adult_53_years	chr7	17483439	17483523	17483522	-	RAMPAGE_only	3	3	20	0.986253	4.121928	chr7	17483475	17483796	DNA|TcMar-Tigger|MER44A	+	chr7	17405478	17524175	AC019117.1|ENST00000636929.1	-	17405478,17456681,17457458,17459724,17460481,17463097,17463399,17465169,17482526,17483405,17524096	17405628,17456762,17457589,17459919,17460553,17463266,17463542,17465226,17482782,17483534,17524175	0.700000
upper_lobe_of_left_lung_female_adult_53_years	chr16	10444319	10444357	10444356	-	RAMPAGE_only	2	2	8	0.394501	2.807355	chr16	10443659	10445502	LTR|ERV1|HERVIP10B3-int	-	chr16	10439985	10498350	STRG.168731.4	-	10439985,10444075,10444317,10470655,10481387	10441844,10444200,10470590,10481351,10498350	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr7	104926606	104926641	104926626	-	High_confidence	27	29	75	3.698447	5.462161	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104911915	104926630	LHFPL3-AS2|ENST00000453666.2	-	104911915,104915705,104917559,104920384,104926452	104912076,104915827,104917980,104920425,104926630	0.773333
upper_lobe_of_left_lung_female_adult_53_years	chr7	131503951	131504041	131504040	-	RAMPAGE_only	35	44	182	8.974899	4.795736	chr7	131503890	131504051	SINE|MIR|MIR3	+	chr7	131500261	131556563	PODXL|ENST00000446198.5	-	131500261,131505867,131506259,131506578,131508950,131510827,131556259	131504508,131506035,131506321,131506726,131509585,131511433,131556563	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr9	121207778	121207803	121207793	+	High_confidence	6	6	21	1.035565	3.821928	chr9	121207755	121207923	SINE|Alu|AluJb	-	chr9	121207793	121265186	GSN|ENST00000434663.5	+	121207793,121209295,121210235,121210783,121231164,121265153	121207897,121209397,121210329,121210867,121231303,121265186	0.761905
upper_lobe_of_left_lung_female_adult_53_years	chr2	73072182	73072231	73072200	-	High_confidence	2	2	10	0.493126	3.121928	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr4	75127183	75127262	75127261	-	RAMPAGE_only	10	11	53	2.613569	5.004061	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.849057
upper_lobe_of_left_lung_female_adult_53_years	chr4	87445311	87445327	87445311	+	RAMPAGE_only	3	3	9	0.443814	2.947703	chr4	87445285	87445338	DNA|TcMar-Tigger|Tigger3b	+	chr4	87441870	87454456	NUDT9|ENST00000515371.1	+	87441870,87445321,87449141,87451588,87454370	87441915,87445507,87449253,87451735,87454456	0.555556
upper_lobe_of_left_lung_female_adult_53_years	chr17	41628695	41628710	41628695	-	High_confidence	5	5	9	0.443814	3.000000	chr17	41628668	41628794	LINE|L2|L2c	+	chr17	41627949	41628766	KRT42P|ENST00000587335.1	-	41627949,41628354	41628106,41628766	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr16	15006394	15006398	15006397	+	RAMPAGE_only	3	5	7	0.345188	2.521641	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chrX	73837439	73837465	73837450	-	RAMPAGE_only	23	23	62	3.057383	4.085537	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.983871
upper_lobe_of_left_lung_female_adult_53_years	chr17	1648266	1648294	1648293	-	High_confidence	3	4	7	0.345188	2.584963	chr17	1648093	1648307	LINE|L2|L2b	+	chr17	1646192	1648846	RILP|ENST00000570858.5	-	1646192,1646905,1647834,1648349	1646619,1646989,1647957,1648846	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr22	41940217	41940222	41940221	-	High_confidence	15	15	31	1.528692	4.348394	chr22	41939903	41940386	LINE|L2|L2a	+	chr22	41938720	41940219	CENPM|NM_001110215.2	-	41938720,41940138	41939196,41940219	0.741935
upper_lobe_of_left_lung_female_adult_53_years	chr10	119579165	119579166	119579165	-	High_confidence	6	6	8	0.394501	2.750000	chr10	119579075	119579340	SINE|Alu|AluSz	+	chr10	119577474	119578940	TIAL1|ENST00000495821.1	-	119577474,119577640,119578725	119577535,119577736,119578940	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr6	11394759	11394785	11394759	-	High_confidence	9	9	25	1.232816	4.213661	chr6	11394349	11394840	LTR|ERVL-MaLR|MLT1L	-	chr6	11394442	11394818	STRG.78247.1	-	11394442	11394818	0.880000
upper_lobe_of_left_lung_female_adult_53_years	chr3	32463644	32463753	32463644	+	RAMPAGE_only	15	19	108	5.325764	5.762084	chr3	32463604	32463752	LTR|ERV1|HERVH-int	-	chr3	32461567	32464176	STRG.39094.1	+	32461567	32464176	0.898148
upper_lobe_of_left_lung_female_adult_53_years	chr6	113873326	113873347	113873346	-	High_confidence	11	11	46	2.268381	4.525385	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.913043
upper_lobe_of_left_lung_female_adult_53_years	chr10	120980805	120980832	120980805	-	RAMPAGE_only	21	23	46	2.268381	4.230433	chr10	120980711	120980892	DNA|hAT-Charlie|MER113	+	chr10	120883468	120914342	STRG.127924.1	-	120883468	120914342	0.869565
upper_lobe_of_left_lung_female_adult_53_years	chr9	186002	186005	186002	-	RAMPAGE_only	2	2	6	0.295876	2.584963	chr9	185804	186030	LTR|ERVL-MaLR|MLT1A1	-	chr9	121040	179147	CBWD1|ENST00000377400.8	-	121040,121960,123216,123385,134978,146101,152033,154708,156480,162431,163977,172080,173269,175697,178815	121573,122090,123282,123454,135030,146158,152078,154795,156527,162469,164037,172172,173366,175784,179147	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr15	55457578	55457606	55457605	-	RAMPAGE_only	3	3	7	0.345188	2.807355	chr15	55456476	55458791	LINE|L1|L1PB1	+	chr15	55410524	55498341	DNAAF4|ENST00000524160.5	-	55410524,55411108,55432496,55434904,55439471,55450221,55491122,55497711,55498206	55410843,55411155,55432602,55435058,55439581,55450367,55491256,55497859,55498341	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr4	177445009	177445016	177445009	+	High_confidence	7	7	12	0.591752	3.277613	chr4	177444910	177445732	LTR|ERV1|LTR1A2	+	chr4	177444978	177677126	AC078881.1|ENST00000507023.1	+	177444978,177451474,177593471,177596460,177623658,177675836	177445443,177451590,177593546,177596531,177623802,177677126	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr16	10531271	10531278	10531271	-	RAMPAGE_only	17	22	33	1.627317	4.518397	chr16	10530980	10531270	SINE|Alu|AluSx1	-	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.939394
upper_lobe_of_left_lung_female_adult_53_years	chr2	100192198	100192218	100192217	-	High_confidence	4	5	9	0.443814	2.750000	chr2	100192079	100192499	LTR|ERVL-MaLR|MLT1L	-	chr2	100007336	100192417	STRG.25935.3	-	100007336,100008811,100104401,100105503,100112385,100129223,100142483,100192141	100007460,100008932,100104518,100105583,100112524,100129306,100142595,100192417	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr6	31186398	31186533	31186398	-	High_confidence	58	62	132	6.509267	6.305879	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31182016	31186544	STRG.80182.1	-	31182016	31186544	0.984848
upper_lobe_of_left_lung_female_adult_53_years	chr4	9568920	9568945	9568920	-	RAMPAGE_only	3	3	12	0.591752	3.277613	chr4	9568768	9569224	LTR|ERVK|HERVK-int	-	chr4	9568059	9570300	STRG.54209.1	-	9568059	9570300	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr6	133350564	133350574	133350573	+	RAMPAGE_only	3	3	8	0.394501	2.807355	chr6	133350173	133350647	LINE|L2|L2a	-	chr6	133325210	133468569	EYA4|ENST00000421413.6	+	133325210,133382391,133446629,133456555,133461113,133462363,133462620,133464778,133468565	133325414,133382441,133446754,133456648,133461180,133462477,133462764,133464858,133468569	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr7	6590345	6590350	6590345	+	High_confidence	2	2	8	0.394501	2.807355	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr19	14407169	14407200	14407193	+	RAMPAGE_only	4	4	12	0.591752	3.418296	chr19	14407237	14407386	SINE|Alu|AluJo	+	chr19	14397732	14408721	STRG.184286.4	+	14397732,14397888,14398061,14401385,14401652,14402596,14404382,14405747,14406330,14406699,14406868,14407907,14408091	14397804,14397935,14398139,14401563,14401760,14402862,14404562,14405939,14406557,14406766,14407229,14408009,14408721	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr16	30445873	30445877	30445873	-	High_confidence	50	74	109	5.375077	5.619284	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.990826
upper_lobe_of_left_lung_female_adult_53_years	chr8	116648847	116648905	116648847	-	RAMPAGE_only	12	12	61	3.008071	4.914767	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.983607
upper_lobe_of_left_lung_female_adult_53_years	chr19	40944220	40944274	40944220	+	High_confidence	2	2	18	0.887627	3.616875	chr19	40943967	40944282	SINE|Alu|AluSz6	-	chr19	40944142	40949345	CYP2B7P|ENST00000600518.2	+	40944142,40944710,40949052	40944518,40944852,40949345	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr16	28608315	28608336	28608315	-	High_confidence	4	4	8	0.394501	2.500000	chr16	28608009	28608286	SINE|Alu|AluSp	-	chr16	28605195	28608920	SULT1A1|ENST00000569554.5	-	28605195,28606055,28606760,28606950,28608290,28608477,28608707	28605933,28606236,28606855,28607077,28608388,28608603,28608920	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr11	64242523	64242547	64242546	+	High_confidence	19	19	39	1.923193	4.875146	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr14	55671844	55671872	55671858	+	High_confidence	7	9	34	1.676629	4.289833	chr14	55671902	55672073	DNA|hAT-Charlie|MER5A	+	chr14	55671314	55684579	KTN1|ENST00000556631.1	+	55671314,55678351,55679564,55684098	55675918,55678444,55679685,55684579	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr3	138594027	138594035	138594027	-	High_confidence	5	6	14	0.690377	3.546594	chr3	138593850	138594045	SINE|MIR|MIRb	-	chr3	138572858	138594129	CEP70|ENST00000485115.1	-	138572858,138591853,138593708	138572932,138591956,138594129	0.785714
upper_lobe_of_left_lung_female_adult_53_years	chr16	28952161	28952200	28952199	+	RAMPAGE_only	4	4	13	0.641064	3.546594	chr16	28952153	28952214	DNA|hAT-Ac|OldhAT1	+	chr16	28950996	28966465	NFATC2IP|NM_032815.3	+	28950996,28952131,28954564,28955977,28956150,28958716,28958990,28963704	28951398,28952204,28954682,28956058,28956337,28958861,28959100,28966465	0.692308
upper_lobe_of_left_lung_female_adult_53_years	chr16	65053820	65053866	65053820	-	RAMPAGE_only	2	2	12	0.591752	3.095795	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr10	3780920	3780979	3780949	-	RAMPAGE_only	9	13	41	2.021818	4.165312	chr10	3780909	3781012	LINE|CR1|L3b	+	chr10	3780326	3785193	KLF6|ENST00000469435.1	-	3780326,3784912	3782214,3785193	0.780488
upper_lobe_of_left_lung_female_adult_53_years	chr18	47920114	47920115	47920114	-	RAMPAGE_only	4	4	7	0.345188	2.584963	chr18	47919993	47920302	LTR|ERVL-MaLR|MLT1A0	-	chr18	47808956	47930559	SMAD2|ENST00000262160.10	-	47808956,47845339,47845662,47848474,47851273,47865058,47868322,47869242,47870474,47896520,47930360	47841950,47845484,47845800,47848687,47851327,47865133,47868457,47869436,47870564,47896809,47930559	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr8	18666128	18666167	18666164	-	RAMPAGE_only	2	2	13	0.641064	3.418296	chr8	18666060	18666349	SINE|Alu|AluSx	-	chr8	18530709	18683932	PSD3|ENST00000615573.4	-	18530709,18556208,18557487,18600363,18632612,18655641,18683773	18535958,18556331,18557490,18600434,18632806,18655685,18683932	0.846154
upper_lobe_of_left_lung_female_adult_53_years	chr5	160187371	160187410	160187409	+	High_confidence	6	6	56	2.761507	5.104646	chr5	160187374	160187670	LINE|L2|L2b	-	chr5	160187392	160235011	STRG.76317.1	+	160187392,160199048,160213735,160229545,160232097,160234819	160187454,160199157,160213819,160229624,160232273,160235011	0.946429
upper_lobe_of_left_lung_female_adult_53_years	chr2	179719985	179720013	179719996	-	RAMPAGE_only	2	2	8	0.394501	2.807355	chr2	179719764	179720145	LTR|ERVL?|LTR87	+	chr2	179718465	179746042	STRG.31467.16	-	179718465,179728236,179730125	179720094,179730098,179746042	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr11	47508817	47508844	47508843	-	RAMPAGE_only	2	3	7	0.345188	2.521641	chr11	47508783	47509069	SINE|Alu|AluSq2	-	chr11	47487191	47499763	CELF1|ENST00000535982.1	-	47487191,47488836,47499452	47487241,47489024,47499763	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr17	63691826	63691840	63691839	+	RAMPAGE_only	2	3	11	0.542439	3.277613	chr17	63691879	63692027	SINE|MIR|MIRc	+	chr17	63622709	63693874	MAP3K3|ENST00000577395.5	+	63622709,63632680,63646033,63652556,63657793,63666939,63681765,63685516,63688526,63688788,63689543,63690263,63691101,63691732,63692241,63693548	63622763,63632802,63646074,63652656,63657907,63667060,63681899,63685578,63688594,63688881,63689735,63690412,63691233,63691862,63692419,63693874	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr6	43391229	43391248	43391247	+	High_confidence	3	3	7	0.345188	2.584963	chr6	43391250	43391384	SINE|Alu|AluSx3	+	chr6	43391146	43397725	STRG.81318.1	+	43391146,43397536	43391734,43397725	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr6	44126249	44126274	44126258	-	High_confidence	7	7	20	0.986253	4.037401	chr6	44126165	44126303	DNA|hAT-Charlie|MER112	-	chr6	44113453	44126267	MRPL14|NM_001318770.1	-	44113453,44116540,44125952	44114209,44116629,44126267	0.700000
upper_lobe_of_left_lung_female_adult_53_years	chr12	24909664	24909689	24909688	-	RAMPAGE_only	3	3	6	0.295876	2.584963	chr12	24909448	24909699	LTR|ERVL-MaLR|MLT1C	-	chr12	24810023	24903075	BCAT1|NM_001178093.1	-	24810023,24829822,24832722,24836510,24842081,24849785,24878529,24881300,24894274,24901813,24902946	24818049,24829897,24832863,24836596,24842224,24849949,24878649,24881411,24894475,24901885,24903075	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr4	88595585	88595612	88595611	+	RAMPAGE_only	2	2	7	0.345188	2.807355	chr4	88595552	88595664	SINE|MIR|MIR3	+	chr4	88593377	88653088	HERC3|ENST00000452979.5	+	88593377,88595556,88605794,88649839,88652011,88652868	88593494,88595614,88606049,88649999,88652088,88653088	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr3	188886260	188886297	188886296	+	RAMPAGE_only	8	8	23	1.134191	4.055958	chr3	188885956	188886311	LINE|L1|L1PA3	+	chr3	188225404	188890671	LPP|ENST00000617246.4	+	188225404,188341662,188406111,188484591,188524664,188609160,188708266,188760112,188866199,188872642,188874350	188225527,188341719,188406313,188484704,188524787,188609844,188708393,188760282,188866378,188872763,188890671	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr14	55123935	55123936	55123935	+	RAMPAGE_only	4	4	6	0.295876	2.584963	chr14	55123866	55124149	LTR|ERVL-MaLR|MLT1O	-	chr14	55129043	55145403	LGALS3|ENST00000254301.13	+	55129043,55137369,55138044,55140274,55142583,55145115	55129300,55137391,55138368,55140363,55142749,55145403	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr6	31587194	31587252	31587201	+	High_confidence	13	16	39	1.923193	4.631305	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.974359
upper_lobe_of_left_lung_female_adult_53_years	chr1	183590893	183590914	183590910	-	High_confidence	7	7	21	1.035565	4.142664	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555561	183590921	NCF2|NM_001127651.2	-	183555561,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590921	0.619048
upper_lobe_of_left_lung_female_adult_53_years	chrX	94701001	94701045	94701044	+	High_confidence	191	191	1024	50.496134	7.018418	chrX	94701008	94701158	LTR|ERV1|HERVH-int	-	chrX	94700902	94934289	STRG.204128.1	+	94700902,94702050,94746874,94915658	94701955,94702166,94746970,94934289	0.898438
upper_lobe_of_left_lung_female_adult_53_years	chr16	66398530	66398543	66398542	+	RAMPAGE_only	5	5	9	0.443814	2.500000	chr16	66398585	66398746	SINE|Alu|AluJo	+	chr16	66395454	66403335	CDH5|ENST00000539168.1	+	66395454,66396058,66397981,66398455,66400770,66402651	66395822,66396201,66398106,66398561,66401016,66403335	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr6	130222941	130222953	130222941	-	High_confidence	2	2	8	0.394501	2.521641	chr6	130222811	130222944	DNA|hAT-Charlie|MER102a	+	chr6	130144301	130222954	SAMD3|NM_001017373.3	-	130144301,130145339,130146009,130154824,130175840,130184102,130184437,130209494,130214336,130215194,130216570,130222693	130144804,130145422,130146181,130155025,130176008,130184187,130184623,130209608,130214526,130215294,130216616,130222954	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr12	123390725	123390761	123390725	+	High_confidence	9	9	28	1.380754	4.532665	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.892857
upper_lobe_of_left_lung_female_adult_53_years	chr3	50584549	50584573	50584549	+	RAMPAGE_only	2	2	10	0.493126	2.947703	chr3	50584333	50584805	LTR|ERVL-MaLR|MLT1D	+	chr3	50579451	50595965	STRG.40853.4	+	50579451,50579843,50580115,50580380,50581392,50582080	50579740,50579939,50580229,50581053,50581674,50595965	0.800000
upper_lobe_of_left_lung_female_adult_53_years	chr10	102449836	102449845	102449844	+	High_confidence	21	22	78	3.846385	5.602898	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449843	102456281	STRG.126971.1	+	102449843,102451398,102452089,102455336	102450330,102451555,102452187,102456281	0.961538
upper_lobe_of_left_lung_female_adult_53_years	chr15	37984733	37984761	37984739	+	High_confidence	56	56	254	12.525408	6.848550	chr15	37984710	37984905	LTR|ERVL-MaLR|MLT1A0	+	chr15	37984743	38044676	STRG.161885.1	+	37984743,37993401,38020191,38024680,38039995,38044573	37984835,37993486,38020532,38024901,38040429,38044676	0.712598
upper_lobe_of_left_lung_female_adult_53_years	chr3	9192492	9192539	9192492	+	High_confidence	129	132	204	10.059777	6.413305	chr3	9192123	9192754	LTR|ERVL|MER77	+	chr3	9192492	9194453	LOC101927416|NR_121663.1	+	9192492,9193428,9193725	9192995,9193490,9194453	0.941176
upper_lobe_of_left_lung_female_adult_53_years	chr10	34973954	34973978	34973977	+	High_confidence	3	3	14	0.690377	3.700440	chr10	34969226	34975145	LTR|ERV1|HERVE-int	+	chr10	34973983	34975576	AL392046.2|ENST00000635301.1	+	34973983,34974193,34974657	34974088,34974282,34975576	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr16	19393734	19393735	19393734	-	High_confidence	192	193	211	10.404965	5.611702	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19363529	19393913	STRG.169319.4	-	19363529,19381429,19393375	19379011,19381674,19393913	0.853081
upper_lobe_of_left_lung_female_adult_53_years	chr1	51403428	51403433	51403432	-	High_confidence	9	9	19	0.936940	3.681881	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51357484	51403223	STRG.4320.5	-	51357484,51365952,51394380,51399031,51400917,51402434	51364028,51366029,51394447,51399165,51400953,51403223	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr18	54945425	54945444	54945443	-	RAMPAGE_only	3	3	8	0.394501	2.807355	chr18	54945305	54945474	SINE|MIR|MIRc	-	chr18	54901510	54942950	CCDC68|ENST00000432185.5	-	54901510,54907785,54917912,54919270,54928799,54934819,54936832,54937956,54940996,54942674	54904415,54907862,54917996,54919376,54928882,54934948,54936958,54938097,54941083,54942950	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr18	9593981	9594000	9593981	-	RAMPAGE_only	5	5	9	0.443814	2.725481	chr18	9593938	9594229	SINE|Alu|AluJb	-	chr18	9561982	9614513	STRG.179516.3	-	9561982,9562921,9570156,9584514,9584720,9588088,9588710,9595017,9614225,9614477	9562075,9563550,9583275,9584580,9584828,9588235,9593874,9595102,9614270,9614513	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr6	117401102	117401144	117401143	-	RAMPAGE_only	2	3	9	0.443814	3.000000	chr6	117400617	117401443	LINE|L2|L2a	+	chr6	117326127	117425855	STRG.86332.7	-	117326127,117329328,117337171,117342399,117344059,117352989,117356628,117357803,117359808,117360341,117362602,117365059,117365580,117366075,117379058,117383316,117384585,117393223,117394615,117404279,117409581,117414518,117416257,117418461,117425533	117328813,117329446,117337340,117342544,117344262,117353169,117356915,117358009,117360011,117360405,117362865,117365204,117365741,117366293,117379159,117383508,117389846,117394346,117403277,117404428,117409642,117414545,117416317,117418506,117425855	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr6	25107139	25107140	25107139	-	RAMPAGE_only	6	6	7	0.345188	2.584963	chr6	25107071	25107568	LINE|L2|L2a	-	chr6	25081569	25108682	STRG.79540.9	-	25081569,25084479,25091895,25093513,25097060,25106358	25081879,25086899,25092012,25093688,25097201,25108682	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr6	131325594	131325620	131325619	-	RAMPAGE_only	3	3	11	0.542439	3.121928	chr6	131323748	131326796	LTR|ERV1|HERVH-int	+	chr6	131247397	131326925	STRG.87792.2	-	131247397,131283892,131284784,131324733	131283835,131284741,131296766,131326925	0.727273
upper_lobe_of_left_lung_female_adult_53_years	chr12	8681676	8681677	8681676	+	RAMPAGE_only	36	36	49	2.416319	5.376629	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8697921	8777191	RIMKLB|ENST00000357529.7	+	8697921,8699784,8713810,8749861,8751956,8753889,8773320	8698297,8700614,8714041,8750092,8752043,8754093,8777191	0.510204
upper_lobe_of_left_lung_female_adult_53_years	chr1	157898282	157898283	157898282	-	High_confidence	22	22	23	1.134191	4.277613	chr1	157898124	157898479	LTR|ERVL-MaLR|THE1A	-	chr1	157834049	157898261	STRG.10896.1	-	157834049,157835834,157839383,157898199	157834748,157836155,157839410,157898261	0.608696
upper_lobe_of_left_lung_female_adult_53_years	chr9	129495813	129495820	129495819	+	RAMPAGE_only	4	6	10	0.493126	2.725481	chr9	129495725	129495901	SINE|MIR|MIRc	-	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr10	100381230	100381260	100381230	+	RAMPAGE_only	3	3	9	0.443814	3.169925	chr10	100380919	100381305	LTR|ERV1|LTR7B	+	chr10	100373614	100388360	STRG.126685.1	+	100373614,100381215,100388036	100374012,100381448,100388360	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr9	7103839	7103840	7103839	+	RAMPAGE_only	4	5	7	0.345188	2.584963	chr9	7103879	7104109	LINE|L2|L2b	+	chr9	6925500	7175347	KDM4C|ENST00000428870.6	+	6925500,6980924,6984165,6986343,6990415,7011697,7013787,7015852,7046861,7049091,7103684,7128065,7165237,7169797,7174552	6925671,6981118,6984404,6986666,6990524,7011879,7014001,7015929,7046917,7049200,7103870,7128236,7165357,7169890,7175347	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr2	218287279	218287306	218287279	-	High_confidence	8	8	31	1.528692	4.487123	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.838710
upper_lobe_of_left_lung_female_adult_53_years	chr15	34588450	34588453	34588452	-	High_confidence	10	17	22	1.084878	4.061482	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.681818
upper_lobe_of_left_lung_female_adult_53_years	chr5	173746164	173746177	173746164	-	High_confidence	2	3	6	0.295876	2.584963	chr5	173745880	173746596	LTR|ERV1|MER4A	+	chr5	173719245	173746211	LINC01484|ENST00000518902.1	-	173719245,173746019	173719543,173746211	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr16	29154315	29154319	29154315	+	High_confidence	6	7	12	0.591752	3.459432	chr16	29154014	29154324	LINE|L1|L1MD2	+	chr16	29153988	29154885	STRG.170002.1	+	29153988	29154885	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr10	91414628	91414634	91414628	+	RAMPAGE_only	3	3	8	0.394501	2.750000	chr10	91414422	91414860	LINE|L2|L2c	-	chr10	91410344	91514761	HECTD2|ENST00000298068.9	+	91410344,91425280,91460426,91461253,91462094,91478200,91481093,91482966,91484506,91485179,91487681,91491199,91492351,91493419,91496213,91498107,91498871,91499043,91500501,91501190,91512263	91410576,91425410,91460565,91461356,91462184,91478265,91481139,91483076,91484655,91485303,91487778,91491307,91492484,91493508,91496372,91498182,91498959,91499150,91500617,91501334,91514761	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr8	12522810	12522821	12522810	+	RAMPAGE_only	137	137	340	16.766295	6.439381	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.658824
upper_lobe_of_left_lung_female_adult_53_years	chr12	12635948	12635974	12635973	+	RAMPAGE_only	3	3	6	0.295876	2.584963	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr3	33838239	33838293	33838256	+	RAMPAGE_only	19	19	49	2.416319	4.865635	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.795918
upper_lobe_of_left_lung_female_adult_53_years	chr6	33346045	33346046	33346045	+	High_confidence	7	7	7	0.345188	2.807355	chr6	33345909	33347070	LTR|ERV1|HERVH-int	+	chr6	33345576	33351846	STRG.80421.1	+	33345576,33351467	33346376,33351846	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr15	55514631	55514652	55514631	-	High_confidence	37	45	104	5.128514	5.594499	chr15	55513405	55516274	LTR|ERV1|HERVE_a-int	-	chr15	55512490	55514904	STRG.163492.1	-	55512490,55514518	55514413,55514904	0.932692
upper_lobe_of_left_lung_female_adult_53_years	chr2	110780697	110780727	110780697	+	RAMPAGE_only	6	7	13	0.641064	3.584963	chr2	110779462	110780748	LINE|L1|L1ME2	+	chr2	110732633	110888017	ACOXL|ENST00000340561.8	+	110732633,110768367,110784731,110793649,110794075,110798609,110799013,110801651,110805262,110841370,110886780	110732774,110768464,110784815,110793736,110794174,110798724,110799100,110801724,110805395,110841405,110888017	0.538462
upper_lobe_of_left_lung_female_adult_53_years	chr1	30756619	30756703	30756676	-	High_confidence	8	9	43	2.120443	4.164296	chr1	30756372	30756636	SINE|MIR|MIR	-	chr1	30732468	30757162	STRG.1830.2	-	30732468,30735172,30737603,30738939,30739808,30741639,30742455,30756395	30733917,30735265,30737699,30739062,30739937,30741716,30742549,30757162	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr9	97188710	97188726	97188710	-	High_confidence	4	4	8	0.394501	2.750000	chr9	97188625	97188759	LTR|ERVL-MaLR|MLT1L	+	chr9	97188440	97188758	STRG.116914.1	-	97188440	97188758	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr6	28354199	28354206	28354205	-	High_confidence	23	24	42	2.071131	5.249460	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.619048
upper_lobe_of_left_lung_female_adult_53_years	chr3	193457010	193457021	193457010	-	RAMPAGE_only	5	5	9	0.443814	2.750000	chr3	193456740	193456970	LINE|L2|L2c	-	chr3	193402077	193467348	ATP13A4|ENST00000428352.5	-	193402077,193407312,193410981,193412177,193414578,193433844,193435675,193438474,193439022,193440557,193441465,193442392,193448205,193454100,193456999,193457378,193459080,193462761,193464939,193466024,193467315	193402864,193407393,193411070,193412371,193414750,193433917,193435744,193438584,193439065,193440637,193441588,193442556,193448330,193454212,193457153,193457465,193459231,193462823,193465128,193466182,193467348	0.555556
upper_lobe_of_left_lung_female_adult_53_years	chr18	36122242	36122249	36122242	-	High_confidence	3	3	7	0.345188	2.584963	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr19	13306863	13306902	13306901	+	High_confidence	3	4	12	0.591752	3.418296	chr19	13306545	13306965	LTR|ERVL|MER74A	+	chr19	13306901	13308738	STRG.184234.1	+	13306901,13307147	13306950,13308738	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr4	1241361	1241362	1241361	-	RAMPAGE_only	4	5	7	0.345188	2.521641	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1248740	CTBP1|ENST00000513420.1	-	1225437,1228198,1238182,1241324,1248660	1225566,1228343,1238337,1241519,1248740	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chrX	73841948	73841962	73841948	-	High_confidence	2	3	12	0.591752	2.845351	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.916667
upper_lobe_of_left_lung_female_adult_53_years	chr19	45450734	45450766	45450739	-	High_confidence	7	9	40	1.972505	5.121928	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr2	203015508	203015519	203015508	+	High_confidence	4	4	14	0.690377	3.180833	chr2	203015479	203015763	SINE|Alu|AluSx1	-	chr2	203015790	203041857	NBEAL1|ENST00000492870.1	+	203015790,203016155,203041764	203015864,203016427,203041857	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr12	79542148	79542219	79542148	+	High_confidence	20	21	62	3.057383	5.284684	chr12	79540300	79543266	LTR|ERV1|HERVH-int	+	chr12	79542205	79550346	AC027288.1|ENST00000551032.5	+	79542205,79546065,79550108	79542410,79546176,79550346	0.935484
upper_lobe_of_left_lung_female_adult_53_years	chr2	3536839	3536885	3536845	-	High_confidence	5	5	22	1.084878	4.321928	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3533223	3536869	AC108488.1|ENST00000438482.1	-	3533223,3534112,3536723	3533848,3534255,3536869	0.545455
upper_lobe_of_left_lung_female_adult_53_years	chr3	187862887	187862900	187862899	-	RAMPAGE_only	4	4	9	0.443814	3.169925	chr3	187862480	187868516	LINE|L1|L1PA2	+	chr3	187835751	187836027	STRG.52537.1	-	187835751	187836027	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr1	77129077	77129078	77129077	+	High_confidence	46	52	54	2.662882	5.216233	chr1	77128993	77129084	DNA|hAT-Charlie|MER58B	+	chr1	77129113	77129668	AC113935.1|ENST00000471722.1	+	77129113	77129668	0.907407
upper_lobe_of_left_lung_female_adult_53_years	chr7	100349734	100349767	100349766	+	RAMPAGE_only	3	3	6	0.295876	2.584963	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100343420	100351144	STRG.98156.7	+	100343420	100351144	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr4	4269605	4269614	4269609	-	High_confidence	17	18	45	2.219068	3.986354	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267711	4269873	STRG.53786.3	-	4267711,4268529,4269428	4268023,4268615,4269873	0.933333
upper_lobe_of_left_lung_female_adult_53_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	15	19	21	1.035565	4.037401	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.809524
upper_lobe_of_left_lung_female_adult_53_years	chr19	38753101	38753158	38753114	-	High_confidence	53	53	178	8.777648	5.226310	chr19	38753007	38753155	LTR|ERV1|HERVH-int	+	chr19	38752331	38753107	STRG.186106.1	-	38752331	38753107	0.983146
upper_lobe_of_left_lung_female_adult_53_years	chr7	106020417	106020418	106020417	+	RAMPAGE_only	10	10	15	0.739689	2.789898	chr7	106020355	106020483	LINE|CR1|L3	-	chr7	106015123	106022448	CDHR3|ENST00000468477.1	+	106015123,106020372,106022197	106015182,106020544,106022448	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr7	775156	775157	775156	+	RAMPAGE_only	4	4	6	0.295876	2.584963	chr7	775198	775267	DNA|TcMar-Tigger|MER2B	+	chr7	768474	786044	DNAAF5|ENST00000403952.3	+	768474,770470,774047,775005,779952,785516	769205,770618,774198,775162,780144,786044	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr11	117185950	117186013	117185994	+	High_confidence	13	13	78	3.846385	5.795817	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.897436
upper_lobe_of_left_lung_female_adult_53_years	chr2	233357066	233357067	233357066	+	RAMPAGE_only	11	11	17	0.838315	3.852169	chr2	233356905	233357200	LTR|ERVL|LTR33A_	-	chr2	233354509	233434899	STRG.35336.8	+	233354509,233388256,233390402,233434379,233434768	233354674,233388367,233390483,233434484,233434899	0.588235
upper_lobe_of_left_lung_female_adult_53_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	6	6	6	0.295876	2.584963	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr6	79631256	79631329	79631302	+	High_confidence	107	107	480	23.670063	6.641624	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.972917
upper_lobe_of_left_lung_female_adult_53_years	chr21	42484857	42484865	42484857	-	RAMPAGE_only	5	5	10	0.493126	2.947703	chr21	42484841	42485085	DNA|TcMar-Tigger|MamRep434	-	chr21	42472485	42496246	RSPH1|ENST00000493019.1	-	42472485,42475897,42477290,42482636,42484676,42492757,42492965,42496132	42472870,42476047,42477444,42482708,42486461,42492863,42493079,42496246	0.600000
upper_lobe_of_left_lung_female_adult_53_years	chr16	2759957	2759975	2759974	+	High_confidence	8	9	24	1.183503	4.136842	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.541667
upper_lobe_of_left_lung_female_adult_53_years	chr3	75502947	75502963	75502959	+	High_confidence	31	57	141	6.953081	5.750978	chr3	75502089	75503728	LTR|ERV1|HERVS71-int	-	chr3	75502960	75503772	STRG.42742.1	+	75502960	75503772	0.709220
upper_lobe_of_left_lung_female_adult_53_years	chr21	46256844	46256893	46256892	-	High_confidence	4	5	13	0.641064	3.188722	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.769231
upper_lobe_of_left_lung_female_adult_53_years	chr6	30493061	30493186	30493088	+	RAMPAGE_only	12	17	155	7.643458	5.264925	chr6	30493011	30493324	SINE|Alu|AluSc8	+	chr6	30489466	30494205	HLA-E|ENST00000376630.4	+	30489466,30489725,30490239,30491136,30491536,30492403,30492540,30492748	30489595,30489995,30490515,30491412,30491653,30492436,30492583,30494205	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr22	30611060	30611061	30611060	+	RAMPAGE_only	6	6	6	0.295876	2.584963	chr22	30611097	30611237	SINE|MIR|MIR3	+	chr22	30607203	30627060	TCN2|ENST00000407817.3	+	30607203,30610870,30612872,30614348,30615300,30615600,30617329,30622967,30626459	30607395,30611063,30612961,30614501,30615473,30615787,30617495,30623083,30627060	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr17	31993982	31993994	31993993	+	High_confidence	10	10	17	0.838315	3.452820	chr17	31994036	31994094	LINE|L1|L1MA2	+	chr17	31994352	31999376	SUZ12|ENST00000578106.1	+	31994352,31995563,31996797,31998657	31994721,31995762,31996877,31999376	0.941176
upper_lobe_of_left_lung_female_adult_53_years	chr15	90467508	90467512	90467511	+	RAMPAGE_only	3	3	7	0.345188	2.807355	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr10	46269606	46269610	46269606	-	High_confidence	6	7	14	0.690377	3.664498	chr10	46269529	46269872	LTR|ERVK|LTR14A	+	chr10	46219024	46269608	ANTXRLP1|NR_103827.1	-	46219024,46248890,46254020,46263509,46269381	46219706,46248971,46254096,46263608,46269608	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr6	43013306	43013393	43013392	-	High_confidence	7	7	46	2.268381	4.735200	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr17	6853915	6853950	6853928	+	High_confidence	19	19	62	3.057383	5.728390	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6892588	STRG.173386.2	+	6853929,6854213,6892002	6854060,6854435,6892588	0.903226
upper_lobe_of_left_lung_female_adult_53_years	chr22	41653674	41653675	41653674	+	RAMPAGE_only	4	4	7	0.345188	2.807355	chr22	41653710	41653849	DNA|hAT-Charlie|MER5A	+	chr22	41656952	41661699	XRCC6|ENST00000478914.1	+	41656952,41658251,41661330	41657032,41658352,41661699	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr4	184855611	184855650	184855649	-	High_confidence	6	6	27	1.331441	4.469670	chr4	184855538	184855766	LTR|ERVL-MaLR|MLT1J1	-	chr4	184843295	184855652	MIR3945HG|NR_132989.1	-	184843295,184850494,184855468	184844925,184850599,184855652	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr1	24193383	24193384	24193383	+	High_confidence	5	6	8	0.394501	3.000000	chr1	24193203	24193390	LTR|ERVL-MaLR|MLT1K	-	chr1	24193403	24193857	STRG.1556.1	+	24193403	24193857	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr9	62897430	62897431	62897430	+	High_confidence	8	8	11	0.542439	3.095795	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.727273
upper_lobe_of_left_lung_female_adult_53_years	chr2	229232040	229232054	229232040	-	High_confidence	6	7	31	1.528692	4.681728	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.580645
upper_lobe_of_left_lung_female_adult_53_years	chr22	18149865	18149869	18149865	+	High_confidence	6	6	13	0.641064	2.603158	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.923077
upper_lobe_of_left_lung_female_adult_53_years	chr16	19393876	19393894	19393876	-	High_confidence	299	306	473	23.324875	5.776867	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19363529	19393913	STRG.169319.4	-	19363529,19381429,19393375	19379011,19381674,19393913	0.966173
upper_lobe_of_left_lung_female_adult_53_years	chr21	34512319	34512320	34512319	-	High_confidence	6	7	8	0.394501	3.000000	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34446687	34512275	KCNE1|NM_000219.5	-	34446687,34458653,34511100,34512026	34449684,34458764,34511315,34512275	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr3	125937004	125937025	125937014	-	High_confidence	2	2	8	0.394501	2.521641	chr3	125936638	125942696	LINE|L1|L1PA2	+	chr3	125929274	125937039	ALG1L|ENST00000340333.7	-	125929274,125930556,125931637,125932649,125933574,125936897	125929567,125930629,125931752,125932709,125933696,125937039	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr22	39021125	39021156	39021155	+	High_confidence	9	9	32	1.578004	3.989898	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.906250
upper_lobe_of_left_lung_female_adult_53_years	chr19	9140393	9140428	9140393	+	High_confidence	33	33	95	4.684700	5.998679	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.726316
upper_lobe_of_left_lung_female_adult_53_years	chr10	79446839	79446869	79446868	-	RAMPAGE_only	7	7	12	0.591752	2.855389	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.916667
upper_lobe_of_left_lung_female_adult_53_years	chr18	80148048	80148049	80148048	+	High_confidence	45	45	49	2.416319	5.152569	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr19	51795150	51795187	51795150	+	High_confidence	3	3	19	0.936940	3.932138	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795145	51826190	FPR3|NM_002030.4	+	51795145,51823738	51795331,51826190	0.894737
upper_lobe_of_left_lung_female_adult_53_years	chr22	21940680	21940685	21940680	-	High_confidence	12	12	19	0.936940	3.681881	chr22	21940485	21940733	LTR|ERVL-MaLR|MLT1C	+	chr22	21931265	21940657	PPM1F|ENST00000445205.1	-	21931265,21933390,21934023,21939531,21940574	21931291,21933579,21934226,21939680,21940657	0.842105
upper_lobe_of_left_lung_female_adult_53_years	chr3	183683128	183683145	183683144	+	RAMPAGE_only	19	19	47	2.317694	4.341724	chr3	183682928	183683231	SINE|Alu|AluSx3	-	chr3	183635622	183684519	KLHL24|NM_017644.3	+	183635622,183643479,183650295,183663457,183664920,183671033,183672295,183679085	183635793,183643542,183651276,183663642,183665039,183671222,183672484,183684519	0.978723
upper_lobe_of_left_lung_female_adult_53_years	chr14	53217889	53217897	53217896	+	High_confidence	3	3	9	0.443814	2.750000	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217890	53369501	AL365295.1|ENST00000435322.1	+	53217890,53304807,53318030,53369454	53218055,53305053,53318138,53369501	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr2	55228153	55228159	55228158	-	RAMPAGE_only	6	7	14	0.690377	3.334679	chr2	55228053	55228212	LINE|L2|L2c	+	chr2	55222271	55224398	CLHC1|ENST00000403506.1	-	55222271,55224190	55222493,55224398	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr12	118139096	118139097	118139096	+	High_confidence	8	8	8	0.394501	2.750000	chr12	118139032	118139331	SINE|Alu|AluSg7	+	chr12	118139016	118145109	PEBP1|ENST00000542939.1	+	118139016,118139450,118144585	118139099,118139551,118145109	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr15	80059918	80059933	80059918	+	High_confidence	29	31	58	2.860133	5.452640	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.982759
upper_lobe_of_left_lung_female_adult_53_years	chr5	109952014	109952030	109952029	+	High_confidence	4	4	13	0.641064	3.084963	chr5	109951861	109952212	LTR|ERVL-MaLR|MLT1A0	+	chr5	109952041	109952398	STRG.72093.1	+	109952041	109952398	0.615385
upper_lobe_of_left_lung_female_adult_53_years	chr17	4143196	4143215	4143199	+	High_confidence	43	45	99	4.881950	5.725309	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.979798
upper_lobe_of_left_lung_female_adult_53_years	chr3	50452213	50452227	50452226	-	RAMPAGE_only	8	8	20	0.986253	3.721928	chr3	50451978	50452366	LTR|ERVL|LTR16	+	chr3	50362798	50503423	CACNA2D2|ENST00000423994.6	-	50362798,50364887,50365074,50365355,50365632,50365809,50366010,50366266,50366577,50366830,50367010,50367393,50367641,50367811,50368137,50370319,50373064,50374736,50375643,50375808,50375962,50376113,50377466,50377731,50378007,50378283,50378914,50379091,50379431,50379724,50379967,50380747,50380994,50384195,50387567,50394108,50434312,50476117,50503217	50364806,50364976,50365184,50365482,50365688,50365862,50366163,50366338,50366628,50366919,50367109,50367497,50367704,50367902,50368235,50370380,50373085,50374813,50375705,50375880,50376034,50376188,50377541,50377803,50378097,50378333,50378993,50379199,50379590,50379824,50380018,50380805,50381126,50384337,50387612,50394168,50434429,50476199,50503423	0.850000
upper_lobe_of_left_lung_female_adult_53_years	chr12	16382873	16382905	16382873	+	High_confidence	13	13	32	1.578004	4.562500	chr12	16377145	16383292	LINE|L1|L1PA4	-	chr12	16382826	16438761	MGST1|ENST00000359720.3	+	16382826,16437387	16383604,16438761	0.968750
upper_lobe_of_left_lung_female_adult_53_years	chr8	47360804	47360848	47360804	+	High_confidence	11	11	38	1.873880	4.158637	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47440397	SPIDR|ENST00000521918.6	+	47360818,47396375,47407860,47440322	47360949,47396626,47407961,47440397	0.921053
upper_lobe_of_left_lung_female_adult_53_years	chr6	52984906	52984931	52984930	-	RAMPAGE_only	4	4	8	0.394501	2.807355	chr6	52984918	52985026	SINE|MIR|MIRb	-	chr6	52977947	52988002	GSTA4|ENST00000486559.5	-	52977947,52982573,52984463,52985450,52987356	52978592,52982705,52984605,52985583,52988002	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr21	42955786	42955834	42955802	-	High_confidence	7	7	30	1.479379	4.323231	chr21	42955408	42955905	LTR|ERV1|HERVE-int	-	chr21	42955422	42955744	STRG.194920.1	-	42955422	42955744	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr3	114624984	114625007	114625006	-	High_confidence	6	6	18	0.887627	3.572469	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr3	132285531	132285558	132285557	-	High_confidence	4	5	9	0.443814	3.169925	chr3	132284781	132285620	LTR|ERV1|LTR1	-	chr3	131533564	132285410	CPNE4|ENST00000512055.5	-	131533564,131542556,131549946,131552439,131555496,131564215,131575070,131581578,131587483,131669674,131685874,131696541,131699908,131723445,131905263,132034566,132037556,132039524,132284042,132285239	131535329,131542793,131550080,131552491,131555551,131564349,131575130,131581665,131587582,131669764,131685958,131696616,131699980,131723625,131905444,132035442,132037710,132040321,132284170,132285410	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr2	89245030	89245042	89245040	-	RAMPAGE_only	3	6	13	0.641064	3.584963	chr2	89245031	89245086	SINE|tRNA-RTE|MamSINE1	+	chr2	88857160	88861923	STRG.25366.11	-	88857160,88861885	88857683,88861923	0.615385
upper_lobe_of_left_lung_female_adult_53_years	chr20	24930639	24930666	24930639	+	High_confidence	93	94	486	23.965939	6.717631	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930656	24932971	STRG.189791.1	+	24930656,24931346	24930774,24932971	0.948560
upper_lobe_of_left_lung_female_adult_53_years	chr1	40381277	40381366	40381352	+	RAMPAGE_only	6	6	43	2.120443	4.830692	chr1	40381190	40381531	LINE|L2|L2c	-	chr1	40373720	40389909	STRG.2692.7	+	40373720,40387889	40387834,40389909	0.883721
upper_lobe_of_left_lung_female_adult_53_years	chr6	117442523	117442524	117442523	-	RAMPAGE_only	27	28	28	1.380754	4.458591	chr6	117442358	117442707	LTR|ERVL-MaLR|THE1B	-	chr6	117326127	117425855	STRG.86332.7	-	117326127,117329328,117337171,117342399,117344059,117352989,117356628,117357803,117359808,117360341,117362602,117365059,117365580,117366075,117379058,117383316,117384585,117393223,117394615,117404279,117409581,117414518,117416257,117418461,117425533	117328813,117329446,117337340,117342544,117344262,117353169,117356915,117358009,117360011,117360405,117362865,117365204,117365741,117366293,117379159,117383508,117389846,117394346,117403277,117404428,117409642,117414545,117416317,117418506,117425855	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr1	46181625	46181644	46181643	+	RAMPAGE_only	8	9	15	0.739689	3.906891	chr1	46181615	46181833	LINE|L2|L2b	-	chr1	46183432	46184882	TSPAN1|ENST00000482143.5	+	46183432,46184190,46184784	46183683,46184668,46184882	0.533333
upper_lobe_of_left_lung_female_adult_53_years	chr3	155555212	155555216	155555213	-	RAMPAGE_only	3	4	8	0.394501	2.807355	chr3	155555213	155555573	LTR|ERVL-MaLR|MLT1J2	+	chr3	155479881	155582260	STRG.49924.4	-	155479881,155485355,155488027,155488659,155490783,155492728,155494140,155494337,155497319,155500702,155504554,155514722,155523896,155549786,155554075,155564914,155568230	155483048,155485710,155488107,155488806,155490868,155492853,155494248,155494517,155497417,155500794,155504626,155514884,155524004,155549958,155554196,155565118,155582260	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr12	643625	643636	643625	-	High_confidence	86	88	278	13.708911	6.329505	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.643885
upper_lobe_of_left_lung_female_adult_53_years	chr4	4036307	4036308	4036307	+	RAMPAGE_only	17	17	23	1.134191	4.055958	chr4	4033941	4037122	LTR|ERV1|HERVS71-int	-	chr4	4047958	4075225	STRG.53757.3	+	4047958,4074195	4048128,4075225	0.739130
upper_lobe_of_left_lung_female_adult_53_years	chr12	16796549	16796580	16796579	+	RAMPAGE_only	14	15	34	1.676629	4.663910	chr12	16796195	16796938	LINE|L2|L2c	+	chr12	16853447	16853827	STRG.139939.1	+	16853447	16853827	0.529412
upper_lobe_of_left_lung_female_adult_53_years	chr11	72088312	72088313	72088312	+	High_confidence	6	6	6	0.295876	2.584963	chr11	72088230	72088402	DNA|hAT-Tip100|MamTip2	-	chr11	72088319	72096895	LRTOMT|ENST00000541614.5	+	72088319,72089028,72093495,72094947,72096722	72088380,72089165,72093701,72095096,72096895	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr21	43893733	43893739	43893733	+	High_confidence	3	3	10	0.493126	3.121928	chr21	43893110	43894066	DNA|TcMar-Tigger|Tigger1	-	chr21	43893662	43893954	STRG.194971.1	+	43893662	43893954	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr12	131000387	131000420	131000414	+	RAMPAGE_only	3	4	9	0.443814	2.947703	chr12	131000459	131000769	SINE|Alu|AluSx1	+	chr12	131002498	131141460	ADGRD1|ENST00000376682.8	+	131002498,131003184,131004185,131005971,131014198,131076800,131084539,131104830,131105753,131108723,131118384,131120846,131131724,131136036,131136972,131138136,131139167	131002837,131003302,131004296,131006047,131014340,131076874,131084663,131104934,131105865,131108877,131118451,131120913,131131816,131136163,131137014,131138229,131141460	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr13	79276603	79276604	79276603	-	High_confidence	4	4	6	0.295876	2.584963	chr13	79274493	79277542	LTR|ERV1|HERVH-int	+	chr13	79251421	79276787	STRG.151976.1	-	79251421,79276520	79252049,79276787	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr17	50271485	50271488	50271485	+	High_confidence	19	19	31	1.528692	4.542748	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr2	118110301	118110336	118110301	+	RAMPAGE_only	6	7	13	0.641064	2.855389	chr2	118110145	118110545	DNA|TcMar-Tigger|Tigger2a	-	chr2	118088473	118110997	INSIG2|ENST00000485520.5	+	118088473,118096418,118103196,118106736,118107089,118108280	118088541,118096426,118103321,118106903,118107189,118110997	0.846154
upper_lobe_of_left_lung_female_adult_53_years	chr2	29114170	29114219	29114173	+	High_confidence	17	17	43	2.120443	4.993392	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.744186
upper_lobe_of_left_lung_female_adult_53_years	chr9	134373102	134373106	134373102	+	High_confidence	14	18	37	1.824567	4.939183	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134372633	134440723	STRG.119993.1	+	134372633,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134373180,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440723	0.783784
upper_lobe_of_left_lung_female_adult_53_years	chr15	57516527	57516554	57516553	+	RAMPAGE_only	4	4	14	0.690377	3.664498	chr15	57516424	57516656	DNA|hAT-Charlie|MER58A	-	chr15	57420813	57550727	STRG.163726.5	+	57420813,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57421250,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr7	6590251	6590293	6590262	+	High_confidence	5	5	35	1.725942	4.331977	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.514286
upper_lobe_of_left_lung_female_adult_53_years	chr14	35294424	35294454	35294442	+	RAMPAGE_only	5	5	12	0.591752	3.459432	chr14	35294442	35294674	SINE|MIR|MIR	+	chr14	35292472	35317419	PSMA6|ENST00000556506.1	+	35292472,35307993,35308913,35310739,35312880,35317248	35292552,35308088,35308995,35310895,35313059,35317419	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr11	12989543	12989544	12989543	-	High_confidence	4	6	7	0.345188	2.584963	chr11	12989406	12989730	LTR|ERVL-MaLR|THE1D	-	chr11	12980210	12989539	LINC00958|ENST00000534477.5	-	12980210,12986039,12989455	12980909,12986144,12989539	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr6	11301732	11301749	11301732	+	RAMPAGE_only	4	4	8	0.394501	3.000000	chr6	11298870	11304963	LINE|L1|L1PA6	+	chr6	11296883	11326191	STRG.78445.2	+	11296883,11306014,11320385,11321588	11305679,11306182,11320762,11326191	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr2	6866552	6866553	6866552	-	High_confidence	10	10	14	0.690377	2.719295	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.785714
upper_lobe_of_left_lung_female_adult_53_years	chr10	30999446	30999520	30999519	-	High_confidence	44	49	117	5.769578	6.031740	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30998633	30999735	STRG.122278.9	-	30998633	30999735	0.692308
upper_lobe_of_left_lung_female_adult_53_years	chr19	40928849	40928867	40928849	+	RAMPAGE_only	6	6	12	0.591752	2.663533	chr19	40928789	40929279	LTR|ERV1|HERV1_LTRc	-	chr19	40924272	40949234	STRG.186339.3	+	40924272,40928695,40936391,40938968,40941295,40942064,40944330,40944710,40949052	40926620,40936259,40936541,40939129,40941472,40942206,40944518,40944852,40949234	0.916667
upper_lobe_of_left_lung_female_adult_53_years	chr7	17457446	17457506	17457467	-	High_confidence	3	3	15	0.739689	3.235926	chr7	17457252	17457783	LTR|ERVL-MaLR|MLT1F	-	chr7	17427755	17457436	STRG.92628.9	-	17427755,17434947,17456681	17434500,17436233,17457436	0.933333
upper_lobe_of_left_lung_female_adult_53_years	chrX	53220846	53220851	53220846	-	RAMPAGE_only	6	6	12	0.591752	3.027169	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53192256	53225176	KDM5C|ENST00000404049.7	-	53192256,53193436,53193772,53194138,53194930,53195230,53195915,53196685,53197770,53198489,53198763,53198976,53201549,53201853,53210413,53210675,53211496,53211786,53214688,53215794,53216073,53217142,53217795,53218275,53220838,53224739	53193332,53193636,53193851,53194738,53195068,53195410,53196054,53197044,53197876,53198637,53198888,53199158,53201744,53201973,53210576,53210857,53211655,53211906,53214847,53215976,53216197,53217274,53217966,53218398,53220916,53225176	0.916667
upper_lobe_of_left_lung_female_adult_53_years	chr19	3575603	3575629	3575628	+	High_confidence	3	3	8	0.394501	3.000000	chr19	3575668	3575971	SINE|Alu|AluSx1	+	chr19	3575650	3578671	HMG20B|ENST00000487894.5	+	3575650,3576552,3576891,3577980,3578508	3576307,3576625,3577107,3578113,3578671	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr3	190334784	190334804	190334803	+	RAMPAGE_only	3	3	8	0.394501	2.807355	chr3	190334660	190334963	LTR|ERVL|LTR16A1	+	chr3	190322540	190404930	CLDN16|ENST00000468220.1	+	190322540,190370892,190374527,190402336,190404761	190322661,190371001,190374603,190402439,190404930	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr14	50159437	50159441	50159440	-	RAMPAGE_only	4	5	8	0.394501	2.807355	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chrX	7147267	7147288	7147287	+	High_confidence	12	12	40	1.972505	4.879506	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147299	7147619	STRG.198488.1	+	7147299	7147619	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr2	178323535	178323570	178323569	+	High_confidence	10	17	53	2.613569	5.012470	chr2	178323457	178323762	SINE|Alu|AluSq	-	chr2	178323569	178332701	OSBPL6|ENST00000477097.1	+	178323569,178324176,178328255,178331551,178332640	178323780,178324269,178328378,178331605,178332701	0.886792
upper_lobe_of_left_lung_female_adult_53_years	chr2	227245978	227245990	227245989	+	RAMPAGE_only	3	3	11	0.542439	3.121928	chr2	227246019	227246071	LINE|L2|L2b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr11	65434799	65434961	65434799	+	RAMPAGE_only	27	28	175	8.629710	5.587086	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.988571
upper_lobe_of_left_lung_female_adult_53_years	chrX	147937571	147937580	147937571	+	RAMPAGE_only	2	2	11	0.542439	2.846439	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.636364
upper_lobe_of_left_lung_female_adult_53_years	chr2	73249172	73249176	73249175	+	RAMPAGE_only	6	6	10	0.493126	3.121928	chr2	73249165	73249244	DNA|hAT-Ac|OldhAT1	-	chr2	73234307	73253004	CCT7|ENST00000398422.2	+	73234307,73247761,73248990,73249818,73250305,73251225,73252639	73234384,73247926,73249179,73249916,73250438,73251432,73253004	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr2	233691669	233691710	233691669	+	RAMPAGE_only	4	4	17	0.838315	4.087463	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233692865	233773305	UGT1A6|NM_001072.3	+	233692865,233767033,233767848,233768219,233772261	233693865,233767165,233767936,233768439,233773305	0.529412
upper_lobe_of_left_lung_female_adult_53_years	chr17	21001607	21001610	21001609	-	RAMPAGE_only	6	11	14	0.690377	3.521641	chr17	21001557	21001631	DNA|hAT-Charlie|MER58C	+	chr17	20999592	21043039	USP22|ENST00000261497.8	-	20999592,21004201,21004927,21006895,21007869,21011150,21012829,21015751,21017941,21019083,21021112,21028541,21042664	21003073,21004351,21004990,21006987,21007996,21011309,21012935,21015899,21018111,21019185,21021226,21028674,21043039	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr14	106845831	106845866	106845858	-	RAMPAGE_only	10	11	27	1.331441	4.458591	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106810441	106811131	IGHV3-74|ENST00000424969.2	-	106810441,106810849	106810746,106811131	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr2	218313504	218313505	218313504	-	RAMPAGE_only	11	11	12	0.591752	2.663533	chr2	218313410	218313517	LINE|L1|L1MC4a	-	chr2	218279334	218292586	TMBIM1|ENST00000440422.5	-	218279334,218280025,218281939,218285762,218292465	218279353,218280126,218282181,218285938,218292586	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr14	28613643	28613657	28613645	-	High_confidence	34	57	93	4.586075	5.860587	chr14	28613407	28613767	LTR|ERVL-MaLR|MLT1I	-	chr14	28611995	28613648	STRG.154195.1	-	28611995,28613458	28612478,28613648	0.655914
upper_lobe_of_left_lung_female_adult_53_years	chr3	197299307	197299317	197299316	-	High_confidence	6	7	15	0.739689	3.467720	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.800000
upper_lobe_of_left_lung_female_adult_53_years	chr19	50372850	50372869	50372865	+	High_confidence	7	9	20	0.986253	4.142664	chr19	50372845	50372986	SINE|Alu|AluSc	-	chr19	50372866	50378678	STRG.187155.3	+	50372866,50376333,50376718,50377586,50377732,50378148,50378521	50372985,50376576,50376826,50377648,50377870,50378439,50378678	0.550000
upper_lobe_of_left_lung_female_adult_53_years	chr7	116458946	116458947	116458946	-	RAMPAGE_only	6	7	9	0.443814	2.725481	chr7	116458900	116459048	LTR|ERV1|HERVH-int	+	chr7	116416116	116465276	AC002066.1|ENST00000439070.1	-	116416116,116417123,116465188	116416541,116417309,116465276	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr17	8056883	8056884	8056883	+	High_confidence	25	25	25	1.232816	4.293661	chr17	8056835	8057031	LTR|ERVK|LTR14	+	chr17	8057003	8057787	STRG.173796.1	+	8057003	8057787	0.680000
upper_lobe_of_left_lung_female_adult_53_years	chr11	26567053	26567076	26567075	-	High_confidence	2	2	8	0.394501	2.807355	chr11	26566991	26567187	SINE|MIR|MIRc	-	chr11	26559032	26567094	MUC15|ENST00000436318.6	-	26559032,26563115,26565164,26567051	26561225,26563265,26565896,26567094	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr8	38825317	38825361	38825360	+	RAMPAGE_only	18	18	66	3.254634	5.186376	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38820546	38848521	TACC1|ENST00000520611.1	+	38820546,38827167,38831124,38836161,38838469,38840223,38842289,38843288,38846698,38847954	38820635,38827375,38831177,38836287,38838546,38840267,38842447,38843395,38846819,38848521	0.848485
upper_lobe_of_left_lung_female_adult_53_years	chr9	73080369	73080370	73080369	-	High_confidence	47	48	48	2.367006	4.985336	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.895833
upper_lobe_of_left_lung_female_adult_53_years	chr8	143039246	143039267	143039266	+	High_confidence	4	4	9	0.443814	2.947703	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr2	164761388	164761412	164761409	-	RAMPAGE_only	3	3	14	0.690377	3.546594	chr2	164761399	164761470	SINE|Alu|AluSp	+	chr2	164722305	164773754	COBLL1|ENST00000452626.5	-	164722305,164722424,164727968,164729913,164743686,164773706	164722311,164722522,164728197,164730115,164743875,164773754	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr2	210225515	210225534	210225533	-	High_confidence	8	8	13	0.641064	3.188722	chr2	210225525	210225678	DNA|hAT-Charlie|Charlie24	-	chr2	210187938	210225491	ACADL|ENST00000233710.3	-	210187938,210192803,210195210,210203330,210204580,210205631,210210195,210216346,210217964,210220646,210225186	210189054,210192890,210195338,210203444,210204682,210205796,210210262,210216511,210218102,210220802,210225491	0.923077
upper_lobe_of_left_lung_female_adult_53_years	chr4	152850647	152850670	152850647	+	High_confidence	2	2	10	0.493126	2.725481	chr4	152850580	152850736	DNA|hAT-Charlie|MER5A1	+	chr4	152850642	152881173	ARFIP1|ENST00000511289.5	+	152850642,152863605,152870752,152872451,152880962	152850706,152863714,152870848,152872564,152881173	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr16	2331479	2331480	2331479	-	RAMPAGE_only	5	8	8	0.394501	3.000000	chr16	2331202	2331498	SINE|Alu|AluSz6	-	chr16	2323338	2329724	ABCA3|ENST00000567910.1	-	2323338,2324403,2326009,2326412,2328452,2329647	2323688,2324531,2326274,2326492,2328757,2329724	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr2	71423270	71423352	71423276	+	RAMPAGE_only	10	14	64	3.156008	5.337024	chr2	71423244	71423287	DNA|hAT-Ac|OldhAT1	+	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.968750
upper_lobe_of_left_lung_female_adult_53_years	chr9	127451104	127451113	127451104	-	High_confidence	3	4	8	0.394501	2.807355	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr2	232816695	232816750	232816731	+	RAMPAGE_only	5	5	25	1.232816	4.105389	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.920000
upper_lobe_of_left_lung_female_adult_53_years	chr3	152335094	152335095	152335094	+	RAMPAGE_only	12	12	15	0.739689	3.773557	chr3	152335017	152335180	DNA|DNA|UCON8	+	chr3	152329732	152415109	STRG.49587.8	+	152329732,152414940	152338673,152415109	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr16	2330614	2330658	2330614	-	High_confidence	5	5	26	1.282128	4.251629	chr16	2330319	2330618	SINE|Alu|AluSq	-	chr16	2323338	2329724	ABCA3|ENST00000567910.1	-	2323338,2324403,2326009,2326412,2328452,2329647	2323688,2324531,2326274,2326492,2328757,2329724	0.884615
upper_lobe_of_left_lung_female_adult_53_years	chr10	79555956	79555957	79555956	+	High_confidence	7	7	7	0.345188	2.807355	chr10	79555921	79556155	SINE|MIR|MIR	+	chr10	79555949	79556318	STRG.125163.1	+	79555949	79556318	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr2	201163955	201163966	201163955	+	RAMPAGE_only	25	25	47	2.317694	4.553197	chr2	201163983	201164293	SINE|Alu|AluSx1	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	0.936170
upper_lobe_of_left_lung_female_adult_53_years	chr5	73078286	73078289	73078286	+	RAMPAGE_only	4	7	13	0.641064	3.418296	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	0.846154
upper_lobe_of_left_lung_female_adult_53_years	chr19	44914321	44914322	44914321	+	High_confidence	17	17	25	1.232816	4.262692	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.840000
upper_lobe_of_left_lung_female_adult_53_years	chrX	20204049	20204067	20204066	-	RAMPAGE_only	5	5	17	0.838315	3.875000	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.941176
upper_lobe_of_left_lung_female_adult_53_years	chr2	202519033	202519037	202519033	+	RAMPAGE_only	4	4	9	0.443814	3.000000	chr2	202519079	202519382	SINE|Alu|AluSz6	+	chr2	202464807	202560341	BMPR2|ENST00000638587.1	+	202464807,202467052,202467518,202513718,202514887,202518821,202520086,202530793,202532584,202542310,202552715,202555251,202559695	202464983,202467054,202467689,202513829,202514979,202519052,202520201,202530954,202532732,202542447,202552888,202556531,202560341	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr2	190884781	190884782	190884781	+	RAMPAGE_only	7	7	7	0.345188	2.521641	chr2	190884796	190884941	LINE|L1|L1ME3Cz	+	chr2	190881154	190896568	STRG.32138.16	+	190881154,190895603	190895248,190896568	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr2	204544984	204544986	204544985	+	High_confidence	10	16	21	1.035565	3.441446	chr2	204544936	204545029	SINE|MIR|MIR3	+	chr2	204545792	205620162	PARD3B|NM_205863.3	+	204545792,204686180,204965151,205047580,205104425,205113490,205118920,205121590,205124326,205125608,205158721,205172210,205176444,205185763,205193204,205245777,205300529,205301463,205401012,205499895,205553323,205615455	204546119,204686282,204965323,205047690,205104514,205113577,205119046,205121949,205124466,205125737,205158907,205172381,205176577,205185863,205193320,205245822,205300736,205301701,205401123,205500031,205553403,205620162	0.809524
upper_lobe_of_left_lung_female_adult_53_years	chr11	65440270	65440505	65440305	+	RAMPAGE_only	30	30	439	21.648245	6.259521	chr11	65440323	65440484	SINE|Alu|AluJo	+	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.993166
upper_lobe_of_left_lung_female_adult_53_years	chr5	67490662	67490719	67490662	-	High_confidence	144	146	258	12.722659	6.575931	chr5	67490503	67490858	LTR|ERVL-MaLR|THE1A	-	chr5	67465034	67490679	STRG.68913.2	-	67465034,67466872,67467905,67490579	67465327,67466938,67468053,67490679	0.872093
upper_lobe_of_left_lung_female_adult_53_years	chr13	46711804	46711813	46711804	+	RAMPAGE_only	3	3	8	0.394501	2.521641	chr13	46711708	46711858	LINE|L1|X9_LINE	-	chr13	46553259	46742733	LRCH1|ENST00000389797.7	+	46553259,46650200,46669029,46681740,46685904,46687851,46689132,46692535,46694892,46699335,46701120,46705067,46705267,46711790,46712524,46715559,46723220,46728846,46733920,46741641	46553703,46650345,46669156,46681846,46686041,46687979,46689196,46692641,46695017,46699403,46701207,46705157,46705304,46711844,46712597,46715664,46723330,46728984,46733998,46742733	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr2	187529375	187529404	187529375	-	RAMPAGE_only	5	5	14	0.690377	3.238901	chr2	187529293	187529670	LTR|ERVL-MaLR|MLT1B	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr11	65431672	65431725	65431691	+	RAMPAGE_only	5	5	32	1.578004	4.548394	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.937500
upper_lobe_of_left_lung_female_adult_53_years	chr3	187021850	187021852	187021850	+	High_confidence	48	93	106	5.227139	5.429610	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.924528
upper_lobe_of_left_lung_female_adult_53_years	chr15	63985194	63985195	63985194	-	RAMPAGE_only	10	11	11	0.542439	3.121928	chr15	63985056	63985172	LINE|L2|L2b	-	chr15	63939292	64030020	DAPK2|ENST00000559897.1	-	63939292,63971422,63983624,64029788	63939361,63971561,63983754,64030020	0.727273
upper_lobe_of_left_lung_female_adult_53_years	chrX	136639641	136639662	136639661	+	High_confidence	8	8	18	0.887627	3.614369	chrX	136639709	136639834	SINE|MIR|MIR3	+	chrX	136639666	136642426	LINC00892|ENST00000429841.1	+	136639666,136640773,136642102	136639804,136640840,136642426	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr8	102275542	102275563	102275542	-	RAMPAGE_only	7	7	20	0.986253	3.821928	chr8	102275368	102275493	LINE|L1|L1ME3E	-	chr8	102271193	102276820	UBR5|ENST00000521566.1	-	102271193,102272528,102275520,102275707,102276773	102271245,102272772,102275619,102275828,102276820	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr18	80147929	80147932	80147931	+	High_confidence	5	9	11	0.542439	2.521928	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80147923	80178432	PARD6G-AS1|NR_028340.1	+	80147923,80175879,80178085	80148254,80175935,80178432	0.636364
upper_lobe_of_left_lung_female_adult_53_years	chr10	73536384	73536401	73536400	-	RAMPAGE_only	4	4	9	0.443814	3.169925	chr10	73536351	73536426	LINE|L1|L1PBa	+	chr10	73497537	73541702	USP54|ENST00000424265.5	-	73497537,73500654,73505307,73516374,73520907,73523582,73526646,73529679,73530142,73530703,73534599,73536268,73539443,73541374,73541632	73499188,73500838,73505426,73517747,73521027,73523750,73526780,73529911,73530523,73530835,73534770,73536437,73539593,73541521,73541702	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr19	10555125	10555126	10555125	-	RAMPAGE_only	5	5	7	0.345188	2.521641	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr9	111284874	111284875	111284874	-	High_confidence	32	32	33	1.627317	3.941428	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr1	12572735	12572832	12572757	-	RAMPAGE_only	4	5	36	1.775255	4.451885	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.944444
upper_lobe_of_left_lung_female_adult_53_years	chr3	180870518	180870540	180870518	-	High_confidence	4	4	8	0.394501	2.521641	chr3	180870076	180870678	LTR|ERV1|LTR1C1	-	chr3	180707588	180870178	LOC101928882|NR_109986.1	-	180707588,180711192,180711309,180725514,180733478,180734486,180737492,180747879,180748245,180751347,180781983,180810409,180847506,180870046	180708904,180711219,180711382,180725573,180733682,180734606,180737814,180748043,180748319,180751410,180782124,180810470,180847624,180870178	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr17	64342049	64342055	64342049	-	RAMPAGE_only	5	5	16	0.789002	3.456565	chr17	64341867	64342175	SINE|Alu|AluSz	+	chr17	64319414	64390878	PECAM1|NM_000442.4	-	64319414,64329699,64341633,64348259,64350379,64352389,64353490,64354932,64356110,64360139,64363148,64369749,64375050,64377823,64390488,64390601	64323845,64329722,64341690,64348322,64350433,64352463,64353518,64355040,64356398,64360415,64363397,64370025,64375356,64378117,64390515,64390878	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr19	20750334	20750382	20750334	-	RAMPAGE_only	17	24	126	6.213392	5.818953	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746922	20755250	AC010329.1|ENST00000593903.1	-	20746922	20755250	0.992063
upper_lobe_of_left_lung_female_adult_53_years	chr8	76988324	76988337	76988324	-	High_confidence	3	3	6	0.295876	2.584963	chr8	76988253	76988288	DNA|hAT-Charlie|MER5A	-	chr8	76980257	76988849	STRG.107097.3	-	76980257,76986186	76984195,76988849	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr12	643857	643891	643881	-	High_confidence	11	11	30	1.479379	4.056565	chr12	643825	644012	LINE|L2|L2c	+	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.800000
upper_lobe_of_left_lung_female_adult_53_years	chr15	58851957	58851958	58851957	+	RAMPAGE_only	10	10	10	0.493126	3.121928	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr13	106562018	106562045	106562018	-	High_confidence	6	7	16	0.789002	3.875000	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.812500
upper_lobe_of_left_lung_female_adult_53_years	chr2	24505587	24505624	24505623	+	RAMPAGE_only	5	5	10	0.493126	3.321928	chr2	24505635	24506165	LTR|ERVL-MaLR|MLT1K	+	chr2	24491682	24523728	STRG.20396.4	+	24491682	24523728	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr11	65439078	65439126	65439125	+	RAMPAGE_only	24	24	62	3.057383	4.964131	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr10	121989142	121989195	121989194	+	High_confidence	10	10	21	1.035565	4.011365	chr10	121988759	121989476	LTR|ERV1|MER50	+	chr10	121989193	122254542	TACC2|ENST00000369005.5	+	121989193,122021936,122050437,122082646,122088477,122132608,122143571,122195039,122210396,122215390,122216626,122224725,122226365,122227836,122229345,122230350,122237394,122237960,122241957,122248642,122249049,122249543,122253990	121989488,122022014,122050550,122087959,122088591,122132734,122143706,122195176,122211708,122215451,122216828,122224787,122226481,122228008,122229486,122230440,122237538,122238037,122242001,122248803,122249156,122249664,122254542	0.952381
upper_lobe_of_left_lung_female_adult_53_years	chr19	48753676	48753677	48753676	-	High_confidence	32	32	32	1.578004	4.413910	chr19	48753519	48753902	LTR|ERVK|LTR13A	-	chr19	48748010	48753682	STRG.187314.1	-	48748010,48752489,48753324	48751283,48753122,48753682	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr1	220032391	220032417	220032391	-	RAMPAGE_only	2	2	9	0.443814	3.000000	chr1	220032081	220032353	SINE|Alu|AluY	-	chr1	219987295	220046451	EPRS|ENST00000609181.5	-	219987295,219988589,219996982,220001137,220005247,220006105,220007201,220010945,220018125,220018448,220018994,220019987,220022346,220024263,220025131,220030385,220032386,220033501,220034913,220040184,220046342	219987404,219988823,219997342,220001255,220005360,220006313,220007338,220011056,220018146,220018508,220019079,220020221,220022518,220024456,220025258,220030480,220032526,220033658,220035013,220040269,220046451	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr17	56904401	56904454	56904401	-	High_confidence	4	4	15	0.739689	3.640224	chr17	56904299	56904405	LINE|CR1|L3	-	chr17	56895769	56904343	TRIM25|ENST00000570473.5	-	56895769,56899114,56901418,56904254	56895952,56899180,56901578,56904343	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr5	108768222	108768236	108768235	+	RAMPAGE_only	3	3	7	0.345188	2.521641	chr5	108768042	108768250	LINE|CR1|L3b	-	chr5	108748966	108843001	FER|ENST00000502752.1	+	108748966,108768092,108782662,108798123,108832769,108835707,108841830,108842261	108748993,108768238,108782755,108798389,108832943,108835807,108841868,108843001	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr5	34244815	34244816	34244815	-	RAMPAGE_only	4	6	7	0.345188	2.807355	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34218343	AC138409.2|ENST00000507274.1	-	34175821,34179012,34182679,34218294	34175957,34179097,34182867,34218343	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr2	133420897	133420917	133420897	-	High_confidence	4	4	11	0.542439	3.121928	chr2	133420677	133420884	SINE|MIR|MIRb	-	chr2	132671798	133421819	STRG.27507.1	-	132671798,132725626,132728815,132731736,132773815,132781051,132781939,132790022,132796627,132860491,132868935,132878847,132963719,132994151,133129977,133213715,133303036,133416771	132673305,132725759,132728952,132732051,132773894,132781229,132785718,132790205,132796729,132860611,132868974,132878916,132963869,132994239,133130111,133213779,133303110,133421819	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr15	88635643	88635661	88635654	+	High_confidence	23	23	77	3.797073	4.897776	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303234.1	+	88635636,88636166,88639342,88652109,88655414	88635700,88636292,88639594,88652310,88656344	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr7	76572015	76572045	76572015	+	RAMPAGE_only	6	6	20	0.986253	3.932138	chr7	76571794	76572139	LINE|L2|L2a	-	chr7	76561396	76593775	STRG.96413.5	+	76561396	76593775	0.950000
upper_lobe_of_left_lung_female_adult_53_years	chr22	49657343	49657356	49657348	-	High_confidence	13	19	47	2.317694	4.638378	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49655491	49657389	STRG.197853.1	-	49655491	49657389	0.914894
upper_lobe_of_left_lung_female_adult_53_years	chr2	38082945	38082961	38082945	+	High_confidence	3	3	15	0.739689	3.506891	chr2	38082459	38082962	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.933333
upper_lobe_of_left_lung_female_adult_53_years	chr1	174238848	174238907	174238906	+	RAMPAGE_only	8	8	43	2.120443	4.212815	chr1	174233266	174239293	LINE|L1|L1PA2	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.906977
upper_lobe_of_left_lung_female_adult_53_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	4	4	6	0.295876	2.584963	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr1	112936000	112936022	112936000	-	High_confidence	4	4	8	0.394501	2.807355	chr1	112935803	112935998	LINE|L1|L1MEd	-	chr1	112917515	112935988	SLC16A1|ENST00000443580.5	-	112917515,112921989,112929091,112935823	112918044,112922133,112929352,112935988	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr14	23612502	23612528	23612523	+	High_confidence	38	38	192	9.468025	5.714911	chr14	23612270	23612982	LINE|L2|L2a	-	chr14	23612537	23626649	STRG.153948.1	+	23612537,23612714,23619202,23626590	23612609,23612860,23619351,23626649	0.911458
upper_lobe_of_left_lung_female_adult_53_years	chr11	72758533	72758553	72758533	-	High_confidence	9	10	22	1.084878	3.001609	chr11	72758342	72758509	SINE|MIR|MIRb	-	chr11	72754728	72759309	STARD10|ENST00000537351.5	-	72754728,72755121,72755700,72757766,72758529,72759233	72754782,72755142,72755753,72757884,72758633,72759309	0.636364
upper_lobe_of_left_lung_female_adult_53_years	chr2	37973809	37973871	37973870	+	RAMPAGE_only	13	14	44	2.169756	4.661263	chr2	37973395	37973996	LINE|L2|L2a	-	chr2	37950463	38004187	RMDN2|ENST00000442857.5	+	37950463,37974039,37975211,37981282,37989540,37991219,37997415,38003990,38004135	37950595,37974214,37975314,37981343,37989616,37991297,37997514,38004044,38004187	0.954545
upper_lobe_of_left_lung_female_adult_53_years	chr4	102431237	102431260	102431244	-	High_confidence	12	12	50	2.465632	5.054381	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.800000
upper_lobe_of_left_lung_female_adult_53_years	chr1	111473767	111473814	111473813	+	High_confidence	4	4	13	0.641064	3.238901	chr1	111473535	111473833	SINE|Alu|AluYm1	+	chr1	111473791	111478512	C1orf162|ENST00000343534.9	+	111473791,111476017,111476797,111477333,111477650,111477982	111474030,111476065,111476867,111477428,111477775,111478512	0.923077
upper_lobe_of_left_lung_female_adult_53_years	chr14	95516120	95516123	95516122	+	High_confidence	5	11	13	0.641064	3.085055	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr16	10531314	10531747	10531318	-	RAMPAGE_only	50	65	600	29.587579	7.062289	chr16	10530980	10531270	SINE|Alu|AluSx1	-	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.998333
upper_lobe_of_left_lung_female_adult_53_years	chr16	10507119	10507130	10507129	-	RAMPAGE_only	3	3	6	0.295876	2.584963	chr16	10506967	10507093	LINE|L1|L1MC5	-	chr16	10500060	10528202	STRG.168731.8	-	10500060,10512453,10525958	10512234,10515232,10528202	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr14	81192654	81192703	81192669	-	RAMPAGE_only	8	11	36	1.775255	4.707715	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.972222
upper_lobe_of_left_lung_female_adult_53_years	chr8	11864387	11864450	11864438	-	RAMPAGE_only	4	4	17	0.838315	3.734522	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.882353
upper_lobe_of_left_lung_female_adult_53_years	chr11	12195916	12195942	12195941	+	High_confidence	9	9	16	0.789002	3.773557	chr11	12195751	12196592	LINE|L2|L2	-	chr11	12195944	12197811	MICAL2|ENST00000532166.5	+	12195944,12197486	12196200,12197811	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr9	72363527	72363576	72363573	-	RAMPAGE_only	6	6	25	1.232816	4.373661	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364976	STRG.115299.4	-	72354457,72356930,72359417,72360109,72360627,72364695	72356101,72357056,72359521,72360221,72363606,72364976	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr14	101819776	101819782	101819779	+	RAMPAGE_only	8	8	20	0.986253	4.037401	chr14	101819651	101819923	SINE|Alu|AluJb	-	chr14	101761861	101821098	PPP2R5C|ENST00000556068.5	+	101761861,101762904,101786017,101818026	101761920,101762970,101786183,101821098	0.650000
upper_lobe_of_left_lung_female_adult_53_years	chr2	47369417	47369432	47369431	+	High_confidence	3	3	6	0.295876	2.584963	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369474	47375254	EPCAM|ENST00000474691.1	+	47369474,47373462,47375233	47369581,47374048,47375254	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr9	127762413	127762431	127762413	-	High_confidence	2	2	6	0.295876	2.584963	chr9	127762302	127762854	LINE|L2|L2a	+	chr9	127744897	127762416	SH2D3C|ENST00000440630.5	-	127744897,127747146,127749210,127751171,127761610,127762391	127745099,127747271,127749665,127751300,127761650,127762416	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr14	50756903	50756927	50756926	-	RAMPAGE_only	5	5	11	0.542439	3.095795	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr11	96387594	96387637	96387636	-	High_confidence	3	3	13	0.641064	3.546594	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	0.846154
upper_lobe_of_left_lung_female_adult_53_years	chr7	131510304	131510330	131510329	-	High_confidence	4	5	9	0.443814	3.169925	chr7	131510213	131510511	SINE|Alu|AluSx3	+	chr7	131509068	131510898	PODXL|ENST00000482581.1	-	131509068,131510827	131509585,131510898	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr9	114394398	114394413	114394412	-	High_confidence	8	10	16	0.789002	3.327820	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr22	50785222	50785227	50785222	+	RAMPAGE_only	3	4	7	0.345188	2.584963	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr7	158863392	158863410	158863408	+	RAMPAGE_only	4	8	17	0.838315	3.875000	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.882353
upper_lobe_of_left_lung_female_adult_53_years	chr11	118700419	118700428	118700426	+	High_confidence	3	6	14	0.690377	3.324863	chr11	118700359	118700777	LTR|ERVL-MaLR|MLT1H	+	chr11	118700426	118708848	AP002954.1|ENST00000646572.1	+	118700426,118704607,118708381	118700643,118704838,118708848	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr18	23839863	23839928	23839927	+	RAMPAGE_only	5	5	27	1.331441	3.674841	chr18	23839949	23840134	DNA|hAT-Charlie|MER5A	+	chr18	23838795	23956222	LAMA3|ENST00000649721.1	+	23838795,23839784,23842394,23842610,23845008,23846296,23847463,23857843,23858688,23861645,23864784,23867833,23871430,23876293,23881935,23884772,23890010,23894297,23894906,23898737,23898953,23899287,23901126,23903008,23903932,23904552,23905521,23909152,23912710,23914409,23914697,23915288,23916550,23920934,23921451,23928122,23928624,23931061,23932159,23933781,23939222,23943787,23946143,23949764,23950028,23951683,23952989,23954502	23838878,23839929,23842521,23842750,23845124,23846508,23847668,23857988,23858829,23861807,23864883,23867917,23871661,23876407,23882045,23884853,23890117,23894348,23895058,23898848,23899065,23899455,23901323,23903125,23904087,23904694,23905624,23909295,23912881,23914561,23914860,23915422,23916695,23921054,23921585,23928240,23928765,23931201,23932291,23933935,23939386,23943971,23946284,23949924,23950159,23951777,23953109,23956222	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chrX	73825034	73825035	73825034	-	RAMPAGE_only	10	10	12	0.591752	3.095795	chrX	73825002	73825055	SINE|MIR|MIRc	-	chrX	73823336	73829691	XIST|ENST00000649757.1	-	73823336,73829067	73827984,73829691	0.916667
upper_lobe_of_left_lung_female_adult_53_years	chr1	12409815	12409855	12409854	+	RAMPAGE_only	6	7	16	0.789002	3.773557	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr8	94950264	94950289	94950264	+	High_confidence	4	4	11	0.542439	3.277613	chr8	94950149	94950305	SINE|MIR|MIRc	+	chr8	94949426	94959696	STRG.108148.9	+	94949426,94950770,94957994	94950359,94950809,94959696	0.636364
upper_lobe_of_left_lung_female_adult_53_years	chr9	116687116	116687122	116687116	-	High_confidence	3	3	8	0.394501	2.807355	chr9	116687010	116687161	SINE|MIR|MIR3	+	chr9	116425224	116687215	ASTN2|NM_198186.3	-	116425224,116440608,116442452,116487358,116618323,116620309,116651527,116686696	116426088,116440792,116442553,116487500,116618472,116620443,116651793,116687215	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr3	63645170	63645171	63645170	+	RAMPAGE_only	5	6	6	0.295876	2.584963	chr3	63645170	63651333	LINE|L1|L1PA4	+	chr3	63652667	63664721	SNTN|ENST00000343837.7	+	63652667,63654761,63659724,63663936	63652797,63654796,63659864,63664721	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr1	16950991	16951035	16951007	+	RAMPAGE_only	3	3	17	0.838315	3.750000	chr1	16950976	16951061	DNA|hAT-Ac|OldhAT1	+	chr1	16953156	16954781	CROCC|ENST00000497654.2	+	16953156,16954222,16954733	16953481,16954357,16954781	0.764706
upper_lobe_of_left_lung_female_adult_53_years	chr12	6016516	6016623	6016516	-	RAMPAGE_only	9	12	78	3.846385	5.378936	chr12	6016356	6016502	SINE|MIR|MIR3	-	chr12	5948873	6124675	VWF|ENST00000261405.9	-	5948873,5949785,5951843,5952390,5953495,5967485,5968126,5969210,5971598,5976110,5981785,5983149,5985044,5985562,5991818,5993861,5994414,5996001,6011616,6012086,6013480,6016088,6016515,6016753,6018364,6021899,6022739,6023630,6025579,6025905,6029341,6031443,6034687,6036387,6044290,6046722,6052542,6056856,6057848,6062953,6064245,6065136,6071296,6072330,6073618,6075334,6095459,6110373,6110865,6121173,6123141,6124420	5949203,5949883,5951883,5952519,5953594,5967602,5968167,5969391,5971709,5976260,5981991,5983254,5985119,5985665,5992018,5994203,5994607,5996222,6011794,6012130,6013645,6016232,6016656,6016870,6019743,6022035,6022898,6023787,6025693,6026046,6029488,6031578,6034826,6036491,6044451,6046817,6052783,6057072,6058044,6063054,6064384,6065273,6071343,6072442,6073741,6075551,6095584,6110582,6110968,6121338,6123196,6124675	0.987179
upper_lobe_of_left_lung_female_adult_53_years	chr4	184382288	184382295	184382294	-	RAMPAGE_only	21	21	33	1.627317	4.250000	chr4	184382179	184382738	LTR|ERVL|LTR67B	+	chr4	184376287	184383409	STRG.65236.1	-	184376287,184382133	184379129,184383409	0.818182
upper_lobe_of_left_lung_female_adult_53_years	chr8	109581019	109581082	109581048	-	High_confidence	64	66	203	10.010464	5.044928	chr8	109580602	109581257	LINE|L2|L2c	+	chr8	109575974	109581058	SYBU|ENST00000527707.5	-	109575974,109577867,109579798,109580878	109576013,109578017,109580002,109581058	0.916256
upper_lobe_of_left_lung_female_adult_53_years	chr5	172854678	172854699	172854678	+	RAMPAGE_only	2	2	6	0.295876	2.584963	chr5	172854401	172854991	DNA|TcMar-Tigger|MER6A	+	chr5	172834410	172920571	ERGIC1|ENST00000523291.5	+	172834410,172888698,172897001,172909666,172914713,172920363	172834433,172888760,172897074,172909761,172914838,172920571	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr9	121313980	121314021	121314002	+	RAMPAGE_only	35	35	120	5.917516	5.318994	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.991667
upper_lobe_of_left_lung_female_adult_53_years	chr11	100715407	100715410	100715407	+	RAMPAGE_only	7	8	17	0.838315	3.750000	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100738442	100913524	ARHGAP42|ENST00000534060.5	+	100738442,100770342,100795104,100816714,100859553,100913451	100738498,100770438,100795166,100816856,100859625,100913524	0.588235
upper_lobe_of_left_lung_female_adult_53_years	chr4	184343957	184343968	184343967	-	RAMPAGE_only	7	8	19	0.936940	3.947703	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184340733	184342502	STRG.65229.1	-	184340733	184342502	0.526316
upper_lobe_of_left_lung_female_adult_53_years	chr1	207020648	207020668	207020648	-	RAMPAGE_only	5	5	11	0.542439	3.095795	chr1	207020623	207020762	DNA|TcMar-Tigger|Tigger14a	-	chr1	207018520	207032747	C1orf116|ENST00000359470.5	-	207018520,207024886,207027493,207032578	207023480,207025064,207027679,207032747	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr21	45562968	45563180	45563026	-	High_confidence	22	22	203	10.010464	6.278150	chr21	45562422	45564060	LINE|L1|L1MC3	+	chr21	45513775	45563140	STRG.195141.3	-	45513775,45525816,45530769,45531388,45537770,45562741	45516140,45525958,45530971,45532148,45538008,45563140	0.822660
upper_lobe_of_left_lung_female_adult_53_years	chr9	110170542	110170701	110170695	+	RAMPAGE_only	56	56	224	11.046029	5.838279	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	0.991071
upper_lobe_of_left_lung_female_adult_53_years	chr1	10627845	10627860	10627845	+	RAMPAGE_only	6	9	19	0.936940	3.932138	chr1	10627881	10627923	DNA|hAT-Blackjack|MER81	+	chr1	10474945	10630758	PEX14|NM_004565.2	+	10474945,10495273,10536212,10599237,10618331,10623018,10624339,10627271,10629530	10475002,10495321,10536297,10599366,10618417,10623121,10624437,10627363,10630758	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr14	106846262	106846263	106846262	-	High_confidence	11	11	17	0.838315	4.000000	chr14	106845982	106849095	LINE|L1|L1PBb	-	chr14	106845919	106846260	STRG.160698.1	-	106845919	106846260	0.647059
upper_lobe_of_left_lung_female_adult_53_years	chr7	87040212	87040223	87040212	-	RAMPAGE_only	22	25	61	3.008071	5.701229	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.524590
upper_lobe_of_left_lung_female_adult_53_years	chr8	29735222	29735223	29735222	-	High_confidence	7	8	8	0.394501	2.807355	chr8	29735013	29735262	SINE|MIR|MIR	-	chr8	29673921	29735223	LINC00589|ENST00000518623.5	-	29673921,29677909,29726155,29735170	29674443,29678004,29726423,29735223	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr14	101731413	101731414	101731413	+	High_confidence	20	20	27	1.331441	4.133661	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.851852
upper_lobe_of_left_lung_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	9	9	12	0.591752	3.277613	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.583333
upper_lobe_of_left_lung_female_adult_53_years	chr9	39810023	39810094	39810033	-	High_confidence	19	19	47	2.317694	4.852045	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803253	39810013	STRG.114197.2	-	39803253,39809485,39809730	39803859,39809615,39810013	0.936170
upper_lobe_of_left_lung_female_adult_53_years	chr14	103529027	103529104	103529027	-	High_confidence	5	5	30	1.479379	3.650410	chr14	103528849	103528983	SINE|Alu|AluJo	-	chr14	103525009	103529072	AL133367.1|ENST00000568177.1	-	103525009	103529072	0.766667
upper_lobe_of_left_lung_female_adult_53_years	chr1	92847193	92847196	92847193	-	RAMPAGE_only	2	2	7	0.345188	2.584963	chr1	92847043	92847171	LINE|L1|L1ME4c	-	chr1	92842159	92877150	FAM69A|ENST00000613047.4	-	92842159,92847182,92850847,92876295,92876960	92844195,92847359,92850955,92876430,92877150	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr1	78143615	78143645	78143632	-	High_confidence	18	18	95	4.684700	5.130870	chr1	78143187	78143687	LINE|L2|L2a	+	chr1	78135148	78143614	STRG.6229.1	-	78135148,78143340	78135181,78143614	0.831579
upper_lobe_of_left_lung_female_adult_53_years	chr17	2975608	2975622	2975608	+	RAMPAGE_only	2	2	7	0.345188	2.584963	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2981208	3026248	STRG.173208.1	+	2981208,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007	2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026248	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr12	53467737	53467757	53467737	+	High_confidence	4	4	9	0.443814	2.947703	chr12	53467721	53467786	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr2	19305993	19306001	19306000	-	High_confidence	4	4	8	0.394501	2.521641	chr2	19305839	19311862	LINE|L1|L1PA2	+	chr2	19304381	19305654	STRG.20099.1	-	19304381	19305654	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr3	37058886	37058907	37058886	-	RAMPAGE_only	10	10	20	0.986253	3.984184	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053749	37055731	STRG.39407.15	-	37053749,37054410	37053961,37055731	0.950000
upper_lobe_of_left_lung_female_adult_53_years	chr12	21818157	21818193	21818186	-	RAMPAGE_only	3	3	14	0.690377	3.180833	chr12	21817882	21818136	LINE|L1|L1PA8A	-	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	0.928571
upper_lobe_of_left_lung_female_adult_53_years	chr5	17058691	17058727	17058726	+	RAMPAGE_only	15	15	56	2.761507	4.951709	chr5	17058746	17058973	SINE|Alu|AluJb	+	chr5	17063241	17089434	STRG.66127.2	+	17063241,17065550,17089072	17063653,17065700,17089434	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr16	10444248	10444249	10444248	-	RAMPAGE_only	6	6	7	0.345188	2.584963	chr16	10443659	10445502	LTR|ERV1|HERVIP10B3-int	-	chr16	10439985	10498350	STRG.168731.4	-	10439985,10444075,10444317,10470655,10481387	10441844,10444200,10470590,10481351,10498350	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr7	100082579	100082582	100082579	-	High_confidence	4	4	12	0.591752	3.084963	chr7	100082301	100082600	SINE|Alu|AluSx1	+	chr7	100069970	100082548	ZNF3|NM_001278284.1	-	100069970,100075134,100075541,100077302,100079535,100082300	100072212,100075261,100075630,100077433,100079656,100082548	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr11	29482727	29482767	29482766	+	High_confidence	7	7	29	1.430066	4.556088	chr11	29482716	29482992	SINE|Alu|AluSz	-	chr11	29482809	29552580	STRG.130978.1	+	29482809,29483976,29552359	29482854,29484062,29552580	0.620690
upper_lobe_of_left_lung_female_adult_53_years	chr8	100313456	100313466	100313465	-	RAMPAGE_only	7	8	12	0.591752	3.418296	chr8	100313122	100313809	LINE|L2|L2b	-	chr8	100257341	100310327	RNF19A|ENST00000341084.6	-	100257341,100259853,100261541,100264033,100264670,100268784,100269868,100274952,100287500,100309866	100259246,100259997,100261755,100264195,100264785,100268947,100270013,100275161,100288267,100310327	0.916667
upper_lobe_of_left_lung_female_adult_53_years	chr4	83189639	83189646	83189639	-	RAMPAGE_only	11	11	21	1.035565	4.037401	chr4	83189440	83189659	LTR|ERV1|MER34B-int	-	chr4	83139259	83139585	STRG.58459.1	-	83139259	83139585	0.523810
upper_lobe_of_left_lung_female_adult_53_years	chr15	45131551	45131603	45131552	+	RAMPAGE_only	5	9	22	1.084878	3.975418	chr15	45131361	45131604	SINE|MIR|MIRc	-	chr15	45130037	45164966	DUOX1|ENST00000561220.6	+	45130037,45131917,45133863,45134144,45135103,45135473,45135781,45136349,45136528,45137923,45139065,45140894,45141291,45141927,45143189,45144035,45144894,45147432,45147903,45148271,45150631,45151122,45151873,45152285,45153379,45153950,45155801,45160836,45161737,45162218,45163531,45163789,45164778	45130098,45132024,45133947,45134309,45135291,45135675,45135948,45136410,45136625,45138014,45139168,45141070,45141410,45142112,45143303,45144235,45145080,45147658,45147997,45148447,45150701,45151248,45152052,45152516,45153479,45154000,45155929,45160990,45161970,45162377,45163687,45163918,45164966	0.727273
upper_lobe_of_left_lung_female_adult_53_years	chr2	171555879	171555904	171555886	+	RAMPAGE_only	12	13	33	1.627317	4.354852	chr2	171555665	171555905	SINE|MIR|MIR	-	chr2	171522476	171557646	CYBRD1|ENST00000375252.3	+	171522476,171553345,171554523	171522738,171553500,171557646	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr8	126805179	126805191	126805190	+	RAMPAGE_only	5	8	13	0.641064	3.180833	chr8	126799617	126805646	LINE|L1|L1PA2	-	chr8	126865436	126865768	STRG.110225.1	+	126865436	126865768	0.615385
upper_lobe_of_left_lung_female_adult_53_years	chr20	53504303	53504341	53504313	-	High_confidence	4	4	24	1.183503	4.229871	chr20	53503851	53509874	LINE|L1|L1PA2	+	chr20	53453057	53504314	AL354993.2|ENST00000558738.1	-	53453057,53455255,53461468,53504108	53453108,53455440,53461568,53504314	0.708333
upper_lobe_of_left_lung_female_adult_53_years	chr12	104030726	104030727	104030726	+	High_confidence	11	11	11	0.542439	3.277613	chr12	104029875	104030730	LINE|L1|L1MA9	+	chr12	104030778	104031543	AC078819.1|ENST00000547454.1	+	104030778	104031543	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr1	147172940	147172976	147172975	+	High_confidence	5	7	14	0.690377	3.180833	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.928571
upper_lobe_of_left_lung_female_adult_53_years	chr12	91179462	91179549	91179462	-	High_confidence	881	912	3614	178.215849	7.053171	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.723298
upper_lobe_of_left_lung_female_adult_53_years	chr2	210253426	210253427	210253426	+	RAMPAGE_only	262	268	363	17.900485	6.924686	chr2	210253335	210253584	LTR|ERVL|LTR32	+	chr2	210324758	210460882	LANCL1-AS1|ENST00000433296.5	+	210324758,210427748,210428039,210429364,210460474	210324834,210427923,210428157,210429451,210460882	0.550964
upper_lobe_of_left_lung_female_adult_53_years	chr2	231270487	231270530	231270494	+	High_confidence	41	41	217	10.700841	6.656870	chr2	231270419	231270687	LINE|L1|HAL1	-	chr2	231270531	231361494	STRG.35148.3	+	231270531,231270981,231272954,231276635,231278381,231282058,231291352,231296197,231331792,231344974,231355797,231360753	231270700,231271072,231273078,231276775,231278458,231282133,231291443,231296253,231331897,231345090,231355934,231361494	0.548387
upper_lobe_of_left_lung_female_adult_53_years	chr11	71745875	71745915	71745875	+	High_confidence	24	24	94	4.635387	5.598471	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.893617
upper_lobe_of_left_lung_female_adult_53_years	chr13	114047458	114047468	114047458	-	RAMPAGE_only	6	6	18	0.887627	3.614369	chr13	114046747	114047654	LINE|L1|L1M5	+	chr13	114021408	114036193	RASA3|ENST00000542651.2	-	114021408,114024278,114027388,114027842,114029810,114035625	114021508,114024355,114027456,114027927,114029887,114036193	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr13	109269287	109269317	109269287	-	High_confidence	2	2	7	0.345188	2.521641	chr13	109269042	109269447	LTR|ERV1|HERVH-int	+	chr13	109169998	109269527	STRG.153312.2	-	109169998,109267733,109268785	109201487,109267840,109269527	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr5	55982731	55982755	55982731	-	High_confidence	2	2	10	0.493126	2.921928	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr9	39809843	39809859	39809858	-	High_confidence	3	5	9	0.443814	3.000000	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803253	39810013	STRG.114197.2	-	39803253,39809485,39809730	39803859,39809615,39810013	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr1	171138819	171138835	171138819	-	High_confidence	7	7	12	0.591752	3.188722	chr1	171138712	171138861	SINE|MIR|MIR3	+	chr1	171138284	171138613	STRG.12399.1	-	171138284	171138613	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr2	201122589	201122621	201122589	+	RAMPAGE_only	12	17	39	1.923193	5.028992	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201116238	201136281	STRG.32824.15	+	201116238,201129728,201133028,201135971,201136197	201122747,201130146,201133134,201136107,201136281	0.512821
upper_lobe_of_left_lung_female_adult_53_years	chr10	46554606	46554639	46554606	-	High_confidence	2	2	9	0.443814	3.000000	chr10	46554368	46554805	LTR|LTR|MamRep1527	+	chr10	46549043	46555530	GPRIN2|ENST00000374317.1	-	46549043,46554584,46555374	46550742,46554695,46555530	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr2	113184979	113184991	113184979	+	High_confidence	2	2	7	0.345188	2.584963	chr2	113184992	113185171	SINE|MIR|MIR1_Amn	+	chr2	113185043	113201566	PSD4|ENST00000409656.5	+	113185043,113185364,113185661,113192379,113193047,113193257,113193591,113193858,113195726,113196146,113197563,113197746,113198739,113199082,113201157	113185073,113185440,113186255,113192589,113193128,113193370,113193650,113193948,113195770,113196307,113197634,113197913,113198884,113199226,113201566	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr1	2594081	2594103	2594102	-	High_confidence	3	3	10	0.493126	3.121928	chr1	2593981	2594096	SINE|MIR|MIRb	-	chr1	2592654	2594073	MMEL1|ENST00000469962.1	-	2592654,2592832,2593813	2592720,2592966,2594073	0.800000
upper_lobe_of_left_lung_female_adult_53_years	chr8	144160991	144160992	144160991	+	High_confidence	7	7	11	0.542439	3.121928	chr8	144160811	144161348	LTR|ERVL-MaLR|MLT1E2	-	chr8	144161024	144261927	MROH1|ENST00000528919.5	+	144161024,144163770,144168294,144179454,144180177,144180424,144190783,144191714,144192308,144199121,144200427,144220599,144223107,144238755,144239034,144239322,144239613,144240100,144240569,144240991,144241394,144242368,144242601,144243493,144243862,144244221,144244443,144245155,144247300,144247566,144248876,144250211,144254812,144255508,144258776,144259239,144259910,144260185,144260676,144260906,144261113,144261283,144261654	144161089,144163848,144168440,144179586,144180340,144180523,144190935,144191855,144192401,144199200,144200541,144220673,144223230,144238863,144239179,144239363,144239755,144240153,144240677,144241111,144241517,144242515,144242628,144243616,144243942,144244336,144244539,144245260,144247436,144247679,144249029,144250366,144254978,144255705,144258914,144259354,144260057,144260374,144260832,144261041,144261216,144261349,144261927	0.727273
upper_lobe_of_left_lung_female_adult_53_years	chr3	101692171	101692186	101692171	+	RAMPAGE_only	20	22	38	1.873880	4.345287	chr3	101691892	101692861	LTR|ERVK|LTR5_Hs	+	chr3	101688114	101700893	STRG.43849.5	+	101688114	101700893	0.973684
upper_lobe_of_left_lung_female_adult_53_years	chr2	231072232	231072242	231072232	+	RAMPAGE_only	3	3	7	0.345188	2.807355	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr5	180909572	180909577	180909572	+	High_confidence	39	42	63	3.106696	5.369146	chr5	180909597	180909731	SINE|Alu|FLAM_C	+	chr5	180909572	180948353	BTNL8|ENST00000514448.5	+	180909572,180911338,180947511	180909697,180911614,180948353	0.809524
upper_lobe_of_left_lung_female_adult_53_years	chr2	96638016	96638022	96638016	-	High_confidence	2	2	8	0.394501	2.807355	chr2	96637904	96638061	SINE|MIR|MIRc	-	chr2	96595511	96638309	STRG.25580.7	-	96595511,96601642,96602115,96602752,96604249,96604778,96605319,96608507,96608863,96609498,96610725,96612281,96612461,96612817,96613487,96619358,96619671	96595631,96601776,96602338,96602862,96604380,96604863,96605511,96608664,96609064,96609562,96611138,96612353,96612563,96612934,96613619,96619544,96638309	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr1	156012334	156012347	156012334	-	High_confidence	2	2	8	0.394501	2.521641	chr1	156012306	156012401	SINE|MIR|MIRc	+	chr1	156009048	156013040	SSR2|ENST00000472467.1	-	156009048,156011809	156009650,156013040	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chrX	97119911	97119939	97119930	+	RAMPAGE_only	6	6	19	0.936940	3.747413	chrX	97118912	97120566	LINE|L1|L1PBa1	-	chrX	96685016	97469765	DIAPH2|ENST00000373054.5	+	96685016,96735757,96738585,96758153,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348117,97383908,97429649,97469693	96685190,96735790,96738762,96758258,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247841,97348280,97384044,97429745,97469765	0.578947
upper_lobe_of_left_lung_female_adult_53_years	chr3	50441913	50441914	50441913	-	RAMPAGE_only	6	6	8	0.394501	2.521641	chr3	50441856	50442004	LINE|CR1|L3	+	chr3	50362798	50503423	CACNA2D2|ENST00000423994.6	-	50362798,50364887,50365074,50365355,50365632,50365809,50366010,50366266,50366577,50366830,50367010,50367393,50367641,50367811,50368137,50370319,50373064,50374736,50375643,50375808,50375962,50376113,50377466,50377731,50378007,50378283,50378914,50379091,50379431,50379724,50379967,50380747,50380994,50384195,50387567,50394108,50434312,50476117,50503217	50364806,50364976,50365184,50365482,50365688,50365862,50366163,50366338,50366628,50366919,50367109,50367497,50367704,50367902,50368235,50370380,50373085,50374813,50375705,50375880,50376034,50376188,50377541,50377803,50378097,50378333,50378993,50379199,50379590,50379824,50380018,50380805,50381126,50384337,50387612,50394168,50434429,50476199,50503423	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr12	26832766	26832798	26832766	-	High_confidence	2	3	11	0.542439	2.921928	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26631672	26832781	STRG.141359.2	-	26631672,26655707,26656296,26657706,26658010,26659112,26663684,26665909,26681873,26682573,26686480,26695605,26711172,26715298,26715751,26716143,26722396,26724655,26725649,26790156,26832689	26632059,26655852,26656548,26657892,26658130,26659285,26663846,26666051,26682034,26682673,26686632,26695650,26711268,26715445,26715835,26716242,26722555,26724742,26725765,26790227,26832781	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr3	195688701	195688708	195688701	+	High_confidence	2	2	8	0.394501	2.500000	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688681	195708807	MUC20-OT1|ENST00000627562.2	+	195688681,195689338,195699029,195701379,195708133	195688797,195689438,195699207,195701495,195708807	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr14	31247705	31247735	31247734	+	High_confidence	14	14	46	2.268381	4.879664	chr14	31247713	31250669	LTR|ERV1|HERVH-int	-	chr14	31247656	31248526	STRG.154382.1	+	31247656	31248526	0.695652
upper_lobe_of_left_lung_female_adult_53_years	chr10	133369982	133370017	133370016	-	RAMPAGE_only	4	4	12	0.591752	3.095795	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr19	50249764	50249812	50249811	+	RAMPAGE_only	5	5	10	0.493126	2.921928	chr19	50249856	50250043	SINE|MIR|MIR	+	chr19	50210365	50309790	MYH14|ENST00000596571.5	+	50210365,50217614,50223082,50223246,50225584,50226902,50230524,50231929,50244241,50247003,50248986,50249649,50250514,50252638,50257298,50259143,50260645,50261474,50263311,50266876,50268160,50271408,50271848,50272559,50275990,50276756,50278082,50280036,50280230,50281593,50286481,50289435,50290886,50292260,50293232,50293563,50301660,50307048,50309004,50309639	50210770,50217771,50223110,50223349,50225677,50226966,50230623,50232070,50244337,50247122,50249139,50249823,50250688,50252753,50257486,50259265,50260715,50261635,50263420,50267008,50268367,50271546,50271972,50272731,50276203,50276901,50278289,50280141,50280383,50281842,50286694,50289648,50291048,50292389,50293321,50293687,50301869,50307157,50309177,50309790	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr13	98988460	98988461	98988460	-	RAMPAGE_only	10	11	11	0.542439	2.846439	chr13	98988435	98988530	SINE|MIR|MIR	-	chr13	98793486	98978084	DOCK9|NM_001130048.1	-	98793486,98796205,98797114,98797388,98800287,98804998,98807660,98808639,98809122,98809351,98810168,98824397,98825871,98826829,98829306,98829642,98831347,98831648,98837493,98845923,98848591,98850046,98853407,98855897,98860404,98863018,98863369,98867424,98867927,98868230,98879897,98880546,98881557,98881891,98883041,98883812,98884970,98885707,98886531,98888157,98888359,98888631,98897487,98898178,98901777,98902287,98902971,98904631,98914327,98915328,98920953,98922050,98923301,98925836,98930167,98955434,98977783	98794748,98796213,98797253,98797489,98800478,98805209,98807807,98808675,98809128,98809465,98810291,98824504,98825940,98826887,98829522,98829756,98831530,98831786,98837609,98845991,98848639,98850113,98853522,98856031,98860522,98863132,98863548,98867536,98868011,98868377,98879969,98880672,98881627,98882007,98883131,98883899,98885092,98885831,98886624,98888223,98888547,98888711,98897610,98898261,98901900,98902491,98903112,98904706,98914395,98915503,98921088,98922146,98923371,98925919,98930257,98955551,98978084	0.818182
upper_lobe_of_left_lung_female_adult_53_years	chr16	53445780	53445794	53445780	+	High_confidence	9	10	23	1.134191	4.055958	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.521739
upper_lobe_of_left_lung_female_adult_53_years	chr4	53443308	53443309	53443308	+	RAMPAGE_only	6	6	8	0.394501	2.750000	chr4	53443285	53443418	SINE|MIR|MIRb	+	chr4	53442252	53453131	FIP1L1|ENST00000511055.1	+	53442252,53444047,53452919	53442707,53444103,53453131	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr16	19430567	19430620	19430567	+	RAMPAGE_only	4	4	36	1.775255	4.240157	chr16	19430590	19430808	DNA|hAT-Charlie|Charlie18a	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	0.944444
upper_lobe_of_left_lung_female_adult_53_years	chr14	53217621	53217622	53217621	+	High_confidence	6	6	8	0.394501	2.750000	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217627	53218228	STRG.156211.1	+	53217627	53218228	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr1	36481486	36481535	36481534	-	RAMPAGE_only	4	5	15	0.739689	3.773557	chr1	36481405	36481665	SINE|MIR|MIR	+	chr1	36466095	36482899	STRG.2586.8	-	36466095,36467229,36467557,36467821,36468074,36469155,36469651,36471432,36472065,36472237,36472516,36473434,36473763,36475376,36481477,36482810	36466827,36467311,36467651,36467962,36468221,36469257,36469840,36471646,36472139,36472391,36472686,36473622,36473887,36479516,36481537,36482899	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr8	74599787	74599808	74599787	+	RAMPAGE_only	30	32	65	3.205321	4.848238	chr8	74594235	74600252	LINE|L1|L1PA3	-	chr8	74612856	74613582	STRG.106950.1	+	74612856	74613582	0.784615
upper_lobe_of_left_lung_female_adult_53_years	chr2	227534926	227534933	227534932	+	RAMPAGE_only	6	6	13	0.641064	3.546594	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536332	227561214	STRG.34926.11	+	227536332,227553709	227552117,227561214	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr9	127642418	127642455	127642428	+	High_confidence	204	215	819	40.387045	6.540778	chr9	127642433	127642559	LINE|CR1|L3	+	chr9	127642444	127693289	STRG.119575.1	+	127642444,127651602,127653714,127658374,127660029,127661101,127663204,127665246,127666165,127668079,127669897,127672050,127673180,127675803,127676643,127678430,127680156,127682405,127690774,127692456	127642563,127651652,127653796,127658451,127660108,127661205,127663353,127665331,127666296,127668187,127669958,127672116,127673261,127675942,127676753,127678532,127680242,127682560,127692376,127693289	0.865690
upper_lobe_of_left_lung_female_adult_53_years	chr16	760733	761115	761114	+	High_confidence	139	151	1009	49.756445	6.762270	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.953419
upper_lobe_of_left_lung_female_adult_53_years	chr12	40158520	40158581	40158580	-	High_confidence	113	115	247	12.180220	5.541728	chr12	40158492	40158651	LTR|Gypsy?|LTR85c	-	chr12	40140925	40158591	STRG.142057.1	-	40140925,40144180,40152028,40157853,40158435	40142634,40144304,40152143,40158055,40158591	0.935223
upper_lobe_of_left_lung_female_adult_53_years	chr12	50767986	50768056	50768052	+	RAMPAGE_only	66	70	194	9.566650	5.121464	chr12	50767871	50768172	SINE|Alu|AluSx	-	chr12	50766711	50821122	STRG.143224.2	+	50766711,50780139,50795908,50809455,50814009,50814279,50819634	50768223,50780238,50796009,50809589,50814192,50814439,50821122	0.958763
upper_lobe_of_left_lung_female_adult_53_years	chr8	57462896	57462905	57462904	+	High_confidence	10	14	32	1.578004	4.452820	chr8	57462811	57463216	LTR|ERV1|HERVE_a-int	+	chr8	57462989	57463377	STRG.105248.1	+	57462989	57463377	0.531250
upper_lobe_of_left_lung_female_adult_53_years	chr1	176162936	176162968	176162936	-	RAMPAGE_only	6	7	15	0.739689	3.773557	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.600000
upper_lobe_of_left_lung_female_adult_53_years	chr15	90467553	90467564	90467553	+	RAMPAGE_only	4	4	11	0.542439	3.321928	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.636364
upper_lobe_of_left_lung_female_adult_53_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	54	63	130	6.410642	6.043258	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.846154
upper_lobe_of_left_lung_female_adult_53_years	chr1	227142956	227142973	227142956	-	RAMPAGE_only	6	7	13	0.641064	2.625815	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.846154
upper_lobe_of_left_lung_female_adult_53_years	chr7	22150418	22150440	22150418	-	RAMPAGE_only	3	3	9	0.443814	3.000000	chr7	22150074	22150372	SINE|Alu|AluJb	-	chr7	22139756	22145266	RAPGEF5|ENST00000468825.1	-	22139756,22145043	22140115,22145266	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr1	113759894	113759899	113759894	-	High_confidence	4	4	8	0.394501	2.807355	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr7	37353636	37353651	37353636	-	High_confidence	12	12	44	2.169756	4.726144	chr7	37353223	37353900	LTR|ERV1|LTR12_	-	chr7	36852905	37353668	ELMO1|NM_001206482.1	-	36852905,36861658,36870392,36878009,36887559,36894853,37013298,37096618,37133129,37211385,37213334,37216644,37222614,37224878,37233094,37244355,37259180,37271831,37314849,37315919,37342612,37353031	36855751,36861736,36870475,36878117,36887672,36895017,37013435,37096727,37133234,37211517,37213457,37216695,37222693,37225030,37233194,37244391,37259350,37271882,37314922,37315960,37342763,37353668	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr11	17282813	17282822	17282821	+	RAMPAGE_only	6	6	15	0.739689	3.773557	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.800000
upper_lobe_of_left_lung_female_adult_53_years	chr3	8683403	8683435	8683434	+	High_confidence	8	8	24	1.183503	3.938722	chr3	8681887	8683470	LTR|ERV1|HERVE-int	+	chr3	8682942	8693701	OR7E122P|ENST00000641144.1	+	8682942,8683664,8688181	8683517,8683740,8693701	0.916667
upper_lobe_of_left_lung_female_adult_53_years	chr2	127277068	127277081	127277080	-	RAMPAGE_only	8	8	14	0.690377	3.700440	chr2	127276569	127277409	LINE|L1|HAL1	+	chr2	127257289	127290893	ERCC3|ENST00000646042.1	-	127257289,127259295,127261227,127271335,127272864,127279172,127280446,127286702,127288659,127289336	127257727,127259448,127261346,127271453,127272961,127279375,127280631,127287017,127288864,127290893	0.642857
upper_lobe_of_left_lung_female_adult_53_years	chr2	187513641	187513653	187513652	-	High_confidence	12	12	24	1.183503	3.501398	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	0.916667
upper_lobe_of_left_lung_female_adult_53_years	chr1	33021382	33021417	33021382	-	RAMPAGE_only	2	3	12	0.591752	3.277613	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr14	96451525	96451550	96451534	+	RAMPAGE_only	5	5	18	0.887627	3.454822	chr14	96451524	96451593	LINE|RTE-BovB|MamRTE1	+	chr14	96449769	96488275	STRG.159803.2	+	96449769,96451424,96456346,96458082,96471477,96472686,96478464,96482998,96486897,96487957	96449879,96451570,96456475,96458212,96471606,96472755,96478662,96483219,96487056,96488275	0.944444
upper_lobe_of_left_lung_female_adult_53_years	chr17	77127872	77127877	77127872	+	High_confidence	20	20	35	1.725942	4.862576	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.657143
upper_lobe_of_left_lung_female_adult_53_years	chr2	240022172	240022182	240022172	-	High_confidence	14	14	24	1.183503	3.153572	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	240010541	240021711	STRG.35825.5	-	240010541,240011616,240014768,240018552,240021196	240010631,240011696,240014860,240018639,240021711	0.916667
upper_lobe_of_left_lung_female_adult_53_years	chr5	172958912	172958925	172958924	+	High_confidence	4	4	11	0.542439	3.095795	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr1	46804345	46804370	46804345	+	RAMPAGE_only	4	4	11	0.542439	2.913977	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.818182
upper_lobe_of_left_lung_female_adult_53_years	chr3	11225885	11225910	11225885	-	RAMPAGE_only	4	5	10	0.493126	3.169925	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11206031	11207363	STRG.37704.1	-	11206031,11207279	11206852,11207363	0.600000
upper_lobe_of_left_lung_female_adult_53_years	chr22	30969882	30969926	30969882	+	High_confidence	7	7	16	0.789002	3.773557	chr22	30969850	30969971	SINE|MIR|MIR1_Amn	+	chr22	30969852	30975997	TUG1|ENST00000643280.1	+	30969852,30972923,30975169	30971779,30973587,30975997	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr11	65431767	65432065	65432064	+	RAMPAGE_only	15	16	192	9.468025	6.268836	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr1	173751865	173751906	173751905	+	RAMPAGE_only	2	2	7	0.345188	2.521641	chr1	173751955	173752248	SINE|Alu|AluSc	+	chr1	173714983	173786702	KLHL20|ENST00000209884.4	+	173714983,173716002,173733712,173751763,173753212,173755922,173756975,173766145,173774304,173775633,173782123,173785162	173715078,173716066,173734286,173751922,173753307,173756038,173757159,173766289,173774438,173775842,173782230,173786702	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr11	102397741	102397770	102397741	-	RAMPAGE_only	4	4	20	0.986253	4.121928	chr11	102397661	102397799	DNA|hAT-Charlie|Charlie16a	-	chr11	102396331	102452839	TMEM123|ENST00000361236.7	-	102396331,102401538,102401915,102452523	102398891,102401692,102402206,102452839	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr6	37446388	37446441	37446440	+	RAMPAGE_only	3	3	16	0.789002	3.506891	chr6	37446485	37446803	LINE|CR1|L3	+	chr6	37433219	37481506	CMTR1|ENST00000373451.8	+	37433219,37435623,37443998,37446290,37450250,37451805,37453046,37453239,37458611,37459565,37461548,37461969,37462828,37471020,37471846,37472418,37473469,37474523,37475320,37476125,37477591,37478408,37479146,37480012	37433377,37435762,37444150,37446449,37450343,37451877,37453141,37453312,37458810,37459684,37461645,37462102,37463008,37471077,37471904,37472487,37473601,37474646,37475412,37476194,37477639,37478521,37479255,37481506	0.937500
upper_lobe_of_left_lung_female_adult_53_years	chr13	106561950	106561951	106561950	-	High_confidence	123	125	131	6.459955	6.298712	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.809160
upper_lobe_of_left_lung_female_adult_53_years	chr11	68773414	68773415	68773414	-	RAMPAGE_only	8	8	10	0.493126	3.321928	chr11	68773373	68773449	LINE|CR1|L3	+	chr11	68754619	68815503	CPT1A|ENST00000540367.5	-	68754619,68759568,68760224,68761534,68762626,68773264,68775315,68780639,68781770,68784814,68793314,68794803,68796855,68799217,68803999,68807466,68812436,68815333	68754851,68759661,68760338,68761687,68762761,68773429,68775432,68780745,68781959,68785010,68793402,68794911,68796933,68799355,68804101,68807638,68812576,68815503	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr4	186074252	186074294	186074252	+	High_confidence	2	2	9	0.443814	2.750000	chr4	186074192	186075298	DNA|TcMar-Tigger|Tigger3b	-	chr4	186074231	186084238	STRG.64887.2	+	186074231,186076612,186078839,186082319	186074411,186077060,186079031,186084238	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr8	85378112	85378113	85378112	-	High_confidence	63	64	64	3.156008	3.967312	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.984375
upper_lobe_of_left_lung_female_adult_53_years	chr4	80301327	80301328	80301327	+	RAMPAGE_only	100	102	102	5.029888	5.526407	chr4	80301302	80301442	DNA|TcMar-Tigger|Tigger9b	+	chr4	80335719	80963756	C4orf22|NM_152770.2	+	80335719,80362753,80583092,80869992,80944809,80963516	80335879,80362884,80583183,80870135,80944939,80963756	0.911765
upper_lobe_of_left_lung_female_adult_53_years	chr8	141002226	141002241	141002226	-	High_confidence	2	2	8	0.394501	2.807355	chr8	141002088	141002337	LINE|L2|L2	-	chr8	140879481	141001285	PTK2|ENST00000520045.5	-	140879481,140890542,140948665,141001124	140879637,140890769,140948723,141001285	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr12	5993863	5993886	5993863	-	RAMPAGE_only	3	3	12	0.591752	3.277613	chr12	5993700	5993817	SINE|MIR|MIRc	-	chr12	5948873	6124675	VWF|ENST00000261405.9	-	5948873,5949785,5951843,5952390,5953495,5967485,5968126,5969210,5971598,5976110,5981785,5983149,5985044,5985562,5991818,5993861,5994414,5996001,6011616,6012086,6013480,6016088,6016515,6016753,6018364,6021899,6022739,6023630,6025579,6025905,6029341,6031443,6034687,6036387,6044290,6046722,6052542,6056856,6057848,6062953,6064245,6065136,6071296,6072330,6073618,6075334,6095459,6110373,6110865,6121173,6123141,6124420	5949203,5949883,5951883,5952519,5953594,5967602,5968167,5969391,5971709,5976260,5981991,5983254,5985119,5985665,5992018,5994203,5994607,5996222,6011794,6012130,6013645,6016232,6016656,6016870,6019743,6022035,6022898,6023787,6025693,6026046,6029488,6031578,6034826,6036491,6044451,6046817,6052783,6057072,6058044,6063054,6064384,6065273,6071343,6072442,6073741,6075551,6095584,6110582,6110968,6121338,6123196,6124675	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr6	11394823	11394824	11394823	-	High_confidence	8	9	11	0.542439	3.321928	chr6	11394349	11394840	LTR|ERVL-MaLR|MLT1L	-	chr6	11394442	11394818	STRG.78247.1	-	11394442	11394818	0.818182
upper_lobe_of_left_lung_female_adult_53_years	chr11	17225067	17225068	17225067	+	RAMPAGE_only	14	14	17	0.838315	3.852169	chr11	17224821	17225165	LINE|L2|L2a	+	chr11	17260339	17349980	NUCB2|ENST00000646648.1	+	17260339,17269184,17276007,17282788,17295323,17296103,17301743,17309571,17310824,17311184,17311871,17312027,17315385,17330126,17330901,17337347,17349344	17260501,17269331,17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17337534,17349980	0.705882
upper_lobe_of_left_lung_female_adult_53_years	chr10	72355145	72355176	72355145	-	High_confidence	4	4	17	0.838315	3.807764	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	0.882353
upper_lobe_of_left_lung_female_adult_53_years	chrX	13303406	13303409	13303406	-	High_confidence	4	4	10	0.493126	3.169925	chrX	13303238	13303604	LTR|ERVL-MaLR|THE1B	-	chrX	13266047	13303392	LINC02154|ENST00000412485.1	-	13266047,13287428,13303319	13267335,13287564,13303392	0.600000
upper_lobe_of_left_lung_female_adult_53_years	chr1	39310282	39310353	39310282	+	RAMPAGE_only	7	7	61	3.008071	5.259679	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.901639
upper_lobe_of_left_lung_female_adult_53_years	chr4	86780397	86780417	86780416	+	RAMPAGE_only	2	2	7	0.345188	2.584963	chr4	86780459	86780984	LINE|L1|L1ME1	+	chr4	86635251	86815149	PTPN13|ENST00000511467.1	+	86635251,86672364,86686709,86689004,86693586,86701240,86716529,86717023,86722211,86732399,86732591,86734302,86734736,86735593,86741633,86744965,86750469,86751026,86753008,86758259,86758677,86758941,86762726,86764592,86765394,86766431,86767816,86769768,86770100,86771170,86772777,86774372,86775170,86775441,86780401,86782200,86784464,86785230,86785847,86796873,86799100,86803708,86805278,86807559,86809768,86811045,86814455	86635371,86672543,86686775,86689190,86693674,86701801,86716625,86717117,86722434,86732474,86732766,86734456,86734875,86735746,86741816,86745128,86750887,86751124,86753065,86758349,86758785,86759073,86763190,86764739,86765488,86766517,86767976,86769983,86770199,86771535,86772958,86774531,86775342,86775652,86780472,86782262,86784558,86785368,86785936,86796929,86799204,86803857,86805369,86807897,86809984,86811108,86815149	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr10	65570509	65570522	65570521	+	High_confidence	6	8	14	0.690377	3.392747	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570535	65585775	LINC01515|ENST00000608678.5	+	65570535,65571424,65572934,65581611,65585484	65570759,65571579,65573056,65581673,65585775	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr11	78081866	78081884	78081872	-	RAMPAGE_only	80	127	260	12.821284	5.780787	chr11	78081299	78085065	LTR|ERV1|HERVH-int	+	chr11	78068303	78080219	NDUFC2|ENST00000281031.4	-	78068303,78072997,78079578	78070036,78073141,78080219	0.911538
upper_lobe_of_left_lung_female_adult_53_years	chr6	31186084	31186118	31186117	-	High_confidence	46	47	135	6.657205	6.182688	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31182016	31186544	STRG.80182.1	-	31182016	31186544	0.881481
upper_lobe_of_left_lung_female_adult_53_years	chr20	37344683	37344718	37344717	+	High_confidence	16	16	86	4.240886	5.715653	chr20	37344715	37344779	SINE|MIR|MIRc	+	chr20	37344696	37405432	STRG.190692.2	+	37344696,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.674419
upper_lobe_of_left_lung_female_adult_53_years	chr11	72135675	72135728	72135708	+	High_confidence	17	18	66	3.254634	5.164300	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	0.893939
upper_lobe_of_left_lung_female_adult_53_years	chr13	37091095	37091122	37091121	+	RAMPAGE_only	16	16	42	2.071131	4.753226	chr13	37090806	37091149	DNA|hAT-Charlie|Charlie17b	+	chr13	37105977	37106313	STRG.149540.1	+	37105977	37106313	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr9	113582221	113582240	113582239	+	High_confidence	3	3	9	0.443814	2.641604	chr9	113582216	113582304	SINE|MIR|MIRb	+	chr9	113581635	113597737	RGS3|ENST00000487344.1	+	113581635,113591332,113594429,113594918,113595598,113596767	113584427,113591397,113594531,113594980,113595765,113597737	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chrX	73841834	73841877	73841876	-	High_confidence	6	6	13	0.641064	2.792481	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.923077
upper_lobe_of_left_lung_female_adult_53_years	chr1	110871200	110871210	110871200	+	High_confidence	4	5	8	0.394501	3.000000	chr1	110870731	110871665	LINE|L2|L2b	-	chr1	110871198	110899936	CD53|NM_001040033.1	+	110871198,110873155,110891391,110892344,110894326,110894959,110896652,110897808,110899123	110871259,110873248,110891471,110892533,110894401,110895055,110896733,110897892,110899936	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr2	53794095	53794120	53794095	+	RAMPAGE_only	3	6	11	0.542439	3.027169	chr2	53793849	53794184	LINE|L1|L1PA17	+	chr2	53787079	53818819	ERLEC1|ENST00000378239.5	+	53787079,53794344,53795932,53797514,53797731,53799046,53801396,53801712,53809213,53812948,53814542,53814859,53817897	53787372,53794449,53796013,53797592,53797795,53799081,53801620,53801842,53809273,53813073,53814620,53814935,53818819	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr1	238486003	238486037	238486008	-	High_confidence	3	3	20	0.986253	3.932138	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480383	238486017	LINC01139|NR_015407.1	-	238480383,238485784	238481681,238486017	0.600000
upper_lobe_of_left_lung_female_adult_53_years	chr15	32613831	32613863	32613862	+	High_confidence	7	7	18	0.887627	3.836592	chr15	32613860	32614055	LINE|CR1|L3	+	chr15	32613732	32615111	AC123768.2|ENST00000500941.2	+	32613732,32614108,32614739	32613998,32614202,32615111	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr8	144106392	144106430	144106393	+	High_confidence	5	6	13	0.641064	3.188722	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.615385
upper_lobe_of_left_lung_female_adult_53_years	chr12	6355383	6355386	6355383	-	High_confidence	3	3	9	0.443814	2.947703	chr12	6355373	6355427	LINE|CR1|X6B_LINE	+	chr12	6354404	6355336	SCNN1A|ENST00000539030.5	-	6354404,6354749,6355271	6354555,6354848,6355336	0.555556
upper_lobe_of_left_lung_female_adult_53_years	chr3	48430180	48430183	48430182	-	High_confidence	4	6	9	0.443814	2.500000	chr3	48430133	48430258	SINE|MIR|MIRb	+	chr3	48403853	48430051	PLXNB1|ENST00000296440.10	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48430007	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48430051	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr12	12927733	12927756	12927733	+	High_confidence	17	17	48	2.367006	5.376629	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.583333
upper_lobe_of_left_lung_female_adult_53_years	chr1	75376213	75376224	75376223	-	RAMPAGE_only	5	5	12	0.591752	3.277613	chr1	75375826	75377085	LINE|L1|L1PA2	+	chr1	75204474	75611084	SLC44A5|ENST00000370855.5	-	75204474,75211467,75213704,75213918,75214604,75215753,75217865,75218489,75219256,75219799,75222360,75227725,75233985,75236986,75238512,75242000,75242885,75251209,75274957,75300611,75339581,75396582,75541434,75611039	75206719,75211552,75213793,75213989,75214678,75215857,75217960,75218752,75219344,75219892,75222460,75227857,75234098,75237070,75238636,75242061,75243011,75251294,75275042,75300685,75339630,75396621,75541516,75611084	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr9	123179165	123179221	123179220	-	RAMPAGE_only	13	14	37	1.824567	4.844324	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.918919
upper_lobe_of_left_lung_female_adult_53_years	chr15	65642906	65642951	65642920	+	High_confidence	3	3	10	0.493126	3.321928	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr17	7169068	7169103	7169070	+	High_confidence	10	14	30	1.479379	4.556088	chr17	7168879	7169774	LTR|ERVK|MER11D	+	chr17	7169044	7173864	STRG.173483.1	+	7169044,7173566	7169185,7173864	0.933333
upper_lobe_of_left_lung_female_adult_53_years	chr9	20658338	20658349	20658348	+	High_confidence	19	27	56	2.761507	4.914959	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658338	20793080	STRG.112771.4	+	20658338,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789405	20658826,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20793080	0.642857
upper_lobe_of_left_lung_female_adult_53_years	chr2	9473632	9473653	9473632	+	High_confidence	3	3	8	0.394501	2.750000	chr2	9473556	9473708	DNA|hAT-Charlie|MER5B	-	chr2	9473657	9484548	IAH1|ENST00000496603.5	+	9473657,9478221,9481285,9484431	9473899,9478370,9481447,9484548	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr16	10444105	10444161	10444160	-	RAMPAGE_only	5	5	15	0.739689	3.807355	chr16	10443659	10445502	LTR|ERV1|HERVIP10B3-int	-	chr16	10439985	10498350	STRG.168731.4	-	10439985,10444075,10444317,10470655,10481387	10441844,10444200,10470590,10481351,10498350	0.533333
upper_lobe_of_left_lung_female_adult_53_years	chr1	89272616	89272650	89272627	-	High_confidence	3	4	12	0.591752	3.027169	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89262697	89272804	GBP5|ENST00000443807.1	-	89262697,89263735,89264685,89266345,89266956,89267416,89268728,89269365	89262785,89263948,89264966,89266588,89267153,89267526,89268856,89272804	0.916667
upper_lobe_of_left_lung_female_adult_53_years	chr11	123060124	123060229	123060168	-	High_confidence	49	49	268	13.215785	5.276516	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.544776
upper_lobe_of_left_lung_female_adult_53_years	chr15	57451564	57451598	57451575	+	RAMPAGE_only	12	12	37	1.824567	4.127987	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57420813	57550727	STRG.163726.5	+	57420813,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57421250,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.972973
upper_lobe_of_left_lung_female_adult_53_years	chr1	174874418	174874454	174874418	+	High_confidence	60	68	310	15.286916	6.971898	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.680645
upper_lobe_of_left_lung_female_adult_53_years	chr19	10379686	10379687	10379686	-	High_confidence	6	7	8	0.394501	2.807355	chr19	10379599	10379809	SINE|MIR|MIRb	+	chr19	10368328	10380510	TYK2|ENST00000530829.1	-	10368328,10369756,10378213,10379614,10380379	10368418,10369877,10378426,10379779,10380510	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr14	88041314	88041385	88041384	-	High_confidence	43	54	185	9.122837	5.297505	chr14	88040830	88041535	LINE|L2|L2	+	chr14	88038788	88041377	STRG.159215.1	-	88038788,88040878	88040794,88041377	0.972973
upper_lobe_of_left_lung_female_adult_53_years	chr1	43120008	43120043	43120042	+	High_confidence	3	3	10	0.493126	2.846439	chr1	43114527	43120516	LINE|L1|L1PA2	-	chr1	43120074	43121049	STRG.3202.1	+	43120074	43121049	0.700000
upper_lobe_of_left_lung_female_adult_53_years	chr19	47289956	47289984	47289983	+	High_confidence	6	7	14	0.690377	3.546594	chr19	47289949	47290265	LINE|L1|L1M1	+	chr19	47290022	47307754	C5AR1|ENST00000595501.5	+	47290022,47291977,47307368,47307724	47290061,47292173,47307510,47307754	0.785714
upper_lobe_of_left_lung_female_adult_53_years	chr17	82081606	82081652	82081606	-	High_confidence	30	30	72	3.550509	5.183901	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079167	82080742	FASN|ENST00000580382.1	-	82079167,82079356,82080139,82080369,82080691	82079280,82079608,82080238,82080535,82080742	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr16	1684836	1684855	1684854	+	High_confidence	3	3	9	0.443814	2.503258	chr16	1684761	1684929	SINE|Alu|AluSx1	+	chr16	1685380	1698976	JPT2|ENST00000565851.5	+	1685380,1691842,1697811,1698810	1685587,1691985,1697860,1698976	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr2	231270620	231270691	231270659	+	High_confidence	4	4	22	1.084878	4.277613	chr2	231270419	231270687	LINE|L1|HAL1	-	chr2	231270742	231291435	ARMC9|ENST00000481520.1	+	231270742,231272954,231276635,231278381,231282058,231291352	231271072,231273078,231276775,231278458,231282133,231291435	0.727273
upper_lobe_of_left_lung_female_adult_53_years	chr7	30577983	30578007	30577983	-	RAMPAGE_only	3	3	9	0.443814	2.947703	chr7	30576831	30578376	LTR|ERV1|LOR1-int	-	chr7	30574422	30576742	GARS-DT|ENST00000584023.1	-	30574422,30576563	30574881,30576742	0.555556
upper_lobe_of_left_lung_female_adult_53_years	chr11	65382645	65382646	65382645	-	High_confidence	9	9	13	0.641064	3.546594	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65379452	65382645	SLC25A45|ENST00000529962.5	-	65379452,65379866,65380131,65380533,65381874,65382485	65379561,65379938,65380175,65380622,65381969,65382645	0.846154
upper_lobe_of_left_lung_female_adult_53_years	chr6	30546707	30546819	30546707	-	RAMPAGE_only	11	12	67	3.303946	4.884304	chr6	30546442	30546659	SINE|MIR|MIRb	-	chr6	30541376	30557174	GNL1|ENST00000376621.7	-	30541376,30546695,30547111,30547351,30552466,30553083,30553349,30554574,30554763,30555054,30555554,30556130	30546313,30546836,30547274,30547530,30552661,30553179,30553557,30554646,30554915,30555191,30555720,30557174	0.970149
upper_lobe_of_left_lung_female_adult_53_years	chr11	107441572	107441591	107441590	-	RAMPAGE_only	2	2	7	0.345188	2.584963	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr13	60410080	60410081	60410080	+	RAMPAGE_only	27	29	35	1.725942	4.712319	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60408929	60574144	STRG.151083.2	+	60408929,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573612	60410164,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60574144	0.914286
upper_lobe_of_left_lung_female_adult_53_years	chr2	86826122	86826134	86826127	-	RAMPAGE_only	2	2	10	0.493126	2.641604	chr2	86826118	86826191	SINE|MIR|MIR1_Amn	+	chr2	86815346	86861915	CD8B|ENST00000393759.6	-	86815346,86822320,86844921,86846683,86852996,86858056,86861822	86815718,86822374,86844958,86846773,86853086,86858416,86861915	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr17	32479863	32479866	32479865	+	High_confidence	10	12	16	0.789002	3.773557	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.812500
upper_lobe_of_left_lung_female_adult_53_years	chr8	12530940	12530941	12530940	+	RAMPAGE_only	28	30	36	1.775255	4.572469	chr8	12530906	12531004	LINE|L2|L2b	+	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.527778
upper_lobe_of_left_lung_female_adult_53_years	chr12	2798772	2798794	2798793	+	High_confidence	3	3	13	0.641064	3.584963	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.846154
upper_lobe_of_left_lung_female_adult_53_years	chr3	58136154	58136155	58136154	+	RAMPAGE_only	4	4	7	0.345188	2.807355	chr3	58136192	58136456	SINE|MIR|MIRb	+	chr3	58132077	58172251	FLNB|ENST00000481470.5	+	58132077,58134615,58135978,58138281,58142649,58143472,58145920,58146819,58148205,58148648,58149849,58150104,58153374,58154790,58155959,58159553,58163153,58168439,58170574	58132931,58134772,58136168,58138529,58142752,58143613,58146049,58146993,58148364,58148852,58150002,58150227,58153641,58154928,58156075,58159686,58163330,58169793,58172251	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr13	49495598	49495633	49495598	+	High_confidence	2	2	9	0.443814	2.725481	chr13	49495517	49495796	SINE|Alu|AluSx1	-	chr13	49495609	49528992	PHF11|NM_001040443.2	+	49495609,49506634,49513058,49518017,49520893,49522042,49523174,49524084,49526386,49528510	49496095,49506756,49513166,49518151,49520940,49522107,49523241,49524216,49526458,49528992	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr15	81995610	81995612	81995611	-	High_confidence	5	6	9	0.443814	2.750000	chr15	81995166	82000000	LINE|L1|L1HS	+	chr15	81953302	81995666	AC025219.1|ENST00000559299.1	-	81953302,81954388,81995426	81953507,81954469,81995666	0.555556
upper_lobe_of_left_lung_female_adult_53_years	chr3	183163620	183163621	183163620	-	High_confidence	166	168	175	8.629710	6.059692	chr3	183163266	183163587	SINE|Alu|AluSc5	-	chr3	183153900	183163839	LAMP3|ENST00000476015.1	-	183153900,183162606,183163619	183154391,183162730,183163839	0.937143
upper_lobe_of_left_lung_female_adult_53_years	chr5	139364647	139364648	139364647	+	RAMPAGE_only	6	6	9	0.443814	2.750000	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr3	15341379	15341380	15341379	-	High_confidence	225	245	278	13.708911	6.491897	chr3	15341159	15341407	LINE|L2|L2a	+	chr3	15255649	15341368	SH3BP5|ENST00000408919.7	-	15255649,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341368	0.669065
upper_lobe_of_left_lung_female_adult_53_years	chr8	74599852	74599876	74599852	+	RAMPAGE_only	5	5	13	0.641064	3.546594	chr8	74594235	74600252	LINE|L1|L1PA3	-	chr8	74612856	74613582	STRG.106950.1	+	74612856	74613582	0.615385
upper_lobe_of_left_lung_female_adult_53_years	chr6	79631452	79631468	79631452	+	High_confidence	3	3	12	0.591752	3.188722	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.916667
upper_lobe_of_left_lung_female_adult_53_years	chr12	52056876	52056912	52056876	+	RAMPAGE_only	2	2	6	0.295876	2.584963	chr12	52056859	52057005	DNA|hAT-Tip100|MER91A	-	chr12	52053417	52059503	NR4A1|ENST00000550557.1	+	52053417,52057351,52058687	52057259,52057530,52059503	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr2	9422817	9422818	9422817	-	High_confidence	10	10	14	0.690377	3.521641	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NM_001319068.1	-	9405680,9407448,9408112,9412268,9414177,9418625,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9422660	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr2	227164620	227164621	227164620	+	High_confidence	210	210	249	12.278845	7.023943	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.730924
upper_lobe_of_left_lung_female_adult_53_years	chr1	147173225	147173250	147173225	+	High_confidence	4	4	14	0.690377	3.546594	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr11	58578102	58578145	58578132	-	High_confidence	14	19	69	3.402572	5.504880	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.753623
upper_lobe_of_left_lung_female_adult_53_years	chr11	62600171	62600187	62600186	-	High_confidence	2	2	7	0.345188	2.584963	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr20	62366998	62367004	62366998	-	High_confidence	5	5	10	0.493126	2.947703	chr20	62366948	62367030	LTR|ERV1|LTR35B	-	chr20	62345413	62367270	LAMA5|ENST00000370677.4	-	62345413,62345817,62346080,62346505,62346681,62346912,62351703,62351908,62352241,62353133,62362399,62366948	62345585,62345877,62346215,62346596,62346800,62347028,62351801,62352079,62352360,62353251,62362552,62367270	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chrX	53146253	53146275	53146253	+	RAMPAGE_only	6	6	18	0.887627	3.852169	chrX	53145018	53148476	LINE|L1|L1PA4	+	chrX	53141616	53889748	STRG.201325.3	+	53141616,53889710	53146638,53889748	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr11	17282843	17282886	17282859	+	RAMPAGE_only	2	2	10	0.493126	3.169925	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.600000
upper_lobe_of_left_lung_female_adult_53_years	chr7	6991276	6991289	6991286	+	RAMPAGE_only	45	45	157	7.742083	6.486011	chr7	6989229	6992060	LTR|ERV1|HERVS71-int	-	chr7	7094915	7103669	STRG.91833.1	+	7094915,7097989,7103122	7095131,7098118,7103669	0.643312
upper_lobe_of_left_lung_female_adult_53_years	chr11	65430606	65430905	65430815	+	RAMPAGE_only	50	53	355	17.505984	5.729008	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr11	47214671	47214674	47214671	+	High_confidence	3	3	6	0.295876	2.584963	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214941	47239218	DDB2|NM_000107.2	+	47214941,47216335,47216857,47232813,47234572,47234756,47235269,47237836,47238137,47238799	47215263,47216472,47217049,47232959,47234672,47234934,47235412,47238001,47238183,47239218	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr15	38004722	38004738	38004722	+	High_confidence	2	2	10	0.493126	3.121928	chr15	38003252	38004953	LINE|L1|L1M1	-	chr15	38004745	38025018	LINC02345|ENST00000557883.2	+	38004745,38020191,38024680	38004832,38020532,38025018	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr2	120018825	120018851	120018850	+	High_confidence	8	8	30	1.479379	3.789898	chr2	120018637	120018945	SINE|Alu|AluJo	-	chr2	120019084	120179118	EPB41L5|ENST00000452780.1	+	120019084,120042005,120073177,120074099,120075475,120075700,120076970,120077228,120078492,120087170,120090346,120091554,120093248,120100243,120100698,120127687,120131617,120143002,120146224,120160880,120164835,120167465,120167879,120174840	120019264,120042110,120073220,120074178,120075520,120075753,120077091,120077316,120078581,120087240,120090516,120091661,120093276,120100286,120100814,120127851,120131715,120143131,120146289,120160974,120164910,120167507,120168007,120179118	0.966667
upper_lobe_of_left_lung_female_adult_53_years	chr19	34860358	34860386	34860358	-	High_confidence	1	1	9	0.443814	3.000000	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.555556
upper_lobe_of_left_lung_female_adult_53_years	chr2	179706109	179706278	179706156	-	RAMPAGE_only	4	8	58	2.860133	4.555803	chr2	179706004	179706430	LTR|ERVL|LTR32	+	chr2	179483319	179718356	STRG.31467.11	-	179483319,179518527,179544826,179557677,179715723	179483434,179518638,179557531,179715691,179718356	0.982759
upper_lobe_of_left_lung_female_adult_53_years	chr17	4610469	4610484	4610469	+	High_confidence	8	8	18	0.887627	3.794653	chr17	4610403	4610704	SINE|Alu|AluJb	+	chr17	4610448	4617650	LINC01996|ENST00000573270.1	+	4610448,4616762	4610833,4617650	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr2	43143091	43143114	43143091	-	RAMPAGE_only	9	9	24	1.183503	3.934561	chr2	43142863	43143298	LTR|ERVL-MaLR|MLT1N2	-	chr2	43097745	43102691	LINC02580|ENST00000434020.1	-	43097745,43102034	43098040,43102691	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr14	50756600	50756601	50756600	-	RAMPAGE_only	6	6	8	0.394501	3.000000	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr17	82636614	82636676	82636675	-	High_confidence	7	7	32	1.578004	4.750000	chr17	82636641	82637170	LTR|ERV1|LTR10G	+	chr17	82616014	82636583	WDR45B|ENST00000571835.5	-	82616014,82616523,82617295,82619042,82621608,82625388,82627203,82630920,82636511	82616025,82616645,82617397,82619128,82621799,82625483,82627291,82631022,82636583	0.593750
upper_lobe_of_left_lung_female_adult_53_years	chr19	20423678	20423704	20423697	-	RAMPAGE_only	9	11	29	1.430066	4.185230	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.862069
upper_lobe_of_left_lung_female_adult_53_years	chr4	170226587	170226588	170226587	+	High_confidence	114	125	147	7.248957	5.920405	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.653061
upper_lobe_of_left_lung_female_adult_53_years	chr17	47067498	47067518	47067498	-	High_confidence	120	131	505	24.902879	6.070442	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.932673
upper_lobe_of_left_lung_female_adult_53_years	chr4	76234500	76234536	76234518	-	High_confidence	9	9	33	1.627317	4.386143	chr4	76234334	76234657	LTR|ERV1|MER61A	-	chr4	76158759	76234536	SCARB2|ENST00000638295.1	-	76158759,76163224,76166249,76168402,76169866,76174143,76175790,76176436,76179516,76180953,76195706,76234302	76161751,76163383,76166301,76168476,76169985,76174313,76175910,76176528,76179705,76181101,76195864,76234536	0.939394
upper_lobe_of_left_lung_female_adult_53_years	chr1	196404228	196404273	196404228	-	High_confidence	46	48	167	8.235209	5.810016	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196226117	196404403	STRG.14400.1	-	196226117,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196326889,196331261,196334060,196340570,196342249,196373248,196398671,196404403	0.808383
upper_lobe_of_left_lung_female_adult_53_years	chr15	92914950	92914974	92914973	+	High_confidence	11	11	29	1.430066	4.521641	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.827586
upper_lobe_of_left_lung_female_adult_53_years	chr19	50362794	50362837	50362805	-	High_confidence	11	11	36	1.775255	4.843569	chr19	50362729	50362815	SINE|Alu|AluJr	-	chr19	50361908	50362782	NAPSA|ENST00000597378.1	-	50361908,50362623	50362313,50362782	0.638889
upper_lobe_of_left_lung_female_adult_53_years	chr7	88283837	88283856	88283855	-	RAMPAGE_only	5	6	11	0.542439	2.721928	chr7	88283844	88283877	LINE|RTE-BovB|MamRTE1	-	chr7	88270931	88306880	STRG.97236.1	-	88270931,88280914,88282640,88283813,88290915,88306791	88279628,88281079,88283168,88284271,88291014,88306880	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr1	156252925	156252931	156252925	-	High_confidence	5	5	11	0.542439	3.121928	chr1	156252676	156252900	SINE|MIR|MIRc	-	chr1	156251078	156252555	SMG5|ENST00000473643.1	-	156251078,156252413	156251477,156252555	0.545455
upper_lobe_of_left_lung_female_adult_53_years	chr20	45762073	45762159	45762073	+	High_confidence	71	71	114	5.621640	5.218965	chr20	45759753	45763699	LTR|ERV1|HERVH-int	+	chr20	45762231	45767485	STRG.191247.1	+	45762231,45765157	45762327,45767485	0.973684
upper_lobe_of_left_lung_female_adult_53_years	chr5	131315978	131315998	131315997	+	RAMPAGE_only	2	3	6	0.295876	2.584963	chr5	131315833	131316087	SINE|tRNA-RTE|MamSINE1	+	chr5	131264099	131394667	CDC42SE2|ENST00000505065.1	+	131264099,131315975,131359208,131385542,131390992	131264166,131316144,131359547,131385644,131394667	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr12	52245248	52245249	52245248	+	High_confidence	11	11	11	0.542439	3.277613	chr12	52245047	52245266	SINE|MIR|MIRb	-	chr12	52245438	52252186	KRT7|ENST00000548657.5	+	52245438,52248176,52251776	52245632,52248211,52252186	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr1	207131303	207131304	207131303	+	RAMPAGE_only	9	9	14	0.690377	3.807355	chr1	207131275	207131369	LINE|L2|L2	-	chr1	207104305	207144972	STRG.15326.2	+	207104305,207112898,207114099,207115415,207123921,207124174,207126712,207131545,207134403,207141105,207143817,207144543	207104430,207113167,207114285,207115515,207124007,207124366,207126895,207131740,207134592,207141276,207143993,207144972	0.785714
upper_lobe_of_left_lung_female_adult_53_years	chr2	174410029	174410040	174410029	+	High_confidence	4	4	10	0.493126	2.846439	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410081	174427895	SCRN3|ENST00000549848.5	+	174410081,174422884,174424474,174427712	174410503,174423047,174424649,174427895	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr2	85709871	85709885	85709871	+	High_confidence	3	3	12	0.591752	3.095795	chr2	85709796	85709988	SINE|MIR|MIR	-	chr2	85708951	85710264	STRG.24777.1	+	85708951	85710264	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr1	220090402	220090433	220090402	-	High_confidence	3	3	10	0.493126	2.846439	chr1	220090323	220090490	SINE|Alu|AluJr	-	chr1	220057483	220090462	BPNT1|ENST00000469520.6	-	220057483,220059685,220062756,220067301,220069383,220072849,220073966,220079726,220089685,220090286	220058992,220059791,220062954,220067393,220069432,220072957,220074071,220079854,220089951,220090462	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr1	153967486	153967512	153967486	+	High_confidence	17	17	43	2.120443	4.300072	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.906977
upper_lobe_of_left_lung_female_adult_53_years	chr8	12522682	12522683	12522682	+	RAMPAGE_only	6	7	7	0.345188	2.521641	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr10	72220361	72220369	72220361	+	RAMPAGE_only	4	4	9	0.443814	2.503258	chr10	72220369	72220666	SINE|Alu|AluJo	+	chr10	72223132	72233829	ANAPC16|ENST00000470481.2	+	72223132,72230365,72233000	72224056,72230440,72233829	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr10	27983009	27983078	27983009	-	High_confidence	43	59	142	7.002394	5.749713	chr10	27982876	27983540	LTR|ERVL|LTR50	+	chr10	27812163	27983106	ARMC4|NM_001312689.1	-	27812163,27860624,27862433,27907662,27935009,27936725,27939896,27940562,27944221,27944815,27961567,27968922,27971107,27981465,27982928	27812625,27860846,27862622,27907777,27935252,27936880,27940007,27940805,27944431,27944962,27961715,27969018,27971313,27981582,27983106	0.901408
upper_lobe_of_left_lung_female_adult_53_years	chrX	94416126	94416144	94416126	-	RAMPAGE_only	6	6	10	0.493126	2.947703	chrX	94415609	94416118	LTR|ERVL|ERVL-B4-int	-	chrX	94308849	94600760	STRG.204094.1	-	94308849,94333012,94414738,94529409,94544659,94600106	94326894,94338293,94469084,94529483,94544811,94600760	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr7	154928492	154928507	154928503	+	High_confidence	45	45	86	4.240886	5.656907	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.953488
upper_lobe_of_left_lung_female_adult_53_years	chr7	104926544	104926545	104926544	-	High_confidence	14	14	15	0.739689	3.664498	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104911915	104926630	LHFPL3-AS2|ENST00000453666.2	-	104911915,104915705,104917559,104920384,104926452	104912076,104915827,104917980,104920425,104926630	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	7	7	7	0.345188	2.807355	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr15	57516472	57516497	57516496	+	RAMPAGE_only	9	9	21	1.035565	4.021928	chr15	57516424	57516656	DNA|hAT-Charlie|MER58A	-	chr15	57420813	57550727	STRG.163726.5	+	57420813,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57421250,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.952381
upper_lobe_of_left_lung_female_adult_53_years	chr11	7905657	7905692	7905657	-	High_confidence	3	3	13	0.641064	3.584963	chr11	7901509	7905722	LTR|ERVK|HERVK3-int	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.692308
upper_lobe_of_left_lung_female_adult_53_years	chr17	78632047	78632064	78632063	-	High_confidence	3	3	7	0.345188	2.521641	chr17	78632006	78632221	DNA|hAT-Charlie|MER1A	+	chr17	78608088	78632064	LINC02081|ENST00000650214.1	-	78608088,78624191,78630031,78631948	78609113,78624315,78630430,78632064	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr12	10553364	10553365	10553364	+	High_confidence	117	125	139	6.854456	6.129395	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.762590
upper_lobe_of_left_lung_female_adult_53_years	chr7	116499337	116499338	116499337	+	High_confidence	14	14	15	0.739689	3.324863	chr7	116499174	116499371	SINE|MIR|MIRb	-	chr7	116499339	116506353	STRG.99521.1	+	116499339,116499840,116500259,116505970	116499341,116499931,116500447,116506353	0.933333
upper_lobe_of_left_lung_female_adult_53_years	chrX	94445921	94445970	94445969	-	RAMPAGE_only	3	3	7	0.345188	2.807355	chrX	94445385	94446786	LTR|ERVL|ERVL-B4-int	+	chrX	94308849	94600760	STRG.204094.1	-	94308849,94333012,94414738,94529409,94544659,94600106	94326894,94338293,94469084,94529483,94544811,94600760	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr20	44887709	44887729	44887709	+	RAMPAGE_only	3	4	12	0.591752	2.792481	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885751	44901756	YWHAB|ENST00000445830.1	+	44885751,44886878,44887647,44901530	44885886,44886978,44887742,44901756	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr7	76728928	76728929	76728928	-	High_confidence	4	4	6	0.295876	2.584963	chr7	76728485	76734513	LINE|L1|L1PA3	+	chr7	76696733	76728907	STRG.96407.1	-	76696733,76728465	76697073,76728907	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr5	133089676	133089678	133089677	+	RAMPAGE_only	18	22	29	1.430066	4.556088	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr7	150308273	150308281	150308280	-	RAMPAGE_only	29	29	63	3.106696	4.814165	chr7	150307703	150312283	LTR|ERV1|HERVH-int	+	chr7	150247211	150302980	ACTR3C|NM_001164459.1	-	150247211,150248947,150284752,150286366,150289449,150293311,150295251,150302841	150247569,150249054,150284845,150286540,150289593,150293419,150295347,150302980	0.825397
upper_lobe_of_left_lung_female_adult_53_years	chr6	131326884	131326945	131326897	-	High_confidence	83	84	218	10.750154	6.336611	chr6	131326790	131326938	LTR|ERV1|HERVH-int	+	chr6	131247397	131326925	STRG.87792.2	-	131247397,131283892,131284784,131324733	131283835,131284741,131296766,131326925	0.986239
upper_lobe_of_left_lung_female_adult_53_years	chr22	41544711	41544759	41544753	-	High_confidence	10	10	29	1.430066	4.487123	chr22	41544684	41544805	LINE|L2|L2	+	chr22	41525798	41544606	POLR3H|NM_001282884.1	-	41525798,41530686,41532093,41532658,41540698,41543990,41544510	41529336,41530888,41532157,41532745,41540795,41544121,41544606	0.965517
upper_lobe_of_left_lung_female_adult_53_years	chrX	48683361	48683363	48683362	+	High_confidence	29	54	54	2.662882	5.156889	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr2	31542028	31542063	31542032	-	RAMPAGE_only	10	10	35	1.725942	4.210765	chr2	31541502	31542215	LINE|L1|L1M1	+	chr2	31523764	31533718	STRG.20955.1	-	31523764,31529306,31531370,31533602	31526262,31529457,31531472,31533718	0.914286
upper_lobe_of_left_lung_female_adult_53_years	chr20	37297344	37297345	37297344	+	High_confidence	6	6	6	0.295876	2.584963	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr16	20736862	20736883	20736882	-	RAMPAGE_only	6	6	10	0.493126	2.921928	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr14	85934671	85934678	85934677	+	High_confidence	4	4	8	0.394501	3.000000	chr14	85934517	85934812	LTR|ERV1|LTR12F	+	chr14	85934682	85934975	STRG.159128.1	+	85934682	85934975	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr4	121074204	121074242	121074235	+	High_confidence	28	30	121	5.966828	5.569036	chr4	121073822	121075070	LINE|L2|L2c	-	chr4	121074313	121074695	STRG.61450.1	+	121074313	121074695	0.710744
upper_lobe_of_left_lung_female_adult_53_years	chr12	6813568	6813576	6813575	+	High_confidence	11	12	35	1.725942	4.195909	chr12	6813405	6813751	LINE|L1|L1ME4b	-	chr12	6813578	6815808	STRG.138752.4	+	6813578,6814141,6814758,6815730	6813602,6814463,6814992,6815808	0.800000
upper_lobe_of_left_lung_female_adult_53_years	chr21	35984704	35984710	35984704	-	RAMPAGE_only	6	6	10	0.493126	2.947703	chr21	35984693	35984834	SINE|MIR|MIR	-	chr21	35943410	35988171	STRG.194481.1	-	35943410,35970074,35981750,35984571,35988129	35943613,35970167,35981916,35984830,35988171	0.800000
upper_lobe_of_left_lung_female_adult_53_years	chr22	40713897	40713916	40713897	-	High_confidence	3	5	12	0.591752	3.277613	chr22	40713658	40713960	SINE|Alu|AluSq2	-	chr22	40713393	40714783	STRG.196922.1	-	40713393	40714783	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr11	108224074	108224075	108224074	+	High_confidence	25	25	37	1.824567	4.040234	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.810811
upper_lobe_of_left_lung_female_adult_53_years	chr11	64318707	64318734	64318707	+	High_confidence	4	4	14	0.690377	3.180833	chr11	64318595	64318908	SINE|Alu|AluSx	-	chr11	64318087	64321811	PRDX5|ENST00000265462.8	+	64318087,64319733,64320660,64320864,64321006,64321585	64318386,64319868,64320792,64320903,64321068,64321811	0.928571
upper_lobe_of_left_lung_female_adult_53_years	chr10	122132474	122132481	122132474	+	RAMPAGE_only	4	5	8	0.394501	2.521641	chr10	122132263	122132559	SINE|Alu|AluSq2	+	chr10	122127021	122204183	STRG.128013.11	+	122127021,122132608,122195039,122201304	122127142,122132734,122201259,122204183	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr13	109268998	109269046	109269011	-	High_confidence	556	558	1578	77.815332	6.662168	chr13	109265521	109269052	LTR|ERV1|HERVH-int	+	chr13	109169998	109269527	STRG.153312.2	-	109169998,109267733,109268785	109201487,109267840,109269527	0.767427
upper_lobe_of_left_lung_female_adult_53_years	chr5	38881665	38881673	38881672	+	RAMPAGE_only	3	3	7	0.345188	2.584963	chr5	38881676	38881753	SINE|tRNA-Deu|AmnSINE2	+	chr5	38871841	38889387	STRG.67019.6	+	38871841,38883826,38885348,38886038	38881764,38884111,38885484,38889387	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr6	127330831	127330836	127330835	-	High_confidence	6	7	15	0.739689	3.906891	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290109	127330900	STRG.87327.15	-	127290109,127327001,127330808	127314896,127327144,127330900	0.733333
upper_lobe_of_left_lung_female_adult_53_years	chr2	87469947	87469950	87469949	+	High_confidence	79	139	149	7.347582	4.541192	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87469315	87470851	STRG.25102.1	+	87469315	87470851	0.812081
upper_lobe_of_left_lung_female_adult_53_years	chr20	48679360	48679394	48679393	-	RAMPAGE_only	2	2	8	0.394501	2.521641	chr20	48679185	48679349	SINE|MIR|MIR	-	chr20	48624251	48827883	PREX1|ENST00000371941.3	-	48624251,48627547,48627860,48629448,48630727,48632276,48632495,48634675,48636462,48637710,48639765,48642167,48642406,48644408,48645850,48649299,48649995,48650893,48651395,48652585,48653360,48655289,48657039,48658135,48659918,48666282,48676192,48679359,48679650,48681234,48688656,48690946,48692671,48700752,48708259,48726289,48734545,48745024,48747808,48827641	48625927,48627615,48627963,48629621,48630794,48632391,48632639,48634775,48636683,48637752,48639894,48642258,48642489,48644497,48646057,48649576,48650206,48651055,48651583,48652706,48653497,48655375,48657188,48658228,48660061,48666355,48676268,48679409,48679754,48681335,48688804,48691096,48692790,48700886,48708421,48726391,48734650,48745147,48747880,48827883	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr20	50172401	50172431	50172401	+	High_confidence	2	2	8	0.394501	2.521641	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr17	32863013	32863046	32863045	-	High_confidence	3	4	8	0.394501	2.750000	chr17	32862868	32863012	DNA|hAT-Charlie|MER5B	-	chr17	32492608	32863043	MYO1D|ENST00000394649.8	-	32492608,32605086,32638721,32653842,32654476,32659114,32711987,32721022,32738252,32745210,32748935,32755491,32760289,32760481,32764877,32767635,32771124,32772788,32775863,32778479,32780575,32792463,32794192,32862903	32494915,32605241,32638835,32653947,32654621,32659338,32712195,32721189,32738385,32745285,32749006,32755662,32760404,32760627,32765081,32767752,32771220,32772842,32776029,32778573,32780784,32792591,32794299,32863043	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr3	187024609	187024627	187024618	+	High_confidence	2	2	10	0.493126	2.947703	chr3	187024583	187024927	LINE|L1|L1MC5a	+	chr3	187024687	187042927	ST6GAL1|ENST00000416235.5	+	187024687,187038741,187042653	187024858,187038873,187042927	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr2	208251431	208251447	208251431	-	RAMPAGE_only	2	2	8	0.394501	2.807355	chr2	208251248	208251382	SINE|Alu|FLAM_A	-	chr2	208236226	208254303	IDH1|NM_001282387.1	-	208236226,208239070,208239862,208241993,208243426,208245318,208248368,208251429,208253885,208254030	208237169,208239233,208240003,208242145,208243604,208245424,208248660,208251567,208253959,208254303	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr17	28234014	28234054	28234045	-	High_confidence	20	22	139	6.854456	5.995012	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232319	28234033	STRG.174792.1	-	28232319,28233917	28233342,28234033	0.863309
upper_lobe_of_left_lung_female_adult_53_years	chr2	120100766	120100813	120100766	+	RAMPAGE_only	6	6	23	1.134191	4.055958	chr2	120100735	120100772	LINE|CR1|L3b	-	chr2	120019147	120105115	STRG.27091.6	+	120019147,120042005,120073177,120074099,120075700,120076970,120077228,120078492,120087170,120090346,120091554,120093248,120100243,120100698,120104059	120019264,120042110,120073220,120075520,120075753,120077091,120077316,120078581,120087240,120090516,120091661,120093276,120100286,120100814,120105115	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr20	50172537	50172590	50172589	+	High_confidence	8	8	33	1.627317	4.983788	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172589	50176671	LINC01273|ENST00000411453.2	+	50172589,50172922,50176280	50172788,50173017,50176671	0.575758
upper_lobe_of_left_lung_female_adult_53_years	chr20	50267469	50267502	50267477	+	High_confidence	5	5	19	0.936940	3.892407	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr11	77142397	77142400	77142397	+	RAMPAGE_only	3	3	8	0.394501	2.750000	chr11	77142426	77142547	SINE|MIR|MIRb	+	chr11	77128301	77214954	MYO7A|ENST00000409619.6	+	77128301,77130588,77139400,77142708,77147797,77155906,77156659,77156861,77157278,77158276,77159446,77160162,77160972,77162119,77162852,77166055,77172747,77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587,77189343,77190019,77190696,77192050,77194353,77197480,77198494,77199648,77201447,77202299,77203059,77204075,77205461,77206096,77207288,77208429,77208696,77211151,77211820,77212951,77213859,77214606	77128489,77130652,77139480,77142822,77147950,77156091,77156781,77157004,77157392,77158430,77159523,77160282,77161115,77162330,77162988,77166162,77172885,77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184715,77189470,77190139,77190870,77192278,77194524,77197598,77198621,77199818,77201638,77202424,77203217,77204229,77205617,77206202,77207402,77208517,77208803,77211337,77211937,77213035,77213979,77214954	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr19	40751531	40751533	40751532	-	High_confidence	3	5	8	0.394501	3.000000	chr19	40751529	40751903	LINE|L2|L2b	+	chr19	40740855	40750553	C19orf54|ENST00000469741.6	-	40740855,40741693,40742514,40743914,40744066,40744558,40745129,40749480,40750284	40741439,40741864,40742770,40743975,40744196,40744683,40745198,40749607,40750553	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr6	118651542	118651602	118651592	-	High_confidence	45	45	220	10.848779	6.445032	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.986364
upper_lobe_of_left_lung_female_adult_53_years	chr2	109546070	109546078	109546077	-	RAMPAGE_only	3	3	7	0.345188	2.584963	chr2	109545815	109546035	LINE|L2|L2a	-	chr2	109542796	109613657	SEPT10|NM_001321513.1	-	109542796,109553086,109564365,109565762,109567814,109574580,109585125,109585720,109593050,109613111	109546237,109553219,109564534,109565859,109567976,109574767,109585321,109585838,109593119,109613657	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr6	27367605	27367613	27367612	-	RAMPAGE_only	6	7	10	0.493126	2.725481	chr6	27367435	27367797	LTR|ERVL-MaLR|MSTA	-	chr6	27357822	27371525	ZNF204P|NR_002722.2	-	27357822,27363178,27367516,27370135	27360221,27363302,27367612,27371525	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr4	94234039	94234074	94234039	+	RAMPAGE_only	2	4	9	0.443814	3.000000	chr4	94234038	94234182	SINE|MIR|MIR3	-	chr4	94208083	94289899	SMARCAD1|ENST00000394961.6	+	94208083,94208345,94213034,94226118,94233953,94236951,94240905,94249653,94250751,94252615,94264706,94270727,94273616,94274737,94274889,94276338,94277021,94278421,94278615,94278922,94280591,94281471,94283120,94284959,94289472	94208242,94208584,94213152,94226296,94234122,94237018,94241006,94249755,94250833,94253007,94264906,94270818,94273716,94274797,94274965,94276474,94277159,94278517,94278733,94279050,94280780,94281590,94283303,94285069,94289899	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr8	57462775	57462818	57462775	+	High_confidence	18	18	63	3.106696	5.214755	chr8	57462811	57463216	LTR|ERV1|HERVE_a-int	+	chr8	57462989	57463377	STRG.105248.1	+	57462989	57463377	0.523810
upper_lobe_of_left_lung_female_adult_53_years	chr1	20685262	20685307	20685269	-	High_confidence	4	4	26	1.282128	4.251629	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.923077
upper_lobe_of_left_lung_female_adult_53_years	chr2	179519037	179519132	179519112	-	RAMPAGE_only	38	41	227	11.193967	6.681221	chr2	179518985	179519149	SINE|Alu|AluJo	-	chr2	179480893	179536503	ZNF385B|ENST00000495289.1	-	179480893,179483271,179518527,179536335	179481156,179483434,179518638,179536503	0.691630
upper_lobe_of_left_lung_female_adult_53_years	chr2	11345419	11345437	11345436	-	High_confidence	3	3	11	0.542439	3.121928	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11179758	11345407	ROCK2|NM_001321643.1	-	11179758,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345407	0.545455
upper_lobe_of_left_lung_female_adult_53_years	chr3	188153209	188153229	188153209	+	High_confidence	3	3	7	0.345188	2.584963	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153874	188406278	LPP|ENST00000430340.5	+	188153874,188225404,188312834,188406111	188154021,188225527,188312918,188406278	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr4	141332616	141332617	141332616	-	High_confidence	41	41	45	2.219068	4.180130	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.933333
upper_lobe_of_left_lung_female_adult_53_years	chr10	79556921	79556922	79556921	+	High_confidence	14	15	15	0.739689	3.773557	chr10	79556846	79556922	SINE|MIR|MIR3	+	chr10	79556996	79559508	STRG.125164.6	+	79556996,79558051,79558885,79559311	79557585,79558129,79559005,79559508	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr9	89479889	89479890	89479889	-	High_confidence	122	123	129	6.361329	4.939175	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	0.891473
upper_lobe_of_left_lung_female_adult_53_years	chr3	33864052	33864111	33864052	+	High_confidence	2	2	14	0.690377	3.521641	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33863895	33866468	PDCD6IP|ENST00000473593.1	+	33863895,33865242,33866350	33864129,33865430,33866468	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr20	45076330	45076370	45076369	+	RAMPAGE_only	3	3	13	0.641064	3.418296	chr20	45076309	45076434	SINE|MIR|MIR3	-	chr20	44966552	45079959	STRG.191135.2	+	44966552,44972077,44974099,44981828,44987131,44995089,44997168,45000391,45001166,45024972,45075017	44966603,44973433,44978571,44981943,44987296,44995257,44997306,45000520,45001353,45025130,45079959	0.923077
upper_lobe_of_left_lung_female_adult_53_years	chr10	19749770	19749779	19749778	+	RAMPAGE_only	10	14	25	1.232816	4.643856	chr10	19749477	19750269	LTR|ERVL|MER54B	+	chr10	19816238	20289856	PLXDC2|ENST00000377252.4	+	19816238,20001774,20046868,20068169,20143294,20147783,20164467,20176998,20177327,20211668,20217425,20219063,20245344,20279702	19817191,20001986,20047015,20068239,20143417,20147902,20164567,20177094,20177409,20211729,20217576,20219102,20245505,20289856	0.760000
upper_lobe_of_left_lung_female_adult_53_years	chr9	340288	340309	340308	+	RAMPAGE_only	4	5	8	0.394501	2.521641	chr9	340339	340643	SINE|Alu|AluSz6	+	chr9	366250	465255	DOCK8|ENST00000382329.1	+	366250,368017,370229,371427,372184,376209,376976,379770,382512,386330,390470,396784,399145,404917,406929,414781,418067,420400,420948,422047,426884,428361,429701,432165,433874,434782,439244,441285,441874,443426,446369,449783,452010,463516,464158	366552,368300,370300,371566,372286,376305,377211,379935,382685,386426,390566,396934,399259,405073,407069,414951,418207,420583,421078,422135,426981,428496,429854,432324,433975,434975,439388,441417,442009,443516,446606,449927,452117,463687,465255	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr17	8310240	8310257	8310240	+	High_confidence	3	4	13	0.641064	3.334679	chr17	8310278	8310383	LINE|CR1|X7B_LINE	+	chr17	8310240	8312388	ARHGEF15|ENST00000583529.1	+	8310240,8310827,8311990	8310343,8310863,8312388	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr4	185287501	185287504	185287503	+	RAMPAGE_only	6	10	14	0.690377	3.392747	chr4	185287477	185287662	DNA|hAT-Charlie|MER3	+	chr4	185295826	185363510	SNX25|ENST00000512853.5	+	185295826,185310634,185320732,185323527,185332594,185339378,185341975,185346536,185353484,185357670,185361923,185362610,185363384	185296030,185310816,185320864,185323800,185332759,185339510,185342116,185346650,185353602,185357737,185362105,185362711,185363510	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr2	159382560	159382567	159382566	-	RAMPAGE_only	6	6	12	0.591752	3.251629	chr2	159382314	159382523	SINE|MIR|MIRb	-	chr2	159318978	159616569	BAZ2B|ENST00000392782.5	-	159318978,159324810,159325652,159332539,159336941,159337566,159347485,159348677,159349006,159349707,159373044,159374690,159382558,159383605,159385154,159386352,159389344,159395768,159397344,159398828,159400598,159404848,159405021,159412334,159428310,159429199,159430862,159432756,159438302,159439008,159446781,159448241,159453612,159478574,159555822,159616241	159320418,159324954,159325918,159332686,159337077,159337772,159347646,159348833,159349280,159350357,159373189,159374753,159382802,159383680,159385369,159386607,159389485,159395834,159397389,159398894,159400664,159404910,159405114,159412545,159428419,159429260,159431156,159433363,159438695,159439212,159446975,159448403,159453801,159478721,159555865,159616569	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr12	40356148	40356185	40356184	+	RAMPAGE_only	10	10	30	1.479379	4.112821	chr12	40356230	40356373	LINE|L2|L2b	+	chr12	40346846	40368879	LRRK2|ENST00000636518.1	+	40346846,40348408,40351538,40354298,40356114,40359259,40363401,40364841,40367005,40367643	40346923,40348509,40351733,40354492,40356187,40359444,40363554,40365050,40367059,40368879	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr2	177499693	177499717	177499713	+	RAMPAGE_only	2	3	10	0.493126	3.169925	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr22	50541367	50541389	50541388	+	RAMPAGE_only	4	4	13	0.641064	3.700440	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	0.923077
upper_lobe_of_left_lung_female_adult_53_years	chrX	19589266	19589288	19589266	-	RAMPAGE_only	1	1	8	0.394501	2.807355	chrX	19588985	19589317	LINE|L2|L2c	+	chrX	19534006	19670998	SH3KBP1|ENST00000379716.5	-	19534006,19537716,19541924,19545921,19549973,19569102,19588642,19592066,19594948,19607937,19631863,19645399,19670861	19536458,19537780,19542193,19546050,19550083,19569188,19588802,19592147,19595000,19608045,19631958,19645475,19670998	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr9	19126400	19126436	19126435	-	RAMPAGE_only	3	4	13	0.641064	3.546594	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19125505	19127475	PLIN2|ENST00000475923.1	-	19125505,19127418	19126448,19127475	0.615385
upper_lobe_of_left_lung_female_adult_53_years	chr8	29140064	29140110	29140083	-	RAMPAGE_only	2	2	11	0.542439	2.921928	chr8	29139958	29140038	DNA|TcMar-Mariner|MADE1	-	chr8	29067278	29263073	KIF13B|ENST00000524189.5	-	29067278,29071619,29075280,29092744,29099132,29108138,29109433,29109917,29113462,29116830,29118867,29122590,29123365,29124023,29126481,29127121,29130532,29132307,29134039,29140062,29140467,29142156,29146377,29147391,29148576,29150296,29155725,29160732,29165661,29167372,29176067,29177465,29180103,29181918,29186291,29188514,29190996,29196186,29245345,29262979	29070766,29072316,29075343,29092878,29099241,29108192,29109511,29110070,29113555,29117007,29118992,29122646,29123492,29124123,29126511,29127268,29130665,29132465,29134210,29140191,29140617,29142303,29146540,29147602,29148767,29150383,29155856,29160867,29165772,29167585,29176179,29177578,29180238,29182006,29186472,29188607,29191057,29196199,29245439,29263073	0.636364
upper_lobe_of_left_lung_female_adult_53_years	chr4	48546113	48546140	48546113	-	High_confidence	4	4	10	0.493126	3.121928	chr4	48546053	48546089	LINE|CR1|X7C_LINE	-	chr4	48521093	48546759	FRYL|ENST00000513401.5	-	48521093,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066	48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546759	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr1	20639954	20639989	20639988	+	RAMPAGE_only	2	3	7	0.345188	2.807355	chr1	20640002	20640112	LINE|L2|L2b	+	chr1	20638128	20651316	PINK1|ENST00000492302.1	+	20638128,20644489,20645559,20648504,20650433	20639992,20644672,20645723,20649231,20651316	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr7	55538663	55538664	55538663	-	High_confidence	7	9	9	0.443814	2.641604	chr7	55538614	55538881	LINE|L1|L1ME4b	+	chr7	55471967	55538660	VOPP1|ENST00000625836.2	-	55471967,55492281,55497612,55521071,55538612	55473045,55492418,55497690,55521130,55538660	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr21	34512192	34512220	34512209	-	High_confidence	9	9	40	1.972505	5.103056	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.775000
upper_lobe_of_left_lung_female_adult_53_years	chr21	33931211	33931225	33931224	+	High_confidence	3	3	6	0.295876	2.584963	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931162	33938372	LINC00649|ENST00000599421.1	+	33931162,33938224	33931742,33938372	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr15	89999217	89999229	89999228	+	RAMPAGE_only	15	15	45	2.219068	5.019061	chr15	89998992	89999393	LINE|L2|L2c	+	chr15	90001391	90082200	ZNF710|ENST00000268154.8	+	90001391,90067109,90073070,90074115,90079659	90001614,90068595,90073262,90074290,90082200	0.866667
upper_lobe_of_left_lung_female_adult_53_years	chr11	57794056	57794070	57794069	+	RAMPAGE_only	3	4	6	0.295876	2.584963	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr22	32059151	32059175	32059169	+	High_confidence	8	8	21	1.035565	3.820889	chr22	32059153	32059234	SINE|Alu|AluSz6	+	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	0.952381
upper_lobe_of_left_lung_female_adult_53_years	chr2	29175401	29175402	29175401	+	High_confidence	9	9	11	0.542439	3.459432	chr2	29175307	29175605	LINE|CR1|L3	+	chr2	29175362	29181758	CLIP4|ENST00000481628.1	+	29175362,29181571	29175600,29181758	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr2	118952982	118952985	118952982	-	High_confidence	8	8	18	0.887627	3.947703	chr2	118952839	118953399	LTR|ERV1|LTR10E	-	chr2	118949305	118952983	AC013457.1|ENST00000556770.1	-	118949305,118952589	118949922,118952983	0.944444
upper_lobe_of_left_lung_female_adult_53_years	chr11	16795308	16795323	16795322	-	High_confidence	3	3	9	0.443814	3.000000	chr11	16795277	16795510	LINE|L1|L1MB2	+	chr11	16791170	16795323	PLEKHA7|ENST00000525177.1	-	16791170,16794487,16794909	16791202,16794714,16795323	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chrX	15602157	15602158	15602157	-	High_confidence	6	6	7	0.345188	2.584963	chrX	15602053	15602111	LINE|CR1|L3	-	chrX	15594886	15602148	ACE2|ENST00000484756.1	-	15594886,15600725,15601955	15595003,15601014,15602148	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr6	28354137	28354138	28354137	-	High_confidence	11	11	17	0.838315	4.000000	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324736	28354195	ZSCAN31|ENST00000396838.6	-	28324736,28327382,28329302,28336789,28337755,28341745,28353861,28354130	28326854,28327533,28329714,28336943,28337893,28341792,28353952,28354195	0.588235
upper_lobe_of_left_lung_female_adult_53_years	chr2	190912688	190912689	190912688	+	RAMPAGE_only	10	10	15	0.739689	3.521641	chr2	190912567	190912723	SINE|MIR|MIR3	-	chr2	190895651	190924592	STRG.32138.4	+	190895651,190900563,190901946,190905003,190910262,190921023,190921144,190923916,190924542	190895725,190900693,190902026,190905167,190920248,190921056,190921203,190923983,190924592	0.933333
upper_lobe_of_left_lung_female_adult_53_years	chr6	152657948	152657967	152657948	+	High_confidence	2	3	9	0.443814	3.000000	chr6	152657888	152658335	LTR|ERVL-MaLR|MLT1C	-	chr6	152657937	152668421	STRG.89911.1	+	152657937,152667598,152668055	152658244,152667680,152668421	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr1	21227167	21227176	21227167	-	RAMPAGE_only	2	2	6	0.295876	2.584963	chr1	21227023	21227146	SINE|Alu|AluJr4	-	chr1	21219813	21222081	ECE1|ENST00000531334.1	-	21219813,21221746	21220131,21222081	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	22	22	23	1.134191	3.572624	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.956522
upper_lobe_of_left_lung_female_adult_53_years	chr17	41521762	41521776	41521762	-	High_confidence	3	3	7	0.345188	2.521641	chr17	41521635	41521806	SINE|MIR|MIRb	+	chr17	41513745	41521774	KRT15|ENST00000474031.5	-	41513745,41515884,41516103,41516807,41518329,41521684	41515692,41516010,41516265,41516964,41518461,41521774	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr17	59620040	59620081	59620043	+	High_confidence	10	12	39	1.923193	4.553652	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619942	59651316	CLTC|ENST00000584313.5	+	59619942,59644275,59648239,59651202	59620173,59644483,59648401,59651316	0.846154
upper_lobe_of_left_lung_female_adult_53_years	chr6	27367571	27367582	27367581	-	RAMPAGE_only	3	3	8	0.394501	2.521641	chr6	27367435	27367797	LTR|ERVL-MaLR|MSTA	-	chr6	27357822	27371525	ZNF204P|NR_002722.2	-	27357822,27363178,27367516,27370135	27360221,27363302,27367612,27371525	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr2	37973966	37973967	37973966	+	High_confidence	7	7	8	0.394501	2.807355	chr2	37973395	37973996	LINE|L2|L2a	-	chr2	37974690	37989610	RMDN2|ENST00000496735.1	+	37974690,37981282,37989540	37975314,37981343,37989610	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr2	11201309	11201383	11201309	-	RAMPAGE_only	3	3	18	0.887627	3.969816	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.944444
upper_lobe_of_left_lung_female_adult_53_years	chr5	34244753	34244781	34244753	-	High_confidence	6	6	26	1.282128	4.469670	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.692308
upper_lobe_of_left_lung_female_adult_53_years	chr6	75891303	75891305	75891304	+	RAMPAGE_only	3	6	8	0.394501	2.750000	chr6	75891350	75891661	SINE|Alu|AluY	+	chr6	75890209	75908560	MYO6|ENST00000430435.1	+	75890209,75891227,75892529,75894813,75895230,75907604,75908495	75890265,75891306,75892690,75894840,75895260,75907708,75908560	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr5	154287434	154287470	154287469	+	High_confidence	63	64	125	6.164079	5.682238	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	0.944000
upper_lobe_of_left_lung_female_adult_53_years	chr15	57402037	57402038	57402037	+	RAMPAGE_only	6	6	6	0.295876	2.584963	chr15	57402062	57402472	LTR|ERVL-MaLR|MSTB	+	chr15	57406736	57550727	STRG.163726.6	+	57406736,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57407102,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr4	2861140	2861155	2861154	+	RAMPAGE_only	4	4	9	0.443814	3.000000	chr4	2860917	2861297	LINE|L2|L2a	-	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr15	42271581	42271624	42271623	-	High_confidence	10	10	66	3.254634	5.235544	chr15	42271434	42271732	DNA|TcMar-Tigger|Tigger3a	+	chr15	42239667	42271601	TMEM87A|ENST00000561578.5	-	42239667,42244049,42260957,42261195,42264089,42267946,42271554	42239731,42244167,42261002,42261249,42264203,42268032,42271601	0.893939
upper_lobe_of_left_lung_female_adult_53_years	chr3	108165423	108165474	108165465	-	RAMPAGE_only	5	6	22	1.084878	4.084184	chr3	108165378	108165542	DNA|hAT-Ac|OldhAT1	+	chr3	108160811	108219544	STRG.44571.2	-	108160811,108163662,108166853,108167792,108191520,108206627,108213930,108218534,108219409	108162655,108165493,108166985,108167864,108191643,108206696,108214021,108218653,108219544	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr3	138095201	138095231	138095201	-	RAMPAGE_only	3	3	6	0.295876	2.584963	chr3	138095060	138095271	SINE|MIR|MIR	+	chr3	138092351	138103778	DZIP1L|ENST00000490472.1	-	138092351,138094861,138097762,138103470	138092544,138094983,138097847,138103778	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr9	97575039	97575040	97575039	+	High_confidence	15	17	21	1.035565	4.106603	chr9	97574036	97575455	LTR|ERV1|LTR12C	+	chr9	97574990	97601748	STRG.116998.3	+	97574990,97591290,97599633	97575486,97591435,97601748	0.952381
upper_lobe_of_left_lung_female_adult_53_years	chr17	75498213	75498258	75498257	+	High_confidence	3	3	16	0.789002	3.640224	chr17	75498201	75498275	LINE|L2|L2-1_Crp	+	chr17	75498216	75498814	TMEM94|ENST00000577194.1	+	75498216,75498443	75498323,75498814	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr11	34511804	34511820	34511819	-	High_confidence	3	3	7	0.345188	2.521641	chr11	34511819	34511851	LINE|CR1|X6A_LINE	-	chr11	34482429	34511828	ELF5|ENST00000528709.1	-	34482429,34490008,34505628,34511543	34482499,34490059,34505753,34511828	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr9	39403383	39403432	39403415	+	High_confidence	4	4	18	0.887627	3.947703	chr9	39403285	39403640	LTR|ERV1|LTR1A2	+	chr9	39403422	39403724	STRG.114072.1	+	39403422	39403724	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr8	19821218	19821234	19821218	+	High_confidence	2	2	6	0.295876	2.584963	chr8	19821161	19821436	LTR|ERVL-MaLR|MLT1C	-	chr8	19820948	19824492	INTS10|ENST00000522081.1	+	19820948,19823300,19823872	19822520,19823441,19824492	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr3	9192874	9192926	9192874	+	High_confidence	2	2	8	0.394501	3.000000	chr3	9192754	9193216	LINE|L2|L2b	-	chr3	9192534	9194453	SRGAP3-AS2|ENST00000450920.1	+	9192534,9193725	9192995,9194453	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr14	77076182	77076194	77076188	-	High_confidence	40	40	101	4.980576	6.023557	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77073050	77076195	STRG.158826.2	-	77073050,77076104	77074598,77076195	0.683168
upper_lobe_of_left_lung_female_adult_53_years	chr11	3477038	3477073	3477055	-	High_confidence	56	57	174	8.580398	6.262407	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3473584	3477045	STRG.129048.1	-	3473584,3476942	3476373,3477045	0.718391
upper_lobe_of_left_lung_female_adult_53_years	chr11	7906253	7906254	7906253	-	High_confidence	7	7	7	0.345188	2.521641	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7699561	7906039	STRG.129625.2	-	7699561,7701323,7701715,7702156,7703697,7704564,7879006,7905602	7700485,7701475,7701811,7702329,7703789,7704674,7879083,7906039	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr10	121498499	121498519	121498518	-	RAMPAGE_only	5	5	11	0.542439	3.277613	chr10	121498455	121498527	DNA|hAT-Ac|OldhAT1	+	chr10	121479854	121515179	FGFR2|ENST00000429361.5	-	121479854,121485394,121487353,121487990,121496531,121498494,121500825,121503789,121515116	121480021,121485532,121487424,121488113,121496722,121498605,121500947,121503941,121515179	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr11	43881075	43881090	43881087	+	High_confidence	10	11	41	2.021818	5.125606	chr11	43881083	43881272	SINE|MIR|MIRb	-	chr11	43880873	43920266	ALKBH3|ENST00000530803.5	+	43880873,43882582,43883084,43883982,43886608,43889724,43897194,43901515,43919041,43919917	43881179,43882731,43883188,43884017,43886653,43889828,43897354,43901725,43919136,43920266	0.682927
upper_lobe_of_left_lung_female_adult_53_years	chr7	131108707	131108708	131108707	-	RAMPAGE_only	49	49	54	2.662882	5.000569	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944159	131109916	LINC-PINT|NR_109854.1	-	130944159,130945719,130984052,131052424,131107719,131109736	130944889,130945791,130984109,131052555,131108803,131109916	0.944444
upper_lobe_of_left_lung_female_adult_53_years	chr16	2205823	2205858	2205850	+	High_confidence	4	4	21	1.035565	3.784184	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.952381
upper_lobe_of_left_lung_female_adult_53_years	chr13	24580612	24580623	24580612	+	High_confidence	3	3	8	0.394501	2.521641	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr11	17225008	17225043	17225008	+	RAMPAGE_only	2	2	7	0.345188	2.807355	chr11	17224821	17225165	LINE|L2|L2a	+	chr11	17260339	17349980	NUCB2|ENST00000646648.1	+	17260339,17269184,17276007,17282788,17295323,17296103,17301743,17309571,17310824,17311184,17311871,17312027,17315385,17330126,17330901,17337347,17349344	17260501,17269331,17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17337534,17349980	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr18	36807865	36807890	36807869	-	High_confidence	7	7	18	0.887627	4.058814	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr2	237510069	237510070	237510069	+	High_confidence	6	8	8	0.394501	3.000000	chr2	237509843	237510275	LINE|RTE-X|L4_B_Mam	+	chr2	237510069	237518572	MLPH|ENST00000477501.5	+	237510069,237510573,237510988,237518538	237510281,237510795,237511101,237518572	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr11	57794012	57794037	57794036	+	RAMPAGE_only	2	2	7	0.345188	2.807355	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr11	67848662	67848702	67848701	-	High_confidence	34	34	143	7.051706	5.942534	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67845213	67848697	STRG.133166.1	-	67845213,67848565	67847989,67848697	0.839161
upper_lobe_of_left_lung_female_adult_53_years	chr10	17216310	17216311	17216310	-	RAMPAGE_only	5	6	7	0.345188	2.584963	chr10	17216274	17216354	LTR|ERV1|HERVIP10FH-int	+	chr10	17214238	17226898	VIM-AS1|ENST00000437232.5	-	17214238,17216166,17217601,17226855	17215364,17216274,17217675,17226898	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr1	30738948	30738964	30738948	-	RAMPAGE_only	1	1	8	0.394501	2.807355	chr1	30738862	30738914	SINE|MIR|MIR	-	chr1	30732468	30757162	STRG.1830.2	-	30732468,30735172,30737603,30738939,30739808,30741639,30742455,30756395	30733917,30735265,30737699,30739062,30739937,30741716,30742549,30757162	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr17	19386313	19386346	19386313	-	High_confidence	3	3	14	0.690377	3.334679	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.928571
upper_lobe_of_left_lung_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	1589	1732	4010	197.743651	5.441365	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.975561
upper_lobe_of_left_lung_female_adult_53_years	chr1	153552107	153552118	153552107	-	RAMPAGE_only	21	21	42	2.071131	4.948896	chr1	153551862	153552168	SINE|Alu|AluSx	+	chr1	153547328	153549372	S100A3|ENST00000368713.7	-	153547328,153548344,153549180	153547846,153548490,153549372	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr3	151539226	151539247	151539226	-	RAMPAGE_only	3	3	10	0.493126	2.725481	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151534641	151770011	STRG.49345.6	-	151534641,151581538,151600746,151751442,151769600	151539262,151581654,151600951,151751511,151770011	0.800000
upper_lobe_of_left_lung_female_adult_53_years	chr13	75848810	75848811	75848810	+	High_confidence	6	6	9	0.443814	2.947703	chr13	75848621	75849022	LINE|L1|L1P5	-	chr13	75848975	75856717	LMO7|ENST00000482116.1	+	75848975,75853091,75855259,75856505	75849292,75853388,75855368,75856717	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr3	48479458	48479495	48479458	-	High_confidence	2	2	7	0.345188	2.807355	chr3	48479425	48479570	LINE|L1|L1M4	+	chr3	48469359	48479559	SHISA5|ENST00000486344.5	-	48469359,48469727,48479176	48469573,48469843,48479559	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr4	48534561	48534569	48534561	-	RAMPAGE_only	3	3	8	0.394501	2.500000	chr4	48534426	48534540	LINE|L1|L1M5	-	chr4	48521093	48546759	FRYL|ENST00000513401.5	-	48521093,48522900,48527476,48527970,48528174,48531155,48534544,48535656,48539970,48540352,48542026,48543806,48544782,48546066	48521215,48523104,48527653,48528045,48528336,48531353,48534685,48535827,48540068,48540960,48542121,48543997,48544904,48546759	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr3	45034830	45034841	45034840	+	RAMPAGE_only	5	5	16	0.789002	3.773557	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	0.937500
upper_lobe_of_left_lung_female_adult_53_years	chr20	34022653	34022662	34022653	+	RAMPAGE_only	4	4	12	0.591752	3.084963	chr20	34022680	34022788	SINE|MIR|MIR3	+	chr20	34029860	34077129	RALY|ENST00000442805.1	+	34029860,34031521,34072065,34073562,34075873,34076701,34077027	34029927,34031604,34072330,34073635,34076040,34076815,34077129	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr14	81427421	81427467	81427461	-	High_confidence	6	6	31	1.528692	4.173557	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81398308	81427417	STRG.159015.2	-	81398308,81427101,81427300	81398580,81427212,81427417	0.903226
upper_lobe_of_left_lung_female_adult_53_years	chr11	134467260	134467265	134467264	+	High_confidence	5	5	9	0.443814	2.947703	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134466503	134470066	STRG.137879.1	+	134466503,134467864,134469486	134467615,134467987,134470066	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr2	237546191	237546192	237546191	+	High_confidence	8	8	10	0.493126	3.121928	chr2	237545882	237546379	LTR|ERV1|MER4A	-	chr2	237546404	237553843	MLPH|ENST00000477457.1	+	237546404,237549220,237552336,237553565	237546683,237549278,237552437,237553843	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr15	30624362	30624374	30624362	+	High_confidence	8	8	26	1.282128	3.543465	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.884615
upper_lobe_of_left_lung_female_adult_53_years	chr10	121974523	121974532	121974531	-	High_confidence	3	3	8	0.394501	2.521641	chr10	121974357	121974506	DNA|hAT-Charlie|MER5A	-	chr10	121967645	121974754	NSMCE4A|ENST00000472431.1	-	121967645,121970938,121974003,121974305	121967806,121971069,121974081,121974754	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr6	30933960	30933971	30933960	-	RAMPAGE_only	2	3	6	0.295876	2.584963	chr6	30933772	30933919	SINE|MIR|MIRb	-	chr6	30931349	30932175	SFTA2|NM_205854.2	-	30931349,30931706,30932035	30931574,30931795,30932175	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr19	54617130	54617152	54617130	+	High_confidence	9	11	44	2.169756	5.083128	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr8	99892036	99892057	99892056	-	RAMPAGE_only	106	106	342	16.864920	5.051078	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr21	33931125	33931157	33931156	+	High_confidence	9	9	27	1.331441	3.555085	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.925926
upper_lobe_of_left_lung_female_adult_53_years	chr7	87039797	87039839	87039797	-	High_confidence	4	5	19	0.936940	3.787144	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86876905	87040234	KIAA1324L|NM_001291991.1	-	86876905,86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86941351,86942017,86944898,87040102	86880530,86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86941385,86942104,86945046,87040234	0.526316
upper_lobe_of_left_lung_female_adult_53_years	chr10	79696702	79696703	79696702	-	High_confidence	5	5	7	0.345188	2.521641	chr10	79696508	79697058	LTR|ERV1|LTR43B	+	chr10	79695547	79697172	STRG.125239.1	-	79695547,79696060	79695998,79697172	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr8	65979196	65979205	65979196	+	RAMPAGE_only	28	28	43	2.120443	4.802915	chr8	65979005	65979377	LTR|ERVL-MaLR|THE1B	+	chr8	66021555	66100520	DNAJC5B|NM_033105.4	+	66021555,66043487,66051530,66076659,66080376,66099936	66021705,66043611,66051666,66076873,66080548,66100520	0.813953
upper_lobe_of_left_lung_female_adult_53_years	chr4	55947971	55947972	55947971	-	High_confidence	4	4	7	0.345188	2.807355	chr4	55947862	55947994	LTR|ERV1|MER51D	-	chr4	55937604	55947956	STRG.56681.1	-	55937604,55940516,55947839	55938955,55940632,55947956	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr8	136489455	136489476	136489475	+	High_confidence	6	7	10	0.493126	3.321928	chr8	136489231	136489726	LTR|ERV1|MER61F	+	chr8	136489447	136529876	LINC02055|ENST00000523232.1	+	136489447,136515965,136519147,136529794	136489502,136516300,136519239,136529876	0.700000
upper_lobe_of_left_lung_female_adult_53_years	chrX	109760768	109760826	109760768	-	RAMPAGE_only	37	37	120	5.917516	6.149195	chrX	109760494	109761733	LINE|L1|L1MCa	+	chrX	109641329	109733403	ACSL4|NM_001318509.1	-	109641329,109659353,109661530,109663210,109665419,109668100,109669033,109674401,109677987,109678264,109680997,109681265,109682718,109683135,109696143,109733138	109644186,109659511,109661645,109663402,109665494,109668273,109669173,109674473,109678111,109678415,109681136,109681375,109682896,109683666,109696196,109733403	0.725000
upper_lobe_of_left_lung_female_adult_53_years	chr12	109053951	109053957	109053956	-	High_confidence	12	18	38	1.873880	4.836592	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.894737
upper_lobe_of_left_lung_female_adult_53_years	chr2	24887163	24887185	24887184	-	RAMPAGE_only	6	7	10	0.493126	3.169925	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24841324	24878027	ADCY3|ENST00000433852.1	-	24841324,24841555,24842253,24872569,24877921	24841386,24841667,24842384,24872719,24878027	0.700000
upper_lobe_of_left_lung_female_adult_53_years	chr6	36542164	36542165	36542164	-	RAMPAGE_only	7	7	10	0.493126	2.646439	chr6	36541819	36542134	SINE|Alu|AluSx1	-	chr6	36493891	36545145	STRG.80621.3	-	36493891,36496710,36497779,36498362,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36541768	36495914,36496805,36497875,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540204,36545145	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr5	150507696	150507697	150507696	+	High_confidence	18	18	18	0.887627	3.725481	chr5	150507670	150507785	SINE|MIR|MIR3	-	chr5	150507639	150554279	STRG.75713.1	+	150507639,150508146,150520867,150527803,150532944,150534866,150535699,150539227,150540081,150541569,150542847,150545311,150548217,150549677,150551752,150553212	150507698,150508226,150521767,150528298,150533032,150535021,150535885,150539356,150540264,150541666,150542971,150545486,150548388,150549787,150551855,150554279	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr17	64764534	64764551	64764550	-	RAMPAGE_only	3	3	7	0.345188	2.584963	chr17	64764423	64764603	SINE|Alu|AluSx1	+	chr17	64761911	64762710	BPTFP1|ENST00000579209.1	-	64761911,64762354	64762047,64762710	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr1	162868832	162868914	162868913	-	High_confidence	29	29	106	5.227139	5.265106	chr1	162868436	162870470	LINE|L1|L1PBa1	+	chr1	162851315	162868815	CCDC190|ENST00000367912.6	-	162851315,162855086,162855631,162859459,162868652	162853161,162855359,162855755,162859658,162868815	0.566038
upper_lobe_of_left_lung_female_adult_53_years	chr16	15006421	15006455	15006421	+	RAMPAGE_only	3	3	8	0.394501	3.000000	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr4	2867814	2867851	2867814	+	High_confidence	6	7	20	0.986253	3.787144	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr18	46087105	46087119	46087118	-	High_confidence	5	5	13	0.641064	3.180833	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.846154
upper_lobe_of_left_lung_female_adult_53_years	chr17	60887003	60887041	60887025	+	High_confidence	3	3	10	0.493126	3.169925	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.800000
upper_lobe_of_left_lung_female_adult_53_years	chr7	64999443	64999444	64999443	-	RAMPAGE_only	9	9	9	0.443814	2.947703	chr7	64999343	64999936	LTR|ERV1|LTR4	-	chr7	64990808	65006653	ERV3-1|ENST00000394323.2	-	64990808,65006540	64993414,65006653	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr19	35115798	35115805	35115798	+	High_confidence	2	2	7	0.345188	2.584963	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr7	103353930	103353957	103353956	+	High_confidence	9	9	19	0.936940	3.721612	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr8	17895504	17895521	17895520	-	High_confidence	6	6	24	1.183503	4.277613	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	0.791667
upper_lobe_of_left_lung_female_adult_53_years	chrX	94702191	94702255	94702249	-	High_confidence	6	6	30	1.479379	4.021641	chrX	94701137	94704174	LTR|ERV1|HERVH-int	-	chrX	94697418	94702087	STRG.204124.1	-	94697418,94702006	94698009,94702087	0.600000
upper_lobe_of_left_lung_female_adult_53_years	chr12	79543367	79543411	79543367	-	High_confidence	193	196	580	28.601326	7.009888	chr12	79543260	79543408	LTR|ERV1|HERVH-int	+	chr12	79505637	79543574	STRG.145300.3	-	79505637	79543574	0.939655
upper_lobe_of_left_lung_female_adult_53_years	chr8	22157382	22157407	22157382	+	RAMPAGE_only	3	5	9	0.443814	2.750000	chr8	22157339	22157422	SINE|MIR|MIR3	-	chr8	22158612	22159799	SFTPC|ENST00000524350.1	+	22158612,22159474	22158825,22159799	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr9	34488852	34488853	34488852	+	RAMPAGE_only	4	4	6	0.295876	2.584963	chr9	34488759	34488909	SINE|MIR|MIR3	+	chr9	34458839	34520950	STRG.113581.3	+	34458839,34483447,34485141,34485436,34490011,34490368,34491494,34493193,34497114,34500721,34501137,34506626,34512108,34512336,34513111,34514393,34517284,34520657	34459053,34483480,34485240,34489449,34490124,34490488,34491554,34493328,34497199,34500839,34501181,34506874,34512198,34512424,34513191,34514739,34517467,34520950	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	469	552	961	47.389439	5.923313	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.987513
upper_lobe_of_left_lung_female_adult_53_years	chr11	207574	207575	207574	+	High_confidence	6	7	8	0.394501	2.807355	chr11	207579	207645	Retroposon|SVA|SVA_F	+	chr11	207510	215175	RIC8A|NM_021932.5	+	207510,209270,209406,210570,211198,212415,212596,212836,213298,214229	208938,209318,210000,210662,211349,212511,212759,212981,213418,215175	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	121	121	121	5.966828	4.359916	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr12	124355437	124355489	124355437	-	RAMPAGE_only	6	6	31	1.528692	4.444188	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124324415	124422554	NCOR2|ENST00000356219.7	-	124324415,124326190,124327408,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124398118,124400500,124402403,124419956,124422500	124325583,124326370,124327633,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362297,124363799,124372610,124374463,124378384,124385887,124398181,124400673,124402561,124420055,124422554	0.870968
upper_lobe_of_left_lung_female_adult_53_years	chr22	22336752	22336753	22336752	+	RAMPAGE_only	35	39	39	1.923193	4.496815	chr22	22331689	22336920	LINE|L1|L1PA8	+	chr22	22758699	22759218	IGLV2-14|ENST00000390312.2	+	22758699,22758903	22758786,22759218	0.641026
upper_lobe_of_left_lung_female_adult_53_years	chr12	85032664	85032697	85032696	+	RAMPAGE_only	4	4	13	0.641064	3.418296	chr12	85032541	85032699	LINE|RTE-BovB|MamRTE1	+	chr12	85036313	85124858	LRRIQ1|ENST00000525971.6	+	85036313,85038152,85040489,85044717,85046019,85047246,85052176,85055546,85065261,85066747,85072906,85098354,85098866,85104003,85106521,85121696,85124069	85036407,85038308,85040601,85044809,85046137,85047470,85052251,85057184,85065414,85066898,85073098,85098548,85098994,85104077,85106615,85121876,85124858	0.846154
upper_lobe_of_left_lung_female_adult_53_years	chr4	184343887	184343888	184343887	-	RAMPAGE_only	17	17	23	1.134191	4.088779	chr4	184343854	184344086	LTR|ERVL|LTR33A	-	chr4	184340733	184342502	STRG.65229.1	-	184340733	184342502	0.695652
upper_lobe_of_left_lung_female_adult_53_years	chr3	57267756	57267782	57267781	+	RAMPAGE_only	6	9	19	0.936940	3.413834	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.894737
upper_lobe_of_left_lung_female_adult_53_years	chr3	197458261	197458292	197458291	-	High_confidence	6	6	10	0.493126	3.121928	chr3	197458272	197458415	DNA|hAT-Tip100|MER91A	+	chr3	197445060	197458323	AC128709.2|ENST00000438408.1	-	197445060,197457627,197458184	197445323,197457783,197458323	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr6	28354032	28354067	28354066	-	High_confidence	3	3	13	0.641064	3.418296	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324736	28354195	ZSCAN31|ENST00000396838.6	-	28324736,28327382,28329302,28336789,28337755,28341745,28353861,28354130	28326854,28327533,28329714,28336943,28337893,28341792,28353952,28354195	0.692308
upper_lobe_of_left_lung_female_adult_53_years	chr2	227164532	227164547	227164544	+	High_confidence	2	2	8	0.394501	2.807355	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr9	42231437	42231470	42231469	+	High_confidence	11	12	46	2.268381	4.942275	chr9	42231339	42231694	LTR|ERV1|LTR1A2	+	chr9	42231470	42344064	STRG.114428.1	+	42231470,42343853	42231836,42344064	0.891304
upper_lobe_of_left_lung_female_adult_53_years	chr8	18063185	18063206	18063197	-	High_confidence	4	4	18	0.887627	3.969816	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.944444
upper_lobe_of_left_lung_female_adult_53_years	chr9	20658607	20658634	20658607	+	High_confidence	11	12	23	1.134191	3.757925	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658338	20694659	STRG.112771.9	+	20658338,20694519	20658826,20694659	0.695652
upper_lobe_of_left_lung_female_adult_53_years	chr4	153687951	153687952	153687951	+	RAMPAGE_only	6	6	9	0.443814	3.169925	chr4	153687920	153688176	LTR|ERV1|MER57A-int	+	chr4	153684279	153705378	STRG.63488.4	+	153684279,153702891	153702510,153705378	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr8	86369000	86369029	86369028	+	RAMPAGE_only	5	5	12	0.591752	2.845351	chr8	86368776	86369052	LINE|L2|L2c	+	chr8	86374040	86467476	WWP1|ENST00000265428.4	+	86374040,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467476	0.916667
upper_lobe_of_left_lung_female_adult_53_years	chr20	35713325	35713373	35713352	-	High_confidence	2	2	10	0.493126	2.725481	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr9	123179130	123179131	123179130	-	RAMPAGE_only	5	7	7	0.345188	2.584963	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr21	8817798	8817799	8817798	+	RAMPAGE_only	5	7	8	0.394501	2.807355	chr21	8817416	8819072	LINE|L1|L1PB	-	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr10	103605823	103605824	103605823	-	RAMPAGE_only	7	8	8	0.394501	2.521641	chr10	103605815	103605885	LINE|CR1|L3	+	chr10	103593878	103661671	STRG.127108.4	-	103593878,103605797,103611580,103612852,103617196,103622469,103627088,103660982,103661636	103603789,103605917,103611630,103613190,103617314,103622553,103627202,103661114,103661671	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr7	106011668	106011687	106011686	+	RAMPAGE_only	18	18	30	1.479379	4.348394	chr7	106011673	106011718	SINE|MIR|MIR1_Amn	-	chr7	106001547	106032763	STRG.98885.3	+	106001547,106004497,106015110,106015926,106017845,106020372,106022197,106024380,106026681,106028550,106030791,106032392	106001610,106013031,106015213,106016025,106018072,106020544,106022448,106024562,106026695,106028582,106030840,106032763	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr1	207112936	207112937	207112936	+	RAMPAGE_only	11	11	16	0.789002	3.906891	chr1	207112731	207112984	LINE|L2|L2c	+	chr1	207104377	207115465	C4BPA|ENST00000424088.1	+	207104377,207113000,207114099,207114675,207115415	207104430,207113167,207114285,207114771,207115465	0.812500
upper_lobe_of_left_lung_female_adult_53_years	chr15	37921826	37921875	37921868	+	High_confidence	3	3	16	0.789002	3.625000	chr15	37919314	37922492	LINE|L1|L1PB1	-	chr15	37921938	37936918	TMCO5A|ENST00000560841.5	+	37921938,37935256,37936313,37936846	37922203,37935348,37936463,37936918	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr2	238604200	238604212	238604200	+	RAMPAGE_only	3	4	8	0.394501	3.000000	chr2	238602743	238604702	LINE|L1|L1MEd	+	chr2	238601514	238611413	STRG.35702.3	+	238601514,238607419	238607398,238611413	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr3	99691440	99691475	99691472	+	RAMPAGE_only	4	4	17	0.838315	3.690117	chr3	99691450	99691571	DNA|hAT-Charlie|MER5A1	+	chr3	99638621	99794508	COL8A1|ENST00000621757.1	+	99638621,99691398,99744896,99790679,99794229	99638664,99691568,99745021,99791010,99794508	0.588235
upper_lobe_of_left_lung_female_adult_53_years	chr12	21662312	21662316	21662312	+	High_confidence	94	99	150	7.396895	5.704557	chr12	21661347	21662731	LTR|ERV1|LTR12C	+	chr12	21662312	21760032	AC010197.1|ENST00000541860.1	+	21662312,21759913	21662771,21760032	0.866667
upper_lobe_of_left_lung_female_adult_53_years	chr2	200889187	200889216	200889187	-	High_confidence	2	2	6	0.295876	2.584963	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200881421	200889157	PPIL3|ENST00000492074.5	-	200881421,200885261,200885697,200886913,200887612,200888955	200881488,200885367,200885772,200886982,200887685,200889157	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr11	44564426	44564433	44564426	+	High_confidence	15	15	43	2.120443	4.832561	chr11	44564373	44564477	SINE|MIR|MIRc	+	chr11	44564426	44615295	CD82|ENST00000526958.5	+	44564426,44587474,44594642,44600157,44605057,44605354,44615271	44564502,44587556,44594725,44600230,44605182,44605429,44615295	0.790698
upper_lobe_of_left_lung_female_adult_53_years	chr8	80485592	80485619	80485592	+	High_confidence	8	8	22	1.084878	4.321928	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.772727
upper_lobe_of_left_lung_female_adult_53_years	chr3	135965673	135965749	135965723	+	High_confidence	21	29	185	9.122837	6.039709	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.978378
upper_lobe_of_left_lung_female_adult_53_years	chr3	129559620	129559637	129559620	-	High_confidence	8	8	13	0.641064	3.251629	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129560414	STRG.47442.2	-	129555213,129556616,129557082,129558427,129560329	129556428,129556691,129557223,129559783,129560414	0.923077
upper_lobe_of_left_lung_female_adult_53_years	chr6	31587007	31587021	31587009	+	High_confidence	5	9	13	0.641064	3.334679	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr11	7906288	7906289	7906288	-	High_confidence	7	8	10	0.493126	2.947703	chr11	7906232	7906607	LTR|ERV1|LTR10C	-	chr11	7699561	7906039	STRG.129625.2	-	7699561,7701323,7701715,7702156,7703697,7704564,7879006,7905602	7700485,7701475,7701811,7702329,7703789,7704674,7879083,7906039	0.600000
upper_lobe_of_left_lung_female_adult_53_years	chrX	18650636	18650637	18650636	-	High_confidence	30	30	39	1.923193	4.520000	chrX	18650611	18650761	DNA|hAT-Charlie|MER5B	-	chrX	18640537	18650634	STRG.199497.1	-	18640537,18644429,18647190,18650295	18642156,18644625,18647332,18650634	0.692308
upper_lobe_of_left_lung_female_adult_53_years	chr2	120538902	120538917	120538902	+	High_confidence	3	4	8	0.394501	2.750000	chr2	120538714	120539005	LTR|ERVL|LTR16E2	-	chr2	120539212	120539610	STRG.27084.1	+	120539212	120539610	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr17	45585833	45585834	45585833	-	RAMPAGE_only	7	9	10	0.493126	2.641604	chr17	45585678	45585861	SINE|Alu|AluSp	+	chr17	45508108	45550335	LRRC37A4P|ENST00000581296.2	-	45508108,45508266,45508484,45510243,45513184,45513867,45517860,45519227,45521306,45539162,45539891,45542763,45545604,45547726	45508160,45508406,45508539,45510293,45513289,45515379,45518148,45519372,45521425,45539243,45539963,45542835,45545676,45550335	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr5	109383417	109383465	109383448	-	High_confidence	4	7	18	0.887627	3.572469	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr1	196715644	196715669	196715644	+	RAMPAGE_only	3	3	10	0.493126	3.321928	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr8	2726956	2726963	2726962	+	High_confidence	14	14	29	1.430066	4.236369	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.758621
upper_lobe_of_left_lung_female_adult_53_years	chr19	7642274	7642317	7642315	+	High_confidence	7	13	36	1.775255	4.871178	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr6	34720148	34720150	34720148	-	RAMPAGE_only	5	9	14	0.690377	3.700440	chr6	34719459	34720428	LTR|ERVK|LTR5_Hs	-	chr6	34587279	34696850	C6orf106|NM_024294.3	-	34587279,34606554,34646600,34654624,34696445	34590600,34606904,34646798,34654779,34696850	0.642857
upper_lobe_of_left_lung_female_adult_53_years	chr14	96451489	96451490	96451489	+	RAMPAGE_only	10	10	13	0.641064	3.188722	chr14	96451524	96451593	LINE|RTE-BovB|MamRTE1	+	chr14	96449769	96488275	STRG.159803.2	+	96449769,96451424,96456346,96458082,96471477,96472686,96478464,96482998,96486897,96487957	96449879,96451570,96456475,96458212,96471606,96472755,96478662,96483219,96487056,96488275	0.923077
upper_lobe_of_left_lung_female_adult_53_years	chr20	45761978	45762042	45761978	+	High_confidence	6	6	28	1.380754	3.678439	chr20	45759753	45763699	LTR|ERV1|HERVH-int	+	chr20	45762231	45767485	STRG.191247.1	+	45762231,45765157	45762327,45767485	0.964286
upper_lobe_of_left_lung_female_adult_53_years	chr16	2331255	2331283	2331282	-	RAMPAGE_only	3	3	10	0.493126	3.169925	chr16	2331202	2331498	SINE|Alu|AluSz6	-	chr16	2323338	2329724	ABCA3|ENST00000567910.1	-	2323338,2324403,2326009,2326412,2328452,2329647	2323688,2324531,2326274,2326492,2328757,2329724	0.700000
upper_lobe_of_left_lung_female_adult_53_years	chr1	1655395	1655411	1655409	-	RAMPAGE_only	19	21	39	1.923193	5.080943	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1635226	1658972	STRG.304.5	-	1635226,1635936,1636332,1636681,1636896,1637080,1637761,1638499,1640276,1641047,1641661,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1635856,1636126,1636481,1636798,1637004,1637513,1637883,1638590,1640452,1641113,1641820,1642001,1645262,1649637,1652566,1655484,1657302,1657498,1658972	0.923077
upper_lobe_of_left_lung_female_adult_53_years	chr6	2990748	2990755	2990748	-	RAMPAGE_only	5	7	18	0.887627	3.454822	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr10	103181308	103181329	103181328	-	High_confidence	3	3	6	0.295876	2.584963	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103169283	103181320	NT5C2|ENST00000467380.1	-	103169283,103174857,103181184	103169449,103174982,103181320	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr15	45645874	45645903	45645902	+	High_confidence	4	4	14	0.690377	3.521641	chr15	45645871	45646155	DNA|hAT-Tip100|Arthur1C	+	chr15	45645880	45669946	SQOR|ENST00000561493.5	+	45645880,45658906,45661954,45669927	45646008,45659157,45662125,45669946	0.928571
upper_lobe_of_left_lung_female_adult_53_years	chr3	122713136	122713161	122713160	+	RAMPAGE_only	9	9	16	0.789002	3.773557	chr3	122712966	122713219	LINE|L1|L1PB2	-	chr3	122700525	122722647	PARP14|ENST00000474669.1	+	122700525,122703741,122704526,122708189,122713423,122713871,122714261,122718070,122718358,122720254	122701635,122703978,122704748,122708268,122713573,122713934,122714429,122718277,122718958,122722647	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr1	179877347	179877374	179877373	-	High_confidence	4	4	8	0.394501	2.750000	chr1	179877258	179877566	SINE|Alu|AluJr	+	chr1	179841055	179877790	STRG.13343.1	-	179841055,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877790	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr15	75347033	75347066	75347042	+	High_confidence	11	12	49	2.416319	5.009762	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.653061
upper_lobe_of_left_lung_female_adult_53_years	chr2	213923806	213923807	213923806	+	High_confidence	6	6	8	0.394501	2.521641	chr2	213921220	213924593	LINE|L1|L1PA14	-	chr2	213923862	214410233	SPAG16|ENST00000480494.1	+	213923862,214013950,214108195,214149139,214410139	213924004,214014077,214108261,214149266,214410233	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr3	138032554	138032819	138032705	+	RAMPAGE_only	24	24	295	14.547226	6.726471	chr3	138032613	138032735	SINE|Alu|FLAM_A	-	chr3	138010163	138033652	CLDN18|NM_016369.3	+	138010163,138023657,138024606,138029796,138030969	138010445,138023822,138024724,138029907,138033652	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr12	53464815	53464829	53464815	+	RAMPAGE_only	7	7	20	0.986253	3.721612	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.950000
upper_lobe_of_left_lung_female_adult_53_years	chr10	47985926	47985973	47985972	-	RAMPAGE_only	8	8	13	0.641064	3.251629	chr10	47985815	47986226	LINE|L1|L1ME2	-	chr10	47985518	47991850	AC245041.2|ENST00000610809.1	-	47985518,47991679	47987309,47991850	0.538462
upper_lobe_of_left_lung_female_adult_53_years	chr11	7905925	7905979	7905925	-	High_confidence	15	21	85	4.191574	5.869693	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.835294
upper_lobe_of_left_lung_female_adult_53_years	chr21	28836766	28836786	28836766	-	RAMPAGE_only	11	11	37	1.824567	4.794653	chr21	28834144	28838252	LINE|L1|L1PB1	+	chr21	28821494	28885364	STRG.193352.3	-	28821494,28872612,28876311,28878191,28882159,28882984,28885211	28821973,28872739,28876491,28878333,28882250,28883071,28885364	0.729730
upper_lobe_of_left_lung_female_adult_53_years	chr15	92894968	92895008	92894968	+	RAMPAGE_only	2	2	12	0.591752	2.918296	chr15	92894951	92895083	SINE|Alu|FLAM_A	+	chr15	92883014	92897975	STRG.167535.21	+	92883014,92885514,92886168,92892003	92883186,92885584,92886254,92897975	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr17	28525381	28525383	28525381	+	RAMPAGE_only	6	9	10	0.493126	2.947703	chr17	28525111	28525398	DNA|TcMar-Tigger|Tigger19b	+	chr17	28523940	28538896	FOXN1|ENST00000226247.2	+	28523940,28524502,28527250,28529093,28530748,28534330,28534706,28537116	28524092,28524967,28527361,28529224,28530845,28534538,28535198,28538896	0.600000
upper_lobe_of_left_lung_female_adult_53_years	chr11	123061128	123061328	123061256	-	High_confidence	47	48	237	11.687094	5.977557	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.940928
upper_lobe_of_left_lung_female_adult_53_years	chr20	18794077	18794086	18794085	+	High_confidence	42	42	94	4.635387	4.660135	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.989362
upper_lobe_of_left_lung_female_adult_53_years	chr3	9986898	9986905	9986898	+	High_confidence	2	2	6	0.295876	2.584963	chr3	9986935	9987241	SINE|Alu|AluY	+	chr3	9986892	10007004	EMC3-AS1|NR_103821.1	+	9986892,9988711,10002716	9987264,9988747,10007004	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr20	35713470	35713486	35713470	-	High_confidence	3	3	8	0.394501	2.750000	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35705261	35713415	RBM39|ENST00000470563.5	-	35705261,35707119,35709223,35713018,35713293	35705330,35707201,35709256,35713096,35713415	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr10	5018007	5018033	5018014	-	High_confidence	5	5	14	0.690377	3.235926	chr10	5017765	5018153	LTR|ERVL-MaLR|MSTA	-	chr10	5006461	5017934	AKR1C2|ENST00000604711.1	-	5006461,5007406,5010343,5017899	5006592,5007506,5010653,5017934	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr4	81154211	81154222	81154221	-	High_confidence	14	14	39	1.923193	4.663231	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr5	176411458	176411459	176411458	-	RAMPAGE_only	6	8	8	0.394501	2.750000	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr12	79542544	79542551	79542550	-	RAMPAGE_only	5	6	10	0.493126	3.121928	chr12	79540300	79543266	LTR|ERV1|HERVH-int	+	chr12	79393671	79503362	AC027288.3|ENST00000553165.1	-	79393671,79503168	79393925,79503362	0.600000
upper_lobe_of_left_lung_female_adult_53_years	chr14	103778746	103778768	103778747	-	RAMPAGE_only	13	16	32	1.578004	4.750000	chr14	103778558	103778705	SINE|Alu|AluJr	-	chr14	103733194	103797488	PPP1R13B|ENST00000647748.1	-	103733194,103736002,103737693,103738678,103738885,103739823,103741789,103742653,103746372,103749793,103752999,103754069,103757649,103778744,103784794,103797370	103735195,103736202,103737860,103738812,103739023,103740593,103742291,103742823,103746553,103749934,103753196,103754238,103757751,103778821,103784914,103797488	0.843750
upper_lobe_of_left_lung_female_adult_53_years	chr12	111760	111781	111780	-	High_confidence	3	3	14	0.690377	3.521641	chr12	110820	111833	LTR|ERV1|HERVP71A-int	-	chr12	106523	111850	AC026369.3|ENST00000540226.1	-	106523,111618	106877,111850	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr8	100303375	100303407	100303406	-	RAMPAGE_only	4	4	10	0.493126	2.725481	chr8	100303086	100303537	LTR|ERVL-MaLR|MLT1D	-	chr8	100278607	100310327	STRG.108643.13	-	100278607,100300527	100288267,100310327	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr8	62164815	62164835	62164815	-	RAMPAGE_only	5	5	11	0.542439	3.321928	chr8	62164702	62165238	LINE|L1|L1PB1	+	chr8	62135088	62135748	STRG.105791.1	-	62135088	62135748	0.545455
upper_lobe_of_left_lung_female_adult_53_years	chr10	93431427	93431476	93431448	-	RAMPAGE_only	3	4	18	0.887627	3.683542	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.944444
upper_lobe_of_left_lung_female_adult_53_years	chr1	162868782	162868783	162868782	-	High_confidence	6	6	9	0.443814	3.000000	chr1	162868436	162870470	LINE|L1|L1PBa1	+	chr1	162854296	162868761	CCDC190|ENST00000367910.5	-	162854296,162855631,162859459,162868652	162855359,162855758,162859658,162868761	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr19	49086488	49086547	49086520	+	High_confidence	18	29	88	4.339512	5.313281	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr19	34860633	34860654	34860653	-	High_confidence	10	10	44	2.169756	4.412941	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.590909
upper_lobe_of_left_lung_female_adult_53_years	chr19	58306115	58306147	58306115	+	High_confidence	7	7	26	1.282128	3.772055	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr1	26284538	26284539	26284538	-	RAMPAGE_only	5	5	8	0.394501	2.521641	chr1	26284514	26284630	SINE|MIR|MIR3	-	chr1	26282304	26298026	UBXN11|ENST00000496466.1	-	26282304,26282648,26282863,26284141,26284361,26285822,26294204,26296918,26297426,26297961	26282569,26282789,26282937,26284281,26285541,26286037,26294331,26296995,26297481,26298026	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr1	166850123	166850228	166850123	+	RAMPAGE_only	29	54	137	6.755830	5.807942	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.992701
upper_lobe_of_left_lung_female_adult_53_years	chr19	34860565	34860595	34860575	-	High_confidence	6	6	17	0.838315	3.616875	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.588235
upper_lobe_of_left_lung_female_adult_53_years	chr7	111940114	111940159	111940114	-	RAMPAGE_only	6	6	23	1.134191	4.095795	chr7	111940063	111940135	LINE|RTE-BovB|MamRTE1	-	chr7	111728273	112004131	DOCK4|ENST00000445943.5	-	111728273,111732225,111735053,111736916,111739133,111739395,111741093,111741539,111742012,111746333,111747266,111755514,111758623,111760180,111765117,111767031,111769528,111778275,111782863,111783856,111784096,111788661,111790456,111808820,111809300,111811873,111822361,111834587,111840762,111844762,111846998,111863371,111867983,111869573,111871989,111872268,111872466,111877029,111895611,111900373,111901676,111915778,111935539,111940109,111944810,111945716,111977131,111984305,111989014,111994134,111998447,112000493,112004047	111728720,111732287,111735167,111736989,111739243,111739477,111741214,111741661,111742132,111746417,111747443,111755601,111758790,111760322,111765222,111767118,111769677,111778369,111782924,111783952,111784123,111788747,111790605,111808879,111809401,111811949,111822456,111834686,111840870,111844897,111847126,111863564,111868154,111869655,111872090,111872352,111872564,111877186,111895718,111900536,111901801,111915904,111935628,111940242,111944871,111945798,111977283,111984390,111989163,111994231,111998503,112000534,112004131	0.913043
upper_lobe_of_left_lung_female_adult_53_years	chr9	120471803	120471824	120471803	-	RAMPAGE_only	2	2	6	0.295876	2.584963	chr9	120471770	120471851	LINE|L2|L2	+	chr9	120389197	120477354	CDK5RAP2|ENST00000416449.5	-	120389197,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477354	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr19	40928748	40928827	40928787	+	RAMPAGE_only	14	16	65	3.205321	5.097153	chr19	40928433	40928789	LTR|ERV1|MER57A-int	-	chr19	40924272	40949234	STRG.186339.3	+	40924272,40928695,40936391,40938968,40941295,40942064,40944330,40944710,40949052	40926620,40936259,40936541,40939129,40941472,40942206,40944518,40944852,40949234	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr8	90006154	90006163	90006154	+	RAMPAGE_only	6	6	10	0.493126	2.947703	chr8	90005695	90006172	LTR|ERVL-MaLR|MSTB1	-	chr8	90001516	90036879	DECR1|ENST00000520227.1	+	90001516,90005447,90017123,90018908,90019085,90020908,90036840	90001561,90005731,90017326,90018966,90019172,90021056,90036879	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr11	93499292	93499344	93499303	-	High_confidence	6	7	23	1.134191	3.788755	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	0.956522
upper_lobe_of_left_lung_female_adult_53_years	chr19	3062922	3062983	3062922	-	High_confidence	23	27	118	5.818890	5.642527	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.949153
upper_lobe_of_left_lung_female_adult_53_years	chr10	121989262	121989263	121989262	+	High_confidence	6	6	8	0.394501	2.807355	chr10	121988759	121989476	LTR|ERV1|MER50	+	chr10	121989262	122079145	TACC2|ENST00000498721.1	+	121989262,122021936,122050437,122078976	121989488,122022014,122050550,122079145	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr12	12635902	12635910	12635909	+	RAMPAGE_only	2	2	7	0.345188	2.584963	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr5	9265625	9265626	9265625	-	High_confidence	5	5	8	0.394501	2.807355	chr5	9265168	9265679	LTR|ERVL|LTR53	+	chr5	9202123	9265545	SEMA5A|ENST00000514923.4	-	9202123,9224673,9226868,9237827,9265433	9202240,9224887,9226967,9237890,9265545	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr2	187529441	187529476	187529441	-	RAMPAGE_only	3	4	17	0.838315	3.875000	chr2	187529293	187529670	LTR|ERVL-MaLR|MLT1B	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.882353
upper_lobe_of_left_lung_female_adult_53_years	chr11	68013669	68013670	68013669	+	RAMPAGE_only	7	7	7	0.345188	2.521641	chr11	68013558	68013779	SINE|MIR|MIRb	-	chr11	68014967	68021522	ALDH3B1|ENST00000617449.4	+	68014967,68015296,68018526,68018772,68019169,68019714,68021484	68015075,68015459,68018637,68018893,68019255,68019796,68021522	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr2	210225579	210225591	210225579	-	High_confidence	22	23	46	2.268381	4.408411	chr2	210225525	210225678	DNA|hAT-Charlie|Charlie24	-	chr2	210187938	210225491	ACADL|ENST00000233710.3	-	210187938,210192803,210195210,210203330,210204580,210205631,210210195,210216346,210217964,210220646,210225186	210189054,210192890,210195338,210203444,210204682,210205796,210210262,210216511,210218102,210220802,210225491	0.978261
upper_lobe_of_left_lung_female_adult_53_years	chr5	35877019	35877080	35877047	+	RAMPAGE_only	18	20	68	3.353259	5.493484	chr5	35876841	35877115	SINE|MIR|MIRb	-	chr5	35856874	35879603	IL7R|NR_120485.1	+	35856874,35860851,35867305,35871055,35875511,35875982	35857059,35860990,35867463,35871213,35875587,35879603	0.985294
upper_lobe_of_left_lung_female_adult_53_years	chr2	105329640	105329674	105329673	-	High_confidence	2	2	7	0.345188	2.807355	chr2	105329666	105329774	LTR|ERV1|LTR2752	-	chr2	105264389	105329714	TGFBRAP1|NM_001142621.2	-	105264389,105269271,105272854,105273543,105275559,105277613,105280381,105284315,105296355,105298510,105307613,105329624	105267559,105269705,105273014,105273690,105275703,105277671,105280723,105284398,105296510,105298705,105308315,105329714	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr4	177444974	177444975	177444974	+	High_confidence	4	5	7	0.345188	2.584963	chr4	177444910	177445732	LTR|ERV1|LTR1A2	+	chr4	177444978	177677126	AC078881.1|ENST00000507023.1	+	177444978,177451474,177593471,177596460,177623658,177675836	177445443,177451590,177593546,177596531,177623802,177677126	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr6	138416315	138416341	138416340	+	RAMPAGE_only	4	4	8	0.394501	2.521641	chr6	138415370	138417293	LTR|ERVL|ERV3-16A3_I-int	+	chr6	138404246	138422120	STRG.88702.1	+	138404246,138405144,138405970,138412879,138415197	138404597,138405280,138406151,138413154,138422120	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr14	53217654	53217676	53217654	+	High_confidence	5	5	9	0.443814	2.641604	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217627	53218228	STRG.156211.1	+	53217627	53218228	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr9	129488803	129488905	129488856	+	High_confidence	18	18	101	4.980576	5.072215	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.990099
upper_lobe_of_left_lung_female_adult_53_years	chr1	89272783	89272883	89272859	-	High_confidence	44	46	434	21.401682	6.380134	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.930876
upper_lobe_of_left_lung_female_adult_53_years	chr3	142684050	142684075	142684050	+	RAMPAGE_only	2	2	9	0.443814	2.725481	chr3	142683987	142684094	LINE|RTE-BovB|MamRTE1	+	chr3	142656896	142713664	PLS1|NM_001172312.1	+	142656896,142664201,142669389,142670992,142676156,142678031,142684005,142684252,142686283,142689617,142694468,142697952,142703867,142704462,142711500,142711871	142657180,142664307,142669553,142671122,142676289,142678113,142684171,142684395,142686376,142689813,142694547,142698067,142704001,142704586,142711625,142713664	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr5	146228877	146228878	146228877	+	RAMPAGE_only	4	4	7	0.345188	2.584963	chr5	146228592	146228912	SINE|Alu|AluJr	-	chr5	146203599	146289223	RBM27|NM_018989.1	+	146203599,146218984,146223402,146228945,146229716,146230656,146233449,146237297,146251710,146254942,146258448,146260744,146261509,146263490,146267648,146269206,146269419,146270953,146271482,146284621,146285946	146203824,146219103,146223527,146229037,146229910,146230917,146233743,146237432,146251875,146255092,146258593,146260898,146261806,146263631,146267768,146269281,146269584,146271058,146271674,146284732,146289223	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr5	9265514	9265549	9265523	-	High_confidence	13	19	83	4.092948	5.273481	chr5	9265168	9265679	LTR|ERVL|LTR53	+	chr5	9202123	9265545	SEMA5A|ENST00000514923.4	-	9202123,9224673,9226868,9237827,9265433	9202240,9224887,9226967,9237890,9265545	0.795181
upper_lobe_of_left_lung_female_adult_53_years	chr4	48805141	48805165	48805164	+	High_confidence	4	4	8	0.394501	3.000000	chr4	48805071	48805471	LTR|ERVL-MaLR|MLT1F	+	chr4	48805211	48850036	OCIAD1|ENST00000504654.5	+	48805211,48830576,48832619,48833400,48842635,48848398,48849946	48805330,48830673,48832682,48833481,48842689,48848446,48850036	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr1	45522858	45522859	45522858	-	High_confidence	7	7	7	0.345188	2.807355	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr4	41435084	41435085	41435084	+	RAMPAGE_only	9	9	11	0.542439	3.121928	chr4	41434957	41435166	LTR|ERVL-MaLR|MLT1D	+	chr4	41419816	41452023	STRG.56277.13	+	41419816,41443277	41443177,41452023	0.818182
upper_lobe_of_left_lung_female_adult_53_years	chr17	36074607	36074611	36074607	+	High_confidence	7	7	14	0.690377	3.392747	chr17	36074286	36074651	DNA|hAT-Charlie|MER58B	+	chr17	36074639	36076774	STRG.175310.1	+	36074639,36076709	36074848,36076774	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr9	68975832	68975855	68975842	-	High_confidence	55	57	172	8.481773	6.194670	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.534884
upper_lobe_of_left_lung_female_adult_53_years	chr11	65429787	65430094	65429787	+	RAMPAGE_only	20	20	350	17.259421	6.802412	chr11	65429592	65429862	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.997143
upper_lobe_of_left_lung_female_adult_53_years	chr19	38289168	38289181	38289168	+	High_confidence	2	4	8	0.394501	2.500000	chr19	38289206	38289513	SINE|Alu|AluSc8	+	chr19	38288405	38292468	SPINT2|ENST00000585357.1	+	38288405,38290536	38290280,38292468	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr10	35449689	35449715	35449714	+	RAMPAGE_only	4	4	8	0.394501	2.521641	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35434110	35501661	CCNY|ENST00000470025.1	+	35434110,35483403,35501500	35434220,35483478,35501661	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr4	128428000	128428006	128428005	+	High_confidence	20	21	33	1.627317	4.625000	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.878788
upper_lobe_of_left_lung_female_adult_53_years	chr3	75362241	75362262	75362257	-	High_confidence	5	5	19	0.936940	3.947703	chr3	75361874	75365929	LTR|ERV1|HERVE-int	-	chr3	75356436	75362268	OR7E22P|ENST00000641370.1	-	75356436,75361951,75362144	75357466,75362039,75362268	0.736842
upper_lobe_of_left_lung_female_adult_53_years	chr14	58054206	58054219	58054218	-	High_confidence	15	22	39	1.923193	4.997670	chr14	58053997	58054183	SINE|MIR|MIR1_Amn	-	chr14	58001150	58054208	STRG.156989.1	-	58001150,58005047,58012118,58054115	58004804,58005182,58012150,58054208	0.820513
upper_lobe_of_left_lung_female_adult_53_years	chr2	159428333	159428376	159428356	-	RAMPAGE_only	41	43	76	3.747760	5.426734	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr4	56657793	56657817	56657793	-	RAMPAGE_only	3	3	15	0.739689	3.521641	chr4	56657736	56657851	SINE|MIR|MIR3	-	chr4	56647997	56656525	HOPX|ENST00000556614.6	-	56647997,56655856,56656343	56648797,56656012,56656525	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr1	15526459	15526465	15526459	-	High_confidence	3	3	9	0.443814	2.947703	chr1	15526347	15526477	SINE|MIR|MIR3	+	chr1	15518135	15526534	CASP9|ENST00000469637.1	-	15518135,15519880,15526190	15518395,15520001,15526534	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr5	42825893	42825905	42825897	-	High_confidence	30	45	100	4.931263	5.276003	chr5	42825250	42825999	LTR|ERV1|LTR1F	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.960000
upper_lobe_of_left_lung_female_adult_53_years	chr3	197458401	197458402	197458401	+	High_confidence	22	23	25	1.232816	4.334963	chr3	197458272	197458415	DNA|hAT-Tip100|MER91A	+	chr3	197458404	197467105	AC128709.3|ENST00000420213.1	+	197458404,197466617	197458542,197467105	0.680000
upper_lobe_of_left_lung_female_adult_53_years	chr13	112509335	112509367	112509353	-	RAMPAGE_only	3	3	12	0.591752	3.459432	chr13	112509095	112509402	LINE|L2|L2c	+	chr13	112485843	112489823	TUBGCP3|ENST00000469302.1	-	112485843,112489580	112486151,112489823	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr10	60205794	60205840	60205797	-	RAMPAGE_only	3	3	21	1.035565	3.997670	chr10	60205553	60205752	SINE|tRNA-RTE|MamSINE1	-	chr10	60026297	60389730	ANK3|ENST00000280772.6	-	60026297,60042671,60055657,60059339,60063110,60064156,60067934,60068636,60080536,60082149,60082614,60083491,60084601,60085156,60086676,60088146,60105904,60108829,60114224,60134270,60138963,60166590,60166823,60172307,60172899,60173087,60181328,60186714,60196144,60196526,60198339,60200128,60203001,60205791,60208035,60213411,60234687,60261858,60263834,60270130,60278773,60279049,60279537,60389424	60029826,60042759,60056036,60059430,60063254,60064288,60068009,60076448,60080618,60082176,60082737,60083617,60084830,60085253,60086884,60088358,60106059,60109054,60114331,60134373,60139087,60166653,60166896,60172403,60172998,60173186,60181427,60186912,60196243,60196625,60198537,60200227,60203100,60205890,60208233,60213510,60234786,60261957,60264020,60270229,60278872,60279148,60279639,60389730	0.904762
upper_lobe_of_left_lung_female_adult_53_years	chr3	50230995	50230996	50230995	+	High_confidence	16	16	16	0.789002	3.875000	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr2	37929513	37929533	37929513	+	High_confidence	3	3	12	0.591752	3.251629	chr2	37929546	37929613	LINE|L1|HAL1M8	+	chr2	37928758	38017744	RMDN2|ENST00000406384.5	+	37928758,37929261,37974039,37975211,37981282,37989540,37991219,37997415,38003990,38004135,38017185	37928936,37929729,37974214,37975314,37981343,37989616,37991297,37997514,38004044,38004216,38017744	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr2	37973919	37973940	37973939	+	High_confidence	7	7	22	1.084878	4.106603	chr2	37973395	37973996	LINE|L2|L2a	-	chr2	37974690	37989610	RMDN2|ENST00000496735.1	+	37974690,37981282,37989540	37975314,37981343,37989610	0.590909
upper_lobe_of_left_lung_female_adult_53_years	chr8	102930162	102930183	102930162	+	High_confidence	19	19	66	3.254634	5.525233	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.924242
upper_lobe_of_left_lung_female_adult_53_years	chr9	127653782	127653797	127653782	+	RAMPAGE_only	2	2	11	0.542439	3.095795	chr9	127653827	127654016	LINE|L2|L2b	+	chr9	127651623	127684513	STXBP1|ENST00000647107.1	+	127651623,127653714,127658374,127660029,127661101,127663204,127665246,127666165,127668079,127669897,127672050,127673180,127675803,127676643,127678430,127680156,127682405,127683917,127684367	127651652,127653796,127658451,127660108,127661205,127663353,127665331,127666296,127668187,127669958,127672116,127673261,127675942,127676753,127678532,127680242,127682560,127683970,127684513	0.545455
upper_lobe_of_left_lung_female_adult_53_years	chr3	48924759	48924796	48924762	+	High_confidence	2	2	10	0.493126	2.947703	chr3	48924715	48924993	SINE|Alu|AluSc8	-	chr3	48924715	48945181	ARIH2|ENST00000463204.5	+	48924715,48927461,48945135	48924839,48927813,48945181	0.800000
upper_lobe_of_left_lung_female_adult_53_years	chr2	231403987	231404005	231403987	+	High_confidence	3	3	7	0.345188	2.584963	chr2	231401206	231405702	LTR|ERV1|HERVE-int	+	chr2	231403899	231404819	STRG.35165.1	+	231403899	231404819	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr15	55513698	55513716	55513698	-	RAMPAGE_only	7	7	15	0.739689	3.773557	chr15	55513405	55516274	LTR|ERV1|HERVE_a-int	-	chr15	55417754	55508234	DYX1C1|NM_001033560.1	-	55417754,55434904,55439471,55450221,55466929,55491122,55497711,55498206,55508121	55418133,55435058,55439581,55450367,55467161,55491256,55497859,55498584,55508234	0.600000
upper_lobe_of_left_lung_female_adult_53_years	chr6	127330892	127330952	127330928	-	High_confidence	5	7	45	2.219068	4.774861	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.866667
upper_lobe_of_left_lung_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	88	88	88	4.339512	5.694838	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr6	144926663	144926718	144926663	-	RAMPAGE_only	20	21	109	5.375077	5.975003	chr6	144926565	144926713	LTR|ERV1|HERVH-int	+	chr6	144884657	144885328	STRG.89184.1	-	144884657	144885328	0.550459
upper_lobe_of_left_lung_female_adult_53_years	chr15	89198515	89198552	89198551	+	RAMPAGE_only	3	3	7	0.345188	2.807355	chr15	89198595	89198679	SINE|MIR|MIR3	+	chr15	89088149	89202360	ABHD2|NM_007011.7	+	89088149,89090282,89102499,89103902,89104181,89113724,89116321,89151676,89155366,89175811,89185423,89188192,89191079,89193234,89195226	89088563,89090372,89102576,89104044,89104270,89113824,89116521,89151852,89155534,89175995,89185516,89188303,89191149,89193319,89202360	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr2	86482561	86482671	86482577	+	RAMPAGE_only	36	36	73	3.599822	5.388053	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.602740
upper_lobe_of_left_lung_female_adult_53_years	chr10	79614495	79614496	79614495	-	RAMPAGE_only	14	14	14	0.690377	3.521641	chr10	79614399	79614474	SINE|MIR|MIR3	-	chr10	79555851	79560461	SFTPA2|NM_001320813.1	-	79555851,79558051,79558885,79559311,79559968,79560363	79557585,79558129,79559005,79559509,79559998,79560461	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr10	17216349	17216353	17216349	-	RAMPAGE_only	4	4	8	0.394501	2.750000	chr10	17216274	17216354	LTR|ERV1|HERVIP10FH-int	+	chr10	17214238	17226898	VIM-AS1|ENST00000437232.5	-	17214238,17216166,17217601,17226855	17215364,17216274,17217675,17226898	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr3	191359200	191359201	191359200	+	RAMPAGE_only	5	6	6	0.295876	2.584963	chr3	191359182	191359658	LINE|L2|L2c	-	chr3	191361102	191398670	STRG.52865.3	+	191361102,191369918,191375061,191380686,191380827,191382745,191389495,191391740	191361159,191370036,191380274,191380731,191380932,191382825,191389602,191398670	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr19	40926416	40926417	40926416	+	RAMPAGE_only	4	5	7	0.345188	2.584963	chr19	40926161	40926571	LTR|ERVL-MaLR|THE1D	-	chr19	40924272	40949234	STRG.186339.3	+	40924272,40928695,40936391,40938968,40941295,40942064,40944330,40944710,40949052	40926620,40936259,40936541,40939129,40941472,40942206,40944518,40944852,40949234	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr19	12800944	12801007	12800944	-	High_confidence	3	3	20	0.986253	3.892407	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.850000
upper_lobe_of_left_lung_female_adult_53_years	chr19	17336685	17336727	17336685	+	High_confidence	22	23	84	4.142261	5.483256	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.904762
upper_lobe_of_left_lung_female_adult_53_years	chr3	101692717	101692718	101692717	+	RAMPAGE_only	4	4	7	0.345188	2.584963	chr3	101691892	101692861	LTR|ERVK|LTR5_Hs	+	chr3	101688114	101700893	STRG.43849.5	+	101688114	101700893	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr2	24301762	24301763	24301762	-	RAMPAGE_only	6	6	7	0.345188	2.584963	chr2	24301523	24301822	SINE|Alu|AluJr4	-	chr2	24202866	24328118	ITSN2|ENST00000622089.4	-	24202866,24204244,24205213,24208236,24209099,24209817,24210779,24212649,24216048,24217906,24220944,24246128,24246796,24248628,24248836,24252344,24254366,24257887,24261105,24261560,24270670,24271765,24275712,24286211,24293687,24295663,24298664,24299908,24301153,24301964,24303798,24308616,24310283,24310488,24312211,24313459,24315131,24328051,24328103	24203783,24204418,24205297,24208319,24209221,24210033,24210947,24212748,24216232,24218013,24221066,24246320,24246893,24248750,24248882,24252511,24254431,24258093,24261250,24261742,24270768,24271941,24275849,24286351,24293775,24295804,24298814,24300171,24301239,24302102,24303862,24308756,24310380,24310692,24312375,24313523,24315224,24328100,24328118	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr3	52615423	52615438	52615437	-	High_confidence	4	4	8	0.394501	2.807355	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr4	152412488	152412529	152412488	-	High_confidence	11	11	35	1.725942	4.879143	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr5	56160917	56160921	56160917	-	High_confidence	4	4	12	0.591752	3.584963	chr5	56160851	56161074	SINE|MIR|MIR	+	chr5	56111577	56160929	ANKRD55|ENST00000505970.2	-	56111577,56114202,56116614,56143800,56156945,56159832,56160787	56111782,56114300,56116782,56143929,56156995,56159893,56160929	0.583333
upper_lobe_of_left_lung_female_adult_53_years	chr8	47998234	47998262	47998234	+	RAMPAGE_only	2	2	12	0.591752	2.855389	chr8	47995253	47998768	LTR|ERV1|HERVFH21-int	-	chr8	48008399	48064708	UBE2V2|ENST00000523111.6	+	48008399,48043032,48049852,48060681	48008470,48043181,48049978,48064708	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr3	114759276	114759277	114759276	-	High_confidence	9	10	14	0.690377	3.392747	chr3	114759122	114759230	LINE|CR1|L3b	-	chr3	114314499	114759277	ZBTB20|NM_001164344.2	-	114314499,114350273,114380216,114389004,114500351,114693527,114710267,114758895	114339426,114351878,114380404,114389105,114500391,114693575,114710313,114759277	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr1	160951451	160951493	160951451	-	High_confidence	20	20	61	3.008071	5.299972	chr1	160951407	160951550	LTR|ERVL|LTR40b	+	chr1	160944399	160951474	STRG.11387.1	-	160944399,160947928,160950045,160950552,160951042	160945292,160948032,160950166,160950711,160951474	0.934426
upper_lobe_of_left_lung_female_adult_53_years	chr3	52482654	52482667	52482666	+	RAMPAGE_only	3	4	11	0.542439	3.321928	chr3	52482568	52482694	DNA|TcMar-Tc2|Kanga1c	+	chr3	52455618	52493068	STRG.40955.3	+	52455618,52457842,52458661,52470858,52471813,52472302,52473733,52476446,52477573,52478096,52478448,52479748,52480183,52480878,52485777,52487195,52489335,52490074,52490704,52491351,52491871	52455734,52457926,52458844,52470907,52471977,52472398,52473829,52476599,52477642,52478282,52478577,52479862,52480295,52484637,52485827,52488605,52489678,52490231,52490833,52491513,52493068	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr2	237546145	237546161	237546147	+	High_confidence	3	5	9	0.443814	3.169925	chr2	237545882	237546379	LTR|ERV1|MER4A	-	chr2	237546404	237553843	MLPH|ENST00000477457.1	+	237546404,237549220,237552336,237553565	237546683,237549278,237552437,237553843	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr5	90637879	90637883	90637879	+	RAMPAGE_only	2	2	6	0.295876	2.584963	chr5	90637833	90637939	LINE|CR1|X6A_LINE	-	chr5	90640717	90708909	ADGRV1|ENST00000640403.1	+	90640717,90642635,90642855,90643802,90644705,90645967,90647497,90651603,90652345,90653220,90657904,90672545,90674053,90675242,90676079,90679548,90681314,90683585,90685779,90689860,90690796,90692604,90693889,90696936,90703664,90704388,90705399,90706230,90708815	90640868,90642762,90643041,90643983,90644869,90646091,90647764,90651730,90652563,90653952,90658278,90672722,90674234,90675445,90676209,90679629,90681454,90684195,90685995,90690076,90691041,90692786,90694701,90697146,90703795,90704488,90705579,90706394,90708909	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr15	45160485	45160510	45160485	+	RAMPAGE_only	16	17	48	2.367006	4.857676	chr15	45160430	45160675	LINE|L2|L2a	-	chr15	45138817	45165573	DUOX1|ENST00000561166.1	+	45138817,45139426,45140894,45141291,45141974,45143189,45144035,45144894,45147432,45147903,45148271,45150631,45151122,45151873,45152285,45153379,45153950,45155801,45160836,45161737,45162218,45163531,45163789,45164778	45139244,45139599,45141070,45141410,45142112,45143303,45144235,45145080,45147658,45147997,45148447,45150701,45151248,45152052,45152516,45153479,45154000,45155929,45160990,45161970,45162377,45163687,45163918,45165573	0.958333
upper_lobe_of_left_lung_female_adult_53_years	chr11	62405084	62405107	62405106	+	High_confidence	5	5	14	0.690377	2.807390	chr11	62404832	62405355	LINE|L2|L2a	-	chr11	62405102	62423195	SCGB1A1|ENST00000534397.5	+	62405102,62416563,62422220,62423058	62405169,62416637,62422408,62423195	0.785714
upper_lobe_of_left_lung_female_adult_53_years	chr9	125337368	125337392	125337374	+	RAMPAGE_only	5	8	18	0.887627	3.969816	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125302209	125363025	STRG.119324.8	+	125302209,125305062,125307412,125307690,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125335171,125337017,125337220,125341176,125342218,125346818,125350294,125350712,125354653,125355643,125359419,125360527,125362605	125302826,125305149,125307547,125307880,125312612,125321499,125323923,125326589,125330218,125332060,125332629,125335252,125337095,125337591,125341264,125342299,125349519,125350404,125350872,125354841,125355857,125359492,125360725,125363025	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chrX	97119995	97120021	97120020	+	RAMPAGE_only	4	5	14	0.690377	3.664498	chrX	97118912	97120566	LINE|L1|L1PBa1	-	chrX	96685016	97469765	DIAPH2|ENST00000373054.5	+	96685016,96735757,96738585,96758153,96763099,96881578,96912327,96912482,96916437,96918508,96930732,96937232,96939265,96942017,96945526,96948934,96957827,96965092,97072940,97075166,97099693,97114725,97141664,97247714,97348117,97383908,97429649,97469693	96685190,96735790,96738762,96758258,96763120,96881718,96912402,96912552,96916574,96918617,96930843,96937351,96939382,96942136,96945591,96949039,96958148,96965207,97073042,97075261,97099795,97114965,97141794,97247841,97348280,97384044,97429745,97469765	0.785714
upper_lobe_of_left_lung_female_adult_53_years	chr14	87734295	87734298	87734297	-	High_confidence	8	11	13	0.641064	3.546594	chr14	87733892	87735317	LTR|ERV1|LTR12C	-	chr14	87725954	87734298	AL359237.1|ENST00000556168.1	-	87725954,87733867	87726010,87734298	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr18	7946878	7946898	7946878	+	High_confidence	78	79	181	8.925586	6.165764	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.861878
upper_lobe_of_left_lung_female_adult_53_years	chr10	122127024	122127025	122127024	+	High_confidence	4617	4637	5126	252.776548	7.224358	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122127021	122204183	STRG.128013.11	+	122127021,122132608,122195039,122201304	122127142,122132734,122201259,122204183	0.663870
upper_lobe_of_left_lung_female_adult_53_years	chr18	46087037	46087053	46087042	-	High_confidence	4	4	15	0.739689	2.985228	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.933333
upper_lobe_of_left_lung_female_adult_53_years	chr14	31247596	31247621	31247620	+	High_confidence	16	17	36	1.775255	4.214997	chr14	31247584	31247734	LTR|ERV1|HERVH-int	-	chr14	31247656	31248526	STRG.154382.1	+	31247656	31248526	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr8	30812434	30812459	30812453	-	High_confidence	12	12	58	2.860133	5.352094	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.948276
upper_lobe_of_left_lung_female_adult_53_years	chr18	976648	976699	976686	+	High_confidence	2	2	11	0.542439	3.121928	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976696	1159311	AP005328.1|ENST00000579835.5	+	976696,1061462,1133842,1137813,1159178	976895,1061535,1133894,1137864,1159311	0.636364
upper_lobe_of_left_lung_female_adult_53_years	chr3	129052227	129052236	129052227	-	High_confidence	2	2	8	0.394501	3.000000	chr3	129051924	129052338	LTR|ERVL-MaLR|MLT1F1	+	chr3	129032436	129052189	STRG.47485.1	-	129032436,129051971	129032511,129052189	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr12	132782313	132782352	132782351	-	High_confidence	5	5	11	0.542439	3.277613	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132768914	132782753	STRG.148586.7	-	132768914,132774156,132775140,132776633,132777665,132780797,132782295	132773294,132774320,132775305,132777090,132777805,132780914,132782753	0.909091
upper_lobe_of_left_lung_female_adult_53_years	chr3	28347646	28347654	28347653	-	High_confidence	18	18	28	1.380754	4.593069	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr1	97904654	97904676	97904654	-	RAMPAGE_only	33	37	97	4.783325	5.763032	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.721649
upper_lobe_of_left_lung_female_adult_53_years	chr19	51350355	51350380	51350355	-	RAMPAGE_only	2	2	10	0.493126	3.169925	chr19	51350351	51350414	LINE|CR1|L3	+	chr19	51345154	51354842	ETFB|NM_001014763.1	-	51345154,51346899,51350328,51353131,51354149	51345381,51347058,51350391,51353290,51354842	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr9	129489073	129489126	129489125	+	High_confidence	5	8	38	1.873880	4.682162	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.789474
upper_lobe_of_left_lung_female_adult_53_years	chr2	169329881	169329892	169329885	-	RAMPAGE_only	28	38	73	3.599822	5.806263	chr2	169329820	169330167	DNA|hAT-Charlie|MER1B	+	chr2	169127108	169362534	LRP2|ENST00000649046.1	-	169127108,169129012,169132573,169137391,169138576,169139250,169139542,169140454,169142673,169145746,169146738,169150897,169152798,169154459,169156273,169157370,169162471,169165931,169168538,169169701,169170550,169172014,169173095,169173918,169175192,169176410,169177802,169181447,169182166,169185502,169187969,169191831,169193760,169196910,169198785,169201627,169202755,169203981,169205478,169206022,169206329,169209452,169211967,169213656,169216252,169220453,169225309,169226421,169231713,169233410,169235839,169237102,169238090,169239526,169240987,169242955,169243402,169244692,169246704,169247377,169256105,169257123,169259024,169270903,169272926,169275035,169277744,169279371,169280349,169282872,169289025,169290844,169292252,169294147,169294599,169307280,169318761,169320776,169362320	169128830,169129084,169132681,169137493,169138706,169139371,169139610,169140545,169142793,169145923,169146959,169151026,169152964,169154603,169156405,169157502,169162600,169166054,169168676,169169818,169170667,169172134,169173224,169174164,169175389,169176588,169178026,169181618,169182319,169186019,169188265,169192033,169193892,169197030,169198911,169201870,169202959,169204271,169205637,169206188,169207250,169209641,169212207,169213870,169216430,169220563,169225453,169226588,169231842,169233588,169236068,169237287,169238302,169239775,169241365,169243072,169243522,169244932,169246986,169247515,169256236,169257249,169259217,169271107,169273067,169275238,169277951,169279595,169280519,169283001,169289145,169290997,169292369,169294261,169294710,169307397,169318884,169320884,169362534	0.972603
upper_lobe_of_left_lung_female_adult_53_years	chr15	41278886	41278887	41278886	+	RAMPAGE_only	17	17	23	1.134191	3.762267	chr15	41278930	41279226	SINE|Alu|AluSg	+	chr15	41231238	41281887	CHP1|NM_007236.4	+	41231238,41243666,41256909,41262755,41270556,41278766,41279335	41231449,41243739,41256990,41262883,41270618,41278889,41281887	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr3	44439839	44439875	44439874	-	RAMPAGE_only	9	10	39	1.923193	4.471354	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431719	44477670	ZNF445|ENST00000396077.7	-	44431719,44449512,44450446,44450867,44451313,44455120,44458243,44477590	44448739,44449623,44450573,44450962,44451482,44455696,44458364,44477670	0.538462
upper_lobe_of_left_lung_female_adult_53_years	chr3	188947236	188947237	188947236	+	High_confidence	5	5	7	0.345188	2.807355	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947235	189004978	STRG.52691.3	+	188947235,189000773,189004542	188947425,189000911,189004978	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr22	39472691	39472725	39472691	+	High_confidence	2	2	9	0.443814	2.750000	chr22	39472644	39472728	SINE|MIR|MIRb	-	chr22	39472787	39487830	MGAT3|ENST00000429402.1	+	39472787,39487346	39472872,39487830	0.666667
upper_lobe_of_left_lung_female_adult_53_years	chr2	174410277	174410330	174410286	+	High_confidence	7	12	60	2.958758	4.856995	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.766667
upper_lobe_of_left_lung_female_adult_53_years	chr6	152657911	152657922	152657921	+	High_confidence	9	9	19	0.936940	3.836592	chr6	152657888	152658335	LTR|ERVL-MaLR|MLT1C	-	chr6	152657937	152668421	STRG.89911.1	+	152657937,152667598,152668055	152658244,152667680,152668421	0.789474
upper_lobe_of_left_lung_female_adult_53_years	chr19	44914359	44914367	44914359	+	High_confidence	2	3	7	0.345188	2.807355	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914246	44919342	APOC1|ENST00000588750.5	+	44914246,44914671,44914871,44916189,44919172	44914489,44914733,44914949,44916325,44919342	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr16	19393608	19393620	19393619	-	High_confidence	3	6	10	0.493126	2.921928	chr16	19393474	19393581	LINE|L2|L2a	-	chr16	19392212	19393468	AC130456.7|ENST00000623838.1	-	19392212	19393468	0.800000
upper_lobe_of_left_lung_female_adult_53_years	chr7	7566038	7566057	7566038	-	High_confidence	3	5	9	0.443814	2.947703	chr7	7565778	7566082	SINE|Alu|AluSc	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr21	29077486	29077501	29077486	+	High_confidence	11	11	24	1.183503	3.386842	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr5	151687244	151687252	151687244	-	High_confidence	2	2	8	0.394501	2.807355	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr12	8681580	8681600	8681599	+	High_confidence	12	12	19	0.936940	4.142664	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8783085	STRG.139123.5	+	8681599,8713810,8749861,8751956,8753889,8773320,8776766,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8780739,8783085	0.736842
upper_lobe_of_left_lung_female_adult_53_years	chr14	23612331	23612363	23612362	+	High_confidence	9	9	15	0.739689	3.521641	chr14	23612270	23612982	LINE|L2|L2a	-	chr14	23612537	23626649	STRG.153948.1	+	23612537,23612714,23619202,23626590	23612609,23612860,23619351,23626649	0.733333
upper_lobe_of_left_lung_female_adult_53_years	chr12	31959158	31959194	31959191	+	High_confidence	5	5	25	1.232816	4.175736	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959369	31992834	KIAA1551|ENST00000541981.5	+	31959369,31960776,31992377	31959491,31960871,31992834	0.640000
upper_lobe_of_left_lung_female_adult_53_years	chr1	52914056	52914057	52914056	-	High_confidence	4	4	6	0.295876	2.584963	chr1	52913984	52914299	LINE|L2|L2b	-	chr1	52904788	52914077	ECHDC2|ENST00000487851.5	-	52904788,52907867,52911565,52911722,52913894	52904833,52907954,52911653,52911790,52914077	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr2	179266213	179266270	179266213	-	High_confidence	27	31	80	3.945010	5.794101	chr2	179265669	179266289	LINE|L2|L2b	+	chr2	179264999	179266226	STRG.31419.1	-	179264999	179266226	0.612500
upper_lobe_of_left_lung_female_adult_53_years	chr20	8600725	8600749	8600738	+	High_confidence	4	4	16	0.789002	2.780639	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600725	8788523	PLCB1|ENST00000626966.2	+	8600725,8628293,8646101,8647899,8649373,8657183,8658537,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448	8600781,8628431,8646181,8647953,8649449,8657284,8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788523	0.750000
upper_lobe_of_left_lung_female_adult_53_years	chr7	7566512	7566534	7566514	-	High_confidence	62	91	186	9.172149	6.623445	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.553763
upper_lobe_of_left_lung_female_adult_53_years	chr8	144106344	144106358	144106357	+	High_confidence	6	7	14	0.690377	3.182006	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr3	134485443	134485494	134485443	-	High_confidence	9	10	47	2.317694	4.661263	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.617021
upper_lobe_of_left_lung_female_adult_53_years	chr5	78549164	78549185	78549184	-	High_confidence	3	3	6	0.295876	2.584963	chr5	78548966	78549452	LTR|ERVL-MaLR|MLT1H	-	chr5	78485214	78549151	LHFPL2|ENST00000515007.6	-	78485214,78509783,78549025	78489153,78510398,78549151	0.500000
upper_lobe_of_left_lung_female_adult_53_years	chr17	2667103	2667196	2667195	+	High_confidence	24	24	58	2.860133	5.313423	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.896552
upper_lobe_of_left_lung_female_adult_53_years	chr19	48868595	48868631	48868613	-	High_confidence	121	145	692	34.124341	7.425694	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48865571	48868606	STRG.187328.1	-	48865571,48867536,48868082	48865610,48867626,48868606	0.994220
upper_lobe_of_left_lung_female_adult_53_years	chr13	79277622	79277679	79277635	-	High_confidence	24	24	132	6.509267	5.268017	chr13	79277528	79277676	LTR|ERV1|HERVH-int	+	chr13	79277008	79277676	STRG.151976.2	-	79277008	79277676	0.931818
upper_lobe_of_left_lung_female_adult_53_years	chr3	138473016	138473036	138473035	+	High_confidence	3	3	7	0.345188	2.807355	chr3	138473065	138473110	SINE|MIR|MIR3	+	chr3	138473153	138481686	ESYT3|ENST00000460133.1	+	138473153,138474282,138476222,138476442,138477773	138473634,138474352,138476328,138476492,138481686	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chrX	74220933	74221047	74220933	-	RAMPAGE_only	10	10	62	3.057383	4.968917	chrX	74220738	74221109	LINE|L2|L2c	+	chrX	74219897	74292340	STRG.203193.5	-	74219897,74280393,74280930,74281701,74292168	74274410,74280494,74281085,74281848,74292340	0.967742
upper_lobe_of_left_lung_female_adult_53_years	chr14	32402135	32402136	32402135	+	RAMPAGE_only	7	7	7	0.345188	2.807355	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32433163	32439032	AKAP6|ENST00000554449.1	+	32433163,32438673	32433817,32439032	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr1	54851879	54851942	54851941	-	RAMPAGE_only	39	39	148	7.298269	5.820676	chr1	54851851	54852077	SINE|MIR|MIRb	-	chr1	54849663	54886890	DHCR24|ENST00000648712.1	-	54849663,54853433,54854036,54865302,54871349,54875092,54875941,54879059,54883617,54886801	54852386,54853612,54854234,54865446,54871613,54875211,54876047,54879319,54883773,54886890	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr18	49872174	49872175	49872174	-	RAMPAGE_only	5	5	7	0.345188	2.584963	chr18	49871998	49872125	SINE|MIR|MIR3	-	chr18	49826259	49902833	MYO5B|ENST00000324581.10	-	49826259,49835343,49836710,49837516,49839143,49841364,49843240,49847145,49849566,49853448,49863226,49864140,49872166,49875686,49877762,49878944,49880370,49894940,49902593	49826623,49835424,49836885,49837802,49839294,49841454,49843392,49847289,49849660,49853647,49863327,49864380,49872232,49875827,49877882,49879090,49880455,49895174,49902833	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr4	184382224	184382244	184382224	-	RAMPAGE_only	2	2	7	0.345188	2.521641	chr4	184382179	184382738	LTR|ERVL|LTR67B	+	chr4	184376287	184383409	STRG.65236.1	-	184376287,184382133	184379129,184383409	0.571429
upper_lobe_of_left_lung_female_adult_53_years	chr19	16891541	16891598	16891597	+	RAMPAGE_only	35	36	68	3.353259	4.824985	chr19	16891466	16891771	SINE|Alu|AluSx1	+	chr19	16889014	16892019	F2RL3|NM_003950.2	+	16889014,16889572	16889298,16892019	0.985294
upper_lobe_of_left_lung_female_adult_53_years	chr16	28688553	28688578	28688553	+	High_confidence	2	3	11	0.542439	2.663533	chr16	28688394	28688869	LTR|ERVL|LTR41B	+	chr16	28688557	28735730	EIF3C|NM_001199142.1	+	28688557,28711656,28713700,28713908,28714320,28714635,28714818,28715306,28723163,28723447,28724321,28724657,28724918,28726604,28727020,28731828,28734519,28734777,28734931,28735172,28735430	28688828,28711787,28713766,28714098,28714446,28714690,28714928,28715434,28723323,28723551,28724463,28724783,28725012,28726795,28727245,28732192,28734679,28734843,28735019,28735335,28735730	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr17	41871793	41871805	41871793	-	RAMPAGE_only	1	1	7	0.345188	2.584963	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr14	73463608	73463625	73463624	-	High_confidence	12	12	25	1.232816	4.349649	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73366896	73463625	AC005280.3|ENST00000556700.5	-	73366896,73409936,73462528,73463474	73366981,73410068,73462689,73463625	0.520000
upper_lobe_of_left_lung_female_adult_53_years	chr12	51404139	51404140	51404139	+	High_confidence	7	7	7	0.345188	2.521641	chr12	51404013	51404316	LTR|Gypsy|MamGyp-int	+	chr12	51404116	51470634	STRG.143102.1	+	51404116,51440707,51450875,51452123,51453538,51457350,51458558,51459950,51461203,51462309,51463613,51469613,51470391	51404205,51440789,51451022,51452259,51453699,51457539,51458650,51460108,51461291,51462456,51463714,51469788,51470634	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr12	110440313	110440324	110440313	-	RAMPAGE_only	8	8	13	0.641064	3.546594	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.923077
upper_lobe_of_left_lung_female_adult_53_years	chr12	79542364	79542405	79542399	-	RAMPAGE_only	6	7	25	1.232816	4.323856	chr12	79540300	79543266	LTR|ERV1|HERVH-int	+	chr12	79505637	79543574	STRG.145300.3	-	79505637	79543574	0.520000
upper_lobe_of_left_lung_female_adult_53_years	chr7	99208106	99208119	99208118	-	High_confidence	4	6	9	0.443814	2.750000	chr7	99208098	99208244	SINE|Alu|AluSx3	-	chr7	99173573	99207506	KPNA7|ENST00000327442.6	-	99173573,99177919,99181882,99184928,99188299,99193018,99195069,99196083,99203105,99207400	99173794,99178066,99182065,99185162,99188563,99193101,99195338,99196166,99203240,99207506	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr12	79542275	79542281	79542275	-	RAMPAGE_only	5	5	11	0.542439	2.646439	chr12	79540300	79543266	LTR|ERV1|HERVH-int	+	chr12	79505637	79543574	STRG.145300.3	-	79505637	79543574	0.818182
upper_lobe_of_left_lung_female_adult_53_years	chr8	144103564	144103603	144103602	-	High_confidence	2	2	7	0.345188	2.807355	chr8	144103289	144103558	SINE|MIR|MIR	-	chr8	144098749	144103756	STRG.111338.4	-	144098749,144099276,144099509,144099702,144099928,144103050,144103552	144098788,144099430,144099618,144099844,144100069,144103225,144103756	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr5	38881722	38881764	38881722	+	RAMPAGE_only	3	3	11	0.542439	3.459432	chr5	38881676	38881753	SINE|tRNA-Deu|AmnSINE2	+	chr5	38871841	38889387	STRG.67019.6	+	38871841,38883826,38885348,38886038	38881764,38884111,38885484,38889387	0.818182
upper_lobe_of_left_lung_female_adult_53_years	chr7	128984187	128984216	128984195	-	RAMPAGE_only	2	2	9	0.443814	3.000000	chr7	128983986	128984151	LINE|L1|L1M5	-	chr7	128957222	129054883	TNPO3|ENST00000471166.1	-	128957222,128967279,128970147,128972425,128974867,128975818,128978982,128979970,128982247,128984167,128986728,128989960,128991998,128993806,128997388,129000428,129001058,129005015,129014978,129016982,129017956,129054650	128957315,128967392,128970315,128972582,128974962,128975935,128979123,128980031,128982324,128984259,128986920,128990202,128992090,128993914,128997535,129000567,129001234,129005159,129015135,129017056,129018157,129054883	0.888889
upper_lobe_of_left_lung_female_adult_53_years	chr12	112506688	112506718	112506707	+	RAMPAGE_only	4	4	10	0.493126	3.169925	chr12	112506599	112506946	LTR|ERVL-MaLR|MLT1H	-	chr12	112418913	112509913	PTPN11|ENST00000351677.6	+	112418913,112446275,112450317,112453194,112454563,112455949,112472943,112477650,112477856,112482073,112486474,112488442,112489023,112502143,112504694,112505824	112419125,112446398,112450512,112453387,112454680,112456063,112473040,112477730,112478015,112482205,112486629,112488510,112489175,112502256,112504796,112509913	0.900000
upper_lobe_of_left_lung_female_adult_53_years	chr5	96979721	96979763	96979739	+	RAMPAGE_only	3	3	12	0.591752	2.594907	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	0.916667
upper_lobe_of_left_lung_female_adult_53_years	chr3	151769980	151770046	151770032	-	High_confidence	10	11	86	4.240886	5.744568	chr3	151769755	151770055	SINE|Alu|AluSx	+	chr3	151534641	151770011	STRG.49345.6	-	151534641,151581538,151600746,151751442,151769600	151539262,151581654,151600951,151751511,151770011	0.813953
upper_lobe_of_left_lung_female_adult_53_years	chr2	179265711	179265712	179265711	-	High_confidence	79	79	81	3.994323	5.531708	chr2	179265669	179266289	LINE|L2|L2b	+	chr2	179264999	179266226	STRG.31419.1	-	179264999	179266226	0.950617
upper_lobe_of_left_lung_female_adult_53_years	chr4	185287360	185287361	185287360	+	RAMPAGE_only	9	9	10	0.493126	2.947703	chr4	185287289	185287386	DNA|hAT-Charlie|MER5B	-	chr4	185210078	185363966	SNX25|ENST00000264694.12	+	185210078,185247293,185258847,185264437,185266968,185288011,185310634,185320732,185323527,185332594,185339378,185341975,185346536,185351444,185353484,185357670,185361923,185362610,185363384	185210255,185247378,185259064,185264610,185267155,185288082,185310816,185320864,185323800,185332759,185339510,185342116,185346650,185351609,185353602,185357737,185362105,185362711,185363966	0.700000
upper_lobe_of_left_lung_female_adult_53_years	chr3	139344537	139344574	139344547	+	High_confidence	13	13	31	1.528692	4.607264	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	1.000000
upper_lobe_of_left_lung_female_adult_53_years	chr11	134467284	134467293	134467292	+	High_confidence	4	4	9	0.443814	2.750000	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134466503	134470066	STRG.137879.1	+	134466503,134467864,134469486	134467615,134467987,134470066	0.777778
upper_lobe_of_left_lung_female_adult_53_years	chr1	78620056	78620058	78620056	+	High_confidence	3	6	6	0.295876	2.584963	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr19	10564937	10564938	10564937	-	RAMPAGE_only	5	5	8	0.394501	2.521641	chr19	10564755	10564893	SINE|MIR|MIRb	-	chr19	10553575	10565971	KRI1|ENST00000478863.5	-	10553575,10555086,10555284,10557551,10557971,10558163,10559358,10559612,10559809,10560311,10561002,10561168,10561666,10561790,10562728,10564928,10565716,10565905	10554281,10555185,10555349,10557895,10558060,10558239,10559529,10559708,10559936,10560448,10561080,10561265,10561716,10561845,10562837,10565034,10565790,10565971	0.875000
upper_lobe_of_left_lung_female_adult_53_years	chr6	144533101	144533113	144533101	+	RAMPAGE_only	5	6	20	0.986253	4.221928	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144329431	144605874	STRG.89166.3	+	144329431,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098	144331018,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144605874	0.950000
upper_lobe_of_left_lung_female_adult_53_years	chr17	2975660	2975665	2975660	+	RAMPAGE_only	8	8	17	0.838315	3.875000	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2981208	3026248	STRG.173208.1	+	2981208,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007	2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026248	0.764706
upper_lobe_of_left_lung_female_adult_53_years	chr6	2989611	2989636	2989613	+	High_confidence	2	3	8	0.394501	2.807355	chr6	2989586	2990082	LTR|ERV1|LTR73	-	chr6	2988647	2991173	LINC01011|ENST00000605901.1	+	2988647,2989527,2989868	2988709,2989733,2991173	0.625000
upper_lobe_of_left_lung_female_adult_53_years	chr11	34910295	34910326	34910295	+	High_confidence	8	10	28	1.380754	4.517559	chr11	34910254	34910518	LINE|L2|L2	-	chr11	34910367	34910744	STRG.131454.1	+	34910367	34910744	0.714286
upper_lobe_of_left_lung_female_adult_53_years	chr8	12565917	12565941	12565940	+	RAMPAGE_only	2	2	6	0.295876	2.584963	chr8	12565979	12567003	LTR|ERVK|LTR5A	+	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.833333
upper_lobe_of_left_lung_female_adult_53_years	chr15	45131763	45131768	45131763	+	RAMPAGE_only	2	3	7	0.345188	2.521641	chr15	45131641	45131769	LINE|L2|L2a	+	chr15	45130037	45164966	DUOX1|ENST00000561220.6	+	45130037,45131917,45133863,45134144,45135103,45135473,45135781,45136349,45136528,45137923,45139065,45140894,45141291,45141927,45143189,45144035,45144894,45147432,45147903,45148271,45150631,45151122,45151873,45152285,45153379,45153950,45155801,45160836,45161737,45162218,45163531,45163789,45164778	45130098,45132024,45133947,45134309,45135291,45135675,45135948,45136410,45136625,45138014,45139168,45141070,45141410,45142112,45143303,45144235,45145080,45147658,45147997,45148447,45150701,45151248,45152052,45152516,45153479,45154000,45155929,45160990,45161970,45162377,45163687,45163918,45164966	0.857143
upper_lobe_of_left_lung_female_adult_53_years	chr20	60031111	60031127	60031111	+	High_confidence	2	2	10	0.493126	3.169925	chr20	60030933	60031179	LTR|ERV1|MER41A	-	chr20	60030161	60032821	STRG.192202.7	+	60030161	60032821	0.600000
upper_lobe_of_left_lung_female_adult_53_years	chr4	8436023	8436026	8436025	-	RAMPAGE_only	10	15	18	0.887627	3.852169	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.611111
upper_lobe_of_left_lung_male_adult_37_years	chr1	51403428	51403448	51403432	-	RAMPAGE_only	7	7	22	1.287858	3.784942	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.909091
upper_lobe_of_left_lung_male_adult_37_years	chr17	7169028	7169094	7169070	+	High_confidence	24	32	106	6.205136	4.762170	chr17	7168879	7169774	LTR|ERVK|MER11D	+	chr17	7169041	7174095	STRG.68402.1	+	7169041,7173566	7169185,7174095	0.971698
upper_lobe_of_left_lung_male_adult_37_years	chr10	79611433	79611453	79611433	+	High_confidence	1	1	8	0.468312	3.000000	chr10	79611409	79611573	SINE|MIR|MIR3	-	chr10	79610960	79611898	SFTPA1|ENST00000486922.1	+	79610960,79611578	79610982,79611898	0.625000
upper_lobe_of_left_lung_male_adult_37_years	chr8	18063185	18063207	18063204	-	High_confidence	10	12	40	2.341561	4.701944	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.975000
upper_lobe_of_left_lung_male_adult_37_years	chr11	65181215	65181246	65181215	+	High_confidence	4	4	11	0.643929	3.277613	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr22	41940217	41940222	41940217	-	High_confidence	6	6	11	0.643929	3.121928	chr22	41939903	41940386	LINE|L2|L2a	+	chr22	41938720	41940219	CENPM|NM_001110215.2	-	41938720,41940138	41939196,41940219	0.818182
upper_lobe_of_left_lung_male_adult_37_years	chr11	17225036	17225068	17225067	+	RAMPAGE_only	47	47	74	4.331887	5.416249	chr11	17224821	17225165	LINE|L2|L2a	+	chr11	17260339	17349980	NUCB2|ENST00000646648.1	+	17260339,17269184,17276007,17282788,17295323,17296103,17301743,17309571,17310824,17311184,17311871,17312027,17315385,17330126,17330901,17337347,17349344	17260501,17269331,17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17337534,17349980	0.905405
upper_lobe_of_left_lung_male_adult_37_years	chr2	201790499	201790517	201790506	+	High_confidence	6	6	30	1.756170	4.351823	chr2	201790433	201790802	LINE|L2|L2-3_Crp	-	chr2	201790471	201807938	CDK15|ENST00000493754.5	+	201790471,201806428,201807493,201807852	201790660,201806547,201807643,201807938	0.533333
upper_lobe_of_left_lung_male_adult_37_years	chr14	23612344	23612365	23612362	+	RAMPAGE_only	5	5	13	0.761007	3.251629	chr14	23612270	23612982	LINE|L2|L2a	-	chr14	23619200	23620012	AL135999.3|ENST00000610501.1	+	23619200	23620012	0.615385
upper_lobe_of_left_lung_male_adult_37_years	chr19	45424444	45424479	45424478	-	High_confidence	2	2	9	0.526851	2.750000	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr8	57462956	57462990	57462984	+	High_confidence	4	4	11	0.643929	3.121928	chr8	57462811	57463216	LTR|ERV1|HERVE_a-int	+	chr8	57463213	57471645	STRG.39963.1	+	57463213	57471645	0.636364
upper_lobe_of_left_lung_male_adult_37_years	chr19	7549667	7549696	7549695	+	High_confidence	3	3	7	0.409773	2.521641	chr19	7549485	7549785	SINE|Alu|AluSz6	-	chr19	7549700	7551030	PNPLA6|ENST00000594864.1	+	7549700,7549906,7550297,7550516,7550993	7549766,7550112,7550429,7550640,7551030	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr11	67848662	67848702	67848695	-	High_confidence	39	48	266	15.571378	6.125248	chr11	67845654	67853485	LTR|ERV1|HERVE-int	-	chr11	67845310	67848727	STRG.51636.1	-	67845310,67848565	67847989,67848727	0.932331
upper_lobe_of_left_lung_male_adult_37_years	chr6	70394883	70394884	70394883	+	High_confidence	15	15	17	0.995163	3.454822	chr6	70394625	70395013	LTR|ERV1|MER48	+	chr6	70394886	70399417	AL365226.2|ENST00000418403.1	+	70394886,70395229,70399214	70395043,70395266,70399417	0.941176
upper_lobe_of_left_lung_male_adult_37_years	chr9	135444237	135444254	135444253	-	High_confidence	46	47	78	4.566043	5.749833	chr9	135444140	135444321	LTR|ERV1|LTR2C	-	chr9	135436612	135444392	STRG.45943.2	-	135436612	135444392	0.782051
upper_lobe_of_left_lung_male_adult_37_years	chr1	153967460	153967501	153967486	+	High_confidence	4	4	25	1.463475	3.643074	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.840000
upper_lobe_of_left_lung_male_adult_37_years	chr16	2757793	2757811	2757801	+	High_confidence	4	5	18	1.053702	3.572469	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.944444
upper_lobe_of_left_lung_male_adult_37_years	chr15	75347012	75347043	75347039	+	High_confidence	6	9	25	1.463475	3.762267	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75346989	75355251	NEIL1|NM_024608.3	+	75346989,75348883,75352110,75352323,75352601,75353738,75354249,75354430,75354652,75354963	75347473,75349339,75352230,75352387,75352701,75353866,75354277,75354492,75354818,75355251	0.840000
upper_lobe_of_left_lung_male_adult_37_years	chr5	140700445	140700452	140700445	+	High_confidence	563	742	1431	83.769332	4.870775	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.980433
upper_lobe_of_left_lung_male_adult_37_years	chr4	48805141	48805165	48805159	+	High_confidence	4	4	12	0.702468	2.732159	chr4	48805071	48805471	LTR|ERVL-MaLR|MLT1F	+	chr4	48805211	48850036	OCIAD1|ENST00000504654.5	+	48805211,48830576,48832619,48833400,48842635,48848398,48849946	48805330,48830673,48832682,48833481,48842689,48848446,48850036	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr16	2330060	2330070	2330060	-	High_confidence	4	5	9	0.526851	3.169925	chr16	2330011	2330308	SINE|Alu|AluSx	+	chr16	2323338	2329724	ABCA3|ENST00000567910.1	-	2323338,2324403,2326009,2326412,2328452,2329647	2323688,2324531,2326274,2326492,2328757,2329724	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr17	49646469	49646496	49646471	-	High_confidence	3	5	14	0.819546	3.180833	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.785714
upper_lobe_of_left_lung_male_adult_37_years	chr4	86453149	86453203	86453202	-	High_confidence	8	8	44	2.575717	4.151503	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr11	65639861	65639862	65639861	+	High_confidence	5	5	8	0.468312	2.500000	chr11	65639882	65640011	SINE|MIR|MIRc	+	chr11	65639865	65650880	SIPA1|ENST00000527525.5	+	65639865,65640830,65642249,65642462,65644954,65645853,65646220,65646455,65646969,65647383,65649261,65649560,65649756,65649949,65650137,65650400,65650568	65640021,65641600,65642377,65642639,65645129,65645957,65646378,65646663,65647065,65647658,65649480,65649672,65649865,65650051,65650192,65650479,65650880	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr1	113759898	113759899	113759898	-	High_confidence	8	8	12	0.702468	3.027169	chr1	113759674	113759907	LINE|L2|L2b	+	chr1	113697204	113759888	PHTF1|NM_001323042.1	-	113697204,113698261,113699703,113700793,113704080,113704665,113705889,113706593,113710253,113711745,113711939,113713278,113724758,113726417,113738109,113738729,113757698,113758658,113759771	113697725,113698387,113699799,113700949,113704167,113704797,113706162,113706722,113710475,113711835,113712113,113713438,113724893,113726574,113738268,113738799,113757755,113758733,113759888	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr1	175177662	175177669	175177662	-	RAMPAGE_only	7	7	12	0.702468	2.845351	chr1	175177563	175177679	SINE|MIR|MIRc	+	chr1	175156986	175166741	KIAA0040|ENST00000619513.1	-	175156986,175166561	175161146,175166741	0.916667
upper_lobe_of_left_lung_male_adult_37_years	chr12	111841288	111841289	111841288	-	High_confidence	7	7	7	0.409773	2.807355	chr12	111841073	111841497	LINE|L2|L2b	+	chr12	111839766	111841902	MAPKAPK5-AS1|ENST00000443596.1	-	111839766,111841683	111840477,111841902	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr19	35899347	35899371	35899370	+	RAMPAGE_only	14	14	27	1.580553	3.676391	chr19	35899297	35899582	SINE|Alu|AluSx1	+	chr19	35902479	35904271	HCST|NM_014266.3	+	35902479,35903350,35903771,35904119	35902636,35903416,35903903,35904271	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr12	56157308	56157349	56157348	+	High_confidence	3	3	16	0.936624	3.106891	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr4	2867776	2867851	2867814	+	High_confidence	23	24	88	5.151433	5.375576	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	0.965909
upper_lobe_of_left_lung_male_adult_37_years	chr2	37973820	37973869	37973868	+	RAMPAGE_only	3	3	20	1.170780	3.984184	chr2	37973395	37973996	LINE|L2|L2a	-	chr2	37950463	38004187	RMDN2|ENST00000442857.5	+	37950463,37974039,37975211,37981282,37989540,37991219,37997415,38003990,38004135	37950595,37974214,37975314,37981343,37989616,37991297,37997514,38004044,38004187	0.950000
upper_lobe_of_left_lung_male_adult_37_years	chr6	77369144	77369167	77369166	-	High_confidence	5	8	19	1.112241	4.058814	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77350521	77369152	STRG.31151.1	-	77350521,77368885	77350734,77369152	0.526316
upper_lobe_of_left_lung_male_adult_37_years	chr17	59892715	59892729	59892719	-	High_confidence	2	3	10	0.585390	3.169925	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.800000
upper_lobe_of_left_lung_male_adult_37_years	chr11	3477038	3477073	3477055	-	High_confidence	127	134	650	38.050360	5.940054	chr11	3474025	3479237	LTR|ERV1|HERVE-int	-	chr11	3473570	3477071	STRG.49924.1	-	3473570,3476942	3476373,3477071	0.961538
upper_lobe_of_left_lung_male_adult_37_years	chr10	93431409	93431495	93431448	-	RAMPAGE_only	4	4	26	1.522014	4.103465	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.961538
upper_lobe_of_left_lung_male_adult_37_years	chr22	32059155	32059191	32059169	+	High_confidence	55	56	203	11.883420	5.157764	chr22	32059153	32059234	SINE|Alu|AluSz6	+	chr22	32059169	32113029	SLC5A1|NM_001256314.1	+	32059169,32066934,32067966,32068495,32081865,32083073,32084438,32084899,32086219,32091611,32099182,32102021,32104785,32109989	32059344,32067039,32068026,32068600,32081971,32083154,32084659,32085035,32086327,32091762,32099351,32102237,32104891,32113029	0.950739
upper_lobe_of_left_lung_male_adult_37_years	chr17	67920092	67920093	67920092	+	High_confidence	7	7	10	0.585390	2.947703	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	0.900000
upper_lobe_of_left_lung_male_adult_37_years	chr19	50372863	50372886	50372863	+	RAMPAGE_only	9	9	21	1.229319	3.630413	chr19	50372845	50372986	SINE|Alu|AluSc	-	chr19	50376422	50383028	NR1H2|NM_007121.5	+	50376422,50376718,50377586,50377732,50378148,50378521,50379001,50379779,50381965,50382455	50376576,50376826,50377648,50377870,50378439,50378796,50379181,50379879,50382174,50383028	0.952381
upper_lobe_of_left_lung_male_adult_37_years	chr15	66708548	66708577	66708576	+	RAMPAGE_only	4	4	12	0.702468	3.084963	chr15	66708470	66708943	LINE|L1|L1MB7	+	chr15	66711675	66781313	SMAD6|ENST00000559931.5	+	66711675,66716420,66717011,66780996	66711724,66716498,66717140,66781313	0.666667
upper_lobe_of_left_lung_male_adult_37_years	chr8	56559496	56559497	56559496	-	High_confidence	156	157	184	10.771179	6.669581	chr8	56559312	56559530	SINE|MIR|MIR	-	chr8	56494906	56559497	STRG.39955.3	-	56494906,56520120,56559452	56496333,56520567,56559497	0.619565
upper_lobe_of_left_lung_male_adult_37_years	chr2	29114286	29114307	29114286	+	High_confidence	3	3	6	0.351234	2.584963	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.666667
upper_lobe_of_left_lung_male_adult_37_years	chr19	12800944	12800954	12800944	-	High_confidence	5	5	11	0.643929	2.646439	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.909091
upper_lobe_of_left_lung_male_adult_37_years	chr4	56657791	56657794	56657793	-	RAMPAGE_only	5	9	11	0.643929	2.913977	chr4	56657736	56657851	SINE|MIR|MIR3	-	chr4	56647997	56656525	HOPX|ENST00000556614.6	-	56647997,56655856,56656343	56648797,56656012,56656525	0.636364
upper_lobe_of_left_lung_male_adult_37_years	chr9	136523980	136524123	136524122	-	High_confidence	18	19	103	6.029519	5.039820	chr9	136524112	136524200	LINE|L1|L1MB5	+	chr9	136522627	136523898	NOTCH1|ENST00000491649.1	-	136522627,136523716	136523188,136523898	0.902913
upper_lobe_of_left_lung_male_adult_37_years	chr9	122406522	122406553	122406533	+	RAMPAGE_only	5	6	23	1.346397	3.240528	chr9	122405232	122406719	LTR|ERV1|LTR12C	-	chr9	122403406	122448977	AL359636.1|ENST00000433572.2	+	122403406,122404671,122415713,122416767,122447428,122448929	122403456,122404791,122415782,122416885,122447545,122448977	0.739130
upper_lobe_of_left_lung_male_adult_37_years	chr2	100192419	100192420	100192419	-	RAMPAGE_only	272	274	376	22.010670	7.434152	chr2	100192079	100192499	LTR|ERVL-MaLR|MLT1L	-	chr2	100007336	100142575	STRG.10063.6	-	100007336,100008811,100011496,100104401,100105503,100112385,100129223,100142483	100007460,100008932,100011571,100104518,100105583,100112524,100129306,100142575	0.531915
upper_lobe_of_left_lung_male_adult_37_years	chr6	127330835	127330945	127330835	-	High_confidence	5	5	47	2.751334	4.697846	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.872340
upper_lobe_of_left_lung_male_adult_37_years	chr17	28234014	28234048	28234014	-	RAMPAGE_only	8	9	50	2.926951	4.995026	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.980000
upper_lobe_of_left_lung_male_adult_37_years	chr16	10531549	10531575	10531567	-	RAMPAGE_only	3	3	11	0.643929	2.921928	chr16	10531325	10531629	SINE|Alu|AluSx	-	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.909091
upper_lobe_of_left_lung_male_adult_37_years	chr9	72363549	72363574	72363573	-	High_confidence	4	4	12	0.702468	3.459432	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.666667
upper_lobe_of_left_lung_male_adult_37_years	chr7	150323668	150323751	150323750	-	High_confidence	8	8	30	1.756170	3.999581	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150286467	150323725	ACTR3C|ENST00000477871.1	-	150286467,150289449,150293311,150295251,150323468	150286540,150289593,150293419,150295347,150323725	0.966667
upper_lobe_of_left_lung_male_adult_37_years	chr18	7946930	7946946	7946930	+	High_confidence	5	5	9	0.526851	2.641604	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.777778
upper_lobe_of_left_lung_male_adult_37_years	chr21	45004554	45004585	45004554	-	High_confidence	18	18	114	6.673448	5.591416	chr21	45004415	45004509	LINE|L1|L1MB7	-	chr21	44999207	45004727	PICSAR|ENST00000615826.1	-	44999207,45004443	44999656,45004727	0.868421
upper_lobe_of_left_lung_male_adult_37_years	chr19	17197856	17197857	17197856	+	High_confidence	8	8	12	0.702468	3.418296	chr19	17197865	17198075	SINE|Alu|AluSz6	+	chr19	17198117	17206828	MYO9B|ENST00000593533.1	+	17198117,17200292,17200638,17201925,17202129,17202844,17206678	17198308,17200426,17200829,17202024,17202303,17202883,17206828	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr16	760794	760821	760819	+	High_confidence	13	26	39	2.283022	4.477459	chr16	760734	760840	SINE|MIR|MIRc	-	chr16	760766	768865	MSLN|ENST00000566549.5	+	760766,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766667,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr2	37973926	37974001	37973939	+	RAMPAGE_only	9	9	45	2.634256	4.845351	chr2	37973395	37973996	LINE|L2|L2a	-	chr2	37950463	38004187	RMDN2|ENST00000442857.5	+	37950463,37974039,37975211,37981282,37989540,37991219,37997415,38003990,38004135	37950595,37974214,37975314,37981343,37989616,37991297,37997514,38004044,38004187	0.866667
upper_lobe_of_left_lung_male_adult_37_years	chr7	17374741	17374744	17374741	+	High_confidence	9	13	25	1.463475	4.053509	chr7	17374638	17374768	DNA|hAT-Charlie|MER5B	+	chr7	17374866	17466664	KCCAT333|ENST00000419463.1	+	17374866,17448880,17450994,17466151	17375055,17448948,17451061,17466664	0.720000
upper_lobe_of_left_lung_male_adult_37_years	chr9	123179187	123179221	123179187	-	RAMPAGE_only	7	7	12	0.702468	3.251629	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.916667
upper_lobe_of_left_lung_male_adult_37_years	chr7	6953938	6953962	6953961	-	High_confidence	7	7	31	1.814709	4.615061	chr7	6950904	6958745	LTR|ERV1|HERVE-int	-	chr7	6950463	6953942	STRG.34245.1	-	6950463,6953825	6953249,6953942	0.870968
upper_lobe_of_left_lung_male_adult_37_years	chr19	34860633	34860654	34860643	-	High_confidence	6	7	23	1.346397	3.689704	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.565217
upper_lobe_of_left_lung_male_adult_37_years	chr17	75532447	75532455	75532447	+	High_confidence	4	4	9	0.526851	2.750000	chr17	75532417	75532724	SINE|Alu|AluSx	-	chr17	75532492	75574906	LLGL2|ENST00000577200.5	+	75532492,75543396,75556045,75558154,75558511,75559251,75563015,75563330,75563751,75564352,75568475,75568771,75568977,75569220,75569962,75570347,75570949,75571666,75571897,75573013,75573480,75573951,75574212,75574452,75574609,75574873	75532566,75543501,75556143,75558236,75558627,75559410,75563178,75563463,75563806,75564507,75568693,75568839,75569131,75569325,75570255,75570498,75571100,75571783,75572064,75573278,75573631,75573980,75574260,75574495,75574668,75574906	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr20	45833293	45833321	45833293	-	High_confidence	3	3	14	0.819546	3.093069	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr2	187513638	187513653	187513652	-	High_confidence	44	48	127	7.434455	5.107730	chr2	187510951	187515862	LTR|ERV1|Harlequin-int	+	chr2	187467874	187513653	TFPI|ENST00000435414.5	-	187467874,187484123,187484810,187496880,187503647,187513615	187467932,187484216,187484987,187497078,187503770,187513653	0.929134
upper_lobe_of_left_lung_male_adult_37_years	chr15	57402037	57402038	57402037	+	RAMPAGE_only	20	20	20	1.170780	3.821928	chr15	57402062	57402472	LTR|ERVL-MaLR|MSTB	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr3	33838239	33838326	33838256	+	RAMPAGE_only	14	14	41	2.400100	4.656213	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.756098
upper_lobe_of_left_lung_male_adult_37_years	chr15	45160485	45160510	45160509	+	RAMPAGE_only	21	21	41	2.400100	4.373051	chr15	45160430	45160675	LINE|L2|L2a	-	chr15	45147954	45165573	STRG.63494.6	+	45147954,45148271,45150631,45151134,45151873,45152285,45153379,45153950,45155801,45160836,45161737,45162218,45163531,45163789,45164778	45147997,45148447,45150701,45151248,45152052,45152516,45153479,45154000,45155929,45160990,45161970,45162377,45163687,45163918,45165573	0.951220
upper_lobe_of_left_lung_male_adult_37_years	chr11	123061212	123061328	123061256	-	High_confidence	49	49	294	17.210471	5.729054	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.955782
upper_lobe_of_left_lung_male_adult_37_years	chr15	57516588	57516610	57516588	+	RAMPAGE_only	9	9	25	1.463475	4.136842	chr15	57516424	57516656	DNA|hAT-Charlie|MER58A	-	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.960000
upper_lobe_of_left_lung_male_adult_37_years	chr3	69237176	69237183	69237182	-	RAMPAGE_only	6	6	17	0.995163	3.169249	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.823529
upper_lobe_of_left_lung_male_adult_37_years	chr20	34369392	34369439	34369392	+	RAMPAGE_only	2	2	10	0.585390	3.121928	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr6	111387800	111387801	111387800	-	RAMPAGE_only	6	7	9	0.526851	2.750000	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.777778
upper_lobe_of_left_lung_male_adult_37_years	chr15	45631147	45631148	45631147	+	High_confidence	75	77	87	5.092894	5.012666	chr15	45630952	45631306	LTR|ERVL-MaLR|THE1A	+	chr15	45631147	45691280	SQOR|ENST00000568606.5	+	45631147,45631926,45658906,45661954,45669927,45673606,45676100,45682477,45688336,45689038,45690972	45631230,45632015,45659157,45662125,45669981,45673801,45676310,45682661,45688404,45689217,45691280	0.942529
upper_lobe_of_left_lung_male_adult_37_years	chr6	109325735	109325743	109325735	+	RAMPAGE_only	2	2	8	0.468312	2.807355	chr6	109324446	109326053	LINE|L2|L2a	-	chr6	109294308	109355046	CCDC162P|ENST00000638844.1	+	109294308,109295526,109300230,109305958,109307981,109309501,109314062,109315279,109316847,109329002,109336367,109337395,109338447,109340901,109341301,109342398,109343986,109348426,109352786,109354847	109294458,109295692,109300369,109306112,109308077,109309654,109314292,109315418,109316968,109329112,109336517,109337449,109338615,109341054,109341433,109342551,109344196,109348547,109352914,109355046	0.875000
upper_lobe_of_left_lung_male_adult_37_years	chr5	172093414	172093442	172093414	-	RAMPAGE_only	2	3	9	0.526851	2.725481	chr5	172093338	172093392	DNA|hAT-Ac|OldhAT1	-	chr5	172042069	172188342	STK10|NM_005990.3	-	172042069,172052928,172054568,172055587,172057348,172061138,172064719,172082325,172082960,172090231,172093411,172096425,172105655,172106619,172107779,172117480,172127372,172156623,172187886	172045022,172053042,172054694,172055776,172057473,172061268,172064812,172082505,172083084,172090362,172093960,172096560,172105737,172106814,172107852,172117630,172127421,172156788,172188342	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr5	180909572	180909577	180909572	+	High_confidence	26	28	39	2.283022	4.662015	chr5	180909597	180909731	SINE|Alu|FLAM_C	+	chr5	180909572	180948353	BTNL8|ENST00000514448.5	+	180909572,180911338,180947511	180909697,180911614,180948353	0.717949
upper_lobe_of_left_lung_male_adult_37_years	chr19	45424375	45424396	45424384	-	High_confidence	7	10	23	1.346397	3.936180	chr19	45424216	45424524	LINE|L2|L2b	-	chr19	45409667	45424367	ERCC1|ENST00000589165.5	-	45409667,45413676,45413962,45414860,45416820,45419097,45420323,45421177,45423269,45423822	45409725,45413745,45414034,45414960,45416897,45419197,45420427,45421393,45423381,45424367	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr13	113187270	113187344	113187336	-	High_confidence	8	8	35	2.048866	4.741364	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.800000
upper_lobe_of_left_lung_male_adult_37_years	chr3	15341379	15341380	15341379	-	High_confidence	180	193	207	12.117576	6.548947	chr3	15341159	15341407	LINE|L2|L2a	+	chr3	15255649	15341368	SH3BP5|ENST00000408919.7	-	15255649,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341368	0.739130
upper_lobe_of_left_lung_male_adult_37_years	chr20	45361938	45361969	45361968	+	High_confidence	4	6	20	1.170780	3.646439	chr20	45361814	45361969	SINE|MIR|MIR3	-	chr20	45361950	45367225	SYS1|ENST00000414310.5	+	45361950,45363168,45363543,45365618,45366874	45362029,45363315,45363693,45365686,45367225	0.800000
upper_lobe_of_left_lung_male_adult_37_years	chr3	93997077	93997106	93997105	+	RAMPAGE_only	2	2	6	0.351234	2.584963	chr3	93996782	93997287	DNA|hAT-Charlie|MER1A	+	chr3	93980287	94003908	ARL13B|ENST00000492165.2	+	93980287,94003658	93980482,94003908	0.666667
upper_lobe_of_left_lung_male_adult_37_years	chr15	49466529	49466542	49466529	+	RAMPAGE_only	2	2	7	0.409773	2.521641	chr15	49466435	49466744	LINE|L2|L2c	-	chr15	49434395	49484520	FGF7|ENST00000560704.1	+	49434395,49483150,49484309	49434653,49483254,49484520	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chrX	7147265	7147288	7147287	+	High_confidence	20	20	36	2.107405	4.537845	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147265	7354634	STRG.79739.2	+	7147265,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7148083,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354634	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr14	101823645	101823653	101823652	+	High_confidence	5	5	9	0.526851	2.750000	chr14	101823598	101823757	SINE|MIR|MIRc	-	chr14	101824161	101824478	PPP2R5C|ENST00000607042.1	+	101824161	101824478	0.555556
upper_lobe_of_left_lung_male_adult_37_years	chr19	10825189	10825216	10825211	+	RAMPAGE_only	4	4	15	0.878085	3.324863	chr19	10825253	10825388	SINE|Alu|AluSx1	+	chr19	10823223	10833484	DNM2|ENST00000593203.1	+	10823223,10825056,10829035,10830126,10832303	10823899,10825221,10829268,10830378,10833484	0.800000
upper_lobe_of_left_lung_male_adult_37_years	chr1	26554708	26554735	26554734	+	RAMPAGE_only	4	4	10	0.585390	2.725481	chr1	26554776	26554842	SINE|MIR|MIR3	+	chr1	26557042	26571508	RPS6KA1|ENST00000403732.2	+	26557042,26558806,26561044,26561504,26571448	26557100,26558937,26561134,26561663,26571508	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr5	140593654	140593655	140593654	-	RAMPAGE_only	8	8	8	0.468312	2.500000	chr5	140593229	140593744	LINE|L1|L1P1	-	chr5	140575047	140592115	STRG.27513.1	-	140575047,140590874,140592023	140575576,140590991,140592115	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr3	193614799	193614824	193614823	+	High_confidence	7	8	13	0.761007	2.661226	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr2	3536845	3536873	3536857	-	High_confidence	3	3	18	1.053702	3.947703	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3533223	3536869	AC108488.1|ENST00000438482.1	-	3533223,3534112,3536723	3533848,3534255,3536869	0.555556
upper_lobe_of_left_lung_male_adult_37_years	chr22	49657348	49657356	49657348	-	High_confidence	4	4	12	0.702468	3.095795	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.583333
upper_lobe_of_left_lung_male_adult_37_years	chr6	2990740	2990749	2990740	-	RAMPAGE_only	5	5	23	1.346397	3.299896	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.869565
upper_lobe_of_left_lung_male_adult_37_years	chr12	4012936	4012953	4012947	+	High_confidence	8	8	23	1.346397	4.106603	chr12	4012703	4012997	SINE|Alu|AluJb	+	chr12	4012962	4019186	STRG.53600.1	+	4012962,4013691,4018981	4013114,4013786,4019186	0.826087
upper_lobe_of_left_lung_male_adult_37_years	chr6	137218709	137218726	137218725	-	High_confidence	8	8	13	0.761007	3.238901	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr14	103931752	103931758	103931757	+	RAMPAGE_only	8	9	16	0.936624	3.500000	chr14	103931646	103932201	LTR|ERVL-MaLR|MLT1E2	+	chr14	103928479	104052667	TDRD9|NM_153046.2	+	103928479,103955663,103963078,103965332,103966708,103970540,103975388,103986216,103991159,103994331,103994518,103995749,103998623,104004237,104005273,104006388,104006645,104006781,104007159,104008412,104014724,104015980,104018091,104022156,104024568,104025563,104026046,104026678,104031107,104032016,104033959,104034959,104040195,104042068,104049607,104051980	103928724,103955770,103963176,103965554,103966831,103970621,103975553,103986320,103991224,103994386,103994603,103995807,103998728,104004335,104005405,104006554,104006709,104006845,104007204,104008466,104014841,104016088,104018192,104022330,104024680,104025776,104026136,104026939,104031263,104032087,104034069,104035056,104040334,104042187,104049680,104052667	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr6	137218805	137218822	137218821	-	High_confidence	6	7	11	0.643929	2.646439	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.818182
upper_lobe_of_left_lung_male_adult_37_years	chr4	158173024	158173025	158173024	-	High_confidence	13	13	17	0.995163	3.452820	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.823529
upper_lobe_of_left_lung_male_adult_37_years	chr11	65429258	65429309	65429305	+	RAMPAGE_only	7	7	31	1.814709	4.189898	chr11	65428987	65429477	LINE|L1|L1ME4a	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.967742
upper_lobe_of_left_lung_male_adult_37_years	chr20	50267474	50267500	50267477	+	High_confidence	110	153	401	23.474145	6.271128	chr20	50267380	50267534	SINE|MIR|MIRb	-	chr20	50267485	50279795	LINC01272|NM_001278655.1	+	50267485,50275645,50277490,50278176	50267663,50275735,50277613,50279795	0.970075
upper_lobe_of_left_lung_male_adult_37_years	chr15	41278793	41278887	41278886	+	RAMPAGE_only	11	11	51	2.985490	4.922138	chr15	41278930	41279226	SINE|Alu|AluSg	+	chr15	41231238	41281887	CHP1|NM_007236.4	+	41231238,41243666,41256909,41262755,41270556,41278766,41279335	41231449,41243739,41256990,41262883,41270618,41278889,41281887	0.980392
upper_lobe_of_left_lung_male_adult_37_years	chr1	112459064	112459065	112459064	+	RAMPAGE_only	14	14	15	0.878085	3.521641	chr1	112458861	112459174	DNA|hAT-Charlie|MER102b	-	chr1	112411431	112468065	STRG.3808.3	+	112411431,112412193,112416156,112448941,112454448,112455930	112411855,112412317,112416264,112449172,112454556,112468065	0.933333
upper_lobe_of_left_lung_male_adult_37_years	chr1	234980771	234980790	234980771	-	High_confidence	2	3	9	0.526851	2.725481	chr1	234980615	234980877	SINE|5S-Deu-L2|AmnSINE1	-	chr1	234979695	234980742	STRG.6995.1	-	234979695	234980742	0.666667
upper_lobe_of_left_lung_male_adult_37_years	chr10	86974592	86974670	86974613	-	High_confidence	6	8	43	2.517178	4.707677	chr10	86974596	86974877	LINE|L1|L1M7	-	chr10	86972907	86973965	STRG.48242.1	-	86972907	86973965	0.837209
upper_lobe_of_left_lung_male_adult_37_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	11	11	14	0.819546	3.521641	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155339379	STRG.4695.27	-	155336054,155339327	155338390,155339379	0.928571
upper_lobe_of_left_lung_male_adult_37_years	chr3	101692171	101692186	101692171	+	RAMPAGE_only	7	8	14	0.819546	3.238901	chr3	101691892	101692861	LTR|ERVK|LTR5_Hs	+	chr3	101688441	101700959	STRG.16876.4	+	101688441	101700959	0.928571
upper_lobe_of_left_lung_male_adult_37_years	chr19	45524139	45524140	45524139	+	RAMPAGE_only	7	9	11	0.643929	3.027169	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.727273
upper_lobe_of_left_lung_male_adult_37_years	chr8	16186276	16186284	16186276	-	High_confidence	2	2	6	0.351234	2.584963	chr8	16186226	16186633	LINE|L2|L2	+	chr8	16110045	16186272	MSR1|ENST00000445506.6	-	16110045,16120417,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16186158	16110218,16120606,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16186272	0.833333
upper_lobe_of_left_lung_male_adult_37_years	chr11	65382645	65382646	65382645	-	High_confidence	4	4	7	0.409773	2.584963	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65379452	65382645	SLC25A45|ENST00000529962.5	-	65379452,65379866,65380131,65380533,65381874,65382485	65379561,65379938,65380175,65380622,65381969,65382645	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr3	125497354	125497374	125497354	-	RAMPAGE_only	4	5	11	0.643929	2.913977	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr9	127762413	127762457	127762413	-	High_confidence	3	3	8	0.468312	2.750000	chr9	127762302	127762854	LINE|L2|L2a	+	chr9	127744897	127762416	SH2D3C|ENST00000440630.5	-	127744897,127747146,127749210,127751171,127761610,127762391	127745099,127747271,127749665,127751300,127761650,127762416	0.875000
upper_lobe_of_left_lung_male_adult_37_years	chr19	44914313	44914396	44914321	+	High_confidence	73	75	134	7.844228	5.555934	chr19	44913971	44914427	LTR|ERV1|LTR2	+	chr19	44914324	44919346	APOC1|ENST00000588802.5	+	44914324,44914871,44916189,44919172	44914489,44914949,44916325,44919346	0.880597
upper_lobe_of_left_lung_male_adult_37_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	10	10	15	0.878085	3.521641	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.600000
upper_lobe_of_left_lung_male_adult_37_years	chr3	9192492	9192539	9192492	+	High_confidence	23	25	39	2.283022	4.631305	chr3	9192123	9192754	LTR|ERVL|MER77	+	chr3	9192492	9194453	LOC101927416|NR_121663.1	+	9192492,9193428,9193725	9192995,9193490,9194453	0.974359
upper_lobe_of_left_lung_male_adult_37_years	chr1	160934340	160934353	160934352	-	High_confidence	15	18	30	1.756170	3.935399	chr1	160934189	160934403	LTR|ERVL|ERVL-E-int	+	chr1	160931738	160934380	AL354714.3|ENST00000427339.1	-	160931738,160934244	160932177,160934380	0.933333
upper_lobe_of_left_lung_male_adult_37_years	chr17	75498257	75498258	75498257	+	RAMPAGE_only	4	4	7	0.409773	2.584963	chr17	75498201	75498275	LINE|L2|L2-1_Crp	+	chr17	75495541	75500082	TMEM94|ENST00000579898.5	+	75495541,75496729,75497112,75497780,75498174,75498443,75498911,75499261	75496471,75496807,75497198,75497862,75498323,75498722,75499082,75500082	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr7	45940646	45940654	45940646	+	RAMPAGE_only	3	3	6	0.351234	2.584963	chr7	45940124	45940877	LTR|ERV1|LTR12	+	chr7	45969656	45980191	AC073115.2|ENST00000416708.1	+	45969656,45978349,45979908	45969809,45978468,45980191	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr16	2276287	2276613	2276299	-	RAMPAGE_only	55	56	478	27.981650	6.288597	chr16	2276241	2276330	LINE|CR1|CR1_Mam	-	chr16	2275880	2340735	ABCA3|ENST00000301732.9	-	2275880,2277596,2277878,2278287,2278942,2281026,2281380,2283185,2284278,2284778,2285441,2286693,2288025,2289433,2292139,2295589,2297328,2297765,2298385,2299402,2300004,2303968,2308449,2317282,2317647,2319580,2323522,2324403,2326009,2326412,2328452,2329647,2340572	2276805,2277670,2278069,2278458,2279130,2281221,2281509,2283358,2284437,2284998,2285646,2286967,2288329,2289620,2292238,2295740,2297539,2297921,2298540,2299532,2300148,2304150,2308623,2317403,2317764,2319840,2323688,2324531,2326274,2326492,2328757,2329854,2340735	0.989540
upper_lobe_of_left_lung_male_adult_37_years	chr16	19430443	19430449	19430448	+	RAMPAGE_only	3	3	7	0.409773	2.584963	chr16	19430397	19430533	LINE|RTE-X|L4_B_Mam	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr18	54240113	54240116	54240115	-	RAMPAGE_only	6	11	14	0.819546	2.873141	chr18	54240039	54240347	SINE|Alu|AluSc8	-	chr18	54151600	54224788	MBD2|ENST00000256429.7	-	54151600,54159764,54164522,54166075,54188873,54204997,54224017	54155311,54159903,54164700,54166166,54189011,54205157,54224788	0.785714
upper_lobe_of_left_lung_male_adult_37_years	chr3	11225838	11225886	11225885	-	High_confidence	11	12	27	1.580553	4.483856	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.555556
upper_lobe_of_left_lung_male_adult_37_years	chr12	79542295	79542296	79542295	+	High_confidence	4	4	7	0.409773	2.584963	chr12	79540300	79543266	LTR|ERV1|HERVH-int	+	chr12	79542205	79550346	AC027288.1|ENST00000551032.5	+	79542205,79546065,79550108	79542410,79546176,79550346	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chrX	48683361	48683363	48683362	+	High_confidence	34	61	61	3.570880	4.741241	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.934426
upper_lobe_of_left_lung_male_adult_37_years	chr3	134485443	134485490	134485455	-	High_confidence	7	7	48	2.809873	4.292176	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.604167
upper_lobe_of_left_lung_male_adult_37_years	chr11	35073983	35073984	35073983	-	RAMPAGE_only	12	16	16	0.936624	3.452820	chr11	35073798	35074175	LTR|ERVL-MaLR|THE1D	-	chr11	35051314	35052287	STRG.50744.1	-	35051314,35052174	35051712,35052287	0.625000
upper_lobe_of_left_lung_male_adult_37_years	chr17	59729704	59729705	59729704	+	High_confidence	5	7	7	0.409773	2.521641	chr17	59729673	59729983	SINE|Alu|AluSq2	-	chr17	59729714	59737517	VMP1|ENST00000587259.5	+	59729714,59731420,59735337,59737452	59730017,59731522,59735473,59737517	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr2	233357052	233357088	233357052	+	RAMPAGE_only	2	2	15	0.878085	3.106891	chr2	233356905	233357200	LTR|ERVL|LTR33A_	-	chr2	233354571	233459867	STRG.13559.3	+	233354571,233388256,233390402,233434379,233434768,233435817,233436315,233437376,233438216,233441886,233445622,233446711,233448086,233448275,233449102,233449981,233450921,233451963,233454762,233456898,233457220,233458283,233459756	233354674,233388367,233390483,233434484,233434901,233435924,233436441,233437479,233438379,233441995,233445762,233446796,233448181,233448375,233449376,233450131,233451050,233452060,233454873,233456995,233457328,233458397,233459867	0.800000
upper_lobe_of_left_lung_male_adult_37_years	chr1	223759086	223759087	223759086	+	High_confidence	8	8	8	0.468312	2.750000	chr1	223759082	223759137	SINE|Alu|AluJr	-	chr1	223758225	223776018	CAPN2|ENST00000487223.5	+	223758225,223761580,223762185,223764149,223766366,223769840,223770446,223771808,223772180,223774833	223759481,223761617,223762251,223764207,223766431,223769909,223770525,223771925,223772239,223776018	0.625000
upper_lobe_of_left_lung_male_adult_37_years	chr6	35543643	35543649	35543648	+	High_confidence	45	89	168	9.834555	6.223947	chr6	35543503	35543668	DNA|hAT-Charlie|MER5B	+	chr6	35543634	35546626	STRG.30164.1	+	35543634,35544867,35545214	35543758,35544933,35546626	0.702381
upper_lobe_of_left_lung_male_adult_37_years	chr2	178323536	178323570	178323569	+	High_confidence	5	8	13	0.761007	3.334679	chr2	178323457	178323762	SINE|Alu|AluSq	-	chr2	178323569	178332701	OSBPL6|ENST00000477097.1	+	178323569,178324176,178328255,178331551,178332640	178323780,178324269,178328378,178331605,178332701	0.846154
upper_lobe_of_left_lung_male_adult_37_years	chr8	143020947	143020978	143020977	+	RAMPAGE_only	6	6	14	0.819546	3.334679	chr8	143021012	143021252	LINE|L2|L2b	+	chr8	143018556	143021892	LY6E|ENST00000522024.1	+	143018556,143018832,143020887,143021313,143021565	143018586,143019119,143020991,143021433,143021892	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr3	139344535	139344548	139344547	+	High_confidence	61	61	145	8.488157	5.343416	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.917241
upper_lobe_of_left_lung_male_adult_37_years	chr2	87469947	87469950	87469949	+	RAMPAGE_only	12	15	19	1.112241	3.787144	chr2	87469754	87470169	LTR|ERVL-MaLR|MLT1C	+	chr2	87455844	87521504	CYTOR|ENST00000645138.1	+	87455844,87480222,87521206	87455973,87480423,87521504	0.526316
upper_lobe_of_left_lung_male_adult_37_years	chr10	34405848	34405849	34405848	-	RAMPAGE_only	4	4	7	0.409773	2.584963	chr10	34405665	34405965	LTR|ERVL|LTR40b	-	chr10	34312263	34426731	PARD3|ENST00000544292.5	-	34312263,34317106,34331116,34336198,34337277,34341626,34347964,34359146,34360070,34374873,34377966,34382539,34384128,34399329,34401825,34426684	34312382,34317338,34331344,34336243,34337426,34341816,34348115,34359317,34360259,34375002,34378106,34382922,34384254,34399413,34401917,34426731	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr2	36513735	36513757	36513756	+	High_confidence	9	9	21	1.229319	3.327340	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.904762
upper_lobe_of_left_lung_male_adult_37_years	chr10	17216310	17216311	17216310	-	RAMPAGE_only	19	19	26	1.522014	3.813661	chr10	17216274	17216354	LTR|ERV1|HERVIP10FH-int	+	chr10	17214238	17226898	VIM-AS1|ENST00000437232.5	-	17214238,17216166,17217601,17226855	17215364,17216274,17217675,17226898	0.576923
upper_lobe_of_left_lung_male_adult_37_years	chr8	143281669	143281687	143281669	-	High_confidence	16	16	51	2.985490	4.946552	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281250	MINCR|ENST00000519852.5	-	143280827,143281092	143280997,143281250	0.568627
upper_lobe_of_left_lung_male_adult_37_years	chr19	20247570	20247586	20247570	+	RAMPAGE_only	5	5	12	0.702468	2.688722	chr19	20246144	20248488	LTR|ERV1|HERVE_a-int	+	chr19	20249051	20250295	AC078899.3|ENST00000599065.1	+	20249051,20250216	20249184,20250295	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr5	173642505	173642534	173642533	+	High_confidence	9	9	19	1.112241	3.461320	chr5	173642505	173642642	LTR|ERVL-MaLR|MLT1K	+	chr5	173642518	173658194	LINC01863|ENST00000523242.1	+	173642518,173657839	173642657,173658194	0.526316
upper_lobe_of_left_lung_male_adult_37_years	chr3	151539248	151539292	151539265	-	RAMPAGE_only	6	6	25	1.463475	4.220176	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.640000
upper_lobe_of_left_lung_male_adult_37_years	chr10	103890267	103890286	103890285	-	RAMPAGE_only	29	29	53	3.102568	4.825252	chr10	103890251	103890349	SINE|MIR|MIRc	+	chr10	103882554	103892527	STRG.49056.7	-	103882554,103889071,103892296	103882841,103889144,103892527	0.962264
upper_lobe_of_left_lung_male_adult_37_years	chr5	109383420	109383498	109383454	-	High_confidence	4	4	30	1.756170	4.185230	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.933333
upper_lobe_of_left_lung_male_adult_37_years	chr8	32927967	32927984	32927976	+	High_confidence	63	65	129	7.551533	5.819420	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32927980	33044802	STRG.39626.1	+	32927980,32996200,33041634,33044366	32928093,32996316,33041771,33044802	0.736434
upper_lobe_of_left_lung_male_adult_37_years	chr17	2667167	2667196	2667195	+	High_confidence	14	14	25	1.463475	4.243856	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr1	227142956	227142957	227142956	-	RAMPAGE_only	11	11	13	0.761007	2.751629	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.692308
upper_lobe_of_left_lung_male_adult_37_years	chr2	8783160	8783166	8783160	-	RAMPAGE_only	4	4	10	0.585390	2.846439	chr2	8782911	8783214	SINE|Alu|AluSq	+	chr2	8725559	8802971	KIDINS220|ENST00000496383.5	-	8725559,8726886,8733443,8734654,8736867,8750111,8751465,8770669,8776747,8778638,8778895,8779673,8785740,8786205,8788646,8789879,8791059,8793809,8796770,8798201,8800399,8802929	8725599,8726943,8733680,8734753,8736999,8750335,8751644,8770832,8776892,8778727,8779139,8779814,8786030,8786357,8788812,8790059,8791224,8793987,8796869,8798300,8800498,8802971	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr10	103918675	103918692	103918675	-	High_confidence	4	4	17	0.995163	3.852169	chr10	103918660	103918780	DNA|hAT-Tip100|MamRep4096	+	chr10	103877557	103918287	OBFC1|NM_024928.4	-	103877557,103889071,103892129,103897547,103898876,103900061,103905090,103910526,103917461,103918099	103882841,103889144,103892252,103897719,103899000,103900223,103905156,103910622,103917656,103918287	0.941176
upper_lobe_of_left_lung_male_adult_37_years	chrX	71198186	71198196	71198195	-	High_confidence	8	8	14	0.819546	3.392747	chrX	71198068	71198187	SINE|MIR|MIR3	-	chrX	71183558	71198175	AL590764.1|ENST00000450860.1	-	71183558,71197908	71184017,71198175	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr15	55513945	55513971	55513945	-	RAMPAGE_only	3	4	12	0.702468	3.277613	chr15	55513405	55516274	LTR|ERV1|HERVE_a-int	-	chr15	55510518	55515806	STRG.63721.1	-	55510518	55515806	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr1	111290845	111290895	111290894	+	High_confidence	7	7	36	2.107405	4.513646	chr1	111290559	111291160	LTR|ERVL|LTR66	+	chr1	111290915	111320557	CHIA|ENST00000369740.5	+	111290915,111310399,111311688,111312189,111314539,111315269,111317680,111317985,111318492,111319119,111319326,111320212	111290950,111310492,111311718,111312391,111314596,111315435,111317805,111318109,111318678,111319239,111319468,111320557	0.833333
upper_lobe_of_left_lung_male_adult_37_years	chr17	47067487	47067513	47067498	-	High_confidence	119	128	418	24.469309	5.784082	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.947368
upper_lobe_of_left_lung_male_adult_37_years	chr11	77175226	77175303	77175302	+	High_confidence	12	15	51	2.985490	4.711258	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.980392
upper_lobe_of_left_lung_male_adult_37_years	chr10	65570509	65570522	65570521	+	High_confidence	6	7	11	0.643929	2.913977	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.636364
upper_lobe_of_left_lung_male_adult_37_years	chr11	13419713	13419730	13419729	-	RAMPAGE_only	4	4	8	0.468312	2.750000	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.875000
upper_lobe_of_left_lung_male_adult_37_years	chr5	55982746	55982800	55982788	-	High_confidence	4	4	17	0.995163	3.625000	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.941176
upper_lobe_of_left_lung_male_adult_37_years	chr5	133089620	133089678	133089677	+	RAMPAGE_only	25	25	64	3.746497	5.266629	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.968750
upper_lobe_of_left_lung_male_adult_37_years	chr19	1032638	1032662	1032661	+	RAMPAGE_only	3	4	9	0.526851	2.725481	chr19	1032659	1032747	SINE|MIR|MIR3	-	chr19	1031136	1038309	CNN2|ENST00000568865.2	+	1031136,1032391,1032558,1036129,1036415,1036878,1037624	1031192,1032458,1032696,1036246,1036562,1037000,1038309	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr2	47369479	47369492	47369479	+	High_confidence	58	59	262	15.337222	6.423905	chr2	47369284	47369484	LTR|ERVL|LTR41B	+	chr2	47369474	47375254	EPCAM|ENST00000474691.1	+	47369474,47373462,47375233	47369581,47374048,47375254	0.709924
upper_lobe_of_left_lung_male_adult_37_years	chr4	185287290	185287298	185287297	+	High_confidence	308	372	656	38.401595	6.688446	chr4	185287289	185287386	DNA|hAT-Charlie|MER5B	-	chr4	185287273	185362059	STRG.24116.6	+	185287273,185288011,185310634,185320732,185323527,185332594,185339378,185341975,185346536,185351444,185353484,185357670,185361923	185287556,185288082,185310816,185320864,185323800,185332759,185339510,185342116,185346650,185351609,185353602,185357737,185362059	0.907012
upper_lobe_of_left_lung_male_adult_37_years	chr11	78081870	78081882	78081872	-	High_confidence	109	178	348	20.371578	5.340115	chr11	78081299	78085065	LTR|ERV1|HERVH-int	+	chr11	78069857	78081883	STRG.52020.1	-	78069857,78072997,78079578,78081826	78070036,78073141,78079786,78081883	0.951149
upper_lobe_of_left_lung_male_adult_37_years	chr12	21662312	21662313	21662312	+	High_confidence	66	74	90	5.268511	4.810423	chr12	21661347	21662731	LTR|ERV1|LTR12C	+	chr12	21662312	21760032	AC010197.1|ENST00000541860.1	+	21662312,21759913	21662771,21760032	0.900000
upper_lobe_of_left_lung_male_adult_37_years	chr11	117185950	117186015	117186006	+	High_confidence	55	55	229	13.405435	6.629246	chr11	117185895	117186041	LINE|L2|L2c	-	chr11	117185950	117192613	SIDT2|ENST00000529441.5	+	117185950,117186583,117187377,117187627,117188707,117189168,117189334,117190165,117190622,117191877,117192253,117192573	117186223,117186636,117187449,117187699,117188826,117189242,117189401,117190289,117190740,117192014,117192362,117192613	0.855895
upper_lobe_of_left_lung_male_adult_37_years	chr1	166850083	166850125	166850124	+	RAMPAGE_only	4	4	13	0.761007	3.418296	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.923077
upper_lobe_of_left_lung_male_adult_37_years	chr5	9265502	9265533	9265502	-	High_confidence	7	8	45	2.634256	4.269329	chr5	9265168	9265679	LTR|ERVL|LTR53	+	chr5	9035025	9265545	STRG.24355.2	-	9035025,9037752,9044372,9050409,9051872,9054086,9062886,9066420,9108139,9118997,9122655,9136503,9154487,9190266,9197167,9201954,9224673,9226868,9237827,9265433	9037705,9043016,9044584,9050457,9052028,9054257,9063105,9066646,9108287,9119141,9122837,9136621,9154695,9190471,9197303,9202240,9224887,9226967,9237890,9265545	0.911111
upper_lobe_of_left_lung_male_adult_37_years	chr10	5291817	5291831	5291817	-	RAMPAGE_only	3	3	8	0.468312	2.521641	chr10	5291580	5291975	LTR|ERVL-MaLR|MSTD	+	chr10	5275172	5288470	AKR1C7P|ENST00000305623.12	-	5275172,5277127,5278077,5282775,5283709,5284814,5285844,5288407	5275237,5277294,5278191,5282898,5283787,5284931,5286012,5288470	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr2	179266234	179266270	179266234	-	RAMPAGE_only	7	7	22	1.287858	3.606937	chr2	179265669	179266289	LINE|L2|L2b	+	chr2	179101691	179264790	SESTD1|ENST00000428443.7	-	179101691,179112723,179115064,179116667,179117531,179121769,179123714,179124363,179132303,179143591,179146401,179149296,179151277,179172119,179176447,179183079,179191786,179264498	179110028,179112845,179115256,179116790,179117613,179121929,179123829,179124558,179132426,179143803,179146457,179149394,179151391,179172233,179176538,179183188,179191866,179264790	0.545455
upper_lobe_of_left_lung_male_adult_37_years	chr8	47360797	47360819	47360804	+	High_confidence	10	10	27	1.580553	3.719080	chr8	47360512	47360818	DNA|hAT-Charlie|MER102b	-	chr8	47360818	47440397	SPIDR|ENST00000521918.6	+	47360818,47396375,47407860,47440322	47360949,47396626,47407961,47440397	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr19	9140390	9140428	9140427	+	High_confidence	24	25	106	6.205136	5.445592	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.792453
upper_lobe_of_left_lung_male_adult_37_years	chr15	45131590	45131637	45131636	+	RAMPAGE_only	7	7	12	0.702468	3.418296	chr15	45131641	45131769	LINE|L2|L2a	+	chr15	45130037	45164966	DUOX1|ENST00000561220.6	+	45130037,45131917,45133863,45134144,45135103,45135473,45135781,45136349,45136528,45137923,45139065,45140894,45141291,45141927,45143189,45144035,45144894,45147432,45147903,45148271,45150631,45151122,45151873,45152285,45153379,45153950,45155801,45160836,45161737,45162218,45163531,45163789,45164778	45130098,45132024,45133947,45134309,45135291,45135675,45135948,45136410,45136625,45138014,45139168,45141070,45141410,45142112,45143303,45144235,45145080,45147658,45147997,45148447,45150701,45151248,45152052,45152516,45153479,45154000,45155929,45160990,45161970,45162377,45163687,45163918,45164966	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	22	22	22	1.287858	3.317640	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr9	121207783	121207798	121207793	+	High_confidence	3	3	9	0.526851	2.500000	chr9	121207755	121207923	SINE|Alu|AluJb	-	chr9	121207793	121265186	GSN|ENST00000434663.5	+	121207793,121209295,121210235,121210783,121231164,121265153	121207897,121209397,121210329,121210867,121231303,121265186	0.555556
upper_lobe_of_left_lung_male_adult_37_years	chr6	133350523	133350574	133350523	+	RAMPAGE_only	15	15	51	2.985490	4.918563	chr6	133350173	133350647	LINE|L2|L2a	-	chr6	133325210	133468569	EYA4|ENST00000421413.6	+	133325210,133382391,133446629,133456555,133461113,133462363,133462620,133464778,133468565	133325414,133382441,133446754,133456648,133461180,133462477,133462764,133464858,133468569	0.862745
upper_lobe_of_left_lung_male_adult_37_years	chr14	77736978	77736988	77736987	-	High_confidence	7	7	12	0.702468	2.913977	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.833333
upper_lobe_of_left_lung_male_adult_37_years	chr15	55514629	55514636	55514631	-	RAMPAGE_only	26	36	74	4.331887	4.956279	chr15	55513405	55516274	LTR|ERV1|HERVE_a-int	-	chr15	55510518	55515806	STRG.63721.1	-	55510518	55515806	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr17	27530763	27530809	27530795	-	RAMPAGE_only	3	3	12	0.702468	2.913977	chr17	27530659	27530810	LINE|L1|L1ME4a	-	chr17	27526385	27527223	AC069366.1|ENST00000583159.1	-	27526385	27527223	0.666667
upper_lobe_of_left_lung_male_adult_37_years	chr3	98733221	98733265	98733230	+	High_confidence	4	4	13	0.761007	2.688722	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.846154
upper_lobe_of_left_lung_male_adult_37_years	chr4	128098305	128098327	128098326	+	RAMPAGE_only	4	6	8	0.468312	2.750000	chr4	128098347	128098409	LINE|L1|L1MC2	+	chr4	128077840	128122352	LARP1B|ENST00000507377.1	+	128077840,128082164,128091000,128091346,128098185,128107138,128114569,128121825	128077962,128082305,128091144,128091512,128098330,128107313,128114742,128122352	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr12	6813556	6813575	6813556	+	High_confidence	3	3	10	0.585390	2.947703	chr12	6813405	6813751	LINE|L1|L1ME4b	-	chr12	6813551	6816204	CD4|ENST00000536563.1	+	6813551,6814141,6814758,6816055	6813602,6814300,6814992,6816204	0.900000
upper_lobe_of_left_lung_male_adult_37_years	chr17	6853886	6853929	6853899	+	High_confidence	3	3	10	0.585390	2.947703	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853929	6895102	ALOX12P2|ENST00000576636.6	+	6853929,6854213,6892002,6894883,6895095	6854060,6854453,6892075,6895006,6895102	0.600000
upper_lobe_of_left_lung_male_adult_37_years	chr4	118835992	118835993	118835992	-	High_confidence	7	7	9	0.526851	2.750000	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr12	8681676	8681677	8681676	+	High_confidence	37	37	44	2.575717	4.900116	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.863636
upper_lobe_of_left_lung_male_adult_37_years	chr10	103181328	103181329	103181328	-	RAMPAGE_only	35	35	35	2.048866	4.900712	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.742857
upper_lobe_of_left_lung_male_adult_37_years	chr5	34244725	34244761	34244753	-	High_confidence	3	3	19	1.112241	3.127987	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.526316
upper_lobe_of_left_lung_male_adult_37_years	chr5	78549224	78549226	78549224	-	High_confidence	5	7	11	0.643929	2.663533	chr5	78548966	78549452	LTR|ERVL-MaLR|MLT1H	-	chr5	78485214	78549151	LHFPL2|ENST00000515007.6	-	78485214,78509783,78549025	78489153,78510398,78549151	0.727273
upper_lobe_of_left_lung_male_adult_37_years	chr7	7484227	7484253	7484227	-	RAMPAGE_only	7	8	21	1.229319	4.011365	chr7	7483997	7484719	LINE|L1|L1MEd	+	chr7	7357555	7512675	STRG.34272.1	-	7357555,7360389,7370724,7372997,7375460,7380659,7380781,7381543,7417858,7419884,7432472,7432631,7436394,7437393,7440789,7443584,7444417,7452318,7453439,7456043,7474600,7477111,7489388,7490577,7506013,7507116,7511090,7511651	7358805,7360528,7370882,7373546,7375497,7380695,7380862,7381612,7417927,7419953,7432541,7432700,7436463,7437462,7440861,7443653,7444489,7452387,7453508,7456112,7474669,7477180,7489457,7490646,7506067,7507161,7511135,7512675	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr4	4269605	4269614	4269613	-	High_confidence	66	70	191	11.180952	4.282270	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.984293
upper_lobe_of_left_lung_male_adult_37_years	chr6	44126186	44126259	44126258	-	High_confidence	16	16	105	6.146597	5.162408	chr6	44126165	44126303	DNA|hAT-Charlie|MER112	-	chr6	44113453	44126267	MRPL14|NM_001318770.1	-	44113453,44116540,44125952	44114209,44116629,44126267	0.914286
upper_lobe_of_left_lung_male_adult_37_years	chr12	40356112	40356185	40356184	+	RAMPAGE_only	4	5	13	0.761007	3.334679	chr12	40356230	40356373	LINE|L2|L2b	+	chr12	40346846	40368879	LRRK2|ENST00000636518.1	+	40346846,40348408,40351538,40354298,40356114,40359259,40363401,40364841,40367005,40367643	40346923,40348509,40351733,40354492,40356187,40359444,40363554,40365050,40367059,40368879	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr6	30848436	30848445	30848436	-	High_confidence	3	4	15	0.878085	3.056565	chr6	30847787	30848423	LTR|ERVL|MER21C	-	chr6	30839525	30848159	LINC02570|ENST00000442852.1	-	30839525,30847036,30847967	30840019,30847149,30848159	0.933333
upper_lobe_of_left_lung_male_adult_37_years	chr18	23576944	23576948	23576944	-	High_confidence	12	12	40	2.341561	4.079773	chr18	23576532	23578195	LTR|ERV1|LTR12C	-	chr18	23573451	23576947	NPC1|ENST00000587223.1	-	23573451,23576480	23573574,23576947	0.950000
upper_lobe_of_left_lung_male_adult_37_years	chr22	18149858	18149869	18149868	+	High_confidence	6	6	25	1.463475	4.334963	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.960000
upper_lobe_of_left_lung_male_adult_37_years	chr6	31587201	31587259	31587201	+	High_confidence	22	22	75	4.390426	4.646787	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	0.946667
upper_lobe_of_left_lung_male_adult_37_years	chr12	122218272	122218273	122218272	-	High_confidence	4	4	7	0.409773	2.584963	chr12	122218031	122218232	DNA|hAT-Charlie|MER58A	-	chr12	122208315	122218289	DIABLO|ENST00000439489.6	-	122208315,122209696,122216487,122216758,122218265	122208577,122209858,122216584,122216869,122218289	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr8	22157366	22157407	22157366	+	High_confidence	2	2	11	0.643929	2.921928	chr8	22157339	22157422	SINE|MIR|MIR3	-	chr8	22156912	22159711	SFTPC|ENST00000522880.1	+	22156912,22159474	22157675,22159711	0.636364
upper_lobe_of_left_lung_male_adult_37_years	chr2	203533429	203533440	203533439	-	High_confidence	7	7	17	0.995163	3.452820	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.882353
upper_lobe_of_left_lung_male_adult_37_years	chr10	34405947	34405966	34405947	-	RAMPAGE_only	5	5	15	0.878085	3.323231	chr10	34405665	34405965	LTR|ERVL|LTR40b	-	chr10	34312263	34426731	PARD3|ENST00000544292.5	-	34312263,34317106,34331116,34336198,34337277,34341626,34347964,34359146,34360070,34374873,34377966,34382539,34384128,34399329,34401825,34426684	34312382,34317338,34331344,34336243,34337426,34341816,34348115,34359317,34360259,34375002,34378106,34382922,34384254,34399413,34401917,34426731	0.666667
upper_lobe_of_left_lung_male_adult_37_years	chr15	78996031	78996036	78996031	-	RAMPAGE_only	15	18	38	2.224483	4.465946	chr15	78995966	78996151	LINE|L2|L2b	+	chr15	78969018	78998071	STRG.64832.2	-	78969018,78971865,78973302,78980619,78990188,78991690,78995739,78997950	78969641,78971934,78973420,78985204,78990273,78991794,78995800,78998071	0.763158
upper_lobe_of_left_lung_male_adult_37_years	chr1	235865237	235865256	235865255	-	RAMPAGE_only	4	6	13	0.761007	3.022055	chr1	235864944	235865509	LINE|L2|L2a	+	chr1	235829408	235866876	LYST|ENST00000468626.2	-	235829408,235833577,235866842	235830424,235833667,235866876	0.769231
upper_lobe_of_left_lung_male_adult_37_years	chr19	5680226	5680249	5680248	-	High_confidence	2	3	9	0.526851	3.000000	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr6	28354199	28354206	28354205	-	High_confidence	5	5	12	0.702468	3.459432	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329631	28354204	ZSCAN31|ENST00000439628.5	-	28329631,28336789,28353861	28329714,28336943,28354204	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr15	33194695	33194715	33194708	-	High_confidence	6	6	18	1.053702	3.572469	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.777778
upper_lobe_of_left_lung_male_adult_37_years	chr9	68975783	68975855	68975842	-	High_confidence	90	95	429	25.113238	6.455906	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68951428	68975842	STRG.43941.1	-	68951428,68957025,68975663	68954945,68957211,68975842	0.510490
upper_lobe_of_left_lung_male_adult_37_years	chr6	113873326	113873347	113873346	-	High_confidence	9	9	19	1.112241	3.787144	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.789474
upper_lobe_of_left_lung_male_adult_37_years	chr5	75336467	75336497	75336467	+	High_confidence	4	4	10	0.585390	2.721928	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336328	75360758	HMGCR|ENST00000511206.5	+	75336328,75342582,75343852,75344244,75345573,75347203,75350041,75350257,75350788,75351067,75351423,75354502,75355055,75355364,75356342,75358656,75359169,75359397,75359984,75360287	75336617,75342770,75343964,75344332,75345658,75347309,75350148,75350374,75350949,75351315,75351602,75354697,75355214,75355522,75356448,75358827,75359310,75359556,75360139,75360758	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr2	73072193	73072217	73072193	-	High_confidence	4	4	8	0.468312	2.500000	chr2	73072181	73072540	LINE|L2|L2b	+	chr2	72942035	73071836	SFXN5|ENST00000272433.6	-	72942035,72961130,72968447,72971569,72988257,72998948,73000430,73001524,73020238,73022521,73023187,73040853,73058527,73071603	72945099,72961248,72968533,72971685,72988348,72999014,73000487,73001578,73020264,73022576,73023214,73040931,73058596,73071836	0.625000
upper_lobe_of_left_lung_male_adult_37_years	chr2	120100766	120100804	120100766	+	RAMPAGE_only	4	4	10	0.585390	3.169925	chr2	120100735	120100772	LINE|CR1|L3b	-	chr2	120013210	120105115	EPB41L5|ENST00000443124.5	+	120013210,120019076,120042005,120073177,120074099,120075475,120075700,120076970,120077228,120078492,120087170,120090346,120091554,120093248,120100243,120100698,120104059	120013681,120019264,120042110,120073220,120074178,120075520,120075753,120077091,120077316,120078581,120087240,120090516,120091661,120093276,120100286,120100814,120105115	0.900000
upper_lobe_of_left_lung_male_adult_37_years	chr11	65436497	65436686	65436622	+	RAMPAGE_only	15	15	102	5.970980	4.313807	chr11	65436611	65437060	LINE|L1|L1ME4b	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.970588
upper_lobe_of_left_lung_male_adult_37_years	chr4	153688003	153688027	153688003	+	RAMPAGE_only	3	4	10	0.585390	3.321928	chr4	153687920	153688176	LTR|ERV1|MER57A-int	+	chr4	153684251	153706260	TLR2|NM_001318787.1	+	153684251,153687916,153702226,153702891	153684360,153687988,153702510,153706260	0.700000
upper_lobe_of_left_lung_male_adult_37_years	chr6	143828842	143828855	143828842	+	RAMPAGE_only	2	4	10	0.585390	3.121928	chr6	143828714	143828929	DNA|hAT-Charlie|MER20B	-	chr6	143677964	143831185	PHACTR2|NM_001100164.1	+	143677964,143712015,143748984,143753753,143760400,143765260,143772257,143774058,143777327,143783218,143788772,143807056,143823673	143678209,143712183,143749065,143753912,143760640,143765798,143772457,143774215,143777383,143783280,143788910,143807133,143831185	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr6	77369106	77369119	77369106	-	RAMPAGE_only	3	3	10	0.585390	3.121928	chr6	77368941	77369265	LTR|ERV1|LTR1A2	-	chr6	77271336	77316672	STRG.31148.1	-	77271336,77273026,77316635	77271493,77273307,77316672	0.700000
upper_lobe_of_left_lung_male_adult_37_years	chr19	17336685	17336727	17336685	+	High_confidence	7	7	27	1.580553	4.315824	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.851852
upper_lobe_of_left_lung_male_adult_37_years	chr3	136625270	136625271	136625270	-	RAMPAGE_only	23	23	23	1.346397	4.142915	chr3	136625199	136625518	LINE|L2|L2b	+	chr3	136499765	136604473	STAG1|ENST00000462818.1	-	136499765,136502627,136521212,136542118,136568764,136604308	136500296,136502779,136521417,136542195,136568861,136604473	0.956522
upper_lobe_of_left_lung_male_adult_37_years	chr2	187520541	187520543	187520542	-	High_confidence	5	9	11	0.643929	2.913977	chr2	187517160	187520609	LINE|L1|L1P3	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr7	150308263	150308281	150308273	-	High_confidence	5	5	18	1.053702	3.852169	chr7	150307703	150312283	LTR|ERV1|HERVH-int	+	chr7	150261098	150308270	STRG.38574.4	-	150261098,150284752,150286366,150289544,150293311,150295251,150308226	150267295,150284845,150286540,150289593,150293419,150295347,150308270	0.833333
upper_lobe_of_left_lung_male_adult_37_years	chr16	53445782	53445794	53445782	+	High_confidence	3	5	8	0.468312	2.500000	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr22	23536877	23536878	23536877	+	High_confidence	22	23	28	1.639092	3.570659	chr22	23536061	23537026	LTR|ERVK|LTR5_Hs	+	chr22	23536880	23539480	PCAT14|ENST00000629869.1	+	23536880,23538760	23537136,23539480	0.928571
upper_lobe_of_left_lung_male_adult_37_years	chr14	55796687	55796688	55796687	-	High_confidence	6	7	8	0.468312	2.807355	chr14	55796522	55796882	LTR|ERVL-MaLR|THE1B	-	chr14	55781136	55796688	LINC00520|ENST00000649892.1	-	55781136,55793367,55796602	55782581,55793456,55796688	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr21	39082775	39082800	39082775	-	RAMPAGE_only	6	6	18	1.053702	3.690117	chr21	39082579	39082775	SINE|MIR|MIRc	-	chr21	39076466	39077809	STRG.78039.1	-	39076466	39077809	0.722222
upper_lobe_of_left_lung_male_adult_37_years	chr22	50541377	50541389	50541388	+	RAMPAGE_only	4	5	16	0.936624	3.373557	chr22	50541317	50541613	SINE|Alu|AluSx	-	chr22	50542649	50543011	U62317.4|ENST00000609268.1	+	50542649	50543011	0.937500
upper_lobe_of_left_lung_male_adult_37_years	chr14	57274833	57274843	57274842	+	RAMPAGE_only	8	8	13	0.761007	3.022055	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.692308
upper_lobe_of_left_lung_male_adult_37_years	chr1	56974423	56974471	56974470	-	RAMPAGE_only	23	24	96	5.619746	5.935332	chr1	56974142	56974688	LTR|ERVL-MaLR|MLT1H1	-	chr1	56929209	56966140	C8B|NM_001278544.1	-	56929209,56931809,56933334,56940848,56943695,56945820,56949554,56952047,56954685,56956768,56959528,56960019,56965856	56929558,56931878,56933488,56941012,56943824,56946061,56949752,56952180,56954827,56956910,56959657,56960176,56966140	0.531250
upper_lobe_of_left_lung_male_adult_37_years	chr10	122127120	122127130	122127120	+	High_confidence	3	3	7	0.409773	2.807355	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122127019	122226480	STRG.49433.6	+	122127019,122132608,122143571,122195039,122210396,122215390,122216626,122224725,122226365	122127142,122132734,122143706,122195176,122211708,122215451,122216828,122224787,122226480	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr7	6054548	6054588	6054548	-	RAMPAGE_only	8	8	22	1.287858	3.341446	chr7	6054207	6054503	SINE|Alu|AluSx1	-	chr7	6040975	6059164	STRG.34211.2	-	6040975,6042932,6044561,6046070,6046991,6048806,6049911,6054545,6058965	6041219,6042990,6044661,6046151,6047091,6048844,6050045,6054704,6059164	0.863636
upper_lobe_of_left_lung_male_adult_37_years	chr4	185287499	185287502	185287501	+	High_confidence	23	35	50	2.926951	4.762170	chr4	185287477	185287662	DNA|hAT-Charlie|MER3	+	chr4	185287273	185362059	STRG.24116.6	+	185287273,185288011,185310634,185320732,185323527,185332594,185339378,185341975,185346536,185351444,185353484,185357670,185361923	185287556,185288082,185310816,185320864,185323800,185332759,185339510,185342116,185346650,185351609,185353602,185357737,185362059	0.720000
upper_lobe_of_left_lung_male_adult_37_years	chr13	106561950	106561951	106561950	-	High_confidence	27	28	32	1.873249	4.736297	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.781250
upper_lobe_of_left_lung_male_adult_37_years	chr3	14047184	14047206	14047205	-	High_confidence	8	9	13	0.761007	3.022055	chr3	14047032	14047318	LTR|ERV1|LTR10B1	-	chr3	14041287	14047229	STRG.14237.1	-	14041287,14046812	14041628,14047229	0.615385
upper_lobe_of_left_lung_male_adult_37_years	chr10	86974702	86974721	86974708	-	High_confidence	3	3	9	0.526851	2.750000	chr10	86974596	86974877	LINE|L1|L1M7	-	chr10	86972907	86973965	STRG.48242.1	-	86972907	86973965	0.555556
upper_lobe_of_left_lung_male_adult_37_years	chr9	92536601	92536602	92536601	-	High_confidence	15	16	16	0.936624	3.139572	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.937500
upper_lobe_of_left_lung_male_adult_37_years	chr16	761049	761120	761114	+	High_confidence	109	114	465	27.220642	5.818913	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	0.976344
upper_lobe_of_left_lung_male_adult_37_years	chr5	176411458	176411459	176411458	-	RAMPAGE_only	25	29	35	2.048866	3.922473	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392641	176416261	CLTB|ENST00000508425.5	-	176392641,176397943,176410256,176416176	176392932,176398047,176410303,176416261	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr17	19386333	19386460	19386333	-	High_confidence	7	7	43	2.517178	5.100683	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr14	101731410	101731414	101731413	+	High_confidence	43	44	76	4.448965	5.510495	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.907895
upper_lobe_of_left_lung_male_adult_37_years	chr6	28354022	28354042	28354022	-	High_confidence	8	8	37	2.165944	4.614997	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28324736	28354195	ZSCAN31|ENST00000396838.6	-	28324736,28327382,28329302,28336789,28337755,28341745,28353861,28354130	28326854,28327533,28329714,28336943,28337893,28341792,28353952,28354195	0.702703
upper_lobe_of_left_lung_male_adult_37_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	18	18	18	1.053702	3.503258	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr4	128428000	128428064	128428005	+	High_confidence	37	38	126	7.375916	5.785785	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr20	44532569	44532570	44532569	+	High_confidence	7	9	11	0.643929	3.095795	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.727273
upper_lobe_of_left_lung_male_adult_37_years	chr14	106845830	106845859	106845858	-	RAMPAGE_only	4	5	23	1.346397	4.229871	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106810441	106811131	IGHV3-74|ENST00000424969.2	-	106810441,106810849	106810746,106811131	0.521739
upper_lobe_of_left_lung_male_adult_37_years	chr5	172958890	172958925	172958918	+	High_confidence	23	27	72	4.214809	4.547942	chr5	172958944	172959238	SINE|Alu|AluY	+	chr5	172958908	172969771	RPL26L1|NM_001317980.1	+	172958908,172959864,172968458,172969412	172959007,172960041,172968599,172969771	0.958333
upper_lobe_of_left_lung_male_adult_37_years	chr9	92536649	92536675	92536674	-	High_confidence	9	10	26	1.522014	3.253661	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.961538
upper_lobe_of_left_lung_male_adult_37_years	chr14	102083051	102083294	102083165	-	RAMPAGE_only	13	13	173	10.127250	6.319417	chr14	102083055	102083143	LINE|L1|L1M4c	-	chr14	102080737	102087175	HSP90AA1|NM_005348.3	-	102080737,102082110,102083033,102083545,102083792,102084398,102084680,102085297,102085757,102086216,102086985	102081821,102082444,102083302,102083693,102083983,102084564,102084998,102085431,102086124,102086378,102087175	0.994220
upper_lobe_of_left_lung_male_adult_37_years	chr15	48002797	48002869	48002797	-	RAMPAGE_only	5	5	25	1.463475	3.813661	chr15	48002401	48002887	LTR|ERVL|LTR16A2	+	chr15	47960300	47987859	STRG.63480.1	-	47960300,47987636	47960625,47987859	0.880000
upper_lobe_of_left_lung_male_adult_37_years	chr9	39809822	39809859	39809858	-	High_confidence	10	13	39	2.283022	4.422544	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803190	39810013	STRG.43520.2	-	39803190,39809485,39809730	39803859,39809615,39810013	0.794872
upper_lobe_of_left_lung_male_adult_37_years	chr5	42993219	42993240	42993238	-	High_confidence	4	6	14	0.819546	3.392747	chr5	42992907	42993217	SINE|Alu|AluSz	-	chr5	42985486	42993253	STRG.24914.1	-	42985486,42990838	42985662,42993253	0.928571
upper_lobe_of_left_lung_male_adult_37_years	chr11	17208537	17208564	17208537	+	RAMPAGE_only	2	2	8	0.468312	2.750000	chr11	17208523	17208605	SINE|MIR|MIRc	-	chr11	17260339	17349980	NUCB2|ENST00000646648.1	+	17260339,17269184,17276007,17282788,17295323,17296103,17301743,17309571,17310824,17311184,17311871,17312027,17315385,17330126,17330901,17337347,17349344	17260501,17269331,17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17337534,17349980	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr7	101217578	101217595	101217580	-	High_confidence	5	8	16	0.936624	3.640224	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	0.937500
upper_lobe_of_left_lung_male_adult_37_years	chr2	10303727	10303743	10303727	+	High_confidence	2	2	7	0.409773	2.521641	chr2	10303772	10303951	SINE|MIR|MIRb	+	chr2	10303699	10427617	HPCAL1|NM_134421.2	+	10303699,10396834,10408561,10419733,10422982,10426723	10303942,10396920,10408734,10420135,10423088,10427617	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr1	47004182	47004183	47004182	+	High_confidence	16	17	20	1.170780	3.826875	chr1	47003946	47004346	LTR|ERV1|MER51B	+	chr1	47004239	47050754	CYP4X1|NM_001320290.1	+	47004239,47029989,47031435,47033240,47035805,47036016,47038659,47039341,47046466,47048564,47049421,47049999	47004369,47030131,47031480,47033368,47035933,47036171,47038766,47039532,47046600,47048629,47049504,47050754	0.900000
upper_lobe_of_left_lung_male_adult_37_years	chr18	9950199	9950212	9950211	+	RAMPAGE_only	5	5	15	0.878085	3.182006	chr18	9950041	9950258	LINE|L2|L2c	-	chr18	9947593	9951353	VAPA|ENST00000577539.1	+	9947593	9951353	0.800000
upper_lobe_of_left_lung_male_adult_37_years	chr19	10285151	10285893	10285892	+	RAMPAGE_only	46	82	1272	74.461628	5.965449	chr19	10285891	10285961	DNA|hAT-Tip100|MER91A	+	chr19	10270840	10286615	ICAM1|NM_000201.2	+	10270840,10274764,10283480,10284032,10284402,10284782,10285114	10271226,10275028,10283786,10284320,10284657,10285028,10286615	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chrX	71383124	71383147	71383146	+	RAMPAGE_only	3	3	6	0.351234	2.584963	chrX	71383170	71383464	LINE|L1|L1MC5a	+	chrX	71387085	71388301	TAF1|ENST00000472567.1	+	71387085,71388236	71387461,71388301	0.833333
upper_lobe_of_left_lung_male_adult_37_years	chr1	71088990	71088993	71088990	-	RAMPAGE_only	5	5	9	0.526851	2.725481	chr1	71088826	71088961	LINE|L2|L2c	-	chr1	71063290	71081297	ZRANB2|ENST00000370920.7	-	71063290,71066775,71069275,71070826,71072120,71072471,71076794,71078456,71078655,71080939	71065137,71066934,71069362,71070996,71072255,71072548,71076877,71078565,71078708,71081297	0.555556
upper_lobe_of_left_lung_male_adult_37_years	chr1	2060425	2060450	2060425	+	RAMPAGE_only	2	2	9	0.526851	2.500000	chr1	2060396	2060490	LINE|L2|L2	-	chr1	2050484	2146108	PRKCZ|ENST00000468310.5	+	2050484,2055440,2059540,2135261,2144209,2146026	2050701,2055562,2059591,2135347,2144341,2146108	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr3	37058855	37058907	37058906	-	RAMPAGE_only	9	9	37	2.165944	3.779543	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053749	37056080	STRG.14882.17	-	37053749,37054410	37053961,37056080	0.945946
upper_lobe_of_left_lung_male_adult_37_years	chr5	157107289	157107317	157107316	-	High_confidence	13	13	23	1.346397	3.916127	chr5	157107099	157107287	DNA|hAT-Charlie|MER5A	-	chr5	157106653	157107302	HAVCR2|ENST00000517358.1	-	157106653,157107045	157106962,157107302	0.782609
upper_lobe_of_left_lung_male_adult_37_years	chr12	111873	111884	111875	-	High_confidence	145	255	464	27.162103	6.679156	chr12	110820	111833	LTR|ERV1|HERVP71A-int	-	chr12	106523	111850	AC026369.3|ENST00000540226.1	-	106523,111618	106877,111850	0.784483
upper_lobe_of_left_lung_male_adult_37_years	chr6	31186523	31186568	31186567	-	High_confidence	4	4	21	1.229319	3.784942	chr6	31186290	31186769	LTR|ERV1|LTR2B	-	chr6	31181800	31186491	STRG.29909.6	-	31181800	31186491	0.952381
upper_lobe_of_left_lung_male_adult_37_years	chrX	94600177	94600283	94600177	-	High_confidence	216	217	1324	77.505657	7.833971	chrX	94599902	94600549	LTR|ERVL|LTR66	-	chrX	94523105	94600302	STRG.81334.13	-	94523105,94534663	94534573,94600302	0.851964
upper_lobe_of_left_lung_male_adult_37_years	chr11	2336129	2336130	2336129	+	High_confidence	11	13	13	0.761007	3.700440	chr11	2335784	2336242	LTR|ERV1|LTR10E	+	chr11	2336139	2342287	STRG.49870.1	+	2336139,2341918	2336509,2342287	0.923077
upper_lobe_of_left_lung_male_adult_37_years	chr2	218287279	218287301	218287279	-	High_confidence	3	3	9	0.526851	2.750000	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr12	79542148	79542219	79542218	+	High_confidence	7	7	45	2.634256	4.527169	chr12	79540300	79543266	LTR|ERV1|HERVH-int	+	chr12	79542205	79550346	AC027288.1|ENST00000551032.5	+	79542205,79546065,79550108	79542410,79546176,79550346	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr16	2330614	2330687	2330626	-	High_confidence	7	7	35	2.048866	4.429683	chr16	2330319	2330618	SINE|Alu|AluSq	-	chr16	2323338	2329724	ABCA3|ENST00000567910.1	-	2323338,2324403,2326009,2326412,2328452,2329647	2323688,2324531,2326274,2326492,2328757,2329724	0.800000
upper_lobe_of_left_lung_male_adult_37_years	chr19	5775158	5775184	5775183	+	High_confidence	10	10	40	2.341561	4.681881	chr19	5775110	5775356	LTR|ERVK|LTR3B_	-	chr19	5775241	5778499	CATSPERD|ENST00000448307.1	+	5775241,5776160,5778375	5775289,5776315,5778499	0.700000
upper_lobe_of_left_lung_male_adult_37_years	chr2	204544974	204544986	204544985	+	High_confidence	13	14	21	1.229319	3.321928	chr2	204544936	204545029	SINE|MIR|MIR3	+	chr2	204545792	205048595	PARD3B|ENST00000415947.1	+	204545792,204686180,204965151,205047580	204546171,204686282,204965323,205048595	0.809524
upper_lobe_of_left_lung_male_adult_37_years	chr7	150433729	150433750	150433729	+	High_confidence	2	3	8	0.468312	2.750000	chr7	150433631	150433743	LINE|CR1|CR1_Mam	-	chr7	150433729	150442892	LINC00996|ENST00000486954.1	+	150433729,150435029,150442548	150433829,150435157,150442892	0.625000
upper_lobe_of_left_lung_male_adult_37_years	chr1	97904654	97904676	97904654	-	RAMPAGE_only	34	41	87	5.092894	5.677759	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.689655
upper_lobe_of_left_lung_male_adult_37_years	chr13	46073878	46073888	46073878	-	RAMPAGE_only	2	2	7	0.409773	2.584963	chr13	46073696	46073850	DNA|hAT-Charlie|MER5A1	-	chr13	46053194	46105018	CPB2|ENST00000645658.1	-	46053194,46055761,46058178,46064647,46067306,46073872,46078799,46082440,46084218,46087744,46104935	46053798,46055849,46058381,46064741,46067417,46073977,46078901,46082549,46084343,46087820,46105018	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr15	52548793	52548872	52548828	-	RAMPAGE_only	17	18	68	3.980653	4.222610	chr15	52548772	52548988	DNA|TcMar-Tigger|MamRep434	-	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr9	110489658	110489659	110489658	-	RAMPAGE_only	5	7	8	0.468312	2.521641	chr9	110489280	110489644	LTR|ERVL-MaLR|THE1B	-	chr9	110442478	110550054	SVEP1|ENST00000467821.1	-	110442478,110445836,110446899,110450058,110451288,110455589,110457255,110458470,110458951,110465864,110468939,110471363,110472158,110476203,110479634,110481241,110482360,110483585,110489649,110496814,110499040,110503037,110512925,110513947,110546114,110549848	110443720,110446038,110447057,110450260,110451402,110455703,110457352,110458562,110459113,110466026,110469101,110471597,110472323,110476315,110479756,110481436,110482492,110483693,110489779,110496933,110499238,110503217,110513105,110514106,110546291,110550054	0.875000
upper_lobe_of_left_lung_male_adult_37_years	chr3	134595263	134595264	134595263	+	RAMPAGE_only	8	8	8	0.468312	3.000000	chr3	134595069	134595442	LTR|ERVL-MaLR|THE1C	+	chr3	134597823	134628104	EPHB1|ENST00000472904.5	+	134597823,134615183,134627939	134597984,134615438,134628104	0.625000
upper_lobe_of_left_lung_male_adult_37_years	chr19	39136881	39136911	39136887	+	RAMPAGE_only	10	10	33	1.931788	4.567100	chr19	39136818	39136982	LINE|L2|L2b	-	chr19	39125833	39182816	PAK4|ENST00000599386.5	+	39125833,39168229,39169531,39173575,39174930,39175311,39176589,39177674,39178423	39125919,39168302,39169757,39174010,39175064,39175438,39176715,39177809,39182816	0.606061
upper_lobe_of_left_lung_male_adult_37_years	chr1	174874418	174874458	174874418	+	High_confidence	27	32	147	8.605235	6.291767	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874385	174958190	RABGAP1L|NM_001243763.1	+	174874385,174877391,174957456,174957890	174874506,174877605,174957549,174958190	0.503401
upper_lobe_of_left_lung_male_adult_37_years	chr21	34512209	34512219	34512209	-	High_confidence	12	13	33	1.931788	4.199718	chr21	34511639	34512477	LTR|Gypsy|MamGyp-int	-	chr21	34509455	34512207	KCNE1|ENST00000489175.1	-	34509455,34512026	34511315,34512207	0.515152
upper_lobe_of_left_lung_male_adult_37_years	chr2	110109310	110109311	110109310	-	RAMPAGE_only	7	7	7	0.409773	2.521641	chr2	110107268	110112871	LINE|L1|L1PB1	+	chr2	110085711	110115821	MALL|ENST00000424988.1	-	110085711,110087571,110091602,110097498,110115687	110085757,110087697,110091770,110097604,110115821	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr19	9700673	9700674	9700673	-	High_confidence	14	14	14	0.819546	2.835238	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr2	143247318	143247353	143247318	+	RAMPAGE_only	2	2	7	0.409773	2.521641	chr2	143246994	143247508	LTR|ERVL|LTR32	+	chr2	143129329	143768352	ARHGAP15|NM_018460.3	+	143129329,143155476,143202133,143216383,143228580,143250510,143435600,143436912,143487372,143519265,143556407,143624132,143703418,143767988	143129466,143155655,143202202,143216445,143228668,143250600,143435699,143437042,143487495,143519364,143556485,143624267,143703524,143768352	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr6	144533090	144533113	144533112	+	RAMPAGE_only	3	4	10	0.585390	3.321928	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr16	10531271	10531319	10531318	-	RAMPAGE_only	9	12	26	1.522014	4.286790	chr16	10530980	10531270	SINE|Alu|AluSx1	-	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.961538
upper_lobe_of_left_lung_male_adult_37_years	chr16	4355592	4355593	4355592	-	High_confidence	104	104	104	6.088058	5.232543	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.865385
upper_lobe_of_left_lung_male_adult_37_years	chr16	10444571	10444572	10444571	-	RAMPAGE_only	5	5	8	0.468312	3.000000	chr16	10443659	10445502	LTR|ERV1|HERVIP10B3-int	-	chr16	10440089	10498402	STRG.66146.7	-	10440089,10444075	10441844,10498402	0.875000
upper_lobe_of_left_lung_male_adult_37_years	chr2	231270615	231270630	231270629	+	High_confidence	3	3	9	0.526851	2.500000	chr2	231270419	231270687	LINE|L1|HAL1	-	chr2	231270742	231291435	ARMC9|ENST00000481520.1	+	231270742,231272954,231276635,231278381,231282058,231291352	231271072,231273078,231276775,231278458,231282133,231291435	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr16	27332388	27332393	27332388	+	RAMPAGE_only	13	17	24	1.404936	4.186704	chr16	27332160	27332534	LTR|ERVL-MaLR|THE1C	-	chr16	27341288	27364777	IL4R|ENST00000170630.6	+	27341288,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27364777	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr3	536198	536258	536198	+	High_confidence	6	10	25	1.463475	3.973661	chr3	535186	536320	LTR|ERV1|LTR12D	-	chr3	536230	846015	LINC01266|ENST00000420823.5	+	536230,592104,750214,840714,842375	536327,592183,750250,840810,846015	0.520000
upper_lobe_of_left_lung_male_adult_37_years	chrX	94701001	94701071	94701044	+	High_confidence	129	129	651	38.108899	6.893055	chrX	94701008	94701158	LTR|ERV1|HERVH-int	-	chrX	94700923	94946257	STRG.81397.1	+	94700923,94746874,94915658	94702166,94746970,94946257	0.874040
upper_lobe_of_left_lung_male_adult_37_years	chr14	91883349	91883350	91883349	-	RAMPAGE_only	12	15	17	0.995163	3.625000	chr14	91883123	91883337	LINE|CR1|L3	-	chr14	91870042	91947074	FBLN5|ENST00000556154.5	-	91870042,91877486,91881291,91882953,91887192,91891220,91894949,91936946,91940564,91942906,91946710	91870385,91877682,91881418,91883076,91887312,91891337,91895072,91937201,91940616,91942961,91947074	0.823529
upper_lobe_of_left_lung_male_adult_37_years	chr9	77944995	77945044	77945040	-	RAMPAGE_only	7	7	27	1.580553	4.310443	chr9	77944910	77945186	DNA|TcMar-Tigger|Tigger19b	+	chr9	77797527	78030604	GNAQ|ENST00000411677.1	-	77797527,77815615,77922160,78030514	77797648,77815770,77922345,78030604	0.518519
upper_lobe_of_left_lung_male_adult_37_years	chr2	227164620	227164621	227164620	+	High_confidence	90	90	112	6.556370	6.324408	chr2	227164585	227164910	LINE|L1|L1M4b	+	chr2	227164564	227314792	COL4A3|NM_000091.4	+	227164564,227237967,227240142,227244319,227244950,227245953,227246684,227247557,227248442,227251139,227251335,227253295,227253560,227254111,227254655,227256025,227256342,227257602,227259792,227261081,227263779,227266416,227266992,227269909,227270769,227272948,227276384,227277448,227279792,227280439,227280892,227282364,227283766,227284210,227289149,227289998,227290746,227293190,227294489,227294963,227295268,227297673,227298681,227303037,227303858,227304018,227304984,227307709,227308898,227309203,227310775,227311785	227164813,227238024,227240232,227244364,227244995,227246016,227246738,227247584,227248520,227251202,227251371,227253337,227253638,227254174,227254715,227256070,227256396,227257644,227259877,227261117,227263944,227266509,227267088,227269980,227270952,227273117,227276477,227277553,227279890,227280590,227281006,227282532,227283856,227284345,227289248,227290088,227290886,227293317,227294570,227295062,227295316,227297859,227298812,227303110,227303930,227304144,227305083,227307919,227309076,227309318,227310948,227314792	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr11	60182517	60182551	60182550	-	High_confidence	7	7	18	1.053702	3.614369	chr11	60182534	60182621	SINE|MIR|MIRb	+	chr11	60181411	60182558	MS4A6A|ENST00000533660.1	-	60181411,60182317	60181741,60182558	0.777778
upper_lobe_of_left_lung_male_adult_37_years	chr11	78365317	78365344	78365317	-	RAMPAGE_only	2	2	11	0.643929	3.321928	chr11	78365176	78365282	SINE|MIR|MIR3	-	chr11	78215296	78366884	STRG.52067.1	-	78215296,78220318,78221676,78222104,78223411,78225107,78226464,78250156,78280600,78364015,78366860	78219415,78220444,78221779,78222195,78223676,78225202,78227051,78250400,78280901,78366730,78366884	0.818182
upper_lobe_of_left_lung_male_adult_37_years	chr16	19430522	19430573	19430572	+	RAMPAGE_only	4	4	21	1.229319	3.621928	chr16	19430590	19430808	DNA|hAT-Charlie|Charlie18a	+	chr16	19417695	19499113	TMC5|ENST00000542583.6	+	19417695,19430412,19439959,19444080,19449541,19460234,19463279,19463775,19466081,19469680,19472087,19474124,19477439,19479430,19481369,19486944,19487192,19490394,19492149,19494261,19497120,19497919	19418092,19430640,19440826,19444250,19449631,19460334,19463367,19464024,19466233,19469825,19472243,19474276,19477518,19479528,19481465,19487020,19487326,19490568,19492228,19494366,19497163,19499113	0.952381
upper_lobe_of_left_lung_male_adult_37_years	chr5	14653390	14653391	14653390	-	High_confidence	29	31	32	1.873249	3.558676	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.937500
upper_lobe_of_left_lung_male_adult_37_years	chr9	129489111	129489131	129489125	+	High_confidence	15	20	42	2.458639	4.558519	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr1	19344364	19344389	19344388	-	RAMPAGE_only	3	3	12	0.702468	3.095795	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.833333
upper_lobe_of_left_lung_male_adult_37_years	chr13	109268998	109269046	109269011	-	High_confidence	195	197	625	36.586885	6.528139	chr13	109265521	109269052	LTR|ERV1|HERVH-int	+	chr13	109177573	109269558	STRG.59795.3	-	109177573,109267733,109268785	109201487,109267840,109269558	0.694400
upper_lobe_of_left_lung_male_adult_37_years	chr7	101308269	101308317	101308293	+	High_confidence	6	7	53	3.102568	5.119153	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.943396
upper_lobe_of_left_lung_male_adult_37_years	chr12	50924078	50924079	50924078	+	High_confidence	8	10	10	0.585390	2.721928	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50923471	50932510	METTL7A|ENST00000548553.1	+	50923471,50924666,50929913	50924080,50925536,50932510	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr2	210253426	210253427	210253426	+	High_confidence	447	460	621	36.352729	6.981003	chr2	210253335	210253584	LTR|ERVL|LTR32	+	chr2	210252864	210470541	STRG.12959.1	+	210252864,210427748,210429364,210460474,210468504,210468681	210253468,210427923,210429451,210460543,210468584,210470541	0.602254
upper_lobe_of_left_lung_male_adult_37_years	chr14	73463610	73463642	73463624	-	High_confidence	30	30	61	3.570880	5.050111	chr14	73463309	73463831	LTR|ERVL-MaLR|MLT1F2	-	chr14	73366896	73463625	AC005280.3|ENST00000556700.5	-	73366896,73409936,73462528,73463474	73366981,73410068,73462689,73463625	0.557377
upper_lobe_of_left_lung_male_adult_37_years	chr17	4610469	4610572	4610469	+	High_confidence	17	17	122	7.141760	5.496609	chr17	4610403	4610704	SINE|Alu|AluJb	+	chr17	4610448	4617650	LINC01996|ENST00000573270.1	+	4610448,4616762	4610833,4617650	0.983607
upper_lobe_of_left_lung_male_adult_37_years	chr11	48044786	48044801	48044786	+	High_confidence	2	3	8	0.468312	2.750000	chr11	48044816	48044902	LINE|L2|L2b	+	chr11	48044803	48121147	PTPRJ|ENST00000526550.1	+	48044803,48046229,48110057,48112746,48121002	48044871,48046331,48110076,48112983,48121147	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr12	101230116	101230117	101230116	+	High_confidence	998	999	1016	59.475640	5.263150	chr12	101230117	101230409	SINE|Alu|AluSz	+	chr12	101230113	101230433	STRG.56921.1	+	101230113	101230433	0.982283
upper_lobe_of_left_lung_male_adult_37_years	chr4	68906924	68906943	68906942	-	High_confidence	4	4	13	0.761007	2.873141	chr4	68905745	68907106	LTR|ERV1|HERV3-int	-	chr4	68901007	68906983	AC021146.12|ENST00000608365.1	-	68901007,68906874	68901375,68906983	0.769231
upper_lobe_of_left_lung_male_adult_37_years	chr10	72355145	72355146	72355145	-	High_confidence	7	7	11	0.643929	3.459432	chr10	72355121	72355196	SINE|MIR|MIR3	-	chr10	72332829	72355149	DNAJB12|NM_001002762.2	-	72332829,72336523,72338201,72340788,72340984,72343365,72344949,72354764	72335931,72336696,72338311,72340868,72341170,72343511,72345127,72355149	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr12	51404113	51404140	51404139	+	High_confidence	14	15	38	2.224483	4.543852	chr12	51404013	51404316	LTR|Gypsy|MamGyp-int	+	chr12	51403162	51497864	SLC4A8|ENST00000604314.5	+	51403162,51440707,51450875,51452123,51453538,51457350,51458558,51459950,51461203,51462309,51463613,51469613,51470391,51471286,51474341,51475044,51485786,51488698,51489699,51493703,51494944,51496986	51403289,51440789,51451022,51452259,51453699,51457539,51458650,51460108,51461291,51462456,51463714,51469788,51470525,51471532,51474447,51475206,51485900,51488860,51489951,51493772,51495118,51497864	0.815789
upper_lobe_of_left_lung_male_adult_37_years	chr10	79659995	79659996	79659995	-	RAMPAGE_only	58	63	64	3.746497	5.453881	chr10	79659933	79660018	LINE|L2|L2a	+	chr10	79555851	79560461	SFTPA2|NM_001320813.1	-	79555851,79558051,79558885,79559311,79559968,79560363	79557585,79558129,79559005,79559509,79559998,79560461	0.968750
upper_lobe_of_left_lung_male_adult_37_years	chr17	20921012	20921028	20921012	+	High_confidence	3	3	13	0.761007	3.238901	chr17	20920944	20921033	LINE|L2|L2a	+	chr17	20921044	20930046	CCDC144NL-AS1|ENST00000443508.6	+	20921044,20924358,20929430	20921169,20924833,20930046	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr8	39017064	39017078	39017077	+	High_confidence	4	4	10	0.585390	2.725481	chr8	39016988	39017120	SINE|MIR|MIRb	-	chr8	39017035	39021713	ADAM9|ENST00000481058.1	+	39017035,39018852,39021642	39017414,39018918,39021713	0.800000
upper_lobe_of_left_lung_male_adult_37_years	chr3	28347646	28347654	28347653	-	High_confidence	49	49	80	4.683121	5.515312	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.837500
upper_lobe_of_left_lung_male_adult_37_years	chr6	28335904	28335914	28335904	-	High_confidence	3	3	7	0.409773	2.521641	chr6	28335119	28335915	LTR|ERV1|LTR25	+	chr6	28324736	28336134	ZSCAN31|ENST00000439158.5	-	28324736,28327382,28329302,28335829	28326854,28327533,28329778,28336134	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr8	17803594	17803608	17803607	+	RAMPAGE_only	4	4	11	0.643929	2.521928	chr8	17803546	17803836	SINE|Alu|AluSx1	+	chr8	17801354	17820625	STRG.39281.1	+	17801354,17808941,17809596,17820357	17803866,17809005,17809687,17820625	0.909091
upper_lobe_of_left_lung_male_adult_37_years	chr12	124453441	124453474	124453441	-	RAMPAGE_only	2	4	10	0.585390	2.846439	chr12	124453412	124453547	LINE|L2|L2	-	chr12	124430640	124483769	NCOR2|ENST00000448008.1	-	124430640,124437929,124449814,124466172,124472951,124483595	124430787,124437996,124449867,124466286,124473131,124483769	0.700000
upper_lobe_of_left_lung_male_adult_37_years	chr12	12912890	12913270	12912890	+	RAMPAGE_only	47	49	791	46.304362	6.701645	chr12	12912821	12912985	SINE|Alu|FRAM	-	chr12	12908243	12913411	GPRC5A|ENST00000648791.1	+	12908243,12912083,12912446	12909171,12912300,12913411	0.515803
upper_lobe_of_left_lung_male_adult_37_years	chr2	143070964	143071000	143070964	+	RAMPAGE_only	43	44	67	3.922114	4.644117	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143091361	143238352	ARHGAP15|ENST00000409869.5	+	143091361,143092156,143155476,143202133,143216383,143228580,143235945	143091422,143092258,143155655,143202202,143216445,143228668,143238352	0.716418
upper_lobe_of_left_lung_male_adult_37_years	chr1	89272838	89272883	89272859	-	High_confidence	58	60	427	24.996160	6.081478	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.974239
upper_lobe_of_left_lung_male_adult_37_years	chr18	47920114	47920115	47920114	-	RAMPAGE_only	4	4	7	0.409773	2.521641	chr18	47919993	47920302	LTR|ERVL-MaLR|MLT1A0	-	chr18	47870474	47923642	SMAD2|ENST00000585978.1	-	47870474,47896520,47920071,47922546,47923565	47870564,47896809,47920169,47922655,47923642	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr3	121788297	121788317	121788297	-	RAMPAGE_only	5	5	11	0.643929	2.846439	chr3	121788145	121788280	SINE|MIR|MIRc	-	chr3	121769993	121835034	IQCB1|ENST00000349820.10	-	121769993,121772556,121781742,121788283,121790072,121807343,121808915,121826050,121828469,121828860,121834390,121834965	121770574,121772713,121781874,121788432,121790215,121807443,121809009,121826180,121828632,121828972,121834479,121835034	0.909091
upper_lobe_of_left_lung_male_adult_37_years	chr19	20750334	20750382	20750354	-	RAMPAGE_only	8	8	50	2.926951	4.969274	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746922	20755250	AC010329.1|ENST00000593903.1	-	20746922	20755250	0.940000
upper_lobe_of_left_lung_male_adult_37_years	chr7	102973265	102973266	102973265	-	High_confidence	10	10	14	0.819546	3.467720	chr7	102973209	102973616	LTR|ERV1|MER48	+	chr7	102883571	102973219	FBXL13|ENST00000477915.5	-	102883571,102884213,102913085,102926273,102963532,102968021,102973149	102883685,102884312,102913215,102926374,102963665,102968117,102973219	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr15	38004722	38004745	38004722	+	High_confidence	7	8	26	1.522014	3.433270	chr15	38003252	38004953	LINE|L1|L1M1	-	chr15	38004745	38025018	LINC02345|ENST00000557883.2	+	38004745,38020191,38024680	38004832,38020532,38025018	0.884615
upper_lobe_of_left_lung_male_adult_37_years	chr1	1655378	1655474	1655409	-	RAMPAGE_only	12	12	35	2.048866	4.594672	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.800000
upper_lobe_of_left_lung_male_adult_37_years	chr9	42231464	42231470	42231469	+	High_confidence	8	8	19	1.112241	3.176110	chr9	42231339	42231694	LTR|ERV1|LTR1A2	+	chr9	42231810	42354454	AL445584.2|ENST00000614030.1	+	42231810,42323905,42343853,42354071	42231836,42324040,42343925,42354454	0.526316
upper_lobe_of_left_lung_male_adult_37_years	chr1	196404228	196404273	196404228	-	High_confidence	84	85	368	21.542358	5.160734	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225795	196404339	STRG.5738.2	-	196225795,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196326716,196331155,196333846,196340340,196342078,196373139,196398562,196404131	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196326889,196331261,196334060,196340570,196342228,196373248,196398671,196404339	0.828804
upper_lobe_of_left_lung_male_adult_37_years	chr11	58578102	58578133	58578132	-	High_confidence	23	29	77	4.507504	5.337148	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58527038	58578166	STRG.51065.3	-	58527038,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58577985	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chrX	16712879	16712890	16712889	-	High_confidence	6	6	11	0.643929	3.121928	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.909091
upper_lobe_of_left_lung_male_adult_37_years	chr17	62520811	62520841	62520840	+	RAMPAGE_only	3	3	7	0.409773	2.807355	chr17	62520890	62521168	SINE|Alu|AluJr	+	chr17	62552304	62576744	TLK2|ENST00000578697.1	+	62552304,62560015,62565000,62573214,62576708	62552397,62560126,62565137,62573367,62576744	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr19	13149289	13149304	13149295	-	High_confidence	3	3	9	0.526851	2.750000	chr19	13149129	13149441	SINE|Alu|AluSx1	+	chr19	13144270	13149839	STX10|ENST00000593126.5	-	13144270,13144576,13144763,13145287,13149028,13149498,13149727	13144403,13144671,13144870,13145395,13149091,13149593,13149839	0.777778
upper_lobe_of_left_lung_male_adult_37_years	chr5	50443318	50443324	50443318	-	High_confidence	9	10	18	1.053702	4.058814	chr5	50443247	50443322	SINE|Alu|AluJb	-	chr5	50403255	50443248	EMB|ENST00000506190.1	-	50403255,50405724,50410876,50411196,50428143,50442951,50443189	50403454,50405852,50410965,50411383,50428227,50442984,50443248	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr14	50756863	50756868	50756867	-	RAMPAGE_only	3	3	7	0.409773	2.584963	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr7	104917639	104917660	104917639	-	RAMPAGE_only	2	2	6	0.351234	2.584963	chr7	104917625	104917755	SINE|MIR|MIRc	-	chr7	104833964	104926630	STRG.37396.4	-	104833964,104911915,104915705,104920384,104926452	104896064,104912165,104917980,104920425,104926630	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr4	41359606	41359607	41359606	+	High_confidence	986	1028	1158	67.788181	6.406865	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.715026
upper_lobe_of_left_lung_male_adult_37_years	chr12	110440313	110440320	110440313	-	RAMPAGE_only	17	17	29	1.697631	3.958229	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.896552
upper_lobe_of_left_lung_male_adult_37_years	chr15	93863033	93863082	93863065	+	High_confidence	20	22	67	3.922114	5.544098	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863079	93867712	STRG.65438.1	+	93863079,93865342,93867399	93863216,93865648,93867712	0.671642
upper_lobe_of_left_lung_male_adult_37_years	chrX	20241673	20241674	20241673	-	RAMPAGE_only	6	6	7	0.409773	2.584963	chrX	20241287	20242031	LINE|L1|L1M6	+	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr1	207240108	207240125	207240108	+	High_confidence	4	4	12	0.702468	3.251629	chr1	207240130	207240343	SINE|MIR|MIR	+	chr1	207240121	207309292	AL596218.1|ENST00000634239.1	+	207240121,207244432,207301769,207308466	207240193,207244536,207301907,207309292	0.583333
upper_lobe_of_left_lung_male_adult_37_years	chr12	79542507	79542551	79542550	-	RAMPAGE_only	26	26	42	2.458639	4.737323	chr12	79540300	79543266	LTR|ERV1|HERVH-int	+	chr12	79390173	79543613	STRG.56348.2	-	79390173,79542902	79393925,79543613	0.547619
upper_lobe_of_left_lung_male_adult_37_years	chr6	31186084	31186118	31186117	-	High_confidence	30	31	65	3.805036	5.587527	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31181800	31186491	STRG.29909.6	-	31181800	31186491	0.600000
upper_lobe_of_left_lung_male_adult_37_years	chr6	79631273	79631329	79631302	+	High_confidence	103	104	415	24.293692	6.466967	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.992771
upper_lobe_of_left_lung_male_adult_37_years	chr11	2376160	2376180	2376179	+	High_confidence	3	3	9	0.526851	2.500000	chr11	2376100	2376285	DNA|hAT-Charlie|MER3	-	chr11	2376176	2397419	CD81|NM_001297649.1	+	2376176,2390411,2394094,2394971,2395415,2395868,2396627,2396803	2376357,2390526,2394192,2395046,2395520,2395970,2396714,2397419	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr16	81664303	81664344	81664343	+	RAMPAGE_only	9	9	27	1.580553	3.166813	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.925926
upper_lobe_of_left_lung_male_adult_37_years	chr18	9588114	9588140	9588120	-	RAMPAGE_only	4	4	15	0.878085	3.378783	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9547712	9614505	PPP4R1|ENST00000285124.12	-	9547712,9549196,9550051,9550277,9553321,9557220,9559418,9561979,9562921,9563377,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9595017,9614225,9614477	9547952,9549338,9550186,9550398,9553422,9557382,9559604,9562075,9563046,9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9595102,9614270,9614505	0.933333
upper_lobe_of_left_lung_male_adult_37_years	chr3	188153209	188153225	188153209	+	High_confidence	3	3	7	0.409773	2.584963	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr2	31542004	31542048	31542032	-	RAMPAGE_only	5	5	24	1.404936	3.886842	chr2	31541502	31542215	LINE|L1|L1M1	+	chr2	31524585	31580971	SRD5A2|NM_000348.3	-	31524585,31529306,31531370,31533602,31580619	31526262,31529457,31531472,31533766,31580971	0.958333
upper_lobe_of_left_lung_male_adult_37_years	chr3	45034830	45034841	45034840	+	RAMPAGE_only	12	13	33	1.931788	4.559546	chr3	45034834	45035021	DNA|hAT-Tip100|MER115	-	chr3	45030129	45036073	CLEC3B|NM_001308394.1	+	45030129,45030826,45035523	45030237,45030925,45036073	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr12	109053947	109053957	109053951	-	High_confidence	21	22	68	3.980653	4.761890	chr12	109053889	109054092	SINE|MIR|MIR	+	chr12	109052349	109053952	USP30-AS1|ENST00000478808.2	-	109052349,109053685	109052738,109053952	0.941176
upper_lobe_of_left_lung_male_adult_37_years	chrY	12686516	12686549	12686530	+	RAMPAGE_only	3	4	10	0.585390	2.947703	chrY	12685409	12686624	LTR|ERV1|MER4-int	+	chrY	12701230	12860839	USP9Y|ENST00000338981.7	+	12701230,12708633,12709387,12720588,12722107,12725112,12726574,12735611,12735997,12736410,12738156,12739524,12757191,12758505,12760483,12771067,12773582,12775470,12776648,12778018,12778605,12779525,12786202,12786521,12790406,12791498,12793031,12810178,12810671,12811634,12812829,12816123,12818419,12833687,12837910,12839863,12841009,12842239,12843063,12846332,12846932,12847238,12856339,12856632,12857565,12859278	12702055,12708693,12709543,12720737,12722187,12725225,12726793,12735727,12736249,12736549,12738309,12739629,12757398,12758642,12760617,12771155,12773925,12775566,12776860,12778259,12778755,12779646,12786333,12786800,12790532,12791624,12793201,12810287,12810818,12811781,12813052,12816344,12818610,12833861,12838052,12840614,12841133,12842465,12843193,12846518,12847153,12847327,12856496,12856845,12857661,12860839	0.700000
upper_lobe_of_left_lung_male_adult_37_years	chr12	91179462	91179549	91179462	-	High_confidence	583	593	2780	162.738465	7.280026	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.674101
upper_lobe_of_left_lung_male_adult_37_years	chr9	84368698	84368699	84368698	-	High_confidence	6	6	9	0.526851	2.500000	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.777778
upper_lobe_of_left_lung_male_adult_37_years	chr16	10444435	10444452	10444446	-	RAMPAGE_only	5	5	19	1.112241	3.572431	chr16	10443659	10445502	LTR|ERV1|HERVIP10B3-int	-	chr16	10440089	10498402	STRG.66146.7	-	10440089,10444075	10441844,10498402	0.842105
upper_lobe_of_left_lung_male_adult_37_years	chr7	87040212	87040223	87040222	-	RAMPAGE_only	6	6	24	1.404936	4.262692	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86942080	87059699	STRG.36686.6	-	86942080,86944898,86947726,86964903,87039755,87059324	86942104,86945046,86947922,86965024,87039871,87059699	0.583333
upper_lobe_of_left_lung_male_adult_37_years	chr7	44984361	44984362	44984361	-	RAMPAGE_only	12	12	14	0.819546	3.378783	chr7	44984007	44984385	LTR|ERVL|LTR40b	-	chr7	44983136	44986560	SNHG15|ENST00000584327.5	-	44983136,44983821,44984356,44986020,44986524	44983322,44983957,44984426,44986097,44986560	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr7	104926544	104926641	104926640	-	High_confidence	429	469	1453	85.057190	7.837886	chr7	104926477	104926669	SINE|MIR|MIR	-	chr7	104833964	104926630	STRG.37396.5	-	104833964,104878964,104911915,104920384,104926452	104878900,104896064,104917980,104920425,104926630	0.792154
upper_lobe_of_left_lung_male_adult_37_years	chr10	70425146	70425193	70425190	+	RAMPAGE_only	4	4	33	1.931788	4.066677	chr10	70424911	70425430	LTR|ERVL-MaLR|MLT1F1	-	chr10	70404378	70428618	EIF4EBP2|ENST00000373218.4	+	70404378,70419913,70421715	70404546,70420099,70428618	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr19	571743	571756	571743	-	High_confidence	1	1	8	0.468312	2.807355	chr19	571640	571898	LTR|ERV1|LTR10B2	-	chr19	567209	571745	AC009005.1|ENST00000589457.2	-	567209,571439	567624,571745	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr11	120120879	120120900	120120890	-	High_confidence	3	3	10	0.585390	2.725481	chr11	120120810	120120894	DNA|hAT-Blackjack|MER94	-	chr11	120115363	120120900	TRIM29|ENST00000526881.1	-	120115363,120118222,120120572,120120758	120115414,120118321,120120665,120120900	0.700000
upper_lobe_of_left_lung_male_adult_37_years	chr17	76551126	76551129	76551126	-	High_confidence	15	15	23	1.346397	3.827910	chr17	76550828	76551081	SINE|MIR|MIRb	-	chr17	76528533	76551175	CYGB|ENST00000589145.1	-	76528533,76530978,76531459,76550861	76528611,76531142,76531691,76551175	0.956522
upper_lobe_of_left_lung_male_adult_37_years	chr2	182030773	182030784	182030783	+	High_confidence	6	6	12	0.702468	3.277613	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.583333
upper_lobe_of_left_lung_male_adult_37_years	chr17	32863045	32863048	32863047	-	High_confidence	5	12	13	0.761007	2.584963	chr17	32862868	32863012	DNA|hAT-Charlie|MER5B	-	chr17	32492608	32863043	MYO1D|ENST00000394649.8	-	32492608,32605086,32638721,32653842,32654476,32659114,32711987,32721022,32738252,32745210,32748935,32755491,32760289,32760481,32764877,32767635,32771124,32772788,32775863,32778479,32780575,32792463,32794192,32862903	32494915,32605241,32638835,32653947,32654621,32659338,32712195,32721189,32738385,32745285,32749006,32755662,32760404,32760627,32765081,32767752,32771220,32772842,32776029,32778573,32780784,32792591,32794299,32863043	0.923077
upper_lobe_of_left_lung_male_adult_37_years	chr17	1648258	1648277	1648266	-	High_confidence	4	4	12	0.702468	3.277613	chr17	1648093	1648307	LINE|L2|L2b	+	chr17	1646192	1648846	RILP|ENST00000570858.5	-	1646192,1646905,1647834,1648349	1646619,1646989,1647957,1648846	0.666667
upper_lobe_of_left_lung_male_adult_37_years	chr13	106562018	106562045	106562018	-	High_confidence	6	6	11	0.643929	2.646439	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.909091
upper_lobe_of_left_lung_male_adult_37_years	chr2	207662375	207662376	207662375	+	High_confidence	19	19	22	1.287858	3.499228	chr2	207662277	207662604	LTR|ERVL-MaLR|MLT1A1	+	chr2	207662374	207667024	LINC01857|ENST00000429730.1	+	207662374,207666680	207662522,207667024	0.954545
upper_lobe_of_left_lung_male_adult_37_years	chr16	10444160	10444170	10444160	-	RAMPAGE_only	3	3	13	0.761007	3.251629	chr16	10443659	10445502	LTR|ERV1|HERVIP10B3-int	-	chr16	10440089	10498402	STRG.66146.8	-	10440089,10444317	10444200,10498402	0.923077
upper_lobe_of_left_lung_male_adult_37_years	chr5	150125473	150125484	150125473	-	RAMPAGE_only	3	3	6	0.351234	2.584963	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr10	102449836	102449839	102449836	+	High_confidence	23	23	38	2.224483	4.496899	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.736842
upper_lobe_of_left_lung_male_adult_37_years	chrX	53546444	53546445	53546444	-	RAMPAGE_only	5	5	8	0.468312	2.521641	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.875000
upper_lobe_of_left_lung_male_adult_37_years	chr21	45562968	45563027	45562968	-	High_confidence	15	16	71	4.156270	5.524979	chr21	45562422	45564060	LINE|L1|L1MC3	+	chr21	45513775	45563186	STRG.78243.3	-	45513775,45525816,45530769,45531388,45537770,45562741	45516140,45525958,45530971,45532148,45538008,45563186	0.676056
upper_lobe_of_left_lung_male_adult_37_years	chr21	29077486	29077517	29077486	+	High_confidence	14	14	31	1.814709	4.438067	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.612903
upper_lobe_of_left_lung_male_adult_37_years	chr1	189149624	189149656	189149646	+	High_confidence	5	5	26	1.522014	3.690260	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	189149634	189307878	STRG.5646.1	+	189149634,189150541,189307728	189149876,189150759,189307878	0.846154
upper_lobe_of_left_lung_male_adult_37_years	chr1	184590798	184590808	184590807	+	RAMPAGE_only	4	5	13	0.761007	2.931209	chr1	184590844	184591183	DNA|TcMar-Tigger|MER2B	+	chr1	184612844	184629020	STRG.5573.4	+	184612844,184622359	184622294,184629020	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr9	92536703	92536718	92536703	-	High_confidence	6	7	14	0.819546	2.719295	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.928571
upper_lobe_of_left_lung_male_adult_37_years	chr4	40200323	40200349	40200343	+	High_confidence	4	4	14	0.819546	3.521641	chr4	40200353	40200436	DNA|hAT-Charlie|MER5B	+	chr4	40200343	40243405	RHOH|ENST00000511121.5	+	40200343,40242713,40243177	40200565,40242834,40243405	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr10	133006627	133006689	133006688	-	High_confidence	8	8	39	2.283022	4.887716	chr10	133006524	133006726	LTR|ERVL-MaLR|MLT1B	-	chr10	132947027	133006676	STRG.49636.1	-	132947027,132993048,133006257	132947080,132993153,133006676	0.769231
upper_lobe_of_left_lung_male_adult_37_years	chrX	72305913	72305914	72305913	-	High_confidence	21	27	27	1.580553	3.554652	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr13	112509194	112509196	112509195	-	RAMPAGE_only	5	8	9	0.526851	2.500000	chr13	112509095	112509402	LINE|L2|L2c	+	chr13	112485843	112588135	STRG.59872.2	-	112485843,112489580,112499044,112504031,112504625,112516439,112518974,112519885,112522319,112526941,112527373,112545698,112548107,112554056,112556051,112558195,112559321,112565110,112569151,112587904	112486151,112489697,112499185,112504163,112504714,112516575,112519043,112520021,112522509,112527050,112527484,112547752,112548176,112555005,112556224,112558413,112559399,112565178,112569259,112588135	0.777778
upper_lobe_of_left_lung_male_adult_37_years	chr10	67765094	67765099	67765094	+	High_confidence	5	5	10	0.585390	2.721928	chr10	67765094	67765398	SINE|Alu|AluYi6	+	chr10	67765103	67765382	STRG.47535.1	+	67765103	67765382	0.800000
upper_lobe_of_left_lung_male_adult_37_years	chr11	12249193	12249223	12249214	+	RAMPAGE_only	7	8	33	1.931788	3.945465	chr11	12249186	12249364	SINE|MIR|MIRb	+	chr11	12252531	12263787	MICAL2|ENST00000525618.5	+	12252531,12256784,12258467,12259794,12262479,12263559	12255750,12256971,12258556,12259897,12262635,12263787	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr12	50768052	50768078	50768052	+	RAMPAGE_only	8	10	22	1.287858	3.421928	chr12	50767871	50768172	SINE|Alu|AluSx	-	chr12	50764508	50814368	ATF1|ENST00000552487.1	+	50764508,50780139,50795908,50809455,50814009,50814279	50764647,50780238,50796009,50809589,50814192,50814368	0.863636
upper_lobe_of_left_lung_male_adult_37_years	chr10	19749770	19749783	19749778	+	RAMPAGE_only	34	37	86	5.034355	5.640896	chr10	19749477	19750269	LTR|ERVL|MER54B	+	chr10	19816238	20289856	PLXDC2|ENST00000377252.4	+	19816238,20001774,20046868,20068169,20143294,20147783,20164467,20176998,20177327,20211668,20217425,20219063,20245344,20279702	19817191,20001986,20047015,20068239,20143417,20147902,20164567,20177094,20177409,20211729,20217576,20219102,20245505,20289856	0.790698
upper_lobe_of_left_lung_male_adult_37_years	chr1	160951451	160951474	160951451	-	High_confidence	13	16	63	3.687958	5.290980	chr1	160951407	160951550	LTR|ERVL|LTR40b	+	chr1	160943958	160951474	STRG.4899.1	-	160943958,160947928,160950045,160950552,160951042	160945292,160948032,160950166,160950711,160951474	0.984127
upper_lobe_of_left_lung_male_adult_37_years	chrX	94700682	94700719	94700706	+	High_confidence	2	2	9	0.526851	2.750000	chrX	94700514	94701006	LTR|ERV1|HERVH-int	-	chrX	94700923	94946257	STRG.81397.1	+	94700923,94746874,94915658	94702166,94746970,94946257	0.777778
upper_lobe_of_left_lung_male_adult_37_years	chr4	102431241	102431248	102431247	-	High_confidence	3	3	9	0.526851	2.750000	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr11	47420632	47420633	47420632	-	RAMPAGE_only	8	8	8	0.468312	2.500000	chr11	47420478	47420646	SINE|MIR|MIRb	+	chr11	47418768	47426266	PSMC3|ENST00000602866.5	-	47418768,47419115,47420263,47420630,47422573,47422829,47424045,47424428,47424606,47425120,47425866,47426204	47418945,47419197,47420409,47420727,47422722,47422973,47424183,47424491,47424711,47425246,47425950,47426266	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr5	77088097	77088109	77088108	+	High_confidence	8	11	27	1.580553	4.282484	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.592593
upper_lobe_of_left_lung_male_adult_37_years	chr3	28291847	28291848	28291847	+	High_confidence	28	29	29	1.697631	4.116265	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.827586
upper_lobe_of_left_lung_male_adult_37_years	chr19	34860565	34860576	34860565	-	High_confidence	3	3	7	0.409773	2.584963	chr19	34860177	34866213	LINE|L1|L1PA4	+	chr19	34849277	34860290	AC008555.5|ENST00000603718.1	-	34849277,34850668,34860173	34849549,34850794,34860290	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr17	82081606	82081809	82081606	-	RAMPAGE_only	23	23	106	6.205136	5.487111	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	0.990566
upper_lobe_of_left_lung_male_adult_37_years	chr6	3720076	3720077	3720076	-	RAMPAGE_only	36	36	43	2.517178	4.175696	chr6	3719558	3721329	LTR|ERV1|LTR12C	-	chr6	3719535	3721227	STRG.28863.1	-	3719535	3721227	0.976744
upper_lobe_of_left_lung_male_adult_37_years	chr12	79543367	79543411	79543367	-	High_confidence	188	192	644	37.699126	7.252869	chr12	79543260	79543408	LTR|ERV1|HERVH-int	+	chr12	79390173	79543613	STRG.56348.2	-	79390173,79542902	79393925,79543613	0.914596
upper_lobe_of_left_lung_male_adult_37_years	chr1	20685271	20685320	20685297	-	High_confidence	4	5	13	0.761007	3.188722	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.769231
upper_lobe_of_left_lung_male_adult_37_years	chr7	1455730	1455750	1455739	-	RAMPAGE_only	2	2	12	0.702468	3.277613	chr7	1455719	1455815	LINE|CR1|L3b	+	chr7	1445070	1459502	STRG.34057.5	-	1445070,1446712,1447574,1448619,1459183	1445428,1446828,1447765,1450288,1459502	0.833333
upper_lobe_of_left_lung_male_adult_37_years	chr9	89479889	89479890	89479889	-	High_confidence	90	90	92	5.385589	4.005516	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89361978	89479890	SEMA4D|ENST00000429836.5	-	89361978,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89455953,89479890	0.967391
upper_lobe_of_left_lung_male_adult_37_years	chr16	29145568	29145569	29145568	-	High_confidence	53	53	65	3.805036	4.972769	chr16	29145389	29145751	LTR|ERVL-MaLR|THE1C	-	chr16	29133407	29145608	STRG.66717.3	-	29133407,29139423,29145471	29134541,29142410,29145608	0.969231
upper_lobe_of_left_lung_male_adult_37_years	chr3	197299316	197299320	197299316	-	High_confidence	4	4	9	0.526851	3.000000	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197043630	197299300	DLG1|ENST00000419354.5	-	197043630,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299300	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr3	53168725	53168746	53168725	+	RAMPAGE_only	2	2	11	0.643929	2.921928	chr3	53168641	53169049	LINE|L2|L2b	-	chr3	53165128	53184973	PRKCD|ENST00000464818.1	+	53165128,53178403,53179576,53181206,53181443,53181700,53184873	53165215,53178537,53179776,53181267,53181606,53181732,53184973	0.909091
upper_lobe_of_left_lung_male_adult_37_years	chr9	20658342	20658349	20658348	+	High_confidence	15	22	38	2.224483	4.279551	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658351	20770112	STRG.43027.6	+	20658351,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770112	0.947368
upper_lobe_of_left_lung_male_adult_37_years	chr6	131325701	131325760	131325740	+	High_confidence	9	18	66	3.863575	4.633079	chr6	131323748	131326796	LTR|ERV1|HERVH-int	+	chr6	131325718	131326597	STRG.32768.1	+	131325718	131326597	0.818182
upper_lobe_of_left_lung_male_adult_37_years	chr13	31814664	31814687	31814686	-	High_confidence	16	16	53	3.102568	5.093802	chr13	31814066	31816716	LINE|L1|L1M4c	+	chr13	31797086	31814714	STRG.58035.1	-	31797086,31814109,31814496	31797492,31814197,31814714	0.924528
upper_lobe_of_left_lung_male_adult_37_years	chr8	22162154	22162233	22162165	+	High_confidence	6	6	35	2.048866	4.286147	chr8	22162061	22162331	LINE|L2|L2c	-	chr8	22161807	22163998	SFTPC|ENST00000523296.1	+	22161807,22163079,22163435,22163900	22161870,22163202,22163546,22163998	0.800000
upper_lobe_of_left_lung_male_adult_37_years	chr2	113117965	113117971	113117970	+	High_confidence	5	5	11	0.643929	2.594907	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr19	41759290	41759352	41759290	-	RAMPAGE_only	4	4	27	1.580553	3.303465	chr19	41759100	41759255	LTR|ERVL|LTR101_Mam	-	chr19	41756020	41758233	STRG.74279.1	-	41756020,41758210	41758081,41758233	0.925926
upper_lobe_of_left_lung_male_adult_37_years	chr19	13037399	13037412	13037399	+	RAMPAGE_only	2	2	7	0.409773	2.521641	chr19	13037335	13037620	LINE|CR1|L3b	+	chr19	13024938	13094770	NFIX|ENST00000587260.1	+	13024938,13073046,13073421,13073905,13075534,13078612,13081679,13090298,13094634	13025552,13073109,13073496,13074026,13075671,13078735,13081855,13090390,13094770	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr12	126772318	126772337	126772336	-	High_confidence	6	6	11	0.643929	3.121928	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126748055	126772356	LINC00944|ENST00000542248.5	-	126748055,126760931,126763414,126772078	126748127,126761045,126763498,126772356	0.727273
upper_lobe_of_left_lung_male_adult_37_years	chr11	7905910	7905971	7905925	-	High_confidence	15	15	35	2.048866	4.343806	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.771429
upper_lobe_of_left_lung_male_adult_37_years	chr8	133255232	133255263	133255262	-	High_confidence	4	4	9	0.526851	3.169925	chr8	133255180	133255391	SINE|MIR|MIRb	+	chr8	133246626	133254882	NDRG1|ENST00000521664.1	-	133246626,133247874,133248714,133250439,133254538	133246663,133247926,133248771,133250543,133254882	0.666667
upper_lobe_of_left_lung_male_adult_37_years	chr17	4143196	4143215	4143199	+	High_confidence	46	47	109	6.380753	5.266533	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.972477
upper_lobe_of_left_lung_male_adult_37_years	chr20	3795750	3795789	3795750	+	High_confidence	16	17	66	3.863575	4.851543	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_004358.4	+	3795738,3797663,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.939394
upper_lobe_of_left_lung_male_adult_37_years	chr13	110057239	110057275	110057241	-	High_confidence	4	8	14	0.819546	3.378783	chr13	110056667	110057319	LTR|ERV1|LTR58	+	chr13	110036196	110057286	AL355974.2|ENST00000617298.1	-	110036196,110057125	110036971,110057286	0.785714
upper_lobe_of_left_lung_male_adult_37_years	chr5	126814083	126814142	126814099	+	RAMPAGE_only	2	2	17	0.995163	3.690117	chr5	126813882	126814194	SINE|Alu|AluSp	-	chr5	126811712	126821081	LMNB1|ENST00000494185.1	+	126811712,126818921,126820909	126811898,126819142,126821081	0.823529
upper_lobe_of_left_lung_male_adult_37_years	chr12	93773408	93773412	93773408	+	RAMPAGE_only	6	7	14	0.819546	2.753434	chr12	93773228	93773564	LTR|ERVL-MaLR|THE1B	+	chr12	93815407	93850667	CRADD|ENST00000609189.1	+	93815407,93849969	93815481,93850667	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr13	60410080	60410081	60410080	+	High_confidence	26	29	29	1.697631	3.810928	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60410099	60485899	STRG.58855.9	+	60410099,60439687,60444682,60460379,60467237,60483774,60485798	60410164,60439772,60444748,60460540,60467379,60483846,60485899	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr4	152412497	152412529	152412528	-	High_confidence	7	7	15	0.878085	3.589898	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr2	29114158	29114219	29114218	+	High_confidence	27	27	139	8.136923	5.593302	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.877698
upper_lobe_of_left_lung_male_adult_37_years	chr1	21876237	21876248	21876237	-	RAMPAGE_only	4	4	17	0.995163	3.734522	chr1	21876092	21876241	LINE|L2|L2c	+	chr1	21822244	21879074	STRG.681.2	-	21822244,21822744,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993	21822676,21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879074	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chrX	20204034	20204067	20204049	-	RAMPAGE_only	5	5	19	1.112241	4.037401	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154834	20218959	RPS6KA3|ENST00000457145.6	-	20154834,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20218799	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20218959	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr2	201122588	201122590	201122589	+	High_confidence	44	51	74	4.331887	5.053134	chr2	201122549	201122826	LINE|L2|L2c	-	chr2	201122476	201130053	CFLAR|ENST00000425030.1	+	201122476,201129728	201122747,201130053	0.770270
upper_lobe_of_left_lung_male_adult_37_years	chr7	111940135	111940151	111940135	-	RAMPAGE_only	2	2	10	0.585390	2.947703	chr7	111940063	111940135	LINE|RTE-BovB|MamRTE1	-	chr7	111728273	112004131	DOCK4|ENST00000445943.5	-	111728273,111732225,111735053,111736916,111739133,111739395,111741093,111741539,111742012,111746333,111747266,111755514,111758623,111760180,111765117,111767031,111769528,111778275,111782863,111783856,111784096,111788661,111790456,111808820,111809300,111811873,111822361,111834587,111840762,111844762,111846998,111863371,111867983,111869573,111871989,111872268,111872466,111877029,111895611,111900373,111901676,111915778,111935539,111940109,111944810,111945716,111977131,111984305,111989014,111994134,111998447,112000493,112004047	111728720,111732287,111735167,111736989,111739243,111739477,111741214,111741661,111742132,111746417,111747443,111755601,111758790,111760322,111765222,111767118,111769677,111778369,111782924,111783952,111784123,111788747,111790605,111808879,111809401,111811949,111822456,111834686,111840870,111844897,111847126,111863564,111868154,111869655,111872090,111872352,111872564,111877186,111895718,111900536,111901801,111915904,111935628,111940242,111944871,111945798,111977283,111984390,111989163,111994231,111998503,112000534,112004131	0.700000
upper_lobe_of_left_lung_male_adult_37_years	chr22	19935618	19935619	19935618	+	High_confidence	15	18	18	1.053702	3.683542	chr22	19934859	19935775	LTR|ERVK|MER11A	+	chr22	19935627	19936272	STRG.78383.1	+	19935627	19936272	0.722222
upper_lobe_of_left_lung_male_adult_37_years	chr9	125337360	125337392	125337391	+	RAMPAGE_only	5	5	9	0.526851	3.169925	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125302209	125363025	STRG.45513.8	+	125302209,125305062,125307412,125307690,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176,125342218,125346818,125350294,125350712,125354653,125355643,125359419,125360527,125362605	125302826,125305149,125307547,125307880,125312612,125321562,125323923,125326589,125330218,125332060,125332629,125337095,125337591,125341264,125342299,125349519,125350404,125350872,125354841,125355857,125359492,125360725,125363025	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr15	89999221	89999223	89999222	+	High_confidence	10	15	20	1.170780	4.037401	chr15	89998992	89999393	LINE|L2|L2c	+	chr15	89999236	90082200	STRG.65357.2	+	89999236,90067109,90073070,90074115,90079659	89999360,90068595,90073262,90074290,90082200	0.850000
upper_lobe_of_left_lung_male_adult_37_years	chr10	10819644	10819650	10819644	-	RAMPAGE_only	3	3	8	0.468312	2.500000	chr10	10819425	10819692	LINE|L2|L2	+	chr10	10784437	10794980	SFTA1P|ENST00000434919.6	-	10784437,10786644,10794838	10784669,10786735,10794980	0.625000
upper_lobe_of_left_lung_male_adult_37_years	chr7	154928503	154928504	154928503	+	High_confidence	20	20	27	1.580553	4.053661	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr8	65981105	65981120	65981105	+	RAMPAGE_only	4	4	10	0.585390	2.921928	chr8	65980910	65981286	LTR|ERVL-MaLR|THE1B	+	chr8	65979199	66100533	STRG.40228.1	+	65979199,66043487,66051530,66076659,66080376,66099936	65979293,66043611,66051666,66076873,66080548,66100533	0.900000
upper_lobe_of_left_lung_male_adult_37_years	chr15	92914973	92914974	92914973	+	High_confidence	6	6	8	0.468312	3.000000	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr19	20423688	20423704	20423703	-	RAMPAGE_only	7	9	21	1.229319	3.075580	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.904762
upper_lobe_of_left_lung_male_adult_37_years	chr8	11864387	11864411	11864387	-	RAMPAGE_only	2	2	7	0.409773	2.521641	chr8	11864196	11864505	SINE|Alu|AluJb	+	chr8	11849060	11862468	CTSB|ENST00000527243.5	-	11849060,11850865,11852609,11853328,11862344	11849164,11850980,11852695,11853479,11862468	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr14	103931833	103931834	103931833	+	RAMPAGE_only	6	6	9	0.526851	2.725481	chr14	103931646	103932201	LTR|ERVL-MaLR|MLT1E2	+	chr14	103928479	104052667	TDRD9|NM_153046.2	+	103928479,103955663,103963078,103965332,103966708,103970540,103975388,103986216,103991159,103994331,103994518,103995749,103998623,104004237,104005273,104006388,104006645,104006781,104007159,104008412,104014724,104015980,104018091,104022156,104024568,104025563,104026046,104026678,104031107,104032016,104033959,104034959,104040195,104042068,104049607,104051980	103928724,103955770,103963176,103965554,103966831,103970621,103975553,103986320,103991224,103994386,103994603,103995807,103998728,104004335,104005405,104006554,104006709,104006845,104007204,104008466,104014841,104016088,104018192,104022330,104024680,104025776,104026136,104026939,104031263,104032087,104034069,104035056,104040334,104042187,104049680,104052667	0.777778
upper_lobe_of_left_lung_male_adult_37_years	chr5	38881699	38881732	38881731	+	RAMPAGE_only	3	5	9	0.526851	2.725481	chr5	38881676	38881753	SINE|tRNA-Deu|AmnSINE2	+	chr5	38845998	38886739	OSMR|NM_001323504.1	+	38845998,38869031,38876200,38881592,38883826,38885348,38886038	38846387,38869117,38876373,38881764,38884111,38885484,38886739	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chrX	18650636	18650637	18650636	-	High_confidence	33	33	45	2.634256	5.075078	chrX	18650611	18650761	DNA|hAT-Charlie|MER5B	-	chrX	18638989	18650655	STRG.79929.1	-	18638989,18644429,18647190,18650295	18642156,18644625,18647332,18650655	0.777778
upper_lobe_of_left_lung_male_adult_37_years	chr21	42607606	42607607	42607606	-	RAMPAGE_only	17	21	21	1.229319	3.681881	chr21	42607449	42607803	LTR|ERVL|LTR47A	-	chr21	42599279	42615058	LINC01671|ENST00000419628.1	-	42599279,42614852	42600848,42615058	0.761905
upper_lobe_of_left_lung_male_adult_37_years	chr15	90467513	90467527	90467513	+	RAMPAGE_only	3	3	7	0.409773	2.521641	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chrX	109760768	109760826	109760768	-	RAMPAGE_only	123	123	320	18.732485	6.668079	chrX	109760494	109761733	LINE|L1|L1MCa	+	chrX	109641329	109733403	ACSL4|NM_001318509.1	-	109641329,109659353,109661530,109663210,109665419,109668100,109669033,109674401,109677987,109678264,109680997,109681265,109682718,109683135,109696143,109733138	109644186,109659511,109661645,109663402,109665494,109668273,109669173,109674473,109678111,109678415,109681136,109681375,109682896,109683666,109696196,109733403	0.678125
upper_lobe_of_left_lung_male_adult_37_years	chr6	44126632	44126633	44126632	+	High_confidence	58	58	63	3.687958	4.577157	chr6	44126578	44126686	LINE|CR1|X7A_LINE	-	chr6	44126641	44148334	STRG.30523.2	+	44126641,44126920,44127722,44132216,44134560,44135016,44135327,44136348,44138479,44139466,44139707,44140251,44141027,44146846,44147376,44148251	44126715,44127141,44127866,44132289,44134743,44135096,44135366,44136439,44138517,44139609,44139759,44140360,44141098,44146927,44147500,44148334	0.952381
upper_lobe_of_left_lung_male_adult_37_years	chr20	45762231	45762243	45762231	+	High_confidence	4	4	12	0.702468	3.277613	chr20	45759753	45763699	LTR|ERV1|HERVH-int	+	chr20	45762017	45767513	STRG.76629.1	+	45762017,45765157	45762327,45767513	0.916667
upper_lobe_of_left_lung_male_adult_37_years	chr3	9973632	9973648	9973638	-	RAMPAGE_only	3	3	12	0.702468	3.459432	chr3	9973495	9973590	SINE|Alu|FLAM_C	-	chr3	9962536	9987120	EMC3|ENST00000245046.6	-	9962536,9969718,9970581,9973627,9974383,9976956,9977388,9986506	9964197,9969801,9970661,9973709,9974488,9977050,9977446,9987120	0.916667
upper_lobe_of_left_lung_male_adult_37_years	chr19	50362756	50362837	50362801	-	High_confidence	13	14	73	4.273348	5.638254	chr19	50362729	50362815	SINE|Alu|AluJr	-	chr19	50361908	50362782	NAPSA|ENST00000597378.1	-	50361908,50362623	50362313,50362782	0.643836
upper_lobe_of_left_lung_male_adult_37_years	chr4	142474407	142474408	142474407	-	High_confidence	9	10	14	0.819546	3.521641	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr16	10451193	10451700	10451193	-	RAMPAGE_only	16	16	313	18.322712	6.341887	chr16	10447870	10451776	LINE|L1|L1P2	-	chr16	10440089	10498402	STRG.66146.7	-	10440089,10444075	10441844,10498402	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr3	120719640	120719681	120719680	-	RAMPAGE_only	4	4	10	0.585390	2.921928	chr3	120719120	120721943	LINE|L1|L1PA4	+	chr3	120694152	120710546	RABL3|ENST00000468192.1	-	120694152,120698422,120705999,120709779,120710342	120694224,120698573,120706114,120709909,120710546	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr15	45645874	45645928	45645895	+	High_confidence	6	7	42	2.458639	4.704994	chr15	45645871	45646155	DNA|hAT-Tip100|Arthur1C	+	chr15	45645880	45669946	SQOR|ENST00000561493.5	+	45645880,45658906,45661954,45669927	45646008,45659157,45662125,45669946	0.904762
upper_lobe_of_left_lung_male_adult_37_years	chrY	3002641	3002652	3002651	-	High_confidence	7	7	14	0.819546	3.334679	chrY	3002436	3002992	LTR|ERV1|LTR4	+	chrY	2966843	3002626	ZFY-AS1|ENST00000417305.1	-	2966843,2981837,3002312	2966939,2981927,3002626	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr6	131325816	131325866	131325835	-	High_confidence	4	4	21	1.229319	3.821928	chr6	131323748	131326796	LTR|ERV1|HERVH-int	+	chr6	131324675	131326312	STRG.32765.2	-	131324675	131326312	0.619048
upper_lobe_of_left_lung_male_adult_37_years	chr7	54759973	54759974	54759973	-	High_confidence	7	7	7	0.409773	2.521641	chr7	54759838	54759956	SINE|Alu|AluSg7	-	chr7	54752252	54759974	SEC61G|ENST00000415949.5	-	54752252,54755778,54757494,54759157,54759790	54752420,54755881,54757594,54759334,54759974	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr3	169812903	169812904	169812903	-	High_confidence	8	8	12	0.702468	3.095795	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	0.916667
upper_lobe_of_left_lung_male_adult_37_years	chr5	154287469	154287470	154287469	+	High_confidence	702	722	888	51.982646	5.622120	chr5	154287254	154287737	LINE|L2|L2c	+	chr5	154287469	154376367	GALNT10|ENST00000519571.1	+	154287469,154294815,154297940,154329571,154376276	154287514,154294918,154298079,154329738,154376367	0.924550
upper_lobe_of_left_lung_male_adult_37_years	chr2	229232042	229232054	229232053	-	High_confidence	15	15	27	1.580553	4.532665	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.925926
upper_lobe_of_left_lung_male_adult_37_years	chr17	61955400	61955432	61955400	-	RAMPAGE_only	2	2	8	0.468312	2.750000	chr17	61954857	61955361	LTR|ERVL-MaLR|MLT1D	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr14	28613643	28613646	28613645	-	High_confidence	17	23	32	1.873249	3.307752	chr14	28613407	28613767	LTR|ERVL-MaLR|MLT1I	-	chr14	28592222	28613623	LINC02300|ENST00000549742.1	-	28592222,28612321,28613458	28592565,28612478,28613623	0.937500
upper_lobe_of_left_lung_male_adult_37_years	chr13	43921472	43921473	43921472	+	RAMPAGE_only	10	10	14	0.819546	3.521641	chr13	43921366	43921716	LINE|L2|L2c	-	chr13	43908713	44026841	LINC00284|ENST00000585327.5	+	43908713,43942422,44022474,44026822	43908776,43942613,44022668,44026841	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr2	215848877	215848878	215848877	-	RAMPAGE_only	16	16	18	1.053702	3.616875	chr2	215848652	215849119	LTR|ERVL|MER70B	-	chr2	215743819	215843722	LINC00607|ENST00000417922.1	-	215743819,215747303,215750242,215843325,215843623	215743914,215747394,215750417,215843423,215843722	0.555556
upper_lobe_of_left_lung_male_adult_37_years	chr19	13149359	13149381	13149380	-	High_confidence	4	5	9	0.526851	2.750000	chr19	13149129	13149441	SINE|Alu|AluSx1	+	chr19	13144061	13149885	STX10|ENST00000587318.5	-	13144061,13144576,13144763,13145287,13149028,13149498,13149727	13144139,13144671,13144870,13145395,13149091,13149593,13149885	0.666667
upper_lobe_of_left_lung_male_adult_37_years	chr6	117442523	117442524	117442523	-	RAMPAGE_only	31	31	35	2.048866	4.433154	chr6	117442358	117442707	LTR|ERVL-MaLR|THE1B	-	chr6	117288299	117425855	ROS1|ENST00000368507.7	-	117288299,117300973,117308793,117310080,117311019,117317142,117318187,117319867,117321258,117324331,117326223,117329328,117337171,117341134,117341399,117342399,117344059,117352989,117356628,117357803,117359808,117360341,117362602,117365059,117365580,117366075,117379058,117383316,117385682,117386888,117387779,117389349,117393223,117394161,117394615,117396187,117396914,117403138,117404279,117409581,117414518,117416257,117418461,117425533	117288802,117301137,117308928,117310281,117311117,117317272,117318252,117320030,117321394,117324415,117326414,117329446,117337340,117341311,117341632,117342544,117344262,117353166,117356915,117358009,117360011,117360405,117362865,117365204,117365741,117366290,117379159,117383508,117385861,117386999,117387992,117389846,117393321,117394346,117394738,117396264,117397116,117403277,117404428,117409642,117414545,117416317,117418506,117425855	0.914286
upper_lobe_of_left_lung_male_adult_37_years	chr14	75025217	75025226	75025217	-	RAMPAGE_only	3	3	11	0.643929	2.846439	chr14	75025064	75026121	LINE|L2|L2c	+	chr14	75015486	75023018	MLH3|ENST00000554697.5	-	75015486,75017007,75018828,75022813,75022994	75015862,75017201,75018980,75022892,75023018	0.636364
upper_lobe_of_left_lung_male_adult_37_years	chr2	215831528	215831554	215831528	-	High_confidence	1	2	8	0.468312	2.807355	chr2	215831449	215831546	DNA|hAT-Charlie|Charlie10b	-	chr2	215641767	215831590	LINC00607|ENST00000451392.5	-	215641767,215743813,215747303,215750242,215831428	215641819,215743914,215747394,215750417,215831590	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr15	55514003	55514014	55514013	-	RAMPAGE_only	11	11	19	1.112241	3.787144	chr15	55513405	55516274	LTR|ERV1|HERVE_a-int	-	chr15	55417754	55508234	DYX1C1|NM_001033560.1	-	55417754,55434904,55439471,55450221,55466929,55491122,55497711,55498206,55508121	55418133,55435058,55439581,55450367,55467161,55491256,55497859,55498584,55508234	0.578947
upper_lobe_of_left_lung_male_adult_37_years	chr12	12916733	12917454	12917348	+	RAMPAGE_only	42	42	442	25.874245	6.851088	chr12	12917340	12917450	SINE|MIR|MIR3	-	chr12	12890781	12917937	GPRC5A|ENST00000014914.5	+	12890781,12908242,12912083,12912446	12891664,12909171,12912142,12917937	0.995475
upper_lobe_of_left_lung_male_adult_37_years	chr1	10485003	10485008	10485007	+	RAMPAGE_only	4	4	9	0.526851	3.000000	chr1	10484560	10485090	LTR|ERVL-MaLR|MLT1F2	-	chr1	10474945	10630758	PEX14|NM_004565.2	+	10474945,10495273,10536212,10599237,10618331,10623018,10624339,10627271,10629530	10475002,10495321,10536297,10599366,10618417,10623121,10624437,10627363,10630758	0.555556
upper_lobe_of_left_lung_male_adult_37_years	chr20	50172542	50172590	50172566	+	High_confidence	3	3	18	1.053702	3.852169	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.555556
upper_lobe_of_left_lung_male_adult_37_years	chr8	116648827	116648842	116648841	-	RAMPAGE_only	2	2	7	0.409773	2.584963	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr3	160371298	160371299	160371298	-	RAMPAGE_only	14	14	19	1.112241	3.836592	chr3	160371250	160371451	LINE|L2|L2c	+	chr3	160356012	160377454	IFT80|ENST00000484963.5	-	160356012,160357488,160366092,160375811,160377429	160356150,160357578,160366152,160375880,160377454	0.526316
upper_lobe_of_left_lung_male_adult_37_years	chr17	4610599	4610605	4610604	+	High_confidence	7	7	13	0.761007	3.022055	chr17	4610403	4610704	SINE|Alu|AluJb	+	chr17	4610448	4617650	LINC01996|ENST00000573270.1	+	4610448,4616762	4610833,4617650	0.846154
upper_lobe_of_left_lung_male_adult_37_years	chr3	57267745	57267780	57267779	+	RAMPAGE_only	5	5	19	1.112241	3.536887	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.947368
upper_lobe_of_left_lung_male_adult_37_years	chr3	48430182	48430183	48430182	-	High_confidence	6	6	7	0.409773	2.584963	chr3	48430133	48430258	SINE|MIR|MIRb	+	chr3	48403853	48430051	PLXNB1|ENST00000296440.10	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48430007	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48430051	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr16	15006395	15006455	15006403	+	RAMPAGE_only	4	5	19	1.112241	3.576618	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.631579
upper_lobe_of_left_lung_male_adult_37_years	chr7	11194720	11194745	11194720	+	RAMPAGE_only	2	2	9	0.526851	2.725481	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11193365	11379366	AC004160.1|ENST00000428967.5	+	11193365,11197309,11244257,11248292,11379286	11193422,11197444,11244479,11248375,11379366	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr8	90006123	90006124	90006123	+	RAMPAGE_only	6	6	8	0.468312	3.000000	chr8	90005695	90006172	LTR|ERVL-MaLR|MSTB1	-	chr8	90001476	90051999	DECR1|ENST00000522161.5	+	90001476,90005447,90006035,90017123,90018908,90019085,90020908,90036840,90042727,90044848,90051676,90051837	90001561,90005845,90006277,90017326,90018966,90019172,90021056,90036940,90042800,90044995,90051739,90051999	0.625000
upper_lobe_of_left_lung_male_adult_37_years	chr2	11201309	11201392	11201309	-	RAMPAGE_only	5	5	35	2.048866	4.653496	chr2	11201208	11201301	LINE|L2|L2a	-	chr2	11183330	11234670	ROCK2|ENST00000401753.5	-	11183330,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11234203	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11234670	0.971429
upper_lobe_of_left_lung_male_adult_37_years	chr18	3412793	3412797	3412796	+	High_confidence	4	4	10	0.585390	2.947703	chr18	3412812	3413021	SINE|Alu|AluJo	+	chr18	3412203	3418846	TGIF1|ENST00000547233.1	+	3412203,3418142	3412254,3418846	0.600000
upper_lobe_of_left_lung_male_adult_37_years	chr15	30624362	30624365	30624364	+	High_confidence	7	9	12	0.702468	2.550341	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr22	50757126	50757150	50757126	+	High_confidence	2	2	12	0.702468	3.027169	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr11	64226142	64226180	64226142	-	High_confidence	45	48	217	12.702966	6.624715	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64224202	64226148	TRPT1|ENST00000545812.1	-	64224202,64224284,64224542,64224794,64225498,64225785,64226049	64224210,64224341,64224717,64224970,64225580,64225869,64226148	0.576037
upper_lobe_of_left_lung_male_adult_37_years	chr16	19393734	19393735	19393734	-	High_confidence	65	65	77	4.507504	5.054677	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19380960	19393838	STRG.66332.5	-	19380960,19393375	19381674,19393838	0.831169
upper_lobe_of_left_lung_male_adult_37_years	chr10	35449700	35449726	35449700	+	RAMPAGE_only	5	5	27	1.580553	4.310443	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.629630
upper_lobe_of_left_lung_male_adult_37_years	chr12	111841678	111841705	111841678	-	High_confidence	2	2	8	0.468312	2.750000	chr12	111841557	111841731	SINE|MIR|MIRb	+	chr12	111839806	111841706	MAPKAPK5-AS1|ENST00000609228.1	-	111839806,111841326	111840031,111841706	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr3	50312367	50312420	50312396	-	High_confidence	4	5	21	1.229319	3.649001	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50299888	50312381	HYAL1|NM_153281.1	-	50299888,50300987,50302056,50303787,50309658,50312263	50300800,50301077,50302980,50303953,50309777,50312381	0.952381
upper_lobe_of_left_lung_male_adult_37_years	chr19	51027648	51027674	51027648	-	High_confidence	7	8	20	1.170780	3.321104	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022230	51027629	KLK11|NM_144947.1	-	51022230,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027629	0.700000
upper_lobe_of_left_lung_male_adult_37_years	chr1	116710552	116710576	116710552	-	RAMPAGE_only	3	3	8	0.468312	2.750000	chr1	116710505	116710863	LTR|Gypsy|LTR104_Mam	-	chr1	116574397	116667755	IGSF3|NM_001007237.2	-	116574397,116579391,116584644,116588693,116599940,116603623,116607941,116613764,116616079,116666283,116667617	116577562,116579877,116585052,116589104,116600345,116604025,116608331,116614175,116616457,116666956,116667755	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr2	187520611	187520617	187520616	-	High_confidence	10	13	18	1.053702	3.454822	chr2	187517160	187520609	LINE|L1|L1P3	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.944444
upper_lobe_of_left_lung_male_adult_37_years	chr12	643625	643636	643625	-	High_confidence	208	210	659	38.577212	6.312655	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.628225
upper_lobe_of_left_lung_male_adult_37_years	chr3	14181568	14181569	14181568	+	RAMPAGE_only	6	6	9	0.526851	2.500000	chr3	14181325	14181571	SINE|MIR|MIR	-	chr3	14178727	14198369	LSM3|NM_014463.2	+	14178727,14181559,14183936,14198035	14178881,14181670,14184032,14198369	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr19	41770846	41770982	41770896	+	RAMPAGE_only	59	64	252	14.751832	5.638819	chr19	41770580	41771297	LTR|ERV1|MER65-int	+	chr19	41755519	41772208	CEACAM6|NM_002483.6	+	41755519,41756599,41761248,41761968,41766182,41770801	41755702,41756959,41761527,41762223,41766299,41772208	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr16	15798662	15798667	15798664	-	RAMPAGE_only	4	6	10	0.585390	2.947703	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.900000
upper_lobe_of_left_lung_male_adult_37_years	chr16	10532117	10532587	10532117	-	RAMPAGE_only	108	138	1413	82.715630	6.344743	chr16	10532094	10532204	DNA|hAT-Charlie|MER5A	-	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.998585
upper_lobe_of_left_lung_male_adult_37_years	chr17	2975599	2975665	2975621	+	RAMPAGE_only	5	5	43	2.517178	4.719140	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2853860	3037738	STRG.68251.3	+	2853860,2905283,2957758,2963429,2963855,2965539,2980286,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007,3026349,3026943,3030921,3032410,3033391	2854102,2905368,2957794,2963462,2964068,2965643,2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026121,3026464,3027070,3030998,3032449,3037738	0.813953
upper_lobe_of_left_lung_male_adult_37_years	chr11	46274422	46274521	46274422	-	High_confidence	6	6	52	3.044029	4.537635	chr11	46274366	46274400	SINE|MIR|MIR1_Amn	-	chr11	46256354	46274547	STRG.50871.1	-	46256354,46270564,46274380	46256541,46270701,46274547	0.788462
upper_lobe_of_left_lung_male_adult_37_years	chr2	159428333	159428357	159428356	-	RAMPAGE_only	15	15	24	1.404936	4.262692	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.625000
upper_lobe_of_left_lung_male_adult_37_years	chr16	19393876	19393887	19393876	-	High_confidence	36	37	56	3.278185	4.653262	chr16	19393581	19394166	LTR|ERVK|LTR14C	-	chr16	19380960	19393838	STRG.66332.5	-	19380960,19393375	19381674,19393838	0.964286
upper_lobe_of_left_lung_male_adult_37_years	chr15	57451531	57451598	57451575	+	RAMPAGE_only	13	13	63	3.687958	4.668988	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr11	118700419	118700451	118700419	+	High_confidence	5	5	27	1.580553	4.532665	chr11	118700359	118700777	LTR|ERVL-MaLR|MLT1H	+	chr11	118700426	118708848	AP002954.1|ENST00000646572.1	+	118700426,118704607,118708381	118700643,118704838,118708848	0.777778
upper_lobe_of_left_lung_male_adult_37_years	chr20	45761978	45762026	45761993	+	High_confidence	13	13	39	2.283022	4.577463	chr20	45759753	45763699	LTR|ERV1|HERVH-int	+	chr20	45762017	45767513	STRG.76629.1	+	45762017,45765157	45762327,45767513	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr2	58113010	58113034	58113033	+	High_confidence	4	4	14	0.819546	2.807390	chr2	58113028	58113330	SINE|Alu|AluSg	+	chr2	58112904	58133138	STRG.8925.7	+	58112904,58123100,58131807	58113474,58123233,58133138	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr5	160187371	160187413	160187412	+	High_confidence	15	17	75	4.390426	4.852648	chr5	160187374	160187670	LINE|L2|L2b	-	chr5	160187366	160238735	FABP6|ENST00000393980.8	+	160187366,160199048,160213735,160229545,160232097,160234819,160238605	160187454,160199157,160213819,160229624,160232273,160234909,160238735	0.920000
upper_lobe_of_left_lung_male_adult_37_years	chr19	53865359	53865398	53865397	+	High_confidence	4	5	13	0.761007	3.392747	chr19	53865313	53865624	SINE|Alu|AluSx	-	chr19	53865583	53876435	MYADM|NM_001290193.1	+	53865583,53869753,53873527	53865728,53869838,53876435	0.923077
upper_lobe_of_left_lung_male_adult_37_years	chr12	53464773	53464796	53464795	+	RAMPAGE_only	3	3	8	0.468312	2.521641	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.875000
upper_lobe_of_left_lung_male_adult_37_years	chr13	30376941	30376964	30376963	-	High_confidence	3	5	11	0.643929	2.663533	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30374002	30376964	LINC00426|ENST00000416261.1	-	30374002,30375466,30376826	30374093,30375776,30376964	0.636364
upper_lobe_of_left_lung_male_adult_37_years	chr17	1486822	1486828	1486822	-	High_confidence	5	5	14	0.819546	3.392747	chr17	1486511	1486815	SINE|Alu|AluSx	-	chr17	1482488	1486921	MYO1C|ENST00000573853.5	-	1482488,1482860,1483609,1484147,1486879	1482558,1483059,1483725,1484303,1486921	0.928571
upper_lobe_of_left_lung_male_adult_37_years	chr2	231270487	231270530	231270529	+	High_confidence	37	43	157	9.190626	5.909230	chr2	231270419	231270687	LINE|L1|HAL1	-	chr2	231270742	231291435	ARMC9|ENST00000481520.1	+	231270742,231272954,231276635,231278381,231282058,231291352	231271072,231273078,231276775,231278458,231282133,231291435	0.738854
upper_lobe_of_left_lung_male_adult_37_years	chr15	44662622	44662623	44662622	-	RAMPAGE_only	8	8	12	0.702468	3.095795	chr15	44662388	44662674	SINE|Alu|AluJb	+	chr15	44563120	44663647	SPG11|ENST00000427534.6	-	44563120,44567423,44569397,44570524,44572682,44573546,44574901,44583813,44585635,44589251,44592330,44595258,44596082,44596783,44598264,44598630,44600466,44606024,44608443,44610839,44613429,44615362,44620189,44621758,44622219,44622727,44626330,44628668,44629232,44633504,44648865,44651490,44652128,44657094,44659078,44660431,44663390	44563301,44567592,44569505,44570658,44572820,44573745,44575041,44584558,44585850,44589414,44592438,44595459,44596355,44596943,44598373,44598836,44600632,44606091,44608605,44610985,44613536,44615566,44620403,44621934,44622347,44622799,44626507,44628844,44629388,44633637,44649011,44651939,44652266,44657296,44659303,44660616,44663647	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr3	183178934	183178945	183178934	-	RAMPAGE_only	4	4	12	0.702468	3.418296	chr3	183178904	183179130	DNA|hAT-Charlie|MER20	+	chr3	183153900	183163839	LAMP3|ENST00000476015.1	-	183153900,183162606,183163619	183154391,183162730,183163839	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr4	76234500	76234527	76234526	-	High_confidence	8	8	29	1.697631	4.066109	chr4	76234334	76234657	LTR|ERV1|MER61A	-	chr4	76158759	76234536	SCARB2|ENST00000638295.1	-	76158759,76163224,76166249,76168402,76169866,76174143,76175790,76176436,76179516,76180953,76195706,76234302	76161751,76163383,76166301,76168476,76169985,76174313,76175910,76176528,76179705,76181101,76195864,76234536	0.896552
upper_lobe_of_left_lung_male_adult_37_years	chr22	41544753	41544754	41544753	-	High_confidence	4	4	6	0.351234	2.584963	chr22	41544684	41544805	LINE|L2|L2	+	chr22	41525798	41544606	POLR3H|NM_001282884.1	-	41525798,41530686,41532093,41532658,41540698,41543990,41544510	41529336,41530888,41532157,41532745,41540795,41544121,41544606	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr4	26275240	26275241	26275240	-	High_confidence	9	9	11	0.643929	2.845351	chr4	26275096	26275224	SINE|MIR|MIRb	-	chr4	26268227	26275396	STRG.20702.2	-	26268227,26275159	26268397,26275396	0.727273
upper_lobe_of_left_lung_male_adult_37_years	chr1	12409854	12409855	12409854	+	RAMPAGE_only	4	4	7	0.409773	2.584963	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12382995	12509030	VPS13D|ENST00000645371.1	+	12382995,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12453838,12455997,12460200,12497499,12506852,12508892	12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12453899,12456130,12460396,12497631,12507093,12509030	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr6	88442918	88442928	88442927	-	High_confidence	4	4	8	0.468312	2.750000	chr6	88442599	88443120	LTR|ERVL-MaLR|MLT1F	-	chr6	88442083	88442919	STRG.31537.1	-	88442083,88442841	88442326,88442919	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr16	760891	760925	760924	+	High_confidence	10	12	22	1.287858	3.784184	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761072	768865	MSLN|NM_013404.4	+	761072,762671,763232,763641,764022,764646,764906,765109,765526,765690,766058,766334,766643,766884,767375,768378,768647	761174,762765,763276,763691,764143,764726,765036,765303,765617,765790,766237,766490,766810,767012,767470,768565,768865	0.909091
upper_lobe_of_left_lung_male_adult_37_years	chr20	24930628	24930692	24930639	+	High_confidence	67	68	387	22.654599	6.250449	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24930635	24932983	STRG.75983.1	+	24930635,24931346	24930774,24932983	0.963824
upper_lobe_of_left_lung_male_adult_37_years	chr1	6208681	6208682	6208681	-	High_confidence	149	149	149	8.722313	4.110486	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.973154
upper_lobe_of_left_lung_male_adult_37_years	chr17	75090126	75090129	75090126	+	High_confidence	5	6	10	0.585390	2.725481	chr17	75089992	75090247	SINE|Alu|AluSx	-	chr17	75090161	75100182	SLC16A5|ENST00000584207.5	+	75090161,75093588,75098037,75100006	75090332,75093835,75098181,75100182	0.800000
upper_lobe_of_left_lung_male_adult_37_years	chr17	35367024	35367035	35367034	-	High_confidence	3	3	7	0.409773	2.521641	chr17	35366789	35367087	SINE|Alu|AluJb	+	chr17	35363621	35367294	SLFN11|ENST00000589562.1	-	35363621,35366946	35363826,35367294	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr8	65979196	65979211	65979196	+	High_confidence	40	40	66	3.863575	4.532091	chr8	65979005	65979377	LTR|ERVL-MaLR|THE1B	+	chr8	65979199	66100533	STRG.40228.1	+	65979199,66043487,66051530,66076659,66080376,66099936	65979293,66043611,66051666,66076873,66080548,66100533	0.818182
upper_lobe_of_left_lung_male_adult_37_years	chr15	88635643	88635655	88635654	+	High_confidence	20	21	42	2.458639	4.442679	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303234.1	+	88635636,88636166,88639342,88652109,88655414	88635700,88636292,88639594,88652310,88656344	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr2	55618849	55618866	55618850	-	High_confidence	3	5	10	0.585390	2.921928	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr4	170226587	170226588	170226587	+	High_confidence	87	89	101	5.912441	5.331928	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.742574
upper_lobe_of_left_lung_male_adult_37_years	chr11	44564415	44564429	44564426	+	High_confidence	6	6	20	1.170780	3.541446	chr11	44564373	44564477	SINE|MIR|MIRc	+	chr11	44564426	44615295	CD82|ENST00000526958.5	+	44564426,44587474,44594642,44600157,44605057,44605354,44615271	44564502,44587556,44594725,44600230,44605182,44605429,44615295	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr2	75569674	75569722	75569721	-	High_confidence	3	3	10	0.585390	3.321928	chr2	75569550	75569879	LINE|L2|L2b	+	chr2	75492317	75569722	EVA1A|ENST00000233712.5	-	75492317,75518055,75522364,75569475	75493609,75518208,75522487,75569722	0.700000
upper_lobe_of_left_lung_male_adult_37_years	chr6	17779597	17779622	17779621	-	RAMPAGE_only	3	3	7	0.409773	2.521641	chr6	17779257	17779571	SINE|Alu|AluSp	-	chr6	17759253	17794697	KIF13A|ENST00000502297.5	-	17759253,17764154,17771113,17771907,17773477,17775014,17777276,17778946,17779591,17780729,17781176,17783645,17785514,17787775,17794248,17794571	17760877,17764946,17771218,17772059,17773583,17775062,17777354,17779099,17779684,17780906,17781301,17783701,17785641,17787875,17794395,17794697	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr19	54617130	54617153	54617147	+	High_confidence	9	10	37	2.165944	4.898378	chr19	54616418	54617550	LTR|ERV1|MER4B-int	+	chr19	54617157	54637528	LILRB1|ENST00000396331.5	+	54617157,54630516,54631025,54631270,54631499,54631934,54632463,54633015,54633637,54633973,54634640,54635103,54635258,54635556,54636496,54636731	54617349,54630633,54631107,54631306,54631787,54632237,54632760,54633318,54633688,54634021,54634763,54635179,54635296,54635609,54636652,54637528	0.675676
upper_lobe_of_left_lung_male_adult_37_years	chr3	11226013	11226047	11226046	+	High_confidence	5	5	18	1.053702	3.683542	chr3	11225862	11226145	LINE|L2|L2b	-	chr3	11226030	11259075	HRH1|ENST00000413416.1	+	11226030,11259002	11226531,11259075	0.555556
upper_lobe_of_left_lung_male_adult_37_years	chr10	27983036	27983078	27983077	-	High_confidence	4	5	14	0.819546	3.378783	chr10	27982876	27983540	LTR|ERVL|LTR50	+	chr10	27812163	27983106	ARMC4|NM_001312689.1	-	27812163,27860624,27862433,27907662,27935009,27936725,27939896,27940562,27944221,27944815,27961567,27968922,27971107,27981465,27982928	27812625,27860846,27862622,27907777,27935252,27936880,27940007,27940805,27944431,27944962,27961715,27969018,27971313,27981582,27983106	0.928571
upper_lobe_of_left_lung_male_adult_37_years	chr11	131257535	131257537	131257535	+	RAMPAGE_only	4	8	10	0.585390	3.121928	chr11	131256681	131259865	LTR|ERV1|HERVH-int	-	chr11	131350307	132335286	STRG.53366.1	+	131350307,131370687,131911563,132146281,132212021,132307688,132310111,132314551,132330152,132335045	131350452,131370888,131911648,132146514,132212147,132307823,132310232,132314703,132330185,132335286	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr14	81170392	81170420	81170402	-	High_confidence	5	5	24	1.404936	3.882045	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.916667
upper_lobe_of_left_lung_male_adult_37_years	chr17	77127872	77127873	77127872	+	High_confidence	10	10	14	0.819546	3.521641	chr17	77127678	77128097	LTR|ERVL-MaLR|MLT1C	+	chr17	77127872	77190952	SEC14L1|ENST00000586429.5	+	77127872,77142649,77143566,77190802	77128103,77142750,77143659,77190952	0.785714
upper_lobe_of_left_lung_male_adult_37_years	chr8	16192969	16193013	16193012	-	High_confidence	19	24	33	1.931788	4.127283	chr8	16192904	16193159	SINE|Alu|AluSc8	-	chr8	16139316	16192791	MSR1|NM_002445.3	-	16139316,16143557,16150230,16155063,16164064,16168457,16175186,16177885,16192597	16141045,16143611,16150311,16155144,16164251,16168870,16175300,16177992,16192791	0.757576
upper_lobe_of_left_lung_male_adult_37_years	chr7	3482689	3482741	3482730	+	RAMPAGE_only	2	5	14	0.819546	3.392747	chr7	3482574	3482762	LINE|L1|L1MEd	+	chr7	3301586	4266408	SDK1|ENST00000389531.7	+	3301586,3619079,3639003,3641957,3821449,3950922,3951729,3958930,3962656,3967317,3969256,3971465,3974368,3987185,4010965,4012094,4017170,4049347,4051637,4067837,4076997,4079462,4110662,4113288,4114036,4127380,4129907,4132324,4145721,4149261,4158447,4161785,4174221,4178484,4205878,4208098,4210024,4220108,4221238,4233254,4237646,4241792,4245675,4265123	3301884,3619239,3639110,3642105,3821583,3951034,3951920,3959014,3962851,3967434,3969424,3971568,3974545,3987322,4011113,4012235,4017352,4049463,4051830,4067936,4077189,4079584,4110772,4113439,4114274,4127496,4130097,4132423,4145916,4149463,4158551,4161856,4174357,4178586,4205994,4208285,4210162,4220270,4221364,4233419,4237784,4241913,4245805,4266408	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr16	10444721	10444745	10444721	-	RAMPAGE_only	6	6	10	0.585390	2.947703	chr16	10443659	10445502	LTR|ERV1|HERVIP10B3-int	-	chr16	10440089	10498402	STRG.66146.8	-	10440089,10444317	10444200,10498402	0.900000
upper_lobe_of_left_lung_male_adult_37_years	chr5	140250522	140250523	140250522	-	RAMPAGE_only	8	8	10	0.585390	3.169925	chr5	140250210	140250661	LINE|L2|L2a	+	chr5	140245346	140281535	PFDN1|ENST00000512707.1	-	140245346,140281448	140246057,140281535	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr15	42271577	42271614	42271601	-	High_confidence	4	6	23	1.346397	4.011365	chr15	42271434	42271732	DNA|TcMar-Tigger|Tigger3a	+	chr15	42239667	42271601	TMEM87A|ENST00000561578.5	-	42239667,42244049,42260957,42261195,42264089,42267946,42271554	42239731,42244167,42261002,42261249,42264203,42268032,42271601	0.869565
upper_lobe_of_left_lung_male_adult_37_years	chr2	177234004	177234067	177234004	-	RAMPAGE_only	5	5	28	1.639092	3.946223	chr2	177233751	177233962	SINE|MIR|MIRc	-	chr2	177232276	177263454	NFE2L2|ENST00000423513.5	-	177232276,177234004,177263402	177233339,177234271,177263454	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr12	8681595	8681600	8681599	+	High_confidence	4	4	8	0.468312	2.750000	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.875000
upper_lobe_of_left_lung_male_adult_37_years	chr10	79611560	79611630	79611560	+	High_confidence	11	11	95	5.561207	5.375226	chr10	79611409	79611573	SINE|MIR|MIR3	-	chr10	79610954	79613840	SFTPA1|ENST00000439264.1	+	79610954,79611318,79611802,79612311,79613188,79613736	79610982,79611389,79611997,79612431,79613266,79613840	0.778947
upper_lobe_of_left_lung_male_adult_37_years	chr2	113078001	113078003	113078002	+	RAMPAGE_only	4	6	8	0.468312	3.000000	chr2	113077919	113078146	LINE|L2|L2c	-	chr2	113111115	113134013	IL1RN|ENST00000409052.5	+	113111115,113112999,113120065,113121447,113127688,113129575,113131044,113132655,113133602	113111199,113113114,113120128,113121618,113127740,113129664,113131157,113133460,113134013	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr9	33068823	33068930	33068841	-	RAMPAGE_only	5	5	35	2.048866	4.286896	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.971429
upper_lobe_of_left_lung_male_adult_37_years	chr11	72135675	72135725	72135708	+	High_confidence	13	17	59	3.453802	4.745406	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	0.966102
upper_lobe_of_left_lung_male_adult_37_years	chr3	128626815	128626816	128626815	-	RAMPAGE_only	6	6	9	0.526851	2.750000	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr1	88887263	88887313	88887263	-	RAMPAGE_only	3	3	16	0.936624	3.373557	chr1	88886926	88887218	SINE|Alu|AluSx1	-	chr1	88853223	88891496	GTF2B|ENST00000448623.5	-	88853223,88857372,88859881,88860139,88863980,88887260,88891482	88853346,88857487,88860011,88860286,88864114,88887367,88891496	0.937500
upper_lobe_of_left_lung_male_adult_37_years	chr17	59619894	59619923	59619894	+	High_confidence	622	693	1916	112.160755	6.115331	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.963987
upper_lobe_of_left_lung_male_adult_37_years	chrX	13303404	13303407	13303406	-	High_confidence	27	41	49	2.868412	4.072896	chrX	13303238	13303604	LTR|ERVL-MaLR|THE1B	-	chrX	13266047	13303392	LINC02154|ENST00000412485.1	-	13266047,13287428,13303319	13267335,13287564,13303392	0.918367
upper_lobe_of_left_lung_male_adult_37_years	chr7	40547018	40547019	40547018	-	High_confidence	4	5	7	0.409773	2.584963	chr7	40546944	40547406	LTR|ERVL|MLT2B4	-	chr7	40538126	40546928	AC004988.1|ENST00000415237.1	-	40538126,40546713	40539682,40546928	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr1	183590892	183590914	183590892	-	High_confidence	9	10	37	2.165944	4.540402	chr1	183590775	183591272	LTR|ERV1|LTR27B	+	chr1	183555562	183590876	NCF2|ENST00000367536.5	-	183555562,183560095,183563194,183563433,183564004,183565703,183566919,183567203,183569141,183570779,183573184,183574486,183577598,183586894,183590155,183590839	183556230,183560273,183563306,183563585,183564030,183565779,183566988,183567345,183569185,183570839,183573292,183574621,183577707,183586977,183590359,183590876	0.972973
upper_lobe_of_left_lung_male_adult_37_years	chr2	9554949	9554965	9554953	-	High_confidence	31	33	72	4.214809	5.338337	chr2	9554869	9555063	DNA|hAT-Tip100?|MamRep1879	-	chr2	9488636	9554729	ADAM17|ENST00000648548.1	-	9488636,9491100,9492897,9493746,9494636,9497113,9502172,9505165,9509978,9517900,9518102,9521202,9523248,9526110,9527785,9535833,9536697,9543152,9551474,9554708	9490518,9491151,9492986,9493825,9494767,9497248,9502276,9505365,9510131,9517989,9518247,9521316,9523338,9526264,9527954,9535922,9536828,9543285,9551757,9554729	0.708333
upper_lobe_of_left_lung_male_adult_37_years	chr7	128984187	128984198	128984187	-	RAMPAGE_only	4	4	13	0.761007	3.084963	chr7	128983986	128984151	LINE|L1|L1M5	-	chr7	128957222	129054883	TNPO3|ENST00000471166.1	-	128957222,128967279,128970147,128972425,128974867,128975818,128978982,128979970,128982247,128984167,128986728,128989960,128991998,128993806,128997388,129000428,129001058,129005015,129014978,129016982,129017956,129054650	128957315,128967392,128970315,128972582,128974962,128975935,128979123,128980031,128982324,128984259,128986920,128990202,128992090,128993914,128997535,129000567,129001234,129005159,129015135,129017056,129018157,129054883	0.923077
upper_lobe_of_left_lung_male_adult_37_years	chr5	42825888	42825898	42825895	-	High_confidence	13	27	56	3.278185	5.009246	chr5	42825250	42825999	LTR|ERV1|LTR1F	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.946429
upper_lobe_of_left_lung_male_adult_37_years	chr15	49466666	49466677	49466676	+	RAMPAGE_only	6	7	11	0.643929	2.921928	chr15	49466435	49466744	LINE|L2|L2c	-	chr15	49434395	49484520	FGF7|ENST00000560704.1	+	49434395,49483150,49484309	49434653,49483254,49484520	0.909091
upper_lobe_of_left_lung_male_adult_37_years	chr8	102930141	102930171	102930162	+	High_confidence	9	9	31	1.814709	3.922829	chr8	102929749	102930430	LTR|ERVL|LTR50	-	chr8	102930181	102977738	AZIN1-AS1|ENST00000517996.5	+	102930181,102937623,102941920,102977586	102930518,102937757,102942053,102977738	0.903226
upper_lobe_of_left_lung_male_adult_37_years	chr15	58109697	58109705	58109704	+	High_confidence	24	24	44	2.575717	4.239764	chr15	58109645	58110017	LINE|L2|L2c	-	chr15	58109783	58124342	STRG.63862.1	+	58109783,58111040,58124166	58110173,58111123,58124342	0.977273
upper_lobe_of_left_lung_male_adult_37_years	chr19	3062922	3062983	3062922	-	High_confidence	26	30	144	8.429618	5.495375	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.951389
upper_lobe_of_left_lung_male_adult_37_years	chr3	135965670	135965749	135965723	+	High_confidence	23	27	159	9.307704	5.625882	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.968553
upper_lobe_of_left_lung_male_adult_37_years	chr8	17895504	17895515	17895504	-	High_confidence	3	3	10	0.585390	2.921928	chr8	17895425	17895512	SINE|MIR|MIR	-	chr8	17864390	17895538	FGL1|NM_201552.1	-	17864390,17868547,17868915,17874018,17874361,17881998,17885491,17891680,17895446	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17891807,17895538	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr16	75248150	75248151	75248150	-	High_confidence	23	23	23	1.346397	3.914866	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.869565
upper_lobe_of_left_lung_male_adult_37_years	chr5	75611178	75611182	75611178	+	High_confidence	7	7	14	0.819546	2.777363	chr5	75610835	75611347	Retroposon|SVA|SVA_A	-	chr5	75611458	75671846	ANKDD1B|ENST00000601380.2	+	75611458,75616803,75620314,75625646,75625850,75634897,75635783,75653141,75656028,75659282,75663393,75666791,75669251,75670978	75611827,75616907,75620413,75625745,75625955,75634996,75635882,75653240,75656127,75659381,75663489,75666993,75669383,75671846	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr22	39021146	39021182	39021155	+	High_confidence	5	5	20	1.170780	4.021928	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr4	184768336	184768388	184768348	-	RAMPAGE_only	3	3	26	1.522014	4.168296	chr4	184768056	184768306	SINE|MIR|MIRc	-	chr4	184755600	184766702	ACSL1|ENST00000503407.5	-	184755600,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621	184757265,184757706,184757920,184760500,184762493,184763255,184764925,184765986,184766702	0.730769
upper_lobe_of_left_lung_male_adult_37_years	chr4	26275337	26275348	26275337	-	High_confidence	2	2	8	0.468312	2.521641	chr4	26275286	26275346	SINE|MIR|MIR	+	chr4	26268227	26275396	STRG.20702.2	-	26268227,26275159	26268397,26275396	0.625000
upper_lobe_of_left_lung_male_adult_37_years	chr8	103809826	103809847	103809846	+	RAMPAGE_only	13	14	21	1.229319	3.236857	chr8	103809697	103809952	LTR|Gypsy?|LTR88a	+	chr8	103819187	104254428	RIMS2|NM_014677.4	+	103819187,103885297,103910133,103912052,103915494,103916413,103918440,103921671,103931262,103936550,103942772,103961064,103975349,103989304,103998184,104013441,104014505,104244915,104248700,104249486,104251023,104251601	103819629,103886223,103910201,103912172,103915594,103916537,103918487,103921784,103931393,103936722,103942926,103961133,103975506,103989421,103998250,104013621,104014615,104245057,104248813,104249588,104251163,104254428	0.952381
upper_lobe_of_left_lung_male_adult_37_years	chr10	79980418	79980428	79980422	-	RAMPAGE_only	3	3	15	0.878085	3.467720	chr10	79979245	79981467	LINE|L1|L1M1	+	chr10	79941448	79982614	SFTPD|ENST00000444384.3	-	79941448,79941953,79942387,79942762,79946460,79982574	79941514,79942070,79942504,79942879,79946662,79982614	0.600000
upper_lobe_of_left_lung_male_adult_37_years	chr1	153552102	153552108	153552107	-	RAMPAGE_only	8	10	15	0.878085	3.456565	chr1	153551862	153552168	SINE|Alu|AluSx	+	chr1	153547328	153549372	S100A3|ENST00000368713.7	-	153547328,153548344,153549180	153547846,153548490,153549372	0.933333
upper_lobe_of_left_lung_male_adult_37_years	chr12	69119017	69119080	69119054	-	High_confidence	31	31	193	11.298030	6.575053	chr12	69118228	69120346	LINE|L2|L2a	+	chr12	69065736	69119076	STRG.56087.1	-	69065736,69118955	69070007,69119076	0.616580
upper_lobe_of_left_lung_male_adult_37_years	chr3	129559620	129559645	129559620	-	High_confidence	4	4	8	0.468312	3.000000	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr1	12572750	12572771	12572759	-	RAMPAGE_only	4	4	13	0.761007	2.918296	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.923077
upper_lobe_of_left_lung_male_adult_37_years	chr1	166850294	166850323	166850301	+	RAMPAGE_only	4	4	17	0.995163	3.250000	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.941176
upper_lobe_of_left_lung_male_adult_37_years	chr8	143558019	143558020	143558019	+	High_confidence	15	15	15	0.878085	3.373557	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr2	201139315	201139379	201139359	+	RAMPAGE_only	11	12	29	1.697631	3.958229	chr2	201139001	201139967	LTR|ERVK|LTR5_Hs	+	chr2	201116406	201139877	CFLAR|ENST00000395148.6	+	201116406,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.896552
upper_lobe_of_left_lung_male_adult_37_years	chr3	44439852	44439875	44439874	-	RAMPAGE_only	9	13	44	2.575717	3.985005	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431719	44477670	ZNF445|ENST00000396077.7	-	44431719,44449512,44450446,44450867,44451313,44455120,44458243,44477590	44448739,44449623,44450573,44450962,44451482,44455696,44458364,44477670	0.590909
upper_lobe_of_left_lung_male_adult_37_years	chr1	46804345	46804355	46804354	+	RAMPAGE_only	9	9	17	0.995163	3.852169	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.588235
upper_lobe_of_left_lung_male_adult_37_years	chr15	80059918	80059933	80059918	+	High_confidence	105	123	261	15.278683	4.978996	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.988506
upper_lobe_of_left_lung_male_adult_37_years	chr11	71745875	71745938	71745881	+	High_confidence	74	76	559	32.723310	6.658617	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.928444
upper_lobe_of_left_lung_male_adult_37_years	chr11	18706988	18707011	18706988	-	RAMPAGE_only	2	2	9	0.526851	2.750000	chr11	18706899	18707049	DNA|hAT-Ac|OldhAT1	-	chr11	18704304	18726180	IGSF22|ENST00000513874.5	-	18704304,18705816,18706913,18707803,18708206,18709386,18710326,18710654,18712081,18713851,18714276,18714499,18715431,18716727,18717930,18718614,18719715,18720063,18720185,18721534,18721909,18724127,18726073	18704538,18706146,18707213,18707996,18708295,18709683,18710455,18710828,18712384,18714148,18714418,18714624,18715716,18717000,18718093,18718728,18719893,18720103,18720285,18721671,18722041,18724269,18726180	0.666667
upper_lobe_of_left_lung_male_adult_37_years	chr9	39810023	39810084	39810033	-	High_confidence	34	34	68	3.980653	5.374081	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803190	39810013	STRG.43520.2	-	39803190,39809485,39809730	39803859,39809615,39810013	0.897059
upper_lobe_of_left_lung_male_adult_37_years	chr9	128684459	128684493	128684492	-	High_confidence	7	7	20	1.170780	3.884184	chr9	128684298	128684493	LINE|L2|L2	+	chr9	128683011	128684551	STRG.45676.1	-	128683011	128684551	0.600000
upper_lobe_of_left_lung_male_adult_37_years	chr6	30935397	30935403	30935397	+	High_confidence	3	3	8	0.468312	2.521641	chr6	30935355	30935668	LINE|L1|L1M5	-	chr6	30934522	30954221	MUCL3|ENST00000636043.1	+	30934522,30937200,30938068,30941066,30948546,30952970	30934674,30937301,30938183,30941081,30952499,30954221	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr10	79559870	79559901	79559900	-	High_confidence	8	8	22	1.287858	4.084184	chr10	79559735	79559911	SINE|MIR|MIR3	+	chr10	79555851	79559871	SFTPA2|NM_001320814.1	-	79555851,79558051,79558885,79559311,79559674	79557585,79558129,79559005,79559506,79559871	0.681818
upper_lobe_of_left_lung_male_adult_37_years	chr5	122478855	122478881	122478855	-	High_confidence	6	6	31	1.814709	4.607264	chr5	122478731	122478846	LTR|ERV1|LTR7	-	chr5	122436496	122479087	MGC32805|NR_051996.1	-	122436496,122450546,122451780,122454375,122478585,122479014	122437337,122450666,122451806,122454509,122478815,122479087	0.548387
upper_lobe_of_left_lung_male_adult_37_years	chr2	200889279	200889318	200889293	-	High_confidence	19	19	77	4.507504	5.349524	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.649351
upper_lobe_of_left_lung_male_adult_37_years	chr2	120018800	120018832	120018800	+	High_confidence	21	22	69	4.039192	4.365609	chr2	120018637	120018945	SINE|Alu|AluJo	-	chr2	120019084	120179118	EPB41L5|ENST00000452780.1	+	120019084,120042005,120073177,120074099,120075475,120075700,120076970,120077228,120078492,120087170,120090346,120091554,120093248,120100243,120100698,120127687,120131617,120143002,120146224,120160880,120164835,120167465,120167879,120174840	120019264,120042110,120073220,120074178,120075520,120075753,120077091,120077316,120078581,120087240,120090516,120091661,120093276,120100286,120100814,120127851,120131715,120143131,120146289,120160974,120164910,120167507,120168007,120179118	0.971014
upper_lobe_of_left_lung_male_adult_37_years	chr7	158863386	158863410	158863400	+	RAMPAGE_only	3	4	11	0.643929	2.921928	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.727273
upper_lobe_of_left_lung_male_adult_37_years	chr20	18794063	18794086	18794077	+	High_confidence	9	9	29	1.697631	4.162295	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.931034
upper_lobe_of_left_lung_male_adult_37_years	chr4	80301327	80301328	80301327	+	RAMPAGE_only	12	12	12	0.702468	2.855389	chr4	80301302	80301442	DNA|TcMar-Tigger|Tigger9b	+	chr4	80335719	80963756	C4orf22|NM_152770.2	+	80335719,80362753,80583092,80869992,80944809,80963516	80335879,80362884,80583183,80870135,80944939,80963756	0.916667
upper_lobe_of_left_lung_male_adult_37_years	chr5	34244811	34244814	34244811	-	RAMPAGE_only	4	4	8	0.468312	2.750000	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34175821	34218343	AC138409.2|ENST00000507274.1	-	34175821,34179012,34182679,34218294	34175957,34179097,34182867,34218343	0.625000
upper_lobe_of_left_lung_male_adult_37_years	chr1	239730464	239730465	239730464	-	High_confidence	13	13	13	0.761007	3.238901	chr1	239730338	239730702	LINE|L2|L2c	-	chr1	239706424	239730465	CHRM3-AS2|ENST00000600831.5	-	239706424,239707533,239714176,239730400	239706496,239707760,239714264,239730465	0.923077
upper_lobe_of_left_lung_male_adult_37_years	chr1	78143599	78143638	78143632	-	High_confidence	14	14	61	3.570880	4.318960	chr1	78143187	78143687	LINE|L2|L2a	+	chr1	78142246	78143645	STRG.2735.1	-	78142246,78143340	78142291,78143645	0.868852
upper_lobe_of_left_lung_male_adult_37_years	chr9	110170594	110170878	110170695	+	RAMPAGE_only	62	63	270	15.805534	6.414174	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr20	38985962	38985969	38985968	+	RAMPAGE_only	6	6	12	0.702468	2.594907	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.916667
upper_lobe_of_left_lung_male_adult_37_years	chr2	227534915	227534933	227534932	+	RAMPAGE_only	5	6	20	1.170780	3.681881	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.900000
upper_lobe_of_left_lung_male_adult_37_years	chr7	7566500	7566534	7566514	-	High_confidence	107	158	421	24.644926	6.495131	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.779097
upper_lobe_of_left_lung_male_adult_37_years	chr2	187529448	187529486	187529485	-	RAMPAGE_only	7	9	28	1.639092	4.521641	chr2	187529293	187529670	LTR|ERVL-MaLR|MLT1B	-	chr2	187467001	187519860	TFPI|ENST00000481132.5	-	187467001,187467752,187484123,187488336,187496880,187503647,187513615	187467042,187467932,187484987,187488375,187497078,187503770,187519860	0.964286
upper_lobe_of_left_lung_male_adult_37_years	chr4	81154211	81154222	81154211	-	High_confidence	17	24	40	2.341561	4.491220	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.950000
upper_lobe_of_left_lung_male_adult_37_years	chr15	55513689	55513699	55513698	-	RAMPAGE_only	10	10	23	1.346397	4.095795	chr15	55513405	55516274	LTR|ERV1|HERVE_a-int	-	chr15	55417754	55508234	DYX1C1|NM_001033560.1	-	55417754,55434904,55439471,55450221,55466929,55491122,55497711,55498206,55508121	55418133,55435058,55439581,55450367,55467161,55491256,55497859,55498584,55508234	0.739130
upper_lobe_of_left_lung_male_adult_37_years	chr16	2331243	2331290	2331272	-	RAMPAGE_only	2	2	11	0.643929	2.921928	chr16	2331202	2331498	SINE|Alu|AluSz6	-	chr16	2323338	2329724	ABCA3|ENST00000567910.1	-	2323338,2324403,2326009,2326412,2328452,2329647	2323688,2324531,2326274,2326492,2328757,2329724	0.727273
upper_lobe_of_left_lung_male_adult_37_years	chr11	57794012	57794013	57794012	+	RAMPAGE_only	5	5	8	0.468312	2.500000	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr4	184855621	184855685	184855649	-	High_confidence	18	20	98	5.736824	5.913014	chr4	184855538	184855766	LTR|ERVL-MaLR|MLT1J1	-	chr4	184843295	184855652	MIR3945HG|NR_132989.1	-	184843295,184850494,184855468	184844925,184850599,184855652	0.673469
upper_lobe_of_left_lung_male_adult_37_years	chr2	218125280	218125297	218125280	+	High_confidence	5	5	13	0.761007	2.855389	chr2	218123953	218125352	LINE|L1|L1PBb	-	chr2	218125288	218135403	CXCR2|ENST00000453237.5	+	218125288,218126290,218129313,218134776	218125359,218126353,218129365,218135403	0.923077
upper_lobe_of_left_lung_male_adult_37_years	chr6	33638867	33638881	33638880	+	RAMPAGE_only	4	4	9	0.526851	2.750000	chr6	33638702	33639082	LINE|L2|L2c	-	chr6	33621378	33696574	ITPR3|NM_002224.3	+	33621378,33640483,33655765,33657931,33658669,33659020,33659465,33662527,33662910,33663499,33663737,33664869,33665052,33665834,33667128,33667791,33668514,33668973,33670324,33670670,33671164,33672028,33673590,33674207,33675690,33676767,33677014,33677503,33678420,33678638,33679881,33680328,33680554,33682523,33683206,33684019,33684356,33684597,33684773,33685358,33685642,33686052,33686408,33687008,33687225,33687477,33688056,33688238,33688655,33689237,33690033,33690916,33691614,33691800,33692727,33693544,33694923,33695711	33621691,33640554,33655887,33658018,33658828,33659119,33659549,33662674,33663006,33663550,33663880,33664969,33665213,33665976,33667290,33667964,33668634,33669156,33670576,33670815,33671306,33672228,33673720,33674265,33675856,33676932,33677089,33677629,33678543,33678839,33680133,33680454,33680680,33682644,33683397,33684168,33684465,33684688,33684943,33685533,33685827,33686253,33686519,33687104,33687327,33687564,33688167,33688431,33688781,33689410,33690198,33691109,33691719,33691928,33692893,33693705,33695085,33696574	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr6	26474324	26474340	26474324	+	RAMPAGE_only	2	2	9	0.526851	2.750000	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.777778
upper_lobe_of_left_lung_male_adult_37_years	chr18	7946878	7946898	7946878	+	High_confidence	20	20	50	2.926951	4.497263	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.820000
upper_lobe_of_left_lung_male_adult_37_years	chr19	48868595	48868617	48868613	-	High_confidence	180	195	744	43.553028	7.386443	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.993280
upper_lobe_of_left_lung_male_adult_37_years	chr2	203015483	203015529	203015503	+	High_confidence	9	9	53	3.102568	4.638563	chr2	203015479	203015763	SINE|Alu|AluSx1	-	chr2	203015790	203041857	NBEAL1|ENST00000492870.1	+	203015790,203016155,203041764	203015864,203016427,203041857	0.867925
upper_lobe_of_left_lung_male_adult_37_years	chr22	50757215	50757248	50757247	+	High_confidence	3	4	10	0.585390	3.169925	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.700000
upper_lobe_of_left_lung_male_adult_37_years	chr8	39082976	39083070	39083065	+	RAMPAGE_only	11	11	49	2.868412	4.622277	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.673469
upper_lobe_of_left_lung_male_adult_37_years	chr21	42524977	42524978	42524977	+	RAMPAGE_only	8	9	12	0.702468	3.095795	chr21	42524752	42525562	LTR|ERVL|MER21C	+	chr21	42513913	42581440	SLC37A1|ENST00000352133.2	+	42513913,42518276,42525775,42534697,42535471,42539511,42542403,42543435,42547102,42554061,42558957,42562077,42563814,42564707,42565826,42566984,42568359,42574817,42579735,42580344	42514717,42518510,42525857,42534830,42535550,42539647,42542480,42543602,42547140,42554142,42559089,42562168,42563877,42564793,42565875,42567058,42568438,42574915,42579800,42581440	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr17	1648195	1648223	1648198	-	High_confidence	2	3	12	0.702468	3.095795	chr17	1648093	1648307	LINE|L2|L2b	+	chr17	1646192	1648846	RILP|ENST00000570858.5	-	1646192,1646905,1647834,1648349	1646619,1646989,1647957,1648846	0.583333
upper_lobe_of_left_lung_male_adult_37_years	chr6	118651538	118651593	118651592	-	High_confidence	46	46	240	14.049364	6.491993	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	0.979167
upper_lobe_of_left_lung_male_adult_37_years	chr2	86482577	86482578	86482577	+	RAMPAGE_only	19	19	21	1.229319	3.426367	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.761905
upper_lobe_of_left_lung_male_adult_37_years	chr3	193506779	193506780	193506779	+	High_confidence	218	219	226	13.229818	6.527375	chr3	193506586	193506961	LTR|ERVL-MaLR|THE1C	+	chr3	193506795	193556409	STRG.19691.1	+	193506795,193540009,193554769	193506878,193540090,193556409	0.752212
upper_lobe_of_left_lung_male_adult_37_years	chr4	152850642	152850656	152850655	+	High_confidence	6	6	10	0.585390	2.947703	chr4	152850580	152850736	DNA|hAT-Charlie|MER5A1	+	chr4	152850647	152881111	ARFIP1|ENST00000513361.1	+	152850647,152863605,152870752,152872451,152880962	152850727,152863714,152870848,152872564,152881111	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr5	59216968	59216972	59216971	-	High_confidence	3	5	11	0.643929	3.095795	chr5	59216768	59217041	LINE|L2|L2c	+	chr5	59172404	59217160	STRG.25202.13	-	59172404,59185188,59193499,59215776,59216570	59180644,59185262,59193536,59215968,59217160	0.727273
upper_lobe_of_left_lung_male_adult_37_years	chr20	45762138	45762162	45762158	+	High_confidence	12	13	35	2.048866	4.321721	chr20	45759753	45763699	LTR|ERV1|HERVH-int	+	chr20	45762017	45767513	STRG.76629.1	+	45762017,45765157	45762327,45767513	0.971429
upper_lobe_of_left_lung_male_adult_37_years	chr16	30729550	30729570	30729569	+	RAMPAGE_only	2	3	6	0.351234	2.584963	chr16	30729600	30729733	LINE|CR1|L3	+	chr16	30707257	30739733	SRCAP|ENST00000395059.6	+	30707257,30707571,30709512,30709850,30710753,30710998,30711570,30711834,30712261,30712678,30713207,30713518,30716065,30716292,30720161,30720712,30721188,30722121,30722962,30723583,30728965,30729369,30733279,30733601,30733893,30734495,30736199,30736540,30737048	30707368,30707712,30709735,30710128,30710847,30711088,30711744,30712157,30712439,30712815,30713377,30713711,30716202,30716479,30720331,30720978,30721476,30722286,30723229,30725082,30729231,30729572,30733449,30733798,30734008,30734615,30736394,30736624,30739733	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr4	153687951	153687954	153687951	+	RAMPAGE_only	9	9	15	0.878085	3.506891	chr4	153687920	153688176	LTR|ERV1|MER57A-int	+	chr4	153684279	153705452	TLR2|ENST00000642700.1	+	153684279,153687901,153702891	153684360,153688047,153705452	0.666667
upper_lobe_of_left_lung_male_adult_37_years	chr1	189149762	189149763	189149762	+	High_confidence	10	11	11	0.643929	2.550341	chr1	189149549	189150337	LTR|ERV1|LTR1A2	+	chr1	189149634	189307878	STRG.5646.1	+	189149634,189150541,189307728	189149876,189150759,189307878	0.909091
upper_lobe_of_left_lung_male_adult_37_years	chr12	40158520	40158581	40158580	-	High_confidence	22	23	55	3.219646	4.884155	chr12	40158492	40158651	LTR|Gypsy?|LTR85c	-	chr12	40140925	40158489	STRG.54865.1	-	40140925,40144034,40152028,40157853,40158435	40142634,40144304,40152143,40158055,40158489	0.945455
upper_lobe_of_left_lung_male_adult_37_years	chr10	120980805	120980859	120980805	-	High_confidence	28	33	61	3.570880	4.679412	chr10	120980711	120980892	DNA|hAT-Charlie|MER113	+	chr10	120890569	120980700	STRG.49414.5	-	120890569,120980651	120902342,120980700	0.901639
upper_lobe_of_left_lung_male_adult_37_years	chr21	44962753	44962757	44962753	+	RAMPAGE_only	5	9	17	0.995163	3.577820	chr21	44961936	44963083	LINE|L1|L1ME2z	-	chr21	44958245	44976973	FAM207A|ENST00000479127.5	+	44958245,44960099,44967033,44973196,44976679	44958424,44960168,44967181,44973265,44976973	0.823529
upper_lobe_of_left_lung_male_adult_37_years	chr20	45762073	45762074	45762073	+	High_confidence	87	87	94	5.502668	4.966767	chr20	45759753	45763699	LTR|ERV1|HERVH-int	+	chr20	45762017	45767513	STRG.76629.1	+	45762017,45765157	45762327,45767513	0.968085
upper_lobe_of_left_lung_male_adult_37_years	chr8	18010623	18010657	18010656	+	RAMPAGE_only	3	3	14	0.819546	3.026987	chr8	18010700	18010985	SINE|Alu|AluSg	+	chr8	17972582	18027747	PCM1|ENST00000522275.5	+	17972582,17980590,17983232,17985446,17985958,17989858,17991541,17993482,18006262,18009546,18010608,18011236,18011666,18013963,18014583,18025360,18025543,18027636	17972687,17980755,17983289,17985619,17986087,17989979,17991700,17993619,18006397,18009744,18010668,18011366,18011827,18014036,18014840,18025453,18025658,18027747	0.785714
upper_lobe_of_left_lung_male_adult_37_years	chr7	87039858	87039870	87039869	-	RAMPAGE_only	11	11	19	1.112241	3.947703	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.842105
upper_lobe_of_left_lung_male_adult_37_years	chr19	58306086	58306162	58306141	+	High_confidence	8	8	21	1.229319	3.748995	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305376	58315202	STRG.75170.4	+	58305376,58306087,58314747	58305445,58312462,58315202	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr3	125594271	125594287	125594271	-	High_confidence	8	10	18	1.053702	3.454822	chr3	125594236	125594340	LINE|L2|L2c	-	chr3	125528857	125595090	OSBPL11|ENST00000296220.5	-	125528857,125531860,125538450,125547405,125552180,125560378,125563697,125567393,125576188,125578959,125579864,125582909,125594636	125530580,125532014,125538633,125547592,125552679,125560519,125563843,125567595,125576365,125579039,125580040,125582978,125595090	0.555556
upper_lobe_of_left_lung_male_adult_37_years	chr12	2878336	2878355	2878347	+	RAMPAGE_only	4	7	26	1.522014	4.103465	chr12	2878184	2878935	LINE|L2|L2b	-	chr12	2877222	2888007	RHNO1|ENST00000535978.5	+	2877222,2885282,2886977,2887910	2877282,2885534,2887111,2888007	0.923077
upper_lobe_of_left_lung_male_adult_37_years	chr6	32632907	32632908	32632907	+	RAMPAGE_only	10	10	10	0.585390	2.921928	chr6	32632878	32633021	LTR|ERVL-MaLR|MLT1H	+	chr6	32637356	32643652	HLA-DQA1|ENST00000343139.9	+	32637356,32641309,32641971,32642609,32642951	32637540,32641558,32642253,32642784,32643652	0.700000
upper_lobe_of_left_lung_male_adult_37_years	chr3	188947129	188947237	188947236	+	High_confidence	6	6	39	2.283022	4.722967	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.641026
upper_lobe_of_left_lung_male_adult_37_years	chrX	19589249	19589322	19589295	-	RAMPAGE_only	2	2	12	0.702468	3.418296	chrX	19588985	19589317	LINE|L2|L2c	+	chrX	19534006	19670998	SH3KBP1|ENST00000379716.5	-	19534006,19537716,19541924,19545921,19549973,19569102,19588642,19592066,19594948,19607937,19631863,19645399,19670861	19536458,19537780,19542193,19546050,19550083,19569188,19588802,19592147,19595000,19608045,19631958,19645475,19670998	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr1	110897856	110897876	110897875	+	RAMPAGE_only	24	24	39	2.283022	4.580023	chr1	110897898	110898002	SINE|MIR|MIR	+	chr1	110894308	110899851	CD53|ENST00000497404.1	+	110894308,110894959,110899123	110894401,110895055,110899851	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr1	108939644	108939645	108939644	-	High_confidence	8	8	8	0.468312	2.750000	chr1	108939309	108939608	SINE|Alu|AluY	-	chr1	108934657	108939041	STRG.3588.8	-	108934657,108937076,108938165	108934942,108937418,108939041	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr14	102370757	102370791	102370790	+	RAMPAGE_only	3	3	7	0.409773	2.521641	chr14	102370462	102370850	LINE|L2|L2b	-	chr14	102363078	102465671	TECPR2|ENST00000558678.1	+	102363078,102376649,102407337,102408487,102414635,102424978,102428249,102431795,102434234,102438021,102440435,102443646,102445805,102449628,102450559,102452393,102465140	102363116,102376940,102407466,102408619,102414793,102425291,102428382,102432128,102435211,102438205,102440609,102443827,102445947,102449869,102450649,102452627,102465671	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr1	147225865	147225866	147225865	-	High_confidence	8	8	8	0.468312	3.000000	chr1	147225754	147226210	LTR|ERV1|LTR2C	-	chr1	147213358	147225873	FMO5|ENST00000533848.2	-	147213358,147215753,147224894,147225728	147213470,147215942,147225066,147225873	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr7	99208111	99208119	99208111	-	High_confidence	3	3	7	0.409773	2.584963	chr7	99208098	99208244	SINE|Alu|AluSx3	-	chr7	99173573	99207506	KPNA7|ENST00000327442.6	-	99173573,99177919,99181882,99184928,99188299,99193018,99195069,99196083,99203105,99207400	99173794,99178066,99182065,99185162,99188563,99193101,99195338,99196166,99203240,99207506	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr11	64318707	64318740	64318733	+	High_confidence	8	8	24	1.404936	4.053509	chr11	64318595	64318908	SINE|Alu|AluSx	-	chr11	64318181	64321740	PRDX5|ENST00000352435.8	+	64318181,64319733,64320864,64321006,64321585	64318386,64319868,64320903,64321068,64321740	0.791667
upper_lobe_of_left_lung_male_adult_37_years	chr17	8056883	8056884	8056883	+	High_confidence	50	50	50	2.926951	4.968367	chr17	8056835	8057031	LTR|ERVK|LTR14	+	chr17	8056895	8057818	STRG.68491.1	+	8056895	8057818	0.940000
upper_lobe_of_left_lung_male_adult_37_years	chrX	113970788	113970801	113970788	+	High_confidence	7	7	24	1.404936	3.849224	chrX	113969537	113971421	LINE|L1|L1M4	-	chrX	113970812	113977212	STRG.81843.1	+	113970812,113975655,113976990	113970834,113975797,113977212	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr17	27531017	27531050	27531017	-	RAMPAGE_only	3	4	12	0.702468	3.251629	chr17	27530963	27531075	LINE|L1|L1ME4a	-	chr17	27526385	27527223	AC069366.1|ENST00000583159.1	-	27526385	27527223	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr13	110057302	110057310	110057309	-	High_confidence	20	21	38	2.224483	4.756619	chr13	110056667	110057319	LTR|ERV1|LTR58	+	chr13	110036129	110057316	STRG.59815.1	-	110036129,110056109,110057125	110036971,110056228,110057316	0.894737
upper_lobe_of_left_lung_male_adult_37_years	chr19	45450734	45450766	45450734	-	High_confidence	21	21	63	3.687958	5.557706	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr12	31959178	31959179	31959178	+	High_confidence	4	4	7	0.409773	2.521641	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959369	31992834	KIAA1551|ENST00000541981.5	+	31959369,31960776,31992377	31959491,31960871,31992834	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr2	181954491	181954526	181954512	+	High_confidence	32	33	96	5.619746	5.466593	chr2	181954454	181954584	DNA|hAT-Charlie|MER119	+	chr2	181954530	182117685	PPP1R1C|ENST00000490645.5	+	181954530,181962133,181975218,182061441,182063730,182117206	181954634,181962196,181975264,182061479,182063791,182117685	0.760417
upper_lobe_of_left_lung_male_adult_37_years	chr12	7502480	7502545	7502543	-	High_confidence	7	10	40	2.341561	5.028992	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.975000
upper_lobe_of_left_lung_male_adult_37_years	chr2	231072214	231072246	231072214	+	RAMPAGE_only	2	2	9	0.526851	2.750000	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr6	31587009	31587014	31587009	+	High_confidence	23	30	38	2.224483	4.540402	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.973684
upper_lobe_of_left_lung_male_adult_37_years	chr12	32601284	32601302	32601284	+	RAMPAGE_only	6	6	12	0.702468	3.095795	chr12	32601190	32601318	SINE|MIR|MIRb	-	chr12	32582378	32644751	FGD4|ENST00000494977.1	+	32582378,32598496,32600409,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624658,32624975,32625653,32633548,32637649,32638654,32640275,32642760,32644593	32582467,32598586,32600509,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32624751,32625068,32625779,32633689,32637855,32638795,32640453,32642842,32644751	0.916667
upper_lobe_of_left_lung_male_adult_37_years	chr1	1721636	1721637	1721636	-	High_confidence	9	9	13	0.761007	3.546594	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.769231
upper_lobe_of_left_lung_male_adult_37_years	chr5	54310427	54310462	54310461	-	High_confidence	5	5	18	1.053702	4.058814	chr5	54310446	54310538	DNA|TcMar-Tigger|Tigger15a	+	chr5	53886444	54310415	ARL15|ENST00000510591.6	-	53886444,54113201,54154579,54171783,54310294	53886713,54113410,54154639,54171928,54310415	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr4	85778522	85778532	85778531	+	High_confidence	11	11	25	1.463475	3.733661	chr4	85778413	85778594	SINE|MIR|MIR3	+	chr4	85778697	86002670	ARHGAP24|NM_001042669.1	+	85778697,85923647,85942065,85972035,85974887,85977569,85994582,86000478	85778965,85923770,85942273,85972168,85974961,85977691,85995657,86002670	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr3	133934059	133934120	133934059	-	RAMPAGE_only	34	39	76	4.448965	4.985033	chr3	133933665	133934080	DNA|TcMar-Tigger|Tigger19b	+	chr3	133928144	134030076	SLCO2A1|ENST00000310926.9	-	133928144,133935773,133938428,133942604,133945094,133947255,133948535,133948892,133951207,133953662,133954965,133973662,133979480,134029706	133934830,133935897,133938493,133942768,133945260,133947445,133948700,133948971,133951344,133953761,133955193,133973825,133979618,134030076	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr16	86490943	86490972	86490943	-	High_confidence	4	4	11	0.643929	3.095795	chr16	86490702	86490896	LINE|L1|L1MC5a	-	chr16	86477123	86490881	FENDRR|ENST00000600553.5	-	86477123,86490263,86490852	86477199,86490513,86490881	0.909091
upper_lobe_of_left_lung_male_adult_37_years	chr15	57516496	57516547	57516496	+	RAMPAGE_only	4	4	15	0.878085	3.521641	chr15	57516424	57516656	DNA|hAT-Charlie|MER58A	-	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.933333
upper_lobe_of_left_lung_male_adult_37_years	chr8	80485592	80485605	80485592	+	High_confidence	4	4	13	0.761007	3.392747	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.692308
upper_lobe_of_left_lung_male_adult_37_years	chr18	80148048	80148049	80148048	+	High_confidence	14	14	15	0.878085	3.324863	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148010	80178432	PARD6G-AS1|ENST00000589574.1	+	80148010,80175879,80178085	80148254,80175935,80178432	0.533333
upper_lobe_of_left_lung_male_adult_37_years	chr9	72363490	72363499	72363490	-	High_confidence	2	2	7	0.409773	2.584963	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr11	123060124	123060229	123060168	-	High_confidence	90	93	460	26.927947	5.263210	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123059155	123060223	HSPA8|ENST00000526862.1	-	123059155,123059472,123060115	123059261,123059762,123060223	0.530435
upper_lobe_of_left_lung_male_adult_37_years	chr3	98733165	98733185	98733165	+	High_confidence	2	2	8	0.468312	3.000000	chr3	98732871	98733255	LINE|L1|L1M4b	-	chr3	98733455	98795845	ST3GAL6|NM_001323366.1	+	98733455,98756368,98768429,98770878,98771120,98772812,98773919,98784944,98788035,98788325,98791840,98793674	98733591,98756540,98768529,98770956,98771190,98772916,98773983,98785040,98788222,98788463,98791993,98795845	0.625000
upper_lobe_of_left_lung_male_adult_37_years	chr1	169662003	169662004	169662003	+	High_confidence	7	7	7	0.409773	2.521641	chr1	169661033	169662412	LTR|ERV1|LTR12C	+	chr1	169662006	169853085	C1orf112|ENST00000498289.5	+	169662006,169683468,169683755,169783810,169784876,169798856,169800882,169802620,169803168,169804111,169806003,169807790,169821678,169823407,169827050,169827710,169829262,169830258,169830695,169832416,169836926,169842416,169843673,169847689,169849499,169850264,169850453,169851816,169852789	169662523,169683625,169683932,169783928,169784913,169798958,169800971,169802725,169803309,169804240,169806088,169807929,169821759,169823472,169827199,169827840,169829449,169830341,169830747,169832506,169837112,169842539,169843769,169847803,169849604,169850327,169850566,169851936,169853085	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr1	39310282	39310373	39310282	+	RAMPAGE_only	6	6	55	3.219646	4.926459	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr1	32637293	32637329	32637312	-	RAMPAGE_only	47	47	147	8.605235	5.419630	chr1	32637281	32637581	SINE|Alu|AluSx3	+	chr1	32621829	32634061	ZBTB8OS|ENST00000498691.5	-	32621829,32627507,32631826,32632207,32633644,32633950	32621948,32627544,32631879,32632345,32633727,32634061	0.925170
upper_lobe_of_left_lung_male_adult_37_years	chr2	111480260	111480261	111480260	-	High_confidence	4	4	7	0.409773	2.521641	chr2	111480041	111480456	LTR|ERVL-MaLR|MLT1C	-	chr2	111429322	111480261	MIR4435-2HG|ENST00000442293.5	-	111429322,111479906,111480168	111429620,111480061,111480261	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr2	170743955	170743956	170743955	-	RAMPAGE_only	10	10	10	0.585390	3.321928	chr2	170743777	170744187	LTR|ERVL|LTR52	-	chr2	170740587	170770753	STRG.11615.2	-	170740587,170770701	170741287,170770753	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr12	8697182	8697197	8697195	+	High_confidence	5	8	17	0.995163	3.577820	chr12	8697043	8697239	SINE|MIR|MIRc	-	chr12	8697176	8750029	RIMKLB|ENST00000541044.5	+	8697176,8713810,8749861	8697332,8714041,8750029	0.823529
upper_lobe_of_left_lung_male_adult_37_years	chr9	73080369	73080370	73080369	-	High_confidence	21	21	21	1.229319	4.106603	chr9	73080050	73080694	LTR|Gypsy|MamGypLTR1a	-	chr9	72924049	73080442	ALDH1A1|ENST00000419959.5	-	72924049,72925483,72927115,72928891,72930878,72940147,72952934,73080366	72924132,72925612,72927177,72929021,72931019,72940252,72953014,73080442	0.904762
upper_lobe_of_left_lung_male_adult_37_years	chr16	2331477	2331519	2331479	-	RAMPAGE_only	16	20	35	2.048866	4.650572	chr16	2331202	2331498	SINE|Alu|AluSz6	-	chr16	2289047	2340597	ABCA3|ENST00000563623.5	-	2289047,2292139,2295589,2297328,2297765,2298385,2299402,2300004,2303968,2308449,2317282,2317647,2319580,2323522,2324403,2326009,2326412,2328452,2329647,2340572	2289620,2292238,2295740,2297539,2297921,2298540,2299532,2300148,2304150,2308623,2317403,2317764,2319840,2323688,2324531,2326274,2326492,2328757,2329854,2340597	0.542857
upper_lobe_of_left_lung_male_adult_37_years	chr10	79559786	79559815	79559814	-	High_confidence	5	6	12	0.702468	3.459432	chr10	79559735	79559911	SINE|MIR|MIR3	+	chr10	79558884	79559834	SFTPA2|ENST00000492049.1	-	79558884,79559311	79559005,79559834	0.583333
upper_lobe_of_left_lung_male_adult_37_years	chr2	6866552	6866553	6866552	-	High_confidence	7	7	7	0.409773	2.807355	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr14	101731458	101731495	101731494	+	RAMPAGE_only	8	9	22	1.287858	3.363287	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.681818
upper_lobe_of_left_lung_male_adult_37_years	chr7	99410146	99410147	99410146	+	High_confidence	7	7	7	0.409773	2.521641	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99411063	99419612	BUD31|ENST00000456893.6	+	99411063,99417428,99419390	99411186,99417595,99419612	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr6	32182058	32182061	32182058	-	High_confidence	2	3	7	0.409773	2.807355	chr6	32181711	32182032	SINE|Alu|AluSp	-	chr6	32180967	32181635	AGER|ENST00000469940.5	-	32180967,32181350	32181239,32181635	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr2	24887163	24887185	24887184	-	RAMPAGE_only	11	11	19	1.112241	3.471354	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24841324	24878027	ADCY3|ENST00000433852.1	-	24841324,24841555,24842253,24872569,24877921	24841386,24841667,24842384,24872719,24878027	0.894737
upper_lobe_of_left_lung_male_adult_37_years	chr3	50387572	50387586	50387572	-	RAMPAGE_only	2	2	8	0.468312	2.807355	chr3	50387493	50387550	SINE|MIR|MIR3	-	chr3	50362798	50503423	CACNA2D2|ENST00000423994.6	-	50362798,50364887,50365074,50365355,50365632,50365809,50366010,50366266,50366577,50366830,50367010,50367393,50367641,50367811,50368137,50370319,50373064,50374736,50375643,50375808,50375962,50376113,50377466,50377731,50378007,50378283,50378914,50379091,50379431,50379724,50379967,50380747,50380994,50384195,50387567,50394108,50434312,50476117,50503217	50364806,50364976,50365184,50365482,50365688,50365862,50366163,50366338,50366628,50366919,50367109,50367497,50367704,50367902,50368235,50370380,50373085,50374813,50375705,50375880,50376034,50376188,50377541,50377803,50378097,50378333,50378993,50379199,50379590,50379824,50380018,50380805,50381126,50384337,50387612,50394168,50434429,50476199,50503423	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr17	59107194	59107266	59107194	+	High_confidence	14	14	37	2.165944	4.388790	chr17	59107089	59107281	DNA|hAT-Charlie|MER5A	-	chr17	59107204	59108400	STRG.70263.1	+	59107204	59108400	0.756757
upper_lobe_of_left_lung_male_adult_37_years	chrX	5726324	5726325	5726324	-	High_confidence	49	54	61	3.570880	4.404575	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.934426
upper_lobe_of_left_lung_male_adult_37_years	chr9	127642428	127642455	127642428	+	High_confidence	150	195	818	47.884915	6.525193	chr9	127642433	127642559	LINE|CR1|L3	+	chr9	127642342	127663258	STXBP1|ENST00000626333.1	+	127642342,127651602,127653714,127658374,127660029,127661101,127663204	127642563,127651652,127653796,127658451,127660108,127661205,127663258	0.871638
upper_lobe_of_left_lung_male_adult_37_years	chr16	2757883	2757915	2757883	+	High_confidence	5	5	14	0.819546	3.180833	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr9	121313977	121314021	121314002	+	RAMPAGE_only	20	21	111	6.497831	5.285582	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.990991
upper_lobe_of_left_lung_male_adult_37_years	chr9	2279228	2279289	2279234	-	High_confidence	61	64	233	13.639591	6.155494	chr9	2278958	2279810	LTR|ERV1|HERVH-int	+	chr9	2277933	2279278	STRG.42335.1	-	2277933	2279278	0.978541
upper_lobe_of_left_lung_male_adult_37_years	chr12	883795	883830	883829	+	RAMPAGE_only	8	10	44	2.575717	4.487730	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	753055	907956	STRG.53407.5	+	753055,813641,827041,830002,857160,859244,861012,862082,871264,878214,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846	754324,813814,827262,830160,857249,859464,861343,862270,871348,878361,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,907956	0.977273
upper_lobe_of_left_lung_male_adult_37_years	chr5	151687244	151687251	151687244	-	High_confidence	4	5	11	0.643929	2.845351	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151667473	151687246	STRG.27990.2	-	151667473,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687246	0.545455
upper_lobe_of_left_lung_male_adult_37_years	chr6	140898419	140898430	140898421	-	High_confidence	11	20	64	3.746497	5.368319	chr6	140898219	140898542	LTR|ERV1|MER61A	-	chr6	140845957	140898412	STRG.33015.1	-	140845957,140852818,140898187	140846304,140852924,140898412	0.734375
upper_lobe_of_left_lung_male_adult_37_years	chr8	85378112	85378113	85378112	-	High_confidence	22	23	23	1.346397	3.475273	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.956522
upper_lobe_of_left_lung_male_adult_37_years	chr9	125650409	125650430	125650422	-	High_confidence	4	4	20	1.170780	3.984184	chr9	125649959	125650542	LINE|L2|L2b	+	chr9	125444500	125650417	MAPKAP1|ENST00000420643.5	-	125444500,125467971,125484442,125543058,125559632,125585554,125599834,125650363	125444598,125468109,125484583,125543168,125559809,125585727,125599927,125650417	0.700000
upper_lobe_of_left_lung_male_adult_37_years	chr10	27983009	27983011	27983009	-	High_confidence	19	25	29	1.697631	4.254196	chr10	27982876	27983540	LTR|ERVL|LTR50	+	chr10	27812163	27983106	ARMC4|NM_001312689.1	-	27812163,27860624,27862433,27907662,27935009,27936725,27939896,27940562,27944221,27944815,27961567,27968922,27971107,27981465,27982928	27812625,27860846,27862622,27907777,27935252,27936880,27940007,27940805,27944431,27944962,27961715,27969018,27971313,27981582,27983106	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr4	102431170	102431180	102431170	-	High_confidence	2	2	7	0.409773	2.521641	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr3	151531406	151531419	151531418	-	RAMPAGE_only	3	3	9	0.526851	2.947703	chr3	151528406	151534796	LINE|L1|L1PA7	+	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.555556
upper_lobe_of_left_lung_male_adult_37_years	chr9	134373102	134373106	134373102	+	High_confidence	15	17	32	1.873249	4.607264	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134372267	134441111	STRG.45890.2	+	134372267,134401631,134408148,134417157,134421675,134429107,134431904,134434101,134436466	134373180,134401882,134409119,134417327,134421805,134429240,134431996,134434207,134441111	0.843750
upper_lobe_of_left_lung_male_adult_37_years	chr16	30445873	30445875	30445873	-	High_confidence	28	41	59	3.453802	4.874057	chr16	30445763	30445827	LTR|ERVL|LTR83	-	chr16	30443624	30445975	SEPHS2|NM_012248.3	-	30443624	30445975	0.949153
upper_lobe_of_left_lung_male_adult_37_years	chr19	58381340	58381361	58381351	+	High_confidence	2	2	8	0.468312	2.807355	chr19	58381391	58381508	DNA|hAT-Charlie|MER5B	+	chr19	58381382	58382140	STRG.75167.1	+	58381382	58382140	0.625000
upper_lobe_of_left_lung_male_adult_37_years	chr8	109581019	109581082	109581048	-	High_confidence	4	4	29	1.697631	4.349192	chr8	109580602	109581257	LINE|L2|L2c	+	chr8	109575974	109581058	SYBU|ENST00000527707.5	-	109575974,109577867,109579798,109580878	109576013,109578017,109580002,109581058	0.896552
upper_lobe_of_left_lung_male_adult_37_years	chr21	45563114	45563180	45563152	-	High_confidence	26	34	149	8.722313	5.119502	chr21	45562422	45564060	LINE|L1|L1MC3	+	chr21	45537777	45563186	STRG.78243.5	-	45537777,45544136,45544468,45562741	45538008,45544346,45544637,45563186	0.953020
upper_lobe_of_left_lung_male_adult_37_years	chrX	94700854	94700917	94700913	+	High_confidence	49	70	141	8.254001	4.960354	chrX	94700514	94701006	LTR|ERV1|HERVH-int	-	chrX	94700923	94946257	STRG.81397.1	+	94700923,94746874,94915658	94702166,94746970,94946257	0.992908
upper_lobe_of_left_lung_male_adult_37_years	chr1	245860512	245860513	245860512	-	RAMPAGE_only	7	7	7	0.409773	2.521641	chr1	245860451	245860544	DNA|hAT-Tip100|UCON132b	-	chr1	245749350	245858647	SMYD3|ENST00000483072.5	-	245749350,245858495	245749664,245858647	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr16	65053820	65053854	65053820	-	RAMPAGE_only	4	4	12	0.702468	3.188722	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.916667
upper_lobe_of_left_lung_male_adult_37_years	chr9	69123014	69123055	69123014	+	High_confidence	7	8	39	2.283022	4.374895	chr9	69122999	69123107	DNA|hAT-Charlie|MER5A1	+	chr9	69123047	69246746	TJP2|ENST00000647986.1	+	69123047,69151650,69185086,69212547,69216338,69218256,69220886,69225303,69226021,69227764,69227980,69229183,69230081,69234438,69236027,69236948,69237877,69238709,69239936,69246689	69123113,69151771,69185204,69212601,69216463,69218359,69221496,69225407,69226175,69227873,69228114,69229250,69230232,69234547,69236238,69237136,69237973,69238789,69240147,69246746	0.948718
upper_lobe_of_left_lung_male_adult_37_years	chr1	66416538	66416550	66416538	+	High_confidence	7	7	14	0.819546	3.378783	chr1	66416257	66416986	LINE|L1|L1MA7	-	chr1	66416545	66439629	STRG.2464.1	+	66416545,66416947,66439439	66416596,66417060,66439629	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr17	50271485	50271488	50271487	+	High_confidence	25	49	49	2.868412	4.841765	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr2	37147696	37147697	37147696	-	High_confidence	4	4	7	0.409773	2.584963	chr2	37147318	37147662	LINE|L1|L1PA4	-	chr2	37107272	37147806	EIF2AK2|ENST00000405334.5	-	37107272,37107473,37109193,37114730,37119958,37122505,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687	37107395,37107527,37109295,37114859,37120139,37122664,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147806	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr5	150507696	150507697	150507696	+	High_confidence	14	14	17	0.995163	3.219528	chr5	150507670	150507785	SINE|MIR|MIR3	-	chr5	150508111	150558211	NDST1|ENST00000261797.6	+	150508111,150520867,150527803,150532944,150534866,150535699,150539227,150540081,150541569,150542847,150545311,150548217,150549677,150551752,150553212	150508226,150521767,150528298,150533032,150535021,150535885,150539356,150540264,150541666,150542971,150545486,150548388,150549787,150551855,150558211	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr6	30542202	30542240	30542239	-	RAMPAGE_only	3	3	9	0.526851	2.750000	chr6	30541841	30543199	LINE|L2|L2c	+	chr6	30541376	30557174	GNL1|ENST00000376621.7	-	30541376,30546695,30547111,30547351,30552466,30553083,30553349,30554574,30554763,30555054,30555554,30556130	30546313,30546836,30547274,30547530,30552661,30553179,30553557,30554646,30554915,30555191,30555720,30557174	0.777778
upper_lobe_of_left_lung_male_adult_37_years	chr4	185287360	185287361	185287360	+	High_confidence	26	26	34	1.990327	4.427287	chr4	185287289	185287386	DNA|hAT-Charlie|MER5B	-	chr4	185287273	185362059	STRG.24116.6	+	185287273,185288011,185310634,185320732,185323527,185332594,185339378,185341975,185346536,185351444,185353484,185357670,185361923	185287556,185288082,185310816,185320864,185323800,185332759,185339510,185342116,185346650,185351609,185353602,185357737,185362059	0.911765
upper_lobe_of_left_lung_male_adult_37_years	chr9	34233920	34233921	34233920	+	RAMPAGE_only	18	18	20	1.170780	3.921928	chr9	34233518	34234003	LINE|L2|L2a	-	chr9	34220438	34252522	UBAP1|ENST00000359544.2	+	34220438,34220907,34234215,34241184,34249778,34250657,34251391	34220467,34220948,34234340,34242108,34249961,34250759,34252522	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr14	54452072	54452075	54452072	-	RAMPAGE_only	3	4	7	0.409773	2.584963	chr14	54451941	54452246	LTR|ERVL-MaLR|MLT1A0	-	chr14	54427424	54449412	STRG.60842.2	-	54427424,54430260,54432107,54436368,54449241	54427841,54430404,54432220,54436437,54449412	0.714286
upper_lobe_of_left_lung_male_adult_37_years	chr10	76319038	76319051	76319050	+	High_confidence	4	4	13	0.761007	3.392747	chr10	76318909	76319208	SINE|Alu|AluY	-	chr10	76318333	76560167	LRMDA|ENST00000496424.2	+	76318333,76324400,76557208	76319212,76324485,76560167	0.538462
upper_lobe_of_left_lung_male_adult_37_years	chr7	30756612	30756715	30756612	+	RAMPAGE_only	89	89	213	12.468810	5.388073	chr7	30756402	30756705	SINE|Alu|AluYg6	-	chr7	30752134	30757602	INMT|NM_001199219.1	+	30752134,30753733,30755421	30752304,30753938,30757602	0.995305
upper_lobe_of_left_lung_male_adult_37_years	chr5	67490662	67490719	67490662	-	High_confidence	478	478	755	44.196957	5.936853	chr5	67490503	67490858	LTR|ERVL-MaLR|THE1A	-	chr5	67453166	67490873	STRG.25397.3	-	67453166,67466872,67467905,67490579	67465327,67466938,67468053,67490873	0.900662
upper_lobe_of_left_lung_male_adult_37_years	chr6	28354122	28354142	28354137	-	High_confidence	4	4	16	0.936624	3.323231	chr6	28353864	28354395	LTR|ERVL|LTR18B	-	chr6	28329373	28354186	ZSCAN31|ENST00000446222.5	-	28329373,28336789,28353861,28354130	28329778,28336943,28353952,28354186	0.812500
upper_lobe_of_left_lung_male_adult_37_years	chr11	86938472	86938501	86938472	-	RAMPAGE_only	3	3	10	0.585390	2.921928	chr11	86938186	86938428	LINE|L2|L2a	-	chr11	86892213	86922104	AP001528.2|ENST00000528660.1	-	86892213,86896412,86921235	86892372,86896540,86922104	0.900000
upper_lobe_of_left_lung_male_adult_37_years	chr5	73078286	73078289	73078288	+	RAMPAGE_only	5	7	11	0.643929	3.459432	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	72956068	73088428	FCHO2|ENST00000512348.5	+	72956068,72968497,72989426,72990477,72990711,73006444,73017211,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	72956129,72968589,72989501,72990619,72990864,73006549,73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73088428	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr19	7642267	7642328	7642299	+	High_confidence	7	7	22	1.287858	3.442862	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7643274	STXBP2|ENST00000595861.1	+	7642245,7642428,7642765,7642982,7643164	7642333,7642536,7642823,7643048,7643274	0.772727
upper_lobe_of_left_lung_male_adult_37_years	chr11	108224074	108224075	108224074	+	High_confidence	17	17	24	1.404936	3.203243	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.833333
upper_lobe_of_left_lung_male_adult_37_years	chr7	107580245	107580267	107580264	+	High_confidence	640	642	2924	171.168083	6.494457	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580264	107618664	BCAP29|ENST00000445771.6	+	107580264,107580758,107583881,107593954,107595866,107600396,107613331,107613653,107618327	107580301,107580864,107583982,107594105,107596002,107600505,107613432,107613732,107618664	0.957592
upper_lobe_of_left_lung_male_adult_37_years	chr13	46374832	46374833	46374832	-	RAMPAGE_only	7	7	8	0.468312	2.807355	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46371940	46378645	RUBCNL|ENST00000439642.1	-	46371940,46377889,46378446	46372597,46378005,46378645	0.750000
upper_lobe_of_left_lung_male_adult_37_years	chr14	81427392	81427422	81427392	-	High_confidence	2	2	14	0.819546	3.180833	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.857143
upper_lobe_of_left_lung_male_adult_37_years	chr12	69353470	69353557	69353531	+	RAMPAGE_only	32	37	133	7.785689	4.610467	chr12	69353494	69353787	SINE|Alu|AluY	-	chr12	69348353	69354233	LYZ|NM_000239.2	+	69348353,69350107,69352219,69353152	69348544,69350272,69352298,69354233	0.977444
upper_lobe_of_left_lung_male_adult_37_years	chr7	6590237	6590270	6590248	+	High_confidence	5	6	25	1.463475	4.088779	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.560000
upper_lobe_of_left_lung_male_adult_37_years	chr19	49086462	49086527	49086526	+	High_confidence	4	4	18	1.053702	3.572469	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.944444
upper_lobe_of_left_lung_male_adult_37_years	chr7	75956400	75956431	75956400	+	RAMPAGE_only	3	3	10	0.585390	2.846439	chr7	75956434	75956606	SINE|MIR|MIRb	+	chr7	75954075	75986599	POR|ENST00000447222.5	+	75954075,75972412,75979450,75980338,75981047,75981516,75982223,75983519,75983737,75984776,75985057,75985578,75985922,75986158,75986316	75954180,75972461,75979579,75980722,75981172,75981606,75982322,75983636,75983856,75984958,75985207,75985849,75986068,75986241,75986599	0.900000
upper_lobe_of_left_lung_male_adult_37_years	chr11	62405111	62405118	62405117	+	High_confidence	4	4	8	0.468312	2.500000	chr11	62404832	62405355	LINE|L2|L2a	-	chr11	62405102	62423195	SCGB1A1|ENST00000534397.5	+	62405102,62416563,62422220,62423058	62405169,62416637,62422408,62423195	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chrX	118727191	118727209	118727191	+	High_confidence	3	3	6	0.351234	2.584963	chrX	118727146	118727201	SINE|MIR|MIRc	-	chrX	118727571	118794539	IL13RA1|ENST00000371666.7	+	118727571,118741016,118746953,118749657,118758054,118761137,118766529,118766843,118773878,118776426,118791761	118727726,118741156,118747092,118749778,118758242,118761289,118766577,118766976,118773975,118776511,118794539	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr4	3929573	3929604	3929598	-	High_confidence	2	2	9	0.526851	3.000000	chr4	3927854	3930775	LTR|ERV1|HERVH-int	+	chr4	3921559	3929569	STRG.20094.1	-	3921559,3924070,3929541	3921782,3924267,3929569	0.666667
upper_lobe_of_left_lung_male_adult_37_years	chr11	118720238	118720239	118720238	+	High_confidence	40	41	51	2.985490	4.109109	chr11	118719339	118721014	LTR|ERV1|HERVH-int	-	chr11	118720112	118727696	STRG.52942.1	+	118720112	118727696	0.823529
upper_lobe_of_left_lung_male_adult_37_years	chr17	35085070	35085071	35085070	-	RAMPAGE_only	8	8	10	0.585390	3.121928	chr17	35085029	35085098	DNA|hAT-Charlie|MER5A	+	chr17	35021505	35088835	RFFL|ENST00000414419.6	-	35021505,35026373,35088740	35021781,35026561,35088835	0.600000
upper_lobe_of_left_lung_male_adult_37_years	chr5	1579474	1579514	1579513	-	RAMPAGE_only	3	3	9	0.526851	2.725481	chr5	1578346	1579846	LTR|ERVK|HERVK9-int	-	chr5	1571951	1594620	STRG.24279.6	-	1571951,1576178,1593112,1594394	1574295,1589365,1593284,1594620	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr12	8567937	8567939	8567937	-	High_confidence	5	10	13	0.761007	3.251629	chr12	8567561	8568746	LTR|ERV1|MER52C	-	chr12	8551684	8567931	STRG.53895.1	-	8551684,8567493	8552140,8567931	0.769231
upper_lobe_of_left_lung_male_adult_37_years	chr2	133420911	133420917	133420911	-	High_confidence	3	3	8	0.468312	2.521641	chr2	133420677	133420884	SINE|MIR|MIRb	-	chr2	132671798	133421796	STRG.10730.1	-	132671798,132725626,132728815,132731736,132773815,132781051,132781939,132790022,132796627,132860491,132868935,132878847,132963719,132994151,133129977,133213715,133303036,133421674	132673305,132725759,132728952,132732051,132773894,132781229,132785718,132790205,132796729,132860611,132868974,132878916,132963869,132994239,133130111,133213779,133303110,133421796	0.625000
upper_lobe_of_left_lung_male_adult_37_years	chrX	94702191	94702250	94702249	-	High_confidence	7	8	32	1.873249	4.440224	chrX	94701137	94704174	LTR|ERV1|HERVH-int	-	chrX	94688676	94702457	STRG.81393.1	-	94688676,94702006	94698009,94702457	0.656250
upper_lobe_of_left_lung_male_adult_37_years	chr3	108165430	108165488	108165465	-	RAMPAGE_only	5	5	20	1.170780	3.826875	chr3	108165378	108165542	DNA|hAT-Ac|OldhAT1	+	chr3	108160811	108222570	IFT57|NM_018010.3	-	108160811,108163662,108165430,108166853,108167792,108191520,108206627,108213930,108218534,108219409,108222110	108162655,108163729,108165493,108166985,108167864,108191643,108206696,108214021,108218653,108219572,108222570	0.850000
upper_lobe_of_left_lung_male_adult_37_years	chr11	64242486	64242547	64242546	+	High_confidence	8	8	31	1.814709	4.478232	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr19	48753676	48753677	48753676	-	High_confidence	7	7	7	0.409773	2.521641	chr19	48753519	48753902	LTR|ERVK|LTR13A	-	chr19	48748010	48753660	FUT1|ENST00000645652.1	-	48748010,48752489,48752891,48753324,48753647	48751283,48752725,48753122,48753563,48753660	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr10	122127024	122127025	122127024	+	High_confidence	2189	2204	2646	154.894236	7.714532	chr10	122126847	122127220	LTR|ERVL-MaLR|MLT1A0	+	chr10	122127019	122226480	STRG.49433.6	+	122127019,122132608,122143571,122195039,122210396,122215390,122216626,122224725,122226365	122127142,122132734,122143706,122195176,122211708,122215451,122216828,122224787,122226480	0.614512
upper_lobe_of_left_lung_male_adult_37_years	chr10	79611493	79611527	79611495	+	High_confidence	5	9	19	1.112241	3.892407	chr10	79611409	79611573	SINE|MIR|MIR3	-	chr10	79610954	79613840	SFTPA1|ENST00000439264.1	+	79610954,79611318,79611802,79612311,79613188,79613736	79610982,79611389,79611997,79612431,79613266,79613840	0.631579
upper_lobe_of_left_lung_male_adult_37_years	chr12	79543499	79543504	79543499	-	High_confidence	4	4	11	0.643929	3.277613	chr12	79543407	79543903	LTR|ERV1|HERVH-int	+	chr12	79390173	79543613	STRG.56348.2	-	79390173,79542902	79393925,79543613	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr22	44181183	44181184	44181183	+	High_confidence	8	8	12	0.702468	3.251629	chr22	44181132	44181213	LINE|L2|L2a	-	chr22	44181335	44206622	PARVG|ENST00000475485.6	+	44181335,44181741,44183317,44185807,44186576,44189113,44190550,44192048,44196156,44196346,44198620,44205756,44206316	44181370,44181917,44183408,44185872,44187878,44189254,44190666,44192129,44196213,44196415,44198722,44205829,44206622	0.833333
upper_lobe_of_left_lung_male_adult_37_years	chr5	77088137	77088175	77088137	+	High_confidence	2	3	10	0.585390	3.169925	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088008	77142094	ZBED3-AS1|ENST00000646594.1	+	77088008,77088744,77089345,77098654,77118319,77139260	77088472,77088799,77089403,77098747,77118521,77142094	0.500000
upper_lobe_of_left_lung_male_adult_37_years	chr19	51795150	51795187	51795186	+	High_confidence	10	10	55	3.219646	5.099364	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.909091
upper_lobe_of_left_lung_male_adult_37_years	chr7	603490	603519	603498	+	High_confidence	4	4	16	0.936624	3.875000	chr7	603435	603558	LINE|L2|L2c	+	chr7	603397	608502	LOC101926963|NR_110055.1	+	603397,607864	603616,608502	1.000000
upper_lobe_of_left_lung_male_adult_37_years	chr10	80176131	80176132	80176131	-	RAMPAGE_only	6	6	9	0.526851	2.750000	chr10	80176083	80176485	LINE|L1|L1ME4b	+	chr10	80169079	80173021	ANXA11|ENST00000437799.1	-	80169079,80170799,80172806	80169358,80170915,80173021	0.888889
upper_lobe_of_left_lung_male_adult_37_years	chr2	182928788	182928789	182928788	-	RAMPAGE_only	6	6	7	0.409773	2.584963	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.571429
upper_lobe_of_left_lung_male_adult_37_years	chr11	65441833	65441843	65441842	+	RAMPAGE_only	13	13	32	1.873249	4.081728	chr11	65441504	65441864	LINE|L1|L1MB7	-	chr11	65422797	65445540	NEAT1|ENST00000501122.2	+	65422797	65445540	0.937500
upper_lobe_of_left_lung_male_adult_37_years	chr7	131510329	131510330	131510329	-	High_confidence	6	6	6	0.351234	2.584963	chr7	131510213	131510511	SINE|Alu|AluSx3	+	chr7	131509068	131510898	PODXL|ENST00000482581.1	-	131509068,131510827	131509585,131510898	0.833333
upper_lobe_of_left_lung_male_adult_37_years	chr3	138593997	138594028	138593997	-	High_confidence	24	26	54	3.161107	4.327188	chr3	138593850	138594045	SINE|MIR|MIRb	-	chr3	138572858	138594129	CEP70|ENST00000485115.1	-	138572858,138591853,138593708	138572932,138591956,138594129	0.907407
upper_lobe_of_left_lung_male_adult_37_years	chr8	12522797	12522814	12522810	+	RAMPAGE_only	12	12	42	2.458639	4.171474	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12563985	12567706	STRG.39096.2	+	12563985	12567706	0.880952
upper_lobe_of_left_lung_male_adult_37_years	chr2	231270420	231270439	231270420	+	High_confidence	5	6	12	0.702468	3.418296	chr2	231270419	231270687	LINE|L1|HAL1	-	chr2	231270742	231291435	ARMC9|ENST00000481520.1	+	231270742,231272954,231276635,231278381,231282058,231291352	231271072,231273078,231276775,231278458,231282133,231291435	0.583333
upper_lobe_of_left_lung_male_adult_37_years	chr3	183163620	183163621	183163620	-	High_confidence	699	753	799	46.772674	6.452334	chr3	183163266	183163587	SINE|Alu|AluSc5	-	chr3	183153900	183163839	LAMP3|ENST00000476015.1	-	183153900,183162606,183163619	183154391,183162730,183163839	0.994994
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	141332616	141332617	141332616	-	High_confidence	37	38	39	1.210078	3.802991	chr4	141332214	141333759	LTR|ERV1|LTR12C	-	chr4	141321123	141332617	LOC100507639|NR_121625.1	-	141321123,141323421,141324801,141332158	141321381,141323618,141324912,141332617	0.897436
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	31530862	31530878	31530877	-	RAMPAGE_only	2	2	9	0.279249	2.750000	chr5	31530667	31530954	LINE|L2|L2c	+	chr5	31400496	31532061	DROSHA|ENST00000511367.6	-	31400496,31405676,31406852,31409055,31409249,31410745,31421271,31422786,31424426,31429474,31431575,31435764,31437238,31448546,31449280,31451532,31464235,31466181,31467938,31472062,31483553,31484880,31486490,31493206,31495285,31504554,31508620,31511034,31514987,31515453,31521122,31526078,31529039,31530797,31531989	31401562,31405723,31406945,31409159,31409332,31410887,31421377,31422944,31424471,31429545,31431678,31435864,31437298,31448607,31449419,31451640,31464343,31466281,31468063,31472232,31483628,31484962,31486562,31493293,31495372,31504635,31508775,31511176,31515219,31515564,31521215,31526912,31529105,31530924,31532061	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	30728989	30728990	30728989	+	RAMPAGE_only	6	6	9	0.279249	2.503258	chr8	30728580	30729079	LTR|ERV1|LTR2C	+	chr8	30732246	30766470	UBXN8|ENST00000620074.4	+	30732246,30744327,30751395,30753034,30754664,30756764,30760887,30763272,30766226	30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763347,30766470	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	68624678	68624705	68624678	+	RAMPAGE_only	4	4	17	0.527470	3.852169	chr12	68624506	68624834	SINE|Alu|AluSz	+	chr12	68610924	68654190	RAP1B|ENST00000534899.5	+	68610924,68624674,68648698,68650399,68651994,68654111	68611043,68624873,68648781,68650468,68652051,68654190	0.529412
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	102947723	102947731	102947730	-	RAMPAGE_only	3	4	10	0.310276	2.725481	chr14	102947628	102947733	DNA|hAT-Ac|OldhAT1	+	chr14	102943812	102945724	CDC42BPB|ENST00000559245.1	-	102943812,102945661	102944487,102945724	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	118835953	118835954	118835953	-	High_confidence	21	23	29	0.899802	3.661933	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	0.931034
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	101019099	101019121	101019120	+	RAMPAGE_only	4	4	11	0.341304	3.321928	chr2	101017793	101019727	DNA|hAT-Charlie|Charlie17	-	chr2	101002282	101019728	RPL31|ENST00000409028.8	+	101002282,101002701,101004157,101005958,101018997	101002315,101002808,101004283,101006071,101019728	0.818182
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	74230140	74230150	74230149	-	RAMPAGE_only	4	5	8	0.248221	2.807355	chrX	74228865	74230951	LINE|L1|L1MB7	+	chrX	74209975	74292529	MSTRG.24205.12	-	74209975,74218620,74240617,74243129,74280930,74281701,74292168	74218577,74240557,74242520,74280494,74281085,74281848,74292529	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	11196112	11196223	11196112	-	High_confidence	27	31	173	5.367783	5.823580	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.947977
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	11225885	11225913	11225885	-	High_confidence	3	5	10	0.310276	2.921928	chr3	11225671	11225848	SINE|Alu|AluSx	-	chr3	11193438	11225877	AC083855.2|ENST00000648436.1	-	11193438,11194992,11207241,11225699	11193887,11195204,11207398,11225877	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73841948	73842000	73841948	-	High_confidence	7	8	34	1.054940	4.253212	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.823529
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	102449836	102449846	102449836	+	High_confidence	6	6	18	0.558498	3.292770	chr10	102449641	102449961	SINE|Alu|AluJb	-	chr10	102449830	102456297	RPARP-AS1|ENST00000473970.2	+	102449830,102450186,102455336	102450022,102450330,102456297	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	60442023	60442037	60442023	+	RAMPAGE_only	6	6	12	0.372332	3.418296	chr13	60441716	60442080	LTR|ERVL|MER68B	-	chr13	60434048	60485899	TDRD3|ENST00000377882.7	+	60434048,60439687,60444686,60460379,60467237,60483774,60485798	60434085,60439772,60444748,60460540,60467379,60483846,60485899	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	120143500	120143501	120143500	+	RAMPAGE_only	43	44	45	1.396244	4.450196	chrX	120143042	120143628	LTR|ERV1|LTR10C	+	chrX	120036235	120146854	RHOXF1-AS1|ENST00000553843.5	+	120036235,120120851,120138997,120143722,120145637	120036532,120121139,120139119,120143900,120146854	0.977778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	58312326	58312350	58312326	+	RAMPAGE_only	2	2	6	0.186166	2.584963	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	40982338	40982420	40982419	+	RAMPAGE_only	7	13	52	1.613438	4.959395	chr5	40982142	40982442	SINE|Alu|AluSx1	-	chr5	40909496	40982939	C7|NM_000587.2	+	40909496,40928579,40931063,40934324,40936337,40937551,40945197,40947601,40949903,40955386,40958032,40959448,40962084,40964740,40972402,40976749,40979724,40981391	40909616,40928635,40931139,40934466,40936485,40937690,40945368,40947845,40950014,40955553,40958261,40959620,40962172,40964873,40972594,40976840,40979909,40982939	0.942308
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	63626326	63626331	63626330	-	RAMPAGE_only	6	7	11	0.341304	3.027169	chr11	63626098	63626400	SINE|Alu|AluSx	+	chr11	63624086	63671612	ATL3|ENST00000398868.7	-	63624086,63631039,63633025,63635533,63636206,63643356,63644168,63646506,63651935,63652470,63658760,63659037,63671289	63629405,63631471,63633097,63635590,63636334,63643495,63644261,63646563,63651986,63652575,63658904,63659252,63671612	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	37108248	37108249	37108248	+	High_confidence	4	4	7	0.217194	2.807355	chr21	37108131	37108256	LINE|L1|L1ME4a	+	chr21	37107737	37203112	TTC3|ENST00000476784.5	+	37107737,37121816,37122982,37124618,37126079,37129002,37132681,37135379,37138633,37140560,37144524,37147480,37148545,37150077,37150819,37151892,37152950,37156654,37159698,37160801,37161989,37164050,37165549,37167554,37172594,37182773,37185705,37187048,37188494,37191333,37192111,37195674,37197569,37197881,37200231,37201439	37108446,37121979,37123028,37124742,37126143,37129063,37132766,37135514,37138714,37140673,37144645,37147603,37148647,37150170,37150884,37152029,37153277,37156906,37159745,37160858,37162063,37164215,37166615,37167620,37172744,37182913,37185774,37187145,37188595,37191424,37192213,37196036,37197696,37198025,37200324,37203112	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	77736987	77737051	77736987	-	High_confidence	9	9	44	1.365216	4.202546	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.931818
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	47780106	47780108	47780107	+	High_confidence	8	12	15	0.465415	3.182006	chr19	47780125	47780257	SINE|Alu|AluSx	+	chr19	47780387	47784648	SELENOW|ENST00000598956.5	+	47780387,47780863,47781107,47781289,47784289	47780749,47781000,47781182,47781388,47784648	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	10916727	10916739	10916736	+	RAMPAGE_only	3	3	8	0.248221	2.521641	chr19	10916771	10916976	SINE|MIR|MIR	+	chr19	10918985	10920870	CARM1|ENST00000586508.1	+	10918985,10919876,10920435,10920658,10920833	10919680,10919966,10920573,10920748,10920870	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	68180133	68180143	68180133	-	High_confidence	3	3	10	0.310276	2.947703	chr11	68180123	68180214	SINE|MIR|MIRc	+	chr11	68171118	68180165	KMT5B|ENST00000323599.10	-	68171118,68171231,68171542,68173803,68174087,68175017,68180131	68171151,68171251,68171709,68173913,68174210,68175183,68180165	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	3536496	3536516	3536515	-	High_confidence	10	16	40	1.241106	4.571928	chr2	3536383	3536708	LTR|ERV1|MER31A	+	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	29550805	29550827	29550805	-	RAMPAGE_only	2	2	9	0.279249	2.947703	chr22	29550799	29551148	DNA|hAT-Charlie|MER113	+	chr22	29508330	29549157	THOC5|ENST00000358079.8	-	29508330,29511105,29512020,29517028,29517262,29519005,29520007,29520997,29525837,29528077,29528425,29528936,29531830,29536623,29539329,29542858,29543414,29544459,29549051	29508520,29511296,29512136,29517116,29517366,29519120,29520104,29521099,29525946,29528177,29528466,29529239,29531963,29536738,29539476,29542956,29543542,29544603,29549157	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	3831048	3831052	3831048	-	RAMPAGE_only	3	3	9	0.279249	2.750000	chr1	3830948	3831012	LINE|L2|L2a	-	chr1	3812080	3857199	CEP104|ENST00000378230.7	-	3812080,3816279,3823173,3823423,3825757,3826369,3826707,3829265,3829790,3831045,3833861,3834924,3836494,3837291,3838963,3839607,3844906,3845288,3847474,3848607,3852294,3856888	3815517,3816370,3823241,3823562,3825866,3826436,3826744,3829373,3829997,3831222,3834035,3835092,3836692,3837519,3839119,3839776,3844983,3845351,3847613,3848781,3852421,3857199	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	2589120	2589125	2589120	+	RAMPAGE_only	8	8	14	0.434387	3.546594	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	0.928571
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	15757791	15757815	15757814	+	RAMPAGE_only	2	3	8	0.248221	2.750000	chr8	15757770	15757946	SINE|MIR|MIRc	+	chr8	15540278	15764629	TUSC3|ENST00000510836.5	+	15540278,15623079,15650696,15659506,15662155,15673746,15743537,15764202	15540568,15623249,15650814,15659647,15662296,15673836,15743612,15764629	0.625000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	189309856	189309889	189309866	+	High_confidence	12	12	26	0.806719	4.001629	chr3	189309787	189309871	LINE|RTE-BovB|MamRTE1	+	chr3	189309893	189315595	TPRG1|ENST00000481307.1	+	189309893,189310385,189315492	189310177,189310539,189315595	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	229232042	229232054	229232053	-	High_confidence	4	4	10	0.310276	2.503258	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	54630740	54630761	54630740	+	RAMPAGE_only	5	5	11	0.341304	3.095795	chr1	54630775	54633691	LTR|ERVK|HERVK9-int	+	chr1	54548227	54639192	ACOT11|ENST00000371316.3	+	54548227,54584654,54585834,54592545,54593940,54594555,54597258,54599295,54601268,54602668,54603870,54604345,54605075,54607133,54607941,54630733,54634687	54548342,54584862,54585904,54592606,54594039,54594691,54597415,54599415,54601413,54602724,54603937,54604429,54605209,54607265,54608068,54630886,54639192	0.909091
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	7905925	7905971	7905925	-	High_confidence	4	5	23	0.713636	4.523562	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.652174
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	122064332	122064376	122064375	+	RAMPAGE_only	74	74	203	6.298612	5.873279	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.615764
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	123179187	123179221	123179220	-	RAMPAGE_only	10	10	17	0.527470	3.852169	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.941176
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	147832418	147832420	147832419	-	High_confidence	6	10	15	0.465415	3.664498	chr5	147832344	147832848	LTR|ERVL|LTR40a	+	chr5	147824567	147831786	SPINK1|ENST00000296695.9	-	147824567,147828021,147829598,147831522	147824706,147828128,147829630,147831786	0.866667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	143039246	143039267	143039266	+	High_confidence	13	15	65	2.016797	4.518146	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.723077
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	31587201	31587275	31587274	+	High_confidence	24	24	111	3.444069	4.924295	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587254	31588757	LST1|ENST00000460834.1	+	31587254,31587815,31588517	31587318,31587966,31588757	0.747748
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	45414430	45414431	45414430	-	High_confidence	4	4	7	0.217194	2.521641	chr19	45414193	45414494	SINE|Alu|AluSx1	+	chr19	45409545	45414616	ERCC1|ENST00000588738.5	-	45409545,45413676,45413962,45414351	45409725,45413745,45414034,45414616	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	52429456	52429477	52429456	-	High_confidence	4	4	12	0.372332	2.918296	chr13	52429311	52429618	LINE|L2|L2b	+	chr13	52425769	52429367	VPS36|ENST00000492650.1	-	52425769,52426988,52427186,52429235	52426066,52427066,52427219,52429367	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	24580612	24580623	24580612	+	High_confidence	7	9	18	0.558498	3.058814	chr13	24579164	24580730	LINE|L1|L1PA15	-	chr13	24580207	24597676	TPTE2P6|NR_002815.2	+	24580207,24583501,24586461,24587225,24589255,24594270,24595788,24597101,24597386	24581722,24583582,24586794,24587326,24589311,24594363,24595859,24597277,24597676	0.944444
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	74605025	74605039	74605038	+	RAMPAGE_only	5	5	9	0.279249	2.725481	chr18	74604824	74605092	LTR|ERVL?|LTR87	+	chr18	74597869	74804627	ZNF407|ENST00000582337.5	+	74597869,74630966,74641007,74781427,74803963	74597937,74635706,74641122,74781502,74804627	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	62894572	62894573	62894572	+	RAMPAGE_only	5	5	8	0.248221	2.807355	chr15	62894534	62894826	SINE|Alu|AluSx3	+	chr15	62895811	62899543	AC103740.2|ENST00000557900.1	+	62895811,62898650	62896143,62899543	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	43013375	43013393	43013392	-	High_confidence	8	8	14	0.434387	3.807355	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	62030098	62030123	62030121	+	RAMPAGE_only	3	5	16	0.496442	3.875000	chr2	62029832	62030441	LTR|ERV1|MER39B	-	chr2	62000978	62146914	COMMD1|ENST00000458337.5	+	62000978,62135830,62146297	62000982,62135979,62146914	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	100313433	100313457	100313456	-	RAMPAGE_only	7	7	18	0.558498	3.734522	chr8	100313122	100313809	LINE|L2|L2b	-	chr8	100257341	100310327	RNF19A|ENST00000341084.6	-	100257341,100259853,100261541,100264033,100264670,100268784,100269868,100274952,100287500,100309866	100259246,100259997,100261755,100264195,100264785,100268947,100270013,100275161,100288267,100310327	0.611111
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	20676161	20676162	20676161	-	High_confidence	8	9	11	0.341304	3.277613	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	37298760	37298783	37298760	+	RAMPAGE_only	6	7	11	0.341304	3.095795	chr20	37298741	37299041	SINE|Alu|AluJb	-	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	2881285	2881286	2881285	-	High_confidence	7	7	7	0.217194	2.807355	chr6	2876870	2882853	LINE|L1|L1PBa1	+	chr6	2854656	2881407	SERPINB9P1|ENST00000545177.4	-	2854656,2857910,2876292,2881284	2855690,2857995,2876425,2881407	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	54208557	54208558	54208557	+	High_confidence	6	6	6	0.186166	2.584963	chr20	54208550	54208675	SINE|MIR|MIR3	-	chr20	54208311	54219203	PFDN4|ENST00000487129.1	+	54208311,54208834,54214350,54215299,54219018	54208558,54208915,54214458,54215440,54219203	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	35713423	35713429	35713423	-	High_confidence	5	5	10	0.310276	3.121928	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	17910367	17910378	17910377	-	High_confidence	5	5	10	0.310276	2.947703	chr8	17908095	17912373	LTR|ERVK|HERVK-int	-	chr8	17864379	17910365	FGL1|ENST00000398056.6	-	17864379,17868547,17868915,17874018,17874361,17881998,17885491,17895446,17896169,17909884	17864751,17868735,17869004,17874116,17874521,17882179,17885571,17895517,17896416,17910365	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	50756861	50756882	50756881	+	High_confidence	3	3	10	0.310276	2.921928	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50756947	50789186	RPL23AP82|ENST00000496652.5	+	50756947,50783119,50785172,50788749	50757326,50783294,50785293,50789186	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	42084500	42084594	42084525	-	RAMPAGE_only	5	5	36	1.116995	4.493150	chr12	42084514	42084673	SINE|MIR|MIRc	-	chr12	42081844	42144871	GXYLT1|NM_173601.1	-	42081844,42097441,42097909,42105817,42109565,42118999,42129758,42144425	42087947,42097614,42098033,42106069,42109691,42119171,42129851,42144871	0.972222
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	57746128	57746129	57746128	+	High_confidence	9	9	9	0.279249	3.169925	chr8	57745956	57746299	LTR|ERVL-MaLR|MLT1H1	+	chr8	57746148	57750199	AC104051.2|ENST00000518934.1	+	57746148,57747940	57746350,57750199	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	179839929	179839962	179839953	-	RAMPAGE_only	4	4	13	0.403359	2.873141	chr5	179839851	179839977	SINE|Alu|AluJo	+	chr5	179837275	179858808	MRNIP|ENST00000518219.5	-	179837275,179841906,179844151,179847977,179853377,179858730	179840959,179842064,179844227,179848066,179853437,179858808	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	85773409	85773442	85773409	-	RAMPAGE_only	2	2	7	0.217194	2.807355	chr11	85773277	85773644	LINE|L2|L2c	+	chr11	85694220	85758069	SYTL2|NM_001162951.2	-	85694220,85696182,85697978,85700514,85704857,85707428,85709330,85711112,85714412,85718789,85720857,85727895,85733938,85736500,85737574,85745636,85748271,85757624	85695340,85696388,85698078,85700593,85705028,85707531,85709500,85711232,85714507,85718843,85720959,85727967,85734742,85736612,85737656,85745772,85748423,85758069	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	128369553	128369562	128369561	+	RAMPAGE_only	6	6	17	0.527470	3.734522	chr3	128369587	128369654	SINE|MIR|MIRb	+	chr3	128153500	128408642	EEFSEC|ENST00000483457.1	+	128153500,128246835,128262127,128341232,128408068	128153823,128247043,128262224,128341889,128408642	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	110440313	110440374	110440319	-	RAMPAGE_only	11	13	68	2.109880	5.554159	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.941176
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	26551837	26551839	26551838	+	High_confidence	6	8	10	0.310276	2.921928	chr7	26551639	26551841	SINE|MIR|MIR	-	chr7	26551838	26555114	AC004947.1|ENST00000457000.1	+	26551838,26554808,26555021	26552210,26554919,26555114	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100922255	100922294	100922293	+	RAMPAGE_only	6	6	14	0.434387	3.238901	chr14	100921326	100923195	LINE|L1|L1PB1	-	chr14	100906043	100947076	MSTRG.7387.63	+	100906043,100906935,100931913,100938879,100940364,100942761,100944808,100947033	100906163,100931545,100937488,100938956,100940450,100942838,100944925,100947076	0.928571
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	2727243	2727276	2727263	+	High_confidence	6	6	19	0.589525	3.366091	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.631579
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	10362458	10362460	10362459	+	RAMPAGE_only	5	8	10	0.310276	2.921928	chr12	10362140	10362659	LTR|ERV1|LTR10C	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.700000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	109878998	109878999	109878998	+	RAMPAGE_only	6	7	8	0.248221	2.807355	chr12	109878962	109879076	SINE|MIR|MIRb	-	chr12	109900263	109905027	TCHP|ENST00000537218.1	+	109900263,109903026,109903936,109904736	109900426,109903214,109904147,109905027	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	75025217	75025244	75025243	-	RAMPAGE_only	3	4	9	0.279249	2.750000	chr14	75025064	75026121	LINE|L2|L2c	+	chr14	75015486	75023018	MLH3|ENST00000554697.5	-	75015486,75017007,75018828,75022813,75022994	75015862,75017201,75018980,75022892,75023018	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	61136683	61136700	61136683	+	RAMPAGE_only	2	2	8	0.248221	2.521641	chr1	61136729	61136989	SINE|MIR|MIRb	+	chr1	61077273	61257788	MSTRG.803.3	+	61077273,61088148,61126923	61077628,61126888,61257788	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	50757124	50757144	50757143	+	High_confidence	4	4	18	0.558498	3.690117	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	55982724	55982753	55982731	-	High_confidence	4	5	20	0.620553	3.826875	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.950000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	128200164	128200174	128200164	-	RAMPAGE_only	2	2	6	0.186166	2.584963	chr9	128200147	128200299	LINE|L1|L1ME4a	+	chr9	128196846	128204222	CIZ1|ENST00000634501.1	-	128196846,128199919,128202763,128204185	128198367,128200184,128202936,128204222	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	23636638	23636701	23636662	+	High_confidence	6	6	37	1.148023	4.760067	chr14	23636652	23637705	LTR|ERV1|HERV9NC-int	+	chr14	23636372	23645295	MSTRG.6659.6	+	23636372,23638826,23639178,23639793,23643151,23644110,23644408,23644826,23645141	23638417,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645295	0.810811
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	61955384	61955418	61955384	-	RAMPAGE_only	6	6	15	0.465415	3.506891	chr17	61954857	61955361	LTR|ERVL-MaLR|MLT1D	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.933333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	149006003	149006017	149006003	+	RAMPAGE_only	28	28	69	2.140908	4.777452	chr2	149005870	149006070	SINE|MIR|MIRc	-	chr2	148999934	149026759	KIF5C|ENST00000482151.1	+	148999934,149000721,149005392,149007962,149010134,149011569,149023077	149000524,149000782,149005464,149008067,149010351,149011683,149026759	0.811594
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	65423957	65424010	65423957	+	High_confidence	4	4	29	0.899802	4.066109	chr18	65423814	65424190	LTR|ERVL-MaLR|THE1C	+	chr18	65424012	65447512	LINC01916|ENST00000582028.1	+	65424012,65441689,65447146	65424071,65441823,65447512	0.827586
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	121281850	121281892	121281850	+	RAMPAGE_only	12	15	36	1.116995	4.892147	chr9	121281751	121281897	SINE|MIR|MIRc	+	chr9	121286080	121332842	GSN|NM_001258029.1	+	121286080,121301962,121302910,121310683,121312338,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387,121332433	121286185,121302167,121303065,121310845,121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331448,121332842	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	57793985	57794022	57794021	+	RAMPAGE_only	8	8	26	0.806719	4.133661	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.653846
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	144459450	144459456	144459450	-	High_confidence	3	3	10	0.310276	2.921928	chr1	144459208	144459506	SINE|Alu|AluJb	+	chr1	144421385	144459464	NBPF15|NM_001170755.2	-	144421385,144423869,144424689,144425516,144426277,144427046,144427817,144428605,144429699,144433772,144435110,144435780,144436894,144437944,144439828,144440140,144440401,144442669,144448774,144450771,144456536,144459365	144423256,144423975,144424862,144425568,144426450,144427098,144427990,144428657,144429863,144433824,144435316,144435853,144437109,144438047,144440038,144440295,144440581,144442920,144448916,144450802,144456805,144459464	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	57794056	57794070	57794056	+	RAMPAGE_only	4	4	9	0.279249	2.750000	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	154409575	154409582	154409581	+	RAMPAGE_only	5	5	11	0.341304	2.663533	chr5	154409601	154409687	LINE|L1|L1PREC2	+	chr5	154403776	154419033	GALNT10|ENST00000517958.1	+	154403776,154409540,154412888,154415782,154416813	154404216,154409762,154413005,154415932,154419033	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	76781587	76781588	76781587	+	RAMPAGE_only	6	6	7	0.217194	2.584963	chr12	76781376	76781761	LTR|ERVL-MaLR|MSTD	+	chr12	76797518	76822490	ZDHHC17|ENST00000549944.1	+	76797518,76805316,76809042,76809712,76813312,76815145,76815856,76822405	76797537,76805439,76809120,76809857,76813449,76815210,76816019,76822490	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	72363498	72363574	72363556	-	High_confidence	4	5	26	0.806719	4.023146	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.538462
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	32446977	32447003	32446977	+	High_confidence	52	57	138	4.281815	5.521153	chr10	32447010	32447415	LINE|L2|L2	+	chr10	32446386	32514584	CCDC7|ENST00000545067.6	+	32446386,32451591,32453343,32456250,32462682,32463016,32472480,32473966,32511508	32446631,32451921,32453436,32456334,32462703,32463049,32472542,32474023,32514584	0.920290
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	92077219	92077238	92077219	-	RAMPAGE_only	3	3	9	0.279249	2.947703	chr9	92072526	92078223	LTR|ERV1|HERVH-int	+	chr9	92028457	92080076	SPTLC1|ENST00000646481.1	-	92028457,92029179,92034809,92038247,92045998,92046274,92047171,92047612,92049959,92055404,92059178,92067965,92076797,92080015	92028757,92029346,92034883,92038365,92046053,92046334,92047268,92047708,92050067,92055494,92059308,92068098,92077035,92080076	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	37105319	37105328	37105319	-	RAMPAGE_only	3	3	8	0.248221	2.750000	chr2	37105213	37105651	LTR|ERVL-MaLR|MSTB1	+	chr2	37099209	37157047	EIF2AK2|ENST00000233057.8	-	37099209,37107473,37109193,37114730,37119958,37122505,37126288,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687,37148856,37156907	37107395,37107527,37109295,37114859,37120139,37122664,37126411,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147822,37149023,37157047	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	196742047	196742048	196742047	+	RAMPAGE_only	5	6	7	0.217194	2.807355	chr1	196742092	196742390	SINE|Alu|AluSz	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	111911611	111911613	111911611	+	High_confidence	6	11	12	0.372332	2.855389	chr3	111911655	111911757	DNA|hAT-Ac|OldhAT1	+	chr3	111911609	111976465	PHLDB2|ENST00000495180.1	+	111911609,111913318,111919071,111920281,111932268,111939474,111940534,111945267,111953929,111962107,111966612,111967677,111969689,111973731,111974422	111911724,111913702,111919215,111920419,111932397,111939630,111940645,111945357,111954029,111962312,111966703,111967824,111969909,111973817,111976465	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	129559620	129559624	129559620	-	High_confidence	17	17	31	0.961857	4.567100	chr3	129559416	129559571	SINE|MIR|MIR	-	chr3	129555213	129558697	PLXND1|ENST00000504524.5	-	129555213,129556616,129557082,129558427	129556428,129556691,129557223,129558697	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	131000387	131000417	131000414	+	RAMPAGE_only	3	3	14	0.434387	2.931209	chr12	131000459	131000769	SINE|Alu|AluSx1	+	chr12	131002498	131141460	ADGRD1|ENST00000376682.8	+	131002498,131003184,131004185,131005971,131014198,131076800,131084539,131104830,131105753,131108723,131118384,131120846,131131724,131136036,131136972,131138136,131139167	131002837,131003302,131004296,131006047,131014340,131076874,131084663,131104934,131105865,131108877,131118451,131120913,131131816,131136163,131137014,131138229,131141460	0.928571
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	31587007	31587021	31587009	+	High_confidence	34	56	119	3.692290	5.289306	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.949580
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	34462755	34462795	34462794	-	High_confidence	12	14	29	0.899802	4.112821	chr14	34462624	34462760	LINE|L2|L2a	-	chr14	34432788	34462356	SPTSSA|ENST00000298130.4	-	34432788,34462095	34435304,34462356	0.620690
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	36540276	36540277	36540276	-	RAMPAGE_only	9	9	12	0.372332	3.251629	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36493891	36547470	STK38|ENST00000229812.7	-	36493891,36496710,36497779,36498362,36499872,36506582,36507499,36515337,36517716,36521733,36524340,36525590,36540071,36547189	36495914,36496805,36497875,36498486,36499990,36506644,36507602,36515492,36517840,36521817,36524463,36525642,36540207,36547470	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	70681180	70681284	70681283	-	RAMPAGE_only	13	13	62	1.923714	4.606331	chr15	70680885	70681297	LINE|L2|L2a	+	chr15	70656934	70702281	MSTRG.8085.5	-	70656934,70660150,70664661,70666723,70671038,70677107,70678098,70679607,70684264,70687539,70687749,70699526	70657127,70660216,70664814,70669462,70676591,70677140,70678206,70682795,70684446,70687646,70695105,70702281	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	32910595	32910622	32910595	-	RAMPAGE_only	2	2	8	0.248221	2.750000	chr10	32910564	32910691	LINE|L1|L1MD	+	chr10	32900317	32935558	ITGB1|NM_033668.2	-	32900317,32907062,32908367,32910222,32911447,32911885,32919884,32920244,32922256,32922639,32923584,32925870,32928093,32929821,32932514,32935491	32901635,32907143,32908534,32910455,32911670,32912124,32920084,32920385,32922346,32922735,32923740,32926109,32928264,32930044,32932600,32935558	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	92536601	92536704	92536601	-	High_confidence	34	39	184	5.709087	6.340567	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.858696
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	16402009	16402013	16402009	-	RAMPAGE_only	9	13	20	0.620553	3.646439	chr6	16401830	16402189	LTR|ERVL-MaLR|THE1B	-	chr6	16327723	16328281	ATXN1|ENST00000642969.1	-	16327723	16328281	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	108224074	108224075	108224074	+	High_confidence	11	11	12	0.372332	3.277613	chr11	108224066	108224287	SINE|MIR|MIR	-	chr11	108224077	108235743	ATM|ENST00000601453.2	+	108224077,108224783,108227594,108227775,108229177,108235669	108224136,108224871,108227696,108227888,108229323,108235743	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	159976826	159976861	159976826	+	RAMPAGE_only	10	10	54	1.675493	4.084645	chr1	159976818	159976895	SINE|Alu|FLAM_A	+	chr1	159961223	159979061	LINC01133|ENST00000423943.1	+	159961223,159976643,159978599	159961405,159977112,159979061	0.722222
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	156540569	156540572	156540569	-	RAMPAGE_only	13	13	27	0.837746	3.031821	chr3	156540323	156540630	SINE|Alu|AluY	+	chr3	156539552	156554125	SSR3|NM_001308205.1	-	156539552,156544307,156548904,156553654,156553992	156543269,156544439,156549003,156553781,156554125	0.925926
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	50737436	50737456	50737436	+	RAMPAGE_only	3	4	9	0.279249	2.750000	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50740266	50744808	LUC7L3|ENST00000507503.1	+	50740266,50741101,50741656,50743705,50744651	50740345,50741246,50741731,50743810,50744808	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	58306104	58306124	58306115	+	High_confidence	5	5	16	0.496442	3.030639	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	102431237	102431248	102431244	-	High_confidence	11	13	39	1.210078	4.650662	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.923077
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	106682394	106682431	106682430	-	RAMPAGE_only	3	3	7	0.217194	2.521641	chr11	106682331	106682490	DNA|hAT-Charlie|MER5B	+	chr11	106674011	107018445	GUCY1A2|NM_001256424.1	-	106674011,106708511,106746550,106776438,106809992,106939459,106978618,106986069,107017752	106687756,106708666,106746643,106776582,106810478,106940178,106978740,106986131,107018445	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	78568356	78568375	78568363	-	High_confidence	45	54	118	3.661262	6.208962	chr7	78567616	78568734	LINE|L2|L2a	+	chr7	78518063	78568364	MAGI2|ENST00000635863.1	-	78518063,78521429,78567948,78568094	78519126,78521645,78568004,78568364	0.822034
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	106561950	106561951	106561950	-	High_confidence	41	41	43	1.334189	5.064869	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.558140
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	147382883	147382900	147382899	+	High_confidence	18	18	50	1.551382	4.534830	chr5	147382091	147383300	LINE|L1|L1M4c	-	chr5	147382897	147383949	STK32A|ENST00000515832.1	+	147382897,147383889	147383505,147383949	0.660000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	31959158	31959179	31959178	+	High_confidence	5	5	9	0.279249	2.503258	chr12	31959043	31959216	DNA|hAT-Charlie|MER5A	+	chr12	31959418	31993107	KIAA1551|ENST00000312561.8	+	31959418,31960776,31970188,31980877,31987238,31992377	31959491,31960871,31970356,31985957,31987322,31993107	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	90997820	90997842	90997841	-	RAMPAGE_only	4	5	18	0.558498	3.734522	chr12	90997548	90998012	LINE|RTE-X|L4_A_Mam	-	chr12	90972555	91002469	EPYC|ENST00000550203.1	-	90972555,90978087,91002400	90972980,90978262,91002469	0.555556
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	69625643	69625644	69625643	+	RAMPAGE_only	5	6	8	0.248221	2.807355	chr8	69625370	69627029	LTR|ERV1|LTR12C	-	chr8	69492831	69660051	MSTRG.22440.9	+	69492831,69501873,69563538,69563915,69575969,69586356,69588971,69600602,69601653,69621034,69626260,69627771,69628170,69629503,69638501,69638734,69640807,69658504	69493125,69501968,69563611,69564147,69576209,69586508,69589141,69600753,69604932,69626143,69627306,69627866,69628236,69629679,69638644,69638858,69640841,69660051	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	82881860	82881884	82881868	-	High_confidence	2	4	16	0.496442	3.456565	chr4	82881686	82881823	LINE|L2|L2c	-	chr4	82818671	82881937	SEC31A|ENST00000505472.5	-	82818671,82821036,82824554,82827368,82828999,82842139,82844385,82845200,82848803,82851430,82853569,82854902,82856951,82857688,82861630,82862533,82863317,82864361,82866807,82867154,82870324,82871943,82874610,82875726,82878729,82880798,82881857	82819253,82821108,82824674,82827632,82829058,82842481,82844509,82845293,82848977,82851604,82853715,82855029,82857130,82857764,82861708,82862572,82863392,82864598,82866960,82867316,82870424,82872086,82874751,82875822,82878928,82880922,82881937	0.937500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	51403425	51403482	51403428	-	RAMPAGE_only	6	7	42	1.303161	3.860927	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.976190
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	177499704	177499729	177499704	+	RAMPAGE_only	3	3	10	0.310276	3.321928	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.700000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	38515654	38515671	38515670	-	High_confidence	2	3	7	0.217194	2.807355	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	7147267	7147288	7147287	+	High_confidence	14	14	24	0.744664	3.827910	chrX	7147205	7147297	DNA|hAT-Charlie|MER5A1	-	chrX	7147251	7354643	STS|NM_001320750.1	+	7147251,7190879,7253195,7257241,7257465,7259348,7275950,7305045,7325338,7333985,7349887	7147602,7191008,7253336,7257363,7257588,7259772,7276087,7305183,7325498,7334107,7354643	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	174410054	174410086	174410078	+	High_confidence	4	4	20	0.620553	3.821928	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410081	174427895	SCRN3|ENST00000549848.5	+	174410081,174422884,174424474,174427712	174410503,174423047,174424649,174427895	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	2667103	2667196	2667195	+	High_confidence	12	15	55	1.706521	5.294907	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.890909
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	178206359	178206366	178206359	+	RAMPAGE_only	3	3	14	0.434387	3.521641	chr5	178206313	178206462	SINE|MIR|MIRb	-	chr5	178204570	178211142	HNRNPAB|ENST00000504898.5	+	178204570,178205841,178206731,178207093,178209329,178210131,178210552	178205046,178206010,178206890,178207225,178209447,178210272,178211142	0.928571
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	134432378	134432436	134432378	-	High_confidence	9	10	40	1.241106	4.271101	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	20658589	20658624	20658597	+	High_confidence	5	5	27	0.837746	3.783465	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.703704
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	74248877	74248905	74248877	-	RAMPAGE_only	3	3	9	0.279249	2.947703	chrX	74248582	74248927	LINE|L1|L1MC5a	-	chrX	74209975	74292529	MSTRG.24205.12	-	74209975,74218620,74240617,74243129,74280930,74281701,74292168	74218577,74240557,74242520,74280494,74281085,74281848,74292529	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	16081667	16081696	16081667	+	High_confidence	2	2	8	0.248221	2.521641	chr19	16081397	16081692	SINE|Alu|AluSc	-	chr19	16081722	16093581	TPM4|ENST00000592138.5	+	16081722,16086422,16088026,16089044,16093535	16082046,16086540,16088097,16089120,16093581	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	122917830	122917838	122917834	-	RAMPAGE_only	5	5	10	0.310276	2.725481	chr4	122917758	122918008	LINE|L2|L2b	+	chr4	122892740	122913288	NUDT6|ENST00000502270.5	-	122892740,122897623,122912567,122913206	122893225,122897678,122912623,122913288	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	45450739	45450766	45450765	-	High_confidence	9	9	38	1.179051	4.807009	chr19	45450487	45450799	SINE|Alu|AluSx	+	chr19	45413962	45450725	ERCC1|ENST00000592083.5	-	45413962,45414860,45416820,45419097,45420323,45421177,45423269,45449172,45450640	45414034,45414960,45416897,45419197,45420427,45421393,45423381,45449244,45450725	0.736842
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	110330110	110330118	110330110	-	RAMPAGE_only	7	7	20	0.620553	3.787144	chr6	110329832	110331376	LINE|L1|L1MD2	+	chr6	110245927	110358272	METTL24|ENST00000338882.4	-	110245927,110298921,110315341,110322773,110357954	110246260,110299150,110315481,110322872,110358272	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	55488428	55488489	55488428	+	High_confidence	3	3	16	0.496442	3.500000	chr16	55488213	55488438	DNA|hAT|MamRep38	+	chr16	55488661	55502889	MMP2|ENST00000570283.1	+	55488661,55491800,55493157,55496925,55498288,55502778	55488716,55491956,55493293,55497062,55498448,55502889	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	166604771	166604776	166604775	+	High_confidence	59	65	102	3.164820	5.782141	chr1	166604742	166604798	DNA|hAT-Ac|OldhAT1	-	chr1	166603915	166625238	FMO9P|ENST00000477875.6	+	166603915,166604759,166612459,166620798,166621869,166623643,166624680	166603984,166604857,166612603,166620987,166622032,166623786,166625238	0.931373
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	14256669	14256689	14256688	+	RAMPAGE_only	6	6	11	0.341304	2.913977	chr11	14256710	14256857	LINE|L1|L1ME4c	+	chr11	13962688	14267884	SPON1|ENST00000576479.3	+	13962688,13982846,14041520,14075344,14079898,14135419,14243331,14254527,14255646,14256616,14257715,14259279,14259533,14260587,14262711,14265523	13963142,13982953,14041654,14075418,14080021,14135568,14243396,14254729,14255787,14256692,14257898,14259450,14259701,14260752,14262975,14267884	0.727273
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	35432475	35432500	35432499	-	High_confidence	8	9	25	0.775691	4.323856	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	178679637	178679659	178679637	-	RAMPAGE_only	3	3	8	0.248221	2.807355	chr2	178679617	178679655	LINE|CR1|L3	-	chr2	178636751	178702520	TTN|ENST00000414766.5	-	178636751,178639698,178640047,178640540,178641240,178642236,178673632,178674313,178678124,178678413,178678746,178681660,178682696,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453	178636799,178639788,178640110,178640630,178641315,178642317,178673710,178674409,178678208,178678497,178678830,178681738,178682903,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702520	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	84368670	84368699	84368698	-	High_confidence	7	7	34	1.054940	4.550267	chr9	84368439	84368927	LINE|L1|L1M1	-	chr9	84275849	84368498	SLC28A3|NM_022127.2	-	84275849,84279264,84279974,84280800,84285344,84285942,84288047,84290153,84292667,84294194,84297220,84297905,84299580,84302199,84305253,84309628,84313358,84340573,84368451	84278344,84279385,84280073,84280882,84285542,84286111,84288178,84290279,84292748,84294275,84297298,84298019,84299725,84302389,84305345,84309714,84313454,84340678,84368498	0.647059
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	123061178	123061322	123061256	-	High_confidence	81	84	279	8.656714	6.038380	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.896057
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	31355484	31355521	31355520	+	RAMPAGE_only	2	2	7	0.217194	2.807355	chr10	31355345	31356016	LINE|L2|L2b	-	chr10	31321689	31461180	MSTRG.2549.22	+	31321689,31387123,31461036	31374964,31387266,31461180	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	64226142	64226169	64226158	-	High_confidence	74	78	255	7.912050	7.044111	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.952941
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	93795054	93795102	93795069	+	High_confidence	11	11	42	1.303161	4.247557	chr8	93794953	93795181	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	19647778	19647785	19647784	-	RAMPAGE_only	6	6	12	0.372332	3.095795	chrX	19647773	19647939	DNA|hAT-Charlie|MER5A	+	chrX	19592067	19664715	SH3KBP1|ENST00000477102.1	-	19592067,19594948,19601499,19607937,19631863,19645399,19664688	19592147,19595000,19601650,19608045,19631958,19645475,19664715	0.583333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	20750344	20750363	20750350	-	RAMPAGE_only	4	4	17	0.527470	3.969816	chr19	20747318	20755137	LTR|ERV1|HERVE-int	-	chr19	20746922	20755250	AC010329.1|ENST00000593903.1	-	20746922	20755250	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	123611682	123611713	123611682	-	RAMPAGE_only	4	4	13	0.403359	3.251629	chrX	123611621	123612702	LINE|L1|L1MB5	+	chrX	123603448	123613554	THOC2|ENST00000455053.5	-	123603448,123610917,123611439,123613398	123603748,123610957,123611516,123613554	0.923077
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	65394614	65394639	65394631	-	RAMPAGE_only	14	14	40	1.241106	4.454470	chr15	65394557	65394670	SINE|MIR|MIRb	-	chr15	65381486	65396429	IGDCC4|ENST00000559327.1	-	65381486,65384953,65385830,65386550,65388448,65388807,65389283,65390154,65391879,65392133,65393360,65394410,65395093,65395749	65384419,65385115,65386059,65386656,65388586,65388978,65389411,65390338,65391981,65392370,65393531,65394548,65395258,65396429	0.950000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	66408519	66408539	66408519	+	High_confidence	8	8	28	0.868774	4.078419	chr16	66408442	66408538	LTR|ERVL|LTR91	-	chr16	66408523	66410901	LINC00920|NR_046242.1	+	66408523,66410279	66408814,66410901	0.821429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	45292685	45292762	45292685	+	High_confidence	10	16	70	2.171935	5.436575	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.871429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	48868595	48868617	48868595	-	High_confidence	1174	1213	4973	154.300489	7.927753	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.978283
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	60887035	60887071	60887035	+	High_confidence	2	3	14	0.434387	3.546594	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	78620056	78620058	78620056	+	High_confidence	21	39	39	1.210078	4.474899	chr1	78620091	78620134	LINE|L1|L1MC4a	+	chr1	78620381	78646145	IFI44L|NM_006820.3	+	78620381,78627905,78628950,78629719,78635336,78637031,78641020,78641434,78641774	78620571,78628393,78628999,78629915,78635489,78637203,78641121,78641609,78646145	0.871795
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	57160731	57160765	57160731	+	RAMPAGE_only	2	2	10	0.310276	2.725481	chr12	57160171	57160751	LINE|L2|L2a	+	chr12	57128498	57213351	LRP1|ENST00000243077.7	+	57128498,57138458,57141373,57143678,57144971,57145226,57154207,57154478,57156093,57156776,57158401,57159824,57160892,57162316,57162857,57165804,57166083,57166929,57167443,57169139,57173167,57173779,57175459,57175908,57177040,57177426,57178358,57178889,57179328,57179781,57180046,57180329,57180666,57181156,57183378,57183774,57184084,57184325,57184838,57185080,57185530,57187266,57190804,57191319,57192844,57193175,57193565,57193898,57194353,57194576,57194984,57195270,57195657,57195862,57196086,57196981,57197298,57197544,57198155,57198464,57199211,57199876,57200441,57200698,57201033,57201496,57201779,57202420,57203180,57203388,57204409,57204626,57205108,57205350,57205557,57206472,57208037,57208710,57209082,57209691,57210028,57210306,57210717,57211175,57211486,57211749,57211926,57212116,57212414	57129031,57138581,57141511,57143798,57145100,57145490,57154370,57154701,57156283,57156920,57158638,57160005,57161115,57162518,57162983,57165945,57166209,57167046,57167524,57169307,57173350,57173980,57175705,57176106,57177245,57177591,57178603,57179021,57179556,57179956,57180141,57180479,57180807,57181291,57183510,57183909,57184214,57184452,57184990,57185205,57185908,57187456,57191009,57191512,57192970,57193304,57193685,57194012,57194503,57194699,57195101,57195399,57195780,57196003,57196277,57197165,57197384,57197664,57198343,57198670,57199400,57200025,57200535,57200815,57201153,57201619,57201905,57202537,57203287,57203521,57204529,57204749,57205249,57205485,57205677,57206741,57208216,57208817,57209199,57209868,57210169,57210480,57210879,57211350,57211588,57211814,57212017,57212261,57213351	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	98943483	98943484	98943483	+	High_confidence	16	18	20	0.620553	3.576618	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	8600707	8600739	8600707	+	High_confidence	15	15	77	2.389129	4.719365	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.818182
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	74851629	74851672	74851629	+	RAMPAGE_only	10	10	36	1.116995	4.054722	chr8	74851569	74851677	LINE|L2|L2a	+	chr8	74824536	74855044	PI15|NM_015886.4	+	74824536,74825209,74843980,74845127,74845381,74849117	74824675,74825522,74844099,74845260,74845497,74855044	0.972222
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	16756602	16756625	16756602	+	RAMPAGE_only	6	6	15	0.465415	3.182006	chr11	16756627	16756928	SINE|Alu|AluSp	+	chr11	16738600	16758354	C11orf58|NM_014267.5	+	16738600,16744600,16748096,16752784,16754870	16738841,16744684,16748157,16752894,16758354	0.866667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	16093397	16093398	16093397	+	RAMPAGE_only	5	5	7	0.217194	2.807355	chr19	16093184	16093492	SINE|Alu|AluSx4	-	chr19	16088710	16102946	TPM4|ENST00000591645.2	+	16088710,16089044,16093535,16093683,16101263	16088849,16089120,16093598,16093753,16102946	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	140485221	140485234	140485233	+	RAMPAGE_only	4	4	9	0.279249	2.947703	chr5	140485274	140485392	SINE|Alu|AluJo	+	chr5	140496649	140498190	ANKHD1|ENST00000462121.1	+	140496649,140498037	140497278,140498190	0.555556
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	79787077	79787099	79787077	-	High_confidence	2	2	9	0.279249	3.000000	chr12	79787044	79787514	LINE|L2|L2c	+	chr12	79775917	79786914	PPP1R12A|ENST00000550351.5	-	79775917,79778549,79781814,79786373	79776015,79778600,79781862,79786914	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	172162520	172162524	172162523	+	RAMPAGE_only	8	9	18	0.558498	4.169925	chr1	172162565	172162649	LINE|L1|L1ME4b	+	chr1	172379017	172418466	DNM3|ENST00000485254.2	+	172379017,172387132,172388572,172418280	172379182,172387359,172388809,172418466	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	75306651	75306665	75306651	-	High_confidence	3	3	7	0.217194	2.807355	chr11	75306520	75306605	SINE|MIR|MIRc	-	chr11	75274199	75306709	ARRB1|ENST00000532525.1	-	75274199,75276838,75277363,75278608,75281074,75281961,75283286,75284234,75287314,75290008,75306552	75274211,75276911,75277448,75278744,75281142,75282021,75283483,75284279,75287375,75290039,75306709	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	212688413	212688435	212688434	-	High_confidence	3	4	8	0.248221	2.750000	chr1	212688077	212688769	LINE|CR1|L3	-	chr1	212686417	212687509	BATF3|ENST00000471382.5	-	212686417,212687466	212686979,212687509	0.625000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	91353190	91353211	91353190	-	RAMPAGE_only	23	23	115	3.568179	5.675957	chr12	91353109	91353281	LTR|ERVL-MaLR|MLT1A0	-	chr12	91143276	91183124	DCN|NM_001920.4	-	91143276,91151653,91153095,91157074,91158295,91164604,91178341,91182654	91146252,91151792,91153189,91157188,91158509,91164717,91178585,91183124	0.834783
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	237351463	237351464	237351463	-	RAMPAGE_only	5	5	8	0.248221	2.500000	chr2	237351435	237351596	LINE|L2|L2c	+	chr2	237324018	237355779	COL6A3|ENST00000491769.1	-	237324018,237325559,237333449,237334625,237336134,237339014,237340451,237342064,237344940,237345057,237345180,237346502,237347806,237348348,237348612,237350146,237351129,237352521,237353340,237354898	237324814,237325724,237333548,237334889,237336532,237339117,237341150,237344843,237344952,237345094,237345213,237346565,237347869,237348384,237348663,237350209,237351192,237352584,237353403,237355779	0.625000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	118143019	118143020	118143019	-	RAMPAGE_only	9	9	10	0.310276	2.947703	chr2	118137000	118143020	LINE|L1|L1PA2	-	chr2	118132127	118186386	THORLNC|ENST00000414886.5	-	118132127,118176764,118183086,118186230	118132372,118176905,118183322,118186386	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	34244753	34244816	34244815	-	High_confidence	8	14	51	1.582410	4.605389	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34164697	34245202	MSTRG.18428.1	-	34164697,34175821,34179012,34182679,34218294,34244615	34175537,34175957,34179097,34182867,34218450,34245202	0.725490
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	34369409	34369458	34369434	+	RAMPAGE_only	5	6	22	0.682608	3.970573	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	45289379	45289380	45289379	+	RAMPAGE_only	4	4	7	0.217194	2.584963	chr21	45289210	45290050	LTR|ERV1|MER4D1	-	chr21	45288061	45297354	LINC00205|ENST00000647108.1	+	45288061,45289350,45290470,45296201	45288165,45289438,45293522,45297354	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	22906413	22906421	22906413	-	RAMPAGE_only	2	2	7	0.217194	2.584963	chr14	22906387	22906610	DNA|TcMar-Tigger|Tigger3b	+	chr14	22906027	22919110	RBM23|ENST00000554955.5	-	22906027,22908332,22909482,22911327,22918998	22906368,22908380,22909595,22911403,22919110	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	9569148	9569163	9569162	+	RAMPAGE_only	4	4	8	0.248221	2.521641	chr12	9568603	9569205	LTR|ERV1|HERVE-int	-	chr12	9557313	9576275	AC092821.1|ENST00000520314.2	+	9557313,9558368,9559174,9560109,9560816,9565091,9567489,9570765,9571460,9573002,9573465,9574846	9557580,9558452,9559348,9560191,9564325,9565303,9569202,9570892,9571573,9573093,9573534,9576275	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	31352553	31352632	31352563	+	RAMPAGE_only	4	4	25	0.775691	3.803509	chr10	31352433	31352972	LTR|ERVL-MaLR|MLT1G1	-	chr10	31321689	31461180	MSTRG.2549.22	+	31321689,31387123,31461036	31374964,31387266,31461180	0.960000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	45292790	45292838	45292825	+	High_confidence	5	5	20	0.620553	3.576618	chr12	45292721	45292854	DNA|hAT-Tip100|MamTip3	+	chr12	45292682	45432351	ANO6|ENST00000441606.2	+	45292682,45302013,45331294,45347021,45348027,45348517,45350658,45357289,45367687,45378052,45388160,45390420,45401794,45403071,45403438,45409356,45416698,45421070,45422956,45429104	45292934,45302093,45331423,45347087,45348315,45348631,45350774,45357424,45367793,45378113,45388303,45390498,45402020,45403241,45403536,45409487,45416904,45421273,45423062,45432351	0.850000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	5680234	5680261	5680248	-	High_confidence	5	5	32	0.992885	3.999047	chr19	5680175	5680212	SINE|MIR|MIRc	-	chr19	5678421	5680252	C19orf70|ENST00000587950.5	-	5678421,5679344,5679585,5680054	5678648,5679396,5679763,5680252	0.968750
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	12800915	12801002	12800944	-	High_confidence	5	5	34	1.054940	4.079679	chr19	12800721	12800917	SINE|MIR|MIRb	-	chr19	12796819	12801787	PRDX2|ENST00000334482.9	-	12796819,12800176,12800915,12801158,12801739	12797166,12800299,12801069,12801270,12801787	0.970588
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	73144768	73144775	73144768	-	RAMPAGE_only	2	2	8	0.248221	2.521641	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73113083	73153935	ANKRD17|ENST00000514252.1	-	73113083,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763,73148812,73151429,73153879	73113311,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73146873,73149050,73151524,73153935	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	93794823	93794824	93794823	+	High_confidence	4	5	7	0.217194	2.521641	chr8	93794713	93794824	LINE|L2|L2a	-	chr8	93794815	93816696	TMEM67|ENST00000519845.5	+	93794815,93795408,93795900,93797133,93797330,93799617,93803603,93804761,93808839,93809056,93809784,93815304,93816371	93795221,93795507,93795987,93797233,93797470,93799758,93803684,93804878,93808956,93809161,93809887,93815447,93816696	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	84515225	84515242	84515225	-	RAMPAGE_only	5	5	12	0.372332	3.084963	chr7	84514894	84515339	LTR|ERVL-MaLR|MLT1G3	-	chr7	84194474	84492549	SEMA3A|ENST00000448879.5	-	84194474,84307206,84371823,84489095,84492459	84194668,84307292,84371900,84489182,84492549	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	215848877	215848878	215848877	-	RAMPAGE_only	7	7	9	0.279249	3.169925	chr2	215848652	215849119	LTR|ERVL|MER70B	-	chr2	215743819	215843722	LINC00607|ENST00000417922.1	-	215743819,215747303,215750242,215843325,215843623	215743914,215747394,215750417,215843423,215843722	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	74218046	74218108	74218107	-	RAMPAGE_only	6	6	28	0.868774	4.249868	chrX	74218073	74218254	DNA|hAT-Charlie|MER117	-	chrX	74209975	74292529	MSTRG.24205.12	-	74209975,74218620,74240617,74243129,74280930,74281701,74292168	74218577,74240557,74242520,74280494,74281085,74281848,74292529	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	111781030	111781052	111781037	-	High_confidence	51	62	185	5.740115	6.263849	chr6	111781009	111781219	SINE|MIR|MIR	+	chr6	111707929	111781080	FYN|ENST00000524310.5	-	111707929,111714346,111719804,111780565,111781055	111708020,111714443,111720062,111780635,111781080	0.816216
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	31651986	31652027	31651986	-	RAMPAGE_only	8	8	22	0.682608	3.970573	chr12	31651758	31652374	LTR|ERV1|LTR9	+	chr12	31382222	31591097	DENND5B|ENST00000389082.9	-	31382222,31389323,31392266,31392613,31398174,31399653,31402497,31409262,31413435,31415366,31423596,31424534,31426292,31433154,31442774,31447537,31451939,31460193,31479588,31495809,31590705	31387786,31389498,31392393,31392696,31398362,31399772,31402643,31409384,31413564,31415448,31423675,31424687,31426424,31433248,31442925,31447769,31452476,31460381,31480255,31495919,31591097	0.545455
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	184811034	184811062	184811034	-	RAMPAGE_only	3	3	10	0.310276	2.921928	chr1	184810857	184811494	LTR|ERV1|MER57-int	+	chr1	184790723	184805985	FAM129A|ENST00000417056.5	-	184790723,184798078,184803584,184805945	184791065,184798190,184803692,184805985	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	147937574	147937584	147937579	+	RAMPAGE_only	3	4	10	0.310276	2.725481	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.700000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	15798662	15798670	15798664	-	RAMPAGE_only	73	103	196	6.081419	6.059257	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.954082
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	56157286	56157342	56157322	+	High_confidence	22	23	141	4.374898	5.219169	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.843972
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	920814	920838	920837	+	High_confidence	8	9	13	0.403359	3.022055	chr16	920344	920841	LINE|L1|L1MEf	+	chr16	921032	934524	LMF1-AS1|NR_110945.1	+	921032,933100,933337	921167,933255,934524	0.846154
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	47753927	47753939	47753927	+	RAMPAGE_only	3	3	9	0.279249	2.947703	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47758577	47780307	SLC48A1|ENST00000547002.5	+	47758577,47760215,47772169,47779027,47780144	47758660,47760401,47772320,47779195,47780307	0.555556
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	31681451	31681481	31681451	-	RAMPAGE_only	9	12	35	1.085968	4.430313	chr1	31681233	31681470	SINE|MIR|MIRb	-	chr1	31672429	31683748	COL16A1|ENST00000458715.5	-	31672429,31672595,31672723,31675006,31675257,31679631,31680041,31680904,31681022,31682933,31683193,31683333,31683706	31672502,31672637,31672840,31675039,31675311,31679685,31680101,31680931,31681067,31683002,31683247,31683369,31683748	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	227142956	227142957	227142956	-	RAMPAGE_only	23	23	26	0.806719	4.403856	chr1	227142624	227142917	SINE|Alu|AluSg4	-	chr1	226989864	227317182	CDC42BPA|ENST00000366767.7	-	226989864,226994822,227004993,227016079,227016926,227023262,227026054,227028656,227030407,227031297,227033333,227034654,227035470,227040130,227047926,227069776,227072207,227073863,227074258,227080892,227091885,227100991,227112311,227119803,227129108,227139575,227142944,227145488,227147358,227160542,227193785,227199556,227213135,227254063,227317004	226994399,226994980,227005111,227016197,227017050,227023347,227026152,227029250,227030470,227031514,227033415,227034794,227035607,227040236,227048010,227069853,227072299,227074012,227074364,227081017,227091991,227101239,227112422,227119937,227129231,227139742,227143024,227145737,227147559,227160636,227193934,227199652,227213219,227254155,227317182	0.615385
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	71050189	71050221	71050189	+	RAMPAGE_only	4	4	20	0.620553	2.960964	chr2	71048568	71050605	LTR|ERV1|HERVE-int	+	chr2	71055526	71056003	OR7E62P|ENST00000456741.1	+	71055526	71056003	0.850000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	64583498	64583509	64583498	+	High_confidence	2	2	7	0.217194	2.521641	chr3	64583480	64583692	DNA|hAT-Charlie|MER20	-	chr3	64583783	64587284	ADAMTS9-AS1|ENST00000631269.1	+	64583783,64586816	64584101,64587284	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	118647768	118647868	118647768	+	RAMPAGE_only	8	8	45	1.396244	4.897081	chr11	118647666	118647768	SINE|MIR|MIRb	-	chr11	118646333	118657152	PHLDB1|ENST00000526537.2	+	118646333,118650076,118650444,118655604,118656682	118648076,118650193,118650547,118655690,118657152	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	24666746	24666769	24666768	+	High_confidence	6	6	10	0.310276	2.646439	chr1	24666479	24666789	SINE|Alu|AluSx1	+	chr1	24666554	24669264	SRRM1|ENST00000489130.2	+	24666554,24669122	24666925,24669264	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	151337609	151337624	151337619	-	RAMPAGE_only	7	7	24	0.744664	4.251629	chr2	151337407	151337662	SINE|Alu|AluSq2	+	chr2	151270464	151329376	MSTRG.13803.1	-	151270464,151271625,151275483,151275757,151278827,151281947,151282867,151289592,151292851,151329352	151270875,151271732,151275670,151275864,151278990,151282043,151282954,151289791,151293036,151329376	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	32927963	32927977	32927976	+	RAMPAGE_only	76	78	180	5.584976	5.976038	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044855	AC090204.1|ENST00000500843.2	+	32996177,33041634,33044366	32996316,33041743,33044855	0.866667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	38515496	38515497	38515496	-	High_confidence	5	6	8	0.248221	2.807355	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38406727	38515740	AC011247.1|ENST00000417039.5	-	38406727,38469243,38482958,38496274,38515446	38406989,38469441,38483156,38496478,38515740	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	23636481	23636508	23636507	+	High_confidence	7	7	15	0.465415	3.521641	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636372	23645639	DHRS2|ENST00000344777.11	+	23636372,23638826,23639178,23639793,23643151,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644554,23644882,23645639	0.933333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	114624940	114625007	114625006	-	High_confidence	24	29	171	5.305728	5.802879	chr3	114624943	114625078	SINE|tRNA|LFSINE_Vert	+	chr3	114314499	114624945	ZBTB20|NM_001164346.2	-	114314499,114350273,114380216,114389004,114500351,114624876	114339426,114351878,114380404,114389105,114500391,114624945	0.649123
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	92819645	92819657	92819645	+	RAMPAGE_only	5	5	9	0.279249	2.500000	chr14	92819643	92819657	LINE|L2|L2c	+	chr14	92794230	92839963	GOLGA5|NM_005113.3	+	92794230,92797407,92806735,92809299,92810253,92811550,92816250,92819707,92824545,92833121,92835558,92837385,92839365	92794456,92797981,92806963,92809519,92810377,92811754,92816421,92819836,92824644,92833347,92835664,92837449,92839963	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	37297381	37297397	37297387	+	High_confidence	7	7	16	0.496442	3.327820	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	39494625	39494642	39494625	+	RAMPAGE_only	3	3	8	0.248221	3.000000	chr17	39494618	39494687	DNA|Merlin|Merlin1_HS	-	chr17	39462038	39535146	CDK12|ENST00000447079.4	+	39462038,39470878,39490556,39492750,39494523,39501249,39509704,39511528,39515730,39517439,39519955,39524673,39525863,39530603	39463117,39471763,39490733,39492890,39494694,39501439,39509761,39511630,39515808,39517556,39520087,39524885,39526316,39535146	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	49086416	49086547	49086546	+	High_confidence	21	26	131	4.064622	5.745580	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.893130
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	85773489	85773493	85773489	-	RAMPAGE_only	3	3	6	0.186166	2.584963	chr11	85773277	85773644	LINE|L2|L2c	+	chr11	85694220	85758069	SYTL2|NM_001162951.2	-	85694220,85696182,85697978,85700514,85704857,85707428,85709330,85711112,85714412,85718789,85720857,85727895,85733938,85736500,85737574,85745636,85748271,85757624	85695340,85696388,85698078,85700593,85705028,85707531,85709500,85711232,85714507,85718843,85720959,85727967,85734742,85736612,85737656,85745772,85748423,85758069	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	52891232	52891254	52891232	-	High_confidence	2	2	11	0.341304	2.646439	chr19	52891172	52891371	SINE|Alu|AluSz	+	chr19	52876171	52891346	ZNF320|NM_207333.2	-	52876171,52888126,52890240,52891228	52881983,52888253,52890328,52891346	0.818182
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	42809475	42809483	42809475	+	High_confidence	3	3	9	0.279249	2.947703	chr3	42809252	42809581	LTR|ERV1|MER39	-	chr3	42809475	42867283	ACKR2|ENST00000422265.5	+	42809475,42819630,42864465	42809532,42819711,42867283	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	126600248	126600249	126600248	+	High_confidence	6	7	7	0.217194	2.584963	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	220032394	220032406	220032394	-	RAMPAGE_only	2	2	11	0.341304	3.321928	chr1	220032081	220032353	SINE|Alu|AluY	-	chr1	219987295	220046451	EPRS|ENST00000609181.5	-	219987295,219988589,219996982,220001137,220005247,220006105,220007201,220010945,220018125,220018448,220018994,220019987,220022346,220024263,220025131,220030385,220032386,220033501,220034913,220040184,220046342	219987404,219988823,219997342,220001255,220005360,220006313,220007338,220011056,220018146,220018508,220019079,220020221,220022518,220024456,220025258,220030480,220032526,220033658,220035013,220040269,220046451	0.909091
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	28538676	28538695	28538686	-	High_confidence	6	8	18	0.558498	3.337175	chr16	28538407	28538698	SINE|Alu|AluJo	+	chr16	28537506	28538951	NUPR1|ENST00000567646.1	-	28537506,28538005,28538525,28538795	28537669,28538155,28538654,28538951	0.722222
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	73713382	73713394	73713382	-	High_confidence	3	3	7	0.217194	2.807355	chr14	73712618	73713668	LTR|Gypsy|MamGyp-int	-	chr14	73711782	73714372	PNMA1|ENST00000316836.4	-	73711782	73714372	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	44887683	44887691	44887690	+	RAMPAGE_only	4	4	9	0.279249	2.500000	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885713	44906504	YWHAB|ENST00000631616.1	+	44885713,44901530,44904967,44906381	44887742,44904116,44906096,44906504	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	52615423	52615438	52615423	-	High_confidence	5	6	19	0.589525	4.058814	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.894737
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	155478133	155478155	155478144	-	RAMPAGE_only	6	6	16	0.496442	2.899397	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	73272240	73272241	73272240	+	High_confidence	4	4	7	0.217194	2.584963	chr11	73272218	73272327	SINE|MIR|MIRc	+	chr11	73272201	73298617	P2RY6|ENST00000393590.2	+	73272201,73296484	73272466,73298617	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	15657883	15657884	15657883	+	RAMPAGE_only	7	7	7	0.217194	2.521641	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	30729159	30729214	30729159	+	RAMPAGE_only	4	4	20	0.620553	3.584184	chr8	30729079	30733679	LTR|ERV1|HERVE-int	+	chr8	30732246	30766470	UBXN8|ENST00000620074.4	+	30732246,30744327,30751395,30753034,30754664,30756764,30760887,30763272,30766226	30732370,30744460,30751518,30753105,30754787,30756887,30760929,30763347,30766470	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	18063185	18063216	18063215	-	High_confidence	5	5	21	0.651581	3.594466	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	23612362	23612528	23612517	+	RAMPAGE_only	9	9	90	2.792488	5.638325	chr14	23612270	23612982	LINE|L2|L2a	-	chr14	23619200	23620012	AL135999.3|ENST00000610501.1	+	23619200	23620012	0.700000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	49646471	49646519	49646495	-	High_confidence	17	18	155	4.809285	5.444104	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.845161
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	143964920	143964946	143964920	-	High_confidence	3	3	9	0.279249	3.169925	chr6	143964544	143965292	LTR|Gypsy|MamGyp-int	+	chr6	143940337	143964868	PLAGL1|ENST00000367572.3	-	143940337,143960468,143964786	143942663,143960556,143964868	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	80059915	80059933	80059918	+	High_confidence	151	177	358	11.107898	5.604036	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.983240
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	56493999	56494039	56493999	+	RAMPAGE_only	6	6	24	0.744664	4.088779	chr20	56493955	56494087	SINE|MIR|MIR	+	chr20	56468677	56517201	RTF2|ENST00000449062.1	+	56468677,56472325,56473300,56474677,56476984,56484110,56513314,56516934,56517105	56468766,56472415,56473395,56474771,56477124,56484189,56513428,56516989,56517201	0.625000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	40772059	40772060	40772059	+	RAMPAGE_only	19	19	19	0.589525	3.090033	chr19	40771932	40772225	SINE|Alu|AluJo	-	chr19	40775176	40777493	MIA|NM_001202553.1	+	40775176,40775536,40775751,40776968,40777396	40775211,40775669,40775885,40777079,40777493	0.947368
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	160350180	160350229	160350228	+	High_confidence	3	3	14	0.434387	3.700440	chr1	160350194	160350231	LINE|RTE-BovB|MamRTE1	-	chr1	160350104	160355753	NCSTN|ENST00000424645.6	+	160350104,160351287,160351695,160352053,160352886,160353159,160354117,160355654	160350250,160351372,160351805,160352206,160352991,160353237,160354290,160355753	0.785714
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	51366133	51366160	51366151	-	RAMPAGE_only	3	3	11	0.341304	3.027169	chr1	51366072	51366367	SINE|Alu|AluJb	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.909091
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	16712861	16712933	16712889	-	High_confidence	23	25	131	4.064622	5.935420	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.893130
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	86453161	86453207	86453202	-	High_confidence	83	93	681	21.129828	6.528996	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.726872
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	68882879	68883037	68882879	-	High_confidence	32	34	275	8.532603	6.141645	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.927273
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	71024055	71024075	71024055	+	High_confidence	13	13	45	1.396244	4.015891	chr2	71020399	71024471	LTR|ERV1|HERVE-int	+	chr2	71024074	71029931	OR7E91P|NR_002185.3	+	71024074,71024305,71028915	71024200,71024394,71029931	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	20775746	20775759	20775746	-	RAMPAGE_only	9	9	15	0.465415	3.182006	chr1	20775005	20775936	DNA|TcMar-Tigger|Tigger3b	+	chr1	20775449	20780541	HP1BP3|ENST00000487117.1	-	20775449,20779811,20780344	20776750,20779911,20780541	0.533333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	140700445	140700452	140700445	+	High_confidence	1071	1319	2434	75.521293	4.927429	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.986853
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	65024461	65024467	65024466	-	High_confidence	4	4	13	0.403359	3.418296	chr4	65024156	65024597	LTR|ERVL-MaLR|MSTB1	-	chr4	64914280	65024485	LINC02232|ENST00000509932.2	-	64914280,64926591,64937606,64939272,64939955,64977488,65004402,65008781,65024236	64917643,64926661,64937839,64939365,64940036,64977629,65004501,65008912,65024485	0.769231
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	120125620	120125645	120125627	+	High_confidence	10	10	51	1.582410	4.936940	chr8	120125674	120125869	DNA|hAT-Tip100?|MamRep1879	+	chr8	120125143	120277865	COL14A1|ENST00000432943.6	+	120125143,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120277484	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120277865	0.960784
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	48683361	48683363	48683361	+	High_confidence	27	47	47	1.458299	4.208987	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.936170
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	193656716	193656763	193656716	+	RAMPAGE_only	16	16	31	0.961857	4.760648	chr3	193656664	193656914	DNA|hAT-Charlie|MER102a	-	chr3	193648765	193659514	OPA1|ENST00000482865.1	+	193648765,193654861,193657079,193658886,193659481	193648871,193655027,193657232,193658995,193659514	0.677419
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	101670407	101670409	101670407	+	RAMPAGE_only	4	8	8	0.248221	3.000000	chr12	101670426	101670659	LINE|CR1|L3b	+	chr12	101666202	101685811	MYBPC1|ENST00000549608.1	+	101666202,101667731,101670320,101673426,101675291,101677234,101678101,101680342,101685581	101666797,101667899,101670409,101673622,101675431,101677394,101678238,101680529,101685811	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	50016033	50016098	50016097	-	RAMPAGE_only	5	5	22	0.682608	3.748995	chr19	50016092	50016166	DNA|hAT-Ac|OldhAT1	-	chr19	49994862	50020647	VRK3|ENST00000599342.5	-	49994862,50000789,50007568,50009235,50015731,50016023,50020584	49994919,50000854,50007826,50009385,50015793,50016163,50020647	0.954545
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	63587325	63587346	63587345	+	High_confidence	4	4	12	0.372332	3.418296	chr18	63587176	63587346	DNA|hAT-Charlie|MER5B	-	chr18	63587365	63599199	SERPINB13|ENST00000344731.9	+	63587365,63588650,63589655,63592347,63592853,63594354,63595028,63596958	63587450,63588832,63589715,63592476,63592971,63594497,63595184,63599199	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	103605823	103605825	103605823	-	RAMPAGE_only	8	11	14	0.434387	3.546594	chr10	103605815	103605885	LINE|CR1|L3	+	chr10	103599519	103693623	SH3PXD2A|ENST00000315994.6	-	103599519,103605797,103611580,103612852,103617196,103627088,103660982,103668607,103673437,103693027,103693333,103693599	103603789,103605917,103611630,103613190,103617314,103627202,103661114,103668652,103673556,103693056,103693478,103693623	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	6590257	6590325	6590257	+	High_confidence	5	5	30	0.930829	4.506891	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	26399412	26399443	26399442	-	High_confidence	4	4	11	0.341304	3.277613	chr7	26399411	26399720	DNA|hAT-Charlie|MER33	+	chr7	26372018	26399418	LOC105375304|NR_136272.1	-	26372018,26399340	26372568,26399418	0.545455
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	64990168	64990172	64990168	-	High_confidence	3	4	8	0.248221	2.750000	chr7	64990099	64990323	LINE|L1|L1PREC2	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	3062922	3062978	3062922	-	High_confidence	9	11	40	1.241106	4.580023	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.975000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	21841544	21841661	21841544	-	RAMPAGE_only	9	11	102	3.164820	5.150509	chr1	21841366	21841498	SINE|MIR|MIRb	-	chr1	21822244	21896271	MSTRG.331.2	-	21822244,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884677,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896271	0.990196
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	206052884	206052915	206052884	+	RAMPAGE_only	4	4	13	0.403359	2.777363	chr1	206052518	206053000	LTR|ERV1|LTR2B	+	chr1	206037246	206053334	BX571818.1|ENST00000585172.2	+	206037246,206051852,206053020	206037299,206052001,206053334	0.615385
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	9658028	9658043	9658029	-	RAMPAGE_only	3	4	10	0.310276	2.641604	chr19	9657864	9657989	SINE|Alu|FLAM_C	-	chr19	9652278	9675044	ZNF562|ENST00000453372.6	-	9652278,9656546,9658008,9659378,9660719,9675014	9653881,9656653,9658135,9659467,9660874,9675044	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	48489293	48489331	48489315	+	RAMPAGE_only	6	6	17	0.527470	3.125000	chr12	48489156	48489319	DNA|hAT-Tip100|MamTip3	+	chr12	48490811	48496386	C12orf54|ENST00000549398.5	+	48490811,48492946,48494797,48495551,48496180	48490836,48492995,48494979,48495595,48496386	0.823529
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	70676494	70676533	70676494	-	RAMPAGE_only	1	1	10	0.310276	2.947703	chr15	70676255	70676461	SINE|MIR|MIRb	-	chr15	70669093	70671973	UACA|ENST00000559290.1	-	70669093,70671038	70669462,70671973	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	27306486	27306491	27306490	+	RAMPAGE_only	4	6	8	0.248221	3.000000	chr17	27306202	27306514	SINE|Alu|AluSz	-	chr17	27294113	27307789	WSB1|ENST00000581185.5	+	27294113,27301787,27303366,27304779,27306781	27294435,27301956,27303635,27304911,27307789	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	53464773	53464834	53464815	+	RAMPAGE_only	4	4	32	0.992885	4.481728	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.781250
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	29647337	29647371	29647360	+	High_confidence	14	14	38	1.179051	4.563717	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.921053
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	154089599	154089607	154089602	-	RAMPAGE_only	8	8	24	0.744664	3.803509	chr3	154089524	154089737	DNA|hAT-Charlie|MER102a	-	chr3	154026577	154085263	ARHGEF26-AS1|ENST00000630930.2	-	154026577,154030276,154084681	154026642,154030379,154085263	0.541667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	125337345	125337369	125337368	+	RAMPAGE_only	3	3	7	0.217194	2.584963	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125298921	125362746	GAPVD1|ENST00000312123.13	+	125298921,125301982,125305062,125307412,125307690,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176,125342218,125346818,125349389,125350294,125350712,125354653,125355643,125359419,125360527,125362605	125299106,125302826,125305149,125307547,125307880,125312612,125321499,125323923,125326589,125330218,125332060,125332629,125337095,125337591,125341264,125342299,125346941,125349519,125350404,125350872,125354841,125355857,125359492,125360725,125362746	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	75396547	75396548	75396547	-	RAMPAGE_only	5	5	8	0.248221	3.000000	chr15	75396541	75396779	SINE|MIR|MIR	+	chr15	75369378	75451585	SIN3A|NM_015477.2	-	75369378,75375664,75380628,75381612,75384263,75389651,75392241,75394679,75396257,75400039,75400729,75401851,75407054,75409835,75410133,75411491,75412762,75414204,75422646,75430186,75451359	75372209,75375872,75380723,75381705,75384437,75389821,75392815,75394863,75396496,75400156,75400940,75401970,75407144,75409991,75410286,75411743,75413045,75414311,75422823,75430408,75451585	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	31466366	31466376	31466375	-	High_confidence	6	6	14	0.434387	3.546594	chr5	31466363	31466531	DNA|TcMar-Mariner|MARNA	-	chr5	31449368	31466486	DROSHA|ENST00000507174.1	-	31449368,31451532,31464235,31466181	31449419,31451640,31464343,31466486	0.785714
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	7566512	7566526	7566525	-	High_confidence	3	3	8	0.248221	2.521641	chr7	7566191	7566577	LINE|L2|L2b	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	44234212	44234217	44234216	+	RAMPAGE_only	5	5	11	0.341304	2.921928	chr11	44234250	44234382	SINE|MIR|MIR3	+	chr11	44096222	44245425	EXT2|ENST00000343631.3	+	44096222,44107682,44109193,44114184,44124788,44126815,44130044,44171610,44197828,44206792,44232352,44234114,44236292,44244148	44096321,44108248,44109283,44114301,44124984,44126955,44130138,44171742,44198018,44206959,44232496,44234243,44236375,44245425	0.818182
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	55101905	55101939	55101905	-	RAMPAGE_only	3	3	12	0.372332	3.251629	chr4	55101500	55101889	LINE|L1|L1PA10	-	chr4	55078530	55122921	KDR|ENST00000647068.1	-	55078530,55081955,55082535,55087606,55088867,55089373,55089690,55089955,55092616,55094801,55095576,55096228,55097661,55098136,55098696,55101896,55102361,55104642,55105831,55106686,55107736,55110402,55110653,55113303,55114125,55114873,55115280,55118603,55121096,55122841	55080163,55082041,55082635,55087758,55088973,55089473,55089802,55090078,55092714,55094955,55095665,55096342,55097766,55098272,55098803,55102028,55102508,55104984,55105940,55106810,55107893,55110566,55110768,55113481,55114265,55115042,55115411,55118800,55121190,55122921	0.583333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	23636315	23636330	23636315	+	High_confidence	3	4	13	0.403359	3.334679	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636334	23645639	DHRS2|ENST00000250383.10	+	23636334,23638826,23639178,23639793,23643151,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645639	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	111387771	111387818	111387800	-	RAMPAGE_only	6	6	18	0.558498	3.683542	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.555556
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	150114599	150114766	150114765	-	RAMPAGE_only	14	14	165	5.119562	6.143514	chr5	150114760	150114896	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.963636
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	33864090	33864126	33864090	+	High_confidence	5	6	17	0.527470	3.807764	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33863895	33866468	PDCD6IP|ENST00000473593.1	+	33863895,33865242,33866350	33864129,33865430,33866468	0.588235
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	118835992	118835993	118835992	-	High_confidence	5	7	7	0.217194	2.521641	chr4	118835727	118836038	LINE|L1|L1M4b	+	chr4	118722822	118836138	SEC24D|ENST00000280551.10	-	118722822,118728560,118731315,118732732,118738260,118739148,118740662,118740940,118743987,118744943,118751995,118752696,118757720,118764801,118768172,118797682,118805842,118815027,118815450,118817263,118824619,118833578,118835940	118723655,118728650,118731507,118732912,118738379,118739287,118740808,118741037,118744158,118745060,118752089,118752888,118757845,118764917,118768311,118797810,118805954,118815155,118815726,118817412,118824749,118833737,118836138	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	26962069	26962070	26962069	+	RAMPAGE_only	4	4	6	0.186166	2.584963	chr9	26962113	26962223	SINE|Alu|AluJr	+	chr9	26956478	27036800	IFT74|ENST00000429045.6	+	26956478,26961948,26978127,26980570,26984256,26984498,26988668,26990133,27009019,27011905,27016906,27018646,27029024,27036449	26956516,26962087,26978263,26980619,26984355,26984559,26988728,26990195,27009158,27011968,27017050,27018687,27029104,27036800	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	33130007	33130048	33130047	+	RAMPAGE_only	7	7	30	0.930829	3.869331	chr3	33130079	33130160	SINE|MIR|MIRb	+	chr3	33120341	33147773	MSTRG.16004.4	+	33120341,33124407,33134181,33142394	33120493,33124579,33134265,33147773	0.733333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	135965718	135965749	135965723	+	High_confidence	57	80	286	8.873907	6.293415	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.986014
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	50172562	50172595	50172594	+	High_confidence	2	2	7	0.217194	2.807355	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172589	50176671	LINC01273|ENST00000411453.2	+	50172589,50172922,50176280	50172788,50173017,50176671	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	44951147	44951148	44951147	+	RAMPAGE_only	20	21	28	0.868774	4.307355	chrX	44950752	44951268	LTR|ERV1|LTR10D	+	chrX	44873551	45111411	KDM6A|ENST00000621147.4	+	44873551,44873923,44961283,44974665,45010960,45020609,45034930,45037654,45053828,45059005,45059246,45061323,45063421,45069578,45076696,45078399,45107456,45110078,45111381	44873712,44873987,44961392,44974715,45011019,45020730,45034985,45037689,45053955,45059104,45059466,45061419,45063817,45070357,45076826,45078493,45107536,45110249,45111411	0.607143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	1883348	1883349	1883348	+	RAMPAGE_only	28	28	28	0.868774	4.208966	chr11	1883278	1883384	SINE|MIR|MIR1_Amn	-	chr11	1880676	1892267	LSP1|ENST00000485341.5	+	1880676,1881431,1883418,1883931,1884279,1884499,1886731,1887236,1887473,1891772	1881363,1881596,1883560,1884024,1884323,1884581,1886866,1887314,1887576,1892267	0.785714
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	97241159	97241170	97241165	+	RAMPAGE_only	5	5	18	0.558498	3.616875	chr2	97241018	97241180	LINE|L2|L2c	+	chr2	97212726	97249050	ANKRD36|ENST00000421946.2	+	97212726,97213541,97215300,97215424,97217176,97217299,97219049,97219173,97224808,97233729,97241265,97243845,97245156,97247475	97213447,97213614,97215329,97215497,97217205,97217372,97219078,97219246,97224879,97233871,97241479,97244029,97246071,97249050	0.944444
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	212688451	212688487	212688482	-	High_confidence	4	4	10	0.310276	3.169925	chr1	212688077	212688769	LINE|CR1|L3	-	chr1	212686417	212687509	BATF3|ENST00000471382.5	-	212686417,212687466	212686979,212687509	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	43734595	43734613	43734595	-	High_confidence	6	6	22	0.682608	3.108695	chr19	43734554	43734683	DNA|hAT-Charlie|Charlie4z	-	chr19	43733423	43734825	SMG9|ENST00000598860.1	-	43733423,43733625,43734388	43733452,43733733,43734825	0.772727
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	101333305	101333306	101333305	-	High_confidence	4	4	6	0.186166	2.584963	chr3	101333261	101333534	SINE|Alu|AluJr	+	chr3	101325539	101333269	SENP7|ENST00000394085.7	-	101325539,101327665,101328477,101328645,101330333,101331984,101332769	101326080,101327816,101328546,101328689,101330386,101332109,101333269	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	67387423	67387458	67387433	-	RAMPAGE_only	7	7	19	0.589525	3.461320	chr10	67387044	67393069	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.631579
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	25244078	25244082	25244081	-	High_confidence	6	7	14	0.434387	3.039149	chr1	25244059	25244116	SINE|Alu|Alu	-	chr1	25242248	25244105	RSRP1|ENST00000569495.5	-	25242248,25242538,25243549	25242426,25242705,25244105	0.928571
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	52569721	52569722	52569721	-	High_confidence	7	7	7	0.217194	2.521641	chr15	52569688	52569809	LINE|L2|L2	+	chr15	52551808	52569883	ARPP19|ENST00000561971.1	-	52551808,52557099,52564189,52568847,52569115,52569721	52552104,52557222,52564246,52568902,52569221,52569883	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	55688336	55688344	55688336	+	RAMPAGE_only	3	7	9	0.279249	3.169925	chr17	55688144	55688497	LTR|ERVL-MaLR|THE1B	+	chr17	55750978	55777374	PCTP|ENST00000268896.9	+	55750978,55767334,55771105,55773723,55774791,55776034	55751244,55767452,55771185,55773895,55774859,55777374	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100138810	100138833	100138810	+	RAMPAGE_only	9	9	27	0.837746	3.708048	chr14	100138741	100139027	LINE|L2|L2b	-	chr14	100019381	100140117	EVL|ENST00000544450.6	+	100019381,100084686,100097480,100123538,100126706,100128518,100129562,100132718,100135904,100137577,100137739	100019687,100084855,100097658,100123602,100126771,100128748,100129684,100132779,100135968,100137644,100140117	0.851852
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	33141950	33141974	33141950	-	RAMPAGE_only	3	3	7	0.217194	2.807355	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33134412	33161421	CSTF3|ENST00000526480.1	-	33134412,33136111,33141666,33141884,33161298	33134469,33136212,33141762,33141986,33161421	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	65053820	65053923	65053820	-	RAMPAGE_only	29	29	81	2.513239	5.097304	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64991912	65072260	CDH11|ENST00000567934.5	-	64991912,64992914,64998561,65004641,65053803,65071988	64991935,64993034,64998856,65005041,65053928,65072260	0.851852
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	15001807	15001826	15001807	+	High_confidence	4	5	10	0.310276	2.641604	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	8673714	8673742	8673738	+	RAMPAGE_only	17	18	57	1.768576	4.532206	chr18	8673446	8674028	LTR|ERV1|MER65-int	-	chr18	8705660	8828946	MTCL1|ENST00000306329.15	+	8705660,8718423,8720337,8777832,8783529,8785935,8796231,8798096,8806892,8812978,8818962,8821466,8824698,8828907	8706713,8718648,8720496,8777892,8784843,8786091,8796462,8798291,8807060,8813233,8819259,8821498,8826232,8828946	0.561404
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	33838256	33838293	33838292	+	RAMPAGE_only	3	3	13	0.403359	3.546594	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.923077
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	23636363	23636367	23636366	+	High_confidence	645	662	994	30.841481	6.702393	chr14	23635626	23636652	LTR|ERV1|LTR12D	+	chr14	23636366	23645637	DHRS2|ENST00000556701.5	+	23636366,23638826,23639178,23639793,23641665,23644110,23644408,23644826,23645141	23636772,23639004,23639356,23639895,23643219,23644162,23644543,23644882,23645637	0.935614
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	60899157	60899193	60899157	+	RAMPAGE_only	3	3	15	0.465415	3.182006	chr2	60899203	60899490	SINE|Alu|AluJb	+	chr2	60894396	60901083	REL|ENST00000642725.1	+	60894396,60898969,60900991	60894545,60900884,60901083	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	2990740	2990749	2990748	-	RAMPAGE_only	11	12	24	0.744664	3.323935	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	0.916667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	159005961	159005962	159005961	+	High_confidence	7	7	7	0.217194	2.807355	chr1	159005996	159006106	LTR|ERVL|LTR47B2	+	chr1	159005961	159016653	IFI16|ENST00000426592.6	+	159005961,159010002,159014660,159015871,159016532	159006041,159010161,159014945,159015987,159016653	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	64807572	64807613	64807612	-	RAMPAGE_only	5	5	14	0.434387	3.026987	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64804374	64806368	MEN1|ENST00000478548.1	-	64804374,64805033,64805634	64804816,64805198,64806368	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	77285007	77285037	77285036	-	RAMPAGE_only	9	9	38	1.179051	4.787144	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.789474
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	17374951	17374952	17374951	+	High_confidence	9	9	11	0.341304	3.277613	chr7	17374884	17375084	SINE|MIR|MIRb	+	chr7	17374916	17467256	KCCAT333|NR_110015.1	+	17374916,17450994,17466151	17375055,17451061,17467256	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	218560876	218560881	218560880	-	RAMPAGE_only	3	3	7	0.217194	2.521641	chr2	218560567	218560864	DNA|hAT-Charlie|MER102a	-	chr2	218454814	218568291	USP37|ENST00000418019.5	-	218454814,218455579,218457091,218459789,218463305,218466009,218474629,218476839,218479649,218482069,218485663,218488303,218495759,218497733,218498025,218509978,218529955,218534608,218546220,218546918,218549808,218553552,218558497,218560819,218562717,218568177	218455017,218455718,218457161,218459905,218463366,218466176,218474885,218476981,218479715,218482234,218485743,218488421,218495950,218497857,218498157,218510140,218530040,218534706,218546298,218547091,218549909,218553724,218558677,218560883,218562813,218568291	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	82081606	82081652	82081606	-	RAMPAGE_only	6	6	18	0.558498	3.614369	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82078339	82098187	FASN|ENST00000634990.1	-	82078339,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086259,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82088968,82089249,82089631,82090374,82090881,82091221,82092454,82092696,82092896,82093218,82093597,82095319,82096318,82098120	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82088876,82089172,82089384,82089726,82090564,82091069,82091684,82092589,82092812,82093019,82093419,82093771,82095472,82096452,82098187	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	89210461	89210513	89210461	+	RAMPAGE_only	2	2	14	0.434387	3.700440	chr3	89210434	89210500	DNA|hAT-Ac|OldhAT1	+	chr3	89107675	89479659	EPHA3|ENST00000494014.1	+	89107675,89127208,89209859,89340915,89341754,89395836,89399317,89407268,89408066,89413140,89419204,89429105,89431149,89449224,89450176,89472463,89479396	89107836,89127273,89210520,89341071,89342090,89395961,89399480,89407371,89408131,89413266,89419390,89429167,89431359,89449374,89450370,89472522,89479659	0.928571
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	30568893	30568917	30568916	-	RAMPAGE_only	7	10	20	0.620553	3.511085	chr7	30568321	30569340	LTR|ERV1|MER4-int	+	chr7	30558095	30573088	GARS-DT|ENST00000584621.5	-	30558095,30561465,30563730,30568832,30572999	30559355,30562128,30563998,30568989,30573088	0.700000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	182928788	182928789	182928788	-	RAMPAGE_only	13	15	18	0.558498	3.524945	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	119803537	119803538	119803537	+	RAMPAGE_only	6	7	7	0.217194	2.807355	chr10	119803193	119803942	LINE|L1|L1M5	-	chr10	119750876	119828360	INPP5F|ENST00000647699.1	+	119750876,119781634,119791516,119791868,119792156,119796714,119797460,119798542,119804172,119805383,119806359,119807931,119810099,119811756,119820845,119822430,119823070,119823814,119826630	119751156,119781771,119791645,119792036,119792213,119796913,119797640,119798610,119804297,119805461,119806480,119808060,119810217,119811955,119820917,119822504,119823199,119823902,119828360	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	140436984	140437011	140436984	-	RAMPAGE_only	2	2	12	0.372332	3.251629	chr2	140436639	140437009	LTR|Gypsy|LTR81A	+	chr2	140231422	142131701	LRP1B|ENST00000389484.7	-	140231422,140234785,140238151,140239441,140247085,140270241,140274423,140297807,140314934,140321962,140323892,140325761,140334452,140335614,140350796,140352952,140356341,140357978,140358820,140364660,140370709,140371178,140373007,140378179,140385892,140442503,140444329,140444562,140450567,140456454,140457462,140475137,140485342,140487616,140492607,140495564,140501686,140502962,140506795,140509927,140514652,140516888,140525843,140526236,140534020,140536580,140540972,140541778,140598630,140601449,140700249,140701720,140702140,140702426,140715972,140716681,140769212,140770880,140776097,140813656,140839990,140840917,140850101,140851651,140867589,140868098,140883816,140886137,140902919,140907876,140922964,140950234,140951859,140982159,140989531,140993994,141005334,141013555,141015695,141019921,141048985,141055115,141058882,141062050,141188420,141229182,141247225,141254521,141480395,141810278,142130647	140233326,140234884,140238296,140239532,140247162,140270346,140274598,140297969,140315099,140322088,140324066,140325878,140334559,140335838,140351038,140353072,140356476,140358116,140358946,140364783,140370842,140371285,140373137,140378286,140386009,140442623,140444449,140444679,140450661,140456603,140457651,140475337,140485524,140487739,140492693,140495748,140501874,140503103,140506918,140510056,140514772,140517011,140525993,140526350,140534140,140536709,140541098,140541971,140598835,140601639,140700621,140701845,140702292,140702553,140716102,140716816,140769344,140771006,140776238,140813806,140840085,140841092,140850329,140851783,140867834,140868263,140884021,140886335,140903165,140908077,140923147,140950402,140951940,140982276,140989657,140994135,141005457,141013745,141015915,141020102,141049222,141055259,141059054,141062273,141188583,141229440,141247354,141254641,141480533,141810401,142131701	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	85378112	85378113	85378112	-	High_confidence	19	20	20	0.620553	3.070847	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.950000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	74070871	74070885	74070873	-	High_confidence	9	13	20	0.620553	3.681881	chr11	74070756	74071175	LINE|L2|L2c	+	chr11	74049518	74070869	C2CD3|ENST00000542484.1	-	74049518,74054606,74057405,74070505	74049542,74054671,74057544,74070869	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	129399103	129399120	129399119	-	High_confidence	3	3	8	0.248221	2.521641	chr3	129399072	129399375	SINE|Alu|AluSx1	+	chr3	129382921	129399405	RPL32P3|ENST00000510078.5	-	129382921,129393634,129396216,129397039,129399007	129384218,129393795,129396420,129397140,129399405	0.625000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	5434859	5434870	5434859	-	RAMPAGE_only	6	6	13	0.403359	2.719295	chr7	5434708	5435090	LTR|ERVL-MaLR|MLT1B	-	chr7	5431334	5513752	FBXL18|ENST00000415009.5	-	5431334,5438489,5447725,5491230,5500487,5505411,5513656	5431502,5438651,5447843,5491449,5502031,5505630,5513752	0.692308
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	46243260	46243286	46243275	-	RAMPAGE_only	2	2	9	0.279249	2.750000	chr12	46243119	46243281	LINE|L1|L1ME4a	-	chr12	46196126	46239895	SLC38A1|ENST00000612161.4	-	46196126,46197719,46197918,46198624,46201097,46203009,46204300,46204531,46206079,46207154,46207528,46209053,46229152,46229563,46239678	46196276,46197817,46198060,46198743,46201198,46203089,46204417,46204590,46206162,46207236,46207621,46209127,46229268,46229639,46239895	0.555556
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	77285146	77285161	77285160	-	RAMPAGE_only	5	5	12	0.372332	2.751629	chr15	77285149	77285320	SINE|MIR|MIR	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	147839194	147839271	147839237	-	High_confidence	123	129	310	9.618571	5.556676	chr5	147839014	147839391	LTR|ERVL-MaLR|THE1C	-	chr5	147824579	147839231	SPINK1|NM_003122.4	-	147824579,147828021,147829598,147831522,147839133	147824706,147828128,147829630,147831768,147839231	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	2642919	2642959	2642919	-	RAMPAGE_only	3	3	12	0.372332	3.459432	chr11	2642482	2646252	LINE|L1|L1MA4A	-	chr11	2608327	2699994	KCNQ1OT1|ENST00000597346.1	-	2608327	2699994	0.916667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	117454949	117454973	117454949	+	High_confidence	18	21	36	1.116995	4.297300	chr5	117454728	117456383	LINE|L1|L1PA17	-	chr5	117455262	117479368	LINC00992|ENST00000504107.1	+	117455262,117471901,117478980	117455454,117471938,117479368	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	92914950	92914960	92914950	+	High_confidence	8	8	16	0.496442	3.500000	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.625000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	24968382	24968419	24968418	-	High_confidence	3	4	9	0.279249	2.750000	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24933005	24968453	TPTE2P1|ENST00000649209.1	-	24933005,24937576,24940506,24941986,24942931,24951396,24951594,24961748,24967391,24968205	24934663,24937770,24940785,24942108,24943021,24951488,24951770,24961849,24967453,24968453	0.555556
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	77143648	77143661	77143648	-	RAMPAGE_only	3	4	7	0.217194	2.521641	chr15	77143312	77143869	LINE|L2|L2c	+	chr15	77108163	77252531	PEAK1|ENST00000312493.5	-	77108163,77133004,77158502,77178789,77252366	77115319,77133750,77158696,77182040,77252531	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	125416604	125416615	125416614	+	RAMPAGE_only	5	8	15	0.465415	2.556657	chr4	125416663	125416961	SINE|Alu|AluSq	+	chr4	125393935	125491768	FAT4|ENST00000335110.5	+	125393935,125398783,125406879,125408443,125414883,125416447,125434244,125446298,125448460,125468511,125476170,125477154,125481520,125487344,125489900	125394004,125398915,125407141,125408794,125415806,125416622,125434425,125446543,125452810,125468819,125476256,125477393,125481738,125487606,125491768	0.933333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	39809803	39809879	39809856	-	High_confidence	9	10	66	2.047825	4.436562	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.924242
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	93455182	93455185	93455184	+	RAMPAGE_only	7	12	12	0.372332	3.418296	chr13	93453484	93455350	LTR|ERV1|LTR12C	-	chr13	93226841	94407401	GPC6|ENST00000377047.8	+	93226841,93545262,93830153,94027728,94286348,94305979,94382413,94398465,94403014	93227616,93545421,93830545,94027894,94286479,94306123,94382550,94398641,94407401	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	122074023	122074156	122074155	-	RAMPAGE_only	11	13	69	2.140908	4.861955	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065943	122076083	LOX|ENST00000505593.5	-	122065943,122070052,122070493,122074012,122075403,122076017	122066749,122070168,122070589,122074169,122075541,122076083	0.985507
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	49657346	49657356	49657348	-	High_confidence	5	8	14	0.434387	3.392747	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.785714
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	217937115	217937136	217937115	-	High_confidence	6	6	11	0.341304	3.459432	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.636364
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	166850177	166850235	166850222	+	RAMPAGE_only	6	6	35	1.085968	4.476064	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.942857
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	8701804	8701819	8701808	+	RAMPAGE_only	3	3	10	0.310276	2.641604	chr18	8701808	8702158	LTR|ERVL|LTR33A	-	chr18	8705660	8828946	MTCL1|ENST00000306329.15	+	8705660,8718423,8720337,8777832,8783529,8785935,8796231,8798096,8806892,8812978,8818962,8821466,8824698,8828907	8706713,8718648,8720496,8777892,8784843,8786091,8796462,8798291,8807060,8813233,8819259,8821498,8826232,8828946	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	6853880	6853900	6853886	+	High_confidence	5	6	16	0.496442	3.906891	chr17	6853729	6854409	LINE|L1|L1PBa1	+	chr17	6853860	6902192	ALOX12P2|ENST00000574727.5	+	6853860,6854213,6892002,6894317,6894883,6895095,6895342,6896315,6896553,6898528,6898799,6899390,6899592,6899867	6854060,6854435,6892075,6894513,6895006,6895199,6895503,6896459,6896763,6898698,6898929,6899490,6899760,6902192	0.562500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	81192631	81192712	81192681	-	RAMPAGE_only	8	8	44	1.365216	4.897081	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.977273
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	52542753	52542768	52542753	+	RAMPAGE_only	3	3	9	0.279249	2.500000	chr19	52542563	52542810	LTR|ERV1|MER4A1	-	chr19	52535984	52553436	ZNF808|ENST00000461321.1	+	52535984,52543265,52547511,52553106	52536046,52543347,52547638,52553436	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	102285725	102285740	102285725	-	RAMPAGE_only	2	2	8	0.248221	2.521641	chr8	102285712	102285783	DNA|hAT-Ac|OldhAT1	-	chr8	102252272	102412689	UBR5|NM_001282873.1	-	102252272,102257631,102258984,102261145,102261914,102264473,102265099,102266946,102268977,102270038,102271133,102272528,102275520,102275707,102276971,102278825,102279035,102280393,102281288,102285126,102285512,102286359,102287432,102288154,102289452,102293604,102293954,102294981,102295203,102295413,102295635,102296892,102297457,102298391,102298847,102299451,102299999,102304042,102305084,102311298,102311734,102312133,102312341,102313803,102314743,102323310,102326545,102327741,102329089,102329282,102342472,102345395,102346235,102346902,102360070,102360588,102361124,102361581,102412172	102254514,102257717,102259129,102261259,102262070,102264558,102265275,102267007,102269108,102270183,102271245,102272772,102275619,102275828,102277192,102278939,102279208,102280467,102281519,102285338,102285781,102286617,102287564,102288266,102289576,102293844,102294115,102295111,102295330,102295532,102295782,102296984,102297606,102298489,102298971,102299547,102300151,102304169,102305295,102311496,102311889,102312245,102312485,102313916,102314853,102323495,102326663,102327896,102329200,102329399,102342684,102345545,102346395,102347092,102360190,102360665,102361206,102361626,102412689	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	108768225	108768236	108768225	+	RAMPAGE_only	4	4	9	0.279249	3.000000	chr5	108768042	108768250	LINE|CR1|L3b	-	chr5	108748966	108843001	FER|ENST00000502752.1	+	108748966,108768092,108782662,108798123,108832769,108835707,108841830,108842261	108748993,108768238,108782755,108798389,108832943,108835807,108841868,108843001	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	45833293	45833310	45833309	-	High_confidence	3	6	10	0.310276	2.947703	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	113873346	113873431	113873387	-	High_confidence	11	11	45	1.396244	4.505473	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873351	LINC01268|ENST00000434296.2	-	113868012,113870668,113872993	113870343,113870734,113873351	0.755556
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	1659356	1659358	1659357	-	RAMPAGE_only	4	6	8	0.248221	2.807355	chr17	1659014	1659325	SINE|Alu|AluSx3	-	chr17	1650630	1684837	PRPF8|ENST00000572621.5	-	1650630,1651107,1651413,1651647,1653541,1653776,1655349,1656391,1656647,1658252,1658525,1659356,1659840,1660431,1660697,1660992,1661270,1661610,1661905,1673080,1673356,1673745,1674441,1675151,1675619,1675927,1676206,1676504,1676975,1677564,1678517,1678761,1679016,1679290,1679608,1680725,1680928,1681477,1681819,1682128,1683532,1684471	1650956,1651310,1651553,1651788,1653683,1654016,1655543,1656565,1656761,1658381,1658763,1659548,1660001,1660578,1660827,1661162,1661406,1661790,1662153,1673197,1673567,1673892,1674680,1675339,1675812,1676054,1676370,1676711,1677172,1677694,1678652,1678881,1679206,1679410,1679799,1680831,1681054,1681690,1682038,1682293,1683701,1684837	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	86453398	86453428	86453421	-	High_confidence	6	6	22	0.682608	3.481715	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016085	86453436	MAPK10|ENST00000641170.1	-	86016085,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453436	0.909091
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	159228712	159228731	159228730	+	RAMPAGE_only	12	12	19	0.589525	3.461320	chr2	159228445	159228758	LINE|L2|L2	+	chr2	159224392	159232659	TANC1|ENST00000496406.1	+	159224392,159229577	159228896,159232659	0.947368
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	98092595	98092625	98092614	+	RAMPAGE_only	10	10	33	1.023912	4.280639	chr6	98092422	98092646	LTR|ERVL|LTR16B2	-	chr6	97938788	98398771	AL589740.1|ENST00000607032.1	+	97938788,97969405,98076066,98099185,98275163,98292563,98294186,98398470	97938973,97969466,98076145,98099270,98275267,98292680,98294310,98398771	0.727273
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	7772741	7772742	7772741	+	High_confidence	12	13	17	0.527470	3.013071	chr1	7772606	7772911	SINE|Alu|AluSq2	+	chr1	7772706	7779806	VAMP3|ENST00000470357.1	+	7772706,7773441,7777159,7778117,7779625	7773198,7773511,7777318,7778169,7779806	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	65642912	65642951	65642912	+	High_confidence	7	8	74	2.296046	5.540402	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	91179462	91179526	91179525	-	High_confidence	791	1159	5583	173.227354	7.563450	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91145258	91179582	DCN|ENST00000393155.5	-	91145258,91151653,91153095,91157074,91158295,91164604,91178341,91179361	91146252,91151792,91153189,91157188,91158509,91164717,91178585,91179582	0.961490
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100834619	100834708	100834707	+	High_confidence	92	93	286	8.873907	6.023163	chr14	100834648	100834738	LINE|L2|L2b	+	chr14	100833763	100861021	MEG3|ENST00000524035.5	+	100833763,100836166,100845457,100860690	100836075,100836300,100845533,100861021	0.996503
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	67166507	67166508	67166507	+	High_confidence	5	5	8	0.248221	2.807355	chr15	67166449	67166543	LINE|L2|L2b	-	chr15	67166530	67181420	SMAD3|ENST00000558428.5	+	67166530,67170553,67181240	67166853,67170604,67181420	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	143070999	143071000	143070999	+	RAMPAGE_only	13	14	17	0.527470	3.381580	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143091361	143238352	ARHGAP15|ENST00000409869.5	+	143091361,143092156,143155476,143202133,143216383,143228580,143235945	143091422,143092258,143155655,143202202,143216445,143228668,143238352	0.529412
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	48492596	48492663	48492655	-	High_confidence	4	4	28	0.868774	4.280395	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.607143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	67791731	67791754	67791731	-	RAMPAGE_only	12	12	21	0.651581	4.106603	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701465	67833436	MSTRG.873.1	-	67701465,67707593,67777457,67831818	67705576,67707712,67777507,67833436	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	70323075	70323095	70323094	+	RAMPAGE_only	3	3	8	0.248221	2.521641	chr9	70323067	70323225	SINE|MIR|MIRb	+	chr9	70282471	70354888	MSTRG.23274.2	+	70282471,70286199,70297965,70300045,70305246,70314741,70315445,70318513,70318793,70323482,70324020,70344143,70347065,70347612,70347918,70350113,70350375,70352190	70282583,70286271,70298221,70300200,70305360,70314836,70315578,70318687,70318963,70323606,70324143,70346649,70347161,70347717,70348038,70350293,70350471,70354888	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	13123361	13123394	13123373	-	High_confidence	7	7	18	0.558498	2.771902	chr9	13123347	13123565	LINE|L1|L1ME3Cz	+	chr9	13115320	13123271	MPDZ|ENST00000437441.2	-	13115320,13119501,13121738,13122086,13123152	13115334,13119649,13121954,13122170,13123271	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	64242422	64242547	64242546	+	High_confidence	16	16	107	3.319958	5.797287	chr11	64242585	64242690	SINE|MIR|MIR1_Amn	+	chr11	64242115	64244135	FKBP2|NM_057092.2	+	64242115,64242383,64243198,64243450,64243840,64243967	64242213,64242558,64243311,64243497,64243876,64244135	0.953271
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	49646400	49646440	49646400	-	High_confidence	3	3	14	0.434387	3.546594	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	33141752	33141758	33141752	-	RAMPAGE_only	5	7	10	0.310276	2.721928	chr11	33141730	33141987	LINE|L1|HAL1ME	-	chr11	33084583	33161465	CSTF3|ENST00000323959.8	-	33084583,33085712,33085894,33086987,33090531,33092270,33096305,33096834,33098689,33099033,33099607,33102176,33103106,33105566,33105882,33105997,33107902,33108385,33141666,33141884,33161298	33085289,33085773,33085989,33087141,33090727,33092340,33096408,33096978,33098764,33099150,33099717,33102339,33103184,33105693,33105917,33106064,33108000,33108418,33141762,33141986,33161465	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	151539248	151539316	151539270	-	RAMPAGE_only	4	4	34	1.054940	4.477025	chr3	151539213	151539399	LTR|ERVL|LTR79	-	chr3	151433493	151458709	IGSF10|ENST00000282466.3	-	151433493,151442983,151444918,151453383,151457025,151458515	151438597,151443884,151449265,151453774,151457155,151458709	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	73908133	73908167	73908139	+	RAMPAGE_only	7	7	17	0.527470	3.500000	chr2	73908047	73908439	LTR|ERVL|LTR33	-	chr2	73892313	73919675	ACTG2|ENST00000438902.6	+	73892313,73892943,73901275,73902359,73908289,73909054,73913484,73914679,73916583,73919431	73892476,73893051,73901437,73902488,73908783,73909139,73913646,73914871,73916765,73919675	0.941176
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	28291847	28291848	28291847	+	High_confidence	12	14	14	0.434387	3.324863	chr3	28291835	28291983	LINE|L1|L1M7	-	chr3	28291800	28316407	CMC1|ENST00000468330.1	+	28291800,28292735,28294433,28316332	28291954,28292964,28294526,28316407	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	137268349	137268354	137268353	-	High_confidence	9	9	20	0.620553	3.787144	chr7	137267941	137268351	LTR|ERV1|HERVE_a-int	-	chr7	137227340	137268448	PTN|NM_001321386.1	-	137227340,137251229,137253463,137254858,137268323	137228075,137251391,137253637,137254974,137268448	0.850000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	53953907	53953994	53953933	-	RAMPAGE_only	11	14	73	2.265018	5.128346	chr20	53953927	53954294	LTR|ERVL-MaLR|MLT1K	+	chr20	53944782	53995929	BCAS1|ENST00000422805.1	-	53944782,53953431,53957431,53975388,53985286,53995011,53995891	53944996,53953695,53957497,53975430,53985499,53995056,53995929	0.917808
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	43502209	43502212	43502209	+	High_confidence	7	9	14	0.434387	2.931209	chr6	43502114	43502254	SINE|MIR|MIR3	-	chr6	43501525	43506553	TJAP1|ENST00000454762.1	+	43501525,43502282,43503400,43503622	43501687,43502349,43503508,43506553	0.928571
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	96285471	96285490	96285471	-	RAMPAGE_only	2	2	8	0.248221	2.521641	chr15	96285441	96285601	LINE|RTE-BovB|MamRTE1	+	chr15	96285067	96289265	AC016251.1|ENST00000624299.1	-	96285067	96289265	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	31376356	31376357	31376356	-	High_confidence	7	7	7	0.217194	2.521641	chr1	31376305	31376400	SINE|MIR|MIR3	+	chr1	31365890	31376850	FABP3|ENST00000482018.1	-	31365890,31367392,31369384,31372941,31376355,31376721	31365939,31367494,31369557,31373041,31376427,31376850	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	106450821	106450822	106450821	+	High_confidence	7	8	8	0.248221	2.807355	chr9	106450433	106450967	LTR|ERVL-MaLR|MLT1G1	+	chr9	106450815	106604795	LINC01505|ENST00000425709.1	+	106450815,106558471,106588376,106603755	106450888,106558583,106588464,106604795	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	142595944	142595964	142595944	+	High_confidence	2	2	11	0.341304	3.121928	chr3	142595959	142596147	DNA|hAT-Charlie|MER5A	+	chr3	142596386	142713664	PLS1|NM_001145319.1	+	142596386,142664201,142669389,142670992,142676156,142678031,142684005,142684252,142686283,142689617,142694468,142697952,142703867,142704462,142711500,142711871	142596509,142664307,142669553,142671122,142676289,142678113,142684171,142684395,142686376,142689813,142694547,142698067,142704001,142704586,142711625,142713664	0.909091
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	31355583	31355609	31355583	+	RAMPAGE_only	10	11	19	0.589525	4.247928	chr10	31355345	31356016	LINE|L2|L2b	-	chr10	31321689	31461180	MSTRG.2549.22	+	31321689,31387123,31461036	31374964,31387266,31461180	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	107580245	107580267	107580245	+	High_confidence	1059	1063	4349	134.939237	7.250164	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.915153
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	101217580	101217599	101217594	-	High_confidence	3	3	13	0.403359	3.238901	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	109546077	109546121	109546077	-	RAMPAGE_only	7	7	28	0.868774	4.093069	chr2	109545815	109546035	LINE|L2|L2a	-	chr2	109542796	109613657	SEPT10|NM_001321513.1	-	109542796,109553086,109564365,109565762,109567814,109574580,109585125,109585720,109593050,109613111	109546237,109553219,109564534,109565859,109567976,109574767,109585321,109585838,109593119,109613657	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	150118757	150118819	150118767	-	RAMPAGE_only	7	7	36	1.116995	4.171861	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.972222
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	34988764	34988792	34988764	-	High_confidence	3	3	14	0.434387	3.467720	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.928571
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	35657464	35657478	35657477	+	High_confidence	3	3	9	0.279249	2.500000	chr9	35657503	35657740	SINE|Alu|AluJb	+	chr9	35658289	35661503	CCDC107|NM_174923.2	+	35658289,35658575,35660400,35660556,35660745	35658485,35658727,35660461,35660647,35661503	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	33554843	33554899	33554843	+	RAMPAGE_only	3	3	16	0.496442	3.773557	chr7	33553757	33554962	LINE|L2|L2a	-	chr7	33344606	33605626	BBS9|ENST00000434373.3	+	33344606,33349067,33351218,33352858,33357854,33367766,33383665,33387991,33505462,33533953,33604864	33344634,33349170,33351323,33352873,33357995,33367862,33383838,33388144,33505645,33534176,33605626	0.812500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	169182798	169182836	169182832	-	High_confidence	5	5	21	0.651581	3.463281	chr6	169182607	169182961	LTR|ERVL-MaLR|THE1A	-	chr6	169175303	169182740	LINC02544|ENST00000564830.2	-	169175303,169179275,169182683	169175671,169179394,169182740	0.809524
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	30863476	30863494	30863493	+	RAMPAGE_only	13	24	37	1.148023	4.625409	chr13	30863143	30863642	LTR|ERVL|MER74A	+	chr13	30906174	30925572	MEDAG|NM_032849.3	+	30906174,30917402,30921013,30921560,30924310	30906793,30917512,30921126,30921846,30925572	0.513514
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	74197655	74197679	74197655	-	RAMPAGE_only	3	3	9	0.279249	2.750000	chrX	74196376	74198555	LINE|L1|L1MA9	-	chrX	74196350	74293574	FTX|ENST00000603037.2	-	74196350,74247331,74274341,74280393,74280930,74281701,74293351	74203909,74247424,74274410,74280494,74281085,74281848,74293574	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	7754076	7754077	7754076	+	High_confidence	33	33	39	1.210078	4.422442	chr4	7753883	7754236	LTR|ERVL-MaLR|THE1A	+	chr4	7754089	7778928	AFAP1-AS1|NR_026892.1	+	7754089,7772203	7754159,7778928	0.846154
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	41632127	41632159	41632140	-	High_confidence	5	5	21	0.651581	4.121928	chr18	41631742	41637769	LINE|L1|L1PA2	+	chr18	41521337	41632124	KC6|ENST00000599934.1	-	41521337,41525354,41564798,41631999	41521496,41525526,41564898,41632124	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	201790499	201790512	201790506	+	RAMPAGE_only	14	14	33	1.023912	4.671781	chr2	201790433	201790802	LINE|L2|L2-3_Crp	-	chr2	201806578	201895550	CDK15|ENST00000450471.6	+	201806578,201807493,201807857,201812482,201822808,201823664,201833847,201835642,201847380,201854873,201872277,201880027,201890802,201893300	201806787,201807643,201807952,201812562,201822903,201823727,201833971,201835763,201847474,201854937,201872326,201880167,201890927,201895550	0.606061
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	104763732	104763746	104763732	+	High_confidence	2	2	10	0.310276	2.947703	chr9	104763581	104763791	SINE|Alu|AluY	+	chr9	104763740	104777764	NIPSNAP3B|NR_130760.1	+	104763740,104766324,104768862,104772821,104772996,104777127	104764300,104766535,104769021,104772908,104773176,104777764	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	10175919	10175920	10175919	-	RAMPAGE_only	4	4	7	0.217194	2.521641	chr19	10175885	10176181	SINE|Alu|AluSx1	+	chr19	10133345	10194934	DNMT1|ENST00000592705.5	-	10133345,10134216,10135735,10136120,10137084,10137831,10138438,10139675,10140045,10140780,10141104,10142027,10143765,10146350,10148883,10149452,10149852,10151397,10151749,10154292,10154585,10154904,10155852,10156390,10159657,10159841,10160017,10160383,10162666,10163325,10166597,10168329,10173089,10173870,10175539,10177291,10180186,10180349,10180777,10182040,10194819	10133701,10134307,10135852,10136287,10137280,10138009,10138605,10139817,10140328,10140909,10141189,10142220,10143987,10146524,10149017,10149657,10149968,10151545,10151847,10154479,10154773,10155056,10155945,10156509,10159767,10159922,10160063,10160418,10162748,10163360,10166685,10168364,10173174,10173905,10175618,10177367,10180234,10180529,10180885,10182077,10194934	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	155478111	155478112	155478111	-	RAMPAGE_only	8	9	10	0.310276	2.921928	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	24930639	24930692	24930639	+	RAMPAGE_only	25	25	184	5.709087	5.478334	chr20	24927944	24932579	LTR|ERV1|HERVE-int	+	chr20	24931839	24932983	AL035661.1|ENST00000620459.1	+	24931839	24932983	0.538043
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	69045741	69045742	69045741	-	RAMPAGE_only	6	7	7	0.217194	2.584963	chr17	69045576	69045948	LTR|ERVL-MaLR|THE1D	-	chr17	69032600	69049357	ABCA9|ENST00000461623.1	-	69032600,69035245,69035659,69043488,69044496,69045171,69049282	69033873,69035431,69035801,69043715,69044600,69045336,69049357	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	32953978	32954021	32953978	+	RAMPAGE_only	2	2	12	0.372332	3.418296	chr11	32953932	32953995	LINE|CR1|L3	-	chr11	32934583	32975630	QSER1|ENST00000524678.1	+	32934583,32953856,32955295,32955987,32957868,32966299,32969045,32973396,32975247	32935435,32954179,32955412,32956121,32958086,32966437,32969143,32973549,32975630	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	6693313	6693343	6693342	-	High_confidence	4	4	10	0.310276	3.169925	chr4	6692812	6693375	LTR|ERV1|MER39B	+	chr4	6691994	6692970	AC093323.2|ENST00000632154.1	-	6691994	6692970	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	74254198	74254350	74254198	-	RAMPAGE_only	9	14	146	4.530036	5.100522	chrX	74254189	74254325	LTR|ERV1|HUERS-P3b-int	+	chrX	74209975	74292529	MSTRG.24205.12	-	74209975,74218620,74240617,74243129,74280930,74281701,74292168	74218577,74240557,74242520,74280494,74281085,74281848,74292529	0.958904
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	151958581	151958582	151958581	-	RAMPAGE_only	49	49	51	1.582410	4.348223	chrX	151958580	151958655	DNA|DNA|MER135	-	chrX	151953124	151959723	GABRE|ENST00000486255.1	-	151953124,151955367,151955707	151955084,151955567,151959723	0.960784
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	70338798	70338811	70338810	+	High_confidence	3	4	7	0.217194	2.584963	chr12	70338859	70339014	LINE|L2|L2a	+	chr12	70338473	70353938	CNOT2|ENST00000546673.5	+	70338473,70338665,70342106,70342257,70344127,70346179,70353828	70338563,70338822,70342168,70342307,70344239,70346324,70353938	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	126039295	126039305	126039295	-	RAMPAGE_only	5	5	10	0.310276	3.121928	chr10	126038952	126039246	SINE|Alu|AluYc	-	chr10	126012380	126388455	ADAM12|ENST00000368679.8	-	126012380,126019694,126036145,126038240,126039293,126043039,126046054,126049252,126049560,126064805,126066716,126071476,126093984,126098415,126101071,126108592,126109774,126118037,126135583,126155217,126278914,126330411,126388057	126017339,126019825,126036325,126038349,126039429,126043148,126046132,126049451,126049669,126065001,126066806,126071654,126094133,126098500,126101241,126108664,126109840,126118224,126135660,126155305,126278988,126330509,126388455	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	35115816	35115851	35115816	+	High_confidence	6	6	29	0.899802	4.351823	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115827	35124324	FXYD3|NM_001136007.1	+	35115827,35116263,35117256,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35115959,35116359,35117378,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35124324	0.586207
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	121842958	121842982	121842981	-	RAMPAGE_only	5	5	15	0.465415	3.664498	chr10	121842495	121844102	LINE|L1|L1MC3	+	chr10	121743194	121927938	ATE1|ENST00000423243.5	-	121743194,121790168,121836717,121841081,121870005,121899865,121902390,121910905,121913789,121922348,121924265,121927843	121743858,121790289,121836817,121841263,121870038,121899994,121902620,121911151,121913893,121922411,121924329,121927938	0.933333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	50756741	50756827	50756741	-	RAMPAGE_only	5	5	47	1.458299	4.805746	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.851064
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	52427348	52427358	52427348	-	RAMPAGE_only	3	4	7	0.217194	2.807355	chr13	52427324	52427622	SINE|Alu|AluY	+	chr13	52412601	52450244	VPS36|ENST00000611132.4	-	52412601,52416016,52417056,52417991,52423573,52425931,52426988,52427186,52433661,52434792,52436289,52439097,52442376,52449930	52415923,52416093,52417141,52418056,52423639,52426066,52427066,52427219,52433748,52434882,52436404,52439168,52442445,52450244	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	58424046	58424076	58424075	-	RAMPAGE_only	3	3	16	0.496442	3.750000	chr14	58423952	58424081	LINE|CR1|L3	-	chr14	58408663	58427114	TIMM9|ENST00000556007.6	-	58408663,58410842,58411906,58424007,58427053	58409099,58410938,58411971,58424095,58427114	0.812500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	32446714	32446718	32446714	+	RAMPAGE_only	3	3	8	0.248221	2.750000	chr12	32446424	32446718	LTR|ERV1|MER39	-	chr12	32485971	32646050	FGD4|NM_001304481.1	+	32485971,32564136,32576265,32581959,32598496,32601277,32602160,32607956,32610775,32611136,32619697,32624421,32624975,32625653,32633548,32638654,32640275	32486143,32564289,32576449,32582467,32598586,32601423,32602317,32608095,32610834,32611283,32619870,32624452,32625068,32625779,32633689,32638795,32646050	0.625000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	46280201	46280255	46280201	-	RAMPAGE_only	2	2	11	0.341304	2.646439	chr1	46280045	46280180	SINE|MIR|MIRb	-	chr1	46278400	46286112	LRRC41|ENST00000617760.4	-	46278400,46278906,46279181,46279491,46280191,46280395,46281124,46285361	46278905,46279084,46279257,46279614,46280290,46280560,46281385,46286112	0.727273
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	52579438	52579439	52579438	+	RAMPAGE_only	8	8	8	0.248221	3.000000	chr6	52579191	52579722	LTR|ERVL-MaLR|MLT1F1	+	chr6	52578365	52583559	TRAM2-AS1|ENST00000605910.1	+	52578365,52578501,52579374,52582862	52578393,52578594,52579609,52583559	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	36602740	36602759	36602758	+	RAMPAGE_only	4	4	8	0.248221	2.500000	chr18	36602780	36603226	LTR|ERVL-MaLR|MLT1C	+	chr18	36594785	36780055	FHOD3|ENST00000592930.5	+	36594785,36602673,36611951,36625510,36681435,36687127,36693208,36709094,36717831,36730645,36740655,36742736,36744031,36746944,36755118,36760607,36769264,36779447	36594898,36602768,36612095,36625749,36681570,36687178,36693423,36709391,36718715,36730804,36740838,36742856,36744193,36747135,36755311,36760782,36769426,36780055	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	52548793	52548829	52548828	-	RAMPAGE_only	13	13	38	1.179051	3.875849	chr15	52548772	52548988	DNA|TcMar-Tigger|MamRep434	-	chr15	52547044	52569132	ARPP19|NM_001306196.1	-	52547044,52557099,52564189,52568847	52552104,52557222,52564246,52569132	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	51599923	51600012	51599923	-	High_confidence	44	44	288	8.935962	6.083382	chr14	51599913	51599958	SINE|MIR|MIR3	+	chr14	51546628	51599920	FRMD6-AS2|ENST00000557625.1	-	51546628,51547706,51584165,51599826	51546820,51547883,51584283,51599920	0.694444
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	129256136	129256146	129256145	+	RAMPAGE_only	6	7	10	0.310276	2.921928	chr3	129256170	129256401	DNA|hAT|MamRep38	+	chr3	129260226	129265675	COPG1|ENST00000504547.1	+	129260226,129260618,129263903,129265548	129260400,129260807,129263999,129265675	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	8788252	8788253	8788252	+	High_confidence	9	9	9	0.279249	2.947703	chr12	8787082	8788668	LTR|ERV1|LTR12C	+	chr12	8788256	8794497	AC092490.1|ENST00000422780.3	+	8788256,8794304	8788786,8794497	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	196715644	196715669	196715651	+	RAMPAGE_only	6	7	23	0.713636	3.975418	chr1	196715611	196715668	LINE|CR1|X7C_LINE	+	chr1	196676987	196747504	CFH|ENST00000466229.5	+	196676987,196685063,196689419,196690062,196713734,196715592,196725120,196726469,196726760,196728345,196736823,196737474,196740618,196743451,196745816,196747110	196679793,196685237,196689614,196690239,196713917,196715769,196725297,196726652,196726940,196728522,196737006,196737660,196742051,196743628,196745999,196747504	0.913043
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	107719695	107719696	107719695	-	High_confidence	14	14	18	0.558498	3.308271	chr11	107719646	107719884	LTR|Gypsy?|LTR88c	+	chr11	107707377	107719693	SLN|ENST00000531293.1	-	107707377,107711962,107719615	107708005,107712162,107719693	0.944444
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100914800	100914851	100914850	+	RAMPAGE_only	8	8	24	0.744664	3.886842	chr14	100914604	100915346	LTR|ERVL|MER54A	+	chr14	100906043	100947076	MSTRG.7387.63	+	100906043,100906935,100931913,100938879,100940364,100942761,100944808,100947033	100906163,100931545,100937488,100938956,100940450,100942838,100944925,100947076	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	21200804	21200844	21200825	+	High_confidence	17	17	43	1.334189	4.897081	chr6	21200835	21201081	LINE|L1|L1MC3	+	chr6	21200811	21231441	CDKAL1|ENST00000476517.1	+	21200811,21201109,21230847	21200892,21201274,21231441	0.953488
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	133369945	133369964	133369958	-	RAMPAGE_only	3	3	9	0.279249	2.947703	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	113649770	113649819	113649770	-	High_confidence	9	9	51	1.582410	4.083493	chr6	113649538	113649782	SINE|MIR|MIRc	-	chr6	113616926	113650090	LINC02541|ENST00000649523.1	-	113616926,113622880,113623170,113623739,113627520,113649403,113650014	113617423,113623054,113623646,113623822,113627675,113649821,113650090	0.941176
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	155478002	155478062	155478061	-	RAMPAGE_only	5	7	27	0.837746	4.254525	chr1	155478036	155478157	LINE|CR1|X6B_LINE	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.814815
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	13419689	13419731	13419689	-	RAMPAGE_only	3	3	14	0.434387	3.521641	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.928571
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	65382645	65382660	65382645	-	High_confidence	10	10	21	0.651581	3.826875	chr11	65382620	65383056	LINE|L2|L2b	+	chr11	65375193	65382646	SLC25A45|ENST00000531791.1	-	65375193,65376817,65380131	65376675,65379938,65382646	0.904762
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	92799184	92799208	92799184	-	RAMPAGE_only	5	6	15	0.465415	3.139572	chr12	92799177	92799303	LINE|L2|L2a	-	chr12	92770636	92929331	EEA1|ENST00000322349.12	-	92770636,92776843,92777542,92777940,92779114,92780279,92781949,92787866,92798891,92801599,92802403,92809016,92811278,92812979,92816199,92819307,92826165,92827911,92832511,92842464,92851110,92852174,92852911,92853914,92857274,92857430,92864859,92891628,92929042	92776133,92776942,92777663,92778179,92779300,92780411,92782135,92788049,92799086,92801701,92802734,92809156,92811434,92813093,92816400,92819511,92826285,92828061,92832850,92842581,92851266,92852296,92853025,92853954,92857340,92857485,92864987,92891721,92929331	0.933333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	113625940	113625941	113625940	+	High_confidence	6	6	8	0.248221	2.521641	chr3	113625438	113625948	LINE|L1|L1MA3	-	chr3	113625913	113627920	SIDT1|ENST00000498152.1	+	113625913,113627645	113626215,113627920	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	59619894	59619929	59619894	+	High_confidence	996	1139	3933	122.031736	5.855750	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.951945
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	851139	851140	851139	-	High_confidence	10	10	10	0.310276	2.721928	chr4	851102	851393	SINE|Alu|AluJb	-	chr4	849275	851673	GAK|ENST00000502799.1	-	849275,849891	849774,851673	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	89888918	89888930	89888929	+	RAMPAGE_only	20	22	30	0.930829	3.814372	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	142272800	142272816	142272815	-	High_confidence	5	7	22	0.682608	4.277613	chr7	142272526	142273083	LTR|ERV1|MER92C	+	chr7	142268283	142272249	TRY2P|NR_036483.2	-	142268283,142271147,142271952	142269885,142271301,142272249	0.818182
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	68906939	68906957	68906942	-	High_confidence	15	15	42	1.303161	4.733949	chr4	68905745	68907106	LTR|ERV1|HERV3-int	-	chr4	68901007	68906983	AC021146.12|ENST00000608365.1	-	68901007,68906874	68901375,68906983	0.619048
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	53811934	53811942	53811941	-	High_confidence	6	6	12	0.372332	2.663533	chr7	53811596	53812122	LTR|ERVL|MLT2B3	-	chr7	53655508	53811931	LINC01446|NR_038371.1	-	53655508,53691926,53765126,53765482,53779945,53811507	53657448,53692089,53765245,53766227,53780038,53811931	0.916667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	30863413	30863434	30863413	+	RAMPAGE_only	4	5	12	0.372332	3.459432	chr13	30863143	30863642	LTR|ERVL|MER74A	+	chr13	30906174	30925572	MEDAG|NM_032849.3	+	30906174,30917402,30921013,30921560,30924310	30906793,30917512,30921126,30921846,30925572	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	132782334	132782401	132782334	-	RAMPAGE_only	2	2	19	0.589525	3.681881	chr12	132782294	132782361	SINE|5S-Deu-L2|AmnSINE1	+	chr12	132768914	132822311	GOLGA3|ENST00000450791.6	-	132768914,132774156,132775140,132776633,132776957,132777665,132780797,132782295,132784163,132786338,132786692,132789026,132791215,132795851,132796538,132798339,132801766,132804715,132807176,132807890,132813306,132816539,132821995	132773294,132774320,132775305,132776756,132777090,132777805,132780914,132782493,132784307,132786555,132786787,132789290,132791293,132796220,132796700,132798477,132801969,132805022,132807288,132808549,132813419,132816812,132822311	0.947368
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	33945809	33945810	33945809	-	RAMPAGE_only	37	37	37	1.148023	3.779890	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	41871802	41871814	41871802	-	RAMPAGE_only	2	2	11	0.341304	2.921928	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.909091
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	108223516	108223554	108223516	+	High_confidence	5	7	17	0.527470	3.577820	chr11	108223533	108223589	SINE|MIR|MIR	+	chr11	108223102	108236534	ATM|ENST00000530958.5	+	108223102,108227775,108229177,108235669	108227696,108227888,108229323,108236534	0.941176
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	173369507	173369534	173369533	-	High_confidence	5	5	10	0.310276	2.721928	chr4	173369469	173369631	SINE|Alu|AluSx	+	chr4	173363779	173370446	AC097534.2|ENST00000609153.1	-	173363779,173369433,173370291	173364198,173369610,173370446	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	20423688	20423704	20423703	-	RAMPAGE_only	31	39	75	2.327074	4.800821	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	87499826	87499827	87499826	-	RAMPAGE_only	4	4	7	0.217194	2.584963	chr4	87499693	87499843	LINE|RTE-BovB|MamRTE1	-	chr4	87473417	87529092	SPARCL1|ENST00000503414.5	-	87473417,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87497130,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87497239,87499585,87529092	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	169812887	169812904	169812903	-	High_confidence	6	6	10	0.310276	2.921928	chr3	169812780	169813001	LINE|L2|L2b	-	chr3	169793472	169812932	LRRC34|ENST00000522830.5	-	169793472,169795484,169796213,169796744,169800658,169804052,169806847,169807425,169807587,169808627,169812569	169793838,169795611,169796369,169796899,169800754,169804181,169806931,169807490,169807709,169808745,169812932	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	58267062	58267091	58267062	-	RAMPAGE_only	3	3	17	0.527470	3.625000	chr14	58266998	58267301	SINE|Alu|AluSx	-	chr14	58266607	58298102	PSMA3-AS1|ENST00000556002.5	-	58266607,58273978,58291634,58297954	58267393,58274010,58291707,58298102	0.705882
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	102261231	102261241	102261240	-	High_confidence	2	2	7	0.217194	2.584963	chr8	102261109	102261291	DNA|hAT-Ac|OldhAT1	+	chr8	102253945	102261986	UBR5|ENST00000517465.1	-	102253945,102257631,102258315,102258984,102261145,102261914	102254514,102257717,102258424,102259129,102261259,102261986	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	62897430	62897435	62897430	+	High_confidence	5	5	13	0.403359	3.418296	chr9	62897231	62897457	LTR|ERV1|MER90	+	chr9	62897448	62900104	AL512625.1|ENST00000305709.5	+	62897448,62897849	62897734,62900104	0.615385
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	45594315	45594368	45594315	-	High_confidence	6	7	20	0.620553	3.932138	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45454592	45594491	MSTRG.2628.2	-	45454592,45459119,45461230,45464238,45489366,45533109,45553111,45594234	45458543,45459267,45461411,45464327,45489417,45533289,45553204,45594491	0.650000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	122164577	122164597	122164595	+	RAMPAGE_only	232	345	678	21.036745	6.667549	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122166767	122200083	MORN5|ENST00000486801.1	+	122166767,122174495,122199884	122166915,122174627,122200083	0.924779
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100934259	100934297	100934259	+	RAMPAGE_only	9	9	21	0.651581	3.787144	chr14	100934026	100934356	LINE|L1|L1MC1	-	chr14	100931878	100998541	MSTRG.7387.73	+	100931878,100937402,100938879,100940364,100942761,100944808,100947033,100948977,100949514,100950401,100951431,100953963,100954921,100955884,100958261,100960060,100961026,100963964,100964352,100966644,100967638,100968647,100969458,100972261,100974125,100975410,100980576,100982503,100983460,100984347,100985654,100986618,100988708,100989693,100991490,100993834,100996885,100997486	100935881,100937488,100938956,100940450,100942838,100944872,100947116,100949039,100949596,100950472,100951494,100954046,100955006,100955949,100958343,100960219,100961132,100964000,100964439,100966731,100967786,100968724,100969545,100972346,100974203,100975496,100980663,100982585,100983542,100984434,100985740,100987630,100988790,100989780,100991565,100993907,100996916,100998541	0.904762
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	123390725	123390761	123390725	+	High_confidence	14	14	33	1.023912	4.324849	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.878788
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	218287266	218287306	218287279	-	High_confidence	40	41	115	3.568179	5.166624	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	81170412	81170431	81170412	-	High_confidence	18	26	87	2.699405	5.284627	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.931034
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	54630785	54630792	54630785	+	RAMPAGE_only	4	4	8	0.248221	2.521641	chr1	54630775	54633691	LTR|ERVK|HERVK9-int	+	chr1	54548227	54639192	ACOT11|ENST00000371316.3	+	54548227,54584654,54585834,54592545,54593940,54594555,54597258,54599295,54601268,54602668,54603870,54604345,54605075,54607133,54607941,54630733,54634687	54548342,54584862,54585904,54592606,54594039,54594691,54597415,54599415,54601413,54602724,54603937,54604429,54605209,54607265,54608068,54630886,54639192	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	6918647	6918680	6918679	-	High_confidence	4	4	10	0.310276	2.721928	chr2	6918494	6918790	SINE|Alu|AluYd8	+	chr2	6914551	6918682	RNF144A-AS1|ENST00000424351.1	-	6914551,6918401	6917224,6918682	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	6493731	6493744	6493731	-	High_confidence	3	3	10	0.310276	2.846439	chr12	6493550	6493702	SINE|MIR|MIRb	-	chr12	6492151	6493718	MRPL51|ENST00000543959.5	-	6492151,6492861,6493673	6492467,6492972,6493718	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	123949796	123949850	123949824	-	High_confidence	3	3	12	0.372332	3.251629	chr3	123949742	123950001	LINE|L2|L2c	+	chr3	123947195	123949575	CCDC14|ENST00000434954.1	-	123947195,123948690,123948895,123949464	123947319,123948785,123949132,123949575	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	68512754	68512755	68512754	+	RAMPAGE_only	4	4	6	0.186166	2.584963	chr15	68512567	68513033	LTR|ERVL-MaLR|MLT1D	+	chr15	68518372	68727806	CORO2B|NM_001324014.1	+	68518372,68535594,68645159,68695139,68710731,68711541,68713924,68714558,68715214,68718697,68719143,68719412,68725842	68518593,68535659,68645360,68695256,68710881,68711706,68714041,68714663,68715311,68718810,68719234,68719552,68727806	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	35713204	35713268	35713240	-	High_confidence	2	2	13	0.403359	3.546594	chr20	35713201	35713317	SINE|Alu|AluJb	+	chr20	35704325	35713203	RBM39|ENST00000495293.5	-	35704325,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709274,35713203	0.615385
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	44828859	44828860	44828859	-	RAMPAGE_only	6	6	7	0.217194	2.584963	chr7	44828696	44829092	LTR|ERVL-MaLR|MLT1D	-	chr7	44826790	44848077	H2AFV|ENST00000222690.10	-	44826790,44835528,44840898,44843276,44847968	44830163,44835658,44841012,44843354,44848077	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	17282810	17282825	17282821	+	RAMPAGE_only	7	7	27	0.837746	3.902175	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.962963
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	19487898	19487911	19487898	-	High_confidence	13	14	38	1.179051	4.441714	chr16	19487758	19488251	LTR|ERVL|MER74A	-	chr16	19476915	19487899	AC130456.3|ENST00000561762.1	-	19476915,19486928,19487823	19477080,19487320,19487899	0.789474
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	23612744	23612767	23612762	+	RAMPAGE_only	3	3	13	0.403359	2.855389	chr14	23612270	23612982	LINE|L2|L2a	-	chr14	23619200	23620012	AL135999.3|ENST00000610501.1	+	23619200	23620012	0.615385
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	153119400	153119416	153119400	-	RAMPAGE_only	3	3	7	0.217194	2.521641	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112113	153113515	SPRR2F|ENST00000468739.1	-	153112113,153113473	153112752,153113515	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	185620092	185620118	185620092	-	RAMPAGE_only	4	5	12	0.372332	2.732159	chr4	185620090	185620157	LINE|RTE-BovB|MamRTE1	-	chr4	185614625	185615222	SORBS2|ENST00000480146.1	-	185614625,185615044	185614959,185615222	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	58857466	58857475	58857468	+	RAMPAGE_only	3	5	10	0.310276	2.725481	chr15	58857267	58857555	SINE|Alu|AluSx1	+	chr15	58771361	58861900	FAM63B|NM_001040453.2	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58861900	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	61918702	61918709	61918702	-	High_confidence	3	3	8	0.248221	2.807355	chr16	61918303	61919817	LINE|L1|L1HS	+	chr16	61901391	61918714	CDH8|ENST00000577228.1	-	61901391,61918257	61901473,61918714	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	14653390	14653391	14653390	-	High_confidence	42	43	43	1.334189	3.469201	chr5	14653390	14653484	DNA|hAT-Charlie|Charlie2b	-	chr5	14651940	14653329	EEF1A1P13|ENST00000503537.1	-	14651940	14653329	0.953488
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	33021416	33021417	33021416	-	RAMPAGE_only	8	9	10	0.310276	2.503258	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	238486008	238486043	238486042	-	High_confidence	4	4	22	0.682608	4.061482	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238476541	238486044	LINC01139|ENST00000649127.1	-	238476541,238481156,238485784	238476817,238481681,238486044	0.954545
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	21875639	21875718	21875639	-	High_confidence	23	30	166	5.150589	5.809729	chr1	21875470	21875616	SINE|MIR|MIRb	-	chr1	21874477	21875208	HSPG2|ENST00000498495.1	-	21874477,21874615,21874890	21874533,21874729,21875208	0.759036
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	39800293	39800314	39800293	-	High_confidence	24	24	127	3.940511	6.163760	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.590551
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	9818583	9818644	9818610	+	High_confidence	3	3	25	0.775691	4.251629	chr3	9818371	9818667	SINE|Alu|AluY	-	chr3	9818560	9835404	TTLL3|ENST00000473661.5	+	9818560,9825799,9826996,9827214,9828959,9833103,9834426,9834680	9820741,9825948,9827072,9827240,9829395,9833245,9834503,9835404	0.960000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	152347679	152347680	152347679	-	RAMPAGE_only	23	23	23	0.713636	3.344457	chr5	152347584	152347683	DNA|TcMar-Mariner|MADE1	+	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	4355592	4355593	4355592	-	High_confidence	117	119	119	3.692290	5.210461	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.899160
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	93431427	93431449	93431448	-	RAMPAGE_only	5	5	16	0.496442	3.577820	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	90467553	90467554	90467553	+	RAMPAGE_only	4	4	7	0.217194	2.584963	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90388260	90500371	IQGAP1|ENST00000560738.1	+	90388260,90390773,90466046,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390824,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500371	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	2726956	2726963	2726958	+	High_confidence	15	27	51	1.582410	4.821468	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.568627
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	125497340	125497355	125497340	-	RAMPAGE_only	3	3	8	0.248221	2.500000	chr3	125497243	125497317	LINE|L2|L2b	-	chr3	125447710	125520181	SNX4|ENST00000471751.5	-	125447710,125451304,125453809,125457265,125460770,125469453,125476694,125480246,125489407,125497340,125497833,125498058,125520031	125447826,125451419,125453955,125457365,125460860,125469519,125476756,125480319,125489463,125497388,125497983,125498194,125520181	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	111643076	111643087	111643076	+	RAMPAGE_only	2	2	9	0.279249	2.750000	chr9	111642927	111643241	DNA?|DNA?|UCON74	+	chr9	111631359	111654345	DNAJC25|ENST00000463589.5	+	111631359,111642838,111647044,111649452,111653099	111631743,111643094,111647259,111649923,111654345	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	145480764	145480772	145480771	+	RAMPAGE_only	6	11	18	0.558498	3.969816	chr4	145480763	145480842	LINE|L2|L2a	-	chr4	145481791	145558079	SMAD1|ENST00000302085.8	+	145481791,145514437,145539803,145542581,145546702,145553783,145557790	145482038,145515013,145540061,145542698,145546924,145554040,145558079	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	52805323	52805338	52805334	+	RAMPAGE_only	3	3	10	0.310276	2.947703	chr5	52805122	52805581	LINE|L2|L2	-	chr5	52787952	52834558	MSTRG.18540.4	+	52787952,52801408	52801120,52834558	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	3795740	3795789	3795750	+	High_confidence	50	54	268	8.315409	6.090551	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.996269
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	35713449	35713471	35713458	-	High_confidence	4	5	13	0.403359	3.251629	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.923077
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	8376198	8376200	8376198	+	RAMPAGE_only	3	6	7	0.217194	2.521641	chr18	8376241	8376395	LINE|L1|L1MB5	+	chr18	8370932	8379313	PTPRM|ENST00000583153.2	+	8370932,8371759,8376045,8376461,8378264,8379166	8371006,8371810,8376200,8376597,8378414,8379313	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	45353603	45353607	45353603	+	RAMPAGE_only	27	28	68	2.109880	4.676247	chrX	45353416	45353872	LTR|ERVL-MaLR|MLT1C	+	chrX	45505387	45527239	LINC01204|NR_104644.1	+	45505387,45510496,45521607,45524733	45505465,45510595,45521848,45527239	0.558824
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	83179178	83179179	83179178	+	RAMPAGE_only	14	14	14	0.434387	3.378783	chr15	83178896	83179386	LTR|ERVL|LTR53	+	chr15	83180801	83184796	AC103876.1|ENST00000561498.1	+	83180801,83184647	83181021,83184796	0.642857
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	1655395	1655445	1655409	-	RAMPAGE_only	15	23	48	1.489327	5.293296	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.562500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	38612582	38612626	38612597	+	RAMPAGE_only	6	6	25	0.775691	4.083856	chrX	38612500	38614189	LINE|L1|HAL1	-	chrX	38570682	38675816	TSPAN7|ENST00000488893.5	+	38570682,38666120,38671375,38674220,38675704	38570946,38666309,38671450,38674316,38675816	0.840000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	43137637	43137660	43137659	-	RAMPAGE_only	6	6	10	0.310276	2.947703	chr2	43137289	43137984	LINE|L2|L2a	+	chr2	43097745	43102691	LINC02580|ENST00000434020.1	-	43097745,43102034	43098040,43102691	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	53383540	53383551	53383540	+	RAMPAGE_only	2	2	7	0.217194	2.521641	chr4	53383379	53383686	SINE|Alu|AluSx1	+	chr4	53378217	53389849	FIP1L1|ENST00000510668.1	+	53378217,53379072,53379224,53382277,53383772,53389808	53378528,53379117,53379264,53382335,53383876,53389849	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	174238875	174238910	174238894	+	RAMPAGE_only	3	4	15	0.465415	3.235926	chr1	174233266	174239293	LINE|L1|L1PA2	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	57274833	57274843	57274833	+	RAMPAGE_only	6	6	14	0.434387	3.039149	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.642857
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	46274411	46274427	46274422	-	High_confidence	9	9	26	0.806719	3.970176	chr11	46274366	46274400	SINE|MIR|MIR1_Amn	-	chr11	46256354	46274547	LINC02489|ENST00000527239.1	-	46256354,46274380	46256541,46274547	0.615385
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	29280838	29280877	29280876	-	High_confidence	7	7	39	1.210078	4.912273	chr3	29280826	29280870	LINE|RTE-BovB|MamRTE1	-	chr3	29264193	29280904	RBMS3-AS3|ENST00000635847.1	-	29264193,29280730	29264757,29280904	0.564103
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	103129650	103129677	103129650	+	High_confidence	4	4	17	0.527470	3.750000	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	0.882353
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	39310263	39310340	39310282	+	RAMPAGE_only	6	6	65	2.016797	5.304229	chr1	39310272	39310313	LINE|L2|L2	-	chr1	39300313	39486987	MACF1|ENST00000372925.6	+	39300313,39302923,39309569,39310244,39310830,39315512,39316390,39317213,39318452,39319663,39322607,39322909,39324192,39324645,39327217,39349477,39350784,39353006,39357374,39358696,39359140,39360792,39361359,39368147,39370029,39372478,39379202,39380243,39381952,39385433,39387186,39422373,39422729,39424027,39427454,39429241,39429826,39430701,39432534,39433047,39434413,39435557,39436481,39437776,39439273,39441002,39441223,39441951,39442146,39442411,39442713,39443445,39444661,39447431,39447691,39448032,39448593,39451051,39452155,39452683,39453706,39454908,39458369,39459085,39460631,39461882,39463611,39468614,39479797,39484600,39485537	39300362,39303078,39309696,39310428,39311000,39315691,39316529,39317407,39318615,39319747,39322715,39323008,39324345,39324734,39327353,39349627,39351018,39353231,39357893,39358873,39359264,39361001,39361677,39368314,39370186,39372596,39379444,39380373,39382152,39385929,39388658,39422535,39422900,39424194,39427614,39429326,39430068,39430908,39432654,39433155,39434632,39435761,39436490,39438008,39439500,39441125,39441325,39442053,39442320,39442567,39442911,39443574,39444835,39447587,39447898,39448152,39448763,39451211,39452350,39452812,39453850,39455097,39458490,39459249,39460794,39462037,39463686,39468732,39480009,39484730,39486987	0.907692
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	110642789	110642790	110642789	-	High_confidence	24	24	24	0.744664	3.886842	chr2	110642693	110642986	SINE|Alu|AluJr	-	chr2	110641325	110642790	BUB1|ENST00000478175.1	-	110641325,110641641,110642118,110642448	110641464,110641803,110642234,110642790	0.916667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	12927708	12927756	12927733	+	High_confidence	28	29	65	2.016797	5.691566	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.676923
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	19386333	19386460	19386333	-	High_confidence	13	18	108	3.350986	5.720178	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	0.990741
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	81427421	81427462	81427461	-	High_confidence	9	9	59	1.830631	4.291553	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.915254
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	110179301	110179398	110179306	-	RAMPAGE_only	19	19	216	6.701972	6.020491	chr13	110179161	110179256	LINE|L2|L2c	-	chr13	110148957	110307157	COL4A1|NM_001845.5	-	110148957,110152333,110155282,110161191,110162229,110163462,110164861,110166231,110167157,110169628,110170546,110172719,110173899,110174445,110174622,110175217,110176423,110176625,110176884,110177841,110178063,110178922,110179270,110181291,110182992,110183183,110186384,110187137,110192213,110192829,110195022,110198466,110200853,110201437,110203565,110205352,110205493,110206664,110206864,110207402,110208848,110209391,110209979,110210128,110211646,110211868,110212416,110212573,110213781,110213925,110242674,110306943	110150444,110152506,110155397,110161369,110162442,110163561,110164990,110166303,110167230,110169762,110170732,110172770,110173998,110174526,110174749,110175357,110176513,110176724,110177037,110177931,110178231,110179036,110179421,110181389,110183097,110183276,110186553,110187329,110192284,110192913,110195118,110198631,110200889,110201522,110203607,110205406,110205538,110206715,110206891,110207489,110208890,110209427,110210042,110210212,110211673,110211922,110212479,110212618,110213826,110214015,110242734,110307157	0.986111
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	81450042	81450082	81450042	-	High_confidence	2	2	8	0.248221	2.500000	chr14	81449853	81450021	DNA|hAT-Charlie|MER5B	-	chr14	81441986	81450157	LOC100506700|NR_109999.1	-	81441986,81442284,81449888	81442196,81442442,81450157	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	93339459	93339500	93339459	-	RAMPAGE_only	2	2	10	0.310276	3.169925	chr1	93339447	93339491	LTR|ERVL-MaLR|MLT1O	+	chr1	93338928	93345783	CCDC18-AS1|ENST00000449305.5	-	93338928,93339356,93339648,93340457,93345645	93339274,93339536,93339679,93340510,93345783	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	19361450	19361451	19361450	+	RAMPAGE_only	6	7	7	0.217194	2.584963	chr12	19361173	19361482	SINE|Alu|AluY	-	chr12	19322517	19376397	PLEKHA5|ENST00000538972.1	+	19322517,19336514,19343322,19353883,19358227,19359411,19361581,19365963,19369692,19375530	19322667,19336616,19343434,19354002,19358437,19359546,19361706,19366109,19369798,19376397	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100913264	100913435	100913304	+	RAMPAGE_only	8	8	104	3.226875	4.668493	chr14	100913266	100913386	LINE|L1|L1ME5	+	chr14	100906043	100947076	MSTRG.7387.63	+	100906043,100906935,100931913,100938879,100940364,100942761,100944808,100947033	100906163,100931545,100937488,100938956,100940450,100942838,100944925,100947076	0.961538
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	53484460	53484479	53484460	-	RAMPAGE_only	4	4	9	0.279249	2.947703	chr12	53484434	53484529	DNA|hAT-Charlie|MER103C	-	chr12	53480489	53486728	MAP3K12|ENST00000547020.1	-	53480489,53482298,53483910,53484256,53485316	53482211,53483723,53484020,53485214,53486728	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	58851957	58851958	58851957	+	RAMPAGE_only	11	11	13	0.403359	3.392747	chr15	58852004	58852305	SINE|Alu|AluSx1	+	chr15	58771361	58857533	MINDY2|ENST00000450403.3	+	58771361,58787905,58802312,58810229,58821716,58831773,58847296,58851770,58854484	58772235,58787963,58802377,58810388,58821819,58831916,58847470,58851965,58857533	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	159374804	159374812	159374811	-	RAMPAGE_only	3	3	7	0.217194	2.521641	chr2	159374797	159374844	LINE|L2|L2a	-	chr2	159318978	159400650	MSTRG.13863.1	-	159318978,159325652,159332539,159337461,159347485,159348677,159349006,159349707,159373044,159374690,159382558,159383605,159385154,159389344,159395768	159324954,159325918,159337077,159337772,159347646,159348833,159349280,159350357,159373189,159374753,159382802,159383680,159386607,159389485,159400650	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	111097310	111097352	111097343	-	High_confidence	27	32	212	6.577861	5.417335	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.976415
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	20775862	20775936	20775935	-	RAMPAGE_only	4	4	28	0.868774	4.137538	chr1	20775005	20775936	DNA|TcMar-Tigger|Tigger3b	+	chr1	20775449	20780541	HP1BP3|ENST00000487117.1	-	20775449,20779811,20780344	20776750,20779911,20780541	0.785714
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	28048446	28048447	28048446	+	High_confidence	195	206	233	7.229442	4.547102	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.961373
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	59148656	59148690	59148656	+	High_confidence	2	3	11	0.341304	3.277613	chr11	59148443	59148662	SINE|MIR|MIRb	+	chr11	59148244	59155036	FAM111A|ENST00000531147.1	+	59148244,59151749	59148953,59155036	0.909091
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	232816731	232816752	232816731	+	RAMPAGE_only	9	9	35	1.085968	4.786426	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.885714
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	42607606	42607607	42607606	-	RAMPAGE_only	19	26	26	0.806719	3.736441	chr21	42607449	42607803	LTR|ERVL|LTR47A	-	chr21	42599279	42615058	LINC01671|ENST00000419628.1	-	42599279,42614852	42600848,42615058	0.846154
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	86453318	86453342	86453324	-	High_confidence	5	5	26	0.806719	4.053509	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453325	MAPK10|ENST00000641313.1	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86354644,86453325	0.846154
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	37465449	37465463	37465449	-	RAMPAGE_only	2	2	6	0.186166	2.584963	chr19	37464765	37465454	LINE|L2|L2a	+	chr19	37411154	37467229	ZNF569|ENST00000392149.6	-	37411154,37425867,37426251,37444906,37467086	37414419,37425963,37426378,37444964,37467229	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	121841674	121841675	121841674	-	RAMPAGE_only	15	15	20	0.620553	4.037401	chr10	121841572	121841913	LINE|L1|L1PB1	+	chr10	121743194	121927938	ATE1|ENST00000423243.5	-	121743194,121790168,121836717,121841081,121870005,121899865,121902390,121910905,121913789,121922348,121924265,121927843	121743858,121790289,121836817,121841263,121870038,121899994,121902620,121911151,121913893,121922411,121924329,121927938	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	11547589	11547627	11547589	+	High_confidence	3	3	9	0.279249	2.500000	chr19	11547428	11547728	SINE|Alu|AluY	+	chr19	11547839	11550321	CNN1|ENST00000588935.1	+	11547839,11549322,11549549,11550032	11547907,11549469,11549745,11550321	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	124666339	124666375	124666374	-	RAMPAGE_only	5	5	17	0.527470	3.625000	chr4	124666201	124666435	SINE|tRNA-RTE|MamSINE1	+	chr4	124664051	124712722	MSTRG.17983.1	-	124664051,124668983,124678675,124709999	124667514,124672534,124678905,124712722	0.941176
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	43013462	43013477	43013462	-	High_confidence	3	3	10	0.310276	2.725481	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	154928503	154928515	154928503	+	High_confidence	27	28	48	1.489327	5.037782	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.895833
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	31090164	31090179	31090164	+	RAMPAGE_only	5	5	11	0.341304	3.277613	chr22	31090196	31090258	SINE|MIR|MIR1_Amn	+	chr22	31088101	31101783	SMTN|ENST00000460658.5	+	31088101,31088512,31088698,31088871,31089698,31090107,31090807,31090960,31091674,31095302,31096997,31097268,31098666,31099061,31100884	31088113,31088606,31088777,31088969,31090019,31090180,31090879,31091482,31091847,31096897,31097060,31097338,31098840,31099896,31101783	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	24742767	24742786	24742785	+	RAMPAGE_only	3	3	7	0.217194	2.584963	chr16	24742641	24742943	SINE|Alu|AluSx1	+	chr16	24730121	24824786	MSTRG.8893.5	+	24730121,24758338,24776932,24789231,24794543,24795906,24797489,24797914,24804176,24805013,24805604,24806205,24806573,24809349,24815146,24816815,24818592,24820138,24822076,24822873,24823431	24750813,24758360,24777358,24791817,24794719,24795939,24797570,24797966,24804319,24805151,24805733,24806283,24806784,24809481,24815305,24816956,24818700,24820360,24822147,24823013,24824786	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	29963560	29963568	29963560	+	High_confidence	5	5	11	0.341304	2.845351	chr16	29963600	29963902	SINE|Alu|AluSx1	+	chr16	29963415	29973047	TMEM219|ENST00000569481.1	+	29963415,29971407,29972949	29963589,29971578,29973047	0.545455
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	130079542	130079561	130079542	+	RAMPAGE_only	6	6	14	0.434387	3.026987	chr9	130079384	130079578	SINE|MIR|MIRb	+	chr9	130053924	130136123	GPR107|ENST00000610997.1	+	130053924,130075635,130076411,130077298,130079629,130083564,130086419,130090875,130092247,130099456,130100628,130101105,130104419,130107495,130110369,130114572,130124914,130127482,130128639,130135024	130054073,130075749,130076462,130077378,130079769,130083602,130086476,130090983,130092381,130099532,130100702,130101223,130104550,130107539,130110422,130114663,130124964,130127566,130128761,130136123	0.928571
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	60542152	60542168	60542152	-	RAMPAGE_only	2	3	8	0.248221	2.500000	chr5	60542102	60542353	LINE|L2|L2	+	chr5	59988360	60522120	PDE4D|ENST00000506510.6	-	59988360,60185556,60522050	59988717,60185687,60522120	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	56593718	56593761	56593760	+	RAMPAGE_only	4	4	10	0.310276	2.721928	chr12	56593540	56593846	SINE|Alu|AluSx1	-	chr12	56521928	56596196	RBMS2|ENST00000262031.9	+	56521928,56562416,56568974,56569898,56571697,56581183,56581398,56581832,56582058,56586848,56587553,56588293,56588931,56589139	56522089,56562583,56569033,56569990,56571855,56581263,56581508,56581879,56582152,56586926,56587664,56588374,56589018,56596196	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	134485387	134485490	134485443	-	High_confidence	33	36	223	6.919165	6.474030	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.946188
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	134200673	134200695	134200694	-	RAMPAGE_only	5	5	13	0.403359	3.392747	chr4	134200680	134200734	LINE|CR1|X7C_LINE	-	chr4	134196332	134201748	PABPC4L|NM_001114734.1	-	134196332,134201717	134201245,134201748	0.923077
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	39083039	39083066	39083065	+	RAMPAGE_only	5	6	16	0.496442	3.625000	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.687500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	11808229	11808255	11808254	+	High_confidence	3	4	7	0.217194	2.521641	chr8	11807810	11808255	LTR|ERV1|MER31B	-	chr8	11808416	11838967	FDFT1|ENST00000525954.5	+	11808416,11809666,11821749,11826023,11830243,11831517,11838387	11808891,11809850,11821878,11826215,11830420,11831670,11838967	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	203049933	203049965	203049964	+	RAMPAGE_only	3	3	6	0.186166	2.584963	chr2	203049999	203050247	LINE|L1|L1PA7	+	chr2	203014924	203062488	NBEAL1|ENST00000478884.5	+	203014924,203016155,203041764,203049813,203056426,203057325,203062278	203014982,203016435,203041856,203049975,203056508,203057453,203062488	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	89656045	89656058	89656045	-	RAMPAGE_only	4	4	14	0.434387	3.664498	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642498	89819723	MDN1|ENST00000369393.7	-	89642498,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89706058,89707360,89708495,89710680,89712035,89712574,89713147,89714542,89715652,89716649,89718365,89718766,89719135,89722954,89723511,89725198,89727832,89728930,89730725,89732556,89738325,89740233,89743149,89743575,89745272,89745491,89747328,89749222,89749542,89750353,89751430,89753511,89754082,89756276,89758254,89758815,89761644,89762318,89771560,89772572,89774620,89776599,89780211,89781398,89785011,89787853,89789779,89790158,89793761,89794099,89794576,89803327,89819505	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89706192,89707476,89708628,89710794,89712256,89712786,89713296,89714751,89715769,89716809,89718627,89719030,89719225,89723143,89723619,89725396,89727955,89729139,89730923,89732775,89738455,89740378,89743280,89743714,89745411,89745626,89747470,89749369,89749751,89750532,89751582,89753622,89754230,89756390,89758351,89758960,89761748,89762530,89771621,89772721,89774733,89776695,89780293,89781592,89785126,89787957,89789911,89790401,89793954,89794207,89794801,89803554,89819723	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	30576661	30576686	30576685	-	High_confidence	4	4	13	0.403359	3.251629	chr7	30576480	30576831	LTR|ERVL-MaLR|THE1B	-	chr7	30574422	30576742	GARS-DT|ENST00000584023.1	-	30574422,30576563	30574881,30576742	0.846154
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	8718523	8718535	8718534	-	High_confidence	5	5	9	0.279249	2.725481	chr11	8718453	8718544	LINE|L2|L2a	+	chr11	8693747	8718477	ST5|ENST00000526099.5	-	8693747,8695462,8696426,8697524,8698932,8699212,8702571,8707084,8707776,8710844,8711121,8712550,8713997,8714609,8715602,8717740,8718358	8694130,8695549,8696666,8697636,8698974,8699390,8702720,8707225,8707854,8710914,8711231,8712735,8714042,8714706,8715818,8717892,8718477	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	123060124	123060256	123060168	-	High_confidence	31	38	233	7.229442	5.526867	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	0.987124
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	77088090	77088111	77088110	+	High_confidence	3	5	10	0.310276	2.921928	chr5	77088060	77088691	LTR|ERV1|LTR1B	-	chr5	77088079	77118375	ZBED3-AS1|ENST00000514288.5	+	77088079,77098654,77105655,77118319	77088472,77098747,77105689,77118375	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	65285131	65285134	65285131	+	RAMPAGE_only	9	10	21	0.651581	3.997670	chr14	65284944	65285417	LTR|ERVL-MaLR|MLT1C	+	chr14	65410591	65744121	FUT8|ENST00000360689.9	+	65410591,65455620,65561336,65615977,65616210,65629491,65669242,65721774,65724146,65733230,65742092	65411993,65455718,65561766,65616093,65616373,65629606,65669480,65722021,65724323,65733381,65744121	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	100268167	100268281	100268280	+	RAMPAGE_only	9	9	58	1.799604	4.197248	chr1	100268316	100268395	SINE|MIR|MIRc	+	chr1	100266288	100292769	MSTRG.1127.5	+	100266288,100266523,100268136,100270556,100273393,100275598,100277257,100285227,100287098,100291402	100266420,100266624,100268295,100270680,100274965,100275723,100277316,100285322,100287203,100292769	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	53546444	53546445	53546444	-	RAMPAGE_only	7	7	11	0.341304	2.921928	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53543709	53548052	HUWE1|ENST00000474288.1	-	53543709,53544559,53545028,53546435,53546703,53547672	53543968,53544762,53545161,53546592,53546825,53548052	0.545455
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	143964791	143964812	143964791	-	High_confidence	11	12	25	0.775691	4.243856	chr6	143964544	143965292	LTR|Gypsy|MamGyp-int	+	chr6	143940337	143964868	PLAGL1|ENST00000367572.3	-	143940337,143960468,143964786	143942663,143960556,143964868	0.640000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	245860587	245860615	245860587	-	RAMPAGE_only	6	6	22	0.682608	3.936260	chr1	245860451	245860544	DNA|hAT-Tip100|UCON132b	-	chr1	245749350	245858647	SMYD3|ENST00000483072.5	-	245749350,245858495	245749664,245858647	0.818182
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	33021454	33021458	33021457	-	RAMPAGE_only	5	8	11	0.341304	2.732159	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	1721622	1721637	1721636	-	High_confidence	4	4	10	0.310276	2.921928	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	58312235	58312243	58312235	+	RAMPAGE_only	2	2	6	0.186166	2.584963	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	46733283	46733305	46733292	-	High_confidence	3	3	11	0.341304	2.721928	chr19	46733275	46733512	LINE|L1|L1MC	+	chr19	46727906	46733449	STRN4|ENST00000594847.6	-	46727906,46728617,46730731,46733038	46728007,46728777,46730873,46733449	0.818182
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	10553364	10553365	10553364	+	High_confidence	6	6	7	0.217194	2.584963	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	49371229	49371243	49371242	+	RAMPAGE_only	4	4	11	0.341304	3.121928	chr12	49371035	49371545	LINE|L1|L1MB3	-	chr12	49367517	49484663	SPATS2|ENST00000548777.5	+	49367517,49406472,49460769,49484589	49367587,49406565,49461037,49484663	0.636364
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	102235448	102235459	102235458	-	High_confidence	21	21	40	1.241106	4.455543	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	10589962	10589963	10589962	-	High_confidence	49	50	53	1.644465	5.147461	chrX	10589852	10590340	LTR|ERV1|LTR2B	-	chrX	10445555	10589909	MID1|ENST00000380780.5	-	10445555,10454869,10459645,10469696,10474622,10482479,10495583,10523091,10566887,10589586	10449716,10455077,10459807,10469840,10474750,10482628,10495691,10523187,10567603,10589909	0.641509
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	75248150	75248151	75248150	-	High_confidence	13	13	13	0.403359	3.180833	chr16	75248002	75248144	SINE|MIR|MIRb	-	chr16	75229452	75248240	BCAR1|ENST00000542031.6	-	75229452,75233845,75234888,75236881,75237182,75242469,75248053	75230023,75233935,75235986,75236998,75237344,75243090,75248240	0.846154
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	124355437	124355447	124355445	-	RAMPAGE_only	3	5	11	0.341304	3.095795	chr12	124355351	124355418	SINE|MIR|MIR3	-	chr12	124324415	124422554	NCOR2|ENST00000356219.7	-	124324415,124326190,124327408,124330844,124332318,124333129,124334423,124335134,124335482,124336752,124340005,124340293,124340601,124341822,124343004,124344596,124346563,124347824,124348173,124350586,124354092,124354477,124354836,124355431,124356641,124362125,124363678,124372021,124374412,124378236,124385744,124398118,124400500,124402403,124419956,124422500	124325583,124326370,124327633,124330898,124332467,124333279,124334617,124335280,124335632,124337180,124340204,124340443,124340751,124342074,124343226,124344951,124346850,124347911,124348314,124350737,124354196,124354582,124354939,124355571,124356806,124362297,124363799,124372610,124374463,124378384,124385887,124398181,124400673,124402561,124420055,124422554	0.909091
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	170226587	170226588	170226587	+	High_confidence	112	118	154	4.778258	6.407049	chr4	170226427	170226711	LTR|ERV1|LTR10B1	+	chr4	170226590	170283723	LINC01612|NR_125889.1	+	170226590,170276581,170282750	170226783,170276675,170283723	0.532468
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	997302	997319	997318	-	High_confidence	9	9	31	0.961857	3.922829	chr5	996794	997467	LTR|ERV1|MER72	+	chr5	987179	997308	AC116351.1|ENST00000399869.1	-	987179,997270	990623,997308	0.903226
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	105074422	105074423	105074422	+	RAMPAGE_only	5	5	7	0.217194	2.584963	chr7	105074131	105074480	LINE|L1|L1MC5a	-	chr7	105063349	105101478	KMT2E|ENST00000622386.1	+	105063349,105063376,105063389,105066726,105073618,105074642,105076042,105076962,105077302,105078845,105081687,105090008,105090127,105091215,105101424	105063375,105063388,105063580,105066807,105073677,105074815,105076081,105077193,105077433,105078963,105081797,105090126,105090273,105091314,105101478	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	133254802	133254835	133254802	-	High_confidence	2	2	9	0.279249	2.750000	chr8	133254749	133254865	LINE|L2|L2b	+	chr8	133246626	133254882	NDRG1|ENST00000521664.1	-	133246626,133247874,133248714,133250439,133254538	133246663,133247926,133248771,133250543,133254882	0.555556
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	72693342	72693354	72693353	-	RAMPAGE_only	10	10	16	0.496442	3.106891	chr2	72693287	72693367	SINE|Alu|Alu	-	chr2	72496453	72826005	EXOC6B|ENST00000410112.6	-	72496453,72498453,72499900,72513131,72514633,72515042,72559452,72575491,72718102,72731006,72731154,72733070,72825797	72496559,72498551,72499972,72513252,72514680,72515126,72559521,72575668,72718307,72731052,72731245,72733118,72826005	0.812500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	18848414	18848449	18848438	-	RAMPAGE_only	4	4	14	0.434387	2.931209	chr8	18848357	18848497	SINE|5S-Deu-L2|AmnSINE1	+	chr8	18800996	18854336	PSD3|ENST00000518303.5	-	18800996,18804521,18804703,18854097	18801382,18804602,18804898,18854336	0.785714
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	79631273	79631329	79631302	+	High_confidence	137	138	548	17.003151	6.504786	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.968978
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	151650177	151650211	151650177	-	RAMPAGE_only	1	1	9	0.279249	2.750000	chr2	151650094	151650152	LINE|L2|L2a	-	chr2	151485759	151733156	NEB|ENST00000603639.5	-	151485759,151489970,151490371,151491682,151492097,151492386,151493352,151493774,151494160,151496275,151496940,151497625,151498259,151499297,151501390,151502792,151503348,151505477,151506165,151506908,151508004,151512732,151513579,151514317,151514817,151516458,151518317,151518964,151519657,151524310,151524514,151525162,151525957,151526157,151526917,151527480,151529209,151530993,151531791,151533441,151535690,151537131,151537871,151538139,151540343,151540696,151541446,151545887,151546344,151547428,151547633,151548307,151549635,151551737,151552671,151553397,151553827,151554930,151560591,151561003,151561207,151562109,151562610,151563605,151563822,151565043,151565500,151565715,151567167,151568070,151568315,151568617,151569267,151570080,151570496,151575694,151576150,151579337,151580796,151581482,151582463,151583454,151585506,151586404,151587373,151589888,151591347,151592033,151593015,151594006,151596059,151596957,151597926,151600441,151601900,151602586,151603568,151604559,151606605,151607503,151608472,151609808,151610515,151610761,151612185,151614275,151616001,151617363,151618274,151619450,151620918,151625533,151627001,151627522,151629538,151630714,151631142,151633653,151636226,151639279,151639856,151640354,151642573,151642764,151643149,151643817,151644467,151646129,151650175,151650573,151653991,151655269,151655816,151656152,151657982,151659064,151662134,151663547,151664500,151664758,151665332,151666089,151667803,151669026,151671022,151672368,151674476,151675286,151677564,151677875,151679720,151679917,151680729,151682661,151684777,151687418,151687625,151688291,151690726,151691863,151692058,151692260,151694322,151694521,151695577,151696636,151697147,151697349,151697543,151706880,151709655,151710433,151717415,151723381,151724259,151724856,151725452,151727690,151729614,151733120	151485933,151490077,151490518,151491775,151492281,151492494,151493445,151493867,151494253,151496368,151497033,151497718,151498352,151499390,151501483,151502885,151503441,151505570,151506258,151507013,151508109,151512837,151513693,151514428,151514928,151516563,151518422,151519069,151519768,151524415,151524616,151525273,151526068,151526262,151527022,151527585,151529314,151531101,151531896,151533546,151535795,151537236,151537976,151538244,151540448,151540801,151541551,151545998,151546443,151547533,151547738,151548415,151549740,151551845,151552776,151553502,151554025,151555044,151560699,151561108,151561312,151562214,151562808,151563719,151563930,151565148,151565605,151565820,151567479,151568178,151568417,151568716,151569372,151570392,151570601,151575799,151576354,151579649,151580904,151581587,151582667,151583766,151585614,151586509,151587577,151590200,151591455,151592138,151593219,151594318,151596167,151597062,151598130,151600753,151602008,151602691,151603772,151604871,151606713,151607608,151608676,151610120,151610623,151610866,151612389,151614587,151616109,151617468,151618478,151619762,151621026,151625638,151627205,151627834,151629646,151630819,151631346,151633965,151636334,151639384,151640060,151640666,151642681,151642869,151643353,151644129,151644575,151646234,151650379,151650885,151654099,151655374,151656023,151656464,151658090,151659169,151662341,151663859,151664608,151664863,151665539,151666401,151667911,151669131,151671229,151672680,151674584,151675391,151677771,151678187,151679828,151680022,151680828,151682769,151684975,151687532,151687733,151688396,151690825,151691968,151692166,151692362,151694436,151694629,151695682,151696735,151697252,151697457,151697648,151706997,151709763,151710538,151717520,151723486,151724364,151724961,151725560,151727906,151729656,151733156	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	7913248	7913268	7913248	-	RAMPAGE_only	21	22	52	1.613438	5.054587	chr1	7912865	7913475	LTR|ERV1|LTR36	+	chr1	7843082	7853512	UTS2|ENST00000377516.6	-	7843082,7846691,7847803,7849639,7850811,7852900,7853306	7843950,7846766,7847882,7849683,7850922,7853118,7853512	0.538462
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	23637956	23638046	23637996	+	High_confidence	26	26	155	4.809285	5.012106	chr14	23637705	23638396	LTR|ERV1|LTR12D	+	chr14	23638031	23645639	DHRS2|ENST00000556729.1	+	23638031,23639178,23639793,23644110,23644408,23644826,23645141	23639004,23639356,23643219,23644162,23644543,23644882,23645639	0.987097
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	108768090	108768117	108768090	+	RAMPAGE_only	2	2	7	0.217194	2.521641	chr5	108768042	108768250	LINE|CR1|L3b	-	chr5	108748966	108843001	FER|ENST00000502752.1	+	108748966,108768092,108782662,108798123,108832769,108835707,108841830,108842261	108748993,108768238,108782755,108798389,108832943,108835807,108841868,108843001	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	47067498	47067518	47067498	-	High_confidence	345	373	1279	39.684361	5.975104	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.943706
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	99620908	99620909	99620908	+	RAMPAGE_only	4	4	7	0.217194	2.584963	chr15	99620843	99621144	SINE|Alu|AluSx1	-	chr15	99632977	99716488	MEF2A|NM_001130928.2	+	99632977,99671322,99674392,99675398,99690240,99706728,99710633,99712389	99633173,99671454,99674612,99675458,99690428,99706855,99710760,99716488	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	180692008	180692009	180692008	+	High_confidence	252	254	263	8.160271	5.179686	chr2	180691204	180692425	LTR|ERV1|LTR12C	+	chr2	180692103	180916939	SCHLAP1|NR_104322.1	+	180692103,180724595,180725190,180823932,180827240,180899649,180916272	180692441,180724690,180725291,180824070,180827507,180899718,180916939	0.939163
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	7946875	7946898	7946878	+	High_confidence	16	16	43	1.334189	4.619390	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.860465
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	45825345	45825349	45825345	-	RAMPAGE_only	6	6	10	0.310276	2.921928	chr20	45825287	45825591	SINE|Alu|AluSx	-	chr20	45823213	45827314	TNNC2|NM_003279.2	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827314	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	67920076	67920114	67920113	+	High_confidence	8	8	20	0.620553	3.884184	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	95493778	95493783	95493778	-	High_confidence	2	2	6	0.186166	2.584963	chr15	95493568	95493961	LTR|ERVL-MaLR|MSTB	-	chr15	95463591	95493770	AC027013.1|ENST00000554412.2	-	95463591,95464719,95491498,95493649	95464386,95464809,95491549,95493770	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	212792444	212792473	212792472	-	High_confidence	6	10	24	0.744664	3.751629	chr1	212792351	212792653	SINE|Alu|AluJb	+	chr1	212726152	212791797	NSL1|NM_001042549.1	-	212726152,212739533,212766188,212782371,212784362,212787558,212791529	212738686,212739601,212766273,212782426,212784493,212787637,212791797	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	92579321	92579334	92579322	-	RAMPAGE_only	5	7	16	0.496442	3.323231	chr7	92579142	92579278	SINE|Alu|FLAM_C	-	chr7	92565507	92577717	FAM133B|ENST00000494079.1	-	92565507,92569822,92575770,92577102,92577654	92566061,92569915,92575821,92577195,92577717	0.812500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	143070964	143070965	143070964	+	RAMPAGE_only	28	28	33	1.023912	3.798351	chr2	143070783	143071242	LTR|ERVL-MaLR|MLT1G1	+	chr2	143091361	143238352	ARHGAP15|ENST00000409869.5	+	143091361,143092156,143155476,143202133,143216383,143228580,143235945	143091422,143092258,143155655,143202202,143216445,143228668,143238352	0.818182
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	11911660	11911664	11911660	-	RAMPAGE_only	10	10	19	0.589525	3.787144	chr8	11907116	11911625	LTR|ERV1|HERVE-int	-	chr8	11852609	11869448	CTSB|ENST00000534382.5	-	11852609,11853328,11868921	11852695,11853479,11869448	0.684211
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	30758013	30758029	30758028	+	RAMPAGE_only	19	20	38	1.179051	4.284528	chr15	30758003	30758266	LINE|L2|L2a	-	chr15	30658739	30768126	AC091057.1|ENST00000562954.1	+	30658739,30716219,30750401,30767857	30658844,30716342,30750556,30768126	0.710526
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	141646275	141646285	141646275	-	High_confidence	4	4	12	0.372332	2.855389	chr5	141646242	141646475	SINE|MIR|MIR	-	chr5	141644629	141646364	FCHSD1|ENST00000518499.1	-	141644629,141644858,141645019,141645770,141646086	141644690,141644942,141645148,141645932,141646364	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	142474407	142474443	142474407	-	High_confidence	42	44	108	3.350986	6.016474	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.842593
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	20736862	20736883	20736882	-	RAMPAGE_only	4	5	9	0.279249	2.947703	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	55094777	55094825	55094824	-	High_confidence	5	5	28	0.868774	4.469670	chr19	55094806	55095145	LINE|L2|L2a	-	chr19	55090913	55094796	PPP1R12C|ENST00000591938.5	-	55090913,55091649,55091858,55092221,55092441,55092621,55093185,55094344,55094660	55091558,55091700,55091909,55092326,55092544,55092653,55093233,55094435,55094796	0.678571
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	11587465	11587466	11587465	-	High_confidence	7	7	11	0.341304	3.121928	chr16	11587435	11587567	SINE|MIR|MIRb	+	chr16	11547721	11587466	LITAF|NR_024320.1	-	11547721,11553532,11556510,11587337	11549745,11553689,11556735,11587466	0.909091
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	75127183	75127225	75127206	-	RAMPAGE_only	55	60	242	7.508691	5.388730	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75081701	75084717	LINC02562|ENST00000561705.1	-	75081701,75084588	75082357,75084717	0.946281
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	7137088	7137110	7137097	+	RAMPAGE_only	4	4	10	0.310276	2.521928	chr12	7137127	7137213	SINE|MIR|MIR1_Amn	+	chr12	7138681	7143198	CLSTN3|ENST00000544584.1	+	7138681,7141241,7142085,7142868,7143162	7138816,7141404,7142139,7143026,7143198	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	10363964	10363974	10363964	+	High_confidence	23	24	42	1.303161	4.479503	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	64990025	64990026	64990025	-	RAMPAGE_only	6	6	8	0.248221	2.750000	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	18530927	18530946	18530927	-	RAMPAGE_only	3	3	7	0.217194	2.521641	chr11	18530726	18531024	SINE|Alu|AluY	-	chr11	18529608	18588683	UEVLD|ENST00000396197.7	-	18529608,18534329,18536405,18544622,18546879,18558227,18564891,18566346,18570213,18575346,18578723,18588612	18532487,18534453,18536469,18544796,18547050,18558330,18565010,18566482,18570377,18575412,18578808,18588683	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	9775633	9775676	9775675	+	High_confidence	10	10	22	0.682608	4.061482	chr11	9775466	9776058	LTR|ERVL|MER21C	+	chr11	9775730	9808379	SBF2-AS1|ENST00000534671.1	+	9775730,9780375,9807847	9775765,9780575,9808379	0.636364
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	134875055	134875075	134875064	+	High_confidence	5	5	18	0.558498	4.058814	chr5	134874872	134875108	SINE|MIR|MIRb	-	chr5	134875095	134888180	TXNDC15|ENST00000508810.1	+	134875095,134887694	134875188,134888180	0.611111
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	93431494	93431497	93431494	-	RAMPAGE_only	11	11	27	0.837746	4.133661	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.925926
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	2645416	2645474	2645473	-	RAMPAGE_only	6	6	25	0.775691	3.843856	chr11	2642482	2646252	LINE|L1|L1MA4A	-	chr11	2608327	2699994	KCNQ1OT1|ENST00000597346.1	-	2608327	2699994	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	76774949	76774976	76774949	+	High_confidence	4	4	14	0.434387	3.392747	chr6	76774716	76775166	LTR|ERVL|MER70A	+	chr6	76774982	76775860	AL590426.2|ENST00000607287.1	+	76774982,76775167	76775075,76775860	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	80147920	80147930	80147929	+	High_confidence	8	8	20	0.620553	4.037401	chr18	80147833	80148209	LTR|ERV1|MER66B	+	chr18	80148048	80149273	PARD6G-AS1|ENST00000588226.5	+	80148048,80148421	80148254,80149273	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	46374832	46374833	46374832	-	RAMPAGE_only	14	14	16	0.496442	3.280639	chr13	46374590	46375203	LINE|L2|L2a	+	chr13	46371940	46378645	RUBCNL|ENST00000439642.1	-	46371940,46377889,46378446	46372597,46378005,46378645	0.562500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100932252	100932274	100932252	+	High_confidence	10	10	16	0.496442	3.240224	chr14	100932283	100932357	SINE|Alu|AluSx	+	chr14	100931878	100998541	MSTRG.7387.73	+	100931878,100937402,100938879,100940364,100942761,100944808,100947033,100948977,100949514,100950401,100951431,100953963,100954921,100955884,100958261,100960060,100961026,100963964,100964352,100966644,100967638,100968647,100969458,100972261,100974125,100975410,100980576,100982503,100983460,100984347,100985654,100986618,100988708,100989693,100991490,100993834,100996885,100997486	100935881,100937488,100938956,100940450,100942838,100944872,100947116,100949039,100949596,100950472,100951494,100954046,100955006,100955949,100958343,100960219,100961132,100964000,100964439,100966731,100967786,100968724,100969545,100972346,100974203,100975496,100980663,100982585,100983542,100984434,100985740,100987630,100988790,100989780,100991565,100993907,100996916,100998541	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	15305737	15305750	15305737	+	High_confidence	3	4	7	0.217194	2.521641	chr1	15305544	15305895	LTR|ERVL-MaLR|THE1A	+	chr1	15305760	15330059	FHAD1|ENST00000375996.6	+	15305760,15308612,15313056,15316377,15317823,15324451,15327058,15328276,15329345	15305819,15308736,15313187,15316467,15317928,15324559,15327142,15328429,15330059	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	99892029	99892057	99892056	-	RAMPAGE_only	162	162	363	11.263036	5.114963	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.991736
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	36513674	36513736	36513735	+	High_confidence	7	7	28	0.868774	3.593992	chr2	36513783	36513888	SINE|MIR|MIR3	+	chr2	36513689	36529512	CRIM1|ENST00000413985.1	+	36513689,36517326,36522091,36529152	36513765,36517542,36522313,36529512	0.892857
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	37297342	37297345	37297342	+	High_confidence	4	4	11	0.341304	3.095795	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	110170594	110170696	110170695	+	RAMPAGE_only	19	19	107	3.319958	5.574085	chr9	110170636	110170928	LINE|L2|L2c	-	chr9	110125500	110172512	AKAP2|NM_001136562.2	+	110125500,110136126,110156318,110168398	110125596,110138539,110156497,110172512	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	213309919	213309951	213309950	+	RAMPAGE_only	4	4	10	0.310276	2.947703	chr2	213309538	213309970	LINE|L2|L2a	+	chr2	213296063	213364145	SPAG16|ENST00000414961.2	+	213296063,213297261,213310058,213317218,213340162,213364075	213296110,213297357,213310177,213317356,213340270,213364145	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	154975529	154975546	154975545	+	High_confidence	4	4	8	0.248221	2.750000	chr1	154975388	154975559	LINE|L2|L2c	-	chr1	154975538	154978916	CKS1B|ENST00000473344.1	+	154975538,154977986,154978724	154975608,154978114,154978916	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	9588106	9588121	9588106	-	RAMPAGE_only	1	1	7	0.217194	2.584963	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9547712	9614505	PPP4R1|ENST00000285124.12	-	9547712,9549196,9550051,9550277,9553321,9557220,9559418,9561979,9562921,9563377,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9595017,9614225,9614477	9547952,9549338,9550186,9550398,9553422,9557382,9559604,9562075,9563046,9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9595102,9614270,9614505	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	33931594	33931614	33931594	+	High_confidence	2	2	6	0.186166	2.584963	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931213	33971186	LINC00649|ENST00000400353.6	+	33931213,33945809,33969236	33931267,33945895,33971186	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	39021125	39021156	39021155	+	High_confidence	21	21	70	2.171935	5.144331	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.957143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	55067575	55067604	55067592	+	RAMPAGE_only	2	2	8	0.248221	2.807355	chr14	55067401	55067702	SINE|Alu|AluSg	-	chr14	55051643	55070194	MAPK1IP1L|NM_144578.3	+	55051643,55061679,55062617,55064615	55051803,55061701,55063325,55070194	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	31655608	31655617	31655608	-	High_confidence	2	2	7	0.217194	2.807355	chr1	31655520	31655824	LINE|L2|L2b	+	chr1	31653603	31655848	COL16A1|ENST00000461217.1	-	31653603,31653866,31654791,31655313	31653676,31654043,31654858,31655848	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	2867835	2867851	2867835	+	High_confidence	3	3	12	0.372332	3.418296	chr4	2867797	2867893	SINE|MIR|MIRb	+	chr4	2867874	2905721	ADD1|ENST00000503169.5	+	2867874,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763	2868129,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905721	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	27121384	27121424	27121399	-	RAMPAGE_only	2	3	19	0.589525	3.947703	chr10	27121058	27121361	LINE|L1|L1MB7	-	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	0.894737
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	75638829	75638849	75638841	+	RAMPAGE_only	4	4	17	0.527470	3.734522	chr6	75638774	75639064	SINE|Alu|AluJb	+	chr6	75633649	75663505	MSTRG.20218.8	+	75633649,75634706,75637712,75647730,75659261,75663220	75633726,75637633,75640704,75647801,75659407,75663505	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	80369531	80369624	80369568	+	High_confidence	27	27	81	2.513239	5.493422	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.691358
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	15829094	15829095	15829094	+	High_confidence	10	10	10	0.310276	2.921928	chr19	15828737	15829200	LTR|ERV1|LTR7C	+	chr19	15829094	15836303	UCA1|ENST00000644400.1	+	15829094,15831254,15834501,15835217,15835753	15829338,15831356,15835114,15835280,15836303	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	69304726	69304737	69304726	+	RAMPAGE_only	2	2	8	0.248221	2.521641	chr16	69304651	69304967	SINE|Alu|AluJr	-	chr16	69187146	69309052	SNTB2|NM_006750.3	+	69187146,69245601,69260049,69270142,69284047,69299589,69300831	69187746,69245815,69260260,69270285,69284244,69299774,69309052	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	88585842	88585871	88585850	-	RAMPAGE_only	2	2	9	0.279249	3.000000	chr2	88585579	88585828	LINE|L2|L2-3_Crp	-	chr2	88575382	88579969	EIF2AK3|ENST00000478003.1	-	88575382,88576553,88579517	88575446,88576703,88579969	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	10589699	10589825	10589766	-	High_confidence	8	8	49	1.520355	4.833798	chrX	10589469	10589852	LTR|ERV1|HERVE_a-int	-	chrX	10445555	10589909	MID1|ENST00000380780.5	-	10445555,10454869,10459645,10469696,10474622,10482479,10495583,10523091,10566887,10589586	10449716,10455077,10459807,10469840,10474750,10482628,10495691,10523187,10567603,10589909	0.836735
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	99410098	99410113	99410112	+	High_confidence	2	2	7	0.217194	2.584963	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	7906253	7906289	7906253	-	High_confidence	20	25	45	1.396244	5.033184	chr11	7905760	7906232	LTR|ERVK|LTR3A	-	chr11	7850750	7905955	AC044810.2|ENST00000527847.5	-	7850750,7854882,7879006,7879594,7881088,7881955,7882859,7905602	7852324,7854963,7879083,7879759,7881149,7882073,7882933,7905955	0.733333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	69624355	69624377	69624355	+	RAMPAGE_only	4	4	12	0.372332	3.251629	chr12	69624339	69624616	SINE|Alu|AluSc5	-	chr12	69738680	69817377	RAB3IP|ENST00000247833.11	+	69738680,69755383,69756404,69784719,69794436,69795140,69800208,69801608,69812777,69812963,69815363	69739031,69755659,69756663,69784815,69794514,69795344,69800337,69801721,69812877,69813033,69817377	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	40981635	40981848	40981752	+	RAMPAGE_only	20	21	293	9.091101	5.762843	chr5	40981792	40981922	SINE|MIR|MIR3	+	chr5	40909496	40982939	C7|NM_000587.2	+	40909496,40928579,40931063,40934324,40936337,40937551,40945197,40947601,40949903,40955386,40958032,40959448,40962084,40964740,40972402,40976749,40979724,40981391	40909616,40928635,40931139,40934466,40936485,40937690,40945368,40947845,40950014,40955553,40958261,40959620,40962172,40964873,40972594,40976840,40979909,40982939	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	10555125	10555126	10555125	-	RAMPAGE_only	15	15	15	0.465415	3.506891	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	126376414	126376426	126376414	+	RAMPAGE_only	3	3	7	0.217194	2.584963	chr9	126374892	126376520	LINE|L1|HAL1	-	chr9	126335218	126395697	MVB12B|ENST00000402437.2	+	126335218,126340507,126381063,126386561,126392065,126395574	126335407,126340630,126381171,126386658,126392195,126395697	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	2205819	2205860	2205823	+	High_confidence	9	11	71	2.202963	4.375887	chr16	2205830	2205972	SINE|MIR|MIRc	+	chr16	2205768	2209352	MLST8|ENST00000565250.1	+	2205768,2206060,2206357,2206496,2207034,2207192,2208209,2208449,2208758	2205875,2206214,2206409,2206659,2207110,2207345,2208334,2208613,2209352	0.985915
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	81331882	81331893	81331892	+	High_confidence	5	5	9	0.279249	2.947703	chr15	81331558	81332203	LTR|ERV1|MER50	+	chr15	81331910	81516976	TMC3-AS1|ENST00000560851.2	+	81331910,81332344,81341561,81358335,81361918,81380208,81516502	81332023,81332541,81341708,81358503,81362036,81380260,81516976	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	67183456	67183483	67183456	-	High_confidence	9	9	25	0.775691	3.849224	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.880000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73824751	73825085	73825034	-	RAMPAGE_only	38	39	247	7.663829	5.820757	chrX	73825002	73825055	SINE|MIR|MIRc	-	chrX	73823336	73829691	XIST|ENST00000649757.1	-	73823336,73829067	73827984,73829691	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	128622509	128622529	128622513	+	RAMPAGE_only	4	6	22	0.682608	3.784184	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.772727
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	29193399	29193460	29193399	+	High_confidence	114	116	426	13.217778	4.807085	chr21	29193019	29193674	LTR|ERV1|MER50B	+	chr21	29193493	29288205	LINC00189|NR_027072.2	+	29193493,29287983	29194260,29288205	0.978873
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	46684487	46684488	46684487	-	High_confidence	5	5	8	0.248221	3.000000	chr20	46684315	46684677	LTR|ERVL-MaLR|THE1C	-	chr20	46557822	46684485	SLC13A3|NM_001193340.1	-	46557822,46563413,46566228,46575572,46583571,46589159,46592403,46596156,46599970,46610445,46613459,46670042,46684395	46560198,46563551,46566390,46575685,46583669,46589255,46592529,46596342,46600037,46610609,46613725,46670139,46684485	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	11539669	11539706	11539669	+	High_confidence	3	3	13	0.403359	3.251629	chr19	11539660	11539789	SINE|MIR|MIRb	-	chr19	11539893	11547906	CNN1|ENST00000586059.5	+	11539893,11541075,11546674,11546831,11547796	11540021,11541197,11546741,11546969,11547906	0.769231
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	30812360	30812454	30812453	-	High_confidence	14	14	74	2.296046	5.098241	chr8	30812447	30812759	LINE|L1|L1M4b	+	chr8	30785609	30812836	PPP2CB|NM_001009552.1	-	30785609,30791196,30793916,30794191,30797580,30799545,30812319	30786307,30791315,30794078,30794281,30797754,30799755,30812836	0.945946
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	52429532	52429571	52429570	-	High_confidence	7	7	12	0.372332	3.584963	chr13	52429311	52429618	LINE|L2|L2b	+	chr13	52425769	52429367	VPS36|ENST00000492650.1	-	52425769,52426988,52427186,52429235	52426066,52427066,52427219,52429367	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	71745875	71745936	71745881	+	High_confidence	18	18	93	2.885571	5.051128	chr11	71741114	71748930	LTR|ERV1|HERVE-int	+	chr11	71745330	71747051	AP003498.2|ENST00000648998.1	+	71745330,71746588	71746012,71747051	0.946237
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	96343336	96343339	96343336	-	RAMPAGE_only	4	4	8	0.248221	2.807355	chr14	96343320	96343418	LINE|L1|L1PA3	+	chr14	96281257	96363341	ATG2B|NM_018036.5	-	96281257,96289655,96290435,96290813,96291599,96292028,96294959,96295481,96302006,96303060,96304494,96305588,96306713,96309452,96311116,96311541,96312088,96313064,96313328,96315153,96315383,96316532,96317144,96317697,96322111,96322539,96323895,96325648,96328346,96328673,96329483,96331375,96332304,96332500,96333687,96334404,96341521,96343118,96344653,96345232,96347178,96362814	96285985,96289805,96290590,96290935,96291682,96292098,96295167,96295560,96302108,96303255,96304603,96305815,96306916,96309594,96311287,96311618,96312159,96313157,96313435,96315234,96315583,96316683,96317317,96317855,96322254,96322735,96323998,96325922,96328535,96328766,96329634,96331637,96332410,96332655,96333873,96334501,96341701,96343281,96344756,96345385,96347341,96363341	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	46467835	46467872	46467861	-	High_confidence	29	34	79	2.451184	5.165636	chr13	46467669	46468268	LTR|ERV1|HERVE-int	+	chr13	46455138	46467857	LINC01198|ENST00000648133.1	-	46455138,46457839,46460944,46464674,46465842,46466608,46467660	46455511,46457913,46461170,46464819,46465987,46466709,46467857	0.949367
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	90251204	90251205	90251204	+	High_confidence	23	29	33	1.023912	4.680758	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.515152
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	203711086	203711097	203711096	+	RAMPAGE_only	2	2	7	0.217194	2.584963	chr1	203711131	203711274	SINE|MIR|MIRc	+	chr1	203682808	203740319	ATP2B4|ENST00000341360.6	+	203682808,203698156,203699459,203700205,203700797,203702043,203703651,203707008,203707861,203709300,203710876,203711959,203713164,203714170,203720548,203721196,203722477,203723880,203727394,203733222,203739545	203683398,203698354,203699717,203700331,203700923,203702079,203703813,203707223,203708104,203709542,203711108,203712139,203713252,203714277,203720740,203721410,203722689,203723988,203727571,203733400,203740319	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	50172401	50172417	50172410	+	High_confidence	2	2	8	0.248221	2.807355	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	180830936	180831010	180831009	+	High_confidence	12	12	52	1.613438	5.025066	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.942308
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100831344	100831398	100831344	+	RAMPAGE_only	7	7	32	0.992885	4.548394	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100829349	100861021	MSTRG.7387.30	+	100829349,100831420,100836166,100845457,100860690	100829749,100835879,100836300,100845533,100861021	0.937500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	17200632	17200651	17200632	-	High_confidence	3	3	7	0.217194	2.521641	chr10	17200615	17200697	LINE|L2|L2a	+	chr10	17159152	17201580	TRDMT1|ENST00000525762.5	-	17159152,17160304,17161482,17168840,17174550,17201570	17159229,17160374,17161548,17168917,17174660,17201580	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	92078007	92078016	92078015	-	RAMPAGE_only	6	7	13	0.403359	3.251629	chr9	92072526	92078223	LTR|ERV1|HERVH-int	+	chr9	92028457	92080076	SPTLC1|ENST00000646481.1	-	92028457,92029179,92034809,92038247,92045998,92046274,92047171,92047612,92049959,92055404,92059178,92067965,92076797,92080015	92028757,92029346,92034883,92038365,92046053,92046334,92047268,92047708,92050067,92055494,92059308,92068098,92077035,92080076	0.692308
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	45192659	45192666	45192659	-	RAMPAGE_only	23	23	37	1.148023	4.704511	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45164815	45323385	LINC01121|ENST00000427020.6	-	45164815,45166201,45168537,45189120,45192139,45211600,45300983,45322970	45164942,45166255,45168877,45189249,45192285,45211660,45301272,45323385	0.837838
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	46350849	46350870	46350849	+	RAMPAGE_only	7	8	12	0.372332	3.251629	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.916667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	75047346	75047574	75047505	+	RAMPAGE_only	23	26	309	9.587543	5.379949	chr4	75047494	75047704	DNA|hAT-Charlie|MER20	+	chr4	74933115	75050113	PARM1|ENST00000307428.7	+	74933115,75012424,75033882,75046162	74933370,75013150,75033961,75050113	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	27558484	27558504	27558503	-	High_confidence	13	14	27	0.837746	3.854286	chr1	27558497	27558557	SINE|MIR|MIR3	+	chr1	27551667	27558361	AHDC1|ENST00000487743.3	-	27551667,27552038,27552891,27553073,27558304	27551850,27552189,27552929,27553185,27558361	0.629630
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	34588450	34588453	34588452	-	High_confidence	13	20	22	0.682608	3.984184	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.863636
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	179332993	179333031	179333002	+	RAMPAGE_only	10	18	45	1.396244	4.431257	chr3	179332959	179333116	SINE|MIR|MIR1_Amn	-	chr3	179329633	179333730	ZNF639|ENST00000466663.1	+	179329633,179329933,179332988,179333268	179329728,179330055,179333123,179333730	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	123617863	123617864	123617863	+	High_confidence	6	6	8	0.248221	3.000000	chr12	123617854	123617910	LINE|RTE-X|L4_A_Mam	-	chr12	123618015	123620422	DDX55|ENST00000421670.3	+	123618015,123619431,123619963	123618837,123619724,123620422	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100906959	100907032	100906964	+	High_confidence	19	20	79	2.451184	5.243628	chr14	100906842	100907021	SINE|MIR|MIRb	-	chr14	100906043	100947076	MSTRG.7387.63	+	100906043,100906935,100931913,100938879,100940364,100942761,100944808,100947033	100906163,100931545,100937488,100938956,100940450,100942838,100944925,100947076	0.987342
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	74199383	74199405	74199404	+	High_confidence	35	36	74	2.296046	5.071869	chr8	74199086	74199513	LINE|L2|L2a	+	chr8	74199395	74208441	AC087627.1|ENST00000522339.2	+	74199395,74207358,74207720	74199532,74207493,74208441	0.945946
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	31358183	31358199	31358183	+	RAMPAGE_only	2	2	7	0.217194	2.521641	chr10	31357738	31358185	LTR|ERVL-MaLR|MLT1L	-	chr10	31322009	31358590	ZEB1|ENST00000558832.5	+	31322009,31355143,31358144	31322084,31355192,31358590	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	155343321	155343322	155343321	-	RAMPAGE_only	15	15	18	0.558498	3.690117	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.944444
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	112603113	112603117	112603114	-	RAMPAGE_only	7	9	23	0.713636	4.011365	chr3	112601964	112603244	DNA|TcMar-Tigger|Tigger1	+	chr3	112596793	112641269	CCDC80|ENST00000206423.7	-	112596793,112607175,112609977,112616709,112618967,112630112,112638027,112640326	112605763,112607256,112610081,112616858,112619104,112630269,112639916,112641269	0.913043
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	233691669	233691710	233691709	+	RAMPAGE_only	20	21	103	3.195848	6.133018	chr2	233691631	233691777	SINE|MIR|MIRc	-	chr2	233692865	233773305	UGT1A6|NM_001072.3	+	233692865,233767033,233767848,233768219,233772261	233693865,233767165,233767936,233768439,233773305	0.611650
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	147173203	147173250	147173225	+	High_confidence	4	4	24	0.744664	4.186704	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147173185	147252659	AC242426.2|ENST00000606856.1	+	147173185,147174423,147252622	147173559,147174585,147252659	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	52616791	52616797	52616791	-	RAMPAGE_only	3	3	8	0.248221	2.521641	chr19	52616561	52616863	SINE|Alu|AluSp	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	53523862	53523964	53523963	-	High_confidence	21	22	152	4.716202	6.052553	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.960526
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	6044570	6044613	6044570	-	RAMPAGE_only	6	7	40	1.241106	3.597163	chr7	6044446	6044528	DNA|hAT-Charlie|MER58B	-	chr7	6041152	6046437	EIF2AK1|ENST00000470168.1	-	6041152,6042932,6044561,6046070	6041219,6042993,6044661,6046437	0.650000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	127543805	127543811	127543805	-	RAMPAGE_only	19	20	50	1.551382	4.924597	chr9	127543678	127543822	LINE|L2|L2c	+	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.560000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	67571150	67571163	67571154	+	High_confidence	2	4	9	0.279249	2.500000	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	128369605	128369606	128369605	+	RAMPAGE_only	5	5	8	0.248221	2.521641	chr3	128369587	128369654	SINE|MIR|MIRb	+	chr3	128153500	128408642	EEFSEC|ENST00000483457.1	+	128153500,128246835,128262127,128341232,128408068	128153823,128247043,128262224,128341889,128408642	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	158167223	158167224	158167223	-	High_confidence	12	12	12	0.372332	2.792481	chr4	158167067	158167450	LINE|RTE-X|L4_A_Mam	+	chr4	158127544	158167212	FAM198B|ENST00000592586.1	-	158127544,158130785,158155610,158167176	158127614,158131012,158155825,158167212	0.583333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	70284241	70284242	70284241	+	RAMPAGE_only	5	5	8	0.248221	2.521641	chr7	70284192	70284417	LINE|L1|L1ME4a	-	chr7	70202702	70437837	MSTRG.21242.9	+	70202702,70224106,70435751	70223909,70317046,70437837	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	86353545	86353546	86353545	+	RAMPAGE_only	4	4	7	0.217194	2.584963	chr8	86353492	86353782	SINE|Alu|AluSz	-	chr8	86342764	86467952	WWP1|NM_007013.3	+	86342764,86368938,86374029,86380725,86381504,86398341,86398571,86402018,86411537,86425222,86427642,86430696,86431405,86431614,86435451,86435632,86438584,86442618,86448147,86448372,86452558,86457920,86461223,86461773,86466793	86342930,86369031,86374120,86380864,86381629,86398479,86398638,86402203,86411874,86425318,86427817,86430751,86431490,86431743,86435527,86435704,86438673,86442778,86448281,86448513,86452679,86458025,86461320,86461846,86467952	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	121313981	121314021	121314020	+	RAMPAGE_only	66	67	239	7.415608	5.240862	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.991632
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	122418188	122418204	122418203	-	RAMPAGE_only	9	9	21	0.651581	4.165894	chr11	122417876	122418534	LTR|ERV1|MER39B	+	chr11	122412430	122422839	MIR100HG|ENST00000648576.1	-	122412430,122422691	122413204,122422839	0.523810
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	33021381	33021387	33021381	-	RAMPAGE_only	3	3	8	0.248221	2.521641	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	95509593	95509617	95509599	-	RAMPAGE_only	3	4	9	0.279249	3.000000	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95461754	95554977	TTC37|ENST00000649566.1	-	95461754,95467865,95469779,95478289,95482472,95484723,95490907,95494681,95494963,95497415,95498369,95502879,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524,95516671,95516915,95517145,95520715,95522053,95523201,95523654,95524464,95525397,95525586,95528012,95529000,95530088,95536816,95537042,95540689,95541304,95541814,95543183,95547060,95548559,95550580,95553006,95554935	95464681,95467989,95469910,95478442,95482631,95484845,95491036,95494793,95495017,95497488,95498591,95503003,95503938,95507011,95509687,95512618,95513645,95514923,95516409,95516586,95516750,95517060,95517322,95520818,95522307,95523326,95523834,95524591,95525501,95525673,95528152,95529102,95530229,95536925,95537141,95540830,95541380,95541906,95543327,95547151,95548715,95550650,95553228,95554977	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	34536100	34536131	34536109	-	High_confidence	10	10	24	0.744664	4.088779	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	176277396	176277410	176277396	-	High_confidence	4	4	9	0.279249	2.750000	chr4	176277280	176277397	LINE|L2|L2c	-	chr4	176213672	176277571	MSTRG.18235.1	-	176213672,176216817,176221154,176221449,176222312,176225261,176268912,176275795,176277228	176215727,176217009,176221289,176221600,176222420,176225341,176269197,176275906,176277571	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	167937125	167937153	167937125	+	High_confidence	2	2	9	0.279249	2.500000	chr1	167936970	167937179	LINE|L1|L1MDb	-	chr1	167937152	167993330	DCAF6|ENST00000455334.5	+	167937152,167951799,167966628,167974829,167987494,167991203,167993225	167937252,167951861,167966721,167975015,167987608,167991339,167993330	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	4726490	4726511	4726490	-	RAMPAGE_only	3	3	9	0.279249	2.725481	chr9	4725911	4728263	DNA|TcMar-Tigger|Tigger1	-	chr9	4712974	4741227	MSTRG.22991.4	-	4712974,4718418,4719134,4722505,4726082,4740936	4713096,4718537,4719307,4722625,4727924,4741227	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100906104	100906133	100906104	+	High_confidence	20	20	71	2.202963	4.909496	chr14	100905713	100906123	LINE|L1|L1MC5	-	chr14	100906043	100947076	MSTRG.7387.63	+	100906043,100906935,100931913,100938879,100940364,100942761,100944808,100947033	100906163,100931545,100937488,100938956,100940450,100942838,100944925,100947076	0.985915
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	47743725	47743747	47743725	+	High_confidence	12	12	46	1.427272	4.863749	chr10	47743739	47743881	LTR|ERVL|LTR41B	+	chr10	47743698	47759041	LOC102724593|NR_134489.1	+	47743698,47758684	47744010,47759041	0.543478
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	34405962	34405966	34405965	-	RAMPAGE_only	27	27	50	1.551382	4.839662	chr10	34405665	34405965	LTR|ERVL|LTR40b	-	chr10	34312263	34426731	PARD3|ENST00000544292.5	-	34312263,34317106,34331116,34336198,34337277,34341626,34347964,34359146,34360070,34374873,34377966,34382539,34384128,34399329,34401825,34426684	34312382,34317338,34331344,34336243,34337426,34341816,34348115,34359317,34360259,34375002,34378106,34382922,34384254,34399413,34401917,34426731	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	38354261	38354272	38354271	+	RAMPAGE_only	3	3	8	0.248221	2.807355	chr13	38354306	38354393	LINE|L1|L1M5	+	chr13	38349880	38363619	UFM1|ENST00000239878.8	+	38349880,38349998,38354238,38358092,38359300,38360710	38349921,38350055,38354296,38358132,38359333,38363619	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	31021460	31021487	31021472	+	RAMPAGE_only	9	9	31	0.961857	3.752584	chr4	31021457	31021573	LTR|ERVL-MaLR|MLT1J2	-	chr4	30920152	31056460	MSTRG.17465.9	+	30920152,30950119,30987577,31013350	30920369,30950215,31012325,31056460	0.967742
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	52236199	52236218	52236216	-	RAMPAGE_only	2	4	8	0.248221	2.521641	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52167708	52291557	AL158066.1|ENST00000451298.1	-	52167708,52169986,52171157,52175638,52180581,52183975,52186682,52189638,52223238,52227004,52229325,52233063,52235219,52253744,52253936,52258528,52279840,52280651,52280861,52283237,52289821,52291506	52169304,52170099,52171248,52175776,52180654,52184114,52186823,52189914,52223331,52227096,52229431,52233144,52235281,52253833,52254018,52258590,52279905,52280715,52280961,52283357,52289983,52291557	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	61647025	61647043	61647025	-	High_confidence	5	5	12	0.372332	3.251629	chr8	61646951	61647212	LINE|L2|L2a	+	chr8	61626140	61646872	ASPH|ENST00000519678.5	-	61626140,61633682,61637946,61642887,61643385,61643944,61644599,61646749	61626280,61633727,61638003,61642920,61643433,61644001,61644632,61646872	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	220140272	220140276	220140275	+	High_confidence	3	3	8	0.248221	2.521641	chr1	220140323	220140598	SINE|Alu|AluSz6	+	chr1	220140180	220143344	IARS2|ENST00000467924.1	+	220140180,220141802,220142943	220140289,220141948,220143344	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	65424044	65424083	65424044	+	High_confidence	14	14	36	1.116995	3.744843	chr18	65423814	65424190	LTR|ERVL-MaLR|THE1C	+	chr18	65424012	65447512	LINC01916|ENST00000582028.1	+	65424012,65441689,65447146	65424071,65441823,65447512	0.944444
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	171555566	171555786	171555675	+	RAMPAGE_only	13	14	120	3.723318	5.208596	chr2	171555665	171555905	SINE|MIR|MIR	-	chr2	171522476	171557646	CYBRD1|ENST00000375252.3	+	171522476,171553345,171554523	171522738,171553500,171557646	0.983333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	103569736	103569737	103569736	-	RAMPAGE_only	6	6	6	0.186166	2.584963	chr12	103565929	103570866	LINE|L1|L1PA17	+	chr12	103237590	103496010	C12orf42|NR_103526.1	-	103237590,103263325,103267633,103267852,103269806,103273791,103277149,103368886,103401606,103478348,103495901	103237902,103263371,103267708,103268962,103269853,103273883,103277210,103368998,103401675,103478447,103496010	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	17692258	17692259	17692258	-	High_confidence	7	7	9	0.279249	2.750000	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	246417412	246417413	246417412	-	High_confidence	5	5	8	0.248221	2.750000	chr1	246417275	246418033	LTR|ERV1|LTR8B	-	chr1	245749339	246417412	SMYD3|NM_022743.2	-	245749339,245764040,245858495,245863798,245915529,245927930,245929869,246327200,246330479,246335366,246355030,246417295	245749664,245764149,245858670,245863886,245915640,245928033,245929937,246327337,246330537,246335474,246355094,246417412	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	166850123	166850128	166850124	+	RAMPAGE_only	8	15	22	0.682608	3.844233	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	0.954545
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	128619061	128619071	128619061	+	RAMPAGE_only	5	5	11	0.341304	2.721928	chr7	128619037	128619073	LINE|L2|L2c	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	0.909091
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	17282895	17282940	17282939	+	RAMPAGE_only	7	7	31	0.961857	4.825164	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17276983	17310927	NUCB2|ENST00000529313.5	+	17276983,17282788,17286633,17295323,17296103,17301743,17309571,17310824	17277095,17282943,17286717,17295467,17296211,17301870,17309675,17310927	0.935484
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	174118129	174118209	174118129	-	RAMPAGE_only	3	3	28	0.868774	4.521641	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075408	174124315	OLA1|ENST00000392560.6	-	174075408,174078967,174081151,174081923,174123179,174123594,174124263	174075527,174079090,174081248,174082064,174123277,174123675,174124315	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	9140393	9140428	9140427	+	High_confidence	42	42	149	4.623119	6.038855	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140414	9163415	ZNF317|ENST00000591278.5	+	9140414,9155924,9156611,9157267,9157833,9158825,9160113	9140592,9156041,9156748,9157394,9158075,9158908,9163415	0.872483
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	8436023	8436026	8436023	-	RAMPAGE_only	4	4	10	0.310276	2.947703	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8366281	8440711	ACOX3|ENST00000356406.9	-	8366281,8370907,8373560,8374977,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765,8416377,8440647	8367080,8370994,8373628,8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415999,8416535,8440711	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	186602127	186602136	186602135	+	RAMPAGE_only	6	6	12	0.372332	3.084963	chr2	186602116	186602175	LINE|RTE-BovB|MamRTE1	-	chr2	186600204	186677441	ITGAV|ENST00000433736.6	+	186600204,186602020,186622338,186625472,186630796,186633328,186636081,186637064,186638276,186638408,186640914,186641385,186646685,186649839,186651981,186654649,186656246,186659037,186663767,186664493,186665125,186666703,186667149,186667670,186668761,186669700,186675603,186675819,186676812,186677196	186600381,186602151,186622430,186625587,186630858,186633374,186636207,186637109,186638320,186638465,186640967,186641588,186646877,186649885,186652089,186654708,186656401,186659175,186663835,186664641,186665218,186666783,186667230,186667776,186668920,186669814,186675717,186675927,186676935,186677441	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	35713372	35713381	35713372	-	High_confidence	4	4	9	0.279249	2.500000	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	21874140	21874194	21874140	-	High_confidence	5	5	25	0.775691	3.907268	chr1	21874115	21874327	SINE|MIR|MIRb	-	chr1	21872858	21874706	HSPG2|ENST00000427897.1	-	21872858,21873374,21873924,21874405,21874615	21873091,21873424,21874011,21874533,21874706	0.760000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	80485592	80485593	80485592	+	High_confidence	9	9	11	0.341304	3.459432	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.727273
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	179273212	179273213	179273212	+	RAMPAGE_only	8	8	9	0.279249	2.750000	chr1	179273172	179273276	LINE|L2|L2c	-	chr1	179293713	179358680	SOAT1|NM_003101.5	+	179293713,179302676,179323436,179335505,179337836,179339437,179341027,179342113,179342861,179343589,179344946,179347599,179348843,179350295,179351316,179353584	179293936,179302802,179323495,179335657,179337896,179339545,179341310,179342192,179342943,179343635,179345076,179347697,179348942,179350431,179351462,179358680	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	37903557	37903558	37903557	-	High_confidence	4	4	7	0.217194	2.521641	chr9	37903533	37903620	SINE|MIR|MIR3	+	chr9	37887603	37904110	SLC25A51|ENST00000377716.6	-	37887603,37899828,37903530	37888592,37899950,37904110	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	52169761	52169767	52169761	-	High_confidence	6	6	10	0.310276	2.725481	chr19	52169654	52169811	SINE|Alu|AluJb	+	chr19	52165183	52169734	ZNF836|ENST00000602187.1	-	52165183,52168057,52169647	52165385,52168152,52169734	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	52282178	52282221	52282178	+	RAMPAGE_only	2	3	17	0.527470	3.327820	chr10	52282132	52282197	LINE|CR1|L3	+	chr10	52046866	52294176	PRKG1|ENST00000373975.3	+	52046866,52054483,52062536,52081596,52133839,52161888,52251569,52271349,52272391,52280788,52282152,52288725,52288930,52290223,52293801	52046926,52054561,52062631,52081657,52133905,52161963,52251666,52271489,52272481,52280930,52282316,52288848,52288993,52290290,52294176	0.882353
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	55618850	55618870	55618850	-	High_confidence	3	4	8	0.248221	2.750000	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55614175	55618880	PPP4R3B|ENST00000612688.1	-	55614175,55617143,55618065	55615506,55617978,55618880	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	74000371	74000404	74000371	+	RAMPAGE_only	2	2	12	0.372332	3.277613	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.916667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	75199311	75199328	75199311	-	RAMPAGE_only	1	1	7	0.217194	2.584963	chr6	75199165	75199346	SINE|MIR|MIR3	+	chr6	75084325	75205822	MSTRG.20217.1	-	75084325,75087576,75089105,75090109,75091322,75091489,75095107,75097252,75101599,75101998,75102596,75103756,75105205,75106418,75109017,75113203,75113601,75115783,75116018,75117381,75119042,75119349,75121301,75123329,75123947,75124254,75125126,75126350,75128295,75130090,75130851,75131939,75133292,75133857,75134725,75137436,75138319,75138447,75138821,75142031,75143247,75145325,75146101,75147674,75148357,75151140,75151866,75152130,75152332,75154415,75155661,75156256,75165506,75175037,75177662,75180938,75183049,75183853,75188361,75189216,75189551,75191700,75192211,75194830,75205776	75086557,75087747,75089174,75090298,75091389,75091525,75095179,75097306,75101653,75102052,75102692,75103810,75105292,75106496,75109167,75113313,75113744,75115922,75116057,75117546,75119186,75119473,75121441,75123404,75124094,75124371,75125273,75126470,75128425,75130233,75130981,75132082,75133422,75133997,75134855,75137579,75138340,75138580,75138961,75142157,75143388,75145455,75146244,75147804,75148497,75151287,75152031,75152250,75152482,75154537,75155854,75156523,75165779,75175310,75177935,75181211,75183652,75184144,75188535,75189381,75189815,75191760,75192355,75202827,75205822	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	45823800	45823823	45823822	-	High_confidence	10	13	17	0.527470	3.500000	chr19	45823777	45823871	LINE|RTE-BovB|MamRTE1	-	chr19	45816482	45824012	SYMPK|ENST00000598329.2	-	45816482,45816797,45817958,45821383,45822755,45823371,45823766	45816577,45816974,45818146,45821485,45822846,45823472,45824012	0.647059
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	57451517	57451576	57451564	+	RAMPAGE_only	21	25	116	3.599207	5.047552	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	119420440	119420465	119420440	+	RAMPAGE_only	4	4	14	0.434387	3.392747	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.928571
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	25818614	25818620	25818614	+	High_confidence	3	3	8	0.248221	3.000000	chr1	25818458	25818747	LTR|ERVL|LTR16A1	-	chr1	25818639	25829514	MTFR1L|ENST00000424294.5	+	25818639,25823018,25823643,25826301,25826614,25829508	25818852,25823128,25823748,25826411,25826826,25829514	0.625000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	40509494	40509519	40509494	+	RAMPAGE_only	79	81	222	6.888138	5.771076	chr7	40509191	40509921	LINE|L1|L1MD2	-	chr7	40793181	40860757	SUGCT|ENST00000464028.1	+	40793181,40860315	40793248,40860757	0.824324
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	4239730	4239749	4239748	-	High_confidence	15	18	40	1.241106	4.543943	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.700000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	20658312	20658349	20658338	+	High_confidence	11	13	65	2.016797	4.389945	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20823049	MSTRG.23100.1	+	20658308,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20820323,20820940,20822988	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20820425,20821071,20823049	0.723077
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	4782405	4782416	4782405	+	High_confidence	3	3	8	0.248221	2.807355	chr3	4782402	4782508	DNA|hAT-Charlie|MER117	+	chr3	4782339	4788458	ITPR1|ENST00000481415.2	+	4782339,4783815,4787946	4782741,4783920,4788458	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	26395611	26395612	26395611	+	High_confidence	10	11	11	0.341304	3.277613	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.636364
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	91179059	91179089	91179064	-	High_confidence	6	6	16	0.496442	3.773557	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91158311	91179355	DCN|ENST00000550563.5	-	91158311,91164604,91178341,91179317	91158509,91164717,91178585,91179355	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	102365575	102365582	102365581	+	RAMPAGE_only	3	3	9	0.279249	2.500000	chr10	102365629	102365874	SINE|Alu|AluJb	+	chr10	102245531	102382899	GBF1|ENST00000369983.3	+	102245531,102258928,102260049,102344050,102351255,102351842,102352457,102353599,102358038,102358505,102359269,102360183,102361021,102361717,102362474,102363255,102363709,102365396,102366382,102367084,102367477,102368217,102368738,102369210,102369710,102369860,102370173,102370383,102370706,102375358,102376271,102376559,102376934,102379283,102379520,102379852,102380248,102380505,102381126,102382055	102245781,102259034,102260116,102344182,102351374,102351951,102352518,102353654,102358186,102358729,102359435,102360395,102361120,102361912,102362664,102363396,102363798,102365599,102366506,102367210,102367560,102368454,102368832,102369387,102369775,102369984,102370245,102370478,102370860,102375584,102376432,102376800,102377140,102379434,102379651,102379954,102380362,102380686,102381255,102382899	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	17374837	17374876	17374855	+	High_confidence	6	6	22	0.682608	4.004886	chr7	17374884	17375084	SINE|MIR|MIRb	+	chr7	17374866	17466664	KCCAT333|ENST00000419463.1	+	17374866,17448880,17450994,17466151	17375055,17448948,17451061,17466664	0.772727
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	34233920	34233921	34233920	+	RAMPAGE_only	7	7	9	0.279249	3.169925	chr9	34233518	34234003	LINE|L2|L2a	-	chr9	34220438	34252522	UBAP1|ENST00000359544.2	+	34220438,34220907,34234215,34241184,34249778,34250657,34251391	34220467,34220948,34234340,34242108,34249961,34250759,34252522	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	108923708	108923741	108923708	+	RAMPAGE_only	5	6	17	0.527470	3.381580	chr11	108923524	108923886	LINE|L2|L2c	-	chr11	108929518	108940925	DDX10|ENST00000534221.1	+	108929518,108940245	108929708,108940925	0.882353
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	3380960	3380961	3380960	+	High_confidence	30	31	31	0.961857	4.415061	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.677419
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	128648825	128648834	128648830	+	RAMPAGE_only	2	3	8	0.248221	2.521641	chr7	128648764	128648951	SINE|Alu|AluJb	-	chr7	128651184	128652334	AC018638.4|ENST00000465971.1	+	128651184	128652334	0.625000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	89888037	89888054	89888037	+	RAMPAGE_only	4	4	11	0.341304	3.095795	chr10	89888002	89888814	LTR|ERV1|LTR8B	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.818182
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	56999292	56999313	56999312	-	RAMPAGE_only	11	13	33	1.023912	4.327820	chr6	56998981	56999851	LINE|L1|L1PA15-16	+	chr6	56640466	56954628	DST|ENST00000449297.6	-	56640466,56641946,56642409,56645865,56646086,56648569,56650925,56651131,56670640,56699652,56701887,56704279,56735227,56851396,56900420,56953784,56954406	56640605,56642101,56642503,56645993,56646182,56648689,56651032,56651244,56670807,56699745,56701965,56704369,56735289,56851604,56900621,56953819,56954628	0.727273
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	69996417	69996454	69996417	-	RAMPAGE_only	4	4	12	0.372332	3.095795	chr16	69996297	69996477	SINE|MIR|MIRb	+	chr16	69993019	70021930	PDXDC2P-NPIPB14P|ENST00000525331.5	-	69993019,69996068,69996389,70010750,70011840,70014103,70018046,70021823	69993248,69996226,69996468,70010856,70011929,70014167,70018097,70021930	0.916667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	86395136	86395174	86395136	+	High_confidence	7	7	39	1.210078	4.682587	chr11	86395046	86395200	DNA|TcMar-Mariner|MARNA	+	chr11	86395173	86423109	CCDC81|ENST00000528728.1	+	86395173,86397620,86400677,86407613,86409260,86412386,86414788,86415092,86419927,86422573	86395413,86397742,86400801,86407701,86409365,86412559,86414867,86415313,86420053,86423109	0.897436
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	48979425	48979436	48979425	+	RAMPAGE_only	4	6	12	0.372332	3.277613	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.916667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	47658623	47658635	47658629	-	High_confidence	3	3	11	0.341304	2.732159	chrX	47658369	47658606	SINE|MIR|MIR	-	chrX	47651800	47659107	UXT|ENST00000485641.5	-	47651800,47652080,47657182,47657781,47658829	47651895,47652144,47657290,47657863,47659107	0.636364
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	200889060	200889318	200889293	-	High_confidence	79	82	754	23.394846	7.334349	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.677719
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	130079484	130079508	130079507	+	RAMPAGE_only	4	4	10	0.310276	2.947703	chr9	130079384	130079578	SINE|MIR|MIRb	+	chr9	130053924	130136123	GPR107|ENST00000610997.1	+	130053924,130075635,130076411,130077298,130079629,130083564,130086419,130090875,130092247,130099456,130100628,130101105,130104419,130107495,130110369,130114572,130124914,130127482,130128639,130135024	130054073,130075749,130076462,130077378,130079769,130083602,130086476,130090983,130092381,130099532,130100702,130101223,130104550,130107539,130110422,130114663,130124964,130127566,130128761,130136123	0.700000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	50785191	50785258	50785222	+	RAMPAGE_only	7	7	30	0.930829	4.073330	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.933333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	9965305	9965321	9965320	+	RAMPAGE_only	29	29	49	1.520355	5.136842	chr12	9965257	9965407	LTR|ERV1|HERVH-int	-	chr12	9971408	9984241	CLEC12A|NM_001300730.1	+	9971408,9978965,9979335,9980581,9982019,9983529	9971687,9979064,9979524,9980733,9982129,9984241	0.551020
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	7115158	7115173	7115158	+	RAMPAGE_only	4	4	11	0.341304	3.321928	chr12	7114990	7115194	LINE|L2|L2b	+	chr12	7108307	7121851	C1RL-AS1|NR_026947.1	+	7108307,7108672,7110063,7110297,7111024,7112006,7115129,7115385,7118898,7119499,7120505,7121711	7108481,7108947,7110147,7110572,7111606,7112064,7115219,7118677,7119026,7119553,7120625,7121851	0.818182
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	13386132	13386133	13386132	+	RAMPAGE_only	182	184	241	7.477663	5.809606	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.788382
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	43055406	43055407	43055406	+	RAMPAGE_only	8	8	9	0.279249	3.000000	chr13	43054750	43055573	LTR|ERV1|LTR19C	+	chr13	43023225	43109170	DNAJC15|NM_013238.2	+	43023225,43065685,43068929,43078611,43085767,43107177	43023734,43065737,43069003,43078688,43085838,43109170	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	33402881	33402883	33402881	+	High_confidence	7	9	12	0.372332	3.095795	chr21	33402902	33402973	SINE|Alu|AluSc	+	chr21	33402895	33437521	IFNGR2|ENST00000290219.10	+	33402895,33414887,33421479,33426883,33432176,33432713,33436827	33403616,33415020,33421685,33427032,33432336,33432871,33437521	0.916667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	15006394	15006395	15006394	+	RAMPAGE_only	5	5	8	0.248221	2.807355	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	120124453	120124463	120124453	+	High_confidence	3	4	7	0.217194	2.521641	chr8	120124361	120124487	DNA|hAT-Charlie|MER5A	+	chr8	120125107	120373575	COL14A1|NM_021110.3	+	120125107,120147805,120158129,120162425,120168160,120196790,120197810,120199401,120203708,120206942,120208231,120209755,120212447,120216350,120225087,120226626,120227219,120228709,120231466,120243878,120247612,120250616,120255239,120262867,120266826,120270034,120278110,120278434,120279934,120280710,120280920,120283635,120285860,120289607,120297510,120300731,120310008,120313931,120315532,120315943,120332140,120332663,120341324,120342379,120345374,120367170,120369329,120371151	120125340,120147930,120158246,120162569,120168247,120196946,120197930,120199566,120203870,120207094,120208361,120209901,120212577,120216490,120225214,120226766,120227352,120228769,120231618,120244008,120247735,120250766,120255356,120263014,120266883,120270174,120278234,120278578,120280099,120280749,120281059,120283778,120285970,120289766,120297588,120300818,120310062,120314027,120315586,120315997,120332194,120332735,120341360,120342446,120345563,120367248,120369485,120373575	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	26914558	26914572	26914558	-	RAMPAGE_only	4	4	11	0.341304	3.277613	chr12	26914520	26914587	LINE|RTE-BovB|MamRTE1	+	chr12	26905180	26917734	INTS13|ENST00000538155.5	-	26905180,26906301,26911177,26913456,26913973,26916001,26917351,26917643	26905536,26906437,26911317,26913687,26914128,26916180,26917441,26917734	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	39810023	39810116	39810033	-	High_confidence	28	28	110	3.413041	5.225467	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807380	39810058	GLIDR|ENST00000618092.2	-	39807380,39809730	39809633,39810058	0.554545
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	29497474	29497477	29497474	+	High_confidence	6	6	12	0.372332	3.251629	chr6	29497305	29497670	LTR|ERVL-MaLR|THE1D	+	chr6	29497508	29510556	AL662860.1|ENST00000436804.1	+	29497508,29505320,29507168,29510267	29497539,29505377,29507668,29510556	0.916667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	65570509	65570536	65570521	+	High_confidence	65	95	236	7.322525	6.741750	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.550847
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100935606	100935625	100935624	+	RAMPAGE_only	5	5	9	0.279249	2.503258	chr14	100934354	100935764	LINE|L1|L1M2	-	chr14	100907042	100947076	MSTRG.7387.66	+	100907042,100910232,100913431,100935771,100938879,100940364,100942761,100944808,100947033	100907132,100910304,100913521,100937488,100938956,100940450,100942838,100944925,100947076	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	5726324	5726325	5726324	-	High_confidence	136	147	195	6.050391	5.608305	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.748718
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	178706469	178706482	178706469	-	RAMPAGE_only	3	4	6	0.186166	2.584963	chr2	178706142	178706425	DNA|TcMar-Tigger|MER2	-	chr2	178527011	178804642	TTN|ENST00000615779.5	-	178527011,178527445,178528273,178528527,178529959,178530240,178535981,178536937,178537341,178538539,178538945,178539381,178540067,178541281,178542263,178542661,178543068,178543833,178544200,178545387,178545819,178546211,178546599,178547002,178547406,178549569,178549985,178550966,178551629,178553501,178553913,178554452,178554864,178556847,178557252,178557647,178558340,178559310,178576528,178576922,178577601,178577987,178578610,178578805,178579560,178579938,178580321,178581498,178581905,178582295,178582939,178583606,178584275,178584668,178585071,178586504,178587117,178587515,178587898,178588537,178591598,178591977,178592378,178592774,178593172,178593567,178593960,178594343,178595506,178597537,178597907,178598505,178598747,178599145,178599553,178600853,178601264,178601657,178601881,178602001,178602281,178603875,178604707,178604986,178605413,178607020,178607400,178607784,178608177,178608605,178609207,178609683,178610089,178610992,178611371,178611757,178612056,178612276,178612772,178613160,178613750,178614051,178614465,178614846,178615306,178615640,178616478,178616728,178617119,178617324,178617778,178618188,178618583,178619620,178619987,178620216,178620714,178621101,178621474,178621839,178622669,178624464,178625272,178629300,178630240,178630803,178631033,178632146,178632525,178632917,178633186,178633412,178633816,178634365,178634722,178635164,178635439,178635962,178636397,178637368,178639698,178640047,178640540,178641240,178642236,178644547,178645919,178649816,178650163,178650750,178651242,178651452,178651665,178651883,178652095,178652263,178652457,178659004,178659171,178662965,178670217,178671089,178671970,178672406,178672634,178673632,178674313,178675038,178675920,178677620,178678124,178678413,178678746,178679338,178679598,178679893,178680253,178681078,178681375,178681660,178682696,178683210,178683998,178684329,178684665,178684905,178685252,178685517,178688110,178688676,178689052,178689289,178689514,178689812,178692015,178692496,178693608,178693921,178694598,178694828,178695347,178695864,178697120,178698842,178701119,178701527,178702039,178702167,178702453,178704146,178704509,178704876,178705173,178706453,178706861,178707525,178709565,178710634,178711061,178711943,178712314,178712696,178713084,178713896,178714291,178714985,178715492,178717094,178717522,178717942,178718321,178718694,178719163,178719553,178719982,178720384,178720920,178721846,178722258,178722658,178723045,178723417,178723855,178724259,178725367,178725767,178727089,178727584,178728109,178728499,178728890,178729287,178729663,178730092,178730504,178730924,178731304,178731692,178732065,178732439,178732833,178733238,178733613,178734327,178734706,178735510,178738081,178739140,178753123,178758983,178764176,178764526,178766380,178767758,178768013,178768672,178769678,178770059,178770411,178771210,178773108,178773461,178773837,178774206,178774920,178775355,178777148,178777419,178777703,178778873,178779228,178779999,178781120,178782211,178782538,178782805,178783719,178784069,178785619,178785847,178789359,178789977,178790707,178792071,178793403,178794398,178794921,178799486,178799824,178800394,178802137,178804551	178527307,178527748,178528427,178529219,178530116,178535849,178536575,178537243,178537917,178538839,178539251,178539966,178540370,178541584,178542563,178542949,178543662,178544115,178544506,178545693,178546116,178546502,178546905,178547305,178549473,178549869,178550273,178551260,178553396,178553807,178554216,178554752,178555152,178557144,178557555,178558235,178558637,178576416,178576831,178577510,178577898,178578185,178578715,178579393,178579848,178580229,178580609,178581804,178582208,178582592,178583227,178583906,178584578,178584968,178585347,178586807,178587417,178587800,178588219,178591504,178591892,178592277,178592660,178593083,178593475,178593867,178594242,178594646,178595809,178597819,178598058,178598654,178599062,178599445,178599850,178601171,178601564,178601787,178601914,178602150,178602590,178604305,178604898,178605295,178605713,178607314,178607685,178608081,178608477,178608908,178609570,178609986,178610389,178611271,178611677,178611954,178612162,178612576,178613072,178613276,178613937,178614348,178614753,178614968,178615484,178615788,178616630,178617013,178617234,178617512,178618081,178618491,178618853,178619887,178620112,178620625,178620993,178621368,178621741,178622008,178622767,178624731,178625396,178629443,178630367,178630943,178631300,178632413,178632792,178633044,178633326,178633676,178634083,178634629,178634849,178635304,178635715,178636241,178636799,178637419,178639788,178640110,178640630,178641315,178642317,178644616,178646030,178649894,178650271,178650834,178651320,178651536,178651749,178651967,178652179,178652347,178652541,178659088,178659255,178663055,178670295,178671170,178672267,178672481,178672703,178673710,178674409,178675113,178675995,178677917,178678208,178678497,178678830,178679416,178679682,178680055,178680331,178681171,178681450,178681738,178682903,178683291,178684082,178684413,178684749,178684989,178685330,178685598,178688224,178688778,178689136,178689373,178689595,178689896,178692099,178692580,178693689,178694008,178694676,178694906,178695410,178696269,178697168,178698914,178701203,178701587,178702066,178702245,178702663,178704407,178704777,178704966,178705357,178706739,178706954,178707813,178709856,178710922,178711349,178712222,178712593,178712975,178713372,178714175,178714573,178715264,178715774,178717382,178717810,178718221,178718600,178718973,178719451,178719832,178720264,178720663,178721202,178722134,178722546,178722937,178723324,178723696,178724143,178724538,178725649,178726046,178727371,178727863,178728397,178728778,178729169,178729566,178729945,178730371,178730792,178731203,178731583,178731971,178732347,178732718,178733121,178733517,178733892,178734606,178734988,178736074,178738360,178741921,178753180,178759172,178764302,178764811,178766612,178767924,178768155,178768933,178769939,178770320,178770675,178771471,178773369,178773725,178774110,178774473,178775202,178777049,178777317,178777584,178777975,178779118,178779462,178780205,178781263,178782427,178782602,178783064,178783785,178784351,178785742,178786141,178789497,178790115,178790845,178792197,178793541,178794551,178795252,178799731,178799910,178800682,178802341,178804642	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	135615189	135615202	135615189	+	RAMPAGE_only	7	7	12	0.372332	3.251629	chr8	135614769	135615255	LTR|ERV1|MER31A	-	chr8	135606955	135647258	KHDRBS3|ENST00000518728.1	+	135606955,135647143	135607037,135647258	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	128626776	128626821	128626815	-	RAMPAGE_only	5	5	19	0.589525	3.616349	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	183132207	183132246	183132235	+	RAMPAGE_only	4	4	10	0.310276	2.721928	chr1	183132016	183132292	SINE|Alu|AluSx	+	chr1	183128595	183133538	LAMC1|ENST00000478064.1	+	183128595,183130343,183131298,183132399,183133405	183128820,183130549,183131378,183132537,183133538	0.700000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	65244454	65244457	65244454	-	RAMPAGE_only	35	36	52	1.613438	4.842186	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	86482564	86482578	86482577	+	RAMPAGE_only	23	23	38	1.179051	4.162024	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.736842
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	84172094	84172095	84172094	-	High_confidence	161	170	203	6.298612	6.355268	chr10	84171986	84172465	LTR|ERV1|LTR2B	-	chr10	84167227	84172093	CERNA2|ENST00000647830.1	-	84167227,84171721	84168729,84172093	0.527094
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	26284538	26284551	26284538	-	RAMPAGE_only	5	5	10	0.310276	2.721928	chr1	26284514	26284630	SINE|MIR|MIR3	-	chr1	26282304	26298026	UBXN11|ENST00000496466.1	-	26282304,26282648,26282863,26284141,26284361,26285822,26294204,26296918,26297426,26297961	26282569,26282789,26282937,26284281,26285541,26286037,26294331,26296995,26297481,26298026	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	50756879	50756987	50756942	-	RAMPAGE_only	10	15	84	2.606322	4.787744	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.988095
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	209429028	209429086	209429028	+	High_confidence	6	6	23	0.713636	3.533771	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.913043
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	52215792	52215818	52215807	+	RAMPAGE_only	3	4	15	0.465415	3.378783	chr19	52215807	52215838	LINE|L2|L2b	-	chr19	52212829	52219734	PPP2R1A|ENST00000473820.1	+	52212829,52215778,52216003,52216528,52219690	52213110,52215893,52216074,52216663,52219734	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	77169312	77169334	77169312	-	High_confidence	4	5	9	0.279249	2.641604	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77092201	77169319	PIGK|ENST00000487906.5	-	77092201,77122274,77154448,77161294,77161593,77163845,77169259	77092490,77122359,77154621,77161405,77161711,77163942,77169319	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	88126304	88126351	88126304	-	RAMPAGE_only	2	2	9	0.279249	2.500000	chr12	88126179	88126283	LINE|L2|L2a	-	chr12	88093596	88129711	CEP290|ENST00000604024.5	-	88093596,88096887,88102837,88106674,88106995,88109065,88111201,88111693,88114419,88115097,88115477,88117032,88118482,88118642,88120113,88120996,88125245,88126315,88128945,88129693	88093975,88096999,88103011,88106905,88107098,88109181,88111351,88111858,88114562,88115182,88115570,88117145,88118570,88118743,88120276,88121166,88125369,88126438,88129035,88129711	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100831428	100831504	100831484	+	RAMPAGE_only	6	10	55	1.706521	5.209867	chr14	100831360	100831580	LINE|L2|L2b	+	chr14	100829349	100861021	MSTRG.7387.30	+	100829349,100831420,100836166,100845457,100860690	100829749,100835879,100836300,100845533,100861021	0.909091
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	6702632	6702650	6702632	-	High_confidence	9	9	21	0.651581	3.784942	chr19	6702615	6702750	SINE|Alu|AluSz	+	chr19	6697661	6702872	C3|ENST00000602053.1	-	6697661,6702126,6702470	6697794,6702212,6702872	0.809524
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	150125450	150125474	150125450	-	RAMPAGE_only	9	10	17	0.527470	3.250000	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.882353
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	32684271	32684272	32684271	-	RAMPAGE_only	7	7	9	0.279249	3.000000	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32494718	32659406	MYO1D|ENST00000577352.5	-	32494718,32605086,32638721,32653842,32654476,32659114	32494915,32605241,32638835,32653947,32654621,32659406	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	30561569	30561570	30561569	-	High_confidence	4	5	6	0.186166	2.584963	chr7	30561212	30561820	DNA|hAT?|MER99	+	chr7	30550567	30561519	GARS-DT|ENST00000577889.1	-	30550567,30551317,30552099,30561465	30550781,30551395,30552179,30561519	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	93499283	93499310	93499289	-	High_confidence	3	3	18	0.558498	3.725481	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	176162936	176162978	176162936	-	RAMPAGE_only	10	10	31	0.961857	4.413716	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.709677
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	244457	244458	244457	-	RAMPAGE_only	10	10	10	0.310276	3.121928	chr18	243923	245900	LINE|L1|L1MEi	-	chr18	214520	245734	THOC1|ENST00000583228.5	-	214520,215428,216485,218885,223439,224083,224923,225088,226800,244301	214921,215504,216633,218969,223505,224179,224994,225403,226901,245734	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	139344535	139344579	139344547	+	High_confidence	23	23	81	2.513239	5.197051	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.913580
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	157384882	157384934	157384933	-	High_confidence	20	21	89	2.761461	5.133037	chr5	157384657	157384963	SINE|Alu|AluSx1	+	chr5	157375740	157384939	AC008676.1|ENST00000508443.1	-	157375740,157384212	157376945,157384939	0.820225
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73841844	73841877	73841876	-	High_confidence	21	22	54	1.675493	4.529317	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.870370
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	8649441	8649446	8649445	+	RAMPAGE_only	3	4	6	0.186166	2.584963	chr20	8649465	8649857	LTR|ERVL-MaLR|MSTC	+	chr20	8658620	8968360	PLCB1|ENST00000487210.5	+	8658620,8684931,8697625,8708669,8716263,8717670,8722353,8724655,8727308,8729049,8733237,8737027,8739260,8740343,8741463,8757045,8760406,8765138,8774538,8788448,8788632,8789517,8790174,8802055,8962195,8965089,8967219	8658704,8685078,8697783,8708752,8716348,8717848,8722421,8724752,8727393,8729174,8733392,8737192,8739360,8740448,8741573,8757178,8760460,8765358,8774719,8788525,8788722,8789575,8790261,8802173,8963010,8965151,8968360	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73837439	73837474	73837450	-	RAMPAGE_only	36	39	126	3.909484	3.779044	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.992063
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	119504539	119504544	119504539	-	RAMPAGE_only	3	3	8	0.248221	2.750000	chr4	119503954	119504512	LINE|L1|L1PA17	-	chr4	119494394	119627287	PDE5A|NM_033430.2	-	119494394,119501169,119502580,119504535,119505854,119507603,119511046,119519044,119520934,119525548,119538959,119542458,119552549,119553637,119560295,119562832,119565320,119567072,119596522,119606708,119627149	119498738,119501253,119502655,119504599,119505932,119507704,119511134,119519139,119521060,119525695,119539019,119542634,119552637,119553746,119560363,119562970,119565410,119567144,119596612,119607297,119627287	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	50016128	50016149	50016128	-	RAMPAGE_only	3	3	10	0.310276	2.725481	chr19	50016092	50016166	DNA|hAT-Ac|OldhAT1	-	chr19	49994862	50020647	VRK3|ENST00000599342.5	-	49994862,50000789,50007568,50009235,50015731,50016023,50020584	49994919,50000854,50007826,50009385,50015793,50016163,50020647	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	50159440	50159441	50159440	-	RAMPAGE_only	4	4	6	0.186166	2.584963	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	160199150	160199156	160199155	+	High_confidence	18	22	41	1.272134	4.308295	chr5	160199161	160199233	LINE|CR1|X7A_LINE	+	chr5	160199040	160238722	FABP6|NM_001040442.1	+	160199040,160213735,160229545,160232097,160234819,160238605	160199157,160213819,160229624,160232273,160234909,160238722	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	23705473	23705514	23705502	-	RAMPAGE_only	12	12	45	1.396244	4.880525	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	29077437	29077501	29077486	+	High_confidence	14	15	61	1.892686	5.223862	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.540984
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	42837773	42837774	42837773	-	RAMPAGE_only	8	8	9	0.279249	3.000000	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	129210255	129210300	129210255	+	High_confidence	5	5	17	0.527470	3.202820	chr7	129210177	129210332	SINE|Alu|AluJo	+	chr7	129210507	129212152	SMO|ENST00000475779.1	+	129210507,129210964,129211382,129211635,129212023	129210548,129211113,129211510,129211770,129212152	0.882353
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	209429260	209429288	209429260	+	High_confidence	2	2	17	0.527470	3.852169	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429010	209432549	MIR205HG|ENST00000366437.7	+	209429010,209429180,209430424,209432203	209429088,209429408,209430476,209432549	0.588235
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	6866552	6866553	6866552	-	High_confidence	7	7	8	0.248221	2.521641	chr2	6866502	6866992	DNA|TcMar-Tigger|Tigger8	+	chr2	6849904	6866511	CMPK2|ENST00000465619.5	-	6849904,6851449,6861183,6863463,6866409	6849973,6851683,6861385,6863578,6866511	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	144106344	144106358	144106344	+	High_confidence	4	4	11	0.341304	3.121928	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106600	144107392	MAF1|ENST00000534811.1	+	144106600,144106834	144106674,144107392	0.727273
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	174118081	174118085	174118084	-	RAMPAGE_only	4	6	11	0.341304	2.646439	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075189	174079351	OLA1|ENST00000497760.1	-	174075189,174078967	174075527,174079351	0.727273
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	107266313	107266314	107266313	+	RAMPAGE_only	10	13	13	0.403359	3.700440	chr4	107265946	107266484	LTR|ERVL|MLT2F	+	chr4	107258699	107301870	AC104663.1|ENST00000508555.1	+	107258699,107301488	107258874,107301870	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	32406668	32406732	32406668	-	High_confidence	3	3	29	0.899802	4.066109	chr22	32406332	32406620	SINE|Alu|AluSc	-	chr22	32398047	32407409	RTCB|ENST00000485373.5	-	32398047,32399602,32401746,32406661,32407312	32398100,32399759,32401903,32406761,32407409	0.758621
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	883817	883830	883829	+	RAMPAGE_only	5	6	9	0.279249	3.169925	chr12	883877	884034	SINE|Alu|AluSz6	+	chr12	753055	909033	MSTRG.4697.6	+	753055,813641,827041,830002,857160,859244,861012,862082,871264,878211,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846,908474	754324,813814,827262,830160,857249,859464,861343,862270,871348,878361,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,908034,909033	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	28233986	28234031	28234030	-	RAMPAGE_only	29	32	137	4.250788	4.748423	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.992701
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	25725123	25725124	25725123	-	RAMPAGE_only	6	6	8	0.248221	2.500000	chr3	25724854	25725755	LTR|ERVL|MER21A	+	chr3	25718943	25730550	NGLY1|ENST00000489271.5	-	25718943,25720013,25729132	25719635,25720191,25730550	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	231072232	231072233	231072232	+	RAMPAGE_only	7	7	9	0.279249	3.000000	chr2	231072200	231072280	LINE|CR1|L3	-	chr2	231066903	231075566	PSMD1|ENST00000444007.1	+	231066903,231070024,231072332,231075510	231067111,231070168,231072415,231075566	0.555556
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	11795569	11795579	11795578	+	High_confidence	30	30	53	1.644465	3.949030	chr8	11794622	11795989	LTR|ERV1|LTR12C	+	chr8	11795572	11839309	FDFT1|NM_001287743.1	+	11795572,11802758,11808793,11809666,11821749,11826023,11830243,11831517,11838387	11796011,11802931,11808891,11809850,11821878,11826215,11830420,11831670,11839309	0.981132
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	85153608	85153623	85153608	-	RAMPAGE_only	3	3	7	0.217194	2.521641	chr7	85153580	85154101	LTR|ERVL|MLT2B4	-	chr7	84995552	85121935	SEMA3D|ENST00000284136.10	-	84995552,85006801,85012781,85015058,85018251,85020232,85022390,85036888,85040672,85042170,85055716,85065423,85068190,85072961,85081516,85097804,85121740	84999865,85006941,85012846,85015216,85018293,85020321,85022613,85037033,85040742,85042285,85055859,85065552,85068284,85073081,85081579,85097965,85121935	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	77129077	77129078	77129077	+	High_confidence	1028	1246	1269	39.374084	5.651028	chr1	77128993	77129084	DNA|hAT-Charlie|MER58B	+	chr1	77129113	77129668	AC113935.1|ENST00000471722.1	+	77129113	77129668	0.800630
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	89272838	89272887	89272859	-	High_confidence	11	12	62	1.923714	4.762000	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.983871
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	77710855	77710867	77710866	+	High_confidence	3	4	11	0.341304	2.521928	chr14	77710914	77711213	LINE|L1|L1MA1	+	chr14	77710643	77717584	SLIRP|ENST00000556956.1	+	77710643,77715771,77717495	77710896,77715879,77717584	0.818182
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	39747446	39747447	39747446	-	RAMPAGE_only	4	4	6	0.186166	2.584963	chr15	39747429	39747633	LINE|L1|L1M6	-	chr15	39600030	39782830	FSIP1|ENST00000350221.3	-	39600030,39617734,39713443,39726588,39738090,39739664,39741804,39763820,39765591,39770426,39776398,39782627	39600926,39618245,39713581,39726747,39738201,39739789,39741900,39763914,39765746,39770610,39776531,39782830	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	143824540	143824567	143824566	-	RAMPAGE_only	5	5	16	0.496442	3.375000	chr3	143824344	143824714	LINE|L2|L2a	+	chr3	143265221	143848531	SLC9A9|ENST00000316549.10	-	143265221,143268874,143363483,143382059,143467036,143493652,143495334,143552361,143574087,143578584,143652254,143693191,143795000,143796825,143832018,143848147	143266929,143268980,143363563,143382114,143467190,143493764,143495448,143552450,143574193,143578723,143652360,143693307,143795077,143796903,143832221,143848531	0.687500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	109383422	109383498	109383446	-	High_confidence	15	16	71	2.202963	5.412219	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.985915
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	68906985	68907018	68906985	-	High_confidence	3	3	7	0.217194	2.807355	chr4	68905745	68907106	LTR|ERV1|HERV3-int	-	chr4	68901007	68906983	AC021146.12|ENST00000608365.1	-	68901007,68906874	68901375,68906983	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	162781349	162781399	162781398	+	RAMPAGE_only	5	5	19	0.589525	3.326360	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	19980433	19980471	19980433	-	High_confidence	9	9	34	1.054940	4.572469	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975430	19980439	PLA2G2A|NM_000300.3	-	19975430,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979690,19980439	0.941176
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	36805376	36805393	36805376	-	RAMPAGE_only	4	4	11	0.341304	3.321928	chr18	36805277	36805349	LINE|L2|L2b	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.636364
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	58123961	58123972	58123961	-	RAMPAGE_only	2	2	7	0.217194	2.584963	chr16	58123908	58124061	LINE|L2|L2b	-	chr16	58115400	58129361	CFAP20|ENST00000565880.1	-	58115400,58116040,58116871,58129031	58115450,58116152,58116951,58129361	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	101499125	101499157	101499156	+	RAMPAGE_only	5	5	15	0.465415	3.182006	chrX	101498232	101500000	LTR|ERVL|HERV16-int	+	chrX	101485474	101533459	ARMCX4|ENST00000354842.4	+	101485474,101486022,101487192,101487607,101488043,101488443,101498144,101504936,101509363,101509589,101511024,101531643,101533083	101485530,101486092,101487272,101487691,101488099,101489315,101499366,101505355,101509427,101509678,101511055,101532012,101533459	0.933333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	11507459	11507469	11507459	-	High_confidence	3	3	8	0.248221	3.000000	chr19	11507282	11507445	SINE|Alu|FRAM	-	chr19	11506074	11507709	ECSIT|ENST00000585898.1	-	11506074,11507456	11506428,11507709	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	166603869	166603892	166603869	+	High_confidence	2	2	8	0.248221	3.000000	chr1	166603841	166604182	LINE|CR1|L3	+	chr1	166603915	166625238	FMO9P|ENST00000477875.6	+	166603915,166604759,166612459,166620798,166621869,166623643,166624680	166603984,166604857,166612603,166620987,166622032,166623786,166625238	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	71417096	71417126	71417125	+	RAMPAGE_only	3	3	14	0.434387	3.235926	chr2	71411474	71417501	LINE|L1|L1HS	-	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	0.928571
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	30563947	30563982	30563947	-	High_confidence	3	3	16	0.496442	3.189898	chr7	30563654	30564076	LTR|ERVL-MaLR|MLT1C	-	chr7	30523974	30563998	GARS-DT|ENST00000580902.5	-	30523974,30550635,30563730	30524486,30550781,30563998	0.562500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	72305913	72305914	72305913	-	High_confidence	14	16	17	0.527470	3.202820	chrX	72305785	72305899	SINE|MIR|MIRc	-	chrX	72301637	72305914	CITED1|NM_001144887.1	-	72301637,72302809,72305824	72302244,72302934,72305914	0.882353
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	3873728	3873812	3873811	+	RAMPAGE_only	21	29	73	2.265018	4.647591	chr20	3873828	3874352	LINE|L1|L1ME3A	+	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.986301
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	188153250	188153257	188153250	+	High_confidence	4	4	10	0.310276	2.721928	chr3	188153223	188153377	SINE|MIR|MIR3	+	chr3	188153283	188712842	LPP|ENST00000448637.5	+	188153283,188341662,188406111,188484591,188524664,188609160,188708266	188153363,188341719,188406313,188484704,188524787,188609844,188712842	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	107091592	107091629	107091628	-	RAMPAGE_only	13	15	20	0.620553	4.221928	chr12	107091327	107092108	LINE|L2|L2a	+	chr12	106991363	107093829	CRY1|ENST00000008527.9	-	106991363,106992786,106992964,106997293,106997487,106997914,106999550,106999941,107001279,107001763,107005105,107022083,107092803	106992001,106992890,106993036,106997386,106997690,106998066,106999862,107000082,107001368,107001948,107005248,107022192,107093829	0.850000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	42403054	42403959	42403692	-	RAMPAGE_only	47	47	874	27.118164	7.648216	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	0.996568
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	2838249	2838259	2838258	+	RAMPAGE_only	6	6	18	0.558498	3.454822	chr4	2838108	2838543	LINE|L1|L1ME3B	-	chr4	2843856	2930076	ADD1|NM_176801.2	+	2843856,2875895,2881897,2884514,2894012,2894581,2898183,2898432,2899258,2904763,2907742,2908514,2914883,2926013,2926641,2928170	2844024,2876110,2882060,2884666,2894093,2894731,2898327,2898531,2899435,2905108,2907844,2908604,2915040,2926112,2926675,2930076	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	50756926	50756940	50756926	+	High_confidence	2	2	9	0.279249	2.947703	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	27445105	27445110	27445105	-	RAMPAGE_only	6	6	13	0.403359	3.022055	chr13	27444890	27445198	LINE|L1|L1MC5a	+	chr13	27435649	27440475	MTIF3|ENST00000405591.3	-	27435649,27437115,27439988	27435893,27437273,27440475	0.923077
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	217842161	217842182	217842173	-	High_confidence	9	9	30	0.930829	4.254196	chr2	217842022	217842237	LINE|L2|L2a	+	chr2	217802788	217842160	TNS1|ENST00000446688.5	-	217802788,217808074,217808602,217809822,217810247,217812367,217813214,217813684,217814911,217817689,217821739,217831454,217835090,217836014,217842051	217804603,217808107,217808671,217809991,217810319,217812445,217813307,217813816,217814998,217818759,217821938,217831547,217835166,217836211,217842160	0.700000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	39627120	39627121	39627120	-	High_confidence	21	21	24	0.744664	3.522055	chr4	39626930	39627290	LTR|ERVL-MaLR|MLT1A0	-	chr4	39547296	39627097	SMIM14|NM_001317897.1	-	39547296,39556427,39572414,39605070,39626983	39552158,39556570,39572463,39605180,39627097	0.958333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	143018261	143018292	143018270	-	High_confidence	4	4	11	0.341304	2.550341	chr8	143018268	143018403	SINE|MIR|MIR3	+	chr8	142982048	143018381	LY6E-DT|ENST00000522060.1	-	142982048,143009048,143018159	142982501,143009207,143018381	0.818182
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	8410219	8410220	8410219	-	RAMPAGE_only	7	9	9	0.279249	2.750000	chr4	8410043	8410198	DNA|hAT-Charlie|MER20	-	chr4	8374467	8415855	ACOX3|ENST00000510365.5	-	8374467,8381491,8389172,8389611,8392332,8394619,8396936,8399555,8405954,8410211,8414291,8414853,8415765	8375152,8381607,8389286,8389734,8392453,8394742,8397119,8399652,8406043,8410355,8414381,8414928,8415855	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	7566032	7566052	7566051	-	High_confidence	3	3	9	0.279249	3.000000	chr7	7565778	7566082	SINE|Alu|AluSc	+	chr7	7550103	7566065	LOC101927391|NR_110084.1	-	7550103,7552158,7555155,7564236,7565913	7551476,7552922,7555189,7564324,7566065	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	45600438	45600453	45600452	+	RAMPAGE_only	3	3	8	0.248221	2.500000	chr1	45600220	45601560	LINE|L1|L1ME1	-	chr1	45584064	45618244	MSTRG.659.18	+	45584064,45591222,45602254,45604935,45606481,45613168,45614095,45614292,45615012,45615304,45616336,45616625,45617462,45618060	45584205,45591270,45602365,45605016,45608337,45613248,45614181,45614366,45615201,45615471,45616393,45616703,45617591,45618244	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	84171777	84171789	84171777	-	High_confidence	3	3	8	0.248221	2.750000	chr10	84171609	84171986	LTR|ERV1|Harlequin-int	-	chr10	84167227	84172076	HOST2|NR_134505.1	-	84167227,84171721	84168729,84172076	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	112176365	112176366	112176365	+	High_confidence	12	12	15	0.465415	3.378783	chr11	112176309	112176508	LINE|L2|L2c	-	chr11	112176365	112218929	BCO2|NM_001256397.1	+	112176365,112179277,112193473,112193878,112194652,112199698,112200612,112202022,112213723,112214761,112216219,112217760	112176458,112179482,112193697,112193994,112194755,112199827,112200773,112202190,112213861,112214926,112216330,112218929	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	65430452	65430816	65430815	+	RAMPAGE_only	27	30	350	10.859677	5.586591	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65422803	65445540	MSTRG.3990.5	+	65422803,65423626,65423962,65426060	65423383,65423657,65425737,65445540	0.997143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	114345863	114345866	114345863	-	High_confidence	2	2	7	0.217194	2.584963	chr9	114345713	114345851	DNA|hAT-Charlie|Charlie17a	-	chr9	114336130	114346774	AKNA|ENST00000492875.1	-	114336130,114341532,114342008,114343707,114346668	114337306,114341725,114342125,114346009,114346774	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	65464088	65464219	65464088	+	RAMPAGE_only	7	12	67	2.078852	4.587226	chr12	65463992	65464279	SINE|Alu|AluY	+	chr12	65279484	65466868	MSRB3|ENST00000642404.1	+	65279484,65306862,65308528,65326825,65328525,65368997,65453727,65463154	65279517,65307026,65308655,65326934,65328603,65369026,65453825,65466868	0.970149
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	96542381	96542384	96542381	+	RAMPAGE_only	3	3	7	0.217194	2.584963	chr6	96542292	96542407	LINE|L2|L2c	-	chr6	96521807	96555276	MSTRG.20305.2	+	96521807,96523145,96524381,96525296,96526320,96528501,96534262,96536243,96537373,96538630,96549411,96549668,96551432,96551837,96552481,96553284	96521950,96523291,96524410,96525394,96526435,96528632,96534321,96536390,96537549,96548281,96549578,96549799,96551513,96551923,96552662,96555276	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	155612283	155612338	155612335	+	High_confidence	4	4	19	0.589525	3.616349	chrX	155612307	155612443	SINE|MIR|MIR3	-	chrX	155612564	155782459	SPRY3|NM_001304990.1	+	155612564,155767961,155773765	155612647,155768136,155782459	0.526316
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	122556687	122556712	122556711	-	High_confidence	10	12	18	0.558498	3.836592	chr11	122556640	122557789	LTR|ERV1|LTR12D	+	chr11	122154754	122556721	MIR100HG|ENST00000533109.6	-	122154754,122180335,122292283,122293306,122539478,122553938,122556403	122155632,122180398,122292403,122293606,122539506,122554025,122556721	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	98943525	98943578	98943575	+	High_confidence	20	27	97	3.009682	5.628379	chr9	98943488	98943594	SINE|MIR|MIRb	+	chr9	98943638	98986453	COL15A1|ENST00000471477.1	+	98943638,98944161,98985564	98944072,98944250,98986453	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	140786064	140786067	140786066	-	RAMPAGE_only	14	17	23	0.713636	3.120751	chr2	140785621	140786177	LINE|L2|L2c	+	chr2	140231422	142131701	LRP1B|ENST00000389484.7	-	140231422,140234785,140238151,140239441,140247085,140270241,140274423,140297807,140314934,140321962,140323892,140325761,140334452,140335614,140350796,140352952,140356341,140357978,140358820,140364660,140370709,140371178,140373007,140378179,140385892,140442503,140444329,140444562,140450567,140456454,140457462,140475137,140485342,140487616,140492607,140495564,140501686,140502962,140506795,140509927,140514652,140516888,140525843,140526236,140534020,140536580,140540972,140541778,140598630,140601449,140700249,140701720,140702140,140702426,140715972,140716681,140769212,140770880,140776097,140813656,140839990,140840917,140850101,140851651,140867589,140868098,140883816,140886137,140902919,140907876,140922964,140950234,140951859,140982159,140989531,140993994,141005334,141013555,141015695,141019921,141048985,141055115,141058882,141062050,141188420,141229182,141247225,141254521,141480395,141810278,142130647	140233326,140234884,140238296,140239532,140247162,140270346,140274598,140297969,140315099,140322088,140324066,140325878,140334559,140335838,140351038,140353072,140356476,140358116,140358946,140364783,140370842,140371285,140373137,140378286,140386009,140442623,140444449,140444679,140450661,140456603,140457651,140475337,140485524,140487739,140492693,140495748,140501874,140503103,140506918,140510056,140514772,140517011,140525993,140526350,140534140,140536709,140541098,140541971,140598835,140601639,140700621,140701845,140702292,140702553,140716102,140716816,140769344,140771006,140776238,140813806,140840085,140841092,140850329,140851783,140867834,140868263,140884021,140886335,140903165,140908077,140923147,140950402,140951940,140982276,140989657,140994135,141005457,141013745,141015915,141020102,141049222,141055259,141059054,141062273,141188583,141229440,141247354,141254641,141480533,141810401,142131701	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	143853174	143853237	143853174	-	RAMPAGE_only	6	8	50	1.551382	5.235902	chr7	143853075	143853314	SINE|Alu|AluJr	-	chr7	143851367	143885373	TCAF1|NM_001206941.1	-	143851367,143857099,143858823,143860207,143861094,143862415,143862801,143885209	143854142,143857350,143859161,143860447,143861308,143862513,143863796,143885373	0.960000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	128185561	128185590	128185561	-	RAMPAGE_only	3	3	16	0.496442	3.452820	chr9	128185400	128185541	SINE|MIR|MIR3	-	chr9	128177587	128180798	CIZ1|ENST00000476239.5	-	128177587,128178368,128178708,128179243,128180414,128180720	128177763,128178490,128178904,128179415,128180523,128180798	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	22717935	22717938	22717935	-	High_confidence	29	29	58	1.799604	5.418157	chr6	22717913	22718256	DNA|hAT-Ac|OldhAT1	-	chr6	22654159	22717924	LOC105374972|NR_134613.1	-	22654159,22717720	22654704,22717924	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	45825369	45825406	45825369	-	RAMPAGE_only	3	3	9	0.279249	3.169925	chr20	45825287	45825591	SINE|Alu|AluSx	-	chr20	45823213	45827314	TNNC2|NM_003279.2	-	45823213,45823990,45824291,45824494,45824782,45827245	45823379,45824127,45824406,45824638,45824834,45827314	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	111864808	111864857	111864808	-	RAMPAGE_only	2	2	16	0.496442	3.640224	chr2	111864463	111864762	SINE|Alu|AluSx1	-	chr2	111767636	111884164	ANAPC1|NM_022662.3	-	111767636,111772340,111776858,111778674,111780298,111782368,111783896,111784322,111785359,111788233,111792361,111794077,111794232,111794817,111800796,111802427,111803447,111803704,111805801,111808946,111815369,111818839,111821238,111822421,111824965,111825130,111825776,111831285,111833219,111834603,111838437,111843411,111847137,111847724,111850775,111856613,111856795,111858305,111862388,111863674,111864805,111868022,111872629,111873307,111873612,111878809,111880612,111883941	111769406,111772475,111777057,111778770,111780385,111782507,111783964,111784400,111785477,111788320,111792555,111794131,111794323,111794894,111800871,111802506,111803530,111803839,111805893,111809181,111815641,111818958,111821453,111822600,111825036,111825167,111825855,111831434,111833311,111834872,111838512,111843599,111847198,111847865,111850910,111856679,111856886,111858401,111862598,111863895,111864951,111868096,111872712,111873408,111873664,111878971,111880849,111884164	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	158660263	158660264	158660263	+	High_confidence	6	6	6	0.186166	2.584963	chr3	158660248	158660547	SINE|Alu|AluSq2	-	chr3	158660263	158665407	GFM1|ENST00000490261.1	+	158660263,158660873,158662627,158665336	158660624,158660975,158662684,158665407	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	50924027	50924038	50924027	+	High_confidence	4	4	9	0.279249	2.503258	chr12	50923859	50924420	LTR|ERV1|MER4B	-	chr12	50924004	50929955	METTL7A|ENST00000550502.1	+	50924004,50925036,50929913	50924080,50925536,50929955	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	1721700	1721705	1721700	-	High_confidence	4	4	12	0.372332	3.022055	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	46113666	46113691	46113690	+	High_confidence	4	4	14	0.434387	2.896292	chr21	46113375	46113722	SINE|Alu|AluJr	-	chr21	46113616	46117521	COL6A2|ENST00000485591.1	+	46113616,46115871,46116008,46116376,46116650,46116769,46117399	46114073,46115925,46116053,46116403,46116677,46116814,46117521	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	139364689	139364717	139364716	+	RAMPAGE_only	3	3	13	0.403359	3.546594	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342441	139369720	PAIP2|ENST00000394795.6	+	139342441,139363758,139364563,139368732	139343406,139363922,139364743,139369720	0.923077
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	92939320	92939334	92939333	+	High_confidence	3	5	9	0.279249	2.947703	chr15	92939359	92939489	DNA|hAT-Charlie|MER5A	+	chr15	92939653	92949228	CHD2|ENST00000637613.1	+	92939653,92941821,92942842,92944414,92945820,92946037,92946247,92948951	92939718,92941955,92943068,92944515,92945865,92946082,92946340,92949228	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	72627661	72627662	72627661	-	High_confidence	12	12	14	0.434387	3.378783	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72479750	72627686	LINC01572|ENST00000563770.5	-	72479750,72491903,72523331,72540577,72555264,72570434,72617182,72627534	72479790,72491966,72523415,72540611,72555326,72570515,72617234,72627686	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	77175254	77175303	77175302	+	High_confidence	10	10	38	1.179051	4.405765	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.921053
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	3215230	3215254	3215230	+	High_confidence	2	2	18	0.558498	3.572469	chr12	3215140	3215247	SINE|MIR|MIRc	+	chr12	3215250	3281281	TSPAN9|ENST00000431374.6	+	3215250,3278420,3278991,3280381,3281197	3215355,3278612,3279066,3280483,3281281	0.555556
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	34998862	34998895	34998894	+	RAMPAGE_only	15	17	53	1.644465	5.013413	chr6	34998835	34999233	LTR|ERV1|HERVE_a-int	+	chr6	34889264	35088963	ANKS1A|ENST00000649117.1	+	34889264,34967238,34970009,34972580,34981689,34982751,34983112,34983323,34985081,34989223,34994301,35017472,35054098,35060146,35078557,35079515,35079820,35080993,35082690,35083154,35083416,35084120,35085765,35086269,35086951	34889599,34967319,34970166,34972643,34981986,34982827,34983214,34983425,34985278,34989316,34994422,35018059,35054165,35060253,35078656,35079668,35079928,35081158,35082816,35083226,35083503,35084258,35085936,35086368,35088963	0.735849
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	32402135	32402136	32402135	+	RAMPAGE_only	9	9	9	0.279249	2.947703	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32428387	32545455	MSTRG.6735.6	+	32428387,32433459,32535553,32545229	32428565,32433817,32535805,32545455	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	101499186	101499218	101499217	+	RAMPAGE_only	6	6	15	0.465415	3.378783	chrX	101498232	101500000	LTR|ERVL|HERV16-int	+	chrX	101485474	101533459	ARMCX4|ENST00000354842.4	+	101485474,101486022,101487192,101487607,101488043,101488443,101498144,101504936,101509363,101509589,101511024,101531643,101533083	101485530,101486092,101487272,101487691,101488099,101489315,101499366,101505355,101509427,101509678,101511055,101532012,101533459	0.733333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	131510310	131510330	131510329	-	RAMPAGE_only	3	3	9	0.279249	2.503258	chr7	131510213	131510511	SINE|Alu|AluSx3	+	chr7	131500261	131556563	PODXL|ENST00000446198.5	-	131500261,131505867,131506259,131506578,131508950,131510827,131556259	131504508,131506035,131506321,131506726,131509585,131511433,131556563	0.555556
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100829513	100829975	100829513	+	High_confidence	48	48	798	24.760062	7.383145	chr14	100829465	100829630	SINE|MIR|MIRb	+	chr14	100829651	100860773	MEG3|ENST00000523671.7	+	100829651,100834631,100836166,100845457,100857338,100860690	100831534,100834751,100836300,100845533,100857388,100860773	0.964912
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	6787003	6787004	6787003	+	RAMPAGE_only	11	11	12	0.372332	2.913977	chr12	6786967	6787079	DNA|hAT-Charlie|MER102c	-	chr12	6789471	6820808	CD4|ENST00000011653.8	+	6789471,6800071,6800306,6814141,6814758,6816055,6817129,6818420,6818846,6819298	6789662,6800187,6800471,6814300,6814992,6816403,6817330,6818542,6818914,6820808	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	10362410	10362425	10362424	+	RAMPAGE_only	17	17	30	0.930829	4.481728	chr12	10362140	10362659	LTR|ERV1|LTR10C	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.700000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	102261188	102261201	102261200	-	High_confidence	5	7	16	0.496442	2.549255	chr8	102261109	102261291	DNA|hAT-Ac|OldhAT1	+	chr8	102253945	102261986	UBR5|ENST00000517465.1	-	102253945,102257631,102258315,102258984,102261145,102261914	102254514,102257717,102258424,102259129,102261259,102261986	0.937500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	47486752	47486784	47486752	-	High_confidence	2	2	11	0.341304	3.121928	chr11	47486415	47486707	SINE|Alu|AluSz6	-	chr11	47477295	47486799	CELF1|ENST00000422993.2	-	47477295,47478876,47482694,47484388,47486749	47477425,47478952,47482856,47484523,47486799	0.818182
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	166603680	166603681	166603680	+	High_confidence	5	5	8	0.248221	2.807355	chr1	166603525	166603837	SINE|Alu|AluSz	+	chr1	166603915	166625238	FMO9P|ENST00000477875.6	+	166603915,166604759,166612459,166620798,166621869,166623643,166624680	166603984,166604857,166612603,166620987,166622032,166623786,166625238	0.625000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	48492783	48492791	48492783	-	High_confidence	14	15	32	0.992885	4.502583	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.781250
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	167922492	167922521	167922520	+	RAMPAGE_only	2	2	6	0.186166	2.584963	chr6	167922513	167922630	LINE|L2|L2c	-	chr6	167913540	167965029	AFDN|ENST00000511637.5	+	167913540,167914643,167915167,167917088,167918734,167922855,167925004,167943128,167943401,167943940,167946706,167947852,167948292,167951185,167962432	167914313,167914738,167915433,167917232,167918933,167922959,167925091,167943194,167943475,167944059,167946901,167947944,167948478,167952187,167965029	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	74969671	74969741	74969714	+	RAMPAGE_only	4	4	21	0.651581	3.892407	chr10	74969693	74969726	LINE|L2|L2a	-	chr10	74842619	75022125	KAT6B|ENST00000648369.1	+	74842619,74959969,74969659,74970019,74972506,74975398,74977315,74979223,74981786,74985079,75020581,75021125,75021880	74843478,74960078,74969775,74970101,74972639,74976330,74977437,74979339,74981928,74985241,75020813,75021285,75022125	0.904762
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	122274041	122274073	122274041	-	RAMPAGE_only	3	3	15	0.465415	3.378783	chr12	122273741	122274010	SINE|Alu|AluSz	-	chr12	122272460	122275823	CLIP1|ENST00000501271.2	-	122272460,122274037	122273100,122275823	0.933333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	113117907	113117971	113117970	+	High_confidence	53	74	288	8.935962	6.015610	chr2	113117968	113118039	LINE|CR1|L3b	-	chr2	113117896	113134016	IL1RN|ENST00000259206.9	+	113117896,113120065,113127688,113129575,113131044,113132655	113118028,113120128,113127740,113129664,113131157,113134016	0.829861
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	74000284	74000300	74000298	+	RAMPAGE_only	5	8	16	0.496442	3.750000	chrX	74000010	74000535	LINE|L1|L1MA7	+	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.812500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	132935072	132935088	132935072	-	High_confidence	4	4	11	0.341304	3.121928	chr9	132935029	132935100	SINE|tRNA|LFSINE_Vert	+	chr9	132910260	132935090	TSC1|ENST00000647078.1	-	132910260,132911001,132911409,132912281,132921362,132921818,132923347,132925586,132927200,132928766,132935032	132910689,132911113,132911568,132912457,132921436,132921973,132923492,132925739,132927304,132928952,132935090	0.909091
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	5699506	5699523	5699522	+	High_confidence	4	4	12	0.372332	3.459432	chr10	5699528	5699730	LINE|L1|L1M7	+	chr10	5699492	5714207	FAM208B|ENST00000463468.5	+	5699492,5712393,5712822,5714134	5699737,5712539,5712918,5714207	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	62061185	62061196	62061185	+	RAMPAGE_only	2	2	10	0.310276	3.321928	chr10	62061063	62061195	LINE|L2|L2a	-	chr10	61901630	62083096	MSTRG.2721.2	+	61901630,61902158,61940182,62000090,62050887,62055810	61901730,61902413,61940408,62000321,62055723,62083096	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	91953635	91953643	91953642	+	RAMPAGE_only	4	4	8	0.248221	3.000000	chr10	91953570	91953644	LINE|L1|L1MC	+	chr10	91935151	92030321	BTAF1|ENST00000544642.2	+	91935151,91935651,91939951,91942421,91951402,91953736,91956527,91957224,91959064,91959784,91959977,91962537,91964076,91966636,91980453,91981642,91982082,91982586,91984200,91989153,91992118,91993693,91994534,91996368,91997602,92008122,92008828,92009040,92011072,92011285,92013666,92013898,92016339,92018782,92024755,92026591,92027129,92028789	91935160,91935780,91940066,91942568,91951566,91953873,91956657,91957293,91959154,91959880,91960154,91962678,91964201,91966757,91980558,91981792,91982225,91982761,91984404,91989580,91992309,91993847,91994644,91996570,91997751,92008275,92008950,92009208,92011150,92011415,92013808,92014029,92016465,92018935,92024967,92026751,92027300,92030321	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	27286217	27286226	27286217	+	High_confidence	5	5	9	0.279249	2.500000	chr16	27285896	27286308	LTR|ERVL-MaLR|MLT1G	-	chr16	27286656	27290492	FLJ21408|ENST00000566535.1	+	27286656,27290244	27286744,27290492	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	44439852	44439911	44439852	-	High_confidence	3	4	24	0.744664	3.834963	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421126	44439917	C3orf86|ENST00000636468.1	-	44421126,44439796	44421813,44439917	0.625000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	20674497	20674498	20674497	+	High_confidence	8	8	10	0.310276	2.646439	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	143043181	143043274	143043267	+	RAMPAGE_only	25	25	266	8.253354	5.859085	chr3	143043314	143043694	LINE|L2|L2b	+	chr3	143001622	143057653	U2SURP|ENST00000463563.6	+	143001622,143010814,143012221,143014310,143016256,143016841,143019968,143020598,143021349,143021472,143022496,143022852,143023974,143024483,143027148,143028339,143028482,143032783,143033270,143034887,143035981,143037178,143038107,143038893,143043116,143050938,143053675,143054942,143056311	143001673,143010859,143012353,143014409,143016371,143016975,143020036,143020693,143021385,143021555,143022662,143023064,143024018,143024548,143027253,143028406,143028646,143032946,143033350,143034975,143036104,143037335,143038203,143038960,143043276,143051049,143053794,143055119,143057653	0.988722
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	35449689	35449715	35449700	+	RAMPAGE_only	5	5	16	0.496442	3.875000	chr10	35448694	35450287	LINE|L2|L2a	-	chr10	35525960	35566128	CCNY|ENST00000465416.5	+	35525960,35530123,35553018,35566022	35525999,35530243,35553185,35566128	0.562500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	21544656	21544692	21544670	-	High_confidence	18	23	48	1.489327	5.095176	chr4	21544311	21544682	LTR|ERVL-MaLR|MLT1E2	-	chr4	20728615	21544656	KCNIP4|NM_001035004.1	-	20728615,20732005,20732680,20734627,20749661,20758820,20850542,21544389	20730129,20732068,20732785,20734735,20749732,20758890,20850667,21544656	0.520833
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	75280672	75280682	75280681	+	RAMPAGE_only	5	5	11	0.341304	2.913977	chr18	75280540	75280747	SINE|MIR|MIRb	+	chr18	75282863	75289943	TSHZ1|ENST00000584217.1	+	75282863	75289943	0.909091
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	33194680	33194715	33194708	-	High_confidence	6	6	22	0.682608	3.784184	chr15	33194605	33194709	SINE|Alu|AluJb	+	chr15	33149783	33194696	FMN1|ENST00000320930.7	-	33149783,33153047,33180197,33193908,33194577	33151379,33155045,33180262,33194060,33194696	0.727273
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	102822456	102822461	102822458	-	RAMPAGE_only	11	15	30	0.930829	4.487123	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	2759938	2760018	2759971	+	High_confidence	14	15	87	2.699405	4.504888	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.896552
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	80744224	80744269	80744265	-	RAMPAGE_only	8	10	38	1.179051	4.125006	chr7	80744204	80744304	SINE|MIR|MIR	-	chr7	80742537	80818409	MSTRG.21367.1	-	80742537,80748897,80751268,80758330,80761615,80765154,80789305,80798091,80800756,80802664,80804105,80805638,80810610	80745307,80749028,80751336,80758488,80761657,80765243,80789528,80798236,80800826,80802779,80804248,80805758,80818409	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	108451086	108451102	108451086	+	RAMPAGE_only	3	3	11	0.341304	3.321928	chr2	108451073	108451151	LINE|RTE-BovB|MamRTE1	-	chr2	108449883	108472899	GCC2|ENST00000409896.1	+	108449883,108451027,108452398,108468979,108469650,108472826	108449994,108451112,108452466,108469084,108472116,108472899	0.818182
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100935548	100935573	100935548	+	RAMPAGE_only	2	2	10	0.310276	2.725481	chr14	100934354	100935764	LINE|L1|L1M2	-	chr14	100931878	100998541	MSTRG.7387.73	+	100931878,100937402,100938879,100940364,100942761,100944808,100947033,100948977,100949514,100950401,100951431,100953963,100954921,100955884,100958261,100960060,100961026,100963964,100964352,100966644,100967638,100968647,100969458,100972261,100974125,100975410,100980576,100982503,100983460,100984347,100985654,100986618,100988708,100989693,100991490,100993834,100996885,100997486	100935881,100937488,100938956,100940450,100942838,100944872,100947116,100949039,100949596,100950472,100951494,100954046,100955006,100955949,100958343,100960219,100961132,100964000,100964439,100966731,100967786,100968724,100969545,100972346,100974203,100975496,100980663,100982585,100983542,100984434,100985740,100987630,100988790,100989780,100991565,100993907,100996916,100998541	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	67183376	67183377	67183376	-	High_confidence	6	6	6	0.186166	2.584963	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	28090231	28090232	28090231	+	High_confidence	12	12	14	0.434387	3.700440	chr8	28089941	28090482	LTR|ERVL|LTR66	+	chr8	28090230	28191156	ELP3|ENST00000521015.5	+	28090230,28097218,28099827,28106712,28107912,28110369,28113018,28129501,28132277,28137697,28155941,28158567,28160228,28161996,28189648	28090332,28097318,28099966,28106783,28107976,28110438,28113173,28129663,28132404,28137891,28156032,28158633,28160456,28162078,28191156	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	100910262	100910312	100910262	+	RAMPAGE_only	2	3	20	0.620553	3.932138	chr14	100910200	100910300	SINE|MIR|MIRc	+	chr14	100906043	100947076	MSTRG.7387.63	+	100906043,100906935,100931913,100938879,100940364,100942761,100944808,100947033	100906163,100931545,100937488,100938956,100940450,100942838,100944925,100947076	0.950000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	30354679	30354681	30354680	-	High_confidence	3	6	8	0.248221	2.521641	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	130340353	130340354	130340353	+	High_confidence	7	7	7	0.217194	2.521641	chr12	130340312	130340636	DNA|hAT-Charlie|MER1B	-	chr12	130339498	130346405	PIWIL1|ENST00000535956.5	+	130339498,130342579,130342989,130345752,130346369	130339700,130342669,130343101,130345878,130346405	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	7642250	7642259	7642250	+	High_confidence	3	3	6	0.186166	2.584963	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7641829	7643210	STXBP2|ENST00000594221.5	+	7641829,7642033,7642202,7642428,7642982,7643164	7641853,7642118,7642333,7642823,7643048,7643210	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	31121301	31121338	31121337	-	RAMPAGE_only	27	28	71	2.202963	4.590986	chr12	31121135	31121738	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.957746
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	12572746	12572806	12572759	-	RAMPAGE_only	4	6	28	0.868774	4.056021	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.928571
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	166957430	166957448	166957430	-	High_confidence	5	6	9	0.279249	2.725481	chr6	166957416	166957859	LINE|L2|L2a	+	chr6	166929539	166957184	RNASET2|ENST00000476238.6	-	166929539,166931043,166934090,166938894,166943018,166946681,166948569,166952487,166956096,166957125	166929791,166931118,166934136,166939008,166943089,166946739,166948625,166952548,166956191,166957184	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	87524562	87524610	87524572	-	RAMPAGE_only	4	5	16	0.496442	3.577820	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87473417	87529092	SPARCL1|ENST00000503414.5	-	87473417,87479429,87480371,87482423,87490272,87490759,87491617,87493581,87494980,87497130,87499520,87529044	87473803,87479578,87480520,87482560,87490393,87490878,87491690,87494598,87495127,87497239,87499585,87529092	0.625000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	75626304	75626305	75626304	-	High_confidence	10	10	10	0.310276	2.921928	chr15	75626242	75626393	LINE|L2|L2b	+	chr15	75598082	75626378	SNUPN|NM_001042588.1	-	75598082,75601137,75605149,75607215,75609557,75609889,75617407,75620893,75626238	75598681,75601218,75605227,75607313,75609651,75609994,75617552,75621056,75626378	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	174874417	174874441	174874418	+	High_confidence	34	41	139	4.312843	6.309710	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.532374
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	80634644	80634741	80634735	-	RAMPAGE_only	7	7	45	1.396244	3.896627	chr8	80634474	80634795	DNA|hAT-Charlie|MER102b	+	chr8	80628450	80874781	ZNF704|NM_001033723.2	-	80628450,80643034,80659584,80664814,80670502,80687225,80693003,80821373,80874570	80641477,80643129,80659689,80665082,80670603,80687458,80693107,80821615,80874781	0.955556
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	166185025	166185037	166185031	+	RAMPAGE_only	18	22	57	1.768576	5.095314	chr2	166184665	166185205	LINE|L2|L2a	-	chr2	166149180	166294588	AC010127.1|ENST00000630020.2	+	166149180,166171386,166199638,166248194,166249342,166251833,166277087,166294564	166149572,166171558,166199818,166248276,166249384,166251912,166277247,166294588	0.596491
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	15811003	15811004	15811003	+	RAMPAGE_only	6	6	6	0.186166	2.584963	chr21	15810832	15811013	SINE|MIR|MIR	-	chr21	15730024	15880072	USP25|NM_013396.4	+	15730024,15762890,15765996,15777903,15791501,15799756,15805120,15808808,15811136,15818697,15824038,15824965,15826203,15826976,15830530,15831400,15833347,15842397,15864267,15866265,15870067,15874402,15877795,15878302	15730438,15762968,15766141,15778027,15791664,15799843,15805258,15808885,15811210,15818846,15824166,15825061,15826365,15827203,15830601,15831629,15833548,15842540,15864446,15866344,15870147,15874526,15877991,15880072	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	4143196	4143215	4143199	+	High_confidence	72	74	188	5.833198	5.325105	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.984043
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	201116004	201116019	201116007	+	High_confidence	6	6	16	0.496442	3.323231	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.937500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	3536845	3536889	3536872	-	High_confidence	9	9	68	2.109880	5.330504	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.823529
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	19093534	19093590	19093568	-	High_confidence	5	7	23	0.713636	3.914866	chr1	19093526	19093673	LINE|L2|L2	+	chr1	19092732	19093440	UBR4|ENST00000492606.1	-	19092732,19093312	19092918,19093440	0.956522
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	202135838	202135843	202135838	+	High_confidence	18	21	38	1.179051	4.496899	chr2	202135840	202135976	SINE|MIR|MIRc	+	chr2	202135715	202197862	KIAA2012|ENST00000469462.1	+	202135715,202154672,202165283,202184752,202186932,202188151,202190173,202193300,202194189,202196799	202138508,202154810,202165356,202184843,202187098,202188266,202190493,202193503,202194362,202197862	0.921053
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	31119005	31119036	31119005	-	High_confidence	2	2	12	0.372332	3.095795	chr12	31118893	31119042	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	109953850	109953856	109953855	-	RAMPAGE_only	3	3	7	0.217194	2.521641	chr10	109953667	109954091	LTR|ERVL-MaLR|MLT1J2	-	chr10	109946118	109957911	ADD3-AS1|ENST00000631276.2	-	109946118,109947195,109951843	109946295,109947276,109957911	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	45833251	45833252	45833251	-	High_confidence	48	48	48	1.489327	4.290401	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	153967486	153967517	153967486	+	High_confidence	6	9	24	0.744664	3.914866	chr1	153967504	153967681	SINE|Alu|AluJb	+	chr1	153967533	153968968	CREB3L4|ENST00000477617.5	+	153967533,153968521,153968929	153967884,153968699,153968968	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	36481334	36481346	36481345	-	High_confidence	5	5	10	0.310276	2.947703	chr22	36481119	36481308	SINE|MIR|MIRb	-	chr22	36467045	36481640	TXN2|NM_012473.3	-	36467045,36476732,36480574,36481563	36467917,36476856,36480837,36481640	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	46087042	46087043	46087042	-	High_confidence	8	8	8	0.248221	2.750000	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	56785867	56785876	56785867	-	High_confidence	51	52	82	2.544267	4.874697	chr6	56779724	56785868	LINE|L1|L1PA3	-	chr6	56670674	56785879	DST|ENST00000522538.5	-	56670674,56699652,56701887,56704279,56735227,56785770	56670807,56699745,56701965,56704369,56735289,56785879	0.878049
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	153119468	153119469	153119468	-	RAMPAGE_only	7	7	7	0.217194	2.807355	chr1	153119372	153120057	LTR|ERV1|LTR76	-	chr1	153112113	153113515	SPRR2F|ENST00000468739.1	-	153112113,153113473	153112752,153113515	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	75879157	75879162	75879161	+	RAMPAGE_only	6	7	12	0.372332	2.625815	chr15	75879209	75879584	LINE|L1|L1ME3B	+	chr15	75868950	75899577	UBE2Q2|ENST00000567921.1	+	75868950,75873427,75883365,75896994,75899426	75869010,75873568,75883424,75897061,75899577	0.916667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	166603587	166603621	166603603	+	High_confidence	10	10	46	1.427272	5.115847	chr1	166603525	166603837	SINE|Alu|AluSz	+	chr1	166603915	166625238	FMO9P|ENST00000477875.6	+	166603915,166604759,166612459,166620798,166621869,166623643,166624680	166603984,166604857,166612603,166620987,166622032,166623786,166625238	0.652174
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	21818157	21818171	21818170	-	RAMPAGE_only	3	3	8	0.248221	2.807355	chr12	21817882	21818136	LINE|L1|L1PA8A	-	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	28952140	28952153	28952152	+	RAMPAGE_only	3	3	7	0.217194	2.807355	chr16	28952153	28952214	DNA|hAT-Ac|OldhAT1	+	chr16	28950996	28966465	NFATC2IP|NM_032815.3	+	28950996,28952131,28954564,28955977,28956150,28958716,28958990,28963704	28951398,28952204,28954682,28956058,28956337,28958861,28959100,28966465	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	37929513	37929523	37929522	+	High_confidence	3	3	7	0.217194	2.807355	chr2	37929546	37929613	LINE|L1|HAL1M8	+	chr2	37928758	38017744	RMDN2|ENST00000406384.5	+	37928758,37929261,37974039,37975211,37981282,37989540,37991219,37997415,38003990,38004135,38017185	37928936,37929729,37974214,37975314,37981343,37989616,37991297,37997514,38004044,38004216,38017744	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	155679929	155679930	155679929	-	High_confidence	7	7	7	0.217194	2.521641	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	31233173	31233212	31233211	+	High_confidence	4	5	21	0.651581	3.689704	chr17	31233237	31233291	LINE|L2|L2a	+	chr17	31233029	31261794	NF1|ENST00000479614.1	+	31233029,31235610,31235917,31248983,31257686,31258343,31259031,31260368,31261710	31233213,31235772,31236021,31249119,31257726,31258502,31259129,31260515,31261794	0.952381
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	134467260	134467288	134467264	+	RAMPAGE_only	11	11	23	0.713636	4.055958	chr11	134467217	134467788	LTR|ERVL|LTR66	+	chr11	134466184	134487915	AP004608.1|ENST00000528482.6	+	134466184,134467864,134480844,134482626,134485961	134467615,134467987,134480911,134482730,134487915	0.782609
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	73994935	73994948	73994947	+	RAMPAGE_only	2	4	7	0.217194	2.584963	chrX	73994826	73995038	SINE|Alu|AluSp	-	chrX	73944350	74004551	JPX|ENST00000602985.5	+	73944350,73944583,74004269	73944465,73944662,74004551	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	44249282	44249303	44249290	+	RAMPAGE_only	8	9	23	0.713636	3.464235	chr6	44249074	44249352	SINE|Alu|AluJb	+	chr6	44247865	44253883	HSP90AB1|ENST00000371554.2	+	44247865,44248629,44249376,44249674,44250020,44250290,44251047,44251417,44251736,44251998,44253044,44253488	44248079,44248776,44249583,44249834,44250154,44250599,44251213,44251608,44251884,44252267,44253378,44253883	0.869565
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	62600186	62600256	62600255	-	High_confidence	3	3	12	0.372332	3.084963	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	21842314	21842332	21842314	-	RAMPAGE_only	2	2	9	0.279249	2.500000	chr12	21841951	21842271	DNA|TcMar-Tigger|MER2B	-	chr12	21805173	21910978	ABCC9|ENST00000544039.5	-	21805173,21805997,21807345,21809851,21812048,21814643,21815762,21817186,21818149,21828957,21838077,21842313,21844482,21844766,21845602,21848149,21852096,21852367,21859585,21860970,21862952,21864438,21872624,21875653,21887825,21894031,21895274,21906125,21908076,21910156,21910825	21805311,21806060,21807479,21809955,21812157,21814722,21815893,21817307,21818251,21829060,21838170,21842471,21844552,21844915,21845832,21848246,21852222,21852505,21859666,21861055,21863054,21864477,21872730,21875726,21887934,21894174,21895315,21906288,21908211,21910312,21910978	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	125937006	125937051	125937050	-	High_confidence	3	3	14	0.434387	2.777363	chr3	125936638	125942696	LINE|L1|L1PA2	+	chr3	125929274	125937044	ALG1L|NM_001195223.1	-	125929274,125930556,125931637,125932649,125933574,125934435,125936897	125929567,125930629,125931752,125932709,125933696,125934546,125937044	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	24887184	24887185	24887184	-	RAMPAGE_only	7	10	11	0.341304	2.521928	chr2	24887010	24887378	LTR|ERVL-MaLR|THE1C	-	chr2	24841324	24878027	ADCY3|ENST00000433852.1	-	24841324,24841555,24842253,24872569,24877921	24841386,24841667,24842384,24872719,24878027	0.909091
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	195688575	195688587	195688575	+	High_confidence	2	2	8	0.248221	2.521641	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688520	195708807	MUC20-OT1|ENST00000630417.2	+	195688520,195689338,195699029,195708133,195708746	195688797,195689438,195699207,195708435,195708807	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	127531649	127531660	127531649	-	RAMPAGE_only	6	6	12	0.372332	2.855389	chr9	127531518	127531631	SINE|MIR|MIR3	-	chr9	127524805	127527221	FAM129B|ENST00000476091.1	-	127524805,127527193	127525163,127527221	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	134801787	134801788	134801787	+	RAMPAGE_only	8	9	12	0.372332	2.855389	chr9	134801512	134801813	SINE|Alu|AluSg	+	chr9	134641804	134844840	COL5A1|ENST00000618395.4	+	134641804,134690911,134699908,134701170,134727265,134728669,134730235,134731495,134732070,134738473,134738745,134750541,134750789,134752588,134753849,134754272,134756764,134758242,134761924,134763692,134765680,134766453,134766999,134767309,134768409,134772789,134774858,134780101,134782666,134784988,134785994,134789154,134795081,134795261,134796373,134796847,134798407,134801953,134802887,134804974,134805160,134806188,134809182,134810254,134811338,134811491,134812448,134812604,134813982,134814796,134815575,134815934,134817025,134817777,134818655,134818847,134818999,134820115,134822096,134822997,134823415,134824599,134825791,134830107,134834970,134842156	134642296,134691079,134700122,134701333,134727397,134728807,134730475,134731663,134732127,134738515,134738808,134750616,134750882,134752645,134753903,134754326,134756818,134758296,134761978,134763737,134765734,134766498,134767053,134767354,134768463,134772834,134774912,134780146,134782720,134785096,134786048,134789208,134795126,134795315,134796418,134796901,134798461,134802007,134802995,134805064,134805214,134806296,134809290,134810308,134811392,134811599,134812502,134812712,134814036,134814904,134815629,134815988,134817079,134817831,134818763,134818901,134819053,134820223,134822150,134823033,134823469,134824855,134825904,134830176,134835204,134844840	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	69425679	69425709	69425689	+	High_confidence	5	5	34	1.054940	3.844385	chr11	69425637	69426207	LINE|L1|L1MC2	+	chr11	69425689	69429621	AP000439.3|ENST00000545202.1	+	69425689,69427362	69425806,69429621	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	21020038	21020048	21020047	-	High_confidence	4	4	12	0.372332	2.913977	chr14	21020013	21020322	SINE|Alu|AluSg4	+	chr14	21017994	21020109	NDRG2|ENST00000557416.5	-	21017994,21018203,21018456,21018626,21018762,21019115,21019638,21019919	21018038,21018239,21018504,21018663,21018814,21019160,21019742,21020109	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	67231056	67231080	67231079	-	RAMPAGE_only	3	3	6	0.186166	2.584963	chr10	67230665	67236674	LINE|L1|L1PA3	+	chr10	67176900	67219873	CTNNA3|ENST00000545309.2	-	67176900,67180316,67219606	67176984,67180520,67219873	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	130497232	130497233	130497232	+	High_confidence	12	14	15	0.465415	3.521641	chr7	130497281	130497565	SINE|Alu|AluSx	+	chr7	130497676	130498801	MEST|ENST00000475188.1	+	130497676,130498138,130498418	130498013,130498275,130498801	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	81309841	81309860	81309841	-	High_confidence	3	3	9	0.279249	2.947703	chr15	81309749	81309917	SINE|MIR|MIRb	-	chr15	81303214	81309391	AC103858.1|ENST00000607019.1	-	81303214,81309330	81303629,81309391	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	120168619	120168630	120168629	-	High_confidence	3	3	8	0.248221	2.500000	chr12	120168618	120168722	LINE|L2|L2b	+	chr12	120164670	120168414	GCN1|ENST00000551549.1	-	120164670,120168207	120164721,120168414	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	211366383	211366408	211366383	+	RAMPAGE_only	2	2	10	0.310276	3.169925	chr1	211366365	211366790	LINE|L2|L2c	-	chr1	211326836	211374785	MSTRG.2068.5	+	211326836,211353238,211354409,211356366,211359911,211360701,211361087,211365375,211371301,211372127	211326889,211353457,211354467,211356468,211360076,211360779,211361162,211369592,211371470,211374785	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	18794054	18794078	18794077	+	High_confidence	20	20	66	2.047825	5.395370	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.984848
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	70257706	70257707	70257706	+	High_confidence	5	5	7	0.217194	2.584963	chr2	70257600	70257904	SINE|Alu|AluYm1	-	chr2	70257725	70275666	PCYOX1|ENST00000414812.5	+	70257725,70259359,70261211,70274958,70275513	70257935,70259566,70261386,70275170,70275666	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	60970179	60970198	60970197	-	RAMPAGE_only	2	2	7	0.217194	2.584963	chr15	60969809	60970207	LTR|ERVL-MaLR|MLT1B	+	chr15	60954299	61098195	MSTRG.7952.1	-	60954299,61007775,61094355	61007700,61016035,61098195	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	89888220	89888221	89888220	+	RAMPAGE_only	12	12	12	0.372332	3.084963	chr10	89888002	89888814	LTR|ERV1|LTR8B	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.583333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	70401422	70401478	70401467	+	RAMPAGE_only	12	14	75	2.327074	5.271749	chr5	70400852	70402000	LTR|ERV1|LTR12E	+	chr5	70415351	70447526	GTF2H2B|ENST00000508065.7	+	70415351,70420248,70421279,70421734,70422112,70422872,70423298,70427584,70433869,70434178,70434914,70437530,70440755,70441415,70445482,70447233	70415389,70420337,70421357,70421771,70422199,70422923,70423353,70427690,70433960,70434266,70435022,70437594,70440859,70441518,70445522,70447526	0.920000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	39026127	39026131	39026130	+	High_confidence	10	14	25	0.775691	3.833270	chr1	39025942	39026230	SINE|Alu|AluJb	-	chr1	39026294	39034636	NDUFS5|NM_001184979.1	+	39026294,39028722,39034391	39026398,39028940,39034636	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	85330237	85330287	85330237	-	RAMPAGE_only	32	36	128	3.971539	6.423532	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.609375
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	31997378	31997379	31997378	+	High_confidence	41	41	41	1.272134	3.728993	chr4	31996206	31997789	LTR|ERV1|LTR12C	+	chr4	31997378	32155406	LOC102723828|NR_125936.1	+	31997378,32146052,32155313	31997822,32146267,32155406	0.975610
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	158172987	158173025	158173024	-	High_confidence	164	170	262	8.129244	6.375549	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.862595
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	53220877	53220898	53220877	-	High_confidence	1	1	7	0.217194	2.584963	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53217852	53221818	KDM5C|ENST00000467093.1	-	53217852,53218275,53220838,53221687	53217966,53218398,53220916,53221818	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	38380972	38380992	38380991	+	High_confidence	4	4	15	0.465415	3.056565	chr19	38381033	38381157	SINE|MIR|MIR	+	chr19	38380898	38383297	PSMD8|ENST00000590331.1	+	38380898,38381148,38382116,38383252	38380999,38381312,38382228,38383297	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	58455289	58455303	58455289	-	RAMPAGE_only	2	3	7	0.217194	2.584963	chr5	58455099	58455251	DNA|hAT-Charlie|MER5A	-	chr5	58453981	58460139	PLK2|NM_006622.3	-	58453981,58454910,58455284,58455538,58456025,58456491,58456944,58457180,58457487,58458083,58458398,58458724,58458984,58459689	58454774,58455021,58455414,58455779,58456155,58456589,58457092,58457379,58457583,58458171,58458528,58458841,58459092,58460139	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	107441569	107441591	107441590	-	RAMPAGE_only	3	4	11	0.341304	2.921928	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	0.909091
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	95027435	95027459	95027435	+	RAMPAGE_only	3	3	8	0.248221	2.807355	chr7	95025363	95027544	LINE|L1|L1PA7	-	chr7	94910082	95290364	PPP1R9A|ENST00000289495.7	+	94910082,95111258,95120711,95161866,95198348,95225960,95247472,95250025,95251761,95251958,95268549,95269260,95273898,95274084,95284017,95286205,95288535,95290090	94911508,95111391,95120832,95161971,95198484,95226116,95247526,95250255,95251858,95252130,95268707,95269507,95273986,95274168,95284216,95286325,95288718,95290364	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	187021850	187021851	187021850	+	High_confidence	5	8	8	0.248221	3.000000	chr3	187021811	187022350	LTR|ERVL|MER21A	+	chr3	187021855	187078553	ST6GAL1|ENST00000448044.5	+	187021855,187038741,187042653,187051248,187072848,187074158,187075561	187022004,187038873,187043310,187051346,187072947,187074333,187078553	0.625000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	30508185	30508190	30508189	+	RAMPAGE_only	8	9	15	0.465415	3.467720	chr8	30507969	30508353	LTR|ERVL-MaLR|MLT1B	+	chr8	30479329	30547517	RBPMS|ENST00000522694.1	+	30479329,30504285,30544493,30545163,30547291	30479377,30504436,30544624,30545220,30547517	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr18	48662918	48662935	48662934	+	RAMPAGE_only	7	8	18	0.558498	3.572469	chr18	48662701	48663071	LINE|L1|L1ME3A	-	chr18	48692511	48758229	CTIF|ENST00000587769.1	+	48692511,48711618,48757918	48692670,48711695,48758229	0.722222
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	31053448	31053449	31053448	+	High_confidence	25	26	26	0.806719	4.243856	chr6	31053266	31053607	LTR|ERVL-MaLR|THE1A	+	chr6	31053449	31059890	HCG22|NR_003948.2	+	31053449,31054099,31055709,31059407	31053531,31054516,31056910,31059890	0.961538
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	79795996	79796030	79795996	-	High_confidence	3	4	18	0.558498	3.503258	chr12	79795875	79796042	DNA|hAT-Charlie|Charlie8	-	chr12	79775917	79796790	PPP1R12A|ENST00000550299.5	-	79775917,79778549,79779320,79781814,79786373,79788647,79790466,79793862,79795637,79796781	79776015,79778600,79779351,79781862,79786478,79788783,79790483,79793928,79795759,79796790	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	27243370	27243371	27243370	-	RAMPAGE_only	8	8	9	0.279249	2.750000	chr16	27243362	27243410	LINE|L2|L2c	+	chr16	27233069	27258151	NSMCE1|ENST00000563900.5	-	27233069,27234187,27235177,27257434,27258083	27233147,27234265,27235299,27257581,27258151	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	70590308	70590335	70590328	+	RAMPAGE_only	28	28	79	2.451184	4.946407	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.848101
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	52570278	52570324	52570323	+	RAMPAGE_only	6	6	16	0.496442	3.456565	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.687500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	201427175	201427176	201427175	-	RAMPAGE_only	16	16	16	0.496442	3.577820	chr1	201427119	201427295	SINE|MIR|MIR	-	chr1	201408863	201429866	TNNI1|ENST00000336092.8	-	201408863,201410325,201411356,201413031,201414517,201415212,201417115,201417782,201421672,201427174,201428837,201429698	201409250,201410435,201411533,201413121,201414649,201415254,201417119,201417812,201421726,201427293,201429274,201429866	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	30743857	30743880	30743872	+	RAMPAGE_only	4	4	10	0.310276	2.641604	chr13	30743467	30743894	LINE|L2|L2c	+	chr13	30735507	30764426	ALOX5AP|ENST00000380490.4	+	30735507,30744059,30752051,30755943,30763943	30735675,30744159,30752122,30756025,30764426	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	43704037	43704050	43704037	+	RAMPAGE_only	3	3	9	0.279249	2.725481	chr2	43704069	43704379	LINE|L1|L1MB2	+	chr2	43637307	43765792	PLEKHH2|ENST00000405000.6	+	43637307,43644670,43658665,43678862,43692513,43694430,43695142,43697170,43699646,43703980,43706321,43707400,43709989,43710219,43710488,43720668,43726271,43729636,43731489,43738340,43740945,43742740,43743833,43745865,43753618,43757118,43758899,43762303,43764227,43765412	43637379,43644796,43658867,43678925,43692663,43694514,43695224,43697356,43700608,43704056,43706416,43707545,43710126,43710330,43712383,43720749,43726451,43729745,43731602,43738520,43741126,43742918,43743989,43745963,43753760,43757264,43759029,43762390,43764365,43765792	0.555556
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	153505632	153505659	153505658	+	High_confidence	4	4	14	0.434387	3.182006	chrX	153505574	153505672	SINE|MIR|MIRb	-	chrX	153505868	153508805	BGN|ENST00000492658.1	+	153505868,153506528,153508679	153506076,153506614,153508805	0.785714
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	2759797	2759816	2759815	+	High_confidence	2	2	7	0.217194	2.584963	chr16	2759705	2759830	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	85318043	85318073	85318060	+	High_confidence	3	3	12	0.372332	3.251629	chr12	85312419	85318459	LINE|L1|L1PA2	-	chr12	85318059	85342912	AC131532.1|ENST00000555596.1	+	85318059,85318957,85342471	85318115,85318979,85342912	0.583333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	41359606	41359607	41359606	+	High_confidence	14	15	15	0.465415	3.182006	chr4	41359537	41359637	LTR|ERVL|LTR33	-	chr4	41359606	41699003	LIMCH1|ENST00000513024.5	+	41359606,41494535,41524408,41598919,41603874,41605893,41613465,41619187,41644499,41646122,41646484,41650392,41661419,41662820,41666560,41670717,41671553,41676381,41680005,41680954,41682332,41684396,41685709,41689526,41692281,41697159	41359803,41494606,41524478,41599026,41603905,41606004,41613661,41619440,41644626,41646280,41646893,41650608,41661510,41662984,41666666,41670792,41671594,41676462,41680098,41681059,41682460,41684518,41685830,41689635,41692384,41699003	0.866667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	6208681	6208682	6208681	-	High_confidence	405	405	405	12.566197	4.148742	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.982716
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	74198097	74198117	74198116	-	RAMPAGE_only	4	4	8	0.248221	2.807355	chrX	74196376	74198555	LINE|L1|L1MA9	-	chrX	74196350	74293574	FTX|ENST00000603037.2	-	74196350,74247331,74274341,74280393,74280930,74281701,74293351	74203909,74247424,74274410,74280494,74281085,74281848,74293574	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	147937505	147937543	147937542	+	RAMPAGE_only	6	7	21	0.651581	3.721928	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940580	147943863	FMR1|ENST00000492846.1	+	147940580,147943130	147940662,147943863	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	180609180	180609252	180609180	+	RAMPAGE_only	3	3	37	1.148023	3.271474	chr3	180609089	180609314	DNA|hAT-Charlie|MER20	+	chr3	180602216	180618948	MSTRG.17118.7	+	180602216,180602890,180603123,180604224,180604477,180604851,180605765,180606252,180606480,180607647,180608700	180602422,180603015,180603323,180604309,180604607,180605007,180605837,180606372,180606603,180607765,180618948	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	129493040	129493058	129493040	-	RAMPAGE_only	2	2	8	0.248221	3.000000	chrX	129492703	129493323	LINE|L1|L1ME4a	+	chrX	129446845	129523405	SMARCA1|ENST00000371121.4	-	129446845,129448332,129465519,129465843,129468772,129471203,129480700,129481074,129487017,129488936,129490059,129491940,129493039,129496749,129497844,129499731,129504733,129506079,129507940,129511803,129515686,129515893,129516330,129518360,129523196	129447233,129448443,129465732,129465962,129468905,129471326,129480814,129481185,129487137,129489085,129490192,129492093,129493075,129496871,129498071,129499841,129504802,129506211,129508096,129511983,129515787,129515994,129516497,129518447,129523405	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	132411462	132411506	132411462	-	High_confidence	3	3	13	0.403359	3.180833	chrX	132411450	132411624	SINE|MIR|MIR3	-	chrX	132390853	132411382	MBNL3|ENST00000473364.1	-	132390853,132392142,132406227,132411189	132391083,132392334,132406392,132411382	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	48199424	48199435	48199424	-	RAMPAGE_only	5	5	17	0.527470	3.577820	chr17	48199174	48199607	LINE|L2|L2c	+	chr17	48180091	48185179	SKAP1|ENST00000579336.1	-	48180091,48182393,48184722	48180248,48182457,48185179	0.764706
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	13851425	13851435	13851425	-	High_confidence	8	8	14	0.434387	3.235926	chr20	13851304	13851476	LINE|L2|L2a	+	chr20	13849246	13851419	SEL1L2|ENST00000482196.5	-	13849246,13850190,13851323	13849604,13850319,13851419	0.785714
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	49539126	49539152	49539151	+	RAMPAGE_only	21	24	79	2.451184	4.851116	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49527617	49543638	RCN3|ENST00000270645.7	+	49527617,49528466,49534192,49537032,49539118,49542552,49543105	49528058,49528714,49534395,49537205,49539179,49542752,49543638	0.924051
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	179325263	179325289	179325288	+	High_confidence	3	4	8	0.248221	2.807355	chr3	179325011	179325319	SINE|Alu|AluSp	-	chr3	179325152	179333829	ZNF639|ENST00000466264.5	+	179325152,179327560,179328282,179329617,179332988,179333268	179325322,179327631,179328351,179329728,179333123,179333829	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	72135708	72135728	72135708	+	High_confidence	5	5	20	0.620553	3.681881	chr11	72135672	72135735	SINE|MIR|MIR3	-	chr11	72135709	72139892	FOLR3|ENST00000612844.4	+	72135709,72135946,72138832,72139346,72139586	72135768,72136120,72139149,72139482,72139892	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	90467511	90467534	90467522	+	RAMPAGE_only	4	4	10	0.310276	2.646439	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	52093952	52094024	52093990	-	High_confidence	4	4	20	0.620553	3.681881	chr19	52093852	52094032	SINE|Alu|AluJb	+	chr19	52076907	52093899	ZNF841|ENST00000599430.1	-	52076907,52084786,52088936,52093845	52077084,52084878,52089002,52093899	0.550000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	17374741	17374746	17374741	+	High_confidence	20	26	58	1.799604	5.442282	chr7	17374638	17374768	DNA|hAT-Charlie|MER5B	+	chr7	17374866	17466664	KCCAT333|ENST00000419463.1	+	17374866,17448880,17450994,17466151	17375055,17448948,17451061,17466664	0.810345
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	69237146	69237183	69237182	-	RAMPAGE_only	6	6	37	1.148023	4.939183	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69169989	69386073	FRMD4B|ENST00000398540.7	-	69169989,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69195230,69196254,69196899,69198697,69216262,69218321,69221857,69224606,69249225,69250042,69287751,69302342,69311262,69313451,69385827	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195141,69195364,69196396,69197038,69198774,69216349,69218379,69221923,69224690,69249248,69250099,69287836,69302435,69311357,69313517,69386073	0.756757
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	123071385	123071475	123071409	-	RAMPAGE_only	5	9	63	1.954742	4.534325	chr11	123071151	123071444	SINE|Alu|AluSx	+	chr11	123069864	123195281	CLMP|ENST00000448775.3	-	123069864,123074701,123083084,123083679,123084511,123097794,123194912	123073774,123074843,123083207,123083847,123084713,123097952,123195281	0.984127
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	79492585	79492601	79492595	+	High_confidence	6	8	29	0.899802	4.008622	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.896552
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	130720037	130720049	130720046	-	RAMPAGE_only	4	4	11	0.341304	3.321928	chr7	130719055	130720081	LINE|L2|L2a	+	chr7	130668645	130687432	TSGA13|NM_001304968.1	-	130668645,130671660,130672733,130679154,130680945,130683593,130685187,130686443,130686830	130669183,130671788,130672876,130679367,130681017,130683672,130685360,130686543,130687432	0.727273
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	150457305	150457335	150457322	+	RAMPAGE_only	5	5	19	0.589525	3.326360	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150364710	150473556	RPRD2|ENST00000369068.4	+	150364710,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150364919,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	0.947368
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	110496232	110496258	110496232	-	High_confidence	2	2	10	0.310276	3.121928	chr10	110496171	110496447	LINE|L2|L2b	+	chr10	110475103	110496204	AL355512.1|ENST00000607952.1	-	110475103,110496118	110475226,110496204	0.600000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	112299714	112299752	112299714	+	High_confidence	2	2	8	0.248221	3.000000	chr2	112299650	112299727	DNA|hAT-Charlie|MER58C	+	chr2	112299855	112308728	MSTRG.13605.3	+	112299855	112308728	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	16630890	16630909	16630908	+	High_confidence	8	9	14	0.434387	3.392747	chr21	16630604	16631044	LTR|ERVL?|LTR89	-	chr21	16630826	16640633	MIR99AHG|ENST00000413645.1	+	16630826,16640229	16630972,16640633	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	81154156	81154184	81154162	-	High_confidence	5	5	19	0.589525	3.932138	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81087369	81154157	PRKG2|NM_001282480.1	-	81087369,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153429,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153555,81153721,81154157	0.789474
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	201168505	201168513	201168512	+	RAMPAGE_only	6	6	12	0.372332	3.277613	chr2	201168284	201170266	LINE|L1|L1P3	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	0.916667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	151687237	151687252	151687244	-	High_confidence	10	10	39	1.210078	4.631305	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr22	31082936	31082943	31082940	+	High_confidence	9	9	19	0.589525	3.725481	chr22	31082905	31083026	SINE|MIR|MIRc	-	chr22	31082859	31104623	SMTN|ENST00000619644.4	+	31082859,31083178,31087964,31088512,31088698,31088871,31089698,31090107,31090807,31090960,31091674,31093783,31095302,31095533,31096732,31096997,31097268,31098666,31099061,31099744,31104315	31083002,31083309,31088113,31088606,31088777,31088969,31090019,31090180,31090879,31091482,31091847,31093876,31095455,31095609,31096897,31097060,31097338,31098840,31099179,31099896,31104623	0.842105
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr16	81664321	81664344	81664343	+	RAMPAGE_only	6	9	17	0.527470	3.077820	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.941176
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	12183997	12184019	12183997	-	RAMPAGE_only	3	3	10	0.310276	2.921928	chr12	12183981	12184016	LINE|RTE-BovB|MamRTE1	-	chr12	12116028	12203323	MSTRG.4887.3	-	12116028,12120369,12121085,12124564,12125295,12126690,12130782,12131820,12135174,12138324,12147365,12148941,12150835,12158828,12159779,12162192,12164272,12165078,12179809,12181042,12183979,12186922,12203202	12119330,12120576,12121420,12124662,12125432,12126921,12130893,12132057,12135300,12138534,12147556,12149153,12151038,12159155,12159964,12162419,12164562,12165295,12179981,12181439,12184111,12187119,12203323	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	87219503	87219506	87219503	+	RAMPAGE_only	3	3	7	0.217194	2.584963	chr11	87219487	87219730	LTR|ERVL-MaLR|MLT1B	-	chr11	87038006	87322350	TMEM135|ENST00000305494.5	+	87038006,87067693,87071522,87091361,87157340,87236637,87295781,87302295,87305935,87309504,87313424,87314470,87318136,87319309,87321200	87038186,87067821,87071615,87091395,87157406,87236684,87295823,87302442,87306005,87309672,87313488,87314547,87318235,87319377,87322350	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	59892716	59892746	59892716	-	High_confidence	7	7	28	0.868774	4.664498	chr17	59892529	59892669	SINE|MIR|MIRb	-	chr17	59860033	59892858	TUBD1|ENST00000394239.7	-	59860033,59866595,59874538,59878102,59880893,59886082,59890830,59892696	59860424,59866749,59874703,59878334,59881110,59886230,59891041,59892858	0.750000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	91353282	91353285	91353284	-	RAMPAGE_only	5	7	11	0.341304	2.845351	chr12	91353109	91353281	LTR|ERVL-MaLR|MLT1A0	-	chr12	91143276	91183124	DCN|NM_001920.4	-	91143276,91151653,91153095,91157074,91158295,91164604,91178341,91182654	91146252,91151792,91153189,91157188,91158509,91164717,91178585,91183124	0.818182
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	46463605	46463623	46463605	-	High_confidence	4	4	13	0.403359	3.180833	chr3	46463529	46463617	LTR|Gypsy|MamGypsy2-LTR	-	chr3	46436004	46463671	LTF|NM_001199149.1	-	46436004,46437939,46439295,46441415,46443440,46445280,46446439,46447307,46448862,46449853,46450494,46454304,46455294,46455795,46456289,46459655,46463443	46436229,46438129,46439480,46441483,46443582,46445436,46446493,46447398,46449017,46450028,46450673,46454360,46455442,46455978,46456398,46459819,46463671	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	50756576	50756601	50756600	-	RAMPAGE_only	6	6	12	0.372332	3.188722	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.916667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	53585017	53585018	53585017	-	RAMPAGE_only	6	6	9	0.279249	3.000000	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	41871736	41871746	41871745	-	RAMPAGE_only	5	5	11	0.341304	2.921928	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.727273
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	39387780	39387781	39387780	+	High_confidence	8	9	11	0.341304	2.732159	chr3	39387553	39387832	LINE|L2|L2	-	chr3	39387807	39391510	SLC25A38|ENST00000642978.1	+	39387807,39389361,39389494,39390422,39391440	39387865,39389389,39389616,39390507,39391510	0.727273
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr13	35155805	35155839	35155805	+	RAMPAGE_only	4	4	12	0.372332	3.251629	chr13	35155732	35155807	DNA|hAT-Ac|OldhAT1	-	chr13	35069951	35672735	MSTRG.6175.6	+	35069951,35070718,35095995,35098296,35109289,35110809,35117413,35118227,35118376,35123481,35142268,35155773,35156082,35157077,35159015,35161749,35164355,35173463,35176995,35182359,35183975,35195863,35208699,35211052,35232491,35290388,35309527,35349107,35352156,35432268,35452091,35472399,35550476,35550929,35554986,35566904,35583897,35593327,35606425,35628080,35646258,35649654,35651804,35654854,35655578,35665084,35667373,35668367,35670900	35070105,35070852,35096101,35098405,35109442,35110978,35117493,35118290,35118474,35123574,35142377,35155855,35156206,35157270,35160032,35161967,35171452,35173594,35177103,35182528,35184071,35196302,35208854,35211179,35232619,35290450,35309592,35349216,35352323,35432393,35452235,35472536,35550594,35551032,35555102,35567017,35584038,35593447,35606578,35628248,35646348,35649847,35651876,35655010,35655749,35665186,35667570,35668519,35672735	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	119032835	119033148	119032835	+	RAMPAGE_only	26	26	364	11.294064	5.901370	chr4	119032737	119032853	SINE|Alu|AluJr	+	chr4	119023470	119037447	MSTRG.17914.8	+	119023470,119029844	119027438,119037447	0.989011
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	119034325	119034421	119034420	+	RAMPAGE_only	6	9	36	1.116995	4.631293	chr4	119034263	119034446	SINE|tRNA|LFSINE_Vert	+	chr4	119023470	119037447	MSTRG.17914.8	+	119023470,119029844	119027438,119037447	0.944444
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	106265981	106266001	106265981	-	RAMPAGE_only	2	3	9	0.279249	2.750000	chr7	106265919	106266168	SINE|MIR|MIRc	-	chr7	106248284	106284887	MSTRG.21613.1	-	106248284,106253016,106254363,106261587,106269153,106272529,106274945,106277022,106284827	106251193,106253151,106254504,106268600,106269312,106272658,106275049,106277179,106284887	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	157487448	157487449	157487448	-	RAMPAGE_only	6	6	6	0.186166	2.584963	chr3	157486755	157488128	LINE|L1|L1ME3C	+	chr3	157460094	157489356	VEPH1|ENST00000482434.1	-	157460094,157470313,157489054	157460355,157470529,157489356	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	2798793	2798822	2798821	+	High_confidence	4	5	8	0.248221	2.750000	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	24211894	24211897	24211894	-	High_confidence	5	5	10	0.310276	2.921928	chr14	24211871	24212083	SINE|MIR|MIR	-	chr14	24210664	24212109	CHMP4A|ENST00000552620.1	-	24210664,24211410,24211679	24210768,24211592,24212109	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	54528758	54528773	54528758	-	RAMPAGE_only	4	5	17	0.527470	3.875000	chr1	54528534	54529066	LTR|ERVL-MaLR|MLT1J	-	chr1	54516411	54517259	AC099796.1|ENST00000433377.1	-	54516411,54517203	54517038,54517259	0.529412
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	40894523	40894542	40894523	+	High_confidence	2	2	8	0.248221	2.500000	chr15	40894565	40894630	LINE|CR1|X6A_LINE	+	chr15	40894466	40902861	VPS18|ENST00000558474.1	+	40894466,40895937,40898906,40902615	40894859,40896079,40898998,40902861	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chrX	13606453	13606510	13606509	+	RAMPAGE_only	6	6	49	1.520355	4.243829	chrX	13606482	13606534	LINE|RTE-BovB|MamRTE1	-	chrX	13569621	13633575	EGFL6|ENST00000380602.3	+	13569621,13589555,13594835,13599974,13603316,13606378,13608323,13617729,13619162,13623820,13627010,13632984	13569935,13589668,13594928,13600094,13603436,13606513,13608446,13618053,13619243,13623925,13627276,13633575	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	66401878	66401879	66401878	+	RAMPAGE_only	5	6	8	0.248221	2.750000	chr15	66401474	66401958	LINE|L2|L2c	-	chr15	66386872	66491544	MAP2K1|NM_002755.3	+	66386872,66435026,66436745,66443279,66444655,66481754,66484989,66487227,66489214,66489717,66490501	66387427,66435237,66436892,66443357,66444707,66481879,66485191,66487292,66489276,66489763,66491544	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	133089587	133089678	133089677	+	RAMPAGE_only	21	22	94	2.916599	5.591486	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	0.946809
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	85962145	85962175	85962174	+	RAMPAGE_only	2	2	7	0.217194	2.584963	chr9	85962208	85962520	SINE|Alu|AluSx	+	chr9	85941528	86025462	NAA35|NM_001321882.1	+	85941528,85942154,85956359,85958471,85959792,85962012,85974966,85975113,85976684,85977362,85978266,85996398,86003584,86007357,86009864,86013045,86013718,86016538,86017497,86018254,86018698,86020888,86021900	85941874,85942283,85956393,85958586,85959867,85962180,85975033,85975157,85976735,85977446,85978381,85996577,86003644,86007464,86009931,86013144,86013897,86016675,86017565,86018395,86018821,86020969,86025462	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	42675601	42675613	42675612	+	High_confidence	10	12	19	0.589525	3.836592	chr15	42675586	42675640	LINE|L2|L2a	+	chr15	42675495	42682213	STARD9|ENST00000562139.1	+	42675495,42675871,42681421,42682103	42675746,42675975,42681612,42682213	0.842105
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	42662918	42662919	42662918	+	RAMPAGE_only	6	7	8	0.248221	2.750000	chr17	42662805	42662965	LTR|ERVL|MER21A	+	chr17	42659306	42666822	TUBG2|ENST00000588870.1	+	42659306,42660148,42660638,42663376,42665475,42665677,42666086,42666322,42666602	42659946,42660316,42660707,42663503,42665562,42665827,42666239,42666484,42666822	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	35432451	35432453	35432451	-	High_confidence	4	9	10	0.310276	2.725481	chr17	35432210	35432724	LTR|ERV1|MER51A	-	chr17	35410921	35432524	SLFN12|NM_018042.4	-	35410921,35420273,35421989,35432187	35411927,35420381,35423068,35432524	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	129488756	129488857	129488856	+	High_confidence	33	33	179	5.553949	5.494702	chr9	129488846	129488932	SINE|MIR|MIR3	+	chr9	129488911	129503430	LINC00963|ENST00000608369.1	+	129488911,129490843,129493415,129503322	129489299,129491128,129493595,129503430	0.960894
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	120533982	120534032	120533982	-	RAMPAGE_only	4	4	27	0.837746	4.504706	chr9	120533823	120534313	LINE|L2|L2c	+	chr9	120406145	120536437	CDK5RAP2|ENST00000483412.5	-	120406145,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120467859,120470110,120471747,120477349,120487293,120491306,120518426,120524985,120527805,120528743,120529977,120536371	120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120467997,120470220,120471878,120477450,120487437,120491477,120518645,120525078,120527925,120528797,120530140,120536437	0.962963
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	96387561	96387584	96387561	-	High_confidence	2	2	9	0.279249	2.750000	chr11	96387408	96387600	SINE|MIR|MIRc	-	chr11	96352768	96387904	CCDC82|ENST00000278520.9	-	96352768,96358992,96364979,96371012,96373374,96383268,96383961,96386253,96387529	96353714,96359178,96365150,96371137,96373467,96383473,96384761,96386293,96387904	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	142596124	142596125	142596124	+	High_confidence	7	7	7	0.217194	2.521641	chr3	142595959	142596147	DNA|hAT-Charlie|MER5A	+	chr3	142596386	142713664	PLS1|NM_001145319.1	+	142596386,142664201,142669389,142670992,142676156,142678031,142684005,142684252,142686283,142689617,142694468,142697952,142703867,142704462,142711500,142711871	142596509,142664307,142669553,142671122,142676289,142678113,142684171,142684395,142686376,142689813,142694547,142698067,142704001,142704586,142711625,142713664	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	15908707	15908710	15908707	+	RAMPAGE_only	8	8	15	0.465415	3.773557	chr2	15908516	15908879	LTR|ERVL-MaLR|THE1B	+	chr2	15920398	15936018	MYCNUT|NR_125783.1	+	15920398,15921567,15935773	15921063,15921697,15936018	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	202582540	202582577	202582571	+	RAMPAGE_only	5	5	17	0.527470	2.813846	chr1	202582605	202582914	SINE|Alu|AluY	+	chr1	202540113	202588569	PPP1R12B|NM_001197131.1	+	202540113,202558876,202562777,202564442,202567777,202569146,202580473	202540241,202558893,202562922,202564547,202567831,202569197,202588569	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	30568958	30568977	30568976	-	RAMPAGE_only	4	4	9	0.279249	2.641604	chr7	30568321	30569340	LTR|ERV1|MER4-int	+	chr7	30558095	30573088	GARS-DT|ENST00000584621.5	-	30558095,30561465,30563730,30568832,30572999	30559355,30562128,30563998,30568989,30573088	0.777778
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr3	152267218	152267253	152267240	-	RAMPAGE_only	2	3	10	0.310276	3.321928	chr3	152267093	152267213	SINE|Alu|FLAM_C	-	chr3	152262615	152269555	MBNL1-AS1|ENST00000608395.1	-	152262615,152269427	152269072,152269555	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr6	144533090	144533189	144533105	+	RAMPAGE_only	8	8	51	1.582410	5.308758	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	0.843137
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	8177017	8177031	8177017	+	RAMPAGE_only	2	2	7	0.217194	2.584963	chr8	8172260	8180087	LTR|ERV1|HERVE-int	+	chr8	8065645	8180527	AC105233.5|ENST00000641338.1	+	8065645,8086006,8154394,8177754	8065816,8086223,8154530,8180527	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	27529239	27529240	27529239	+	RAMPAGE_only	9	9	9	0.279249	2.725481	chr14	27529044	27529416	LTR|ERVL-MaLR|THE1B	+	chr14	27612587	27639636	LINC00645|ENST00000557359.5	+	27612587,27613420,27634243,27636419	27612677,27613496,27634344,27639636	0.555556
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	95516120	95516123	95516120	+	High_confidence	5	7	15	0.465415	3.056565	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	174410286	174410330	174410313	+	High_confidence	5	5	35	1.085968	3.804582	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.885714
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	79455514	79455537	79455514	-	High_confidence	3	3	10	0.310276	2.846439	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	159428326	159428357	159428356	-	RAMPAGE_only	51	57	108	3.350986	6.114528	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	116648824	116648918	116648864	-	RAMPAGE_only	10	11	74	2.296046	5.136696	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116642129	116755821	EIF3H|ENST00000521861.5	-	116642129,116646470,116648805,116655855,116657214,116658812,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116658980,116726172,116755821	0.986486
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	69315805	69315824	69315823	+	High_confidence	3	4	12	0.372332	3.277613	chr10	69315806	69315937	SINE|MIR|MIRc	+	chr10	69315853	69401882	HK1|NM_033496.2	+	69315853,69343826,69359896,69364782,69368535,69369236,69369440,69376933,69379861,69382486,69384332,69384795,69386322,69389196,69392124,69394949,69398594,69400990	69316014,69343989,69360045,69364902,69368631,69369336,69369624,69377089,69380095,69382791,69384481,69384915,69386418,69389296,69392308,69395105,69398828,69401882	0.833333
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	50172503	50172545	50172544	+	High_confidence	2	2	6	0.186166	2.584963	chr20	50172372	50172756	LTR|ERVL|LTR33A_	+	chr20	50172569	50176671	LINC01273|NR_109943.1	+	50172569,50172922,50176280	50172788,50173017,50176671	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	217937161	217937162	217937161	-	High_confidence	4	4	6	0.186166	2.584963	chr2	217936979	217937293	LINE|L2|L2c	+	chr2	217897794	217937162	TNS1|ENST00000423413.1	-	217897794,217900462,217906334,217907209,217920194,217936974	217897969,217900512,217906385,217907251,217920236,217937162	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	58578102	58578138	58578132	-	High_confidence	20	28	88	2.730433	5.636748	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.579545
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	110936582	110936585	110936584	+	High_confidence	35	53	77	2.389129	4.720346	chr12	110936431	110936780	LTR|ERVL-MaLR|THE1D	+	chr12	110936601	110937451	LINC01405|ENST00000331096.2	+	110936601,110937184	110936698,110937451	0.740260
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	91178964	91178975	91178974	-	High_confidence	7	9	16	0.496442	3.506891	chr12	91178973	91179201	LINE|L2|L2c	+	chr12	91143276	91178646	DCN|NM_133506.3	-	91143276,91164604,91178341	91146252,91164717,91178646	0.687500
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	9993957	9993969	9993966	-	High_confidence	3	3	10	0.310276	3.169925	chr11	9993915	9994007	DNA|hAT-Ac|OldhAT1	+	chr11	9853706	9993104	SBF2|ENST00000420722.2	-	9853706,9856457,9858225,9895942,9961956,9963772,9968340,9989496,9992989	9853712,9856720,9858396,9896011,9962106,9963882,9968545,9989595,9993104	0.900000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	32403108	32403317	32403148	-	RAMPAGE_only	14	15	134	4.157705	5.606995	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354350	32420332	MSTRG.18416.2	-	32354350,32363947,32364163,32379114,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820	32355939,32364045,32364275,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420332	0.970149
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr19	36850361	36850383	36850371	+	High_confidence	5	6	22	0.682608	3.936260	chr19	36850362	36850429	LTR|ERV1|MER67D	-	chr19	36850885	36893218	ZNF345|NR_038362.1	+	36850885,36851829,36892817	36850968,36851904,36893218	0.590909
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	88418876	88418889	88418887	+	RAMPAGE_only	2	4	8	0.248221	2.521641	chr9	88418784	88418941	SINE|MIR|MIR	+	chr9	88389370	88468477	SPIN1|ENST00000483785.1	+	88389370,88426381,88448940,88462495,88468371	88389410,88426591,88448989,88462749,88468477	0.625000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	93412356	93412378	93412368	-	RAMPAGE_only	10	12	27	0.837746	4.085055	chr12	93412068	93412451	LINE|L2|L2a	+	chr12	93409741	93441256	UBE2N|ENST00000549833.1	-	93409741,93410733,93411052,93424269,93441143	93410079,93410874,93411299,93424390,93441256	0.888889
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	54235489	54235506	54235489	-	RAMPAGE_only	3	3	7	0.217194	2.807355	chr12	54235340	54235626	SINE|Alu|AluY	+	chr12	54230945	54259545	CBX5|NM_001127322.1	-	54230945,54246114,54252040,54257513,54259269	54241905,54246215,54252227,54257692,54259545	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	46090540	46090541	46090540	-	RAMPAGE_only	5	5	8	0.248221	2.500000	chr11	46090495	46090712	DNA|hAT-Charlie|MER103C	-	chr11	45971347	46092205	PHF21A|ENST00000531959.5	-	45971347,45979759,46076753,46079133,46084165,46092182	45971367,45979966,46076840,46079166,46084302,46092205	0.875000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr7	2242922	2242923	2242922	+	High_confidence	12	12	12	0.372332	3.418296	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	1.000000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	1241443	1241459	1241443	-	RAMPAGE_only	4	4	12	0.372332	2.732159	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1225437	1248740	CTBP1|ENST00000513420.1	-	1225437,1228198,1238182,1241324,1248660	1225566,1228343,1238337,1241519,1248740	0.916667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	41820021	41820022	41820021	+	High_confidence	8	8	8	0.248221	2.500000	chr17	41819972	41820080	SINE|MIR|MIRc	+	chr17	41820002	41822293	FKBP10|ENST00000490938.5	+	41820002,41820946,41821653,41822222	41820461,41821089,41821817,41822293	0.625000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr15	85330163	85330182	85330163	-	RAMPAGE_only	2	2	8	0.248221	2.807355	chr15	85330152	85330319	DNA|hAT-Charlie|MER5A1	+	chr15	85314666	85315516	ADAMTS7P4|ENST00000558015.1	-	85314666,85315364	85314984,85315516	0.500000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	50131130	50131162	50131139	-	High_confidence	119	122	371	11.511257	6.391861	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.991914
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr4	152412488	152412529	152412488	-	High_confidence	8	8	28	0.868774	4.253434	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.964286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr20	421820	421821	421820	+	High_confidence	4	4	7	0.217194	2.584963	chr20	421657	421956	LINE|L2|L2b	-	chr20	421941	427488	RBCK1|ENST00000621487.1	+	421941,427312	422238,427488	0.857143
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	643627	643636	643635	-	High_confidence	21	21	61	1.892686	4.493179	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564295	643685	NINJ2|NM_001294346.1	-	564295,565216,565949,643510	564681,565401,566178,643685	0.950820
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr12	123652718	123652727	123652718	+	RAMPAGE_only	3	4	10	0.310276	2.503258	chr12	123652708	123652795	LINE|L1|L1M5	+	chr12	123648050	123660232	GTF2H3|ENST00000543154.1	+	123648050,123650993,123652531,123652706,123654923,123659515,123659794,123660045,123660165	123648126,123651056,123652561,123652735,123654998,123659584,123659930,123660082,123660232	0.800000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr9	92720718	92720756	92720730	-	RAMPAGE_only	5	5	25	0.775691	3.657268	chr9	92720689	92720791	DNA|TcMar-Tigger|Tigger19b	-	chr9	92711362	92764801	BICD2|NM_001003800.1	-	92711362,92717796,92718538,92720299,92722655,92729023,92764504	92715463,92717948,92719582,92720755,92722808,92729236,92764801	0.960000
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr2	45192707	45192708	45192707	-	High_confidence	4	4	7	0.217194	2.584963	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45187169	45192285	LINC01121|ENST00000454673.1	-	45187169,45192139	45189249,45192285	0.571429
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	1655477	1655481	1655480	-	RAMPAGE_only	8	8	13	0.403359	3.392747	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.769231
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr17	35894272	35894273	35894272	-	RAMPAGE_only	178	179	199	6.174502	6.228476	chr17	35893744	35894693	LTR|ERVL|MER21A	-	chr17	35893706	35911023	AC015849.5|ENST00000604907.1	-	35893706,35906167	35894323,35911023	0.592965
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr5	55982788	55982800	55982799	-	High_confidence	11	13	23	0.713636	3.970573	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.913043
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	89888961	89888962	89888961	+	RAMPAGE_only	7	7	11	0.341304	2.913977	chr10	89888932	89889442	LTR|ERV1|LTR49	+	chr10	89853905	89914948	LINC01374|ENST00000629067.1	+	89853905,89914635	89854007,89914948	0.636364
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr11	120447670	120447695	120447670	+	RAMPAGE_only	3	4	11	0.341304	2.521928	chr11	120447536	120447822	SINE|Alu|AluSx1	+	chr11	120438447	120451633	ARHGEF12|ENST00000528225.5	+	120438447,120441706,120442103,120445421,120446402,120446947,120447873,120448233,120449108,120451511	120440221,120441817,120442202,120445464,120446508,120447085,120447906,120448348,120449214,120451633	0.727273
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr21	46256844	46256893	46256892	-	High_confidence	3	3	9	0.279249	3.169925	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.666667
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr1	19344373	19344429	19344373	-	RAMPAGE_only	10	11	45	1.396244	4.771598	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.955556
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr14	67886384	67886389	67886384	+	High_confidence	3	4	7	0.217194	2.584963	chr14	67886207	67886761	LTR|ERVL-MaLR|MLT1F2	-	chr14	67886597	68540249	RAD51B|ENST00000497460.5	+	67886597,67887020,68291883,68411423,68468171,68540199	67886629,67887204,68291980,68411527,68468250,68540249	0.714286
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr10	103181328	103181329	103181328	-	RAMPAGE_only	38	38	38	1.179051	5.142664	chr10	103181211	103181349	SINE|Alu|FLAM_C	+	chr10	103088016	103174982	NT5C2|ENST00000404739.7	-	103088016,103090610,103090935,103091563,103093138,103093971,103094347,103095938,103097290,103098930,103099925,103101044,103101234,103105705,103106588,103139405,103174857	103089908,103090787,103090996,103091615,103093309,103094038,103094455,103095980,103097374,103098984,103100019,103101102,103101326,103105801,103106706,103139479,103174982	0.552632
urinary_bladder_female_fetal_20_weeks_and_female_fetal_24_weeks	chr8	73054401	73054402	73054401	+	RAMPAGE_only	7	7	9	0.279249	2.725481	chr8	73054230	73054521	SINE|Alu|AluJb	-	chr8	73052177	73063061	AC022893.1|ENST00000517664.1	+	73052177,73062938	73055603,73063061	1.000000
uterus_female_adult_53_years	chr2	96303166	96303182	96303166	-	RAMPAGE_only	8	9	22	1.301796	3.916127	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.909091
uterus_female_adult_53_years	chr17	47067498	47067518	47067498	-	High_confidence	78	80	282	16.686652	5.439254	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.978723
uterus_female_adult_53_years	chr19	3047779	3047812	3047779	-	High_confidence	6	8	15	0.887588	3.324863	chr19	3047758	3047946	LINE|L2|L2a	+	chr19	2997637	3047635	TLE2|NM_001144761.1	-	2997637,3002352,3005436,3005720,3006419,3008868,3009541,3011021,3013668,3014569,3015652,3017839,3019282,3019698,3025019,3027828,3028318,3028705,3045725,3047562	2997955,3002503,3005584,3005968,3006669,3008945,3009702,3011160,3013818,3014614,3015760,3017859,3019466,3019773,3025082,3027873,3028382,3028803,3045799,3047635	0.800000
uterus_female_adult_53_years	chr14	34536102	34536110	34536109	-	High_confidence	6	6	11	0.650898	3.027169	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.818182
uterus_female_adult_53_years	chr3	44439853	44439899	44439853	-	High_confidence	2	2	13	0.769243	3.584963	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44421126	44439917	C3orf86|ENST00000636468.1	-	44421126,44439796	44421813,44439917	0.769231
uterus_female_adult_53_years	chr2	46903674	46903706	46903705	-	RAMPAGE_only	5	5	11	0.650898	3.459432	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	1.000000
uterus_female_adult_53_years	chr8	38825311	38825361	38825360	+	RAMPAGE_only	15	16	53	3.136144	4.876611	chr8	38825404	38825672	DNA|hAT-Charlie|Charlie2a	+	chr8	38828981	38837097	STRG.29682.13	+	38828981,38831124,38836161	38830024,38831177,38837097	0.509434
uterus_female_adult_53_years	chr11	65434368	65434398	65434368	+	RAMPAGE_only	5	5	12	0.710070	3.095795	chr11	65434227	65434843	LINE|L1|L1ME3G	-	chr11	65427104	65444892	STRG.38652.2	+	65427104,65444781	65444029,65444892	0.916667
uterus_female_adult_53_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	11	11	11	0.650898	2.845351	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
uterus_female_adult_53_years	chr21	28048446	28048447	28048446	+	High_confidence	73	75	78	4.615457	4.057555	chr21	28048251	28048623	LTR|ERVL-MaLR|THE1B	+	chr21	28048446	28103580	LINC01697|ENST00000458316.1	+	28048446,28102549	28048537,28103580	0.948718
uterus_female_adult_53_years	chr19	11196112	11196157	11196131	-	High_confidence	18	18	56	3.313661	4.447731	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.964286
uterus_female_adult_53_years	chr11	17282813	17282822	17282813	+	RAMPAGE_only	4	4	10	0.591725	2.725481	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.700000
uterus_female_adult_53_years	chr16	27330147	27330148	27330147	+	High_confidence	8	9	10	0.591725	2.646439	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27330092	27342255	STRG.50148.1	+	27330092,27340185,27342120	27330198,27340273,27342255	0.500000
uterus_female_adult_53_years	chr19	3667348	3667349	3667348	-	RAMPAGE_only	7	7	8	0.473380	2.521641	chr19	3667202	3667314	SINE|MIR|MIR3	-	chr19	3656487	3664935	STRG.54923.1	-	3656487,3660965,3661870,3664821	3656557,3661083,3662001,3664935	0.875000
uterus_female_adult_53_years	chr7	6590246	6590300	6590299	+	High_confidence	4	4	17	1.005933	3.734522	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590143	6608724	C7orf26|ENST00000359073.9	+	6590143,6591702,6594434,6599828,6600126,6602100,6607959	6590475,6591867,6594600,6599892,6600356,6602140,6608724	0.588235
uterus_female_adult_53_years	chr22	49657346	49657356	49657348	-	High_confidence	7	10	19	1.124278	3.826875	chr22	49657329	49657700	LTR|ERVL-MaLR|MSTA	-	chr22	49620470	49657430	C22orf34|ENST00000405854.5	-	49620470,49624369,49624857,49626842,49656623	49620660,49624681,49624936,49627047,49657430	0.789474
uterus_female_adult_53_years	chr19	18227905	18227906	18227905	-	RAMPAGE_only	17	18	18	1.065105	3.969816	chr19	18227860	18227940	SINE|MIR|MIRc	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	0.944444
uterus_female_adult_53_years	chr11	57794021	57794034	57794021	+	RAMPAGE_only	2	2	8	0.473380	2.521641	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.875000
uterus_female_adult_53_years	chr2	48529375	48529376	48529375	+	High_confidence	9	10	14	0.828415	3.392747	chr2	48529341	48529410	SINE|MIR|MIRc	-	chr2	48529382	48531917	STON1|ENST00000484110.1	+	48529382,48529879	48529587,48531917	0.714286
uterus_female_adult_53_years	chr6	16402009	16402010	16402009	-	RAMPAGE_only	11	15	15	0.887588	3.456565	chr6	16401830	16402189	LTR|ERVL-MaLR|THE1B	-	chr6	16301684	16328475	STRG.21652.2	-	16301684,16306336,16326393	16301878,16306859,16328475	0.800000
uterus_female_adult_53_years	chr11	65441604	65441614	65441604	+	RAMPAGE_only	5	5	9	0.532553	3.000000	chr11	65441504	65441864	LINE|L1|L1MB7	-	chr11	65427104	65444892	STRG.38652.2	+	65427104,65444781	65444029,65444892	0.888889
uterus_female_adult_53_years	chr1	67791716	67791743	67791742	-	RAMPAGE_only	2	2	8	0.473380	2.521641	chr1	67791343	67792323	LINE|L2|L2a	+	chr1	67701465	67833467	GNG12|ENST00000370982.3	-	67701465,67707593,67777457,67833343	67705576,67707712,67777507,67833467	0.750000
uterus_female_adult_53_years	chr3	69237164	69237183	69237171	-	RAMPAGE_only	4	4	11	0.650898	3.321928	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69198696	69250212	FRMD4B|ENST00000483668.5	-	69198696,69216262,69218321,69221857,69224606,69249225,69250042	69198774,69216349,69218379,69221923,69224690,69249248,69250212	0.636364
uterus_female_adult_53_years	chr12	4580863	4580877	4580863	+	RAMPAGE_only	3	3	10	0.591725	2.921928	chr12	4580796	4580870	LINE|RTE-X|L4_C_Mam	+	chr12	4590071	4597173	DYRK4|NR_104115.1	+	4590071,4590329,4591159,4593001,4596148,4596588	4590207,4590554,4591298,4593165,4596445,4597173	1.000000
uterus_female_adult_53_years	chr9	129489111	129489126	129489125	+	High_confidence	21	27	54	3.195316	4.904588	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.814815
uterus_female_adult_53_years	chr9	122164574	122164596	122164595	+	High_confidence	21	33	65	3.846214	4.905639	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122164614	122174568	MORN5|ENST00000418632.1	+	122164614,122166767,122169644,122174495	122164647,122166915,122169756,122174568	0.538462
uterus_female_adult_53_years	chr14	44912628	44912629	44912628	-	High_confidence	5	5	8	0.473380	2.521641	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.875000
uterus_female_adult_53_years	chr10	52282155	52282199	52282178	+	RAMPAGE_only	2	4	13	0.769243	3.418296	chr10	52282132	52282197	LINE|CR1|L3	+	chr10	52046866	52294176	PRKG1|ENST00000373975.3	+	52046866,52054483,52062536,52081596,52133839,52161888,52251569,52271349,52272391,52280788,52282152,52288725,52288930,52290223,52293801	52046926,52054561,52062631,52081657,52133905,52161963,52251666,52271489,52272481,52280930,52282316,52288848,52288993,52290290,52294176	0.692308
uterus_female_adult_53_years	chr20	50131130	50131140	50131139	-	High_confidence	11	11	25	1.479313	4.055958	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.880000
uterus_female_adult_53_years	chr15	52100538	52100539	52100538	-	High_confidence	5	5	8	0.473380	2.807355	chr15	52100279	52100861	LTR|ERVL|MER73	-	chr15	52056674	52100523	AC023906.5|ENST00000558607.1	-	52056674,52100469	52057255,52100523	0.625000
uterus_female_adult_53_years	chr11	76659259	76659325	76659324	-	RAMPAGE_only	5	5	11	0.650898	3.277613	chr11	76659239	76659354	LINE|L2|L2b	+	chr11	76657523	76670000	LRRC32|NM_005512.2	-	76657523,76665870,76669761	76661508,76665958,76670000	1.000000
uterus_female_adult_53_years	chr9	72363556	72363574	72363573	-	High_confidence	4	5	15	0.887588	3.189898	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.733333
uterus_female_adult_53_years	chr11	33711384	33711385	33711384	-	RAMPAGE_only	6	6	9	0.532553	2.503258	chr11	33711302	33711405	LINE|L1|L1MB7	+	chr11	33702691	33710283	AL049629.2|ENST00000533181.1	-	33702691,33709905	33702737,33710283	0.555556
uterus_female_adult_53_years	chr5	171400153	171400204	171400153	+	RAMPAGE_only	16	17	105	6.213115	5.744824	chr5	171399720	171400153	LINE|L1|L1MB2	-	chr5	171387850	171407125	NPM1|ENST00000393820.2	+	171387850,171390050,171391304,171391705,171392709,171392913,171400152,171400838,171405301,171406396	171388006,171390130,171391424,171391799,171392816,171392978,171400210,171400925,171405403,171407125	0.523810
uterus_female_adult_53_years	chr5	170267210	170267290	170267210	-	High_confidence	11	11	41	2.426074	4.735362	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.975610
uterus_female_adult_53_years	chr15	71899710	71899720	71899710	-	High_confidence	2	2	7	0.414208	2.807355	chr15	71899555	71899667	LINE|L2|L2c	-	chr15	71825991	71898838	MYO9A|ENST00000561618.5	-	71825991,71827883,71830108,71848844,71850035,71851252,71852131,71854376,71859734,71862499,71875790,71878039,71879720,71880334,71883593,71888003,71892964,71893678,71897460	71827043,71828026,71830311,71848968,71850167,71851358,71852260,71854569,71859796,71862611,71875838,71878231,71879837,71880558,71883736,71888116,71893177,71893778,71898838	0.714286
uterus_female_adult_53_years	chr16	20679147	20679238	20679147	+	RAMPAGE_only	6	6	44	2.603591	4.784942	chr16	20678043	20681722	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.931818
uterus_female_adult_53_years	chr12	56157338	56157364	56157348	+	High_confidence	11	11	44	2.603591	4.235016	chr12	56157113	56157406	SINE|Alu|AluSq2	+	chr12	56157356	56157976	MYL6B|ENST00000550550.5	+	56157356,56157697,56157881	56157545,56157735,56157976	0.863636
uterus_female_adult_53_years	chr6	136584491	136584494	136584493	-	High_confidence	13	19	20	1.183451	3.511085	chr6	136584318	136584690	LTR|ERVL-MaLR|THE1B	-	chr6	136580333	136584507	MAP3K5|ENST00000463140.1	-	136580333,136583554,136584401	136580406,136583740,136584507	0.500000
uterus_female_adult_53_years	chr14	81427421	81427445	81427421	-	High_confidence	3	3	10	0.591725	2.521928	chr14	81427200	81427412	SINE|tRNA-RTE|MamSINE1	-	chr14	81260649	81427404	STON2|NM_001256430.1	-	81260649,81270669,81276900,81370987,81395893,81398294,81427101,81427300	81261931,81270872,81278739,81371185,81396178,81398580,81427212,81427404	0.900000
uterus_female_adult_53_years	chr11	114295517	114295554	114295541	+	High_confidence	2	2	8	0.473380	2.521641	chr11	114295416	114295728	SINE|Alu|AluY	-	chr11	114295812	114312516	NNMT|NM_006169.2	+	114295812,114297950,114312044	114296710,114298158,114312516	0.875000
uterus_female_adult_53_years	chr1	65422484	65422501	65422500	+	RAMPAGE_only	8	9	16	0.946760	3.456565	chr1	65422070	65422538	LTR|ERVL-MaLR|MLT1C	+	chr1	65420715	65436007	LEPROT|NM_001198681.1	+	65420715,65421327,65425302,65429861,65431802	65420740,65421459,65425378,65430048,65436007	0.750000
uterus_female_adult_53_years	chr5	150125450	150125536	150125450	-	High_confidence	9	10	49	2.899454	5.028890	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150124169	150125520	PDGFRB|ENST00000520229.1	-	150124169,150125444	150124831,150125520	0.510204
uterus_female_adult_53_years	chr12	10363944	10363965	10363964	+	High_confidence	5	6	10	0.591725	2.947703	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.800000
uterus_female_adult_53_years	chr14	67886734	67886756	67886734	+	RAMPAGE_only	35	36	69	4.082904	5.495993	chr14	67886207	67886761	LTR|ERVL-MaLR|MLT1F2	-	chr14	67885732	67887550	RAD51B|ENST00000474051.1	+	67885732,67887020	67885988,67887550	0.550725
uterus_female_adult_53_years	chr16	4669251	4669252	4669251	+	High_confidence	9	9	9	0.532553	2.947703	chr16	4669151	4669448	SINE|Alu|AluSz	+	chr16	4669120	4681580	MGRN1|ENST00000591673.1	+	4669120,4671390,4673497,4677462,4680031,4681549	4669252,4671459,4673657,4677572,4680097,4681580	1.000000
uterus_female_adult_53_years	chr14	51599923	51600012	51599923	-	High_confidence	536	543	2934	173.612190	7.088244	chr14	51599913	51599958	SINE|MIR|MIR3	+	chr14	51546628	51599920	FRMD6-AS2|ENST00000557625.1	-	51546628,51547706,51584165,51599826	51546820,51547883,51584283,51599920	0.694615
uterus_female_adult_53_years	chr9	68975836	68975849	68975842	-	High_confidence	8	8	28	1.656831	3.958229	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.500000
uterus_female_adult_53_years	chr19	52169761	52169762	52169761	-	High_confidence	5	5	8	0.473380	2.807355	chr19	52169654	52169811	SINE|Alu|AluJb	+	chr19	52165183	52169734	ZNF836|ENST00000602187.1	-	52165183,52168057,52169647	52165385,52168152,52169734	0.625000
uterus_female_adult_53_years	chr12	123390725	123390761	123390725	+	High_confidence	10	10	28	1.656831	4.088221	chr12	123390763	123390851	LINE|L1|X9_LINE	+	chr12	123391379	123404918	KMT5A|ENST00000485469.1	+	123391379,123395046,123396344,123403572,123404883	123391430,123395266,123396432,123403632,123404918	0.928571
uterus_female_adult_53_years	chr15	93863039	93863040	93863039	+	High_confidence	5	5	8	0.473380	2.807355	chr15	93862951	93863252	LTR|Gypsy?|LTR88a	+	chr15	93863108	93878356	LINC02207|ENST00000554530.5	+	93863108,93863741,93865380,93869690,93878033	93863216,93864155,93865648,93869833,93878356	0.625000
uterus_female_adult_53_years	chr1	51403418	51403502	51403432	-	RAMPAGE_only	7	7	23	1.360968	3.499228	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.782609
uterus_female_adult_53_years	chr4	152412497	152412529	152412528	-	High_confidence	14	14	42	2.485246	4.660058	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	0.976190
uterus_female_adult_53_years	chr1	19344364	19344389	19344388	-	RAMPAGE_only	20	20	55	3.254489	4.958229	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.963636
uterus_female_adult_53_years	chr3	15341379	15341380	15341379	-	High_confidence	4	4	7	0.414208	2.584963	chr3	15341159	15341407	LINE|L2|L2a	+	chr3	15255649	15341368	SH3BP5|ENST00000408919.7	-	15255649,15256852,15258830,15259760,15262158,15269712,15304102,15330503,15341222	15256303,15257113,15259050,15259803,15262289,15269877,15304299,15330566,15341368	0.571429
uterus_female_adult_53_years	chr9	89479889	89479890	89479889	-	High_confidence	26	26	28	1.656831	3.382568	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89362238	89479890	SEMA4D|ENST00000537934.5	-	89362238,89363429,89363740,89386366,89387385,89388635,89388871,89391263,89392422,89393561,89396736,89399275,89402870,89405350,89418055,89418362,89455887,89479571	89362428,89363527,89363950,89386482,89387608,89388792,89389047,89391415,89392536,89393655,89396835,89399338,89403016,89405699,89418118,89418437,89455953,89479890	0.928571
uterus_female_adult_53_years	chr7	107580245	107580267	107580245	+	High_confidence	631	637	2961	175.209848	6.882279	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.946302
uterus_female_adult_53_years	chr12	643625	643633	643625	-	High_confidence	5	5	22	1.301796	4.106603	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	564580	643665	NINJ2|ENST00000542920.1	-	564580,565216,565949,643510	564681,565401,566178,643665	0.590909
uterus_female_adult_53_years	chr8	143039246	143039267	143039266	+	High_confidence	5	7	17	1.005933	3.499228	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.823529
uterus_female_adult_53_years	chr12	47753900	47753962	47753961	+	High_confidence	6	6	24	1.420141	4.334963	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47753929	47756485	SLC48A1|ENST00000552003.1	+	47753929,47755701	47754027,47756485	0.500000
uterus_female_adult_53_years	chr1	30738948	30739039	30738948	-	High_confidence	3	3	19	1.124278	3.947703	chr1	30738862	30738914	SINE|MIR|MIR	-	chr1	30732604	30739819	STRG.811.1	-	30732604,30735172,30737603,30738939,30739808	30733917,30735265,30737699,30739062,30739819	0.947368
uterus_female_adult_53_years	chr6	130978732	130978739	130978732	-	High_confidence	3	3	6	0.355035	2.584963	chr6	130978657	130979066	LINE|L2|L2c	-	chr6	130956103	130978796	EPB41L2|ENST00000531356.1	-	130956103,130978604	130956499,130978796	0.500000
uterus_female_adult_53_years	chr12	7502492	7502530	7502517	-	High_confidence	8	8	37	2.189383	4.436007	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.918919
uterus_female_adult_53_years	chr8	27977125	27977126	27977125	-	RAMPAGE_only	10	13	15	0.887588	3.324863	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904368	27992624	SCARA5|ENST00000524352.5	-	27904368,27907147,27909662,27921570,27966413,27987503,27992256	27904834,27907246,27909743,27922245,27966542,27987630,27992624	0.666667
uterus_female_adult_53_years	chr12	31119005	31119036	31119035	-	High_confidence	7	7	12	0.710070	3.095795	chr12	31118893	31119042	LTR|ERV1|HERVE-int	+	chr12	31111658	31119110	AC024940.1|ENST00000391394.4	-	31111658,31112980,31114395,31114836,31116356,31117419,31118962	31112288,31113083,31114464,31114927,31116469,31117480,31119110	0.666667
uterus_female_adult_53_years	chr5	74715689	74715690	74715689	+	High_confidence	4	4	7	0.414208	2.584963	chr5	74715734	74716041	SINE|Alu|AluSx1	+	chr5	74715585	74721288	HEXB|ENST00000513336.5	+	74715585,74718290,74718796,74720427,74720642,74721117	74715690,74718363,74718971,74720518,74720747,74721288	0.857143
uterus_female_adult_53_years	chr8	12522810	12522821	12522810	+	RAMPAGE_only	8	8	21	1.242623	3.820889	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.809524
uterus_female_adult_53_years	chr19	11546615	11546616	11546615	+	High_confidence	4	4	7	0.414208	2.584963	chr19	11546335	11546633	SINE|Alu|AluSc	-	chr19	11546674	11549758	CNN1|ENST00000592338.5	+	11546674,11546831,11547796,11549549	11546741,11546969,11547907,11549758	0.714286
uterus_female_adult_53_years	chr19	3062922	3062983	3062939	-	High_confidence	11	14	70	4.142077	5.075362	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052909	3062966	AES|NM_198969.1	-	3052909,3054119,3055663,3056311,3057678,3061159,3062699	3054040,3054194,3055726,3056356,3057742,3061257,3062966	0.985714
uterus_female_adult_53_years	chr5	109383492	109383498	109383497	-	High_confidence	7	7	14	0.828415	2.931209	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.928571
uterus_female_adult_53_years	chr10	88545494	88545522	88545521	-	RAMPAGE_only	4	4	12	0.710070	3.459432	chr10	88545305	88545664	LTR|ERVL-MaLR|THE1B	-	chr10	88284958	88583213	RNLS|ENST00000331772.8	-	88284958,88314465,88362551,88572902,88581566,88582201,88583072	88285506,88314641,88362725,88573061,88581709,88582307,88583213	0.666667
uterus_female_adult_53_years	chr2	232551066	232551106	232551105	+	High_confidence	6	7	15	0.887588	3.456565	chr2	232551133	232551224	SINE|MIR|MIRb	+	chr2	232550806	232567205	EIF4E2|ENST00000454501.1	+	232550806,232556415,232557883,232564246,232566828,232567077	232551218,232556530,232558018,232564351,232566981,232567205	1.000000
uterus_female_adult_53_years	chr9	20658597	20658624	20658607	+	High_confidence	12	17	50	2.958626	4.455649	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.840000
uterus_female_adult_53_years	chr4	79493261	79493298	79493282	+	High_confidence	7	7	18	1.065105	3.836592	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.777778
uterus_female_adult_53_years	chr19	58306104	58306162	58306104	+	High_confidence	3	3	11	0.650898	2.921928	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58306087	58312314	ERVK3-1|ENST00000608004.1	+	58306087,58311198,58312020,58312165	58306216,58311380,58312061,58312314	0.545455
uterus_female_adult_53_years	chr2	174410298	174410352	174410298	+	High_confidence	2	2	11	0.650898	2.732159	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.818182
uterus_female_adult_53_years	chr11	108134268	108134313	108134312	+	RAMPAGE_only	3	3	16	0.946760	3.506891	chr11	108134362	108134663	SINE|Alu|AluSc	+	chr11	108138719	108140171	ACAT1|ENST00000534773.1	+	108138719,108140064	108139041,108140171	0.687500
uterus_female_adult_53_years	chr22	50756926	50756950	50756926	+	High_confidence	3	3	9	0.532553	2.750000	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.777778
uterus_female_adult_53_years	chrX	5726181	5726194	5726193	-	High_confidence	11	12	19	1.124278	3.681881	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.578947
uterus_female_adult_53_years	chr20	44532569	44532570	44532569	+	High_confidence	12	13	17	1.005933	3.750000	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531908	44619037	PKIG|ENST00000372889.5	+	44531908,44582584,44589796,44598615,44614533,44618284	44531978,44582731,44589866,44598890,44614707,44619037	0.823529
uterus_female_adult_53_years	chr6	136584527	136584528	136584527	-	High_confidence	15	16	20	1.183451	3.341446	chr6	136584318	136584690	LTR|ERVL-MaLR|THE1B	-	chr6	136580333	136584507	MAP3K5|ENST00000463140.1	-	136580333,136583554,136584401	136580406,136583740,136584507	0.800000
uterus_female_adult_53_years	chr18	71578935	71578956	71578955	-	High_confidence	5	7	22	1.301796	4.106603	chr18	71578735	71579218	LTR|ERVL|LTR66	-	chr18	71519961	71578956	LINC01541|ENST00000568095.5	-	71519961,71521988,71527776,71531622,71534213,71548598,71578806	71521082,71523256,71527967,71531816,71534296,71548696,71578956	0.909091
uterus_female_adult_53_years	chr19	5775161	5775175	5775174	+	RAMPAGE_only	5	5	13	0.769243	3.188722	chr19	5775110	5775356	LTR|ERVK|LTR3B_	-	chr19	5753510	5778734	CATSPERD|ENST00000309164.11	+	5753510,5754131,5757842,5759085,5763214,5766102,5768167,5770943,5772787,5776160,5778375	5753687,5754245,5757932,5759144,5763293,5766155,5768242,5771072,5772965,5776315,5778734	0.846154
uterus_female_adult_53_years	chr16	761100	761115	761110	+	High_confidence	4	4	12	0.710070	3.022055	chr16	760973	761306	LTR|ERVL|MER54B	+	chr16	761097	766429	MSLN|ENST00000563651.5	+	761097,762671,763232,763641,764022,764646,764906,765109,765690,766058,766334	761174,762765,763276,763691,764143,764726,765036,765223,765790,766237,766429	1.000000
uterus_female_adult_53_years	chr5	122074153	122074156	122074155	-	RAMPAGE_only	4	7	9	0.532553	2.947703	chr5	122074099	122074201	SINE|tRNA|LFSINE_Vert	+	chr5	122065790	122075476	STRG.20228.2	-	122065790,122070052,122070493,122074012,122075403	122066749,122070168,122070589,122074169,122075476	0.888889
uterus_female_adult_53_years	chr4	86453314	86453342	86453324	-	High_confidence	7	8	30	1.775176	4.123231	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86016490	86453325	MAPK10|ENST00000641313.1	-	86016490,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86354529,86453029	86017375,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86354644,86453325	0.800000
uterus_female_adult_53_years	chr15	89200973	89201014	89201013	+	RAMPAGE_only	2	2	9	0.532553	2.750000	chr15	89200800	89201095	SINE|Alu|AluSq	+	chr15	89191091	89202354	STRG.48987.1	+	89191091,89193234,89195226	89191149,89193319,89202354	0.888889
uterus_female_adult_53_years	chr20	18794054	18794086	18794085	+	High_confidence	26	26	84	4.970492	5.363302	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794087	18795759	STRG.57103.1	+	18794087,18794530	18794106,18795759	0.773810
uterus_female_adult_53_years	chr2	200889268	200889318	200889293	-	High_confidence	7	7	34	2.011866	4.536670	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.500000
uterus_female_adult_53_years	chr1	196404228	196404277	196404272	-	RAMPAGE_only	8	8	36	2.130211	3.869685	chr1	196404113	196404446	LINE|L2|L2c	+	chr1	196225782	196465387	KCNT2|ENST00000498426.5	-	196225782,196235985,196258193,196280859,196282272,196285656,196305233,196315891,196317173,196331155,196333846,196340340,196342078,196373139,196398562,196423049,196425851,196428104,196429576,196465292	196228335,196236070,196258494,196280988,196282356,196285758,196305345,196316026,196317269,196331261,196334060,196340570,196342228,196373248,196398671,196423113,196425988,196428269,196429757,196465387	0.833333
uterus_female_adult_53_years	chr11	65430683	65430715	65430714	+	RAMPAGE_only	7	7	19	1.124278	3.787144	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65427104	65444892	STRG.38652.2	+	65427104,65444781	65444029,65444892	0.947368
uterus_female_adult_53_years	chrX	16712878	16712933	16712879	-	High_confidence	5	8	31	1.834348	4.453881	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.967742
uterus_female_adult_53_years	chr17	68413629	68413644	68413629	+	High_confidence	2	2	7	0.414208	2.521641	chr17	68408123	68414142	LINE|L1|L1PA3	-	chr17	68413739	68428763	AC007780.1|ENST00000592030.1	+	68413739,68413910,68420188,68428636	68413795,68414182,68420506,68428763	0.571429
uterus_female_adult_53_years	chr2	48479481	48479482	48479481	+	High_confidence	26	27	32	1.893521	4.413910	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48479536	48515240	STRG.6328.1	+	48479536,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515240	0.906250
uterus_female_adult_53_years	chr1	28617958	28617967	28617958	-	RAMPAGE_only	3	3	7	0.414208	2.807355	chr1	28617880	28617910	SINE|MIR|MIR	-	chr1	28603100	28643005	TAF12|ENST00000263974.4	-	28603100,28605371,28613246,28617952,28621913,28642654	28603574,28605460,28613361,28618030,28622165,28643005	1.000000
uterus_female_adult_53_years	chr16	20676161	20676162	20676161	-	High_confidence	10	11	14	0.828415	3.521641	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.928571
uterus_female_adult_53_years	chr18	7946878	7946898	7946878	+	High_confidence	4	4	10	0.591725	3.321928	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	1.000000
uterus_female_adult_53_years	chr2	232816727	232816740	232816739	+	RAMPAGE_only	4	4	12	0.710070	3.251629	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232815384	232819996	STRG.9919.1	+	232815384,232816870,232819826	232815737,232817032,232819996	1.000000
uterus_female_adult_53_years	chr1	20685297	20685320	20685306	-	High_confidence	7	7	20	1.183451	3.616349	chr1	20685231	20685572	LINE|L2|L2b	+	chr1	20666213	20685283	KIF17|ENST00000462858.5	-	20666213,20670420,20671937,20682652,20684808,20685251	20666331,20670491,20672196,20682884,20685020,20685283	0.600000
uterus_female_adult_53_years	chr11	65430790	65430839	65430815	+	RAMPAGE_only	9	9	44	2.603591	3.876356	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65427104	65444892	STRG.38652.2	+	65427104,65444781	65444029,65444892	0.931818
uterus_female_adult_53_years	chr19	10555125	10555126	10555125	-	RAMPAGE_only	11	11	12	0.710070	3.095795	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	0.916667
uterus_female_adult_53_years	chr9	16226917	16226918	16226917	-	RAMPAGE_only	6	6	9	0.532553	3.000000	chr9	16223083	16229454	LINE|L1|L1PA7	+	chr9	16203934	16253107	C9orf92|NM_001271829.1	-	16203934,16215215,16215771,16253039	16204038,16215279,16215899,16253107	0.777778
uterus_female_adult_53_years	chr8	98883804	98883805	98883804	-	High_confidence	8	8	10	0.591725	2.846439	chr8	98883703	98883915	LTR|ERVL-MaLR|MLT1O	-	chr8	98875256	98883795	STK3|ENST00000523567.1	-	98875256,98883646	98875694,98883795	0.800000
uterus_female_adult_53_years	chr2	159428345	159428357	159428356	-	RAMPAGE_only	10	10	20	1.183451	4.142664	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.700000
uterus_female_adult_53_years	chr1	1655461	1655478	1655461	-	RAMPAGE_only	3	3	9	0.532553	3.169925	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.888889
uterus_female_adult_53_years	chr14	21020127	21020139	21020127	-	High_confidence	2	2	6	0.355035	2.584963	chr14	21020013	21020322	SINE|Alu|AluSg4	+	chr14	21017994	21020109	NDRG2|ENST00000557416.5	-	21017994,21018203,21018456,21018626,21018762,21019115,21019638,21019919	21018038,21018239,21018504,21018663,21018814,21019160,21019742,21020109	0.833333
uterus_female_adult_53_years	chr19	11547613	11547632	11547631	+	High_confidence	7	7	15	0.887588	3.056565	chr19	11547428	11547728	SINE|Alu|AluY	+	chr19	11547839	11550321	CNN1|ENST00000588935.1	+	11547839,11549322,11549549,11550032	11547907,11549469,11549745,11550321	0.800000
uterus_female_adult_53_years	chr2	86482602	86482671	86482602	+	RAMPAGE_only	3	3	22	1.301796	3.916127	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.818182
uterus_female_adult_53_years	chr1	204870094	204870100	204870094	+	High_confidence	3	3	9	0.532553	2.947703	chr1	204870144	204870213	LINE|CR1|Plat_L3	+	chr1	204870830	205018371	NFASC|ENST00000404076.5	+	204870830,204920631,204944225,204952010,204954187,204954828,204957655,204968248,204968797,204970615,204973275,204974178,204974656,204975270,204976670,204978967,204979361,204980369,204981797,204984026,204985909,204987417,204988632,204991291,205009556,205012796,205016307	204871053,204920740,204944406,204952116,204954384,204954951,204957826,204968360,204968982,204970747,204973419,204974290,204974823,204975418,204976795,204979069,204979559,204980440,204982020,204984142,204986114,204987540,204988806,204991306,205009688,205012866,205018371	0.666667
uterus_female_adult_53_years	chr19	9140393	9140428	9140393	+	High_confidence	39	39	119	7.041531	5.748994	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.756303
uterus_female_adult_53_years	chr12	79598026	79598044	79598041	-	High_confidence	3	3	9	0.532553	2.750000	chr12	79597796	79598259	LTR|ERVL-MaLR|MLT1F	-	chr12	79574978	79597982	PAWR|ENST00000548075.5	-	79574978,79592610,79594328,79596510,79597815	79575067,79592693,79594433,79596658,79597982	0.777778
uterus_female_adult_53_years	chr6	31587201	31587275	31587201	+	High_confidence	8	8	32	1.893521	3.952820	chr6	31587184	31587293	SINE|MIR|MIR3	-	chr6	31587199	31588909	LST1|ENST00000303757.12	+	31587199,31587640,31588517	31587318,31587733,31588909	1.000000
uterus_female_adult_53_years	chr18	36122242	36122249	36122242	-	High_confidence	3	3	7	0.414208	2.584963	chr18	36122231	36122262	LINE|RTE-BovB|MamRTE1	-	chr18	36111055	36122115	SLC39A6|ENST00000586829.1	-	36111055,36112500,36114096,36116673,36122051	36111249,36112581,36114474,36116779,36122115	0.857143
uterus_female_adult_53_years	chr12	12927723	12927734	12927733	+	High_confidence	4	4	11	0.650898	2.921928	chr12	12927677	12927956	LTR|ERV1|MER50	+	chr12	12927757	12980562	GPRC5D-AS1|ENST00000543515.6	+	12927757,12979523,12979999	12927803,12979622,12980562	0.727273
uterus_female_adult_53_years	chr8	143281661	143281687	143281686	-	High_confidence	17	18	53	3.136144	4.878563	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280154	143281700	MINCR|NR_120682.1	-	143280154,143280881,143281481	143280515,143280997,143281700	0.566038
uterus_female_adult_53_years	chr11	65430548	65430609	65430606	+	RAMPAGE_only	9	9	52	3.076971	4.818172	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65427104	65444892	STRG.38652.2	+	65427104,65444781	65444029,65444892	0.961538
uterus_female_adult_53_years	chr21	33931124	33931152	33931146	+	High_confidence	5	5	13	0.769243	2.855389	chr21	33925606	33931606	LINE|L1|L1PA2	-	chr21	33931159	33977691	LINC00649|ENST00000427447.5	+	33931159,33945809,33969236	33931742,33945895,33977691	0.846154
uterus_female_adult_53_years	chr15	90420200	90420224	90420200	+	RAMPAGE_only	3	3	11	0.650898	3.459432	chr15	90420174	90420357	SINE|MIR|MIRb	-	chr15	90388276	90440528	IQGAP1|ENST00000560418.1	+	90388276,90426109,90429588,90431220,90433718,90439331,90440501	90388396,90426266,90429666,90431252,90433795,90439399,90440528	0.818182
uterus_female_adult_53_years	chr21	8817798	8817805	8817798	+	RAMPAGE_only	6	7	10	0.591725	2.725481	chr21	8817416	8819072	LINE|L1|L1PB	-	chr21	8857259	8880976	CR381670.1|ENST00000624291.1	+	8857259,8859996,8864000,8866870,8866990,8873016,8877130,8878663,8880011	8857318,8860066,8864082,8866899,8867063,8873087,8877294,8878843,8880976	0.900000
uterus_female_adult_53_years	chr20	45833305	45833321	45833307	-	High_confidence	28	42	107	6.331460	4.466291	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	0.962617
uterus_female_adult_53_years	chr6	46658576	46658593	46658592	+	High_confidence	3	3	7	0.414208	2.521641	chr6	46658495	46658626	LINE|L2|L2c	-	chr6	46658662	46668747	SLC25A27|ENST00000603486.5	+	46658662,46662375,46664773,46668708	46659046,46662498,46664886,46668747	0.857143
uterus_female_adult_53_years	chr11	17282907	17282940	17282914	+	RAMPAGE_only	3	3	9	0.532553	2.503258	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.555556
uterus_female_adult_53_years	chr2	189782421	189782429	189782421	-	High_confidence	2	2	8	0.473380	2.807355	chr2	189782212	189782378	LINE|L1|L1MB3	-	chr2	189770323	189783382	ORMDL1|ENST00000325795.7	-	189770323,189775564,189782421	189771902,189775716,189783382	0.750000
uterus_female_adult_53_years	chr17	41871705	41871748	41871745	-	High_confidence	3	3	9	0.532553	2.947703	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41868710	41872182	STRG.52385.1	-	41868710,41869042,41869473,41871688,41872031	41868785,41869125,41869587,41871832,41872182	0.888889
uterus_female_adult_53_years	chrX	103584963	103584964	103584963	+	High_confidence	4	4	7	0.414208	2.807355	chrX	103584608	103585055	LTR|ERV1|MER89	-	chrX	103585484	103587736	TCEAL4|NM_001305841.1	+	103585484,103586653	103585624,103587736	0.714286
uterus_female_adult_53_years	chr2	218287279	218287306	218287279	-	High_confidence	26	26	53	3.136144	4.612460	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.905660
uterus_female_adult_53_years	chrX	115647964	115647988	115647979	+	RAMPAGE_only	3	3	13	0.769243	3.188722	chrX	115648020	115648262	SINE|MIR|MIRb	+	chrX	115622059	115650857	PLS3|ENST00000420625.6	+	115622059,115622243,115629197,115629834,115633999,115634880,115636835,115640109,115640407,115643312,115645020,115646071,115646401,115647549,115647892,115649428	115622064,115622409,115629327,115629967,115634081,115635046,115636978,115640136,115640503,115643508,115645099,115646186,115646535,115647673,115648017,115650857	0.923077
uterus_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	686	760	2191	129.647003	5.461427	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.957097
uterus_female_adult_53_years	chr17	35267843	35267868	35267852	+	RAMPAGE_only	3	3	19	1.124278	3.572431	chr17	35267749	35268438	LINE|L1|HAL1b	+	chr17	35264781	35268747	STRG.52174.2	+	35264781,35265071,35268039	35264903,35267976,35268747	0.631579
uterus_female_adult_53_years	chr21	36005313	36005320	36005319	+	High_confidence	16	16	29	1.716003	4.208966	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.931034
uterus_female_adult_53_years	chr21	16256040	16256130	16256129	+	High_confidence	4	4	23	1.360968	3.202546	chr21	16256068	16256214	DNA|hAT-Tip100|MamTip2	-	chr21	16256024	16256694	STRG.58222.1	+	16256024	16256694	0.913043
uterus_female_adult_53_years	chr22	39021125	39021163	39021125	+	High_confidence	3	3	13	0.769243	3.180833	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
uterus_female_adult_53_years	chr6	31587007	31587014	31587009	+	High_confidence	10	16	23	1.360968	3.975418	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.913043
uterus_female_adult_53_years	chr7	80369531	80369569	80369531	+	High_confidence	6	6	29	1.716003	4.487123	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.931034
uterus_female_adult_53_years	chr3	37058886	37058907	37058886	-	RAMPAGE_only	3	3	6	0.355035	2.584963	chr3	37058882	37058925	SINE|MIR|MIRc	+	chr3	37053003	37065334	LRRFIP2|ENST00000460646.5	-	37053003,37054410,37055085,37058789,37063741	37053961,37054515,37055165,37058910,37065334	1.000000
uterus_female_adult_53_years	chr8	97930978	97931024	97930983	+	High_confidence	3	3	16	0.946760	3.625000	chr8	97931029	97931087	LINE|RTE-BovB|MamRTE1	+	chr8	97931340	98036214	MATN2|ENST00000518154.5	+	97931340,97941776,97978885,97994479,98003660,98007104,98007478,98016539,98017993,98021204,98027415,98030461,98032245,98033098,98033560,98035656	97931522,97941899,97979008,97994602,98003783,98007227,98007601,98016662,98018116,98021327,98027829,98030614,98032317,98033176,98033659,98036214	0.562500
uterus_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	3037	3059	3739	221.246073	5.825526	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.916555
uterus_female_adult_53_years	chr6	110330091	110330111	110330110	-	RAMPAGE_only	5	6	13	0.769243	3.418296	chr6	110329832	110331376	LINE|L1|L1MD2	+	chr6	110245927	110358272	METTL24|ENST00000338882.4	-	110245927,110298921,110315341,110322773,110357954	110246260,110299150,110315481,110322872,110358272	0.769231
uterus_female_adult_53_years	chr21	16353910	16353911	16353910	+	RAMPAGE_only	41	41	42	2.485246	4.125129	chr21	16353716	16354066	LTR|ERVL-MaLR|THE1A	+	chr21	16330603	16607268	MIR99AHG|ENST00000602339.5	+	16330603,16391613,16487489,16537378,16606993	16330711,16391685,16487538,16537439,16607268	0.857143
uterus_female_adult_53_years	chr15	34588450	34588453	34588452	-	High_confidence	6	11	11	0.650898	3.095795	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.818182
uterus_female_adult_53_years	chr11	57568212	57568213	57568212	-	High_confidence	9	9	11	0.650898	3.095795	chr11	57568014	57568171	DNA|hAT-Tip100?|MamRep1879	-	chr11	57551655	57568284	UBE2L6|ENST00000340573.8	-	57551655,57554436,57560336,57567848	57552509,57554623,57560432,57568284	1.000000
uterus_female_adult_53_years	chr8	97931067	97931089	97931070	+	High_confidence	4	4	11	0.650898	2.921928	chr8	97931029	97931087	LINE|RTE-BovB|MamRTE1	+	chr8	97931340	98036214	MATN2|ENST00000518154.5	+	97931340,97941776,97978885,97994479,98003660,98007104,98007478,98016539,98017993,98021204,98027415,98030461,98032245,98033098,98033560,98035656	97931522,97941899,97979008,97994602,98003783,98007227,98007601,98016662,98018116,98021327,98027829,98030614,98032317,98033176,98033659,98036214	0.727273
uterus_female_adult_53_years	chr3	52255676	52255761	52255721	-	RAMPAGE_only	6	8	34	2.011866	4.028946	chr3	52255678	52255749	SINE|MIR|MIR	+	chr3	52254959	52268138	WDR82|ENST00000487402.1	-	52254959,52258535,52259196,52259716,52260384,52261379,52266951	52257519,52258678,52259266,52259872,52260501,52261479,52268138	0.911765
uterus_female_adult_53_years	chr8	53523862	53523886	53523862	-	High_confidence	2	2	7	0.414208	2.584963	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	0.571429
uterus_female_adult_53_years	chr16	20676191	20676218	20676201	-	High_confidence	13	13	25	1.479313	4.349649	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.720000
uterus_female_adult_53_years	chrX	5726324	5726387	5726324	-	High_confidence	39	41	69	4.082904	4.512856	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.884058
uterus_female_adult_53_years	chr9	128473668	128473688	128473687	+	RAMPAGE_only	4	4	10	0.591725	2.503258	chr9	128473736	128473912	SINE|MIR|MIRb	+	chr9	128482885	128492450	STRG.34109.1	+	128482885,128483937,128484700,128485364,128487889,128492425	128482887,128484054,128484886,128485474,128488025,128492450	0.600000
uterus_female_adult_53_years	chr6	113873339	113873347	113873346	-	High_confidence	15	18	49	2.899454	4.874615	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.775510
uterus_female_adult_53_years	chr12	122064332	122064376	122064375	+	RAMPAGE_only	21	21	51	3.017799	5.010827	chr12	122064181	122064568	LTR|ERVL-MaLR|MLT1K	+	chr12	122063305	122068616	AC156455.1|ENST00000538790.1	+	122063305,122064549,122068027,122068288	122063531,122064682,122068191,122068616	0.882353
uterus_female_adult_53_years	chr12	15168265	15168281	15168277	+	High_confidence	72	73	252	14.911476	4.303357	chr12	15168314	15168522	SINE|MIR|MIRc	+	chr12	15168159	15169323	STRG.40816.2	+	15168159,15168842	15168760,15169323	0.984127
uterus_female_adult_53_years	chr13	95533899	95533920	95533899	-	High_confidence	3	3	8	0.473380	2.521641	chr13	95533829	95534213	LINE|L2|L2b	+	chr13	95479443	95533910	CLDN10-AS1|NR_046533.1	-	95479443,95497058,95528491,95533697	95479962,95497125,95528587,95533910	0.500000
uterus_female_adult_53_years	chr1	54277364	54277365	54277364	-	RAMPAGE_only	20	21	23	1.360968	4.061482	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.869565
uterus_female_adult_53_years	chr16	8842153	8842215	8842153	+	High_confidence	10	10	31	1.834348	4.478232	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	1.000000
uterus_female_adult_53_years	chr19	48868595	48868631	48868595	-	High_confidence	184	192	866	51.243407	7.563563	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48837096	48868627	PLEKHA4|NM_020904.2	-	48837096,48838016,48839204,48841148,48845369,48845516,48847899,48852227,48853681,48854006,48854216,48857421,48858859,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48837551,48838129,48839263,48841310,48845446,48845616,48848040,48852326,48853831,48854087,48854264,48857496,48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868627	0.997691
uterus_female_adult_53_years	chr2	201116002	201116029	201116007	+	High_confidence	4	4	18	1.065105	3.101881	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.888889
uterus_female_adult_53_years	chr16	65053820	65053831	65053820	-	High_confidence	4	4	8	0.473380	2.521641	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	64946807	65053991	STRG.50595.2	-	64946807,64950766,64971578,64971930,64972903,64982047,64988156,64991767,64992914,64998561,65004641,65053803	64948099,64951018,64971696,64972064,64973040,64982301,64988344,64991935,64993034,64998856,65005041,65053991	0.750000
uterus_female_adult_53_years	chr8	32927967	32927977	32927976	+	RAMPAGE_only	31	32	65	3.846214	5.218956	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.753846
uterus_female_adult_53_years	chr11	65016272	65016273	65016272	+	RAMPAGE_only	4	6	6	0.355035	2.584963	chr11	65016219	65016460	LINE|L2|L2a	-	chr11	65497687	65506431	MALAT1|ENST00000619449.2	+	65497687,65498681,65498968,65506259	65497865,65498734,65503905,65506431	1.000000
uterus_female_adult_53_years	chr6	87210656	87210673	87210672	+	High_confidence	3	3	7	0.414208	2.521641	chr6	87210539	87210803	SINE|Alu|AluY	+	chr6	87210714	87234027	STRG.23220.1	+	87210714,87213901,87214997,87215902,87216298,87218595,87233324	87210807,87214069,87215142,87216057,87216377,87218731,87234027	1.000000
uterus_female_adult_53_years	chr17	41871774	41871791	41871774	-	High_confidence	5	5	12	0.710070	2.855389	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41868710	41872182	STRG.52385.1	-	41868710,41869042,41869473,41871688,41872031	41868785,41869125,41869587,41871832,41872182	1.000000
uterus_female_adult_53_years	chr12	9407471	9407507	9407506	-	RAMPAGE_only	15	20	47	2.781109	4.466051	chr12	9407304	9407906	LTR|ERV1|HERVE-int	+	chr12	9398354	9414851	AC141557.1|ENST00000540982.1	-	9398354,9400235,9402426,9414802	9398484,9400326,9402556,9414851	0.617021
uterus_female_adult_53_years	chr19	55094809	55094819	55094813	-	High_confidence	3	3	11	0.650898	3.277613	chr19	55094806	55095145	LINE|L2|L2a	-	chr19	55090913	55094796	PPP1R12C|ENST00000591938.5	-	55090913,55091649,55091858,55092221,55092441,55092621,55093185,55094344,55094660	55091558,55091700,55091909,55092326,55092544,55092653,55093233,55094435,55094796	0.818182
uterus_female_adult_53_years	chr4	4269609	4269614	4269609	-	High_confidence	39	42	108	6.390633	3.793686	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.962963
uterus_female_adult_53_years	chr5	139364707	139364741	139364740	+	RAMPAGE_only	5	5	20	1.183451	4.021928	chr5	139364659	139364781	DNA|hAT-Ac|OldhAT1	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.950000
uterus_female_adult_53_years	chr13	20439859	20439892	20439859	-	High_confidence	4	4	12	0.710070	2.751629	chr13	20439856	20440379	LTR|ERV1|MER39	+	chr13	20431617	20439904	CRYL1|ENST00000645525.1	-	20431617,20439592	20432296,20439904	0.583333
uterus_female_adult_53_years	chr19	58314809	58314821	58314809	+	RAMPAGE_only	2	2	7	0.414208	2.584963	chr19	58314839	58315267	LTR|ERVK|LTR3	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.714286
uterus_female_adult_53_years	chr8	144106344	144106357	144106344	+	High_confidence	4	4	13	0.769243	3.251629	chr8	144106369	144106439	LINE|CR1|L3b	+	chr8	144106344	144107392	STRG.31302.1	+	144106344,144106554,144106834,144107087	144106464,144106674,144106963,144107392	0.846154
uterus_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	488	488	488	28.876192	4.123557	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.979508
uterus_female_adult_53_years	chr17	4143196	4143209	4143199	+	High_confidence	23	23	73	4.319594	4.886283	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	0.986301
uterus_female_adult_53_years	chr20	3795740	3795781	3795750	+	High_confidence	20	21	71	4.201249	5.344659	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	0.985915
uterus_female_adult_53_years	chr16	20674861	20674892	20674861	+	High_confidence	3	4	16	0.946760	3.155639	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.500000
uterus_female_adult_53_years	chr5	180830987	180831010	180831009	+	High_confidence	6	6	27	1.597658	4.132944	chr5	180831009	180831181	LTR|ERV1|MER67A	-	chr5	180831023	180835726	LINC00847|ENST00000502162.2	+	180831023,180832672,180834311	180831229,180832860,180835726	0.851852
uterus_female_adult_53_years	chr21	28090313	28090340	28090313	+	High_confidence	2	2	7	0.414208	2.521641	chr21	28087585	28090806	LINE|L1|L1PB1	-	chr21	28090402	28103264	LOC284825|NR_126011.1	+	28090402,28101265,28102549	28090521,28101319,28103264	1.000000
uterus_female_adult_53_years	chr2	182928785	182928789	182928788	-	RAMPAGE_only	8	9	18	1.065105	3.410417	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.666667
uterus_female_adult_53_years	chr12	15001766	15001839	15001838	+	High_confidence	30	37	165	9.763467	6.034121	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.703030
uterus_female_adult_53_years	chr11	13419689	13419730	13419729	-	RAMPAGE_only	3	3	11	0.650898	2.594907	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	1.000000
uterus_female_adult_53_years	chr9	121313932	121314021	121314002	+	RAMPAGE_only	53	53	289	17.100860	5.569204	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	1.000000
uterus_female_adult_53_years	chr1	204116631	204116632	204116631	+	High_confidence	7	8	11	0.650898	3.121928	chr1	204116612	204116693	LINE|RTE-BovB|MamRTE1	+	chr1	204116506	204122917	SOX13|ENST00000480326.1	+	204116506,204117121,204117592,204121870,204122236,204122853	204116679,204117190,204117707,204121985,204122399,204122917	0.727273
uterus_female_adult_53_years	chr11	17225031	17225032	17225031	+	RAMPAGE_only	5	5	7	0.414208	2.807355	chr11	17224821	17225165	LINE|L2|L2a	+	chr11	17208152	17295424	NUCB2|ENST00000528644.5	+	17208152,17282788,17295323	17208426,17282943,17295424	0.714286
uterus_female_adult_53_years	chr11	86669525	86669526	86669525	-	RAMPAGE_only	9	9	10	0.591725	2.641604	chr11	86669355	86669722	LTR|ERVL-MaLR|THE1D	-	chr11	86446892	86671965	ME3|ENST00000530520.5	-	86446892,86448149,86449888,86450300,86465090,86487336,86497962,86508791,86556552,86559689,86671761	86447207,86448255,86450002,86450398,86465200,86487440,86498124,86508867,86556702,86559823,86671965	0.700000
uterus_female_adult_53_years	chr14	77736978	77737003	77736987	-	High_confidence	5	5	14	0.828415	3.324863	chr14	77736583	77736971	LINE|L1|L1ME1	-	chr14	77730855	77737007	SNW1|ENST00000553565.1	-	77730855,77732484,77734946,77735936,77736970	77731129,77732601,77735012,77736006,77737007	0.857143
uterus_female_adult_53_years	chr1	179118680	179118735	179118734	-	RAMPAGE_only	3	3	9	0.532553	2.503258	chr1	179118593	179118709	LINE|RTE-BovB|MamRTE1	-	chr1	179107717	179143044	ABL2|ENST00000504405.5	-	179107717,179109207,179110281,179112308,179114877,179117331,179118586,179120189,179121594,179126376,179131310,179142932	179108898,179109441,179110455,179112398,179115030,179117516,179118764,179120274,179121867,179126672,179131481,179143044	0.666667
uterus_female_adult_53_years	chr14	67886358	67886385	67886384	+	High_confidence	9	11	23	1.360968	3.624680	chr14	67886207	67886761	LTR|ERVL-MaLR|MLT1F2	-	chr14	67886531	68468250	STRG.46078.3	+	67886531,67887020,68291883,68411423,68468171	67886629,67887204,68291980,68411527,68468250	0.652174
uterus_female_adult_53_years	chr14	100906116	100906117	100906116	+	High_confidence	6	6	6	0.355035	2.584963	chr14	100905713	100906123	LINE|L1|L1MC5	-	chr14	100907042	100935999	MEG8|ENST00000556475.1	+	100907042,100910232,100913431,100935771	100907132,100910304,100913521,100935999	0.666667
uterus_female_adult_53_years	chr1	23417917	23417997	23417917	-	High_confidence	16	16	62	3.668697	4.972037	chr1	23417794	23417908	LINE|L2|L2b	-	chr1	23384271	23418054	STRG.607.1	-	23384271,23387272,23393878,23397544,23397791,23408663,23417248,23417903	23384417,23387419,23394033,23397601,23397955,23408726,23417390,23418054	1.000000
uterus_female_adult_53_years	chr4	81154221	81154248	81154221	-	High_confidence	7	7	21	1.242623	3.684184	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.952381
uterus_female_adult_53_years	chr1	205099775	205099803	205099802	-	High_confidence	3	3	8	0.473380	3.000000	chr1	205099767	205099820	LINE|RTE-BovB|MamRTE1	-	chr1	205086141	205099786	STRG.4514.1	-	205086141,205094872,205096681,205097325,205098988,205099740	205088815,205095064,205096911,205097395,205099106,205099786	1.000000
uterus_female_adult_53_years	chr11	67886495	67886518	67886517	+	High_confidence	7	7	16	0.946760	2.606239	chr11	67885784	67888955	LTR|ERV1|HERVS71-int	-	chr11	67886476	67894093	AP003716.1|ENST00000529069.5	+	67886476,67888152,67893878	67886689,67888324,67894093	0.937500
uterus_female_adult_53_years	chr4	87499820	87499845	87499820	-	RAMPAGE_only	3	3	13	0.769243	3.392747	chr4	87499693	87499843	LINE|RTE-BovB|MamRTE1	-	chr4	87494416	87528619	SPARCL1|ENST00000535835.5	-	87494416,87494980,87499520,87504821,87528554	87494598,87495127,87499585,87504923,87528619	0.769231
uterus_female_adult_53_years	chr20	46363963	46363964	46363963	-	High_confidence	8	8	10	0.591725	3.321928	chr20	46363820	46363964	LINE|L2|L2a	+	chr20	46349527	46364458	SLC35C2|NM_001281460.1	-	46349527,46350760,46352050,46354881,46355072,46355801,46356573,46357622,46358386,46363085,46364370	46350524,46350890,46352226,46354965,46355241,46355874,46356637,46357773,46358958,46363222,46364458	0.500000
uterus_female_adult_53_years	chr12	15780781	15780812	15780781	-	High_confidence	2	2	8	0.473380	2.807355	chr12	15780696	15780826	LINE|L2|L2c	+	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.625000
uterus_female_adult_53_years	chr3	143043229	143043274	143043273	+	RAMPAGE_only	5	5	16	0.946760	3.452820	chr3	143043314	143043694	LINE|L2|L2b	+	chr3	143036082	143056846	U2SURP|ENST00000467348.1	+	143036082,143037178,143038107,143038893,143043116,143050938,143053675,143056311	143036104,143037335,143038203,143038960,143043276,143051049,143053794,143056846	0.625000
uterus_female_adult_53_years	chr9	39810033	39810099	39810033	-	High_confidence	15	15	62	3.668697	5.214288	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.838710
uterus_female_adult_53_years	chr18	55893231	55893258	55893231	+	High_confidence	2	2	15	0.887588	3.456565	chr18	55887412	55893439	LINE|L1|L1PA3	-	chr18	55893037	56023462	AC009271.1|ENST00000589440.1	+	55893037,56017727,56023401	55893442,56017779,56023462	0.533333
uterus_female_adult_53_years	chr9	39809852	39809865	39809858	-	High_confidence	6	8	22	1.301796	3.684184	chr9	39809833	39809921	SINE|MIR|MIRb	+	chr9	39803495	39810159	GLIDR|NR_126046.1	-	39803495,39809485	39803859,39810159	0.681818
uterus_female_adult_53_years	chr14	81170402	81170420	81170412	-	High_confidence	4	5	16	0.946760	3.452820	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.937500
uterus_female_adult_53_years	chr3	39407631	39407783	39407682	+	High_confidence	18	20	135	7.988291	5.909978	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.962963
uterus_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	35	37	37	2.189383	3.758592	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.945946
uterus_female_adult_53_years	chr7	131108707	131108708	131108707	-	High_confidence	9	9	10	0.591725	2.947703	chr7	131108677	131108859	DNA|PiggyBac?|UCON29	-	chr7	130944292	131108099	LINC-PINT|ENST00000643135.1	-	130944292,130978507,130984052,131052424,131106544,131107719	130945835,130978528,130984109,131052555,131106617,131108099	0.500000
uterus_female_adult_53_years	chr21	29077486	29077487	29077486	+	High_confidence	17	17	21	1.242623	3.426367	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.571429
uterus_female_adult_53_years	chr1	54413479	54413493	54413492	-	High_confidence	7	7	23	1.360968	3.762267	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54243236	54413479	SSBP3|ENST00000525990.1	-	54243236,54251615,54251793,54257126,54281437,54401860,54404575,54404857,54413355	54243299,54251692,54251860,54257186,54281527,54401945,54404637,54404930,54413479	0.565217
uterus_female_adult_53_years	chr3	195688575	195688601	195688575	+	High_confidence	1	1	9	0.532553	3.000000	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688425	195699116	MUC20-OT1|ENST00000626870.2	+	195688425,195689338,195689545,195696360,195699029	195688797,195689438,195689608,195696589,195699116	0.555556
uterus_female_adult_53_years	chr6	30493051	30493188	30493185	+	RAMPAGE_only	10	11	77	4.556284	5.437250	chr6	30493011	30493324	SINE|Alu|AluSc8	+	chr6	30489466	30494205	HLA-E|ENST00000376630.4	+	30489466,30489725,30490239,30491136,30491536,30492403,30492540,30492748	30489595,30489995,30490515,30491412,30491653,30492436,30492583,30494205	1.000000
uterus_female_adult_53_years	chr5	140655869	140655989	140655988	+	RAMPAGE_only	11	16	101	5.976425	5.436428	chr5	140656032	140656202	LINE|L2|L2b	+	chr5	140658735	140662214	IK|ENST00000610522.4	+	140658735,140658938,140659314,140659755,140660114,140660757,140661619,140661632,140661898,140662178	140658776,140659164,140659333,140659834,140660195,140660815,140661631,140661708,140662007,140662214	0.980198
uterus_female_adult_53_years	chr18	46087118	46087174	46087118	-	High_confidence	15	15	35	2.071038	4.631293	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.742857
uterus_female_adult_53_years	chr1	238486003	238486043	238486034	-	High_confidence	13	23	120	7.100703	5.703553	chr1	238485817	238486145	LTR|ERV1|MER61A	-	chr1	238480372	238486038	LINC01139|ENST00000648241.1	-	238480372,238485811	238481681,238486038	0.741667
uterus_female_adult_53_years	chr2	76445409	76445410	76445409	-	High_confidence	26	26	33	1.952693	3.945465	chr2	76445391	76445484	LTR|ERV1|MER66B	+	chr2	76445078	76445410	RN7SKP203|ENST00000363618.1	-	76445078	76445410	0.969697
uterus_female_adult_53_years	chr10	45000453	45000515	45000503	+	High_confidence	13	13	49	2.899454	4.928799	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	1.000000
uterus_female_adult_53_years	chr4	86453386	86453399	86453386	-	High_confidence	4	4	9	0.532553	2.725481	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015268	86453387	MAPK10|ENST00000641657.1	-	86015268,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194308,86354529,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86453387	0.888889
uterus_female_adult_53_years	chr1	155679929	155679930	155679929	-	High_confidence	13	13	13	0.769243	2.507380	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	1.000000
uterus_female_adult_53_years	chr16	4239748	4239749	4239748	-	High_confidence	10	10	13	0.769243	2.855389	chr16	4239663	4239837	SINE|MIR|MIR3	+	chr16	4191809	4239743	SRL|ENST00000537996.1	-	4191809,4195552,4197798,4203165,4204532,4239633	4192964,4195786,4197915,4203261,4204634,4239743	0.615385
uterus_female_adult_53_years	chr6	43013375	43013393	43013392	-	High_confidence	13	13	21	1.242623	4.201841	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
uterus_female_adult_53_years	chr12	15168602	15168626	15168602	+	High_confidence	4	4	15	0.887588	3.640224	chr12	15168615	15168727	LINE|RTE-BovB|MamRTE1	+	chr12	15168159	15169323	STRG.40816.2	+	15168159,15168842	15168760,15169323	0.733333
uterus_female_adult_53_years	chr10	95503052	95503078	95503052	-	High_confidence	10	10	44	2.603591	4.373680	chr10	95503034	95503135	LTR|ERV1?|LTR103b_Mam	-	chr10	95502555	95502964	STRG.36567.1	-	95502555	95502964	0.886364
uterus_female_adult_53_years	chr5	32403108	32403116	32403108	-	RAMPAGE_only	8	8	14	0.828415	3.180833	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.857143
uterus_female_adult_53_years	chr4	69051229	69051230	69051229	+	High_confidence	33	33	39	2.307728	4.932138	chr4	69050859	69051337	LTR|ERV1|LTR2B	+	chr4	69051362	69108227	UGT2B7|ENST00000502942.5	+	69051362,69089471,69098539,69102806,69107174,69108102	69051602,69089603,69098688,69102938,69107262,69108227	0.538462
uterus_female_adult_53_years	chr4	88456775	88456797	88456796	-	RAMPAGE_only	6	6	15	0.887588	2.840224	chr4	88456468	88456764	SINE|Alu|AluY	-	chr4	88419329	88455289	STRG.16060.1	-	88419329,88419573,88420355,88455217	88419408,88419712,88420428,88455289	0.933333
uterus_female_adult_53_years	chr16	2757780	2757815	2757814	+	High_confidence	20	23	54	3.195316	5.148316	chr16	2757798	2757883	SINE|MIR|MIRb	+	chr16	2757831	2760010	SRRM2|ENST00000575870.5	+	2757831,2758469,2758984,2759139,2759351,2759568,2759746	2757945,2758547,2759047,2759172,2759402,2759661,2760010	0.981481
uterus_female_adult_53_years	chr17	15475732	15475733	15475732	-	RAMPAGE_only	6	6	6	0.355035	2.584963	chr17	15475709	15475992	DNA|TcMar-Tigger|Tigger19a	-	chr17	15436014	15467611	CDRT4|ENST00000619038.4	-	15436014,15440207,15453003,15467459	15438200,15440285,15453085,15467611	0.666667
uterus_female_adult_53_years	chr3	134485415	134485490	134485415	-	High_confidence	6	9	56	3.313661	5.149453	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134477703	134485989	ANAPC13|NM_001242375.1	-	134477703,134482805,134485700	134478715,134482931,134485989	0.857143
uterus_female_adult_53_years	chr2	174118117	174118130	174118129	-	RAMPAGE_only	4	4	14	0.828415	3.521641	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075189	174123227	STRG.8555.1	-	174075189,174078967,174081151,174081923,174123179	174075527,174079090,174081248,174082064,174123227	1.000000
uterus_female_adult_53_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	26	26	26	1.538486	2.950064	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.923077
uterus_female_adult_53_years	chr4	68576324	68576325	68576324	-	RAMPAGE_only	7	7	7	0.414208	2.521641	chr4	68576215	68576696	LTR|ERV1|LTR2B	-	chr4	68537183	68568527	UGT2B17|ENST00000317746.2	-	68537183,68550676,68551823,68560536,68565571,68567760	68537904,68550896,68551911,68560668,68565720,68568527	0.857143
uterus_female_adult_53_years	chr19	20423697	20423704	20423703	-	RAMPAGE_only	28	38	63	3.727869	4.411012	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.761905
uterus_female_adult_53_years	chr21	46256839	46256893	46256892	-	High_confidence	3	3	10	0.591725	2.947703	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.700000
uterus_female_adult_53_years	chr22	18149848	18149869	18149848	+	High_confidence	5	5	10	0.591725	2.646439	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	0.900000
uterus_female_adult_53_years	chr8	99892036	99892057	99892056	-	RAMPAGE_only	114	114	221	13.077128	4.766320	chr8	99892045	99892186	LTR|ERV1|LTR56	-	chr8	99878149	99893135	COX6C|ENST00000524245.5	-	99878149,99887489,99891907,99893012	99878265,99887618,99892052,99893135	0.990950
uterus_female_adult_53_years	chr17	67920076	67920114	67920113	+	High_confidence	3	3	12	0.710070	3.251629	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	0.916667
uterus_female_adult_53_years	chr11	77175252	77175303	77175302	+	High_confidence	10	10	34	2.011866	4.793345	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77174755	77184996	MYO7A|ENST00000409893.6	+	77174755,77175371,77177548,77179044,77179734,77180373,77181379,77181950,77182423,77183067,77184587	77174914,77175464,77177643,77179129,77179953,77180481,77181589,77182154,77182600,77183157,77184996	0.970588
uterus_female_adult_53_years	chr4	21544656	21544671	21544656	-	High_confidence	21	21	72	4.260422	5.082693	chr4	21544311	21544682	LTR|ERVL-MaLR|MLT1E2	-	chr4	20728615	21544656	KCNIP4|NM_001035004.1	-	20728615,20732005,20732680,20734627,20749661,20758820,20850542,21544389	20730129,20732068,20732785,20734735,20749732,20758890,20850667,21544656	0.569444
uterus_female_adult_53_years	chr7	153776827	153776846	153776827	+	RAMPAGE_only	2	2	9	0.532553	2.500000	chr7	153776588	153778481	LINE|L1|L1MC4	+	chr7	153775406	153778052	STRG.28824.1	+	153775406	153778052	0.888889
uterus_female_adult_53_years	chr4	99810669	99810673	99810672	+	RAMPAGE_only	6	7	12	0.710070	3.095795	chr4	99810513	99810839	LTR|ERVL-MaLR|MLT1A0	+	chr4	99816823	99870190	DAPP1|NM_014395.2	+	99816823,99835622,99840288,99853217,99861577,99863009,99863769,99866033,99868116	99817014,99835745,99840422,99853348,99861625,99863072,99863855,99866121,99870190	0.833333
uterus_female_adult_53_years	chr5	139526237	139526238	139526237	+	High_confidence	37	39	49	2.899454	4.807367	chr5	139525865	139526346	LTR|ERV1|LTR2B	+	chr5	139526430	139626855	UBE2D2|ENST00000511725.5	+	139526430,139600371,139614585,139614696,139614860,139623367,139626755	139526612,139600435,139614617,139614774,139614966,139623461,139626855	0.571429
uterus_female_adult_53_years	chr16	67571180	67571189	67571180	+	High_confidence	3	3	9	0.532553	2.500000	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.888889
uterus_female_adult_53_years	chr20	37297387	37297401	37297387	+	High_confidence	17	17	30	1.775176	4.323161	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.966667
uterus_female_adult_53_years	chr14	95516120	95516121	95516120	+	High_confidence	5	6	8	0.473380	2.807355	chr14	95515998	95516155	SINE|MIR|MIRc	-	chr14	95516135	95517911	AL133467.1|ENST00000554161.1	+	95516135,95517003	95516220,95517911	0.875000
uterus_female_adult_53_years	chr12	122274041	122274117	122274041	-	RAMPAGE_only	4	4	24	1.420141	3.845351	chr12	122273741	122274010	SINE|Alu|AluSz	-	chr12	122272460	122275823	CLIP1|ENST00000501271.2	-	122272460,122274037	122273100,122275823	0.916667
uterus_female_adult_53_years	chr5	151687240	151687251	151687244	-	High_confidence	6	8	19	1.124278	4.037401	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.947368
uterus_female_adult_53_years	chr7	101217578	101217604	101217578	-	High_confidence	2	2	10	0.591725	3.121928	chr7	101217551	101217611	SINE|MIR|MIR3	-	chr7	101205976	101217673	PLOD3|ENST00000223127.7	-	101205976,101206778,101207577,101208852,101210092,101210330,101210531,101211590,101211845,101212252,101212529,101212841,101213106,101215088,101215907,101216162,101216409,101216694,101217165	101206436,101206904,101207724,101208957,101210161,101210444,101210673,101211716,101211950,101212374,101212655,101212943,101213204,101215152,101216020,101216326,101216546,101216786,101217673	1.000000
uterus_female_adult_53_years	chr5	1579449	1579450	1579449	-	High_confidence	7	7	7	0.414208	2.521641	chr5	1578346	1579846	LTR|ERVK|HERVK9-int	-	chr5	1572227	1579461	STRG.17837.1	-	1572227,1574181,1576178,1579276	1572286,1574295,1576309,1579461	1.000000
uterus_female_adult_53_years	chr11	71999608	71999616	71999608	+	High_confidence	10	11	17	1.005933	3.500000	chr11	71999640	71999733	SINE|MIR|MIR3	+	chr11	71999600	72002697	IL18BP|ENST00000534583.5	+	71999600,72000350,72001200,72001404,72001783,72002552	72000012,72000557,72001324,72001552,72001948,72002697	0.941176
uterus_female_adult_53_years	chr1	203711096	203711101	203711100	+	RAMPAGE_only	3	4	6	0.355035	2.584963	chr1	203711131	203711274	SINE|MIR|MIRc	+	chr1	203682808	203740319	ATP2B4|ENST00000341360.6	+	203682808,203698156,203699459,203700205,203700797,203702043,203703651,203707008,203707861,203709300,203710876,203711959,203713164,203714170,203720548,203721196,203722477,203723880,203727394,203733222,203739545	203683398,203698354,203699717,203700331,203700923,203702079,203703813,203707223,203708104,203709542,203711108,203712139,203713252,203714277,203720740,203721410,203722689,203723988,203727571,203733400,203740319	1.000000
uterus_female_adult_53_years	chr2	229586837	229586927	229586868	-	High_confidence	21	21	148	8.757534	6.447332	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229358551	229587004	STRG.9825.2	-	229358551,229366872,229388264,229407231,229418107,229447315,229477139,229512782,229546946,229585857,229586693	229358651,229367119,229388396,229407345,229418230,229447540,229477253,229512936,229547092,229586024,229587004	0.979730
uterus_female_adult_53_years	chr2	182030747	182030774	182030747	+	High_confidence	4	4	11	0.650898	3.027169	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	1.000000
uterus_female_adult_53_years	chr17	50271485	50271488	50271487	+	High_confidence	4	10	10	0.591725	2.921928	chr17	50271337	50271653	SINE|Alu|AluJo	-	chr17	50271405	50281485	TMEM92|NM_001168215.1	+	50271405,50274475,50277714,50278555,50278800,50279194	50271489,50274570,50277740,50278630,50278996,50281485	1.000000
uterus_female_adult_53_years	chr1	1655395	1655410	1655409	-	RAMPAGE_only	10	10	21	1.242623	3.921928	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.571429
uterus_female_adult_53_years	chr1	89272843	89272883	89272867	-	High_confidence	9	9	40	2.366901	4.714647	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.875000
uterus_female_adult_53_years	chr1	184590772	184590802	184590801	+	RAMPAGE_only	2	4	12	0.710070	2.663533	chr1	184590844	184591183	DNA|TcMar-Tigger|MER2B	+	chr1	184568398	184619936	C1orf21|ENST00000367514.7	+	184568398,184590738,184598400,184619517	184568485,184590815,184598461,184619936	0.916667
uterus_female_adult_53_years	chr6	2990749	2990755	2990749	-	RAMPAGE_only	7	9	19	1.124278	3.115834	chr6	2990657	2991209	LTR|ERV1|LTR6A	+	chr6	2989721	2998743	AL133351.1|ENST00000456189.2	-	2989721,2998616	2990011,2998743	1.000000
uterus_female_adult_53_years	chr2	174118081	174118085	174118081	-	RAMPAGE_only	10	10	19	1.124278	3.576618	chr2	174117900	174118270	LTR|ERVL-MaLR|MSTA	-	chr2	174075189	174123227	STRG.8555.1	-	174075189,174078967,174081151,174081923,174123179	174075527,174079090,174081248,174082064,174123227	1.000000
uterus_female_adult_53_years	chr9	13386129	13386133	13386132	+	RAMPAGE_only	29	29	44	2.603591	4.669548	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.886364
uterus_female_adult_53_years	chr12	96892473	96892474	96892473	+	RAMPAGE_only	23	25	25	1.479313	4.088779	chr12	96892283	96892630	LTR|ERVL-MaLR|THE1A	+	chr12	96907222	96953777	NEDD1|ENST00000266742.8	+	96907222,96907603,96909751,96912722,96917620,96919984,96934975,96936610,96937197,96940408,96942576,96943559,96944638,96945692,96951431,96951948	96907300,96907856,96909895,96912817,96917737,96920125,96935205,96936812,96937393,96940537,96942624,96943762,96944795,96945849,96951498,96953777	0.800000
uterus_female_adult_53_years	chr12	12635913	12635914	12635913	+	High_confidence	6	7	9	0.532553	2.725481	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12635293	12644988	STRG.40771.2	+	12635293,12635776,12637569,12641993	12635353,12635974,12637714,12644988	1.000000
uterus_female_adult_53_years	chr14	32402135	32402136	32402135	+	RAMPAGE_only	32	32	32	1.893521	3.792838	chr14	32402054	32402245	SINE|tRNA|LFSINE_Vert	+	chr14	32433163	32439032	AKAP6|ENST00000554449.1	+	32433163,32438673	32433817,32439032	0.781250
uterus_female_adult_53_years	chr18	244446	244458	244457	-	RAMPAGE_only	3	4	7	0.414208	2.807355	chr18	243923	245900	LINE|L1|L1MEi	-	chr18	214520	245734	THOC1|ENST00000583228.5	-	214520,215428,216485,218885,223439,224083,224923,225088,226800,244301	214921,215504,216633,218969,223505,224179,224994,225403,226901,245734	0.714286
uterus_female_adult_53_years	chr19	46350849	46350861	46350849	+	RAMPAGE_only	7	7	12	0.710070	3.459432	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.833333
uterus_female_adult_53_years	chrX	53585017	53585018	53585017	-	RAMPAGE_only	6	6	6	0.355035	2.584963	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53532095	53654107	HUWE1|ENST00000612484.4	-	53532095,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543840,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53595186,53600117,53602590,53603367,53604588,53607522,53608851,53614533,53615743,53616969,53617339,53624594,53625156,53627409,53627738,53628492,53628751,53629515,53630934,53631413,53631566,53632486,53634235,53645310,53647367,53648211,53654062	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575788,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53594621,53595403,53600309,53602658,53603501,53604834,53607699,53608909,53614745,53615835,53617147,53617446,53624675,53625258,53627515,53627879,53628620,53628902,53629616,53631034,53631482,53631614,53632564,53634298,53645463,53647574,53648310,53654107	1.000000
uterus_female_adult_53_years	chr2	229232042	229232054	229232053	-	High_confidence	7	7	18	1.065105	3.683542	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.722222
uterus_female_adult_53_years	chr22	21001591	21001637	21001591	-	High_confidence	2	2	11	0.650898	2.921928	chr22	21001557	21001648	SINE|MIR|MIR	-	chr22	21000271	21001518	THAP7|ENST00000488975.1	-	21000271,21000646,21001255	21000432,21000729,21001518	0.636364
uterus_female_adult_53_years	chr7	100213188	100213217	100213188	-	RAMPAGE_only	2	2	8	0.473380	2.750000	chr7	100212980	100213310	LTR|ERVL-MaLR|MLT1A0	-	chr7	100211934	100215179	CASTOR3|ENST00000445230.1	-	100211934,100212952,100214969	100211994,100213133,100215179	1.000000
uterus_female_adult_53_years	chr4	87524562	87524573	87524572	-	RAMPAGE_only	16	19	33	1.952693	4.413910	chr4	87524364	87524802	LTR|ERV1|LOR1b	+	chr4	87494416	87528619	SPARCL1|ENST00000535835.5	-	87494416,87494980,87499520,87504821,87528554	87494598,87495127,87499585,87504923,87528619	0.666667
uterus_female_adult_53_years	chr9	127451107	127451137	127451107	-	High_confidence	2	3	8	0.473380	2.750000	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	1.000000
uterus_female_adult_53_years	chr5	55982731	55982800	55982783	-	High_confidence	4	5	23	1.360968	3.588354	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	1.000000
uterus_female_adult_53_years	chr2	11345441	11345456	11345441	-	High_confidence	3	3	8	0.473380	2.500000	chr2	11345435	11345647	LINE|L1|L1ME4c	+	chr2	11179758	11345407	ROCK2|NM_001321643.1	-	11179758,11192147,11192450,11193778,11194255,11194954,11197179,11197525,11198490,11198680,11200956,11201309,11202051,11207725,11208286,11211680,11214356,11214839,11215320,11215509,11216157,11217089,11218454,11218965,11221197,11222082,11224321,11227253,11235701,11249660,11286538,11287654,11345273	11183440,11192361,11192712,11193857,11194344,11195025,11197348,11197705,11198585,11198774,11201143,11201413,11202121,11207910,11208447,11211840,11214463,11215086,11215412,11215645,11216206,11217169,11218466,11219026,11221357,11222174,11224460,11227398,11235962,11249798,11286639,11287736,11345407	0.750000
uterus_female_adult_53_years	chr10	79446868	79446869	79446868	-	RAMPAGE_only	11	11	15	0.887588	2.788450	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.933333
uterus_female_adult_53_years	chr1	21876237	21876248	21876237	-	RAMPAGE_only	4	4	10	0.591725	2.921928	chr1	21876092	21876241	LINE|L2|L2c	+	chr1	21874477	21875208	HSPG2|ENST00000498495.1	-	21874477,21874615,21874890	21874533,21874729,21875208	0.500000
uterus_female_adult_53_years	chr12	53464798	53464829	53464798	+	RAMPAGE_only	1	1	10	0.591725	2.947703	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53462513	53479614	STRG.41724.13	+	53462513,53464759,53465931,53467220,53468776,53471637,53479405	53462567,53464852,53465973,53467293,53468832,53471807,53479614	0.900000
uterus_female_adult_53_years	chrX	73837439	73837504	73837503	-	RAMPAGE_only	7	7	29	1.716003	2.849904	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.965517
uterus_female_adult_53_years	chr21	26841236	26841237	26841236	-	High_confidence	9	10	11	0.650898	3.095795	chr21	26841205	26841502	SINE|Alu|AluSz	+	chr21	26836286	26841711	ADAMTS1|ENST00000464589.1	-	26836286,26838438,26839874,26840997	26838278,26839762,26840562,26841711	0.636364
uterus_female_adult_53_years	chr17	2667195	2667196	2667195	+	High_confidence	6	6	6	0.355035	2.584963	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.833333
uterus_female_adult_53_years	chr1	9239813	9239844	9239843	+	High_confidence	5	5	14	0.828415	2.931209	chr1	9239801	9239853	LINE|Penelope|Penelope1_Vert	+	chr1	9239843	9271337	H6PD|NM_001282587.1	+	9239843,9244924,9246965,9262058,9263508	9240018,9245561,9247083,9262328,9271337	0.785714
uterus_female_adult_53_years	chr7	134432378	134432418	134432378	-	High_confidence	3	3	12	0.710070	3.277613	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134417781	134432416	AC009275.1|ENST00000609209.1	-	134417781,134418626,134432313	134418219,134418974,134432416	0.750000
uterus_female_adult_53_years	chr6	169654674	169654713	169654674	-	RAMPAGE_only	4	4	13	0.769243	3.546594	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169558320	169667275	WDR27|ENST00000546525.5	-	169558320,169582835,169602218,169613558,169632946,169634427,169638538,169643696,169647772,169649197,169651929,169658275,169659085,169659450,169660662,169662303,169663562,169664165,169665485,169667135	169559927,169582934,169602321,169613656,169633068,169634525,169638660,169643786,169647870,169649275,169652008,169658358,169659207,169659518,169660766,169662424,169663649,169664286,169665556,169667275	0.692308
uterus_female_adult_53_years	chr11	119046591	119046604	119046603	-	RAMPAGE_only	8	8	13	0.769243	2.918296	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119044316	119047812	STRG.39969.1	-	119044316,119045780,119046416,119046561,119047733	119045654,119045831,119046467,119046802,119047812	0.923077
uterus_female_adult_53_years	chr14	22909560	22909561	22909560	-	RAMPAGE_only	8	8	12	0.710070	2.913977	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22906027	22919110	RBM23|ENST00000554955.5	-	22906027,22908332,22909482,22911327,22918998	22906368,22908380,22909595,22911403,22919110	0.666667
uterus_female_adult_53_years	chr12	8681676	8681677	8681676	+	High_confidence	12	12	15	0.887588	3.521641	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.600000
uterus_female_adult_53_years	chr9	129698737	129698738	129698737	+	RAMPAGE_only	7	7	9	0.532553	2.725481	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	1.000000
uterus_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	709	823	1199	70.947858	4.951188	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.988324
uterus_female_adult_53_years	chr8	85378112	85378113	85378112	-	High_confidence	9	10	10	0.591725	2.503258	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	0.900000
uterus_female_adult_53_years	chr3	139344535	139344548	139344547	+	High_confidence	11	11	37	2.189383	4.281036	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.972973
uterus_female_adult_53_years	chr2	203533430	203533449	203533448	-	High_confidence	4	4	10	0.591725	2.725481	chr2	203533294	203533536	DNA|TcMar-Tigger|Tigger19b	-	chr2	203489799	203533433	RAPH1|ENST00000428637.5	-	203489799,203491213,203495233,203533364	203490089,203491319,203495353,203533433	0.700000
uterus_female_adult_53_years	chr15	37984735	37984774	37984773	+	High_confidence	4	4	18	1.065105	3.499228	chr15	37984710	37984905	LTR|ERVL-MaLR|MLT1A0	+	chr15	37984765	38040987	LINC02345|ENST00000558081.2	+	37984765,37993401,38039995	37984835,37993486,38040987	0.500000
uterus_female_adult_53_years	chr17	42403661	42403693	42403692	-	RAMPAGE_only	16	16	27	1.597658	4.238901	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402451	42423250	STRG.52416.1	-	42402451,42405107,42422779	42404993,42405388,42423250	0.962963
uterus_female_adult_53_years	chr8	80485592	80485596	80485592	+	High_confidence	6	6	10	0.591725	2.725481	chr8	80485462	80485637	DNA?|DNA?|Eulor6D	-	chr8	80485618	80526265	ZBTB10|NM_001277145.1	+	80485618,80499493,80513909,80518402,80518781,80519222	80485879,80500382,80514008,80518579,80518954,80526265	0.600000
uterus_female_adult_53_years	chr10	63594819	63594838	63594825	+	RAMPAGE_only	5	5	16	0.946760	3.373557	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	0.937500
uterus_female_adult_53_years	chr3	50230995	50230996	50230995	+	High_confidence	8	8	8	0.473380	2.750000	chr3	50230959	50231003	SINE|MIR|MIR3	+	chr3	50230775	50259354	GNAI2|NM_001282617.1	+	50230775,50252099,50252396,50253023,50256191,50256722,50256936,50257499,50258367	50230998,50252142,50252538,50253184,50256320,50256852,50257090,50257714,50259354	1.000000
uterus_female_adult_53_years	chr1	1721671	1721708	1721704	-	High_confidence	8	8	27	1.597658	3.852498	chr1	1721630	1721714	LINE|L2|L2	+	chr1	1702880	1721655	CDK11A|ENST00000356937.7	-	1702880,1703079,1703475,1703823,1704038,1704549,1704903,1705641,1707408,1708179,1708793,1709037,1709517,1712263,1716345,1719357,1721595	1702999,1703269,1703624,1703940,1704344,1704655,1705025,1705732,1707584,1708245,1708952,1709133,1709640,1712427,1716478,1719455,1721655	0.703704
uterus_female_adult_53_years	chr2	227534899	227534917	227534916	+	RAMPAGE_only	2	3	7	0.414208	2.584963	chr2	227534889	227534981	LINE|RTE-BovB|MamRTE1	-	chr2	227536954	227554912	AGFG1|ENST00000458212.1	+	227536954,227550058,227551958,227553703,227554435	227536993,227550106,227552117,227553795,227554912	0.714286
uterus_female_adult_53_years	chr19	58312183	58312184	58312183	+	RAMPAGE_only	5	7	7	0.414208	2.521641	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.857143
uterus_female_adult_53_years	chr9	92536601	92536704	92536601	-	High_confidence	37	39	93	5.503045	5.217530	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.935484
uterus_female_adult_53_years	chr20	13851407	13851426	13851425	-	High_confidence	8	9	21	1.242623	3.880180	chr20	13851304	13851476	LINE|L2|L2a	+	chr20	13849246	13851419	SEL1L2|ENST00000482196.5	-	13849246,13850190,13851323	13849604,13850319,13851419	0.904762
uterus_female_adult_53_years	chr16	67183549	67183586	67183549	-	High_confidence	4	4	17	1.005933	3.500000	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67176770	67183586	KIAA0895L|ENST00000563831.2	-	67176770,67178198,67183261	67176975,67178504,67183586	0.647059
uterus_female_adult_53_years	chr8	116648847	116648917	116648847	-	RAMPAGE_only	11	11	53	3.136144	4.849196	chr8	116648797	116648849	LINE|RTE-BovB|MamRTE1	-	chr8	116644665	116755812	STRG.30813.3	-	116644665,116646470,116648805,116655855,116657214,116726015,116755665	116645103,116646603,116648926,116656005,116657314,116726172,116755812	0.981132
uterus_female_adult_53_years	chr1	166850083	166850101	166850083	+	RAMPAGE_only	2	2	8	0.473380	2.750000	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166840088	166854473	POGK|ENST00000367875.1	+	166840088,166840954,166846611,166847493,166848937	166840446,166841088,166846738,166847592,166854473	1.000000
uterus_female_adult_53_years	chr17	10291819	10291831	10291822	+	High_confidence	3	4	10	0.591725	2.921928	chr17	10291623	10291998	LTR|ERVL-MaLR|THE1B	+	chr17	10291819	10317926	AC005291.2|ENST00000609088.1	+	10291819,10317497	10291913,10317926	0.500000
uterus_female_adult_53_years	chr12	26832766	26832767	26832766	-	High_confidence	5	5	7	0.414208	2.521641	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.857143
uterus_female_adult_53_years	chr13	106561950	106561951	106561950	-	High_confidence	15	15	15	0.887588	3.506891	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.733333
uterus_female_adult_53_years	chr8	74599783	74599798	74599787	+	High_confidence	4	4	12	0.710070	3.095795	chr8	74594235	74600252	LINE|L1|L1PA3	-	chr8	74599780	74823313	MIR2052HG|ENST00000523442.5	+	74599780,74612852,74702378,74703605,74752440,74758110,74823267	74599908,74612940,74702456,74703682,74752533,74758150,74823313	0.500000
uterus_female_adult_53_years	chr1	147172975	147172993	147172975	+	High_confidence	4	5	9	0.532553	2.500000	chr1	147173020	147173299	SINE|Alu|AluSc	+	chr1	147172770	147175205	PDIA3P1|ENST00000440377.2	+	147172770,147174423	147173559,147175205	0.888889
uterus_female_adult_53_years	chr4	79086177	79086180	79086177	+	RAMPAGE_only	2	4	7	0.414208	2.807355	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79195836	79308755	LINC01088|ENST00000507476.5	+	79195836,79306690,79307063,79308272	79195932,79306728,79307231,79308755	0.571429
uterus_female_adult_53_years	chr4	79492569	79492601	79492600	+	High_confidence	8	8	37	2.189383	4.022001	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.810811
uterus_female_adult_53_years	chr15	57451531	57451576	57451564	+	RAMPAGE_only	8	8	57	3.372834	4.572030	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57439397	57461886	STRG.47881.2	+	57439397,57440376,57442372,57451499,57452140,57453682,57461679	57439601,57440471,57442478,57451601,57452289,57453818,57461886	0.947368
uterus_female_adult_53_years	chr14	68882879	68883037	68882879	-	High_confidence	26	26	131	7.751601	5.416190	chr14	68882758	68882844	LINE|L2|L2a	-	chr14	68874785	68882567	ACTN1|ENST00000555075.5	-	68874785,68877081,68879961,68880809,68882457	68875017,68877240,68880108,68880989,68882567	0.938931
uterus_female_adult_53_years	chr15	90467513	90467554	90467553	+	RAMPAGE_only	7	7	18	1.065105	3.969816	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90388260	90500371	IQGAP1|ENST00000560738.1	+	90388260,90390773,90466046,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390824,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500371	0.888889
uterus_female_adult_53_years	chrX	5726222	5726240	5726239	-	High_confidence	3	3	8	0.473380	2.521641	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.625000
uterus_female_adult_53_years	chr14	49771645	49771673	49771672	+	RAMPAGE_only	4	4	10	0.591725	2.921928	chr14	49771716	49772002	SINE|Alu|AluSz	+	chr14	49768167	49783122	KLHDC2|ENST00000557247.1	+	49768167,49771593,49774560,49777838,49778177,49778410,49779594,49779747,49780212,49782369,49782829	49768621,49771673,49774678,49777954,49778259,49778494,49779675,49779806,49780322,49782457,49783122	1.000000
uterus_female_adult_53_years	chr6	79631258	79631329	79631328	+	High_confidence	64	74	231	13.668853	6.350471	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.978355
uterus_female_adult_53_years	chr10	91796463	91796497	91796496	+	RAMPAGE_only	3	3	11	0.650898	2.550341	chr10	91796343	91796573	DNA|hAT-Charlie|MER1A	-	chr10	91798311	91865276	TNKS2|ENST00000371627.4	+	91798311,91812982,91817133,91819269,91819481,91819938,91822295,91827016,91828284,91830922,91831102,91833852,91836918,91840560,91841282,91842171,91844918,91845751,91848382,91849511,91851215,91855028,91855613,91857424,91859461,91861998,91862936	91798889,91813207,91817229,91819306,91819557,91820033,91822362,91827203,91828406,91831014,91831181,91834024,91836998,91840706,91841448,91842391,91845028,91845940,91848635,91849594,91851336,91855126,91855688,91857530,91859648,91862155,91865276	0.636364
uterus_female_adult_53_years	chr4	54296630	54296653	54296645	+	RAMPAGE_only	11	12	33	1.952693	4.165014	chr4	54296613	54296722	DNA|hAT-Charlie|MER5B	-	chr4	54229096	54298247	PDGFRA|ENST00000257290.9	+	54229096,54258756,54261094,54263666,54264918,54267288,54267551,54270632,54272393,54273536,54274530,54274840,54277387,54277895,54278361,54280315,54285370,54285840,54287429,54288798,54289008,54290312,54295124	54229415,54258817,54261412,54263927,54265049,54267460,54267741,54270748,54272520,54273730,54274625,54274973,54277492,54278006,54278515,54280482,54285486,54285963,54287541,54288898,54289114,54290554,54298247	1.000000
uterus_female_adult_53_years	chr1	70974343	70974359	70974343	-	RAMPAGE_only	3	3	10	0.591725	2.725481	chr1	70974290	70974411	SINE|tRNA|LFSINE_Vert	+	chr1	70852572	71047633	PTGER3|ENST00000460330.5	-	70852572,70953762,71012304,71046680	70852859,70953789,71012484,71047633	0.700000
uterus_female_adult_53_years	chr11	64807612	64807620	64807612	-	High_confidence	2	2	6	0.355035	2.584963	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64803702	64807087	STRG.38603.1	-	64803702,64805033,64805634,64806231,64807010	64804816,64805198,64805770,64806368,64807087	1.000000
uterus_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	83	85	85	5.029665	4.920001	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.941176
uterus_female_adult_53_years	chr22	50757120	50757127	50757120	+	High_confidence	4	4	12	0.710070	2.594907	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.666667
uterus_female_adult_53_years	chr18	2589112	2589125	2589112	+	RAMPAGE_only	12	12	44	2.603591	4.925119	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2571510	2616635	NDC80|NM_006101.2	+	2571510,2572976,2574988,2577745,2577968,2578926,2585112,2587829,2589203,2590017,2595415,2599018,2601395,2606414,2608699,2610758,2616436	2571683,2573086,2575066,2577869,2578141,2579029,2585202,2587923,2589310,2590162,2595621,2599171,2601485,2606507,2608830,2610861,2616635	0.977273
uterus_female_adult_53_years	chr15	88635643	88635655	88635654	+	High_confidence	4	4	9	0.532553	2.750000	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NR_130134.1	+	88635636,88652109,88655414	88635700,88652310,88656344	0.666667
uterus_female_adult_53_years	chr2	240022172	240022280	240022172	-	RAMPAGE_only	4	4	25	1.479313	2.968884	chr2	240022158	240022215	LINE|CR1|L3	-	chr2	239960738	240025306	NDUFA10|ENST00000404554.5	-	239960738,239982114,239990073,240005209,240007315,240011616,240014738,240018552,240021196,240022171,240025226	239961186,239982219,239990182,240005295,240007370,240011696,240014860,240018639,240021412,240022340,240025306	1.000000
uterus_female_adult_53_years	chr7	101308293	101308300	101308299	+	High_confidence	4	6	9	0.532553	2.500000	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.888889
uterus_female_adult_53_years	chr2	38515639	38515647	38515639	-	High_confidence	8	8	17	1.005933	2.952820	chr2	38515436	38515973	LTR|ERVL|LTR18B	+	chr2	38458636	38515740	LOC101929596|NR_110259.1	-	38458636,38469243,38482958,38496274,38515446	38458875,38469441,38483156,38496478,38515740	0.882353
uterus_female_adult_53_years	chr5	73078286	73078289	73078286	+	RAMPAGE_only	4	5	11	0.650898	2.646439	chr5	73078328	73078446	LINE|L1|L1M5	+	chr5	73017245	73089512	STRG.19113.1	+	73017245,73034656,73037142,73041290,73051348,73052331,73054159,73054524,73056064,73058432,73063840,73068649,73074741,73077337,73078179,73081782,73082760,73087588,73088067	73017308,73034701,73037215,73041315,73051406,73052507,73054171,73054549,73056107,73058524,73063944,73068779,73074853,73077493,73078312,73081982,73082825,73087753,73089512	0.909091
uterus_female_adult_53_years	chr20	38985968	38985975	38985968	+	RAMPAGE_only	10	10	19	1.124278	3.576618	chr20	38985957	38986188	SINE|MIR|MIR	+	chr20	38962359	39039721	DHX35|ENST00000484417.5	+	38962359,38969080,38972558,38983698,38988792,38991453,38992355,38994820,39001729,39002771,39003748,39006145,39010279,39014879,39018803,39021840,39023689,39025229,39028417,39030703,39034205,39038498	38962407,38969214,38972651,38983776,38988917,38991515,38992425,38994880,39001842,39002868,39003907,39006356,39010404,39014934,39018899,39021935,39023767,39025359,39028499,39030775,39034317,39039721	0.947368
uterus_female_adult_53_years	chr6	116590897	116590932	116590931	+	RAMPAGE_only	4	4	11	0.650898	3.277613	chr6	116590978	116591112	SINE|Alu|FLAM_C	+	chr6	116571488	116593588	RWDD1|ENST00000487832.6	+	116571488,116574057,116580294,116584726,116588841,116590271,116590887,116592979	116571655,116574171,116580360,116584857,116588985,116590404,116590950,116593588	1.000000
uterus_female_adult_53_years	chr12	96436657	96436666	96436657	+	RAMPAGE_only	11	12	24	1.420141	3.518370	chr12	96436185	96436703	LTR|ERVL-MaLR|MLT1L	-	chr12	96489570	96501201	CFAP54|ENST00000554621.1	+	96489570,96500833	96489926,96501201	0.500000
uterus_female_adult_53_years	chr1	174874418	174874428	174874427	+	High_confidence	4	6	12	0.710070	3.277613	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874457	174958182	RABGAP1L|ENST00000478442.5	+	174874457,174877391,174957456,174957890	174874506,174877605,174957549,174958182	0.666667
uterus_female_adult_53_years	chr15	65244454	65244455	65244454	-	RAMPAGE_only	19	21	22	1.301796	3.913977	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	1.000000
uterus_female_adult_53_years	chr7	154928480	154928506	154928503	+	High_confidence	35	36	68	4.023732	5.391298	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.926471
uterus_female_adult_53_years	chr2	11534092	11534093	11534092	+	High_confidence	12	12	15	0.887588	3.456565	chr2	11533857	11534477	DNA|TcMar-Tigger|Tigger9b	-	chr2	11534115	11642786	GREB1|NM_014668.3	+	11534115,11556453,11562462,11566479,11576352,11578296,11580703,11585160,11585761,11588745,11592775,11595250,11596110,11597780,11598679,11600799,11602405,11610687,11612494,11615090,11616630,11618287,11620904,11625153,11626961,11629947,11631908,11632888,11634130,11635269,11637715,11638670,11640290	11534254,11556771,11562582,11566656,11576535,11578431,11580832,11585274,11585905,11588931,11593126,11595379,11596239,11597978,11598860,11600995,11602542,11611027,11612610,11615290,11616720,11618919,11621007,11625312,11627104,11630109,11632113,11633063,11634349,11635405,11637916,11638809,11642786	0.933333
uterus_female_adult_53_years	chr6	26474341	26474348	26474345	+	RAMPAGE_only	6	6	16	0.946760	3.625000	chr6	26474095	26474464	LTR|ERV1|MER57C2	+	chr6	26465226	26476619	BTN2A1|ENST00000480218.1	+	26465226,26465952,26466061,26476160	26465406,26465973,26466088,26476619	0.875000
uterus_female_adult_53_years	chr17	65709452	65709457	65709452	-	RAMPAGE_only	4	4	9	0.532553	2.947703	chr17	65709285	65709646	LTR|ERVL-MaLR|THE1B	-	chr17	65635820	65743124	CEP112|ENST00000581734.5	-	65635820,65637123,65640963,65661735,65689128,65743067	65635974,65637188,65641065,65661814,65689218,65743124	0.777778
uterus_female_adult_53_years	chr13	52570279	52570324	52570323	+	RAMPAGE_only	20	21	45	2.662764	4.169184	chr13	52570306	52570718	LINE|L1|L1PA16	-	chr13	52573373	52587095	AL137058.1|ENST00000648493.1	+	52573373,52579343,52583095,52584632,52586809	52573446,52579435,52583188,52585168,52587095	0.777778
uterus_female_adult_53_years	chr11	17225067	17225068	17225067	+	RAMPAGE_only	7	7	7	0.414208	2.521641	chr11	17224821	17225165	LINE|L2|L2a	+	chr11	17260339	17349980	NUCB2|ENST00000646648.1	+	17260339,17269184,17276007,17282788,17295323,17296103,17301743,17309571,17310824,17311184,17311871,17312027,17315385,17330126,17330901,17337347,17349344	17260501,17269331,17276203,17282943,17295467,17296211,17301870,17309675,17311010,17311283,17311930,17312120,17315475,17330297,17330983,17337534,17349980	0.857143
uterus_female_adult_53_years	chr1	33021386	33021417	33021416	-	RAMPAGE_only	9	9	22	1.301796	3.879664	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	1.000000
uterus_female_adult_53_years	chr3	135965673	135965749	135965723	+	High_confidence	36	57	223	13.195473	6.154408	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965759	136002673	STRG.13128.1	+	135965759,136001058	135965849,136002673	0.968610
uterus_female_adult_53_years	chr12	108701721	108701732	108701721	-	High_confidence	3	3	7	0.414208	2.521641	chr12	108701603	108701690	SINE|MIR|MIR3	-	chr12	108662113	108701924	CORO1C|ENST00000547170.1	-	108662113,108678271,108701123,108701488	108662158,108678394,108701323,108701924	1.000000
uterus_female_adult_53_years	chr1	176162892	176162985	176162936	-	RAMPAGE_only	2	2	14	0.828415	3.182006	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	175944831	176184664	COP1|ENST00000367666.5	-	175944831,175947194,175986942,175988287,175989361,176027571,176043185,176043709,176046180,176081151,176085775,176116623,176135009,176149005,176162868,176163814,176175909,176184632	175945170,175947239,175987103,175988412,175989479,176027688,176043267,176043818,176046324,176081287,176085890,176116681,176135086,176149074,176162988,176163891,176176007,176184664	0.500000
uterus_female_adult_53_years	chr12	6016543	6016553	6016552	-	RAMPAGE_only	5	6	11	0.650898	2.921928	chr12	6016356	6016502	SINE|MIR|MIR3	-	chr12	5948873	6124675	VWF|ENST00000261405.9	-	5948873,5949785,5951843,5952390,5953495,5967485,5968126,5969210,5971598,5976110,5981785,5983149,5985044,5985562,5991818,5993861,5994414,5996001,6011616,6012086,6013480,6016088,6016515,6016753,6018364,6021899,6022739,6023630,6025579,6025905,6029341,6031443,6034687,6036387,6044290,6046722,6052542,6056856,6057848,6062953,6064245,6065136,6071296,6072330,6073618,6075334,6095459,6110373,6110865,6121173,6123141,6124420	5949203,5949883,5951883,5952519,5953594,5967602,5968167,5969391,5971709,5976260,5981991,5983254,5985119,5985665,5992018,5994203,5994607,5996222,6011794,6012130,6013645,6016232,6016656,6016870,6019743,6022035,6022898,6023787,6025693,6026046,6029488,6031578,6034826,6036491,6044451,6046817,6052783,6057072,6058044,6063054,6064384,6065273,6071343,6072442,6073741,6075551,6095584,6110582,6110968,6121338,6123196,6124675	0.909091
uterus_female_adult_53_years	chr8	143558019	143558020	143558019	+	High_confidence	15	16	16	0.946760	3.506891	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143558017	143560815	STRG.31270.1	+	143558017,143558377,143559331,143559776,143560602	143558021,143558451,143559552,143559969,143560815	0.625000
uterus_female_adult_53_years	chr5	150115615	150115634	150115633	-	RAMPAGE_only	3	3	8	0.473380	2.521641	chr5	150115432	150115598	SINE|MIR|MIR3	-	chr5	150113838	150155859	PDGFRB|NM_002609.3	-	150113838,150117617,150118746,150119466,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444,150126519,150129756,150130538,150131978,150132749,150133585,150133880,150134749,150135554,150137007,150155396	150115946,150117850,150118852,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125577,150126614,150129968,150130662,150132094,150132942,150133760,150134008,150135016,150135878,150137053,150155859	0.875000
uterus_female_adult_53_years	chr5	151158485	151158502	151158489	-	High_confidence	2	3	9	0.532553	3.000000	chr5	151158390	151158671	LINE|L2|L2a	-	chr5	151100705	151157882	ANXA6|NM_001155.4	-	151100705,151103569,151105244,151108454,151109752,151110626,151117126,151117757,151119299,151122146,151122916,151124285,151126401,151128180,151129406,151131230,151132475,151133093,151134426,151136255,151137230,151138677,151139352,151140152,151147883,151157679	151101507,151103692,151105303,151108550,151109846,151110644,151117180,151117837,151119390,151122260,151123011,151124367,151126480,151128239,151129529,151131289,151132571,151133187,151134483,151136335,151137321,151138791,151139447,151140243,151147926,151157882	0.666667
uterus_female_adult_53_years	chr1	206052890	206052891	206052890	+	RAMPAGE_only	26	26	34	2.011866	4.157768	chr1	206052518	206053000	LTR|ERV1|LTR2B	+	chr1	206037246	206053334	BX571818.1|ENST00000585172.2	+	206037246,206051852,206053020	206037299,206052001,206053334	0.529412
uterus_female_adult_53_years	chr5	34244804	34244812	34244811	-	High_confidence	6	6	11	0.650898	2.521928	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.545455
uterus_female_adult_53_years	chr3	57267783	57267787	57267783	+	RAMPAGE_only	2	2	7	0.414208	2.807355	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	1.000000
uterus_female_adult_53_years	chr14	32433129	32433161	32433158	+	High_confidence	8	11	22	1.301796	4.011365	chr14	32432769	32433226	LTR|ERVL-MaLR|MLT1J	-	chr14	32433163	32439032	AKAP6|ENST00000554449.1	+	32433163,32438673	32433817,32439032	0.863636
uterus_female_adult_53_years	chr13	52236182	52236227	52236182	-	High_confidence	7	7	26	1.538486	4.133661	chr13	52235788	52236194	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.615385
uterus_female_adult_53_years	chr4	99361501	99361502	99361501	-	RAMPAGE_only	11	11	11	0.650898	2.663533	chr4	99361269	99361501	SINE|MIR|MIR	-	chr4	99336491	99353045	ADH1C|NM_000669.4	-	99336491,99339576,99340574,99342794,99344861,99345178,99347005,99347744,99352657	99336776,99339715,99340710,99343055,99345081,99345266,99347144,99347846,99353045	0.909091
uterus_female_adult_53_years	chr11	58578102	58578156	58578132	-	High_confidence	16	33	95	5.621390	5.694016	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.526316
uterus_female_adult_53_years	chrX	48683361	48683363	48683361	+	High_confidence	8	13	13	0.769243	3.392747	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	1.000000
uterus_female_adult_53_years	chr2	102141906	102141932	102141906	+	High_confidence	3	3	8	0.473380	2.750000	chr2	102141941	102142029	SINE|MIR|MIR3	+	chr2	102141818	102176377	IL1R1|ENST00000428279.5	+	102141818,102153940,102164773,102165114,102166112,102168597,102171800,102172686,102174586,102175477,102176352	102141999,102154017,102165008,102165304,102166281,102168663,102171918,102172838,102174730,102175645,102176377	0.625000
uterus_female_adult_53_years	chr1	150457328	150457344	150457343	+	High_confidence	4	4	8	0.473380	2.807355	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150457351	150460274	STRG.3122.1	+	150457351,150460059	150457570,150460274	0.500000
uterus_female_adult_53_years	chr9	33068838	33068862	33068838	-	RAMPAGE_only	2	2	10	0.591725	2.641604	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.900000
uterus_female_adult_53_years	chr7	44828410	44828458	44828410	-	RAMPAGE_only	3	3	14	0.828415	3.378783	chr7	44828400	44828601	SINE|MIR|MIRb	-	chr7	44827994	44829430	STRG.26159.1	-	44827994	44829430	0.642857
uterus_female_adult_53_years	chr1	155343321	155343322	155343321	-	RAMPAGE_only	15	15	16	0.946760	3.189898	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336159	155346429	STRG.3350.1	-	155336159,155338088,155339327,155341935,155343313,155343603,155344182,155346382	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346429	0.625000
uterus_female_adult_53_years	chr2	171555675	171555786	171555785	+	RAMPAGE_only	25	26	169	10.000157	5.461521	chr2	171555665	171555905	SINE|MIR|MIR	-	chr2	171522476	171557646	CYBRD1|ENST00000375252.3	+	171522476,171553345,171554523	171522738,171553500,171557646	0.988166
uterus_female_adult_53_years	chr21	33909085	33909098	33909085	-	High_confidence	5	5	12	0.710070	2.732159	chr21	33908880	33909038	DNA|hAT-Charlie|MER5A1	-	chr21	33903455	33909095	ATP5PO|ENST00000418933.1	-	33903455,33903934,33907340,33909081	33903656,33904021,33907453,33909095	0.833333
uterus_female_adult_53_years	chr3	28347653	28347667	28347653	-	High_confidence	4	4	11	0.650898	3.121928	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28331688	28348629	AZI2|ENST00000334100.10	-	28331688,28332368,28336736,28337936,28338492,28340401,28348600	28331950,28332427,28336885,28338036,28338615,28340622,28348629	0.727273
uterus_female_adult_53_years	chr5	109383448	109383465	109383454	-	High_confidence	7	7	31	1.834348	4.456565	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.967742
uterus_female_adult_53_years	chr4	79493372	79493378	79493377	+	High_confidence	4	4	8	0.473380	2.807355	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.750000
uterus_female_adult_53_years	chr9	128921399	128921400	128921399	+	High_confidence	7	7	9	0.532553	3.000000	chr9	128921287	128921596	SINE|Alu|AluYj4	-	chr9	128921407	128942038	PHYHD1|ENST00000308941.9	+	128921407,128921929,128922282,128927037,128933781,128934010,128936447,128936582,128940368,128940598,128941444,128941667	128921668,128922047,128922356,128927196,128933857,128934058,128936503,128936645,128940497,128940715,128941571,128942038	0.888889
uterus_female_adult_53_years	chr14	81192598	81192645	81192644	-	RAMPAGE_only	8	8	15	0.887588	3.773557	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175715	81196301	STRG.46488.1	-	81175715,81185530,81192518,81196107	81180330,81185620,81192839,81196301	1.000000
uterus_female_adult_53_years	chr8	143020941	143020978	143020977	+	RAMPAGE_only	11	11	34	2.011866	4.418201	chr8	143021012	143021252	LINE|L2|L2b	+	chr8	143018556	143021892	LY6E|ENST00000522024.1	+	143018556,143018832,143020887,143021313,143021565	143018586,143019119,143020991,143021433,143021892	0.852941
uterus_female_adult_53_years	chr1	2594095	2594115	2594095	-	High_confidence	2	2	6	0.355035	2.584963	chr1	2593981	2594096	SINE|MIR|MIRb	-	chr1	2592654	2594073	MMEL1|ENST00000469962.1	-	2592654,2592832,2593813	2592720,2592966,2594073	0.500000
uterus_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	58	61	69	4.082904	5.125499	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.913043
uterus_female_adult_53_years	chr7	102822458	102822461	102822460	-	RAMPAGE_only	20	39	56	3.313661	4.789351	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.857143
uterus_female_adult_53_years	chr20	37297333	37297357	37297333	+	High_confidence	6	6	18	1.065105	3.836592	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	1.000000
uterus_female_adult_53_years	chr11	90251203	90251205	90251204	+	High_confidence	9	16	16	0.946760	4.000000	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.625000
uterus_female_adult_53_years	chr10	65570517	65570536	65570517	+	High_confidence	3	4	8	0.473380	3.000000	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.875000
uterus_female_adult_53_years	chr9	92720813	92720814	92720813	-	RAMPAGE_only	7	7	7	0.414208	2.521641	chr9	92720689	92720791	DNA|TcMar-Tigger|Tigger19b	-	chr9	92711362	92764801	BICD2|NM_001003800.1	-	92711362,92717796,92718538,92720299,92722655,92729023,92764504	92715463,92717948,92719582,92720755,92722808,92729236,92764801	1.000000
uterus_female_adult_53_years	chr15	65642900	65642951	65642950	+	High_confidence	5	6	27	1.597658	4.606739	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	1.000000
uterus_female_adult_53_years	chr14	21020004	21020048	21020047	-	High_confidence	5	5	13	0.769243	3.251629	chr14	21020013	21020322	SINE|Alu|AluSg4	+	chr14	21017994	21020109	NDRG2|ENST00000557416.5	-	21017994,21018203,21018456,21018626,21018762,21019115,21019638,21019919	21018038,21018239,21018504,21018663,21018814,21019160,21019742,21020109	0.846154
uterus_female_adult_53_years	chr3	33838256	33838293	33838256	+	RAMPAGE_only	7	7	21	1.242623	3.821928	chr3	33838194	33838292	LINE|Penelope|Penelope1_Vert	-	chr3	33844090	33864117	PDCD6IP|ENST00000465122.5	+	33844090,33845418,33852487,33853878,33855165,33864005	33844223,33845588,33852736,33854013,33855260,33864117	0.761905
uterus_female_adult_53_years	chr9	72363498	72363525	72363498	-	High_confidence	4	4	16	0.946760	3.750000	chr9	72363439	72363603	SINE|MIR|MIR3	+	chr9	72354457	72364346	ZFAND5|ENST00000488164.5	-	72354457,72356930,72359417,72360109,72360627,72363469	72356101,72357056,72359521,72360221,72360784,72364346	0.875000
uterus_female_adult_53_years	chr12	79455465	79455537	79455536	-	High_confidence	15	22	97	5.739735	5.845176	chr12	79455282	79455683	LTR|ERVL-MaLR|MLT1K	-	chr12	79392251	79455460	AC027288.3|ENST00000550268.2	-	79392251,79455314	79393925,79455460	0.865979
uterus_female_adult_53_years	chr11	111097297	111097352	111097351	-	High_confidence	4	4	16	0.946760	2.952820	chr11	111097091	111097502	LTR|ERV1|MER61B	-	chr11	111091931	111097357	LINC02550|ENST00000603154.1	-	111091931,111097229	111092311,111097357	0.937500
uterus_female_adult_53_years	chr19	41457385	41457413	41457412	-	RAMPAGE_only	7	8	16	0.946760	3.240224	chr19	41457330	41457753	LTR|ERVL|MER21-int	-	chr19	41454313	41455780	STRG.56025.1	-	41454313	41455780	0.750000
uterus_female_adult_53_years	chr4	86453184	86453232	86453202	-	High_confidence	93	102	554	32.781579	5.622324	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.916968
uterus_female_adult_53_years	chr11	1883348	1883349	1883348	+	RAMPAGE_only	7	7	7	0.414208	2.807355	chr11	1883278	1883384	SINE|MIR|MIR1_Amn	-	chr11	1880676	1892267	LSP1|ENST00000485341.5	+	1880676,1881431,1883418,1883931,1884279,1884499,1886731,1887236,1887473,1891772	1881363,1881596,1883560,1884024,1884323,1884581,1886866,1887314,1887576,1892267	0.714286
uterus_female_adult_53_years	chr8	2727243	2727264	2727263	+	High_confidence	6	6	20	1.183451	3.826875	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.650000
uterus_female_adult_53_years	chr1	54277603	54277604	54277603	-	RAMPAGE_only	5	5	7	0.414208	2.584963	chr1	54277464	54277668	SINE|MIR|MIR1_Amn	+	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.571429
uterus_female_adult_53_years	chr14	67886543	67886566	67886543	+	High_confidence	27	29	51	3.017799	5.209491	chr14	67886207	67886761	LTR|ERVL-MaLR|MLT1F2	-	chr14	67885732	67887550	RAD51B|ENST00000474051.1	+	67885732,67887020	67885988,67887550	0.588235
uterus_female_adult_53_years	chr18	976690	976723	976690	+	High_confidence	2	2	7	0.414208	2.807355	chr18	970858	976878	LINE|L1|L1PA3	-	chr18	976696	1159311	AP005328.1|ENST00000579835.5	+	976696,1061462,1133842,1137813,1159178	976895,1061535,1133894,1137864,1159311	0.714286
uterus_female_adult_53_years	chr9	20658312	20658349	20658348	+	High_confidence	26	42	137	8.106636	4.960671	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658308	20995955	FOCAD|NM_017794.4	+	20658308,20658690,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350,20819795,20820323,20820940,20822988,20862577,20865925,20866928,20874680,20881870,20885108,20907149,20912865,20916892,20923659,20926300,20929357,20933013,20944626,20946700,20948270,20948850,20949603,20950995,20952984,20976419,20978338,20981425,20982356,20986287,20988331,20990122,20993252,20995555	20658459,20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20789608,20819900,20820425,20821071,20823115,20862712,20865976,20867012,20874807,20882056,20885230,20907242,20912954,20916937,20923768,20926417,20929596,20933103,20944774,20946820,20948393,20948928,20949675,20951098,20953065,20976548,20978454,20981686,20982446,20986465,20988429,20990374,20993328,20995955	0.802920
uterus_female_adult_53_years	chr19	51795159	51795177	51795162	+	High_confidence	4	5	14	0.828415	3.546594	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.857143
uterus_female_adult_53_years	chr11	64226142	64226180	64226158	-	High_confidence	75	78	288	17.041687	6.921286	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.979167
uterus_female_adult_53_years	chr2	3536839	3536899	3536839	-	High_confidence	4	4	21	1.242623	4.011365	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3533223	3536869	AC108488.1|ENST00000438482.1	-	3533223,3534112,3536723	3533848,3534255,3536869	0.666667
uterus_female_adult_53_years	chr2	48479384	48479385	48479384	+	High_confidence	7	7	7	0.414208	2.807355	chr2	48478408	48479544	LINE|L1|L1MB8	-	chr2	48479536	48515240	STRG.6328.1	+	48479536,48479923,48486630,48491017,48495678,48498492,48505563,48507268,48510014,48511339,48514714	48479556,48480016,48486758,48491170,48495771,48498735,48505596,48507385,48510113,48511468,48515240	0.857143
uterus_female_adult_53_years	chr3	188947201	188947237	188947236	+	High_confidence	5	5	14	0.828415	3.238901	chr3	188947258	188947358	SINE|MIR|MIR1_Amn	+	chr3	188947213	189321061	TPRG1|ENST00000433971.5	+	188947213,189000773,189004542,189023749,189127056,189132398,189207375,189215291,189238732,189310385,189320625	188947425,189000911,189004760,189023946,189127210,189132697,189207594,189215383,189238909,189310539,189321061	0.642857
uterus_female_adult_53_years	chr16	15798662	15798665	15798664	-	RAMPAGE_only	31	60	81	4.792975	5.522788	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.790123
uterus_female_adult_53_years	chr5	133089620	133089678	133089677	+	High_confidence	11	11	31	1.834348	4.389365	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133089557	133105924	STRG.20438.2	+	133089557,133091192,133092699,133096097,133097160,133099544,133101758,133103864,133104232	133089695,133091374,133092789,133096250,133097286,133099652,133101878,133104026,133105924	1.000000
uterus_female_adult_53_years	chr15	80059915	80059933	80059918	+	High_confidence	78	100	229	13.550508	5.043147	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.986900
uterus_female_adult_53_years	chr11	93499283	93499304	93499283	-	High_confidence	2	4	10	0.591725	3.169925	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478505	93499279	STRG.39441.1	-	93478505,93499275	93479269,93499279	0.900000
uterus_female_adult_53_years	chr8	6817472	6817495	6817472	-	RAMPAGE_only	2	2	9	0.532553	2.641604	chr8	6817464	6818164	LTR|ERV1|MER67B	+	chr8	6808516	6835498	XKR5|ENST00000618990.4	-	6808516,6815806,6821868,6823520,6825164,6829168,6832716,6835435	6812339,6815918,6822038,6823730,6825349,6829306,6832900,6835498	0.555556
uterus_female_adult_53_years	chr14	101731413	101731414	101731413	+	High_confidence	13	13	14	0.828415	3.546594	chr14	101731390	101731515	DNA|hAT-Tip100|MamTip2	-	chr14	101730436	101732522	LINC00239|ENST00000556973.1	+	101730436,101731356,101731787,101732235	101730487,101731468,101731976,101732522	0.785714
uterus_female_adult_53_years	chr18	9588093	9588109	9588093	-	RAMPAGE_only	2	2	8	0.473380	2.521641	chr18	9588049	9588131	LINE|RTE-BovB|MamRTE1	-	chr18	9563432	9599633	STRG.53811.1	-	9563432,9570156,9577063,9583116,9584514,9584720,9588088,9588710,9593767,9595017,9599632	9563550,9570683,9577191,9583275,9584580,9584828,9588235,9588853,9593874,9595153,9599633	0.875000
uterus_female_adult_53_years	chr11	123061128	123061322	123061256	-	High_confidence	27	32	178	10.532710	5.638077	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.971910
uterus_female_adult_53_years	chr19	17823626	17823627	17823626	-	RAMPAGE_only	29	29	29	1.716003	4.556088	chr19	17823599	17823673	SINE|MIR|MIR3	-	chr19	17402938	17405648	BST2|ENST00000252593.6	-	17402938,17403679,17404128,17404370,17405290	17403326,17403824,17404189,17404437,17405648	1.000000
uterus_female_adult_53_years	chr5	154038408	154038409	154038408	-	High_confidence	6	6	7	0.414208	2.584963	chr5	154038304	154038498	SINE|MIR|MIR	+	chr5	154034762	154038747	FAM114A2|ENST00000521031.1	-	154034762,154038387	154034946,154038747	0.571429
uterus_female_adult_53_years	chr9	111284874	111284875	111284874	-	High_confidence	14	14	14	0.828415	2.842371	chr9	111284835	111285076	LTR|ERV1?|LTR103b_Mam	+	chr9	111139245	111284836	AL162414.1|ENST00000426204.1	-	111139245,111272812,111284619	111139619,111272965,111284836	0.785714
uterus_female_adult_53_years	chr16	20679320	20679330	20679329	+	RAMPAGE_only	8	8	18	1.065105	3.572431	chr16	20678043	20681722	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.777778
uterus_female_adult_53_years	chr14	102235451	102235481	102235451	-	High_confidence	3	3	11	0.650898	2.845351	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	1.000000
uterus_female_adult_53_years	chr12	15168504	15168559	15168558	+	High_confidence	62	64	97	5.739735	4.947139	chr12	15168584	15168676	SINE|tRNA-RTE|MamSINE1	+	chr12	15168159	15169323	STRG.40816.2	+	15168159,15168842	15168760,15169323	0.845361
uterus_female_adult_53_years	chr12	91179462	91179549	91179462	-	High_confidence	11152	11518	36724	2173.051826	7.722585	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.513179
uterus_female_adult_53_years	chr4	102431247	102431250	102431247	-	High_confidence	4	4	11	0.650898	2.921928	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.909091
uterus_female_adult_53_years	chr7	87040212	87040223	87040222	-	RAMPAGE_only	11	11	26	1.538486	4.315824	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	86891723	87059515	KIAA1324L|ENST00000423294.5	-	86891723,86892921,86897505,86907669,86908446,86909811,86912071,86912940,86914722,86918441,86919219,86925527,86926735,86938125,86938807,86940009,86942017,86944898,86947726,87059324	86891889,86893100,86897632,86907771,86908543,86910001,86912245,86913204,86914860,86918544,86919310,86925656,86926916,86938214,86938960,86940115,86942104,86945046,86947922,87059515	0.576923
uterus_female_adult_53_years	chr5	42837773	42837774	42837773	-	High_confidence	9	12	14	0.828415	3.392747	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42804668	42837661	STRG.18520.3	-	42804668,42806895,42808150,42837582	42804773,42807108,42808366,42837661	0.714286
vagina_female_adult_53_years	chr13	50082498	50082502	50082498	+	High_confidence	6	6	17	0.759136	3.381580	chr13	50082485	50082708	SINE|MIR|MIRb	-	chr13	50082170	50107218	DLEU1|ENST00000469754.2	+	50082170,50083141,50104703	50082557,50083194,50107218	0.882353
vagina_female_adult_53_years	chr3	189121610	189121634	189121633	+	RAMPAGE_only	5	5	14	0.625171	2.815072	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.857143
vagina_female_adult_53_years	chr9	110476403	110476407	110476403	-	RAMPAGE_only	4	4	10	0.446551	2.725481	chr9	110476360	110477695	LINE|L2|L2a	+	chr9	110442478	110550054	SVEP1|ENST00000467821.1	-	110442478,110445836,110446899,110450058,110451288,110455589,110457255,110458470,110458951,110465864,110468939,110471363,110472158,110476203,110479634,110481241,110482360,110483585,110489649,110496814,110499040,110503037,110512925,110513947,110546114,110549848	110443720,110446038,110447057,110450260,110451402,110455703,110457352,110458562,110459113,110466026,110469101,110471597,110472323,110476315,110479756,110481436,110482492,110483693,110489779,110496933,110499238,110503217,110513105,110514106,110546291,110550054	0.500000
vagina_female_adult_53_years	chr19	11196051	11196157	11196100	-	High_confidence	20	21	161	7.189466	6.069930	chr19	11196055	11196357	SINE|Alu|AluSq2	-	chr19	11195622	11196227	KANK2|ENST00000590095.1	-	11195622,11196049	11195881,11196227	0.962733
vagina_female_adult_53_years	chr11	65440282	65441205	65440781	+	RAMPAGE_only	175	175	3963	176.968025	7.750176	chr11	65440600	65440864	SINE|Alu|AluSx3	+	chr11	65423637	65445540	STRG.67745.5	+	65423637,65437228	65437184,65445540	1.000000
vagina_female_adult_53_years	chr5	176943337	176943366	176943355	-	RAMPAGE_only	3	3	10	0.446551	2.725481	chr5	176943235	176943320	DNA|hAT-Charlie|Charlie10	-	chr5	176905065	176970793	UIMC1|ENST00000510698.2	-	176905065,176906010,176907113,176908522,176911310,176943334,176951473,176955958,176958092,176969600,176970741	176905492,176906047,176907177,176908694,176911389,176943488,176951577,176956035,176958154,176969706,176970793	0.900000
vagina_female_adult_53_years	chr14	53217654	53217676	53217654	+	High_confidence	3	3	13	0.580516	3.026987	chr14	53216382	53218049	LTR|ERV1|LTR12C	-	chr14	53217711	53687258	AL365295.1|ENST00000456100.5	+	53217711,53318030,53369451,53687198	53218055,53318138,53369501,53687258	0.538462
vagina_female_adult_53_years	chr14	21020044	21020048	21020044	-	High_confidence	6	6	12	0.535861	3.277613	chr14	21020013	21020322	SINE|Alu|AluSg4	+	chr14	21017994	21020109	NDRG2|ENST00000557416.5	-	21017994,21018203,21018456,21018626,21018762,21019115,21019638,21019919	21018038,21018239,21018504,21018663,21018814,21019160,21019742,21020109	0.666667
vagina_female_adult_53_years	chr5	140700445	140700452	140700445	+	High_confidence	466	590	974	43.494034	5.580165	chr5	140700413	140700461	LINE|RTE-BovB|MamRTE1	-	chr5	140700463	140705881	ZMAT2|ENST00000506644.3	+	140700463,140700818,140702005,140703917,140704425,140705612	140700478,140700912,140702129,140704004,140704571,140705881	0.974333
vagina_female_adult_53_years	chr9	130079507	130079572	130079554	+	RAMPAGE_only	2	2	12	0.535861	3.084963	chr9	130079384	130079578	SINE|MIR|MIRb	+	chr9	130053924	130136123	GPR107|ENST00000610997.1	+	130053924,130075635,130076411,130077298,130079629,130083564,130086419,130090875,130092247,130099456,130100628,130101105,130104419,130107495,130110369,130114572,130124914,130127482,130128639,130135024	130054073,130075749,130076462,130077378,130079769,130083602,130086476,130090983,130092381,130099532,130100702,130101223,130104550,130107539,130110422,130114663,130124964,130127566,130128761,130136123	0.916667
vagina_female_adult_53_years	chr4	182814636	182814637	182814636	+	High_confidence	130	130	149	6.653605	5.638785	chr4	182814309	182814743	LTR|ERV1|LTR7Y	+	chr4	182814661	182816188	STRG.31662.1	+	182814661	182816188	0.973154
vagina_female_adult_53_years	chr11	65433105	65433652	65433226	+	RAMPAGE_only	64	66	1327	59.257272	6.992860	chr11	65432693	65433229	LINE|L1|L1PB3	-	chr11	65423637	65445540	STRG.67745.5	+	65423637,65437228	65437184,65445540	1.000000
vagina_female_adult_53_years	chr14	102235451	102235462	102235458	-	High_confidence	4	4	16	0.714481	3.139572	chr14	102234169	102239533	LTR|ERV1|HERVFH21-int	+	chr14	102228885	102235435	MOK|ENST00000522867.1	-	102228885,102229456,102232534,102233463,102235364	102229366,102229657,102233338,102233789,102235435	0.937500
vagina_female_adult_53_years	chr12	68836538	68836567	68836538	+	RAMPAGE_only	2	2	9	0.401896	3.000000	chr12	68836344	68836541	LINE|L1|HAL1	-	chr12	68809226	68839849	MDM2|ENST00000348801.6	+	68809226,68835828,68839273	68809292,68835984,68839849	0.666667
vagina_female_adult_53_years	chr11	65429589	65430776	65430775	+	RAMPAGE_only	213	290	5274	235.510816	7.934816	chr11	65430560	65430886	LINE|L1|L1M5	-	chr11	65423637	65445540	STRG.67745.5	+	65423637,65437228	65437184,65445540	0.999052
vagina_female_adult_53_years	chr17	61952981	61953005	61952981	-	RAMPAGE_only	5	5	17	0.759136	3.750000	chr17	61952699	61952934	SINE|Alu|AluSx3	-	chr17	61942604	62065282	MED13|ENST00000397786.6	-	61942604,61946916,61950824,61952964,61955381,61955679,61956338,61960866,61961587,61962751,61965005,61966461,61968034,61972726,61982197,61984170,61984650,61984999,61987006,61992539,61995151,62010549,62029540,62029850,62031443,62033786,62035462,62052536,62063066,62065139	61946600,61947017,61950998,61953113,61955567,61955838,61956481,61961090,61961779,61962971,61965468,61966651,61968258,61972888,61983114,61984367,61984865,61985090,61987128,61992621,61995365,62011233,62029651,62030013,62031638,62033984,62035608,62052705,62063301,62065282	0.941176
vagina_female_adult_53_years	chr3	48979389	48979390	48979389	+	RAMPAGE_only	17	17	18	0.803791	3.852169	chr3	48979400	48979531	LINE|RTE-BovB|MamRTE1	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.944444
vagina_female_adult_53_years	chr13	52236213	52236239	52236213	-	High_confidence	4	4	12	0.535861	3.251629	chr13	52236200	52241635	LINE|L1|L1PA16	+	chr13	52219593	52235280	TPTE2P2|ENST00000608790.5	-	52219593,52223238,52227004,52229325,52233063,52235152	52219630,52223331,52227096,52229431,52233144,52235280	0.750000
vagina_female_adult_53_years	chr17	47056716	47056736	47056735	-	RAMPAGE_only	7	7	12	0.535861	3.027169	chr17	47056423	47057848	LTR|ERV1|LTR12C	-	chr17	46984044	47067452	AC068152.1|ENST00000575930.5	-	46984044,47021581,47033277,47035043,47056459,47067413	46984069,47021721,47033381,47035126,47056753,47067452	0.666667
vagina_female_adult_53_years	chr17	50737264	50737319	50737264	+	RAMPAGE_only	1	1	10	0.446551	2.947703	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50719598	50743792	LUC7L3|ENST00000504563.6	+	50719598,50736959,50737286,50740305,50741101,50741656,50743705	50719831,50737026,50737479,50740345,50741246,50741731,50743792	0.500000
vagina_female_adult_53_years	chr9	89479889	89479890	89479889	-	High_confidence	60	60	62	2.768614	4.635813	chr9	89479487	89480983	LTR|ERV1|LTR12C	-	chr9	89402924	89479890	SEMA4D|ENST00000540475.5	-	89402924,89405350,89455887,89479571	89403016,89405699,89455953,89479890	0.935484
vagina_female_adult_53_years	chr13	30376953	30376971	30376964	-	High_confidence	8	9	22	0.982411	3.572624	chr13	30376889	30377180	LTR|ERVL|LTR67B	+	chr13	30374002	30376964	LINC00426|ENST00000416261.1	-	30374002,30375466,30376826	30374093,30375776,30376964	0.727273
vagina_female_adult_53_years	chr22	35896684	35896707	35896688	-	RAMPAGE_only	5	6	20	0.893101	4.142664	chr22	35896673	35896791	LINE|L2|L2	+	chr22	35743982	35938897	RBFOX2|ENST00000359369.8	-	35743982,35745922,35746472,35750425,35756104,35759887,35761201,35761414,35765422,35768256,35778024,35781599,35809779,35938846	35744249,35745995,35746561,35750457,35756144,35760020,35761294,35761468,35765483,35768349,35778078,35781743,35810004,35938897	0.700000
vagina_female_adult_53_years	chr19	51795150	51795187	51795186	+	High_confidence	3	3	9	0.401896	3.169925	chr19	51794745	51795262	LTR|ERV1|LTR54	+	chr19	51795162	51826189	FPR3|ENST00000339223.4	+	51795162,51823738	51795331,51826189	0.777778
vagina_female_adult_53_years	chr1	161206408	161206445	161206444	+	High_confidence	5	5	15	0.669826	3.521641	chr1	161206361	161206444	SINE|tRNA|LFSINE_Vert	+	chr1	161206408	161209727	NDUFS2|ENST00000473321.1	+	161206408,161209192,161209482	161206597,161209313,161209727	0.800000
vagina_female_adult_53_years	chr11	68773414	68773415	68773414	-	RAMPAGE_only	7	8	10	0.446551	2.725481	chr11	68773373	68773449	LINE|CR1|L3	+	chr11	68754619	68815503	CPT1A|ENST00000540367.5	-	68754619,68759568,68760224,68761534,68762626,68773264,68775315,68780639,68781770,68784814,68793314,68794803,68796855,68799217,68803999,68807466,68812436,68815333	68754851,68759661,68760338,68761687,68762761,68773429,68775432,68780745,68781959,68785010,68793402,68794911,68796933,68799355,68804101,68807638,68812576,68815503	0.700000
vagina_female_adult_53_years	chr15	57451497	57451576	57451564	+	RAMPAGE_only	22	28	177	7.903947	5.434138	chr15	57451561	57451614	SINE|MIR|MIR3	+	chr15	57376504	57550727	CGNL1|ENST00000281282.5	+	57376504,57437984,57440376,57442372,57451499,57452140,57453682,57461679,57516779,57518392,57523488,57524580,57528653,57531689,57543695,57544472,57545591,57546075,57547354	57376567,57439601,57440471,57442478,57451601,57452289,57453818,57461892,57516986,57518497,57523641,57524751,57528815,57531779,57543779,57544597,57545700,57546239,57550727	0.988701
vagina_female_adult_53_years	chr6	127330828	127330845	127330844	-	High_confidence	3	4	9	0.401896	2.947703	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.888889
vagina_female_adult_53_years	chr7	80369623	80369635	80369634	+	High_confidence	3	3	6	0.267930	2.584963	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369574	80674409	CD36|ENST00000435819.5	+	80369574,80486466,80487685,80546190,80646087,80646651,80656539,80661062,80662989,80664405,80666442,80669952,80670976,80671921,80672769,80673354,80673982	80369781,80486587,80487781,80546267,80646181,80646860,80656700,80661210,80663169,80664497,80666489,80670022,80671164,80672040,80672843,80673409,80674409	0.833333
vagina_female_adult_53_years	chr3	134199610	134199613	134199611	-	RAMPAGE_only	2	4	7	0.312585	2.584963	chr3	134199454	134199613	SINE|MIR|MIRb	+	chr3	134159282	134250744	STRG.24147.5	-	134159282,134175608,134175929,134177940,134183001,134188836,134191848,134195081,134207471,134209694,134211507,134222417,134250422	134159373,134175768,134176039,134178073,134183071,134188923,134191983,134202874,134207525,134209829,134211607,134222539,134250744	0.857143
vagina_female_adult_53_years	chr1	33021381	33021417	33021381	-	RAMPAGE_only	6	6	40	1.786203	4.701746	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.875000
vagina_female_adult_53_years	chr20	44532569	44532570	44532569	+	High_confidence	5	6	7	0.312585	2.584963	chr20	44532482	44533091	LINE|L2|L2c	-	chr20	44531915	44624247	PKIG|ENST00000372887.5	+	44531915,44582584,44589796,44614533,44623932	44531978,44582731,44589866,44614707,44624247	0.714286
vagina_female_adult_53_years	chr2	240012385	240012388	240012385	-	RAMPAGE_only	12	12	27	1.205687	4.208410	chr2	240012260	240012484	LINE|L2|L2a	+	chr2	239960740	240025323	NDUFA10|ENST00000485344.6	-	239960740,239990073,240005209,240007315,240011616,240018552,240021196,240022171,240025226	239961186,239990182,240005295,240007370,240014860,240018639,240021412,240022340,240025323	1.000000
vagina_female_adult_53_years	chr15	51037206	51037236	51037206	+	High_confidence	2	3	10	0.446551	3.169925	chr15	51031621	51037649	LINE|L1|L1PA3	-	chr15	51037276	51278252	STRG.83883.2	+	51037276,51277982	51037681,51278252	0.700000
vagina_female_adult_53_years	chr2	38083051	38083113	38083053	+	High_confidence	5	8	19	0.848446	3.681881	chr2	38082952	38083100	LTR|ERV1|HERVH-int	-	chr2	38083172	38131567	CYP1B1-AS1|ENST00000627172.2	+	38083172,38131510	38084110,38131567	0.736842
vagina_female_adult_53_years	chr9	62376632	62376660	62376632	+	High_confidence	10	10	21	0.937756	4.037401	chr9	62376600	62376639	SINE|MIR|MIRb	+	chr9	62376516	62434385	FGF7P6|ENST00000452826.2	+	62376516,62432875	62376813,62434385	0.809524
vagina_female_adult_53_years	chr4	122347337	122347338	122347337	+	RAMPAGE_only	23	23	23	1.027067	3.567040	chr4	122347271	122347390	SINE|MIR|MIRc	+	chr4	122324463	122362752	KIAA1109|ENST00000306802.8	+	122324463,122325229,122325854,122328103,122331325,122333628,122334343,122336191,122336880,122339206,122343409,122344381,122346622,122347521,122348566,122349157,122349449,122349856,122352903,122353813,122355795,122356620,122359556,122362030	122324536,122325320,122325917,122328357,122331541,122333809,122334440,122336353,122337020,122339408,122343610,122344561,122346760,122347779,122348717,122349315,122349642,122350074,122353155,122354017,122355990,122356755,122359722,122362752	0.913043
vagina_female_adult_53_years	chr7	100349766	100349771	100349766	+	RAMPAGE_only	5	5	10	0.446551	2.947703	chr7	100349364	100349910	LTR|ERV1|LTR49	-	chr7	100338176	100350158	STAG3L5P|ENST00000493499.1	+	100338176,100338772,100345864,100349716	100338264,100338889,100345968,100350158	0.600000
vagina_female_adult_53_years	chr7	106269435	106269504	106269481	-	RAMPAGE_only	5	5	47	2.098788	4.937152	chr7	106269454	106269610	LINE|RTE-X|L4_B_Mam	+	chr7	106269154	106284632	NAMPT|ENST00000484527.5	-	106269154,106272529,106274945,106277022,106284347	106269312,106272658,106275049,106277179,106284632	0.510638
vagina_female_adult_53_years	chr18	7946878	7946898	7946897	+	High_confidence	8	8	24	1.071722	4.142915	chr18	7946896	7947212	LTR|ERVL|LTR79	+	chr18	7946869	8069712	PTPRM|ENST00000578916.2	+	7946869,7949180,7955120,8069685	7946977,7949355,7955414,8069712	0.750000
vagina_female_adult_53_years	chr12	643625	643636	643635	-	High_confidence	10	10	48	2.143443	5.072369	chr12	643520	643605	SINE|MIR|MIRb	-	chr12	565359	643636	NINJ2|ENST00000433832.2	-	565359,643510	566178,643636	0.687500
vagina_female_adult_53_years	chr11	46090456	46090475	46090456	-	RAMPAGE_only	4	4	9	0.401896	2.500000	chr11	46090367	46090495	LINE|CR1|L3	+	chr11	45971347	46092205	PHF21A|ENST00000531959.5	-	45971347,45979759,46076753,46079133,46084165,46092182	45971367,45979966,46076840,46079166,46084302,46092205	0.888889
vagina_female_adult_53_years	chr17	60887284	60887290	60887284	+	High_confidence	3	3	8	0.357241	2.750000	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887278	60989988	BCAS3|ENST00000586484.1	+	60887278,60889694,60902619,60910531,60924406,60947218,60989970	60887447,60889771,60902703,60910702,60924500,60947352,60989988	0.500000
vagina_female_adult_53_years	chr20	50131130	50131151	50131139	-	High_confidence	6	6	14	0.625171	3.546594	chr20	50131036	50131209	LTR|ERVL|LTR79	+	chr20	50123769	50131132	TMEM189|ENST00000371656.3	-	50123769,50127974,50129545,50130855,50131019	50125179,50128187,50129690,50130947,50131132	0.928571
vagina_female_adult_53_years	chr11	123060135	123060256	123060255	-	High_confidence	92	100	537	23.979770	5.974506	chr11	123060105	123060228	LINE|RTE-BovB|MamRTE1	-	chr11	123057497	123060386	HSPA8|ENST00000534319.5	-	123057497,123058251,123058631,123059058,123059472,123060115	123057919,123058484,123058830,123059261,123060028,123060386	0.992551
vagina_female_adult_53_years	chr10	13137063	13137198	13137131	+	RAMPAGE_only	71	84	489	21.836327	4.607338	chr10	13136997	13137298	SINE|Alu|AluSz	+	chr10	13100224	13138291	OPTN|ENST00000378747.7	+	13100224,13108137,13109111,13110273,13112452,13116266,13118887,13122384,13123994,13125417,13125945,13127744,13132066,13133501,13136744	13100302,13108289,13109288,13110476,13112635,13116340,13119040,13122487,13124110,13125567,13126039,13127903,13132197,13133581,13138291	0.987730
vagina_female_adult_53_years	chr16	71750468	71750488	71750468	-	High_confidence	2	2	9	0.401896	2.500000	chr16	71750413	71750715	SINE|Alu|AluSx3	-	chr16	71748267	71751337	AP1G1|ENST00000562934.1	-	71748267,71749893,71750209,71751262	71748378,71749983,71750480,71751337	0.777778
vagina_female_adult_53_years	chr7	6590236	6590286	6590246	+	High_confidence	6	6	37	1.652237	4.411585	chr7	6590229	6590483	DNA|hAT-Charlie|Charlie17b	+	chr7	6590020	6608726	C7orf26|NM_024067.3	+	6590020,6591645,6594434,6599828,6602100,6607959	6590475,6591867,6594600,6600356,6602140,6608726	0.918919
vagina_female_adult_53_years	chr6	79631273	79631330	79631328	+	High_confidence	95	115	404	18.040646	6.678437	chr6	79631260	79631458	LINE|L1|L1M4b	+	chr6	79631282	79703659	SH3BGRL2|ENST00000369838.5	+	79631282,79673613,79696484,79699497	79631506,79673799,79696565,79703659	0.992574
vagina_female_adult_53_years	chr10	73795582	73795627	73795626	+	High_confidence	6	6	21	0.937756	3.458525	chr10	73795675	73795984	SINE|Alu|AluJb	+	chr10	73796370	73797450	ZSWIM8|ENST00000487278.1	+	73796370,73796773,73797112,73797376	73796403,73797014,73797271,73797450	1.000000
vagina_female_adult_53_years	chr21	13954077	13954114	13954077	-	RAMPAGE_only	7	7	31	1.384307	4.440224	chr21	13953734	13954027	SINE|Alu|AluYm1	-	chr21	13939373	13962785	ANKRD20A11P|ENST00000432875.5	-	13939373,13940814,13945038,13951066,13951231,13962739	13939428,13940978,13945143,13951139,13951260,13962785	0.838710
vagina_female_adult_53_years	chr4	76234495	76234534	76234533	-	High_confidence	4	4	11	0.491206	2.521928	chr4	76234334	76234657	LTR|ERV1|MER61A	-	chr4	76158759	76234536	SCARB2|ENST00000638295.1	-	76158759,76163224,76166249,76168402,76169866,76174143,76175790,76176436,76179516,76180953,76195706,76234302	76161751,76163383,76166301,76168476,76169985,76174313,76175910,76176528,76179705,76181101,76195864,76234536	0.909091
vagina_female_adult_53_years	chr12	123317515	123317527	123317515	-	RAMPAGE_only	4	4	9	0.401896	2.947703	chr12	123317464	123317863	LTR|ERVL-MaLR|MLT1J	+	chr12	123289108	123350441	SBNO1|ENST00000420886.6	-	123289108,123297977,123302823,123304581,123309309,123309488,123309709,123311054,123313619,123315372,123315547,123317220,123319899,123320431,123320698,123321534,123323679,123325501,123326151,123327425,123327706,123327891,123328733,123330418,123331241,123334052,123336394,123340987,123345257,123348028,123350309	123296050,123298171,123302900,123304719,123309402,123309583,123309856,123311129,123313719,123315444,123315660,123317356,123320031,123320607,123320866,123321732,123323831,123325599,123326334,123327579,123327812,123328027,123328895,123330509,123331375,123334213,123336491,123341088,123345570,123348133,123350441	0.777778
vagina_female_adult_53_years	chr1	201331741	201332087	201332086	+	RAMPAGE_only	51	57	465	20.764605	7.097676	chr1	201331955	201332089	LINE|L2|L2a	-	chr1	201283451	201332993	PKP1|ENST00000367324.7	+	201283451,201293941,201313165,201316552,201317571,201318617,201320266,201321977,201323012,201324427,201324940,201325753,201328761,201330073	201283904,201294045,201313560,201316697,201317779,201318795,201320381,201322133,201323189,201324581,201325127,201325838,201328868,201332993	0.997849
vagina_female_adult_53_years	chr14	57274833	57274844	57274833	+	RAMPAGE_only	2	3	8	0.357241	2.521641	chr14	57274780	57274879	LINE|CR1|L3	-	chr14	57278421	57283243	AP5M1|ENST00000556723.1	+	57278421,57280194,57282088,57282933,57283111	57278608,57280422,57282228,57283019,57283243	0.875000
vagina_female_adult_53_years	chr4	3390567	3390668	3390667	+	High_confidence	10	12	43	1.920168	4.334184	chr4	3390637	3390750	SINE|MIR|MIR3	+	chr4	3390809	3391913	STRG.26805.1	+	3390809	3391913	0.860465
vagina_female_adult_53_years	chr12	113334768	113334807	113334806	-	High_confidence	5	5	18	0.803791	3.381580	chr12	113334758	113334823	LINE|L2|L2b	-	chr12	113307799	113334833	SLC8B1|ENST00000553238.5	-	113307799,113310233,113315334,113316525,113316941,113318963,113320580,113320849,113321055,113321195,113332722,113334442	113307912,113310355,113315476,113316656,113317001,113319071,113320686,113320907,113321108,113321348,113332960,113334833	0.944444
vagina_female_adult_53_years	chr7	111482902	111482903	111482902	-	High_confidence	8	9	9	0.401896	2.500000	chr7	111482850	111483194	LINE|L1|L1MC4a	+	chr7	111480643	111482781	STRG.49889.1	-	111480643	111482781	0.666667
vagina_female_adult_53_years	chr3	193837447	193837479	193837470	-	High_confidence	41	44	241	10.761871	6.729671	chr3	193837444	193837604	LTR|ERVL-MaLR|MLT1N2	+	chr3	193828718	193837480	STRG.26186.1	-	193828718,193837351	193833856,193837480	0.551867
vagina_female_adult_53_years	chr14	58424065	58424070	58424066	-	RAMPAGE_only	5	6	12	0.535861	3.277613	chr14	58423952	58424081	LINE|CR1|L3	-	chr14	58408663	58427114	TIMM9|ENST00000556007.6	-	58408663,58410842,58411906,58424007,58427053	58409099,58410938,58411971,58424095,58427114	0.916667
vagina_female_adult_53_years	chr3	52615360	52615378	52615372	-	High_confidence	2	2	7	0.312585	2.584963	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.857143
vagina_female_adult_53_years	chr16	57181688	57181701	57181700	-	RAMPAGE_only	4	4	9	0.401896	3.169925	chr16	57181393	57182241	LTR|ERVL|MER21B	-	chr16	57167130	57186039	FAM192A|ENST00000565458.5	-	57167130,57172250,57172775,57173727,57178501,57185820	57167226,57172372,57172874,57173869,57178852,57186039	0.666667
vagina_female_adult_53_years	chr8	53523890	53523902	53523890	-	High_confidence	3	3	8	0.357241	3.000000	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
vagina_female_adult_53_years	chr6	70485787	70485807	70485806	+	RAMPAGE_only	8	8	15	0.669826	3.521641	chr6	70485838	70485936	SINE|MIR|MIR3	+	chr6	70482856	70561171	STRG.40729.5	+	70482856,70491033,70502635,70522512,70523966,70524342,70528291,70533159,70533756,70536259,70538290,70556749,70559715	70486244,70491083,70502791,70522586,70524121,70526698,70528452,70533251,70533854,70536411,70538401,70556863,70561171	0.933333
vagina_female_adult_53_years	chr15	51901490	51901491	51901490	+	High_confidence	7	7	7	0.312585	2.807355	chr15	51900843	51901546	LINE|L1|L1MB7	-	chr15	51901265	51911124	TMOD3|ENST00000560725.1	+	51901265,51901891,51908775,51911039	51901492,51902036,51908862,51911124	0.857143
vagina_female_adult_53_years	chr6	161101759	161101766	161101759	+	High_confidence	6	6	10	0.446551	3.121928	chr6	161101708	161101814	DNA|hAT-Charlie|MER20	-	chr6	161101032	161117384	MAP3K4|ENST00000536852.1	+	161101032,161102698,161106513,161107898,161108742,161109754,161111835,161112667,161115122,161116849	161101992,161102779,161106705,161107969,161108859,161109914,161111958,161112774,161115302,161117384	0.900000
vagina_female_adult_53_years	chr17	39494621	39494626	39494625	+	RAMPAGE_only	4	4	8	0.357241	2.807355	chr17	39494618	39494687	DNA|Merlin|Merlin1_HS	-	chr17	39462038	39535146	CDK12|ENST00000447079.4	+	39462038,39470878,39490556,39492750,39494523,39501249,39509704,39511528,39515730,39517439,39519955,39524673,39525863,39530603	39463117,39471763,39490733,39492890,39494694,39501439,39509761,39511630,39515808,39517556,39520087,39524885,39526316,39535146	0.875000
vagina_female_adult_53_years	chr11	73217577	73217619	73217577	+	High_confidence	2	2	14	0.625171	3.392747	chr11	73217526	73217658	LINE|L2|L2b	-	chr11	73217554	73238958	STRG.68101.4	+	73217554,73227980,73234155	73217709,73228175,73238958	0.928571
vagina_female_adult_53_years	chr7	76109087	76109092	76109087	-	High_confidence	6	6	17	0.759136	3.572469	chr7	76108929	76109272	LTR|ERV1|MER61A	-	chr7	76108230	76108938	STRG.48152.1	-	76108230,76108434,76108868	76108309,76108762,76108938	0.588235
vagina_female_adult_53_years	chr21	13880336	13880361	13880360	-	High_confidence	4	4	16	0.714481	3.240224	chr21	13879017	13880326	LTR|ERVL-MaLR|MSTA-int	-	chr21	13878917	13881078	STRG.102481.1	-	13878917	13881078	0.875000
vagina_female_adult_53_years	chr12	112039690	112039721	112039690	-	RAMPAGE_only	8	8	16	0.714481	3.906891	chr12	112039466	112039729	LINE|L2|L2c	+	chr12	112027787	112108785	NAA25|ENST00000552527.5	-	112027787,112033232,112039228,112042038,112043087,112043624,112047664,112048291,112053557,112054387,112060269,112061180,112068879,112071894,112074674,112075677,112078187,112078633,112081059,112087682,112090725,112093050,112108715	112029653,112033379,112040578,112042104,112043211,112043868,112047790,112048443,112053657,112054568,112060359,112061388,112068992,112072064,112074764,112075789,112078266,112078741,112081134,112087801,112090864,112093136,112108785	0.937500
vagina_female_adult_53_years	chr1	97904654	97904676	97904675	-	RAMPAGE_only	12	12	26	1.161032	4.251629	chr1	97904357	97904849	LTR|ERV1|MER34B	+	chr1	97077742	97921023	DPYD|ENST00000370192.7	-	97077742,97082329,97098488,97193068,97234851,97305258,97306176,97373560,97382392,97450058,97515725,97549559,97573759,97593217,97595058,97679094,97691716,97699350,97721509,97740391,97828113,97883263,97920883	97079146,97082470,97098632,97193248,97234994,97305378,97306297,97373644,97382461,97450223,97515941,97549744,97573970,97593387,97595166,97679182,97691798,97699547,97721671,97740479,97828196,97883374,97921023	0.653846
vagina_female_adult_53_years	chr17	19386313	19386388	19386333	-	High_confidence	21	24	61	2.723959	5.159925	chr17	19386184	19386323	SINE|MIR|MIRb	-	chr17	19383441	19386932	MFAP4|ENST00000497081.6	-	19383441,19385098,19385357,19386309,19386759	19384709,19385281,19385454,19386464,19386932	1.000000
vagina_female_adult_53_years	chr16	11774340	11774362	11774340	-	High_confidence	2	4	11	0.491206	3.121928	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	0.636364
vagina_female_adult_53_years	chr1	89272843	89272883	89272867	-	High_confidence	13	13	106	4.733437	5.590682	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89258949	89272861	GBP5|NM_052942.3	-	89258949,89262219,89262682,89263735,89264685,89266345,89266956,89267416,89268728,89269365,89270754,89272451	89260817,89262401,89262785,89263948,89264966,89266588,89267153,89267526,89268856,89269574,89270862,89272861	0.943396
vagina_female_adult_53_years	chr19	49539151	49539158	49539151	+	RAMPAGE_only	7	8	12	0.535861	2.792481	chr19	49539100	49539163	LINE|L1|X9_LINE	-	chr19	49527617	49543638	RCN3|ENST00000270645.7	+	49527617,49528466,49534192,49537032,49539118,49542552,49543105	49528058,49528714,49534395,49537205,49539179,49542752,49543638	1.000000
vagina_female_adult_53_years	chr9	92536651	92536675	92536674	-	High_confidence	9	9	32	1.428962	4.327820	chr9	92536666	92536833	SINE|MIR|MIRb	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	1.000000
vagina_female_adult_53_years	chr14	38948236	38948246	38948245	-	High_confidence	3	3	7	0.312585	2.807355	chr14	38947953	38948271	DNA|TcMar-Tigger|Tigger2a	-	chr14	38749342	38948239	LINC00639|ENST00000554732.5	-	38749342,38835230,38835541,38890740,38916781,38948177	38749654,38835398,38839204,38890798,38916882,38948239	1.000000
vagina_female_adult_53_years	chr2	231075344	231075345	231075344	+	RAMPAGE_only	9	9	10	0.446551	3.169925	chr2	231075197	231075358	LINE|L1|L1M8	-	chr2	231060355	231172824	PSMD1|ENST00000619128.4	+	231060355,231061264,231062247,231062505,231066905,231070024,231072188,231075510,231077033,231078658,231079535,231080140,231082882,231083566,231085018,231087116,231138735,231146239,231153563,231161339,231163634,231165199,231165870,231170565,231172534	231060369,231061310,231062321,231062675,231067111,231070168,231072415,231075571,231077162,231078747,231079614,231080314,231082994,231083763,231085114,231087181,231138850,231146356,231153666,231161509,231163727,231165286,231166017,231170721,231172824	0.800000
vagina_female_adult_53_years	chr22	26512099	26512115	26512099	-	High_confidence	2	2	6	0.267930	2.584963	chr22	26511937	26512164	SINE|MIR|MIRb	-	chr22	26491926	26512377	TFIP11|ENST00000407431.5	-	26491926,26494138,26494796,26496072,26496720,26498868,26499103,26501899,26503665,26506302,26506774,26510063,26510616,26512098	26492368,26494304,26494939,26496316,26496889,26498975,26499631,26502052,26503793,26506459,26506928,26510281,26510702,26512377	1.000000
vagina_female_adult_53_years	chr17	4143196	4143215	4143199	+	High_confidence	32	33	69	3.081200	5.082859	chr17	4143244	4143544	SINE|Alu|AluSq	+	chr17	4143210	4157572	CYB5D2|ENST00000575251.5	+	4143210,4149890,4154673,4156865	4143763,4150031,4154860,4157572	1.000000
vagina_female_adult_53_years	chr19	1880086	1880097	1880087	-	High_confidence	3	5	10	0.446551	2.721928	chr19	1880079	1880146	DNA|hAT-Ac|OldhAT1	+	chr19	1877203	1880017	ABHD17A|ENST00000592757.1	-	1877203,1877507,1878663,1879920	1877425,1877687,1878904,1880017	0.600000
vagina_female_adult_53_years	chr6	30493546	30493839	30493639	+	RAMPAGE_only	35	38	557	24.872871	6.741777	chr6	30493513	30493719	LTR|ERVL-MaLR|MSTC	+	chr6	30489466	30494205	HLA-E|ENST00000376630.4	+	30489466,30489725,30490239,30491136,30491536,30492403,30492540,30492748	30489595,30489995,30490515,30491412,30491653,30492436,30492583,30494205	0.996409
vagina_female_adult_53_years	chr16	4355592	4355593	4355592	-	High_confidence	37	37	37	1.652237	4.831075	chr16	4355468	4355768	SINE|Alu|AluY	-	chr16	4340250	4355607	PAM16|ENST00000576217.1	-	4340250,4340919,4341367,4343206,4351231,4355588	4340405,4340985,4341504,4343291,4351262,4355607	0.837838
vagina_female_adult_53_years	chr6	80453183	80453193	80453183	+	High_confidence	2	2	8	0.357241	2.807355	chr6	80453039	80453457	LTR|ERVL-MaLR|MLT1I	-	chr6	80453198	80463207	AL359715.1|ENST00000443221.2	+	80453198,80454109,80462871	80453261,80454227,80463207	0.875000
vagina_female_adult_53_years	chr4	119217551	119217579	119217569	+	RAMPAGE_only	3	3	16	0.714481	3.640224	chr4	119217495	119218269	LINE|L2|L2a	-	chr4	119213178	119239312	USP53|ENST00000510737.1	+	119213178,119214069,119217549,119235289,119239217	119213218,119214222,119217673,119235411,119239312	0.500000
vagina_female_adult_53_years	chr12	7920813	7920864	7920834	-	RAMPAGE_only	4	4	18	0.803791	3.947703	chr12	7920830	7920912	LINE|L1|L1PA8	+	chr12	7919230	7936167	SLC2A3|ENST00000486749.5	-	7919230,7922820,7924409,7925843,7929683,7931244,7932986,7933809,7936019	7921631,7923024,7924511,7925948,7930642,7931485,7933147,7933902,7936167	0.944444
vagina_female_adult_53_years	chr11	119046630	119046649	119046630	-	RAMPAGE_only	2	2	8	0.357241	2.807355	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	0.875000
vagina_female_adult_53_years	chr2	53936105	53936135	53936105	-	RAMPAGE_only	6	6	13	0.580516	2.792481	chr2	53935897	53936066	SINE|Alu|AluSx1	-	chr2	53932055	53933169	PSME4|ENST00000475694.1	-	53932055,53932667	53932100,53933169	0.692308
vagina_female_adult_53_years	chr9	19123821	19123822	19123821	-	RAMPAGE_only	6	6	6	0.267930	2.584963	chr9	19123738	19124032	SINE|Alu|AluSc	+	chr9	19123234	19127476	PLIN2|ENST00000380465.7	-	19123234,19123564,19126113,19126396,19127418	19123476,19123647,19126309,19126448,19127476	0.833333
vagina_female_adult_53_years	chr4	113537392	113537425	113537410	-	RAMPAGE_only	4	4	14	0.625171	3.546594	chr4	113537398	113537465	DNA|hAT-Ac|OldhAT1	-	chr4	113460146	113517643	CAMK2D|ENST00000509594.1	-	113460146,113465528,113500462,113509637,113513327,113513829,113515068,113517562	113460241,113465604,113500508,113509672,113513370,113513913,113515191,113517643	0.571429
vagina_female_adult_53_years	chr12	126772317	126772337	126772336	-	High_confidence	7	7	14	0.625171	3.392747	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126748055	126772356	LINC00944|ENST00000542248.5	-	126748055,126760931,126763414,126772078	126748127,126761045,126763498,126772356	0.857143
vagina_female_adult_53_years	chr7	99574456	99574463	99574456	+	RAMPAGE_only	8	8	14	0.625171	3.546594	chr7	99574425	99574541	SINE|Alu|AluJr	-	chr7	99571347	99576453	ZNF655|ENST00000419215.2	+	99571347,99571687,99572244	99571379,99571792,99576453	0.928571
vagina_female_adult_53_years	chr1	46804345	46804355	46804345	+	RAMPAGE_only	6	6	12	0.535861	3.251629	chr1	46804315	46804762	LINE|L2|L2c	-	chr1	46806806	46813988	CYP4B1|ENST00000526297.5	+	46806806,46810807,46811139,46812495,46813481,46813908	46806847,46810949,46811184,46812623,46813606,46813988	0.500000
vagina_female_adult_53_years	chr6	2968831	2968865	2968831	-	RAMPAGE_only	3	3	12	0.535861	3.251629	chr6	2968783	2968841	LINE|L1|HAL1	-	chr6	2948162	2970743	SERPINB6|ENST00000644178.1	-	2948162,2948913,2953043,2954591,2955523,2959167,2966399	2948699,2949069,2953186,2954709,2955670,2959342,2970743	1.000000
vagina_female_adult_53_years	chr4	102578994	102579033	102579032	+	RAMPAGE_only	4	5	15	0.669826	3.323231	chr4	102579059	102579243	SINE|MIR|MIRb	+	chr4	102577863	102593568	NFKB1|ENST00000508584.1	+	102577863,102578880,102580534,102582865,102584681,102593424	102577975,102579039,102580639,102582957,102584820,102593568	0.866667
vagina_female_adult_53_years	chrX	151960040	151960054	151960053	-	RAMPAGE_only	3	3	9	0.401896	2.750000	chrX	151960042	151960104	SINE|MIR|MIRb	+	chrX	151958645	151962593	GABRE|ENST00000476016.1	-	151958645,151959838,151962422	151959149,151959976,151962593	0.777778
vagina_female_adult_53_years	chr7	88283905	88283913	88283905	-	RAMPAGE_only	3	3	8	0.357241	2.750000	chr7	88283844	88283877	LINE|RTE-BovB|MamRTE1	-	chr7	88281482	88306880	STEAP4|ENST00000414498.1	-	88281482,88283813,88290915,88306791	88283168,88284271,88291014,88306880	1.000000
vagina_female_adult_53_years	chr7	30568893	30568913	30568893	-	High_confidence	7	7	14	0.625171	3.521641	chr7	30568321	30569340	LTR|ERV1|MER4-int	+	chr7	30563660	30569220	STRG.46484.8	-	30563660,30568832	30563998,30569220	0.642857
vagina_female_adult_53_years	chr15	30624362	30624368	30624367	+	High_confidence	8	9	19	0.848446	3.471354	chr15	30624139	30624446	SINE|Alu|AluSg7	+	chr15	30624493	30626266	ARHGAP11B|ENST00000567449.5	+	30624493,30624722,30625353	30624612,30624816,30626266	1.000000
vagina_female_adult_53_years	chr5	139342613	139342614	139342613	+	High_confidence	10	10	11	0.491206	2.921928	chr5	139342638	139342693	SINE|MIR|MIR3	+	chr5	139342450	139369080	PAIP2|ENST00000510080.1	+	139342450,139363758,139364563,139368732	139342616,139363922,139364743,139369080	0.909091
vagina_female_adult_53_years	chr1	54277363	54277365	54277364	-	RAMPAGE_only	12	14	19	0.848446	3.932138	chr1	54277163	54277341	DNA|hAT-Charlie|MER117	-	chr1	54239095	54257266	SSBP3|ENST00000420121.5	-	54239095,54240904,54241473,54242163,54243234,54251615,54251793,54257126	54239199,54240959,54241509,54242212,54243299,54251692,54251860,54257266	0.894737
vagina_female_adult_53_years	chr1	179856147	179856160	179856159	-	RAMPAGE_only	3	3	8	0.357241	2.750000	chr1	179855896	179856189	SINE|Alu|AluSz	+	chr1	179843930	179877790	STRG.6595.1	-	179843930,179847534,179850844,179852631,179856057,179865435,179877238,179877692	179846828,179847636,179851363,179852811,179856170,179865854,179877373,179877790	1.000000
vagina_female_adult_53_years	chr21	37083992	37083993	37083992	+	High_confidence	11	11	13	0.580516	3.026987	chr21	37083879	37084118	DNA|hAT-Charlie|MER113B	+	chr21	37083625	37093402	TTC3|ENST00000484047.5	+	37083625,37087246,37087832,37088798,37090232,37091292,37093308	37084331,37087401,37088346,37088886,37090286,37091626,37093402	0.846154
vagina_female_adult_53_years	chr3	139344537	139344573	139344547	+	High_confidence	27	27	55	2.456029	5.097299	chr3	139344374	139344707	LINE|L2|L2b	-	chr3	139344564	139357014	MRPS22|ENST00000478464.5	+	139344564,139346877,139348159,139350178,139350976,139352646,139355681,139356918	139344718,139347044,139348324,139350322,139351060,139352792,139355790,139357014	0.927273
vagina_female_adult_53_years	chr7	64989995	64990041	64990025	-	RAMPAGE_only	4	4	14	0.625171	3.085055	chr7	64989792	64990099	SINE|Alu|AluSc	+	chr7	64971775	64991036	ZNF117|ENST00000282869.10	-	64971775,64981386,64981983,64989946	64979536,64981482,64982116,64991036	0.928571
vagina_female_adult_53_years	chr5	108768104	108768105	108768104	+	RAMPAGE_only	7	7	9	0.401896	2.947703	chr5	108768042	108768250	LINE|CR1|L3b	-	chr5	108748966	108843001	FER|ENST00000502752.1	+	108748966,108768092,108782662,108798123,108832769,108835707,108841830,108842261	108748993,108768238,108782755,108798389,108832943,108835807,108841868,108843001	1.000000
vagina_female_adult_53_years	chr1	195722378	195722382	195722381	-	High_confidence	134	134	235	10.493940	5.734599	chr1	195721970	195723453	LTR|ERV1|LTR12C	-	chr1	195568807	195722368	STRG.6986.1	-	195568807,195690604,195721819	195568995,195690765,195722368	0.944681
vagina_female_adult_53_years	chr17	69315063	69315072	69315071	-	High_confidence	11	15	22	0.982411	3.845351	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	1.000000
vagina_female_adult_53_years	chrX	107156165	107156167	107156166	-	RAMPAGE_only	8	12	18	0.803791	3.572469	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.833333
vagina_female_adult_53_years	chr2	85354337	85354367	85354366	-	High_confidence	2	2	8	0.357241	2.807355	chr2	85354216	85354326	SINE|MIR|MIR1_Amn	-	chr2	85349431	85354506	RETSAT|ENST00000409984.2	-	85349431,85350039,85350779,85354335	85349581,85350241,85351021,85354506	0.625000
vagina_female_adult_53_years	chr2	71378623	71378648	71378634	+	RAMPAGE_only	7	7	21	0.937756	4.221928	chr2	71378470	71379172	LINE|L2|L2a	-	chr2	71373469	71394527	STRG.12029.11	+	71373469,71380512,71386892	71380280,71380565,71394527	0.952381
vagina_female_adult_53_years	chr6	137218778	137218804	137218788	-	High_confidence	2	2	10	0.446551	2.725481	chr6	137218670	137218962	DNA|TcMar-Tigger|Tigger3a	-	chr6	137197496	137219028	IFNGR1|ENST00000647124.1	-	137197496,137200880,137203498,137204331,137206135,137206962,137218983	137198639,137201008,137203685,137204504,137206308,137207077,137219028	0.700000
vagina_female_adult_53_years	chr2	222600050	222600065	222600050	-	RAMPAGE_only	2	2	9	0.401896	2.947703	chr2	222599989	222600062	LINE|RTE-BovB|MamRTE1	-	chr2	222570535	222656069	STRG.18026.2	-	222570535,222599927,222613810,222619644,222623649,222624271,222628836,222630112,222631603,222633198,222634390,222639579,222640861,222642850,222646800,222648739,222656015	222572022,222600083,222613928,222619737,222623730,222624775,222628888,222630174,222631674,222633307,222634541,222639695,222640931,222643005,222647325,222648795,222656069	0.666667
vagina_female_adult_53_years	chr3	48733784	48733805	48733804	+	High_confidence	5	5	18	0.803791	3.947703	chr3	48733472	48735453	Retroposon|SVA|SVA_D	+	chr3	48733821	48734357	STRG.21146.1	+	48733821	48734357	0.944444
vagina_female_adult_53_years	chr2	20285639	20285651	20285639	-	RAMPAGE_only	9	9	25	1.116377	4.001629	chr2	20285632	20286419	LINE|L2|L2a	-	chr2	20249863	20292483	STRG.9764.5	-	20249863,20253821,20254862,20255215,20256032,20258242,20260336,20263192,20278582	20251716,20254014,20254984,20255341,20256170,20258371,20260466,20263460,20292483	0.960000
vagina_female_adult_53_years	chr18	23474780	23474783	23474782	+	RAMPAGE_only	3	5	8	0.357241	2.521641	chr18	23474513	23474894	LINE|L2|L2c	+	chr18	23466168	23481365	RIOK3|ENST00000581339.1	+	23466168,23473428,23474947,23477005,23479316,23481171	23466276,23473483,23475107,23477268,23479424,23481365	0.875000
vagina_female_adult_53_years	chrX	45787053	45787060	45787053	-	High_confidence	3	3	9	0.401896	3.000000	chrX	45786951	45787131	LINE|CR1|L3b	+	chrX	45785838	45787701	STRG.106814.1	-	45785838	45787701	0.888889
vagina_female_adult_53_years	chr2	127084214	127084222	127084214	-	High_confidence	4	5	10	0.446551	3.121928	chr2	127084080	127084233	DNA|hAT-Charlie|MER5A1	+	chr2	127048022	127084550	BIN1|NM_001320642.1	-	127048022,127050420,127050801,127051153,127052254,127053421,127053904,127057472,127059010,127062114,127063570,127063932,127068162,127068923,127069994,127070552,127070761,127076625,127083588	127048633,127050522,127050912,127051243,127052362,127053445,127054012,127057601,127059155,127062197,127063646,127064018,127068255,127069031,127070090,127070647,127070816,127076706,127084550	1.000000
vagina_female_adult_53_years	chr4	152412488	152412529	152412506	-	High_confidence	9	10	48	2.143443	4.926428	chr4	152412471	152412919	LINE|L1|L1ME4c	+	chr4	152411328	152412606	FBXW7|ENST00000605042.1	-	152411328,152412479	152411872,152412606	1.000000
vagina_female_adult_53_years	chr6	30830576	30830641	30830624	-	High_confidence	4	5	32	1.428962	4.800813	chr6	30830591	30830730	LTR|Gypsy|MamGypLTR1b	-	chr6	30812865	30830659	LINC00243|NR_130726.1	-	30812865,30830514	30814772,30830659	0.687500
vagina_female_adult_53_years	chr14	51599923	51600012	51599923	-	High_confidence	34	34	186	8.305842	5.951222	chr14	51599913	51599958	SINE|MIR|MIR3	+	chr14	51546628	51599920	FRMD6-AS2|ENST00000557625.1	-	51546628,51547706,51584165,51599826	51546820,51547883,51584283,51599920	0.844086
vagina_female_adult_53_years	chr15	82377897	82377913	82377908	+	RAMPAGE_only	3	3	9	0.401896	2.750000	chr15	82374068	82380646	LTR|ERV1|HERVIP10B3-int	-	chr15	82391843	82420075	UBE2Q2P2|ENST00000613592.4	+	82391843,82400659,82404611,82407130,82408287,82412661,82419207,82419979	82391953,82400716,82404751,82407305,82408367,82412724,82419247,82420075	0.555556
vagina_female_adult_53_years	chr7	100367467	100367468	100367467	+	RAMPAGE_only	24	26	26	1.161032	4.053509	chr7	100367336	100367673	LTR|ERVL-MaLR|MLT1J2	+	chr7	100358002	100367831	PILRB|NM_178238.3	+	100358002,100358689,100359336,100367348	100358366,100359079,100359537,100367831	0.846154
vagina_female_adult_53_years	chr14	106845858	106845883	106845858	-	RAMPAGE_only	6	7	15	0.669826	3.773557	chr14	106845294	106845981	LTR|ERV1|LTR76	-	chr14	106810441	106811131	IGHV3-74|ENST00000424969.2	-	106810441,106810849	106810746,106811131	0.533333
vagina_female_adult_53_years	chr19	52616962	52616963	52616962	-	RAMPAGE_only	6	6	8	0.357241	3.000000	chr19	52616863	52617165	LINE|L1|L1PA8	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	1.000000
vagina_female_adult_53_years	chr1	176162878	176162953	176162936	-	RAMPAGE_only	8	9	32	1.428962	4.625000	chr1	176162892	176162990	LINE|CR1|L3b	-	chr1	176116645	176206440	COP1|ENST00000491600.5	-	176116645,176135009,176136487,176149005,176162868,176163814,176168664,176175909,176184632,176206348	176116681,176135086,176136547,176149074,176162988,176163891,176168748,176176007,176184692,176206440	0.812500
vagina_female_adult_53_years	chr19	40728982	40728991	40728982	+	RAMPAGE_only	2	2	6	0.267930	2.584963	chr19	40728747	40729066	SINE|Alu|AluSx	+	chr19	40717102	40740860	ITPKC|NM_025194.2	+	40717102,40725339,40729201,40733159,40736985,40737697,40739356	40718290,40725439,40729415,40733364,40737087,40737769,40740860	0.500000
vagina_female_adult_53_years	chr9	125337360	125337369	125337360	+	RAMPAGE_only	3	3	8	0.357241	2.750000	chr9	125337294	125337399	LINE|L2|L2	-	chr9	125302209	125363025	STRG.60839.1	+	125302209,125305062,125307412,125307690,125312451,125321432,125323797,125326415,125330077,125331925,125332509,125337017,125337220,125341176,125342218,125346818,125349389,125350294,125350712,125354653,125355643,125359419,125360527,125362605	125302826,125305149,125307547,125307880,125312612,125321562,125323923,125326589,125330218,125332060,125332629,125337095,125337591,125341264,125342299,125346941,125349519,125350404,125350872,125354841,125355857,125359492,125360725,125363025	1.000000
vagina_female_adult_53_years	chr4	79492539	79492596	79492595	+	High_confidence	7	8	51	2.277408	4.716954	chr4	79491185	79492822	LINE|L1|L1PBa	-	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.941176
vagina_female_adult_53_years	chr2	55268679	55268696	55268695	-	High_confidence	4	4	8	0.357241	2.807355	chr2	55268544	55268728	SINE|MIR|MIR3	-	chr2	55236619	55269179	MTIF2|NM_001005369.1	-	55236619,55237287,55240010,55242939,55243415,55244028,55246336,55249394,55252476,55254040,55254653,55262315,55263639,55266380,55267568,55268577,55268816	55236820,55237428,55240175,55243080,55243668,55244233,55246461,55249534,55252653,55254201,55254825,55262427,55263865,55266518,55267635,55268739,55269179	0.875000
vagina_female_adult_53_years	chr11	58578102	58578133	58578102	-	High_confidence	24	25	61	2.723959	5.202764	chr11	58577885	58578106	LINE|L2|L2b	-	chr11	58526870	58578166	LPXN|ENST00000528954.5	-	58526870,58528042,58549785,58549972,58551064,58554840,58564154,58570555,58578018	58527723,58528191,58549867,58550146,58551232,58554940,58564201,58570713,58578166	0.590164
vagina_female_adult_53_years	chr16	53445773	53445810	53445782	+	High_confidence	11	21	53	2.366718	5.004061	chr16	53445756	53446068	LINE|L2|L2c	-	chr16	53445780	53491648	RBL2|ENST00000379935.8	+	53445780,53447041,53451702,53453451,53453704,53454225,53454655,53459450,53461740,53462551,53464225,53465437,53467057,53469915,53470382,53470745,53479153,53479885,53480566,53481670,53490129	53445929,53447106,53451831,53453612,53453769,53454347,53454842,53459617,53461850,53462655,53464363,53465602,53467169,53470185,53470663,53470922,53479225,53479991,53480769,53481835,53491648	0.830189
vagina_female_adult_53_years	chr7	93114889	93114890	93114889	-	RAMPAGE_only	5	5	7	0.312585	2.521641	chr7	93114834	93115061	LINE|L1|L1MEg2	+	chr7	93102248	93117962	SAMD9|ENST00000446617.1	-	93102248,93117862	93106105,93117962	1.000000
vagina_female_adult_53_years	chr17	35267817	35267955	35267863	+	RAMPAGE_only	10	10	81	3.617060	4.476102	chr17	35267749	35268438	LINE|L1|HAL1b	+	chr17	35243035	35273655	SLFN5|ENST00000299977.8	+	35243035,35258650,35260970,35264182,35265071	35243143,35259702,35261096,35264903,35273655	1.000000
vagina_female_adult_53_years	chr10	103605822	103605849	103605822	-	RAMPAGE_only	5	10	20	0.893101	4.084184	chr10	103605815	103605885	LINE|CR1|L3	+	chr10	103594031	103661787	STRG.64725.4	-	103594031,103605797,103611580,103612852,103617196,103622469,103627088,103660982	103603789,103605917,103611630,103613190,103617314,103622553,103627202,103661787	0.800000
vagina_female_adult_53_years	chr7	121062862	121062867	121062866	+	High_confidence	6	6	13	0.580516	3.392747	chr7	121062672	121063032	LTR|ERVL-MaLR|THE1B	+	chr7	121062764	121261918	CPED1|ENST00000423795.5	+	121062764,121064237,121097698,121099925,121124330,121125819,121127089,121128381,121130124,121133822,121136039,121140826,121141972,121236713,121244201,121261631	121062896,121064313,121097831,121100094,121124473,121125892,121127257,121128486,121130294,121133893,121136090,121141013,121142141,121236831,121244338,121261918	1.000000
vagina_female_adult_53_years	chr15	80059915	80059933	80059918	+	High_confidence	46	60	131	5.849814	5.337463	chr15	80059763	80059958	LINE|L1|L1MDb	+	chr15	80059929	80138393	ZFAND6|NM_001242913.1	+	80059929,80075163,80098415,80120327,80121711,80122699,80131179,80137479	80059963,80075242,80098578,80120498,80121820,80122800,80131293,80138393	0.984733
vagina_female_adult_53_years	chr3	130980299	130980300	130980299	+	High_confidence	4	4	6	0.267930	2.584963	chr3	130980248	130980377	SINE|Alu|FLAM_C	-	chr3	130980569	130996269	ATP2C1|ENST00000510774.1	+	130980569,130992950,130993931,130996042	130980679,130993001,130994098,130996269	0.666667
vagina_female_adult_53_years	chr12	14437981	14437992	14437981	+	RAMPAGE_only	4	4	9	0.401896	2.947703	chr12	14437771	14438064	SINE|Alu|AluYa5	+	chr12	14423760	14498247	ATF7IP|ENST00000540793.5	+	14423760,14434336,14436105,14438129,14446987,14456560,14457206,14460494,14466525,14475889,14478316,14481002,14496230,14497653	14425473,14434423,14436251,14438267,14447053,14456634,14457295,14461133,14466590,14475968,14478472,14481185,14496343,14498247	1.000000
vagina_female_adult_53_years	chr16	9108737	9108787	9108737	+	RAMPAGE_only	11	11	62	2.768614	3.595232	chr16	9108771	9108857	SINE|MIR|MIRb	+	chr16	9104847	9113181	AC087190.3|ENST00000574616.2	+	9104847	9113181	0.935484
vagina_female_adult_53_years	chr3	30623200	30623222	30623202	+	RAMPAGE_only	3	5	9	0.401896	2.503258	chr3	30623084	30623241	SINE|MIR|MIRc	-	chr3	30606600	30694142	TGFBR2|ENST00000359013.4	+	30606600,30623198,30644746,30650269,30671637,30674104,30688383,30691419	30606977,30623273,30644915,30650460,30672437,30674246,30688511,30694142	0.888889
vagina_female_adult_53_years	chr16	20736488	20736654	20736628	-	RAMPAGE_only	65	70	267	11.922902	5.111490	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	0.992509
vagina_female_adult_53_years	chr11	32953924	32953995	32953969	+	RAMPAGE_only	5	6	24	1.071722	4.334963	chr11	32953932	32953995	LINE|CR1|L3	-	chr11	32934583	32975630	QSER1|ENST00000524678.1	+	32934583,32953856,32955295,32955987,32957868,32966299,32969045,32973396,32975247	32935435,32954179,32955412,32956121,32958086,32966437,32969143,32973549,32975630	0.958333
vagina_female_adult_53_years	chr10	93431427	93431504	93431427	-	RAMPAGE_only	14	16	66	2.947234	5.195317	chr10	93431415	93431452	LINE|CR1|L3	-	chr10	93306429	93482194	MYOF|ENST00000358334.9	-	93306429,93310019,93310533,93313019,93316713,93319871,93323077,93323269,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862,93381218,93387796,93389029,93396141,93397246,93397387,93399391,93401417,93402231,93402859,93404022,93404156,93408786,93409572,93426070,93431407,93452049,93456881,93482106	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93323358,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987,93381396,93387913,93389154,93396224,93397290,93397456,93399495,93401544,93402347,93402890,93404073,93404219,93408915,93409739,93426158,93431516,93452141,93456937,93482194	0.984848
vagina_female_adult_53_years	chr9	134373101	134373106	134373102	+	RAMPAGE_only	4	7	14	0.625171	3.521641	chr9	134373053	134373180	SINE|MIR|MIR3	-	chr9	134371970	134440585	RXRA|ENST00000356384.4	+	134371970,134374006,134401395,134401631,134408148,134408939,134417157,134421675,134429107,134431904,134434101,134436466	134372139,134374130,134401540,134401882,134408299,134409119,134417327,134421805,134429240,134431996,134434207,134440585	0.714286
vagina_female_adult_53_years	chr12	121229843	121229858	121229852	-	High_confidence	18	18	34	1.518272	4.452820	chr12	121229593	121230028	LTR|ERVL-MaLR|MLT1C	-	chr12	121229579	121229880	STRG.75715.1	-	121229579	121229880	0.676471
vagina_female_adult_53_years	chr8	143039247	143039267	143039266	+	High_confidence	6	6	13	0.580516	2.855389	chr8	143039024	143039470	LTR|ERV1|LTR75_1	+	chr8	143039261	143054303	C8orf31|ENST00000395172.5	+	143039261,143042957,143043162,143044648,143049208,143053225	143039569,143043087,143043262,143044817,143049298,143054303	0.923077
vagina_female_adult_53_years	chr20	3795750	3795789	3795750	+	High_confidence	18	18	117	5.224643	5.901133	chr20	3795776	3795894	SINE|MIR|MIR	+	chr20	3795738	3806121	CDC25B|NM_021873.3	+	3795738,3797621,3798411,3800287,3800461,3800742,3800970,3801253,3801721,3801923,3802280,3802909,3803107,3803403,3804568,3804820	3796731,3797749,3798463,3800329,3800498,3800865,3801093,3801388,3801802,3802100,3802376,3802972,3803206,3803537,3804680,3806121	1.000000
vagina_female_adult_53_years	chr15	32613829	32613833	32613832	+	High_confidence	4	4	8	0.357241	2.521641	chr15	32613860	32614055	LINE|CR1|L3	+	chr15	32613732	32615111	AC123768.2|ENST00000500941.2	+	32613732,32614108,32614739	32613998,32614202,32615111	0.875000
vagina_female_adult_53_years	chr6	158631135	158631191	158631190	+	RAMPAGE_only	6	6	32	1.428962	4.840224	chr6	158631108	158631267	SINE|MIR|MIRc	-	chr6	158560067	158635424	STRG.44388.1	+	158560067,158573419,158580939,158583953,158585303,158589671,158605266,158607243,158608332,158608658,158623549,158625103,158625702,158628407,158629729,158631322,158631809	158560232,158573523,158580995,158584044,158585425,158589782,158605347,158607343,158608463,158608750,158623607,158625206,158625754,158628490,158629819,158631389,158635424	0.906250
vagina_female_adult_53_years	chr10	32912539	32912556	32912545	-	RAMPAGE_only	11	11	28	1.250342	4.546594	chr10	32912176	32918355	LINE|L1|L1PA5	+	chr10	32900317	32935558	ITGB1|NM_033668.2	-	32900317,32907062,32908367,32910222,32911447,32911885,32919884,32920244,32922256,32922639,32923584,32925870,32928093,32929821,32932514,32935491	32901635,32907143,32908534,32910455,32911670,32912124,32920084,32920385,32922346,32922735,32923740,32926109,32928264,32930044,32932600,32935558	0.571429
vagina_female_adult_53_years	chr11	118205111	118205133	118205111	-	High_confidence	6	6	12	0.535861	2.751629	chr11	118204991	118205257	DNA|hAT-Charlie|Chap1_Mam	-	chr11	118194076	118205390	JAML|ENST00000531530.5	-	118194076,118196734,118197997,118200473,118203427	118194417,118196821,118198091,118200612,118205390	1.000000
vagina_female_adult_53_years	chr2	35067612	35067621	35067612	-	RAMPAGE_only	4	4	8	0.357241	3.000000	chr2	35066782	35072242	LINE|L1|L1PA16	+	chr2	34998272	35000160	AC019064.1|ENST00000414796.2	-	34998272,34998960,34999955	34998504,34999022,35000160	0.500000
vagina_female_adult_53_years	chr19	16086288	16086333	16086288	+	RAMPAGE_only	5	5	12	0.535861	3.022055	chr19	16086198	16086359	SINE|Alu|AluSx1	+	chr19	16081722	16093581	TPM4|ENST00000592138.5	+	16081722,16086422,16088026,16089044,16093535	16082046,16086540,16088097,16089120,16093581	0.500000
vagina_female_adult_53_years	chr3	150572507	150572529	150572528	+	High_confidence	5	5	19	0.848446	4.037401	chr3	150572572	150572872	SINE|Alu|AluSz	+	chr3	150572495	150583903	EIF2A|ENST00000482471.1	+	150572495,150581617,150583199,150583845	150572529,150581746,150583265,150583903	0.842105
vagina_female_adult_53_years	chr7	154928492	154928515	154928503	+	High_confidence	14	14	35	1.562927	4.786426	chr7	154925106	154928743	LTR|ERV1|ERV24B_Prim-int	-	chr7	154928497	154946836	PAXIP1-AS2|ENST00000411526.5	+	154928497,154928955,154944026,154946359,154946639	154928767,154929024,154944620,154946493,154946836	0.914286
vagina_female_adult_53_years	chr20	35713448	35713461	35713448	-	High_confidence	6	6	13	0.580516	3.022055	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.923077
vagina_female_adult_53_years	chr4	55416058	55416069	55416061	+	High_confidence	4	4	11	0.491206	3.095795	chr4	55415845	55416154	SINE|Alu|AluJb	-	chr4	55415270	55425545	TMEM165|ENST00000514904.5	+	55415270,55417071,55417802,55424537,55425375	55416157,55417247,55417985,55424643,55425545	0.545455
vagina_female_adult_53_years	chr2	218287266	218287283	218287279	-	High_confidence	13	13	31	1.384307	4.284684	chr2	218287170	218287238	SINE|MIR|MIR3	-	chr2	218280058	218287291	TMBIM1|ENST00000444000.5	-	218280058,218281939,218285762,218287206	218280126,218282181,218285938,218287291	0.870968
vagina_female_adult_53_years	chr16	21303059	21303062	21303059	-	High_confidence	5	5	13	0.580516	3.334679	chr16	21302894	21303245	LTR|ERVL-MaLR|THE1B	-	chr16	21302662	21303051	STRG.88039.1	-	21302662	21303051	0.615385
vagina_female_adult_53_years	chr1	12409821	12409855	12409854	+	RAMPAGE_only	9	9	18	0.803791	3.852169	chr1	12409812	12410062	LINE|L1|L1ME3A	+	chr1	12385779	12510346	STRG.649.10	+	12385779,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12388056,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	0.777778
vagina_female_adult_53_years	chr20	35732309	35732359	35732358	-	High_confidence	82	82	129	5.760503	4.981482	chr20	35732296	35732562	SINE|Alu|AluSx4	+	chr20	35704327	35732806	RBM39|ENST00000492779.5	-	35704327,35704667,35705224,35707119,35709223,35713018,35714184,35716739,35721739,35724569,35725037,35729311,35729461,35731940	35704581,35704746,35705330,35707201,35709274,35713096,35714389,35716805,35721877,35724722,35725155,35729365,35729527,35732806	0.945736
vagina_female_adult_53_years	chr3	54637752	54637796	54637790	+	High_confidence	17	17	43	1.920168	4.804058	chr3	54636818	54639750	LTR|ERV1|HERVH-int	-	chr3	54637888	54849931	STRG.21590.2	+	54637888,54642127,54752598,54764217,54837158,54838567,54846392,54849485	54638092,54642241,54752677,54764351,54837230,54838648,54846467,54849931	0.558140
vagina_female_adult_53_years	chr2	55228153	55228159	55228158	-	RAMPAGE_only	15	16	24	1.071722	4.088779	chr2	55228053	55228212	LINE|L2|L2c	+	chr2	55222271	55224398	CLHC1|ENST00000403506.1	-	55222271,55224190	55222493,55224398	0.500000
vagina_female_adult_53_years	chr12	27030201	27030247	27030201	+	High_confidence	13	14	47	2.098788	3.839624	chr12	27030124	27030371	SINE|Alu|AluJr	-	chr12	27030259	27030673	MED21|ENST00000621885.1	+	27030259	27030673	0.957447
vagina_female_adult_53_years	chr6	111387849	111387905	111387849	-	RAMPAGE_only	1	1	12	0.535861	3.277613	chr6	111387748	111387800	LINE|L1|X9_LINE	-	chr6	111299030	111482919	REV3L|ENST00000434009.5	-	111299030,111307360,111309852,111311068,111313351,111315266,111322568,111329531,111331675,111333122,111335468,111343924,111349217,111351675,111357013,111358821,111363852,111365264,111367114,111372595,111377700,111379981,111381324,111387764,111388000,111389105,111390085,111392875,111405469,111411479,111416282,111460299,111472012,111482749	111300156,111307570,111310099,111311259,111313489,111315381,111322678,111329738,111331784,111333367,111335610,111344043,111349336,111351791,111357125,111359014,111363978,111365344,111368028,111376757,111377843,111380219,111381444,111387913,111388085,111389210,111390180,111392972,111405630,111411554,111416472,111460406,111472140,111482919	0.833333
vagina_female_adult_53_years	chr22	50757126	50757134	50757126	+	High_confidence	2	2	8	0.357241	2.521641	chr22	50755469	50757323	LINE|L1|L1PA4	-	chr22	50757085	50799637	RPL23AP82|NR_026981.1	+	50757085,50783119,50785172,50798654	50757326,50783294,50785293,50799637	0.625000
vagina_female_adult_53_years	chr10	133369990	133370002	133369990	-	RAMPAGE_only	3	3	14	0.625171	3.180833	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	0.928571
vagina_female_adult_53_years	chr15	89456853	89456884	89456853	-	RAMPAGE_only	9	9	28	1.250342	3.869331	chr15	89456616	89456908	LTR|Gypsy|MamGypLTR1c	+	chr15	89452437	89460822	STRG.86346.1	-	89452437	89460822	1.000000
vagina_female_adult_53_years	chr3	134361872	134361898	134361872	-	RAMPAGE_only	2	2	10	0.446551	3.121928	chr3	134361859	134362029	SINE|MIR|MIR	-	chr3	134356184	134366841	AMOTL2|ENST00000506326.1	-	134356184,134358539,134359282,134360105,134361511,134365816,134366282	134357763,134358719,134359503,134360413,134361807,134365909,134366841	1.000000
vagina_female_adult_53_years	chr16	15740077	15740182	15740077	-	RAMPAGE_only	41	43	233	10.404630	6.449204	chr16	15739747	15740041	SINE|Alu|AluSz6	-	chr16	15703171	15857011	MYH11|ENST00000452625.6	-	15703171,15708802,15714908,15715163,15717139,15718314,15719219,15719584,15720150,15720838,15721421,15724160,15724646,15724887,15726847,15732563,15735365,15737448,15738564,15740050,15741462,15741759,15745128,15747569,15747873,15748046,15750137,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384,15784697,15786629,15798659,15823254,15837907,15856940	15704123,15708841,15715081,15715272,15717348,15718438,15719308,15719713,15720312,15721051,15721634,15724409,15724799,15724992,15727054,15732708,15735578,15737620,15738688,15740188,15741669,15741891,15745237,15747730,15747943,15748168,15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15782477,15784718,15786732,15798687,15823411,15838269,15857011	0.987124
vagina_female_adult_53_years	chr1	1655376	1655422	1655421	-	RAMPAGE_only	8	9	39	1.741548	4.912273	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.717949
vagina_female_adult_53_years	chr7	131428765	131428798	131428788	+	RAMPAGE_only	4	4	17	0.759136	3.500000	chr7	131428688	131428844	DNA|hAT-Charlie|MER5A	+	chr7	131327896	131487962	MKLN1|ENST00000458153.5	+	131327896,131375423,131387119,131388883,131397266,131399237,131411305,131414644,131429032,131437784,131443480,131445773,131463216,131464293,131466275,131470841,131478622,131487606	131327997,131375493,131387262,131388972,131397376,131399433,131411383,131414710,131429145,131437997,131443702,131445903,131463364,131464408,131466415,131470944,131478677,131487962	0.764706
vagina_female_adult_53_years	chrX	47179120	47179159	47179158	+	High_confidence	2	2	8	0.357241	2.750000	chrX	47179096	47179190	LINE|CR1|L3b	-	chrX	47179314	47181543	RBM10|ENST00000478410.1	+	47179314,47179683,47179879,47180211,47180418,47181214,47181506	47179495,47179781,47180037,47180309,47180506,47181401,47181543	1.000000
vagina_female_adult_53_years	chr19	13006125	13006134	13006133	+	RAMPAGE_only	3	3	7	0.312585	2.807355	chr19	13005981	13006192	LINE|L2|L2a	-	chr19	13012187	13025520	NFIX|ENST00000590027.1	+	13012187,13025020	13012266,13025520	1.000000
vagina_female_adult_53_years	chrX	73841940	73841952	73841948	-	High_confidence	5	5	16	0.714481	3.589898	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.687500
vagina_female_adult_53_years	chr14	21020090	21020106	21020090	-	High_confidence	3	3	11	0.491206	2.846439	chr14	21020013	21020322	SINE|Alu|AluSg4	+	chr14	21017994	21020109	NDRG2|ENST00000557416.5	-	21017994,21018203,21018456,21018626,21018762,21019115,21019638,21019919	21018038,21018239,21018504,21018663,21018814,21019160,21019742,21020109	0.727273
vagina_female_adult_53_years	chr4	68188769	68188843	68188842	-	RAMPAGE_only	11	11	40	1.786203	4.834184	chr4	68188808	68189104	SINE|Alu|AluSq	+	chr4	68187648	68191590	STRG.28462.4	-	68187648,68188423	68187722,68191590	0.900000
vagina_female_adult_53_years	chr12	26832778	26832798	26832778	-	High_confidence	5	6	12	0.535861	3.277613	chr12	26832754	26832802	DNA|TcMar-Tigger|Tigger19b	+	chr12	26721286	26832781	ITPR2|ENST00000242737.5	-	26721286,26722396,26724655,26725649,26790156,26832689	26721342,26722555,26724742,26725765,26790227,26832781	0.916667
vagina_female_adult_53_years	chr15	77285006	77285031	77285006	-	RAMPAGE_only	7	9	20	0.893101	4.247928	chr15	77284932	77285097	SINE|Alu|AluSc8	+	chr15	77181746	77255552	PEAK1|ENST00000565820.5	-	77181746,77252366,77255448	77182040,77252526,77255552	0.800000
vagina_female_adult_53_years	chr12	57532056	57532095	57532056	-	RAMPAGE_only	8	9	40	1.786203	4.491220	chr12	57531960	57532134	LINE|RTE-BovB|MamRTE1	+	chr12	57530616	57547120	DCTN2|ENST00000549394.5	-	57530616,57532014,57532212,57532571,57532732,57532983,57533237,57533952,57534291,57535055,57535483,57535748,57538252,57541363,57546027,57547027	57530775,57532106,57532315,57532643,57532810,57533022,57533303,57534097,57534452,57535154,57535545,57535845,57538347,57541372,57546096,57547120	0.750000
vagina_female_adult_53_years	chr14	64087849	64087850	64087849	+	RAMPAGE_only	23	25	25	1.116377	4.229871	chr14	64087899	64088180	SINE|Alu|AluSz	+	chr14	64075614	64226430	SYNE2|ENST00000394768.6	+	64075614,64078465,64080455,64081442,64087418,64087670,64089573,64090865,64093348,64097948,64098746,64101931,64107490,64113340,64119426,64120926,64122011,64122285,64125078,64126326,64126597,64128451,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64165284,64167232,64167494,64168876,64170227,64174943,64177357,64186423,64188549,64190070,64202800,64208757,64209427,64209941,64211960,64212810,64214193,64216247,64218397,64219207,64220436,64221575,64223188,64224460,64224995,64225318	64076100,64078606,64080638,64081580,64087487,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64122427,64125210,64126479,64126807,64128553,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64165410,64167387,64167639,64168971,64170462,64175138,64177483,64186579,64188708,64190237,64202963,64208945,64209578,64210124,64212098,64213005,64214470,64216387,64218512,64219410,64220637,64221704,64223380,64224547,64225045,64226430	0.920000
vagina_female_adult_53_years	chr1	45005798	45005806	45005805	-	High_confidence	5	5	9	0.401896	3.000000	chr1	45004848	45005768	LINE|L2|L2c	-	chr1	45002539	45005588	HECTD3|ENST00000486132.5	-	45002539,45003668,45003854,45004059,45004247,45004599	45003576,45003740,45003936,45004134,45004377,45005588	0.888889
vagina_female_adult_53_years	chr3	69237171	69237186	69237182	-	RAMPAGE_only	9	9	58	2.589994	5.409705	chr3	69237030	69237154	SINE|MIR|MIR3	-	chr3	69169989	69224756	STRG.22412.2	-	69169989,69176523,69180898,69182597,69187769,69189895,69193647,69195021,69195230,69196899,69198697,69216262,69218321,69221857,69224606	69171981,69176656,69181710,69182717,69187917,69189952,69193873,69195141,69196396,69197038,69198774,69216349,69218379,69221923,69224756	0.758621
vagina_female_adult_53_years	chr20	45833293	45833313	45833307	-	High_confidence	12	19	68	3.036544	4.431911	chr20	45833213	45833363	SINE|MIR|MIRc	+	chr20	45823213	45833745	TNNC2|ENST00000372557.1	-	45823213,45823990,45824291,45824494,45824782,45833250,45833657	45823379,45824127,45824406,45824638,45824834,45833328,45833745	1.000000
vagina_female_adult_53_years	chr12	109857925	109857926	109857925	-	RAMPAGE_only	5	5	8	0.357241	3.000000	chr12	109857795	109857955	SINE|MIR|MIRb	-	chr12	109852544	109880325	GLTP|ENST00000540772.1	-	109852544,109855618,109857525,109858682,109880271	109852737,109855738,109857659,109858741,109880325	0.500000
vagina_female_adult_53_years	chr8	102285754	102285758	102285754	-	RAMPAGE_only	7	7	14	0.625171	3.700440	chr8	102285712	102285783	DNA|hAT-Ac|OldhAT1	-	chr8	102271380	102305182	STRG.55017.4	-	102271380,102275520,102275707,102276971,102278825,102279035,102280393,102281288,102285126,102285512,102286359,102287432,102288154,102289452,102293604,102294981,102295203,102295413,102295635,102296892,102297457,102298391,102298847,102299451,102299999,102304042,102305084	102272772,102275619,102275828,102277192,102278939,102279208,102280467,102281519,102285338,102285781,102286617,102287564,102288266,102289576,102294115,102295111,102295330,102295532,102295782,102296984,102297606,102298489,102298971,102299547,102300151,102304169,102305182	0.928571
vagina_female_adult_53_years	chr16	15798662	15798686	15798662	-	RAMPAGE_only	35	36	113	5.046022	5.556721	chr16	15798483	15798628	LINE|L2|L2b	-	chr16	15749167	15783532	MYH11|ENST00000570785.1	-	15749167,15753393,15756340,15757826,15759575,15760539,15763795,15771568,15776077,15778779,15782384	15750331,15753508,15756514,15758000,15759728,15760658,15763891,15771712,15776176,15778843,15783532	0.867257
vagina_female_adult_53_years	chr12	7111492	7111508	7111507	+	RAMPAGE_only	5	5	10	0.446551	3.121928	chr12	7111556	7111739	LINE|L1|L1MEf	+	chr12	7108570	7121027	C1RL-AS1|ENST00000382215.3	+	7108570,7110297,7111024,7112006,7115129,7118898,7119499,7120505	7108947,7110572,7111606,7112064,7115219,7119026,7119553,7121027	0.500000
vagina_female_adult_53_years	chr17	41628695	41628696	41628695	-	RAMPAGE_only	6	6	8	0.357241	2.521641	chr17	41628668	41628794	LINE|L2|L2c	+	chr17	41626535	41634106	KRT42P|ENST00000458343.2	-	41626535,41627886,41628354,41629075,41630418,41633815	41626628,41628106,41628469,41629237,41630630,41634106	0.500000
vagina_female_adult_53_years	chr4	69848525	69848806	69848671	-	RAMPAGE_only	37	40	337	15.048757	4.271320	chr4	69848650	69848745	SINE|tRNA-RTE|MamSINE1	+	chr4	69821291	69860139	STRG.28559.3	-	69821291,69838447,69841430,69844160,69847697,69855300,69857499	69836672,69838572,69842106,69844341,69854314,69855426,69860139	0.982196
vagina_female_adult_53_years	chr5	150118753	150118768	150118767	-	RAMPAGE_only	4	4	12	0.535861	3.459432	chr5	150118592	150118739	SINE|MIR|MIRc	-	chr5	150113841	150125520	STRG.36933.3	-	150113841,150117617,150118746,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444	150115946,150117850,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125520	0.916667
vagina_female_adult_53_years	chr12	30680486	30680493	30680492	-	RAMPAGE_only	5	5	9	0.401896	2.947703	chr12	30680406	30680446	LINE|L2|L2c	-	chr12	30628980	30677244	IPO8|NM_001190995.1	-	30628980,30631894,30634082,30636981,30639514,30649136,30652191,30652966,30656683,30661140,30662326,30663488,30665219,30665728,30666174,30669182,30670961,30673989,30674658,30676497,30676895	30630957,30632011,30634286,30637187,30639735,30649232,30652289,30653092,30656750,30661266,30662487,30663654,30665309,30665845,30666251,30669282,30671096,30674074,30674753,30676587,30677244	1.000000
vagina_female_adult_53_years	chr8	76988308	76988337	76988336	-	RAMPAGE_only	5	5	10	0.446551	2.646439	chr8	76988253	76988288	DNA|hAT-Charlie|MER5A	-	chr8	76983639	76986527	PEX2|ENST00000518986.5	-	76983639,76986186,76986493	76984195,76986296,76986527	0.800000
vagina_female_adult_53_years	chr7	103353917	103353931	103353924	+	High_confidence	2	2	9	0.401896	2.500000	chr7	103353830	103353969	LINE|Penelope|Penelope1_Vert	-	chr7	103353918	103362467	PSMC2|ENST00000460021.1	+	103353918,103354867,103355693,103361956	103353958,103354949,103355793,103362467	0.888889
vagina_female_adult_53_years	chr16	70590319	70590329	70590328	+	RAMPAGE_only	5	5	10	0.446551	2.947703	chr16	70590277	70590397	LINE|CR1|L3	+	chr16	70579908	70654671	IL34|ENST00000563721.2	+	70579908,70646547,70654537	70580049,70646975,70654671	0.800000
vagina_female_adult_53_years	chr1	1655461	1655481	1655461	-	RAMPAGE_only	4	4	18	0.803791	3.734522	chr1	1655403	1655487	LINE|L2|L2	+	chr1	1641771	1658972	CDK11B|ENST00000341028.8	-	1641771,1641905,1642385,1649498,1652438,1655368,1657255,1657374,1658913	1641820,1642001,1642508,1649637,1652566,1655484,1657302,1657498,1658972	0.722222
vagina_female_adult_53_years	chr2	159428326	159428373	159428356	-	RAMPAGE_only	16	23	54	2.411374	5.347480	chr2	159428347	159428380	LINE|CR1|L3	-	chr2	159404371	159435553	BAZ2B|ENST00000472953.1	-	159404371,159405021,159412334,159427940,159428310,159429199,159430862,159432756	159404910,159405114,159412545,159428042,159428419,159429260,159431156,159435553	0.796296
vagina_female_adult_53_years	chr10	27116403	27116410	27116403	-	RAMPAGE_only	2	2	8	0.357241	2.807355	chr10	27116386	27116695	SINE|Alu|AluSp	+	chr10	27111733	27154356	YME1L1|ENST00000375972.7	-	27111733,27112081,27114520,27116059,27116218,27117575,27119293,27120434,27121385,27122840,27123546,27126695,27131858,27134038,27134830,27136275,27142386,27145427,27147497,27148905,27154177	27111887,27112120,27114607,27116133,27116345,27117727,27119449,27120547,27121448,27122973,27123699,27126786,27131941,27134122,27134981,27136385,27142485,27145590,27147668,27149040,27154356	0.750000
vagina_female_adult_53_years	chr2	232816734	232816766	232816734	+	RAMPAGE_only	6	6	28	1.250342	3.997953	chr2	232816641	232816757	LINE|L1|L1MB3	-	chr2	232810310	232858612	GIGYF2|ENST00000474312.5	+	232810310,232812390,232815636,232816870,232819826,232832856,232839848,232844045,232844368,232845731,232847347,232850261,232856792	232811351,232812491,232815737,232817032,232819985,232833093,232839971,232844255,232844574,232845886,232847571,232850409,232858612	0.857143
vagina_female_adult_53_years	chr19	52169761	52169767	52169766	-	High_confidence	6	7	11	0.491206	3.277613	chr19	52169654	52169811	SINE|Alu|AluJb	+	chr19	52165183	52169734	ZNF836|ENST00000602187.1	-	52165183,52168057,52169647	52165385,52168152,52169734	0.818182
vagina_female_adult_53_years	chr8	143558019	143558020	143558019	+	High_confidence	15	15	15	0.669826	3.906891	chr8	143557888	143558141	SINE|Alu|AluSx	-	chr8	143557912	143563062	GSDMD|ENST00000533063.5	+	143557912,143558377,143559331,143559776,143560602,143561001,143561369,143561741,143561958,143562208,143562447,143562661	143558021,143558451,143559552,143559969,143560771,143561104,143561423,143561828,143562131,143562350,143562521,143563062	0.866667
vagina_female_adult_53_years	chr6	30492765	30493165	30493059	+	RAMPAGE_only	13	13	276	12.324798	6.501770	chr6	30493011	30493324	SINE|Alu|AluSc8	+	chr6	30489466	30494205	HLA-E|ENST00000376630.4	+	30489466,30489725,30490239,30491136,30491536,30492403,30492540,30492748	30489595,30489995,30490515,30491412,30491653,30492436,30492583,30494205	1.000000
vagina_female_adult_53_years	chr13	24968471	24968476	24968471	-	High_confidence	4	4	8	0.357241	2.521641	chr13	24968363	24969692	LINE|L1|L1PA15-16	+	chr13	24967241	24968455	TPTE2P1|ENST00000381871.3	-	24967241,24968205	24967453,24968455	0.625000
vagina_female_adult_53_years	chr3	193614856	193614904	193614877	+	High_confidence	3	3	17	0.759136	3.327820	chr3	193614847	193614884	LINE|L2|L2	+	chr3	193614761	193695721	OPA1|ENST00000646699.1	+	193614761,193615673,193617177,193618702,193631611,193635417,193637194,193637951,193643372,193643527,193643974,193645552,193645727,193647064,193648069,193648794,193654861,193657079,193658886,193659481,193662821,193664879,193666295,193667169,193692062,193694605	193615041,193615770,193617285,193618936,193631665,193635522,193637281,193638065,193643444,193643627,193644105,193645625,193645800,193647180,193648134,193648871,193655027,193657232,193658995,193659561,193662962,193664996,193666389,193667280,193692132,193695721	0.882353
vagina_female_adult_53_years	chr15	89333772	89333773	89333772	-	High_confidence	8	8	10	0.446551	2.921928	chr15	89333757	89333941	SINE|MIR|MIRc	+	chr15	89330207	89333809	POLG|ENST00000650303.1	-	89330207,89333095	89330276,89333809	1.000000
vagina_female_adult_53_years	chr7	128984179	128984196	128984179	-	RAMPAGE_only	2	2	6	0.267930	2.584963	chr7	128983986	128984151	LINE|L1|L1M5	-	chr7	128957222	129054883	TNPO3|ENST00000471166.1	-	128957222,128967279,128970147,128972425,128974867,128975818,128978982,128979970,128982247,128984167,128986728,128989960,128991998,128993806,128997388,129000428,129001058,129005015,129014978,129016982,129017956,129054650	128957315,128967392,128970315,128972582,128974962,128975935,128979123,128980031,128982324,128984259,128986920,128990202,128992090,128993914,128997535,129000567,129001234,129005159,129015135,129017056,129018157,129054883	0.666667
vagina_female_adult_53_years	chr15	45131602	45131605	45131604	+	RAMPAGE_only	9	12	17	0.759136	3.528064	chr15	45131641	45131769	LINE|L2|L2a	+	chr15	45130037	45164966	DUOX1|ENST00000561220.6	+	45130037,45131917,45133863,45134144,45135103,45135473,45135781,45136349,45136528,45137923,45139065,45140894,45141291,45141927,45143189,45144035,45144894,45147432,45147903,45148271,45150631,45151122,45151873,45152285,45153379,45153950,45155801,45160836,45161737,45162218,45163531,45163789,45164778	45130098,45132024,45133947,45134309,45135291,45135675,45135948,45136410,45136625,45138014,45139168,45141070,45141410,45142112,45143303,45144235,45145080,45147658,45147997,45148447,45150701,45151248,45152052,45152516,45153479,45154000,45155929,45160990,45161970,45162377,45163687,45163918,45164966	0.588235
vagina_female_adult_53_years	chr4	79493274	79493310	79493299	+	High_confidence	5	8	31	1.384307	4.250752	chr4	79493169	79493671	LTR|ERVL|MLT2A2	+	chr4	79492592	79576458	LINC00989|ENST00000515544.1	+	79492592,79493151,79513784,79575140	79492774,79493585,79513902,79576458	0.870968
vagina_female_adult_53_years	chr18	20969455	20969476	20969475	-	High_confidence	2	2	8	0.357241	2.807355	chr18	20969436	20969622	SINE|MIR|MIRc	+	chr18	20968484	20969354	ROCK1|ENST00000584875.1	-	20968484,20969114	20968860,20969354	0.750000
vagina_female_adult_53_years	chr14	63993964	63993965	63993964	+	RAMPAGE_only	6	6	8	0.357241	2.500000	chr14	63994011	63994107	LTR|ERVL|LTR33A_	+	chr14	63909097	64225564	SYNE2|ENST00000554584.5	+	63909097,63940613,63941694,63941884,63942050,63949824,63954718,63961524,63963898,63967708,63976562,63977904,63978851,63980653,63980985,63982629,63983736,63986455,63990410,63990941,63993834,63995043,63996946,63997300,63998218,63998913,64000561,64001933,64002719,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024256,64024911,64025129,64026578,64027483,64029894,64031015,64034493,64047999,64049610,64051556,64055943,64062750,64065431,64070644,64073967,64075944,64078465,64080455,64081442,64087670,64089573,64090865,64093348,64097948,64098746,64101985,64107490,64113340,64119426,64120926,64122011,64125128,64126326,64126597,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64167232,64167494,64168876,64170227,64173898,64174943,64177357,64188549,64188859,64190070,64190601,64190915,64202186,64202800,64208757,64209427,64209950,64211960,64212810,64214193,64216247,64219207,64220436,64221575,64223188,64224460,64224982,64225318	63909227,63940675,63941790,63941962,63942143,63950006,63954915,63961625,63964000,63967846,63976727,63978017,63979014,63980732,63981173,63982794,63983886,63986617,63990569,63991115,63993969,63995202,63997158,63997391,63998328,63999040,64000719,64002081,64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64022863,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64034592,64048155,64049876,64053657,64056266,64062895,64065650,64070910,64074136,64076100,64078606,64080638,64081580,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64125210,64126479,64126807,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64167387,64167639,64168971,64170321,64174009,64175138,64177483,64188708,64189009,64190237,64190614,64191120,64202265,64202963,64208945,64209578,64210124,64212098,64212954,64214470,64216424,64219410,64220637,64221704,64223380,64224547,64225045,64225564	1.000000
vagina_female_adult_53_years	chr1	14138487	14138488	14138487	+	RAMPAGE_only	4	4	7	0.312585	2.521641	chr1	14138123	14138651	LTR|ERVL-MaLR|MLT1L	-	chr1	13892791	15118043	KAZN|ENST00000636203.1	+	13892791,14180434,14598982,14960683,15034748,15043988,15056090,15060171,15063571,15065629,15094179,15094814,15101542,15103358,15104022,15112426,15114470	13893756,14180592,14599223,14960875,15034885,15044159,15056280,15060302,15063622,15065753,15094385,15094933,15101774,15103460,15104189,15112541,15118043	0.857143
vagina_female_adult_53_years	chr10	121498494	121498522	121498494	-	RAMPAGE_only	2	2	7	0.312585	2.584963	chr10	121498455	121498527	DNA|hAT-Ac|OldhAT1	+	chr10	121478329	121531314	FGFR2|NM_001320654.1	-	121478329,121483697,121485394,121487353,121487990,121496531,121498494,121500825,121503789,121515116,121517318,121519978,121526154,121526728,121527675,121530321,121531266	121480021,121483803,121485532,121487424,121488113,121496722,121498605,121500947,121503941,121515319,121517463,121520169,121526194,121526954,121528003,121530458,121531314	0.571429
vagina_female_adult_53_years	chr9	20658321	20658349	20658346	+	High_confidence	14	15	51	2.277408	4.873310	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658353	20791504	STRG.57398.3	+	20658353,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20791504	0.960784
vagina_female_adult_53_years	chr12	109878996	109878999	109878996	+	RAMPAGE_only	9	9	19	0.848446	3.836592	chr12	109878962	109879076	SINE|MIR|MIRb	-	chr12	109900263	109905027	TCHP|ENST00000537218.1	+	109900263,109903026,109903936,109904736	109900426,109903214,109904147,109905027	0.736842
vagina_female_adult_53_years	chr20	37297362	37297388	37297387	+	High_confidence	3	3	9	0.401896	3.000000	chr20	37297147	37297557	DNA|TcMar-Mariner|MARNA	+	chr20	37297344	37317260	MANBAL|ENST00000397151.1	+	37297344,37298762,37301170,37316307	37297534,37298879,37301413,37317260	0.888889
vagina_female_adult_53_years	chr9	35059881	35059885	35059881	-	High_confidence	6	6	11	0.491206	2.921928	chr9	35059857	35060158	SINE|Alu|AluJr4	+	chr9	35059060	35059892	VCP|ENST00000479300.1	-	35059060,35059492	35059219,35059892	0.727273
vagina_female_adult_53_years	chr13	113187471	113187493	113187471	-	High_confidence	3	3	8	0.357241	2.521641	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.750000
vagina_female_adult_53_years	chr17	82081613	82081659	82081613	-	RAMPAGE_only	4	4	17	0.759136	3.572469	chr17	82081494	82081563	SINE|MIR|MIR1_Amn	-	chr17	82079006	82092155	STRG.94473.4	-	82079006,82079356,82080139,82080369,82080691,82081163,82081600,82082008,82082322,82082526,82082913,82083201,82083516,82083771,82083974,82084233,82084512,82084798,82085034,82085237,82085481,82086253,82087049,82087324,82087684,82087953,82088115,82088389,82088760,82089631,82090374,82090881,82091221	82079280,82079608,82080238,82080590,82080922,82081352,82081843,82082160,82082414,82082678,82083115,82083425,82083639,82083891,82084153,82084384,82084716,82084953,82085156,82085402,82085871,82086558,82087253,82087504,82087861,82088034,82088307,82088562,82089384,82089726,82090564,82091069,82092155	1.000000
vagina_female_adult_53_years	chr19	47750940	47751096	47751095	+	High_confidence	7	7	91	4.063611	5.513641	chr19	47751140	47751189	DNA|hAT-Tip100|MER91A	+	chr19	47750177	47757005	NOP53|ENST00000595143.5	+	47750177,47750907,47751519,47752511,47754526,47754708,47755783,47756527,47756687,47756998	47750286,47751107,47751590,47752607,47754631,47754757,47755822,47756604,47756744,47757005	0.890110
vagina_female_adult_53_years	chr4	75127206	75127228	75127224	-	High_confidence	24	25	88	3.929646	5.690402	chr4	75126805	75132838	LINE|L1|L1PA2	+	chr4	75082011	75127226	STRG.28664.1	-	75082011,75084588,75127065	75082357,75084703,75127226	0.647727
vagina_female_adult_53_years	chr16	20736341	20736347	20736341	-	RAMPAGE_only	2	3	9	0.401896	2.750000	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	0.777778
vagina_female_adult_53_years	chr12	96892473	96892474	96892473	+	RAMPAGE_only	9	9	9	0.401896	2.947703	chr12	96892283	96892630	LTR|ERVL-MaLR|THE1A	+	chr12	96907222	96953777	NEDD1|ENST00000266742.8	+	96907222,96907603,96909751,96912722,96917620,96919984,96934975,96936610,96937197,96940408,96942576,96943559,96944638,96945692,96951431,96951948	96907300,96907856,96909895,96912817,96917737,96920125,96935205,96936812,96937393,96940537,96942624,96943762,96944795,96945849,96951498,96953777	0.666667
vagina_female_adult_53_years	chr15	90467487	90467534	90467533	+	RAMPAGE_only	8	8	40	1.786203	5.003056	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90388260	90500371	IQGAP1|ENST00000560738.1	+	90388260,90390773,90466046,90466268,90467449,90472839,90473714,90473895,90474063,90474484,90476662,90477066,90477664,90481959,90482196,90483360,90484219,90486029,90486953,90487494,90491332,90492544,90494712,90497231,90499994	90388396,90390824,90466091,90466436,90467592,90473010,90473798,90473967,90474133,90474693,90476818,90477230,90477889,90482100,90482281,90483593,90484352,90486132,90487089,90487582,90491545,90492711,90494835,90497340,90500371	0.750000
vagina_female_adult_53_years	chr8	27977120	27977126	27977125	-	RAMPAGE_only	112	127	196	8.752393	6.077423	chr8	27976958	27977297	LTR|ERVL-MaLR|MLT1A0	-	chr8	27904727	27987615	SCARA5|ENST00000518030.1	-	27904727,27907147,27909662,27921570,27987503	27904834,27907246,27909743,27922245,27987615	0.647959
vagina_female_adult_53_years	chr17	50737468	50737469	50737468	+	RAMPAGE_only	4	4	7	0.312585	2.521641	chr17	50737197	50737531	LINE|L1|HAL1	+	chr17	50740266	50744808	LUC7L3|ENST00000507503.1	+	50740266,50741101,50741656,50743705,50744651	50740345,50741246,50741731,50743810,50744808	0.571429
vagina_female_adult_53_years	chr20	3873728	3873845	3873809	+	RAMPAGE_only	5	6	54	2.411374	4.867551	chr20	3873828	3874352	LINE|L1|L1ME3A	+	chr20	3846842	3876110	MAVS|ENST00000428216.3	+	3846842,3854557,3857634,3861331,3862253,3864255,3865682	3846903,3854741,3857809,3861504,3862413,3864788,3876110	0.981481
vagina_female_adult_53_years	chr8	12488591	12488621	12488620	-	High_confidence	11	11	46	2.054133	5.159325	chr8	12485575	12493402	LTR|ERV1|HERVE-int	-	chr8	12487282	12489079	STRG.52552.1	-	12487282,12488484	12487908,12489079	0.500000
vagina_female_adult_53_years	chr5	32403105	32403212	32403108	-	RAMPAGE_only	10	10	76	3.393785	5.582916	chr5	32402806	32403101	LINE|L2|L2c	-	chr5	32354349	32444738	ZFR|NM_016107.3	-	32354349,32363947,32364163,32379114,32380074,32385507,32387548,32388468,32390274,32395158,32397218,32400006,32403105,32403905,32406773,32414968,32417647,32419820,32444228,32444621	32355939,32364045,32364275,32379210,32380172,32385649,32387699,32388674,32390437,32395304,32397338,32400203,32403397,32404097,32407021,32415187,32417792,32420103,32444328,32444738	0.921053
vagina_female_adult_53_years	chr19	3062922	3062978	3062922	-	High_confidence	16	20	67	2.991889	5.234070	chr19	3062911	3063317	LINE|L2|L2a	-	chr19	3052982	3062883	AES|ENST00000586742.5	-	3052982,3055663,3056311,3057678,3061159,3062699	3054194,3055726,3056356,3057742,3061257,3062883	0.955224
vagina_female_adult_53_years	chr16	2759974	2759976	2759974	+	High_confidence	6	10	14	0.625171	3.392747	chr16	2759942	2760060	LINE|L2|L2c	-	chr16	2759932	2760846	SRRM2|ENST00000576076.1	+	2759932	2760846	0.857143
vagina_female_adult_53_years	chrX	53220846	53220847	53220846	-	High_confidence	10	10	12	0.535861	3.459432	chrX	53220710	53220857	SINE|MIR|MIR3	-	chrX	53217852	53221818	KDM5C|ENST00000467093.1	-	53217852,53218275,53220838,53221687	53217966,53218398,53220916,53221818	0.750000
vagina_female_adult_53_years	chr12	15764153	15764160	15764153	-	RAMPAGE_only	2	2	9	0.401896	2.750000	chr12	15763995	15764357	LTR|ERVL-MaLR|THE1B	-	chr12	15670855	15780727	EPS8|ENST00000543363.5	-	15670855,15681225,15682892,15780578	15670923,15681302,15682972,15780727	0.666667
vagina_female_adult_53_years	chr12	46367606	46367624	46367623	-	High_confidence	10	10	16	0.714481	3.773557	chr12	46367602	46367794	SINE|MIR|MIRc	+	chr12	46364441	46367410	SLC38A2|ENST00000548870.5	-	46364441,46364643,46365106,46366863,46367075,46367266	46364556,46364702,46365189,46366945,46367168,46367410	0.625000
vagina_female_adult_53_years	chr18	46087008	46087043	46087042	-	High_confidence	5	5	26	1.161032	4.263465	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.961538
vagina_female_adult_53_years	chr21	13886805	13886818	13886817	-	High_confidence	4	4	8	0.357241	2.807355	chr21	13885278	13886856	LTR|ERVL-MaLR|MSTA-int	-	chr21	13886649	13886995	STRG.102487.1	-	13886649	13886995	0.500000
vagina_female_adult_53_years	chr9	129489058	129489126	129489125	+	High_confidence	15	15	63	2.813269	5.091971	chr9	129489152	129489265	SINE|MIR|MIRc	+	chr9	129489106	129513668	LINC00963|ENST00000423918.5	+	129489106,129493477,129502396,129503322,129513418	129489299,129493595,129503139,129503672,129513668	0.873016
vagina_female_adult_53_years	chr6	43013375	43013393	43013392	-	High_confidence	9	9	28	1.250342	4.593069	chr6	43013388	43013472	LTR|ERVL|LTR50	-	chr6	43011142	43013684	MEA1|ENST00000642555.1	-	43011142,43012925,43013114	43012621,43013028,43013684	1.000000
vagina_female_adult_53_years	chr15	82432280	82432319	82432280	+	RAMPAGE_only	8	8	32	1.428962	4.390320	chr15	82432096	82432293	SINE|MIR|MIRb	+	chr15	82430044	82439153	GOLGA6L9|ENST00000618706.1	+	82430044,82433561,82434033,82434868,82435966,82436278	82432897,82433649,82434602,82434929,82436069,82439153	1.000000
vagina_female_adult_53_years	chr19	16093409	16093463	16093409	+	RAMPAGE_only	26	27	61	2.723959	5.315823	chr19	16093184	16093492	SINE|Alu|AluSx4	-	chr19	16088710	16102946	TPM4|ENST00000591645.2	+	16088710,16089044,16093535,16093683,16101263	16088849,16089120,16093598,16093753,16102946	0.786885
vagina_female_adult_53_years	chr6	35480623	35480624	35480623	-	RAMPAGE_only	9	11	13	0.580516	3.180833	chr6	35480504	35480626	SINE|Alu|FLAM_A	-	chr6	35473596	35497076	TEAD3|ENST00000338863.11	-	35473596,35475335,35475565,35475918,35476301,35477310,35478274,35478433,35479304,35480311,35484559,35486460,35496897	35475157,35475488,35475706,35476092,35476435,35477372,35478324,35478571,35479316,35480374,35484624,35486711,35497076	0.538462
vagina_female_adult_53_years	chr1	166850123	166850178	166850124	+	RAMPAGE_only	36	47	94	4.197576	5.182405	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166847407	166856092	STRG.6154.3	+	166847407,166848937,166849787	166847592,166849733,166856092	0.978723
vagina_female_adult_53_years	chr2	26063890	26063891	26063890	+	RAMPAGE_only	21	23	23	1.027067	4.201841	chr2	26063803	26064055	SINE|Alu|AluSx	-	chr2	26034109	26137454	RAB10|ENST00000264710.4	+	26034109,26098661,26109767,26127143,26127849,26134937	26034735,26098722,26109906,26127233,26127951,26137454	0.521739
vagina_female_adult_53_years	chr17	59619894	59619923	59619894	+	High_confidence	609	685	1983	88.550995	5.626345	chr17	59619922	59620103	LINE|L1|L1MDb	+	chr17	59619923	59647502	CLTC|ENST00000580081.1	+	59619923,59644275,59647397	59620173,59644495,59647502	0.966213
vagina_female_adult_53_years	chr14	24211883	24211895	24211883	-	High_confidence	5	5	12	0.535861	3.459432	chr14	24211871	24212083	SINE|MIR|MIR	-	chr14	24210664	24212109	CHMP4A|ENST00000552620.1	-	24210664,24211410,24211679	24210768,24211592,24212109	0.750000
vagina_female_adult_53_years	chr12	91179462	91179526	91179462	-	High_confidence	3511	3628	15327	684.428189	6.948067	chr12	91179446	91179621	LINE|L2|L2c	+	chr12	91169633	91179439	DCN|ENST00000546370.5	-	91169633,91178341,91179361	91169897,91178585,91179439	0.740132
vagina_female_adult_53_years	chr11	68180167	68180188	68180178	-	High_confidence	2	5	10	0.446551	2.947703	chr11	68180123	68180214	SINE|MIR|MIRc	+	chr11	68171118	68180165	KMT5B|ENST00000323599.10	-	68171118,68171231,68171542,68173803,68174087,68175017,68180131	68171151,68171251,68171709,68173913,68174210,68175183,68180165	0.900000
vagina_female_adult_53_years	chr8	39083039	39083058	39083057	+	RAMPAGE_only	3	3	12	0.535861	3.095795	chr8	39083103	39083786	LINE|L2|L2c	+	chr8	39089784	39103629	ADAM9|ENST00000463437.2	+	39089784,39091258,39101862,39103606	39090188,39091346,39101930,39103629	0.833333
vagina_female_adult_53_years	chrX	151960153	151960154	151960153	-	RAMPAGE_only	7	7	8	0.357241	2.521641	chrX	151960127	151961243	LINE|L2|L2c	-	chrX	151958645	151962593	GABRE|ENST00000476016.1	-	151958645,151959838,151962422	151959149,151959976,151962593	0.875000
vagina_female_adult_53_years	chr22	23705513	23705529	23705513	-	RAMPAGE_only	3	3	10	0.446551	3.121928	chr22	23705210	23705936	LINE|L1|L1MA6	+	chr22	23638486	23717321	GUSBP11|ENST00000451837.5	-	23638486,23640307,23659864,23683724,23690235,23694118,23705428,23709129,23709785,23714186,23715008,23717107	23638942,23640423,23660000,23683867,23690356,23695517,23705541,23709241,23709867,23714342,23715194,23717321	0.800000
vagina_female_adult_53_years	chr10	93361819	93361826	93361825	-	RAMPAGE_only	3	3	8	0.357241	2.521641	chr10	93361783	93361861	DNA|TcMar-Mariner|MADE2	-	chr10	93306428	93379987	MYOF|ENST00000463743.5	-	93306428,93310019,93310533,93313019,93316713,93319871,93323077,93325825,93328762,93329663,93333220,93333757,93335920,93337814,93340152,93341912,93343855,93347616,93349807,93351196,93351412,93351664,93353810,93355627,93356674,93359832,93361451,93363960,93366391,93369644,93372929,93374762,93377322,93379862	93307001,93310167,93310643,93313210,93316813,93320013,93323173,93325965,93328911,93329834,93333312,93333913,93336046,93337913,93340164,93341969,93343932,93347782,93349969,93351295,93351571,93351846,93353888,93355736,93356848,93359978,93361557,93364075,93366555,93369776,93373085,93374955,93377429,93379987	0.750000
vagina_female_adult_53_years	chr6	130049767	130049797	130049767	+	RAMPAGE_only	2	2	8	0.357241	3.000000	chr6	130049727	130050071	LINE|L2|L2-1_AMi	+	chr6	130020556	130141439	L3MBTL3|ENST00000368136.2	+	130020556,130022226,130042684,130049281,130049755,130051248,130052858,130055170,130057405,130060035,130066352,130068329,130070975,130078557,130083619,130086139,130092744,130094264,130104425,130120878,130133451,130133842,130139609	130020668,130022305,130042801,130049393,130049830,130051408,130052991,130055255,130057497,130060140,130066488,130068421,130071127,130078634,130083705,130086250,130092859,130094367,130104575,130120958,130133621,130133905,130141439	0.875000
vagina_female_adult_53_years	chr17	45397328	45397354	45397328	-	RAMPAGE_only	3	3	9	0.401896	2.947703	chr17	45397305	45397691	LINE|CR1|L3b	-	chr17	45394942	45405934	ARHGAP27|ENST00000528384.5	-	45394942,45395743,45395982,45396206,45396486,45396667,45396915,45397948,45402713,45403618,45404028,45404268,45404444,45404923,45405675	45395633,45395849,45396117,45396284,45396585,45396790,45397024,45398047,45402818,45403709,45404096,45404334,45404528,45405106,45405934	0.666667
vagina_female_adult_53_years	chr16	27330079	27330099	27330079	+	RAMPAGE_only	3	3	8	0.357241	2.521641	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27313933	27363903	IL4R|ENST00000568746.5	+	27313933,27340185,27341069,27342120,27344868,27346466,27352539,27355807,27358915,27360765,27362251	27314020,27340273,27341313,27342259,27345020,27346618,27352696,27355907,27358994,27360815,27363903	0.625000
vagina_female_adult_53_years	chr4	142474262	142474273	142474262	-	High_confidence	15	16	29	1.294997	4.116265	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.758621
vagina_female_adult_53_years	chr18	36805376	36805393	36805376	-	RAMPAGE_only	2	4	9	0.401896	2.750000	chr18	36805277	36805349	LINE|L2|L2b	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.888889
vagina_female_adult_53_years	chrX	152920361	152920394	152920368	+	High_confidence	14	14	42	1.875513	5.201841	chrX	152920417	152920551	SINE|MIR|MIR3	+	chrX	152920706	152959841	ZNF185|ENST00000447792.2	+	152920706,152922172,152922719,152931671,152938073,152959698	152920748,152922256,152922809,152931776,152938163,152959841	0.595238
vagina_female_adult_53_years	chr11	3380960	3380961	3380960	+	High_confidence	25	25	26	1.161032	4.213661	chr11	3380764	3381120	LTR|ERVL-MaLR|THE1A	+	chr11	3380960	3408978	TSSC2|ENST00000529482.5	+	3380960,3383461,3384166,3397116,3401758,3402612,3402914,3406498,3408685	3381044,3383546,3384284,3397406,3401867,3402729,3402956,3407697,3408978	0.538462
vagina_female_adult_53_years	chr5	126594180	126594207	126594206	-	High_confidence	5	6	12	0.535861	3.418296	chr5	126594110	126594228	LINE|L2|L2b	-	chr5	126568039	126594318	ALDH7A1|ENST00000511266.6	-	126568039,126570781,126575419,126577078,126582850,126583931,126592663,126593350	126568356,126570859,126575464,126577211,126582974,126584012,126592729,126594318	0.916667
vagina_female_adult_53_years	chr12	53460626	53460654	53460653	+	RAMPAGE_only	2	2	7	0.312585	2.584963	chr12	53460580	53460675	LINE|L2|L2a	+	chr12	53455939	53479850	PCBP2|ENST00000550585.5	+	53455939,53459271,53459799,53462480,53464759,53465931,53467220,53467804,53468776,53471637,53479405	53456001,53459403,53461143,53462567,53464852,53465973,53467293,53467843,53468832,53471807,53479850	0.571429
vagina_female_adult_53_years	chr18	31458790	31458825	31458824	+	RAMPAGE_only	7	7	27	1.205687	4.161978	chr18	31458756	31458899	DNA|hAT-Tip100|MER91A	+	chr18	31453011	31478702	STRG.95504.3	+	31453011,31456992,31458444,31459032,31459844,31460832,31461226,31465317,31466529,31469088,31472283,31472724,31474120,31475645	31456475,31457124,31458600,31459177,31460011,31460961,31464382,31465457,31466754,31469349,31472423,31472788,31474404,31478702	0.592593
vagina_female_adult_53_years	chr1	209429204	209429407	209429209	+	High_confidence	12	13	107	4.778092	5.992114	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209428819	209432545	MIR205HG|ENST00000433108.1	+	209428819,209432203	209431825,209432545	0.925234
vagina_female_adult_53_years	chr5	142875135	142875171	142875160	+	High_confidence	5	6	15	0.669826	3.456565	chr5	142875200	142875313	SINE|MIR|MIR3	+	chr5	142874892	142919443	ARHGAP26|ENST00000475287.2	+	142874892,142879373,142885297,142894237,142901934,142903539,142907703,142913198,142919210	142875171,142879445,142885399,142894348,142902039,142903669,142907804,142913293,142919443	0.800000
vagina_female_adult_53_years	chr8	81289152	81289247	81289246	+	High_confidence	4	4	25	1.116377	3.886842	chr8	81289116	81289489	LINE|L2|L2a	-	chr8	81289318	81290082	STRG.54484.1	+	81289318	81290082	0.880000
vagina_female_adult_53_years	chrX	53546444	53546454	53546444	-	High_confidence	3	3	6	0.267930	2.584963	chrX	53546182	53546411	LINE|L2|L2b	-	chrX	53533003	53546035	STRG.107058.7	-	53533003,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53544559,53545028	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53544762,53546035	0.500000
vagina_female_adult_53_years	chr16	53466713	53466714	53466713	+	High_confidence	32	32	38	1.696892	4.556752	chr16	53466281	53466801	DNA|hAT-Charlie|MER1A	-	chr16	53466773	53470257	RBL2|ENST00000562837.1	+	53466773,53469915	53467169,53470257	1.000000
vagina_female_adult_53_years	chr3	128626809	128626821	128626820	-	RAMPAGE_only	19	19	46	2.054133	4.335429	chr3	128626802	128626852	LINE|CR1|X6B_LINE	+	chr3	128619969	128650849	RPN1|ENST00000296255.7	-	128619969,128622163,128625533,128625873,128626732,128629950,128631947,128637798,128644918,128650539	128620593,128622409,128625653,128626012,128626832,128630143,128632157,128638105,128644983,128650849	0.978261
vagina_female_adult_53_years	chr11	33711384	33711385	33711384	-	RAMPAGE_only	9	9	10	0.446551	2.503258	chr11	33711302	33711405	LINE|L1|L1MB7	+	chr11	33702691	33710283	AL049629.2|ENST00000533181.1	-	33702691,33709905	33702737,33710283	0.900000
vagina_female_adult_53_years	chr1	116390289	116390395	116390289	+	RAMPAGE_only	78	79	427	19.067713	6.377448	chr1	116390243	116390292	LINE|CR1|L3	+	chr1	116383369	116404774	ATP1A1|NM_001160234.1	+	116383369,116384013,116384782,116387287,116388130,116388637,116388901,116389438,116390212,116390781,116392853,116393530,116395109,116396597,116397887,116398620,116398929,116399419,116400860,116401129,116401553,116403883,116404415	116383553,116384124,116384842,116387491,116388244,116388772,116389019,116389707,116390411,116390891,116392988,116393723,116395285,116396734,116398038,116398789,116399084,116399543,116401006,116401260,116401655,116403975,116404774	0.978923
vagina_female_adult_53_years	chrX	5726181	5726278	5726193	-	High_confidence	24	24	50	2.232753	4.916566	chrX	5726136	5726183	LTR|ERVL-MaLR|MLT1C	-	chrX	5723636	5726217	STRG.105876.1	-	5723636,5725929	5723688,5726217	0.740000
vagina_female_adult_53_years	chr17	32684271	32684272	32684271	-	High_confidence	32	33	41	1.830858	4.670018	chr17	32678257	32684272	LINE|L1|L1PA2	-	chr17	32653863	32684284	MYO1D|ENST00000582217.1	-	32653863,32654476,32659114,32684174	32653947,32654621,32659338,32684284	0.682927
vagina_female_adult_53_years	chr15	32514044	32514047	32514044	-	RAMPAGE_only	4	4	9	0.401896	2.750000	chr15	32513894	32514048	DNA|hAT-Charlie|MER20B	-	chr15	32494002	32500346	AC135983.3|ENST00000528049.2	-	32494002,32494928,32498494,32499160,32499671	32494084,32495070,32498666,32499315,32500346	0.666667
vagina_female_adult_53_years	chr2	113133298	113133408	113133390	+	RAMPAGE_only	24	25	219	9.779459	5.294918	chr2	113133292	113133561	DNA|hAT-Charlie|Charlie18a	+	chr2	113127560	113134016	IL1RN|NM_173842.2	+	113127560,113129575,113131044,113132655	113127740,113129664,113131157,113134016	0.995434
vagina_female_adult_53_years	chrX	123611858	123611882	123611881	-	RAMPAGE_only	3	3	12	0.535861	3.095795	chrX	123611621	123612702	LINE|L1|L1MB5	+	chrX	123603448	123613554	THOC2|ENST00000455053.5	-	123603448,123610917,123611439,123613398	123603748,123610957,123611516,123613554	0.583333
vagina_female_adult_53_years	chr19	9700673	9700674	9700673	-	High_confidence	43	50	61	2.723959	3.738893	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9694806	9700672	ZNF812P|ENST00000585964.1	-	9694806,9696093,9700000,9700387	9694867,9696248,9700086,9700672	0.967213
vagina_female_adult_53_years	chr11	57793727	57793814	57793743	+	RAMPAGE_only	6	6	37	1.652237	4.683293	chr11	57793669	57793782	LINE|L2|L2a	-	chr11	57781602	57796584	CTNND1|ENST00000530068.5	+	57781602,57791491,57794009,57795576,57796456	57781646,57791673,57794081,57795729,57796584	0.540541
vagina_female_adult_53_years	chr19	53075363	53075364	53075363	-	High_confidence	10	10	14	0.625171	3.392747	chr19	53075307	53076101	LTR|ERVL|MER21B	+	chr19	53066614	53075967	ZNF160|ENST00000601421.5	-	53066614,53074139,53075056	53070262,53074268,53075967	0.928571
vagina_female_adult_53_years	chr1	39567913	39567926	39567913	-	High_confidence	5	5	14	0.625171	3.392747	chr1	39567903	39567975	DNA|hAT-Charlie|MER5A	+	chr1	39564384	39568856	PABPC4|ENST00000525669.5	-	39564384,39565105,39567750,39568801	39564542,39565378,39567846,39568856	0.714286
vagina_female_adult_53_years	chr4	8436023	8436026	8436023	-	High_confidence	31	35	54	2.411374	5.286790	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8415666	8436037	STRG.27150.10	-	8415666,8416377,8435922	8415999,8416535,8436037	0.500000
vagina_female_adult_53_years	chr2	37147690	37147695	37147690	-	High_confidence	3	3	7	0.312585	2.584963	chr2	37147318	37147662	LINE|L1|L1PA4	-	chr2	37107272	37147806	EIF2AK2|ENST00000405334.5	-	37107272,37107473,37109193,37114730,37119958,37122505,37135483,37136982,37138269,37138508,37139630,37141552,37146852,37147687	37107395,37107527,37109295,37114859,37120139,37122664,37135546,37137017,37138363,37138585,37139757,37141701,37146973,37147806	0.857143
vagina_female_adult_53_years	chr11	57814169	57814212	57814169	+	RAMPAGE_only	2	2	11	0.491206	3.321928	chr11	57814032	57814187	SINE|Alu|AluJr4	+	chr11	57810144	57816011	CTNND1|ENST00000531007.1	+	57810144,57811398,57814310,57815393	57810223,57811486,57814373,57816011	0.545455
vagina_female_adult_53_years	chr21	33909085	33909101	33909085	-	High_confidence	3	3	14	0.625171	3.546594	chr21	33908880	33909038	DNA|hAT-Charlie|MER5A1	-	chr21	33903455	33909095	ATP5PO|ENST00000418933.1	-	33903455,33903934,33907340,33909081	33903656,33904021,33907453,33909095	0.857143
vagina_female_adult_53_years	chr4	8232870	8232871	8232870	+	RAMPAGE_only	6	6	9	0.401896	2.750000	chr4	8232850	8233029	DNA|hAT-Charlie|MER5A	+	chr4	8229150	8241091	SH3TC1|ENST00000502350.5	+	8229150,8231975,8232407,8235432,8236277,8237473,8240697	8229256,8232156,8233513,8235555,8236428,8237670,8241091	0.777778
vagina_female_adult_53_years	chr1	19643225	19643226	19643225	+	High_confidence	6	6	9	0.401896	2.725481	chr1	19643078	19643273	LINE|L2|L2c	-	chr1	19643228	19658456	NBL1|NM_001278164.1	+	19643228,19655011,19655323,19656865	19643378,19655200,19655435,19658456	0.888889
vagina_female_adult_53_years	chr19	48868595	48868617	48868595	-	High_confidence	280	289	1351	60.328994	7.497547	chr19	48868421	48868672	LTR|ERV1|HERVIP10FH-int	-	chr19	48859096	48868610	STRG.99416.1	-	48859096,48859468,48860349,48861400,48861619,48865502,48867536,48868082	48859139,48859684,48860459,48861501,48861692,48865610,48867626,48868610	0.989637
vagina_female_adult_53_years	chr19	15681939	15681957	15681939	+	High_confidence	3	3	9	0.401896	2.947703	chr19	15681898	15682076	SINE|MIR|MIRb	-	chr19	15681500	15697143	CYP4F12|ENST00000546608.1	+	15681500,15683492,15685067,15695935,15696160,15696907	15682514,15684882,15685197,15696069,15696512,15697143	1.000000
vagina_female_adult_53_years	chr10	102509204	102509217	102509216	+	High_confidence	6	7	11	0.491206	2.921928	chr10	102509211	102509300	LINE|CR1|L3	-	chr10	102508978	102633441	STRG.64655.1	+	102508978,102549969,102592581,102593635,102593992,102597139,102599432,102615267,102617289,102627174,102630065	102509303,102550106,102592724,102593721,102594065,102597293,102599544,102615402,102617428,102627243,102633441	0.636364
vagina_female_adult_53_years	chr6	116590898	116590943	116590942	+	RAMPAGE_only	4	4	10	0.446551	3.121928	chr6	116590978	116591112	SINE|Alu|FLAM_C	+	chr6	116571488	116593588	RWDD1|ENST00000487832.6	+	116571488,116574057,116580294,116584726,116588841,116590271,116590887,116592979	116571655,116574171,116580360,116584857,116588985,116590404,116590950,116593588	1.000000
vagina_female_adult_53_years	chr9	19126413	19126437	19126416	-	RAMPAGE_only	5	7	26	1.161032	4.286790	chr9	19126406	19126439	LINE|RTE-BovB|MamRTE1	-	chr9	19108591	19127475	STRG.57294.1	-	19108591,19116358,19118320,19119649,19120879,19123564,19126113,19126396,19127418	19108747,19116649,19118455,19119831,19121165,19123647,19126309,19126448,19127475	0.923077
vagina_female_adult_53_years	chr9	33068838	33068922	33068838	-	RAMPAGE_only	6	10	54	2.411374	4.786790	chr9	33068510	33068804	SINE|Alu|AluJo	-	chr9	33041763	33076659	SMU1|ENST00000397149.3	-	33041763,33048105,33053122,33056112,33056836,33057597,33060464,33062048,33068823,33071739,33073595,33076582	33047391,33048258,33053290,33056239,33056964,33057714,33060584,33062177,33068934,33071892,33073806,33076659	0.944444
vagina_female_adult_53_years	chr9	129698722	129698746	129698737	+	RAMPAGE_only	3	6	18	0.803791	3.614369	chr9	129698735	129698843	SINE|MIR|MIRb	-	chr9	129665640	129722674	PRRX2|ENST00000372469.5	+	129665640,129719230,129720595,129722216	129666126,129719418,129720774,129722674	0.888889
vagina_female_adult_53_years	chr4	5640790	5640835	5640806	-	RAMPAGE_only	6	6	25	1.116377	4.136842	chr4	5640709	5640794	LINE|L2|L2	-	chr4	5562418	5708567	EVC2|NM_147127.4	-	5562418,5565257,5568443,5574684,5576239,5584622,5615421,5618477,5622536,5625748,5628558,5631792,5640513,5663106,5665514,5681259,5685369,5689156,5691264,5694334,5697592,5708285	5563115,5565359,5568640,5574772,5576454,5584850,5615544,5618682,5622991,5625908,5628734,5632032,5640838,5663246,5665649,5681313,5685479,5689343,5691333,5694501,5697647,5708567	0.920000
vagina_female_adult_53_years	chr18	31080471	31080533	31080532	-	RAMPAGE_only	7	8	56	2.500684	5.119153	chr18	31080492	31080869	LTR|ERVL-MaLR|MSTA	+	chr18	31071309	31082537	STRG.95403.6	-	31071309,31074682,31079846,31080095	31071841,31074907,31079989,31082537	0.946429
vagina_female_adult_53_years	chr2	191682506	191682507	191682506	+	RAMPAGE_only	7	8	8	0.357241	2.521641	chr2	191682424	191682628	SINE|tRNA|LFSINE_Vert	-	chr2	191678989	191686177	NABP1|ENST00000435931.1	+	191678989,191681945,191683728,191684229,191685598	191679128,191682017,191683804,191684278,191686177	0.750000
vagina_female_adult_53_years	chr13	51382047	51382086	51382047	-	RAMPAGE_only	3	3	11	0.491206	3.459432	chr13	51381694	51382000	SINE|Alu|AluSq4	-	chr13	51365502	51384691	INTS6|ENST00000483441.5	-	51365502,51367804,51368938,51374207,51374653,51376047,51378238,51379461,51382028,51383328,51383588	51365845,51367898,51369310,51374439,51374796,51376174,51378454,51379572,51382123,51383461,51384691	0.909091
vagina_female_adult_53_years	chr1	219218533	219218566	219218533	+	RAMPAGE_only	2	2	11	0.491206	2.921928	chr1	219218401	219218614	DNA|hAT-Charlie|MER30	+	chr1	219173875	219241910	STRG.7890.1	+	219173875,219179146,219193081,219210531,219211491,219218517,219241198	219173981,219179246,219193251,219210647,219211752,219218712,219241910	0.636364
vagina_female_adult_53_years	chr9	92077156	92077200	92077156	-	RAMPAGE_only	8	15	51	2.277408	5.094102	chr9	92072526	92078223	LTR|ERV1|HERVH-int	+	chr9	92028457	92080076	SPTLC1|ENST00000646481.1	-	92028457,92029179,92034809,92038247,92045998,92046274,92047171,92047612,92049959,92055404,92059178,92067965,92076797,92080015	92028757,92029346,92034883,92038365,92046053,92046334,92047268,92047708,92050067,92055494,92059308,92068098,92077035,92080076	0.745098
vagina_female_adult_53_years	chr3	44439860	44439906	44439860	-	RAMPAGE_only	2	2	18	0.803791	3.499228	chr3	44439688	44440058	LTR|ERVL|LTR52	-	chr3	44431719	44477670	ZNF445|ENST00000396077.7	-	44431719,44449512,44450446,44450867,44451313,44455120,44458243,44477590	44448739,44449623,44450573,44450962,44451482,44455696,44458364,44477670	0.777778
vagina_female_adult_53_years	chr17	19281970	19282007	19281970	+	High_confidence	4	4	21	0.937756	4.106603	chr17	19281937	19282036	LINE|L2|L2a	-	chr17	19281954	19335194	EPN2|ENST00000395620.6	+	19281954,19309884,19312051,19313104,19328710,19329560,19331852,19333955	19283714,19309997,19312144,19313279,19328887,19329647,19332068,19335194	1.000000
vagina_female_adult_53_years	chr19	46927466	46927467	46927466	+	RAMPAGE_only	58	60	65	2.902579	4.433198	chr19	46927388	46927549	LINE|L2|L2b	-	chr19	46918675	47005077	ARHGAP35|ENST00000404338.7	+	46918675,46937263,46987988,46989543,46999303,47000330	46922356,46937408,46988066,46989675,46999409,47005077	0.876923
vagina_female_adult_53_years	chr4	184768320	184768351	184768336	-	RAMPAGE_only	3	3	17	0.759136	3.875000	chr4	184768056	184768306	SINE|MIR|MIRc	-	chr4	184755600	184766702	ACSL1|ENST00000503407.5	-	184755600,184757634,184757818,184760356,184762406,184763166,184764852,184765890,184766621	184757265,184757706,184757920,184760500,184762493,184763255,184764925,184765986,184766702	0.764706
vagina_female_adult_53_years	chr14	64053606	64053651	64053650	+	RAMPAGE_only	11	11	33	1.473617	2.862091	chr14	64053684	64053998	SINE|Alu|AluSz6	+	chr14	63909097	64225564	SYNE2|ENST00000554584.5	+	63909097,63940613,63941694,63941884,63942050,63949824,63954718,63961524,63963898,63967708,63976562,63977904,63978851,63980653,63980985,63982629,63983736,63986455,63990410,63990941,63993834,63995043,63996946,63997300,63998218,63998913,64000561,64001933,64002719,64007042,64009965,64016472,64017594,64019991,64021314,64021856,64022750,64024256,64024911,64025129,64026578,64027483,64029894,64031015,64034493,64047999,64049610,64051556,64055943,64062750,64065431,64070644,64073967,64075944,64078465,64080455,64081442,64087670,64089573,64090865,64093348,64097948,64098746,64101985,64107490,64113340,64119426,64120926,64122011,64125128,64126326,64126597,64129781,64130047,64132264,64134068,64137786,64139940,64141340,64141941,64143771,64146067,64152563,64158624,64159311,64162071,64163401,64167232,64167494,64168876,64170227,64173898,64174943,64177357,64188549,64188859,64190070,64190601,64190915,64202186,64202800,64208757,64209427,64209950,64211960,64212810,64214193,64216247,64219207,64220436,64221575,64223188,64224460,64224982,64225318	63909227,63940675,63941790,63941962,63942143,63950006,63954915,63961625,63964000,63967846,63976727,63978017,63979014,63980732,63981173,63982794,63983886,63986617,63990569,63991115,63993969,63995202,63997158,63997391,63998328,63999040,64000719,64002081,64003330,64007222,64010116,64016631,64017756,64020093,64021515,64022028,64022863,64024459,64025031,64025421,64026730,64027793,64030059,64031357,64034592,64048155,64049876,64053657,64056266,64062895,64065650,64070910,64074136,64076100,64078606,64080638,64081580,64087856,64089696,64091048,64093480,64098146,64098821,64102042,64107607,64113571,64119609,64121061,64122133,64125210,64126479,64126807,64129901,64130248,64132438,64134200,64137983,64140073,64141523,64142088,64143948,64146223,64152716,64158795,64159442,64162276,64163581,64167387,64167639,64168971,64170321,64174009,64175138,64177483,64188708,64189009,64190237,64190614,64191120,64202265,64202963,64208945,64209578,64210124,64212098,64212954,64214470,64216424,64219410,64220637,64221704,64223380,64224547,64225045,64225564	1.000000
vagina_female_adult_53_years	chr2	108451059	108451087	108451086	+	RAMPAGE_only	6	7	10	0.446551	2.646439	chr2	108451073	108451151	LINE|RTE-BovB|MamRTE1	-	chr2	108449883	108472899	GCC2|ENST00000409896.1	+	108449883,108451027,108452398,108468979,108469650,108472826	108449994,108451112,108452466,108469084,108472116,108472899	1.000000
vagina_female_adult_53_years	chr12	10363950	10363965	10363964	+	High_confidence	5	5	11	0.491206	3.277613	chr12	10363811	10364665	LTR|ERV1|HERV15-int	+	chr12	10363768	10398506	AC022075.1|ENST00000500682.1	+	10363768,10374034,10379701,10396178	10364033,10374136,10379836,10398506	0.636364
vagina_female_adult_53_years	chr5	112219334	112219335	112219334	+	RAMPAGE_only	18	18	21	0.937756	4.070656	chr5	112219140	112219503	LTR|ERVL-MaLR|THE1D	+	chr5	112228282	112257309	AC104126.1|ENST00000504004.1	+	112228282,112249597,112250614,112256862	112228352,112249632,112250773,112257309	0.619048
vagina_female_adult_53_years	chr19	20423697	20423704	20423703	-	RAMPAGE_only	12	18	37	1.652237	3.838961	chr19	20423480	20423768	SINE|Alu|AluSg	-	chr19	20398657	20424921	ZNF826P|ENST00000600513.5	-	20398657,20406008,20408949,20424785	20399038,20406132,20409045,20424921	0.810811
vagina_female_adult_53_years	chr15	80115068	80115069	80115068	+	RAMPAGE_only	10	10	12	0.535861	2.751629	chr15	80115037	80115234	SINE|MIR|MIR	+	chr15	80121718	80123067	ZFAND6|ENST00000561017.1	+	80121718,80122699	80121820,80123067	0.583333
vagina_female_adult_53_years	chr1	209527106	209527107	209527106	-	High_confidence	6	6	8	0.357241	2.750000	chr1	209527024	209527251	SINE|MIR|MIRb	-	chr1	209526519	209527949	STRG.7553.1	-	209526519	209527949	0.875000
vagina_female_adult_53_years	chr17	47067498	47067518	47067498	-	High_confidence	62	68	237	10.583251	5.665989	chr17	47065563	47068369	LTR|ERV1|HERVIP10FH-int	-	chr17	47056206	47067488	AC068152.1|ENST00000570379.1	-	47056206,47067413	47056753,47067488	0.957806
vagina_female_adult_53_years	chr11	35204258	35204282	35204268	+	RAMPAGE_only	7	7	28	1.250342	4.593069	chr11	35204251	35204367	SINE|MIR|MIR3	+	chr11	35189834	35204909	CD44|ENST00000534296.5	+	35189834,35201081,35201667,35204511	35190065,35201195,35201787,35204909	0.607143
vagina_female_adult_53_years	chr13	60410080	60410081	60410080	+	RAMPAGE_only	12	12	14	0.625171	3.238901	chr13	60409885	60410240	LTR|ERVL-MaLR|THE1A	+	chr13	60397830	60573864	TDRD3|ENST00000648252.1	+	60397830,60400255,60402717,60439687,60444682,60460379,60467237,60483774,60485798,60494434,60509762,60510629,60528366,60535107,60567524,60573615	60398631,60400292,60402815,60439772,60444748,60460540,60467379,60483846,60485948,60494575,60509919,60510755,60529217,60535233,60567650,60573864	0.928571
vagina_female_adult_53_years	chrX	41341204	41341261	41341204	+	High_confidence	8	8	50	2.232753	4.661468	chrX	41340986	41341284	SINE|Alu|AluSp	-	chrX	41341319	41347782	DDX3X|ENST00000642763.1	+	41341319,41342736,41343215,41343736,41344029,41344238,41345179,41345403,41346228,41346504,41346858,41347314,41347639	41342653,41342836,41343351,41343822,41344128,41344399,41345324,41345548,41346410,41346622,41347012,41347451,41347782	0.980000
vagina_female_adult_53_years	chr14	34536100	34536110	34536100	-	High_confidence	26	26	44	1.964823	4.804058	chr14	34535966	34536061	LINE|L2|L2c	-	chr14	34516489	34536445	EAPP|ENST00000554792.1	-	34516489,34524696,34529357,34533443,34536093	34516586,34524807,34529475,34533539,34536445	0.795455
vagina_female_adult_53_years	chr2	158807067	158807101	158807100	+	RAMPAGE_only	4	4	12	0.535861	3.277613	chr2	158807145	158807223	LINE|CR1|L3b	+	chr2	158795316	158815993	DAPL1|ENST00000309950.7	+	158795316,158804281,158807054,158815704	158795430,158804369,158807115,158815993	0.750000
vagina_female_adult_53_years	chr18	63594061	63594075	63594061	+	RAMPAGE_only	3	3	8	0.357241	3.000000	chr18	63593906	63594140	SINE|MIR|MIR	-	chr18	63587428	63598743	SERPINB13|ENST00000438844.1	+	63587428,63588650,63589655,63592347,63592853,63594025,63594354,63595028,63596958	63587450,63588832,63589712,63592476,63592971,63594238,63594497,63595184,63598743	0.750000
vagina_female_adult_53_years	chr7	134549094	134549135	134549109	+	High_confidence	12	13	50	2.232753	5.109508	chr7	134549070	134551552	LTR|ERV1|HERVS71-int	+	chr7	134549096	134579840	AKR1B15|NM_001080538.2	+	134549096,134556735,134564597,134568157,134569412,134571603,134575419,134575820,134576348,134576962,134577703,134579506	134549249,134556859,134564769,134568325,134569529,134571681,134575542,134575927,134576430,134577046,134577786,134579840	0.520000
vagina_female_adult_53_years	chr17	2975657	2975667	2975666	+	RAMPAGE_only	2	3	9	0.401896	2.750000	chr17	2975524	2975946	LTR|ERVL|LTR79	+	chr17	2980168	3026211	STRG.90402.1	+	2980168,2981194,2984982,2991296,2995336,2998220,3005368,3005954,3008010,3018060,3020476,3026007	2980365,2981248,2985066,2991397,2995466,2998376,3005440,3006041,3008145,3018198,3020595,3026211	0.888889
vagina_female_adult_53_years	chr8	73739992	73740000	73739992	-	RAMPAGE_only	5	6	10	0.446551	2.725481	chr8	73739864	73740312	LTR|ERVL-MaLR|MLT1F2	+	chr8	73653497	73746818	STAU2|ENST00000522962.5	-	73653497,73673106,73688653,73709031,73738283,73739755,73746782	73653896,73673242,73688813,73709162,73738349,73739868,73746818	0.500000
vagina_female_adult_53_years	chr9	98007625	98007628	98007627	+	RAMPAGE_only	6	10	10	0.446551	3.121928	chr9	98007012	98008959	DNA|hAT-Charlie|Charlie3	+	chr9	97983360	98015943	ANP32B|ENST00000339399.4	+	97983360,97994630,97998555,98004963,98011270,98012420,98015363	97983609,97994780,97998678,98005153,98011389,98012472,98015943	0.900000
vagina_female_adult_53_years	chr18	31075010	31075032	31075010	-	RAMPAGE_only	2	2	9	0.401896	3.000000	chr18	31074976	31075060	LINE|L2|L2c	-	chr18	31071309	31082537	STRG.95403.6	-	31071309,31074682,31079846,31080095	31071841,31074907,31079989,31082537	0.666667
vagina_female_adult_53_years	chr4	128428040	128428057	128428040	+	High_confidence	3	3	8	0.357241	2.750000	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.750000
vagina_female_adult_53_years	chr1	207340442	207340476	207340475	+	RAMPAGE_only	4	4	13	0.580516	3.418296	chr1	207340353	207340666	SINE|Alu|AluJr	-	chr1	207321531	207340766	CD55|ENST00000367063.6	+	207321531,207322381,207324558,207325621,207326751,207331107,207336692,207337328,207339396,207340390	207321865,207322567,207324750,207325721,207326837,207331296,207336818,207337409,207339417,207340766	0.615385
vagina_female_adult_53_years	chr1	52914036	52914081	52914036	-	RAMPAGE_only	12	12	58	2.589994	5.203643	chr1	52913984	52914299	LINE|L2|L2b	-	chr1	52913719	52921721	ECHDC2|ENST00000474789.1	-	52913719,52921552	52914095,52921721	0.879310
vagina_female_adult_53_years	chr1	168065415	168065416	168065415	+	RAMPAGE_only	4	4	7	0.312585	2.584963	chr1	168065317	168065446	SINE|Alu|FLAM_C	-	chr1	168042729	168075786	DCAF6|ENST00000489398.1	+	168042729,168044584,168044899,168063620,168065589,168066382,168068357,168075370	168043140,168044671,168045227,168063759,168065746,168066465,168068463,168075786	0.714286
vagina_female_adult_53_years	chr3	48430180	48430185	48430182	-	High_confidence	4	5	9	0.401896	3.000000	chr3	48430133	48430258	SINE|MIR|MIRb	+	chr3	48403853	48430051	PLXNB1|ENST00000296440.10	-	48403853,48405723,48406822,48407026,48409328,48409570,48409904,48410295,48410454,48410867,48411862,48412237,48412441,48412741,48413068,48413669,48413894,48414798,48415175,48415582,48416030,48416345,48417910,48418190,48418448,48418916,48419243,48419576,48420664,48420847,48421227,48421673,48422104,48422330,48422764,48423504,48425280,48430007	48404590,48405798,48406898,48407091,48409476,48409731,48410077,48410380,48410558,48411036,48412009,48412304,48412620,48412959,48413169,48413818,48414071,48415041,48415347,48415759,48416167,48416451,48418062,48418363,48418542,48419039,48419366,48420257,48420773,48420956,48421384,48421806,48422205,48422459,48422947,48424617,48425333,48430051	0.555556
vagina_female_adult_53_years	chr9	20658426	20658427	20658426	+	High_confidence	4	4	6	0.267930	2.584963	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658353	20791504	STRG.57398.3	+	20658353,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20791504	1.000000
vagina_female_adult_53_years	chr8	143020907	143020978	143020977	+	RAMPAGE_only	12	13	53	2.366718	4.906981	chr8	143021012	143021252	LINE|L2|L2b	+	chr8	143018556	143021892	LY6E|ENST00000522024.1	+	143018556,143018832,143020887,143021313,143021565	143018586,143019119,143020991,143021433,143021892	0.962264
vagina_female_adult_53_years	chr9	120471840	120471875	120471840	-	RAMPAGE_only	3	3	7	0.312585	2.521641	chr9	120471770	120471851	LINE|L2|L2	+	chr9	120389198	120491467	STRG.60412.1	-	120389198,120389740,120394511,120400741,120402805,120404035,120407011,120408346,120409126,120411357,120415039,120419787,120422692,120437294,120439398,120443619,120447894,120453455,120458449,120460571,120467859,120470110,120471747,120477349,120487293,120491306	120389292,120389787,120394638,120400885,120403071,120404113,120407248,120408468,120409316,120411474,120415159,120419960,120422741,120437527,120439972,120443742,120448126,120453873,120458622,120460667,120467997,120470217,120471878,120477450,120487437,120491467	1.000000
vagina_female_adult_53_years	chr2	45192665	45192666	45192665	-	High_confidence	12	15	18	0.803791	3.794653	chr2	45192506	45192857	LTR|ERVL-MaLR|THE1B	-	chr2	45187169	45192285	LINC01121|ENST00000454673.1	-	45187169,45192139	45189249,45192285	0.722222
vagina_female_adult_53_years	chr20	34369420	34369458	34369457	+	RAMPAGE_only	6	6	16	0.714481	4.000000	chr20	34369360	34369508	DNA|hAT-Tip100|UCON132b	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.937500
vagina_female_adult_53_years	chr1	222064772	222064773	222064772	-	High_confidence	8	8	8	0.357241	2.750000	chr1	222064600	222064953	LTR|ERVL-MaLR|THE1B	-	chr1	222041704	222064763	LINC01705|ENST00000438158.1	-	222041704,222058413,222064684	222041922,222058678,222064763	0.625000
vagina_female_adult_53_years	chr2	232786857	232786858	232786857	+	RAMPAGE_only	7	8	8	0.357241	2.521641	chr2	232786672	232786916	LINE|L1|L1ME4b	+	chr2	232776751	232791337	GIGYF2|ENST00000427649.5	+	232776751,232787149,232790715,232791007,232791257	232776805,232787329,232790915,232791170,232791337	0.500000
vagina_female_adult_53_years	chr2	61178491	61178508	61178491	+	High_confidence	2	2	7	0.312585	2.807355	chr2	61178267	61178502	SINE|Alu|AluSx3	-	chr2	61178377	61186769	AHSA2P|ENST00000642505.1	+	61178377,61181319,61183546,61184711,61185501,61185979,61186445,61186616	61179171,61181405,61183662,61184800,61185618,61186081,61186497,61186769	1.000000
vagina_female_adult_53_years	chr1	11114331	11114367	11114331	-	High_confidence	4	5	17	0.759136	3.452820	chr1	11114155	11114293	SINE|Alu|AluJr4	-	chr1	11107284	11114629	MTOR|ENST00000473471.5	-	11107284,11108180,11109289,11109648,11112851,11114317	11107500,11108286,11109370,11109729,11112917,11114629	0.941176
vagina_female_adult_53_years	chr19	35164235	35164245	35164244	+	High_confidence	9	12	23	1.027067	4.142915	chr19	35164240	35164365	LINE|L2|L2a	+	chr19	35164034	35169881	FXYD5|ENST00000392217.3	+	35164034,35166141,35166250,35169565	35164245,35166171,35166325,35169881	1.000000
vagina_female_adult_53_years	chr4	1241488	1241501	1241488	-	High_confidence	6	6	16	0.714481	3.452820	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1235752	1241463	CTBP1|ENST00000515690.1	-	1235752,1238182,1241324	1236316,1238337,1241463	0.687500
vagina_female_adult_53_years	chr1	204116596	204116632	204116622	+	High_confidence	3	3	20	0.893101	3.846439	chr1	204116612	204116693	LINE|RTE-BovB|MamRTE1	+	chr1	204116506	204122917	SOX13|ENST00000480326.1	+	204116506,204117121,204117592,204121870,204122236,204122853	204116679,204117190,204117707,204121985,204122399,204122917	0.950000
vagina_female_adult_53_years	chr2	73852487	73852503	73852502	+	High_confidence	7	7	12	0.535861	3.022055	chr2	73852012	73852677	LINE|L2|L2c	-	chr2	73852401	73853964	STRG.12092.1	+	73852401,73853693	73852724,73853964	0.916667
vagina_female_adult_53_years	chr8	133254781	133254835	133254834	-	High_confidence	10	10	29	1.294997	4.593069	chr8	133254749	133254865	LINE|L2|L2b	+	chr8	133246626	133254882	NDRG1|ENST00000521664.1	-	133246626,133247874,133248714,133250439,133254538	133246663,133247926,133248771,133250543,133254882	0.620690
vagina_female_adult_53_years	chr6	3083218	3083281	3083280	+	RAMPAGE_only	7	8	53	2.366718	4.535677	chr6	3083301	3083413	LINE|L2|L2a	+	chr6	3076823	3115187	RIPK1|ENST00000380409.2	+	3076823,3077778,3080978,3083084,3085258,3089580,3104224,3105481,3110802,3113052	3076987,3077935,3081116,3083313,3085408,3089657,3104315,3106051,3110955,3115187	0.962264
vagina_female_adult_53_years	chr3	14063435	14063459	14063435	+	RAMPAGE_only	2	2	6	0.267930	2.584963	chr3	14063376	14063668	SINE|Alu|AluJr4	-	chr3	14019699	14064625	TPRXL|ENST00000532924.5	+	14019699,14028275,14057137,14063378,14064019	14019739,14028384,14057184,14063508,14064625	0.500000
vagina_female_adult_53_years	chr12	2798793	2798822	2798821	+	High_confidence	12	14	23	1.027067	4.277613	chr12	2798828	2798976	SINE|MIR|MIR3	+	chr12	2798766	2800465	FKBP4|ENST00000543037.1	+	2798766,2799849,2800038,2800391	2799244,2799940,2800122,2800465	0.913043
vagina_female_adult_53_years	chr22	50785222	50785229	50785222	+	RAMPAGE_only	4	4	13	0.580516	3.084963	chr22	50785210	50785375	LINE|L2|L2	-	chr22	50783861	50801309	RPL23AP82|ENST00000480246.1	+	50783861,50785172,50798654	50784072,50785293,50801309	0.923077
vagina_female_adult_53_years	chr3	42633304	42633310	42633309	+	High_confidence	5	5	10	0.446551	2.947703	chr3	42633048	42633341	SINE|Alu|AluJr4	-	chr3	42633208	42637000	NKTR|ENST00000460807.2	+	42633208,42634612,42635220,42636867	42633735,42634700,42635366,42637000	0.600000
vagina_female_adult_53_years	chr19	39434419	39434467	39434451	-	High_confidence	4	4	24	1.071722	3.720176	chr19	39434321	39434478	LINE|L2|L2b	+	chr19	39433252	39434390	RPS16|ENST00000595386.1	-	39433252,39433521	39433418,39434390	1.000000
vagina_female_adult_53_years	chr3	135965670	135965749	135965723	+	High_confidence	37	53	373	16.656339	6.354866	chr3	135965699	135965939	LINE|L1|L1MEc	-	chr3	135965672	136147891	PPP2R3A|ENST00000264977.7	+	135965672,136001058,136026831,136040858,136049258,136070477,136078366,136082264,136087882,136090577,136102006,136103257,136106215,136145042	135965849,136003493,136027098,136040962,136049361,136070552,136078453,136082421,136087931,136090667,136102182,136103376,136106322,136147891	0.991957
vagina_female_adult_53_years	chr1	51403432	51403469	51403432	-	RAMPAGE_only	3	3	15	0.669826	3.773557	chr1	51403220	51403397	LINE|L1|L1PB4	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.866667
vagina_female_adult_53_years	chr12	5942727	5942844	5942780	-	RAMPAGE_only	7	7	72	3.215165	4.854021	chr12	5942575	5942790	LINE|L2|L2a	+	chr12	5941762	5944764	STRG.70871.1	-	5941762	5944764	1.000000
vagina_female_adult_53_years	chr12	15001805	15001826	15001805	+	High_confidence	2	2	10	0.446551	3.169925	chr12	15001699	15001916	LINE|L2|L2a	+	chr12	15001832	15006683	LINC01489|ENST00000542689.1	+	15001832,15002934,15005099,15006360	15001906,15003035,15005206,15006683	0.900000
vagina_female_adult_53_years	chr1	162597849	162597853	162597849	+	High_confidence	8	8	13	0.580516	3.238901	chr1	162597899	162598081	LINE|L1|L1MA7	+	chr1	162597240	162599799	UAP1|ENST00000486089.1	+	162597240,162599270	162597858,162599799	0.923077
vagina_female_adult_53_years	chr18	9950122	9950123	9950122	+	RAMPAGE_only	6	6	9	0.401896	3.000000	chr18	9950041	9950258	LINE|L2|L2c	-	chr18	9947593	9951353	VAPA|ENST00000577539.1	+	9947593	9951353	0.777778
vagina_female_adult_53_years	chr15	90467575	90467579	90467578	+	RAMPAGE_only	4	4	10	0.446551	3.121928	chr15	90467536	90467591	DNA|hAT-Charlie|Charlie4z	+	chr15	90473547	90474239	IQGAP1|ENST00000558003.1	+	90473547,90474063	90473967,90474239	0.900000
vagina_female_adult_53_years	chrX	100646400	100646401	100646400	+	High_confidence	4	4	7	0.312585	2.521641	chrX	100646416	100646572	LINE|CR1|L3b	+	chrX	100646322	100666884	SRPX2|ENST00000638458.1	+	100646322,100650784,100662151,100664773,100665242,100665535,100666753	100646404,100650865,100662367,100664950,100665369,100665657,100666884	0.857143
vagina_female_adult_53_years	chr16	20679329	20679351	20679329	+	RAMPAGE_only	2	2	8	0.357241	2.750000	chr16	20678043	20681722	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.875000
vagina_female_adult_53_years	chr11	125090446	125090447	125090446	+	High_confidence	63	63	64	2.857924	5.206973	chr11	125089312	125090854	LTR|ERV1|LTR12C	+	chr11	125090485	125102119	STRG.70148.6	+	125090485,125102104	125090871,125102119	0.937500
vagina_female_adult_53_years	chr1	209567822	209567823	209567822	-	High_confidence	16	16	22	0.982411	3.970573	chr1	209567578	209567919	LTR|ERVL-MaLR|MLT1I	-	chr1	209530835	209567816	STRG.7563.1	-	209530835,209532944,209540697,209541307,209542845,209546056,209566911,209567535,209567718	209532761,209533200,209540788,209541429,209542918,209546139,209566987,209567633,209567816	0.818182
vagina_female_adult_53_years	chr10	104019546	104019555	104019546	+	RAMPAGE_only	2	2	6	0.267930	2.584963	chr10	104019269	104019571	SINE|Alu|AluJr4	-	chr10	103967200	104029233	SLK|ENST00000335753.8	+	103967200,103990674,103992597,103992983,103998898,103999118,103999866,104001443,104002171,104005560,104005911,104008176,104018159,104018783,104019733,104020487,104021619,104025573	103967895,103990839,103992646,103993133,103998971,103999313,103999948,104001572,104003527,104005691,104006035,104008356,104018289,104018908,104019922,104020613,104021733,104029233	1.000000
vagina_female_adult_53_years	chr10	110881097	110881165	110881130	+	High_confidence	6	7	39	1.741548	4.209141	chr10	110881075	110881155	DNA|TcMar-Mariner|MADE2	+	chr10	110880318	110887798	PDCD4|ENST00000492932.5	+	110880318,110881232,110883002,110885252,110887664	110880485,110881535,110883097,110885366,110887798	0.923077
vagina_female_adult_53_years	chr3	54639819	54639857	54639856	-	High_confidence	13	13	57	2.545339	4.951054	chr3	54639752	54640204	LTR|ERV1|LTR7	-	chr3	54632121	54639857	ESRG|ENST00000583516.1	-	54632121,54633558,54634460,54637690	54632807,54633740,54634565,54639857	0.947368
vagina_female_adult_53_years	chr16	18862523	18862548	18862523	-	High_confidence	2	2	11	0.491206	2.921928	chr16	18862430	18862551	LINE|L2|L2	+	chr16	18861708	18862367	STRG.87746.1	-	18861708	18862367	0.818182
vagina_female_adult_53_years	chr14	50159437	50159438	50159437	-	RAMPAGE_only	16	16	18	0.803791	3.947703	chr14	50159217	50159400	DNA|hAT-Tip100|ORSL-2b	-	chr14	50118309	50231309	SOS2|ENST00000543680.5	-	50118309,50120274,50129960,50130500,50134122,50138611,50139941,50145169,50145476,50150007,50153069,50156998,50158564,50159430,50161481,50180571,50182462,50188496,50199690,50200952,50204283,50231196	50118853,50120384,50130002,50130762,50134239,50138784,50140059,50145332,50145596,50150230,50153173,50157121,50158646,50160086,50161609,50180682,50182606,50188700,50199855,50201084,50204409,50231309	1.000000
vagina_female_adult_53_years	chr5	38881649	38881719	38881696	+	RAMPAGE_only	5	5	28	1.250342	4.593069	chr5	38881676	38881753	SINE|tRNA-Deu|AmnSINE2	+	chr5	38846023	38888196	STRG.32650.5	+	38846023,38869031,38876200,38881592,38883826,38885348	38846387,38869117,38876373,38881764,38884111,38888196	0.892857
vagina_female_adult_53_years	chr15	28222648	28222690	28222681	-	RAMPAGE_only	3	3	10	0.446551	2.721928	chr15	28222604	28223110	LTR|ERVL|MER68	+	chr15	28198087	28239842	STRG.82500.2	-	28198087,28201455,28202112,28202346,28206239,28211001,28212444,28213741,28214075,28215620,28218488,28220451,28222027,28228217,28229194,28229459,28230366,28233145,28233433,28233663,28234069,28236962,28238113,28238601	28198769,28201554,28202249,28202614,28206382,28211145,28212583,28213972,28214802,28215802,28218671,28220644,28222215,28228409,28229346,28229847,28230500,28233341,28233561,28233796,28234284,28237113,28238217,28239842	1.000000
vagina_female_adult_53_years	chr17	41871733	41871820	41871819	-	RAMPAGE_only	11	11	47	2.098788	5.043951	chr17	41871724	41871820	LINE|CR1|L3	-	chr17	41867760	41870719	ACLY|ENST00000588779.1	-	41867760,41868708,41869042,41869473,41870354	41867904,41868785,41869125,41869587,41870719	0.872340
vagina_female_adult_53_years	chr3	4856800	4856801	4856800	-	High_confidence	14	15	16	0.714481	3.750000	chr3	4856557	4857001	LTR|ERVL-MaLR|MLT1D	-	chr3	4856312	4856752	STRG.19222.1	-	4856312	4856752	0.750000
vagina_female_adult_53_years	chr9	123179185	123179188	123179187	-	RAMPAGE_only	6	8	12	0.535861	3.095795	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.833333
vagina_female_adult_53_years	chr6	169654674	169654754	169654692	-	RAMPAGE_only	3	3	23	1.027067	4.142915	chr6	169654536	169654718	LTR|ERV1|MER41G	-	chr6	169457453	169659940	STRG.44737.1	-	169457453,169582835,169602218,169632946,169634427,169643696,169647772,169649197,169651929,169658275,169659085,169659450	169457634,169582934,169602321,169633068,169634525,169643786,169647870,169649275,169652008,169658358,169659207,169659940	0.739130
vagina_female_adult_53_years	chr21	41426077	41426133	41426077	+	High_confidence	2	2	25	1.116377	4.023465	chr21	41426026	41426113	DNA|hAT-Charlie|MER5A	-	chr21	41426030	41459214	MX1|NM_002462.4	+	41426030,41427205,41427754,41430532,41432049,41435836,41437014,41439693,41440886,41441715,41443787,41445447,41445999,41449136,41451166,41452620,41458527	41426263,41427304,41427866,41430608,41432175,41436029,41437152,41439848,41441025,41441914,41443866,41445570,41446141,41449295,41451243,41452869,41459214	1.000000
vagina_female_adult_53_years	chr2	185425248	185425283	185425248	+	RAMPAGE_only	2	2	14	0.625171	3.378783	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185433910	185483092	STRG.16395.1	+	185433910,185483033	185434191,185483092	0.500000
vagina_female_adult_53_years	chr11	12989543	12989546	12989543	-	High_confidence	14	22	31	1.384307	4.651084	chr11	12989406	12989730	LTR|ERVL-MaLR|THE1D	-	chr11	12980210	12989539	LINC00958|ENST00000534477.5	-	12980210,12986039,12989455	12980909,12986144,12989539	0.548387
vagina_female_adult_53_years	chr1	19980361	19980363	19980362	-	High_confidence	6	11	11	0.491206	3.095795	chr1	19980243	19980514	LTR|Gypsy|MamGyp-int	-	chr1	19975464	19980407	PLA2G2A|ENST00000491964.5	-	19975464,19978014,19978379,19978733,19979579,19980361	19975843,19978121,19978524,19978879,19979659,19980407	0.818182
vagina_female_adult_53_years	chr10	59578774	59578802	59578801	+	High_confidence	3	3	8	0.357241	2.750000	chr10	59578519	59579195	LINE|L1|L1MDa	-	chr10	59578466	59596363	AC026391.1|ENST00000647375.1	+	59578466,59594951,59596324	59579076,59595051,59596363	0.750000
vagina_female_adult_53_years	chr8	127939656	127939683	127939656	+	RAMPAGE_only	3	3	9	0.401896	2.947703	chr8	127939637	127939772	SINE|MIR|MIRb	-	chr8	127794556	127940454	PVT1|ENST00000521951.1	+	127794556,127890588,127939507	127794734,127890998,127940454	0.777778
vagina_female_adult_53_years	chr21	36005313	36005320	36005319	+	High_confidence	19	20	42	1.875513	4.771928	chr21	36005107	36005443	LTR|ERV1|MER48	+	chr21	36005319	36008295	LINC01436|NR_110419.1	+	36005319,36007318	36005865,36008295	0.785714
vagina_female_adult_53_years	chr14	82642611	82642622	82642621	+	High_confidence	3	4	8	0.357241	2.807355	chr14	82642501	82642782	LTR|ERV1|MER61B	+	chr14	82642631	82706825	LINC02301|ENST00000555150.5	+	82642631,82650923,82685379,82687313,82694789,82706700	82642674,82650996,82685431,82687369,82694868,82706825	0.500000
vagina_female_adult_53_years	chr5	150125450	150125474	150125450	-	High_confidence	9	9	22	0.982411	3.916127	chr5	150125236	150125433	SINE|MIR|MIR3	-	chr5	150113841	150125520	STRG.36933.3	-	150113841,150117617,150118746,150120011,150120887,150121203,150121879,150123041,150124249,150124726,150125444	150115946,150117850,150119566,150120123,150121010,150121322,150122040,150123201,150124360,150124831,150125520	0.818182
vagina_female_adult_53_years	chr17	81845344	81845357	81845347	-	High_confidence	3	3	9	0.401896	2.947703	chr17	81845321	81845418	SINE|Alu|AluJo	+	chr17	81843491	81845456	P4HB|ENST00000473021.1	-	81843491,81845143	81844092,81845456	0.888889
vagina_female_adult_53_years	chrX	74260578	74260708	74260707	-	RAMPAGE_only	27	28	200	8.931013	5.754503	chrX	74260636	74260969	SINE|Alu|AluJb	+	chrX	74219895	74292529	STRG.108186.3	-	74219895,74273574,74280930,74281701,74292426	74273527,74280494,74281085,74281848,74292529	0.960000
vagina_female_adult_53_years	chr11	8138593	8138594	8138593	-	High_confidence	7	7	10	0.446551	2.947703	chr11	8138547	8139126	LTR|ERV1|LTR10C	+	chr11	8110243	8138559	RIC3|ENST00000524799.5	-	8110243,8110658,8126658,8137377,8138271	8110407,8111137,8126804,8137471,8138559	0.900000
vagina_female_adult_53_years	chr11	64807603	64807613	64807612	-	RAMPAGE_only	3	3	7	0.312585	2.584963	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64804374	64806368	MEN1|ENST00000478548.1	-	64804374,64805033,64805634	64804816,64805198,64806368	0.857143
vagina_female_adult_53_years	chr4	109532728	109532731	109532730	+	RAMPAGE_only	8	14	14	0.625171	3.521641	chr4	109532709	109532882	LTR|ERVL|LTR41B	-	chr4	109433814	109540896	SEC24B|ENST00000265175.5	+	109433814,109462900,109473003,109481676,109491326,109494614,109506327,109510008,109511956,109513746,109516527,109520365,109521116,109521419,109524817,109525345,109526225,109527321,109530288,109531384,109532638,109533592,109538492,109539560	109434002,109463644,109473186,109481781,109491407,109494856,109506512,109510111,109512083,109513856,109516640,109520484,109521172,109521626,109524941,109525504,109526399,109527432,109530464,109531522,109532743,109533685,109538596,109540896	0.928571
vagina_female_adult_53_years	chr22	17101890	17101917	17101916	+	RAMPAGE_only	3	3	9	0.401896	3.000000	chr22	17101933	17101968	LINE|Penelope|Penelope1_Vert	+	chr22	17084958	17115694	IL17RA|ENST00000612619.1	+	17084958,17097061,17097796,17098774,17100354,17101995,17102138,17103493,17104725,17105590,17107726,17108306	17085229,17097086,17097943,17098887,17100481,17102043,17102302,17103577,17104810,17105602,17107768,17115694	0.777778
vagina_female_adult_53_years	chr14	50754760	50754773	50754760	-	RAMPAGE_only	4	4	11	0.491206	2.921928	chr14	50754738	50754803	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.909091
vagina_female_adult_53_years	chr4	88595562	88595601	88595600	+	RAMPAGE_only	4	4	15	0.669826	3.521641	chr4	88595552	88595664	SINE|MIR|MIR3	+	chr4	88593377	88653088	HERC3|ENST00000452979.5	+	88593377,88595556,88605794,88649839,88652011,88652868	88593494,88595614,88606049,88649999,88652088,88653088	0.933333
vagina_female_adult_53_years	chr20	44887690	44887729	44887728	+	RAMPAGE_only	5	5	14	0.625171	3.521641	chr20	44887698	44887829	SINE|MIR|MIRc	+	chr20	44885751	44901756	YWHAB|ENST00000445830.1	+	44885751,44886878,44887647,44901530	44885886,44886978,44887742,44901756	0.571429
vagina_female_adult_53_years	chr2	164995116	164995156	164995155	+	RAMPAGE_only	15	20	104	4.644127	5.810735	chr2	164993938	164995321	LTR|ERV1|LTR12C	-	chr2	164992156	165208261	AC019197.1|ENST00000629817.2	+	164992156,164993460,165091119,165130044,165139598,165194895,165208112	164992168,164993640,165091299,165130204,165139709,165195083,165208261	0.740385
vagina_female_adult_53_years	chr11	120120727	120120748	120120727	-	RAMPAGE_only	65	69	109	4.867402	5.504993	chr11	120120712	120120793	DNA|hAT-Tip100|MamTip2	+	chr11	120115363	120123032	STRG.70015.13	-	120115363,120118222,120122953	120115414,120120665,120123032	0.917431
vagina_female_adult_53_years	chr8	133250516	133250623	133250617	-	RAMPAGE_only	53	53	339	15.138067	6.475481	chr8	133250581	133250664	SINE|MIR|MIRb	+	chr8	133246626	133297237	STRG.56259.8	-	133246626,133247874,133248714,133254538,133256776,133258365,133259167,133262046,133264546,133280231,133284248,133297133	133246663,133247926,133250543,133254595,133256863,133258426,133259230,133262167,133264652,133280267,133284329,133297237	0.825959
vagina_female_adult_53_years	chr17	38810332	38810333	38810332	-	High_confidence	20	20	22	0.982411	3.521928	chr17	38810300	38810417	LINE|L2|L2b	+	chr17	38802839	38810595	CWC25|ENST00000619462.4	-	38802839,38806296,38806764,38809701,38810275,38810467	38802861,38806395,38806976,38809765,38810400,38810595	0.590909
vagina_female_adult_53_years	chr4	82285243	82285263	82285260	-	RAMPAGE_only	5	5	19	0.848446	3.683542	chr4	82285193	82285336	LINE|L1|L1MDb	+	chr4	82246608	82283902	STRG.28880.1	-	82246608,82283855	82246933,82283902	0.894737
vagina_female_adult_53_years	chr15	84570184	84570205	84570184	-	High_confidence	3	3	10	0.446551	3.169925	chr15	84570009	84570168	SINE|Alu|AluSq10	-	chr15	84526780	84570700	UBE2Q2P1|ENST00000354771.8	-	84526780,84527618,84534179,84538531,84539703,84542146,84546220,84554960,84561959,84570598	84526876,84527667,84534238,84538616,84539788,84542284,84546277,84555070,84562061,84570700	0.700000
vagina_female_adult_53_years	chr16	81664294	81664320	81664304	+	RAMPAGE_only	3	3	16	0.714481	3.506891	chr16	81664134	81665146	LINE|L1|L1MC3	+	chr16	81645357	81710538	CMIP|ENST00000398040.8	+	81645357,81652202,81657774,81660883,81664268,81670141,81671965,81678274,81691774,81693157,81693438,81696559,81699684,81701659,81702621,81703938,81705498,81707013,81709745	81645598,81652364,81657816,81660946,81664349,81670245,81672070,81678628,81691840,81693184,81693487,81696667,81699801,81701800,81702669,81704085,81705604,81707084,81710538	0.875000
vagina_female_adult_53_years	chr15	92914935	92914974	92914950	+	High_confidence	5	5	17	0.759136	3.852169	chr15	92914710	92915111	LTR|ERV1|LTR54B	-	chr15	92914973	92937588	CHD2|ENST00000629136.1	+	92914973,92924320,92927243,92929029,92937517	92915001,92924552,92927330,92929091,92937588	0.764706
vagina_female_adult_53_years	chr7	134527596	134527785	134527596	+	High_confidence	1004	1024	1545	68.992076	7.455270	chr7	134527583	134527848	SINE|Alu|AluSx1	+	chr7	134527591	134541408	AKR1B10|ENST00000359579.4	+	134527591,134530642,134531907,134533003,134536649,134537050,134537579,134538193,134538934,134541046	134527977,134530810,134532024,134533081,134536772,134537157,134537661,134538277,134539017,134541408	0.992233
vagina_female_adult_53_years	chr5	170267210	170267260	170267210	-	High_confidence	12	13	67	2.991889	5.222202	chr5	170267102	170267803	LINE|L2|L2b	+	chr5	170248299	170267296	LCP2|ENST00000521416.5	-	170248299,170250729,170252433,170253118,170256525,170258036,170258865,170261106,170262634,170262841,170262966,170266807,170267008	170248819,170250885,170252511,170253213,170256575,170258166,170258878,170261137,170262742,170262861,170262992,170266891,170267296	0.985075
vagina_female_adult_53_years	chr7	150323661	150323697	150323696	-	High_confidence	2	2	6	0.267930	2.584963	chr7	150323694	150323836	SINE|MIR|MIR	-	chr7	150247211	150323669	ACTR3C|NM_001164458.1	-	150247211,150248947,150284752,150286366,150289449,150293311,150295251,150323468	150247569,150249054,150284845,150286540,150289593,150293419,150295347,150323669	1.000000
vagina_female_adult_53_years	chr15	92945649	92945680	92945679	+	High_confidence	5	5	13	0.580516	3.085055	chr15	92945380	92945686	SINE|Alu|AluSx1	-	chr15	92945839	92949229	CHD2|ENST00000630016.1	+	92945839,92946037,92948951	92945865,92946340,92949229	1.000000
vagina_female_adult_53_years	chr12	15956719	15956720	15956719	+	High_confidence	7	7	9	0.401896	3.169925	chr12	15956683	15956730	DNA|TcMar-Mariner|MADE1	-	chr12	15956587	16037280	DERA|ENST00000526530.1	+	15956587,15956935,15958187,15959828,15962812,15982307,16032541,16036231,16036689	15956746,15957033,15958335,15959924,15962947,15982436,16032654,16036381,16037280	0.777778
vagina_female_adult_53_years	chr3	54637834	54637864	54637834	+	High_confidence	4	4	17	0.759136	3.077820	chr3	54636818	54639750	LTR|ERV1|HERVH-int	-	chr3	54637888	54849931	STRG.21590.2	+	54637888,54642127,54752598,54764217,54837158,54838567,54846392,54849485	54638092,54642241,54752677,54764351,54837230,54838648,54846467,54849931	0.882353
vagina_female_adult_53_years	chr17	63691827	63691851	63691850	+	RAMPAGE_only	3	3	9	0.401896	2.947703	chr17	63691879	63692027	SINE|MIR|MIRc	+	chr17	63622709	63693874	MAP3K3|ENST00000577395.5	+	63622709,63632680,63646033,63652556,63657793,63666939,63681765,63685516,63688526,63688788,63689543,63690263,63691101,63691732,63692241,63693548	63622763,63632802,63646074,63652656,63657907,63667060,63681899,63685578,63688594,63688881,63689735,63690412,63691233,63691862,63692419,63693874	0.888889
vagina_female_adult_53_years	chr13	106561950	106561951	106561950	-	High_confidence	7	7	8	0.357241	2.807355	chr13	106561731	106562108	LTR|ERVL|LTR75B	-	chr13	106543827	106561951	ARGLU1|ENST00000375926.5	-	106543827,106557047,106557558,106559431,106561831	106544160,106557131,106557616,106559657,106561951	0.625000
vagina_female_adult_53_years	chr10	79446860	79446869	79446868	-	RAMPAGE_only	6	6	12	0.535861	2.845351	chr10	79446834	79446976	SINE|MIR|MIR	+	chr10	79382324	79445627	ZCCHC24|NM_153367.3	-	79382324,79394275,79432557,79445194	79386458,79394440,79432758,79445627	0.916667
vagina_female_adult_53_years	chr19	55056776	55056797	55056796	-	RAMPAGE_only	3	4	7	0.312585	2.584963	chr19	55056791	55057338	LINE|L1|L1MB7	+	chr19	55048656	55059174	RDH13|ENST00000589605.5	-	55048656,55050699,55056652,55059156	55048763,55051002,55056808,55059174	0.714286
vagina_female_adult_53_years	chr20	18794054	18794086	18794077	+	High_confidence	9	9	33	1.473617	4.327820	chr20	18793953	18794451	LTR|ERVL|MLT2F	+	chr20	18794048	18796065	LOC100270804|NR_026885.1	+	18794048	18796065	0.969697
vagina_female_adult_53_years	chr20	35713317	35713353	35713317	-	High_confidence	2	2	11	0.491206	3.277613	chr20	35713317	35713623	SINE|Alu|AluSp	-	chr20	35704404	35713366	RBM39|ENST00000465158.5	-	35704404,35704667,35705224,35707119,35709223,35713018	35704581,35704746,35705330,35707201,35709256,35713366	0.909091
vagina_female_adult_53_years	chr19	52616766	52616767	52616766	-	RAMPAGE_only	9	11	12	0.535861	3.095795	chr19	52616561	52616863	SINE|Alu|AluSp	+	chr19	52612377	52618040	ZNF83|ENST00000541777.6	-	52612377,52616717	52614797,52618040	0.916667
vagina_female_adult_53_years	chr11	100715407	100715408	100715407	+	RAMPAGE_only	7	7	11	0.491206	3.321928	chr11	100715281	100715584	LTR|ERVL|MER70B	+	chr11	100687675	100990925	ARHGAP42|NM_152432.2	+	100687675,100770342,100795104,100859553,100913451,100921493,100933155,100936202,100941783,100943758,100948456,100949916,100959882,100960914,100961683,100962408,100965670,100973174,100974458,100976056,100976814,100978986,100987512,100988712	100687832,100770438,100795166,100859625,100913553,100921604,100933260,100936332,100941884,100943868,100948535,100949956,100959945,100960989,100961768,100962467,100965776,100973334,100974603,100976437,100976971,100979049,100987592,100990925	0.545455
vagina_female_adult_53_years	chr17	15503190	15503191	15503190	-	High_confidence	11	11	14	0.625171	3.546594	chr17	15503120	15503414	SINE|Alu|AluJo	+	chr17	15502263	15503608	STRG.90965.9	-	15502263,15502750	15502726,15503608	0.571429
vagina_female_adult_53_years	chr14	81170364	81170423	81170413	-	High_confidence	4	5	33	1.473617	4.631616	chr14	81169669	81171382	LINE|L1|L1P4a	+	chr14	81049425	81170414	AC007262.2|ENST00000646928.1	-	81049425,81087466,81093581,81094214,81095433,81107032,81165192,81170108	81053816,81087652,81093737,81094324,81095566,81107138,81165381,81170414	0.909091
vagina_female_adult_53_years	chr5	96917819	96917861	96917819	+	RAMPAGE_only	4	5	12	0.535861	3.027169	chr5	96917624	96917934	SINE|Alu|AluY	+	chr5	96896402	96919631	STRG.34818.2	+	96896402,96896731,96900120,96901505,96902273,96903376,96908960,96909579,96912636,96913316,96915687,96917461,96918652	96896504,96896863,96900189,96901681,96902353,96903560,96909117,96909764,96912798,96913457,96915769,96918501,96919631	0.916667
vagina_female_adult_53_years	chr1	21875635	21875640	21875635	-	High_confidence	5	5	16	0.714481	3.625000	chr1	21875470	21875616	SINE|MIR|MIRb	-	chr1	21874477	21875208	HSPG2|ENST00000498495.1	-	21874477,21874615,21874890	21874533,21874729,21875208	0.750000
vagina_female_adult_53_years	chr4	86453184	86453422	86453202	-	High_confidence	146	157	1193	53.273493	5.598499	chr4	86452736	86457879	LINE|L1|L1PB1	+	chr4	86015152	86453203	MAPK10|ENST00000641902.1	-	86015152,86029196,86031367,86064265,86067772,86098523,86101051,86101893,86103185,86107222,86159297,86194335,86354529,86399746,86453029	86017370,86029274,86031431,86064390,86067955,86098595,86101217,86102032,86103244,86107352,86159467,86194407,86354644,86399806,86453203	0.911987
vagina_female_adult_53_years	chr2	159382566	159382569	159382566	-	RAMPAGE_only	16	16	25	1.116377	4.055958	chr2	159382314	159382523	SINE|MIR|MIRb	-	chr2	159318978	159616569	BAZ2B|ENST00000392782.5	-	159318978,159324810,159325652,159332539,159336941,159337566,159347485,159348677,159349006,159349707,159373044,159374690,159382558,159383605,159385154,159386352,159389344,159395768,159397344,159398828,159400598,159404848,159405021,159412334,159428310,159429199,159430862,159432756,159438302,159439008,159446781,159448241,159453612,159478574,159555822,159616241	159320418,159324954,159325918,159332686,159337077,159337772,159347646,159348833,159349280,159350357,159373189,159374753,159382802,159383680,159385369,159386607,159389485,159395834,159397389,159398894,159400664,159404910,159405114,159412545,159428419,159429260,159431156,159433363,159438695,159439212,159446975,159448403,159453801,159478721,159555865,159616569	0.920000
vagina_female_adult_53_years	chr16	10531703	10531735	10531703	-	RAMPAGE_only	2	2	9	0.401896	2.750000	chr16	10531651	10531724	LINE|L2|L2c	+	chr16	10528421	10580698	EMP2|ENST00000359543.7	-	10528421,10537927,10543569,10547539,10580548	10533092,10538074,10543660,10547677,10580698	0.888889
vagina_female_adult_53_years	chr5	119420434	119420465	119420440	+	RAMPAGE_only	38	48	111	4.956712	5.567826	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.756757
vagina_female_adult_53_years	chr2	85376881	85376882	85376881	+	High_confidence	8	8	8	0.357241	3.000000	chr2	85376136	85377036	LINE|L1|L1MDa	-	chr2	85376881	85390995	ELMOD3|ENST00000496957.1	+	85376881,85377343,85389750,85390137,85390759	85376916,85377474,85389827,85390265,85390995	0.500000
vagina_female_adult_53_years	chr6	118651542	118651602	118651592	-	High_confidence	19	19	112	5.001367	5.871694	chr6	118651556	118651749	LINE|L1|L1M4b	-	chr6	118491430	118651857	CEP85L|NM_206921.2	-	118491430,118511297,118523801,118565528,118632452,118651196	118491865,118511415,118523920,118566316,118632611,118651857	1.000000
vagina_female_adult_53_years	chr6	26465348	26465376	26465375	+	RAMPAGE_only	3	3	10	0.446551	3.321928	chr6	26465414	26465549	SINE|Alu|FLAM_C	+	chr6	26457960	26469637	BTN2A1|ENST00000429381.5	+	26457960,26458606,26459480,26463243,26465184,26465952,26466061,26467718	26458142,26458718,26459828,26463525,26465406,26465973,26466088,26469637	1.000000
vagina_female_adult_53_years	chr2	143247332	143247353	143247352	+	High_confidence	4	4	13	0.580516	3.546594	chr2	143246994	143247508	LTR|ERVL|LTR32	+	chr2	143247289	143437042	ARHGAP15|ENST00000469117.5	+	143247289,143250510,143435600,143436912	143247404,143250600,143435699,143437042	0.615385
vagina_female_adult_53_years	chr3	134485414	134485490	134485443	-	High_confidence	14	16	83	3.706370	4.865309	chr3	134485316	134485487	LINE|L2|L2b	+	chr3	134482741	134485703	ANAPC13|ENST00000503439.1	-	134482741,134485319	134482931,134485703	0.734940
vagina_female_adult_53_years	chr4	56657801	56657804	56657801	-	RAMPAGE_only	6	6	11	0.491206	3.121928	chr4	56657736	56657851	SINE|MIR|MIR3	-	chr4	56657247	56675010	STRG.28353.11	-	56657247,56672654	56659538,56675010	0.727273
vagina_female_adult_53_years	chr14	80225171	80225172	80225171	-	RAMPAGE_only	8	8	12	0.535861	3.277613	chr14	80224809	80225246	LTR|ERVL|MLT2A1	-	chr14	80223711	80228521	STRG.81212.1	-	80223711	80228521	0.833333
vagina_female_adult_53_years	chr4	103085384	103085455	103085384	-	High_confidence	5	5	30	1.339652	4.640224	chr4	103085151	103085336	DNA|hAT-Charlie|MER58A	-	chr4	103066458	103085829	SLC9B2|ENST00000508136.1	-	103066458,103067460,103082080,103082870,103085348,103085698	103066507,103067592,103082173,103082929,103085462,103085829	0.700000
vagina_female_adult_53_years	chr6	142905936	142905937	142905936	-	High_confidence	12	12	16	0.714481	3.506891	chr6	142905851	142906142	SINE|Alu|AluSz6	+	chr6	142905055	142905998	STRG.43633.1	-	142905055	142905998	0.875000
vagina_female_adult_53_years	chr9	122164595	122164596	122164595	+	RAMPAGE_only	11	14	17	0.759136	3.577820	chr9	122164272	122164765	LINE|L2|L2c	-	chr9	122166767	122200083	MORN5|ENST00000486801.1	+	122166767,122174495,122199884	122166915,122174627,122200083	0.882353
vagina_female_adult_53_years	chr11	112216074	112216088	112216087	+	High_confidence	4	4	8	0.357241	2.521641	chr11	112215736	112216128	LTR|ERVL-MaLR|MSTB	-	chr11	112216108	112218157	BCO2|ENST00000532673.1	+	112216108,112217760	112216330,112218157	0.750000
vagina_female_adult_53_years	chr2	185425350	185425351	185425350	+	RAMPAGE_only	5	5	7	0.312585	2.807355	chr2	185419434	185425462	LINE|L1|L1PA2	-	chr2	185433910	185483092	STRG.16395.1	+	185433910,185483033	185434191,185483092	0.571429
vagina_female_adult_53_years	chr9	20658597	20658624	20658606	+	High_confidence	8	13	38	1.696892	4.047526	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658353	20791504	STRG.57398.3	+	20658353,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20791504	0.921053
vagina_female_adult_53_years	chr5	141931181	141931192	141931191	+	High_confidence	3	4	8	0.357241	2.750000	chr5	141930908	141931644	LINE|L2|L2a	-	chr5	141931218	141933882	DELE1|ENST00000506775.1	+	141931218,141933258	141931280,141933882	0.750000
vagina_female_adult_53_years	chr6	9811137	9811157	9811137	-	RAMPAGE_only	4	4	8	0.357241	2.750000	chr6	9810750	9816777	LINE|L1|L1PA3	+	chr6	9707761	9939319	OFCC1|ENST00000460363.6	-	9707761,9768930,9775806,9809576,9908517,9932769,9933241,9939288	9707972,9769055,9775889,9809714,9908604,9932946,9933308,9939319	0.500000
vagina_female_adult_53_years	chr11	32854410	32854450	32854423	+	RAMPAGE_only	11	11	50	2.232753	3.501608	chr11	32854273	32854578	SINE|Alu|AluSx1	+	chr11	32829942	32858123	PRRG4|ENST00000257836.3	+	32829942,32830507,32836657,32838881,32840106,32853295	32830173,32830632,32836821,32838930,32840239,32858123	1.000000
vagina_female_adult_53_years	chr15	71546887	71546888	71546887	+	High_confidence	14	17	18	0.803791	3.725481	chr15	71546806	71547005	SINE|MIR|MIR3	-	chr15	71547201	71783383	THSD4|NM_001286429.1	+	71547201,71660529,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71771063,71777231	71547481,71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71771208,71783383	0.666667
vagina_female_adult_53_years	chrX	107156196	107156232	107156196	-	RAMPAGE_only	2	2	8	0.357241	3.000000	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.500000
vagina_female_adult_53_years	chr6	28909170	28909190	28909170	-	RAMPAGE_only	5	5	11	0.491206	2.663533	chr6	28909112	28909406	SINE|Alu|AluSp	-	chr6	28903001	28923913	TRIM27|ENST00000481474.5	-	28903001,28908972,28911695,28920011,28921891,28923212	28908840,28909088,28911718,28920242,28921987,28923913	0.727273
vagina_female_adult_53_years	chr17	47679912	47679965	47679964	+	High_confidence	9	10	44	1.964823	4.775102	chr17	47679684	47679996	SINE|Alu|AluY	-	chr17	47679879	47682589	KPNB1|ENST00000580158.1	+	47679879,47680507,47682403	47680134,47680669,47682589	0.795455
vagina_female_adult_53_years	chr12	12635933	12635951	12635948	+	RAMPAGE_only	2	2	8	0.357241	2.521641	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	0.875000
vagina_female_adult_53_years	chr3	52615409	52615447	52615446	-	High_confidence	5	6	19	0.848446	3.836592	chr3	52615318	52615418	DNA|TcMar-Tigger|Tigger19b	-	chr3	52609085	52615399	PBRM1|ENST00000480064.1	-	52609085,52615350	52609955,52615399	0.789474
vagina_female_adult_53_years	chr9	2073156	2073162	2073156	+	High_confidence	3	3	8	0.357241	3.000000	chr9	2072786	2073156	LTR|ERVL-MaLR|MLT1N2	-	chr9	2073096	2081860	SMARCA2|ENST00000635129.1	+	2073096,2073565,2076228,2077628,2081831	2073342,2073623,2076329,2077776,2081860	1.000000
vagina_female_adult_53_years	chr15	65642892	65642923	65642911	+	High_confidence	2	3	10	0.446551	2.725481	chr15	65642926	65642974	SINE|MIR|MIR3	+	chr15	65642904	65654191	SLC24A1|ENST00000449142.2	+	65642904,65644426,65645611,65650381,65651669,65652641,65653829	65643006,65644513,65645703,65650942,65651759,65652808,65654191	0.900000
vagina_female_adult_53_years	chr11	96386256	96386275	96386274	-	RAMPAGE_only	2	2	7	0.312585	2.584963	chr11	96386034	96386353	DNA|TcMar-Mariner|MARNA	+	chr11	96353645	96384990	CCDC82|ENST00000423339.2	-	96353645,96358992,96364979,96371012,96373374,96383268,96383961	96353714,96359178,96365150,96371137,96373467,96383473,96384990	0.714286
vagina_female_adult_53_years	chr4	102431228	102431248	102431244	-	High_confidence	4	4	12	0.535861	3.095795	chr4	102431062	102431374	SINE|Alu|AluY	+	chr4	102418601	102431249	AC098487.1|ENST00000502883.5	-	102418601,102419696,102431061	102418988,102419794,102431249	0.916667
vagina_female_adult_53_years	chr15	34232426	34232445	34232444	-	RAMPAGE_only	5	5	13	0.580516	3.546594	chr15	34232239	34232527	SINE|Alu|AluSz	-	chr15	34229995	34318779	SLC12A6|ENST00000290209.9	-	34229995,34235180,34236014,34236707,34237418,34238231,34238964,34240660,34241232,34242101,34243973,34245284,34245692,34250297,34250630,34250898,34252169,34254347,34255261,34256228,34257641,34258812,34260925,34275344,34318560	34233972,34235314,34236199,34236815,34237550,34238401,34239160,34240829,34241337,34242221,34244072,34245403,34245867,34250355,34250729,34251057,34252384,34254589,34255392,34256283,34257788,34258944,34261020,34275389,34318779	1.000000
vagina_female_adult_53_years	chr3	55505262	55505263	55505262	-	High_confidence	12	16	16	0.714481	3.750000	chr3	55505081	55505454	LTR|ERVL-MaLR|THE1D	-	chr3	55493829	55505261	AC121764.1|ENST00000472238.1	-	55493829,55497388,55501598,55505197	55494055,55497477,55501782,55505261	0.500000
vagina_female_adult_53_years	chr6	127330869	127330929	127330917	-	High_confidence	4	4	29	1.294997	4.310443	chr6	127330779	127330893	LINE|CR1|L3	-	chr6	127290049	127330949	ECHDC1|ENST00000436638.5	-	127290049,127314815,127315933,127316449,127326495,127327001,127330808	127290277,127314896,127315974,127316502,127326574,127327144,127330949	0.896552
vagina_female_adult_53_years	chr4	73144770	73144797	73144770	-	RAMPAGE_only	5	6	21	0.937756	4.070656	chr4	73144743	73144791	DNA|hAT-Ac|OldhAT1	+	chr4	73075992	73148712	STRG.28638.5	-	73075992,73076939,73077354,73078641,73085248,73090666,73094078,73097116,73098072,73102375,73113791,73115820,73118687,73120161,73120880,73121616,73124912,73125200,73135116,73139530,73141740,73142241,73142639,73144744,73146763	73076290,73077104,73077533,73078890,73085446,73092300,73094228,73097272,73098520,73102547,73113908,73115916,73118850,73120337,73121094,73121759,73125058,73125312,73135265,73140283,73141843,73142385,73142767,73144832,73148712	0.904762
vagina_female_adult_53_years	chr2	174410347	174410372	174410371	+	High_confidence	5	6	17	0.759136	3.969816	chr2	174404458	174410482	LINE|L1|L1PA2	-	chr2	174410343	174428035	SCRN3|ENST00000475928.1	+	174410343,174424474,174427712	174410503,174424649,174428035	0.647059
vagina_female_adult_53_years	chr9	114394398	114394413	114394398	-	High_confidence	3	3	8	0.357241	2.807355	chr9	114394376	114394483	SINE|MIR|MIR3	+	chr9	114334155	114394405	AKNA|ENST00000307564.8	-	114334155,114341532,114342008,114343707,114345862,114346668,114347723,114350858,114355924,114356862,114357920,114359593,114359895,114361703,114362405,114364559,114367542,114368438,114374092,114376465,114381059,114394356	114337306,114341725,114342125,114343803,114346009,114346784,114347900,114351021,114356136,114356969,114358167,114359794,114360062,114361911,114362533,114364619,114367697,114368595,114374167,114377532,114381446,114394405	0.875000
vagina_female_adult_53_years	chr22	31701664	31701666	31701664	-	RAMPAGE_only	5	7	11	0.491206	3.027169	chr22	31701486	31701624	LINE|L1|L1M5	-	chr22	31681349	31703718	PRR14L|ENST00000432485.1	-	31681349,31683628,31688155,31701655,31703549	31682134,31685803,31688227,31701762,31703718	0.909091
vagina_female_adult_53_years	chr10	73536364	73536384	73536383	-	RAMPAGE_only	8	9	18	0.803791	3.852169	chr10	73536351	73536426	LINE|L1|L1PBa	+	chr10	73497537	73541702	USP54|ENST00000424265.5	-	73497537,73500654,73505307,73516374,73520907,73523582,73526646,73529679,73530142,73530703,73534599,73536268,73539443,73541374,73541632	73499188,73500838,73505426,73517747,73521027,73523750,73526780,73529911,73530523,73530835,73534770,73536437,73539593,73541521,73541702	0.888889
vagina_female_adult_53_years	chr3	189309857	189309867	189309857	+	High_confidence	3	4	7	0.312585	2.807355	chr3	189309787	189309871	LINE|RTE-BovB|MamRTE1	+	chr3	189309893	189315595	TPRG1|ENST00000481307.1	+	189309893,189310385,189315492	189310177,189310539,189315595	0.571429
vagina_female_adult_53_years	chr10	79435757	79435786	79435757	-	RAMPAGE_only	2	2	9	0.401896	2.947703	chr10	79435626	79435755	SINE|MIR|MIR3	-	chr10	79386036	79444219	ZCCHC24|ENST00000372333.3	-	79386036,79394275,79432557,79444101	79386458,79394440,79432758,79444219	0.888889
vagina_female_adult_53_years	chr14	103848782	103848814	103848813	-	RAMPAGE_only	8	8	22	0.982411	4.368523	chr14	103848808	103849048	SINE|MIR|MIRb	+	chr14	103733750	103847590	PPP1R13B|NM_015316.2	-	103733750,103736002,103737693,103738678,103738885,103739823,103741789,103742653,103746372,103749793,103752999,103754069,103757649,103778744,103784794,103797370,103847298	103735195,103736202,103737860,103738812,103739023,103740593,103742291,103742823,103746553,103749934,103753196,103754244,103757751,103778821,103784914,103797518,103847590	0.500000
vagina_female_adult_53_years	chr18	244457	244458	244457	-	RAMPAGE_only	6	6	8	0.357241	2.807355	chr18	243923	245900	LINE|L1|L1MEi	-	chr18	214520	245734	THOC1|ENST00000583228.5	-	214520,215428,216485,218885,223439,224083,224923,225088,226800,244301	214921,215504,216633,218969,223505,224179,224994,225403,226901,245734	0.500000
vagina_female_adult_53_years	chr1	153188328	153188329	153188328	-	High_confidence	12	13	16	0.714481	3.506891	chr1	153183386	153189111	LINE|L1|L1PA8	-	chr1	153187351	153188137	STRG.5625.1	-	153187351	153188137	0.625000
vagina_female_adult_53_years	chr14	50756789	50756808	50756789	-	RAMPAGE_only	9	9	16	0.714481	3.323231	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.937500
vagina_female_adult_53_years	chr7	80369531	80369569	80369534	+	High_confidence	18	18	54	2.411374	4.684822	chr7	80369450	80369685	LTR|ERVL|LTR16A1	-	chr7	80369546	80486546	STRG.48553.1	+	80369546,80486466	80369781,80486546	0.796296
vagina_female_adult_53_years	chrX	151960088	151960089	151960088	-	RAMPAGE_only	7	7	7	0.312585	2.521641	chrX	151960042	151960104	SINE|MIR|MIRb	+	chrX	151958645	151962593	GABRE|ENST00000476016.1	-	151958645,151959838,151962422	151959149,151959976,151962593	0.714286
vagina_female_adult_53_years	chr1	223804491	223804518	223804491	-	RAMPAGE_only	4	4	11	0.491206	2.913977	chr1	223804487	223804613	DNA|hAT-Charlie|MER5B	+	chr1	223795837	223814328	TP53BP2|ENST00000494100.1	-	223795837,223804207,223806845,223810430,223814239	223796123,223804348,223806947,223810513,223814328	0.727273
vagina_female_adult_53_years	chr13	113187330	113187344	113187343	-	High_confidence	5	5	12	0.535861	3.418296	chr13	113187335	113187925	LINE|L1|L1M4	-	chr13	113178271	113187399	PCID2|ENST00000473462.5	-	113178271,113178965,113179916,113180157,113181129,113184345,113185484,113187199	113178287,113179089,113180042,113180231,113181230,113184487,113185560,113187399	0.916667
vagina_female_adult_53_years	chr10	103746765	103746827	103746765	+	High_confidence	9	11	55	2.456029	5.106377	chr10	103746609	103747070	LINE|L2|L2b	+	chr10	103746778	103755409	SH3PXD2A-AS1|NR_038940.1	+	103746778,103749781,103753843	103747096,103749920,103755409	0.581818
vagina_female_adult_53_years	chr15	72563267	72563278	72563267	+	RAMPAGE_only	3	3	8	0.357241	2.750000	chr15	72563062	72563358	SINE|Alu|AluJr	-	chr15	72474644	72563500	ARIH1|ENST00000564062.1	+	72474644,72518066,72561482,72563393	72475014,72518134,72561549,72563500	0.500000
vagina_female_adult_53_years	chr11	122322378	122322392	122322391	-	RAMPAGE_only	6	9	18	0.803791	3.969816	chr11	122322142	122322989	LINE|L2|L2c	+	chr11	122089195	122309451	MIR100HG|ENST00000648734.1	-	122089195,122155550,122180335,122202763,122292283,122309249	122091719,122155632,122180398,122202909,122292403,122309451	0.500000
vagina_female_adult_53_years	chr19	41663293	41663340	41663296	-	RAMPAGE_only	8	9	36	1.607582	3.816340	chr19	41663183	41663495	LTR|ERVL-MaLR|THE1B	-	chr19	41651459	41652028	STRG.98860.1	-	41651459,41651925	41651631,41652028	0.638889
vagina_female_adult_53_years	chr22	38300373	38300387	38300373	-	High_confidence	2	2	8	0.357241	2.807355	chr22	38300351	38300466	SINE|MIR|MIRb	+	chr22	38296625	38300065	CSNK1E|ENST00000498529.5	-	38296625,38298785,38299894	38296686,38298934,38300065	0.500000
vagina_female_adult_53_years	chr2	201164062	201164084	201164062	+	RAMPAGE_only	3	4	16	0.714481	3.189898	chr2	201163983	201164293	SINE|Alu|AluSx1	+	chr2	201140274	201172688	CFLAR|NM_001202515.1	+	201140274,201145377,201149002,201149753,201160431,201163834	201140439,201145432,201149052,201149835,201160942,201172688	0.937500
vagina_female_adult_53_years	chr1	20895621	20895622	20895621	-	RAMPAGE_only	12	12	12	0.535861	3.251629	chr1	20895547	20896174	DNA|TcMar-Tigger|Tigger3b	+	chr1	20825026	20887362	STRG.1100.3	-	20825026,20827616,20829146,20840855,20849414,20851257,20853559,20854977,20857402,20860384,20862227,20864475,20865115,20879281,20886200	20825198,20827698,20829272,20841028,20849530,20851478,20853677,20855071,20857497,20860517,20862332,20864712,20865262,20879520,20887362	0.583333
vagina_female_adult_53_years	chr4	128427986	128428006	128428005	+	High_confidence	10	10	17	0.759136	3.734522	chr4	128427836	128428417	LTR|ERVL|LTR41	+	chr4	128428015	128519398	LOC100507487|NR_125882.1	+	128428015,128466607,128470049,128470351,128481672,128483328,128511410,128515856,128518755	128428298,128466772,128470216,128470549,128481750,128483487,128511645,128515998,128519398	0.705882
vagina_female_adult_53_years	chr12	109458981	109459006	109459005	-	High_confidence	4	5	8	0.357241	2.500000	chr12	109458651	109459343	LINE|L1|HAL1	+	chr12	109449960	109458985	KCTD10|ENST00000540089.5	-	109449960,109456117,109457629,109457991	109451813,109456313,109457682,109458985	1.000000
vagina_female_adult_53_years	chr9	92676698	92676699	92676698	-	High_confidence	17	18	20	0.893101	4.037401	chr9	92676681	92676881	LTR|ERVL-MaLR|MSTD	-	chr9	92676035	92676577	STRG.59141.1	-	92676035	92676577	0.650000
vagina_female_adult_53_years	chr14	24251609	24251886	24251627	-	RAMPAGE_only	92	97	693	30.945960	5.365363	chr14	24251574	24252061	DNA|TcMar-Mariner|MARNA	+	chr14	24248377	24260158	STRG.78839.3	-	24248377,24249219,24254663,24254971,24255363,24258284,24258534,24259074,24259703,24259939	24249089,24254288,24254824,24255253,24256077,24258388,24258673,24259249,24259811,24260158	1.000000
vagina_female_adult_53_years	chr7	101308299	101308325	101308299	+	High_confidence	13	15	51	2.277408	4.928367	chr7	101308328	101309221	LINE|L1|L1M2	+	chr7	101308339	101321149	LOC101927746|NR_110115.1	+	101308339,101310483,101321114	101308548,101310979,101321149	0.980392
vagina_female_adult_53_years	chr4	69853497	69853532	69853527	-	RAMPAGE_only	5	6	17	0.759136	3.250000	chr4	69853524	69853748	LINE|L2|L2b	+	chr4	69849125	69860139	STRG.28559.6	-	69849125,69855300,69857499	69854314,69855426,69860139	0.941176
vagina_female_adult_53_years	chr1	12572746	12572846	12572757	-	RAMPAGE_only	10	10	69	3.081200	5.117254	chr1	12572623	12572742	DNA|hAT-Charlie|MER117	-	chr1	12567909	12596396	DHRS3|NM_001324370.1	-	12567909,12572727,12578717,12579292,12580522,12596208	12568424,12572853,12578956,12579412,12580666,12596396	0.913043
vagina_female_adult_53_years	chr19	9140393	9140428	9140393	+	High_confidence	35	35	139	6.207054	5.952748	chr19	9140306	9140449	LTR|ERVL|LTR33B	+	chr19	9140396	9163408	ZNF317|ENST00000360385.7	+	9140396,9155924,9156611,9157267,9158825,9160113	9140592,9156041,9156748,9157394,9158908,9163408	0.870504
vagina_female_adult_53_years	chr13	29647530	29647625	29647624	+	High_confidence	8	8	27	1.205687	4.356558	chr13	29641706	29647706	LINE|L1|L1HS	-	chr13	29647692	29655478	LOC102723345|NR_135320.1	+	29647692,29655069	29647724,29655478	0.888889
vagina_female_adult_53_years	chr3	42809307	42809308	42809307	+	High_confidence	5	7	7	0.312585	2.807355	chr3	42809252	42809581	LTR|ERV1|MER39	-	chr3	42809461	42887974	ACKR2|ENST00000498111.5	+	42809461,42819630,42864465,42887537	42809532,42819711,42864859,42887974	0.571429
vagina_female_adult_53_years	chr22	39021382	39021398	39021397	+	High_confidence	5	7	11	0.491206	3.095795	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	1.000000
vagina_female_adult_53_years	chr5	40981728	40981946	40981878	+	RAMPAGE_only	32	32	316	14.111001	5.970398	chr5	40981792	40981922	SINE|MIR|MIR3	+	chr5	40909496	40982939	C7|NM_000587.2	+	40909496,40928579,40931063,40934324,40936337,40937551,40945197,40947601,40949903,40955386,40958032,40959448,40962084,40964740,40972402,40976749,40979724,40981391	40909616,40928635,40931139,40934466,40936485,40937690,40945368,40947845,40950014,40955553,40958261,40959620,40962172,40964873,40972594,40976840,40979909,40982939	0.996835
vagina_female_adult_53_years	chr2	9992852	9992895	9992878	+	RAMPAGE_only	10	11	32	1.428962	3.962103	chr2	9992830	9993029	DNA|hAT-Charlie|MER58A	-	chr2	9961164	9994478	STRG.9420.7	+	9961164,9962454,9963885,9964234,9965286,9986123,9990695,9992006	9961436,9962531,9964042,9964346,9965381,9986282,9990747,9994478	0.937500
vagina_female_adult_53_years	chr3	48968632	48968650	48968649	+	RAMPAGE_only	2	2	7	0.312585	2.584963	chr3	48968698	48968808	DNA|hAT-Charlie|Charlie15a	+	chr3	48926717	48983679	ARIH2|ENST00000452385.5	+	48926717,48945135,48961611,48964918,48967124,48968533,48970594,48973698,48974816,48974957,48979481,48980352,48981659,48982895,48983198	48927813,48945181,48961679,48964982,48967275,48968655,48970704,48973816,48974867,48974979,48979633,48980496,48981728,48982979,48983679	0.857143
vagina_female_adult_53_years	chr6	169689292	169689319	169689292	-	RAMPAGE_only	5	5	20	0.893101	3.441446	chr6	169689217	169689326	SINE|MIR|MIRb	+	chr6	169457354	169701586	WDR27|ENST00000423258.5	-	169457354,169582835,169602218,169613558,169632946,169634427,169636370,169638538,169643696,169647772,169649197,169651929,169658275,169659085,169659450,169660662,169662303,169664165,169665485,169672254,169688816,169701550	169457634,169582934,169602321,169613656,169633068,169634525,169636504,169638660,169643786,169647870,169649275,169652008,169658358,169659207,169659518,169660766,169662424,169664286,169665556,169672396,169689012,169701586	0.850000
vagina_female_adult_53_years	chr1	6208681	6208682	6208681	-	High_confidence	419	419	419	18.710472	4.548025	chr1	6208674	6208723	SINE|MIR|MIRc	+	chr1	6186691	6209244	RPL22|ENST00000471204.5	-	6186691,6192929,6197651,6208680,6209134	6186816,6193054,6197756,6208739,6209244	0.978520
vagina_female_adult_53_years	chr14	50756714	50756742	50756741	-	RAMPAGE_only	3	3	12	0.535861	3.277613	chr14	50756556	50757011	LTR|ERV1|MER101-int	+	chr14	50725827	50766795	NIN|ENST00000389869.7	-	50725827,50729522,50735515,50738139,50739307,50741581,50743415,50744242,50747991,50752517,50754562,50754741,50756491,50759856,50761789,50763825,50766306,50766779	50726066,50729723,50735617,50738286,50739487,50741728,50743529,50744365,50748105,50752733,50754632,50754867,50758630,50760359,50761911,50763964,50766396,50766795	0.833333
vagina_female_adult_53_years	chr19	12773311	12773328	12773311	-	High_confidence	12	12	22	0.982411	3.879664	chr19	12773232	12773546	SINE|Alu|AluJo	-	chr19	12771394	12773253	HOOK2|ENST00000588052.5	-	12771394,12772189,12772612,12772779,12772993	12771477,12772252,12772680,12772912,12773253	1.000000
vagina_female_adult_53_years	chr3	195688417	195688456	195688433	+	High_confidence	3	3	10	0.446551	2.725481	chr3	195688173	195688457	SINE|Alu|AluJb	-	chr3	195688425	195699116	MUC20-OT1|ENST00000626870.2	+	195688425,195689338,195689545,195696360,195699029	195688797,195689438,195689608,195696589,195699116	0.800000
vagina_female_adult_53_years	chr3	194486575	194486613	194486575	-	High_confidence	4	4	11	0.491206	2.921928	chr3	194486406	194486656	LINE|L1|L1MDb	+	chr3	194459888	194486659	ATP13A3|ENST00000457986.5	-	194459888,194460657,194462139,194485793,194486565	194459971,194460831,194462236,194485835,194486659	0.545455
vagina_female_adult_53_years	chr10	80521786	80521853	80521852	+	RAMPAGE_only	6	6	19	0.848446	3.614369	chr10	80521722	80521930	SINE|Alu|AluY	+	chr10	80454329	80522631	TSPAN14|ENST00000372164.7	+	80454329,80489216,80507227,80509300,80512143,80514018,80516203,80517904	80454371,80489314,80507374,80509471,80512269,80514063,80516323,80522631	0.894737
vagina_female_adult_53_years	chr12	8681673	8681677	8681676	+	High_confidence	20	20	30	1.339652	4.593069	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681676	8783098	RIMKLB|NR_123740.1	+	8681676,8713810,8749861,8751956,8753889,8773320,8777589,8780574,8782911	8681818,8714041,8750092,8752043,8754093,8773466,8777802,8780739,8783098	0.533333
vagina_female_adult_53_years	chr17	2666996	2667196	2667195	+	High_confidence	11	11	82	3.661715	5.531087	chr17	2667225	2667344	SINE|Alu|AluYc	+	chr17	2667293	2682038	PAFAH1B1|ENST00000397193.7	+	2667293,2670162,2672654,2674059,2676504,2680163,2681728	2667500,2670331,2672757,2674288,2676606,2680320,2682038	0.817073
vagina_female_adult_53_years	chr15	65244454	65244455	65244454	-	RAMPAGE_only	24	24	28	1.250342	4.208410	chr15	65244287	65244648	LTR|ERVL-MaLR|THE1B	-	chr15	65234459	65261007	PARP16|ENST00000559805.1	-	65234459,65248116,65259463,65260884	65234823,65248228,65259542,65261007	0.928571
vagina_female_adult_53_years	chr11	9993966	9993968	9993966	-	RAMPAGE_only	4	5	8	0.357241	2.807355	chr11	9993915	9994007	DNA|hAT-Ac|OldhAT1	+	chr11	9838038	10193957	SBF2|ENST00000533770.5	-	9838038,9842624,9845564,9846955,9850022,9852675,9853539,9856457,9858225,9895942,9961956,9963772,9968340,9989496,9992414,9992989,9993920,9998265,10000913,10002556,10028451,10029764,10031047,10042843,10193901	9839696,9842770,9845740,9847083,9850218,9852749,9853712,9856720,9858396,9896011,9962106,9963882,9968545,9989595,9992543,9993103,9993998,9998379,10001022,10002689,10028557,10029875,10031170,10042981,10193957	0.875000
vagina_female_adult_53_years	chr11	108223553	108223581	108223553	+	High_confidence	12	12	26	1.161032	4.053509	chr11	108223533	108223589	SINE|MIR|MIR	+	chr11	108223102	108236534	ATM|ENST00000530958.5	+	108223102,108227775,108229177,108235669	108227696,108227888,108229323,108236534	0.923077
vagina_female_adult_53_years	chr6	31587009	31587010	31587009	+	High_confidence	5	5	7	0.312585	2.584963	chr6	31586938	31587145	SINE|MIR|MIRb	+	chr6	31587021	31588909	LST1|ENST00000376090.6	+	31587021,31588517	31587318,31588909	0.857143
vagina_female_adult_53_years	chr1	243269805	243269806	243269805	+	RAMPAGE_only	8	8	10	0.446551	3.321928	chr1	243269606	243269808	LINE|L1|L1MDb	-	chr1	243256055	243500092	SDCCAG8|ENST00000366541.7	+	243256055,243270104,243270977,243274542,243286271,243293090,243304712,243307988,243316754,243330539,243341038,243344214,243378720,243415701,243417967,243426426,243489013,243499755	243256240,243270257,243271063,243274656,243286397,243293219,243304777,243308177,243316893,243330692,243341173,243344331,243378863,243415829,243418076,243426558,243489140,243500092	0.700000
vagina_female_adult_53_years	chr7	116239250	116239253	116239250	-	High_confidence	6	8	12	0.535861	3.251629	chr7	116238900	116239327	LTR|ERVL-MaLR|MLT1E2	-	chr7	116237928	116239249	AC073130.2|ENST00000456289.5	-	116237928,116239014	116238276,116239249	0.833333
vagina_female_adult_53_years	chr14	22909534	22909561	22909560	-	RAMPAGE_only	10	10	20	0.893101	3.932138	chr14	22909528	22909678	DNA|hAT-Ac|OldhAT1	-	chr14	22906027	22919110	RBM23|ENST00000554955.5	-	22906027,22908332,22909482,22911327,22918998	22906368,22908380,22909595,22911403,22919110	0.850000
vagina_female_adult_53_years	chr17	29517384	29517402	29517384	+	RAMPAGE_only	2	2	6	0.267930	2.584963	chr17	29517287	29517419	SINE|Alu|AluSx	-	chr17	29390924	29551903	TAOK1|NM_020791.2	+	29390924,29451454,29467144,29475669,29477660,29478250,29480367,29482196,29489663,29491783,29495559,29498317,29502588,29507895,29510863,29517452,29522279,29530406,29534117,29542560	29391024,29451680,29467216,29475771,29477706,29478347,29480481,29482288,29489757,29491865,29495727,29498521,29502723,29508132,29510992,29517656,29522519,29530619,29534300,29551903	0.833333
vagina_female_adult_53_years	chr19	51027478	51027668	51027667	-	High_confidence	54	54	413	18.442542	7.465131	chr19	51027625	51027792	SINE|MIR|MIRb	+	chr19	51022232	51027703	KLK11|ENST00000594768.5	-	51022232,51023091,51024044,51024637,51025591,51027456	51022697,51023228,51024310,51024794,51025666,51027703	0.767554
vagina_female_adult_53_years	chr2	71423276	71423357	71423276	+	RAMPAGE_only	13	24	122	5.447918	5.712546	chr2	71423244	71423287	DNA|hAT-Ac|OldhAT1	+	chr2	71407238	71435060	ZNF638|ENST00000409407.4	+	71407238,71418601,71422813,71424649,71426459,71428546,71431326,71433164,71434741	71408779,71418639,71424038,71424715,71427414,71428651,71431428,71433283,71435060	1.000000
vagina_female_adult_53_years	chr9	2072954	2072971	2072964	+	High_confidence	7	7	13	0.580516	3.251629	chr9	2072786	2073156	LTR|ERVL-MaLR|MLT1N2	-	chr9	2073096	2081860	SMARCA2|ENST00000635129.1	+	2073096,2073565,2076228,2077628,2081831	2073342,2073623,2076329,2077776,2081860	0.923077
vagina_female_adult_53_years	chr17	35367029	35367030	35367029	-	High_confidence	7	7	11	0.491206	3.121928	chr17	35366789	35367087	SINE|Alu|AluJb	+	chr17	35363621	35367294	SLFN11|ENST00000589562.1	-	35363621,35366946	35363826,35367294	0.818182
vagina_female_adult_53_years	chr11	120126075	120126146	120126106	-	High_confidence	46	46	152	6.787570	5.345212	chr11	120125991	120126114	SINE|MIR|MIR3	+	chr11	120122951	120126357	TRIM29|ENST00000530470.1	-	120122951,120125690	120123055,120126357	0.947368
vagina_female_adult_53_years	chr2	71139665	71139666	71139665	+	RAMPAGE_only	11	11	13	0.580516	3.546594	chr2	71139578	71139748	DNA|hAT-Charlie|MER5A	-	chr2	71130313	71150102	MPHOSPH10|NM_005791.2	+	71130313,71132897,71133947,71134625,71138489,71139794,71141231,71144427,71147998,71149222,71149865	71130754,71133576,71134105,71134797,71138631,71139862,71141369,71144538,71148106,71149453,71150102	0.769231
vagina_female_adult_53_years	chr14	77076158	77076194	77076188	-	RAMPAGE_only	20	20	85	3.795681	5.709174	chr14	77075719	77076235	LTR|ERV1|LTR78	+	chr14	77074216	77074519	STRG.81126.1	-	77074216	77074519	0.600000
vagina_female_adult_53_years	chr1	20775746	20775784	20775783	-	RAMPAGE_only	10	16	46	2.054133	4.433039	chr1	20775005	20775936	DNA|TcMar-Tigger|Tigger3b	+	chr1	20775449	20780541	HP1BP3|ENST00000487117.1	-	20775449,20779811,20780344	20776750,20779911,20780541	0.804348
vagina_female_adult_53_years	chr1	174238848	174238873	174238863	+	RAMPAGE_only	2	2	8	0.357241	2.521641	chr1	174233266	174239293	LINE|L1|L1PA2	-	chr1	174159589	174394145	RABGAP1L|ENST00000457696.1	+	174159589,174219124,174220971,174231144,174241482,174250474,174252443,174272413,174275832,174278612,174304985,174370978,174393994	174159657,174219295,174221164,174231355,174241657,174250632,174252590,174272480,174275935,174278779,174305127,174371072,174394145	0.750000
vagina_female_adult_53_years	chr6	89656003	89656087	89656086	-	RAMPAGE_only	6	7	26	1.161032	4.243856	chr6	89655976	89656370	LINE|L1|L1ME4b	+	chr6	89642498	89819723	MDN1|ENST00000369393.7	-	89642498,89645014,89646539,89648031,89648255,89650023,89650731,89652191,89652991,89654163,89655763,89656699,89658208,89658609,89661430,89662086,89662791,89664486,89668013,89670918,89672199,89672546,89673235,89674103,89675463,89676101,89677569,89678598,89680588,89683131,89683830,89684875,89685826,89686901,89687343,89688077,89688572,89689869,89690672,89692442,89694073,89695604,89696359,89698864,89699600,89700062,89700645,89701557,89701903,89706058,89707360,89708495,89710680,89712035,89712574,89713147,89714542,89715652,89716649,89718365,89718766,89719135,89722954,89723511,89725198,89727832,89728930,89730725,89732556,89738325,89740233,89743149,89743575,89745272,89745491,89747328,89749222,89749542,89750353,89751430,89753511,89754082,89756276,89758254,89758815,89761644,89762318,89771560,89772572,89774620,89776599,89780211,89781398,89785011,89787853,89789779,89790158,89793761,89794099,89794576,89803327,89819505	89644193,89645157,89646603,89648146,89648329,89650198,89650847,89652281,89653155,89654334,89655968,89656801,89658370,89658917,89661578,89662239,89662967,89664628,89668151,89671080,89672363,89672702,89673462,89674589,89675579,89676207,89677696,89678745,89680751,89683330,89683904,89684985,89685973,89687023,89687438,89688173,89688808,89690143,89690834,89693148,89694183,89695992,89696574,89699035,89699727,89700294,89700856,89701678,89702061,89706192,89707476,89708628,89710794,89712256,89712786,89713296,89714751,89715769,89716809,89718627,89719030,89719225,89723143,89723619,89725396,89727955,89729139,89730923,89732775,89738455,89740378,89743280,89743714,89745411,89745626,89747470,89749369,89749751,89750532,89751582,89753622,89754230,89756390,89758351,89758960,89761748,89762530,89771621,89772721,89774733,89776695,89780293,89781592,89785126,89787957,89789911,89790401,89793954,89794207,89794801,89803554,89819723	0.961538
vagina_female_adult_53_years	chr12	6355388	6355398	6355388	-	High_confidence	2	2	6	0.267930	2.584963	chr12	6355373	6355427	LINE|CR1|X6B_LINE	+	chr12	6353716	6355436	SCNN1A|ENST00000366131.6	-	6353716,6354437,6354749,6355271	6353887,6354555,6354848,6355436	0.666667
vagina_female_adult_53_years	chr20	37503994	37504100	37504099	-	High_confidence	29	30	89	3.974301	3.970411	chr20	37503129	37504179	LINE|L2|L2b	+	chr20	37499892	37503975	BLCAP|ENST00000613961.1	-	37499892	37503975	1.000000
vagina_female_adult_53_years	chr17	55882299	55882303	55882299	+	High_confidence	5	7	12	0.535861	3.584963	chr17	55882106	55882477	LTR|ERVL-MaLR|THE1C	+	chr17	55882300	56449186	ANKFN1|ENST00000635860.1	+	55882300,55938658,55965578,56046071,56227916,56326220,56350765,56353835,56372645,56374600,56440326,56442842,56449078	55882395,55938786,55965676,56046325,56227957,56326355,56350967,56354046,56372840,56374714,56440424,56442933,56449186	0.750000
vagina_female_adult_53_years	chr19	55069754	55069781	55069756	-	High_confidence	6	8	15	0.669826	3.456565	chr19	55069536	55070155	LINE|L2|L2a	+	chr19	55063900	55069531	RDH13|ENST00000587373.1	-	55063900,55069321	55064412,55069531	0.533333
vagina_female_adult_53_years	chr2	55618850	55618866	55618850	-	High_confidence	5	5	15	0.669826	3.521641	chr2	55618637	55618821	SINE|Alu|AluSc8	-	chr2	55618355	55618856	STRG.11379.1	-	55618355	55618856	0.866667
vagina_female_adult_53_years	chr8	39032718	39032753	39032736	+	RAMPAGE_only	3	3	13	0.580516	3.251629	chr8	39031444	39032803	LINE|L1|L1P2	-	chr8	38997025	39105144	ADAM9|ENST00000468065.5	+	38997025,39007885,39011657,39013964,39016117,39017218,39018852,39021642,39023155,39025802,39026676,39041945,39054480,39055576,39071297,39077227,39090046,39091258,39101862,39103606	38997160,39007983,39011716,39014043,39016194,39017414,39018918,39021714,39023325,39025884,39026810,39042117,39054573,39055772,39071403,39077411,39090188,39091346,39101930,39105144	0.615385
vagina_female_adult_53_years	chr5	154924477	154924495	154924494	-	RAMPAGE_only	5	6	11	0.491206	2.721928	chr5	154924406	154924453	DNA|hAT-Charlie|MER30	-	chr5	154891433	154921515	STRG.37083.2	-	154891433,154892386,154896091,154898439,154899190,154901338,154902538,154903079,154904506,154905362,154907590,154911726,154912898,154916997,154917930,154919966,154921342	154891742,154892549,154896343,154898650,154899310,154901486,154902676,154903175,154904629,154905476,154907818,154911898,154913038,154917179,154918004,154920103,154921515	0.909091
vagina_female_adult_53_years	chr1	110041777	110041825	110041824	+	High_confidence	6	6	23	1.027067	4.110093	chr1	110041871	110041959	LINE|L1|L1ME4b	+	chr1	110041170	110074641	STRIP1|ENST00000473429.5	+	110041170,110043087,110043638,110044839,110045014,110046679,110047541,110047771,110049111,110050955,110051682,110053664,110072454,110074126	110041861,110043270,110043856,110044905,110045078,110046751,110047616,110047869,110050409,110051060,110051887,110054802,110072596,110074641	0.695652
vagina_female_adult_53_years	chr7	87040212	87040223	87040212	-	High_confidence	5	6	10	0.446551	2.921928	chr7	87039756	87045768	LINE|L1|L1PA2	+	chr7	87039735	87040119	STRG.48697.2	-	87039735,87040017	87039871,87040119	0.600000
vagina_female_adult_53_years	chr10	70162088	70162092	70162088	-	High_confidence	5	7	9	0.401896	2.725481	chr10	70162057	70162333	SINE|Alu|AluJo	+	chr10	70161283	70161931	SAR1A|ENST00000477464.1	-	70161283,70161857	70161738,70161931	0.888889
vagina_female_adult_53_years	chr17	60086077	60086107	60086077	-	High_confidence	3	3	13	0.580516	3.022055	chr17	60085995	60086174	DNA|hAT-Charlie|MER117	+	chr17	60083599	60085401	WFDC21P|ENST00000589777.1	-	60083599,60085102	60083766,60085401	0.538462
vagina_female_adult_53_years	chr8	133255322	133255331	133255322	-	High_confidence	6	6	18	0.803791	3.683542	chr8	133255180	133255391	SINE|MIR|MIRb	+	chr8	133237175	133256228	NDRG1|ENST00000519278.5	-	133237175,133242022,133244354,133246615,133247874,133248714,133250439,133254538	133239119,133242074,133244390,133246663,133247926,133248771,133250543,133256228	1.000000
vagina_female_adult_53_years	chr21	37084034	37084077	37084076	+	High_confidence	4	4	8	0.357241	3.000000	chr21	37083879	37084118	DNA|hAT-Charlie|MER113B	+	chr21	37083625	37093402	TTC3|ENST00000484047.5	+	37083625,37087246,37087832,37088798,37090232,37091292,37093308	37084331,37087401,37088346,37088886,37090286,37091626,37093402	0.875000
vagina_female_adult_53_years	chr17	67920039	67920101	67920099	+	High_confidence	4	7	32	1.428962	4.456565	chr17	67920088	67920176	LINE|Penelope|Penelope1_Vert	-	chr17	67920099	67940545	BPTF|ENST00000582467.1	+	67920099,67922839,67924546,67928354,67928958,67929335,67931910,67940438	67920143,67922990,67924589,67928601,67929120,67929487,67932019,67940545	0.937500
vagina_female_adult_53_years	chr2	241250187	241250227	241250226	-	High_confidence	27	30	41	1.830858	3.934657	chr2	241250192	241250357	DNA|hAT-Charlie|MER5B	-	chr2	241229223	241250937	HDLBP|ENST00000487169.5	-	241229223,241230758,241233819,241235120,241236614,241238648,241239601,241239900,241242459,241246751,241247055,241248002,241248243,241249840	241230269,241230944,241233963,241235594,241236769,241238787,241239820,241240122,241242678,241246883,241247142,241248116,241248348,241250937	0.902439
vagina_female_adult_53_years	chr12	12183985	12184019	12184018	-	RAMPAGE_only	8	8	14	0.625171	3.546594	chr12	12183981	12184016	LINE|RTE-BovB|MamRTE1	-	chr12	12116028	12244304	LRP6|ENST00000538239.5	-	12116028,12120369,12121085,12124564,12125295,12126690,12130782,12131820,12135174,12138324,12147365,12148941,12150835,12158828,12159779,12162192,12164272,12165078,12179809,12181042,12183979,12186922,12203202,12244261	12119330,12120403,12121420,12124662,12125432,12126921,12130893,12132057,12135300,12138534,12147556,12149153,12151038,12159155,12159964,12162419,12164562,12165295,12179981,12181439,12184111,12187119,12203400,12244304	0.928571
vagina_female_adult_53_years	chr12	16353884	16353885	16353884	+	High_confidence	21	21	25	1.116377	3.823935	chr12	16353757	16354060	SINE|Alu|AluSz	-	chr12	16354230	16589580	MGST1|ENST00000538857.1	+	16354230,16357604,16367324,16383506,16589527	16354378,16357699,16367465,16383604,16589580	0.800000
vagina_female_adult_53_years	chr17	13931109	13931162	13931151	-	RAMPAGE_only	2	3	11	0.491206	3.121928	chr17	13931030	13931624	LTR|ERVL-MaLR|MLT1L	+	chr17	13776831	13892839	COX10-AS1|ENST00000577798.6	-	13776831,13790268,13865078,13880301,13892724	13777349,13790313,13865266,13880371,13892839	0.818182
vagina_female_adult_53_years	chr3	54637964	54638011	54637992	+	High_confidence	34	36	209	9.332909	6.067950	chr3	54636818	54639750	LTR|ERV1|HERVH-int	-	chr3	54637888	54849931	STRG.21590.2	+	54637888,54642127,54752598,54764217,54837158,54838567,54846392,54849485	54638092,54642241,54752677,54764351,54837230,54838648,54846467,54849931	0.617225
vagina_female_adult_53_years	chr12	131371504	131371523	131371504	-	High_confidence	8	8	14	0.625171	3.182006	chr12	131371471	131371655	LTR|ERVL|LTR33A	-	chr12	131352383	131371738	STRG.76004.1	-	131352383,131353686,131371390	131352999,131353783,131371738	0.857143
vagina_female_adult_53_years	chr14	100138792	100138814	100138812	+	RAMPAGE_only	4	7	16	0.714481	3.506891	chr14	100138741	100139027	LINE|L2|L2b	-	chr14	100065444	100140118	STRG.81910.2	+	100065444,100084686,100097480,100102303,100123538,100126706,100128518,100129562,100132718,100135904,100137577,100137739	100065511,100084855,100097658,100102379,100123602,100126771,100128748,100129684,100132779,100135968,100137644,100140118	0.812500
vagina_female_adult_53_years	chr13	75848950	75849020	75848990	+	High_confidence	3	3	16	0.714481	3.577820	chr13	75848621	75849022	LINE|L1|L1P5	-	chr13	75848975	75856717	LMO7|ENST00000482116.1	+	75848975,75853091,75855259,75856505	75849292,75853388,75855368,75856717	0.750000
vagina_female_adult_53_years	chr21	13934401	13934493	13934492	-	RAMPAGE_only	10	11	35	1.562927	4.593429	chr21	13934252	13936999	Retroposon|SVA|SVA_A	-	chr21	13909573	13979911	ANKRD20A11P|ENST00000451663.5	-	13909573,13910495,13911717,13915186,13916746,13917554,13925163,13927334,13932227,13933837,13937534,13939245,13940814,13945038,13951066,13951231,13954065,13958115,13960808,13967380,13969972,13971166,13975183,13975519,13979701	13909654,13910549,13911763,13915409,13916958,13917836,13925293,13927447,13932374,13934227,13938067,13939428,13940978,13945109,13951139,13951260,13954150,13958185,13960839,13967436,13970110,13971273,13975357,13975634,13979911	0.771429
vagina_female_adult_53_years	chr17	42403151	42403705	42403661	-	RAMPAGE_only	26	27	593	26.480454	7.169057	chr17	42403621	42403940	SINE|Alu|AluSx	-	chr17	42402448	42423320	PTRF|NM_012232.5	-	42402448,42422626	42405388,42423320	0.998314
vagina_female_adult_53_years	chr10	74969716	74969746	74969716	+	RAMPAGE_only	2	2	9	0.401896	2.725481	chr10	74969693	74969726	LINE|L2|L2a	-	chr10	74842619	75022125	KAT6B|ENST00000648369.1	+	74842619,74959969,74969659,74970019,74972506,74975398,74977315,74979223,74981786,74985079,75020581,75021125,75021880	74843478,74960078,74969775,74970101,74972639,74976330,74977437,74979339,74981928,74985241,75020813,75021285,75022125	1.000000
vagina_female_adult_53_years	chr7	141674463	141674476	141674463	-	RAMPAGE_only	4	5	11	0.491206	3.321928	chr7	141674396	141674980	LTR|ERVL|LTR84b	+	chr7	141661929	141701615	KIAA1147|ENST00000482493.1	-	141661929,141664171,141664903,141665186,141666286,141674066,141685477,141686558,141701555	141662851,141664240,141665054,141665318,141666386,141674220,141685636,141686658,141701615	0.636364
vagina_female_adult_53_years	chr17	15632737	15632740	15632737	-	High_confidence	4	5	9	0.401896	2.750000	chr17	15632736	15632847	SINE|MIR|MIRb	+	chr17	15628695	15632035	TRIM16|ENST00000577326.1	-	15628695,15631618	15629198,15632035	0.555556
vagina_female_adult_53_years	chr4	81154143	81154222	81154221	-	High_confidence	8	8	45	2.009478	4.852856	chr4	81153755	81154892	LINE|L1|L1PA3	+	chr4	81089596	81154253	PRKG2|ENST00000509474.5	-	81089596,81092385,81104369,81105812,81110447,81135154,81137392,81140532,81142793,81144231,81148883,81151959,81153643,81154101	81089803,81092452,81104432,81105935,81110611,81135296,81137482,81140669,81142947,81144330,81148952,81152054,81153721,81154253	0.822222
vagina_female_adult_53_years	chr2	171414675	171414676	171414675	-	RAMPAGE_only	24	25	26	1.161032	3.767894	chr2	171414444	171414743	SINE|Alu|AluJb	+	chr2	171331807	171433116	METTL8|ENST00000460539.5	-	171331807,171339183,171392042,171433025	171331867,171339554,171392197,171433116	0.538462
vagina_female_adult_53_years	chr19	7642258	7642317	7642309	+	High_confidence	6	6	38	1.696892	4.844324	chr19	7642297	7642376	SINE|MIR|MIR1_Amn	+	chr19	7642245	7647862	STRG.97344.2	+	7642245,7642428,7642765,7642982,7643164,7644613,7645196,7646248,7647161,7647353	7642333,7642536,7642823,7643048,7643245,7644752,7645306,7646344,7647247,7647862	0.894737
vagina_female_adult_53_years	chr1	89272747	89272784	89272783	-	High_confidence	4	4	10	0.446551	3.169925	chr1	89272452	89273890	LTR|ERV1|LTR12C	-	chr1	89262697	89272804	GBP5|ENST00000443807.1	-	89262697,89263735,89264685,89266345,89266956,89267416,89268728,89269365	89262785,89263948,89264966,89266588,89267153,89267526,89268856,89272804	0.900000
vagina_female_adult_53_years	chr20	8600707	8600739	8600707	+	High_confidence	10	10	45	2.009478	4.124969	chr20	8595101	8601127	LINE|L1|L1PA2	-	chr20	8600714	8658682	PLCB1|ENST00000628900.1	+	8600714,8628293,8646101,8647899,8649373,8658537	8600781,8628431,8646181,8647953,8649449,8658682	0.866667
vagina_female_adult_53_years	chr2	121448293	121448323	121448293	-	RAMPAGE_only	3	3	10	0.446551	3.169925	chr2	121448269	121448296	SINE|tRNA|LFSINE_Vert	+	chr2	121340721	121503220	CLASP1|ENST00000452274.6	-	121340721,121347037,121348511,121363171,121365093,121367587,121377498,121387121,121387762,121397139,121398321,121401508,121401867,121402594,121404370,121407470,121409023,121410865,121425138,121427403,121430072,121447336,121448275,121448952,121450912,121451789,121457686,121458839,121459979,121461100,121462531,121469807,121503166	121340947,121347154,121348718,121363300,121365284,121367831,121377649,121387228,121387906,121397283,121398400,121401672,121401870,121402663,121404434,121407715,121409047,121410969,121425306,121427430,121430177,121447507,121448325,121449120,121450990,121451849,121457757,121458975,121460125,121461193,121462605,121469960,121503220	0.800000
vagina_female_adult_53_years	chr9	123236930	123236943	123236930	-	RAMPAGE_only	4	4	10	0.446551	2.503258	chr9	123236851	123237154	SINE|Alu|AluSz	+	chr9	123179006	123213908	STRBP|ENST00000479114.2	-	123179006,123184131,123212584,123213588	123179227,123184298,123212708,123213908	0.900000
vagina_female_adult_53_years	chr2	234888775	234888795	234888788	-	High_confidence	4	4	17	0.759136	3.101881	chr2	234888389	234894419	LINE|L1|L1PA2	+	chr2	234887368	234888526	AC010148.1|ENST00000434572.1	-	234887368,234888279	234887817,234888526	0.588235
vagina_female_adult_53_years	chr9	111011657	111011692	111011657	-	High_confidence	3	3	9	0.401896	2.641604	chr9	111011255	111011741	LINE|CR1|L3	-	chr9	110972070	111011728	STRG.60081.6	-	110972070,110973480,111009147,111011547	110972220,110973558,111009201,111011728	1.000000
vagina_female_adult_53_years	chr1	54413478	54413493	54413492	-	High_confidence	6	6	11	0.491206	3.121928	chr1	54413263	54413464	LTR|ERVL-MaLR|MLT1I	-	chr1	54243236	54413479	SSBP3|ENST00000525990.1	-	54243236,54251615,54251793,54257126,54281437,54401860,54404575,54404857,54413355	54243299,54251692,54251860,54257186,54281527,54401945,54404637,54404930,54413479	0.636364
vagina_female_adult_53_years	chr17	49646471	49646496	49646495	-	High_confidence	4	4	12	0.535861	2.913977	chr17	49646281	49646534	SINE|Alu|AluSz	+	chr17	49621945	49646622	SPOP|ENST00000510476.5	-	49621945,49622732,49646115	49622067,49622876,49646622	0.833333
vagina_female_adult_53_years	chr8	102346472	102346494	102346493	-	RAMPAGE_only	8	10	23	1.027067	3.732159	chr8	102346474	102346770	SINE|Alu|AluSx	+	chr8	102252272	102412689	UBR5|NM_001282873.1	-	102252272,102257631,102258984,102261145,102261914,102264473,102265099,102266946,102268977,102270038,102271133,102272528,102275520,102275707,102276971,102278825,102279035,102280393,102281288,102285126,102285512,102286359,102287432,102288154,102289452,102293604,102293954,102294981,102295203,102295413,102295635,102296892,102297457,102298391,102298847,102299451,102299999,102304042,102305084,102311298,102311734,102312133,102312341,102313803,102314743,102323310,102326545,102327741,102329089,102329282,102342472,102345395,102346235,102346902,102360070,102360588,102361124,102361581,102412172	102254514,102257717,102259129,102261259,102262070,102264558,102265275,102267007,102269108,102270183,102271245,102272772,102275619,102275828,102277192,102278939,102279208,102280467,102281519,102285338,102285781,102286617,102287564,102288266,102289576,102293844,102294115,102295111,102295330,102295532,102295782,102296984,102297606,102298489,102298971,102299547,102300151,102304169,102305295,102311496,102311889,102312245,102312485,102313916,102314853,102323495,102326663,102327896,102329200,102329399,102342684,102345545,102346395,102347092,102360190,102360665,102361206,102361626,102412689	0.739130
vagina_female_adult_53_years	chr9	128261462	128261485	128261462	-	High_confidence	3	4	9	0.401896	3.000000	chr9	128261376	128261424	SINE|MIR|MIR3	-	chr9	128260125	128260991	GOLGA2|ENST00000486411.1	-	128260125,128260464	128260189,128260991	0.777778
vagina_female_adult_53_years	chr19	16863334	16863338	16863334	+	High_confidence	3	3	9	0.401896	2.750000	chr19	16863194	16863496	DNA|TcMar-Tigger|MER2	+	chr19	16863273	16878961	SIN3B|ENST00000595541.1	+	16863273,16865409,16866372,16869459,16871228,16876054,16876485,16877544,16878182,16878496	16863796,16865648,16866556,16870075,16871398,16876228,16876578,16877639,16878390,16878961	0.888889
vagina_female_adult_53_years	chr5	27472270	27472304	27472303	+	High_confidence	6	6	20	0.893101	4.021928	chr5	27472073	27472487	LTR|ERV1|MER61C	+	chr5	27472306	27494318	PURPL|ENST00000505775.5	+	27472306,27475534,27477638,27484925,27489281,27494118	27472519,27475695,27477801,27485029,27489386,27494318	0.550000
vagina_female_adult_53_years	chr1	205099767	205099773	205099772	-	RAMPAGE_only	6	6	11	0.491206	3.121928	chr1	205099767	205099820	LINE|RTE-BovB|MamRTE1	-	chr1	205086141	205122015	RBBP5|ENST00000367164.1	-	205086141,205094986,205096681,205097325,205098988,205099740,205099910,205100151,205101599,205103856,205105027,205114788,205115857,205121854	205088815,205095064,205096911,205097395,205099106,205099812,205100064,205100271,205101709,205104019,205105168,205114961,205115883,205122015	0.909091
vagina_female_adult_53_years	chr15	93000240	93000278	93000240	+	RAMPAGE_only	8	8	19	0.848446	3.836592	chr15	93000000	93000283	SINE|Alu|AluSx	+	chr15	92997301	93004646	CHD2|ENST00000629104.1	+	92997301,92998137,92998498,93000511,93002176,93004616	92997403,92998261,92998621,93000640,93002317,93004646	0.578947
vagina_female_adult_53_years	chr1	93324861	93324897	93324881	-	High_confidence	15	15	88	3.929646	5.210860	chr1	93324761	93324840	LINE|CR1|L3b	-	chr1	93264646	93324691	CCDC18-AS1|ENST00000415150.5	-	93264646,93305387,93315148,93318167,93324634	93264772,93305470,93315269,93318228,93324691	0.590909
vagina_female_adult_53_years	chrX	41343442	41343465	41343464	+	RAMPAGE_only	8	8	14	0.625171	3.521641	chrX	41343379	41343584	DNA|hAT-Charlie|MER58A	-	chrX	41342319	41349889	DDX3X|ENST00000647286.1	+	41342319,41342736,41343215,41343736,41344238,41345179,41345403,41346228,41346504,41346858,41347311,41347639	41342653,41342836,41343351,41344128,41344399,41345324,41345548,41346410,41346622,41347012,41347451,41349889	0.571429
vagina_female_adult_53_years	chr19	5548909	5548910	5548909	+	High_confidence	434	446	562	25.096147	5.948645	chr19	5548575	5549016	LTR|ERV1|LTR7Y	+	chr19	5548918	5552954	STRG.97090.1	+	5548918,5550735	5549162,5552954	0.615658
vagina_female_adult_53_years	chr6	26956577	26956589	26956586	-	High_confidence	2	2	8	0.357241	2.807355	chr6	26956055	26957143	LTR|ERV1|LTR12E	-	chr6	26871483	26956554	GUSBP2|ENST00000479900.5	-	26871483,26872123,26878699,26883342,26885358,26889009,26925119,26951085,26956388	26871579,26872250,26878835,26883517,26885443,26889197,26925275,26951159,26956554	0.875000
vagina_female_adult_53_years	chr1	94536388	94536389	94536388	-	RAMPAGE_only	11	12	16	0.714481	3.640224	chr1	94536317	94536428	SINE|Alu|AluJr4	-	chr1	94529309	94541637	F3|ENST00000370207.4	-	94529309,94533089,94535964,94540256,94541536	94530596,94533268,94536164,94540368,94541637	0.500000
vagina_female_adult_53_years	chr7	30576657	30576667	30576666	-	High_confidence	4	4	8	0.357241	2.521641	chr7	30576480	30576831	LTR|ERVL-MaLR|THE1B	-	chr7	30574422	30576742	GARS-DT|ENST00000584023.1	-	30574422,30576563	30574881,30576742	0.625000
vagina_female_adult_53_years	chr1	155343321	155343324	155343321	-	RAMPAGE_only	6	6	14	0.625171	3.467720	chr1	155343015	155343280	SINE|Alu|AluSz6	-	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.928571
vagina_female_adult_53_years	chr21	13857484	13857538	13857537	-	High_confidence	2	2	15	0.669826	3.521641	chr21	13856776	13857518	LTR|ERVL-MaLR|MSTA-int	-	chr21	13855910	13858469	STRG.102480.1	-	13855910	13858469	0.933333
vagina_female_adult_53_years	chr11	65437264	65437588	65437520	+	RAMPAGE_only	109	133	1665	74.350684	5.874830	chr11	65437458	65437592	LINE|L1|L1M4	-	chr11	65423637	65445540	STRG.67745.5	+	65423637,65437228	65437184,65445540	0.996997
vagina_female_adult_53_years	chr11	64226142	64226180	64226158	-	High_confidence	35	41	170	7.591361	6.717566	chr11	64225935	64226114	SINE|MIR|MIR3	-	chr11	64223855	64226158	TRPT1|ENST00000539595.5	-	64223855,64224099,64224284,64224800,64225785	64223967,64224210,64224717,64225580,64226158	0.970588
vagina_female_adult_53_years	chr7	107580245	107580267	107580245	+	High_confidence	423	425	2134	95.293910	6.993201	chr7	107580184	107580571	LINE|L1|L1M4b	-	chr7	107580245	107618615	BCAP29|ENST00000465919.5	+	107580245,107583881,107593954,107595866,107600396,107613331,107618327	107580301,107583982,107594105,107596002,107600505,107613432,107618615	0.947985
vagina_female_adult_53_years	chr7	43881909	43881926	43881909	-	High_confidence	5	6	16	0.714481	3.456565	chr7	43881785	43881943	LINE|L2|L2	+	chr7	43878943	43881896	URGCP|ENST00000467410.1	-	43878943,43881658	43879260,43881896	0.812500
vagina_female_adult_53_years	chr11	68180140	68180142	68180140	-	High_confidence	3	6	7	0.312585	2.584963	chr11	68180123	68180214	SINE|MIR|MIRc	+	chr11	68171118	68180165	KMT5B|ENST00000323599.10	-	68171118,68171231,68171542,68173803,68174087,68175017,68180131	68171151,68171251,68171709,68173913,68174210,68175183,68180165	0.857143
vagina_female_adult_53_years	chr12	8663068	8663109	8663108	-	High_confidence	3	3	12	0.535861	3.277613	chr12	8663102	8663238	SINE|Alu|AluSq2	-	chr12	8645942	8662888	MFAP5|NM_003480.3	-	8645942,8649500,8650501,8651661,8654436,8655414,8655785,8660862,8662046,8662626	8648203,8649574,8650589,8651691,8654481,8655447,8655830,8660898,8662106,8662888	0.916667
vagina_female_adult_53_years	chr17	1369710	1369740	1369739	-	RAMPAGE_only	2	2	7	0.312585	2.584963	chr17	1369508	1369695	LINE|L1|L1MB8	-	chr17	1344538	1365058	YWHAE|ENST00000466227.6	-	1344538,1354210,1361929,1364858	1345499,1354347,1362008,1365058	0.714286
vagina_female_adult_53_years	chr12	6016515	6016516	6016515	-	RAMPAGE_only	5	6	8	0.357241	2.807355	chr12	6016356	6016502	SINE|MIR|MIR3	-	chr12	5948873	6124675	VWF|ENST00000261405.9	-	5948873,5949785,5951843,5952390,5953495,5967485,5968126,5969210,5971598,5976110,5981785,5983149,5985044,5985562,5991818,5993861,5994414,5996001,6011616,6012086,6013480,6016088,6016515,6016753,6018364,6021899,6022739,6023630,6025579,6025905,6029341,6031443,6034687,6036387,6044290,6046722,6052542,6056856,6057848,6062953,6064245,6065136,6071296,6072330,6073618,6075334,6095459,6110373,6110865,6121173,6123141,6124420	5949203,5949883,5951883,5952519,5953594,5967602,5968167,5969391,5971709,5976260,5981991,5983254,5985119,5985665,5992018,5994203,5994607,5996222,6011794,6012130,6013645,6016232,6016656,6016870,6019743,6022035,6022898,6023787,6025693,6026046,6029488,6031578,6034826,6036491,6044451,6046817,6052783,6057072,6058044,6063054,6064384,6065273,6071343,6072442,6073741,6075551,6095584,6110582,6110968,6121338,6123196,6124675	0.875000
vagina_female_adult_53_years	chr9	16226899	16226922	16226921	-	RAMPAGE_only	8	8	13	0.580516	3.392747	chr9	16223083	16229454	LINE|L1|L1PA7	+	chr9	16203934	16253107	C9orf92|NM_001271829.1	-	16203934,16215215,16215771,16253039	16204038,16215279,16215899,16253107	0.923077
vagina_female_adult_53_years	chrX	136222393	136222421	136222420	-	RAMPAGE_only	4	4	9	0.401896	2.500000	chrX	136222161	136222377	SINE|MIR|MIR	-	chrX	136216813	136220813	MAP7D3|ENST00000471510.1	-	136216813,136219397,136219592,136220764	136217258,136219495,136219671,136220813	0.777778
vagina_female_adult_53_years	chr9	131454989	131455004	131454989	+	RAMPAGE_only	5	5	13	0.580516	3.392747	chr9	131454923	131455021	SINE|Alu|AluSx3	-	chr9	131430089	131500171	PRRC2B|ENST00000357304.8	+	131430089,131432616,131436619,131438988,131444184,131446400,131447084,131447661,131455075,131459163,131464762,131467562,131470787,131473507,131474453,131477743,131478473,131479251,131481725,131482370,131482709,131483358,131484685,131484947,131486084,131487166,131487855,131491424,131492168,131494404,131495739	131430259,131432794,131436722,131439061,131444328,131446642,131447206,131447804,131455166,131459356,131465078,131467753,131470983,131473724,131476535,131477949,131478619,131479393,131481808,131482562,131482907,131483445,131484790,131485140,131486182,131487294,131488096,131491580,131492260,131494486,131500171	0.846154
vagina_female_adult_53_years	chr1	195722234	195722295	195722275	-	High_confidence	24	29	68	3.036544	4.820098	chr1	195721970	195723453	LTR|ERV1|LTR12C	-	chr1	195568807	195722368	STRG.6986.1	-	195568807,195690604,195721819	195568995,195690765,195722368	1.000000
vagina_female_adult_53_years	chr5	79762921	79762940	79762921	+	RAMPAGE_only	4	4	9	0.401896	2.500000	chr5	79762757	79762932	LINE|L1|L1ME4b	+	chr5	79738141	79800240	CMYA5|ENST00000506603.5	+	79738141,79743826,79745221,79747090,79752675,79758752,79761810,79788970,79790969,79793436,79799369	79739403,79743922,79745455,79747113,79752794,79758902,79763209,79789104,79791069,79793610,79800240	0.888889
vagina_female_adult_53_years	chr16	84554074	84554108	84554074	-	High_confidence	9	12	19	0.848446	3.681881	chr16	84553795	84554203	LTR|ERVL|LTR67B	-	chr16	84553638	84553923	STRG.89720.1	-	84553638	84553923	0.894737
vagina_female_adult_53_years	chr9	121313947	121314021	121314002	+	RAMPAGE_only	70	75	366	16.343754	5.917227	chr9	121314047	121314193	SINE|MIR|MIR3	+	chr9	121311470	121331890	GSN|ENST00000373807.5	+	121311470,121313933,121317085,121318405,121318664,121321267,121324553,121326511,121327307,121328890,121329237,121331387	121312488,121314023,121317218,121318494,121318880,121321401,121324644,121326682,121327482,121329015,121329315,121331890	0.994536
vagina_female_adult_53_years	chr9	127517376	127517407	127517406	-	RAMPAGE_only	7	7	18	0.803791	3.381580	chr9	127517274	127517652	LINE|L2|L2a	+	chr9	127505342	127569088	FAM129B|ENST00000373312.3	-	127505342,127507866,127508092,127508421,127508975,127510145,127516856,127517111,127517825,127523678,127525057,127527193,127531647,127568819	127507431,127507978,127508200,127508538,127509131,127510333,127517019,127517216,127517941,127523846,127525163,127527322,127531778,127569088	0.777778
vagina_female_adult_53_years	chr11	121444435	121444458	121444435	+	RAMPAGE_only	4	4	14	0.625171	3.182006	chr11	121444297	121444542	SINE|MIR|MIRb	-	chr11	121452202	121633762	SORL1|NM_003105.5	+	121452202,121470006,121478117,121488031,121490042,121496868,121513002,121514151,121520656,121522585,121522915,121532463,121543547,121545242,121549959,121550584,121553936,121555186,121557313,121558590,121559518,121566939,121570156,121574240,121577280,121583457,121586221,121588019,121589258,121590039,121591000,121595622,121604192,121605112,121605401,121606844,121607185,121608103,121611075,121612735,121614870,121618773,121619752,121621063,121622161,121625084,121627554,121629495	121452616,121470123,121478243,121488193,121490110,121497049,121513104,121514321,121520849,121522703,121522989,121532552,121543726,121545429,121550088,121550670,121554109,121555318,121557405,121558837,121559657,121567113,121570270,121574363,121577400,121583583,121586329,121588151,121589390,121590174,121591156,121595772,121604324,121605239,121605571,121606957,121607290,121608176,121611158,121612832,121615055,121618893,121619917,121621238,121622268,121625277,121627767,121633762	0.857143
vagina_female_adult_53_years	chr15	34988764	34988765	34988764	-	High_confidence	5	5	8	0.357241	2.807355	chr15	34988698	34988791	SINE|MIR|MIR	+	chr15	34978340	34988296	ZNF770|NM_014106.3	-	34978340,34987556,34988115	34983490,34987673,34988296	0.500000
vagina_female_adult_53_years	chr1	19344364	19344429	19344364	-	RAMPAGE_only	12	12	65	2.902579	5.288910	chr1	19344270	19344357	SINE|MIR|MIRb	-	chr1	19338778	19419751	CAPZB|ENST00000375144.5	-	19338778,19344357,19345186,19356634,19357421,19378539,19385504,19419660	19339617,19344434,19345252,19356751,19357563,19378653,19385626,19419751	0.969231
vagina_female_adult_53_years	chr2	230925264	230925265	230925264	-	High_confidence	7	8	9	0.401896	2.947703	chr2	230925193	230925329	SINE|MIR|MIR3	+	chr2	230907317	230925226	GPR55|ENST00000444078.5	-	230907317,230909621,230925167	230908310,230911096,230925226	1.000000
vagina_female_adult_53_years	chr7	99410092	99410113	99410092	+	High_confidence	2	2	9	0.401896	2.750000	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.888889
vagina_female_adult_53_years	chr12	8681599	8681600	8681599	+	High_confidence	10	10	11	0.491206	2.921928	chr12	8681348	8682152	LTR|ERVL|MER21C	+	chr12	8681599	8714161	RIMKLB|ENST00000538758.1	+	8681599,8713810	8681818,8714161	0.545455
vagina_female_adult_53_years	chr2	11534023	11534039	11534038	+	High_confidence	3	3	8	0.357241	2.807355	chr2	11533857	11534477	DNA|TcMar-Tigger|Tigger9b	-	chr2	11534115	11642786	GREB1|NM_014668.3	+	11534115,11556453,11562462,11566479,11576352,11578296,11580703,11585160,11585761,11588745,11592775,11595250,11596110,11597780,11598679,11600799,11602405,11610687,11612494,11615090,11616630,11618287,11620904,11625153,11626961,11629947,11631908,11632888,11634130,11635269,11637715,11638670,11640290	11534254,11556771,11562582,11566656,11576535,11578431,11580832,11585274,11585905,11588931,11593126,11595379,11596239,11597978,11598860,11600995,11602542,11611027,11612610,11615290,11616720,11618919,11621007,11625312,11627104,11630109,11632113,11633063,11634349,11635405,11637916,11638809,11642786	0.750000
vagina_female_adult_53_years	chr18	2589112	2589121	2589120	+	RAMPAGE_only	9	11	16	0.714481	3.640224	chr18	2588816	2589166	LINE|L2|L2a	-	chr18	2584827	2601402	STRG.94601.1	+	2584827,2587829,2589203,2590017,2595415,2599018,2601395	2585202,2587923,2589310,2590162,2595621,2599171,2601402	0.937500
vagina_female_adult_53_years	chr6	31186054	31186118	31186054	-	High_confidence	16	16	69	3.081200	5.738818	chr6	31185414	31186290	LTR|ERV1|Harlequin-int	-	chr6	31185637	31186037	STRG.39243.1	-	31185637	31186037	0.507246
vagina_female_adult_53_years	chrX	48683361	48683363	48683361	+	High_confidence	9	17	17	0.759136	3.750000	chrX	48683068	48683385	SINE|Alu|AluSz6	-	chrX	48683778	48691427	WAS|ENST00000376701.4	+	48683778,48684282,48685546,48685733,48685945,48686080,48686780,48688053,48688299,48688659,48689319,48691106	48683985,48684423,48685633,48685836,48685987,48686134,48686955,48688096,48688453,48689066,48689434,48691427	0.882353
vagina_female_adult_53_years	chr3	129488295	129488342	129488295	+	High_confidence	3	5	21	0.937756	3.725651	chr3	129488271	129488306	SINE|5S-Deu-L2|AmnSINE1	+	chr3	129487505	129520355	IFT122|ENST00000511425.5	+	129487505,129488256,129492140,129499901,129502710,129504318,129506408,129507667,129512311,129514388,129515487,129517468,129519106,129519567,129520175	129487927,129488397,129492194,129500068,129502882,129504421,129506549,129507762,129512412,129514554,129515599,129517594,129519186,129519732,129520355	0.809524
vagina_female_adult_53_years	chr3	8611899	8611919	8611918	-	High_confidence	5	5	12	0.535861	3.027169	chr3	8611524	8617535	LINE|L1|L1PA3	+	chr3	8498608	8611924	LMCD1-AS1|ENST00000439407.1	-	8498608,8603243,8611227,8611857	8498849,8603379,8611359,8611924	0.666667
vagina_female_adult_53_years	chr11	74876589	74876613	74876612	+	High_confidence	3	3	7	0.312585	2.807355	chr11	74875874	74877162	LTR|ERV1|HUERS-P3-int	+	chr11	74876537	74911308	STRG.68274.3	+	74876537,74911261	74876977,74911308	0.857143
vagina_female_adult_53_years	chr2	11534092	11534098	11534092	+	High_confidence	6	6	10	0.446551	2.921928	chr2	11533857	11534477	DNA|TcMar-Tigger|Tigger9b	-	chr2	11534115	11642786	GREB1|NM_014668.3	+	11534115,11556453,11562462,11566479,11576352,11578296,11580703,11585160,11585761,11588745,11592775,11595250,11596110,11597780,11598679,11600799,11602405,11610687,11612494,11615090,11616630,11618287,11620904,11625153,11626961,11629947,11631908,11632888,11634130,11635269,11637715,11638670,11640290	11534254,11556771,11562582,11566656,11576535,11578431,11580832,11585274,11585905,11588931,11593126,11595379,11596239,11597978,11598860,11600995,11602542,11611027,11612610,11615290,11616720,11618919,11621007,11625312,11627104,11630109,11632113,11633063,11634349,11635405,11637916,11638809,11642786	0.800000
vagina_female_adult_53_years	chr14	103675448	103675478	103675460	+	High_confidence	3	4	9	0.401896	2.750000	chr14	103675417	103675531	DNA|TcMar-Tigger|Tigger4a	+	chr14	103675563	103679798	KLC1|ENST00000553436.5	+	103675563,103675688,103677414,103679383	103675601,103675756,103677523,103679798	0.666667
vagina_female_adult_53_years	chr15	42675586	42675604	42675586	+	High_confidence	2	2	9	0.401896	2.750000	chr15	42675586	42675640	LINE|L2|L2a	+	chr15	42675537	42720981	STRG.83456.4	+	42675537,42675871,42681421,42681752,42684115,42694527,42695139,42695742,42716676,42716926,42717730,42717976,42718434,42718751,42719472	42675746,42675975,42681612,42682575,42694342,42694725,42695323,42695880,42716764,42717048,42717795,42718179,42718514,42718910,42720981	0.888889
vagina_female_adult_53_years	chr9	20658653	20658692	20658691	+	High_confidence	5	5	9	0.401896	2.725481	chr9	20655632	20658802	LINE|L1|L1HS	-	chr9	20658353	20791504	STRG.57398.3	+	20658353,20694519,20715321,20717793,20720379,20740235,20758089,20764868,20770031,20778680,20781726,20789350	20658826,20694564,20715410,20717868,20720534,20740340,20758191,20765073,20770238,20778768,20781929,20791504	0.666667
vagina_female_adult_53_years	chr6	27367612	27367613	27367612	-	RAMPAGE_only	4	4	7	0.312585	2.584963	chr6	27367435	27367797	LTR|ERVL-MaLR|MSTA	-	chr6	27357822	27371525	ZNF204P|NR_002722.2	-	27357822,27363178,27367516,27370135	27360221,27363302,27367612,27371525	0.857143
vagina_female_adult_53_years	chr2	200889279	200889318	200889293	-	High_confidence	8	8	35	1.562927	4.793345	chr2	200889151	200889251	DNA|hAT-Blackjack|MER94	-	chr2	200871266	200889303	PPIL3|ENST00000409449.5	-	200871266,200876918,200881420,200885261,200885697,200887612,200889243	200871521,200877037,200881488,200885367,200885772,200887685,200889303	0.514286
vagina_female_adult_53_years	chr5	151687139	151687200	151687193	-	High_confidence	5	6	22	0.982411	4.011365	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151661095	151687165	SPARC|ENST00000231061.8	-	151661095,151664086,151666360,151667466,151669663,151671572,151673128,151674611,151676131,151686864	151663599,151664235,151666509,151667600,151669784,151671694,151673216,151674674,151676201,151687165	0.818182
vagina_female_adult_53_years	chr14	101819770	101819813	101819812	+	RAMPAGE_only	3	3	12	0.535861	2.845351	chr14	101819651	101819923	SINE|Alu|AluJb	-	chr14	101761861	101821098	PPP2R5C|ENST00000556068.5	+	101761861,101762904,101786017,101818026	101761920,101762970,101786183,101821098	0.583333
vagina_female_adult_53_years	chr2	229586885	229586927	229586885	-	High_confidence	7	9	29	1.294997	4.651084	chr2	229586853	229586914	LINE|L2|L2b	+	chr2	229580153	229587177	DNER|ENST00000482831.1	-	229580153,229585857,229586693	229580344,229586024,229587177	0.620690
vagina_female_adult_53_years	chrX	5726324	5726325	5726324	-	High_confidence	39	43	51	2.277408	4.033844	chrX	5726183	5726882	LTR|ERV1|LTR8	-	chrX	5653420	5726305	AC110995.1|ENST00000422914.1	-	5653420,5669405,5725929	5653703,5669606,5726305	0.941176
vagina_female_adult_53_years	chr4	8436138	8436153	8436138	+	High_confidence	6	6	12	0.535861	3.459432	chr4	8435519	8436510	LTR|ERV1|HERV3-int	+	chr4	8436139	8439301	TRMT44|ENST00000532937.1	+	8436139,8438791	8436399,8439301	0.833333
vagina_female_adult_53_years	chrX	73837439	73837450	73837439	-	RAMPAGE_only	15	15	25	1.116377	3.429275	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	1.000000
vagina_female_adult_53_years	chr1	28476003	28476053	28476019	+	RAMPAGE_only	7	7	20	0.893101	4.037401	chr1	28475723	28476027	SINE|Alu|AluSq2	-	chr1	28473465	28500278	STRG.1451.1	+	28473465,28476106,28480450,28489169,28490950,28491649,28493014,28496533	28474151,28476291,28480604,28489225,28491012,28491787,28493091,28500278	0.650000
vagina_female_adult_53_years	chr19	52093957	52093991	52093971	-	High_confidence	5	6	19	0.848446	3.947703	chr19	52093852	52094032	SINE|Alu|AluJb	+	chr19	52076907	52093899	ZNF841|ENST00000599430.1	-	52076907,52084786,52088936,52093845	52077084,52084878,52089002,52093899	0.736842
vagina_female_adult_53_years	chr1	16151161	16151169	16151161	-	RAMPAGE_only	3	3	9	0.401896	2.725481	chr1	16151109	16151253	SINE|MIR|MIR3	-	chr1	16124336	16156087	EPHA2|NM_004431.3	-	16124336,16129433,16130225,16131720,16132063,16132377,16133179,16133480,16133859,16134467,16135035,16135654,16137852,16138274,16148377,16150895,16155847	16125320,16129589,16130419,16131870,16132273,16132439,16133368,16133606,16133915,16134567,16135189,16135770,16138185,16138430,16149047,16150963,16156087	0.666667
vagina_female_adult_53_years	chr2	9995685	9995696	9995685	+	High_confidence	3	3	9	0.401896	3.000000	chr2	9995657	9995770	SINE|MIR|MIR3	+	chr2	9995305	10000866	GRHL1|ENST00000480736.1	+	9995305,9995878,9996315,9998964,10000592	9995360,9995970,9996401,9999029,10000866	0.888889
vagina_female_adult_53_years	chr22	38300283	38300305	38300283	-	High_confidence	5	5	12	0.535861	3.095795	chr22	38300183	38300249	SINE|MIR|MIR	-	chr22	38296625	38300065	CSNK1E|ENST00000498529.5	-	38296625,38298785,38299894	38296686,38298934,38300065	0.500000
vagina_female_adult_53_years	chr9	92536601	92536602	92536601	-	High_confidence	10	10	10	0.446551	3.121928	chr9	92536588	92536667	SINE|MIR|MIR3	+	chr9	92517687	92536655	ECM2|ENST00000395534.2	-	92517687,92522574,92535932,92536600	92517875,92522893,92535982,92536655	0.900000
vagina_female_adult_53_years	chr5	151687240	151687251	151687244	-	High_confidence	8	9	22	0.982411	4.368523	chr5	151687169	151687326	SINE|MIR|MIR3	-	chr5	151667473	151687231	STRG.37017.2	-	151667473,151669663,151671572,151673128,151674611,151676131,151686864,151687176	151667600,151669784,151671694,151673216,151674674,151676201,151686913,151687231	0.590909
vagina_female_adult_53_years	chr18	42027544	42027545	42027544	+	RAMPAGE_only	5	5	7	0.312585	2.807355	chr18	42027565	42027649	DNA|hAT-Charlie|MER58B	+	chr18	42025781	42037817	PIK3C3|ENST00000590013.2	+	42025781,42027442,42029324,42033825,42037691	42025939,42027548,42029441,42033957,42037817	0.714286
vagina_female_adult_53_years	chr5	34244736	34244816	34244760	-	High_confidence	5	5	35	1.562927	4.786426	chr5	34244283	34245367	LTR|ERV1|LTR12E	-	chr5	34182826	34244796	AC138409.2|ENST00000508395.5	-	34182826,34200820,34218294,34239374,34244615	34182867,34200921,34218450,34239448,34244796	0.542857
vagina_female_adult_53_years	chr19	17336685	17336720	17336685	+	High_confidence	14	14	37	1.652237	4.303784	chr19	17336675	17336719	DNA|hAT-Tip100|MamTip2	+	chr19	17336685	17337348	GTPBP3|ENST00000595381.1	+	17336685,17336819	17336727,17337348	0.918919
vagina_female_adult_53_years	chr12	131371692	131371721	131371692	-	High_confidence	3	3	12	0.535861	2.732159	chr12	131371471	131371655	LTR|ERVL|LTR33A	-	chr12	131352383	131371738	STRG.76004.1	-	131352383,131353686,131371390	131352999,131353783,131371738	0.833333
vagina_female_adult_53_years	chr2	171555258	171555786	171555785	+	RAMPAGE_only	29	29	630	28.132691	7.013737	chr2	171555665	171555905	SINE|MIR|MIR	-	chr2	171522476	171557646	CYBRD1|ENST00000375252.3	+	171522476,171553345,171554523	171522738,171553500,171557646	0.998413
vagina_female_adult_53_years	chr6	42403667	42403719	42403667	-	RAMPAGE_only	3	4	11	0.491206	2.663533	chr6	42403232	42403669	LTR|ERVL-MaLR|MLT1C	+	chr6	42228125	42451261	TRERF1|ENST00000372917.8	-	42228125,42232680,42236204,42243247,42246455,42254850,42256727,42256962,42258134,42259338,42264703,42265750,42268153,42269498,42300637,42362946,42451176	42228669,42232892,42236411,42243361,42246544,42254926,42256831,42257102,42258201,42259723,42264854,42265797,42269251,42269848,42300749,42363079,42451261	0.818182
vagina_female_adult_53_years	chr14	91462126	91462236	91462223	-	High_confidence	17	18	115	5.135333	5.635491	chr14	91462165	91462227	LINE|CR1|L3	-	chr14	91458329	91461684	PPP4R3A|ENST00000557382.1	-	91458329,91461380	91458869,91461684	0.826087
vagina_female_adult_53_years	chr12	115763101	115763115	115763101	-	High_confidence	3	3	9	0.401896	3.000000	chr12	115763026	115763144	LINE|L2|L2a	+	chr12	115762528	115762983	STRG.75611.1	-	115762528	115762983	0.777778
vagina_female_adult_53_years	chrX	16712859	16712908	16712889	-	High_confidence	3	3	15	0.669826	3.664498	chrX	16712850	16712965	LINE|L2|L2a	-	chrX	16588305	16712936	CTPS2|ENST00000380241.7	-	16588305,16590751,16609540,16617149,16620276,16639146,16667513,16667661,16670579,16678361,16683093,16689449,16691539,16693140,16693370,16698235,16698922,16702736,16712721	16589775,16590862,16609685,16617246,16620332,16639243,16667557,16667724,16670674,16678450,16683226,16689601,16691620,16693224,16693487,16698336,16699093,16702941,16712936	0.866667
vagina_female_adult_53_years	chr3	33864030	33864091	33864090	+	High_confidence	4	4	28	1.250342	4.546594	chr3	33864096	33864151	LINE|L2|L2a	+	chr3	33863895	33866468	PDCD6IP|ENST00000473593.1	+	33863895,33865242,33866350	33864129,33865430,33866468	0.714286
vagina_female_adult_53_years	chr17	69314704	69314705	69314704	-	High_confidence	19	19	25	1.116377	3.795089	chr17	69314504	69315502	LINE|L1|L1MD2	+	chr17	69306762	69315360	ABCA5|ENST00000593253.5	-	69306762,69308279,69309261,69313091,69314313	69306954,69308368,69309423,69313296,69315360	0.920000
vagina_female_adult_53_years	chr19	53558492	53558509	53558508	+	RAMPAGE_only	4	4	12	0.535861	3.584963	chr19	53557977	53558807	LTR|ERVL|MER21A	-	chr19	53557300	53560782	STRG.99723.18	+	53557300,53559335	53558909,53560782	0.666667
vagina_female_adult_53_years	chr11	64807557	64807558	64807557	-	RAMPAGE_only	9	9	9	0.401896	3.169925	chr11	64807350	64807564	SINE|MIR|MIRc	-	chr11	64804374	64806368	MEN1|ENST00000478548.1	-	64804374,64805033,64805634	64804816,64805198,64806368	0.555556
vagina_female_adult_53_years	chr20	37344683	37344713	37344683	+	High_confidence	5	5	22	0.982411	4.321928	chr20	37344715	37344779	SINE|MIR|MIRc	+	chr20	37344684	37405432	SRC|NM_005417.4	+	37344684,37365203,37382618,37384149,37386074,37393894,37394173,37396161,37397698,37400114,37401601,37402434,37402748,37403170	37344887,37365277,37382786,37384403,37386174,37393993,37394277,37396311,37397854,37400294,37401678,37402588,37402880,37405432	0.590909
vagina_female_adult_53_years	chr16	21048703	21048704	21048703	-	RAMPAGE_only	9	9	10	0.446551	3.169925	chr16	21042672	21048703	LINE|L1|L1PA2	-	chr16	20996858	21063000	DNAH3|ENST00000572640.5	-	20996858,21000223,21003103,21019623,21021970,21024595,21027026,21031044,21033973,21036713,21037760,21039851,21042026,21049568,21049909,21051669,21054419,21058085,21060263,21062481,21062771	20997462,21000518,21003207,21019869,21022100,21024701,21027127,21031286,21034085,21036848,21037980,21039943,21042203,21049682,21050018,21051868,21054534,21058196,21060356,21062683,21063000	0.600000
vagina_female_adult_53_years	chr2	201116002	201116034	201116018	+	High_confidence	4	4	25	1.116377	3.886842	chr2	201115783	201116088	SINE|Alu|AluSg	+	chr2	201116103	201139877	CFLAR|NM_001308043.1	+	201116103,201129728,201133028,201135971,201136197	201116481,201130146,201133134,201136107,201139877	0.960000
vagina_female_adult_53_years	chr1	168137486	168137500	168137486	-	High_confidence	2	2	8	0.357241	2.750000	chr1	168137391	168137473	LINE|L2|L2b	-	chr1	168079541	168137573	GPR161|NM_001267611.1	-	168079541,168087584,168090563,168096507,168104476,168137389	168085796,168087704,168090668,168097232,168104894,168137573	0.500000
vagina_female_adult_53_years	chr20	63953626	63953656	63953655	+	High_confidence	3	4	9	0.401896	2.947703	chr20	63953420	63953717	SINE|Alu|AluSq2	+	chr20	63953383	63956985	UCKL1-AS1|ENST00000623569.1	+	63953383	63956985	1.000000
vagina_female_adult_53_years	chr8	102261240	102261241	102261240	-	High_confidence	8	8	10	0.446551	3.121928	chr8	102261109	102261291	DNA|hAT-Ac|OldhAT1	+	chr8	102253945	102261986	UBR5|ENST00000517465.1	-	102253945,102257631,102258315,102258984,102261145,102261914	102254514,102257717,102258424,102259129,102261259,102261986	0.800000
vagina_female_adult_53_years	chr12	72562194	72562227	72562208	+	High_confidence	3	5	16	0.714481	3.625000	chr12	72562199	72562318	LINE|RTE-BovB|MamRTE1	+	chr12	72562851	72582520	TRHDE|ENST00000549401.5	+	72562851,72568567,72575254,72575486,72582226	72563040,72568656,72575388,72575542,72582520	0.687500
vagina_female_adult_53_years	chr14	39265944	39265955	39265954	+	High_confidence	5	6	19	0.848446	3.787144	chr14	39265902	39265967	LINE|RTE-BovB|MamRTE1	+	chr14	39265967	39350423	MIA2|ENST00000396165.8	+	39265967,39276933,39279336,39279448,39291018,39293270,39293999,39294924,39299863,39302128,39303477,39304290,39308448,39313339,39314738,39315682,39317943,39319208,39320927,39326863,39345903,39347712,39348742,39350097	39266527,39277065,39279358,39279537,39291096,39293381,39294071,39295029,39299986,39302249,39303524,39304381,39308587,39313441,39314799,39315718,39318011,39319291,39321056,39327022,39346026,39347771,39348977,39350423	1.000000
vagina_female_adult_53_years	chr7	105078775	105078790	105078775	+	RAMPAGE_only	2	2	9	0.401896	2.947703	chr7	105078688	105078807	SINE|Alu|AluJr	-	chr7	105063349	105101478	KMT2E|ENST00000622386.1	+	105063349,105063376,105063389,105066726,105073618,105074642,105076042,105076962,105077302,105078845,105081687,105090008,105090127,105091215,105101424	105063375,105063388,105063580,105066807,105073677,105074815,105076081,105077193,105077433,105078963,105081797,105090126,105090273,105091314,105101478	1.000000
vagina_female_adult_53_years	chr19	53874813	53874842	53874813	+	RAMPAGE_only	3	3	12	0.535861	3.277613	chr19	53874763	53874953	SINE|Alu|AluSx	-	chr19	53869405	53876435	MYADM|ENST00000391769.2	+	53869405,53869753,53873527	53869598,53869838,53876435	0.916667
vagina_female_adult_53_years	chr4	142474348	142474408	142474407	-	High_confidence	45	50	90	4.018956	4.988982	chr4	142473170	142475297	LINE|L1|L1PA14	+	chr4	142426480	142474408	INPP4B|ENST00000507861.5	-	142426480,142429172,142431168,142462662,142474225	142427477,142429217,142431385,142462726,142474408	0.933333
vagina_female_adult_53_years	chr19	9700610	9700620	9700619	-	High_confidence	5	5	9	0.401896	2.750000	chr19	9700547	9701126	LTR|ERV1|LTR10C	-	chr19	9690203	9700632	STRG.97393.2	-	9690203,9700387	9691269,9700632	0.666667
vagina_female_adult_53_years	chr2	46903621	46903632	46903621	-	RAMPAGE_only	4	4	10	0.446551	2.921928	chr2	46903353	46904869	LTR|ERVL-MaLR|THE1A-int	+	chr2	46901966	46915761	MCFD2|ENST00000649435.1	-	46901966,46907809,46909022,46915722	46905590,46907969,46909177,46915761	1.000000
vagina_female_adult_53_years	chr2	173532888	173532942	173532900	+	High_confidence	16	16	52	2.322063	5.339769	chr2	173527289	173533317	LINE|L1|L1PA3	-	chr2	173532976	173692758	STRG.15789.1	+	173532976,173692683	173533339,173692758	0.500000
vagina_female_adult_53_years	chr6	159231176	159231177	159231176	-	RAMPAGE_only	8	8	8	0.357241	2.500000	chr6	159231093	159231395	SINE|Alu|AluYb8	+	chr6	158775137	158788212	STRG.44408.4	-	158775137,158784643,158785308	158783666,158784727,158788212	1.000000
vagina_female_adult_53_years	chr4	184537536	184537554	184537536	-	High_confidence	1	1	8	0.357241	2.807355	chr4	184537190	184537727	LINE|L1|L1M6	+	chr4	184506459	184537554	LINC02427|ENST00000605270.5	-	184506459,184509236,184537501	184507376,184509325,184537554	0.500000
vagina_female_adult_53_years	chr2	95051753	95051792	95051772	+	RAMPAGE_only	8	9	21	0.937756	3.484184	chr2	95051735	95051869	LINE|CR1|L3	+	chr2	95047027	95053992	STRG.12605.5	+	95047027,95049580	95048126,95053992	0.952381
vagina_female_adult_53_years	chr3	3963451	3963476	3963461	-	High_confidence	7	9	20	0.893101	3.431624	chr3	3963076	3969110	LINE|L1|L1HS	+	chr3	3961623	3963275	STRG.19165.1	-	3961623,3963057	3961699,3963275	0.800000
vagina_female_adult_53_years	chr11	4129116	4129146	4129116	+	RAMPAGE_only	6	6	11	0.491206	3.095795	chr11	4129153	4129389	SINE|MIR|MIRb	+	chr11	4116242	4138875	RRM1|ENST00000533495.5	+	4116242,4118319,4119844,4121603,4122140,4123182,4126683,4127034,4129073,4132285,4133562,4135081,4138194	4116360,4118461,4119970,4121765,4122220,4123384,4126833,4127256,4129150,4132421,4133658,4135270,4138875	1.000000
vagina_female_adult_53_years	chr2	3536827	3536873	3536872	-	High_confidence	5	5	26	1.161032	4.418296	chr2	3536725	3537095	LTR|ERVL-MaLR|MLT1A	-	chr2	3531812	3536873	AC108488.1|ENST00000422961.5	-	3531812,3534112,3536723	3532310,3534255,3536873	0.769231
vagina_female_adult_53_years	chr16	87381508	87381515	87381508	-	RAMPAGE_only	5	5	9	0.401896	2.725481	chr16	87381385	87381577	SINE|MIR|MIRc	-	chr16	87327063	87383748	STRG.89885.1	-	87327063,87333885,87335303,87336154,87342876,87343597,87347173,87358410,87360294,87383404	87331510,87334286,87335457,87336264,87342951,87343765,87347250,87358497,87360366,87383748	0.555556
vagina_female_adult_53_years	chr2	177499695	177499729	177499695	+	RAMPAGE_only	9	10	31	1.384307	4.413716	chr2	177499736	177499772	LINE|CR1|L3	+	chr2	177434326	177559299	AGPS|ENST00000642466.1	+	177434326,177436763,177436979,177440964,177442406,177445545,177461892,177468415,177482058,177493147,177497688,177499617,177505505,177507969,177513818,177521268,177523747,177551362,177558751	177434417,177436884,177437054,177441036,177442486,177445626,177462018,177468524,177482186,177493199,177497765,177499730,177505575,177508031,177513908,177521368,177523805,177551582,177559299	0.870968
vagina_female_adult_53_years	chrX	107155879	107155964	107155879	-	RAMPAGE_only	11	11	40	1.786203	4.926428	chrX	107155767	107161785	LINE|L1|L1PA2	+	chrX	107124147	107154234	NUP62CL|ENST00000432145.5	-	107124147,107147742,107150855,107153171,107153453,107154095	107124332,107147809,107150967,107153306,107153503,107154234	0.650000
vagina_female_adult_53_years	chr19	42517033	42517073	42517072	-	RAMPAGE_only	4	4	11	0.491206	3.027169	chr19	42516941	42518139	LINE|L1|L1MB3	+	chr19	42507335	42519463	STRG.99013.5	-	42507335,42510888,42512349,42516772	42509228,42510920,42512479,42519463	1.000000
vagina_female_adult_53_years	chr13	32521923	32521924	32521923	-	High_confidence	5	7	7	0.312585	2.521641	chr13	32521693	32521992	SINE|Alu|AluSx1	+	chr13	32432830	32522275	N4BP2L2|ENST00000509076.1	-	32432830,32436360,32438651,32442387,32517856,32521372	32432972,32436405,32438737,32444124,32518003,32522275	0.857143
vagina_female_adult_53_years	chr7	105078721	105078736	105078735	+	RAMPAGE_only	4	4	9	0.401896	2.725481	chr7	105078688	105078807	SINE|Alu|AluJr	-	chr7	105063349	105101478	KMT2E|ENST00000622386.1	+	105063349,105063376,105063389,105066726,105073618,105074642,105076042,105076962,105077302,105078845,105081687,105090008,105090127,105091215,105101424	105063375,105063388,105063580,105066807,105073677,105074815,105076081,105077193,105077433,105078963,105081797,105090126,105090273,105091314,105101478	0.666667
vagina_female_adult_53_years	chr5	151037133	151037141	151037133	-	High_confidence	2	3	7	0.312585	2.521641	chr5	151037023	151037247	SINE|MIR|MIRc	-	chr5	151030483	151037438	TNIP1|ENST00000522574.5	-	151030483,151032286,151033607,151035001,151035581,151036789	151030747,151032383,151033799,151035067,151035707,151037438	1.000000
vagina_female_adult_53_years	chr21	38816701	38816720	38816719	+	High_confidence	7	7	12	0.535861	3.022055	chr21	38816611	38816723	LINE|L2|L2b	+	chr21	38816117	38824955	STRG.103489.3	+	38816117,38822673	38821704,38824955	1.000000
vagina_female_adult_53_years	chr9	5958509	5958529	5958527	-	High_confidence	5	8	14	0.625171	3.700440	chr9	5958523	5958620	SINE|Alu|FLAM_A	+	chr9	5957774	5958990	STRG.57026.2	-	5957774	5958990	0.785714
vagina_female_adult_53_years	chr3	57907996	57907997	57907996	+	RAMPAGE_only	4	4	7	0.312585	2.807355	chr3	57908044	57908279	SINE|MIR|MIRc	+	chr3	57912294	57916971	SLMAP|ENST00000476471.1	+	57912294,57913157,57916905	57912701,57913275,57916971	0.857143
vagina_female_adult_53_years	chr19	46203082	46203083	46203082	-	High_confidence	160	164	172	7.680671	5.476139	chr19	46202975	46203386	LTR|ERV1|LTR7C	-	chr19	46195777	46203083	IGFL2-AS1|ENST00000599817.5	-	46195777,46198407,46202839	46195838,46198442,46203083	0.709302
vagina_female_adult_53_years	chr3	52482654	52482660	52482654	+	RAMPAGE_only	2	2	8	0.357241	2.807355	chr3	52482568	52482694	DNA|TcMar-Tc2|Kanga1c	+	chr3	52455616	52493068	STRG.21382.2	+	52455616,52457842,52458661,52470858,52471813,52472302,52473733,52476446,52477573,52478096,52478448,52479748,52480183,52480878,52485777,52487195,52489335,52490074,52490704,52491351,52491871	52455734,52457926,52458844,52470907,52471977,52472398,52473829,52476599,52477642,52478282,52478577,52479862,52480295,52484637,52485827,52488605,52489678,52490231,52490833,52491513,52493068	0.875000
vagina_female_adult_53_years	chr8	123179113	123179136	123179113	+	High_confidence	6	6	14	0.625171	3.521641	chr8	123179159	123179521	LTR|ERVL-MaLR|MSTD	+	chr8	123179046	123210079	FAM83A|NM_207006.2	+	123179046,123182025,123191802,123194023,123207156,123209425	123180229,123183336,123191970,123194148,123207416,123210079	0.857143
vagina_female_adult_53_years	chr21	15928176	15928178	15928176	+	High_confidence	3	6	7	0.312585	2.521641	chr21	15927832	15928523	LTR|ERVL|LTR41C	-	chr21	15928295	15960634	STRG.102672.15	+	15928295,15960495	15928529,15960634	0.714286
vagina_female_adult_53_years	chr13	48492642	48492656	48492655	-	High_confidence	9	9	23	1.027067	4.142915	chr13	48492015	48493225	LINE|L2|L2a	+	chr13	48489896	48492573	RCBTB2|ENST00000462703.1	-	48489896,48491651,48492439	48490251,48491715,48492573	0.565217
vagina_female_adult_53_years	chr22	30971746	30971778	30971777	+	High_confidence	3	4	8	0.357241	3.000000	chr22	30971755	30972092	LINE|L2|L2c	+	chr22	30971438	30978722	TUG1|ENST00000643077.1	+	30971438,30972047,30972854,30975169	30971779,30972172,30973587,30978722	0.750000
vagina_female_adult_53_years	chr19	45524130	45524140	45524130	+	RAMPAGE_only	3	3	11	0.491206	3.095795	chr19	45524161	45524437	SINE|Alu|AluJo	+	chr19	45522555	45526332	VASP|ENST00000588482.5	+	45522555,45522717,45523643,45523840,45524096,45524569,45524877,45525945,45526139	45522581,45522818,45523695,45523877,45524142,45524660,45525077,45526003,45526332	0.909091
vagina_female_adult_53_years	chr9	92720662	92720746	92720745	-	RAMPAGE_only	10	11	61	2.723959	4.937908	chr9	92720689	92720791	DNA|TcMar-Tigger|Tigger19b	-	chr9	92711362	92764801	BICD2|NM_001003800.1	-	92711362,92717796,92718538,92720299,92722655,92729023,92764504	92715463,92717948,92719582,92720755,92722808,92729236,92764801	0.983607
vagina_female_adult_53_years	chr16	67571250	67571251	67571250	+	High_confidence	9	9	10	0.446551	2.725481	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.800000
vagina_female_adult_53_years	chr18	46087118	46087222	46087118	-	High_confidence	20	20	139	6.207054	5.625815	chr18	46087001	46087079	DNA|hAT-Ac|OldhAT1	-	chr18	46084426	46086584	ATP5F1A|ENST00000587902.1	-	46084426,46086112,46086386	46084654,46086257,46086584	0.604317
vagina_female_adult_53_years	chr10	45000453	45000515	45000503	+	High_confidence	16	17	88	3.929646	5.401256	chr10	45000467	45000650	SINE|MIR|MIRb	+	chr10	45000474	45005326	ZNF22|ENST00000298299.3	+	45000474,45003279	45000978,45005326	0.977273
vagina_female_adult_53_years	chr19	49086416	49086547	49086520	+	High_confidence	27	31	144	6.430329	5.672142	chr19	49086570	49086716	SINE|MIR|MIRc	+	chr19	49086523	49101668	SNRNP70|ENST00000599687.1	+	49086523,49090290,49090465,49098426,49098641,49101389	49086561,49090353,49090520,49098491,49098704,49101668	0.937500
vagina_female_adult_53_years	chr7	111413976	111414075	111413976	-	RAMPAGE_only	8	8	40	1.786203	4.525071	chr7	111413700	111414052	LTR|ERVL|LTR41C	+	chr7	111410943	111415739	STRG.49744.1	-	111410943	111415739	0.825000
vagina_female_adult_53_years	chr17	76014915	76014935	76014915	-	RAMPAGE_only	5	5	22	0.982411	4.201841	chr17	76014756	76014878	SINE|MIR|MIR	-	chr17	76011520	76012291	EVPL|ENST00000593037.1	-	76011520,76011771,76012005	76011668,76011882,76012291	0.727273
vagina_female_adult_53_years	chr7	2242922	2242923	2242922	+	High_confidence	29	29	37	1.652237	4.083275	chr7	2242638	2243393	LTR|ERV1|LTR1	-	chr7	2242904	2251145	NUDT1|NM_198954.1	+	2242904,2244562,2249856,2250828	2243048,2244726,2250002,2251145	0.945946
vagina_female_adult_53_years	chr11	17282813	17282825	17282813	+	RAMPAGE_only	3	3	9	0.401896	2.750000	chr11	17282797	17282939	SINE|MIR|MIRc	+	chr11	17277022	17301761	NUCB2|ENST00000533926.5	+	17277022,17282788,17295323,17296103,17301743	17277095,17282943,17295467,17296211,17301761	0.555556
vagina_female_adult_53_years	chr2	113121285	113121444	113121285	+	RAMPAGE_only	66	66	265	11.833592	6.662106	chr2	113121277	113121371	SINE|MIR|MIRb	+	chr2	113117892	113134016	IL1RN|ENST00000361779.7	+	113117892,113121447,113127688,113129575,113131044,113132655	113118028,113121618,113127740,113129664,113131157,113134016	0.539623
vagina_female_adult_53_years	chr19	6702632	6702650	6702632	-	High_confidence	7	7	13	0.580516	3.546594	chr19	6702615	6702750	SINE|Alu|AluSz	+	chr19	6697661	6702872	C3|ENST00000602053.1	-	6697661,6702126,6702470	6697794,6702212,6702872	0.923077
vagina_female_adult_53_years	chr16	23278251	23278276	23278251	+	High_confidence	4	4	17	0.759136	3.875000	chr16	23278204	23278287	LINE|L1|L1MB7	+	chr16	23278230	23352913	SCNN1B|ENST00000569789.1	+	23278230,23283736,23348591,23352800	23278340,23283804,23348910,23352913	0.647059
vagina_female_adult_53_years	chr16	87730860	87730881	87730865	-	High_confidence	4	4	10	0.446551	2.947703	chr16	87730840	87731046	LINE|L1|L1ME1	+	chr16	87707815	87730884	STRG.89895.3	-	87707815,87708349,87709264,87711234,87714497,87726764,87730551	87708075,87708466,87709667,87711443,87714573,87726924,87730884	0.700000
vagina_female_adult_53_years	chr2	229232047	229232054	229232053	-	High_confidence	6	6	12	0.535861	3.277613	chr2	229231843	229232141	LTR|ERVL-MaLR|MLT1A1	-	chr2	229025576	229232085	PID1|ENST00000354069.6	-	229025576,229155817,229231925	229026108,229155964,229232085	0.833333
vagina_female_adult_53_years	chr2	130912829	130912846	130912845	+	RAMPAGE_only	4	4	9	0.401896	3.000000	chr2	130912814	130913132	DNA|TcMar-Tigger|MER44A	+	chr2	130837454	130947230	ARHGEF4|ENST00000526381.2	+	130837454,130913985,130930951,130946508	130837701,130917498,130931257,130947230	0.888889
vagina_female_adult_53_years	chr22	45330253	45330254	45330253	+	High_confidence	4	4	7	0.312585	2.521641	chr22	45330209	45330322	SINE|Alu|FLAM_A	-	chr22	45330456	45336410	FAM118A|ENST00000487732.5	+	45330456,45332424,45335349,45336327	45330731,45332710,45335382,45336410	0.714286
vagina_female_adult_53_years	chr3	136991874	136991878	136991874	+	RAMPAGE_only	3	4	8	0.357241	2.807355	chr3	136991603	136991909	SINE|Alu|AluSx1	-	chr3	136980473	137011079	IL20RB|ENST00000475972.1	+	136980473,136982159,136986693,136989440,136991937,136995413,137010112	136980592,136982350,136986784,136989565,136992088,136995556,137011079	0.750000
vagina_female_adult_53_years	chrX	151971228	151971257	151971228	-	High_confidence	2	2	11	0.491206	2.721928	chrX	151971131	151971345	LINE|L1|L1ME3A	+	chrX	151953128	151970552	STRG.109696.2	-	151953128,151955367,151955707,151959838,151961282,151962422,151969668,151970184	151955084,151955567,151959149,151960172,151961365,151962643,151969736,151970552	0.636364
vagina_female_adult_53_years	chr12	10553364	10553365	10553364	+	High_confidence	71	79	90	4.018956	5.429554	chr12	10552971	10553515	LTR|ERV1|MER51A	+	chr12	10553362	10558049	LINC02446|ENST00000544591.1	+	10553362,10557335	10553516,10558049	0.888889
vagina_female_adult_53_years	chr1	33021454	33021458	33021454	-	RAMPAGE_only	19	24	35	1.562927	4.204582	chr1	33021377	33021433	LINE|Penelope|Penelope1_Vert	-	chr1	33010477	33036840	AK2|ENST00000548033.5	-	33010477,33013206,33014521,33021366,33021592,33036735	33010833,33013402,33014594,33021461,33021703,33036840	0.942857
vagina_female_adult_53_years	chr4	169697626	169697654	169697653	+	RAMPAGE_only	3	3	8	0.357241	3.000000	chr4	169697636	169697690	LINE|RTE-BovB|MamRTE1	+	chr4	169695630	169706888	CLCN3|ENST00000515420.1	+	169695630,169697188,169697360,169703997,169706867	169695692,169697279,169697734,169704184,169706888	0.750000
vagina_female_adult_53_years	chr1	209429061	209429127	209429061	+	High_confidence	15	16	61	2.723959	4.581461	chr1	209428997	209429295	SINE|Alu|AluJb	-	chr1	209429082	209430621	MIR205HG|ENST00000444286.1	+	209429082,209430424	209429408,209430621	0.819672
vagina_female_adult_53_years	chr21	46256892	46256939	46256892	-	High_confidence	8	9	22	0.982411	3.880180	chr21	46256825	46256866	LINE|RTE-BovB|MamRTE1	-	chr21	46251514	46256986	MCM3AP|ENST00000481113.1	-	46251514,46254391,46254775,46256788	46251682,46254526,46254844,46256986	0.545455
vagina_female_adult_53_years	chr11	47751379	47751380	47751379	-	RAMPAGE_only	8	8	8	0.357241	2.750000	chr11	47751373	47751591	DNA|hAT-Charlie|MER20	-	chr11	47731839	47767286	FNBP4|ENST00000534003.5	-	47731839,47734024,47736615,47743952,47746055,47750915,47751142,47752915,47754527,47765269,47767068	47732670,47734129,47736740,47744163,47746394,47751036,47751290,47753102,47754664,47765362,47767286	1.000000
vagina_female_adult_53_years	chr1	77169375	77169388	77169379	-	RAMPAGE_only	3	3	10	0.446551	2.725481	chr1	77169310	77169384	DNA|hAT-Ac|OldhAT1	-	chr1	77088989	77219426	PIGK|ENST00000370812.7	-	77088989,77122274,77154448,77161294,77161593,77163845,77166718,77169259,77206639,77210435,77219309	77092490,77122359,77154621,77161405,77161711,77163942,77166830,77169395,77206731,77210489,77219426	0.900000
vagina_female_adult_53_years	chr22	25457368	25457397	25457396	+	RAMPAGE_only	4	4	8	0.357241	2.750000	chr22	25457438	25457551	SINE|MIR|MIR1_Amn	+	chr22	25459975	25461668	CRYBB2P1|ENST00000609084.1	+	25459975	25461668	0.750000
vagina_female_adult_53_years	chr3	52644709	52644710	52644709	-	RAMPAGE_only	7	7	9	0.401896	2.750000	chr3	52644388	52644682	SINE|Alu|AluSc	-	chr3	52586429	52678567	PBRM1|ENST00000446103.5	-	52586429,52587352,52589069,52603520,52609312,52615350,52617261,52624896,52627272,52628893,52634601,52641953,52643247,52644703,52648343,52651741,52658198,52662132,52668497,52678499	52586688,52587510,52589252,52603732,52609955,52615456,52617538,52624941,52627370,52629035,52634815,52642045,52643343,52644789,52648442,52651810,52658315,52662276,52668645,52678567	0.888889
vagina_female_adult_53_years	chr12	115763030	115763031	115763030	-	High_confidence	10	10	15	0.669826	3.506891	chr12	115763026	115763144	LINE|L2|L2a	+	chr12	115762528	115762983	STRG.75611.1	-	115762528	115762983	0.600000
vagina_female_adult_53_years	chr1	153761485	153761486	153761485	+	RAMPAGE_only	10	10	12	0.535861	3.277613	chr1	153761228	153761533	SINE|Alu|AluSz6	+	chr1	153757636	153773319	INTS3|ENST00000503133.5	+	153757636,153761569,153762727,153763232,153763831,153764117,153764689,153764943,153767673,153768892,153769768,153770197,153770684,153771795,153772339,153772638,153772924,153773192	153757763,153761676,153762847,153763362,153763886,153764221,153764734,153765063,153767827,153768961,153769844,153770311,153770733,153771963,153772440,153772711,153773081,153773319	0.666667
vagina_female_adult_53_years	chr11	65438659	65439152	65439081	+	RAMPAGE_only	221	233	1684	75.199130	7.265837	chr11	65438390	65439384	LINE|L1|L1MB7	-	chr11	65423637	65445540	STRG.67745.5	+	65423637,65437228	65437184,65445540	0.998219
vagina_female_adult_53_years	chr3	50816069	50816119	50816069	+	RAMPAGE_only	9	11	35	1.562927	4.631293	chr3	50815749	50816183	LTR|ERV1|LTR54B	-	chr3	50675240	51384198	DOCK3|NM_004947.4	+	50675240,50778674,50841674,50890025,50933980,51064447,51075355,51089242,51090229,51146548,51159243,51160554,51208773,51214121,51225648,51227282,51227981,51228660,51229511,51236344,51237489,51246725,51260155,51270814,51275078,51277607,51280105,51310231,51312003,51312475,51312843,51314979,51330137,51333000,51333157,51338358,51338934,51341236,51348851,51350287,51354881,51356088,51356406,51356961,51357757,51357960,51360510,51361858,51362526,51374468,51375747,51380124,51381049	50675300,50778758,50841715,50890081,50934077,51064596,51075440,51089284,51090384,51146630,51159304,51160702,51208862,51214247,51225773,51227445,51228088,51228832,51229609,51236428,51237590,51246807,51260326,51271007,51275206,51277754,51280204,51310326,51312079,51312576,51312902,51315128,51330223,51333027,51333253,51338419,51339028,51341385,51348938,51350392,51355023,51356255,51356493,51357141,51357841,51358077,51360632,51361997,51362674,51374587,51375835,51380207,51384198	0.914286
vagina_female_adult_53_years	chr4	1241457	1241458	1241457	-	High_confidence	6	6	9	0.401896	2.947703	chr4	1241257	1241523	LINE|L1|X9_LINE	-	chr4	1235752	1241463	CTBP1|ENST00000515690.1	-	1235752,1238182,1241324	1236316,1238337,1241463	0.555556
vagina_female_adult_53_years	chr11	93499289	93499293	93499289	-	High_confidence	8	8	14	0.625171	3.521641	chr11	93499226	93499372	DNA|TcMar-Tigger|Tigger20a	+	chr11	93478471	93499351	SMCO4|ENST00000525141.1	-	93478471,93499275	93479284,93499351	1.000000
vagina_female_adult_53_years	chr4	158173024	158173025	158173024	-	High_confidence	26	28	31	1.384307	4.185230	chr4	158173000	158173088	LINE|CR1|CR1-L3A_Croc	+	chr4	158168353	158173046	FAM198B|ENST00000592057.1	-	158168353,158172867	158171599,158173046	0.870968
vagina_female_adult_53_years	chr2	171433135	171433148	171433147	-	High_confidence	11	11	27	1.205687	4.546594	chr2	171432769	171433357	DNA|TcMar-Tigger|MER6A	-	chr2	171339540	171433990	METTL8|ENST00000442541.1	-	171339540,171360421,171392042,171433025,171433882	171339554,171360513,171392197,171433219,171433990	0.666667
vagina_female_adult_53_years	chr11	65431118	65431375	65431195	+	RAMPAGE_only	25	25	457	20.407365	6.692815	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65423637	65445540	STRG.67745.5	+	65423637,65437228	65437184,65445540	1.000000
vagina_female_adult_53_years	chr5	176411400	176411402	176411400	-	RAMPAGE_only	4	6	9	0.401896	2.750000	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392641	176416261	CLTB|ENST00000508425.5	-	176392641,176397943,176410256,176416176	176392932,176398047,176410303,176416261	0.777778
vagina_female_adult_53_years	chr17	60887025	60887071	60887070	+	High_confidence	9	9	36	1.607582	4.815623	chr17	60881440	60887474	LINE|L1|L1PA2	-	chr17	60887049	61392830	BCAS3|ENST00000588874.5	+	60887049,60889694,60902619,60910531,60924406,60947218,60989970,61015750,61034665,61037888,61040791,61074919,61078332,61084466,61368326,61391976	60887211,60889771,60902703,60910702,60924500,60947352,60990235,61015901,61034790,61038054,61040892,61075020,61078529,61084564,61368494,61392830	0.972222
vagina_female_adult_53_years	chr10	63594814	63594826	63594825	+	RAMPAGE_only	6	6	11	0.491206	3.459432	chr10	63594868	63594990	SINE|MIR|MIR3	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	0.818182
vagina_female_adult_53_years	chr16	67571156	67571220	67571156	+	High_confidence	2	2	16	0.714481	3.500000	chr16	67571183	67571319	SINE|MIR|MIR1_Amn	+	chr16	67570777	67639164	CTCF|ENST00000643892.1	+	67570777,67571147,67610823,67611950,67616744,67620696,67621441,67626554,67628369,67629397,67635514,67636689,67637687	67570840,67571264,67611613,67612121,67616878,67620817,67621591,67626715,67628552,67629533,67635632,67636851,67639164	0.937500
vagina_female_adult_53_years	chr3	57267745	57267787	57267779	+	RAMPAGE_only	17	17	60	2.679304	4.823662	chr3	57267809	57268104	SINE|Alu|AluSz	+	chr3	57269565	57278127	LOC105377102|NR_135535.1	+	57269565,57276303,57277792	57269751,57276459,57278127	0.933333
vagina_female_adult_53_years	chr7	82894474	82894477	82894476	-	High_confidence	17	28	33	1.473617	4.476410	chr7	82894311	82894657	LTR|ERVL-MaLR|THE1B	-	chr7	82822096	82894454	PCLO|ENST00000426442.6	-	82822096,82824235,82826588,82827872,82838217,82841458,82845270,82846566,82847146,82879336,82894396	82822689,82824416,82826660,82827966,82838342,82841509,82845485,82846634,82847247,82879462,82894454	0.848485
vagina_female_adult_53_years	chr3	185609186	185609187	185609186	+	High_confidence	7	7	8	0.357241	2.521641	chr3	185609111	185609190	DNA|hAT-Charlie|MER102b	-	chr3	185609002	185613374	SENP2|ENST00000459883.5	+	185609002,185611650,185612606,185613344	185609350,185611745,185612658,185613374	0.750000
vagina_female_adult_53_years	chr7	92457378	92457419	92457418	+	RAMPAGE_only	8	11	29	1.294997	4.418157	chr7	92457181	92457482	SINE|Alu|AluSx	+	chr7	92447447	92459432	GATAD1|ENST00000287957.4	+	92447447,92448751,92450700,92454501,92456371	92447978,92448877,92450760,92454685,92459432	0.896552
vagina_female_adult_53_years	chr17	64764522	64764535	64764522	-	RAMPAGE_only	12	14	36	1.607582	4.334238	chr17	64764423	64764603	SINE|Alu|AluSx1	+	chr17	64761911	64762710	BPTFP1|ENST00000579209.1	-	64761911,64762354	64762047,64762710	0.944444
vagina_female_adult_53_years	chr10	110496244	110496258	110496244	-	High_confidence	4	5	12	0.535861	2.625815	chr10	110496171	110496447	LINE|L2|L2b	+	chr10	110475103	110496204	AL355512.1|ENST00000607952.1	-	110475103,110496118	110475226,110496204	1.000000
vagina_female_adult_53_years	chr5	119420545	119420577	119420576	+	RAMPAGE_only	3	3	7	0.312585	2.807355	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.714286
vagina_female_adult_53_years	chr16	27330147	27330148	27330147	+	RAMPAGE_only	9	9	13	0.580516	3.418296	chr16	27330107	27330416	SINE|Alu|AluSx1	+	chr16	27340203	27341200	IL4R|ENST00000628578.1	+	27340203,27341069	27340273,27341200	0.538462
vagina_female_adult_53_years	chr1	151017866	151017881	151017866	+	RAMPAGE_only	1	1	6	0.267930	2.584963	chr1	151017915	151018141	SINE|MIR|MIRc	+	chr1	151024741	151035711	PRUNE1|ENST00000368934.1	+	151024741,151025514,151027232,151033805	151024795,151025673,151027327,151035711	0.833333
vagina_female_adult_53_years	chr11	107441577	107441591	107441577	-	RAMPAGE_only	11	11	24	1.071722	4.001823	chr11	107441565	107441625	LINE|RTE-BovB|MamRTE1	-	chr11	107326359	107443031	CWF19L2|ENST00000431778.5	-	107326359,107329917,107334880,107336557,107345413,107348936,107353523,107390073,107392778,107416208,107418193,107428798,107433633,107439089,107441502,107442938	107327053,107330019,107334961,107336713,107345490,107349053,107353736,107390211,107392895,107416298,107418287,107429451,107433749,107439183,107441622,107443031	0.958333
vagina_female_adult_53_years	chr14	32075876	32075880	32075876	+	High_confidence	3	3	6	0.267930	2.584963	chr14	32075795	32075883	SINE|MIR|MIR3	+	chr14	32076113	32090780	ARHGAP5|ENST00000555814.1	+	32076113,32076457,32090501	32076217,32076657,32090780	0.833333
vagina_female_adult_53_years	chr5	42837773	42837774	42837773	-	RAMPAGE_only	5	6	7	0.312585	2.807355	chr5	42837646	42838115	LTR|ERVL-MaLR|MLT1F2	+	chr5	42800130	42825896	SELENOP|ENST00000506577.5	-	42800130,42804655,42806895,42808150,42825440	42801331,42804773,42807108,42808366,42825896	0.857143
vagina_female_adult_53_years	chr17	43508424	43508494	43508427	+	RAMPAGE_only	7	8	38	1.696892	4.326466	chr17	43508338	43508428	LINE|RTE-BovB|MamRTE1	+	chr17	43491193	43526796	DHX8|ENST00000587044.1	+	43491193,43492182,43492680,43493444,43493682,43496180,43498861,43499955,43504643,43507002,43507502,43507808,43508338,43513361,43517166,43520750,43521368,43522046,43526495	43491250,43492292,43493040,43493589,43493886,43496268,43498959,43500103,43504825,43507197,43507688,43508019,43508520,43513502,43520267,43520879,43521565,43522226,43526796	0.921053
vagina_female_adult_53_years	chr7	128638812	128638824	128638823	+	RAMPAGE_only	4	4	11	0.491206	2.845351	chr7	128638760	128639054	SINE|Alu|AluJr	-	chr7	128629837	128639638	STRG.50799.3	+	128629837,128638773	128631869,128639638	0.818182
vagina_female_adult_53_years	chr8	143281678	143281687	143281686	-	High_confidence	9	9	25	1.116377	3.907268	chr8	143281608	143281836	LTR|ERVL|LTR50	-	chr8	143280827	143281690	MINCR|ENST00000518073.1	-	143280827,143281481	143280997,143281690	0.600000
vagina_female_adult_53_years	chr4	86780457	86780472	86780471	+	RAMPAGE_only	4	5	11	0.491206	3.277613	chr4	86780459	86780984	LINE|L1|L1ME1	+	chr4	86770763	86815149	STRG.29132.6	+	86770763,86772777,86774372,86775170,86775441,86775596,86780401,86782200,86784464,86785230,86785847,86796873,86799100,86803708,86805278,86807559,86809768,86811045,86814455	86771535,86772958,86774531,86775342,86775459,86775652,86780472,86782262,86784558,86785368,86785936,86796929,86799204,86803857,86805369,86807897,86809984,86811108,86815149	1.000000
vagina_female_adult_53_years	chr2	182030832	182030855	182030851	+	High_confidence	2	2	9	0.401896	3.000000	chr2	182025225	182031239	LINE|L1|L1PA2	-	chr2	182030882	182117511	PPP1R1C|ENST00000479855.1	+	182030882,182061441,182063730,182117206	182030979,182061479,182063791,182117511	0.888889
vagina_female_adult_53_years	chr1	171251845	171251857	171251856	-	High_confidence	3	4	7	0.312585	2.807355	chr1	171251741	171251920	LTR|ERVK|LTR22B2	+	chr1	171247579	171251794	AL445673.1|ENST00000455124.2	-	171247579,171251522	171247723,171251794	0.571429
vagina_female_adult_53_years	chr11	62600168	62600250	62600241	-	High_confidence	10	10	33	1.473617	4.513795	chr11	62600155	62600287	LINE|L2|L2a	-	chr11	62598288	62600346	MTA2|ENST00000532239.1	-	62598288,62600165	62598639,62600346	0.606061
vagina_female_adult_53_years	chr5	126600248	126600249	126600248	+	High_confidence	11	11	13	0.580516	3.584963	chr5	126599795	126600372	LTR|ERV1|LTR10C	+	chr5	126600267	126627252	PHAX|ENST00000297540.4	+	126600267,126603569,126608363,126617249,126624574	126601058,126604183,126608484,126617333,126627252	0.923077
vagina_female_adult_53_years	chr3	189121289	189121332	189121294	+	RAMPAGE_only	14	14	41	1.830858	3.902078	chr3	189121239	189121645	LTR|ERVL-MaLR|MLT1J2	+	chr3	189120246	189127166	TPRG1|ENST00000479720.5	+	189120246,189121661,189123578,189127056	189120387,189121861,189123700,189127166	0.853659
vagina_female_adult_53_years	chr3	195688578	195688579	195688578	+	High_confidence	8	9	11	0.491206	3.277613	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688520	195708807	MUC20-OT1|ENST00000630417.2	+	195688520,195689338,195699029,195708133,195708746	195688797,195689438,195699207,195708435,195708807	0.545455
vagina_female_adult_53_years	chr1	21874172	21874194	21874193	-	RAMPAGE_only	4	4	8	0.357241	2.521641	chr1	21874115	21874327	SINE|MIR|MIRb	-	chr1	21822231	21937297	HSPG2|NM_005529.6	-	21822231,21823615,21824120,21824305,21824536,21824703,21827862,21828029,21828254,21828834,21829382,21829992,21830981,21831214,21831462,21831651,21832494,21833267,21833466,21833815,21834678,21835539,21836801,21838824,21839370,21839821,21841100,21841538,21842001,21842238,21842769,21843296,21844147,21846107,21846447,21847353,21847688,21847957,21848642,21848892,21850040,21850362,21851545,21851790,21852087,21852699,21852918,21854192,21854610,21854847,21855303,21855522,21855786,21857014,21857284,21859565,21859834,21860176,21861756,21861987,21864099,21864842,21865284,21865716,21872185,21872619,21872996,21873374,21873924,21874405,21874615,21874890,21875628,21875862,21876228,21876511,21878185,21878432,21878576,21878993,21880106,21880362,21880655,21881338,21884527,21884766,21885012,21885319,21887214,21887419,21887937,21889980,21890426,21890584,21895921,21896174,21937154	21823488,21823719,21824204,21824376,21824615,21824779,21827919,21828152,21828426,21829079,21829604,21830091,21831090,21831324,21831562,21831796,21832606,21833384,21833614,21833925,21834945,21835637,21837006,21839085,21839550,21840017,21841285,21841673,21842142,21842380,21842921,21843438,21844299,21846255,21846599,21847492,21847840,21848093,21848794,21849031,21850192,21850498,21851697,21851926,21852233,21852832,21853070,21854343,21854765,21854983,21855446,21855675,21855912,21857195,21857385,21859676,21860002,21860235,21861843,21862115,21864213,21865073,21865365,21865809,21872377,21872760,21873091,21873424,21874011,21874533,21874729,21875002,21875747,21876042,21876405,21876652,21878253,21878491,21878663,21879121,21880254,21880559,21880835,21881502,21884674,21884918,21885157,21885451,21887334,21887674,21888066,21890141,21890485,21890694,21895966,21896310,21937297	0.625000
vagina_female_adult_53_years	chr1	155679929	155679930	155679929	-	High_confidence	7	7	7	0.312585	2.807355	chr1	155679812	155679887	DNA|TcMar-Tigger|Tigger19a	-	chr1	155659441	155679829	YY1AP1|NM_001198899.1	-	155659441,155661306,155668626,155670319,155672559,155675009,155676547,155679408	155660913,155661423,155668777,155670464,155672731,155675096,155676746,155679829	1.000000
vagina_female_adult_53_years	chrX	71547308	71547317	71547316	+	RAMPAGE_only	2	3	7	0.312585	2.584963	chrX	71547285	71547497	DNA|hAT-Charlie|MER103C	-	chrX	71533127	71574655	STRG.107795.3	+	71533127,71536177,71537828,71544566,71554512,71555189,71555953,71556679,71556951,71557194,71557492,71559266,71559587,71561774,71562846,71563129,71563328,71564600,71567499,71567992,71573619	71533336,71536358,71538072,71548023,71554592,71555385,71556094,71556780,71557105,71557296,71557672,71559425,71559677,71561900,71563017,71563246,71563499,71564753,71567752,71568116,71574655	0.857143
vagina_female_adult_53_years	chr1	9874137	9874138	9874137	-	RAMPAGE_only	8	8	12	0.535861	3.277613	chr1	9874001	9874285	LINE|L2|L2a	+	chr1	9850658	9878176	CTNNBIP1|ENST00000377256.1	-	9850658,9871186,9871968,9877904,9878139	9850776,9871277,9872088,9877989,9878176	0.833333
vagina_female_adult_53_years	chr2	86482577	86482590	86482577	+	RAMPAGE_only	7	7	13	0.580516	3.546594	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86441460	86492716	KDM3A|ENST00000409064.5	+	86441460,86442017,86449806,86451102,86455084,86456441,86456804,86456982,86464052,86466371,86470203,86474775,86477876,86478169,86478607,86480166,86481929,86482457,86483986,86484941,86485728,86489317,86489519,86490880,86491140,86492038	86441488,86442233,86449962,86451213,86455187,86456566,86456877,86457071,86464216,86466883,86470408,86474990,86478029,86478265,86478735,86480362,86482102,86482694,86484158,86485029,86485859,86489437,86489659,86491057,86491275,86492716	0.923077
vagina_female_adult_53_years	chr4	4269605	4269614	4269609	-	High_confidence	17	17	46	2.054133	3.277928	chr4	4269023	4269689	LINE|L1|L1MD1	+	chr4	4267700	4268932	LYAR|ENST00000502917.1	-	4267700,4268529	4268023,4268932	0.956522
vagina_female_adult_53_years	chr7	11192977	11192981	11192977	+	RAMPAGE_only	4	4	8	0.357241	2.807355	chr7	11193018	11193694	LTR|ERV1|MER61-int	+	chr7	11197306	11384418	AC004160.1|ENST00000428533.5	+	11197306,11379286,11383796	11197444,11379369,11384418	0.875000
vagina_female_adult_53_years	chr12	874754	874758	874754	+	RAMPAGE_only	8	10	24	1.071722	3.795089	chr12	874673	874876	SINE|MIR|MIR	-	chr12	868567	911300	STRG.70510.11	+	868567,871264,881691,881910,882942,883394,883773,884120,884648,887220,889139,890452,894561,896070,897478,900475,907846,908474	869104,878361,881789,882073,883059,883568,883831,884243,886084,887304,889223,890513,894635,896732,897681,900670,908034,911300	0.958333
vagina_female_adult_53_years	chr9	68975842	68975855	68975842	-	High_confidence	9	10	24	1.071722	4.175736	chr9	68975591	68976039	LTR|ERVL-MaLR|MLT1C	-	chr9	68953087	68975841	LOC101927069|NR_110647.1	-	68953087,68957025,68975663	68954945,68957211,68975841	0.666667
vagina_female_adult_53_years	chr9	72616415	72616422	72616415	+	RAMPAGE_only	5	5	11	0.491206	3.321928	chr9	72616393	72616469	SINE|MIR|MIRb	+	chr9	72577787	72628344	TMC1|ENST00000497073.1	+	72577787,72578333,72616367,72627920	72578023,72578345,72616477,72628344	0.818182
vagina_female_adult_53_years	chr7	44829177	44829349	44829348	-	RAMPAGE_only	14	16	104	4.644127	5.335787	chr7	44829318	44829620	SINE|Alu|AluSq2	+	chr7	44826788	44831498	STRG.47000.1	-	44826788	44831498	0.971154
vagina_female_adult_53_years	chrX	147937490	147937543	147937542	+	RAMPAGE_only	2	2	12	0.535861	3.277613	chrX	147937547	147937625	DNA?|DNA?|UCON2	+	chrX	147940156	147943188	FMR1|ENST00000611273.1	+	147940156,147943130	147940662,147943188	0.500000
vagina_female_adult_53_years	chr2	96303166	96303280	96303166	-	RAMPAGE_only	50	50	224	10.002735	6.097993	chr2	96302454	96303153	LTR|ERVL|MER21B	-	chr2	96274335	96305515	SNRNP200|ENST00000323853.9	-	96274335,96275256,96276903,96277080,96277538,96277806,96278236,96278546,96278808,96279450,96281813,96283200,96283534,96283812,96284357,96285179,96286310,96286687,96287005,96287438,96287862,96288662,96289036,96289226,96289798,96290325,96290683,96291391,96291750,96292971,96293315,96295487,96296535,96296932,96297362,96297636,96298283,96298602,96298814,96299328,96300997,96301523,96303158,96304704,96305392	96275155,96275349,96276985,96277241,96277715,96277950,96278358,96278711,96278998,96279559,96281922,96283352,96283713,96284004,96284585,96285340,96286484,96286877,96287160,96287557,96287969,96288746,96289117,96289379,96289996,96290514,96290815,96291502,96291900,96293095,96293509,96295658,96296691,96297070,96297536,96297720,96298420,96298702,96298967,96299427,96301053,96301716,96303330,96304868,96305515	0.986607
vagina_female_adult_53_years	chr3	28347635	28347654	28347653	-	High_confidence	7	7	14	0.625171	3.392747	chr3	28347526	28347672	SINE|MIR|MIRc	-	chr3	28338545	28348477	AZI2|ENST00000415852.1	-	28338545,28340401,28348160	28338615,28340622,28348477	0.642857
vagina_female_adult_53_years	chr10	45594281	45594306	45594292	-	High_confidence	2	2	12	0.535861	3.277613	chr10	45594284	45594422	SINE|MIR|MIR3	-	chr10	45461386	45594491	MARCH8|ENST00000453980.3	-	45461386,45464238,45489366,45533109,45553111,45594234	45461411,45464327,45489417,45533289,45553204,45594491	0.750000
vagina_female_adult_53_years	chr3	50312710	50312763	50312747	-	High_confidence	3	3	13	0.580516	3.418296	chr3	50310594	50312964	Retroposon|SVA|SVA_D	-	chr3	50309703	50312784	STRG.21196.1	-	50309703,50312263	50309777,50312784	0.615385
vagina_female_adult_53_years	chr4	69859459	69859778	69859459	-	High_confidence	207	209	1018	45.458857	6.009390	chr4	69859295	69859439	LINE|L2|L2b	-	chr4	69849125	69860139	STRG.28559.6	-	69849125,69855300,69857499	69854314,69855426,69860139	1.000000
vagina_female_adult_53_years	chr10	77498913	77498961	77498925	-	High_confidence	3	3	16	0.714481	3.640224	chr10	77498859	77499086	SINE|MIR|MIR	+	chr10	77183472	77498970	KCNMA1|ENST00000640311.1	-	77183472,77184822,77251194,77403861,77493797,77498583	77183532,77184916,77251256,77404023,77493929,77498970	0.937500
vagina_female_adult_53_years	chr20	31566028	31566049	31566028	+	High_confidence	5	7	25	1.116377	3.943465	chr20	31566028	31566111	SINE|MIR|MIR3	+	chr20	31566056	31569252	HM13|ENST00000493364.1	+	31566056,31569119	31566295,31569252	0.800000
vagina_female_adult_53_years	chr9	4726557	4726610	4726557	-	RAMPAGE_only	2	2	11	0.491206	3.095795	chr9	4725911	4728263	DNA|TcMar-Tigger|Tigger1	-	chr9	4711154	4741318	STRG.56925.1	-	4711154,4718418,4719134,4722505,4726082,4740936	4713096,4718537,4719307,4722625,4727924,4741318	1.000000
vagina_female_adult_53_years	chr3	164450928	164450929	164450928	+	High_confidence	8	9	12	0.535861	2.663533	chr3	164449656	164452200	LINE|L1|L1PA15	-	chr3	164451462	164619698	STRG.25135.1	+	164451462,164608991,164619324	164451535,164609068,164619698	0.500000
vagina_female_adult_53_years	chr5	148094158	148094197	148094196	+	RAMPAGE_only	5	5	30	1.339652	4.208966	chr5	148094012	148094305	SINE|Alu|AluJo	+	chr5	148090927	148101428	SPINK5|ENST00000476608.1	+	148090927,148091164,148094353,148095817,148097866,148099233,148100453,148101354	148091045,148091228,148094481,148095905,148097994,148099315,148100581,148101428	0.800000
vagina_female_adult_53_years	chr3	56613403	56613429	56613428	+	RAMPAGE_only	2	2	6	0.267930	2.584963	chr3	56612103	56613539	LINE|L1|L1MA4A	-	chr3	56593711	56615417	CCDC66|ENST00000468108.1	+	56593711,56593943,56613588,56615127	56593741,56594028,56613750,56615417	1.000000
vagina_female_adult_53_years	chr15	41285330	41285331	41285330	+	RAMPAGE_only	5	5	8	0.357241	3.000000	chr15	41285320	41285686	LTR|ERV1|LTR7	-	chr15	41284004	41306534	OIP5-AS1|ENST00000500949.6	+	41284004,41285224,41286010,41298040	41284110,41285363,41286100,41306534	1.000000
vagina_female_adult_53_years	chr8	85378112	85378113	85378112	-	High_confidence	11	11	11	0.491206	3.277613	chr8	85377956	85378394	LTR|ERVL|MER74C	-	chr8	85328229	85378113	CA1|ENST00000523022.5	-	85328229,85329688,85332489,85333524,85336944,85338251,85341598,85378045	85328676,85329844,85332552,85333620,85337063,85338449,85341659,85378113	1.000000
vagina_female_adult_53_years	chr7	128622495	128622520	128622519	+	RAMPAGE_only	2	2	8	0.357241	2.750000	chr7	128622400	128622828	LTR|ERVL-MaLR|MLT1D	-	chr7	128574750	128626473	AC108010.1|ENST00000605862.5	+	128574750,128578889,128579998,128591849,128608117,128609486,128615859,128617867,128619045,128622478,128623574,128625796,128626294	128574791,128578933,128580094,128592017,128608213,128609579,128615970,128617977,128619177,128622694,128623781,128625855,128626473	1.000000
vagina_female_adult_53_years	chr11	77175226	77175303	77175302	+	High_confidence	12	12	39	1.741548	4.918781	chr11	77175157	77175329	SINE|MIR|MIR3	-	chr11	77175234	77182107	STRG.68443.1	+	77175234,77177548,77179044,77179734,77180373,77181379,77181950	77175464,77177643,77179129,77179953,77180481,77181589,77182107	0.923077
vagina_female_adult_53_years	chr14	100291506	100291507	100291506	-	RAMPAGE_only	6	6	6	0.267930	2.584963	chr14	100291489	100291554	SINE|MIR|MIR1_Amn	-	chr14	100291115	100296545	SLC25A29|ENST00000554912.1	-	100291115,100293293	100293032,100296545	0.833333
vagina_female_adult_53_years	chr20	10647510	10647522	10647510	-	High_confidence	3	3	6	0.267930	2.584963	chr20	10647482	10647671	DNA|hAT-Charlie|MER3	-	chr20	10645371	10647312	JAG1|ENST00000612857.1	-	10645371,10645970,10646938	10645469,10646084,10647312	0.500000
vagina_female_adult_53_years	chr6	43025307	43025315	43025307	+	High_confidence	6	6	20	0.893101	3.821928	chr6	43025340	43025645	SINE|Alu|AluSx	+	chr6	43026072	43033971	RRP36|ENST00000607394.1	+	43026072,43027129,43027359,43029091,43033852	43026141,43027252,43027477,43029190,43033971	1.000000
vagina_female_adult_53_years	chr10	133369958	133369964	133369963	-	RAMPAGE_only	4	4	10	0.446551	2.921928	chr10	133369949	133370046	SINE|tRNA|LFSINE_Vert	-	chr10	133362482	133373404	ECHS1|NM_004092.3	-	133362482,133364657,133365975,133366888,133368922,133369903,133370559,133373245	133362933,133364725,133366095,133366993,133369022,133370031,133370757,133373404	1.000000
vagina_female_adult_53_years	chr3	108165449	108165466	108165449	-	RAMPAGE_only	3	3	8	0.357241	3.000000	chr3	108165378	108165542	DNA|hAT-Ac|OldhAT1	+	chr3	108160811	108222570	IFT57|NM_018010.3	-	108160811,108163662,108165430,108166853,108167792,108191520,108206627,108213930,108218534,108219409,108222110	108162655,108163729,108165493,108166985,108167864,108191643,108206696,108214021,108218653,108219572,108222570	0.750000
vagina_female_adult_53_years	chr6	44248347	44248398	44248347	+	High_confidence	4	4	22	0.982411	3.621928	chr6	44248324	44248379	DNA|hAT-Charlie|MER5A1	-	chr6	44247865	44253883	HSP90AB1|ENST00000371554.2	+	44247865,44248629,44249376,44249674,44250020,44250290,44251047,44251417,44251736,44251998,44253044,44253488	44248079,44248776,44249583,44249834,44250154,44250599,44251213,44251608,44251884,44252267,44253378,44253883	0.818182
vagina_female_adult_53_years	chr14	77710866	77710890	77710889	+	High_confidence	9	16	36	1.607582	3.314536	chr14	77710914	77711213	LINE|L1|L1MA1	+	chr14	77710643	77717584	SLIRP|ENST00000556956.1	+	77710643,77715771,77717495	77710896,77715879,77717584	0.944444
vagina_female_adult_53_years	chr6	56636816	56636834	56636821	-	RAMPAGE_only	7	8	21	0.937756	4.247928	chr6	56636799	56637113	SINE|Alu|AluSq2	+	chr6	56603836	56642788	DST|ENST00000439203.5	-	56603836,56610426,56611507,56614355,56624529,56625156,56627203,56627998,56629249,56630244,56631210,56631882,56632853,56634131,56634461,56634800,56635588,56636556,56639258,56639449,56639695,56639928,56640142,56641946,56642409,56642621	56609344,56610562,56611596,56614484,56624628,56625264,56627287,56628161,56629443,56630383,56631389,56632040,56633037,56634258,56634616,56634953,56635714,56636652,56639363,56639611,56639773,56640057,56640605,56642101,56642503,56642788	0.761905
vagina_female_adult_53_years	chr12	19397915	19397916	19397915	+	RAMPAGE_only	6	6	9	0.401896	2.503258	chr12	19397954	19398081	SINE|Alu|AluSz	+	chr12	19404044	19493829	AEBP2|ENST00000538425.5	+	19404044,19462509,19473247,19493799	19404216,19462717,19473355,19493829	0.777778
vagina_female_adult_53_years	chr2	109546077	109546121	109546077	-	RAMPAGE_only	4	4	20	0.893101	4.037401	chr2	109545815	109546035	LINE|L2|L2a	-	chr2	109542796	109613657	SEPT10|NM_001321515.1	-	109542796,109546049,109553086,109564365,109565762,109567814,109574580,109585125,109585720,109613111	109544324,109546237,109553219,109564534,109565859,109567976,109574767,109585321,109585838,109613657	0.950000
vagina_female_adult_53_years	chr19	282777	282794	282777	-	RAMPAGE_only	10	10	16	0.714481	3.189898	chr19	282643	282733	SINE|MIR|MIR1_Amn	-	chr19	281045	288537	PLPP2|ENST00000621795.1	-	281045,282133,282751	281537,282310,288537	0.937500
vagina_female_adult_53_years	chr1	16951007	16951035	16951007	+	RAMPAGE_only	1	1	7	0.312585	2.584963	chr1	16950976	16951061	DNA|hAT-Ac|OldhAT1	+	chr1	16953156	16954781	CROCC|ENST00000497654.2	+	16953156,16954222,16954733	16953481,16954357,16954781	0.714286
vagina_female_adult_53_years	chr2	199955964	199955990	199955964	+	High_confidence	2	2	11	0.491206	3.277613	chr2	199955996	199956125	LINE|L1|L1MDb	+	chr2	199955820	200008540	MAIP1|ENST00000435773.2	+	199955820,199959267,199959753,200005742,200008465	199956248,199959339,199959880,200005777,200008540	0.909091
vagina_female_adult_53_years	chr7	128648784	128648812	128648789	+	RAMPAGE_only	2	2	8	0.357241	2.521641	chr7	128648764	128648951	SINE|Alu|AluJb	-	chr7	128641240	128660998	LINC01000|NR_024368.1	+	128641240,128642216,128648791,128651037,128651188	128641379,128642281,128648982,128651095,128660998	0.500000
vagina_female_adult_53_years	chr16	20674404	20674408	20674404	+	High_confidence	8	8	19	0.848446	3.350209	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.894737
vagina_female_adult_53_years	chr5	109383417	109383498	109383459	-	High_confidence	8	8	54	2.411374	4.726059	chr5	109383161	109383644	DNA|hAT-Charlie|Charlie7	+	chr5	109334712	109383433	PJA2|ENST00000361557.4	-	109334712,109344189,109344704,109355914,109362839,109368560,109378203,109381502,109383402	109337356,109344311,109344819,109356026,109363022,109368746,109379254,109381703,109383433	0.907407
vagina_female_adult_53_years	chr7	82214040	82214042	82214040	-	RAMPAGE_only	3	8	9	0.401896	2.500000	chr7	82213847	82214213	LTR|ERVL-MaLR|MLT1A0	-	chr7	82117043	82343236	CACNA2D1|ENST00000484706.1	-	82117043,82136634,82170549,82335134,82343053	82117173,82136676,82170609,82335251,82343236	0.888889
vagina_female_adult_53_years	chr4	128570480	128570488	128570480	-	High_confidence	3	3	7	0.312585	2.584963	chr4	128570223	128570703	LTR|ERVL|LTR16D	+	chr4	128567971	128570531	AC078850.1|ENST00000514265.1	-	128567971,128570224	128569287,128570531	0.857143
vagina_female_adult_53_years	chr19	48596900	48596914	48596913	+	RAMPAGE_only	6	6	12	0.535861	3.251629	chr19	48596922	48597093	SINE|MIR|MIR	+	chr19	48595785	48599423	SULT2B1|ENST00000597923.1	+	48595785,48599134	48596919,48599423	1.000000
vagina_female_adult_53_years	chr16	57079599	57079624	57079623	+	High_confidence	4	5	8	0.357241	2.750000	chr16	57079618	57079877	SINE|MIR|MIRc	+	chr16	57079220	57082633	STRG.88720.1	+	57079220,57079545,57081097,57081526,57082416	57079292,57079629,57081181,57081610,57082633	0.750000
vagina_female_adult_53_years	chrX	53585017	53585163	53585017	-	RAMPAGE_only	16	16	187	8.350497	5.675358	chrX	53584800	53584995	DNA|hAT-Charlie|MER30	-	chrX	53533003	53608041	STRG.107058.3	-	53533003,53534006,53534515,53535383,53536146,53536379,53537555,53538336,53538834,53539656,53542442,53543885,53544559,53545028,53546435,53546703,53547672,53548958,53550665,53550900,53551265,53552310,53552637,53554632,53557381,53558654,53558970,53559353,53560187,53561755,53562110,53562830,53563745,53564573,53565066,53568691,53569615,53573749,53575154,53575642,53576899,53580830,53583557,53584185,53585011,53586489,53586781,53588381,53589546,53590403,53590999,53592397,53593363,53594498,53600117,53602563,53603367,53604588,53607522	53533411,53534197,53534697,53535501,53536252,53536667,53537696,53538454,53539080,53539812,53542539,53543968,53544762,53545161,53546592,53546825,53548273,53549505,53550768,53551189,53551480,53552441,53552893,53554920,53557427,53558809,53559060,53559532,53560416,53561924,53562244,53562929,53563821,53564722,53565239,53568874,53569827,53573964,53575221,53575785,53577067,53581026,53583916,53584345,53585188,53586571,53586909,53588534,53589816,53590499,53591122,53592628,53593601,53595403,53600309,53602658,53603501,53604834,53608041	0.973262
vagina_female_adult_53_years	chr3	39407629	39407683	39407682	+	High_confidence	120	134	497	22.193568	5.534843	chr3	39407659	39407689	LTR|ERV1|LTR6A	-	chr3	39408203	39412438	RPSA|ENST00000478027.2	+	39408203,39410753,39411648,39411895,39412273	39408724,39410999,39411777,39412061,39412438	0.957746
vagina_female_adult_53_years	chr5	141581000	141581016	141581015	-	High_confidence	3	3	8	0.357241	2.807355	chr5	141580954	141581406	LTR|ERVL-MaLR|MLT1C	+	chr5	141570391	141581970	STRG.36539.3	-	141570391,141573491,141574966,141576229,141576755,141577474,141578224,141578514,141579087,141580743	141572040,141574208,141575146,141576294,141576871,141577591,141578343,141578625,141579196,141581970	0.750000
vagina_female_adult_53_years	chr6	56785867	56785868	56785867	-	High_confidence	9	10	10	0.446551	2.947703	chr6	56779724	56785868	LINE|L1|L1PA3	-	chr6	56670674	56785879	DST|ENST00000522538.5	-	56670674,56699652,56701887,56704279,56735227,56785770	56670807,56699745,56701965,56704369,56735289,56785879	0.600000
vagina_female_adult_53_years	chr5	96746254	96746274	96746273	+	RAMPAGE_only	5	5	9	0.401896	2.500000	chr5	96746196	96746292	SINE|MIR|MIRc	-	chr5	96743672	96748717	CAST|ENST00000512191.1	+	96743672,96746341,96747344,96748517	96743746,96746425,96747392,96748717	0.555556
vagina_female_adult_53_years	chr1	243340766	243340777	243340776	+	RAMPAGE_only	5	5	9	0.401896	2.725481	chr1	243340555	243340808	LTR|ERV1|LTR78	-	chr1	243338752	243415829	SDCCAG8|ENST00000493334.1	+	243338752,243341038,243344214,243378720,243415701	243338940,243341173,243344331,243378863,243415829	0.888889
vagina_female_adult_53_years	chr2	182928788	182928853	182928788	-	RAMPAGE_only	7	7	42	1.875513	4.663231	chr2	182928620	182928757	SINE|MIR|MIR3	-	chr2	182925656	182927265	NCKAP1|ENST00000477988.1	-	182925656,182926815	182925818,182927265	0.642857
vagina_female_adult_53_years	chr2	180692008	180692009	180692008	+	High_confidence	66	66	67	2.991889	4.667215	chr2	180691204	180692425	LTR|ERV1|LTR12C	+	chr2	180692021	180724649	STRG.16259.1	+	180692021,180724595	180692441,180724649	0.850746
vagina_female_adult_53_years	chr12	119179296	119179315	119179296	+	High_confidence	3	3	10	0.446551	2.721928	chr12	119179222	119179304	SINE|MIR|MIR3	+	chr12	119178789	119194746	HSPB8|NM_014365.2	+	119178789,119187024,119193698	119179679,119187088,119194746	1.000000
vagina_female_adult_53_years	chr6	56637006	56637007	56637006	-	RAMPAGE_only	6	6	8	0.357241	2.807355	chr6	56636799	56637113	SINE|Alu|AluSq2	+	chr6	56603836	56642788	DST|ENST00000439203.5	-	56603836,56610426,56611507,56614355,56624529,56625156,56627203,56627998,56629249,56630244,56631210,56631882,56632853,56634131,56634461,56634800,56635588,56636556,56639258,56639449,56639695,56639928,56640142,56641946,56642409,56642621	56609344,56610562,56611596,56614484,56624628,56625264,56627287,56628161,56629443,56630383,56631389,56632040,56633037,56634258,56634616,56634953,56635714,56636652,56639363,56639611,56639773,56640057,56640605,56642101,56642503,56642788	0.500000
vagina_female_adult_53_years	chr3	195688656	195688689	195688688	+	High_confidence	5	6	12	0.535861	3.095795	chr3	195688592	195688793	LINE|L1|L1ME2	+	chr3	195688681	195708807	MUC20-OT1|ENST00000627562.2	+	195688681,195689338,195699029,195701379,195708133	195688797,195689438,195699207,195701495,195708807	0.750000
vagina_female_adult_53_years	chr9	128127441	128127462	128127441	-	High_confidence	3	3	11	0.491206	2.646439	chr9	128127245	128127401	SINE|MIR|MIRc	-	chr9	128122447	128127675	PTGES2|ENST00000474124.5	-	128122447,128122933,128123701,128124491,128125243,128127438	128122479,128123134,128123847,128124550,128125441,128127675	0.818182
vagina_female_adult_53_years	chr3	47105998	47106015	47105998	-	RAMPAGE_only	2	2	6	0.267930	2.584963	chr3	47105925	47105951	LINE|L1|L1ME4b	-	chr3	47088183	47098451	SETD2|ENST00000484689.1	-	47088183,47097954	47088247,47098451	0.833333
vagina_female_adult_53_years	chr1	235589035	235589065	235589035	-	High_confidence	2	2	7	0.312585	2.521641	chr1	235589032	235589593	LTR|ERVL|LTR18B	+	chr1	235551753	235588959	GNG4|ENST00000484517.2	-	235551753,235583739,235588868	235552237,235583848,235588959	0.714286
vagina_female_adult_53_years	chr3	15657883	15657884	15657883	+	RAMPAGE_only	26	27	27	1.205687	3.353534	chr3	15657885	15658196	SINE|Alu|AluSz	+	chr3	15738514	15738809	RN7SL4P|ENST00000584058.2	+	15738514	15738809	0.962963
vagina_female_adult_53_years	chr12	75502206	75502217	75502206	-	RAMPAGE_only	3	3	7	0.312585	2.807355	chr12	75502125	75502278	LINE|L2|L2c	-	chr12	75499829	75504282	KRR1|ENST00000551070.5	-	75499829,75501722,75501922,75503903	75499951,75501816,75502000,75504282	1.000000
vagina_female_adult_53_years	chr11	65181205	65181255	65181232	+	High_confidence	3	3	14	0.625171	2.896292	chr11	65181116	65181242	SINE|MIR|MIR3	-	chr11	65181214	65212006	CAPN1|NM_001198868.1	+	65181214,65182700,65183127,65183473,65185916,65186169,65187214,65187954,65188413,65188585,65204682,65205709,65206462,65206779,65208054,65208204,65209322,65209848,65210017,65210335,65210813,65211259	65181410,65182968,65183197,65183592,65186050,65186338,65187298,65188040,65188488,65188746,65204858,65205721,65206674,65206819,65208120,65208262,65209387,65209917,65210096,65210452,65210872,65212006	1.000000
vagina_female_adult_53_years	chr7	11194708	11194730	11194708	+	High_confidence	5	5	11	0.491206	3.277613	chr7	11193735	11197496	LTR|ERV1|MER61-int	+	chr7	11194705	11244479	AC004160.1|ENST00000627042.2	+	11194705,11197309,11240536,11244257	11194784,11197444,11240731,11244479	0.545455
vagina_female_adult_53_years	chr7	158863389	158863409	158863408	+	RAMPAGE_only	5	5	14	0.625171	3.182006	chr7	158863424	158863466	SINE|Alu|AluJr	+	chr7	158869445	158871499	WDR60|ENST00000397143.3	+	158869445,158869854,158871141	158869490,158869908,158871499	0.857143
vagina_female_adult_53_years	chr19	10564933	10564938	10564937	-	RAMPAGE_only	5	5	9	0.401896	3.000000	chr19	10564755	10564893	SINE|MIR|MIRb	-	chr19	10553575	10565971	KRI1|ENST00000478863.5	-	10553575,10555086,10555284,10557551,10557971,10558163,10559358,10559612,10559809,10560311,10561002,10561168,10561666,10561790,10562728,10564928,10565716,10565905	10554281,10555185,10555349,10557895,10558060,10558239,10559529,10559708,10559936,10560448,10561080,10561265,10561716,10561845,10562837,10565034,10565790,10565971	0.888889
vagina_female_adult_53_years	chr20	46070209	46070244	46070209	-	RAMPAGE_only	3	3	12	0.535861	3.095795	chr20	46070041	46070172	LINE|L2|L2c	-	chr20	46060984	46089941	NCOA5|NM_020967.2	-	46060984,46063359,46065028,46067054,46068501,46070209,46079386,46089816	46062889,46063680,46065228,46067181,46068638,46070536,46079453,46089941	0.750000
vagina_female_adult_53_years	chr20	37509345	37509373	37509345	-	High_confidence	2	2	7	0.312585	2.521641	chr20	37509297	37509419	SINE|MIR|MIR3	-	chr20	37499892	37510150	STRG.101682.1	-	37499892,37509103	37502554,37510150	0.571429
vagina_female_adult_53_years	chr16	8842153	8842179	8842153	+	High_confidence	15	15	32	1.428962	3.939572	chr16	8842113	8843831	LTR|ERV1|HERVH-int	-	chr16	8842206	8848119	PMM2|ENST00000562025.1	+	8842206,8847723	8842379,8848119	0.906250
vagina_female_adult_53_years	chr17	32479853	32479869	32479853	+	High_confidence	4	4	16	0.714481	3.323231	chr17	32479777	32479899	LINE|CR1|X6B_LINE	-	chr17	32480077	32480962	PSMD11|ENST00000469475.1	+	32480077,32480488,32480752	32480197,32480631,32480962	0.812500
vagina_female_adult_53_years	chr14	44912580	44912629	44912628	-	High_confidence	4	5	13	0.580516	3.418296	chr14	44911977	44913192	LTR|ERV1|LTR12C	+	chr14	44898907	44911917	LOC101927418|NR_110050.1	-	44898907,44899229,44911756	44899076,44899313,44911917	0.615385
vagina_female_adult_53_years	chr21	13875411	13875412	13875411	-	RAMPAGE_only	13	13	13	0.580516	3.392747	chr21	13875254	13876076	LTR|ERVL-MaLR|MSTA-int	-	chr21	13874673	13876513	STRG.102480.2	-	13874673	13876513	0.923077
vagina_female_adult_53_years	chr17	771329	771444	771443	-	High_confidence	5	5	33	1.473617	4.536670	chr17	771436	771586	LINE|L1|L1ME4a	+	chr17	760072	771404	GLOD4|ENST00000573137.1	-	760072,769868,770043,771324	760238,769955,770157,771404	0.878788
vagina_female_adult_53_years	chr5	119420650	119420651	119420650	+	RAMPAGE_only	7	7	10	0.446551	2.725481	chr5	119419807	119421273	LTR|ERVL-MaLR|THE1B-int	+	chr5	119452442	119542335	HSD17B4|NM_001292027.1	+	119452442,119456314,119471635,119473907,119474400,119475705,119475823,119477416,119478833,119489191,119492099,119493817,119496542,119499316,119502040,119506817,119509140,119514980,119525215,119525916,119527132,119529893,119531265,119536422,119541904	119452633,119456368,119471700,119474015,119474460,119475727,119475870,119477501,119479021,119489283,119492124,119493946,119496646,119499553,119502092,119506889,119509244,119515046,119525285,119526023,119527219,119529980,119531404,119536550,119542335	0.800000
vagina_female_adult_53_years	chr12	92799184	92799190	92799184	-	RAMPAGE_only	5	5	9	0.401896	2.725481	chr12	92799177	92799303	LINE|L2|L2a	-	chr12	92770636	92929331	EEA1|ENST00000322349.12	-	92770636,92776843,92777542,92777940,92779114,92780279,92781949,92787866,92798891,92801599,92802403,92809016,92811278,92812979,92816199,92819307,92826165,92827911,92832511,92842464,92851110,92852174,92852911,92853914,92857274,92857430,92864859,92891628,92929042	92776133,92776942,92777663,92778179,92779300,92780411,92782135,92788049,92799086,92801701,92802734,92809156,92811434,92813093,92816400,92819511,92826285,92828061,92832850,92842581,92851266,92852296,92853025,92853954,92857340,92857485,92864987,92891721,92929331	1.000000
vagina_female_adult_53_years	chr1	171527608	171527617	171527616	+	RAMPAGE_only	3	3	11	0.491206	2.721928	chr1	171527479	171527767	SINE|Alu|AluSz6	+	chr1	171512031	171593511	PRRC2C|ENST00000426496.6	+	171512031,171513000,171514535,171515733,171517590,171522176,171523220,171523434,171524820,171527790,171532342,171535427,171536028,171537262,171539970,171545478,171550085,171557239,171561017,171566232,171566591,171568246,171571319,171574926,171577433,171579353,171579827,171583955,171584418,171587002,171587647,171588378,171591586	171512200,171513172,171514645,171515859,171517814,171522259,171523354,171523522,171524965,171527844,171532961,171535597,171536278,171537473,171542229,171545687,171550240,171558143,171561103,171566421,171566843,171568339,171571421,171575128,171577637,171579466,171579964,171584187,171584526,171587221,171587751,171588505,171593511	0.818182
vagina_female_adult_53_years	chr9	734635	734641	734635	+	High_confidence	2	2	6	0.267930	2.584963	chr9	734389	734675	SINE|Alu|AluSx	+	chr9	734747	746104	KANK1|ENST00000382286.2	+	734747,738284,740791,742204,744490	734835,738504,740934,742405,746104	0.833333
vagina_female_adult_53_years	chr18	47920091	47920106	47920091	-	RAMPAGE_only	6	6	11	0.491206	3.121928	chr18	47919993	47920302	LTR|ERVL-MaLR|MLT1A0	-	chr18	47870474	47923642	SMAD2|ENST00000585978.1	-	47870474,47896520,47920071,47922546,47923565	47870564,47896809,47920169,47922655,47923642	0.818182
vagina_female_adult_53_years	chr14	49789498	49789513	49789498	-	RAMPAGE_only	7	7	19	0.848446	3.947703	chr14	49789398	49789451	LINE|L2|L2a	-	chr14	49784904	49787174	NEMF|ENST00000554275.1	-	49784904,49786717	49785320,49787174	0.631579
vagina_female_adult_53_years	chr4	143380634	143380635	143380634	+	RAMPAGE_only	13	13	13	0.580516	3.546594	chr4	143380590	143380720	SINE|Alu|FLAM_C	-	chr4	143381944	143469567	GAB1|ENST00000505913.5	+	143381944,143415476,143433490,143437998,143439801,143440078,143459384,143460363,143466102,143469030	143382030,143415771,143433716,143438600,143439887,143440382,143459478,143460487,143466225,143469567	0.538462
vagina_female_adult_53_years	chr16	20736862	20736883	20736879	-	RAMPAGE_only	3	3	12	0.535861	3.277613	chr16	20734835	20736858	DNA|hAT-Charlie|Charlie6	-	chr16	20735374	20741796	THUMPD1|ENST00000396083.6	-	20735374,20737707,20738896,20741508	20737286,20737956,20739071,20741796	0.916667
vagina_female_adult_53_years	chr5	39124253	39124254	39124253	-	High_confidence	5	5	7	0.312585	2.521641	chr5	39124110	39124208	SINE|MIR|MIRc	-	chr5	39107057	39124317	FYB1|ENST00000647313.1	-	39107057,39108230,39110355,39118873,39119534,39122335,39124252	39107465,39108262,39110389,39119036,39119634,39122402,39124317	0.857143
vagina_female_adult_53_years	chr4	69841431	69841481	69841480	-	RAMPAGE_only	3	3	16	0.714481	3.640224	chr4	69841433	69841617	SINE|Alu|AluJo	+	chr4	69821291	69860139	STRG.28559.5	-	69821291,69844160,69847697,69855300,69857499	69842106,69844341,69854314,69855426,69860139	0.937500
vagina_female_adult_53_years	chr4	79086177	79086180	79086177	+	High_confidence	5	6	9	0.401896	2.750000	chr4	79086095	79086277	LTR|ERVL|LTR79	-	chr4	79085238	79308653	LINC01088|ENST00000513153.5	+	79085238,79086095,79306690,79308272	79085347,79086262,79306728,79308653	0.555556
vagina_female_adult_53_years	chr1	60640093	60640125	60640124	-	High_confidence	6	6	19	0.848446	3.683542	chr1	60640012	60646037	LINE|L1|L1PA2	+	chr1	60540248	60640491	LINC01748|ENST00000439156.2	-	60540248,60542296,60573337,60588036,60595537,60600126,60640010,60640271	60540433,60542411,60573413,60588162,60596373,60600250,60640126,60640491	0.631579
vagina_female_adult_53_years	chr15	52100532	52100544	52100543	-	High_confidence	6	7	20	0.893101	3.984184	chr15	52100279	52100861	LTR|ERVL|MER73	-	chr15	52056674	52100523	AC023906.5|ENST00000558607.1	-	52056674,52100469	52057255,52100523	0.950000
vagina_female_adult_53_years	chr18	9593948	9593982	9593961	-	RAMPAGE_only	2	2	10	0.446551	2.947703	chr18	9593938	9594229	SINE|Alu|AluJb	-	chr18	9577063	9595061	PPP4R1|ENST00000580583.5	-	9577063,9584514,9584720,9588088,9588710,9593767,9595017	9577191,9584580,9584828,9588235,9588853,9593874,9595061	0.600000
vagina_female_adult_53_years	chr3	197541165	197541207	197541172	-	High_confidence	8	8	32	1.428962	3.800182	chr3	197541160	197541315	DNA|hAT-Charlie|MER5A	-	chr3	197540447	197541790	STRG.26444.1	-	197540447	197541790	0.937500
vagina_female_adult_53_years	chr16	11774394	11774420	11774394	-	High_confidence	2	3	8	0.357241	2.750000	chr16	11774317	11774371	LINE|L1|L1M6B	-	chr16	11765516	11774292	ZC3H7A|ENST00000575041.5	-	11765516,11767416,11768314,11770782,11774235	11765685,11767578,11768501,11770987,11774292	1.000000
vagina_female_adult_53_years	chr17	40496722	40496724	40496722	-	RAMPAGE_only	3	6	6	0.267930	2.584963	chr17	40496611	40496803	SINE|MIR|MIR	+	chr17	40475827	40501597	TNS4|ENST00000254051.10	-	40475827,40478306,40478579,40479673,40480699,40482128,40482323,40484483,40484920,40487035,40488545,40495986,40501533	40477729,40478333,40478648,40479842,40480768,40482206,40482416,40484609,40485007,40487460,40488969,40496520,40501597	0.833333
vagina_female_adult_53_years	chr21	36361819	36361826	36361825	+	High_confidence	7	7	13	0.580516	3.251629	chr21	36361604	36361889	SINE|Alu|AluSx1	+	chr21	36361835	36369115	MORC3|ENST00000484028.1	+	36361835,36364092,36368987	36362228,36364259,36369115	0.692308
vagina_female_adult_53_years	chr12	8850190	8850256	8850255	+	RAMPAGE_only	31	34	93	4.152921	5.594274	chr12	8850303	8850575	SINE|Alu|AluJb	+	chr12	8845003	8876783	A2ML1|NM_001282424.2	+	8845003,8845441,8846076,8847548,8848719,8849668,8850159,8851783,8852209,8854127,8854779,8855508,8857163,8857506,8857945,8860880,8861134,8863793,8867841,8868229,8868536,8869134,8874424,8874970,8876057	8845174,8845502,8846222,8847698,8848914,8849759,8850274,8852012,8852336,8854249,8854831,8855592,8857340,8857588,8858102,8860955,8861297,8864008,8868057,8868357,8868627,8869203,8874527,8875012,8876783	0.731183
vagina_female_adult_53_years	chr1	162781983	162782231	162782080	+	RAMPAGE_only	17	17	173	7.725326	3.648617	chr1	162782100	162782282	SINE|MIR|MIR3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.994220
vagina_female_adult_53_years	chr9	128167586	128167608	128167586	-	High_confidence	4	4	17	0.759136	3.452820	chr9	128167427	128167643	SINE|MIR|MIR	-	chr9	128166064	128167473	CIZ1|ENST00000485862.5	-	128166064,128166758,128167094	128166406,128166880,128167473	0.941176
vagina_female_adult_53_years	chr12	7502477	7502518	7502517	-	High_confidence	17	18	82	3.661715	5.621928	chr12	7502484	7502566	LINE|CR1|L3	+	chr12	7471179	7502737	CD163|ENST00000541972.5	-	7471179,7479859,7481160,7482642,7482965,7483366,7485095,7486498,7486893,7487358,7487772,7495080,7496812,7498867,7501138,7502477,7502716	7471397,7479913,7481256,7482762,7483004,7483675,7485416,7486813,7486986,7487673,7488087,7495401,7497133,7499188,7501462,7502564,7502737	0.975610
vagina_female_adult_53_years	chr11	90251204	90251205	90251204	+	High_confidence	19	24	24	1.071722	4.334963	chr11	90251016	90251397	LTR|ERVL-MaLR|MSTA	+	chr11	90251203	90915048	DISC1FP1|ENST00000649150.1	+	90251203,90361558,90546753,90801765,90844879,90849383,90852615,90914869	90251317,90361622,90546895,90801862,90844949,90849540,90852707,90915048	0.666667
vagina_female_adult_53_years	chr11	114295318	114295337	114295318	+	High_confidence	4	4	8	0.357241	2.750000	chr11	114294850	114295386	LTR|ERV1|LTR35A	-	chr11	114295812	114312516	NNMT|NM_006169.2	+	114295812,114297950,114312044	114296710,114298158,114312516	0.500000
vagina_female_adult_53_years	chr9	121498595	121498661	121498595	-	RAMPAGE_only	3	3	22	0.982411	3.697846	chr9	121498508	121498653	SINE|MIR|MIRb	-	chr9	121444990	121499757	GGTA1P|ENST00000495328.5	-	121444990,121455654,121460103,121461251,121463292,121467842,121479065,121499649	121447597,121455841,121460219,121461317,121463328,121467931,121479334,121499757	0.818182
vagina_female_adult_53_years	chr3	197299271	197299317	197299271	-	High_confidence	8	8	22	0.982411	4.201841	chr3	197299250	197299363	SINE|MIR|MIR3	-	chr3	197042559	197299272	DLG1|NM_001290983.1	-	197042559,197051576,197059888,197065275,197065707,197066703,197069218,197075836,197081050,197085579,197090911,197104902,197115926,197119409,197130526,197136541,197138221,197140139,197142717,197149742,197161639,197194424,197282678,197296345,197297185,197299044	197044729,197051668,197059998,197065448,197065809,197066754,197069260,197075870,197081117,197085756,197091026,197105005,197116083,197119530,197130671,197136678,197138391,197140264,197142768,197149796,197161738,197194589,197282845,197296477,197297235,197299272	0.909091
vagina_female_adult_53_years	chr19	11106462	11106463	11106462	+	High_confidence	11	11	15	0.669826	3.773557	chr19	11106225	11106493	SINE|Alu|AluJo	-	chr19	11106355	11107515	LDLR|ENST00000558528.1	+	11106355,11107391	11106687,11107515	0.733333
vagina_female_adult_53_years	chr21	13883357	13883421	13883420	-	High_confidence	4	5	26	1.161032	4.220176	chr21	13881831	13883382	LTR|ERVL-MaLR|MSTA-int	-	chr21	13881836	13884151	STRG.102488.1	-	13881836	13884151	0.807692
vagina_female_adult_53_years	chr12	95172685	95172729	95172685	-	RAMPAGE_only	6	6	18	0.803791	3.969816	chr12	95172658	95172733	LINE|CR1|L3	-	chr12	95092827	95217379	FGD6|ENST00000549499.1	-	95092827,95094591,95105006,95106953,95107562,95108347,95108502,95113650,95134738,95137521,95141387,95152810,95152925,95172599,95208842,95217224	95092845,95094694,95105086,95107037,95107631,95108419,95108561,95113701,95134826,95137678,95141539,95152841,95152993,95172744,95211267,95217379	0.722222
vagina_female_adult_53_years	chr6	30296213	30296226	30296213	-	RAMPAGE_only	3	3	10	0.446551	2.921928	chr6	30296051	30296310	LTR|ERVL-MaLR|MLT1I	-	chr6	30291005	30326334	HCG18|ENST00000444126.5	-	30291005,30296131,30314268,30326008	30294964,30296237,30314482,30326334	1.000000
vagina_female_adult_53_years	chr19	35115816	35115845	35115816	+	High_confidence	6	6	38	1.696892	4.482289	chr19	35115840	35115949	LINE|CR1|L3	+	chr19	35115940	35123657	FXYD3|ENST00000603181.5	+	35115940,35116263,35119167,35119362,35121077,35121221,35122764,35122917,35123270,35123440	35116040,35116359,35119251,35119416,35121110,35121245,35122839,35122954,35123308,35123657	0.526316
vagina_female_adult_53_years	chr22	25014428	25014453	25014452	+	RAMPAGE_only	2	3	7	0.312585	2.584963	chr22	25014407	25014703	SINE|Alu|AluJr	-	chr22	25025320	25025795	STRG.104317.3	+	25025320	25025795	0.571429
vagina_female_adult_53_years	chr2	86482616	86482630	86482629	+	RAMPAGE_only	5	5	9	0.401896	2.725481	chr2	86482567	86482634	LINE|CR1|L3	-	chr2	86484680	86489590	KDM3A|ENST00000462197.1	+	86484680,86484941,86485728,86489317,86489519	86484718,86485029,86485859,86489437,86489590	0.555556
vagina_female_adult_53_years	chr18	36807868	36807870	36807869	-	High_confidence	5	7	11	0.491206	3.277613	chr18	36807753	36807857	LINE|CR1|L3	-	chr18	36796925	36807934	TPGS2|ENST00000590500.5	-	36796925,36798448,36800197,36807846	36797050,36798609,36800311,36807934	0.818182
vagina_female_adult_53_years	chr8	102299113	102299114	102299113	-	RAMPAGE_only	10	10	12	0.535861	3.251629	chr8	102299077	102299124	LTR|ERV1|MER66B	+	chr8	102271380	102305182	STRG.55017.4	-	102271380,102275520,102275707,102276971,102278825,102279035,102280393,102281288,102285126,102285512,102286359,102287432,102288154,102289452,102293604,102294981,102295203,102295413,102295635,102296892,102297457,102298391,102298847,102299451,102299999,102304042,102305084	102272772,102275619,102275828,102277192,102278939,102279208,102280467,102281519,102285338,102285781,102286617,102287564,102288266,102289576,102294115,102295111,102295330,102295532,102295782,102296984,102297606,102298489,102298971,102299547,102300151,102304169,102305182	0.833333
vagina_female_adult_53_years	chr1	55177991	55177993	55177991	-	RAMPAGE_only	3	5	7	0.312585	2.584963	chr1	55177782	55177949	SINE|MIR|MIR3	-	chr1	55066358	55215113	USP24|ENST00000294383.6	-	55066358,55071813,55072316,55072785,55073827,55075456,55077234,55078537,55079537,55081321,55083271,55083771,55085941,55089626,55092022,55092820,55093936,55095254,55096497,55096951,55097597,55097942,55098475,55099770,55100838,55101583,55103875,55106145,55107238,55110184,55120595,55121435,55123446,55124468,55125319,55125662,55129476,55132544,55134069,55134327,55137514,55137805,55138607,55138943,55141615,55142741,55142978,55144126,55145997,55146928,55147648,55148462,55153869,55154118,55154370,55154670,55156947,55157255,55158877,55159610,55162198,55165884,55166567,55171555,55172376,55176375,55177966,55214789	55069107,55071924,55072403,55072861,55073906,55075523,55077300,55078651,55079659,55081424,55083364,55083888,55086038,55089740,55092126,55092916,55094087,55095396,55096622,55097172,55097717,55098084,55098558,55099869,55100964,55101703,55104020,55106263,55107430,55110246,55120756,55121506,55123602,55124628,55125548,55125758,55129574,55132700,55134163,55134413,55137688,55137904,55138718,55139010,55141731,55142795,55143119,55144203,55146109,55147060,55147798,55148570,55153917,55154280,55154466,55154778,55157051,55157370,55159036,55159685,55162264,55165950,55166603,55171678,55172520,55176443,55178132,55215113	0.857143
vagina_female_adult_53_years	chr2	113129431	113129507	113129496	+	RAMPAGE_only	49	56	206	9.198943	6.604349	chr2	113129336	113129539	SINE|MIR|MIRb	+	chr2	113127575	113129982	IL1RN|ENST00000472292.1	+	113127575,113129575	113127740,113129982	0.796117
vagina_female_adult_53_years	chrX	73841820	73841877	73841862	-	High_confidence	4	4	28	1.250342	3.958229	chrX	73841816	73841941	SINE|MIR|MIRc	-	chrX	73831117	73841639	XIST|ENST00000602863.2	-	73831117,73833237,73837439,73841291	73831274,73833374,73837503,73841639	0.928571
vagina_female_adult_53_years	chr22	18149863	18149871	18149868	+	High_confidence	9	9	26	1.161032	3.329229	chr22	18149658	18149942	SINE|Alu|AluSx	+	chr22	18149898	18177397	USP18|ENST00000215794.7	+	18149898,18157557,18160171,18161789,18167254,18167889,18169843,18170752,18173149,18173792,18176771	18150222,18157820,18160268,18161935,18167334,18168036,18169939,18170920,18173281,18173842,18177397	1.000000
vagina_female_adult_53_years	chr5	95509593	95509600	95509593	-	RAMPAGE_only	2	2	7	0.312585	2.584963	chr5	95509233	95509575	LTR|ERV1|MER61B	-	chr5	95502902	95516674	TTC37|ENST00000508181.5	-	95502902,95503813,95506933,95509593,95512476,95513570,95514854,95516352,95516524	95503003,95503938,95506992,95509687,95512618,95513645,95514923,95516409,95516674	0.571429
vagina_female_adult_53_years	chr11	119046586	119046604	119046591	-	RAMPAGE_only	3	3	15	0.669826	3.506891	chr11	119046395	119046589	DNA|hAT-Ac|OldhAT1	-	chr11	119045310	119057134	HYOU1|ENST00000621959.4	-	119045310,119045780,119046416,119046561,119047733,119047946,119048247,119048475,119048713,119049555,119049776,119051034,119051437,119051818,119052089,119052294,119052636,119054120,119054493,119054983,119055184,119055492,119055749,119056069,119056278,119057019	119045654,119045831,119046467,119046802,119047818,119048080,119048370,119048563,119048886,119049635,119049837,119051173,119051625,119051951,119052172,119052429,119052829,119054236,119054675,119055060,119055339,119055571,119055843,119056167,119056418,119057134	1.000000
vagina_female_adult_53_years	chr11	57793985	57794073	57794023	+	RAMPAGE_only	17	21	60	2.679304	5.194309	chr11	57794038	57794080	LINE|L1|L1MEf	+	chr11	57791558	57801794	CTNND1|ENST00000534647.1	+	57791558,57795576,57796456,57801732	57791673,57795729,57796992,57801794	0.800000
vagina_female_adult_53_years	chr1	111192159	111192194	111192189	-	RAMPAGE_only	3	3	13	0.580516	3.418296	chr1	111191905	111192139	SINE|MIR|MIRb	-	chr1	111185785	111189998	STRG.4544.5	-	111185785,111188130,111189211	111187681,111188786,111189998	0.615385
vagina_female_adult_53_years	chrX	74254081	74254324	74254310	-	RAMPAGE_only	18	19	258	11.521007	5.636589	chrX	74254189	74254325	LTR|ERV1|HUERS-P3b-int	+	chrX	74219895	74292529	STRG.108186.3	-	74219895,74273574,74280930,74281701,74292426	74273527,74280494,74281085,74281848,74292529	0.984496
vagina_female_adult_53_years	chr1	60640423	60640441	60640429	-	High_confidence	3	3	11	0.491206	3.277613	chr1	60640012	60646037	LINE|L1|L1PA2	+	chr1	60640010	60640424	STRG.3188.1	-	60640010	60640424	0.545455
vagina_female_adult_53_years	chr8	86515467	86515485	86515484	+	High_confidence	2	3	8	0.357241	3.000000	chr8	86515376	86515543	SINE|MIR|MIRb	-	chr8	86514503	86532580	CPNE3|ENST00000523469.5	+	86514503,86515461,86521603,86528535,86528944,86531154,86532508	86514541,86515499,86521714,86528677,86529124,86531229,86532580	0.875000
vagina_female_adult_53_years	chr1	162781344	162781362	162781361	+	RAMPAGE_only	5	8	15	0.669826	3.664498	chr1	162781283	162781590	LINE|CR1|L3	+	chr1	162632464	162787400	DDR2|ENST00000367922.7	+	162632464,162655210,162705051,162719036,162753094,162754623,162755155,162755663,162759795,162761210,162766000,162767228,162770301,162772023,162773468,162775651,162776135,162778579,162780111	162632631,162655374,162705131,162719145,162753197,162754855,162755303,162755769,162759979,162761454,162766063,162767359,162770512,162772247,162773596,162775843,162776370,162778729,162787400	0.933333
vagina_female_adult_53_years	chr12	113334535	113334553	113334552	-	High_confidence	3	3	7	0.312585	2.521641	chr12	113334544	113334646	SINE|MIR|MIRb	+	chr12	113320849	113334613	SLC8B1|ENST00000552613.1	-	113320849,113321055,113321195,113332748,113334442	113320907,113321108,113321348,113332960,113334613	1.000000
vagina_female_adult_53_years	chr12	24368595	24368634	24368633	-	RAMPAGE_only	2	3	8	0.357241	2.750000	chr12	24368549	24368674	LINE|L2|L2b	+	chr12	23845998	24357430	SOX5|ENST00000536729.2	-	23845998,23895897,24213342,24277215,24357337	23846193,23896024,24213417,24277312,24357430	0.875000
vagina_female_adult_53_years	chrX	20204046	20204050	20204046	-	RAMPAGE_only	8	8	16	0.714481	3.506891	chrX	20204025	20204065	DNA|hAT-Ac|OldhAT1	-	chrX	20154931	20214751	STRG.106377.5	-	20154931,20156108,20161643,20162963,20164898,20167588,20169401,20172745,20175163,20176249,20176433,20176995,20186295,20187827,20188496,20193486,20194188,20195064,20204021,20209287,20214179	20155520,20156249,20161761,20163040,20165060,20167747,20169491,20172871,20175288,20176352,20176498,20177084,20186366,20187970,20188534,20193593,20194268,20195145,20204103,20209404,20214751	0.937500
vagina_female_adult_53_years	chr5	133089568	133089678	133089677	+	RAMPAGE_only	14	15	83	3.706370	5.736250	chr5	133089723	133089870	SINE|Alu|FLAM_C	+	chr5	133052240	133103908	HSPA4|ENST00000615899.1	+	133052240,133064979,133067416,133070373,133073229,133073992,133076653,133086781,133088403,133089054,133089561,133091165,133091216,133092699,133096097,133097160,133099544,133101758,133103864	133052357,133065037,133067557,133070496,133073329,133074126,133076898,133086858,133088555,133089161,133089662,133091215,133091374,133092789,133096250,133097286,133099652,133101878,133103908	1.000000
vagina_female_adult_53_years	chr5	148112626	148112655	148112626	+	RAMPAGE_only	3	3	10	0.446551	3.169925	chr5	148112392	148112701	SINE|Alu|AluSc	+	chr5	148064002	148137289	SPINK5|ENST00000256084.7	+	148064002,148065346,148070322,148072147,148086404,148088541,148089493,148091164,148094353,148095817,148097866,148099233,148100453,148101354,148101780,148104951,148107036,148108752,148111767,148112867,148114361,148116369,148118436,148118985,148120008,148120294,148123832,148124764,148125722,148126982,148131258,148133796,148136982	148064099,148065372,148070450,148072220,148086532,148088605,148089621,148091228,148094481,148095905,148097994,148099315,148100581,148101436,148101908,148105000,148107164,148108837,148111895,148112934,148114489,148116466,148118564,148119058,148120136,148120391,148123960,148124837,148125850,148127079,148131389,148133887,148137289	0.500000
vagina_female_adult_53_years	chr12	53464795	53464834	53464823	+	RAMPAGE_only	7	9	54	2.411374	4.852498	chr12	53464680	53465035	SINE|tRNA|LFSINE_Vert	-	chr12	53467722	53479821	PCBP2|ENST00000547048.5	+	53467722,53471637,53479405	53468832,53471807,53479821	0.888889
vagina_female_adult_53_years	chr20	31573327	31573364	31573363	+	High_confidence	3	3	13	0.580516	3.418296	chr20	31573375	31573489	SINE|MIR|MIR	+	chr20	31573297	31573665	STRG.101335.1	+	31573297	31573665	0.692308
vagina_female_adult_53_years	chr17	28234030	28234048	28234045	-	RAMPAGE_only	5	5	27	1.205687	4.623517	chr17	28231014	28238844	LTR|ERV1|HERVE-int	-	chr17	28232589	28235281	ERVE-1|ENST00000592016.1	-	28232589	28235281	0.962963
vagina_female_adult_53_years	chr5	55982724	55982740	55982739	-	High_confidence	3	5	17	0.759136	3.577820	chr5	55982553	55982814	SINE|MIR|MIRc	-	chr5	55947560	55982800	IL6ST|ENST00000522633.2	-	55947560,55951463,55951928,55952249,55954809,55956024,55960401,55963351,55964145,55968275,55969549,55976214,55982723	55947589,55951604,55952075,55952351,55954992,55956235,55960561,55963506,55964312,55968396,55969855,55976293,55982800	0.941176
vagina_female_adult_53_years	chrX	47196983	47196984	47196983	+	High_confidence	10	10	11	0.491206	3.121928	chrX	47196917	47197110	SINE|MIR|MIRb	-	chrX	47197198	47200962	UBA1|ENST00000451702.2	+	47197198,47198802,47199047,47199208,47199479,47200893	47198355,47198919,47199106,47199377,47199614,47200962	0.636364
vagina_female_adult_53_years	chr2	29114149	29114174	29114163	+	High_confidence	10	12	52	2.322063	5.339769	chr2	29114092	29114603	LINE|CR1|L3	+	chr2	29113995	29181923	CLIP4|ENST00000404424.5	+	29113995,29121373,29131257,29132151,29133654,29135547,29143708,29145231,29152684,29156353,29157203,29160332,29163830,29167475,29174372,29181571	29114312,29121521,29131397,29132245,29133816,29135666,29143945,29145367,29152828,29156443,29157347,29160467,29163954,29167540,29174445,29181923	0.807692
vagina_female_adult_53_years	chr15	60396194	60396225	60396203	-	RAMPAGE_only	3	3	10	0.446551	3.169925	chr15	60396113	60396218	SINE|Alu|FLAM_A	-	chr15	60395644	60397986	ANXA2|ENST00000560936.2	-	60395644,60397257,60397942	60396427,60397338,60397986	0.800000
vagina_female_adult_53_years	chr11	47214434	47214463	47214462	+	High_confidence	4	4	16	0.714481	3.452820	chr11	47214510	47214787	SINE|Alu|AluJo	+	chr11	47214464	47216873	DDB2|ENST00000622878.4	+	47214464,47215070,47216335,47216857	47214674,47215263,47216472,47216873	0.750000
vagina_female_adult_53_years	chr3	197546728	197546732	197546731	-	RAMPAGE_only	5	6	11	0.491206	3.027169	chr3	197546665	197546787	SINE|MIR|MIR3	+	chr3	197546118	197555956	BDH1|ENST00000492681.1	-	197546118,197555780	197546486,197555956	0.636364
vagina_female_adult_53_years	chr4	67930313	67930336	67930330	-	RAMPAGE_only	3	3	12	0.535861	3.277613	chr4	67930296	67930695	LINE|CR1|L3	-	chr4	67910300	67963426	STRG.28533.3	-	67910300,67914587,67918972,67922754,67924127,67929879,67931992,67944518,67946449,67963382	67911503,67914730,67919232,67922926,67924166,67930265,67932060,67944637,67946571,67963426	0.916667
vagina_female_adult_53_years	chr16	20674497	20674498	20674497	+	High_confidence	270	274	292	13.039279	5.237737	chr16	20674103	20674608	LTR|ERV1|LTR15	+	chr16	20674509	20755608	ACSM3|ENST00000501740.6	+	20674509,20679157,20749264,20749909,20755572	20674822,20679449,20749368,20750003,20755608	0.910959
vagina_female_adult_53_years	chr8	17653739	17653749	17653739	-	RAMPAGE_only	17	17	27	1.205687	4.004344	chr8	17653609	17653721	SINE|MIR|MIRc	-	chr8	17647003	17655025	MTUS1|ENST00000523471.5	-	17647003,17649845,17653185,17653424,17654560	17647079,17649962,17653281,17653498,17655025	0.888889
vagina_female_adult_53_years	chr4	70763610	70763611	70763610	+	RAMPAGE_only	5	5	7	0.312585	2.521641	chr4	70763601	70763658	LINE|L2|L2a	-	chr4	70734433	70807102	RUFY3|ENST00000502653.5	+	70734433,70741626,70762518,70763551,70764474,70768537,70773510,70775167,70778368,70783090,70784795,70788805,70789494,70793784,70794794,70800140,70802955,70804347,70806515	70734593,70741680,70762692,70763669,70764576,70768661,70773572,70775233,70778438,70783183,70784879,70788973,70789592,70793904,70794894,70800205,70802983,70804416,70807102	1.000000
vagina_female_adult_53_years	chr16	30354648	30354682	30354660	-	High_confidence	9	9	48	2.143443	4.672995	chr16	30354643	30354708	LINE|CR1|L3	-	chr16	30350765	30354934	CD2BP2|NM_001243646.1	-	30350765,30353180,30353367,30353900,30354183,30354603	30353095,30353287,30353800,30354058,30354322,30354934	1.000000
vagina_female_adult_53_years	chr5	75336397	75336432	75336431	+	High_confidence	2	2	6	0.267930	2.584963	chr5	75336421	75336612	LINE|L2|L2	-	chr5	75336530	75348070	STRG.33742.4	+	75336530,75342582,75343852,75345573,75347203	75336617,75342770,75344332,75345658,75348070	0.666667
vagina_female_adult_53_years	chr19	58312242	58312257	58312242	+	RAMPAGE_only	6	6	11	0.491206	2.663533	chr19	58311248	58313278	LTR|ERVK|HERVK3-int	+	chr19	58309029	58315203	ERVK3-1|ENST00000590505.1	+	58309029,58314747	58312462,58315203	0.909091
vagina_female_adult_53_years	chr12	12635903	12635914	12635913	+	RAMPAGE_only	3	3	9	0.401896	3.169925	chr12	12635954	12636147	LINE|L1|L1ME3G	+	chr12	12611891	12645108	CREBL2|ENST00000228865.2	+	12611891,12635776,12637569,12641993	12612187,12635974,12637714,12645108	1.000000
vagina_female_adult_53_years	chr7	7537202	7537218	7537202	-	RAMPAGE_only	2	2	6	0.267930	2.584963	chr7	7536885	7537476	DNA|TcMar-Tigger|MER6A	-	chr7	7357874	7535853	COL28A1|ENST00000399429.7	-	7357874,7360389,7370724,7372997,7375460,7380659,7380781,7381543,7417858,7419884,7432472,7432631,7436394,7437393,7440789,7443584,7444417,7452318,7453439,7456043,7474600,7477111,7489388,7490577,7506013,7507116,7511090,7515813,7517795,7520061,7521904,7524228,7531347,7532751,7535749	7358805,7360528,7370882,7373546,7375497,7380695,7380862,7381612,7417927,7419953,7432541,7432700,7436463,7437462,7440861,7443653,7444489,7452387,7453508,7456112,7474669,7477180,7489457,7490646,7506067,7507161,7511135,7515840,7517837,7520115,7521961,7524249,7531904,7532912,7535853	0.666667
vagina_female_adult_53_years	chr13	52690940	52690941	52690940	+	RAMPAGE_only	7	8	10	0.446551	2.947703	chr13	52690881	52691035	SINE|Alu|AluJo	-	chr13	52652865	52700909	SUGT1|ENST00000310528.8	+	52652865,52653045,52657531,52658398,52659178,52662648,52663095,52664034,52665636,52666811,52676229,52679973,52687733	52652958,52653103,52657622,52658468,52659249,52662702,52663112,52664057,52665733,52666919,52676320,52680155,52700909	0.900000
vagina_female_adult_53_years	chr15	88635631	88635661	88635660	+	High_confidence	13	16	40	1.786203	4.584184	chr15	88634947	88635968	DNA|TcMar-Tigger|Tigger2b_Pri	-	chr15	88635636	88656344	ISG20|NM_001303234.1	+	88635636,88636166,88639342,88652109,88655414	88635700,88636292,88639594,88652310,88656344	0.675000
vagina_female_adult_53_years	chr14	81192622	81192682	81192622	-	RAMPAGE_only	29	29	81	3.617060	5.284507	chr14	81192575	81192635	LINE|CR1|L3	-	chr14	81175451	81220922	GTF2A1|ENST00000553612.5	-	81175451,81185530,81192518,81196107,81197408,81201593,81203899,81216412,81220488	81180330,81185620,81192839,81196241,81197484,81201658,81204104,81216514,81220922	0.987654
vagina_female_adult_53_years	chr12	19149702	19149779	19149720	+	RAMPAGE_only	19	20	99	4.420851	4.810461	chr12	19149533	19150028	LTR|ERVL-MaLR|MLT1H	-	chr12	19147073	19154659	AC092828.1|ENST00000501211.2	+	19147073,19149475	19147280,19154659	0.969697
vagina_female_adult_53_years	chr6	46658525	46658593	46658592	+	High_confidence	5	6	24	1.071722	3.788755	chr6	46658495	46658626	LINE|L2|L2c	-	chr6	46658662	46668747	SLC25A27|ENST00000603486.5	+	46658662,46662375,46664773,46668708	46659046,46662498,46664886,46668747	0.916667
vagina_female_adult_53_years	chr17	4187108	4187109	4187108	-	High_confidence	14	14	18	0.803791	4.058814	chr17	4187012	4187196	LINE|L1|L1PB2	-	chr17	4183525	4187109	ANKFY1|ENST00000574736.1	-	4183525,4183811,4184817,4186893	4183551,4183910,4185046,4187109	0.833333
vagina_female_adult_53_years	chr1	45522858	45522888	45522858	-	High_confidence	14	14	34	1.518272	4.155639	chr1	45522751	45523044	SINE|Alu|AluSx3	-	chr1	45511034	45522890	PRDX1|NM_001202431.1	-	45511034,45514506,45514872,45515653,45518937,45522777	45511414,45514637,45514995,45515807,45519054,45522890	0.941176
vagina_female_adult_53_years	chr8	18063197	18063205	18063197	-	High_confidence	5	5	11	0.491206	3.321928	chr8	18062865	18063167	SINE|Alu|AluSg7	-	chr8	18056545	18063143	ASAH1|ENST00000638028.1	-	18056545,18058834,18059340,18059571,18061376,18061685,18062278	18057623,18058891,18059464,18059703,18061458,18061740,18063143	0.909091
vagina_female_adult_53_years	chr5	103129616	103129651	103129616	+	High_confidence	4	4	11	0.491206	2.721928	chr5	103129660	103129708	LINE|RTE-BovB|MamRTE1	+	chr5	103129305	103203523	PPIP5K2|NM_015216.3	+	103129305,103133452,103136731,103138383,103146526,103147930,103149151,103151252,103152647,103153847,103154669,103154833,103155908,103158187,103158451,103159145,103167178,103168071,103173154,103173857,103177666,103177863,103180020,103183233,103184671,103186319,103190841,103194899,103201521	103129703,103133648,103136822,103138469,103146681,103148032,103149313,103151374,103152749,103153934,103154745,103154943,103155994,103158313,103158573,103159328,103167320,103168295,103173282,103173972,103177774,103177980,103180188,103183407,103184744,103186439,103190982,103195025,103203523	0.909091
vagina_female_adult_53_years	chr1	51366115	51366122	51366115	-	RAMPAGE_only	7	7	18	0.803791	2.984234	chr1	51366072	51366367	SINE|Alu|AluJb	-	chr1	51354262	51422121	EPS15|NM_001159969.1	-	51354262,51361170,51363865,51365952,51394380,51399031,51400917,51402434,51403418,51405904,51408134,51409534,51421785	51356846,51361355,51364028,51366029,51394447,51399165,51400953,51402525,51403532,51406108,51408332,51409696,51422121	0.944444
vagina_female_adult_53_years	chr6	33263601	33263631	33263630	-	High_confidence	2	2	8	0.357241	2.807355	chr6	33263613	33263730	LINE|L2|L2b	-	chr6	33250605	33263613	VPS52|ENST00000495981.5	-	33250605,33251517,33251859,33263483	33250987,33251636,33251971,33263613	0.500000
vagina_female_adult_53_years	chr14	22880853	22880867	22880866	+	RAMPAGE_only	4	4	10	0.446551	2.947703	chr14	22880727	22881017	SINE|Alu|AluSc	+	chr14	22875135	22881408	STRG.78737.4	+	22875135,22875354,22876688,22876939,22879198	22875245,22876372,22876818,22878570,22881408	0.800000
vagina_female_adult_53_years	chr21	38816559	38816602	38816601	+	High_confidence	11	11	26	1.161032	3.686419	chr21	38816611	38816723	LINE|L2|L2b	+	chr21	38816117	38824955	STRG.103489.3	+	38816117,38822673	38821704,38824955	1.000000
vagina_female_adult_53_years	chr5	168669800	168669820	168669800	-	RAMPAGE_only	2	2	9	0.401896	2.947703	chr5	168669607	168669760	SINE|MIR|MIRc	-	chr5	168661732	168883338	SLIT3|ENST00000404867.7	-	168661732,168669782,168671197,168673176,168683965,168685686,168686978,168692606,168696291,168700581,168707975,168710894,168712282,168722255,168722932,168724415,168748301,168749471,168752954,168753863,168760861,168762538,168772780,168774234,168785906,168789559,168795506,168806445,168817299,168823259,168844583,168883264	168666689,168669991,168671483,168673331,168684096,168685927,168687116,168692700,168696431,168700679,168708121,168711058,168712354,168722327,168723004,168724484,168748434,168749635,168753098,168754007,168760936,168762689,168772944,168774378,168785978,168789631,168795578,168806587,168817463,168823331,168844655,168883338	1.000000
vagina_female_adult_53_years	chr20	34504248	34504270	34504269	+	RAMPAGE_only	4	4	12	0.535861	3.418296	chr20	34504180	34504293	DNA|hAT-Charlie|MER5A	-	chr20	34363311	34508035	ITCH|ENST00000262650.10	+	34363311,34369393,34393790,34408650,34412514,34413741,34417116,34424479,34438473,34440154,34442207,34445286,34449410,34457389,34462092,34470047,34471443,34477771,34479629,34480598,34481065,34489265,34489821,34492500,34504330,34507694	34363349,34369470,34393881,34408792,34412639,34413879,34417239,34424525,34438631,34440344,34442303,34445461,34449480,34457474,34462221,34470120,34471515,34477860,34479789,34480732,34481206,34489386,34489926,34492597,34504403,34508035	0.500000
vagina_female_adult_53_years	chr15	60396156	60396174	60396168	-	RAMPAGE_only	3	6	14	0.625171	3.180833	chr15	60396113	60396218	SINE|Alu|FLAM_A	-	chr15	60395644	60397986	ANXA2|ENST00000560936.2	-	60395644,60397257,60397942	60396427,60397338,60397986	0.857143
vagina_female_adult_53_years	chr1	12356407	12356456	12356414	+	High_confidence	5	10	29	1.294997	3.528242	chr1	12356411	12356449	LINE|CR1|L3b	-	chr1	12356350	12510346	VPS13D|ENST00000646411.1	+	12356350,12362719,12363071,12368467,12369466,12373749,12378427,12379487,12382975,12385259,12386184,12400180,12401607,12403824,12415086,12416659,12455997,12460200,12497499,12506852,12508892	12356524,12362850,12363247,12368591,12369702,12373858,12378591,12379596,12383155,12385373,12386334,12400330,12401704,12403973,12415221,12416827,12456130,12460396,12497631,12507093,12510346	0.586207
vagina_female_adult_53_years	chr5	1579501	1579514	1579501	-	RAMPAGE_only	4	4	9	0.401896	2.947703	chr5	1578346	1579846	LTR|ERVK|HERVK9-int	-	chr5	1574072	1583722	STRG.32086.2	-	1574072,1576178,1579276	1574295,1576309,1583722	0.888889
vagina_female_adult_53_years	chr15	67166512	67166533	67166530	+	High_confidence	50	50	135	6.028434	5.090707	chr15	67166449	67166543	LINE|L2|L2b	-	chr15	67166530	67181420	SMAD3|ENST00000558428.5	+	67166530,67170553,67181240	67166853,67170604,67181420	0.970370
vagina_female_adult_53_years	chr16	72627661	72627720	72627661	-	High_confidence	6	6	26	1.161032	4.546594	chr16	72627274	72633298	LINE|L1|L1PA2	+	chr16	72479750	72627686	LINC01572|ENST00000563770.5	-	72479750,72491903,72523331,72540577,72555264,72570434,72617182,72627534	72479790,72491966,72523415,72540611,72555326,72570515,72617234,72627686	0.576923
vagina_female_adult_53_years	chr15	71447697	71447698	71447697	+	RAMPAGE_only	5	5	8	0.357241	2.750000	chr15	71447681	71447942	LTR|ERVL-MaLR|MLT1J	-	chr15	71547201	71783383	THSD4|NM_001286429.1	+	71547201,71660529,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71771063,71777231	71547481,71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71771208,71783383	0.500000
vagina_female_adult_53_years	chr9	123179121	123179140	123179121	-	RAMPAGE_only	3	4	10	0.446551	3.321928	chr9	123179101	123179178	LINE|RTE-BovB|MamRTE1	-	chr9	123121630	123184310	STRBP|ENST00000447404.6	-	123121630,123128213,123132844,123136040,123136380,123139528,123146854,123147777,123158011,123158331,123159095,123160366,123160976,123169901,123173676,123179006,123184131	123125673,123128258,123132968,123136181,123136515,123139687,123147054,123147870,123158123,123158429,123159207,123160462,123161068,123170046,123173842,123179227,123184310	0.800000
vagina_female_adult_53_years	chr7	99410033	99410057	99410041	+	High_confidence	3	3	10	0.446551	2.947703	chr7	99409955	99410149	SINE|MIR|MIR3	-	chr7	99410113	99416299	BUD31|ENST00000471813.1	+	99410113,99411063,99416137	99410169,99411186,99416299	0.800000
vagina_female_adult_53_years	chr8	26395611	26395612	26395611	+	High_confidence	9	12	12	0.535861	3.418296	chr8	26395612	26401579	LINE|L1|L1PA2	+	chr8	26395616	26410519	BNIP3L|ENST00000521254.1	+	26395616,26407999,26408226,26410363	26395708,26408103,26408376,26410519	0.916667
vagina_female_adult_53_years	chr10	5699479	5699523	5699479	+	High_confidence	4	5	18	0.803791	3.690117	chr10	5699528	5699730	LINE|L1|L1M7	+	chr10	5699492	5714207	FAM208B|ENST00000463468.5	+	5699492,5712393,5712822,5714134	5699737,5712539,5712918,5714207	0.666667
vagina_female_adult_53_years	chr10	28335268	28335296	28335269	-	High_confidence	10	18	39	1.741548	4.195976	chr10	28334857	28335233	LTR|ERVL-MaLR|MLT1F	-	chr10	28334936	28335276	STRG.62196.1	-	28334936	28335276	0.897436
vagina_female_adult_53_years	chr11	12528315	12528331	12528317	+	RAMPAGE_only	5	7	16	0.714481	3.132915	chr11	12528254	12528421	SINE|MIR|MIRb	-	chr11	12377478	12535356	PARVA|ENST00000649199.1	+	12377478,12473744,12473912,12477846,12496457,12504313,12508583,12511513,12513298,12513996,12517609,12518444,12527848	12377783,12473834,12473983,12477949,12496598,12504429,12508642,12511533,12513360,12514065,12517711,12518517,12535356	0.937500
vagina_female_adult_53_years	chr6	36540256	36540277	36540276	-	RAMPAGE_only	3	4	6	0.267930	2.584963	chr6	36540200	36540626	LINE|L1|L1ME5	+	chr6	36517179	36547466	STRG.39515.2	-	36517179,36521733,36524340,36525590,36540071,36547189	36517840,36521817,36524463,36525642,36540204,36547466	0.666667
vagina_female_adult_53_years	chr19	35668451	35668465	35668451	+	RAMPAGE_only	9	9	15	0.669826	3.456565	chr19	35668318	35668452	SINE|MIR|MIRc	-	chr19	35666812	35678160	UPK1A|ENST00000379013.6	+	35666812,35668453,35673231,35673437,35675839,35676235,35677811,35677974	35666896,35668654,35673306,35673545,35676019,35676333,35677895,35678160	0.866667
vagina_female_adult_53_years	chr3	68976911	68976950	68976949	-	High_confidence	7	7	17	0.759136	3.852169	chr3	68976879	68977176	SINE|Alu|AluSz6	+	chr3	68975226	68977157	EOGT|ENST00000615922.1	-	68975226	68977157	1.000000
vagina_female_adult_53_years	chr8	53523827	53523863	53523862	-	High_confidence	2	2	8	0.357241	2.750000	chr8	53523623	53524714	LTR|ERV1|HERV3-int	-	chr8	53515170	53523931	AC022034.1|ENST00000426023.1	-	53515170,53523328	53516954,53523931	1.000000
vagina_female_adult_53_years	chr16	20674576	20674716	20674715	+	High_confidence	8	8	75	3.349130	5.083775	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20674530	20682176	ACSM3|ENST00000614721.1	+	20674530,20679157	20674822,20682176	0.893333
vagina_female_adult_53_years	chr2	166185025	166185032	166185031	+	RAMPAGE_only	9	9	18	0.803791	3.690117	chr2	166184665	166185205	LINE|L2|L2a	-	chr2	166149180	166294588	AC010127.1|ENST00000630020.2	+	166149180,166171386,166199638,166248194,166249342,166251833,166277087,166294564	166149572,166171558,166199818,166248276,166249384,166251912,166277247,166294588	0.611111
vagina_female_adult_53_years	chr18	39800293	39800314	39800313	-	High_confidence	18	26	74	3.304475	5.839888	chr18	39800101	39800435	LTR|ERV1|MER61A	-	chr18	39206923	39800318	AC016205.1|ENST00000591629.1	-	39206923,39535457,39751328,39800068	39208789,39535615,39751360,39800318	0.540541
vagina_female_adult_53_years	chr11	93735040	93735073	93735059	-	High_confidence	2	2	11	0.491206	3.121928	chr11	93734781	93735053	SINE|Alu|AluJr	-	chr11	93730353	93735238	TAF1D|ENST00000529435.5	-	93730353,93730676,93731149,93731752,93732243,93733086,93733349,93734624	93730447,93730712,93731216,93731799,93732291,93733121,93733419,93735238	0.909091
vagina_female_adult_53_years	chr12	110440319	110440374	110440319	-	RAMPAGE_only	11	12	48	2.143443	5.096934	chr12	110440194	110440284	SINE|MIR|MIRb	-	chr12	110434909	110437299	ARPC3|ENST00000467622.2	-	110434909,110436109,110437083	110435217,110436683,110437299	0.895833
vagina_female_adult_53_years	chr2	101281862	101281909	101281862	-	RAMPAGE_only	2	2	10	0.446551	3.321928	chr2	101281489	101281823	SINE|Alu|AluJo	-	chr2	101276090	101308696	RNF149|ENST00000295317.3	-	101276090,101281858,101286080,101288972,101294013,101294930,101308128	101277281,101282057,101286177,101289055,101294082,101295181,101308696	0.900000
vagina_female_adult_53_years	chr16	15006394	15006398	15006397	+	RAMPAGE_only	5	5	11	0.491206	3.027169	chr16	15006391	15006477	LINE|CR1|L3	+	chr16	15009310	15017153	PDXDC1|ENST00000561930.1	+	15009310,15016128,15017119	15009759,15016213,15017153	0.545455
vagina_female_adult_53_years	chr5	177883466	177883483	177883472	+	RAMPAGE_only	13	21	53	2.366718	4.963216	chr5	177883451	177883608	SINE|MIR|MIR	+	chr5	177875521	177884272	AC106795.1|ENST00000506672.5	+	177875521,177876531,177878643,177882368,177882651,177883666	177875860,177876688,177878848,177882530,177882752,177884272	0.886792
vagina_female_adult_53_years	chr15	75347042	75347082	75347042	+	High_confidence	3	3	17	0.759136	3.616875	chr15	75346837	75347068	LINE|L2|L2b	+	chr15	75347037	75349057	NEIL1|ENST00000566313.5	+	75347037,75347202,75347958,75348883	75347110,75347473,75347999,75349057	0.823529
vagina_female_adult_53_years	chr8	32927967	32927984	32927976	+	RAMPAGE_only	10	10	28	1.250342	4.458591	chr8	32927779	32928214	LTR|ERVL|LTR33	+	chr8	32996177	33044802	AC090204.1|ENST00000520819.5	+	32996177,33041634,33044366	32996316,33041771,33044802	0.857143
vagina_female_adult_53_years	chr1	155378301	155378387	155378337	-	RAMPAGE_only	7	7	30	1.339652	4.530058	chr1	155378311	155378369	LINE|CR1|L3	+	chr1	155336054	155562532	ASH1L|ENST00000392403.7	-	155336054,155338088,155339327,155341935,155343313,155343603,155344182,155346382,155347655,155349326,155349541,155352705,155354472,155357315,155357584,155360300,155370503,155370776,155378280,155378502,155380042,155395458,155415743,155438326,155459796,155477885,155521099,155562152	155337751,155338390,155339368,155342102,155343486,155343742,155344273,155346469,155347904,155349459,155349596,155352858,155354630,155357410,155357749,155360409,155370650,155370983,155378389,155378548,155380116,155395553,155415923,155439068,155459898,155482449,155521618,155562532	0.866667
vagina_female_adult_53_years	chr1	155058718	155058785	155058784	+	High_confidence	5	6	31	1.384307	4.478232	chr1	155058811	155059033	SINE|MIR|MIRb	+	chr1	155058709	155062775	ADAM15|ENST00000474709.5	+	155058709,155059901,155060204,155062244,155062459	155058787,155059974,155060343,155062369,155062775	0.903226
vagina_female_adult_53_years	chr1	62116255	62116287	62116255	+	RAMPAGE_only	2	2	7	0.312585	2.521641	chr1	62116187	62116398	LINE|L1|L1ME4b	+	chr1	61952074	62178675	PATJ|ENST00000635137.1	+	61952074,61990167,62017855,62037976,62050965,62079449,62084514,62108436,62114052,62116531,62117131,62121180,62123020,62127971,62128840,62148283,62178422	61952411,61990364,62017947,62038049,62051058,62079567,62084648,62108520,62114246,62116679,62117218,62121295,62123058,62128094,62128945,62148390,62178675	0.571429
vagina_female_adult_53_years	chr5	148089222	148089249	148089222	+	RAMPAGE_only	4	4	14	0.625171	3.546594	chr5	148089083	148089302	LINE|L2|L2c	+	chr5	148090652	148098003	SPINK5|ENST00000481286.5	+	148090652,148091164,148094353,148095817,148097866	148090700,148091228,148094481,148095905,148098003	0.571429
vagina_female_adult_53_years	chr17	69251134	69251166	69251134	-	High_confidence	7	8	22	0.982411	4.011365	chr17	69250697	69251482	LINE|L1|L1MD3	-	chr17	69249287	69251628	ABCA5|ENST00000588106.1	-	69249287,69250471	69249984,69251628	0.954545
vagina_female_adult_53_years	chr12	55930641	55930642	55930641	+	High_confidence	11	11	11	0.491206	3.095795	chr12	55930357	55930665	SINE|Alu|AluSc8	-	chr12	55930971	55954015	DGKA|ENST00000331886.9	+	55930971,55936422,55937016,55937407,55937977,55938510,55938914,55939185,55939414,55940081,55940313,55940623,55940896,55941251,55941509,55941997,55942173,55951622,55952034,55952340,55952733,55953039,55953349,55953684	55931344,55936567,55937090,55937543,55938052,55938560,55938989,55939305,55939529,55940170,55940433,55940722,55940980,55941325,55941584,55942083,55942263,55951783,55952099,55952431,55952932,55953160,55953410,55954015	0.727273
vagina_female_adult_53_years	chr13	110057309	110057310	110057309	-	High_confidence	5	6	7	0.312585	2.521641	chr13	110056667	110057319	LTR|ERV1|LTR58	+	chr13	110036196	110057286	AL355974.2|ENST00000617298.1	-	110036196,110057125	110036971,110057286	0.571429
vagina_female_adult_53_years	chr12	76050748	76050795	76050770	-	RAMPAGE_only	4	5	24	1.071722	3.936180	chr12	76050731	76051020	SINE|Alu|AluJo	+	chr12	76049433	76053158	NAP1L1|ENST00000547969.5	-	76049433,76050530,76053090	76049785,76050653,76053158	0.791667
vagina_female_adult_53_years	chr1	209567771	209567778	209567777	-	High_confidence	12	33	49	2.188098	4.838567	chr1	209567578	209567919	LTR|ERVL-MaLR|MLT1I	-	chr1	209530835	209567816	STRG.7563.1	-	209530835,209532944,209540697,209541307,209542845,209546056,209566911,209567535,209567718	209532761,209533200,209540788,209541429,209542918,209546139,209566987,209567633,209567816	0.591837
vagina_female_adult_53_years	chr9	127451200	127451201	127451200	-	High_confidence	8	8	9	0.401896	2.750000	chr9	127451079	127451161	SINE|MIR|MIR3	-	chr9	127447676	127451373	RPL12|ENST00000536368.1	-	127447676,127447876,127448336,127449280,127450730,127451280	127447726,127447989,127448423,127449362,127450804,127451373	0.777778
vagina_female_adult_53_years	chrX	73837493	73837504	73837503	-	RAMPAGE_only	10	10	21	0.937756	3.344698	chrX	73836437	73837723	LINE|L1|L1MC3	+	chrX	73820671	73838873	XIST|ENST00000647696.1	-	73820671,73822070,73826114,73829067,73831065,73833237,73837439	73821029,73822216,73827984,73829231,73831274,73833374,73838873	0.904762
vagina_female_adult_53_years	chr1	54528738	54528769	54528768	-	RAMPAGE_only	4	5	17	0.759136	3.577820	chr1	54528534	54529066	LTR|ERVL-MaLR|MLT1J	-	chr1	54516411	54517259	AC099796.1|ENST00000433377.1	-	54516411,54517203	54517038,54517259	0.588235
vagina_female_adult_53_years	chr8	38850661	38850753	38850752	+	RAMPAGE_only	11	15	70	3.125855	5.197814	chr8	38850509	38850800	SINE|Alu|AluJb	+	chr8	38839283	38853028	TACC1|ENST00000519093.5	+	38839283,38842286,38843288,38846698,38847954	38840267,38842447,38843395,38846819,38853028	0.942857
vagina_female_adult_53_years	chr2	43137645	43137660	43137659	-	RAMPAGE_only	6	6	10	0.446551	2.947703	chr2	43137289	43137984	LINE|L2|L2a	+	chr2	43097745	43102691	LINC02580|ENST00000434020.1	-	43097745,43102034	43098040,43102691	0.500000
vagina_female_adult_53_years	chr1	155038159	155038164	155038163	+	RAMPAGE_only	4	4	8	0.357241	2.807355	chr1	155038092	155038557	LINE|L2|L2a	-	chr1	155033969	155049264	DCST1|ENST00000368419.2	+	155033969,155034434,155034652,155039402,155040484,155041396,155041713,155042734,155043351,155045892,155046124,155046359,155047195,155047786,155048056,155048993	155034097,155034560,155034727,155039531,155040624,155041613,155041857,155042856,155043509,155045992,155046220,155046486,155047312,155047929,155048170,155049264	0.500000
vagina_female_adult_53_years	chr19	53558567	53558634	53558633	+	RAMPAGE_only	15	15	46	2.054133	4.925523	chr19	53557977	53558807	LTR|ERVL|MER21A	-	chr19	53557300	53560782	STRG.99723.18	+	53557300,53559335	53558909,53560782	0.891304
vagina_female_adult_53_years	chr16	67183531	67183575	67183549	-	High_confidence	5	5	20	0.893101	4.037401	chr16	67183209	67183556	LINE|L2|L2b	+	chr16	67175603	67183952	KIAA0895L|ENST00000561621.5	-	67175603,67178009,67178198,67179429,67179814,67180040,67181557,67183261	67176975,67178097,67178504,67179562,67179958,67180666,67181697,67183952	0.900000
vagina_female_adult_53_years	chr10	30999472	30999520	30999519	-	High_confidence	10	11	29	1.294997	4.637538	chr10	30999340	30999737	LINE|L2|L2c	+	chr10	30844633	30999517	ZNF438|NM_001143769.1	-	30844633,30848530,30875330,30876997,30908932,30941574,30984368,30999337	30845573,30850367,30875509,30877065,30909015,30941651,30984426,30999517	0.551724
vagina_female_adult_53_years	chr11	130199047	130199048	130199047	+	High_confidence	15	15	20	0.893101	3.346439	chr11	130199074	130199268	DNA|hAT-Tip100|MER91A	+	chr11	130198876	130210376	STRG.70398.6	+	130198876,130208409,130209441	130200137,130208684,130210376	1.000000
vagina_female_adult_53_years	chr1	166850222	166850307	166850222	+	RAMPAGE_only	10	12	78	3.483095	5.136687	chr1	166850043	166850335	DNA|TcMar-Tc2|Kanga2_a	+	chr1	166847407	166856092	STRG.6154.3	+	166847407,166848937,166849787	166847592,166849733,166856092	1.000000
vagina_female_adult_53_years	chr5	140651849	140651868	140651849	+	RAMPAGE_only	9	9	28	1.250342	4.307355	chr5	140651884	140651935	DNA|hAT-Charlie|MER5A	+	chr5	140648093	140654727	IK|ENST00000502899.2	+	140648093,140648470,140651713,140652087,140652976,140653937,140654515,140654680	140648162,140648537,140651806,140652147,140653144,140654052,140654586,140654727	1.000000
vagina_female_adult_53_years	chr5	148123679	148123719	148123688	+	RAMPAGE_only	2	2	10	0.446551	3.321928	chr5	148123584	148123718	LINE|CR1|L3	+	chr5	148064002	148137289	STRG.36845.4	+	148064002,148065346,148070322,148072147,148086404,148088541,148089493,148091164,148094353,148095817,148097866,148099233,148100453,148101354,148101780,148104951,148107036,148108752,148111767,148112867,148114361,148116369,148118436,148118985,148120008,148120294,148123832,148124764,148126982,148131258,148133796,148136982	148064099,148065372,148070450,148072220,148086532,148088605,148089621,148091228,148094481,148095905,148097994,148099315,148100581,148101436,148101908,148105000,148107164,148108837,148111895,148112934,148114489,148116466,148118564,148119058,148120136,148120391,148123960,148125850,148127079,148131389,148133887,148137289	0.900000
vagina_female_adult_53_years	chr19	58306086	58306087	58306086	+	High_confidence	4	4	7	0.312585	2.521641	chr19	58306117	58306453	LTR|ERVK|HERVK3-int	+	chr19	58305386	58315203	STRG.99892.4	+	58305386,58306087,58312165	58305445,58306216,58315203	0.714286
vagina_female_adult_53_years	chr3	54633613	54633649	54633613	-	RAMPAGE_only	6	6	15	0.669826	3.506891	chr3	54633393	54633720	LTR|ERV1|MER61A	-	chr3	54632121	54639857	ESRG|ENST00000583516.1	-	54632121,54633558,54634460,54637690	54632807,54633740,54634565,54639857	0.800000
vagina_female_adult_53_years	chr6	36914664	36914687	36914686	+	RAMPAGE_only	7	8	22	0.982411	3.788755	chr6	36914707	36914996	SINE|Alu|AluSz6	+	chr6	36898168	36928964	STRG.39526.3	+	36898168,36899425,36902220,36914283,36914553,36916444,36919577,36923346	36898225,36899633,36902434,36914435,36914693,36916574,36919701,36928964	0.863636
vagina_female_adult_53_years	chr19	53558451	53558452	53558451	+	RAMPAGE_only	8	9	10	0.446551	3.321928	chr19	53557977	53558807	LTR|ERVL|MER21A	-	chr19	53557300	53560782	STRG.99723.18	+	53557300,53559335	53558909,53560782	0.900000
vagina_female_adult_53_years	chr3	128104807	128104823	128104807	-	RAMPAGE_only	1	1	7	0.312585	2.584963	chr3	128104760	128104822	LINE|CR1|L3	-	chr3	128064781	128101619	RUVBL1|ENST00000472125.5	-	128064781,128097299,128098881,128100594,128101558	128065220,128097498,128098945,128100744,128101619	0.714286
vagina_female_adult_53_years	chr12	47753934	47753962	47753961	+	RAMPAGE_only	2	2	6	0.267930	2.584963	chr12	47753918	47754017	SINE|MIR|MIR3	-	chr12	47758577	47780307	SLC48A1|ENST00000547002.5	+	47758577,47760215,47772169,47779027,47780144	47758660,47760401,47772320,47779195,47780307	0.500000
vagina_female_adult_53_years	chr4	11336762	11336783	11336762	+	RAMPAGE_only	13	14	67	2.991889	4.383441	chr4	11336585	11336947	LTR|ERVL-MaLR|MLT1O	+	chr4	11347250	11347935	STRG.27227.1	+	11347250	11347935	0.611940
vagina_female_adult_53_years	chr7	119184365	119184366	119184365	+	High_confidence	5	7	7	0.312585	2.521641	chr7	119184156	119184707	LTR|ERVL|MLT2A2	+	chr7	119184318	119184637	STRG.50562.1	+	119184318	119184637	0.571429
vagina_female_adult_53_years	chr8	26366349	26366396	26366395	+	RAMPAGE_only	15	16	62	2.768614	4.292332	chr8	26366387	26366427	LINE|CR1|L3	-	chr8	26361089	26371129	PPP2R2A|ENST00000517754.1	+	26361089,26362683,26366314,26370133	26361151,26363890,26366406,26371129	0.919355
vagina_female_adult_53_years	chr3	52482542	52482557	52482542	+	RAMPAGE_only	2	2	7	0.312585	2.584963	chr3	52482568	52482694	DNA|TcMar-Tc2|Kanga1c	+	chr3	52455616	52493068	STRG.21382.2	+	52455616,52457842,52458661,52470858,52471813,52472302,52473733,52476446,52477573,52478096,52478448,52479748,52480183,52480878,52485777,52487195,52489335,52490074,52490704,52491351,52491871	52455734,52457926,52458844,52470907,52471977,52472398,52473829,52476599,52477642,52478282,52478577,52479862,52480295,52484637,52485827,52488605,52489678,52490231,52490833,52491513,52493068	0.857143
vagina_female_adult_53_years	chr4	94234014	94234073	94234040	+	RAMPAGE_only	5	6	31	1.384307	4.444188	chr4	94234038	94234182	SINE|MIR|MIR3	-	chr4	94208083	94289899	SMARCAD1|ENST00000394961.6	+	94208083,94208345,94213034,94226118,94233953,94236951,94240905,94249653,94250751,94252615,94264706,94270727,94273616,94274737,94274889,94276338,94277021,94278421,94278615,94278922,94280591,94281471,94283120,94284959,94289472	94208242,94208584,94213152,94226296,94234122,94237018,94241006,94249755,94250833,94253007,94264906,94270818,94273716,94274797,94274965,94276474,94277159,94278517,94278733,94279050,94280780,94281590,94283303,94285069,94289899	0.935484
vagina_female_adult_53_years	chr11	12195916	12195942	12195941	+	High_confidence	5	6	13	0.580516	3.418296	chr11	12195751	12196592	LINE|L2|L2	-	chr11	12195944	12197811	MICAL2|ENST00000532166.5	+	12195944,12197486	12196200,12197811	0.538462
vagina_female_adult_53_years	chr1	150457342	150457374	150457365	+	RAMPAGE_only	2	2	11	0.491206	3.321928	chr1	150457314	150457394	DNA|hAT-Ac|OldhAT1	+	chr1	150364710	150473556	RPRD2|ENST00000369068.4	+	150364710,150417595,150440922,150441880,150443230,150444250,150446225,150457287,150460059,150464526,150470560	150364919,150417725,150441023,150441958,150443283,150444377,150446401,150457570,150460317,150464727,150473556	0.909091
vagina_female_adult_53_years	chr10	125885454	125885460	125885454	-	RAMPAGE_only	5	9	15	0.669826	3.182006	chr10	125885254	125885744	LTR|ERVL-MaLR|MLT1D	+	chr10	125836339	125881315	DHX32|NM_018180.2	-	125836339,125838205,125839000,125840846,125841742,125852292,125852542,125853960,125859602,125866989,125880542	125836855,125838387,125839188,125840996,125841934,125852451,125852642,125854203,125859975,125867183,125881315	0.600000
vagina_female_adult_53_years	chr2	9422726	9422758	9422726	-	High_confidence	3	3	15	0.669826	3.640224	chr2	9422725	9422939	SINE|MIR|MIRb	-	chr2	9405680	9422660	ITGB1BP1|NM_001319068.1	-	9405680,9407448,9408112,9412268,9414177,9418625,9422478	9406905,9407598,9408205,9412405,9414256,9418732,9422660	0.800000
vagina_female_adult_53_years	chr5	176411458	176411459	176411458	-	RAMPAGE_only	228	262	326	14.557551	6.628899	chr5	176411393	176411727	LINE|L2|L2a	+	chr5	176392648	176416539	CLTB|ENST00000510734.5	-	176392648,176397606,176397929,176406156,176410256,176416176	176392945,176397718,176398047,176406708,176410303,176416539	0.699387
vagina_female_adult_53_years	chr15	71546956	71546973	71546972	+	High_confidence	3	4	9	0.401896	2.947703	chr15	71546806	71547005	SINE|MIR|MIR3	-	chr15	71547201	71783383	THSD4|NM_001286429.1	+	71547201,71660529,71728548,71731120,71737731,71745105,71746837,71748420,71757901,71765019,71771063,71777231	71547481,71660734,71728724,71731217,71738007,71745235,71747042,71748594,71758075,71765199,71771208,71783383	0.666667
vagina_female_adult_53_years	chr18	63486574	63486672	63486671	+	High_confidence	14	14	41	1.830858	4.680027	chr18	63486608	63486820	DNA|hAT-Charlie|MER20	+	chr18	63486676	63489463	SERPINB5|ENST00000588986.1	+	63486676,63489346	63487083,63489463	0.731707
vagina_female_adult_53_years	chr9	39810023	39810064	39810033	-	High_confidence	7	7	23	1.027067	4.011365	chr9	39810007	39810233	LTR|ERV1|MER90	-	chr9	39807694	39810013	GLIDR|ENST00000627065.1	-	39807694,39809485,39809730	39808761,39809615,39810013	0.652174
vagina_female_adult_53_years	chr6	56515724	56515739	56515738	-	RAMPAGE_only	5	5	10	0.446551	2.947703	chr6	56515735	56515796	LINE|L2|L2b	+	chr6	56494064	56541572	DST|ENST00000340834.9	-	56494064,56497378,56497855,56501079,56501519,56503996,56506442,56506666,56508528,56509641,56511196,56515449,56517197,56517500,56526360,56527492,56528840,56529447,56529973,56532343,56535121,56536778,56540279	56494180,56497507,56498053,56501235,56501693,56504098,56506544,56506789,56508755,56509873,56511400,56515668,56517305,56517620,56526567,56527734,56528925,56529774,56530133,56532510,56535292,56536940,56541572	0.600000
vagina_female_adult_53_years	chr18	31093567	31093593	31093567	-	High_confidence	6	7	23	1.027067	4.001823	chr18	31093142	31093519	LINE|L1|L1PA10	-	chr18	31065973	31092749	STRG.95403.5	-	31065973,31068298,31070725,31071604,31074682,31079846,31080095,31082237,31082925,31086575,31087668,31089438,31091027	31068212,31069151,31070850,31071841,31074907,31079989,31080352,31082423,31083060,31086742,31087813,31089594,31092749	0.608696
vagina_female_adult_53_years	chr7	134432435	134432436	134432435	-	High_confidence	9	9	13	0.580516	3.392747	chr7	134432177	134432666	DNA|hAT-Charlie|MER1A	-	chr7	134418470	134432453	AC009275.1|ENST00000609619.1	-	134418470,134432313	134418974,134432453	1.000000
vagina_female_adult_53_years	chr1	61856235	61856236	61856235	+	RAMPAGE_only	12	12	17	0.759136	3.734522	chr1	61856274	61856495	SINE|MIR|MIR	+	chr1	61854872	61871330	STRG.3221.8	+	61854872,61861550,61864237,61871231	61856239,61861667,61864633,61871330	1.000000
vagina_female_adult_53_years	chr6	159681166	159681266	159681226	-	RAMPAGE_only	25	25	95	4.242231	4.928934	chr6	159681139	159681937	LTR|ERV1|LTR39	+	chr6	159679063	159693241	SOD2|ENST00000546260.5	-	159679063,159684853,159688125,159692530,159693144	159682638,159685033,159688242,159692863,159693241	1.000000
vagina_female_adult_53_years	chr15	92939367	92939407	92939378	+	High_confidence	4	4	31	1.384307	4.280226	chr15	92939359	92939489	DNA|hAT-Charlie|MER5A	+	chr15	92939653	92949228	CHD2|ENST00000637613.1	+	92939653,92941821,92942842,92944414,92945820,92946037,92946247,92948951	92939718,92941955,92943068,92944515,92945865,92946082,92946340,92949228	0.709677
vagina_female_adult_53_years	chr14	49771594	49771673	49771672	+	RAMPAGE_only	6	6	25	1.116377	4.133661	chr14	49771716	49772002	SINE|Alu|AluSz	+	chr14	49768800	49778259	KLHDC2|ENST00000553538.5	+	49768800,49771593,49774560,49777838,49778177	49769091,49771673,49774678,49777954,49778259	0.600000
vagina_female_adult_53_years	chr20	2325858	2325863	2325862	+	RAMPAGE_only	5	6	9	0.401896	2.750000	chr20	2325789	2325878	SINE|MIR|MIR3	+	chr20	2296000	2341078	TGM3|ENST00000381458.5	+	2296000,2309656,2310177,2311010,2312897,2317067,2317349,2325848,2328119,2332001,2335115,2339853,2340433	2296070,2309830,2310417,2311129,2313026,2317245,2317485,2325952,2328365,2332310,2335273,2339987,2341078	0.777778
vagina_female_adult_53_years	chr1	19093547	19093574	19093547	-	High_confidence	5	5	14	0.625171	3.546594	chr1	19093526	19093673	LINE|L2|L2	+	chr1	19092732	19093440	UBR4|ENST00000492606.1	-	19092732,19093312	19092918,19093440	0.857143
vagina_female_adult_53_years	chr11	47172288	47172314	47172301	-	High_confidence	3	3	15	0.669826	3.378783	chr11	47172030	47172274	SINE|MIR|MIRb	-	chr11	47166267	47171557	ARFGAP2|ENST00000527776.5	-	47166267,47166505,47166759,47167908,47168122,47171452	47166386,47166599,47166886,47168043,47168251,47171557	0.866667
vagina_female_adult_53_years	chr1	52493823	52493863	52493856	-	RAMPAGE_only	4	4	16	0.714481	3.202820	chr1	52493802	52494102	SINE|Alu|AluJo	-	chr1	52462177	52525930	TUT4|ENST00000371541.5	-	52462177,52465069,52468180,52471951,52474831,52477707,52481422,52481803,52488908,52490731,52493610,52495426,52497005,52509595,52515890,52525562	52463777,52465173,52468267,52472102,52475535,52477882,52481635,52481923,52489035,52490801,52493662,52495515,52497183,52509712,52516054,52525930	0.750000
vagina_female_adult_53_years	chr11	123061174	123061322	123061254	-	High_confidence	130	137	530	23.667185	6.226948	chr11	123061209	123061308	SINE|tRNA|LFSINE_Vert	-	chr11	123057700	123061331	HSPA8|ENST00000526110.5	-	123057700,123058251,123058631,123059058,123059472,123060115,123060592,123061119	123057919,123058484,123058830,123059261,123060028,123060211,123060798,123061331	0.884906
vagina_female_adult_53_years	chr12	7115135	7115159	7115158	+	RAMPAGE_only	5	5	14	0.625171	3.392747	chr12	7114990	7115194	LINE|L2|L2b	+	chr12	7108307	7121851	C1RL-AS1|NR_026947.1	+	7108307,7108672,7110063,7110297,7111024,7112006,7115129,7115385,7118898,7119499,7120505,7121711	7108481,7108947,7110147,7110572,7111606,7112064,7115219,7118677,7119026,7119553,7120625,7121851	0.500000
vagina_female_adult_53_years	chr10	110885060	110885092	110885091	+	High_confidence	11	13	30	1.339652	4.773557	chr10	110884825	110885095	SINE|Alu|AluJr4	-	chr10	110885252	110898122	PDCD4|ENST00000462577.5	+	110885252,110887664,110890599,110894090,110894411,110895947,110898027	110885366,110887814,110890670,110894198,110894522,110896087,110898122	0.533333
vagina_female_adult_53_years	chr7	102822456	102822461	102822458	-	RAMPAGE_only	3	5	12	0.535861	3.584963	chr7	102822261	102822636	LTR|ERVL-MaLR|MLT1A	-	chr7	102813237	102816271	FBXL13|ENST00000480422.1	-	102813237,102814333,102816189	102813531,102814416,102816271	0.833333
vagina_female_adult_53_years	chr7	64917060	64917109	64917108	+	RAMPAGE_only	3	4	17	0.759136	3.452820	chr7	64917079	64917228	DNA|hAT-Charlie|MER5A1	+	chr7	64903287	64930966	ZNF273|ENST00000395375.3	+	64903287,64917029,64917580,64918196,64927653	64903419,64917118,64917707,64918292,64930966	0.941176
vagina_female_adult_53_years	chr21	29077437	29077511	29077486	+	High_confidence	17	17	39	1.741548	4.238747	chr21	29076387	29077682	LTR|ERV1|LTR12C	-	chr21	29077495	29102640	MAP3K7CL|ENST00000492930.5	+	29077495,29085812,29091500,29091667,29092438,29102507	29077713,29085917,29091576,29091761,29092581,29102640	0.794872
vagina_female_adult_53_years	chr1	1848006	1848018	1848006	-	RAMPAGE_only	2	2	10	0.446551	2.947703	chr1	1846859	1848097	DNA|TcMar-Tigger|Tigger2	+	chr1	1785405	1839636	STRG.172.3	-	1785405,1787321,1789052,1790394,1793244,1804418,1806474,1815755,1817836,1825396,1839189,1839628	1787053,1787437,1789269,1790596,1793311,1804581,1806538,1815862,1817875,1825499,1839238,1839636	0.700000
vagina_female_adult_53_years	chr5	52745584	52745600	52745599	-	RAMPAGE_only	4	5	9	0.401896	2.500000	chr5	52745284	52745728	LTR|ERVL|MLT2A1	-	chr5	52675192	52788026	AC022126.1|ENST00000502995.1	-	52675192,52685604,52785534,52787917	52675532,52685690,52785592,52788026	0.555556
vagina_female_adult_53_years	chr2	71024039	71024056	71024039	+	High_confidence	3	3	7	0.312585	2.807355	chr2	71020399	71024471	LTR|ERV1|HERVE-int	+	chr2	71024126	71029893	OR7E91P|ENST00000642062.1	+	71024126,71024305,71028915	71024200,71024451,71029893	0.857143
vagina_female_adult_53_years	chr6	7577562	7577571	7577562	+	RAMPAGE_only	23	25	38	1.696892	4.649115	chr6	7577351	7577621	SINE|Alu|AluSp	-	chr6	7541616	7586572	DSP|ENST00000418664.2	+	7541616,7555717,7558115,7559225,7562651,7563735,7565358,7566376,7567353,7567780,7568436,7569185,7570436,7571382,7571841,7574085,7574656,7575294,7576293,7576958,7577778,7578463,7579274,7582641	7542085,7555820,7558264,7559400,7562780,7563786,7565520,7566481,7567449,7567906,7568589,7569340,7570563,7571584,7572068,7574252,7574795,7575488,7576456,7577042,7577886,7578562,7579772,7586572	0.657895
vagina_female_adult_53_years	chr3	197613288	197613303	197613288	-	RAMPAGE_only	3	5	11	0.491206	2.845351	chr3	197613253	197613977	LTR|ERV1|LTR8A	-	chr3	197612521	197627871	STRG.26473.2	-	197612521,197615563,197619739,197621703,197622186,197623219,197624111,197627779	197613318,197615685,197619888,197621868,197622330,197623382,197624197,197627871	0.545455
vagina_female_adult_53_years	chr1	174874418	174874439	174874418	+	High_confidence	5	5	10	0.446551	2.947703	chr1	174874333	174874445	SINE|MIR|MIR3	-	chr1	174874470	174982900	RABGAP1L|ENST00000465412.5	+	174874470,174877391,174957456,174969276,174976077,174978806,174982833	174874506,174877605,174957549,174969387,174976182,174978890,174982900	0.500000
vagina_female_adult_53_years	chr11	72111411	72111433	72111411	-	High_confidence	4	5	11	0.491206	3.121928	chr11	72111397	72111582	SINE|MIR|MIRb	+	chr11	72107158	72111443	ANAPC15|ENST00000543050.5	-	72107158,72110087,72110543,72111156,72111411	72107605,72110225,72110603,72111286,72111443	0.727273
vagina_female_adult_53_years	chr2	29175330	29175365	29175333	+	High_confidence	7	7	25	1.116377	4.483856	chr2	29175307	29175605	LINE|CR1|L3	+	chr2	29175362	29181758	CLIP4|ENST00000481628.1	+	29175362,29181571	29175600,29181758	0.840000
vagina_female_adult_53_years	chr8	39017146	39017147	39017146	+	High_confidence	4	4	7	0.312585	2.521641	chr8	39017133	39017167	SINE|MIR|MIRc	-	chr8	39017035	39021713	ADAM9|ENST00000481058.1	+	39017035,39018852,39021642	39017414,39018918,39021713	0.857143
vagina_female_adult_53_years	chr16	65053872	65053880	65053872	-	RAMPAGE_only	3	3	8	0.357241	2.521641	chr16	65053806	65053885	DNA|hAT-Ac|OldhAT1	+	chr16	65004708	65059678	CDH11|ENST00000562712.5	-	65004708,65053803,65059523	65005041,65053928,65059678	0.625000
vagina_female_adult_53_years	chr11	57814045	57814120	57814045	+	High_confidence	10	10	57	2.545339	4.905046	chr11	57814032	57814187	SINE|Alu|AluJr4	+	chr11	57813916	57815481	CTNND1|ENST00000525821.1	+	57813916,57815393	57814373,57815481	0.859649
vagina_female_adult_53_years	chr8	2726955	2726968	2726962	+	High_confidence	6	6	15	0.669826	3.640224	chr8	2726965	2727484	LINE|L1|L1PBa1	+	chr8	2727317	2822482	AC246817.1|ENST00000520024.1	+	2727317,2804585,2808366,2819266,2822393	2727493,2804709,2808434,2819419,2822482	0.600000
vagina_female_adult_53_years	chr19	10555125	10555156	10555125	-	RAMPAGE_only	17	18	39	1.741548	4.199132	chr19	10554992	10555092	SINE|MIR|MIRb	-	chr19	10553090	10559936	KRI1|ENST00000537363.5	-	10553090,10555086,10555284,10557551,10557768,10557971,10558163,10559358,10559809	10554281,10555185,10555349,10557682,10557895,10558060,10558239,10559708,10559936	1.000000
vagina_female_adult_53_years	chrX	19349942	19349970	19349956	+	RAMPAGE_only	3	3	13	0.580516	3.251629	chrX	19349930	19350023	DNA|hAT-Ac|OldhAT1	-	chrX	19343967	19353327	PDHA1|ENST00000379805.3	+	19343967,19349311,19349936,19351280,19353081	19344094,19349371,19350110,19351407,19353327	0.769231
vagina_female_adult_53_years	chr6	3719799	3719835	3719799	-	High_confidence	2	2	10	0.446551	2.725481	chr6	3719558	3721329	LTR|ERV1|LTR12C	-	chr6	3719379	3720085	STRG.38081.1	-	3719379	3720085	0.800000
vagina_female_adult_53_years	chr3	152335094	152335136	152335094	+	RAMPAGE_only	4	4	15	0.669826	3.182006	chr3	152335017	152335180	DNA|DNA|UCON8	+	chr3	152332188	152432917	STRG.24771.16	+	152332188,152414940,152432716	152338673,152415111,152432917	0.933333
vagina_female_adult_53_years	chr2	36912653	36912698	36912653	-	High_confidence	2	2	11	0.491206	3.121928	chr2	36911611	36912930	LINE|L2|L2c	+	chr2	36912174	36912962	STRG.10368.1	-	36912174	36912962	0.818182
vagina_female_adult_53_years	chr8	12522768	12522814	12522813	+	RAMPAGE_only	6	6	22	0.982411	4.011365	chr8	12520774	12523594	LTR|ERV1|HERVS71-int	-	chr8	12437012	12566845	LOC100506990|NR_040092.1	+	12437012,12438163,12440999,12444755,12530942,12565885	12437710,12438511,12441061,12444894,12531031,12566845	0.681818
vagina_female_adult_53_years	chr12	13201164	13201216	13201164	+	RAMPAGE_only	18	21	61	2.723959	5.024131	chr12	13201148	13201430	SINE|Alu|AluJo	+	chr12	13196785	13214818	STRG.71482.4	+	13196785,13213478,13213680,13214533	13211588,13213575,13213821,13214818	1.000000
vagina_female_adult_53_years	chr8	129786056	129786089	129786075	-	High_confidence	2	2	8	0.357241	2.750000	chr8	129786052	129786345	SINE|Alu|AluSg7	+	chr8	129748195	129786888	GSDMC|ENST00000276708.8	-	129748195,129749451,129749989,129750430,129751541,129751861,129752105,129752697,129760544,129762625,129765627,129776101,129777367,129786010	129748740,129749525,129750119,129750570,129751568,129751891,129752147,129752820,129760589,129762731,129765793,129776285,129777591,129786888	1.000000
vagina_female_adult_53_years	chr19	41720781	41720820	41720781	+	RAMPAGE_only	3	3	11	0.491206	3.095795	chr19	41720500	41720799	SINE|Alu|AluSx3	-	chr19	41709715	41729335	STRG.98867.5	+	41709715,41714970,41715695,41717454,41718127,41719929,41720921,41727233,41729183	41710039,41715249,41715904,41717733,41718382,41720208,41721176,41727352,41729335	0.909091
vagina_female_adult_53_years	chr12	64346311	64346312	64346311	-	RAMPAGE_only	6	6	7	0.312585	2.584963	chr12	64346076	64346520	LTR|ERVL|MLT2A1	-	chr12	64266982	64390565	C12orf56|NM_001170633.1	-	64266982,64270535,64274900,64275297,64277679,64284663,64285953,64303634,64312678,64318574,64330959,64352893,64390313	64267288,64270714,64274975,64275372,64277803,64284753,64286060,64303779,64312752,64318980,64331032,64353056,64390565	0.714286
vagina_female_adult_53_years	chr15	34588450	34588453	34588450	-	High_confidence	5	8	13	0.580516	3.700440	chr15	34588272	34588649	LTR|ERVL-MaLR|THE1D	-	chr15	34525281	34588503	GOLGA8B|ENST00000569100.5	-	34525281,34527921,34528188,34528371,34528606,34529017,34529661,34529966,34530181,34531268,34531474,34531647,34531960,34532845,34535864,34537343,34544857,34545377,34546934,34551137,34552894,34553744,34588390	34527834,34528077,34528289,34528472,34528750,34529274,34529749,34530074,34530268,34531378,34531559,34531695,34531999,34534173,34535989,34537647,34544953,34545426,34546982,34551276,34553091,34553956,34588503	0.692308
vagina_female_adult_53_years	chr16	63618045	63618046	63618045	-	High_confidence	33	37	39	1.741548	4.777021	chr16	63617691	63618801	LTR|ERV1|MER52A	-	chr16	63314263	63618046	AC138305.1|ENST00000568932.5	-	63314263,63334599,63531224,63617692	63314322,63334667,63531304,63618046	0.692308
vagina_female_adult_53_years	chr8	17692204	17692242	17692241	-	High_confidence	5	5	29	1.294997	4.134336	chr8	17692219	17692309	LTR|ERVL-MaLR|MLT1J	+	chr8	17649879	17692226	MTUS1|ENST00000518713.5	-	17649879,17653185,17653424,17654560,17655862,17675185,17684327,17691304,17691968	17649962,17653281,17653498,17654666,17656065,17675252,17684542,17691364,17692226	0.586207
vagina_female_adult_53_years	chr11	120118858	120118891	120118890	-	RAMPAGE_only	3	3	6	0.267930	2.584963	chr11	120118479	120119046	LINE|L2|L2b	+	chr11	120115363	120123032	STRG.70015.13	-	120115363,120118222,120122953	120115414,120120665,120123032	1.000000
vagina_female_adult_53_years	chr12	126772230	126772251	126772230	-	High_confidence	7	7	22	0.982411	4.186704	chr12	126772157	126772431	LTR|ERV1|LTR12F	-	chr12	126752340	126772262	LINC00944|ENST00000536517.1	-	126752340,126760931,126772078	126752451,126761057,126772262	0.909091
vagina_female_adult_53_years	chr2	28778470	28778511	28778510	+	RAMPAGE_only	6	6	24	1.071722	3.918296	chr2	28778256	28778769	LTR|ERVL-MaLR|MLT1F2	-	chr2	28751852	28802940	PPP1CB|ENST00000395366.2	+	28751852,28776850,28778808,28781737,28783906,28788657,28793862,28799198	28752176,28776982,28779039,28781842,28783978,28788809,28793997,28802940	0.625000
vagina_female_adult_53_years	chr12	1167987	1167988	1167987	+	RAMPAGE_only	4	4	6	0.267930	2.584963	chr12	1167705	1168013	SINE|Alu|AluSx3	-	chr12	1083572	1244956	ERC1|ENST00000536573.6	+	1083572,1104749,1110191,1112214,1115865,1141619,1180539,1181924,1183280,1189858,1236768,1244542	1083580,1104824,1110347,1112307,1116033,1141787,1180677,1182065,1183421,1190052,1236904,1244956	1.000000
vagina_female_adult_53_years	chr9	133276657	133276665	133276659	-	RAMPAGE_only	3	4	9	0.401896	2.750000	chr9	133276496	133276806	LINE|L1|L1MB3	+	chr9	133250400	133275219	ABO|ENST00000453660.4	-	133250400,133257408,133258096,133259818,133261317,133262098,133275161	133256356,133257542,133258132,133259866,133261374,133262168,133275219	0.666667
vagina_female_adult_53_years	chr22	39021125	39021182	39021181	+	High_confidence	6	6	26	1.161032	3.863465	chr22	39021106	39021405	SINE|Alu|AluSg	-	chr22	39021112	39033276	APOBEC3D|ENST00000216099.12	+	39021112,39022821,39025069,39025556,39029362,39031693,39032197	39021536,39023014,39025349,39025671,39029519,39031973,39033276	0.961538
vagina_female_adult_53_years	chr3	53927691	53927734	53927691	+	RAMPAGE_only	14	14	25	1.116377	4.483856	chr3	53921747	53927805	LINE|L1|L1PA2	-	chr3	54038488	54053315	STRG.21478.1	+	54038488,54052901	54038637,54053315	0.600000
vagina_female_adult_53_years	chr21	16630908	16630909	16630908	+	High_confidence	4	4	6	0.267930	2.584963	chr21	16630604	16631044	LTR|ERVL?|LTR89	-	chr21	16630826	16640633	MIR99AHG|ENST00000413645.1	+	16630826,16640229	16630972,16640633	0.666667
vagina_female_adult_53_years	chr19	46350849	46350851	46350849	+	RAMPAGE_only	5	7	10	0.446551	2.725481	chr19	46350674	46350866	SINE|MIR|MIRb	-	chr19	46347107	46390852	PPP5C|ENST00000391919.1	+	46347107,46353747,46375603,46376452,46383779,46384803,46387092,46387365,46388407,46388552,46390050,46390283	46347217,46353989,46375751,46376574,46383878,46384909,46387235,46387453,46388448,46388731,46390132,46390852	0.900000
vagina_female_adult_53_years	chr6	113873322	113873347	113873342	-	High_confidence	5	5	21	0.937756	3.932138	chr6	113873034	113873571	LTR|ERVL-MaLR|MLT1G	-	chr6	113868012	113873347	LINC01268|NR_038863.2	-	113868012,113870668,113872993	113870343,113870734,113873347	0.619048
vagina_female_adult_53_years	chr9	13386129	13386133	13386132	+	RAMPAGE_only	7	7	12	0.535861	3.251629	chr9	13385937	13386311	LTR|ERVL-MaLR|THE1B	+	chr9	13446490	13487511	AL583785.1|ENST00000428006.2	+	13446490,13487102	13446593,13487511	0.833333
vagina_female_adult_53_years	chr2	68679880	68679913	68679880	+	High_confidence	2	2	10	0.446551	2.921928	chr2	68677861	68680074	LINE|L1|L1PA3	-	chr2	68679845	68787922	ARHGAP25|ENST00000481684.5	+	68679845,68710504,68757637,68775220,68782232,68787839	68680095,68710698,68757730,68775420,68782320,68787922	0.500000
vagina_female_adult_53_years	chr10	63610076	63610118	63610076	+	RAMPAGE_only	3	3	13	0.580516	3.392747	chr10	63609919	63610126	LINE|L1|L1ME2z	+	chr10	63598045	63620822	REEP3|ENST00000634963.1	+	63598045,63599169,63599669,63610186,63619654,63620812	63598144,63599283,63599712,63610334,63619800,63620822	0.769231
vagina_female_adult_53_years	chr21	33945809	33945810	33945809	-	RAMPAGE_only	30	30	30	1.339652	3.989898	chr21	33945808	33945927	SINE|Alu|FLAM_C	+	chr21	33903452	33915768	ATP5PO|ENST00000491703.5	-	33903452,33903934,33906448,33909081,33912288,33914449	33903639,33904021,33907453,33909211,33912399,33915768	1.000000
vagina_female_adult_53_years	chr3	47638840	47638866	47638865	-	RAMPAGE_only	2	2	9	0.401896	3.000000	chr3	47638835	47639155	LINE|L1|L1ME3A	+	chr3	47585887	47781915	SMARCC1|NM_003074.3	-	47585887,47590660,47610065,47622206,47635189,47636021,47638724,47661293,47662333,47670657,47675474,47676628,47678197,47680436,47686048,47689386,47693240,47701277,47706408,47710682,47714414,47720665,47729024,47736033,47738028,47745907,47772816,47781602	47588306,47590837,47610327,47622341,47635344,47636136,47638780,47661455,47662592,47670717,47675588,47676782,47678311,47680508,47686170,47689424,47693300,47701402,47706530,47710808,47714490,47720735,47729094,47736126,47738110,47745993,47772936,47781915	0.777778
vagina_female_adult_53_years	chr11	65431712	65432187	65431833	+	RAMPAGE_only	50	61	914	40.814730	7.081361	chr11	65430888	65432241	LINE|L1|L1MB2	-	chr11	65423637	65445540	STRG.67745.5	+	65423637,65437228	65437184,65445540	0.997812
vagina_female_adult_53_years	chr6	144533090	144533106	144533090	+	RAMPAGE_only	4	5	15	0.669826	3.906891	chr6	144533061	144533142	LTR|Gypsy|MamGypsy2-LTR	+	chr6	144291828	144853034	UTRN|ENST00000367545.7	+	144291828,144403122,144421877,144423548,144423985,144426286,144428777,144429580,144435934,144437564,144438744,144440351,144444280,144447210,144447601,144448599,144451369,144453781,144458769,144459173,144461196,144462653,144473719,144474603,144479811,144482208,144485384,144487547,144488672,144490070,144490928,144493300,144499256,144510943,144513908,144514649,144516228,144516810,144521979,144523015,144531051,144533084,144537581,144539293,144542794,144548639,144550964,144554687,144557156,144577098,144678405,144700086,144730356,144748245,144751805,144754719,144757928,144771906,144774289,144781921,144789193,144793833,144797823,144803035,144820881,144827347,144827610,144828789,144835779,144836300,144839172,144840739,144846804,144850988	144291907,144403184,144421970,144423626,144424078,144426459,144428893,144429741,144436138,144437746,144438895,144440471,144444382,144447318,144447781,144448769,144451493,144453869,144459011,144459354,144461342,144462866,144473833,144474759,144479982,144482388,144485519,144487697,144488834,144490199,144491102,144493456,144499427,144511123,144514037,144514820,144516387,144516948,144522171,144523188,144531202,144533260,144537717,144539443,144542870,144548854,144551082,144554893,144557311,144577288,144678578,144700243,144730486,144748514,144751952,144754798,144757989,144771968,144774364,144782123,144789279,144793991,144797990,144803147,144821018,144827386,144827676,144828855,144835938,144836541,144839284,144840832,144846827,144853034	1.000000
vagina_female_adult_53_years	chr3	169447782	169447784	169447782	+	High_confidence	2	4	7	0.312585	2.521641	chr3	169447527	169447947	LINE|L2|L2c	-	chr3	169447866	169477052	LOC105374205|NR_134932.1	+	169447866,169463943,169467033,169470144,169476885	169447935,169464122,169467100,169470197,169477052	0.571429
vagina_female_adult_53_years	chr11	13419630	13419730	13419729	-	RAMPAGE_only	6	6	33	1.473617	4.265320	chr11	13419682	13419763	LINE|L1|X9_LINE	+	chr11	13405548	13440208	BTBD10|ENST00000525661.5	-	13405548,13413529,13417157,13419459,13421641,13440098	13405856,13413650,13417260,13419745,13421838,13440208	0.939394
vagina_female_adult_53_years	chr10	65570515	65570522	65570519	+	High_confidence	3	3	11	0.491206	3.459432	chr10	65570386	65570726	LTR|ERV1|MER61A	+	chr10	65570512	65585802	LINC01515|ENST00000620859.4	+	65570512,65571424,65572934,65579882,65585484	65570545,65571579,65573056,65579948,65585802	0.909091
vagina_female_adult_53_years	chr5	96979754	96979800	96979754	+	RAMPAGE_only	2	2	12	0.535861	2.751629	chr5	96979717	96979816	LINE|RTE-BovB|MamRTE1	+	chr5	96958451	97029411	LNPEP|NM_175920.3	+	96958451,96979137,96985079,96986538,96993014,96993816,96996389,96998013,97003414,97006072,97006426,97013647,97014938,97022299,97024520,97026616,97027732,97028401	96958776,96979978,96985218,96986670,96993135,96993971,96996503,96998145,97003546,97006233,97006515,97013831,97015095,97022484,97024682,97026757,97027814,97029411	1.000000
vagina_female_adult_53_years	chr5	146228880	146228881	146228880	+	RAMPAGE_only	8	9	11	0.491206	3.095795	chr5	146228592	146228912	SINE|Alu|AluJr	-	chr5	146223325	146314897	STRG.36761.3	+	146223325,146228945,146229716,146230653,146233449,146237297,146254942,146258448,146260744,146261509,146263490,146267648,146269206,146269419,146270953,146271482,146314895	146223527,146229037,146229910,146230917,146233743,146237432,146255092,146258593,146260898,146261806,146263631,146267768,146269281,146269584,146271058,146271674,146314897	1.000000
vagina_female_adult_53_years	chr16	20676161	20676202	20676161	-	High_confidence	14	19	38	1.696892	5.058814	chr16	20674608	20676244	LTR|ERV1|HERV15-int	+	chr16	20623236	20676161	ACSM1|ENST00000519031.5	-	20623236,20624095,20625422,20627255,20636738,20640460,20661793,20669826,20671530,20676124	20623572,20624182,20625522,20627316,20637451,20640584,20661873,20669986,20671671,20676161	0.815789